ProbeName	s14312_CAF_N_427_NS	s14312_CAF_N_427_flags	s14312_NF_N_424_NS	s14312_NF_N_424_flags	foldchange	ControlType	type	PrimaryAccession	RefSeqAccession	GenbankAccession	EntrezGeneID	UniGeneID	GeneSymbol	GeneName	EnsemblID	TIGRID	GO_Avadis_	Description	GenomicCoordinates	Cytoband	result_source	lncRNA_seq_title	Sources	chr	start	end	strand	gene_id	transcript_id	gene_name	transcript_name	cis_gene	trans_gene	cis_region	relation_
LNCA_21_P0011174	1.000775	A	0.93073416	A	1.04974639956091	0	lncRNA	TCONS_l2_00007058	NA	NA	NA	NA	XLOC_l2_003888	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003888), lincRNA [TCONS_l2_00007058]"	chr13:19869379-19869320	hs|13q12.11	Agilent_HUMAN_G3V2	TCONS_l2_00007058	TCONS_l2_00007058	chr13	 19869320	 19869379	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8647_PI429285431	2.879073	A	1.8873404	A	1.98857172627734	0	lncRNA	10199-2_{3001..4479}	lnc-AC016251.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC016251.1-2:1	chr15	 96906842	 96908320	-	lnc-AC016251.1-2	lnc-AC016251.1-2:1	ENSG00000248661	AC087477.1	NA	NA	NA	inter
CUST_1486_PI429285431	3.8777165	P	3.9164596	P	0.973502709876076	0	lncRNA	1473-1_{1..492}	"transcript_id ""ENST00000476987.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000476987.1"" | genecode_v17"	chr3	147810962	147811453	+	ENSG00000241792.1	ENST00000476987.1	RP11-501O2.1	RP11-501O2.1-001	NA	NA	NA	inter
CUST_1231_PI429285431	0.93016106	A	0.9170002	A	1.00916414902679	0	lncRNA	1223-1_{1..404}	"transcript_id ""ENST00000448086.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448086.1"" | genecode_v17"	chr2	216139715	216140118	+	ENSG00000237571.1	ENST00000448086.1	AC073284.4	AC073284.4-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80"	NA	inter
CUST_4510_PI429285431	2.0717933	A	1.5902822	A	1.39620530671379	0	lncRNA	4459-1_{1..1656}	"transcript_id ""ENST00000541258.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000541258.1"" | genecode_v17"	chr12	128602762	128604417	+	ENSG00000256659.1	ENST00000541258.1	RP13-653N12.2	RP13-653N12.2-001	NA	NA	NA	inter
CUST_28243_PI429285431	1.1812226	A	1.3601241	A	0.883375361873029	0	lncRNA	29879-1_{1..2063}	n325535|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255303|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255303|-0.0266541|-0.4046909	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325535|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255303|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255303|-0.0266541|-0.4046909	chr17	 67580068	 67582130	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50"	NA	inter
CUST_18082_PI429285431	14.247134	P	13.784952	P	1.37762382650645	0	lncRNA	19817-1_{1..468}	lnc-MINA-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MINA-3:4	chr3	 96336802	 96337269	-	lnc-MINA-3	lnc-MINA-3:4	XLOC_003181	linc-DHFRL1-4	NA	NA	NA	inter
CUST_38235_PI429285431	8.756071	P	6.978596	P	3.42825636924176	0	lncRNA	39296-2_{3001..3770}	n381720|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001nxj.1||0.2624210|-0.3810727	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381720|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001nxj.1||0.2624210|-0.3810727	chr11	 63394555	 63395324	-	NA	NA	NA	NA	ATL3	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90chr11:63396437-63405325"	NA	inter
CUST_50661_PI429285431	2.2726324	A	1.3842878	A	1.8510509425612	0	lncRNA	54337-1_{1..894}	hg19_lincRNAsTranscripts_TCONS_l2_00002997 range=chr10:42737724-42772282 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002997 range=chr10:42737724-42772282 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 42737724	 42738617	+	NA	NA	NA	NA	NA	"hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0,hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0 3'pad=0 strand=- repeatMasking=none,-104.20"	NA	inter
CUST_3396_PI429285431	1.0922067	A	1.4164602	A	0.798711560265468	0	lncRNA	3369-1_{1..399}	"transcript_id ""ENST00000422554.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422554.2"" | genecode_v17"	chr9	 38360424	 38360822	+	ENSG00000223716.2	ENST00000422554.2	RP11-113O24.3	RP11-113O24.3-001	NA	NA	NA	inter
CUST_39635_PI429285431	3.023469	P	2.6750064	A	1.27320312226555	0	lncRNA	40574-1_{1..225}	n405211|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000044765||-1.0167500|-0.3963713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405211|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000044765||-1.0167500|-0.3963713	chr13	 44816513	 44816737	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48426_PI429285431	1.442809	A	0.91967136	A	1.43707727404228	0	lncRNA	52278-1_{1..846}	hg19_lincRNAsTranscripts_TCONS_l2_00002197 range=chr1:149369294-149378365 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002197 range=chr1:149369294-149378365 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	149369294	149370139	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32589_PI429285431	1.1188031	A	1.60666	A	0.713083585479907	0	lncRNA	34251-1_{1..3000}	n339209|AL161979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1641|NULL|-1.0798900|-0.2505040	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339209|AL161979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1641|NULL|-1.0798900|-0.2505040	chr16	 50700121	 50703120	+	NA	NA	NA	NA	SNX20	"hg19_refFlat_SNX20:range=chr16:50702952-507114375'pad=0,hg19_refFlat_SNX20:range=chr16:50702952-507114375'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30chr16:50700211-50715264"	NA	inner
CUST_12810_PI429285431	5.1783743	P	4.719961	P	1.37402980599144	0	lncRNA	14438-1_{1..575}	lnc-GLB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLB1-1:1	chr3	 33016031	 33016605	-	lnc-GLB1-1	lnc-GLB1-1:1	XLOC_003077	linc-DYNC1LI1-2	NA	NA	NA	inter
CUST_8341_PI429285431	2.3752258	A	2.868769	A	0.710278538903671	0	lncRNA	9922-1_{1..1921}	lnc-NDUFV3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFV3-1:1	chr21	 44338724	 44340644	+	lnc-NDUFV3-1	lnc-NDUFV3-1:1	ENSG00000251415	ENST00000506887	NDUFV3	NA	chr21:44328724-44329773	inter
CUST_40507_PI429285431	2.03495	A	1.1261675	A	1.87746042827643	0	lncRNA	41272-1_{1..2678}	n409482|NR_033867|lncRNA|Homosapiens||RefGeneNoncode|NR_033867||1.9808700|-0.3327067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409482|NR_033867|lncRNA|Homosapiens||RefGeneNoncode|NR_033867||1.9808700|-0.3327067	chr8	 73117533	 73120210	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40866_PI429285431	1.9205879	A	1.9267969	A	0.995705497019976	0	lncRNA	41565-1_{1..1916}	n410662|NR_037909|lncRNA|Homosapiens||RefGeneNoncode|NR_037909||8.0103300|-0.3258669	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410662|NR_037909|lncRNA|Homosapiens||RefGeneNoncode|NR_037909||8.0103300|-0.3258669	chr10	 98912798	 98914713	-	NA	NA	NA	NA	SLIT1	NA	chr10:98902798-98945683	inter
CUST_23859_PI429285431	0.93023884	A	0.9152515	A	1.01044257956838	0	lncRNA	25421-1_{1..435}	lnc-UNKL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UNKL-1:1	chr16	  1411048	  1411482	-	lnc-UNKL-1	lnc-UNKL-1:1	ENSG00000260425.1	LA16c-316G12.2	UNKL	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr16:1413206-1421406"	NA	inner
CUST_15264_PI429285431	0.91284966	A	0.90554345	A	1.0050771239969	0	lncRNA	16937-1_{1..326}	lnc-RAB40A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB40A-1:2	chrX	102792835	102793160	-	lnc-RAB40A-1	lnc-RAB40A-1:2	XLOC_008200	linc-RAB40A-1	NA	NA	NA	inter
CUST_40519_PI429285431	3.5352588	P	3.1549993	P	1.30157595105806	0	lncRNA	41283-1_{1..3000}	n409559|NR_033942|lncRNA|Homosapiens||RefGeneNoncode|NR_033942||11.3447000|-0.0936393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409559|NR_033942|lncRNA|Homosapiens||RefGeneNoncode|NR_033942||11.3447000|-0.0936393	chr7	143956088	143959087	-	NA	NA	NA	NA	OR2A7	NA	chr7:143955789-143956721	inner
CUST_35273_PI429285431	6.466314	P	6.5627832	P	0.935319259475714	0	lncRNA	36673-1_{1..627}	n342282|AX800134|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4774|NULL|-0.8002480|-0.2748924	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342282|AX800134|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4774|NULL|-0.8002480|-0.2748924	chr15	 85958456	 85959082	-	NA	NA	NA	NA	AKAP13	"hg19_refFlat_FABP5:range=chr8:82192831-821968025'pad=0,hg19_refFlat_FABP5:range=chr8:82192831-821968025'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20chr15:85948456-85969083"	NA	inner
CUST_34442_PI429285431	0.91921026	A	0.9077365	A	1.00798471353912	0	lncRNA	35920-1_{1..2127}	n341317|AK097910|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3786|NULL|-0.7676710|-0.2373691	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341317|AK097910|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3786|NULL|-0.7676710|-0.2373691	chr7	130007189	130009315	-	NA	NA	NA	NA	CPA5	"hg19_refFlat_CPA1:range=chr7:130020362-1300278525'pad=0,hg19_refFlat_CPA1:range=chr7:130020362-1300278525'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CPA5:range=chr7:129986327-1300084245'pad=0,hg19_refFlat_CPA5:range=chr7:129986327-1300084245'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10;hg19_refFlat_CPA5:range=chr7:129986327-1300084385'pad=0,hg19_refFlat_CPA5:range=chr7:129986327-1300084385'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10chr7:129997189-130008571"	NA	inner
CUST_52083_PI429285431	3.0146847	A	1.6145492	A	2.63926369335982	0	lncRNA	55612-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017550 range=chr22:17082289-17134690 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017550 range=chr22:17082289-17134690 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17082289	 17085288	+	NA	NA	NA	NA	CCT8L2	"hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.10;hg19_refFlat_SLC25A15:range=chr13:41367363-413838035'pad=0,hg19_refFlat_SLC25A15:range=chr13:41367363-413838035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60chr22:17072289-17073700"	NA	inter
CUST_6608_PI429285431	1.1481776	A	0.915318	A	1.17516195860291	0	lncRNA	6556-1_{1..1290}	"transcript_id ""ENST00000599641.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000599641.1"" | genecode_v17"	chr19	 57352270	 57353559	+	ENSG00000268654.1	ENST00000599641.1	MIMT1	MIMT1-001	ZIM2	NA	chr19:57342270-57352097	inter
CUST_31980_PI429285431	1.376527	A	1.0419656	A	1.26099399027924	0	lncRNA	33702-1_{1..1338}	n338539|BC039513|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|942|NULL|-1.1023500|-0.2332092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338539|BC039513|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|942|NULL|-1.1023500|-0.2332092	chr1	224407314	224408651	+	NA	NA	NA	NA	NVL	"hg19_refFlat_NVL:range=chr1:224415328-2245178295'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2245178295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NVL:range=chr1:224415328-2244995255'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244995255'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr1:224415036-224425745"	NA	inner
CUST_15568_PI429285431	1.688298	A	2.7889063	A	0.466319834549212	0	lncRNA	17253-1_{1..626}	lnc-CBLB-7:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLB-7:8	chr3	106848735	106849360	-	lnc-CBLB-7	lnc-CBLB-7:8	XLOC_003204	linc-CBLB-6	NA	NA	NA	inter
CUST_22696_PI429285431	1.0825897	A	0.91102713	A	1.12627768553025	0	lncRNA	24279-1_{1..229}	lnc-SMYD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SMYD2-1:1	chr1	214168313	214168541	+	lnc-SMYD2-1	lnc-SMYD2-1:1	ENSG00000223365.1	PROX1-IT1	PROX1	NA	chr1:214161860-214178426	inner
LNCA_21_P0010716	1.4152174	A	2.6753633	A	0.417501735556139	0	lncRNA	ENST00000450675	NA	NA	NA	NA	XLOC_l2_000384	NA	ENST00000450675	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000384), lincRNA [TCONS_l2_00002145]"	chr1:120145043-120145102	hs|1p12	Agilent_HUMAN_G3V2	ENST00000450675	ENST00000450675	chr1	120145043	120145102	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21047_PI429285431	1.5840976	A	2.0842774	A	0.70701866147065	0	lncRNA	22674-1_{1..577}	lnc-ZFC3H1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZFC3H1-3:1	chr12	 72104012	 72104588	-	lnc-ZFC3H1-3	lnc-ZFC3H1-3:1	ENSG00000257515.1	RP11-498M15.1	TMEM19	NA	chr12:72094012-72097840	inter
CUST_41422_PI429285431	3.4990168	P	1.1179888	A	5.20907785570867	0	lncRNA	42572-1_{1..91}	ENST00000583614 ncrna:miRNA chromosome:GRCh37:2:65894390:65894480:1 gene:ENSG00000265899 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583614 ncrna:miRNA chromosome:GRCh37:2:65894390:65894480:1 gene:ENSG00000265899 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 65894390	 65894480	+	ENSG00000265899	ENST00000583614	NA	NA	NA	NA	NA	inter
CUST_51378_PI429285431	4.3279724	P	4.6245933	P	0.814157094730837	0	lncRNA	54972-1_{1..312}	hg19_lincRNAsTranscripts_TCONS_l2_00008877 range=chr15:100347248-100353277 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008877 range=chr15:100347248-100353277 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	100347248	100347559	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1981_PI429285431	0.9197271	A	0.9258085	A	0.995793566665036	0	lncRNA	1972-1_{1..1824}	"transcript_id ""ENST00000511291.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511291.1"" | genecode_v17"	chr4	174845358	174847181	-	ENSG00000251216.1	ENST00000511291.1	RP11-161D15.3	RP11-161D15.3-001	NA	NA	NA	inter
CUST_40529_PI429285431	7.4818726	P	7.394312	P	1.06257199871614	0	lncRNA	41291-1_{1..1759}	n409637|NR_034021|lncRNA|Homosapiens||RefGeneNoncode|NR_034021||2.6967100|-0.1943404	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409637|NR_034021|lncRNA|Homosapiens||RefGeneNoncode|NR_034021||2.6967100|-0.1943404	chr5	 69776869	 69778627	-	NA	NA	NA	NA	LOC100652848	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr5:69825252-69826273"	NA	inter
CUST_7326_PI429285431	9.298046	P	9.339357	P	0.971771481814549	0	lncRNA	8651-1_{1..291}	"transcript_id ""ENST00000577587.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577587.1"" | genecode_v17"	chr17	 55489272	 55489562	-	ENSG00000263902.1	ENST00000577587.1	RN7SL437P	RN7SL437P-201	MSI2	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90chr17:55479272-55499562"	NA	inner
CUST_718_PI429285431	0.92681456	A	1.4286602	A	0.706202757748552	0	lncRNA	711-1_{1..456}	"transcript_id ""ENST00000587050.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587050.1"" | genecode_v17"	chr2	  6789236	  6789691	-	ENSG00000236172.2	ENST00000587050.1	AC097517.2	AC097517.2-025	NA	NA	NA	inter
CUST_50082_PI429285431	0.92543066	A	0.91883904	A	1.00457941644362	0	lncRNA	53816-1_{1..574}	hg19_lincRNAsTranscripts_TCONS_l2_00027895 range=chr8:95565966-95582741 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027895 range=chr8:95565966-95582741 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 95565966	 95566539	+	NA	NA	NA	NA	KIAA1429	NA	chr8:95555966-95565746	inter
CUST_3475_PI429285431	2.475231	A	2.5037415	A	0.980432015128662	0	lncRNA	3446-1_{1..295}	"transcript_id ""ENST00000427745.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427745.1"" | genecode_v17"	chr9	 93719542	 93719836	-	ENSG00000228216.1	ENST00000427745.1	RP11-367F23.1	RP11-367F23.1-001	NA	NA	NA	inter
CUST_230_PI429285431	0.9181994	A	0.9220395	A	0.997341784839439	0	lncRNA	220-1_{1..270}	"transcript_id ""ENST00000431986.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431986.1"" | genecode_v17"	chr1	 48671637	 48671906	+	ENSG00000223720.1	ENST00000431986.1	RP5-1024N4.2	RP5-1024N4.2-001	NA	NA	NA	inter
CUST_26268_PI429285431	0.9322534	A	0.91836566	A	1.00967272917623	0	lncRNA	27774-1_{1..591}	lnc-REM2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-REM2-2:2	chr14	 23424339	 23424929	+	lnc-REM2-2	lnc-REM2-2:2	ENSG00000257285.1	RP11-298I3.1	HAUS4	NA	chr14:23415437-23426351	inner
CUST_215_PI429285431	0.89977556	A	1.773084	A	0.545893551457437	0	lncRNA	205-1_{1..709}	"transcript_id ""ENST00000445073.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445073.1"" | genecode_v17"	chr1	 41708247	 41708955	+	ENSG00000235358.1	ENST00000445073.1	RP11-399E6.1	RP11-399E6.1-002	SCMH1	NA	chr1:41698247-41707815	inter
CUST_35257_PI429285431	2.379089	A	2.4143312	A	0.975867918076379	0	lncRNA	36658-1_{1..1272}	n342263|AF130850|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4753|NULL|4.7271700|-0.0927624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342263|AF130850|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4753|NULL|4.7271700|-0.0927624	chr22	 19014308	 19015579	+	NA	NA	NA	NA	DGCR2	NA	chr22:19023795-19025512	inter
CUST_13506_PI429285431	1.2737738	A	0.91090333	A	1.28598201846808	0	lncRNA	15146-1_{1..1185}	lnc-NR2F1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR2F1-1:1	chr5	 92907588	 92908772	+	lnc-NR2F1-1	lnc-NR2F1-1:1	XLOC_004475	linc-NR2F1-1	NA	NA	NA	inter
CUST_47199_PI429285431	6.9946995	P	7.209947	P	0.861398370762114	0	lncRNA	51274-1_{1..755}	"gi|52317159|ref|NR_002166.1| Homo sapiens trafficking protein particle complex 2 pseudogene 1 (TRAPPC2P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|52317159|ref|NR_002166.1| Homo sapiens trafficking protein particle complex 2 pseudogene 1 (TRAPPC2P1), non-coding RNA"	Chr19	 57874879	 57875633	+	10597	NR_002166.1	NA	NA	NA	NA	NA	inter
CUST_12104_PI429285431	3.555383	P	2.8996773	A	1.5753863711869	0	lncRNA	13701-1_{1..214}	lnc-MTX2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTX2-1:2	chr2	177520426	177520639	+	lnc-MTX2-1	lnc-MTX2-1:2	XLOC_001765	linc-HNRNPA3-4	NA	NA	NA	inter
CUST_25413_PI429285431	4.38429	P	4.854607	P	0.721805979599332	0	lncRNA	26943-1_{1..337}	lnc-GGPS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GGPS1-1:1	chr1	235590250	235590586	+	lnc-GGPS1-1	lnc-GGPS1-1:1	ENSG00000243533.1	RP11-293G6__A.2	TBCE	NA	chr1:235580250-235600298	inner
CUST_47653_PI429285431	0.92995095	A	1.1228391	A	0.874852588296182	0	lncRNA	51637-1_{1..701}	"gi|336285279|ref|NR_038461.1| Homo sapiens uncharacterized LOC100128420 (LOC100128420), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336285279|ref|NR_038461.1| Homo sapiens uncharacterized LOC100128420 (LOC100128420), transcript variant 1, non-coding RNA"	ChrX	135721702	135722402	+	100128420	NR_038461.1	NA	NA	NA	NA	NA	inter
CUST_30485_PI429285431	10.183065	P	9.390653	P	1.73196766992656	0	lncRNA	32265-1_{1..796}	n335636|CR605399|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000284594|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000284594|-1.2147600|-0.4693872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335636|CR605399|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000284594|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000284594|-1.2147600|-0.4693872	chr7	 26252175	 26252970	+	NA	NA	NA	NA	CBX3	NA	chr7:26242175-26253227	inner
CUST_35889_PI429285431	0.9168575	A	0.9172622	A	0.999719522677148	0	lncRNA	37274-3_{6001..6976}	n344549|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_97|NULL|-1.3386900|-0.3545874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344549|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_97|NULL|-1.3386900|-0.3545874	chr5	 88242140	 88243115	+	NA	NA	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-62.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
CUST_11399_PI429285431	0.98506504	A	0.95773965	A	1.01912102647531	0	lncRNA	12965-1_{1..458}	lnc-RP11-201M22.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-201M22.1.1-2:1	chr11	 91589502	 91589959	+	lnc-RP11-201M22.1.1-2	lnc-RP11-201M22.1.1-2:1	XLOC_009249	linc-FAT3-2	NA	NA	NA	inter
CUST_5499_PI429285431	1.0661187	A	0.92411405	A	1.10343729656293	0	lncRNA	5431-1_{1..650}	"transcript_id ""ENST00000568904.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568904.1"" | genecode_v17"	chr16	 33006858	 33007507	+	ENSG00000260921.1	ENST00000568904.1	RP11-989E6.8	RP11-989E6.8-001	LOC100132941	NA	chr16:33006369-33017127	inter
CUST_25126_PI429285431	2.8665109	A	2.738861	A	1.09251258599604	0	lncRNA	26664-1_{1..476}	lnc-FBRSL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBRSL1-3:1	chr12	132908045	132908520	+	lnc-FBRSL1-3	lnc-FBRSL1-3:1	ENSG00000255916.1	RP13-895J2.7	GALNT9	NA	chr12:132898045-132905905	inter
CUST_2360_PI429285431	1.2974629	A	1.0256257	M	1.20734434179839	0	lncRNA	2353-1_{1..914}	"transcript_id ""ENST00000509185.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509185.2"" | genecode_v17"	chr5	126087655	126088568	-	ENSG00000251072.2	ENST00000509185.2	RP11-434D11.4	RP11-434D11.4-001	LMNB1	NA	chr5:126112315-126122178	inter
CUST_389_PI429285431	3.3642123	P	4.289914	P	0.526424412669531	0	lncRNA	381-1_{1..426}	"transcript_id ""ENST00000450546.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450546.1"" | genecode_v17"	chr1	121315744	121316169	-	ENSG00000224857.1	ENST00000450546.1	AL592494.1	AL592494.1-001	NA	NA	NA	inter
CUST_18507_PI429285431	1.1055226	A	0.9101639	A	1.14500881091957	0	lncRNA	20222-1_{1..3000}	lnc-C8orf22-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-C8orf22-5:2	chr8	 49700197	 49703196	+	lnc-C8orf22-5	lnc-C8orf22-5:2	ENSG00000233858	AC026904.1	NA	NA	NA	inter
CUST_24816_PI429285431	5.544647	P	6.351242	P	0.571729643761375	0	lncRNA	26356-1_{1..562}	lnc-SCIN-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SCIN-2:3	chr7	 12580546	 12581107	+	lnc-SCIN-2	lnc-SCIN-2:3	ENSG00000226690.2	AC005281.1	NA	NA	NA	inter
CUST_7505_PI429285431	4.062715	P	3.9721627	P	1.06477772817278	0	lncRNA	9146-1_{1..1628}	lnc-ZNF192-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ZNF192-2:1	chr6	 28137180	 28138807	+	lnc-ZNF192-2	lnc-ZNF192-2:1	ENSG00000226314	AL022393.5	ZNF389	NA	chr6:28129551-28137376	inter
CUST_3224_PI429285431	4.8557787	P	5.168638	P	0.805044646422607	0	lncRNA	3203-1_{1..577}	"transcript_id ""ENST00000518416.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518416.1"" | genecode_v17"	chr8	 92577208	 92577784	-	ENSG00000253901.1	ENST00000518416.1	RP11-122C21.1	RP11-122C21.1-002	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90"	NA	inter
CUST_39248_PI429285431	7.1278267	P	7.663626	P	0.689776412235933	0	lncRNA	40219-1_{1..1212}	n386108|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bao.1||0.5411530|-0.2342201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386108|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bao.1||0.5411530|-0.2342201	chr15	 32888448	 32889659	+	NA	NA	NA	NA	LOC643699	NA	chr15:32885755-32896179	inter
CUST_35706_PI429285431	3.5585778	P	4.2244906	P	0.630289790889379	0	lncRNA	37126-1_{1..2311}	n342873|BC043374|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5378|NULL|1.9610200|-0.1409049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342873|BC043374|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5378|NULL|1.9610200|-0.1409049	chr9	 99837952	 99840262	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45782_PI429285431	2.0870492	A	2.5731816	A	0.713936466968262	0	lncRNA	50125-1_{1..2128}	"gi|410170612|ref|XR_171058.1| PREDICTED: Homo sapiens uncharacterized LOC101060148 (LOC101060148), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170612|ref|XR_171058.1| PREDICTED: Homo sapiens uncharacterized LOC101060148 (LOC101060148), misc_RNA"	NA	NA	NA	NA	NA	XR_171058.1	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90"	NA	Unknown
CUST_15392_PI429285431	1.1797155	A	0.90135044	A	1.21281967250254	0	lncRNA	17077-1_{1..2613}	lnc-P2RY1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-P2RY1-3:5	chr3	152455433	152458045	+	lnc-P2RY1-3	lnc-P2RY1-3:5	XLOC_002878	linc-P2RY1-2	NA	NA	NA	inter
CUST_34472_PI429285431	7.487915	P	6.9122486	P	1.49036572387366	0	lncRNA	35940-2_{3001..4010}	n341347|D83492|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3816|NULL|17.5249000|-0.0658758	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341347|D83492|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3816|NULL|17.5249000|-0.0658758	chr7	142555822	142556831	+	NA	NA	NA	NA	EPHB6	NA	chr7:142552792-142568847	inner
CUST_13005_PI429285431	1.025767	A	0.9174671	A	1.07795720193526	0	lncRNA	14632-1_{1..1899}	lnc-C10orf35-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf35-2:1	chr10	 71450357	 71452255	+	lnc-C10orf35-2	lnc-C10orf35-2:1	XLOC_008506	linc-COL13A1	NA	NA	NA	inter
CUST_41390_PI429285431	10.883506	P	10.831541	P	1.03667595079921	0	lncRNA	42498-1_{1..78}	ENST00000579927 ncrna:miRNA chromosome:GRCh37:2:12877493:12877570:1 gene:ENSG00000264370 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579927 ncrna:miRNA chromosome:GRCh37:2:12877493:12877570:1 gene:ENSG00000264370 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 12877493	 12877570	+	ENSG00000264370	ENST00000579927	NA	NA	TRIB2	NA	chr2:12867493-12882860	inter
CUST_28517_PI429285431	0.9070047	A	1.2432172	A	0.792118128261819	0	lncRNA	30186-1_{1..574}	n325862|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050848|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050848|-0.8499990|-0.2391683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325862|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050848|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050848|-0.8499990|-0.2391683	chr10	125198858	125199431	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0000986	6.5853524	P	6.690566	P	0.929667289381962	0	lncRNA	ENST00000411903	NA	NA	NA	NA	XLOC_000256	NA	ENST00000411903	NA	NA	"BROAD Institute lincRNA (XLOC_000256), lincRNA [TCONS_00000230]"	chr1:73773102-73773161	hs|1p31.1	Agilent_HUMAN_G3V2	ENST00000411903	ENST00000411903	chr1	 73773102	 73773161	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49625_PI429285431	1.4626484	A	2.2285655	A	0.588079416335979	0	lncRNA	53409-1_{1..469}	hg19_lincRNAsTranscripts_TCONS_l2_00025688 range=chr7:16955704-17052232 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025688 range=chr7:16955704-17052232 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 16955704	 16956172	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41285_PI429285431	10.300545	P	10.428674	P	0.915017347291354	0	lncRNA	42273-1_{1..84}	ENST00000581900 ncrna:miRNA chromosome:GRCh37:1:92694813:92694896:-1 gene:ENSG00000265543 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581900 ncrna:miRNA chromosome:GRCh37:1:92694813:92694896:-1 gene:ENSG00000265543 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 92694813	 92694896	-	ENSG00000265543	ENST00000581900	NA	NA	C1orf146	NA	chr1:92684813-92704896	inner
CUST_16791_PI429285431	1.2510383	A	0.91167986	A	1.26519384283804	0	lncRNA	18500-1_{1..1205}	lnc-FAR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAR2-1:1	chr12	 29209092	 29210296	+	lnc-FAR2-1	lnc-FAR2-1:1	XLOC_009696	linc-FAR2-1	NA	NA	NA	inter
CUST_24791_PI429285431	2.6905198	P	2.4950202	A	1.14512064302222	0	lncRNA	26334-1_{1..483}	lnc-GDF5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GDF5-1:3	chr20	 34078682	 34079164	-	lnc-GDF5-1	lnc-GDF5-1:3	ENSG00000230155.1	RP3-477O4.14	CEP250	"hg19_refFlat_CEP250:range=chr20:34050193-340994555'pad=0,hg19_refFlat_CEP250:range=chr20:34050193-340994555'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90chr20:34068682-34088743"	NA	inner
CUST_51458_PI429285431	2.1076088	A	2.0791647	A	1.01991159066253	0	lncRNA	55035-1_{1..583}	hg19_lincRNAsTranscripts_TCONS_l2_00010118 range=chr16:33120909-33123235 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010118 range=chr16:33120909-33123235 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 33120909	 33121491	-	NA	NA	NA	NA	LOC653550	NA	chr16:33110909-33133235	inter
CUST_34456_PI429285431	5.569912	P	4.6871533	P	1.84389780629648	0	lncRNA	35931-2_{3001..6000}	n341331|D86978|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3800|NULL|19.5145000|-0.3275288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341331|D86978|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3800|NULL|19.5145000|-0.3275288	chr7	135245687	135248686	+	NA	NA	NA	NA	NUP205	NA	chr7:135242662-135333501	inner
CUST_16449_PI429285431	0.92045367	A	0.9165766	A	1.00269099438223	0	lncRNA	18148-1_{1..404}	lnc-TWIST1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TWIST1-1:2	chr7	 19095674	 19096077	-	lnc-TWIST1-1	lnc-TWIST1-1:2	XLOC_006364	linc-PRPS1L1	NA	NA	NA	inter
CUST_8485_PI429285431	12.007391	P	11.988009	P	1.01352522809622	0	lncRNA	10049-1_{1..915}	lnc-KIAA1919-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1919-3:9	chr6	111824499	111825413	+	lnc-KIAA1919-3	lnc-KIAA1919-3:9	ENSG00000231889	TRAF3IP2-AS1	NA	NA	NA	inter
CUST_25173_PI429285431	0.91792274	A	0.9088447	A	1.00631225668171	0	lncRNA	26704-1_{1..882}	lnc-PPFIA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPFIA2-1:1	chr12	 81519363	 81520244	-	lnc-PPFIA2-1	lnc-PPFIA2-1:1	ENSG00000258026.1	RP11-543H12.1	ACSS3	NA	chr12:81509363-81529624	inner
CUST_26609_PI429285431	1.387696	A	1.5929066	A	0.867412055876754	0	lncRNA	28112-1_{1..545}	lnc-SERPINI1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SERPINI1-6:1	chr3	168008928	168009472	+	lnc-SERPINI1-6	lnc-SERPINI1-6:1	ENSG00000241882.1	RP11-637O11.2	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-31.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90"	NA	inter
CUST_2213_PI429285431	2.3962798	A	2.3012106	A	1.06811663987214	0	lncRNA	2205-1_{1..449}	"transcript_id ""ENST00000512952.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512952.1"" | genecode_v17"	chr5	 81841681	 81842129	-	ENSG00000248393.1	ENST00000512952.1	CTD-2015A6.1	CTD-2015A6.1-001	NA	NA	NA	inter
CUST_35403_PI429285431	0.99978936	A	1.243149	A	0.844775769542192	0	lncRNA	36814-1_{1..1035}	n342463|BC038542|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4957|NULL|0.1379380|-0.1918366	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342463|BC038542|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4957|NULL|0.1379380|-0.1918366	chr2	219765535	219766569	-	NA	NA	NA	NA	WNT10A	NA	chr2:219755535-219758651	inter
CUST_27729_PI429285431	0.9139469	A	1.1740465	A	0.835030269070257	0	lncRNA	29311-1_{1..374}	n324944|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079753|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079753|-1.0090000|-0.2469459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324944|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079753|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079753|-1.0090000|-0.2469459	chr20	 50735067	 50735440	+	NA	NA	NA	NA	ZFP64	NA	chr20:50725067-50750875	inner
LNCA_21_P0002026	0.9493614	A	0.9683463	A	0.98692687552406	0	lncRNA	ENST00000443897	NA	BC043433	NA	Hs.565600	XLOC_002006	NA	ENST00000443897	THC2530643	NA	"BROAD Institute lincRNA (XLOC_002006), lincRNA [TCONS_00003221]"	chr2:19658040-19657981	hs|2p24.1	Agilent_HUMAN_G3V2	ENST00000443897	ENST00000443897	chr2	 19657981	 19658040	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34053_PI429285431	8.493895	P	8.002625	P	1.40568174856325	0	lncRNA	35583-1_{1..1464}	n340871|BC044607|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3336|NULL|-0.8542170|-0.1647215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340871|BC044607|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3336|NULL|-0.8542170|-0.1647215	chr17	 74565873	 74567336	+	NA	NA	NA	NA	ST6GALNAC2	"hg19_refFlat_ST6GALNAC2:range=chr17:74562186-745818905'pad=0,hg19_refFlat_ST6GALNAC2:range=chr17:74562186-745818905'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60chr17:74561461-74577322"	NA	inner
LNCA_21_P0006338	6.1069546	P	6.42813	P	0.800417491570319	0	lncRNA	TCONS_00016520	NA	NA	NA	NA	XLOC_007904	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007904), lincRNA [TCONS_00016520]"	chr9:140769955-140768666	hs|9q34.3	Agilent_HUMAN_G3V2	TCONS_00016520	TCONS_00016520	chr9	140768666	140769955	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24549_PI429285431	0.98433274	A	0.9460027	A	1.02692444455142	0	lncRNA	26099-1_{1..745}	lnc-TRPM1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRPM1-1:3	chr15	 31522910	 31523654	-	lnc-TRPM1-1	lnc-TRPM1-1:3	ENSG00000259772.1	RP11-16E12.2	LOC283710	NA	chr15:31514970-31523050	inner
CUST_26646_PI429285431	0.98250926	A	0.94798934	A	1.02421594197614	0	lncRNA	28147-1_{1..3000}	lnc-DCUN1D5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-DCUN1D5-1:1	chr11	102921416	102924415	-	lnc-DCUN1D5-1	lnc-DCUN1D5-1:1	ENSG00000260966.1	RP11-690D19.3	DCUN1D5	NA	chr11:102921413-102936528	inner
CUST_51222_PI429285431	1.8408749	A	1.2556747	A	1.50024716123808	0	lncRNA	54840-1_{1..292}	hg19_lincRNAsTranscripts_TCONS_l2_00008912 range=chr15:22145577-22145988 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008912 range=chr15:22145577-22145988 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 22145577	 22145868	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29158_PI429285431	4.2532153	P	4.7946386	P	0.687092718881548	0	lncRNA	30901-1_{1..483}	n326669|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000012834|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000012834|0.2313690|-0.3586840	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326669|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000012834|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000012834|0.2313690|-0.3586840	chr1	 25780555	 25781037	+	NA	NA	NA	NA	TMEM57	NA	chr1:25770555-25799434	inner
CUST_9136_PI429285431	0.92838407	A	0.9267701	A	1.00111934475425	0	lncRNA	10655-1_{1..2535}	lnc-C1QL4-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1QL4-3:2	chr12	 49675882	 49678416	-	lnc-C1QL4-3	lnc-C1QL4-3:2	ENSG00000250773	XLOC_010068	TUBA1C	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-11.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.31;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-29.32;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.60;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40chr12:49665882-49667113"	NA	inter
CUST_24472_PI429285431	6.7046685	P	6.7543373	P	0.966158104717884	0	lncRNA	26025-1_{1..3000}	lnc-HMBS-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMBS-1:4	chr11	118952169	118955168	+	lnc-HMBS-1	lnc-HMBS-1:4	ENSG00000160695.8	VPS11	HMBS	NA	chr11:118955587-118962674	inner
CUST_36988_PI429285431	2.0689144	A	2.49929	A	0.742068565520728	0	lncRNA	38133-1_{1..1008}	n345449|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_998|NULL|-1.3040000|-0.3485477	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345449|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_998|NULL|-1.3040000|-0.3485477	chr1	 90200754	 90201761	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42185_PI429285431	0.9166498	A	0.9133218	A	1.0023094565128	0	lncRNA	44246-1_{1..78}	ENST00000577473 ncrna:miRNA chromosome:GRCh37:6:92231378:92231455:1 gene:ENSG00000263734 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577473 ncrna:miRNA chromosome:GRCh37:6:92231378:92231455:1 gene:ENSG00000263734 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 92231378	 92231455	+	ENSG00000263734	ENST00000577473	NA	NA	NA	NA	NA	inter
CUST_2253_PI429285431	1.8606513	A	1.2162218	A	1.56312104271164	0	lncRNA	2245-1_{1..549}	"transcript_id ""ENST00000514239.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514239.1"" | genecode_v17"	chr5	 90519236	 90519784	+	ENSG00000212930.3	ENST00000514239.1	RP11-414H23.2	RP11-414H23.2-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30"	NA	inter
CUST_51132_PI429285431	0.9245747	A	1.1323651	A	0.865862352024149	0	lncRNA	54762-2_{3001..4398}	hg19_lincRNAsTranscripts_TCONS_l2_00008356 range=chr14:39218545-39417475 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008356 range=chr14:39218545-39417475 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr14	 39221545	 39222942	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZFP41:range=chr8:144332014-1443326105'pad=0,hg19_refFlat_ZFP41:range=chr8:144332014-1443326105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80"	NA	inter
CUST_18081_PI429285431	0.95494336	A	1.4611051	A	0.704093173409529	0	lncRNA	19816-1_{1..323}	lnc-RORB-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RORB-2:2	chr9	 76552803	 76553125	+	lnc-RORB-2	lnc-RORB-2:2	XLOC_007407	linc-RORB-2	NA	NA	NA	inter
CUST_29566_PI429285431	2.4121368	A	2.6151907	A	0.868709728998939	0	lncRNA	31326-1_{1..576}	n333063|AF258678|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075244|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075244|1.7995400|-0.2066035	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333063|AF258678|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075244|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075244|1.7995400|-0.2066035	chr11	   624213	   624788	-	NA	NA	NA	NA	CDHR5	NA	chr11:616565-625067	inner
CUST_33136_PI429285431	4.199739	P	5.0838337	P	0.541827416141055	0	lncRNA	34732-1_{1..1640}	n339825|BC035844|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2272|NULL|-1.1049700|-0.1756804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339825|BC035844|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2272|NULL|-1.1049700|-0.1756804	chr18	 29522537	 29524176	+	NA	NA	NA	NA	TRAPPC8	"hg19_refFlat_TRAPPC8:range=chr18:29410718-295227275'pad=0,hg19_refFlat_TRAPPC8:range=chr18:29410718-295227275'pad=0 3'pad=0 strand=- repeatMasking=none,-95.40chr18:29512537-29523091"	NA	inner
CUST_28688_PI429285431	3.7111313	P	3.3401859	P	1.29319998872658	0	lncRNA	30386-1_{1..916}	n326074|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046727|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046727|-0.6159290|-0.2685009	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326074|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046727|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046727|-0.6159290|-0.2685009	chr10	  8341299	  8342214	-	NA	NA	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40"	NA	inter
CUST_40145_PI429285431	2.2826402	A	1.8432018	A	1.35607634287642	0	lncRNA	40982-2_{3001..3571}	n407766|NR_027287|lncRNA|Homosapiens||RefGeneNoncode|NR_027287||0.1748390|-0.0990199	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407766|NR_027287|lncRNA|Homosapiens||RefGeneNoncode|NR_027287||0.1748390|-0.0990199	chr20	 62587736	 62588306	+	NA	NA	NA	NA	UCKL1	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_UCKL1:range=chr20:62571329-625877255'pad=0,hg19_refFlat_UCKL1:range=chr20:62571329-625877255'pad=0 3'pad=0 strand=- repeatMasking=none,-103.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10chr20:62574736-62587800"	NA	inter
CUST_5635_PI429285431	2.9579008	A	3.6307342	P	0.627273534572365	0	lncRNA	5563-1_{1..506}	"transcript_id ""ENST00000568389.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568389.1"" | genecode_v17"	chr16	 79787283	 79787788	-	ENSG00000261390.1	ENST00000568389.1	RP11-345M22.2	RP11-345M22.2-004	NA	NA	NA	inter
CUST_20291_PI429285431	0.91418654	A	1.0813178	A	0.890611866827197	0	lncRNA	21935-1_{1..544}	lnc-ARHGAP28-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARHGAP28-5:1	chr18	  6082357	  6082900	+	lnc-ARHGAP28-5	lnc-ARHGAP28-5:1	ENSG00000266846.1	RP11-793A3.2	L3MBTL4	NA	chr18:6072357-6092454	inner
CUST_37148_PI429285431	1.5226728	A	0.99691457	A	1.43969003188358	0	lncRNA	38267-1_{1..1189}	n345586|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1135|NULL|-1.4551200|-0.3670801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345586|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1135|NULL|-1.4551200|-0.3670801	chr3	 37427706	 37428894	+	NA	NA	NA	NA	C3orf35	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.90chr3:37440968-37442830"	NA	inter
CUST_36065_PI429285431	7.9837775	P	7.871574	P	1.08087785500052	0	lncRNA	37375-1_{1..1284}	n344657|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_206|NULL|-1.3266800|-0.3477592	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344657|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_206|NULL|-1.3266800|-0.3477592	chr15	 29969379	 29970662	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51348_PI429285431	2.5153515	A	1.281575	A	2.35181813246892	0	lncRNA	54946-2_{3001..3126}	hg19_lincRNAsTranscripts_TCONS_l2_00008761 range=chr15:78996146-79029199 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008761 range=chr15:78996146-79029199 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 78999146	 78999271	+	NA	NA	NA	NA	NA	"hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20"	NA	inter
CUST_12388_PI429285431	1.7735347	A	1.6137204	A	1.11714333299695	0	lncRNA	14001-1_{1..1859}	lnc-SCCPDH-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCCPDH-1:8	chr1	246955359	246957217	+	lnc-SCCPDH-1	lnc-SCCPDH-1:8	XLOC_000643	linc-VN1R5-3	LOC100130097	NA	chr1:246945359-246948062	inter
CUST_6333_PI429285431	0.9368208	A	0.91419613	A	1.01580583765338	0	lncRNA	6256-2_{3001..3381}	"transcript_id ""ENST00000344893.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000344893.3"" | genecode_v17"	chr19	 11753591	 11753971	+	ENSG00000197332.7	ENST00000344893.3	ZNF833P	ZNF833P-001	NA	NA	NA	inter
CUST_2191_PI429285431	2.586473	A	3.0618422	P	0.719282694859915	0	lncRNA	2183-1_{1..591}	"transcript_id ""ENST00000506250.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506250.1"" | genecode_v17"	chr5	 71870013	 71870603	-	ENSG00000248371.1	ENST00000506250.1	CTC-347C20.2	CTC-347C20.2-002	LOC389300	NA	chr5:71869991-71886804	inter
LNCA_21_P0006005	2.791665	A	3.0111403	A	0.858877748604815	0	lncRNA	ENST00000431981	NA	NA	NA	NA	XLOC_007339	NA	ENST00000431981	THC2684702	NA	"BROAD Institute lincRNA (XLOC_007339), lincRNA [TCONS_00015664]"	chr9:35790154-35790213	hs|9p13.3	Agilent_HUMAN_G3V2	ENST00000431981	ENST00000431981	chr9	 35790154	 35790213	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24487_PI429285431	4.518018	P	4.3404946	P	1.13094079037413	0	lncRNA	26039-1_{1..347}	lnc-MRP63-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MRP63-5:1	chr13	 21878606	 21878952	+	lnc-MRP63-5	lnc-MRP63-5:1	ENSG00000244054.1	LINC00539	NA	NA	NA	inter
CUST_35621_PI429285431	4.238382	P	4.474883	P	0.848801434755656	0	lncRNA	37036-1_{1..338}	n342762|X64990|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5265|NULL|1.2101900|-0.3632053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342762|X64990|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5265|NULL|1.2101900|-0.3632053	chr11	 55595068	 55595405	+	NA	NA	NA	NA	OR5L2	NA	chr11:55594695-55595630	inner
CUST_41377_PI429285431	0.91809964	A	1.3987777	A	0.716640727015254	0	lncRNA	42469-1_{1..86}	ENST00000577904 ncrna:miRNA chromosome:GRCh37:8:130496303:130496388:-1 gene:ENSG00000263763 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577904 ncrna:miRNA chromosome:GRCh37:8:130496303:130496388:-1 gene:ENSG00000263763 gene_biotype:miRNA transcript_biotype:miRNA	chr8	130496303	130496388	-	ENSG00000263763	ENST00000577904	NA	NA	NA	NA	NA	inter
LNCA_21_P0007180	2.5459998	A	2.6909492	A	0.904411097638943	0	lncRNA	ENST00000532242	NA	NA	NA	NA	XLOC_009074	NA	ENST00000532242	NA	NA	"BROAD Institute lincRNA (XLOC_009074), lincRNA [TCONS_00019243]"	chr11:15725980-15726755	hs|11p15.2	Agilent_HUMAN_G3V2	ENST00000532242	ENST00000532242	chr11	 15725980	 15726755	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33054_PI429285431	1.4171441	A	1.4516375	A	0.976374552911887	0	lncRNA	34665-1_{1..2211}	n339743|BC005856|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2189|NULL|-0.8382670|-0.3518084	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n339743|BC005856|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2189|NULL|-0.8382670|-0.3518084	chr3	192959567	192961777	+	NA	NA	NA	NA	HRASLS	NA	chr3:192958918-192971761	inner
CUST_12688_PI429285431	0.9100841	A	0.90309495	A	1.00485626322622	0	lncRNA	14306-1_{1..494}	lnc-POM121L12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POM121L12-1:1	chr7	 52842357	 52842850	+	lnc-POM121L12-1	lnc-POM121L12-1:1	XLOC_006101	linc-POM121L12-1	NA	NA	NA	inter
CUST_49907_PI429285431	0.98054326	A	0.9275634	A	1.03740545430076	0	lncRNA	53656-1_{1..413}	hg19_lincRNAsTranscripts_TCONS_l2_00026747 range=chr7:91258911-91262062 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026747 range=chr7:91258911-91262062 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 91258911	 91259323	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20583_PI429285431	0.9092401	A	0.9016182	A	1.00529707866907	0	lncRNA	22224-1_{1..768}	lnc-UBXN4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBXN4-2:2	chr2	136764766	136765533	+	lnc-UBXN4-2	lnc-UBXN4-2:2	ENSG00000231890.1	AC093391.2	NA	"hg19_refFlat_DARS:range=chr2:136664886-1367430385'pad=0,hg19_refFlat_DARS:range=chr2:136664886-1367430385'pad=0 3'pad=0 strand=- repeatMasking=none,-97.00"	NA	inter
CUST_225_PI429285431	4.004201	P	3.8277152	P	1.13012769942372	0	lncRNA	215-1_{1..815}	"transcript_id ""ENST00000454285.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454285.1"" | genecode_v17"	chr1	 48154135	 48154949	+	ENSG00000227947.1	ENST00000454285.1	RP11-543D5.1	RP11-543D5.1-001	NA	NA	NA	inter
CUST_40331_PI429285431	1.0517037	A	0.90021706	A	1.11071342868582	0	lncRNA	41135-1_{1..603}	n408373|NR_029462_5|lncRNA|Homosapiens||RefGeneNoncode|NR_029462_5||-0.6053240|-0.2807033	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408373|NR_029462_5|lncRNA|Homosapiens||RefGeneNoncode|NR_029462_5||-0.6053240|-0.2807033	chr6	  2896839	  2897441	+	NA	NA	NA	NA	SERPINB9	NA	chr6:2887504-2903545	inner
CUST_25005_PI429285431	1.213533	A	1.0332395	A	1.13311438116293	0	lncRNA	26545-1_{1..335}	lnc-DYNLL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DYNLL2-2:1	chr17	 55999757	 56000091	+	lnc-DYNLL2-2	lnc-DYNLL2-2:1	ENSG00000264914.1	RP11-343K8.3	NA	NA	NA	inner
LNCA_21_P0010708	1.5087646	A	0.925994	A	1.49772276564288	0	lncRNA	ENST00000424953	NA	NA	NA	NA	XLOC_l2_000267	NA	ENST00000424953	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000267), lincRNA [TCONS_l2_00002080]"	chr1:74165461-74165520	hs|1p31.1	Agilent_HUMAN_G3V2	ENST00000424953	ENST00000424953	chr1	 74165461	 74165520	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28885_PI429285431	1.7641134	A	2.6805336	A	0.529822053016279	0	lncRNA	30600-1_{1..333}	n326307|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086125|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086125|-0.7792260|-0.2296734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326307|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086125|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086125|-0.7792260|-0.2296734	chr1	182564827	182565159	+	NA	NA	NA	NA	RNASEL	NA	chr1:182554827-182558394	inner
CUST_23136_PI429285431	0.9090233	A	0.9188759	A	0.993193964775906	0	lncRNA	24707-1_{1..450}	lnc-MYCBP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYCBP2-1:1	chr13	 78180612	 78181061	-	lnc-MYCBP2-1	lnc-MYCBP2-1:1	ENSG00000224347.1	SCEL-AS1	SCEL	NA	chr13:78170612-78190686	inner
CUST_41929_PI429285431	0.948203	A	0.94057256	A	1.00530302951954	0	lncRNA	43677-1_{1..120}	ENST00000408337 ncrna:miRNA chromosome:GRCh37:3:71591121:71591240:-1 gene:ENSG00000221264 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408337 ncrna:miRNA chromosome:GRCh37:3:71591121:71591240:-1 gene:ENSG00000221264 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 71591121	 71591240	-	ENSG00000221264	ENST00000408337	NA	NA	FOXP1	NA	chr3:71581121-71601240	inner
CUST_41151_PI429285431	1.0198731	A	0.91407967	A	1.07608603608116	0	lncRNA	41957-1_{1..115}	ENST00000390180 ncrna:miRNA chromosome:GRCh37:17:57215119:57215233:-1 gene:ENSG00000211514 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390180 ncrna:miRNA chromosome:GRCh37:17:57215119:57215233:-1 gene:ENSG00000211514 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 57215119	 57215233	-	ENSG00000211514	ENST00000390180	NA	NA	SKA2	NA	chr17:57205119-57225233	inner
CUST_3142_PI429285431	0.91541016	A	0.9107369	A	1.00324450905535	0	lncRNA	3121-1_{1..439}	"transcript_id ""ENST00000517953.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517953.1"" | genecode_v17"	chr8	 62747476	 62747914	+	ENSG00000254119.1	ENST00000517953.1	RP11-705O24.1	RP11-705O24.1-003	NA	NA	NA	inter
CUST_50064_PI429285431	1.2874026	A	0.9239833	A	1.28647132477029	0	lncRNA	53797-1_{1..1747}	hg19_lincRNAsTranscripts_TCONS_l2_00027786 range=chr8:58134110-58153837 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027786 range=chr8:58134110-58153837 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 58134110	 58135856	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47693_PI429285431	4.4288645	P	4.9059997	P	0.718402761081051	0	lncRNA	51666-1_{1..3000}	"gi|385137097|ref|NR_047635.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 65, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137097|ref|NR_047635.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 65, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047635.1	NA	NA	NA	NA	NA	inter
CUST_4820_PI429285431	2.3767862	A	2.4115086	A	0.976219584590836	0	lncRNA	4763-1_{1..576}	"transcript_id ""ENST00000556479.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556479.1"" | genecode_v17"	chr14	 51800111	 51800686	+	ENSG00000258479.1	ENST00000556479.1	LINC00640	LINC00640-001	NA	NA	NA	inter
CUST_49186_PI429285431	0.9315055	A	0.92069983	A	1.00751803930377	0	lncRNA	53010-1_{1..1149}	hg19_lincRNAsTranscripts_TCONS_l2_00021339 range=chr4:147030377-147043080 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021339 range=chr4:147030377-147043080 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	147030377	147031525	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46282_PI429285431	0.91569126	A	0.914501	A	1.00082536579017	0	lncRNA	50519-1_{1..2260}	"gi|310123075|ref|XR_110265.1| PREDICTED: Homo sapiens PRMT5 antisense RNA 1 (PRMT5-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310123075|ref|XR_110265.1| PREDICTED: Homo sapiens PRMT5 antisense RNA 1 (PRMT5-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_110265.1	NA	NA	NA	"hg19_refFlat_PRMT5:range=chr14:23390113-233984345'pad=0,hg19_refFlat_PRMT5:range=chr14:23390113-233984345'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10;hg19_refFlat_PRMT5:range=chr14:23390113-233985705'pad=0,hg19_refFlat_PRMT5:range=chr14:23390113-233985705'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10"	NA	Unknown
CUST_9114_PI429285431	1.7138572	A	1.4704598	A	1.18377705615539	0	lncRNA	10634-1_{1..3000}	lnc-XRN2-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-XRN2-2:8	chr20	 21224883	 21227882	+	lnc-XRN2-2	lnc-XRN2-2:8	ENSG00000088970	PLK1S1	PLK1S1	NA	chr20:21214883-21227260	inner
CUST_3469_PI429285431	1.026798	A	0.91642964	A	1.07950382854454	0	lncRNA	3440-1_{1..928}	"transcript_id ""ENST00000442086.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442086.1"" | genecode_v17"	chr9	 92503174	 92504101	-	ENSG00000236507.1	ENST00000442086.1	RP5-1050E16.1	RP5-1050E16.1-001	NA	NA	NA	inter
CUST_44237_PI429285431	4.448204	P	4.385379	P	1.04450905544083	0	lncRNA	48886-1_{1..2079}	"gi|392306975|ref|NR_003111.2| Homo sapiens ribosomal protein L32 pseudogene 3 (RPL32P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|392306975|ref|NR_003111.2| Homo sapiens ribosomal protein L32 pseudogene 3 (RPL32P3), non-coding RNA"	Chr3	129101677	129103755	-	132241	NR_003111.2	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40"	NA	inter
CUST_21772_PI429285431	8.814618	P	8.920063	P	0.929518188045102	0	lncRNA	23382-1_{1..420}	lnc-SLC7A5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC7A5-1:1	chr16	 87927036	 87927455	-	lnc-SLC7A5-1	lnc-SLC7A5-1:1	ENSG00000260603.1	GS1-21A4.1	CA5A	"hg19_refFlat_RPS10:range=chr6:34385283-343929985'pad=0,hg19_refFlat_RPS10:range=chr6:34385283-343929985'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_RPS10-NUDT3:range=chr6:34256530-343929985'pad=0,hg19_refFlat_RPS10-NUDT3:range=chr6:34256530-343929985'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60chr16:87921625-87937291"	NA	inner
CUST_30710_PI429285431	3.8744535	P	3.9300508	P	0.962195995307916	0	lncRNA	32492-1_{1..778}	n336225|X98178|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325046|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325046|5.3523000|-0.2279535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336225|X98178|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325046|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325046|5.3523000|-0.2279535	chr2	202131210	202131987	+	NA	NA	NA	NA	CASP8	NA	chr2:202121210-202152434	inner
CUST_30901_PI429285431	13.023403	P	13.825634	P	0.573461683797957	0	lncRNA	32689-1_{1..201}	n336934|BC017047|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000333832|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000333832|-1.1457200|-0.3334616	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336934|BC017047|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000333832|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000333832|-1.1457200|-0.3334616	chrM	      176	      376	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8731_PI429285431	6.5396037	P	6.931686	P	0.762028943216975	0	lncRNA	10274-1_{1..1962}	lnc-C12orf61-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C12orf61-2:1	chr12	 62653260	 62655221	-	lnc-C12orf61-2	lnc-C12orf61-2:1	ENSG00000245867	ENST00000500610	USP15	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30chr12:62654187-62663509"	NA	inter
CUST_19323_PI429285431	5.5916023	P	5.688315	P	0.935161408360743	0	lncRNA	20989-1_{1..1114}	lnc-AC005481.5.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC005481.5.1-1:1	chr7	157649982	157651095	+	lnc-AC005481.5.1-1	lnc-AC005481.5.1-1:1	ENSG00000233038.1	AC011899.9	PTPRN2	NA	chr7:157639982-157660544	inner
CUST_23006_PI429285431	3.8583512	P	4.0299835	P	0.887837591796331	0	lncRNA	24580-1_{1..3000}	lnc-AC007663.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AC007663.1-2:2	chr22	 20350023	 20353022	+	lnc-AC007663.1-2	lnc-AC007663.1-2:2	ENSG00000188424.4	XXbac-B33L19.3	NA	NA	NA	inter
CUST_13519_PI429285431	10.654505	P	10.241999	P	1.33099578266808	0	lncRNA	15159-1_{1..292}	lnc-GPR125-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR125-1:1	chr4	 22348356	 22348647	-	lnc-GPR125-1	lnc-GPR125-1:1	XLOC_003904	linc-KCNIP4-2	NA	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.91"	NA	inter
CUST_1720_PI429285431	0.9205918	A	0.9242964	A	0.997435461018033	0	lncRNA	1705-1_{1..649}	"transcript_id ""ENST00000513616.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513616.1"" | genecode_v17"	chr4	 27264128	 27264776	-	ENSG00000251325.1	ENST00000513616.1	RP11-415C15.3	RP11-415C15.3-001	NA	NA	NA	inter
CUST_2837_PI429285431	0.9122967	A	1.094531	A	0.881337013288731	0	lncRNA	2821-1_{1..812}	"transcript_id ""ENST00000426205.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426205.1"" | genecode_v17"	chr7	 54398472	 54399283	+	ENSG00000231427.1	ENST00000426205.1	RP11-436F9.1	RP11-436F9.1-002	NA	NA	NA	inter
CUST_2313_PI429285431	1.9605083	A	2.4420214	A	0.71622605135363	0	lncRNA	2305-1_{1..541}	"transcript_id ""ENST00000513687.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513687.1"" | genecode_v17"	chr5	111964554	111965094	+	ENSG00000250358.1	ENST00000513687.1	RP11-159K7.2	RP11-159K7.2-002	NA	NA	NA	inter
LNCA_21_P0010046	7.7035546	P	7.5391564	P	1.12069849685461	0	lncRNA	TCONS_00028417	NA	NA	NA	NA	XLOC_013770	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013770), lincRNA [TCONS_00028417]"	chr20:46471030-46470971	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028417	TCONS_00028417	chr20	 46470971	 46471030	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5047_PI429285431	2.5639915	A	4.770116	P	0.216715688196094	0	lncRNA	4987-1_{1..1937}	"transcript_id ""ENST00000557661.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557661.1"" | genecode_v17"	chr14	102023641	102025577	-	ENSG00000258498.1	ENST00000557661.1	DIO3OS	DIO3OS-008	DIO3	NA	chr14:102027688-102029789	inter
CUST_34104_PI429285431	5.074568	P	5.530936	P	0.728818759945982	0	lncRNA	35628-1_{1..2106}	n340929|AK095144|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3394|NULL|-1.2254200|-0.1307661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340929|AK095144|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3394|NULL|-1.2254200|-0.1307661	chr11	   506462	   508567	+	NA	NA	NA	NA	RNH1	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80chr11:496462-507273"	NA	inner
CUST_27001_PI429285431	1.3182659	A	0.9142597	A	1.32317712626617	0	lncRNA	28529-2_{3001..3200}	n324103|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000143026|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000143026|-1.2197600|-0.4164186	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324103|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000143026|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000143026|-1.2197600|-0.4164186	chr9	 42356043	 42356242	-	NA	NA	NA	NA	LOC100289006	"hg19_refFlat_GTF2I:range=chr7:74103463-741731685'pad=0,hg19_refFlat_GTF2I:range=chr7:74103463-741731685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_PARG:range=chr10:51027386-513710705'pad=0,hg19_refFlat_PARG:range=chr10:51027386-513710705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50chr9:42343043-42366815"	NA	inter
CUST_43762_PI429285431	1.0854224	A	1.715324	A	0.646220489725257	0	lncRNA	48499-1_{1..983}	"gi|397138931|ref|XR_110856.2| PREDICTED: Homo sapiens uncharacterized LOC100506929, transcript variant 1 (LOC100506929), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397138931|ref|XR_110856.2| PREDICTED: Homo sapiens uncharacterized LOC100506929, transcript variant 1 (LOC100506929), misc_RNA"	NA	NA	NA	NA	NA	XR_110856.2	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70"	NA	Unknown
CUST_47355_PI429285431	0.9066112	A	1.1785338	A	0.828215093544321	0	lncRNA	51406-1_{1..518}	"gi|336455045|ref|NR_038871.1| Homo sapiens C21orf91 overlapping transcript 1 (non-protein coding) (C21orf91-OT1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336455045|ref|NR_038871.1| Homo sapiens C21orf91 overlapping transcript 1 (non-protein coding) (C21orf91-OT1), transcript variant 1, non-coding RNA"	Chr21	 19149721	 19150238	-	246312	NR_038871.1	NA	NA	NA	NA	NA	inter
CUST_22900_PI429285431	1.0510756	A	0.90865386	A	1.10375635165296	0	lncRNA	24477-1_{1..1657}	lnc-C10orf108-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf108-2:1	chr10	   675799	   677455	+	lnc-C10orf108-2	lnc-C10orf108-2:1	ENSG00000225140.1	RP11-809C18.3	DIP2C	NA	chr10:665799-687195	inner
CUST_46418_PI429285431	0.91304314	A	0.9113165	A	1.00119753211749	0	lncRNA	50631-1_{1..937}	"gi|254281280|ref|NR_028067.1| Homo sapiens olfactory receptor, family 4, subfamily N, member 3 pseudogene (OR4N3P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254281280|ref|NR_028067.1| Homo sapiens olfactory receptor, family 4, subfamily N, member 3 pseudogene (OR4N3P), non-coding RNA"	Chr15	 22413462	 22414398	+	390539	NR_028067.1	NA	NA	NA	NA	NA	inter
CUST_41226_PI429285431	1.2836776	A	0.9098441	A	1.29579141080539	0	lncRNA	42129-1_{1..74}	ENST00000582617 ncrna:miRNA chromosome:GRCh37:2:87421909:87421982:1 gene:ENSG00000264793 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582617 ncrna:miRNA chromosome:GRCh37:2:87421909:87421982:1 gene:ENSG00000264793 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 87421909	 87421982	+	ENSG00000264793	ENST00000582617	NA	NA	NA	NA	NA	inter
CUST_30889_PI429285431	1.2418953	A	1.0058362	A	1.17777103599534	0	lncRNA	32677-1_{1..417}	n336902|AY927501|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332663|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332663|-1.3863400|-0.2356238	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336902|AY927501|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332663|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332663|-1.3863400|-0.2356238	chr13	114166061	114166477	-	NA	NA	NA	NA	TMCO3	NA	chr13:114156061-114178788	inner
CUST_49001_PI429285431	3.1344206	P	3.0495644	A	1.06058202304826	0	lncRNA	52832-2_{3001..3821}	hg19_lincRNAsTranscripts_TCONS_l2_00019720 range=chr3:197332348-197354685 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019720 range=chr3:197332348-197354685 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	197335348	197336168	-	NA	NA	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_33356_PI429285431	1.0864371	A	0.9150788	A	1.12611822809141	0	lncRNA	34936-1_{1..901}	n340074|BC039448|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2529|NULL|-0.8806890|-0.3595105	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340074|BC039448|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2529|NULL|-0.8806890|-0.3595105	chr4	 66533080	 66533980	-	NA	NA	NA	NA	EPHA5	NA	chr4:66523080-66535653	inner
CUST_47575_PI429285431	2.104962	A	2.7643793	A	0.633133966171907	0	lncRNA	51579-1_{1..894}	"gi|70608117|ref|NR_002191.2| Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9 (PPP1R2P9), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|70608117|ref|NR_002191.2| Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9 (PPP1R2P9), non-coding RNA"	ChrX	 42636617	 42637510	-	80316	NR_002191.2	NA	NA	NA	NA	NA	inter
CUST_35905_PI429285431	0.9256128	A	0.91924065	A	1.00442660641153	0	lncRNA	37279-4_{9001..12000}	n344554|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_102|NULL|-1.4895300|-0.3671434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344554|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_102|NULL|-1.4895300|-0.3671434	chr4	124569705	124572704	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23919_PI429285431	2.1514072	A	1.9771254	A	1.12840252552814	0	lncRNA	25476-1_{1..341}	lnc-METTL11B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-METTL11B-2:1	chr1	169993691	169994031	+	lnc-METTL11B-2	lnc-METTL11B-2:1	ENSG00000232959.1	RP11-332H17.1	KIFAP3	"hg19_refFlat_KIFAP3:range=chr1:169890817-1700436085'pad=0,hg19_refFlat_KIFAP3:range=chr1:169890817-1700436085'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_KIFAP3:range=chr1:169890817-1700109025'pad=0,hg19_refFlat_KIFAP3:range=chr1:169890817-1700109025'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_KIFAP3:range=chr1:169890817-1700244895'pad=0,hg19_refFlat_KIFAP3:range=chr1:169890817-1700244895'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80chr1:169983691-170003824"	NA	inner
CUST_13458_PI429285431	0.8989868	A	0.8975286	A	1.0010112581958	0	lncRNA	15096-1_{1..528}	lnc-OR13C4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-OR13C4-3:1	chr9	106192065	106192592	-	lnc-OR13C4-3	lnc-OR13C4-3:1	XLOC_007811	linc-GRIN3A-2	NA	NA	NA	inter
CUST_14576_PI429285431	1.3058319	A	1.4445634	A	0.908317448968577	0	lncRNA	16242-1_{1..463}	lnc-TCFL5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCFL5-2:1	chr20	 61423254	 61423716	-	lnc-TCFL5-2	lnc-TCFL5-2:1	XLOC_013838	linc-GATA5-4	C20orf20	NA	chr20:61427805-61431945	inter
CUST_24398_PI429285431	2.8632362	A	2.0041885	A	1.81384062810616	0	lncRNA	25951-1_{1..550}	lnc-C10orf108-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf108-1:1	chr10	   712158	   712707	+	lnc-C10orf108-1	lnc-C10orf108-1:1	ENSG00000242357.1	RP11-809C18.1	DIP2C	NA	chr10:702158-722562	inner
CUST_20900_PI429285431	3.914522	P	3.7507772	P	1.12019104477362	0	lncRNA	22531-1_{1..504}	lnc-C17orf51-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf51-5:1	chr17	 22024341	 22024844	-	lnc-C17orf51-5	lnc-C17orf51-5:1	ENSG00000243655.2	RP11-846F4.12	MTRNR2L1	NA	chr17:22022437-22023991	inter
CUST_34416_PI429285431	0.91905123	A	1.402911	A	0.715061993849689	0	lncRNA	35896-1_{1..1096}	n341286|BC036938|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3755|NULL|1.5267600|-0.2425696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341286|BC036938|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3755|NULL|1.5267600|-0.2425696	chr7	102613968	102615063	+	NA	NA	NA	NA	FBXL13	NA	chr7:102603968-102639303	inner
CUST_13536_PI429285431	2.9043207	A	2.7627645	A	1.10309435537186	0	lncRNA	15175-2_{3001..3141}	lnc-DLGAP2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLGAP2-4:1	chr8	  1270621	  1270761	+	lnc-DLGAP2-4	lnc-DLGAP2-4:1	XLOC_006684	linc-DLGAP2-4	NA	NA	NA	inter
CUST_16636_PI429285431	1.0653572	A	1.112855	A	0.967613095677455	0	lncRNA	18338-1_{1..805}	lnc-SLC35F5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC35F5-2:1	chr2	114578103	114578907	-	lnc-SLC35F5-2	lnc-SLC35F5-2:1	XLOC_002283	linc-SLC35F5-1	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90"	NA	inter
CUST_43652_PI429285431	1.2577498	A	0.93070966	A	1.25443710614853	0	lncRNA	48409-1_{1..3000}	"gi|371872833|ref|NR_045818.1| Homo sapiens transmembrane and coiled-coil domains 1 (TMCO1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371872833|ref|NR_045818.1| Homo sapiens transmembrane and coiled-coil domains 1 (TMCO1), transcript variant 4, non-coding RNA"	Chr1	165693528	165696527	-	54499	NR_045818.1	NA	NA	NA	NA	NA	inter
CUST_22695_PI429285431	1.2969518	A	1.6611044	A	0.776925085761872	0	lncRNA	24278-1_{1..449}	lnc-MESP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-MESP2-1:1	chr15	 90248534	 90248982	+	lnc-MESP2-1	lnc-MESP2-1:1	ENSG00000259561.1	RP11-300G22.2	WDR93	NA	chr15:90238534-90258646	inner
CUST_22625_PI429285431	5.9257007	P	6.3199234	P	0.760899225999165	0	lncRNA	24211-1_{1..302}	lnc-RP11-392O18.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-392O18.1.1-1:1	chr3	150437656	150437957	+	lnc-RP11-392O18.1.1-1	lnc-RP11-392O18.1.1-1:1	ENSG00000240137.1	RP11-103G8.2	NA	"hg19_refFlat_FAM194A:range=chr3:150377679-1504216855'pad=0,hg19_refFlat_FAM194A:range=chr3:150377679-1504216855'pad=0 3'pad=0 strand=- repeatMasking=none,-96.10"	NA	inter
CUST_48905_PI429285431	4.6980186	P	4.951153	P	0.839071466422593	0	lncRNA	52747-1_{1..488}	hg19_lincRNAsTranscripts_TCONS_l2_00019486 range=chr3:125567021-125592620 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019486 range=chr3:125567021-125592620 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	125567021	125567508	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2644_PI429285431	3.3345146	P	2.692048	A	1.56099573981927	0	lncRNA	2631-1_{1..535}	"transcript_id ""ENST00000434437.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434437.1"" | genecode_v17"	chr6	138266503	138267037	+	ENSG00000229922.1	ENST00000434437.1	RP11-240M16.1	RP11-240M16.1-002	NA	NA	NA	inter
CUST_9673_PI429285431	0.90466785	A	0.90019697	A	1.00310378466263	0	lncRNA	11190-1_{1..2004}	lnc-CYP7A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CYP7A1-1:1	chr8	 59184563	 59186566	-	lnc-CYP7A1-1	lnc-CYP7A1-1:1	XLOC_007090	linc-IMPAD1-2	NA	NA	NA	inter
CUST_2143_PI429285431	3.898881	P	4.082484	P	0.880501276068656	0	lncRNA	2134-1_{1..800}	"transcript_id ""ENST00000506463.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506463.1"" | genecode_v17"	chr5	 38710469	 38711268	-	ENSG00000249911.1	ENST00000506463.1	RP11-122C5.1	RP11-122C5.1-001	NA	NA	NA	inter
CUST_5_PI429285431	6.7258787	P	6.509175	P	1.16207541652867	0	lncRNA	4-2_{3001..3398}	"transcript_id ""ENST00000407635.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000407635.2"" | genecode_v17"	chr2	241628751	241629148	+	ENSG00000219159.3	ENST00000407635.2	AC011298.2	AC011298.2-001	AQP12B	NA	chr2:241615751-241622317	inter
CUST_34662_PI429285431	0.9232322	A	0.918754	A	1.00310887426101	0	lncRNA	36114-1_{1..1000}	n341564|BC039482|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4035|NULL|-1.1440700|-0.3534145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341564|BC039482|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4035|NULL|-1.1440700|-0.3534145	chr8	 96998335	 96999334	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90"	NA	inter
CUST_31252_PI429285431	0.9059322	A	0.90657765	A	0.999552708217117	0	lncRNA	33043-1_{1..1873}	n337707|AK129708|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|89|NULL|0.0365812|-0.2167830	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337707|AK129708|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|89|NULL|0.0365812|-0.2167830	chr15	 40550701	 40552573	+	NA	NA	NA	NA	PAK6	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10chr15:40540701-40562571"	NA	inner
LNCA_21_P0003815	1.7410266	A	1.174669	A	1.48078029268451	0	lncRNA	TCONS_00008693	NA	NA	NA	NA	XLOC_004206	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004206), lincRNA [TCONS_00008693]"	chr4:185396688-185396629	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00008693	TCONS_00008693	chr4	185396629	185396688	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20913_PI429285431	2.8770127	A	2.6719918	A	1.15270304562881	0	lncRNA	22544-1_{1..373}	lnc-PLCB4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PLCB4-2:1	chr20	  8230104	  8230476	+	lnc-PLCB4-2	lnc-PLCB4-2:1	ENSG00000225479.1	PLCB1-IT1	PLCB1	NA	chr20:8220104-8240389	inner
CUST_6275_PI429285431	1.2787228	A	1.3514439	A	0.950842899222895	0	lncRNA	6199-1_{1..788}	"transcript_id ""ENST00000582805.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582805.1"" | genecode_v17"	chr18	 75683770	 75684557	-	ENSG00000265843.1	ENST00000582805.1	RP11-671C19.1	RP11-671C19.1-003	NA	NA	NA	inter
CUST_46012_PI429285431	6.4051566	P	6.6189356	P	0.862275623046769	0	lncRNA	50296-1_{1..999}	"gi|406362859|ref|NR_073172.1| Homo sapiens uncharacterized LOC101055625 (LOC101055625), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|406362859|ref|NR_073172.1| Homo sapiens uncharacterized LOC101055625 (LOC101055625), transcript variant 3, non-coding RNA"	Chr12	 29542227	 29543225	+	101055625	NR_073172.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0010305	0.933845	A	0.95415497	A	0.98602083039366	0	lncRNA	TCONS_00029195	NA	NA	NA	NA	XLOC_013863	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013863), lincRNA [TCONS_00029195]"	chr21:16216461-16216520	hs|21q11.2	Agilent_HUMAN_G3V2	TCONS_00029195	TCONS_00029195	chr21	 16216461	 16216520	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9694_PI429285431	10.620472	P	10.486624	P	1.09721633056355	0	lncRNA	11209-1_{1..322}	lnc-PLEKHO1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLEKHO1-1:2	chr1	150153147	150153468	+	lnc-PLEKHO1-1	lnc-PLEKHO1-1:2	XLOC_000401	linc-CA14	NA	NA	NA	inter
CUST_37986_PI429285431	2.5772748	A	1.2652432	A	2.48290936674004	0	lncRNA	39073-1_{1..1210}	n346541|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2091|NULL|-1.5900900|-0.1022322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346541|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2091|NULL|-1.5900900|-0.1022322	chr2	   740108	   741317	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43025_PI429285431	9.615416	P	9.971284	P	0.781399371371501	0	lncRNA	46386-1_{1..126}	ENST00000408512 ncrna:snRNA chromosome:GRCh37:12:890299:890424:1 gene:ENSG00000221439 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408512 ncrna:snRNA chromosome:GRCh37:12:890299:890424:1 gene:ENSG00000221439 gene_biotype:snRNA transcript_biotype:snRNA	chr12	   890299	   890424	+	ENSG00000221439	ENST00000408512	NA	NA	WNK1	NA	chr12:880299-900424	inner
CUST_43230_PI429285431	6.0610094	P	5.551058	P	1.4240022244931	0	lncRNA	48045-1_{1..1467}	ENST00000598112 havana:sense_intronic chromosome:GRCh37:19:16744614:16746080:-1 gene:ENSG00000269044 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000598112 havana:sense_intronic chromosome:GRCh37:19:16744614:16746080:-1 gene:ENSG00000269044 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 16744614	 16746080	-	ENSG00000269044	ENST00000598112	NA	NA	MED26	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr19:16734614-16739015"	NA	inter
CUST_28147_PI429285431	1.1079369	A	0.9117466	A	1.14566900852472	0	lncRNA	29772-2_{3001..3503}	n325423|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323615|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323615|-1.0837300|-0.3726597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325423|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323615|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323615|-1.0837300|-0.3726597	chr2	 14289448	 14289950	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37676_PI429285431	0.9049953	A	0.90869236	A	0.997440673958271	0	lncRNA	38770-1_{1..3000}	n346164|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1714|NULL|-1.4388000|-0.2546459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n346164|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1714|NULL|-1.4388000|-0.2546459	chr19	 40169938	 40172937	+	NA	NA	NA	NA	LGALS14	"hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60chr19:40188546-40197036"	NA	inter
CUST_6896_PI429285431	6.933229	P	7.0985026	P	0.891759385613043	0	lncRNA	6846-1_{1..475}	"transcript_id ""ENST00000424921.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424921.1"" | genecode_v17"	chr21	 45578898	 45579372	-	ENSG00000225331.1	ENST00000424921.1	AP001055.6	AP001055.6-001	NA	NA	NA	inter
CUST_6867_PI429285431	1.2169396	A	0.92206323	A	1.22677984533984	0	lncRNA	6817-1_{1..407}	"transcript_id ""ENST00000415824.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415824.1"" | genecode_v17"	chr21	 40252231	 40252637	-	ENSG00000205622.5	ENST00000415824.1	AF064858.6	AF064858.6-002	NA	NA	NA	inter
CUST_40249_PI429285431	6.120826	P	6.126854	P	0.995830425709452	0	lncRNA	41064-1_{1..2011}	n408169|NR_028292|lncRNA|Homosapiens||RefGeneNoncode|NR_028292||4.6222600|-0.1176848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408169|NR_028292|lncRNA|Homosapiens||RefGeneNoncode|NR_028292||4.6222600|-0.1176848	chr1	 71318035	 71320045	-	NA	NA	NA	NA	PTGER3	NA	chr1:71318036-71513491	inner
CUST_9849_PI429285431	2.116766	A	2.3128166	A	0.872936973862449	0	lncRNA	11369-1_{1..2080}	lnc-TNP1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNP1-5:1	chr2	217931334	217933413	-	lnc-TNP1-5	lnc-TNP1-5:1	XLOC_002488	linc-TNP1-3	NA	NA	NA	inter
CUST_21358_PI429285431	2.8359706	A	2.0357366	A	1.74138354990051	0	lncRNA	22982-1_{1..507}	lnc-NIPA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NIPA2-1:1	chr15	 22782237	 22782743	-	lnc-NIPA2-1	lnc-NIPA2-1:1	ENSG00000259596.1	RP11-566K19.3	TUBGCP5	NA	chr15:22777497-22792336	inter
CUST_19456_PI429285431	1.4133976	A	1.715261	A	0.811203959899484	0	lncRNA	21115-1_{1..549}	lnc-TRIM40-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM40-3:1	chr6	 30082348	 30082896	+	lnc-TRIM40-3	lnc-TRIM40-3:1	ENSG00000231226.1	TRIM31-AS1	TRIM31	NA	chr6:30072348-30080867	inter
CUST_46915_PI429285431	3.1507502	A	2.1562452	A	1.99239680137527	0	lncRNA	51030-2_{3001..3712}	"gi|241896901|ref|NR_027751.1| Homo sapiens family with sequence similarity 20, member A (FAM20A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|241896901|ref|NR_027751.1| Homo sapiens family with sequence similarity 20, member A (FAM20A), transcript variant 2, non-coding RNA"	Chr17	 66534257	 66534968	-	54757	NR_027751.1	NA	NA	NA	NA	NA	inter
CUST_35282_PI429285431	0.92414796	A	0.9950986	A	0.952010479783969	0	lncRNA	36685-1_{1..3000}	n342300|BC038299|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4792|NULL|0.3847960|-0.3144386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n342300|BC038299|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4792|NULL|0.3847960|-0.3144386	chr1	121138613	121141612	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28304_PI429285431	1.4624757	A	0.93097496	A	1.44543200083059	0	lncRNA	29947-1_{1..739}	n325607|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000072580|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000072580|-0.3579190|-0.1657163	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325607|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000072580|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000072580|-0.3579190|-0.1657163	chr14	100485067	100485805	+	NA	NA	NA	NA	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80"	NA	inter
CUST_51496_PI429285431	4.9796834	P	5.106578	P	0.91580059027071	0	lncRNA	55072-1_{1..1539}	hg19_lincRNAsTranscripts_TCONS_l2_00010265 range=chr16:71463533-71466202 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010265 range=chr16:71463533-71466202 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 71463533	 71465071	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5098_PI429285431	6.332368	P	7.1218553	P	0.57854965841082	0	lncRNA	5038-1_{1..631}	"transcript_id ""ENST00000566245.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566245.1"" | genecode_v17"	chr15	 24407901	 24408531	-	ENSG00000260551.1	ENST00000566245.1	PWRN2	PWRN2-002	NA	NA	NA	inter
CUST_38629_PI429285431	0.95717597	A	1.6176249	A	0.632681391994658	0	lncRNA	39632-1_{1..935}	n383813|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vog.1||0.3927580|-0.2941258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383813|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vog.1||0.3927580|-0.2941258	chr2	227007509	227008443	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50149_PI429285431	1.6970929	A	1.9444029	A	0.842465784689943	0	lncRNA	53874-1_{1..505}	hg19_lincRNAsTranscripts_TCONS_l2_00029175 range=chr9:2523053-2531123 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029175 range=chr9:2523053-2531123 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	  2523053	  2523557	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14502_PI429285431	0.9233568	A	1.1407671	A	0.860107982586448	0	lncRNA	16168-1_{1..2398}	lnc-MEIS1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MEIS1-3:2	chr2	 66918804	 66921201	+	lnc-MEIS1-3	lnc-MEIS1-3:2	XLOC_001508	linc-ETAA1-6	NA	NA	NA	inter
CUST_15100_PI429285431	6.7910624	P	6.657375	P	1.09709419585726	0	lncRNA	16764-1_{1..406}	lnc-TRIB1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIB1-2:1	chr8	126485378	126485783	+	lnc-TRIB1-2	lnc-TRIB1-2:1	XLOC_006918	linc-POU5F1B-3	NA	NA	NA	inter
CUST_23218_PI429285431	0.9622469	A	0.9641441	A	0.998685825453708	0	lncRNA	24790-1_{1..427}	lnc-NOC3L-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NOC3L-3:3	chr10	 95868475	 95868901	-	lnc-NOC3L-3	lnc-NOC3L-3:3	ENSG00000232913.1	RP11-429H9.4	PLCE1	NA	chr10:95858475-95878506	inner
CUST_5862_PI429285431	4.7742467	P	5.150192	P	0.770600325232043	0	lncRNA	5791-1_{1..506}	"transcript_id ""ENST00000588060.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588060.1"" | genecode_v17"	chr17	 41522075	 41522580	+	ENSG00000267151.1	ENST00000588060.1	hsa-mir-2117	hsa-mir-2117.1-001	NA	NA	NA	inter
CUST_26849_PI429285431	2.2555578	A	2.0857859	A	1.12488061927235	0	lncRNA	28363-1_{1..3000}	n323921|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055622|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055622|0.4184820|-0.2285106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323921|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055622|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055622|0.4184820|-0.2285106	chrX	  2543992	  2546991	+	NA	NA	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40"	NA	inter
CUST_21361_PI429285431	7.8196716	P	7.3318186	P	1.40235635357761	0	lncRNA	22984-1_{1..456}	lnc-AL139147.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL139147.1-1:1	chr1	 66516214	 66516669	-	lnc-AL139147.1-1	lnc-AL139147.1-1:1	ENSG00000227466.1	RP11-397C12.1	PDE4B	NA	chr1:66506214-66526401	inner
CUST_28854_PI429285431	1.4860559	A	1.2690139	A	1.16234794551002	0	lncRNA	30562-1_{1..775}	n326269|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098768|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098768|-0.9772110|-0.3435072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326269|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098768|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098768|-0.9772110|-0.3435072	chr1	201522902	201523676	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_277_PI429201921	1.1076062	A	0.9238454	A	1.13584092583322	0	lncRNA	198-1_{1..3000}	TC05002830.hg.1	 TCONS_l2_00022763-XLOC_l2_011924 // Broad TUCP // linc-IRX2-8 chr5:-:4968059-4974687 // chr5 // 100 // 100 // 0 // --- // 0///TCONS_l2_00023652-XLOC_l2_011924 // Broad TUCP // linc-IRX2-8 chr5:-:4967876-4970538 // chr5 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr5:-:4967876-4970538	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00023652-XLOC_l2_011924	linc-IRX2-8	chr5	  4967876	  4970538	-	NA	NA	NA	NA	PTP4A2	NA	chr1:32388621-32403988	Unknown
CUST_7402_PI429285431	1.5108957	A	1.1704556	A	1.26614277707654	0	lncRNA	9047-1_{1..2762}	lnc-ZNF382-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF382-2:1	chr19	 37072544	 37075305	+	lnc-ZNF382-2	lnc-ZNF382-2:1	ENSG00000245218	ENST00000499057	ZNF529	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF182:range=chrX:47835566-478479955'pad=0,hg19_refFlat_ZNF182:range=chrX:47835566-478479955'pad=0 3'pad=0 strand=- repeatMasking=none,-65.00chr19:37062544-37084507"	NA	inter
CUST_1484_PI429285431	1.6879154	A	1.5823162	A	1.07594117239472	0	lncRNA	1471-1_{1..424}	"transcript_id ""ENST00000485006.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000485006.1"" | genecode_v17"	chr3	147657807	147658230	+	ENSG00000239922.1	ENST00000485006.1	RP11-71N10.1	RP11-71N10.1-002	NA	NA	NA	inter
LNCA_21_P0005054	1.0022923	A	0.9298835	A	1.05147081014174	0	lncRNA	TCONS_00012263	NA	NA	NA	NA	XLOC_005816	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005816), lincRNA [TCONS_00012263]"	chr6:116918096-116918037	hs|6q22.1	Agilent_HUMAN_G3V2	TCONS_00012263	TCONS_00012263	chr6	116918037	116918096	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29111_PI429285431	4.9286075	P	4.8929763	P	1.02500517957342	0	lncRNA	30845-1_{1..454}	n326610|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023025|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023025|-0.9829180|-0.1076804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326610|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023025|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023025|-0.9829180|-0.1076804	chr1	 54650968	 54651421	-	NA	NA	NA	NA	CYB5RL	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr1:54640968-54661727"	NA	inner
LNCA_21_P0001383	1.0017896	A	0.9293998	A	1.05145696257641	0	lncRNA	TCONS_00001189	NA	NA	NA	NA	XLOC_000454	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000454), lincRNA [TCONS_00001189]"	chr1:168286821-168286880	hs|1q24.2	Agilent_HUMAN_G3V2	TCONS_00001189	TCONS_00001189	chr1	168286821	168286880	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28255_PI429285431	0.9113962	A	0.9130422	A	0.998859730342865	0	lncRNA	29891-1_{1..682}	n325548|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255476|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255476|-1.3965100|-0.2822471	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325548|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255476|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255476|-1.3965100|-0.2822471	chr17	 48294479	 48295160	+	NA	NA	NA	NA	NA	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50"	NA	inter
CUST_27230_PI429285431	0.92605644	A	0.9175699	A	1.00589975668846	0	lncRNA	28775-1_{1..708}	n324366|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042470|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042470|-0.8186450|-0.3625694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324366|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042470|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042470|-0.8186450|-0.3625694	chr6	140217679	140218386	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20037_PI429285431	0.9110288	A	0.9069754	A	1.00281355341461	0	lncRNA	21688-1_{1..658}	lnc-SREK1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SREK1-2:1	chr5	 65958159	 65958816	+	lnc-SREK1-2	lnc-SREK1-2:1	ENSG00000249057.1	MAST4-IT1	MAST4	NA	chr5:65948159-65968816	inner
CUST_44178_PI429285431	4.3828664	P	2.3897524	A	3.980953444931	0	lncRNA	48835-1_{1..3000}	"gi|213385275|ref|NR_024460.1| Homo sapiens coiled-coil domain containing 66 (CCDC66), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|213385275|ref|NR_024460.1| Homo sapiens coiled-coil domain containing 66 (CCDC66), transcript variant 3, non-coding RNA"	Chr3	 56591184	 56594183	+	285331	NR_024460.1	NA	NA	NA	NA	NA	inter
CUST_5927_PI429285431	2.161186	A	1.1599709	A	2.0016851958509	0	lncRNA	5856-1_{1..912}	"transcript_id ""ENST00000581596.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581596.1"" | genecode_v17"	chr17	 61044178	 61045089	-	ENSG00000266411.1	ENST00000581596.1	RP11-180P8.3	RP11-180P8.3-001	NA	NA	NA	inter
CUST_48141_PI429285431	6.6741533	P	5.9219847	P	1.68432273344277	0	lncRNA	52009-1_{1..3000}	"gi|410169891|ref|XR_133016.3| PREDICTED: Homo sapiens G/T mismatch-specific thymine DNA glycosylase-like (LOC732360), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410169891|ref|XR_133016.3| PREDICTED: Homo sapiens G/T mismatch-specific thymine DNA glycosylase-like (LOC732360), misc_RNA"	NA	NA	NA	NA	NA	XR_133016.3	NA	NA	NA	NA	NA	Unknown
CUST_43713_PI429285431	4.759146	P	4.008931	P	1.68204348112491	0	lncRNA	48460-1_{1..692}	"gi|397139987|ref|XR_159102.1| PREDICTED: Homo sapiens uncharacterized LOC100505630, transcript variant 4 (LOC100505630), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139987|ref|XR_159102.1| PREDICTED: Homo sapiens uncharacterized LOC100505630, transcript variant 4 (LOC100505630), misc_RNA"	NA	NA	NA	NA	NA	XR_159102.1	NA	NA	NA	NA	NA	Unknown
CUST_42828_PI429285431	7.1795435	P	8.023029	P	0.557295535063175	0	lncRNA	45849-1_{1..131}	ENST00000516768 ncrna:snoRNA chromosome:GRCh37:17:58308877:58309007:-1 gene:ENSG00000252577 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516768 ncrna:snoRNA chromosome:GRCh37:17:58308877:58309007:-1 gene:ENSG00000252577 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 58308877	 58309007	-	ENSG00000252577	ENST00000516768	NA	NA	USP32	NA	chr17:58298877-58319007	inner
CUST_42704_PI429285431	1.0591362	A	0.91541374	A	1.10475193652176	0	lncRNA	45630-1_{1..72}	ENST00000516878 ncrna:snoRNA chromosome:GRCh37:6:37151373:37151444:-1 gene:ENSG00000252687 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516878 ncrna:snoRNA chromosome:GRCh37:6:37151373:37151444:-1 gene:ENSG00000252687 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	 37151373	 37151444	-	ENSG00000252687	ENST00000516878	NA	NA	PIM1	NA	chr6:37141373-37143204	inter
CUST_30591_PI429285431	1.6990987	A	1.5850697	A	1.08224639883223	0	lncRNA	32373-1_{1..364}	n335879|X62954|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322550|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322550|2.4609800|-0.0897362	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335879|X62954|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322550|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322550|2.4609800|-0.0897362	chr14	106329409	106329772	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3521_PI429285431	2.53576	A	1.826032	A	1.63549573816756	0	lncRNA	3490-3_{6001..7380}	"transcript_id ""ENST00000439875.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000439875.1"" | genecode_v17"	chr9	115871618	115872997	-	ENSG00000225684.3	ENST00000439875.1	FAM225B	FAM225B-002	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-30.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.62;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90"	NA	inter
CUST_52224_PI429285431	4.3475165	P	4.72799	P	0.768185426821571	0	lncRNA	55737-1_{1..1321}	hg19_lincRNAsTranscripts_TCONS_00030029 range=chrUn_gl000223:150072-164052 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00030029 range=chrUn_gl000223:150072-164052 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrUn_gl000223	   150072	   151392	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48071_PI429285431	3.394805	P	3.3224378	P	1.05144049149932	0	lncRNA	51947-1_{1..880}	"gi|310114415|ref|XR_112469.1| PREDICTED: Homo sapiens uncharacterized LOC100509621 (LOC100509621), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310114415|ref|XR_112469.1| PREDICTED: Homo sapiens uncharacterized LOC100509621 (LOC100509621), misc_RNA"	NA	NA	NA	NA	NA	XR_112469.1	NA	NA	NA	NA	NA	Unknown
CUST_6001_PI429285431	1.4801201	A	0.92513657	A	1.46915186114797	0	lncRNA	5926-2_{3001..4192}	"transcript_id ""ENST00000397549.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000397549.2"" | genecode_v17"	chr17	 77684075	 77685266	+	ENSG00000214105.2	ENST00000397549.2	CTD-2116F7.1	CTD-2116F7.1-001	LOC100652929	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.86;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40chr17:77681138-77686082"	NA	inter
CUST_17019_PI429285431	1.1560522	A	2.247928	A	0.469150985194662	0	lncRNA	18730-1_{1..310}	lnc-CBLB-7:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLB-7:9	chr3	106646682	106646991	-	lnc-CBLB-7	lnc-CBLB-7:9	XLOC_003203	linc-CBLB-3	NA	NA	NA	inter
CUST_13493_PI429285431	3.6274137	P	4.342321	P	0.609244277414796	0	lncRNA	15133-1_{1..830}	lnc-PTGS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTGS1-1:1	chr9	125211209	125212038	+	lnc-PTGS1-1	lnc-PTGS1-1:1	XLOC_007554	linc-OR1J2	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60"	NA	inter
CUST_52053_PI429285431	5.251996	P	5.955103	P	0.614247931761623	0	lncRNA	55585-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00017085 range=chr21:44851213-44859330 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017085 range=chr21:44851213-44859330 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr21	 44854213	 44857212	+	NA	NA	NA	NA	SIK1	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr21:44841213-44847002"	NA	inter
CUST_36341_PI429285431	0.9451628	A	0.92752606	A	1.01229988559259	0	lncRNA	37570-2_{3001..3383}	n344867|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_416|NULL|-1.7083400|-0.2971529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344867|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_416|NULL|-1.7083400|-0.2971529	chr6	  3986648	  3987030	-	NA	NA	NA	NA	NA	"hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0,hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60"	NA	inter
CUST_14884_PI429285431	0.9186984	A	0.9209759	A	0.998422602697234	0	lncRNA	16549-1_{1..3000}	lnc-EIF2AK4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-EIF2AK4-1:2	chr15	 40214988	 40217987	+	lnc-EIF2AK4-1	lnc-EIF2AK4-1:2	XLOC_011218	linc-EIF2AK4	GPR176	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50chr15:40204988-40213093"	NA	inter
CUST_14537_PI429285431	1.2469238	A	0.92330956	A	1.25146178747682	0	lncRNA	16205-1_{1..492}	lnc-TUBGCP3-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TUBGCP3-7:1	chr13	112835463	112835954	-	lnc-TUBGCP3-7	lnc-TUBGCP3-7:1	XLOC_010729	linc-ANKRD10-6	NA	NA	NA	inter
CUST_16666_PI429285431	1.1390635	A	0.92406076	A	1.1607061188217	0	lncRNA	18369-1_{1..1076}	lnc-KLF15-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF15-3:3	chr3	125993797	125994872	-	lnc-KLF15-3	lnc-KLF15-3:3	XLOC_003234	linc-ALDH1L1-1	LOC644662	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60chr3:125985645-126004041"	NA	inter
CUST_35029_PI429285431	0.901787	A	0.89541614	A	1.00442570829397	0	lncRNA	36442-1_{1..1280}	n341972|BC045810|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4453|NULL|-1.0434100|-0.3250070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n341972|BC045810|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4453|NULL|-1.0434100|-0.3250070	chr12	 78720459	 78721738	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48043_PI429285431	2.5042377	A	1.6704224	A	1.78239278762553	0	lncRNA	51923-1_{1..834}	"gi|397138737|ref|XR_110648.2| PREDICTED: Homo sapiens uncharacterized LOC100506098, transcript variant 3 (LOC100506098), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397138737|ref|XR_110648.2| PREDICTED: Homo sapiens uncharacterized LOC100506098, transcript variant 3 (LOC100506098), misc_RNA"	NA	NA	NA	NA	NA	XR_110648.2	NA	NA	NA	NA	NA	Unknown
CUST_22385_PI429285431	7.3667326	P	7.2071056	P	1.11699830763925	0	lncRNA	23975-1_{1..208}	lnc-CCDC117-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC117-1:2	chr22	 29234848	 29235055	+	lnc-CCDC117-1	lnc-CCDC117-1:2	ENSG00000226471.2	CTA-292E10.6	NA	NA	NA	inter
CUST_29624_PI429285431	5.4481373	P	5.5725965	P	0.917347850268624	0	lncRNA	31385-1_{1..430}	n333185|AF432265|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079612|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079612|-0.6021600|-0.0501739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333185|AF432265|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079612|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079612|-0.6021600|-0.0501739	chr21	 43733669	 43734098	+	NA	NA	NA	NA	TFF3	"hg19_refFlat_TFF3:range=chr21:43732366-437355265'pad=0,hg19_refFlat_TFF3:range=chr21:43732366-437355265'pad=0 3'pad=0 strand=- repeatMasking=none,-99.50chr21:43731777-43735706"	NA	inner
CUST_12707_PI429285431	2.6647718	A	1.7639769	A	1.86709443643981	0	lncRNA	14325-1_{1..528}	lnc-PSD2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PSD2-2:2	chr5	139139118	139139645	+	lnc-PSD2-2	lnc-PSD2-2:2	XLOC_004574	linc-PSD2-1	NA	NA	NA	inter
CUST_6417_PI429285431	0.9064948	A	1.0832751	A	0.884675147329483	0	lncRNA	6356-1_{1..573}	"transcript_id ""ENST00000590229.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590229.1"" | genecode_v17"	chr19	 28556174	 28556746	+	ENSG00000267509.1	ENST00000590229.1	CTD-2043I16.1	CTD-2043I16.1-002	NA	NA	NA	inter
CUST_47484_PI429285431	0.9188278	A	0.9212357	A	0.998332362958424	0	lncRNA	51505-1_{1..1050}	"gi|397139765|ref|XR_158960.1| PREDICTED: Homo sapiens uncharacterized LOC100996404 (LOC100996404), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139765|ref|XR_158960.1| PREDICTED: Homo sapiens uncharacterized LOC100996404 (LOC100996404), misc_RNA"	Chr22	 25959167	 25960216	-	100996404	XR_158960.2	NA	NA	NA	NA	NA	inter
CUST_14155_PI429285431	1.3428979	A	1.1499386	A	1.14310608669018	0	lncRNA	15806-1_{1..902}	lnc-LPHN3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LPHN3-2:1	chr4	 63027477	 63028378	+	lnc-LPHN3-2	lnc-LPHN3-2:1	XLOC_003555	linc-STAP1-9	NA	NA	NA	inter
CUST_36510_PI429285431	1.3499513	A	0.9152502	A	1.35163077086682	0	lncRNA	37710-1_{1..379}	n345011|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_560|NULL|-1.2922300|-0.3549385	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345011|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_560|NULL|-1.2922300|-0.3549385	chr8	 94873924	 94874302	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51234_PI429285431	0.9107103	A	1.9338967	A	0.49202843553983	0	lncRNA	54848-3_{6001..6797}	hg19_lincRNAsTranscripts_TCONS_l2_00008417 range=chr15:23094342-23105732 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008417 range=chr15:23094342-23105732 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 23100342	 23101138	+	NA	NA	NA	NA	NIPA1	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr15:23084342-23086843"	NA	inter
CUST_9207_PI429285431	4.440566	P	4.3944273	P	1.03249779454792	0	lncRNA	10719-1_{1..382}	lnc-TTLL7-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TTLL7-2:3	chr1	 84326502	 84326883	-	lnc-TTLL7-2	lnc-TTLL7-2:3	ENSG00000233008	RP11-475O6.1	TTLL7	NA	chr1:84335057-84336653	inter
CUST_49469_PI429285431	0.9162061	A	0.9201832	A	0.997247080599591	0	lncRNA	53264-1_{1..682}	hg19_lincRNAsTranscripts_TCONS_l2_00024971 range=chr6:147283343-147453090 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024971 range=chr6:147283343-147453090 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	147283343	147284024	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003841	1.932559	A	0.91601425	A	2.02306791161104	0	lncRNA	TCONS_00008860	NA	NA	NA	NA	XLOC_003629	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003629), lincRNA [TCONS_00008860]"	chr4:104360855-104360914	hs|4q24	Agilent_HUMAN_G3V2	TCONS_00008860	TCONS_00008860	chr4	104360855	104360914	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10230_PI429285431	2.1723528	A	3.0823	A	0.532204568584139	0	lncRNA	11754-1_{1..265}	lnc-PCTP-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCTP-2:2	chr17	 53725554	 53725818	+	lnc-PCTP-2	lnc-PCTP-2:2	XLOC_012255	linc-PCTP	NA	NA	NA	inter
CUST_1501_PI429285431	3.7428505	P	3.5069993	P	1.17760132517664	0	lncRNA	1488-1_{1..487}	"transcript_id ""ENST00000496084.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000496084.1"" | genecode_v17"	chr3	152365935	152366421	+	ENSG00000244545.1	ENST00000496084.1	RP11-788A4.1	RP11-788A4.1-001	NA	NA	NA	inter
CUST_40882_PI429285431	0.9238833	A	0.9249263	A	0.999277308757876	0	lncRNA	41574-1_{1..1829}	n410682|NR_037932|lncRNA|Homosapiens||RefGeneNoncode|NR_037932||2.1040700|-0.1660153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410682|NR_037932|lncRNA|Homosapiens||RefGeneNoncode|NR_037932||2.1040700|-0.1660153	chr19	 45445494	 45447322	+	NA	NA	NA	NA	CLPTM1	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90chr19:45457842-45462822"	NA	inter
CUST_17335_PI429285431	0.92859197	A	1.28683	A	0.780116758228927	0	lncRNA	19053-1_{1..409}	lnc-CPO-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPO-1:1	chr2	207799580	207799988	+	lnc-CPO-1	lnc-CPO-1:1	XLOC_001823	linc-CPO-1	CPO	NA	chr2:207804278-207809719	inter
CUST_11942_PI429285431	5.086775	P	5.3628044	P	0.825860834936823	0	lncRNA	13522-1_{1..257}	lnc-ATAD2B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATAD2B-1:1	chr2	 23958384	 23958640	-	lnc-ATAD2B-1	lnc-ATAD2B-1:1	XLOC_002024	linc-APOB-12	NA	NA	NA	inter
CUST_45933_PI429285431	4.350278	P	3.3138254	P	2.0511778671172	0	lncRNA	50238-2_{3001..3582}	"gi|367145070|ref|NR_045767.1| Homo sapiens chromosome 11 open reading frame 45 (C11orf45), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|367145070|ref|NR_045767.1| Homo sapiens chromosome 11 open reading frame 45 (C11orf45), transcript variant 3, non-coding RNA"	Chr11	128772460	128773041	-	219833	NR_045767.1	NA	NA	NA	NA	NA	inter
CUST_18279_PI429285431	0.9140948	A	1.0807699	A	0.890893510370378	0	lncRNA	20010-1_{1..1774}	lnc-ZNF180-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF180-1:7	chr19	 45033481	 45035254	-	lnc-ZNF180-1	lnc-ZNF180-1:7	ENSG00000176395	CEACAM20	CEACAM20	NA	chr19:45023481-45033548	inner
CUST_30672_PI429285431	2.9070446	A	2.7658122	A	1.10284680349014	0	lncRNA	32454-1_{1..271}	n336140|X92029|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324507|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324507|-1.0597900|-0.2863512	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336140|X92029|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324507|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324507|-1.0597900|-0.2863512	chr14	 22466234	 22466504	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48186_PI429285431	1.9353343	A	1.3676429	A	1.48214993628413	0	lncRNA	52049-1_{1..478}	"gi|310118091|ref|XR_113300.1| PREDICTED: Homo sapiens uncharacterized LOC100506610 (LOC100506610), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310118091|ref|XR_113300.1| PREDICTED: Homo sapiens uncharacterized LOC100506610 (LOC100506610), misc_RNA"	NA	NA	NA	NA	NA	XR_113300.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014833	1.169278	A	1.0282272	A	1.1027079908032	0	lncRNA	XR_132691	XR_132691	XR_132691	NA	Hs.688891	LOC100507209	uncharacterized LOC100507209	NA	THC2490235	NA	"PREDICTED: Homo sapiens hypothetical LOC100507209 (LOC100507209), miscRNA [XR_132691]"	chr4:114647995-114647936	hs|4q26	Agilent_HUMAN_G3V2	XR_132691	XR_132691	chr4	114647936	114647995	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51612_PI429285431	3.749363	A	3.8627796	P	0.924396306163417	0	lncRNA	55178-1_{1..422}	hg19_lincRNAsTranscripts_TCONS_l2_00011647 range=chr17:38873488-38877280 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011647 range=chr17:38873488-38877280 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 38873488	 38873909	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39018_PI429285431	1.0721691	A	0.91875726	A	1.11219660622607	0	lncRNA	39997-1_{1..1222}	n385352|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wtu.2||3.6787000|-0.2060965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385352|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wtu.2||3.6787000|-0.2060965	chr8	 11225910	 11227131	+	NA	NA	NA	NA	FAM167A	NA	chr8:11278973-11306166	inter
CUST_49338_PI429285431	6.780979	P	6.1444874	P	1.55454416004466	0	lncRNA	53150-1_{1..1323}	hg19_lincRNAsTranscripts_TCONS_l2_00022942 range=chr5:70435443-70498732 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022942 range=chr5:70435443-70498732 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 70435443	 70436765	-	NA	NA	NA	NA	LOC100652875	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30chr5:70501328-70501699"	NA	inter
CUST_19189_PI429285431	4.869286	P	4.575776	P	1.22561851768367	0	lncRNA	20859-1_{1..229}	lnc-PLA2G2C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLA2G2C-2:1	chr1	 20649596	 20649824	-	lnc-PLA2G2C-2	lnc-PLA2G2C-2:1	ENSG00000226664.1	RP4-745E8.2	VWA5B1	NA	chr1:20639596-20659680	inner
CUST_38237_PI429285431	5.607725	P	5.7651467	P	0.896626037415079	0	lncRNA	39297-2_{3001..4135}	n381724|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ody.2||0.7245230|-0.3263076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381724|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ody.2||0.7245230|-0.3263076	chr11	 65269958	 65271092	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47848_PI429285431	1.0602338	A	0.9150434	A	1.10587659199995	0	lncRNA	51753-1_{1..769}	"gi|397140225|ref|XR_159181.1| PREDICTED: Homo sapiens uncharacterized LOC388282 (LOC388282), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397140225|ref|XR_159181.1| PREDICTED: Homo sapiens uncharacterized LOC388282 (LOC388282), misc_RNA"	NA	NA	NA	NA	NA	XR_159181.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004683	0.92572904	A	0.9253664	A	1.00025139448786	0	lncRNA	ENST00000444229	NA	NA	NA	NA	XLOC_005459	NA	ENST00000444229	THC2658658	NA	"BROAD Institute lincRNA (XLOC_005459), lincRNA [TCONS_00011368]"	chr6:126523178-126523237	hs|6q22.32	Agilent_HUMAN_G3V2	ENST00000444229	ENST00000444229	chr6	126523178	126523237	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33426_PI429285431	3.4560978	P	2.5404775	A	1.88637996391156	0	lncRNA	35004-1_{1..932}	n340154|BC047912|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2614|NULL|-0.9598860|-0.3840326	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340154|BC047912|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2614|NULL|-0.9598860|-0.3840326	chr10	119026626	119027557	-	NA	NA	NA	NA	SLC18A2	"hg19_refFlat_SLC18A2:range=chr10:119001205-1190367775'pad=0,hg19_refFlat_SLC18A2:range=chr10:119001205-1190367775'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr10:119016626-119037472"	NA	inner
LNCA_21_P0010241	1.0426675	A	1.2139683	A	0.888041621040136	0	lncRNA	THC2661469	NA	NA	NA	NA	XLOC_013934	NA	NA	THC2661469	NA	"BROAD Institute lincRNA (XLOC_013934), lincRNA [TCONS_00029012]"	chr21:037953183-037953242	hs|21q22.13	Agilent_HUMAN_G3V2	THC2661469	THC2661469	chr21	 37953183	 37953242	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36057_PI429285431	0.92531013	A	0.94288117	A	0.987894550853667	0	lncRNA	37371-2_{3001..6000}	n344653|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_201|NULL|-1.3065500|-0.2698776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n344653|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_201|NULL|-1.3065500|-0.2698776	chr1	 94167463	 94170462	-	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40"	NA	inner
CUST_81_PI429285431	9.451767	P	9.337682	P	1.08228840838579	0	lncRNA	75-1_{1..414}	"transcript_id ""ENST00000458396.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458396.1"" | genecode_v17"	chr18	  5232875	  5233288	+	ENSG00000263753.1	ENST00000458396.1	LINC00667	LINC00667-201	NA	"hg19_refFlat_RPL41:range=chr12:56510572-565113085'pad=0,hg19_refFlat_RPL41:range=chr12:56510572-565113085'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50"	NA	inter
LNCA_21_P0010855	3.5482862	P	3.7796874	P	0.851807182522735	0	lncRNA	TCONS_l2_00003384	NA	NA	NA	NA	XLOC_l2_001851	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001851), lincRNA [TCONS_l2_00003384]"	chr10:6162573-6162514	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_l2_00003384	TCONS_l2_00003384	chr10	  6162514	  6162573	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7166_PI429285431	0.9051161	A	1.4488679	A	0.685984650346765	0	lncRNA	7275-1_{1..278}	"transcript_id ""ENST00000463397.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000463397.2"" | genecode_v17"	chr2	 11724899	 11725176	+	ENSG00000239899.2	ENST00000463397.2	RN7SL674P	RN7SL674P-201	GREB1	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80chr2:11714899-11735176"	NA	inner
CUST_20948_PI429285431	0.9012609	A	1.4714289	A	0.673538351182842	0	lncRNA	22579-1_{1..696}	lnc-GDI2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GDI2-1:1	chr10	  5785810	  5786505	-	lnc-GDI2-1	lnc-GDI2-1:1	ENSG00000226647.1	RP11-336A10.2	C10orf18	NA	chr10:5775810-5796030	inner
CUST_50976_PI429285431	4.8759594	P	4.6648083	P	1.15761145254304	0	lncRNA	54618-1_{1..240}	hg19_lincRNAsTranscripts_TCONS_l2_00005843 range=chr12:97205524-97211695 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005843 range=chr12:97205524-97211695 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 97205524	 97205763	+	NA	NA	NA	NA	C12orf63	NA	chr12:97195524-97216602	inter
CUST_37425_PI429285431	7.6645865	P	8.065175	P	0.757549202934002	0	lncRNA	38530-4_{9001..10463}	n345879|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1428|NULL|-1.2825800|-0.2416485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345879|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1428|NULL|-1.2825800|-0.2416485	chr11	  3411167	  3412629	+	NA	NA	NA	NA	ZNF195	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00chr11:3392167-3400452"	NA	inter
CUST_25240_PI429285431	2.689852	A	2.676254	A	1.00946997447464	0	lncRNA	26770-1_{1..568}	lnc-MFN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MFN1-1:1	chr3	179116245	179116812	+	lnc-MFN1-1	lnc-MFN1-1:1	ENSG00000242539.1	AC007620.3	GNB4	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10chr3:179113876-179126506"	NA	inner
CUST_51316_PI429285431	3.1260867	P	2.8119078	A	1.24330383403188	0	lncRNA	54921-1_{1..376}	hg19_lincRNAsTranscripts_TCONS_l2_00008611 range=chr15:42953075-42955018 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008611 range=chr15:42953075-42955018 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 42953075	 42953450	+	NA	NA	NA	NA	STARD9	NA	chr15:42943075-42965018	inner
CUST_45971_PI429285431	4.4983974	P	3.0340393	A	2.75940668756114	0	lncRNA	50263-2_{3001..3266}	"gi|223468605|ref|NR_026788.1| Homo sapiens family with sequence similarity 66, member C (FAM66C), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223468605|ref|NR_026788.1| Homo sapiens family with sequence similarity 66, member C (FAM66C), non-coding RNA"	Chr12	  8335805	  8336070	+	440078	NR_026788.1	NA	NA	NA	NA	NA	inter
CUST_22901_PI429285431	0.9113731	A	2.485008	A	0.335960866629752	0	lncRNA	24478-1_{1..432}	lnc-TEX11-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TEX11-1:2	chrX	 69675594	 69676025	-	lnc-TEX11-1	lnc-TEX11-1:2	ENSG00000231651.1	DLG3-AS1	DLG3	NA	chrX:69665594-69685676	inner
LNCA_21_P0001970	0.9660772	A	0.9805014	A	0.990051721219758	0	lncRNA	ENST00000452813	NA	NA	NA	NA	XLOC_001864	NA	ENST00000452813	NA	NA	"BROAD Institute lincRNA (XLOC_001864), lincRNA [TCONS_00003110]"	chr2:218200777-218200836	hs|2q35	Agilent_HUMAN_G3V2	ENST00000452813	ENST00000452813	chr2	218200777	218200836	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36879_PI429285431	7.2113557	P	7.2635713	P	0.964454043359631	0	lncRNA	38037-1_{1..569}	n345347|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_896|NULL|-1.4361300|-0.1267162	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345347|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_896|NULL|-1.4361300|-0.1267162	chr17	 46662875	 46663443	+	NA	NA	NA	NA	HOXB6	NA	chr17:46673099-46673444	inter
CUST_50695_PI429285431	2.470038	A	2.269575	A	1.14906706264109	0	lncRNA	54366-1_{1..666}	hg19_lincRNAsTranscripts_TCONS_l2_00003561 range=chr10:49291426-49294910 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003561 range=chr10:49291426-49294910 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 49291426	 49292091	-	NA	NA	NA	NA	FRMPD2	NA	chr10:49281426-49304910	inter
CUST_29240_PI429285431	8.212721	P	8.629876	P	0.748900002711267	0	lncRNA	30991-1_{1..204}	n328264|AM055743|snoRNA|Homosapiens|U19-2smallnucleolarRNA|GENEBANK|NULL|NULL|-1.1046600|-0.1239125	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n328264|AM055743|snoRNA|Homosapiens|U19-2smallnucleolarRNA|GENEBANK|NULL|NULL|-1.1046600|-0.1239125	chr5	172447728	172447931	+	NA	NA	NA	NA	ATP6V0E1	NA	chr5:172437728-172457932	inner
CUST_2189_PI429285431	1.069134	A	1.0199692	A	1.03466576531712	0	lncRNA	2181-1_{1..525}	"transcript_id ""ENST00000506293.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506293.1"" | genecode_v17"	chr5	 71869947	 71870471	-	ENSG00000248371.1	ENST00000506293.1	CTC-347C20.2	CTC-347C20.2-003	LOC389300	NA	chr5:71869991-71880655	inter
CUST_17835_PI429285431	0.93931293	A	0.9752021	A	0.975430392677326	0	lncRNA	19570-1_{1..431}	lnc-RBMX-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RBMX-3:1	chrX	136018061	136018491	-	lnc-RBMX-3	lnc-RBMX-3:1	XLOC_008245	linc-RBMX-2	NA	NA	NA	inter
CUST_49522_PI429285431	8.398917	P	7.9794903	P	1.33739599304703	0	lncRNA	53314-1_{1..1234}	hg19_lincRNAsTranscripts_TCONS_l2_00024184 range=chr6:34187155-34188704 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024184 range=chr6:34187155-34188704 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 34187155	 34188388	+	NA	NA	NA	NA	HMGA1	"hg19_refFlat_RORA:range=chr15:60789654-609195735'pad=0,hg19_refFlat_RORA:range=chr15:60789654-609195735'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90chr6:34177155-34198704"	NA	inter
LNCA_21_P0006246	8.887395	P	9.002268	P	0.923463599367597	0	lncRNA	TCONS_00016238	NA	NA	NA	NA	XLOC_007621	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007621), lincRNA [TCONS_00016238]"	chr9:141142545-141142604	hs|9q34.3	Agilent_HUMAN_G3V2	TCONS_00016238	TCONS_00016238	chr9	141142545	141142604	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28743_PI429285431	1.0924528	A	0.9543745	A	1.10043833230189	0	lncRNA	30445-1_{1..774}	n326139|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096169|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096169|-0.8919050|-0.3121488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326139|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096169|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096169|-0.8919050|-0.3121488	chr1	241326798	241327571	-	NA	NA	NA	NA	RGS7	NA	chr1:241316798-241341658	inner
CUST_35502_PI429285431	3.9248207	P	3.6669161	P	1.19574072432243	0	lncRNA	36911-1_{1..592}	n342607|AF086388|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5108|NULL|-1.2963300|-0.3379414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342607|AF086388|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5108|NULL|-1.2963300|-0.3379414	chr10	 88964455	 88965046	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37346_PI429285431	2.589108	A	2.7331944	A	0.904952265554413	0	lncRNA	38450-1_{1..1098}	n345789|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1338|NULL|-1.4764200|-0.2505085	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345789|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1338|NULL|-1.4764200|-0.2505085	chr17	 32484928	 32486025	+	NA	NA	NA	NA	ACCN1	NA	chr17:32474928-32483825	inter
CUST_1969_PI429285431	0.92037165	A	0.95548475	A	0.97595524781808	0	lncRNA	1961-2_{3001..4365}	"transcript_id ""ENST00000508313.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000508313.1"" | genecode_v17"	chr4	170841912	170843276	-	ENSG00000248319.1	ENST00000508313.1	RP11-205M3.3	RP11-205M3.3-001	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20"	NA	inter
CUST_23443_PI429285431	3.7732265	P	4.19778	P	0.745069287536926	0	lncRNA	25010-2_{3001..4934}	lnc-PARN-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PARN-7:2	chr16	 14027534	 14029467	-	lnc-PARN-7	lnc-PARN-7:2	ENSG00000262732.1	CTD-2135D7.2	ERCC4	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ERCC4:range=chr16:14014023-140422045'pad=0,hg19_refFlat_ERCC4:range=chr16:14014023-140422045'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60chr16:14014534-14039467"	NA	inner
CUST_3090_PI429285431	0.95909804	A	0.9948711	A	0.975508899761187	0	lncRNA	3069-1_{1..494}	"transcript_id ""ENST00000518428.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518428.1"" | genecode_v17"	chr8	 40757535	 40758028	-	ENSG00000254383.1	ENST00000518428.1	RP11-465K16.1	RP11-465K16.1-001	ZMAT4	NA	chr8:40747535-40755343	inter
CUST_39640_PI429285431	0.9062387	A	0.9076531	A	0.999020093050503	0	lncRNA	40579-1_{1..757}	n405216|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000140107||-1.4743600|-0.1955566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405216|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000140107||-1.4743600|-0.1955566	chr7	 27245386	 27246142	-	NA	NA	NA	NA	HOXA13	NA	chr7:27236499-27239725	inter
CUST_42273_PI429285431	0.9249583	A	0.9357095	A	0.992575534558903	0	lncRNA	44883-1_{1..66}	ENST00000516693 ncrna:snoRNA chromosome:GRCh37:2:33216326:33216391:-1 gene:ENSG00000252502 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516693 ncrna:snoRNA chromosome:GRCh37:2:33216326:33216391:-1 gene:ENSG00000252502 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 33216326	 33216391	-	ENSG00000252502	ENST00000516693	NA	NA	LTBP1	NA	chr2:33206326-33226391	inner
CUST_36316_PI429285431	0.91371155	A	0.9356367	A	0.984917541127329	0	lncRNA	37548-1_{1..553}	n344843|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_392|NULL|-1.3297300|-0.4734363	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344843|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_392|NULL|-1.3297300|-0.4734363	chr5	106300100	106300652	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24711_PI429285431	1.3968984	A	2.3369732	A	0.521205856546735	0	lncRNA	26257-1_{1..486}	lnc-BAG2-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BAG2-2:6	chr6	 57398132	 57398617	+	lnc-BAG2-2	lnc-BAG2-2:6	ENSG00000146143.12	PRIM2	PRIM2	NA	chr6:57388132-57408317	inner
CUST_10600_PI429285431	4.375006	P	4.5435	P	0.889771010404682	0	lncRNA	12128-2_{3001..4116}	lnc-MBP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBP-2:1	chr18	 74520679	 74521794	-	lnc-MBP-2	lnc-MBP-2:1	XLOC_012894	linc-ZNF516-3	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.71;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.82;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
CUST_10298_PI429285431	0.9532859	A	1.391061	A	0.738272282252212	0	lncRNA	11825-1_{1..701}	lnc-DLL1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLL1-5:1	chr6	170441507	170442207	-	lnc-DLL1-5	lnc-DLL1-5:1	XLOC_005943	linc-TCTE3-8	NA	NA	NA	inter
CUST_32950_PI429285431	2.0418258	A	2.3341386	A	0.816591921363146	0	lncRNA	34570-1_{1..1065}	n339625|AL080086|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2069|NULL|-0.4386800|-0.1238392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339625|AL080086|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2069|NULL|-0.4386800|-0.1238392	chr20	 31037557	 31038621	+	NA	NA	NA	NA	C20orf112	"hg19_refFlat_C20orf112:range=chr20:31035399-311726925'pad=0,hg19_refFlat_C20orf112:range=chr20:31035399-311726925'pad=0 3'pad=0 strand=- repeatMasking=none,-97.60;hg19_refFlat_C20orf112:range=chr20:31035399-310625125'pad=0,hg19_refFlat_C20orf112:range=chr20:31035399-310625125'pad=0 3'pad=0 strand=- repeatMasking=none,-97.60chr20:31030862-31051410"	NA	inner
CUST_40425_PI429285431	6.325326	P	7.090931	P	0.588206650044241	0	lncRNA	41208-3_{6001..6807}	n409293|NR_033579|lncRNA|Homosapiens||RefGeneNoncode|NR_033579||13.8952000|-0.1150642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409293|NR_033579|lncRNA|Homosapiens||RefGeneNoncode|NR_033579||13.8952000|-0.1150642	chr15	 82759446	 82760252	+	NA	NA	NA	NA	NA	"hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.00;hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.00;hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00;hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0,hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00"	NA	inter
CUST_9392_PI429285431	0.9163041	A	0.9095239	A	1.00471073731391	0	lncRNA	10896-1_{1..389}	lnc-SLMO1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLMO1-1:1	chr18	 12438889	 12439277	+	lnc-SLMO1-1	lnc-SLMO1-1:1	XLOC_012632	linc-PSMG2	SPIRE1	NA	chr18:12446511-12449075	inter
CUST_30026_PI429285431	0.9228945	A	0.9265768	A	0.99745087867877	0	lncRNA	31794-1_{1..1084}	n334487|U21915|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218664_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218664_05|-1.0691500|-0.3194917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334487|U21915|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218664_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218664_05|-1.0691500|-0.3194917	chr5	 69733321	 69734404	-	NA	NA	NA	NA	NA	"hg19_refFlat_GTF2H2C:range=chr5:68860960-688880255'pad=0,hg19_refFlat_GTF2H2C:range=chr5:68860960-688880255'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_GTF2H2:range=chr5:70331504-703585905'pad=0,hg19_refFlat_GTF2H2:range=chr5:70331504-703585905'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_GTF2H2D:range=chr5:68860960-688880255'pad=0,hg19_refFlat_GTF2H2D:range=chr5:68860960-688880255'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10"	NA	inter
CUST_26226_PI429285431	1.2367165	A	0.9588516	A	1.21239927960433	0	lncRNA	27733-1_{1..481}	lnc-TECRL-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TECRL-4:1	chr4	 63031232	 63031712	-	lnc-TECRL-4	lnc-TECRL-4:1	ENSG00000248692.1	RP11-84A1.3	NA	NA	NA	inter
CUST_6759_PI429285431	2.1987498	A	2.3710642	A	0.88741792522395	0	lncRNA	6707-1_{1..695}	"transcript_id ""ENST00000435315.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435315.1"" | genecode_v17"	chr21	 16134031	 16134725	+	ENSG00000226751.1	ENST00000435315.1	AF127936.5	AF127936.5-001	NA	NA	NA	inter
LNCA_21_P0011865	1.0010078	A	0.92893004	A	1.0512295679144	0	lncRNA	TCONS_l2_00014030	NA	NA	NA	NA	XLOC_l2_007595	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007595), lincRNA [TCONS_l2_00014030]"	chr2:151424544-151424603	hs|2q23.3	Agilent_HUMAN_G3V2	TCONS_l2_00014030	TCONS_l2_00014030	chr2	151424544	151424603	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014261	3.872451	P	4.019062	P	0.903370056826754	0	lncRNA	XR_109038	XR_109038	XR_109038	NA	NA	LOC100507128	uncharacterized LOC100507128	NA	THC2643198	NA	"PREDICTED: Homo sapiens hypothetical LOC100507128 (LOC100507128), miscRNA [XR_109038]"	chr11:34181451-34181510	hs|11p13	Agilent_HUMAN_G3V2	XR_109038	XR_109038	chr11	 34181451	 34181510	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27611_PI429285431	0.9268586	A	0.917104	A	1.00678428317776	0	lncRNA	29187-1_{1..666}	n324812|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000140453|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000140453|-1.0248400|-0.2422119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324812|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000140453|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000140453|-1.0248400|-0.2422119	chr21	 33776675	 33777340	-	NA	NA	NA	NA	C21orf63	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90chr21:33784752-33788435"	NA	inter
CUST_49747_PI429285431	2.9608846	P	0.9742559	A	3.96309815686366	0	lncRNA	53516-1_{1..2271}	hg19_lincRNAsTranscripts_TCONS_l2_00026542 range=chr7:45763436-45808600 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026542 range=chr7:45763436-45808600 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 45763436	 45765706	-	NA	NA	NA	NA	ADCY1	NA	chr7:45753436-45762715	inter
CUST_24744_PI429285431	3.5292685	P	3.5910144	M	0.958103952965085	0	lncRNA	26289-1_{1..694}	lnc-KIF23-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-KIF23-1:1	chr15	 69684326	 69685019	+	lnc-KIF23-1	lnc-KIF23-1:1	ENSG00000259645.1	RP11-253M7.6	PAQR5	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50chr15:69674326-69694488"	NA	inner
CUST_39084_PI429285431	0.91853094	A	0.9128528	A	1.00394354211159	0	lncRNA	40060-1_{1..2431}	n385617|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aqt.1||2.0387300|-0.2178697	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n385617|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aqt.1||2.0387300|-0.2178697	chr9	 93224713	 93227143	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47719_PI429285431	1.1149698	A	0.90755415	A	1.15461802270404	0	lncRNA	51679-3_{6001..6594}	"gi|385137103|ref|NR_047641.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 71, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137103|ref|NR_047641.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 71, non-coding RNA"	ChrY	 15366259	 15366852	-	7404	NR_047641.1	NA	NA	NA	NA	NA	inter
CUST_2819_PI429285431	4.151963	P	3.9418871	P	1.1567490387222	0	lncRNA	2802-1_{1..542}	"transcript_id ""ENST00000443714.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443714.1"" | genecode_v17"	chr7	 45500311	 45500852	+	ENSG00000225537.1	ENST00000443714.1	AC073325.1	AC073325.1-001	NA	NA	NA	inter
CUST_26475_PI429285431	6.3307548	P	6.556249	P	0.85530198894497	0	lncRNA	27983-1_{1..595}	lnc-CALML5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALML5-1:1	chr10	  5567634	  5568228	-	lnc-CALML5-1	lnc-CALML5-1:1	ENSG00000256462.1	RP11-116G8.5	CALML3	"hg19_refFlat_CALML3:range=chr10:5567049-55674985'pad=0,hg19_refFlat_CALML3:range=chr10:5567049-55674985'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70chr10:5566924-5568225"	NA	inner
CUST_6855_PI429285431	4.88209	P	4.8684826	P	1.00947655178198	0	lncRNA	6804-1_{1..1133}	"transcript_id ""ENST00000457669.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457669.1"" | genecode_v17"	chr21	 38004979	 38006111	-	ENSG00000231324.1	ENST00000457669.1	AP000696.2	AP000696.2-001	NA	NA	NA	inter
CUST_6734_PI429285431	3.4462473	P	3.4007604	P	1.03203142428816	0	lncRNA	6682-1_{1..298}	"transcript_id ""ENST00000437350.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437350.1"" | genecode_v17"	chr20	 55171366	 55171663	+	ENSG00000225657.2	ENST00000437350.1	RP5-843L14.1	RP5-843L14.1-002	NA	NA	NA	inter
CUST_15097_PI429285431	5.289386	P	5.559935	P	0.829004018416075	0	lncRNA	16761-1_{1..203}	lnc-APOL3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APOL3-2:1	chr22	 36525860	 36526062	-	lnc-APOL3-2	lnc-APOL3-2:1	XLOC_014361	linc-RBFOX2-2	NA	NA	NA	inter
CUST_31685_PI429285431	6.2135534	P	6.424999	P	0.863671387141568	0	lncRNA	33432-1_{1..654}	n338211|BC031683|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|603|NULL|-0.9513690|-0.2015706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338211|BC031683|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|603|NULL|-0.9513690|-0.2015706	chr14	 21852450	 21853103	+	NA	NA	NA	NA	CHD8	NA	chr14:21853353-21863079	inter
CUST_9717_PI429285431	1.5200099	A	1.4550374	A	1.04606499998484	0	lncRNA	11233-1_{1..762}	lnc-NDUFS6-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDUFS6-5:4	chr5	  1959061	  1959822	+	lnc-NDUFS6-5	lnc-NDUFS6-5:4	XLOC_004250	linc-C5orf38-5	NA	NA	NA	inter
CUST_14531_PI429285431	0.9542267	A	1.1992533	A	0.84380023823828	0	lncRNA	16199-1_{1..1845}	lnc-PTPN23-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPN23-2:1	chr3	 47578358	 47580202	+	lnc-PTPN23-2	lnc-PTPN23-2:1	XLOC_002639	linc-DHX30	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40"	NA	inter
CUST_47435_PI429285431	0.90592414	A	0.8993958	A	1.00453535419239	0	lncRNA	51470-1_{1..3000}	"gi|345842381|ref|NR_002733.2| Homo sapiens DiGeorge syndrome critical region gene 5 (non-protein coding) (DGCR5), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|345842381|ref|NR_002733.2| Homo sapiens DiGeorge syndrome critical region gene 5 (non-protein coding) (DGCR5), transcript variant 1, non-coding RNA"	Chr22	 18958011	 18961010	+	26220	NR_002733.2	NA	NA	NA	NA	NA	inter
CUST_12500_PI429285431	2.0884593	A	0.98151505	A	2.15388951812149	0	lncRNA	14112-1_{1..332}	lnc-OLFML3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OLFML3-1:1	chr1	114804828	114805159	+	lnc-OLFML3-1	lnc-OLFML3-1:1	XLOC_000352	linc-SYCP1-4	NA	NA	NA	inter
CUST_38717_PI429285431	2.518626	A	2.8569844	A	0.790940788142766	0	lncRNA	39711-1_{1..1150}	n384190|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bho.3||0.0445858|-0.2546019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384190|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bho.3||0.0445858|-0.2546019	chr22	 46726771	 46727920	+	NA	NA	NA	NA	TRMU	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-32.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.10chr22:46731298-46740183"	NA	inter
CUST_50870_PI429285431	4.014989	P	4.766714	P	0.59389302744938	0	lncRNA	54514-1_{1..1955}	hg19_lincRNAsTranscripts_TCONS_l2_00004768 range=chr11:112161098-112164809 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004768 range=chr11:112161098-112164809 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	112161098	112163052	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34700_PI429285431	5.6547966	P	5.856152	P	0.869733072350566	0	lncRNA	36149-2_{3001..5340}	n341605|BX648371|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4076|NULL|0.1551040|-0.3775873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341605|BX648371|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4076|NULL|0.1551040|-0.3775873	chr8	126956372	126958711	-	NA	NA	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30"	NA	inter
CUST_22922_PI429285431	1.9371111	A	1.8949263	A	1.02967196937526	0	lncRNA	24498-1_{1..392}	lnc-GABPA-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GABPA-2:1	chr21	 27547928	 27548319	+	lnc-GABPA-2	lnc-GABPA-2:1	ENSG00000224541.1	AP001439.2	APP	NA	chr21:27537928-27543446	inter
CUST_40241_PI429285431	0.9085176	A	0.9089606	A	0.999692982938399	0	lncRNA	41059-1_{1..2345}	n408145|NR_028102|lncRNA|Homosapiens||RefGeneNoncode|NR_028102||8.5184500|-0.3387643	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408145|NR_028102|lncRNA|Homosapiens||RefGeneNoncode|NR_028102||8.5184500|-0.3387643	chr2	 39963199	 39965543	-	NA	NA	NA	NA	THUMPD2	NA	chr2:39963200-40006416	inter
CUST_20961_PI429285431	0.9243868	A	0.9255774	A	0.999175079401056	0	lncRNA	22592-1_{1..568}	lnc-NPY2R-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPY2R-1:1	chr4	156267449	156268016	+	lnc-NPY2R-1	lnc-NPY2R-1:1	ENSG00000250910.1	RP11-27G13.2	MAP9	NA	chr4:156263810-156277711	inner
CUST_14925_PI429285431	3.5731807	P	3.7487216	P	0.885435486459518	0	lncRNA	16587-1_{1..272}	lnc-PGPEP1L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PGPEP1L-1:2	chr15	 99640926	 99641197	-	lnc-PGPEP1L-1	lnc-PGPEP1L-1:2	XLOC_011607	linc-PGPEP1L	SYNM	NA	chr15:99645286-99651040	inter
CUST_2273_PI429285431	1.2089952	A	0.9192917	A	1.22238902875648	0	lncRNA	2265-1_{1..705}	"transcript_id ""ENST00000513288.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513288.1"" | genecode_v17"	chr5	 97217132	 97217836	+	ENSG00000248202.1	ENST00000513288.1	RP11-455B3.1	RP11-455B3.1-001	NA	NA	NA	inter
CUST_9954_PI429285431	5.272159	P	5.2585344	P	1.00948858696592	0	lncRNA	11478-1_{1..644}	lnc-FAAH2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAAH2-3:1	chrX	 57000998	 57001641	+	lnc-FAAH2-3	lnc-FAAH2-3:1	XLOC_007995	linc-FAAH2-3	SPIN3	NA	chrX:57002803-57011229	inter
CUST_20349_PI429285431	1.0960135	A	0.90666056	A	1.14025218914762	0	lncRNA	21991-1_{1..493}	lnc-CDS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDS1-1:1	chr4	 85731204	 85731696	+	lnc-CDS1-1	lnc-CDS1-1:1	ENSG00000251260.1	WDFY3-AS1	WDFY3	"hg19_refFlat_WDFY3:range=chr4:85594021-857817445'pad=0,hg19_refFlat_WDFY3:range=chr4:85594021-857817445'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50chr4:85721204-85741544"	NA	inner
CUST_9785_PI429285431	4.455764	P	5.0536823	P	0.660706617667836	0	lncRNA	11301-1_{1..383}	lnc-SYF2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYF2-1:4	chr1	 25593202	 25593584	-	lnc-SYF2-1	lnc-SYF2-1:4	XLOC_000746	linc-C1orf63	RHD	NA	chr1:25598981-25603294	inter
CUST_23163_PI429285431	3.0187354	P	3.083911	P	0.955828970217821	0	lncRNA	24734-1_{1..248}	lnc-NSUN6-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NSUN6-4:1	chr10	 18550095	 18550342	-	lnc-NSUN6-4	lnc-NSUN6-4:1	ENSG00000235020.1	RP11-109I13.2	CACNB2	NA	chr10:18540095-18560123	inner
CUST_25319_PI429285431	7.801119	P	7.9140644	P	0.924698273430742	0	lncRNA	26849-1_{1..461}	lnc-ZSCAN10-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZSCAN10-3:9	chr16	  3179462	  3179922	-	lnc-ZSCAN10-3	lnc-ZSCAN10-3:9	ENSG00000263072.1	RP11-473M20.14	ZNF213	NA	chr16:3185057-3189555	inter
CUST_50713_PI429285431	1.8416808	A	1.0869021	A	1.68737274044583	0	lncRNA	54382-3_{6001..6240}	hg19_lincRNAsTranscripts_TCONS_l2_00003131 range=chr10:82003045-82009394 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003131 range=chr10:82003045-82009394 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 82009045	 82009284	+	NA	NA	NA	NA	NA	"hg19_refFlat_EIF5A:range=chr17:7210366-72149595'pad=0,hg19_refFlat_EIF5A:range=chr17:7210366-72149595'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_EIF5AL1:range=chr10:81272406-812728705'pad=0,hg19_refFlat_EIF5AL1:range=chr10:81272406-812728705'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.90;hg19_refFlat_EIF5A:range=chr17:7212955-72149595'pad=0,hg19_refFlat_EIF5A:range=chr17:7212955-72149595'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10"	NA	inter
CUST_38416_PI429285431	2.0254629	A	1.9215279	A	1.07470075158798	0	lncRNA	39446-1_{1..1673}	n382486|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zgr.1||4.5377100|-0.3321993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n382486|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zgr.1||4.5377100|-0.3321993	chr15	 32814893	 32816565	-	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50"	NA	inter
CUST_11185_PI429285431	3.2148118	P	3.8643847	P	0.637469004066888	0	lncRNA	12742-1_{1..426}	lnc-FAM174A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM174A-1:3	chr5	 99755954	 99756379	+	lnc-FAM174A-1	lnc-FAM174A-1:3	XLOC_004490	linc-FAM174A-1	NA	NA	NA	inter
LNCA_21_P0014519	0.925489	A	0.9157722	A	1.00675790480515	0	lncRNA	XR_110189	XR_110189	XR_110189	NA	NA	LOC100507662	uncharacterized LOC100507662	NA	THC2656750	NA	"PREDICTED: Homo sapiens hypothetical LOC100507662 (LOC100507662), miscRNA [XR_110189]"	chr6:151408942-151408883	hs|6q25.1	Agilent_HUMAN_G3V2	XR_110189	XR_110189	chr6	151408883	151408942	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51471_PI429285431	2.4285583	A	2.2849228	A	1.10468534841381	0	lncRNA	55046-2_{3001..3807}	hg19_lincRNAsTranscripts_TCONS_l2_00010129 range=chr16:33496996-33509669 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010129 range=chr16:33496996-33509669 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 33499996	 33500802	-	NA	NA	NA	NA	NA	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_15502_PI429285431	0.92135525	A	0.9241057	A	0.998095349490468	0	lncRNA	17192-1_{1..2428}	lnc-SRL-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SRL-2:4	chr16	  4303648	  4306075	-	lnc-SRL-2	lnc-SRL-2:4	XLOC_011867	linc-SRL	TFAP4	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-31.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70chr16:4307187-4313751"	NA	inter
CUST_3346_PI429285431	5.7971582	P	4.40182	P	2.63050209669048	0	lncRNA	3321-4_{9001..9346}	"transcript_id ""ENST00000560295.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560295.1"" | genecode_v17"	chr8	141539255	141539600	-	ENSG00000259758.1	ENST00000560295.1	CTA-204B4.6	CTA-204B4.6-001	EIF2C2	NA	chr8:141541264-141549600	inter
CUST_13087_PI429285431	0.89930236	A	0.89615154	A	1.00218636862527	0	lncRNA	14714-1_{1..3000}	lnc-SLITRK5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK5-1:2	chr13	 88344720	 88347719	+	lnc-SLITRK5-1	lnc-SLITRK5-1:2	XLOC_010463	linc-GPC5-8	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30"	NA	inter
CUST_11518_PI429285431	5.4273868	P	5.96577	P	0.688542112476439	0	lncRNA	13088-1_{1..2827}	lnc-EIF2AK4-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2AK4-2:7	chr15	 40357422	 40360248	+	lnc-EIF2AK4-2	lnc-EIF2AK4-2:7	XLOC_011219	linc-BUB1B	NA	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.14;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.44;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60"	NA	inter
CUST_13467_PI429285431	0.91535056	A	0.9043218	A	1.00767384810069	0	lncRNA	15105-1_{1..593}	lnc-SBDS-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SBDS-8:1	chr7	 67998498	 67999090	-	lnc-SBDS-8	lnc-SBDS-8:1	XLOC_006488	linc-SBDS-1	NA	NA	NA	inter
CUST_47998_PI429285431	8.321591	P	7.774572	P	1.46106362032942	0	lncRNA	51884-1_{1..3000}	"gi|410173147|ref|XR_172131.1| PREDICTED: Homo sapiens putative NPIP-like protein LOC100132247-like (LOC101060576), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410173147|ref|XR_172131.1| PREDICTED: Homo sapiens putative NPIP-like protein LOC100132247-like (LOC101060576), misc_RNA"	NA	NA	NA	NA	NA	XR_172131.1	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80"	NA	Unknown
CUST_36216_PI429285431	0.91203636	A	1.0391834	A	0.915640359265883	0	lncRNA	37470-1_{1..2346}	n344760|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_309|NULL|-1.3579000|-0.1976638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344760|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_309|NULL|-1.3579000|-0.1976638	chrX	133677299	133679644	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40796_PI429285431	4.3967295	P	4.2904716	P	1.07643253352624	0	lncRNA	41504-1_{1..2698}	n410554|NR_037772|lncRNA|Homosapiens||RefGeneNoncode|NR_037772||0.6726720|-0.1993109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410554|NR_037772|lncRNA|Homosapiens||RefGeneNoncode|NR_037772||0.6726720|-0.1993109	chr17	   954314	   957011	-	NA	NA	NA	NA	ABR	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-53.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-24.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.14;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.81;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80chr17:944314-1090616"	NA	inner
CUST_50115_PI429285431	3.1046748	P	3.130046	P	0.98256775503635	0	lncRNA	53845-1_{1..776}	hg19_lincRNAsTranscripts_TCONS_l2_00028805 range=chr9:69065988-69106251 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028805 range=chr9:69065988-69106251 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69065988	 69066763	+	NA	NA	NA	NA	LOC100507370	NA	chr9:69065490-69089939	inter
CUST_40465_PI429285431	1.7678967	A	0.9928223	A	1.71127829996871	0	lncRNA	41235-2_{3001..6000}	n409391|NR_033781|lncRNA|Homosapiens||RefGeneNoncode|NR_033781||3.8519800|-0.2446254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409391|NR_033781|lncRNA|Homosapiens||RefGeneNoncode|NR_033781||3.8519800|-0.2446254	chr1	120109502	120112501	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33372_PI429285431	0.9245504	A	0.9207338	A	1.00264896786101	0	lncRNA	34951-1_{1..403}	n340089|AF086162|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2544|NULL|-0.6432140|-0.1920350	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340089|AF086162|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2544|NULL|-0.6432140|-0.1920350	chr10	 79998011	 79998413	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48354_PI429285431	2.5227792	A	2.1805127	A	1.26774668329413	0	lncRNA	52211-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00001299 range=chr1:79575425-79654137 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001299 range=chr1:79575425-79654137 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 79575425	 79578424	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70"	NA	inter
CUST_20460_PI429285431	8.188735	P	8.262274	P	0.950303995310661	0	lncRNA	22104-1_{1..881}	lnc-BTF3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BTF3-4:1	chr5	 72705884	 72706764	+	lnc-BTF3-4	lnc-BTF3-4:1	ENSG00000249149.1	RP11-79P5.8	NA	NA	NA	inter
CUST_17849_PI429285431	4.409768	P	5.1959205	P	0.579888526928035	0	lncRNA	19584-1_{1..481}	lnc-MTA3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTA3-3:1	chr2	 43358193	 43358673	+	lnc-MTA3-3	lnc-MTA3-3:1	XLOC_001448	linc-PLEKHH2-3	NA	NA	NA	inter
LNCA_21_P0009663	6.5017223	P	6.61761	P	0.92281432212029	0	lncRNA	TCONS_00026830	NA	NA	NA	NA	XLOC_013047	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013047), lincRNA [TCONS_00026830]"	chr19:35417612-35417671	hs|19q13.11	Agilent_HUMAN_G3V2	TCONS_00026830	TCONS_00026830	chr19	 35417612	 35417671	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35505_PI429285431	17.925999	P	17.562222	P	1.28679033040324	0	lncRNA	36914-1_{1..1924}	n342610|AK026741|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5111|NULL|-0.6729120|-0.1597577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342610|AK026741|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5111|NULL|-0.6729120|-0.1597577	chr10	102993300	102995223	+	NA	NA	NA	NA	LBX1	NA	chr10:102986733-102988717	inter
CUST_51477_PI429285431	12.2479	P	12.571735	P	0.798943285796311	0	lncRNA	55052-1_{1..1095}	hg19_lincRNAsTranscripts_TCONS_l2_00010135 range=chr16:33790306-33794149 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010135 range=chr16:33790306-33794149 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 33790306	 33791400	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30532_PI429285431	10.588429	P	10.757607	P	0.889349258680731	0	lncRNA	32312-1_{1..839}	n335699|CR620031|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000299226|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000299226|0.9173680|-0.0622135	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335699|CR620031|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000299226|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000299226|0.9173680|-0.0622135	chr19	 19230426	 19231264	-	NA	NA	NA	NA	SLC25A42	NA	chr19:19220426-19223704	inner
CUST_408_PI429285431	7.3566813	P	7.481079	P	0.917386956312309	0	lncRNA	400-1_{1..300}	"transcript_id ""ENST00000329536.8"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000329536.8"" | genecode_v17"	chr1	143465380	143465679	-	ENSG00000185044.9	ENST00000329536.8	RP11-435B5.4	RP11-435B5.4-006	NA	NA	NA	inter
CUST_16577_PI429285431	6.0576544	P	6.0805345	P	0.984265819339938	0	lncRNA	18278-1_{1..559}	lnc-C5orf43-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf43-2:2	chr5	 60618169	 60618727	-	lnc-C5orf43-2	lnc-C5orf43-2:2	XLOC_004841	linc-C5orf43-4	ZSWIM6	NA	chr5:60628100-60628438	inter
CUST_21392_PI429285431	3.1329608	P	3.6416087	P	0.702880872254892	0	lncRNA	23014-1_{1..498}	lnc-PMM2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PMM2-3:1	chr16	  8963470	  8963967	+	lnc-PMM2-3	lnc-PMM2-3:1	ENSG00000261481.1	RP11-77H9.6	CARHSP1	NA	chr16:8953470-8962863	inter
CUST_38371_PI429285431	0.9263261	A	0.91788745	A	1.00586636658283	0	lncRNA	39412-1_{1..1165}	n382182|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001xqp.1||-0.8873860|-0.3218540	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382182|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001xqp.1||-0.8873860|-0.3218540	chr14	 75319735	 75320899	-	NA	NA	NA	NA	PROX2	NA	chr14:75321835-75330537	inner
CUST_36936_PI429285431	3.377064	P	3.0121894	A	1.28776969085813	0	lncRNA	38090-1_{1..967}	n345406|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_955|NULL|-1.3794000|-0.2724416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345406|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_955|NULL|-1.3794000|-0.2724416	chr22	 39153560	 39154526	-	NA	NA	NA	NA	SUN2	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30chr22:39143560-39152024"	NA	inter
CUST_16473_PI429285431	3.0815578	A	3.1687062	A	0.941381626183377	0	lncRNA	18171-1_{1..329}	lnc-TBC1D19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBC1D19-1:1	chr4	 26766218	 26766546	+	lnc-TBC1D19-1	lnc-TBC1D19-1:1	XLOC_003480	linc-STIM2-4	TBC1D19	NA	chr4:26756218-26756917	inter
CUST_42120_PI429285431	1.5290258	A	0.9167581	A	1.5286601457483	0	lncRNA	44097-1_{1..110}	ENST00000385130 ncrna:miRNA chromosome:GRCh37:1:9211727:9211836:-1 gene:ENSG00000207865 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385130 ncrna:miRNA chromosome:GRCh37:1:9211727:9211836:-1 gene:ENSG00000207865 gene_biotype:miRNA transcript_biotype:miRNA	chr1	  9211727	  9211836	-	ENSG00000207865	ENST00000385130	NA	NA	NA	NA	NA	inter
CUST_49408_PI429285431	4.077384	P	4.741226	P	0.631195139029608	0	lncRNA	53215-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00023255 range=chr5:175570064-175595356 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023255 range=chr5:175570064-175595356 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175570064	175573063	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21059_PI429285431	4.3551393	P	4.8375278	P	0.715791590788528	0	lncRNA	22686-1_{1..483}	lnc-NUBP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUBP1-1:1	chr16	 10786475	 10786957	+	lnc-NUBP1-1	lnc-NUBP1-1:1	ENSG00000263279.1	RP11-109M19.1	TEKT5	NA	chr16:10776475-10788802	inner
CUST_26009_PI429285431	1.8976984	A	1.6828043	A	1.16061871686811	0	lncRNA	27528-1_{1..599}	lnc-RP11-293M10.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-293M10.1.1-1:2	chr14	 75894173	 75894771	-	lnc-RP11-293M10.1.1-1	lnc-RP11-293M10.1.1-1:2	ENSG00000259319.1	RP11-293M10.6	JDP2	NA	chr14:75894509-75904393	inter
CUST_38449_PI429285431	0.9033158	A	1.4008433	A	0.708319664343004	0	lncRNA	39470-3_{6001..7309}	n382698|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bkm.2||7.2242100|-0.3041773	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382698|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bkm.2||7.2242100|-0.3041773	chr15	 85053737	 85055045	-	NA	NA	NA	NA	NA	"hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.50"	NA	inter
CUST_10315_PI429285431	1.0965979	A	1.2255715	A	0.91448182352793	0	lncRNA	11843-1_{1..263}	lnc-USP12-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP12-5:1	chr13	 27824768	 27825030	-	lnc-USP12-5	lnc-USP12-5:1	XLOC_010544	linc-USP12-5	RPL21	NA	chr13:27825692-27830705	inter
CUST_9561_PI429285431	0.9092099	A	1.0104681	A	0.93221963159754	0	lncRNA	11076-1_{1..381}	lnc-USP31-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP31-3:1	chr16	 22824308	 22824688	-	lnc-USP31-3	lnc-USP31-3:1	XLOC_011899	linc-CDR2-2	HS3ST2	NA	chr16:22825860-22834620	inter
CUST_1847_PI429285431	5.878051	P	6.0228047	P	0.904533788333653	0	lncRNA	1837-1_{1..406}	"transcript_id ""ENST00000491608.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000491608.2"" | genecode_v17"	chr4	117410520	117410925	-	ENSG00000250791.1	ENST00000491608.2	RP11-55L3.1	RP11-55L3.1-001	NA	NA	NA	inter
CUST_24626_PI429285431	0.923276	A	0.9151698	A	1.00563460468028	0	lncRNA	26175-1_{1..2632}	lnc-CLIC6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CLIC6-2:1	chr21	 36154878	 36157509	+	lnc-CLIC6-2	lnc-CLIC6-2:1	ENSG00000234380.1	AP000330.8	RUNX1	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-10.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-22.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80chr21:36160098-36167183"	NA	inter
CUST_15366_PI429285431	4.072847	P	3.7272642	P	1.27066418422629	0	lncRNA	17049-1_{1..1535}	lnc-ELF5-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELF5-3:1	chr11	 34880399	 34881933	-	lnc-ELF5-3	lnc-ELF5-3:1	XLOC_009414	linc-ELF5	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70"	NA	inter
CUST_2194_PI429285431	2.1540194	A	2.2312005	A	0.947907967763934	0	lncRNA	2186-1_{1..790}	"transcript_id ""ENST00000515556.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515556.1"" | genecode_v17"	chr5	 72509774	 72510563	+	ENSG00000249743.1	ENST00000515556.1	RP11-60A8.1	RP11-60A8.1-005	NA	NA	NA	inter
CUST_33711_PI429285431	0.95622706	A	0.92380446	A	1.02272806833205	0	lncRNA	35271-1_{1..2697}	n340489|D83597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2950|NULL|4.6501800|-0.2909520	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340489|D83597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2950|NULL|4.6501800|-0.2909520	chr5	 66478115	 66480811	-	NA	NA	NA	NA	CD180	NA	chr5:66478103-66492617	inner
CUST_9552_PI429285431	0.9528455	A	0.9953379	A	0.970976039351589	0	lncRNA	11067-1_{1..607}	lnc-UBLCP1-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBLCP1-8:1	chr5	159012748	159013354	+	lnc-UBLCP1-8	lnc-UBLCP1-8:1	XLOC_004621	linc-ADRA1B-1	NA	NA	NA	inter
CUST_12315_PI429285431	4.7291126	P	4.855676	P	0.916010855063627	0	lncRNA	13928-1_{1..474}	lnc-HTRA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HTRA3-1:1	chr4	  8323684	  8324157	+	lnc-HTRA3-1	lnc-HTRA3-1:1	XLOC_003444	linc-C4orf23-2	NA	NA	NA	inter
CUST_6239_PI429285431	3.8165402	P	3.8687408	P	0.964464071040774	0	lncRNA	6164-1_{1..852}	"transcript_id ""ENST00000579862.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579862.1"" | genecode_v17"	chr18	 63273326	 63274177	+	ENSG00000265217.1	ENST00000579862.1	RP11-775G23.1	RP11-775G23.1-001	NA	NA	NA	inter
CUST_37392_PI429285431	8.438615	P	8.392504	P	1.03247797059793	0	lncRNA	38496-1_{1..347}	n345844|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1393|NULL|-1.3667900|-0.2755656	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345844|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1393|NULL|-1.3667900|-0.2755656	chr10	105725371	105725717	-	NA	NA	NA	NA	SLK	NA	chr10:105727470-105735903	inter
CUST_23015_PI429285431	0.9112165	A	0.9144143	A	0.997785908670205	0	lncRNA	24587-1_{1..542}	lnc-RP11-625H11.1.1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-625H11.1.1-3:3	chr15	 63134999	 63135540	-	lnc-RP11-625H11.1.1-3	lnc-RP11-625H11.1.1-3:3	ENSG00000259370.1	RP11-1069G10.1	TLN2	NA	chr15:63124999-63136830	inner
CUST_9661_PI429285431	1.1297063	A	1.5186396	A	0.763694055968031	0	lncRNA	11178-1_{1..363}	lnc-PPIAL4G-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-PPIAL4G-10:1	chr1	142588067	142588429	-	lnc-PPIAL4G-10	lnc-PPIAL4G-10:1	XLOC_000993	linc-FCGR1B-8	NA	NA	NA	inter
CUST_35250_PI429285431	1.0069137	A	1.1004065	A	0.937250892865509	0	lncRNA	36651-1_{1..1702}	n342250|BC036308|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4740|NULL|1.1858100|-0.3471726	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342250|BC036308|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4740|NULL|1.1858100|-0.3471726	chr1	 33452675	 33454376	+	NA	NA	NA	NA	AK2	NA	chr1:33473541-33502512	inter
CUST_31407_PI429285431	5.684218	P	4.3438845	P	2.53209845177889	0	lncRNA	33180-2_{3001..3744}	n337872|AK125603|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|255|NULL|0.0369465|-0.2949808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337872|AK125603|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|255|NULL|0.0369465|-0.2949808	chr1	 38278248	 38278991	-	NA	NA	NA	NA	YRDC	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70chr1:38268614-38273865"	NA	inner
CUST_40879_PI429285431	5.0709157	P	4.632725	P	1.35490406115942	0	lncRNA	41571-1_{1..1027}	n410679|NR_037929|lncRNA|Homosapiens||RefGeneNoncode|NR_037929||3.3307100|-0.3385415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410679|NR_037929|lncRNA|Homosapiens||RefGeneNoncode|NR_037929||3.3307100|-0.3385415	chr20	 57603732	 57604758	-	NA	NA	NA	NA	ATP5E	NA	chr20:57603733-57607422	inter
CUST_35271_PI429285431	5.850483	P	6.0568	P	0.866747094282197	0	lncRNA	36672-1_{1..3000}	n342281|BX648062|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4773|NULL|-1.1191500|-0.3849293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342281|BX648062|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4773|NULL|-1.1191500|-0.3849293	chr1	 93847978	 93850977	+	NA	NA	NA	NA	FNBP1L	"hg19_refFlat_FBXW11:range=chr5:171295639-1714335065'pad=0,hg19_refFlat_FBXW11:range=chr5:171295639-1714335065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70chr1:93850044-93861186"	NA	inter
CUST_43020_PI429285431	0.92622215	A	1.5846479	A	0.633569262440797	0	lncRNA	46327-1_{1..133}	ENST00000391149 ncrna:snRNA chromosome:GRCh37:8:127683767:127683899:1 gene:ENSG00000212451 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391149 ncrna:snRNA chromosome:GRCh37:8:127683767:127683899:1 gene:ENSG00000212451 gene_biotype:snRNA transcript_biotype:snRNA	chr8	127683767	127683899	+	ENSG00000212451	ENST00000391149	NA	NA	NA	NA	NA	inter
CUST_14723_PI429285431	2.8471682	A	3.7074103	P	0.550860109832961	0	lncRNA	16387-1_{1..273}	lnc-LGALS3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LGALS3-1:1	chr14	 55661507	 55661779	+	lnc-LGALS3-1	lnc-LGALS3-1:1	XLOC_010837	linc-FBXO34	DLGAP5	NA	chr14:55651507-55658396	inter
LNCA_21_P0005469	1.305611	A	1.0199074	A	1.21900462528082	0	lncRNA	THC2731813	NA	NA	NA	NA	XLOC_006350	NA	NA	THC2731813	NA	"BROAD Institute lincRNA (XLOC_006350), lincRNA [TCONS_00013691]"	chr7:007590702-007590643	hs|7p21.3	Agilent_HUMAN_G3V2	THC2731813	THC2731813	chr7	  7590643	  7590702	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006352	1.6677408	A	2.6382706	A	0.510318624449108	0	lncRNA	TCONS_00016616	NA	NA	NA	NA	XLOC_007402	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007402), lincRNA [TCONS_00016616]"	chr9:76026609-76027058	hs|9q21.13	Agilent_HUMAN_G3V2	TCONS_00016616	TCONS_00016616	chr9	 76026609	 76027058	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40478_PI429285431	0.93652815	A	0.9260083	A	1.00731845430889	0	lncRNA	41245-1_{1..1986}	n409410|NR_033809|lncRNA|Homosapiens||RefGeneNoncode|NR_033809||7.2849500|-0.3102214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409410|NR_033809|lncRNA|Homosapiens||RefGeneNoncode|NR_033809||7.2849500|-0.3102214	chr7	 99245812	 99247797	-	NA	NA	NA	NA	CYP3A5	NA	chr7:99245813-99277621	inner
CUST_10175_PI429285431	1.2727993	A	1.5049961	A	0.851337567707913	0	lncRNA	11700-1_{1..392}	lnc-TIMM21-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TIMM21-5:1	chr18	 70548425	 70548816	+	lnc-TIMM21-5	lnc-TIMM21-5:1	XLOC_012713	linc-C18orf55-5	NA	NA	NA	inter
CUST_3446_PI429285431	7.712921	P	6.9800844	P	1.66190348492452	0	lncRNA	3417-1_{1..552}	"transcript_id ""ENST00000590667.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590667.1"" | genecode_v17"	chr9	 84888374	 84888925	+	ENSG00000228430.4	ENST00000590667.1	RP11-15B24.5	RP11-15B24.5-007	NA	NA	NA	inter
CUST_7343_PI429285431	5.4378643	P	5.621825	P	0.880282992747553	0	lncRNA	8935-1_{1..102}	"transcript_id ""ENST00000362552.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000362552.1"" | genecode_v17"	chrX	 53489150	 53489251	+	ENSG00000199422.1	ENST00000362552.1	VTRNA3-1P	VTRNA3-1P-201	NA	NA	NA	inter
CUST_24454_PI429285431	1.1924657	A	0.9239717	A	1.20454976617954	0	lncRNA	26007-1_{1..433}	lnc-C3orf38-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C3orf38-1:1	chr3	 88217504	 88217936	+	lnc-C3orf38-1	lnc-C3orf38-1:1	ENSG00000244150.1	RP11-373L8.2	NA	NA	NA	inter
CUST_11117_PI429285431	1.2352612	A	1.0464156	A	1.13985127708795	0	lncRNA	12675-1_{1..437}	lnc-NVL-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-NVL-1:2	chr1	224397943	224398379	-	lnc-NVL-1	lnc-NVL-1:2	XLOC_001225	linc-TP53BP2-3	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00"	NA	inter
CUST_33769_PI429285431	3.3016238	P	3.109135	A	1.14273335114473	0	lncRNA	35322-1_{1..1050}	n340550|BC054885|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3012|NULL|6.0381600|-0.4240575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340550|BC054885|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3012|NULL|6.0381600|-0.4240575	chr5	 93954391	 93955440	+	NA	NA	NA	NA	KIAA0825	NA	chr5:93944391-93954309	inner
CUST_42623_PI429285431	6.5747476	P	6.6456304	P	0.952055247325009	0	lncRNA	45488-1_{1..76}	ENST00000363345 ncrna:snoRNA chromosome:GRCh37:14:101405893:101405968:1 gene:ENSG00000200215 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363345 ncrna:snoRNA chromosome:GRCh37:14:101405893:101405968:1 gene:ENSG00000200215 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101405893	101405968	+	ENSG00000200215	ENST00000363345	NA	NA	NA	NA	NA	inter
CUST_1945_PI429285431	0.9190847	A	0.91549236	A	1.00249312301797	0	lncRNA	1938-1_{1..579}	"transcript_id ""ENST00000510416.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510416.1"" | genecode_v17"	chr4	152826084	152826662	-	ENSG00000249818.1	ENST00000510416.1	RP11-73G16.3	RP11-73G16.3-001	NA	NA	NA	inter
CUST_5640_PI429285431	0.9268315	A	0.92748904	A	0.999544331851174	0	lncRNA	5568-1_{1..536}	"transcript_id ""ENST00000566030.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566030.1"" | genecode_v17"	chr16	 80213026	 80213561	+	ENSG00000261376.1	ENST00000566030.1	RP11-525K10.2	RP11-525K10.2-001	NA	NA	NA	inter
CUST_27494_PI429285431	0.9555233	A	0.9224101	A	1.02321775260936	0	lncRNA	29067-1_{1..1558}	n324673|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129022|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129022|-0.2968270|-0.2757140	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324673|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129022|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129022|-0.2968270|-0.2757140	chr22	 31102650	 31104207	+	NA	NA	NA	NA	OSBP2	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30chr22:31092650-31120330"	NA	inner
CUST_38565_PI429285431	1.5151596	A	0.9080264	A	1.52322936872057	0	lncRNA	39576-1_{1..1390}	n383509|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ogs.1||-1.1467200|-0.3153009	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383509|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ogs.1||-1.1467200|-0.3153009	chr19	 38053291	 38054680	-	NA	NA	NA	NA	ZNF571	NA	chr19:38055155-38064681	inner
CUST_28730_PI429285431	0.9778491	A	0.89001864	A	1.06277077426565	0	lncRNA	30430-1_{1..298}	n326123|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046436|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046436|-1.1370900|-0.4463431	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326123|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046436|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046436|-1.1370900|-0.4463431	chr10	  2201333	  2201630	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6716_PI429285431	1.8711247	A	2.2254243	A	0.782249317580753	0	lncRNA	6664-1_{1..431}	"transcript_id ""ENST00000414598.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414598.1"" | genecode_v17"	chr20	 51068003	 51068433	-	ENSG00000225785.1	ENST00000414598.1	RP4-583K8.1	RP4-583K8.1-001	NA	NA	NA	inter
LNCA_21_P0003048	1.0020976	A	0.92976105	A	1.05141815392428	0	lncRNA	TCONS_00006283	NA	NA	NA	NA	XLOC_002886	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002886), lincRNA [TCONS_00006283]"	chr3:154973301-154973360	hs|3q25.2	Agilent_HUMAN_G3V2	TCONS_00006283	TCONS_00006283	chr3	154973301	154973360	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41436_PI429285431	8.926041	P	9.270603	P	0.787547038349998	0	lncRNA	42606-1_{1..85}	ENST00000580529 ncrna:miRNA chromosome:GRCh37:9:140063638:140063722:-1 gene:ENSG00000263697 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580529 ncrna:miRNA chromosome:GRCh37:9:140063638:140063722:-1 gene:ENSG00000263697 gene_biotype:miRNA transcript_biotype:miRNA	chr9	140063638	140063722	-	ENSG00000263697	ENST00000580529	NA	NA	GRIN1	NA	chr9:140053638-140063214	inter
CUST_17857_PI429285431	4.768721	P	5.3383937	P	0.67376962723781	0	lncRNA	19592-1_{1..1802}	lnc-RP11-82I10.1.1-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-82I10.1.1-6:3	chr15	 98646464	 98648265	-	lnc-RP11-82I10.1.1-6	lnc-RP11-82I10.1.1-6:3	XLOC_011604	linc-RGMA-3	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40"	NA	inter
CUST_14710_PI429285431	4.6156893	P	5.2888465	P	0.627132764435087	0	lncRNA	16374-1_{1..1645}	lnc-HOXC4-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOXC4-4:3	chr12	 54546432	 54548076	+	lnc-HOXC4-4	lnc-HOXC4-4:3	XLOC_009765	linc-HNRNPA1-3	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_5369_PI429285431	2.613278	A	2.5585313	A	1.03867672247275	0	lncRNA	5306-1_{1..628}	"transcript_id ""ENST00000558641.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000558641.1"" | genecode_v17"	chr15	101402048	101402675	+	ENSG00000259604.1	ENST00000558641.1	RP11-66B24.1	RP11-66B24.1-002	ALDH1A3	NA	chr15:101420009-101424195	inter
CUST_11820_PI429285431	1.0593895	A	0.9360987	A	1.08921654353951	0	lncRNA	13402-1_{1..360}	lnc-SLC15A4-13:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC15A4-13:1	chr12	127647263	127647622	-	lnc-SLC15A4-13	lnc-SLC15A4-13:1	XLOC_010249	linc-DHX37-10	NA	NA	NA	inter
CUST_41557_PI429285431	5.0181413	P	5.1396627	P	0.919217774429623	0	lncRNA	42857-1_{1..84}	ENST00000401360 ncrna:miRNA chromosome:GRCh37:14:101530832:101530915:1 gene:ENSG00000216179 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401360 ncrna:miRNA chromosome:GRCh37:14:101530832:101530915:1 gene:ENSG00000216179 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101530832	101530915	+	ENSG00000216179	ENST00000401360	NA	NA	NA	NA	NA	inter
CUST_44244_PI429285431	1.1975174	A	1.5552816	A	0.780373017120325	0	lncRNA	48890-4_{9001..9161}	"gi|242247281|ref|NR_027898.1| Homo sapiens collagen, type VI, alpha 4 pseudogene 2 (COL6A4P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|242247281|ref|NR_027898.1| Homo sapiens collagen, type VI, alpha 4 pseudogene 2 (COL6A4P2), non-coding RNA"	Chr3	129940663	129940823	+	646300	NR_027898.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70"	NA	inter
CUST_28194_PI429285431	0.9093243	A	0.9103003	A	0.999323717134184	0	lncRNA	29821-1_{1..812}	n325474|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322860|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322860|0.3079990|-0.2124650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325474|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322860|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322860|0.3079990|-0.2124650	chr2	  3985726	  3986537	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34984_PI429285431	0.9624435	A	0.9319635	A	1.02135188382923	0	lncRNA	36400-1_{1..1288}	n341909|AK129594|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4390|NULL|-0.8845600|-0.1311959	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341909|AK129594|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4390|NULL|-0.8845600|-0.1311959	chr12	 48276431	 48277718	+	NA	NA	NA	NA	VDR	NA	chr12:48266431-48298814	inner
CUST_33527_PI429285431	2.843525	A	2.18913	A	1.57395577000524	0	lncRNA	35095-1_{1..2187}	n340265|BC016638|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2726|NULL|11.1604000|-0.2871751	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340265|BC016638|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2726|NULL|11.1604000|-0.2871751	chr4	159727245	159729431	+	NA	NA	NA	NA	FNIP2	NA	chr4:159717245-159799738	inner
CUST_17288_PI429285431	2.1351042	A	2.0092113	A	1.09118286892787	0	lncRNA	19006-1_{1..479}	lnc-ADAMTS17-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAMTS17-1:4	chr15	100890127	100890605	-	lnc-ADAMTS17-1	lnc-ADAMTS17-1:4	XLOC_011609	linc-ADAMTS17	ADAMTS17	NA	chr15:100880127-100882183	inter
CUST_25374_PI429285431	0.9130044	A	1.068761	A	0.897661484178212	0	lncRNA	26905-1_{1..424}	lnc-RIIAD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RIIAD1-1:1	chr1	151738484	151738907	+	lnc-RIIAD1-1	lnc-RIIAD1-1:1	ENSG00000232937.1	RP11-98D18.2	MRPL9	NA	chr1:151732123-151736040	inner
CUST_21090_PI429285431	3.002957	A	3.1494665	A	0.903433615155934	0	lncRNA	22715-1_{1..563}	lnc-MTX1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTX1-1:2	chr1	155169963	155170525	+	lnc-MTX1-1	lnc-MTX1-1:2	ENSG00000231064.1	RP11-263K19.4	THBS3	"hg19_refFlat_THBS3:range=chr1:155165632-1551776675'pad=0,hg19_refFlat_THBS3:range=chr1:155165632-1551776675'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30chr1:155165379-155177690"	NA	inner
CUST_39742_PI429285431	4.6525507	P	4.807516	P	0.89815397520962	0	lncRNA	40667-1_{1..3000}	n405862|NR_003083|lncRNA|Homosapiens||RefGeneNoncode|NR_003083||7.1593700|-0.0750099	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405862|NR_003083|lncRNA|Homosapiens||RefGeneNoncode|NR_003083||7.1593700|-0.0750099	chr16	 32888796	 32891795	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16417_PI429285431	4.1624074	P	3.636798	P	1.43954151954408	0	lncRNA	18115-1_{1..345}	lnc-CD38-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD38-2:6	chr4	 16357243	 16357587	+	lnc-CD38-2	lnc-CD38-2:6	XLOC_003469	linc-CLRN2-3	NA	NA	NA	inter
LNCA_21_P0010399	10.021289	P	9.664837	P	1.28027346392575	0	lncRNA	TCONS_00029531	NA	NA	NA	NA	XLOC_014174	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014174), lincRNA [TCONS_00029531]"	chr22:23893653-23893712	hs|22q11.23	Agilent_HUMAN_G3V2	TCONS_00029531	TCONS_00029531	chr22	 23893653	 23893712	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5223_PI429285431	2.1526194	A	2.3172488	A	0.892157667756571	0	lncRNA	5164-1_{1..309}	"transcript_id ""ENST00000559029.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559029.1"" | genecode_v17"	chr15	 69845055	 69845363	+	ENSG00000245750.3	ENST00000559029.1	RP11-279F6.1	RP11-279F6.1-007	NA	NA	NA	inter
LNCA_21_P0007534	1.6809626	A	0.9229933	A	1.69110858822664	0	lncRNA	TCONS_00020355	NA	NA	NA	NA	XLOC_009685	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009685), lincRNA [TCONS_00020355]"	chr12:20164432-20164491	hs|12p12.2	Agilent_HUMAN_G3V2	TCONS_00020355	TCONS_00020355	chr12	 20164432	 20164491	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48864_PI429285431	2.140862	A	1.2163953	A	1.89798251274144	0	lncRNA	52701-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00019181 range=chr3:14390737-14398336 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019181 range=chr3:14390737-14398336 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 14390737	 14393736	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.33;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10"	NA	inter
CUST_35501_PI429285431	6.5604887	P	6.97816	P	0.74863204040333	0	lncRNA	36910-1_{1..2175}	n342605|BC007288|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5106|NULL|9.2371100|-0.1146777	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342605|BC007288|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5106|NULL|9.2371100|-0.1146777	chr10	 80828791	 80830965	+	NA	NA	NA	NA	ZMIZ1	NA	chr10:80828792-81068228	inner
CUST_33204_PI429285431	0.91581035	A	0.905615	A	1.00709190741537	0	lncRNA	34795-1_{1..1617}	n339900|BX641123|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2349|NULL|-1.2272800|-0.3888793	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n339900|BX641123|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2349|NULL|-1.2272800|-0.3888793	chr18	 59913042	 59914658	+	NA	NA	NA	NA	KIAA1468	NA	chr18:59903042-59924645	inner
CUST_46311_PI429285431	0.99462277	A	1.2587833	A	0.832683112312152	0	lncRNA	50542-1_{1..676}	"gi|335057494|ref|NR_038358.1| Homo sapiens long intergenic non-protein coding RNA 640 (LINC00640), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|335057494|ref|NR_038358.1| Homo sapiens long intergenic non-protein coding RNA 640 (LINC00640), non-coding RNA"	Chr14	 51800111	 51800786	+	283553	NR_038358.1	NA	NA	NA	NA	NA	inter
CUST_40264_PI429285431	8.015717	P	8.048909	P	0.977255700405711	0	lncRNA	41074-1_{1..734}	n408196|NR_028340|lncRNA|Homosapiens||RefGeneNoncode|NR_028340||2.0085700|-0.1281266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408196|NR_028340|lncRNA|Homosapiens||RefGeneNoncode|NR_028340||2.0085700|-0.1281266	chr18	 77905806	 77906539	+	NA	NA	NA	NA	PARD6G	NA	chr18:77915115-77946315	inner
LNCA_21_P0002596	4.196069	P	4.5304265	P	0.79313727932722	0	lncRNA	TCONS_00004804	NA	NA	NA	NA	XLOC_001496	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001496), lincRNA [TCONS_00004804]"	chr2:64501080-64501139	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00004804	TCONS_00004804	chr2	 64501080	 64501139	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6462_PI429285431	1.1222154	A	0.9129854	A	1.15607099715526	0	lncRNA	6404-1_{1..375}	"transcript_id ""ENST00000590117.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590117.1"" | genecode_v17"	chr19	 33668962	 33669336	+	ENSG00000267054.1	ENST00000590117.1	CTD-2540B15.10	CTD-2540B15.10-001	WDR88	NA	chr19:33658962-33666705	inter
CUST_5967_PI429285431	5.1920104	P	5.3901043	P	0.871701501673202	0	lncRNA	5896-1_{1..477}	"transcript_id ""ENST00000580776.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580776.1"" | genecode_v17"	chr17	 71830906	 71831382	-	ENSG00000265927.1	ENST00000580776.1	CTD-2532D12.5	CTD-2532D12.5-002	NA	NA	NA	inter
CUST_885_PI429285431	0.9724876	A	1.3416303	A	0.774242442117732	0	lncRNA	875-1_{1..545}	"transcript_id ""ENST00000429095.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429095.1"" | genecode_v17"	chr2	 58655473	 58656017	+	ENSG00000233723.3	ENST00000429095.1	AC007092.1	AC007092.1-002	NA	"hg19_refFlat_IK:range=chr5:140027494-1400419145'pad=0,hg19_refFlat_IK:range=chr5:140027494-1400419145'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70"	NA	inter
CUST_19230_PI429285431	2.887064	A	3.6306798	P	0.597240621807102	0	lncRNA	20900-1_{1..546}	lnc-MLL5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MLL5-1:1	chr7	104946699	104947244	+	lnc-MLL5-1	lnc-MLL5-1:1	ENSG00000242154.1	RP4-778K6.3	SRPK2	NA	chr7:104936699-104957089	inner
CUST_12640_PI429285431	6.9452615	P	9.310876	P	0.194034554273653	0	lncRNA	14257-1_{1..1389}	lnc-NOC2L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOC2L-1:1	chr1	   854715	   856103	-	lnc-NOC2L-1	lnc-NOC2L-1:1	XLOC_000670	linc-OR4F16-2	SAMD11	NA	chr1:861121-865072	inter
CUST_13521_PI429285431	0.90546167	A	1.3830076	A	0.718198263554498	0	lncRNA	15161-1_{1..1217}	lnc-TCFL5-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCFL5-3:1	chr20	 61407664	 61408880	-	lnc-TCFL5-3	lnc-TCFL5-3:1	XLOC_013837	linc-GATA5-1	NA	NA	NA	inter
CUST_46847_PI429285431	5.827695	P	5.995067	P	0.890463264380409	0	lncRNA	50982-2_{3001..6000}	"gi|302191659|ref|NR_036474.1| Homo sapiens G patch domain containing 8 (GPATCH8), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302191659|ref|NR_036474.1| Homo sapiens G patch domain containing 8 (GPATCH8), transcript variant 2, non-coding RNA"	Chr17	 42475645	 42478644	-	23131	NR_036474.1	NA	NA	NA	NA	NA	inter
CUST_5880_PI429285431	0.91998464	A	0.91794246	A	1.00141653364653	0	lncRNA	5810-1_{1..2927}	"transcript_id ""ENST00000580282.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580282.1"" | genecode_v17"	chr17	 45956838	 45959764	-	ENSG00000266821.1	ENST00000580282.1	RP11-6N17.2	RP11-6N17.2-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20"	NA	inter
CUST_960_PI429285431	3.126419	A	1.8826776	A	2.36811870544911	0	lncRNA	949-1_{1..784}	"transcript_id ""ENST00000598560.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598560.1"" | genecode_v17"	chr2	 98081774	 98082557	-	ENSG00000230606.5	ENST00000598560.1	AC159540.1	AC159540.1-011	NA	NA	NA	inter
CUST_325_PI429201921	1.0178099	A	0.9168514	A	1.0724857656691	0	lncRNA	216-3_{6001..7686}	TC0Y000290.hg.1	 TCONS_l2_00031013-XLOC_l2_015918 // Broad TUCP // linc-SRY-2 chrY:-:6126373-6131976 // chrY // 100 // 100 // 0 // --- // 0///TCONS_l2_00031012-XLOC_l2_015918 // Broad TUCP // linc-SRY-2 chrY:-:6124307-6131994 // chrY // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:6124307-6131994	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031012-XLOC_l2_015918	linc-SRY-2	chrY	  6124307	  6131994	-	NA	NA	NA	NA	LOC388630	NA	chr1:48273738-48295909	Unknown
CUST_44724_PI429285431	4.9381804	P	5.804903	P	0.548391228289527	0	lncRNA	49278-1_{1..565}	"gi|311771782|ref|NR_037172.1| Homo sapiens uncharacterized LOC100507547 (LOC100507547), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|311771782|ref|NR_037172.1| Homo sapiens uncharacterized LOC100507547 (LOC100507547), transcript variant 4, non-coding RNA"	Chr6	 32120579	 32121143	-	100507547	NR_037172.1	NA	NA	NA	NA	NA	inter
CUST_24699_PI429285431	6.3984027	P	7.009361	P	0.654761636654079	0	lncRNA	26245-1_{1..380}	lnc-STK3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-STK3-2:1	chr8	100025097	100025476	-	lnc-STK3-2	lnc-STK3-2:1	ENSG00000253948.1	RP11-410L14.2	VPS13B	NA	chr8:100025494-100035272	inter
CUST_46756_PI429285431	13.155347	P	12.849571	P	1.23608332558238	0	lncRNA	50906-1_{1..1391}	"gi|224548957|ref|NR_027162.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224548957|ref|NR_027162.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 6, non-coding RNA"	Chr17	 16342301	 16343691	+	125144	NR_027162.1	NA	NA	NA	NA	NA	inter
CUST_3805_PI429285431	0.9249574	A	0.9152704	A	1.00673710964411	0	lncRNA	3773-1_{1..480}	"transcript_id ""ENST00000421481.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421481.1"" | genecode_v17"	chr10	110470276	110470755	+	ENSG00000223381.1	ENST00000421481.1	RP11-655H13.2	RP11-655H13.2-001	NA	NA	NA	inter
CUST_36161_PI429285431	0.8935642	A	0.89563406	A	0.998566311092144	0	lncRNA	37434-1_{1..2286}	n344722|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_271|NULL|-1.6734400|-0.2853184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344722|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_271|NULL|-1.6734400|-0.2853184	chr10	118587735	118590020	-	NA	NA	NA	NA	ENO4	"hg19_refFlat_ENO4:range=chr10:118609078-1186411805'pad=0,hg19_refFlat_ENO4:range=chr10:118609078-1186411805'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80chr10:118609023-118619222"	NA	inner
CUST_27447_PI429285431	0.9182473	A	0.90704083	A	1.00779798018959	0	lncRNA	29016-1_{1..844}	n324622|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039618|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039618|-1.1518400|-0.4864670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324622|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039618|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039618|-1.1518400|-0.4864670	chr6	   169949	   170792	+	NA	NA	NA	NA	NA	"hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
CUST_32417_PI429285431	1.9765344	A	1.2153608	A	1.69486880177944	0	lncRNA	34093-1_{1..1776}	n339012|Y11918|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1441|NULL|-0.8155360|-0.1300714	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339012|Y11918|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1441|NULL|-0.8155360|-0.1300714	chr16	  1161224	  1162999	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50"	NA	inter
CUST_45300_PI429285431	7.103054	P	6.785609	P	1.24612172315927	0	lncRNA	49744-1_{1..932}	"gi|157388915|ref|NR_003920.1| Homo sapiens chromosome 4 open reading frame 27 pseudogene (LOC389705), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|157388915|ref|NR_003920.1| Homo sapiens chromosome 4 open reading frame 27 pseudogene (LOC389705), non-coding RNA"	Chr9	 14993325	 14994256	+	389705	NR_003920.1	NA	NA	NA	NA	NA	inter
CUST_1597_PI429285431	0.9325392	A	1.6313332	A	0.616087000469906	0	lncRNA	1583-1_{1..246}	"transcript_id ""ENST00000440726.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440726.1"" | genecode_v17"	chr3	187166633	187166878	+	ENSG00000228952.1	ENST00000440726.1	RP11-567G11.1	RP11-567G11.1-001	NA	NA	NA	inter
CUST_14520_PI429285431	0.90169156	A	0.9025408	A	0.999411524907808	0	lncRNA	16187-1_{1..386}	lnc-TMEM206-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM206-5:1	chr1	212458321	212458706	-	lnc-TMEM206-5	lnc-TMEM206-5:1	XLOC_001191	linc-INTS7	PPP2R5A	NA	chr1:212458879-212468414	inter
CUST_51031_PI429285431	0.90364265	A	0.9044024	A	0.999473520068791	0	lncRNA	54673-1_{1..1153}	hg19_lincRNAsTranscripts_TCONS_l2_00007056 range=chr13:19836295-19838056 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007056 range=chr13:19836295-19838056 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 19836295	 19837447	-	NA	NA	NA	NA	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80"	NA	inter
CUST_40576_PI429285431	12.630474	P	12.091332	P	1.45310806745477	0	lncRNA	41328-3_{6001..6295}	n410019|NR_036447|lncRNA|Homosapiens||RefGeneNoncode|NR_036447||14.5527000|-0.0789384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410019|NR_036447|lncRNA|Homosapiens||RefGeneNoncode|NR_036447||14.5527000|-0.0789384	chr16	 16417465	 16417759	+	NA	NA	NA	NA	LOC100288368	NA	chr16:16418988-16419785	inter
CUST_14076_PI429285431	0.90341413	A	0.89196795	A	1.0079654440803	0	lncRNA	15721-1_{1..561}	lnc-CCNK-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCNK-2:1	chr14	 99625577	 99626137	+	lnc-CCNK-2	lnc-CCNK-2:1	XLOC_010927	linc-CCNK-1	BCL11B	NA	chr14:99635624-99636006	inter
CUST_5592_PI429285431	1.1785781	A	1.1053427	A	1.05207342870318	0	lncRNA	5521-1_{1..1910}	"transcript_id ""ENST00000563151.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563151.1"" | genecode_v17"	chr16	 66583183	 66585092	+	ENSG00000261519.1	ENST00000563151.1	RP11-403P17.4	RP11-403P17.4-001	CKLF-CMTM1	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TK2:range=chr16:66545871-665839645'pad=0,hg19_refFlat_TK2:range=chr16:66545871-665839645'pad=0 3'pad=0 strand=- repeatMasking=none,-109.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90chr16:66586466-66595092"	NA	inter
CUST_11355_PI429285431	2.164925	A	1.4243077	A	1.67089062619535	0	lncRNA	12919-1_{1..254}	lnc-SORCS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SORCS1-1:1	chr10	107831892	107832145	-	lnc-SORCS1-1	lnc-SORCS1-1:1	XLOC_008942	linc-ITPRIP-4	NA	NA	NA	inter
CUST_5003_PI429285431	2.9874423	P	2.4746294	A	1.42682945129249	0	lncRNA	4946-1_{1..1721}	"transcript_id ""ENST00000398474.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000398474.3"" | genecode_v17"	chr14	101296942	101298662	+	ENSG00000214548.9	ENST00000398474.3	MEG3	MEG3-005	NA	NA	NA	inter
CUST_36404_PI429285431	0.9192485	A	0.95726883	A	0.973990543281352	0	lncRNA	37622-1_{1..1743}	n344921|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_470|NULL|-1.4493100|-0.3668737	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344921|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_470|NULL|-1.4493100|-0.3668737	chr6	106872035	106873777	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36246_PI429285431	4.950001	P	5.168853	P	0.859248897146707	0	lncRNA	37491-1_{1..946}	n344783|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_332|NULL|-1.4006300|-0.2849869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344783|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_332|NULL|-1.4006300|-0.2849869	chr9	110802712	110803657	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31368_PI429285431	2.1932127	A	2.111823	A	1.0580367213262	0	lncRNA	33148-1_{1..3000}	n337836|AK127862|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|219|NULL|-1.1084700|-0.3797048	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337836|AK127862|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|219|NULL|-1.1084700|-0.3797048	chrX	112285954	112288953	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5253_PI429285431	1.5549804	A	1.2618513	A	1.22529497288845	0	lncRNA	5193-1_{1..528}	"transcript_id ""ENST00000559225.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559225.1"" | genecode_v17"	chr15	 79484313	 79484840	-	ENSG00000259234.1	ENST00000559225.1	RP11-17L5.4	RP11-17L5.4-006	ANKRD34C	NA	chr15:79575146-79586213	inter
CUST_41751_PI429285431	4.5559607	P	4.602359	P	0.968350809522173	0	lncRNA	43297-1_{1..83}	ENST00000582190 ncrna:miRNA chromosome:GRCh37:17:1733135:1733217:-1 gene:ENSG00000265504 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582190 ncrna:miRNA chromosome:GRCh37:17:1733135:1733217:-1 gene:ENSG00000265504 gene_biotype:miRNA transcript_biotype:miRNA	chr17	  1733135	  1733217	-	ENSG00000265504	ENST00000582190	NA	NA	SMYD4	NA	chr17:1723135-1733175	inner
CUST_3653_PI429285431	0.9040688	A	0.9060086	A	0.99865633662423	0	lncRNA	3622-1_{1..380}	"transcript_id ""ENST00000439198.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439198.1"" | genecode_v17"	chr10	 35508822	 35509201	-	ENSG00000233200.1	ENST00000439198.1	RP11-324I22.2	RP11-324I22.2-001	CREM	NA	chr10:35498822-35501886	inter
CUST_23424_PI429285431	5.932806	P	6.334146	P	0.75715469823144	0	lncRNA	24992-1_{1..765}	lnc-STOML1-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STOML1-1:11	chr15	 74218581	 74219345	-	lnc-STOML1-1	lnc-STOML1-1:11	ENSG00000261801.1	RP11-941F15.1	LOXL1	NA	chr15:74218789-74228672	inter
LNCA_21_P0010258	5.6571474	P	5.2451468	P	1.33052959443227	0	lncRNA	TCONS_00029045	NA	NA	NA	NA	XLOC_013960	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013960), lincRNA [TCONS_00029045]"	chr21:44776256-44776315	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029045	TCONS_00029045	chr21	 44776256	 44776315	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40862_PI429285431	7.658565	P	7.928874	P	0.829141939119208	0	lncRNA	41561-1_{1..1119}	n410652|NR_037894|lncRNA|Homosapiens||RefGeneNoncode|NR_037894||1.6474700|-0.2293093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410652|NR_037894|lncRNA|Homosapiens||RefGeneNoncode|NR_037894||1.6474700|-0.2293093	chr1	247108848	247109966	-	NA	NA	NA	NA	ZNF670	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00chr1:247197940-247242115"	NA	inner
CUST_386_PI429201921	1.0864865	A	1.0328479	A	1.03787924570531	0	lncRNA	245-4_{9001..9394}	TC22001135.hg.1	TCONS_l2_00018274-XLOC_l2_009405 // Broad TUCP // linc-MPPED1-1 chr22:+:43796336-43805687 // chr22 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00017796-XLOC_l2_009405 // Broad TUCP // linc-MPPED1-1 chr22:+:43800847-43805731 // chr22 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr22:+:43796336-43805687	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00018274-XLOC_l2_009405	linc-MPPED1-1	chr22	 43796336	 43805687	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2860_PI429285431	2.96416	A	3.189682	A	0.855285507869253	0	lncRNA	2842-1_{1..699}	"transcript_id ""ENST00000450353.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450353.1"" | genecode_v17"	chr7	 65956083	 65956781	-	ENSG00000223473.1	ENST00000450353.1	GS1-124K5.3	GS1-124K5.3-001	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20"	NA	inter
CUST_30394_PI429285431	7.037257	P	6.907041	P	1.09445755095045	0	lncRNA	32174-1_{1..848}	n335512|BC062665|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000260556|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000260556|-1.1362000|-0.3602885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335512|BC062665|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000260556|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000260556|-1.1362000|-0.3602885	chr1	176432303	176433150	+	NA	NA	NA	NA	PAPPA2	NA	chr1:176432307-176535140	inner
CUST_32900_PI429285431	6.628551	P	5.363541	P	2.40328875732423	0	lncRNA	34525-2_{3001..3619}	n339568|AK123831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2010|NULL|-0.7868730|-0.2796029	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339568|AK123831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2010|NULL|-0.7868730|-0.2796029	chr20	  5177914	  5178532	+	NA	NA	NA	NA	CDS2	NA	chr20:5164914-5178533	inner
CUST_24412_PI429285431	4.8839264	P	3.5709832	P	2.48447874582724	0	lncRNA	25965-1_{1..1859}	lnc-CEMP1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEMP1-1:3	chr16	  2606219	  2608077	-	lnc-CEMP1-1	lnc-CEMP1-1:3	ENSG00000261613.1	RP11-20I23.8	PDPK1	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80chr16:2596219-2616539"	NA	inner
CUST_28454_PI429285431	0.92365545	A	0.90313345	A	1.01432641985638	0	lncRNA	30116-1_{1..374}	n325783|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044345|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044345|-1.0784100|-0.2878380	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325783|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044345|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044345|-1.0784100|-0.2878380	chr13	 29626202	 29626575	+	NA	NA	NA	NA	MTUS2	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70chr13:29616202-29636723"	NA	inner
CUST_41033_PI429285431	1.7721769	A	2.4810696	A	0.611789520531338	0	lncRNA	41692-1_{1..3000}	n411676|NR_040535|lncRNA|Homosapiens||RefGeneNoncode|NR_040535||0.0040703|-0.2305527	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411676|NR_040535|lncRNA|Homosapiens||RefGeneNoncode|NR_040535||0.0040703|-0.2305527	chr22	 39828164	 39831163	+	NA	NA	NA	NA	TAB1	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50chr22:39818164-39833132"	NA	inter
CUST_37550_PI429285431	5.3218393	P	5.9260435	P	0.657834145649372	0	lncRNA	38654-1_{1..3000}	n346026|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1576|NULL|-1.5743800|-0.2988533	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n346026|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1576|NULL|-1.5743800|-0.2988533	chr4	   770527	   773526	-	NA	NA	NA	NA	CPLX1	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.44;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90chr4:778745-785635"	NA	inter
CUST_11171_PI429285431	1.5402118	A	0.9542468	A	1.50104268155005	0	lncRNA	12728-1_{1..579}	lnc-TSEN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSEN2-1:1	chr3	 12516562	 12517140	+	lnc-TSEN2-1	lnc-TSEN2-1:1	XLOC_002577	linc-TSEN2	TSEN2	NA	chr3:12525931-12526738	inter
CUST_50387_PI429285431	0.9136909	A	0.9123602	A	1.00092279646808	0	lncRNA	54094-2_{3001..5981}	hg19_lincRNAsTranscripts_TCONS_l2_00030616 range=chrX:135892212-135930743 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030616 range=chrX:135892212-135930743 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	135895212	135898192	-	NA	NA	NA	NA	NA	"hg19_refFlat_RAB28:range=chr4:13371500-134857745'pad=0,hg19_refFlat_RAB28:range=chr4:13371500-134857745'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RAB28:range=chr4:13370182-134857745'pad=0,hg19_refFlat_RAB28:range=chr4:13370182-134857745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RAB28:range=chr4:13373450-134857745'pad=0,hg19_refFlat_RAB28:range=chr4:13373450-134857745'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00"	NA	inter
CUST_503_PI429285431	0.9083525	A	2.7033968	A	0.288162738117769	0	lncRNA	495-1_{1..740}	"transcript_id ""ENST00000367563.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000367563.3"" | genecode_v17"	chr1	182376756	182377495	+	ENSG00000203729.4	ENST00000367563.3	LINC00272	LINC00272-001	TEDDM1	NA	chr1:182367252-182369751	inter
CUST_30792_PI429285431	6.909012	P	7.3306	P	0.746602373403174	0	lncRNA	32579-1_{1..393}	n336680|Z69027|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327664|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327664|2.2460300|-0.0843842	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336680|Z69027|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327664|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327664|2.2460300|-0.0843842	chr2	 89160090	 89160482	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18456_PI429285431	1.3641837	A	2.1999326	A	0.560292117037771	0	lncRNA	20179-1_{1..463}	lnc-ETV6-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ETV6-1:3	chr12	 11743184	 11743646	+	lnc-ETV6-1	lnc-ETV6-1:3	ENSG00000247157	RP11-434C1.1	NA	NA	NA	inter
CUST_42269_PI429285431	7.8024893	P	7.744385	P	1.04109686132231	0	lncRNA	44878-1_{1..84}	ENST00000580093 ncrna:snoRNA chromosome:GRCh37:HSCHR6_MHC_QBL:29549960:29550043:1 gene:ENSG00000266132 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580093 ncrna:snoRNA chromosome:GRCh37:HSCHR6_MHC_QBL:29549960:29550043:1 gene:ENSG00000266132 gene_biotype:snoRNA transcript_biotype:snoRNA	chrHSCHR6_MHC_QBL	 29549960	 29550043	+	ENSG00000266132	ENST00000580093	NA	NA	NA	NA	NA	Unknown
CUST_11247_PI429285431	0.92377126	A	0.9342667	A	0.99275151327583	0	lncRNA	12805-1_{1..478}	lnc-RP11-201M22.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-201M22.1.1-1:2	chr11	 91545155	 91545632	+	lnc-RP11-201M22.1.1-1	lnc-RP11-201M22.1.1-1:2	XLOC_009248	linc-FAT3-3	NA	NA	NA	inter
LNCA_21_P0008185	1.5870662	A	2.5989697	A	0.495891533801324	0	lncRNA	TCONS_00022060	NA	NA	NA	NA	XLOC_010665	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010665), lincRNA [TCONS_00022060]"	chr13:79413745-79413686	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00022060	TCONS_00022060	chr13	 79413686	 79413745	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010607	3.0973582	P	1.9451827	A	2.2224878005739	0	lncRNA	TCONS_l2_00001147	NA	NA	NA	NA	XLOC_l2_000866	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000866), lincRNA [TCONS_l2_00001147]"	chr1:37568257-37568198	hs|1p34.3	Agilent_HUMAN_G3V2	TCONS_l2_00001147	TCONS_l2_00001147	chr1	 37568198	 37568257	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36850_PI429285431	2.1254416	A	2.0953677	A	1.02106442693958	0	lncRNA	38014-2_{3001..6000}	n345322|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_871|NULL|-1.4390300|-0.1893230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345322|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_871|NULL|-1.4390300|-0.1893230	chr16	 85201652	 85204651	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_9898_PI429285431	0.92987263	A	0.9296415	A	1.00016021994169	0	lncRNA	11422-1_{1..1382}	lnc-C7orf11-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C7orf11-5:1	chr7	 39662032	 39663413	-	lnc-C7orf11-5	lnc-C7orf11-5:1	XLOC_006415	linc-VPS41-4	RALA	NA	chr7:39663152-39672092	inter
CUST_48066_PI429285431	1.5750338	A	0.92217916	A	1.57227616024077	0	lncRNA	51942-1_{1..1116}	"gi|397138185|ref|XR_159397.1| PREDICTED: Homo sapiens uncharacterized LOC100996866 (LOC100996866), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138185|ref|XR_159397.1| PREDICTED: Homo sapiens uncharacterized LOC100996866 (LOC100996866), misc_RNA"	NA	NA	NA	NA	NA	XR_159397.1	NA	NA	NA	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20"	NA	Unknown
CUST_40322_PI429285431	0.9178799	A	1.7433586	A	0.564294932885118	0	lncRNA	41125-1_{1..648}	n408362|NR_029461_2|lncRNA|Homosapiens||RefGeneNoncode|NR_029461_2||-0.4722920|-0.3720819	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408362|NR_029461_2|lncRNA|Homosapiens||RefGeneNoncode|NR_029461_2||-0.4722920|-0.3720819	chr6	  2847595	  2848242	+	NA	NA	NA	NA	SERPINB1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60chr6:2837595-2842081"	NA	inter
CUST_29138_PI429285431	0.90296036	A	1.0999808	A	0.872350346285984	0	lncRNA	30879-1_{1..395}	n326646|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099440|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099440|-0.7357510|-0.3034216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326646|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099440|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099440|-0.7357510|-0.3034216	chr1	 32955921	 32956315	-	NA	NA	NA	NA	ZBTB8B	NA	chr1:32945921-32953460	inter
CUST_18534_PI429285431	7.9620185	P	8.672169	P	0.611256370080213	0	lncRNA	20247-2_{3001..6000}	lnc-CCNJ-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCNJ-1:2	chr10	 97923102	 97926101	+	lnc-CCNJ-1	lnc-CCNJ-1:2	ENSG00000177853	ZNF518A	ZNF518A	NA	chr10:97910102-97923517	inner
LNCA_21_P0012175	2.392868	A	2.5776894	A	0.879757979776279	0	lncRNA	TCONS_l2_00017027	NA	NA	NA	NA	XLOC_l2_009050	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009050), lincRNA [TCONS_l2_00017027]"	chr21:35697572-35697631	hs|21q22.11	Agilent_HUMAN_G3V2	TCONS_l2_00017027	TCONS_l2_00017027	chr21	 35697572	 35697631	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46500_PI429285431	9.789719	P	9.447847	P	1.26740006971348	0	lncRNA	50694-1_{1..2279}	"gi|187829212|ref|NR_023319.1| Homo sapiens ADP-dependent glucokinase (ADPGK), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|187829212|ref|NR_023319.1| Homo sapiens ADP-dependent glucokinase (ADPGK), transcript variant 3, non-coding RNA"	Chr15	 73043708	 73045986	-	83440	NR_023319.1	NA	NA	NA	NA	NA	inter
CUST_15550_PI429285431	0.90821564	A	0.9132766	A	0.996498155653957	0	lncRNA	17235-1_{1..1366}	lnc-DCC-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCC-1:5	chr18	 51108964	 51110329	+	lnc-DCC-1	lnc-DCC-1:5	XLOC_012679	linc-POLI-2	NA	NA	NA	inter
CUST_49361_PI429285431	5.00672	P	5.200964	P	0.874030784907446	0	lncRNA	53174-1_{1..1348}	hg19_lincRNAsTranscripts_TCONS_l2_00022448 range=chr5:98264797-98266517 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022448 range=chr5:98264797-98266517 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 98264797	 98266144	+	NA	NA	NA	NA	CHD1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-59.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70chr5:98254797-98262238"	NA	inter
CUST_38454_PI429285431	1.0794677	A	1.2559009	A	0.884888018156085	0	lncRNA	39474-1_{1..771}	n382757|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002btf.1||-1.2311400|-0.2951851	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n382757|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002btf.1||-1.2311400|-0.2951851	chr15	 94443929	 94444699	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23212_PI429285431	0.8979862	A	0.9024495	A	0.99691105682126	0	lncRNA	24784-1_{1..592}	lnc-FAM57A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM57A-2:1	chr17	   456417	   457008	+	lnc-FAM57A-2	lnc-FAM57A-2:1	ENSG00000262905.1	RP5-1029F21.2	VPS53	"hg19_refFlat_VPS53:range=chr17:436067-6179495'pad=0,hg19_refFlat_VPS53:range=chr17:436067-6179495'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_VPS53:range=chr17:422368-6179495'pad=0,hg19_refFlat_VPS53:range=chr17:422368-6179495'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10chr17:446417-466657"	NA	inner
CUST_11193_PI429285431	5.473441	P	5.7680707	P	0.815281565826214	0	lncRNA	12751-1_{1..254}	lnc-SYF2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYF2-1:2	chr1	 25594231	 25594484	-	lnc-SYF2-1	lnc-SYF2-1:2	XLOC_000746	linc-C1orf63	RHD	NA	chr1:25598981-25604374	inter
CUST_31650_PI429285431	3.645982	P	3.7278256	P	0.944849464893059	0	lncRNA	33401-1_{1..447}	n338172|AF086231|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|561|NULL|-1.0350900|-0.2690343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338172|AF086231|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|561|NULL|-1.0350900|-0.2690343	chr22	 46617920	 46618366	+	NA	NA	NA	NA	PPARA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr22:46607920-46628360"	NA	inner
CUST_23394_PI429285431	2.1983223	A	1.0166312	A	2.26842521816992	0	lncRNA	24962-1_{1..560}	lnc-GAPDH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GAPDH-1:1	chr12	  6653897	  6654456	+	lnc-GAPDH-1	lnc-GAPDH-1:1	ENSG00000245667.2	RP5-940J5.8	IFFO1	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80chr12:6648694-6664097"	NA	inter
CUST_40057_PI429285431	0.91463476	A	0.94301367	A	0.980521445624507	0	lncRNA	40908-1_{1..3000}	n407262|NR_026730|lncRNA|Homosapiens||RefGeneNoncode|NR_026730||1.5053100|-0.2751882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407262|NR_026730|lncRNA|Homosapiens||RefGeneNoncode|NR_026730||1.5053100|-0.2751882	chr13	 25502892	 25505891	-	NA	NA	NA	NA	CENPJ	"hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-22.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PARP4:range=chr13:24995257-250779145'pad=0,hg19_refFlat_PARP4:range=chr13:24995257-250779145'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40chr13:25492892-25497085"	NA	inter
LNCA_21_P0003616	1.0075643	A	1.2329738	A	0.855352204827767	0	lncRNA	TCONS_00008092	NA	NA	NA	NA	XLOC_003556	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003556), lincRNA [TCONS_00008092]"	chr4:63036133-63036192	hs|4q13.1	Agilent_HUMAN_G3V2	TCONS_00008092	TCONS_00008092	chr4	 63036133	 63036192	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2957_PI429285431	1.3388488	A	0.92542833	A	1.3318397181603	0	lncRNA	2938-1_{1..336}	"transcript_id ""ENST00000417810.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417810.1"" | genecode_v17"	chr7	156397826	156398161	-	ENSG00000241558.1	ENST00000417810.1	RP5-982E9.1	RP5-982E9.1-002	NA	NA	NA	inter
CUST_382_PI429201921	0.9410859	A	0.928484	A	1.00877323264017	0	lncRNA	244-4_{9001..9204}	TC08002162.hg.1	TCONS_l2_00028034-XLOC_l2_014388 // Broad TUCP // linc-ZNF517 chr8:+:145925736-145934941 // chr8 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00028035-XLOC_l2_014388 // Broad TUCP // linc-ZNF517 chr8:+:145926088-145934575 // chr8 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00028036-XLOC_l2_014388 // Broad TUCP // linc-ZNF517 chr8:+:145931394-145932554 // chr8 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr8:+:145925736-145934941	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00028034-XLOC_l2_014388	linc-ZNF517	chr8	145925736	145934941	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43264_PI429285431	1.0072503	A	0.97711074	A	1.02111089872609	0	lncRNA	48082-1_{1..2014}	ENST00000602575 havana:sense_intronic chromosome:GRCh37:8:10962201:10964214:-1 gene:ENSG00000269918 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602575 havana:sense_intronic chromosome:GRCh37:8:10962201:10964214:-1 gene:ENSG00000269918 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr8	 10962201	 10964214	-	ENSG00000269918	ENST00000602575	NA	NA	XKR6	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr8:10952201-10974214"	NA	inner
CUST_23425_PI429285431	5.497652	P	5.1234226	P	1.29614704675055	0	lncRNA	24993-1_{1..666}	lnc-AC108463.1-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC108463.1-3:8	chr2	112252462	112253127	-	lnc-AC108463.1-3	lnc-AC108463.1-3:8	ENSG00000172965.6	AC068491.1	NA	NA	NA	inter
CUST_31871_PI429285431	0.92606735	A	0.92651045	A	0.999692913644964	0	lncRNA	33603-1_{1..1124}	n338423|AF508903|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|820|NULL|-1.1036400|-0.3606846	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338423|AF508903|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|820|NULL|-1.1036400|-0.3606846	chr1	184970658	184971781	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3343206	9.412628	P	9.694188	P	0.822700941703101	0	lncRNA	XR_132538	XR_132538	XR_132538	100288292	Hs.520384	LOC100288292	putative uncharacterized protein FLJ44672-like	NA	THC2481823	NA	"PREDICTED: Homo sapiens putative uncharacterized protein FLJ44672-like (LOC100288292), miscRNA [XR_132538]"	chr7:63224532-63224591	hs|7q11.21	Agilent_HUMAN_G3V2	XR_132538	XR_132538	chr7	 63224532	 63224591	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21595_PI429285431	8.225936	P	8.590641	P	0.776627662362174	0	lncRNA	23208-1_{1..588}	lnc-SEC61A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC61A1-1:1	chr3	127797582	127798169	+	lnc-SEC61A1-1	lnc-SEC61A1-1:1	ENSG00000239608.1	RUVBL1-AS1	RUVBL1	NA	chr3:127799800-127807899	inter
CUST_45816_PI429285431	9.309016	P	8.645137	P	1.58433673667383	0	lncRNA	50151-1_{1..1965}	"gi|226371634|ref|NR_027391.1| Homo sapiens solute carrier family 15, member 3 (SLC15A3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226371634|ref|NR_027391.1| Homo sapiens solute carrier family 15, member 3 (SLC15A3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_027391.1	NA	NA	NA	NA	NA	Unknown
CUST_44530_PI429285431	1.7254304	A	0.97993934	A	1.67654482928308	0	lncRNA	49125-1_{1..1058}	"gi|397139091|ref|XR_158788.1| PREDICTED: Homo sapiens uncharacterized LOC100996444 (LOC100996444), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|397139091|ref|XR_158788.1| PREDICTED: Homo sapiens uncharacterized LOC100996444 (LOC100996444), misc_RNA"	NA	NA	NA	NA	NA	XR_158788.1	NA	NA	NA	NA	NA	Unknown
CUST_36278_PI429285431	7.02125	P	6.1372004	P	1.84554843435691	0	lncRNA	37514-1_{1..991}	n344808|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_357|NULL|-1.3673200|-0.3263486	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344808|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_357|NULL|-1.3673200|-0.3263486	chr13	 50656333	 50657323	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9782_PI429285431	0.91162133	A	0.913604	A	0.998626661772751	0	lncRNA	11299-2_{3001..6000}	lnc-CADM2-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CADM2-3:6	chr3	 84101594	 84104593	+	lnc-CADM2-3	lnc-CADM2-3:6	XLOC_002722	linc-CADM2-2	NA	NA	NA	inter
CUST_539_PI429285431	0.9122046	A	1.2035291	A	0.817151508983297	0	lncRNA	531-1_{1..507}	"transcript_id ""ENST00000427825.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427825.1"" | genecode_v17"	chr1	200443048	200443554	+	ENSG00000230623.2	ENST00000427825.1	RP11-469A15.2	RP11-469A15.2-001	NA	NA	NA	inter
LNCA_21_P0007321	5.3339095	P	5.829433	P	0.709304251449057	0	lncRNA	TCONS_00019584	NA	NA	NA	NA	XLOC_009382	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009382), lincRNA [TCONS_00019584]"	chr11:15932586-15932527	hs|11p15.2	Agilent_HUMAN_G3V2	TCONS_00019584	TCONS_00019584	chr11	 15932527	 15932586	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11632_PI429285431	6.4044504	P	6.012665	P	1.31201607849144	0	lncRNA	13209-1_{1..680}	lnc-TRUB2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRUB2-2:1	chr9	131214292	131214971	-	lnc-TRUB2-2	lnc-TRUB2-2:1	XLOC_007861	linc-TRUB2-1	ODF2	NA	chr9:131206867-131224331	inter
CUST_16822_PI429285431	0.9609725	A	0.9598323	A	1.00079063880549	0	lncRNA	18529-1_{1..358}	lnc-AC013480.1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC013480.1.1-4:1	chr2	 42329900	 42330257	-	lnc-AC013480.1.1-4	lnc-AC013480.1.1-4:1	XLOC_002060	linc-SLC8A1-2	NA	NA	NA	inter
CUST_51370_PI429285431	7.966106	P	6.8734894	P	2.13260474103322	0	lncRNA	54966-1_{1..984}	hg19_lincRNAsTranscripts_TCONS_l2_00009281 range=chr15:90827638-90828974 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009281 range=chr15:90827638-90828974 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 90827638	 90828621	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48953_PI429285431	4.6054955	P	4.637984	P	0.977732354872059	0	lncRNA	52794-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00019025 range=chr3:181670177-181728449 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019025 range=chr3:181670177-181728449 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	181673177	181676176	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20"	NA	inter
LNCA_21_P0005712	1.9432333	A	2.5984626	A	0.634974561250168	0	lncRNA	TCONS_00014741	NA	NA	NA	NA	XLOC_006825	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006825), lincRNA [TCONS_00014741]"	chr8:65929976-65930035	hs|8q12.3	Agilent_HUMAN_G3V2	TCONS_00014741	TCONS_00014741	chr8	 65929976	 65930035	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11007_PI429285431	2.0557284	A	3.0463223	P	0.503270555966677	0	lncRNA	12552-1_{1..746}	lnc-PBX3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PBX3-1:1	chr9	128507681	128508426	+	lnc-PBX3-1	lnc-PBX3-1:1	XLOC_007565	linc-PBX3-1	PBX3	NA	chr9:128509617-128518398	inter
CUST_22539_PI429285431	6.5729594	P	7.02138	P	0.732844695587746	0	lncRNA	24126-1_{1..621}	lnc-RP11-392O18.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-392O18.1.1-1:2	chr3	150437656	150438276	+	lnc-RP11-392O18.1.1-1	lnc-RP11-392O18.1.1-1:2	ENSG00000240137.1	RP11-103G8.2	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_SNRPC:range=chr6:34725321-347413475'pad=0,hg19_refFlat_SNRPC:range=chr6:34725321-347413475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10"	NA	inter
CUST_7921_PI429285431	1.3783679	A	0.91392463	A	1.37978479744828	0	lncRNA	9533-2_{3001..6000}	lnc-LECT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LECT1-1:1	chr13	 53271955	 53274954	-	lnc-LECT1-1	lnc-LECT1-1:1	ENSG00000248190	XLOC_010622	SUGT1	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70chr13:53258955-53262433"	NA	inter
LNCA_21_P0006922	0.99868846	A	1.3612112	A	0.777803299543976	0	lncRNA	TCONS_00018352	NA	NA	NA	NA	XLOC_008636	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008636), lincRNA [TCONS_00018352]"	chr10:120004852-120004911	hs|10q26.11	Agilent_HUMAN_G3V2	TCONS_00018352	TCONS_00018352	chr10	120004852	120004911	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17524_PI429285431	2.8583028	A	1.2963538	A	2.95252443628741	0	lncRNA	19248-1_{1..2280}	lnc-RIPK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RIPK2-1:1	chr8	 89726432	 89728711	+	lnc-RIPK2-1	lnc-RIPK2-1:1	XLOC_006867	linc-RIPK2	NA	NA	NA	inter
CUST_46213_PI429285431	0.9341024	A	0.9278538	A	1.00434059267326	0	lncRNA	50455-1_{1..780}	"gi|397139492|ref|XR_159010.1| PREDICTED: Homo sapiens uncharacterized LOC100996416 (LOC100996416), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139492|ref|XR_159010.1| PREDICTED: Homo sapiens uncharacterized LOC100996416 (LOC100996416), misc_RNA"	NA	NA	NA	NA	NA	XR_159010.1	NA	NA	NA	NA	NA	Unknown
CUST_45896_PI429285431	0.9213686	A	1.0423788	A	0.919543544862717	0	lncRNA	50208-5_{12001..12242}	"gi|403048746|ref|NR_073141.1| Homo sapiens progesterone receptor (PGR), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|403048746|ref|NR_073141.1| Homo sapiens progesterone receptor (PGR), transcript variant 4, non-coding RNA"	Chr11	100912355	100912596	-	5241	NR_073141.2	NA	NA	NA	NA	NA	inter
CUST_1596_PI429285431	1.6908228	A	1.005186	A	1.60841177154818	0	lncRNA	1582-1_{1..690}	"transcript_id ""ENST00000456535.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456535.1"" | genecode_v17"	chr3	186194516	186195205	+	ENSG00000226859.1	ENST00000456535.1	RP11-48F14.2	RP11-48F14.2-001	NA	NA	NA	inter
CUST_23285_PI429285431	2.5074623	A	1.8967261	A	1.52703825008736	0	lncRNA	24856-1_{1..612}	lnc-NOL11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-NOL11-1:1	chr17	 65521189	 65521800	+	lnc-NOL11-1	lnc-NOL11-1:1	ENSG00000264754.1	CTD-2653B5.1	PITPNC1	NA	chr17:65511189-65531538	inner
CUST_30250_PI429285431	1.6718553	A	1.7840016	A	0.925210600049017	0	lncRNA	32025-1_{1..363}	n335126|AY187238|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250923|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250923|1.4987800|-0.1819169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335126|AY187238|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250923|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250923|1.4987800|-0.1819169	chr16	 50746105	 50746467	+	NA	NA	NA	NA	NOD2	NA	chr16:50736105-50766987	inner
CUST_15599_PI429285431	0.921655	A	1.5038853	A	0.667930407754011	0	lncRNA	17286-1_{1..886}	lnc-UTRN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UTRN-1:1	chr6	144609102	144609987	+	lnc-UTRN-1	lnc-UTRN-1:1	XLOC_005492	linc-UTRN	UTRN	NA	chr6:144612873-144619320	inter
CUST_12304_PI429285431	3.183643	P	4.1535554	P	0.510537061566123	0	lncRNA	13917-1_{1..226}	lnc-FOXF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXF1-1:1	chr16	 86337941	 86338166	+	lnc-FOXF1-1	lnc-FOXF1-1:1	XLOC_011814	linc-FOXF1-1	NA	NA	NA	inter
CUST_28961_PI429285431	3.9523962	P	4.492488	P	0.687727146972574	0	lncRNA	30682-1_{1..549}	n326391|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046024|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046024|-1.3129300|-0.4916658	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326391|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046024|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046024|-1.3129300|-0.4916658	chr1	147194945	147195493	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33501_PI429285431	1.2731075	A	1.2345533	A	1.02708401622893	0	lncRNA	35073-1_{1..1813}	n340240|AK001013|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2701|NULL|-1.1462500|-0.2925176	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340240|AK001013|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2701|NULL|-1.1462500|-0.2925176	chr4	141782329	141784141	-	NA	NA	NA	NA	RNF150	NA	chr4:141786725-141795342	inter
LNCA_21_P0003113	2.6378927	A	0.9227327	A	3.28333054806088	0	lncRNA	TCONS_00006492	NA	NA	NA	NA	XLOC_003094	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003094), lincRNA [TCONS_00006492]"	chr3:40758960-40758901	hs|3p22.1	Agilent_HUMAN_G3V2	TCONS_00006492	TCONS_00006492	chr3	 40758901	 40758960	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18592_PI429285431	2.3609421	A	2.895711	A	0.690269239527504	0	lncRNA	20299-1_{1..1305}	lnc-PPIAL4G-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PPIAL4G-4:2	chr1	143467571	143468875	-	lnc-PPIAL4G-4	lnc-PPIAL4G-4:2	ENSG00000185044	BX004987.4	NA	NA	NA	inter
CUST_17907_PI429285431	1.3913696	A	2.1592	A	0.587300023225042	0	lncRNA	19638-1_{1..933}	lnc-RFT1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RFT1-1:2	chr3	 53119766	 53120698	-	lnc-RFT1-1	lnc-RFT1-1:2	XLOC_003130	linc-SFMBT1	RFT1	NA	chr3:53122499-53130125	inter
CUST_43773_PI429285431	1.5463624	A	1.2414504	A	1.23534328265398	0	lncRNA	48506-4_{9001..12000}	"gi|410170795|ref|XR_171117.1| PREDICTED: Homo sapiens hydrocephalus-inducing protein homolog (LOC100996292), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170795|ref|XR_171117.1| PREDICTED: Homo sapiens hydrocephalus-inducing protein homolog (LOC100996292), misc_RNA"	NA	NA	NA	NA	NA	XR_171117.1	NA	NA	NA	NA	NA	Unknown
CUST_39732_PI429285431	4.8285413	P	4.855969	P	0.981168144557613	0	lncRNA	40660-1_{1..3000}	n405704|NR_002940_2|lncRNA|Homosapiens||RefGeneNoncode|NR_002940_2||0.9168350|-0.1984682	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405704|NR_002940_2|lncRNA|Homosapiens||RefGeneNoncode|NR_002940_2||0.9168350|-0.1984682	chr17	   197720	   200719	-	NA	NA	NA	NA	VPS53	"hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20chr17:411908-434115"	NA	inner
CUST_38456_PI429285431	5.5490294	P	5.473526	P	1.05372864965937	0	lncRNA	39476-1_{1..229}	n382778|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bxp.3||0.2851130|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382778|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bxp.3||0.2851130|-1.0000000	chr15	102292939	102293167	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13156_PI429285431	0.9012866	A	0.89793825	A	1.00232359473378	0	lncRNA	14783-1_{1..981}	lnc-CDK20-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK20-3:1	chr9	 90468207	 90469187	-	lnc-CDK20-3	lnc-CDK20-3:1	XLOC_007760	linc-GAS1-1	NA	NA	NA	inter
CUST_10157_PI429285431	2.4491212	A	2.7995114	A	0.784371923245017	0	lncRNA	11681-1_{1..287}	lnc-ATAD5-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATAD5-3:2	chr17	 29085190	 29085476	+	lnc-ATAD5-3	lnc-ATAD5-3:2	XLOC_012162	linc-ATAD5-2	NA	NA	NA	inter
CUST_14156_PI429285431	3.1894457	P	3.72123	P	0.691698723928499	0	lncRNA	15807-1_{1..333}	lnc-GDF10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GDF10-1:1	chr10	 48498957	 48499289	-	lnc-GDF10-1	lnc-GDF10-1:1	XLOC_008810	linc-GDF10-2	NA	NA	NA	inter
CUST_16597_PI429285431	2.6327772	A	2.662719	A	0.979459809340616	0	lncRNA	18298-1_{1..532}	lnc-SLC38A2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC38A2-1:2	chr12	 46888055	 46888586	-	lnc-SLC38A2-1	lnc-SLC38A2-1:2	XLOC_010061	linc-SLC38A2	NA	NA	NA	inter
CUST_23974_PI429285431	4.3469534	P	4.7060947	P	0.779628480735747	0	lncRNA	25529-1_{1..1119}	lnc-FAM43A-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM43A-4:1	chr3	194310584	194311702	+	lnc-FAM43A-4	lnc-FAM43A-4:1	ENSG00000231770.1	AC046143.5	TMEM44	NA	chr3:194308402-194320989	inner
CUST_31636_PI429285431	9.312888	P	9.216813	P	1.06886155564474	0	lncRNA	33388-1_{1..1553}	n338157|BC040262|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|546|NULL|-0.8858870|-0.2608437	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338157|BC040262|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|546|NULL|-0.8858870|-0.2608437	chr22	 44208372	 44209924	+	NA	NA	NA	NA	EFCAB6	NA	chr22:44198372-44208217	inter
CUST_43226_PI429285431	10.073368	P	9.656296	P	1.33521493766695	0	lncRNA	48041-1_{1..684}	ENST00000600056 havana:sense_intronic chromosome:GRCh37:19:4061613:4062747:-1 gene:ENSG00000268670 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000600056 havana:sense_intronic chromosome:GRCh37:19:4061613:4062747:-1 gene:ENSG00000268670 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	  4061613	  4062296	-	ENSG00000268670	ENST00000600056	NA	NA	ZBTB7A	NA	chr19:4051613-4066816	inner
CUST_14769_PI429285431	2.8908854	A	2.3146238	A	1.49098071780052	0	lncRNA	16430-1_{1..646}	lnc-SH3BP4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SH3BP4-3:1	chr2	235631777	235632422	+	lnc-SH3BP4-3	lnc-SH3BP4-3:1	XLOC_001903	linc-SH3BP4-1	NA	NA	NA	inter
CUST_51567_PI429285431	15.754633	P	15.432885	P	1.24984396940977	0	lncRNA	55132-1_{1..2144}	hg19_lincRNAsTranscripts_TCONS_l2_00010598 range=chr17:19398722-19401003 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010598 range=chr17:19398722-19401003 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 19398722	 19400865	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-58.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30"	NA	inter
CUST_49471_PI429285431	3.3457592	P	3.8187165	P	0.720486198610515	0	lncRNA	53266-1_{1..1086}	hg19_lincRNAsTranscripts_TCONS_l2_00024510 range=chr6:161347430-161364091 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024510 range=chr6:161347430-161364091 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	161347430	161348515	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44415_PI429285431	1.3603274	A	1.1341741	A	1.16971195041199	0	lncRNA	49028-1_{1..984}	"gi|337756406|ref|NR_039978.1| Homo sapiens SEC24B antisense RNA 1 (SEC24B-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|337756406|ref|NR_039978.1| Homo sapiens SEC24B antisense RNA 1 (SEC24B-AS1), non-coding RNA"	Chr4	110351119	110352102	-	100533182	NR_039978.1	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00"	NA	inter
CUST_45566_PI429285431	4.2786736	P	4.3677583	P	0.940119006909821	0	lncRNA	49964-2_{3001..5270}	"gi|224177505|ref|NR_024497.2| Homo sapiens uncharacterized LOC399744 (LOC399744), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224177505|ref|NR_024497.2| Homo sapiens uncharacterized LOC399744 (LOC399744), non-coding RNA"	Chr10	 38720074	 38722343	+	399744	NR_024497.2	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90"	NA	inter
CUST_47510_PI429285431	0.9183488	A	0.9229353	A	0.99682592850603	0	lncRNA	51522-1_{1..1108}	"gi|336595307|ref|NR_038950.1| Homo sapiens uncharacterized LOC100506195 (LOC100506195), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336595307|ref|NR_038950.1| Homo sapiens uncharacterized LOC100506195 (LOC100506195), transcript variant 2, non-coding RNA"	Chr22	 34120972	 34122079	+	100506195	NR_038950.1	NA	NA	NA	NA	NA	inter
CUST_6548_PI429285431	3.4138217	P	4.222029	P	0.57109105779098	0	lncRNA	6496-1_{1..615}	"transcript_id ""ENST00000597574.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597574.1"" | genecode_v17"	chr19	 48969623	 48970237	+	ENSG00000269423.1	ENST00000597574.1	CTC-273B12.6	CTC-273B12.6-001	CYTH2	NA	chr19:48972465-48980237	inter
CUST_26709_PI429285431	1.7009878	A	1.4589223	A	1.18268469425902	0	lncRNA	28206-1_{1..3000}	n1834|AF400486|UBE3AantisenseRNA|Homosapiens|UBE3AantisenseRNA|NONCODEv2.0|n1834|NULL|-1.5906100|-0.1725533	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n1834|AF400486|UBE3AantisenseRNA|Homosapiens|UBE3AantisenseRNA|NONCODEv2.0|n1834|NULL|-1.5906100|-0.1725533	chr15	 25299013	 25302012	+	NA	NA	NA	NA	SNRPN	NA	chr15:25289013-25370804	inter
CUST_39057_PI429285431	1.1602907	A	0.90953326	A	1.18983163335798	0	lncRNA	40034-1_{1..3000}	n385512|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aaa.2||-0.8727500|-0.3018033	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385512|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aaa.2||-0.8727500|-0.3018033	chr9	 37505586	 37508585	+	NA	NA	NA	NA	POLR1E	"hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70chr9:37495586-37503693"	NA	inter
CUST_39398_PI429285431	1.0702296	A	0.90217537	A	1.12354213548074	0	lncRNA	40361-1_{1..3000}	n386585|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010pbf.1||1.3938300|-0.2144233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386585|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010pbf.1||1.3938300|-0.2144233	chr1	149279475	149282474	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-14.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-55.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90"	NA	inter
CUST_37173_PI429285431	0.922337	A	1.4329197	A	0.70193886969984	0	lncRNA	38288-1_{1..696}	n345607|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1156|NULL|-1.3492300|-0.3635993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345607|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1156|NULL|-1.3492300|-0.3635993	chr3	172556840	172557535	-	NA	NA	NA	NA	SPATA16	NA	chr3:172546840-172567536	inter
LNCA_21_P0001985	1.6147609	A	0.9156598	A	1.62349292777437	0	lncRNA	ENST00000416685	NA	NA	NA	NA	XLOC_001927	NA	ENST00000416685	THC2636941	NA	"BROAD Institute lincRNA (XLOC_001927), lincRNA [TCONS_00003142]"	chr2:306130-306071	hs|2p25.3	Agilent_HUMAN_G3V2	ENST00000416685	ENST00000416685	chr2	   306071	   306130	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19241_PI429285431	1.4986385	A	1.5460144	A	0.967694857253061	0	lncRNA	20910-1_{1..478}	lnc-CCDC122-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-CCDC122-1:1	chr13	 44732158	 44732635	-	lnc-CCDC122-1	lnc-CCDC122-1:1	ENSG00000235285.1	C13orf44-IT1	NA	NA	NA	inter
CUST_10181_PI429285431	0.9167573	A	0.90847135	A	1.00575990772524	0	lncRNA	11707-1_{1..685}	lnc-RP11-511B23.3.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-511B23.3.1-2:2	chr12	 93486215	 93486899	+	lnc-RP11-511B23.3.1-2	lnc-RP11-511B23.3.1-2:2	XLOC_009838	linc-NUDT4-3	NA	NA	NA	inter
CUST_24288_PI429285431	6.2390337	P	6.6065	P	0.775142628493405	0	lncRNA	25839-1_{1..466}	lnc-TAB2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TAB2-1:2	chr6	149551068	149551533	+	lnc-TAB2-1	lnc-TAB2-1:2	ENSG00000228408.1	RP1-111D6.3	NA	NA	NA	inter
CUST_28372_PI429285431	3.5089536	P	3.7467945	P	0.848013478162628	0	lncRNA	30023-1_{1..247}	n325686|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045356|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045356|-1.2835500|-0.2950951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325686|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045356|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045356|-1.2835500|-0.2950951	chr13	 77502115	 77502361	+	NA	NA	NA	NA	IRG1	NA	chr13:77511985-77519355	inter
LNCA_21_P0004962	3.7725341	P	3.937499	P	0.891950219828693	0	lncRNA	TCONS_00012002	NA	NA	NA	NA	XLOC_005515	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005515), lincRNA [TCONS_00012002]"	chr6:156693498-156693557	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_00012002	TCONS_00012002	chr6	156693498	156693557	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27380_PI429285431	0.91392463	A	0.9091016	A	1.00334866393588	0	lncRNA	28942-1_{1..593}	n324542|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000156311|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000156311|-1.0295300|-0.3524185	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324542|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000156311|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000156311|-1.0295300|-0.3524185	chr6	 31249490	 31250082	-	NA	NA	NA	NA	HLA-C	NA	chr6:31239490-31239855	inter
CUST_45947_PI429285431	8.343405	P	8.180966	P	1.11917760558476	0	lncRNA	50246-3_{6001..9000}	"gi|242247131|ref|NR_027948.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant beta, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|242247131|ref|NR_027948.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant beta, non-coding RNA"	Chr12	  1106404	  1109403	+	23085	NR_027948.1	NA	NA	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10"	NA	inter
CUST_2329_PI429285431	0.92631286	A	1.5257399	A	0.660016025809182	0	lncRNA	2321-1_{1..543}	"transcript_id ""ENST00000503320.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503320.1"" | genecode_v17"	chr5	117931883	117932425	+	ENSG00000249128.1	ENST00000503320.1	RP11-2N5.1	RP11-2N5.1-001	NA	NA	NA	inter
CUST_36584_PI429285431	1.1862942	A	0.9274557	A	1.19651501393064	0	lncRNA	37778-1_{1..1550}	n345080|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_629|NULL|-1.3947900|-0.3283851	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345080|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_629|NULL|-1.3947900|-0.3283851	chrX	 40715244	 40716793	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5727_PI429285431	7.1356807	P	7.3764305	P	0.846305354739593	0	lncRNA	5651-1_{1..718}	"transcript_id ""ENST00000585228.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585228.1"" | genecode_v17"	chr17	 12104917	 12105634	+	ENSG00000265400.1	ENST00000585228.1	RP11-471L13.2	RP11-471L13.2-001	NA	NA	NA	inter
CUST_29564_PI429285431	4.3704367	P	4.3225946	P	1.0337175917956	0	lncRNA	31324-1_{1..389}	n333061|AF255682|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075143|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075143|0.5559960|-0.0824189	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333061|AF255682|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075143|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075143|0.5559960|-0.0824189	chr12	 53774011	 53774399	+	NA	NA	NA	NA	SP1	NA	chr12:53773979-53786058	inner
CUST_32928_PI429285431	4.6332784	P	4.5966444	P	1.0257178960378	0	lncRNA	34550-1_{1..701}	n339598|BC038192|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2042|NULL|-1.0486800|-0.3124932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n339598|BC038192|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2042|NULL|-1.0486800|-0.3124932	chr20	 22034727	 22035427	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18316_PI429285431	0.94367844	A	0.92284983	A	1.01454201335686	0	lncRNA	20043-1_{1..305}	lnc-RP11-88J22.1.1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-88J22.1.1-3:3	chr8	 94304829	 94305133	-	lnc-RP11-88J22.1.1-3	lnc-RP11-88J22.1.1-3:3	ENSG00000246662	RP11-163D8.1	NA	NA	NA	inter
CUST_31142_PI429285431	11.826082	P	11.933289	P	0.928383636904404	0	lncRNA	32937-1_{1..361}	n337471|EF095209|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394850|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394850|3.3774400|-0.1478489	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337471|EF095209|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394850|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394850|3.3774400|-0.1478489	chr7	  5568320	  5568680	-	NA	NA	NA	NA	ACTB	NA	chr7:5566779-5570232	inner
CUST_40304_PI429285431	7.051815	P	6.2487507	P	1.74480317457587	0	lncRNA	41107-1_{1..1743}	n408312|NR_029372|lncRNA|Homosapiens||RefGeneNoncode|NR_029372||5.7309100|-0.2786442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408312|NR_029372|lncRNA|Homosapiens||RefGeneNoncode|NR_029372||5.7309100|-0.2786442	chr7	 33053741	 33055483	-	NA	NA	NA	NA	FKBP9	NA	chr7:33043741-33046543	inner
CUST_46091_PI429285431	2.6134858	A	2.5860567	A	1.01919428994243	0	lncRNA	50358-1_{1..3000}	"gi|410170642|ref|XR_110372.3| PREDICTED: Homo sapiens uncharacterized LOC100129940 (LOC100129940), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170642|ref|XR_110372.3| PREDICTED: Homo sapiens uncharacterized LOC100129940 (LOC100129940), misc_RNA"	Chr12	 66253782	 66256781	-	100129940	XR_110372.4	NA	NA	NA	NA	NA	inter
CUST_18300_PI429285431	0.912769	A	0.91343415	A	0.999539059418617	0	lncRNA	20030-1_{1..420}	lnc-PPIAL4G-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPIAL4G-1:1	chr1	143721045	143721464	-	lnc-PPIAL4G-1	lnc-PPIAL4G-1:1	ENSG00000226637	BX284650.3	NA	"hg19_refFlat_FAM91A1:range=chr8:124780943-1248249445'pad=0,hg19_refFlat_FAM91A1:range=chr8:124780943-1248249445'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40"	NA	inter
CUST_1267_PI429285431	0.92450255	A	0.9300815	A	0.996140433882325	0	lncRNA	1259-1_{1..691}	"transcript_id ""ENST00000444926.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444926.1"" | genecode_v17"	chr2	235993466	235994156	-	ENSG00000226542.1	ENST00000444926.1	AC114814.4	AC114814.4-001	NA	NA	NA	inter
CUST_31208_PI429285431	5.635746	P	4.223816	P	2.66092896995019	0	lncRNA	33001-2_{3001..4491}	n337653|BC030786|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|32|NULL|1.9872600|-0.3883392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337653|BC030786|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|32|NULL|1.9872600|-0.3883392	chrX	 37211545	 37213035	+	NA	NA	NA	NA	PRRG1	NA	chrX:37208528-37316548	inner
CUST_49812_PI429285431	1.5786713	A	1.1539395	A	1.34232293896567	0	lncRNA	53567-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00025932 range=chr7:63539999-63546016 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025932 range=chr7:63539999-63546016 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 63539999	 63542998	+	NA	NA	NA	NA	ZNF727	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50chr7:63529999-63538927"	NA	inter
CUST_48513_PI429285431	6.4321194	P	6.178336	P	1.19232984764034	0	lncRNA	52366-1_{1..362}	hg19_lincRNAsTranscripts_TCONS_l2_00014801 range=chr2:112124911-112252691 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014801 range=chr2:112124911-112252691 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	112124911	112125272	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42758_PI429285431	5.143564	P	5.191441	P	0.967358800307353	0	lncRNA	45723-1_{1..129}	ENST00000516999 ncrna:snoRNA chromosome:GRCh37:1:155895749:155895877:-1 gene:ENSG00000252808 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516999 ncrna:snoRNA chromosome:GRCh37:1:155895749:155895877:-1 gene:ENSG00000252808 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	155895749	155895877	-	ENSG00000252808	ENST00000516999	NA	NA	KIAA0907	NA	chr1:155885749-155904188	inner
CUST_22965_PI429285431	1.3158313	A	1.6880722	A	0.772581533864505	0	lncRNA	24539-1_{1..425}	lnc-NDUFS6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFS6-2:1	chr5	  1884594	  1885018	+	lnc-NDUFS6-2	lnc-NDUFS6-2:1	ENSG00000249116.1	CTD-2194D22.3	IRX4	NA	chr5:1877541-1882880	inter
CUST_29389_PI429285431	9.124233	P	9.580857	P	0.728689445680289	0	lncRNA	31141-1_{1..367}	n332691|AF001545|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061643|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061643|2.0353500|-0.0738511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332691|AF001545|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061643|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061643|2.0353500|-0.0738511	chr11	 64661981	 64662347	-	NA	NA	NA	NA	ATG2A	NA	chr11:64662004-64672348	inner
CUST_40018_PI429285431	4.8743496	P	5.241304	P	0.775417714983966	0	lncRNA	40878-1_{1..1177}	n407169|NR_026588|lncRNA|Homosapiens||RefGeneNoncode|NR_026588||2.6199000|-0.3711576	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407169|NR_026588|lncRNA|Homosapiens||RefGeneNoncode|NR_026588||2.6199000|-0.3711576	chr1	245133630	245134806	+	NA	NA	NA	NA	EFCAB2	NA	chr1:245133171-245261148	inter
CUST_24538_PI429285431	5.557682	P	5.580394	P	0.984380510746761	0	lncRNA	26088-1_{1..532}	lnc-TRAPPC2L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRAPPC2L-1:1	chr16	 88949923	 88950454	+	lnc-TRAPPC2L-1	lnc-TRAPPC2L-1:1	ENSG00000259881.1	RP11-830F9.5	CBFA2T3	NA	chr16:88941263-88960327	inner
CUST_30173_PI429285431	0.9272946	A	1.798877	A	0.546547049215462	0	lncRNA	31947-1_{1..520}	n334865|AJ315537|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247165_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247165_08|-0.5043220|-0.2491195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334865|AJ315537|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247165_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247165_08|-0.5043220|-0.2491195	chr6	  3062818	  3063337	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.12;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80"	NA	inter
CUST_5391_PI429285431	0.9114101	A	0.92581165	A	0.990067264939589	0	lncRNA	5325-1_{1..682}	"transcript_id ""ENST00000566922.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566922.1"" | genecode_v17"	chr16	  1562980	  1563661	+	ENSG00000260646.1	ENST00000566922.1	LA16c-385E7.1	LA16c-385E7.1-001	IFT140	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70chr16:1560428-1574676"	NA	inner
CUST_34917_PI429285431	1.0344719	A	2.1376653	A	0.465485005296076	0	lncRNA	36339-1_{1..3000}	n341835|BC036606|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4314|NULL|-1.2986500|-0.3890660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341835|BC036606|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4314|NULL|-1.2986500|-0.3890660	chr6	 37872574	 37875573	+	NA	NA	NA	NA	ZFAND3	NA	chr6:37862574-37885797	inner
CUST_22826_PI429285431	6.499108	P	6.5722704	P	0.950552094312528	0	lncRNA	24406-1_{1..71}	lnc-TMC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TMC2-1:1	chr20	  2637270	  2637340	+	lnc-TMC2-1	lnc-TMC2-1:1	ENSG00000229686.1	SNORD56	NOP56	NA	chr20:2633254-2639039	inter
LNCA_21_P0007594	1.3479545	A	0.9665723	A	1.30258922691155	0	lncRNA	TCONS_00020490	NA	NA	NA	NA	XLOC_009815	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009815), lincRNA [TCONS_00020490]"	chr12:79196773-79196832	hs|12q21.2	Agilent_HUMAN_G3V2	TCONS_00020490	TCONS_00020490	chr12	 79196773	 79196832	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46569_PI429285431	1.6403272	A	1.3355668	A	1.23521347822754	0	lncRNA	50753-1_{1..727}	"gi|310123416|ref|XR_109236.1| PREDICTED: Homo sapiens uncharacterized LOC100287175 (LOC100287175), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123416|ref|XR_109236.1| PREDICTED: Homo sapiens uncharacterized LOC100287175 (LOC100287175), misc_RNA"	Chr16	   686491	   687217	+	100287175	XR_109236.2	NA	NA	NA	NA	NA	inter
CUST_35504_PI429285431	4.5500336	P	4.9259715	P	0.770604277874056	0	lncRNA	36913-1_{1..1363}	n342609|L10403|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5110|NULL|0.7518020|-0.2378570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n342609|L10403|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5110|NULL|0.7518020|-0.2378570	chr4	 74919754	 74921116	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50235_PI429285431	6.774025	P	6.375097	P	1.3185278096143	0	lncRNA	53959-1_{1..1150}	hg19_lincRNAsTranscripts_TCONS_l2_00029333 range=chr9:67329366-67340169 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029333 range=chr9:67329366-67340169 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 67329366	 67330515	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37854_PI429285431	0.95626295	A	0.926847	A	1.02059887035794	0	lncRNA	38945-1_{1..999}	n346384|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1934|NULL|-1.3336800|-0.3034960	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346384|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1934|NULL|-1.3336800|-0.3034960	chr1	223213653	223214651	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40673_PI429285431	0.90453017	A	0.9138092	A	0.99358890584238	0	lncRNA	41408-1_{1..1057}	n410229|NR_037170_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037170_6||-1.0842400|-0.3331224	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410229|NR_037170_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037170_6||-1.0842400|-0.3331224	chr6	  3468303	  3469359	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27044_PI429285431	0.96873784	A	1.370253	A	0.757062776402843	0	lncRNA	28575-1_{1..477}	n324150|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051737|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051737|-0.5354040|-0.2218486	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324150|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051737|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051737|-0.5354040|-0.2218486	chr9	 13436524	 13437000	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15080_PI429285431	3.0506864	A	3.15634	A	0.929383798259778	0	lncRNA	16744-1_{1..3000}	lnc-LTBP3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LTBP3-2:2	chr11	 65278484	 65281483	-	lnc-LTBP3-2	lnc-LTBP3-2:2	XLOC_009474	linc-SLC25A45-5	NA	NA	NA	inter
CUST_6025_PI429285431	1.0829751	A	0.914149	A	1.12414341328165	0	lncRNA	5951-1_{1..2409}	"transcript_id ""ENST00000574098.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000574098.1"" | genecode_v17"	chr17	 81168317	 81170725	-	ENSG00000262094.1	ENST00000574098.1	AC139099.5	AC139099.5-003	NA	NA	NA	inter
CUST_12247_PI429285431	1.1713825	A	1.4992089	A	0.796735962035291	0	lncRNA	13852-1_{1..905}	lnc-INTS10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INTS10-1:1	chr8	 19619243	 19620147	+	lnc-INTS10-1	lnc-INTS10-1:1	XLOC_006732	linc-INTS10	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.51;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.12;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.21"	NA	inter
CUST_40814_PI429285431	1.0175327	A	1.4433417	A	0.744421175806551	0	lncRNA	41519-1_{1..3000}	n410582|NR_037846_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037846_5||0.0567725|-0.2674892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410582|NR_037846_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037846_5||0.0567725|-0.2674892	chr6	  3087408	  3090407	+	NA	NA	NA	NA	BPHL	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-62.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70chr6:3118926-3122321"	NA	inner
LNCA_21_P0004558	1.0251637	A	1.0286782	A	0.997566899034159	0	lncRNA	TCONS_00010942	NA	NA	NA	NA	XLOC_004850	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004850), lincRNA [TCONS_00010942]"	chr5:65731164-65731105	hs|5q12.3	Agilent_HUMAN_G3V2	TCONS_00010942	TCONS_00010942	chr5	 65731105	 65731164	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45954_PI429285431	3.7813108	P	2.115957	A	3.17191431697497	0	lncRNA	50248-2_{3001..6000}	"gi|242247144|ref|NR_027949.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant gamma, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|242247144|ref|NR_027949.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant gamma, non-coding RNA"	NA	NA	NA	NA	NA	NR_027949.1	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70"	NA	Unknown
CUST_8016_PI429285431	1.670871	A	0.9310477	A	1.66997128973854	0	lncRNA	9628-1_{1..912}	lnc-CNTRL-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CNTRL-1:5	chr9	123613516	123614427	+	lnc-CNTRL-1	lnc-CNTRL-1:5	ENSG00000226752	RP11-27I1.2	PSMD5	NA	chr9:123603516-123605206	inter
CUST_42972_PI429285431	0.93031776	A	0.9266033	A	1.00257798477898	0	lncRNA	46116-1_{1..207}	ENST00000516245 ncrna:snoRNA chromosome:GRCh37:7:54933511:54933717:1 gene:ENSG00000252054 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516245 ncrna:snoRNA chromosome:GRCh37:7:54933511:54933717:1 gene:ENSG00000252054 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 54933511	 54933717	+	ENSG00000252054	ENST00000516245	NA	NA	NA	NA	NA	inter
CUST_2793_PI429285431	4.812394	P	4.9440722	P	0.91276906332527	0	lncRNA	2777-1_{1..368}	"transcript_id ""ENST00000583191.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583191.1"" | genecode_v17"	chr7	 30565347	 30565714	+	ENSG00000264520.1	ENST00000583191.1	RP4-777O23.2	RP4-777O23.2-001	NA	NA	NA	inter
CUST_49929_PI429285431	6.633953	P	7.2415915	P	0.656270050057352	0	lncRNA	53679-1_{1..507}	hg19_lincRNAsTranscripts_TCONS_l2_00026118 range=chr7:98908071-98908748 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026118 range=chr7:98908071-98908748 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 98908071	 98908577	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48120_PI429285431	2.0159817	A	0.9232829	A	2.13272625327167	0	lncRNA	51991-1_{1..2048}	"gi|397137257|ref|XR_159198.1| PREDICTED: Homo sapiens anthrax toxin receptor-like (ANTXRL), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397137257|ref|XR_159198.1| PREDICTED: Homo sapiens anthrax toxin receptor-like (ANTXRL), misc_RNA"	NA	NA	NA	NA	NA	XR_159198.1	NA	NA	NA	NA	NA	Unknown
CUST_8451_PI429285431	4.9812317	P	5.3069453	P	0.797903621802286	0	lncRNA	10020-1_{1..3000}	lnc-MUC5B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MUC5B-1:1	chr11	  1295067	  1298066	+	lnc-MUC5B-1	lnc-MUC5B-1:1	ENSG00000227631	ENST00000446839	TOLLIP	"hg19_refFlat_TOLLIP:range=chr11:1298269-13307285'pad=0,hg19_refFlat_TOLLIP:range=chr11:1298269-13307285'pad=0 3'pad=0 strand=- repeatMasking=none,-108.00chr11:1295598-1309533"	NA	inner
CUST_46501_PI429285431	9.8103485	P	9.459466	P	1.27534051760323	0	lncRNA	50695-1_{1..2786}	"gi|187829205|ref|NR_023318.1| Homo sapiens ADP-dependent glucokinase (ADPGK), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|187829205|ref|NR_023318.1| Homo sapiens ADP-dependent glucokinase (ADPGK), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_023318.1	NA	NA	NA	NA	NA	Unknown
CUST_33651_PI429285431	1.002906	A	0.9961829	A	1.00467097295193	0	lncRNA	35215-1_{1..2190}	n340414|BC042074|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2875|NULL|-1.1431600|-0.2932297	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n340414|BC042074|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2875|NULL|-1.1431600|-0.2932297	chr5	 16373469	 16375658	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42054_PI429285431	1.127992	A	0.9021875	A	1.16942918364546	0	lncRNA	43959-1_{1..100}	ENST00000384854 ncrna:miRNA chromosome:GRCh37:12:97957590:97957689:1 gene:ENSG00000207586 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384854 ncrna:miRNA chromosome:GRCh37:12:97957590:97957689:1 gene:ENSG00000207586 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 97957590	 97957689	+	ENSG00000207586	ENST00000384854	NA	NA	NA	NA	NA	inter
CUST_11125_PI429285431	0.9250358	A	0.9674411	A	0.971034661973571	0	lncRNA	12683-1_{1..1481}	lnc-AC010872.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC010872.2.1-2:1	chr2	 21267790	 21269270	+	lnc-AC010872.2.1-2	lnc-AC010872.2.1-2:1	XLOC_001386	linc-KLHL29-9	APOB	NA	chr2:21257790-21266945	inter
CUST_32235_PI429285431	0.90524614	A	0.9018025	A	1.00238980038845	0	lncRNA	33927-1_{1..2426}	n338808|BC063871|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1231|NULL|-0.9655600|-0.1495264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338808|BC063871|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1231|NULL|-0.9655600|-0.1495264	chr13	 95356997	 95359422	-	NA	NA	NA	NA	SOX21	NA	chr13:95361876-95364389	inter
CUST_11608_PI429285431	2.6060522	A	2.3553138	A	1.18981593063207	0	lncRNA	13188-1_{1..445}	lnc-RHOXF1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RHOXF1-1:2	chrX	119253450	119253894	-	lnc-RHOXF1-1	lnc-RHOXF1-1:2	XLOC_008222	linc-RHOXF1-1	RHOXF1	NA	chrX:119243450-119249847	inter
LNCA_19_P00321398	3.8789983	P	3.7910633	P	1.06284778713324	0	lncRNA	ENST00000522967	NA	NA	NA	NA	XLOC_006757	NA	ENST00000522967	NA	NA	"BROAD Institute lincRNA (XLOC_006757), lincRNA [TCONS_00014662]"	chr8:29728797-29728856	hs|8p12	Agilent_HUMAN_G3V2	ENST00000522967	ENST00000522967	chr8	 29728797	 29728856	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49262_PI429285431	0.9396577	A	1.1280184	A	0.877602353627906	0	lncRNA	53081-1_{1..324}	hg19_lincRNAsTranscripts_TCONS_l2_00022488 range=chr5:116751202-116843360 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022488 range=chr5:116751202-116843360 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	116751202	116751525	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49931_PI429285431	1.770504	A	1.7784458	A	0.994510287568496	0	lncRNA	53681-1_{1..1622}	hg19_lincRNAsTranscripts_TCONS_l2_00026127 range=chr7:99195689-99208643 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026127 range=chr7:99195689-99208643 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 99195689	 99197310	+	NA	NA	NA	NA	ZNF498	NA	chr7:99214571-99218643	inner
CUST_19734_PI429285431	1.8744851	A	2.5721478	A	0.616570299120018	0	lncRNA	21392-1_{1..646}	lnc-HMGB4-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMGB4-1:6	chr1	 34350687	 34351332	+	lnc-HMGB4-1	lnc-HMGB4-1:6	ENSG00000231163.1	AL121980.1	CSMD2	NA	chr1:34340687-34361024	inner
CUST_28380_PI429285431	0.9010671	A	0.8945201	A	1.00454834706365	0	lncRNA	30032-1_{1..3000}	n325695|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045273|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045273|-0.0719914|-0.3170442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325695|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045273|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045273|-0.0719914|-0.3170442	chr13	 73703594	 73706593	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.21;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
CUST_28902_PI429285431	0.9131544	A	1.0302852	A	0.922019520466844	0	lncRNA	30619-1_{1..448}	n326326|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000084254|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000084254|-1.2258900|-0.4068024	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326326|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000084254|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000084254|-1.2258900|-0.4068024	chr1	172245027	172245474	-	NA	NA	NA	NA	DNM3	NA	chr1:172235027-172261967	inner
CUST_38776_PI429285431	6.6360416	P	6.8858557	P	0.841004776834754	0	lncRNA	39768-1_{1..1889}	n384406|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ghh.3||-1.1018900|-0.1897357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384406|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ghh.3||-1.1018900|-0.1897357	chr4	  3510860	  3512748	-	NA	NA	NA	NA	LRPAP1	NA	chr4:3505324-3522749	inner
CUST_16957_PI429285431	1.2128785	A	1.0443083	A	1.123944034494	0	lncRNA	18669-1_{1..2264}	lnc-C22orf26-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C22orf26-2:6	chr22	 46440489	 46442752	-	lnc-C22orf26-2	lnc-C22orf26-2:6	XLOC_014404	linc-WNT7B-2	C22orf26	NA	chr22:46446339-46450024	inter
LNCA_19_P00325604	6.741044	P	6.977383	P	0.848896751887188	0	lncRNA	ENST00000553704	NA	HQ315778	NA	NA	lincROR	NA	ENST00000553704	NA	NA	"BROAD Institute lincRNA (lincROR), lincRNA [TCONS_00087323_lincROR]"	chr18:54722409-54722350	hs|18q21.31	Agilent_HUMAN_G3V2	ENST00000553704	ENST00000553704	chr18	 54722350	 54722409	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12860_PI429285431	0.93311155	A	0.92915374	A	1.00274711125656	0	lncRNA	14487-1_{1..215}	lnc-GABPA-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GABPA-6:1	chr21	 28602958	 28603172	+	lnc-GABPA-6	lnc-GABPA-6:1	XLOC_013894	linc-USP16-11	NA	NA	NA	inter
CUST_12689_PI429285431	0.968748	A	0.9203785	A	1.0340955526984	0	lncRNA	14307-1_{1..414}	lnc-OR4F3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-OR4F3-1:1	chr5	180791861	180792274	+	lnc-OR4F3-1	lnc-OR4F3-1:1	XLOC_004689	linc-OR4F16-1	OR4F3	NA	chr5:180794288-180795226	inter
CUST_6039_PI429285431	0.92670375	A	1.1804346	A	0.838724642788103	0	lncRNA	5965-1_{1..556}	"transcript_id ""ENST00000581430.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581430.1"" | genecode_v17"	chr18	  1269673	  1270228	-	ENSG00000132204.9	ENST00000581430.1	LINC00470	LINC00470-003	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80"	NA	inter
CUST_21850_PI429285431	6.1482396	P	6.3202085	P	0.887630471604437	0	lncRNA	23460-1_{1..549}	lnc-HBEGF-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HBEGF-2:1	chr5	139780696	139781244	-	lnc-HBEGF-2	lnc-HBEGF-2:1	ENSG00000249637.1	CTC-329D1.2	ANKHD1	"hg19_refFlat_SLC4A9:range=chr5:139739822-1397523835'pad=0,hg19_refFlat_SLC4A9:range=chr5:139739822-1397523835'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20chr5:139781399-139790952"	NA	inter
CUST_47944_PI429285431	8.920063	P	8.204639	P	1.64196571125145	0	lncRNA	51836-1_{1..609}	"gi|410172454|ref|XR_171787.1| PREDICTED: Homo sapiens uncharacterized LOC101060493, transcript variant 6 (LOC101060493), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172454|ref|XR_171787.1| PREDICTED: Homo sapiens uncharacterized LOC101060493, transcript variant 6 (LOC101060493), misc_RNA"	NA	NA	NA	NA	NA	XR_171787.1	NA	NA	NA	NA	NA	Unknown
CUST_40217_PI429285431	6.4863605	P	4.918461	P	2.96472748566601	0	lncRNA	41042-1_{1..3000}	n408048|NR_027840|lncRNA|Homosapiens||RefGeneNoncode|NR_027840||3.4524300|-0.3558625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408048|NR_027840|lncRNA|Homosapiens||RefGeneNoncode|NR_027840||3.4524300|-0.3558625	chr3	197477260	197480259	+	NA	NA	NA	NA	LRCH3	NA	chr3:197518145-197521317	inter
CUST_5278_PI429285431	2.656321	A	1.9880954	A	1.5891172773954	0	lncRNA	5218-1_{1..470}	"transcript_id ""ENST00000558015.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558015.1"" | genecode_v17"	chr15	 85857898	 85858367	-	ENSG00000259451.1	ENST00000558015.1	RP11-561C5.6	RP11-561C5.6-004	NA	NA	NA	inter
LNCA_21_P0006255	0.9514045	A	0.91903067	A	1.02269349581088	0	lncRNA	TCONS_00016271	NA	NA	NA	NA	XLOC_007647	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007647), lincRNA [TCONS_00016271]"	chr9:11826237-11826178	hs|9p23	Agilent_HUMAN_G3V2	TCONS_00016271	TCONS_00016271	chr9	 11826178	 11826237	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2242_PI429285431	0.9109008	A	0.9131241	A	0.998460112718442	0	lncRNA	2234-1_{1..2300}	"transcript_id ""ENST00000504246.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504246.1"" | genecode_v17"	chr5	 87962138	 87964437	-	ENSG00000245526.3	ENST00000504246.1	LINC00461	LINC00461-002	NA	NA	NA	inter
CUST_18405_PI429285431	0.921937	A	0.9213344	A	1.00041777773583	0	lncRNA	20130-1_{1..1792}	lnc-UBC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-UBC-1:1	chr12	125361596	125363387	-	lnc-UBC-1	lnc-UBC-1:1	ENSG00000246139	RP11-592O2.1	NA	"hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40"	NA	inter
CUST_12560_PI429285431	3.2092524	P	1.8576279	A	2.55199322666464	0	lncRNA	14170-1_{1..1388}	lnc-C12orf74-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C12orf74-1:1	chr12	 92976775	 92978162	+	lnc-C12orf74-1	lnc-C12orf74-1:1	XLOC_009836	linc-C12orf74-1	NA	NA	NA	inter
CUST_5071_PI429285431	8.331534	P	8.294126	P	1.02626833714329	0	lncRNA	5011-1_{1..216}	"transcript_id ""ENST00000428654.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428654.1"" | genecode_v17"	chr14	106064028	106064243	-	ENSG00000227468.4	ENST00000428654.1	AL928742.12	AL928742.12-001	NA	NA	NA	inter
CUST_6762_PI429285431	8.334532	P	8.006891	P	1.2549596684647	0	lncRNA	6710-1_{1..1000}	"transcript_id ""ENST00000449602.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449602.1"" | genecode_v17"	chr21	 16742841	 16743840	-	ENSG00000229425.1	ENST00000449602.1	AJ006998.2	AJ006998.2-001	LOC100652984	NA	chr21:16742841-16767376	inter
CUST_4020_PI429285431	1.9087355	A	1.0775228	A	1.77918027656798	0	lncRNA	3981-1_{1..452}	"transcript_id ""ENST00000533588.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533588.1"" | genecode_v17"	chr11	 76386123	 76386574	+	ENSG00000254975.1	ENST00000533588.1	RP11-672A2.3	RP11-672A2.3-001	LRRC32	NA	chr11:76376123-76381791	inter
CUST_26538_PI429285431	1.1576304	A	0.9239081	A	1.17586488983377	0	lncRNA	28044-2_{3001..3485}	lnc-TBC1D8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBC1D8-1:1	chr2	101620556	101621040	-	lnc-TBC1D8-1	lnc-TBC1D8-1:1	ENSG00000223947.1	AC016738.4	TBC1D8	"hg19_refFlat_NPAS2:range=chr2:101521217-1016120445'pad=0,hg19_refFlat_NPAS2:range=chr2:101521217-1016120445'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.10chr2:101623690-101628706"	NA	inner
CUST_42709_PI429285431	6.264901	P	6.830472	P	0.67568793505686	0	lncRNA	45639-1_{1..141}	ENST00000516404 ncrna:snoRNA chromosome:GRCh37:5:138611869:138612009:1 gene:ENSG00000252213 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516404 ncrna:snoRNA chromosome:GRCh37:5:138611869:138612009:1 gene:ENSG00000252213 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	138611869	138612009	+	ENSG00000252213	ENST00000516404	NA	NA	MATR3	NA	chr5:138609441-138622009	inter
CUST_27636_PI429285431	0.9167431	A	0.9269421	A	0.992955521390713	0	lncRNA	29214-1_{1..516}	n324842|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171423|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171423|-1.0727200|-0.4619425	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324842|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171423|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171423|-1.0727200|-0.4619425	chr21	 26643969	 26644484	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36040_PI429285431	1.2499167	A	1.373753	A	0.9177440111586	0	lncRNA	37362-3_{6001..9000}	n344643|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_191|NULL|-1.3262900|-0.2857767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344643|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_191|NULL|-1.3262900|-0.2857767	chr2	216481716	216484715	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_TBX1:range=chr22:19747167-197543905'pad=0,hg19_refFlat_TBX1:range=chr22:19747167-197543905'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40"	NA	inter
CUST_39238_PI429285431	3.3693466	P	4.053965	P	0.62217037203866	0	lncRNA	40209-1_{1..557}	n386081|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010awi.1||-0.6162240|-0.1181287	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386081|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010awi.1||-0.6162240|-0.1181287	chr14	101540363	101540919	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49159_PI429285431	0.9224356	A	0.91155654	A	1.00756929312218	0	lncRNA	52985-1_{1..821}	hg19_lincRNAsTranscripts_TCONS_l2_00020763 range=chr4:130692825-130785484 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020763 range=chr4:130692825-130785484 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	130692825	130693645	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30936_PI429285431	4.6762233	P	4.8886976	P	0.863055773964484	0	lncRNA	32724-1_{1..295}	n337005|DQ065764|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341047|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341047|-1.0316300|-0.2602859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337005|DQ065764|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341047|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341047|-1.0316300|-0.2602859	chr2	190444574	190444868	-	NA	NA	NA	NA	SLC40A1	NA	chr2:190434574-190445537	inner
CUST_14302_PI429285431	1.0683134	A	0.91344154	A	1.11332272864623	0	lncRNA	15962-1_{1..747}	lnc-RP11-171N4.2.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-171N4.2.1-1:2	chr4	157563417	157564163	-	lnc-RP11-171N4.2.1-1	lnc-RP11-171N4.2.1-1:2	XLOC_004135	linc-CTSO-2	NA	NA	NA	inter
CUST_17682_PI429285431	0.9036658	A	1.0575069	A	0.898854121929239	0	lncRNA	19411-1_{1..311}	lnc-VSNL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VSNL1-1:1	chr2	 17442764	 17443074	+	lnc-VSNL1-1	lnc-VSNL1-1:1	XLOC_001372	linc-VSNL1-1	NA	NA	NA	inter
CUST_4363_PI429285431	1.3978051	A	0.92477965	A	1.38801720425001	0	lncRNA	4317-2_{3001..3632}	"transcript_id ""ENST00000605386.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000605386.1"" | genecode_v17"	chr12	 90105736	 90106367	+	ENSG00000271614.1	ENST00000605386.1	RP11-591N1.1	RP11-591N1.1-001	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-9.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40"	NA	inter
CUST_32701_PI429285431	8.120226	P	8.754793	P	0.644134111474963	0	lncRNA	34345-3_{6001..6368}	n339330|D87071|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1762|NULL|32.7604000|-0.0784163	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339330|D87071|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1762|NULL|32.7604000|-0.0784163	chr16	 88787754	 88788121	-	NA	NA	NA	NA	RNF166	NA	chr16:88771754-88772829	inner
CUST_50639_PI429285431	6.496966	P	6.50263	P	0.996081710975345	0	lncRNA	54319-3_{6001..7524}	hg19_lincRNAsTranscripts_TCONS_l2_00003441 range=chr10:27225454-27235683 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003441 range=chr10:27225454-27235683 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 27231454	 27232977	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_43283_PI429285431	1.1365229	A	1.7133588	A	0.670432550106963	0	lncRNA	48101-1_{1..184}	ENST00000602607 havana:sense_intronic chromosome:GRCh37:1:28100369:28100552:1 gene:ENSG00000269971 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602607 havana:sense_intronic chromosome:GRCh37:1:28100369:28100552:1 gene:ENSG00000269971 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr1	 28100369	 28100552	+	ENSG00000269971	ENST00000602607	NA	NA	STX12	NA	chr1:28099694-28110552	inner
CUST_44421_PI429285431	2.2613614	A	1.2346108	A	2.03743015039035	0	lncRNA	49034-1_{1..642}	"gi|397139073|ref|XR_158972.1| PREDICTED: Homo sapiens uncharacterized LOC100996694 (LOC100996694), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139073|ref|XR_158972.1| PREDICTED: Homo sapiens uncharacterized LOC100996694 (LOC100996694), misc_RNA"	Chr4	120860695	120861336	+	100996694	XR_158972.1	NA	NA	NA	NA	NA	inter
CUST_29322_PI429285431	0.9062971	A	0.9103186	A	0.997216390060156	0	lncRNA	31073-1_{1..393}	n332512|DQ866752|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468616|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468616|-1.3639300|-0.3635783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332512|DQ866752|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468616|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468616|-1.3639300|-0.3635783	chr10	111775421	111775813	-	NA	NA	NA	NA	ADD3	NA	chr10:111765726-111785814	inner
CUST_41204_PI429285431	7.8638825	P	8.016083	P	0.89987685980765	0	lncRNA	42081-1_{1..71}	ENST00000581953 ncrna:miRNA chromosome:GRCh37:HG104_HG975_PATCH:144815253:144815323:-1 gene:ENSG00000264143 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581953 ncrna:miRNA chromosome:GRCh37:HG104_HG975_PATCH:144815253:144815323:-1 gene:ENSG00000264143 gene_biotype:miRNA transcript_biotype:miRNA	chrHG104_HG975_PATCH	144815253	144815323	-	ENSG00000264143	ENST00000581953	NA	NA	NA	NA	NA	Unknown
CUST_38287_PI429285431	0.908817	A	0.9130835	A	0.997047056095151	0	lncRNA	39341-1_{1..1290}	n381921|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tgo.1||-0.2012400|-0.3111457	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381921|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tgo.1||-0.2012400|-0.3111457	chr12	100420028	100421317	-	NA	NA	NA	NA	UHRF1BP1L	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00chr12:100410028-100431318"	NA	inter
CUST_42017_PI429285431	1.3694415	A	0.9057837	A	1.37903378316058	0	lncRNA	43882-1_{1..79}	ENST00000581976 ncrna:miRNA chromosome:GRCh37:5:169455492:169455570:1 gene:ENSG00000263831 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581976 ncrna:miRNA chromosome:GRCh37:5:169455492:169455570:1 gene:ENSG00000263831 gene_biotype:miRNA transcript_biotype:miRNA	chr5	169455492	169455570	+	ENSG00000263831	ENST00000581976	NA	NA	DOCK2	NA	chr5:169445492-169465570	inner
CUST_29506_PI429285431	7.927403	P	6.5036993	P	2.6827334147077	0	lncRNA	31264-1_{1..458}	n332938|AF086566|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067445|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067445|1.2073100|-0.3093624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332938|AF086566|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067445|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067445|1.2073100|-0.3093624	chr2	 37334616	 37335073	-	NA	NA	NA	NA	EIF2AK2	NA	chr2:37333699-37357277	inner
CUST_30166_PI429285431	4.340613	P	4.3591056	P	0.987263708322209	0	lncRNA	31940-1_{1..297}	n334854|AJ310752|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247067|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247067|0.4112130|-0.0764149	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334854|AJ310752|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247067|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247067|0.4112130|-0.0764149	chr2	174820904	174821200	-	NA	NA	NA	NA	SP3	NA	chr2:174810904-174830430	inner
CUST_25510_PI429285431	3.6381395	P	3.732578	P	0.936636717520249	0	lncRNA	27040-1_{1..856}	lnc-C1orf201-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf201-1:2	chr1	 24648156	 24649011	-	lnc-C1orf201-1	lnc-C1orf201-1:2	ENSG00000232298.1	RP11-10N16.3	GRHL3	NA	chr1:24645812-24658391	inner
CUST_10628_PI429285431	0.9069054	A	0.9020195	A	1.00339238898047	0	lncRNA	12159-1_{1..251}	lnc-C8orf48-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C8orf48-1:2	chr8	 13494933	 13495183	+	lnc-C8orf48-1	lnc-C8orf48-1:2	XLOC_006723	linc-TUSC3	NA	NA	NA	inter
CUST_953_PI429285431	1.6697974	A	0.90386933	A	1.70046353617342	0	lncRNA	943-1_{1..1096}	"transcript_id ""ENST00000425953.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425953.1"" | genecode_v17"	chr2	 95873283	 95874378	+	ENSG00000233757.2	ENST00000425953.1	AC092835.2	AC092835.2-001	PROM2	NA	chr2:95863283-95890597	inter
CUST_4513_PI429285431	0.9322607	A	0.9419788	A	0.993286562872941	0	lncRNA	4462-1_{1..392}	"transcript_id ""ENST00000544036.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544036.1"" | genecode_v17"	chr12	130165972	130166363	-	ENSG00000256137.1	ENST00000544036.1	RP11-174M13.2	RP11-174M13.2-001	TMEM132D	NA	chr12:130155972-130192772	inner
LNCA_21_P0012166	1.9979702	A	3.8924236	P	0.268975486196949	0	lncRNA	BC039367	NA	BC039367	NA	Hs.637665	XLOC_l2_008910	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008910), lincRNA [TCONS_l2_00016931]"	chr20:48927311-48927252	hs|20q13.13	Agilent_HUMAN_G3V2	BC039367	BC039367	chr20	 48927252	 48927311	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44340_PI429285431	3.7074103	P	3.676178	P	1.02188461137627	0	lncRNA	48967-1_{1..3000}	"gi|375331937|ref|NR_046336.1| Homo sapiens family with sequence similarity 193, member A (FAM193A), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375331937|ref|NR_046336.1| Homo sapiens family with sequence similarity 193, member A (FAM193A), transcript variant 6, non-coding RNA"	Chr4	  2627159	  2630158	+	8603	NR_046336.1	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60"	NA	inter
CUST_31527_PI429285431	3.3360364	A	4.334258	P	0.50061672651207	0	lncRNA	33284-1_{1..524}	n338013|AF086143|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|400|NULL|-1.1837200|-0.1646171	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338013|AF086143|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|400|NULL|-1.1837200|-0.1646171	chr22	 29196696	 29197219	+	NA	NA	NA	NA	XBP1	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60chr22:29190548-29196560"	NA	inter
CUST_34925_PI429285431	0.9174738	A	0.9154091	A	1.00143216555467	0	lncRNA	36345-2_{3001..4757}	n341841|BX649153|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4320|NULL|-0.4680030|-0.3872813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341841|BX649153|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4320|NULL|-0.4680030|-0.3872813	chr12	 14918440	 14920196	-	NA	NA	NA	NA	H2AFJ	"hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-32.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-34.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50chr12:14927270-14930865"	NA	inter
LNCA_21_P0001448	0.9249227	A	0.9222684	A	1.00184151406963	0	lncRNA	TCONS_00001350	NA	NA	NA	NA	XLOC_000642	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000642), lincRNA [TCONS_00001350]"	chr1:246855108-246855167	hs|1q44	Agilent_HUMAN_G3V2	TCONS_00001350	TCONS_00001350	chr1	246855108	246855167	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50129_PI429285431	2.7574925	A	2.7455537	A	1.00830968087819	0	lncRNA	53857-1_{1..1394}	hg19_lincRNAsTranscripts_TCONS_l2_00029067 range=chr9:132250770-132275755 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029067 range=chr9:132250770-132275755 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132250770	132252163	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00321617	8.691033	P	8.991545	P	0.811964186146196	0	lncRNA	ENST00000450890	XR_109022	XR_109022	NA	NA	NA	0	ENST00000450890	THC2667891	NA	"PREDICTED: Homo sapiens hypothetical LOC100505562 (LOC100505562), miscRNA [XR_109022]"	chr10:33370678-33370737	hs|10p11.22	Agilent_HUMAN_G3V2	ENST00000450890	ENST00000450890	chr10	 33370678	 33370737	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38638_PI429285431	1.8111839	A	2.6980846	A	0.540774601714454	0	lncRNA	39641-1_{1..1317}	n383845|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wjz.1||-1.0753000|-0.3081138	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383845|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wjz.1||-1.0753000|-0.3081138	chr20	  3867914	  3869230	-	NA	NA	NA	NA	PANK2	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60chr20:3869486-3879231"	NA	inter
CUST_38877_PI429285431	0.92985034	A	0.95765024	A	0.980915046245472	0	lncRNA	39864-1_{1..2818}	n384784|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003mjk.2||1.7642800|-0.2042641	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384784|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003mjk.2||1.7642800|-0.2042641	chr5	178191865	178194682	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46097_PI429285431	7.850053	P	6.6370645	P	2.31817342512847	0	lncRNA	50362-2_{3001..3639}	"gi|313482850|ref|NR_037615.1| Homo sapiens CCR4-NOT transcription complex, subunit 2 (CNOT2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|313482850|ref|NR_037615.1| Homo sapiens CCR4-NOT transcription complex, subunit 2 (CNOT2), transcript variant 4, non-coding RNA"	Chr12	 70640494	 70641132	+	4848	NR_037615.1	NA	NA	NA	NA	NA	inter
CUST_41024_PI429285431	0.90365565	A	0.91222006	A	0.994081188942354	0	lncRNA	41684-1_{1..3000}	n411650|NR_040113|lncRNA|Homosapiens||RefGeneNoncode|NR_040113||5.5985600|-0.3554412	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411650|NR_040113|lncRNA|Homosapiens||RefGeneNoncode|NR_040113||5.5985600|-0.3554412	chr18	 14179095	 14182094	+	NA	NA	NA	NA	LOC100652806	NA	chr18:14234721-14237049	inter
CUST_41079_PI429285431	6.6043363	P	7.0683947	P	0.724944070257866	0	lncRNA	41761-1_{1..76}	ENST00000408524 ncrna:miRNA chromosome:GRCh37:20:56551074:56551149:1 gene:ENSG00000221451 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408524 ncrna:miRNA chromosome:GRCh37:20:56551074:56551149:1 gene:ENSG00000221451 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 56551074	 56551149	+	ENSG00000221451	ENST00000408524	NA	NA	NA	NA	NA	inter
CUST_38146_PI429285431	5.184743	P	3.3643975	P	3.53165765357464	0	lncRNA	39218-1_{1..2247}	n381336|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hgr.2||1.4842600|-0.2253742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381336|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hgr.2||1.4842600|-0.2253742	chr1	207974866	207977112	-	NA	NA	NA	NA	CD46	NA	chr1:207964866-207968861	inter
CUST_25665_PI429285431	1.1852173	A	1.0726628	A	1.08114085880357	0	lncRNA	27194-1_{1..639}	lnc-FNBP1L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FNBP1L-1:2	chr1	 94067695	 94068333	+	lnc-FNBP1L-1	lnc-FNBP1L-1:2	ENSG00000224093.1	RP5-1033H22.2	BCAR3	"hg19_refFlat_BCAR3:range=chr1:94027798-940794875'pad=0,hg19_refFlat_BCAR3:range=chr1:94027798-940794875'pad=0 3'pad=0 strand=- repeatMasking=none,-98.20;hg19_refFlat_BCAR3:range=chr1:94027798-941404865'pad=0,hg19_refFlat_BCAR3:range=chr1:94027798-941404865'pad=0 3'pad=0 strand=- repeatMasking=none,-98.20chr1:94057695-94077997"	NA	inner
CUST_39085_PI429285431	0.91521704	A	1.5620973	A	0.638659884535646	0	lncRNA	40061-1_{1..2012}	n385622|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aro.1||2.2663100|-0.0915963	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385622|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aro.1||2.2663100|-0.0915963	chr9	 94895115	 94897126	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37865_PI429285431	4.0116243	P	2.2533038	A	3.38304062093024	0	lncRNA	38957-1_{1..205}	n346400|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1950|NULL|-1.2809900|-0.2848016	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346400|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1950|NULL|-1.2809900|-0.2848016	chr2	112526931	112527135	-	NA	NA	NA	NA	ANAPC1	NA	chr2:112526638-112544487	inner
CUST_31036_PI429285431	6.5168166	P	7.0096426	P	0.710631724015803	0	lncRNA	32825-1_{1..705}	n337251|BC127703|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389331|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389331|3.0293400|-0.0431292	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337251|BC127703|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389331|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389331|3.0293400|-0.0431292	chr17	  4692841	  4693545	+	NA	NA	NA	NA	TM4SF5	NA	chr17:4682841-4686506	inner
CUST_49803_PI429285431	1.2873001	A	1.0358778	A	1.1903800886769	0	lncRNA	53559-1_{1..1024}	hg19_lincRNAsTranscripts_TCONS_l2_00025923 range=chr7:63360734-63374898 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025923 range=chr7:63360734-63374898 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 63360734	 63361757	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31787_PI429285431	3.3766897	P	2.9105623	A	1.38139642966442	0	lncRNA	33526-1_{1..471}	n338328|AF032107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|722|NULL|4.5209400|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338328|AF032107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|722|NULL|4.5209400|-1.0000000	chr14	 61189988	 61190458	-	NA	NA	NA	NA	SIX4	NA	chr14:61179988-61190852	inner
CUST_18798_PI429285431	4.833165	P	4.9503355	P	0.921994148735263	0	lncRNA	20493-1_{1..583}	lnc-AC091435.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC091435.1-1:2	chr5	 38845770	 38846352	-	lnc-AC091435.1-1	lnc-AC091435.1-1:2	ENSG00000249740	CTD-2127H9.1	OSMR	NA	chr5:38835770-38855870	inter
CUST_50627_PI429285431	7.6902304	P	7.625486	P	1.04589962299387	0	lncRNA	54311-1_{1..287}	hg19_lincRNAsTranscripts_TCONS_l2_00002904 range=chr10:19425689-19444121 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002904 range=chr10:19425689-19444121 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 19425689	 19425975	+	NA	NA	NA	NA	LOC100652979	NA	chr10:19415689-19454121	inter
CUST_13391_PI429285431	1.1282365	A	0.97775614	A	1.10993897603024	0	lncRNA	15027-1_{1..261}	lnc-RNF20-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF20-2:1	chr9	104654473	104654733	+	lnc-RNF20-2	lnc-RNF20-2:1	XLOC_007493	linc-CYLC2-3	NA	NA	NA	inter
CUST_41481_PI429285431	8.031408	P	8.056721	P	0.982607393764704	0	lncRNA	42681-1_{1..65}	ENST00000459306 ncrna:miRNA chromosome:GRCh37:4:99851074:99851138:-1 gene:ENSG00000238449 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459306 ncrna:miRNA chromosome:GRCh37:4:99851074:99851138:-1 gene:ENSG00000238449 gene_biotype:miRNA transcript_biotype:miRNA	chr4	 99851074	 99851138	-	ENSG00000238449	ENST00000459306	NA	NA	EIF4E	NA	chr4:99841074-99851786	inner
CUST_35129_PI429285431	4.8669233	P	4.608416	P	1.19624036109193	0	lncRNA	36532-1_{1..3000}	n342098|AK125137|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4580|NULL|16.5288000|-0.1921372	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342098|AK125137|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4580|NULL|16.5288000|-0.1921372	chr6	106808682	106811681	+	NA	NA	NA	NA	AIM1	NA	chr6:106959730-106979074	inner
CUST_23245_PI429285431	2.048202	A	2.8181112	A	0.586454383582031	0	lncRNA	24817-2_{3001..3513}	lnc-RP11-298P3.4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-RP11-298P3.4.1-1:1	chr13	 33073344	 33073856	-	lnc-RP11-298P3.4.1-1	lnc-RP11-298P3.4.1-1:1	ENSG00000230905.1	MINOS1P1	N4BP2L2	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80chr13:33060344-33082629"	NA	inner
CUST_1764_PI429285431	0.9291464	A	0.95165944	A	0.984516274609771	0	lncRNA	1750-1_{1..474}	"transcript_id ""ENST00000511634.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511634.1"" | genecode_v17"	chr4	 55199059	 55199532	+	ENSG00000248184.1	ENST00000511634.1	RP11-231C18.1	RP11-231C18.1-001	NA	NA	NA	inter
CUST_17689_PI429285431	1.8429022	A	2.4040272	A	0.677773436262577	0	lncRNA	19418-1_{1..759}	lnc-WAPAL-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WAPAL-1:2	chr10	 88162847	 88163605	-	lnc-WAPAL-1	lnc-WAPAL-1:2	XLOC_008883	linc-GRID1	NA	NA	NA	inter
CUST_32892_PI429285431	1.4011562	A	2.666469	A	0.416009159952622	0	lncRNA	34519-1_{1..739}	n339560|BC069037|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2002|NULL|2.4987900|-0.1563462	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339560|BC069037|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2002|NULL|2.4987900|-0.1563462	chr20	  4173736	  4174474	+	NA	NA	NA	NA	SMOX	NA	chr20:4163736-4168369	inter
CUST_2141_PI429285431	0.91687214	A	0.91452795	A	1.00162618950361	0	lncRNA	2132-1_{1..462}	"transcript_id ""ENST00000513039.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513039.2"" | genecode_v17"	chr5	 38025799	 38026260	+	ENSG00000250003.2	ENST00000513039.2	CTD-2116N24.1	CTD-2116N24.1-001	NA	NA	NA	inter
CUST_4398_PI429285431	6.323425	P	6.5702853	P	0.842728429188734	0	lncRNA	4348-1_{1..428}	"transcript_id ""ENST00000547554.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547554.1"" | genecode_v17"	chr12	104564173	104564600	+	ENSG00000257193.1	ENST00000547554.1	RP11-818F20.4	RP11-818F20.4-001	NA	NA	NA	inter
CUST_4889_PI429285431	1.9479977	A	1.488911	A	1.37467130514482	0	lncRNA	4831-1_{1..431}	"transcript_id ""ENST00000602790.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602790.1"" | genecode_v17"	chr14	 74938633	 74939063	-	ENSG00000270000.1	ENST00000602790.1	RP3-449M8.9	RP3-449M8.9-001	NPC2	NA	chr14:74946643-74949063	inter
CUST_4746_PI429285431	2.3851504	A	2.9037898	A	0.698029832028441	0	lncRNA	4690-1_{1..529}	"transcript_id ""ENST00000546412.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546412.1"" | genecode_v17"	chr14	 26305064	 26305592	-	ENSG00000257986.1	ENST00000546412.1	RP11-314P15.2	RP11-314P15.2-001	NA	NA	NA	inter
CUST_45536_PI429285431	1.329931	A	2.2569995	A	0.525925917740508	0	lncRNA	49941-2_{3001..3650}	"gi|223468642|ref|NR_026795.1| Homo sapiens long intergenic non-protein coding RNA 202 (LINC00202), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223468642|ref|NR_026795.1| Homo sapiens long intergenic non-protein coding RNA 202 (LINC00202), non-coding RNA"	Chr10	 27223135	 27223784	-	387644	NR_026795.1	NA	NA	NA	NA	NA	inter
CUST_48416_PI429285431	2.283649	A	2.6831005	A	0.758146469106362	0	lncRNA	52268-1_{1..444}	hg19_lincRNAsTranscripts_TCONS_l2_00000570 range=chr1:147554564-147561698 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000570 range=chr1:147554564-147561698 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	147554564	147555007	+	NA	NA	NA	NA	NBPF24	NA	chr1:147552869-147571698	inter
CUST_51472_PI429285431	1.0674765	A	0.961404	A	1.07629421062137	0	lncRNA	55047-1_{1..1432}	hg19_lincRNAsTranscripts_TCONS_l2_00009698 range=chr16:33573557-33582964 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009698 range=chr16:33573557-33582964 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 33573557	 33574988	+	NA	NA	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-23.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00"	NA	inter
CUST_29808_PI429285431	4.352561	P	4.443976	P	0.938601713989286	0	lncRNA	31571-1_{1..640}	n333523|BC039402|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000095669|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000095669|0.5192000|-0.1885484	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n333523|BC039402|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000095669|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000095669|0.5192000|-0.1885484	chr19	 17555619	 17556258	-	NA	NA	NA	NA	TMEM221	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70chr19:17546318-17559376"	NA	inner
CUST_9055_PI429285431	3.6781883	P	4.6631675	P	0.505233007368232	0	lncRNA	10579-1_{1..1743}	lnc-MTMR9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTMR9-1:1	chr8	 10983268	 10985010	+	lnc-MTMR9-1	lnc-MTMR9-1:1	ENSG00000247665	ENST00000500944	XKR6	NA	chr8:10973268-10993574	inner
CUST_14345_PI429285431	0.90036595	A	0.91177684	A	0.992121770975621	0	lncRNA	16003-1_{1..2224}	lnc-C9orf123-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf123-1:1	chr9	  7788675	  7790898	-	lnc-C9orf123-1	lnc-C9orf123-1:1	XLOC_007641	linc-GLDC-1	C9orf123	NA	chr9:7796490-7798763	inter
CUST_5787_PI429285431	4.346007	P	4.3169513	P	1.02034405223519	0	lncRNA	5709-1_{1..254}	"transcript_id ""ENST00000582507.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582507.1"" | genecode_v17"	chr17	 22176022	 22176275	-	ENSG00000264262.1	ENST00000582507.1	RP11-285M22.3	RP11-285M22.3-001	NA	NA	NA	inter
CUST_3289_PI429285431	1.432484	A	1.8031296	A	0.773436309802867	0	lncRNA	3267-1_{1..501}	"transcript_id ""ENST00000577765.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577765.1"" | genecode_v17"	chr8	123712508	123713008	-	ENSG00000263443.1	ENST00000577765.1	RP11-973F15.2	RP11-973F15.2-001	NA	NA	NA	inter
CUST_40794_PI429285431	1.2048166	A	1.010386	A	1.14427245229668	0	lncRNA	41503-2_{3001..6000}	n410553|NR_037771|lncRNA|Homosapiens||RefGeneNoncode|NR_037771||11.3096000|-0.3242510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410553|NR_037771|lncRNA|Homosapiens||RefGeneNoncode|NR_037771||11.3096000|-0.3242510	chr10	121655084	121658083	+	NA	NA	NA	NA	SEC23IP	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80chr10:121652085-121704170"	NA	inter
CUST_37120_PI429285431	2.309826	A	2.9987853	A	0.620301147982526	0	lncRNA	38243-1_{1..544}	n345561|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1110|NULL|-1.3111000|-0.5353262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345561|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1110|NULL|-1.3111000|-0.5353262	chr2	188176062	188176605	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28235_PI429285431	0.9182333	A	0.9236031	A	0.9962848565555	0	lncRNA	29870-1_{1..339}	n325526|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000134072|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000134072|-1.1315600|-0.3358686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325526|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000134072|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000134072|-1.1315600|-0.3358686	chr18	 59898515	 59898853	-	NA	NA	NA	NA	KIAA1468	NA	chr18:59888515-59926824	inner
CUST_8200_PI429285431	8.697254	P	9.127527	P	0.742121341013825	0	lncRNA	9797-1_{1..3000}	lnc-RHBG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RHBG-1:1	chr1	156359954	156362953	+	lnc-RHBG-1	lnc-RHBG-1:1	ENSG00000237390	XLOC_000423	C1orf61	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20chr1:156374055-156375401"	NA	inter
LNCA_21_P0011899	4.877187	P	4.5523705	P	1.25250511922529	0	lncRNA	TCONS_l2_00014406	NA	NA	NA	NA	XLOC_l2_007876	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007876), lincRNA [TCONS_l2_00014406]"	chr2:7199849-7199790	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_l2_00014406	TCONS_l2_00014406	chr2	  7199790	  7199849	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20417_PI429285431	0.9245678	A	1.3312441	A	0.754359276261647	0	lncRNA	22059-1_{1..1777}	lnc-C4orf33-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C4orf33-1:1	chr4	130876407	130878183	+	lnc-C4orf33-1	lnc-C4orf33-1:1	ENSG00000249618.1	RP11-422J15.1	NA	NA	NA	inter
CUST_17939_PI429285431	0.92041916	A	0.9074321	A	1.00904258337371	0	lncRNA	19671-1_{1..429}	lnc-OR4C12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR4C12-1:1	chr11	 50232840	 50233268	-	lnc-OR4C12-1	lnc-OR4C12-1:1	XLOC_009440	linc-OR4C12-2	NA	NA	NA	inter
CUST_24959_PI429285431	0.9093928	A	0.9016764	A	1.00536293020574	0	lncRNA	26497-1_{1..428}	lnc-TDRD3-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-TDRD3-4:2	chr13	 60618330	 60618757	+	lnc-TDRD3-4	lnc-TDRD3-4:2	ENSG00000227528.1	DIAPH3-AS1	DIAPH3	"hg19_refFlat_DIAPH3:range=chr13:60240718-607379005'pad=0,hg19_refFlat_DIAPH3:range=chr13:60240718-607379005'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_DIAPH3:range=chr13:60348303-607379005'pad=0,hg19_refFlat_DIAPH3:range=chr13:60348303-607379005'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00chr13:60608330-60628491"	NA	inner
CUST_31836_PI429285431	4.768655	P	3.345218	P	2.6822375241332	0	lncRNA	33571-1_{1..3000}	n338383|AK094186|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|779|NULL|-1.1828100|-0.2766756	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338383|AK094186|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|779|NULL|-1.1828100|-0.2766756	chr14	 73687120	 73690119	+	NA	NA	NA	NA	PSEN1	NA	chr14:73677120-73690399	inner
LNCA_21_P0012818	1.0017478	A	0.929476	A	1.05137096599071	0	lncRNA	ENST00000502952	NA	NA	NA	NA	XLOC_l2_011413	NA	ENST00000502952	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011413), lincRNA [TCONS_l2_00022094]"	chr4:188478915-188477068	hs|4q35.2	Agilent_HUMAN_G3V2	ENST00000502952	ENST00000502952	chr4	188477068	188478915	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42979_PI429285431	5.43412	P	5.738057	P	0.810038845856674	0	lncRNA	46129-1_{1..135}	ENST00000516287 ncrna:snoRNA chromosome:GRCh37:20:4849630:4849764:1 gene:ENSG00000252096 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516287 ncrna:snoRNA chromosome:GRCh37:20:4849630:4849764:1 gene:ENSG00000252096 gene_biotype:snoRNA transcript_biotype:snoRNA	chr20	  4849630	  4849764	+	ENSG00000252096	ENST00000516287	NA	NA	SLC23A2	NA	chr20:4839630-4859764	inner
CUST_18700_PI429285431	0.9255691	A	1.1042054	A	0.883537761183221	0	lncRNA	20398-1_{1..3000}	lnc-TCL1B-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCL1B-1:10	chr14	 96145409	 96148408	+	lnc-TCL1B-1	lnc-TCL1B-1:10	ENSG00000187621	TCL6	TCL1B	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90chr14:96152754-96156170"	NA	inter
LNCA_21_P0014222	1.3549403	A	0.9286843	A	1.34374184575055	0	lncRNA	XR_108911	XR_108911	XR_108911	NA	Hs.586401	LOC100505501	uncharacterized LOC100505501	NA	THC2495082	NA	"PREDICTED: Homo sapiens hypothetical LOC100505501, transcript variant 2 (LOC100505501), miscRNA [XR_108911]"	chr8:60033718-60033777	hs|8q12.1	Agilent_HUMAN_G3V2	XR_108911	XR_108911	chr8	 60033718	 60033777	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13151_PI429285431	0.94371235	A	0.918968	A	1.01729940754472	0	lncRNA	14778-1_{1..227}	lnc-RAB40B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB40B-1:3	chr17	 80673443	 80673669	-	lnc-RAB40B-1	lnc-RAB40B-1:3	XLOC_012596	linc-RAB40B	FN3KRP	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60chr17:80674582-80683512"	NA	inter
CUST_36898_PI429285431	4.899699	P	5.0534143	P	0.898932503552151	0	lncRNA	38058-1_{1..397}	n345371|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_920|NULL|-1.3050600|-0.1475650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345371|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_920|NULL|-1.3050600|-0.1475650	chr19	 12889745	 12890141	+	NA	NA	NA	NA	HOOK2	NA	chr19:12879745-12886434	inter
CUST_76_PI429285431	10.19641	P	9.322382	P	1.83277285968305	0	lncRNA	70-2_{3001..3607}	"transcript_id ""ENST00000448136.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000448136.1"" | genecode_v17"	chr17	 74556860	 74557466	+	ENSG00000163597.9	ENST00000448136.1	SNHG16	SNHG16-001	ST6GALNAC2	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80chr17:74561461-74571430"	NA	inter
CUST_44422_PI429285431	2.5361953	A	2.8795753	A	0.788192540006496	0	lncRNA	49035-1_{1..2241}	"gi|211938426|ref|NR_024365.1| Homo sapiens uncharacterized LOC100192379 (PP12613), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|211938426|ref|NR_024365.1| Homo sapiens uncharacterized LOC100192379 (PP12613), non-coding RNA"	Chr4	122685740	122687980	+	100192379	NR_024365.1	NA	NA	NA	NA	NA	inter
CUST_24993_PI429285431	3.8844485	P	4.2546477	P	0.773675664191739	0	lncRNA	26533-1_{1..350}	lnc-KCTD6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCTD6-2:1	chr3	 58559918	 58560267	+	lnc-KCTD6-2	lnc-KCTD6-2:1	ENSG00000243384.1	RP11-475O23.2	FAM107A	NA	chr3:58549918-58563491	inner
CUST_43738_PI429285431	0.9097181	A	1.1246119	A	0.861609582380891	0	lncRNA	48480-3_{6001..8593}	"gi|282395054|ref|NR_033184.1| Homo sapiens zinc finger protein 678 (ZNF678), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|282395054|ref|NR_033184.1| Homo sapiens zinc finger protein 678 (ZNF678), transcript variant 2, non-coding RNA"	Chr1	227757220	227759812	+	339500	NR_033184.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004975	0.99084795	A	0.9255691	A	1.04628715091101	0	lncRNA	TCONS_00012024	NA	NA	NA	NA	XLOC_005552	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005552), lincRNA [TCONS_00012024]"	chr6:169563330-169563389	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012024	TCONS_00012024	chr6	169563330	169563389	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38664_PI429285431	7.028785	P	6.8133035	P	1.16109136439383	0	lncRNA	39665-1_{1..2493}	n383944|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ybr.1||5.0582300|-0.1057248	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383944|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ybr.1||5.0582300|-0.1057248	chr20	 60513179	 60515671	+	NA	NA	NA	NA	CDH4	NA	chr20:60503179-60512299	inner
CUST_4281_PI429285431	2.7612855	A	2.5517952	A	1.15627960148331	0	lncRNA	4237-1_{1..535}	"transcript_id ""ENST00000552996.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552996.1"" | genecode_v17"	chr12	 63398118	 63398652	-	ENSG00000257235.1	ENST00000552996.1	RP11-848D3.5	RP11-848D3.5-001	NA	"hg19_refFlat_LDHAL6B:range=chr15:59499140-595002855'pad=0,hg19_refFlat_LDHAL6B:range=chr15:59499140-595002855'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40"	NA	inter
CUST_10426_PI429285431	1.844923	A	1.7859979	A	1.04168934650623	0	lncRNA	11954-1_{1..360}	lnc-FANCL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FANCL-2:1	chr2	 57542599	 57542958	-	lnc-FANCL-2	lnc-FANCL-2:1	XLOC_002102	linc-EFEMP1-4	NA	NA	NA	inter
CUST_49497_PI429285431	5.959173	P	5.559585	P	1.31913114393987	0	lncRNA	53287-3_{6001..8815}	hg19_lincRNAsTranscripts_TCONS_l2_00024057 range=chr6:16153166-16164118 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024057 range=chr6:16153166-16164118 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 16159166	 16161980	+	NA	NA	NA	NA	GMPR	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00chr6:16161165-16174118"	NA	inter
CUST_28699_PI429285431	0.92662585	A	0.9135327	A	1.00911678704165	0	lncRNA	30398-1_{1..703}	n326087|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046559|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046559|-0.6793000|-0.2233532	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326087|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046559|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046559|-0.6793000|-0.2233532	chr10	  5626953	  5627655	-	NA	NA	NA	NA	ASB13	NA	chr10:5680820-5688087	inter
CUST_51507_PI429285431	6.274618	P	6.6472106	P	0.772393216998574	0	lncRNA	55083-1_{1..1939}	hg19_lincRNAsTranscripts_TCONS_l2_00010365 range=chr16:89262175-89268059 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010365 range=chr16:89262175-89268059 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 89262175	 89264113	-	NA	NA	NA	NA	CDH15	NA	chr16:89252175-89261900	inner
CUST_42656_PI429285431	5.609764	P	5.849672	P	0.846799310643816	0	lncRNA	45550-1_{1..91}	ENST00000408061 ncrna:snoRNA chromosome:GRCh37:19:51305585:51305675:-1 gene:ENSG00000220988 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408061 ncrna:snoRNA chromosome:GRCh37:19:51305585:51305675:-1 gene:ENSG00000220988 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	 51305585	 51305675	-	ENSG00000220988	ENST00000408061	NA	NA	ACPT	NA	chr19:51295585-51298481	inter
CUST_20434_PI429285431	11.937596	P	12.349288	P	0.751741210631288	0	lncRNA	22078-1_{1..539}	lnc-EIF2C4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF2C4-1:1	chr1	 36208764	 36209302	+	lnc-EIF2C4-1	lnc-EIF2C4-1:1	ENSG00000232335.1	RP11-435D7.3	CLSPN	"hg19_refFlat_CLSPN:range=chr1:36202097-362354715'pad=0,hg19_refFlat_CLSPN:range=chr1:36202097-362354715'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50chr1:36198764-36219177"	NA	inner
CUST_34835_PI429285431	1.2786202	A	1.0272908	A	1.19030343855566	0	lncRNA	36265-1_{1..1254}	n341741|CR541918|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4214|NULL|5.9934600|-0.1451534	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341741|CR541918|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4214|NULL|5.9934600|-0.1451534	chr9	104124712	104125965	-	NA	NA	NA	NA	BAAT	NA	chr9:104118580-104143686	inner
CUST_16662_PI429285431	8.655996	P	8.507022	P	1.10878066117009	0	lncRNA	18364-1_{1..626}	lnc-BLID-1:20	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BLID-1:20	chr11	121934888	121935513	-	lnc-BLID-1	lnc-BLID-1:20	XLOC_009582	linc-TRIM29-3	NA	NA	NA	inter
CUST_20890_PI429285431	0.90741205	A	1.2313521	A	0.798885112769983	0	lncRNA	22522-1_{1..3000}	lnc-ZCCHC17-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZCCHC17-4:1	chr1	 31199090	 31202089	+	lnc-ZCCHC17-4	lnc-ZCCHC17-4:1	ENSG00000186056.4	RP5-1166H10.2	MATN1	"hg19_refFlat_MATN1:range=chr1:31186429-311963985'pad=0,hg19_refFlat_MATN1:range=chr1:31186429-311963985'pad=0 3'pad=0 strand=- repeatMasking=none,-102.10chr1:31189090-31196432"	NA	inter
CUST_18608_PI429285431	3.8618646	P	3.6997406	P	1.11893326949748	0	lncRNA	20315-1_{1..336}	lnc-ARHGEF35-1:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARHGEF35-1:16	chr7	144040280	144040615	-	lnc-ARHGEF35-1	lnc-ARHGEF35-1:16	ENSG00000244479	RP4-798C17.6	NA	NA	NA	inter
CUST_48326_PI429285431	1.2345028	A	0.90065247	A	1.2603726295359	0	lncRNA	52183-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00001143 range=chr1:36522535-36547930 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001143 range=chr1:36522535-36547930 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 36525535	 36528534	-	NA	NA	NA	NA	EIF2C3	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-58.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00chr1:36512535-36522063"	NA	inter
CUST_14567_PI429285431	0.9169111	A	0.90885967	A	1.0055964278236	0	lncRNA	16235-1_{1..3000}	lnc-RABGAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RABGAP1-1:1	chr9	125698623	125701622	+	lnc-RABGAP1-1	lnc-RABGAP1-1:1	XLOC_007556	linc-RABGAP1	RABGAP1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.30chr9:125703288-125712599"	NA	inter
CUST_15539_PI429285431	1.4356704	A	1.0691665	A	1.28922484826747	0	lncRNA	17224-2_{3001..5633}	lnc-C5orf32-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf32-1:4	chr5	139551222	139553854	+	lnc-C5orf32-1	lnc-C5orf32-1:4	XLOC_004577	linc-C5orf32-1	C5orf32	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60chr5:139554653-139558727"	NA	inter
CUST_765_PI429285431	3.0344906	A	3.5478387	A	0.700594661488936	0	lncRNA	756-1_{1..455}	"transcript_id ""ENST00000434509.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434509.1"" | genecode_v17"	chr2	 13677798	 13678252	+	ENSG00000229370.1	ENST00000434509.1	AC092635.1	AC092635.1-001	NA	NA	NA	inter
CUST_14234_PI429285431	0.910687	A	0.8997236	A	1.00762819737828	0	lncRNA	15890-2_{3001..3942}	lnc-PCM1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCM1-4:4	chr8	 17680867	 17681808	+	lnc-PCM1-4	lnc-PCM1-4:4	XLOC_006726	linc-PCM1	NA	NA	NA	inter
LNCA_21_P0003688	0.9312218	A	0.9170609	A	1.00986391879478	0	lncRNA	TCONS_00008353	NA	NA	NA	NA	XLOC_003799	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003799), lincRNA [TCONS_00008353]"	chr4:180227877-180227936	hs|4q34.3	Agilent_HUMAN_G3V2	TCONS_00008353	TCONS_00008353	chr4	180227877	180227936	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27003_PI429285431	0.93007386	A	1.0077589	A	0.947576916981879	0	lncRNA	28531-1_{1..1718}	n324105|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000128845|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000128845|1.6934700|-0.3089939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324105|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000128845|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000128845|1.6934700|-0.3089939	chr9	 41506045	 41507762	+	NA	NA	NA	NA	FAM75A5	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60chr9:41500679-41506925"	NA	inner
CUST_23045_PI429285431	6.5142937	P	6.9034705	P	0.763565169540204	0	lncRNA	24616-1_{1..395}	lnc-POMGNT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POMGNT1-1:1	chr1	 46641900	 46642294	-	lnc-POMGNT1-1	lnc-POMGNT1-1:1	ENSG00000250719.1	RP11-322N21.2	TSPAN1	NA	chr1:46640749-46651634	inner
CUST_1858_PI429285431	11.484098	P	11.13592	P	1.27295198265532	0	lncRNA	1848-1_{1..672}	"transcript_id ""ENST00000602414.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602414.1"" | genecode_v17"	chr4	119199864	119200535	+	ENSG00000269893.1	ENST00000602414.1	SNHG8	SNHG8-001	PRSS12	NA	chr4:119201193-119210978	inter
LNCA_21_P0006848	3.2308738	P	4.3391843	P	0.463836899494522	0	lncRNA	TCONS_00018148	NA	NA	NA	NA	XLOC_008427	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008427), lincRNA [TCONS_00018148]"	chr10:29386664-29386723	hs|10p12.1	Agilent_HUMAN_G3V2	TCONS_00018148	TCONS_00018148	chr10	 29386664	 29386723	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2643_PI429285431	2.7196136	A	2.091056	A	1.54601851824469	0	lncRNA	2630-1_{1..573}	"transcript_id ""ENST00000417932.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417932.1"" | genecode_v17"	chr6	138264216	138264788	-	ENSG00000226004.1	ENST00000417932.1	RP11-10J5.1	RP11-10J5.1-001	NA	NA	NA	inter
CUST_37801_PI429285431	1.6357703	A	1.6838809	A	0.967202179042644	0	lncRNA	38893-1_{1..1593}	n346310|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1860|NULL|-1.2975700|-0.1731829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346310|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1860|NULL|-1.2975700|-0.1731829	chr4	  3923235	  3924827	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011908	0.9277138	A	0.9156563	A	1.0083926445535	0	lncRNA	ENST00000414796	NA	NA	NA	NA	XLOC_l2_007964	NA	ENST00000414796	THC2701671	NA	"BROAD Institute lincRNA (XLOC_l2_007964), lincRNA [TCONS_l2_00014508]"	chr2:35225074-35224082	hs|2p22.3	Agilent_HUMAN_G3V2	ENST00000414796	ENST00000414796	chr2	 35224082	 35225074	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18234_PI429285431	7.473049	P	7.5447574	P	0.951510577849536	0	lncRNA	19968-1_{1..579}	lnc-BRAT1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-BRAT1-1:2	chr7	  2516006	  2516584	-	lnc-BRAT1-1	lnc-BRAT1-1:2	ENSG00000236734	GRIFIN	NA	NA	NA	inter
CUST_33332_PI429285431	0.91865885	A	0.91557497	A	1.00213986898588	0	lncRNA	34913-2_{3001..3813}	n340047|BC041845|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2502|NULL|-1.1662900|-0.3502670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340047|BC041845|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2502|NULL|-1.1662900|-0.3502670	chr10	 68656867	 68657679	-	NA	NA	NA	NA	CTNNA3	NA	chr10:68643867-68781911	inner
CUST_2420_PI429285431	1.0609974	A	0.90015215	A	1.11794192902297	0	lncRNA	2412-1_{1..237}	"transcript_id ""ENST00000523538.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523538.1"" | genecode_v17"	chr5	164665489	164665725	-	ENSG00000254066.1	ENST00000523538.1	CTB-181F24.1	CTB-181F24.1-002	NA	NA	NA	inter
CUST_29071_PI429285431	1.4133046	A	1.4030175	A	1.00715595672455	0	lncRNA	30800-1_{1..339}	n326562|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000100228|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000100228|-1.1891200|-0.5263286	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326562|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000100228|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000100228|-1.1891200|-0.5263286	chr1	 75201585	 75201923	+	NA	NA	NA	NA	TYW3	NA	chr1:75198836-75213390	inter
CUST_33095_PI429285431	1.579943	A	1.9890499	A	0.753089429255482	0	lncRNA	34699-1_{1..3000}	n339785|X58531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2232|NULL|14.7879000|-0.2446200	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339785|X58531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2232|NULL|14.7879000|-0.2446200	chr18	  6958554	  6961553	-	NA	NA	NA	NA	LAMA1	NA	chr18:6948554-7117813	inner
LNCA_21_P0004715	5.013591	P	4.719623	P	1.22600766603134	0	lncRNA	ENST00000438217	NA	NA	NA	NA	XLOC_005566	NA	ENST00000438217	NA	NA	"BROAD Institute lincRNA (XLOC_005566), lincRNA [TCONS_00011427]"	chr6:171037517-171037576	hs|6q27	Agilent_HUMAN_G3V2	ENST00000438217	ENST00000438217	chr6	171037517	171037576	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27400_PI429285431	0.90695333	A	0.9018307	A	1.00355704787429	0	lncRNA	28964-1_{1..577}	n324565|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040034|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040034|-0.2839550|-0.4808565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324565|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040034|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040034|-0.2839550|-0.4808565	chr6	 25150045	 25150621	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47463_PI429285431	5.1769466	P	5.46698	P	0.817883123431671	0	lncRNA	51489-2_{3001..3710}	"gi|310124102|ref|XR_109748.1| PREDICTED: Homo sapiens uncharacterized LOC100286925 (LOC100286925), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310124102|ref|XR_109748.1| PREDICTED: Homo sapiens uncharacterized LOC100286925 (LOC100286925), misc_RNA"	NA	NA	NA	NA	NA	XR_109748.1	NA	NA	NA	"hg19_refFlat_PPM1F:range=chr22:22277465-223004205'pad=0,hg19_refFlat_PPM1F:range=chr22:22277465-223004205'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40"	NA	Unknown
CUST_28929_PI429285431	0.91556656	A	0.92261326	A	0.995127509047792	0	lncRNA	30646-1_{1..453}	n326354|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060554|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060554|-1.0669000|-0.4260404	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326354|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060554|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060554|-1.0669000|-0.4260404	chr1	160275429	160275881	+	NA	NA	NA	NA	COPA	"hg19_refFlat_COPA:range=chr1:160259947-1603129605'pad=0,hg19_refFlat_COPA:range=chr1:160259947-1603129605'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr1:160265429-160285981"	NA	inner
CUST_18048_PI429285431	3.5071502	M	3.5703957	P	0.957108575436363	0	lncRNA	19783-2_{3001..3880}	lnc-RGL4-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGL4-4:4	chr22	 23857168	 23858047	+	lnc-RGL4-4	lnc-RGL4-4:4	XLOC_014172	linc-RGL4-6	NA	NA	NA	inter
CUST_17541_PI429285431	8.259325	P	8.590993	P	0.794617240241566	0	lncRNA	19266-1_{1..886}	lnc-TBC1D22A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBC1D22A-1:1	chr22	 47604255	 47605140	+	lnc-TBC1D22A-1	lnc-TBC1D22A-1:1	XLOC_014272	linc-FAM19A5-8	NA	NA	NA	inter
CUST_25143_PI429285431	1.2757777	A	0.9148669	A	1.28423640383074	0	lncRNA	26681-1_{1..1617}	lnc-CLOCK-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLOCK-1:2	chr4	 56249459	 56251075	-	lnc-CLOCK-1	lnc-CLOCK-1:2	ENSG00000249700.1	RP11-148K14.2	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_SRD5A3:range=chr4:56212504-562362585'pad=0,hg19_refFlat_SRD5A3:range=chr4:56212504-562362585'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40"	NA	inter
CUST_19559_PI429285431	1.93567	A	1.9345983	A	1.0007431218117	0	lncRNA	21215-1_{1..594}	lnc-AC019294.2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC019294.2-1:3	chr15	 76055324	 76055917	+	lnc-AC019294.2-1	lnc-AC019294.2-1:3	ENSG00000260288.1	RP11-24M17.4	NA	NA	NA	inter
CUST_29843_PI429285431	0.923148	A	0.90990126	A	1.00922422381338	0	lncRNA	31606-1_{1..291}	n333737|L06879|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191741|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191741|1.1298100|-0.0199884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333737|L06879|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191741|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191741|1.1298100|-0.0199884	chr14	 22180591	 22180881	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22971_PI429285431	1.3801061	A	1.3957956	A	0.989183787783364	0	lncRNA	24545-1_{1..684}	lnc-FOXB1-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXB1-3:7	chr15	 60839917	 60840600	+	lnc-FOXB1-3	lnc-FOXB1-3:7	ENSG00000245534.2	RP11-219B17.1	RORA	NA	chr15:60829917-60850163	inner
CUST_38523_PI429285431	6.818009	P	7.1357756	P	0.802310954162626	0	lncRNA	39533-1_{1..2864}	n383177|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002hxi.1||2.8024700|-0.1658254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383177|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002hxi.1||2.8024700|-0.1658254	chr17	 39782578	 39785441	-	NA	NA	NA	NA	KRT17	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70chr17:39775692-39780882"	NA	inter
CUST_11833_PI429285431	0.9041244	A	0.9025697	A	1.00107821677984	0	lncRNA	13414-1_{1..403}	lnc-PRR15L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRR15L-1:1	chr17	 46037442	 46037844	-	lnc-PRR15L-1	lnc-PRR15L-1:1	XLOC_012502	linc-PRR15L	PRR15L	NA	chr17:46029333-46035110	inter
CUST_19645_PI429285431	0.9151993	A	0.9159688	A	0.999466765464654	0	lncRNA	21301-1_{1..463}	lnc-RBM34-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RBM34-1:1	chr1	235334103	235334565	-	lnc-RBM34-1	lnc-RBM34-1:1	ENSG00000232686.1	ARID4B-IT1	ARID4B	NA	chr1:235330210-235344206	inner
CUST_45563_PI429285431	7.182194	P	7.4353704	P	0.839047039577262	0	lncRNA	49962-1_{1..1418}	"gi|104294875|ref|NR_003086.1| Homo sapiens hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2 (HSD17B7P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|104294875|ref|NR_003086.1| Homo sapiens hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2 (HSD17B7P2), non-coding RNA"	Chr10	 38645308	 38646725	+	158160	NR_003086.1	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
CUST_10946_PI429285431	0.9196571	A	1.50623	A	0.665922919365715	0	lncRNA	12487-1_{1..329}	lnc-GJA10-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GJA10-7:1	chr6	 93104985	 93105313	+	lnc-GJA10-7	lnc-GJA10-7:1	XLOC_005388	linc-MANEA-6	NA	NA	NA	inter
CUST_35728_PI429285431	2.6316206	A	0.9169629	A	3.28218759697369	0	lncRNA	37144-2_{3001..3720}	n342894|D38163|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5402|NULL|7.2713800|-0.0955758	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342894|D38163|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5402|NULL|7.2713800|-0.0955758	chr6	 70579447	 70580166	+	NA	NA	NA	NA	COL19A1	NA	chr6:70576448-70922157	inner
LNCA_21_P0007232	1.8004836	A	0.92081904	A	1.83994744663668	0	lncRNA	TCONS_00019373	NA	NA	NA	NA	XLOC_009198	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009198), lincRNA [TCONS_00019373]"	chr11:70996119-70997798	hs|11q13.4	Agilent_HUMAN_G3V2	TCONS_00019373	TCONS_00019373	chr11	 70996119	 70997798	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46900_PI429285431	1.9440978	A	2.6731315	A	0.603307866991129	0	lncRNA	51021-1_{1..436}	"gi|310123698|ref|XR_109418.1| PREDICTED: Homo sapiens uncharacterized LOC100506882 (LOC100506882), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123698|ref|XR_109418.1| PREDICTED: Homo sapiens uncharacterized LOC100506882 (LOC100506882), misc_RNA"	Chr17	 58498569	 58499004	-	100506882	XR_109418.2	NA	NA	NA	NA	NA	inter
CUST_29224_PI429285431	1.4070373	A	1.2007943	A	1.15367990849997	0	lncRNA	30974-1_{1..566}	n326748|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006884|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006884|-1.2273500|-0.2878107	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326748|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006884|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006884|-1.2273500|-0.2878107	chr1	   704024	   704589	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30486_PI429285431	10.162096	P	10.5251465	P	0.777518819189859	0	lncRNA	32266-1_{1..336}	n335637|CR605071|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000284266|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000284266|-0.5747510|-0.0348696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335637|CR605071|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000284266|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000284266|-0.5747510|-0.0348696	chrX	 47430990	 47431325	+	NA	NA	NA	NA	SYN1	NA	chrX:47431300-47441326	inner
CUST_24755_PI429285431	4.32111	P	4.5248384	P	0.868303678001163	0	lncRNA	26299-1_{1..725}	lnc-MSH6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MSH6-1:1	chr2	 47984828	 47985552	+	lnc-MSH6-1	lnc-MSH6-1:1	ENSG00000225009.1	AC006509.6	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10"	NA	inter
CUST_47473_PI429285431	4.1616726	P	4.3847814	P	0.856717343496514	0	lncRNA	51496-1_{1..1769}	"gi|258679451|ref|NR_028483.1| Homo sapiens ADORA2A antisense RNA 1 (ADORA2A-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|258679451|ref|NR_028483.1| Homo sapiens ADORA2A antisense RNA 1 (ADORA2A-AS1), transcript variant 2, non-coding RNA"	Chr22	 24834245	 24836013	-	646023	NR_028483.1	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50"	NA	inter
CUST_9650_PI429285431	2.669775	A	3.3566957	P	0.621178283994357	0	lncRNA	11168-1_{1..482}	lnc-ISX-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ISX-2:1	chr22	 34614497	 34614978	+	lnc-ISX-2	lnc-ISX-2:1	XLOC_014217	linc-ISX-2	NA	NA	NA	inter
CUST_14587_PI429285431	3.1663063	P	3.0067205	A	1.11696640923255	0	lncRNA	16254-1_{1..294}	lnc-ENOX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENOX2-1:1	chrX	130192021	130192314	-	lnc-ENOX2-1	lnc-ENOX2-1:1	XLOC_008236	linc-ENOX2	ARHGAP36	NA	chrX:130192216-130202120	inter
CUST_48322_PI429285431	15.087196	P	15.074816	P	1.00861808580734	0	lncRNA	52180-1_{1..492}	hg19_lincRNAsTranscripts_TCONS_l2_00000181 range=chr1:27974930-27976234 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000181 range=chr1:27974930-27976234 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 27974930	 27975421	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21693_PI429285431	5.8891535	P	6.053202	P	0.892516966656111	0	lncRNA	23304-1_{1..347}	lnc-TMCO1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMCO1-1:1	chr1	165869402	165869748	-	lnc-TMCO1-1	lnc-TMCO1-1:1	ENSG00000236364.1	RP11-525G13.2	UCK2	NA	chr1:165859402-165879592	inner
CUST_6127_PI429285431	0.9138552	A	0.92155606	A	0.994676391500289	0	lncRNA	6053-1_{1..900}	"transcript_id ""ENST00000578367.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000578367.1"" | genecode_v17"	chr18	 24002959	 24003858	+	ENSG00000263862.1	ENST00000578367.1	RP11-107K17.1	RP11-107K17.1-001	NA	NA	NA	inter
CUST_43927_PI429285431	1.8587699	A	2.195365	A	0.791908087882679	0	lncRNA	48638-1_{1..1279}	"gi|310118994|ref|XR_109936.1| PREDICTED: Homo sapiens hCG1732469 (LOC729164), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118994|ref|XR_109936.1| PREDICTED: Homo sapiens hCG1732469 (LOC729164), misc_RNA"	Chr2	109960216	109961494	-	729164	XR_109936.2	NA	NA	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00"	NA	inter
CUST_6451_PI429285431	1.5762758	A	2.0598316	A	0.715212670387612	0	lncRNA	6392-1_{1..549}	"transcript_id ""ENST00000590021.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590021.1"" | genecode_v17"	chr19	 32456548	 32457096	-	ENSG00000267684.1	ENST00000590021.1	CTC-360P9.2	CTC-360P9.2-001	NA	NA	NA	inter
CUST_10415_PI429285431	0.9888284	A	0.99835724	A	0.993416875753209	0	lncRNA	11942-1_{1..251}	lnc-TRMT112-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRMT112-3:2	chr11	 64179632	 64179882	-	lnc-TRMT112-3	lnc-TRMT112-3:2	XLOC_009464	linc-TRMT112-3	NA	NA	NA	inter
CUST_3908_PI429285431	0.9095218	A	0.9045803	A	1.00343105944809	0	lncRNA	3877-1_{1..564}	"transcript_id ""ENST00000527135.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527135.1"" | genecode_v17"	chr11	 34592423	 34592986	+	ENSG00000255427.1	ENST00000527135.1	RP11-350D17.2	RP11-350D17.2-001	NA	NA	NA	inter
CUST_2383_PI429285431	14.736757	P	14.889844	P	0.899324077848941	0	lncRNA	2376-1_{1..553}	"transcript_id ""ENST00000506892.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506892.1"" | genecode_v17"	chr5	139152113	139152665	-	ENSG00000251387.1	ENST00000506892.1	CTB-35F21.3	CTB-35F21.3-001	NA	NA	NA	inter
CUST_12211_PI429285431	0.90585184	A	0.9044622	A	1.00096368909822	0	lncRNA	13813-1_{1..847}	lnc-RNF219-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RNF219-1:1	chr13	 79398879	 79399725	-	lnc-RNF219-1	lnc-RNF219-1:1	XLOC_010664	linc-RNF219-1	NA	NA	NA	inter
CUST_26131_PI429285431	12.042252	P	11.837432	P	1.1525425391378	0	lncRNA	27642-1_{1..287}	lnc-C17orf63-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf63-1:1	chr17	 27076831	 27077117	-	lnc-C17orf63-1	lnc-C17orf63-1:1	ENSG00000265840.1	AC010761.10	C17orf63	NA	chr17:27082996-27087097	inner
CUST_28512_PI429285431	1.0604517	A	0.9707027	A	1.0641850194982	0	lncRNA	30181-1_{1..346}	n325857|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051004|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051004|-1.0610800|-0.0649879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325857|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051004|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051004|-1.0610800|-0.0649879	chr10	130004535	130004880	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20444_PI429285431	0.9048757	A	0.90757245	A	0.998132501290584	0	lncRNA	22088-1_{1..457}	lnc-PLCH1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLCH1-2:1	chr3	154900861	154901317	-	lnc-PLCH1-2	lnc-PLCH1-2:1	ENSG00000240666.1	MME-AS1	MME	NA	chr3:154890861-154901518	inner
CUST_6101_PI429285431	4.0360937	P	4.246088	P	0.864540647048416	0	lncRNA	6027-1_{1..1783}	"transcript_id ""ENST00000580967.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580967.1"" | genecode_v17"	chr18	 14971496	 14973278	+	ENSG00000266554.1	ENST00000580967.1	RP11-527H14.2	RP11-527H14.2-002	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.01;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00"	NA	inter
CUST_23481_PI429285431	4.9814267	P	3.8591535	P	2.17689707854389	0	lncRNA	25048-1_{1..2918}	lnc-LIMS3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIMS3.1-1:1	chr2	110725647	110728564	+	lnc-LIMS3.1-1	lnc-LIMS3.1-1:1	ENSG00000186148.6	AC013271.3	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20"	NA	inter
CUST_44868_PI429285431	2.5860567	A	2.389248	A	1.14616019589216	0	lncRNA	49392-1_{1..550}	"gi|410170503|ref|XR_158813.2| PREDICTED: Homo sapiens uncharacterized LOC100996298 (LOC100996298), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170503|ref|XR_158813.2| PREDICTED: Homo sapiens uncharacterized LOC100996298 (LOC100996298), misc_RNA"	NA	NA	NA	NA	NA	XR_158813.2	NA	NA	NA	NA	NA	Unknown
CUST_18229_PI429285431	0.9246465	A	0.9285268	A	0.997313994779841	0	lncRNA	19964-1_{1..781}	lnc-C2orf49-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C2orf49-2:1	chr2	105992325	105993105	+	lnc-C2orf49-2	lnc-C2orf49-2:1	ENSG00000243840	AC108058.1	FHL2	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-61.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50chr2:105982325-106002540"	NA	inner
CUST_45348_PI429285431	4.059368	P	4.251519	P	0.875299711459127	0	lncRNA	49785-1_{1..564}	"gi|219555685|ref|NR_026558.1| Homo sapiens aquaporin 7 pseudogene 3 (AQP7P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|219555685|ref|NR_026558.1| Homo sapiens aquaporin 7 pseudogene 3 (AQP7P3), non-coding RNA"	Chr9	 42858152	 42858715	+	441432	NR_026558.1	NA	NA	NA	NA	NA	inter
CUST_4027_PI429285431	1.027099	A	2.1040328	A	0.474035233808776	0	lncRNA	3988-1_{1..585}	"transcript_id ""ENST00000532605.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532605.1"" | genecode_v17"	chr11	 80032664	 80033248	-	ENSG00000254434.1	ENST00000532605.1	CTD-2555I5.1	CTD-2555I5.1-001	NA	NA	NA	inter
CUST_47534_PI429285431	4.7415733	P	4.9113693	P	0.888968374207862	0	lncRNA	51545-1_{1..3000}	"gi|224450999|ref|NR_027033.1| Homo sapiens MIRLET7B host gene (non-protein coding) (MIRLET7BHG), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224450999|ref|NR_027033.1| Homo sapiens MIRLET7B host gene (non-protein coding) (MIRLET7BHG), non-coding RNA"	Chr22	 46481877	 46484876	+	400931	NR_027033.1	NA	NA	NA	"hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-55.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	inter
CUST_28198_PI429285431	1.2851678	A	0.9104518	A	1.29658429198316	0	lncRNA	29827-1_{1..718}	n325480|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322600|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322600|-1.0624100|-0.1462939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325480|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322600|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322600|-1.0624100|-0.1462939	chr2	  3114359	  3115076	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012387	5.726553	P	6.0909424	P	0.776797573878019	0	lncRNA	TCONS_l2_00018728	NA	NA	NA	NA	XLOC_l2_009811	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009811), lincRNA [TCONS_l2_00018728]"	chr3:107151962-107152021	hs|3q13.12	Agilent_HUMAN_G3V2	TCONS_l2_00018728	TCONS_l2_00018728	chr3	107151962	107152021	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45790_PI429285431	1.7074847	A	1.8307266	A	0.918122205729509	0	lncRNA	50130-1_{1..1931}	"gi|336594420|ref|NR_038907.1| Homo sapiens uncharacterized LOC100507300 (LOC100507300), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336594420|ref|NR_038907.1| Homo sapiens uncharacterized LOC100507300 (LOC100507300), non-coding RNA"	Chr11	 43930839	 43932769	-	100507300	NR_038907.1	NA	NA	NA	NA	NA	inter
CUST_40565_PI429285431	6.7415295	P	6.6918154	P	1.03505978491197	0	lncRNA	41321-2_{3001..5281}	n409762|NR_034165|lncRNA|Homosapiens||RefGeneNoncode|NR_034165||9.2649000|-0.2137595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409762|NR_034165|lncRNA|Homosapiens||RefGeneNoncode|NR_034165||9.2649000|-0.2137595	chr14	 69661482	 69663762	+	NA	NA	NA	NA	EXD2	NA	chr14:69658194-69710737	inter
CUST_45090_PI429285431	0.92409164	A	0.9173636	A	1.00467441309899	0	lncRNA	49574-1_{1..1637}	"gi|156713455|ref|NR_003715.1| Homo sapiens maltase-glucoamylase (alpha-glucosidase) pseudogene (LOC93432), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|156713455|ref|NR_003715.1| Homo sapiens maltase-glucoamylase (alpha-glucosidase) pseudogene (LOC93432), non-coding RNA"	NW_003571040.1	   253700	   255336	+	93432	NR_003715.1	NA	NA	NA	NA	NA	Unknown
CUST_10754_PI429285431	10.6021	P	11.652287	P	0.482905566899392	0	lncRNA	12290-1_{1..976}	lnc-NFRKB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NFRKB-1:1	chr11	129683863	129684838	-	lnc-NFRKB-1	lnc-NFRKB-1:1	XLOC_009602	linc-ARHGAP32-1	TMEM45B	NA	chr11:129685741-129694687	inter
CUST_11460_PI429285431	0.92128545	A	0.91723543	A	1.0028112039882	0	lncRNA	13025-3_{6001..6847}	lnc-CDH5-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH5-4:1	chr16	 65178004	 65178850	+	lnc-CDH5-4	lnc-CDH5-4:1	XLOC_011753	linc-CDH5-2	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
CUST_18627_PI429285431	3.8470552	P	3.5379448	P	1.23894350238606	0	lncRNA	20332-1_{1..864}	lnc-ARHGEF35-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARHGEF35-1:7	chr7	144052431	144053294	-	lnc-ARHGEF35-1	lnc-ARHGEF35-1:7	ENSG00000244479	RP4-798C17.6	ARHGEF5	NA	chr7:144052489-144062622	inner
CUST_18265_PI429285431	0.90627533	A	1.0174365	A	0.925842586679353	0	lncRNA	19999-1_{1..479}	lnc-RNF144A-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF144A-2:6	chr2	  7590015	  7590493	+	lnc-RNF144A-2	lnc-RNF144A-2:6	ENSG00000229727	AC013460.1	NA	NA	NA	inter
CUST_45323_PI429285431	0.9560701	A	0.9889289	A	0.977481430165138	0	lncRNA	49765-1_{1..900}	"gi|211938435|ref|NR_024369.1| Homo sapiens uncharacterized LOC415056 (LOC415056), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|211938435|ref|NR_024369.1| Homo sapiens uncharacterized LOC415056 (LOC415056), non-coding RNA"	NA	NA	NA	NA	NA	NR_024369.1	NA	NA	NA	NA	NA	Unknown
CUST_49630_PI429285431	2.9608266	A	3.38565	P	0.744929912696238	0	lncRNA	53414-1_{1..214}	hg19_lincRNAsTranscripts_TCONS_l2_00025693 range=chr7:17030022-17061157 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025693 range=chr7:17030022-17061157 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 17030022	 17030235	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20681_PI429285431	6.412647	P	7.2235503	P	0.570024842310853	0	lncRNA	22318-1_{1..3000}	lnc-TTC30B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTC30B-1:1	chr2	178257301	178260300	-	lnc-TTC30B-1	lnc-TTC30B-1:1	ENSG00000213963.2	AC074286.1	AGPS	NA	chr2:178257471-178267419	inter
CUST_3614_PI429285431	3.4932084	P	2.6226048	A	1.82842772469629	0	lncRNA	3584-1_{1..916}	"transcript_id ""ENST00000428165.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000428165.1"" | genecode_v17"	chr10	  8301294	  8302209	-	ENSG00000232170.1	ENST00000428165.1	LINC00708	LINC00708-001	NA	NA	NA	inter
CUST_35430_PI429285431	10.816441	P	10.462838	P	1.27774770493471	0	lncRNA	36837-1_{1..1997}	n342492|D32053|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4986|NULL|12.6732000|-0.2940526	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342492|D32053|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4986|NULL|12.6732000|-0.2940526	chr16	 75661629	 75663625	-	NA	NA	NA	NA	ADAT1	NA	chr16:75651629-75657221	inner
CUST_39485_PI429285431	0.930808	A	0.988982	A	0.960479015889536	0	lncRNA	40432-1_{1..2149}	n387177|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010zoo.1||0.0515160|-0.2757118	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387177|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010zoo.1||0.0515160|-0.2757118	chr2	242198934	242201082	-	NA	NA	NA	NA	HDLBP	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70chr2:242188934-242211083"	NA	inner
CUST_24227_PI429285431	0.9164953	A	0.9193467	A	0.998025512000502	0	lncRNA	25778-1_{1..405}	lnc-IRF1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IRF1-2:2	chr5	131761974	131762378	-	lnc-IRF1-2	lnc-IRF1-2:2	ENSG00000238160.1	AC116366.5	C5orf56	NA	chr5:131751974-131772146	inter
CUST_22157_PI429285431	3.9262	P	4.342071	P	0.749566821137992	0	lncRNA	23759-1_{1..573}	lnc-C2orf42-3:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:16	chr2	 70313256	 70313828	-	lnc-C2orf42-3	lnc-C2orf42-3:16	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
LNCA_21_P0006129	1.0371702	A	1.0394136	A	0.998446202011124	0	lncRNA	TCONS_00015932	NA	NA	NA	NA	XLOC_007303	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007303), lincRNA [TCONS_00015932]"	chr9:24146800-24146859	hs|9p21.3	Agilent_HUMAN_G3V2	TCONS_00015932	TCONS_00015932	chr9	 24146800	 24146859	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5978_PI429285431	5.8515944	P	6.1211357	P	0.829583267076488	0	lncRNA	5906-1_{1..722}	"transcript_id ""ENST00000591422.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591422.1"" | genecode_v17"	chr17	 74953105	 74953826	-	ENSG00000267521.1	ENST00000591422.1	RP11-87G24.6	RP11-87G24.6-001	MGAT5B	NA	chr17:74943105-74946471	inter
CUST_32808_PI429285431	0.92202234	A	0.9119144	A	1.00703089158429	0	lncRNA	34443-1_{1..2706}	n339454|BC043580|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1892|NULL|-0.8700740|-0.4182009	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n339454|BC043580|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1892|NULL|-0.8700740|-0.4182009	chr21	 28731203	 28733908	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32772_PI429285431	2.1894426	A	2.2987504	A	0.927032742248883	0	lncRNA	34407-1_{1..2732}	n339411|BC036229|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1843|NULL|-0.1438390|-0.2205082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339411|BC036229|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1843|NULL|-0.1438390|-0.2205082	chr3	106555657	106558388	-	NA	NA	NA	NA	NA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10"	NA	inter
CUST_14371_PI429285431	3.423358	P	3.6152682	P	0.875445819787983	0	lncRNA	16031-1_{1..493}	lnc-PRDM15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRDM15-1:1	chr21	 43211478	 43211970	-	lnc-PRDM15-1	lnc-PRDM15-1:1	XLOC_014088	linc-RIPK4	PRDM15	NA	chr21:43218385-43221778	inter
CUST_8975_PI429285431	1.7438372	A	1.3825188	A	1.28459928628013	0	lncRNA	10507-1_{1..3000}	lnc-FAM20C-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-FAM20C-3:1	chr7	   153409	   156408	+	lnc-FAM20C-3	lnc-FAM20C-3:1	ENSG00000240859	AC093627.10	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40"	NA	inter
CUST_11175_PI429285431	0.9372493	A	0.9289514	A	1.00576823857849	0	lncRNA	12732-1_{1..491}	lnc-CCDC125-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC125-2:1	chr5	 68455234	 68455724	-	lnc-CCDC125-2	lnc-CCDC125-2:1	XLOC_004863	linc-CD180-12	CCNB1	"hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr5:68462913-68465323"	NA	inter
CUST_32563_PI429285431	0.92665416	A	0.92152596	A	1.00356092244473	0	lncRNA	34227-1_{1..2504}	n339180|AK057076|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1611|NULL|-0.9221630|-0.1518977	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339180|AK057076|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1611|NULL|-0.9221630|-0.1518977	chr16	 30784852	 30787355	-	NA	NA	NA	NA	RNF40	"hg19_refFlat_RNF40:range=chr16:30773867-307854355'pad=0,hg19_refFlat_RNF40:range=chr16:30773867-307854355'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.40chr16:30774852-30787628"	NA	inner
CUST_29703_PI429285431	0.9281164	A	0.9143685	A	1.00957486664271	0	lncRNA	31465-1_{1..575}	n333369|BC002789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086165_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086165_07|-1.1660600|-0.4533361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333369|BC002789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086165_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086165_07|-1.1660600|-0.4533361	chr6	  1932479	  1933053	-	NA	NA	NA	NA	GMDS	NA	chr6:1922479-1944415	inner
LNCA_21_P0012841	2.322342	A	0.9292953	A	2.62632726361585	0	lncRNA	ENST00000510302	NA	NA	NA	NA	XLOC_l2_011694	NA	ENST00000510302	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011694), lincRNA [TCONS_l2_00023492]"	chr5:98913578-98913637	hs|5q21.1	Agilent_HUMAN_G3V2	ENST00000510302	ENST00000510302	chr5	 98913578	 98913637	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13050_PI429285431	0.94317853	A	0.9174627	A	1.01798466591219	0	lncRNA	14675-1_{1..252}	lnc-NDFIP2-11:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDFIP2-11:1	chr13	 81876692	 81876943	+	lnc-NDFIP2-11	lnc-NDFIP2-11:1	XLOC_010456	linc-SLITRK5-7	NA	NA	NA	inter
CUST_19895_PI429285431	5.1299543	P	5.115993	P	1.00972421158752	0	lncRNA	21550-1_{1..568}	lnc-FAM109B-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM109B-1:5	chr22	 42520880	 42521447	+	lnc-FAM109B-1	lnc-FAM109B-1:5	ENSG00000237037.3	RP4-669P10.18	CYP2D6	NA	chr22:42522501-42526883	inter
CUST_15004_PI429285431	4.856101	P	5.110233	P	0.838491462796021	0	lncRNA	16666-1_{1..340}	lnc-KATNA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KATNA1-1:1	chr6	149913750	149914089	-	lnc-KATNA1-1	lnc-KATNA1-1:1	XLOC_005875	linc-PPIL4	KATNA1	NA	chr6:149916009-149923799	inter
CUST_29185_PI429285431	1.0524836	A	0.9216248	A	1.09494530064454	0	lncRNA	30930-1_{1..579}	n326698|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000005696|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000005696|-1.1685000|-0.4606996	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326698|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000005696|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000005696|-1.1685000|-0.4606996	chr1	 14548036	 14548614	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48207_PI429285431	0.98718107	A	1.0446225	A	0.960966850646123	0	lncRNA	52070-1_{1..308}	hg19_lincRNAsTranscripts_TCONS_l2_00000958 range=chr1:112760-168167 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000958 range=chr1:112760-168167 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	   112760	   113067	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41607_PI429285431	1.7213091	A	2.4934728	A	0.585538646827393	0	lncRNA	42965-1_{1..98}	ENST00000390234 ncrna:miRNA chromosome:GRCh37:17:11985216:11985313:1 gene:ENSG00000211589 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390234 ncrna:miRNA chromosome:GRCh37:17:11985216:11985313:1 gene:ENSG00000211589 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 11985216	 11985313	+	ENSG00000211589	ENST00000390234	NA	NA	MAP2K4	NA	chr17:11975216-11995313	inner
CUST_971_PI429285431	0.9217943	A	0.9260275	A	0.9970700700026	0	lncRNA	960-1_{1..3000}	"transcript_id ""ENST00000452354.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000452354.1"" | genecode_v17"	chr2	100824716	100827715	+	ENSG00000232084.1	ENST00000452354.1	AC104782.3	AC104782.3-001	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70"	NA	inter
CUST_10277_PI429285431	1.0349025	A	1.0639799	A	0.980046834818813	0	lncRNA	11802-1_{1..362}	lnc-RBM10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RBM10-1:1	chrX	 46990677	 46991038	+	lnc-RBM10-1	lnc-RBM10-1:1	XLOC_007971	linc-RBM10	NDUFB11	NA	chrX:46992071-47000742	inter
CUST_931_PI429285431	1.9582683	A	4.373263	P	0.187505562494908	0	lncRNA	921-1_{1..725}	"transcript_id ""ENST00000457448.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457448.1"" | genecode_v17"	chr2	 68023186	 68023910	-	ENSG00000237013.1	ENST00000457448.1	AC010987.6	AC010987.6-001	NA	NA	NA	inter
CUST_37729_PI429285431	4.999796	P	5.7348075	P	0.600813235546335	0	lncRNA	38824-3_{6001..6237}	n346231|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1781|NULL|-1.4184500|-0.2005877	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n346231|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1781|NULL|-1.4184500|-0.2005877	chr10	  5642946	  5643182	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50"	NA	inter
CUST_37471_PI429285431	0.92432207	A	0.90579486	A	1.01292489704818	0	lncRNA	38571-1_{1..1189}	n345927|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1476|NULL|-1.6642800|-0.3292174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345927|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1476|NULL|-1.6642800|-0.3292174	chr1	105000978	105002166	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70"	NA	inter
CUST_18782_PI429285431	6.4830556	P	6.542067	P	0.959921675825103	0	lncRNA	20478-1_{1..761}	lnc-ZFP14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ZFP14-1:1	chr19	 36822349	 36823109	-	lnc-ZFP14-1	lnc-ZFP14-1:1	ENSG00000232677	AC092296.1	ZFP14	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20chr19:36825355-36832602"	NA	inter
CUST_26333_PI429285431	0.90842175	A	0.9043576	A	1.00282102573937	0	lncRNA	27840-1_{1..1412}	lnc-UCP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UCP2-1:1	chr11	 73681006	 73682417	-	lnc-UCP2-1	lnc-UCP2-1:1	ENSG00000255847.1	RP11-167N4.2	DNAJB13	"hg19_refFlat_DNAJB13:range=chr11:73662115-736811595'pad=0,hg19_refFlat_DNAJB13:range=chr11:73662115-736811595'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70chr11:73671006-73681332"	NA	inner
CUST_30405_PI429285431	14.894167	P	14.881454	P	1.008850919898	0	lncRNA	32185-1_{1..284}	n335534|BC070230|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264188_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264188_04|1.0376000|-0.1251318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335534|BC070230|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264188_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264188_04|1.0376000|-0.1251318	chr6	 33239853	 33240136	+	NA	NA	NA	NA	RPS18	NA	chr6:33239852-33244281	inner
CUST_32712_PI429285431	2.6447735	A	2.0967674	A	1.46206363028119	0	lncRNA	34355-1_{1..1025}	n339343|CR621874|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1775|NULL|-0.1003410|-0.3230338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339343|CR621874|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1775|NULL|-0.1003410|-0.3230338	chr3	 45791118	 45792142	-	NA	NA	NA	NA	SACM1L	"hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.12;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10chr3:45781118-45786900"	NA	inter
CUST_47780_PI429285431	0.93913555	A	0.91568476	A	1.01638767775593	0	lncRNA	51706-2_{3001..6000}	"gi|385137094|ref|NR_047632.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 62, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137094|ref|NR_047632.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 62, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047632.1	NA	NA	NA	NA	NA	inter
CUST_51265_PI429285431	7.450499	P	6.7462754	P	1.62926762303014	0	lncRNA	54872-1_{1..710}	hg19_lincRNAsTranscripts_TCONS_l2_00008489 range=chr15:28986271-28991383 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008489 range=chr15:28986271-28991383 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28986271	 28986980	+	NA	NA	NA	NA	LOC653720	NA	chr15:28976271-28983530	inter
CUST_3443_PI429285431	10.997375	P	10.7307825	P	1.2029631920604	0	lncRNA	3414-1_{1..2208}	"transcript_id ""ENST00000585776.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000585776.1"" | genecode_v17"	chr9	 84545141	 84547348	-	ENSG00000267559.1	ENST00000585776.1	RP11-383M4.6	RP11-383M4.6-001	FAM75D1	"hg19_refFlat_SPATA31D1:range=chr9:84603734-846101165'pad=0,hg19_refFlat_SPATA31D1:range=chr9:84603734-846101165'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_SPATA31D4:range=chr9:84543429-845478305'pad=0,hg19_refFlat_SPATA31D4:range=chr9:84543429-845478305'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_SPATA31D3:range=chr9:84558501-845629225'pad=0,hg19_refFlat_SPATA31D3:range=chr9:84558501-845629225'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00chr9:84581478-84602004"	NA	inner
CUST_40005_PI429285431	2.747371	A	1.0705506	A	3.19722527650984	0	lncRNA	40869-1_{1..3000}	n407155|NR_026569|lncRNA|Homosapiens||RefGeneNoncode|NR_026569||4.0043800|-0.3618965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407155|NR_026569|lncRNA|Homosapiens||RefGeneNoncode|NR_026569||4.0043800|-0.3618965	chr18	  5289017	  5292016	-	NA	NA	NA	NA	ZFP161	NA	chr18:5289018-5296039	inner
CUST_31409_PI429285431	0.97479415	A	0.92453235	A	1.03545280620212	0	lncRNA	33182-1_{1..3000}	n337874|BC042953|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|257|NULL|-1.0616000|-0.3427013	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337874|BC042953|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|257|NULL|-1.0616000|-0.3427013	chrX	139872023	139875022	+	NA	NA	NA	NA	CDR1	NA	chrX:139865425-139866723	inter
CUST_18532_PI429285431	1.1381122	A	0.94061166	A	1.14670996532262	0	lncRNA	20246-1_{1..846}	lnc-AKR1C2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AKR1C2-4:1	chr10	  4720241	  4721086	-	lnc-AKR1C2-4	lnc-AKR1C2-4:1	ENSG00000231298	RP11-117P22.1	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00"	NA	inter
CUST_13949_PI429285431	0.9102852	A	0.9010671	A	1.00640995642592	0	lncRNA	15596-1_{1..528}	lnc-SGCG-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SGCG-3:2	chr13	 23682639	 23683166	+	lnc-SGCG-3	lnc-SGCG-3:2	XLOC_010306	linc-SGCG-3	NA	NA	NA	inter
CUST_11415_PI429285431	0.911312	A	0.99897987	A	0.941042724704105	0	lncRNA	12981-1_{1..2005}	lnc-SYNDIG1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYNDIG1-4:1	chr20	 24010292	 24012296	+	lnc-SYNDIG1-4	lnc-SYNDIG1-4:1	XLOC_013495	linc-TMEM90B-3	NA	NA	NA	inter
CUST_29110_PI429285431	2.1958034	A	1.9931177	A	1.15083874670681	0	lncRNA	30843-1_{1..683}	n326608|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023021|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023021|-1.2478200|-0.1181464	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326608|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023021|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023021|-1.2478200|-0.1181464	chr1	 54754672	 54755354	-	NA	NA	NA	NA	SSBP3	NA	chr1:54744672-54765520	inner
CUST_26458_PI429285431	2.5344386	A	2.3144746	A	1.16470452288622	0	lncRNA	27966-1_{1..884}	lnc-C2orf42-3:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:12	chr2	 70314110	 70314993	-	lnc-C2orf42-3	lnc-C2orf42-3:12	ENSG00000179818.6	PCBP1-AS1	PCBP1	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50chr2:70314585-70316335"	NA	inter
CUST_35532_PI429285431	7.554616	P	6.867758	P	1.6097738223979	0	lncRNA	36950-2_{3001..3444}	n342655|AK123107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5157|NULL|-0.7043500|-0.2690734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342655|AK123107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5157|NULL|-0.7043500|-0.2690734	chr17	   417736	   418179	-	NA	NA	NA	NA	VPS53	NA	chr17:411908-428180	inner
LNCA_32_P921149	0.93087465	A	0.91688734	A	1.00974241582525	0	lncRNA	XR_132697	XR_132697	XR_132697	100129476	Hs.599645	LOC100129476	uncharacterized LOC100129476	NA	THC2488719	NA	"PREDICTED: Homo sapiens hypothetical LOC100129476 (LOC100129476), miscRNA [XR_132697]"	chr1:7111734-7111675	hs|1p36.31	Agilent_HUMAN_G3V2	XR_132697	XR_132697	chr1	  7111675	  7111734	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26750_PI429285431	3.715598	P	5.0707374	P	0.3908970494227	0	lncRNA	28245-1_{1..436}	n323796|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058638|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058638|0.0626451|-0.3299117	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323796|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058638|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058638|0.0626451|-0.3299117	chrX	145698993	145699428	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45418_PI429285431	0.9070548	A	1.2651831	A	0.780176095417278	0	lncRNA	49842-1_{1..1486}	"gi|349585198|ref|NR_045211.1| Homo sapiens glycoprotein, alpha-galactosyltransferase 1 pseudogene (GGTA1P), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|349585198|ref|NR_045211.1| Homo sapiens glycoprotein, alpha-galactosyltransferase 1 pseudogene (GGTA1P), transcript variant 2, non-coding RNA"	Chr9	124217319	124218804	-	2681	NR_045211.1	NA	NA	NA	NA	NA	inter
CUST_46920_PI429285431	2.9231799	A	2.960255	A	0.974628894919598	0	lncRNA	51035-1_{1..1236}	"gi|397139672|ref|XR_158924.1| PREDICTED: Homo sapiens uncharacterized LOC100996374 (LOC100996374), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139672|ref|XR_158924.1| PREDICTED: Homo sapiens uncharacterized LOC100996374 (LOC100996374), misc_RNA"	NA	NA	NA	NA	NA	XR_158924.1	NA	NA	NA	NA	NA	Unknown
CUST_48225_PI429285431	2.7122056	A	2.4767475	A	1.17728050060397	0	lncRNA	52088-1_{1..364}	hg19_lincRNAsTranscripts_TCONS_l2_00001494 range=chr1:142814172-142891006 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001494 range=chr1:142814172-142891006 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	142814172	142814535	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22963_PI429285431	5.000632	P	5.2159243	P	0.861371622179257	0	lncRNA	24537-1_{1..643}	lnc-PPP1R14D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP1R14D-1:1	chr15	 41136377	 41137019	-	lnc-PPP1R14D-1	lnc-PPP1R14D-1:1	ENSG00000261183.1	RP11-532F12.5	SPINT1	NA	chr15:41136246-41146585	inner
CUST_40817_PI429285431	4.663025	P	4.645295	P	1.0123653257141	0	lncRNA	41520-2_{3001..4061}	n410584|NR_037846_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037846_7||-1.0119300|-0.2642549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410584|NR_037846_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037846_7||-1.0119300|-0.2642549	chr6	  3220333	  3221393	+	NA	NA	NA	NA	TUBB2B	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90chr6:3224495-3227968"	NA	inner
CUST_28053_PI429285431	1.7197239	A	2.124366	A	0.75542367306057	0	lncRNA	29671-1_{1..461}	n325319|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326187|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326187|-1.1271600|-0.2224223	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325319|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326187|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326187|-1.1271600|-0.2224223	chr2	 45011819	 45012279	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25521_PI429285431	0.9147908	A	0.91384935	A	1.00065277637896	0	lncRNA	27052-1_{1..265}	lnc-OCIAD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OCIAD2-1:1	chr4	 48862174	 48862438	-	lnc-OCIAD2-1	lnc-OCIAD2-1:1	ENSG00000248256.1	OCIAD1-AS1	OCIAD1	NA	chr4:48852174-48863834	inner
CUST_1809_PI429285431	4.944278	P	5.1454563	P	0.869839844174963	0	lncRNA	1796-1_{1..2080}	"transcript_id ""ENST00000508174.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000508174.1"" | genecode_v17"	chr4	 80413570	 80415649	+	ENSG00000250334.1	ENST00000508174.1	RP11-234K19.2	RP11-234K19.2-001	NA	NA	NA	inter
CUST_23563_PI429285431	4.0537605	P	3.4390016	P	1.53130206789971	0	lncRNA	25130-1_{1..612}	lnc-C12orf43-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C12orf43-1:3	chr12	121417417	121418028	-	lnc-C12orf43-1	lnc-C12orf43-1:3	ENSG00000241388.2	HNF1A-AS1	HNF1A	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80chr12:121416549-121427550"	NA	inner
CUST_2140_PI429285431	0.90402853	A	0.9070914	A	0.997879232307441	0	lncRNA	2131-1_{1..487}	"transcript_id ""ENST00000506429.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506429.1"" | genecode_v17"	chr5	 37953504	 37953990	+	ENSG00000248533.1	ENST00000506429.1	CTD-2130F23.1	CTD-2130F23.1-001	NA	NA	NA	inter
LNCA_21_P0007522	0.92599946	A	0.9152564	A	1.0074743160401	0	lncRNA	TCONS_00020316	NA	NA	NA	NA	XLOC_009649	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009649), lincRNA [TCONS_00020316]"	chr12:9493245-9493304	hs|12p13.31	Agilent_HUMAN_G3V2	TCONS_00020316	TCONS_00020316	chr12	  9493245	  9493304	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24331_PI429285431	1.1004065	A	1.3728836	A	0.827896830146876	0	lncRNA	25884-1_{1..459}	lnc-GALE-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GALE-1:2	chr1	 24098758	 24099216	-	lnc-GALE-1	lnc-GALE-1:2	ENSG00000236810.1	RP5-886K2.3	PITHD1	NA	chr1:24104876-24108887	inter
CUST_29887_PI429285431	1.9086754	A	1.8659463	A	1.03006051731763	0	lncRNA	31650-1_{1..383}	n333943|L48237|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193938|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193938|3.0206600|-0.1332194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333943|L48237|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193938|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193938|3.0206600|-0.1332194	chr14	106330425	106330807	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004420	0.9250531	A	0.951789	A	0.981638746362789	0	lncRNA	TCONS_00010402	NA	NA	NA	NA	XLOC_004924	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004924), lincRNA [TCONS_00010402]"	chr5:90598248-90598189	hs|5q14.3	Agilent_HUMAN_G3V2	TCONS_00010402	TCONS_00010402	chr5	 90598189	 90598248	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21675_PI429285431	1.093967	A	0.9251882	A	1.1241065578754	0	lncRNA	23285-1_{1..561}	lnc-GTDC1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTDC1-5:3	chr2	144238299	144238859	-	lnc-GTDC1-5	lnc-GTDC1-5:3	ENSG00000228655.2	AC096558.1	ARHGAP15	NA	chr2:144228299-144248350	inner
CUST_41580_PI429285431	1.3602911	A	2.0860934	A	0.604660692036998	0	lncRNA	42901-1_{1..68}	ENST00000408108 ncrna:miRNA chromosome:GRCh37:8:41517959:41518026:1 gene:ENSG00000221035 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408108 ncrna:miRNA chromosome:GRCh37:8:41517959:41518026:1 gene:ENSG00000221035 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 41517959	 41518026	+	ENSG00000221035	ENST00000408108	NA	NA	ANK1	NA	chr8:41510744-41528026	inner
CUST_5721_PI429285431	0.9160704	A	0.914129	A	1.00134658176447	0	lncRNA	5645-1_{1..557}	"transcript_id ""ENST00000578788.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578788.1"" | genecode_v17"	chr17	  8870840	  8871396	+	ENSG00000265975.1	ENST00000578788.1	CTB-41I6.2	CTB-41I6.2-001	PIK3R5	NA	chr17:8860840-8869024	inter
CUST_8376_PI429285431	8.965157	P	9.154287	P	0.877134507341304	0	lncRNA	9954-1_{1..2823}	lnc-C9orf69-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C9orf69-1:1	chr9	139010331	139013153	-	lnc-C9orf69-1	lnc-C9orf69-1:1	ENSG00000238227	C9orf69	C9orf69	NA	chr9:139006427-139010731	inner
CUST_2878_PI429285431	11.572282	P	11.404296	P	1.12348900057348	0	lncRNA	2859-1_{1..782}	"transcript_id ""ENST00000439105.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439105.1"" | genecode_v17"	chr7	 84568665	 84569446	-	ENSG00000232019.1	ENST00000439105.1	AC074183.4	AC074183.4-001	NA	NA	NA	inter
CUST_11013_PI429285431	0.9135917	A	0.9059709	A	1.00529631216864	0	lncRNA	12558-1_{1..1278}	lnc-CLEC19A.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLEC19A.1-2:1	chr16	 19348302	 19349579	+	lnc-CLEC19A.1-2	lnc-CLEC19A.1-2:1	XLOC_011659	linc-TMC5	NA	NA	NA	inter
CUST_14231_PI429285431	0.8910312	A	1.4394369	A	0.683775340578195	0	lncRNA	15889-1_{1..3000}	lnc-AL078585.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AL078585.1-2:1	chr6	163767411	163770410	-	lnc-AL078585.1-2	lnc-AL078585.1-2:1	XLOC_005909	linc-PARK2-6	NA	NA	NA	inter
CUST_13802_PI429285431	8.370379	P	7.9549246	P	1.33371868708843	0	lncRNA	15444-1_{1..1207}	lnc-SAFB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SAFB-1:1	chr19	  5581205	  5582411	+	lnc-SAFB-1	lnc-SAFB-1:1	XLOC_012925	linc-SAFB-2	SAFB2	NA	chr19:5587010-5591226	inter
CUST_18934_PI429285431	0.90146255	A	0.90340424	A	0.998655028337179	0	lncRNA	20626-1_{1..689}	lnc-ELAVL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ELAVL2-2:1	chr9	 23897983	 23898671	-	lnc-ELAVL2-2	lnc-ELAVL2-2:1	ENSG00000237414	RP11-321L2.2	NA	NA	NA	inter
CUST_6757_PI429285431	0.9183914	A	0.9117278	A	1.00462953890764	0	lncRNA	6705-1_{1..504}	"transcript_id ""ENST00000427446.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427446.1"" | genecode_v17"	chr21	 14918354	 14918857	+	ENSG00000228159.1	ENST00000427446.1	AP001465.5	AP001465.5-001	POTED	NA	chr21:14908354-14940782	inter
CUST_51776_PI429285431	6.2864347	P	6.825302	P	0.688311109173782	0	lncRNA	55327-1_{1..589}	hg19_lincRNAsTranscripts_TCONS_l2_00012276 range=chr19:7982685-7983972 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012276 range=chr19:7982685-7983972 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	  7982685	  7983273	+	NA	NA	NA	NA	TIMM44	NA	chr19:7991603-7993972	inner
CUST_36975_PI429285431	7.1845074	P	6.7777243	P	1.32572643079975	0	lncRNA	38121-2_{3001..3943}	n345437|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_986|NULL|-1.3016700|-0.4090405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n345437|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_986|NULL|-1.3016700|-0.4090405	chr1	 35644980	 35645922	-	NA	NA	NA	NA	SFPQ	NA	chr1:35649201-35657739	inter
CUST_4097_PI429285431	8.752958	P	8.128216	P	1.54193505346305	0	lncRNA	4058-1_{1..1359}	"transcript_id ""ENST00000526453.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526453.1"" | genecode_v17"	chr11	118866905	118868263	-	ENSG00000255121.2	ENST00000526453.1	RP11-110I1.12	RP11-110I1.12-001	CCDC84	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10chr11:118868852-118878714"	NA	inter
CUST_13189_PI429285431	4.5214653	P	4.3211703	P	1.14893326303572	0	lncRNA	14816-1_{1..810}	lnc-KLHL18-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL18-1:2	chr3	 47210659	 47211468	+	lnc-KLHL18-1	lnc-KLHL18-1:2	XLOC_002636	linc-KLHL18-3	SETD2	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10chr3:47200659-47205467"	NA	inter
CUST_23120_PI429285431	0.92343545	A	0.9036404	A	1.01381544641546	0	lncRNA	24691-1_{1..444}	lnc-NRIP2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NRIP2-7:1	chr12	  2716587	  2717030	-	lnc-NRIP2-7	lnc-NRIP2-7:1	ENSG00000256769.1	CACNA1C-AS3	CACNA1C	NA	chr12:2706587-2726606	inner
CUST_46558_PI429285431	2.4904602	A	3.1018653	A	0.654558889576608	0	lncRNA	50743-1_{1..355}	"gi|310123400|ref|XR_109228.1| PREDICTED: Homo sapiens uncharacterized LOC100507325 (LOC100507325), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310123400|ref|XR_109228.1| PREDICTED: Homo sapiens uncharacterized LOC100507325 (LOC100507325), misc_RNA"	NA	NA	NA	NA	NA	XR_109228.1	NA	NA	NA	NA	NA	Unknown
CUST_38982_PI429285431	8.61367	P	9.658523	P	0.484694292730462	0	lncRNA	39965-2_{3001..4819}	n385218|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ubq.3||0.8684730|-0.1720164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385218|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ubq.3||0.8684730|-0.1720164	chr7	 74443800	 74445618	+	NA	NA	NA	NA	GATSL1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-62.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90chr7:74430800-74438803"	NA	inter
LNCA_21_P0001026	0.9257015	A	1.6095175	A	0.622516507811758	0	lncRNA	ENST00000425271	NA	NA	NA	NA	XLOC_000451	NA	ENST00000425271	NA	NA	"BROAD Institute lincRNA (XLOC_000451), lincRNA [TCONS_00000328]"	chr1:166304925-166304984	hs|1q24.1	Agilent_HUMAN_G3V2	ENST00000425271	ENST00000425271	chr1	166304925	166304984	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011763	2.1020288	A	2.761187	A	0.633247683719727	0	lncRNA	TCONS_l2_00013242	NA	NA	NA	NA	XLOC_l2_007135	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007135), lincRNA [TCONS_l2_00013242]"	chr19:56123711-56123652	hs|19q13.42	Agilent_HUMAN_G3V2	TCONS_l2_00013242	TCONS_l2_00013242	chr19	 56123652	 56123711	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012279	7.088312	P	7.341828	P	0.838849557203827	0	lncRNA	XR_132906	XR_132906	XR_132906	NA	NA	LOC100289038	von Willebrand factor-like	NA	NA	NA	"PREDICTED: Homo sapiens von Willebrand factor-like (LOC100289038), miscRNA [XR_132906]"	chrUn_gl000238:20357-20513	NA	Agilent_HUMAN_G3V2	XR_132906	XR_132906	chrUn_gl000238	    20357	    20513	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20342_PI429285431	0.9102702	A	0.90787107	A	1.00166433366375	0	lncRNA	21983-1_{1..473}	lnc-ERN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ERN2-1:1	chr16	 23699414	 23699886	-	lnc-ERN2-1	lnc-ERN2-1:1	ENSG00000261266.1	CTD-2196E14.5	ERN2	NA	chr16:23701625-23709665	inner
CUST_7973_PI429285431	2.20405	A	3.1837654	A	0.507079761495207	0	lncRNA	9585-1_{1..2025}	lnc-MYBBP1A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYBBP1A-2:1	chr17	  4389419	  4391443	-	lnc-MYBBP1A-2	lnc-MYBBP1A-2:1	ENSG00000247652	ENST00000500040	SPNS3	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_SPNS3:range=chr17:4337263-43911895'pad=0,hg19_refFlat_SPNS3:range=chr17:4337263-43911895'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60chr17:4379419-4391499"	NA	inner
CUST_7932_PI429285431	8.651277	P	8.367498	P	1.21737951945573	0	lncRNA	9544-1_{1..582}	lnc-MAPK15-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MAPK15-1:2	chr8	144823922	144824503	+	lnc-MAPK15-1	lnc-MAPK15-1:2	ENSG00000203499	RP11-429J17.6	FAM83H	NA	chr8:144813922-144815914	inter
CUST_6553_PI429285431	2.2640836	A	1.5236137	A	1.67071992019715	0	lncRNA	6501-1_{1..770}	"transcript_id ""ENST00000594305.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594305.1"" | genecode_v17"	chr19	 49467247	 49468016	+	ENSG00000267898.1	ENST00000594305.1	CTD-2639E6.9	CTD-2639E6.9-002	GYS1	NA	chr19:49471382-49478286	inter
CUST_35245_PI429285431	8.289758	P	7.878106	P	1.33020813593204	0	lncRNA	36646-1_{1..1544}	n342244|D83197|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4734|NULL|2.1408800|-0.2926109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342244|D83197|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4734|NULL|2.1408800|-0.2926109	chrX	107327438	107328981	-	NA	NA	NA	NA	ATG4A	NA	chrX:107334899-107344848	inner
CUST_31398_PI429285431	0.9227592	A	1.4171821	A	0.709845570360492	0	lncRNA	33174-1_{1..1171}	n337864|BC038203|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|247|NULL|-1.1865500|-0.4140442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337864|BC038203|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|247|NULL|-1.1865500|-0.4140442	chrX	134452013	134453183	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13588_PI429285431	4.4486704	P	4.641921	P	0.874632825641229	0	lncRNA	15228-1_{1..224}	lnc-SLITRK5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK5-2:1	chr13	 88261972	 88262195	+	lnc-SLITRK5-2	lnc-SLITRK5-2:1	XLOC_010462	linc-SLITRK5-1	NA	NA	NA	inter
CUST_7687_PI429285431	2.6495347	A	2.3885999	A	1.19825486714845	0	lncRNA	9320-1_{1..733}	lnc-FEZF2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FEZF2-1:6	chr3	 62304466	 62305198	-	lnc-FEZF2-1	lnc-FEZF2-1:6	ENSG00000241472	RP11-204J18.3	C3orf14	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40chr3:62305396-62314567"	NA	inter
CUST_23756_PI429285431	4.6504574	P	5.104138	P	0.73017764234546	0	lncRNA	25319-1_{1..1189}	lnc-IST1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IST1-1:1	chr16	 71963914	 71965102	+	lnc-IST1-1	lnc-IST1-1:1	ENSG00000263320.1	RP11-498D10.6	KIAA0174	"hg19_refFlat_PKD1L3:range=chr16:71963441-720338775'pad=0,hg19_refFlat_PKD1L3:range=chr16:71963441-720338775'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60chr16:71953914-71962906"	NA	inner
CUST_23691_PI429285431	0.91869754	A	1.0615504	A	0.905726353044774	0	lncRNA	25256-1_{1..544}	lnc-PLEKHA3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLEKHA3-2:1	chr2	179510454	179510997	+	lnc-PLEKHA3-2	lnc-PLEKHA3-2:1	ENSG00000234483.1	AC010680.1	TTN	"hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10chr2:179500454-179520650"	NA	inter
CUST_33691_PI429285431	7.618972	P	7.8313813	P	0.863094659444427	0	lncRNA	35252-1_{1..425}	n340467|AF085990|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2928|NULL|-1.3592900|-0.2344034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340467|AF085990|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2928|NULL|-1.3592900|-0.2344034	chr5	 54553251	 54553675	+	NA	NA	NA	NA	DHX29	NA	chr5:54552073-54563660	inner
CUST_51046_PI429285431	3.6136155	P	4.302373	P	0.620387919977441	0	lncRNA	54688-1_{1..1434}	hg19_lincRNAsTranscripts_TCONS_l2_00007064 range=chr13:21876592-21879724 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007064 range=chr13:21876592-21879724 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 21876592	 21878025	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_40504_PI429285431	1.2168859	A	0.91231805	A	1.23504863085685	0	lncRNA	41269-1_{1..2737}	n409467|NR_033852|lncRNA|Homosapiens||RefGeneNoncode|NR_033852||-0.8584850|-0.2140385	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n409467|NR_033852|lncRNA|Homosapiens||RefGeneNoncode|NR_033852||-0.8584850|-0.2140385	chr11	134306375	134309111	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011092	0.9638488	A	0.972777	A	0.993830553018517	0	lncRNA	TCONS_l2_00006131	NA	NA	NA	NA	XLOC_l2_003295	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003295), lincRNA [TCONS_l2_00006131]"	chr12:9718898-9718839	hs|12p13.31	Agilent_HUMAN_G3V2	TCONS_l2_00006131	TCONS_l2_00006131	chr12	  9718839	  9718898	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28846_PI429285431	0.9132603	A	1.0250596	A	0.925433160383521	0	lncRNA	30554-1_{1..473}	n326261|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088022|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088022|-1.2502000|-0.3148944	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326261|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088022|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088022|-1.2502000|-0.3148944	chr1	207387234	207387706	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50164_PI429285431	7.0798836	P	6.8318315	P	1.18760255315214	0	lncRNA	53890-1_{1..913}	hg19_lincRNAsTranscripts_TCONS_l2_00028628 range=chr9:14993295-15019717 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028628 range=chr9:14993295-15019717 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 14993295	 14994207	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3430_PI429285431	0.90880483	A	0.9085703	A	1.00016257702247	0	lncRNA	3401-1_{1..802}	"transcript_id ""ENST00000592778.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592778.1"" | genecode_v17"	chr9	 71013008	 71013809	-	ENSG00000233178.2	ENST00000592778.1	RP11-88I18.2	RP11-88I18.2-003	PGM5	NA	chr9:71003008-71031416	inner
CUST_6043_PI429285431	1.2482864	A	1.8020161	A	0.681256644030238	0	lncRNA	5969-1_{1..505}	"transcript_id ""ENST00000580524.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580524.1"" | genecode_v17"	chr18	  1655178	  1655682	+	ENSG00000266450.1	ENST00000580524.1	CTD-2015H3.2	CTD-2015H3.2-001	NA	NA	NA	inter
CUST_34422_PI429285431	4.516983	P	4.833287	P	0.803124747094949	0	lncRNA	35902-1_{1..1209}	n341295|CR612097|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3764|NULL|4.1097900|-0.2692744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341295|CR612097|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3764|NULL|4.1097900|-0.2692744	chr7	107220796	107222004	+	NA	NA	NA	NA	DUS4L	NA	chr7:107210796-107218968	inner
CUST_3206_PI429285431	8.609491	P	8.790827	P	0.881885952286202	0	lncRNA	3184-1_{1..820}	"transcript_id ""ENST00000519412.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519412.1"" | genecode_v17"	chr8	 82066514	 82067333	+	ENSG00000253214.1	ENST00000519412.1	RP11-1149M10.2	RP11-1149M10.2-002	NA	NA	NA	inter
CUST_21624_PI429285431	0.94313157	A	1.1781404	A	0.849679798666361	0	lncRNA	23236-1_{1..510}	lnc-RBL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RBL2-2:1	chr16	 53203094	 53203603	+	lnc-RBL2-2	lnc-RBL2-2:1	ENSG00000261291.1	RP11-295M3.2	CHD9	NA	chr16:53193094-53213362	inner
CUST_10731_PI429285431	0.9254867	A	0.9281271	A	0.998171487953251	0	lncRNA	12269-1_{1..451}	lnc-CCDC63-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC63-2:8	chr12	111395826	111396276	+	lnc-CCDC63-2	lnc-CCDC63-2:8	XLOC_009879	linc-CUX2-1	NA	NA	NA	inter
CUST_40667_PI429285431	0.9115266	A	0.9153163	A	0.997376627202207	0	lncRNA	41401-1_{1..1126}	n410221|NR_037169_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037169_6||-1.0919000|-0.3300948	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410221|NR_037169_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037169_6||-1.0919000|-0.3300948	chr6	  3468303	  3469428	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36459_PI429285431	3.179358	P	3.6242397	P	0.734644554517027	0	lncRNA	37669-1_{1..333}	n344969|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_518|NULL|-1.6671900|-0.3366604	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n344969|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_518|NULL|-1.6671900|-0.3366604	chr7	116073137	116073469	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48089_PI429285431	8.117792	P	8.296354	P	0.883583265287872	0	lncRNA	51965-1_{1..457}	"gi|341914634|ref|XR_133419.1| PREDICTED: Homo sapiens uncharacterized LOC100653086 (LOC100653086), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341914634|ref|XR_133419.1| PREDICTED: Homo sapiens uncharacterized LOC100653086 (LOC100653086), misc_RNA"	NA	NA	NA	NA	NA	XR_133419.1	NA	NA	NA	NA	NA	Unknown
CUST_11597_PI429285431	1.8712187	A	0.90974796	A	1.94729403133308	0	lncRNA	13177-1_{1..540}	lnc-EIF4A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF4A2-1:1	chr3	186535566	186536105	+	lnc-EIF4A2-1	lnc-EIF4A2-1:1	XLOC_002961	linc-ADIPOQ	NA	NA	NA	inter
CUST_10236_PI429285431	6.0340614	P	6.258553	P	0.855896587101431	0	lncRNA	11760-1_{1..952}	lnc-ERI1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERI1-1:1	chr8	  8845397	  8846348	+	lnc-ERI1-1	lnc-ERI1-1:1	XLOC_006701	linc-ERI1-1	NA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30"	NA	inter
LNCA_21_P0003825	6.730967	P	6.3658323	P	1.28800188067127	0	lncRNA	TCONS_00008740	NA	NA	NA	NA	XLOC_003422	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003422), lincRNA [TCONS_00008740]"	chr4:1553384-1553517	hs|4p16.3	Agilent_HUMAN_G3V2	TCONS_00008740	TCONS_00008740	chr4	  1553384	  1553517	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26613_PI429285431	1.5684435	A	1.3252577	A	1.18360344437368	0	lncRNA	28116-1_{1..506}	lnc-ZDHHC6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZDHHC6-2:1	chr10	114168970	114169475	-	lnc-ZDHHC6-2	lnc-ZDHHC6-2:1	ENSG00000232934.1	RP11-324O2.3	ACSL5	NA	chr10:114158970-114179252	inner
CUST_40684_PI429285431	1.9100292	A	2.0116365	A	0.931994082543171	0	lncRNA	41419-1_{1..548}	n410242|NR_037172_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037172_3||-1.1201300|-0.4170866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410242|NR_037172_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037172_3||-1.1201300|-0.4170866	chr6	  3399751	  3400298	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3389751-3411315	inner
CUST_24211_PI429285431	1.3459353	A	1.0339392	A	1.24142413561198	0	lncRNA	25762-1_{1..586}	lnc-SPRED2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPRED2-6:1	chr2	 66668630	 66669215	-	lnc-SPRED2-6	lnc-SPRED2-6:1	ENSG00000230749.2	MEIS1-AS2	MEIS1	NA	chr2:66662532-66678968	inner
CUST_7549_PI429285431	3.3491979	P	3.7537737	P	0.755458389850299	0	lncRNA	9185-1_{1..805}	lnc-DCTD-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DCTD-4:2	chr4	183065492	183066296	-	lnc-DCTD-4	lnc-DCTD-4:2	ENSG00000177822	AC108142.1	NA	NA	NA	inter
CUST_8295_PI429285431	6.7806296	P	7.283765	P	0.705571699191233	0	lncRNA	9880-1_{1..1786}	lnc-GADD45B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GADD45B-1:2	chr19	  2541459	  2543244	+	lnc-GADD45B-1	lnc-GADD45B-1:2	ENSG00000247581	ENST00000500742	GNG7	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-54.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-54.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20chr19:2531459-2551663"	NA	inner
LNCA_21_P0010445	1.0347861	A	1.036762	A	0.998631347945623	0	lncRNA	TCONS_00029707	NA	NA	NA	NA	XLOC_014390	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014390), lincRNA [TCONS_00029707]"	chr22:43784151-43782063	hs|22q13.2	Agilent_HUMAN_G3V2	TCONS_00029707	TCONS_00029707	chr22	 43782063	 43784151	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001265	1.0378184	A	1.0392565	A	0.999003681694631	0	lncRNA	TCONS_00000842	NA	NA	NA	NA	XLOC_000057	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000057), lincRNA [TCONS_00000842]"	chr1:14532546-14532851	hs|1p36.21	Agilent_HUMAN_G3V2	TCONS_00000842	TCONS_00000842	chr1	 14532546	 14532851	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11076_PI429285431	0.92298275	A	0.9090328	A	1.00971626789575	0	lncRNA	12628-1_{1..361}	lnc-SUMF2-5:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUMF2-5:7	chr7	 56742545	 56742905	+	lnc-SUMF2-5	lnc-SUMF2-5:7	XLOC_006112	linc-ZNF716-3	NA	NA	NA	inter
CUST_26813_PI429285431	0.9216374	A	0.9174992	A	1.00287249940542	0	lncRNA	28326-1_{1..2214}	n323882|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056342|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056342|2.1786600|-0.3916258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323882|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056342|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056342|2.1786600|-0.3916258	chrX	 45249576	 45251789	+	NA	NA	NA	NA	NA	"hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40"	NA	inter
CUST_8088_PI429285431	0.93082035	A	0.92543155	A	1.00374221619763	0	lncRNA	9694-1_{1..2119}	lnc-NTNG2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NTNG2-2:1	chr9	134759280	134761398	+	lnc-NTNG2-2	lnc-NTNG2-2:1	ENSG00000249120	ENST00000513896	MED27	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MED27:range=chr9:134735925-1349552315'pad=0,hg19_refFlat_MED27:range=chr9:134735925-1349552315'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80chr9:134749280-134769568"	NA	inner
CUST_50025_PI429285431	1.7939525	A	0.9053507	A	1.85138097262961	0	lncRNA	53763-1_{1..554}	hg19_lincRNAsTranscripts_TCONS_l2_00027601 range=chr8:9183294-9185745 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027601 range=chr8:9183294-9185745 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	  9183294	  9183847	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32845_PI429285431	2.8091984	A	2.4560053	A	1.27738472150964	0	lncRNA	34479-1_{1..548}	n339503|AJ001889|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1943|NULL|-1.0692300|-0.1615034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339503|AJ001889|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1943|NULL|-1.0692300|-0.1615034	chr21	 39187748	 39188295	-	NA	NA	NA	NA	KCNJ6	NA	chr21:39177748-39198289	inner
CUST_4966_PI429285431	5.5619545	P	5.3034477	P	1.19623994650669	0	lncRNA	4910-1_{1..767}	"transcript_id ""ENST00000554321.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554321.1"" | genecode_v17"	chr14	 96343156	 96343922	+	ENSG00000250366.2	ENST00000554321.1	LINC00617	LINC00617-003	NA	NA	NA	inter
CUST_15413_PI429285431	0.9213771	A	1.5504203	A	0.646605103737656	0	lncRNA	17099-1_{1..837}	lnc-PDLIM1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDLIM1-2:2	chr10	 96904028	 96904864	-	lnc-PDLIM1-2	lnc-PDLIM1-2:2	XLOC_008910	linc-CYP2C8	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.40"	NA	inter
CUST_24680_PI429285431	8.119605	P	8.146309	P	0.981660452004885	0	lncRNA	26227-1_{1..422}	lnc-CXADR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CXADR-1:1	chr21	 19182812	 19183233	+	lnc-CXADR-1	lnc-CXADR-1:1	ENSG00000244676.1	AL109761.5	C21orf91	"hg19_refFlat_C21orf91:range=chr21:19165732-191906355'pad=0,hg19_refFlat_C21orf91:range=chr21:19165732-191906355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00chr21:19172812-19191703"	NA	inner
CUST_6718_PI429285431	4.546359	P	4.677824	P	0.912903961372717	0	lncRNA	6666-1_{1..486}	"transcript_id ""ENST00000421642.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421642.1"" | genecode_v17"	chr20	 51288456	 51288941	+	ENSG00000232294.1	ENST00000421642.1	RP4-715N11.2	RP4-715N11.2-005	NA	NA	NA	inter
CUST_41559_PI429285431	0.9126781	A	0.90444374	A	1.00572394293403	0	lncRNA	42860-1_{1..76}	ENST00000581927 ncrna:miRNA chromosome:GRCh37:7:72162874:72162949:1 gene:ENSG00000264494 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581927 ncrna:miRNA chromosome:GRCh37:7:72162874:72162949:1 gene:ENSG00000264494 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 72162874	 72162949	+	ENSG00000264494	ENST00000581927	NA	NA	TYW1B	NA	chr7:72152874-72172949	inner
CUST_45946_PI429285431	3.1000237	P	1.8712742	A	2.34363759832707	0	lncRNA	50246-2_{3001..6000}	"gi|242247131|ref|NR_027948.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant beta, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|242247131|ref|NR_027948.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant beta, non-coding RNA"	Chr12	  1103404	  1106403	+	23085	NR_027948.1	NA	NA	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10"	NA	inter
CUST_260_PI429201921	1.0530255	A	0.9300373	A	1.08898810831704	0	lncRNA	192-1_{1..3000}	TC01005702.hg.1	TCONS_l2_00002597-XLOC_l2_001050 // Broad TUCP // linc-DENND2D chr1:-:111927140-111932473 // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00002598-XLOC_l2_001050 // Broad TUCP // linc-DENND2D chr1:-:111930958-111933696 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:111927140-111932473	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00002597-XLOC_l2_001050	linc-DENND2D	chr1	111927140	111932473	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2866_PI429285431	0.9196619	A	1.0219026	A	0.931584990208247	0	lncRNA	2847-1_{1..758}	"transcript_id ""ENST00000424888.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424888.2"" | genecode_v17"	chr7	 67556210	 67556967	+	ENSG00000236531.2	ENST00000424888.2	RP5-945F2.2	RP5-945F2.2-001	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50"	NA	inter
CUST_9989_PI429285431	0.9284897	A	0.9527609	A	0.983317211191948	0	lncRNA	11514-1_{1..762}	lnc-TOX3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TOX3-1:2	chr16	 52640416	 52641177	-	lnc-TOX3-1	lnc-TOX3-1:2	XLOC_011943	linc-TOX3-3	NA	NA	NA	inter
LNCA_21_P0012834	2.4008675	A	1.8925759	A	1.42236487236658	0	lncRNA	ENST00000513310	NA	NA	NA	NA	THBS4	thrombospondin 4	ENST00000513310	NA	GO:0031594|GO:0005509|GO:0005518|GO:0071603|GO:0050731|GO:0005576|GO:0005615|GO:0005604|GO:0007399|GO:0005178|GO:0001938|GO:0005198|GO:0048812|GO:0043237|GO:0016525|GO:0090023|GO:0051260|GO:0001968|GO:0007155|GO:0008201|GO:0051451	"BROAD Institute lincRNA (XLOC_l2_011649), lincRNA [TCONS_l2_00022386]"	chr5:79287174-79287233	hs|5q14.1	Agilent_HUMAN_G3V2	ENST00000513310	ENST00000513310	chr5	 79287174	 79287233	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28973_PI429285431	6.6046314	P	7.159735	P	0.6806081819887	0	lncRNA	30695-1_{1..666}	n326405|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000100473|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000100473|-0.2506100|-0.1917885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326405|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000100473|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000100473|-0.2506100|-0.1917885	chr1	144084410	144085075	-	NA	NA	NA	NA	NA	"hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20"	NA	inter
CUST_8982_PI429285431	3.5282989	P	4.1944933	P	0.630166776476012	0	lncRNA	10512-2_{3001..5431}	lnc-MRPL41-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-MRPL41-1:1	chr9	140457338	140459768	+	lnc-MRPL41-1	lnc-MRPL41-1:1	ENSG00000250226	ENST00000505429	PNPLA7	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-54.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_WDR85:range=chr9:140449691-1404732295'pad=0,hg19_refFlat_WDR85:range=chr9:140449691-1404732295'pad=0 3'pad=0 strand=- repeatMasking=none,-96.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60chr9:140444338-140444986"	NA	inner
CUST_39670_PI429285431	12.629732	P	12.161431	P	1.38347924427796	0	lncRNA	40610-1_{1..1839}	n405299|NR_001434_8|lncRNA|Homosapiens||RefGeneNoncode|NR_001434_8||8.0040500|-0.1819288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405299|NR_001434_8|lncRNA|Homosapiens||RefGeneNoncode|NR_001434_8||8.0040500|-0.1819288	chr6	 29855382	 29857220	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4441_PI429285431	4.5876856	P	4.7696767	P	0.881485595783771	0	lncRNA	4391-1_{1..479}	"transcript_id ""ENST00000537157.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537157.1"" | genecode_v17"	chr12	122233476	122233954	-	ENSG00000212694.4	ENST00000537157.1	AC084018.1	AC084018.1-012	SETD1B	NA	chr12:122242638-122248913	inter
LNCA_21_P0008165	3.6990082	P	3.7340655	P	0.975992996167147	0	lncRNA	TCONS_00022026	NA	NA	NA	NA	XLOC_010623	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010623), lincRNA [TCONS_00022026]"	chr13:53507349-53507290	hs|13q14.3	Agilent_HUMAN_G3V2	TCONS_00022026	TCONS_00022026	chr13	 53507290	 53507349	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37944_PI429285431	3.9928126	P	4.299045	P	0.8087510582589	0	lncRNA	39034-1_{1..1813}	n346491|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2041|NULL|-1.3963800|-0.1018907	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346491|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2041|NULL|-1.3963800|-0.1018907	chr9	130879985	130881797	+	NA	NA	NA	NA	SLC25A25	NA	chr9:130869985-130871524	inter
CUST_6522_PI429285431	0.9881435	A	0.91941893	A	1.0487890804372	0	lncRNA	6465-1_{1..580}	"transcript_id ""ENST00000599316.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599316.1"" | genecode_v17"	chr19	 42037566	 42038145	+	ENSG00000268355.1	ENST00000599316.1	AC006129.1	AC006129.1-001	NA	NA	NA	inter
CUST_10721_PI429285431	1.0937619	A	0.9073821	A	1.13790475017631	0	lncRNA	12257-1_{1..222}	lnc-ZDHHC17-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZDHHC17-5:1	chr12	 77513814	 77514035	+	lnc-ZDHHC17-5	lnc-ZDHHC17-5:1	XLOC_009812	linc-NAV3-2	NA	NA	NA	inter
CUST_47764_PI429285431	1.6956916	A	0.92462957	A	1.70652556828292	0	lncRNA	51700-1_{1..3000}	"gi|385137107|ref|NR_047645.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 75, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137107|ref|NR_047645.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 75, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047645.1	NA	NA	NA	NA	NA	inter
CUST_43439_PI429285431	6.3828773	P	6.57721	P	0.873977049263236	0	lncRNA	48247-1_{1..2326}	"gi|395132431|ref|NR_073016.1| Homo sapiens ST3 beta-galactoside alpha-2,3-sialyltransferase 3 (ST3GAL3), transcript variant 19, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|395132431|ref|NR_073016.1| Homo sapiens ST3 beta-galactoside alpha-2,3-sialyltransferase 3 (ST3GAL3), transcript variant 19, non-coding RNA"	Chr1	 44173204	 44175529	+	6487	NR_073016.1	NA	NA	NA	NA	NA	inter
CUST_6982_PI429285431	6.844475	P	7.0856895	P	0.846032799032749	0	lncRNA	6930-1_{1..768}	"transcript_id ""ENST00000423712.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423712.1"" | genecode_v17"	chr22	 35099117	 35099884	-	ENSG00000234891.1	ENST00000423712.1	RP1-288L1.5	RP1-288L1.5-001	NA	NA	NA	inter
CUST_34677_PI429285431	0.91376185	A	0.9219723	A	0.99432511308127	0	lncRNA	36130-1_{1..1268}	n341583|BC033057|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4054|NULL|-1.0750500|-0.3092319	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341583|BC033057|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4054|NULL|-1.0750500|-0.3092319	chr8	109619078	109620345	-	NA	NA	NA	NA	TMEM74	NA	chr8:109795346-109799770	inner
CUST_47390_PI429285431	0.9161327	A	0.9154826	A	1.00045071652426	0	lncRNA	51438-1_{1..853}	"gi|224458296|ref|NR_027065.1| Homo sapiens long intergenic non-protein coding RNA 114 (LINC00114), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224458296|ref|NR_027065.1| Homo sapiens long intergenic non-protein coding RNA 114 (LINC00114), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NR_027065.1	NA	NA	NA	NA	NA	Unknown
CUST_40125_PI429285431	0.90936935	A	0.908865	A	1.00034964989379	0	lncRNA	40966-1_{1..768}	n407680|NR_027148|lncRNA|Homosapiens||RefGeneNoncode|NR_027148||1.5020300|-0.1598229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n407680|NR_027148|lncRNA|Homosapiens||RefGeneNoncode|NR_027148||1.5020300|-0.1598229	chr19	  4769116	  4769883	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3104_PI429285431	1.2039527	A	0.94282764	A	1.19841290124299	0	lncRNA	3084-1_{1..594}	"transcript_id ""ENST00000521558.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521558.1"" | genecode_v17"	chr8	 54307771	 54308364	-	ENSG00000253369.1	ENST00000521558.1	RP11-1081M5.1	RP11-1081M5.1-001	NA	NA	NA	inter
CUST_2737_PI429285431	2.3737192	A	2.3680308	A	1.0039506818723	0	lncRNA	2722-1_{1..496}	"transcript_id ""ENST00000487884.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000487884.1"" | genecode_v17"	chr7	   148329	   148824	-	ENSG00000242474.1	ENST00000487884.1	AC093627.9	AC093627.9-004	NA	NA	NA	inter
CUST_29266_PI429285431	4.986631	P	5.3694453	P	0.766940042035691	0	lncRNA	31017-1_{1..549}	n332371|EU392455|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000557665|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000557665|5.2366500|-0.1022720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332371|EU392455|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000557665|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000557665|5.2366500|-0.1022720	chr19	   873536	   874084	-	NA	NA	NA	NA	C19orf22	NA	chr19:896503-901007	inner
CUST_24698_PI429285431	1.2292295	A	2.1130118	A	0.541944755708866	0	lncRNA	26244-1_{1..481}	lnc-TMEM74-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM74-1:1	chr8	110075518	110075998	-	lnc-TMEM74-1	lnc-TMEM74-1:1	ENSG00000253796.1	RP11-1084E5.1	NA	NA	NA	inter
CUST_50869_PI429285431	7.7704782	P	8.695605	P	0.526634229501299	0	lncRNA	54513-1_{1..641}	hg19_lincRNAsTranscripts_TCONS_l2_00004767 range=chr11:112161001-112162499 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004767 range=chr11:112161001-112162499 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	112161001	112161641	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22863_PI429285431	4.1917357	P	3.947518	P	1.1844503297223	0	lncRNA	24441-1_{1..327}	lnc-CHST2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHST2-4:1	chr3	143100786	143101112	+	lnc-CHST2-4	lnc-CHST2-4:1	ENSG00000244493.1	SLC9A9-AS2	SLC9A9	"hg19_refFlat_SLC9A9:range=chr3:142985544-1435671645'pad=0,hg19_refFlat_SLC9A9:range=chr3:142985544-1435671645'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20chr3:143090786-143111003"	NA	inner
CUST_25537_PI429285431	7.365944	P	7.716181	P	0.784455220238264	0	lncRNA	27067-1_{1..175}	lnc-TM7SF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TM7SF2-1:1	chr11	 64884844	 64885018	+	lnc-TM7SF2-1	lnc-TM7SF2-1:1	ENSG00000255173.1	AP003068.12	TM7SF2	"hg19_refFlat_ZNHIT2:range=chr11:64883914-648851255'pad=0,hg19_refFlat_ZNHIT2:range=chr11:64883914-648851255'pad=0 3'pad=0 strand=- repeatMasking=none,-104.80chr11:64879341-64883707"	NA	inner
CUST_4287_PI429285431	0.91611075	A	0.9182514	A	0.998517314753404	0	lncRNA	4242-1_{1..447}	"transcript_id ""ENST00000510459.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510459.2"" | genecode_v17"	chr12	 65314625	 65315071	-	ENSG00000248995.2	ENST00000510459.2	RP11-766N7.4	RP11-766N7.4-001	NA	NA	NA	inter
CUST_18109_PI429285431	1.0392565	A	0.90974206	A	1.09392546277057	0	lncRNA	19844-1_{1..1248}	lnc-MTRR-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-MTRR-4:1	chr5	  8580330	  8581577	+	lnc-MTRR-4	lnc-MTRR-4:1	XLOC_004285	linc-CCT5-7	NA	NA	NA	inter
CUST_29270_PI429285431	9.908085	P	9.7796135	P	1.09313493788129	0	lncRNA	31021-1_{1..225}	n332377|EF601655|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000503709|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000503709|-1.0973800|-0.2635825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332377|EF601655|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000503709|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000503709|-1.0973800|-0.2635825	chr17	 80439021	 80439245	+	NA	NA	NA	NA	NARF	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30chr17:80429021-80446143"	NA	inner
CUST_18546_PI429285431	1.3897756	A	0.9024036	A	1.40188888058196	0	lncRNA	20257-1_{1..657}	lnc-HOXA9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HOXA9-1:1	chr7	 27214321	 27214977	-	lnc-HOXA9-1	lnc-HOXA9-1:1	ENSG00000257667	RP1-170O19.21	HOXA10	NA	chr7:27210210-27219880	inter
CUST_804_PI429285431	2.5330381	A	1.2449961	A	2.44196411520622	0	lncRNA	797-1_{1..374}	"transcript_id ""ENST00000416032.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416032.1"" | genecode_v17"	chr2	 21861303	 21861676	-	ENSG00000228538.1	ENST00000416032.1	AC009411.1	AC009411.1-002	NA	NA	NA	inter
CUST_26679_PI429285431	0.91087824	A	0.90726537	A	1.00250738890901	0	lncRNA	28177-1_{1..3000}	"lncrnadb|Beta-MHC_antisense_transcripts_gi|26092665|dbj|AK048126.1|_Mus_musculus_16_days_embryo_head_cDNA,_RIKEN_full-length_enriched_library,_clone:C130036G20_product:similar_to_BETA-MYOSIN_HEAVY_CHAIN,_BETA-MHC_[Homo_sapiens],_full_insert_sequence"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncrnadb20130808	"lncrnadb20130808,NONCODERv3,"	">lncrnadb|Beta-MHC_antisense_transcripts_gi|26092665|dbj|AK048126.1|_Mus_musculus_16_days_embryo_head_cDNA,_RIKEN_full-length_enriched_library,_clone:C130036G20_product:similar_to_BETA-MYOSIN_HEAVY_CHAIN,_BETA-MHC_[Homo_sapiens],_full_insert_sequence"	NA	NA	     2999	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27741_PI429285431	1.0261457	A	1.0326629	A	0.995492809203684	0	lncRNA	29323-1_{1..2010}	n324958|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079681|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079681|-1.1880400|-0.2451871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324958|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079681|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079681|-1.1880400|-0.2451871	chr20	 48317429	 48319438	+	NA	NA	NA	NA	B4GALT5	NA	chr20:48307429-48330421	inner
CUST_22987_PI429285431	1.050933	A	0.9187674	A	1.09593755661027	0	lncRNA	24561-1_{1..454}	lnc-SAMD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAMD3-1:1	chr6	130463829	130464282	-	lnc-SAMD3-1	lnc-SAMD3-1:1	ENSG00000227678.1	RP11-73O6.3	L3MBTL3	"hg19_refFlat_L3MBTL3:range=chr6:130363845-1304608985'pad=0,hg19_refFlat_L3MBTL3:range=chr6:130363845-1304608985'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60chr6:130453829-130462594"	NA	inter
CUST_39978_PI429285431	6.690273	P	5.659021	P	2.04379713061071	0	lncRNA	40849-1_{1..3000}	n407062|NR_024557|lncRNA|Homosapiens||RefGeneNoncode|NR_024557||4.7864800|-0.2526848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407062|NR_024557|lncRNA|Homosapiens||RefGeneNoncode|NR_024557||4.7864800|-0.2526848	chr10	 28821421	 28824420	+	NA	NA	NA	NA	WAC	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr10:28821427-28909925"	NA	inner
CUST_48484_PI429285431	3.5708518	P	3.8943636	P	0.79912228925063	0	lncRNA	52337-1_{1..534}	hg19_lincRNAsTranscripts_TCONS_l2_00001842 range=chr1:230011320-230027818 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001842 range=chr1:230011320-230027818 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	230011320	230011853	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13934_PI429285431	0.9046393	A	0.9071069	A	0.998291051934793	0	lncRNA	15581-1_{1..916}	lnc-C10orf136-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf136-1:5	chr10	 44409207	 44410122	+	lnc-C10orf136-1	lnc-C10orf136-1:5	XLOC_008473	linc-TMEM72-2	NA	NA	NA	inter
CUST_48659_PI429285431	2.4439085	A	1.1452951	A	2.4599234137738	0	lncRNA	52504-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00013804 range=chr2:96194609-96199699 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013804 range=chr2:96194609-96199699 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 96194609	 96197608	+	NA	NA	NA	NA	TRIM43	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr2:96191094-96209699"	NA	inter
CUST_31884_PI429285431	0.9060472	A	0.90673697	A	0.999522002146657	0	lncRNA	33615-1_{1..2273}	n338438|AL110248|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|835|NULL|-1.0253900|-0.4175048	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338438|AL110248|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|835|NULL|-1.0253900|-0.4175048	chr1	196492116	196494388	+	NA	NA	NA	NA	KCNT2	NA	chr1:196482116-196504377	inner
CUST_32863_PI429285431	0.92157805	A	2.307455	A	0.382656828538452	0	lncRNA	34492-2_{3001..3094}	n339524|BX537548|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1965|NULL|-0.9635880|-0.1266660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n339524|BX537548|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1965|NULL|-0.9635880|-0.1266660	chr3	127202532	127202625	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40080_PI429285431	5.154798	P	5.5960345	P	0.736503098568305	0	lncRNA	40927-2_{3001..3955}	n407383|NR_026837|lncRNA|Homosapiens||RefGeneNoncode|NR_026837||2.6022100|-0.2731617	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n407383|NR_026837|lncRNA|Homosapiens||RefGeneNoncode|NR_026837||2.6022100|-0.2731617	chr12	 72650286	 72651240	-	NA	NA	NA	NA	TRHDE	"hg19_refFlat_TRHDE:range=chr12:72666559-730569755'pad=0,hg19_refFlat_TRHDE:range=chr12:72666559-730569755'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.20chr12:72666529-72677289"	NA	inner
CUST_26389_PI429285431	5.254485	P	5.9597216	P	0.613341893152511	0	lncRNA	27895-1_{1..541}	lnc-CIT-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CIT-4:1	chr12	119620679	119621219	-	lnc-CIT-4	lnc-CIT-4:1	ENSG00000256609.1	RP11-64B16.4	HSPB8	NA	chr12:119616595-119631064	inner
CUST_9926_PI429285431	2.6156178	A	2.451961	A	1.12012271861822	0	lncRNA	11451-1_{1..329}	lnc-C20orf187-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf187-2:2	chr20	 10846297	 10846625	+	lnc-C20orf187-2	lnc-C20orf187-2:2	XLOC_013461	linc-BTBD3-3	NA	NA	NA	inter
CUST_41256_PI429285431	0.9117259	A	0.91574574	A	0.997217537482247	0	lncRNA	42217-1_{1..111}	ENST00000362317 ncrna:miRNA chromosome:GRCh37:17:29902430:29902540:1 gene:ENSG00000199187 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362317 ncrna:miRNA chromosome:GRCh37:17:29902430:29902540:1 gene:ENSG00000199187 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 29902430	 29902540	+	ENSG00000199187	ENST00000362317	NA	NA	NA	NA	NA	inter
CUST_8387_PI429285431	0.9300052	A	0.92011774	A	1.00687700375654	0	lncRNA	9965-1_{1..609}	lnc-SOX2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SOX2-1:4	chr3	181417386	181417994	+	lnc-SOX2-1	lnc-SOX2-1:4	ENSG00000242808	RP11-4B14.2	NA	NA	NA	inter
CUST_29272_PI429285431	4.6507554	P	2.9778466	A	3.18856833437086	0	lncRNA	31023-1_{1..409}	n332379|EF210210|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000503687|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000503687|1.5713000|-0.1497249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332379|EF210210|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000503687|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000503687|1.5713000|-0.1497249	chr7	 55224299	 55224707	+	NA	NA	NA	NA	EGFR	NA	chr7:55214299-55248904	inner
LNCA_21_P0011184	6.9579945	P	6.41733	P	1.4546423659373	0	lncRNA	TCONS_l2_00007206	NA	NA	NA	NA	XLOC_l2_003992	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003992), lincRNA [TCONS_l2_00007206]"	chr13:52744164-52744105	hs|13q14.3	Agilent_HUMAN_G3V2	TCONS_l2_00007206	TCONS_l2_00007206	chr13	 52744105	 52744164	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012726	8.863839	P	9.005592	P	0.906417110258366	0	lncRNA	ENST00000512175	XR_112634	XR_112634	NA	Hs.573073	XLOC_l2_010679	NA	ENST00000512175	THC2502312	NA	"PREDICTED: Homo sapiens hypothetical LOC100506564 (LOC100506564), miscRNA [XR_112634]"	chr4:57450680-57450739	hs|4q12	Agilent_HUMAN_G3V2	ENST00000512175	ENST00000512175	chr4	 57450680	 57450739	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45648_PI429285431	2.0479827	A	2.9615333	P	0.530876947072496	0	lncRNA	50025-1_{1..2171}	"gi|336285291|ref|NR_038464.1| Homo sapiens uncharacterized LOC439990 (LOC439990), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336285291|ref|NR_038464.1| Homo sapiens uncharacterized LOC439990 (LOC439990), non-coding RNA"	Chr10	 81967466	 81969636	+	439990	NR_038464.1	NA	NA	NA	NA	NA	inter
CUST_8081_PI429285431	1.7127341	A	1.9489235	A	0.848984782645644	0	lncRNA	9687-1_{1..981}	lnc-ZFC3H1-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZFC3H1-8:2	chr12	 73537533	 73538513	-	lnc-ZFC3H1-8	lnc-ZFC3H1-8:2	ENSG00000258294	RP11-314D7.1	NA	NA	NA	inter
CUST_22046_PI429285431	1.3480518	A	0.9166428	A	1.34854998769157	0	lncRNA	23654-1_{1..2104}	lnc-FN1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FN1-3:5	chr2	216692075	216694178	-	lnc-FN1-3	lnc-FN1-3:5	ENSG00000235770.1	LINC00607	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50"	NA	inter
CUST_41458_PI429285431	10.869478	P	11.923046	P	0.481775187974176	0	lncRNA	42645-1_{1..113}	ENST00000516157 ncrna:miRNA chromosome:GRCh37:Y:10033981:10034093:1 gene:ENSG00000251966 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516157 ncrna:miRNA chromosome:GRCh37:Y:10033981:10034093:1 gene:ENSG00000251966 gene_biotype:miRNA transcript_biotype:miRNA	chrY	 10033981	 10034093	+	ENSG00000251966	ENST00000516157	NA	NA	NA	NA	NA	inter
LNCA_21_P0005593	0.92513657	A	1.8725119	A	0.518575038804129	0	lncRNA	TCONS_00014246	NA	NA	NA	NA	XLOC_006329	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006329), lincRNA [TCONS_00014246]"	chr7:389922-389863	hs|7p22.3	Agilent_HUMAN_G3V2	TCONS_00014246	TCONS_00014246	chr7	   389863	   389922	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45992_PI429285431	1.4937359	A	0.9067824	A	1.50207151237723	0	lncRNA	50281-1_{1..476}	"gi|310122847|ref|XR_109084.1| PREDICTED: Homo sapiens uncharacterized LOC100506226, transcript variant 1 (LOC100506226), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310122847|ref|XR_109084.1| PREDICTED: Homo sapiens uncharacterized LOC100506226, transcript variant 1 (LOC100506226), misc_RNA"	NA	NA	NA	NA	NA	XR_109084.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004634	0.92560875	A	0.9232955	A	1.00160470888497	0	lncRNA	ENST00000427011	NA	NA	NA	NA	XLOC_005178	NA	ENST00000427011	NA	NA	"BROAD Institute lincRNA (XLOC_005178), lincRNA [TCONS_00011269]"	chr6:14007052-14007111	hs|6p23	Agilent_HUMAN_G3V2	ENST00000427011	ENST00000427011	chr6	 14007052	 14007111	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13950_PI429285431	2.4385824	A	2.9489052	A	0.702065334642666	0	lncRNA	15597-1_{1..357}	lnc-MTUS2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTUS2-2:1	chr13	 30170824	 30171180	+	lnc-MTUS2-2	lnc-MTUS2-2:1	XLOC_010330	linc-USPL1-7	SLC7A1	NA	chr13:30160824-30169825	inter
CUST_42497_PI429285431	6.103622	P	6.3757906	P	0.828073883144433	0	lncRNA	45266-1_{1..68}	ENST00000364099 ncrna:snoRNA chromosome:GRCh37:9:84503833:84503900:1 gene:ENSG00000200969 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364099 ncrna:snoRNA chromosome:GRCh37:9:84503833:84503900:1 gene:ENSG00000200969 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	 84503833	 84503900	+	ENSG00000200969	ENST00000364099	NA	NA	NA	NA	NA	inter
CUST_51509_PI429285431	10.394264	P	10.5277	P	0.911657609858497	0	lncRNA	55084-2_{3001..3125}	hg19_lincRNAsTranscripts_TCONS_l2_00010364 range=chr16:89262175-89267575 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010364 range=chr16:89262175-89267575 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 89265175	 89265299	-	NA	NA	NA	NA	CDH15	NA	chr16:89252175-89261900	inner
CUST_10472_PI429285431	1.1185898	A	1.257865	A	0.907975201205112	0	lncRNA	11998-1_{1..357}	lnc-SNX16-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNX16-1:3	chr8	 83072652	 83073008	-	lnc-SNX16-1	lnc-SNX16-1:3	XLOC_007136	linc-SNX16-2	NA	NA	NA	inter
CUST_8320_PI429285431	5.017815	P	5.3322954	P	0.804140557275107	0	lncRNA	9905-1_{1..847}	lnc-CRYBA4-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:9	chr22	 27061495	 27062341	+	lnc-CRYBA4-1	lnc-CRYBA4-1:9	ENSG00000225783	XLOC_014192	NA	NA	NA	inter
CUST_48758_PI429285431	5.104619	P	5.161257	P	0.96150215755145	0	lncRNA	52595-1_{1..1569}	hg19_lincRNAsTranscripts_TCONS_l2_00014951 range=chr2:154277040-154306315 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014951 range=chr2:154277040-154306315 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	154277040	154278608	-	NA	NA	NA	NA	RPRM	NA	chr2:154267040-154316315	inter
CUST_18341_PI429285431	4.569838	P	4.60542	P	0.975638097593787	0	lncRNA	20070-1_{1..624}	lnc-MYC-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYC-2:9	chr8	128902835	128903458	+	lnc-MYC-2	lnc-MYC-2:9	ENSG00000249859	PVT1	NA	NA	NA	inter
CUST_1854_PI429285431	0.9116381	A	0.9094786	A	1.00149797217756	0	lncRNA	1844-1_{1..2516}	"transcript_id ""ENST00000422145.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422145.3"" | genecode_v17"	chr4	118349552	118352067	+	ENSG00000236922.4	ENST00000422145.3	AC092661.1	AC092661.1-002	NA	NA	NA	inter
CUST_9912_PI429285431	1.1128644	A	1.2257953	A	0.924707567281462	0	lncRNA	11436-1_{1..828}	lnc-POC1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POC1A-1:1	chr3	 52220687	 52221514	-	lnc-POC1A-1	lnc-POC1A-1:1	XLOC_003125	linc-POC1A-1	NA	NA	NA	inter
LNCA_21_P0014103	7.0751834	P	6.1969323	P	1.83814566700578	0	lncRNA	XR_108450	XR_108450	XR_108450	NA	Hs.710861	LOC100287375	uncharacterized LOC100287375	ENST00000458314	THC2641033	NA	"PREDICTED: Homo sapiens hypothetical LOC100287375 (LOC100287375), miscRNA [XR_108450]"	chr2:173329052-173328993	hs|2q31.1	Agilent_HUMAN_G3V2	XR_108450	XR_108450	chr2	173328993	173329052	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10741_PI429285431	7.182927	P	6.4369736	P	1.67708219714746	0	lncRNA	12277-1_{1..1676}	lnc-CA5A-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CA5A-4:6	chr16	 88217950	 88219625	-	lnc-CA5A-4	lnc-CA5A-4:6	XLOC_012057	linc-CA5A-2	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80"	NA	inter
CUST_45767_PI429285431	5.259784	P	5.4899483	P	0.852537795755176	0	lncRNA	50112-1_{1..671}	"gi|378548186|ref|NR_034093.2| Homo sapiens MRVI1 antisense RNA 1 (MRVI1-AS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|378548186|ref|NR_034093.2| Homo sapiens MRVI1 antisense RNA 1 (MRVI1-AS1), transcript variant 3, non-coding RNA"	Chr11	 10562783	 10563453	+	100129827	NR_034093.2	NA	NA	NA	"hg19_refFlat_MRVI1:range=chr11:10597879-106479355'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-106479355'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_MRVI1:range=chr11:10597879-106555705'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-106555705'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_MRVI1:range=chr11:10597879-106737695'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-106737695'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_MRVI1:range=chr11:10597879-107151495'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-107151495'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50"	NA	inter
CUST_36516_PI429285431	0.9288407	A	1.0855209	A	0.897086993523427	0	lncRNA	37716-1_{1..3000}	n345017|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_566|NULL|-1.3343900|-0.3390775	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345017|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_566|NULL|-1.3343900|-0.3390775	chr8	102184674	102187673	+	NA	NA	NA	NA	ZNF706	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr8:102209266-102216979"	NA	inter
CUST_40231_PI429285431	1.6664468	A	0.91562235	A	1.68275419123786	0	lncRNA	41052-2_{3001..6000}	n408092|NR_028024|lncRNA|Homosapiens||RefGeneNoncode|NR_028024||5.6456600|-0.3727325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408092|NR_028024|lncRNA|Homosapiens||RefGeneNoncode|NR_028024||5.6456600|-0.3727325	chr11	 85371607	 85374606	-	NA	NA	NA	NA	TMEM126A	NA	chr11:85358963-85367597	inter
LNCA_21_P0009001	2.7221236	A	3.447497	P	0.604840478836587	0	lncRNA	TCONS_00024547	NA	NA	NA	NA	XLOC_011858	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011858), lincRNA [TCONS_00024547]"	chr16:3057139-3057080	hs|16p13.3	Agilent_HUMAN_G3V2	TCONS_00024547	TCONS_00024547	chr16	  3057080	  3057139	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38867_PI429285431	4.14357	P	5.3231907	P	0.441467549442841	0	lncRNA	39857-1_{1..3000}	n384750|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003lqp.2||1.0828400|-0.2094365	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,UCSC,"	>n384750|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003lqp.2||1.0828400|-0.2094365	chr5	148786439	148789438	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.01;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_C22orf39:range=chr22:19429167-194353225'pad=0,hg19_refFlat_C22orf39:range=chr22:19429167-194353225'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60"	NA	inter
CUST_24164_PI429285431	0.9300234	A	0.9252673	A	1.00330211732244	0	lncRNA	25715-1_{1..630}	lnc-SHF-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHF-3:3	chr15	 45548150	 45548779	-	lnc-SHF-3	lnc-SHF-3:3	ENSG00000259520.1	CTD-2651B20.3	SLC28A2	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90chr15:45544428-45558200"	NA	inner
CUST_21009_PI429285431	2.6099045	A	2.9305472	A	0.800713091897467	0	lncRNA	22638-1_{1..686}	lnc-C16orf88-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf88-1:1	chr16	 19777291	 19777976	-	lnc-C16orf88-1	lnc-C16orf88-1:1	ENSG00000261195.1	CTD-2380F24.1	IQCK	NA	chr16:19767291-19787421	inner
CUST_36237_PI429285431	5.3699665	P	4.18707	P	2.27032132393327	0	lncRNA	37486-1_{1..3000}	n344778|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_327|NULL|-1.3305700|-0.3589219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344778|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_327|NULL|-1.3305700|-0.3589219	chr15	 41576183	 41579182	+	NA	NA	NA	NA	CHP	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70chr15:41566183-41574085"	NA	inter
CUST_46753_PI429285431	5.205496	P	3.9318128	P	2.41778037533093	0	lncRNA	50903-1_{1..2872}	"gi|62632708|ref|NR_002211.1| Homo sapiens Meis homeobox 3 pseudogene 1 (MEIS3P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|62632708|ref|NR_002211.1| Homo sapiens Meis homeobox 3 pseudogene 1 (MEIS3P1), non-coding RNA"	Chr17	 15690164	 15693035	+	4213	NR_002211.1	NA	NA	NA	NA	NA	inter
CUST_28485_PI429285431	1.6517545	A	1.9811009	A	0.795896976049568	0	lncRNA	30152-1_{1..314}	n325827|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141968|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141968|0.1025320|-0.2168663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325827|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141968|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141968|0.1025320|-0.2168663	chr11	 63952208	 63952521	+	NA	NA	NA	NA	STIP1	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70chr11:63953587-63966718"	NA	inner
CUST_5444_PI429285431	0.9170818	A	0.9007517	A	1.0113834668901	0	lncRNA	5378-1_{1..691}	"transcript_id ""ENST00000563866.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563866.1"" | genecode_v17"	chr16	 18096663	 18097353	-	ENSG00000260242.1	ENST00000563866.1	CTA-481E9.3	CTA-481E9.3-001	NA	NA	NA	inter
CUST_13917_PI429285431	0.96185493	A	1.0109646	A	0.966532620925841	0	lncRNA	15565-1_{1..1005}	lnc-SLFNL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLFNL1-1:1	chr1	 41431275	 41432279	-	lnc-SLFNL1-1	lnc-SLFNL1-1:1	XLOC_000801	linc-CITED4	NA	NA	NA	inter
CUST_28316_PI429285431	5.583637	P	5.686237	P	0.931353009921002	0	lncRNA	29961-1_{1..778}	n325621|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045942|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045942|-1.0878000|-0.1112867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325621|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045942|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045942|-1.0878000|-0.1112867	chr13	113529477	113530254	+	NA	NA	NA	NA	ATP11A	NA	chr13:113519477-113541482	inner
CUST_51685_PI429285431	12.466876	P	12.083267	P	1.30460132600598	0	lncRNA	55247-1_{1..1598}	hg19_lincRNAsTranscripts_TCONS_l2_00011481 range=chr17:76481580-76488723 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011481 range=chr17:76481580-76488723 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 76481580	 76483177	-	NA	NA	NA	NA	DNAH17	NA	chr17:76471580-76498723	inner
CUST_48443_PI429285431	9.930743	P	9.855833	P	1.05329532592356	0	lncRNA	52297-1_{1..757}	hg19_lincRNAsTranscripts_TCONS_l2_00001638 range=chr1:178459067-178468784 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001638 range=chr1:178459067-178468784 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	178459067	178459823	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22374_PI429285431	1.2882967	A	1.4778333	A	0.876887336159373	0	lncRNA	23967-1_{1..369}	lnc-DHX38-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHX38-1:1	chr16	 72121196	 72121564	+	lnc-DHX38-1	lnc-DHX38-1:1	ENSG00000260252.1	RP11-384M15.3	TXNL4B	NA	chr16:72118756-72128215	inner
CUST_50255_PI429285431	9.106951	P	8.47738	P	1.54710487781197	0	lncRNA	53978-1_{1..784}	hg19_lincRNAsTranscripts_TCONS_l2_00029356 range=chr9:68427782-68454372 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029356 range=chr9:68427782-68454372 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 68427782	 68428565	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14888_PI429285431	2.407944	A	2.5134408	A	0.929484814271442	0	lncRNA	16552-1_{1..356}	lnc-GRHL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRHL2-2:1	chr8	102328747	102329102	+	lnc-GRHL2-2	lnc-GRHL2-2:1	XLOC_006890	linc-GRHL2-1	NA	NA	NA	inter
CUST_41562_PI429285431	0.9192579	A	0.9163152	A	1.00204180586075	0	lncRNA	42871-1_{1..110}	ENST00000384836 ncrna:miRNA chromosome:GRCh37:14:104583742:104583851:1 gene:ENSG00000207568 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384836 ncrna:miRNA chromosome:GRCh37:14:104583742:104583851:1 gene:ENSG00000207568 gene_biotype:miRNA transcript_biotype:miRNA	chr14	104583742	104583851	+	ENSG00000207568	ENST00000384836	NA	NA	ASPG	NA	chr14:104573742-104579046	inter
CUST_4976_PI429285431	0.9733129	A	0.935848	A	1.02630881404124	0	lncRNA	4920-1_{1..733}	"transcript_id ""ENST00000554862.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554862.1"" | genecode_v17"	chr14	 97925153	 97925885	+	ENSG00000246084.2	ENST00000554862.1	CTD-2506J14.1	CTD-2506J14.1-003	NA	NA	NA	inter
LNCA_21_P0010578	3.3229344	P	3.3484373	P	0.982478062992391	0	lncRNA	TCONS_l2_00000850	NA	NA	NA	NA	XLOC_l2_000641	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000641), lincRNA [TCONS_l2_00000850]"	chr1:224192444-224192503	hs|1q42.11	Agilent_HUMAN_G3V2	TCONS_l2_00000850	TCONS_l2_00000850	chr1	224192444	224192503	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39705_PI429285431	5.2273197	P	5.659548	P	0.741116217314199	0	lncRNA	40642-1_{1..3000}	n405572|NR_002729|lncRNA|Homosapiens||RefGeneNoncode|NR_002729||4.0029800|-0.2061064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405572|NR_002729|lncRNA|Homosapiens||RefGeneNoncode|NR_002729||4.0029800|-0.2061064	chr1	 17081400	 17084399	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41846_PI429285431	0.93911016	A	1.4974474	A	0.679084383021975	0	lncRNA	43489-1_{1..83}	ENST00000582187 ncrna:miRNA chromosome:GRCh37:14:37421514:37421596:-1 gene:ENSG00000266327 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582187 ncrna:miRNA chromosome:GRCh37:14:37421514:37421596:-1 gene:ENSG00000266327 gene_biotype:miRNA transcript_biotype:miRNA	chr14	 37421514	 37421596	-	ENSG00000266327	ENST00000582187	NA	NA	SLC25A21	NA	chr14:37411514-37431596	inner
CUST_29353_PI429285431	1.6460037	A	1.9883841	A	0.788738844146964	0	lncRNA	31105-1_{1..387}	n332610|AL049986|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000023888|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000023888|-1.3492800|-0.4180196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332610|AL049986|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000023888|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000023888|-1.3492800|-0.4180196	chr9	125702253	125702639	+	NA	NA	NA	NA	RABGAP1	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60chr9:125703288-125712640"	NA	inter
CUST_41834_PI429285431	0.9248748	A	1.0815424	A	0.897094828405476	0	lncRNA	43452-1_{1..84}	ENST00000385029 ncrna:miRNA chromosome:GRCh37:14:101493437:101493520:1 gene:ENSG00000207762 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385029 ncrna:miRNA chromosome:GRCh37:14:101493437:101493520:1 gene:ENSG00000207762 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101493437	101493520	+	ENSG00000207762	ENST00000385029	NA	NA	NA	NA	NA	inter
LNCA_21_P0002829	0.9963705	A	0.93027365	A	1.04688055807314	0	lncRNA	ENST00000427064	NA	NA	NA	NA	XLOC_002986	NA	ENST00000427064	NA	NA	"BROAD Institute lincRNA (XLOC_002986), lincRNA [TCONS_00005707]"	chr3:194553262-194553321	hs|3q29	Agilent_HUMAN_G3V2	ENST00000427064	ENST00000427064	chr3	194553262	194553321	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12468_PI429285431	1.5280787	A	0.9382747	A	1.50504226322402	0	lncRNA	14080-1_{1..255}	lnc-ADAM32-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAM32-1:1	chr8	 39192919	 39193173	+	lnc-ADAM32-1	lnc-ADAM32-1:1	XLOC_006777	linc-ADAM18-2	NA	NA	NA	inter
CUST_26525_PI429285431	1.11696	A	1.6421494	A	0.694867880235027	0	lncRNA	28032-1_{1..624}	lnc-B4GALT4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-B4GALT4-1:1	chr3	119041461	119042084	-	lnc-B4GALT4-1	lnc-B4GALT4-1:1	ENSG00000241155.1	ARHGAP31-AS1	ARHGAP31	NA	chr3:119031461-119051607	inner
CUST_32660_PI429285431	0.9158663	A	0.9032948	A	1.00875197632313	0	lncRNA	34311-1_{1..1347}	n339285|BC036646|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1717|NULL|-1.2277900|-0.3205739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n339285|BC036646|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1717|NULL|-1.2277900|-0.3205739	chr16	 73420706	 73422052	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39468_PI429285431	0.9893821	A	0.9807289	A	1.00601596484898	0	lncRNA	40411-1_{1..1021}	n387029|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wmx.1||1.0336700|-0.3146766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n387029|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wmx.1||1.0336700|-0.3146766	chr17	 48834760	 48835780	-	NA	NA	NA	NA	LUC7L3	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30chr17:48824760-48830072"	NA	inter
CUST_16419_PI429285431	0.9295128	A	0.9175636	A	1.00831694953732	0	lncRNA	18118-1_{1..212}	lnc-MAGEB10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAGEB10-1:1	chrX	 28069474	 28069685	+	lnc-MAGEB10-1	lnc-MAGEB10-1:1	XLOC_007946	linc-IL1RAPL1	NA	NA	NA	inter
CUST_7030_PI429285431	5.0257497	P	5.1869783	P	0.894263191471808	0	lncRNA	6975-3_{6001..7619}	"transcript_id ""ENST00000449605.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449605.1"" | genecode_v17"	chrX	 21917718	 21919336	+	ENSG00000231771.1	ENST00000449605.1	RP11-147O5.1	RP11-147O5.1-001	MBTPS2	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chrX:21901718-21903541"	NA	inter
CUST_19703_PI429285431	7.7476683	P	7.9037786	P	0.897441434936579	0	lncRNA	21360-1_{1..508}	lnc-RASA1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-RASA1-5:1	chr5	 87988644	 87989151	+	lnc-RASA1-5	lnc-RASA1-5:1	ENSG00000250555.1	CTC-467M3.2	NA	NA	NA	inter
CUST_50032_PI429285431	2.5867815	A	1.767816	A	1.76414054297793	0	lncRNA	53768-2_{3001..4298}	hg19_lincRNAsTranscripts_TCONS_l2_00028128 range=chr8:26235648-26240466 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028128 range=chr8:26235648-26240466 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 26238648	 26239945	-	NA	NA	NA	NA	PPP2R2A	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20chr8:26225648-26230196"	NA	inter
CUST_7602_PI429285431	0.9246979	A	0.9282914	A	0.997512275135742	0	lncRNA	9237-1_{1..1239}	lnc-SOX2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SOX2-1:3	chr3	181457357	181458595	+	lnc-SOX2-1	lnc-SOX2-1:3	ENSG00000242808	RP11-4B14.2	NA	NA	NA	inter
CUST_380_PI429201921	0.92953414	A	1.3172667	A	0.764329935127921	0	lncRNA	244-2_{3001..6000}	TC08002162.hg.1	TCONS_l2_00028034-XLOC_l2_014388 // Broad TUCP // linc-ZNF517 chr8:+:145925736-145934941 // chr8 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00028035-XLOC_l2_014388 // Broad TUCP // linc-ZNF517 chr8:+:145926088-145934575 // chr8 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00028036-XLOC_l2_014388 // Broad TUCP // linc-ZNF517 chr8:+:145931394-145932554 // chr8 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr8:+:145925736-145934941	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00028034-XLOC_l2_014388	linc-ZNF517	chr8	145925736	145934941	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7496_PI429285431	1.2881749	A	0.9572586	A	1.25781199597134	0	lncRNA	9136-1_{1..1220}	lnc-ALCAM-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ALCAM-2:1	chr3	104330774	104331993	+	lnc-ALCAM-2	lnc-ALCAM-2:1	ENSG00000256575	AC091804.1	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10"	NA	inter
CUST_17550_PI429285431	4.4740677	P	4.630463	P	0.897264165631562	0	lncRNA	19277-1_{1..744}	lnc-PIWIL4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIWIL4-1:1	chr11	 94373380	 94374123	+	lnc-PIWIL4-1	lnc-PIWIL4-1:1	XLOC_009252	linc-AMOTL1-3	NA	NA	NA	inter
LNCA_33_P3258712	9.251361	P	9.45834	P	0.866349466969805	0	lncRNA	XR_109353	XR_109353	XR_109353	100506676	Hs.660048	LOC100506676	uncharacterized LOC100506676	NA	THC2531435	NA	"PREDICTED: Homo sapiens hypothetical LOC100506676, transcript variant 2 (LOC100506676), miscRNA [XR_109353]"	chr17:5017618-5017677	hs|17p13.2	Agilent_HUMAN_G3V2	XR_109353	XR_109353	chr17	  5017618	  5017677	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15988_PI429285431	0.9219754	A	0.9151455	A	1.00474534960711	0	lncRNA	17686-2_{3001..6000}	lnc-ZNF207-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ZNF207-1:1	chr17	 30737851	 30740850	+	lnc-ZNF207-1	lnc-ZNF207-1:1	XLOC_012169	linc-PSMD11	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20"	NA	inter
CUST_45824_PI429285431	9.662705	P	8.860351	P	1.74394434535586	0	lncRNA	50158-1_{1..2449}	"gi|388240773|ref|NR_049750.1| Homo sapiens reticulon 3 (RTN3), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|388240773|ref|NR_049750.1| Homo sapiens reticulon 3 (RTN3), transcript variant 8, non-coding RNA"	Chr11	 63448922	 63451370	+	10313	NR_049750.1	NA	NA	NA	NA	NA	inter
CUST_44765_PI429285431	1.8279061	A	1.8362336	A	0.994244443896196	0	lncRNA	49308-1_{1..2018}	"gi|365733563|ref|NR_045674.1| Homo sapiens chloride intracellular channel 5 (CLIC5), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|365733563|ref|NR_045674.1| Homo sapiens chloride intracellular channel 5 (CLIC5), transcript variant 6, non-coding RNA"	Chr6	 45879360	 45881377	-	53405	NR_045674.1	NA	NA	NA	NA	NA	inter
CUST_30592_PI429285431	3.8138342	P	3.8324342	P	0.987190215191202	0	lncRNA	32374-1_{1..363}	n335884|X62962|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322558|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322558|2.8152000|-0.1220277	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335884|X62962|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322558|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322558|2.8152000|-0.1220277	chr14	106330798	106331160	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00321986	1.0874698	A	0.9255839	A	1.1187486178417	0	lncRNA	ENST00000415520	NA	NA	NA	NA	XLOC_l2_007876	NA	ENST00000415520	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007876), lincRNA [TCONS_l2_00015692]"	chr2:7203009-7202950	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000415520	ENST00000415520	chr2	  7202950	  7203009	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18061_PI429285431	0.9188841	A	0.9248823	A	0.995850995582041	0	lncRNA	19796-1_{1..614}	lnc-DIO3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DIO3.1-1:1	chr14	102100322	102100935	+	lnc-DIO3.1-1	lnc-DIO3.1-1:1	XLOC_010940	linc-PPP2R5C	NA	NA	NA	inter
CUST_9665_PI429285431	1.746883	A	1.5318096	A	1.16076296902256	0	lncRNA	11182-1_{1..893}	lnc-C11orf86-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C11orf86-1:1	chr11	 66778294	 66779186	+	lnc-C11orf86-1	lnc-C11orf86-1:1	XLOC_009176	linc-SYT12	NA	NA	NA	inter
CUST_42808_PI429285431	6.084499	P	6.5902653	P	0.704286190477025	0	lncRNA	45807-1_{1..87}	ENST00000363660 ncrna:snoRNA chromosome:GRCh37:19:50000977:50001063:1 gene:ENSG00000200530 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363660 ncrna:snoRNA chromosome:GRCh37:19:50000977:50001063:1 gene:ENSG00000200530 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	 50000977	 50001063	+	ENSG00000200530	ENST00000363660	NA	NA	RPL13A	NA	chr19:49990977-49995565	inter
CUST_21733_PI429285431	3.0004854	P	3.179358	P	0.883393057784459	0	lncRNA	23343-1_{1..412}	lnc-PCGF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PCGF1-1:1	chr2	 74726460	 74726871	-	lnc-PCGF1-1	lnc-PCGF1-1:1	ENSG00000258821.1	AC005041.17	TTC31	NA	chr2:74716460-74721691	inner
CUST_3259_PI429285431	0.92930484	A	0.92901653	A	1.00019986123322	0	lncRNA	3237-1_{1..489}	"transcript_id ""ENST00000517318.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517318.1"" | genecode_v17"	chr8	107277663	107278151	-	ENSG00000254021.1	ENST00000517318.1	RP11-778D12.2	RP11-778D12.2-001	OXR1	NA	chr8:107267663-107290969	inter
CUST_37992_PI429285431	5.278422	P	4.4795628	P	1.73972490846529	0	lncRNA	39079-1_{1..1068}	n346547|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2097|NULL|-1.3656000|-0.2685699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346547|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2097|NULL|-1.3656000|-0.2685699	chr5	180708366	180709433	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22250_PI429285431	9.523105	P	9.532872	P	0.993252896097641	0	lncRNA	23851-1_{1..738}	lnc-TUBB-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUBB-7:1	chr6	 30680465	 30681202	+	lnc-TUBB-7	lnc-TUBB-7:1	ENSG00000224328.1	MDC1-AS1	MDC1	"hg19_refFlat_MDC1:range=chr6_ssto_hap7:2000549-20152585'pad=0,hg19_refFlat_MDC1:range=chr6_ssto_hap7:2000549-20152585'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40;hg19_refFlat_MDC1:range=chr6_apd_hap1:1979886-19945955'pad=0,hg19_refFlat_MDC1:range=chr6_apd_hap1:1979886-19945955'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40;hg19_refFlat_MDC1:range=chr6_qbl_hap6:1961174-19758835'pad=0,hg19_refFlat_MDC1:range=chr6_qbl_hap6:1961174-19758835'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40;hg19_refFlat_MDC1:range=chr6:30668242-306829525'pad=0,hg19_refFlat_MDC1:range=chr6:30668242-306829525'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40;hg19_refFlat_MDC1:range=chr6_mcf_hap5:2050126-20648355'pad=0,hg19_refFlat_MDC1:range=chr6_mcf_hap5:2050126-20648355'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40;hg19_refFlat_MDC1:range=chr6_cox_hap2:2180311-21950215'pad=0,hg19_refFlat_MDC1:range=chr6_cox_hap2:2180311-21950215'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40;hg19_refFlat_MDC1:range=chr6_mann_hap4:2016337-20310465'pad=0,hg19_refFlat_MDC1:range=chr6_mann_hap4:2016337-20310465'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40;hg19_refFlat_MDC1:range=chr6_dbb_hap3:1961902-19766115'pad=0,hg19_refFlat_MDC1:range=chr6_dbb_hap3:1961902-19766115'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40chr6:30670465-30685458"	NA	inner
CUST_13775_PI429285431	1.0166764	A	1.087621	A	0.952014465487927	0	lncRNA	15418-1_{1..598}	lnc-SPP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SPP2-1:1	chr2	235017968	235018565	+	lnc-SPP2-1	lnc-SPP2-1:1	XLOC_001901	linc-SH3BP4-3	NA	NA	NA	inter
CUST_3330_PI429285431	0.9142406	A	1.3006642	A	0.765023727848013	0	lncRNA	3309-1_{1..706}	"transcript_id ""ENST00000524346.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524346.1"" | genecode_v17"	chr8	137543041	137543746	+	ENSG00000254101.1	ENST00000524346.1	RP11-30J20.1	RP11-30J20.1-001	NA	NA	NA	inter
CUST_31971_PI429285431	1.4248415	A	0.93007815	A	1.40908959859479	0	lncRNA	33694-1_{1..1746}	n338529|BC039113|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|928|NULL|-1.3128800|-0.3503696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338529|BC039113|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|928|NULL|-1.3128800|-0.3503696	chr1	218216846	218218591	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17491_PI429285431	6.5344195	P	7.143205	P	0.655748496592799	0	lncRNA	19218-1_{1..977}	lnc-FREM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FREM2-1:1	chr13	 39152866	 39153842	+	lnc-FREM2-1	lnc-FREM2-1:1	XLOC_010352	linc-FREM2	NA	NA	NA	inter
CUST_14046_PI429285431	1.0345943	A	0.9099221	A	1.09025998257473	0	lncRNA	15693-1_{1..535}	lnc-ADCY7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ADCY7-2:1	chr16	 50442152	 50442686	+	lnc-ADCY7-2	lnc-ADCY7-2:1	XLOC_011716	linc-NKD1	NA	NA	NA	inter
LNCA_21_P0009863	3.488292	P	3.2205427	P	1.20392815405205	0	lncRNA	ENST00000437350	NA	NA	NA	NA	XLOC_013579	NA	ENST00000437350	NA	NA	"BROAD Institute lincRNA (XLOC_013579), lincRNA [TCONS_00027959]"	chr20:55171474-55171533	hs|20q13.31	Agilent_HUMAN_G3V2	ENST00000437350	ENST00000437350	chr20	 55171474	 55171533	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40686_PI429285431	2.7344697	A	2.7743778	A	0.972716907725574	0	lncRNA	41421-1_{1..548}	n410244|NR_037172_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037172_5||-1.2969700|-0.2661115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410244|NR_037172_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037172_5||-1.2969700|-0.2661115	chr6	  3463422	  3463969	-	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60chr6:3453422-3456793"	NA	inter
CUST_1042_PI429285431	0.92110634	A	0.9171654	A	1.00273538580913	0	lncRNA	1032-1_{1..424}	"transcript_id ""ENST00000445332.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445332.1"" | genecode_v17"	chr2	118595320	118595743	+	ENSG00000236255.1	ENST00000445332.1	AC009404.2	AC009404.2-001	DDX18	NA	chr2:118585320-118589953	inter
CUST_41375_PI429285431	5.775705	P	5.816268	P	0.972275450786438	0	lncRNA	42464-1_{1..100}	ENST00000585069 ncrna:miRNA chromosome:GRCh37:7:43190494:43190593:1 gene:ENSG00000264069 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585069 ncrna:miRNA chromosome:GRCh37:7:43190494:43190593:1 gene:ENSG00000264069 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 43190494	 43190593	+	ENSG00000264069	ENST00000585069	NA	NA	HECW1	NA	chr7:43180494-43200593	inner
CUST_18861_PI429285431	4.1022453	P	4.668931	P	0.675166065626048	0	lncRNA	20553-1_{1..769}	lnc-C7orf23-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C7orf23-1:2	chr7	 86781066	 86781834	-	lnc-C7orf23-1	lnc-C7orf23-1:2	ENSG00000224046	AC005076.5	DMTF1	NA	chr7:86781677-86791598	inter
CUST_223_PI429285431	5.3924026	P	5.7690873	P	0.770205483717409	0	lncRNA	213-1_{1..354}	"transcript_id ""ENST00000455247.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455247.1"" | genecode_v17"	chr1	 46921495	 46921848	+	ENSG00000225667.1	ENST00000455247.1	LINC00505	LINC00505-001	NA	NA	NA	inter
CUST_19133_PI429285431	0.9176274	A	0.92214215	A	0.996875505191949	0	lncRNA	20813-1_{1..3000}	lnc-MYB-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYB-6:1	NA	NA	     2999	NA	NA	NA	NA	NA	NA	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00"	NA	Unknown
CUST_51711_PI429285431	4.4159513	P	4.764186	P	0.785544712567463	0	lncRNA	55268-1_{1..988}	hg19_lincRNAsTranscripts_TCONS_l2_00011966 range=chr18:11619400-11625838 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011966 range=chr18:11619400-11625838 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 11619400	 11620387	-	NA	NA	NA	NA	AMAC1L1	NA	chr18:11609595-11610611	inter
CUST_27841_PI429285431	2.2677126	A	3.221153	P	0.516399532615713	0	lncRNA	29431-1_{1..874}	n325073|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077921|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077921|-1.0382200|-0.3125140	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325073|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077921|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077921|-1.0382200|-0.3125140	chr20	  7075113	  7075986	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20"	NA	inter
CUST_40088_PI429285431	5.9498634	P	5.6737833	P	1.21090031258846	0	lncRNA	40935-1_{1..2155}	n407440|NR_026898|lncRNA|Homosapiens||RefGeneNoncode|NR_026898||3.7320300|-0.1873842	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n407440|NR_026898|lncRNA|Homosapiens||RefGeneNoncode|NR_026898||3.7320300|-0.1873842	chrX	153626570	153628724	+	NA	NA	NA	NA	TAZ	NA	chrX:153639877-153640680	inner
CUST_49620_PI429285431	5.703898	P	6.2547193	P	0.682631408119332	0	lncRNA	53406-1_{1..2882}	hg19_lincRNAsTranscripts_TCONS_l2_00025638 range=chr7:6677068-6693469 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025638 range=chr7:6677068-6693469 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  6677068	  6679949	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25941_PI429285431	3.4808419	P	4.2706957	P	0.578402703224089	0	lncRNA	27460-1_{1..511}	lnc-ZNF395-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZNF395-1:1	chr8	 28277408	 28277918	-	lnc-ZNF395-1	lnc-ZNF395-1:1	ENSG00000254370.1	RP11-181B11.1	FBXO16	NA	chr8:28285929-28287572	inter
CUST_23554_PI429285431	0.9091549	A	0.9155821	A	0.995554913213846	0	lncRNA	25121-1_{1..562}	lnc-FBXW8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FBXW8-2:1	chr12	117894714	117895275	+	lnc-FBXW8-2	lnc-FBXW8-2:1	ENSG00000255686.1	RP11-227B21.2	KSR2	NA	chr12:117890817-117904791	inner
LNCA_21_P0014272	0.9260362	A	1.859817	A	0.523484672087098	0	lncRNA	XR_109069	XR_109069	XR_109069	NA	NA	LOC100506352	uncharacterized LOC100506352	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506352 (LOC100506352), miscRNA [XR_109069]"	chr11:13020902-13020843	hs|11p15.2	Agilent_HUMAN_G3V2	XR_109069	XR_109069	chr11	 13020843	 13020902	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4943_PI429285431	1.1813866	A	2.2001483	A	0.493539787618799	0	lncRNA	4887-1_{1..495}	"transcript_id ""ENST00000556673.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556673.1"" | genecode_v17"	chr14	 88490953	 88491447	+	ENSG00000258867.1	ENST00000556673.1	RP11-300J18.3	RP11-300J18.3-008	GPR65	NA	chr14:88480953-88481155	inter
CUST_27375_PI429285431	0.92513067	A	0.9140964	A	1.00767769665728	0	lncRNA	28937-1_{1..567}	n324536|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040212|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040212|-1.3723700|-0.1407174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324536|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040212|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040212|-1.3723700|-0.1407174	chr6	 33989838	 33990404	+	NA	NA	NA	NA	GRM4	NA	chr6:33989628-34010438	inner
LNCA_21_P0014205	4.584513	P	4.5213275	P	1.04477008951474	0	lncRNA	ENST00000423166	XR_108831	XR_108831	NA	NA	WBSCR22	Williams Beuren syndrome chromosome region 22	ENST00000423166	THC2567537	GO:0008150|GO:0008168|GO:0008152|GO:0005634|GO:0005575|GO:0032259|GO:0016740	"PREDICTED: Homo sapiens hypothetical LOC100505484 (LOC100505484), miscRNA [XR_108831]"	chr7:73119328-73119387	hs|7q11.23	Agilent_HUMAN_G3V2	ENST00000423166	ENST00000423166	chr7	 73119328	 73119387	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23640_PI429285431	0.90201646	A	0.9143692	A	0.991474284907557	0	lncRNA	25205-1_{1..581}	lnc-RPS12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS12-1:1	chr6	133074987	133075567	+	lnc-RPS12-1	lnc-RPS12-1:1	ENSG00000234484.1	RP1-55C23.7	VNN2	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_VNN2:range=chr6:133065439-1330790225'pad=0,hg19_refFlat_VNN2:range=chr6:133065439-1330790225'pad=0 3'pad=0 strand=- repeatMasking=none,-27.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-18.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_VNN2:range=chr6:133065439-1330788635'pad=0,hg19_refFlat_VNN2:range=chr6:133065439-1330788635'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90chr6:133065009-133084598"	NA	inner
CUST_21416_PI429285431	3.5948272	P	2.85415	A	1.67096000220585	0	lncRNA	23036-1_{1..650}	lnc-GINS1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GINS1-1:3	chr20	 25657572	 25658221	+	lnc-GINS1-1	lnc-GINS1-1:3	ENSG00000213742.2	RP4-694B14.5	ZNF337	"hg19_refFlat_ZNF337:range=chr20:25655668-256670535'pad=0,hg19_refFlat_ZNF337:range=chr20:25655668-256670535'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr20:25650496-25667688"	NA	inner
CUST_11700_PI429285431	3.7161946	P	4.1409564	P	0.744961720293123	0	lncRNA	13278-1_{1..1167}	lnc-AC011298.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC011298.2.1-1:1	chr2	241628019	241629185	+	lnc-AC011298.2.1-1	lnc-AC011298.2.1-1:1	XLOC_001920	linc-AQP12A	AQP12B	NA	chr2:241618019-241622317	inter
CUST_28703_PI429285431	0.9031008	A	0.9056184	A	0.998256454402925	0	lncRNA	30403-1_{1..418}	n326092|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046514|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046514|-1.2961500|-0.4287459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326092|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046514|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046514|-1.2961500|-0.4287459	chr10	  4683294	  4683711	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7756_PI429285431	1.1158987	A	0.90571606	A	1.15683462573582	0	lncRNA	9383-1_{1..572}	lnc-METTL15-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-METTL15-4:2	chr11	 27679788	 27680359	+	lnc-METTL15-4	lnc-METTL15-4:2	ENSG00000245573	AC104563.1	BDNF	"hg19_refFlat_BDNF:range=chr11:27679368-277209525'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277209525'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BDNF:range=chr11:27679368-277225835'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277225835'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BDNF:range=chr11:27679368-277429615'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277429615'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BDNF:range=chr11:27679368-276801115'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-276801115'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BDNF:range=chr11:27679368-276958315'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-276958315'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80chr11:27676440-27689880"	NA	inter
CUST_7836_PI429285431	1.2372915	A	0.92501915	A	1.24166186863495	0	lncRNA	9460-1_{1..2064}	lnc-A2M-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-A2M-1:1	chr12	  9216864	  9218927	-	lnc-A2M-1	lnc-A2M-1:1	ENSG00000214851	C12orf33	A2M	NA	chr12:9220304-9227672	inter
LNCA_21_P0003092	4.2310157	P	4.381493	P	0.900952342992031	0	lncRNA	XR_110395	XR_110395	XR_110395	NA	NA	LOC440993	uncharacterized LOC440993	ENST00000445707	THC2474701	NA	"PREDICTED: Homo sapiens hypothetical LOC440993 (LOC440993), miscRNA [XR_110395]"	chr3:195435292-195435351	hs|3q29	Agilent_HUMAN_G3V2	XR_110395	XR_110395	chr3	195435292	195435351	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45040_PI429285431	3.3474908	P	1.0685999	A	4.85304722824579	0	lncRNA	49537-1_{1..2119}	"gi|394025768|ref|NR_073004.1| Homo sapiens dihydrouridine synthase 4-like (S. cerevisiae) (DUS4L), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|394025768|ref|NR_073004.1| Homo sapiens dihydrouridine synthase 4-like (S. cerevisiae) (DUS4L), transcript variant 5, non-coding RNA"	Chr7	107204402	107206520	+	11062	NR_073004.1	NA	NA	NA	NA	NA	inter
CUST_46135_PI429285431	1.0416288	M	1.022151	A	1.01359253195318	0	lncRNA	50389-2_{3001..3780}	"gi|300068994|ref|NR_033950.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|300068994|ref|NR_033950.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_033950.1	NA	NA	NA	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	Unknown
CUST_22723_PI429285431	0.913029	A	0.91596335	A	0.997968130617772	0	lncRNA	24307-1_{1..1128}	lnc-PCDH19-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PCDH19-1:4	chrX	 96819379	 96820506	-	lnc-PCDH19-1	lnc-PCDH19-1:4	ENSG00000236256.4	DIAPH2-AS1	DIAPH2	NA	chrX:96809379-96829492	inner
CUST_17986_PI429285431	1.4346846	A	1.4674453	A	0.977547898951568	0	lncRNA	19719-1_{1..246}	lnc-EPB41-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPB41-1:2	chr1	 29462262	 29462507	+	lnc-EPB41-1	lnc-EPB41-1:2	XLOC_000111	linc-PTPRU-2	NA	NA	NA	inter
CUST_14011_PI429285431	4.4085097	P	4.2338696	P	1.12868280432809	0	lncRNA	15659-1_{1..234}	lnc-RP11-1396O13.13.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-1396O13.13.1-1:1	chr4	  9388003	  9388236	-	lnc-RP11-1396O13.13.1-1	lnc-RP11-1396O13.13.1-1:1	XLOC_003878	linc-HMX1-3	NA	NA	NA	inter
CUST_6624_PI429285431	0.92381257	A	1.1166239	A	0.874899173307735	0	lncRNA	6570-1_{1..346}	"transcript_id ""ENST00000447206.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447206.1"" | genecode_v17"	chr20	  1784662	  1785007	-	ENSG00000230839.1	ENST00000447206.1	RP5-968J1.1	RP5-968J1.1-001	NA	NA	NA	inter
CUST_23382_PI429285431	1.2958714	A	1.227527	A	1.04851274648985	0	lncRNA	24950-1_{1..499}	lnc-KLHL25-11:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL25-11:1	chr15	 87174288	 87174786	-	lnc-KLHL25-11	lnc-KLHL25-11:1	ENSG00000259734.1	RP11-182L7.1	AGBL1	NA	chr15:87164288-87184367	inner
CUST_42982_PI429285431	1.4990264	A	1.4791012	A	1.01390690998088	0	lncRNA	46136-1_{1..91}	ENST00000408684 ncrna:snoRNA chromosome:GRCh37:12:13124987:13125077:1 gene:ENSG00000221611 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408684 ncrna:snoRNA chromosome:GRCh37:12:13124987:13125077:1 gene:ENSG00000221611 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 13124987	 13125077	+	ENSG00000221611	ENST00000408684	NA	NA	HEBP1	NA	chr12:13127798-13135077	inter
CUST_13540_PI429285431	0.9202898	A	0.9114276	A	1.00616171468605	0	lncRNA	15179-1_{1..315}	lnc-TAF1L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TAF1L-2:1	chr9	 32705283	 32705597	-	lnc-TAF1L-2	lnc-TAF1L-2:1	XLOC_007665	linc-TAF1L-2	NA	NA	NA	inter
CUST_4454_PI429285431	0.91746867	A	1.3027612	A	0.765623740079914	0	lncRNA	4404-1_{1..1731}	"transcript_id ""ENST00000543611.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000543611.1"" | genecode_v17"	chr12	123171672	123173402	+	ENSG00000256249.1	ENST00000543611.1	RP11-324E6.6	RP11-324E6.6-001	HCAR3	"hg19_refFlat_HCAR1:range=chr12:123213846-1232148865'pad=0,hg19_refFlat_HCAR1:range=chr12:123213846-1232148865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_HCAR2:range=chr12:123186739-1231878305'pad=0,hg19_refFlat_HCAR2:range=chr12:123186739-1231878305'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10;hg19_refFlat_HCAR3:range=chr12:123200121-1232012845'pad=0,hg19_refFlat_HCAR3:range=chr12:123200121-1232012845'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10chr12:123199303-123201439"	NA	inner
CUST_3244_PI429285431	3.266169	P	3.4203632	P	0.898634154060391	0	lncRNA	3223-1_{1..644}	"transcript_id ""ENST00000519844.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519844.1"" | genecode_v17"	chr8	101393488	101394131	-	ENSG00000253824.1	ENST00000519844.1	KB-173C10.2	KB-173C10.2-001	NA	NA	NA	inter
CUST_36828_PI429285431	0.9616827	A	1.4350535	A	0.720279725070204	0	lncRNA	37996-1_{1..3000}	n345304|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_853|NULL|-1.3761500|-0.3435426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n345304|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_853|NULL|-1.3761500|-0.3435426	chr15	 50648294	 50651293	+	NA	NA	NA	NA	GABPB1	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.52;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00chr15:50638294-50647605"	NA	inter
CUST_48644_PI429285431	5.1306806	P	5.2152596	P	0.943059694698492	0	lncRNA	52491-1_{1..392}	hg19_lincRNAsTranscripts_TCONS_l2_00014689 range=chr2:91888052-91894162 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014689 range=chr2:91888052-91894162 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 91888052	 91888443	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48780_PI429285431	0.9056239	A	0.91123426	A	0.996118746394991	0	lncRNA	52618-1_{1..400}	hg19_lincRNAsTranscripts_TCONS_l2_00015075 range=chr2:201591804-201599895 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015075 range=chr2:201591804-201599895 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	201591804	201592203	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38038_PI429285431	8.169008	P	8.07802	P	1.06509934410928	0	lncRNA	39120-2_{3001..3596}	n377610|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029989||0.5256780|-0.2246867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n377610|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029989||0.5256780|-0.2246867	chr6	  4079359	  4079954	+	NA	NA	NA	NA	C6orf201	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_FAM217A:range=chr6:4068930-40776485'pad=0,hg19_refFlat_FAM217A:range=chr6:4068930-40776485'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.89;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50chr6:4079440-4089955"	NA	inner
CUST_48665_PI429285431	0.919444	A	0.91511685	A	1.0030038543785	0	lncRNA	52509-1_{1..2332}	hg19_lincRNAsTranscripts_TCONS_l2_00014708 range=chr2:96479134-96481990 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014708 range=chr2:96479134-96481990 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 96479134	 96481465	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45719_PI429285431	3.5703957	P	3.624605	P	0.963122158258255	0	lncRNA	50085-2_{3001..6000}	"gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	Chr11	  2632558	  2635557	-	10984	NR_002728.3	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.02;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0,hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_16204_PI429285431	0.91698366	A	0.9198482	A	0.998016422071491	0	lncRNA	17910-1_{1..839}	lnc-MCCC2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MCCC2-2:1	chr5	 70966298	 70967136	+	lnc-MCCC2-2	lnc-MCCC2-2:1	XLOC_004420	linc-CARTPT	NA	NA	NA	inter
CUST_1470_PI429285431	0.96660495	A	0.930753	A	1.02516202991178	0	lncRNA	1458-1_{1..3000}	"transcript_id ""ENST00000563865.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563865.1"" | genecode_v17"	chr3	139397462	139400461	-	ENSG00000261763.1	ENST00000563865.1	RP11-442N1.2	RP11-442N1.2-001	NMNAT3	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30chr3:139387462-139396885"	NA	inter
CUST_11384_PI429285431	2.2462955	A	1.1502793	A	2.13763598576823	0	lncRNA	12949-1_{1..751}	lnc-IFLTD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IFLTD1-1:1	chr12	 25538558	 25539308	-	lnc-IFLTD1-1	lnc-IFLTD1-1:1	XLOC_010031	linc-KRAS	NA	NA	NA	inter
CUST_44071_PI429285431	6.3081512	P	5.7668486	P	1.45528589251042	0	lncRNA	48741-2_{3001..3159}	"gi|300388184|ref|NR_034059.1| Homo sapiens proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 (PSMD1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300388184|ref|NR_034059.1| Homo sapiens proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 (PSMD1), transcript variant 3, non-coding RNA"	Chr2	231924578	231924736	+	5707	NR_034059.1	NA	NA	NA	NA	NA	inter
CUST_47254_PI429285431	0.9185907	A	0.9299388	A	0.992164951744865	0	lncRNA	51326-1_{1..469}	"gi|404247485|ref|NR_073152.1| Homo sapiens defensin, beta 119 (DEFB119), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|404247485|ref|NR_073152.1| Homo sapiens defensin, beta 119 (DEFB119), transcript variant 6, non-coding RNA"	Chr20	 29964966	 29965434	-	245932	NR_073152.1	NA	NA	NA	NA	NA	inter
CUST_39106_PI429285431	2.6674542	A	2.8802357	A	0.862872018908515	0	lncRNA	40082-1_{1..1405}	n385658|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004baa.1||-1.1791500|-0.2048449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385658|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004baa.1||-1.1791500|-0.2048449	chr9	102128680	102130084	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40383_PI429285431	1.3915776	A	1.2154454	A	1.12985074263436	0	lncRNA	41177-1_{1..595}	n409209|NR_033375|lncRNA|Homosapiens||RefGeneNoncode|NR_033375||-1.1576400|-0.2606478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n409209|NR_033375|lncRNA|Homosapiens||RefGeneNoncode|NR_033375||-1.1576400|-0.2606478	chr14	106744268	106744862	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26826_PI429285431	1.2648011	A	1.0768617	A	1.13913552714927	0	lncRNA	28340-1_{1..1180}	n323896|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060654|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060654|-1.1207200|-0.3227268	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323896|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060654|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060654|-1.1207200|-0.3227268	chrX	 38514527	 38515706	+	NA	NA	NA	NA	TSPAN7	NA	chrX:38504527-38548172	inner
CUST_13414_PI429285431	0.9292315	A	1.9672879	A	0.486983096025344	0	lncRNA	15052-1_{1..421}	lnc-SLIT3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLIT3-1:1	chr5	169010387	169010807	-	lnc-SLIT3-1	lnc-SLIT3-1:1	XLOC_005076	linc-SLIT3	CCDC99	NA	chr5:169010638-169020607	inter
CUST_34458_PI429285431	0.9147751	A	0.92327064	A	0.994128644574808	0	lncRNA	35932-1_{1..1039}	n341332|AL359604|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3801|NULL|-1.0477200|-0.3708378	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341332|AL359604|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3801|NULL|-1.0477200|-0.3708378	chr7	135362705	135363743	+	NA	NA	NA	NA	SLC13A4	NA	chr7:135365985-135373712	inter
CUST_27844_PI429285431	5.5302205	P	6.0301676	P	0.707132709489802	0	lncRNA	29434-1_{1..1484}	n325076|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077916|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077916|-0.9686970|-0.4130562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325076|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077916|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077916|-0.9686970|-0.4130562	chr20	  6375369	  6376852	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9695_PI429285431	0.928542	A	0.9217565	A	1.00471442830648	0	lncRNA	11210-1_{1..257}	lnc-RBMY1B-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RBMY1B-1:5	chrY	 23314725	 23314981	+	lnc-RBMY1B-1	lnc-RBMY1B-1:5	XLOC_008299	linc-RBMY1B	NA	NA	NA	inter
CUST_47311_PI429285431	0.91974896	A	1.3874191	A	0.723131466256859	0	lncRNA	51372-1_{1..615}	"gi|389565506|ref|NR_051976.1| Homo sapiens long intergenic non-protein coding RNA 651 (LINC00651), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|389565506|ref|NR_051976.1| Homo sapiens long intergenic non-protein coding RNA 651 (LINC00651), non-coding RNA"	Chr20	 48657244	 48657858	-	100887755	NR_051976.1	NA	NA	NA	NA	NA	inter
CUST_4466_PI429285431	2.035533	A	3.258565	A	0.428381475473724	0	lncRNA	4416-1_{1..585}	"transcript_id ""ENST00000543922.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000543922.1"" | genecode_v17"	chr12	125634604	125635188	+	ENSG00000256814.1	ENST00000543922.1	RP11-158L12.5	RP11-158L12.5-001	AACS	NA	chr12:125624604-125627871	inter
CUST_44955_PI429285431	8.45543	P	8.122785	P	1.25932006439495	0	lncRNA	49466-1_{1..1828}	"gi|261490650|ref|NR_029404.1| Homo sapiens tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide pseudogene (LOC649395), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|261490650|ref|NR_029404.1| Homo sapiens tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide pseudogene (LOC649395), non-coding RNA"	Chr7	 63894071	 63895898	+	649395	NR_029404.1	NA	NA	NA	NA	NA	inter
CUST_9778_PI429285431	0.9170717	A	0.9105056	A	1.00456164647891	0	lncRNA	11295-1_{1..823}	lnc-ARHGAP6-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGAP6-1:4	chrX	 11125021	 11125843	-	lnc-ARHGAP6-1	lnc-ARHGAP6-1:4	XLOC_008111	linc-MID1	HCCS	NA	chrX:11129406-11135110	inter
CUST_46194_PI429285431	1.6539044	A	2.018212	A	0.77684161911362	0	lncRNA	50440-1_{1..531}	"gi|388596665|ref|NR_046999.1| Homo sapiens long intergenic non-protein coding RNA 366 (LINC00366), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388596665|ref|NR_046999.1| Homo sapiens long intergenic non-protein coding RNA 366 (LINC00366), non-coding RNA"	Chr13	 39141861	 39142391	+	100874147	NR_046999.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80"	NA	inter
CUST_13732_PI429285431	6.0238347	P	6.250582	P	0.85455941094866	0	lncRNA	15375-1_{1..506}	lnc-ANGPTL2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANGPTL2-2:3	chr9	129375728	129376233	-	lnc-ANGPTL2-2	lnc-ANGPTL2-2:3	XLOC_007855	linc-MAPKAP1-3	LMX1B	NA	chr9:129376722-129385978	inter
CUST_37781_PI429285431	5.3871856	P	5.425048	P	0.974097170629347	0	lncRNA	38880-1_{1..819}	n346294|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1844|NULL|-1.3334700|-0.1133253	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346294|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1844|NULL|-1.3334700|-0.1133253	chr22	 20390275	 20391093	-	NA	NA	NA	NA	TMEM191B	NA	chr22:20380275-20380440	inter
CUST_16077_PI429285431	13.087123	P	13.027785	P	1.04198752115451	0	lncRNA	17780-1_{1..437}	lnc-C1orf222-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf222-2:2	chr1	  1981307	  1981743	-	lnc-C1orf222-2	lnc-C1orf222-2:2	XLOC_000676	linc-KIAA1751-2	PRKCZ	NA	chr1:1981909-1991509	inter
CUST_23898_PI429285431	6.6536245	P	6.958493	P	0.809515999640595	0	lncRNA	25455-1_{1..2060}	lnc-TBX15-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TBX15-2:1	chr1	119605477	119607536	-	lnc-TBX15-2	lnc-TBX15-2:1	ENSG00000224238.1	WARS2-IT1	WARS2	"hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0,hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10chr1:119595477-119617408"	NA	inner
CUST_45089_PI429285431	13.121697	P	13.037676	P	1.05996821227852	0	lncRNA	49573-1_{1..764}	"gi|374671779|ref|NR_046269.1| Homo sapiens single-stranded DNA binding protein 1, mitochondrial (SSBP1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374671779|ref|NR_046269.1| Homo sapiens single-stranded DNA binding protein 1, mitochondrial (SSBP1), transcript variant 6, non-coding RNA"	Chr7	141438121	141438884	+	6742	NR_046269.1	NA	NA	NA	NA	NA	inter
CUST_28392_PI429285431	1.101918	A	0.99254453	A	1.07875965371552	0	lncRNA	30046-1_{1..348}	n325709|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045193|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045193|-1.3730400|-0.5620992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325709|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045193|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045193|-1.3730400|-0.5620992	chr13	 62655234	 62655581	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35226_PI429285431	0.91874254	A	0.9382501	A	0.986569396111981	0	lncRNA	36626-1_{1..1996}	n342216|BC066972|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4706|NULL|0.4162870|-0.2692259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342216|BC066972|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4706|NULL|0.4162870|-0.2692259	chr15	 37090796	 37092791	-	NA	NA	NA	NA	C15orf41	NA	chr15:37080796-37102449	inter
CUST_48538_PI429285431	0.94526374	A	0.97601575	A	0.978909904253616	0	lncRNA	52387-1_{1..514}	hg19_lincRNAsTranscripts_TCONS_l2_00014768 range=chr2:108785875-108801131 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014768 range=chr2:108785875-108801131 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	108785875	108786388	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50044_PI429285431	2.0686488	A	1.5251597	A	1.45749314697872	0	lncRNA	53780-1_{1..897}	hg19_lincRNAsTranscripts_TCONS_l2_00028190 range=chr8:48012211-48041943 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028190 range=chr8:48012211-48041943 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 48012211	 48013107	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44453_PI429285431	0.95542914	A	1.1288445	A	0.886740970695135	0	lncRNA	49058-2_{3001..3898}	"gi|359279887|ref|NR_045581.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 10, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|359279887|ref|NR_045581.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 10, non-coding RNA"	Chr4	159445866	159446763	+	59350	NR_045581.1	NA	NA	NA	NA	NA	inter
CUST_45599_PI429285431	2.4968984	A	1.6626508	A	1.78292695724229	0	lncRNA	49987-2_{3001..5386}	"gi|399498579|ref|NR_073073.1| Homo sapiens transcription factor A, mitochondrial (TFAM), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|399498579|ref|NR_073073.1| Homo sapiens transcription factor A, mitochondrial (TFAM), transcript variant 3, non-coding RNA"	Chr10	 60147903	 60150288	+	7019	NR_073073.1	NA	NA	NA	NA	NA	inter
CUST_11469_PI429285431	1.1208667	A	0.9824205	A	1.10071898959654	0	lncRNA	13035-1_{1..338}	lnc-HOOK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOOK1-1:1	chr1	 60542842	 60543179	+	lnc-HOOK1-1	lnc-HOOK1-1:1	XLOC_000223	linc-NFIA-4	C1orf87	NA	chr1:60532842-60539442	inter
CUST_9964_PI429285431	1.1350734	A	1.2470329	A	0.925330403974751	0	lncRNA	11488-1_{1..414}	lnc-AL445989.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL445989.1-3:1	chr13	 63671473	 63671886	+	lnc-AL445989.1-3	lnc-AL445989.1-3:1	XLOC_010410	linc-C13orf34-15	NA	NA	NA	inter
LNCA_21_P0003889	8.390409	P	8.390875	P	0.999677045574871	0	lncRNA	TCONS_00009024	NA	NA	NA	NA	XLOC_003872	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003872), lincRNA [TCONS_00009024]"	chr4:7105043-7099096	hs|4p16.1	Agilent_HUMAN_G3V2	TCONS_00009024	TCONS_00009024	chr4	  7099096	  7105043	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46158_PI429285431	12.589457	P	11.119274	P	2.77057034951752	0	lncRNA	50407-1_{1..1294}	"gi|394025690|ref|NR_073008.1| Homo sapiens cyclin-dependent kinase 2 associated protein 1 (CDK2AP1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|394025690|ref|NR_073008.1| Homo sapiens cyclin-dependent kinase 2 associated protein 1 (CDK2AP1), transcript variant 5, non-coding RNA"	Chr12	123745517	123746810	-	8099	NR_073008.1	NA	NA	NA	NA	NA	inter
CUST_35605_PI429285431	0.92336035	A	1.2669406	A	0.788083144328153	0	lncRNA	37018-1_{1..1626}	n342742|AK057910|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5245|NULL|-0.9745710|-0.1760941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342742|AK057910|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5245|NULL|-0.9745710|-0.1760941	chr11	  1594476	  1596101	+	NA	NA	NA	NA	DUSP8	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80chr11:1584476-1593150"	NA	inner
LNCA_21_P0013112	3.6528563	P	3.7799342	P	0.91568424164549	0	lncRNA	TCONS_l2_00024982	NA	NA	NA	NA	XLOC_l2_013162	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013162), lincRNA [TCONS_l2_00024982]"	chr6:150321993-150321934	hs|6q25.1	Agilent_HUMAN_G3V2	TCONS_l2_00024982	TCONS_l2_00024982	chr6	150321934	150321993	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5034_PI429285431	6.4351873	P	6.6846504	P	0.841209413698828	0	lncRNA	4974-1_{1..265}	"transcript_id ""ENST00000556035.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556035.1"" | genecode_v17"	chr14	101542642	101542906	-	ENSG00000230805.2	ENST00000556035.1	AL132709.1	AL132709.1-005	NA	NA	NA	inter
CUST_36207_PI429285431	1.8972514	A	2.0424159	A	0.904276263651279	0	lncRNA	37463-1_{1..2057}	n344752|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_301|NULL|-1.5086200|-0.3645808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344752|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_301|NULL|-1.5086200|-0.3645808	chr5	148236884	148238940	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38213_PI429285431	8.339893	P	8.251197	P	1.06340857129253	0	lncRNA	39279-1_{1..3000}	n381577|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lkw.1||0.5141180|-0.1884683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381577|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lkw.1||0.5141180|-0.1884683	chr10	133810241	133813240	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011186	2.5037415	A	2.0109053	A	1.40720859529766	0	lncRNA	TCONS_l2_00007209	NA	NA	NA	NA	XLOC_l2_003992	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003992), lincRNA [TCONS_l2_00007209]"	chr13:52767254-52763999	hs|13q14.3	Agilent_HUMAN_G3V2	TCONS_l2_00007209	TCONS_l2_00007209	chr13	 52763999	 52767254	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11353_PI429285431	0.9194591	A	0.929897	A	0.99279110865781	0	lncRNA	12917-1_{1..621}	lnc-SLC11A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC11A2-1:1	chr12	 51366269	 51366889	-	lnc-SLC11A2-1	lnc-SLC11A2-1:1	XLOC_010077	linc-FAM186A-2	SLC11A2	NA	chr12:51373566-51376728	inter
CUST_23219_PI429285431	6.5262856	P	6.7404146	P	0.862066459048603	0	lncRNA	24791-1_{1..840}	lnc-LPO-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LPO-1:8	chr17	 56492827	 56493666	+	lnc-LPO-1	lnc-LPO-1:8	ENSG00000265148.1	RP5-1171I10.4	RNF43	"hg19_refFlat_RNF43:range=chr17:56432304-564929385'pad=0,hg19_refFlat_RNF43:range=chr17:56432304-564929385'pad=0 3'pad=0 strand=- repeatMasking=none,-102.10chr17:56482827-56494931"	NA	inner
CUST_16274_PI429285431	1.0892954	A	1.5020797	A	0.751172264227633	0	lncRNA	17978-2_{3001..3852}	lnc-BBS12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BBS12-1:1	chr4	123628559	123629410	+	lnc-BBS12-1	lnc-BBS12-1:1	XLOC_003677	linc-BBS12-1	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70"	NA	inter
CUST_21262_PI429285431	3.7730842	P	3.7055023	P	1.0479587279978	0	lncRNA	22887-1_{1..462}	lnc-MAP1LC3C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-MAP1LC3C-1:1	chr1	242373671	242374132	-	lnc-MAP1LC3C-1	lnc-MAP1LC3C-1:1	ENSG00000232689.1	RP11-561I11.3	PLD5	"hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10chr1:242363671-242383825"	NA	inner
LNCA_21_P0008443	6.708268	P	6.5114	P	1.14620730820249	0	lncRNA	TCONS_00022755	NA	NA	NA	NA	XLOC_011038	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011038), lincRNA [TCONS_00022755]"	chr14:56980730-56980671	hs|14q22.3	Agilent_HUMAN_G3V2	TCONS_00022755	TCONS_00022755	chr14	 56980671	 56980730	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45314_PI429285431	1.0887775	A	2.423807	A	0.396383963025696	0	lncRNA	49756-1_{1..1469}	"gi|383792203|ref|NR_047538.1| Homo sapiens CDKN2B antisense RNA 1 (CDKN2B-AS1), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|383792203|ref|NR_047538.1| Homo sapiens CDKN2B antisense RNA 1 (CDKN2B-AS1), transcript variant 8, non-coding RNA"	Chr9	 21994790	 21996258	+	100048912	NR_047538.1	NA	NA	NA	NA	NA	inter
CUST_45085_PI429285431	1.8413422	A	0.9894886	A	1.80481829854168	0	lncRNA	49569-1_{1..463}	"gi|300244511|ref|NR_033999.1| Homo sapiens uncharacterized LOC100129148 (LOC100129148), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300244511|ref|NR_033999.1| Homo sapiens uncharacterized LOC100129148 (LOC100129148), non-coding RNA"	Chr7	139102208	139102670	-	100129148	NR_033999.1	NA	NA	NA	"hg19_refFlat_C7orf55-LUC7L2:range=chr7:139026131-1391070865'pad=0,hg19_refFlat_C7orf55-LUC7L2:range=chr7:139026131-1391070865'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.90;hg19_refFlat_LUC7L2:range=chr7:139059160-1391070865'pad=0,hg19_refFlat_LUC7L2:range=chr7:139059160-1391070865'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.90;hg19_refFlat_LUC7L2:range=chr7:139056158-1391070865'pad=0,hg19_refFlat_LUC7L2:range=chr7:139056158-1391070865'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.90;hg19_refFlat_LUC7L2:range=chr7:139045008-1391070865'pad=0,hg19_refFlat_LUC7L2:range=chr7:139045008-1391070865'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.90"	NA	inter
CUST_20078_PI429285431	0.9157722	A	1.2585535	A	0.788519697713573	0	lncRNA	21726-1_{1..539}	lnc-TIGIT-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIGIT-2:1	chr3	114085814	114086352	+	lnc-TIGIT-2	lnc-TIGIT-2:1	ENSG00000241560.1	ZBTB20-AS1	ZBTB20	"hg19_refFlat_ZBTB20:range=chr3:114057852-1140707055'pad=0,hg19_refFlat_ZBTB20:range=chr3:114057852-1140707055'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZBTB20:range=chr3:114057852-1140996345'pad=0,hg19_refFlat_ZBTB20:range=chr3:114057852-1140996345'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60chr3:114075814-114095891"	NA	inner
CUST_37703_PI429285431	8.429538	P	8.572147	P	0.905879461699206	0	lncRNA	38797-1_{1..347}	n346198|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1748|NULL|-1.3774400|-0.2349800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346198|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1748|NULL|-1.3774400|-0.2349800	chr2	133013065	133013411	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35840_PI429285431	0.9265429	A	1.1870766	A	0.834779050275046	0	lncRNA	37239-2_{3001..4759}	n344510|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_58|NULL|-1.4594500|-0.3051135	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344510|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_58|NULL|-1.4594500|-0.3051135	chr3	 62939035	 62940793	+	NA	NA	NA	NA	NA	"hg19_refFlat_KRT8:range=chr12:53291212-532987655'pad=0,hg19_refFlat_KRT8:range=chr12:53291212-532987655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_KRT6C:range=chr12:52862846-528675215'pad=0,hg19_refFlat_KRT6C:range=chr12:52862846-528675215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_KRT5:range=chr12:52908726-529140805'pad=0,hg19_refFlat_KRT5:range=chr12:52908726-529140805'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_KRT6A:range=chr12:52881504-528869725'pad=0,hg19_refFlat_KRT6A:range=chr12:52881504-528869725'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_KRT3:range=chr12:53183826-531898265'pad=0,hg19_refFlat_KRT3:range=chr12:53183826-531898265'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00;hg19_refFlat_KRT8:range=chr12:53291212-533202335'pad=0,hg19_refFlat_KRT8:range=chr12:53291212-533202335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_KRT6B:range=chr12:52840974-528458625'pad=0,hg19_refFlat_KRT6B:range=chr12:52840974-528458625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60"	NA	inter
CUST_8142_PI429285431	4.019864	P	4.4666395	P	0.733680832406792	0	lncRNA	9745-1_{1..1485}	lnc-ENDOD1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ENDOD1-1:6	chr11	 94966618	 94968102	+	lnc-ENDOD1-1	lnc-ENDOD1-1:6	ENSG00000245552	RP11-712B9.2	SESN3	NA	chr11:94956618-94964246	inter
CUST_20483_PI429285431	2.9905825	A	2.839608	A	1.11031920828216	0	lncRNA	22126-1_{1..526}	lnc-FN1-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FN1-3:6	chr2	216485841	216486366	-	lnc-FN1-3	lnc-FN1-3:6	ENSG00000235770.1	LINC00607	NA	NA	NA	inter
CUST_27677_PI429285431	0.9089157	A	0.90463644	A	1.00297056040021	0	lncRNA	29255-1_{1..1850}	n324884|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170848|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170848|-0.7859240|-0.3752735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324884|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170848|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170848|-0.7859240|-0.3752735	chr21	 21036778	 21038627	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30060_PI429285431	4.8071136	P	4.9378242	P	0.913381453027635	0	lncRNA	31829-1_{1..340}	n334572|U66049|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220904|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220904|-1.0388900|-0.2322702	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334572|U66049|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220904|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220904|-1.0388900|-0.2322702	chrX	148622528	148622867	+	NA	NA	NA	NA	CXorf40A	NA	chrX:148622519-148632086	inner
CUST_6755_PI429285431	4.969204	P	5.35192	P	0.766992300324839	0	lncRNA	6703-1_{1..859}	"transcript_id ""ENST00000603265.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603265.1"" | genecode_v17"	chr21	 11169788	 11170646	+	ENSG00000271308.1	ENST00000603265.1	AP003900.6	AP003900.6-001	NA	NA	NA	inter
CUST_31579_PI429285431	3.7345304	P	3.6749191	P	1.04218493097201	0	lncRNA	33336-1_{1..2090}	n338083|AK124797|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|470|NULL|-0.7467140|-0.1866521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338083|AK124797|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|470|NULL|-0.7467140|-0.1866521	chr15	 83781491	 83783580	-	NA	NA	NA	NA	TM6SF1	"hg19_refFlat_TM6SF1:range=chr15:83776433-838054245'pad=0,hg19_refFlat_TM6SF1:range=chr15:83776433-838054245'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20chr15:83776324-83793580"	NA	inner
CUST_17061_PI429285431	4.8692045	P	5.0077367	P	0.90844293645345	0	lncRNA	18770-1_{1..1500}	lnc-KHDRBS3-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KHDRBS3-4:2	chr8	135854468	135855967	+	lnc-KHDRBS3-4	lnc-KHDRBS3-4:2	XLOC_006935	linc-KHDRBS3-3	NA	NA	NA	inter
CUST_21806_PI429285431	1.3972232	A	0.928464	A	1.38391870712171	0	lncRNA	23416-1_{1..500}	lnc-SRY-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRY-2:1	chrY	  2870354	  2870853	-	lnc-SRY-2	lnc-SRY-2:1	ENSG00000233070.1	ZFY-AS1	NA	NA	NA	inter
CUST_11079_PI429285431	6.625297	P	6.832271	P	0.86635246951346	0	lncRNA	12631-1_{1..220}	lnc-ATP5O-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP5O-1:1	chr21	 35340956	 35341175	-	lnc-ATP5O-1	lnc-ATP5O-1:1	XLOC_014063	linc-ATP5O-2	NA	NA	NA	inter
LNCA_21_P0009383	2.349355	A	3.1559238	P	0.571740026726768	0	lncRNA	TCONS_00025865	NA	NA	NA	NA	XLOC_012142	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012142), lincRNA [TCONS_00025865]"	chr17:20979246-21020917	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_00025865	TCONS_00025865	chr17	 20979246	 21020917	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002946	2.30587	A	1.0194811	A	2.439167613607	0	lncRNA	TCONS_00005992	NA	NA	NA	NA	XLOC_002617	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002617), lincRNA [TCONS_00005992]"	chr3:39252098-39252157	hs|3p22.2	Agilent_HUMAN_G3V2	TCONS_00005992	TCONS_00005992	chr3	 39252098	 39252157	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31171_PI429285431	1.2155862	A	0.9272008	A	1.22127271857525	0	lncRNA	32966-1_{1..200}	n337594|S86388|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000398645|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000398645|0.5571520|-0.1135544	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337594|S86388|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000398645|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000398645|0.5571520|-0.1135544	chr4	104577326	104577525	-	NA	NA	NA	NA	TACR3	NA	chr4:104567326-104587526	inner
CUST_5301_PI429285431	3.708678	P	3.4134445	P	1.22708356449401	0	lncRNA	5241-1_{1..1456}	"transcript_id ""ENST00000567484.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567484.1"" | genecode_v17"	chr15	 90052192	 90053647	+	ENSG00000261478.1	ENST00000567484.1	RP11-429B14.4	RP11-429B14.4-001	NA	NA	NA	inter
CUST_30131_PI429285431	1.0934926	A	1.7406582	A	0.638533581203342	0	lncRNA	31905-1_{1..495}	n334777|AJ227865|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245014|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245014|-1.1823500|-0.4095214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334777|AJ227865|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245014|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245014|-1.1823500|-0.4095214	chrX	108975213	108975707	-	NA	NA	NA	NA	ACSL4	NA	chrX:108965213-108976621	inner
CUST_26212_PI429285431	1.019475	A	1.7388344	A	0.607367071583047	0	lncRNA	27721-1_{1..806}	lnc-FOXB1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXB1-5:2	chr15	 61057380	 61058185	+	lnc-FOXB1-5	lnc-FOXB1-5:2	ENSG00000259591.1	RP11-554D20.1	RORA	NA	chr15:61047380-61067824	inner
CUST_33966_PI429285431	3.5287728	P	2.494313	A	2.04834652346	0	lncRNA	35504-1_{1..1480}	n340775|BC040901|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3238|NULL|-0.7943630|-0.2714802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n340775|BC040901|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3238|NULL|-0.7943630|-0.2714802	chr5	179286012	179287491	+	NA	NA	NA	NA	TBC1D9B	NA	chr5:179289071-179298283	inter
CUST_1926_PI429285431	0.897226	A	1.5617927	A	0.630878154334109	0	lncRNA	1917-1_{1..512}	"transcript_id ""ENST00000509497.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509497.1"" | genecode_v17"	chr4	143487172	143487683	+	ENSG00000249806.1	ENST00000509497.1	RP11-223C24.1	RP11-223C24.1-001	INPP4B	NA	chr4:143477172-143592103	inner
LNCA_21_P0006342	8.180748	P	8.550432	P	0.773952000403386	0	lncRNA	TCONS_00016543	NA	NA	NA	NA	XLOC_007302	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007302), lincRNA [TCONS_00016543]"	chr9:23946880-23946939	hs|9p21.3	Agilent_HUMAN_G3V2	TCONS_00016543	TCONS_00016543	chr9	 23946880	 23946939	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12734_PI429285431	6.825	P	7.250658	P	0.744499094893503	0	lncRNA	14359-1_{1..564}	lnc-GINS2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GINS2-2:2	chr16	 85615625	 85616188	-	lnc-GINS2-2	lnc-GINS2-2:2	XLOC_012037	linc-FAM92B-3	NA	NA	NA	inter
CUST_42286_PI429285431	11.861906	P	11.662024	P	1.14860440523015	0	lncRNA	44900-1_{1..151}	ENST00000517218 ncrna:snoRNA chromosome:GRCh37:19:45268207:45268357:1 gene:ENSG00000253027 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517218 ncrna:snoRNA chromosome:GRCh37:19:45268207:45268357:1 gene:ENSG00000253027 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	 45268207	 45268357	+	ENSG00000253027	ENST00000517218	NA	NA	BCL3	NA	chr19:45258207-45263301	inter
CUST_37663_PI429285431	6.4999933	P	6.6530375	P	0.899350758221714	0	lncRNA	38756-1_{1..1629}	n346146|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1696|NULL|-1.2612200|-0.2265578	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346146|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1696|NULL|-1.2612200|-0.2265578	chr10	 38645330	 38646958	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11277_PI429285431	1.7835007	A	2.0386724	A	0.837887408928745	0	lncRNA	12837-1_{1..252}	lnc-RALB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RALB-2:1	chr2	121085426	121085677	+	lnc-RALB-2	lnc-RALB-2:1	XLOC_001640	linc-INHBB	NA	NA	NA	inter
CUST_37484_PI429285431	7.281179	P	7.2624135	P	1.01309221571325	0	lncRNA	38584-1_{1..284}	n345944|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1493|NULL|-1.8584800|-0.0781782	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345944|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1493|NULL|-1.8584800|-0.0781782	chr15	102506269	102506552	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9791_PI429285431	0.9093263	A	0.91322947	A	0.997298185208427	0	lncRNA	11308-1_{1..1349}	lnc-FAM84B-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM84B-6:3	chr8	128197072	128198420	-	lnc-FAM84B-6	lnc-FAM84B-6:3	XLOC_007214	linc-FAM84B-8	NA	NA	NA	inter
CUST_2128_PI429285431	0.916815	A	0.916289	A	1.00036466188996	0	lncRNA	2119-1_{1..335}	"transcript_id ""ENST00000514225.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514225.1"" | genecode_v17"	chr5	 32646670	 32647004	-	ENSG00000250885.1	ENST00000514225.1	CTD-2004A9.1	CTD-2004A9.1-001	NA	NA	NA	inter
CUST_19039_PI429285431	1.3726417	A	1.5006421	A	0.9150989144086	0	lncRNA	20729-1_{1..1504}	lnc-VAMP1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-VAMP1-1:9	chr12	  6556127	  6557630	-	lnc-VAMP1-1	lnc-VAMP1-1:9	ENSG00000215039	AC005840.1	TAPBPL	NA	chr12:6561177-6566939	inter
CUST_37285_PI429285431	0.9129052	A	0.8993175	A	1.00946276747432	0	lncRNA	38394-1_{1..1830}	n345727|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1276|NULL|-1.5316900|-0.2501585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345727|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1276|NULL|-1.5316900|-0.2501585	chr6	 14293541	 14295370	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41626_PI429285431	4.677474	P	4.772406	P	0.936316378738388	0	lncRNA	43010-1_{1..98}	ENST00000362227 ncrna:miRNA chromosome:GRCh37:X:133680644:133680741:-1 gene:ENSG00000199097 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362227 ncrna:miRNA chromosome:GRCh37:X:133680644:133680741:-1 gene:ENSG00000199097 gene_biotype:miRNA transcript_biotype:miRNA	chrX	133680644	133680741	-	ENSG00000199097	ENST00000362227	NA	NA	NA	NA	NA	inter
CUST_36482_PI429285431	1.0576537	A	0.9049401	A	1.11165845211809	0	lncRNA	37686-1_{1..3000}	n344986|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_535|NULL|-1.3681000|-0.2402240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344986|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_535|NULL|-1.3681000|-0.2402240	chr8	   563150	   566149	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20"	NA	inter
CUST_23559_PI429285431	0.9005311	A	0.89318323	A	1.00510614753712	0	lncRNA	25126-1_{1..637}	lnc-PALLD-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PALLD-2:1	chr4	170141436	170142072	+	lnc-PALLD-2	lnc-PALLD-2:1	ENSG00000251171.1	RP11-327O17.2	SH3RF1	NA	chr4:170131436-170151500	inner
CUST_5970_PI429285431	5.948287	P	6.0514317	P	0.931001437195462	0	lncRNA	5899-1_{1..529}	"transcript_id ""ENST00000581412.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581412.1"" | genecode_v17"	chr17	 72595979	 72596507	+	ENSG00000261222.2	ENST00000581412.1	CTD-2006K23.1	CTD-2006K23.1-002	CD300E	NA	chr17:72606022-72610408	inter
CUST_37957_PI429285431	0.90791184	A	0.90848196	A	0.999604901001593	0	lncRNA	39047-1_{1..3000}	n346506|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2056|NULL|-1.3176700|-0.3550158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346506|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2056|NULL|-1.3176700|-0.3550158	chr2	 56183726	 56186725	-	NA	NA	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50"	NA	inter
CUST_7316_PI429285431	0.92952347	A	0.92588025	A	1.00252847889576	0	lncRNA	8535-1_{1..292}	"transcript_id ""ENST00000580349.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580349.1"" | genecode_v17"	chr15	 93399733	 93400024	+	ENSG00000264123.1	ENST00000580349.1	RN7SL599P	RN7SL599P-201	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10"	NA	inter
CUST_50470_PI429285431	0.919276	A	0.9084753	A	1.00751456846906	0	lncRNA	54171-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030539 range=chrX:74959074-74966889 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030539 range=chrX:74959074-74966889 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 74959074	 74962073	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10"	NA	inter
CUST_37837_PI429285431	3.6124508	P	4.1540556	P	0.687006283785569	0	lncRNA	38928-1_{1..2633}	n346360|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1910|NULL|-1.3006500|-0.2966092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n346360|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1910|NULL|-1.3006500|-0.2966092	chr10	103461536	103464168	-	NA	NA	NA	NA	FBXW4	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50chr10:103451536-103454743"	NA	inter
CUST_34845_PI429285431	3.7258127	P	3.7822042	P	0.96166645459563	0	lncRNA	36272-1_{1..1032}	n341748|BC039487|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4221|NULL|-1.3191600|-0.3078596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341748|BC039487|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4221|NULL|-1.3191600|-0.3078596	chr9	108870331	108871362	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31247_PI429285431	2.9893124	A	2.8501613	A	1.1012569316952	0	lncRNA	33038-1_{1..1976}	n337700|BC041482|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|82|NULL|-1.2219200|-0.3116254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337700|BC041482|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|82|NULL|-1.2219200|-0.3116254	chr15	 39480638	 39482613	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25572_PI429285431	5.8488007	P	6.001056	P	0.899842679115291	0	lncRNA	27101-1_{1..563}	lnc-AC002472.13.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC002472.13.1-1:1	chr22	 21398196	 21398758	+	lnc-AC002472.13.1-1	lnc-AC002472.13.1-1:1	ENSG00000226872.1	AC002472.11	NA	"hg19_refFlat_SLC7A4:range=chr22:21383344-213861015'pad=0,hg19_refFlat_SLC7A4:range=chr22:21383344-213861015'pad=0 3'pad=0 strand=- repeatMasking=none,-101.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40"	NA	inter
CUST_36387_PI429285431	1.38395	A	1.5273099	A	0.905408088417905	0	lncRNA	37605-1_{1..814}	n344904|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_453|NULL|-1.3657100|-0.2658062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344904|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_453|NULL|-1.3657100|-0.2658062	chr6	 56723279	 56724092	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14539_PI429285431	4.683283	P	5.436695	P	0.593198970869086	0	lncRNA	16207-1_{1..276}	lnc-EFR3B-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFR3B-3:7	chr2	 25201929	 25202204	+	lnc-EFR3B-3	lnc-EFR3B-3:7	XLOC_001398	linc-EFR3B	DNAJC27	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60chr2:25191929-25194963"	NA	inter
CUST_10250_PI429285431	2.4370131	A	3.67534	P	0.423863928186178	0	lncRNA	11777-1_{1..572}	lnc-BCL11B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BCL11B-1:2	chr14	 99753611	 99754182	-	lnc-BCL11B-1	lnc-BCL11B-1:2	XLOC_011119	linc-BCL11B	NA	NA	NA	inter
CUST_27547_PI429285431	0.94751996	A	0.9177949	A	1.02081756599851	0	lncRNA	29122-1_{1..431}	n324733|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319065|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319065|-1.3111900|-0.5259893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324733|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319065|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319065|-1.3111900|-0.5259893	chr22	 18725295	 18725725	+	NA	NA	NA	NA	LOC642643	NA	chr22:18715295-18737841	inter
CUST_22591_PI429285431	1.1210909	A	0.92104733	A	1.14873304669671	0	lncRNA	24175-1_{1..443}	lnc-FAM189A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM189A2-1:1	chr9	 72109203	 72109645	+	lnc-FAM189A2-1	lnc-FAM189A2-1:1	ENSG00000229312.1	RP11-470P21.2	APBA1	NA	chr9:72099203-72119429	inner
CUST_30270_PI429285431	6.870264	P	6.688228	P	1.1344837936955	0	lncRNA	32045-1_{1..332}	n335156|AY312581|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251644|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251644|1.1991000|-0.1177474	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335156|AY312581|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251644|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251644|1.1991000|-0.1177474	chr7	 30962193	 30962524	+	NA	NA	NA	NA	AQP1	NA	chr7:30952193-30965131	inner
CUST_25396_PI429285431	0.8996333	A	0.898873	A	1.00052713869017	0	lncRNA	26927-1_{1..742}	lnc-KRR1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KRR1-3:1	chr12	 76092487	 76093228	-	lnc-KRR1-3	lnc-KRR1-3:1	ENSG00000258088.1	RP11-114H23.2	NA	NA	NA	inter
LNCA_21_P0008825	0.9256769	A	0.9230027	A	1.001855333195	0	lncRNA	TCONS_00023942	NA	NA	NA	NA	XLOC_011256	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011256), lincRNA [TCONS_00023942]"	chr15:52981159-52981218	hs|15q21.3	Agilent_HUMAN_G3V2	TCONS_00023942	TCONS_00023942	chr15	 52981159	 52981218	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33065_PI429285431	4.080057	P	4.164613	P	0.943074729439212	0	lncRNA	34674-1_{1..1987}	n339753|BC015673|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2200|NULL|-0.9041720|-0.1858085	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339753|BC015673|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2200|NULL|-0.9041720|-0.1858085	chr20	 61758846	 61760832	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14451_PI429285431	1.5001011	A	1.8681766	A	0.77481538178531	0	lncRNA	16114-1_{1..1519}	lnc-ZNF367-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF367-1:1	chr9	 99258489	 99260007	-	lnc-ZNF367-1	lnc-ZNF367-1:1	XLOC_007789	linc-ZNF367-2	CDC14B	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80chr9:99262395-99268611"	NA	inter
CUST_44887_PI429285431	3.0053263	A	3.7175434	P	0.610381397855328	0	lncRNA	49410-1_{1..3000}	"gi|386781724|ref|NR_048542.1| Homo sapiens serine/threonine kinase 31 (STK31), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386781724|ref|NR_048542.1| Homo sapiens serine/threonine kinase 31 (STK31), transcript variant 3, non-coding RNA"	Chr7	 23749786	 23752785	+	56164	NR_048542.1	NA	NA	NA	NA	NA	inter
CUST_51975_PI429285431	0.9800638	A	0.9716114	A	1.00587595331326	0	lncRNA	55515-3_{6001..8729}	hg19_lincRNAsTranscripts_TCONS_l2_00016358 range=chr20:58609422-58621469 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016358 range=chr20:58609422-58621469 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 58615422	 58618150	+	NA	NA	NA	NA	C20orf197	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0,hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70chr20:58630980-58631469"	NA	inter
CUST_46106_PI429285431	0.90181655	A	0.9015776	A	1.00016564123579	0	lncRNA	50368-2_{3001..5023}	"gi|333805624|ref|NR_038265.1| Homo sapiens protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 (PPFIA2), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333805624|ref|NR_038265.1| Homo sapiens protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 (PPFIA2), transcript variant 8, non-coding RNA"	Chr12	 81655045	 81657067	-	8499	NR_038265.1	NA	NA	NA	NA	NA	inter
CUST_27152_PI429285431	3.9583511	P	4.126561	P	0.889946244136015	0	lncRNA	28688-1_{1..1005}	n324276|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322482|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322482|-0.3953580|-0.2595812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324276|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322482|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322482|-0.3953580|-0.2595812	chr7	   112689	   113693	-	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30"	NA	inter
LNCA_21_P0003649	0.92895424	A	1.8279061	A	0.536276202631206	0	lncRNA	TCONS_00008218	NA	NA	NA	NA	XLOC_003680	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003680), lincRNA [TCONS_00008218]"	chr4:124448772-124448831	hs|4q28.1	Agilent_HUMAN_G3V2	TCONS_00008218	TCONS_00008218	chr4	124448772	124448831	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14699_PI429285431	0.91339713	A	0.9053975	A	1.00556032250795	0	lncRNA	16363-1_{1..1357}	lnc-C8orf12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C8orf12-1:1	chr8	 11225788	 11227144	+	lnc-C8orf12-1	lnc-C8orf12-1:1	XLOC_006710	linc-BLK	NA	NA	NA	inter
CUST_38109_PI429285431	3.3308938	P	1.2058518	A	4.36215792074603	0	lncRNA	39183-1_{1..2481}	n381184|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ebn.1||0.2273310|-0.3693695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381184|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ebn.1||0.2273310|-0.3693695	chr1	112256829	112259309	+	NA	NA	NA	NA	RAP1A	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00chr1:112246829-112256101"	NA	inter
CUST_49254_PI429285431	6.5182385	P	6.563694	P	0.968983832782112	0	lncRNA	53073-1_{1..1043}	hg19_lincRNAsTranscripts_TCONS_l2_00022944 range=chr5:70500142-70585602 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022944 range=chr5:70500142-70585602 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 70500142	 70501184	-	NA	NA	NA	NA	LOC100652870	NA	chr5:70519357-70519728	inter
CUST_7920_PI429285431	0.91471887	A	0.9123507	A	1.00164283834135	0	lncRNA	9533-1_{1..3000}	lnc-LECT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LECT1-1:1	chr13	 53268955	 53271954	-	lnc-LECT1-1	lnc-LECT1-1:1	ENSG00000248190	XLOC_010622	SUGT1	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70chr13:53258955-53262433"	NA	inter
CUST_22694_PI429285431	0.89641553	A	1.3453124	A	0.732602805009699	0	lncRNA	24277-1_{1..527}	lnc-PANK3-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PANK3-7:1	chr5	166736804	166737330	-	lnc-PANK3-7	lnc-PANK3-7:1	ENSG00000253527.1	CTB-105L4.2	ODZ2	NA	chr5:166726804-166746875	inner
CUST_40772_PI429285431	7.459821	P	8.532373	P	0.475477177590375	0	lncRNA	41492-1_{1..3000}	n410492|NR_037634|lncRNA|Homosapiens||RefGeneNoncode|NR_037634||5.3790800|-0.3527510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410492|NR_037634|lncRNA|Homosapiens||RefGeneNoncode|NR_037634||5.3790800|-0.3527510	chr1	 39328161	 39331160	-	NA	NA	NA	NA	RRAGC	NA	chr1:39318161-39325340	inter
CUST_41328_PI429285431	2.9564	A	3.2681441	P	0.805667184690814	0	lncRNA	42382-1_{1..97}	ENST00000411359 ncrna:miRNA chromosome:GRCh37:6:12753907:12754003:1 gene:ENSG00000223291 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000411359 ncrna:miRNA chromosome:GRCh37:6:12753907:12754003:1 gene:ENSG00000223291 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 12753907	 12754003	+	ENSG00000223291	ENST00000411359	NA	NA	PHACTR1	NA	chr6:12743907-12764003	inner
LNCA_21_P0006837	0.9577232	A	0.9657044	A	0.99448312786449	0	lncRNA	TCONS_00018127	NA	NA	NA	NA	XLOC_008402	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008402), lincRNA [TCONS_00018127]"	chr10:16581710-16581769	hs|10p13	Agilent_HUMAN_G3V2	TCONS_00018127	TCONS_00018127	chr10	 16581710	 16581769	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16120_PI429285431	0.9150006	A	0.90861183	A	1.0044381775793	0	lncRNA	17826-1_{1..1005}	lnc-PTGFR-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTGFR-1:4	chr1	 78715868	 78716872	+	lnc-PTGFR-1	lnc-PTGFR-1:4	XLOC_000264	linc-PTGFR	NA	NA	NA	inter
CUST_10511_PI429285431	1.0741894	A	0.9146098	A	1.11696160906573	0	lncRNA	12037-1_{1..2177}	lnc-NMUR2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NMUR2-1:4	chr5	152351826	152354002	-	lnc-NMUR2-1	lnc-NMUR2-1:4	XLOC_005056	linc-NMUR2-1	NA	NA	NA	inter
CUST_10556_PI429285431	11.479863	P	11.723017	P	0.844896191437193	0	lncRNA	12087-1_{1..472}	lnc-TRAPPC12-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRAPPC12-3:2	chr2	  2876131	  2876602	+	lnc-TRAPPC12-3	lnc-TRAPPC12-3:2	XLOC_001320	linc-TTC15-2	NA	NA	NA	inter
CUST_16675_PI429285431	0.9237956	A	0.9293695	A	0.99614392077169	0	lncRNA	18380-1_{1..921}	lnc-AGTPBP1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AGTPBP1-3:2	chr9	 87655748	 87656668	-	lnc-AGTPBP1-3	lnc-AGTPBP1-3:2	XLOC_007754	linc-SLC28A3	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30"	NA	inter
CUST_29531_PI429285431	3.2035682	P	3.7329261	P	0.692863037858917	0	lncRNA	31290-1_{1..545}	n332995|AF141655|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071186|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071186|1.1894800|-0.1116496	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332995|AF141655|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071186|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071186|1.1894800|-0.1116496	chr12	133758145	133758689	+	NA	NA	NA	NA	ZNF268	NA	chr12:133757995-133778209	inner
CUST_47547_PI429285431	2.3615901	A	3.42464	P	0.478619174310143	0	lncRNA	51556-1_{1..1532}	"gi|224548995|ref|NR_027231.1| Homo sapiens long intergenic non-protein coding RNA 685 (LINC00685), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|224548995|ref|NR_027231.1| Homo sapiens long intergenic non-protein coding RNA 685 (LINC00685), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_027231.1	NA	NA	NA	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-55.20;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	Unknown
CUST_42048_PI429285431	0.96707666	A	1.3129023	A	0.786857536960595	0	lncRNA	43947-1_{1..86}	ENST00000408291 ncrna:miRNA chromosome:GRCh37:15:56053215:56053300:-1 gene:ENSG00000221218 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408291 ncrna:miRNA chromosome:GRCh37:15:56053215:56053300:-1 gene:ENSG00000221218 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 56053215	 56053300	-	ENSG00000221218	ENST00000408291	NA	NA	NA	NA	NA	inter
CUST_36435_PI429285431	1.0236615	A	0.92968816	A	1.06730561479299	0	lncRNA	37649-1_{1..541}	n344949|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_498|NULL|-1.4291700|-0.3830364	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344949|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_498|NULL|-1.4291700|-0.3830364	chr7	 26694837	 26695377	-	NA	NA	NA	NA	C7orf71	NA	chr7:26684837-26686924	inter
CUST_156_PI429285431	6.059219	P	6.1509094	P	0.938422558842662	0	lncRNA	147-1_{1..497}	"transcript_id ""ENST00000452982.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452982.1"" | genecode_v17"	chr1	  8268732	  8269228	+	ENSG00000227634.1	ENST00000452982.1	RP11-431K24.3	RP11-431K24.3-001	NA	NA	NA	inter
CUST_33269_PI429285431	2.775538	A	2.2049475	A	1.48513131555646	0	lncRNA	34854-1_{1..1249}	n339976|BC067233|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2429|NULL|-0.3779870|-0.4344857	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339976|BC067233|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2429|NULL|-0.3779870|-0.4344857	chr10	 14946613	 14947861	-	NA	NA	NA	NA	SUV39H2	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60chr10:14936613-14946314"	NA	inter
CUST_33331_PI429285431	2.5465298	A	2.579784	A	0.977213568151479	0	lncRNA	34913-1_{1..3000}	n340047|BC041845|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2502|NULL|-1.1662900|-0.3502670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340047|BC041845|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2502|NULL|-1.1662900|-0.3502670	chr10	 68653867	 68656866	-	NA	NA	NA	NA	CTNNA3	NA	chr10:68643867-68781911	inner
CUST_34324_PI429285431	0.92249864	A	0.92400616	A	0.99895561251499	0	lncRNA	35818-1_{1..1763}	n341188|AK092521|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3654|NULL|-1.3020000|-0.3432531	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341188|AK092521|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3654|NULL|-1.3020000|-0.3432531	chr7	 12626245	 12628007	-	NA	NA	NA	NA	SCIN	NA	chr7:12616245-12638008	inner
CUST_9359_PI429285431	0.9711876	A	0.9437965	A	1.01916744513332	0	lncRNA	10863-1_{1..208}	lnc-CABP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CABP2-1:1	chr11	 67330836	 67331043	-	lnc-CABP2-1	lnc-CABP2-1:1	XLOC_009480	linc-CABP2	NA	NA	NA	inter
CUST_46216_PI429285431	2.2824495	A	1.8589175	A	1.3412070762797	0	lncRNA	50457-2_{3001..3239}	"gi|301500694|ref|NR_036439.1| Homo sapiens cytidine and dCMP deaminase domain containing 1 (CDADC1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301500694|ref|NR_036439.1| Homo sapiens cytidine and dCMP deaminase domain containing 1 (CDADC1), transcript variant 3, non-coding RNA"	Chr13	 49825047	 49825285	+	81602	NR_036439.1	NA	NA	NA	NA	NA	inter
CUST_6659_PI429285431	0.9310196	A	1.0498732	A	0.920919144342837	0	lncRNA	6605-1_{1..359}	"transcript_id ""ENST00000420705.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420705.1"" | genecode_v17"	chr20	 21074199	 21074557	-	ENSG00000225127.2	ENST00000420705.1	LINC00237	LINC00237-002	PLK1S1	NA	chr20:21095322-21096975	inter
CUST_46116_PI429285431	1.5990348	A	0.9125597	A	1.60934663536907	0	lncRNA	50376-2_{3001..4653}	"gi|333609226|ref|NR_038241.1| Homo sapiens vezatin, adherens junctions transmembrane protein (VEZT), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333609226|ref|NR_038241.1| Homo sapiens vezatin, adherens junctions transmembrane protein (VEZT), transcript variant 2, non-coding RNA"	Chr12	 95614522	 95616174	+	55591	NR_038241.1	NA	NA	NA	NA	NA	inter
CUST_27427_PI429285431	0.9309076	A	1.0400499	A	0.927139093705641	0	lncRNA	28992-1_{1..489}	n324597|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039803|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039803|-1.2490400|-0.4066059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324597|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039803|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039803|-1.2490400|-0.4066059	chr6	  8729409	  8729897	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25407_PI429285431	0.92922044	A	1.2073357	A	0.824667661510594	0	lncRNA	26938-1_{1..451}	lnc-ODF4-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ODF4-2:4	chr17	  8284363	  8284813	+	lnc-ODF4-2	lnc-ODF4-2:4	ENSG00000265749.1	RP11-849F2.5	KRBA2	NA	chr17:8274363-8274858	inner
CUST_8558_PI429285431	4.627529	P	5.049444	P	0.746433168336885	0	lncRNA	10117-1_{1..1552}	lnc-NT5C2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NT5C2-1:1	chr10	105035973	105037524	-	lnc-NT5C2-1	lnc-NT5C2-1:1	ENSG00000244967	AL360001.1	INA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr10:105036920-105046751"	NA	inter
LNCA_21_P0014682	1.03277	A	1.0322562	A	1.0003562024464	0	lncRNA	XR_111536	XR_111536	XR_111536	NA	NA	LOC100506942	uncharacterized LOC100506942	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506942 (LOC100506942), miscRNA [XR_111536]"	chr15:81654271-81654330	hs|15q25.1	Agilent_HUMAN_G3V2	XR_111536	XR_111536	chr15	 81654271	 81654330	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19869_PI429285431	0.91729116	A	1.1358659	A	0.85941404517606	0	lncRNA	21525-1_{1..440}	lnc-ZNF236-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF236-1:2	chr18	 74690623	 74691062	+	lnc-ZNF236-1	lnc-ZNF236-1:2	ENSG00000266844.1	RP11-862L9.3	MBP	NA	chr18:74690789-74700817	inner
CUST_43597_PI429285431	0.9159605	A	0.9182842	A	0.998390630323051	0	lncRNA	48360-1_{1..1855}	"gi|310118725|ref|XR_108343.1| PREDICTED: Homo sapiens uncharacterized LOC642691 (FLJ37786), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118725|ref|XR_108343.1| PREDICTED: Homo sapiens uncharacterized LOC642691 (FLJ37786), misc_RNA"	Chr1	148864462	148866316	+	642691	XR_108343.2	NA	NA	NA	NA	NA	inter
CUST_30019_PI429285431	5.0825233	P	5.2829223	P	0.870309832138927	0	lncRNA	31787-1_{1..317}	n334457|U13223|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218137|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218137|2.6704200|-0.0164889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334457|U13223|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218137|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218137|2.6704200|-0.0164889	chr9	   117508	   117824	-	NA	NA	NA	NA	CBWD1	NA	chr9:121038-127825	inner
CUST_6323_PI429285431	3.0997338	P	3.0660515	A	1.02362146099829	0	lncRNA	6246-1_{1..644}	"transcript_id ""ENST00000398173.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000398173.3"" | genecode_v17"	chr19	  6396356	  6396999	+	ENSG00000214347.5	ENST00000398173.3	CTB-180A7.8	CTB-180A7.8-201	KHSRP	NA	chr19:6413115-6422415	inter
CUST_42019_PI429285431	4.0123367	P	3.5189376	P	1.40775775658763	0	lncRNA	43885-1_{1..65}	ENST00000585074 ncrna:miRNA chromosome:GRCh37:19:12897942:12898006:1 gene:ENSG00000263800 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585074 ncrna:miRNA chromosome:GRCh37:19:12897942:12898006:1 gene:ENSG00000263800 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 12897942	 12898006	+	ENSG00000263800	ENST00000585074	NA	NA	PRDX2	NA	chr19:12907634-12908006	inter
CUST_8258_PI429285431	3.0326474	A	3.8062334	P	0.584961670259591	0	lncRNA	9847-1_{1..2224}	lnc-C11orf1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf1-1:1	chr11	111782526	111784749	+	lnc-C11orf1-1	lnc-C11orf1-1:1	ENSG00000244975	ENST00000501136	CRYAB	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-30.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70chr11:111772526-111782473"	NA	inter
CUST_33901_PI429285431	1.2936612	A	0.9298517	A	1.28681931862016	0	lncRNA	35443-1_{1..1768}	n340693|BC035378|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3156|NULL|-1.1473300|-0.3489908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340693|BC035378|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3156|NULL|-1.1473300|-0.3489908	chr5	153281025	153282792	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41804_PI429285431	0.9186712	A	0.9168066	A	1.00129327779627	0	lncRNA	43391-1_{1..83}	ENST00000578823 ncrna:miRNA chromosome:GRCh37:19:20001968:20002050:1 gene:ENSG00000265339 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578823 ncrna:miRNA chromosome:GRCh37:19:20001968:20002050:1 gene:ENSG00000265339 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 20001968	 20002050	+	ENSG00000265339	ENST00000578823	NA	NA	ZNF93	NA	chr19:20011722-20012050	inner
CUST_18543_PI429285431	2.4148278	A	1.0396211	A	2.59405074146541	0	lncRNA	20255-1_{1..692}	lnc-SPRYD7-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPRYD7-1:8	chr13	 50655959	 50656650	-	lnc-SPRYD7-1	lnc-SPRYD7-1:8	ENSG00000231607	DLEU2	NA	NA	NA	inter
CUST_41541_PI429285431	6.3200307	P	6.487722	P	0.89026620717087	0	lncRNA	42818-1_{1..83}	ENST00000408483 ncrna:miRNA chromosome:GRCh37:19:10662798:10662880:1 gene:ENSG00000221410 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408483 ncrna:miRNA chromosome:GRCh37:19:10662798:10662880:1 gene:ENSG00000221410 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 10662798	 10662880	+	ENSG00000221410	ENST00000408483	NA	NA	KRI1	NA	chr19:10663761-10672880	inter
CUST_11033_PI429285431	1.2681028	A	0.9201273	A	1.27277332072106	0	lncRNA	12579-1_{1..308}	lnc-ADARB2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADARB2-4:1	chr10	  2231656	  2231963	-	lnc-ADARB2-4	lnc-ADARB2-4:1	XLOC_008686	linc-ADARB2-3	NA	NA	NA	inter
CUST_28471_PI429285431	1.053665	A	0.92369527	A	1.09427074150701	0	lncRNA	30138-1_{1..376}	n325806|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044033|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044033|-1.1909800|-0.3601899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325806|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044033|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044033|-1.1909800|-0.3601899	chr13	 19146763	 19147138	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1214_PI429285431	1.1726959	A	0.92890775	A	1.18409772235227	0	lncRNA	1205-1_{1..541}	"transcript_id ""ENST00000419860.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419860.1"" | genecode_v17"	chr2	205092860	205093400	-	ENSG00000237271.1	ENST00000419860.1	AC009498.1	AC009498.1-001	NA	NA	NA	inter
CUST_33131_PI429285431	1.4959491	A	0.9042182	A	1.5070537787682	0	lncRNA	34727-1_{1..1054}	n339820|BC042382|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2267|NULL|-1.1070100|-0.4232252	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339820|BC042382|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2267|NULL|-1.1070100|-0.4232252	chr18	 28711418	 28712471	+	NA	NA	NA	NA	DSC1	"hg19_refFlat_DSC1:range=chr18:28710477-287425575'pad=0,hg19_refFlat_DSC1:range=chr18:28710477-287425575'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_DSC1:range=chr18:28710766-287425575'pad=0,hg19_refFlat_DSC1:range=chr18:28710766-287425575'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00chr18:28709199-28722454"	NA	inner
CUST_8294_PI429285431	4.7508698	P	4.4197717	P	1.25797050807739	0	lncRNA	9879-1_{1..2093}	lnc-SLC25A30-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A30-1:1	chr13	 45960891	 45962983	-	lnc-SLC25A30-1	lnc-SLC25A30-1:1	ENSG00000250633	XLOC_010593	SLC25A30	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr13:45967451-45971128"	NA	inter
LNCA_21_P0005056	2.444787	A	3.1626768	P	0.607986080724815	0	lncRNA	TCONS_00012265	NA	NA	NA	NA	XLOC_005821	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005821), lincRNA [TCONS_00012265]"	chr6:122448430-122448371	hs|6q22.31	Agilent_HUMAN_G3V2	TCONS_00012265	TCONS_00012265	chr6	122448371	122448430	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37059_PI429285431	1.1465278	A	2.149407	A	0.499003140370776	0	lncRNA	38191-1_{1..646}	n345508|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1057|NULL|-1.5453900|-0.2468694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345508|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1057|NULL|-1.5453900|-0.2468694	chr2	  1623488	  1624133	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29466_PI429285431	2.6508865	A	1.7085799	A	1.92159806047139	0	lncRNA	31224-1_{1..306}	n332881|AF086020|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066899|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066899|-1.4289400|-0.4366867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332881|AF086020|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066899|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066899|-1.4289400|-0.4366867	chr8	 95384179	 95384484	-	NA	NA	NA	NA	RAD54B	NA	chr8:95384188-95394485	inner
CUST_15449_PI429285431	0.9286184	A	0.927045	A	1.0010911926919	0	lncRNA	17137-1_{1..682}	lnc-KLHDC4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHDC4-1:2	chr16	 87812593	 87813274	-	lnc-KLHDC4-1	lnc-KLHDC4-1:2	XLOC_012055	linc-KLHDC4	NA	NA	NA	inter
CUST_50515_PI429285431	8.569968	P	8.209515	P	1.2838289510163	0	lncRNA	54211-1_{1..2221}	hg19_lincRNAsTranscripts_TCONS_l2_00030365 range=chrX:134555992-134561940 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030365 range=chrX:134555992-134561940 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	134555992	134558212	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6886_PI429285431	6.9797816	P	7.4818726	P	0.70608266363984	0	lncRNA	6837-1_{1..3000}	"transcript_id ""ENST00000448049.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448049.1"" | genecode_v17"	chr21	 44866481	 44869480	+	ENSG00000188660.3	ENST00000448049.1	LINC00319	LINC00319-001	NA	NA	NA	inter
CUST_43959_PI429285431	6.760177	P	7.0834413	P	0.799259393577711	0	lncRNA	48665-1_{1..3000}	"gi|300192971|ref|NR_033232.2| Homo sapiens sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) (SMPD4), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|300192971|ref|NR_033232.2| Homo sapiens sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) (SMPD4), transcript variant 6, non-coding RNA"	Chr2	130908965	130911964	-	55627	NR_033232.2	NA	NA	NA	NA	NA	inter
CUST_7529_PI429285431	0.9212555	A	0.9284751	A	0.995008254990823	0	lncRNA	9167-1_{1..1365}	lnc-TAF12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TAF12-1:1	chr1	 28908602	 28909966	-	lnc-TAF12-1	lnc-TAF12-1:1	ENSG00000197989	SNHG12	TRNAU1AP	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90chr1:28898602-28905057"	NA	inter
CUST_24012_PI429285431	5.7468786	P	6.1430187	P	0.75988863189339	0	lncRNA	25565-1_{1..529}	lnc-TRIM41-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM41-2:7	chr5	180691053	180691581	+	lnc-TRIM41-2	lnc-TRIM41-2:7	ENSG00000248275.1	CTC-338M12.3	TRIM52	NA	chr5:180683373-180688119	inter
LNCA_21_P0010617	4.780788	P	5.2094207	P	0.742965590062165	0	lncRNA	TCONS_l2_00001241	NA	NA	NA	NA	XLOC_l2_000917	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000917), lincRNA [TCONS_l2_00001241]"	chr1:54441151-54441092	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_l2_00001241	TCONS_l2_00001241	chr1	 54441092	 54441151	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24761_PI429285431	2.939379	A	3.0361142	A	0.935146823873367	0	lncRNA	26305-1_{1..573}	lnc-RPL19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPL19-1:1	chr17	 37333457	 37334029	+	lnc-RPL19-1	lnc-RPL19-1:1	ENSG00000266101.1	RP5-906A24.2	CACNB1	"hg19_refFlat_CACNB1:range=chr17:37331446-373537485'pad=0,hg19_refFlat_CACNB1:range=chr17:37331446-373537485'pad=0 3'pad=0 strand=- repeatMasking=none,-101.60;hg19_refFlat_CACNB1:range=chr17:37333498-373537485'pad=0,hg19_refFlat_CACNB1:range=chr17:37333498-373537485'pad=0 3'pad=0 strand=- repeatMasking=none,-101.60chr17:37329709-37343756"	NA	inner
CUST_2354_PI429285431	2.2758863	A	1.7365477	A	1.4533060999593	0	lncRNA	2346-1_{1..580}	"transcript_id ""ENST00000511994.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511994.1"" | genecode_v17"	chr5	124704456	124705035	-	ENSG00000248147.1	ENST00000511994.1	RP11-395P13.1	RP11-395P13.1-001	NA	NA	NA	inter
CUST_31204_PI429285431	5.9378595	P	6.1461854	P	0.865541020603052	0	lncRNA	32998-1_{1..2966}	n337650|BC037321|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|29|NULL|-0.6937400|-0.2545276	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337650|BC037321|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|29|NULL|-0.6937400|-0.2545276	chr1	  4849636	  4852601	+	NA	NA	NA	NA	AJAP1	NA	chr1:4839636-4843851	inter
CUST_8050_PI429285431	4.3009944	P	4.29306	P	1.00551485814082	0	lncRNA	9658-1_{1..2484}	lnc-IDS-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-IDS-4:1	chrX	147003451	147005934	-	lnc-IDS-4	lnc-IDS-4:1	ENSG00000224191	FMR1-AS1	FMR1	"hg19_refFlat_FMR1:range=chrX:146993698-1470303505'pad=0,hg19_refFlat_FMR1:range=chrX:146993698-1470303505'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60;hg19_refFlat_FMR1:range=chrX:146993698-1470303645'pad=0,hg19_refFlat_FMR1:range=chrX:146993698-1470303645'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60chrX:146993469-147013676"	NA	inter
CUST_51464_PI429285431	3.7648933	P	4.349658	P	0.666758076274336	0	lncRNA	55041-1_{1..901}	hg19_lincRNAsTranscripts_TCONS_l2_00010125 range=chr16:33365341-33374151 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010125 range=chr16:33365341-33374151 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 33365341	 33366241	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49439_PI429285431	0.93053937	A	1.3863785	A	0.729085982765355	0	lncRNA	53241-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00023282 range=chr5:178193480-178246537 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023282 range=chr5:178193480-178246537 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	178193480	178196479	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3061_PI429285431	0.9208023	A	0.91812944	A	1.00185440265494	0	lncRNA	3040-1_{1..411}	"transcript_id ""ENST00000518163.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518163.1"" | genecode_v17"	chr8	 33831219	 33831629	-	ENSG00000254194.1	ENST00000518163.1	RP1-273G13.3	RP1-273G13.3-001	NA	NA	NA	inter
CUST_6721_PI429285431	1.1623131	A	0.90863967	A	1.19223896529001	0	lncRNA	6669-1_{1..321}	"transcript_id ""ENST00000425279.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425279.1"" | genecode_v17"	chr20	 51297967	 51298287	+	ENSG00000232294.1	ENST00000425279.1	RP4-715N11.2	RP4-715N11.2-004	NA	NA	NA	inter
CUST_24813_PI429285431	0.91644645	A	0.91847205	A	0.998596946272574	0	lncRNA	26353-2_{3001..3890}	lnc-KRTAP9-7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KRTAP9-7-1:2	chr17	 39582606	 39583495	+	lnc-KRTAP9-7-1	lnc-KRTAP9-7-1:2	ENSG00000234859.1	AC003958.2	KRT37	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_KRT38:range=chr17:39593664-395971735'pad=0,hg19_refFlat_KRT38:range=chr17:39593664-395971735'pad=0 3'pad=0 strand=- repeatMasking=none,-95.90;hg19_refFlat_KRT37:range=chr17:39577130-395807755'pad=0,hg19_refFlat_KRT37:range=chr17:39577130-395807755'pad=0 3'pad=0 strand=- repeatMasking=none,-103.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_KRT33B:range=chr17:39520088-395260025'pad=0,hg19_refFlat_KRT33B:range=chr17:39520088-395260025'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20chr17:39576809-39580822"	NA	inner
CUST_10151_PI429285431	2.6935976	A	2.2265892	A	1.38224025451101	0	lncRNA	11675-1_{1..795}	lnc-ITPRIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITPRIP-1:1	chr10	106112876	106113670	-	lnc-ITPRIP-1	lnc-ITPRIP-1:1	XLOC_008937	linc-ITPRIP-1	CCDC147	NA	chr10:106113522-106123333	inter
CUST_39463_PI429285431	3.6309903	P	3.7928586	P	0.893866757479459	0	lncRNA	40407-1_{1..1995}	n387016|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wjo.1||2.1937500|-0.2270610	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387016|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wjo.1||2.1937500|-0.2270610	chr17	 43580624	 43582618	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40"	NA	inter
CUST_302_PI429285431	1.6153083	A	1.0001402	A	1.53173646162893	0	lncRNA	294-1_{1..1601}	"transcript_id ""ENST00000605506.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000605506.1"" | genecode_v17"	chr1	 84542014	 84543614	-	ENSG00000271576.1	ENST00000605506.1	RP11-486G15.2	RP11-486G15.2-001	PRKACB	NA	chr1:84543745-84553614	inter
CUST_51555_PI429285431	3.160861	A	2.0870197	A	2.10503073812798	0	lncRNA	55120-1_{1..1873}	hg19_lincRNAsTranscripts_TCONS_l2_00011115 range=chr17:16826104-16828924 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011115 range=chr17:16826104-16828924 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 16826104	 16827976	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46287_PI429285431	6.8704076	P	6.763421	P	1.07697637300456	0	lncRNA	50522-2_{3001..4521}	"gi|223634007|ref|NR_026862.1| Homo sapiens protein phosphatase 1, regulatory subunit 3E (PPP1R3E), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223634007|ref|NR_026862.1| Homo sapiens protein phosphatase 1, regulatory subunit 3E (PPP1R3E), non-coding RNA"	NA	NA	NA	NA	NA	NR_026862.1	NA	NA	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10"	NA	Unknown
CUST_51309_PI429285431	7.3389983	P	7.1582217	P	1.13349387870367	0	lncRNA	54913-1_{1..2477}	hg19_lincRNAsTranscripts_TCONS_l2_00008581 range=chr15:40616037-40618904 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008581 range=chr15:40616037-40618904 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 40616037	 40618513	+	NA	NA	NA	NA	C15orf52	NA	chr15:40623653-40628904	inter
CUST_22679_PI429285431	2.439605	A	2.377692	A	1.04384897745879	0	lncRNA	24262-1_{1..521}	lnc-FAM5B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FAM5B-2:1	chr1	176478808	176479328	+	lnc-FAM5B-2	lnc-FAM5B-2:1	ENSG00000230220.1	RP4-652L8.1	PAPPA2	NA	chr1:176468808-176488979	inner
CUST_39111_PI429285431	0.97601575	A	1.2275591	A	0.839997331579325	0	lncRNA	40088-1_{1..1012}	n385675|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bdy.1||-0.9993910|-0.1675752	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385675|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bdy.1||-0.9993910|-0.1675752	chr9	111922745	111923756	-	NA	NA	NA	NA	C9orf4	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-20.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10chr9:111912745-111929571"	NA	inner
CUST_14411_PI429285431	6.528771	P	6.653918	P	0.916910612005962	0	lncRNA	16071-1_{1..329}	lnc-PTAR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTAR1-1:1	chr9	 72432605	 72432933	-	lnc-PTAR1-1	lnc-PTAR1-1:1	XLOC_007726	linc-PTAR1-5	C9orf135	NA	chr9:72435731-72442722	inter
LNCA_21_P0008181	2.4304056	A	2.2083457	A	1.16639779705525	0	lncRNA	TCONS_00022053	NA	NA	NA	NA	XLOC_010657	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010657), lincRNA [TCONS_00022053]"	chr13:77174626-77174567	hs|13q22.2	Agilent_HUMAN_G3V2	TCONS_00022053	TCONS_00022053	chr13	 77174567	 77174626	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008023	5.85701	P	6.2476306	P	0.762801401796742	0	lncRNA	ENST00000446989	NA	NA	NA	NA	XLOC_010746	NA	ENST00000446989	NA	NA	"BROAD Institute lincRNA (XLOC_010746), lincRNA [TCONS_00021703]"	chr13:115095267-115095208	hs|13q34	Agilent_HUMAN_G3V2	ENST00000446989	ENST00000446989	chr13	115095208	115095267	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32582_PI429285431	0.91797894	A	0.9210514	A	0.997872599145366	0	lncRNA	34245-1_{1..1464}	n339201|BC015844|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1633|NULL|-1.2494900|-0.3907793	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339201|BC015844|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1633|NULL|-1.2494900|-0.3907793	chr16	 47310407	 47311870	-	NA	NA	NA	NA	ITFG1	NA	chr16:47300407-47321851	inner
LNCA_21_P0009013	0.9288343	A	0.91557294	A	1.00923445115353	0	lncRNA	TCONS_00024589	NA	NA	NA	NA	XLOC_011881	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011881), lincRNA [TCONS_00024589]"	chr16:14114140-14114081	hs|16p13.12	Agilent_HUMAN_G3V2	TCONS_00024589	TCONS_00024589	chr16	 14114081	 14114140	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39899_PI429285431	2.1872287	A	3.2413025	P	0.481606310164604	0	lncRNA	40783-1_{1..1202}	n406608|NR_024128|lncRNA|Homosapiens||RefGeneNoncode|NR_024128||6.7405800|-0.0562865	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406608|NR_024128|lncRNA|Homosapiens||RefGeneNoncode|NR_024128||6.7405800|-0.0562865	chr17	  3213538	  3214739	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28327_PI429285431	0.9091989	A	0.9006751	A	1.00592573605892	0	lncRNA	29972-1_{1..474}	n325632|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045757|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045757|-1.2850700|-0.4091140	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325632|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045757|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045757|-1.2850700|-0.4091140	chr13	109178629	109179102	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26562_PI429285431	2.751944	A	1.486516	A	2.40398517632938	0	lncRNA	28067-1_{1..521}	lnc-CUL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CUL2-1:1	chr10	 35415744	 35416264	-	lnc-CUL2-1	lnc-CUL2-1:1	ENSG00000230534.1	RP11-297A16.2	CREM	NA	chr10:35415801-35425948	inter
CUST_5947_PI429285431	3.5039756	P	3.3422697	P	1.1186090442079	0	lncRNA	5876-1_{1..294}	"transcript_id ""ENST00000588501.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588501.1"" | genecode_v17"	chr17	 67573392	 67573685	+	ENSG00000227517.2	ENST00000588501.1	AC003051.1	AC003051.1-002	NA	NA	NA	inter
CUST_15667_PI429285431	4.0569477	P	4.5000844	P	0.735533675442031	0	lncRNA	17355-1_{1..653}	lnc-CDC40-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDC40-2:1	chr6	110874204	110874856	+	lnc-CDC40-2	lnc-CDC40-2:1	XLOC_005424	linc-AMD1-2	CDK19	NA	chr6:110883378-110884405	inter
CUST_19904_PI429285431	1.4203148	A	0.89878374	A	1.4354778406941	0	lncRNA	21559-1_{1..982}	lnc-AC091801.1.1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC091801.1.1-6:1	chr7	  3341861	  3342842	-	lnc-AC091801.1.1-6	lnc-AC091801.1.1-6:1	ENSG00000236708.1	AC073316.1	SDK1	NA	chr7:3341080-3352084	inner
CUST_17312_PI429285431	8.625028	P	7.894166	P	1.65963041278361	0	lncRNA	19030-1_{1..522}	lnc-FOXL1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXL1-2:2	chr16	 86729779	 86730300	+	lnc-FOXL1-2	lnc-FOXL1-2:2	XLOC_011815	linc-MAP1LC3B-6	NA	NA	NA	inter
CUST_40734_PI429285431	5.624466	P	5.5424676	P	1.05848322097903	0	lncRNA	41468-1_{1..3000}	n410439|NR_037573|lncRNA|Homosapiens||RefGeneNoncode|NR_037573||1.6927100|-0.3033670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410439|NR_037573|lncRNA|Homosapiens||RefGeneNoncode|NR_037573||1.6927100|-0.3033670	chr16	 23652686	 23655685	+	NA	NA	NA	NA	PLK1	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30chr16:23690201-23695068"	NA	inner
CUST_27492_PI429285431	0.9203258	A	1.0685451	A	0.902363551301026	0	lncRNA	29063-1_{1..566}	n324669|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000321237|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000321237|-1.0634200|-0.2105629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324669|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000321237|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000321237|-1.0634200|-0.2105629	chr22	 37678691	 37679256	+	NA	NA	NA	NA	CYTH4	NA	chr22:37678495-37689367	inner
CUST_39669_PI429285431	1.797411	A	1.2491732	A	1.46229845977585	0	lncRNA	40609-1_{1..1820}	n405298|NR_001434_7|lncRNA|Homosapiens||RefGeneNoncode|NR_001434_7||-1.0131500|-0.2301882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405298|NR_001434_7|lncRNA|Homosapiens||RefGeneNoncode|NR_001434_7||-1.0131500|-0.2301882	chr6	  1369124	  1370943	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30038_PI429285431	1.0799273	A	0.8996148	A	1.13312930414693	0	lncRNA	31807-1_{1..570}	n334522|U38228|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219542|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219542|1.9831900|-0.1421020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334522|U38228|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219542|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219542|1.9831900|-0.1421020	chr10	 71029756	 71030325	+	NA	NA	NA	NA	HK1	NA	chr10:71029756-71108449	inner
CUST_6246_PI429285431	0.91655064	A	0.90812343	A	1.00585839049274	0	lncRNA	6171-1_{1..755}	"transcript_id ""ENST00000577835.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577835.1"" | genecode_v17"	chr18	 66094267	 66095021	+	ENSG00000265425.1	ENST00000577835.1	RP11-128D14.1	RP11-128D14.1-001	NA	NA	NA	inter
CUST_12929_PI429285431	2.837351	A	2.5993772	A	1.17933517480204	0	lncRNA	14557-1_{1..621}	lnc-IL6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL6-3:1	chr7	 22630782	 22631402	+	lnc-IL6-3	lnc-IL6-3:1	XLOC_006009	linc-IL6-1	NA	NA	NA	inter
CUST_46943_PI429285431	2.0330138	A	2.558815	A	0.694573271859722	0	lncRNA	51051-1_{1..970}	"gi|338753404|ref|NR_040018.1| Homo sapiens uncharacterized LOC100507410 (LOC100507410), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338753404|ref|NR_040018.1| Homo sapiens uncharacterized LOC100507410 (LOC100507410), transcript variant 1, non-coding RNA"	Chr17	 77015291	 77016260	-	100507410	NR_040018.1	NA	NA	NA	NA	NA	inter
CUST_21283_PI429285431	1.3576922	A	1.6098291	A	0.839651813050642	0	lncRNA	22908-1_{1..538}	lnc-PTGR2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTGR2-1:2	chr14	 74269588	 74270125	+	lnc-PTGR2-1	lnc-PTGR2-1:2	ENSG00000259065.1	RP5-1021I20.1	NA	NA	NA	inter
CUST_21864_PI429285431	2.4927843	A	1.4374242	A	2.07823687456553	0	lncRNA	23474-1_{1..2388}	lnc-OBFC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-OBFC1-1:1	chr10	105637132	105639519	-	lnc-OBFC1-1	lnc-OBFC1-1:1	ENSG00000260461.1	RP11-541N10.3	OBFC1	NA	chr10:105637316-105649519	inner
CUST_45084_PI429285431	1.0364869	A	2.2150924	A	0.44177831198659	0	lncRNA	49568-1_{1..969}	"gi|396941687|ref|NR_073060.1| Homo sapiens chromosome 7 open reading frame 55 (C7orf55), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|396941687|ref|NR_073060.1| Homo sapiens chromosome 7 open reading frame 55 (C7orf55), transcript variant 4, non-coding RNA"	Chr7	139025196	139026164	+	154791	NR_073060.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-26.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.12;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20"	NA	inter
CUST_9773_PI429285431	7.745914	P	7.8152404	P	0.95308289233277	0	lncRNA	11290-1_{1..1124}	lnc-FOXG1-6:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXG1-6:7	chr14	 27249688	 27250811	+	lnc-FOXG1-6	lnc-FOXG1-6:7	XLOC_010776	linc-FOXG1-5	NA	NA	NA	inter
CUST_6689_PI429285431	0.9072045	A	1.2216954	A	0.804134704724924	0	lncRNA	6638-1_{1..2004}	"transcript_id ""ENST00000422519.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422519.1"" | genecode_v17"	chr20	 37034658	 37036661	-	ENSG00000224635.1	ENST00000422519.1	RP4-564F22.5	RP4-564F22.5-001	NA	NA	NA	inter
CUST_7387_PI429285431	2.18811	A	1.6609187	A	1.44112082743	0	lncRNA	9033-1_{1..1500}	lnc-TTC8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTC8-1:1	chr14	 89259023	 89260522	+	lnc-TTC8-1	lnc-TTC8-1:1	ENSG00000247546	ENST00000500377	EML5	"hg19_refFlat_EML5:range=chr14:89082162-892588475'pad=0,hg19_refFlat_EML5:range=chr14:89082162-892588475'pad=0 3'pad=0 strand=- repeatMasking=none,-105.00chr14:89249023-89259096"	NA	inner
CUST_27686_PI429285431	0.8950197	A	0.90049464	A	0.996212252456917	0	lncRNA	29264-1_{1..615}	n324893|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158278|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158278|-1.0482400|-0.2207514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324893|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158278|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158278|-1.0482400|-0.2207514	chr21	 18906250	 18906864	-	NA	NA	NA	NA	CXADR	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10chr21:18896250-18965897"	NA	inner
CUST_6515_PI429285431	2.2831156	A	2.330701	A	0.967554344291028	0	lncRNA	6457-1_{1..3000}	"transcript_id ""ENST00000599320.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599320.1"" | genecode_v17"	chr19	 39425976	 39428975	-	ENSG00000269486.1	ENST00000599320.1	CTC-360G5.9	CTC-360G5.9-001	FBXO17	NA	chr19:39432042-39439272	inter
CUST_37742_PI429285431	0.92069495	A	0.91174614	A	1.00622211988566	0	lncRNA	38836-1_{1..438}	n346245|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1795|NULL|-1.5473100|-0.3606230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346245|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1795|NULL|-1.5473100|-0.3606230	chr9	 99855945	 99856382	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004832	6.2067122	P	6.053875	P	1.11175369530306	0	lncRNA	TCONS_00011686	NA	NA	NA	NA	XLOC_005163	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005163), lincRNA [TCONS_00011686]"	chr6:8790489-8790548	hs|6p24.3	Agilent_HUMAN_G3V2	TCONS_00011686	TCONS_00011686	chr6	  8790489	  8790548	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27936_PI429285431	1.0686324	A	1.6017628	A	0.691053638596046	0	lncRNA	29537-1_{1..747}	n325180|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331942|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331942|-0.9944760|-0.0943424	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325180|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331942|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331942|-0.9944760|-0.0943424	chr2	111084961	111085707	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15071_PI429285431	0.9123988	A	0.9029254	A	1.00658806696885	0	lncRNA	16735-1_{1..954}	lnc-RP11-32K4.2.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-32K4.2.1-2:3	chr8	 64654688	 64655641	+	lnc-RP11-32K4.2.1-2	lnc-RP11-32K4.2.1-2:3	XLOC_006821	linc-BHLHE22-3	NA	NA	NA	inter
CUST_46440_PI429285431	1.5995817	A	2.052747	A	0.73043849285965	0	lncRNA	50648-1_{1..642}	"gi|410170709|ref|XR_171062.1| PREDICTED: Homo sapiens uncharacterized LOC101060036 (LOC101060036), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170709|ref|XR_171062.1| PREDICTED: Homo sapiens uncharacterized LOC101060036 (LOC101060036), misc_RNA"	NA	NA	NA	NA	NA	XR_171062.1	NA	NA	NA	NA	NA	Unknown
CUST_13815_PI429285431	3.2287521	P	3.4236033	P	0.873663001134319	0	lncRNA	15458-1_{1..277}	lnc-AC112715.2.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC112715.2.1-1:2	chr2	238166073	238166349	+	lnc-AC112715.2.1-1	lnc-AC112715.2.1-1:2	XLOC_001910	linc-MLPH-2	NA	NA	NA	inter
CUST_26344_PI429285431	1.3129023	A	0.92610806	A	1.30748485917999	0	lncRNA	27851-1_{1..404}	lnc-GPRC5A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPRC5A-2:2	chr12	 13105672	 13106075	+	lnc-GPRC5A-2	lnc-GPRC5A-2:2	ENSG00000256893.1	RP11-392P7.6	GPRC5D	NA	chr12:13095672-13103318	inter
CUST_6636_PI429285431	0.91591907	A	1.2341131	A	0.802073287181099	0	lncRNA	6582-1_{1..874}	"transcript_id ""ENST00000449581.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449581.1"" | genecode_v17"	chr20	  7127114	  7127987	-	ENSG00000228888.1	ENST00000449581.1	RP4-764O22.2	RP4-764O22.2-001	NA	NA	NA	inter
CUST_27869_PI429285431	0.9246895	A	1.3171018	A	0.761854657740186	0	lncRNA	29462-1_{1..561}	n325105|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329067|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329067|-1.0923500|-0.2896453	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325105|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329067|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329067|-1.0923500|-0.2896453	chr2	237306763	237307323	+	NA	NA	NA	NA	IQCA1	NA	chr2:237296763-237336188	inter
CUST_25748_PI429285431	1.6063383	A	1.0968785	A	1.42351707675388	0	lncRNA	27274-1_{1..566}	lnc-GPRC5A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPRC5A-2:1	chr12	 13132934	 13133499	+	lnc-GPRC5A-2	lnc-GPRC5A-2:1	ENSG00000247498.2	RP11-392P7.8	HEBP1	NA	chr12:13127798-13143241	inner
CUST_39966_PI429285431	0.9022891	A	1.3769767	A	0.719622599622419	0	lncRNA	40837-1_{1..2694}	n407027|NR_024523|lncRNA|Homosapiens||RefGeneNoncode|NR_024523||4.8537300|-0.3165084	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n407027|NR_024523|lncRNA|Homosapiens||RefGeneNoncode|NR_024523||4.8537300|-0.3165084	chr19	 21933546	 21936239	+	NA	NA	NA	NA	ZNF100	NA	chr19:21923546-21946240	inner
CUST_44549_PI429285431	5.2519507	P	4.0939293	P	2.23151174519843	0	lncRNA	49134-1_{1..2410}	"gi|385137124|ref|NR_047650.1| Homo sapiens solute carrier family 38, member 9 (SLC38A9), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137124|ref|NR_047650.1| Homo sapiens solute carrier family 38, member 9 (SLC38A9), transcript variant 4, non-coding RNA"	Chr5	 54921673	 54924082	-	153129	NR_047650.1	NA	NA	NA	NA	NA	inter
CUST_4672_PI429285431	0.9192613	A	0.92688936	A	0.99472658524622	0	lncRNA	4618-1_{1..685}	"transcript_id ""ENST00000435401.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435401.1"" | genecode_v17"	chr13	 90200945	 90201629	-	ENSG00000236176.2	ENST00000435401.1	LINC00353	LINC00353-002	NA	NA	NA	inter
LNCA_21_P0008545	5.9216027	P	6.0171285	P	0.935931078833314	0	lncRNA	TCONS_00023147	NA	NA	NA	NA	XLOC_011102	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011102), lincRNA [TCONS_00023147]"	chr14:90921552-90921493	hs|14q32.11	Agilent_HUMAN_G3V2	TCONS_00023147	TCONS_00023147	chr14	 90921493	 90921552	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22676_PI429285431	0.92649627	A	0.958594	A	0.977997220425695	0	lncRNA	24259-1_{1..850}	lnc-RPL27A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPL27A-2:1	chr11	  8806703	  8807552	+	lnc-RPL27A-2	lnc-RPL27A-2:1	ENSG00000255159.1	RP11-318C2.1	ST5	NA	chr11:8796703-8817318	inner
CUST_21610_PI429285431	0.909455	A	0.90719616	A	1.00156693493897	0	lncRNA	23223-1_{1..582}	lnc-DHX36-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHX36-1:3	chr3	153838861	153839442	-	lnc-DHX36-1	lnc-DHX36-1:3	ENSG00000243069.1	ARHGEF26-AS1	ARHGEF26	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10chr3:153839149-153849052"	NA	inner
CUST_26914_PI429285431	0.9277874	A	0.92208934	A	1.00395740414955	0	lncRNA	28432-1_{1..436}	n323990|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053785|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053785|-1.0579000|-0.3449402	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323990|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053785|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053785|-1.0579000|-0.3449402	chr9	116458404	116458839	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35357_PI429285431	0.9011715	A	0.898713	A	1.00170555515093	0	lncRNA	36767-1_{1..1208}	n342400|BC046635|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4892|NULL|-0.7698600|-0.2993701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n342400|BC046635|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4892|NULL|-0.7698600|-0.2993701	chr13	 47032198	 47033405	-	NA	NA	NA	NA	LOC731932	NA	chr13:47022198-47035198	inter
CUST_30421_PI429285431	7.7358294	P	7.8383827	P	0.931383158281043	0	lncRNA	32201-1_{1..462}	n335556|CR407629|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267126|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267126|1.2145000|-0.2017386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335556|CR407629|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267126|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267126|1.2145000|-0.2017386	chr12	 16507187	 16507648	+	NA	NA	NA	NA	MGST1	NA	chr12:16500076-16517344	inner
CUST_6289_PI429285431	0.9176661	A	1.7602566	A	0.557641369931142	0	lncRNA	6213-1_{1..744}	"transcript_id ""ENST00000589495.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589495.1"" | genecode_v17"	chr19	    68403	    69146	+	ENSG00000267111.1	ENST00000589495.1	AC008993.2	AC008993.2-001	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.01;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10"	NA	inter
LNCA_21_P0007176	4.652903	P	5.168766	P	0.699374451627798	0	lncRNA	TCONS_00019237	NA	NA	NA	NA	XLOC_009067	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009067), lincRNA [TCONS_00019237]"	chr11:10955205-10955264	hs|11p15.3	Agilent_HUMAN_G3V2	TCONS_00019237	TCONS_00019237	chr11	 10955205	 10955264	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16125_PI429285431	7.6124105	P	7.567732	P	1.03145329760225	0	lncRNA	17831-1_{1..975}	lnc-TMEM132C-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132C-6:3	chr12	127636635	127637609	+	lnc-TMEM132C-6	lnc-TMEM132C-6:3	XLOC_009944	linc-TMEM132C-5	NA	NA	NA	inter
CUST_45642_PI429285431	2.9540384	P	2.0805113	A	1.83213663612368	0	lncRNA	50021-1_{1..3000}	"gi|226061013|ref|NR_027430.1| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226061013|ref|NR_027430.1| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 3, non-coding RNA"	Chr10	 81805989	 81808988	-	219347	NR_027430.1	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80"	NA	inter
CUST_36602_PI429285431	2.564138	A	2.53199	A	1.02253342262114	0	lncRNA	37796-1_{1..518}	n345099|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_648|NULL|-1.2746800|-0.2996144	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345099|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_648|NULL|-1.2746800|-0.2996144	chrX	138928818	138929335	-	NA	NA	NA	NA	NA	"hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00"	NA	inter
CUST_42446_PI429285431	5.4806	P	5.728945	P	0.841861610304628	0	lncRNA	45172-1_{1..160}	ENST00000516965 ncrna:snoRNA chromosome:GRCh37:15:64634738:64634897:1 gene:ENSG00000252774 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516965 ncrna:snoRNA chromosome:GRCh37:15:64634738:64634897:1 gene:ENSG00000252774 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 64634738	 64634897	+	ENSG00000252774	ENST00000516965	NA	NA	CSNK1G1	NA	chr15:64624738-64644897	inner
CUST_11934_PI429285431	0.92320764	A	2.263872	A	0.394838791089128	0	lncRNA	13514-1_{1..580}	lnc-MIPOL1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MIPOL1-4:1	chr14	 38207981	 38208560	+	lnc-MIPOL1-4	lnc-MIPOL1-4:1	XLOC_010807	linc-SSTR1-2	TTC6	NA	chr14:38197981-38218450	inter
CUST_33583_PI429285431	1.2469698	A	0.92455965	A	1.25041773871446	0	lncRNA	35148-1_{1..248}	n340336|AF009322|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2797|NULL|-1.1611000|-0.3854466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340336|AF009322|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2797|NULL|-1.1611000|-0.3854466	chr5	  9314907	  9315154	+	NA	NA	NA	NA	SEMA5A	NA	chr5:9304907-9325155	inner
CUST_35975_PI429285431	1.5534867	A	1.5733438	A	0.98633039640291	0	lncRNA	37322-1_{1..2735}	n344597|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_145|NULL|-1.2709800|-0.2166755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344597|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_145|NULL|-1.2709800|-0.2166755	chr6	 14280369	 14283103	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17720_PI429285431	6.379583	P	6.409776	P	0.979289282043936	0	lncRNA	19450-1_{1..2060}	lnc-CLCN3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLCN3-1:3	chr4	170862377	170864436	+	lnc-CLCN3-1	lnc-CLCN3-1:3	XLOC_003772	linc-GALNTL6-7	NA	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70"	NA	inter
LNCA_21_P0013265	1.372716	A	1.2219986	A	1.11012135799091	0	lncRNA	TCONS_l2_00026181	NA	NA	NA	NA	XLOC_l2_013583	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013583), lincRNA [TCONS_l2_00026181]"	chr7:125121334-125121393	hs|7q31.33	Agilent_HUMAN_G3V2	TCONS_l2_00026181	TCONS_l2_00026181	chr7	125121334	125121393	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30743_PI429285431	5.4470944	P	5.68132	P	0.850141209684607	0	lncRNA	32528-1_{1..239}	n336311|Y18488|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326090_11|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326090_11|-0.9396300|-0.3141691	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336311|Y18488|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326090_11|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326090_11|-0.9396300|-0.3141691	chr6	  2885779	  2886017	+	NA	NA	NA	NA	SERPINB9	NA	chr6:2887504-2897241	inter
CUST_5637_PI429285431	3.2421403	P	3.5707557	P	0.796300351741841	0	lncRNA	5565-1_{1..531}	"transcript_id ""ENST00000565531.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565531.1"" | genecode_v17"	chr16	 80074559	 80075089	+	ENSG00000260237.1	ENST00000565531.1	RP11-148M9.1	RP11-148M9.1-001	NA	NA	NA	inter
CUST_959_PI429285431	3.1049113	P	2.3577461	A	1.67849146376583	0	lncRNA	948-1_{1..754}	"transcript_id ""ENST00000594834.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594834.1"" | genecode_v17"	chr2	 98081774	 98082527	-	ENSG00000230606.5	ENST00000594834.1	AC159540.1	AC159540.1-006	NA	NA	NA	inter
CUST_50488_PI429285431	8.166887	P	7.549036	P	1.53458759725135	0	lncRNA	54184-1_{1..623}	hg19_lincRNAsTranscripts_TCONS_l2_00030292 range=chrX:100779083-100786916 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030292 range=chrX:100779083-100786916 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	100779083	100779705	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19045_PI429285431	0.9949944	A	1.0167739	A	0.985016980355537	0	lncRNA	20735-1_{1..514}	lnc-TREML1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TREML1-1:1	chr6	 41108336	 41108849	-	lnc-TREML1-1	lnc-TREML1-1:1	ENSG00000228342	RP1-238O23.4	TREML1	NA	chr6:41117342-41118570	inter
CUST_48267_PI429285431	2.8475823	A	3.0016634	A	0.898704605197952	0	lncRNA	52130-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00000991 range=chr1:2568357-2574635 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000991 range=chr1:2568357-2574635 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	  2568357	  2571356	-	NA	NA	NA	NA	TTC34	NA	chr1:2572807-2584635	inner
CUST_29964_PI429285431	2.8345637	A	1.7638519	A	2.10046944579252	0	lncRNA	31730-1_{1..295}	n334170|S38776|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000215569|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000215569|0.0096730|-0.2228243	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334170|S38776|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000215569|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000215569|0.0096730|-0.2228243	chrX	 31241146	 31241440	-	NA	NA	NA	NA	DMD	NA	chrX:31231146-31295069	inner
CUST_406_PI429285431	7.2824926	P	7.438312	P	0.897622410144771	0	lncRNA	398-1_{1..787}	"transcript_id ""ENST00000443766.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443766.2"" | genecode_v17"	chr1	143399412	143400198	-	ENSG00000185044.9	ENST00000443766.2	RP11-435B5.4	RP11-435B5.4-008	NA	NA	NA	inter
CUST_24788_PI429285431	5.733134	P	5.1354876	P	1.51324585573167	0	lncRNA	26331-1_{1..396}	lnc-RP11-382A20.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-382A20.3.1-1:1	chr15	 83783085	 83783480	-	lnc-RP11-382A20.3.1-1	lnc-RP11-382A20.3.1-1:1	ENSG00000260579.1	RP11-382A20.2	TM6SF1	NA	chr15:83776324-83793318	inner
CUST_20091_PI429285431	4.9760437	P	5.102112	P	0.916325263021459	0	lncRNA	21739-1_{1..686}	lnc-LSS-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LSS-1:2	chr21	 47672344	 47673029	-	lnc-LSS-1	lnc-LSS-1:2	ENSG00000239415.1	AP001469.9	MCM3AP	NA	chr21:47662344-47682748	inner
CUST_43795_PI429285431	2.4073808	A	2.5580611	A	0.900825579917583	0	lncRNA	48525-2_{3001..3469}	"gi|386869314|ref|NR_048552.1| Homo sapiens nucleolar protein 10 (NOL10), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386869314|ref|NR_048552.1| Homo sapiens nucleolar protein 10 (NOL10), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_048552.1	NA	NA	NA	NA	NA	Unknown
CUST_51016_PI429285431	3.2081153	P	2.8214293	A	1.30738676717278	0	lncRNA	54662-1_{1..339}	hg19_lincRNAsTranscripts_TCONS_l2_00007038 range=chr13:114943052-114961897 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007038 range=chr13:114943052-114961897 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	114943052	114943390	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49265_PI429285431	0.99607277	A	1.089078	A	0.937567697618265	0	lncRNA	53084-1_{1..454}	hg19_lincRNAsTranscripts_TCONS_l2_00023526 range=chr5:121495886-121515756 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023526 range=chr5:121495886-121515756 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	121495886	121496339	+	NA	NA	NA	NA	LOC100505841	NA	chr5:121495871-121518358	inner
LNCA_21_P0007513	1.0392069	A	1.0384351	A	1.00053511411646	0	lncRNA	TCONS_00020279	NA	NA	NA	NA	XLOC_009624	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009624), lincRNA [TCONS_00020279]"	chr12:4322298-4322357	hs|12p13.32	Agilent_HUMAN_G3V2	TCONS_00020279	TCONS_00020279	chr12	  4322298	  4322357	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35707_PI429285431	14.935202	P	14.385006	P	1.46428461552457	0	lncRNA	37127-1_{1..2144}	n342874|AK094841|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5379|NULL|1.7702300|-0.3961528	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342874|AK094841|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5379|NULL|1.7702300|-0.3961528	chr9	102902687	102904830	+	NA	NA	NA	NA	INVS	"hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60chr9:102892687-102914291"	NA	inner
CUST_6709_PI429285431	0.9105767	A	0.9061754	A	1.00305540695544	0	lncRNA	6657-1_{1..425}	"transcript_id ""ENST00000444478.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444478.1"" | genecode_v17"	chr20	 48782899	 48783323	+	ENSG00000234698.1	ENST00000444478.1	RP11-112L6.2	RP11-112L6.2-001	NA	NA	NA	inter
CUST_19992_PI429285431	6.6232014	P	7.107912	P	0.714640410068435	0	lncRNA	21645-1_{1..2644}	lnc-AC006435.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AC006435.1-1:1	chr17	  2318482	  2321125	-	lnc-AC006435.1-1	lnc-AC006435.1-1:1	ENSG00000205821.3	RP1-59D14.3	METTL16	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-20.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr17:2319343-2329379"	NA	inner
CUST_41818_PI429285431	0.93451345	A	1.2090781	A	0.826699746777347	0	lncRNA	43416-1_{1..84}	ENST00000385243 ncrna:miRNA chromosome:GRCh37:14:101526092:101526175:1 gene:ENSG00000207978 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385243 ncrna:miRNA chromosome:GRCh37:14:101526092:101526175:1 gene:ENSG00000207978 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101526092	101526175	+	ENSG00000207978	ENST00000385243	NA	NA	NA	NA	NA	inter
CUST_26675_PI429285431	1.2427443	A	1.464362	A	0.857603262958452	0	lncRNA	28172-1_{1..601}	lncrnadb|megamind_Human_antisense_BIRC6_homologue_BX093813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncrnadb20130808	"lncrnadb20130808,"	>lncrnadb|megamind_Human_antisense_BIRC6_homologue_BX093813	NA	NA	      600	NA	NA	NA	NA	NA	NA	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20"	NA	Unknown
CUST_260_PI429285431	0.9779412	A	1.4439698	A	0.723954734362091	0	lncRNA	252-1_{1..490}	"transcript_id ""ENST00000425352.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425352.1"" | genecode_v17"	chr1	 63466168	 63466657	-	ENSG00000229537.1	ENST00000425352.1	RP11-5P4.1	RP11-5P4.1-002	NA	NA	NA	inter
CUST_27181_PI429285431	0.9120164	A	1.3876	A	0.719175809657548	0	lncRNA	28721-1_{1..359}	n324310|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043034|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043034|-1.2507300|-0.3379820	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324310|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043034|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043034|-1.2507300|-0.3379820	chr6	166106678	166107036	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21063_PI429285431	4.4008718	P	4.5369616	P	0.909982180825895	0	lncRNA	22690-1_{1..1234}	lnc-SEC14L1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC14L1-1:7	chr17	 75090152	 75091385	+	lnc-SEC14L1-1	lnc-SEC14L1-1:7	ENSG00000234912.3	LINC00338	SEC14L1	"hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30chr17:75084725-75101065"	NA	inner
CUST_52199_PI429285431	0.92275554	A	0.9255866	A	0.998039582875801	0	lncRNA	55715-1_{1..239}	hg19_lincRNAsTranscripts_TCONS_l2_00017992 range=chr22:27028314-27042295 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017992 range=chr22:27028314-27042295 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 27028314	 27028552	-	NA	NA	NA	NA	CRYBA4	NA	chr22:27018314-27026636	inter
CUST_43668_PI429285431	3.7390854	P	2.8028474	A	1.91353196365696	0	lncRNA	48423-1_{1..2252}	"gi|312922348|ref|NR_037606.1| Homo sapiens mitochondrial ribosomal protein S14 (MRPS14), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|312922348|ref|NR_037606.1| Homo sapiens mitochondrial ribosomal protein S14 (MRPS14), transcript variant 2, non-coding RNA"	Chr1	174982094	174984345	-	63931	NR_037606.1	NA	NA	NA	NA	NA	inter
CUST_19395_PI429285431	2.2248573	A	2.5459132	A	0.800483793767966	0	lncRNA	21057-1_{1..657}	lnc-KIAA1598-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1598-1:2	chr10	118609077	118609733	-	lnc-KIAA1598-1	lnc-KIAA1598-1:2	ENSG00000225302.1	RP11-539I5.1	ENO4	"hg19_refFlat_ENO4:range=chr10:118609078-1186411805'pad=0,hg19_refFlat_ENO4:range=chr10:118609078-1186411805'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70chr10:118609023-118619212"	NA	inner
CUST_27479_PI429285431	2.2384524	A	2.5230286	A	0.820982741813341	0	lncRNA	29049-1_{1..545}	n324655|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322253|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322253|-1.0829000|-0.3669304	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324655|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322253|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322253|-1.0829000|-0.3669304	chr22	 44210407	 44210951	-	NA	NA	NA	NA	EFCAB6	NA	chr22:44200407-44208217	inner
CUST_9434_PI429285431	0.9749273	A	0.9172306	A	1.04080276511416	0	lncRNA	10940-1_{1..465}	lnc-RAD23B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAD23B-3:1	chr9	110017675	110018139	+	lnc-RAD23B-3	lnc-RAD23B-3:1	XLOC_007504	linc-RAD23B-1	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90"	NA	inter
CUST_20555_PI429285431	1.3224473	A	1.1508411	A	1.126311746948	0	lncRNA	22196-1_{1..1416}	lnc-ADA-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADA-1:4	chr20	 43324644	 43326059	-	lnc-ADA-1	lnc-ADA-1:4	ENSG00000132832.4	RP11-445H22.3	NA	NA	NA	inter
CUST_51753_PI429285431	0.9253535	A	0.916684	A	1.00602733118241	0	lncRNA	55305-1_{1..1263}	hg19_lincRNAsTranscripts_TCONS_l2_00012265 range=chr19:7853178-7884749 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012265 range=chr19:7853178-7884749 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	  7853178	  7854440	+	NA	NA	NA	NA	EVI5L	NA	chr19:7877603-7894749	inter
CUST_13686_PI429285431	0.91472995	A	0.9121594	A	1.00178335777942	0	lncRNA	15326-1_{1..291}	lnc-STAU2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STAU2-1:1	chr8	 74282682	 74282972	-	lnc-STAU2-1	lnc-STAU2-1:1	XLOC_007120	linc-RPL7	NA	NA	NA	inter
LNCA_21_P0014804	0.99475455	A	0.9264311	A	1.04849752069235	0	lncRNA	XR_132622	XR_132622	XR_132622	NA	Hs.729590	LOC100506201	uncharacterized LOC100506201	NA	THC2651211	NA	"PREDICTED: Homo sapiens hypothetical LOC100506201, transcript variant 4 (LOC100506201), miscRNA [XR_132622]"	chr16:74343955-74339469	hs|16q23.1	Agilent_HUMAN_G3V2	XR_132622	XR_132622	chr16	 74339469	 74343955	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14578_PI429285431	0.92640096	A	0.91347593	A	1.00899919959258	0	lncRNA	16244-1_{1..395}	lnc-SGCE-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SGCE-1:3	chr7	 93984354	 93984748	-	lnc-SGCE-1	lnc-SGCE-1:3	XLOC_006525	linc-BET1-1	NA	NA	NA	inter
CUST_4753_PI429285431	0.93132704	A	0.9246491	A	1.00463952470421	0	lncRNA	4697-1_{1..388}	"transcript_id ""ENST00000552926.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552926.1"" | genecode_v17"	chr14	 27342369	 27342756	+	ENSG00000257612.1	ENST00000552926.1	RP11-384J4.1	RP11-384J4.1-002	NA	NA	NA	inter
CUST_8926_PI429285431	2.0237408	A	2.8591833	A	0.560411124680494	0	lncRNA	10461-1_{1..531}	lnc-GLT1D1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GLT1D1-1:7	chr12	129597610	129598140	+	lnc-GLT1D1-1	lnc-GLT1D1-1:7	ENSG00000249196	RP11-669N7.2	TMEM132D	NA	chr12:129587610-129607838	inner
CUST_18657_PI429285431	2.5624418	A	2.0371742	A	1.43920050706667	0	lncRNA	20360-1_{1..394}	lnc-FAM75D1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FAM75D1-3:1	chr9	 85043114	 85043507	+	lnc-FAM75D1-3	lnc-FAM75D1-3:1	ENSG00000228430	RP11-15B24.5	NA	NA	NA	inter
LNCA_21_P0002810	0.9833781	A	0.92345786	A	1.04240812927772	0	lncRNA	XR_108518	XR_108518	XR_108518	NA	Hs.518427	LOC100505609	uncharacterized LOC100505609	ENST00000464537	THC2608756	NA	"PREDICTED: Homo sapiens hypothetical LOC100505609, transcript variant 1 (LOC100505609), miscRNA [XR_108518]"	chr3:180140107-180140166	hs|3q26.33	Agilent_HUMAN_G3V2	XR_108518	XR_108518	chr3	180140107	180140166	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008560	2.572337	A	2.729954	A	0.896504667889196	0	lncRNA	AK097902	NA	AK097902	NA	Hs.430824	XLOC_011295	NA	NA	THC2513213	NA	"BROAD Institute lincRNA (XLOC_011295), lincRNA [TCONS_00023235]"	chr15:69904774-69904833	hs|15q23	Agilent_HUMAN_G3V2	AK097902	AK097902	chr15	 69904774	 69904833	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14223_PI429285431	1.4116961	A	2.0010693	A	0.6646316032683	0	lncRNA	15880-1_{1..528}	lnc-RP11-17M16.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-17M16.1.1-3:1	chr18	 74322802	 74323329	+	lnc-RP11-17M16.1.1-3	lnc-RP11-17M16.1.1-3:1	XLOC_012727	linc-ZNF236-3	NA	NA	NA	inter
CUST_16365_PI429285431	0.9072775	A	0.8997141	A	1.00525631559364	0	lncRNA	18063-1_{1..581}	lnc-KLF7-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF7-1:3	chr2	208124771	208125351	-	lnc-KLF7-1	lnc-KLF7-1:3	XLOC_002473	linc-KLF7-2	NA	NA	NA	inter
CUST_9706_PI429285431	5.64154	P	5.266618	P	1.29676944229324	0	lncRNA	11222-1_{1..3000}	lnc-HOXA13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOXA13-1:1	chr7	 27232227	 27235226	-	lnc-HOXA13-1	lnc-HOXA13-1:1	XLOC_006390	linc-HOXA11	HOXA13	NA	chr7:27236499-27239725	inter
CUST_50409_PI429285431	3.9715903	P	3.7849848	P	1.1380827816973	0	lncRNA	54113-1_{1..882}	hg19_lincRNAsTranscripts_TCONS_l2_00030128 range=chrX:2536279-2556288 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030128 range=chrX:2536279-2556288 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	  2536279	  2537160	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26503_PI429285431	1.3379939	A	1.7916698	A	0.730180021116034	0	lncRNA	28011-1_{1..741}	lnc-STC1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STC1-2:3	chr8	 24244674	 24245414	-	lnc-STC1-2	lnc-STC1-2:3	ENSG00000253535.1	RP11-624C23.1	ADAMDEC1	NA	chr8:24241798-24255028	inner
CUST_31975_PI429285431	1.7350004	A	1.5964195	A	1.10082176514197	0	lncRNA	33698-1_{1..1329}	n338535|BC035345|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|936|NULL|-1.1557600|-0.1569114	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338535|BC035345|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|936|NULL|-1.1557600|-0.1569114	chr14	105147482	105148810	+	NA	NA	NA	NA	INF2	NA	chr14:105155943-105161269	inter
LNCA_21_P0002953	0.9619937	A	0.91982275	A	1.02966208448072	0	lncRNA	TCONS_00006002	NA	NA	NA	NA	XLOC_002629	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002629), lincRNA [TCONS_00006002]"	chr3:44059680-44059739	hs|3p21.33	Agilent_HUMAN_G3V2	TCONS_00006002	TCONS_00006002	chr3	 44059680	 44059739	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9168_PI429285431	3.7706144	P	4.589935	P	0.566708756683118	0	lncRNA	10685-2_{3001..3650}	lnc-KIAA1737-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1737-2:1	chr14	 77496912	 77497561	+	lnc-KIAA1737-2	lnc-KIAA1737-2:1	ENSG00000247239	ENST00000499817	IRF2BPL	"hg19_refFlat_IRF2BPL:range=chr14:77491745-774941355'pad=0,hg19_refFlat_IRF2BPL:range=chr14:77491745-774941355'pad=0 3'pad=0 strand=- repeatMasking=none,-111.80;hg19_refFlat_IRF2BP2:range=chr1:234742883-2347452405'pad=0,hg19_refFlat_IRF2BP2:range=chr1:234742883-2347452405'pad=0 3'pad=0 strand=- repeatMasking=none,-94.90chr14:77490886-77495034"	NA	inner
CUST_22909_PI429285431	0.92592573	A	0.9181148	A	1.00542880696328	0	lncRNA	24485-1_{1..592}	lnc-S1PR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-S1PR1-1:1	chr1	101708714	101709305	+	lnc-S1PR1-1	lnc-S1PR1-1:1	ENSG00000260940.1	RP4-575N6.5	S1PR1	NA	chr1:101702305-101707076	inter
CUST_4632_PI429285431	1.1738279	A	1.0896701	A	1.06006872591609	0	lncRNA	4578-1_{1..403}	"transcript_id ""ENST00000413402.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413402.1"" | genecode_v17"	chr13	 61259333	 61259735	+	ENSG00000225249.1	ENST00000413402.1	LINC00378	LINC00378-002	NA	NA	NA	inter
CUST_12740_PI429285431	2.7515805	A	3.6881104	P	0.522488105657009	0	lncRNA	14365-1_{1..388}	lnc-F13A1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-F13A1-4:1	chr6	  6759188	  6759575	-	lnc-F13A1-4	lnc-F13A1-4:1	XLOC_005596	linc-F13A1-2	NA	NA	NA	inter
CUST_6334_PI429285431	4.850826	P	4.7001987	P	1.11005203023398	0	lncRNA	6257-1_{1..442}	"transcript_id ""ENST00000585694.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585694.1"" | genecode_v17"	chr19	 11952056	 11952497	-	ENSG00000267089.1	ENST00000585694.1	CTC-499B15.8	CTC-499B15.8-001	ZNF440	NA	chr19:11942056-11946016	inter
CUST_50302_PI429285431	0.90133226	A	0.89706933	A	1.00295920774696	0	lncRNA	54020-1_{1..284}	hg19_lincRNAsTranscripts_TCONS_l2_00029499 range=chr9:99839964-99851287 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029499 range=chr9:99839964-99851287 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 99839964	 99840247	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21947_PI429285431	3.1256073	P	3.3515747	P	0.855021498250836	0	lncRNA	23555-1_{1..413}	lnc-ORC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ORC3-1:1	chr6	 88411168	 88411580	+	lnc-ORC3-1	lnc-ORC3-1:1	ENSG00000224345.1	AKIRIN2-AS1	AKIRIN2	"hg19_refFlat_AKIRIN2:range=chr6:88385315-884114025'pad=0,hg19_refFlat_AKIRIN2:range=chr6:88385315-884114025'pad=0 3'pad=0 strand=- repeatMasking=none,-97.80chr6:88401168-88411985"	NA	inner
CUST_15159_PI429285431	2.6233306	A	2.7998478	A	0.884836497614644	0	lncRNA	16821-1_{1..337}	lnc-TSHZ2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSHZ2-4:2	chr20	 52466270	 52466606	+	lnc-TSHZ2-4	lnc-TSHZ2-4:2	XLOC_013570	linc-PFDN4-3	NA	NA	NA	inter
CUST_28640_PI429285431	1.4093785	A	1.3444413	A	1.04603940507968	0	lncRNA	30331-1_{1..631}	n326018|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047520|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047520|-0.7499380|-0.1609668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326018|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047520|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047520|-0.7499380|-0.1609668	chr10	 34238171	 34238801	+	NA	NA	NA	NA	NA	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90"	NA	inter
CUST_12858_PI429285431	5.963597	P	6.1579943	P	0.873937915799987	0	lncRNA	14485-1_{1..988}	lnc-MAP1LC3B2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP1LC3B2-1:1	chr12	116988920	116989907	+	lnc-MAP1LC3B2-1	lnc-MAP1LC3B2-1:1	XLOC_009898	linc-MAP1LC3B2-1	MAP1LC3B2	NA	chr12:116997186-116998960	inter
CUST_34640_PI429285431	0.9246255	A	1.2444054	A	0.801192099490466	0	lncRNA	36094-1_{1..3000}	n341540|BX641068|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4010|NULL|-1.1365000|-0.3745857	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341540|BX641068|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4010|NULL|-1.1365000|-0.3745857	chr8	 79518186	 79521185	+	NA	NA	NA	NA	PKIA	NA	chr8:79508186-79517502	inter
CUST_36432_PI429285431	1.2241029	A	0.8988728	A	1.25286424597522	0	lncRNA	37645-1_{1..966}	n344944|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_493|NULL|-1.2572700|-0.4056164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344944|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_493|NULL|-1.2572700|-0.4056164	chr7	  8382796	  8383761	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14806_PI429285431	2.265379	A	1.47342	A	1.73142392494404	0	lncRNA	16467-1_{1..1783}	lnc-AC093726.6.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC093726.6.1-1:5	chr7	154796051	154797833	+	lnc-AC093726.6.1-1	lnc-AC093726.6.1-1:5	XLOC_006301	linc-HTR5A-1	PAXIP1	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.60;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30chr7:154786051-154794682"	NA	inter
CUST_26105_PI429285431	0.9159768	A	0.90672714	A	1.00643197261419	0	lncRNA	27617-1_{1..487}	lnc-UHRF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UHRF2-1:1	chr9	  6785601	  6786087	+	lnc-UHRF2-1	lnc-UHRF2-1:1	ENSG00000236563.1	RP11-390F4.7	KDM4C	NA	chr9:6775601-6795929	inner
CUST_51447_PI429285431	1.072566	A	1.2075295	A	0.91069287371374	0	lncRNA	55024-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00009664 range=chr16:31053323-31056802 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009664 range=chr16:31053323-31056802 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 31053323	 31056322	+	NA	NA	NA	NA	STX4	"hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50chr16:31044903-31051485"	NA	inter
CUST_31946_PI429285431	1.7220315	A	1.43552	A	1.21968745124934	0	lncRNA	33673-1_{1..2560}	n338503|AK123264|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|900|NULL|4.0090700|-0.3114791	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338503|AK123264|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|900|NULL|4.0090700|-0.3114791	chr1	207974866	207977425	-	NA	NA	NA	NA	CD46	NA	chr1:207964866-207968861	inter
CUST_1085_PI429285431	0.9281548	A	0.9160827	A	1.00840284948711	0	lncRNA	1074-1_{1..444}	"transcript_id ""ENST00000417715.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417715.1"" | genecode_v17"	chr2	140861152	140861595	-	ENSG00000224028.1	ENST00000417715.1	AC073928.2	AC073928.2-001	NA	NA	NA	inter
CUST_21109_PI429285431	1.3757689	A	0.9273616	A	1.36453301389184	0	lncRNA	22734-1_{1..2356}	lnc-AKAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AKAP1-1:1	chr17	 55060110	 55062465	+	lnc-AKAP1-1	lnc-AKAP1-1:1	ENSG00000263120.1	RP5-1107A17.4	SCPEP1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70chr17:55055468-55072465"	NA	inner
CUST_14232_PI429285431	0.9594482	A	0.99571764	A	0.97517331961325	0	lncRNA	15889-2_{3001..4931}	lnc-AL078585.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AL078585.1-2:1	chr6	163770411	163772341	-	lnc-AL078585.1-2	lnc-AL078585.1-2:1	XLOC_005909	linc-PARK2-6	NA	NA	NA	inter
CUST_28350_PI429285431	0.9199563	A	0.91305554	A	1.00479470030281	0	lncRNA	29999-1_{1..330}	n325659|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045430|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045430|-1.1719200|-0.5199579	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325659|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045430|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045430|-1.1719200|-0.5199579	chr13	 89001487	 89001816	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3585_PI429285431	1.6806697	A	0.90653265	A	1.71016680676776	0	lncRNA	3555-1_{1..320}	"transcript_id ""ENST00000437289.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437289.1"" | genecode_v17"	chr10	  2543995	  2544314	+	ENSG00000235281.1	ENST00000437289.1	RP11-526P5.2	RP11-526P5.2-001	NA	NA	NA	inter
CUST_1840_PI429285431	1.7559339	A	2.6345596	A	0.543885285436371	0	lncRNA	1830-1_{1..446}	"transcript_id ""ENST00000513690.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513690.1"" | genecode_v17"	chr4	111516671	111517116	-	ENSG00000250103.1	ENST00000513690.1	RP11-380D23.2	RP11-380D23.2-002	PITX2	NA	chr4:111538579-111546614	inter
CUST_43824_PI429285431	1.331423	A	1.6972879	A	0.776003519088883	0	lncRNA	48548-1_{1..1667}	"gi|255918245|ref|NR_028308.1| Homo sapiens BRE antisense RNA 1 (BRE-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|255918245|ref|NR_028308.1| Homo sapiens BRE antisense RNA 1 (BRE-AS1), non-coding RNA"	Chr2	 28112323	 28113989	-	100302650	NR_028308.1	NA	NA	NA	NA	NA	inter
CUST_46347_PI429285431	0.919405	A	0.9209727	A	0.998913943351914	0	lncRNA	50571-1_{1..1859}	"gi|224451046|ref|NR_027046.1| Homo sapiens uncharacterized LOC145474 (LOC145474), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224451046|ref|NR_027046.1| Homo sapiens uncharacterized LOC145474 (LOC145474), non-coding RNA"	Chr14	 71954578	 71956436	+	145474	NR_027046.1	NA	NA	NA	NA	NA	inter
CUST_19337_PI429285431	0.91283	A	1.0131385	A	0.932833496912795	0	lncRNA	21003-1_{1..2199}	lnc-RPE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RPE-1:1	chr2	210928508	210930706	+	lnc-RPE-1	lnc-RPE-1:1	ENSG00000229127.1	AC007038.7	C2orf67	"hg19_refFlat_KANSL1L:range=chr2:210887673-2110193065'pad=0,hg19_refFlat_KANSL1L:range=chr2:210887673-2110193065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30chr2:210918508-210939080"	NA	inner
CUST_18063_PI429285431	4.12427	P	3.7112148	P	1.33150255784561	0	lncRNA	19798-1_{1..863}	lnc-EFHA1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFHA1-2:2	chr13	 22450576	 22451438	-	lnc-EFHA1-2	lnc-EFHA1-2:2	XLOC_010530	linc-EFHA1-3	NA	NA	NA	inter
CUST_44817_PI429285431	0.91030276	A	0.90436274	A	1.00412579587344	0	lncRNA	49351-1_{1..1965}	"gi|388596719|ref|NR_049793.1| Homo sapiens uncharacterized LOC100130476 (LOC100130476), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|388596719|ref|NR_049793.1| Homo sapiens uncharacterized LOC100130476 (LOC100130476), non-coding RNA"	Chr6	138144806	138146770	-	100130476	NR_049793.1	NA	NA	NA	NA	NA	inter
CUST_23997_PI429285431	3.0653985	A	3.198906	A	0.911612429205596	0	lncRNA	25551-1_{1..403}	lnc-C1orf177-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf177-2:5	chr1	 55354173	 55354575	+	lnc-C1orf177-2	lnc-C1orf177-2:5	ENSG00000233203.2	RP11-67L3.4	DHCR24	NA	chr1:55344173-55352921	inter
CUST_34056_PI429285431	2.8007576	A	2.8329294	A	0.977947009956745	0	lncRNA	35586-1_{1..1654}	n340875|AL117559|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3340|NULL|-1.1450100|-0.3141599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340875|AL117559|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3340|NULL|-1.1450100|-0.3141599	chr6	 22221009	 22222662	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004571	0.9242591	A	0.916349	A	1.00549792191758	0	lncRNA	TCONS_00011020	NA	NA	NA	NA	XLOC_004958	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004958), lincRNA [TCONS_00011020]"	chr5:114522638-114522579	hs|5q22.3	Agilent_HUMAN_G3V2	TCONS_00011020	TCONS_00011020	chr5	114522579	114522638	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44032_PI429285431	3.8353932	P	3.1310263	A	1.62942946294738	0	lncRNA	48715-2_{3001..3726}	"gi|358030329|ref|NR_045563.1| Homo sapiens GULP, engulfment adaptor PTB domain containing 1 (GULP1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|358030329|ref|NR_045563.1| Homo sapiens GULP, engulfment adaptor PTB domain containing 1 (GULP1), transcript variant 5, non-coding RNA"	Chr2	189160390	189161115	+	51454	NR_045563.1	NA	NA	NA	NA	NA	inter
CUST_4252_PI429285431	5.413649	P	5.659667	P	0.843220589616945	0	lncRNA	4209-1_{1..665}	"transcript_id ""ENST00000547902.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547902.1"" | genecode_v17"	chr12	 50254990	 50255654	+	ENSG00000257253.1	ENST00000547902.1	RP11-70F11.7	RP11-70F11.7-001	FAIM2	NA	chr12:50256889-50269528	inter
CUST_5650_PI429285431	1.0304632	A	0.91251135	A	1.08519315291605	0	lncRNA	5578-1_{1..3000}	"transcript_id ""ENST00000568107.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000568107.1"" | genecode_v17"	chr16	 81416874	 81419873	+	ENSG00000261609.1	ENST00000568107.1	MIR4720	MIR4720-001	GAN	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr16:81406874-81413803"	NA	inter
CUST_41367_PI429285431	0.91432685	A	0.90327513	A	1.00768988501424	0	lncRNA	42448-1_{1..110}	ENST00000384858 ncrna:miRNA chromosome:GRCh37:1:220291195:220291304:-1 gene:ENSG00000207590 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384858 ncrna:miRNA chromosome:GRCh37:1:220291195:220291304:-1 gene:ENSG00000207590 gene_biotype:miRNA transcript_biotype:miRNA	chr1	220291195	220291304	-	ENSG00000207590	ENST00000384858	NA	NA	IARS2	NA	chr1:220281195-220301304	inter
CUST_17277_PI429285431	4.309511	P	4.492049	P	0.881151503619176	0	lncRNA	18995-1_{1..347}	lnc-C2orf63-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2orf63-1:1	chr2	 55397326	 55397672	-	lnc-C2orf63-1	lnc-C2orf63-1:1	XLOC_002098	linc-RTN4	C2orf63	NA	chr2:55399683-55407546	inter
LNCA_21_P0012129	3.012119	A	2.5829113	A	1.34649390556642	0	lncRNA	TCONS_l2_00016359	NA	NA	NA	NA	XLOC_l2_008692	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008692), lincRNA [TCONS_l2_00016359]"	chr20:58662291-58662350	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_l2_00016359	TCONS_l2_00016359	chr20	 58662291	 58662350	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_32_P47107	8.572551	P	8.709543	P	0.909413294644841	0	lncRNA	XR_108889	XR_108889	XR_108889	100129104	Hs.598335	LOC100129104	uncharacterized LOC100129104	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100129104 (LOC100129104), miscRNA [XR_108889]"	chr8:134585970-134586029	hs|8q24.22	Agilent_HUMAN_G3V2	XR_108889	XR_108889	chr8	134585970	134586029	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33866_PI429285431	3.0001934	A	2.6997163	A	1.23155162077056	0	lncRNA	35410-1_{1..1476}	n340654|AK056935|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3116|NULL|-1.3230700|-0.2711403	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340654|AK056935|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3116|NULL|-1.3230700|-0.2711403	chr17	 38753364	 38754839	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41775_PI429285431	6.4193335	P	6.4274216	P	0.994409441946957	0	lncRNA	43340-1_{1..75}	ENST00000459421 ncrna:miRNA chromosome:GRCh37:10:115933864:115933938:-1 gene:ENSG00000238742 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459421 ncrna:miRNA chromosome:GRCh37:10:115933864:115933938:-1 gene:ENSG00000238742 gene_biotype:miRNA transcript_biotype:miRNA	chr10	115933864	115933938	-	ENSG00000238742	ENST00000459421	NA	NA	TDRD1	NA	chr10:115939029-115943938	inner
CUST_42830_PI429285431	12.264497	P	12.164806	P	1.07154393202097	0	lncRNA	45858-1_{1..129}	ENST00000364578 ncrna:snoRNA chromosome:GRCh37:1:36884051:36884179:-1 gene:ENSG00000201448 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364578 ncrna:snoRNA chromosome:GRCh37:1:36884051:36884179:-1 gene:ENSG00000201448 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 36884051	 36884179	-	ENSG00000201448	ENST00000364578	NA	NA	OSCP1	NA	chr1:36883507-36894179	inner
CUST_26404_PI429285431	0.89923674	A	0.8989355	A	1.00020882545767	0	lncRNA	27911-1_{1..434}	lnc-C8orf22-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C8orf22-6:1	chr8	 51294466	 51294899	+	lnc-C8orf22-6	lnc-C8orf22-6:1	ENSG00000253849.1	RP11-759A9.1	SNTG1	NA	chr8:51284466-51304835	inner
CUST_11621_PI429285431	3.5588598	P	3.5231674	P	1.02504866183805	0	lncRNA	13200-2_{3001..4792}	lnc-RUNX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RUNX2-1:1	chr6	 45546599	 45548390	+	lnc-RUNX2-1	lnc-RUNX2-1:1	XLOC_005302	linc-ENPP4-2	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50"	NA	inter
CUST_760_PI429285431	5.8756394	P	6.3722873	P	0.708751653036674	0	lncRNA	751-1_{1..2183}	"transcript_id ""ENST00000412294.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412294.1"" | genecode_v17"	chr2	 12147254	 12149436	+	ENSG00000224184.1	ENST00000412294.1	AC096559.1	AC096559.1-001	NA	NA	NA	inter
CUST_47814_PI429285431	5.1062603	P	5.606543	P	0.706968235272635	0	lncRNA	51729-1_{1..1014}	"gi|310124327|ref|XR_110950.1| PREDICTED: Homo sapiens uncharacterized LOC100505874, transcript variant 3 (LOC100505874), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124327|ref|XR_110950.1| PREDICTED: Homo sapiens uncharacterized LOC100505874, transcript variant 3 (LOC100505874), misc_RNA"	NA	NA	NA	NA	NA	XR_110950.1	NA	NA	NA	NA	NA	Unknown
CUST_44866_PI429285431	0.92346126	A	0.9226371	A	1.00057142738279	0	lncRNA	49390-1_{1..1423}	"gi|310119899|ref|XR_108728.1| PREDICTED: Homo sapiens uncharacterized LOC401296 (LOC401296), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119899|ref|XR_108728.1| PREDICTED: Homo sapiens uncharacterized LOC401296 (LOC401296), misc_RNA"	Chr7	  1732446	  1733868	-	401296	XR_108728.1	NA	NA	NA	NA	NA	inter
CUST_41487_PI429285431	3.0025654	P	3.1820471	P	0.883020171536325	0	lncRNA	42693-1_{1..86}	ENST00000583345 ncrna:miRNA chromosome:GRCh37:10:99635569:99635654:-1 gene:ENSG00000265398 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583345 ncrna:miRNA chromosome:GRCh37:10:99635569:99635654:-1 gene:ENSG00000265398 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 99635569	 99635654	-	ENSG00000265398	ENST00000583345	NA	NA	GOLGA7B	NA	chr10:99625569-99627782	inner
CUST_46228_PI429285431	5.0632796	P	5.3011665	P	0.847986439878718	0	lncRNA	50468-1_{1..3000}	"gi|388890255|ref|NR_002816.2| Homo sapiens mitochondrial ribosomal protein S31 pseudogene 3 (MRPS31P3), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|388890255|ref|NR_002816.2| Homo sapiens mitochondrial ribosomal protein S31 pseudogene 3 (MRPS31P3), transcript variant 1, non-coding RNA"	Chr13	 52741844	 52744843	-	100887750	NR_002816.2	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30"	NA	inter
CUST_19818_PI429285431	1.8940848	A	1.3387243	A	1.469535794359	0	lncRNA	21475-1_{1..1606}	lnc-NBPF6-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NBPF6-1:3	chr1	108953126	108954731	+	lnc-NBPF6-1	lnc-NBPF6-1:3	ENSG00000243967.3	NBPF5	NA	NA	NA	inter
CUST_18183_PI429285431	8.929855	P	8.959528	P	0.979642317298012	0	lncRNA	19919-1_{1..1557}	lnc-AC005493.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC005493.1-1:4	chr7	 34873749	 34875305	-	lnc-AC005493.1-1	lnc-AC005493.1-1:4	ENSG00000197085	AC005688.1	NPSR1	NA	chr7:34863749-34883941	inter
CUST_33022_PI429285431	0.99945956	A	0.9804329	A	1.01327562461421	0	lncRNA	34637-1_{1..1027}	n339704|BC041442|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2149|NULL|-0.7005780|-0.2711646	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n339704|BC041442|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2149|NULL|-0.7005780|-0.2711646	chr3	180131961	180132987	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12232_PI429285431	1.0002259	A	1.1383162	A	0.908721236724501	0	lncRNA	13838-1_{1..2519}	lnc-MATN1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-MATN1-3:1	chr1	 30510345	 30512863	-	lnc-MATN1-3	lnc-MATN1-3:1	XLOC_000766	linc-MECR-2	NA	NA	NA	inter
CUST_22994_PI429285431	0.9068188	A	0.8973058	A	1.0066156968098	0	lncRNA	24568-1_{1..389}	lnc-CEP170-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CEP170-4:1	chr1	243904015	243904403	-	lnc-CEP170-4	lnc-CEP170-4:1	ENSG00000232184.1	RP11-370K11.1	AKT3	NA	chr1:243894015-243914123	inner
CUST_13643_PI429285431	0.9129072	A	0.9029048	A	1.00695722518227	0	lncRNA	15281-1_{1..679}	lnc-AP001496.1-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP001496.1-8:1	chr18	  5793586	  5794264	+	lnc-AP001496.1-8	lnc-AP001496.1-8:1	XLOC_012616	linc-ARHGAP28-4	NA	NA	NA	inter
CUST_15603_PI429285431	7.948546	P	8.164618	P	0.860906222366875	0	lncRNA	17289-1_{1..282}	lnc-C9orf38-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf38-2:1	chr9	  6411816	  6412097	-	lnc-C9orf38-2	lnc-C9orf38-2:1	XLOC_007638	linc-RANBP6-1	UHRF2	NA	chr9:6413151-6421865	inter
CUST_36910_PI429285431	5.5049276	P	5.6522408	P	0.902930468359407	0	lncRNA	38070-1_{1..535}	n345383|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_932|NULL|-1.7401800|-0.2008906	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345383|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_932|NULL|-1.7401800|-0.2008906	chr20	 17806254	 17806788	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2070_PI429285431	1.2711935	A	0.9205163	A	1.27515904558572	0	lncRNA	2061-1_{1..332}	"transcript_id ""ENST00000512746.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512746.1"" | genecode_v17"	chr5	  7326177	  7326508	+	ENSG00000251250.1	ENST00000512746.1	RP11-404K5.4	RP11-404K5.4-001	NA	NA	NA	inter
CUST_209_PI429201921	0.9152615	A	0.92024744	A	0.996549974807166	0	lncRNA	166-1_{1..3000}	TC0Y000273.hg.1	TCONS_l2_00031002-XLOC_l2_015904 // Broad TUCP // linc-BPY2B-1 chrY:+:24795437-24800925 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:+:24795437-24800925	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031002-XLOC_l2_015904	linc-BPY2B-1	chrY	 24795437	 24800925	+	NA	NA	NA	NA	PLA2G2C	NA	chr1:20490484-20497059	Unknown
CUST_21510_PI429285431	1.2573493	A	1.5508221	A	0.815935603924728	0	lncRNA	23128-1_{1..623}	lnc-DUOXA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DUOXA1-1:1	chr15	 45490715	 45491337	-	lnc-DUOXA1-1	lnc-DUOXA1-1:1	ENSG00000259932.1	CTD-2651B20.7	SHF	NA	chr15:45480715-45493373	inner
CUST_10015_PI429285431	0.9224758	A	0.91814196	A	1.00300850547325	0	lncRNA	11540-1_{1..746}	lnc-RP11-408E5.4.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-408E5.4.1-5:1	chr13	 19497681	 19498426	+	lnc-RP11-408E5.4.1-5	lnc-RP11-408E5.4.1-5:1	XLOC_010287	linc-MPHOSPH8-5	NA	NA	NA	inter
CUST_17094_PI429285431	1.143118	A	1.0666791	A	1.05441215018902	0	lncRNA	18802-1_{1..258}	lnc-SRRM4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRRM4-1:1	chr12	119658519	119658776	+	lnc-SRRM4-1	lnc-SRRM4-1:1	XLOC_009909	linc-CCDC60	NA	NA	NA	inter
CUST_42389_PI429285431	1.0134659	A	0.92878014	A	1.06045673328328	0	lncRNA	45083-1_{1..92}	ENST00000516035 ncrna:snoRNA chromosome:GRCh37:12:97945915:97946006:-1 gene:ENSG00000251844 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516035 ncrna:snoRNA chromosome:GRCh37:12:97945915:97946006:-1 gene:ENSG00000251844 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 97945915	 97946006	-	ENSG00000251844	ENST00000516035	NA	NA	NA	NA	NA	inter
CUST_10217_PI429285431	6.071785	P	5.919011	P	1.11170499388483	0	lncRNA	11742-1_{1..301}	lnc-SLC24A3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC24A3-2:1	chr20	 19031018	 19031318	+	lnc-SLC24A3-2	lnc-SLC24A3-2:1	XLOC_013474	linc-SLC24A3	NA	NA	NA	inter
CUST_31161_PI429285431	0.98344845	A	1.528377	A	0.685425347590513	0	lncRNA	32956-1_{1..216}	n337565|EF491807|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395534|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395534|-1.4387700|-0.3207423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337565|EF491807|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395534|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395534|-1.4387700|-0.3207423	chr1	 25252873	 25253088	-	NA	NA	NA	NA	RUNX3	NA	chr1:25242873-25264104	inner
CUST_30646_PI429285431	2.2225964	A	1.930687	A	1.22425950754853	0	lncRNA	32428-1_{1..416}	n336024|X81735|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323864|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323864|2.5982800|-0.2051738	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336024|X81735|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323864|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323864|2.5982800|-0.2051738	chr14	106330798	106331213	-	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106859077	inter
CUST_25256_PI429285431	3.598968	P	4.61173	P	0.495596532967441	0	lncRNA	26786-1_{1..609}	lnc-AGGF1-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGGF1-3:6	chr5	 76435086	 76435694	+	lnc-AGGF1-3	lnc-AGGF1-3:6	ENSG00000250802.2	CTC-564N23.3	NA	NA	NA	inter
CUST_41224_PI429285431	0.9141042	A	0.91609377	A	0.998621885636913	0	lncRNA	42121-1_{1..74}	ENST00000578951 ncrna:miRNA chromosome:GRCh37:4:148703746:148703819:1 gene:ENSG00000264274 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578951 ncrna:miRNA chromosome:GRCh37:4:148703746:148703819:1 gene:ENSG00000264274 gene_biotype:miRNA transcript_biotype:miRNA	chr4	148703746	148703819	+	ENSG00000264274	ENST00000578951	NA	NA	ARHGAP10	NA	chr4:148693746-148713819	inner
CUST_18689_PI429285431	0.9261863	A	0.92009115	A	1.004233773239	0	lncRNA	20388-1_{1..542}	lnc-INTS9-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-INTS9-1:6	chr8	 28557907	 28558448	-	lnc-INTS9-1	lnc-INTS9-1:6	ENSG00000246339	CTD-2172A10.1	EXTL3	NA	chr8:28559153-28568047	inter
CUST_7381_PI429285431	1.8261147	A	2.4435802	A	0.651815019053339	0	lncRNA	9027-1_{1..2061}	lnc-CHID1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CHID1-1:1	chr11	   859547	   861607	-	lnc-CHID1-1	lnc-CHID1-1:1	ENSG00000250397	ENSG00000250397.2	TSPAN4	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr11:849547-867116"	NA	inner
CUST_21949_PI429285431	5.664542	P	6.495318	P	0.562226749231279	0	lncRNA	23557-1_{1..480}	lnc-YIF1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YIF1A-1:1	chr11	 66044640	 66045119	-	lnc-YIF1A-1	lnc-YIF1A-1:1	ENSG00000254452.1	RP11-867G23.4	KLC2	NA	chr11:66034640-66035332	inner
CUST_40736_PI429285431	3.8403053	P	3.3435307	P	1.41105536942214	0	lncRNA	41468-3_{6001..7430}	n410439|NR_037573|lncRNA|Homosapiens||RefGeneNoncode|NR_037573||1.6927100|-0.3033670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410439|NR_037573|lncRNA|Homosapiens||RefGeneNoncode|NR_037573||1.6927100|-0.3033670	chr16	 23658686	 23660115	+	NA	NA	NA	NA	PLK1	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30chr16:23690201-23695068"	NA	inner
CUST_14402_PI429285431	1.0556118	A	0.91196835	A	1.10469143582138	0	lncRNA	16063-1_{1..268}	lnc-GABRA6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GABRA6-1:1	chr5	160509364	160509631	+	lnc-GABRA6-1	lnc-GABRA6-1:1	XLOC_004622	linc-GABRA6-2	NA	NA	NA	inter
CUST_47059_PI429285431	3.9327533	P	4.554817	P	0.649740842278069	0	lncRNA	51146-1_{1..621}	"gi|310123817|ref|XR_109571.1| PREDICTED: Homo sapiens uncharacterized LOC100507353, transcript variant 1 (LOC100507353), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310123817|ref|XR_109571.1| PREDICTED: Homo sapiens uncharacterized LOC100507353, transcript variant 1 (LOC100507353), misc_RNA"	Chr19	 13629789	 13630409	-	100507353	XR_109571.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0011145	1.011646	A	1.8921978	A	0.543159644580415	0	lncRNA	TCONS_l2_00006863	NA	NA	NA	NA	XLOC_l2_003737	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003737), lincRNA [TCONS_l2_00006863]"	chr13:53777324-53777383	hs|13q14.3	Agilent_HUMAN_G3V2	TCONS_l2_00006863	TCONS_l2_00006863	chr13	 53777324	 53777383	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9538_PI429285431	6.6990094	P	6.8547554	P	0.897668079644626	0	lncRNA	11050-1_{1..430}	lnc-EGLN1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EGLN1-1:6	chr1	231663868	231664297	-	lnc-EGLN1-1	lnc-EGLN1-1:6	XLOC_001257	linc-EGLN1-2	TSNAX	NA	chr1:231664399-231674042	inter
CUST_28417_PI429285431	1.3271435	A	0.92878073	A	1.31801132797562	0	lncRNA	30077-1_{1..240}	n325740|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044756|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044756|-1.2460300|-0.2664391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325740|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044756|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044756|-1.2460300|-0.2664391	chr13	 44518724	 44518963	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014700	6.7266293	P	6.947466	P	0.858067650411324	0	lncRNA	XR_111905	XR_111905	XR_111905	NA	Hs.664213	LOC100507769	uncharacterized LOC100507769	NA	THC2502013	NA	"PREDICTED: Homo sapiens hypothetical LOC100507769 (LOC100507769), miscRNA [XR_111905]"	chr19:58769274-58769215	hs|19q13.43	Agilent_HUMAN_G3V2	XR_111905	XR_111905	chr19	 58769215	 58769274	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39001_PI429285431	3.1307652	P	3.5920758	P	0.726326136098007	0	lncRNA	39982-1_{1..354}	n385298|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vzr.2||1.3634100|-0.2025281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385298|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vzr.2||1.3634100|-0.2025281	chr7	142344413	142344766	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6702_PI429285431	0.9447385	A	0.926089	A	1.01301076123447	0	lncRNA	6651-1_{1..2137}	"transcript_id ""ENST00000450586.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450586.1"" | genecode_v17"	chr20	 44797043	 44799179	-	ENSG00000229957.1	ENST00000450586.1	RP5-998H6.2	RP5-998H6.2-001	CDH22	NA	chr20:44802376-44809876	inter
CUST_28547_PI429285431	1.5257943	A	0.90545195	A	1.53723992340999	0	lncRNA	30219-1_{1..369}	n325896|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050219|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050219|-1.1468100|-0.3366495	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325896|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050219|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050219|-1.1468100|-0.3366495	chr10	106365849	106366217	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33244_PI429285431	0.92148894	A	1.7279348	A	0.571788749923193	0	lncRNA	34831-1_{1..629}	n339947|AF075092|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2396|NULL|-1.2617600|-0.2678834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339947|AF075092|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2396|NULL|-1.2617600|-0.2678834	chr10	  5388613	  5389241	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_32_P196142	8.191271	P	8.208058	P	0.98843157311138	0	lncRNA	XR_110148	XR_110148	XR_110148	100130938	NA	LOC100130938	uncharacterized LOC100130938	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100130938 (LOC100130938), miscRNA [XR_110148]"	chr18:59273374-59273315	hs|18q21.33	Agilent_HUMAN_G3V2	XR_110148	XR_110148	chr18	 59273315	 59273374	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15218_PI429285431	1.4015448	A	1.5905006	A	0.877240424428451	0	lncRNA	16889-1_{1..3000}	lnc-TNFRSF14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFRSF14-1:1	chr1	  2483442	  2486441	+	lnc-TNFRSF14-1	lnc-TNFRSF14-1:1	XLOC_000022	linc-TNFRSF14	TNFRSF14	NA	chr1:2487805-2495268	inter
CUST_15612_PI429285431	8.89715	P	8.83985	P	1.04051661337424	0	lncRNA	17299-1_{1..565}	lnc-C21orf67-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C21orf67-5:1	chr21	 46488820	 46489384	-	lnc-C21orf67-5	lnc-C21orf67-5:1	XLOC_014122	linc-ITGB2-4	ADARB1	NA	chr21:46494493-46498975	inter
CUST_872_PI429285431	2.240113	A	2.6012597	A	0.77854552087551	0	lncRNA	865-2_{3001..6000}	"transcript_id ""ENST00000418539.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000418539.1"" | genecode_v17"	chr2	 47561199	 47564198	+	ENSG00000236824.1	ENST00000418539.1	BCYRN1	BCYRN1-001	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.20;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.01;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-94.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50"	NA	inter
CUST_18569_PI429285431	1.7680454	A	3.348109	P	0.334467143668214	0	lncRNA	20278-1_{1..2026}	lnc-AC142381.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC142381.1-2:1	chr16	 32266212	 32268237	+	lnc-AC142381.1-2	lnc-AC142381.1-2:1	ENSG00000205456	AC133485.1	LOC729264	NA	chr16:32256212-32267243	inner
CUST_17348_PI429285431	0.91538733	A	1.3845372	A	0.722390151753212	0	lncRNA	19066-1_{1..471}	lnc-C1orf21-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf21-3:1	chr1	184748361	184748831	+	lnc-C1orf21-3	lnc-C1orf21-3:1	XLOC_000493	linc-RNF2-1	NA	NA	NA	inter
CUST_25155_PI429285431	1.4431852	A	0.928184	A	1.4289953283455	0	lncRNA	26693-1_{1..440}	lnc-C1orf177-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C1orf177-2:2	chr1	 55354173	 55354612	+	lnc-C1orf177-2	lnc-C1orf177-2:2	ENSG00000233203.2	RP11-67L3.4	DHCR24	NA	chr1:55344173-55352921	inter
CUST_13766_PI429285431	1.0279	A	1.204689	A	0.884669812417837	0	lncRNA	15409-1_{1..339}	lnc-PPP4R1-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP4R1-9:1	chr18	  8563150	  8563488	-	lnc-PPP4R1-9	lnc-PPP4R1-9:1	XLOC_012750	linc-LAMA1-2	NA	NA	NA	inter
CUST_18463_PI429285431	7.803705	P	7.597308	P	1.15380306424924	0	lncRNA	20185-1_{1..3000}	lnc-RNF112-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RNF112-1:1	chr17	 19319018	 19322017	+	lnc-RNF112-1	lnc-RNF112-1:1	ENSG00000128482	RNF112	RNF112	NA	chr17:19314491-19320589	inner
CUST_51942_PI429285431	1.1178535	A	1.2398064	A	0.918942883931046	0	lncRNA	55484-1_{1..1079}	hg19_lincRNAsTranscripts_TCONS_l2_00016522 range=chr20:23899188-23909544 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016522 range=chr20:23899188-23909544 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	 23899188	 23900266	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36980_PI429285431	7.4673815	P	7.437428	P	1.02097921764459	0	lncRNA	38126-1_{1..897}	n345442|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_991|NULL|-1.3511100|-0.2854053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345442|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_991|NULL|-1.3511100|-0.2854053	chr1	 59095598	 59096494	+	NA	NA	NA	NA	NA	"hg19_refFlat_AK2:range=chr1:33476430-335024295'pad=0,hg19_refFlat_AK2:range=chr1:33476430-335024295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_AK2:range=chr1:33478782-335024295'pad=0,hg19_refFlat_AK2:range=chr1:33478782-335024295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70"	NA	inter
CUST_29553_PI429285431	0.9165244	A	1.409564	A	0.710526518344677	0	lncRNA	31313-1_{1..1188}	n333033|AF180951|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072807|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072807|4.7364600|-0.1839000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333033|AF180951|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072807|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072807|4.7364600|-0.1839000	chr16	   816053	   817240	+	NA	NA	NA	NA	MSLNL	NA	chr16:819428-828865	inner
CUST_2144_PI429285431	1.415689	A	0.9229166	A	1.40714636598329	0	lncRNA	2135-1_{1..562}	"transcript_id ""ENST00000507027.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507027.1"" | genecode_v17"	chr5	 40052393	 40052954	+	ENSG00000250048.1	ENST00000507027.1	LINC00603	LINC00603-001	NA	NA	NA	inter
CUST_32073_PI429285431	0.9195458	A	0.9091188	A	1.00725362667299	0	lncRNA	33781-1_{1..753}	n338634|U50538|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1047|NULL|-1.2125200|-0.5018403	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338634|U50538|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1047|NULL|-1.2125200|-0.5018403	chr13	 32632894	 32633646	+	NA	NA	NA	NA	FRY	NA	chr13:32622894-32643647	inner
CUST_23298_PI429285431	3.1202106	P	3.7693324	P	0.637668358207275	0	lncRNA	24869-1_{1..1850}	lnc-GPS2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPS2-2:1	chr17	  7230030	  7231879	-	lnc-GPS2-2	lnc-GPS2-2:1	ENSG00000261915.1	RP11-542C16.2	ACAP1	NA	chr17:7239848-7240158	inner
CUST_14955_PI429285431	0.91204524	A	0.9053329	A	1.00466347987887	0	lncRNA	16619-1_{1..515}	lnc-CISD2-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CISD2-3:4	chr4	104374757	104375271	+	lnc-CISD2-3	lnc-CISD2-3:4	XLOC_003629	linc-TET2-5	NA	NA	NA	inter
CUST_39043_PI429285431	1.5862437	A	1.1531155	A	1.35015795681105	0	lncRNA	40022-2_{3001..5753}	n385466|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003yti.2||-0.9326390|-0.3214306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385466|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003yti.2||-0.9326390|-0.3214306	chr8	133136105	133138857	-	NA	NA	NA	NA	KCNQ3	NA	chr8:133133105-133148858	inner
CUST_359_PI429285431	15.42942	P	15.613565	P	0.880170546396237	0	lncRNA	351-1_{1..767}	"transcript_id ""ENST00000433505.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433505.1"" | genecode_v17"	chr1	113362792	113363558	-	ENSG00000215866.3	ENST00000433505.1	RP11-426L16.8	RP11-426L16.8-002	NA	NA	NA	inter
CUST_44693_PI429285431	3.0908384	A	3.005113	A	1.06122119877575	0	lncRNA	49251-1_{1..3000}	"gi|254281233|ref|NR_028077.1| Homo sapiens zinc finger and SCAN domain containing 12 (ZSCAN12), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254281233|ref|NR_028077.1| Homo sapiens zinc finger and SCAN domain containing 12 (ZSCAN12), transcript variant 2, non-coding RNA"	Chr6	 28346598	 28349597	-	9753	NR_028077.1	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10"	NA	inter
CUST_31241_PI429285431	5.751828	P	6.014923	P	0.83329833350546	0	lncRNA	33030-1_{1..398}	n337690|AF147307|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|72|NULL|-0.9506400|-0.1014387	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337690|AF147307|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|72|NULL|-0.9506400|-0.1014387	chrX	 49021913	 49022310	-	NA	NA	NA	NA	MAGIX	NA	chrX:49019181-49023836	inner
LNCA_21_P0002065	1.5339448	A	3.2966182	P	0.294701559491832	0	lncRNA	ENST00000418001	NA	NA	NA	NA	XLOC_002170	NA	ENST00000418001	NA	NA	"BROAD Institute lincRNA (XLOC_002170), lincRNA [TCONS_00003323]"	chr2:75147041-75146982	hs|2p12	Agilent_HUMAN_G3V2	ENST00000418001	ENST00000418001	chr2	 75146982	 75147041	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41345_PI429285431	1.1201432	A	0.8997301	A	1.16506714298854	0	lncRNA	42414-1_{1..89}	ENST00000583286 ncrna:miRNA chromosome:GRCh37:3:159000435:159000523:1 gene:ENSG00000263634 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583286 ncrna:miRNA chromosome:GRCh37:3:159000435:159000523:1 gene:ENSG00000263634 gene_biotype:miRNA transcript_biotype:miRNA	chr3	159000435	159000523	+	ENSG00000263634	ENST00000583286	NA	NA	SCHIP1	NA	chr3:158991036-159010523	inner
CUST_48908_PI429285431	5.112832	P	5.3632326	P	0.840662951957909	0	lncRNA	52750-1_{1..725}	hg19_lincRNAsTranscripts_TCONS_l2_00019489 range=chr3:125605437-125634748 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019489 range=chr3:125605437-125634748 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	125605437	125606161	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003038	3.106104	P	3.4463859	P	0.789886954301941	0	lncRNA	TCONS_00006254	NA	NA	NA	NA	XLOC_002851	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002851), lincRNA [TCONS_00006254]"	chr3:143755670-143755729	hs|3q24	Agilent_HUMAN_G3V2	TCONS_00006254	TCONS_00006254	chr3	143755670	143755729	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18559_PI429285431	1.1370275	A	0.9170107	A	1.16474714972169	0	lncRNA	20270-1_{1..1142}	lnc-GPHN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPHN-1:1	chr14	 66965071	 66966212	+	lnc-GPHN-1	lnc-GPHN-1:1	ENSG00000196553	NCRNA00238	GPHN	NA	chr14:66974125-66975270	inter
CUST_47787_PI429285431	1.8303334	A	1.5867258	A	1.18394954449023	0	lncRNA	51709-1_{1..1508}	"gi|221136825|ref|NR_001544.2| Homo sapiens non-protein coding RNA 185 (NCRNA00185), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|221136825|ref|NR_001544.2| Homo sapiens non-protein coding RNA 185 (NCRNA00185), non-coding RNA"	ChrY	 21034387	 21035894	-	55410	NR_001544.2	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-17.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80"	NA	inter
CUST_5263_PI429285431	1.0387392	A	1.0515854	A	0.991135218629394	0	lncRNA	5203-1_{1..467}	"transcript_id ""ENST00000558578.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558578.1"" | genecode_v17"	chr15	 80631549	 80632015	-	ENSG00000259361.1	ENST00000558578.1	RP11-210M15.3	RP11-210M15.3-001	NA	NA	NA	inter
CUST_31707_PI429285431	1.9195987	A	4.1210146	P	0.217424150126793	0	lncRNA	33450-1_{1..619}	n338236|AF086289|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|628|NULL|-0.5396370|-0.1304837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338236|AF086289|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|628|NULL|-0.5396370|-0.1304837	chr1	152658598	152659216	+	NA	NA	NA	NA	LCE2B	NA	chr1:152658599-152659877	inner
CUST_3551_PI429285431	4.561925	P	4.871517	P	0.806869913038157	0	lncRNA	3521-1_{1..459}	"transcript_id ""ENST00000454408.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454408.1"" | genecode_v17"	chr9	132208911	132209369	-	ENSG00000230676.1	ENST00000454408.1	RP11-65J3.3	RP11-65J3.3-001	NA	NA	NA	inter
CUST_30910_PI429285431	6.0395064	P	5.985058	P	1.03846198184645	0	lncRNA	32698-1_{1..811}	n336952|BC103744|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000337336|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000337336|-0.9884640|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336952|BC103744|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000337336|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000337336|-0.9884640|-1.0000000	chr17	  7255208	  7256018	+	NA	NA	NA	NA	ACAP1	NA	chr17:7245208-7254793	inner
CUST_23679_PI429285431	0.9271884	A	0.923254	A	1.00273084023686	0	lncRNA	25244-1_{1..831}	lnc-PMFBP1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PMFBP1-4:1	chr16	 72698791	 72699621	-	lnc-PMFBP1-4	lnc-PMFBP1-4:1	ENSG00000261008.2	AC004158.2	NA	NA	NA	inter
CUST_15237_PI429285431	0.98045623	A	0.9242796	A	1.03970671928682	0	lncRNA	16908-1_{1..588}	lnc-AC136604.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC136604.1-1:2	chr5	179089976	179090563	+	lnc-AC136604.1-1	lnc-AC136604.1-1:2	XLOC_004677	linc-CANX-1	CBY3	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40chr5:179079976-179100159"	NA	inter
CUST_14530_PI429285431	0.90853506	A	1.3046372	A	0.75990862624503	0	lncRNA	16198-1_{1..403}	lnc-RAB40B-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB40B-1:4	chr17	 80662905	 80663307	-	lnc-RAB40B-1	lnc-RAB40B-1:4	XLOC_012596	linc-RAB40B	RAB40B	NA	chr17:80652905-80656598	inter
CUST_21924_PI429285431	6.827221	P	8.288274	P	0.363227918316138	0	lncRNA	23532-2_{3001..4083}	lnc-GNRH1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNRH1-2:1	chr8	 24815986	 24817068	-	lnc-GNRH1-2	lnc-GNRH1-2:1	ENSG00000104725.9	NEFL	NEFL	NA	chr8:24808468-24814131	inner
CUST_7638_PI429285431	1.0615504	A	1.1703012	A	0.927390722912845	0	lncRNA	9269-2_{3001..4229}	lnc-NFYB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NFYB-2:1	chr12	104862855	104864083	-	lnc-NFYB-2	lnc-NFYB-2:1	ENSG00000245335	AC079316.1	CHST11	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10chr12:104850692-104872733"	NA	inner
CUST_2766_PI429285431	0.912768	A	0.90355754	A	1.00640462685072	0	lncRNA	2749-1_{1..842}	"transcript_id ""ENST00000456809.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456809.1"" | genecode_v17"	chr7	 13378826	 13379667	-	ENSG00000237713.1	ENST00000456809.1	AC006000.5	AC006000.5-001	NA	NA	NA	inter
CUST_49138_PI429285431	3.746731	A	3.7621417	A	0.98937496546231	0	lncRNA	52965-1_{1..298}	hg19_lincRNAsTranscripts_TCONS_l2_00020665 range=chr4:105475208-105488707 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020665 range=chr4:105475208-105488707 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	105475208	105475505	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18302_PI429285431	9.643457	P	9.649929	P	0.995523998733405	0	lncRNA	20032-1_{1..546}	lnc-INSC-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-INSC-3:1	chr11	 15939848	 15940393	+	lnc-INSC-3	lnc-INSC-3:1	ENSG00000254661	RP11-222N13.1	NA	NA	NA	inter
LNCA_19_P00322121	4.801323	P	4.942701	P	0.906652746055614	0	lncRNA	BC038559	NA	BC038559	NA	NA	LOC100506190	uncharacterized LOC100506190	NA	THC2561617	NA	"BROAD Institute lincRNA (XLOC_l2_015037), lincRNA [TCONS_l2_00029862]"	chr9:132245757-132245816	hs|9q34.11	Agilent_HUMAN_G3V2	BC038559	BC038559	chr9	132245757	132245816	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33012_PI429285431	1.2237382	A	0.9087461	A	1.24400484128008	0	lncRNA	34627-1_{1..360}	n339694|AJ607399|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2139|NULL|-0.9454320|-0.3399219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n339694|AJ607399|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2139|NULL|-0.9454320|-0.3399219	chr3	174156362	174156721	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14149_PI429285431	1.0521832	A	1.0280074	A	1.01689858019792	0	lncRNA	15800-1_{1..795}	lnc-FOXA2-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXA2-2:6	chr20	 22541408	 22542202	-	lnc-FOXA2-2	lnc-FOXA2-2:6	XLOC_013684	linc-NKX2-2-6	NA	NA	NA	inter
CUST_27160_PI429285431	0.9141323	A	0.90597117	A	1.00567289451902	0	lncRNA	28696-1_{1..1330}	n324284|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043250|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043250|-1.0658300|-0.1944258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324284|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043250|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043250|-1.0658300|-0.1944258	chr6	170405346	170406675	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47915_PI429285431	12.41242	P	12.684857	P	0.827919842026264	0	lncRNA	51806-1_{1..1537}	"gi|410172048|ref|XR_171563.1| PREDICTED: Homo sapiens uncharacterized LOC100996357, transcript variant 1 (LOC100996357), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172048|ref|XR_171563.1| PREDICTED: Homo sapiens uncharacterized LOC100996357, transcript variant 1 (LOC100996357), misc_RNA"	NA	NA	NA	NA	NA	XR_171563.1	NA	NA	NA	"hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40"	NA	Unknown
CUST_42827_PI429285431	0.9014685	A	0.8975867	A	1.00269428179644	0	lncRNA	45844-1_{1..130}	ENST00000516968 ncrna:snoRNA chromosome:GRCh37:1:29016177:29016306:1 gene:ENSG00000252777 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516968 ncrna:snoRNA chromosome:GRCh37:1:29016177:29016306:1 gene:ENSG00000252777 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 29016177	 29016306	+	ENSG00000252777	ENST00000516968	NA	NA	GMEB1	NA	chr1:29006177-29026306	inner
CUST_50237_PI429285431	0.89834154	A	0.9036802	A	0.99630636120089	0	lncRNA	53961-1_{1..1072}	hg19_lincRNAsTranscripts_TCONS_l2_00029335 range=chr9:67330657-67335397 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029335 range=chr9:67330657-67335397 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 67330657	 67331728	-	NA	NA	NA	NA	NA	"hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.82;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30"	NA	inter
CUST_8344_PI429285431	4.6582437	P	4.2411237	P	1.33525936242851	0	lncRNA	9924-2_{3001..3884}	lnc-SLC25A16-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A16-3:1	chr10	 70553128	 70554011	-	lnc-SLC25A16-3	lnc-SLC25A16-3:1	ENSG00000247499	ENST00000501160	CCAR1	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CCAR1:range=chr10:70482262-705510235'pad=0,hg19_refFlat_CCAR1:range=chr10:70482262-705510235'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60chr10:70540128-70551309"	NA	inner
CUST_6456_PI429285431	0.9291296	A	1.0716329	A	0.905945833984491	0	lncRNA	6397-1_{1..491}	"transcript_id ""ENST00000589110.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589110.1"" | genecode_v17"	chr19	 32539528	 32540018	+	ENSG00000267779.1	ENST00000589110.1	CTC-360P9.3	CTC-360P9.3-005	NA	NA	NA	inter
CUST_16562_PI429285431	0.99483514	A	1.6025385	A	0.656240546442637	0	lncRNA	18263-1_{1..563}	lnc-EXOC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXOC4-1:1	chr7	133759317	133759879	+	lnc-EXOC4-1	lnc-EXOC4-1:1	XLOC_006258	linc-LRGUK-2	EXOC4	NA	chr7:133749317-133750514	inter
LNCA_21_P0011432	0.92489034	A	1.3568661	A	0.741245959128121	0	lncRNA	TCONS_l2_00009686	NA	NA	NA	NA	XLOC_l2_005187	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005187), lincRNA [TCONS_l2_00009686]"	chr16:32773303-32773362	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00009686	TCONS_l2_00009686	chr16	 32773303	 32773362	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23664_PI429285431	9.356841	P	9.739224	P	0.767169356395227	0	lncRNA	25229-1_{1..2212}	lnc-SDIM1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SDIM1-3:1	chr6	166401017	166403228	-	lnc-SDIM1-3	lnc-SDIM1-3:1	ENSG00000223414.2	LINC00473	NA	NA	NA	inter
CUST_18025_PI429285431	0.92432487	A	1.5359333	A	0.654466644107614	0	lncRNA	19759-1_{1..417}	lnc-MSH6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MSH6-2:2	chr2	 48134457	 48134873	+	lnc-MSH6-2	lnc-MSH6-2:2	XLOC_001464	linc-FOXN2-2	FBXO11	NA	chr2:48124457-48132932	inter
CUST_6402_PI429285431	2.663575	A	3.5690246	P	0.533866304550454	0	lncRNA	6338-1_{1..610}	"transcript_id ""ENST00000602077.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602077.1"" | genecode_v17"	chr19	 23585164	 23585773	-	ENSG00000269416.1	ENST00000602077.1	CTB-175P5.4	CTB-175P5.4-007	ZNF91	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70chr19:23575164-23578269"	NA	inter
CUST_49913_PI429285431	4.991312	P	4.8581915	P	1.09666318271635	0	lncRNA	53662-1_{1..376}	hg19_lincRNAsTranscripts_TCONS_l2_00026768 range=chr7:97566296-97601645 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026768 range=chr7:97566296-97601645 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 97566296	 97566671	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41358_PI429285431	2.46246	A	2.3534503	A	1.07848768291183	0	lncRNA	42431-1_{1..70}	ENST00000388006 ncrna:miRNA chromosome:GRCh37:17:46709852:46709921:-1 gene:ENSG00000210741 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000388006 ncrna:miRNA chromosome:GRCh37:17:46709852:46709921:-1 gene:ENSG00000210741 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 46709852	 46709921	-	ENSG00000210741	ENST00000388006	NA	NA	HOXB9	NA	chr17:46699852-46703835	inter
CUST_51073_PI429285431	0.905331	A	0.89657235	A	1.00608949962769	0	lncRNA	54711-1_{1..904}	hg19_lincRNAsTranscripts_TCONS_l2_00006809 range=chr13:42535750-42545428 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006809 range=chr13:42535750-42545428 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 42535750	 42536653	+	NA	NA	NA	NA	KIAA0564	NA	chr13:42525750-42535221	inter
CUST_28617_PI429285431	2.0824313	A	2.3479488	A	0.831900275506999	0	lncRNA	30301-1_{1..709}	n325985|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047821|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047821|-1.4116900|-0.3568415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325985|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047821|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047821|-1.4116900|-0.3568415	chr10	 46218375	 46219083	-	NA	NA	NA	NA	FAM21C	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80chr10:46222648-46239027"	NA	inner
CUST_48986_PI429285431	6.106282	P	6.6107593	P	0.704915727940079	0	lncRNA	52821-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00019098 range=chr3:195722896-195731930 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019098 range=chr3:195722896-195731930 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	195725896	195728895	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2940_PI429285431	1.3907982	A	2.037022	A	0.63895055585268	0	lncRNA	2921-1_{1..485}	"transcript_id ""ENST00000454735.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454735.1"" | genecode_v17"	chr7	136112143	136112627	+	ENSG00000232053.2	ENST00000454735.1	AC009784.3	AC009784.3-004	NA	NA	NA	inter
CUST_6033_PI429285431	1.1249937	A	0.92384475	A	1.14961353292072	0	lncRNA	5959-1_{1..776}	"transcript_id ""ENST00000580781.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580781.1"" | genecode_v17"	chr18	   976591	   977366	+	ENSG00000263551.1	ENST00000580781.1	RP11-78F17.1	RP11-78F17.1-002	NA	NA	NA	inter
CUST_35470_PI429285431	10.64525	P	10.585306	P	1.04242529702309	0	lncRNA	36875-1_{1..1189}	n342556|D82057|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5055|NULL|3.9066400|-0.0796491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342556|D82057|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5055|NULL|3.9066400|-0.0796491	chr20	 35169918	 35171106	+	NA	NA	NA	NA	MYL9	NA	chr20:35169897-35178226	inner
CUST_19324_PI429285431	1.9249973	A	1.4865361	A	1.35515812449169	0	lncRNA	20990-1_{1..937}	lnc-RP11-429E11.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-429E11.3.1-1:1	chr20	 60330048	 60330984	-	lnc-RP11-429E11.3.1-1	lnc-RP11-429E11.3.1-1:1	ENSG00000225106.1	RP11-429E11.2	CDH4	NA	chr20:60320048-60340112	inner
CUST_29104_PI429285431	0.8987715	A	0.90122855	A	0.998298352167211	0	lncRNA	30837-1_{1..395}	n326602|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023039|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023039|-1.2832600|-0.3585046	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326602|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023039|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023039|-1.2832600|-0.3585046	chr1	 59076707	 59077101	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50969_PI429285431	5.2365613	P	5.325154	P	0.940439668876937	0	lncRNA	54610-1_{1..618}	hg19_lincRNAsTranscripts_TCONS_l2_00005790 range=chr12:80712350-80722521 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005790 range=chr12:80712350-80722521 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 80712350	 80712967	+	NA	NA	NA	NA	OTOGL	NA	chr12:80702350-80732521	inner
CUST_8427_PI429285431	1.2210726	A	2.118031	A	0.537017720451276	0	lncRNA	9997-2_{3001..4232}	lnc-PSCA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PSCA-1:1	chr8	143746944	143748175	+	lnc-PSCA-1	lnc-PSCA-1:1	ENSG00000247396	ENST00000501891	PSCA	"hg19_refFlat_JRK:range=chr8:143745769-1437474775'pad=0,hg19_refFlat_JRK:range=chr8:143745769-1437474775'pad=0 3'pad=0 strand=- repeatMasking=none,-105.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_JRK:range=chr8:143740267-1437474775'pad=0,hg19_refFlat_JRK:range=chr8:143740267-1437474775'pad=0 3'pad=0 strand=- repeatMasking=none,-105.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10chr8:143751726-143757183"	NA	inner
CUST_18377_PI429285431	2.9384017	A	3.2848687	P	0.786507811774452	0	lncRNA	20105-1_{1..485}	lnc-ITGB3BP-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-ITGB3BP-2:5	chr1	 63625832	 63626316	-	lnc-ITGB3BP-2	lnc-ITGB3BP-2:5	ENSG00000224209	RP11-335E6.1	NA	NA	NA	inter
CUST_40917_PI429285431	0.9171004	A	0.9181963	A	0.999240668443054	0	lncRNA	41603-1_{1..1687}	n410765|NR_038219|lncRNA|Homosapiens||RefGeneNoncode|NR_038219||-0.9121780|-0.2210903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410765|NR_038219|lncRNA|Homosapiens||RefGeneNoncode|NR_038219||-0.9121780|-0.2210903	chr6	134759527	134761213	+	NA	NA	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60"	NA	inter
CUST_29556_PI429285431	1.4128329	A	1.1148885	A	1.22939148684368	0	lncRNA	31316-1_{1..542}	n333040|AF195656|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000073652|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000073652|2.7953600|-0.2672327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333040|AF195656|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000073652|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000073652|2.7953600|-0.2672327	chr6	155569225	155569766	+	NA	NA	NA	NA	TIAM2	NA	chr6:155559225-155578857	inner
CUST_2277_PI429285431	1.7900068	A	0.9150785	A	1.83391694094306	0	lncRNA	2269-1_{1..325}	"transcript_id ""ENST00000506058.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506058.1"" | genecode_v17"	chr5	101479781	101480105	+	ENSG00000248261.1	ENST00000506058.1	CTD-2333K2.1	CTD-2333K2.1-001	NA	NA	NA	inter
CUST_50594_PI429285431	6.252231	P	6.1915045	P	1.04299084901017	0	lncRNA	54283-2_{3001..3555}	hg19_lincRNAsTranscripts_TCONS_l2_00003636 range=chr10:81451162-81588572 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003636 range=chr10:81451162-81588572 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 81454162	 81454716	-	NA	NA	NA	NA	NA	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90"	NA	inter
CUST_39961_PI429285431	11.719621	P	11.778587	P	0.959951883962352	0	lncRNA	40832-1_{1..2356}	n407017|NR_024517|lncRNA|Homosapiens||RefGeneNoncode|NR_024517||13.2950000|-0.1686313	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407017|NR_024517|lncRNA|Homosapiens||RefGeneNoncode|NR_024517||13.2950000|-0.1686313	chr6	 33286334	 33288689	-	NA	NA	NA	NA	TAPBP	NA	chr6:33276334-33282164	inner
CUST_21859_PI429285431	0.9143246	A	0.9173125	A	0.99793108869271	0	lncRNA	23469-1_{1..497}	lnc-KIN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIN-1:1	chr10	  7758640	  7759136	-	lnc-KIN-1	lnc-KIN-1:1	ENSG00000227546.1	ITIH2-AS1	ITIH2	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60chr10:7748640-7768692"	NA	inner
CUST_44853_PI429285431	0.90892005	A	1.1154666	A	0.866609195445578	0	lncRNA	49380-1_{1..3000}	"gi|310119878|ref|XR_110199.1| PREDICTED: Homo sapiens uncharacterized LOC401286 (LOC401286), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|310119878|ref|XR_110199.1| PREDICTED: Homo sapiens uncharacterized LOC401286 (LOC401286), misc_RNA"	Chr6	168067520	168070519	-	401286	XR_110199.2	NA	NA	NA	NA	NA	inter
CUST_36103_PI429285431	0.90611434	A	0.9052562	A	1.00059499426043	0	lncRNA	37397-1_{1..409}	n344682|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_231|NULL|-1.5484500|-0.2772675	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344682|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_231|NULL|-1.5484500|-0.2772675	chr13	 30229206	 30229614	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21578_PI429285431	0.9177687	A	0.92710984	A	0.993546131398147	0	lncRNA	23192-1_{1..638}	lnc-MOCS1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MOCS1-1:3	chr6	 39864973	 39865610	-	lnc-MOCS1-1	lnc-MOCS1-1:3	ENSG00000235033.2	RP11-61I13.3	DAAM2	"hg19_refFlat_DAAM2:range=chr6:39824079-398698135'pad=0,hg19_refFlat_DAAM2:range=chr6:39824079-398698135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20chr6:39854973-39872653"	NA	inner
LNCA_21_P0011883	2.964414	A	2.9588673	A	1.00385207972735	0	lncRNA	TCONS_l2_00014321	NA	NA	NA	NA	XLOC_l2_007827	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007827), lincRNA [TCONS_l2_00014321]"	chr2:241845995-241858188	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_l2_00014321	TCONS_l2_00014321	chr2	241845995	241858188	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51634_PI429285431	3.122459	A	3.2831259	A	0.894611432380332	0	lncRNA	55204-1_{1..1741}	hg19_lincRNAsTranscripts_TCONS_l2_00010791 range=chr17:42012450-42016280 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010791 range=chr17:42012450-42016280 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 42012450	 42014190	+	NA	NA	NA	NA	PPY	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40chr17:42018172-42019833"	NA	inter
CUST_33830_PI429285431	0.9251236	A	1.298333	A	0.772063063850294	0	lncRNA	35378-1_{1..507}	n340616|BC033341|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3078|NULL|-1.0139800|-0.2798060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340616|BC033341|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3078|NULL|-1.0139800|-0.2798060	chr5	132025273	132025779	+	NA	NA	NA	NA	KIF3A	NA	chr5:132028323-132067275	inner
CUST_21661_PI429285431	4.557863	P	4.9949036	P	0.738648244625692	0	lncRNA	23271-1_{1..449}	lnc-SEC14L1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC14L1-1:9	chr17	 75095100	 75095548	+	lnc-SEC14L1-1	lnc-SEC14L1-1:9	ENSG00000234912.3	LINC00338	SEC14L1	NA	chr17:75085100-75105256	inner
LNCA_21_P0011203	0.9757935	A	0.9785137	A	0.998116277475941	0	lncRNA	ENST00000415120	NA	NA	NA	NA	XLOC_l2_003764	NA	ENST00000415120	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003764), lincRNA [TCONS_l2_00007421]"	chr13:67949017-67949076	hs|13q21.32	Agilent_HUMAN_G3V2	ENST00000415120	ENST00000415120	chr13	 67949017	 67949076	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9381_PI429285431	1.3282319	A	0.96702176	A	1.28450289342025	0	lncRNA	10884-1_{1..455}	lnc-GDAP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GDAP2-1:1	chr1	118148268	118148722	-	lnc-GDAP2-1	lnc-GDAP2-1:1	XLOC_000980	linc-VTCN1-2	FAM46C	NA	chr1:118148604-118158443	inter
CUST_24525_PI429285431	11.209457	P	10.99472	P	1.16049234000524	0	lncRNA	26076-1_{1..895}	lnc-RP11-305N23.1.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-305N23.1.1-1:4	chr11	119369261	119370155	+	lnc-RP11-305N23.1.1-1	lnc-RP11-305N23.1.1-1:4	ENSG00000245248.3	RP11-305N23.1	NA	NA	NA	inter
CUST_41409_PI429285431	5.9880323	P	6.18146	P	0.874525465483957	0	lncRNA	42535-1_{1..83}	ENST00000362183 ncrna:miRNA chromosome:GRCh37:17:7126616:7126698:-1 gene:ENSG00000199053 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362183 ncrna:miRNA chromosome:GRCh37:17:7126616:7126698:-1 gene:ENSG00000199053 gene_biotype:miRNA transcript_biotype:miRNA	chr17	  7126616	  7126698	-	ENSG00000199053	ENST00000362183	NA	NA	DLG4	NA	chr17:7116616-7123369	inner
CUST_29243_PI429285431	1.8932211	A	2.0011356	A	0.927928467672362	0	lncRNA	30994-1_{1..383}	n332326|FM177952|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000559037_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000559037_04|-1.1049100|-0.1324184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332326|FM177952|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000559037_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000559037_04|-1.1049100|-0.1324184	chr6	  2429590	  2429972	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15323_PI429285431	1.3850073	A	1.3350961	A	1.03520120372491	0	lncRNA	17002-1_{1..443}	lnc-C2CD4A-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2CD4A-5:3	chr15	 62897012	 62897454	+	lnc-C2CD4A-5	lnc-C2CD4A-5:3	XLOC_011280	linc-TLN2-1	NA	NA	NA	inter
CUST_47893_PI429285431	3.3554792	P	3.5450819	P	0.876847160707549	0	lncRNA	51787-1_{1..3000}	"gi|410171792|ref|XR_171381.1| PREDICTED: Homo sapiens PRKAR2A antisense RNA 1 (PRKAR2A-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410171792|ref|XR_171381.1| PREDICTED: Homo sapiens PRKAR2A antisense RNA 1 (PRKAR2A-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_171381.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40"	NA	Unknown
CUST_5015_PI429285431	5.7351665	P	5.1843395	P	1.46492519836111	0	lncRNA	4955-1_{1..557}	"transcript_id ""ENST00000554852.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554852.1"" | genecode_v17"	chr14	101361226	101361782	+	ENSG00000258399.1	ENST00000554852.1	MEG8	MEG8-003	NA	NA	NA	inter
CUST_31305_PI429285431	0.92343754	A	1.3368912	A	0.75082382742797	0	lncRNA	33089-1_{1..2841}	n337769|AK022857|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|151|NULL|-1.0428000|-0.3616125	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337769|AK022857|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|151|NULL|-1.0428000|-0.3616125	chr15	 55903749	 55906589	-	NA	NA	NA	NA	PRTG	NA	chr15:55903738-55916620	inner
CUST_3813_PI429285431	2.7796838	A	2.856062	A	0.948435651789209	0	lncRNA	3781-1_{1..632}	"transcript_id ""ENST00000575236.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000575236.1"" | genecode_v17"	chr10	119585414	119586045	-	ENSG00000263041.1	ENST00000575236.1	RP11-355F22.1	RP11-355F22.1-001	NA	NA	NA	inter
CUST_37849_PI429285431	2.2230196	A	2.86448	A	0.641063689309006	0	lncRNA	38940-1_{1..949}	n346378|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1928|NULL|-1.4163000|-0.2286703	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346378|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1928|NULL|-1.4163000|-0.2286703	chr9	139543110	139544058	+	NA	NA	NA	NA	EGFL7	NA	chr9:139557377-139558550	inter
CUST_7113_PI429285431	0.9341981	A	0.92749536	A	1.00465679465639	0	lncRNA	7049-1_{1..639}	"transcript_id ""ENST00000438994.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438994.1"" | genecode_v17"	chrX	125243745	125244383	+	ENSG00000237208.1	ENST00000438994.1	RP11-13E5.2	RP11-13E5.2-001	NA	NA	NA	inter
CUST_1517_PI429285431	0.96448314	A	1.5444643	A	0.668972513376408	0	lncRNA	1504-1_{1..466}	"transcript_id ""ENST00000491909.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000491909.1"" | genecode_v17"	chr3	157694350	157694815	-	ENSG00000239716.1	ENST00000491909.1	RP11-290K4.1	RP11-290K4.1-001	NA	NA	NA	inter
LNCA_21_P0014614	3.300773	P	2.9812398	A	1.24792670302913	0	lncRNA	XR_110550	XR_110550	XR_110550	NA	NA	LOC100506913	uncharacterized LOC100506913	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506913, transcript variant 2 (LOC100506913), miscRNA [XR_110550]"	chr10:45473321-45473380	hs|10q11.21	Agilent_HUMAN_G3V2	XR_110550	XR_110550	chr10	 45473321	 45473380	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41485_PI429285431	0.9177973	A	0.9139051	A	1.00270150997552	0	lncRNA	42687-1_{1..80}	ENST00000516645 ncrna:miRNA chromosome:GRCh37:X:149396239:149396318:1 gene:ENSG00000252454 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516645 ncrna:miRNA chromosome:GRCh37:X:149396239:149396318:1 gene:ENSG00000252454 gene_biotype:miRNA transcript_biotype:miRNA	chrX	149396239	149396318	+	ENSG00000252454	ENST00000516645	NA	NA	NA	NA	NA	inter
CUST_47460_PI429285431	6.546207	P	6.6461167	P	0.933091393010124	0	lncRNA	51488-1_{1..3000}	"gi|373432687|ref|NR_046082.1| Homo sapiens ubiquitin-conjugating enzyme E2L 3 (UBE2L3), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|373432687|ref|NR_046082.1| Homo sapiens ubiquitin-conjugating enzyme E2L 3 (UBE2L3), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NR_046082.1	NA	NA	NA	NA	NA	Unknown
CUST_27753_PI429285431	4.7512617	P	4.291487	P	1.37532702196631	0	lncRNA	29334-2_{3001..3544}	n324969|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079620|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079620|-0.9013680|-0.2216864	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324969|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079620|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079620|-0.9013680|-0.2216864	chr20	 46425099	 46425642	+	NA	NA	NA	NA	SULF2	"hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10chr20:46412099-46415360"	NA	inter
LNCA_21_P0013725	1.2452981	A	1.0382882	A	1.15429333843187	0	lncRNA	AK309896	NA	AK309896	NA	NA	XLOC_l2_015201	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015201), lincRNA [TCONS_l2_00029960]"	chr9:66523610-66523551	hs|9q13	Agilent_HUMAN_G3V2	AK309896	AK309896	chr9	 66523551	 66523610	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48782_PI429285431	0.9753176	A	0.944713	A	1.02144009785699	0	lncRNA	52620-1_{1..572}	hg19_lincRNAsTranscripts_TCONS_l2_00015083 range=chr2:203210998-203222427 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015083 range=chr2:203210998-203222427 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	203210998	203211569	-	NA	NA	NA	NA	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60"	NA	inter
CUST_8012_PI429285431	0.9258932	A	0.93326056	A	0.9949063520336	0	lncRNA	9624-1_{1..2458}	lnc-TMEM132B-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM132B-9:2	chr12	126957132	126959589	+	lnc-TMEM132B-9	lnc-TMEM132B-9:2	ENSG00000214043	RP5-944M2.3	NA	NA	NA	inter
LNCA_21_P0014936	2.0181613	A	2.8146622	A	0.575743889674182	0	lncRNA	XR_108459	XR_108459	XR_108459	NA	NA	LOC100506487	uncharacterized LOC100506487	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506487 (LOC100506487), miscRNA [XR_108459]"	chr3:106830928-106830987	hs|3q13.12	Agilent_HUMAN_G3V2	XR_108459	XR_108459	chr3	106830928	106830987	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42740_PI429285431	10.906219	P	10.807927	P	1.07050534568784	0	lncRNA	45692-1_{1..98}	ENST00000516696 ncrna:snoRNA chromosome:GRCh37:8:33397558:33397655:1 gene:ENSG00000252505 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516696 ncrna:snoRNA chromosome:GRCh37:8:33397558:33397655:1 gene:ENSG00000252505 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	 33397558	 33397655	+	ENSG00000252505	ENST00000516696	NA	NA	RNF122	NA	chr8:33405273-33407655	inter
CUST_4653_PI429285431	0.91427904	A	1.2038013	A	0.818172946875756	0	lncRNA	4599-1_{1..277}	"transcript_id ""ENST00000448806.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448806.2"" | genecode_v17"	chr13	 76587159	 76587435	-	ENSG00000224933.2	ENST00000448806.2	RP11-20O12.1	RP11-20O12.1-001	NA	NA	NA	inter
CUST_5900_PI429285431	0.92292655	A	0.9205901	A	1.00162081583441	0	lncRNA	5831-1_{1..535}	"transcript_id ""ENST00000592081.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592081.1"" | genecode_v17"	chr17	 49512788	 49513322	+	ENSG00000267452.1	ENST00000592081.1	RP11-1018N14.5	RP11-1018N14.5-002	NA	NA	NA	inter
CUST_9066_PI429285431	1.1414548	A	0.92656296	A	1.16061689874566	0	lncRNA	10589-1_{1..423}	lnc-KIAA0020-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA0020-1:4	chr9	  2521903	  2522325	-	lnc-KIAA0020-1	lnc-KIAA0020-1:4	ENSG00000236404	RP11-125B21.2	NA	NA	NA	inter
CUST_30424_PI429285431	3.0919392	A	2.9391263	A	1.11173496966353	0	lncRNA	32204-1_{1..731}	n335559|CR407653|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267150|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267150|3.5880000|-0.3153072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335559|CR407653|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267150|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267150|3.5880000|-0.3153072	chr10	 60145308	 60146038	+	NA	NA	NA	NA	TFAM	NA	chr10:60145176-60155897	inter
CUST_23678_PI429285431	5.0544305	P	5.843956	P	0.578534339647162	0	lncRNA	25243-1_{1..544}	lnc-ZNHIT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNHIT2-1:1	chr11	 64878759	 64879302	-	lnc-ZNHIT2-1	lnc-ZNHIT2-1:1	ENSG00000254501.1	AP003068.9	TM7SF2	"hg19_refFlat_VPS51:range=chr11:64863723-648790595'pad=0,hg19_refFlat_VPS51:range=chr11:64863723-648790595'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.30chr11:64879341-64883707"	NA	inter
CUST_22195_PI429285431	5.556361	P	5.738678	P	0.881286493615533	0	lncRNA	23795-1_{1..435}	lnc-AL020996.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL020996.1-1:1	chr1	 26146135	 26146569	-	lnc-AL020996.1-1	lnc-AL020996.1-1:1	ENSG00000228172.1	RP1-317E23.3	FAM54B	NA	chr1:26146397-26156263	inter
CUST_1487_PI429285431	1.1836866	A	1.6023213	A	0.748132287281971	0	lncRNA	1474-1_{1..490}	"transcript_id ""ENST00000477153.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000477153.1"" | genecode_v17"	chr3	147878698	147879187	+	ENSG00000244650.2	ENST00000477153.1	RP11-501O2.3	RP11-501O2.3-002	NA	NA	NA	inter
CUST_32201_PI429285431	1.2512063	A	1.0994343	A	1.11093314562059	0	lncRNA	33898-1_{1..648}	n338778|BC042033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1200|NULL|-1.0445700|-0.1774595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338778|BC042033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1200|NULL|-1.0445700|-0.1774595	chr19	 48968867	 48969514	-	NA	NA	NA	NA	CYTH2	NA	chr19:48972465-48982950	inner
CUST_4689_PI429285431	1.9430696	A	2.6148582	A	0.627727970706907	0	lncRNA	4636-1_{1..739}	"transcript_id ""ENST00000444865.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444865.1"" | genecode_v17"	chr13	107029140	107029878	+	ENSG00000233532.1	ENST00000444865.1	LINC00460	LINC00460-003	NA	NA	NA	inter
LNCA_19_P00812329	5.6086483	P	5.8004193	P	0.875530292205123	0	lncRNA	TCONS_00016491	NA	NA	NA	NA	XLOC_007868	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007868), lincRNA [TCONS_00016491]"	chr9:132265880-132265821	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_00016491	TCONS_00016491	chr9	132265821	132265880	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26430_PI429285431	4.323354	P	4.375832	P	0.964278642654328	0	lncRNA	27937-1_{1..665}	lnc-IL11RA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL11RA-1:1	chr9	 34680903	 34681567	+	lnc-IL11RA-1	lnc-IL11RA-1:1	ENSG00000230074.1	RP11-195F19.9	CCL19	NA	chr9:34689567-34691274	inter
CUST_3682_PI429285431	4.2393923	P	3.4995794	P	1.66995925140866	0	lncRNA	3650-1_{1..407}	"transcript_id ""ENST00000424615.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424615.2"" | genecode_v17"	chr10	 46937463	 46937869	-	ENSG00000229227.3	ENST00000424615.2	RP11-38L15.2	RP11-38L15.2-001	SYT15	NA	chr10:46955444-46957262	inter
CUST_35427_PI429285431	4.810093	P	5.421246	P	0.654673278764705	0	lncRNA	36835-1_{1..1386}	n342489|BC034913|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4983|NULL|-1.1035200|-0.3557144	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n342489|BC034913|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4983|NULL|-1.1035200|-0.3557144	chr3	 16577826	 16579211	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43221_PI429285431	3.051869	A	2.7598853	A	1.22432255955966	0	lncRNA	48035-1_{1..925}	ENST00000602609 havana:sense_intronic chromosome:GRCh37:7:141362722:141363646:-1 gene:ENSG00000270157 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602609 havana:sense_intronic chromosome:GRCh37:7:141362722:141363646:-1 gene:ENSG00000270157 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr7	141362722	141363646	-	ENSG00000270157	ENST00000602609	NA	NA	AGK	NA	chr7:141352722-141354209	inner
CUST_48752_PI429285431	3.4238262	P	3.4740217	P	0.9658054434968	0	lncRNA	52589-1_{1..244}	hg19_lincRNAsTranscripts_TCONS_l2_00014005 range=chr2:136758038-136762794 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014005 range=chr2:136758038-136762794 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	136758038	136758281	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32998_PI429285431	6.048999	P	4.091684	P	3.883385690239	0	lncRNA	34613-1_{1..1298}	n339680|BC026001|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2124|NULL|-1.0473100|-0.4294307	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n339680|BC026001|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2124|NULL|-1.0473100|-0.4294307	chr3	169805371	169806668	-	NA	NA	NA	NA	PHC3	NA	chr3:169805368-169816638	inner
CUST_15162_PI429285431	2.7105188	A	3.1003923	A	0.76319652099738	0	lncRNA	16824-1_{1..389}	lnc-RP11-1007G5.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-1007G5.2.1-2:1	chr11	128163003	128163391	+	lnc-RP11-1007G5.2.1-2	lnc-RP11-1007G5.2.1-2:1	XLOC_009327	linc-FLI1-1	NA	NA	NA	inter
CUST_42931_PI429285431	1.0029742	A	0.98314416	A	1.01384003500254	0	lncRNA	46044-1_{1..68}	ENST00000411072 ncrna:snoRNA chromosome:GRCh37:5:24811590:24811657:1 gene:ENSG00000223004 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000411072 ncrna:snoRNA chromosome:GRCh37:5:24811590:24811657:1 gene:ENSG00000223004 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	 24811590	 24811657	+	ENSG00000223004	ENST00000411072	NA	NA	NA	NA	NA	inter
CUST_11142_PI429285431	0.9279031	A	1.3995198	A	0.721156009398732	0	lncRNA	12699-1_{1..1155}	lnc-RP11-463J10.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-463J10.2.1-1:1	chr14	 52310680	 52311834	-	lnc-RP11-463J10.2.1-1	lnc-RP11-463J10.2.1-1:1	XLOC_011021	linc-TRIM9-2	NA	NA	NA	inter
CUST_24386_PI429285431	1.0216179	A	0.9735055	A	1.03391128487275	0	lncRNA	25939-1_{1..2463}	lnc-C10orf25-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf25-1:1	chr10	 45567013	 45569475	-	lnc-C10orf25-1	lnc-C10orf25-1:1	ENSG00000226937.1	RP11-285G1.8	NA	"hg19_refFlat_ZNF22:range=chr10:45498817-454994915'pad=0,hg19_refFlat_ZNF22:range=chr10:45498817-454994915'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00"	NA	inter
CUST_29649_PI429285431	8.287125	P	8.647304	P	0.779067912101604	0	lncRNA	31411-1_{1..365}	n333257|AF538037|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000081444|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000081444|1.3187900|-0.1102158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333257|AF538037|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000081444|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000081444|1.3187900|-0.1102158	chr19	 38874993	 38875357	-	NA	NA	NA	NA	SPRED3	NA	chr19:38880939-38886871	inner
CUST_47248_PI429285431	4.747162	P	4.5988336	P	1.10828459746067	0	lncRNA	51321-1_{1..3000}	"gi|222418605|ref|NR_026713.1| Homo sapiens family with sequence similarity 182, member A (FAM182A), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ncbi,"	">gi|222418605|ref|NR_026713.1| Homo sapiens family with sequence similarity 182, member A (FAM182A), non-coding RNA"	Chr20	 26035250	 26038249	+	284800	NR_026713.1	NA	NA	NA	NA	NA	inter
CUST_32132_PI429285431	3.3054435	P	3.305171	P	1.00018890044615	0	lncRNA	33832-1_{1..1470}	n338699|CR618947|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1119|NULL|-0.6251430|-0.1643753	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338699|CR618947|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1119|NULL|-0.6251430|-0.1643753	chr2	 23839387	 23840856	-	NA	NA	NA	NA	KLHL29	NA	chr2:23829387-23850857	inner
CUST_32086_PI429285431	0.9205114	A	1.1056662	A	0.879554695358347	0	lncRNA	33792-2_{3001..3287}	n338649|BX538340|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1063|NULL|-0.9940940|-0.2198391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338649|BX538340|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1063|NULL|-0.9940940|-0.2198391	chr2	  9249721	  9250007	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30"	NA	inter
CUST_41091_PI429285431	0.92021704	A	0.9075878	A	1.00879234972363	0	lncRNA	41790-1_{1..82}	ENST00000578255 ncrna:miRNA chromosome:GRCh37:16:1784986:1785067:1 gene:ENSG00000265820 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578255 ncrna:miRNA chromosome:GRCh37:16:1784986:1785067:1 gene:ENSG00000265820 gene_biotype:miRNA transcript_biotype:miRNA	chr16	  1784986	  1785067	+	ENSG00000265820	ENST00000578255	NA	NA	MAPK8IP3	NA	chr16:1774986-1795067	inner
CUST_22671_PI429285431	2.0956767	A	2.952067	P	0.552332796642229	0	lncRNA	24254-1_{1..300}	lnc-C10orf122-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C10orf122-2:1	chr10	127407846	127408145	-	lnc-C10orf122-2	lnc-C10orf122-2:1	ENSG00000234134.1	RP11-383C5.5	C10orf137	NA	chr10:127408084-127417934	inter
CUST_22779_PI429285431	0.91726774	A	1.3388488	A	0.746605964898804	0	lncRNA	24359-1_{1..434}	lnc-ZNF503-AS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZNF503-AS2-1:1	chr10	 77503224	 77503657	+	lnc-ZNF503-AS2-1	lnc-ZNF503-AS2-1:1	ENSG00000228280.1	RP11-367B6.2	NA	NA	NA	inter
CUST_26950_PI429285431	8.236386	P	8.274614	P	0.97385035145063	0	lncRNA	28471-1_{1..476}	n324031|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053053|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053053|-1.0709000|-0.2364654	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324031|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053053|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053053|-1.0709000|-0.2364654	chr9	 93947043	 93947518	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24484_PI429285431	5.103059	P	5.074377	P	1.02007978765983	0	lncRNA	26036-1_{1..1348}	lnc-C1orf131-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf131-1:1	chr1	231323263	231324610	-	lnc-C1orf131-1	lnc-C1orf131-1:1	ENSG00000235710.3	RP5-1097F14.3	TRIM67	NA	chr1:231313263-231333373	inner
CUST_9960_PI429285431	0.91886795	A	0.91153395	A	1.00509648454192	0	lncRNA	11484-1_{1..1015}	lnc-CXorf30-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CXorf30-1:1	chrX	 36219391	 36220405	+	lnc-CXorf30-1	lnc-CXorf30-1:1	XLOC_007950	linc-CXorf30	CXorf30	NA	chrX:36229231-36230007	inter
CUST_18163_PI429285431	2.100519	A	2.1806867	A	0.945947682636033	0	lncRNA	19898-1_{1..519}	lnc-KRTAP5-5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KRTAP5-5-1:3	chr11	  1618478	  1618996	+	lnc-KRTAP5-5-1	lnc-KRTAP5-5-1:3	ENSG00000233930	RP13-25N22.1	KRTAP5-2	NA	chr11:1618407-1619524	inner
CUST_41336_PI429285431	12.750686	P	12.388693	P	1.28520010162446	0	lncRNA	42397-1_{1..77}	ENST00000578074 ncrna:miRNA chromosome:GRCh37:2:130941016:130941092:1 gene:ENSG00000265280 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578074 ncrna:miRNA chromosome:GRCh37:2:130941016:130941092:1 gene:ENSG00000265280 gene_biotype:miRNA transcript_biotype:miRNA	chr2	130941016	130941092	+	ENSG00000265280	ENST00000578074	NA	NA	MZT2B	NA	chr2:130939501-130948300	inner
CUST_10860_PI429285431	3.621273	P	3.443557	P	1.13109178121429	0	lncRNA	12397-1_{1..276}	lnc-RGL4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RGL4-1:1	chr22	 24025912	 24026187	+	lnc-RGL4-1	lnc-RGL4-1:1	XLOC_014177	linc-RGL4-1	RGL4	"hg19_refFlat_GUSB:range=chr7:65425884-654471705'pad=0,hg19_refFlat_GUSB:range=chr7:65425884-654471705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80chr22:24033048-24036054"	NA	inter
CUST_23055_PI429285431	0.9045104	A	0.889738	A	1.01029204993871	0	lncRNA	24626-1_{1..281}	lnc-TBK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBK1-1:1	chr12	 65023674	 65023954	+	lnc-TBK1-1	lnc-TBK1-1:1	ENSG00000225195.2	RP11-338E21.2	RASSF3	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-23.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10chr12:65013674-65033756"	NA	inner
CUST_30708_PI429285431	1.7092189	A	1.589395	A	1.08660222026662	0	lncRNA	32490-1_{1..537}	n336218|X94572|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324873_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324873_03|-0.9700990|-0.1726660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336218|X94572|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324873_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324873_03|-0.9700990|-0.1726660	chr6	  1292426	  1292962	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23277_PI429285431	0.9265384	A	0.96921563	A	0.970851651313437	0	lncRNA	24848-1_{1..1138}	lnc-HES3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-HES3-1:1	chr1	  6298281	  6299418	+	lnc-HES3-1	lnc-HES3-1:1	ENSG00000225077.2	LINC00337	ICMT	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr1:6288281-6296044"	NA	inter
CUST_19547_PI429285431	8.823957	P	9.492431	P	0.629171837273601	0	lncRNA	21203-1_{1..2030}	lnc-RPS25-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS25-1:2	chr11	118901559	118903588	-	lnc-RPS25-1	lnc-RPS25-1:2	ENSG00000137700.10	SLC37A4	SLC37A4	NA	chr11:118895061-118901616	inner
CUST_20079_PI429285431	1.826032	A	1.5987722	A	1.17060942541607	0	lncRNA	21727-1_{1..471}	lnc-PRDX3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRDX3-1:1	chr10	121095433	121095903	-	lnc-PRDX3-1	lnc-PRDX3-1:1	ENSG00000236426.1	RP11-79M19.2	GRK5	NA	chr10:121085433-121105542	inner
CUST_37823_PI429285431	2.9462447	A	2.9914863	A	0.969127509028132	0	lncRNA	38916-1_{1..1367}	n346344|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1894|NULL|-1.3605500|-0.1183203	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n346344|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1894|NULL|-1.3605500|-0.1183203	chr19	   781001	   782367	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6463_PI429285431	5.6589518	P	6.898067	P	0.42363238884101	0	lncRNA	6405-1_{1..569}	"transcript_id ""ENST00000604605.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604605.1"" | genecode_v17"	chr19	 33774884	 33775452	-	ENSG00000270212.1	ENST00000604605.1	CTD-2540B15.12	CTD-2540B15.12-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10"	NA	inter
LNCA_21_P0012866	6.1269507	P	6.4437475	P	0.802850460238736	0	lncRNA	TCONS_l2_00022657	NA	NA	NA	NA	XLOC_l2_011872	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011872), lincRNA [TCONS_l2_00022657]"	chr5:177359991-177360050	hs|5q35.3	Agilent_HUMAN_G3V2	TCONS_l2_00022657	TCONS_l2_00022657	chr5	177359991	177360050	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50193_PI429285431	5.4792895	P	6.795297	P	0.401644910380311	0	lncRNA	53918-1_{1..342}	hg19_lincRNAsTranscripts_TCONS_l2_00028737 range=chr9:40301995-40308427 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028737 range=chr9:40301995-40308427 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 40301995	 40302336	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13706_PI429285431	4.961715	P	5.2786655	P	0.802764931738769	0	lncRNA	15344-1_{1..2670}	lnc-GARS-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GARS-4:1	chr7	 30443218	 30445887	+	lnc-GARS-4	lnc-GARS-4:1	XLOC_006035	linc-GARS-3	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_38358_PI429285431	0.9164018	A	1.0280854	A	0.92550738044195	0	lncRNA	39400-1_{1..203}	n382136|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001wda.1||-0.1446480|-0.1873288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382136|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001wda.1||-0.1446480|-0.1873288	chr14	 22564609	 22564811	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48884_PI429285431	4.055948	P	4.33514	P	0.824052409251359	0	lncRNA	52721-1_{1..556}	hg19_lincRNAsTranscripts_TCONS_l2_00019358 range=chr3:75436009-75441293 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019358 range=chr3:75436009-75441293 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 75436009	 75436564	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51476_PI429285431	4.158011	P	5.387901	P	0.426349952204124	0	lncRNA	55051-1_{1..709}	hg19_lincRNAsTranscripts_TCONS_l2_00010134 range=chr16:33726351-33736655 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010134 range=chr16:33726351-33736655 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 33726351	 33727059	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006853	3.4450002	P	4.759299	P	0.40212089263163	0	lncRNA	ENST00000420945	NA	NA	NA	NA	XLOC_008441	NA	ENST00000420945	THC2712993	NA	"BROAD Institute lincRNA (XLOC_008441), lincRNA [TCONS_00018154]"	chr10:31894980-31895039	hs|10p11.22	Agilent_HUMAN_G3V2	ENST00000420945	ENST00000420945	chr10	 31894980	 31895039	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35838_PI429285431	5.574252	P	5.4464016	P	1.09266442958686	0	lncRNA	37238-3_{6001..6264}	n344509|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_57|NULL|-1.4764100|-0.3572130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344509|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_57|NULL|-1.4764100|-0.3572130	chr18	 37092725	 37092988	+	NA	NA	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60"	NA	inter
CUST_2968_PI429285431	0.9502765	A	1.3084469	A	0.780153329043615	0	lncRNA	2947-1_{1..815}	"transcript_id ""ENST00000518539.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518539.2"" | genecode_v17"	chr8	  1919563	  1920377	+	ENSG00000253696.2	ENST00000518539.2	RP11-439C15.2	RP11-439C15.2-001	KBTBD11	NA	chr8:1922044-1934644	inner
CUST_23262_PI429285431	6.701042	P	6.7198567	P	0.987043313758165	0	lncRNA	24834-1_{1..561}	lnc-MSX2-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MSX2-4:4	chr5	173953231	173953791	+	lnc-MSX2-4	lnc-MSX2-4:4	ENSG00000249306.1	RP11-267A15.1	NA	NA	NA	inter
CUST_8960_PI429285431	0.91034603	A	0.90261054	A	1.00537623343668	0	lncRNA	10494-1_{1..638}	lnc-SWAP70-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SWAP70-1:4	chr11	  9829395	  9830032	+	lnc-SWAP70-1	lnc-SWAP70-1:4	ENSG00000246273	RP11-540A21.3	SBF2	"hg19_refFlat_SBF2:range=chr11:9801965-103156165'pad=0,hg19_refFlat_SBF2:range=chr11:9801965-103156165'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50chr11:9819395-9839585"	NA	inner
CUST_27853_PI429285431	1.2042346	A	1.4624282	A	0.836134188784091	0	lncRNA	29446-1_{1..747}	n325089|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332142|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332142|-1.3374800|-0.3476069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325089|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332142|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332142|-1.3374800|-0.3476069	chr20	  1702010	  1702756	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003251	2.5190063	A	2.482814	A	1.02540390712548	0	lncRNA	TCONS_00006981	NA	NA	NA	NA	XLOC_002825	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002825), lincRNA [TCONS_00006981]"	chr3:130278969-130279028	hs|3q22.1	Agilent_HUMAN_G3V2	TCONS_00006981	TCONS_00006981	chr3	130278969	130279028	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35807_PI429285431	4.1382575	P	4.1970744	P	0.960051098431213	0	lncRNA	37213-1_{1..848}	n344483|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_31|NULL|-1.4313600|-0.3490583	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344483|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_31|NULL|-1.4313600|-0.3490583	chr5	 25349949	 25350796	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11065_PI429285431	2.2502396	A	2.3211565	A	0.952032744509556	0	lncRNA	12616-1_{1..1880}	lnc-CPNE5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPNE5-1:1	chr6	 36816221	 36818100	-	lnc-CPNE5-1	lnc-CPNE5-1:1	XLOC_005701	linc-CPNE5	PPIL1	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00chr6:36822605-36826400"	NA	inter
CUST_44669_PI429285431	5.071118	P	5.34801	P	0.825367193101859	0	lncRNA	49230-1_{1..701}	"gi|222831604|ref|NR_026736.1| Homo sapiens chromosome 6 open reading frame 52 (C6orf52), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|222831604|ref|NR_026736.1| Homo sapiens chromosome 6 open reading frame 52 (C6orf52), transcript variant 2, non-coding RNA"	Chr6	 10671651	 10672351	-	347744	NR_026736.1	NA	NA	NA	NA	NA	inter
CUST_19689_PI429285431	0.9002402	A	0.8957513	A	1.00311631402094	0	lncRNA	21347-1_{1..901}	lnc-CLLU1.1-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLLU1.1-8:2	chr12	 91204299	 91205199	+	lnc-CLLU1.1-8	lnc-CLLU1.1-8:2	ENSG00000257787.1	RP11-20L19.1	NA	NA	NA	inter
CUST_33118_PI429285431	11.923823	P	11.614502	P	1.23912437259035	0	lncRNA	34717-1_{1..1954}	n339806|CR622423|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2253|NULL|1.0339600|-0.1738879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339806|CR622423|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2253|NULL|1.0339600|-0.1738879	chr4	  2845576	  2847529	+	NA	NA	NA	NA	ADD1	NA	chr4:2845584-2931789	inner
CUST_5904_PI429285431	1.247422	A	1.548984	A	0.811373449921866	0	lncRNA	5835-1_{1..1763}	"transcript_id ""ENST00000576751.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000576751.1"" | genecode_v17"	chr17	 53403118	 53404880	-	ENSG00000262079.1	ENST00000576751.1	RP11-515O17.3	RP11-515O17.3-001	HLF	"hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70chr17:53393118-53402426"	NA	inter
CUST_39419_PI429285431	1.9240757	A	2.293969	A	0.773839726915651	0	lncRNA	40379-1_{1..1180}	n386715|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010sxs.1||-1.1217200|-0.1906639	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n386715|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010sxs.1||-1.1217200|-0.1906639	chr12	110171130	110172309	-	NA	NA	NA	NA	TRPV4	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80chr12:110220892-110221292"	NA	inter
CUST_42147_PI429285431	4.8968534	P	5.332156	P	0.739538622838735	0	lncRNA	44173-1_{1..94}	ENST00000385049 ncrna:miRNA chromosome:GRCh37:3:44903380:44903473:1 gene:ENSG00000207783 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385049 ncrna:miRNA chromosome:GRCh37:3:44903380:44903473:1 gene:ENSG00000207783 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 44903380	 44903473	+	ENSG00000207783	ENST00000385049	NA	NA	KIF15	NA	chr3:44893380-44894748	inner
CUST_17745_PI429285431	5.660963	P	5.74189	P	0.945449955066292	0	lncRNA	19475-1_{1..496}	lnc-AC074091.13.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC074091.13.1-1:1	chr2	 27958291	 27958786	-	lnc-AC074091.13.1-1	lnc-AC074091.13.1-1:1	XLOC_002030	linc-SUPT7L	NA	NA	NA	inter
CUST_30505_PI429285431	7.625062	P	7.910959	P	0.820231468842758	0	lncRNA	32285-1_{1..1144}	n335661|CR611917|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000291112|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000291112|6.3988600|-0.0602194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335661|CR611917|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000291112|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000291112|6.3988600|-0.0602194	chr12	 56137096	 56138239	+	NA	NA	NA	NA	SARNP	NA	chr12:56146247-56153584	inner
CUST_34571_PI429285431	2.3220873	A	0.90094763	A	2.67796976065912	0	lncRNA	36031-1_{1..1396}	n341454|AL512749|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3924|NULL|-1.2005700|-0.3602188	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341454|AL512749|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3924|NULL|-1.2005700|-0.3602188	chr8	 17426648	 17428043	+	NA	NA	NA	NA	PDGFRL	NA	chr8:17433942-17438025	inner
CUST_37936_PI429285431	5.104303	P	5.140053	P	0.975524492394678	0	lncRNA	39026-1_{1..793}	n346482|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2032|NULL|-1.3472300|-0.2943431	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346482|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2032|NULL|-1.3472300|-0.2943431	chr19	 29212860	 29213652	-	NA	NA	NA	NA	NA	"hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60"	NA	inter
CUST_11759_PI429285431	0.9167566	A	1.7240148	A	0.571466882782247	0	lncRNA	13339-1_{1..540}	lnc-INTS6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INTS6-1:1	chr13	 51898734	 51899273	-	lnc-INTS6-1	lnc-INTS6-1:1	XLOC_010617	linc-DLEU7-2	NA	NA	NA	inter
CUST_17778_PI429285431	0.90603614	A	0.90204024	A	1.00277358611132	0	lncRNA	19510-1_{1..679}	lnc-RP11-17M16.1.1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-17M16.1.1-6:1	chr18	 73963073	 73963751	+	lnc-RP11-17M16.1.1-6	lnc-RP11-17M16.1.1-6:1	XLOC_012725	linc-ZNF236-5	NA	NA	NA	inter
CUST_7315_PI429285431	1.188133	A	1.7054135	A	0.698687628431318	0	lncRNA	8532-1_{1..273}	"transcript_id ""ENST00000469674.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000469674.2"" | genecode_v17"	chr15	 90837183	 90837455	+	ENSG00000242620.2	ENST00000469674.2	RN7SL736P	RN7SL736P-201	NA	NA	NA	inter
CUST_38550_PI429285431	1.576897	A	0.96036553	A	1.53318466138081	0	lncRNA	39557-1_{1..2409}	n383327|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002lcc.1||2.1604300|-0.2559382	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383327|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002lcc.1||2.1604300|-0.2559382	chr18	 43914681	 43917089	+	NA	NA	NA	NA	RNF165	NA	chr18:43914187-43927090	inner
LNCA_21_P0014168	6.01177	P	6.3799543	P	0.774756951741181	0	lncRNA	XR_108680	XR_108680	XR_108680	NA	Hs.664092	LOC100506681	uncharacterized LOC100506681	ENST00000441978	THC2651491	NA	"PREDICTED: Homo sapiens hypothetical LOC100506681 (LOC100506681), miscRNA [XR_108680]"	chr6:15248107-15248048	hs|6p22.3	Agilent_HUMAN_G3V2	XR_108680	XR_108680	chr6	 15248048	 15248107	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40332_PI429285431	4.7551785	P	5.1201887	P	0.776463385306889	0	lncRNA	41137-1_{1..603}	n408375|NR_029462_7|lncRNA|Homosapiens||RefGeneNoncode|NR_029462_7||-1.2625100|-0.2349067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408375|NR_029462_7|lncRNA|Homosapiens||RefGeneNoncode|NR_029462_7||-1.2625100|-0.2349067	chr6	  3063571	  3064173	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10828_PI429285431	3.2605128	P	3.6472852	P	0.764838790619867	0	lncRNA	12362-2_{3001..3548}	lnc-MLN-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-MLN-1:4	chr6	 33863473	 33864020	-	lnc-MLN-1	lnc-MLN-1:4	XLOC_005689	linc-MLN	NA	NA	NA	inter
CUST_51198_PI429285431	0.9301342	A	0.9108388	A	1.01346439150358	0	lncRNA	54817-1_{1..2913}	hg19_lincRNAsTranscripts_TCONS_l2_00008938 range=chr15:23189970-23208182 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008938 range=chr15:23189970-23208182 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 23189970	 23192882	-	NA	NA	NA	NA	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30"	NA	inter
CUST_13483_PI429285431	2.133662	A	1.6975031	A	1.35299724343102	0	lncRNA	15121-1_{1..850}	lnc-RP11-1070N10.3.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-1070N10.3.1-1:3	chr14	 95795780	 95796629	+	lnc-RP11-1070N10.3.1-1	lnc-RP11-1070N10.3.1-1:3	XLOC_010915	linc-GLRX5-2	CLMN	NA	chr14:95785780-95786245	inter
CUST_16802_PI429285431	1.240473	A	1.7055657	A	0.724424528069616	0	lncRNA	18510-1_{1..3000}	lnc-ARFGEF2-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARFGEF2-3:7	chr20	 46996823	 46999822	+	lnc-ARFGEF2-3	lnc-ARFGEF2-3:7	XLOC_013551	linc-ARFGEF2-4	NA	NA	NA	inter
LNCA_21_P0005200	0.92908835	A	1.3038925	A	0.771210099586526	0	lncRNA	ENST00000470532	XR_108799	XR_108799	NA	Hs.149763	XLOC_006568	NA	ENST00000470532	THC2608379	NA	"PREDICTED: Homo sapiens hypothetical LOC100506489 (LOC100506489), miscRNA [XR_108799]"	chr7:115319459-115319400	hs|7q31.2	Agilent_HUMAN_G3V2	ENST00000470532	ENST00000470532	chr7	115319400	115319459	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6409_PI429285431	5.7420225	P	4.778344	P	1.95027626176541	0	lncRNA	6347-1_{1..562}	"transcript_id ""ENST00000588027.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588027.1"" | genecode_v17"	chr19	 28175488	 28176049	-	ENSG00000261824.2	ENST00000588027.1	LINC00662	LINC00662-009	NA	NA	NA	inter
CUST_35205_PI429285431	5.1492405	P	4.7968364	P	1.27668631957989	0	lncRNA	36605-1_{1..1373}	n342188|BC015835|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4678|NULL|-1.1571200|-0.3474295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342188|BC015835|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4678|NULL|-1.1571200|-0.3474295	chr6	170884681	170886053	-	NA	NA	NA	NA	PDCD2	NA	chr6:170884660-170893780	inner
CUST_27361_PI429285431	3.7379193	P	4.6987333	P	0.513766953017192	0	lncRNA	28924-1_{1..824}	n324523|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040482|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040482|-1.0746300|-0.2471639	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324523|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040482|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040482|-1.0746300|-0.2471639	chr6	 40434460	 40435283	-	NA	NA	NA	NA	LRFN2	NA	chr6:40424460-40455191	inner
CUST_49465_PI429285431	0.930408	A	0.96623135	A	0.975474895702019	0	lncRNA	53260-1_{1..772}	hg19_lincRNAsTranscripts_TCONS_l2_00024926 range=chr6:134846174-135027983 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024926 range=chr6:134846174-135027983 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	134846174	134846945	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51405_PI429285431	0.91232836	A	0.910261	A	1.00143401196846	0	lncRNA	54986-1_{1..728}	hg19_lincRNAsTranscripts_TCONS_l2_00009841 range=chr16:76613405-76684983 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009841 range=chr16:76613405-76684983 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 76613405	 76614132	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34385_PI429285431	0.9005535	A	1.372492	A	0.720995170054841	0	lncRNA	35870-1_{1..516}	n341256|BC017910|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3724|NULL|-0.9730680|-0.1226744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341256|BC017910|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3724|NULL|-0.9730680|-0.1226744	chr7	 66800962	 66801477	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26254_PI429285431	6.255802	P	6.2304363	P	1.01773763953894	0	lncRNA	27761-1_{1..572}	lnc-RHOBTB2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RHOBTB2-2:1	chr8	 22741471	 22742042	+	lnc-RHOBTB2-2	lnc-RHOBTB2-2:1	ENSG00000248738.2	RP11-87E22.2	PEBP4	NA	chr8:22731471-22751652	inner
CUST_18899_PI429285431	10.268629	P	10.462112	P	0.874491944656608	0	lncRNA	20591-1_{1..566}	lnc-SLC7A13-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC7A13-1:2	chr8	 87355311	 87355876	-	lnc-SLC7A13-1	lnc-SLC7A13-1:2	ENSG00000254231	CTD-2284J15.1	WWP1	NA	chr8:87354994-87365421	inner
CUST_46170_PI429285431	0.91798997	A	0.90431774	A	1.00952191537819	0	lncRNA	50418-1_{1..3000}	"gi|388556535|ref|NR_027248.2| Homo sapiens ankyrin repeat domain 26 pseudogene 3 (ANKRD26P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|388556535|ref|NR_027248.2| Homo sapiens ankyrin repeat domain 26 pseudogene 3 (ANKRD26P3), non-coding RNA"	Chr13	 19836940	 19839939	-	100101938	NR_027248.2	NA	NA	NA	NA	NA	inter
CUST_13552_PI429285431	2.7366993	A	2.7464366	A	0.993273343880317	0	lncRNA	15193-1_{1..1198}	lnc-AP001496.1-10:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP001496.1-10:3	chr18	  5889272	  5890469	+	lnc-AP001496.1-10	lnc-AP001496.1-10:3	XLOC_012618	linc-ARHGAP28-2	TMEM200C	NA	chr18:5890184-5892103	inter
CUST_16888_PI429285431	0.9054737	A	1.3032262	A	0.75903983158211	0	lncRNA	18597-1_{1..557}	lnc-CAST-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CAST-1:1	chr5	 95881932	 95882488	+	lnc-CAST-1	lnc-CAST-1:1	XLOC_004480	linc-CAST-1	NA	NA	NA	inter
LNCA_21_P0010894	4.744266	P	4.7884784	P	0.969819118733614	0	lncRNA	TCONS_l2_00003697	NA	NA	NA	NA	XLOC_l2_002049	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002049), lincRNA [TCONS_l2_00003697]"	chr10:89148430-89147891	hs|10q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00003697	TCONS_l2_00003697	chr10	 89147891	 89148430	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21827_PI429285431	1.0936214	A	0.950317	A	1.10443185107695	0	lncRNA	23437-1_{1..688}	lnc-CCT5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCT5-1:1	chr5	 10249511	 10250198	+	lnc-CCT5-1	lnc-CCT5-1:1	ENSG00000248968.1	CTD-2256P15.1	CCT5	NA	chr5:10250282-10260027	inner
CUST_10921_PI429285431	0.9205163	A	1.0488546	A	0.91488461013341	0	lncRNA	12463-3_{6001..9000}	lnc-CRYBA4-1:28	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,ncbi,"	>lnc-CRYBA4-1:28	chr22	 27070121	 27073120	+	lnc-CRYBA4-1	lnc-CRYBA4-1:28	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
CUST_13982_PI429285431	0.9162451	A	0.9127656	A	1.0024147163575	0	lncRNA	15627-1_{1..1042}	lnc-MAPK6-11:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAPK6-11:1	chr15	 53086548	 53087589	+	lnc-MAPK6-11	lnc-MAPK6-11:1	XLOC_011257	linc-UNC13C-4	ONECUT1	NA	chr15:53076548-53082209	inter
LNCA_21_P0011756	4.1627955	P	4.5075793	P	0.787425970139914	0	lncRNA	THC2541425	NA	NA	NA	NA	XLOC_l2_007088	NA	NA	THC2541425	NA	"BROAD Institute lincRNA (XLOC_l2_007088), lincRNA [TCONS_l2_00013168]"	NA	NA	Agilent_HUMAN_G3V2	THC2541425	THC2541425	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46352_PI429285431	9.381501	P	9.866697	P	0.714400007144632	0	lncRNA	50576-1_{1..1031}	"gi|364502981|ref|NR_045665.1| Homo sapiens intraflagellar transport 43 homolog (Chlamydomonas) (IFT43), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|364502981|ref|NR_045665.1| Homo sapiens intraflagellar transport 43 homolog (Chlamydomonas) (IFT43), transcript variant 5, non-coding RNA"	Chr14	 76452096	 76453126	+	112752	NR_045665.1	NA	NA	NA	NA	NA	inter
CUST_46470_PI429285431	4.9833593	P	4.424123	P	1.4734890098177	0	lncRNA	50669-1_{1..2445}	"gi|229892271|ref|NR_027642.1| Homo sapiens DDB1 and CUL4 associated factor 13 pseudogene 3 (DCAF13P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|229892271|ref|NR_027642.1| Homo sapiens DDB1 and CUL4 associated factor 13 pseudogene 3 (DCAF13P3), non-coding RNA"	Chr15	 51236326	 51238770	+	100132724	NR_027642.1	NA	NA	NA	NA	NA	inter
CUST_44995_PI429285431	8.226902	P	8.35797	P	0.913155208332488	0	lncRNA	49504-1_{1..918}	"gi|334358869|ref|NR_038345.1| Homo sapiens MAGI2 antisense RNA 3 (MAGI2-AS3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|334358869|ref|NR_038345.1| Homo sapiens MAGI2 antisense RNA 3 (MAGI2-AS3), transcript variant 3, non-coding RNA"	Chr7	 79082273	 79083190	+	100505881	NR_038345.1	NA	NA	NA	"hg19_refFlat_MAGI2:range=chr7:77648632-790826365'pad=0,hg19_refFlat_MAGI2:range=chr7:77648632-790826365'pad=0 3'pad=0 strand=- repeatMasking=none,-100.50"	NA	inter
CUST_41540_PI429285431	1.1530464	A	1.5329615	A	0.768482813140288	0	lncRNA	42814-1_{1..110}	ENST00000385255 ncrna:miRNA chromosome:GRCh37:7:129410223:129410332:-1 gene:ENSG00000207990 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385255 ncrna:miRNA chromosome:GRCh37:7:129410223:129410332:-1 gene:ENSG00000207990 gene_biotype:miRNA transcript_biotype:miRNA	chr7	129410223	129410332	-	ENSG00000207990	ENST00000385255	NA	NA	NA	NA	NA	inter
LNCA_21_P0005429	1.0096102	A	2.4469066	A	0.369258644347696	0	lncRNA	TCONS_00013589	NA	NA	NA	NA	XLOC_006248	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006248), lincRNA [TCONS_00013589]"	chr7:130035339-130035398	hs|7q32.2	Agilent_HUMAN_G3V2	TCONS_00013589	TCONS_00013589	chr7	130035339	130035398	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49855_PI429285431	11.712046	P	11.421652	P	1.22297422633724	0	lncRNA	53607-1_{1..599}	hg19_lincRNAsTranscripts_TCONS_l2_00025991 range=chr7:66312065-66312961 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025991 range=chr7:66312065-66312961 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 66312065	 66312663	+	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90"	NA	inter
CUST_50055_PI429285431	3.267937	A	3.4046414	A	0.909594603464423	0	lncRNA	53791-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00027777 range=chr8:58106131-58126740 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027777 range=chr8:58106131-58126740 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 58106131	 58109130	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22746_PI429285431	3.3720574	P	2.9056172	P	1.38169597158951	0	lncRNA	24329-1_{1..749}	lnc-SLC3A2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC3A2-2:1	chr11	 62685398	 62686146	+	lnc-SLC3A2-2	lnc-SLC3A2-2:1	ENSG00000257002.1	AP000438.2	CHRM1	"hg19_refFlat_CHRM1:range=chr11:62677190-626785725'pad=0,hg19_refFlat_CHRM1:range=chr11:62677190-626785725'pad=0 3'pad=0 strand=- repeatMasking=none,-101.20chr11:62676151-62689012"	NA	inner
CUST_14471_PI429285431	4.0645046	P	4.439526	P	0.771093974712588	0	lncRNA	16134-1_{1..448}	lnc-C19orf12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C19orf12-2:1	chr19	 30187383	 30187830	-	lnc-C19orf12-2	lnc-C19orf12-2:1	XLOC_013290	linc-UQCRFS1-3	C19orf12	NA	chr19:30189793-30197465	inter
CUST_6822_PI429285431	0.91245514	A	0.8842773	A	1.01972337583221	0	lncRNA	6770-1_{1..577}	"transcript_id ""ENST00000453802.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453802.1"" | genecode_v17"	chr21	 26467335	 26467911	+	ENSG00000232512.1	ENST00000453802.1	AP000233.2	AP000233.2-001	NA	NA	NA	inter
CUST_30698_PI429285431	0.91412616	A	1.7459244	A	0.561828517389098	0	lncRNA	32480-1_{1..342}	n336195|X93700|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324650|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324650|2.3189400|-0.0435372	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336195|X93700|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324650|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324650|2.3189400|-0.0435372	chr2	 89442059	 89442400	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014890	3.1985645	P	3.7231357	P	0.695165697417522	0	lncRNA	XR_132810	XR_132810	XR_132810	NA	Hs.639995	LOC100507548	uncharacterized LOC100507548	NA	NP852544	NA	"PREDICTED: Homo sapiens hypothetical LOC100507548 (LOC100507548), miscRNA [XR_132810]"	chr11:134856634-134856693	hs|11q25	Agilent_HUMAN_G3V2	XR_132810	XR_132810	chr11	134856634	134856693	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17970_PI429285431	2.1381133	A	2.1345963	A	1.00244077248118	0	lncRNA	19702-1_{1..382}	lnc-SNAPC2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNAPC2-2:1	chr19	  8020661	  8021042	+	lnc-SNAPC2-2	lnc-SNAPC2-2:1	XLOC_012946	linc-CCL25-1	ELAVL1	NA	chr19:8023457-8030786	inter
CUST_51343_PI429285431	5.3111925	P	6.505572	P	0.436974349264913	0	lncRNA	54943-1_{1..1072}	hg19_lincRNAsTranscripts_TCONS_l2_00008734 range=chr15:74509890-74514264 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008734 range=chr15:74509890-74514264 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 74509890	 74510961	+	NA	NA	NA	NA	STRA6	NA	chr15:74499890-74502046	inter
CUST_24010_PI429285431	0.9302836	A	0.9279051	A	1.00165001034047	0	lncRNA	25563-1_{1..612}	lnc-STAG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STAG1-1:1	chr3	136580457	136581068	-	lnc-STAG1-1	lnc-STAG1-1:1	ENSG00000239213.1	RP11-85F14.5	NCK1	NA	chr3:136581050-136590896	inter
CUST_51865_PI429285431	8.180966	P	8.26752	P	0.941769561616185	0	lncRNA	55417-1_{1..1254}	hg19_lincRNAsTranscripts_TCONS_l2_00012650 range=chr19:52197281-52208443 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012650 range=chr19:52197281-52208443 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 52197281	 52198534	+	NA	NA	NA	NA	HAS1	NA	chr19:52216365-52218443	inter
LNCA_21_P0008090	1.0357056	A	1.106701	A	0.951980943862066	0	lncRNA	TCONS_00021855	NA	NA	NA	NA	XLOC_010450	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010450), lincRNA [TCONS_00021855]"	chr13:80488958-80489017	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00021855	TCONS_00021855	chr13	 80488958	 80489017	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19653_PI429285431	1.0812379	A	1.5687952	A	0.713231684711311	0	lncRNA	21309-1_{1..758}	lnc-WDR67-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-WDR67-2:2	chr8	123827663	123828420	+	lnc-WDR67-2	lnc-WDR67-2:2	ENSG00000253372.1	RP11-44N11.1	ZHX2	NA	chr8:123817663-123838013	inner
CUST_8627_PI429285431	1.6227578	A	2.0138662	A	0.76254352912472	0	lncRNA	10179-2_{3001..4470}	lnc-ELMOD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ELMOD3-1:1	chr2	 85522451	 85523920	+	lnc-ELMOD3-1	lnc-ELMOD3-1:1	ENSG00000250117	AC093162.2	TCF7L1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20chr2:85509451-85529567"	NA	inner
CUST_12489_PI429285431	4.2207575	P	4.055948	P	1.12101804394559	0	lncRNA	14100-1_{1..1430}	lnc-SCCPDH-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCCPDH-1:5	chr1	246955359	246956788	+	lnc-SCCPDH-1	lnc-SCCPDH-1:5	XLOC_000643	linc-VN1R5-3	LOC100130097	NA	chr1:246945359-246948062	inter
CUST_9978_PI429285431	5.164734	P	5.3969607	P	0.85131992383393	0	lncRNA	11502-1_{1..354}	lnc-ZWINT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZWINT-1:1	chr10	 57914593	 57914946	-	lnc-ZWINT-1	lnc-ZWINT-1:1	XLOC_008828	linc-PCDH15	NA	NA	NA	inter
CUST_46834_PI429285431	0.9392965	A	0.9202627	A	1.0132806393995	0	lncRNA	50971-2_{3001..6000}	"gi|237681126|ref|NR_027676.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237681126|ref|NR_027676.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant 6, non-coding RNA"	Chr17	 41199312	 41202311	-	672	NR_027676.1	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20"	NA	inter
CUST_36532_PI429285431	0.91213	A	0.914088	A	0.998643738375697	0	lncRNA	37732-1_{1..3000}	n345034|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_583|NULL|-1.3243000|-0.3165207	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345034|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_583|NULL|-1.3243000|-0.3165207	chr9	 36422447	 36425446	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10"	NA	inter
LNCA_21_P0005411	0.9918416	A	0.92985034	A	1.04390560331139	0	lncRNA	ENST00000392471	NA	NA	NA	NA	XLOC_006192	NA	ENST00000392471	NA	NA	"BROAD Institute lincRNA (XLOC_006192), lincRNA [TCONS_00013556]"	chr7:100108700-100108759	hs|7q22.1	Agilent_HUMAN_G3V2	ENST00000392471	ENST00000392471	chr7	100108700	100108759	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8987_PI429285431	1.6140499	A	1.6885102	A	0.949697328236094	0	lncRNA	10519-1_{1..2361}	lnc-MYO6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYO6-1:1	chr6	 76362140	 76364500	+	lnc-MYO6-1	lnc-MYO6-1:1	ENSG00000249080	ENST00000513306	SENP6	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr6:76352140-76372390"	NA	inner
CUST_47907_PI429285431	4.1852007	P	3.7114415	P	1.38872332483044	0	lncRNA	51799-1_{1..1939}	"gi|410171956|ref|XR_171501.1| PREDICTED: Homo sapiens uncharacterized LOC100996452 (LOC100996452), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171956|ref|XR_171501.1| PREDICTED: Homo sapiens uncharacterized LOC100996452 (LOC100996452), misc_RNA"	NA	NA	NA	NA	NA	XR_171501.1	NA	NA	NA	NA	NA	Unknown
CUST_16682_PI429285431	2.4895253	A	2.8415012	A	0.783510275259333	0	lncRNA	18386-2_{3001..3517}	lnc-TCF21-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TCF21-1:2	chr6	134175335	134175851	+	lnc-TCF21-1	lnc-TCF21-1:2	XLOC_005467	linc-TCF21	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20"	NA	inter
LNCA_21_P0013688	4.4584446	P	4.758133	P	0.812427849361982	0	lncRNA	TCONS_l2_00029647	NA	NA	NA	NA	XLOC_l2_015418	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015418), lincRNA [TCONS_l2_00029647]"	chr9:139535572-139535513	hs|9q34.3	Agilent_HUMAN_G3V2	TCONS_l2_00029647	TCONS_l2_00029647	chr9	139535513	139535572	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005150	0.9996948	A	0.92975223	A	1.04967489791816	0	lncRNA	TCONS_00012637	NA	NA	NA	NA	XLOC_005571	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005571), lincRNA [TCONS_00012637]"	chr6:998600-998541	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_00012637	TCONS_00012637	chr6	   998541	   998600	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48179_PI429285431	0.9626484	A	1.3953824	A	0.740856483425245	0	lncRNA	52043-1_{1..1769}	"gi|310113855|ref|XR_112133.1| PREDICTED: Homo sapiens growth differentiation factor 5 opposite strand (GDF5OS), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310113855|ref|XR_112133.1| PREDICTED: Homo sapiens growth differentiation factor 5 opposite strand (GDF5OS), misc_RNA"	NA	NA	NA	NA	NA	XR_112133.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_GDF5:range=chr20:34021707-340257085'pad=0,hg19_refFlat_GDF5:range=chr20:34021707-340257085'pad=0 3'pad=0 strand=- repeatMasking=none,-108.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80"	NA	Unknown
CUST_15208_PI429285431	7.689455	P	7.281962	P	1.32637893514333	0	lncRNA	16876-1_{1..519}	lnc-RFPL4B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RFPL4B-4:1	chr6	113204243	113204761	+	lnc-RFPL4B-4	lnc-RFPL4B-4:1	XLOC_005435	linc-MARCKS-3	NA	NA	NA	inter
CUST_10540_PI429285431	2.0185075	A	1.7941473	A	1.16825903932433	0	lncRNA	12068-2_{3001..3273}	lnc-YIPF4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-YIPF4-1:1	chr2	 32541713	 32541985	+	lnc-YIPF4-1	lnc-YIPF4-1:1	XLOC_001417	linc-BIRC6	YIPF4	"hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70chr2:32528713-32531658"	NA	inter
CUST_42864_PI429285431	0.9291809	A	0.932057	A	0.998008425216098	0	lncRNA	45915-1_{1..72}	ENST00000515890 ncrna:snoRNA chromosome:GRCh37:9:8888136:8888207:1 gene:ENSG00000251699 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515890 ncrna:snoRNA chromosome:GRCh37:9:8888136:8888207:1 gene:ENSG00000251699 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	  8888136	  8888207	+	ENSG00000251699	ENST00000515890	NA	NA	PTPRD	NA	chr9:8878136-8898207	inner
CUST_1656_PI429285431	2.5522952	A	2.7849748	A	0.851052714014981	0	lncRNA	1641-1_{1..740}	"transcript_id ""ENST00000594446.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594446.1"" | genecode_v17"	chr3	195435025	195435764	+	ENSG00000242086.3	ENST00000594446.1	AC069513.3	AC069513.3-023	MUC20	NA	chr3:195447753-195464540	inner
CUST_1998_PI429285431	1.50127	A	0.9221654	A	1.49392176728722	0	lncRNA	1989-1_{1..401}	"transcript_id ""ENST00000510211.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510211.1"" | genecode_v17"	chr4	182741172	182741572	-	ENSG00000251336.1	ENST00000510211.1	RP11-540E16.2	RP11-540E16.2-001	NA	NA	NA	inter
CUST_16185_PI429285431	7.3608575	P	7.869432	P	0.702916633636884	0	lncRNA	17890-1_{1..281}	lnc-ADAM2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAM2-4:1	chr8	 39274731	 39275011	-	lnc-ADAM2-4	lnc-ADAM2-4:1	XLOC_007062	linc-TM2D2-2	NA	NA	NA	inter
LNCA_21_P0005535	1.2853738	A	2.4244432	A	0.454052366412238	0	lncRNA	TCONS_00013984	NA	NA	NA	NA	XLOC_006625	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006625), lincRNA [TCONS_00013984]"	chr7:141212611-141212552	hs|7q34	Agilent_HUMAN_G3V2	TCONS_00013984	TCONS_00013984	chr7	141212552	141212611	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_254_PI429285431	2.9622715	A	3.4959018	P	0.69081422703659	0	lncRNA	246-1_{1..384}	"transcript_id ""ENST00000442027.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442027.1"" | genecode_v17"	chr1	 61714617	 61715000	-	ENSG00000237853.2	ENST00000442027.1	RP5-833A20.1	RP5-833A20.1-001	NFIA	NA	chr1:61704617-61729182	inner
CUST_6621_PI429285431	1.6054561	A	2.1824687	A	0.670350441155471	0	lncRNA	6568-1_{1..2517}	"transcript_id ""ENST00000594816.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594816.1"" | genecode_v17"	chr19	 58939999	 58942515	-	ENSG00000268912.1	ENST00000594816.1	CTD-2619J13.17	CTD-2619J13.17-001	ZNF132	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20chr19:58944181-58951589"	NA	inter
CUST_22559_PI429285431	0.90515196	A	0.89938134	A	1.00400789921547	0	lncRNA	24146-1_{1..859}	lnc-CHMP4C-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHMP4C-5:2	chr8	 82445157	 82446015	+	lnc-CHMP4C-5	lnc-CHMP4C-5:2	ENSG00000253374.1	RP11-257P3.3	FABP12	"hg19_refFlat_FTH1:range=chr11:61732199-617348975'pad=0,hg19_refFlat_FTH1:range=chr11:61732199-617348975'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60chr8:82435157-82443550"	NA	inter
LNCA_21_P0011019	0.9894886	A	0.92471695	A	1.04591937840515	0	lncRNA	TCONS_l2_00005193	NA	NA	NA	NA	XLOC_l2_002775	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002775), lincRNA [TCONS_l2_00005193]"	chr11:111271333-111271274	hs|11q23.1	Agilent_HUMAN_G3V2	TCONS_l2_00005193	TCONS_l2_00005193	chr11	111271274	111271333	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8769_PI429285431	0.908852	A	0.9048463	A	1.00278039781736	0	lncRNA	10312-1_{1..2153}	lnc-IRF2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-IRF2-3:1	chr4	185274466	185276618	-	lnc-IRF2-3	lnc-IRF2-3:1	ENSG00000180712	XLOC_004204	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.56;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-23.30"	NA	inter
CUST_16265_PI429285431	1.9765975	A	1.5384377	A	1.35487504179916	0	lncRNA	17968-1_{1..532}	lnc-CLEC4D-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLEC4D-1:2	chr12	  8718512	  8719043	+	lnc-CLEC4D-1	lnc-CLEC4D-1:2	XLOC_009643	linc-RIMKLB	NA	NA	NA	inter
CUST_52092_PI429285431	4.789587	P	4.980219	P	0.87622179160842	0	lncRNA	55618-1_{1..366}	hg19_lincRNAsTranscripts_TCONS_l2_00017859 range=chr22:17126460-17127459 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017859 range=chr22:17126460-17127459 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 17126460	 17126825	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21496_PI429285431	0.9240851	A	0.91892314	A	1.00358440669621	0	lncRNA	23114-1_{1..445}	lnc-FPGT-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FPGT-1:2	chr1	 74934820	 74935264	+	lnc-FPGT-1	lnc-FPGT-1:2	ENSG00000233894.1	RP4-650F12.2	FPGT-TNNI3K	NA	chr1:74924820-74945227	inner
CUST_51139_PI429285431	4.2243323	P	4.5389214	P	0.804079971508038	0	lncRNA	54767-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00007731 range=chr14:53651868-53785175 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007731 range=chr14:53651868-53785175 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 53651868	 53654867	+	NA	NA	NA	NA	NA	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10"	NA	inter
CUST_3397_PI429285431	1.0516897	A	0.94399816	A	1.0775027415141	0	lncRNA	3370-1_{1..891}	"transcript_id ""ENST00000444791.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444791.2"" | genecode_v17"	chr9	 38804004	 38804894	+	ENSG00000228467.2	ENST00000444791.2	RP11-402N8.1	RP11-402N8.1-001	NA	NA	NA	inter
CUST_23581_PI429285431	1.414746	A	0.9075814	A	1.42125418770111	0	lncRNA	25148-1_{1..478}	lnc-C5orf42-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C5orf42-3:3	chr5	 36725216	 36725693	-	lnc-C5orf42-3	lnc-C5orf42-3:3	ENSG00000250155.1	CTD-2353F22.1	NA	NA	NA	inter
CUST_2373_PI429285431	3.2911382	P	3.4157767	P	0.917233848179206	0	lncRNA	2366-1_{1..771}	"transcript_id ""ENST00000523722.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523722.1"" | genecode_v17"	chr5	135236042	135236812	-	ENSG00000253927.1	ENST00000523722.1	GS1-39E22.1	GS1-39E22.1-001	IL9	NA	chr5:135227935-135231516	inter
CUST_25218_PI429285431	0.9077806	A	0.89844644	A	1.00649092200396	0	lncRNA	26749-1_{1..356}	lnc-SLC37A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC37A2-1:1	chr11	125061062	125061417	+	lnc-SLC37A2-1	lnc-SLC37A2-1:1	ENSG00000259290.1	RP11-687M24.7	PKNOX2	NA	chr11:125051062-125071300	inner
CUST_38378_PI429285431	7.940502	P	6.2049217	P	3.33013416037063	0	lncRNA	39417-2_{3001..3412}	n382231|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ygz.1||-1.1538500|-0.2659347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382231|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ygz.1||-1.1538500|-0.2659347	chr14	100748712	100749123	+	NA	NA	NA	NA	SLC25A29	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.34;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-24.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60chr14:100757453-100759124"	NA	inter
CUST_51486_PI429285431	0.9175525	A	0.9065472	A	1.00765746221483	0	lncRNA	55062-1_{1..331}	hg19_lincRNAsTranscripts_TCONS_l2_00009764 range=chr16:55762064-55767404 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009764 range=chr16:55762064-55767404 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 55762064	 55762394	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28489_PI429285431	0.90335894	A	0.9008118	A	1.00176710239802	0	lncRNA	30156-1_{1..852}	n325831|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280451|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280451|-1.2440800|-0.4063088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325831|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280451|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280451|-1.2440800|-0.4063088	chr11	 60139799	 60140650	+	NA	NA	NA	NA	MS4A7	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr11:60145958-60163427"	NA	inner
CUST_35693_PI429285431	10.308043	P	10.292373	P	1.01092081782109	0	lncRNA	37112-1_{1..219}	n342853|AF091236|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5357|NULL|2.0213600|-0.0209834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342853|AF091236|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5357|NULL|2.0213600|-0.0209834	chr9	 31254041	 31254259	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007776	2.3072276	A	2.874167	A	0.67504734714008	0	lncRNA	TCONS_00020964	NA	NA	NA	NA	XLOC_010234	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010234), lincRNA [TCONS_00020964]"	chr12:124726874-124723833	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00020964	TCONS_00020964	chr12	124723833	124726874	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40675_PI429285431	1.9691548	A	1.5356405	A	1.35051934001004	0	lncRNA	41410-1_{1..1058}	n410231|NR_037170_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037170_8||0.2388940|-0.2443468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410231|NR_037170_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037170_8||0.2388940|-0.2443468	chr6	  3591245	  3592302	-	NA	NA	NA	NA	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70"	NA	inter
CUST_6990_PI429285431	0.9677044	A	1.8098471	A	0.557814483830181	0	lncRNA	6938-1_{1..1078}	"transcript_id ""ENST00000566575.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566575.1"" | genecode_v17"	chr22	 42318027	 42319104	-	ENSG00000260655.1	ENST00000566575.1	CTA-250D10.23	CTA-250D10.23-001	TNFRSF13C	NA	chr22:42321036-42322821	inter
CUST_5456_PI429285431	6.7474074	P	7.4348707	P	0.620944701738575	0	lncRNA	5390-1_{1..579}	"transcript_id ""ENST00000565747.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565747.1"" | genecode_v17"	chr16	 23464328	 23464906	+	ENSG00000260136.1	ENST00000565747.1	CTD-2270L9.4	CTD-2270L9.4-003	COG7	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30chr16:23454328-23464512"	NA	inner
CUST_43143_PI429285431	1.2890224	A	0.8960767	A	1.31307170324326	0	lncRNA	47957-1_{1..661}	ENST00000436207 havana:sense_intronic chromosome:GRCh37:1:42801057:42804047:-1 gene:ENSG00000227527 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,ensembl.GRCh37.72,"	>ENST00000436207 havana:sense_intronic chromosome:GRCh37:1:42801057:42804047:-1 gene:ENSG00000227527 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr1	 42801057	 42801717	-	ENSG00000227527	ENST00000436207	NA	NA	FOXJ3	NA	chr1:42791057-42801548	inner
CUST_50888_PI429285431	1.050191	A	0.9473196	A	1.07390874049502	0	lncRNA	54531-1_{1..219}	hg19_lincRNAsTranscripts_TCONS_l2_00006291 range=chr12:58997062-59175494 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006291 range=chr12:58997062-59175494 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 58997062	 58997280	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28024_PI429285431	0.9001977	A	1.0588212	A	0.895879437165642	0	lncRNA	29639-1_{1..1977}	n325286|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327469|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327469|-0.1307790|-0.2494837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325286|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327469|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327469|-0.1307790|-0.2494837	chr2	 64926767	 64928743	-	NA	NA	NA	NA	NA	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0,hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0 3'pad=0 strand=- repeatMasking=none,-62.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-21.80"	NA	inter
CUST_13824_PI429285431	0.9456798	A	1.5073488	A	0.677517915010524	0	lncRNA	15467-1_{1..533}	lnc-CNIH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CNIH-1:1	chr14	 54859045	 54859577	-	lnc-CNIH-1	lnc-CNIH-1:1	XLOC_011030	linc-BMP4-2	CDKN3	NA	chr14:54863673-54869274	inter
LNCA_21_P0003349	0.9292665	A	1.3059824	A	0.770188827285821	0	lncRNA	ENST00000515263	NA	NA	NA	NA	XLOC_003500	NA	ENST00000515263	NA	NA	"BROAD Institute lincRNA (XLOC_003500), lincRNA [TCONS_00007506]"	chr4:33439440-33439499	hs|4p15.1	Agilent_HUMAN_G3V2	ENST00000515263	ENST00000515263	chr4	 33439440	 33439499	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41376_PI429285431	8.279771	P	8.613048	P	0.793731518444723	0	lncRNA	42465-1_{1..73}	ENST00000585005 ncrna:miRNA chromosome:GRCh37:2:161264321:161264393:-1 gene:ENSG00000263948 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585005 ncrna:miRNA chromosome:GRCh37:2:161264321:161264393:-1 gene:ENSG00000263948 gene_biotype:miRNA transcript_biotype:miRNA	chr2	161264321	161264393	-	ENSG00000263948	ENST00000585005	NA	NA	RBMS1	NA	chr2:161254321-161274393	inner
CUST_17093_PI429285431	1.3330766	A	1.0649427	A	1.20424914530717	0	lncRNA	18801-1_{1..592}	lnc-RTN4IP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RTN4IP1-1:1	chr6	106949790	106950381	-	lnc-RTN4IP1-1	lnc-RTN4IP1-1:1	XLOC_005798	linc-ATG5-2	AIM1	NA	chr6:106959730-106960059	inter
CUST_28939_PI429285431	0.90888625	A	0.90848196	A	1.00028027174242	0	lncRNA	30659-1_{1..3000}	n326368|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098960|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098960|0.2771360|-0.2274414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326368|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098960|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098960|0.2771360|-0.2274414	chr1	154924112	154927111	-	NA	NA	NA	NA	PBXIP1	NA	chr1:154916556-154928567	inner
CUST_7436_PI429285431	1.0274128	A	0.9103442	A	1.08452897685772	0	lncRNA	9079-1_{1..856}	lnc-C12orf61-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C12orf61-1:1	chr12	 62878549	 62879404	-	lnc-C12orf61-1	lnc-C12orf61-1:1	ENSG00000246324	ENST00000438625	MON2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90chr12:62868549-62888722"	NA	inner
CUST_25531_PI429285431	4.2805376	P	4.2621064	P	1.01285749009057	0	lncRNA	27061-1_{1..586}	lnc-CALB2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALB2-4:2	chr16	 71124086	 71124671	+	lnc-CALB2-4	lnc-CALB2-4:2	ENSG00000259833.1	RP11-23E19.1	HYDIN	NA	chr16:71114086-71134393	inner
CUST_11195_PI429285431	2.2260454	A	2.2539253	A	0.980860654273658	0	lncRNA	12753-1_{1..290}	lnc-AC007663.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC007663.1-5:1	chr22	 20420432	 20420721	+	lnc-AC007663.1-5	lnc-AC007663.1-5:1	XLOC_014158	linc-ZNF74-1	NA	NA	NA	inter
CUST_9169_PI429285431	1.3315938	A	1.2348847	A	1.06933144987898	0	lncRNA	10686-1_{1..1515}	lnc-TMEM183A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM183A-1:1	chr1	202934889	202936403	+	lnc-TMEM183A-1	lnc-TMEM183A-1:1	ENSG00000245250	ENST00000501099	CYB5R1	"hg19_refFlat_CYB5R1:range=chr1:202931655-2029363335'pad=0,hg19_refFlat_CYB5R1:range=chr1:202931655-2029363335'pad=0 3'pad=0 strand=- repeatMasking=none,-104.00chr1:202931001-202936404"	NA	inner
CUST_10922_PI429285431	2.4918642	A	2.680923	A	0.877177796821233	0	lncRNA	12463-4_{9001..10369}	lnc-CRYBA4-1:28	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,ncbi,"	>lnc-CRYBA4-1:28	chr22	 27073121	 27074489	+	lnc-CRYBA4-1	lnc-CRYBA4-1:28	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
CUST_49963_PI429285431	1.243793	A	1.2146871	A	1.02037955673277	0	lncRNA	53712-1_{1..235}	hg19_lincRNAsTranscripts_TCONS_l2_00026248 range=chr7:141998745-141999096 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026248 range=chr7:141998745-141999096 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	141998745	141998979	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42370_PI429285431	3.1669762	A	3.9861643	P	0.56676080673971	0	lncRNA	45048-1_{1..74}	ENST00000364377 ncrna:snoRNA chromosome:GRCh37:14:101436216:101436289:1 gene:ENSG00000201247 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364377 ncrna:snoRNA chromosome:GRCh37:14:101436216:101436289:1 gene:ENSG00000201247 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101436216	101436289	+	ENSG00000201247	ENST00000364377	NA	NA	NA	NA	NA	inter
CUST_46929_PI429285431	2.7660685	A	3.115841	P	0.784707829490269	0	lncRNA	51039-2_{3001..4368}	"gi|258547106|ref|NR_028439.1| Homo sapiens small integral membrane protein 5 (SMIM5), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|258547106|ref|NR_028439.1| Homo sapiens small integral membrane protein 5 (SMIM5), transcript variant 2, non-coding RNA"	Chr17	 73635675	 73637042	+	643008	NR_028439.1	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40"	NA	inter
CUST_41131_PI429285431	1.8678116	A	1.4958932	A	1.29407245862649	0	lncRNA	41913-1_{1..76}	ENST00000581095 ncrna:miRNA chromosome:GRCh37:2:189997762:189997837:-1 gene:ENSG00000264725 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581095 ncrna:miRNA chromosome:GRCh37:2:189997762:189997837:-1 gene:ENSG00000264725 gene_biotype:miRNA transcript_biotype:miRNA	chr2	189997762	189997837	-	ENSG00000264725	ENST00000581095	NA	NA	COL5A2	NA	chr2:189987762-190007837	inner
CUST_4755_PI429285431	3.0624518	P	2.9792023	P	1.05940153197798	0	lncRNA	4700-1_{1..665}	"transcript_id ""ENST00000549742.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549742.1"" | genecode_v17"	chr14	 29061429	 29062093	-	ENSG00000258175.1	ENST00000549742.1	RP11-412H8.2	RP11-412H8.2-001	NA	NA	NA	inter
CUST_35374_PI429285431	2.657161	A	3.2487423	P	0.663615137219687	0	lncRNA	36782-1_{1..1712}	n342421|AF090102|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4914|NULL|-1.2044400|-0.3187379	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342421|AF090102|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4914|NULL|-1.2044400|-0.3187379	chr2	 71409867	 71411578	+	NA	NA	NA	NA	PAIP2B	NA	chr2:71409868-71421508	inner
CUST_40655_PI429285431	10.756031	P	10.339845	P	1.33439519599007	0	lncRNA	41394-1_{1..3000}	n410210|NR_037162|lncRNA|Homosapiens||RefGeneNoncode|NR_037162||8.5780500|-0.1415761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410210|NR_037162|lncRNA|Homosapiens||RefGeneNoncode|NR_037162||8.5780500|-0.1415761	chr3	  9851643	  9854642	+	NA	NA	NA	NA	ARPC4	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20chr3:9841643-9848789"	NA	inter
CUST_26331_PI429285431	0.90658206	A	1.6428872	A	0.600274738047551	0	lncRNA	27838-1_{1..597}	lnc-TARBP1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TARBP1-5:1	chr1	234086331	234086927	-	lnc-TARBP1-5	lnc-TARBP1-5:1	ENSG00000234453.1	RP11-488L4.1	SLC35F3	NA	chr1:234076331-234096853	inner
CUST_20050_PI429285431	0.91785866	A	0.9034107	A	1.01006487628807	0	lncRNA	21701-1_{1..660}	lnc-GOLGA7B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GOLGA7B-1:1	chr10	 99630823	 99631482	+	lnc-GOLGA7B-1	lnc-GOLGA7B-1:1	ENSG00000239666.1	RP11-459F3.6	GOLGA7B	NA	chr10:99620823-99627782	inner
CUST_15862_PI429285431	0.92533946	A	0.9135006	A	1.00823983453063	0	lncRNA	17551-2_{3001..3991}	lnc-C6orf70-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C6orf70-5:1	chr6	170367719	170368709	+	lnc-C6orf70-5	lnc-C6orf70-5:1	XLOC_005559	linc-FAM120B-6	NA	NA	NA	inter
LNCA_21_P0007354	4.334433	P	4.028619	P	1.2361158839427	0	lncRNA	AK124475	NA	AK124475	NA	Hs.659259	XLOC_009445	NA	NA	THC2504190	NA	"BROAD Institute lincRNA (XLOC_009445), lincRNA [TCONS_00019642]"	chr11:58902141-58902082	hs|11q12.1	Agilent_HUMAN_G3V2	AK124475	AK124475	chr11	 58902082	 58902141	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23467_PI429285431	5.0432286	P	5.3783584	P	0.792712812630497	0	lncRNA	25034-1_{1..289}	lnc-TELO2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TELO2-3:1	chr16	  1496264	  1496552	+	lnc-TELO2-3	lnc-TELO2-3:1	ENSG00000261641.1	LA16c-390E6.5	CLCN7	NA	chr16:1494935-1506365	inner
CUST_14442_PI429285431	0.90475154	A	0.9097472	A	0.996543260683356	0	lncRNA	16104-1_{1..483}	lnc-NUFIP1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUFIP1-1:3	chr13	 45464165	 45464647	-	lnc-NUFIP1-1	lnc-NUFIP1-1:3	XLOC_010590	linc-TSC22D1-1	NA	NA	NA	inter
CUST_26415_PI429285431	0.9583527	A	0.98076874	A	0.984582471059071	0	lncRNA	27922-1_{1..804}	lnc-MAT2B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAT2B-3:1	chr5	164192367	164193170	+	lnc-MAT2B-3	lnc-MAT2B-3:1	ENSG00000241956.5	CTC-340A15.2	NA	NA	NA	inter
CUST_41063_PI429285431	9.132021	P	9.481799	P	0.784704837946864	0	lncRNA	41723-1_{1..76}	ENST00000584548 ncrna:miRNA chromosome:GRCh37:10:50193557:50193632:-1 gene:ENSG00000264800 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584548 ncrna:miRNA chromosome:GRCh37:10:50193557:50193632:-1 gene:ENSG00000264800 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 50193557	 50193632	-	ENSG00000264800	ENST00000584548	NA	NA	WDFY4	NA	chr10:50183557-50191001	inter
CUST_39406_PI429285431	11.726764	P	11.3012705	P	1.34303183260709	0	lncRNA	40366-1_{1..808}	n386625|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010qfy.1||-1.2909300|-0.2087820	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386625|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010qfy.1||-1.2909300|-0.2087820	chr10	 47242686	 47243493	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11520_PI429285431	4.463025	P	4.378667	P	1.06021583980966	0	lncRNA	13090-1_{1..427}	lnc-ZEB1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZEB1-2:1	chr10	 31429255	 31429681	+	lnc-ZEB1-2	lnc-ZEB1-2:1	XLOC_008440	linc-ZEB1-1	NA	NA	NA	inter
CUST_17152_PI429285431	7.0713534	P	7.0892854	P	0.987647412129603	0	lncRNA	18861-1_{1..761}	lnc-OXNAD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OXNAD1-1:1	chr3	 16572994	 16573754	+	lnc-OXNAD1-1	lnc-OXNAD1-1:1	XLOC_002587	linc-PLCL2-2	NA	NA	NA	inter
CUST_32759_PI429285431	0.9257909	A	0.91786957	A	1.00550574878694	0	lncRNA	34396-1_{1..399}	n339395|AY562502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1827|NULL|-0.9794160|-0.1804492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339395|AY562502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1827|NULL|-0.9794160|-0.1804492	chr3	 71315081	 71315479	-	NA	NA	NA	NA	FOXP1	NA	chr3:71305081-71325472	inner
CUST_45927_PI429285431	4.3785205	P	3.3745666	P	2.00548878721906	0	lncRNA	50233-2_{3001..3711}	"gi|349501083|ref|NR_045205.1| Homo sapiens checkpoint kinase 1 (CHEK1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|349501083|ref|NR_045205.1| Homo sapiens checkpoint kinase 1 (CHEK1), transcript variant 6, non-coding RNA"	Chr11	125499124	125499834	+	1111	NR_045205.1	NA	NA	NA	"hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30"	NA	inter
CUST_45952_PI429285431	7.7945905	P	6.529006	P	2.4042459688573	0	lncRNA	50247-4_{9001..9339}	"gi|242247112|ref|NR_027946.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant alpha, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|242247112|ref|NR_027946.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant alpha, non-coding RNA"	Chr12	  1109404	  1109742	+	23085	NR_027946.1	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10"	NA	inter
CUST_29159_PI429285431	0.90968114	A	0.914307	A	0.996798733199865	0	lncRNA	30902-1_{1..777}	n326670|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099620|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099620|-1.2923300|-0.3473319	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326670|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099620|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099620|-1.2923300|-0.3473319	chr1	 25452384	 25453160	-	NA	NA	NA	NA	SYF2	NA	chr1:25451384-25476963	inter
CUST_12151_PI429285431	0.9225614	A	1.0972819	A	0.885939139574989	0	lncRNA	13751-1_{1..329}	lnc-PCSK9-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCSK9-4:1	chr1	 56313102	 56313430	+	lnc-PCSK9-4	lnc-PCSK9-4:1	XLOC_000207	linc-PRKAA2-8	NA	NA	NA	inter
LNCA_21_P0006719	1.394215	A	0.9280704	A	1.38141289895249	0	lncRNA	ENST00000418524	NA	NA	NA	NA	XLOC_008685	NA	ENST00000418524	THC2775743	NA	"BROAD Institute lincRNA (XLOC_008685), lincRNA [TCONS_00017897]"	chr10:2215018-2214959	hs|10p15.3	Agilent_HUMAN_G3V2	ENST00000418524	ENST00000418524	chr10	  2214959	  2215018	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_160_PI429285431	0.92516863	A	0.9243978	A	1.00053444140413	0	lncRNA	151-1_{1..708}	"transcript_id ""ENST00000441033.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441033.1"" | genecode_v17"	chr1	  9561151	  9561858	-	ENSG00000235263.1	ENST00000441033.1	RP13-392I16.1	RP13-392I16.1-001	NA	NA	NA	inter
LNCA_21_P0010825	3.0635383	P	2.894204	A	1.12453947086745	0	lncRNA	ENST00000427229	NA	BC043208	NA	Hs.666134	XLOC_l2_001583	NA	ENST00000427229	THC2506408	NA	"BROAD Institute lincRNA (XLOC_l2_001583), lincRNA [TCONS_l2_00003035]"	chr10:45643355-45643414	hs|10q11.21	Agilent_HUMAN_G3V2	ENST00000427229	ENST00000427229	chr10	 45643355	 45643414	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40455_PI429285431	4.546075	P	4.662961	P	0.922175984253604	0	lncRNA	41228-1_{1..1595}	n409367|NR_033740|lncRNA|Homosapiens||RefGeneNoncode|NR_033740||7.1163400|-0.1075019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409367|NR_033740|lncRNA|Homosapiens||RefGeneNoncode|NR_033740||7.1163400|-0.1075019	chr16	 55758836	 55760430	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4049_PI429285431	1.1649715	A	0.91148067	A	1.1920880747329	0	lncRNA	4011-1_{1..1033}	"transcript_id ""ENST00000577699.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577699.2"" | genecode_v17"	chr11	 91527528	 91528560	+	ENSG00000255332.3	ENST00000577699.2	RP11-201M22.1	RP11-201M22.1-002	NA	NA	NA	inter
CUST_5304_PI429285431	0.9245688	A	1.1317885	A	0.866204936825802	0	lncRNA	5244-1_{1..2140}	"transcript_id ""ENST00000554333.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554333.1"" | genecode_v17"	chr15	 92006567	 92008706	+	ENSG00000258551.1	ENST00000554333.1	RP11-661P17.1	RP11-661P17.1-001	NA	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-55.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50"	NA	inter
CUST_9892_PI429285431	1.4151362	A	1.5038309	A	0.940373181190632	0	lncRNA	11416-1_{1..708}	lnc-AC008060.7.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC008060.7.1-3:2	chr7	155211091	155211798	+	lnc-AC008060.7.1-3	lnc-AC008060.7.1-3:2	XLOC_006306	linc-EN2-1	NA	NA	NA	inter
LNCA_21_P0002329	1.942991	A	0.94766295	A	1.99353377765269	0	lncRNA	TCONS_00003965	NA	NA	NA	NA	XLOC_001780	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001780), lincRNA [TCONS_00003965]"	chr2:186084576-186084635	hs|2q32.1	Agilent_HUMAN_G3V2	TCONS_00003965	TCONS_00003965	chr2	186084576	186084635	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4804_PI429285431	0.91553503	A	1.0247542	A	0.927089694989033	0	lncRNA	4748-1_{1..276}	"transcript_id ""ENST00000556923.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556923.1"" | genecode_v17"	chr14	 48236803	 48237078	-	ENSG00000259129.1	ENST00000556923.1	LINC00648	LINC00648-004	NA	NA	NA	inter
CUST_17469_PI429285431	0.9307996	A	1.0184963	A	0.941023919627558	0	lncRNA	19195-1_{1..252}	lnc-MED13L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MED13L-1:1	chr12	116796735	116796986	-	lnc-MED13L-1	lnc-MED13L-1:1	XLOC_010210	linc-MED13L-1	NA	NA	NA	inter
CUST_15808_PI429285431	2.3814502	A	2.3625948	A	1.01315534743919	0	lncRNA	17498-1_{1..226}	lnc-INSIG2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INSIG2-1:4	chr2	118815208	118815433	+	lnc-INSIG2-1	lnc-INSIG2-1:4	XLOC_001637	linc-INSIG2-1	NA	NA	NA	inter
LNCA_21_P0006547	7.985047	P	7.8718596	P	1.08161525161755	0	lncRNA	TCONS_00017365	NA	NA	NA	NA	XLOC_008216	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008216), lincRNA [TCONS_00017365]"	chrX:117956681-117956470	hs|Xq24	Agilent_HUMAN_G3V2	TCONS_00017365	TCONS_00017365	chrX	117956470	117956681	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014304	2.8852644	A	3.106935	P	0.85757181737946	0	lncRNA	XR_109232	XR_109232	XR_109232	NA	Hs.659224	LOC100507452	uncharacterized LOC100507452	NA	THC2627691	NA	"PREDICTED: Homo sapiens hypothetical LOC100507452, transcript variant 1 (LOC100507452), miscRNA [XR_109232]"	chr15:101454094-101454035	hs|15q26.3	Agilent_HUMAN_G3V2	XR_109232	XR_109232	chr15	101454035	101454094	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41932_PI429285431	4.4720745	P	5.5422173	P	0.476271854625567	0	lncRNA	43681-1_{1..115}	ENST00000390208 ncrna:miRNA chromosome:GRCh37:12:9280467:9280581:1 gene:ENSG00000211542 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390208 ncrna:miRNA chromosome:GRCh37:12:9280467:9280581:1 gene:ENSG00000211542 gene_biotype:miRNA transcript_biotype:miRNA	chr12	  9280467	  9280581	+	ENSG00000211542	ENST00000390208	NA	NA	NA	NA	NA	inter
CUST_2913_PI429285431	0.9561485	A	0.95963806	A	0.997584144212664	0	lncRNA	2894-1_{1..626}	"transcript_id ""ENST00000458082.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458082.1"" | genecode_v17"	chr7	116213539	116214164	-	ENSG00000231210.2	ENST00000458082.1	AC006159.3	AC006159.3-003	NA	NA	NA	inter
CUST_21404_PI429285431	1.1194568	A	0.9202928	A	1.14803291038479	0	lncRNA	23025-1_{1..411}	lnc-DTL-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DTL-2:3	chr1	212013001	212013411	+	lnc-DTL-2	lnc-DTL-2:3	ENSG00000229258.1	RP11-552D8.1	LPGAT1	NA	chr1:212003001-212004114	inter
CUST_4066_PI429285431	2.4720411	A	1.9333534	A	1.45265056046392	0	lncRNA	4028-1_{1..542}	"transcript_id ""ENST00000538641.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000538641.1"" | genecode_v17"	chr11	104410659	104411200	-	ENSG00000256422.1	ENST00000538641.1	RP11-886D15.1	RP11-886D15.1-001	NA	NA	NA	inter
CUST_1995_PI429285431	2.614014	A	2.6014745	A	1.00872960173645	0	lncRNA	1986-1_{1..539}	"transcript_id ""ENST00000512036.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512036.1"" | genecode_v17"	chr4	180310288	180310826	-	ENSG00000250993.1	ENST00000512036.1	RP11-404J23.1	RP11-404J23.1-001	NA	NA	NA	inter
CUST_20400_PI429285431	4.0239396	P	4.3747506	P	0.784143173880292	0	lncRNA	22041-1_{1..551}	lnc-CALB2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALB2-4:1	chr16	 71127494	 71128044	+	lnc-CALB2-4	lnc-CALB2-4:1	ENSG00000259833.1	RP11-23E19.1	HYDIN	NA	chr16:71117494-71137570	inner
CUST_3661_PI429285431	7.230616	P	6.8921237	P	1.2644344958654	0	lncRNA	3630-1_{1..444}	"transcript_id ""ENST00000412789.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412789.1"" | genecode_v17"	chr10	 38265753	 38266196	+	ENSG00000226447.1	ENST00000412789.1	RP11-393J16.4	RP11-393J16.4-001	ZNF25	NA	chr10:38255753-38265453	inter
CUST_17730_PI429285431	5.8693686	P	5.799315	P	1.04975568414491	0	lncRNA	19462-1_{1..1792}	lnc-FAM70B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM70B-2:2	chr13	114568810	114570601	+	lnc-FAM70B-2	lnc-FAM70B-2:2	XLOC_010514	linc-CDC16-5	GAS6	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00chr13:114558810-114567046"	NA	inter
LNCA_33_P3873533	1.0221319	A	1.5570319	A	0.690206516510386	0	lncRNA	XR_108845	XR_108845	XR_108845	   613126	Hs.662663	LOC613126	uncharacterized LOC613126	ENST00000453068	THC2496630	NA	"PREDICTED: Homo sapiens hypothetical LOC613126 (LOC613126), miscRNA [XR_108845]"	chr7:91809956-91810015	hs|7q21.2	Agilent_HUMAN_G3V2	XR_108845	XR_108845	chr7	 91809956	 91810015	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43945_PI429285431	1.10975	A	1.3675752	A	0.836347727445113	0	lncRNA	48655-1_{1..869}	"gi|300796587|ref|NR_034128.1| Homo sapiens uncharacterized LOC440900 (LOC440900), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300796587|ref|NR_034128.1| Homo sapiens uncharacterized LOC440900 (LOC440900), non-coding RNA"	Chr2	114737146	114738014	+	440900	NR_034128.1	NA	NA	NA	NA	NA	inter
CUST_7792_PI429285431	3.6552606	P	3.7681854	P	0.924711477136231	0	lncRNA	9417-1_{1..1197}	lnc-GLUD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLUD1-1:1	chr10	 88857289	 88858485	-	lnc-GLUD1-1	lnc-GLUD1-1:1	ENSG00000249292	ENST00000513247	FAM35A	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr10:88854953-88867348"	NA	inner
CUST_5437_PI429285431	12.712523	P	12.384716	P	1.25510407548394	0	lncRNA	5371-1_{1..2118}	"transcript_id ""ENST00000552015.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552015.1"" | genecode_v17"	chr16	 15248760	 15250877	+	ENSG00000257391.1	ENST00000552015.1	MIR3180-4	MIR3180-4-001	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.62;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90"	NA	inter
CUST_40586_PI429285431	5.8150225	P	6.5248837	P	0.611378956069853	0	lncRNA	41336-2_{3001..3377}	n410043|NR_036481|lncRNA|Homosapiens||RefGeneNoncode|NR_036481||7.0945900|-0.1405492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410043|NR_036481|lncRNA|Homosapiens||RefGeneNoncode|NR_036481||7.0945900|-0.1405492	chr3	 13977552	 13977928	+	NA	NA	NA	NA	NA	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00"	NA	inter
CUST_3600_PI429285431	0.9071062	A	1.1197629	A	0.862946664681001	0	lncRNA	3570-1_{1..1745}	"transcript_id ""ENST00000417883.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000417883.2"" | genecode_v17"	chr10	  4697619	  4699363	+	ENSG00000225269.2	ENST00000417883.2	LINC00705	LINC00705-001	NA	NA	NA	inter
CUST_11485_PI429285431	6.2903466	P	6.627584	P	0.791555602193566	0	lncRNA	13053-1_{1..822}	lnc-ARHGEF9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGEF9-1:1	chrX	 62780712	 62781533	-	lnc-ARHGEF9-1	lnc-ARHGEF9-1:1	XLOC_008174	linc-SPIN4	NA	NA	NA	inter
CUST_11084_PI429285431	1.6888653	A	1.7548072	A	0.955321408169356	0	lncRNA	12637-1_{1..609}	lnc-POP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POP1-1:1	chr8	 99192050	 99192658	+	lnc-POP1-1	lnc-POP1-1:1	XLOC_006879	linc-KCNS2	NA	NA	NA	inter
CUST_40966_PI429285431	5.3109617	P	3.7094696	P	3.03456999916721	0	lncRNA	41639-2_{3001..5454}	n411020|NR_038843|lncRNA|Homosapiens||RefGeneNoncode|NR_038843||10.2222000|-0.3394568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n411020|NR_038843|lncRNA|Homosapiens||RefGeneNoncode|NR_038843||10.2222000|-0.3394568	chr15	 23602894	 23605347	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17503_PI429285431	1.2263995	A	1.011346	A	1.16074695799936	0	lncRNA	19228-1_{1..894}	lnc-TMEM17-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM17-2:3	chr2	 62889743	 62890636	-	lnc-TMEM17-2	lnc-TMEM17-2:3	XLOC_002117	linc-TMEM17	NA	NA	NA	inter
CUST_16513_PI429285431	2.836815	A	3.2262182	P	0.763445353788443	0	lncRNA	18213-1_{1..1090}	lnc-SLFN5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLFN5-1:1	chr17	 33651673	 33652762	+	lnc-SLFN5-1	lnc-SLFN5-1:1	XLOC_012177	linc-AP2B1-2	NA	NA	NA	inter
CUST_19167_PI429285431	6.3901033	P	6.5852394	P	0.873490489268093	0	lncRNA	20836-1_{1..533}	lnc-SMUG1-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMUG1-6:3	chr12	 54378494	 54379026	-	lnc-SMUG1-6	lnc-SMUG1-6:3	ENSG00000251151.2	HOXC-AS3	HOXC10	NA	chr12:54378946-54384063	inter
LNCA_21_P0002868	0.9853671	A	0.9294412	A	1.03952604145331	0	lncRNA	ENST00000496943	NA	NA	NA	NA	XLOC_003206	NA	ENST00000496943	NA	NA	"BROAD Institute lincRNA (XLOC_003206), lincRNA [TCONS_00005805]"	chr3:107041507-106991589	hs|3q13.12	Agilent_HUMAN_G3V2	ENST00000496943	ENST00000496943	chr3	106991589	107041507	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7635_PI429285431	2.3816774	A	1.721944	A	1.57979066243493	0	lncRNA	9267-1_{1..2763}	lnc-ANKRD40-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD40-1:3	chr17	 48844235	 48846997	-	lnc-ANKRD40-1	lnc-ANKRD40-1:3	ENSG00000167117	C17orf73	NA	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.11;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50"	NA	inter
CUST_13858_PI429285431	0.9151741	A	1.3104819	A	0.76032714298495	0	lncRNA	15502-1_{1..505}	lnc-ARSJ-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARSJ-1:5	chr4	115267946	115268450	-	lnc-ARSJ-1	lnc-ARSJ-1:5	XLOC_004049	linc-ARSJ	NA	NA	NA	inter
LNCA_21_P0014750	0.99430823	A	1.6813713	A	0.621116987056133	0	lncRNA	XR_132486	XR_132486	XR_132486	NA	NA	LOC100652884	uncharacterized LOC100652884	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652884 (LOC100652884), miscRNA [XR_132486]"	chr2:239359099-239359040	hs|2q37.3	Agilent_HUMAN_G3V2	XR_132486	XR_132486	chr2	239359040	239359099	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9689_PI429285431	0.9215175	A	1.2617753	A	0.789900149352911	0	lncRNA	11206-1_{1..3000}	lnc-KCNK10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNK10-1:1	chr14	 88626762	 88629761	-	lnc-KCNK10-1	lnc-KCNK10-1:1	XLOC_011100	linc-GALC-3	NA	NA	NA	inter
CUST_16421_PI429285431	2.0768044	A	1.634506	A	1.35876729628138	0	lncRNA	18120-1_{1..403}	lnc-BRD3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BRD3-1:2	chr9	137000308	137000710	-	lnc-BRD3-1	lnc-BRD3-1:2	XLOC_007882	linc-BRD3-6	WDR5	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-62.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-12.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00chr9:137001210-137010408"	NA	inter
CUST_31361_PI429285431	1.252617	A	1.014669	A	1.17931408470705	0	lncRNA	33141-1_{1..1319}	n337828|AY007113|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|211|NULL|-1.3130600|-0.3465037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337828|AY007113|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|211|NULL|-1.3130600|-0.3465037	chrX	109437413	109438731	+	NA	NA	NA	NA	AMMECR1	NA	chrX:109437414-109448732	inner
CUST_14534_PI429285431	4.133626	P	3.8731577	P	1.19786747028737	0	lncRNA	16202-1_{1..628}	lnc-MAP7D2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MAP7D2-1:2	chrX	 20007804	 20008431	-	lnc-MAP7D2-1	lnc-MAP7D2-1:2	XLOC_008126	linc-CXorf23	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30"	NA	inter
CUST_5162_PI429285431	1.1396551	A	1.176157	A	0.975016203575996	0	lncRNA	5102-1_{1..2863}	"transcript_id ""ENST00000313807.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000313807.4"" | genecode_v17"	chr15	 44825691	 44828553	-	ENSG00000179523.4	ENST00000313807.4	RP11-151N17.2	RP11-151N17.2-001	EIF3J	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00chr15:44829266-44839121"	NA	inter
CUST_38805_PI429285431	7.6669874	P	7.715	P	0.967267881793578	0	lncRNA	39798-1_{1..2055}	n384537|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ipy.1||-0.1598640|-0.3127975	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384537|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ipy.1||-0.1598640|-0.3127975	chr4	159191529	159193583	+	NA	NA	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30"	NA	inter
LNCA_21_P0005435	1.000449	A	0.92866266	A	1.05101724419159	0	lncRNA	TCONS_00013606	NA	NA	NA	NA	XLOC_006269	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006269), lincRNA [TCONS_00013606]"	chr7:135712052-135715729	hs|7q33	Agilent_HUMAN_G3V2	TCONS_00013606	TCONS_00013606	chr7	135712052	135715729	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26537_PI429285431	4.596386	P	4.7405915	P	0.904877561363245	0	lncRNA	28044-1_{1..3000}	lnc-TBC1D8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBC1D8-1:1	chr2	101617556	101620555	-	lnc-TBC1D8-1	lnc-TBC1D8-1:1	ENSG00000223947.1	AC016738.4	TBC1D8	"hg19_refFlat_NPAS2:range=chr2:101521217-1016120445'pad=0,hg19_refFlat_NPAS2:range=chr2:101521217-1016120445'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.10chr2:101623690-101628706"	NA	inner
CUST_28984_PI429285431	0.9138379	A	0.9019383	A	1.00828228409551	0	lncRNA	30705-1_{1..480}	n326465|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097635|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097635|-1.2132300|-0.2367648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326465|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097635|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097635|-1.2132300|-0.2367648	chr1	116807865	116808344	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1932_PI429285431	1.3238554	A	1.3303195	A	0.995529450101088	0	lncRNA	1924-1_{1..443}	"transcript_id ""ENST00000513711.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513711.1"" | genecode_v17"	chr4	147878590	147879032	+	ENSG00000248346.1	ENST00000513711.1	RP11-292D4.1	RP11-292D4.1-001	NA	NA	NA	inter
CUST_3622_PI429285431	3.7088628	A	0.91300726	A	6.94442642639676	0	lncRNA	3592-1_{1..505}	"transcript_id ""ENST00000602311.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602311.1"" | genecode_v17"	chr10	 10461501	 10462005	-	ENSG00000270111.1	ENST00000602311.1	RP11-271F18.4	RP11-271F18.4-001	NA	NA	NA	inter
CUST_5194_PI429285431	1.2829039	A	0.9156074	A	1.28993332811291	0	lncRNA	5135-1_{1..772}	"transcript_id ""ENST00000564843.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564843.1"" | genecode_v17"	chr15	 57611336	 57612107	+	ENSG00000260172.1	ENST00000564843.1	RP11-358M11.3	RP11-358M11.3-001	NA	NA	NA	inter
CUST_3746_PI429285431	0.9821098	A	0.92292655	A	1.04187575885093	0	lncRNA	3715-1_{1..385}	"transcript_id ""ENST00000421256.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421256.1"" | genecode_v17"	chr10	 81390511	 81390895	-	ENSG00000226676.1	ENST00000421256.1	RP11-589B3.6	RP11-589B3.6-002	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_2033_PI429285431	1.50031	A	0.9044602	A	1.5113625711	0	lncRNA	2024-1_{1..692}	"transcript_id ""ENST00000503113.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503113.1"" | genecode_v17"	chr5	  1544222	  1544913	-	ENSG00000251532.1	ENST00000503113.1	CTD-2245E15.3	CTD-2245E15.3-001	NA	NA	NA	inter
CUST_13566_PI429285431	3.6568124	P	3.300773	P	1.27990736763583	0	lncRNA	15207-1_{1..521}	lnc-KIF20B-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIF20B-4:2	chr10	 91674393	 91674913	+	lnc-KIF20B-4	lnc-KIF20B-4:2	XLOC_008554	linc-RPP30-5	NA	NA	NA	inter
CUST_5801_PI429285431	1.5128028	A	1.2132056	A	1.23080072619425	0	lncRNA	5724-1_{1..280}	"transcript_id ""ENST00000579378.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579378.1"" | genecode_v17"	chr17	 28877511	 28877790	-	ENSG00000263860.1	ENST00000579378.1	RP11-218M11.3	RP11-218M11.3-001	TBC1D29	NA	chr17:28867511-28888207	inter
LNCA_21_P0009178	0.9885793	A	0.92446023	A	1.04544638050712	0	lncRNA	ENST00000419257	NA	BC034818	NA	Hs.620808	XLOC_012300	NA	ENST00000419257	THC2607835	NA	"BROAD Institute lincRNA (XLOC_012300), lincRNA [TCONS_00025197]"	chr17:70089526-70089585	hs|17q24.3	Agilent_HUMAN_G3V2	ENST00000419257	ENST00000419257	chr17	 70089526	 70089585	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9779_PI429285431	4.021655	P	4.03812	P	0.988652209128415	0	lncRNA	11296-1_{1..930}	lnc-HIST4H4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HIST4H4-3:1	chr12	 14903596	 14904525	-	lnc-HIST4H4-3	lnc-HIST4H4-3:1	XLOC_010023	linc-GUCY2C	NA	"hg19_refFlat_SYCP2L:range=chr6:10887360-109640395'pad=0,hg19_refFlat_SYCP2L:range=chr6:10887360-109640395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60"	NA	inter
CUST_6359_PI429285431	4.5537443	P	4.643202	P	0.939875976295258	0	lncRNA	6284-1_{1..1128}	"transcript_id ""ENST00000552608.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552608.1"" | genecode_v17"	chr19	 16132736	 16133863	+	ENSG00000205396.6	ENST00000552608.1	LINC00661	LINC00661-003	NA	NA	NA	inter
CUST_26353_PI429285431	2.3678298	A	2.3816774	A	0.990447492952288	0	lncRNA	27860-1_{1..621}	lnc-HEATR4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HEATR4-1:2	chr14	 74100365	 74100985	-	lnc-HEATR4-1	lnc-HEATR4-1:2	ENSG00000258603.1	RP3-414A15.10	NA	NA	NA	inter
CUST_13969_PI429285431	2.149407	A	0.9156945	A	2.35171380479211	0	lncRNA	15615-1_{1..3000}	lnc-CCDC54-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CCDC54-2:7	chr3	107004167	107007166	+	lnc-CCDC54-2	lnc-CCDC54-2:7	XLOC_002746	linc-CCDC54	NA	NA	NA	inter
CUST_8457_PI429285431	5.309652	P	4.4125466	P	1.86232569194616	0	lncRNA	10025-1_{1..636}	lnc-WDR74-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR74-1:8	chr11	 62622896	 62623531	-	lnc-WDR74-1	lnc-WDR74-1:8	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62632960	inter
LNCA_21_P0008392	6.4150944	P	6.6295323	P	0.861881899030483	0	lncRNA	TCONS_00022635	NA	NA	NA	NA	XLOC_010936	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010936), lincRNA [TCONS_00022635]"	chr14:101758211-101758270	hs|14q32.31	Agilent_HUMAN_G3V2	TCONS_00022635	TCONS_00022635	chr14	101758211	101758270	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_540_PI429285431	1.2086797	A	2.1078112	A	0.536209431306161	0	lncRNA	532-1_{1..736}	"transcript_id ""ENST00000568695.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568695.1"" | genecode_v17"	chr1	200638635	200639370	+	ENSG00000260088.1	ENST00000568695.1	RP11-92G12.3	RP11-92G12.3-001	DDX59	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60chr1:200628635-200639126"	NA	inner
CUST_39450_PI429285431	1.1264158	A	0.91472626	A	1.15804357480142	0	lncRNA	40394-1_{1..1018}	n386903|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010urz.1||1.8302800|-0.0709869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386903|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010urz.1||1.8302800|-0.0709869	chr15	100339836	100340853	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013287	0.9672363	A	0.9203329	A	1.0330452147086	0	lncRNA	TCONS_l2_00026419	NA	NA	NA	NA	XLOC_l2_013741	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013741), lincRNA [TCONS_l2_00026419]"	chr7:22689529-22689470	hs|7p15.3	Agilent_HUMAN_G3V2	TCONS_l2_00026419	TCONS_l2_00026419	chr7	 22689470	 22689529	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16701_PI429285431	0.91713023	A	0.90603435	A	1.00772073024842	0	lncRNA	18406-1_{1..349}	lnc-SLITRK6-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK6-6:1	chr13	 85466329	 85466677	-	lnc-SLITRK6-6	lnc-SLITRK6-6:1	XLOC_010676	linc-SLITRK1-7	NA	NA	NA	inter
CUST_36210_PI429285431	1.1106195	A	1.4783703	A	0.774989785148916	0	lncRNA	37466-1_{1..3000}	n344755|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_304|NULL|-1.3597900|-0.3098663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344755|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_304|NULL|-1.3597900|-0.3098663	chr7	 30563993	 30566992	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32533_PI429285431	0.9098232	A	0.9055239	A	1.00298449242955	0	lncRNA	34199-1_{1..2656}	n339142|AK127618|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1572|NULL|-0.0921649|-0.2574352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339142|AK127618|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1572|NULL|-0.0921649|-0.2574352	chr2	218178388	218181043	+	NA	NA	NA	NA	NA	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50"	NA	inter
CUST_18955_PI429285431	6.38943	P	6.5429993	P	0.899023479664872	0	lncRNA	20646-1_{1..524}	lnc-ESRRB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ESRRB-1:1	chr14	 76672976	 76673499	+	lnc-ESRRB-1	lnc-ESRRB-1:1	ENSG00000259027	RP11-361H10.4	C14orf118	NA	chr14:76662976-76669134	inter
CUST_14236_PI429285431	0.92554086	A	0.91781783	A	1.00536755042786	0	lncRNA	15894-1_{1..471}	lnc-C9orf66-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf66-4:1	chr9	   761299	   761769	-	lnc-C9orf66-4	lnc-C9orf66-4:1	XLOC_007628	linc-C9orf66-6	NA	NA	NA	inter
CUST_162_PI429201921	6.4357634	P	6.631815	P	0.872936368788857	0	lncRNA	139-2_{...	TC6_qbl_hap6000199.hg.1	TCONS_00029994-XLOC_014466 // Rinn lincRNAs // linc-GRIP2-3 chr6_qbl_hap6:+:800486-804634 // chr6_qbl_hap6 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6_qbl_hap6:+:800486-804634	NA	Affy_HUMAN_HTA2.0	TCONS_00029994-XLOC_014466	linc-GRIP2-3	chr6_qbl_hap6	   800486	   804634	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39157_PI429285431	0.9293894	A	0.9163135	A	1.00910472131743	0	lncRNA	40134-1_{1..2006}	n385817|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004erg.1||-1.0301800|-0.3136051	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n385817|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004erg.1||-1.0301800|-0.3136051	chrX	118599996	118602001	-	NA	NA	NA	NA	SLC25A5	NA	chrX:118602363-118605359	inner
CUST_46894_PI429285431	4.6578684	P	4.966231	P	0.807557784429861	0	lncRNA	51017-1_{1..2381}	"gi|311201829|ref|NR_037155.1| Homo sapiens septin 4 (SEPT4), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|311201829|ref|NR_037155.1| Homo sapiens septin 4 (SEPT4), transcript variant 5, non-coding RNA"	Chr17	 56597611	 56599991	-	5414	NR_037155.1	NA	NA	NA	NA	NA	inter
CUST_36112_PI429285431	4.2819734	P	4.6760526	P	0.760974913837792	0	lncRNA	37404-1_{1..2378}	n344689|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_238|NULL|-1.3233400|-0.2065797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344689|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_238|NULL|-1.3233400|-0.2065797	chr14	 96552847	 96555224	-	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf132:range=chr14:96505838-965530725'pad=0,hg19_refFlat_C14orf132:range=chr14:96505838-965530725'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10"	NA	inner
CUST_7040_PI429285431	0.92233336	A	0.9225687	A	0.999836888046728	0	lncRNA	6985-1_{1..1773}	"transcript_id ""ENST00000448597.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000448597.1"" | genecode_v17"	chrX	 39164210	 39165982	-	ENSG00000235304.1	ENST00000448597.1	RP11-265P11.2	RP11-265P11.2-001	NA	NA	NA	inter
CUST_39995_PI429285431	1.6402649	A	2.4100385	A	0.586509507464418	0	lncRNA	40861-1_{1..483}	n407110|NR_024612|lncRNA|Homosapiens||RefGeneNoncode|NR_024612||-1.1026400|-0.1520776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407110|NR_024612|lncRNA|Homosapiens||RefGeneNoncode|NR_024612||-1.1026400|-0.1520776	chr16	 71879898	 71880380	+	NA	NA	NA	NA	ATXN1L	NA	chr16:71869898-71919174	inner
CUST_17684_PI429285431	0.925396	A	0.9267553	A	0.999058248763769	0	lncRNA	19413-1_{1..404}	lnc-DMRT2-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRT2-2:5	chr9	  1312841	  1313244	+	lnc-DMRT2-2	lnc-DMRT2-2:5	XLOC_007263	linc-SMARCA2-3	NA	NA	NA	inter
LNCA_21_P0005234	1.6582339	A	0.9152554	A	1.67362754367135	0	lncRNA	ENST00000458615	NA	NA	NA	NA	XLOC_006102	NA	ENST00000458615	THC2676871	NA	"BROAD Institute lincRNA (XLOC_006102), lincRNA [TCONS_00013012]"	chr7:54417231-54417290	hs|7p11.2	Agilent_HUMAN_G3V2	ENST00000458615	ENST00000458615	chr7	 54417231	 54417290	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43014_PI429285431	0.9085572	A	1.3930659	A	0.71474042843082	0	lncRNA	46255-1_{1..127}	ENST00000408111 ncrna:snRNA chromosome:GRCh37:17:29890787:29890913:-1 gene:ENSG00000221038 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408111 ncrna:snRNA chromosome:GRCh37:17:29890787:29890913:-1 gene:ENSG00000221038 gene_biotype:snRNA transcript_biotype:snRNA	chr17	 29890787	 29890913	-	ENSG00000221038	ENST00000408111	NA	NA	NA	NA	NA	inter
CUST_892_PI429285431	4.053026	P	4.258795	P	0.867076386069054	0	lncRNA	881-1_{1..2005}	"transcript_id ""ENST00000457668.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457668.1"" | genecode_v17"	chr2	 60577730	 60579734	-	ENSG00000228590.1	ENST00000457668.1	AC007381.3	AC007381.3-001	NA	NA	NA	inter
CUST_47375_PI429285431	5.4532204	P	5.24422	P	1.15588702703469	0	lncRNA	51423-1_{1..825}	"gi|410170760|ref|XR_171075.1| PREDICTED: Homo sapiens uncharacterized LOC101060027 (LOC101060027), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170760|ref|XR_171075.1| PREDICTED: Homo sapiens uncharacterized LOC101060027 (LOC101060027), misc_RNA"	NA	NA	NA	NA	NA	XR_171075.1	NA	NA	NA	NA	NA	Unknown
CUST_31803_PI429285431	1.6928387	A	3.031425	A	0.395407927242308	0	lncRNA	33540-1_{1..2988}	n338344|AK095221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|738|NULL|-0.8939600|-0.1297430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338344|AK095221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|738|NULL|-0.8939600|-0.1297430	chr19	 16234470	 16237457	-	NA	NA	NA	NA	HSH2D	"hg19_refFlat_RAB8A:range=chr19:16222712-162431145'pad=0,hg19_refFlat_RAB8A:range=chr19:16222712-162431145'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70chr19:16244838-16260702"	NA	inner
CUST_2571_PI429285431	0.92344075	A	1.0381095	A	0.923594348269646	0	lncRNA	2559-1_{1..351}	"transcript_id ""ENST00000443471.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443471.2"" | genecode_v17"	chr6	 84437774	 84438124	+	ENSG00000237874.2	ENST00000443471.2	RP3-393K13.1	RP3-393K13.1-001	NA	NA	NA	inter
CUST_45769_PI429285431	10.809591	P	11.597013	P	0.579378478259947	0	lncRNA	50114-1_{1..1576}	"gi|336594381|ref|NR_038904.1| Homo sapiens uncharacterized LOC100506305 (LOC100506305), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336594381|ref|NR_038904.1| Homo sapiens uncharacterized LOC100506305 (LOC100506305), non-coding RNA"	Chr11	 13001081	 13002656	-	100506305	NR_038904.1	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-32.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20"	NA	inter
CUST_3659_PI429285431	3.964368	P	4.6344523	P	0.628469963237956	0	lncRNA	3628-1_{1..335}	"transcript_id ""ENST00000436077.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436077.1"" | genecode_v17"	chr10	 37529815	 37530149	+	ENSG00000234918.1	ENST00000436077.1	RP11-20F24.2	RP11-20F24.2-001	ANKRD30A	NA	chr10:37519815-37521495	inter
CUST_44438_PI429285431	5.3521748	P	5.099683	P	1.19126286949853	0	lncRNA	49049-2_{3001..3969}	"gi|372266195|ref|NR_045958.1| Homo sapiens endothelin receptor type A (EDNRA), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372266195|ref|NR_045958.1| Homo sapiens endothelin receptor type A (EDNRA), transcript variant 4, non-coding RNA"	Chr4	148405069	148406037	+	1909	NR_045958.1	NA	NA	NA	NA	NA	inter
CUST_45667_PI429285431	5.1352177	P	4.7733307	P	1.28510567681371	0	lncRNA	50043-1_{1..2798}	"gi|375151562|ref|NR_046315.1| Homo sapiens biogenesis of lysosomal organelles complex-1, subunit 2 (BLOC1S2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375151562|ref|NR_046315.1| Homo sapiens biogenesis of lysosomal organelles complex-1, subunit 2 (BLOC1S2), transcript variant 4, non-coding RNA"	Chr10	102033035	102035832	-	282991	NR_046315.1	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40"	NA	inter
LNCA_21_P0014462	0.92560977	A	0.9145023	A	1.00772882588183	0	lncRNA	XR_109944	XR_109944	XR_109944	NA	NA	ZNF638-IT1	ZNF638 intronic transcript 1 (non-protein coding)	NA	THC2561802	NA	"PREDICTED: Homo sapiens ZNF638 intronic transcript 1 (non-protein coding) (ZNF638-IT1), miscRNA [XR_109944]"	chr2:71604061-71604120	hs|2p13.2	Agilent_HUMAN_G3V2	XR_109944	XR_109944	chr2	 71604061	 71604120	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7205_PI429285431	0.9244297	A	0.9248683	A	0.999696031854287	0	lncRNA	7610-1_{1..307}	"transcript_id ""ENST00000411074.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411074.1"" | genecode_v17"	chr4	121982327	121982633	-	ENSG00000223006.1	ENST00000411074.1	RN7SKP137	RN7SKP137-201	NDNF	NA	chr4:121972327-121992633	inner
CUST_350_PI429201921	3.0991783	A	3.21824	A	0.920786316927838	0	lncRNA	227-2_{3001..6000}	TC03002819.hg.1	 TCONS_l2_00019181-XLOC_l2_010118 // Broad TUCP // linc-XPC-1 chr3:-:14390736-14398336 // chr3 // 100 // 100 // 0 // --- // 0///TCONS_l2_00020086-XLOC_l2_010118 // Broad TUCP // linc-XPC-1 chr3:-:14389950-14394068 // chr3 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr3:-:14389950-14394068	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00020086-XLOC_l2_010118	linc-XPC-1	chr3	 14389950	 14394068	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14555_PI429285431	1.3769329	A	0.92655236	A	1.36640062502962	0	lncRNA	16224-1_{1..772}	lnc-SLC15A4-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC15A4-2:4	chr12	128602670	128603441	-	lnc-SLC15A4-2	lnc-SLC15A4-2:4	XLOC_010257	linc-DHX37-11	NA	NA	NA	inter
CUST_603_PI429285431	1.4611495	A	0.9232125	A	1.45189487677861	0	lncRNA	595-1_{1..372}	"transcript_id ""ENST00000430921.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430921.1"" | genecode_v17"	chr1	232853817	232854188	+	ENSG00000225919.1	ENST00000430921.1	RP11-66A2.1	RP11-66A2.1-001	NA	NA	NA	inter
CUST_33305_PI429285431	3.4984727	P	3.4881577	P	1.00717543410689	0	lncRNA	34888-1_{1..1759}	n340022|BC021910|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2476|NULL|-0.5505600|-0.2062035	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340022|BC021910|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2476|NULL|-0.5505600|-0.2062035	chr10	 47011752	 47013510	-	NA	NA	NA	NA	ANXA8L1	NA	chr10:47157989-47174040	inner
CUST_12099_PI429285431	4.4610195	P	4.430935	P	1.02107192909519	0	lncRNA	13695-1_{1..358}	lnc-LRFN5-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRFN5-1:5	chr14	 41443545	 41443902	+	lnc-LRFN5-1	lnc-LRFN5-1:5	XLOC_010813	linc-LRFN5-1	NA	NA	NA	inter
CUST_43866_PI429285431	2.8380089	A	2.5856683	A	1.19113802710114	0	lncRNA	48587-1_{1..1608}	"gi|239735503|ref|NR_003683.2| Homo sapiens Alstrom syndrome 1 pseudogene (ALMS1P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239735503|ref|NR_003683.2| Homo sapiens Alstrom syndrome 1 pseudogene (ALMS1P), non-coding RNA"	Chr2	 73872046	 73873653	+	200420	NR_003683.2	NA	NA	NA	NA	NA	inter
CUST_45575_PI429285431	6.247893	P	6.795079	P	0.68435367030412	0	lncRNA	49969-1_{1..2441}	"gi|410170599|ref|XR_171099.1| PREDICTED: Homo sapiens uncharacterized LOC283028 (LOC283028), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170599|ref|XR_171099.1| PREDICTED: Homo sapiens uncharacterized LOC283028 (LOC283028), misc_RNA"	Chr10	 43248359	 43250799	-	283028	XR_171099.2	NA	NA	NA	NA	NA	inter
CUST_5613_PI429285431	1.0654365	A	1.5892177	A	0.695546464852636	0	lncRNA	5541-1_{1..375}	"transcript_id ""ENST00000562748.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562748.1"" | genecode_v17"	chr16	 73533208	 73533582	+	ENSG00000260687.1	ENST00000562748.1	RP11-44L9.2	RP11-44L9.2-001	NA	NA	NA	inter
CUST_31930_PI429285431	2.237517	A	3.260366	A	0.492143518633073	0	lncRNA	33658-1_{1..2782}	n338485|AX746481|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|882|NULL|0.3154460|-0.2411174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n338485|AX746481|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|882|NULL|0.3154460|-0.2411174	chr1	205342379	205345160	+	NA	NA	NA	NA	LEMD1	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chr1:205350506-205366568"	NA	inner
CUST_6013_PI429285431	8.228146	P	8.272324	P	0.969842243631453	0	lncRNA	5938-1_{1..566}	"transcript_id ""ENST00000574041.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000574041.1"" | genecode_v17"	chr17	 79353398	 79353963	-	ENSG00000262223.2	ENST00000574041.1	RP11-1055B8.3	RP11-1055B8.3-004	LOC100130370	NA	chr17:79352934-79357447	inter
CUST_11479_PI429285431	0.91120446	A	0.91519964	A	0.997234583076741	0	lncRNA	13046-1_{1..321}	lnc-AC011294.3.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC011294.3.1-2:1	chr7	 46484729	 46485049	-	lnc-AC011294.3.1-2	lnc-AC011294.3.1-2:1	XLOC_006432	linc-IGFBP3-4	NA	NA	NA	inter
CUST_43636_PI429285431	0.9100354	A	0.9133452	A	0.997708451078045	0	lncRNA	48395-1_{1..310}	"gi|33563316|ref|NR_001560.1| Homo sapiens cytochrome c, somatic pseudogene 52 (CYCSP52), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|33563316|ref|NR_001560.1| Homo sapiens cytochrome c, somatic pseudogene 52 (CYCSP52), non-coding RNA"	Chr1	157098154	157098463	+	360155	NR_001560.1	NA	NA	NA	"hg19_refFlat_RORA:range=chr15:60789654-609195735'pad=0,hg19_refFlat_RORA:range=chr15:60789654-609195735'pad=0 3'pad=0 strand=- repeatMasking=none,-27.70"	NA	inter
CUST_24912_PI429285431	9.578445	P	9.481435	P	1.06955450144642	0	lncRNA	26453-1_{1..418}	lnc-PDZD7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDZD7-1:1	chr10	102767226	102767643	-	lnc-PDZD7-1	lnc-PDZD7-1:1	ENSG00000224915.1	RP11-108L7.7	LZTS2	"hg19_refFlat_LZTS2:range=chr10:102762296-1027669255'pad=0,hg19_refFlat_LZTS2:range=chr10:102762296-1027669255'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40chr10:102757226-102767593"	NA	inner
CUST_40635_PI429285431	4.3236704	P	4.611564	P	0.819097104748178	0	lncRNA	41376-1_{1..1944}	n410139|NR_036583|lncRNA|Homosapiens||RefGeneNoncode|NR_036583||-0.1906290|-0.3523028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410139|NR_036583|lncRNA|Homosapiens||RefGeneNoncode|NR_036583||-0.1906290|-0.3523028	chr12	 11323779	 11325722	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6200_PI429285431	3.137367	P	3.6539464	P	0.69902724902109	0	lncRNA	6126-1_{1..524}	"transcript_id ""ENST00000593180.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593180.1"" | genecode_v17"	chr18	 53755641	 53756164	+	ENSG00000267057.1	ENST00000593180.1	RP11-456O19.2	RP11-456O19.2-002	NA	NA	NA	inter
CUST_5385_PI429285431	0.91678756	A	0.9141911	A	1.00180134941254	0	lncRNA	5319-1_{1..984}	"transcript_id ""ENST00000599946.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599946.1"" | genecode_v17"	chr16	  1041148	  1042131	-	ENSG00000260496.2	ENST00000599946.1	RP11-161M6.3	RP11-161M6.3-201	LMF1	NA	chr16:1031148-1031318	inter
LNCA_21_P0002090	0.9256185	A	0.9216284	A	1.00276955471526	0	lncRNA	ENST00000424355	NA	NA	NA	NA	XLOC_002255	NA	ENST00000424355	NA	NA	"BROAD Institute lincRNA (XLOC_002255), lincRNA [TCONS_00003364]"	chr2:108666035-108665656	hs|2q12.3	Agilent_HUMAN_G3V2	ENST00000424355	ENST00000424355	chr2	108665656	108666035	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6977_PI429285431	0.9170022	A	0.92651796	A	0.993425882474152	0	lncRNA	6925-1_{1..590}	"transcript_id ""ENST00000452181.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452181.1"" | genecode_v17"	chr22	 32669407	 32669996	+	ENSG00000224050.1	ENST00000452181.1	RP1-90G24.6	RP1-90G24.6-001	NA	NA	NA	inter
CUST_25120_PI429285431	3.345039	P	3.3237915	A	1.01483663085751	0	lncRNA	26658-1_{1..403}	lnc-DPP4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DPP4-1:2	chr2	162279430	162279832	-	lnc-DPP4-1	lnc-DPP4-1:2	ENSG00000224076.1	AC009487.4	TBR1	NA	chr2:162272620-162281573	inner
CUST_6342_PI429285431	1.3877766	A	1.7411951	A	0.782727208172631	0	lncRNA	6266-1_{1..627}	"transcript_id ""ENST00000592263.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592263.1"" | genecode_v17"	chr19	 14365001	 14365627	-	ENSG00000267723.1	ENST00000592263.1	CTD-2189E23.1	CTD-2189E23.1-001	NA	NA	NA	inter
CUST_12735_PI429285431	0.9473325	A	0.92040986	A	1.01883656323441	0	lncRNA	14360-1_{1..678}	lnc-NOX3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOX3-3:1	chr6	156139084	156139761	-	lnc-NOX3-3	lnc-NOX3-3:1	XLOC_005889	linc-NOX3-1	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-34.71;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90"	NA	inter
CUST_27761_PI429285431	0.90737814	A	0.9106748	A	0.997717538202058	0	lncRNA	29343-1_{1..400}	n324978|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079545|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079545|-1.0829000|-0.3248175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324978|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079545|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079545|-1.0829000|-0.3248175	chr20	 44083895	 44084294	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009468	0.9282761	A	0.9269213	A	1.00093951686996	0	lncRNA	TCONS_00026300	NA	NA	NA	NA	XLOC_012645	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012645), lincRNA [TCONS_00026300]"	chr18:22520311-22520370	hs|18q11.2	Agilent_HUMAN_G3V2	TCONS_00026300	TCONS_00026300	chr18	 22520311	 22520370	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27449_PI429285431	6.3745704	P	6.787925	P	0.750875383134312	0	lncRNA	29019-1_{1..381}	n324625|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000132641|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000132641|-1.2843000|-0.2955499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324625|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000132641|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000132641|-1.2843000|-0.2955499	chr5	131542825	131543205	-	NA	NA	NA	NA	P4HA2	NA	chr5:131532825-131554720	inner
CUST_29583_PI429285431	5.612399	P	4.3352757	P	2.42355244103375	0	lncRNA	31343-1_{1..1242}	n333087|AF286190|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076303|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076303|4.5682300|-0.0840960	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333087|AF286190|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076303|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076303|4.5682300|-0.0840960	chr4	  7194475	  7195716	+	NA	NA	NA	NA	SORCS2	NA	chr4:7194374-7687967	inner
CUST_11180_PI429285431	4.74179	P	4.7535267	P	0.991897741164682	0	lncRNA	12737-1_{1..519}	lnc-ZNF74-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF74-1:9	chr22	 20853528	 20854046	+	lnc-ZNF74-1	lnc-ZNF74-1:9	XLOC_014159	linc-MED15	KLHL22	NA	chr22:20843528-20850170	inter
CUST_34264_PI429285431	0.92384475	A	1.9126627	A	0.50389046084305	0	lncRNA	35765-1_{1..436}	n341122|AY364431|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3588|NULL|1.1775600|-0.1256993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341122|AY364431|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3588|NULL|1.1775600|-0.1256993	chr11	112123082	112123517	-	NA	NA	NA	NA	C11orf34	NA	chr11:112113082-112131583	inner
CUST_30811_PI429285431	0.92164356	A	0.9149225	A	1.00466955232784	0	lncRNA	32598-1_{1..319}	n336738|Z75933|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328100|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328100|-0.9713760|-0.1849965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336738|Z75933|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328100|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328100|-0.9713760|-0.1849965	chr14	 22466181	 22466499	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22320_PI429285431	0.9146949	A	1.0258887	A	0.925821646770979	0	lncRNA	23919-1_{1..562}	lnc-CYB561-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYB561-4:1	chr17	 61390672	 61391233	-	lnc-CYB561-4	lnc-CYB561-4:1	ENSG00000263501.1	RP11-269G24.2	TANC2	NA	chr17:61380672-61400882	inner
CUST_1467_PI429285431	0.92738974	A	0.9123602	A	1.01047213626559	0	lncRNA	1456-1_{1..646}	"transcript_id ""ENST00000469216.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000469216.1"" | genecode_v17"	chr3	137493834	137494479	+	ENSG00000239513.1	ENST00000469216.1	RP11-2A4.3	RP11-2A4.3-004	SOX14	NA	chr3:137483834-137485176	inter
CUST_47991_PI429285431	1.8945981	A	2.2847552	A	0.763046509210514	0	lncRNA	51879-1_{1..806}	"gi|410173078|ref|XR_172122.1| PREDICTED: Homo sapiens uncharacterized LOC100287598 (LOC100287598), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|410173078|ref|XR_172122.1| PREDICTED: Homo sapiens uncharacterized LOC100287598 (LOC100287598), misc_RNA"	NA	NA	NA	NA	NA	XR_172122.1	NA	NA	NA	NA	NA	Unknown
CUST_14313_PI429285431	1.0109819	A	0.9150006	A	1.06879213759542	0	lncRNA	15971-1_{1..471}	lnc-HES4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HES4-1:1	chr1	   948297	   948767	-	lnc-HES4-1	lnc-HES4-1:1	XLOC_000671	linc-HES4-1	AGRN	"hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60chr1:955503-958573"	NA	inter
CUST_44580_PI429285431	1.6324228	A	1.6359899	A	0.997530528865232	0	lncRNA	49161-1_{1..1931}	"gi|223972624|ref|NR_026936.1| Homo sapiens chromosome 5 open reading frame 27 (C5orf27), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223972624|ref|NR_026936.1| Homo sapiens chromosome 5 open reading frame 27 (C5orf27), non-coding RNA"	Chr5	 95187936	 95189866	+	202299	NR_026936.1	NA	NA	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20"	NA	inter
LNCA_21_P0001659	2.3256764	A	2.6316206	A	0.808912634566265	0	lncRNA	TCONS_00001924	NA	NA	NA	NA	XLOC_000027	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000027), lincRNA [TCONS_00001924]"	chr1:2734262-2734321	hs|1p36.32	Agilent_HUMAN_G3V2	TCONS_00001924	TCONS_00001924	chr1	  2734262	  2734321	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38991_PI429285431	1.2309886	A	0.9114372	A	1.24794244607157	0	lncRNA	39972-1_{1..487}	n385255|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vcp.1||-0.9970010|-0.4384287	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385255|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vcp.1||-0.9970010|-0.4384287	chr7	104748533	104749019	-	NA	NA	NA	NA	SRPK2	NA	chr7:104756823-104759020	inner
CUST_2689_PI429285431	3.6575875	P	3.7077744	P	0.965811200743713	0	lncRNA	2675-1_{1..3000}	"transcript_id ""ENST00000604521.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604521.1"" | genecode_v17"	chr6	160529406	160532405	+	ENSG00000270949.1	ENST00000604521.1	RP11-288H12.4	RP11-288H12.4-001	IGF2R	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60chr6:160519406-160527583"	NA	inter
CUST_6645_PI429285431	1.3107383	A	1.330708	A	0.986253417924754	0	lncRNA	6591-1_{1..696}	"transcript_id ""ENST00000558175.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558175.1"" | genecode_v17"	chr20	 11781111	 11781806	-	ENSG00000228422.3	ENST00000558175.1	LINC00687	LINC00687-003	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90"	NA	inter
CUST_49427_PI429285431	4.015421	P	3.9939706	P	1.01497936707467	0	lncRNA	53230-1_{1..876}	hg19_lincRNAsTranscripts_TCONS_l2_00022661 range=chr5:177366580-177387113 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022661 range=chr5:177366580-177387113 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	177366580	177367455	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20"	NA	inter
LNCA_21_P0010045	7.2678165	P	7.7328286	P	0.724465001105396	0	lncRNA	AK128705	NA	AK128705	NA	Hs.640065	LOC100128591	uncharacterized LOC100128591	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013766), lincRNA [TCONS_00028412]"	chr20:44963746-44963687	hs|20q13.12	Agilent_HUMAN_G3V2	AK128705	AK128705	chr20	 44963687	 44963746	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3887_PI429285431	11.989578	P	11.897535	P	1.06587850445375	0	lncRNA	3856-1_{1..716}	"transcript_id ""ENST00000524858.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524858.1"" | genecode_v17"	chr11	 26307258	 26307973	-	ENSG00000254819.1	ENST00000524858.1	RP11-430L3.1	RP11-430L3.1-001	NA	NA	NA	inter
LNCA_21_P0012693	2.227367	A	3.0902739	A	0.549843556018159	0	lncRNA	ENST00000508106	XM_003403498	XM_003403498	NA	Hs.591689	XLOC_l2_011309	NA	ENST00000508106	THC2608145	NA	"BROAD Institute lincRNA (XLOC_l2_011309), lincRNA [TCONS_l2_00021350]"	chr4:150654459-150654400	hs|4q31.23	Agilent_HUMAN_G3V2	ENST00000508106	ENST00000508106	chr4	150654400	150654459	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10994_PI429285431	0.90325296	A	0.9248231	A	0.985159933726249	0	lncRNA	12538-1_{1..482}	lnc-TGFBRAP1-11:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGFBRAP1-11:2	chr2	104955344	104955825	-	lnc-TGFBRAP1-11	lnc-TGFBRAP1-11:2	XLOC_002236	linc-MFSD9-6	NA	NA	NA	inter
CUST_18805_PI429285431	0.92106503	A	0.92124534	A	0.999875026441719	0	lncRNA	20500-1_{1..581}	lnc-C3orf32-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C3orf32-2:2	chr3	  8653544	  8654124	-	lnc-C3orf32-2	lnc-C3orf32-2:2	ENSG00000227110	AC087859.1	C3orf32	NA	chr3:8661317-8663586	inter
CUST_18311_PI429285431	11.386812	P	10.7440605	P	1.56130403200053	0	lncRNA	20038-1_{1..1075}	lnc-DDX27-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DDX27-1:3	chr20	 47905582	 47906656	+	lnc-DDX27-1	lnc-DDX27-1:3	ENSG00000177410	ZNFX1-AS1	NA	NA	NA	inter
CUST_33687_PI429285431	1.178211	A	1.6578518	A	0.717156158222462	0	lncRNA	35248-1_{1..1086}	n340460|BC016343|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2921|NULL|-1.1459500|-0.2822554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340460|BC016343|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2921|NULL|-1.1459500|-0.2822554	chr17	  3732051	  3733136	+	NA	NA	NA	NA	C17orf85	"hg19_refFlat_C17orf85:range=chr17:3716338-37495175'pad=0,hg19_refFlat_C17orf85:range=chr17:3716338-37495175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr17:3722051-3743105"	NA	inner
CUST_26192_PI429285431	1.7110087	A	1.6417267	A	1.04919439094245	0	lncRNA	27703-1_{1..606}	lnc-P4HA2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-P4HA2-2:3	chr5	131695773	131696378	-	lnc-P4HA2-2	lnc-P4HA2-2:3	ENSG00000233006.1	AC034220.3	SLC22A5	"hg19_refFlat_SLC22A4:range=chr5:131630310-1316795285'pad=0,hg19_refFlat_SLC22A4:range=chr5:131630310-1316795285'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00chr5:131705401-131705828"	NA	inter
CUST_28212_PI429285431	3.6695924	P	3.745514	P	0.948735870645364	0	lncRNA	29842-1_{1..256}	n325496|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322420|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322420|-1.0848100|-0.0441723	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325496|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322420|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322420|-1.0848100|-0.0441723	chr2	   731976	   732231	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13681_PI429285431	2.2217672	A	2.1154566	A	1.07647185509388	0	lncRNA	15320-1_{1..1651}	lnc-MRFAP1L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRFAP1L1-1:1	chr4	  6692035	  6693685	-	lnc-MRFAP1L1-1	lnc-MRFAP1L1-1:1	XLOC_003871	linc-PPP2R2C-2	S100P	NA	chr4:6695566-6698897	inter
CUST_33622_PI429285431	0.9306786	A	0.9523178	A	0.985112776485985	0	lncRNA	35187-1_{1..2325}	n340381|AK056198|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2842|NULL|-0.6201720|-0.2927826	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340381|AK056198|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2842|NULL|-0.6201720|-0.2927826	chr5	 10438174	 10440498	+	NA	NA	NA	NA	6-Mar	NA	chr5:10428174-10435491	inner
CUST_48077_PI429285431	5.814124	P	5.8076825	P	1.00447489011488	0	lncRNA	51953-1_{1..1757}	"gi|397138282|ref|XR_159433.1| PREDICTED: Homo sapiens uncharacterized LOC100996918 (LOC100996918), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138282|ref|XR_159433.1| PREDICTED: Homo sapiens uncharacterized LOC100996918 (LOC100996918), misc_RNA"	NA	NA	NA	NA	NA	XR_159433.1	NA	NA	NA	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-14.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-23.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0,hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-29.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	Unknown
CUST_3075_PI429285431	6.0733614	P	5.109576	P	1.95042077758528	0	lncRNA	3054-1_{1..199}	"transcript_id ""ENST00000517363.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517363.1"" | genecode_v17"	chr8	 37333472	 37333670	-	ENSG00000253161.1	ENST00000517363.1	RP11-150O12.1	RP11-150O12.1-002	NA	NA	NA	inter
CUST_40050_PI429285431	0.9231055	A	0.936021	A	0.991087610493877	0	lncRNA	40903-1_{1..1805}	n407254|NR_026717_4|lncRNA|Homosapiens||RefGeneNoncode|NR_026717_4||-0.7625840|-0.1938894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407254|NR_026717_4|lncRNA|Homosapiens||RefGeneNoncode|NR_026717_4||-0.7625840|-0.1938894	chr6	  3271661	  3273465	+	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00chr6:3269207-3291933"	NA	inner
CUST_29717_PI429285431	0.92371005	A	1.0017792	A	0.947324663171814	0	lncRNA	31479-1_{1..441}	n333387|BC005363|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086518_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086518_08|1.2841500|-0.1889105	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333387|BC005363|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086518_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086518_08|1.2841500|-0.1889105	chrX	 49325444	 49325884	+	NA	NA	NA	NA	GAGE1	NA	chrX:49363616-49373139	inner
CUST_7092_PI429285431	8.297025	P	8.372876	P	0.9487822993011	0	lncRNA	7027-1_{1..762}	"transcript_id ""ENST00000602546.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602546.1"" | genecode_v17"	chrX	 73164181	 73164942	+	ENSG00000225470.2	ENST00000602546.1	JPX	JPX-011	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50"	NA	inter
CUST_40431_PI429285431	0.9160221	A	0.9118367	A	1.00290531046733	0	lncRNA	41213-1_{1..824}	n409314|NR_033667|lncRNA|Homosapiens||RefGeneNoncode|NR_033667||0.2127910|-0.2316889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409314|NR_033667|lncRNA|Homosapiens||RefGeneNoncode|NR_033667||0.2127910|-0.2316889	chrY	 14517914	 14518737	-	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20"	NA	inter
CUST_39837_PI429285431	0.9152424	A	0.9126916	A	1.00176964380292	0	lncRNA	40740-4_{9001..9226}	n406441|NR_022012|lncRNA|Homosapiens||RefGeneNoncode|NR_022012||17.5057000|-0.3286454	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406441|NR_022012|lncRNA|Homosapiens||RefGeneNoncode|NR_022012||17.5057000|-0.3286454	chr3	130073358	130073583	+	NA	NA	NA	NA	COL6A5	NA	chr3:130064359-130203688	inner
LNCA_21_P0004316	2.7106209	A	4.377958	P	0.314833922324301	0	lncRNA	TCONS_00010144	NA	NA	NA	NA	XLOC_004611	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004611), lincRNA [TCONS_00010144]"	chr5:154263168-154263227	hs|5q33.2	Agilent_HUMAN_G3V2	TCONS_00010144	TCONS_00010144	chr5	154263168	154263227	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008722	5.8305926	P	5.9202704	P	0.939732598161034	0	lncRNA	TCONS_00023629	NA	NA	NA	NA	XLOC_011429	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011429), lincRNA [TCONS_00023629]"	chr15:38332584-38332525	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00023629	TCONS_00023629	chr15	 38332525	 38332584	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14243_PI429285431	5.532857	P	5.5350056	P	0.998511812418846	0	lncRNA	15901-1_{1..301}	lnc-MINPP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MINPP1-1:1	chr10	 89209233	 89209533	+	lnc-MINPP1-1	lnc-MINPP1-1:1	XLOC_008543	linc-MINPP1	NA	NA	NA	inter
CUST_15979_PI429285431	6.989022	P	7.58899	P	0.659768589359752	0	lncRNA	17678-1_{1..1225}	lnc-COL6A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL6A1-1:1	chr21	 47394008	 47395232	+	lnc-COL6A1-1	lnc-COL6A1-1:1	XLOC_013986	linc-COL6A1	COL6A1	NA	chr21:47401663-47404868	inter
CUST_25908_PI429285431	7.03822	P	7.150586	P	0.925069715602533	0	lncRNA	27427-1_{1..891}	lnc-RP11-728F11.4.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-728F11.4.1-1:2	chr11	117707883	117708773	+	lnc-RP11-728F11.4.1-1	lnc-RP11-728F11.4.1-1:2	ENSG00000254528.2	RP11-728F11.4	FXYD6-FXYD2	NA	chr11:117697883-117718370	inner
CUST_45969_PI429285431	2.4451234	A	2.0946112	A	1.27501321489711	0	lncRNA	50262-1_{1..1084}	"gi|301601612|ref|NR_036440.1| Homo sapiens POU class 5 homeobox 1 pseudogene 3 (POU5F1P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301601612|ref|NR_036440.1| Homo sapiens POU class 5 homeobox 1 pseudogene 3 (POU5F1P3), non-coding RNA"	Chr12	  8286365	  8287448	-	642559	NR_036440.1	NA	NA	NA	NA	NA	inter
CUST_6195_PI429285431	1.4944965	A	0.9187052	A	1.49049475650468	0	lncRNA	6121-1_{1..555}	"transcript_id ""ENST00000589754.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589754.1"" | genecode_v17"	chr18	 53707563	 53708117	-	ENSG00000206129.3	ENST00000589754.1	CTD-2008L17.2	CTD-2008L17.2-002	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40"	NA	inter
CUST_41955_PI429285431	0.9140539	A	1.266078	A	0.783484098857985	0	lncRNA	43730-1_{1..87}	ENST00000408621 ncrna:miRNA chromosome:GRCh37:19:54261486:54261572:1 gene:ENSG00000221548 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408621 ncrna:miRNA chromosome:GRCh37:19:54261486:54261572:1 gene:ENSG00000221548 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54261486	 54261572	+	ENSG00000221548	ENST00000408621	NA	NA	NA	NA	NA	inter
CUST_49619_PI429285431	2.17285	A	2.0791068	A	1.06713537082823	0	lncRNA	53405-3_{6001..6640}	hg19_lincRNAsTranscripts_TCONS_l2_00025633 range=chr7:6676931-6696870 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025633 range=chr7:6676931-6696870 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  6682931	  6683570	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40256_PI429285431	6.9301786	P	6.892925	P	1.02615850980768	0	lncRNA	41068-2_{3001..4874}	n408181|NR_028324|lncRNA|Homosapiens||RefGeneNoncode|NR_028324||2.6573900|-0.1155718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n408181|NR_028324|lncRNA|Homosapiens||RefGeneNoncode|NR_028324||2.6573900|-0.1155718	chr19	   200015	   201888	-	NA	NA	NA	NA	LOC100507200	NA	chr19:187015-195690	inter
LNCA_19_P00317053	2.7765002	A	0.9293523	A	3.59788207184776	0	lncRNA	TCONS_00012259	NA	NA	NA	NA	XLOC_005810	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005810), lincRNA [TCONS_00012259]"	chr6:113948717-113948658	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00012259	TCONS_00012259	chr6	113948658	113948717	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_507_PI429285431	1.0124036	A	0.92570406	A	1.0619380010679	0	lncRNA	499-1_{1..400}	"transcript_id ""ENST00000562817.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562817.1"" | genecode_v17"	chr1	185290288	185290687	-	ENSG00000261024.1	ENST00000562817.1	GS1-279B7.1	GS1-279B7.1-003	IVNS1ABP	NA	chr1:185280288-185286461	inter
CUST_41154_PI429285431	0.9217062	A	0.90951365	A	1.00848704413	0	lncRNA	41960-1_{1..81}	ENST00000583084 ncrna:miRNA chromosome:GRCh37:10:59064239:59064319:-1 gene:ENSG00000264747 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583084 ncrna:miRNA chromosome:GRCh37:10:59064239:59064319:-1 gene:ENSG00000264747 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 59064239	 59064319	-	ENSG00000264747	ENST00000583084	NA	NA	NA	NA	NA	inter
CUST_24779_PI429285431	2.5408864	A	3.1505804	P	0.655335685878596	0	lncRNA	26322-1_{1..382}	lnc-MFSD9-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MFSD9-4:1	chr2	102798354	102798735	-	lnc-MFSD9-4	lnc-MFSD9-4:1	ENSG00000226925.1	AC007271.3	IL1R1	NA	chr2:102788354-102796334	inter
CUST_9995_PI429285431	7.573363	P	7.892809	P	0.801377550326755	0	lncRNA	11521-1_{1..579}	lnc-LAT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LAT2-1:1	chr7	 73669345	 73669923	+	lnc-LAT2-1	lnc-LAT2-1:1	XLOC_006144	linc-CLIP2	RFC2	NA	chr7:73659345-73668738	inter
LNCA_21_P0008418	0.99995494	A	0.9282272	A	1.05097455439372	0	lncRNA	TCONS_00022700	NA	NA	NA	NA	XLOC_010989	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010989), lincRNA [TCONS_00022700]"	chr14:32669822-32669763	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022700	TCONS_00022700	chr14	 32669763	 32669822	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23040_PI429285431	0.92853004	A	0.90926754	A	1.01344128017558	0	lncRNA	24611-1_{1..440}	lnc-UACA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UACA-1:1	chr15	 71071121	 71071560	-	lnc-UACA-1	lnc-UACA-1:1	ENSG00000259624.1	RP11-138H8.3	NA	NA	NA	inter
CUST_50390_PI429285431	1.0748745	A	1.0435628	A	1.02194085324903	0	lncRNA	54097-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030394 range=chrX:149116253-149187439 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030394 range=chrX:149116253-149187439 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	149116253	149119252	+	NA	NA	NA	NA	CXorf40B	NA	chrX:149106253-149106716	inter
CUST_5686_PI429285431	0.8993323	A	0.90855896	A	0.993624973891386	0	lncRNA	5610-1_{1..550}	"transcript_id ""ENST00000563921.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563921.1"" | genecode_v17"	chr16	 87527793	 87528342	+	ENSG00000260750.1	ENST00000563921.1	RP11-482M8.1	RP11-482M8.1-003	ZCCHC14	NA	chr16:87517793-87525460	inter
CUST_41484_PI429285431	1.2017666	A	0.9233623	A	1.21285266054909	0	lncRNA	42685-1_{1..81}	ENST00000408753 ncrna:miRNA chromosome:GRCh37:1:193105633:193105713:1 gene:ENSG00000221680 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408753 ncrna:miRNA chromosome:GRCh37:1:193105633:193105713:1 gene:ENSG00000221680 gene_biotype:miRNA transcript_biotype:miRNA	chr1	193105633	193105713	+	ENSG00000221680	ENST00000408753	NA	NA	CDC73	NA	chr1:193095633-193115713	inner
CUST_50422_PI429285431	1.7620953	A	1.8755734	A	0.924356901327668	0	lncRNA	54126-1_{1..1848}	hg19_lincRNAsTranscripts_TCONS_l2_00030165 range=chrX:26177618-26180485 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030165 range=chrX:26177618-26180485 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 26177618	 26179465	+	NA	NA	NA	NA	MAGEB6	NA	chrX:26178643-26190485	inter
CUST_20782_PI429285431	4.352206	P	4.164452	P	1.13898914683257	0	lncRNA	22415-1_{1..689}	lnc-PITPNC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PITPNC1-1:1	chr17	 65241606	 65242294	+	lnc-PITPNC1-1	lnc-PITPNC1-1:1	ENSG00000266473.1	RP11-401F2.3	HELZ	NA	chr17:65231606-65241319	inter
CUST_24757_PI429285431	0.91983986	A	1.014973	A	0.936185846960572	0	lncRNA	26301-1_{1..378}	lnc-C10orf105-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf105-1:1	chr10	 73271535	 73271912	-	lnc-C10orf105-1	lnc-C10orf105-1:1	ENSG00000223817.1	CDH23-AS1	CDH23	NA	chr10:73261535-73281630	inner
CUST_51489_PI429285431	0.92295396	A	0.91656727	A	1.00443672943548	0	lncRNA	55065-1_{1..1666}	hg19_lincRNAsTranscripts_TCONS_l2_00010194 range=chr16:56135024-56146690 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010194 range=chr16:56135024-56146690 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 56135024	 56136689	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28266_PI429285431	1.0109472	A	2.544248	A	0.345486010747787	0	lncRNA	29901-1_{1..512}	n325558|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256182|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256182|-1.0446000|-0.1213396	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325558|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256182|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256182|-1.0446000|-0.1213396	chr17	 28256792	 28257303	+	NA	NA	NA	NA	EFCAB5	NA	chr17:28256874-28267715	inner
CUST_997_PI429285431	3.6984367	P	4.056684	P	0.780111745624801	0	lncRNA	986-1_{1..797}	"transcript_id ""ENST00000436841.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436841.1"" | genecode_v17"	chr2	105760571	105761367	+	ENSG00000226508.1	ENST00000436841.1	AC104655.3	AC104655.3-001	NA	NA	NA	inter
CUST_23912_PI429285431	8.215378	P	8.220898	P	0.996181138034387	0	lncRNA	25469-1_{1..436}	lnc-LRP11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRP11-1:1	chr6	150119057	150119492	-	lnc-LRP11-1	lnc-LRP11-1:1	ENSG00000231760.1	RP11-350J20.5	PCMT1	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40chr6:150109057-150129308"	NA	inner
CUST_18138_PI429285431	6.3629403	P	6.469961	P	0.928503529906353	0	lncRNA	19873-1_{1..379}	lnc-LPA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LPA-1:1	chr6	161227975	161228353	-	lnc-LPA-1	lnc-LPA-1:1	XLOC_005905	linc-LPA-3	NA	NA	NA	inter
CUST_17877_PI429285431	1.1929497	A	1.8674955	A	0.626529436930285	0	lncRNA	19614-1_{1..338}	lnc-RNF152-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF152-3:2	chr18	 59274084	 59274421	-	lnc-RNF152-3	lnc-RNF152-3:2	XLOC_012861	linc-MC4R-1	NA	NA	NA	inter
CUST_3395_PI429285431	6.885655	P	7.0885105	P	0.868829202523732	0	lncRNA	3368-1_{1..243}	"transcript_id ""ENST00000452923.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452923.1"" | genecode_v17"	chr9	 37383175	 37383417	-	ENSG00000224648.1	ENST00000452923.1	RP11-397D12.4	RP11-397D12.4-001	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70"	NA	inter
CUST_6936_PI429285431	4.7583256	P	2.915221	A	3.5878127571065	0	lncRNA	6885-2_{3001..3714}	"transcript_id ""ENST00000436681.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436681.1"" | genecode_v17"	chr22	 21658280	 21658993	-	ENSG00000206142.5	ENST00000436681.1	FAM230C	FAM230C-003	RIMBP3B	NA	chr22:21645280-21674170	inter
CUST_46175_PI429285431	0.91662383	A	0.90518254	A	1.00796202759759	0	lncRNA	50422-1_{1..590}	"gi|341915653|ref|XR_132734.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 539 (LINC00539), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915653|ref|XR_132734.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 539 (LINC00539), misc_RNA"	NA	NA	NA	NA	NA	XR_132734.1	NA	NA	NA	NA	NA	Unknown
CUST_29766_PI429285431	5.1752424	P	4.2924247	P	1.84397321529979	0	lncRNA	31528-1_{1..803}	n333458|BC020901|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090289_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090289_06|-1.4196900|-0.4147777	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333458|BC020901|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090289_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090289_06|-1.4196900|-0.4147777	chr2	113125937	113126739	-	NA	NA	NA	NA	RGPD8	NA	chr2:113115937-113136740	inner
CUST_35963_PI429285431	6.5258236	P	6.45668	P	1.04909374490516	0	lncRNA	37314-1_{1..3000}	n344589|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_137|NULL|-1.3735600|-0.2460965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344589|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_137|NULL|-1.3735600|-0.2460965	chr1	  9208455	  9211454	-	NA	NA	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20"	NA	inter
CUST_27423_PI429285431	0.9740418	A	0.9235093	A	1.0356471115578	0	lncRNA	28988-1_{1..699}	n324593|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039859|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039859|-0.5372530|-0.3159015	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324593|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039859|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039859|-0.5372530|-0.3159015	chr6	 11525568	 11526266	+	NA	NA	NA	NA	TMEM170B	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60chr6:11538511-11583757"	NA	inner
CUST_26846_PI429285431	0.917025	A	0.92043996	A	0.997635729405072	0	lncRNA	28360-1_{1..628}	n323918|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055668|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055668|-0.9623560|-0.2270872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323918|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055668|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055668|-0.9623560|-0.2270872	chrX	  5581461	  5582088	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20251_PI429285431	1.0635233	A	1.6065172	A	0.686345117624238	0	lncRNA	21894-1_{1..278}	lnc-AC107021.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC107021.1-1:3	chr3	145785901	145786178	+	lnc-AC107021.1-1	lnc-AC107021.1-1:3	ENSG00000243415.2	RP11-274H2.2	PLOD2	NA	chr3:145787227-145796044	inter
CUST_52231_PI429285431	4.2768497	P	3.035983	A	2.36340471341118	0	lncRNA	55743-1_{1..747}	hg19_lincRNAsTranscripts_TCONS_00030034 range=chr7_gl000195_random:46400-86697 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00030034 range=chr7_gl000195_random:46400-86697 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7_gl000195_random	    46400	    47146	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10733_PI429285431	4.1769013	P	4.038852	P	1.10041621231812	0	lncRNA	12271-1_{1..1278}	lnc-OLIG3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OLIG3-1:1	chr6	137994292	137995569	-	lnc-OLIG3-1	lnc-OLIG3-1:1	XLOC_005847	linc-OLIG3-3	NA	NA	NA	inter
CUST_23422_PI429285431	6.584834	P	6.097997	P	1.4013691092634	0	lncRNA	24990-1_{1..391}	lnc-SLC39A11-1:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC39A11-1:15	chr17	 70427269	 70427659	-	lnc-SLC39A11-1	lnc-SLC39A11-1:15	ENSG00000227036.2	LINC00511	NA	NA	NA	inter
CUST_29802_PI429285431	4.4941397	P	5.47878	P	0.505351704371939	0	lncRNA	31565-1_{1..514}	n333511|BC037261|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000094773|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000094773|1.6500500|-0.0432746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333511|BC037261|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000094773|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000094773|1.6500500|-0.0432746	chr17	 65373435	 65373948	+	NA	NA	NA	NA	PITPNC1	NA	chr17:65373924-65383949	inner
CUST_38650_PI429285431	8.243049	P	7.9595404	P	1.21715137104868	0	lncRNA	39653-1_{1..1186}	n383897|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xif.3||1.0943500|-0.1321088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n383897|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xif.3||1.0943500|-0.1321088	chr20	 37049238	 37050423	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40281_PI429285431	1.5571265	A	1.6515875	A	0.936622110024408	0	lncRNA	41089-1_{1..3000}	n408227|NR_028388|lncRNA|Homosapiens||RefGeneNoncode|NR_028388||3.3356000|-0.2502145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408227|NR_028388|lncRNA|Homosapiens||RefGeneNoncode|NR_028388||3.3356000|-0.2502145	chr16	 31191430	 31194429	+	NA	NA	NA	NA	FUS	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr16:31191431-31206192"	NA	inner
CUST_51533_PI429285431	0.90979093	A	0.9056817	A	1.00285236145264	0	lncRNA	55098-9_{24001..25893}	hg19_lincRNAsTranscripts_TCONS_l2_00011139 range=chr17:20432533-20460098 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011139 range=chr17:20432533-20460098 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 20456533	 20458425	-	NA	NA	NA	NA	CDRT15L2	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70chr17:20422533-20470098"	NA	inter
CUST_12811_PI429285431	3.3414426	A	3.6069999	A	0.831877325976205	0	lncRNA	14440-1_{1..613}	lnc-VRK2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VRK2-2:1	chr2	 57952830	 57953442	+	lnc-VRK2-2	lnc-VRK2-2:1	XLOC_001484	linc-VRK2-1	NA	NA	NA	inter
CUST_4170_PI429285431	4.666771	P	4.4835033	P	1.1354527721071	0	lncRNA	4128-1_{1..605}	"transcript_id ""ENST00000542689.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000542689.1"" | genecode_v17"	chr12	 15154767	 15155371	+	ENSG00000255727.1	ENST00000542689.1	RP11-508P1.2	RP11-508P1.2-001	NA	NA	NA	inter
CUST_1318_PI429285431	8.61851	P	8.169008	P	1.36556879838745	0	lncRNA	1307-1_{1..1216}	"transcript_id ""ENST00000432368.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000432368.2"" | genecode_v17"	chr3	 24535578	 24536793	+	ENSG00000228791.2	ENST00000432368.2	THRB-AS1	THRB-AS1-001	THRB	NA	chr3:24525578-24536313	inner
LNCA_21_P0001001	2.591676	A	0.9217713	A	3.18193573918267	0	lncRNA	ENST00000412512	NA	NA	NA	NA	KCNC4	"potassium voltage-gated channel, Shaw-related subfamily, member 4"	ENST00000412512	NA	GO:0005244|GO:0031594|GO:0005886|GO:0005267|GO:0007268|GO:0046928|GO:0055085|GO:0005249|GO:0008076|GO:0043679|GO:0016021|GO:0006813|GO:0071805|GO:0006811	"BROAD Institute lincRNA (XLOC_000341), lincRNA [TCONS_00000272]"	chr1:110825171-110825230	hs|1p13.3	Agilent_HUMAN_G3V2	ENST00000412512	ENST00000412512	chr1	110825171	110825230	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35774_PI429285431	1.0647249	A	0.89002454	A	1.12872994932016	0	lncRNA	37190-1_{1..3000}	n344460|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_8|NULL|-1.3082100|-0.3363473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344460|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_8|NULL|-1.3082100|-0.3363473	chr7	 30423845	 30426844	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13728_PI429285431	1.1140994	A	1.125808	A	0.99191706097738	0	lncRNA	15368-1_{1..524}	lnc-DHX36-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX36-2:1	chr3	153697719	153698242	-	lnc-DHX36-2	lnc-DHX36-2:1	XLOC_003293	linc-TMEM14E-3	NA	NA	NA	inter
CUST_43374_PI429285431	1.554601	A	2.605053	A	0.482816873017939	0	lncRNA	48189-2_{3001..6000}	"gi|297747267|ref|NR_033711.1| Homo sapiens TP73 antisense RNA 1 (TP73-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|297747267|ref|NR_033711.1| Homo sapiens TP73 antisense RNA 1 (TP73-AS1), transcript variant 1, non-coding RNA"	Chr1	  3655548	  3658547	-	57212	NR_033711.1	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50"	NA	inter
CUST_13748_PI429285431	0.9234875	A	1.1304505	A	0.866359075146131	0	lncRNA	15392-1_{1..503}	lnc-HEATR2-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HEATR2-3:8	chr7	   564491	   564993	+	lnc-HEATR2-3	lnc-HEATR2-3:8	XLOC_005958	linc-HEATR2-2	PDGFA	NA	chr7:554491-559481	inter
CUST_36149_PI429285431	3.927182	P	3.7685435	P	1.1162332293568	0	lncRNA	37424-1_{1..1747}	n344711|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_260|NULL|-1.3848500|-0.3110823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344711|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_260|NULL|-1.3848500|-0.3110823	chrX	119370759	119372505	-	NA	NA	NA	NA	ZBTB33	NA	chrX:119384607-119389160	inter
CUST_36834_PI429285431	1.216542	A	0.99753296	A	1.16393382764744	0	lncRNA	37999-2_{3001..3422}	n345307|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_856|NULL|-1.3929100|-0.3403179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345307|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_856|NULL|-1.3929100|-0.3403179	chr15	 64765012	 64765433	-	NA	NA	NA	NA	ZNF609	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20chr15:64791619-64794651"	NA	inter
CUST_17068_PI429285431	2.736351	A	2.184267	A	1.4662021233889	0	lncRNA	18777-1_{1..2100}	lnc-DRD5-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DRD5-3:1	chr4	 10072875	 10074974	+	lnc-DRD5-3	lnc-DRD5-3:1	XLOC_003449	linc-CPEB2-16	WDR1	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70chr4:10075963-10083254"	NA	inter
CUST_46338_PI429285431	1.2172651	A	0.9026848	A	1.24364980568779	0	lncRNA	50564-1_{1..895}	"gi|345842383|ref|NR_045122.1| Homo sapiens uncharacterized LOC100506321 (LOC100506321), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|345842383|ref|NR_045122.1| Homo sapiens uncharacterized LOC100506321 (LOC100506321), non-coding RNA"	Chr14	 65556636	 65557530	+	100506321	NR_045122.1	NA	NA	NA	"hg19_refFlat_MAX:range=chr14:65550898-655690575'pad=0,hg19_refFlat_MAX:range=chr14:65550898-655690575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MAX:range=chr14:65544130-655690575'pad=0,hg19_refFlat_MAX:range=chr14:65544130-655690575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MAX:range=chr14:65472922-655690575'pad=0,hg19_refFlat_MAX:range=chr14:65472922-655690575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MAX:range=chr14:65543194-655690575'pad=0,hg19_refFlat_MAX:range=chr14:65543194-655690575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80"	NA	inter
CUST_27122_PI429285431	3.4041839	P	3.7471836	P	0.788400337999503	0	lncRNA	28656-1_{1..837}	n324236|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327606|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327606|-1.0972100|-0.3804432	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324236|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327606|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327606|-1.0972100|-0.3804432	chr7	 17381015	 17381851	+	NA	NA	NA	NA	AHR	NA	chr7:17371015-17385775	inner
CUST_21099_PI429285431	1.1748621	A	0.89701104	A	1.21238764892351	0	lncRNA	22724-1_{1..1638}	lnc-PRDM13-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRDM13-2:1	chr6	 99878589	 99880226	+	lnc-PRDM13-2	lnc-PRDM13-2:1	ENSG00000228506.1	RP11-98I9.4	USP45	NA	chr6:99880182-99889249	inter
CUST_12_PI429201921	5.8223324	P	6.095504	P	0.827498384210075	0	lncRNA	13-1_{1..818}	TC15002131.hg.1	TCONS_l2_00009427-XLOC_l2_004612 // Broad TUCP // linc-ARHGAP11A-1 chr15:+:32892387-32893206 // chr15 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr15:+:32892387-32893206	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00009427-XLOC_l2_004612	linc-ARHGAP11A-1	chr15	 32892387	 32893206	+	NA	NA	NA	NA	EVX1	NA	chr7:27282164-27286192	Unknown
CUST_12256_PI429285431	0.9179459	A	0.9041146	A	1.00963323031295	0	lncRNA	13862-1_{1..517}	lnc-ZFP42-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP42-2:6	chr4	188626118	188626634	+	lnc-ZFP42-2	lnc-ZFP42-2:6	XLOC_003829	linc-ZFP42-3	NA	NA	NA	inter
CUST_17421_PI429285431	0.90431297	A	0.8985681	A	1.00398997930035	0	lncRNA	19145-2_{3001..4087}	lnc-NCOA3-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NCOA3-7:2	chr20	 46590007	 46591093	+	lnc-NCOA3-7	lnc-NCOA3-7:2	XLOC_013545	linc-ARFGEF2-10	NA	"hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70"	NA	inter
CUST_28074_PI429285431	1.2397254	A	1.2492839	A	0.993396452558547	0	lncRNA	29693-1_{1..384}	n325341|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326759|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326759|-1.0422300|-0.2662329	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325341|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326759|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326759|-1.0422300|-0.2662329	chr2	 37824979	 37825362	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46966_PI429285431	3.1038814	P	1.6282867	A	2.78098256513794	0	lncRNA	51071-1_{1..3000}	"gi|221219005|ref|NR_026659.1| Homo sapiens cysteine and histidine-rich domain (CHORD) containing 1 pseudogene (LOC727896), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|221219005|ref|NR_026659.1| Homo sapiens cysteine and histidine-rich domain (CHORD) containing 1 pseudogene (LOC727896), non-coding RNA"	Chr18	  2943210	  2946209	-	727896	NR_026659.1	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-20.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50"	NA	inter
CUST_14740_PI429285431	1.0330068	A	2.128121	A	0.468099068741699	0	lncRNA	16404-1_{1..270}	lnc-AIFM2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AIFM2-1:3	chr10	 71767213	 71767482	-	lnc-AIFM2-1	lnc-AIFM2-1:3	XLOC_008844	linc-NEUROG3	NA	NA	NA	inter
CUST_42035_PI429285431	3.3585792	P	3.1957612	P	1.11947165527681	0	lncRNA	43910-1_{1..71}	ENST00000581943 ncrna:miRNA chromosome:GRCh37:20:59053169:59053239:1 gene:ENSG00000266140 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581943 ncrna:miRNA chromosome:GRCh37:20:59053169:59053239:1 gene:ENSG00000266140 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 59053169	 59053239	+	ENSG00000266140	ENST00000581943	NA	NA	NA	NA	NA	inter
CUST_4003_PI429285431	3.543699	P	3.7448266	P	0.869870413112796	0	lncRNA	3964-1_{1..664}	"transcript_id ""ENST00000567742.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567742.1"" | genecode_v17"	chr11	 69282366	 69283029	+	ENSG00000261347.1	ENST00000567742.1	AP000439.5	AP000439.5-001	NA	NA	NA	inter
CUST_21654_PI429285431	2.1471994	A	1.0080787	A	2.20246745322462	0	lncRNA	23265-2_{3001..4488}	lnc-SUSD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SUSD1-1:1	chr9	114801963	114803450	-	lnc-SUSD1-1	lnc-SUSD1-1:1	ENSG00000259953.1	RP11-4O1.2	SUSD1	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80chr9:114803061-114810010"	NA	inter
CUST_46525_PI429285431	5.9881797	P	5.5079737	P	1.39494283367328	0	lncRNA	50715-1_{1..1558}	"gi|397139594|ref|XR_110593.2| PREDICTED: Homo sapiens uncharacterized LOC643696 (LOC643696), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139594|ref|XR_110593.2| PREDICTED: Homo sapiens uncharacterized LOC643696 (LOC643696), misc_RNA"	Chr15	 82932329	 82933886	-	643696	XR_110593.3	NA	NA	NA	NA	NA	inter
LNCA_21_P0003286	10.496034	P	10.03687	P	1.37474496238748	0	lncRNA	TCONS_00007181	NA	NA	NA	NA	XLOC_003149	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003149), lincRNA [TCONS_00007181]"	chr3:64928246-64928187	hs|3p14.1	Agilent_HUMAN_G3V2	TCONS_00007181	TCONS_00007181	chr3	 64928187	 64928246	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42293_PI429285431	12.891899	P	12.723472	P	1.12383247883348	0	lncRNA	44908-1_{1..78}	ENST00000363260 ncrna:snoRNA chromosome:GRCh37:7:64792309:64792386:1 gene:ENSG00000200130 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363260 ncrna:snoRNA chromosome:GRCh37:7:64792309:64792386:1 gene:ENSG00000200130 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 64792309	 64792386	+	ENSG00000200130	ENST00000363260	NA	NA	NA	NA	NA	inter
CUST_23535_PI429285431	0.91561025	A	0.92139995	A	0.995994927550502	0	lncRNA	25102-1_{1..618}	lnc-PSMB4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PSMB4-1:1	chr1	151320108	151320725	+	lnc-PSMB4-1	lnc-PSMB4-1:1	ENSG00000237976.1	RP11-126K1.6	RFX5	NA	chr1:151313116-151319769	inter
CUST_19534_PI429285431	4.058833	P	4.068181	P	0.993541407107798	0	lncRNA	21190-1_{1..792}	lnc-KTN1-AS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KTN1-AS1-1:1	chr14	 56263323	 56264114	-	lnc-KTN1-AS1-1	lnc-KTN1-AS1-1:1	ENSG00000258791.2	LINC00520	NA	NA	NA	inter
CUST_359_PI429201921	0.92323905	A	0.9190764	A	1.00288949567954	0	lncRNA	231-2_{3001..6000}	TC09002365.hg.1	TCONS_l2_00029157-XLOC_l2_015088 // Broad TUCP // linc-WASH1-2 chr9:-:43948-52582 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:-:43948-52582	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00029157-XLOC_l2_015088	linc-WASH1-2	chr9	    43948	    52582	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4781_PI429285431	1.774873	A	2.9976265	P	0.428464178854281	0	lncRNA	4725-1_{1..530}	"transcript_id ""ENST00000556537.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556537.1"" | genecode_v17"	chr14	 39644089	 39644618	-	ENSG00000259083.1	ENST00000556537.1	RP11-407N17.4	RP11-407N17.4-001	TRAPPC6B	NA	chr14:39634089-39639634	inner
CUST_32149_PI429285431	1.6136675	A	0.93955046	A	1.59561992054302	0	lncRNA	33849-1_{1..1208}	n338716|BC039553|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1136|NULL|-1.0969500|-0.2196376	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n338716|BC039553|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1136|NULL|-1.0969500|-0.2196376	chr13	 48870648	 48871855	-	NA	NA	NA	NA	RB1	NA	chr13:48877883-48887797	inter
CUST_33184_PI429285431	1.0833961	A	0.92661697	A	1.11479553557438	0	lncRNA	34776-1_{1..3000}	n339874|AK024979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2322|NULL|-1.0942200|-0.3760119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339874|AK024979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2322|NULL|-1.0942200|-0.3760119	chr4	 16876090	 16879089	-	NA	NA	NA	NA	LDB2	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00chr4:16866090-16889230"	NA	inner
CUST_23254_PI429285431	7.7988987	P	7.6832924	P	1.08343026699839	0	lncRNA	24826-1_{1..517}	lnc-ALOX12B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALOX12B-2:1	chr17	  7960890	  7961406	-	lnc-ALOX12B-2	lnc-ALOX12B-2:1	ENSG00000263427.1	RP11-599B13.3	ALOX15B	NA	chr17:7950890-7952452	inter
CUST_24595_PI429285431	1.4166214	A	2.0970647	A	0.623973515310632	0	lncRNA	26144-1_{1..516}	lnc-SLC45A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC45A1-1:1	chr1	  8494693	  8495208	+	lnc-SLC45A1-1	lnc-SLC45A1-1:1	ENSG00000232912.1	RP5-1115A15.1	RERE	NA	chr1:8484693-8504898	inner
CUST_35268_PI429285431	0.92571247	A	0.92396986	A	1.00120861499546	0	lncRNA	36669-1_{1..2150}	n342278|D64108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4770|NULL|6.1208400|-0.3311907	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342278|D64108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4770|NULL|6.1208400|-0.3311907	chr22	 38914953	 38917102	-	NA	NA	NA	NA	DMC1	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-25.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-23.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40chr22:38914954-38966189"	NA	inner
CUST_16252_PI429285431	1.892307	A	1.1565357	A	1.66528753485956	0	lncRNA	17956-1_{1..825}	lnc-C3orf23-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C3orf23-1:1	chr3	 44470558	 44471382	+	lnc-C3orf23-1	lnc-C3orf23-1:1	XLOC_002630	linc-ZNF167	NA	NA	NA	inter
CUST_11507_PI429285431	1.6415622	A	2.237815	A	0.661469802027672	0	lncRNA	13076-1_{1..299}	lnc-ZNF366-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF366-2:2	chr5	 71956394	 71956692	-	lnc-ZNF366-2	lnc-ZNF366-2:2	XLOC_004874	linc-ZNF366-5	NA	NA	NA	inter
CUST_27506_PI429285431	0.9145632	A	0.9195231	A	0.996567962250669	0	lncRNA	29077-1_{1..819}	n324685|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320628|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320628|-0.8417580|-0.2845704	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324685|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320628|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320628|-0.8417580|-0.2845704	chr22	 26402555	 26403373	-	NA	NA	NA	NA	MYO18B	"hg19_refFlat_MYO18B:range=chr22:26157060-264236445'pad=0,hg19_refFlat_MYO18B:range=chr22:26157060-264236445'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70chr22:26392555-26427007"	NA	inner
CUST_50911_PI429285431	1.201671	A	1.0769843	A	1.09027094043397	0	lncRNA	54552-1_{1..908}	hg19_lincRNAsTranscripts_TCONS_l2_00006115 range=chr12:9549677-9559096 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006115 range=chr12:9549677-9559096 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  9549677	  9550584	-	NA	NA	NA	NA	LOC728715	NA	chr12:9549658-9555094	inter
CUST_16550_PI429285431	1.4556388	A	1.663382	A	0.86589068051382	0	lncRNA	18251-1_{1..510}	lnc-CD1B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD1B-2:2	chr1	158110288	158110797	-	lnc-CD1B-2	lnc-CD1B-2:2	XLOC_001054	linc-CD5L-1	NA	NA	NA	inter
CUST_3921_PI429285431	1.1880549	A	0.955965	A	1.1745351588368	0	lncRNA	3891-1_{1..533}	"transcript_id ""ENST00000530946.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530946.1"" | genecode_v17"	chr11	 41881393	 41881925	+	ENSG00000255279.1	ENST00000530946.1	RP11-375D13.4	RP11-375D13.4-003	NA	NA	NA	inter
CUST_31245_PI429285431	3.293755	P	3.2981417	P	0.996963989292839	0	lncRNA	33035-1_{1..993}	n337697|BC052811|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|79|NULL|-1.0900900|-0.2447401	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n337697|BC052811|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|79|NULL|-1.0900900|-0.2447401	chr15	 38363827	 38364819	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39182_PI429285431	3.672275	P	2.878265	A	1.73388714537758	0	lncRNA	40157-1_{1..510}	n385924|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vjn.1||-1.2869800|-0.2937171	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385924|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vjn.1||-1.2869800|-0.2937171	chr1	   763063	   763572	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42807_PI429285431	6.1167173	P	6.387127	P	0.829084067097046	0	lncRNA	45806-1_{1..96}	ENST00000515969 ncrna:snoRNA chromosome:GRCh37:21:43302314:43302409:1 gene:ENSG00000251778 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515969 ncrna:snoRNA chromosome:GRCh37:21:43302314:43302409:1 gene:ENSG00000251778 gene_biotype:snoRNA transcript_biotype:snoRNA	chr21	 43302314	 43302409	+	ENSG00000251778	ENST00000515969	NA	NA	PRDM15	NA	chr21:43292314-43299591	inter
CUST_6686_PI429285431	0.9155985	A	1.0985869	A	0.880876456792081	0	lncRNA	6635-1_{1..357}	"transcript_id ""ENST00000450129.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450129.1"" | genecode_v17"	chr20	 34660600	 34660956	+	ENSG00000234139.2	ENST00000450129.1	RP4-550H1.4	RP4-550H1.4-001	NA	NA	NA	inter
LNCA_21_P0007081	2.21482	A	1.0548776	A	2.23448506192711	0	lncRNA	TCONS_00018828	NA	NA	NA	NA	XLOC_008636	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008636), lincRNA [TCONS_00018828]"	chr10:120001250-120004911	hs|10q26.11	Agilent_HUMAN_G3V2	TCONS_00018828	TCONS_00018828	chr10	120001250	120004911	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7450_PI429285431	0.9912097	A	1.136211	A	0.904378562633035	0	lncRNA	9093-1_{1..1915}	lnc-BOLL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BOLL-1:1	chr2	198570741	198572655	-	lnc-BOLL-1	lnc-BOLL-1:1	ENSG00000247626	ENST00000499940	MARS2	"hg19_refFlat_MARS2:range=chr2:198570130-1985719115'pad=0,hg19_refFlat_MARS2:range=chr2:198570130-1985719115'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.60chr2:198570028-198573114"	NA	inner
CUST_34964_PI429285431	3.2677145	P	1.9617705	A	2.47245454858489	0	lncRNA	36381-1_{1..2367}	n341884|AL117598|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4364|NULL|-1.2015500|-0.3731374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341884|AL117598|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4364|NULL|-1.2015500|-0.3731374	chr12	 32534219	 32536585	+	NA	NA	NA	NA	BICD1	NA	chr12:32524219-32531141	inter
CUST_222_PI429285431	0.9231499	A	0.91670376	A	1.00447812071515	0	lncRNA	212-1_{1..1129}	"transcript_id ""ENST00000416581.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000416581.1"" | genecode_v17"	chr1	 46912345	 46913473	-	ENSG00000224863.1	ENST00000416581.1	RP5-1109J22.2	RP5-1109J22.2-001	LOC729041	NA	chr1:46903225-46911374	inter
CUST_52212_PI429285431	2.3139746	A	1.5709864	A	1.67363879639025	0	lncRNA	55728-2_{3001..5671}	hg19_lincRNAsTranscripts_TCONS_00029939 range=chr6_apd_hap1:2336693-2342363 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00029939 range=chr6_apd_hap1:2336693-2342363 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6_apd_hap1	  2339693	  2342363	+	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.71;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-27.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40"	NA	Unknown
CUST_4684_PI429285431	1.4807816	A	1.6824363	A	0.869552657154623	0	lncRNA	4631-1_{1..618}	"transcript_id ""ENST00000598478.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598478.1"" | genecode_v17"	chr13	106358978	106359595	+	ENSG00000226620.2	ENST00000598478.1	LINC00343	LINC00343-007	NA	NA	NA	inter
LNCA_21_P0014545	1.0131385	A	1.009444	A	1.00256411399023	0	lncRNA	ENST00000555481	XR_110261	XR_110261	NA	NA	LOC100507513	NA	ENST00000555481	THC2621281	NA	"PREDICTED: Homo sapiens hypothetical LOC100507513 (LOC100507513), miscRNA [XR_110261]"	chr14:21342526-21342467	hs|14q11.2	Agilent_HUMAN_G3V2	ENST00000555481	ENST00000555481	chr14	 21342467	 21342526	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34496_PI429285431	1.8733103	A	2.6408992	A	0.587398342567189	0	lncRNA	35963-1_{1..3000}	n341373|AK126189|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3842|NULL|-1.1555200|-0.2789436	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341373|AK126189|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3842|NULL|-1.1555200|-0.2789436	chr7	156462734	156465733	-	NA	NA	NA	NA	LMBR1	NA	chr7:156473570-156476021	inner
CUST_21766_PI429285431	4.9970818	P	5.0405602	P	0.970312659174909	0	lncRNA	23376-1_{1..558}	lnc-AC012123.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC012123.1.1-2:1	chr18	 30537736	 30538293	+	lnc-AC012123.1.1-2	lnc-AC012123.1.1-2:1	ENSG00000263450.1	RP11-680N20.1	C18orf34	NA	chr18:30527736-30547962	inner
CUST_40269_PI429285431	1.6014287	A	1.9121343	A	0.806247339579314	0	lncRNA	41079-1_{1..375}	n408211|NR_028357|lncRNA|Homosapiens||RefGeneNoncode|NR_028357||1.5349200|-0.3474672	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408211|NR_028357|lncRNA|Homosapiens||RefGeneNoncode|NR_028357||1.5349200|-0.3474672	chr3	 99904667	 99905041	+	NA	NA	NA	NA	C3orf26	NA	chr3:99894667-99897476	inter
CUST_29696_PI429285431	6.3975034	P	5.972752	P	1.34234117546581	0	lncRNA	31458-1_{1..526}	n333360|BC001436|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086006|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086006|2.4143900|-0.0746823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333360|BC001436|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086006|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086006|2.4143900|-0.0746823	chr13	 45556198	 45556723	-	NA	NA	NA	NA	NUFIP1	NA	chr13:45546198-45563613	inner
CUST_23599_PI429285431	1.0807029	A	1.2807376	A	0.870529624885436	0	lncRNA	25165-1_{1..505}	lnc-MMP21-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MMP21-1:1	chr10	127439009	127439513	-	lnc-MMP21-1	lnc-MMP21-1:1	ENSG00000236991.1	RP11-383C5.7	C10orf137	"hg19_refFlat_C10orf137:range=chr10:127408377-1274520415'pad=0,hg19_refFlat_C10orf137:range=chr10:127408377-1274520415'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10chr10:127429009-127449035"	NA	inner
CUST_34049_PI429285431	0.9254422	A	0.9673346	A	0.971379940917178	0	lncRNA	35580-1_{1..2041}	n340868|CR591483|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3333|NULL|-1.0142400|-0.3336313	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340868|CR591483|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3333|NULL|-1.0142400|-0.3336313	chr6	 21521973	 21524013	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6128_PI429285431	1.08636	A	0.9194196	A	1.12267504164482	0	lncRNA	6054-1_{1..2598}	"transcript_id ""ENST00000579458.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000579458.1"" | genecode_v17"	chr18	 24267585	 24270182	-	ENSG00000265369.1	ENST00000579458.1	RP11-17A19.1	RP11-17A19.1-001	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10"	NA	inter
LNCA_21_P0007340	2.6609142	A	2.8101294	A	0.90174085992798	0	lncRNA	ENST00000528366	XR_109039	XR_109039	NA	Hs.673491	XLOC_009416	NA	ENST00000528366	THC2630381	NA	"PREDICTED: Homo sapiens hypothetical LOC100507144 (LOC100507144), miscRNA [XR_109039]"	chr11:35157982-35157923	hs|11p13	Agilent_HUMAN_G3V2	ENST00000528366	ENST00000528366	chr11	 35157923	 35157982	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007064	1.0842564	A	1.0316527	A	1.03713500243405	0	lncRNA	TCONS_00018740	NA	NA	NA	NA	XLOC_008495	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008495), lincRNA [TCONS_00018740]"	chr10:63255537-63255596	hs|10q21.2	Agilent_HUMAN_G3V2	TCONS_00018740	TCONS_00018740	chr10	 63255537	 63255596	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19967_PI429285431	1.5717821	A	1.3872895	A	1.13641722173416	0	lncRNA	21621-1_{1..576}	lnc-CSRNP3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CSRNP3-2:2	chr2	166803707	166804282	+	lnc-CSRNP3-2	lnc-CSRNP3-2:2	ENSG00000224490.1	AC010127.5	TTC21B	NA	chr2:166793707-166810348	inner
CUST_39151_PI429285431	1.9711181	A	1.647463	A	1.25149723187173	0	lncRNA	40128-1_{1..1861}	n385794|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ehp.2||7.0920100|-0.1728481	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385794|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ehp.2||7.0920100|-0.1728481	chrX	100740407	100742267	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_24930_PI429285431	3.072692	P	3.1970806	P	0.917392742876618	0	lncRNA	26470-1_{1..575}	lnc-TRPT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRPT1-2:1	chr11	 63886614	 63887188	-	lnc-TRPT1-2	lnc-TRPT1-2:1	ENSG00000256341.1	RP11-21A7A.3	MACROD1	NA	chr11:63876614-63896682	inner
CUST_4133_PI429285431	1.9223897	A	0.9284946	A	1.99155469271364	0	lncRNA	4092-1_{1..2417}	"transcript_id ""ENST00000515614.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515614.2"" | genecode_v17"	chr12	  1609691	  1612107	-	ENSG00000249628.2	ENST00000515614.2	RP3-340I3.1	RP3-340I3.1-001	ERC1	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00chr12:1599691-1605099"	NA	inter
CUST_41663_PI429285431	0.91953	A	0.92380965	A	0.99703796816689	0	lncRNA	43087-1_{1..68}	ENST00000585213 ncrna:miRNA chromosome:GRCh37:1:233759898:233759965:1 gene:ENSG00000265744 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585213 ncrna:miRNA chromosome:GRCh37:1:233759898:233759965:1 gene:ENSG00000265744 gene_biotype:miRNA transcript_biotype:miRNA	chr1	233759898	233759965	+	ENSG00000265744	ENST00000585213	NA	NA	KCNK1	NA	chr1:233749898-233769965	inner
CUST_23747_PI429285431	5.8121986	P	6.200303	P	0.764132962231883	0	lncRNA	25310-1_{1..447}	lnc-C2CD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C2CD2-1:1	chr21	 43297643	 43298089	-	lnc-C2CD2-1	lnc-C2CD2-1:1	ENSG00000227698.1	AP001619.2	PRDM15	NA	chr21:43287643-43299591	inner
CUST_3826_PI429285431	1.9151686	A	2.4890814	A	0.671792316396391	0	lncRNA	3793-1_{1..624}	"transcript_id ""ENST00000597502.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597502.1"" | genecode_v17"	chr10	127386292	127386915	+	ENSG00000228021.2	ENST00000597502.1	RP11-383C5.3	RP11-383C5.3-004	NA	NA	NA	inter
CUST_18536_PI429285431	5.43865	P	5.6708374	P	0.851343114686991	0	lncRNA	20248-1_{1..462}	lnc-ZFP14-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ZFP14-1:4	chr19	 36813032	 36813493	-	lnc-ZFP14-1	lnc-ZFP14-1:4	ENSG00000232677	AC092296.1	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00"	NA	inter
CUST_4711_PI429285431	2.6566722	A	1.309653	A	2.54385986803234	0	lncRNA	4658-1_{1..768}	"transcript_id ""ENST00000432001.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432001.1"" | genecode_v17"	chr14	 19650018	 19650785	+	ENSG00000225210.5	ENST00000432001.1	AL589743.1	AL589743.1-005	NA	NA	NA	inter
CUST_33373_PI429285431	1.9766932	A	1.3757689	A	1.51668796078613	0	lncRNA	34952-1_{1..2031}	n340090|AL832537|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2545|NULL|-0.6598070|-0.2344293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340090|AL832537|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2545|NULL|-0.6598070|-0.2344293	chr10	 80017842	 80019872	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29774_PI429285431	1.938215	A	0.9023563	A	2.0503336527863	0	lncRNA	31537-1_{1..568}	n333471|BC025789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091129|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091129|2.7329800|0.0181011	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333471|BC025789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091129|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091129|2.7329800|0.0181011	chr2	  5832804	  5833371	+	NA	NA	NA	NA	SOX11	NA	chr2:5832799-5841517	inner
CUST_23413_PI429285431	5.6058445	P	5.6971426	P	0.938677770940148	0	lncRNA	24981-1_{1..717}	lnc-CHAD-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHAD-3:2	chr17	 48615288	 48616004	-	lnc-CHAD-3	lnc-CHAD-3:2	ENSG00000250286.1	RP11-94C24.8	SPATA20	"hg19_refFlat_EPN3:range=chr17:48613918-486195185'pad=0,hg19_refFlat_EPN3:range=chr17:48613918-486195185'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10chr17:48624562-48625801"	NA	inner
CUST_39715_PI429285431	3.50483	P	3.4806457	P	1.01690457152883	0	lncRNA	40649-2_{3001..4108}	n405626|NR_002789|lncRNA|Homosapiens||RefGeneNoncode|NR_002789||3.3045700|-0.3419804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405626|NR_002789|lncRNA|Homosapiens||RefGeneNoncode|NR_002789||3.3045700|-0.3419804	chr7	 64313070	 64314177	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50944_PI429285431	4.8755445	P	5.516616	P	0.641236520896623	0	lncRNA	54586-1_{1..916}	hg19_lincRNAsTranscripts_TCONS_l2_00006253 range=chr12:54472673-54474374 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006253 range=chr12:54472673-54474374 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 54472673	 54473588	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39469_PI429285431	5.1430516	P	5.1735253	P	0.979098763775297	0	lncRNA	40412-1_{1..812}	n387030|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wnj.1||-0.6096530|-0.1963323	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387030|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wnj.1||-0.6096530|-0.1963323	chr17	 54961462	 54962273	-	NA	NA	NA	NA	TRIM25	NA	chr17:54965270-54972274	inter
LNCA_21_P0011917	4.2951612	P	4.570866	P	0.82604667087544	0	lncRNA	TCONS_l2_00014569	NA	NA	NA	NA	XLOC_l2_008014	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008014), lincRNA [TCONS_l2_00014569]"	chr2:51452688-51448903	hs|2p16.3	Agilent_HUMAN_G3V2	TCONS_l2_00014569	TCONS_l2_00014569	chr2	 51448903	 51452688	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_182_PI429201921	1.0143358	A	0.9069754	A	1.07725545202988	0	lncRNA	150-1_{1..3000}	TC03002804.hg.1	TCONS_00005392-XLOC_003045 // Rinn lincRNAs // linc-ATP2B2-2 chr3:-:10801168-10805877 // chr3 // 100 // 100 // 0 // --- // 0 /// TCONS_00005741-XLOC_003045 // Rinn lincRNAs // linc-ATP2B2-2 chr3:-:10803390-10805866 // chr3 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr3:-:10801168-10805877	NA	Affy_HUMAN_HTA2.0	TCONS_00005392-XLOC_003045	linc-ATP2B2-2	chr3	 10801168	 10805877	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50446_PI429285431	0.90796894	A	0.8970383	A	1.00760531691912	0	lncRNA	54149-1_{1..210}	hg19_lincRNAsTranscripts_TCONS_l2_00030817 range=chrX:55681154-55683398 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030817 range=chrX:55681154-55683398 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 55681154	 55681363	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5556_PI429285431	0.92251354	A	0.9061273	A	1.01142282390663	0	lncRNA	5486-1_{1..427}	"transcript_id ""ENST00000562614.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562614.1"" | genecode_v17"	chr16	 54401279	 54401705	-	ENSG00000261803.1	ENST00000562614.1	RP11-434E6.2	RP11-434E6.2-002	NA	NA	NA	inter
CUST_12087_PI429285431	1.7366201	A	1.7494841	A	0.991122990058867	0	lncRNA	13681-1_{1..565}	lnc-RP3-368B9.1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP3-368B9.1.1-4:1	chr4	  3643739	  3644303	+	lnc-RP3-368B9.1.1-4	lnc-RP3-368B9.1.1-4:1	XLOC_003430	linc-ADRA2C-2	NA	NA	NA	inter
CUST_51777_PI429285431	0.91733897	A	1.9478103	A	0.489550186099873	0	lncRNA	55328-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00012283 range=chr19:8784389-8790416 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012283 range=chr19:8784389-8790416 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	  8784389	  8787388	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40"	NA	inter
CUST_13268_PI429285431	1.8376372	A	2.3057628	A	0.722903209096094	0	lncRNA	14900-1_{1..214}	lnc-PDE3B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE3B-1:1	chr11	 14969371	 14969584	+	lnc-PDE3B-1	lnc-PDE3B-1:1	XLOC_009072	linc-CALCB-1	NA	NA	NA	inter
LNCA_21_P0002413	4.834451	P	4.9674053	P	0.911962053125646	0	lncRNA	ENST00000421581	NA	NA	NA	NA	XLOC_002018	NA	ENST00000421581	NA	NA	"BROAD Institute lincRNA (XLOC_002018), lincRNA [TCONS_00004179]"	chr2:23243190-23241894	hs|2p24.1	Agilent_HUMAN_G3V2	ENST00000421581	ENST00000421581	chr2	 23241894	 23243190	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48928_PI429285431	0.91903037	A	0.9229058	A	0.997317361345342	0	lncRNA	52770-1_{1..1468}	hg19_lincRNAsTranscripts_TCONS_l2_00019558 range=chr3:140311062-140355193 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019558 range=chr3:140311062-140355193 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	140311062	140312529	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005747	3.1927881	P	3.0433648	A	1.10912602364698	0	lncRNA	ENST00000523572	NA	NA	NA	NA	XLOC_006892	NA	ENST00000523572	NA	NA	"BROAD Institute lincRNA (XLOC_006892), lincRNA [TCONS_00014814]"	chr8:103541851-103541910	hs|8q22.3	Agilent_HUMAN_G3V2	ENST00000523572	ENST00000523572	chr8	103541851	103541910	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42568_PI429285431	6.4521804	P	6.5410933	P	0.940230965471997	0	lncRNA	45401-1_{1..133}	ENST00000384792 ncrna:snoRNA chromosome:GRCh37:1:93306276:93306408:1 gene:ENSG00000207523 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384792 ncrna:snoRNA chromosome:GRCh37:1:93306276:93306408:1 gene:ENSG00000207523 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 93306276	 93306408	+	ENSG00000207523	ENST00000384792	NA	NA	FAM69A	NA	chr1:93307721-93316408	inner
CUST_45633_PI429285431	9.281239	P	9.332712	P	0.964950605633741	0	lncRNA	50016-1_{1..3000}	"gi|228480308|ref|NR_027512.1| Homo sapiens BEN domain containing 3 pseudogene (LOC650623), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|228480308|ref|NR_027512.1| Homo sapiens BEN domain containing 3 pseudogene (LOC650623), non-coding RNA"	Chr10	 81442731	 81445730	+	650623	NR_027512.1	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
CUST_50998_PI429285431	0.92549443	A	1.2922643	A	0.77551690225377	0	lncRNA	54643-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00006748 range=chr13:25114931-25171738 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006748 range=chr13:25114931-25171738 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 25114931	 25117930	+	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60"	NA	inter
CUST_23273_PI429285431	11.903373	P	11.858121	P	1.03186340232927	0	lncRNA	24844-1_{1..362}	lnc-BAIAP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BAIAP2-1:1	chr17	 79109846	 79110207	+	lnc-BAIAP2-1	lnc-BAIAP2-1:1	ENSG00000263167.1	RP11-149I9.2	AATK	NA	chr17:79099846-79120056	inner
CUST_25877_PI429285431	0.9099783	A	0.9019289	A	1.00559501286114	0	lncRNA	27397-1_{1..594}	lnc-IL18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL18-1:1	chr11	112043278	112043871	-	lnc-IL18-1	lnc-IL18-1:1	ENSG00000254638.1	RP11-356J5.4	BCO2	"hg19_refFlat_TEX12:range=chr11:112039992-1120426395'pad=0,hg19_refFlat_TEX12:range=chr11:112039992-1120426395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60chr11:112046208-112053329"	NA	inner
CUST_40622_PI429285431	1.7361867	A	1.0749837	A	1.58140073467605	0	lncRNA	41363-2_{3001..4515}	n410104|NR_036535|lncRNA|Homosapiens||RefGeneNoncode|NR_036535||6.5720200|-0.3756361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410104|NR_036535|lncRNA|Homosapiens||RefGeneNoncode|NR_036535||6.5720200|-0.3756361	chr5	138612440	138613954	+	NA	NA	NA	NA	MATR3	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80chr5:138609441-138667366"	NA	inner
LNCA_21_P0012695	3.893157	P	2.5296204	A	2.57315185414302	0	lncRNA	TCONS_l2_00021387	NA	NA	NA	NA	XLOC_l2_011350	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011350), lincRNA [TCONS_l2_00021387]"	chr4:172042769-172042710	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_l2_00021387	TCONS_l2_00021387	chr4	172042710	172042769	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28618_PI429285431	0.9162669	A	1.2172297	A	0.811710510723932	0	lncRNA	30302-1_{1..322}	n325986|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047811|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047811|-1.0661700|-0.2668591	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325986|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047811|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047811|-1.0661700|-0.2668591	chr10	 45630881	 45631202	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33614_PI429285431	1.530809	A	0.9036838	A	1.54448429384559	0	lncRNA	35179-1_{1..243}	n340373|AF056439|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2834|NULL|-1.3635500|-0.1984580	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340373|AF056439|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2834|NULL|-1.3635500|-0.1984580	chr5	 10252244	 10252486	-	NA	NA	NA	NA	CCT5	NA	chr5:10250282-10262487	inner
CUST_31133_PI429285431	0.9279773	A	0.90875053	A	1.01341618144887	0	lncRNA	32928-1_{1..268}	n337458|DQ993536|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394698|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394698|-1.3562000|-0.3450377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337458|DQ993536|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394698|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394698|-1.3562000|-0.3450377	chr2	166060336	166060603	-	NA	NA	NA	NA	SCN3A	NA	chr2:166050336-166060577	inner
LNCA_21_P0001456	0.9587306	A	0.9189924	A	1.02792727594925	0	lncRNA	ENST00000443930	NA	AK054708	NA	Hs.555112	XLOC_000675	NA	ENST00000443930	THC2628642	NA	"BROAD Institute lincRNA (XLOC_000675), lincRNA [TCONS_00001373]"	chr1:1946084-1946025	hs|1p36.33	Agilent_HUMAN_G3V2	ENST00000443930	ENST00000443930	chr1	  1946025	  1946084	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26793_PI429285431	5.826168	P	6.4102097	P	0.667092302765912	0	lncRNA	28301-1_{1..220}	n323857|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058868|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058868|-1.2030800|-0.1674546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323857|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058868|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058868|-1.2030800|-0.1674546	chrX	 70856490	 70856709	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32143_PI429285431	0.9190248	A	1.1140994	A	0.873527725696152	0	lncRNA	33843-1_{1..2472}	n338710|AK123146|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1130|NULL|0.1494610|-0.3123490	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338710|AK123146|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1130|NULL|0.1494610|-0.3123490	chr13	 48504289	 48506760	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20"	NA	inter
CUST_27669_PI429285431	0.9244414	A	0.92017263	A	1.00296326771352	0	lncRNA	29247-1_{1..482}	n324876|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170923|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170923|-0.9743900|-0.3131295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324876|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170923|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170923|-0.9743900|-0.3131295	chr21	 22041163	 22041644	+	NA	NA	NA	NA	NA	"hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.80;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.61;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-22.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_44503_PI429285431	3.2355127	A	3.4500008	P	0.861851909519627	0	lncRNA	49102-2_{3001..4245}	"gi|224282143|ref|NR_027026.1| Homo sapiens glucuronidase, beta pseudogene 1 (GUSBP1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224282143|ref|NR_027026.1| Homo sapiens glucuronidase, beta pseudogene 1 (GUSBP1), transcript variant 1, non-coding RNA"	Chr5	 21462589	 21463833	+	728411	NR_027026.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00"	NA	inter
CUST_10792_PI429285431	0.9276931	A	0.9133155	A	1.01001561679128	0	lncRNA	12329-1_{1..1258}	lnc-ZNF675-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF675-1:1	chr19	 23748272	 23749529	-	lnc-ZNF675-1	lnc-ZNF675-1:1	XLOC_013278	linc-ZNF91-1	NA	NA	NA	inter
LNCA_21_P0005043	0.9407837	A	0.91698986	A	1.01662938736231	0	lncRNA	TCONS_00012230	NA	NA	NA	NA	XLOC_005787	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005787), lincRNA [TCONS_00012230]"	chr6:96367568-96367509	hs|6q16.1	Agilent_HUMAN_G3V2	TCONS_00012230	TCONS_00012230	chr6	 96367509	 96367568	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44076_PI429285431	6.270898	P	6.464529	P	0.874402238817331	0	lncRNA	48744-2_{3001..3434}	"gi|381214355|ref|NR_046476.1| Homo sapiens DIS3 mitotic control homolog (S. cerevisiae)-like 2 (DIS3L2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|381214355|ref|NR_046476.1| Homo sapiens DIS3 mitotic control homolog (S. cerevisiae)-like 2 (DIS3L2), transcript variant 4, non-coding RNA"	Chr2	232829293	232829726	+	129563	NR_046476.1	NA	NA	NA	NA	NA	inter
CUST_40000_PI429285431	0.92011774	A	0.906628	A	1.00939422657501	0	lncRNA	40864-2_{3001..3723}	n407125|NR_024872|lncRNA|Homosapiens||RefGeneNoncode|NR_024872||0.2543690|-0.2383501	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407125|NR_024872|lncRNA|Homosapiens||RefGeneNoncode|NR_024872||0.2543690|-0.2383501	chr9	 37880571	 37881293	-	NA	NA	NA	NA	MCART1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PAICS:range=chr4:57302479-573257045'pad=0,hg19_refFlat_PAICS:range=chr4:57302479-573257045'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30chr9:37877572-37904350"	NA	inter
CUST_11154_PI429285431	1.4362676	A	0.909023	A	1.4411740702546	0	lncRNA	12712-1_{1..1269}	lnc-CREG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CREG1-1:1	chr1	167502500	167503768	-	lnc-CREG1-1	lnc-CREG1-1:1	XLOC_001081	linc-CD247	CREG1	NA	chr1:167510250-167512878	inter
CUST_28653_PI429285431	0.9230667	A	0.90682214	A	1.01132350191165	0	lncRNA	30344-2_{3001..3958}	n326031|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047376|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047376|0.0883255|-0.3108961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326031|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047376|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047376|0.0883255|-0.3108961	chr10	 29121122	 29122079	-	NA	NA	NA	NA	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80"	NA	inter
CUST_18496_PI429285431	1.4981309	A	1.2240288	A	1.20924125120416	0	lncRNA	20213-1_{1..555}	lnc-RP11-181C3.1.1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-181C3.1.1-4:3	chr12	 98150216	 98150770	-	lnc-RP11-181C3.1.1-4	lnc-RP11-181C3.1.1-4:3	ENSG00000257501	RP11-1016B18.1	NA	NA	NA	inter
CUST_29794_PI429285431	1.3249156	A	1.7276356	A	0.756430793400554	0	lncRNA	31557-1_{1..502}	n333502|BC033876|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000093257|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000093257|-1.0994500|-0.1829072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n333502|BC033876|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000093257|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000093257|-1.0994500|-0.1829072	chr4	103421974	103422475	-	NA	NA	NA	NA	NFKB1	NA	chr4:103411974-103432476	inter
CUST_28539_PI429285431	2.988312	P	3.3687172	P	0.768221795080372	0	lncRNA	30211-1_{1..722}	n325888|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050240|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050240|-1.0783900|-0.4246362	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325888|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050240|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050240|-1.0783900|-0.4246362	chr10	109621323	109622044	-	NA	NA	NA	NA	LOC100128304	NA	chr10:109673555-109675061	inter
CUST_50892_PI429285431	4.850661	P	5.357355	P	0.703833457045853	0	lncRNA	54535-1_{1..675}	hg19_lincRNAsTranscripts_TCONS_l2_00005845 range=chr12:97211610-97269279 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005845 range=chr12:97211610-97269279 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 97211610	 97212284	+	NA	NA	NA	NA	C12orf63	NA	chr12:97201610-97216602	inter
CUST_11330_PI429285431	0.9242067	A	1.366637	A	0.735893909724376	0	lncRNA	12893-1_{1..261}	lnc-CTSO-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTSO-1:6	chr4	157064904	157065164	-	lnc-CTSO-1	lnc-CTSO-1:6	XLOC_004134	linc-CTSO-1	NA	NA	NA	inter
CUST_14818_PI429285431	9.273197	P	10.35672	P	0.471875116296909	0	lncRNA	16478-1_{1..679}	lnc-DMRTA1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRTA1-5:2	chr9	 23946499	 23947177	+	lnc-DMRTA1-5	lnc-DMRTA1-5:2	XLOC_007302	linc-IFT74-5	NA	NA	NA	inter
CUST_2847_PI429285431	3.7275708	P	3.9083014	P	0.882256096894255	0	lncRNA	2830-1_{1..928}	"transcript_id ""ENST00000587736.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587736.1"" | genecode_v17"	chr7	 63348578	 63349505	-	ENSG00000236299.3	ENST00000587736.1	RP11-340I6.7	RP11-340I6.7-003	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
LNCA_21_P0001066	4.6935654	P	3.9871671	P	1.63172541210188	0	lncRNA	XR_110838	XR_110838	XR_110838	NA	Hs.553851	LOC100506161	uncharacterized LOC100506161	ENST00000441835	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506161 (LOC100506161), miscRNA [XR_110838]"	chr1:222765583-222765642	hs|1q41	Agilent_HUMAN_G3V2	XR_110838	XR_110838	chr1	222765583	222765642	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1972_PI429285431	4.6268654	P	4.485798	P	1.10272067890251	0	lncRNA	1963-2_{3001..3601}	"transcript_id ""ENST00000503929.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503929.1"" | genecode_v17"	chr4	171964759	171965359	+	ENSG00000248872.1	ENST00000503929.1	RP11-344G13.1	RP11-344G13.1-001	NA	NA	NA	inter
CUST_42732_PI429285431	5.7274423	P	6.4398394	P	0.610305247459837	0	lncRNA	45679-1_{1..149}	ENST00000384300 ncrna:snoRNA chromosome:GRCh37:8:23663742:23663890:-1 gene:ENSG00000207027 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384300 ncrna:snoRNA chromosome:GRCh37:8:23663742:23663890:-1 gene:ENSG00000207027 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	 23663742	 23663890	-	ENSG00000207027	ENST00000384300	NA	NA	NA	NA	NA	inter
CUST_32643_PI429285431	3.3905933	P	3.5375175	P	0.90317396216763	0	lncRNA	34299-2_{3001..6000}	n339265|D86965|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1697|NULL|6.3038200|-0.3014843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339265|D86965|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1697|NULL|6.3038200|-0.3014843	chr3	 17202898	 17205897	-	NA	NA	NA	NA	TBC1D5	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30chr3:17198654-17784240"	NA	inner
CUST_7498_PI429285431	1.9026937	A	1.5516151	A	1.27551388152724	0	lncRNA	9138-1_{1..2376}	lnc-ZCCHC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZCCHC2-1:1	chr18	 60251679	 60254054	+	lnc-ZCCHC2-1	lnc-ZCCHC2-1:1	ENSG00000249546	ENST00000505963	ZCCHC2	NA	chr18:60241679-60245818	inter
CUST_40545_PI429285431	0.9038454	A	0.91020685	A	0.995600286092598	0	lncRNA	41303-1_{1..1400}	n409670|NR_034070|lncRNA|Homosapiens||RefGeneNoncode|NR_034070||5.9997000|-0.1719990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409670|NR_034070|lncRNA|Homosapiens||RefGeneNoncode|NR_034070||5.9997000|-0.1719990	chr11	104757417	104758816	-	NA	NA	NA	NA	CASP12	NA	chr11:104756445-104769397	inter
LNCA_21_P0009925	0.9243706	A	0.9165132	A	1.0054611928992	0	lncRNA	THC2616018	NA	NA	NA	NA	XLOC_013434	NA	NA	THC2616018	NA	"BROAD Institute lincRNA (XLOC_013434), lincRNA [TCONS_00028090]"	chr20:001815708-001815767	hs|20p13	Agilent_HUMAN_G3V2	THC2616018	THC2616018	chr20	  1815708	  1815767	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25612_PI429285431	0.94992995	A	0.94809043	A	1.00127587133377	0	lncRNA	27141-1_{1..859}	lnc-SH3TC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SH3TC1-2:1	chr4	  8068787	  8069645	+	lnc-SH3TC1-2	lnc-SH3TC1-2:1	ENSG00000251460.1	RP11-1258F18.1	ABLIM2	NA	chr4:8058787-8079451	inner
CUST_47494_PI429285431	5.157671	P	5.459883	P	0.811007971467939	0	lncRNA	51511-1_{1..3000}	"gi|209180487|ref|NR_002727.2| Homo sapiens RFPL1 antisense RNA 1 (RFPL1-AS1), antisense RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|209180487|ref|NR_002727.2| Homo sapiens RFPL1 antisense RNA 1 (RFPL1-AS1), antisense RNA"	NA	NA	NA	NA	NA	NR_002727.2	NA	NA	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RFPL3:range=chr22:32754059-327568195'pad=0,hg19_refFlat_RFPL3:range=chr22:32754059-327568195'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_RFPL2:range=chr22:32586759-325984385'pad=0,hg19_refFlat_RFPL2:range=chr22:32586759-325984385'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RFPL2:range=chr22:32586759-325892615'pad=0,hg19_refFlat_RFPL2:range=chr22:32586759-325892615'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.52;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RFPL2:range=chr22:32586759-325891745'pad=0,hg19_refFlat_RFPL2:range=chr22:32586759-325891745'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_RFPL1:range=chr22:29834781-298381115'pad=0,hg19_refFlat_RFPL1:range=chr22:29834781-298381115'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RFPL3:range=chr22:32754146-327568195'pad=0,hg19_refFlat_RFPL3:range=chr22:32754146-327568195'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90"	NA	Unknown
CUST_2914_PI429285431	0.9169278	A	0.9140253	A	1.00201388483916	0	lncRNA	2895-1_{1..435}	"transcript_id ""ENST00000427030.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427030.1"" | genecode_v17"	chr7	117638912	117639346	-	ENSG00000234826.1	ENST00000427030.1	AC003084.2	AC003084.2-001	NA	NA	NA	inter
CUST_31865_PI429285431	11.700851	P	11.305877	P	1.31491906274807	0	lncRNA	33597-1_{1..1016}	n338416|BC000005|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|813|NULL|5.4056300|-0.0723767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338416|BC000005|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|813|NULL|5.4056300|-0.0723767	chr14	 77494428	 77495443	+	NA	NA	NA	NA	IRF2BPL	NA	chr14:77490886-77495034	inner
CUST_19207_PI429285431	0.9100649	A	0.91895354	A	0.993857805122813	0	lncRNA	20877-1_{1..394}	lnc-SHANK2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHANK2-2:1	chr11	 70204442	 70204835	-	lnc-SHANK2-2	lnc-SHANK2-2:1	ENSG00000254495.1	AP000487.4	PPFIA1	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-20.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10chr11:70194442-70214783"	NA	inner
CUST_1759_PI429285431	6.5611115	P	6.7009544	P	0.907617983564349	0	lncRNA	1745-1_{1..449}	"transcript_id ""ENST00000509098.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509098.1"" | genecode_v17"	chr4	 43982023	 43982471	-	ENSG00000250863.1	ENST00000509098.1	RP11-663P9.1	RP11-663P9.1-001	NA	NA	NA	inter
LNCA_33_P3383071	2.5086405	A	1.4994061	A	2.01284265442161	0	lncRNA	XR_133081	XR_133081	XR_133081	100653108	Hs.540272	LOC100653108	uncharacterized LOC100653108	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100653108 (LOC100653108), miscRNA [XR_133081]"	chr15:62552001-62552060	hs|15q22.2	Agilent_HUMAN_G3V2	XR_133081	XR_133081	chr15	 62552001	 62552060	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34628_PI429285431	1.3279109	A	1.0899023	A	1.17936362250436	0	lncRNA	36081-1_{1..2341}	n341520|X13294|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3990|NULL|8.0301200|-0.3338459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341520|X13294|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3990|NULL|8.0301200|-0.3338459	chr8	 67476953	 67479293	-	NA	NA	NA	NA	MYBL1	NA	chr8:67474410-67525480	inner
CUST_3513_PI429285431	0.8938904	A	0.8945626	A	0.9995341749954	0	lncRNA	3484-1_{1..207}	"transcript_id ""ENST00000415302.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415302.1"" | genecode_v17"	chr9	110189521	110189727	-	ENSG00000226825.1	ENST00000415302.1	RP11-363D24.1	RP11-363D24.1-002	NA	NA	NA	inter
CUST_31016_PI429285431	7.9389896	P	8.403251	P	0.724842071367622	0	lncRNA	32805-1_{1..236}	n337218|BC113041|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386744|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386744|1.4071300|-0.4833121	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337218|BC113041|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386744|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386744|1.4071300|-0.4833121	chrX	101396053	101396288	-	NA	NA	NA	NA	TCEAL6	NA	chrX:101394933-101397388	inner
CUST_22550_PI429285431	0.9071263	A	1.6797132	A	0.585366910176845	0	lncRNA	24137-1_{1..569}	lnc-STRN3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STRN3-1:4	chr14	 31358590	 31359158	-	lnc-STRN3-1	lnc-STRN3-1:4	ENSG00000258525.1	RP11-829H16.3	STRN3	"hg19_refFlat_COCH:range=chr14:31344145-313589975'pad=0,hg19_refFlat_COCH:range=chr14:31344145-313589975'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30chr14:31363005-31368879"	NA	inter
LNCA_21_P0014380	0.92642385	A	0.98774195	A	0.958388100089409	0	lncRNA	XR_109525	XR_109525	XR_109525	NA	NA	LOC100507486	uncharacterized LOC100507486	NA	THC2542065	NA	"PREDICTED: Homo sapiens hypothetical LOC100507486 (LOC100507486), miscRNA [XR_109525]"	chr19:38219939-38219880	hs|19q13.12	Agilent_HUMAN_G3V2	XR_109525	XR_109525	chr19	 38219880	 38219939	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19274_PI429285431	1.7586997	A	2.1560743	A	0.759238680760305	0	lncRNA	20942-1_{1..621}	lnc-DHRS7B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHRS7B-4:1	chr17	 20882997	 20883617	+	lnc-DHRS7B-4	lnc-DHRS7B-4:1	ENSG00000264660.1	RP11-381P6.1	NA	NA	NA	inter
CUST_13478_PI429285431	0.9214321	A	1.0357056	A	0.923847416774206	0	lncRNA	15116-1_{1..352}	lnc-FOXA2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXA2-2:2	chr20	 22559148	 22559499	-	lnc-FOXA2-2	lnc-FOXA2-2:2	XLOC_013684	linc-NKX2-2-6	FOXA2	NA	chr20:22561642-22566101	inter
CUST_51899_PI429285431	2.577085	A	2.7475066	A	0.888582971862543	0	lncRNA	55444-1_{1..2690}	hg19_lincRNAsTranscripts_TCONS_l2_00013242 range=chr19:56123598-56126400 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013242 range=chr19:56123598-56126400 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 56123598	 56126287	-	NA	NA	NA	NA	ZNF784	"hg19_refFlat_ZNF213:range=chr16:3187282-31913485'pad=0,hg19_refFlat_ZNF213:range=chr16:3187282-31913485'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF205:range=chr16:3163432-31703265'pad=0,hg19_refFlat_ZNF205:range=chr16:3163432-31703265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF865:range=chr19:56124985-561281645'pad=0,hg19_refFlat_ZNF865:range=chr19:56124985-561281645'pad=0 3'pad=0 strand=+ repeatMasking=none,-115.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70chr19:56132107-56135941"	NA	inner
CUST_42238_PI429285431	11.228647	P	11.451823	P	0.856677438968496	0	lncRNA	44373-1_{1..68}	ENST00000387377 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:4402:4469:1 gene:ENSG00000210112 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000387377 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:4402:4469:1 gene:ENSG00000210112 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	chrMT	     4402	     4469	+	ENSG00000210112	ENST00000387377	NA	NA	NA	NA	NA	Unknown
CUST_4453_PI429285431	0.9233352	A	1.1527257	A	0.852995183266093	0	lncRNA	4403-1_{1..1745}	"transcript_id ""ENST00000535976.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535976.1"" | genecode_v17"	chr12	122880153	122881897	+	ENSG00000257097.1	ENST00000535976.1	RP11-450K4.1	RP11-450K4.1-001	CLIP1	NA	chr12:122870153-122895404	inner
LNCA_21_P0013284	0.9296696	A	0.92865616	A	1.00070270986364	0	lncRNA	TCONS_l2_00026405	NA	NA	NA	NA	XLOC_l2_013730	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013730), lincRNA [TCONS_l2_00026405]"	chr7:17523058-17522327	hs|7p21.1	Agilent_HUMAN_G3V2	TCONS_l2_00026405	TCONS_l2_00026405	chr7	 17522327	 17523058	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40624_PI429285431	3.3204587	P	2.9082234	A	1.33074606478052	0	lncRNA	41365-1_{1..1964}	n410107|NR_036538|lncRNA|Homosapiens||RefGeneNoncode|NR_036538||3.6857800|-0.3665629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410107|NR_036538|lncRNA|Homosapiens||RefGeneNoncode|NR_036538||3.6857800|-0.3665629	chr3	149689065	149691028	+	NA	NA	NA	NA	RNF13	NA	chr3:149679065-149679926	inter
CUST_51621_PI429285431	4.331655	P	4.250367	P	1.05796213970016	0	lncRNA	55190-1_{1..1029}	hg19_lincRNAsTranscripts_TCONS_l2_00010778 range=chr17:40699471-40700585 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010778 range=chr17:40699471-40700585 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 40699471	 40700499	+	NA	NA	NA	NA	HSD17B1	NA	chr17:40703984-40707232	inter
CUST_23176_PI429285431	1.1992952	A	0.87938976	A	1.24824873100873	0	lncRNA	24748-1_{1..2790}	lnc-SLC25A19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC25A19-1:1	chr17	 73367028	 73369817	-	lnc-SLC25A19-1	lnc-SLC25A19-1:1	ENSG00000264853.1	RP11-16C1.2	GRB2	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90chr17:73357028-73379817"	NA	inner
CUST_51293_PI429285431	5.177604	P	3.2695272	P	3.75308457127614	0	lncRNA	54898-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008986 range=chr15:32808411-32825872 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008986 range=chr15:32808411-32825872 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 32808411	 32811410	-	NA	NA	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60"	NA	inter
CUST_41158_PI429285431	0.9267741	A	0.9182086	A	1.00595481199544	0	lncRNA	41968-1_{1..84}	ENST00000585288 ncrna:miRNA supercontig:GRCh37:GL000230.1:19097:19180:1 gene:ENSG00000264001 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585288 ncrna:miRNA supercontig:GRCh37:GL000230.1:19097:19180:1 gene:ENSG00000264001 gene_biotype:miRNA transcript_biotype:miRNA	chrGL000230.1	    19097	    19180	+	ENSG00000264001	ENST00000585288	NA	NA	NA	"hg19_refFlat_ZNF717:range=chr3:75786029-758325135'pad=0,hg19_refFlat_ZNF717:range=chr3:75786029-758325135'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	Unknown
CUST_25380_PI429285431	1.0040107	A	1.0226027	A	0.987195689351294	0	lncRNA	26911-1_{1..374}	lnc-SLC35E3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC35E3-1:1	chr12	 69222246	 69222619	+	lnc-SLC35E3-1	lnc-SLC35E3-1:1	ENSG00000256325.1	RP11-611O2.1	MDM2	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-21.60chr12:69212246-69232333"	NA	inner
CUST_46520_PI429285431	4.179141	P	4.6903048	P	0.701656194201038	0	lncRNA	50711-1_{1..2922}	"gi|299782538|ref|NR_033833.1| Homo sapiens uncharacterized LOC283688 (LOC283688), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|299782538|ref|NR_033833.1| Homo sapiens uncharacterized LOC283688 (LOC283688), non-coding RNA"	Chr15	 80555410	 80558331	-	283688	NR_033833.1	NA	NA	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30"	NA	inter
CUST_30417_PI429285431	4.604214	P	5.0329304	P	0.742922487109531	0	lncRNA	32197-1_{1..945}	n335551|BX248757|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267067|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267067|6.5941500|-0.0807987	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335551|BX248757|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267067|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267067|6.5941500|-0.0807987	chr14	105155974	105156918	+	NA	NA	NA	NA	INF2	NA	chr14:105155943-105182509	inner
CUST_34483_PI429285431	5.3825045	P	4.904569	P	1.39274921225486	0	lncRNA	35951-1_{1..1196}	n341360|CR612038|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3829|NULL|-1.0699000|-0.2416180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341360|CR612038|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3829|NULL|-1.0699000|-0.2416180	chr7	150419044	150420239	+	NA	NA	NA	NA	GIMAP1-GIMAP5	NA	chr7:150413645-150430240	inner
CUST_33185_PI429285431	0.987835	A	0.9491507	A	1.02717664124801	0	lncRNA	34776-2_{3001..3878}	n339874|AK024979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2322|NULL|-1.0942200|-0.3760119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339874|AK024979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2322|NULL|-1.0942200|-0.3760119	chr4	 16879090	 16879967	-	NA	NA	NA	NA	LDB2	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00chr4:16866090-16889230"	NA	inner
CUST_10185_PI429285431	0.9292337	A	1.3793708	A	0.731973284896079	0	lncRNA	11710-1_{1..321}	lnc-RP11-322L20.1.1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-322L20.1.1-7:1	chr14	 86798652	 86798972	+	lnc-RP11-322L20.1.1-7	lnc-RP11-322L20.1.1-7:1	XLOC_010892	linc-GPR65-5	NA	NA	NA	inter
CUST_51306_PI429285431	0.9104225	A	0.906713	A	1.00257453791175	0	lncRNA	54910-1_{1..527}	hg19_lincRNAsTranscripts_TCONS_l2_00009007 range=chr15:33598488-33602732 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009007 range=chr15:33598488-33602732 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 33598488	 33599014	-	NA	NA	NA	NA	RYR3	NA	chr15:33603177-33612732	inter
CUST_29025_PI429285431	1.5555811	A	2.4466667	A	0.539208221841694	0	lncRNA	30754-1_{1..319}	n326515|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030150|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030150|-1.4708200|-0.5930674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326515|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030150|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030150|-1.4708200|-0.5930674	chr1	 95748313	 95748631	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12275_PI429285431	1.0057796	A	1.3425535	A	0.79180994906033	0	lncRNA	13884-1_{1..483}	lnc-LSR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LSR-1:1	chr19	 35706538	 35707020	+	lnc-LSR-1	lnc-LSR-1:1	XLOC_013049	linc-LSR	FAM187B	NA	chr19:35715704-35716795	inter
CUST_21119_PI429285431	3.2805774	P	3.1175623	A	1.11962460716897	0	lncRNA	22745-1_{1..557}	lnc-TRAPPC2L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRAPPC2L-1:2	chr16	 88949923	 88950479	+	lnc-TRAPPC2L-1	lnc-TRAPPC2L-1:2	ENSG00000259881.1	RP11-830F9.5	CBFA2T3	"hg19_refFlat_CBFA2T3:range=chr16:88943384-889680325'pad=0,hg19_refFlat_CBFA2T3:range=chr16:88943384-889680325'pad=0 3'pad=0 strand=- repeatMasking=none,-111.40;hg19_refFlat_CBFA2T3:range=chr16:88943384-890432155'pad=0,hg19_refFlat_CBFA2T3:range=chr16:88943384-890432155'pad=0 3'pad=0 strand=- repeatMasking=none,-111.40chr16:88941263-88960123"	NA	inner
CUST_8508_PI429285431	0.958594	A	0.9893899	A	0.978880124084591	0	lncRNA	10071-1_{1..1145}	lnc-CALML6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALML6-2:1	chr1	  1817624	  1818768	+	lnc-CALML6-2	lnc-CALML6-2:1	ENSG00000248957	ENST00000514353	GNB1	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr1:1807624-1822526"	NA	inner
CUST_17319_PI429285431	0.99789166	A	1.9416668	A	0.519870738885677	0	lncRNA	19037-1_{1..412}	lnc-TMEM235-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM235-1:1	chr17	 76302016	 76302427	+	lnc-TMEM235-1	lnc-TMEM235-1:1	XLOC_012322	linc-PGS1-3	NA	NA	NA	inter
CUST_66_PI429201921	4.4050055	P	4.750531	P	0.787021252771927	0	lncRNA	68-1_{1..1944}	TC09002503.hg.1	TCONS_00015809-XLOC_007688 // Rinn lincRNAs // linc-CNTNAP3-3 chr9:-:39925025-39926970 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:-:39925025-39926970	NA	Affy_HUMAN_HTA2.0	TCONS_00015809-XLOC_007688	linc-CNTNAP3-3	chr9	 39925025	 39926970	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6160_PI429285431	0.91639304	A	1.065738	A	0.901659758497166	0	lncRNA	6086-1_{1..545}	"transcript_id ""ENST00000601523.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601523.1"" | genecode_v17"	chr18	 39093652	 39094196	-	ENSG00000267313.2	ENST00000601523.1	RP11-142I20.1	RP11-142I20.1-005	NA	NA	NA	inter
CUST_1144_PI429285431	3.4544203	A	4.040911	P	0.665960862535872	0	lncRNA	1133-1_{1..393}	"transcript_id ""ENST00000442706.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442706.1"" | genecode_v17"	chr2	155822025	155822417	-	ENSG00000230991.1	ENST00000442706.1	AC092625.1	AC092625.1-001	NA	NA	NA	inter
CUST_6561_PI429285431	15.335374	P	15.455696	P	0.919982293739729	0	lncRNA	6509-1_{1..279}	"transcript_id ""ENST00000562076.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562076.1"" | genecode_v17"	chr19	 51288983	 51289261	-	ENSG00000261341.1	ENST00000562076.1	CTD-2568A17.1	CTD-2568A17.1-001	ACPT	NA	chr19:51293672-51298481	inter
CUST_22479_PI429285431	0.9319142	A	1.2163471	A	0.821064292429772	0	lncRNA	24066-1_{1..594}	lnc-HJURP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HJURP-1:1	chr2	234863680	234864273	-	lnc-HJURP-1	lnc-HJURP-1:1	ENSG00000237581.1	AC005538.5	TRPM8	"hg19_refFlat_TRPM8:range=chr2:234835183-2349232565'pad=0,hg19_refFlat_TRPM8:range=chr2:234835183-2349232565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50chr2:234853680-234874079"	NA	inner
CUST_38566_PI429285431	4.848877	P	5.0559487	P	0.866293801695302	0	lncRNA	39578-1_{1..1831}	n383511|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002omc.1||0.4069130|-0.3014743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383511|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002omc.1||0.4069130|-0.3014743	chr19	 40129324	 40131154	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50"	NA	inter
CUST_40563_PI429285431	1.8512522	A	1.2096881	A	1.56001954037355	0	lncRNA	41320-1_{1..1614}	n409760|NR_034163|lncRNA|Homosapiens||RefGeneNoncode|NR_034163||2.2009300|-0.0933621	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409760|NR_034163|lncRNA|Homosapiens||RefGeneNoncode|NR_034163||2.2009300|-0.0933621	chr7	  5160940	  5162553	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45837_PI429285431	4.3473806	P	4.937475	P	0.664299438458631	0	lncRNA	50171-1_{1..2031}	"gi|386869325|ref|NR_048553.1| Homo sapiens chromosome 11 open reading frame 80 (C11orf80), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386869325|ref|NR_048553.1| Homo sapiens chromosome 11 open reading frame 80 (C11orf80), transcript variant 2, non-coding RNA"	Chr11	 66512207	 66514237	+	79703	NR_048553.1	NA	NA	NA	NA	NA	inter
CUST_13030_PI429285431	4.147682	A	3.0976171	A	2.07062299308483	0	lncRNA	14655-1_{1..695}	lnc-CD47-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD47-1:1	chr3	107758204	107758898	-	lnc-CD47-1	lnc-CD47-1:1	XLOC_003209	linc-CBLB-8	CD47	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60chr3:107761941-107768725"	NA	inter
CUST_2849_PI429285431	3.6461792	P	3.8258424	P	0.882909089099878	0	lncRNA	2832-1_{1..632}	"transcript_id ""ENST00000594855.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594855.1"" | genecode_v17"	chr7	 63348603	 63349234	-	ENSG00000236299.3	ENST00000594855.1	RP11-340I6.7	RP11-340I6.7-008	NA	NA	NA	inter
LNCA_21_P0002668	1.0341784	A	1.0289193	A	1.00365198263473	0	lncRNA	TCONS_00005194	NA	NA	NA	NA	XLOC_002197	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002197), lincRNA [TCONS_00005194]"	chr2:88436807-88436748	hs|2p11.2	Agilent_HUMAN_G3V2	TCONS_00005194	TCONS_00005194	chr2	 88436748	 88436807	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2610_PI429285431	2.1156244	A	2.5324872	A	0.7490516984866	0	lncRNA	2597-1_{1..597}	"transcript_id ""ENST00000415883.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415883.1"" | genecode_v17"	chr6	113852320	113852916	+	ENSG00000236347.1	ENST00000415883.1	RP11-346D19.1	RP11-346D19.1-001	NA	NA	NA	inter
CUST_29982_PI429285431	2.8866608	A	1.3566316	A	2.88791684159483	0	lncRNA	31748-1_{1..356}	n334248|S66432|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216129|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216129|1.5429300|-0.1819383	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334248|S66432|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216129|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216129|1.5429300|-0.1819383	chr11	118355619	118355974	+	NA	NA	NA	NA	MLL	NA	chr11:118345619-118370888	inner
LNCA_21_P0012757	1.0398779	A	1.0345943	A	1.00366902690374	0	lncRNA	ENST00000509968	XR_109806	XR_109806	NA	Hs.131412	XLOC_l2_010947	NA	ENST00000509968	THC2667886	NA	"PREDICTED: Homo sapiens hypothetical LOC100506154 (LOC100506154), miscRNA [XR_109806]"	chr4:174849779-174850418	hs|4q34.1	Agilent_HUMAN_G3V2	ENST00000509968	ENST00000509968	chr4	174849779	174850418	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10690_PI429285431	0.91657394	A	1.1560109	A	0.847075835799611	0	lncRNA	12224-1_{1..583}	lnc-CADM1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CADM1-4:2	chr11	115951606	115952188	-	lnc-CADM1-4	lnc-CADM1-4:2	XLOC_009564	linc-CADM1-1	NA	NA	NA	inter
CUST_51784_PI429285431	1.8694351	A	1.4274337	A	1.3584876028329	0	lncRNA	55333-1_{1..476}	hg19_lincRNAsTranscripts_TCONS_l2_00012302 range=chr19:10183639-10184193 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012302 range=chr19:10183639-10184193 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 10183639	 10184114	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9400_PI429285431	4.208196	P	4.2927	P	0.943108721910483	0	lncRNA	10903-1_{1..640}	lnc-C6orf192-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C6orf192-1:1	chr6	133134432	133135071	-	lnc-C6orf192-1	lnc-C6orf192-1:1	XLOC_005834	linc-C6orf192-1	RPS12	NA	chr6:133135708-133138703	inter
CUST_44704_PI429285431	4.1716566	P	2.008112	A	4.48014243525724	0	lncRNA	49261-1_{1..3000}	"gi|195222744|ref|NR_024053.1| Homo sapiens HLA complex group 18 (non-protein coding) (HCG18), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|195222744|ref|NR_024053.1| Homo sapiens HLA complex group 18 (non-protein coding) (HCG18), non-coding RNA"	NT_167245.1	  1548843	  1551842	-	414777	NR_024053.2	NA	NA	NA	NA	NA	Unknown
CUST_25317_PI429285431	0.91172224	A	0.90644956	A	1.0036614299938	0	lncRNA	26847-1_{1..649}	lnc-MAST2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAST2-1:1	chr1	 46513750	 46514398	+	lnc-MAST2-1	lnc-MAST2-1:1	ENSG00000226957.1	RP4-533D7.4	PIK3R3	NA	chr1:46505812-46524040	inner
CUST_27770_PI429285431	0.9254299	A	0.936632	A	0.99226536341107	0	lncRNA	29355-1_{1..426}	n324990|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079230|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079230|-1.2617700|-0.4963079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324990|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079230|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079230|-1.2617700|-0.4963079	chr20	 38183095	 38183520	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41273_PI429285431	0.89681727	A	0.89539164	A	1.00098865981726	0	lncRNA	42243-1_{1..74}	ENST00000577443 ncrna:miRNA chromosome:GRCh37:2:69330814:69330887:1 gene:ENSG00000266649 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577443 ncrna:miRNA chromosome:GRCh37:2:69330814:69330887:1 gene:ENSG00000266649 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 69330814	 69330887	+	ENSG00000266649	ENST00000577443	NA	NA	ANTXR1	NA	chr2:69320814-69340887	inner
CUST_14474_PI429285431	3.0020325	A	2.9536605	A	1.034097344651	0	lncRNA	16137-1_{1..1293}	lnc-DNAJB11-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAJB11-3:7	chr3	186168197	186169489	+	lnc-DNAJB11-3	lnc-DNAJB11-3:7	XLOC_002958	linc-DNAJB11-3	NA	NA	NA	inter
CUST_8355_PI429285431	3.955327	P	4.2403617	P	0.820721868400695	0	lncRNA	9934-1_{1..568}	lnc-CRYBA4-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:12	chr22	 27061421	 27061988	+	lnc-CRYBA4-1	lnc-CRYBA4-1:12	ENSG00000225783	XLOC_014192	NA	NA	NA	inter
CUST_38709_PI429285431	3.1310263	P	1.1883552	A	3.84416723536718	0	lncRNA	39703-2_{3001..3330}	n384140|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003akv.1||-0.3261600|-0.3463077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384140|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003akv.1||-0.3261600|-0.3463077	chr22	 31834222	 31834551	+	NA	NA	NA	NA	EIF4ENIF1	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70chr22:31835345-31844552"	NA	inter
CUST_50028_PI429285431	2.5881147	A	2.487101	A	1.07252680160891	0	lncRNA	53766-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00028126 range=chr8:23569205-23584509 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028126 range=chr8:23569205-23584509 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 23569205	 23572204	-	NA	NA	NA	NA	NKX2-6	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr8:23559964-23563922"	NA	inter
CUST_16907_PI429285431	5.911089	P	6.38518	P	0.719920247852372	0	lncRNA	18617-1_{1..349}	lnc-MAP1LC3B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP1LC3B-1:2	chr16	 87351463	 87351811	+	lnc-MAP1LC3B-1	lnc-MAP1LC3B-1:2	XLOC_011819	linc-MAP1LC3B-2	C16orf95	NA	chr16:87341463-87351026	inter
CUST_23005_PI429285431	8.339559	P	8.049724	P	1.22250045319392	0	lncRNA	24579-1_{1..1031}	lnc-GTF2E2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTF2E2-1:2	chr8	 30242660	 30243690	-	lnc-GTF2E2-1	lnc-GTF2E2-1:2	ENSG00000254109.1	CTD-3107M8.4	RBPMS	NA	chr8:30241944-30252809	inner
CUST_37129_PI429285431	3.2787895	P	3.0851653	A	1.14363303548127	0	lncRNA	38252-1_{1..1295}	n345570|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1119|NULL|-1.2771100|-0.2238070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345570|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1119|NULL|-1.2771100|-0.2238070	chr2	218820767	218822061	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48525_PI429285431	0.93331915	A	0.9257982	A	1.00522673726864	0	lncRNA	52375-1_{1..469}	hg19_lincRNAsTranscripts_TCONS_l2_00014508 range=chr2:35224082-35293597 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014508 range=chr2:35224082-35293597 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 35224082	 35224550	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5056_PI429285431	5.621148	P	6.1559606	P	0.690248331221824	0	lncRNA	4996-1_{1..327}	"transcript_id ""ENST00000560742.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560742.1"" | genecode_v17"	chr14	103587190	103587516	-	ENSG00000259717.1	ENST00000560742.1	LINC00677	LINC00677-001	TNFAIP2	NA	chr14:103592664-103599344	inter
CUST_27357_PI429285431	0.91600245	A	0.9032202	A	1.00889934635056	0	lncRNA	28920-1_{1..449}	n324519|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040501|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040501|-0.9843790|-0.3272528	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324519|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040501|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040501|-0.9843790|-0.3272528	chr6	 41215571	 41216019	-	NA	NA	NA	NA	TREML4	NA	chr6:41205571-41206120	inter
CUST_6182_PI429285431	0.9607966	A	2.1469219	A	0.439481609230882	0	lncRNA	6106-2_{3001..3188}	"transcript_id ""ENST00000578152.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000578152.1"" | genecode_v17"	chr18	 48921412	 48921599	+	ENSG00000227115.2	ENST00000578152.1	RP11-267C16.1	RP11-267C16.1-001	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_44946_PI429285431	6.637994	P	6.4059896	P	1.17446555314913	0	lncRNA	49458-1_{1..1176}	"gi|410170513|ref|XR_171098.1| PREDICTED: Homo sapiens uncharacterized LOC101060139 (LOC101060139), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170513|ref|XR_171098.1| PREDICTED: Homo sapiens uncharacterized LOC101060139 (LOC101060139), misc_RNA"	NA	NA	NA	NA	NA	XR_171098.1	NA	NA	NA	NA	NA	Unknown
CUST_9981_PI429285431	3.7847495	P	3.2740796	P	1.42471159160693	0	lncRNA	11505-1_{1..680}	lnc-AC092031.1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092031.1-1:7	chr7	 96285769	 96286448	-	lnc-AC092031.1-1	lnc-AC092031.1-1:7	XLOC_006529	linc-SLC25A13	NA	NA	NA	inter
CUST_17867_PI429285431	1.0938702	A	0.91301876	A	1.1335526803768	0	lncRNA	19604-1_{1..1038}	lnc-PITRM1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PITRM1-4:1	chr10	  3355990	  3357027	-	lnc-PITRM1-4	lnc-PITRM1-4:1	XLOC_008693	linc-PITRM1-5	NA	NA	NA	inter
CUST_40648_PI429285431	9.149967	P	9.246283	P	0.935418586440043	0	lncRNA	41387-1_{1..1794}	n410191|NR_036694|lncRNA|Homosapiens||RefGeneNoncode|NR_036694||14.2313000|-0.1055754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410191|NR_036694|lncRNA|Homosapiens||RefGeneNoncode|NR_036694||14.2313000|-0.1055754	chr4	 88812994	 88814787	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48600_PI429285431	0.9453779	A	0.9121371	A	1.02330825569944	0	lncRNA	52446-1_{1..400}	hg19_lincRNAsTranscripts_TCONS_l2_00013595 range=chr2:40982025-40994420 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013595 range=chr2:40982025-40994420 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 40982025	 40982424	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49644_PI429285431	0.9240213	A	0.9250722	A	0.99927183686749	0	lncRNA	53427-1_{1..634}	hg19_lincRNAsTranscripts_TCONS_l2_00025884 range=chr7:56216915-56246839 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025884 range=chr7:56216915-56246839 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 56216915	 56217548	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2415_PI429285431	0.91855365	A	0.908612	A	1.00691482442413	0	lncRNA	2407-1_{1..600}	"transcript_id ""ENST00000522274.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522274.1"" | genecode_v17"	chr5	161851384	161851983	-	ENSG00000254173.1	ENST00000522274.1	RP11-96G10.1	RP11-96G10.1-001	NA	NA	NA	inter
LNCA_21_P0005733	3.020238	A	3.535725	P	0.699556748687617	0	lncRNA	TCONS_00014790	NA	NA	NA	NA	XLOC_006865	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006865), lincRNA [TCONS_00014790]"	chr8:86446749-86446808	hs|8q21.2	Agilent_HUMAN_G3V2	TCONS_00014790	TCONS_00014790	chr8	 86446749	 86446808	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31113_PI429285431	3.8501017	P	4.340213	P	0.711970169116924	0	lncRNA	32907-1_{1..306}	n337403|DQ668378|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393188|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393188|-1.2444200|-0.5930626	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337403|DQ668378|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393188|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393188|-1.2444200|-0.5930626	chr2	181665954	181666259	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23577_PI429285431	2.3088813	A	1.1679142	A	2.20528803498025	0	lncRNA	25144-2_{3001..3241}	lnc-MTPAP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-MTPAP-1:1	chr10	 30594755	 30594995	-	lnc-MTPAP-1	lnc-MTPAP-1:1	ENSG00000259994.1	RP11-305E6.4	MTPAP	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chr10:30598730-30604995"	NA	inter
CUST_21265_PI429285431	3.957996	P	4.2318373	P	0.827114348050148	0	lncRNA	22890-1_{1..1059}	lnc-CDK5-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK5-2:10	chr7	150713519	150714577	-	lnc-CDK5-2	lnc-CDK5-2:10	ENSG00000181652.11	ATG9B	NOS3	NA	chr7:150703519-150711687	inter
CUST_42085_PI429285431	6.801106	P	6.8144355	P	0.990803245889558	0	lncRNA	44017-1_{1..107}	ENST00000579824 ncrna:miRNA chromosome:GRCh37:11:36031648:36031754:1 gene:ENSG00000263389 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579824 ncrna:miRNA chromosome:GRCh37:11:36031648:36031754:1 gene:ENSG00000263389 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 36031648	 36031754	+	ENSG00000263389	ENST00000579824	NA	NA	LDLRAD3	NA	chr11:36021648-36041754	inner
CUST_8523_PI429285431	5.051526	P	5.8012915	P	0.594700214010845	0	lncRNA	10084-1_{1..563}	lnc-RASA1-7:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASA1-7:4	chr5	 88238833	 88239395	+	lnc-RASA1-7	lnc-RASA1-7:4	ENSG00000248309	CTC-454M9.1	NA	NA	NA	inter
CUST_39346_PI429285431	0.9206725	A	0.9038409	A	1.01173509835811	0	lncRNA	40313-1_{1..798}	n386430|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010kwp.1||-1.0260800|-0.2734872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386430|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010kwp.1||-1.0260800|-0.2734872	chr7	 34390034	 34390831	-	NA	NA	NA	NA	NPSR1	NA	chr7:34697897-34807884	inter
CUST_21222_PI429285431	2.5369601	A	1.8867881	A	1.56935528524165	0	lncRNA	22847-1_{1..525}	lnc-GTDC1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTDC1-2:2	chr2	144440247	144440771	-	lnc-GTDC1-2	lnc-GTDC1-2:2	ENSG00000257277.1	RP11-434H14.1	ARHGAP15	NA	chr2:144430247-144450508	inner
CUST_51179_PI429285431	0.9087576	A	0.9061805	A	1.00178790600043	0	lncRNA	54800-1_{1..1392}	hg19_lincRNAsTranscripts_TCONS_l2_00007890 range=chr14:95982423-95984597 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007890 range=chr14:95982423-95984597 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 95982423	 95983814	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47646_PI429285431	6.633549	P	5.6535025	P	1.97252898522221	0	lncRNA	51632-1_{1..3000}	"gi|403310712|ref|NR_073150.1| Homo sapiens RAP2C, member of RAS oncogene family (RAP2C), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|403310712|ref|NR_073150.1| Homo sapiens RAP2C, member of RAS oncogene family (RAP2C), transcript variant 4, non-coding RNA"	ChrX	131337052	131340051	-	57826	NR_073150.1	NA	NA	NA	NA	NA	inter
CUST_41147_PI429285431	1.133579	A	0.9180821	A	1.16110375849095	0	lncRNA	41946-1_{1..63}	ENST00000581599 proj_ncrna:miRNA chromosome:GRCh37:HG271_PATCH:79374516:79374578:-1 gene:ENSG00000265426 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581599 proj_ncrna:miRNA chromosome:GRCh37:HG271_PATCH:79374516:79374578:-1 gene:ENSG00000265426 gene_biotype:miRNA transcript_biotype:miRNA	chrHG271_PATCH	 79374516	 79374578	-	ENSG00000265426	ENST00000581599	NA	NA	NA	NA	NA	Unknown
CUST_38702_PI429285431	4.846884	P	4.669178	P	1.13108394111067	0	lncRNA	39697-1_{1..2427}	n384111|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zxb.3||2.6868900|-0.1518177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384111|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zxb.3||2.6868900|-0.1518177	chr22	 23732792	 23735218	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.13;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00"	NA	inter
CUST_49045_PI429285431	0.9186797	A	0.91916645	A	0.999662667519262	0	lncRNA	52873-1_{1..1860}	hg19_lincRNAsTranscripts_TCONS_l2_00021348 range=chr4:150351095-150736985 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021348 range=chr4:150351095-150736985 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	150351095	150352954	-	NA	NA	NA	NA	LOC285423	NA	chr4:150351084-150736980	inter
CUST_24802_PI429285431	2.6652799	A	3.1172388	P	0.731049550298178	0	lncRNA	26345-1_{1..795}	lnc-OPA1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OPA1-1:2	chr3	193272061	193272855	+	lnc-OPA1-1	lnc-OPA1-1:2	ENSG00000225473.1	ATP13A4-AS1	ATP13A4	"hg19_refFlat_ATP13A4:range=chr3:193120441-1932725885'pad=0,hg19_refFlat_ATP13A4:range=chr3:193120441-1932725885'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90chr3:193262061-193272696"	NA	inner
CUST_46242_PI429285431	0.897548	A	0.8958076	A	1.00120708128994	0	lncRNA	50481-1_{1..874}	"gi|390407644|ref|NR_047024.1| Homo sapiens long intergenic non-protein coding RNA 439 (LINC00439), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|390407644|ref|NR_047024.1| Homo sapiens long intergenic non-protein coding RNA 439 (LINC00439), non-coding RNA"	NA	NA	NA	NA	NA	NR_047024.1	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00"	NA	Unknown
CUST_23438_PI429285431	2.3540297	A	3.3361874	P	0.506222065865917	0	lncRNA	25006-1_{1..566}	lnc-CALCOCO2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALCOCO2-5:1	chr17	 46711913	 46712478	+	lnc-CALCOCO2-5	lnc-CALCOCO2-5:1	ENSG00000242207.1	HOXB-AS4	HOXB9	NA	chr17:46701913-46703835	inter
CUST_13798_PI429285431	4.2720346	P	4.3083153	P	0.975165708573898	0	lncRNA	15441-1_{1..666}	lnc-TUBGCP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TUBGCP3-1:1	chr13	113343977	113344642	-	lnc-TUBGCP3-1	lnc-TUBGCP3-1:1	XLOC_010734	linc-TUBGCP3-2	ATP11A	NA	chr13:113344643-113354135	inter
CUST_31285_PI429285431	4.90331	P	3.2308738	A	3.18752398989053	0	lncRNA	33073-1_{1..1899}	n337746|BC042520|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|128|NULL|-1.2814600|-0.3362820	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337746|BC042520|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|128|NULL|-1.2814600|-0.3362820	chr15	 45771810	 45773708	-	NA	NA	NA	NA	SLC30A4	NA	chr15:45774676-45783663	inter
CUST_41779_PI429285431	3.262466	P	3.3211892	A	0.960113453750035	0	lncRNA	43352-1_{1..97}	ENST00000584713 ncrna:miRNA chromosome:GRCh37:3:123851776:123851872:1 gene:ENSG00000266383 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584713 ncrna:miRNA chromosome:GRCh37:3:123851776:123851872:1 gene:ENSG00000266383 gene_biotype:miRNA transcript_biotype:miRNA	chr3	123851776	123851872	+	ENSG00000266383	ENST00000584713	NA	NA	KALRN	NA	chr3:123841776-123861872	inter
CUST_43304_PI429285431	0.9201808	A	0.9196845	A	1.00034406812357	0	lncRNA	48121-1_{1..347}	ENST00000603360 havana:sense_overlapping chromosome:GRCh37:X:73177894:73189320:-1 gene:ENSG00000271199 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000603360 havana:sense_overlapping chromosome:GRCh37:X:73177894:73189320:-1 gene:ENSG00000271199 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	chrX	 73177894	 73178240	-	ENSG00000271199	ENST00000603360	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.11;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10"	NA	inter
CUST_19768_PI429285431	4.939475	P	4.7176747	P	1.16618793314197	0	lncRNA	21426-1_{1..442}	lnc-AC040934.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC040934.1-3:1	chr17	 45726762	 45727203	-	lnc-AC040934.1-3	lnc-AC040934.1-3:1	ENSG00000263766.1	RP11-580I16.2	KPNB1	"hg19_refFlat_NPEPPS:range=chr17:45608667-456992865'pad=0,hg19_refFlat_NPEPPS:range=chr17:45608667-456992865'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10chr17:45727275-45736786"	NA	inter
CUST_30839_PI429285431	5.6204333	P	6.1441765	P	0.695564785504614	0	lncRNA	32627-1_{1..273}	n336802|AB231719|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000329959|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000329959|0.2290480|-0.4068095	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336802|AB231719|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000329959|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000329959|0.2290480|-0.4068095	chr11	 93806505	 93806777	+	NA	NA	NA	NA	HEPHL1	NA	chr11:93796505-93818513	inner
CUST_29390_PI429285431	0.90504766	A	0.9055423	A	0.999657200447805	0	lncRNA	31142-1_{1..301}	n332693|AF003743|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061722|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061722|0.7360990|-0.0611572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332693|AF003743|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061722|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061722|0.7360990|-0.0611572	chr11	  2466552	  2466852	+	NA	NA	NA	NA	KCNQ1	NA	chr11:2466221-2559206	inter
CUST_15259_PI429285431	2.7919374	A	3.1926928	P	0.757461569965651	0	lncRNA	16931-1_{1..369}	lnc-TNRC6C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNRC6C-1:1	chr17	 75931213	 75931581	+	lnc-TNRC6C-1	lnc-TNRC6C-1:1	XLOC_012319	linc-TNRC6C-1	NA	NA	NA	inter
CUST_13626_PI429285431	7.549036	P	6.7050486	P	1.79500442431764	0	lncRNA	15266-1_{1..277}	lnc-RPS14-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPS14-1:3	chr5	149864792	149865068	-	lnc-RPS14-1	lnc-RPS14-1:3	XLOC_005052	linc-RPS14	NA	NA	NA	inter
CUST_24657_PI429285431	7.4041996	P	7.2953844	P	1.078342294102	0	lncRNA	26206-1_{1..2546}	lnc-BTC-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-BTC-2:1	chr4	 75895497	 75898042	-	lnc-BTC-2	lnc-BTC-2:1	ENSG00000249717.1	RP11-44F21.3	PARM1	NA	chr4:75885497-75905572	inner
CUST_24057_PI429285431	5.3569922	P	4.937379	P	1.33756889200912	0	lncRNA	25608-2_{3001..6000}	lnc-SEC16B.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC16B.1-2:2	chr1	177994575	177997574	-	lnc-SEC16B.1-2	lnc-SEC16B.1-2:2	ENSG00000254154.3	SEC16B	NA	NA	NA	inter
CUST_6076_PI429285431	6.648177	P	6.9793167	P	0.794908274138565	0	lncRNA	6000-1_{1..605}	"transcript_id ""ENST00000579012.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579012.1"" | genecode_v17"	chr18	  6928348	  6928952	-	ENSG00000265933.1	ENST00000579012.1	LINC00668	LINC00668-007	LAMA1	NA	chr18:6926973-6939965	inter
CUST_49283_PI429285431	0.9265483	A	0.91817904	A	1.00581798810595	0	lncRNA	53102-1_{1..2186}	hg19_lincRNAsTranscripts_TCONS_l2_00022742 range=chr5:1171450-1174680 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022742 range=chr5:1171450-1174680 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	  1171450	  1173635	-	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70"	NA	inter
CUST_6507_PI429285431	2.2904437	A	2.6672683	A	0.770130799518826	0	lncRNA	6449-1_{1..557}	"transcript_id ""ENST00000587248.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587248.1"" | genecode_v17"	chr19	 38308566	 38309122	+	ENSG00000267640.1	ENST00000587248.1	CTD-2554C21.2	CTD-2554C21.2-005	NA	NA	NA	inter
CUST_46937_PI429285431	10.354562	P	9.712629	P	1.56041849148624	0	lncRNA	51046-1_{1..2112}	"gi|306482647|ref|NR_036608.1| Homo sapiens serine/arginine-rich splicing factor 2 (SRSF2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|306482647|ref|NR_036608.1| Homo sapiens serine/arginine-rich splicing factor 2 (SRSF2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_036608.1	NA	NA	NA	NA	NA	Unknown
CUST_35846_PI429285431	2.7848675	A	2.747219	A	1.02643943228239	0	lncRNA	37246-1_{1..3000}	n344517|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_65|NULL|-1.3509700|-0.3193190	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344517|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_65|NULL|-1.3509700|-0.3193190	chr1	246934562	246937561	+	NA	NA	NA	NA	LOC100130097	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50chr1:246935180-246948062"	NA	inter
CUST_10140_PI429285431	4.4098682	P	4.825311	P	0.749789329804385	0	lncRNA	11662-1_{1..459}	lnc-FARP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FARP1-1:2	chr13	 99230212	 99230670	+	lnc-FARP1-1	lnc-FARP1-1:2	XLOC_010477	linc-UBAC2-2	STK24	NA	chr13:99220212-99229396	inter
CUST_2742_PI429285431	0.91793567	A	1.0253716	A	0.928236330649017	0	lncRNA	2726-1_{1..420}	"transcript_id ""ENST00000434541.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434541.1"" | genecode_v17"	chr7	   523744	   524163	-	ENSG00000234471.1	ENST00000434541.1	AC147651.1	AC147651.1-001	PDGFA	NA	chr7:536895-545755	inter
CUST_42645_PI429285431	3.8861237	P	4.4620786	P	0.670842083266013	0	lncRNA	45529-1_{1..130}	ENST00000516060 ncrna:snoRNA chromosome:GRCh37:X:24762558:24762687:1 gene:ENSG00000251869 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516060 ncrna:snoRNA chromosome:GRCh37:X:24762558:24762687:1 gene:ENSG00000251869 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	 24762558	 24762687	+	ENSG00000251869	ENST00000516060	NA	NA	POLA1	NA	chrX:24752558-24772687	inner
CUST_20307_PI429285431	3.3543234	A	3.7458403	P	0.762327645014489	0	lncRNA	21950-1_{1..296}	lnc-PPIAL4C-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PPIAL4C-4:5	chr1	149245050	149245345	+	lnc-PPIAL4C-4	lnc-PPIAL4C-4:5	ENSG00000223779.4	RP11-403I13.4	NA	NA	NA	inter
CUST_27772_PI429285431	0.9239183	A	1.8124567	A	0.54016108044821	0	lncRNA	29357-1_{1..731}	n324992|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079227|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079227|-1.2421100|-0.2475582	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324992|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079227|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079227|-1.2421100|-0.2475582	chr20	 38066539	 38067269	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49909_PI429285431	0.94282764	A	0.92891026	A	1.00969347299683	0	lncRNA	53658-1_{1..1554}	hg19_lincRNAsTranscripts_TCONS_l2_00027442 range=chr7:97525011-97608669 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027442 range=chr7:97525011-97608669 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 97525011	 97526564	-	NA	NA	NA	NA	OCM2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10chr7:97614012-97618669"	NA	inter
CUST_35523_PI429285431	0.9294062	A	0.918621	A	1.00750374401103	0	lncRNA	36929-1_{1..2446}	n342628|BC042049|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5130|NULL|1.3222500|-0.1902267	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n342628|BC042049|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5130|NULL|1.3222500|-0.1902267	chr4	188225236	188227681	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12453_PI429285431	0.9201032	A	1.145586	A	0.855308747463521	0	lncRNA	14065-1_{1..624}	lnc-FAM75A6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM75A6-1:1	chr9	 44144869	 44145492	-	lnc-FAM75A6-1	lnc-FAM75A6-1:1	XLOC_007696	linc-FAM75A6-3	NA	NA	NA	inter
CUST_30288_PI429285431	2.0244215	A	1.8278122	A	1.14600179197217	0	lncRNA	32064-1_{1..656}	n335184|AY429540|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254628|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254628|1.1309200|-0.2876478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335184|AY429540|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254628|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254628|1.1309200|-0.2876478	chr7	 18535448	 18536103	+	NA	NA	NA	NA	HDAC9	NA	chr7:18525448-18640114	inner
CUST_39946_PI429285431	4.2017303	P	4.8904037	P	0.62042408572512	0	lncRNA	40820-1_{1..2147}	n406922|NR_024416|lncRNA|Homosapiens||RefGeneNoncode|NR_024416||-0.9605970|-0.1509752	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406922|NR_024416|lncRNA|Homosapiens||RefGeneNoncode|NR_024416||-0.9605970|-0.1509752	chr7	 44079066	 44081212	+	NA	NA	NA	NA	DBNL	"hg19_refFlat_RASA4:range=chr7:102223218-1022571365'pad=0,hg19_refFlat_RASA4:range=chr7:102223218-1022571365'pad=0 3'pad=0 strand=- repeatMasking=none,-103.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.60;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10chr7:44084239-44092082"	NA	inter
CUST_48725_PI429285431	3.0293179	A	4.1907506	P	0.447068343904365	0	lncRNA	52566-1_{1..2307}	hg19_lincRNAsTranscripts_TCONS_l2_00014892 range=chr2:130783589-130793127 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014892 range=chr2:130783589-130793127 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	130783589	130785895	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8518_PI429285431	5.3128653	P	5.24065	P	1.05132979214958	0	lncRNA	10080-1_{1..3000}	lnc-C17orf58-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C17orf58-4:1	chr17	 65880525	 65883524	-	lnc-C17orf58-4	lnc-C17orf58-4:1	ENSG00000247912	AC107377.1	BPTF	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr17:65870525-65891544"	NA	inner
CUST_27261_PI429285431	0.94469947	A	0.9685268	A	0.98361979222816	0	lncRNA	28814-1_{1..283}	n324407|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041921|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041921|-1.2719700|-0.6029725	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324407|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041921|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041921|-1.2719700|-0.6029725	chr6	116061398	116061680	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8838_PI429285431	1.0801277	A	0.92298275	A	1.11507824688883	0	lncRNA	10377-1_{1..2603}	lnc-NICN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-NICN1-1:1	chr3	 49591474	 49594076	-	lnc-NICN1-1	lnc-NICN1-1:1	ENSG00000226913	XLOC_003118	BSN	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.80;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70chr3:49591922-49601799"	NA	inter
CUST_47816_PI429285431	5.1329684	P	5.3627014	P	0.852792703763494	0	lncRNA	51731-1_{1..3000}	"gi|341915973|ref|XR_132906.1| PREDICTED: Homo sapiens von Willebrand factor-like (LOC100289038), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915973|ref|XR_132906.1| PREDICTED: Homo sapiens von Willebrand factor-like (LOC100289038), misc_RNA"	NT_167232.1	     9317	    12316	+	100289038	XR_132906.2	NA	NA	NA	NA	NA	Unknown
CUST_44632_PI429285431	0.9032222	A	0.9011715	A	1.00142244764347	0	lncRNA	49198-1_{1..1550}	"gi|397139113|ref|XR_158998.1| PREDICTED: Homo sapiens uncharacterized LOC100996385 (LOC100996385), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139113|ref|XR_158998.1| PREDICTED: Homo sapiens uncharacterized LOC100996385 (LOC100996385), misc_RNA"	NA	NA	NA	NA	NA	XR_158998.1	NA	NA	NA	NA	NA	Unknown
CUST_9225_PI429285431	2.7356312	A	3.3519564	P	0.652330414517499	0	lncRNA	10736-1_{1..1208}	lnc-ERH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ERH-1:1	chr14	 69925417	 69926624	-	lnc-ERH-1	lnc-ERH-1:1	ENSG00000249775	ENST00000513855	SLC39A9	NA	chr14:69915417-69929107	inner
CUST_28082_PI429285431	9.385649	P	9.423853	P	0.973866552104394	0	lncRNA	29702-1_{1..692}	n325352|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325403|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325403|-0.9908790|-0.4096690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325352|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325403|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325403|-0.9908790|-0.4096690	chr2	 32919584	 32920275	+	NA	NA	NA	NA	TTC27	NA	chr2:32909584-32990694	inner
CUST_34960_PI429285431	3.5648518	P	3.1561513	P	1.32748954615719	0	lncRNA	36377-1_{1..1602}	n341880|BC039526|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4360|NULL|-0.8394280|-0.2546647	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341880|BC039526|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4360|NULL|-0.8394280|-0.2546647	chr12	 30908007	 30909608	+	NA	NA	NA	NA	CAPRIN2	NA	chr12:30898007-30907448	inter
CUST_46662_PI429285431	13.667464	P	13.812032	P	0.904650225093088	0	lncRNA	50832-1_{1..782}	"gi|373938438|ref|NR_046109.1| Homo sapiens family with sequence similarity 96, member B (FAM96B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373938438|ref|NR_046109.1| Homo sapiens family with sequence similarity 96, member B (FAM96B), transcript variant 3, non-coding RNA"	Chr16	 66965958	 66966739	-	51647	NR_046109.1	NA	NA	NA	NA	NA	inter
CUST_37260_PI429285431	0.91906214	A	0.91180485	A	1.00504304365566	0	lncRNA	38367-1_{1..429}	n345697|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1246|NULL|-1.3149400|-0.2054516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345697|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1246|NULL|-1.3149400|-0.2054516	chr3	138544652	138545080	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19754_PI429285431	3.667335	P	3.875192	P	0.865822381621544	0	lncRNA	21412-1_{1..2333}	lnc-AL353997.5.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL353997.5.1-1:1	chr17	 18328108	 18330440	+	lnc-AL353997.5.1-1	lnc-AL353997.5.1-1:1	ENSG00000205266.5	AL353997.3	LGALS9C	NA	chr17:18330120-18338409	inter
CUST_12694_PI429285431	2.9347677	A	2.767484	A	1.12294222229673	0	lncRNA	14312-1_{1..241}	lnc-CD1D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD1D-1:1	chr1	158132552	158132792	+	lnc-CD1D-1	lnc-CD1D-1:1	XLOC_000429	linc-CD1D-1	NA	NA	NA	inter
CUST_36765_PI429285431	0.93760926	A	0.9229528	A	1.01021086261189	0	lncRNA	37938-1_{1..1957}	n345245|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_794|NULL|-1.3891700|-0.2929672	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345245|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_794|NULL|-1.3891700|-0.2929672	chr14	 66734292	 66736248	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10787_PI429285431	0.92157567	A	0.9202078	A	1.00094858485617	0	lncRNA	12323-1_{1..942}	lnc-CEP68-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEP68-1:3	chr2	 65277619	 65278560	+	lnc-CEP68-1	lnc-CEP68-1:3	XLOC_001500	linc-CEP68	CEP68	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10chr2:65283495-65288178"	NA	inter
CUST_11236_PI429285431	0.91554016	A	0.98930657	A	0.950154212027366	0	lncRNA	12793-2_{3001..5163}	lnc-RBL2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RBL2-1:3	chr16	 53421086	 53423248	+	lnc-RBL2-1	lnc-RBL2-1:3	XLOC_011728	linc-RBL2	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10"	NA	inter
CUST_50668_PI429285431	2.9561532	P	1.6889594	A	2.40692935773395	0	lncRNA	54343-1_{1..2758}	hg19_lincRNAsTranscripts_TCONS_l2_00003507 range=chr10:43015297-43048261 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003507 range=chr10:43015297-43048261 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 43015297	 43018054	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44923_PI429285431	1.5537946	A	1.7432115	A	0.876960094272263	0	lncRNA	49439-1_{1..3000}	"gi|330688438|ref|NR_038121.1| Homo sapiens engulfment and cell motility 1 (ELMO1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|330688438|ref|NR_038121.1| Homo sapiens engulfment and cell motility 1 (ELMO1), transcript variant 2, non-coding RNA"	Chr7	 36892511	 36895510	-	9844	NR_038121.1	NA	NA	NA	NA	NA	inter
CUST_190_PI429285431	0.92268294	A	0.91495466	A	1.00537120898985	0	lncRNA	180-1_{1..428}	"transcript_id ""ENST00000492975.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000492975.1"" | genecode_v17"	chr1	 27783709	 27784136	+	ENSG00000241169.1	ENST00000492975.1	RP4-752I6.1	RP4-752I6.1-001	WASF2	NA	chr1:27773709-27796093	inner
CUST_34799_PI429285431	1.3445797	A	0.92539394	A	1.33717265736248	0	lncRNA	36235-1_{1..759}	n341706|BC043514|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4178|NULL|-0.6035260|-0.1331937	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341706|BC043514|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4178|NULL|-0.6035260|-0.1331937	chr9	 80071211	 80071969	+	NA	NA	NA	NA	GNA14	NA	chr9:80061211-80151678	inner
CUST_9503_PI429285431	0.93064827	A	0.9661589	A	0.975686363520686	0	lncRNA	11013-1_{1..1144}	lnc-SNTG2-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNTG2-3:3	chr2	   697147	   698290	+	lnc-SNTG2-3	lnc-SNTG2-3:3	XLOC_001310	linc-TMEM18-BP	NA	NA	NA	inter
CUST_32678_PI429285431	1.1001943	A	1.0279	A	1.05138736310204	0	lncRNA	34329-1_{1..3000}	n339310|BX648254|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1742|NULL|-0.0149092|-0.3014636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339310|BX648254|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1742|NULL|-0.0149092|-0.3014636	chr16	 83847971	 83850970	+	NA	NA	NA	NA	HSBP1	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr16:83841593-83846594"	NA	inter
CUST_25942_PI429285431	0.9222134	A	1.3363228	A	0.75048263727471	0	lncRNA	27461-1_{1..441}	lnc-ATXN7-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATXN7-2:2	chr3	 64001561	 64002001	+	lnc-ATXN7-2	lnc-ATXN7-2:2	ENSG00000243410.1	RP11-245J9.4	PSMD6	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30chr3:63996231-64009120"	NA	inner
CUST_48245_PI429285431	3.2876277	P	3.3655393	P	0.947428121731143	0	lncRNA	52107-1_{1..288}	hg19_lincRNAsTranscripts_TCONS_l2_00000959 range=chr1:165864-168167 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000959 range=chr1:165864-168167 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	   165864	   166151	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48545_PI429285431	5.9130325	P	5.498021	P	1.33330930511407	0	lncRNA	52394-1_{1..417}	hg19_lincRNAsTranscripts_TCONS_l2_00014794 range=chr2:111982649-112125160 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014794 range=chr2:111982649-112125160 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	111982649	111983065	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009776	5.333429	P	5.7843647	P	0.73156821515543	0	lncRNA	TCONS_00027424	NA	NA	NA	NA	XLOC_013413	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013413), lincRNA [TCONS_00027424]"	chr19:56037680-56037621	hs|19q13.42	Agilent_HUMAN_G3V2	TCONS_00027424	TCONS_00027424	chr19	 56037621	 56037680	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24687_PI429285431	0.9046984	A	0.9040198	A	1.00047048031789	0	lncRNA	26234-1_{1..630}	lnc-RFWD2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RFWD2-2:1	chr1	175525727	175526356	-	lnc-RFWD2-2	lnc-RFWD2-2:1	ENSG00000235628.1	TNR-IT1	TNR	NA	chr1:175515727-175535954	inner
CUST_21153_PI429285431	5.573302	P	5.859453	P	0.820087072107302	0	lncRNA	22776-1_{1..235}	lnc-SLC25A47-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC25A47-4:1	chr14	100873297	100873531	+	lnc-SLC25A47-4	lnc-SLC25A47-4:1	ENSG00000258620.1	RP11-362L22.1	WDR25	NA	chr14:100863297-100883366	inner
CUST_23065_PI429285431	4.632442	P	4.4120955	P	1.16501336053379	0	lncRNA	24636-1_{1..530}	lnc-CEP170-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CEP170-1:4	chr1	243260492	243261021	-	lnc-CEP170-1	lnc-CEP170-1:4	ENSG00000214837.3	RP11-261C10.3	NA	NA	NA	inter
CUST_26572_PI429285431	1.208107	A	1.5582144	A	0.784525692486517	0	lncRNA	28076-1_{1..359}	lnc-RP11-863N1.2.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-863N1.2.1-3:1	chr18	 19756434	 19756792	-	lnc-RP11-863N1.2.1-3	lnc-RP11-863N1.2.1-3:1	ENSG00000264012.1	RP11-627G18.2	GATA6	NA	chr18:19749416-19766623	inner
CUST_28405_PI429285431	1.1548921	A	1.3941638	A	0.847172873473358	0	lncRNA	30063-1_{1..285}	n325726|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045100|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045100|-1.3772600|-0.6025971	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325726|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045100|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045100|-1.3772600|-0.6025971	chr13	 51956296	 51956580	-	NA	NA	NA	NA	INTS6	NA	chr13:51946296-51966816	inner
CUST_2967_PI429285431	7.3948555	P	7.917464	P	0.696112072216045	0	lncRNA	2946-1_{1..446}	"transcript_id ""ENST00000517950.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517950.1"" | genecode_v17"	chr8	  1196789	  1197234	-	ENSG00000254160.1	ENST00000517950.1	CTD-2281E23.3	CTD-2281E23.3-001	NA	NA	NA	inter
CUST_36528_PI429285431	5.0325847	P	5.2929344	P	0.834885524017779	0	lncRNA	37729-1_{1..3000}	n345031|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_580|NULL|-1.3040100|-0.2256947	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n345031|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_580|NULL|-1.3040100|-0.2256947	chr8	142250098	142253097	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18864_PI429285431	1.037496	A	0.92142695	A	1.08377783717544	0	lncRNA	20557-1_{1..182}	lnc-C6orf123-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C6orf123-1:5	chr6	168226083	168226264	-	lnc-C6orf123-1	lnc-C6orf123-1:5	ENSG00000198221	C6orf124	MLLT4	NA	chr6:168227671-168236140	inter
CUST_40774_PI429285431	5.91589	P	5.668662	P	1.18692436146171	0	lncRNA	41493-1_{1..3000}	n410504|NR_037646|lncRNA|Homosapiens||RefGeneNoncode|NR_037646||10.7920000|-0.2856322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410504|NR_037646|lncRNA|Homosapiens||RefGeneNoncode|NR_037646||10.7920000|-0.2856322	chr11	 57479994	 57482993	+	NA	NA	NA	NA	CTNND1	NA	chr11:57529234-57586652	inner
CUST_1245_PI429285431	0.92261666	A	1.1561835	A	0.850529487795176	0	lncRNA	1237-1_{1..557}	"transcript_id ""ENST00000452813.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452813.1"" | genecode_v17"	chr2	218147462	218148018	+	ENSG00000233143.1	ENST00000452813.1	AC009492.1	AC009492.1-001	NA	NA	NA	inter
CUST_42174_PI429285431	5.4284744	P	5.854249	P	0.744438926192479	0	lncRNA	44226-1_{1..98}	ENST00000390142 ncrna:miRNA chromosome:GRCh37:11:43581206:43581303:1 gene:ENSG00000211568 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390142 ncrna:miRNA chromosome:GRCh37:11:43581206:43581303:1 gene:ENSG00000211568 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 43581206	 43581303	+	ENSG00000211568	ENST00000390142	NA	NA	NA	NA	NA	inter
CUST_47160_PI429285431	7.2085214	P	7.8177567	P	0.655544080766931	0	lncRNA	51238-1_{1..1773}	"gi|358440279|ref|NR_045568.1| Homo sapiens interferon regulatory factor 3 (IRF3), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|358440279|ref|NR_045568.1| Homo sapiens interferon regulatory factor 3 (IRF3), transcript variant 9, non-coding RNA"	Chr19	 50162826	 50164598	-	3661	NR_045568.1	NA	NA	NA	"hg19_refFlat_BCL2L12:range=chr19:50169081-501770055'pad=0,hg19_refFlat_BCL2L12:range=chr19:50169081-501770055'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.90"	NA	inter
CUST_12865_PI429285431	0.9268955	A	0.9753825	A	0.966949868330446	0	lncRNA	14492-1_{1..516}	lnc-TNFAIP3-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFAIP3-3:2	chr6	138008231	138008746	+	lnc-TNFAIP3-3	lnc-TNFAIP3-3:2	XLOC_005478	linc-TNFAIP3-2	NA	NA	NA	inter
CUST_24206_PI429285431	2.966762	A	2.551159	A	1.33385606941707	0	lncRNA	25757-1_{1..555}	lnc-ARL6IP5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARL6IP5-1:1	chr3	 69097339	 69097893	+	lnc-ARL6IP5-1	lnc-ARL6IP5-1:1	ENSG00000244513.1	CTD-2013N24.2	TMF1	"hg19_refFlat_TMF1:range=chr3:69072328-691012375'pad=0,hg19_refFlat_TMF1:range=chr3:69072328-691012375'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60chr3:69087339-69101484"	NA	inner
CUST_24172_PI429285431	9.6635	P	9.87755	P	0.862113665916992	0	lncRNA	25723-1_{1..292}	lnc-KIAA1967-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1967-2:2	chr8	 22603083	 22603374	+	lnc-KIAA1967-2	lnc-KIAA1967-2:2	ENSG00000253125.1	RP11-459E5.1	PEBP4	NA	chr8:22593083-22613250	inner
CUST_14817_PI429285431	1.1311255	A	1.6950855	A	0.676442870243873	0	lncRNA	16477-1_{1..304}	lnc-CBLB-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLB-3:2	chr3	106146751	106147054	-	lnc-CBLB-3	lnc-CBLB-3:2	XLOC_003199	linc-CBLB-10	NA	NA	NA	inter
CUST_36925_PI429285431	0.92201835	A	0.92160565	A	1.00028610276101	0	lncRNA	38081-1_{1..3000}	n345395|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_944|NULL|-1.4303000|-0.4142376	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345395|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_944|NULL|-1.4303000|-0.4142376	chr21	 17994100	 17997099	+	NA	NA	NA	NA	NA	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20"	NA	inter
CUST_30217_PI429285431	2.581178	A	1.7862946	A	1.73493714934953	0	lncRNA	31992-1_{1..280}	n335067|AJ607401|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249210|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249210|-1.4558200|-0.4062263	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335067|AJ607401|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249210|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249210|-1.4558200|-0.4062263	chr3	174158777	174159056	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14204_PI429285431	1.4012865	A	1.2340351	A	1.12291708141337	0	lncRNA	15856-1_{1..2298}	lnc-BTG2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTG2-2:2	chr1	203367603	203369900	+	lnc-BTG2-2	lnc-BTG2-2:2	XLOC_000529	linc-PRELP	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20"	NA	inter
CUST_11584_PI429285431	1.4037803	A	1.0741155	A	1.25672135027135	0	lncRNA	13163-1_{1..890}	lnc-SNCA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNCA-1:1	chr4	 90623425	 90624314	-	lnc-SNCA-1	lnc-SNCA-1:1	XLOC_004017	linc-GPRIN3-3	NA	NA	NA	inter
CUST_22218_PI429285431	0.91887623	A	0.92073727	A	0.998710857030717	0	lncRNA	23818-1_{1..485}	lnc-CALM1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALM1-4:1	chr14	 91111088	 91111572	+	lnc-CALM1-4	lnc-CALM1-4:1	ENSG00000259163.1	RP11-1078H9.5	TTC7B	NA	chr14:91101088-91121479	inner
CUST_31873_PI429285431	1.8092119	A	2.161393	A	0.783398841539416	0	lncRNA	33605-1_{1..1987}	n338425|AK023363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|822|NULL|-0.2125910|-0.3559191	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338425|AK023363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|822|NULL|-0.2125910|-0.3559191	chr1	185261515	185263501	-	NA	NA	NA	NA	SWT1	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50chr1:185251515-185260913"	NA	inter
CUST_21724_PI429285431	3.8968334	P	4.182971	P	0.820094689252637	0	lncRNA	23334-1_{1..1029}	lnc-PGBD5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PGBD5-1:1	chr1	230417236	230418264	-	lnc-PGBD5-1	lnc-PGBD5-1:1	ENSG00000224407.1	RP5-956O18.3	GALNT2	NA	chr1:230407236-230417875	inner
CUST_46633_PI429285431	4.5243397	P	4.608956	P	0.943035312780699	0	lncRNA	50808-1_{1..711}	"gi|410170730|ref|XR_171068.1| PREDICTED: Homo sapiens uncharacterized LOC101060129 (LOC101060129), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170730|ref|XR_171068.1| PREDICTED: Homo sapiens uncharacterized LOC101060129 (LOC101060129), misc_RNA"	NA	NA	NA	NA	NA	XR_171068.1	NA	NA	NA	NA	NA	Unknown
CUST_22043_PI429285431	6.519651	P	6.189982	P	1.25672500886669	0	lncRNA	23651-1_{1..551}	lnc-PRSS27-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRSS27-2:5	chr16	  2723284	  2723834	-	lnc-PRSS27-2	lnc-PRSS27-2:5	ENSG00000261169.1	RP11-20I23.12	KCTD5	NA	chr16:2732495-2733398	inter
CUST_18840_PI429285431	3.6603942	P	3.6826932	P	0.984662349483525	0	lncRNA	20534-1_{1..597}	lnc-ADAM21-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ADAM21-1:1	chr14	 70924066	 70924662	+	lnc-ADAM21-1	lnc-ADAM21-1:1	ENSG00000258801	RP11-486O13.3	ADAM21	NA	chr14:70918874-70926622	inner
CUST_1187_PI429285431	1.5646808	A	1.6797621	A	0.923330276956115	0	lncRNA	1177-1_{1..1079}	"transcript_id ""ENST00000456653.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456653.2"" | genecode_v17"	chr2	186897618	186898696	-	ENSG00000237877.2	ENST00000456653.2	AC097500.2	AC097500.2-002	NA	NA	NA	inter
CUST_5682_PI429285431	0.9275734	A	0.9292366	A	0.998847821876792	0	lncRNA	5606-1_{1..269}	"transcript_id ""ENST00000566485.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566485.1"" | genecode_v17"	chr16	 86669934	 86670202	-	ENSG00000260387.1	ENST00000566485.1	RP11-463O9.6	RP11-463O9.6-001	NA	NA	NA	inter
CUST_31034_PI429285431	0.9940621	A	0.93525153	A	1.04160665408542	0	lncRNA	32823-1_{1..636}	n337247|BC127614|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389248|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389248|2.8528600|-0.1872908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337247|BC127614|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389248|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389248|2.8528600|-0.1872908	chr22	 50660187	 50660822	-	NA	NA	NA	NA	SELO	NA	chr22:50650187-50656045	inner
LNCA_21_P0009783	0.9918094	A	0.92962354	A	1.04404642152033	0	lncRNA	TCONS_00027503	NA	NA	NA	NA	XLOC_012999	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012999), lincRNA [TCONS_00027503]"	chr19:20359564-20359623	hs|19p12	Agilent_HUMAN_G3V2	TCONS_00027503	TCONS_00027503	chr19	 20359564	 20359623	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33615_PI429285431	4.576326	P	3.8618064	P	1.64093671455689	0	lncRNA	35180-1_{1..2551}	n340374|AK124354|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2835|NULL|-1.3220900|-0.3834109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340374|AK124354|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2835|NULL|-1.3220900|-0.3834109	chr5	 10264708	 10267258	-	NA	NA	NA	NA	CCT5	"hg19_refFlat_CCT5:range=chr5:10250453-102648955'pad=0,hg19_refFlat_CCT5:range=chr5:10250453-102648955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90chr5:10254708-10266501"	NA	inner
CUST_10670_PI429285431	5.7749515	P	4.812971	P	1.94798220726023	0	lncRNA	12203-1_{1..1089}	lnc-UQCRFS1-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UQCRFS1-9:2	chr19	 28284440	 28285528	-	lnc-UQCRFS1-9	lnc-UQCRFS1-9:2	XLOC_013282	linc-ZNF681-4	NA	NA	NA	inter
CUST_4924_PI429285431	1.7331191	A	1.5971876	A	1.09880204457785	0	lncRNA	4867-1_{1..511}	"transcript_id ""ENST00000554753.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554753.1"" | genecode_v17"	chr14	 85853619	 85854129	+	ENSG00000258814.1	ENST00000554753.1	CTD-2128A3.3	CTD-2128A3.3-001	NA	NA	NA	inter
CUST_12559_PI429285431	0.9182285	A	0.9115212	A	1.00465997013152	0	lncRNA	14169-1_{1..410}	lnc-GALC-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GALC-6:1	chr14	 87515860	 87516269	-	lnc-GALC-6	lnc-GALC-6:1	XLOC_011094	linc-SEL1L-9	NA	NA	NA	inter
CUST_20298_PI429285431	2.8974953	A	2.956052	A	0.960224265883197	0	lncRNA	21942-1_{1..668}	lnc-DNAJB5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DNAJB5-1:1	chr9	 34982439	 34983106	+	lnc-DNAJB5-1	lnc-DNAJB5-1:1	ENSG00000240825.1	RP11-392A14.7	DNAJB5	NA	chr9:34989638-34992541	inner
CUST_38036_PI429285431	0.9640605	A	0.92220485	A	1.02943707713521	0	lncRNA	39119-1_{1..3000}	n377609|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029986||-0.0374674|-0.2953607	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377609|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029986||-0.0374674|-0.2953607	chr6	  2318134	  2321133	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31690_PI429285431	0.9155441	A	1.1282365	A	0.862925311024205	0	lncRNA	33436-1_{1..1135}	n338217|CR607514|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|609|NULL|-1.0815300|-0.2754182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338217|CR607514|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|609|NULL|-1.0815300|-0.2754182	chr14	 23492291	 23493425	-	NA	NA	NA	NA	PSMB5	NA	chr14:23495060-23503426	inter
CUST_51168_PI429285431	0.90613765	A	0.9049991	A	1.00078949420905	0	lncRNA	54789-2_{3001..3091}	hg19_lincRNAsTranscripts_TCONS_l2_00007753 range=chr14:60426466-60430455 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007753 range=chr14:60426466-60430455 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 60429466	 60429556	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50"	NA	inter
CUST_5249_PI429285431	5.9410768	P	6.175791	P	0.849853339654793	0	lncRNA	5189-1_{1..719}	"transcript_id ""ENST00000561123.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561123.1"" | genecode_v17"	chr15	 77861312	 77862030	+	ENSG00000259420.1	ENST00000561123.1	RP11-307C19.2	RP11-307C19.2-001	LINGO1	NA	chr15:77905369-77911023	inter
LNCA_21_P0004270	0.9961829	A	1.7517569	A	0.592310678018351	0	lncRNA	TCONS_00010006	NA	NA	NA	NA	XLOC_004443	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004443), lincRNA [TCONS_00010006]"	chr5:81190769-81190828	hs|5q14.1	Agilent_HUMAN_G3V2	TCONS_00010006	TCONS_00010006	chr5	 81190769	 81190828	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41407_PI429285431	8.977867	P	9.020146	P	0.971119674427893	0	lncRNA	42526-1_{1..74}	ENST00000583549 ncrna:miRNA chromosome:GRCh37:8:8905955:8906028:1 gene:ENSG00000263407 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583549 ncrna:miRNA chromosome:GRCh37:8:8905955:8906028:1 gene:ENSG00000263407 gene_biotype:miRNA transcript_biotype:miRNA	chr8	  8905955	  8906028	+	ENSG00000263407	ENST00000583549	NA	NA	NA	NA	NA	inter
CUST_5580_PI429285431	1.1686271	A	0.940936	A	1.17095943654594	0	lncRNA	5509-1_{1..1129}	"transcript_id ""ENST00000568699.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568699.1"" | genecode_v17"	chr16	 63969682	 63970810	+	ENSG00000261653.1	ENST00000568699.1	RP11-21L1.1	RP11-21L1.1-001	NA	"hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-24.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.64;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80"	NA	inter
CUST_48369_PI429285431	0.93535924	A	0.9158952	A	1.01358286465252	0	lncRNA	52222-1_{1..1517}	hg19_lincRNAsTranscripts_TCONS_l2_00000387 range=chr1:89887590-89890763 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000387 range=chr1:89887590-89890763 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 89887590	 89889106	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26864_PI429285431	5.945749	P	6.2042503	P	0.835955875940287	0	lncRNA	28378-1_{1..886}	n323936|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054978|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054978|-0.6944050|-0.0639082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323936|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054978|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054978|-0.6944050|-0.0639082	chr9	137277362	137278247	-	NA	NA	NA	NA	RXRA	NA	chr9:137267362-137294375	inner
CUST_51009_PI429285431	0.92055285	A	0.9140915	A	1.00448871075138	0	lncRNA	54655-1_{1..460}	hg19_lincRNAsTranscripts_TCONS_l2_00007167 range=chr13:46259207-46275492 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007167 range=chr13:46259207-46275492 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 46259207	 46259666	-	NA	NA	NA	NA	SPERT	NA	chr13:46249207-46285492	inter
CUST_3992_PI429285431	1.385594	A	0.91565514	A	1.38505076977478	0	lncRNA	3953-1_{1..3000}	"transcript_id ""ENST00000511677.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511677.1"" | genecode_v17"	chr11	 67653967	 67656966	+	ENSG00000251637.2	ENST00000511677.1	RP11-119D9.1	RP11-119D9.1-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90"	NA	inter
CUST_38442_PI429285431	7.891589	P	8.582623	P	0.619409751087774	0	lncRNA	39467-1_{1..3000}	n382689|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bka.3||1.8411900|-0.1100132	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n382689|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bka.3||1.8411900|-0.1100132	chr15	 84867599	 84870598	-	NA	NA	NA	NA	NA	"hg19_refFlat_DNM1:range=chr9:130965750-1310154015'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310154015'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50"	NA	inter
CUST_10790_PI429285431	2.1574783	A	1.0603795	A	2.13924067224786	0	lncRNA	12327-1_{1..2313}	lnc-KIDINS220-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIDINS220-7:3	chr2	  8116840	  8119152	-	lnc-KIDINS220-7	lnc-KIDINS220-7:3	XLOC_001973	linc-CMPK2-7	NA	NA	NA	inter
CUST_35924_PI429285431	1.2227395	A	1.1260619	A	1.06930810220536	0	lncRNA	37291-1_{1..3000}	n344566|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_114|NULL|-1.6295500|-0.3387018	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344566|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_114|NULL|-1.6295500|-0.3387018	chr14	101361082	101364081	+	NA	NA	NA	NA	RTL1	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30chr14:101351082-101351184"	NA	inter
CUST_17771_PI429285431	0.91380775	A	0.90502715	A	1.00610480697393	0	lncRNA	19503-1_{1..3000}	lnc-KLF10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF10-1:1	chr8	103904513	103907512	-	lnc-KLF10-1	lnc-KLF10-1:1	XLOC_007173	linc-AZIN1-1	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	inter
CUST_17830_PI429285431	2.371142	A	1.6870756	A	1.60666193838439	0	lncRNA	19565-1_{1..2119}	lnc-KCNV1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNV1-2:2	chr8	112039535	112041653	-	lnc-KCNV1-2	lnc-KCNV1-2:2	XLOC_007182	linc-KCNV1-1	NA	NA	NA	inter
CUST_49707_PI429285431	3.4689145	P	3.2750316	P	1.14383812691478	0	lncRNA	53484-1_{1..242}	hg19_lincRNAsTranscripts_TCONS_l2_00026416 range=chr7:20628686-20629433 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026416 range=chr7:20628686-20629433 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 20628686	 20628927	-	NA	NA	NA	NA	NA	"hg19_refFlat_RALA:range=chr7:39726267-397458445'pad=0,hg19_refFlat_RALA:range=chr7:39726267-397458445'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_20844_PI429285431	0.91232353	A	0.9030895	A	1.00642106909954	0	lncRNA	22475-1_{1..272}	lnc-GTF2I-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-GTF2I-1:2	chr7	 74047983	 74048254	+	lnc-GTF2I-1	lnc-GTF2I-1:2	ENSG00000261726.1	RP5-1186P10.1	NA	NA	NA	inter
CUST_51285_PI429285431	5.7631993	P	6.02326	P	0.835052784650108	0	lncRNA	54891-1_{1..310}	hg19_lincRNAsTranscripts_TCONS_l2_00008534 range=chr15:31119828-31125073 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008534 range=chr15:31119828-31125073 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 31119828	 31120137	+	NA	NA	NA	NA	FAN1	NA	chr15:31117044-31135073	inter
CUST_17885_PI429285431	1.2184255	A	0.93237346	A	1.21929907508246	0	lncRNA	19619-4_{9001..10347}	lnc-OIP5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OIP5-1:1	chr15	 41597773	 41599119	-	lnc-OIP5-1	lnc-OIP5-1:1	XLOC_011448	linc-EXD1	OIP5	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.91;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70chr15:41601466-41608741"	NA	inter
CUST_43084_PI429285431	13.609623	P	13.864959	P	0.837791992323874	0	lncRNA	47285-1_{1..126}	ENST00000515939 ncrna:snRNA chromosome:GRCh37:9:33868538:33868663:1 gene:ENSG00000251748 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515939 ncrna:snRNA chromosome:GRCh37:9:33868538:33868663:1 gene:ENSG00000251748 gene_biotype:snRNA transcript_biotype:snRNA	chr9	 33868538	 33868663	+	ENSG00000251748	ENST00000515939	NA	NA	UBE2R2	NA	chr9:33858538-33878663	inner
CUST_27972_PI429285431	2.5626292	A	2.6269412	A	0.956401302542893	0	lncRNA	29576-1_{1..478}	n325221|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329516|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329516|-1.1853900|-0.2758929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325221|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329516|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329516|-1.1853900|-0.2758929	chr2	102994668	102995145	+	NA	NA	NA	NA	IL18R1	NA	chr2:102984668-103012788	inner
CUST_13975_PI429285431	1.5684638	A	0.9118005	A	1.57643239319863	0	lncRNA	15620-1_{1..659}	lnc-C4orf46-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C4orf46-1:1	chr4	159430663	159431321	-	lnc-C4orf46-1	lnc-C4orf46-1:1	XLOC_004138	linc-FAM198B-1	NA	NA	NA	inter
CUST_11363_PI429285431	0.9091768	A	0.92858666	A	0.986636209326872	0	lncRNA	12927-1_{1..311}	lnc-ARL5B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARL5B-3:1	chr10	 19219372	 19219682	+	lnc-ARL5B-3	lnc-ARL5B-3:1	XLOC_008407	linc-PLXDC2-1	NA	NA	NA	inter
LNCA_21_P0004103	0.9370798	A	0.9165852	A	1.01430715571587	0	lncRNA	ENST00000510065	NA	NA	NA	NA	XLOC_004738	NA	ENST00000510065	NA	NA	"BROAD Institute lincRNA (XLOC_004738), lincRNA [TCONS_00009607]"	chr5:12914244-12914185	hs|5p15.2	Agilent_HUMAN_G3V2	ENST00000510065	ENST00000510065	chr5	 12914185	 12914244	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40824_PI429285431	1.4121135	A	1.2885383	A	1.08943128311452	0	lncRNA	41527-1_{1..1939}	n410593|NR_037852_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037852_5||-1.0736400|-0.1912514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410593|NR_037852_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037852_5||-1.0736400|-0.1912514	chr6	  2840911	  2842849	-	NA	NA	NA	NA	SERPINB1	NA	chr6:2833733-2842081	inter
CUST_25543_PI429285431	0.9373979	A	1.6663574	A	0.603338896830187	0	lncRNA	27073-1_{1..566}	lnc-NFE2L2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-NFE2L2-5:1	chr2	177683965	177684530	-	lnc-NFE2L2-5	lnc-NFE2L2-5:1	ENSG00000230552.1	AC092162.1	NA	NA	NA	inter
CUST_40593_PI429285431	1.2828048	A	1.3575062	A	0.949538630182961	0	lncRNA	41340-1_{1..3000}	n410063|NR_036501|lncRNA|Homosapiens||RefGeneNoncode|NR_036501||-0.9968600|-0.2791908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410063|NR_036501|lncRNA|Homosapiens||RefGeneNoncode|NR_036501||-0.9968600|-0.2791908	chr7	 32797897	 32800896	+	NA	NA	NA	NA	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_DPY19L2:range=chr12:63954292-640621735'pad=0,hg19_refFlat_DPY19L2:range=chr12:63954292-640621735'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80"	NA	inter
CUST_1980_PI429285431	1.2682426	A	1.7928749	A	0.695136256875	0	lncRNA	1971-1_{1..499}	"transcript_id ""ENST00000512263.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000512263.1"" | genecode_v17"	chr4	174818424	174818922	+	ENSG00000250708.1	ENST00000512263.1	RP11-161D15.1	RP11-161D15.1-001	NA	NA	NA	inter
CUST_36726_PI429285431	1.8187962	A	1.6536149	A	1.1213069811139	0	lncRNA	37903-1_{1..2119}	n345210|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_759|NULL|-1.3840200|-0.2762328	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345210|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_759|NULL|-1.3840200|-0.2762328	chr13	 30677317	 30679435	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005381	1.4218047	A	0.91494495	A	1.42095390000767	0	lncRNA	TCONS_00013446	NA	NA	NA	NA	XLOC_006099	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006099), lincRNA [TCONS_00013446]"	chr7:52493291-52493350	hs|7p12.1	Agilent_HUMAN_G3V2	TCONS_00013446	TCONS_00013446	chr7	 52493291	 52493350	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48203_PI429285431	4.305255	P	3.935989	P	1.29169548748082	0	lncRNA	52066-1_{1..1721}	"gi|397138597|ref|XR_159538.1| PREDICTED: Homo sapiens uncharacterized LOC100996920 (LOC100996920), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138597|ref|XR_159538.1| PREDICTED: Homo sapiens uncharacterized LOC100996920 (LOC100996920), misc_RNA"	NA	NA	NA	NA	NA	XR_159538.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007838	8.418123	P	8.045463	P	1.29473783197804	0	lncRNA	TCONS_00021133	NA	NA	NA	NA	XLOC_009756	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009756), lincRNA [TCONS_00021133]"	chr12:52606787-52607298	hs|12q13.13	Agilent_HUMAN_G3V2	TCONS_00021133	TCONS_00021133	chr12	 52606787	 52607298	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28598_PI429285431	1.3466561	A	2.1838036	A	0.559749213084673	0	lncRNA	30279-1_{1..505}	n325960|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048248|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048248|-0.9716740|-0.4344406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325960|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048248|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048248|-0.9716740|-0.4344406	chr10	 64553703	 64554207	-	NA	NA	NA	NA	ADO	NA	chr10:64564516-64565303	inter
CUST_19159_PI429285431	0.9103628	A	0.89708495	A	1.00924598676621	0	lncRNA	20830-2_{3001..6000}	lnc-GPR125-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-GPR125-2:1	chr4	 21847963	 21850962	-	lnc-GPR125-2	lnc-GPR125-2:1	UM9-5	NCRNA00099	KCNIP4	NA	chr4:21834963-21864811	inner
LNCA_21_P0005605	7.4955006	P	7.505364	P	0.993186529764094	0	lncRNA	TCONS_00014317	NA	NA	NA	NA	XLOC_006476	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006476), lincRNA [TCONS_00014317]"	chr7:65564698-65564639	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_00014317	TCONS_00014317	chr7	 65564639	 65564698	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6737_PI429285431	2.896443	A	3.4774806	P	0.668482825252876	0	lncRNA	6685-1_{1..770}	"transcript_id ""ENST00000366097.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000366097.2"" | genecode_v17"	chr20	 55689971	 55690740	+	ENSG00000203266.2	ENST00000366097.2	RP11-560A15.3	RP11-560A15.3-001	NA	"hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60"	NA	inter
CUST_29986_PI429285431	7.188108	P	6.813797	P	1.29622035995062	0	lncRNA	31752-1_{1..232}	n334277|S69184|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216292|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216292|-0.1272470|-0.3426749	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334277|S69184|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216292|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216292|-0.1272470|-0.3426749	chr7	 77200470	 77200701	+	NA	NA	NA	NA	PTPN12	NA	chr7:77190470-77224888	inner
CUST_4544_PI429285431	1.5095814	A	2.1503859	A	0.641355205712305	0	lncRNA	4492-1_{1..504}	"transcript_id ""ENST00000592296.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592296.1"" | genecode_v17"	chr12	133606975	133607478	-	ENSG00000246394.3	ENST00000592296.1	RP11-386I8.6	RP11-386I8.6-002	ZNF84	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr12:133609449-133623497"	NA	inter
LNCA_21_P0006229	4.9241014	P	4.88295	P	1.02893468118841	0	lncRNA	TCONS_00016163	NA	NA	NA	NA	XLOC_007573	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007573), lincRNA [TCONS_00016163]"	chr9:130546206-130546265	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_00016163	TCONS_00016163	chr9	130546206	130546265	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50796_PI429285431	1.1757976	A	1.8936212	A	0.608013979622954	0	lncRNA	54450-1_{1..481}	hg19_lincRNAsTranscripts_TCONS_l2_00004425 range=chr11:17590705-17594671 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004425 range=chr11:17590705-17594671 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 17590705	 17591185	+	NA	NA	NA	NA	OTOG	NA	chr11:17580705-17604671	inter
CUST_46457_PI429285431	0.9161013	A	0.9041761	A	1.00830017578762	0	lncRNA	50660-1_{1..3000}	"gi|372620343|ref|NR_045998.1| Homo sapiens cyclin D-type binding-protein 1 (CCNDBP1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|372620343|ref|NR_045998.1| Homo sapiens cyclin D-type binding-protein 1 (CCNDBP1), transcript variant 5, non-coding RNA"	Chr15	 43477466	 43480465	+	23582	NR_045998.1	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90"	NA	inter
CUST_17947_PI429285431	5.2388496	P	5.499159	P	0.834908845894959	0	lncRNA	19678-1_{1..476}	lnc-ARID2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARID2-3:1	chr12	 46878241	 46878716	+	lnc-ARID2-3	lnc-ARID2-3:1	XLOC_009723	linc-FAM113B-3	NA	NA	NA	inter
CUST_43_PI429201921	3.165615	P	1.5087646	A	3.15327370112835	0	lncRNA	44-1_{1..1366}	TC01005361.hg.1	TCONS_l2_00001110-XLOC_l2_000832 // Broad TUCP // linc-EYA3 chr1:-:28446483-28447826 // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00001111-XLOC_l2_000832 // Broad TUCP // linc-EYA3 chr1:-:28446483-28447850 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:28446483-28447826	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00001110-XLOC_l2_000832	linc-EYA3	chr1	 28446483	 28447826	-	NA	NA	NA	NA	PKNOX2	NA	chr11:125118522-125146694	Unknown
LNCA_21_P0002487	3.054367	P	3.2710793	P	0.860524217902463	0	lncRNA	TCONS_00004371	NA	NA	NA	NA	XLOC_002256	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002256), lincRNA [TCONS_00004371]"	chr2:108683817-108683758	hs|2q12.3	Agilent_HUMAN_G3V2	TCONS_00004371	TCONS_00004371	chr2	108683758	108683817	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12762_PI429285431	4.5801477	P	4.96001	P	0.768510938720466	0	lncRNA	14385-1_{1..627}	lnc-FGFR1OP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGFR1OP-1:2	chr6	167317788	167318414	+	lnc-FGFR1OP-1	lnc-FGFR1OP-1:2	XLOC_005539	linc-FGFR1OP-1	NA	NA	NA	inter
CUST_43697_PI429285431	0.9226221	A	0.91085154	A	1.00819210361819	0	lncRNA	48446-2_{3001..3588}	"gi|315221145|ref|NR_037664.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 7 (PTPN7), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|315221145|ref|NR_037664.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 7 (PTPN7), transcript variant 5, non-coding RNA"	Chr1	202119141	202119728	-	5778	NR_037664.1	NA	NA	NA	NA	NA	inter
CUST_19319_PI429285431	0.900343	A	0.894664	A	1.00394414056912	0	lncRNA	20985-1_{1..819}	lnc-ZFC3H1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZFC3H1-5:1	chr12	 72451031	 72451849	-	lnc-ZFC3H1-5	lnc-ZFC3H1-5:1	ENSG00000258115.1	RP11-89M22.3	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
CUST_34638_PI429285431	7.274043	P	6.9811525	P	1.22509234433703	0	lncRNA	36092-1_{1..2147}	n341538|S76965|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4008|NULL|1.4964800|-0.3096123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341538|S76965|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4008|NULL|1.4964800|-0.3096123	chr8	 79428335	 79430481	+	NA	NA	NA	NA	PKIA	NA	chr8:79428336-79517502	inner
CUST_10969_PI429285431	0.89053345	A	0.9000124	A	0.993451229808282	0	lncRNA	12511-1_{1..436}	lnc-HS3ST1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HS3ST1-1:3	chr4	 11748610	 11749045	-	lnc-HS3ST1-1	lnc-HS3ST1-1:3	XLOC_003882	linc-HS3ST1-2	NA	NA	NA	inter
CUST_28985_PI429285431	1.2527828	A	2.2982466	A	0.484489129058165	0	lncRNA	30706-1_{1..436}	n326466|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097631|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097631|-0.9380990|-0.3118243	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326466|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097631|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097631|-0.9380990|-0.3118243	chr1	116797179	116797614	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27634_PI429285431	0.91466165	A	0.9028551	A	1.00821725466216	0	lncRNA	29212-1_{1..572}	n324838|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171685|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171685|-0.9212020|-0.5011087	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324838|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171685|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171685|-0.9212020|-0.5011087	chr21	 28018988	 28019559	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27476_PI429285431	1.3888782	A	1.3511118	A	1.02652331844728	0	lncRNA	29046-1_{1..493}	n324652|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317993|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317993|-0.9125130|-0.2711962	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324652|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317993|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317993|-0.9125130|-0.2711962	chr22	 44815552	 44816044	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34612_PI429285431	2.2833014	A	1.4529388	A	1.77813221333408	0	lncRNA	36067-1_{1..2642}	n341497|AX747167|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3967|NULL|-1.1533500|-0.3020193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341497|AX747167|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3967|NULL|-1.1533500|-0.3020193	chr8	 52860661	 52863302	+	NA	NA	NA	NA	LOC100287313	NA	chr8:52850661-52859733	inter
CUST_10683_PI429285431	0.9042035	A	0.8998701	A	1.00300819957099	0	lncRNA	12216-1_{1..2671}	lnc-EDAR-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EDAR-5:1	chr2	108846342	108849012	-	lnc-EDAR-5	lnc-EDAR-5:1	XLOC_002258	linc-ST6GAL2-9	NA	NA	NA	inter
CUST_7128_PI429285431	0.8989081	A	1.1519868	A	0.839103862169144	0	lncRNA	7065-1_{1..617}	"transcript_id ""ENST00000446370.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446370.1"" | genecode_v17"	chrX	152876149	152876765	+	ENSG00000228616.1	ENST00000446370.1	RP11-66N11.7	RP11-66N11.7-001	NA	NA	NA	inter
CUST_45524_PI429285431	5.074677	P	4.7281346	P	1.27150964007202	0	lncRNA	49932-1_{1..529}	"gi|374671830|ref|NR_046284.1| Homo sapiens uncharacterized LOC100128511 (LOC100128511), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374671830|ref|NR_046284.1| Homo sapiens uncharacterized LOC100128511 (LOC100128511), transcript variant 2, non-coding RNA"	Chr10	 21463231	 21463759	+	100128511	NR_046284.1	NA	NA	NA	NA	NA	inter
CUST_18439_PI429285431	6.081154	P	8.309002	P	0.213476918993541	0	lncRNA	20162-1_{1..722}	lnc-SART1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SART1-1:2	chr11	 65727288	 65728009	+	lnc-SART1-1	lnc-SART1-1:2	ENSG00000175513	TSGA10IP	SART1	NA	chr11:65729160-65737434	inner
CUST_43024_PI429285431	5.303794	P	5.4007998	P	0.934971438921562	0	lncRNA	46385-1_{1..101}	ENST00000516709 ncrna:snRNA chromosome:GRCh37:2:37186505:37186605:1 gene:ENSG00000252518 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516709 ncrna:snRNA chromosome:GRCh37:2:37186505:37186605:1 gene:ENSG00000252518 gene_biotype:snRNA transcript_biotype:snRNA	chr2	 37186505	 37186605	+	ENSG00000252518	ENST00000516709	NA	NA	STRN	NA	chr2:37176505-37193615	inner
CUST_42725_PI429285431	8.027533	P	8.488266	P	0.726616987564614	0	lncRNA	45665-1_{1..129}	ENST00000408175 ncrna:snoRNA chromosome:GRCh37:14:91592769:91592897:1 gene:ENSG00000221102 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408175 ncrna:snoRNA chromosome:GRCh37:14:91592769:91592897:1 gene:ENSG00000221102 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 91592769	 91592897	+	ENSG00000221102	ENST00000408175	NA	NA	C14orf159	NA	chr14:91582769-91602897	inner
CUST_51534_PI429285431	5.6751223	P	6.135533	P	0.726779332904018	0	lncRNA	55101-1_{1..1244}	hg19_lincRNAsTranscripts_TCONS_l2_00011243 range=chr17:41418678-41466578 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011243 range=chr17:41418678-41466578 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 41418678	 41419921	-	NA	NA	NA	NA	ARL4D	NA	chr17:41476353-41476578	inter
CUST_46295_PI429285431	9.299673	P	9.366246	P	0.954903598809612	0	lncRNA	50527-2_{3001..3626}	"gi|389565514|ref|NR_051979.1| Homo sapiens importin 4 (IPO4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|389565514|ref|NR_051979.1| Homo sapiens importin 4 (IPO4), transcript variant 2, non-coding RNA"	Chr14	 24652425	 24653050	-	79711	NR_051979.1	NA	NA	NA	NA	NA	inter
CUST_23013_PI429285431	2.8296125	A	3.346176	P	0.699034953070936	0	lncRNA	24585-1_{1..561}	lnc-AC005481.5.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC005481.5.1-1:3	chr7	157649982	157650542	+	lnc-AC005481.5.1-1	lnc-AC005481.5.1-1:3	ENSG00000233038.1	AC011899.9	PTPRN2	NA	chr7:157639982-157660274	inner
CUST_2256_PI429285431	0.90761507	A	0.9096408	A	0.998596856289872	0	lncRNA	2248-1_{1..576}	"transcript_id ""ENST00000507217.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507217.1"" | genecode_v17"	chr5	 91378414	 91378989	+	ENSG00000250049.1	ENST00000507217.1	RP11-348J24.2	RP11-348J24.2-001	NA	NA	NA	inter
CUST_6068_PI429285431	2.0532002	A	2.2485356	A	0.873369829928733	0	lncRNA	5992-1_{1..471}	"transcript_id ""ENST00000579113.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579113.1"" | genecode_v17"	chr18	  5310395	  5310865	+	ENSG00000264254.1	ENST00000579113.1	CTD-3096M3.1	CTD-3096M3.1-001	NA	NA	NA	inter
CUST_45803_PI429285431	11.391088	P	11.544177	P	0.899322831121907	0	lncRNA	50143-1_{1..1818}	"gi|315013586|ref|NR_026593.2| Homo sapiens thioredoxin-related transmembrane protein 2 (TMX2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315013586|ref|NR_026593.2| Homo sapiens thioredoxin-related transmembrane protein 2 (TMX2), transcript variant 3, non-coding RNA"	Chr11	 57479995	 57481812	+	51075	NR_026593.2	NA	NA	NA	NA	NA	inter
CUST_17007_PI429285431	0.9162386	A	0.9117331	A	1.0031278561876	0	lncRNA	18717-1_{1..747}	lnc-T-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-T-1:1	chr6	166472862	166473608	-	lnc-T-1	lnc-T-1:1	XLOC_005919	linc-PDE10A-3	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60"	NA	inter
CUST_42058_PI429285431	5.505677	P	5.6779222	P	0.887460491942128	0	lncRNA	43965-1_{1..71}	ENST00000577688 ncrna:miRNA chromosome:GRCh37:20:60907543:60907613:-1 gene:ENSG00000265329 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577688 ncrna:miRNA chromosome:GRCh37:20:60907543:60907613:-1 gene:ENSG00000265329 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 60907543	 60907613	-	ENSG00000265329	ENST00000577688	NA	NA	LAMA5	NA	chr20:60897543-60917613	inner
CUST_3175_PI429285431	0.9028277	A	0.9028698	A	0.999970818929474	0	lncRNA	3155-1_{1..252}	"transcript_id ""ENST00000521224.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521224.1"" | genecode_v17"	chr8	 73374546	 73374797	+	ENSG00000254347.1	ENST00000521224.1	RP11-351E7.1	RP11-351E7.1-001	NA	NA	NA	inter
CUST_13485_PI429285431	1.2898126	A	1.0458399	A	1.18424920219103	0	lncRNA	15123-1_{1..301}	lnc-FLRT2-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FLRT2-2:5	chr14	 86415371	 86415671	+	lnc-FLRT2-2	lnc-FLRT2-2:5	XLOC_010891	linc-GPR65-6	NA	NA	NA	inter
CUST_9440_PI429285431	2.7089806	A	2.3417175	A	1.2899034650627	0	lncRNA	10946-1_{1..284}	lnc-KIAA1147-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1147-3:7	chr7	141215384	141215667	-	lnc-KIAA1147-3	lnc-KIAA1147-3:7	XLOC_006625	linc-MRPS33-2	NA	NA	NA	inter
LNCA_21_P0007616	1.6354129	A	1.5684435	A	1.04751390877601	0	lncRNA	TCONS_00020543	NA	NA	NA	NA	XLOC_009858	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009858), lincRNA [TCONS_00020543]"	chr12:103562049-103562108	hs|12q23.2	Agilent_HUMAN_G3V2	TCONS_00020543	TCONS_00020543	chr12	103562049	103562108	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39344_PI429285431	0.9356606	A	1.0857872	A	0.901171379159874	0	lncRNA	40311-1_{1..740}	n386427|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010kvo.1||-0.7432460|-0.1283453	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386427|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010kvo.1||-0.7432460|-0.1283453	chr7	 29688993	 29689732	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_245_PI429285431	3.9936376	P	4.2743287	P	0.823196583635737	0	lncRNA	237-1_{1..1211}	"transcript_id ""ENST00000423408.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423408.1"" | genecode_v17"	chr1	 59348540	 59349750	-	ENSG00000232453.1	ENST00000423408.1	RP4-794H19.1	RP4-794H19.1-001	NA	NA	NA	inter
CUST_42051_PI429285431	7.0623856	P	7.3511252	P	0.818616924949207	0	lncRNA	43954-1_{1..70}	ENST00000577752 ncrna:miRNA chromosome:GRCh37:9:36893459:36893528:-1 gene:ENSG00000265368 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577752 ncrna:miRNA chromosome:GRCh37:9:36893459:36893528:-1 gene:ENSG00000265368 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 36893459	 36893528	-	ENSG00000265368	ENST00000577752	NA	NA	PAX5	NA	chr9:36883459-36903528	inner
CUST_42630_PI429285431	1.3385199	A	0.9193255	A	1.33718066543489	0	lncRNA	45499-1_{1..89}	ENST00000364166 ncrna:snoRNA chromosome:GRCh37:14:101445339:101445427:1 gene:ENSG00000201036 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364166 ncrna:snoRNA chromosome:GRCh37:14:101445339:101445427:1 gene:ENSG00000201036 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101445339	101445427	+	ENSG00000201036	ENST00000364166	NA	NA	NA	NA	NA	inter
CUST_3031_PI429285431	5.3309054	P	5.90192	P	0.673143222428951	0	lncRNA	3010-1_{1..568}	"transcript_id ""ENST00000523496.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523496.1"" | genecode_v17"	chr8	 20798939	 20799506	+	ENSG00000254260.1	ENST00000523496.1	RP11-369E15.1	RP11-369E15.1-001	NA	NA	NA	inter
LNCA_21_P0004287	0.9743717	A	0.9720472	A	1.00161251933457	0	lncRNA	TCONS_00010065	NA	NA	NA	NA	XLOC_004517	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004517), lincRNA [TCONS_00010065]"	chr5:115294596-115294655	hs|5q23.1	Agilent_HUMAN_G3V2	TCONS_00010065	TCONS_00010065	chr5	115294596	115294655	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18442_PI429285431	4.455865	P	4.414505	P	1.02908346612654	0	lncRNA	20165-1_{1..1988}	lnc-AL358813.2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL358813.2-1:1	chr1	149676746	149678733	+	lnc-AL358813.2-1	lnc-AL358813.2-1:1	ENSG00000223759	RP11-353N4.4	LOC100288037	NA	chr1:149671871-149672242	inter
CUST_30571_PI429285431	9.850582	P	10.908396	P	0.480359358495412	0	lncRNA	32353-1_{1..419}	n335780|X17469|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321614|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321614|1.7671000|-0.1280311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335780|X17469|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321614|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321614|1.7671000|-0.1280311	chr6	135518086	135518504	+	NA	NA	NA	NA	MYB	NA	chr6:135508086-135530090	inner
CUST_43406_PI429285431	8.316846	P	8.775303	P	0.72776420538085	0	lncRNA	48218-1_{1..1782}	"gi|312222722|ref|NR_037576.1| Homo sapiens transmembrane protein 222 (TMEM222), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|312222722|ref|NR_037576.1| Homo sapiens transmembrane protein 222 (TMEM222), transcript variant 2, non-coding RNA"	Chr1	 27648636	 27650417	+	84065	NR_037576.1	NA	NA	NA	NA	NA	inter
CUST_7096_PI429285431	2.0524402	A	1.2397254	A	1.75651366473717	0	lncRNA	7031-1_{1..1077}	"transcript_id ""ENST00000603672.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603672.1"" | genecode_v17"	chrX	 73183790	 73184866	-	ENSG00000230590.3	ENST00000603672.1	FTX	FTX-010	LOC100506745	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-23.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40chrX:73280376-73286133"	NA	inter
CUST_6667_PI429285431	4.5640535	P	5.147902	P	0.667181643104186	0	lncRNA	6613-1_{1..491}	"transcript_id ""ENST00000602977.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602977.1"" | genecode_v17"	chr20	 23612463	 23612953	-	ENSG00000270001.1	ENST00000602977.1	RP11-218C14.8	RP11-218C14.8-001	CST3	NA	chr20:23614294-23618574	inter
CUST_20609_PI429285431	0.9177513	A	3.1173394	A	0.217699786835542	0	lncRNA	22248-1_{1..1198}	lnc-C6orf112-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C6orf112-1:1	chr6	105728496	105729693	+	lnc-C6orf112-1	lnc-C6orf112-1:1	ENSG00000231628.1	RP3-355L5.4	PREP	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10chr6:105725442-105739630"	NA	inner
CUST_24701_PI429285431	1.941355	A	1.9492321	A	0.994554888996121	0	lncRNA	26247-1_{1..704}	lnc-C6orf228-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C6orf228-3:1	chr6	 11259055	 11259758	+	lnc-C6orf228-3	lnc-C6orf228-3:1	ENSG00000247925.2	RP3-510L9.1	NEDD9	"hg19_refFlat_NEDD9:range=chr6:11185395-113062365'pad=0,hg19_refFlat_NEDD9:range=chr6:11185395-113062365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NEDD9:range=chr6:11185395-112327485'pad=0,hg19_refFlat_NEDD9:range=chr6:11185395-112327485'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50chr6:11249055-11269332"	NA	inter
CUST_36420_PI429285431	5.072871	P	5.1049194	P	0.978030661607885	0	lncRNA	37636-1_{1..535}	n344935|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_484|NULL|-1.2859800|-0.3799316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344935|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_484|NULL|-1.2859800|-0.3799316	chr6	167509670	167510204	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11491_PI429285431	1.5464073	A	1.5791628	A	0.977551422397682	0	lncRNA	13059-1_{1..2271}	lnc-RP11-82I10.1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-82I10.1.1-4:1	chr15	 98559659	 98561929	-	lnc-RP11-82I10.1.1-4	lnc-RP11-82I10.1.1-4:1	XLOC_011603	linc-RGMA-6	NA	NA	NA	inter
CUST_24751_PI429285431	7.5138693	P	7.5789146	P	0.955915301795671	0	lncRNA	26295-1_{1..437}	lnc-FBXO47-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXO47-2:1	chr17	 37060658	 37061094	-	lnc-FBXO47-2	lnc-FBXO47-2:1	ENSG00000263466.1	RP1-56K13.2	LASP1	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.20chr17:37050658-37070853"	NA	inter
CUST_39295_PI429285431	5.8192945	P	5.436083	P	1.30424192393004	0	lncRNA	40264-1_{1..1053}	n386302|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gqq.2||-0.8680090|-0.1980639	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n386302|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gqq.2||-0.8680090|-0.1980639	chr22	 17082800	 17083852	+	NA	NA	NA	NA	CCT8L2	NA	chr22:17072800-17073700	inter
CUST_6106_PI429285431	6.026637	P	6.380885	P	0.782277296318802	0	lncRNA	6032-1_{1..417}	"transcript_id ""ENST00000583436.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583436.1"" | genecode_v17"	chr18	 19451407	 19451823	-	ENSG00000264149.1	ENST00000583436.1	RP11-268I9.3	RP11-268I9.3-001	MIB1	NA	chr18:19441407-19450914	inter
CUST_52102_PI429285431	2.0117629	A	2.4182851	A	0.754439856682171	0	lncRNA	55627-2_{3001..3694}	hg19_lincRNAsTranscripts_TCONS_l2_00017567 range=chr22:17518205-17539887 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017567 range=chr22:17518205-17539887 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17521205	 17521898	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009473	3.2238264	P	3.6701753	P	0.733897811403442	0	lncRNA	TCONS_00026325	NA	NA	NA	NA	XLOC_012662	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012662), lincRNA [TCONS_00026325]"	chr18:35462333-35462392	hs|18q12.2	Agilent_HUMAN_G3V2	TCONS_00026325	TCONS_00026325	chr18	 35462333	 35462392	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44661_PI429285431	6.505478	P	5.6840024	P	1.76721258766025	0	lncRNA	49223-1_{1..3000}	"gi|221307478|ref|NR_026590.1| Homo sapiens chromodomain protein, Y-like (CDYL), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|221307478|ref|NR_026590.1| Homo sapiens chromodomain protein, Y-like (CDYL), transcript variant 6, non-coding RNA"	Chr6	  4706393	  4709392	+	9425	NR_026590.1	NA	NA	NA	NA	NA	inter
CUST_4638_PI429285431	1.864813	A	1.0524836	A	1.75604449423749	0	lncRNA	4584-1_{1..348}	"transcript_id ""ENST00000439454.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439454.1"" | genecode_v17"	chr13	 63757234	 63757581	-	ENSG00000227564.1	ENST00000439454.1	RP11-527N12.1	RP11-527N12.1-001	NA	NA	NA	inter
CUST_44423_PI429285431	0.91845727	A	1.7175105	A	0.574726218398602	0	lncRNA	49036-1_{1..829}	"gi|397139074|ref|XR_109834.2| PREDICTED: Homo sapiens uncharacterized LOC100507487 (LOC100507487), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139074|ref|XR_109834.2| PREDICTED: Homo sapiens uncharacterized LOC100507487 (LOC100507487), misc_RNA"	Chr4	129434718	129435546	+	100507487	XR_109834.3	NA	NA	NA	NA	NA	inter
CUST_41182_PI429285431	0.9172915	A	0.9192775	A	0.998624356765212	0	lncRNA	42027-1_{1..95}	ENST00000579587 ncrna:miRNA chromosome:GRCh37:14:101505680:101505774:1 gene:ENSG00000265032 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579587 ncrna:miRNA chromosome:GRCh37:14:101505680:101505774:1 gene:ENSG00000265032 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101505680	101505774	+	ENSG00000265032	ENST00000579587	NA	NA	NA	NA	NA	inter
CUST_22706_PI429285431	1.09866	A	0.93053937	A	1.12359384766696	0	lncRNA	24290-1_{1..291}	lnc-GSG2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GSG2-1:1	chr17	  3625683	  3625973	+	lnc-GSG2-1	lnc-GSG2-1:1	ENSG00000262692.1	CTD-3195I5.3	ITGAE	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-21.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30chr17:3617919-3635782"	NA	inner
CUST_46165_PI429285431	0.9303265	A	0.9393307	A	0.993778200213202	0	lncRNA	50414-1_{1..2697}	"gi|397139474|ref|XR_158870.1| PREDICTED: Homo sapiens uncharacterized LOC100128002 (LOC100128002), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139474|ref|XR_158870.1| PREDICTED: Homo sapiens uncharacterized LOC100128002 (LOC100128002), misc_RNA"	Chr12	131780073	131782769	+	100128002	XR_158870.2	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10"	NA	inter
CUST_15157_PI429285431	2.3065119	A	1.8046167	A	1.41607256838324	0	lncRNA	16818-1_{1..1018}	lnc-IL6-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL6-3:4	chr7	 22611394	 22612411	+	lnc-IL6-3	lnc-IL6-3:4	XLOC_006009	linc-IL6-1	NA	NA	NA	inter
CUST_8978_PI429285431	6.605213	P	5.88871	P	1.64319420628516	0	lncRNA	10509-1_{1..1671}	lnc-DNTTIP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DNTTIP2-1:1	chr1	 94240753	 94242423	-	lnc-DNTTIP2-1	lnc-DNTTIP2-1:1	ENSG00000230439	RP11-488P3.1	NA	NA	NA	inner
CUST_29099_PI429285431	1.0551877	A	0.9199998	A	1.09823584129529	0	lncRNA	30832-1_{1..317}	n326595|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023100|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023100|-1.1908900|-0.2764596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326595|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023100|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023100|-1.1908900|-0.2764596	chr1	 59294258	 59294574	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41073_PI429285431	5.044846	P	5.335565	P	0.817494539956598	0	lncRNA	41747-1_{1..109}	ENST00000516425 ncrna:miRNA chromosome:GRCh37:18:14118593:14118701:-1 gene:ENSG00000252234 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516425 ncrna:miRNA chromosome:GRCh37:18:14118593:14118701:-1 gene:ENSG00000252234 gene_biotype:miRNA transcript_biotype:miRNA	chr18	 14118593	 14118701	-	ENSG00000252234	ENST00000516425	NA	NA	ZNF519	NA	chr18:14108593-14128701	inner
CUST_9558_PI429285431	8.547748	P	8.509829	P	1.02663190393408	0	lncRNA	11073-1_{1..375}	lnc-NNAT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NNAT-1:1	chr20	 36205502	 36205876	+	lnc-NNAT-1	lnc-NNAT-1:1	XLOC_013517	linc-CTNNBL1-2	NA	NA	NA	inter
CUST_27718_PI429285431	1.8740611	A	1.0174772	A	1.81074563809817	0	lncRNA	29298-1_{1..823}	n324931|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079852|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079852|-0.9170500|-0.2045886	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324931|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079852|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079852|-0.9170500|-0.2045886	chr20	 55608156	 55608978	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46171_PI429285431	3.7489073	P	4.0890613	P	0.789956983668442	0	lncRNA	50418-2_{3001..3726}	"gi|388556535|ref|NR_027248.2| Homo sapiens ankyrin repeat domain 26 pseudogene 3 (ANKRD26P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|388556535|ref|NR_027248.2| Homo sapiens ankyrin repeat domain 26 pseudogene 3 (ANKRD26P3), non-coding RNA"	Chr13	 19839940	 19840665	-	100101938	NR_027248.2	NA	NA	NA	NA	NA	inter
CUST_50196_PI429285431	1.7228262	A	0.9560701	A	1.70143979167281	0	lncRNA	53921-1_{1..341}	hg19_lincRNAsTranscripts_TCONS_l2_00028740 range=chr9:40332917-40337603 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028740 range=chr9:40332917-40337603 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 40332917	 40333257	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50817_PI429285431	1.5559314	A	1.1385931	A	1.33546142118987	0	lncRNA	54468-1_{1..769}	hg19_lincRNAsTranscripts_TCONS_l2_00004521 range=chr11:50266793-50303205 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004521 range=chr11:50266793-50303205 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 50266793	 50267561	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48739_PI429285431	1.3782425	A	0.9386727	A	1.35619985931012	0	lncRNA	52578-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00014902 range=chr2:132176511-132182503 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014902 range=chr2:132176511-132182503 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	132176511	132179510	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6091_PI429285431	6.3559694	P	6.429452	P	0.950341146747021	0	lncRNA	6017-1_{1..168}	"transcript_id ""ENST00000589843.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589843.1"" | genecode_v17"	chr18	 12432896	 12433063	+	ENSG00000267108.1	ENST00000589843.1	RP11-861E21.1	RP11-861E21.1-001	SPIRE1	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70chr18:12446511-12447634"	NA	inter
CUST_42797_PI429285431	1.0264412	A	0.97115844	A	1.03906273371161	0	lncRNA	45789-1_{1..73}	ENST00000363280 ncrna:snoRNA chromosome:GRCh37:14:101422577:101422649:1 gene:ENSG00000200150 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363280 ncrna:snoRNA chromosome:GRCh37:14:101422577:101422649:1 gene:ENSG00000200150 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101422577	101422649	+	ENSG00000200150	ENST00000363280	NA	NA	NA	NA	NA	inter
LNCA_33_P3721983	12.167773	P	12.276703	P	0.927275537033663	0	lncRNA	XR_110526	XR_110526	XR_110526	    84796	Hs.303653	MGC13053	uncharacterized MGC13053	ENST00000532619	THC2479763	NA	"PREDICTED: Homo sapiens hypothetical MGC13053 (MGC13053), miscRNA [XR_110526]"	chr11:118304175-118304116	hs|11q23.3	Agilent_HUMAN_G3V2	XR_110526	XR_110526	chr11	118304116	118304175	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49949_PI429285431	4.683195	P	4.3651495	P	1.24664051044877	0	lncRNA	53699-1_{1..615}	hg19_lincRNAsTranscripts_TCONS_l2_00026201 range=chr7:128220056-128259232 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026201 range=chr7:128220056-128259232 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	128220056	128220670	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50553_PI429285431	1.9367702	A	1.0232928	A	1.88358011857124	0	lncRNA	54245-1_{1..320}	hg19_lincRNAsTranscripts_TCONS_l2_00030926 range=chrY:9154638-9159872 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030926 range=chrY:9154638-9159872 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrY	  9154638	  9154957	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009942	6.0525904	P	5.7371264	P	1.24441181703632	0	lncRNA	TCONS_00028118	NA	NA	NA	NA	XLOC_013474	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013474), lincRNA [TCONS_00028118]"	chr20:19029912-19029971	hs|20p11.23	Agilent_HUMAN_G3V2	TCONS_00028118	TCONS_00028118	chr20	 19029912	 19029971	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40073_PI429285431	0.91697097	A	0.9061118	A	1.00755540216496	0	lncRNA	40921-3_{6001..9000}	n407337|NR_026800|lncRNA|Homosapiens||RefGeneNoncode|NR_026800||1.6663100|-0.1674070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407337|NR_026800|lncRNA|Homosapiens||RefGeneNoncode|NR_026800||1.6663100|-0.1674070	chr14	106389837	106392836	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47934_PI429285431	5.569465	P	6.1169934	P	0.684191269459903	0	lncRNA	51825-1_{1..1811}	"gi|410172308|ref|XR_171705.1| PREDICTED: Homo sapiens uncharacterized LOC100507435 (LOC100507435), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410172308|ref|XR_171705.1| PREDICTED: Homo sapiens uncharacterized LOC100507435 (LOC100507435), misc_RNA"	NA	NA	NA	NA	NA	XR_171705.1	NA	NA	NA	NA	NA	Unknown
CUST_47229_PI429285431	0.9437523	A	0.91379786	A	1.02097988287234	0	lncRNA	51304-1_{1..1251}	"gi|393186073|ref|NR_072988.1| Homo sapiens MACROD2 antisense RNA 1 (MACROD2-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|393186073|ref|NR_072988.1| Homo sapiens MACROD2 antisense RNA 1 (MACROD2-AS1), non-coding RNA"	Chr20	 14885587	 14886837	-	100379174	NR_072988.1	NA	NA	NA	NA	NA	inter
CUST_7693_PI429285431	2.9852476	A	2.7057228	A	1.21379501444443	0	lncRNA	9326-1_{1..983}	lnc-KCNIP1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KCNIP1-1:4	chr5	169760138	169761120	+	lnc-KCNIP1-1	lnc-KCNIP1-1:4	ENSG00000235172	CTB-114C7.3	NA	NA	NA	inter
CUST_45174_PI429285431	1.4207255	A	0.9195528	A	1.41536357843202	0	lncRNA	49648-2_{3001..3957}	"gi|229577146|ref|NR_027638.1| Homo sapiens ADAM metallopeptidase domain 9 (ADAM9), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|229577146|ref|NR_027638.1| Homo sapiens ADAM metallopeptidase domain 9 (ADAM9), transcript variant 3, non-coding RNA"	Chr8	 38857505	 38858461	+	8754	NR_027638.1	NA	NA	NA	NA	NA	inter
CUST_36525_PI429285431	5.640605	P	6.602424	P	0.513409180950458	0	lncRNA	37724-1_{1..2264}	n345025|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_574|NULL|-1.3165200|-0.3080929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345025|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_574|NULL|-1.3165200|-0.3080929	chr8	125472839	125475102	-	NA	NA	NA	NA	RNF139	NA	chr8:125487008-125496268	inter
CUST_22832_PI429285431	5.6393476	P	5.4956036	P	1.10476843102246	0	lncRNA	24412-1_{1..2873}	lnc-PABPN1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-PABPN1L-1:1	chr16	 89003187	 89006059	-	lnc-PABPN1L-1	lnc-PABPN1L-1:1	ENSG00000261226.1	RP11-830F9.7	CBFA2T3	NA	chr16:88993187-89016059	inner
CUST_9680_PI429285431	0.91955125	A	0.9310231	A	0.992079850497835	0	lncRNA	11197-1_{1..453}	lnc-HACE1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HACE1-4:1	chr6	104786277	104786729	-	lnc-HACE1-4	lnc-HACE1-4:1	XLOC_005792	linc-ASCC3-3	NA	NA	NA	inter
LNCA_21_P0005952	0.9887811	A	0.9243604	A	1.04566497899786	0	lncRNA	TCONS_00015363	NA	NA	NA	NA	XLOC_006925	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006925), lincRNA [TCONS_00015363]"	chr8:129103354-129103413	hs|8q24.21	Agilent_HUMAN_G3V2	TCONS_00015363	TCONS_00015363	chr8	129103354	129103413	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21664_PI429285431	1.7422757	A	3.4147441	P	0.313716127025668	0	lncRNA	23274-1_{1..510}	lnc-PLA2G2C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLA2G2C-1:1	chr1	 20512853	 20513362	-	lnc-PLA2G2C-1	lnc-PLA2G2C-1:1	ENSG00000225986.1	RP3-340N1.5	UBXN10	NA	chr1:20512578-20519942	inner
CUST_15540_PI429285431	3.608289	P	3.7306516	P	0.918681957376547	0	lncRNA	17226-1_{1..825}	lnc-PPDPF-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPDPF-1:5	chr20	 62149046	 62149870	+	lnc-PPDPF-1	lnc-PPDPF-1:5	XLOC_013614	linc-PPDPF-1	PPDPF	NA	chr20:62152133-62153524	inter
CUST_50366_PI429285431	1.3096246	A	1.5484443	A	0.847438336457188	0	lncRNA	54080-1_{1..606}	hg19_lincRNAsTranscripts_TCONS_l2_00030216 range=chrX:55306546-55379889 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030216 range=chrX:55306546-55379889 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 55306546	 55307151	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6706_PI429285431	0.918074	A	1.1096588	A	0.875643298943546	0	lncRNA	6655-1_{1..404}	"transcript_id ""ENST00000446280.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446280.1"" | genecode_v17"	chr20	 47012066	 47012469	-	ENSG00000236874.1	ENST00000446280.1	RP1-66N13.1	RP1-66N13.1-001	NA	NA	NA	inter
CUST_41214_PI429285431	6.6148796	P	6.9205494	P	0.809066504047242	0	lncRNA	42100-1_{1..99}	ENST00000408263 ncrna:miRNA chromosome:GRCh37:X:154612749:154612847:-1 gene:ENSG00000221190 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408263 ncrna:miRNA chromosome:GRCh37:X:154612749:154612847:-1 gene:ENSG00000221190 gene_biotype:miRNA transcript_biotype:miRNA	chrX	154612749	154612847	-	ENSG00000221190	ENST00000408263	NA	NA	F8A2	"hg19_refFlat_F8A2:range=chrX:154611764-1546128795'pad=0,hg19_refFlat_F8A2:range=chrX:154611764-1546128795'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_F8A1:range=chrX:154114650-1541157655'pad=0,hg19_refFlat_F8A1:range=chrX:154114650-1541157655'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_F8A2:range=chrX:154687146-1546882615'pad=0,hg19_refFlat_F8A2:range=chrX:154687146-1546882615'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_F8A3:range=chrX:154611764-1546128795'pad=0,hg19_refFlat_F8A3:range=chrX:154611764-1546128795'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_F8A3:range=chrX:154687146-1546882615'pad=0,hg19_refFlat_F8A3:range=chrX:154687146-1546882615'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_F8A3:range=chrX:154114650-1541157655'pad=0,hg19_refFlat_F8A3:range=chrX:154114650-1541157655'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_F8A1:range=chrX:154611764-1546128795'pad=0,hg19_refFlat_F8A1:range=chrX:154611764-1546128795'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_F8A2:range=chrX:154114650-1541157655'pad=0,hg19_refFlat_F8A2:range=chrX:154114650-1541157655'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_F8A1:range=chrX:154687146-1546882615'pad=0,hg19_refFlat_F8A1:range=chrX:154687146-1546882615'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70chrX:154611764-154612879"	NA	inter
LNCA_21_P0002614	8.26164	P	8.175801	P	1.06130476423569	0	lncRNA	TCONS_00004912	NA	NA	NA	NA	XLOC_001701	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001701), lincRNA [TCONS_00004912]"	chr2:150146622-150146681	hs|2q23.2	Agilent_HUMAN_G3V2	TCONS_00004912	TCONS_00004912	chr2	150146622	150146681	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009954	0.97244066	A	0.9210068	A	1.03629436030108	0	lncRNA	TCONS_00028152	NA	NA	NA	NA	XLOC_013507	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013507), lincRNA [TCONS_00028152]"	chr20:31729369-31733749	hs|20q11.21	Agilent_HUMAN_G3V2	TCONS_00028152	TCONS_00028152	chr20	 31729369	 31733749	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41217_PI429285431	4.5107656	P	4.990877	P	0.716922263573841	0	lncRNA	42103-1_{1..61}	ENST00000411177 ncrna:miRNA chromosome:GRCh37:16:69599711:69599771:-1 gene:ENSG00000223109 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000411177 ncrna:miRNA chromosome:GRCh37:16:69599711:69599771:-1 gene:ENSG00000223109 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 69599711	 69599771	-	ENSG00000223109	ENST00000411177	NA	NA	NFAT5	NA	chr16:69598997-69609771	inter
CUST_48932_PI429285431	4.018572	P	4.2753563	P	0.836951367474011	0	lncRNA	52774-1_{1..1382}	hg19_lincRNAsTranscripts_TCONS_l2_00018912 range=chr3:148116481-148118862 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018912 range=chr3:148116481-148118862 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	148116481	148117862	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37591_PI429285431	1.2195499	A	2.1655436	A	0.519071901963899	0	lncRNA	38692-1_{1..1989}	n346069|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1619|NULL|-1.3161600|-0.1871267	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n346069|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1619|NULL|-1.3161600|-0.1871267	chr6	  2854299	  2856287	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45155_PI429285431	8.272499	P	8.485987	P	0.862449566608736	0	lncRNA	49632-2_{3001..3830}	"gi|299829248|ref|NR_033902.1| Homo sapiens KIAA1967 (KIAA1967), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299829248|ref|NR_033902.1| Homo sapiens KIAA1967 (KIAA1967), transcript variant 2, non-coding RNA"	Chr8	 22465145	 22465974	+	57805	NR_033902.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0012418	0.9514781	A	0.9178895	A	1.02355498110229	0	lncRNA	TCONS_l2_00019040	NA	NA	NA	NA	XLOC_l2_010029	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010029), lincRNA [TCONS_l2_00019040]"	chr3:185693734-185693793	hs|3q27.2	Agilent_HUMAN_G3V2	TCONS_l2_00019040	TCONS_l2_00019040	chr3	185693734	185693793	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9258_PI429285431	4.8576565	P	5.20749	P	0.784674651192502	0	lncRNA	10766-2_{3001..6000}	lnc-WRNIP1-2:23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRNIP1-2:23	chr6	  2416014	  2419013	+	lnc-WRNIP1-2	lnc-WRNIP1-2:23	ENSG00000250903	XLOC_005127	NA	NA	NA	inter
CUST_20172_PI429285431	0.9278665	A	1.5849459	A	0.634160797101074	0	lncRNA	21817-1_{1..467}	lnc-SLC39A11-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC39A11-1:2	chr17	 70599242	 70599708	-	lnc-SLC39A11-1	lnc-SLC39A11-1:2	ENSG00000227036.2	LINC00511	NA	NA	NA	inter
CUST_42742_PI429285431	0.9188286	A	0.9209922	A	0.998501430738103	0	lncRNA	45694-1_{1..73}	ENST00000516054 ncrna:snoRNA chromosome:GRCh37:12:33515518:33515590:-1 gene:ENSG00000251863 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516054 ncrna:snoRNA chromosome:GRCh37:12:33515518:33515590:-1 gene:ENSG00000251863 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 33515518	 33515590	-	ENSG00000251863	ENST00000516054	NA	NA	NA	NA	NA	inter
CUST_28200_PI429285431	6.4337506	P	6.462968	P	0.979951735095102	0	lncRNA	29829-1_{1..472}	n325483|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322624|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322624|-0.9261410|-0.2320523	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325483|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322624|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322624|-0.9261410|-0.2320523	chr2	  2854869	  2855340	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_427_PI429285431	0.9093307	A	0.9857105	A	0.948434599940995	0	lncRNA	419-1_{1..872}	"transcript_id ""ENST00000419817.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419817.1"" | genecode_v17"	chr1	145376327	145377198	-	ENSG00000233396.1	ENST00000419817.1	RP11-458D21.1	RP11-458D21.1-002	NBPF10	NA	chr1:145366327-145368684	inter
CUST_35167_PI429285431	1.4620953	A	1.9855119	A	0.695722266585645	0	lncRNA	36568-2_{3001..4291}	n342144|BX647721|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4630|NULL|-0.0134897|-0.3049047	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n342144|BX647721|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4630|NULL|-0.0134897|-0.3049047	chr10	 95337373	 95338663	+	NA	NA	NA	NA	O3FAR1	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.61;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40chr10:95326422-95348191"	NA	inner
CUST_23279_PI429285431	3.789678	P	3.261248	P	1.4423587071547	0	lncRNA	24850-1_{1..780}	lnc-GINS1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GINS1-1:5	chr20	 25650747	 25651526	+	lnc-GINS1-1	lnc-GINS1-1:5	ENSG00000213742.2	RP4-694B14.5	ZNF337	"hg19_refFlat_MED28:range=chr4:17616278-176254215'pad=0,hg19_refFlat_MED28:range=chr4:17616278-176254215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40chr20:25650496-25660980"	NA	inter
CUST_35544_PI429285431	10.633404	P	10.093425	P	1.45395135331837	0	lncRNA	36959-1_{1..980}	n342667|AL080124|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5169|NULL|1.1135000|-0.1806812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342667|AL080124|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5169|NULL|1.1135000|-0.1806812	chr17	 18602489	 18603468	+	NA	NA	NA	NA	FBXW10	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60chr17:18647326-18649425"	NA	inner
CUST_40139_PI429285431	0.90280294	A	0.89451283	A	1.00576280783034	0	lncRNA	40977-1_{1..1624}	n407749|NR_027268|lncRNA|Homosapiens||RefGeneNoncode|NR_027268||4.5312200|-0.3889910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407749|NR_027268|lncRNA|Homosapiens||RefGeneNoncode|NR_027268||4.5312200|-0.3889910	chr1	 28421445	 28423068	-	NA	NA	NA	NA	EYA3	NA	chr1:28411445-28415148	inter
CUST_1051_PI429285431	8.087753	P	7.877929	P	1.15654708360514	0	lncRNA	1041-1_{1..470}	"transcript_id ""ENST00000421820.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421820.1"" | genecode_v17"	chr2	121466839	121467308	-	ENSG00000229774.1	ENST00000421820.1	AC018866.1	AC018866.1-002	NA	"hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20"	NA	inter
CUST_9825_PI429285431	0.9247582	A	0.9271349	A	0.998353953319276	0	lncRNA	11346-1_{1..1508}	lnc-AC091801.1.1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC091801.1.1-5:2	chr7	  3140656	  3142163	-	lnc-AC091801.1.1-5	lnc-AC091801.1.1-5:2	XLOC_006338	linc-CARD11-10	NA	NA	NA	inter
CUST_38194_PI429285431	1.1886084	A	0.91712546	A	1.2070479095759	0	lncRNA	39262-1_{1..2047}	n381517|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kdj.1||-1.0113100|-0.2701031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n381517|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kdj.1||-1.0113100|-0.2701031	chr10	 86953176	 86955222	-	NA	NA	NA	NA	NA	"hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30"	NA	inter
CUST_4847_PI429285431	0.9035742	A	0.89986545	A	1.0025740167131	0	lncRNA	4790-1_{1..429}	"transcript_id ""ENST00000556026.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556026.1"" | genecode_v17"	chr14	 59360884	 59361312	+	ENSG00000258583.1	ENST00000556026.1	RP11-112J1.2	RP11-112J1.2-004	NA	NA	NA	inter
CUST_9663_PI429285431	2.5736234	A	2.6673613	A	0.937091676485878	0	lncRNA	11180-1_{1..256}	lnc-ARHGEF5-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGEF5-2:4	chr7	144857165	144857420	+	lnc-ARHGEF5-2	lnc-ARHGEF5-2:4	XLOC_006283	linc-CNTNAP2-1	NA	NA	NA	inter
CUST_7414_PI429285431	8.926424	P	8.520988	P	1.32448912665131	0	lncRNA	9057-1_{1..3000}	lnc-PPP1R12B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP1R12B-2:1	chr1	202594255	202597254	+	lnc-PPP1R12B-2	lnc-PPP1R12B-2:1	ENSG00000249227	ENST00000513983	SYT2	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50chr1:202584255-202604367"	NA	inner
CUST_12444_PI429285431	0.93486124	A	0.91999274	A	1.01035934919249	0	lncRNA	14057-1_{1..452}	lnc-C20orf196-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf196-3:4	chr20	  5483193	  5483644	+	lnc-C20orf196-3	lnc-C20orf196-3:4	XLOC_013448	linc-C20orf196-2	NA	NA	NA	inter
CUST_5629_PI429285431	0.9243562	A	1.1997089	A	0.826248298052072	0	lncRNA	5557-1_{1..1494}	"transcript_id ""ENST00000561510.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561510.1"" | genecode_v17"	chr16	 79747744	 79749237	+	ENSG00000260876.1	ENST00000561510.1	RP11-345M22.1	RP11-345M22.1-002	NA	NA	NA	inter
CUST_5837_PI429285431	3.8063242	P	4.4105616	P	0.65781900742423	0	lncRNA	5766-1_{1..636}	"transcript_id ""ENST00000583161.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583161.1"" | genecode_v17"	chr17	 37159501	 37160136	-	ENSG00000266588.1	ENST00000583161.1	RP1-56K13.5	RP1-56K13.5-002	NA	NA	NA	inter
LNCA_21_P0014283	1.6826234	A	0.91403556	A	1.70360142291842	0	lncRNA	XR_109129	XR_109129	XR_109129	NA	Hs.703894	LOC100506415	uncharacterized LOC100506415	NA	THC2502657	NA	"PREDICTED: Homo sapiens hypothetical LOC100506415 (LOC100506415), miscRNA [XR_109129]"	chr12:109562988-109562929	hs|12q24.11	Agilent_HUMAN_G3V2	XR_109129	XR_109129	chr12	109562929	109562988	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39345_PI429285431	10.073765	P	10.051989	P	1.01520846232201	0	lncRNA	40312-1_{1..2034}	n386428|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010kwk.2||1.3104500|-0.2085821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386428|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010kwk.2||1.3104500|-0.2085821	chr7	 32767561	 32769594	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12622_PI429285431	0.90355325	A	0.9043669	A	0.999436179802915	0	lncRNA	14237-1_{1..732}	lnc-DRD5-10:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DRD5-10:4	chr4	 11773329	 11774060	+	lnc-DRD5-10	lnc-DRD5-10:4	XLOC_003457	linc-CPEB2-10	NA	NA	NA	inter
CUST_51026_PI429285431	4.768158	P	4.7482157	P	1.01391892770494	0	lncRNA	54669-1_{1..815}	hg19_lincRNAsTranscripts_TCONS_l2_00007483 range=chr13:19622133-19630677 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007483 range=chr13:19622133-19630677 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 19622133	 19622947	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11404_PI429285431	1.8969538	A	1.2513832	A	1.56435788276261	0	lncRNA	12970-1_{1..816}	lnc-TP53I13-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TP53I13-1:2	chr17	 27895296	 27896111	+	lnc-TP53I13-1	lnc-TP53I13-1:2	XLOC_012161	linc-TP53I13	GIT1	NA	chr17:27900487-27905678	inter
CUST_45606_PI429285431	6.5980163	P	5.4620767	P	2.19761642762128	0	lncRNA	49993-2_{3001..4389}	"gi|216548548|ref|NR_024554.2| Homo sapiens Rho-related BTB domain containing 1 (RHOBTB1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|216548548|ref|NR_024554.2| Homo sapiens Rho-related BTB domain containing 1 (RHOBTB1), transcript variant 2, non-coding RNA"	Chr10	 62632196	 62633584	-	9886	NR_024554.2	NA	NA	NA	NA	NA	inter
CUST_37330_PI429285431	3.2383547	P	3.802956	P	0.676142247867911	0	lncRNA	38435-2_{3001..3901}	n345772|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1321|NULL|-1.4187300|-0.2045156	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345772|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1321|NULL|-1.4187300|-0.2045156	chr6	  6888867	  6889767	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22748_PI429285431	4.7698154	P	5.0143704	P	0.844076111675483	0	lncRNA	24331-1_{1..597}	lnc-PRKRIP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PRKRIP1-1:1	chr7	101995384	101995980	+	lnc-PRKRIP1-1	lnc-PRKRIP1-1:1	ENSG00000259313.1	CTA-313A17.5	SPDYE6	"hg19_refFlat_SPDYE1:range=chr7:44040625-440473675'pad=0,hg19_refFlat_SPDYE1:range=chr7:44040625-440473675'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.00;hg19_refFlat_SPDYE2:range=chr7:102292796-1023007125'pad=0,hg19_refFlat_SPDYE2:range=chr7:102292796-1023007125'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.00;hg19_refFlat_SPDYE2L:range=chr7:102292796-1023007125'pad=0,hg19_refFlat_SPDYE2L:range=chr7:102292796-1023007125'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.00;hg19_refFlat_SPDYE2L:range=chr7:102193703-1022016225'pad=0,hg19_refFlat_SPDYE2L:range=chr7:102193703-1022016225'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.00;hg19_refFlat_SPDYE2:range=chr7:102193703-1022016225'pad=0,hg19_refFlat_SPDYE2:range=chr7:102193703-1022016225'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.00;hg19_refFlat_SPDYE6:range=chr7:101988542-1019964685'pad=0,hg19_refFlat_SPDYE6:range=chr7:101988542-1019964685'pad=0 3'pad=0 strand=- repeatMasking=none,-97.00;hg19_refFlat_SPDYE5:range=chr7:75124435-751312615'pad=0,hg19_refFlat_SPDYE5:range=chr7:75124435-751312615'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.00chr7:101985384-101996889"	NA	inner
CUST_16537_PI429285431	2.4139202	A	3.0300684	A	0.652410451921984	0	lncRNA	18237-1_{1..212}	lnc-GYPC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GYPC-1:1	chr2	127496055	127496266	+	lnc-GYPC-1	lnc-GYPC-1:1	XLOC_001659	linc-PROC-4	NA	NA	NA	inter
CUST_15193_PI429285431	0.915046	A	0.9225389	A	0.994819781340714	0	lncRNA	16861-1_{1..1647}	lnc-PHOX2B-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHOX2B-2:5	chr4	 41883503	 41885149	-	lnc-PHOX2B-2	lnc-PHOX2B-2:5	XLOC_003937	linc-PHOX2B-2	NA	NA	NA	inter
CUST_22245_PI429285431	1.0870032	A	1.4761872	A	0.763561358855793	0	lncRNA	23846-1_{1..562}	lnc-ACOX3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ACOX3-3:1	chr4	  8862375	  8862936	-	lnc-ACOX3-3	lnc-ACOX3-3:1	ENSG00000258507.1	RP13-582L3.4	HMX1	NA	chr4:8868773-8872553	inter
CUST_51609_PI429285431	2.8983064	A	3.675577	P	0.583469601803377	0	lncRNA	55175-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00010741 range=chr17:37186851-37201661 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010741 range=chr17:37186851-37201661 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 37186851	 37189850	+	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60"	NA	inter
CUST_50784_PI429285431	2.2738848	A	2.1002653	A	1.12788462711142	0	lncRNA	54440-1_{1..863}	hg19_lincRNAsTranscripts_TCONS_00061601_H19 range=chr11:2016406-2017647 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00061601_H19 range=chr11:2016406-2017647 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	  2016406	  2017268	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51385_PI429285431	3.2518873	P	2.0179777	A	2.35203511625594	0	lncRNA	54975-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00009372 range=chr15:101087970-101098955 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009372 range=chr15:101087970-101098955 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	101090970	101093969	-	NA	NA	NA	NA	CERS3	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr15:101077970-101084925"	NA	inter
CUST_3372_PI429285431	1.2078073	A	1.2436993	A	0.975428479268584	0	lncRNA	3347-1_{1..3000}	"transcript_id ""ENST00000568063.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568063.1"" | genecode_v17"	chr9	 19926092	 19929091	+	ENSG00000261402.1	ENST00000568063.1	RP11-378I6.1	RP11-378I6.1-001	NA	NA	NA	inter
CUST_14138_PI429285431	2.3298292	A	2.5397415	A	0.864589787265702	0	lncRNA	15789-2_{3001..3566}	lnc-VSTM2B-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-VSTM2B-6:2	chr19	 29464108	 29464673	+	lnc-VSTM2B-6	lnc-VSTM2B-6:2	XLOC_013027	linc-VSTM2B-6	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
CUST_51645_PI429285431	6.0454655	P	6.6470175	P	0.659044597172073	0	lncRNA	55215-1_{1..1267}	hg19_lincRNAsTranscripts_TCONS_l2_00011379 range=chr17:58203930-58213083 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011379 range=chr17:58203930-58213083 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 58203930	 58205196	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35451_PI429285431	0.98400664	A	0.89822245	A	1.06126444455099	0	lncRNA	36857-1_{1..494}	n342527|AF139541|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5023|NULL|-0.0555798|-0.1791685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342527|AF139541|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5023|NULL|-0.0555798|-0.1791685	chr21	 31863781	 31864274	-	NA	NA	NA	NA	KRTAP19-4	NA	chr21:31869174-31869428	inner
CUST_44091_PI429285431	10.429366	P	9.642568	P	1.72524111127892	0	lncRNA	48758-1_{1..2660}	"gi|223941907|ref|NR_026923.1| Homo sapiens TAR DNA binding protein pseudogene (LOC643387), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223941907|ref|NR_026923.1| Homo sapiens TAR DNA binding protein pseudogene (LOC643387), non-coding RNA"	Chr2	239140327	239142986	+	643387	NR_026923.1	NA	NA	NA	NA	NA	inter
CUST_43360_PI429285431	10.084196	P	10.113507	P	0.979888159284259	0	lncRNA	48178-1_{1..3000}	"gi|282394039|ref|NR_033183.1| Homo sapiens mindbomb E3 ubiquitin protein ligase 2 (MIB2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|282394039|ref|NR_033183.1| Homo sapiens mindbomb E3 ubiquitin protein ligase 2 (MIB2), transcript variant 6, non-coding RNA"	Chr1	  1550795	  1553794	+	142678	NR_033183.1	NA	NA	NA	NA	NA	inter
CUST_41874_PI429285431	0.9088096	A	0.9024733	A	1.00440164739703	0	lncRNA	43543-1_{1..100}	ENST00000385022 ncrna:miRNA chromosome:GRCh37:X:133674538:133674637:-1 gene:ENSG00000207755 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385022 ncrna:miRNA chromosome:GRCh37:X:133674538:133674637:-1 gene:ENSG00000207755 gene_biotype:miRNA transcript_biotype:miRNA	chrX	133674538	133674637	-	ENSG00000207755	ENST00000385022	NA	NA	NA	NA	NA	inter
CUST_9044_PI429285431	5.279062	P	5.458931	P	0.882783151374935	0	lncRNA	10569-1_{1..467}	lnc-NPAS4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NPAS4-1:1	chr11	 66177313	 66177779	+	lnc-NPAS4-1	lnc-NPAS4-1:1	ENSG00000254510	RP11-867G23.10	NA	NA	NA	inter
LNCA_21_P0012539	1.5391424	A	1.9460405	A	0.754243309947395	0	lncRNA	ENST00000436687	NA	NA	NA	NA	XLOC_l2_010226	NA	ENST00000436687	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010226), lincRNA [TCONS_l2_00020127]"	chr3:63752805-63752746	hs|3p14.1	Agilent_HUMAN_G3V2	ENST00000436687	ENST00000436687	chr3	 63752746	 63752805	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40693_PI429285431	0.89727724	A	0.8954606	A	1.00125999201789	0	lncRNA	41428-1_{1..1498}	n410251|NR_037173_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037173_4||-0.0405552|-0.2883357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410251|NR_037173_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037173_4||-0.0405552|-0.2883357	chr6	  4098866	  4100363	+	NA	NA	NA	NA	C6orf201	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40chr6:4088866-4111281"	NA	inner
CUST_19843_PI429285431	4.9513397	P	4.977126	P	0.98228508600874	0	lncRNA	21500-1_{1..588}	lnc-LALBA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LALBA-1:1	chr12	 48894605	 48895192	-	lnc-LALBA-1	lnc-LALBA-1:1	ENSG00000258121.1	RP11-722P11.4	C12orf54	"hg19_refFlat_C12orf54:range=chr12:48877080-488887225'pad=0,hg19_refFlat_C12orf54:range=chr12:48877080-488887225'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40chr12:48884605-48890297"	NA	inter
CUST_9937_PI429285431	1.2295913	A	0.9268807	A	1.23345971692639	0	lncRNA	11460-1_{1..498}	lnc-RBFOX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RBFOX1-1:1	chr16	  8149269	  8149766	+	lnc-RBFOX1-1	lnc-RBFOX1-1:1	XLOC_011635	linc-C16orf68-2	NA	NA	NA	inter
CUST_26853_PI429285431	1.8827764	A	2.4978888	A	0.652879025925761	0	lncRNA	28366-1_{1..2790}	n323924|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000105117|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000105117|1.1473300|-0.3010026	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323924|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000105117|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000105117|1.1473300|-0.3010026	chrX	  2537432	  2540221	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80"	NA	inter
CUST_33885_PI429285431	3.514443	P	1.1050904	A	5.31235883501371	0	lncRNA	35428-2_{3001..4248}	n340675|D84223|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3138|NULL|15.7007000|-0.1941171	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340675|D84223|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3138|NULL|15.7007000|-0.1941171	chr5	145496027	145497274	-	NA	NA	NA	NA	LARS	NA	chr5:145492589-145562294	inner
CUST_48124_PI429285431	3.9531705	P	4.065065	P	0.925372095274375	0	lncRNA	51993-2_{3001..3823}	"gi|410169835|ref|XR_111094.3| PREDICTED: Homo sapiens uncharacterized LOC100133190 (LOC100133190), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410169835|ref|XR_111094.3| PREDICTED: Homo sapiens uncharacterized LOC100133190 (LOC100133190), misc_RNA"	NA	NA	NA	NA	NA	XR_111094.3	NA	NA	NA	"hg19_refFlat_C10orf116:range=chr10:88728302-887303395'pad=0,hg19_refFlat_C10orf116:range=chr10:88728302-887303395'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.10"	NA	Unknown
CUST_44325_PI429285431	2.7312732	A	1.2235177	A	2.84367285034116	0	lncRNA	48957-1_{1..3000}	"gi|410170473|ref|XR_171093.1| PREDICTED: Homo sapiens uncharacterized LOC101060069 (LOC101060069), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410170473|ref|XR_171093.1| PREDICTED: Homo sapiens uncharacterized LOC101060069 (LOC101060069), misc_RNA"	NA	NA	NA	NA	NA	XR_171093.1	NA	NA	NA	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-30.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0,hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80"	NA	Unknown
CUST_14986_PI429285431	1.4565113	A	1.7126156	A	0.837345949184623	0	lncRNA	16649-1_{1..457}	lnc-CKAP2L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CKAP2L-1:1	chr2	113403007	113403463	-	lnc-CKAP2L-1	lnc-CKAP2L-1:1	XLOC_002275	linc-RGPD8-2	SLC20A1	NA	chr2:113403434-113413306	inter
CUST_11550_PI429285431	4.030754	P	1.4530089	A	5.97005863083824	0	lncRNA	13123-1_{1..364}	lnc-WARS2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WARS2-2:1	chr1	119870430	119870793	-	lnc-WARS2-2	lnc-WARS2-2:1	XLOC_000983	linc-WARS2-1	NA	NA	NA	inter
CUST_16222_PI429285431	0.94362664	A	0.9210037	A	1.01580461955601	0	lncRNA	17928-1_{1..707}	lnc-DMRTA1-7:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRTA1-7:4	chr9	 24552919	 24553625	+	lnc-DMRTA1-7	lnc-DMRTA1-7:4	XLOC_007304	linc-IFT74-3	NA	"hg19_refFlat_IZUMO3:range=chr9:24543227-245456475'pad=0,hg19_refFlat_IZUMO3:range=chr9:24543227-245456475'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40"	NA	inter
CUST_1475_PI429285431	4.5489306	P	3.4263148	P	2.17741409252048	0	lncRNA	1462-1_{1..2964}	"transcript_id ""ENST00000602556.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602556.1"" | genecode_v17"	chr3	141663270	141666233	-	ENSG00000269905.1	ENST00000602556.1	RP11-271K21.11	RP11-271K21.11-001	TFDP2	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50chr3:141663270-141676233"	NA	inner
CUST_50375_PI429285431	6.847673	P	6.885161	P	0.97434999558343	0	lncRNA	54088-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00030323 range=chrX:106773652-106848480 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030323 range=chrX:106773652-106848480 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	106776652	106779651	+	NA	NA	NA	NA	FRMPD3	NA	chrX:106765680-106848479	inter
CUST_40559_PI429285431	1.111965	A	0.9201699	A	1.14218401566429	0	lncRNA	41316-2_{3001..5499}	n409752|NR_034154|lncRNA|Homosapiens||RefGeneNoncode|NR_034154||1.0805000|-0.2479988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409752|NR_034154|lncRNA|Homosapiens||RefGeneNoncode|NR_034154||1.0805000|-0.2479988	chr11	111167113	111169611	-	NA	NA	NA	NA	C11orf53	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90chr11:111154113-111156973"	NA	inter
CUST_16119_PI429285431	0.9141809	A	0.9094188	A	1.00330628994732	0	lncRNA	17825-1_{1..435}	lnc-ATP1A1OS-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP1A1OS-4:1	chr1	116784629	116785063	-	lnc-ATP1A1OS-4	lnc-ATP1A1OS-4:1	XLOC_000973	linc-NHLH2-6	NA	NA	NA	inter
CUST_49866_PI429285431	6.4045086	P	6.5449915	P	0.907215440636176	0	lncRNA	53618-1_{1..1963}	hg19_lincRNAsTranscripts_TCONS_l2_00026029 range=chr7:76589101-76632767 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026029 range=chr7:76589101-76632767 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 76589101	 76591063	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40400_PI429285431	0.988719	A	0.90762216	A	1.05782196687161	0	lncRNA	41189-2_{3001..6000}	n409263|NR_033435|lncRNA|Homosapiens||RefGeneNoncode|NR_033435||4.3885800|-0.3689983	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409263|NR_033435|lncRNA|Homosapiens||RefGeneNoncode|NR_033435||4.3885800|-0.3689983	chr7	 11016498	 11019497	+	NA	NA	NA	NA	PHF14	NA	chr7:11013499-11157376	inter
CUST_2824_PI429285431	1.0641893	A	0.9256128	A	1.10081840780848	0	lncRNA	2807-1_{1..229}	"transcript_id ""ENST00000436501.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436501.1"" | genecode_v17"	chr7	 46516055	 46516283	-	ENSG00000240355.1	ENST00000436501.1	AC004869.3	AC004869.3-001	NA	NA	NA	inter
CUST_50677_PI429285431	3.433102	P	1.90904	A	2.87599665935466	0	lncRNA	54351-1_{1..1053}	hg19_lincRNAsTranscripts_TCONS_l2_00003534 range=chr10:46201928-46217888 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003534 range=chr10:46201928-46217888 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 46201928	 46202980	-	NA	NA	NA	NA	FAM21C	NA	chr10:46222648-46227888	inter
CUST_34582_PI429285431	1.3181689	A	1.6254447	A	0.808166356880714	0	lncRNA	36040-1_{1..2597}	n341466|AK092563|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3936|NULL|-0.5801920|-0.1986886	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341466|AK092563|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3936|NULL|-0.5801920|-0.1986886	chr8	 27558710	 27561306	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31037_PI429285431	12.116184	P	12.0694895	P	1.03289564219604	0	lncRNA	32826-1_{1..436}	n337252|BC127729|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389356|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389356|1.1092000|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337252|BC127729|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389356|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389356|1.1092000|-1.0000000	chr16	  2070017	  2070452	+	NA	NA	NA	NA	SLC9A3R2	NA	chr16:2076888-2080674	inner
CUST_34233_PI429285431	0.9957809	A	1.0154129	A	0.986484303006645	0	lncRNA	35742-1_{1..3000}	n341092|BC040571|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3558|NULL|-1.2811300|-0.4407345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341092|BC040571|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3558|NULL|-1.2811300|-0.4407345	chr11	 89956320	 89959319	+	NA	NA	NA	NA	CHORDC1	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30chr11:89946320-89956532"	NA	inner
CUST_36577_PI429285431	0.9182858	A	0.93268436	A	0.990069316866092	0	lncRNA	37771-1_{1..3000}	n345073|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_622|NULL|-1.3948200|-0.3445521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345073|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_622|NULL|-1.3948200|-0.3445521	chrX	113022023	113025022	-	NA	NA	NA	NA	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-21.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-26.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00"	NA	inter
CUST_33989_PI429285431	3.4242857	P	3.151052	A	1.20851359283435	0	lncRNA	35526-1_{1..2197}	n340802|AK057938|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3265|NULL|-1.1598500|-0.3030675	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340802|AK057938|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3265|NULL|-1.1598500|-0.3030675	chr6	  2562180	  2564376	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15147_PI429285431	1.6532547	A	2.6619186	A	0.497006319130723	0	lncRNA	16810-2_{3001..4390}	lnc-TSHZ2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSHZ2-5:2	chr20	 51266029	 51267418	+	lnc-TSHZ2-5	lnc-TSHZ2-5:2	XLOC_013566	linc-TSHZ2-2	NA	NA	NA	inter
CUST_13836_PI429285431	1.4403285	A	0.9186712	A	1.43560345466386	0	lncRNA	15479-1_{1..412}	lnc-MAGEE2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAGEE2-1:2	chrX	 75367988	 75368399	-	lnc-MAGEE2-1	lnc-MAGEE2-1:2	XLOC_008190	linc-MAGEE2	NA	NA	NA	inter
CUST_36345_PI429285431	2.357083	A	2.7671933	P	0.752565834736831	0	lncRNA	37573-2_{3001..4236}	n344870|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_419|NULL|-1.3413200|-0.3587940	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344870|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_419|NULL|-1.3413200|-0.3587940	chr6	 22591789	 22593024	-	NA	NA	NA	NA	NA	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10"	NA	inter
CUST_9941_PI429285431	1.0755765	A	0.993466	A	1.05856547022486	0	lncRNA	11464-1_{1..420}	lnc-USP12-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP12-4:1	chr13	 27810835	 27811254	-	lnc-USP12-4	lnc-USP12-4:1	XLOC_010543	linc-USP12-2	NA	NA	NA	inter
CUST_24568_PI429285431	7.1461086	P	7.380934	P	0.849787837211997	0	lncRNA	26116-1_{1..723}	lnc-WDR77-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR77-1:2	chr1	111983314	111984036	-	lnc-WDR77-1	lnc-WDR77-1:2	ENSG00000243960.1	RP11-552M11.4	WDR77	NA	chr1:111982512-111991830	inner
LNCA_21_P0001513	2.563498	A	2.3733704	A	1.1408646158392	0	lncRNA	THC2695938	NA	NA	NA	NA	XLOC_000852	NA	NA	THC2695938	NA	"BROAD Institute lincRNA (XLOC_000852), lincRNA [TCONS_00001508]"	chr1:059760792-059760733	hs|1p32.1	Agilent_HUMAN_G3V2	THC2695938	THC2695938	chr1	 59760733	 59760792	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00319929	4.642349	P	4.126074	P	1.43025758960899	0	lncRNA	BX649107	NA	BX649107	NA	Hs.513113	XLOC_010507	NA	NA	THC2605112	NA	"BROAD Institute lincRNA (XLOC_010507), lincRNA [TCONS_00021603]"	chr13:112975813-112975872	hs|13q34	Agilent_HUMAN_G3V2	BX649107	BX649107	chr13	112975813	112975872	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33863_PI429285431	5.1907663	P	5.9464664	P	0.592258908856963	0	lncRNA	35407-1_{1..1823}	n340651|BC038432|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3113|NULL|-1.0976600|-0.1266769	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340651|BC038432|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3113|NULL|-1.0976600|-0.1266769	chr17	 38497118	 38498940	-	NA	NA	NA	NA	RARA	NA	chr17:38487118-38509388	inner
CUST_9788_PI429285431	1.7484714	A	2.3615901	A	0.653781881124528	0	lncRNA	11304-1_{1..403}	lnc-KCNK13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNK13-1:1	chr14	 90527706	 90528108	+	lnc-KCNK13-1	lnc-KCNK13-1:1	XLOC_010901	linc-KCNK13	KCNK13	NA	chr14:90528108-90538063	inter
CUST_50650_PI429285431	0.9266194	A	1.1088107	A	0.881363282219639	0	lncRNA	54328-2_{3001..4261}	hg19_lincRNAsTranscripts_TCONS_l2_00002972 range=chr10:37537314-37591595 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002972 range=chr10:37537314-37591595 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 37540314	 37541574	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005456	4.4453773	P	4.7437587	P	0.813164196475675	0	lncRNA	TCONS_00013659	NA	NA	NA	NA	XLOC_006321	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006321), lincRNA [TCONS_00013659]"	chr7:158770282-158770341	hs|7q36.3	Agilent_HUMAN_G3V2	TCONS_00013659	TCONS_00013659	chr7	158770282	158770341	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24180_PI429285431	4.1095786	P	4.4631405	P	0.782649411063522	0	lncRNA	25731-1_{1..287}	lnc-PCYOX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PCYOX1-1:1	chr2	 70529087	 70529373	+	lnc-PCYOX1-1	lnc-PCYOX1-1:1	ENSG00000233849.1	AC022201.5	SNRPG	"hg19_refFlat_FAM136A:range=chr2:70524421-705291435'pad=0,hg19_refFlat_FAM136A:range=chr2:70524421-705291435'pad=0 3'pad=0 strand=- repeatMasking=none,-99.00chr2:70519087-70520869"	NA	inner
CUST_13342_PI429285431	2.98616	A	3.1612985	A	0.88568248871862	0	lncRNA	14979-1_{1..795}	lnc-PRDM11-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRDM11-3:5	chr11	 45377947	 45378741	+	lnc-PRDM11-3	lnc-PRDM11-3:5	XLOC_009120	linc-SLC35C1-5	NA	NA	NA	inter
CUST_29220_PI429285431	3.530545	P	4.241915	P	0.610739897673518	0	lncRNA	30969-1_{1..581}	n326743|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099678|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099678|-1.2613400|-0.2768348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326743|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099678|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099678|-1.2613400|-0.2768348	chr1	   730174	   730754	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7089_PI429285431	8.313017	P	8.339713	P	0.981665895501375	0	lncRNA	7024-1_{1..544}	"transcript_id ""ENST00000602737.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602737.1"" | genecode_v17"	chrX	 73164162	 73164705	+	ENSG00000225470.2	ENST00000602737.1	JPX	JPX-005	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
CUST_45107_PI429285431	0.9567966	A	0.9201032	A	1.02576012873119	0	lncRNA	49588-1_{1..799}	"gi|300244556|ref|NR_034012.1| Homo sapiens WDR86 antisense RNA 1 (WDR86-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300244556|ref|NR_034012.1| Homo sapiens WDR86 antisense RNA 1 (WDR86-AS1), non-coding RNA"	Chr7	151106322	151107120	+	100131176	NR_034012.1	NA	NA	NA	NA	NA	inter
CUST_9591_PI429285431	1.8386614	A	2.7039227	A	0.548946972965619	0	lncRNA	11107-1_{1..3000}	lnc-MSRB3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-MSRB3-2:2	chr12	 66006472	 66009471	+	lnc-MSRB3-2	lnc-MSRB3-2:2	XLOC_009788	linc-HMGA2	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_25325_PI429285431	2.6967385	A	1.9965539	A	1.62471266947287	0	lncRNA	26857-1_{1..808}	lnc-RPRML-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPRML-3:9	chr17	 45144780	 45145587	-	lnc-RPRML-3	lnc-RPRML-3:9	ENSG00000262879.1	RP11-156P1.3	NA	"hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0,hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0,hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0,hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0,hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30"	NA	inter
CUST_5068_PI429285431	0.93064475	A	0.91147244	A	1.01337792693077	0	lncRNA	5008-1_{1..584}	"transcript_id ""ENST00000555713.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555713.1"" | genecode_v17"	chr14	105370679	105371262	+	ENSG00000259067.1	ENST00000555713.1	CTD-3051D23.3	CTD-3051D23.3-001	KIAA0284	NA	chr14:105360679-105363107	inter
CUST_33465_PI429285431	3.0436792	A	1.1813866	A	3.63584979540638	0	lncRNA	35038-1_{1..1493}	n340200|AK026192|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2661|NULL|-0.9532140|-0.2579000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340200|AK026192|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2661|NULL|-0.9532140|-0.2579000	chr4	110967001	110968493	-	NA	NA	NA	NA	ELOVL6	NA	chr4:110970229-110978478	inter
CUST_18752_PI429285431	1.3473973	A	0.9241483	A	1.34094401002748	0	lncRNA	20448-1_{1..872}	lnc-TMEM75-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM75-1:3	chr8	128746071	128746942	-	lnc-TMEM75-1	lnc-TMEM75-1:3	ENSG00000249375	RP11-1136L8.1	MYC	NA	chr8:128748315-128753680	inter
CUST_211_PI429201921	0.9263825	A	0.91093045	A	1.01076810810487	0	lncRNA	167-1_{1..3000}	TC0Y000281.hg.1	TCONS_l2_00031006-XLOC_l2_015912 // Broad TUCP // linc-SPRY3-4 chrY:+:28269866-28275354 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:+:28269866-28275354	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031006-XLOC_l2_015912	linc-SPRY3-4	chrY	 28269866	 28275354	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9573_PI429285431	0.9248666	A	0.9119271	A	1.00900931974357	0	lncRNA	11089-1_{1..228}	lnc-EVX1-14:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EVX1-14:4	chr7	 27448428	 27448655	+	lnc-EVX1-14	lnc-EVX1-14:4	XLOC_006028	linc-TAX1BP1	NA	NA	NA	inter
CUST_2549_PI429285431	0.9111714	A	0.88863456	A	1.01574399817346	0	lncRNA	2537-1_{1..397}	"transcript_id ""ENST00000418403.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418403.1"" | genecode_v17"	chr6	 71104590	 71104986	+	ENSG00000237643.1	ENST00000418403.1	RP11-462G2.1	RP11-462G2.1-001	NA	NA	NA	inter
CUST_47495_PI429285431	0.9213022	A	1.0175327	A	0.935474024808402	0	lncRNA	51511-2_{3001..5125}	"gi|209180487|ref|NR_002727.2| Homo sapiens RFPL1 antisense RNA 1 (RFPL1-AS1), antisense RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|209180487|ref|NR_002727.2| Homo sapiens RFPL1 antisense RNA 1 (RFPL1-AS1), antisense RNA"	NA	NA	NA	NA	NA	NR_002727.2	NA	NA	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RFPL3:range=chr22:32754059-327568195'pad=0,hg19_refFlat_RFPL3:range=chr22:32754059-327568195'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_RFPL2:range=chr22:32586759-325984385'pad=0,hg19_refFlat_RFPL2:range=chr22:32586759-325984385'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RFPL2:range=chr22:32586759-325892615'pad=0,hg19_refFlat_RFPL2:range=chr22:32586759-325892615'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.52;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RFPL2:range=chr22:32586759-325891745'pad=0,hg19_refFlat_RFPL2:range=chr22:32586759-325891745'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_RFPL1:range=chr22:29834781-298381115'pad=0,hg19_refFlat_RFPL1:range=chr22:29834781-298381115'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RFPL3:range=chr22:32754146-327568195'pad=0,hg19_refFlat_RFPL3:range=chr22:32754146-327568195'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90"	NA	Unknown
CUST_45409_PI429285431	1.0121281	A	0.91025865	A	1.07316317107308	0	lncRNA	49835-1_{1..1110}	"gi|300796668|ref|NR_034087.1| Homo sapiens leucine rich repeat containing 37, member A5, pseudogene (LRRC37A5P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300796668|ref|NR_034087.1| Homo sapiens leucine rich repeat containing 37, member A5, pseudogene (LRRC37A5P), non-coding RNA"	Chr9	114365111	114366220	-	652972	NR_034087.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003432	10.40721	P	9.883131	P	1.43801527443346	0	lncRNA	ENST00000509548	NA	NA	NA	NA	XLOC_003776	NA	ENST00000509548	NA	NA	"BROAD Institute lincRNA (XLOC_003776), lincRNA [TCONS_00007680]"	chr4:171293403-171293462	hs|4q33	Agilent_HUMAN_G3V2	ENST00000509548	ENST00000509548	chr4	171293403	171293462	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34680_PI429285431	4.7877603	P	4.902486	P	0.923557890349922	0	lncRNA	36132-2_{3001..3076}	n341585|AK093952|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4056|NULL|-1.0897600|-0.2628309	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341585|AK093952|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4056|NULL|-1.0897600|-0.2628309	chr8	110659343	110659418	+	NA	NA	NA	NA	SYBU	NA	chr8:110646343-110670313	inner
CUST_4999_PI429285431	2.3953428	A	1.5474659	A	1.7998502782578	0	lncRNA	4943-1_{1..3000}	"transcript_id ""ENST00000522771.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522771.1"" | genecode_v17"	chr14	101292456	101295455	+	ENSG00000214548.9	ENST00000522771.1	MEG3	MEG3-015	NA	NA	NA	inter
CUST_4693_PI429285431	0.8979051	A	0.8954852	A	1.00167875439535	0	lncRNA	4640-1_{1..439}	"transcript_id ""ENST00000411690.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411690.2"" | genecode_v17"	chr13	110705632	110706070	+	ENSG00000231428.2	ENST00000411690.2	RP11-472K17.1	RP11-472K17.1-001	NA	NA	NA	inter
CUST_9716_PI429285431	3.2865815	P	3.889913	P	0.658232196182902	0	lncRNA	11232-1_{1..349}	lnc-ACBD5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACBD5-1:1	chr10	 27548287	 27548635	-	lnc-ACBD5-1	lnc-ACBD5-1:1	XLOC_008757	linc-ACBD5-1	NA	NA	NA	inter
CUST_2450_PI429285431	12.1377325	P	12.359347	P	0.85760516518547	0	lncRNA	2442-1_{1..624}	"transcript_id ""ENST00000519603.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519603.1"" | genecode_v17"	chr5	178804532	178805155	-	ENSG00000253163.1	ENST00000519603.1	RP11-443C10.1	RP11-443C10.1-001	NA	NA	NA	inter
CUST_8529_PI429285431	1.0346931	A	0.9046793	A	1.0943041687018	0	lncRNA	10090-1_{1..756}	lnc-ABLIM3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABLIM3-1:1	chr5	148450910	148451665	+	lnc-ABLIM3-1	lnc-ABLIM3-1:1	ENSG00000250072	CTC-529P8.1	SH3TC2	NA	chr5:148440910-148442737	inter
CUST_15820_PI429285431	4.1812897	P	4.3473988	P	0.89124309544462	0	lncRNA	17510-1_{1..3000}	lnc-NAF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAF1-1:1	chr4	164040682	164043681	-	lnc-NAF1-1	lnc-NAF1-1:1	XLOC_004144	linc-FSTL5-2	NAF1	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30chr4:164047860-164051637"	NA	inter
CUST_40810_PI429285431	5.167467	P	4.8271713	P	1.26601605461454	0	lncRNA	41515-2_{3001..4060}	n410578|NR_037846|lncRNA|Homosapiens||RefGeneNoncode|NR_037846||0.2812970|-0.2672888	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410578|NR_037846|lncRNA|Homosapiens||RefGeneNoncode|NR_037846||0.2812970|-0.2672888	chr6	  2996298	  2997357	+	NA	NA	NA	NA	NQO2	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10chr6:3000067-3019994"	NA	inner
CUST_9551_PI429285431	4.049657	P	3.786231	P	1.20032576308	0	lncRNA	11066-1_{1..883}	lnc-BTBD19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTBD19-1:1	chr1	 45282569	 45283451	+	lnc-BTBD19-1	lnc-BTBD19-1:1	XLOC_000166	linc-UROD	PTCH2	NA	chr1:45285516-45293445	inter
CUST_3741_PI429285431	4.5440774	P	4.4811687	P	1.04456965587375	0	lncRNA	3710-1_{1..520}	"transcript_id ""ENST00000434440.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434440.1"" | genecode_v17"	chr10	 80053599	 80054118	+	ENSG00000229543.1	ENST00000434440.1	RP11-90J7.2	RP11-90J7.2-001	NA	NA	NA	inter
CUST_5179_PI429285431	0.92053944	A	0.90890074	A	1.00809996069683	0	lncRNA	5120-1_{1..540}	"transcript_id ""ENST00000559165.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559165.1"" | genecode_v17"	chr15	 49021277	 49021816	-	ENSG00000259469.1	ENST00000559165.1	RP11-227D13.4	RP11-227D13.4-001	CEP152	NA	chr15:49030135-49032041	inter
CUST_306_PI429285431	1.7635338	A	2.3876343	A	0.648824183964576	0	lncRNA	299-1_{1..3000}	"transcript_id ""ENST00000461990.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000461990.1"" | genecode_v17"	chr1	 87595553	 87598552	+	ENSG00000267272.1	ENST00000461990.1	RP5-1052I5.1	RP5-1052I5.1-002	NA	NA	NA	inter
CUST_26044_PI429285431	4.255285	P	4.4165735	P	0.894226062867604	0	lncRNA	27559-1_{1..374}	lnc-FAM174B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM174B-1:2	chr15	 93139532	 93139905	-	lnc-FAM174B-1	lnc-FAM174B-1:2	ENSG00000260337.1	RP11-386M24.6	NA	NA	NA	inter
CUST_3060_PI429285431	3.4867609	P	2.8122127	A	1.59609685452958	0	lncRNA	3039-1_{1..784}	"transcript_id ""ENST00000523336.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523336.1"" | genecode_v17"	chr8	 33865375	 33866158	+	ENSG00000253642.1	ENST00000523336.1	RP11-317N12.1	RP11-317N12.1-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00"	NA	inter
CUST_26011_PI429285431	1.6228784	A	0.91804093	A	1.62996102759759	0	lncRNA	27530-1_{1..1893}	lnc-NIN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NIN-1:1	chr14	 51353120	 51355012	-	lnc-NIN-1	lnc-NIN-1:1	ENSG00000258398.1	RP11-218E20.6	ABHD12B	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ABHD12B:range=chr14:51338893-513710845'pad=0,hg19_refFlat_ABHD12B:range=chr14:51338893-513710845'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60chr14:51343120-51363947"	NA	inner
CUST_51537_PI429285431	3.9962502	P	4.1160684	P	0.92030361460274	0	lncRNA	55104-1_{1..840}	hg19_lincRNAsTranscripts_TCONS_l2_00011512 range=chr17:655907-658128 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011512 range=chr17:655907-658128 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	   655907	   656746	+	NA	NA	NA	NA	GEMIN4	NA	chr17:647661-655501	inter
CUST_8256_PI429285431	11.203019	P	11.318188	P	0.923274150330725	0	lncRNA	9845-1_{1..1751}	lnc-GNA14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNA14-1:1	chr9	 79810393	 79812143	-	lnc-GNA14-1	lnc-GNA14-1:1	ENSG00000248731	ENST00000505936	VPS13A	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90chr9:79800393-79820652"	NA	inner
CUST_36649_PI429285431	0.9589051	A	1.1480377	A	0.877132926586121	0	lncRNA	37840-1_{1..1757}	n345144|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_693|NULL|-1.2721700|-0.2082702	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345144|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_693|NULL|-1.2721700|-0.2082702	chr11	 65068431	 65070187	-	NA	NA	NA	NA	POLA2	NA	chr11:65058431-65065088	inter
CUST_3797_PI429285431	4.1995525	P	4.228325	P	0.980253980369115	0	lncRNA	3765-1_{1..487}	"transcript_id ""ENST00000597234.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597234.1"" | genecode_v17"	chr10	109691996	109692482	-	ENSG00000229981.2	ENST00000597234.1	RP11-215N21.1	RP11-215N21.1-008	NA	NA	NA	inter
CUST_22115_PI429285431	0.9342252	A	1.2053986	A	0.828645302197367	0	lncRNA	23720-1_{1..578}	lnc-CHN2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHN2-3:1	chr7	 29028020	 29028597	+	lnc-CHN2-3	lnc-CHN2-3:1	ENSG00000233517.1	AC005162.5	CPVL	NA	chr7:29035247-29038515	inter
CUST_20171_PI429285431	1.6969496	A	1.9224292	A	0.855310644601135	0	lncRNA	21816-1_{1..597}	lnc-PPEF1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPEF1-1:2	chrX	 18912265	 18912861	+	lnc-PPEF1-1	lnc-PPEF1-1:2	ENSG00000237836.1	RP3-499B10.4	PHKA2	"hg19_refFlat_PHKA2:range=chrX:18911603-190020505'pad=0,hg19_refFlat_PHKA2:range=chrX:18911603-190020505'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50chrX:18910416-18922615"	NA	inner
CUST_11261_PI429285431	0.9305926	A	1.0009792	A	0.952382753173351	0	lncRNA	12820-1_{1..336}	lnc-VWDE-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VWDE-4:1	chr7	 12912992	 12913327	-	lnc-VWDE-4	lnc-VWDE-4:1	XLOC_006357	linc-VWDE-2	NA	NA	NA	inter
CUST_973_PI429285431	0.90793633	A	1.1169986	A	0.86509935012315	0	lncRNA	962-1_{1..517}	"transcript_id ""ENST00000414647.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414647.1"" | genecode_v17"	chr2	101223490	101224006	+	ENSG00000234988.1	ENST00000414647.1	AC068538.4	AC068538.4-001	NA	NA	NA	inter
CUST_33025_PI429285431	10.749528	P	10.297377	P	1.36807848665085	0	lncRNA	34640-1_{1..1628}	n339711|AF116716|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2156|NULL|0.2761600|-0.2854932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339711|AF116716|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2156|NULL|0.2761600|-0.2854932	chr20	 45919357	 45920984	+	NA	NA	NA	NA	ZMYND8	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZMYND8:range=chr20:45839406-459854145'pad=0,hg19_refFlat_ZMYND8:range=chr20:45839406-459854145'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80chr20:45909357-45930745"	NA	inner
CUST_40753_PI429285431	11.981297	P	11.6577425	P	1.25140996725343	0	lncRNA	41480-1_{1..3000}	n410471|NR_037616|lncRNA|Homosapiens||RefGeneNoncode|NR_037616||2.2888500|-0.2209728	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410471|NR_037616|lncRNA|Homosapiens||RefGeneNoncode|NR_037616||2.2888500|-0.2209728	chr6	  7881482	  7884481	-	NA	NA	NA	NA	BMP6	NA	chr6:7871482-7881961	inter
CUST_44331_PI429285431	0.9159571	A	0.91818637	A	0.998455981010513	0	lncRNA	48960-1_{1..2621}	"gi|226529339|ref|NR_027481.1| Homo sapiens zinc finger protein 876, pseudogene (ZNF876P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226529339|ref|NR_027481.1| Homo sapiens zinc finger protein 876, pseudogene (ZNF876P), non-coding RNA"	NW_004775427.1	   202600	   205220	+	642280	NR_027481.1	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60"	NA	Unknown
CUST_43925_PI429285431	4.9363623	P	3.1089664	P	3.54895898156028	0	lncRNA	48636-3_{6001..6913}	"gi|254039637|ref|NR_028063.1| Homo sapiens GRIP and coiled-coil domain containing 2 (GCC2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254039637|ref|NR_028063.1| Homo sapiens GRIP and coiled-coil domain containing 2 (GCC2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_028063.1	NA	NA	NA	NA	NA	Unknown
CUST_5349_PI429285431	0.9301575	A	0.9198799	A	1.00714932472693	0	lncRNA	5287-1_{1..377}	"transcript_id ""ENST00000559611.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559611.1"" | genecode_v17"	chr15	 96936403	 96936779	-	ENSG00000259542.1	ENST00000559611.1	RP11-522B15.4	RP11-522B15.4-004	NA	NA	NA	inter
CUST_24252_PI429285431	2.5103452	A	2.3947113	A	1.08345099415177	0	lncRNA	25803-1_{1..2552}	lnc-AL353997.5.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL353997.5.1-1:3	chr17	 18328108	 18330659	+	lnc-AL353997.5.1-1	lnc-AL353997.5.1-1:3	ENSG00000205266.5	AL353997.3	LGALS9C	NA	chr17:18330120-18338411	inter
CUST_3168_PI429285431	1.2606682	A	0.9172065	A	1.26879738257853	0	lncRNA	3147-1_{1..1134}	"transcript_id ""ENST00000517343.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517343.1"" | genecode_v17"	chr8	 70337270	 70338403	-	ENSG00000253479.1	ENST00000517343.1	RP11-744J10.3	RP11-744J10.3-001	NA	NA	NA	inter
CUST_26157_PI429285431	3.7119906	P	4.23827	P	0.694343084683363	0	lncRNA	27668-1_{1..680}	lnc-C17orf62-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C17orf62-3:1	chr17	 80358579	 80359258	-	lnc-C17orf62-3	lnc-C17orf62-3:1	ENSG00000264812.1	RP13-20L14.4	C17orf101	"hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-17.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70chr17:80348579-80369258"	NA	inner
CUST_25410_PI429285431	6.6040583	P	7.0446653	P	0.736824531616247	0	lncRNA	26940-2_{3001..3902}	lnc-BUB1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BUB1B-1:1	chr15	 40528645	 40529546	+	lnc-BUB1B-1	lnc-BUB1B-1:1	ENSG00000260648.1	RP11-133K1.7	PAK6	NA	chr15:40515645-40538308	inner
CUST_51898_PI429285431	5.068203	P	5.3807106	P	0.805240924019835	0	lncRNA	55443-2_{3001..5683}	hg19_lincRNAsTranscripts_TCONS_l2_00012719 range=chr19:56118128-56130307 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012719 range=chr19:56118128-56130307 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 56121128	 56123810	+	NA	NA	NA	NA	ZNF784	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-63.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-58.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60chr19:56132107-56135941"	NA	inner
CUST_2413_PI429285431	1.3519707	A	1.4828918	A	0.91324819356218	0	lncRNA	2405-1_{1..559}	"transcript_id ""ENST00000523311.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523311.1"" | genecode_v17"	chr5	159175240	159175798	-	ENSG00000254199.1	ENST00000523311.1	AC008691.1	AC008691.1-001	NA	NA	NA	inter
CUST_39595_PI429285431	2.2154431	A	0.9301592	A	2.4373001030068	0	lncRNA	40538-1_{1..1179}	n387602|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jir.1||0.3801010|-0.3193379	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387602|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jir.1||0.3801010|-0.3193379	chr6	  2769771	  2770949	+	NA	NA	NA	NA	WRNIP1	NA	chr6:2765666-2780950	inner
CUST_8644_PI429285431	2.322739	A	2.116265	A	1.15386464705388	0	lncRNA	10197-1_{1..343}	lnc-CCDC140-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC140-1:6	chr2	223186074	223186416	+	lnc-CCDC140-1	lnc-CCDC140-1:6	ENSG00000237732	AC010980.2	NA	NA	NA	inter
CUST_378_PI429201921	1.5299501	A	0.8986903	A	1.54891695899779	0	lncRNA	243-2_{3001..6000}	TC02003291.hg.1	TCONS_l2_00015360-XLOC_l2_007356 // Broad TUCP // linc-MEIS1-1 chr2:+:66610437-66619582 // chr2 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr2:+:66610437-66619582	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00015360-XLOC_l2_007356	linc-MEIS1-1	chr2	 66610437	 66619582	+	NA	NA	NA	NA	FGGY	NA	chr1:59762625-59765312	Unknown
CUST_45649_PI429285431	1.5517625	A	0.9061425	A	1.56441144959435	0	lncRNA	50026-1_{1..2270}	"gi|392996946|ref|NR_070308.1| Homo sapiens DPY30 domain containing 2 (DYDC2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392996946|ref|NR_070308.1| Homo sapiens DPY30 domain containing 2 (DYDC2), transcript variant 4, non-coding RNA"	Chr10	 82104501	 82106770	+	84332	NR_070308.1	NA	NA	NA	"hg19_refFlat_DYDC1:range=chr10:82095912-821123575'pad=0,hg19_refFlat_DYDC1:range=chr10:82095912-821123575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00"	NA	inter
CUST_40884_PI429285431	8.235932	P	7.0774474	P	2.2322283222722	0	lncRNA	41576-1_{1..2110}	n410690|NR_037940|lncRNA|Homosapiens||RefGeneNoncode|NR_037940||1.2575500|-0.3206291	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410690|NR_037940|lncRNA|Homosapiens||RefGeneNoncode|NR_037940||1.2575500|-0.3206291	chr7	 27202056	 27204165	-	NA	NA	NA	NA	HOXA10	NA	chr7:27210210-27219880	inner
CUST_14281_PI429285431	0.9231797	A	0.91480815	A	1.0058195846492	0	lncRNA	15940-1_{1..454}	lnc-DCC-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCC-2:1	chr18	 49691541	 49691994	+	lnc-DCC-2	lnc-DCC-2:1	XLOC_012677	linc-DCC-1	NA	NA	NA	inter
CUST_17891_PI429285431	1.0572824	A	0.91375124	A	1.10460545716998	0	lncRNA	19624-2_{3001..3562}	lnc-AL137145.1-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AL137145.1-2:8	chr10	  6630760	  6631321	+	lnc-AL137145.1-2	lnc-AL137145.1-2:8	XLOC_008370	linc-ITIH2-10	NA	NA	NA	inter
CUST_35679_PI429285431	0.90942454	A	0.9019435	A	1.00519892955943	0	lncRNA	37099-1_{1..2149}	n342840|AK097475|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5343|NULL|-1.2850100|-0.3202828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n342840|AK097475|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5343|NULL|-1.2850100|-0.3202828	chr8	 47752507	 47754655	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45150_PI429285431	6.320307	P	4.7400875	P	2.99015340196288	0	lncRNA	49629-2_{3001..3968}	"gi|194473993|ref|NR_024040.1| Homo sapiens chondroitin sulfate N-acetylgalactosaminyltransferase 1 (CSGALNACT1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|194473993|ref|NR_024040.1| Homo sapiens chondroitin sulfate N-acetylgalactosaminyltransferase 1 (CSGALNACT1), transcript variant 3, non-coding RNA"	Chr8	 19264672	 19265639	-	55790	NR_024040.1	NA	NA	NA	NA	NA	inter
CUST_32406_PI429285431	1.5919276	A	1.7064303	A	0.923700657408674	0	lncRNA	34082-1_{1..2387}	n338999|AK123487|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1428|NULL|-1.0011300|-0.3249996	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n338999|AK123487|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1428|NULL|-1.0011300|-0.3249996	chr2	166790366	166792752	+	NA	NA	NA	NA	TTC21B	"hg19_refFlat_TTC21B:range=chr2:166731265-1668102155'pad=0,hg19_refFlat_TTC21B:range=chr2:166731265-1668102155'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr2:166780366-166810348"	NA	inner
CUST_42313_PI429285431	9.522385	P	9.442195	P	1.05715725685261	0	lncRNA	44942-1_{1..135}	ENST00000384436 ncrna:snoRNA chromosome:GRCh37:X:153628622:153628756:1 gene:ENSG00000207165 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384436 ncrna:snoRNA chromosome:GRCh37:X:153628622:153628756:1 gene:ENSG00000207165 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	153628622	153628756	+	ENSG00000207165	ENST00000384436	NA	NA	DNASE1L1	NA	chrX:153629579-153638756	inter
CUST_43794_PI429285431	1.3296523	A	0.9191544	A	1.32914444659893	0	lncRNA	48525-1_{1..3000}	"gi|386869314|ref|NR_048552.1| Homo sapiens nucleolar protein 10 (NOL10), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386869314|ref|NR_048552.1| Homo sapiens nucleolar protein 10 (NOL10), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_048552.1	NA	NA	NA	NA	NA	Unknown
CUST_18269_PI429285431	2.3890166	A	2.657323	A	0.830293667349267	0	lncRNA	20003-1_{1..668}	lnc-C2orf42-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-2:1	chr2	 70330322	 70330989	-	lnc-C2orf42-2	lnc-C2orf42-2:1	ENSG00000226505	AC016700.3	NA	"hg19_refFlat_MRPL36:range=chr5:1798738-17990495'pad=0,hg19_refFlat_MRPL36:range=chr5:1798738-17990495'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20"	NA	inter
LNCA_21_P0001375	5.4276915	P	5.2036505	P	1.16800058759034	0	lncRNA	TCONS_00001146	NA	NA	NA	NA	XLOC_000403	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000403), lincRNA [TCONS_00001146]"	chr1:150509740-150509799	hs|1q21.3	Agilent_HUMAN_G3V2	TCONS_00001146	TCONS_00001146	chr1	150509740	150509799	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34214_PI429285431	0.9026485	A	0.90112454	A	1.00105688668882	0	lncRNA	35727-1_{1..3000}	n341074|AL834516|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3540|NULL|-0.3471800|-0.2675986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341074|AL834516|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3540|NULL|-0.3471800|-0.2675986	chr11	 77184415	 77187414	+	NA	NA	NA	NA	CLNS1A	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10chr11:77327196-77348851"	NA	inner
CUST_27788_PI429285431	0.92306334	A	0.9207935	A	1.00157457153435	0	lncRNA	29374-1_{1..3000}	n325015|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316666|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316666|-1.0409100|-0.3891601	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325015|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316666|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316666|-1.0409100|-0.3891601	chr20	 25884447	 25887446	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31768_PI429285431	0.9510107	A	0.92799145	A	1.01608370059263	0	lncRNA	33509-1_{1..1495}	n338310|CR589979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|704|NULL|-1.0989200|-0.1741872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338310|CR589979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|704|NULL|-1.0989200|-0.1741872	chr14	 55369023	 55370517	+	NA	NA	NA	NA	GCH1	"hg19_refFlat_GCH1:range=chr14:55310735-553693815'pad=0,hg19_refFlat_GCH1:range=chr14:55310735-553693815'pad=0 3'pad=0 strand=- repeatMasking=none,-109.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_GCH1:range=chr14:55309757-553693815'pad=0,hg19_refFlat_GCH1:range=chr14:55309757-553693815'pad=0 3'pad=0 strand=- repeatMasking=none,-109.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_GCH1:range=chr14:55310512-553693815'pad=0,hg19_refFlat_GCH1:range=chr14:55310512-553693815'pad=0 3'pad=0 strand=- repeatMasking=none,-109.80chr14:55359023-55369542"	NA	inner
CUST_47323_PI429285431	4.3413157	P	3.7529485	P	1.50354411689678	0	lncRNA	51381-1_{1..3000}	"gi|325652077|ref|NR_037941.1| Homo sapiens syntaxin 16 (STX16), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|325652077|ref|NR_037941.1| Homo sapiens syntaxin 16 (STX16), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NR_037941.1	NA	NA	NA	"hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20"	NA	Unknown
CUST_38883_PI429285431	1.122365	A	0.9212363	A	1.14959739679354	0	lncRNA	39870-1_{1..356}	n384818|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003myl.1||-0.6350430|-0.2695874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384818|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003myl.1||-0.6350430|-0.2695874	chr6	  9842164	  9842519	-	NA	NA	NA	NA	OFCC1	NA	chr6:9832164-9874348	inter
CUST_16312_PI429285431	6.135533	P	7.5062337	P	0.386703385485284	0	lncRNA	18018-1_{1..547}	lnc-FAM75A4-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM75A4-2:3	chr9	 41954504	 41955050	-	lnc-FAM75A4-2	lnc-FAM75A4-2:3	XLOC_007690	linc-FAM75A7-3	NA	NA	NA	inter
CUST_28496_PI429285431	4.122688	P	4.4576426	P	0.792809085033277	0	lncRNA	30164-1_{1..946}	n325839|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051177|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051177|1.5341400|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325839|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051177|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051177|1.5341400|-1.0000000	chr10	135130467	135131412	+	NA	NA	NA	NA	TUBGCP2	NA	chr10:135120467-135122644	inter
CUST_34395_PI429285431	1.130928	A	0.89877963	A	1.17458276173308	0	lncRNA	35878-2_{3001..4125}	n341265|BX647900|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3733|NULL|-0.9284320|-0.4067304	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341265|BX647900|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3733|NULL|-0.9284320|-0.4067304	chr7	 84164791	 84165915	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11933_PI429285431	8.638453	P	8.309384	P	1.25620246029716	0	lncRNA	13513-1_{1..1120}	lnc-FMOD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FMOD-1:1	chr1	203398206	203399325	-	lnc-FMOD-1	lnc-FMOD-1:1	XLOC_001160	linc-FMOD-3	NA	NA	NA	inter
CUST_29151_PI429285431	0.9183463	A	1.1007619	A	0.881226264754623	0	lncRNA	30894-1_{1..2519}	n326661|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000010417|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000010417|-0.9519440|-0.2509661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326661|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000010417|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000010417|-0.9519440|-0.2509661	chr1	 30259385	 30261903	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46770_PI429285431	4.3236084	P	4.16642	P	1.1151118304793	0	lncRNA	50920-1_{1..2572}	"gi|341915788|ref|XR_132626.1| PREDICTED: Homo sapiens uncharacterized LOC100507131 (LOC100507131), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915788|ref|XR_132626.1| PREDICTED: Homo sapiens uncharacterized LOC100507131 (LOC100507131), misc_RNA"	Chr17	 17761541	 17764112	-	100507131	XR_132626.2	NA	NA	NA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.21;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20"	NA	inter
CUST_1244_PI429285431	0.9270676	A	0.92444724	A	1.00181794560917	0	lncRNA	1236-1_{1..585}	"transcript_id ""ENST00000564299.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564299.1"" | genecode_v17"	chr2	217860629	217861213	+	ENSG00000259855.1	ENST00000564299.1	RP11-574O16.1	RP11-574O16.1-001	NA	NA	NA	inter
LNCA_21_P0008543	1.1367881	A	0.9252792	A	1.15789858511914	0	lncRNA	TCONS_00023132	NA	NA	NA	NA	XLOC_011074	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011074), lincRNA [TCONS_00023132]"	chr14:74675218-74675159	hs|14q24.3	Agilent_HUMAN_G3V2	TCONS_00023132	TCONS_00023132	chr14	 74675159	 74675218	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12969_PI429285431	3.4500008	P	3.3791487	P	1.05033686166597	0	lncRNA	14595-1_{1..311}	lnc-CALB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CALB2-1:1	chr16	 71360710	 71361020	+	lnc-CALB2-1	lnc-CALB2-1:1	XLOC_011774	linc-CALB2-1	NA	NA	NA	inter
LNCA_21_P0014592	1.0562166	A	0.92673475	A	1.09390075163818	0	lncRNA	XR_110434	XR_110434	XR_110434	NA	NA	LOC100507575	uncharacterized LOC100507575	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507575 (LOC100507575), miscRNA [XR_110434]"	chr10:91094607-91094548	hs|10q23.31	Agilent_HUMAN_G3V2	XR_110434	XR_110434	chr10	 91094548	 91094607	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49716_PI429285431	1.0584507	A	2.2196782	A	0.447131936656839	0	lncRNA	53492-1_{1..1118}	hg19_lincRNAsTranscripts_TCONS_l2_00026433 range=chr7:25694851-25702679 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026433 range=chr7:25694851-25702679 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 25694851	 25695968	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19339_PI429285431	1.4492433	A	1.4214917	A	1.0194221460656	0	lncRNA	21005-1_{1..553}	lnc-INO80D-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-INO80D-2:1	chr2	206628514	206629066	-	lnc-INO80D-2	lnc-INO80D-2:1	ENSG00000225216.1	AC007362.3	NRP2	"hg19_refFlat_NRP2:range=chr2:206548015-2066597825'pad=0,hg19_refFlat_NRP2:range=chr2:206548015-2066597825'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.30;hg19_refFlat_NRP2:range=chr2:206548015-2066412505'pad=0,hg19_refFlat_NRP2:range=chr2:206548015-2066412505'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.30chr2:206618514-206638730"	NA	inner
CUST_6145_PI429285431	0.90406394	A	1.286663	A	0.767054472656637	0	lncRNA	6071-1_{1..264}	"transcript_id ""ENST00000578349.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578349.1"" | genecode_v17"	chr18	 30161491	 30161754	+	ENSG00000263688.1	ENST00000578349.1	RP11-386P4.1	RP11-386P4.1-001	NA	NA	NA	inter
LNCA_21_P0013056	0.9307514	A	0.9295638	A	1.00082352049859	0	lncRNA	THC2730466	NA	NA	NA	NA	XLOC_l2_012847	NA	NA	THC2730466	NA	"BROAD Institute lincRNA (XLOC_l2_012847), lincRNA [TCONS_l2_00024570]"	chr6:002852227-002852168	hs|6p25.2	Agilent_HUMAN_G3V2	THC2730466	THC2730466	chr6	  2852168	  2852227	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23011_PI429285431	6.4575396	P	6.7079635	P	0.840649375084034	0	lncRNA	24583-1_{1..544}	lnc-YSK4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YSK4-1:3	chr2	135676133	135676676	-	lnc-YSK4-1	lnc-YSK4-1:3	ENSG00000224043.3	AC016725.4	CCNT2	"hg19_refFlat_ACMSD:range=chr2:135596253-1356594305'pad=0,hg19_refFlat_ACMSD:range=chr2:135596253-1356594305'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40chr2:135676392-135686240"	NA	inter
CUST_37205_PI429285431	3.7471836	P	3.7200136	P	1.01901126475594	0	lncRNA	38317-1_{1..1047}	n345639|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1188|NULL|-1.2886600|-0.4281916	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345639|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1188|NULL|-1.2886600|-0.4281916	chr4	 74569814	 74570860	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12361_PI429285431	0.92979634	A	0.92354316	A	1.00434378107212	0	lncRNA	13973-1_{1..883}	lnc-ZIC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZIC1-1:1	chr3	147227382	147228264	+	lnc-ZIC1-1	lnc-ZIC1-1:1	XLOC_002857	linc-AGTR1-6	NA	NA	NA	inter
CUST_45337_PI429285431	5.665586	P	5.895557	P	0.852652030982883	0	lncRNA	49776-1_{1..3000}	"gi|305632840|ref|NR_036592.1| Homo sapiens endogenous Bornavirus-like nucleoprotein 2 pseudogene (LOC100506710), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|305632840|ref|NR_036592.1| Homo sapiens endogenous Bornavirus-like nucleoprotein 2 pseudogene (LOC100506710), non-coding RNA"	Chr9	 37079893	 37082892	+	100506710	NR_036592.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0006099	0.9640829	A	0.95998734	A	1.00284285914866	0	lncRNA	ENST00000446206	NA	NA	NA	NA	XLOC_007819	NA	ENST00000446206	THC2744020	NA	"BROAD Institute lincRNA (XLOC_007819), lincRNA [TCONS_00015864]"	chr9:109377421-109377362	hs|9q31.2	Agilent_HUMAN_G3V2	ENST00000446206	ENST00000446206	chr9	109377362	109377421	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12708_PI429285431	0.9644237	A	0.92962766	A	1.02441198726848	0	lncRNA	14326-1_{1..3000}	lnc-PROP1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PROP1-2:2	chr5	177389454	177392453	-	lnc-PROP1-2	lnc-PROP1-2:2	XLOC_005099	linc-FAM153A-2	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40"	NA	inter
CUST_4231_PI429285431	1.469348	A	0.996024	A	1.38830446899034	0	lncRNA	4190-1_{1..565}	"transcript_id ""ENST00000546982.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546982.1"" | genecode_v17"	chr12	 43040385	 43040949	+	ENSG00000257164.1	ENST00000546982.1	RP11-25I15.2	RP11-25I15.2-001	NA	NA	NA	inter
CUST_48865_PI429285431	1.2155155	A	0.909194	A	1.23655079162913	0	lncRNA	52701-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00019181 range=chr3:14390737-14398336 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019181 range=chr3:14390737-14398336 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 14393737	 14396736	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.33;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10"	NA	inter
CUST_35631_PI429285431	7.9043007	P	7.4570665	P	1.36342392083575	0	lncRNA	37046-1_{1..2002}	n342775|AK130709|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5278|NULL|1.7061000|-0.1221078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342775|AK130709|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5278|NULL|1.7061000|-0.1221078	chr11	 71498559	 71500560	+	NA	NA	NA	NA	FAM86C1	"hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40chr11:71488559-71512280"	NA	inter
CUST_30781_PI429285431	0.92021334	A	0.91774493	A	1.00171243597873	0	lncRNA	32568-1_{1..450}	n336634|Z47223|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327318|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327318|2.9211800|-0.0363827	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336634|Z47223|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327318|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327318|2.9211800|-0.0363827	chr14	106329408	106329857	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51864_PI429285431	2.2953448	A	3.1704557	A	0.545211954266663	0	lncRNA	55416-1_{1..2214}	hg19_lincRNAsTranscripts_TCONS_l2_00012649 range=chr19:52197006-52209106 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012649 range=chr19:52197006-52209106 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 52197006	 52199219	+	NA	NA	NA	NA	HAS1	NA	chr19:52216365-52219106	inter
CUST_22093_PI429285431	0.94809043	A	0.9266144	A	1.01499739871096	0	lncRNA	23698-1_{1..436}	lnc-C5orf47-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C5orf47-1:1	chr5	173608605	173609040	+	lnc-C5orf47-1	lnc-C5orf47-1:1	ENSG00000254011.1	CTC-229L21.1	NA	NA	NA	inter
CUST_37783_PI429285431	5.4102006	P	5.742163	P	0.794455105180583	0	lncRNA	38882-1_{1..3000}	n346296|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1846|NULL|-1.2991100|-0.3277946	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n346296|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1846|NULL|-1.2991100|-0.3277946	chr5	 90597137	 90600136	-	NA	NA	NA	NA	NA	"hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.61;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_956_PI429285431	1.4964018	A	2.1813943	A	0.622009060219527	0	lncRNA	946-1_{1..555}	"transcript_id ""ENST00000422600.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422600.1"" | genecode_v17"	chr2	 98069548	 98070102	-	ENSG00000237837.1	ENST00000422600.1	AC159540.3	AC159540.3-001	NA	NA	NA	inter
CUST_43275_PI429285431	1.102702	A	0.91778976	A	1.13674782208462	0	lncRNA	48094-1_{1..3000}	ENST00000568093 havana:sense_intronic chromosome:GRCh37:15:40524283:40528308:1 gene:ENSG00000260648 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000568093 havana:sense_intronic chromosome:GRCh37:15:40524283:40528308:1 gene:ENSG00000260648 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr15	 40524283	 40527282	+	ENSG00000260648	ENST00000568093	NA	NA	PAK6	NA	chr15:40514283-40538308	inner
LNCA_21_P0013730	2.181295	A	2.5195718	A	0.790985525659536	0	lncRNA	AK310876	NA	AK310876	NA	Hs.708686	XLOC_l2_015220	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015220), lincRNA [TCONS_l2_00029980]"	chr9:42782524-42782583	hs|9p12	Agilent_HUMAN_G3V2	AK310876	AK310876	chr9	 42782524	 42782583	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45972_PI429285431	7.8922286	P	7.4747167	P	1.33562212739954	0	lncRNA	50264-1_{1..2143}	"gi|209954785|ref|NR_024254.1| Homo sapiens family with sequence similarity 86, member F, pseudogene (FAM86FP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209954785|ref|NR_024254.1| Homo sapiens family with sequence similarity 86, member F, pseudogene (FAM86FP), non-coding RNA"	Chr12	  8383645	  8385787	-	653113	NR_024254.1	NA	NA	NA	"hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40"	NA	inter
CUST_36233_PI429285431	6.726452	P	7.5057325	P	0.582657303285318	0	lncRNA	37482-1_{1..872}	n344773|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_322|NULL|-1.3378300|-0.2135553	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n344773|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_322|NULL|-1.3378300|-0.2135553	chr12	111374389	111375260	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30"	NA	inter
CUST_26911_PI429285431	1.6158061	A	2.275673	A	0.632936687694738	0	lncRNA	28429-1_{1..1525}	n323987|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053790|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053790|-1.0295900|-0.2943290	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323987|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053790|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053790|-1.0295900|-0.2943290	chr9	116921638	116923162	-	NA	NA	NA	NA	COL27A1	"hg19_refFlat_COL27A1:range=chr9:116918231-1170729755'pad=0,hg19_refFlat_COL27A1:range=chr9:116918231-1170729755'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.90chr9:116918231-116950509"	NA	inner
CUST_9018_PI429285431	1.0295781	A	0.96292263	A	1.04728599486748	0	lncRNA	10545-1_{1..646}	lnc-PCM1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PCM1-3:5	chr8	 17945509	 17946154	+	lnc-PCM1-3	lnc-PCM1-3:5	ENSG00000245281	CTD-2547L16.1	ASAH1	NA	chr8:17935509-17942507	inter
CUST_31587_PI429285431	1.1352257	A	1.083535	A	1.03647886605558	0	lncRNA	33344-1_{1..2652}	n338092|AK056715|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|479|NULL|-0.7262740|-0.2451332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338092|AK056715|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|479|NULL|-0.7262740|-0.2451332	chr15	 85648923	 85651574	+	NA	NA	NA	NA	PDE8A	NA	chr15:85638923-85661385	inner
CUST_17544_PI429285431	1.2676964	A	5.852966	P	0.0416577982356193	0	lncRNA	19270-1_{1..491}	lnc-KLHL28-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL28-3:3	chr14	 45237198	 45237688	-	lnc-KLHL28-3	lnc-KLHL28-3:3	XLOC_011008	linc-FSCB	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40"	NA	inter
CUST_17046_PI429285431	5.3880734	P	5.605344	P	0.860191273163815	0	lncRNA	18756-1_{1..936}	lnc-CDK20-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK20-5:1	chr9	 90893204	 90894139	-	lnc-CDK20-5	lnc-CDK20-5:1	XLOC_007765	linc-FAM75C2-2	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70"	NA	inter
CUST_38344_PI429285431	0.9667288	A	0.98111117	A	0.990080427538636	0	lncRNA	39390-1_{1..2017}	n382077|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vjh.1||0.4582100|-0.2913917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382077|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vjh.1||0.4582100|-0.2913917	chr13	 74611059	 74613075	-	NA	NA	NA	NA	KLF12	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70chr13:74601059-74623076"	NA	inner
CUST_38832_PI429285431	5.9526124	P	6.0283146	P	0.948880162039238	0	lncRNA	39825-1_{1..407}	n384632|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jmu.2||-1.0743400|-0.2548613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384632|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jmu.2||-1.0743400|-0.2548613	chr5	 42424578	 42424984	+	NA	NA	NA	NA	GHR	NA	chr5:42423877-42524466	inner
CUST_14298_PI429285431	1.1148785	A	1.2082119	A	0.937354453245006	0	lncRNA	15958-1_{1..1319}	lnc-WDR60-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR60-4:5	chr7	158813176	158814494	+	lnc-WDR60-4	lnc-WDR60-4:5	XLOC_006322	TCONS_00013661	VIPR2	NA	chr7:158820866-158823556	inter
LNCA_21_P0011398	1.0191605	A	1.0537655	A	0.976299028159475	0	lncRNA	BC035099	NA	BC035099	NA	NA	WHAMMP2	"WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 2"	NA	THC2511826	NA	"BROAD Institute lincRNA (XLOC_l2_004595), lincRNA [TCONS_l2_00009414]"	chr15:28993177-28993236	hs|15q13.1	Agilent_HUMAN_G3V2	BC035099	BC035099	chr15	 28993177	 28993236	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35372_PI429285431	11.156216	P	10.742767	P	1.3318660562025	0	lncRNA	36779-1_{1..1381}	n342418|AF090097|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4911|NULL|-0.9474650|-0.3226499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342418|AF090097|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4911|NULL|-0.9474650|-0.3226499	chr2	 69376634	 69378014	-	NA	NA	NA	NA	ANTXR1	NA	chr2:69366634-69387995	inner
CUST_7708_PI429285431	5.6646867	P	5.789028	P	0.917422820881219	0	lncRNA	9341-1_{1..1698}	lnc-ONECUT3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ONECUT3-1:1	chr19	  1824108	  1825805	+	lnc-ONECUT3-1	lnc-ONECUT3-1:1	ENSG00000247727	ENST00000502061	REXO1	"hg19_refFlat_REXO1:range=chr19:1816065-18483575'pad=0,hg19_refFlat_REXO1:range=chr19:1816065-18483575'pad=0 3'pad=0 strand=- repeatMasking=none,-100.20chr19:1815245-1834542"	NA	inner
LNCA_21_P0006792	0.98752296	A	1.6307065	A	0.640298466562615	0	lncRNA	ENST00000421597	NA	NA	NA	NA	XLOC_008950	NA	ENST00000421597	NA	NA	"BROAD Institute lincRNA (XLOC_008950), lincRNA [TCONS_00018049]"	chr10:113109791-113109732	hs|10q25.2	Agilent_HUMAN_G3V2	ENST00000421597	ENST00000421597	chr10	113109732	113109791	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001538	4.7099524	P	5.364112	P	0.635445543781326	0	lncRNA	TCONS_00001570	NA	NA	NA	NA	XLOC_000909	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000909), lincRNA [TCONS_00001570]"	chr1:90076657-90076598	hs|1p22.2	Agilent_HUMAN_G3V2	TCONS_00001570	TCONS_00001570	chr1	 90076598	 90076657	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25067_PI429285431	8.356051	P	8.433619	P	0.947653793173974	0	lncRNA	26605-1_{1..358}	lnc-ZDHHC6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZDHHC6-3:1	chr10	114437394	114437751	-	lnc-ZDHHC6-3	lnc-ZDHHC6-3:1	ENSG00000233340.1	RP11-25C19.3	VTI1A	NA	chr10:114427394-114447578	inner
CUST_30117_PI429285431	0.97092885	A	0.9273137	A	1.03069333674351	0	lncRNA	31890-1_{1..418}	n334680|AJ002512|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243959|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243959|2.4319700|-0.2764610	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334680|AJ002512|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243959|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243959|2.4319700|-0.2764610	chr15	 33876581	 33876998	+	NA	NA	NA	NA	RYR3	NA	chr15:33866581-33905381	inner
CUST_4158_PI429285431	0.9272264	A	0.92359614	A	1.00251947303495	0	lncRNA	4116-1_{1..562}	"transcript_id ""ENST00000542819.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000542819.1"" | genecode_v17"	chr12	  8700957	  8701518	-	ENSG00000255801.1	ENST00000542819.1	RP11-561P12.5	RP11-561P12.5-001	CLEC4E	NA	chr12:8690957-8693558	inter
CUST_15593_PI429285431	3.6971655	P	3.7865992	P	0.939891611762503	0	lncRNA	17280-1_{1..915}	lnc-VRK2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VRK2-3:1	chr2	 57940102	 57941016	+	lnc-VRK2-3	lnc-VRK2-3:1	XLOC_001483	linc-VRK2-2	NA	NA	NA	inter
CUST_50660_PI429285431	1.1015142	A	1.112545	A	0.99238318813731	0	lncRNA	54336-1_{1..530}	hg19_lincRNAsTranscripts_TCONS_l2_00003489 range=chr10:38939440-38977996 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003489 range=chr10:38939440-38977996 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 38939440	 38939969	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27093_PI429285431	8.566633	P	8.605638	P	0.973326000861526	0	lncRNA	28626-1_{1..575}	n324204|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328336|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328336|-1.2057000|-0.3597458	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324204|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328336|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328336|-1.2057000|-0.3597458	chr7	 31420783	 31421357	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21668_PI429285431	3.1426318	A	3.3476615	P	0.867520827775647	0	lncRNA	23278-1_{1..141}	lnc-SLC39A11-1:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC39A11-1:17	chr17	 70424377	 70424517	-	lnc-SLC39A11-1	lnc-SLC39A11-1:17	ENSG00000227036.2	LINC00511	NA	NA	NA	inter
CUST_32402_PI429285431	1.6356918	A	0.901394	A	1.66358755777376	0	lncRNA	34078-1_{1..1583}	n338995|AL080107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1424|NULL|-1.1342000|-0.3865681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338995|AL080107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1424|NULL|-1.1342000|-0.3865681	chr2	163163604	163165186	-	NA	NA	NA	NA	IFIH1	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70chr2:163153604-163174969"	NA	inner
LNCA_21_P0011358	2.677858	A	2.6642733	A	1.00946066835769	0	lncRNA	TCONS_l2_00008962	NA	NA	NA	NA	XLOC_l2_004854	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004854), lincRNA [TCONS_l2_00008962]"	chr15:28965121-28965062	hs|15q13.1	Agilent_HUMAN_G3V2	TCONS_l2_00008962	TCONS_l2_00008962	chr15	 28965062	 28965121	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006309	8.171257	P	8.299821	P	0.914741493743911	0	lncRNA	TCONS_00016459	NA	NA	NA	NA	XLOC_007824	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007824), lincRNA [TCONS_00016459]"	chr9:110477317-110477258	hs|9q31.2	Agilent_HUMAN_G3V2	TCONS_00016459	TCONS_00016459	chr9	110477258	110477317	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49810_PI429285431	0.9058962	A	0.90285736	A	1.00210858331991	0	lncRNA	53565-2_{3001..3120}	hg19_lincRNAsTranscripts_TCONS_l2_00025928 range=chr7:63466642-63478469 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025928 range=chr7:63466642-63478469 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 63469642	 63469761	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80"	NA	inter
CUST_6478_PI429285431	2.7710125	A	3.014085	A	0.844943922234529	0	lncRNA	6419-1_{1..643}	"transcript_id ""ENST00000441942.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441942.2"" | genecode_v17"	chr19	 35890450	 35891092	+	ENSG00000205786.4	ENST00000441942.2	AC002511.1	AC002511.1-001	NA	NA	NA	inter
CUST_9940_PI429285431	1.409564	A	1.6044185	A	0.873661002732353	0	lncRNA	11463-1_{1..370}	lnc-STARD6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STARD6-1:1	chr18	 51884162	 51884531	-	lnc-STARD6-1	lnc-STARD6-1:1	XLOC_012845	linc-STARD6-1	C18orf54	NA	chr18:51885171-51894231	inter
CUST_5507_PI429285431	7.561035	P	7.8982854	P	0.79154846958676	0	lncRNA	5438-1_{1..1452}	"transcript_id ""ENST00000539813.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000539813.1"" | genecode_v17"	chr16	 33961052	 33962503	-	ENSG00000256642.1	ENST00000539813.1	LINC00273	LINC00273-001	NA	NA	NA	inter
CUST_18975_PI429285431	4.2660666	P	4.5530214	A	0.819630286459135	0	lncRNA	20667-1_{1..2005}	lnc-ZNF131-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF131-1:4	chr5	 43044801	 43046805	+	lnc-ZNF131-1	lnc-ZNF131-1:4	ENSG00000215068	AC025171.1	C5orf39	NA	chr5:43039182-43040447	inter
CUST_33363_PI429285431	2.5140185	A	3.2191253	P	0.613397078314266	0	lncRNA	34943-1_{1..595}	n340081|AF085912|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2536|NULL|-0.9695670|-0.1748077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340081|AF085912|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2536|NULL|-0.9695670|-0.1748077	chr10	 78029963	 78030557	+	NA	NA	NA	NA	C10orf11	NA	chr10:78019963-78040558	inner
CUST_37847_PI429285431	3.2433133	A	2.3632498	A	1.84045630686787	0	lncRNA	38938-1_{1..334}	n346375|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1925|NULL|-1.3082700|-0.0646187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346375|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1925|NULL|-1.3082700|-0.0646187	chr16	 15226670	 15227003	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15631_PI429285431	0.9251813	A	0.9173422	A	1.00544843911367	0	lncRNA	17319-1_{1..327}	lnc-RAB11FIP5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB11FIP5-1:1	chr2	 73385927	 73386253	-	lnc-RAB11FIP5-1	lnc-RAB11FIP5-1:1	XLOC_002160	linc-RAB11FIP5	NA	NA	NA	inter
CUST_32486_PI429285431	2.7283804	A	3.7861757	P	0.480365584882809	0	lncRNA	34155-1_{1..1042}	n339091|AB053312|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1521|NULL|-0.7978670|-0.2623195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339091|AB053312|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1521|NULL|-0.7978670|-0.2623195	chr2	202005011	202006052	-	NA	NA	NA	NA	CFLAR	"hg19_refFlat_CFLAR:range=chr2:201994589-2020286965'pad=0,hg19_refFlat_CFLAR:range=chr2:201994589-2020286965'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CFLAR:range=chr2:201997759-2020286965'pad=0,hg19_refFlat_CFLAR:range=chr2:201997759-2020286965'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CFLAR:range=chr2:201994589-2020061565'pad=0,hg19_refFlat_CFLAR:range=chr2:201994589-2020061565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CFLAR:range=chr2:201997759-2020278035'pad=0,hg19_refFlat_CFLAR:range=chr2:201997759-2020278035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90chr2:201995011-202032515"	NA	inner
CUST_3242_PI429285431	0.92832035	A	0.9269289	A	1.00096494490445	0	lncRNA	3221-1_{1..464}	"transcript_id ""ENST00000420417.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420417.3"" | genecode_v17"	chr8	 99973656	 99974119	+	ENSG00000229625.3	ENST00000420417.3	RP11-44N12.2	RP11-44N12.2-001	OSR2	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90chr8:99963656-99964328"	NA	inter
CUST_45422_PI429285431	3.1899934	A	2.4304056	A	1.69300683771361	0	lncRNA	49845-1_{1..3000}	"gi|224493716|ref|NR_027126.1| Homo sapiens RNA binding motif protein 18 (RBM18), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|224493716|ref|NR_027126.1| Homo sapiens RNA binding motif protein 18 (RBM18), transcript variant 3, non-coding RNA"	Chr9	125001834	125004833	-	92400	NR_027126.1	NA	NA	NA	NA	NA	inter
CUST_36940_PI429285431	5.973697	P	6.061669	P	0.940844367357968	0	lncRNA	38094-1_{1..514}	n345410|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_959|NULL|-1.3749700|-0.2259300	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345410|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_959|NULL|-1.3749700|-0.2259300	chr22	 28134997	 28135510	+	NA	NA	NA	NA	MN1	NA	chr22:28144265-28145511	inter
CUST_4268_PI429285431	1.5452602	A	1.6140499	A	0.953437516651389	0	lncRNA	4225-1_{1..3000}	"transcript_id ""ENST00000515617.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000515617.1"" | genecode_v17"	chr12	 54452038	 54455037	+	ENSG00000248265.1	ENST00000515617.1	RP11-834C11.3	RP11-834C11.3-001	HOXC4	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50chr12:54442038-54449814"	NA	inter
CUST_269_PI429201921	0.980169	A	0.92274654	A	1.04060493909033	0	lncRNA	195-1_{1..3000}	TC07002872.hg.1	 TCONS_l2_00026501-XLOC_l2_013772 // Broad TUCP // linc-NEUROD6-1 chr7:-:31455009-31456489 // chr7 // 100 // 100 // 0 // --- // 0///TCONS_l2_00027313-XLOC_l2_013772 // Broad TUCP // linc-NEUROD6-1 chr7:-:31454258-31460900 // chr7 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr7:-:31454258-31460900	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00027313-XLOC_l2_013772	linc-NEUROD6-1	chr7	 31454258	 31460900	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18884_PI429285431	1.3062154	A	1.6821873	A	0.770586117253847	0	lncRNA	20578-1_{1..573}	lnc-COLEC10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COLEC10-1:1	chr8	120255657	120256229	+	lnc-COLEC10-1	lnc-COLEC10-1:1	ENSG00000147676	MAL2	MAL2	NA	chr8:120245657-120257913	inner
CUST_8901_PI429285431	0.9216734	A	1.2705824	A	0.78517764328558	0	lncRNA	10436-1_{1..2546}	lnc-FOXD4L3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXD4L3-3:1	chr9	 70984542	 70987087	+	lnc-FOXD4L3-3	lnc-FOXD4L3-3:1	ENSG00000249221	ENST00000511938	PGM5	NA	chr9:70974542-70996490	inner
CUST_46154_PI429285431	4.533734	P	4.7869377	P	0.83903116250913	0	lncRNA	50403-1_{1..2371}	"gi|301500657|ref|NR_036436.1| Homo sapiens arginine/serine-rich coiled-coil 2 (RSRC2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|301500657|ref|NR_036436.1| Homo sapiens arginine/serine-rich coiled-coil 2 (RSRC2), transcript variant 6, non-coding RNA"	Chr12	122989190	122991560	-	65117	NR_036436.1	NA	NA	NA	NA	NA	inter
CUST_49755_PI429285431	5.3787847	P	4.6193414	P	1.69283727503403	0	lncRNA	53524-1_{1..297}	hg19_lincRNAsTranscripts_TCONS_l2_00026554 range=chr7:45791219-45805389 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026554 range=chr7:45791219-45805389 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 45791219	 45791515	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2088_PI429285431	0.9117609	A	0.9106137	A	1.00079549468373	0	lncRNA	2079-1_{1..270}	"transcript_id ""ENST00000510065.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510065.1"" | genecode_v17"	chr5	 12914180	 12914449	-	ENSG00000248457.1	ENST00000510065.1	RP11-419C19.2	RP11-419C19.2-001	NA	NA	NA	inter
CUST_47042_PI429285431	8.193087	P	8.730018	P	0.68923553987485	0	lncRNA	51131-1_{1..1034}	"gi|336455152|ref|NR_038237.1| Homo sapiens RAB11B antisense RNA 1 (RAB11B-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336455152|ref|NR_038237.1| Homo sapiens RAB11B antisense RNA 1 (RAB11B-AS1), non-coding RNA"	Chr19	  8439260	  8440293	-	100507567	NR_038237.1	NA	NA	NA	"hg19_refFlat_RAB11B:range=chr19:8455301-84684425'pad=0,hg19_refFlat_RAB11B:range=chr19:8455301-84684425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20"	NA	inter
CUST_14192_PI429285431	1.1979917	A	0.9088388	A	1.22192259686111	0	lncRNA	15844-1_{1..703}	lnc-AKR1C2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AKR1C2-4:2	chr10	  4720241	  4720943	-	lnc-AKR1C2-4	lnc-AKR1C2-4:2	XLOC_008703	linc-KLF6-3	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20"	NA	inter
CUST_30784_PI429285431	8.500089	P	8.375043	P	1.09054250380816	0	lncRNA	32571-1_{1..339}	n336641|Z48605|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327430|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327430|1.9612100|-0.2916952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336641|Z48605|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327430|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327430|1.9612100|-0.2916952	chr4	106320246	106320584	-	NA	NA	NA	NA	PPA2	NA	chr4:106310246-106377592	inner
CUST_2526_PI429285431	1.0628688	A	1.2625475	A	0.870744463626402	0	lncRNA	2514-1_{1..613}	"transcript_id ""ENST00000438818.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438818.1"" | genecode_v17"	chr6	 40681150	 40681762	-	ENSG00000237947.1	ENST00000438818.1	RP11-570K4.1	RP11-570K4.1-001	NA	NA	NA	inter
CUST_48315_PI429285431	1.4942293	A	1.0404216	A	1.36965040407841	0	lncRNA	52173-1_{1..1312}	hg19_lincRNAsTranscripts_TCONS_l2_00000169 range=chr1:26551321-26554570 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000169 range=chr1:26551321-26554570 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 26551321	 26552632	+	NA	NA	NA	NA	CEP85	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00chr1:26545577-26564570"	NA	inter
CUST_30121_PI429285431	0.9481343	A	0.91814405	A	1.02100522554167	0	lncRNA	31894-1_{1..353}	n334702|AJ007994|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244191|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244191|1.8691900|-0.4209222	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334702|AJ007994|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244191|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244191|1.8691900|-0.4209222	chr6	133834110	133834462	+	NA	NA	NA	NA	EYA4	NA	chr6:133824110-133853258	inner
CUST_39562_PI429285431	3.05908	A	3.6262562	P	0.67493655581605	0	lncRNA	40506-1_{1..395}	n387514|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011gjw.1||-1.4356100|-0.0736678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387514|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011gjw.1||-1.4356100|-0.0736678	chr6	  3776251	  3776645	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14198_PI429285431	3.015055	A	3.1623473	P	0.902943549005661	0	lncRNA	15851-1_{1..2621}	lnc-TMPRSS15-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMPRSS15-9:2	chr21	 22175313	 22177933	-	lnc-TMPRSS15-9	lnc-TMPRSS15-9:2	XLOC_014019	linc-TMPRSS15-5	NA	NA	NA	inter
CUST_26558_PI429285431	1.0993198	A	1.2648011	A	0.891631011225426	0	lncRNA	28063-1_{1..452}	lnc-VGLL3-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-VGLL3-6:1	chr3	 84930640	 84931091	-	lnc-VGLL3-6	lnc-VGLL3-6:1	ENSG00000242641.1	RP11-735B13.1	NA	NA	NA	inter
CUST_28238_PI429285431	2.6950076	A	2.5369601	A	1.11577605807908	0	lncRNA	29873-1_{1..516}	n325529|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255891|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255891|-0.8938900|-0.2416551	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325529|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255891|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255891|-0.8938900|-0.2416551	chr17	 73511843	 73512358	+	NA	NA	NA	NA	LLGL2	NA	chr17:73521783-73549525	inner
CUST_2358_PI429285431	1.0562463	A	0.91473335	A	1.10306128662593	0	lncRNA	2351-1_{1..547}	"transcript_id ""ENST00000450613.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450613.2"" | genecode_v17"	chr5	125412493	125413039	-	ENSG00000248752.1	ENST00000450613.2	RP11-114J13.1	RP11-114J13.1-001	NA	NA	NA	inter
CUST_3478_PI429285431	5.8960147	P	6.501329	P	0.657328161514205	0	lncRNA	3449-1_{1..454}	"transcript_id ""ENST00000439438.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439438.1"" | genecode_v17"	chr9	 93881344	 93881797	+	ENSG00000229694.2	ENST00000439438.1	RP11-305L7.6	RP11-305L7.6-001	NA	NA	NA	inter
CUST_8878_PI429285431	1.6867409	A	1.1084394	A	1.49309038250819	0	lncRNA	10415-1_{1..576}	lnc-SNX10-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNX10-2:2	chr7	 26519488	 26520063	+	lnc-SNX10-2	lnc-SNX10-2:2	ENSG00000214870	AC004540.5	NA	NA	NA	inter
CUST_29811_PI429285431	3.1164227	A	2.5678456	A	1.46264241064719	0	lncRNA	31574-1_{1..988}	n333526|BC040029|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000095966|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000095966|3.6884400|-0.0911933	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333526|BC040029|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000095966|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000095966|3.6884400|-0.0911933	chr9	  2015342	  2016329	+	NA	NA	NA	NA	SMARCA2	NA	chr9:2015342-2057332	inner
CUST_31535_PI429285431	1.2852384	A	1.0195081	A	1.20224447814902	0	lncRNA	33294-1_{1..1999}	n338023|AK097722|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|410|NULL|-0.9847830|-0.3172468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338023|AK097722|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|410|NULL|-0.9847830|-0.3172468	chr1	 84267198	 84269196	-	NA	NA	NA	NA	TTLL7	NA	chr1:84335057-84336229	inter
CUST_29720_PI429285431	15.750822	P	15.746826	P	1.00277365561829	0	lncRNA	31482-1_{1..732}	n333391|BC006179|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086613|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086613|3.0714400|-0.1462690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333391|BC006179|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086613|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086613|3.0714400|-0.1462690	chr16	 89627329	 89628060	+	NA	NA	NA	NA	SPG7	NA	chr16:89617329-89624174	inter
CUST_11265_PI429285431	1.4016377	A	0.8948929	A	1.42084068679271	0	lncRNA	12824-1_{1..422}	lnc-THAP6-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THAP6-2:3	chr4	 76283191	 76283612	+	lnc-THAP6-2	lnc-THAP6-2:3	XLOC_003576	linc-THAP6-2	NA	NA	NA	inter
CUST_10866_PI429285431	0.926823	A	0.89720166	A	1.02074417876903	0	lncRNA	12404-1_{1..617}	lnc-TCTN3-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCTN3-1:5	chr10	 97849739	 97850355	-	lnc-TCTN3-1	lnc-TCTN3-1:5	XLOC_008914	linc-TCTN3	NA	NA	NA	inter
CUST_18827_PI429285431	1.0217972	A	0.91539615	A	1.07653934678742	0	lncRNA	20520-2_{3001..3538}	lnc-FOXL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FOXL2-1:1	chr3	138665808	138666345	-	lnc-FOXL2-1	lnc-FOXL2-1:1	ENSG00000244578	RP11-548O1.3	FOXL2	NA	chr3:138663066-138665982	inter
CUST_50616_PI429285431	0.91774493	A	0.99130064	A	0.950292988488464	0	lncRNA	54301-1_{1..594}	hg19_lincRNAsTranscripts_TCONS_l2_00004090 range=chr10:5319063-5327888 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004090 range=chr10:5319063-5327888 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	  5319063	  5319656	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22496_PI429285431	4.394178	P	4.37304	P	1.01475960806969	0	lncRNA	24083-1_{1..442}	lnc-HDLBP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HDLBP-1:1	chr2	242292454	242292895	-	lnc-HDLBP-1	lnc-HDLBP-1:1	ENSG00000223374.1	AC005104.3	FARP2	NA	chr2:242295664-242302519	inner
CUST_15592_PI429285431	0.90952796	A	0.9027716	A	1.00469413497911	0	lncRNA	17279-1_{1..2270}	lnc-CEP44-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEP44-5:1	chr4	175789957	175792226	+	lnc-CEP44-5	lnc-CEP44-5:1	XLOC_003789	linc-ADAM29-1	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80"	NA	inter
CUST_20909_PI429285431	3.7894187	P	3.880745	P	0.938659423019289	0	lncRNA	22540-1_{1..550}	lnc-CPLX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPLX1-2:1	chr4	   775560	   776109	-	lnc-CPLX1-2	lnc-CPLX1-2:1	ENSG00000249592.1	RP11-440L14.1	CPLX1	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00chr4:778745-785637"	NA	inter
CUST_23661_PI429285431	1.0581422	A	0.9081961	A	1.10952801862434	0	lncRNA	25226-1_{1..542}	lnc-LRRC57-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC57-2:1	chr15	 42861760	 42862301	-	lnc-LRRC57-2	lnc-LRRC57-2:1	ENSG00000261822.1	RP11-265N6.2	STARD9	NA	chr15:42867857-42872192	inner
CUST_9141_PI429285431	0.90300184	A	0.89800286	A	1.00347103904507	0	lncRNA	10659-1_{1..902}	lnc-SOX2-1:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SOX2-1:16	chr3	181457357	181458258	+	lnc-SOX2-1	lnc-SOX2-1:16	ENSG00000242808	RP11-4B14.2	NA	NA	NA	inter
CUST_439_PI429285431	1.7494841	A	1.7345766	A	1.0103866623433	0	lncRNA	431-1_{1..835}	"transcript_id ""ENST00000595367.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595367.1"" | genecode_v17"	chr1	147635156	147635990	+	ENSG00000232265.2	ENST00000595367.1	XXyac-YX155B6.5	XXyac-YX155B6.5-004	NA	NA	NA	inter
LNCA_21_P0007417	1.2641717	A	0.9161247	A	1.27283640095975	0	lncRNA	TCONS_00019794	NA	NA	NA	NA	XLOC_009595	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009595), lincRNA [TCONS_00019794]"	chr11:125801162-125801103	hs|11q24.2	Agilent_HUMAN_G3V2	TCONS_00019794	TCONS_00019794	chr11	125801103	125801162	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46217_PI429285431	4.522684	P	3.183643	P	2.52983097903991	0	lncRNA	50458-1_{1..2936}	"gi|188595646|ref|NR_023351.1| Homo sapiens SPRY domain containing 7 (SPRYD7), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|188595646|ref|NR_023351.1| Homo sapiens SPRY domain containing 7 (SPRYD7), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_023351.1	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60"	NA	Unknown
CUST_31671_PI429285431	5.97858	P	6.544271	P	0.675631735251722	0	lncRNA	33419-1_{1..705}	n338194|BC028281|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|586|NULL|-1.0171400|-0.2905259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n338194|BC028281|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|586|NULL|-1.0171400|-0.2905259	chr1	116941621	116942325	-	NA	NA	NA	NA	ATP1A1	"hg19_refFlat_ATP1A1:range=chr1:116926717-1169470665'pad=0,hg19_refFlat_ATP1A1:range=chr1:116926717-1169470665'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_ATP1A1:range=chr1:116916852-1169470665'pad=0,hg19_refFlat_ATP1A1:range=chr1:116916852-1169470665'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_ATP1A1:range=chr1:116916134-1169470665'pad=0,hg19_refFlat_ATP1A1:range=chr1:116916134-1169470665'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90chr1:116931621-116947396"	NA	inner
CUST_23665_PI429285431	2.4507244	A	2.895339	A	0.734780578916119	0	lncRNA	25230-1_{1..278}	lnc-PAWR-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAWR-3:2	chr12	 78934371	 78934648	-	lnc-PAWR-3	lnc-PAWR-3:2	ENSG00000257165.1	RP11-171L9.1	NA	NA	NA	inter
CUST_49797_PI429285431	10.1033535	P	10.0264845	P	1.05472654114439	0	lncRNA	53554-1_{1..446}	hg19_lincRNAsTranscripts_TCONS_l2_00025915 range=chr7:63093061-63096973 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025915 range=chr7:63093061-63096973 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 63093061	 63093506	+	NA	NA	NA	NA	LOC402269	NA	chr7:63092986-63106973	inter
CUST_33038_PI429285431	6.2318363	P	6.480228	P	0.841834359707806	0	lncRNA	34652-1_{1..2570}	n339726|AK056098|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2171|NULL|-0.8542500|-0.1915389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339726|AK056098|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2171|NULL|-0.8542500|-0.1915389	chr20	 56285238	 56287807	+	NA	NA	NA	NA	PMEPA1	NA	chr20:56275238-56286541	inner
CUST_27766_PI429285431	5.2304	P	5.6317887	P	0.757129139946139	0	lncRNA	29351-1_{1..524}	n324986|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079327|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079327|-1.1480400|-0.2802433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324986|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079327|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079327|-1.1480400|-0.2802433	chr20	 41956773	 41957296	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47654_PI429285431	0.9229771	A	0.91228867	A	1.00743616710475	0	lncRNA	51638-1_{1..668}	"gi|336285280|ref|NR_038462.1| Homo sapiens uncharacterized LOC100128420 (LOC100128420), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336285280|ref|NR_038462.1| Homo sapiens uncharacterized LOC100128420 (LOC100128420), transcript variant 2, non-coding RNA"	ChrX	135721702	135722369	+	100128420	NR_038462.1	NA	NA	NA	NA	NA	inter
CUST_42252_PI429285431	8.201578	P	8.704936	P	0.705462841712943	0	lncRNA	44389-1_{1..68}	ENST00000387461 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:15956:16023:-1 gene:ENSG00000210196 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000387461 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:15956:16023:-1 gene:ENSG00000210196 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	chrMT	    15956	    16023	-	ENSG00000210196	ENST00000387461	NA	NA	NA	NA	NA	Unknown
CUST_31575_PI429285431	10.082128	P	8.8802185	P	2.30043947602108	0	lncRNA	33332-1_{1..1448}	n338076|BC029553|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|463|NULL|-1.1141300|-0.2140195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338076|BC029553|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|463|NULL|-1.1141300|-0.2140195	chr22	 38879445	 38880892	-	NA	NA	NA	NA	KDELR3	NA	chr22:38869445-38879445	inner
CUST_45982_PI429285431	2.3026686	A	1.4657394	A	1.78624404294898	0	lncRNA	50272-1_{1..2711}	"gi|380422397|ref|NR_046444.1| Homo sapiens C-type lectin domain family 2, member D pseudogene (LOC374443), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|380422397|ref|NR_046444.1| Homo sapiens C-type lectin domain family 2, member D pseudogene (LOC374443), transcript variant 1, non-coding RNA"	Chr12	  9800643	  9803353	+	374443	NR_046444.1	NA	NA	NA	NA	NA	inter
CUST_50415_PI429285431	6.2718306	P	6.0653706	P	1.15385344993584	0	lncRNA	54119-1_{1..1135}	hg19_lincRNAsTranscripts_TCONS_l2_00030433 range=chrX:3823394-3849842 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030433 range=chrX:3823394-3849842 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	  3823394	  3824528	-	NA	NA	NA	NA	LOC729162	NA	chrX:3823728-3849743	inter
CUST_22547_PI429285431	8.172904	P	7.6824646	P	1.40487269107469	0	lncRNA	24134-1_{1..681}	lnc-CXorf48-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-CXorf48-2:1	chrX	134254368	134255048	-	lnc-CXorf48-2	lnc-CXorf48-2:1	ENSG00000224107.1	RP11-85L21.3	NA	NA	NA	inter
CUST_27528_PI429285431	2.6247284	A	2.3546202	A	1.20589826489048	0	lncRNA	29104-1_{1..416}	n324713|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320112|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320112|-1.0123700|-0.1510894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324713|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320112|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320112|-1.0123700|-0.1510894	chr22	 20003558	 20003973	-	NA	NA	NA	NA	C22orf25	NA	chr22:20008631-20019256	inner
CUST_34801_PI429285431	0.91415626	A	0.90475154	A	1.00654014913385	0	lncRNA	36237-1_{1..3000}	n341708|BC040335|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4180|NULL|-1.0221700|-0.4027181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341708|BC040335|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4180|NULL|-1.0221700|-0.4027181	chr9	 82503915	 82506914	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13326_PI429285431	0.9026219	A	0.9037442	A	0.99922238341986	0	lncRNA	14962-1_{1..388}	lnc-BATF3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BATF3-2:1	chr1	212811656	212812043	-	lnc-BATF3-2	lnc-BATF3-2:1	XLOC_001195	linc-TMEM206-2	NA	NA	NA	inter
CUST_6403_PI429285431	2.5305636	A	3.4170685	P	0.540922982310816	0	lncRNA	6339-1_{1..572}	"transcript_id ""ENST00000598922.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598922.1"" | genecode_v17"	chr19	 23585219	 23585790	-	ENSG00000269416.1	ENST00000598922.1	CTB-175P5.4	CTB-175P5.4-004	ZNF91	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr19:23575219-23578269"	NA	inter
CUST_21613_PI429285431	4.813139	P	5.1269474	P	0.804515209098541	0	lncRNA	23226-1_{1..560}	lnc-BLID-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BLID-1:14	chr11	121940786	121941345	-	lnc-BLID-1	lnc-BLID-1:14	ENSG00000255248.2	RP11-166D19.1	NA	NA	NA	inter
CUST_35176_PI429285431	0.9243323	A	0.9205726	A	1.00260942409076	0	lncRNA	36578-1_{1..900}	n342155|BC031960|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4642|NULL|-0.9983400|-0.2213661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342155|BC031960|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4642|NULL|-0.9983400|-0.2213661	chr6	151517807	151518706	-	NA	NA	NA	NA	AKAP12	NA	chr6:151546663-151559594	inter
CUST_50993_PI429285431	1.1765525	A	0.93023217	A	1.18617784416357	0	lncRNA	54638-1_{1..1679}	hg19_lincRNAsTranscripts_TCONS_l2_00005997 range=chr12:127221209-127230586 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005997 range=chr12:127221209-127230586 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	127221209	127222887	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47580_PI429285431	9.274489	P	9.227168	P	1.03334428146323	0	lncRNA	51584-1_{1..684}	"gi|358030259|ref|NR_045560.1| Homo sapiens ubiquitously-expressed, prefoldin-like chaperone (UXT), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|358030259|ref|NR_045560.1| Homo sapiens ubiquitously-expressed, prefoldin-like chaperone (UXT), transcript variant 4, non-coding RNA"	ChrX	 47511191	 47511874	-	8409	NR_045560.1	NA	NA	NA	NA	NA	inter
CUST_36753_PI429285431	0.92282796	A	0.9466845	A	0.983599877247892	0	lncRNA	37926-1_{1..254}	n345233|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_782|NULL|-1.1540900|-0.1901308	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345233|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_782|NULL|-1.1540900|-0.1901308	chr13	 95301301	 95301554	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28166_PI429285431	0.9253257	A	1.0098716	A	0.943081331727179	0	lncRNA	29792-3_{6001..8839}	n325444|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323302|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323302|-0.9757700|-0.2673879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325444|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323302|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323302|-0.9757700|-0.2673879	chr2	  8623413	  8626251	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5356_PI429285431	5.375579	P	5.662551	P	0.819620514777324	0	lncRNA	5294-1_{1..686}	"transcript_id ""ENST00000554798.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554798.1"" | genecode_v17"	chr15	 98563824	 98564509	+	ENSG00000258483.1	ENST00000554798.1	AC144835.1	AC144835.1-001	NA	NA	NA	inter
CUST_1964_PI429285431	4.901313	P	5.7267704	P	0.564303264216729	0	lncRNA	1957-1_{1..747}	"transcript_id ""ENST00000503778.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503778.1"" | genecode_v17"	chr4	165928238	165928984	-	ENSG00000250887.1	ENST00000503778.1	RP11-366M4.13	RP11-366M4.13-001	TRIM60	NA	chr4:165931611-165939111	inter
CUST_3077_PI429285431	2.5205836	A	3.2196693	P	0.615962445795472	0	lncRNA	3056-1_{1..397}	"transcript_id ""ENST00000522471.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522471.1"" | genecode_v17"	chr8	 37455153	 37455549	-	ENSG00000254290.1	ENST00000522471.1	RP11-150O12.3	RP11-150O12.3-002	NA	NA	NA	inter
CUST_51468_PI429285431	0.92411125	A	0.9268455	A	0.998106557150428	0	lncRNA	55044-2_{3001..5098}	hg19_lincRNAsTranscripts_TCONS_l2_00010127 range=chr16:33487872-33509669 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010127 range=chr16:33487872-33509669 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 33490872	 33492969	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50"	NA	inter
CUST_37577_PI429285431	7.5133214	P	7.833196	P	0.801139510135448	0	lncRNA	38679-1_{1..629}	n346053|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1603|NULL|-1.3067300|-0.0916137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346053|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1603|NULL|-1.3067300|-0.0916137	chr3	195389552	195390180	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14324_PI429285431	1.8083082	A	1.3974187	M	1.32950527379893	0	lncRNA	15982-1_{1..398}	lnc-CDH11-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH11-3:5	chr16	 65397566	 65397963	-	lnc-CDH11-3	lnc-CDH11-3:5	XLOC_011977	linc-CDH11-7	NA	NA	NA	inter
CUST_1991_PI429285431	1.0123078	A	1.3830698	A	0.773373909675208	0	lncRNA	1982-1_{1..255}	"transcript_id ""ENST00000503093.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000503093.1"" | genecode_v17"	chr4	178607827	178608081	-	ENSG00000251416.1	ENST00000503093.1	RP11-140M13.1	RP11-140M13.1-001	NA	NA	NA	inter
CUST_18429_PI429285431	5.8166437	P	5.8234434	P	0.99529789678051	0	lncRNA	20152-1_{1..893}	lnc-BCL7A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BCL7A-1:3	chr12	122503162	122504054	+	lnc-BCL7A-1	lnc-BCL7A-1:3	ENSG00000256546	AC156455.1	BCL7A	NA	chr12:122493162-122499950	inter
CUST_44372_PI429285431	0.92900264	A	0.9703162	A	0.971769757449582	0	lncRNA	48992-1_{1..564}	"gi|387157903|ref|NR_046622.1| Homo sapiens LNX1 antisense RNA 1 (LNX1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|387157903|ref|NR_046622.1| Homo sapiens LNX1 antisense RNA 1 (LNX1-AS1), non-coding RNA"	Chr4	 54366244	 54366807	+	100873939	NR_046622.1	NA	NA	NA	NA	NA	inter
CUST_2686_PI429285431	1.1273357	A	2.429068	A	0.405638839323455	0	lncRNA	2672-1_{1..2002}	"transcript_id ""ENST00000430078.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000430078.1"" | genecode_v17"	chr6	160007987	160009988	-	ENSG00000237927.1	ENST00000430078.1	RP3-393E18.2	RP3-393E18.2-001	NA	NA	NA	inter
CUST_40330_PI429285431	0.8916521	A	0.9211314	A	0.979773855461427	0	lncRNA	41134-1_{1..603}	n408372|NR_029462_4|lncRNA|Homosapiens||RefGeneNoncode|NR_029462_4||-1.0023000|-0.3878928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408372|NR_029462_4|lncRNA|Homosapiens||RefGeneNoncode|NR_029462_4||-1.0023000|-0.3878928	chr6	  2884757	  2885359	+	NA	NA	NA	NA	SERPINB9	NA	chr6:2887504-2897488	inter
CUST_7122_PI429285431	2.578077	A	2.0221174	A	1.47014616709471	0	lncRNA	7059-1_{1..520}	"transcript_id ""ENST00000437772.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437772.1"" | genecode_v17"	chrX	150084286	150084805	+	ENSG00000230153.1	ENST00000437772.1	AF003626.1	AF003626.1-001	NA	NA	NA	inter
CUST_10840_PI429285431	4.23243	P	4.0293555	P	1.151148934508	0	lncRNA	12376-1_{1..538}	lnc-C14orf23-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf23-3:1	chr14	 29534152	 29534689	+	lnc-C14orf23-3	lnc-C14orf23-3:1	XLOC_010783	linc-G2E3-3	NA	NA	NA	inter
CUST_682_PI429285431	3.3935168	P	3.4719296	P	0.947099037283066	0	lncRNA	675-1_{1..693}	"transcript_id ""ENST00000586753.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586753.1"" | genecode_v17"	chr2	  6757788	  6758480	-	ENSG00000236172.2	ENST00000586753.1	AC097517.2	AC097517.2-046	NA	NA	NA	inter
CUST_32709_PI429285431	5.8260098	P	4.6522813	P	2.25593969089201	0	lncRNA	34352-2_{3001..4130}	n339340|AL832553|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1772|NULL|1.3738200|-0.2723003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339340|AL832553|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1772|NULL|1.3738200|-0.2723003	chr3	 44486132	 44487261	-	NA	NA	NA	NA	ZNF445	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40chr3:44481262-44497246"	NA	inner
CUST_50041_PI429285431	6.992399	P	4.843873	P	4.43374562014015	0	lncRNA	53777-1_{1..655}	hg19_lincRNAsTranscripts_TCONS_l2_00028188 range=chr8:47505119-47526150 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028188 range=chr8:47505119-47526150 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 47505119	 47505773	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4618_PI429285431	1.0932186	A	0.9200928	A	1.12749872339729	0	lncRNA	4564-1_{1..588}	"transcript_id ""ENST00000593640.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593640.1"" | genecode_v17"	chr13	 47029504	 47030091	-	ENSG00000231817.2	ENST00000593640.1	RP11-189B4.6	RP11-189B4.6-008	LOC731932	"hg19_refFlat_OR7A17:range=chr19:14991238-149921675'pad=0,hg19_refFlat_OR7A17:range=chr19:14991238-149921675'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_OR1E1:range=chr17:3300760-33017045'pad=0,hg19_refFlat_OR1E1:range=chr17:3300760-33017045'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_OR1K1:range=chr9:125562402-1255633525'pad=0,hg19_refFlat_OR1K1:range=chr9:125562402-1255633525'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90;hg19_refFlat_OR1J2:range=chr9:125273081-1252740225'pad=0,hg19_refFlat_OR1J2:range=chr9:125273081-1252740225'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_OR7A5:range=chr19:14938094-149390535'pad=0,hg19_refFlat_OR7A5:range=chr19:14938094-149390535'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80chr13:47019504-47035198"	NA	inter
CUST_9483_PI429285431	0.9392042	A	1.116731	A	0.884217504412013	0	lncRNA	10991-1_{1..826}	lnc-FSCB-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FSCB-1:6	chr14	 44913910	 44914735	-	lnc-FSCB-1	lnc-FSCB-1:6	XLOC_011006	linc-FBXO33-2	NA	NA	NA	inter
CUST_8718_PI429285431	2.7004986	A	3.4168148	A	0.608649595069622	0	lncRNA	10261-1_{1..1590}	lnc-SPTBN5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPTBN5-2:1	chr15	 42064707	 42066296	-	lnc-SPTBN5-2	lnc-SPTBN5-2:1	ENSG00000246549	ENST00000399579	MAPKBP1	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70chr15:42066632-42075278"	NA	inter
CUST_11430_PI429285431	6.153172	P	6.2848463	P	0.912771530793485	0	lncRNA	12998-1_{1..317}	lnc-TCF7L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TCF7L2-1:1	chr10	114665736	114666052	+	lnc-TCF7L2-1	lnc-TCF7L2-1:1	XLOC_008619	linc-TCF7L2-1	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10"	NA	inter
CUST_14527_PI429285431	1.0909111	A	0.9157243	A	1.12911059246081	0	lncRNA	16195-1_{1..652}	lnc-MTHFSD-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-MTHFSD-5:3	chr16	 86755371	 86756022	-	lnc-MTHFSD-5	lnc-MTHFSD-5:3	XLOC_012048	linc-MTHFSD-6	NA	NA	NA	inter
CUST_49124_PI429285431	3.0351179	A	3.0611815	A	0.982096299417997	0	lncRNA	52951-1_{1..751}	hg19_lincRNAsTranscripts_TCONS_l2_00020580 range=chr4:75811662-75828412 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020580 range=chr4:75811662-75828412 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 75811662	 75812412	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38304_PI429285431	2.3972158	A	2.559397	A	0.893672911536834	0	lncRNA	39355-1_{1..1408}	n381981|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uny.2||0.6633270|-0.2706270	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381981|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uny.2||0.6633270|-0.2706270	chr13	 21872311	 21873718	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39021_PI429285431	7.749042	P	7.6243896	P	1.09024501960687	0	lncRNA	40001-1_{1..2013}	n385360|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wvz.1||1.0088100|-0.2358446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385360|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wvz.1||1.0088100|-0.2358446	chr8	 12426978	 12428990	+	NA	NA	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_RPS3A:range=chr4:152020805-1520240335'pad=0,hg19_refFlat_RPS3A:range=chr4:152020805-1520240335'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_RPS3A:range=chr4:152020805-1520257455'pad=0,hg19_refFlat_RPS3A:range=chr4:152020805-1520257455'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80"	NA	inter
CUST_36215_PI429285431	0.92404896	A	0.9202293	A	1.00265109451218	0	lncRNA	37469-2_{3001..5333}	n344759|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_308|NULL|-1.3519900|-0.2811059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344759|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_308|NULL|-1.3519900|-0.2811059	chr6	 14793200	 14795532	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30"	NA	inter
CUST_3959_PI429285431	1.0230895	A	0.9874573	A	1.02500589005312	0	lncRNA	3929-1_{1..470}	"transcript_id ""ENST00000532591.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532591.1"" | genecode_v17"	chr11	 60421191	 60421660	+	ENSG00000181995.7	ENST00000532591.1	LINC00301	LINC00301-004	NA	NA	NA	inter
CUST_28545_PI429285431	0.9236456	A	0.929261	A	0.996115266498291	0	lncRNA	30217-1_{1..456}	n325894|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050226|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050226|-0.9621780|-0.2679039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325894|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050226|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050226|-0.9621780|-0.2679039	chr10	107558522	107558977	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29637_PI429285431	1.0410166	A	0.9214499	A	1.086408520855	0	lncRNA	31398-1_{1..760}	n333213|AF467252|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000080345|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000080345|1.6049500|-0.1409754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333213|AF467252|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000080345|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000080345|1.6049500|-0.1409754	chr7	113928074	113928833	+	NA	NA	NA	NA	FOXP2	NA	chr7:113918074-114281650	inner
CUST_49726_PI429285431	9.974799	P	9.553477	P	1.33915411397504	0	lncRNA	53499-2_{3001..3551}	hg19_lincRNAsTranscripts_TCONS_l2_00026455 range=chr7:29638359-29727696 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026455 range=chr7:29638359-29727696 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 29641359	 29641909	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_DPY19L2:range=chr12:63954292-640621735'pad=0,hg19_refFlat_DPY19L2:range=chr12:63954292-640621735'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
CUST_37507_PI429285431	1.6657182	A	2.7065165	A	0.486058443995672	0	lncRNA	38610-1_{1..470}	n345980|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1529|NULL|-1.3231800|-0.2244941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345980|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1529|NULL|-1.3231800|-0.2244941	chr15	 23185170	 23185639	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35014_PI429285431	1.3409712	A	1.2452981	A	1.06856383809673	0	lncRNA	36428-1_{1..1056}	n341948|CR619980|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4429|NULL|-0.3191120|-0.3214890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341948|CR619980|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4429|NULL|-0.3191120|-0.3214890	chr12	 65103237	 65104292	+	NA	NA	NA	NA	GNS	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00chr12:65107222-65114293"	NA	inter
CUST_14190_PI429285431	1.0113277	A	0.9086432	A	1.07376962547949	0	lncRNA	15842-1_{1..813}	lnc-PI3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PI3-1:4	chr20	 43819187	 43819999	+	lnc-PI3-1	lnc-PI3-1:4	XLOC_013531	linc-SEMG1	NA	NA	NA	inter
CUST_36130_PI429285431	6.2293825	P	6.2044683	P	1.01741918232119	0	lncRNA	37416-3_{6001..8245}	n344703|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_252|NULL|-1.2792600|-0.3596951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344703|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_252|NULL|-1.2792600|-0.3596951	chr2	186903622	186905866	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
CUST_36329_PI429285431	5.44564	P	5.7033143	P	0.836435210571472	0	lncRNA	37560-1_{1..1001}	n344855|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_404|NULL|-1.3270200|-0.3112722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344855|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_404|NULL|-1.3270200|-0.3112722	chr5	142090473	142091473	-	NA	NA	NA	NA	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70"	NA	inter
LNCA_21_P0003596	3.736163	P	4.267513	P	0.691906979982495	0	lncRNA	TCONS_00008037	NA	NA	NA	NA	XLOC_003505	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003505), lincRNA [TCONS_00008037]"	chr4:34862088-34862147	hs|4p15.1	Agilent_HUMAN_G3V2	TCONS_00008037	TCONS_00008037	chr4	 34862088	 34862147	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52076_PI429285431	3.015721	A	2.7626839	A	1.19171321999164	0	lncRNA	55605-1_{1..727}	hg19_lincRNAsTranscripts_TCONS_l2_00017540 range=chr22:16414984-16415911 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017540 range=chr22:16414984-16415911 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 16414984	 16415710	+	NA	NA	NA	NA	OR11H1	NA	chr22:16404984-16425911	inter
CUST_20132_PI429285431	4.5316906	P	4.790537	P	0.83575593495247	0	lncRNA	21779-1_{1..439}	lnc-HS3ST3A1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HS3ST3A1-4:2	chr17	 13796042	 13796480	-	lnc-HS3ST3A1-4	lnc-HS3ST3A1-4:2	ENSG00000236088.2	AC015842.1	NA	NA	NA	inter
CUST_43055_PI429285431	1.0425087	A	1.4429603	A	0.75762109158936	0	lncRNA	46778-1_{1..104}	ENST00000517023 ncrna:snRNA chromosome:GRCh37:10:20081927:20082030:-1 gene:ENSG00000252832 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517023 ncrna:snRNA chromosome:GRCh37:10:20081927:20082030:-1 gene:ENSG00000252832 gene_biotype:snRNA transcript_biotype:snRNA	chr10	 20081927	 20082030	-	ENSG00000252832	ENST00000517023	NA	NA	PLXDC2	NA	chr10:20071927-20092030	inter
CUST_5475_PI429285431	0.9152615	A	1.2434573	A	0.796531985047863	0	lncRNA	5409-1_{1..717}	"transcript_id ""ENST00000562900.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562900.1"" | genecode_v17"	chr16	 26733195	 26733911	+	ENSG00000260580.1	ENST00000562900.1	RP11-142A12.1	RP11-142A12.1-001	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70"	NA	inter
CUST_6651_PI429285431	1.0567439	A	0.92092025	A	1.09871990568657	0	lncRNA	6597-1_{1..833}	"transcript_id ""ENST00000422574.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422574.1"" | genecode_v17"	chr20	 16838607	 16839439	-	ENSG00000236985.1	ENST00000422574.1	RP5-1195D24.1	RP5-1195D24.1-001	NA	NA	NA	inter
CUST_47710_PI429285431	2.6786914	A	2.4728963	A	1.15332179191121	0	lncRNA	51673-2_{3001..5678}	"gi|385137093|ref|NR_047630.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 60, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137093|ref|NR_047630.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 60, non-coding RNA"	ChrY	 15363259	 15365936	-	7404	NR_047630.1	NA	NA	NA	NA	NA	inter
CUST_10823_PI429285431	1.3766323	A	2.889026	A	0.35052914299279	0	lncRNA	12358-1_{1..874}	lnc-ARRDC4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARRDC4-2:2	chr15	 98564545	 98565418	+	lnc-ARRDC4-2	lnc-ARRDC4-2:2	XLOC_011376	linc-IGF1R	NA	NA	NA	inter
CUST_37160_PI429285431	4.401547	P	4.4734993	P	0.951349730402597	0	lncRNA	38277-1_{1..1140}	n345596|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1145|NULL|-1.4771400|-0.2224552	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345596|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1145|NULL|-1.4771400|-0.2224552	chr3	131087718	131088857	+	NA	NA	NA	NA	NUDT16	NA	chr3:131100515-131100842	inter
CUST_1726_PI429285431	1.16066	A	1.1996846	A	0.973312777651154	0	lncRNA	1712-1_{1..602}	"transcript_id ""ENST00000505636.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505636.1"" | genecode_v17"	chr4	 31351906	 31352507	+	ENSG00000251434.1	ENST00000505636.1	RP11-315A17.1	RP11-315A17.1-001	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
CUST_29830_PI429285431	6.0814853	P	6.05188	P	1.02073283011589	0	lncRNA	31593-1_{1..743}	n333669|D82340|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000101768|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000101768|1.9437400|-0.0816316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333669|D82340|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000101768|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000101768|1.9437400|-0.0816316	chr10	 50821154	 50821896	+	NA	NA	NA	NA	CHAT	NA	chr10:50817141-50840212	inner
CUST_51647_PI429285431	0.91348404	A	0.90233386	A	1.00775865944612	0	lncRNA	55217-1_{1..829}	hg19_lincRNAsTranscripts_TCONS_l2_00011380 range=chr17:58209046-58210407 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011380 range=chr17:58209046-58210407 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 58209046	 58209874	-	NA	NA	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80"	NA	inter
CUST_21689_PI429285431	1.242681	A	1.488804	A	0.843159221872858	0	lncRNA	23299-1_{1..481}	lnc-ZNF827-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF827-5:1	chr4	146438166	146438646	-	lnc-ZNF827-5	lnc-ZNF827-5:1	ENSG00000250902.1	RP11-301H24.4	SMAD1	"hg19_refFlat_SMAD1:range=chr4:146435766-1464790865'pad=0,hg19_refFlat_SMAD1:range=chr4:146435766-1464790865'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.10chr4:146428166-146448270"	NA	inner
CUST_7013_PI429285431	1.6601255	A	0.9342252	A	1.65393243500222	0	lncRNA	6960-1_{1..548}	"transcript_id ""ENST00000453953.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453953.1"" | genecode_v17"	chrX	  1886240	  1886787	+	ENSG00000234622.1	ENST00000453953.1	RP13-297E16.5	RP13-297E16.5-001	NA	NA	NA	inter
CUST_26065_PI429285431	2.9108253	A	2.4134247	A	1.41166777350259	0	lncRNA	27578-1_{1..1965}	lnc-ACER2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-ACER2-1:1	chr9	 19453207	 19455171	+	lnc-ACER2-1	lnc-ACER2-1:1	ENSG00000260912.1	RP11-363E7.4	ACER2	NA	chr9:19443207-19452500	inter
LNCA_21_P0001859	0.99356514	A	0.9256902	A	1.04817161083685	0	lncRNA	XR_109988	XR_109988	XR_109988	NA	NA	LOC100506300	uncharacterized LOC100506300	ENST00000435357	THC2667222	NA	"PREDICTED: Homo sapiens hypothetical LOC100506300 (LOC100506300), miscRNA [XR_109988]"	chr2:52616951-52617010	hs|2p16.3	Agilent_HUMAN_G3V2	XR_109988	XR_109988	chr2	 52616951	 52617010	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11258_PI429285431	4.5702834	P	5.335987	P	0.588166450839137	0	lncRNA	12816-1_{1..376}	lnc-OPN4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OPN4-1:2	chr10	 88282246	 88282621	+	lnc-OPN4-1	lnc-OPN4-1:2	XLOC_008542	linc-OPN4-1	WAPAL	NA	chr10:88272246-88281541	inter
CUST_18026_PI429285431	5.218659	P	5.8013515	P	0.66771645540879	0	lncRNA	19760-1_{1..424}	lnc-PPIA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPIA-1:1	chr7	 44889058	 44889481	+	lnc-PPIA-1	lnc-PPIA-1:1	XLOC_006069	linc-CCM2-2	H2AFV	NA	chr7:44879058-44887725	inter
CUST_46433_PI429285431	3.0153487	P	2.321991	A	1.61704261543159	0	lncRNA	50643-1_{1..638}	"gi|393202552|ref|NR_072991.1| Homo sapiens hect domain and RLD 2 pseudogene 10 (HERC2P10), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393202552|ref|NR_072991.1| Homo sapiens hect domain and RLD 2 pseudogene 10 (HERC2P10), non-coding RNA"	Chr15	 31110239	 31110876	+	390561	NR_072991.1	NA	NA	NA	NA	NA	inter
CUST_43048_PI429285431	1.117052	A	0.92290276	A	1.14404931359038	0	lncRNA	46721-1_{1..102}	ENST00000516651 ncrna:snRNA chromosome:GRCh37:4:104845697:104845798:1 gene:ENSG00000252460 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516651 ncrna:snRNA chromosome:GRCh37:4:104845697:104845798:1 gene:ENSG00000252460 gene_biotype:snRNA transcript_biotype:snRNA	chr4	104845697	104845798	+	ENSG00000252460	ENST00000516651	NA	NA	NA	NA	NA	inter
CUST_6274_PI429285431	0.91475976	A	0.90726423	A	1.00520902552928	0	lncRNA	6198-1_{1..1465}	"transcript_id ""ENST00000583106.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583106.1"" | genecode_v17"	chr18	 75683460	 75684924	-	ENSG00000265843.1	ENST00000583106.1	RP11-671C19.1	RP11-671C19.1-001	NA	NA	NA	inter
CUST_21180_PI429285431	5.3441987	P	5.626434	P	0.822315940074727	0	lncRNA	22805-1_{1..843}	lnc-SPINK4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPINK4-1:1	chr9	 33179323	 33180165	+	lnc-SPINK4-1	lnc-SPINK4-1:1	ENSG00000233554.1	RP11-326F20.5	NA	"hg19_refFlat_B4GALT1:range=chr9:33113452-331671675'pad=0,hg19_refFlat_B4GALT1:range=chr9:33113452-331671675'pad=0 3'pad=0 strand=- repeatMasking=none,-101.50"	NA	inter
CUST_50854_PI429285431	3.4667447	P	4.0722504	P	0.657240960642752	0	lncRNA	54498-1_{1..918}	hg19_lincRNAsTranscripts_TCONS_l2_00004710 range=chr11:88157567-88161394 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004710 range=chr11:88157567-88161394 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 88157567	 88158484	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29078_PI429285431	3.4848523	P	3.4567654	P	1.01965909979431	0	lncRNA	30809-1_{1..499}	n326571|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026184|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026184|-1.2918700|-0.4203096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326571|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026184|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026184|-1.2918700|-0.4203096	chr1	 72987191	 72987689	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7550_PI429285431	2.3430274	A	3.1298387	A	0.579623783972838	0	lncRNA	9186-1_{1..290}	lnc-PTCH1-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PTCH1-3:6	chr9	 98637262	 98637551	-	lnc-PTCH1-3	lnc-PTCH1-3:6	ENSG00000175611	C9orf130	C9orf102	NA	chr9:98637900-98647352	inter
CUST_23460_PI429285431	1.6223772	A	1.2832154	A	1.265021408085	0	lncRNA	25027-1_{1..501}	lnc-PTGDR2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTGDR2-2:1	chr11	 60610090	 60610590	-	lnc-PTGDR2-2	lnc-PTGDR2-2:1	ENSG00000255959.1	RP11-804A23.2	GPR44	"hg19_refFlat_CCDC86:range=chr11:60609598-606177985'pad=0,hg19_refFlat_CCDC86:range=chr11:60609598-606177985'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80chr11:60618398-60620438"	NA	inner
CUST_23644_PI429285431	1.5372705	A	0.9092012	A	1.54549533553538	0	lncRNA	25209-1_{1..433}	lnc-C2orf40-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf40-1:1	chr2	106799872	106800304	+	lnc-C2orf40-1	lnc-C2orf40-1:1	ENSG00000233339.1	AC018878.3	UXS1	NA	chr2:106789872-106810253	inter
LNCA_21_P0010653	0.9612764	A	1.5099919	A	0.683628524479241	0	lncRNA	TCONS_l2_00001507	NA	NA	NA	NA	XLOC_l2_001097	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001097), lincRNA [TCONS_l2_00001507]"	chr1:146856415-146853857	hs|1q21.1	Agilent_HUMAN_G3V2	TCONS_l2_00001507	TCONS_l2_00001507	chr1	146853857	146856415	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13116_PI429285431	1.0016726	A	0.98828214	A	1.00932476684309	0	lncRNA	14741-1_{1..305}	lnc-PPIAL4G-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-PPIAL4G-3:2	chr1	143529161	143529465	-	lnc-PPIAL4G-3	lnc-PPIAL4G-3:2	XLOC_000999	linc-FCGR1B-4	NA	NA	NA	inter
CUST_25473_PI429285431	0.9224101	A	0.91431427	A	1.00562737626882	0	lncRNA	27003-1_{1..781}	lnc-EEF1B2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EEF1B2-3:1	chr2	206865029	206865809	+	lnc-EEF1B2-3	lnc-EEF1B2-3:1	ENSG00000225610.1	AC007679.3	INO80D	NA	chr2:206858445-206875582	inner
CUST_3537_PI429285431	0.96183646	A	0.92191297	A	1.02805930445915	0	lncRNA	3506-1_{1..301}	"transcript_id ""ENST00000439471.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439471.2"" | genecode_v17"	chr9	125163249	125163549	-	ENSG00000233616.2	ENST00000439471.2	RP11-542K23.10	RP11-542K23.10-001	PTGS1	NA	chr9:125153249-125157981	inter
CUST_29082_PI429285431	1.1046076	A	0.9184747	A	1.13771002805159	0	lncRNA	30813-1_{1..458}	n326575|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025522|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025522|-1.2603100|-0.5414160	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326575|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025522|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025522|-1.2603100|-0.5414160	chr1	 69671525	 69671982	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45881_PI429285431	0.906698	A	0.92193484	A	0.989494202786701	0	lncRNA	50204-1_{1..1133}	"gi|310120767|ref|XR_110905.1| PREDICTED: Homo sapiens uncharacterized LOC100131541 (LOC100131541), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120767|ref|XR_110905.1| PREDICTED: Homo sapiens uncharacterized LOC100131541 (LOC100131541), misc_RNA"	NA	NA	NA	NA	NA	XR_110905.1	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	Unknown
CUST_2517_PI429285431	5.12127	P	4.130498	P	1.98724810199165	0	lncRNA	2505-3_{6001..7090}	"transcript_id ""ENST00000429998.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429998.2"" | genecode_v17"	chr6	 34253456	 34254545	+	ENSG00000225339.2	ENST00000429998.2	RP11-513I15.6	RP11-513I15.6-001	NUDT3	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60chr6:34254971-34264545"	NA	inter
CUST_16396_PI429285431	1.6115254	A	2.7617707	A	0.450548618459821	0	lncRNA	18092-1_{1..356}	lnc-BRE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BRE-1:1	chr2	 28585795	 28586150	+	lnc-BRE-1	lnc-BRE-1:1	XLOC_001407	linc-FOSL2	NA	NA	NA	inter
CUST_25030_PI429285431	3.3434534	P	2.350203	A	1.99066492153199	0	lncRNA	26569-1_{1..964}	lnc-NPAT-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPAT-2:1	chr11	107992023	107992986	-	lnc-NPAT-2	lnc-NPAT-2:1	ENSG00000255467.1	RP11-144G7.2	ACAT1	"hg19_refFlat_ACAT1:range=chr11:107992334-1080181175'pad=0,hg19_refFlat_ACAT1:range=chr11:107992334-1080181175'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.60chr11:107992258-108002411"	NA	inner
CUST_30377_PI429285431	7.0179114	P	7.624297	P	0.656840231461491	0	lncRNA	32153-1_{1..445}	n335487|BC054019|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259403|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259403|1.7436200|-0.2981998	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335487|BC054019|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259403|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259403|1.7436200|-0.2981998	chr1	  1650754	  1651198	-	NA	NA	NA	NA	CDK11A	NA	chr1:1640754-1655791	inner
CUST_32466_PI429285431	9.400034	P	9.768542	P	0.774583137674234	0	lncRNA	34137-1_{1..3000}	n339070|CR749843|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1500|NULL|-1.0376300|-0.3445410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339070|CR749843|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1500|NULL|-1.0376300|-0.3445410	chr16	  9847267	  9850266	-	NA	NA	NA	NA	GRIN2A	NA	chr16:9847265-9864556	inner
CUST_20191_PI429285431	1.3854995	A	1.421377	A	0.975438282992604	0	lncRNA	21834-1_{1..660}	lnc-LRP5L-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRP5L-3:1	chr22	 25977034	 25977693	-	lnc-LRP5L-3	lnc-LRP5L-3:1	ENSG00000237387.1	CTA-407F11.7	ADRBK2	NA	chr22:25967034-25987349	inner
CUST_46797_PI429285431	3.266584	P	3.419198	A	0.899618977336831	0	lncRNA	50942-1_{1..670}	"gi|60593078|ref|NR_002221.1| Homo sapiens divergent-paired related homeobox pseudogene 4 (DPRXP4), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|60593078|ref|NR_002221.1| Homo sapiens divergent-paired related homeobox pseudogene 4 (DPRXP4), non-coding RNA"	Chr17	 29302353	 29303022	+	503645	NR_002221.1	NA	NA	NA	NA	NA	inter
CUST_19675_PI429285431	3.3721807	P	3.0861502	A	1.21928087060731	0	lncRNA	21332-1_{1..640}	lnc-IL15RA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL15RA-1:1	chr10	  5987618	  5988257	-	lnc-IL15RA-1	lnc-IL15RA-1:1	ENSG00000232807.1	RP11-536K7.3	FBXO18	"hg19_refFlat_FBXO18:range=chr10:5932309-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5932309-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10;hg19_refFlat_FBXO18:range=chr10:5936453-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5936453-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10chr10:5977618-5979556"	NA	inter
CUST_45864_PI429285431	0.9014698	A	0.9090793	A	0.994739382298719	0	lncRNA	50193-1_{1..2196}	"gi|310120747|ref|XR_110894.1| PREDICTED: Homo sapiens uncharacterized LOC100289388 (LOC100289388), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310120747|ref|XR_110894.1| PREDICTED: Homo sapiens uncharacterized LOC100289388 (LOC100289388), misc_RNA"	NA	NA	NA	NA	NA	XR_110894.1	NA	NA	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_KCTD21:range=chr11:77884818-778856005'pad=0,hg19_refFlat_KCTD21:range=chr11:77884818-778856005'pad=0 3'pad=0 strand=- repeatMasking=none,-97.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60"	NA	Unknown
CUST_50828_PI429285431	6.4028597	P	6.9948263	P	0.663437929449141	0	lncRNA	54477-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00004566 range=chr11:65265310-65273493 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004566 range=chr11:65265310-65273493 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65268310	 65271309	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45199_PI429285431	0.92912215	A	0.91942346	A	1.00674526715776	0	lncRNA	49665-1_{1..1879}	"gi|223029498|ref|NR_026772.1| Homo sapiens long intergenic non-protein coding RNA 588 (LINC00588), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223029498|ref|NR_026772.1| Homo sapiens long intergenic non-protein coding RNA 588 (LINC00588), non-coding RNA"	Chr8	 58192102	 58193980	+	26138	NR_026772.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003201	0.92638403	A	0.91375715	A	1.00879069951487	0	lncRNA	TCONS_00006733	NA	NA	NA	NA	XLOC_003371	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003371), lincRNA [TCONS_00006733]"	chr3:190500089-190500030	hs|3q28	Agilent_HUMAN_G3V2	TCONS_00006733	TCONS_00006733	chr3	190500030	190500089	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26865_PI429285431	12.788385	P	12.440567	P	1.27263437877529	0	lncRNA	28379-1_{1..527}	n323937|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054979|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054979|-0.9346930|-0.0574676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323937|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054979|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054979|-0.9346930|-0.0574676	chr9	137236388	137236914	-	NA	NA	NA	NA	RXRA	NA	chr9:137226388-137279264	inner
CUST_963_PI429285431	0.95406055	A	0.947142	A	1.00480709059142	0	lncRNA	952-1_{1..669}	"transcript_id ""ENST00000431244.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431244.1"" | genecode_v17"	chr2	 98088089	 98088757	-	ENSG00000230606.5	ENST00000431244.1	AC159540.1	AC159540.1-005	NA	NA	NA	inter
CUST_41421_PI429285431	5.763801	P	5.5944896	P	1.12452162111489	0	lncRNA	42569-1_{1..86}	ENST00000385273 ncrna:miRNA chromosome:GRCh37:19:52196507:52196592:1 gene:ENSG00000208008 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385273 ncrna:miRNA chromosome:GRCh37:19:52196507:52196592:1 gene:ENSG00000208008 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 52196507	 52196592	+	ENSG00000208008	ENST00000385273	NA	NA	NA	NA	NA	inter
CUST_2803_PI429285431	0.9156945	A	1.3615453	A	0.734151238220486	0	lncRNA	2787-1_{1..1651}	"transcript_id ""ENST00000449644.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449644.1"" | genecode_v17"	chr7	 35756084	 35757734	+	ENSG00000227544.3	ENST00000449644.1	AC018647.3	AC018647.3-001	NA	NA	NA	inter
CUST_24694_PI429285431	9.678432	P	11.078844	P	0.378820943767271	0	lncRNA	26241-1_{1..3000}	lnc-AC003682.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC003682.1-1:1	chr19	 58071024	 58074023	-	lnc-AC003682.1-1	lnc-AC003682.1-1:1	ENSG00000105132.8	ZNF550	ZNF550	NA	chr19:58061024-58067725	inter
CUST_52209_PI429285431	0.9158795	A	0.9217796	A	0.995918713499843	0	lncRNA	55726-1_{1..681}	hg19_lincRNAsTranscripts_TCONS_l2_00017796 range=chr22:43800848-43805731 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017796 range=chr22:43800848-43805731 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 43800848	 43801528	+	NA	NA	NA	NA	MPPED1	NA	chr22:43808020-43815731	inter
CUST_2139_PI429285431	3.7803078	P	3.8121543	P	0.978167543071287	0	lncRNA	2130-1_{1..546}	"transcript_id ""ENST00000503870.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503870.1"" | genecode_v17"	chr5	 37948593	 37949138	+	ENSG00000251518.1	ENST00000503870.1	CTD-2130F23.2	CTD-2130F23.2-001	NA	NA	NA	inter
CUST_24478_PI429285431	4.304126	P	4.350278	P	0.968516142567488	0	lncRNA	26030-1_{1..886}	lnc-TRIM41-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM41-2:3	chr5	180684188	180685073	+	lnc-TRIM41-2	lnc-TRIM41-2:3	ENSG00000233937.2	CTC-338M12.4	TRIM52	"hg19_refFlat_TRIM52:range=chr5:180684415-1806878145'pad=0,hg19_refFlat_TRIM52:range=chr5:180684415-1806878145'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60chr5:180683373-180688119"	NA	inner
LNCA_21_P0006976	3.957009	P	3.9504576	P	1.00455141078768	0	lncRNA	ENST00000455612	NA	NA	NA	NA	XLOC_008752	NA	ENST00000455612	NA	NA	"BROAD Institute lincRNA (XLOC_008752), lincRNA [TCONS_00017940]"	chr10:26866702-26866643	hs|10p12.1	Agilent_HUMAN_G3V2	ENST00000455612	ENST00000455612	chr10	 26866643	 26866702	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47844_PI429285431	8.541122	P	8.565225	P	0.983431860228668	0	lncRNA	51750-1_{1..2959}	"gi|397140258|ref|XR_159551.1| PREDICTED: Homo sapiens uncharacterized LOC100653233 (LOC100653233), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ensembl.GRCh37.72,ncbi,"	">gi|397140258|ref|XR_159551.1| PREDICTED: Homo sapiens uncharacterized LOC100653233 (LOC100653233), misc_RNA"	NW_003571038.1	   130252	   133210	+	100653233	XR_159551.2	NA	NA	NA	NA	NA	Unknown
CUST_41340_PI429285431	7.7773733	P	7.652709	P	1.09025401247707	0	lncRNA	42403-1_{1..74}	ENST00000579607 ncrna:miRNA chromosome:GRCh37:5:99386069:99386142:1 gene:ENSG00000264839 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579607 ncrna:miRNA chromosome:GRCh37:5:99386069:99386142:1 gene:ENSG00000264839 gene_biotype:miRNA transcript_biotype:miRNA	chr5	 99386069	 99386142	+	ENSG00000264839	ENST00000579607	NA	NA	NA	NA	NA	inter
CUST_13785_PI429285431	1.3204856	A	0.9317428	A	1.30925199216354	0	lncRNA	15427-1_{1..584}	lnc-KIAA1755-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1755-5:5	chr20	 37063670	 37064253	-	lnc-KIAA1755-5	lnc-KIAA1755-5:5	XLOC_013739	linc-KIAA1755-4	NA	NA	NA	inter
CUST_27858_PI429285431	1.2069125	A	1.2767297	A	0.952758711884436	0	lncRNA	29451-1_{1..822}	n325094|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323096|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323096|-0.9569190|-0.2205482	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325094|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323096|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323096|-0.9569190|-0.2205482	chr2	242107059	242107880	+	NA	NA	NA	NA	PPP1R7	NA	chr2:242097059-242118335	inner
CUST_35463_PI429285431	0.890301	A	0.8914155	A	0.999227785778251	0	lncRNA	36867-1_{1..2186}	n342547|AK123270|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5045|NULL|-1.0301400|-0.2117906	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342547|AK123270|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5045|NULL|-1.0301400|-0.2117906	chr20	 11665791	 11667976	-	NA	NA	NA	NA	NA	"hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40"	NA	inter
CUST_29363_PI429285431	0.9180047	A	0.91517615	A	1.0019625246933	0	lncRNA	31115-1_{1..456}	n332621|BX537950|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000054734|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000054734|-1.0282600|-0.4119917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332621|BX537950|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000054734|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000054734|-1.0282600|-0.4119917	chr4	184154728	184155183	-	NA	NA	NA	NA	WWC2	NA	chr4:184144728-184171788	inner
CUST_14329_PI429285431	3.4757438	P	4.167227	P	0.619216920627882	0	lncRNA	15987-1_{1..313}	lnc-PFKP-13:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PFKP-13:1	chr10	  3810764	  3811076	+	lnc-PFKP-13	lnc-PFKP-13:1	XLOC_008353	linc-AKR1E2-10	KLF6	NA	chr10:3818188-3820943	inter
CUST_42693_PI429285431	1.5468504	A	1.9401605	A	0.761380697333139	0	lncRNA	45618-1_{1..147}	ENST00000365313 ncrna:snoRNA chromosome:GRCh37:X:81816650:81816796:1 gene:ENSG00000202183 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365313 ncrna:snoRNA chromosome:GRCh37:X:81816650:81816796:1 gene:ENSG00000202183 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	 81816650	 81816796	+	ENSG00000202183	ENST00000365313	NA	NA	NA	NA	NA	inter
CUST_13287_PI429285431	8.78661	P	8.888629	P	0.931728158553795	0	lncRNA	14920-1_{1..717}	lnc-AC003101.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC003101.1.1-1:1	chr17	 29911992	 29912708	+	lnc-AC003101.1.1-1	lnc-AC003101.1.1-1:1	XLOC_012165	linc-SUZ12-4	NA	NA	NA	inter
CUST_9217_PI429285431	0.93295586	A	0.9614763	A	0.980425260090084	0	lncRNA	10728-1_{1..3000}	lnc-PAICS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PAICS-1:1	chr4	 57285780	 57288779	+	lnc-PAICS-1	lnc-PAICS-1:1	ENSG00000223357	AC068620.1	PPAT	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00chr4:57275780-57299623"	NA	inner
CUST_19296_PI429285431	3.9174225	P	4.175448	P	0.836231619177914	0	lncRNA	20963-1_{1..537}	lnc-PAXIP1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAXIP1-3:4	chr7	153754518	153755054	-	lnc-PAXIP1-3	lnc-PAXIP1-3:4	ENSG00000203335.3	AC006019.3	DPP6	NA	chr7:153744518-153764712	inner
CUST_51445_PI429285431	1.0663177	A	0.92382383	A	1.10381153721445	0	lncRNA	55022-1_{1..2684}	hg19_lincRNAsTranscripts_TCONS_l2_00010090 range=chr16:30309497-30348051 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010090 range=chr16:30309497-30348051 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 30309497	 30312180	-	NA	NA	NA	NA	CD2BP2	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CA5A:range=chr16:87921735-879700565'pad=0,hg19_refFlat_CA5A:range=chr16:87921735-879700565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00chr16:30347721-30358051"	NA	inter
CUST_2723_PI429285431	0.9033625	A	0.8982881	A	1.00352349903271	0	lncRNA	2708-1_{1..654}	"transcript_id ""ENST00000457833.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457833.1"" | genecode_v17"	chr6	169686629	169687282	-	ENSG00000233085.1	ENST00000457833.1	XXyac-YX65C7_A.3	XXyac-YX65C7_A.3-002	NA	NA	NA	inter
CUST_34726_PI429285431	1.9546654	A	1.048892	A	1.87354859769262	0	lncRNA	36172-1_{1..2044}	n341632|BC039358|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4103|NULL|1.8343900|-0.1601876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341632|BC039358|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4103|NULL|1.8343900|-0.1601876	chr8	144425368	144427411	-	NA	NA	NA	NA	RHPN1	NA	chr8:144451025-144452151	inner
CUST_10244_PI429285431	4.8795285	P	4.4932184	P	1.30704616666248	0	lncRNA	11770-1_{1..2460}	lnc-PQLC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PQLC2-1:1	chr1	 19659263	 19661722	+	lnc-PQLC2-1	lnc-PQLC2-1:1	XLOC_000076	linc-C1orf151-2	CAPZB	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80chr1:19665267-19670931"	NA	inter
CUST_14200_PI429285431	0.9052213	A	0.90776867	A	0.998235855601937	0	lncRNA	15853-1_{1..409}	lnc-SLC39A11-1:26	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC39A11-1:26	chr17	 70335643	 70336051	-	lnc-SLC39A11-1	lnc-SLC39A11-1:26	XLOC_012567	linc-ABCA5-5	NA	NA	NA	inter
CUST_29989_PI429285431	13.850111	P	13.723171	P	1.09197513083229	0	lncRNA	31755-1_{1..665}	n334336|S71022|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216389|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216389|2.3227500|-0.1362313	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334336|S71022|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216389|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216389|2.3227500|-0.1362313	chr12	112843089	112843753	-	NA	NA	NA	NA	RPL6	NA	chr12:112842994-112847443	inner
CUST_16755_PI429285431	3.3184352	P	2.4215891	A	1.86199100052199	0	lncRNA	18463-1_{1..1492}	lnc-TMX1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMX1-1:6	chr14	 51831296	 51832787	+	lnc-TMX1-1	lnc-TMX1-1:6	XLOC_010827	linc-FRMD6-1	NA	NA	NA	inter
CUST_6574_PI429285431	1.5200558	A	0.9511532	A	1.48339478271767	0	lncRNA	6522-1_{1..386}	"transcript_id ""ENST00000596766.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596766.1"" | genecode_v17"	chr19	 53638190	 53638575	-	ENSG00000268613.1	ENST00000596766.1	CTD-2620I22.7	CTD-2620I22.7-001	ZNF347	NA	chr19:53641957-53648575	inter
CUST_47093_PI429285431	4.2709374	P	3.6243048	P	1.56550986544235	0	lncRNA	51176-1_{1..2388}	"gi|225543355|ref|NR_027368.1| Homo sapiens processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae) (POP4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225543355|ref|NR_027368.1| Homo sapiens processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae) (POP4), transcript variant 2, non-coding RNA"	Chr19	 30097170	 30099557	+	10775	NR_027368.1	NA	NA	NA	NA	NA	inter
CUST_46264_PI429285431	1.1865964	A	1.6203582	A	0.740328872876351	0	lncRNA	50503-1_{1..1074}	"gi|397139889|ref|XR_158875.1| PREDICTED: Homo sapiens COL4A2 antisense RNA 2 (COL4A2-AS2), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139889|ref|XR_158875.1| PREDICTED: Homo sapiens COL4A2 antisense RNA 2 (COL4A2-AS2), misc_RNA"	Chr13	111108049	111109122	-	100129836	XR_158875.2	NA	NA	NA	NA	NA	inter
CUST_30676_PI429285431	1.6148586	A	2.0609162	A	0.734046010441261	0	lncRNA	32458-1_{1..273}	n336149|X92038|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324516|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324516|-1.3281900|-0.2914279	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336149|X92038|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324516|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324516|-1.3281900|-0.2914279	chr14	 22466241	 22466513	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35703_PI429285431	1.2518277	A	1.1991808	A	1.03716605882619	0	lncRNA	37123-1_{1..1363}	n342867|BC037938|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5371|NULL|-1.2740500|-0.4893509	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342867|BC037938|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5371|NULL|-1.2740500|-0.4893509	chr9	 88462651	 88464013	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014548	0.9642604	A	0.95851725	A	1.00398878233101	0	lncRNA	ENST00000422014	XR_110275	XR_110275	NA	Hs.96459	LOC100506092	NA	ENST00000422014	THC2601613	NA	"PREDICTED: Homo sapiens hypothetical LOC100506092 (LOC100506092), miscRNA [XR_110275]"	chr22:16278111-16278170	hs|22q11.1	Agilent_HUMAN_G3V2	ENST00000422014	ENST00000422014	chr22	 16278111	 16278170	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3377_PI429285431	0.9225193	A	0.91307014	A	1.00657115453131	0	lncRNA	3351-1_{1..447}	"transcript_id ""ENST00000448570.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448570.1"" | genecode_v17"	chr9	 22767174	 22767620	+	ENSG00000224549.1	ENST00000448570.1	RP11-370B11.3	RP11-370B11.3-001	NA	NA	NA	inter
CUST_20772_PI429285431	1.1851612	A	1.1690576	A	1.01122469433783	0	lncRNA	22405-1_{1..1431}	lnc-ZFC3H1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZFC3H1-4:1	chr12	 72192024	 72193454	-	lnc-ZFC3H1-4	lnc-ZFC3H1-4:1	ENSG00000257410.1	RP11-2H8.2	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.62;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.20"	NA	inter
CUST_17728_PI429285431	2.7022057	A	3.0751276	P	0.772216935765645	0	lncRNA	19459-1_{1..500}	lnc-RP11-982M15.6.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-982M15.6.1-2:1	chr14	105123249	105123748	+	lnc-RP11-982M15.6.1-2	lnc-RP11-982M15.6.1-2:1	XLOC_010949	linc-INF2	NA	NA	NA	inter
CUST_36365_PI429285431	0.9287603	A	1.3081685	A	0.768752871863242	0	lncRNA	37586-1_{1..327}	n344883|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_432|NULL|-1.5769500|-0.3283183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344883|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_432|NULL|-1.5769500|-0.3283183	chr6	  3481234	  3481560	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18402_PI429285431	2.983159	P	2.5482907	A	1.35178742612286	0	lncRNA	20127-1_{1..1875}	lnc-SULT1C2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SULT1C2-1:1	chr2	108968826	108970700	+	lnc-SULT1C2-1	lnc-SULT1C2-1:1	ENSG00000237223	SULT1C2P1	NA	NA	NA	inter
CUST_43368_PI429285431	1.1183369	A	1.452571	A	0.793205122719879	0	lncRNA	48184-1_{1..697}	"gi|397138836|ref|XR_158740.1| PREDICTED: Homo sapiens uncharacterized LOC100996583 (LOC100996583), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138836|ref|XR_158740.1| PREDICTED: Homo sapiens uncharacterized LOC100996583 (LOC100996583), misc_RNA"	Chr1	  2512999	  2513695	+	100996583	XR_158740.2	NA	NA	NA	NA	NA	inter
CUST_18987_PI429285431	7.5915756	P	5.943226	P	3.13474828130671	0	lncRNA	20679-1_{1..2769}	lnc-SGCG-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SGCG-6:1	chr13	 23491101	 23493869	+	lnc-SGCG-6	lnc-SGCG-6:1	ENSG00000250943	AL157931.2	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80"	NA	inter
CUST_313_PI429201921	1.2755566	A	0.9191479	A	1.28023503930549	0	lncRNA	212-3_{6001..7384}	TC04002378.hg.1	 TCONS_l2_00021793-XLOC_l2_010989 // Broad TUCP // linc-ZFP42-7 chr4:+:188334717-188336851 // chr4 // 100 // 100 // 0 // --- // 0/// TCONS_l2_00020950-XLOC_l2_010989 // Broad TUCP // linc-ZFP42-7 chr4:+:188329843-188337228 // chr4 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00020949-XLOC_l2_010989 // Broad TUCP // linc-ZFP42-7 chr4:+:188329843-188337228 // chr4 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr4:+:188329843-188337228	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00020949-XLOC_l2_010989	linc-ZFP42-7	chr4	188329843	188337228	+	NA	NA	NA	NA	LOC729041	NA	chr1:46903225-46911374	Unknown
CUST_14715_PI429285431	0.99187547	A	0.94321024	A	1.03430754789817	0	lncRNA	16379-1_{1..417}	lnc-IL12RB2-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-IL12RB2-2:5	chr1	 67997791	 67998207	+	lnc-IL12RB2-2	lnc-IL12RB2-2:5	XLOC_000236	linc-GADD45A	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40"	NA	inter
CUST_46751_PI429285431	1.0077425	A	0.9621449	A	1.03211061653508	0	lncRNA	50901-1_{1..769}	"gi|291045297|ref|NR_033371.1| Homo sapiens CMT1A duplicated region transcript 7 (non-protein coding) (CDRT7), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|291045297|ref|NR_033371.1| Homo sapiens CMT1A duplicated region transcript 7 (non-protein coding) (CDRT7), non-coding RNA"	Chr17	 14934292	 14935060	+	94150	NR_033371.1	NA	NA	NA	NA	NA	inter
CUST_13993_PI429285431	0.9161479	M	1.1814514	A	0.832023683336251	0	lncRNA	15638-1_{1..908}	lnc-ZNF567-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF567-1:1	chr19	 37177639	 37178546	+	lnc-ZNF567-1	lnc-ZNF567-1:1	XLOC_013057	linc-ZNF567	ZNF567	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr19:37180302-37187738"	NA	inter
CUST_19221_PI429285431	1.2286773	A	0.91424584	A	1.24352150741011	0	lncRNA	20891-1_{1..789}	lnc-GNRHR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNRHR2-1:1	chr1	145508147	145508935	-	lnc-GNRHR2-1	lnc-GNRHR2-1:1	ENSG00000234222.1	RP11-315I20.1	LIX1L	"hg19_refFlat_RBM8A:range=chr1:145507667-1455092115'pad=0,hg19_refFlat_RBM8A:range=chr1:145507667-1455092115'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90chr1:145498147-145499091"	NA	inner
CUST_35900_PI429285431	4.9983845	P	3.953602	P	2.06305530994525	0	lncRNA	37277-8_{21001..21686}	n344552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_100|NULL|-1.2931500|-0.3004446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n344552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_100|NULL|-1.2931500|-0.3004446	chr15	 25262369	 25263054	+	NA	NA	NA	NA	SNRPN	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr15:25231369-25375009"	NA	inter
CUST_10079_PI429285431	0.9247716	A	2.2925131	A	0.387497390478737	0	lncRNA	11606-1_{1..836}	lnc-NUDT7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUDT7-1:1	chr16	 77809200	 77810035	+	lnc-NUDT7-1	lnc-NUDT7-1:1	XLOC_011794	linc-VAT1L	NA	"hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00"	NA	inter
CUST_29367_PI429285431	3.8347087	P	3.896182	P	0.958285005652507	0	lncRNA	31119-1_{1..284}	n332628|AB010099|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000058199|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000058199|0.2232820|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332628|AB010099|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000058199|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000058199|0.2232820|-1.0000000	chr20	 60902920	 60903203	-	NA	NA	NA	NA	LAMA5	NA	chr20:60892920-60913435	inner
CUST_20766_PI429285431	0.96781677	A	0.9263825	A	1.02913644474933	0	lncRNA	22399-1_{1..465}	lnc-RBMXL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RBMXL3-1:1	chrX	113995193	113995657	+	lnc-RBMXL3-1	lnc-RBMXL3-1:1	ENSG00000223444.1	HTR2C-IT1	HTR2C	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80chrX:113985193-114005378"	NA	inner
CUST_47214_PI429285431	11.395372	P	11.405572	P	0.992954833126632	0	lncRNA	51289-1_{1..1045}	"gi|390517021|ref|NR_052000.1| Homo sapiens inosine triphosphatase (nucleoside triphosphate pyrophosphatase) (ITPA), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|390517021|ref|NR_052000.1| Homo sapiens inosine triphosphatase (nucleoside triphosphate pyrophosphatase) (ITPA), transcript variant 4, non-coding RNA"	Chr20	  3189514	  3190558	+	3704	NR_052000.1	NA	NA	NA	NA	NA	inter
CUST_42324_PI429285431	0.92823476	A	0.9675056	A	0.973146666255911	0	lncRNA	44964-1_{1..128}	ENST00000364831 ncrna:snoRNA chromosome:GRCh37:3:32079018:32079145:1 gene:ENSG00000201701 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364831 ncrna:snoRNA chromosome:GRCh37:3:32079018:32079145:1 gene:ENSG00000201701 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	 32079018	 32079145	+	ENSG00000201701	ENST00000364831	NA	NA	NA	NA	NA	inter
CUST_6165_PI429285431	1.0008113	A	0.941772	A	1.0417718071985	0	lncRNA	6091-1_{1..3000}	"transcript_id ""ENST00000593234.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000593234.1"" | genecode_v17"	chr18	 39766633	 39769632	+	ENSG00000267586.2	ENST00000593234.1	RP11-21F16.1	RP11-21F16.1-001	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_41331_PI429285431	1.0989422	A	0.9188892	A	1.13292550458964	0	lncRNA	42385-1_{1..65}	ENST00000385280 ncrna:miRNA chromosome:GRCh37:X:49773572:49773636:1 gene:ENSG00000208015 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385280 ncrna:miRNA chromosome:GRCh37:X:49773572:49773636:1 gene:ENSG00000208015 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 49773572	 49773636	+	ENSG00000208015	ENST00000385280	NA	NA	CLCN5	NA	chrX:49763572-49783636	inner
CUST_31228_PI429285431	0.9667675	A	0.9808523	A	0.990284662398056	0	lncRNA	33019-1_{1..620}	n337677|AL512740|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|59|NULL|-0.8434180|-0.1276049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337677|AL512740|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|59|NULL|-0.8434180|-0.1276049	chr15	 29411896	 29412515	+	NA	NA	NA	NA	APBA2	NA	chr15:29401896-29410518	inner
CUST_24579_PI429285431	6.194865	P	6.3087826	P	0.924075349806015	0	lncRNA	26127-1_{1..492}	lnc-CEACAM18-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CEACAM18-2:1	chr19	 51917966	 51918457	+	lnc-CEACAM18-2	lnc-CEACAM18-2:1	ENSG00000254760.1	CTD-2616J11.3	SIGLEC10	"hg19_refFlat_SIGLEC10:range=chr19:51914353-519208355'pad=0,hg19_refFlat_SIGLEC10:range=chr19:51914353-519208355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_SIGLEC11:range=chr19:50453227-504643385'pad=0,hg19_refFlat_SIGLEC11:range=chr19:50453227-504643385'pad=0 3'pad=0 strand=- repeatMasking=none,-101.60chr19:51907966-51921057"	NA	inner
CUST_34676_PI429285431	4.7703633	P	4.8264885	P	0.961843980272517	0	lncRNA	36129-1_{1..1112}	n341581|CR602836|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4052|NULL|-0.5130710|-0.3731246	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341581|CR602836|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4052|NULL|-0.5130710|-0.3731246	chr8	106808458	106809569	-	NA	NA	NA	NA	ZFPM2	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10chr8:106798458-106816767"	NA	inner
CUST_37189_PI429285431	1.11394	A	1.8495868	A	0.600548721834996	0	lncRNA	38301-1_{1..728}	n345620|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1169|NULL|-1.3112100|-0.3381178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345620|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1169|NULL|-1.3112100|-0.3381178	chr4	   299096	   299823	-	NA	NA	NA	NA	ZNF732	NA	chr4:289096-299110	inter
CUST_23616_PI429285431	4.843434	P	5.2729716	P	0.742499726701242	0	lncRNA	25183-1_{1..464}	lnc-RGMA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RGMA-1:1	chr15	 93351679	 93352142	-	lnc-RGMA-1	lnc-RGMA-1:1	ENSG00000258922.1	CTD-2313J17.1	NA	"hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF680:range=chr7:63986777-640233325'pad=0,hg19_refFlat_ZNF680:range=chr7:63986777-640233325'pad=0 3'pad=0 strand=- repeatMasking=none,-64.30"	NA	inter
CUST_13863_PI429285431	0.9177168	A	0.92094827	A	0.99776262234942	0	lncRNA	15507-1_{1..2212}	lnc-PKNOX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PKNOX1-1:1	chr21	 44375437	 44377648	+	lnc-PKNOX1-1	lnc-PKNOX1-1:1	XLOC_013958	linc-PKNOX1	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-22.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30"	NA	inter
CUST_43219_PI429285431	0.9798331	A	1.068682	A	0.940272676377507	0	lncRNA	48033-1_{1..258}	ENST00000602558 havana:sense_intronic chromosome:GRCh37:12:124456004:124456261:-1 gene:ENSG00000270095 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602558 havana:sense_intronic chromosome:GRCh37:12:124456004:124456261:-1 gene:ENSG00000270095 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr12	124456004	124456261	-	ENSG00000270095	ENST00000602558	NA	NA	ZNF664-FAM101A	NA	chr12:124457762-124466261	inner
CUST_18468_PI429285431	1.1539994	A	1.671576	A	0.698544243882188	0	lncRNA	20189-1_{1..969}	lnc-NR1I2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR1I2-1:1	chr3	119855175	119856143	+	lnc-NR1I2-1	lnc-NR1I2-1:1	ENSG00000242622	RP11-18H7.1	NA	NA	NA	inter
CUST_44555_PI429285431	5.556578	P	4.628234	P	1.90309027641876	0	lncRNA	49139-1_{1..2013}	"gi|376319211|ref|NR_046349.1| Homo sapiens peptidylprolyl isomerase domain and WD repeat containing 1 (PPWD1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|376319211|ref|NR_046349.1| Homo sapiens peptidylprolyl isomerase domain and WD repeat containing 1 (PPWD1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_046349.1	NA	NA	NA	NA	NA	Unknown
CUST_51842_PI429285431	1.3218212	A	1.5840313	A	0.833809607104032	0	lncRNA	55397-1_{1..363}	hg19_lincRNAsTranscripts_TCONS_l2_00013121 range=chr19:43057348-43057999 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013121 range=chr19:43057348-43057999 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 43057348	 43057710	-	NA	NA	NA	NA	CEACAM8	NA	chr19:43064619-43067999	inter
CUST_9493_PI429285431	1.0927234	A	0.921015	A	1.12639153729489	0	lncRNA	11000-1_{1..403}	lnc-PHACTR2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHACTR2-2:1	chr6	143845349	143845751	+	lnc-PHACTR2-2	lnc-PHACTR2-2:1	XLOC_005489	linc-PHACTR2-2	NA	NA	NA	inter
CUST_26779_PI429285431	0.9233411	A	0.92524743	A	0.998679505356614	0	lncRNA	28278-1_{1..308}	n323831|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057422|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057422|-1.1764000|-0.3207443	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323831|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057422|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057422|-1.1764000|-0.3207443	chrX	 88565392	 88565699	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35756_PI429285431	8.286391	P	8.365353	P	0.946738567616722	0	lncRNA	37176-1_{1..1232}	n342935|BC014579|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5444|NULL|-1.2163600|-0.4372631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342935|BC014579|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5444|NULL|-1.2163600|-0.4372631	chr10	  5015557	  5016788	+	NA	NA	NA	NA	AKR1C1	NA	chr10:5005557-5020158	inner
CUST_1728_PI429285431	1.4665241	A	1.4763123	A	0.993238300631456	0	lncRNA	1714-1_{1..734}	"transcript_id ""ENST00000513211.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513211.1"" | genecode_v17"	chr4	 31999019	 31999752	+	ENSG00000251129.1	ENST00000513211.1	RP11-734I18.1	RP11-734I18.1-001	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_29058_PI429285431	0.9185312	A	0.9082331	A	1.00716363593426	0	lncRNA	30786-1_{1..1526}	n326548|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026940|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026940|-1.3142300|-0.3679177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326548|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026940|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026940|-1.3142300|-0.3679177	chr1	 83212152	 83213677	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34742_PI429285431	1.3671252	A	0.91829264	A	1.36493529353206	0	lncRNA	36186-1_{1..3000}	n341648|AK127804|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4119|NULL|-1.1378900|-0.4471251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341648|AK127804|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4119|NULL|-1.1378900|-0.4471251	chr9	  3218301	  3221300	-	NA	NA	NA	NA	RFX3	NA	chr9:3224645-3233008	inter
CUST_50411_PI429285431	4.440483	P	3.2550535	P	2.27431092332846	0	lncRNA	54115-1_{1..767}	hg19_lincRNAsTranscripts_TCONS_l2_00030130 range=chrX:2536692-2576947 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030130 range=chrX:2536692-2576947 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	  2536692	  2537458	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00320685	1.3825188	A	0.92938787	A	1.36900805008276	0	lncRNA	AF147305	NA	AF147305	NA	NA	XLOC_011430	NA	NA	THC2630219	NA	"BROAD Institute lincRNA (XLOC_011430), lincRNA [TCONS_00023631]"	chr15:38364243-38364184	hs|15q14	Agilent_HUMAN_G3V2	AF147305	AF147305	chr15	 38364184	 38364243	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36120_PI429285431	1.0546818	A	0.9033473	A	1.11059630411935	0	lncRNA	37410-1_{1..3000}	n344695|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_244|NULL|-1.3549700|-0.3845783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344695|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_244|NULL|-1.3549700|-0.3845783	chr8	135796138	135799137	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49536_PI429285431	8.810222	P	7.7234554	P	2.1239747273902	0	lncRNA	53328-1_{1..775}	hg19_lincRNAsTranscripts_TCONS_l2_00024783 range=chr6:51274335-51275340 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024783 range=chr6:51274335-51275340 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 51274335	 51275109	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49434_PI429285431	0.99117094	A	1.7397034	A	0.59520870858767	0	lncRNA	53236-1_{1..562}	hg19_lincRNAsTranscripts_TCONS_l2_00022667 range=chr5:177378773-177384900 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022667 range=chr5:177378773-177384900 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	177378773	177379334	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45702_PI429285431	16.595177	P	16.05227	P	1.45690519484619	0	lncRNA	50071-1_{1..673}	"gi|388240827|ref|NR_049759.1| Homo sapiens interferon induced transmembrane protein 3 (IFITM3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388240827|ref|NR_049759.1| Homo sapiens interferon induced transmembrane protein 3 (IFITM3), transcript variant 2, non-coding RNA"	Chr11	   319673	   320345	-	10410	NR_049759.1	NA	NA	NA	NA	NA	inter
CUST_10844_PI429285431	1.5004466	A	0.9059301	A	1.50996645563884	0	lncRNA	12382-1_{1..555}	lnc-SIM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIM2-1:1	chr21	 37952833	 37953387	+	lnc-SIM2-1	lnc-SIM2-1:1	XLOC_013934	linc-SIM2	CLDN14	NA	chr21:37942833-37948867	inter
CUST_42214_PI429285431	0.9116926	A	1.437696	A	0.694475931208912	0	lncRNA	44312-1_{1..74}	ENST00000578957 ncrna:miRNA chromosome:GRCh37:12:81552167:81552240:1 gene:ENSG00000265227 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578957 ncrna:miRNA chromosome:GRCh37:12:81552167:81552240:1 gene:ENSG00000265227 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 81552167	 81552240	+	ENSG00000265227	ENST00000578957	NA	NA	ACSS3	NA	chr12:81542167-81562240	inner
CUST_6778_PI429285431	3.0730524	P	3.5463855	P	0.720298547412879	0	lncRNA	6725-1_{1..530}	"transcript_id ""ENST00000441820.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441820.1"" | genecode_v17"	chr21	 17909601	 17910130	+	ENSG00000215386.6	ENST00000441820.1	LINC00478	LINC00478-003	NA	NA	NA	inter
CUST_27962_PI429285431	0.9190602	A	0.9074268	A	1.00809625726691	0	lncRNA	29566-1_{1..535}	n325211|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329247|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329247|-1.0864600|-0.4199015	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325211|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329247|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329247|-1.0864600|-0.4199015	chr2	104648328	104648862	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33510_PI429285431	0.9297936	A	0.92224324	A	1.00524722948553	0	lncRNA	35082-1_{1..3000}	n340249|AL832220|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2710|NULL|-1.0433800|-0.2808823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340249|AL832220|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2710|NULL|-1.0433800|-0.2808823	chr4	146973755	146976754	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17875_PI429285431	2.320012	A	2.3169177	A	1.00214710706104	0	lncRNA	19612-1_{1..1289}	lnc-RP11-680F20.4.1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-680F20.4.1-2:4	chr11	125795899	125797187	-	lnc-RP11-680F20.4.1-2	lnc-RP11-680F20.4.1-2:4	XLOC_009594	linc-PUS3-2	DDX25	NA	chr11:125785899-125793005	inter
CUST_45942_PI429285431	1.4159124	A	0.91303325	A	1.41703869068778	0	lncRNA	50244-1_{1..3000}	"gi|410170633|ref|XR_110540.3| PREDICTED: Homo sapiens uncharacterized LOC100130507 (LOC100130507), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170633|ref|XR_110540.3| PREDICTED: Homo sapiens uncharacterized LOC100130507 (LOC100130507), misc_RNA"	NA	NA	NA	NA	NA	XR_110540.3	NA	NA	NA	NA	NA	Unknown
CUST_3225_PI429285431	1.0897266	A	0.9192539	A	1.12542717125454	0	lncRNA	3204-1_{1..768}	"transcript_id ""ENST00000518042.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518042.1"" | genecode_v17"	chr8	 93415773	 93416540	-	ENSG00000253682.1	ENST00000518042.1	RP11-700E23.2	RP11-700E23.2-001	NA	NA	NA	inter
CUST_17774_PI429285431	3.7760243	P	4.035538	P	0.835369456201926	0	lncRNA	19505-1_{1..338}	lnc-RP11-295D22.1.1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-295D22.1.1-5:2	chr9	122813864	122814201	+	lnc-RP11-295D22.1.1-5	lnc-RP11-295D22.1.1-5:2	XLOC_007546	linc-CEP110-5	NA	NA	NA	inter
CUST_10665_PI429285431	2.4150355	A	2.2404773	A	1.1286187322302	0	lncRNA	12198-1_{1..221}	lnc-PDCD2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDCD2-2:2	chr6	171046589	171046809	-	lnc-PDCD2-2	lnc-PDCD2-2:2	XLOC_005951	linc-PDCD2-3	NA	NA	NA	inter
CUST_41441_PI429285431	7.129217	P	7.5856752	P	0.728773194254515	0	lncRNA	42615-1_{1..84}	ENST00000578301 ncrna:miRNA chromosome:GRCh37:20:43036760:43036843:1 gene:ENSG00000266151 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578301 ncrna:miRNA chromosome:GRCh37:20:43036760:43036843:1 gene:ENSG00000266151 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 43036760	 43036843	+	ENSG00000266151	ENST00000578301	NA	NA	HNF4A	NA	chr20:43026760-43046843	inner
CUST_35858_PI429285431	5.0409846	P	5.131077	P	0.939462577715799	0	lncRNA	37253-1_{1..1982}	n344524|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_72|NULL|-1.3313700|-0.2705586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344524|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_72|NULL|-1.3313700|-0.2705586	chr2	 42158745	 42160726	+	NA	NA	NA	NA	LOC400950	"hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90chr2:42162508-42180943"	NA	inner
CUST_14665_PI429285431	6.615893	P	7.739376	P	0.45898439200001	0	lncRNA	16334-1_{1..1165}	lnc-CTC-236F12.4.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTC-236F12.4.1-1:5	chr5	 55748420	 55749584	-	lnc-CTC-236F12.4.1-1	lnc-CTC-236F12.4.1-1:5	XLOC_004829	linc-ANKRD55-6	NA	NA	NA	inter
CUST_50764_PI429285431	11.100997	P	11.025573	P	1.0536706583652	0	lncRNA	54428-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00004567 range=chr11:65266197-65273969 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004567 range=chr11:65266197-65273969 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65266197	 65269196	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25290_PI429285431	2.9360344	A	2.9934576	A	0.960978993570216	0	lncRNA	26821-1_{1..660}	lnc-TBC1D3F-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBC1D3F-1:1	chr17	 36108520	 36109179	+	lnc-TBC1D3F-1	lnc-TBC1D3F-1:1	ENSG00000259549.1	RP11-115K3.1	HNF1B	NA	chr17:36098520-36105096	inter
CUST_43493_PI429285431	0.91603374	A	0.90883267	A	1.00500387916324	0	lncRNA	48285-1_{1..2247}	"gi|338827688|ref|NR_040077.1| Homo sapiens GNG12 antisense RNA 1 (GNG12-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338827688|ref|NR_040077.1| Homo sapiens GNG12 antisense RNA 1 (GNG12-AS1), non-coding RNA"	Chr1	 68297971	 68300217	+	100289178	NR_040077.1	NA	NA	NA	"hg19_refFlat_WLS:range=chr1:68564315-686979825'pad=0,hg19_refFlat_WLS:range=chr1:68564315-686979825'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_9291_PI429285431	0.9292953	A	0.9140111	A	1.01065051737839	0	lncRNA	10797-1_{1..942}	lnc-SESN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SESN3-1:1	chr11	 94820982	 94821923	-	lnc-SESN3-1	lnc-SESN3-1:1	XLOC_009526	linc-CWC15	ENDOD1	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.06;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50chr11:94822974-94831880"	NA	inter
CUST_35712_PI429285431	1.0423987	A	0.9021945	A	1.10206109128583	0	lncRNA	37132-1_{1..2688}	n342879|AK025650|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5384|NULL|-1.1974400|-0.3600045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342879|AK025650|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5384|NULL|-1.1974400|-0.3600045	chr9	129986889	129989576	+	NA	NA	NA	NA	RALGPS1	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40chr9:129976889-129985445"	NA	inter
CUST_44577_PI429285431	0.9137089	A	0.9096225	A	1.00283649189074	0	lncRNA	49158-2_{3001..3562}	"gi|211971063|ref|NR_024384.1| Homo sapiens long intergenic non-protein coding RNA 461 (LINC00461), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|211971063|ref|NR_024384.1| Homo sapiens long intergenic non-protein coding RNA 461 (LINC00461), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NR_024384.1	NA	NA	NA	NA	NA	Unknown
CUST_27588_PI429285431	0.9091462	A	1.0213057	A	0.925202134833775	0	lncRNA	29167-1_{1..1412}	n324791|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141409|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141409|-1.1807900|-0.3289748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324791|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141409|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141409|-1.1807900|-0.3289748	chr21	 39282502	 39283913	-	NA	NA	NA	NA	KCNJ6	NA	chr21:39272502-39288696	inner
CUST_400_PI429201921	0.91408116	A	1.002739	A	0.940397207472887	0	lncRNA	249-2_{3001..6000}	TC13001330.hg.1	TCONS_l2_00007047-XLOC_l2_003883 // Broad TUCP // linc-RASA3-5 chr13:-:19400928-19410602 // chr13 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr13:-:19400928-19410602	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00007047-XLOC_l2_003883	linc-RASA3-5	chr13	 19400928	 19410602	-	NA	NA	NA	NA	INADL	NA	chr1:62208149-62218096	Unknown
CUST_29535_PI429285431	3.8485434	P	4.3219357	P	0.720268991063183	0	lncRNA	31294-1_{1..357}	n333001|AF147319|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071392|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071392|-1.1788900|-0.3486581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333001|AF147319|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071392|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071392|-1.1788900|-0.3486581	chr13	103492684	103493040	+	NA	NA	NA	NA	BIVM-ERCC5	"hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00chr13:103482684-103503041"	NA	inner
CUST_26403_PI429285431	1.0063694	A	0.90881634	A	1.06995717947844	0	lncRNA	27910-1_{1..473}	lnc-AC114546.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC114546.1-1:1	chr15	 35295327	 35295799	+	lnc-AC114546.1-1	lnc-AC114546.1-1:1	ENSG00000259181.1	RP11-463I20.3	NA	NA	NA	inter
CUST_16404_PI429285431	7.286421	P	7.918606	P	0.645198504678983	0	lncRNA	18100-1_{1..281}	lnc-TPST1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPST1-1:5	chr7	 65960242	 65960522	+	lnc-TPST1-1	lnc-TPST1-1:5	XLOC_006133	linc-KCTD7-2	NA	NA	NA	inter
CUST_4337_PI429285431	0.9303397	A	0.9100687	A	1.01414996275481	0	lncRNA	4292-1_{1..1080}	"transcript_id ""ENST00000549161.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549161.1"" | genecode_v17"	chr12	 81664454	 81665533	+	ENSG00000257467.1	ENST00000549161.1	RP11-121G22.3	RP11-121G22.3-001	PPFIA2	"hg19_refFlat_PPFIA2:range=chr12:81653411-821480005'pad=0,hg19_refFlat_PPFIA2:range=chr12:81653411-821480005'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PPFIA2:range=chr12:81655761-819918115'pad=0,hg19_refFlat_PPFIA2:range=chr12:81655761-819918115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.66;hg19_refFlat_PPFIA2:range=chr12:81655761-821480005'pad=0,hg19_refFlat_PPFIA2:range=chr12:81655761-821480005'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40chr12:81654454-81716090"	NA	inner
CUST_36182_PI429285431	1.2171607	A	1.7879897	A	0.673229826607407	0	lncRNA	37448-5_{12001..15000}	n344736|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_285|NULL|-1.6131600|-0.3223694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344736|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_285|NULL|-1.6131600|-0.3223694	chrX	 45616650	 45619649	-	NA	NA	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-22.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10"	NA	inter
CUST_18852_PI429285431	3.8651588	P	3.157318	P	1.63335773283172	0	lncRNA	20546-1_{1..544}	lnc-NKAIN3-3:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKAIN3-3:12	chr8	 64098706	 64099249	+	lnc-NKAIN3-3	lnc-NKAIN3-3:12	ENSG00000185728	YTHDF3	YTHDF3	NA	chr8:64088706-64109029	inner
CUST_1559_PI429285431	0.92986333	A	0.91984046	A	1.00697151272056	0	lncRNA	1547-1_{1..470}	"transcript_id ""ENST00000447709.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447709.1"" | genecode_v17"	chr3	172871527	172871996	+	ENSG00000237473.1	ENST00000447709.1	RP11-324C10.1	RP11-324C10.1-001	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40"	NA	inter
CUST_22281_PI429285431	1.0577135	A	1.3551254	A	0.813710831500945	0	lncRNA	23881-1_{1..759}	lnc-PTPN20B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPN20B-1:2	chr10	 48942569	 48943327	-	lnc-PTPN20B-1	lnc-PTPN20B-1:2	ENSG00000204164.5	RP11-508M1.3	NA	NA	NA	inter
CUST_42900_PI429285431	6.934786	P	6.876796	P	1.04101438189727	0	lncRNA	45996-1_{1..128}	ENST00000390971 ncrna:snoRNA chromosome:GRCh37:8:134656841:134656968:-1 gene:ENSG00000212273 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390971 ncrna:snoRNA chromosome:GRCh37:8:134656841:134656968:-1 gene:ENSG00000212273 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	134656841	134656968	-	ENSG00000212273	ENST00000390971	NA	NA	NA	NA	NA	inter
CUST_18753_PI429285431	3.00399	P	2.648948	A	1.2790228158799	0	lncRNA	20449-1_{1..2078}	lnc-TCL1B-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCL1B-1:14	chr14	 96142787	 96144864	+	lnc-TCL1B-1	lnc-TCL1B-1:14	ENSG00000187621	TCL6	TCL1B	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80chr14:96152754-96154437"	NA	inter
CUST_24559_PI429285431	0.93771446	A	0.91677314	A	1.01462127716101	0	lncRNA	26108-1_{1..535}	lnc-TNPO3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNPO3-2:1	chr7	128853258	128853792	-	lnc-TNPO3-2	lnc-TNPO3-2:1	ENSG00000243230.1	RP11-286H14.8	SMO	NA	chr7:128843258-128853386	inner
CUST_7824_PI429285431	3.7093735	P	3.2824411	A	1.34437199977488	0	lncRNA	9448-1_{1..761}	lnc-ZFC3H1-8:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZFC3H1-8:4	chr12	 73522872	 73523632	-	lnc-ZFC3H1-8	lnc-ZFC3H1-8:4	ENSG00000258294	RP11-314D7.1	NA	NA	NA	inter
CUST_25463_PI429285431	7.58308	P	7.2808948	P	1.23301059793298	0	lncRNA	26993-1_{1..431}	lnc-GSDMD-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GSDMD-3:1	chr8	144662678	144663108	+	lnc-GSDMD-3	lnc-GSDMD-3:1	ENSG00000254741.1	RP11-661A12.7	C8orf73	"hg19_refFlat_EEF1D:range=chr8:144661962-1446722515'pad=0,hg19_refFlat_EEF1D:range=chr8:144661962-1446722515'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_EEF1D:range=chr8:144661962-1446690155'pad=0,hg19_refFlat_EEF1D:range=chr8:144661962-1446690155'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30chr8:144652678-144654928"	NA	inner
CUST_7289_PI429285431	0.92257386	A	0.9109694	A	1.008076035382	0	lncRNA	8234-1_{1..314}	"transcript_id ""ENST00000411392.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411392.1"" | genecode_v17"	chr11	111553835	111554148	+	ENSG00000223324.1	ENST00000411392.1	RN7SKP273	RN7SKP273-201	SIK2	NA	chr11:111543835-111564148	inner
CUST_18015_PI429285431	0.9144389	A	0.9036658	A	1.00749529403107	0	lncRNA	19748-1_{1..1107}	lnc-GALNT5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GALNT5-1:2	chr2	157905213	157906319	+	lnc-GALNT5-1	lnc-GALNT5-1:2	XLOC_001719	linc-GALNT5-1	NA	NA	NA	inter
LNCA_21_P0010421	9.312704	P	9.563154	P	0.840634166914878	0	lncRNA	TCONS_00029614	NA	NA	NA	NA	XLOC_014268	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014268), lincRNA [TCONS_00029614]"	chr22:46533674-46539396	hs|22q13.31	Agilent_HUMAN_G3V2	TCONS_00029614	TCONS_00029614	chr22	 46533674	 46539396	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41616_PI429285431	1.9759963	A	1.3571811	A	1.53561355483655	0	lncRNA	42987-1_{1..87}	ENST00000517199 ncrna:miRNA chromosome:GRCh37:2:207974711:207974797:-1 gene:ENSG00000253008 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517199 ncrna:miRNA chromosome:GRCh37:2:207974711:207974797:-1 gene:ENSG00000253008 gene_biotype:miRNA transcript_biotype:miRNA	chr2	207974711	207974797	-	ENSG00000253008	ENST00000517199	NA	NA	KLF7	NA	chr2:207964711-207984797	inter
CUST_13955_PI429285431	7.10195	P	7.3131223	P	0.863835014063633	0	lncRNA	15600-1_{1..589}	lnc-TMEM18-11:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM18-11:1	chr2	   916699	   917287	-	lnc-TMEM18-11	lnc-TMEM18-11:1	XLOC_001938	linc-TMEM18-2	NA	NA	NA	inter
CUST_39058_PI429285431	2.884746	A	2.2054229	A	1.60138822142259	0	lncRNA	40034-2_{3001..4791}	n385512|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aaa.2||-0.8727500|-0.3018033	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385512|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aaa.2||-0.8727500|-0.3018033	chr9	 37508586	 37510376	+	NA	NA	NA	NA	POLR1E	"hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70chr9:37495586-37503693"	NA	inter
CUST_114_PI429285431	0.90881515	A	0.89889395	A	1.00690055164878	0	lncRNA	105-2_{3001..4860}	"transcript_id ""ENST00000416385.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416385.1"" | genecode_v17"	chr1	   680193	   682052	-	ENSG00000235373.1	ENST00000416385.1	RP11-206L10.3	RP11-206L10.3-001	NA	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-23.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90"	NA	inter
CUST_17604_PI429285431	0.95342916	A	0.91913325	A	1.02405692236686	0	lncRNA	19330-1_{1..3000}	lnc-SOX11-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SOX11-3:2	chr2	  6108718	  6111717	+	lnc-SOX11-3	lnc-SOX11-3:2	XLOC_001327	linc-RSAD2-2	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-58.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.50;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00"	NA	inter
LNCA_21_P0011122	0.9248249	A	1.1028556	A	0.883908721623208	0	lncRNA	TCONS_l2_00006715	NA	NA	NA	NA	XLOC_l2_003626	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003626), lincRNA [TCONS_l2_00006715]"	chr13:21869248-21869307	hs|13q12.11	Agilent_HUMAN_G3V2	TCONS_l2_00006715	TCONS_l2_00006715	chr13	 21869248	 21869307	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46582_PI429285431	4.0527654	P	5.580327	P	0.346863129554326	0	lncRNA	50766-1_{1..776}	"gi|310123431|ref|XR_109247.1| PREDICTED: Homo sapiens uncharacterized LOC100507458, transcript variant 2 (LOC100507458), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310123431|ref|XR_109247.1| PREDICTED: Homo sapiens uncharacterized LOC100507458, transcript variant 2 (LOC100507458), misc_RNA"	NA	NA	NA	NA	NA	XR_109247.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10"	NA	Unknown
CUST_20083_PI429285431	1.6119268	A	1.4403069	A	1.1263224425862	0	lncRNA	21731-1_{1..1070}	lnc-C1QTNF9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1QTNF9-2:1	chr13	 24994273	 24995342	+	lnc-C1QTNF9-2	lnc-C1QTNF9-2:1	ENSG00000238179.1	RP11-169O17.5	PARP4	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90chr13:24995069-25005180"	NA	inner
CUST_6193_PI429285431	2.3508854	A	2.255278	A	1.06851517705358	0	lncRNA	6119-1_{1..492}	"transcript_id ""ENST00000588803.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588803.1"" | genecode_v17"	chr18	 53665570	 53666061	+	ENSG00000267327.1	ENST00000588803.1	CTD-2008L17.1	CTD-2008L17.1-001	NA	NA	NA	inter
CUST_6539_PI429285431	0.9192607	A	0.9186264	A	1.00043975992269	0	lncRNA	6482-1_{1..518}	"transcript_id ""ENST00000601033.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601033.1"" | genecode_v17"	chr19	 46531127	 46531644	+	ENSG00000268401.1	ENST00000601033.1	CTC-344H19.4	CTC-344H19.4-002	CCDC61	NA	chr19:46521127-46521874	inter
CUST_28109_PI429285431	1.0430912	A	0.91259944	A	1.09466676804182	0	lncRNA	29731-1_{1..379}	n325381|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324012|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324012|-1.0116100|-0.3058082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325381|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324012|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324012|-1.0116100|-0.3058082	chr2	 21472452	 21472830	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18449_PI429285431	0.91146445	A	0.91348904	A	0.998597645369223	0	lncRNA	20173-1_{1..2356}	lnc-AC018816.3.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC018816.3.1-3:2	chr3	  5021480	  5023835	-	lnc-AC018816.3.1-3	lnc-AC018816.3.1-3:2	ENSG00000235831	AC018816.4	BHLHE40	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90chr3:5021097-5026866"	NA	inner
CUST_42279_PI429285431	7.1898394	P	7.100835	P	1.06363591681568	0	lncRNA	44891-1_{1..121}	ENST00000517238 ncrna:snoRNA chromosome:GRCh37:1:150573015:150573135:-1 gene:ENSG00000253047 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517238 ncrna:snoRNA chromosome:GRCh37:1:150573015:150573135:-1 gene:ENSG00000253047 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	150573015	150573135	-	ENSG00000253047	ENST00000517238	NA	NA	NA	NA	NA	inter
CUST_25507_PI429285431	1.694374	A	2.4739256	A	0.582547825155693	0	lncRNA	27037-1_{1..336}	lnc-SPATA12-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPATA12-1:2	chr3	 56974919	 56975254	+	lnc-SPATA12-1	lnc-SPATA12-1:2	ENSG00000240198.1	ARHGEF3-AS1	ARHGEF3	NA	chr3:56964919-56985076	inner
LNCA_19_P00804359	4.40661	P	4.2101874	P	1.14585349681287	0	lncRNA	GU369676	NA	GU369676	NA	Hs.117020	XLOC_009194	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009194), lincRNA [TCONS_00019370]"	chr11:69307624-69307683	hs|11q13.3	Agilent_HUMAN_G3V2	GU369676	GU369676	chr11	 69307624	 69307683	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45629_PI429285431	2.1844325	A	2.4374373	A	0.839146845171002	0	lncRNA	50012-1_{1..3000}	"gi|218082851|ref|NR_024585.1| Homo sapiens uncharacterized LOC100128292 (LOC100128292), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|218082851|ref|NR_024585.1| Homo sapiens uncharacterized LOC100128292 (LOC100128292), non-coding RNA"	Chr10	 79686570	 79689569	+	100128292	NR_024585.1	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
CUST_10627_PI429285431	1.0377381	A	0.92238986	A	1.08323648729953	0	lncRNA	12158-1_{1..484}	lnc-CEP57-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEP57-1:2	chr11	 95432555	 95433038	+	lnc-CEP57-1	lnc-CEP57-1:2	XLOC_009257	linc-CEP57-1	NA	NA	NA	inter
CUST_14680_PI429285431	7.03083	P	7.4059277	P	0.771053194843775	0	lncRNA	16348-1_{1..615}	lnc-INSC-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INSC-2:3	chr11	 15726721	 15727335	+	lnc-INSC-2	lnc-INSC-2:3	XLOC_009074	linc-C11orf58-3	NA	NA	NA	inter
CUST_15324_PI429285431	0.98807114	A	1.5307012	A	0.686518232033151	0	lncRNA	17003-1_{1..1516}	lnc-TNFSF15-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFSF15-2:4	chr9	117419946	117421461	-	lnc-TNFSF15-2	lnc-TNFSF15-2:4	XLOC_007832	linc-DFNB31-1	LOC100505478	NA	chr9:117428714-117430809	inter
CUST_51432_PI429285431	1.2253604	A	0.9139442	A	1.24092523794423	0	lncRNA	55010-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00010039 range=chr16:20737620-20743136 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010039 range=chr16:20737620-20743136 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 20737620	 20740619	-	NA	NA	NA	NA	THUMPD1	"hg19_refFlat_ACSM4:range=chr12:7456928-74809695'pad=0,hg19_refFlat_ACSM4:range=chr12:7456928-74809695'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00chr16:20744986-20753136"	NA	inter
CUST_22175_PI429285431	4.078269	P	3.8011584	P	1.21176555333509	0	lncRNA	23777-1_{1..310}	lnc-BLID-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BLID-2:1	chr11	122293400	122293709	-	lnc-BLID-2	lnc-BLID-2:1	ENSG00000255090.1	RP11-820L6.1	NA	NA	NA	inter
CUST_17526_PI429285431	0.9178815	A	1.4107217	A	0.710624729522488	0	lncRNA	19251-1_{1..305}	lnc-FRMD4A-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRMD4A-1:6	chr10	 13569825	 13570129	-	lnc-FRMD4A-1	lnc-FRMD4A-1:6	XLOC_008735	linc-BEND7-1	NA	NA	NA	inter
CUST_51371_PI429285431	0.91366214	A	0.9078409	A	1.00404312756938	0	lncRNA	54967-1_{1..1104}	hg19_lincRNAsTranscripts_TCONS_l2_00008829 range=chr15:92829081-92830420 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008829 range=chr15:92829081-92830420 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 92829081	 92830184	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12427_PI429285431	3.1118019	A	4.05509	P	0.520046271885292	0	lncRNA	14040-1_{1..1884}	lnc-TCF12-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TCF12-1:7	chr15	 57599740	 57601623	+	lnc-TCF12-1	lnc-TCF12-1:7	XLOC_011264	linc-CGNL1-2	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_24880_PI429285431	0.9169476	A	0.9108616	A	1.00422740411065	0	lncRNA	26421-1_{1..803}	lnc-CTNNA1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTNNA1-2:3	chr5	138349248	138350050	+	lnc-CTNNA1-2	lnc-CTNNA1-2:3	ENSG00000249593.2	CTB-46B19.2	SIL1	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr5:138339248-138359913"	NA	inner
CUST_28486_PI429285431	5.6439705	P	5.631936	P	1.00837656849772	0	lncRNA	30153-1_{1..419}	n325828|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316962|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316962|-0.1974010|-0.1921305	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325828|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316962|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316962|-0.1974010|-0.1921305	chr11	 63934123	 63934541	-	NA	NA	NA	NA	STIP1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-95.30chr11:63953587-63954263"	NA	inter
CUST_40025_PI429285431	5.5994473	P	5.6877604	P	0.940621947463671	0	lncRNA	40883-1_{1..1616}	n407188|NR_026649|lncRNA|Homosapiens||RefGeneNoncode|NR_026649||4.4306500|-0.2260458	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407188|NR_026649|lncRNA|Homosapiens||RefGeneNoncode|NR_026649||4.4306500|-0.2260458	chr6	  3118925	  3120540	+	NA	NA	NA	NA	BPHL	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40chr6:3118926-3153432"	NA	inter
CUST_40205_PI429285431	1.9922557	A	3.254579	P	0.416872092708098	0	lncRNA	41035-2_{3001..3112}	n408036|NR_027816|lncRNA|Homosapiens||RefGeneNoncode|NR_027816||7.6441700|-0.1432517	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408036|NR_027816|lncRNA|Homosapiens||RefGeneNoncode|NR_027816||7.6441700|-0.1432517	chr7	  4172316	  4172427	+	NA	NA	NA	NA	SDK1	NA	chr7:4159316-4308632	inner
CUST_9445_PI429285431	0.89959687	A	0.9003272	A	0.999493901930476	0	lncRNA	10951-1_{1..1274}	lnc-MBIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBIP-1:1	chr14	 36741625	 36742898	-	lnc-MBIP-1	lnc-MBIP-1:1	XLOC_010997	linc-RALGAPA1-3	NA	NA	NA	inter
CUST_10597_PI429285431	1.113279	A	0.9102627	A	1.15110249675453	0	lncRNA	12127-1_{1..3000}	lnc-RP11-1220K2.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-1220K2.2.1-1:1	chr7	141920364	141923363	+	lnc-RP11-1220K2.2.1-1	lnc-RP11-1220K2.2.1-1:1	XLOC_006277	linc-MTRNR2L6-3	NA	NA	NA	inter
CUST_2380_PI429285431	0.9159646	A	0.91262907	A	1.00231468797869	0	lncRNA	2373-1_{1..646}	"transcript_id ""ENST00000506911.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506911.1"" | genecode_v17"	chr5	137374888	137375533	+	ENSG00000250260.1	ENST00000506911.1	RP11-325L7.2	RP11-325L7.2-001	FAM13B	NA	chr5:137364888-137368802	inter
CUST_38244_PI429285431	4.333195	P	4.302013	P	1.02184898368057	0	lncRNA	39304-2_{3001..4228}	n381744|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001oxi.1||1.5442700|-0.2401866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381744|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001oxi.1||1.5442700|-0.2401866	chr11	 76095356	 76096583	+	NA	NA	NA	NA	PRKRIR	NA	chr11:76082356-76091880	inter
CUST_39619_PI429285431	13.029397	P	13.072809	P	0.970357318816366	0	lncRNA	40558-1_{1..381}	n387706|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011lsc.1||1.2215000|-0.1005981	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387706|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011lsc.1||1.2215000|-0.1005981	chr9	 74622671	 74623051	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20881_PI429285431	0.91608864	A	0.93205094	A	0.988996760159169	0	lncRNA	22513-1_{1..594}	lnc-CLMN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLMN-1:1	chr14	 95651822	 95652415	-	lnc-CLMN-1	lnc-CLMN-1:1	ENSG00000259143.1	CTD-2240H23.2	CLMN	NA	chr14:95648276-95662191	inner
CUST_3990_PI429285431	0.91382605	A	1.0724555	A	0.895875742364241	0	lncRNA	3951-1_{1..611}	"transcript_id ""ENST00000602944.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602944.1"" | genecode_v17"	chr11	 67229181	 67229791	-	ENSG00000270169.1	ENST00000602944.1	CTC-1337H24.2	CTC-1337H24.2-001	CABP4	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00chr11:67222818-67229245"	NA	inner
LNCA_21_P0010446	3.1076996	P	3.2133095	P	0.929411950215632	0	lncRNA	TCONS_00029709	NA	NA	NA	NA	XLOC_014393	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014393), lincRNA [TCONS_00029709]"	chr22:45063538-45063479	hs|22q13.31	Agilent_HUMAN_G3V2	TCONS_00029709	TCONS_00029709	chr22	 45063479	 45063538	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29938_PI429285431	0.9298773	A	0.92181	A	1.00560748969227	0	lncRNA	31702-1_{1..269}	n334126|M62377|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196010|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196010|1.3321900|-0.2410568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334126|M62377|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196010|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196010|1.3321900|-0.2410568	chr7	142223824	142224092	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25387_PI429285431	0.92928374	A	0.92280406	A	1.00450147325108	0	lncRNA	26918-1_{1..460}	lnc-TIMD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMD4-1:1	chr5	156166665	156167124	-	lnc-TIMD4-1	lnc-TIMD4-1:1	ENSG00000254163.1	CTC-340I23.2	SGCD	NA	chr5:156156665-156176823	inner
CUST_31904_PI429285431	4.7637258	P	4.71812	P	1.03211648286917	0	lncRNA	33635-1_{1..2027}	n338459|AK057309|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|856|NULL|1.4843800|-0.2305714	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338459|AK057309|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|856|NULL|1.4843800|-0.2305714	chr14	 94362107	 94364133	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80"	NA	inter
CUST_25360_PI429285431	4.7946386	P	4.416441	P	1.29971706716047	0	lncRNA	26890-1_{1..813}	lnc-GS1-211B7.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GS1-211B7.1.1-1:2	chr8	 30608913	 30609725	+	lnc-GS1-211B7.1.1-1	lnc-GS1-211B7.1.1-1:2	ENSG00000104691.10	UBXN8	UBXN8	NA	chr8:30601690-30619035	inner
LNCA_21_P0014418	1.4882272	A	1.1027932	A	1.30625268259738	0	lncRNA	XR_109697	XR_109697	XR_109697	NA	NA	LOC100506285	uncharacterized LOC100506285	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506285 (LOC100506285), miscRNA [XR_109697]"	chr22:18640364-18632970	hs|22q11.21	Agilent_HUMAN_G3V2	XR_109697	XR_109697	chr22	 18632970	 18640364	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50211_PI429285431	1.2727096	A	0.97360724	A	1.23037863768976	0	lncRNA	53937-1_{1..308}	hg19_lincRNAsTranscripts_TCONS_l2_00028759 range=chr9:66333367-66346175 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028759 range=chr9:66333367-66346175 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 66333367	 66333674	+	NA	NA	NA	NA	NA	"hg19_refFlat_CNN2:range=chr19:1026661-10378995'pad=0,hg19_refFlat_CNN2:range=chr19:1026661-10378995'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00"	NA	inter
CUST_49794_PI429285431	2.0587358	A	3.2460153	P	0.439130151157273	0	lncRNA	53551-1_{1..1109}	hg19_lincRNAsTranscripts_TCONS_l2_00025911 range=chr7:62837289-62838584 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025911 range=chr7:62837289-62838584 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 62837289	 62838397	+	NA	NA	NA	NA	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40"	NA	inter
CUST_3553_PI429285431	7.119026	P	7.3335066	P	0.861856389957932	0	lncRNA	3523-1_{1..1403}	"transcript_id ""ENST00000454968.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454968.1"" | genecode_v17"	chr9	132245730	132247132	+	ENSG00000204054.6	ENST00000454968.1	RP11-492E3.1	RP11-492E3.1-001	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90"	NA	inter
CUST_8662_PI429285431	10.06047	P	10.239042	P	0.883577140776607	0	lncRNA	10213-1_{1..2351}	lnc-WBP4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WBP4-1:1	chr13	 41768550	 41770900	+	lnc-WBP4-1	lnc-WBP4-1:1	ENSG00000247476	ENST00000501885	KBTBD7	"hg19_refFlat_KBTBD7:range=chr13:41766339-417683935'pad=0,hg19_refFlat_KBTBD7:range=chr13:41766339-417683935'pad=0 3'pad=0 strand=- repeatMasking=none,-101.60;hg19_refFlat_KBTBD6:range=chr13:41704623-417066475'pad=0,hg19_refFlat_KBTBD6:range=chr13:41704623-417066475'pad=0 3'pad=0 strand=- repeatMasking=none,-101.60chr13:41765711-41768702"	NA	inner
CUST_42228_PI429285431	2.47093	A	2.1879551	A	1.21670119028963	0	lncRNA	44336-1_{1..76}	ENST00000390201 ncrna:miRNA chromosome:GRCh37:3:48616335:48616410:-1 gene:ENSG00000211535 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390201 ncrna:miRNA chromosome:GRCh37:3:48616335:48616410:-1 gene:ENSG00000211535 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 48616335	 48616410	-	ENSG00000211535	ENST00000390201	NA	NA	COL7A1	NA	chr3:48606335-48626410	inner
CUST_28979_PI429285431	0.90670556	A	0.9136007	A	0.995232056054214	0	lncRNA	30700-1_{1..898}	n326460|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000034533|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000034533|-1.1724100|-0.2801288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326460|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000034533|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000034533|-1.1724100|-0.2801288	chr1	119604410	119605307	-	NA	NA	NA	NA	WARS2	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40chr1:119594410-119681449"	NA	inner
CUST_42648_PI429285431	0.90898097	A	0.91142637	A	0.998306413623327	0	lncRNA	45540-1_{1..127}	ENST00000391318 ncrna:snoRNA chromosome:GRCh37:4:80764256:80764382:1 gene:ENSG00000212620 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391318 ncrna:snoRNA chromosome:GRCh37:4:80764256:80764382:1 gene:ENSG00000212620 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	 80764256	 80764382	+	ENSG00000212620	ENST00000391318	NA	NA	NA	NA	NA	inter
CUST_28933_PI429285431	1.5692654	A	2.1622374	A	0.662975747138024	0	lncRNA	30652-1_{1..853}	n326360|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000059019|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000059019|0.5628260|-0.5075331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326360|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000059019|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000059019|0.5628260|-0.5075331	chr1	157702734	157703586	+	NA	NA	NA	NA	FCRL2	NA	chr1:157693990-157729790	inner
CUST_50031_PI429285431	4.2981696	P	3.02204	A	2.42188372048406	0	lncRNA	53768-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00028128 range=chr8:26235648-26240466 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028128 range=chr8:26235648-26240466 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 26235648	 26238647	-	NA	NA	NA	NA	PPP2R2A	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20chr8:26225648-26230196"	NA	inter
CUST_5395_PI429285431	1.8839324	A	2.2161345	A	0.794323119511821	0	lncRNA	5329-1_{1..545}	"transcript_id ""ENST00000565041.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565041.1"" | genecode_v17"	chr16	  2036267	  2036811	-	ENSG00000261790.1	ENST00000565041.1	AC005606.14	AC005606.14-002	ZNF598	NA	chr16:2047768-2050358	inner
CUST_64_PI429285431	4.5583763	P	4.8888445	P	0.795278348987333	0	lncRNA	63-1_{1..833}	"transcript_id ""ENST00000436477.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000436477.2"" | genecode_v17"	chr17	 28900490	 28901322	-	ENSG00000231421.3	ENST00000436477.2	AC006050.2	AC006050.2-001	TBC1D29	NA	chr17:28890490-28890511	inter
CUST_1903_PI429285431	0.91705984	A	0.92092943	A	0.997321398473781	0	lncRNA	1894-1_{1..1668}	"transcript_id ""ENST00000505736.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505736.1"" | genecode_v17"	chr4	137717877	137719544	-	ENSG00000248869.1	ENST00000505736.1	RP11-138I17.1	RP11-138I17.1-001	NA	NA	NA	inter
CUST_40782_PI429285431	2.09356	A	0.92982274	A	2.24037038060228	0	lncRNA	41497-1_{1..3000}	n410521|NR_037663|lncRNA|Homosapiens||RefGeneNoncode|NR_037663||3.3739800|-0.1481415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410521|NR_037663|lncRNA|Homosapiens||RefGeneNoncode|NR_037663||3.3739800|-0.1481415	chr1	202116140	202119139	-	NA	NA	NA	NA	ARL8A	NA	chr1:202106140-202113866	inter
CUST_8388_PI429285431	0.9613544	A	0.92418134	A	1.02610122500586	0	lncRNA	9966-1_{1..1967}	lnc-MBOAT4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBOAT4-2:1	chr8	 30047332	 30049298	-	lnc-MBOAT4-2	lnc-MBOAT4-2:1	ENSG00000251116	XLOC_007043	DCTN6	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70chr8:30037332-30041155"	NA	inter
LNCA_21_P0004791	1.0345318	A	1.025292	A	1.00642509424762	0	lncRNA	ENST00000456715	NA	NA	NA	NA	XLOC_005881	NA	ENST00000456715	NA	NA	"BROAD Institute lincRNA (XLOC_005881), lincRNA [TCONS_00011596]"	chr6:153115770-153115711	hs|6q25.2	Agilent_HUMAN_G3V2	ENST00000456715	ENST00000456715	chr6	153115711	153115770	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005612	2.7364547	A	1.9609421	A	1.71179815761349	0	lncRNA	TCONS_00014446	NA	NA	NA	NA	XLOC_006663	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006663), lincRNA [TCONS_00014446]"	chr7:155057290-155057231	hs|7q36.2	Agilent_HUMAN_G3V2	TCONS_00014446	TCONS_00014446	chr7	155057231	155057290	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4255_PI429285431	1.2704723	A	0.97067106	A	1.23097481034419	0	lncRNA	4212-1_{1..891}	"transcript_id ""ENST00000552628.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552628.1"" | genecode_v17"	chr12	 50304228	 50305118	-	ENSG00000258135.1	ENST00000552628.1	RP11-70F11.11	RP11-70F11.11-003	FAIM2	NA	chr12:50294228-50297760	inter
CUST_39277_PI429285431	1.1208191	A	0.9769652	A	1.10485259203481	0	lncRNA	40249-1_{1..2484}	n386252|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fho.1||1.7482200|-0.1871856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386252|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fho.1||1.7482200|-0.1871856	chr2	 91963367	 91965850	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-31.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-55.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20"	NA	inter
CUST_2540_PI429285431	0.9064738	A	0.91087824	A	0.996951730269323	0	lncRNA	2528-1_{1..446}	"transcript_id ""ENST00000431394.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431394.1"" | genecode_v17"	chr6	 50555320	 50555765	-	ENSG00000230472.1	ENST00000431394.1	RP1-28O17.1	RP1-28O17.1-002	NA	NA	NA	inter
CUST_51071_PI429285431	0.9462035	A	0.9184668	A	1.01941161763713	0	lncRNA	54708-1_{1..696}	hg19_lincRNAsTranscripts_TCONS_l2_00006792 range=chr13:37363476-37369350 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006792 range=chr13:37363476-37369350 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 37363476	 37364171	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38196_PI429285431	0.9943347	A	1.0002259	A	0.995924857351204	0	lncRNA	39264-1_{1..1111}	n381522|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kep.3||0.2124370|-0.2427093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n381522|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kep.3||0.2124370|-0.2427093	chr10	 89084495	 89085605	-	NA	NA	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10"	NA	inter
CUST_28383_PI429285431	6.611704	P	6.9804773	P	0.774440711168877	0	lncRNA	30035-1_{1..282}	n325698|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045269|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045269|-0.8630100|-0.2038470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325698|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045269|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045269|-0.8630100|-0.2038470	chr13	 72885610	 72885891	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18432_PI429285431	0.97927994	A	0.93233633	A	1.03307400757597	0	lncRNA	20155-1_{1..3000}	lnc-FAM172A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM172A-1:1	chr5	 92936063	 92939062	-	lnc-FAM172A-1	lnc-FAM172A-1:1	ENSG00000250089	RP11-65F13.3	NR2F1	NA	chr5:92926063-92929788	inter
CUST_15496_PI429285431	4.9631233	P	4.8359222	P	1.09217277517172	0	lncRNA	17185-1_{1..438}	lnc-WDR69-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR69-2:1	chr2	229579274	229579711	+	lnc-WDR69-2	lnc-WDR69-2:1	XLOC_001892	linc-FBXO36-2	NA	NA	NA	inter
CUST_13956_PI429285431	4.517248	P	4.824294	P	0.808295096091213	0	lncRNA	15601-1_{1..699}	lnc-ITGA11-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITGA11-2:3	chr15	 68778961	 68779659	-	lnc-ITGA11-2	lnc-ITGA11-2:3	XLOC_011515	linc-ITGA11	NA	NA	NA	inter
CUST_218_PI429285431	11.008825	P	10.83348	P	1.12923441286962	0	lncRNA	208-1_{1..674}	"transcript_id ""ENST00000431800.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431800.1"" | genecode_v17"	chr1	 44514049	 44514722	+	ENSG00000230615.1	ENST00000431800.1	RP5-1198O20.4	RP5-1198O20.4-004	NA	NA	NA	inter
CUST_39270_PI429285431	5.617156	P	6.0405626	P	0.74566183113814	0	lncRNA	40241-2_{3001..5487}	n386193|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010dko.2||-0.0991530|-0.2996874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n386193|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010dko.2||-0.0991530|-0.2996874	chr18	  5241098	  5243584	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30"	NA	inter
CUST_47819_PI429285431	0.92296046	A	0.91285354	A	1.00703017960351	0	lncRNA	51733-1_{1..2072}	"gi|397140037|ref|XR_159139.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 243 (LINC00243), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397140037|ref|XR_159139.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 243 (LINC00243), misc_RNA"	NT_167245.1	  2074738	  2076809	-	401247	XR_159139.1	NA	NA	NA	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.80;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00"	NA	Unknown
CUST_44094_PI429285431	1.3711634	A	0.9731685	A	1.31767529367704	0	lncRNA	48760-2_{3001..3700}	"gi|310124546|ref|XR_109937.1| PREDICTED: Homo sapiens uncharacterized FLJ45964 (FLJ45964), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124546|ref|XR_109937.1| PREDICTED: Homo sapiens uncharacterized FLJ45964 (FLJ45964), misc_RNA"	Chr2	240502995	240503694	+	401040	XR_109937.1	NA	NA	NA	NA	NA	inter
CUST_45441_PI429285431	8.296	P	9.073476	P	0.583386537730977	0	lncRNA	49859-1_{1..620}	"gi|341915484|ref|XR_108954.2| PREDICTED: Homo sapiens uncharacterized LOC100506119, transcript variant 4 (LOC100506119), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915484|ref|XR_108954.2| PREDICTED: Homo sapiens uncharacterized LOC100506119, transcript variant 4 (LOC100506119), misc_RNA"	NA	NA	NA	NA	NA	XR_108954.2	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00"	NA	Unknown
CUST_38560_PI429285431	0.9625948	A	0.9259231	A	1.02574470008774	0	lncRNA	39571-1_{1..2282}	n383456|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002nsx.1||-0.0180346|-0.2656264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383456|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002nsx.1||-0.0180346|-0.2656264	chr19	 31617484	 31619765	-	NA	NA	NA	NA	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00"	NA	inter
CUST_30536_PI429285431	4.8767037	P	5.765451	P	0.540082871625556	0	lncRNA	32316-1_{1..1821}	n335706|CR621930|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000301125|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000301125|6.2295300|-0.0561144	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335706|CR621930|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000301125|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000301125|6.2295300|-0.0561144	chr19	  2431551	  2433371	-	NA	NA	NA	NA	TMPRSS9	NA	chr19:2421551-2426086	inner
CUST_22990_PI429285431	1.4541086	A	0.9137422	A	1.45434182834597	0	lncRNA	24564-1_{1..536}	lnc-RFPL4B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RFPL4B-1:1	chr6	112627531	112628066	+	lnc-RFPL4B-1	lnc-RFPL4B-1:1	ENSG00000226440.1	RP11-506B6.6	NA	NA	NA	inter
CUST_51060_PI429285431	1.1324818	A	1.4436376	A	0.805995785429471	0	lncRNA	54698-1_{1..554}	hg19_lincRNAsTranscripts_TCONS_l2_00006749 range=chr13:25136236-25140987 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006749 range=chr13:25136236-25140987 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 25136236	 25136789	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001111	5.3656406	P	5.1535625	P	1.15835551183529	0	lncRNA	ENST00000440492	NA	NA	NA	NA	XLOC_000755	NA	ENST00000440492	THC2644835	NA	"BROAD Institute lincRNA (XLOC_000755), lincRNA [TCONS_00000492]"	chr1:27986898-27986839	hs|1p36.11	Agilent_HUMAN_G3V2	ENST00000440492	ENST00000440492	chr1	 27986839	 27986898	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50567_PI429285431	1.463741	A	1.0516523	A	1.3306108473881	0	lncRNA	54259-1_{1..283}	hg19_lincRNAsTranscripts_TCONS_l2_00030904 range=chrY:16020180-16027914 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030904 range=chrY:16020180-16027914 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrY	 16020180	 16020462	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39760_PI429285431	1.1844771	A	1.0051547	A	1.13235192125946	0	lncRNA	40679-5_{12001..15000}	n405913|NR_003149|lncRNA|Homosapiens||RefGeneNoncode|NR_003149||40.8024000|-0.2615927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405913|NR_003149|lncRNA|Homosapiens||RefGeneNoncode|NR_003149||40.8024000|-0.2615927	chr5	 89866616	 89869615	+	NA	NA	NA	NA	GPR98	NA	chr5:89854617-90460033	inner
CUST_24366_PI429285431	2.528472	A	1.348912	A	2.2650768513184	0	lncRNA	25919-1_{1..640}	lnc-RAB4A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAB4A-1:2	chr1	229458689	229459328	+	lnc-RAB4A-1	lnc-RAB4A-1:2	ENSG00000237481.1	RP4-803J11.2	C1orf96	NA	chr1:229456752-229468834	inner
LNCA_21_P0007703	1.0698568	A	0.928396	A	1.10302141430033	0	lncRNA	BC042591	NA	BC042591	NA	Hs.434238	XLOC_010057	NA	NA	THC2630376	NA	"BROAD Institute lincRNA (XLOC_010057), lincRNA [TCONS_00020763]"	chr12:43040129-43038095	hs|12q12	Agilent_HUMAN_G3V2	BC042591	BC042591	chr12	 43038095	 43040129	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41832_PI429285431	0.9072964	A	0.90198696	A	1.00368700370353	0	lncRNA	43444-1_{1..110}	ENST00000385189 ncrna:miRNA chromosome:GRCh37:12:54385522:54385631:1 gene:ENSG00000207924 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385189 ncrna:miRNA chromosome:GRCh37:12:54385522:54385631:1 gene:ENSG00000207924 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 54385522	 54385631	+	ENSG00000207924	ENST00000385189	NA	NA	HOXC9	NA	chr12:54393877-54395631	inter
CUST_14869_PI429285431	0.9258711	A	0.92775685	A	0.998693751590385	0	lncRNA	16533-1_{1..514}	lnc-HNRNPA2B1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HNRNPA2B1-1:1	chr7	 26284446	 26284959	-	lnc-HNRNPA2B1-1	lnc-HNRNPA2B1-1:1	XLOC_006386	linc-HNRNPA2B1-1	NA	NA	NA	inter
CUST_19371_PI429285431	3.8389473	P	3.765738	P	1.05205439566617	0	lncRNA	21033-1_{1..631}	lnc-ABCA1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ABCA1-2:1	chr9	108320051	108320681	-	lnc-ABCA1-2	lnc-ABCA1-2:1	ENSG00000228317.1	RP11-235C23.5	FKTN	NA	chr9:108320411-108330310	inter
CUST_36319_PI429285431	2.3733704	A	2.5832894	A	0.864585772045604	0	lncRNA	37551-1_{1..3000}	n344846|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_395|NULL|-1.5420300|-0.2970106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344846|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_395|NULL|-1.5420300|-0.2970106	chr5	115632110	115635109	+	NA	NA	NA	NA	COMMD10	NA	chr5:115622110-115628978	inter
CUST_4563_PI429285431	0.926029	A	1.2873617	A	0.77844515307194	0	lncRNA	4512-1_{1..552}	"transcript_id ""ENST00000425800.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425800.1"" | genecode_v17"	chr13	 24072935	 24073486	+	ENSG00000227893.1	ENST00000425800.1	LINC00352	LINC00352-001	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90"	NA	inter
CUST_37611_PI429285431	0.9469926	A	0.9208303	A	1.01829974978995	0	lncRNA	38710-1_{1..3000}	n346090|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1640|NULL|-1.3048300|-0.3192358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346090|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1640|NULL|-1.3048300|-0.3192358	chr14	 54039945	 54042944	-	NA	NA	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70"	NA	inter
CUST_27458_PI429285431	0.9221959	A	0.91618246	A	1.00417689800506	0	lncRNA	29028-1_{1..778}	n324634|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316046|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316046|-1.3859700|-0.4356350	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324634|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316046|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316046|-1.3859700|-0.4356350	chr5	 56102382	 56103159	+	NA	NA	NA	NA	MAP3K1	NA	chr5:56110900-56113880	inter
CUST_24116_PI429285431	1.3552985	A	1.8743476	A	0.697831631985551	0	lncRNA	25666-1_{1..575}	lnc-C7orf45-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C7orf45-1:1	chr7	129845091	129845665	+	lnc-C7orf45-1	lnc-C7orf45-1:1	ENSG00000240571.1	RP11-775D22.3	TMEM209	"hg19_refFlat_TMEM209:range=chr7:129806291-1298452155'pad=0,hg19_refFlat_TMEM209:range=chr7:129806291-1298452155'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr7:129835091-129845338"	NA	inner
CUST_42193_PI429285431	5.88191	P	5.7478485	P	1.09737871624742	0	lncRNA	44261-1_{1..85}	ENST00000585278 ncrna:miRNA chromosome:GRCh37:2:89111884:89111968:1 gene:ENSG00000265510 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585278 ncrna:miRNA chromosome:GRCh37:2:89111884:89111968:1 gene:ENSG00000265510 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 89111884	 89111968	+	ENSG00000265510	ENST00000585278	NA	NA	NA	NA	NA	inter
CUST_34513_PI429285431	1.7794924	A	1.6393316	A	1.10202793893512	0	lncRNA	35977-1_{1..1719}	n341390|BC045738|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3859|NULL|-0.1720060|-0.3465088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341390|BC045738|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3859|NULL|-0.1720060|-0.3465088	chr8	  2447075	  2448793	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10"	NA	inter
CUST_11540_PI429285431	4.2343197	P	4.008179	P	1.16970173459659	0	lncRNA	13111-1_{1..423}	lnc-BTN1A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTN1A1-1:1	chr6	 26500433	 26500855	+	lnc-BTN1A1-1	lnc-BTN1A1-1:1	XLOC_005211	linc-BTN1A1-1	BTN1A1	NA	chr6:26490433-26510653	inter
CUST_35145_PI429285431	4.006448	P	2.5629892	A	2.7197212609762	0	lncRNA	36547-1_{1..2433}	n342116|AK057721|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4598|NULL|-0.9520270|-0.2722056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342116|AK057721|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4598|NULL|-0.9520270|-0.2722056	chr6	122757933	122760365	-	NA	NA	NA	NA	HSF2	NA	chr6:122747933-122754264	inter
CUST_51413_PI429285431	4.0672846	P	4.241818	P	0.88605404255674	0	lncRNA	54990-1_{1..390}	hg19_lincRNAsTranscripts_TCONS_l2_00009549 range=chr16:213181-215176 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009549 range=chr16:213181-215176 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	   213181	   213570	+	NA	NA	NA	NA	HBA2	NA	chr16:222846-223709	inter
CUST_38438_PI429285431	7.8175597	P	8.531204	P	0.609777870735333	0	lncRNA	39464-2_{3001..3634}	n382664|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bhh.3||2.0356700|-0.1180367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382664|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bhh.3||2.0356700|-0.1180367	chr15	 82767078	 82767711	-	NA	NA	NA	NA	NA	"hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_DNM1:range=chr9:130965750-1310154015'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310154015'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
LNCA_21_P0012208	2.3453922	A	2.7469728	A	0.757028437153664	0	lncRNA	AK127572	NA	AK127572	NA	Hs.596577	XLOC_l2_009273	NA	NA	THC2618400	NA	"BROAD Institute lincRNA (XLOC_l2_009273), lincRNA [TCONS_l2_00017315]"	chr21:47875234-47875175	hs|21q22.3	Agilent_HUMAN_G3V2	AK127572	AK127572	chr21	 47875175	 47875234	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_178_PI429201921	3.4180813	P	3.9586298	P	0.687509474303752	0	lncRNA	148-1_{1..3000}	TC20001252.hg.1	 TCONS_00028192-XLOC_013543 // Rinn lincRNAs // linc-ARFGEF2-12 chr20:+:46523131-46525630 // chr20 // 100 // 100 // 0 // --- // 0 /// TCONS_00028189-XLOC_013543 // Rinn lincRNAs // linc-ARFGEF2-12 chr20:+:46523122-46525630 // chr20 // 100 // 100 // 0 // --- // 0 /// TCONS_00028190-XLOC_013543 // Rinn lincRNAs // linc-ARFGEF2-12 chr20:+:46523122-46525630 // chr20 // 100 // 100 // 0 // --- // 0 /// TCONS_00028191-XLOC_013543 // Rinn lincRNAs // linc-ARFGEF2-12 chr20:+:46523122-46525630 // chr20 // 100 // 100 // 0 // --- // 0 ///TCONS_00028187-XLOC_013543 // Rinn lincRNAs // linc-ARFGEF2-12 chr20:+:46523122-46525630 // chr20 // 100 // 100 // 0 // --- // 0 /// TCONS_00028186-XLOC_013543 // Rinn lincRNAs // linc-ARFGEF2-12 chr20:+:46523122-46525630 // chr20 // 100 // 100 // 0 // --- // 0 /// TCONS_00028188-XLOC_013543 // Rinn lincRNAs // linc-ARFGEF2-12 chr20:+:46523122-46525630 // chr20 // 100 // 100 // 0 // --- // 0 /// TCONS_00028184-XLOC_013543 // Rinn lincRNAs // linc-ARFGEF2-12 chr20:+:46523122-46525630 // chr20 // 100 // 100 // 0 // --- // 0 /// TCONS_00028193-XLOC_013543 // Rinn lincRNAs // linc-ARFGEF2-12 chr20:+:46523132-46527679 // chr20 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr20:+:46523122-46525630	NA	Affy_HUMAN_HTA2.0	TCONS_00028187-XLOC_013543	linc-ARFGEF2-12	chr20	 46523122	 46525630	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011209	3.641379	P	4.3570724	P	0.608912400991137	0	lncRNA	ENST00000416576	NA	NA	NA	NA	XLOC_l2_003885	NA	ENST00000416576	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003885), lincRNA [TCONS_l2_00007481]"	chr13:19526685-19525935	hs|13q12.11	Agilent_HUMAN_G3V2	ENST00000416576	ENST00000416576	chr13	 19525935	 19526685	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33354_PI429285431	0.91776776	A	1.9644355	A	0.484084987842739	0	lncRNA	34935-1_{1..3000}	n340073|BC040544|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2528|NULL|-1.2502000|-0.4379001	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n340073|BC040544|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2528|NULL|-1.2502000|-0.4379001	chr4	 65779998	 65782997	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46711_PI429285431	5.3462577	P	5.283602	P	1.0443864896853	0	lncRNA	50870-1_{1..3000}	"gi|378824465|ref|NR_046393.1| Homo sapiens active BCR-related (ABR), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378824465|ref|NR_046393.1| Homo sapiens active BCR-related (ABR), transcript variant 5, non-coding RNA"	Chr17	   906758	   909757	-	29	NR_046393.1	NA	NA	NA	NA	NA	inter
CUST_44591_PI429285431	6.729529	P	5.775705	P	1.93700006183979	0	lncRNA	49170-2_{3001..4447}	"gi|290560747|ref|NR_033362.1| Homo sapiens autophagy related 12 (ATG12), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|290560747|ref|NR_033362.1| Homo sapiens autophagy related 12 (ATG12), transcript variant 2, non-coding RNA"	Chr5	115166893	115168339	-	9140	NR_033362.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90"	NA	inter
CUST_13516_PI429285431	2.3548386	A	2.160069	A	1.14454136147613	0	lncRNA	15156-1_{1..920}	lnc-ZNF583-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF583-1:6	chr19	 56905586	 56906505	+	lnc-ZNF583-1	lnc-ZNF583-1:6	XLOC_013167	linc-ZNF583-1	ZNF583	NA	chr19:56915383-56916173	inter
CUST_3169_PI429285431	3.7276149	P	3.7261734	P	1.00099967099908	0	lncRNA	3148-1_{1..712}	"transcript_id ""ENST00000519557.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519557.1"" | genecode_v17"	chr8	 70337857	 70338568	-	ENSG00000253479.1	ENST00000519557.1	RP11-744J10.3	RP11-744J10.3-002	NA	NA	NA	inter
CUST_9352_PI429285431	1.3592131	A	1.3614843	A	0.998426962645769	0	lncRNA	10856-1_{1..445}	lnc-MKI67IP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MKI67IP-1:2	chr2	123260716	123261160	-	lnc-MKI67IP-1	lnc-MKI67IP-1:2	XLOC_002301	linc-MKI67IP-3	NA	NA	NA	inter
CUST_12085_PI429285431	1.3101469	A	0.9182101	A	1.31215377194145	0	lncRNA	13679-1_{1..394}	lnc-ATP8A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP8A1-1:1	chr4	 42393192	 42393585	-	lnc-ATP8A1-1	lnc-ATP8A1-1:1	XLOC_003939	linc-BEND4	SHISA3	NA	chr4:42399856-42403285	inter
CUST_49328_PI429285431	2.2542772	A	2.2420144	A	1.00853615217969	0	lncRNA	53143-1_{1..1188}	hg19_lincRNAsTranscripts_TCONS_l2_00022344 range=chr5:67088975-67101108 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022344 range=chr5:67088975-67101108 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 67088975	 67090162	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30963_PI429285431	4.811881	P	4.824224	P	0.991480978624427	0	lncRNA	32751-1_{1..214}	n337090|DQ409329|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343127_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343127_04|0.2584870|-0.1940675	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337090|DQ409329|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343127_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343127_04|0.2584870|-0.1940675	chr6	  3076965	  3077178	+	NA	NA	NA	NA	RIPK1	NA	chr6:3077058-3087179	inner
CUST_21000_PI429285431	0.93358773	A	1.5859047	A	0.636257662106165	0	lncRNA	22629-1_{1..682}	lnc-TSN-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSN-4:1	chr2	122289954	122290635	+	lnc-TSN-4	lnc-TSN-4:1	ENSG00000265451.1	RP11-204L24.2	CLASP1	NA	chr2:122279954-122300281	inner
CUST_25489_PI429285431	1.8177747	A	3.4759438	A	0.316840991023028	0	lncRNA	27019-1_{1..2222}	lnc-CD40LG-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD40LG-2:1	chrX	136075645	136077866	+	lnc-CD40LG-2	lnc-CD40LG-2:1	ENSG00000234062.3	RP11-308D16.4	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TBX1:range=chr22:19747167-197543905'pad=0,hg19_refFlat_TBX1:range=chr22:19747167-197543905'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.70"	NA	inter
CUST_38112_PI429285431	2.1843178	A	2.3249476	A	0.907123069650148	0	lncRNA	39186-1_{1..1324}	n381189|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001eda.1||3.7699900|-0.2006752	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n381189|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001eda.1||3.7699900|-0.2006752	chr1	113465971	113467294	+	NA	NA	NA	NA	SLC16A1	NA	chr1:113455971-113477295	inner
CUST_24539_PI429285431	0.91714483	A	0.92307246	A	0.99589970921979	0	lncRNA	26089-1_{1..363}	lnc-DMXL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DMXL2-1:1	chr15	 51572051	 51572413	-	lnc-DMXL2-1	lnc-DMXL2-1:1	ENSG00000259701.1	RP11-108K3.3	CYP19A1	NA	chr15:51562051-51582212	inner
CUST_5380_PI429285431	4.2068677	P	4.3236704	P	0.922229231457646	0	lncRNA	5316-1_{1..3000}	"transcript_id ""ENST00000568394.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568394.1"" | genecode_v17"	chr16	  1025761	  1028760	-	ENSG00000260807.2	ENST00000568394.1	RP11-161M6.2	RP11-161M6.2-002	LMF1	NA	chr16:1015761-1031318	inter
CUST_42991_PI429285431	2.5907428	A	1.7035611	A	1.84955948403736	0	lncRNA	46149-1_{1..134}	ENST00000516170 ncrna:snoRNA chromosome:GRCh37:4:160428047:160428180:-1 gene:ENSG00000251979 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516170 ncrna:snoRNA chromosome:GRCh37:4:160428047:160428180:-1 gene:ENSG00000251979 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	160428047	160428180	-	ENSG00000251979	ENST00000516170	NA	NA	NA	NA	NA	inter
CUST_23566_PI429285431	5.4035726	P	5.7338395	P	0.79538932233674	0	lncRNA	25134-1_{1..487}	lnc-ATP4A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATP4A-1:1	chr19	 36036221	 36036707	-	lnc-ATP4A-1	lnc-ATP4A-1:1	ENSG00000236144.1	AD000090.2	ATP4A	"hg19_refFlat_GAPDHS:range=chr19:36024430-360360725'pad=0,hg19_refFlat_GAPDHS:range=chr19:36024430-360360725'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30chr19:36041095-36046405"	NA	inter
CUST_48860_PI429285431	4.135068	P	4.5497737	P	0.750172509137542	0	lncRNA	52696-1_{1..770}	hg19_lincRNAsTranscripts_TCONS_l2_00018428 range=chr3:5882629-5884582 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018428 range=chr3:5882629-5884582 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	  5882629	  5883398	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23342_PI429285431	0.91868305	A	0.9202441	A	0.998918547785176	0	lncRNA	24911-1_{1..369}	lnc-TM6SF1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TM6SF1-1:2	chr15	 83853400	 83853768	+	lnc-TM6SF1-1	lnc-TM6SF1-1:2	ENSG00000259986.1	RP11-382A20.4	HDGFRP3	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20chr15:83843400-83863548"	NA	inner
CUST_29169_PI429285431	1.745466	A	1.9612037	A	0.861105733898449	0	lncRNA	30913-1_{1..605}	n326681|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000008192|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000008192|-1.1298100|-0.1588755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326681|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000008192|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000008192|-1.1298100|-0.1588755	chr1	 21615401	 21616005	+	NA	NA	NA	NA	ECE1	NA	chr1:21605401-21626454	inner
CUST_46096_PI429285431	5.375783	P	4.4102015	P	1.95285048879151	0	lncRNA	50362-1_{1..3000}	"gi|313482850|ref|NR_037615.1| Homo sapiens CCR4-NOT transcription complex, subunit 2 (CNOT2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|313482850|ref|NR_037615.1| Homo sapiens CCR4-NOT transcription complex, subunit 2 (CNOT2), transcript variant 4, non-coding RNA"	Chr12	 70637494	 70640493	+	4848	NR_037615.1	NA	NA	NA	NA	NA	inter
CUST_45452_PI429285431	10.878424	P	11.14665	P	0.830339940102075	0	lncRNA	49868-1_{1..1719}	"gi|389565497|ref|NR_051969.1| Homo sapiens mitochondrial ribosomal protein S2 (MRPS2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|389565497|ref|NR_051969.1| Homo sapiens mitochondrial ribosomal protein S2 (MRPS2), transcript variant 4, non-coding RNA"	Chr9	138392477	138394195	+	51116	NR_051969.1	NA	NA	NA	NA	NA	inter
CUST_28022_PI429285431	4.32762	P	4.694511	P	0.775451791876148	0	lncRNA	29636-1_{1..1018}	n325283|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327461|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327461|-1.1097000|-0.2991198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325283|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327461|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327461|-1.1097000|-0.2991198	chr2	 65111384	 65112401	-	NA	NA	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40"	NA	inter
CUST_2247_PI429285431	0.93149084	A	0.91410065	A	1.01212690294229	0	lncRNA	2239-1_{1..676}	"transcript_id ""ENST00000508719.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508719.1"" | genecode_v17"	chr5	 87988462	 87989137	-	ENSG00000250377.1	ENST00000508719.1	CTC-467M3.3	CTC-467M3.3-001	NA	NA	NA	inter
CUST_37030_PI429285431	0.9237369	A	0.9207243	A	1.00209035695235	0	lncRNA	38168-1_{1..1021}	n345485|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1034|NULL|-1.3034000|-0.2704283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345485|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1034|NULL|-1.3034000|-0.2704283	chr1	225846073	225847093	-	NA	NA	NA	NA	ENAH	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80chr1:225836073-225840845"	NA	inter
CUST_2896_PI429285431	3.477268	P	4.0325847	P	0.680507657007141	0	lncRNA	2877-1_{1..429}	"transcript_id ""ENST00000490162.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000490162.2"" | genecode_v17"	chr7	106415457	106415885	+	ENSG00000228742.5	ENST00000490162.2	RP5-884M6.1	RP5-884M6.1-003	NA	NA	NA	inter
CUST_35166_PI429285431	0.9192806	A	0.9133705	A	1.004104971561	0	lncRNA	36568-1_{1..3000}	n342144|BX647721|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4630|NULL|-0.0134897|-0.3049047	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n342144|BX647721|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4630|NULL|-0.0134897|-0.3049047	chr10	 95334373	 95337372	+	NA	NA	NA	NA	O3FAR1	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.61;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40chr10:95326422-95348191"	NA	inner
CUST_13412_PI429285431	6.539956	P	6.655534	P	0.923012441795754	0	lncRNA	15050-1_{1..2680}	lnc-AC092327.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092327.1-1:5	chr16	 86379098	 86381777	-	lnc-AC092327.1-1	lnc-AC092327.1-1:5	XLOC_012045	linc-COX4NB-6	NA	NA	NA	inter
CUST_48049_PI429285431	0.91931236	A	0.92102	A	0.998817054381036	0	lncRNA	51928-1_{1..1047}	"gi|397138012|ref|XR_159350.1| PREDICTED: Homo sapiens uncharacterized LOC100996620 (LOC100996620), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138012|ref|XR_159350.1| PREDICTED: Homo sapiens uncharacterized LOC100996620 (LOC100996620), misc_RNA"	NA	NA	NA	NA	NA	XR_159350.1	NA	NA	NA	NA	NA	Unknown
CUST_16188_PI429285431	3.598836	P	3.447558	P	1.11055281089264	0	lncRNA	17893-1_{1..488}	lnc-AC092031.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092031.1-1:3	chr7	 96293515	 96294002	-	lnc-AC092031.1-1	lnc-AC092031.1-1:3	XLOC_006529	linc-SLC25A13	NA	NA	NA	inter
LNCA_21_P0008470	1.6097505	A	2.3002217	A	0.619651431971543	0	lncRNA	TCONS_00022820	NA	NA	NA	NA	XLOC_011091	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011091), lincRNA [TCONS_00022820]"	chr14:84687950-84687891	hs|14q31.2	Agilent_HUMAN_G3V2	TCONS_00022820	TCONS_00022820	chr14	 84687891	 84687950	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9879_PI429285431	3.5165029	P	3.5263848	P	0.993173793993557	0	lncRNA	11402-1_{1..322}	lnc-PRELID2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRELID2-2:1	chr5	144775556	144775877	-	lnc-PRELID2-2	lnc-PRELID2-2:1	XLOC_005040	linc-YIPF5-4	NA	NA	NA	inter
CUST_38045_PI429285431	1.535899	A	1.357085	A	1.13195295524285	0	lncRNA	39124-2_{3001..3597}	n377617|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030000||0.1676980|-0.2897003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377617|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030000||0.1676980|-0.2897003	chr6	  4304448	  4305044	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90"	NA	inter
CUST_9875_PI429285431	0.92534256	A	0.9316145	A	0.995662058638897	0	lncRNA	11398-1_{1..284}	lnc-CYP7B1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CYP7B1-5:2	chr8	 66095631	 66095914	-	lnc-CYP7B1-5	lnc-CYP7B1-5:2	XLOC_007104	linc-CYP7B1-1	NA	NA	NA	inter
CUST_2077_PI429285431	0.9035132	A	0.8998024	A	1.00257544132339	0	lncRNA	2068-1_{1..1679}	"transcript_id ""ENST00000510879.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510879.1"" | genecode_v17"	chr5	  9511445	  9513123	+	ENSG00000251370.1	ENST00000510879.1	CTD-2201E9.1	CTD-2201E9.1-001	SEMA5A	NA	chr5:9501445-9528198	inner
CUST_44784_PI429285431	0.91648847	A	1.3609862	A	0.734840104513806	0	lncRNA	49323-1_{1..570}	"gi|310119808|ref|XR_108616.1| PREDICTED: Homo sapiens uncharacterized LOC100506926, transcript variant 1 (LOC100506926), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119808|ref|XR_108616.1| PREDICTED: Homo sapiens uncharacterized LOC100506926, transcript variant 1 (LOC100506926), misc_RNA"	NA	NA	NA	NA	NA	XR_108616.1	NA	NA	NA	NA	NA	Unknown
CUST_16299_PI429285431	0.9016155	A	0.8988361	A	1.00192839023118	0	lncRNA	18005-1_{1..3000}	lnc-RPP30-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPP30-2:1	chr10	 92748602	 92751601	+	lnc-RPP30-2	lnc-RPP30-2:1	XLOC_008559	linc-PCGF5-3	NA	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70"	NA	inter
CUST_47988_PI429285431	4.616257	P	4.6858573	P	0.952901963849707	0	lncRNA	51876-1_{1..488}	"gi|410173036|ref|XR_172100.1| PREDICTED: Homo sapiens uncharacterized LOC100652749 (LOC100652749), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410173036|ref|XR_172100.1| PREDICTED: Homo sapiens uncharacterized LOC100652749 (LOC100652749), misc_RNA"	NA	NA	NA	NA	NA	XR_172100.1	NA	NA	NA	NA	NA	Unknown
CUST_30075_PI429285431	4.4468517	P	5.0899973	P	0.640315305355682	0	lncRNA	31844-1_{1..212}	n334592|U78793|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221451|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221451|0.2815080|-0.3321389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334592|U78793|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221451|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221451|0.2815080|-0.3321389	chr11	 71903173	 71903384	+	NA	NA	NA	NA	FOLR1	NA	chr11:71900602-71907367	inner
CUST_8494_PI429285431	4.1817293	P	2.5740383	A	3.04763684035777	0	lncRNA	10058-1_{1..1614}	lnc-RPIA-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPIA-2:1	chr2	 88930918	 88932531	+	lnc-RPIA-2	lnc-RPIA-2:1	ENSG00000234028	AC062029.1	EIF2AK3	NA	chr2:88920918-88927094	inter
CUST_16991_PI429285431	1.5065248	A	1.2759638	A	1.17329110131547	0	lncRNA	18701-1_{1..736}	lnc-DCTD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCTD-1:1	chr4	183798664	183799399	-	lnc-DCTD-1	lnc-DCTD-1:1	XLOC_004195	linc-AGA-2	NA	NA	NA	inter
CUST_29872_PI429285431	3.3826056	P	3.812593	P	0.742268268000796	0	lncRNA	31635-1_{1..273}	n333871|L32067|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192853|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192853|-1.1139900|-0.2514495	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333871|L32067|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192853|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192853|-1.1139900|-0.2514495	chrX	110488333	110488605	+	NA	NA	NA	NA	CAPN6	NA	chrX:110488327-110498606	inner
CUST_26838_PI429285431	3.5053682	P	3.5015976	P	1.00261699913863	0	lncRNA	28352-1_{1..927}	n323909|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000107231|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000107231|-0.3070910|-0.2903655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323909|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000107231|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000107231|-0.3070910|-0.2903655	chrX	 13194581	 13195507	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	inter
CUST_745_PI429285431	1.8697625	A	3.3895547	P	0.348736143523902	0	lncRNA	736-1_{1..568}	"transcript_id ""ENST00000452909.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452909.1"" | genecode_v17"	chr2	 10857899	 10858466	+	ENSG00000236162.1	ENST00000452909.1	AC092687.3	AC092687.3-001	ATP6V1C2	NA	chr2:10861775-10871078	inter
CUST_6919_PI429285431	0.9286874	A	1.3041902	A	0.77083671818656	0	lncRNA	6871-1_{1..1241}	"transcript_id ""ENST00000422917.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422917.1"" | genecode_v17"	chr22	 17227759	 17228999	-	ENSG00000235343.1	ENST00000422917.1	AC005301.8	AC005301.8-001	NA	NA	NA	inter
CUST_34846_PI429285431	2.7616005	A	1.5961627	A	2.24301271706081	0	lncRNA	36273-1_{1..3000}	n341749|AK127803|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4223|NULL|9.0907500|-0.0911894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341749|AK127803|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4223|NULL|9.0907500|-0.0911894	chr9	109625381	109628380	+	NA	NA	NA	NA	ZNF462	NA	chr9:109615381-109699383	inter
CUST_16182_PI429285431	3.2764635	P	3.1878552	A	1.06334392970543	0	lncRNA	17887-1_{1..569}	lnc-CLDN6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLDN6-1:1	chr16	  3057007	  3057575	-	lnc-CLDN6-1	lnc-CLDN6-1:1	XLOC_011858	linc-PKMYT1	CLDN9	NA	chr16:3062457-3064506	inter
CUST_7989_PI429285431	0.9130422	A	1.1144261	A	0.869715891209002	0	lncRNA	9600-1_{1..989}	lnc-EVX1-10:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EVX1-10:5	chr7	 27161538	 27162526	+	lnc-EVX1-10	lnc-EVX1-10:5	ENSG00000253552	AC004080.12	HOXA3	NA	chr7:27151538-27166639	inner
CUST_6350_PI429285431	1.2287862	A	1.0465945	A	1.13460623721525	0	lncRNA	6274-1_{1..561}	"transcript_id ""ENST00000595525.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595525.1"" | genecode_v17"	chr19	 15871185	 15871745	+	ENSG00000268673.2	ENST00000595525.1	AC011537.3	AC011537.3-001	NA	"hg19_refFlat_CYP4F2:range=chr19:15989581-160084215'pad=0,hg19_refFlat_CYP4F2:range=chr19:15989581-160084215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CYP4F11:range=chr19:16024542-160452185'pad=0,hg19_refFlat_CYP4F11:range=chr19:16024542-160452185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CYP4F3:range=chr19:15752226-157701955'pad=0,hg19_refFlat_CYP4F3:range=chr19:15752226-157701955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CYP4F12:range=chr19:15784340-158078955'pad=0,hg19_refFlat_CYP4F12:range=chr19:15784340-158078955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40"	NA	inter
CUST_3517_PI429285431	1.5307012	A	1.11696	A	1.33213583648465	0	lncRNA	3488-1_{1..744}	"transcript_id ""ENST00000426204.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426204.1"" | genecode_v17"	chr9	113901526	113902269	-	ENSG00000227531.1	ENST00000426204.1	RP11-202G18.1	RP11-202G18.1-001	NA	NA	NA	inter
CUST_24176_PI429285431	3.9358828	P	4.4619493	P	0.694445557171635	0	lncRNA	25727-1_{1..2615}	lnc-GUCY1A3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-GUCY1A3-1:1	chr4	156655600	156658214	+	lnc-GUCY1A3-1	lnc-GUCY1A3-1:1	ENSG00000260244.1	RP11-588K22.2	GUCY1A3	NA	chr4:156645600-156658214	inner
CUST_40124_PI429285431	6.924229	P	7.004114	P	0.946133061808201	0	lncRNA	40965-1_{1..1549}	n407679|NR_027146|lncRNA|Homosapiens||RefGeneNoncode|NR_027146||2.6620300|-0.1730709	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n407679|NR_027146|lncRNA|Homosapiens||RefGeneNoncode|NR_027146||2.6620300|-0.1730709	chr17	 71745408	 71746956	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48891_PI429285431	1.2369034	A	0.90924925	A	1.25497110733042	0	lncRNA	52730-1_{1..425}	hg19_lincRNAsTranscripts_TCONS_l2_00019379 range=chr3:90278989-90291164 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019379 range=chr3:90278989-90291164 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 90278989	 90279413	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18401_PI429285431	3.9527853	P	4.059368	P	0.928785464948216	0	lncRNA	20126-1_{1..460}	lnc-SLC39A11-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC39A11-2:4	chr17	 70115555	 70116014	-	lnc-SLC39A11-2	lnc-SLC39A11-2:4	ENSG00000234899	AC005152.2	SOX9	NA	chr17:70117161-70122561	inter
CUST_41327_PI429285431	6.038994	P	5.955477	P	1.05959798110689	0	lncRNA	42378-1_{1..86}	ENST00000584530 ncrna:miRNA chromosome:GRCh37:9:124882361:124882446:-1 gene:ENSG00000266583 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584530 ncrna:miRNA chromosome:GRCh37:9:124882361:124882446:-1 gene:ENSG00000266583 gene_biotype:miRNA transcript_biotype:miRNA	chr9	124882361	124882446	-	ENSG00000266583	ENST00000584530	NA	NA	NA	NA	NA	inter
CUST_14107_PI429285431	2.5365696	A	2.3811276	A	1.1137627906432	0	lncRNA	15754-1_{1..376}	lnc-HNF1A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HNF1A-1:2	chr12	121345458	121345833	+	lnc-HNF1A-1	lnc-HNF1A-1:2	XLOC_009911	linc-HNF1A	SPPL3	NA	chr12:121335458-121342155	inter
CUST_36178_PI429285431	3.5275989	P	3.8818226	P	0.782290472699017	0	lncRNA	37448-1_{1..3000}	n344736|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_285|NULL|-1.6131600|-0.3223694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344736|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_285|NULL|-1.6131600|-0.3223694	chrX	 45604650	 45607649	-	NA	NA	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-22.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10"	NA	inter
CUST_10591_PI429285431	0.9162618	A	0.9126361	A	1.00251630432539	0	lncRNA	12121-1_{1..401}	lnc-PMAIP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PMAIP1-2:1	chr18	 57968186	 57968586	+	lnc-PMAIP1-2	lnc-PMAIP1-2:1	XLOC_012699	linc-CDH20-1	NA	NA	NA	inter
CUST_15994_PI429285431	2.3066657	A	1.6277021	A	1.60098922695248	0	lncRNA	17691-1_{1..231}	lnc-ADRA2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADRA2A-1:1	chr10	112877718	112877948	+	lnc-ADRA2A-1	lnc-ADRA2A-1:1	XLOC_008615	linc-TECTB-2	NA	NA	NA	inter
CUST_37208_PI429285431	2.9910665	A	3.7550178	P	0.588881272895871	0	lncRNA	38321-1_{1..2341}	n345644|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1193|NULL|-1.6787300|-0.2974226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345644|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1193|NULL|-1.6787300|-0.2974226	chr4	 84138570	 84140910	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6107_PI429285431	1.223831	A	1.1248319	A	1.07103015504787	0	lncRNA	6033-1_{1..603}	"transcript_id ""ENST00000584898.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584898.1"" | genecode_v17"	chr18	 19561082	 19561684	+	ENSG00000265758.1	ENST00000584898.1	RP11-595B24.1	RP11-595B24.1-001	NA	NA	NA	inter
CUST_5951_PI429285431	1.5439805	A	3.133115	P	0.332370789238731	0	lncRNA	5880-1_{1..628}	"transcript_id ""ENST00000455460.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455460.1"" | genecode_v17"	chr17	 67957848	 67958475	+	ENSG00000237560.1	ENST00000455460.1	AC004562.1	AC004562.1-002	NA	NA	NA	inter
CUST_39009_PI429285431	12.419902	P	12.64269	P	0.856907865730691	0	lncRNA	39989-1_{1..2946}	n385315|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wmd.1||-0.2899650|-0.3231766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385315|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wmd.1||-0.2899650|-0.3231766	chr7	155434167	155437112	-	NA	NA	NA	NA	RBM33	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40chr7:155437203-155447113"	NA	inter
CUST_51152_PI429285431	4.0235834	P	3.3181617	P	1.63062122600751	0	lncRNA	54774-1_{1..890}	hg19_lincRNAsTranscripts_TCONS_l2_00007972 range=chr14:21189090-21190291 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007972 range=chr14:21189090-21190291 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr14	 21189090	 21189979	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003112	1.0073678	A	1.6311517	A	0.648966584313902	0	lncRNA	TCONS_00006483	NA	NA	NA	NA	XLOC_003087	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003087), lincRNA [TCONS_00006483]"	chr3:39018519-39018460	hs|3p22.2	Agilent_HUMAN_G3V2	TCONS_00006483	TCONS_00006483	chr3	 39018460	 39018519	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011580	9.018659	P	9.15169	P	0.911913570509315	0	lncRNA	TCONS_l2_00011143	NA	NA	NA	NA	XLOC_l2_006025	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006025), lincRNA [TCONS_l2_00011143]"	chr17:20516420-20516361	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00011143	TCONS_l2_00011143	chr17	 20516361	 20516420	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37549_PI429285431	5.9317584	P	5.2917004	P	1.5583918093652	0	lncRNA	38653-1_{1..463}	n346025|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1575|NULL|-1.5754700|-0.3036930	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346025|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1575|NULL|-1.5754700|-0.3036930	chr15	 23201588	 23202050	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1426_PI429285431	0.9920807	A	0.92948955	A	1.04433976211097	0	lncRNA	1415-1_{1..710}	"transcript_id ""ENST00000596110.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596110.1"" | genecode_v17"	chr3	107574011	107574720	-	ENSG00000241469.2	ENST00000596110.1	LINC00635	LINC00635-012	NA	NA	NA	inter
CUST_31520_PI429285431	1.8263354	A	1.019793	A	1.74901468208688	0	lncRNA	33279-1_{1..580}	n338007|BC042082|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|394|NULL|-1.0510700|-0.3470739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n338007|BC042082|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|394|NULL|-1.0510700|-0.3470739	chr1	 72259914	 72260493	-	NA	NA	NA	NA	NEGR1	NA	chr1:72249914-72312695	inner
CUST_34952_PI429285431	3.274495	P	3.4017162	P	0.915593293086344	0	lncRNA	36369-1_{1..1575}	n341870|AK097448|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4350|NULL|-0.8251870|-0.2681730	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341870|AK097448|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4350|NULL|-0.8251870|-0.2681730	chr6	 47761742	 47763316	-	NA	NA	NA	NA	OPN5	"hg19_refFlat_OPN5:range=chr6:47749803-477917275'pad=0,hg19_refFlat_OPN5:range=chr6:47749803-477917275'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.20chr6:47751742-47773317"	NA	inter
CUST_35031_PI429285431	1.0767947	A	1.4813656	A	0.755460955709536	0	lncRNA	36444-1_{1..1297}	n341974|BC037383|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4455|NULL|-1.1439100|-0.3362643	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341974|BC037383|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4455|NULL|-1.1439100|-0.3362643	chr12	 81156932	 81158228	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5643_PI429285431	1.0346454	A	1.065965	A	0.978524853931621	0	lncRNA	5571-1_{1..466}	"transcript_id ""ENST00000561634.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561634.1"" | genecode_v17"	chr16	 80601455	 80601920	-	ENSG00000260737.1	ENST00000561634.1	RP11-18F14.1	RP11-18F14.1-002	NA	NA	NA	inter
CUST_18983_PI429285431	1.0118352	A	1.484354	A	0.720705220099578	0	lncRNA	20675-1_{1..766}	lnc-NKX2-4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKX2-4-2:2	chr20	 21139260	 21140025	-	lnc-NKX2-4-2	lnc-NKX2-4-2:2	ENSG00000228604	RP5-872K7.7	PLK1S1	NA	chr20:21129260-21149382	inner
CUST_10594_PI429285431	1.6139414	A	1.2121274	A	1.32116806258905	0	lncRNA	12124-1_{1..270}	lnc-CAMTA1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CAMTA1-1:3	chr1	  6787493	  6787762	+	lnc-CAMTA1-1	lnc-CAMTA1-1:3	XLOC_000041	linc-CAMTA1	NA	NA	NA	inter
CUST_38046_PI429285431	0.922492	A	1.4000448	A	0.718194843559154	0	lncRNA	39125-1_{1..342}	n377619|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030002||-1.2317100|-0.3663541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377619|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030002||-1.2317100|-0.3663541	chr6	  1019089	  1019430	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003660	1.036762	A	1.0266497	A	1.00703393495881	0	lncRNA	THC2701857	NA	NA	NA	NA	XLOC_003719	NA	NA	THC2701857	NA	"BROAD Institute lincRNA (XLOC_003719), lincRNA [TCONS_00008276]"	chr4:146521900-146521959	hs|4q31.21	Agilent_HUMAN_G3V2	THC2701857	THC2701857	chr4	146521900	146521959	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5114_PI429285431	1.2249243	A	0.9338534	A	1.22354816987093	0	lncRNA	5054-1_{1..1967}	"transcript_id ""ENST00000383019.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000383019.2"" | genecode_v17"	chr15	 26147507	 26149473	+	ENSG00000206187.3	ENST00000383019.2	RP11-1084I9.1	RP11-1084I9.1-001	NA	NA	NA	inter
CUST_45730_PI429285431	0.9182316	A	0.91152424	A	1.00466001191415	0	lncRNA	50085-13_{36001..39000}	"gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	Chr11	  2665558	  2668557	-	10984	NR_002728.3	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.02;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0,hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_18589_PI429285431	5.279351	P	4.268137	P	2.0156064806047	0	lncRNA	20296-1_{1..1838}	lnc-AL592284.1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL592284.1-1:8	chr1	144619883	144621720	+	lnc-AL592284.1-1	lnc-AL592284.1-1:8	ENSG00000225241	NBPF8	NBPF9	"hg19_refFlat_PFN1:range=chr17:4849195-48516895'pad=0,hg19_refFlat_PFN1:range=chr17:4849195-48516895'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr1:144614959-144621685"	NA	inner
CUST_23750_PI429285431	0.9218985	A	1.1127585	A	0.876083326598561	0	lncRNA	25313-1_{1..318}	lnc-UBE2NL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-UBE2NL-1:1	chrX	142911112	142911429	+	lnc-UBE2NL-1	lnc-UBE2NL-1:1	ENSG00000225970.1	RP3-526F5.2	NA	NA	NA	inter
CUST_44356_PI429285431	7.556025	P	7.538009	P	1.01256603700492	0	lncRNA	48976-2_{3001..4889}	"gi|112734776|ref|NR_003132.1| Homo sapiens heat shock protein 90kDa alpha (cytosolic), class B member 2, pseudogene (HSP90AB2P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|112734776|ref|NR_003132.1| Homo sapiens heat shock protein 90kDa alpha (cytosolic), class B member 2, pseudogene (HSP90AB2P), non-coding RNA"	NA	NA	NA	NA	NA	NR_003132.1	NA	NA	NA	NA	NA	Unknown
CUST_10459_PI429285431	6.6642094	P	7.0651274	P	0.757376204515958	0	lncRNA	11985-1_{1..763}	lnc-GDAP2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GDAP2-1:4	chr1	118148179	118148941	-	lnc-GDAP2-1	lnc-GDAP2-1:4	XLOC_000980	linc-VTCN1-2	FAM46C	NA	chr1:118148604-118158392	inter
CUST_173_PI429285431	0.92753786	A	2.5689554	A	0.320541367248357	0	lncRNA	163-1_{1..610}	"transcript_id ""ENST00000430540.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430540.1"" | genecode_v17"	chr1	 18044182	 18044791	+	ENSG00000236648.1	ENST00000430540.1	RP11-473A10.2	RP11-473A10.2-001	NA	NA	NA	inter
CUST_41140_PI429285431	10.074113	P	10.117444	P	0.970411800981414	0	lncRNA	41931-1_{1..86}	ENST00000583672 ncrna:miRNA chromosome:GRCh37:HG104_HG975_PATCH:144895127:144895212:-1 gene:ENSG00000265563 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583672 ncrna:miRNA chromosome:GRCh37:HG104_HG975_PATCH:144895127:144895212:-1 gene:ENSG00000265563 gene_biotype:miRNA transcript_biotype:miRNA	chrHG104_HG975_PATCH	144895127	144895212	-	ENSG00000265563	ENST00000583672	NA	NA	NA	NA	NA	Unknown
CUST_18185_PI429285431	0.9192634	A	0.9109843	A	1.00575513233001	0	lncRNA	19921-1_{1..2510}	lnc-RP3-324N14.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP3-324N14.2.1-1:1	chr6	131156010	131158519	+	lnc-RP3-324N14.2.1-1	lnc-RP3-324N14.2.1-1:1	ENSG00000256162	AL109938.1	EPB41L2	NA	chr6:131160487-131168273	inner
CUST_31517_PI429285431	7.1454244	P	6.6430397	P	1.41655311701632	0	lncRNA	33277-1_{1..703}	n338004|BC015159|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|391|NULL|-0.6471050|-0.2260470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n338004|BC015159|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|391|NULL|-0.6471050|-0.2260470	chr22	 27618852	 27619554	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35960_PI429285431	3.7965345	P	4.4322405	P	0.643625771739528	0	lncRNA	37312-1_{1..436}	n344587|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_135|NULL|-1.6049300|-0.3901243	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344587|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_135|NULL|-1.6049300|-0.3901243	chr21	 35339437	 35339872	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38149_PI429285431	7.8397717	P	7.229454	P	1.52659534787464	0	lncRNA	39221-1_{1..2669}	n381353|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hog.1||0.5790050|-0.3720425	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n381353|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hog.1||0.5790050|-0.3720425	chr1	224189608	224192276	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24843_PI429285431	0.9297263	A	1.201587	A	0.828250629546503	0	lncRNA	26383-1_{1..914}	lnc-MIER3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MIER3-1:1	chr5	 56206003	 56206916	-	lnc-MIER3-1	lnc-MIER3-1:1	ENSG00000225230.1	AC008937.3	MIER3	NA	chr5:56215429-56216541	inner
CUST_49654_PI429285431	2.300112	A	1.0858352	A	2.32024443568982	0	lncRNA	53436-2_{3001..3356}	hg19_lincRNAsTranscripts_TCONS_l2_00025990 range=chr7:66311611-66351433 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025990 range=chr7:66311611-66351433 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 66314611	 66314966	+	NA	NA	NA	NA	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20"	NA	inter
CUST_1573_PI429285431	0.9867646	A	0.92900264	A	1.04084984666832	0	lncRNA	1562-1_{1..640}	"transcript_id ""ENST00000418585.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418585.1"" | genecode_v17"	chr3	178052810	178053449	-	ENSG00000223930.1	ENST00000418585.1	RP11-33A14.1	RP11-33A14.1-004	NA	NA	NA	inter
CUST_32418_PI429285431	4.274672	P	4.1663604	P	1.07796594401175	0	lncRNA	34094-1_{1..1850}	n339013|BC017260|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1442|NULL|-0.9563260|-0.0975575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339013|BC017260|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1442|NULL|-0.9563260|-0.0975575	chr16	  1486822	  1488671	+	NA	NA	NA	NA	C16orf91	"hg19_refFlat_CCDC154:range=chr16:1484409-14943235'pad=0,hg19_refFlat_CCDC154:range=chr16:1484409-14943235'pad=0 3'pad=0 strand=- repeatMasking=none,-102.20chr16:1476822-1479345"	NA	inner
CUST_18875_PI429285431	1.8648819	A	0.8922733	A	1.96238566455594	0	lncRNA	20568-1_{1..496}	lnc-PTPN14-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPN14-3:3	chr1	214139414	214139909	-	lnc-PTPN14-3	lnc-PTPN14-3:3	ENSG00000230461	RP11-478J18.1	NA	NA	NA	inter
CUST_38540_PI429285431	7.496129	P	7.572766	P	0.948265530505518	0	lncRNA	39549-2_{3001..6000}	n383242|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jxg.1||2.7885800|-0.1503144	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383242|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jxg.1||2.7885800|-0.1503144	chr17	 77909142	 77912141	-	NA	NA	NA	NA	TBC1D16	NA	chr17:77913819-77922277	inner
CUST_26996_PI429285431	0.92436504	A	0.9270669	A	0.9981289659294	0	lncRNA	28524-1_{1..719}	n324098|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000143914|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000143914|-1.2739100|-0.2544855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324098|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000143914|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000143914|-1.2739100|-0.2544855	chr9	 44763708	 44764426	+	NA	NA	NA	NA	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30"	NA	inter
CUST_27523_PI429285431	6.2699876	P	6.4381804	P	0.889956792568311	0	lncRNA	29099-1_{1..346}	n324708|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320286|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320286|-0.0480895|-0.1979978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324708|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320286|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320286|-0.0480895|-0.1979978	chr22	 21998802	 21999147	+	NA	NA	NA	NA	CCDC116	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20chr22:21988802-21991616"	NA	inter
CUST_20640_PI429285431	0.9233977	A	1.2051754	A	0.822576807026311	0	lncRNA	22279-1_{1..581}	lnc-GPR83-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR83-1:1	chr11	 94206710	 94207290	-	lnc-GPR83-1	lnc-GPR83-1:1	ENSG00000255893.1	RP11-685N10.1	MRE11A	NA	chr11:94196710-94216736	inner
CUST_44481_PI429285431	0.91434574	A	0.90527	A	1.00631065238123	0	lncRNA	49084-1_{1..1601}	"gi|341915279|ref|XR_132507.1| PREDICTED: Homo sapiens uncharacterized LOC100506766 (LOC100506766), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915279|ref|XR_132507.1| PREDICTED: Homo sapiens uncharacterized LOC100506766 (LOC100506766), misc_RNA"	NA	NA	NA	NA	NA	XR_132507.1	NA	NA	NA	NA	NA	Unknown
CUST_6477_PI429285431	1.2624488	A	1.4839996	A	0.857643032270011	0	lncRNA	6418-1_{1..912}	"transcript_id ""ENST00000601669.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601669.2"" | genecode_v17"	chr19	 35890433	 35891344	+	ENSG00000205786.4	ENST00000601669.2	AC002511.1	AC002511.1-003	NA	NA	NA	inter
CUST_23807_PI429285431	1.5874426	A	2.684333	A	0.4675231147579	0	lncRNA	25372-1_{1..561}	lnc-OR4N4-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR4N4-1:6	chr15	 22347583	 22348143	+	lnc-OR4N4-1	lnc-OR4N4-1:6	ENSG00000259176.1	RP11-69H14.6	OR4M2	NA	chr15:22337583-22357852	inter
CUST_9559_PI429285431	3.8930042	P	3.756552	P	1.09919869769637	0	lncRNA	11074-1_{1..832}	lnc-CLEC2D-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLEC2D-2:1	chr12	  9613920	  9614751	+	lnc-CLEC2D-2	lnc-CLEC2D-2:1	XLOC_009653	linc-CLEC2D-2	OVOS	NA	chr12:9613794-9624245	inter
CUST_20682_PI429285431	1.0683371	A	0.9193373	A	1.10880048989067	0	lncRNA	22318-2_{3001..5147}	lnc-TTC30B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTC30B-1:1	chr2	178260301	178262447	-	lnc-TTC30B-1	lnc-TTC30B-1:1	ENSG00000213963.2	AC074286.1	AGPS	NA	chr2:178257471-178267419	inter
CUST_29623_PI429285431	2.8805056	A	1.3717384	A	2.84566769520821	0	lncRNA	31384-1_{1..723}	n333184|AF432264|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079611|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079611|2.5636600|-0.1949476	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333184|AF432264|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079611|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079611|2.5636600|-0.1949476	chr21	 33709720	 33710442	-	NA	NA	NA	NA	URB1	NA	chr21:33699720-33727866	inner
CUST_45618_PI429285431	5.359459	P	4.900295	P	1.37474496238748	0	lncRNA	50003-1_{1..3000}	"gi|335892805|ref|NR_038392.1| Homo sapiens anaphase promoting complex subunit 16 (ANAPC16), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|335892805|ref|NR_038392.1| Homo sapiens anaphase promoting complex subunit 16 (ANAPC16), transcript variant 6, non-coding RNA"	Chr10	 73975758	 73978757	+	119504	NR_038392.1	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.76;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.52;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.21;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90"	NA	inter
LNCA_21_P0010233	0.98093367	A	0.9223108	A	1.04147114599416	0	lncRNA	TCONS_00028995	NA	NA	NA	NA	XLOC_013914	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013914), lincRNA [TCONS_00028995]"	chr21:33917273-33919284	hs|21q22.11	Agilent_HUMAN_G3V2	TCONS_00028995	TCONS_00028995	chr21	 33917273	 33919284	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47971_PI429285431	0.91273046	A	0.9101764	A	1.00177190746408	0	lncRNA	51861-2_{3001..5980}	"gi|410172711|ref|XR_171936.1| PREDICTED: Homo sapiens uncharacterized LOC100129223 (LOC100129223), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410172711|ref|XR_171936.1| PREDICTED: Homo sapiens uncharacterized LOC100129223 (LOC100129223), misc_RNA"	NA	NA	NA	NA	NA	XR_171936.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007662	10.257688	P	9.731288	P	1.4403306075988	0	lncRNA	TCONS_00020641	NA	NA	NA	NA	XLOC_009943	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009943), lincRNA [TCONS_00020641]"	chr12:127630422-127630481	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020641	TCONS_00020641	chr12	127630422	127630481	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22422_PI429285431	1.0453349	A	0.90507257	A	1.10210549713742	0	lncRNA	24011-1_{1..1838}	lnc-ATP6V1E1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATP6V1E1-1:1	chr22	 18070633	 18072470	-	lnc-ATP6V1E1-1	lnc-ATP6V1E1-1:1	ENSG00000236754.1	AC004019.13	ATP6V1E1	"hg19_refFlat_SLC25A18:range=chr22:18062711-180730025'pad=0,hg19_refFlat_SLC25A18:range=chr22:18062711-180730025'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70chr22:18074902-18081958"	NA	inner
CUST_5394_PI429285431	5.053111	P	5.552023	P	0.707640242744763	0	lncRNA	5328-1_{1..614}	"transcript_id ""ENST00000564438.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564438.1"" | genecode_v17"	chr16	  2034878	  2035491	-	ENSG00000261790.1	ENST00000564438.1	AC005606.14	AC005606.14-001	GFER	"hg19_refFlat_GFER:range=chr16:2034220-20360295'pad=0,hg19_refFlat_GFER:range=chr16:2034220-20360295'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40chr16:2034150-2037749"	NA	inner
CUST_4348_PI429285431	0.9279968	A	0.92073566	A	1.00504572573384	0	lncRNA	4303-1_{1..742}	"transcript_id ""ENST00000550279.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550279.1"" | genecode_v17"	chr12	 83565369	 83566110	+	ENSG00000258338.1	ENST00000550279.1	RP11-87P13.2	RP11-87P13.2-001	NA	NA	NA	inter
CUST_40197_PI429285431	3.9554517	P	3.6532884	P	1.2329918810688	0	lncRNA	41029-1_{1..1220}	n408017|NR_027776|lncRNA|Homosapiens||RefGeneNoncode|NR_027776||2.6847500|-0.2300220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408017|NR_027776|lncRNA|Homosapiens||RefGeneNoncode|NR_027776||2.6847500|-0.2300220	chr7	 74306893	 74308112	+	NA	NA	NA	NA	STAG3L2	NA	chr7:74299267-74306731	inter
CUST_24401_PI429285431	0.91703093	A	0.9033688	A	1.00951484795551	0	lncRNA	25954-1_{1..1571}	lnc-KCNMB1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNMB1-2:1	chr5	170108157	170109727	-	lnc-KCNMB1-2	lnc-KCNMB1-2:1	ENSG00000253591.1	CTC-265N9.1	KCNIP1	NA	chr5:170098157-170118441	inner
CUST_19976_PI429285431	0.92977875	A	0.9130374	A	1.01167180969758	0	lncRNA	21629-1_{1..469}	lnc-MMRN1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MMRN1-2:5	chr4	 90640977	 90641445	+	lnc-MMRN1-2	lnc-MMRN1-2:5	ENSG00000251095.1	RP11-115D19.1	SNCA	NA	chr4:90645250-90651190	inter
CUST_9888_PI429285431	3.6749191	P	3.8916252	P	0.860527916024009	0	lncRNA	11412-1_{1..892}	lnc-EBF3-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EBF3-7:1	chr10	130804357	130805248	-	lnc-EBF3-7	lnc-EBF3-7:1	XLOC_008991	linc-MKI67-3	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30"	NA	inter
CUST_2680_PI429285431	9.855239	P	9.457193	P	1.31772196632655	0	lncRNA	2666-1_{1..424}	"transcript_id ""ENST00000432358.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432358.1"" | genecode_v17"	chr6	158703295	158703718	+	ENSG00000236537.1	ENST00000432358.1	RP11-732M18.3	RP11-732M18.3-001	TULP4	NA	chr6:158733692-158743390	inter
CUST_10973_PI429285431	1.6369002	A	1.438735	A	1.14723838457966	0	lncRNA	12516-1_{1..477}	lnc-RP11-210M15.2.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-210M15.2.1-1:2	chr15	 80696051	 80696527	-	lnc-RP11-210M15.2.1-1	lnc-RP11-210M15.2.1-1:2	XLOC_011546	linc-BCL2A1-3	ARNT2	NA	chr15:80696692-80706340	inter
CUST_36317_PI429285431	0.91883904	A	1.1069424	A	0.877758909467305	0	lncRNA	37549-1_{1..2007}	n344844|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_393|NULL|-1.3224200|-0.3797789	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344844|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_393|NULL|-1.3224200|-0.3797789	chr5	114539749	114541755	-	NA	NA	NA	NA	PGGT1B	NA	chr5:114546527-114551945	inter
CUST_24136_PI429285431	4.0087667	P	4.1697445	P	0.894418664872536	0	lncRNA	25688-1_{1..553}	lnc-SIGLEC14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SIGLEC14-1:1	chr19	 52148730	 52149282	-	lnc-SIGLEC14-1	lnc-SIGLEC14-1:1	ENSG00000258669.1	AC018755.13	SIGLEC14	NA	chr19:52138730-52150132	inner
CUST_24124_PI429285431	0.90167856	A	1.5750338	A	0.627046683284741	0	lncRNA	25674-1_{1..482}	lnc-THOC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THOC2-1:1	chrX	123007659	123008140	-	lnc-THOC2-1	lnc-THOC2-1:1	ENSG00000237331.1	XIAP-AS1	XIAP	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80chrX:122997659-123017782"	NA	inner
CUST_29168_PI429285431	11.90403	P	11.628473	P	1.21046133753503	0	lncRNA	30911-1_{1..615}	n326679|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007790|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007790|-0.3518190|-0.0956665	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326679|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007790|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007790|-0.3518190|-0.0956665	chr1	 22223073	 22223687	-	NA	NA	NA	NA	HSPG2	NA	chr1:22213073-22234048	inner
CUST_27581_PI429285431	0.9121518	A	0.9004436	A	1.00814852580096	0	lncRNA	29159-1_{1..580}	n324783|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000195055|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000195055|-1.2474900|-0.3917317	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324783|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000195055|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000195055|-1.2474900|-0.3917317	chr21	 41436976	 41437555	-	NA	NA	NA	NA	DSCAM	NA	chr21:41426976-41451230	inter
CUST_44069_PI429285431	10.593767	P	10.40721	P	1.13804452268513	0	lncRNA	48740-2_{3001..3526}	"gi|299829179|ref|NR_033879.1| Homo sapiens uncharacterized LOC348761 (LOC348761), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299829179|ref|NR_033879.1| Homo sapiens uncharacterized LOC348761 (LOC348761), non-coding RNA"	Chr2	231852083	231852608	-	348761	NR_033879.1	NA	NA	NA	NA	NA	inter
CUST_5821_PI429285431	1.3267292	A	1.6798253	A	0.782902144277221	0	lncRNA	5748-1_{1..467}	"transcript_id ""ENST00000591886.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591886.1"" | genecode_v17"	chr17	 33640521	 33640987	+	ENSG00000267364.1	ENST00000591886.1	RP11-47L3.1	RP11-47L3.1-002	NA	NA	NA	inter
CUST_47206_PI429285431	8.253103	P	8.80676	P	0.681290974643794	0	lncRNA	51280-1_{1..2050}	"gi|388556522|ref|NR_049780.1| Homo sapiens zinc finger protein 837 (ZNF837), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|388556522|ref|NR_049780.1| Homo sapiens zinc finger protein 837 (ZNF837), transcript variant 1, non-coding RNA"	Chr19	 58878990	 58881039	-	116412	NR_049780.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004793	2.503639	A	3.207856	P	0.613775515235507	0	lncRNA	ENST00000436953	NA	NA	NA	NA	XLOC_005883	NA	ENST00000436953	THC2720339	NA	"BROAD Institute lincRNA (XLOC_005883), lincRNA [TCONS_00011598]"	chr6:153625824-153625765	hs|6q25.2	Agilent_HUMAN_G3V2	ENST00000436953	ENST00000436953	chr6	153625765	153625824	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33665_PI429285431	0.90645945	A	0.8954912	A	1.00763158479199	0	lncRNA	35227-1_{1..734}	n340428|BC033402|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2889|NULL|-1.2207800|-0.3866311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340428|BC033402|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2889|NULL|-1.2207800|-0.3866311	chr5	 36221156	 36221889	+	NA	NA	NA	NA	NADKD1	NA	chr5:36211156-36232004	inner
CUST_46156_PI429285431	1.0371865	A	1.0972184	A	0.959242908891852	0	lncRNA	50405-1_{1..2506}	"gi|330864794|ref|NR_027918.2| Homo sapiens coiled-coil domain containing 62 (CCDC62), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|330864794|ref|NR_027918.2| Homo sapiens coiled-coil domain containing 62 (CCDC62), transcript variant 3, non-coding RNA"	Chr12	123259056	123261561	+	84660	NR_027918.2	NA	NA	NA	NA	NA	inter
CUST_14499_PI429285431	4.9344034	P	4.9178414	P	1.01154605057577	0	lncRNA	16165-2_{3001..3860}	lnc-ARRDC3-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARRDC3-1:7	chr5	 90612897	 90613756	-	lnc-ARRDC3-1	lnc-ARRDC3-1:7	XLOC_004924	linc-LYSMD3-2	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_3577_PI429285431	0.9203947	A	0.950621	A	0.979266678544362	0	lncRNA	3547-1_{1..484}	"transcript_id ""ENST00000454424.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454424.1"" | genecode_v17"	chr10	  2054847	  2055330	-	ENSG00000234962.1	ENST00000454424.1	LINC00700	LINC00700-002	NA	NA	NA	inter
CUST_51072_PI429285431	6.0559297	P	5.9469404	P	1.07847243298544	0	lncRNA	54710-1_{1..210}	hg19_lincRNAsTranscripts_TCONS_l2_00007126 range=chr13:38633779-38663794 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007126 range=chr13:38633779-38663794 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 38633779	 38633988	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41087_PI429285431	4.23643	P	4.8300614	P	0.662672795852667	0	lncRNA	41781-1_{1..110}	ENST00000583027 ncrna:miRNA chromosome:GRCh37:13:42142422:42142531:-1 gene:ENSG00000264190 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583027 ncrna:miRNA chromosome:GRCh37:13:42142422:42142531:-1 gene:ENSG00000264190 gene_biotype:miRNA transcript_biotype:miRNA	chr13	 42142422	 42142531	-	ENSG00000264190	ENST00000583027	NA	NA	KIAA0564	NA	chr13:42140961-42152531	inner
CUST_46766_PI429285431	13.04223	P	12.754786	P	1.22047606295635	0	lncRNA	50916-1_{1..928}	"gi|343962622|ref|NR_045021.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 24, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|343962622|ref|NR_045021.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 24, non-coding RNA"	Chr17	 16342301	 16343228	+	125144	NR_045021.1	NA	NA	NA	NA	NA	inter
CUST_44492_PI429285431	5.6022406	P	4.780788	P	1.76718441430111	0	lncRNA	49093-1_{1..900}	"gi|304284844|ref|NR_036553.1| Homo sapiens FAST kinase domains 3 (FASTKD3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|304284844|ref|NR_036553.1| Homo sapiens FAST kinase domains 3 (FASTKD3), transcript variant 2, non-coding RNA"	Chr5	  7859272	  7860171	-	79072	NR_036553.1	NA	NA	NA	NA	NA	inter
CUST_12753_PI429285431	8.425054	P	8.842518	P	0.748739618628661	0	lncRNA	14377-2_{3001..4867}	lnc-ZNF140-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF140-1:1	chr12	133699876	133701742	+	lnc-ZNF140-1	lnc-ZNF140-1:1	XLOC_009969	linc-ZNF10	ZNF10	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_ZNF442:range=chr19:12460515-124744455'pad=0,hg19_refFlat_ZNF442:range=chr19:12460515-124744455'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF625:range=chr19:12256112-122673735'pad=0,hg19_refFlat_ZNF625:range=chr19:12256112-122673735'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80chr12:133702065-133708651"	NA	inter
CUST_22015_PI429285431	1.3924582	A	1.0452824	A	1.27206800549547	0	lncRNA	23624-1_{1..593}	lnc-SAP30-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:2	chr4	174459214	174459806	+	lnc-SAP30-5	lnc-SAP30-5:2	ENSG00000237125.3	RP11-471J12.1	HAND2	"hg19_refFlat_HAND2:range=chr4:174448428-1744504405'pad=0,hg19_refFlat_HAND2:range=chr4:174448428-1744504405'pad=0 3'pad=0 strand=- repeatMasking=none,-95.70chr4:174449214-174451378"	NA	inter
CUST_18024_PI429285431	7.154106	P	7.154726	P	0.999570341077895	0	lncRNA	19758-1_{1..505}	lnc-TLX1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TLX1-1:3	chr10	102951067	102951571	+	lnc-TLX1-1	lnc-TLX1-1:3	XLOC_008585	linc-BTRC-3	NA	NA	NA	inter
CUST_24378_PI429285431	5.14064	P	5.0833874	P	1.040482427579	0	lncRNA	25931-1_{1..2600}	lnc-SCCPDH-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCCPDH-1:3	chr1	246955359	246957958	+	lnc-SCCPDH-1	lnc-SCCPDH-1:3	ENSG00000227953.2	RP11-439E19.3	LOC100130097	NA	chr1:246945359-246948062	inter
CUST_5806_PI429285431	10.958315	P	11.079821	P	0.919227586641406	0	lncRNA	5732-1_{1..397}	"transcript_id ""ENST00000585025.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585025.1"" | genecode_v17"	chr17	 30157750	 30158146	+	ENSG00000265046.1	ENST00000585025.1	CTC-542B22.1	CTC-542B22.1-001	NA	NA	NA	inter
CUST_41201_PI429285431	4.348286	P	4.383327	P	0.976004023290175	0	lncRNA	42076-1_{1..75}	ENST00000362135 ncrna:miRNA chromosome:GRCh37:14:101377476:101377550:1 gene:ENSG00000199005 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362135 ncrna:miRNA chromosome:GRCh37:14:101377476:101377550:1 gene:ENSG00000199005 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101377476	101377550	+	ENSG00000199005	ENST00000362135	NA	NA	NA	NA	NA	inter
CUST_34016_PI429285431	0.9279773	A	1.7818425	A	0.553300372437321	0	lncRNA	35550-1_{1..1837}	n340831|CR617623|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3295|NULL|-1.2443400|-0.2661340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340831|CR617623|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3295|NULL|-1.2443400|-0.2661340	chr6	  6685380	  6687216	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8612_PI429285431	6.6471148	P	4.7600374	P	3.69885154900737	0	lncRNA	10165-2_{3001..4892}	lnc-OSBP2-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OSBP2-2:8	chr22	 31374156	 31376047	+	lnc-OSBP2-2	lnc-OSBP2-2:8	ENSG00000253352	XLOC_014209	MORC2	NA	chr22:31361156-31364187	inter
CUST_31765_PI429285431	5.6877604	P	4.792608	P	1.85980633666465	0	lncRNA	33505-2_{3001..3240}	n338305|BX648637|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|699|NULL|0.1805560|-0.1793225	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338305|BX648637|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|699|NULL|0.1805560|-0.1793225	chr19	 10399476	 10399715	-	NA	NA	NA	NA	ICAM5	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ICAM4:range=chr19:10397689-103987805'pad=0,hg19_refFlat_ICAM4:range=chr19:10397689-103987805'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ICAM4:range=chr19:10397689-103985315'pad=0,hg19_refFlat_ICAM4:range=chr19:10397689-103985315'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ICAM4:range=chr19:10397689-103988605'pad=0,hg19_refFlat_ICAM4:range=chr19:10397689-103988605'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90chr19:10400655-10407454"	NA	inner
CUST_3857_PI429285431	3.9705706	P	3.6384442	P	1.25886746284003	0	lncRNA	3826-1_{1..899}	"transcript_id ""ENST00000476130.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000476130.2"" | genecode_v17"	chr11	 12088476	 12089374	+	ENSG00000254991.1	ENST00000476130.2	RP13-631K18.3	RP13-631K18.3-001	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
CUST_39846_PI429285431	4.0501823	P	0.9074495	A	8.83195486893555	0	lncRNA	40747-2_{3001..4862}	n406463|NR_023356|lncRNA|Homosapiens||RefGeneNoncode|NR_023356||6.3265200|-0.3198510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406463|NR_023356|lncRNA|Homosapiens||RefGeneNoncode|NR_023356||6.3265200|-0.3198510	chr11	 95569043	 95570904	-	NA	NA	NA	NA	CEP57	NA	chr11:95556043-95565854	inner
CUST_24855_PI429285431	1.2994534	A	1.1810529	A	1.08553067928575	0	lncRNA	26395-1_{1..829}	lnc-C16orf61-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C16orf61-2:1	chr16	 80661448	 80662276	-	lnc-C16orf61-2	lnc-C16orf61-2:1	ENSG00000260064.1	RP11-18F14.4	CDYL2	NA	chr16:80651448-80672276	inner
CUST_33511_PI429285431	0.91646665	A	0.9036593	A	1.00891689932827	0	lncRNA	35082-2_{3001..4194}	n340249|AL832220|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2710|NULL|-1.0433800|-0.2808823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340249|AL832220|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2710|NULL|-1.0433800|-0.2808823	chr4	146976755	146977948	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19766_PI429285431	1.7711469	A	1.5284293	A	1.18321939008294	0	lncRNA	21424-1_{1..611}	lnc-EDAR-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-EDAR-6:1	chr2	108834151	108834761	-	lnc-EDAR-6	lnc-EDAR-6:1	ENSG00000225328.1	AC019100.3	NA	NA	NA	inter
CUST_45355_PI429285431	3.4681065	A	2.760229	A	1.6333992835334	0	lncRNA	49792-1_{1..1264}	"gi|397139317|ref|XR_132890.2| PREDICTED: Homo sapiens uncharacterized LOC100132249 (LOC100132249), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139317|ref|XR_132890.2| PREDICTED: Homo sapiens uncharacterized LOC100132249 (LOC100132249), misc_RNA"	Chr9	 66492962	 66494225	-	100132249	XR_132890.3	NA	NA	NA	NA	NA	inter
CUST_31790_PI429285431	5.559685	P	4.6676326	P	1.8558143565889	0	lncRNA	33529-1_{1..624}	n338331|AF088035|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|725|NULL|-1.0080600|-0.3155725	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338331|AF088035|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|725|NULL|-1.0080600|-0.3155725	chr1	161929296	161929919	+	NA	NA	NA	NA	ATF6	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40chr1:161919296-161928852"	NA	inner
CUST_19849_PI429285431	3.174556	P	3.1006	A	1.05259905155304	0	lncRNA	21506-1_{1..513}	lnc-STT3B-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STT3B-1:6	chr3	 31762884	 31763396	+	lnc-STT3B-1	lnc-STT3B-1:6	ENSG00000232490.2	OSBPL10-AS1	OSBPL10	NA	chr3:31752884-31773144	inner
CUST_37861_PI429285431	5.558134	P	5.12261	P	1.35240194855906	0	lncRNA	38954-1_{1..1616}	n346396|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1946|NULL|-1.3021000|-0.1165086	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346396|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1946|NULL|-1.3021000|-0.1165086	chr7	 55750467	 55752082	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50923_PI429285431	1.3618748	A	1.1836866	A	1.13146205278264	0	lncRNA	54564-1_{1..2761}	hg19_lincRNAsTranscripts_TCONS_l2_00005523 range=chr12:11706439-11712457 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005523 range=chr12:11706439-11712457 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 11706439	 11709199	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25171_PI429285431	2.1023324	A	2.5932226	A	0.711585885622257	0	lncRNA	26703-5_{12001..15000}	lnc-ZNF862-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:2	chr7	149542900	149545899	+	lnc-ZNF862-1	lnc-ZNF862-1:2	ENSG00000197558.7	SSPO	ZNF862	NA	chr7:149535509-149541054	inner
CUST_8930_PI429285431	0.9004005	A	0.8988309	A	1.00108855586193	0	lncRNA	10465-1_{1..437}	lnc-ABLIM3-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABLIM3-1:5	chr5	148486331	148486767	+	lnc-ABLIM3-1	lnc-ABLIM3-1:5	ENSG00000250072	CTC-529P8.1	NA	NA	NA	inter
CUST_46032_PI429285431	3.369257	P	3.3701727	P	0.999365486515636	0	lncRNA	50312-2_{3001..3162}	"gi|288541338|ref|NR_033267.1| Homo sapiens FGFR1 oncogene partner 2 pseudogene (LOC100335030), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|288541338|ref|NR_033267.1| Homo sapiens FGFR1 oncogene partner 2 pseudogene (LOC100335030), non-coding RNA"	Chr12	 49785957	 49786118	+	100335030	NR_033267.1	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20"	NA	inter
CUST_38878_PI429285431	10.227777	P	9.145722	P	2.11704949669079	0	lncRNA	39865-1_{1..2883}	n384785|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003mjv.3||-0.8560460|-0.2782271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384785|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003mjv.3||-0.8560460|-0.2782271	chr5	178537853	178540735	-	NA	NA	NA	NA	ADAMTS2	NA	chr5:178537852-178550736	inner
CUST_28831_PI429285431	5.693094	P	5.769517	P	0.948406200480178	0	lncRNA	30539-1_{1..332}	n326244|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000089301|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000089301|-1.4020600|-0.1719035	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326244|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000089301|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000089301|-1.4020600|-0.1719035	chr1	210785658	210785989	+	NA	NA	NA	NA	HHAT	NA	chr1:210775658-210806030	inner
CUST_4313_PI429285431	2.1585412	A	3.0368981	A	0.543986630475296	0	lncRNA	4267-1_{1..904}	"transcript_id ""ENST00000541707.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000541707.1"" | genecode_v17"	chr12	 68726668	 68727571	-	ENSG00000251301.2	ENST00000541707.1	RP11-81H14.2	RP11-81H14.2-008	MDM1	NA	chr12:68716668-68726161	inter
CUST_23938_PI429285431	5.488657	P	5.371625	P	1.0845014635885	0	lncRNA	25495-1_{1..513}	lnc-TP53I13-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TP53I13-3:1	chr17	 27887981	 27888493	+	lnc-TP53I13-3	lnc-TP53I13-3:1	ENSG00000263356.1	RP11-68I3.9	TAOK1	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-24.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80chr17:27877981-27878921"	NA	inner
CUST_22896_PI429285431	0.91020274	A	0.9148306	A	0.99679735134436	0	lncRNA	24473-1_{1..656}	lnc-NSUN6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NSUN6-1:2	chr10	 18833253	 18833908	-	lnc-NSUN6-1	lnc-NSUN6-1:2	ENSG00000240291.1	RP11-499P20.2	NSUN6	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00chr10:18834264-18843316"	NA	inter
CUST_11811_PI429285431	3.5213313	P	3.5267696	P	0.996237553493802	0	lncRNA	13393-1_{1..452}	lnc-SSTR4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SSTR4-4:1	chr20	 22709020	 22709471	+	lnc-SSTR4-4	lnc-SSTR4-4:1	XLOC_013486	linc-SSTR4-3	NA	NA	NA	inter
CUST_50292_PI429285431	0.9249003	A	0.91990674	A	1.00346726915423	0	lncRNA	54011-1_{1..2267}	hg19_lincRNAsTranscripts_TCONS_l2_00028872 range=chr9:88358355-88401763 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028872 range=chr9:88358355-88401763 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 88358355	 88360621	+	NA	NA	NA	NA	AGTPBP1	NA	chr9:88348355-88356944	inter
CUST_50474_PI429285431	3.786485	P	1.2922149	A	5.63443168187464	0	lncRNA	54173-1_{1..1151}	hg19_lincRNAsTranscripts_TCONS_l2_00030550 range=chrX:89294189-89295476 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030550 range=chrX:89294189-89295476 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 89294189	 89295339	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16915_PI429285431	0.92386276	A	0.9181925	A	1.00393805858716	0	lncRNA	18625-1_{1..424}	lnc-BAMBI-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BAMBI-1:4	chr10	 29046289	 29046712	+	lnc-BAMBI-1	lnc-BAMBI-1:4	XLOC_008424	linc-LYZL1-6	NA	NA	NA	inter
CUST_2949_PI429285431	0.8957878	A	1.111104	A	0.861357352627713	0	lncRNA	2930-1_{1..1007}	"transcript_id ""ENST00000454441.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454441.2"" | genecode_v17"	chr7	153097005	153098011	-	ENSG00000234722.3	ENST00000454441.2	AC073236.3	AC073236.3-003	NA	NA	NA	inter
CUST_6122_PI429285431	9.023316	P	9.165737	P	0.905997516056391	0	lncRNA	6048-1_{1..592}	"transcript_id ""ENST00000582650.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582650.1"" | genecode_v17"	chr18	 22305817	 22306408	+	ENSG00000266573.1	ENST00000582650.1	RP11-449D8.5	RP11-449D8.5-002	NA	NA	NA	inter
CUST_27813_PI429285431	0.9253039	A	0.9283021	A	0.997923964073002	0	lncRNA	29399-1_{1..569}	n325041|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078283|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078283|-0.8931500|-0.2188139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325041|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078283|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078283|-0.8931500|-0.2188139	chr20	 21876284	 21876852	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5048_PI429285431	2.8017948	A	5.0273004	P	0.213823807619956	0	lncRNA	4988-1_{1..712}	"transcript_id ""ENST00000557532.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557532.1"" | genecode_v17"	chr14	102023645	102024356	-	ENSG00000258498.1	ENST00000557532.1	DIO3OS	DIO3OS-002	DIO3	NA	chr14:102027688-102029789	inter
CUST_5988_PI429285431	1.0341465	A	1.1326351	A	0.934010970217587	0	lncRNA	5915-1_{1..177}	"transcript_id ""ENST00000592651.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592651.1"" | genecode_v17"	chr17	 75543022	 75543198	+	ENSG00000267506.1	ENST00000592651.1	RP11-13K12.1	RP11-13K12.1-003	LOC100652922	NA	chr17:75548387-75550976	inter
CUST_14069_PI429285431	0.92044353	A	1.2509291	A	0.795268773920274	0	lncRNA	15715-1_{1..443}	lnc-VSX1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VSX1-1:3	chr20	 25129299	 25129741	-	lnc-VSX1-1	lnc-VSX1-1:3	XLOC_013704	linc-VSX1-2	NA	NA	NA	inter
CUST_2573_PI429285431	0.965603	A	1.0084332	A	0.970748716666962	0	lncRNA	2561-1_{1..340}	"transcript_id ""ENST00000444796.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444796.1"" | genecode_v17"	chr6	 84732774	 84733113	+	ENSG00000230852.1	ENST00000444796.1	RP11-51G5.1	RP11-51G5.1-001	MRAP2	NA	chr6:84743420-84744272	inter
CUST_49065_PI429285431	1.3363228	A	1.3775371	A	0.971836619247609	0	lncRNA	52890-1_{1..1008}	hg19_lincRNAsTranscripts_TCONS_l2_00020352 range=chr4:2452501-2461938 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020352 range=chr4:2452501-2461938 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	  2452501	  2453508	+	NA	NA	NA	NA	RNF4	NA	chr4:2470795-2471938	inner
CUST_1370_PI429285431	1.1733168	A	1.0187414	A	1.11309397500289	0	lncRNA	1358-1_{1..455}	"transcript_id ""ENST00000465347.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000465347.1"" | genecode_v17"	chr3	 69613257	 69613711	-	ENSG00000240842.1	ENST00000465347.1	RP11-62G11.2	RP11-62G11.2-001	NA	NA	NA	inter
CUST_23847_PI429285431	1.5823162	A	1.2624488	A	1.24821581847048	0	lncRNA	25410-1_{1..522}	lnc-NID1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-NID1-3:1	chr1	236003041	236003562	-	lnc-NID1-3	lnc-NID1-3:1	ENSG00000229463.1	LYST-IT2	LYST	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70chr1:235993041-236013482"	NA	inner
CUST_39426_PI429285431	2.6557496	A	2.970694	A	0.803881970939979	0	lncRNA	40381-6_{15001..18000}	n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	chr13	 19423542	 19426541	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_41035_PI429285431	8.324111	P	8.416128	P	0.938210141034396	0	lncRNA	41695-1_{1..826}	n411701|NR_044991|lncRNA|Homosapiens||RefGeneNoncode|NR_044991||4.0140600|-0.1586670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n411701|NR_044991|lncRNA|Homosapiens||RefGeneNoncode|NR_044991||4.0140600|-0.1586670	chr22	 45002207	 45003032	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1281_PI429285431	3.7860737	P	3.637701	P	1.10831862943561	0	lncRNA	1272-1_{1..399}	"transcript_id ""ENST00000426697.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426697.1"" | genecode_v17"	chr3	    95031	    95429	-	ENSG00000224918.1	ENST00000426697.1	AY269186.2	AY269186.2-001	NA	NA	NA	inter
CUST_26477_PI429285431	0.96398157	A	0.9569623	A	1.00487724242538	0	lncRNA	27985-1_{1..540}	lnc-RDX-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RDX-2:1	chr11	109454471	109455010	-	lnc-RDX-2	lnc-RDX-2:1	ENSG00000255028.1	RP11-708B6.2	NA	NA	NA	inter
CUST_3122_PI429285431	4.8991237	P	5.079138	P	0.882694246977784	0	lncRNA	3101-1_{1..570}	"transcript_id ""ENST00000520426.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520426.1"" | genecode_v17"	chr8	 58506725	 58507294	-	ENSG00000253322.1	ENST00000520426.1	RP11-388G22.1	RP11-388G22.1-001	NA	NA	NA	inter
CUST_17371_PI429285431	5.706378	P	5.3271556	P	1.30064063256518	0	lncRNA	19092-1_{1..1050}	lnc-ASB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASB2-1:1	chr14	 94453024	 94454073	-	lnc-ASB2-1	lnc-ASB2-1:1	XLOC_011106	linc-ASB2	ASB2	NA	chr14:94443024-94443076	inter
CUST_2604_PI429285431	1.3266929	A	1.1703798	A	1.11443548424902	0	lncRNA	2591-1_{1..762}	"transcript_id ""ENST00000449069.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449069.1"" | genecode_v17"	chr6	112221692	112222453	+	ENSG00000227012.1	ENST00000449069.1	RP1-97J1.2	RP1-97J1.2-001	NA	NA	NA	inter
CUST_26127_PI429285431	0.96115553	A	0.96947914	A	0.994247124723392	0	lncRNA	27638-1_{1..422}	lnc-DCLRE1B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DCLRE1B-2:2	chr1	114358000	114358421	+	lnc-DCLRE1B-2	lnc-DCLRE1B-2:2	ENSG00000231128.1	RP5-1073O3.2	RSBN1	NA	chr1:114348000-114355070	inner
CUST_46541_PI429285431	1.1191254	A	1.1083534	A	1.00749452585459	0	lncRNA	50727-1_{1..905}	"gi|372620360|ref|NR_046012.1| Homo sapiens uncharacterized LOC727915 (LOC727915), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|372620360|ref|NR_046012.1| Homo sapiens uncharacterized LOC727915 (LOC727915), non-coding RNA"	Chr15	 86840064	 86840968	-	727915	NR_046012.1	NA	NA	NA	NA	NA	inter
CUST_29609_PI429285431	3.9927633	P	4.095698	P	0.931136964473431	0	lncRNA	31370-1_{1..374}	n333146|AF369212|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078518|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078518|2.3795500|-0.0792178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333146|AF369212|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078518|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078518|2.3795500|-0.0792178	chr4	  1803189	  1803562	+	NA	NA	NA	NA	LETM1	NA	chr4:1813206-1815466	inner
CUST_15059_PI429285431	1.0045707	A	1.5291194	A	0.695176539175287	0	lncRNA	16722-1_{1..575}	lnc-RASA1-3:24	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASA1-3:24	chr5	 87713004	 87713578	+	lnc-RASA1-3	lnc-RASA1-3:24	XLOC_004459	linc-POLR3G-8	NA	NA	NA	inter
CUST_7072_PI429285431	1.2211133	A	0.9707656	A	1.18949375710857	0	lncRNA	7017-1_{1..3000}	"transcript_id ""ENST00000604411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000604411.1"" | genecode_v17"	chrX	 73012040	 73015039	+	ENSG00000270641.1	ENST00000604411.1	TSIX	TSIX-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
LNCA_19_P00322992	3.517281	P	3.6382935	P	0.91954207889215	0	lncRNA	ENST00000371162	XR_109904	XR_109904	NA	Hs.652426	NA	0	ENST00000371162	THC2481542	NA	"PREDICTED: Homo sapiens hypothetical LOC100128130 (LOC100128130), miscRNA [XR_109904]"	chr2:111995469-111995410	hs|2q13	Agilent_HUMAN_G3V2	ENST00000371162	ENST00000371162	chr2	111995410	111995469	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18419_PI429285431	3.445184	P	2.3654943	A	2.1135814355902	0	lncRNA	20143-2_{3001..3270}	lnc-RNF39-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-RNF39-4:5	chr6	 30031739	 30032008	-	lnc-RNF39-4	lnc-RNF39-4:5	ENSG00000204623	ZNRD1-AS1	ZNRD1	"hg19_refFlat_HLA-A:range=chr6_mann_hap4:1202716-12056335'pad=0,hg19_refFlat_HLA-A:range=chr6_mann_hap4:1202716-12056335'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_HLA-C:range=chr6_mann_hap4:2583839-25867335'pad=0,hg19_refFlat_HLA-C:range=chr6_mann_hap4:2583839-25867335'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_HLA-B:range=chr6:31322260-313249355'pad=0,hg19_refFlat_HLA-B:range=chr6:31322260-313249355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-C:range=chr6_cox_hap2:2750201-27531035'pad=0,hg19_refFlat_HLA-C:range=chr6_cox_hap2:2750201-27531035'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9946895'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9946895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-G:range=chr6_ssto_hap7:1133174-11357115'pad=0,hg19_refFlat_HLA-G:range=chr6_ssto_hap7:1133174-11357115'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12103735'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12103735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-C:range=chr6_ssto_hap7:2570423-25733175'pad=0,hg19_refFlat_HLA-C:range=chr6_ssto_hap7:2570423-25733175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-E:range=chr6_dbb_hap3:1750949-17539985'pad=0,hg19_refFlat_HLA-E:range=chr6_dbb_hap3:1750949-17539985'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9950435'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9950435'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-G:range=chr6_qbl_hap6:1096207-10987445'pad=0,hg19_refFlat_HLA-G:range=chr6_qbl_hap6:1096207-10987445'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10319385'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10319385'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-E:range=chr6_qbl_hap6:1750224-17532735'pad=0,hg19_refFlat_HLA-E:range=chr6_qbl_hap6:1750224-17532735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_HLA-B:range=chr6_cox_hap2:2834949-28376235'pad=0,hg19_refFlat_HLA-B:range=chr6_cox_hap2:2834949-28376235'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-G:range=chr6:29795622-297981595'pad=0,hg19_refFlat_HLA-G:range=chr6:29795622-297981595'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_HLA-E:range=chr6_cox_hap2:1969373-19724225'pad=0,hg19_refFlat_HLA-E:range=chr6_cox_hap2:1969373-19724225'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_HLA-G:range=chr6_dbb_hap3:1096243-10987805'pad=0,hg19_refFlat_HLA-G:range=chr6_dbb_hap3:1096243-10987805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_HLA-E:range=chr6:30457309-304603585'pad=0,hg19_refFlat_HLA-E:range=chr6:30457309-304603585'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_HLA-A:range=chr6_apd_hap1:1150217-11531195'pad=0,hg19_refFlat_HLA-A:range=chr6_apd_hap1:1150217-11531195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_HLA-B:range=chr6_qbl_hap6:2615766-26184515'pad=0,hg19_refFlat_HLA-B:range=chr6_qbl_hap6:2615766-26184515'pad=0 3'pad=0 strand=- repeatMasking=none,-92.90;hg19_refFlat_HLA-A:range=chr6_ssto_hap7:1239666-12425835'pad=0,hg19_refFlat_HLA-A:range=chr6_ssto_hap7:1239666-12425835'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_HLA-F:range=chr6_mcf_hap5:991775-9938785'pad=0,hg19_refFlat_HLA-F:range=chr6_mcf_hap5:991775-9938785'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-E:range=chr6_mcf_hap5:1839173-18422225'pad=0,hg19_refFlat_HLA-E:range=chr6_mcf_hap5:1839173-18422225'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_HLA-E:range=chr6_mann_hap4:1805387-18084365'pad=0,hg19_refFlat_HLA-E:range=chr6_mann_hap4:1805387-18084365'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_HLA-A:range=chr6:29910331-299132325'pad=0,hg19_refFlat_HLA-A:range=chr6:29910331-299132325'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_HLA-A:range=chr6_dbb_hap3:1203692-12066085'pad=0,hg19_refFlat_HLA-A:range=chr6_dbb_hap3:1203692-12066085'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_HLA-C:range=chr6_qbl_hap6:2530195-25330895'pad=0,hg19_refFlat_HLA-C:range=chr6_qbl_hap6:2530195-25330895'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_HLA-A:range=chr6_mcf_hap5:1150182-12951355'pad=0,hg19_refFlat_HLA-A:range=chr6_mcf_hap5:1150182-12951355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_HLA-B:range=chr6_mann_hap4:2668715-26713905'pad=0,hg19_refFlat_HLA-B:range=chr6_mann_hap4:2668715-26713905'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_HLA-G:range=chr6_mcf_hap5:1095901-10984385'pad=0,hg19_refFlat_HLA-G:range=chr6_mcf_hap5:1095901-10984385'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_HLA-A:range=chr6_cox_hap2:1422082-14249845'pad=0,hg19_refFlat_HLA-A:range=chr6_cox_hap2:1422082-14249845'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9950665'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9950665'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-G:range=chr6_cox_hap2:1311513-13140505'pad=0,hg19_refFlat_HLA-G:range=chr6_cox_hap2:1311513-13140505'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_HLA-F:range=chr6_mcf_hap5:991775-13591805'pad=0,hg19_refFlat_HLA-F:range=chr6_mcf_hap5:991775-13591805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-B:range=chr6_ssto_hap7:2656019-26586945'pad=0,hg19_refFlat_HLA-B:range=chr6_ssto_hap7:2656019-26586945'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_HLA-A:range=chr6_qbl_hap6:1203109-12060255'pad=0,hg19_refFlat_HLA-A:range=chr6_qbl_hap6:1203109-12060255'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_HLA-E:range=chr6_ssto_hap7:1789599-17926485'pad=0,hg19_refFlat_HLA-E:range=chr6_ssto_hap7:1789599-17926485'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_HLA-B:range=chr6_mcf_hap5:2702040-27047285'pad=0,hg19_refFlat_HLA-B:range=chr6_mcf_hap5:2702040-27047285'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_HLA-C:range=chr6_dbb_hap3:2532552-25354465'pad=0,hg19_refFlat_HLA-C:range=chr6_dbb_hap3:2532552-25354465'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_HLA-C:range=chr6:31236946-312398485'pad=0,hg19_refFlat_HLA-C:range=chr6:31236946-312398485'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_HLA-G:range=chr6_mann_hap4:1095951-10984885'pad=0,hg19_refFlat_HLA-G:range=chr6_mann_hap4:1095951-10984885'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_HLA-F:range=chr6:29691241-296941845'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296941845'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-C:range=chr6_mcf_hap5:2617482-26203755'pad=0,hg19_refFlat_HLA-C:range=chr6_mcf_hap5:2617482-26203755'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr6:30029036-30032686"	NA	inter
CUST_5297_PI429285431	3.5035257	P	3.686285	P	0.88101635109753	0	lncRNA	5237-1_{1..779}	"transcript_id ""ENST00000561037.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561037.1"" | genecode_v17"	chr15	 89925731	 89926509	+	ENSG00000255571.2	ENST00000561037.1	CTD-2335A18.1	CTD-2335A18.1-009	NA	NA	NA	inter
CUST_27105_PI429285431	1.2759638	A	1.0686612	A	1.15452755004715	0	lncRNA	28637-1_{1..2781}	n324216|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328277|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328277|-0.4516560|-0.2896464	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324216|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328277|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328277|-0.4516560|-0.2896464	chr7	 26557965	 26560745	+	NA	NA	NA	NA	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.92;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50"	NA	inter
CUST_15925_PI429285431	0.9896864	A	0.9912525	A	0.998915051183542	0	lncRNA	17621-1_{1..906}	lnc-COL1A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL1A1-1:1	chr17	 48293880	 48294785	-	lnc-COL1A1-1	lnc-COL1A1-1:1	XLOC_012513	linc-COL1A1-1	NA	NA	NA	inter
CUST_19601_PI429285431	1.9091543	A	1.4241643	A	1.39957616443885	0	lncRNA	21257-1_{1..326}	lnc-SASH3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SASH3-1:1	chrX	128930891	128931216	+	lnc-SASH3-1	lnc-SASH3-1:1	ENSG00000240143.1	RP4-753P9.3	ZDHHC9	NA	chrX:128937264-128940939	inter
LNCA_21_P0013484	3.6322598	P	3.4750566	P	1.11512326999997	0	lncRNA	TCONS_l2_00027777	NA	NA	NA	NA	XLOC_l2_014217	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014217), lincRNA [TCONS_l2_00027777]"	chr8:58125772-58125831	hs|8q12.1	Agilent_HUMAN_G3V2	TCONS_l2_00027777	TCONS_l2_00027777	chr8	 58125772	 58125831	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1813_PI429285431	1.2548792	A	1.0314143	A	1.16753427226494	0	lncRNA	1800-1_{1..373}	"transcript_id ""ENST00000514836.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514836.1"" | genecode_v17"	chr4	 80748689	 80749061	+	ENSG00000251321.1	ENST00000514836.1	GDEP	GDEP-002	NA	NA	NA	inter
CUST_41220_PI429285431	0.89560413	A	0.9172511	A	0.985107470925597	0	lncRNA	42112-1_{1..77}	ENST00000401186 ncrna:miRNA chromosome:GRCh37:X:145076302:145076378:-1 gene:ENSG00000216005 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401186 ncrna:miRNA chromosome:GRCh37:X:145076302:145076378:-1 gene:ENSG00000216005 gene_biotype:miRNA transcript_biotype:miRNA	chrX	145076302	145076378	-	ENSG00000216005	ENST00000401186	NA	NA	NA	NA	NA	inter
CUST_6024_PI429285431	1.2517318	A	1.3973379	A	0.90399951265611	0	lncRNA	5950-1_{1..976}	"transcript_id ""ENST00000573737.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000573737.1"" | genecode_v17"	chr17	 81168296	 81169271	-	ENSG00000262094.1	ENST00000573737.1	AC139099.5	AC139099.5-001	NA	NA	NA	inter
CUST_27526_PI429285431	3.0475402	P	2.2542772	A	1.73298960403982	0	lncRNA	29102-1_{1..327}	n324711|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320114|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320114|-0.2489110|-0.1540737	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324711|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320114|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320114|-0.2489110|-0.1540737	chr22	 20006429	 20006755	-	NA	NA	NA	NA	C22orf25	NA	chr22:20008631-20017224	inter
CUST_14397_PI429285431	3.8904967	P	4.088117	P	0.871987706026148	0	lncRNA	16059-1_{1..432}	lnc-ZNF705D-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF705D-3:7	chr8	 12299097	 12299528	+	lnc-ZNF705D-3	lnc-ZNF705D-3:7	XLOC_006721	linc-C8orf79-2	LOC100127885	NA	chr8:12295164-12309198	inter
CUST_20043_PI429285431	0.95415497	A	0.9597138	A	0.996154326274493	0	lncRNA	21694-1_{1..372}	lnc-SERAC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SERAC1-1:1	chr6	158313725	158314096	-	lnc-SERAC1-1	lnc-SERAC1-1:1	ENSG00000236324.1	RP3-403L10.3	SNX9	NA	chr6:158303725-158323818	inner
CUST_659_PI429285431	0.9478009	A	0.92122376	A	1.0185925990728	0	lncRNA	652-1_{1..435}	"transcript_id ""ENST00000454530.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454530.1"" | genecode_v17"	chr2	  3160527	  3160961	+	ENSG00000226649.1	ENST00000454530.1	AC019118.4	AC019118.4-001	NA	NA	NA	inter
CUST_30_PI429285431	0.93943155	A	0.9166687	A	1.0159031352588	0	lncRNA	29-1_{1..489}	"transcript_id ""ENST00000517318.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000517318.1"" | genecode_v17"	chr8	107277663	107278151	-	ENSG00000254021.1	ENST00000517318.1	RP11-778D12.2	RP11-778D12.2-001	OXR1	NA	chr8:107267663-107290969	inter
CUST_39338_PI429285431	0.9632448	A	1.394669	A	0.741529400723309	0	lncRNA	40305-1_{1..1226}	n386406|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010jpp.1||1.6473800|-0.2583964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386406|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010jpp.1||1.6473800|-0.2583964	chr6	 21665002	 21666227	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60"	NA	inter
CUST_18734_PI429285431	0.907055	A	1.0054052	A	0.934100575654087	0	lncRNA	20431-2_{3001..5178}	lnc-CASP9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CASP9-1:1	chr1	 15738783	 15740960	-	lnc-CASP9-1	lnc-CASP9-1:1	ENSG00000228140	RP3-467K16.4	EFHD2	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50chr1:15736391-15745929"	NA	inter
CUST_14042_PI429285431	0.9271131	A	1.2870791	A	0.779182942451751	0	lncRNA	15689-1_{1..1070}	lnc-C14orf126-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf126-5:1	chr14	 32671112	 32672181	-	lnc-C14orf126-5	lnc-C14orf126-5:1	XLOC_010989	linc-GPR33	NA	NA	NA	inter
LNCA_21_P0013315	0.9974482	A	0.9290154	A	1.04857699524924	0	lncRNA	TCONS_l2_00026611	NA	NA	NA	NA	XLOC_l2_013861	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013861), lincRNA [TCONS_l2_00026611]"	chr7:63226084-63226025	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00026611	TCONS_l2_00026611	chr7	 63226025	 63226084	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5857_PI429285431	1.6981508	A	1.3102916	A	1.30845036684892	0	lncRNA	5786-1_{1..579}	"transcript_id ""ENST00000436546.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436546.1"" | genecode_v17"	chr17	 41031607	 41032185	-	ENSG00000213373.3	ENST00000436546.1	LINC00671	LINC00671-002	G6PC	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70chr17:41052815-41060721"	NA	inter
CUST_11017_PI429285431	4.005434	P	4.039173	P	0.976885242667672	0	lncRNA	12562-1_{1..389}	lnc-ZNF23-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF23-2:1	chr16	 71466917	 71467305	-	lnc-ZNF23-2	lnc-ZNF23-2:1	XLOC_011999	linc-FTSJD1	NA	NA	NA	inter
CUST_31937_PI429285431	5.7713003	P	5.9786196	P	0.866145138302024	0	lncRNA	33665-1_{1..410}	n338493|BC040412|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|890|NULL|-1.1707700|-0.2081943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338493|BC040412|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|890|NULL|-1.1707700|-0.2081943	chr19	 31398105	 31398514	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50586_PI429285431	0.9122088	A	0.92044353	A	0.994308379114693	0	lncRNA	54277-3_{6001..6483}	hg19_lincRNAsTranscripts_TCONS_l2_00002976 range=chr10:37592575-37636288 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002976 range=chr10:37592575-37636288 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 37598575	 37599057	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41211_PI429285431	2.075213	A	1.9080914	A	1.12281605654226	0	lncRNA	42096-1_{1..94}	ENST00000362160 ncrna:miRNA chromosome:GRCh37:21:17912143:17912236:1 gene:ENSG00000199030 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362160 ncrna:miRNA chromosome:GRCh37:21:17912143:17912236:1 gene:ENSG00000199030 gene_biotype:miRNA transcript_biotype:miRNA	chr21	 17912143	 17912236	+	ENSG00000199030	ENST00000362160	NA	NA	NA	NA	NA	inter
CUST_24962_PI429285431	1.1702145	A	1.1311011	A	1.02748219927551	0	lncRNA	26500-1_{1..1315}	lnc-NUPL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUPL1-1:1	chr13	 25874262	 25875576	+	lnc-NUPL1-1	lnc-NUPL1-1:1	ENSG00000260509.1	RP11-271M24.2	NUPL1	NA	chr13:25875666-25885576	inter
CUST_4702_PI429285431	2.0081656	A	1.6495732	A	1.2821743029939	0	lncRNA	4649-1_{1..563}	"transcript_id ""ENST00000430978.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430978.1"" | genecode_v17"	chr13	114582226	114582788	-	ENSG00000226921.1	ENST00000430978.1	LINC00454	LINC00454-001	NA	NA	NA	inter
CUST_51194_PI429285431	13.810346	P	13.667464	P	1.10410853692295	0	lncRNA	54814-2_{3001..3891}	hg19_lincRNAsTranscripts_TCONS_l2_00008932 range=chr15:23186533-23208293 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008932 range=chr15:23186533-23208293 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 23189533	 23190423	-	NA	NA	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
CUST_47425_PI429285431	0.9147841	A	1.7963392	A	0.542782043902078	0	lncRNA	51462-1_{1..338}	"gi|397139751|ref|XR_109685.2| PREDICTED: Homo sapiens uncharacterized LOC100505827 (LOC100505827), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139751|ref|XR_109685.2| PREDICTED: Homo sapiens uncharacterized LOC100505827 (LOC100505827), misc_RNA"	NA	NA	NA	NA	NA	XR_109685.2	NA	NA	NA	NA	NA	Unknown
CUST_13629_PI429285431	1.7295759	A	1.6227578	A	1.07685059457138	0	lncRNA	15268-2_{3001..3969}	lnc-WDR26-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR26-1:2	chr1	224806314	224807282	-	lnc-WDR26-1	lnc-WDR26-1:2	XLOC_001228	linc-WDR26-2	CNIH3	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20chr1:224804179-224813762"	NA	inter
CUST_40989_PI429285431	3.9858224	P	4.2720346	P	0.820052284253408	0	lncRNA	41657-1_{1..1313}	n411133|NR_038957|lncRNA|Homosapiens||RefGeneNoncode|NR_038957||-1.0819000|-0.2494036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411133|NR_038957|lncRNA|Homosapiens||RefGeneNoncode|NR_038957||-1.0819000|-0.2494036	chr22	 45529638	 45530950	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3471_PI429285431	1.4100351	A	1.8618627	A	0.731116086309779	0	lncRNA	3442-1_{1..1013}	"transcript_id ""ENST00000425666.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425666.1"" | genecode_v17"	chr9	 93063184	 93064196	-	ENSG00000231107.1	ENST00000425666.1	RP11-389K14.3	RP11-389K14.3-001	NA	NA	NA	inter
CUST_22716_PI429285431	0.8982985	A	0.91401786	A	0.989163314487623	0	lncRNA	24300-1_{1..2275}	lnc-SIX2-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SIX2-3:10	chr2	 45147332	 45149606	-	lnc-SIX2-3	lnc-SIX2-3:10	ENSG00000259439.1	RP11-89K21.1	NA	"hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0,hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40"	NA	inter
CUST_27140_PI429285431	0.907517	A	2.1354105	A	0.426940372845285	0	lncRNA	28676-1_{1..2067}	n324256|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325029|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325029|1.4485800|-0.2901057	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324256|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325029|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325029|1.4485800|-0.2901057	chr7	  2443923	  2445989	+	NA	NA	NA	NA	CHST12	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70chr7:2433923-2464011"	NA	inner
CUST_32214_PI429285431	3.1747882	P	1.6976178	A	2.78402159138023	0	lncRNA	33907-1_{1..2131}	n338788|BC043240|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1210|NULL|-1.0316700|-0.4272625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338788|BC043240|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1210|NULL|-1.0316700|-0.4272625	chr13	 79886131	 79888261	-	NA	NA	NA	NA	RBM26	NA	chr13:79894089-79898263	inter
CUST_11973_PI429285431	0.9214217	A	0.90766764	A	1.00957917732119	0	lncRNA	13553-1_{1..1856}	lnc-SAFB2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SAFB2-1:3	chr19	  5562093	  5563948	-	lnc-SAFB2-1	lnc-SAFB2-1:3	XLOC_013207	linc-PTPRS-2	NA	NA	NA	inter
CUST_31576_PI429285431	6.4177666	P	6.812816	P	0.760463336791606	0	lncRNA	33333-1_{1..991}	n338077|BC008350|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|464|NULL|5.2019200|-0.1678038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338077|BC008350|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|464|NULL|5.2019200|-0.1678038	chr15	 83328032	 83329022	-	NA	NA	NA	NA	AP3B2	NA	chr15:83328033-83378635	inner
CUST_17742_PI429285431	0.9059159	A	0.8969223	A	1.00625335960513	0	lncRNA	19472-1_{1..1181}	lnc-NKD2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NKD2-3:1	chr5	  1045306	  1046486	+	lnc-NKD2-3	lnc-NKD2-3:1	XLOC_004244	linc-SLC6A19-1	SLC12A7	NA	chr5:1050489-1055593	inter
CUST_13869_PI429285431	4.726205	P	5.1015534	P	0.770919219030374	0	lncRNA	15513-1_{1..373}	lnc-MOGAT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MOGAT1-1:1	chr2	223637125	223637497	+	lnc-MOGAT1-1	lnc-MOGAT1-1:1	XLOC_001880	linc-ACSL3	NA	NA	NA	inter
LNCA_21_P0012068	1.0042634	A	1.9790761	A	0.508805898235705	0	lncRNA	ENST00000453476	NA	NA	NA	NA	XLOC_l2_008027	NA	ENST00000453476	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008027), lincRNA [TCONS_l2_00015809]"	chr2:60586413-60586354	hs|2p16.1	Agilent_HUMAN_G3V2	ENST00000453476	ENST00000453476	chr2	 60586354	 60586413	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2223_PI429285431	2.1209874	A	2.21482	A	0.937030166834334	0	lncRNA	2215-1_{1..785}	"transcript_id ""ENST00000511602.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511602.1"" | genecode_v17"	chr5	 84742792	 84743576	+	ENSG00000249842.1	ENST00000511602.1	CTD-2331D11.4	CTD-2331D11.4-001	NA	NA	NA	inter
CUST_10631_PI429285431	6.0264363	P	5.63365	P	1.31292663303697	0	lncRNA	12162-1_{1..382}	lnc-BNIP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BNIP1-1:1	chr5	172707807	172708188	+	lnc-BNIP1-1	lnc-BNIP1-1:1	XLOC_004637	linc-CPEB4-8	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00"	NA	inter
CUST_3146_PI429285431	0.9180351	A	0.91486025	A	1.00220306150791	0	lncRNA	3125-1_{1..407}	"transcript_id ""ENST00000519215.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519215.1"" | genecode_v17"	chr8	 62802398	 62802804	+	ENSG00000254120.1	ENST00000519215.1	RP11-705O24.2	RP11-705O24.2-001	NA	NA	NA	inter
CUST_20539_PI429285431	5.2860675	P	5.278798	P	1.00505154969966	0	lncRNA	22180-1_{1..2095}	lnc-TNXB-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNXB-6:1	chr6	 32003534	 32005628	-	lnc-TNXB-6	lnc-TNXB-6:1	ENSG00000229776.1	C4B-AS1	TNXB	"hg19_refFlat_C4A:range=chr6_ssto_hap7:3315333-33357655'pad=0,hg19_refFlat_C4A:range=chr6_ssto_hap7:3315333-33357655'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_C4A:range=chr6:31982623-320030545'pad=0,hg19_refFlat_C4A:range=chr6:31982623-320030545'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_C4B:range=chr6_cox_hap2:3459641-34737055'pad=0,hg19_refFlat_C4B:range=chr6_cox_hap2:3459641-34737055'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_C4B:range=chr6_ssto_hap7:3282595-33030275'pad=0,hg19_refFlat_C4B:range=chr6_ssto_hap7:3282595-33030275'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_LOC100293534:range=chr6:31982623-320030545'pad=0,hg19_refFlat_LOC100293534:range=chr6:31982623-320030545'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_C4A:range=chr6_ssto_hap7:3282595-33030275'pad=0,hg19_refFlat_C4A:range=chr6_ssto_hap7:3282595-33030275'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_LOC100293534:range=chr6_mcf_hap5:3362467-33828995'pad=0,hg19_refFlat_LOC100293534:range=chr6_mcf_hap5:3362467-33828995'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_C4B:range=chr6_dbb_hap3:3235466-32558995'pad=0,hg19_refFlat_C4B:range=chr6_dbb_hap3:3235466-32558995'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_C4B:range=chr6_qbl_hap6:3243675-32641085'pad=0,hg19_refFlat_C4B:range=chr6_qbl_hap6:3243675-32641085'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_C4A:range=chr6_dbb_hap3:3235466-32558995'pad=0,hg19_refFlat_C4A:range=chr6_dbb_hap3:3235466-32558995'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_LOC100293534:range=chr6_cox_hap2:3459641-34737055'pad=0,hg19_refFlat_LOC100293534:range=chr6_cox_hap2:3459641-34737055'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_C4A:range=chr6:31949885-319703175'pad=0,hg19_refFlat_C4A:range=chr6:31949885-319703175'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_LOC100293534:range=chr6_dbb_hap3:3235466-32558995'pad=0,hg19_refFlat_LOC100293534:range=chr6_dbb_hap3:3235466-32558995'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_C4A:range=chr6_qbl_hap6:3243675-32641085'pad=0,hg19_refFlat_C4A:range=chr6_qbl_hap6:3243675-32641085'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_C4B:range=chr6_dbb_hap3:3268206-32822705'pad=0,hg19_refFlat_C4B:range=chr6_dbb_hap3:3268206-32822705'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_C4A:range=chr6_mcf_hap5:3362467-33828995'pad=0,hg19_refFlat_C4A:range=chr6_mcf_hap5:3362467-33828995'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_C4A:range=chr6_dbb_hap3:3268206-32822705'pad=0,hg19_refFlat_C4A:range=chr6_dbb_hap3:3268206-32822705'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_LOC100293534:range=chr6_ssto_hap7:3282595-33030275'pad=0,hg19_refFlat_LOC100293534:range=chr6_ssto_hap7:3282595-33030275'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_C4B:range=chr6_mcf_hap5:3362467-33828995'pad=0,hg19_refFlat_C4B:range=chr6_mcf_hap5:3362467-33828995'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_C4A:range=chr6_cox_hap2:3459641-34737055'pad=0,hg19_refFlat_C4A:range=chr6_cox_hap2:3459641-34737055'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_C4B:range=chr6:31949885-319703175'pad=0,hg19_refFlat_C4B:range=chr6:31949885-319703175'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_LOC100293534:range=chr6_dbb_hap3:3268206-32822705'pad=0,hg19_refFlat_LOC100293534:range=chr6_dbb_hap3:3268206-32822705'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_LOC100293534:range=chr6_ssto_hap7:3315333-33357655'pad=0,hg19_refFlat_LOC100293534:range=chr6_ssto_hap7:3315333-33357655'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_LOC100293534:range=chr6:31949885-319703175'pad=0,hg19_refFlat_LOC100293534:range=chr6:31949885-319703175'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_C4B:range=chr6_ssto_hap7:3315333-33357655'pad=0,hg19_refFlat_C4B:range=chr6_ssto_hap7:3315333-33357655'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_LOC100293534:range=chr6_qbl_hap6:3243675-32641085'pad=0,hg19_refFlat_LOC100293534:range=chr6_qbl_hap6:3243675-32641085'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_C4B:range=chr6:31982623-320030545'pad=0,hg19_refFlat_C4B:range=chr6:31982623-320030545'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60chr6:32008932-32014035"	NA	inter
CUST_18083_PI429285431	1.500795	A	1.5132215	A	0.991423595557596	0	lncRNA	19818-1_{1..434}	lnc-PRDM11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRDM11-2:1	chr11	 45063088	 45063521	+	lnc-PRDM11-2	lnc-PRDM11-2:1	XLOC_009118	linc-PRDM11-1	NA	NA	NA	inter
CUST_39845_PI429285431	5.923541	P	5.4432755	P	1.39500036545083	0	lncRNA	40747-1_{1..3000}	n406463|NR_023356|lncRNA|Homosapiens||RefGeneNoncode|NR_023356||6.3265200|-0.3198510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406463|NR_023356|lncRNA|Homosapiens||RefGeneNoncode|NR_023356||6.3265200|-0.3198510	chr11	 95566043	 95569042	-	NA	NA	NA	NA	CEP57	NA	chr11:95556043-95565854	inner
CUST_25445_PI429285431	0.9082879	A	0.8979264	A	1.00720789724783	0	lncRNA	26975-1_{1..362}	lnc-SRPR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRPR-1:1	chr11	126078823	126079184	-	lnc-SRPR-1	lnc-SRPR-1:1	ENSG00000254694.1	RP11-50B3.4	FAM118B	NA	chr11:126081619-126088922	inner
CUST_44879_PI429285431	1.6775501	A	3.0652692	P	0.382168533088423	0	lncRNA	49403-1_{1..437}	"gi|397139171|ref|XR_108740.2| PREDICTED: Homo sapiens uncharacterized LOC100505938 (LOC100505938), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139171|ref|XR_108740.2| PREDICTED: Homo sapiens uncharacterized LOC100505938 (LOC100505938), misc_RNA"	Chr7	  8276675	  8277111	+	100505938	XR_108740.3	NA	NA	NA	NA	NA	inter
CUST_30940_PI429285431	8.716945	P	8.94954	P	0.851102621423427	0	lncRNA	32728-1_{1..352}	n337013|DQ088988|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341106|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341106|1.1863900|-0.2129345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337013|DQ088988|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341106|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341106|1.1863900|-0.2129345	chr14	 24464306	 24464657	+	NA	NA	NA	NA	DHRS4L2	NA	chr14:24454306-24475617	inner
CUST_42750_PI429285431	4.8002	P	5.3153973	P	0.699697237102297	0	lncRNA	45706-1_{1..132}	ENST00000384122 ncrna:snoRNA chromosome:GRCh37:15:32220506:32220637:1 gene:ENSG00000206849 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384122 ncrna:snoRNA chromosome:GRCh37:15:32220506:32220637:1 gene:ENSG00000206849 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 32220506	 32220637	+	ENSG00000206849	ENST00000384122	NA	NA	NA	NA	NA	inter
CUST_660_PI429285431	2.3709638	A	2.0744395	A	1.22818194510063	0	lncRNA	653-1_{1..717}	"transcript_id ""ENST00000451101.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451101.1"" | genecode_v17"	chr2	  3891774	  3892490	+	ENSG00000227363.1	ENST00000451101.1	AC019172.2	AC019172.2-001	NA	NA	NA	inter
CUST_11595_PI429285431	1.408822	A	2.521578	A	0.462409838854339	0	lncRNA	13176-1_{1..3000}	lnc-B3GAT2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-B3GAT2-3:2	chr6	 72129769	 72132768	-	lnc-B3GAT2-3	lnc-B3GAT2-3:2	XLOC_005764	linc-B3GAT2-4	NA	NA	NA	inter
CUST_23897_PI429285431	4.4593897	P	4.6296444	P	0.88868577465352	0	lncRNA	25454-1_{1..353}	lnc-SCGB1D4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SCGB1D4-2:1	chr11	 62027970	 62028322	-	lnc-SCGB1D4-2	lnc-SCGB1D4-2:1	ENSG00000254404.1	RP11-703H8.9	SCGB2A2	NA	chr11:62037630-62038021	inter
CUST_19299_PI429285431	1.4612105	A	1.1503932	A	1.24041020471367	0	lncRNA	20966-1_{1..575}	lnc-DEXI-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DEXI-1:1	chr16	 10982172	 10982746	-	lnc-DEXI-1	lnc-DEXI-1:1	ENSG00000262151.1	RP11-876N24.2	CIITA	NA	chr16:10972172-10992609	inner
CUST_30398_PI429285431	0.9287328	A	0.9182082	A	1.00732177085909	0	lncRNA	32178-1_{1..453}	n335519|BC066279|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000262174|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000262174|0.6733370|-0.4008141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335519|BC066279|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000262174|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000262174|0.6733370|-0.4008141	chr5	131877474	131877926	-	NA	NA	NA	NA	IL5	NA	chr5:131877136-131879214	inner
CUST_27652_PI429285431	0.90944725	A	0.90232897	A	1.00494620801205	0	lncRNA	29230-1_{1..2909}	n324859|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171137|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171137|-1.2823900|-0.4330475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324859|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171137|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171137|-1.2823900|-0.4330475	chr21	 24722924	 24725832	+	NA	NA	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90"	NA	inter
CUST_8674_PI429285431	0.9152734	A	0.90002334	A	1.0106266015823	0	lncRNA	10223-1_{1..1468}	lnc-TM6SF1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TM6SF1-2:1	chr15	 83895940	 83897407	+	lnc-TM6SF1-2	lnc-TM6SF1-2:1	ENSG00000245208	XLOC_011336	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-62.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90"	NA	inter
CUST_45507_PI429285431	0.9114404	A	0.89991903	A	1.0080179783267	0	lncRNA	49917-1_{1..770}	"gi|310120436|ref|XR_109006.1| PREDICTED: Homo sapiens uncharacterized LOC100507163 (LOC100507163), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310120436|ref|XR_109006.1| PREDICTED: Homo sapiens uncharacterized LOC100507163 (LOC100507163), misc_RNA"	Chr10	  9317576	  9318345	+	100507163	XR_109006.2	NA	NA	NA	NA	NA	inter
CUST_2198_PI429285431	1.1085992	A	0.91346556	A	1.14483020381515	0	lncRNA	2190-1_{1..438}	"transcript_id ""ENST00000513280.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513280.1"" | genecode_v17"	chr5	 72587763	 72588200	+	ENSG00000249743.1	ENST00000513280.1	RP11-60A8.1	RP11-60A8.1-002	NA	NA	NA	inter
CUST_31283_PI429285431	0.91766703	A	0.90973467	A	1.00551343632345	0	lncRNA	33071-1_{1..226}	n337744|X65706|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|126|NULL|-1.4558800|-0.5145241	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337744|X65706|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|126|NULL|-1.4558800|-0.5145241	chr15	 45654023	 45654248	+	NA	NA	NA	NA	GATM	NA	chr15:45644023-45664249	inner
CUST_46578_PI429285431	4.2168846	P	5.531417	P	0.402055786816963	0	lncRNA	50762-1_{1..1044}	"gi|394581974|ref|NR_073012.1| Homo sapiens protease, serine, 21 (testisin) (PRSS21), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|394581974|ref|NR_073012.1| Homo sapiens protease, serine, 21 (testisin) (PRSS21), transcript variant 5, non-coding RNA"	Chr16	  2867164	  2868207	+	10942	NR_073012.1	NA	NA	NA	NA	NA	inter
CUST_43494_PI429285431	4.509511	P	5.005581	P	0.709035614382511	0	lncRNA	48286-1_{1..866}	"gi|225703082|ref|NR_027404.1| Homo sapiens HERV-H LTR-associating 3 (HHLA3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225703082|ref|NR_027404.1| Homo sapiens HERV-H LTR-associating 3 (HHLA3), transcript variant 4, non-coding RNA"	Chr1	 70820493	 70821358	+	11147	NR_027404.1	NA	NA	NA	NA	NA	inter
CUST_23488_PI429285431	3.7339125	P	3.9484258	P	0.861836855417532	0	lncRNA	25055-1_{1..248}	lnc-DDX54-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DDX54-1:1	chr12	113629898	113630145	-	lnc-DDX54-1	lnc-DDX54-1:1	ENSG00000257286.1	RP11-545P7.4	IQCD	NA	chr12:113633246-113639966	inner
CUST_40760_PI429285431	5.314911	P	5.6307564	P	0.803380082799275	0	lncRNA	41485-1_{1..3000}	n410479|NR_037625_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_4||-0.8197030|-0.2330137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410479|NR_037625_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_4||-0.8197030|-0.2330137	chr6	  4275529	  4278528	+	NA	NA	NA	NA	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50"	NA	inter
CUST_51276_PI429285431	1.4455693	A	1.1531582	A	1.22468532020224	0	lncRNA	54882-1_{1..869}	hg19_lincRNAsTranscripts_TCONS_l2_00008967 range=chr15:30699085-30702032 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008967 range=chr15:30699085-30702032 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 30699085	 30699953	-	NA	NA	NA	NA	LOC100652910	NA	chr15:30689085-30706365	inter
CUST_1909_PI429285431	2.3488498	A	2.0142643	A	1.26101505516693	0	lncRNA	1900-1_{1..260}	"transcript_id ""ENST00000505874.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505874.1"" | genecode_v17"	chr4	138953508	138953767	-	ENSG00000248307.1	ENST00000505874.1	LINC00616	LINC00616-002	NA	NA	NA	inter
CUST_47530_PI429285431	2.032633	A	2.0992992	A	0.954841912771824	0	lncRNA	51541-1_{1..1565}	"gi|310124151|ref|XR_109729.1| PREDICTED: Homo sapiens uncharacterized LOC100506695 (LOC100506695), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124151|ref|XR_109729.1| PREDICTED: Homo sapiens uncharacterized LOC100506695 (LOC100506695), misc_RNA"	NA	NA	NA	NA	NA	XR_109729.1	NA	NA	NA	NA	NA	Unknown
CUST_42232_PI429285431	5.33907	P	5.50135	P	0.893611712282744	0	lncRNA	44346-1_{1..73}	ENST00000408827 ncrna:miRNA chromosome:GRCh37:14:77732561:77732633:1 gene:ENSG00000221754 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408827 ncrna:miRNA chromosome:GRCh37:14:77732561:77732633:1 gene:ENSG00000221754 gene_biotype:miRNA transcript_biotype:miRNA	chr14	 77732561	 77732633	+	ENSG00000221754	ENST00000408827	NA	NA	TMEM63C	NA	chr14:77722561-77725838	inter
CUST_31945_PI429285431	4.5606575	P	4.5241055	P	1.02565959787024	0	lncRNA	33672-1_{1..504}	n338502|AF007835|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|899|NULL|-1.0582200|-0.3302329	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338502|AF007835|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|899|NULL|-1.0582200|-0.3302329	chr1	207191745	207192248	+	NA	NA	NA	NA	C1orf116	NA	chr1:207191866-207202245	inner
CUST_22835_PI429285431	0.91271573	A	1.6517545	A	0.599138409617443	0	lncRNA	24414-2_{3001..4755}	lnc-SEC16B.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC16B.1-5:1	chr1	178334256	178336010	-	lnc-SEC16B.1-5	lnc-SEC16B.1-5:1	ENSG00000226585.1	RP4-765C7.1	RASAL2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70chr1:178321256-178343230"	NA	inner
CUST_25798_PI429285431	0.91562235	A	0.9085487	A	1.0049151203225	0	lncRNA	27319-1_{1..565}	lnc-IFRD2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IFRD2-2:2	chr3	 50193167	 50193731	-	lnc-IFRD2-2	lnc-IFRD2-2:2	ENSG00000235016.1	RP11-493K19.3	SEMA3F	"hg19_refFlat_RBM5:range=chr3:50127868-501558895'pad=0,hg19_refFlat_RBM5:range=chr3:50127868-501558895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70chr3:50192848-50203453"	NA	inner
CUST_20988_PI429285431	1.1621381	A	1.9181762	A	0.592120168473528	0	lncRNA	22617-1_{1..548}	lnc-PGAM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PGAM1-1:1	chr10	 99178993	 99179540	+	lnc-PGAM1-1	lnc-PGAM1-1:1	ENSG00000231970.1	RP11-452K12.7	PGAM1	"hg19_refFlat_RRP12:range=chr10:99116851-991609885'pad=0,hg19_refFlat_RRP12:range=chr10:99116851-991609885'pad=0 3'pad=0 strand=- repeatMasking=none,-100.50chr10:99168993-99189281"	NA	inter
CUST_8221_PI429285431	14.288239	P	13.247372	P	2.05746373239433	0	lncRNA	9811-1_{1..483}	lnc-SERPINC1-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:14	chr1	173837098	173837580	-	lnc-SERPINC1-1	lnc-SERPINC1-1:14	ENSG00000234741	GAS5	DARS2	NA	chr1:173827098-173827682	inter
CUST_52068_PI429285431	1.3392591	A	1.7812978	A	0.73609368525639	0	lncRNA	55596-1_{1..880}	hg19_lincRNAsTranscripts_TCONS_l2_00017848 range=chr22:16151707-16192967 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017848 range=chr22:16151707-16192967 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 16151707	 16152586	-	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_18410_PI429285431	0.9003169	A	1.0002031	A	0.933106592221118	0	lncRNA	20135-1_{1..2225}	lnc-RNF144A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF144A-2:2	chr2	  7590015	  7592239	+	lnc-RNF144A-2	lnc-RNF144A-2:2	ENSG00000229727	AC013460.1	NA	NA	NA	inter
CUST_8037_PI429285431	1.5757482	A	3.5398693	A	0.256295295110461	0	lncRNA	9645-1_{1..403}	lnc-ZFC3H1-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZFC3H1-6:4	chr12	 72665603	 72666005	-	lnc-ZFC3H1-6	lnc-ZFC3H1-6:4	ENSG00000236333	AC087886.1	TRHDE	NA	chr12:72666529-72675771	inter
CUST_14108_PI429285431	4.635082	P	4.800772	P	0.891502037375774	0	lncRNA	15755-1_{1..1048}	lnc-EMP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EMP3-1:1	chr19	 48826047	 48827094	+	lnc-EMP3-1	lnc-EMP3-1:1	XLOC_013108	linc-EMP3-1	TMEM143	NA	chr19:48835616-48836461	inter
CUST_51491_PI429285431	0.91908705	A	1.0299686	A	0.926022048857115	0	lncRNA	55067-1_{1..2575}	hg19_lincRNAsTranscripts_TCONS_l2_00010196 range=chr16:56175875-56224775 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010196 range=chr16:56175875-56224775 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 56175875	 56178449	-	NA	NA	NA	NA	GNAO1	NA	chr16:56225251-56234775	inter
CUST_28035_PI429285431	8.049387	P	8.031408	P	1.01254006861805	0	lncRNA	29650-1_{1..470}	n325297|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327026|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327026|-1.1939900|-0.4461882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325297|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327026|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327026|-1.1939900|-0.4461882	chr2	 60440358	 60440827	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40135_PI429285431	0.9204464	A	0.91217685	A	1.00574847470006	0	lncRNA	40974-1_{1..2141}	n407725|NR_027243|lncRNA|Homosapiens||RefGeneNoncode|NR_027243||5.8608000|-0.1980312	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407725|NR_027243|lncRNA|Homosapiens||RefGeneNoncode|NR_027243||5.8608000|-0.1980312	chr21	 43522243	 43524383	-	NA	NA	NA	NA	UMODL1	"hg19_refFlat_UMODL1:range=chr21:43491426-435577305'pad=0,hg19_refFlat_UMODL1:range=chr21:43491426-435577305'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.60;hg19_refFlat_UMODL1:range=chr21:43496254-435577305'pad=0,hg19_refFlat_UMODL1:range=chr21:43496254-435577305'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.60chr21:43512243-43538644"	NA	inner
CUST_37417_PI429285431	7.876459	P	7.3373637	P	1.45306103114667	0	lncRNA	38523-1_{1..1204}	n345872|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1421|NULL|-1.1600300|-0.1339495	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345872|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1421|NULL|-1.1600300|-0.1339495	chr11	 67559299	 67560502	-	NA	NA	NA	NA	NA	"hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.60;hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0 3'pad=0 strand=- repeatMasking=none,-95.60"	NA	inter
CUST_34312_PI429285431	1.2125862	A	0.89876306	A	1.242997280514	0	lncRNA	35806-1_{1..201}	n341173|AF147376|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3639|NULL|-1.0604500|-0.3551736	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341173|AF147376|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3639|NULL|-1.0604500|-0.3551736	chr7	  3000864	  3001064	-	NA	NA	NA	NA	CARD11	NA	chr7:2990864-3011065	inner
CUST_18207_PI429285431	0.9218401	A	1.0569812	A	0.910580771644404	0	lncRNA	19942-1_{1..1925}	lnc-IDE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-IDE-1:1	chr10	 94180306	 94182230	-	lnc-IDE-1	lnc-IDE-1:1	ENSG00000256759	AL161652.2	NA	NA	NA	inter
CUST_45122_PI429285431	0.89721566	A	1.471182	A	0.671767385907128	0	lncRNA	49603-1_{1..558}	"gi|310120144|ref|XR_108717.1| PREDICTED: Homo sapiens uncharacterized LOC100506534 (LOC100506534), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310120144|ref|XR_108717.1| PREDICTED: Homo sapiens uncharacterized LOC100506534 (LOC100506534), misc_RNA"	NA	NA	NA	NA	NA	XR_108717.1	NA	NA	NA	NA	NA	Unknown
CUST_37511_PI429285431	0.91567713	A	0.9087617	A	1.00480491757866	0	lncRNA	38615-1_{1..575}	n345985|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1534|NULL|-1.3051600|-0.4765317	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345985|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1534|NULL|-1.3051600|-0.4765317	chr9	  3528233	  3528807	+	NA	NA	NA	NA	RFX3	NA	chr9:3518233-3525983	inter
CUST_26431_PI429285431	0.99440044	A	0.92411125	A	1.04992712171734	0	lncRNA	27938-1_{1..401}	lnc-RPL30-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPL30-2:1	chr8	 98711627	 98712027	-	lnc-RPL30-2	lnc-RPL30-2:1	ENSG00000254071.1	KB-1907C4.2	MTDH	NA	chr8:98701627-98721664	inner
CUST_48286_PI429285431	2.3021762	A	2.923855	A	0.649914211289875	0	lncRNA	52146-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00000110 range=chr1:16970894-16976875 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000110 range=chr1:16970894-16976875 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16970894	 16973893	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31029_PI429285431	6.2563934	P	6.3032155	P	0.968066392656127	0	lncRNA	32818-1_{1..374}	n337241|BC127201|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389210|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389210|1.7330700|-0.0003001	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337241|BC127201|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389210|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389210|1.7330700|-0.0003001	chr2	  5832799	  5833172	+	NA	NA	NA	NA	SOX11	NA	chr2:5832799-5841517	inner
CUST_10970_PI429285431	3.1181958	P	3.3269687	P	0.865272885693041	0	lncRNA	12512-1_{1..1205}	lnc-AP001496.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP001496.1-2:1	chr18	  5214234	  5215438	+	lnc-AP001496.1-2	lnc-AP001496.1-2:1	XLOC_012614	linc-ARHGAP28-6	NA	NA	NA	inter
CUST_17174_PI429285431	0.91638017	A	0.92391485	A	0.994790972086188	0	lncRNA	18885-1_{1..988}	lnc-NEUROD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NEUROD2-1:1	chr17	 37754115	 37755102	-	lnc-NEUROD2-1	lnc-NEUROD2-1:1	XLOC_012462	linc-MED1	NEUROD2	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40chr17:37760021-37764175"	NA	inter
CUST_28086_PI429285431	0.91583645	A	1.2977191	A	0.767435469293336	0	lncRNA	29707-1_{1..723}	n325357|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324852|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324852|-1.0043200|-0.1736410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325357|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324852|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324852|-1.0043200|-0.1736410	chr2	 28798809	 28799531	-	NA	NA	NA	NA	PLB1	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50chr2:28788809-28822479"	NA	inner
CUST_25787_PI429285431	1.1687769	A	0.9071182	A	1.19885626545624	0	lncRNA	27309-1_{1..458}	lnc-OSGIN1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OSGIN1-1:2	chr16	 83984733	 83985190	+	lnc-OSGIN1-1	lnc-OSGIN1-1:2	ENSG00000260300.1	RP11-505K9.4	OSGIN1	NA	chr16:83982672-83994757	inter
CUST_4967_PI429285431	0.920172	A	0.9225669	A	0.998341358885369	0	lncRNA	4911-1_{1..3000}	"transcript_id ""ENST00000553378.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553378.1"" | genecode_v17"	chr14	 97059070	 97062069	+	ENSG00000258702.1	ENST00000553378.1	RP11-433J8.1	RP11-433J8.1-002	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20"	NA	inter
CUST_10391_PI429285431	7.1444087	P	6.2789044	P	1.82197643526026	0	lncRNA	11919-1_{1..2112}	lnc-CA5A-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CA5A-4:1	chr16	 88219678	 88221789	-	lnc-CA5A-4	lnc-CA5A-4:1	XLOC_012057	linc-CA5A-2	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40"	NA	inter
CUST_40508_PI429285431	1.3149972	A	0.91764337	A	1.31708990700434	0	lncRNA	41273-1_{1..3000}	n409499|NR_033884|lncRNA|Homosapiens||RefGeneNoncode|NR_033884||0.7701140|-0.2728197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409499|NR_033884|lncRNA|Homosapiens||RefGeneNoncode|NR_033884||0.7701140|-0.2728197	chr6	  3020389	  3023388	-	NA	NA	NA	NA	NQO2	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70chr6:3010389-3019994"	NA	inter
CUST_32595_PI429285431	1.7085799	A	1.5843213	A	1.08994746545615	0	lncRNA	34256-1_{1..1018}	n339215|BC029912|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1647|NULL|-0.9507510|-0.1994160	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339215|BC029912|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1647|NULL|-0.9507510|-0.1994160	chr16	 52586004	 52587021	-	NA	NA	NA	NA	TOX3	NA	chr16:52576004-52581714	inter
CUST_40329_PI429285431	0.9098205	A	0.9138171	A	0.997233601530142	0	lncRNA	41133-1_{1..603}	n408371|NR_029462_3|lncRNA|Homosapiens||RefGeneNoncode|NR_029462_3||-1.1805900|-0.3209412	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408371|NR_029462_3|lncRNA|Homosapiens||RefGeneNoncode|NR_029462_3||-1.1805900|-0.3209412	chr6	  2868673	  2869275	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41600_PI429285431	6.856234	P	6.757044	P	1.07117188505916	0	lncRNA	42950-1_{1..191}	ENST00000583730 ncrna:miRNA chromosome:GRCh37:5:171197534:171197724:1 gene:ENSG00000264303 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583730 ncrna:miRNA chromosome:GRCh37:5:171197534:171197724:1 gene:ENSG00000264303 gene_biotype:miRNA transcript_biotype:miRNA	chr5	171197534	171197724	+	ENSG00000264303	ENST00000583730	NA	NA	C5orf50	NA	chr5:171187534-171207724	inter
CUST_13805_PI429285431	6.735973	P	6.5734205	P	1.11926565721833	0	lncRNA	15447-1_{1..767}	lnc-AC099552.4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC099552.4.1-1:1	chr7	155000580	155001346	-	lnc-AC099552.4.1-1	lnc-AC099552.4.1-1:1	XLOC_006661	linc-PAXIP1-4	NA	NA	NA	inter
LNCA_21_P0006618	2.4042764	A	2.890668	A	0.713808209987825	0	lncRNA	DQ372721	NA	DQ372721	NA	Hs.642590	XLOC_008580	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008580), lincRNA [TCONS_00017714]"	chr10:101288164-101288223	hs|10q24.2	Agilent_HUMAN_G3V2	DQ372721	DQ372721	chr10	101288164	101288223	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19149_PI429285431	5.7775564	P	5.8285995	P	0.965238188294267	0	lncRNA	20823-1_{1..2346}	lnc-RCC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-RCC1-1:1	NA	NA	     2345	NA	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70"	NA	Unknown
CUST_18361_PI429285431	1.262123	A	1.0550681	A	1.15432934327618	0	lncRNA	20089-1_{1..3000}	lnc-GLB1L2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLB1L2-1:5	chr11	134356408	134359407	+	lnc-GLB1L2-1	lnc-GLB1L2-1:5	ENSG00000255545	RP11-627G23.1	NA	NA	NA	inter
CUST_16858_PI429285431	2.5878499	A	1.5738474	A	2.01950609472773	0	lncRNA	18564-1_{1..469}	lnc-ZRANB1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZRANB1-2:2	chr10	126951913	126952381	+	lnc-ZRANB1-2	lnc-ZRANB1-2:2	XLOC_008659	linc-C10orf137-3	NA	NA	NA	inter
CUST_1401_PI429285431	2.0140038	A	2.2081664	A	0.874080101021401	0	lncRNA	1390-1_{1..1041}	"transcript_id ""ENST00000463200.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000463200.1"" | genecode_v17"	chr3	 94657107	 94658147	+	ENSG00000239589.1	ENST00000463200.1	RP11-118N24.3	RP11-118N24.3-001	NA	NA	NA	inter
CUST_10305_PI429285431	5.5419445	P	5.685833	P	0.90507640983444	0	lncRNA	11833-1_{1..249}	lnc-CD33-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD33-1:1	chr19	 51719157	 51719405	+	lnc-CD33-1	lnc-CD33-1:1	XLOC_013124	linc-CD33	CD33	NA	chr19:51709157-51729361	inter
CUST_3506_PI429285431	1.3887346	A	0.906512	A	1.39689404899645	0	lncRNA	3477-1_{1..672}	"transcript_id ""ENST00000603949.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603949.1"" | genecode_v17"	chr9	106854683	106855354	-	ENSG00000270332.1	ENST00000603949.1	RP11-82L2.1	RP11-82L2.1-001	SMC2	NA	chr9:106856541-106865354	inter
LNCA_21_P0013884	1.2149731	A	0.9982165	A	1.16211802769378	0	lncRNA	TCONS_l2_00030911	NA	NA	NA	NA	XLOC_l2_015901	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015901), lincRNA [TCONS_l2_00030911]"	chrY:23480282-23480341	hs|Yq11.223	Agilent_HUMAN_G3V2	TCONS_l2_00030911	TCONS_l2_00030911	chrY	 23480282	 23480341	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24001_PI429285431	6.001384	P	6.1683254	P	0.890729079884035	0	lncRNA	25555-1_{1..533}	lnc-IRX3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IRX3-5:1	chr16	 54972076	 54972608	-	lnc-IRX3-5	lnc-IRX3-5:1	ENSG00000259725.1	CTD-3032H12.1	IRX5	NA	chr16:54965111-54968397	inter
CUST_13114_PI429285431	0.92566764	A	0.9446079	A	0.986957413576857	0	lncRNA	14738-1_{1..329}	lnc-DMXL1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMXL1-4:2	chr5	117542415	117542743	+	lnc-DMXL1-4	lnc-DMXL1-4:2	XLOC_004524	linc-DMXL1-4	NA	NA	NA	inter
LNCA_21_P0008757	1.1219248	A	1.3610369	A	0.84726659824947	0	lncRNA	TCONS_00023739	NA	NA	NA	NA	XLOC_011529	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011529), lincRNA [TCONS_00023739]"	chr15:74448528-74448469	hs|15q24.1	Agilent_HUMAN_G3V2	TCONS_00023739	TCONS_00023739	chr15	 74448469	 74448528	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16013_PI429285431	1.3576578	A	0.92046314	A	1.35396895509214	0	lncRNA	17709-1_{1..2386}	lnc-VCAM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VCAM1-1:1	chr1	101169841	101172226	+	lnc-VCAM1-1	lnc-VCAM1-1:1	XLOC_000316	linc-VCAM1	NA	NA	NA	inter
CUST_29316_PI429285431	7.211796	P	7.0708876	P	1.10259915431028	0	lncRNA	31067-1_{1..374}	n332503|DQ925680|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468686|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468686|1.0384200|-0.0503771	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332503|DQ925680|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468686|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468686|1.0384200|-0.0503771	chr9	134473664	134474037	-	NA	NA	NA	NA	RAPGEF1	NA	chr9:134463664-134507278	inner
CUST_2178_PI429285431	2.993278	A	3.6458266	P	0.636155516796296	0	lncRNA	2170-1_{1..589}	"transcript_id ""ENST00000506819.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506819.1"" | genecode_v17"	chr5	 66995279	 66995867	-	ENSG00000250421.1	ENST00000506819.1	RP11-83M16.6	RP11-83M16.6-002	NA	NA	NA	inter
CUST_312_PI429201921	0.9510387	A	1.3391911	A	0.764107539137611	0	lncRNA	212-2_{3001..6000}	TC04002378.hg.1	 TCONS_l2_00021793-XLOC_l2_010989 // Broad TUCP // linc-ZFP42-7 chr4:+:188334717-188336851 // chr4 // 100 // 100 // 0 // --- // 0/// TCONS_l2_00020950-XLOC_l2_010989 // Broad TUCP // linc-ZFP42-7 chr4:+:188329843-188337228 // chr4 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00020949-XLOC_l2_010989 // Broad TUCP // linc-ZFP42-7 chr4:+:188329843-188337228 // chr4 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr4:+:188329843-188337228	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00020949-XLOC_l2_010989	linc-ZFP42-7	chr4	188329843	188337228	+	NA	NA	NA	NA	LOC729041	NA	chr1:46903225-46911374	Unknown
CUST_349_PI429285431	0.9977598	A	0.95854074	A	1.0275574527017	0	lncRNA	342-1_{1..357}	"transcript_id ""ENST00000437803.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437803.1"" | genecode_v17"	chr1	106615869	106616225	+	ENSG00000237480.1	ENST00000437803.1	RP5-947P14.1	RP5-947P14.1-001	NA	NA	NA	inter
CUST_44957_PI429285431	0.988542	A	0.92812407	A	1.04276779336654	0	lncRNA	49468-1_{1..1977}	"gi|335335005|ref|NR_038378.1| Homo sapiens uncharacterized LOC441242 (LOC441242), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|335335005|ref|NR_038378.1| Homo sapiens uncharacterized LOC441242 (LOC441242), non-coding RNA"	Chr7	 65111924	 65113900	-	441242	NR_038378.1	NA	NA	NA	"hg19_refFlat_CCT6A:range=chr7:56119542-561307785'pad=0,hg19_refFlat_CCT6A:range=chr7:56119542-561307785'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70"	NA	inter
CUST_36694_PI429285431	1.01828	A	1.0276793	A	0.993506078943102	0	lncRNA	37876-1_{1..689}	n345183|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_732|NULL|-1.2874300|-0.4932892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345183|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_732|NULL|-1.2874300|-0.4932892	chr12	 66185540	 66186228	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40737_PI429285431	3.0513906	P	2.1160772	A	1.91230600475218	0	lncRNA	41469-1_{1..3000}	n410449|NR_037591|lncRNA|Homosapiens||RefGeneNoncode|NR_037591||3.3896300|-0.2598315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410449|NR_037591|lncRNA|Homosapiens||RefGeneNoncode|NR_037591||3.3896300|-0.2598315	chr1	 33473540	 33476539	-	NA	NA	NA	NA	AK2	NA	chr1:33473541-33502512	inter
CUST_34696_PI429285431	7.265732	P	5.0645075	P	4.59869494647498	0	lncRNA	36146-2_{3001..4103}	n341602|D83780|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4073|NULL|16.7207000|-0.1508213	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341602|D83780|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4073|NULL|16.7207000|-0.1508213	chr8	126039508	126040610	-	NA	NA	NA	NA	KIAA0196	NA	chr8:126036502-126104061	inner
CUST_51643_PI429285431	4.9584255	P	5.1990256	P	0.846393175437161	0	lncRNA	55213-1_{1..951}	hg19_lincRNAsTranscripts_TCONS_l2_00011375 range=chr17:58200325-58210142 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011375 range=chr17:58200325-58210142 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 58200325	 58201275	-	NA	NA	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	inter
CUST_45643_PI429285431	1.2225556	A	0.9465323	A	1.21085263946151	0	lncRNA	50021-2_{3001..3848}	"gi|226061013|ref|NR_027430.1| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226061013|ref|NR_027430.1| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 3, non-coding RNA"	Chr10	 81808989	 81809836	-	219347	NR_027430.1	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80"	NA	inter
CUST_2664_PI429285431	1.0073041	A	0.9592496	A	1.03386979151452	0	lncRNA	2650-1_{1..404}	"transcript_id ""ENST00000442094.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442094.1"" | genecode_v17"	chr6	147997211	147997614	+	ENSG00000227681.1	ENST00000442094.1	RP11-307P5.1	RP11-307P5.1-002	NA	NA	NA	inter
CUST_45358_PI429285431	3.2837656	A	2.6277466	A	1.57572852398593	0	lncRNA	49795-1_{1..2591}	"gi|374088005|ref|NR_046175.1| Homo sapiens uncharacterized LOC286297 (LOC286297), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|374088005|ref|NR_046175.1| Homo sapiens uncharacterized LOC286297 (LOC286297), non-coding RNA"	Chr9	 67017375	 67019965	-	286297	NR_046175.1	NA	NA	NA	NA	NA	inter
CUST_25519_PI429285431	1.5035777	A	1.0185132	A	1.39964843966925	0	lncRNA	27050-1_{1..2224}	lnc-AL020996.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL020996.1-2:1	chr1	 25985256	 25987479	-	lnc-AL020996.1-2	lnc-AL020996.1-2:1	ENSG00000233478.1	RP1-187B23.1	MAN1C1	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40chr1:25975256-25995602"	NA	inner
CUST_3301_PI429285431	6.9570737	P	7.177579	P	0.858264778892551	0	lncRNA	3279-1_{1..489}	"transcript_id ""ENST00000521428.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521428.1"" | genecode_v17"	chr8	127510394	127510882	+	ENSG00000253220.1	ENST00000521428.1	RP11-103H7.2	RP11-103H7.2-001	NA	NA	NA	inter
CUST_17991_PI429285431	0.98356164	A	1.5675714	A	0.667107071766572	0	lncRNA	19725-1_{1..295}	lnc-REG3G-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-REG3G-3:3	chr2	 78354625	 78354919	+	lnc-REG3G-3	lnc-REG3G-3:3	XLOC_001543	linc-REG3G-2	NA	NA	NA	inter
CUST_34606_PI429285431	0.92318106	A	1.394881	A	0.721114401648799	0	lncRNA	36061-1_{1..2860}	n341487|AL133564|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3957|NULL|-1.2180400|-0.2903995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341487|AL133564|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3957|NULL|-1.2180400|-0.2903995	chr8	 38627550	 38630409	+	NA	NA	NA	NA	TACC1	NA	chr8:38617550-38640415	inner
CUST_28604_PI429285431	0.90424705	A	0.89954007	A	1.00326795808598	0	lncRNA	30286-1_{1..369}	n325967|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048113|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048113|-0.9475880|-0.3922436	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325967|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048113|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048113|-0.9475880|-0.3922436	chr10	 53986748	 53987116	-	NA	NA	NA	NA	PRKG1	NA	chr10:53976748-54055274	inner
CUST_19298_PI429285431	11.7052965	P	11.770403	P	0.955874752147974	0	lncRNA	20965-1_{1..469}	lnc-C1QTNF8-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1QTNF8-1:5	chr16	  1116919	  1117387	-	lnc-C1QTNF8-1	lnc-C1QTNF8-1:5	ENSG00000261713.1	RP11-161M6.4	SSTR5	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50chr16:1122756-1127236"	NA	inter
CUST_7987_PI429285431	0.9183288	A	1.4128329	A	0.709805618855403	0	lncRNA	9598-1_{1..2615}	lnc-RTKN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RTKN2-1:1	chr10	 63856300	 63858914	-	lnc-RTKN2-1	lnc-RTKN2-1:1	ENSG00000248301	ENST00000503286	ARID5B	"hg19_refFlat_ARID5B:range=chr10:63661469-638527895'pad=0,hg19_refFlat_ARID5B:range=chr10:63661469-638527895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ARID5B:range=chr10:63809239-638527895'pad=0,hg19_refFlat_ARID5B:range=chr10:63809239-638527895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70chr10:63846300-63856707"	NA	inner
CUST_18360_PI429285431	3.0820916	A	3.183245	A	0.932287352192079	0	lncRNA	20088-1_{1..1059}	lnc-BET1L-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BET1L-1:6	chr11	   131120	   132178	-	lnc-BET1L-1	lnc-BET1L-1:6	ENSG00000230724	RP11-304M2.2	NA	NA	NA	inter
CUST_7546_PI429285431	0.97313666	A	1.1650348	A	0.87545313798096	0	lncRNA	9182-1_{1..1130}	lnc-GSG2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GSG2-2:1	chr17	  4194101	  4195230	+	lnc-GSG2-2	lnc-GSG2-2:1	ENSG00000244779	ENST00000500236	UBE2G1	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70chr17:4184101-4205024"	NA	inner
CUST_17688_PI429285431	0.91813105	A	0.91258734	A	1.00384999923596	0	lncRNA	19417-1_{1..476}	lnc-EPHA4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPHA4-3:1	chr2	221631405	221631880	-	lnc-EPHA4-3	lnc-EPHA4-3:1	XLOC_002497	linc-OBSL1-1	NA	NA	NA	inter
LNCA_21_P0010000	0.99613047	A	0.929116	A	1.04754663377193	0	lncRNA	TCONS_00028310	NA	NA	NA	NA	XLOC_013643	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013643), lincRNA [TCONS_00028310]"	chr20:5489779-5489720	hs|20p12.3	Agilent_HUMAN_G3V2	TCONS_00028310	TCONS_00028310	chr20	  5489720	  5489779	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2763_PI429285431	0.90033054	A	0.9038662	A	0.997552267833395	0	lncRNA	2746-1_{1..432}	"transcript_id ""ENST00000437088.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437088.1"" | genecode_v17"	chr7	 12693804	 12694235	+	ENSG00000229233.1	ENST00000437088.1	AC011891.5	AC011891.5-001	SCIN	NA	chr7:12683804-12693228	inter
CUST_22148_PI429285431	9.562179	P	9.430826	P	1.09532044206001	0	lncRNA	23749-1_{1..425}	lnc-CHCHD5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHCHD5-2:1	chr2	113371790	113372214	+	lnc-CHCHD5-2	lnc-CHCHD5-2:1	ENSG00000243389.1	AC012442.5	NA	NA	NA	inter
CUST_37705_PI429285431	0.9121287	A	0.9050244	A	1.00493646993191	0	lncRNA	38799-1_{1..2290}	n346200|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1750|NULL|-1.2953600|-0.2659928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346200|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1750|NULL|-1.2953600|-0.2659928	chr22	 22652520	 22654809	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39665_PI429285431	1.2719661	A	0.90503633	A	1.28960547148623	0	lncRNA	40605-1_{1..1827}	n405294|NR_001434_3|lncRNA|Homosapiens||RefGeneNoncode|NR_001434_3||-1.0515200|-0.4099744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405294|NR_001434_3|lncRNA|Homosapiens||RefGeneNoncode|NR_001434_3||-1.0515200|-0.4099744	chr6	  1150035	  1151861	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5343_PI429285431	0.9506722	A	0.92196536	A	1.02009735131629	0	lncRNA	5281-1_{1..639}	"transcript_id ""ENST00000558449.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000558449.1"" | genecode_v17"	chr15	 96714824	 96715462	+	ENSG00000259359.1	ENST00000558449.1	RP11-327J17.2	RP11-327J17.2-001	NA	NA	NA	inter
CUST_51701_PI429285431	0.9088407	A	0.9015721	A	1.00505092271607	0	lncRNA	55259-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00011771 range=chr18:11638006-11677400 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011771 range=chr18:11638006-11677400 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr18	 11644006	 11647005	+	NA	NA	NA	NA	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NPIPL3:range=chr16:21413605-214364195'pad=0,hg19_refFlat_NPIPL3:range=chr16:21413605-214364195'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LOC100132247:range=chr16:22525123-225477065'pad=0,hg19_refFlat_LOC100132247:range=chr16:22525123-225477065'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ACSM1:range=chr16:20634808-207025105'pad=0,hg19_refFlat_ACSM1:range=chr16:20634808-207025105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60"	NA	inter
CUST_16418_PI429285431	6.128357	P	6.107918	P	1.01426806610264	0	lncRNA	18116-1_{1..374}	lnc-GABRB3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GABRB3-1:1	chr15	 26722868	 26723241	-	lnc-GABRB3-1	lnc-GABRB3-1:1	XLOC_011408	linc-ATP10A-2	NA	NA	NA	inter
CUST_1853_PI429285431	0.90545595	A	1.2909174	A	0.765534101183639	0	lncRNA	1843-1_{1..426}	"transcript_id ""ENST00000419264.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419264.1"" | genecode_v17"	chr4	118282556	118282981	+	ENSG00000228358.1	ENST00000419264.1	AC113617.1	AC113617.1-004	NA	NA	NA	inter
CUST_43561_PI429285431	4.8301725	P	5.3225665	P	0.710844547144444	0	lncRNA	48335-1_{1..905}	"gi|198041787|ref|NR_024126.1| Homo sapiens ATP1A1 opposite strand (ATP1A1OS), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|198041787|ref|NR_024126.1| Homo sapiens ATP1A1 opposite strand (ATP1A1OS), transcript variant 3, non-coding RNA"	Chr1	116948040	116948944	-	84852	NR_024126.1	NA	NA	NA	NA	NA	inter
CUST_3501_PI429285431	1.3269931	A	1.2191045	A	1.07764992937176	0	lncRNA	3472-1_{1..509}	"transcript_id ""ENST00000605377.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000605377.1"" | genecode_v17"	chr9	102117619	102118127	-	ENSG00000271086.1	ENST00000605377.1	RP11-13B9.5	RP11-13B9.5-002	NA	NA	NA	inter
CUST_7045_PI429285431	4.540488	P	4.550289	P	0.993229488378354	0	lncRNA	6990-1_{1..707}	"transcript_id ""ENST00000447570.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447570.1"" | genecode_v17"	chrX	 40122219	 40122925	+	ENSG00000236393.1	ENST00000447570.1	RP11-320G24.1	RP11-320G24.1-002	NA	NA	NA	inter
CUST_33825_PI429285431	4.047503	P	1.8745778	A	4.50936784348125	0	lncRNA	35373-1_{1..1003}	n340611|BC022429|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3073|NULL|-1.1628100|-0.3184766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340611|BC022429|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3073|NULL|-1.1628100|-0.3184766	chr5	130540151	130541153	+	NA	NA	NA	NA	LYRM7	NA	chr5:130530151-130541119	inner
CUST_32518_PI429285431	1.5583913	A	0.9009634	A	1.57726809279793	0	lncRNA	34185-1_{1..469}	n339123|U52050|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1553|NULL|-1.0919700|-0.3695114	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339123|U52050|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1553|NULL|-1.0919700|-0.3695114	chr16	 23073087	 23073555	+	NA	NA	NA	NA	USP31	NA	chr16:23072728-23083553	inner
CUST_10378_PI429285431	0.91775346	A	0.9108545	A	1.00479344665649	0	lncRNA	11907-1_{1..2081}	lnc-MAP3K9-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP3K9-3:5	chr14	 71786892	 71788972	-	lnc-MAP3K9-3	lnc-MAP3K9-3:5	XLOC_011064	linc-MAP3K9-1	NA	NA	NA	inter
CUST_2173_PI429285431	2.6703737	A	2.922845	A	0.839457214039682	0	lncRNA	2164-1_{1..507}	"transcript_id ""ENST00000602982.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602982.1"" | genecode_v17"	chr5	 65220457	 65220963	-	ENSG00000269961.1	ENST00000602982.1	CTD-2033C11.1	CTD-2033C11.1-001	ERBB2IP	NA	chr5:65222384-65230963	inter
LNCA_21_P0007304	3.477333	P	3.9432876	P	0.723991869045996	0	lncRNA	TCONS_00019545	NA	NA	NA	NA	XLOC_009343	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009343), lincRNA [TCONS_00019545]"	chr11:134306658-134308433	hs|11q25	Agilent_HUMAN_G3V2	TCONS_00019545	TCONS_00019545	chr11	134306658	134308433	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013619	0.9764256	A	0.92135864	A	1.03890732112465	0	lncRNA	TCONS_l2_00029176	NA	NA	NA	NA	XLOC_l2_015098	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015098), lincRNA [TCONS_l2_00029176]"	chr9:2531046-2530987	hs|9p24.2	Agilent_HUMAN_G3V2	TCONS_l2_00029176	TCONS_l2_00029176	chr9	  2530987	  2531046	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36928_PI429285431	0.9014653	A	1.2802762	A	0.769071214370686	0	lncRNA	38083-1_{1..271}	n345397|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_946|NULL|-1.5412900|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345397|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_946|NULL|-1.5412900|-1.0000000	chr21	 26869013	 26869283	-	NA	NA	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20"	NA	inter
CUST_8068_PI429285431	0.92024845	A	0.9032699	A	1.01183815689827	0	lncRNA	9675-1_{1..932}	lnc-NQO2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NQO2-4:1	chr6	  2900150	  2901081	+	lnc-NQO2-4	lnc-NQO2-4:1	ENSG00000247767	ENST00000499208	SERPINB9	"hg19_refFlat_SERPINB9:range=chr6:2890397-29008455'pad=0,hg19_refFlat_SERPINB9:range=chr6:2890397-29008455'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50chr6:2890150-2903545"	NA	inner
CUST_28676_PI429285431	0.91867507	A	0.9207716	A	0.998547851530974	0	lncRNA	30372-1_{1..740}	n326059|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046747|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046747|-1.2286100|-0.4770239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326059|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046747|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046747|-1.2286100|-0.4770239	chr10	 11028874	 11029613	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23090_PI429285431	0.91188854	A	0.9041479	A	1.00537982234265	0	lncRNA	24662-1_{1..2724}	lnc-TMEM144-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM144-1:5	chr4	159120240	159122963	+	lnc-TMEM144-1	lnc-TMEM144-1:5	ENSG00000248429.1	RP11-597D13.9	TMEM144	NA	chr4:159131401-159132065	inter
CUST_21342_PI429285431	3.5733716	P	3.9985948	P	0.74472350613901	0	lncRNA	22965-1_{1..406}	lnc-CXorf67-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CXorf67-1:2	chrX	 51208259	 51208664	+	lnc-CXorf67-1	lnc-CXorf67-1:2	ENSG00000226530.1	RP11-348F1.2	NA	NA	NA	inter
CUST_13913_PI429285431	3.488611	P	3.5641582	P	0.948982113125237	0	lncRNA	15560-1_{1..563}	lnc-EGFL7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EGFL7-1:1	chr9	139547848	139548410	+	lnc-EGFL7-1	lnc-EGFL7-1:1	XLOC_007615	linc-EGFL7-1	EGFL7	NA	chr9:139557377-139557858	inter
CUST_7778_PI429285431	0.92056215	A	0.908092	A	1.00868111351507	0	lncRNA	9403-1_{1..1926}	lnc-PLEKHG6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLEKHG6-1:1	chr12	  6446640	  6448565	+	lnc-PLEKHG6-1	lnc-PLEKHG6-1:1	ENSG00000251534	ENST00000504738	PLEKHG6	"hg19_refFlat_TNFRSF1A:range=chr12:6438478-64509805'pad=0,hg19_refFlat_TNFRSF1A:range=chr12:6438478-64509805'pad=0 3'pad=0 strand=- repeatMasking=none,-107.80chr12:6436640-6437672"	NA	inner
CUST_32556_PI429285431	1.2574176	A	1.3595642	A	0.931645754960357	0	lncRNA	34220-1_{1..2525}	n339171|BC008846|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1602|NULL|-0.7533650|-0.2530509	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339171|BC008846|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1602|NULL|-0.7533650|-0.2530509	chr2	232674555	232677079	+	NA	NA	NA	NA	COPS7B	NA	chr2:232664555-232673434	inter
CUST_49693_PI429285431	5.8677096	P	6.5828323	P	0.609153321656679	0	lncRNA	53470-1_{1..958}	hg19_lincRNAsTranscripts_TCONS_l2_00025627 range=chr7:5888781-5894022 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025627 range=chr7:5888781-5894022 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  5888781	  5889738	+	NA	NA	NA	NA	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_25964_PI429285431	4.41573	P	4.740322	P	0.798524180299371	0	lncRNA	27484-1_{1..407}	lnc-C8orf83-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C8orf83-2:4	chr8	 93770732	 93771138	-	lnc-C8orf83-2	lnc-C8orf83-2:4	ENSG00000248858.2	RP11-100L22.2	NA	NA	NA	inter
CUST_19753_PI429285431	5.931589	P	5.8086524	P	1.08894915983527	0	lncRNA	21411-1_{1..468}	lnc-SENP5-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SENP5-2:5	chr3	196731365	196731832	+	lnc-SENP5-2	lnc-SENP5-2:5	ENSG00000228109.1	MFI2-AS1	MFI2	"hg19_refFlat_MFI2:range=chr3:196730243-1967565735'pad=0,hg19_refFlat_MFI2:range=chr3:196730243-1967565735'pad=0 3'pad=0 strand=- repeatMasking=none,-99.50chr3:196721365-196741611"	NA	inner
CUST_20855_PI429285431	4.7358007	P	4.8910666	P	0.897966855304027	0	lncRNA	22486-1_{1..400}	lnc-FAM45A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FAM45A-1:1	chr10	120970993	120971392	+	lnc-FAM45A-1	lnc-FAM45A-1:1	ENSG00000228485.1	RP11-567J24.4	GRK5	NA	chr10:120967197-120981272	inner
CUST_24108_PI429285431	2.409103	A	1.5710967	A	1.7875781307414	0	lncRNA	25659-1_{1..329}	lnc-TMEM178-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM178-1:11	chr2	 39826506	 39826834	+	lnc-TMEM178-1	lnc-TMEM178-1:11	ENSG00000231312.2	AC007246.3	NA	NA	NA	inter
CUST_38136_PI429285431	2.731894	A	2.1145225	A	1.53407764021742	0	lncRNA	39207-1_{1..1917}	n381280|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gfk.1||0.6106830|-0.2615668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381280|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gfk.1||0.6106830|-0.2615668	chr1	168218461	168220377	+	NA	NA	NA	NA	SFT2D2	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50chr1:168208461-168212088"	NA	inter
CUST_6934_PI429285431	4.347871	P	2.8328466	A	2.85803661644998	0	lncRNA	6884-2_{3001..3215}	"transcript_id ""ENST00000447720.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447720.1"" | genecode_v17"	chr22	 21658279	 21658493	-	ENSG00000206142.5	ENST00000447720.1	FAM230C	FAM230C-001	RIMBP3B	NA	chr22:21645279-21689331	inter
CUST_41008_PI429285431	5.408928	P	4.326703	P	2.11729897396034	0	lncRNA	41669-2_{3001..5563}	n411584|NR_040053|lncRNA|Homosapiens||RefGeneNoncode|NR_040053||2.3284300|-0.2514129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411584|NR_040053|lncRNA|Homosapiens||RefGeneNoncode|NR_040053||2.3284300|-0.2514129	chr12	 56599287	 56601849	-	NA	NA	NA	NA	OBFC2B	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.61;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70chr12:56618125-56623638"	NA	inner
CUST_9437_PI429285431	0.9297195	A	0.91632855	A	1.00932510965235	0	lncRNA	10943-1_{1..338}	lnc-CDYL2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDYL2-5:1	chr16	 80555129	 80555466	-	lnc-CDYL2-5	lnc-CDYL2-5:1	XLOC_012018	linc-MAF-1	NA	NA	NA	inter
LNCA_21_P0008154	4.414505	P	4.3729324	P	1.02923512622085	0	lncRNA	TCONS_00021988	NA	NA	NA	NA	XLOC_010590	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010590), lincRNA [TCONS_00021988]"	chr13:45461055-45458817	hs|13q14.12	Agilent_HUMAN_G3V2	TCONS_00021988	TCONS_00021988	chr13	 45458817	 45461055	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3012_PI429285431	6.4491267	P	6.386535	P	1.04434016024568	0	lncRNA	2991-1_{1..2150}	"transcript_id ""ENST00000304233.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000304233.3"" | genecode_v17"	chr8	 11433822	 11435971	+	ENSG00000170983.3	ENST00000304233.3	LINC00208	LINC00208-001	NA	NA	NA	inter
CUST_36000_PI429285431	6.6168985	P	6.5872064	P	1.020794244533	0	lncRNA	37335-2_{3001..4926}	n344610|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_158|NULL|-1.5903400|-0.2935589	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344610|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_158|NULL|-1.5903400|-0.2935589	chr10	 43014215	 43016140	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18217_PI429285431	10.542328	P	11.453604	P	0.531714605127547	0	lncRNA	19952-1_{1..446}	lnc-NLGN4X-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NLGN4X-1:2	chrX	  5644071	  5644516	-	lnc-NLGN4X-1	lnc-NLGN4X-1:2	ENSG00000236120	RP11-733O18.1	NA	NA	NA	inter
CUST_3804_PI429285431	1.7043606	A	1.0871263	A	1.53393175668799	0	lncRNA	3772-1_{1..575}	"transcript_id ""ENST00000366253.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000366253.2"" | genecode_v17"	chr10	110307733	110308307	-	ENSG00000203434.2	ENST00000366253.2	RP11-163F15.1	RP11-163F15.1-001	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00"	NA	inter
CUST_14867_PI429285431	0.9140791	A	1.2265658	A	0.805252589449284	0	lncRNA	16531-1_{1..502}	lnc-RP11-204N11.1.1-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-204N11.1.1-3:8	chr14	 98444314	 98444815	-	lnc-RP11-204N11.1.1-3	lnc-RP11-204N11.1.1-3:8	XLOC_011117	linc-ATG2B-2	NA	NA	NA	inter
CUST_32721_PI429285431	2.4350495	A	2.8958664	A	0.726574732347187	0	lncRNA	34363-1_{1..3000}	n339351|BC036781|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1783|NULL|0.2002600|-0.0916397	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339351|BC036781|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1783|NULL|0.2002600|-0.0916397	chr16	 90086146	 90089145	-	NA	NA	NA	NA	DBNDD1	"hg19_refFlat_GAS8:range=chr16:90089130-901097535'pad=0,hg19_refFlat_GAS8:range=chr16:90089130-901097535'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.20chr16:90076146-90085937"	NA	inter
CUST_21202_PI429285431	2.5965128	A	2.5307782	A	1.04661772714618	0	lncRNA	22827-1_{1..232}	lnc-IFIT2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IFIT2-1:3	chr10	 91051744	 91051975	+	lnc-IFIT2-1	lnc-IFIT2-1:3	ENSG00000232110.2	RP11-149I23.3	IFIT2	NA	chr10:91061706-91061882	inter
CUST_18261_PI429285431	0.90274817	A	0.90798795	A	0.996374648778169	0	lncRNA	19995-1_{1..353}	lnc-PRL-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRL-7:1	chr6	 23177142	 23177494	-	lnc-PRL-7	lnc-PRL-7:1	ENSG00000233358	RP1-209A6.1	NA	NA	NA	inter
CUST_10806_PI429285431	0.90072024	A	0.907368	A	0.99540272387267	0	lncRNA	12343-1_{1..881}	lnc-ICOSLG-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ICOSLG-5:2	chr21	 45588105	 45588985	-	lnc-ICOSLG-5	lnc-ICOSLG-5:2	XLOC_014111	linc-CSTB-6	NA	NA	NA	inter
CUST_2516_PI429285431	0.9185735	A	0.91198504	A	1.00457721607044	0	lncRNA	2505-2_{3001..6000}	"transcript_id ""ENST00000429998.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429998.2"" | genecode_v17"	chr6	 34250456	 34253455	+	ENSG00000225339.2	ENST00000429998.2	RP11-513I15.6	RP11-513I15.6-001	NUDT3	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60chr6:34254971-34264545"	NA	inter
CUST_33656_PI429285431	0.90000683	A	0.89637536	A	1.00252031385649	0	lncRNA	35219-1_{1..2446}	n340419|AK091007|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2880|NULL|-1.1657700|-0.4061721	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340419|AK091007|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2880|NULL|-1.1657700|-0.4061721	chr5	 20468538	 20470983	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28176_PI429285431	2.6996315	A	3.3719478	P	0.627498406269181	0	lncRNA	29802-1_{1..616}	n325455|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323350|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323350|-1.0470800|-0.3489525	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325455|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323350|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323350|-1.0470800|-0.3489525	chr2	  6706687	  6707302	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19747_PI429285431	0.92724067	A	1.1605871	A	0.850659438699536	0	lncRNA	21405-1_{1..371}	lnc-ALG14-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALG14-2:1	chr1	 95729541	 95729911	-	lnc-ALG14-2	lnc-ALG14-2:1	ENSG00000228852.1	RP11-57H12.5	NA	NA	NA	inter
CUST_48247_PI429285431	4.3083153	P	3.7937658	P	1.42854798768489	0	lncRNA	52109-1_{1..331}	hg19_lincRNAsTranscripts_TCONS_l2_00000962 range=chr1:701707-714032 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000962 range=chr1:701707-714032 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	   701707	   702037	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28064_PI429285431	3.5194492	P	4.2453284	P	0.604628462656104	0	lncRNA	29682-1_{1..346}	n325330|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325754|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325754|-0.8318210|-0.1404748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325330|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325754|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325754|-0.8318210|-0.1404748	chr2	 42096268	 42096613	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00"	NA	inter
CUST_2794_PI429285431	0.90847135	A	0.92598134	A	0.987936356111686	0	lncRNA	2778-1_{1..353}	"transcript_id ""ENST00000440438.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440438.2"" | genecode_v17"	chr7	 30586782	 30587134	-	ENSG00000234133.2	ENST00000440438.2	AC005154.9	AC005154.9-001	NA	NA	NA	inter
LNCA_21_P0006325	3.3734775	P	3.6894796	P	0.80329282747585	0	lncRNA	TCONS_00016488	NA	NA	NA	NA	XLOC_007866	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007866), lincRNA [TCONS_00016488]"	chr9:132174597-132174538	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_00016488	TCONS_00016488	chr9	132174538	132174597	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31719_PI429285431	0.9013443	A	0.8992718	A	1.00143757986039	0	lncRNA	33461-1_{1..3000}	n338249|AK126681|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|642|NULL|-0.1811200|-0.3971985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338249|AK126681|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|642|NULL|-0.1811200|-0.3971985	chr14	 33348451	 33351450	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2165_PI429285431	1.4559	A	1.6795123	A	0.856418401650011	0	lncRNA	2157-1_{1..785}	"transcript_id ""ENST00000438117.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438117.2"" | genecode_v17"	chr5	 56066626	 56067410	+	ENSG00000228650.2	ENST00000438117.2	AC008940.1	AC008940.1-001	NA	NA	NA	inter
CUST_50829_PI429285431	8.918673	P	9.2243185	P	0.809080131654647	0	lncRNA	54477-3_{6001..7824}	hg19_lincRNAsTranscripts_TCONS_l2_00004566 range=chr11:65265310-65273493 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004566 range=chr11:65265310-65273493 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65271310	 65273133	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13730_PI429285431	3.1818988	P	1.5528464	A	3.09309769191096	0	lncRNA	15372-1_{1..345}	lnc-PMP22-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PMP22-2:3	chr17	 15182656	 15183000	-	lnc-PMP22-2	lnc-PMP22-2:3	XLOC_012397	linc-PMP22-1	NA	NA	NA	inter
CUST_51653_PI429285431	4.607234	P	3.6898053	P	1.88874599994331	0	lncRNA	55222-1_{1..431}	hg19_lincRNAsTranscripts_TCONS_l2_00011394 range=chr17:60366650-60374387 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011394 range=chr17:60366650-60374387 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 60366650	 60367080	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27719_PI429285431	2.1241052	A	2.1743846	A	0.965749278667592	0	lncRNA	29299-1_{1..770}	n324932|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079826|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079826|-0.8771950|-0.2460953	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324932|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079826|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079826|-0.8771950|-0.2460953	chr20	 55123377	 55124146	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5551_PI429285431	0.9041861	A	0.9055544	A	0.999052016333534	0	lncRNA	5481-1_{1..286}	"transcript_id ""ENST00000565771.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565771.1"" | genecode_v17"	chr16	 52641674	 52641959	-	ENSG00000260393.1	ENST00000565771.1	RP11-297L17.3	RP11-297L17.3-001	NA	NA	NA	inter
CUST_40659_PI429285431	1.9422449	A	2.208881	A	0.831255507931931	0	lncRNA	41395-3_{6001..9000}	n410211|NR_037163|lncRNA|Homosapiens||RefGeneNoncode|NR_037163||7.4038300|-0.3293164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410211|NR_037163|lncRNA|Homosapiens||RefGeneNoncode|NR_037163||7.4038300|-0.3293164	chr1	167196122	167199121	+	NA	NA	NA	NA	POU2F1	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr1:167180122-167396582"	NA	inner
CUST_50791_PI429285431	3.5470946	P	4.2148085	P	0.629503410824086	0	lncRNA	54445-2_{3001..4598}	hg19_lincRNAsTranscripts_TCONS_l2_00004349 range=chr11:3422780-3433649 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004349 range=chr11:3422780-3433649 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	  3425780	  3427377	+	NA	NA	NA	NA	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0,hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0,hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0,hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0,hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80"	NA	inter
CUST_26676_PI429285431	4.134854	P	4.676336	P	0.687064763200721	0	lncRNA	28173-1_{1..3000}	lncrnadb|megamind_Human_NR_038861__(LOC100507043_upstream_of_BDKRB2)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncrnadb20130808	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lncrnadb|megamind_Human_NR_038861__(LOC100507043_upstream_of_BDKRB2)	NA	NA	     2999	NA	NA	NA	NA	NA	NA	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40"	NA	Unknown
CUST_45488_PI429285431	6.3237543	P	7.2251563	P	0.53536621360227	0	lncRNA	49900-2_{3001..4525}	"gi|236460817|ref|NR_027653.1| Homo sapiens Kruppel-like factor 6 (KLF6), transcript variant D, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|236460817|ref|NR_027653.1| Homo sapiens Kruppel-like factor 6 (KLF6), transcript variant D, non-coding RNA"	Chr10	  3821188	  3822712	-	1316	NR_027653.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0009135	0.9271182	A	0.9224734	A	1.00322471827747	0	lncRNA	TCONS_00025060	NA	NA	NA	NA	XLOC_012017	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012017), lincRNA [TCONS_00025060]"	chr16:79749315-79749256	hs|16q23.2	Agilent_HUMAN_G3V2	TCONS_00025060	TCONS_00025060	chr16	 79749256	 79749315	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41386_PI429285431	0.97003454	A	0.9207542	A	1.03474863111081	0	lncRNA	42489-1_{1..82}	ENST00000385010 ncrna:miRNA chromosome:GRCh37:14:101500092:101500173:1 gene:ENSG00000207743 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385010 ncrna:miRNA chromosome:GRCh37:14:101500092:101500173:1 gene:ENSG00000207743 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101500092	101500173	+	ENSG00000207743	ENST00000385010	NA	NA	NA	NA	NA	inter
CUST_5749_PI429285431	1.0510299	A	1.5716368	A	0.697078530748356	0	lncRNA	5674-1_{1..2201}	"transcript_id ""ENST00000428142.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428142.1"" | genecode_v17"	chr17	 16879313	 16881513	-	ENSG00000230709.1	ENST00000428142.1	AC104024.1	AC104024.1-001	TNFRSF13B	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10chr17:16869313-16875402"	NA	inter
CUST_12431_PI429285431	1.9033948	A	1.8412118	A	1.04404435180378	0	lncRNA	14044-1_{1..567}	lnc-RALGDS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RALGDS-2:1	chr9	135905537	135906103	-	lnc-RALGDS-2	lnc-RALGDS-2:1	XLOC_007879	linc-TSC1-2	GTF3C5	NA	chr9:135906062-135915802	inter
LNCA_21_P0013550	1.088702	A	2.5608506	A	0.360445089506413	0	lncRNA	ENST00000427722	NA	NA	NA	NA	XLOC_l2_014694	NA	ENST00000427722	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014694), lincRNA [TCONS_l2_00028607]"	chr9:3691567-3691626	hs|9p24.2	Agilent_HUMAN_G3V2	ENST00000427722	ENST00000427722	chr9	  3691567	  3691626	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42164_PI429285431	0.92771596	A	0.92100286	A	1.00466400912755	0	lncRNA	44199-1_{1..112}	ENST00000408783 ncrna:miRNA chromosome:GRCh37:X:113949650:113949761:1 gene:ENSG00000221710 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408783 ncrna:miRNA chromosome:GRCh37:X:113949650:113949761:1 gene:ENSG00000221710 gene_biotype:miRNA transcript_biotype:miRNA	chrX	113949650	113949761	+	ENSG00000221710	ENST00000408783	NA	NA	HTR2C	NA	chrX:113939650-113959761	inner
CUST_26682_PI429285431	0.92651373	A	0.9181701	A	1.00580011954377	0	lncRNA	28179-1_{1..238}	n121|AC002067|scaRNA|Homosapiens|U90|NONCODEv2.0|n121|NULL|-1.3142100|-0.2923973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n121|AC002067|scaRNA|Homosapiens|U90|NONCODEv2.0|n121|NULL|-1.3142100|-0.2923973	chr7	103755327	103755564	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19345_PI429285431	1.3811507	A	0.90859574	A	1.38756461952362	0	lncRNA	21011-1_{1..362}	lnc-MARCH11-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MARCH11-2:2	chr5	 15607269	 15607630	-	lnc-MARCH11-2	lnc-MARCH11-2:2	ENSG00000250250.1	CTD-2350J17.1	FBXL7	NA	chr5:15597269-15617358	inner
CUST_42608_PI429285431	4.328289	P	5.224552	P	0.537276633200641	0	lncRNA	45470-1_{1..137}	ENST00000384158 ncrna:snoRNA chromosome:GRCh37:2:232320511:232320647:-1 gene:ENSG00000206885 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384158 ncrna:snoRNA chromosome:GRCh37:2:232320511:232320647:-1 gene:ENSG00000206885 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	232320511	232320647	-	ENSG00000206885	ENST00000384158	NA	NA	NCL	NA	chr2:232319459-232329205	inner
CUST_6177_PI429285431	4.345093	P	4.383568	P	0.973683635381074	0	lncRNA	6101-1_{1..2190}	"transcript_id ""ENST00000582983.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582983.1"" | genecode_v17"	chr18	 47025760	 47027949	+	ENSG00000264464.1	ENST00000582983.1	RP11-110H1.8	RP11-110H1.8-001	RPL17-C18ORF32	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.81;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60chr18:47015760-47018935"	NA	inter
LNCA_21_P0007448	4.945036	P	5.376682	P	0.74141540672308	0	lncRNA	TCONS_00019978	NA	NA	NA	NA	XLOC_009254	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009254), lincRNA [TCONS_00019978]"	chr11:94475786-94475845	hs|11q21	Agilent_HUMAN_G3V2	TCONS_00019978	TCONS_00019978	chr11	 94475786	 94475845	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46801_PI429285431	1.5167277	A	1.4618939	A	1.03873943251954	0	lncRNA	50947-1_{1..656}	"gi|343478245|ref|NR_037584.2| Homo sapiens uncharacterized LOC100506677 (AA06), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|343478245|ref|NR_037584.2| Homo sapiens uncharacterized LOC100506677 (AA06), non-coding RNA"	Chr17	 31856806	 31857461	-	100506677	NR_037584.2	NA	NA	NA	NA	NA	inter
CUST_38335_PI429285431	13.644545	P	12.979052	P	1.58611018867123	0	lncRNA	39381-1_{1..2420}	n382059|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vfo.1||5.5962500|-0.2953864	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382059|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vfo.1||5.5962500|-0.2953864	chr13	 52033095	 52035514	+	NA	NA	NA	NA	INTS6	NA	chr13:52023095-52027275	inter
CUST_11210_PI429285431	0.95698154	A	0.92465895	A	1.02265717359263	0	lncRNA	12767-1_{1..690}	lnc-C12orf42-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C12orf42-1:1	chr12	103517823	103518512	-	lnc-C12orf42-1	lnc-C12orf42-1:1	XLOC_010177	linc-PAH-2	NA	NA	NA	inter
CUST_30152_PI429285431	0.98099256	A	0.9326464	A	1.0340788231788	0	lncRNA	31926-1_{1..545}	n334825|AJ276427|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246335|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246335|-1.2836700|-0.3226491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334825|AJ276427|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246335|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246335|-1.2836700|-0.3226491	chr6	  2836631	  2837175	+	NA	NA	NA	NA	SERPINB1	NA	chr6:2833733-2842081	inter
CUST_3964_PI429285431	0.9253454	A	0.9295195	A	0.997110915813012	0	lncRNA	3934-1_{1..2466}	"transcript_id ""ENST00000536405.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536405.1"" | genecode_v17"	chr11	 61513965	 61516430	-	ENSG00000124915.6	ENST00000536405.1	RP11-467L20.10	RP11-467L20.10-002	DAGLA	NA	chr11:61503965-61514474	inner
CUST_24845_PI429285431	2.057937	A	2.4183867	A	0.77892174545269	0	lncRNA	26385-1_{1..551}	lnc-IL34-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL34-1:1	chr16	 70781476	 70782026	+	lnc-IL34-1	lnc-IL34-1:1	ENSG00000260156.1	RP11-394B2.6	VAC14	NA	chr16:70771476-70791829	inner
LNCA_21_P0001106	3.8596754	P	4.229849	P	0.773689392853839	0	lncRNA	ENST00000451217	NA	NA	NA	NA	XLOC_000735	NA	ENST00000451217	NA	NA	"BROAD Institute lincRNA (XLOC_000735), lincRNA [TCONS_00000482]"	chr1:23875754-23875695	hs|1p36.12	Agilent_HUMAN_G3V2	ENST00000451217	ENST00000451217	chr1	 23875695	 23875754	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42442_PI429285431	0.9226892	A	0.93081254	A	0.994385152294775	0	lncRNA	45167-1_{1..62}	ENST00000515891 ncrna:snoRNA chromosome:GRCh37:16:70902110:70902171:1 gene:ENSG00000251700 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515891 ncrna:snoRNA chromosome:GRCh37:16:70902110:70902171:1 gene:ENSG00000251700 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 70902110	 70902171	+	ENSG00000251700	ENST00000515891	NA	NA	HYDIN	NA	chr16:70892110-70912171	inner
CUST_46703_PI429285431	8.939024	P	9.5021925	P	0.6768140862056	0	lncRNA	50862-1_{1..1742}	"gi|237858583|ref|NR_027702.1| Homo sapiens cyclin-dependent kinase 10 (CDK10), transcript variant e, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237858583|ref|NR_027702.1| Homo sapiens cyclin-dependent kinase 10 (CDK10), transcript variant e, non-coding RNA"	Chr16	 89753076	 89754817	+	8558	NR_027702.1	NA	NA	NA	NA	NA	inter
CUST_38979_PI429285431	9.022876	P	8.500921	P	1.43589972188195	0	lncRNA	39963-1_{1..1781}	n385210|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003twe.2||3.1159300|-0.3059668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385210|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003twe.2||3.1159300|-0.3059668	chr7	 72300079	 72301859	+	NA	NA	NA	NA	TYW1B	NA	chr7:72290079-72298813	inter
CUST_23631_PI429285431	4.635233	P	4.9902554	P	0.78185750352629	0	lncRNA	25197-1_{1..3000}	lnc-CALML5-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALML5-2:3	chr10	  5563879	  5566878	-	lnc-CALML5-2	lnc-CALML5-2:3	ENSG00000205488.3	RP11-116G8.4	CALML3	NA	chr10:5566924-5568225	inter
CUST_17023_PI429285431	4.626126	P	4.625188	P	1.00065038346303	0	lncRNA	18734-1_{1..396}	lnc-MRPS9-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPS9-2:2	chr2	105721757	105722152	+	lnc-MRPS9-2	lnc-MRPS9-2:2	XLOC_001608	linc-GPR45-2	MRPS9	NA	chr2:105711757-105716418	inter
CUST_18433_PI429285431	0.89923894	A	1.3251375	A	0.744374964868502	0	lncRNA	20155-2_{3001..3242}	lnc-FAM172A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM172A-1:1	chr5	 92939063	 92939304	-	lnc-FAM172A-1	lnc-FAM172A-1:1	ENSG00000250089	RP11-65F13.3	NR2F1	NA	chr5:92926063-92929788	inter
CUST_40299_PI429285431	0.90563565	A	0.9220516	A	0.988685822756974	0	lncRNA	41103-1_{1..1078}	n408301|NR_028511|lncRNA|Homosapiens||RefGeneNoncode|NR_028511||2.3810400|-0.1683669	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408301|NR_028511|lncRNA|Homosapiens||RefGeneNoncode|NR_028511||2.3810400|-0.1683669	chr6	132929363	132930440	-	NA	NA	NA	NA	TAAR2	NA	chr6:132938289-132940441	inter
CUST_31415_PI429285431	6.955151	P	7.06327	P	0.927796944434468	0	lncRNA	33187-1_{1..230}	n337880|AX810709|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|263|NULL|-0.9770820|-0.0457575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337880|AX810709|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|263|NULL|-0.9770820|-0.0457575	chrX	150891432	150891661	-	NA	NA	NA	NA	FATE1	NA	chrX:150884508-150891666	inner
CUST_38802_PI429285431	3.9247391	P	3.7904518	P	1.09755048332161	0	lncRNA	39795-2_{3001..3771}	n384517|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003iij.1||1.9397000|-0.3509524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384517|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003iij.1||1.9397000|-0.3509524	chr4	141375563	141376333	-	NA	NA	NA	NA	LOC152586	NA	chr4:141364529-141419501	inter
CUST_6046_PI429285431	0.92842245	A	0.97776943	A	0.966373648318076	0	lncRNA	5972-1_{1..758}	"transcript_id ""ENST00000584867.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584867.1"" | genecode_v17"	chr18	  1883705	  1884462	-	ENSG00000263745.1	ENST00000584867.1	RP11-161I6.2	RP11-161I6.2-001	NA	NA	NA	inter
CUST_8313_PI429285431	6.3662796	P	5.936231	P	1.34727896182428	0	lncRNA	9897-1_{1..1643}	lnc-EPS8L1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EPS8L1-2:1	chr19	 55688452	 55690094	+	lnc-EPS8L1-2	lnc-EPS8L1-2:1	ENSG00000249659	ENST00000509804	PTPRH	"hg19_refFlat_DNAAF3:range=chr19:55670430-556777815'pad=0,hg19_refFlat_DNAAF3:range=chr19:55670430-556777815'pad=0 3'pad=0 strand=- repeatMasking=none,-103.30;hg19_refFlat_DNAAF3:range=chr19:55670430-556780165'pad=0,hg19_refFlat_DNAAF3:range=chr19:55670430-556780165'pad=0 3'pad=0 strand=- repeatMasking=none,-103.30;hg19_refFlat_DNAAF3:range=chr19:55670430-556772155'pad=0,hg19_refFlat_DNAAF3:range=chr19:55670430-556772155'pad=0 3'pad=0 strand=- repeatMasking=none,-103.30chr19:55692615-55698908"	NA	inner
CUST_1062_PI429285431	0.9838624	A	0.9339529	A	1.03519998389607	0	lncRNA	1052-1_{1..624}	"transcript_id ""ENST00000455174.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455174.2"" | genecode_v17"	chr2	126867676	126868299	-	ENSG00000226813.2	ENST00000455174.2	AC114813.1	AC114813.1-001	NA	NA	NA	inter
CUST_22155_PI429285431	0.9234081	A	1.3978051	A	0.719767566773856	0	lncRNA	23756-1_{1..462}	lnc-DHX38-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHX38-4:1	chr16	 72821062	 72821523	+	lnc-DHX38-4	lnc-DHX38-4:1	ENSG00000259768.3	RP5-991G20.1	ZFHX3	"hg19_refFlat_ZFHX3:range=chr16:72821063-729940445'pad=0,hg19_refFlat_ZFHX3:range=chr16:72821063-729940445'pad=0 3'pad=0 strand=- repeatMasking=none,-95.40;hg19_refFlat_ZFHX3:range=chr16:72821063-729848415'pad=0,hg19_refFlat_ZFHX3:range=chr16:72821063-729848415'pad=0 3'pad=0 strand=- repeatMasking=none,-95.40chr16:72811062-72831143"	NA	inner
CUST_35627_PI429285431	11.558887	P	11.506093	P	1.03727181569179	0	lncRNA	37042-1_{1..2244}	n342771|AK096756|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5274|NULL|2.7477100|-0.2155477	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342771|AK096756|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5274|NULL|2.7477100|-0.2155477	chr11	 68658746	 68660989	-	NA	NA	NA	NA	IGHMBP2	NA	chr11:68671319-68681303	inner
CUST_1254_PI429285431	1.022654	A	1.033037	A	0.992828888831291	0	lncRNA	1246-1_{1..347}	"transcript_id ""ENST00000438633.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438633.1"" | genecode_v17"	chr2	220992267	220992613	+	ENSG00000235337.1	ENST00000438633.1	AC114765.2	AC114765.2-001	NA	NA	NA	inter
CUST_416_PI429285431	0.92463875	A	0.9232023	A	1.0009961671127	0	lncRNA	408-1_{1..1057}	"transcript_id ""ENST00000411954.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411954.1"" | genecode_v17"	chr1	143687243	143688299	+	ENSG00000231734.3	ENST00000411954.1	RP6-206I17.2	RP6-206I17.2-004	NA	NA	NA	inter
CUST_19472_PI429285431	8.410665	P	8.57556	P	0.891993436744963	0	lncRNA	21129-1_{1..1704}	lnc-RNF40-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF40-1:1	chr16	 30789770	 30791473	+	lnc-RNF40-1	lnc-RNF40-1:1	ENSG00000262026.1	RP11-2C24.6	RNF40	NA	chr16:30779770-30787628	inner
CUST_9252_PI429285431	0.91784954	A	0.9154078	A	1.0016939182581	0	lncRNA	10761-1_{1..824}	lnc-MKKS-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MKKS-3:5	chr20	 10015805	 10016628	-	lnc-MKKS-3	lnc-MKKS-3:5	ENSG00000227906	RP5-839B4.7	ANKRD5	NA	chr20:10015697-10025972	inter
CUST_5269_PI429285431	1.462245	A	1.8039392	A	0.789114087226897	0	lncRNA	5209-1_{1..684}	"transcript_id ""ENST00000558153.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558153.1"" | genecode_v17"	chr15	 81944573	 81945256	+	ENSG00000259594.1	ENST00000558153.1	CTD-2034I4.2	CTD-2034I4.2-002	NA	NA	NA	inter
CUST_110_PI429285431	1.141357	A	1.4021426	A	0.834633307425754	0	lncRNA	102-1_{1..607}	"transcript_id ""ENST00000450983.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450983.1"" | genecode_v17"	chr1	   453633	   454239	-	ENSG00000236601.1	ENST00000450983.1	RP4-669L17.2	RP4-669L17.2-002	NA	NA	NA	inter
CUST_50679_PI429285431	7.352559	P	7.2692075	P	1.05947643538669	0	lncRNA	54353-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00004169 range=chr10:46744225-46762776 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004169 range=chr10:46744225-46762776 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 46744225	 46747224	-	NA	NA	NA	NA	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_14717_PI429285431	0.9926571	A	1.2666134	A	0.827048419800306	0	lncRNA	16381-1_{1..229}	lnc-MYEF2-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYEF2-3:3	chr15	 48296243	 48296471	-	lnc-MYEF2-3	lnc-MYEF2-3:3	XLOC_011471	linc-SLC30A4-3	NA	NA	NA	inter
CUST_14276_PI429285431	0.91892314	A	0.91795975	M	1.00066799407101	0	lncRNA	15934-1_{1..2097}	lnc-BHLHE23-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-BHLHE23-1:2	chr20	 61667400	 61669496	-	lnc-BHLHE23-1	lnc-BHLHE23-1:2	XLOC_013840	linc-BHLHE23-2	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60"	NA	inter
CUST_9599_PI429285431	2.8843002	A	2.9789884	A	0.93647461954166	0	lncRNA	11114-1_{1..937}	lnc-POLR2B-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLR2B-1:8	chr4	 58067299	 58068235	+	lnc-POLR2B-1	lnc-POLR2B-1:8	XLOC_003547	linc-LPHN3-8	NA	NA	NA	inter
CUST_29698_PI429285431	1.277122	A	0.95605385	A	1.24925513654919	0	lncRNA	31460-1_{1..956}	n333363|BC001876|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086102_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086102_04|-1.0928100|-0.2838496	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333363|BC001876|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086102_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086102_04|-1.0928100|-0.2838496	chr6	  3305106	  3306061	+	NA	NA	NA	NA	SLC22A23	NA	chr6:3295106-3316062	inner
CUST_41810_PI429285431	0.91333055	A	0.9059386	A	1.00513685794686	0	lncRNA	43402-1_{1..87}	ENST00000384867 ncrna:miRNA chromosome:GRCh37:19:54178965:54179051:1 gene:ENSG00000207599 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384867 ncrna:miRNA chromosome:GRCh37:19:54178965:54179051:1 gene:ENSG00000207599 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54178965	 54179051	+	ENSG00000207599	ENST00000384867	NA	NA	NA	NA	NA	inter
CUST_40943_PI429285431	0.9018287	A	0.90388674	A	0.998574492379121	0	lncRNA	41623-1_{1..3000}	n410903|NR_038365|lncRNA|Homosapiens||RefGeneNoncode|NR_038365||3.3603700|-0.1630596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410903|NR_038365|lncRNA|Homosapiens||RefGeneNoncode|NR_038365||3.3603700|-0.1630596	chr10	133604733	133607732	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48511_PI429285431	4.4491014	P	2.340784	A	4.31188111086791	0	lncRNA	52364-1_{1..756}	hg19_lincRNAsTranscripts_TCONS_l2_00014792 range=chr2:111965933-112252645 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014792 range=chr2:111965933-112252645 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	111965933	111966688	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1480_PI429285431	0.9095698	A	0.9045706	A	1.00347119206677	0	lncRNA	1467-1_{1..624}	"transcript_id ""ENST00000482351.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000482351.1"" | genecode_v17"	chr3	145657755	145658378	+	ENSG00000244358.1	ENST00000482351.1	RP11-88H10.2	RP11-88H10.2-002	NA	NA	NA	inter
CUST_48101_PI429285431	1.1696604	A	0.90862465	A	1.19833871581891	0	lncRNA	51975-1_{1..1289}	"gi|397138457|ref|XR_159496.1| PREDICTED: Homo sapiens uncharacterized LOC100996787 (LOC100996787), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138457|ref|XR_159496.1| PREDICTED: Homo sapiens uncharacterized LOC100996787 (LOC100996787), misc_RNA"	NA	NA	NA	NA	NA	XR_159496.1	NA	NA	NA	NA	NA	Unknown
CUST_7534_PI429285431	0.97905344	A	0.92551637	A	1.0378062072814	0	lncRNA	9171-1_{1..2401}	lnc-UCHL3-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-UCHL3-9:1	chr13	 74980591	 74982991	+	lnc-UCHL3-9	lnc-UCHL3-9:1	ENSG00000256370	AL353660.1	NA	NA	NA	inter
CUST_17078_PI429285431	0.9575848	A	1.0769334	A	0.92060322395165	0	lncRNA	18787-1_{1..2862}	lnc-MAF-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAF-2:1	chr16	 79804344	 79807205	-	lnc-MAF-2	lnc-MAF-2:1	XLOC_012017	linc-MAF-4	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00"	NA	inter
CUST_51153_PI429285431	5.483559	P	5.275572	P	1.15507537622256	0	lncRNA	54775-1_{1..542}	hg19_lincRNAsTranscripts_TCONS_l2_00007617 range=chr14:22191912-22192543 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007617 range=chr14:22191912-22192543 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 22191912	 22192453	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21812_PI429285431	0.92344695	A	0.92603964	A	0.998204498082067	0	lncRNA	23421-1_{1..477}	lnc-PDPN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDPN-1:1	chr1	 13842665	 13843141	+	lnc-PDPN-1	lnc-PDPN-1:1	ENSG00000259961.1	RP4-597A16.2	LRRC38	"hg19_refFlat_LRRC38:range=chr1:13802314-138400885'pad=0,hg19_refFlat_LRRC38:range=chr1:13802314-138400885'pad=0 3'pad=0 strand=- repeatMasking=none,-98.60chr1:13832665-13840242"	NA	inter
CUST_20084_PI429285431	0.9647029	A	1.3741747	A	0.752898974880107	0	lncRNA	21732-1_{1..537}	lnc-ZFYVE26-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZFYVE26-1:1	chr14	 68596783	 68597319	-	lnc-ZFYVE26-1	lnc-ZFYVE26-1:1	ENSG00000258837.1	CTD-2566J3.1	RAD51B	NA	chr14:68586783-68606913	inner
CUST_50884_PI429285431	8.013182	P	7.749957	P	1.20015854224299	0	lncRNA	54527-1_{1..619}	hg19_lincRNAsTranscripts_TCONS_l2_00006101 range=chr12:8387806-8395523 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006101 range=chr12:8387806-8395523 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  8387806	  8388424	-	NA	NA	NA	NA	FAM90A1	NA	chr12:8377806-8380214	inter
CUST_46161_PI429285431	0.9055229	A	0.90553766	A	0.99998976919995	0	lncRNA	50410-1_{1..2129}	"gi|378786690|ref|NR_046392.1| Homo sapiens long intergenic non-protein coding RNA 507 (LINC00507), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|378786690|ref|NR_046392.1| Homo sapiens long intergenic non-protein coding RNA 507 (LINC00507), non-coding RNA"	Chr12	128399955	128402083	+	100862680	NR_046392.1	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00"	NA	inter
CUST_23565_PI429285431	2.5010147	A	1.4949684	A	2.00839954043666	0	lncRNA	25132-1_{1..634}	lnc-RP11-778D12.2.1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-778D12.2.1-4:4	chr8	107072609	107073242	-	lnc-RP11-778D12.2.1-4	lnc-RP11-778D12.2.1-4:4	ENSG00000251003.2	RP11-152P17.2	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
LNCA_21_P0014466	1.4021426	A	3.3711333	P	0.25543166725445	0	lncRNA	XR_109952	XR_109952	XR_109952	NA	NA	LOC100507307	uncharacterized LOC100507307	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507307 (LOC100507307), miscRNA [XR_109952]"	chr2:87777086-87777027	hs|2p11.2	Agilent_HUMAN_G3V2	XR_109952	XR_109952	chr2	 87777027	 87777086	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48977_PI429285431	2.6902864	A	3.1355577	P	0.734446190436423	0	lncRNA	52816-1_{1..779}	hg19_lincRNAsTranscripts_TCONS_l2_00019085 range=chr3:195273320-195277467 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019085 range=chr3:195273320-195277467 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	195273320	195274098	+	NA	NA	NA	NA	APOD	NA	chr3:195281388-195287467	inter
CUST_43912_PI429285431	0.92234427	A	0.92195666	A	1.00026870687388	0	lncRNA	48625-1_{1..2478}	"gi|310118979|ref|XR_109926.1| PREDICTED: Homo sapiens uncharacterized LOC100506286 (LOC100506286), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310118979|ref|XR_109926.1| PREDICTED: Homo sapiens uncharacterized LOC100506286 (LOC100506286), misc_RNA"	Chr2	101768122	101770599	+	100506286	XR_109926.1	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90"	NA	inter
CUST_33206_PI429285431	0.9623108	A	0.9206205	A	1.02931909817099	0	lncRNA	34797-1_{1..1460}	n339902|BC037904|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2351|NULL|-1.1905700|-0.3073230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339902|BC037904|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2351|NULL|-1.1905700|-0.3073230	chr4	 36245737	 36247196	+	NA	NA	NA	NA	DTHD1	NA	chr4:36283244-36285842	inner
CUST_21646_PI429285431	3.3104336	P	3.8091877	P	0.707717696749972	0	lncRNA	23258-1_{1..736}	lnc-SRPK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SRPK2-1:1	chr7	104654588	104655323	-	lnc-SRPK2-1	lnc-SRPK2-1:1	ENSG00000239569.1	RP11-325F22.4	MLL5	NA	chr7:104654637-104664768	inner
CUST_25276_PI429285431	6.2876477	P	6.5316496	P	0.844399775365735	0	lncRNA	26806-1_{1..492}	lnc-ACP2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACP2-2:2	chr11	 47293513	 47294004	-	lnc-ACP2-2	lnc-ACP2-2:2	ENSG00000256746.1	RP11-17G12.3	MADD	NA	chr11:47290927-47303626	inner
CUST_22226_PI429285431	2.9666893	A	2.5796099	A	1.30774331936867	0	lncRNA	23826-1_{1..916}	lnc-MTIF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTIF2-1:1	chr2	 55443111	 55444026	-	lnc-MTIF2-1	lnc-MTIF2-1:1	ENSG00000203327.2	AC012358.7	C2orf63	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40chr2:55433111-55453262"	NA	inner
CUST_16815_PI429285431	1.5514195	A	1.2445357	A	1.23703283946971	0	lncRNA	18522-1_{1..480}	lnc-ANKRD31-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ANKRD31-1:1	chr5	 74348254	 74348733	-	lnc-ANKRD31-1	lnc-ANKRD31-1:1	XLOC_004890	linc-GCNT4	NA	NA	NA	inter
CUST_16624_PI429285431	3.3508582	P	3.98729	P	0.643302053916396	0	lncRNA	18325-1_{1..327}	lnc-TSHZ3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSHZ3-1:1	chr19	 31620417	 31620743	-	lnc-TSHZ3-1	lnc-TSHZ3-1:1	XLOC_013293	linc-C19orf12-1	NA	NA	NA	inter
CUST_39664_PI429285431	0.91769534	A	0.91606313	A	1.00113200199072	0	lncRNA	40604-1_{1..1814}	n405293|NR_001434_2|lncRNA|Homosapiens||RefGeneNoncode|NR_001434_2||-1.0512700|-0.3103654	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405293|NR_001434_2|lncRNA|Homosapiens||RefGeneNoncode|NR_001434_2||-1.0512700|-0.3103654	chr6	  1149677	  1151490	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4446_PI429285431	1.6391212	A	2.2959418	A	0.634274567184873	0	lncRNA	4396-1_{1..1282}	"transcript_id ""ENST00000543334.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000543334.1"" | genecode_v17"	chr12	122237290	122238571	-	ENSG00000212694.4	ENST00000543334.1	AC084018.1	AC084018.1-010	SETD1B	NA	chr12:122242638-122250510	inter
CUST_33749_PI429285431	6.117089	P	6.3761044	P	0.835658038670438	0	lncRNA	35305-1_{1..445}	n340527|AF147384|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2989|NULL|-0.9917750|-0.3102405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340527|AF147384|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2989|NULL|-0.9917750|-0.3102405	chr5	 79442899	 79443343	+	NA	NA	NA	NA	SERINC5	"hg19_refFlat_SERINC5:range=chr5:79439486-795517415'pad=0,hg19_refFlat_SERINC5:range=chr5:79439486-795517415'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SERINC5:range=chr5:79409424-795517415'pad=0,hg19_refFlat_SERINC5:range=chr5:79409424-795517415'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50chr5:79432899-79453344"	NA	inner
CUST_35243_PI429285431	5.9678917	P	6.42084	P	0.730548368522675	0	lncRNA	36644-1_{1..2239}	n342242|AK123432|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4732|NULL|-0.3214150|-0.3462964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342242|AK123432|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4732|NULL|-0.3214150|-0.3462964	chrX	101973352	101975590	-	NA	NA	NA	NA	BHLHB9	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10chrX:101975642-101985591"	NA	inter
CUST_4566_PI429285431	4.512395	P	4.6736684	P	0.894235422353725	0	lncRNA	4515-1_{1..580}	"transcript_id ""ENST00000431171.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431171.1"" | genecode_v17"	chr13	 27947485	 27948064	+	ENSG00000229609.1	ENST00000431171.1	RP11-125I23.3	RP11-125I23.3-001	NA	NA	NA	inter
CUST_3393_PI429285431	4.6611247	P	2.463979	A	4.58571183764857	0	lncRNA	3366-1_{1..958}	"transcript_id ""ENST00000588403.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588403.1"" | genecode_v17"	chr9	 37080010	 37080967	+	ENSG00000233137.2	ENST00000588403.1	RP11-220I1.1	RP11-220I1.1-003	NA	NA	NA	inter
CUST_33123_PI429285431	8.678632	P	9.194924	P	0.699166516459975	0	lncRNA	34720-2_{3001..3161}	n339810|BC028154|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2257|NULL|10.2030000|-0.1695580	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339810|BC028154|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2257|NULL|10.2030000|-0.1695580	chr4	  3297761	  3297921	+	NA	NA	NA	NA	RGS12	NA	chr4:3315874-3434259	inner
CUST_35946_PI429285431	7.575808	P	7.5843625	P	0.994088017397529	0	lncRNA	37307-1_{1..707}	n344582|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_130|NULL|-1.2839800|-0.3308365	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344582|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_130|NULL|-1.2839800|-0.3308365	chr5	  8460225	  8460931	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012642	0.96882075	A	0.91982794	A	1.03454242562777	0	lncRNA	TCONS_l2_00020934	NA	NA	NA	NA	XLOC_l2_010976	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010976), lincRNA [TCONS_l2_00020934]"	chr4:185977196-185977255	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_l2_00020934	TCONS_l2_00020934	chr4	185977196	185977255	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_275_PI429285431	0.9983192	A	0.9260168	A	1.05139326612472	0	lncRNA	267-1_{1..458}	"transcript_id ""ENST00000448001.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448001.1"" | genecode_v17"	chr1	 69898938	 69899395	+	ENSG00000229639.1	ENST00000448001.1	RP3-380B4.1	RP3-380B4.1-001	NA	NA	NA	inter
LNCA_21_P0006277	4.640905	P	4.829654	P	0.877366179572401	0	lncRNA	TCONS_00016355	NA	NA	NA	NA	XLOC_007735	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007735), lincRNA [TCONS_00016355]"	chr9:75797293-75797234	hs|9q21.13	Agilent_HUMAN_G3V2	TCONS_00016355	TCONS_00016355	chr9	 75797234	 75797293	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51226_PI429285431	6.8977413	P	6.9227896	P	0.982787695236551	0	lncRNA	54844-1_{1..1241}	hg19_lincRNAsTranscripts_TCONS_l2_00008410 range=chr15:22546271-22572817 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008410 range=chr15:22546271-22572817 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 22546271	 22547511	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44683_PI429285431	6.2720356	P	5.044188	P	2.34217293245511	0	lncRNA	49243-2_{3001..5688}	"gi|223468618|ref|NR_026790.1| Homo sapiens HLA complex group 11 (non-protein coding) (HCG11), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223468618|ref|NR_026790.1| Homo sapiens HLA complex group 11 (non-protein coding) (HCG11), non-coding RNA"	Chr6	 26524934	 26527621	+	493812	NR_026790.1	NA	NA	NA	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70"	NA	inter
CUST_41225_PI429285431	0.9099925	A	0.91158813	A	0.998894604963976	0	lncRNA	42125-1_{1..75}	ENST00000362265 ncrna:miRNA chromosome:GRCh37:1:65524117:65524191:-1 gene:ENSG00000199135 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362265 ncrna:miRNA chromosome:GRCh37:1:65524117:65524191:-1 gene:ENSG00000199135 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 65524117	 65524191	-	ENSG00000199135	ENST00000362265	NA	NA	NA	NA	NA	inter
LNCA_21_P0001031	2.0786977	A	2.5672238	A	0.712752895441859	0	lncRNA	ENST00000456125	NA	NA	NA	NA	XLOC_000471	NA	ENST00000456125	NA	NA	"BROAD Institute lincRNA (XLOC_000471), lincRNA [TCONS_00000339]"	chr1:176176953-176187674	hs|1q25.2	Agilent_HUMAN_G3V2	ENST00000456125	ENST00000456125	chr1	176176953	176187674	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6673_PI429285431	0.91510224	A	1.1313877	A	0.860778852796364	0	lncRNA	6620-1_{1..3000}	"transcript_id ""ENST00000454676.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000454676.1"" | genecode_v17"	chr20	 25121425	 25124424	-	ENSG00000230725.1	ENST00000454676.1	RP4-738P15.1	RP4-738P15.1-003	NA	NA	NA	inter
CUST_40891_PI429285431	7.102806	P	5.2680287	P	3.56716339400684	0	lncRNA	41580-2_{3001..3830}	n410702|NR_037962|lncRNA|Homosapiens||RefGeneNoncode|NR_037962||2.0514000|-0.3344415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410702|NR_037962|lncRNA|Homosapiens||RefGeneNoncode|NR_037962||2.0514000|-0.3344415	chr1	228783393	228784222	+	NA	NA	NA	NA	RHOU	NA	chr1:228780394-228882416	inter
CUST_21156_PI429285431	0.9118486	A	0.90770745	A	1.00287455006534	0	lncRNA	22779-1_{1..512}	lnc-NNT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NNT-1:1	chr5	 43525199	 43525710	+	lnc-NNT-1	lnc-NNT-1:1	ENSG00000248240.1	RP11-159F24.5	PAIP1	NA	chr5:43515199-43535412	inter
CUST_4384_PI429285431	2.2719743	A	2.7507224	A	0.71760005204331	0	lncRNA	4335-1_{1..2773}	"transcript_id ""ENST00000604017.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604017.1"" | genecode_v17"	chr12	 94338817	 94341589	+	ENSG00000271382.1	ENST00000604017.1	RP11-1060G2.2	RP11-1060G2.2-001	NA	"hg19_refFlat_FAM47E:range=chr4:77138761-772046115'pad=0,hg19_refFlat_FAM47E:range=chr4:77138761-772046115'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10"	NA	inter
CUST_48764_PI429285431	0.9239508	A	0.9087834	A	1.01056869883822	0	lncRNA	52601-1_{1..849}	hg19_lincRNAsTranscripts_TCONS_l2_00014981 range=chr2:171581779-171583822 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014981 range=chr2:171581779-171583822 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	171581779	171582627	-	NA	NA	NA	NA	SP5	NA	chr2:171571857-171574498	inter
CUST_16149_PI429285431	6.5868025	P	6.7046685	P	0.921549777354124	0	lncRNA	17854-1_{1..490}	lnc-NUAK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUAK2-1:1	chr1	205264161	205264650	-	lnc-NUAK2-1	lnc-NUAK2-1:1	XLOC_001166	linc-DSTYK	NUAK2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30chr1:205271191-205274218"	NA	inter
CUST_3435_PI429285431	0.91035634	A	0.9019393	A	1.00585129991332	0	lncRNA	3406-1_{1..624}	"transcript_id ""ENST00000422909.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422909.1"" | genecode_v17"	chr9	 76188531	 76189154	+	ENSG00000232590.1	ENST00000422909.1	RP11-128I7.1	RP11-128I7.1-001	NA	NA	NA	inter
CUST_17411_PI429285431	0.9238273	A	0.90983385	A	1.00974671322106	0	lncRNA	19135-1_{1..468}	lnc-BOD1L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BOD1L-2:1	chr4	 13842385	 13842852	-	lnc-BOD1L-2	lnc-BOD1L-2:1	XLOC_003889	linc-BOD1L-3	NA	NA	NA	inter
CUST_50213_PI429285431	1.074779	A	1.2128571	A	0.908728921263263	0	lncRNA	53939-1_{1..2236}	hg19_lincRNAsTranscripts_TCONS_l2_00029310 range=chr9:66515875-66522883 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029310 range=chr9:66515875-66522883 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 66515875	 66518110	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15058_PI429285431	0.9171966	A	0.92069125	A	0.997580624623151	0	lncRNA	16721-1_{1..354}	lnc-TBX3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBX3-2:1	chr12	115526978	115527331	-	lnc-TBX3-2	lnc-TBX3-2:1	XLOC_010206	linc-TBX3-3	NA	NA	NA	inter
CUST_14335_PI429285431	2.2413208	A	2.1218538	A	1.08633344526113	0	lncRNA	15991-1_{1..553}	lnc-LACC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LACC1-1:1	chr13	 44614320	 44614872	+	lnc-LACC1-1	lnc-LACC1-1:1	XLOC_010368	linc-SERP2-4	NA	NA	NA	inter
CUST_13100_PI429285431	0.9263545	A	1.1719265	A	0.843481306198835	0	lncRNA	14724-1_{1..364}	lnc-ALKBH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALKBH1-1:1	chr14	 78123810	 78124173	-	lnc-ALKBH1-1	lnc-ALKBH1-1:1	XLOC_011082	linc-SPTLC2	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-22.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.10"	NA	inter
CUST_23100_PI429285431	3.4916973	P	2.898015	P	1.50909361010833	0	lncRNA	24671-1_{1..581}	lnc-NAT8L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NAT8L-1:1	chr4	  2142554	  2143134	+	lnc-NAT8L-1	lnc-NAT8L-1:1	ENSG00000250623.1	RP11-317B7.3	POLN	NA	chr4:2132554-2152785	inner
CUST_25899_PI429285431	6.045028	P	6.7708836	P	0.604638353414736	0	lncRNA	27418-1_{1..2086}	lnc-CLSTN3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CLSTN3-1:3	chr12	  7273102	  7275187	+	lnc-CLSTN3-1	lnc-CLSTN3-1:3	ENSG00000205885.3	ABC12-49244600F4.3	CLSTN3	"hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-56.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90chr12:7282967-7283623"	NA	inter
CUST_20334_PI429285431	4.8635283	P	4.6572657	P	1.15369558213796	0	lncRNA	21977-1_{1..3000}	lnc-NAPG-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NAPG-2:1	chr18	 10663821	 10666820	+	lnc-NAPG-2	lnc-NAPG-2:1	ENSG00000260779.1	RP11-856M7.1	FAM38B	NA	chr18:10670244-10676884	inter
CUST_28138_PI429285431	4.371125	P	4.8081617	P	0.738650241396988	0	lncRNA	29764-1_{1..1096}	n325415|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323739|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323739|-1.0112800|-0.2983942	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325415|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323739|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323739|-1.0112800|-0.2983942	chr2	 16107999	 16109094	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50"	NA	inter
CUST_35085_PI429285431	5.816041	P	5.8806634	P	0.956195552178266	0	lncRNA	36494-1_{1..3000}	n342048|D86973|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4529|NULL|34.1658000|-0.1596028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342048|D86973|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4529|NULL|34.1658000|-0.1596028	chr12	120565073	120568072	-	NA	NA	NA	NA	GCN1L1	NA	chr12:120565014-120632513	inner
CUST_35535_PI429285431	0.9105201	A	0.91450465	A	0.997241930882321	0	lncRNA	36952-2_{3001..3613}	n342658|BC050295|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5160|NULL|-1.1675100|-0.3562597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342658|BC050295|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5160|NULL|-1.1675100|-0.3562597	chr5	 65267658	 65268270	+	NA	NA	NA	NA	ERBB2IP	NA	chr5:65254658-65278220	inner
CUST_23417_PI429285431	0.9232989	A	0.9212328	A	1.00143313735098	0	lncRNA	24985-1_{1..620}	lnc-RP11-90J19.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-90J19.1.1-1:2	chr15	 47688548	 47689167	-	lnc-RP11-90J19.1.1-1	lnc-RP11-90J19.1.1-1:2	ENSG00000259221.1	CTD-2050N2.1	SEMA6D	"hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0,hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10chr15:47678548-47698802"	NA	inner
CUST_49844_PI429285431	4.0723386	P	3.9765234	P	1.06866909277309	0	lncRNA	53602-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026657 range=chr7:65982683-66057999 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026657 range=chr7:65982683-66057999 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 65982683	 65985682	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-59.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_GTF2IRD1:range=chr7:73922411-740167605'pad=0,hg19_refFlat_GTF2IRD1:range=chr7:73922411-740167605'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.01;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.90;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_50743_PI429285431	7.405241	P	7.853053	P	0.733153910880437	0	lncRNA	54411-1_{1..1002}	hg19_lincRNAsTranscripts_TCONS_l2_00003832 range=chr10:131862185-131878143 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003832 range=chr10:131862185-131878143 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	131862185	131863186	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70"	NA	inter
CUST_6671_PI429285431	1.5209658	A	1.4921844	A	1.02015007238469	0	lncRNA	6618-1_{1..823}	"transcript_id ""ENST00000458461.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458461.1"" | genecode_v17"	chr20	 24472108	 24472930	-	ENSG00000228539.1	ENST00000458461.1	RP11-526K17.2	RP11-526K17.2-001	SYNDIG1	NA	chr20:24462108-24492981	inner
CUST_30342_PI429285431	5.4929247	P	4.9556923	P	1.45118595678627	0	lncRNA	32118-1_{1..261}	n335268|AY665469|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255975|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255975|-1.4253900|-0.3132635	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335268|AY665469|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255975|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255975|-1.4253900|-0.3132635	chr12	 26112053	 26112313	+	NA	NA	NA	NA	RASSF8	NA	chr12:26126688-26218309	inner
CUST_38276_PI429285431	6.773761	P	6.553905	P	1.16461733649077	0	lncRNA	39331-1_{1..1721}	n381878|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001sos.2||4.0914200|-0.2375653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381878|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001sos.2||4.0914200|-0.2375653	chr12	 57978688	 57980408	+	NA	NA	NA	NA	KIF5A	NA	chr12:57968688-57978554	inter
CUST_10778_PI429285431	1.0537186	A	0.92393476	A	1.09412975475785	0	lncRNA	12313-1_{1..526}	lnc-DDX1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DDX1-2:2	chr2	 15855537	 15856062	+	lnc-DDX1-2	lnc-DDX1-2:2	XLOC_001362	linc-MYCN-3	NA	NA	NA	inter
CUST_19573_PI429285431	1.7772291	A	2.294666	A	0.698611889055315	0	lncRNA	21229-1_{1..849}	lnc-FAM54B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM54B-1:1	chr1	 26189326	 26190174	+	lnc-FAM54B-1	lnc-FAM54B-1:1	ENSG00000236528.1	RP1-125I3.2	C1orf135	"hg19_refFlat_PAQR7:range=chr1:26189290-261903305'pad=0,hg19_refFlat_PAQR7:range=chr1:26189290-261903305'pad=0 3'pad=0 strand=- repeatMasking=none,-101.00chr1:26179326-26185848"	NA	inner
CUST_1377_PI429285431	0.92325133	A	0.91121006	A	1.00838130042318	0	lncRNA	1365-1_{1..492}	"transcript_id ""ENST00000481148.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000481148.1"" | genecode_v17"	chr3	 72109992	 72110483	-	ENSG00000241163.2	ENST00000481148.1	RP11-398A8.3	RP11-398A8.3-008	NA	NA	NA	inter
CUST_21253_PI429285431	4.555715	P	4.1600394	P	1.31555867926269	0	lncRNA	22879-1_{1..3000}	lnc-TBC1D29-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBC1D29-1:6	chr17	 28961012	 28964011	+	lnc-TBC1D29-1	lnc-TBC1D29-1:6	ENSG00000214719.5	LRRC37BP1	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10"	NA	inter
LNCA_21_P0006967	0.92483217	A	0.9169149	A	1.00550291911921	0	lncRNA	TCONS_00018434	NA	NA	NA	NA	XLOC_008730	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008730), lincRNA [TCONS_00018434]"	chr10:10826035-10825976	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018434	TCONS_00018434	chr10	 10825976	 10826035	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11519_PI429285431	1.6132302	A	1.84465	A	0.851796200637434	0	lncRNA	13089-1_{1..392}	lnc-KLHDC10-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHDC10-1:3	chr7	129782099	129782490	+	lnc-KLHDC10-1	lnc-KLHDC10-1:3	XLOC_006245	linc-C7orf45-2	KLHDC10	NA	chr7:129772099-129775560	inter
CUST_34196_PI429285431	4.109035	P	4.146552	P	0.97433041010966	0	lncRNA	35711-1_{1..1580}	n341051|BC035477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3517|NULL|-0.8699840|-0.1293359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341051|BC035477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3517|NULL|-0.8699840|-0.1293359	chr11	 66061968	 66063547	-	NA	NA	NA	NA	TMEM151A	"hg19_refFlat_TMEM151A:range=chr11:66059485-660631245'pad=0,hg19_refFlat_TMEM151A:range=chr11:66059485-660631245'pad=0 3'pad=0 strand=+ repeatMasking=none,-111.90chr11:66059373-66064135"	NA	inner
CUST_36265_PI429285431	2.6123426	A	1.6882156	A	1.8975356624087	0	lncRNA	37503-1_{1..741}	n344796|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_345|NULL|-1.3525500|-0.2240652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344796|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_345|NULL|-1.3525500|-0.2240652	chr21	 15399759	 15400499	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30582_PI429285431	13.53742	P	13.691409	P	0.898761979302556	0	lncRNA	32364-1_{1..221}	n335846|X58237|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322206|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322206|1.8795200|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335846|X58237|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322206|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322206|1.8795200|-1.0000000	chr19	 54972487	 54972707	+	NA	NA	NA	NA	LENG8	NA	chr19:54962487-54973196	inner
CUST_14063_PI429285431	4.0062065	P	4.3360205	P	0.795639055206767	0	lncRNA	15709-1_{1..480}	lnc-GPR39-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR39-2:4	chr2	133095945	133096424	+	lnc-GPR39-2	lnc-GPR39-2:4	XLOC_001680	linc-GPR39-1	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_25847_PI429285431	7.286718	P	7.6877723	P	0.75730465405137	0	lncRNA	27367-1_{1..469}	lnc-SMNDC1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMNDC1-3:1	chr10	112258150	112258618	-	lnc-SMNDC1-3	lnc-SMNDC1-3:1	ENSG00000225461.1	RP11-525A16.4	DUSP5	"hg19_refFlat_DUSP5:range=chr10:112257880-1122701845'pad=0,hg19_refFlat_DUSP5:range=chr10:112257880-1122701845'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.70chr10:112257625-112268300"	NA	inner
CUST_36366_PI429285431	0.91540706	A	0.9253891	A	0.993104858446357	0	lncRNA	37587-1_{1..3000}	n344884|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_433|NULL|-1.4653300|-0.2431829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344884|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_433|NULL|-1.4653300|-0.2431829	chr6	  3658051	  3661050	-	NA	NA	NA	NA	C6orf145	NA	chr6:3722836-3729882	inter
CUST_39228_PI429285431	7.5975046	P	7.5652995	P	1.02257389396971	0	lncRNA	40201-1_{1..731}	n386051|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010adm.1||0.4591180|-0.2062424	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386051|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010adm.1||0.4591180|-0.2062424	chr13	 50656413	 50657143	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3447_PI429285431	4.4955745	P	4.834451	P	0.79065679683596	0	lncRNA	3418-1_{1..623}	"transcript_id ""ENST00000586214.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586214.1"" | genecode_v17"	chr9	 84888374	 84888996	+	ENSG00000228430.4	ENST00000586214.1	RP11-15B24.5	RP11-15B24.5-009	NA	NA	NA	inter
CUST_3952_PI429285431	1.5798742	A	2.2082727	A	0.646894118016749	0	lncRNA	3922-1_{1..880}	"transcript_id ""ENST00000531708.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531708.1"" | genecode_v17"	chr11	 58902763	 58903642	-	ENSG00000245571.2	ENST00000531708.1	AP001258.4	AP001258.4-004	FAM111B	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90chr11:58892763-58894888"	NA	inner
LNCA_21_P0013118	1.4111441	A	0.92621696	A	1.3995151845099	0	lncRNA	XR_110199	XR_110199	XR_110199	NA	Hs.487182	LOC401286	uncharacterized LOC401286	NA	THC2482426	NA	"PREDICTED: Homo sapiens hypothetical LOC401286 (LOC401286), miscRNA [XR_110199]"	chr6:168071545-168071486	hs|6q27	Agilent_HUMAN_G3V2	XR_110199	XR_110199	chr6	168071486	168071545	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25147_PI429285431	2.1896112	A	1.8107493	A	1.30031566966052	0	lncRNA	26685-1_{1..2696}	lnc-SNURF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SNURF-1:1	chr15	 25265737	 25268432	+	lnc-SNURF-1	lnc-SNURF-1:1	ENSG00000224078.4	SNHG14	SNRPN	NA	chr15:25255737-25276501	inter
CUST_557_PI429285431	0.9234105	A	0.9592637	A	0.975454712902757	0	lncRNA	549-1_{1..116}	"transcript_id ""ENST00000450040.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450040.1"" | genecode_v17"	chr1	211355498	211355613	-	ENSG00000223562.1	ENST00000450040.1	RP11-543B16.3	RP11-543B16.3-001	NA	NA	NA	inter
CUST_39204_PI429285431	1.5989356	A	1.787254	A	0.87762808541649	0	lncRNA	40179-1_{1..1213}	n385989|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xny.1||2.8181400|-0.1831577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385989|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xny.1||2.8181400|-0.1831577	chr10	 49278238	 49279450	-	NA	NA	NA	NA	FRMPD2	NA	chr10:49268238-49348996	inter
CUST_2605_PI429285431	0.9317346	A	3.1107683	P	0.220823604578295	0	lncRNA	2592-1_{1..594}	"transcript_id ""ENST00000605586.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605586.1"" | genecode_v17"	chr6	112555366	112555959	-	ENSG00000271208.1	ENST00000605586.1	RP1-142L7.8	RP1-142L7.8-001	LAMA4	NA	chr6:112545366-112565959	inner
CUST_18296_PI429285431	0.91396976	A	0.9044072	A	1.00665027704292	0	lncRNA	20026-1_{1..2273}	lnc-FGGY-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-FGGY-5:2	chr1	 59365391	 59367663	+	lnc-FGGY-5	lnc-FGGY-5:2	ENSG00000234807	RP4-794H19.2	NA	NA	NA	inter
CUST_1270_PI429285431	1.2989895	A	0.9175681	A	1.30262462052556	0	lncRNA	1262-1_{1..880}	"transcript_id ""ENST00000413385.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413385.1"" | genecode_v17"	chr2	237661417	237662296	+	ENSG00000232328.1	ENST00000413385.1	AC011286.1	AC011286.1-002	NA	NA	NA	inter
CUST_28673_PI429285431	2.5308342	A	2.7624538	A	0.851678242862707	0	lncRNA	30365-1_{1..1351}	n326052|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047014|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047014|-1.0219500|-0.2973108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326052|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047014|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047014|-1.0219500|-0.2973108	chr10	 17296243	 17297593	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51327_PI429285431	3.151648	P	2.3034325	A	1.80027275203705	0	lncRNA	54930-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008623 range=chr15:47083523-47099833 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008623 range=chr15:47083523-47099833 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 47083523	 47086522	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13581_PI429285431	0.9637052	A	0.92715764	A	1.02565644133232	0	lncRNA	15222-1_{1..1169}	lnc-RPS29-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPS29-1:1	chr14	 50009797	 50010965	-	lnc-RPS29-1	lnc-RPS29-1:1	XLOC_011015	linc-MDGA2-2	NA	NA	NA	inter
CUST_29330_PI429285431	6.4105473	P	6.668565	P	0.836236140316531	0	lncRNA	31081-1_{1..215}	n332547|BC141903|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000435231|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000435231|-0.8920970|-0.1269180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332547|BC141903|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000435231|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000435231|-0.8920970|-0.1269180	chr20	 61405792	 61406006	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8381_PI429285431	4.084065	P	4.145839	P	0.958085291738614	0	lncRNA	9959-1_{1..673}	lnc-TMPRSS15-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMPRSS15-3:2	chr21	 20132092	 20132764	-	lnc-TMPRSS15-3	lnc-TMPRSS15-3:2	ENSG00000224141	AL109763.2	NA	NA	NA	inter
CUST_47977_PI429285431	1.2188505	A	0.9304997	A	1.22124342927421	0	lncRNA	51867-1_{1..1043}	"gi|410172817|ref|XR_172004.1| PREDICTED: Homo sapiens SLC25A30 antisense RNA 1 (SLC25A30-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|410172817|ref|XR_172004.1| PREDICTED: Homo sapiens SLC25A30 antisense RNA 1 (SLC25A30-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_172004.1	NA	NA	NA	NA	NA	Unknown
CUST_30436_PI429285431	6.4291635	P	7.1089063	P	0.6242765589668	0	lncRNA	32216-1_{1..616}	n335572|CR542066|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000268935|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000268935|2.5973200|-0.0156451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335572|CR542066|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000268935|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000268935|2.5973200|-0.0156451	chr9	139889136	139889751	-	NA	NA	NA	NA	CLIC3	NA	chr9:139889060-139891024	inner
CUST_9877_PI429285431	1.3896973	A	1.3977643	A	0.994423985694642	0	lncRNA	11400-1_{1..2861}	lnc-C13orf44-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C13orf44-1:4	chr13	 44681814	 44684674	-	lnc-C13orf44-1	lnc-C13orf44-1:4	XLOC_010585	linc-CCDC122-3	NA	NA	NA	inter
CUST_35219_PI429285431	0.9131347	A	1.1756837	A	0.833613761911131	0	lncRNA	36619-1_{1..2729}	n342207|AF164963|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4697|NULL|-1.1357200|-0.3629306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n342207|AF164963|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4697|NULL|-1.1357200|-0.3629306	chrX	 26576453	 26579181	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21874_PI429285431	0.9237049	A	0.93715084	A	0.990723281329424	0	lncRNA	23484-1_{1..578}	lnc-C12orf39-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C12orf39-1:1	chr12	 21912848	 21913425	+	lnc-C12orf39-1	lnc-C12orf39-1:1	ENSG00000256615.1	RP11-59N23.3	KCNJ8	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60chr12:21917889-21922966"	NA	inter
CUST_51835_PI429285431	1.2821987	A	1.4465342	A	0.892339433022702	0	lncRNA	55390-1_{1..436}	hg19_lincRNAsTranscripts_TCONS_l2_00012515 range=chr19:37742795-37747690 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012515 range=chr19:37742795-37747690 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 37742795	 37743230	+	NA	NA	NA	NA	ZNF383	NA	chr19:37732795-37734574	inter
CUST_12775_PI429285431	9.822874	P	11.030438	P	0.432999120592597	0	lncRNA	14398-1_{1..2195}	lnc-FAM46A-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM46A-2:3	chr6	 82605130	 82607324	-	lnc-FAM46A-2	lnc-FAM46A-2:3	XLOC_005774	linc-FAM46A-2	NA	NA	NA	inter
CUST_38579_PI429285431	0.9659847	A	1.120093	A	0.898687661537557	0	lncRNA	39590-1_{1..2616}	n383567|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002qwb.2||-0.8238490|-0.2909310	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383567|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002qwb.2||-0.8238490|-0.2909310	chr2	   239562	   242177	-	NA	NA	NA	NA	SH3YL1	NA	chr2:229562-252178	inner
CUST_31412_PI429285431	0.9549047	A	0.9419967	A	1.00898728913718	0	lncRNA	33184-1_{1..1181}	n337876|D16476|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|259|NULL|-1.2205500|-0.3728664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337876|D16476|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|259|NULL|-1.2205500|-0.3728664	chrX	144878892	144880072	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24609_PI429285431	5.1527815	P	5.4184284	P	0.831825663017803	0	lncRNA	26158-1_{1..622}	lnc-DHRS7B-5:19	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHRS7B-5:19	chr17	 20859947	 20860568	+	lnc-DHRS7B-5	lnc-DHRS7B-5:19	ENSG00000233098.3	RP11-344E13.3	NA	NA	NA	inter
LNCA_21_P0008675	1.0304004	A	1.0190861	A	1.00787330790222	0	lncRNA	TCONS_00023515	NA	NA	NA	NA	XLOC_011359	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011359), lincRNA [TCONS_00023515]"	chr15:93650723-93656558	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00023515	TCONS_00023515	chr15	 93650723	 93656558	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26_PI429285431	1.0270001	A	0.99501204	A	1.02242006884511	0	lncRNA	25-1_{1..2491}	"transcript_id ""ENST00000528139.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000528139.1"" | genecode_v17"	chr8	 48102395	 48104885	+	ENSG00000255366.1	ENST00000528139.1	RP11-1134I14.8	RP11-1134I14.8-001	NA	NA	NA	inter
CUST_45848_PI429285431	0.996925	A	0.93348014	A	1.04495792957872	0	lncRNA	50179-2_{3001..3597}	"gi|262263332|ref|NR_030691.1| Homo sapiens anoctamin 1, calcium activated chloride channel (ANO1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|262263332|ref|NR_030691.1| Homo sapiens anoctamin 1, calcium activated chloride channel (ANO1), transcript variant 2, non-coding RNA"	Chr11	 69934516	 69935112	+	55107	NR_030691.1	NA	NA	NA	NA	NA	inter
CUST_32510_PI429285431	3.9272637	P	1.4477304	A	5.57717020478522	0	lncRNA	34177-1_{1..1666}	n339114|AF052115|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1544|NULL|-0.8065680|-0.3517458	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339114|AF052115|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1544|NULL|-0.8065680|-0.3517458	chr2	207484177	207485842	+	NA	NA	NA	NA	ADAM23	NA	chr2:207474177-207482685	inter
CUST_49641_PI429285431	2.9952955	A	2.7394567	A	1.19402976431633	0	lncRNA	53424-1_{1..926}	hg19_lincRNAsTranscripts_TCONS_l2_00025731 range=chr7:26451825-26535974 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025731 range=chr7:26451825-26535974 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 26451825	 26452750	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00806637	9.080814	P	9.109942	P	0.980012461996561	0	lncRNA	TCONS_00004564	NA	NA	NA	NA	XLOC_002473	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002473), lincRNA [TCONS_00004564]"	chr2:208102984-208102925	hs|2q33.3	Agilent_HUMAN_G3V2	TCONS_00004564	TCONS_00004564	chr2	208102925	208102984	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007016	2.4691374	A	1.7473838	A	1.64918540637356	0	lncRNA	TCONS_00018599	NA	NA	NA	NA	XLOC_008942	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008942), lincRNA [TCONS_00018599]"	chr10:107831949-107831102	hs|10q25.1	Agilent_HUMAN_G3V2	TCONS_00018599	TCONS_00018599	chr10	107831102	107831949	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29431_PI429285431	6.7633486	P	6.9016833	P	0.908567307686623	0	lncRNA	31187-1_{1..445}	n332816|AF059253|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064829_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064829_04|1.7304300|-0.1839996	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332816|AF059253|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064829_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064829_04|1.7304300|-0.1839996	chr6	 31939134	 31939578	-	NA	NA	NA	NA	STK19	NA	chr6:31938952-31949223	inner
CUST_9838_PI429285431	3.2677774	P	3.6568124	P	0.763640222728269	0	lncRNA	11358-1_{1..1582}	lnc-CDC5L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDC5L-2:1	chr6	 44703761	 44705342	+	lnc-CDC5L-2	lnc-CDC5L-2:1	XLOC_005299	linc-RUNX2-3	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30"	NA	inter
CUST_7291_PI429285431	4.4048176	P	4.0537605	P	1.27549487311359	0	lncRNA	8268-1_{1..309}	"transcript_id ""ENST00000364742.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000364742.1"" | genecode_v17"	chr12	 27959015	 27959323	-	ENSG00000201612.1	ENST00000364742.1	RN7SKP15	RN7SKP15-201	KLHDC5	NA	chr12:27949015-27955973	inter
CUST_29429_PI429285431	1.0965561	A	0.9270924	A	1.12464033898544	0	lncRNA	31185-1_{1..229}	n332812|AF057706|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064767|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064767|-1.2282300|-0.4745222	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332812|AF057706|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064767|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064767|-1.2282300|-0.4745222	chr9	  5299868	  5300096	-	NA	NA	NA	NA	RLN2	NA	chr9:5299868-5304580	inner
CUST_10589_PI429285431	6.390456	P	6.3984027	P	0.994506909798423	0	lncRNA	12119-1_{1..482}	lnc-ADARB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADARB1-1:1	chr21	 46666712	 46667193	+	lnc-ADARB1-1	lnc-ADARB1-1:1	XLOC_013980	linc-COL18A1-5	NA	NA	NA	inter
CUST_50534_PI429285431	1.1634758	A	0.90177894	A	1.19888797621896	0	lncRNA	54228-1_{1..2351}	hg19_lincRNAsTranscripts_TCONS_l2_00030391 range=chrX:149114192-149129256 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030391 range=chrX:149114192-149129256 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	149114192	149116542	+	NA	NA	NA	NA	CXorf40B	NA	chrX:149104192-149106716	inter
CUST_37119_PI429285431	2.5996451	A	3.1043353	P	0.704811710471873	0	lncRNA	38242-1_{1..855}	n345560|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1109|NULL|-1.2992700|-0.3141368	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345560|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1109|NULL|-1.2992700|-0.3141368	chr2	188042972	188043826	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36389_PI429285431	1.003742	A	0.9178276	A	1.0613602329717	0	lncRNA	37607-1_{1..732}	n344906|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_455|NULL|-1.2844300|-0.3253739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344906|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_455|NULL|-1.2844300|-0.3253739	chr6	 56817638	 56818369	-	NA	NA	NA	NA	BEND6	NA	chr6:56819773-56828372	inter
CUST_25617_PI429285431	6.75542	P	7.192689	P	0.738531314920822	0	lncRNA	27146-1_{1..599}	lnc-PRKRIR-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRKRIR-1:4	chr11	 76155322	 76155920	-	lnc-PRKRIR-1	lnc-PRKRIR-1:4	ENSG00000255135.2	RP11-111M22.3	C11orf30	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20chr11:76156069-76165618"	NA	inter
CUST_31549_PI429285431	0.935477	A	0.9199502	A	1.01082048013869	0	lncRNA	33307-2_{3001..4939}	n338038|BX649027|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|425|NULL|0.2569890|-0.3455936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338038|BX649027|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|425|NULL|0.2569890|-0.3455936	chr22	 34489266	 34491204	+	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-32.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50"	NA	inter
LNCA_21_P0010523	1.1089545	A	0.92901886	A	1.13283334739384	0	lncRNA	TCONS_l2_00000171	NA	NA	NA	NA	XLOC_l2_000116	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000116), lincRNA [TCONS_l2_00000171]"	chr1:26554149-26554208	hs|1p36.11	Agilent_HUMAN_G3V2	TCONS_l2_00000171	TCONS_l2_00000171	chr1	 26554149	 26554208	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31876_PI429285431	2.5024238	A	2.5007572	A	1.0011558665906	0	lncRNA	33608-1_{1..1334}	n338429|CR617315|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|826|NULL|-1.0789200|-0.3085307	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338429|CR617315|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|826|NULL|-1.0789200|-0.3085307	chr14	 81688419	 81689752	+	NA	NA	NA	NA	GTF2A1	NA	chr14:81678419-81687575	inter
CUST_7142_PI429285431	0.9664074	A	1.199531	A	0.850790836587982	0	lncRNA	7078-1_{1..630}	"transcript_id ""ENST00000457658.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457658.1"" | genecode_v17"	chrY	 14774265	 14774894	+	ENSG00000233864.3	ENST00000457658.1	TTTY15	TTTY15-002	NA	NA	NA	inter
CUST_45294_PI429285431	0.93936753	A	0.919617	A	1.01378416165604	0	lncRNA	49740-1_{1..935}	"gi|310120293|ref|XR_108924.1| PREDICTED: Homo sapiens Down syndrome encephalopathy related protein 1 (DSERG1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120293|ref|XR_108924.1| PREDICTED: Homo sapiens Down syndrome encephalopathy related protein 1 (DSERG1), misc_RNA"	Chr9	  3465047	  3465981	+	751816	XR_108924.2	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50"	NA	inter
CUST_9616_PI429285431	0.97100985	A	1.2083665	A	0.848298167193668	0	lncRNA	11132-1_{1..780}	lnc-GPR55-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR55-1:11	chr2	231854376	231855155	-	lnc-GPR55-1	lnc-GPR55-1:11	XLOC_002517	linc-GPR55	SPATA3	NA	chr2:231860839-231864552	inter
CUST_43346_PI429285431	6.948036	P	6.881099	P	1.04749038400564	0	lncRNA	48169-1_{1..3000}	"gi|383276544|ref|NR_015368.2| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|383276544|ref|NR_015368.2| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 6, non-coding RNA"	Chr1	   762971	   765970	+	643837	NR_015368.2	NA	NA	NA	NA	NA	inter
CUST_29130_PI429285431	5.217313	P	5.3276114	P	0.92639643075733	0	lncRNA	30869-1_{1..790}	n326634|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001204|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001204|-1.0202600|-0.1918952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326634|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001204|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001204|-1.0202600|-0.1918952	chr1	 38713454	 38714243	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13401_PI429285431	1.1883858	A	0.9221924	A	1.20263045631524	0	lncRNA	15038-1_{1..593}	lnc-HECW2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HECW2-1:1	chr2	197504120	197504712	-	lnc-HECW2-1	lnc-HECW2-1:1	XLOC_002446	linc-HECW2-1	CCDC150	NA	chr2:197504356-197514260	inter
CUST_36102_PI429285431	0.9095478	A	0.9075311	A	1.0013988473946	0	lncRNA	37396-2_{3001..3615}	n344681|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_230|NULL|-1.3191300|-0.2580954	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344681|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_230|NULL|-1.3191300|-0.2580954	chr16	 14402433	 14403047	-	NA	NA	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
CUST_21186_PI429285431	1.2650695	A	0.91340417	A	1.2760327260779	0	lncRNA	22811-1_{1..476}	lnc-TPSG1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TPSG1-2:1	chr16	  1210131	  1210606	-	lnc-TPSG1-2	lnc-TPSG1-2:1	ENSG00000259910.1	RP11-616M22.2	CACNA1H	NA	chr16:1203241-1220176	inner
CUST_35639_PI429285431	3.6597376	P	3.1412797	P	1.4324233088927	0	lncRNA	37054-2_{3001..5900}	n342784|D83243|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5287|NULL|17.2452000|-0.2351070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342784|D83243|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5287|NULL|17.2452000|-0.2351070	chr11	108031119	108034018	-	NA	NA	NA	NA	ACAT1	NA	chr11:108018119-108018895	inner
CUST_34527_PI429285431	0.9320878	A	0.92268294	A	1.00654024680912	0	lncRNA	35990-1_{1..3000}	n341407|BC068276|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3877|NULL|-1.2555800|-0.3006319	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341407|BC068276|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3877|NULL|-1.2555800|-0.3006319	chr13	100647152	100650151	-	NA	NA	NA	NA	ZIC2	NA	chr13:100637152-100639019	inter
CUST_38938_PI429285431	2.6906242	A	3.1708689	A	0.716856025512302	0	lncRNA	39926-1_{1..3000}	n385079|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003srb.1||-0.1070150|-0.4723450	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385079|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003srb.1||-0.1070150|-0.4723450	chr7	  7284224	  7287223	+	NA	NA	NA	NA	C1GALT1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60chr7:7274224-7288251"	NA	inner
LNCA_21_P0007301	1.9850109	A	2.7294683	A	0.596892321498269	0	lncRNA	TCONS_00019542	NA	NA	NA	NA	XLOC_009337	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009337), lincRNA [TCONS_00019542]"	chr11:131064120-131064179	hs|11q25	Agilent_HUMAN_G3V2	TCONS_00019542	TCONS_00019542	chr11	131064120	131064179	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3764_PI429285431	1.1140609	A	0.92571205	A	1.13945887007458	0	lncRNA	3732-1_{1..981}	"transcript_id ""ENST00000418379.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418379.1"" | genecode_v17"	chr10	 92162278	 92163258	-	ENSG00000236373.1	ENST00000418379.1	RP11-15K3.1	RP11-15K3.1-001	NA	NA	NA	inter
CUST_3078_PI429285431	1.892856	A	2.4094124	A	0.69903839327156	0	lncRNA	3057-1_{1..551}	"transcript_id ""ENST00000517714.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517714.1"" | genecode_v17"	chr8	 37458055	 37458605	-	ENSG00000254306.1	ENST00000517714.1	RP11-150O12.4	RP11-150O12.4-001	NA	NA	NA	inter
CUST_11379_PI429285431	1.3366809	A	1.570618	A	0.850311231939439	0	lncRNA	12944-1_{1..615}	lnc-SLC17A9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC17A9-2:1	chr20	 61666917	 61667531	+	lnc-SLC17A9-2	lnc-SLC17A9-2:1	XLOC_013605	linc-BIRC7-6	NA	NA	NA	inter
CUST_25094_PI429285431	0.92161703	A	1.242553	A	0.800550340064348	0	lncRNA	26631-1_{1..869}	lnc-ANGPT2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANGPT2-1:3	chr8	  6565662	  6566530	-	lnc-ANGPT2-1	lnc-ANGPT2-1:3	ENSG00000249898.3	CTD-2541M15.1	AGPAT5	NA	chr8:6565878-6575700	inter
CUST_5557_PI429285431	2.4331298	A	2.9533358	P	0.697272263732135	0	lncRNA	5487-1_{1..359}	"transcript_id ""ENST00000560487.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560487.1"" | genecode_v17"	chr16	 54968825	 54969183	+	ENSG00000259711.1	ENST00000560487.1	CTD-3032H12.2	CTD-3032H12.2-001	IRX5	NA	chr16:54965111-54968397	inter
CUST_40396_PI429285431	6.037244	P	5.6459417	P	1.31157681112127	0	lncRNA	41186-2_{3001..4084}	n409254|NR_033421|lncRNA|Homosapiens||RefGeneNoncode|NR_033421||5.4596000|-0.2919099	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409254|NR_033421|lncRNA|Homosapiens||RefGeneNoncode|NR_033421||5.4596000|-0.2919099	chr12	 51382774	 51383857	-	NA	NA	NA	NA	SLC11A2	NA	chr12:51373566-51422058	inner
CUST_11503_PI429285431	4.2483416	P	4.5549583	P	0.808535654704267	0	lncRNA	13072-1_{1..703}	lnc-AGPAT2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AGPAT2-2:4	chr9	139507155	139507857	-	lnc-AGPAT2-2	lnc-AGPAT2-2:4	XLOC_007896	linc-NOTCH1-1	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40"	NA	inter
CUST_11917_PI429285431	1.3563958	A	1.0887271	A	1.20386089527877	0	lncRNA	13498-1_{1..532}	lnc-ANKRD30A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD30A-3:1	chr10	 37668779	 37669310	+	lnc-ANKRD30A-3	lnc-ANKRD30A-3:1	XLOC_008454	linc-ZNF33A-5	NA	NA	NA	inter
CUST_29154_PI429285431	7.9915805	P	7.5816755	P	1.32859832436864	0	lncRNA	30897-1_{1..1746}	n326665|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000010343|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000010343|2.0860200|-0.2965307	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326665|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000010343|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000010343|2.0860200|-0.2965307	chr1	 29066673	 29068418	+	NA	NA	NA	NA	YTHDF2	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60chr1:29063133-29080366"	NA	inner
CUST_25212_PI429285431	2.6554713	A	3.7831821	P	0.457641312807388	0	lncRNA	26743-1_{1..521}	lnc-ARHGAP26-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARHGAP26-4:7	chr5	142006302	142006822	+	lnc-ARHGAP26-4	lnc-ARHGAP26-4:7	ENSG00000231185.2	AC005592.2	FGF1	NA	chr5:141996302-142016755	inner
CUST_30873_PI429285431	0.90535164	A	1.2370262	A	0.79461362708903	0	lncRNA	32661-1_{1..591}	n336881|AY730282|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332221|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332221|2.0062200|-0.2113505	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336881|AY730282|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332221|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332221|2.0062200|-0.2113505	chrX	 72297161	 72297751	+	NA	NA	NA	NA	PABPC1L2A	NA	chrX:72297177-72299351	inner
CUST_36730_PI429285431	0.91960454	A	0.90627533	A	1.00928191660245	0	lncRNA	37906-1_{1..2594}	n345213|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_762|NULL|-1.4212000|-0.3201414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345213|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_762|NULL|-1.4212000|-0.3201414	chr13	 33883123	 33885716	-	NA	NA	NA	NA	NA	NA	NA	inner
CUST_24489_PI429285431	6.701845	P	7.0552907	P	0.78271245108346	0	lncRNA	26041-1_{1..696}	lnc-MYBBP1A-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYBBP1A-2:3	chr17	  4386827	  4387522	-	lnc-MYBBP1A-2	lnc-MYBBP1A-2:3	ENSG00000262823.1	RP13-580F15.2	SPNS3	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr17:4376827-4391499"	NA	inner
CUST_33250_PI429285431	0.90568674	A	0.9008634	A	1.00334887953108	0	lncRNA	34836-2_{3001..3156}	n339954|AK057130|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2405|NULL|-1.1694900|-0.2647164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339954|AK057130|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2405|NULL|-1.1694900|-0.2647164	chr10	  7203571	  7203726	-	NA	NA	NA	NA	SFMBT2	NA	chr10:7200586-7213727	inner
CUST_34162_PI429285431	1.5582144	A	1.5646174	A	0.995571612953072	0	lncRNA	35680-1_{1..3000}	n341007|L25110|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3473|NULL|-1.1143700|-0.1995375	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341007|L25110|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3473|NULL|-1.1143700|-0.1995375	chr11	 32455620	 32458619	+	NA	NA	NA	NA	WT1	"hg19_refFlat_WT1:range=chr11:32410604-324568915'pad=0,hg19_refFlat_WT1:range=chr11:32410604-324568915'pad=0 3'pad=0 strand=- repeatMasking=none,-111.90chr11:32445620-32457081"	NA	inner
CUST_47480_PI429285431	1.2138274	A	0.8966707	A	1.24587273013644	0	lncRNA	51501-1_{1..676}	"gi|261278374|ref|NR_029395.1| Homo sapiens immunoglobulin lambda-like polypeptide 3, pseudogene (IGLL3P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|261278374|ref|NR_029395.1| Homo sapiens immunoglobulin lambda-like polypeptide 3, pseudogene (IGLL3P), non-coding RNA"	Chr22	 25714224	 25714899	+	91353	NR_029395.1	NA	NA	NA	NA	NA	inter
CUST_13328_PI429285431	3.247986	P	3.5607178	P	0.805115796405974	0	lncRNA	14964-1_{1..869}	lnc-LYPD6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYPD6-1:2	chr2	150146541	150147409	+	lnc-LYPD6-1	lnc-LYPD6-1:2	XLOC_001701	linc-LYPD6	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30"	NA	inter
CUST_27005_PI429285431	1.2261376	A	0.92443323	A	1.23259972128712	0	lncRNA	28533-1_{1..476}	n324107|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000143041|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000143041|-1.0581200|-0.1892913	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324107|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000143041|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000143041|-1.0581200|-0.1892913	chr9	 41267732	 41268207	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-20.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_51830_PI429285431	3.3061805	A	3.6489685	P	0.788516035768701	0	lncRNA	55383-1_{1..1159}	hg19_lincRNAsTranscripts_TCONS_l2_00013076 range=chr19:36806434-36822632 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013076 range=chr19:36806434-36822632 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 36806434	 36807592	-	NA	NA	NA	NA	ZFP14	NA	chr19:36825355-36832632	inter
CUST_16806_PI429285431	0.97367924	A	0.93032813	A	1.0305047179719	0	lncRNA	18512-1_{1..449}	lnc-IFNAR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IFNAR2-1:1	chr21	 34531082	 34531530	+	lnc-IFNAR2-1	lnc-IFNAR2-1:1	XLOC_013920	linc-IFNAR2	NA	NA	NA	inter
CUST_16714_PI429285431	0.9212713	A	0.90872896	A	1.00873158746095	0	lncRNA	18420-1_{1..730}	lnc-PDSS1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDSS1-2:1	chr10	 27198340	 27199069	+	lnc-PDSS1-2	lnc-PDSS1-2:1	XLOC_008422	linc-MASTL	NA	NA	NA	inter
CUST_17968_PI429285431	0.8961651	A	0.9730723	A	0.948087948031786	0	lncRNA	19700-1_{1..1041}	lnc-TRPM1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRPM1-1:7	chr15	 31521475	 31522515	-	lnc-TRPM1-1	lnc-TRPM1-1:7	XLOC_011413	linc-TRPM1	LOC283710	NA	chr15:31514970-31523050	inner
LNCA_21_P0009038	2.8123033	A	2.3274863	A	1.39940834507792	0	lncRNA	TCONS_00024666	NA	NA	NA	NA	XLOC_011951	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011951), lincRNA [TCONS_00024666]"	chr16:55400721-55400662	hs|16q12.2	Agilent_HUMAN_G3V2	TCONS_00024666	TCONS_00024666	chr16	 55400662	 55400721	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003835	0.92779666	A	1.3658576	A	0.738126023452409	0	lncRNA	ENST00000510956	NA	BC034799	NA	Hs.555072	XLOC_003548	NA	ENST00000510956	THC2607947	NA	"BROAD Institute lincRNA (XLOC_003548), lincRNA [TCONS_00008796]"	chr4:58293533-58293592	hs|4q12	Agilent_HUMAN_G3V2	ENST00000510956	ENST00000510956	chr4	 58293533	 58293592	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41894_PI429285431	1.2926959	A	1.7300133	A	0.738506538848925	0	lncRNA	43605-1_{1..60}	ENST00000581357 ncrna:miRNA chromosome:GRCh37:1:45011165:45011224:1 gene:ENSG00000263381 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581357 ncrna:miRNA chromosome:GRCh37:1:45011165:45011224:1 gene:ENSG00000263381 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 45011165	 45011224	+	ENSG00000263381	ENST00000581357	NA	NA	RNF220	NA	chr1:45001165-45021224	inner
CUST_34172_PI429285431	4.924892	P	5.9212756	P	0.501254920928331	0	lncRNA	35689-1_{1..2411}	n341021|AK027515|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3487|NULL|-0.5230120|-0.1725000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341021|AK027515|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3487|NULL|-0.5230120|-0.1725000	chr11	 44951561	 44953971	+	NA	NA	NA	NA	TP53I11	NA	chr11:44953899-44963972	inner
CUST_6436_PI429285431	0.9070515	A	0.9184408	A	0.992136618236271	0	lncRNA	6377-1_{1..420}	"transcript_id ""ENST00000588092.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588092.1"" | genecode_v17"	chr19	 30710573	 30710992	-	ENSG00000267223.1	ENST00000588092.1	AC005597.1	AC005597.1-001	NA	NA	NA	inter
CUST_34715_PI429285431	0.9072142	A	0.9099092	A	0.998133712033595	0	lncRNA	36162-1_{1..210}	n341622|L19364|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4093|NULL|-1.2827000|-0.2251365	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341622|L19364|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4093|NULL|-1.2827000|-0.2251365	chr8	141440152	141440361	+	NA	NA	NA	NA	TRAPPC9	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20chr8:141430152-141450362"	NA	inner
CUST_32212_PI429285431	1.2081627	A	0.89478886	A	1.24261023286529	0	lncRNA	33906-1_{1..3000}	n338787|S57283|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1209|NULL|3.7329900|-0.3072889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338787|S57283|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1209|NULL|3.7329900|-0.3072889	chr13	 78469615	 78472614	-	NA	NA	NA	NA	EDNRB	NA	chr13:78469616-78493903	inner
CUST_49827_PI429285431	1.2635458	A	1.0386243	A	1.16871365472102	0	lncRNA	53585-1_{1..386}	hg19_lincRNAsTranscripts_TCONS_l2_00025965 range=chr7:64649467-64661332 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025965 range=chr7:64649467-64661332 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 64649467	 64649852	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37314_PI429285431	0.92453945	A	0.92606735	A	0.998941501028494	0	lncRNA	38421-1_{1..1263}	n345758|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1307|NULL|-1.3120400|-0.1618811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345758|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1307|NULL|-1.3120400|-0.1618811	chr9	 37405225	 37406487	-	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90"	NA	inter
CUST_25404_PI429285431	1.1835308	A	1.1671965	A	1.0113864112523	0	lncRNA	26935-1_{1..582}	lnc-SP140-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SP140-4:1	chr2	230809806	230810387	+	lnc-SP140-4	lnc-SP140-4:1	ENSG00000231534.1	FBXO36-IT1	FBXO36	NA	chr2:230799806-230819853	inner
CUST_50274_PI429285431	0.9163892	A	0.9152713	A	1.00077516952187	0	lncRNA	53997-1_{1..1005}	hg19_lincRNAsTranscripts_TCONS_l2_00029383 range=chr9:69893984-69901473 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029383 range=chr9:69893984-69901473 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 69893984	 69894988	-	NA	NA	NA	NA	LOC100132154	NA	chr9:69883984-69901078	inter
CUST_38042_PI429285431	4.5989523	P	4.7910843	P	0.875311239054051	0	lncRNA	39123-1_{1..3000}	n377616|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029999||3.1374600|-0.3379665	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377616|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029999||3.1374600|-0.3379665	chr6	  2370338	  2373337	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47619_PI429285431	1.2183526	A	1.2282145	A	0.993187562401295	0	lncRNA	51612-1_{1..3000}	"gi|371940886|ref|NR_045862.1| Homo sapiens armadillo repeat containing, X-linked 4 (ARMCX4), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|371940886|ref|NR_045862.1| Homo sapiens armadillo repeat containing, X-linked 4 (ARMCX4), transcript variant 5, non-coding RNA"	NW_004070883.1	   166929	   169928	+	100131755	NR_045862.1	NA	NA	NA	NA	NA	Unknown
CUST_40358_PI429285431	9.15331	P	9.294563	P	0.906731304933202	0	lncRNA	41159-1_{1..863}	n409099|NR_033212|lncRNA|Homosapiens||RefGeneNoncode|NR_033212||3.2262000|-0.2329393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409099|NR_033212|lncRNA|Homosapiens||RefGeneNoncode|NR_033212||3.2262000|-0.2329393	chrX	 70323738	 70324600	-	NA	NA	NA	NA	FOXO4	NA	chrX:70315999-70323384	inner
LNCA_21_P0011915	6.649953	P	5.045263	P	3.04130393417952	0	lncRNA	TCONS_l2_00014567	NA	NA	NA	NA	XLOC_l2_008013	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008013), lincRNA [TCONS_l2_00014567]"	chr2:49141441-49141382	hs|2p16.3	Agilent_HUMAN_G3V2	TCONS_l2_00014567	TCONS_l2_00014567	chr2	 49141382	 49141441	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37003_PI429285431	0.93238485	A	0.92005515	A	1.008582920645	0	lncRNA	38144-1_{1..759}	n345461|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1010|NULL|-1.2885300|-0.2326105	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n345461|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1010|NULL|-1.2885300|-0.2326105	chr1	144534037	144534795	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40664_PI429285431	5.6237392	P	5.7506313	P	0.915802177233577	0	lncRNA	41397-1_{1..1125}	n410217|NR_037169_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037169_2||-1.1824100|-0.2974794	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410217|NR_037169_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037169_2||-1.1824100|-0.2974794	chr6	  3381592	  3382716	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3371592-3393155	inner
CUST_4676_PI429285431	1.8225695	A	2.1282005	A	0.809088263463887	0	lncRNA	4622-1_{1..210}	"transcript_id ""ENST00000443228.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443228.1"" | genecode_v17"	chr13	 93708910	 93709119	+	ENSG00000232849.1	ENST00000443228.1	RP11-632L2.1	RP11-632L2.1-001	NA	NA	NA	inter
CUST_36368_PI429285431	0.913841	A	0.900603	A	1.00921810984422	0	lncRNA	37588-2_{3001..4267}	n344885|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_434|NULL|-1.2932200|-0.3891559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344885|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_434|NULL|-1.2932200|-0.3891559	chr6	  4002740	  4004006	-	NA	NA	NA	NA	PRPF4B	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00chr6:4021569-4028057"	NA	inter
CUST_15819_PI429285431	4.4010677	P	4.382807	P	1.01273779605057	0	lncRNA	17509-1_{1..214}	lnc-RNF13-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF13-2:1	chr3	149758416	149758629	+	lnc-RNF13-2	lnc-RNF13-2:1	XLOC_002870	linc-TSC22D2-2	NA	NA	NA	inter
CUST_3530_PI429285431	0.9285147	A	0.92748123	A	1.00071660345435	0	lncRNA	3499-1_{1..751}	"transcript_id ""ENST00000436524.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436524.1"" | genecode_v17"	chr9	120224572	120225322	-	ENSG00000233516.1	ENST00000436524.1	RP11-388N2.1	RP11-388N2.1-001	NA	NA	NA	inter
CUST_38072_PI429285431	3.4702883	P	3.4549718	P	1.01067314473637	0	lncRNA	39149-1_{1..951}	n381052|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001aqd.2||-1.0359700|-0.2458546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381052|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001aqd.2||-1.0359700|-0.2458546	chr1	  9732485	  9733435	-	NA	NA	NA	NA	PIK3CD	"hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00chr1:9722485-9757627"	NA	inner
CUST_21781_PI429285431	0.8984799	A	0.8977458	A	1.00050896882595	0	lncRNA	23391-1_{1..235}	lnc-GATAD2B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GATAD2B-1:2	chr1	153723623	153723857	-	lnc-GATAD2B-1	lnc-GATAD2B-1:2	ENSG00000243613.1	RP11-216N14.8	INTS3	"hg19_refFlat_INTS3:range=chr1:153701111-1537457465'pad=0,hg19_refFlat_INTS3:range=chr1:153701111-1537457465'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.20chr1:153713623-153733703"	NA	inner
CUST_10039_PI429285431	0.89189464	A	0.909366	A	0.98796280972198	0	lncRNA	11567-1_{1..1102}	lnc-AC016251.1-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC016251.1-8:1	chr15	 95870059	 95871160	-	lnc-AC016251.1-8	lnc-AC016251.1-8:1	XLOC_011592	linc-RGMA-7	NA	NA	NA	inter
CUST_41525_PI429285431	4.847269	P	5.074568	P	0.854232681959008	0	lncRNA	42769-1_{1..75}	ENST00000408658 ncrna:miRNA chromosome:GRCh37:3:47891045:47891119:1 gene:ENSG00000221585 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408658 ncrna:miRNA chromosome:GRCh37:3:47891045:47891119:1 gene:ENSG00000221585 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 47891045	 47891119	+	ENSG00000221585	ENST00000408658	NA	NA	MAP4	NA	chr3:47892180-47901119	inner
CUST_29280_PI429285431	0.90230936	A	0.8988965	A	1.00236841455981	0	lncRNA	31031-1_{1..499}	n332390|AM990329|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500213|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500213|2.5041100|-0.2392417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332390|AM990329|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500213|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500213|2.5041100|-0.2392417	chr1	 67648590	 67649088	+	NA	NA	NA	NA	IL23R	NA	chr1:67638590-67725662	inner
CUST_12250_PI429285431	0.90625846	A	0.90259016	A	1.00254590713394	0	lncRNA	13856-1_{1..264}	lnc-C14orf177-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf177-4:1	chr14	 98576593	 98576856	+	lnc-C14orf177-4	lnc-C14orf177-4:1	XLOC_010923	linc-C14orf177-2	NA	NA	NA	inter
CUST_799_PI429285431	0.8995985	A	0.89982206	A	0.999845052021992	0	lncRNA	792-1_{1..488}	"transcript_id ""ENST00000435237.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435237.1"" | genecode_v17"	chr2	 21444047	 21444534	+	ENSG00000233005.1	ENST00000435237.1	AC067959.1	AC067959.1-001	NA	NA	NA	inter
CUST_31862_PI429285431	4.462357	P	3.8406558	P	1.53868850572242	0	lncRNA	33594-2_{3001..4077}	n338412|BX647685|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|809|NULL|-0.7107680|-0.3043131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338412|BX647685|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|809|NULL|-0.7107680|-0.3043131	chr14	 75892958	 75894034	-	NA	NA	NA	NA	JDP2	NA	chr14:75894509-75904444	inter
CUST_35788_PI429285431	3.4626281	P	3.6530848	P	0.87632826664858	0	lncRNA	37199-2_{3001..4760}	n344469|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_17|NULL|-1.4842400|-0.3041799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344469|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_17|NULL|-1.4842400|-0.3041799	chr1	159933964	159935723	+	NA	NA	NA	NA	PIGM	NA	chr1:159997462-160001783	inter
CUST_780_PI429285431	0.9399256	A	0.9228799	A	1.01188525383253	0	lncRNA	772-1_{1..432}	"transcript_id ""ENST00000427950.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427950.1"" | genecode_v17"	chr2	 16536453	 16536884	+	ENSG00000224400.1	ENST00000427950.1	AC010880.1	AC010880.1-001	NA	NA	NA	inter
CUST_10399_PI429285431	1.6849581	A	1.2472768	A	1.35442574365325	0	lncRNA	11926-1_{1..341}	lnc-LYPLAL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYPLAL1-1:1	chr1	219419201	219419541	+	lnc-LYPLAL1-1	lnc-LYPLAL1-1:1	XLOC_000566	linc-IARS2-3	NA	NA	NA	inter
CUST_4612_PI429285431	0.92710966	A	1.1520905	A	0.855606388658896	0	lncRNA	4559-1_{1..3000}	"transcript_id ""ENST00000421190.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421190.2"" | genecode_v17"	chr13	 44808254	 44811253	-	ENSG00000230731.2	ENST00000421190.2	RP11-478K15.6	RP11-478K15.6-001	NA	NA	NA	inter
CUST_11105_PI429285431	4.6844845	P	5.3468895	P	0.631824155739685	0	lncRNA	12661-1_{1..364}	lnc-LSM14B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LSM14B-1:1	chr20	 60696528	 60696891	+	lnc-LSM14B-1	lnc-LSM14B-1:1	XLOC_013596	linc-LSM14B-1	LSM14B	NA	chr20:60697517-60706630	inter
CUST_20542_PI429285431	2.2849228	A	2.9077547	A	0.649394963185852	0	lncRNA	22183-1_{1..591}	lnc-C1orf74-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf74-1:1	chr1	209960924	209961514	-	lnc-C1orf74-1	lnc-C1orf74-1:1	ENSG00000232222.1	RP3-434O14.8	IRF6	NA	chr1:209958968-209971038	inner
CUST_30396_PI429285431	3.5514126	P	4.0036974	P	0.73088442729305	0	lncRNA	32176-1_{1..223}	n335516|BC062677|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000260568|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000260568|-1.0299300|-0.1590267	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335516|BC062677|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000260568|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000260568|-1.0299300|-0.1590267	chr17	 38573068	 38573290	-	NA	NA	NA	NA	TOP2A	NA	chr17:38563068-38574202	inner
CUST_25009_PI429285431	7.0746713	P	7.5034714	P	0.742879386657504	0	lncRNA	26549-1_{1..2360}	lnc-TIMM9-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMM9-2:8	chr14	 58764673	 58767032	-	lnc-TIMM9-2	lnc-TIMM9-2:8	ENSG00000257621.2	RP11-349A22.5	ARID4A	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60chr14:58754673-58774838"	NA	inter
CUST_47804_PI429285431	3.4247074	P	2.7669148	A	1.57766686202472	0	lncRNA	51723-2_{3001..3662}	"gi|392959809|ref|NR_027436.2| Homo sapiens FSHD region gene 1 pseudogene (LOC283788), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392959809|ref|NR_027436.2| Homo sapiens FSHD region gene 1 pseudogene (LOC283788), non-coding RNA"	NT_167213.1	    59349	    60010	-	283788	NR_027436.2	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00"	NA	Unknown
LNCA_21_P0003019	2.2248573	A	0.927151	A	2.45837721370179	0	lncRNA	TCONS_00006175	NA	NA	NA	NA	XLOC_002779	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002779), lincRNA [TCONS_00006175]"	chr3:119817790-119844930	hs|3q13.33	Agilent_HUMAN_G3V2	TCONS_00006175	TCONS_00006175	chr3	119817790	119844930	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007707	3.039599	P	3.5805748	P	0.687305876669281	0	lncRNA	TCONS_00020779	NA	NA	NA	NA	XLOC_010069	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010069), lincRNA [TCONS_00020779]"	chr12:49682122-49682063	hs|12q13.12	Agilent_HUMAN_G3V2	TCONS_00020779	TCONS_00020779	chr12	 49682063	 49682122	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16988_PI429285431	1.1075159	A	1.4773498	A	0.773871588830171	0	lncRNA	18698-1_{1..655}	lnc-ZNF599-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF599-3:2	chr19	 35351078	 35351732	-	lnc-ZNF599-3	lnc-ZNF599-3:2	XLOC_013308	linc-ZNF599-3	NA	NA	NA	inter
CUST_46267_PI429285431	1.0470175	A	1.4493151	A	0.7566522976946	0	lncRNA	50506-1_{1..222}	"gi|397139891|ref|XR_158876.1| PREDICTED: Homo sapiens uncharacterized LOC100996267 (LOC100996267), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139891|ref|XR_158876.1| PREDICTED: Homo sapiens uncharacterized LOC100996267 (LOC100996267), misc_RNA"	Chr13	111597825	111598046	-	100996267	XR_158876.2	NA	NA	NA	NA	NA	inter
CUST_37921_PI429285431	5.726439	P	6.054005	P	0.796879782290762	0	lncRNA	39010-1_{1..231}	n346462|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2012|NULL|-1.4234400|-0.2117079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346462|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2012|NULL|-1.4234400|-0.2117079	chr5	  1576658	  1576888	+	NA	NA	NA	NA	NA	"hg19_refFlat_SDHA:range=chr5:218471-2565355'pad=0,hg19_refFlat_SDHA:range=chr5:218471-2565355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90"	NA	inter
CUST_10370_PI429285431	1.5702425	A	0.9110071	A	1.57924543287662	0	lncRNA	11896-1_{1..1033}	lnc-MRPS9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPS9-1:1	chr2	105720080	105721112	+	lnc-MRPS9-1	lnc-MRPS9-1:1	XLOC_001607	linc-GPR45-3	MRPS9	NA	chr2:105710080-105716418	inter
CUST_18253_PI429285431	0.91284794	A	0.9052754	A	1.00526268427972	0	lncRNA	19988-1_{1..540}	lnc-KCNH8-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-KCNH8-3:4	chr3	 18568666	 18569205	+	lnc-KCNH8-3	lnc-KCNH8-3:4	ENSG00000228956	AC144521.1	NA	NA	NA	inter
CUST_36313_PI429285431	0.9054163	A	0.9055363	A	0.999916825797499	0	lncRNA	37545-1_{1..957}	n344840|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_389|NULL|-1.3220600|-0.3787898	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344840|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_389|NULL|-1.3220600|-0.3787898	chr5	102000259	102001215	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14779_PI429285431	0.9210349	A	0.9297475	A	0.993979084671064	0	lncRNA	16440-1_{1..886}	lnc-DMRTA2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRTA2-1:2	chr1	 50786689	 50787574	-	lnc-DMRTA2-1	lnc-DMRTA2-1:2	XLOC_000832	linc-AGBL4-1	NA	NA	NA	inter
CUST_21435_PI429285431	1.622976	A	1.404507	A	1.16349821708834	0	lncRNA	23054-1_{1..2597}	lnc-OR6Y1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OR6Y1-1:1	chr1	158464192	158466788	-	lnc-OR6Y1-1	lnc-OR6Y1-1:1	ENSG00000236656.1	RP11-144L1.4	OR6Y1	"hg19_refFlat_OR10R2:range=chr1:158449668-1584506755'pad=0,hg19_refFlat_OR10R2:range=chr1:158449668-1584506755'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70chr1:158461010-158474676"	NA	inter
CUST_24724_PI429285431	9.114215	P	8.536459	P	1.49252593415452	0	lncRNA	26270-1_{1..921}	lnc-SESN3-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SESN3-2:5	chr11	 94706453	 94707373	-	lnc-SESN3-2	lnc-SESN3-2:5	ENSG00000150316.7	CWC15	KDM4D	NA	chr11:94706845-94716710	inner
LNCA_21_P0008596	0.98436075	A	1.6411651	A	0.634281711466563	0	lncRNA	TCONS_00023314	NA	NA	NA	NA	XLOC_011181	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011181), lincRNA [TCONS_00023314]"	chr15:24779076-24780879	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023314	TCONS_00023314	chr15	 24779076	 24780879	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010225	0.9912525	A	0.97903186	A	1.00850668007249	0	lncRNA	TCONS_00028980	NA	NA	NA	NA	XLOC_013894	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013894), lincRNA [TCONS_00028980]"	chr21:28602980-28603039	hs|21q21.3	Agilent_HUMAN_G3V2	TCONS_00028980	TCONS_00028980	chr21	 28602980	 28603039	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28656_PI429285431	6.2089376	P	6.2884355	P	0.946386959712877	0	lncRNA	30347-2_{3001..3620}	n326034|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047293|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047293|0.0159834|-0.3096696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326034|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047293|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047293|0.0159834|-0.3096696	chr10	 27263140	 27263759	-	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80"	NA	inter
CUST_19590_PI429285431	1.0840757	A	1.2569221	A	0.887090746376087	0	lncRNA	21246-1_{1..770}	lnc-SKIV2L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SKIV2L2-1:1	chr5	 54590668	 54591437	+	lnc-SKIV2L2-1	lnc-SKIV2L2-1:1	ENSG00000251307.1	RP11-506H20.1	DHX29	"hg19_refFlat_DHX29:range=chr5:54552316-546034015'pad=0,hg19_refFlat_DHX29:range=chr5:54552316-546034015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30chr5:54580668-54601029"	NA	inner
CUST_6296_PI429285431	5.5689597	P	6.1022587	P	0.690972883597667	0	lncRNA	6220-1_{1..1880}	"transcript_id ""ENST00000588960.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588960.1"" | genecode_v17"	chr19	  1573595	  1575474	-	ENSG00000267161.1	ENST00000588960.1	AC005943.5	AC005943.5-001	MBD3	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00chr19:1576678-1585474"	NA	inter
CUST_3293_PI429285431	3.054168	A	3.0612564	P	0.995098746061687	0	lncRNA	3271-1_{1..553}	"transcript_id ""ENST00000517482.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517482.1"" | genecode_v17"	chr8	125283924	125284476	+	ENSG00000253227.1	ENST00000517482.1	RP11-383J24.1	RP11-383J24.1-001	NA	NA	NA	inter
CUST_7182_PI429285431	1.0049276	A	1.0207238	A	0.989110631638623	0	lncRNA	7407-1_{1..320}	"transcript_id ""ENST00000516173.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516173.1"" | genecode_v17"	chr2	218116279	218116598	+	ENSG00000251982.1	ENST00000516173.1	RN7SKP43	RN7SKP43-201	NA	NA	NA	inter
CUST_14183_PI429285431	0.9144292	A	0.91593206	A	0.998958839212622	0	lncRNA	15835-1_{1..491}	lnc-EBF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EBF1-1:1	chr5	157942003	157942493	-	lnc-EBF1-1	lnc-EBF1-1:1	XLOC_005063	linc-CLINT1-1	NA	NA	NA	inter
CUST_27396_PI429285431	0.9309439	A	0.9301081	A	1.00057950025895	0	lncRNA	28960-1_{1..507}	n324561|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040133|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040133|-1.3261600|-0.3787641	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324561|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040133|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040133|-1.3261600|-0.3787641	chr6	 27096210	 27096716	+	NA	NA	NA	NA	HIST1H4I	NA	chr6:27107088-27107457	inter
CUST_44622_PI429285431	7.0814066	P	5.966613	P	2.16564024031502	0	lncRNA	49188-3_{6001..6287}	"gi|197099983|ref|NR_024084.1| Homo sapiens SAP30-like (SAP30L), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|197099983|ref|NR_024084.1| Homo sapiens SAP30-like (SAP30L), transcript variant 4, non-coding RNA"	Chr5	153831517	153831803	+	79685	NR_024084.1	NA	NA	NA	NA	NA	inter
CUST_17177_PI429285431	4.4901257	P	4.3135986	P	1.13016005202822	0	lncRNA	18888-1_{1..1158}	lnc-JPH4-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JPH4-1:8	chr14	 24198787	 24199944	-	lnc-JPH4-1	lnc-JPH4-1:8	XLOC_010971	linc-JPH4-2	NA	NA	NA	inter
CUST_2434_PI429285431	0.9085303	A	1.2569906	A	0.785421883399384	0	lncRNA	2426-1_{1..555}	"transcript_id ""ENST00000517733.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517733.1"" | genecode_v17"	chr5	173134617	173135171	-	ENSG00000253686.1	ENST00000517733.1	CTB-43E15.3	CTB-43E15.3-002	NA	NA	NA	inter
CUST_17793_PI429285431	0.9087461	A	0.9077798	A	1.00067001247873	0	lncRNA	19525-1_{1..950}	lnc-C8orf48-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C8orf48-1:1	chr8	 13489201	 13490150	+	lnc-C8orf48-1	lnc-C8orf48-1:1	XLOC_006723	linc-TUSC3	NA	NA	NA	inter
CUST_5357_PI429285431	3.9578254	P	4.2901807	P	0.794238774700524	0	lncRNA	5295-1_{1..364}	"transcript_id ""ENST00000560360.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560360.1"" | genecode_v17"	chr15	 98589896	 98590259	-	ENSG00000259199.1	ENST00000560360.1	CTD-2544M6.1	CTD-2544M6.1-001	NA	NA	NA	inter
CUST_21667_PI429285431	0.87194407	A	0.92751735	A	0.962212015422738	0	lncRNA	23277-1_{1..823}	lnc-MAPK6-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAPK6-6:2	chr15	 52431801	 52432623	+	lnc-MAPK6-6	lnc-MAPK6-6:2	ENSG00000259709.1	CTD-2184D3.7	GNB5	NA	chr15:52421801-52442443	inner
CUST_1913_PI429285431	0.9497347	A	1.4295086	A	0.717089997960646	0	lncRNA	1904-1_{1..455}	"transcript_id ""ENST00000504369.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504369.1"" | genecode_v17"	chr4	139220010	139220464	-	ENSG00000248397.1	ENST00000504369.1	LINC00498	LINC00498-001	NA	NA	NA	inter
CUST_22795_PI429285431	1.0361996	A	1.01599	A	1.01410680222475	0	lncRNA	24375-1_{1..680}	lnc-CYP3A43-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYP3A43-2:1	chr7	 99546105	 99546784	+	lnc-CYP3A43-2	lnc-CYP3A43-2:1	ENSG00000237640.1	RP4-604G5.1	NA	"hg19_refFlat_GJC3:range=chr7:99521168-995272435'pad=0,hg19_refFlat_GJC3:range=chr7:99521168-995272435'pad=0 3'pad=0 strand=- repeatMasking=none,-105.80"	NA	inter
LNCA_21_P0010625	1.2243347	A	1.0243549	A	1.14868227152571	0	lncRNA	TCONS_l2_00001282	NA	NA	NA	NA	XLOC_l2_000945	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000945), lincRNA [TCONS_l2_00001282]"	chr1:68808315-68808256	hs|1p31.3	Agilent_HUMAN_G3V2	TCONS_l2_00001282	TCONS_l2_00001282	chr1	 68808256	 68808315	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41970_PI429285431	1.1582786	A	1.0429021	A	1.08325770631123	0	lncRNA	43765-1_{1..125}	ENST00000579524 ncrna:miRNA chromosome:GRCh37:10:323124:323248:1 gene:ENSG00000264248 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579524 ncrna:miRNA chromosome:GRCh37:10:323124:323248:1 gene:ENSG00000264248 gene_biotype:miRNA transcript_biotype:miRNA	chr10	   323124	   323248	+	ENSG00000264248	ENST00000579524	NA	NA	DIP2C	NA	chr10:320130-333248	inner
CUST_28332_PI429285431	0.9276066	A	0.9259056	A	1.001179738699	0	lncRNA	29977-1_{1..631}	n325637|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045723|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045723|-1.1655400|-0.3132764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325637|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045723|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045723|-1.1655400|-0.3132764	chr13	105826911	105827541	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30585_PI429285431	2.3981812	A	2.2241955	A	1.1281709549653	0	lncRNA	32367-1_{1..354}	n335865|X58810|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322289|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322289|1.7882400|-0.2439518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335865|X58810|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322289|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322289|1.7882400|-0.2439518	chr7	142250708	142251061	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2976_PI429285431	1.0687419	A	0.9179155	A	1.11020523420576	0	lncRNA	2955-1_{1..564}	"transcript_id ""ENST00000519393.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519393.1"" | genecode_v17"	chr8	  2523614	  2524177	-	ENSG00000254319.1	ENST00000519393.1	RP11-134O21.1	RP11-134O21.1-006	NA	NA	NA	inter
CUST_3170_PI429285431	0.9202218	A	0.9225331	A	0.998399211552395	0	lncRNA	3149-1_{1..736}	"transcript_id ""ENST00000521051.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521051.1"" | genecode_v17"	chr8	 71383347	 71384082	-	ENSG00000253143.1	ENST00000521051.1	RP11-333A23.3	RP11-333A23.3-001	NA	NA	NA	inter
CUST_23489_PI429285431	0.92156994	A	1.0708737	A	0.90168550816112	0	lncRNA	25056-1_{1..172}	lnc-FANCF-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FANCF-2:1	chr11	 22383762	 22383933	-	lnc-FANCF-2	lnc-FANCF-2:1	ENSG00000254540.1	CTD-2140G10.4	SLC17A6	NA	chr11:22373762-22393840	inner
CUST_50304_PI429285431	0.9245796	A	0.9254634	A	0.999387584125021	0	lncRNA	54021-2_{3001..4369}	hg19_lincRNAsTranscripts_TCONS_l2_00029500 range=chr9:99855064-99861040 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029500 range=chr9:99855064-99861040 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 99858064	 99859432	-	NA	NA	NA	NA	NA	"hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90"	NA	inter
CUST_51490_PI429285431	0.97573704	A	0.9756114	A	1.00008709080395	0	lncRNA	55066-1_{1..1041}	hg19_lincRNAsTranscripts_TCONS_l2_00010195 range=chr16:56137606-56224229 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010195 range=chr16:56137606-56224229 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 56137606	 56138646	-	NA	NA	NA	NA	GNAO1	NA	chr16:56225251-56234229	inter
CUST_22833_PI429285431	3.9076285	P	4.124349	P	0.860519326862892	0	lncRNA	24413-1_{1..651}	lnc-CBLL1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CBLL1-1:3	chr7	107384818	107385468	+	lnc-CBLL1-1	lnc-CBLL1-1:3	ENSG00000241764.1	AC002467.7	CBLL1	NA	chr7:107384279-107395026	inter
LNCA_21_P0014719	1.2248056	A	0.9270789	A	1.22920598794957	0	lncRNA	XR_112623	XR_112623	XR_112623	NA	Hs.640220	LOC100507930	uncharacterized LOC100507930	NA	THC2622486	NA	"PREDICTED: Homo sapiens hypothetical LOC100507930 (LOC100507930), miscRNA [XR_112623]"	chr4:24673110-24673169	hs|4p15.2	Agilent_HUMAN_G3V2	XR_112623	XR_112623	chr4	 24673110	 24673169	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006327	4.787194	P	4.9625845	P	0.885527797332603	0	lncRNA	ENST00000454408	NA	NA	NA	NA	XLOC_007867	NA	ENST00000454408	THC2720901	NA	"BROAD Institute lincRNA (XLOC_007867), lincRNA [TCONS_00016490]"	chr9:132209059-132209000	hs|9q34.11	Agilent_HUMAN_G3V2	ENST00000454408	ENST00000454408	chr9	132209000	132209059	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5248_PI429285431	2.1233745	A	1.2032309	A	1.89230363628958	0	lncRNA	5188-1_{1..702}	"transcript_id ""ENST00000560590.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560590.1"" | genecode_v17"	chr15	 77861312	 77862013	+	ENSG00000259420.1	ENST00000560590.1	RP11-307C19.2	RP11-307C19.2-002	NA	NA	NA	inter
CUST_44870_PI429285431	9.378344	P	9.344412	P	1.02379864355744	0	lncRNA	49394-1_{1..2443}	"gi|190194404|ref|NR_023384.1| Homo sapiens ring finger protein 216 pseudogene 1 (RNF216P1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|190194404|ref|NR_023384.1| Homo sapiens ring finger protein 216 pseudogene 1 (RNF216P1), transcript variant 1, non-coding RNA"	Chr7	  5013616	  5016058	+	441191	NR_023384.1	NA	NA	NA	NA	NA	inter
CUST_47050_PI429285431	0.9217956	A	0.926437	A	0.996787996232974	0	lncRNA	51139-1_{1..2015}	"gi|260436926|ref|NR_028594.1| Homo sapiens zinc finger protein 833, pseudogene (ZNF833P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|260436926|ref|NR_028594.1| Homo sapiens zinc finger protein 833, pseudogene (ZNF833P), non-coding RNA"	Chr19	 11784813	 11786827	+	401898	NR_028594.1	NA	NA	NA	NA	NA	inter
CUST_38909_PI429285431	4.3323607	P	4.6068172	P	0.826761721710602	0	lncRNA	39898-1_{1..592}	n384976|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pmm.2||-1.1756900|-0.2887516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384976|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pmm.2||-1.1756900|-0.2887516	chr6	 88494577	 88495168	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7028_PI429285431	3.4774806	P	4.717788	P	0.423282456321549	0	lncRNA	6975-1_{1..3000}	"transcript_id ""ENST00000449605.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449605.1"" | genecode_v17"	chrX	 21911718	 21914717	+	ENSG00000231771.1	ENST00000449605.1	RP11-147O5.1	RP11-147O5.1-001	MBTPS2	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chrX:21901718-21903541"	NA	inter
CUST_27026_PI429285431	1.5651287	A	1.7891874	A	0.85615344888927	0	lncRNA	28556-1_{1..486}	n324131|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001050|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001050|-1.3201500|-0.4219796	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324131|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001050|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001050|-1.3201500|-0.4219796	chr9	 33722972	 33723457	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23086_PI429285431	0.917104	A	0.91055685	A	1.00454845150864	0	lncRNA	24658-1_{1..643}	lnc-GLYATL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLYATL2-1:1	chr11	 58695790	 58696432	-	lnc-GLYATL2-1	lnc-GLYATL2-1:1	ENSG00000255523.1	RP11-780O24.2	GLYATL1	NA	chr11:58695102-58706162	inner
CUST_30528_PI429285431	6.479308	P	6.536725	P	0.960983123398345	0	lncRNA	32308-1_{1..311}	n335686|CR617802|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000296997|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000296997|-1.3262500|-0.3836845	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335686|CR617802|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000296997|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000296997|-1.3262500|-0.3836845	chr14	101201224	101201534	+	NA	NA	NA	NA	DLK1	NA	chr14:101193202-101201467	inner
CUST_38726_PI429285431	1.3268658	A	2.6121616	A	0.410286673499467	0	lncRNA	39721-1_{1..657}	n384219|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bwp.1||3.7973600|-0.2172661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384219|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bwp.1||3.7973600|-0.2172661	chr3	 12299295	 12299951	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10265_PI429285431	1.4930416	A	2.2105563	A	0.60814417735796	0	lncRNA	11791-1_{1..289}	lnc-C2CD4A-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2CD4A-5:4	chr15	 62897012	 62897300	+	lnc-C2CD4A-5	lnc-C2CD4A-5:4	XLOC_011280	linc-TLN2-1	NA	NA	NA	inter
CUST_4201_PI429285431	11.045944	P	11.098753	P	0.964057431927253	0	lncRNA	4160-1_{1..670}	"transcript_id ""ENST00000536131.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536131.1"" | genecode_v17"	chr12	 24857499	 24858168	+	ENSG00000255745.1	ENST00000536131.1	RP11-625L16.1	RP11-625L16.1-001	NA	NA	NA	inter
CUST_28991_PI429285431	0.9179997	A	0.90745866	A	1.00733324969821	0	lncRNA	30715-1_{1..436}	n326475|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033547|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033547|-1.0232100|-0.3181288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326475|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033547|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033547|-1.0232100|-0.3181288	chr1	113377817	113378252	+	NA	NA	NA	NA	NA	"hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50"	NA	inter
CUST_23623_PI429285431	0.95177156	A	1.6985373	A	0.595938045859714	0	lncRNA	25190-1_{1..447}	lnc-SP3-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SP3-3:3	chr2	174136239	174136685	-	lnc-SP3-3	lnc-SP3-3:3	ENSG00000238133.2	MLK7-AS1	ZAK	NA	chr2:174126239-174132737	inter
CUST_39140_PI429285431	2.2271636	A	1.574544	A	1.57202003009753	0	lncRNA	40116-1_{1..1897}	n385761|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dio.1||1.7032300|-0.3178223	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385761|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dio.1||1.7032300|-0.3178223	chrX	 47566589	 47568485	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13161_PI429285431	0.92900586	A	0.9235485	A	1.00378991733998	0	lncRNA	14790-1_{1..3000}	lnc-C5orf38-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C5orf38-1:7	chr5	  2934141	  2937140	+	lnc-C5orf38-1	lnc-C5orf38-1:7	XLOC_004256	linc-IRX1-8	NA	NA	NA	inter
CUST_39551_PI429285431	0.909736	A	0.91246575	A	0.99810967041164	0	lncRNA	40496-1_{1..2885}	n387493|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ftu.1||-1.2175800|-0.2709433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387493|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ftu.1||-1.2175800|-0.2709433	chr6	  1003694	  1006578	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70"	NA	inter
CUST_35829_PI429285431	3.1987772	P	3.3159955	P	0.921963601329905	0	lncRNA	37232-1_{1..1388}	n344502|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_50|NULL|-1.2442700|-0.1679036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344502|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_50|NULL|-1.2442700|-0.1679036	chr6	 27661842	 27663229	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35585_PI429285431	5.247937	P	3.2242901	P	4.06610339147192	0	lncRNA	36999-3_{6001..6956}	n342719|AL832149|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5221|NULL|0.4297870|-0.3572989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342719|AL832149|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5221|NULL|0.4297870|-0.3572989	chr17	 65072553	 65073508	-	NA	NA	NA	NA	HELZ	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr17:65066554-65083490"	NA	inner
LNCA_21_P0012352	0.993466	A	1.2091678	A	0.861127161906172	0	lncRNA	ENST00000466426	NA	NA	NA	NA	XLOC_l2_009500	NA	ENST00000466426	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009500), lincRNA [TCONS_l2_00018371]"	chr22:24396490-24396431	hs|22q11.23	Agilent_HUMAN_G3V2	ENST00000466426	ENST00000466426	chr22	 24396431	 24396490	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3471712	17.27997	P	17.300737	P	0.985708519256656	0	lncRNA	ENST00000448179	XR_108282	XR_108282	NA	Hs.551839	NA	NA	ENST00000448179	THC2491916	NA	"PREDICTED: Homo sapiens hypothetical LOC284600 (LOC284600), miscRNA [XR_108282]"	chr1:850266-850325	hs|1p36.33	Agilent_HUMAN_G3V2	ENST00000448179	ENST00000448179	chr1	   850266	   850325	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47845_PI429285431	8.10002	P	7.8922286	P	1.15491878219407	0	lncRNA	51751-1_{1..843}	"gi|410171082|ref|XR_159179.2| PREDICTED: Homo sapiens postmeiotic segregation increased 4-like protein-like (LOC100996753), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171082|ref|XR_159179.2| PREDICTED: Homo sapiens postmeiotic segregation increased 4-like protein-like (LOC100996753), misc_RNA"	NA	NA	NA	NA	NA	XR_159179.2	NA	NA	NA	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00"	NA	Unknown
CUST_30948_PI429285431	1.0052736	A	1.746883	A	0.598071800396266	0	lncRNA	32736-1_{1..268}	n337053|DQ126686|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341916|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341916|1.3828100|-0.1166719	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337053|DQ126686|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341916|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341916|1.3828100|-0.1166719	chr11	 66485914	 66486181	-	NA	NA	NA	NA	SPTBN2	NA	chr11:66475914-66488870	inner
CUST_37809_PI429285431	5.10235	P	5.092381	P	1.00693391326877	0	lncRNA	38901-2_{3001..6000}	n346323|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1873|NULL|-1.2968200|-0.1783892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346323|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1873|NULL|-1.2968200|-0.1783892	chr11	  3433942	  3436941	+	NA	NA	NA	NA	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0,hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0,hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0,hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0 3'pad=0 strand=- repeatMasking=none,-101.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0,hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10"	NA	inter
LNCA_21_P0002412	4.270895	P	4.119545	P	1.11060823618725	0	lncRNA	TCONS_00004173	NA	NA	NA	NA	XLOC_002013	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002013), lincRNA [TCONS_00004173]"	chr2:21320612-21320553	hs|2p24.1	Agilent_HUMAN_G3V2	TCONS_00004173	TCONS_00004173	chr2	 21320553	 21320612	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31757_PI429285431	2.8743563	A	3.2208185	A	0.786510428574032	0	lncRNA	33497-1_{1..462}	n338296|AF161344|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|690|NULL|-0.9441450|-0.1031875	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338296|AF161344|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|690|NULL|-0.9441450|-0.1031875	chr1	159879883	159880344	-	NA	NA	NA	NA	CCDC19	NA	chr1:159869883-159869906	inter
CUST_40496_PI429285431	8.200636	P	8.536839	P	0.792123344296241	0	lncRNA	41261-1_{1..2092}	n409431|NR_033822_7|lncRNA|Homosapiens||RefGeneNoncode|NR_033822_7||5.4355300|-0.2156327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409431|NR_033822_7|lncRNA|Homosapiens||RefGeneNoncode|NR_033822_7||5.4355300|-0.2156327	chr6	 30594612	 30596703	+	NA	NA	NA	NA	ATAT1	NA	chr6:30594613-30614598	inner
CUST_13910_PI429285431	3.4513187	P	3.3865414	P	1.04592347452796	0	lncRNA	15557-1_{1..1103}	lnc-EVX1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EVX1-5:3	chr7	 27226302	 27227404	+	lnc-EVX1-5	lnc-EVX1-5:3	XLOC_006025	linc-EVX1-2	HOXA10	NA	chr7:27216302-27219880	inter
CUST_20737_PI429285431	0.9088102	A	0.90101504	A	1.0054178167504	0	lncRNA	22371-1_{1..411}	lnc-ATP13A4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATP13A4-1:1	chr3	193345018	193345428	-	lnc-ATP13A4-1	lnc-ATP13A4-1:1	ENSG00000224855.1	OPA1-AS1	OPA1	"hg19_refFlat_OPA1:range=chr3:193311167-1934099165'pad=0,hg19_refFlat_OPA1:range=chr3:193311167-1934099165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00chr3:193335018-193355126"	NA	inner
CUST_33993_PI429285431	3.9772356	P	3.3529742	A	1.54142147952883	0	lncRNA	35530-1_{1..1493}	n340806|BC056895|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3269|NULL|7.8209600|-0.3332397	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340806|BC056895|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3269|NULL|7.8209600|-0.3332397	chr17	 65174893	 65176385	-	NA	NA	NA	NA	HELZ	NA	chr17:65164893-65241319	inner
CUST_32895_PI429285431	2.1106644	A	1.8735994	A	1.17859250759027	0	lncRNA	34522-1_{1..510}	n339565|AF085997|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2007|NULL|0.1294730|-0.2607199	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339565|AF085997|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2007|NULL|0.1294730|-0.2607199	chr3	133372473	133372982	+	NA	NA	NA	NA	TOPBP1	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40chr3:133362473-133380737"	NA	inner
CUST_42639_PI429285431	5.6121645	P	5.959278	P	0.786155441125364	0	lncRNA	45518-1_{1..65}	ENST00000386062 ncrna:snoRNA chromosome:GRCh37:4:152024979:152025043:1 gene:ENSG00000208797 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000386062 ncrna:snoRNA chromosome:GRCh37:4:152024979:152025043:1 gene:ENSG00000208797 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	152024979	152025043	+	ENSG00000208797	ENST00000386062	NA	NA	RPS3A	NA	chr4:152020754-152025804	inter
CUST_43541_PI429285431	0.91418207	A	0.9122149	A	1.00136446838025	0	lncRNA	48322-3_{6001..6964}	"gi|388490238|ref|NR_049773.1| Homo sapiens KIAA1324 (KIAA1324), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388490238|ref|NR_049773.1| Homo sapiens KIAA1324 (KIAA1324), transcript variant 4, non-coding RNA"	Chr1	109662585	109663548	+	57535	NR_049773.1	NA	NA	NA	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	inter
CUST_13390_PI429285431	0.9217796	A	0.9119516	A	1.00683550664785	0	lncRNA	15026-1_{1..1276}	lnc-AL445989.1-19:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL445989.1-19:3	chr13	 68610324	 68611599	+	lnc-AL445989.1-19	lnc-AL445989.1-19:3	XLOC_010419	linc-C13orf34-6	NA	NA	NA	inter
CUST_10075_PI429285431	1.6005108	A	1.6621225	A	0.958193080276952	0	lncRNA	11600-1_{1..1875}	lnc-MTHFSD-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTHFSD-3:1	chr16	 86519238	 86521112	-	lnc-MTHFSD-3	lnc-MTHFSD-3:1	XLOC_012047	linc-COX4NB-8	NA	NA	NA	inter
CUST_740_PI429285431	3.3310015	A	2.9681394	A	1.28597455768256	0	lncRNA	732-1_{1..1852}	"transcript_id ""ENST00000483023.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000483023.1"" | genecode_v17"	chr2	  9814152	  9816003	+	ENSG00000244260.1	ENST00000483023.1	RP11-521D12.2	RP11-521D12.2-001	NA	NA	NA	inter
CUST_3139_PI429285431	2.8436139	A	3.2722547	P	0.742961418699392	0	lncRNA	3118-1_{1..535}	"transcript_id ""ENST00000523042.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523042.1"" | genecode_v17"	chr8	 62737887	 62738421	+	ENSG00000254119.1	ENST00000523042.1	RP11-705O24.1	RP11-705O24.1-010	NA	NA	NA	inter
CUST_32088_PI429285431	1.184437	A	1.4463972	A	0.833954050012983	0	lncRNA	33794-1_{1..1983}	n338651|AK023568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1065|NULL|-1.1555400|-0.3988648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338651|AK023568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1065|NULL|-1.1555400|-0.3988648	chr13	 36796149	 36798131	-	NA	NA	NA	NA	C13orf38	NA	chr13:36801179-36808129	inner
CUST_23971_PI429285431	1.9667009	A	1.4107695	A	1.47011743079525	0	lncRNA	25526-1_{1..237}	lnc-MAGOH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-MAGOH-1:1	chr1	 53757701	 53757937	-	lnc-MAGOH-1	lnc-MAGOH-1:1	ENSG00000225030.1	RP4-784A16.3	LRP8	NA	chr1:53747701-53767810	inner
CUST_13426_PI429285431	6.092104	P	6.5152946	P	0.745773479829457	0	lncRNA	15064-1_{1..507}	lnc-TRPM1-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRPM1-1:11	chr15	 31521475	 31521981	-	lnc-TRPM1-1	lnc-TRPM1-1:11	XLOC_011413	linc-TRPM1	LOC283710	NA	chr15:31514970-31523050	inner
CUST_47949_PI429285431	0.9304808	A	1.2537895	A	0.799234796161068	0	lncRNA	51841-1_{1..869}	"gi|410172499|ref|XR_171816.1| PREDICTED: Homo sapiens chromosome 9 open reading frame 147 (C9orf147), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172499|ref|XR_171816.1| PREDICTED: Homo sapiens chromosome 9 open reading frame 147 (C9orf147), misc_RNA"	NA	NA	NA	NA	NA	XR_171816.1	NA	NA	NA	NA	NA	Unknown
CUST_50981_PI429285431	3.4040105	P	3.8458848	P	0.736177570411364	0	lncRNA	54624-1_{1..971}	hg19_lincRNAsTranscripts_TCONS_l2_00006435 range=chr12:112747410-112819923 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006435 range=chr12:112747410-112819923 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	112747410	112748380	-	NA	NA	NA	NA	C12orf51	NA	chr12:112737410-112819896	inner
CUST_44959_PI429285431	8.69185	P	8.407297	P	1.21803281382749	0	lncRNA	49470-1_{1..1783}	"gi|119709841|ref|NR_003110.2| Homo sapiens chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1 (CCT6P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|119709841|ref|NR_003110.2| Homo sapiens chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1 (CCT6P1), non-coding RNA"	NW_004775430.1	   203936	   205718	+	643253	NR_003110.2	NA	NA	NA	NA	NA	Unknown
CUST_27722_PI429285431	0.89957476	A	0.90078354	A	0.999162488459813	0	lncRNA	29303-1_{1..698}	n324936|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000259432|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000259432|-1.0807300|-0.4154225	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324936|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000259432|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000259432|-1.0807300|-0.4154225	chr20	 54586025	 54586722	+	NA	NA	NA	NA	CBLN4	NA	chr20:54576025-54580012	inter
CUST_11729_PI429285431	0.9161049	A	1.0581878	A	0.906209864229465	0	lncRNA	13308-1_{1..389}	lnc-LAMA2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LAMA2-1:2	chr6	129015101	129015489	+	lnc-LAMA2-1	lnc-LAMA2-1:2	XLOC_005461	linc-LAMA2	NA	NA	NA	inter
LNCA_21_P0002542	0.92697906	A	0.9131954	A	1.00959989122771	0	lncRNA	TCONS_00004578	NA	NA	NA	NA	XLOC_002488	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002488), lincRNA [TCONS_00004578]"	chr2:217929710-217929651	hs|2q35	Agilent_HUMAN_G3V2	TCONS_00004578	TCONS_00004578	chr2	217929651	217929710	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6637_PI429285431	1.0880831	A	0.9134085	A	1.12870979549479	0	lncRNA	6583-1_{1..388}	"transcript_id ""ENST00000428954.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428954.1"" | genecode_v17"	chr20	  7237227	  7237614	-	ENSG00000238102.1	ENST00000428954.1	RP11-19D2.1	RP11-19D2.1-001	NA	NA	NA	inter
CUST_5046_PI429285431	3.1334705	P	4.9417596	P	0.285529339083068	0	lncRNA	4986-2_{3001..3108}	"transcript_id ""ENST00000554735.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554735.1"" | genecode_v17"	chr14	102026641	102026748	-	ENSG00000258498.1	ENST00000554735.1	DIO3OS	DIO3OS-006	DIO3	NA	chr14:102027688-102029789	inter
CUST_21544_PI429285431	4.220702	P	4.8028545	P	0.667966428108576	0	lncRNA	23161-1_{1..653}	lnc-SLC38A5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC38A5-1:1	chrX	 48367107	 48367759	-	lnc-SLC38A5-1	lnc-SLC38A5-1:1	ENSG00000224292.1	AF196972.9	PORCN	NA	chrX:48367371-48377226	inter
CUST_28772_PI429285431	0.9231705	A	1.0735822	A	0.900993310636442	0	lncRNA	30479-1_{1..933}	n326177|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092707|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092707|-1.1214400|-0.3968269	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326177|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092707|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092707|-1.1214400|-0.3968269	chr1	232862639	232863571	+	NA	NA	NA	NA	NA	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10"	NA	inter
CUST_42538_PI429285431	4.553634	P	4.7091446	P	0.897814561264356	0	lncRNA	45337-1_{1..131}	ENST00000516969 ncrna:snoRNA chromosome:GRCh37:11:8576563:8576693:1 gene:ENSG00000252778 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516969 ncrna:snoRNA chromosome:GRCh37:11:8576563:8576693:1 gene:ENSG00000252778 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	  8576563	  8576693	+	ENSG00000252778	ENST00000516969	NA	NA	STK33	NA	chr11:8566563-8586693	inner
CUST_30077_PI429285431	0.9194824	A	0.9193914	A	1.00006307838279	0	lncRNA	31846-1_{1..424}	n334595|U79029|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221460_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221460_05|-1.2395100|-0.3102749	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334595|U79029|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221460_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221460_05|-1.2395100|-0.3102749	chr6	  2863338	  2863761	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14377_PI429285431	1.1525546	A	0.9063021	A	1.18612207593155	0	lncRNA	16038-1_{1..289}	lnc-STOX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STOX2-1:1	chr4	185195162	185195450	+	lnc-STOX2-1	lnc-STOX2-1:1	XLOC_003805	linc-CCDC111-4	NA	NA	NA	inter
CUST_22540_PI429285431	0.91315275	A	1.2092099	A	0.814475298326843	0	lncRNA	24127-1_{1..1447}	lnc-RP11-380D23.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-380D23.1.1-1:1	chr4	111440196	111441642	-	lnc-RP11-380D23.1.1-1	lnc-RP11-380D23.1.1-1:1	ENSG00000250511.1	RP11-380D23.1	ENPEP	"hg19_refFlat_ENPEP:range=chr4:111397571-1114827145'pad=0,hg19_refFlat_ENPEP:range=chr4:111397571-1114827145'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20chr4:111430196-111450661"	NA	inner
CUST_14274_PI429285431	1.1278771	A	0.90422034	A	1.16768954972453	0	lncRNA	15932-1_{1..202}	lnc-NUDCD2-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUDCD2-6:3	chr5	164668635	164668836	-	lnc-NUDCD2-6	lnc-NUDCD2-6:3	XLOC_005071	linc-NUDCD2-2	NA	NA	NA	inter
CUST_6684_PI429285431	2.140472	A	2.9774303	P	0.55982262533935	0	lncRNA	6632-1_{1..603}	"transcript_id ""ENST00000451556.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451556.2"" | genecode_v17"	chr20	 32602775	 32603377	-	ENSG00000228386.2	ENST00000451556.2	RP5-1125A11.4	RP5-1125A11.4-001	RALY	NA	chr20:32592775-32615555	inner
CUST_34021_PI429285431	1.980894	A	2.0605323	A	0.946294863836657	0	lncRNA	35554-1_{1..398}	n340838|AF520801|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3302|NULL|-1.1008900|-0.3034487	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340838|AF520801|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3302|NULL|-1.1008900|-0.3034487	chr6	  9939521	  9939918	-	NA	NA	NA	NA	TFAP2A	NA	chr6:10214083-10221841	inter
CUST_30385_PI429285431	0.9174889	A	0.9174998	A	0.999992444724273	0	lncRNA	32165-1_{1..615}	n335502|BC056671|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259567|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259567|1.5497400|-0.3255945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335502|BC056671|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259567|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259567|1.5497400|-0.3255945	chr14	 66953085	 66953699	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51528_PI429285431	8.465067	P	8.708562	P	0.844696512678657	0	lncRNA	55098-4_{9001..12000}	hg19_lincRNAsTranscripts_TCONS_l2_00011139 range=chr17:20432533-20460098 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011139 range=chr17:20432533-20460098 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 20441533	 20444532	-	NA	NA	NA	NA	CDRT15L2	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70chr17:20422533-20470098"	NA	inter
CUST_45119_PI429285431	5.3291707	P	5.5058875	P	0.884714087026778	0	lncRNA	49600-1_{1..756}	"gi|310120135|ref|XR_108712.1| PREDICTED: Homo sapiens uncharacterized LOC100506380, transcript variant 1 (LOC100506380), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310120135|ref|XR_108712.1| PREDICTED: Homo sapiens uncharacterized LOC100506380, transcript variant 1 (LOC100506380), misc_RNA"	NA	NA	NA	NA	NA	XR_108712.1	NA	NA	NA	NA	NA	Unknown
CUST_12931_PI429285431	0.8992148	A	0.8982156	A	1.00069283256049	0	lncRNA	14559-1_{1..339}	lnc-KLHL32-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL32-4:4	chr6	 98417282	 98417620	+	lnc-KLHL32-4	lnc-KLHL32-4:4	XLOC_005397	linc-POU3F2-3	NA	NA	NA	inter
CUST_32681_PI429285431	1.6199464	A	2.0575244	A	0.738373151391659	0	lncRNA	34331-1_{1..2999}	n339312|AL137668|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1744|NULL|1.0110200|-0.1570973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339312|AL137668|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1744|NULL|1.0110200|-0.1570973	chr16	 84492864	 84495862	-	NA	NA	NA	NA	ATP2C2	"hg19_refFlat_ATP2C2:range=chr16:84402222-844973385'pad=0,hg19_refFlat_ATP2C2:range=chr16:84402222-844973385'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.20chr16:84482864-84497793"	NA	inner
LNCA_33_P3322874	4.987957	P	5.2051997	P	0.860207908397113	0	lncRNA	XR_109931	XR_109931	XR_109931	100128131	Hs.638438	LOC100128131	uncharacterized LOC100128131	NA	THC2632239	NA	"PREDICTED: Homo sapiens hypothetical LOC100128131 (LOC100128131), miscRNA [XR_109931]"	chr2:105488775-105488716	hs|2q12.1	Agilent_HUMAN_G3V2	XR_109931	XR_109931	chr2	105488716	105488775	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47604_PI429285431	12.595805	P	12.310713	P	1.2184879636154	0	lncRNA	51607-1_{1..3000}	"gi|383087740|ref|NR_001564.2| Homo sapiens X (inactive)-specific transcript (non-protein coding) (XIST), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|383087740|ref|NR_001564.2| Homo sapiens X (inactive)-specific transcript (non-protein coding) (XIST), non-coding RNA"	ChrX	 73040486	 73043485	-	7503	NR_001564.2	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_13968_PI429285431	9.3597765	P	9.485341	P	0.916645306598729	0	lncRNA	15614-1_{1..400}	lnc-CSRP2BP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CSRP2BP-1:1	chr20	 18051485	 18051884	+	lnc-CSRP2BP-1	lnc-CSRP2BP-1:1	XLOC_013470	linc-PET117	NA	NA	NA	inter
CUST_7905_PI429285431	2.548587	A	0.90129316	A	3.13245512087395	0	lncRNA	9520-1_{1..1835}	lnc-TTC7A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TTC7A-1:1	chr2	 47134023	 47135857	+	lnc-TTC7A-1	lnc-TTC7A-1:1	ENSG00000228925	AC016722.4	MCFD2	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_MCFD2:range=chr2:47132602-471363105'pad=0,hg19_refFlat_MCFD2:range=chr2:47132602-471363105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MCFD2:range=chr2:47132602-471351015'pad=0,hg19_refFlat_MCFD2:range=chr2:47132602-471351015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MCFD2:range=chr2:47132602-471688025'pad=0,hg19_refFlat_MCFD2:range=chr2:47132602-471688025'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90chr2:47129009-47145817"	NA	inner
CUST_21452_PI429285431	0.8993499	A	0.8991975	A	1.00010564120996	0	lncRNA	23071-1_{1..543}	lnc-BARD1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BARD1-1:2	chr2	215548839	215549381	-	lnc-BARD1-1	lnc-BARD1-1:2	ENSG00000197585.5	AC107218.3	NA	NA	NA	inter
CUST_13799_PI429285431	3.7942522	P	3.9002352	P	0.929171623082149	0	lncRNA	15442-1_{1..3000}	lnc-COIL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COIL-1:1	chr17	 55123510	 55126509	-	lnc-COIL-1	lnc-COIL-1:1	XLOC_012529	linc-COIL-4	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RNF126:range=chr19:648128-6631215'pad=0,hg19_refFlat_RNF126:range=chr19:648128-6631215'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.30"	NA	inter
CUST_32688_PI429285431	3.020134	A	3.6661692	P	0.639034089758664	0	lncRNA	34335-2_{3001..6000}	n339316|CR627169|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1748|NULL|-0.7688600|-0.1675337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339316|CR627169|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1748|NULL|-0.7688600|-0.1675337	chr16	 86118014	 86121013	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0,hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.00;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90"	NA	inter
CUST_36094_PI429285431	4.06748	P	5.069382	P	0.499341251362584	0	lncRNA	37393-3_{6001..9000}	n344678|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_227|NULL|-1.3041500|-0.3744234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n344678|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_227|NULL|-1.3041500|-0.3744234	chr6	 72089204	 72092203	-	NA	NA	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-22.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.50"	NA	inter
CUST_21440_PI429285431	0.9125745	A	0.92112494	A	0.994090814941649	0	lncRNA	23059-1_{1..396}	lnc-ZBTB2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZBTB2-3:1	chr6	151376907	151377302	-	lnc-ZBTB2-3	lnc-ZBTB2-3:1	ENSG00000232290.1	RP1-292B18.3	MTHFD1L	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50chr6:151366907-151387193"	NA	inner
CUST_37136_PI429285431	1.1786515	A	1.7717549	A	0.662915366362026	0	lncRNA	38259-1_{1..3000}	n345577|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1126|NULL|-1.5497000|-0.2635588	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345577|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1126|NULL|-1.5497000|-0.2635588	chr3	 44046929	 44049928	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11490_PI429285431	1.1783631	A	0.89463955	A	1.21733273035949	0	lncRNA	13058-1_{1..1571}	lnc-ZFP42-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP42-2:1	chr4	188542831	188544401	+	lnc-ZFP42-2	lnc-ZFP42-2:1	XLOC_003829	linc-ZFP42-3	NA	NA	NA	inter
CUST_11282_PI429285431	0.9043574	A	1.0206165	A	0.922576788117908	0	lncRNA	12842-1_{1..869}	lnc-RP11-785H20.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-785H20.1.1-1:2	chr8	123005837	123006705	+	lnc-RP11-785H20.1.1-1	lnc-RP11-785H20.1.1-1:2	XLOC_006911	linc-ZHX2-1	NA	NA	NA	inter
CUST_26017_PI429285431	5.4023094	P	4.811295	P	1.5063055014751	0	lncRNA	27536-1_{1..511}	lnc-MAP6-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP6-1:3	chr11	 75283523	 75284033	-	lnc-MAP6-1	lnc-MAP6-1:3	ENSG00000254969.1	RP11-939C17.2	SERPINH1	"hg19_refFlat_SERPINH1:range=chr11:75277395-752831285'pad=0,hg19_refFlat_SERPINH1:range=chr11:75277395-752831285'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40chr11:75273523-75283849"	NA	inner
CUST_30204_PI429285431	3.9450974	P	4.2577815	P	0.805142416486646	0	lncRNA	31979-1_{1..299}	n335019|AJ512826|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248381|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248381|1.2431800|-0.0437563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335019|AJ512826|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248381|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248381|1.2431800|-0.0437563	chr1	109740230	109740528	+	NA	NA	NA	NA	KIAA1324	NA	chr1:109730230-109749403	inner
CUST_21873_PI429285431	3.686363	P	3.8331244	P	0.903275886006915	0	lncRNA	23483-1_{1..1862}	lnc-UBXN4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-UBXN4-1:1	chr2	136579245	136581106	+	lnc-UBXN4-1	lnc-UBXN4-1:1	ENSG00000226806.1	AC011893.3	LCT	"hg19_refFlat_LCT:range=chr2:136545894-1365947395'pad=0,hg19_refFlat_LCT:range=chr2:136545894-1365947395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50chr2:136569245-136590657"	NA	inner
CUST_28402_PI429285431	4.269725	P	4.2813525	P	0.991972822404757	0	lncRNA	30059-1_{1..1058}	n325722|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045118|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045118|-0.2776360|-0.3413453	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325722|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045118|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045118|-0.2776360|-0.3413453	chr13	 53587924	 53588981	-	NA	NA	NA	NA	OLFM4	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20chr13:53602876-53615002"	NA	inner
CUST_40261_PI429285431	8.3642025	P	6.0893016	P	4.83964390603327	0	lncRNA	41072-1_{1..1950}	n408190|NR_028334|lncRNA|Homosapiens||RefGeneNoncode|NR_028334||5.9791600|-0.1560733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n408190|NR_028334|lncRNA|Homosapiens||RefGeneNoncode|NR_028334||5.9791600|-0.1560733	chr17	 26603011	 26604960	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1283_PI429285431	6.6034737	P	6.7002115	P	0.935145138569486	0	lncRNA	1274-1_{1..497}	"transcript_id ""ENST00000423193.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423193.1"" | genecode_v17"	chr3	   898807	   899303	+	ENSG00000224239.1	ENST00000423193.1	AC090044.2	AC090044.2-001	NA	NA	NA	inter
CUST_11709_PI429285431	1.3753866	A	0.928174	A	1.36340350783411	0	lncRNA	13287-1_{1..252}	lnc-GABRG2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GABRG2-1:1	chr5	162181103	162181354	+	lnc-GABRG2-1	lnc-GABRG2-1:1	XLOC_004624	linc-CCNG1	NA	NA	NA	inter
CUST_10077_PI429285431	0.894598	A	1.0033833	A	0.927368545947873	0	lncRNA	11603-1_{1..354}	lnc-DHX37-10:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-10:8	chr12	127232477	127232830	-	lnc-DHX37-10	lnc-DHX37-10:8	XLOC_010244	linc-DHX37-4	NA	NA	NA	inter
CUST_27252_PI429285431	5.780767	P	7.057728	P	0.412663859540389	0	lncRNA	28802-1_{1..601}	n324395|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316059|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316059|-1.2828200|-0.4859247	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324395|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316059|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316059|-1.2828200|-0.4859247	chr6	132264796	132265396	+	NA	NA	NA	NA	CTGF	NA	chr6:132269316-132272518	inner
CUST_39895_PI429285431	0.90709686	A	0.91039866	A	0.997713983563783	0	lncRNA	40780-1_{1..3000}	n406596|NR_024115|lncRNA|Homosapiens||RefGeneNoncode|NR_024115||2.6855400|-0.2010907	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406596|NR_024115|lncRNA|Homosapiens||RefGeneNoncode|NR_024115||2.6855400|-0.2010907	chr7	150322463	150325462	-	NA	NA	NA	NA	GIMAP6	NA	chr7:150312463-150329680	inner
CUST_10372_PI429285431	0.9334145	A	0.9307188	A	1.00187026362004	0	lncRNA	11898-1_{1..828}	lnc-RNF34-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF34-1:1	chr12	121829773	121830600	+	lnc-RNF34-1	lnc-RNF34-1:1	XLOC_009914	linc-RNF34	RNF34	NA	chr12:121837902-121840215	inter
CUST_42646_PI429285431	3.6824052	P	3.1507502	A	1.44558656174277	0	lncRNA	45534-1_{1..131}	ENST00000362412 ncrna:snoRNA chromosome:GRCh37:13:73160818:73160948:1 gene:ENSG00000199282 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362412 ncrna:snoRNA chromosome:GRCh37:13:73160818:73160948:1 gene:ENSG00000199282 gene_biotype:snoRNA transcript_biotype:snoRNA	chr13	 73160818	 73160948	+	ENSG00000199282	ENST00000362412	NA	NA	NA	NA	NA	inter
CUST_15825_PI429285431	7.45924	P	7.489934	P	0.978949266491393	0	lncRNA	17514-1_{1..1961}	lnc-PIEZO2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIEZO2-7:1	chr18	 10247401	 10249361	-	lnc-PIEZO2-7	lnc-PIEZO2-7:1	XLOC_012760	linc-PPP4R1-5	NA	NA	NA	inter
CUST_10431_PI429285431	3.8049426	P	3.5701602	P	1.17672923914295	0	lncRNA	11959-1_{1..878}	lnc-IFITM3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IFITM3-1:2	chr11	   311035	   311912	-	lnc-IFITM3-1	lnc-IFITM3-1:2	XLOC_009349	linc-IFITM5	IFITM1	NA	chr11:313991-315272	inter
CUST_50019_PI429285431	3.6438298	P	3.8967621	P	0.839189016020163	0	lncRNA	53755-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00028088 range=chr8:8091508-8102116 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028088 range=chr8:8091508-8102116 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	  8091508	  8094507	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0,hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0 3'pad=0 strand=- repeatMasking=none,-103.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-60.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0,hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0 3'pad=0 strand=- repeatMasking=none,-94.10;hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0,hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0,hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0 3'pad=0 strand=- repeatMasking=none,-94.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70"	NA	inter
CUST_1418_PI429285431	0.9249342	A	0.926812	A	0.998699254927526	0	lncRNA	1407-1_{1..519}	"transcript_id ""ENST00000593837.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593837.1"" | genecode_v17"	chr3	107041316	107041834	-	ENSG00000239828.2	ENST00000593837.1	RP11-446H18.5	RP11-446H18.5-009	CCDC54	NA	chr3:107046680-107097481	inter
CUST_13931_PI429285431	6.2640433	P	6.3534446	P	0.939912720055878	0	lncRNA	15578-1_{1..368}	lnc-PPP1R14C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP1R14C-1:1	chr6	150593859	150594226	+	lnc-PPP1R14C-1	lnc-PPP1R14C-1:1	XLOC_005502	linc-IYD	NA	NA	NA	inter
CUST_23378_PI429285431	10.462464	P	10.161321	P	1.23212019520474	0	lncRNA	24946-1_{1..353}	lnc-C11orf54-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-C11orf54-1:1	chr11	 93454679	 93455031	+	lnc-C11orf54-1	lnc-C11orf54-1:1	ENSG00000254911.1	SCARNA9	KIAA1731	NA	chr11:93444679-93463522	inner
CUST_49477_PI429285431	1.3725706	A	1.7887739	A	0.749394191189154	0	lncRNA	53271-1_{1..340}	hg19_lincRNAsTranscripts_TCONS_l2_00024560 range=chr6:1464388-1489827 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024560 range=chr6:1464388-1489827 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	  1464388	  1464727	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45525_PI429285431	1.5685523	A	1.2891119	A	1.2137240075443	0	lncRNA	49933-1_{1..366}	"gi|397139359|ref|XR_158860.1| PREDICTED: Homo sapiens uncharacterized LOC100507445 (LOC100507445), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139359|ref|XR_158860.1| PREDICTED: Homo sapiens uncharacterized LOC100507445 (LOC100507445), misc_RNA"	NA	NA	NA	NA	NA	XR_158860.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-60.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60"	NA	Unknown
CUST_11054_PI429285431	3.5855393	P	3.8640625	P	0.824434509418136	0	lncRNA	12603-1_{1..1362}	lnc-DTWD2-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DTWD2-3:5	chr5	117859344	117860705	-	lnc-DTWD2-3	lnc-DTWD2-3:5	XLOC_004965	linc-SEMA6A-2	NA	NA	NA	inter
CUST_27664_PI429285431	0.9174671	A	0.9126231	A	1.00336324801207	0	lncRNA	29242-1_{1..465}	n324871|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171044|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171044|-1.0711400|-0.4130197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324871|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171044|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171044|-1.0711400|-0.4130197	chr21	 22335363	 22335827	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47437_PI429285431	1.0339392	A	1.329165	A	0.814944773268062	0	lncRNA	51471-1_{1..2913}	"gi|397139947|ref|XR_109699.2| PREDICTED: Homo sapiens uncharacterized LOC100287576 (LOC100287576), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139947|ref|XR_109699.2| PREDICTED: Homo sapiens uncharacterized LOC100287576 (LOC100287576), misc_RNA"	NA	NA	NA	NA	NA	XR_109699.2	NA	NA	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00"	NA	Unknown
CUST_11186_PI429285431	1.9437721	A	1.751464	A	1.14259023081818	0	lncRNA	12743-1_{1..706}	lnc-SRBD1-4:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SRBD1-4:8	chr2	 45402254	 45402959	-	lnc-SRBD1-4	lnc-SRBD1-4:8	XLOC_002078	linc-SIX2-2	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60"	NA	inter
CUST_1273_PI429285431	9.8590765	P	9.607299	P	1.19067320333422	0	lncRNA	1265-1_{1..553}	"transcript_id ""ENST00000448543.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448543.1"" | genecode_v17"	chr2	239628965	239629517	+	ENSG00000234279.1	ENST00000448543.1	AC113618.1	AC113618.1-001	NA	NA	NA	inter
CUST_43990_PI429285431	0.92516285	A	1.6619766	A	0.600063153536822	0	lncRNA	48689-1_{1..1611}	"gi|354459364|ref|NR_045375.1| Homo sapiens uncharacterized LOC100506124 (LOC100506124), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|354459364|ref|NR_045375.1| Homo sapiens uncharacterized LOC100506124 (LOC100506124), non-coding RNA"	Chr2	166713985	166715595	-	100506124	NR_045375.1	NA	NA	NA	NA	NA	inter
CUST_18245_PI429285431	1.0700186	A	0.91178393	A	1.11592082419147	0	lncRNA	19979-1_{1..3000}	lnc-RP11-181C3.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RP11-181C3.1.1-2:1	chr12	 98909769	 98912768	-	lnc-RP11-181C3.1.1-2	lnc-RP11-181C3.1.1-2:1	ENSG00000257167	RP11-181C3.2	TMPO	"hg19_refFlat_TMPO:range=chr12:98909646-989416365'pad=0,hg19_refFlat_TMPO:range=chr12:98909646-989416365'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.20;hg19_refFlat_TMPO:range=chr12:98909646-989281205'pad=0,hg19_refFlat_TMPO:range=chr12:98909646-989281205'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.20chr12:98909351-98920200"	NA	inner
CUST_33417_PI429285431	1.5461962	A	1.4049246	A	1.10287676975522	0	lncRNA	34997-1_{1..3000}	n340146|AF272890|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2606|NULL|-1.1255600|-0.3295665	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340146|AF272890|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2606|NULL|-1.1255600|-0.3295665	chr10	115805528	115808527	+	NA	NA	NA	NA	ADRB1	NA	chr10:115803806-115806667	inner
CUST_8141_PI429285431	3.854111	P	3.7489073	P	1.07564625462002	0	lncRNA	9744-1_{1..563}	lnc-OSBPL6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OSBPL6-2:2	chr2	179298109	179298671	+	lnc-OSBPL6-2	lnc-OSBPL6-2:2	ENSG00000223960	AC009948.5	PRKRA	NA	chr2:179296141-179308242	inner
CUST_3228_PI429285431	0.9234185	A	0.9268152	A	0.997648356428238	0	lncRNA	3207-1_{1..587}	"transcript_id ""ENST00000523284.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523284.1"" | genecode_v17"	chr8	 93577671	 93578257	-	ENSG00000253634.1	ENST00000523284.1	RP11-587H10.2	RP11-587H10.2-001	NA	NA	NA	inter
CUST_34996_PI429285431	1.6570904	A	1.1800773	A	1.39185903017115	0	lncRNA	36409-1_{1..1076}	n341921|BC039104|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4402|NULL|-1.0377100|-0.2328580	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341921|BC039104|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4402|NULL|-1.0377100|-0.2328580	chr12	 52604713	 52605788	+	NA	NA	NA	NA	KRT7	NA	chr12:52626954-52627597	inter
CUST_27976_PI429285431	2.625909	A	3.4805076	P	0.553019171382016	0	lncRNA	29581-1_{1..562}	n325226|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329809|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329809|-1.1382000|-0.3311903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325226|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329809|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329809|-1.1382000|-0.3311903	chr2	100652785	100653346	-	NA	NA	NA	NA	AFF3	NA	chr2:100642785-100668932	inner
CUST_28669_PI429285431	0.9194722	A	0.916341	A	1.00217273943664	0	lncRNA	30361-1_{1..708}	n326048|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047096|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047096|-0.4785250|-0.5013678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326048|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047096|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047096|-0.4785250|-0.5013678	chr10	 20050912	 20051619	-	NA	NA	NA	NA	PLXDC2	NA	chr10:20040912-20067485	inter
CUST_36523_PI429285431	2.9976265	P	2.6727378	A	1.25256780269608	0	lncRNA	37722-1_{1..1505}	n345023|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_572|NULL|-1.3342900|-0.3154249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345023|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_572|NULL|-1.3342900|-0.3154249	chr8	124474844	124476348	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17551_PI429285431	7.0165777	P	6.320307	P	1.62031094569279	0	lncRNA	19278-1_{1..1825}	lnc-CA5A-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CA5A-4:7	chr16	 88212390	 88214214	-	lnc-CA5A-4	lnc-CA5A-4:7	XLOC_012057	linc-CA5A-2	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60"	NA	inter
CUST_4938_PI429285431	1.6091384	A	0.9296059	A	1.60162067181649	0	lncRNA	4882-1_{1..790}	"transcript_id ""ENST00000555913.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555913.1"" | genecode_v17"	chr14	 88277326	 88278115	+	ENSG00000259077.1	ENST00000555913.1	RP11-804L24.2	RP11-804L24.2-001	NA	NA	NA	inter
CUST_30261_PI429285431	5.1120677	P	5.42443	P	0.805322027368085	0	lncRNA	32036-1_{1..414}	n335138|AY243319|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251171|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251171|0.2274700|-0.3804843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335138|AY243319|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251171|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251171|0.2274700|-0.3804843	chr18	 55888767	 55889180	+	NA	NA	NA	NA	NEDD4L	NA	chr18:55878767-55929306	inner
CUST_4175_PI429285431	0.996658	A	1.0054361	A	0.99393395791157	0	lncRNA	4133-1_{1..260}	"transcript_id ""ENST00000539266.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539266.2"" | genecode_v17"	chr12	 16939696	 16939955	+	ENSG00000255740.2	ENST00000539266.2	RP11-239A17.1	RP11-239A17.1-001	NA	NA	NA	inter
CUST_51039_PI429285431	7.6126375	P	7.2877727	P	1.25254705255716	0	lncRNA	54681-1_{1..211}	hg19_lincRNAsTranscripts_TCONS_l2_00006704 range=chr13:19961173-19962000 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006704 range=chr13:19961173-19962000 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 19961173	 19961383	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39988_PI429285431	0.94075406	A	1.353496	A	0.751194320257047	0	lncRNA	40855-3_{6001..9000}	n407092|NR_024593|lncRNA|Homosapiens||RefGeneNoncode|NR_024593||3.4704200|-0.1636103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407092|NR_024593|lncRNA|Homosapiens||RefGeneNoncode|NR_024593||3.4704200|-0.1636103	chr22	 25047132	 25050131	-	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0,hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10"	NA	inter
CUST_6119_PI429285431	0.9236824	A	0.9169565	A	1.00467292283141	0	lncRNA	6045-1_{1..596}	"transcript_id ""ENST00000583558.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583558.1"" | genecode_v17"	chr18	 22236957	 22237552	+	ENSG00000265485.1	ENST00000583558.1	RP11-449D8.1	RP11-449D8.1-002	NA	NA	NA	inter
CUST_37498_PI429285431	1.1118966	A	0.9743187	A	1.10005671051864	0	lncRNA	38600-1_{1..1084}	n345965|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1514|NULL|-1.5529400|-0.1881581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345965|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1514|NULL|-1.5529400|-0.1881581	chr21	 44873000	 44874083	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47299_PI429285431	11.931892	P	11.3080635	P	1.54095902472291	0	lncRNA	51365-1_{1..959}	"gi|308082007|ref|NR_036658.1| Homo sapiens ZNFX1 antisense RNA 1 (ZNFX1-AS1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|308082007|ref|NR_036658.1| Homo sapiens ZNFX1 antisense RNA 1 (ZNFX1-AS1), transcript variant 4, non-coding RNA"	Chr20	 47894715	 47895673	+	441951	NR_036658.1	NA	NA	NA	NA	NA	inter
CUST_34850_PI429285431	4.415178	P	4.7508698	P	0.792404072511159	0	lncRNA	36276-1_{1..1032}	n341754|AF155065|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4228|NULL|7.2841500|-0.0668045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341754|AF155065|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4228|NULL|7.2841500|-0.0668045	chr9	111899737	111900768	-	NA	NA	NA	NA	EPB41L4B	NA	chr9:111934254-111939571	inner
CUST_9422_PI429285431	1.0302852	A	1.1552228	A	0.917043706673503	0	lncRNA	10926-1_{1..203}	lnc-ADAMTS7-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAMTS7-1:3	chr15	 79010710	 79010912	-	lnc-ADAMTS7-1	lnc-ADAMTS7-1:3	XLOC_011540	linc-CHRNB4	NA	NA	NA	inter
CUST_14400_PI429285431	4.6829343	P	4.699912	P	0.988300927730104	0	lncRNA	16061-1_{1..266}	lnc-FAM105B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM105B-2:1	chr5	 14892472	 14892737	+	lnc-FAM105B-2	lnc-FAM105B-2:1	XLOC_004299	linc-FBXL7-2	NA	NA	NA	inter
CUST_15793_PI429285431	2.0868974	A	2.1610878	A	0.949875014635269	0	lncRNA	17483-1_{1..2015}	lnc-CRYBA4-1:29	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:29	chr22	 27175847	 27177861	+	lnc-CRYBA4-1	lnc-CRYBA4-1:29	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
CUST_2799_PI429285431	2.3564062	A	1.9175647	A	1.35551539650859	0	lncRNA	2783-1_{1..380}	"transcript_id ""ENST00000440074.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440074.1"" | genecode_v17"	chr7	 33908113	 33908492	-	ENSG00000233219.1	ENST00000440074.1	RP11-89N17.3	RP11-89N17.3-001	NA	NA	NA	inter
CUST_33638_PI429285431	0.93340963	A	0.9211338	A	1.00854526102462	0	lncRNA	35203-1_{1..326}	n340400|AF056419|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2861|NULL|-1.3614800|-0.4088766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340400|AF056419|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2861|NULL|-1.3614800|-0.4088766	chr5	 11131014	 11131339	+	NA	NA	NA	NA	CTNND2	NA	chr5:11121014-11141339	inner
CUST_16162_PI429285431	6.1665597	P	6.3270807	P	0.894701909164721	0	lncRNA	17868-1_{1..256}	lnc-BTBD17-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTBD17-4:5	chr17	 72108785	 72109040	-	lnc-BTBD17-4	lnc-BTBD17-4:5	XLOC_012572	linc-SDK2-2	NA	NA	NA	inter
CUST_28250_PI429285431	0.91360307	A	0.90527654	A	1.00578819804988	0	lncRNA	29886-1_{1..3000}	n325543|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255327|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255327|-0.3793330|-0.3366590	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325543|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255327|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255327|-0.3793330|-0.3366590	chr17	 65102520	 65105519	+	NA	NA	NA	NA	HELZ	"hg19_refFlat_HELZ:range=chr17:65074368-652149205'pad=0,hg19_refFlat_HELZ:range=chr17:65074368-652149205'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr17:65092520-65146087"	NA	inner
CUST_14686_PI429285431	1.3692188	A	2.0372198	A	0.629378150500587	0	lncRNA	16355-1_{1..1366}	lnc-PRSS23-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-PRSS23-1:4	chr11	 86710918	 86712283	+	lnc-PRSS23-1	lnc-PRSS23-1:4	XLOC_009241	linc-TMEM135	NA	NA	NA	inter
CUST_37337_PI429285431	5.3315725	P	4.9084454	P	1.34083071223094	0	lncRNA	38441-1_{1..603}	n345779|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1328|NULL|-1.3161600|-0.1735997	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345779|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1328|NULL|-1.3161600|-0.1735997	chr7	 65216065	 65216667	+	NA	NA	NA	NA	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.60"	NA	inter
CUST_40262_PI429285431	8.594238	P	8.466456	P	1.09261262620972	0	lncRNA	41073-1_{1..3000}	n408193|NR_028337|lncRNA|Homosapiens||RefGeneNoncode|NR_028337||-0.5638370|-0.1405967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408193|NR_028337|lncRNA|Homosapiens||RefGeneNoncode|NR_028337||-0.5638370|-0.1405967	chr17	 75875082	 75878081	-	NA	NA	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20"	NA	inter
CUST_6032_PI429285431	1.1081338	A	1.4189303	A	0.806196541890051	0	lncRNA	5958-1_{1..681}	"transcript_id ""ENST00000577719.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577719.1"" | genecode_v17"	chr18	   976590	   977270	+	ENSG00000263551.1	ENST00000577719.1	RP11-78F17.1	RP11-78F17.1-001	NA	NA	NA	inter
CUST_36570_PI429285431	5.714303	P	5.637881	P	1.05439979867989	0	lncRNA	37765-2_{3001..3869}	n345067|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_616|NULL|-1.2763600|-0.3778482	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345067|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_616|NULL|-1.2763600|-0.3778482	chrX	 55940879	 55941747	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31926_PI429285431	4.373263	P	4.3180804	P	1.03899059863948	0	lncRNA	33654-1_{1..1140}	n338480|BC038769|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|877|NULL|-1.1357200|-0.2461570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338480|BC038769|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|877|NULL|-1.1357200|-0.2461570	chr1	204110535	204111674	+	NA	NA	NA	NA	ETNK2	"hg19_refFlat_ETNK2:range=chr1:204101312-2041209805'pad=0,hg19_refFlat_ETNK2:range=chr1:204101312-2041209805'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00chr1:204100535-204121307"	NA	inner
CUST_29433_PI429285431	2.88114	A	3.3416054	P	0.726751777478417	0	lncRNA	31189-1_{1..445}	n332818|AF059253|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064829_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064829_06|1.2073500|-0.1078893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332818|AF059253|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064829_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064829_06|1.2073500|-0.1078893	chr6	  3224717	  3225161	-	NA	NA	NA	NA	TUBB2B	NA	chr6:3224495-3227968	inner
CUST_1825_PI429285431	1.2759334	A	1.1973885	A	1.05595247124702	0	lncRNA	1814-1_{1..438}	"transcript_id ""ENST00000513793.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513793.1"" | genecode_v17"	chr4	104177316	104177753	+	ENSG00000248740.1	ENST00000513793.1	RP11-328K4.1	RP11-328K4.1-002	NA	NA	NA	inter
CUST_40482_PI429285431	1.34853	A	1.0313973	A	1.24585200455275	0	lncRNA	41247-2_{3001..4187}	n409416|NR_033818|lncRNA|Homosapiens||RefGeneNoncode|NR_033818||6.7567400|-0.2361289	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409416|NR_033818|lncRNA|Homosapiens||RefGeneNoncode|NR_033818||6.7567400|-0.2361289	chr8	 42131819	 42133005	+	NA	NA	NA	NA	POLB	NA	chr8:42196030-42200171	inter
LNCA_21_P0007568	0.99750745	A	0.92772675	A	1.04955713128052	0	lncRNA	TCONS_00020447	NA	NA	NA	NA	XLOC_009780	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009780), lincRNA [TCONS_00020447]"	chr12:58983602-58983661	hs|12q14.1	Agilent_HUMAN_G3V2	TCONS_00020447	TCONS_00020447	chr12	 58983602	 58983661	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23586_PI429285431	9.9807	P	9.951918	P	1.02015049665327	0	lncRNA	25153-1_{1..72}	lnc-TMC2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TMC2-2:1	chr20	  2637585	  2637656	+	lnc-TMC2-2	lnc-TMC2-2:1	ENSG00000226572.1	SNORD57	NOP56	NA	chr20:2633254-2639039	inter
CUST_34822_PI429285431	0.9267472	A	0.9170717	A	1.00672908478071	0	lncRNA	36253-2_{3001..3583}	n341728|AK125873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4201|NULL|-0.9025690|-0.2932284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341728|AK125873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4201|NULL|-0.9025690|-0.2932284	chr9	 97795028	 97795610	-	NA	NA	NA	NA	C9orf3	NA	chr9:97782028-97805781	inner
CUST_17743_PI429285431	2.4748344	A	2.9698315	A	0.709563104410587	0	lncRNA	19473-1_{1..456}	lnc-TTC34-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC34-3:8	chr1	  2977671	  2978126	-	lnc-TTC34-3	lnc-TTC34-3:8	XLOC_000682	linc-MMEL1-3	PRDM16	NA	chr1:2985742-2987962	inter
CUST_121_PI429285431	5.0012665	P	5.166362	P	0.891869479670172	0	lncRNA	113-1_{1..780}	"transcript_id ""ENST00000591440.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591440.1"" | genecode_v17"	chr1	   719750	   720529	+	ENSG00000237491.3	ENST00000591440.1	RP11-206L10.9	RP11-206L10.9-013	NA	NA	NA	inter
CUST_45923_PI429285431	0.91053706	A	0.90589213	A	1.00322480867719	0	lncRNA	50231-2_{3001..3779}	"gi|384871618|ref|NR_047591.1| Homo sapiens transmembrane protein 218 (TMEM218), transcript variant 17, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384871618|ref|NR_047591.1| Homo sapiens transmembrane protein 218 (TMEM218), transcript variant 17, non-coding RNA"	Chr11	124967266	124968044	-	219854	NR_047591.1	NA	NA	NA	NA	NA	inter
CUST_19618_PI429285431	2.2600691	A	2.8036911	A	0.686046371508018	0	lncRNA	21274-1_{1..2170}	lnc-OSBP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OSBP2-1:2	chr22	 31320716	 31322885	+	lnc-OSBP2-1	lnc-OSBP2-1:2	ENSG00000235989.2	MORC2-AS1	MORC2	NA	chr22:31322600-31332537	inter
CUST_160_PI429201921	0.96651363	A	0.92440486	A	1.02961770711275	0	lncRNA	138-2_{3001..4144}	TC0Y000225.hg.1	TCONS_00017600-XLOC_008271 // Rinn lincRNAs // linc-CSF2RA-2 chrY:+:900955-905100 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:+:900955-905100	NA	Affy_HUMAN_HTA2.0	TCONS_00017600-XLOC_008271	linc-CSF2RA-2	chrY	   900955	   905100	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010095	4.279142	P	4.7671056	P	0.713030848620856	0	lncRNA	TCONS_00028564	NA	NA	NA	NA	XLOC_013561	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013561), lincRNA [TCONS_00028564]"	chr20:48918429-48918488	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028564	TCONS_00028564	chr20	 48918429	 48918488	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32469_PI429285431	3.2442393	P	1.360231	A	3.69099120527533	0	lncRNA	34138-1_{1..1937}	n339071|AK021632|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1501|NULL|-1.0372300|-0.4008757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339071|AK021632|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1501|NULL|-1.0372300|-0.4008757	chr2	197851389	197853325	-	NA	NA	NA	NA	ANKRD44	NA	chr2:197851386-197863327	inner
LNCA_21_P0012320	5.849672	P	5.744734	P	1.07544817194443	0	lncRNA	ENST00000454268	NA	NA	NA	NA	XLOC_l2_009320	NA	ENST00000454268	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009320), lincRNA [TCONS_l2_00018192]"	chr22:23788821-23788880	hs|22q11.23	Agilent_HUMAN_G3V2	ENST00000454268	ENST00000454268	chr22	 23788821	 23788880	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25018_PI429285431	1.9746614	A	1.5130572	A	1.37707219802759	0	lncRNA	26558-1_{1..725}	lnc-RFESD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RFESD-1:1	chr5	 95020299	 95021023	+	lnc-RFESD-1	lnc-RFESD-1:1	ENSG00000251659.1	CTD-2154I11.1	SPATA9	NA	chr5:95010299-95018714	inter
CUST_47363_PI429285431	2.1406417	A	2.3327293	A	0.875338177815155	0	lncRNA	51413-1_{1..1315}	"gi|381388753|ref|NR_047510.1| Homo sapiens N-6 adenine-specific DNA methyltransferase 1 (putative) (N6AMT1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|381388753|ref|NR_047510.1| Homo sapiens N-6 adenine-specific DNA methyltransferase 1 (putative) (N6AMT1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_047510.1	NA	NA	NA	NA	NA	Unknown
CUST_52131_PI429285431	11.169884	P	10.718006	P	1.36781963077256	0	lncRNA	55655-1_{1..1787}	hg19_lincRNAsTranscripts_TCONS_l2_00018321 range=chr22:20383524-20387732 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018321 range=chr22:20383524-20387732 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 20383524	 20385310	-	NA	NA	NA	NA	TMEM191B	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00chr22:20373524-20380440"	NA	inter
CUST_9343_PI429285431	13.223469	P	13.367437	P	0.905026536791231	0	lncRNA	10849-1_{1..233}	lnc-ZKSCAN1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZKSCAN1-1:4	chr7	 99605744	 99605976	+	lnc-ZKSCAN1-1	lnc-ZKSCAN1-1:4	XLOC_006188	linc-ZKSCAN1-1	ZKSCAN1	NA	chr7:99613219-99615862	inter
CUST_38241_PI429285431	0.91262114	A	0.9064199	A	1.00430762327335	0	lncRNA	39302-1_{1..2162}	n381736|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001oqj.1||1.9096100|-0.2258619	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n381736|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001oqj.1||1.9096100|-0.2258619	chr11	 71116791	 71118952	-	NA	NA	NA	NA	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40"	NA	inter
CUST_51546_PI429285431	0.92046106	A	1.9781168	A	0.480412055593389	0	lncRNA	55112-1_{1..339}	hg19_lincRNAsTranscripts_TCONS_l2_00011093 range=chr17:13202466-13204519 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011093 range=chr17:13202466-13204519 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 13202466	 13202804	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25857_PI429285431	0.9174591	A	0.9055017	A	1.00832268063242	0	lncRNA	27379-1_{1..547}	lnc-AC016251.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC016251.1-1:2	chr15	 96870428	 96870974	-	lnc-AC016251.1-1	lnc-AC016251.1-1:2	ENSG00000247809.3	RP11-327J17.3	NR2F2	NA	chr15:96869157-96880586	inner
LNCA_21_P0011309	5.768371	P	5.8871055	P	0.920995172882771	0	lncRNA	TCONS_l2_00008534	NA	NA	NA	NA	XLOC_l2_004605	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004605), lincRNA [TCONS_l2_00008534]"	chr15:31125012-31125071	hs|15q13.2	Agilent_HUMAN_G3V2	TCONS_l2_00008534	TCONS_l2_00008534	chr15	 31125012	 31125071	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31854_PI429285431	1.0793964	A	0.8959216	A	1.13561577893903	0	lncRNA	33587-1_{1..3000}	n338403|AK055739|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|799|NULL|0.0307078|-0.1804855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338403|AK055739|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|799|NULL|0.0307078|-0.1804855	chr1	180914569	180917568	+	NA	NA	NA	NA	KIAA1614	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20chr1:180904569-180915239"	NA	inner
CUST_45388_PI429285431	1.1474915	A	0.9134533	A	1.17612239150881	0	lncRNA	49819-2_{3001..6000}	"gi|190570167|ref|NR_023390.1| Homo sapiens long intergenic non-protein coding RNA 476 (LINC00476), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|190570167|ref|NR_023390.1| Homo sapiens long intergenic non-protein coding RNA 476 (LINC00476), transcript variant 1, non-coding RNA"	Chr9	 98571370	 98574369	-	100128782	NR_023390.1	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
CUST_3236_PI429285431	1.026114	A	0.92163354	A	1.07510715563522	0	lncRNA	3215-1_{1..668}	"transcript_id ""ENST00000522743.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522743.1"" | genecode_v17"	chr8	 95109992	 95110659	-	ENSG00000253585.1	ENST00000522743.1	KB-1184D12.1	KB-1184D12.1-001	NA	NA	NA	inter
CUST_245_PI429201921	0.9249761	A	0.9156428	A	1.00649032202828	0	lncRNA	186-3_{6001..6367}	TC02004912.hg.1	 TCONS_l2_00016125-XLOC_l2_008517 // Broad TUCP // linc-PDCD1-3 chr2:-:242967333-242968327 // chr2 // 100 // 100 // 0 // --- // 0///TCONS_l2_00015204-XLOC_l2_008517 // Broad TUCP // linc-PDCD1-3 chr2:-:242961959-242968317 // chr2 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr2:-:242961959-242968317	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00015204-XLOC_l2_008517	linc-PDCD1-3	chr2	242961959	242968317	-	NA	NA	NA	NA	PTPRU	NA	chr1:29646132-29653325	Unknown
CUST_34274_PI429285431	1.816771	A	0.9205874	A	1.86113615191392	0	lncRNA	35773-3_{6001..8419}	n341130|BX537510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3596|NULL|-0.7089240|-0.2577063	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341130|BX537510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3596|NULL|-0.7089240|-0.2577063	chr11	115515280	115517698	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40850_PI429285431	1.6197287	A	1.2801994	A	1.26534369004417	0	lncRNA	41553-1_{1..2728}	n410622|NR_037861_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037861_7||-0.1512980|-0.2721826	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410622|NR_037861_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037861_7||-0.1512980|-0.2721826	chr6	  3501598	  3504325	+	NA	NA	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70"	NA	inter
CUST_50938_PI429285431	8.097841	P	8.154001	P	0.961820779411721	0	lncRNA	54580-1_{1..546}	hg19_lincRNAsTranscripts_TCONS_00079053_HOTAIR range=chr12:54350159-54360820 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00079053_HOTAIR range=chr12:54350159-54360820 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 54350159	 54350704	-	NA	NA	NA	NA	HOXC11	"hg19_refFlat_HOXC12:range=chr12:54348714-543503505'pad=0,hg19_refFlat_HOXC12:range=chr12:54348714-543503505'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80chr12:54366910-54370203"	NA	inter
CUST_24666_PI429285431	0.918647	A	0.91529727	A	1.00232455349996	0	lncRNA	26214-1_{1..3000}	lnc-AF131216.6.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AF131216.6.1-1:1	chr8	 11182825	 11185824	-	lnc-AF131216.6.1-1	lnc-AF131216.6.1-1:1	ENSG00000246477.2	AF131216.6	MTMR9	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MTMR9:range=chr8:11142398-111802975'pad=0,hg19_refFlat_MTMR9:range=chr8:11142398-111802975'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50chr8:11172825-11185655"	NA	inner
CUST_6646_PI429285431	1.0968785	A	1.3844283	A	0.8192923221248	0	lncRNA	6592-1_{1..558}	"transcript_id ""ENST00000427835.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427835.2"" | genecode_v17"	chr20	 11790635	 11791192	-	ENSG00000228422.3	ENST00000427835.2	LINC00687	LINC00687-001	NA	NA	NA	inter
CUST_5661_PI429285431	0.91127074	A	0.9113953	A	0.999913665314243	0	lncRNA	5587-1_{1..424}	"transcript_id ""ENST00000563841.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563841.1"" | genecode_v17"	chr16	 82203901	 82204324	+	ENSG00000261029.1	ENST00000563841.1	CTD-2588J6.2	CTD-2588J6.2-001	MPHOSPH6	NA	chr16:82193901-82203829	inter
CUST_51177_PI429285431	12.655351	P	12.704208	P	0.966701911855076	0	lncRNA	54798-1_{1..758}	hg19_lincRNAsTranscripts_TCONS_l2_00008156 range=chr14:77352715-77371404 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008156 range=chr14:77352715-77371404 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr14	 77352715	 77353472	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14976_PI429285431	0.92356646	A	0.9098875	A	1.0095266246883	0	lncRNA	16639-1_{1..2311}	lnc-C6orf123-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C6orf123-1:1	chr6	168226083	168228393	-	lnc-C6orf123-1	lnc-C6orf123-1:1	XLOC_005925	linc-TCP10-5	MLLT4	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90chr6:168227671-168237476"	NA	inter
LNCA_21_P0013099	6.89402	P	7.0491924	P	0.898025053758545	0	lncRNA	TCONS_l2_00024930	NA	NA	NA	NA	XLOC_l2_013125	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013125), lincRNA [TCONS_l2_00024930]"	chr6:134851977-134851918	hs|6q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00024930	TCONS_l2_00024930	chr6	134851918	134851977	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40070_PI429285431	1.257273	A	0.93132704	A	1.25348606688931	0	lncRNA	40920-3_{6001..7033}	n407319|NR_026786|lncRNA|Homosapiens||RefGeneNoncode|NR_026786||3.9947600|-0.2471336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407319|NR_026786|lncRNA|Homosapiens||RefGeneNoncode|NR_026786||3.9947600|-0.2471336	chr3	197693070	197694102	+	NA	NA	NA	NA	IQCG	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20chr3:197677070-197686886"	NA	inner
CUST_17387_PI429285431	4.91032	P	5.0569005	P	0.903389155165072	0	lncRNA	19110-1_{1..776}	lnc-GYPA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GYPA-1:1	chr4	145134222	145134997	-	lnc-GYPA-1	lnc-GYPA-1:1	XLOC_004108	linc-GYPA-2	NA	NA	NA	inter
CUST_5233_PI429285431	1.1062574	A	1.2432517	A	0.909411844824295	0	lncRNA	5174-1_{1..546}	"transcript_id ""ENST00000561834.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561834.1"" | genecode_v17"	chr15	 72110831	 72111376	+	ENSG00000260037.1	ENST00000561834.1	CTD-2524L6.3	CTD-2524L6.3-001	MYO9A	NA	chr15:72118351-72125725	inter
CUST_9082_PI429285431	0.90891325	A	1.6837444	A	0.584457023901429	0	lncRNA	10603-1_{1..1378}	lnc-S100A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-S100A1-1:1	chr1	153523719	153525096	+	lnc-S100A1-1	lnc-S100A1-1:1	ENSG00000247613	ENST00000499546	S100A4	"hg19_refFlat_S100A3:range=chr1:153520158-1535209615'pad=0,hg19_refFlat_S100A3:range=chr1:153520158-1535209615'pad=0 3'pad=0 strand=- repeatMasking=none,-96.50chr1:153516095-153518282"	NA	inter
CUST_16986_PI429285431	0.92087543	A	0.91776365	A	1.00215924936212	0	lncRNA	18695-1_{1..1198}	lnc-CBLB-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLB-3:4	chr3	106146751	106147948	-	lnc-CBLB-3	lnc-CBLB-3:4	XLOC_003199	linc-CBLB-10	NA	NA	NA	inter
CUST_8070_PI429285431	2.671547	A	1.4106641	A	2.3964235229948	0	lncRNA	9677-1_{1..1705}	lnc-RPLP1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-RPLP1-1:10	chr15	 69863079	 69864783	+	lnc-RPLP1-1	lnc-RPLP1-1:10	ENSG00000245750	XLOC_011294	NA	NA	NA	inter
CUST_10809_PI429285431	5.4729195	P	5.597674	P	0.917160100889604	0	lncRNA	12344-3_{6001..6231}	lnc-ARFGEF2-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ARFGEF2-2:7	chr20	 47138105	 47138335	+	lnc-ARFGEF2-2	lnc-ARFGEF2-2:7	XLOC_013553	linc-ARFGEF2-2	NA	NA	NA	inter
CUST_9115_PI429285431	0.91930115	A	0.9695813	A	0.96574877661293	0	lncRNA	10634-2_{3001..3855}	lnc-XRN2-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-XRN2-2:8	chr20	 21227883	 21228737	+	lnc-XRN2-2	lnc-XRN2-2:8	ENSG00000088970	PLK1S1	PLK1S1	NA	chr20:21214883-21227260	inner
CUST_11371_PI429285431	1.0555465	A	0.9192046	A	1.09911466262428	0	lncRNA	12935-1_{1..982}	lnc-TREM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TREM2-1:1	chr6	 41144627	 41145608	-	lnc-TREM2-1	lnc-TREM2-1:1	XLOC_005716	linc-TREM2	NA	NA	NA	inter
CUST_22815_PI429285431	0.9015348	A	0.8967533	A	1.0033197815532	0	lncRNA	24395-1_{1..472}	lnc-FAM192A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM192A-1:1	chr16	 57125839	 57126310	-	lnc-FAM192A-1	lnc-FAM192A-1:1	ENSG00000260148.1	RP11-407G23.1	CPNE2	NA	chr16:57126455-57136215	inter
CUST_23556_PI429285431	4.395577	P	4.4933167	P	0.934495939235088	0	lncRNA	25123-1_{1..353}	lnc-TPR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TPR-1:1	chr1	186146177	186146529	-	lnc-TPR-1	lnc-TPR-1:1	ENSG00000224691.1	GS1-174L6.4	HMCN1	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00chr1:186136177-186156434"	NA	inter
CUST_13367_PI429285431	3.291789	A	4.661885	P	0.38686550467464	0	lncRNA	15004-2_{3001..6000}	lnc-PCYOX1L-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCYOX1L-2:2	chr5	148803044	148806043	+	lnc-PCYOX1L-2	lnc-PCYOX1L-2:2	XLOC_004598	linc-ARHGEF37-2	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.01;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60"	NA	inter
CUST_13418_PI429285431	0.91207016	A	0.9055538	A	1.00452701266266	0	lncRNA	15057-1_{1..690}	lnc-SLC24A5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC24A5-1:2	chr15	 48341034	 48341723	+	lnc-SLC24A5-1	lnc-SLC24A5-1:2	XLOC_011238	linc-SLC24A5	NA	NA	NA	inter
CUST_40342_PI429285431	1.5900635	A	3.400372	P	0.285129951426481	0	lncRNA	41147-1_{1..3000}	n409061|NR_033118|lncRNA|Homosapiens||RefGeneNoncode|NR_033118||0.5404500|-0.2717276	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409061|NR_033118|lncRNA|Homosapiens||RefGeneNoncode|NR_033118||0.5404500|-0.2717276	chr3	147103834	147106833	-	NA	NA	NA	NA	ZIC4	NA	chr3:147103835-147120217	inner
CUST_17801_PI429285431	0.89534056	A	0.8956071	A	0.999815265615992	0	lncRNA	19534-1_{1..1778}	lnc-SYNGR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYNGR1-1:1	chr22	 39689808	 39691585	+	lnc-SYNGR1-1	lnc-SYNGR1-1:1	XLOC_014247	linc-SYNGR1-1	NA	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90"	NA	inter
CUST_28519_PI429285431	2.0280812	A	3.030337	A	0.499218810188949	0	lncRNA	30188-1_{1..831}	n325864|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050847|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050847|-0.6949460|-0.1977986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325864|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050847|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050847|-0.6949460|-0.1977986	chr10	125105955	125106785	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12147_PI429285431	1.6916969	A	1.7295395	A	0.974110539536693	0	lncRNA	13746-1_{1..2341}	lnc-MSX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MSX1-2:1	chr4	  4787237	  4789577	+	lnc-MSX1-2	lnc-MSX1-2:1	XLOC_003433	linc-MSX1-1	NA	NA	NA	inter
LNCA_21_P0013570	1.8983364	A	0.91805005	A	1.97285694809277	0	lncRNA	TCONS_l2_00028759	NA	NA	NA	NA	XLOC_l2_014814	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014814), lincRNA [TCONS_l2_00028759]"	chr9:66333443-66333502	hs|9q13	Agilent_HUMAN_G3V2	TCONS_l2_00028759	TCONS_l2_00028759	chr9	 66333443	 66333502	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35140_PI429285431	0.95748955	A	1.2869723	A	0.795821758888908	0	lncRNA	36542-1_{1..2078}	n342110|BC042098|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4592|NULL|-0.7153040|-0.2376470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342110|BC042098|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4592|NULL|-0.7153040|-0.2376470	chr6	114290864	114292941	+	NA	NA	NA	NA	HDAC2	NA	chr6:114280864-114292359	inter
CUST_3220_PI429285431	0.91450465	A	0.91171604	A	1.00193478644775	0	lncRNA	3199-1_{1..772}	"transcript_id ""ENST00000523283.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523283.1"" | genecode_v17"	chr8	 91233716	 91234487	+	ENSG00000253394.1	ENST00000523283.1	LINC00534	LINC00534-002	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80"	NA	inter
CUST_32290_PI429285431	3.0209122	A	3.4268923	P	0.754723394562903	0	lncRNA	33974-1_{1..1673}	n338867|AL080233|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1292|NULL|0.4419690|-0.1762059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338867|AL080233|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1292|NULL|0.4419690|-0.1762059	chr2	 65816699	 65818371	-	NA	NA	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50"	NA	inter
CUST_42920_PI429285431	3.8426485	P	2.9449234	A	1.86312581331516	0	lncRNA	46024-1_{1..134}	ENST00000365509 ncrna:snoRNA chromosome:GRCh37:3:108293412:108293545:1 gene:ENSG00000202379 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365509 ncrna:snoRNA chromosome:GRCh37:3:108293412:108293545:1 gene:ENSG00000202379 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	108293412	108293545	+	ENSG00000202379	ENST00000365509	NA	NA	KIAA1524	NA	chr3:108283412-108303545	inner
CUST_29959_PI429285431	1.3250629	A	0.930936	A	1.31414721495046	0	lncRNA	31725-1_{1..479}	n334165|M97723|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196986|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196986|0.1808580|-0.3296174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334165|M97723|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196986|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196986|0.1808580|-0.3296174	chr7	142448053	142448531	+	NA	NA	NA	NA	PRSS1	NA	chr7:142457319-142460927	inner
CUST_12712_PI429285431	4.8147383	P	4.8730354	P	0.960397065151947	0	lncRNA	14330-1_{1..490}	lnc-OR4M2-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR4M2-7:2	chr15	 20530991	 20531480	+	lnc-OR4M2-7	lnc-OR4M2-7:2	XLOC_011157	linc-OR4M2-5	NA	NA	NA	inter
LNCA_21_P0007164	0.92878807	A	0.9245771	A	1.00292308589133	0	lncRNA	BC038579	NA	BC038579	NA	Hs.385785	XLOC_009601	NA	NA	THC2611607	NA	"BROAD Institute lincRNA (XLOC_009601), lincRNA [TCONS_00019178]"	chr11:129482079-129482020	hs|11q24.3	Agilent_HUMAN_G3V2	BC038579	BC038579	chr11	129482020	129482079	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34006_PI429285431	4.419397	P	5.2004104	P	0.58195786185112	0	lncRNA	35543-1_{1..2736}	n340820|CR598210|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3284|NULL|3.4355300|-0.1619434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340820|CR598210|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3284|NULL|3.4355300|-0.1619434	chr6	  3751344	  3754079	+	NA	NA	NA	NA	C6orf145	"hg19_refFlat_PXDC1:range=chr6:3723853-37517655'pad=0,hg19_refFlat_PXDC1:range=chr6:3723853-37517655'pad=0 3'pad=0 strand=- repeatMasking=none,-104.40chr6:3741344-3752246"	NA	inner
LNCA_21_P0007876	0.9296518	A	0.9261193	A	1.00245154254346	0	lncRNA	TCONS_00021307	NA	NA	NA	NA	XLOC_010061	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010061), lincRNA [TCONS_00021307]"	chr12:46824178-46824119	hs|12q13.11	Agilent_HUMAN_G3V2	TCONS_00021307	TCONS_00021307	chr12	 46824119	 46824178	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6180_PI429285431	0.91743803	A	0.91935074	A	0.998675088926963	0	lncRNA	6105-1_{1..535}	"transcript_id ""ENST00000583982.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583982.1"" | genecode_v17"	chr18	 48918368	 48918902	+	ENSG00000227115.2	ENST00000583982.1	RP11-267C16.1	RP11-267C16.1-004	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00"	NA	inter
CUST_38775_PI429285431	0.91787946	A	0.91712683	A	1.00052181946294	0	lncRNA	39767-1_{1..2179}	n384404|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003gdg.1||-0.0316882|-0.1359983	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384404|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003gdg.1||-0.0316882|-0.1359983	chr4	  1575787	  1577965	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1595_PI429285431	3.3926852	P	2.4272041	A	1.95271459079411	0	lncRNA	1581-1_{1..423}	"transcript_id ""ENST00000434896.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434896.1"" | genecode_v17"	chr3	186158777	186159199	+	ENSG00000234548.1	ENST00000434896.1	RP11-78H24.1	RP11-78H24.1-004	NA	NA	NA	inter
CUST_1954_PI429285431	0.91759294	A	0.91215736	A	1.00377476349336	0	lncRNA	1947-1_{1..519}	"transcript_id ""ENST00000508265.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508265.1"" | genecode_v17"	chr4	156436879	156437397	+	ENSG00000251244.1	ENST00000508265.1	RP13-487K5.1	RP13-487K5.1-001	NA	NA	NA	inter
CUST_34125_PI429285431	3.3655393	P	3.6682932	P	0.810703400731451	0	lncRNA	35646-2_{3001..3808}	n340960|AK128569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3425|NULL|-0.8796990|-0.2421562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340960|AK128569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3425|NULL|-0.8796990|-0.2421562	chr11	  7451496	  7452303	-	NA	NA	NA	NA	SYT9	NA	chr11:7438496-7490276	inner
CUST_21315_PI429285431	0.93077874	A	0.9163988	A	1.01001725500199	0	lncRNA	22938-1_{1..242}	lnc-TYR-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TYR-1:2	chr11	 88245420	 88245661	+	lnc-TYR-1	lnc-TYR-1:2	ENSG00000255082.1	GRM5-AS1	GRM5	NA	chr11:88237744-88255529	inner
CUST_36177_PI429285431	8.987833	P	8.928118	P	1.04225984525295	0	lncRNA	37447-1_{1..2528}	n344735|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_284|NULL|-1.3228100|-0.2429238	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344735|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_284|NULL|-1.3228100|-0.2429238	chr2	 16201121	 16203648	-	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-23.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-19.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10"	NA	inter
CUST_352_PI429285431	1.7903466	A	1.649925	A	1.10222717360201	0	lncRNA	345-1_{1..428}	"transcript_id ""ENST00000451023.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451023.1"" | genecode_v17"	chr1	108614993	108615420	+	ENSG00000226822.1	ENST00000451023.1	RP11-356N1.2	RP11-356N1.2-002	NA	NA	NA	inter
CUST_2403_PI429285431	1.4240158	A	1.6904646	A	0.831363433903305	0	lncRNA	2395-1_{1..402}	"transcript_id ""ENST00000522134.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522134.1"" | genecode_v17"	chr5	153864833	153865234	-	ENSG00000254293.1	ENST00000522134.1	CTB-158E9.1	CTB-158E9.1-002	HAND1	NA	chr5:153854833-153857824	inter
CUST_50236_PI429285431	4.5990324	P	4.2066545	P	1.31255502064841	0	lncRNA	53960-1_{1..1600}	hg19_lincRNAsTranscripts_TCONS_l2_00029334 range=chr9:67329548-67340129 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029334 range=chr9:67329548-67340129 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 67329548	 67331147	-	NA	NA	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60"	NA	inter
CUST_35354_PI429285431	0.90865815	A	0.9721798	A	0.956925390333811	0	lncRNA	36765-1_{1..3000}	n342398|BC018945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4890|NULL|-1.0457800|-0.2375809	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342398|BC018945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4890|NULL|-1.0457800|-0.2375809	chr2	 23724794	 23727793	-	NA	NA	NA	NA	KLHL29	NA	chr2:23714794-23737929	inner
CUST_33125_PI429285431	12.656834	P	12.289416	P	1.29004196749593	0	lncRNA	34722-1_{1..879}	n339814|AF143873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2261|NULL|-1.1149800|-0.2260592	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339814|AF143873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2261|NULL|-1.1149800|-0.2260592	chr18	 22913211	 22914089	-	NA	NA	NA	NA	ZNF521	NA	chr18:22903211-22924068	inner
CUST_13352_PI429285431	5.0215282	P	5.4083037	P	0.764837147169494	0	lncRNA	14989-1_{1..693}	lnc-AC092327.1-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092327.1-2:8	chr16	 86256540	 86257232	-	lnc-AC092327.1-2	lnc-AC092327.1-2:8	XLOC_012044	linc-COX4NB-7	NA	NA	NA	inter
LNCA_21_P0007154	2.758154	A	2.1554346	A	1.51857630240424	0	lncRNA	ENST00000449749	NA	NA	NA	NA	XLOC_009355	NA	ENST00000449749	NA	NA	"BROAD Institute lincRNA (XLOC_009355), lincRNA [TCONS_00019163]"	chr11:1798227-1798168	hs|11p15.5	Agilent_HUMAN_G3V2	ENST00000449749	ENST00000449749	chr11	  1798168	  1798227	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1550_PI429285431	0.92250174	A	0.9225193	A	0.999987828409584	0	lncRNA	1537-1_{1..436}	"transcript_id ""ENST00000493529.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000493529.1"" | genecode_v17"	chr3	167632847	167633282	+	ENSG00000244227.1	ENST00000493529.1	RP11-298O21.5	RP11-298O21.5-006	NA	NA	NA	inter
CUST_45313_PI429285431	4.4063163	P	4.3245726	P	1.05829636799048	0	lncRNA	49755-1_{1..1669}	"gi|383792201|ref|NR_047536.1| Homo sapiens CDKN2B antisense RNA 1 (CDKN2B-AS1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|383792201|ref|NR_047536.1| Homo sapiens CDKN2B antisense RNA 1 (CDKN2B-AS1), transcript variant 6, non-coding RNA"	Chr9	 21994790	 21996458	+	100048912	NR_047536.1	NA	NA	NA	NA	NA	inter
CUST_845_PI429285431	7.819059	P	7.396913	P	1.33991919470374	0	lncRNA	839-1_{1..551}	"transcript_id ""ENST00000418746.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418746.1"" | genecode_v17"	chr2	 38067181	 38067731	-	ENSG00000237803.1	ENST00000418746.1	LINC00211	LINC00211-001	NA	NA	NA	inter
CUST_14386_PI429285431	0.917032	A	0.9131588	A	1.00268830468771	0	lncRNA	16047-1_{1..651}	lnc-SERPINB3-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERPINB3-3:2	chr18	 62659870	 62660520	-	lnc-SERPINB3-3	lnc-SERPINB3-3:2	XLOC_012866	linc-SERPINB3-4	NA	NA	NA	inter
CUST_42955_PI429285431	14.098987	P	13.998088	P	1.07244153484736	0	lncRNA	46081-1_{1..132}	ENST00000363450 ncrna:snoRNA chromosome:GRCh37:3:186505089:186505220:1 gene:ENSG00000200320 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363450 ncrna:snoRNA chromosome:GRCh37:3:186505089:186505220:1 gene:ENSG00000200320 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	186505089	186505220	+	ENSG00000200320	ENST00000363450	NA	NA	RFC4	NA	chr3:186507681-186515220	inter
CUST_27379_PI429285431	1.0430175	A	0.9162373	A	1.09185418499328	0	lncRNA	28941-1_{1..2141}	n324541|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000258150|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000258150|0.1183730|-0.3626760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324541|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000258150|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000258150|0.1183730|-0.3626760	chr6	 31517422	 31519562	+	NA	NA	NA	NA	DDX39B	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF680:range=chr7:63986777-640233325'pad=0,hg19_refFlat_ZNF680:range=chr7:63986777-640233325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70chr6:31507422-31510252"	NA	inner
CUST_35696_PI429285431	4.967166	P	5.12177	P	0.898378931738024	0	lncRNA	37115-1_{1..2125}	n342858|CR608042|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5362|NULL|-0.2394530|-0.2953346	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342858|CR608042|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5362|NULL|-0.2394530|-0.2953346	chr9	 37072357	 37074481	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-62.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70"	NA	inter
LNCA_19_P00318780	5.1053085	P	5.0618258	P	1.03059871586923	0	lncRNA	ENST00000513329	NA	NA	NA	NA	XLOC_004558	NA	ENST00000513329	NA	NA	"BROAD Institute lincRNA (XLOC_004558), lincRNA [TCONS_00009513]"	chr5:133828069-133828128	hs|5q31.1	Agilent_HUMAN_G3V2	ENST00000513329	ENST00000513329	chr5	133828069	133828128	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4864_PI429285431	1.3909081	A	1.0430175	A	1.27269842251153	0	lncRNA	4807-1_{1..283}	"transcript_id ""ENST00000553983.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553983.1"" | genecode_v17"	chr14	 64065592	 64065874	+	ENSG00000258800.1	ENST00000553983.1	CTD-2302E22.2	CTD-2302E22.2-001	WDR89	"hg19_refFlat_WDR89:range=chr14:64065497-640666605'pad=0,hg19_refFlat_WDR89:range=chr14:64065497-640666605'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80chr14:64060570-64075966"	NA	inner
CUST_946_PI429285431	0.920251	A	0.9238341	A	0.997519465959	0	lncRNA	936-1_{1..769}	"transcript_id ""ENST00000450290.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450290.1"" | genecode_v17"	chr2	 80926513	 80927281	-	ENSG00000230975.1	ENST00000450290.1	AC084193.1	AC084193.1-001	NA	NA	NA	inter
CUST_1137_PI429285431	5.079546	P	5.298355	P	0.85927450772424	0	lncRNA	1126-1_{1..554}	"transcript_id ""ENST00000423428.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423428.1"" | genecode_v17"	chr2	151485506	151486059	+	ENSG00000224048.1	ENST00000423428.1	AC104777.4	AC104777.4-002	NA	NA	NA	inter
CUST_34856_PI429285431	2.0484693	A	1.8921125	A	1.11446924160374	0	lncRNA	36282-1_{1..2351}	n341762|BC006310|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4237|NULL|0.0127288|-0.2521796	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341762|BC006310|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4237|NULL|0.0127288|-0.2521796	chr9	116933575	116935925	+	NA	NA	NA	NA	COL27A1	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20chr9:116923575-116945890"	NA	inner
CUST_28799_PI429285431	6.631815	P	6.5964136	P	1.02484192439816	0	lncRNA	30507-1_{1..487}	n326206|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092591|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092591|-1.1465200|-0.3883226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326206|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092591|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092591|-1.1465200|-0.3883226	chr1	221421108	221421594	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_700_PI429285431	0.9179868	A	0.91411394	A	1.00268806838414	0	lncRNA	693-1_{1..815}	"transcript_id ""ENST00000587628.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587628.1"" | genecode_v17"	chr2	  6774775	  6775589	-	ENSG00000236172.2	ENST00000587628.1	AC097517.2	AC097517.2-039	NA	NA	NA	inter
CUST_16878_PI429285431	1.1461502	A	1.5333045	A	0.764636354714136	0	lncRNA	18585-1_{1..366}	lnc-PDZRN4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDZRN4-1:2	chr12	 42159122	 42159487	+	lnc-PDZRN4-1	lnc-PDZRN4-1:2	XLOC_009714	linc-PPHLN1	NA	NA	NA	inter
CUST_26573_PI429285431	3.743319	P	4.006494	P	0.833252126915356	0	lncRNA	28077-1_{1..341}	lnc-NEO1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NEO1-1:1	chr15	 73634654	 73634994	+	lnc-NEO1-1	lnc-NEO1-1:1	ENSG00000259650.1	RP11-272D12.1	HCN4	NA	chr15:73624654-73644698	inner
CUST_52095_PI429285431	7.129366	P	7.265732	P	0.909807983913963	0	lncRNA	55621-1_{1..2178}	hg19_lincRNAsTranscripts_TCONS_l2_00017863 range=chr22:17175465-17182301 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017863 range=chr22:17175465-17182301 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 17175465	 17177642	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33591_PI429285431	1.2234746	A	0.973627	A	1.18908149899443	0	lncRNA	35156-1_{1..337}	n340345|AF009279|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2806|NULL|-0.8402760|-0.3041727	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340345|AF009279|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2806|NULL|-0.8402760|-0.3041727	chr5	  9157256	  9157592	-	NA	NA	NA	NA	SEMA5A	NA	chr5:9147256-9167593	inner
CUST_16356_PI429285431	1.5620973	A	0.92412066	A	1.55614515593187	0	lncRNA	18056-1_{1..3000}	lnc-FANCI-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-FANCI-2:7	chr15	 89938259	 89941258	+	lnc-FANCI-2	lnc-FANCI-2:7	XLOC_011345	linc-C15orf42-2	NA	NA	NA	inter
LNCA_21_P0008070	1.0473374	A	1.029349	A	1.01254666592891	0	lncRNA	TCONS_00021809	NA	NA	NA	NA	XLOC_010409	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010409), lincRNA [TCONS_00021809]"	chr13:63167439-63167498	hs|13q21.31	Agilent_HUMAN_G3V2	TCONS_00021809	TCONS_00021809	chr13	 63167439	 63167498	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20274_PI429285431	4.574352	P	4.500525	P	1.05250493657843	0	lncRNA	21917-1_{1..632}	lnc-RP11-334E6.3.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RP11-334E6.3.1-2:1	chr11	119289377	119290008	+	lnc-RP11-334E6.3.1-2	lnc-RP11-334E6.3.1-2:1	ENSG00000263873.1	RP11-334E6.12	THY1	NA	chr11:119288655-119294246	inter
CUST_32481_PI429285431	1.0358778	A	0.933845	A	1.07328468748764	0	lncRNA	34150-1_{1..2404}	n339084|AK095543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1514|NULL|-1.0360100|-0.4003844	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339084|AK095543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1514|NULL|-1.0360100|-0.4003844	chr16	 14244689	 14247092	+	NA	NA	NA	NA	MKL2	NA	chr16:14234689-14257092	inner
CUST_16320_PI429285431	6.3270125	P	6.3451624	P	0.987498252318531	0	lncRNA	18025-2_{3001..6000}	lnc-NAP1L2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NAP1L2-1:7	chrX	 73064217	 73067216	-	lnc-NAP1L2-1	lnc-NAP1L2-1:7	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70"	NA	inter
CUST_18795_PI429285431	4.523653	P	4.7813144	P	0.836442689672842	0	lncRNA	20490-1_{1..2464}	lnc-RP11-566K11.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-566K11.2.1-1:1	chr16	 89979640	 89982103	+	lnc-RP11-566K11.2.1-1	lnc-RP11-566K11.2.1-1:1	ENSG00000255773	RP11-566K11.1	TUBB3	NA	chr16:89988417-89991576	inter
CUST_36697_PI429285431	0.9917928	A	0.92252344	A	1.04918519859159	0	lncRNA	37878-2_{3001..4359}	n345185|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_734|NULL|-1.3266300|-0.3364153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345185|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_734|NULL|-1.3266300|-0.3364153	chr12	 79948573	 79949931	-	NA	NA	NA	NA	PAWR	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NOP56:range=chr20:2633307-26389405'pad=0,hg19_refFlat_NOP56:range=chr20:2633307-26389405'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20chr12:79985745-79991518"	NA	inter
CUST_31878_PI429285431	0.924764	A	0.93069726	A	0.995895822809798	0	lncRNA	33611-1_{1..2367}	n338434|BC032017|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|831|NULL|-1.0087200|-0.2992364	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338434|BC032017|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|831|NULL|-1.0087200|-0.2992364	chr14	 88624583	 88626949	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2303_PI429285431	0.9209497	A	0.9128881	A	1.00560351660634	0	lncRNA	2295-2_{3001..5471}	"transcript_id ""ENST00000512693.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512693.1"" | genecode_v17"	chr5	108575821	108578291	-	ENSG00000249476.1	ENST00000512693.1	CTD-2587M2.1	CTD-2587M2.1-001	PJA2	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40chr5:108670410-108672070"	NA	inter
CUST_3277_PI429285431	2.3942227	A	1.4398305	A	1.93776309225623	0	lncRNA	3255-1_{1..570}	"transcript_id ""ENST00000524129.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524129.1"" | genecode_v17"	chr8	120227412	120227981	-	ENSG00000253972.1	ENST00000524129.1	RP11-4K16.2	RP11-4K16.2-004	MAL2	NA	chr8:120220610-120257913	inner
CUST_28511_PI429285431	4.508083	P	4.5494566	P	0.971729316579863	0	lncRNA	30180-1_{1..200}	n325856|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051007|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051007|-1.1312700|-0.2637473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325856|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051007|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051007|-1.1312700|-0.2637473	chr10	130585755	130585954	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14094_PI429285431	1.009444	A	1.014075	A	0.996795181835081	0	lncRNA	15740-1_{1..265}	lnc-FAM70A-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM70A-1:9	chrX	119270952	119271216	-	lnc-FAM70A-1	lnc-FAM70A-1:9	XLOC_008223	linc-RHOXF1-2	NA	NA	NA	inter
CUST_17352_PI429285431	0.93056655	A	0.9274198	A	1.00218354135225	0	lncRNA	19072-1_{1..755}	lnc-TRAF5-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRAF5-6:2	chr1	211859812	211860566	+	lnc-TRAF5-6	lnc-TRAF5-6:2	XLOC_000550	linc-DTL-2	NA	NA	NA	inter
CUST_24821_PI429285431	7.5121436	P	7.4665174	P	1.03213107730841	0	lncRNA	26361-1_{1..531}	lnc-DDX31-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DDX31-1:1	chr9	135645369	135645899	-	lnc-DDX31-1	lnc-DDX31-1:1	ENSG00000224992.1	RP11-295G24.5	AK8	NA	chr9:135635369-135655599	inner
CUST_10362_PI429285431	0.9196872	A	0.92503166	A	0.996302355804659	0	lncRNA	11887-1_{1..382}	lnc-CHD9-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD9-5:5	chr16	 52306531	 52306912	+	lnc-CHD9-5	lnc-CHD9-5:5	XLOC_011724	linc-CHD9-4	NA	NA	NA	inter
CUST_9407_PI429285431	0.91847205	A	0.9171535	A	1.00091436699378	0	lncRNA	10910-1_{1..885}	lnc-WRB-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRB-2:2	chr21	 40694728	 40695612	+	lnc-WRB-2	lnc-WRB-2:2	XLOC_013942	linc-WRB-2	BRWD1	NA	chr21:40684728-40685712	inter
CUST_18903_PI429285431	1.9964657	A	0.9366731	A	2.08463181612762	0	lncRNA	20594-2_{3001..3653}	lnc-APBA2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-APBA2-1:2	chr15	 29004803	 29005455	+	lnc-APBA2-1	lnc-APBA2-1:2	ENSG00000248334	AC055876.5	NA	NA	NA	inter
CUST_9574_PI429285431	1.863134	A	1.5181837	A	1.27010722733431	0	lncRNA	11090-1_{1..1119}	lnc-LYPLAL1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYPLAL1-1:4	chr1	219500148	219501266	+	lnc-LYPLAL1-1	lnc-LYPLAL1-1:4	XLOC_000566	linc-IARS2-3	NA	NA	NA	inter
CUST_8299_PI429285431	4.5240245	P	4.611426	P	0.941216488864612	0	lncRNA	9884-1_{1..808}	lnc-MARCKS-5:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MARCKS-5:7	chr6	114316764	114317571	+	lnc-MARCKS-5	lnc-MARCKS-5:7	ENSG00000228624	RP3-399L15.3	NA	NA	NA	inter
CUST_25002_PI429285431	0.9155515	A	0.92188334	A	0.995620720090192	0	lncRNA	26543-1_{1..3000}	lnc-SNURF-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNURF-3:4	chr15	 25354702	 25357701	+	lnc-SNURF-3	lnc-SNURF-3:4	ENSG00000224078.4	SNHG14	SNRPN	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40chr15:25344702-25369074"	NA	inter
CUST_35938_PI429285431	2.2119927	A	2.171639	A	1.02836591627335	0	lncRNA	37301-1_{1..2555}	n344576|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_124|NULL|-1.3154600|-0.1689939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344576|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_124|NULL|-1.3154600|-0.1689939	chr3	128578559	128581113	+	NA	NA	NA	NA	ACAD9	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_IFT122:range=chr3:129159174-1292391085'pad=0,hg19_refFlat_IFT122:range=chr3:129159174-1292391085'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50chr3:128598333-128600947"	NA	inter
CUST_14346_PI429285431	0.92231315	A	0.9103645	A	1.00831656513576	0	lncRNA	16004-1_{1..1827}	lnc-THBD-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THBD-1:3	chr20	 23011181	 23013007	-	lnc-THBD-1	lnc-THBD-1:3	XLOC_013687	linc-FOXA2-1	SSTR4	NA	chr20:23001181-23017314	inter
CUST_25623_PI429285431	0.9450923	A	0.924642	A	1.01427601045242	0	lncRNA	27153-1_{1..497}	lnc-H2AFY2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-H2AFY2-1:1	chr10	 71968880	 71969376	+	lnc-H2AFY2-1	lnc-H2AFY2-1:1	ENSG00000230620.1	RP11-367H5.7	PPA1	"hg19_refFlat_PPA1:range=chr10:71962911-719930835'pad=0,hg19_refFlat_PPA1:range=chr10:71962911-719930835'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90chr10:71958880-71979331"	NA	inner
CUST_27541_PI429285431	11.167054	P	11.034797	P	1.0960069904566	0	lncRNA	29116-1_{1..1859}	n324725|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319604|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319604|0.0464074|-0.2214945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324725|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319604|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319604|0.0464074|-0.2214945	chr22	 18962131	 18963989	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20"	NA	inter
CUST_29498_PI429285431	2.3214738	A	3.2909603	P	0.510687800167534	0	lncRNA	31256-1_{1..448}	n332926|AF086475|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067354|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067354|-0.8691240|-0.1123353	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332926|AF086475|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067354|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067354|-0.8691240|-0.1123353	chr17	 79525637	 79526084	+	NA	NA	NA	NA	NPLOC4	NA	chr17:79523913-79536085	inner
CUST_5628_PI429285431	0.92229325	A	0.91845334	A	1.00266516805273	0	lncRNA	5556-1_{1..419}	"transcript_id ""ENST00000569938.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569938.1"" | genecode_v17"	chr16	 79539500	 79539918	+	ENSG00000261472.1	ENST00000569938.1	RP11-467I17.1	RP11-467I17.1-001	NA	NA	NA	inter
CUST_7150_PI429285431	0.9191131	A	0.9178799	A	1.00085515453939	0	lncRNA	7087-1_{1..745}	"transcript_id ""ENST00000417910.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417910.1"" | genecode_v17"	chrY	 24246961	 24247705	-	ENSG00000236951.1	ENST00000417910.1	AC007359.6	AC007359.6-002	PRY2	NA	chrY:24236961-24242154	inter
LNCA_21_P0012789	4.731695	P	4.8068795	P	0.949220721474531	0	lncRNA	ENST00000509983	NA	NA	NA	NA	XLOC_l2_011227	NA	ENST00000509983	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011227), lincRNA [TCONS_l2_00021951]"	chr4:117017567-117017508	hs|4q26	Agilent_HUMAN_G3V2	ENST00000509983	ENST00000509983	chr4	117017508	117017567	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4263_PI429285431	2.2564766	A	6.013377	P	0.0739707954390319	0	lncRNA	4220-1_{1..687}	"transcript_id ""ENST00000564363.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564363.1"" | genecode_v17"	chr12	 52452534	 52453220	-	ENSG00000259884.1	ENST00000564363.1	RP11-1100L3.8	RP11-1100L3.8-001	NR4A1	"hg19_refFlat_NR4A3:range=chr9:102589053-1026261495'pad=0,hg19_refFlat_NR4A3:range=chr9:102589053-1026261495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NR4A1:range=chr12:52435677-524527285'pad=0,hg19_refFlat_NR4A1:range=chr12:52435677-524527285'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.00;hg19_refFlat_NR4A3:range=chr9:102590325-1026261495'pad=0,hg19_refFlat_NR4A3:range=chr9:102590325-1026261495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NR4A1:range=chr12:52448113-524527285'pad=0,hg19_refFlat_NR4A1:range=chr12:52448113-524527285'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.00chr12:52442534-52453291"	NA	inner
CUST_24731_PI429285431	1.331628	A	1.2820429	A	1.03496723815807	0	lncRNA	26277-1_{1..367}	lnc-CTSZ-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTSZ-2:2	chr20	 57463829	 57464195	-	lnc-CTSZ-2	lnc-CTSZ-2:2	ENSG00000225806.1	RP1-309F20.3	GNAS	NA	chr20:57453829-57473864	inner
CUST_40092_PI429285431	4.244233	P	4.573598	P	0.795886714984057	0	lncRNA	40938-1_{1..3000}	n407453|NR_026909|lncRNA|Homosapiens||RefGeneNoncode|NR_026909||3.5553500|-0.2239783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407453|NR_026909|lncRNA|Homosapiens||RefGeneNoncode|NR_026909||3.5553500|-0.2239783	chr2	220110200	220113199	+	NA	NA	NA	NA	GLB1L	NA	chr2:220101493-220110131	inner
CUST_27477_PI429285431	3.6640935	P	3.6308286	P	1.02332535005012	0	lncRNA	29047-1_{1..2584}	n324653|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317992|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317992|-1.1424700|-0.2854824	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324653|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317992|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317992|-1.1424700|-0.2854824	chr22	 44814809	 44817392	-	NA	NA	NA	NA	NA	"hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0,hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00"	NA	inter
CUST_11959_PI429285431	5.1982594	P	5.497156	P	0.812873859719151	0	lncRNA	13538-1_{1..898}	lnc-MARCH6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MARCH6-1:1	chr5	 10331451	 10332348	+	lnc-MARCH6-1	lnc-MARCH6-1:1	XLOC_004292	linc-MARCH6	NA	NA	NA	inter
CUST_16795_PI429285431	2.1319187	A	1.4984518	A	1.55128837557076	0	lncRNA	18503-1_{1..305}	lnc-C1orf212-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf212-1:1	chr1	 35083017	 35083321	-	lnc-C1orf212-1	lnc-C1orf212-1:1	XLOC_000781	linc-CSMD2	NA	NA	NA	inter
CUST_14342_PI429285431	5.9352593	P	6.148692	P	0.862482625830376	0	lncRNA	15999-1_{1..293}	lnc-C14orf79-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf79-2:1	chr14	105561877	105562169	+	lnc-C14orf79-2	lnc-C14orf79-2:1	XLOC_010952	linc-BTBD6-1	NA	NA	NA	inter
CUST_9193_PI429285431	3.3056004	P	2.9872928	A	1.24686701303649	0	lncRNA	10706-1_{1..1634}	lnc-C7orf49-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C7orf49-1:1	chr7	134511027	134512660	-	lnc-C7orf49-1	lnc-C7orf49-1:1	ENSG00000248289	ENST00000515756	CALD1	NA	chr7:134501027-134521072	inner
CUST_43662_PI429285431	1.4778736	A	1.8219746	A	0.787798732011296	0	lncRNA	48417-2_{3001..3880}	"gi|341915113|ref|XR_132472.1| PREDICTED: Homo sapiens uncharacterized LOC100287813 (LOC100287813), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915113|ref|XR_132472.1| PREDICTED: Homo sapiens uncharacterized LOC100287813 (LOC100287813), misc_RNA"	NA	NA	NA	NA	NA	XR_132472.1	NA	NA	NA	"hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.91;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70"	NA	Unknown
CUST_17050_PI429285431	8.124483	P	7.9867425	P	1.100180700202	0	lncRNA	18760-1_{1..1360}	lnc-NR2F1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR2F1-1:2	chr5	 92910441	 92911800	+	lnc-NR2F1-1	lnc-NR2F1-1:2	XLOC_004475	linc-NR2F1-1	NR2F1	NA	chr5:92919043-92920714	inter
CUST_30932_PI429285431	10.103788	P	10.1074505	P	0.997464568101942	0	lncRNA	32720-1_{1..346}	n336994|BC113818|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000340557|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000340557|1.9298100|-0.0251499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336994|BC113818|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000340557|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000340557|1.9298100|-0.0251499	NA	NA	      345	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40805_PI429285431	0.8964461	A	1.5235568	A	0.647471816106796	0	lncRNA	41511-1_{1..2334}	n410566|NR_037805|lncRNA|Homosapiens||RefGeneNoncode|NR_037805||2.0120800|-0.2203054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410566|NR_037805|lncRNA|Homosapiens||RefGeneNoncode|NR_037805||2.0120800|-0.2203054	chr19	 53430387	 53432720	-	NA	NA	NA	NA	ZNF816-ZNF321P	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50chr19:53430388-53455847"	NA	inner
CUST_18243_PI429285431	2.631129	A	3.0817518	P	0.731726899086016	0	lncRNA	19977-1_{1..2470}	lnc-GNAT1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNAT1-1:2	chr3	 50257505	 50259974	+	lnc-GNAT1-1	lnc-GNAT1-1:2	ENSG00000188338	SLC38A3	SLC38A3	NA	chr3:50247505-50258406	inner
CUST_4892_PI429285431	2.8739185	A	2.161202	A	1.63888713046685	0	lncRNA	4834-1_{1..667}	"transcript_id ""ENST00000556652.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556652.1"" | genecode_v17"	chr14	 75081396	 75082062	-	ENSG00000258976.1	ENST00000556652.1	CTD-2207P18.2	CTD-2207P18.2-002	LTBP2	NA	chr14:75071396-75079034	inter
CUST_11274_PI429285431	6.067437	P	6.3099236	P	0.845287136266427	0	lncRNA	12835-1_{1..3000}	lnc-WDR27-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR27-1:1	chr6	169846128	169849127	-	lnc-WDR27-1	lnc-WDR27-1:1	XLOC_005939	linc-THBS2-3	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80"	NA	inter
LNCA_21_P0007053	1.0495634	A	0.91477674	A	1.09793044419828	0	lncRNA	TCONS_00018692	NA	NA	NA	NA	XLOC_008424	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008424), lincRNA [TCONS_00018692]"	chr10:29046159-29046338	hs|10p12.1	Agilent_HUMAN_G3V2	TCONS_00018692	TCONS_00018692	chr10	 29046159	 29046338	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30612_PI429285431	0.9472437	A	0.9426127	A	1.00321512204646	0	lncRNA	32394-1_{1..397}	n335935|X70305|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323091|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323091|-0.9581610|-0.2652726	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335935|X70305|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323091|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323091|-0.9581610|-0.2652726	chr14	 22508840	 22509236	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34048_PI429285431	0.9218986	A	1.8994768	A	0.507831503165028	0	lncRNA	35579-1_{1..2132}	n340865|AK097585|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3330|NULL|-1.1981800|-0.3330838	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n340865|AK097585|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3330|NULL|-1.1981800|-0.3330838	chr6	 19068773	 19070904	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34854_PI429285431	0.9108255	A	1.0017416	A	0.938926349035072	0	lncRNA	36280-1_{1..1841}	n341760|AF131806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4234|NULL|-0.7381060|-0.1812757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341760|AF131806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4234|NULL|-0.7381060|-0.1812757	chr9	116304732	116306572	+	NA	NA	NA	NA	RGS3	NA	chr9:116294732-116316551	inner
CUST_34258_PI429285431	1.4831693	A	1.3887992	A	1.06759917815749	0	lncRNA	35759-2_{3001..4990}	n341115|AB096240|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3581|NULL|-1.1941700|-0.3611030	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341115|AB096240|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3581|NULL|-1.1941700|-0.3611030	chr11	109297857	109299846	+	NA	NA	NA	NA	C11orf87	NA	chr11:109292846-109299893	inner
CUST_17676_PI429285431	0.9023122	A	1.6405481	A	0.599471927176244	0	lncRNA	19405-1_{1..828}	lnc-ARRDC3-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARRDC3-1:5	chr5	 90609897	 90610724	-	lnc-ARRDC3-1	lnc-ARRDC3-1:5	XLOC_004924	linc-LYSMD3-2	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_50457_PI429285431	0.9036274	A	0.9046393	A	0.999298850288408	0	lncRNA	54161-4_{9001..12000}	hg19_lincRNAsTranscripts_TCONS_l2_00030253 range=chrX:73164177-73234961 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030253 range=chrX:73164177-73234961 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 73173177	 73176176	+	NA	NA	NA	NA	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_34065_PI429285431	2.2754219	A	3.1312664	P	0.552541794568887	0	lncRNA	35594-1_{1..302}	n340886|Z83937|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3351|NULL|-1.1965000|-0.3193490	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340886|Z83937|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3351|NULL|-1.1965000|-0.3193490	chr6	 25292176	 25292477	+	NA	NA	NA	NA	LRRC16A	NA	chr6:25282176-25302479	inner
CUST_28377_PI429285431	3.166362	P	3.1927881	P	0.981849563153139	0	lncRNA	30029-1_{1..814}	n325692|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045277|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045277|-1.1058500|-0.3014908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325692|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045277|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045277|-1.1058500|-0.3014908	chr13	 74024987	 74025800	+	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60"	NA	inter
CUST_48154_PI429285431	0.91185755	A	1.0983033	A	0.878768005699363	0	lncRNA	52019-1_{1..1639}	"gi|397137705|ref|XR_133067.2| PREDICTED: Homo sapiens U3 small nucleolar ribonucleoprotein protein MPP10-like (LOC100653133), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397137705|ref|XR_133067.2| PREDICTED: Homo sapiens U3 small nucleolar ribonucleoprotein protein MPP10-like (LOC100653133), misc_RNA"	NA	NA	NA	NA	NA	XR_133067.2	NA	NA	NA	NA	NA	Unknown
CUST_46246_PI429285431	1.0774117	A	0.90640455	A	1.12584416580926	0	lncRNA	50485-1_{1..2484}	"gi|337756618|ref|NR_038991.1| Homo sapiens RBM26 antisense RNA 1 (RBM26-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|337756618|ref|NR_038991.1| Homo sapiens RBM26 antisense RNA 1 (RBM26-AS1), non-coding RNA"	Chr13	 79980444	 79982927	+	100505538	NR_038991.1	NA	NA	NA	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80"	NA	inter
CUST_43669_PI429285431	5.88663	P	6.522437	P	0.643580714450438	0	lncRNA	48424-1_{1..1399}	"gi|310118774|ref|XR_108311.1| PREDICTED: Homo sapiens uncharacterized LOC100506128, transcript variant 1 (LOC100506128), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310118774|ref|XR_108311.1| PREDICTED: Homo sapiens uncharacterized LOC100506128, transcript variant 1 (LOC100506128), misc_RNA"	NA	NA	NA	NA	NA	XR_108311.1	NA	NA	NA	NA	NA	Unknown
CUST_21072_PI429285431	10.853119	P	10.871626	P	0.987253854176983	0	lncRNA	22698-1_{1..2014}	lnc-CDK20-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK20-2:1	chr9	 90473458	 90475471	-	lnc-CDK20-2	lnc-CDK20-2:1	ENSG00000214888.2	XXyac-YM21GA2.7	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60"	NA	inter
CUST_38545_PI429285431	0.9308325	A	0.9188856	A	1.00831534204088	0	lncRNA	39552-1_{1..1518}	n383254|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002klb.1||1.5170600|-0.3210789	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n383254|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002klb.1||1.5170600|-0.3210789	chr18	  1254389	  1255906	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37863_PI429285431	7.8021464	P	7.6386557	P	1.11999376435662	0	lncRNA	38956-1_{1..3000}	n346399|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1949|NULL|-1.3140500|-0.2076451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346399|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1949|NULL|-1.3140500|-0.2076451	chr6	 37521902	 37524901	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
CUST_8430_PI429285431	3.2070138	P	3.6513896	P	0.734902212469931	0	lncRNA	10001-1_{1..1800}	lnc-QRFP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-QRFP-1:1	chr9	133345784	133347583	-	lnc-QRFP-1	lnc-QRFP-1:1	ENSG00000249728	ENST00000503205	ASS1	"hg19_refFlat_ASS1:range=chr9:133327616-1333764085'pad=0,hg19_refFlat_ASS1:range=chr9:133327616-1333764085'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30chr9:133335784-133357096"	NA	inner
LNCA_21_P0005820	1.1381657	A	1.9886792	A	0.554587306043021	0	lncRNA	ENST00000519764	NA	NA	NA	NA	XLOC_007057	NA	ENST00000519764	NA	NA	"BROAD Institute lincRNA (XLOC_007057), lincRNA [TCONS_00014978]"	chr8:38409832-38409773	hs|8p11.22	Agilent_HUMAN_G3V2	ENST00000519764	ENST00000519764	chr8	 38409773	 38409832	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4582_PI429285431	0.9274557	A	0.90914875	A	1.01277026297707	0	lncRNA	4531-1_{1..906}	"transcript_id ""ENST00000414407.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000414407.1"" | genecode_v17"	chr13	 31377343	 31378248	+	ENSG00000237879.1	ENST00000414407.1	LINC00398	LINC00398-001	NA	NA	NA	inter
CUST_22068_PI429285431	2.9618015	A	3.119297	P	0.896580172345019	0	lncRNA	23674-1_{1..800}	lnc-DLEU7-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DLEU7-3:1	chr13	 51746389	 51747188	-	lnc-DLEU7-3	lnc-DLEU7-3:1	ENSG00000226792.2	LINC00371	NA	NA	NA	inter
CUST_30257_PI429285431	4.9005237	P	5.0150294	P	0.923698736629152	0	lncRNA	32032-1_{1..205}	n335133|AY223853|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251093|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251093|-1.1980400|-0.0687622	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335133|AY223853|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251093|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251093|-1.1980400|-0.0687622	chr20	  3652901	  3653105	+	NA	NA	NA	NA	SIGLEC1	"hg19_refFlat_ADAM33:range=chr20:3649610-36626515'pad=0,hg19_refFlat_ADAM33:range=chr20:3649610-36626515'pad=0 3'pad=0 strand=- repeatMasking=none,-105.90chr20:3667617-3672724"	NA	inner
CUST_45894_PI429285431	0.89725876	A	0.8945696	A	1.00186572196952	0	lncRNA	50208-3_{6001..9000}	"gi|403048746|ref|NR_073141.1| Homo sapiens progesterone receptor (PGR), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|403048746|ref|NR_073141.1| Homo sapiens progesterone receptor (PGR), transcript variant 4, non-coding RNA"	Chr11	100906355	100909354	-	5241	NR_073141.2	NA	NA	NA	NA	NA	inter
CUST_50257_PI429285431	3.07943	A	1.6046942	A	2.77932741627882	0	lncRNA	53980-1_{1..558}	hg19_lincRNAsTranscripts_TCONS_l2_00029361 range=chr9:68430095-68440107 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029361 range=chr9:68430095-68440107 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 68430095	 68430652	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35534_PI429285431	0.904827	A	1.2363898	A	0.794675185114992	0	lncRNA	36952-1_{1..3000}	n342658|BC050295|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5160|NULL|-1.1675100|-0.3562597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342658|BC050295|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5160|NULL|-1.1675100|-0.3562597	chr5	 65264658	 65267657	+	NA	NA	NA	NA	ERBB2IP	NA	chr5:65254658-65278220	inner
CUST_6337_PI429285431	2.0415804	A	2.630019	A	0.665062301317626	0	lncRNA	6260-1_{1..543}	"transcript_id ""ENST00000414548.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414548.1"" | genecode_v17"	chr19	 12663411	 12663953	+	ENSG00000230310.1	ENST00000414548.1	CTD-2192J16.11	CTD-2192J16.11-001	ZNF490	NA	chr19:12670299-12674458	inter
LNCA_21_P0008440	1.553527	A	0.9160807	A	1.55557321638255	0	lncRNA	TCONS_00022749	NA	NA	NA	NA	XLOC_011029	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011029), lincRNA [TCONS_00022749]"	chr14:54652006-54651947	hs|14q22.2	Agilent_HUMAN_G3V2	TCONS_00022749	TCONS_00022749	chr14	 54651947	 54652006	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6420_PI429285431	1.1568478	A	1.7778119	A	0.650236253541312	0	lncRNA	6359-1_{1..562}	"transcript_id ""ENST00000587140.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587140.1"" | genecode_v17"	chr19	 28823704	 28824265	-	ENSG00000267320.1	ENST00000587140.1	AC005780.1	AC005780.1-001	NA	NA	NA	inter
CUST_41619_PI429285431	8.273005	P	8.117865	P	1.1135296705791	0	lncRNA	42992-1_{1..92}	ENST00000384873 ncrna:miRNA chromosome:GRCh37:3:49058051:49058142:-1 gene:ENSG00000207605 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384873 ncrna:miRNA chromosome:GRCh37:3:49058051:49058142:-1 gene:ENSG00000207605 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 49058051	 49058142	-	ENSG00000207605	ENST00000384873	NA	NA	QRICH1	NA	chr3:49067142-49068142	inner
CUST_36529_PI429285431	0.9078232	A	0.9012541	A	1.0045637354083	0	lncRNA	37729-2_{3001..3999}	n345031|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_580|NULL|-1.3040100|-0.2256947	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n345031|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_580|NULL|-1.3040100|-0.2256947	chr8	142253098	142254096	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6100_PI429285431	1.2252469	A	1.9673741	A	0.597857183999896	0	lncRNA	6026-1_{1..1854}	"transcript_id ""ENST00000584531.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584531.1"" | genecode_v17"	chr18	 14946266	 14948119	+	ENSG00000266554.1	ENST00000584531.1	RP11-527H14.2	RP11-527H14.2-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.01;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10"	NA	inter
CUST_22117_PI429285431	0.90234005	A	0.9000287	A	1.00160338979282	0	lncRNA	23721-2_{3001..5329}	lnc-GUCY1A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-GUCY1A2-1:1	chr11	106547738	106550066	-	lnc-GUCY1A2-1	lnc-GUCY1A2-1:1	ENSG00000260512.1	RP13-259F12.2	GUCY1A2	NA	chr11:106557910-106560066	inner
CUST_32066_PI429285431	0.9162532	A	1.279896	A	0.777199673520054	0	lncRNA	33776-2_{3001..3884}	n338627|AL137277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1037|NULL|-1.1253000|-0.3040718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338627|AL137277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1037|NULL|-1.1253000|-0.3040718	chr2	  1036073	  1036956	-	NA	NA	NA	NA	SNTG2	NA	chr2:1023073-1046926	inner
CUST_50353_PI429285431	8.836781	P	8.96607	P	0.914281922624797	0	lncRNA	54067-1_{1..612}	hg19_lincRNAsTranscripts_TCONS_l2_00029136 range=chr9:139441945-139444197 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029136 range=chr9:139441945-139444197 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	139441945	139442556	+	NA	NA	NA	NA	NOTCH1	NA	chr9:139431945-139440238	inter
CUST_11997_PI429285431	3.5043476	P	3.7506905	P	0.843030714753946	0	lncRNA	13578-1_{1..535}	lnc-LAPTM4A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LAPTM4A-1:1	chr2	 20254046	 20254580	-	lnc-LAPTM4A-1	lnc-LAPTM4A-1:1	XLOC_002007	linc-LAPTM4A-2	LAPTM4A	NA	chr2:20244046-20251789	inter
CUST_22509_PI429285431	4.719623	P	4.8257833	P	0.929057439556506	0	lncRNA	24096-1_{1..546}	lnc-NPR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPR2-1:1	chr9	 35780264	 35780809	+	lnc-NPR2-1	lnc-NPR2-1:1	ENSG00000227388.2	RP11-112J3.16	NA	NA	NA	inter
CUST_40132_PI429285431	4.885421	P	4.9210434	P	0.975610777040137	0	lncRNA	40972-1_{1..2015}	n407712|NR_027181|lncRNA|Homosapiens||RefGeneNoncode|NR_027181||6.9977000|-0.1706978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407712|NR_027181|lncRNA|Homosapiens||RefGeneNoncode|NR_027181||6.9977000|-0.1706978	chr2	121221910	121223924	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50331_PI429285431	6.8951106	P	7.7209134	P	0.564168178830171	0	lncRNA	54049-1_{1..667}	hg19_lincRNAsTranscripts_TCONS_l2_00029060 range=chr9:132099178-132117879 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029060 range=chr9:132099178-132117879 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132099178	132099844	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48750_PI429285431	2.1911745	A	1.0126734	A	2.26341495479062	0	lncRNA	52587-1_{1..612}	hg19_lincRNAsTranscripts_TCONS_l2_00014003 range=chr2:136753804-136765009 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014003 range=chr2:136753804-136765009 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	136753804	136754415	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33612_PI429285431	1.0948194	A	0.9126059	A	1.13462338193548	0	lncRNA	35177-1_{1..223}	n340369|U10509|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2830|NULL|-1.3031400|-0.1924205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340369|U10509|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2830|NULL|-1.3031400|-0.1924205	chr5	 10168894	 10169116	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3878_PI429285431	0.9305191	A	0.92220706	A	1.00577809626302	0	lncRNA	3847-1_{1..685}	"transcript_id ""ENST00000533591.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533591.1"" | genecode_v17"	chr11	 23186733	 23187417	+	ENSG00000255418.1	ENST00000533591.1	RP11-266A24.1	RP11-266A24.1-002	NA	NA	NA	inter
CUST_48868_PI429285431	1.2191808	A	0.9239753	A	1.22705974933875	0	lncRNA	52704-1_{1..1101}	hg19_lincRNAsTranscripts_TCONS_l2_00018477 range=chr3:27674417-27688218 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018477 range=chr3:27674417-27688218 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	 27674417	 27675517	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45443_PI429285431	3.8201458	P	3.802134	P	1.01256308920858	0	lncRNA	49861-1_{1..2159}	"gi|226053461|ref|NR_027440.1| Homo sapiens uncharacterized LOC100272217 (LOC100272217), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226053461|ref|NR_027440.1| Homo sapiens uncharacterized LOC100272217 (LOC100272217), non-coding RNA"	Chr9	133452737	133454895	-	100272217	NR_027440.1	NA	NA	NA	NA	NA	inter
CUST_36749_PI429285431	7.4840174	P	7.319097	P	1.12110421993979	0	lncRNA	37922-1_{1..474}	n345229|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_778|NULL|-1.3161300|-0.2986087	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345229|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_778|NULL|-1.3161300|-0.2986087	chr13	 73667763	 73668236	-	NA	NA	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80"	NA	inter
CUST_41179_PI429285431	9.9225855	P	10.162096	P	0.847032658019457	0	lncRNA	42016-1_{1..86}	ENST00000581077 ncrna:miRNA chromosome:GRCh37:15:75081013:75081098:-1 gene:ENSG00000264386 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581077 ncrna:miRNA chromosome:GRCh37:15:75081013:75081098:-1 gene:ENSG00000264386 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 75081013	 75081098	-	ENSG00000264386	ENST00000581077	NA	NA	CSK	NA	chr15:75074425-75091098	inner
CUST_11434_PI429285431	1.4282775	A	1.0915357	A	1.2629012194274	0	lncRNA	13002-1_{1..1573}	lnc-FOXO3-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-FOXO3-1:9	chr6	109089594	109091166	+	lnc-FOXO3-1	lnc-FOXO3-1:9	XLOC_005421	linc-ARMC2	NA	NA	NA	inter
CUST_9969_PI429285431	7.5856752	P	8.161907	P	0.670713339253998	0	lncRNA	11493-1_{1..623}	lnc-HEATR6-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HEATR6-1:3	chr17	 58165558	 58166180	-	lnc-HEATR6-1	lnc-HEATR6-1:3	XLOC_012538	linc-HEATR6-2	HEATR6	NA	chr17:58155558-58156292	inter
CUST_22828_PI429285431	0.9062834	A	0.9031002	A	1.00220886205449	0	lncRNA	24408-1_{1..198}	lnc-TTC23-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTC23-2:1	chr15	 99941455	 99941652	-	lnc-TTC23-2	lnc-TTC23-2:1	ENSG00000259760.1	RP11-20G13.2	NA	NA	NA	inter
CUST_42599_PI429285431	5.5830474	P	5.968607	P	0.765482021836252	0	lncRNA	45453-1_{1..76}	ENST00000515997 ncrna:snoRNA chromosome:GRCh37:20:2443608:2443683:-1 gene:ENSG00000251806 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515997 ncrna:snoRNA chromosome:GRCh37:20:2443608:2443683:-1 gene:ENSG00000251806 gene_biotype:snoRNA transcript_biotype:snoRNA	chr20	  2443608	  2443683	-	ENSG00000251806	ENST00000515997	NA	NA	SNRPB	NA	chr20:2442281-2451499	inter
CUST_43170_PI429285431	2.2726905	A	2.1561205	A	1.08415422495139	0	lncRNA	47984-1_{1..413}	ENST00000599404 havana:sense_intronic chromosome:GRCh37:19:35129027:35131594:-1 gene:ENSG00000268683 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000599404 havana:sense_intronic chromosome:GRCh37:19:35129027:35131594:-1 gene:ENSG00000268683 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 35129027	 35129439	-	ENSG00000268683	ENST00000599404	NA	NA	LOC100130342	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chr19:35136289-35137743"	NA	inter
CUST_41611_PI429285431	9.33091	P	9.293503	P	1.02626762578853	0	lncRNA	42981-1_{1..102}	ENST00000584324 ncrna:miRNA chromosome:GRCh37:HSCHR6_MHC_DBB:31906802:31906903:-1 gene:ENSG00000265895 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584324 ncrna:miRNA chromosome:GRCh37:HSCHR6_MHC_DBB:31906802:31906903:-1 gene:ENSG00000265895 gene_biotype:miRNA transcript_biotype:miRNA	chrHSCHR6_MHC_DBB	 31906802	 31906903	-	ENSG00000265895	ENST00000584324	NA	NA	NA	NA	NA	Unknown
CUST_48329_PI429285431	6.61014	P	7.137209	P	0.693963168429746	0	lncRNA	52185-1_{1..288}	hg19_lincRNAsTranscripts_TCONS_l2_00000219 range=chr1:38567981-38569317 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000219 range=chr1:38567981-38569317 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 38567981	 38568268	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5735_PI429285431	0.9053414	A	0.91003954	A	0.996748794158292	0	lncRNA	5659-1_{1..511}	"transcript_id ""ENST00000581533.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581533.1"" | genecode_v17"	chr17	 13861065	 13861575	-	ENSG00000266744.1	ENST00000581533.1	RP11-131K5.1	RP11-131K5.1-001	NA	NA	NA	inter
CUST_20169_PI429285431	0.9237891	A	0.9229406	A	1.00058830836823	0	lncRNA	21814-1_{1..543}	lnc-ITSN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITSN2-1:1	chr2	 24424296	 24424838	-	lnc-ITSN2-1	lnc-ITSN2-1:1	ENSG00000223754.1	AC008073.9	ITSN2	NA	chr2:24425735-24434567	inter
CUST_37162_PI429285431	5.6310635	P	5.758185	P	0.915656568971406	0	lncRNA	38279-1_{1..1735}	n345598|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1147|NULL|-1.2837500|-0.1880172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345598|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1147|NULL|-1.2837500|-0.1880172	chr3	137764167	137765901	+	NA	NA	NA	NA	DZIP1L	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90chr3:137780827-137781903"	NA	inter
CUST_19093_PI429285431	2.5564127	A	2.2681293	A	1.22118637640988	0	lncRNA	20783-1_{1..3000}	lnc-MTAP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MTAP-2:1	NA	NA	     2999	NA	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_C7orf69:range=chr7:47834934-478591955'pad=0,hg19_refFlat_C7orf69:range=chr7:47834934-478591955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20"	NA	Unknown
CUST_27012_PI429285431	0.90482605	A	1.134967	A	0.852551594179696	0	lncRNA	28542-1_{1..3000}	n324117|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052436|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052436|-1.2179500|-0.3089896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324117|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052436|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052436|-1.2179500|-0.3089896	chr9	 37069892	 37072891	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30"	NA	inter
CUST_28592_PI429285431	0.98009694	A	0.96655977	A	1.0094274119356	0	lncRNA	30272-1_{1..1780}	n325953|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048332|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048332|-1.1710100|-0.3674885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325953|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048332|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048332|-1.1710100|-0.3674885	chr10	 69907760	 69909539	-	NA	NA	NA	NA	MYPN	"hg19_refFlat_MYPN:range=chr10:69881196-699702125'pad=0,hg19_refFlat_MYPN:range=chr10:69881196-699702125'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_MYPN:range=chr10:69896469-699702125'pad=0,hg19_refFlat_MYPN:range=chr10:69896469-699702125'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60chr10:69897760-69920527"	NA	inner
LNCA_21_P0014595	2.3692598	A	0.9844538	A	2.61136839841427	0	lncRNA	ENST00000434792	XR_110453	XR_110453	NA	NA	LOC100505856	NA	ENST00000434792	THC2664489	NA	"PREDICTED: Homo sapiens hypothetical LOC100505856 (LOC100505856), miscRNA [XR_110453]"	chr10:106086227-106086286	hs|10q25.1	Agilent_HUMAN_G3V2	ENST00000434792	ENST00000434792	chr10	106086227	106086286	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27532_PI429285431	0.90917224	A	0.90878063	A	1.00027148021146	0	lncRNA	29108-1_{1..1857}	n324717|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320115|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320115|0.2567920|-0.2432398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324717|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320115|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320115|0.2567920|-0.2432398	chr22	 19994109	 19995965	-	NA	NA	NA	NA	C22orf25	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00chr22:20008631-20017143"	NA	inner
CUST_35592_PI429285431	9.742667	P	9.534599	P	1.15514022965961	0	lncRNA	37007-1_{1..876}	n342728|CR620748|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5231|NULL|1.7183800|-0.2685696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342728|CR620748|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5231|NULL|1.7183800|-0.2685696	chr6	 26321748	 26322623	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39091_PI429285431	0.93022805	A	0.91989696	A	1.0071866669334	0	lncRNA	40067-1_{1..506}	n385640|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azi.1||-0.7851640|-0.1686704	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n385640|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azi.1||-0.7851640|-0.1686704	chr9	102117621	102118126	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38195_PI429285431	1.797285	A	0.9264854	A	1.82867614599713	0	lncRNA	39263-1_{1..1277}	n381521|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001keo.3||1.2417100|-0.2870245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n381521|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001keo.3||1.2417100|-0.2870245	chr10	 89079304	 89080580	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7167_PI429285431	0.9188639	A	0.92437875	A	0.996184694116492	0	lncRNA	7277-1_{1..300}	"transcript_id ""ENST00000410910.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410910.1"" | genecode_v17"	chr2	 17304108	 17304407	-	ENSG00000222842.1	ENST00000410910.1	RN7SKP168	RN7SKP168-201	NA	NA	NA	inter
LNCA_21_P0008582	2.7046885	A	3.1208854	A	0.749397515615541	0	lncRNA	TCONS_00023296	NA	NA	NA	NA	XLOC_011165	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011165), lincRNA [TCONS_00023296]"	chr15:22512204-22512263	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023296	TCONS_00023296	chr15	 22512204	 22512263	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41464_PI429285431	2.7526112	A	2.9807448	P	0.853738650720909	0	lncRNA	42655-1_{1..96}	ENST00000384919 ncrna:miRNA chromosome:GRCh37:13:41384902:41384997:1 gene:ENSG00000207652 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384919 ncrna:miRNA chromosome:GRCh37:13:41384902:41384997:1 gene:ENSG00000207652 gene_biotype:miRNA transcript_biotype:miRNA	chr13	 41384902	 41384997	+	ENSG00000207652	ENST00000384919	NA	NA	SLC25A15	NA	chr13:41374902-41386596	inter
CUST_2048_PI429285431	2.9066944	A	3.3769293	P	0.721847056857832	0	lncRNA	2040-1_{1..721}	"transcript_id ""ENST00000507435.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507435.1"" | genecode_v17"	chr5	  4452043	  4452763	-	ENSG00000248973.1	ENST00000507435.1	RP11-445O3.2	RP11-445O3.2-001	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90"	NA	inter
CUST_23549_PI429285431	1.0376188	A	0.94238085	A	1.06824158327305	0	lncRNA	25116-1_{1..579}	lnc-LOX-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LOX-4:2	chr5	121814281	121814859	-	lnc-LOX-4	lnc-LOX-4:2	ENSG00000250328.1	CTC-210G5.1	NA	NA	NA	inter
CUST_33650_PI429285431	1.0106412	A	0.97270757	A	1.02664231479742	0	lncRNA	35214-1_{1..1355}	n340413|BC013940|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2874|NULL|-1.2029400|-0.5137329	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340413|BC013940|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2874|NULL|-1.2029400|-0.5137329	chr5	 15775819	 15777173	+	NA	NA	NA	NA	FBXL7	NA	chr5:15765819-15787145	inner
CUST_24518_PI429285431	1.7898653	A	2.2596056	A	0.722094570539405	0	lncRNA	26069-1_{1..2315}	lnc-AP001793.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AP001793.1-1:1	chr18	  8402845	  8405159	+	lnc-AP001793.1-1	lnc-AP001793.1-1:1	ENSG00000265413.1	RP11-789C17.1	PTPRM	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70chr18:8392845-8406859"	NA	inner
CUST_49547_PI429285431	1.7182214	A	1.8491384	A	0.913250788929051	0	lncRNA	53339-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00024809 range=chr6:69339822-69344886 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024809 range=chr6:69339822-69344886 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 69339822	 69342821	-	NA	NA	NA	NA	BAI3	NA	chr6:69345632-69354886	inter
CUST_12998_PI429285431	5.2886353	P	5.0720625	P	1.16196998276272	0	lncRNA	14625-1_{1..580}	lnc-EGF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EGF-1:1	chr4	111291100	111291679	+	lnc-EGF-1	lnc-EGF-1:1	XLOC_003646	linc-ENPEP-1	NA	NA	NA	inter
CUST_37227_PI429285431	0.9637552	A	0.92971766	A	1.02387354203434	0	lncRNA	38338-1_{1..3000}	n345661|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1210|NULL|-1.3073900|-0.3771628	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345661|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1210|NULL|-1.3073900|-0.3771628	chr5	 18514966	 18517965	-	NA	NA	NA	NA	NA	"hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-27.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_IGSF5:range=chr21:41117437-411732845'pad=0,hg19_refFlat_IGSF5:range=chr21:41117437-411732845'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70"	NA	inter
CUST_41560_PI429285431	0.9253008	A	0.9613544	A	0.975319225122778	0	lncRNA	42862-1_{1..83}	ENST00000580619 ncrna:miRNA chromosome:GRCh37:3:85434860:85434942:1 gene:ENSG00000264084 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580619 ncrna:miRNA chromosome:GRCh37:3:85434860:85434942:1 gene:ENSG00000264084 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 85434860	 85434942	+	ENSG00000264084	ENST00000580619	NA	NA	CADM2	NA	chr3:85424860-85444942	inner
CUST_41287_PI429285431	9.382979	P	9.338775	P	1.03111411010996	0	lncRNA	42275-1_{1..81}	ENST00000585070 ncrna:miRNA chromosome:GRCh37:17:26687677:26687757:1 gene:ENSG00000264302 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585070 ncrna:miRNA chromosome:GRCh37:17:26687677:26687757:1 gene:ENSG00000264302 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 26687677	 26687757	+	ENSG00000264302	ENST00000585070	NA	NA	VTN	NA	chr17:26694298-26697373	inter
CUST_32060_PI429285431	4.6088715	P	5.413649	P	0.572450359790224	0	lncRNA	33774-1_{1..3000}	n338623|BX648491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1032|NULL|-0.9419510|-0.2251874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338623|BX648491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1032|NULL|-0.9419510|-0.2251874	chr13	 30726022	 30729021	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36351_PI429285431	0.9224911	A	0.9482123	A	0.982329411524578	0	lncRNA	37577-1_{1..2886}	n344874|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_423|NULL|-1.5863000|-0.4323260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344874|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_423|NULL|-1.5863000|-0.4323260	chr6	 77628028	 77630913	+	NA	NA	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-12.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90"	NA	inter
CUST_32123_PI429285431	0.91837776	A	1.1785781	A	0.834971962907134	0	lncRNA	33824-1_{1..1154}	n338689|AL117577|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1106|NULL|-1.2947000|-0.4682123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338689|AL117577|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1106|NULL|-1.2947000|-0.4682123	chr2	 19687954	 19689107	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51388_PI429285431	1.2641128	A	1.801459	A	0.689037210073468	0	lncRNA	54976-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008900 range=chr15:101413885-101418827 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008900 range=chr15:101413885-101418827 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	101413885	101416884	+	NA	NA	NA	NA	ALDH1A3	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20chr15:101420009-101428827"	NA	inter
CUST_12705_PI429285431	1.9246321	A	1.1163024	A	1.75118281256656	0	lncRNA	14322-1_{1..390}	lnc-IGFBP4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGFBP4-1:1	chr17	 38676967	 38677356	+	lnc-IGFBP4-1	lnc-IGFBP4-1:1	XLOC_012197	linc-TMEM99-4	NA	NA	NA	inter
CUST_17934_PI429285431	1.3807362	A	1.6028303	A	0.857320115977577	0	lncRNA	19666-1_{1..1338}	lnc-C22orf26-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C22orf26-2:1	chr22	 46440489	 46441826	-	lnc-C22orf26-2	lnc-C22orf26-2:1	XLOC_014404	linc-WNT7B-2	C22orf26	NA	chr22:46446339-46450024	inter
LNCA_21_P0010985	2.704546	A	2.6569703	A	1.03352672890709	0	lncRNA	TCONS_l2_00004592	NA	NA	NA	NA	XLOC_l2_002355	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002355), lincRNA [TCONS_l2_00004592]"	chr11:66178468-66178527	hs|11q13.2	Agilent_HUMAN_G3V2	TCONS_l2_00004592	TCONS_l2_00004592	chr11	 66178468	 66178527	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33440_PI429285431	0.9505471	A	0.9750008	A	0.983192830060843	0	lncRNA	35018-1_{1..944}	n340172|BC036252|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2633|NULL|-0.9555500|-0.2388100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340172|BC036252|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2633|NULL|-0.9555500|-0.2388100	chr10	129849590	129850533	-	NA	NA	NA	NA	PTPRE	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80chr10:129839590-129860501"	NA	inner
CUST_17979_PI429285431	2.50818	A	3.3937094	P	0.541288859222178	0	lncRNA	19712-1_{1..312}	lnc-XRCC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-XRCC4-1:1	chr5	 82687126	 82687437	+	lnc-XRCC4-1	lnc-XRCC4-1:1	XLOC_004448	linc-VCAN	NA	NA	NA	inter
CUST_7913_PI429285431	9.479066	P	9.6256	P	0.903418273080857	0	lncRNA	9528-1_{1..586}	lnc-COG5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-COG5-1:1	chr7	107302469	107303054	-	lnc-COG5-1	lnc-COG5-1:1	ENSG00000233705	AC078937.4	SLC26A4	"hg19_refFlat_SLC26A4:range=chr7:107302087-1073558915'pad=0,hg19_refFlat_SLC26A4:range=chr7:107302087-1073558915'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.50chr7:107301080-107312596"	NA	inner
CUST_48447_PI429285431	0.90958154	A	0.9029441	A	1.00461132239638	0	lncRNA	52301-1_{1..850}	hg19_lincRNAsTranscripts_TCONS_l2_00001700 range=chr1:199916539-199929079 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001700 range=chr1:199916539-199929079 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	199916539	199917388	-	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40"	NA	inter
CUST_46315_PI429285431	3.8896637	P	2.3962076	A	2.81562675467126	0	lncRNA	50545-2_{3001..4930}	"gi|402471892|ref|NR_073129.1| Homo sapiens kinectin 1 (kinesin receptor) (KTN1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402471892|ref|NR_073129.1| Homo sapiens kinectin 1 (kinesin receptor) (KTN1), transcript variant 1, non-coding RNA"	Chr14	 56049925	 56051854	+	3895	NR_073129.1	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_22210_PI429285431	1.1418921	A	1.4804866	A	0.790811359652795	0	lncRNA	23809-1_{1..499}	lnc-BACH1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BACH1-2:5	chr21	 31135897	 31136395	+	lnc-BACH1-2	lnc-BACH1-2:5	ENSG00000174680.5	GRIK1-AS1	GRIK1	NA	chr21:31125897-31146321	inner
CUST_6749_PI429285431	4.1018763	P	4.2969007	P	0.873558121485641	0	lncRNA	6697-1_{1..332}	"transcript_id ""ENST00000435412.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435412.1"" | genecode_v17"	chr20	 61326376	 61326707	-	ENSG00000237687.2	ENST00000435412.1	LINC00686	LINC00686-001	NTSR1	NA	chr20:61340189-61341832	inter
CUST_36514_PI429285431	1.4142423	A	2.0069115	A	0.663114910383978	0	lncRNA	37714-1_{1..1701}	n345015|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_564|NULL|-1.3443200|-0.2906445	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345015|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_564|NULL|-1.3443200|-0.2906445	chr8	 96088312	 96090012	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-22.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-27.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10"	NA	inter
CUST_32542_PI429285431	4.0639496	P	3.063976	A	1.99996340216372	0	lncRNA	34208-1_{1..1423}	n339156|BC042017|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1586|NULL|-1.1464000|-0.3292658	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n339156|BC042017|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1586|NULL|-1.1464000|-0.3292658	chr2	223181962	223183384	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37732_PI429285431	1.1255157	A	0.917079	A	1.15543547891014	0	lncRNA	38827-1_{1..3000}	n346235|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1785|NULL|-1.5752300|-0.3287695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346235|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1785|NULL|-1.5752300|-0.3287695	chr10	  4789747	  4792746	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70"	NA	inter
CUST_490_PI429285431	1.0039377	A	0.92638403	A	1.05522720897995	0	lncRNA	481-1_{1..491}	"transcript_id ""ENST00000451341.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451341.1"" | genecode_v17"	chr1	177320722	177321212	+	ENSG00000224968.1	ENST00000451341.1	RP1-35C21.1	RP1-35C21.1-001	NA	NA	NA	inter
CUST_1839_PI429285431	0.92328596	M	0.97016555	A	0.968027816916646	0	lncRNA	1828-1_{1..557}	"transcript_id ""ENST00000508555.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508555.1"" | genecode_v17"	chr4	108179857	108180413	+	ENSG00000251081.1	ENST00000508555.1	RP11-713M6.2	RP11-713M6.2-001	NA	NA	NA	inter
CUST_28709_PI429285431	0.92017823	A	0.9138159	A	1.00441976959888	0	lncRNA	30409-1_{1..2287}	n326099|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046505|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046505|-0.2741510|-0.2691515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326099|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046505|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046505|-0.2741510|-0.2691515	chr10	  4083917	  4086203	+	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70"	NA	inter
CUST_8414_PI429285431	6.627421	P	6.063365	P	1.47841981686164	0	lncRNA	9989-1_{1..754}	lnc-WDR74-1:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR74-1:16	chr11	 62622896	 62623649	-	lnc-WDR74-1	lnc-WDR74-1:16	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62632960	inter
CUST_17009_PI429285431	0.90994513	A	0.90212524	A	1.00543505129755	0	lncRNA	18720-1_{1..585}	lnc-AP001496.1-12:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP001496.1-12:1	chr18	  4485171	  4485755	+	lnc-AP001496.1-12	lnc-AP001496.1-12:1	XLOC_012613	linc-ARHGAP28-7	NA	NA	NA	inter
CUST_50364_PI429285431	12.458344	P	12.112855	P	1.27058157187749	0	lncRNA	54078-1_{1..341}	hg19_lincRNAsTranscripts_TCONS_l2_00030147 range=chrX:12844420-12845068 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030147 range=chrX:12844420-12845068 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 12844420	 12844760	+	NA	NA	NA	NA	PRPS2	NA	chrX:12834420-12842346	inter
CUST_6861_PI429285431	2.6584835	A	2.9240727	A	0.831858932211365	0	lncRNA	6810-1_{1..520}	"transcript_id ""ENST00000440629.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440629.1"" | genecode_v17"	chr21	 38593720	 38594239	+	ENSG00000242553.1	ENST00000440629.1	AP001432.14	AP001432.14-001	DSCR3	NA	chr21:38595726-38620045	inner
CUST_3291_PI429285431	1.6344573	A	1.7144587	A	0.946056728665975	0	lncRNA	3269-1_{1..331}	"transcript_id ""ENST00000522087.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522087.1"" | genecode_v17"	chr8	124936999	124937329	-	ENSG00000254000.1	ENST00000522087.1	RP11-245A18.1	RP11-245A18.1-001	NA	NA	NA	inner
CUST_51197_PI429285431	1.2524161	A	0.9209036	A	1.2583318996678	0	lncRNA	54816-1_{1..2681}	hg19_lincRNAsTranscripts_TCONS_l2_00008937 range=chr15:23189968-23208293 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008937 range=chr15:23189968-23208293 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 23189968	 23192648	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40"	NA	inter
CUST_32715_PI429285431	1.7122881	A	2.4001899	A	0.620755997356523	0	lncRNA	34358-1_{1..837}	n339346|BC031657|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1778|NULL|-0.7070350|-0.2038825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339346|BC031657|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1778|NULL|-0.7070350|-0.2038825	chr16	 89748968	 89749804	-	NA	NA	NA	NA	SPATA2L	NA	chr16:89762765-89762998	inter
CUST_9537_PI429285431	4.5476117	P	4.763111	P	0.861248040181887	0	lncRNA	11049-1_{1..727}	lnc-GAPVD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GAPVD1-2:1	chr9	128174693	128175419	+	lnc-GAPVD1-2	lnc-GAPVD1-2:1	XLOC_007562	linc-PBX3-4	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-24.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0,hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40"	NA	inter
CUST_20590_PI429285431	0.90766764	A	0.9012384	A	1.00446635413917	0	lncRNA	22229-1_{1..558}	lnc-IPO5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-IPO5-1:1	chr13	 98985025	 98985582	+	lnc-IPO5-1	lnc-IPO5-1:1	ENSG00000225318.1	FARP1-IT1	FARP1	NA	chr13:98975025-98995492	inner
CUST_49836_PI429285431	1.981992	A	1.2946434	A	1.61032133196255	0	lncRNA	53594-1_{1..376}	hg19_lincRNAsTranscripts_TCONS_l2_00025981 range=chr7:65238352-65242218 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025981 range=chr7:65238352-65242218 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 65238352	 65238727	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7754_PI429285431	0.94475675	A	1.1937699	A	0.841471812331268	0	lncRNA	9381-1_{1..800}	lnc-COL25A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL25A1-1:2	chr4	110354890	110355689	-	lnc-COL25A1-1	lnc-COL25A1-1:2	ENSG00000247950	RP11-264J9.1	SEC24B	NA	chr4:110354971-110364939	inter
CUST_50549_PI429285431	7.493891	P	7.608358	P	0.92372351499156	0	lncRNA	54241-1_{1..338}	hg19_lincRNAsTranscripts_TCONS_l2_00030933 range=chrY:13362085-13370619 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030933 range=chrY:13362085-13370619 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrY	 13362085	 13362422	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00"	NA	inter
CUST_29393_PI429285431	4.7492666	P	4.3309045	P	1.33640945983132	0	lncRNA	31145-1_{1..1325}	n332696|AF007193|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061898|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061898|1.0854600|-0.1825470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332696|AF007193|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061898|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061898|1.0854600|-0.1825470	chr7	100550841	100552165	+	NA	NA	NA	NA	MUC3A	NA	chr7:100547257-100561005	inter
CUST_24773_PI429285431	1.9631706	A	2.1927688	A	0.852872389229878	0	lncRNA	26317-1_{1..3000}	lnc-SLC7A6OS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC7A6OS-2:1	chr16	 68259872	 68262871	-	lnc-SLC7A6OS-2	lnc-SLC7A6OS-2:1	ENSG00000262160.1	RP11-96D1.11	NFATC3	"hg19_refFlat_NFATC3:range=chr16:68119585-682603745'pad=0,hg19_refFlat_NFATC3:range=chr16:68119585-682603745'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.20chr16:68249872-68263162"	NA	inner
CUST_27500_PI429285431	3.0416143	A	3.114811	A	0.950529495254283	0	lncRNA	29073-2_{3001..4892}	n324680|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158310|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158310|2.7445500|-0.1420526	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324680|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158310|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158310|2.7445500|-0.1420526	chr22	 29700352	 29702243	+	NA	NA	NA	NA	GAS2L1	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-55.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-56.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr22:29702997-29708774"	NA	inner
CUST_36243_PI429285431	0.89547247	A	0.9221517	A	0.981677306528849	0	lncRNA	37488-3_{6001..6312}	n344780|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_329|NULL|-1.3209200|-0.3677044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344780|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_329|NULL|-1.3209200|-0.3677044	chr8	 72593444	 72593755	+	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60"	NA	inter
CUST_45955_PI429285431	7.8543224	P	6.591373	P	2.39985859243636	0	lncRNA	50248-3_{6001..8490}	"gi|242247144|ref|NR_027949.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant gamma, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|242247144|ref|NR_027949.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant gamma, non-coding RNA"	NA	NA	NA	NA	NA	NR_027949.1	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70"	NA	Unknown
CUST_32393_PI429285431	2.3032236	A	2.1900403	A	1.08161217777581	0	lncRNA	34070-1_{1..1798}	n338984|BC032407|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1412|NULL|-1.0895800|-0.4142293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n338984|BC032407|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1412|NULL|-1.0895800|-0.4142293	chr2	156877046	156878843	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45621_PI429285431	5.0600567	P	5.0134673	P	1.03282039872821	0	lncRNA	50005-1_{1..3000}	"gi|387762548|ref|NR_048575.1| Homo sapiens glutamate dehydrogenase 1 pseudogene 3 (GLUD1P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387762548|ref|NR_048575.1| Homo sapiens glutamate dehydrogenase 1 pseudogene 3 (GLUD1P3), non-coding RNA"	Chr10	 75491299	 75494298	+	2749	NR_048575.1	NA	NA	NA	NA	NA	inter
CUST_27877_PI429285431	1.770237	A	1.6750935	A	1.06817165018805	0	lncRNA	29470-1_{1..1134}	n325113|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331297|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331297|-1.2782000|-0.4799615	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325113|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331297|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331297|-1.2782000|-0.4799615	chr2	226753003	226754136	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42745_PI429285431	4.288418	P	4.8270106	P	0.688442181270456	0	lncRNA	45699-1_{1..72}	ENST00000364393 ncrna:snoRNA chromosome:GRCh37:14:101423503:101423574:1 gene:ENSG00000201263 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364393 ncrna:snoRNA chromosome:GRCh37:14:101423503:101423574:1 gene:ENSG00000201263 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101423503	101423574	+	ENSG00000201263	ENST00000364393	NA	NA	NA	NA	NA	inter
CUST_18152_PI429285431	5.634905	P	5.3492947	P	1.21892579403042	0	lncRNA	19886-1_{1..773}	lnc-ARHGEF35-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARHGEF35-1:5	chr7	144052431	144053203	-	lnc-ARHGEF35-1	lnc-ARHGEF35-1:5	ENSG00000244479	RP4-798C17.6	ARHGEF5	NA	chr7:144052489-144062774	inner
CUST_11582_PI429285431	1.2073957	A	0.92679745	A	1.21469848543217	0	lncRNA	13161-1_{1..563}	lnc-ASB3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASB3-2:1	chr2	 52924973	 52925535	-	lnc-ASB3-2	lnc-ASB3-2:1	XLOC_002096	linc-NRXN1-3	NA	NA	NA	inter
CUST_17853_PI429285431	0.923254	A	0.9197537	A	1.00242916873712	0	lncRNA	19588-1_{1..619}	lnc-CDK20-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK20-4:1	chr9	 90728169	 90728787	-	lnc-CDK20-4	lnc-CDK20-4:1	XLOC_007764	linc-CDK20-1	NA	NA	NA	inter
CUST_17040_PI429285431	0.9102185	A	0.905631	A	1.00318487365808	0	lncRNA	18750-1_{1..1791}	lnc-NETO1-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NETO1-1:14	chr18	 70826776	 70828566	-	lnc-NETO1-1	lnc-NETO1-1:14	XLOC_012877	linc-NETO1-3	NA	NA	NA	inter
CUST_36200_PI429285431	2.8458686	P	2.6687808	A	1.13059937141202	0	lncRNA	37459-1_{1..3000}	n344748|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_297|NULL|-1.3401800|-0.1775181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344748|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_297|NULL|-1.3401800|-0.1775181	chr20	 37049229	 37052228	-	NA	NA	NA	NA	NA	"hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_19801_PI429285431	5.103168	P	5.011867	P	1.06533044787806	0	lncRNA	21458-1_{1..554}	lnc-CLCN3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLCN3-3:1	chr4	170914699	170915252	+	lnc-CLCN3-3	lnc-CLCN3-3:1	ENSG00000249955.1	RP11-6E9.4	MFAP3L	NA	chr4:170907748-170924957	inner
CUST_32156_PI429285431	1.165365	A	0.8956373	A	1.20558026020221	0	lncRNA	33857-1_{1..338}	n338725|AF161366|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1145|NULL|3.3563800|-0.1770867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338725|AF161366|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1145|NULL|3.3563800|-0.1770867	chr13	 50194447	 50194784	+	NA	NA	NA	NA	ARL11	NA	chr13:50202435-50204784	inter
CUST_23429_PI429285431	5.167633	P	5.712458	P	0.685474546028125	0	lncRNA	24997-1_{1..584}	lnc-SLA2-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLA2-3:3	chr20	 35201315	 35201898	-	lnc-SLA2-3	lnc-SLA2-3:3	ENSG00000232907.2	RP5-977B1.7	TGIF2	NA	chr20:35201876-35211560	inter
CUST_3026_PI429285431	1.2021247	A	0.91738904	A	1.21818703904665	0	lncRNA	3005-1_{1..467}	"transcript_id ""ENST00000519803.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519803.1"" | genecode_v17"	chr8	 19536083	 19536549	+	ENSG00000253270.1	ENST00000519803.1	RP11-1105O14.1	RP11-1105O14.1-001	CSGALNACT1	NA	chr8:19526083-19540261	inter
CUST_23412_PI429285431	1.4479195	A	1.7502244	A	0.810955749610455	0	lncRNA	24980-1_{1..569}	lnc-KIF15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIF15-1:1	chr3	 44942321	 44942889	+	lnc-KIF15-1	lnc-KIF15-1:1	ENSG00000235845.1	RP11-272D20.2	TGM4	NA	chr3:44932321-44952417	inner
CUST_2116_PI429285431	1.3205576	A	1.2192142	A	1.07277193483883	0	lncRNA	2107-1_{1..369}	"transcript_id ""ENST00000507926.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507926.1"" | genecode_v17"	chr5	 25415755	 25416123	-	ENSG00000248605.1	ENST00000507926.1	CTD-2306M5.1	CTD-2306M5.1-002	NA	NA	NA	inter
CUST_52070_PI429285431	8.213062	P	8.580919	P	0.774932738521849	0	lncRNA	55598-1_{1..757}	hg19_lincRNAsTranscripts_TCONS_l2_00017851 range=chr22:16186809-16193039 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017851 range=chr22:16186809-16193039 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 16186809	 16187565	-	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_37255_PI429285431	1.032714	A	1.4684424	A	0.739320386086136	0	lncRNA	38362-1_{1..2635}	n345687|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1236|NULL|-1.2929700|-0.2664938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345687|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1236|NULL|-1.2929700|-0.2664938	chr13	 41447703	 41450337	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3733_PI429285431	4.9786057	P	5.018782	P	0.972536094442485	0	lncRNA	3702-1_{1..549}	"transcript_id ""ENST00000530606.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530606.1"" | genecode_v17"	chr10	 77033055	 77033603	+	ENSG00000226051.2	ENST00000530606.1	ZNF503-AS1	ZNF503-AS1-002	NA	NA	NA	inter
CUST_5222_PI429285431	1.1384639	A	0.91433996	A	1.16806773743883	0	lncRNA	5163-1_{1..1358}	"transcript_id ""ENST00000560882.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560882.1"" | genecode_v17"	chr15	 69760375	 69761732	+	ENSG00000245750.3	ENST00000560882.1	RP11-279F6.1	RP11-279F6.1-006	NA	NA	NA	inter
CUST_46571_PI429285431	1.3280512	A	0.9037085	A	1.34196095849559	0	lncRNA	50755-1_{1..2125}	"gi|310123420|ref|XR_109239.1| PREDICTED: Homo sapiens uncharacterized LOC100287301 (GS52), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123420|ref|XR_109239.1| PREDICTED: Homo sapiens uncharacterized LOC100287301 (GS52), misc_RNA"	NA	NA	NA	NA	NA	XR_109239.1	NA	NA	NA	NA	NA	Unknown
CUST_44284_PI429285431	5.873287	P	5.6149635	P	1.19608796923709	0	lncRNA	48919-1_{1..3000}	"gi|297747358|ref|NR_033703.1| Homo sapiens myoneurin (MYNN), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|297747358|ref|NR_033703.1| Homo sapiens myoneurin (MYNN), transcript variant 5, non-coding RNA"	Chr3	169490853	169493852	+	55892	NR_033703.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50"	NA	inter
CUST_2409_PI429285431	1.5308452	A	2.133383	A	0.658594422859903	0	lncRNA	2401-1_{1..706}	"transcript_id ""ENST00000517595.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517595.1"" | genecode_v17"	chr5	157851593	157852298	+	ENSG00000254350.1	ENST00000517595.1	RP11-542A14.1	RP11-542A14.1-001	NA	NA	NA	inter
CUST_20303_PI429285431	6.3898005	P	6.311002	P	1.05613810513139	0	lncRNA	21946-2_{3001..3253}	lnc-SRGAP3-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SRGAP3-1:14	chr3	  9438672	  9438924	-	lnc-SRGAP3-1	lnc-SRGAP3-1:14	ENSG00000206573.4	RP11-58B17.1	LOC100652926	NA	chr3:9435634-9438752	inter
CUST_23094_PI429285431	5.389371	P	5.7196326	P	0.795392244347998	0	lncRNA	24666-1_{1..821}	lnc-G2E3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-G2E3-2:1	chr14	 30449043	 30449863	+	lnc-G2E3-2	lnc-G2E3-2:1	ENSG00000257904.1	RP11-269C4.2	NA	NA	NA	inter
CUST_15199_PI429285431	0.928174	A	1.610419	A	0.623194756557154	0	lncRNA	16867-1_{1..376}	lnc-SLC40A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC40A1-1:1	chr2	190305749	190306124	-	lnc-SLC40A1-1	lnc-SLC40A1-1:1	XLOC_002433	linc-COL5A2	WDR75	NA	chr2:190295749-190315828	inter
CUST_17460_PI429285431	0.9136043	A	0.9191978	A	0.996130387566357	0	lncRNA	19185-1_{1..535}	lnc-MAPK6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAPK6-2:2	chr15	 52378514	 52379048	+	lnc-MAPK6-2	lnc-MAPK6-2:2	XLOC_011252	linc-UNC13C-8	NA	NA	NA	inter
CUST_24576_PI429285431	2.7742617	A	2.9287982	P	0.898420965566937	0	lncRNA	26124-1_{1..427}	lnc-RAPH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAPH1-1:1	chr2	204193546	204193972	-	lnc-RAPH1-1	lnc-RAPH1-1:1	ENSG00000256458.1	RP11-363J17.1	ABI2	NA	chr2:204183546-204203949	inner
CUST_41917_PI429285431	0.91364133	A	0.89866024	A	1.01043820216895	0	lncRNA	43660-1_{1..67}	ENST00000390702 ncrna:miRNA chromosome:GRCh37:X:69242707:69242773:1 gene:ENSG00000211991 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390702 ncrna:miRNA chromosome:GRCh37:X:69242707:69242773:1 gene:ENSG00000211991 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 69242707	 69242773	+	ENSG00000211991	ENST00000390702	NA	NA	EDA	NA	chrX:69232707-69252773	inner
CUST_5831_PI429285431	0.9008976	A	1.113637	A	0.862897199172541	0	lncRNA	5760-1_{1..630}	"transcript_id ""ENST00000593050.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593050.1"" | genecode_v17"	chr17	 34990527	 34991156	+	ENSG00000267067.1	ENST00000593050.1	CTB-75G16.3	CTB-75G16.3-001	NA	NA	NA	inter
CUST_20048_PI429285431	1.1150287	A	0.90029955	A	1.16048602554527	0	lncRNA	21699-1_{1..543}	lnc-FOXB1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXB1-3:4	chr15	 60922643	 60923185	+	lnc-FOXB1-3	lnc-FOXB1-3:4	ENSG00000245534.2	RP11-219B17.1	RORA	NA	chr15:60912643-60932715	inner
CUST_12587_PI429285431	0.912957	A	0.9190602	A	0.995778519731952	0	lncRNA	14199-1_{1..1003}	lnc-NDFIP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDFIP2-1:1	chr13	 80145215	 80146217	+	lnc-NDFIP2-1	lnc-NDFIP2-1:1	XLOC_010446	linc-SLITRK5-16	NA	NA	NA	inter
CUST_46452_PI429285431	2.6760907	A	3.567133	P	0.539224405488076	0	lncRNA	50658-2_{3001..6000}	"gi|388454171|ref|NR_049761.1| Homo sapiens mitogen-activated protein kinase binding protein 1 (MAPKBP1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388454171|ref|NR_049761.1| Homo sapiens mitogen-activated protein kinase binding protein 1 (MAPKBP1), transcript variant 4, non-coding RNA"	Chr15	 42069632	 42072631	+	23005	NR_049761.1	NA	NA	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.71;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90"	NA	inter
CUST_46247_PI429285431	0.9025166	A	0.9101438	A	0.994727178209455	0	lncRNA	50486-1_{1..812}	"gi|388556536|ref|NR_046871.1| Homo sapiens long intergenic non-protein coding RNA 333 (LINC00333), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|388556536|ref|NR_046871.1| Homo sapiens long intergenic non-protein coding RNA 333 (LINC00333), non-coding RNA"	NA	NA	NA	NA	NA	NR_046871.1	NA	NA	NA	NA	NA	Unknown
CUST_28715_PI429285431	0.8935277	A	0.89104867	A	1.00171980983455	0	lncRNA	30415-1_{1..758}	n326105|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046494|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046494|-1.1471500|-0.2095441	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326105|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046494|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046494|-1.1471500|-0.2095441	chr10	  3783258	  3784015	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38085_PI429285431	2.3687932	A	2.5065508	A	0.908930821154972	0	lncRNA	39161-1_{1..3000}	n381080|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001bgg.1||-0.7472240|-0.2156651	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381080|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001bgg.1||-0.7472240|-0.2156651	chr1	 23243782	 23246781	+	NA	NA	NA	NA	EPHB2	NA	chr1:23233782-23241823	inter
CUST_32508_PI429285431	3.554364	A	0.92213917	A	6.19981355307616	0	lncRNA	34175-1_{1..2034}	n339112|AK074359|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1542|NULL|6.0055800|-0.3346065	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339112|AK074359|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1542|NULL|6.0055800|-0.3346065	chr16	 18849782	 18851815	-	NA	NA	NA	NA	SMG1	NA	chr16:18839782-18871683	inner
CUST_8918_PI429285431	4.1133566	P	4.0922813	P	1.01471550724238	0	lncRNA	10453-1_{1..743}	lnc-TIGIT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TIGIT-1:1	chr3	113954038	113954780	+	lnc-TIGIT-1	lnc-TIGIT-1:1	ENSG00000241490	RP11-553L6.2	ZNF80	NA	chr3:113950248-113956425	inner
CUST_24148_PI429285431	7.790244	P	7.6277504	P	1.11921996259845	0	lncRNA	25700-1_{1..798}	lnc-NMNAT3-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NMNAT3-3:2	chr3	140173499	140174296	-	lnc-NMNAT3-3	lnc-NMNAT3-3:2	ENSG00000249290.1	RP11-68L1.2	CLSTN2	NA	chr3:140163499-140183595	inner
CUST_21663_PI429285431	1.0749623	A	1.3803864	A	0.809204304873307	0	lncRNA	23273-1_{1..591}	lnc-CA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CA1-1:1	chr8	 86376811	 86377401	-	lnc-CA1-1	lnc-CA1-1:1	ENSG00000253549.1	RP11-317J10.2	CA2	"hg19_refFlat_CA3:range=chr8:86351139-863603825'pad=0,hg19_refFlat_CA3:range=chr8:86351139-863603825'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40chr8:86376131-86387144"	NA	inner
CUST_23397_PI429285431	1.3124242	A	1.0997428	A	1.15884000925085	0	lncRNA	24965-1_{1..306}	lnc-DPCD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DPCD-1:1	chr10	103571247	103571552	+	lnc-DPCD-1	lnc-DPCD-1:1	ENSG00000229793.1	RP11-190J1.7	MGEA5	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80chr10:103561247-103578222"	NA	inner
CUST_3708_PI429285431	5.848151	P	5.803798	P	1.03122060797126	0	lncRNA	3676-1_{1..794}	"transcript_id ""ENST00000444770.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444770.1"" | genecode_v17"	chr10	 65424424	 65425217	+	ENSG00000228566.1	ENST00000444770.1	RP11-170M17.1	RP11-170M17.1-001	NA	NA	NA	inter
CUST_42739_PI429285431	4.684742	P	5.1352177	P	0.731801511191438	0	lncRNA	45691-1_{1..73}	ENST00000459342 ncrna:snoRNA chromosome:GRCh37:11:93466394:93466466:-1 gene:ENSG00000239195 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459342 ncrna:snoRNA chromosome:GRCh37:11:93466394:93466466:-1 gene:ENSG00000239195 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 93466394	 93466466	-	ENSG00000239195	ENST00000459342	NA	NA	KIAA1731	NA	chr11:93456394-93463522	inter
CUST_1334_PI429285431	2.5552998	A	2.5865254	A	0.978588612612623	0	lncRNA	1323-1_{1..533}	"transcript_id ""ENST00000605513.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605513.1"" | genecode_v17"	chr3	 33838641	 33839173	-	ENSG00000271020.1	ENST00000605513.1	RP11-10C24.1	RP11-10C24.1-001	PDCD6IP	NA	chr3:33840066-33849173	inter
CUST_4123_PI429285431	0.92111367	A	0.9140761	A	1.00488998896546	0	lncRNA	4083-1_{1..514}	"transcript_id ""ENST00000532652.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532652.1"" | genecode_v17"	chr11	134433290	134433803	+	ENSG00000254573.1	ENST00000532652.1	AP004550.1	AP004550.1-001	NA	NA	NA	inter
LNCA_21_P0006778	7.94968	P	8.133109	P	0.880607477626882	0	lncRNA	ENST00000449882	NA	NA	NA	NA	XLOC_008897	NA	ENST00000449882	NA	NA	"BROAD Institute lincRNA (XLOC_008897), lincRNA [TCONS_00018020]"	chr10:91427636-91427577	hs|10q23.31	Agilent_HUMAN_G3V2	ENST00000449882	ENST00000449882	chr10	 91427577	 91427636	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34903_PI429285431	3.454764	P	3.1144059	P	1.2660708140114	0	lncRNA	36327-1_{1..1005}	n341820|BC021141|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4299|NULL|-1.1533500|-0.3028683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341820|BC021141|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4299|NULL|-1.1533500|-0.3028683	chr6	 35188146	 35189150	-	NA	NA	NA	NA	SCUBE3	NA	chr6:35182190-35199134	inner
CUST_728_PI429285431	0.9221924	A	0.9114965	A	1.00744138343075	0	lncRNA	721-1_{1..2236}	"transcript_id ""ENST00000426969.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000426969.1"" | genecode_v17"	chr2	  8062556	  8064791	-	ENSG00000235665.1	ENST00000426969.1	AC007464.1	AC007464.1-001	NA	NA	NA	inter
CUST_30580_PI429285431	2.518677	A	3.0669193	A	0.683852789529597	0	lncRNA	32362-1_{1..382}	n335830|X57721|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322124|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322124|2.4581200|-0.2166080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335830|X57721|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322124|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322124|2.4581200|-0.2166080	chr7	142161936	142162317	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36339_PI429285431	0.94556844	A	1.1988207	A	0.839002921843979	0	lncRNA	37569-1_{1..2350}	n344866|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_415|NULL|-1.7217900|-0.2311751	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344866|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_415|NULL|-1.7217900|-0.2311751	chr6	  1490480	  1492829	+	NA	NA	NA	NA	NA	"hg19_refFlat_ELF2:range=chr4:139980137-1400053445'pad=0,hg19_refFlat_ELF2:range=chr4:139980137-1400053445'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40"	NA	inter
CUST_8748_PI429285431	7.9796715	P	8.094567	P	0.923449197315623	0	lncRNA	10290-1_{1..1629}	lnc-TAF12-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TAF12-1:7	chr1	 28908102	 28909730	-	lnc-TAF12-1	lnc-TAF12-1:7	ENSG00000197989	SNHG12	TRNAU1AP	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90chr1:28898102-28905057"	NA	inter
LNCA_21_P0002431	0.9275297	A	0.92227226	A	1.00365082780902	0	lncRNA	TCONS_00004225	NA	NA	NA	NA	XLOC_002067	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002067), lincRNA [TCONS_00004225]"	chr2:43199605-43199546	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00004225	TCONS_00004225	chr2	 43199546	 43199605	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36585_PI429285431	1.081424	A	1.3484448	A	0.831033880108425	0	lncRNA	37779-1_{1..275}	n345081|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_630|NULL|-1.4014400|-0.5217829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345081|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_630|NULL|-1.4014400|-0.5217829	chrX	 40938787	 40939061	+	NA	NA	NA	NA	USP9X	NA	chrX:40944888-40949133	inter
CUST_44989_PI429285431	5.6800847	P	5.7026024	P	0.984513094562499	0	lncRNA	49498-1_{1..1518}	"gi|254039602|ref|NR_028059.1| Homo sapiens postmeiotic segregation increased 2 pseudogene 3 (PMS2P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254039602|ref|NR_028059.1| Homo sapiens postmeiotic segregation increased 2 pseudogene 3 (PMS2P3), non-coding RNA"	NW_003871064.1	  3036983	  3038500	-	5387	NR_028059.1	NA	NA	NA	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	Unknown
CUST_9150_PI429285431	3.9044945	P	4.183182	P	0.824340624797137	0	lncRNA	10669-1_{1..543}	lnc-CRYBA4-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:4	chr22	 27061495	 27062037	+	lnc-CRYBA4-1	lnc-CRYBA4-1:4	ENSG00000225783	XLOC_014192	NA	NA	NA	inter
CUST_2166_PI429285431	0.9091134	A	0.9243896	A	0.98946720750395	0	lncRNA	2158-1_{1..526}	"transcript_id ""ENST00000502647.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502647.1"" | genecode_v17"	chr5	 57047019	 57047544	-	ENSG00000249198.1	ENST00000502647.1	RP11-772C9.1	RP11-772C9.1-001	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00"	NA	inter
CUST_37055_PI429285431	0.9268709	A	0.9183982	A	1.00589010698048	0	lncRNA	38189-1_{1..3000}	n345506|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1055|NULL|-1.2835500|-0.4154358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345506|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1055|NULL|-1.2835500|-0.4154358	chr2	184043953	184046952	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49984_PI429285431	1.5639904	A	1.4297732	A	1.09749715505921	0	lncRNA	53723-2_{3001..4945}	hg19_lincRNAsTranscripts_TCONS_l2_00026278 range=chr7:150102459-150109699 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026278 range=chr7:150102459-150109699 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	150105459	150107403	+	NA	NA	NA	NA	ZNF775	NA	chr7:150092459-150095719	inter
CUST_47828_PI429285431	8.600896	P	7.996788	P	1.52003864207637	0	lncRNA	51739-3_{6001..9000}	"gi|410170958|ref|XR_171122.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410170958|ref|XR_171122.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	XR_171122.1	NA	NA	NA	NA	NA	Unknown
CUST_15068_PI429285431	1.3908327	A	0.9802249	A	1.32924570052604	0	lncRNA	16732-1_{1..469}	lnc-CETN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CETN1-1:1	chr18	   570665	   571133	+	lnc-CETN1-1	lnc-CETN1-1:1	XLOC_012602	linc-CETN1-1	CETN1	NA	chr18:580369-581069	inter
CUST_44448_PI429285431	0.9334561	A	0.9173737	A	1.01120983478304	0	lncRNA	49056-1_{1..3000}	"gi|359279885|ref|NR_045580.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|359279885|ref|NR_045580.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 9, non-coding RNA"	Chr4	159442866	159445865	+	59350	NR_045580.1	NA	NA	NA	NA	NA	inter
CUST_9003_PI429285431	2.0546372	A	1.5270351	A	1.44153123760913	0	lncRNA	10531-1_{1..591}	lnc-CRYBA4-1:36	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:36	chr22	 27172790	 27173380	+	lnc-CRYBA4-1	lnc-CRYBA4-1:36	ENSG00000244625	XLOC_014192	NA	NA	NA	inter
CUST_6568_PI429285431	2.447741	A	2.5416098	A	0.937006655235891	0	lncRNA	6517-1_{1..423}	"transcript_id ""ENST00000594725.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594725.1"" | genecode_v17"	chr19	 52343177	 52343599	-	ENSG00000269483.1	ENST00000594725.1	AC006272.1	AC006272.1-001	NA	NA	NA	inter
CUST_13303_PI429285431	5.0479527	P	5.029663	P	1.01275815356926	0	lncRNA	14937-1_{1..284}	lnc-IGFL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGFL3-1:1	chr19	 46683862	 46684145	-	lnc-IGFL3-1	lnc-IGFL3-1:1	XLOC_013364	linc-IGFL3-3	NA	NA	NA	inter
CUST_35654_PI429285431	2.8976607	A	3.3615258	P	0.725041208650267	0	lncRNA	37075-1_{1..1678}	n342810|AL117552|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5313|NULL|-1.2689900|-0.3924297	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n342810|AL117552|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5313|NULL|-1.2689900|-0.3924297	chr7	 65908392	 65910069	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40415_PI429285431	1.1037371	A	0.9197288	A	1.13603580051999	0	lncRNA	41200-1_{1..1895}	n409281|NR_033489|lncRNA|Homosapiens||RefGeneNoncode|NR_033489||-1.0618900|-0.2668854	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409281|NR_033489|lncRNA|Homosapiens||RefGeneNoncode|NR_033489||-1.0618900|-0.2668854	chr6	  2940297	  2942191	-	NA	NA	NA	NA	SERPINB6	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40chr6:2948393-2966709"	NA	inner
CUST_19406_PI429285431	0.90970016	A	0.90987235	A	0.999880654109267	0	lncRNA	21068-1_{1..424}	lnc-HAPLN1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HAPLN1-2:1	chr5	 82857850	 82858273	-	lnc-HAPLN1-2	lnc-HAPLN1-2:1	ENSG00000249835.2	VCAN-AS1	VCAN	NA	chr5:82847850-82868133	inner
CUST_23558_PI429285431	1.5888586	A	2.2181885	A	0.646476619713525	0	lncRNA	25125-1_{1..520}	lnc-SHISA9-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SHISA9-4:1	chr16	 12640142	 12640661	+	lnc-SHISA9-4	lnc-SHISA9-4:1	ENSG00000260601.1	RP11-552C15.1	SNX29	NA	chr16:12630142-12650541	inner
CUST_42482_PI429285431	11.988009	P	11.877797	P	1.07938683772712	0	lncRNA	45242-1_{1..134}	ENST00000384674 ncrna:snoRNA chromosome:GRCh37:16:2012974:2013107:-1 gene:ENSG00000207405 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384674 ncrna:snoRNA chromosome:GRCh37:16:2012974:2013107:-1 gene:ENSG00000207405 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	  2012974	  2013107	-	ENSG00000207405	ENST00000384674	NA	NA	RPL3L	NA	chr16:2002974-2004679	inter
CUST_26138_PI429285431	6.111139	P	5.1726933	P	1.91646240865264	0	lncRNA	27649-1_{1..739}	lnc-PDCD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDCD1-2:1	chr2	242741057	242741795	-	lnc-PDCD1-2	lnc-PDCD1-2:1	ENSG00000215023.2	AC114730.5	GAL3ST2	"hg19_refFlat_GAL3ST2:range=chr2:242716371-2427435815'pad=0,hg19_refFlat_GAL3ST2:range=chr2:242716371-2427435815'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.50;hg19_refFlat_GAL3ST1:range=chr22:30950940-309533795'pad=0,hg19_refFlat_GAL3ST1:range=chr22:30950940-309533795'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr2:242731057-242743702"	NA	inner
CUST_179_PI429201921	2.266996	A	3.040454	A	0.58501357202215	0	lncRNA	148-2_{3001..4556}	TC20001252.hg.1	 TCONS_00028192-XLOC_013543 // Rinn lincRNAs // linc-ARFGEF2-12 chr20:+:46523131-46525630 // chr20 // 100 // 100 // 0 // --- // 0 /// TCONS_00028189-XLOC_013543 // Rinn lincRNAs // linc-ARFGEF2-12 chr20:+:46523122-46525630 // chr20 // 100 // 100 // 0 // --- // 0 /// TCONS_00028190-XLOC_013543 // Rinn lincRNAs // linc-ARFGEF2-12 chr20:+:46523122-46525630 // chr20 // 100 // 100 // 0 // --- // 0 /// TCONS_00028191-XLOC_013543 // Rinn lincRNAs // linc-ARFGEF2-12 chr20:+:46523122-46525630 // chr20 // 100 // 100 // 0 // --- // 0 ///TCONS_00028187-XLOC_013543 // Rinn lincRNAs // linc-ARFGEF2-12 chr20:+:46523122-46525630 // chr20 // 100 // 100 // 0 // --- // 0 /// TCONS_00028186-XLOC_013543 // Rinn lincRNAs // linc-ARFGEF2-12 chr20:+:46523122-46525630 // chr20 // 100 // 100 // 0 // --- // 0 /// TCONS_00028188-XLOC_013543 // Rinn lincRNAs // linc-ARFGEF2-12 chr20:+:46523122-46525630 // chr20 // 100 // 100 // 0 // --- // 0 /// TCONS_00028184-XLOC_013543 // Rinn lincRNAs // linc-ARFGEF2-12 chr20:+:46523122-46525630 // chr20 // 100 // 100 // 0 // --- // 0 /// TCONS_00028193-XLOC_013543 // Rinn lincRNAs // linc-ARFGEF2-12 chr20:+:46523132-46527679 // chr20 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr20:+:46523122-46525630	NA	Affy_HUMAN_HTA2.0	TCONS_00028187-XLOC_013543	linc-ARFGEF2-12	chr20	 46523122	 46525630	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2916_PI429285431	0.92792135	A	0.9201393	A	1.00540868039981	0	lncRNA	2897-1_{1..1577}	"transcript_id ""ENST00000426413.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426413.1"" | genecode_v17"	chr7	119390869	119392445	-	ENSG00000225546.1	ENST00000426413.1	RP11-328J2.1	RP11-328J2.1-001	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90"	NA	inter
CUST_2898_PI429285431	0.9250293	A	0.9376978	A	0.991257306507042	0	lncRNA	2879-1_{1..3000}	"transcript_id ""ENST00000602761.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602761.1"" | genecode_v17"	chr7	106417988	106420987	+	ENSG00000228742.5	ENST00000602761.1	RP5-884M6.1	RP5-884M6.1-004	NA	NA	NA	inter
CUST_50395_PI429285431	1.8100723	A	1.9024397	A	0.937982297377714	0	lncRNA	54099-2_{3001..3139}	hg19_lincRNAsTranscripts_TCONS_l2_00030416 range=chrX:281391-284839 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030416 range=chrX:281391-284839 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	   284391	   284529	-	NA	NA	NA	NA	PPP2R3B	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80chrX:294668-294839"	NA	inter
CUST_34878_PI429285431	2.6770406	A	2.5928702	A	1.0600779842305	0	lncRNA	36303-1_{1..2035}	n341791|BC036799|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4268|NULL|-0.6275260|-0.1356210	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341791|BC036799|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4268|NULL|-0.6275260|-0.1356210	chr9	132242883	132244917	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2324_PI429285431	1.2304926	A	1.8543224	A	0.648945937474807	0	lncRNA	2316-1_{1..637}	"transcript_id ""ENST00000509669.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509669.1"" | genecode_v17"	chr5	117260703	117261339	+	ENSG00000249797.1	ENST00000509669.1	CTD-3179P9.1	CTD-3179P9.1-002	NA	NA	NA	inter
CUST_50243_PI429285431	1.3517597	A	1.2309203	A	1.08736733899709	0	lncRNA	53967-1_{1..518}	hg19_lincRNAsTranscripts_TCONS_l2_00029341 range=chr9:67917363-67925019 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029341 range=chr9:67917363-67925019 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 67917363	 67917880	-	NA	NA	NA	NA	ANKRD20A1	"hg19_refFlat_GTF2I:range=chr7:74103463-741731685'pad=0,hg19_refFlat_GTF2I:range=chr7:74103463-741731685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80chr9:67926761-67935019"	NA	inter
CUST_47429_PI429285431	6.543753	P	5.873157	P	1.59173040055238	0	lncRNA	51465-1_{1..1539}	"gi|338970360|ref|NR_040115.1| Homo sapiens ANKRD62P1-PARP4P3 readthrough (non-protein coding) (ANKRD62P1-PARP4P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|338970360|ref|NR_040115.1| Homo sapiens ANKRD62P1-PARP4P3 readthrough (non-protein coding) (ANKRD62P1-PARP4P3), non-coding RNA"	Chr22	 17134598	 17136136	-	23783	NR_040115.1	NA	NA	NA	NA	NA	inter
CUST_10974_PI429285431	6.0848465	P	6.0521593	P	1.02291566075936	0	lncRNA	12517-1_{1..304}	lnc-GPR101-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR101-1:2	chrX	136646049	136646352	-	lnc-GPR101-1	lnc-GPR101-1:2	XLOC_008246	linc-GPR101	ZIC3	NA	chrX:136648346-136654259	inter
CUST_42136_PI429285431	7.367695	P	5.1162767	P	4.76150715298828	0	lncRNA	44153-1_{1..92}	ENST00000390147 ncrna:miRNA chromosome:GRCh37:2:204629430:204629521:-1 gene:ENSG00000211573 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390147 ncrna:miRNA chromosome:GRCh37:2:204629430:204629521:-1 gene:ENSG00000211573 gene_biotype:miRNA transcript_biotype:miRNA	chr2	204629430	204629521	-	ENSG00000211573	ENST00000390147	NA	NA	NA	NA	NA	inter
CUST_45392_PI429285431	5.4367943	P	5.7685857	P	0.7945492760695	0	lncRNA	49822-1_{1..1805}	"gi|201025394|ref|NR_024129.1| Homo sapiens long intergenic non-protein coding RNA 92 (LINC00092), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|201025394|ref|NR_024129.1| Homo sapiens long intergenic non-protein coding RNA 92 (LINC00092), non-coding RNA"	NA	NA	NA	NA	NA	NR_024129.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10"	NA	Unknown
CUST_30018_PI429285431	10.294262	P	9.784837	P	1.42348273976969	0	lncRNA	31786-1_{1..317}	n334456|U13222|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218136|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218136|3.0761600|-0.0338664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334456|U13222|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218136|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218136|3.0761600|-0.0338664	chr5	 72743513	 72743829	-	NA	NA	NA	NA	FOXD1	NA	chr5:72742083-72744352	inner
CUST_151_PI429201921	5.317583	P	5.220013	P	1.06996974289657	0	lncRNA	131-2_{3001..4039}	TC06002802.hg.1	TCONS_00011305-XLOC_005297 // Rinn lincRNAs // linc-TMEM63B-1 chr6:+:44041649-44045689 // chr6 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6:+:44041649-44045689	NA	Affy_HUMAN_HTA2.0	TCONS_00011305-XLOC_005297	linc-TMEM63B-1	chr6	 44041649	 44045689	+	NA	NA	NA	NA	PRDM16	NA	chr1:2985742-2990246	Unknown
CUST_32174_PI429285431	11.652287	P	12.6088705	P	0.515275713273834	0	lncRNA	33873-1_{1..1084}	n338745|BC026300|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1166|NULL|-1.0867400|-0.2489569	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n338745|BC026300|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1166|NULL|-1.0867400|-0.2489569	chr13	 54689923	 54691006	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14290_PI429285431	1.9881841	A	2.4091678	A	0.74691516737942	0	lncRNA	15949-1_{1..527}	lnc-SPACA7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPACA7-2:1	chr13	112929740	112930266	+	lnc-SPACA7-2	lnc-SPACA7-2:1	XLOC_010506	linc-C13orf28-2	NA	NA	NA	inter
CUST_18031_PI429285431	1.4525185	A	1.8822894	A	0.742379665859653	0	lncRNA	19766-1_{1..606}	lnc-PTGFR-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTGFR-1:2	chr1	 78758164	 78758769	+	lnc-PTGFR-1	lnc-PTGFR-1:2	XLOC_000264	linc-PTGFR	NA	NA	NA	inter
CUST_34482_PI429285431	3.9626338	P	4.939369	P	0.508128327541851	0	lncRNA	35950-1_{1..759}	n341359|AL162065|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3828|NULL|-0.6787210|-0.1543107	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341359|AL162065|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3828|NULL|-0.6787210|-0.1543107	chr7	150069637	150070395	-	NA	NA	NA	NA	ZNF775	"hg19_refFlat_REPIN1:range=chr7:150066801-1500700345'pad=0,hg19_refFlat_REPIN1:range=chr7:150066801-1500700345'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.60;hg19_refFlat_REPIN1:range=chr7:150068331-1500700345'pad=0,hg19_refFlat_REPIN1:range=chr7:150068331-1500700345'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.60;hg19_refFlat_ZNF775:range=chr7:150085559-1500951835'pad=0,hg19_refFlat_ZNF775:range=chr7:150085559-1500951835'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60chr7:150076406-150080385"	NA	inner
LNCA_21_P0010780	1.0394385	A	1.8356289	A	0.575867815875859	0	lncRNA	ENST00000441085	NA	NA	NA	NA	XLOC_l2_001138	NA	ENST00000441085	THC2654596	NA	"BROAD Institute lincRNA (XLOC_l2_001138), lincRNA [TCONS_l2_00001557]"	chr1:156416311-156416252	hs|1q22	Agilent_HUMAN_G3V2	ENST00000441085	ENST00000441085	chr1	156416252	156416311	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5881_PI429285431	3.7473893	P	4.2408433	P	0.710322455880268	0	lncRNA	5811-1_{1..701}	"transcript_id ""ENST00000579972.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579972.1"" | genecode_v17"	chr17	 46537732	 46538432	+	ENSG00000264451.1	ENST00000579972.1	RP11-433M22.2	RP11-433M22.2-001	NA	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60"	NA	inter
CUST_3476_PI429285431	3.285707	P	3.5934963	P	0.807878756544724	0	lncRNA	3447-1_{1..1395}	"transcript_id ""ENST00000563268.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563268.1"" | genecode_v17"	chr9	 93759336	 93760730	+	ENSG00000260454.1	ENST00000563268.1	RP11-367F23.2	RP11-367F23.2-001	NA	NA	NA	inter
CUST_44816_PI429285431	2.743248	A	2.9857235	A	0.845293639874634	0	lncRNA	49350-1_{1..757}	"gi|310119849|ref|XR_110178.1| PREDICTED: Homo sapiens uncharacterized LOC100507406, transcript variant 2 (LOC100507406), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310119849|ref|XR_110178.1| PREDICTED: Homo sapiens uncharacterized LOC100507406, transcript variant 2 (LOC100507406), misc_RNA"	NA	NA	NA	NA	NA	XR_110178.1	NA	NA	NA	NA	NA	Unknown
CUST_5588_PI429285431	3.0542774	A	2.9768043	P	1.05516827949047	0	lncRNA	5517-1_{1..428}	"transcript_id ""ENST00000563811.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563811.1"" | genecode_v17"	chr16	 65614571	 65614998	+	ENSG00000261818.1	ENST00000563811.1	RP11-351A20.1	RP11-351A20.1-001	NA	NA	NA	inter
LNCA_21_P0006951	1.0482564	A	1.0283066	A	1.01392419868149	0	lncRNA	TCONS_00018410	NA	NA	NA	NA	XLOC_008694	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008694), lincRNA [TCONS_00018410]"	chr10:3474822-3474763	hs|10p15.2	Agilent_HUMAN_G3V2	TCONS_00018410	TCONS_00018410	chr10	  3474763	  3474822	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10818_PI429285431	1.5852408	A	1.1907655	A	1.31446460994018	0	lncRNA	12353-1_{1..1558}	lnc-WDR7-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR7-3:1	chr18	 54715433	 54716990	+	lnc-WDR7-3	lnc-WDR7-3:1	XLOC_012690	linc-ST8SIA3-1	NA	NA	NA	inter
CUST_5591_PI429285431	3.2114375	P	2.8116305	P	1.31933140223429	0	lncRNA	5520-1_{1..511}	"transcript_id ""ENST00000568560.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568560.1"" | genecode_v17"	chr16	 66543340	 66543850	+	ENSG00000260755.1	ENST00000568560.1	RP11-403P17.3	RP11-403P17.3-001	TK2	NA	chr16:66541906-66553951	inter
CUST_31960_PI429285431	4.924312	P	5.426216	P	0.706174190963341	0	lncRNA	33683-1_{1..839}	n338517|CR624623|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|915|NULL|-1.0573800|-0.3231753	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338517|CR624623|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|915|NULL|-1.0573800|-0.3231753	chr1	212731174	212732012	-	NA	NA	NA	NA	ATF3	NA	chr1:212738697-212742013	inter
CUST_51287_PI429285431	0.91529274	A	0.9183291	A	0.997897568837857	0	lncRNA	54893-1_{1..979}	hg19_lincRNAsTranscripts_TCONS_l2_00009494 range=chr15:32698803-32726836 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009494 range=chr15:32698803-32726836 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 32698803	 32699781	-	NA	NA	NA	NA	LOC653125	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60chr15:32688803-32695493"	NA	inter
CUST_29584_PI429285431	3.915732	P	4.0241804	P	0.927585131530201	0	lncRNA	31344-1_{1..582}	n333088|AF285097|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076255|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076255|-0.9722290|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333088|AF285097|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076255|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076255|-0.9722290|-1.0000000	chr20	 62708239	 62708820	-	NA	NA	NA	NA	OPRL1	NA	chr20:62711471-62721161	inner
LNCA_21_P0014329	6.58661	P	5.4271936	P	2.23367052741103	0	lncRNA	XR_109307	XR_109307	XR_109307	NA	Hs.729295	LOC100505792	uncharacterized LOC100505792	NA	THC2491729	NA	"PREDICTED: Homo sapiens hypothetical LOC100505792 (LOC100505792), miscRNA [XR_109307]"	chr16:58193554-58193495	hs|16q21	Agilent_HUMAN_G3V2	XR_109307	XR_109307	chr16	 58193495	 58193554	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33600_PI429285431	0.922522	A	0.9284708	A	0.995885095568561	0	lncRNA	35165-1_{1..335}	n340356|AF009319|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2817|NULL|-1.4139200|-0.4881752	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340356|AF009319|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2817|NULL|-1.4139200|-0.4881752	chr5	  9297866	  9298200	-	NA	NA	NA	NA	SEMA5A	NA	chr5:9287866-9308201	inner
CUST_14162_PI429285431	4.046654	P	3.9736958	P	1.05187130231433	0	lncRNA	15813-1_{1..731}	lnc-ACCN1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACCN1-1:6	chr17	 32508985	 32509715	-	lnc-ACCN1-1	lnc-ACCN1-1:6	XLOC_012440	linc-ACCN1-2	NA	NA	NA	inter
CUST_29591_PI429285431	6.149951	P	6.429642	P	0.823767434925274	0	lncRNA	31352-1_{1..665}	n333102|AF316398|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077162|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077162|2.8038900|-0.0897683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333102|AF316398|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077162|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077162|2.8038900|-0.0897683	chr19	 45395676	 45396340	+	NA	NA	NA	NA	PVRL2	NA	chr19:45385676-45392485	inner
CUST_30085_PI429285431	3.1767173	P	1.262362	A	3.76945330415811	0	lncRNA	31857-1_{1..482}	n334612|U83660|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221836|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221836|1.7322100|-0.3107569	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334612|U83660|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221836|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221836|1.7322100|-0.3107569	chr13	 95673860	 95674341	-	NA	NA	NA	NA	ABCC4	NA	chr13:95672083-95706687	inner
CUST_5430_PI429285431	1.1037784	A	0.9855691	A	1.08538682371884	0	lncRNA	5364-1_{1..764}	"transcript_id ""ENST00000571619.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000571619.1"" | genecode_v17"	chr16	 13340173	 13340936	+	ENSG00000262801.1	ENST00000571619.1	U91319.1	U91319.1-001	SHISA9	NA	chr16:13330173-13334273	inter
CUST_5372_PI429285431	7.901255	P	8.075614	P	0.886161159557254	0	lncRNA	5309-1_{1..389}	"transcript_id ""ENST00000557903.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557903.1"" | genecode_v17"	chr15	101708735	101709123	+	ENSG00000259182.1	ENST00000557903.1	RP11-424I19.2	RP11-424I19.2-002	CHSY1	NA	chr15:101715928-101721026	inter
CUST_23928_PI429285431	0.9208746	A	0.98019284	A	0.959717536323358	0	lncRNA	25485-1_{1..488}	lnc-GSX2-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GSX2-4:3	chr4	 54415524	 54416011	+	lnc-GSX2-4	lnc-GSX2-4:3	ENSG00000250930.1	LNX1-AS1	LNX1	NA	chr4:54405524-54425745	inner
CUST_2548_PI429285431	1.7094862	A	2.432906	A	0.605660067675281	0	lncRNA	2536-1_{1..674}	"transcript_id ""ENST00000445346.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445346.1"" | genecode_v17"	chr6	 68936864	 68937537	-	ENSG00000226497.1	ENST00000445346.1	RP11-406O16.1	RP11-406O16.1-001	NA	NA	NA	inter
CUST_4299_PI429285431	1.0856904	A	1.7081895	A	0.649544782493881	0	lncRNA	4254-1_{1..547}	"transcript_id ""ENST00000545188.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000545188.1"" | genecode_v17"	chr12	 66038177	 66038723	+	ENSG00000256915.1	ENST00000545188.1	RP11-221N13.4	RP11-221N13.4-002	NA	NA	NA	inter
CUST_14943_PI429285431	5.974446	P	6.0588884	P	0.943148991500325	0	lncRNA	16607-1_{1..347}	lnc-RP11-43D2.2.1-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-43D2.2.1-10:1	chr5	124310969	124311315	+	lnc-RP11-43D2.2.1-10	lnc-RP11-43D2.2.1-10:1	XLOC_004536	linc-GRAMD3-4	NA	NA	NA	inter
CUST_43336_PI429285431	2.324306	A	2.1964417	A	1.09267495718161	0	lncRNA	48163-1_{1..527}	ENST00000598557 havana:sense_intronic chromosome:GRCh37:19:36031641:36032480:1 gene:ENSG00000267875 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000598557 havana:sense_intronic chromosome:GRCh37:19:36031641:36032480:1 gene:ENSG00000267875 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 36031641	 36032167	+	ENSG00000267875	ENST00000598557	NA	NA	ATP4A	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-17.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50chr19:36041095-36042480"	NA	inner
CUST_5778_PI429285431	7.1044827	P	7.3214736	P	0.860358057422657	0	lncRNA	5700-1_{1..404}	"transcript_id ""ENST00000582990.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582990.1"" | genecode_v17"	chr17	 21360746	 21361149	+	ENSG00000264023.1	ENST00000582990.1	RP11-728E14.2	RP11-728E14.2-002	NA	NA	NA	inter
CUST_3490_PI429285431	0.918604	A	0.92688423	A	0.99427702091593	0	lncRNA	3461-1_{1..395}	"transcript_id ""ENST00000419620.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419620.1"" | genecode_v17"	chr9	 98361827	 98362221	-	ENSG00000229345.1	ENST00000419620.1	RP11-332M4.1	RP11-332M4.1-001	NA	NA	NA	inter
CUST_16710_PI429285431	0.91871476	A	0.9085261	A	1.00708723738528	0	lncRNA	18416-1_{1..565}	lnc-HRCT1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HRCT1-3:1	chr9	 35937014	 35937578	+	lnc-HRCT1-3	lnc-HRCT1-3:1	XLOC_007342	linc-RECK-2	OR2S2	NA	chr9:35943207-35947111	inter
CUST_35023_PI429285431	0.9258719	A	0.92251045	A	1.00233269610193	0	lncRNA	36436-1_{1..342}	n341962|AF085952|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4443|NULL|-1.3336500|-0.5490519	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341962|AF085952|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4443|NULL|-1.3336500|-0.5490519	chr12	 69877506	 69877847	+	NA	NA	NA	NA	FRS2	NA	chr12:69867506-69887848	inner
CUST_35800_PI429285431	2.8666592	A	3.641294	P	0.584536573593501	0	lncRNA	37208-3_{6001..9000}	n344478|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_26|NULL|-1.2862300|-0.2792485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344478|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_26|NULL|-1.2862300|-0.2792485	chr14	101298452	101301451	+	NA	NA	NA	NA	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10"	NA	inter
CUST_34975_PI429285431	1.431304	A	1.6244872	A	0.874673687797001	0	lncRNA	36392-1_{1..2270}	n341900|AF116620|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4381|NULL|-1.0218500|-0.3395794	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341900|AF116620|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4381|NULL|-1.0218500|-0.3395794	chr12	 46752133	 46754402	+	NA	NA	NA	NA	SLC38A2	NA	chr12:46751971-46764400	inner
CUST_4692_PI429285431	0.90608954	A	0.9039628	A	1.00147523091891	0	lncRNA	4639-1_{1..414}	"transcript_id ""ENST00000439008.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439008.1"" | genecode_v17"	chr13	110053043	110053456	+	ENSG00000229792.1	ENST00000439008.1	RP11-460H14.1	RP11-460H14.1-001	NA	NA	NA	inter
LNCA_21_P0008031	5.1207175	P	5.0182333	P	1.07362055646609	0	lncRNA	TCONS_00021722	NA	NA	NA	NA	XLOC_010305	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010305), lincRNA [TCONS_00021722]"	chr13:23508710-23508769	hs|13q12.12	Agilent_HUMAN_G3V2	TCONS_00021722	TCONS_00021722	chr13	 23508710	 23508769	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51055_PI429285431	1.3764906	A	1.0064348	A	1.29240281672638	0	lncRNA	54695-1_{1..1810}	hg19_lincRNAsTranscripts_TCONS_l2_00007081 range=chr13:24513719-24528358 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007081 range=chr13:24513719-24528358 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 24513719	 24515528	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5884_PI429285431	8.125745	P	8.001622	P	1.08984502528233	0	lncRNA	5815-1_{1..304}	"transcript_id ""ENST00000510360.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510360.2"" | genecode_v17"	chr17	 47438551	 47438854	+	ENSG00000248714.2	ENST00000510360.2	RP11-1079K10.3	RP11-1079K10.3-001	ZNF652	NA	chr17:47428551-47439835	inner
CUST_18576_PI429285431	1.2862077	A	0.9033625	A	1.30391081918593	0	lncRNA	20284-1_{1..982}	lnc-NR1I2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR1I2-1:3	chr3	119817561	119818542	+	lnc-NR1I2-1	lnc-NR1I2-1:3	ENSG00000242622	RP11-18H7.1	GSK3B	NA	chr3:119807561-119813264	inter
CUST_38859_PI429285431	7.007086	P	6.966842	P	1.02828772410597	0	lncRNA	39849-1_{1..2273}	n384725|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ksb.2||-0.1901220|-0.2805364	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n384725|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ksb.2||-0.1901220|-0.2805364	chr5	118332006	118334278	-	NA	NA	NA	NA	DTWD2	"hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50chr5:118322006-118324240"	NA	inter
LNCA_21_P0009414	1.7218829	A	0.92202866	A	1.74092522657651	0	lncRNA	TCONS_00026157	NA	NA	NA	NA	XLOC_012572	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012572), lincRNA [TCONS_00026157]"	chr17:72056123-72056064	hs|17q25.1	Agilent_HUMAN_G3V2	TCONS_00026157	TCONS_00026157	chr17	 72056064	 72056123	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38605_PI429285431	1.9863744	A	2.0472283	A	0.958696519626308	0	lncRNA	39612-1_{1..3000}	n383718|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tji.1||0.3068400|-0.2549738	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383718|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tji.1||0.3068400|-0.2549738	chr2	113963502	113966501	+	NA	NA	NA	NA	PAX8	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80chr2:113973574-113976973"	NA	inter
CUST_7783_PI429285431	1.3195456	A	0.9049981	A	1.33288055473744	0	lncRNA	9407-1_{1..549}	lnc-NSG1.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NSG1.1-1:3	chr4	  4592801	  4593349	+	lnc-NSG1.1-1	lnc-NSG1.1-1:3	ENSG00000247708	RP11-323F5.2	NA	NA	NA	inter
CUST_37595_PI429285431	1.1073799	A	0.91643035	A	1.14151478848396	0	lncRNA	38695-1_{1..3000}	n346072|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1622|NULL|-1.5443600|-0.1889036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n346072|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1622|NULL|-1.5443600|-0.1889036	chr6	170188940	170191939	-	NA	NA	NA	NA	C6orf70	NA	chr6:170178940-170181617	inter
CUST_35221_PI429285431	0.9224204	A	0.91515243	A	1.0050504838278	0	lncRNA	36620-2_{3001..3418}	n342208|BC047459|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4698|NULL|1.7473900|-0.2308340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342208|BC047459|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4698|NULL|1.7473900|-0.2308340	chr15	 21148766	 21149183	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43301_PI429285431	0.9832085	A	1.3258876	A	0.788575558145096	0	lncRNA	48119-1_{1..468}	ENST00000586394 havana:sense_overlapping chromosome:GRCh37:19:12050774:12064196:1 gene:ENSG00000267274 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000586394 havana:sense_overlapping chromosome:GRCh37:19:12050774:12064196:1 gene:ENSG00000267274 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	chr19	 12050774	 12051241	+	ENSG00000267274	ENST00000586394	NA	NA	ZNF700	NA	chr19:12040774-12061578	inner
CUST_6550_PI429285431	1.4450116	A	1.9875107	A	0.68658055324855	0	lncRNA	6498-1_{1..293}	"transcript_id ""ENST00000600597.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600597.1"" | genecode_v17"	chr19	 48983183	 48983475	+	ENSG00000269751.1	ENST00000600597.1	CTC-273B12.8	CTC-273B12.8-001	LMTK3	NA	chr19:48988528-48994136	inner
CUST_21580_PI429285431	5.048658	P	5.3487515	P	0.812199756584162	0	lncRNA	23194-1_{1..1147}	lnc-RMND5A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RMND5A-1:3	chr2	 86844299	 86845445	+	lnc-RMND5A-1	lnc-RMND5A-1:3	ENSG00000228363.1	AC015971.2	RNF103-VPS24	"hg19_refFlat_RNF103:range=chr2:86830966-868509855'pad=0,hg19_refFlat_RNF103:range=chr2:86830966-868509855'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_RNF103:range=chr2:86830966-868500095'pad=0,hg19_refFlat_RNF103:range=chr2:86830966-868500095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70chr2:86834299-86855178"	NA	inner
CUST_29425_PI429285431	4.198412	P	4.603593	P	0.755141547051753	0	lncRNA	31181-1_{1..429}	n332801|AF055709|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064669|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064669|2.1111700|-0.2954455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332801|AF055709|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064669|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064669|2.1111700|-0.2954455	chr1	160789092	160789520	+	NA	NA	NA	NA	CD244	NA	chr1:160799950-160807606	inner
CUST_45641_PI429285431	1.0401903	A	0.92068803	A	1.08636000350655	0	lncRNA	50020-2_{3001..3972}	"gi|226061010|ref|NR_027429.1| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|226061010|ref|NR_027429.1| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 2, non-coding RNA"	Chr10	 81808989	 81809960	-	219347	NR_027429.1	NA	NA	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
CUST_29540_PI429285431	16.038908	P	15.931423	P	1.07734849444147	0	lncRNA	31299-1_{1..623}	n333015|AF147412|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071485|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071485|1.6336600|-0.2534145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333015|AF147412|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071485|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071485|1.6336600|-0.2534145	chr6	157297612	157298234	+	NA	NA	NA	NA	ARID1B	NA	chr6:157287612-157308235	inner
CUST_12406_PI429285431	1.5455637	A	1.4174142	A	1.09289098461183	0	lncRNA	14018-1_{1..910}	lnc-FOXA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXA2-1:1	chr20	 22588586	 22589495	-	lnc-FOXA2-1	lnc-FOXA2-1:1	XLOC_013685	linc-FOXA2-2	NA	NA	NA	inter
CUST_49245_PI429285431	0.9010182	A	0.89589775	A	1.00355553143967	0	lncRNA	53066-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00022197 range=chr5:10564450-10657959 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022197 range=chr5:10564450-10657959 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 10567450	 10570449	+	NA	NA	NA	NA	ANKRD33B	NA	chr5:10564435-10657928	inner
CUST_38578_PI429285431	0.9211543	A	0.92136914	A	0.999851095347127	0	lncRNA	39589-1_{1..391}	n383557|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002qke.2||-0.2339420|-0.2076684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383557|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002qke.2||-0.2339420|-0.2076684	chr19	 55775354	 55775744	-	NA	NA	NA	NA	PPP6R1	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.72;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20chr19:55765354-55770038"	NA	inner
CUST_22459_PI429285431	8.714636	P	9.012783	P	0.813296325004085	0	lncRNA	24047-1_{1..527}	lnc-GTPBP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTPBP1-1:2	chr22	 39134870	 39135396	+	lnc-GTPBP1-1	lnc-GTPBP1-1:2	ENSG00000230149.2	RP3-508I15.19	GTPBP1	"hg19_refFlat_SUN2:range=chr22:39132272-391486335'pad=0,hg19_refFlat_SUN2:range=chr22:39132272-391486335'pad=0 3'pad=0 strand=- repeatMasking=none,-101.30chr22:39124870-39129592"	NA	inner
CUST_1134_PI429285431	2.5779676	A	2.430886	A	1.10732721403717	0	lncRNA	1123-1_{1..568}	"transcript_id ""ENST00000421624.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421624.1"" | genecode_v17"	chr2	151451616	151452183	-	ENSG00000232359.1	ENST00000421624.1	AC104777.1	AC104777.1-001	NA	NA	NA	inter
CUST_12659_PI429285431	0.9248714	A	0.9263704	A	0.998961511978639	0	lncRNA	14275-1_{1..239}	lnc-DCAF17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCAF17-1:1	chr2	172347258	172347496	+	lnc-DCAF17-1	lnc-DCAF17-1:1	XLOC_001752	linc-CYBRD1-2	DCAF17	NA	chr2:172337258-172341562	inter
CUST_11652_PI429285431	1.6945921	A	0.9279245	A	1.70133542255882	0	lncRNA	13229-1_{1..277}	lnc-MYO3A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYO3A-1:1	chr10	 26194298	 26194574	+	lnc-MYO3A-1	lnc-MYO3A-1:1	XLOC_008418	linc-MYO3A-1	NA	NA	NA	inter
CUST_9777_PI429285431	0.8964491	A	0.8972418	A	0.999450693154247	0	lncRNA	11294-1_{1..2264}	lnc-EGFL7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EGFL7-2:1	chr9	139505899	139508162	+	lnc-EGFL7-2	lnc-EGFL7-2:1	XLOC_007614	linc-EGFL7-2	NA	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-22.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20"	NA	inter
CUST_8873_PI429285431	0.9285036	A	0.9131937	A	1.01066852114836	0	lncRNA	10410-1_{1..2990}	lnc-PPP4C-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PPP4C-2:2	chr16	 30114778	 30117767	+	lnc-PPP4C-2	lnc-PPP4C-2:2	ENSG00000250616	AC012645.1	MAPK3	"hg19_refFlat_GDPD3:range=chr16:30116193-301247995'pad=0,hg19_refFlat_GDPD3:range=chr16:30116193-301247995'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90chr16:30125426-30126777"	NA	inner
CUST_26571_PI429285431	1.2166663	A	0.8987738	A	1.24650830933964	0	lncRNA	28075-1_{1..956}	lnc-SERINC5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SERINC5-1:2	chr5	 79378183	 79379138	-	lnc-SERINC5-1	lnc-SERINC5-1:2	ENSG00000249825.1	CTD-2201I18.1	THBS4	NA	chr5:79368183-79379110	inner
CUST_9098_PI429285431	3.2278333	A	3.3479486	A	0.920114112286163	0	lncRNA	10620-1_{1..3000}	lnc-ZNF708-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF708-1:1	chr19	 21608886	 21611885	-	lnc-ZNF708-1	lnc-ZNF708-1:1	ENSG00000196686	ENST00000341265	ZNF493	"hg19_refFlat_ZNF493:range=chr19:21580040-216077865'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-216077865'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_ZNF493:range=chr19:21605846-216077865'pad=0,hg19_refFlat_ZNF493:range=chr19:21605846-216077865'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF431:range=chr19:21324987-213668375'pad=0,hg19_refFlat_ZNF431:range=chr19:21324987-213668375'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70chr19:21598886-21610297"	NA	inner
CUST_37081_PI429285431	7.0581493	P	7.4061613	P	0.785665981654482	0	lncRNA	38208-1_{1..2112}	n345525|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1074|NULL|-1.3533500|-0.2914409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345525|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1074|NULL|-1.3533500|-0.2914409	chr2	 46908200	 46910311	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50014_PI429285431	1.4130845	A	0.9268777	A	1.40075709499296	0	lncRNA	53751-1_{1..280}	hg19_lincRNAsTranscripts_TCONS_l2_00027549 range=chr8:833732-860568 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027549 range=chr8:833732-860568 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	   833732	   834011	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3316903	9.806184	P	9.529891	P	1.21107901958622	0	lncRNA	ENST00000519753	XR_110873	XR_110873	NA	NA	NA	NA	ENST00000519753	THC2524368	NA	"PREDICTED: Homo sapiens hypothetical LOC100128750 (LOC100128750), miscRNA [XR_110873]"	chr8:30240735-30240676	hs|8p12	Agilent_HUMAN_G3V2	ENST00000519753	ENST00000519753	chr8	 30240676	 30240735	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10232_PI429285431	1.8580451	A	0.8919503	A	1.95354542186571	0	lncRNA	11756-1_{1..356}	lnc-MSI2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MSI2-2:1	chr17	 55282121	 55282476	+	lnc-MSI2-2	lnc-MSI2-2:1	XLOC_012258	linc-MSI2	NA	NA	NA	inter
CUST_37802_PI429285431	9.970692	P	9.838127	P	1.09624100123495	0	lncRNA	38894-1_{1..732}	n346312|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1862|NULL|-1.7080100|-0.2460797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346312|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1862|NULL|-1.7080100|-0.2460797	chr17	 19349404	 19350135	+	NA	NA	NA	NA	NA	"hg19_refFlat_RPS2:range=chr16:2012099-20146265'pad=0,hg19_refFlat_RPS2:range=chr16:2012099-20146265'pad=0 3'pad=0 strand=- repeatMasking=none,-107.80"	NA	inter
CUST_35700_PI429285431	9.010415	P	8.295197	P	1.64173127446518	0	lncRNA	37120-1_{1..1044}	n342864|CR615453|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5368|NULL|1.0026000|-0.2929573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342864|CR615453|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5368|NULL|1.0026000|-0.2929573	chr9	 68726484	 68727527	+	NA	NA	NA	NA	LOC100652863	NA	chr9:68726465-68750959	inter
CUST_4232_PI429285431	1.5456294	A	2.3170328	A	0.585847306902727	0	lncRNA	4191-1_{1..256}	"transcript_id ""ENST00000553006.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553006.1"" | genecode_v17"	chr12	 43359925	 43360180	+	ENSG00000257849.1	ENST00000553006.1	RP11-547C5.1	RP11-547C5.1-001	NA	NA	NA	inter
CUST_4533_PI429285431	1.105454	A	0.89525086	A	1.15685106391413	0	lncRNA	4481-1_{1..532}	"transcript_id ""ENST00000539209.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539209.1"" | genecode_v17"	chr12	131851205	131851736	+	ENSG00000256484.1	ENST00000539209.1	RP13-507P19.1	RP13-507P19.1-001	NA	NA	NA	inter
CUST_33719_PI429285431	0.9001027	A	0.8951584	A	1.00343300692112	0	lncRNA	35278-1_{1..2488}	n340497|AK090694|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2958|NULL|-1.0966500|-0.3170054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340497|AK090694|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2958|NULL|-1.0966500|-0.3170054	chr5	 71735725	 71738212	-	NA	NA	NA	NA	ZNF366	NA	chr5:71739234-71748214	inter
CUST_214_PI429201921	2.741294	A	3.0338178	A	0.816472500216413	0	lncRNA	169-1_{1..3000}	TC18000746.hg.1	TCONS_00026194-XLOC_012701 // Rinn lincRNAs // linc-KIAA1468-2 chr18:+:59415408-59420917 // chr18 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr18:+:59415408-59420917	NA	Affy_HUMAN_HTA2.0	TCONS_00026194-XLOC_012701	linc-KIAA1468-2	chr18	 59415408	 59420917	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36781_PI429285431	1.2493519	A	1.2506541	A	0.999097790976995	0	lncRNA	37953-1_{1..2256}	n345260|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_809|NULL|-1.3181700|-0.2548064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345260|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_809|NULL|-1.3181700|-0.2548064	chr14	 58745015	 58747270	+	NA	NA	NA	NA	PSMA3	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40chr14:58735015-58738727"	NA	inter
LNCA_21_P0011600	8.363518	P	8.500837	P	0.909207191178943	0	lncRNA	TCONS_l2_00011390	NA	NA	NA	NA	XLOC_l2_006155	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006155), lincRNA [TCONS_l2_00011390]"	chr17:60214478-60214419	hs|17q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00011390	TCONS_l2_00011390	chr17	 60214419	 60214478	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30420_PI429285431	1.2625475	A	1.4869481	A	0.855950575673979	0	lncRNA	32200-1_{1..680}	n335554|CR407610|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267107|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267107|-0.6127530|-0.1976610	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335554|CR407610|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267107|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267107|-0.6127530|-0.1976610	chr2	 73868075	 73868754	+	NA	NA	NA	NA	NAT8	"hg19_refFlat_NAT8:range=chr2:73868072-738687555'pad=0,hg19_refFlat_NAT8:range=chr2:73868072-738687555'pad=0 3'pad=0 strand=- repeatMasking=none,-101.00;hg19_refFlat_NAT8B:range=chr2:73927749-739284325'pad=0,hg19_refFlat_NAT8B:range=chr2:73927749-739284325'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70chr2:73867850-73869537"	NA	inner
CUST_3252_PI429285431	3.2824411	P	3.002284	A	1.21432710943015	0	lncRNA	3231-1_{1..408}	"transcript_id ""ENST00000518612.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518612.1"" | genecode_v17"	chr8	102399527	102399934	-	ENSG00000253644.1	ENST00000518612.1	KB-1930G5.3	KB-1930G5.3-001	NA	NA	NA	inter
CUST_25834_PI429285431	1.4574804	A	2.14032	A	0.622937962680634	0	lncRNA	27355-1_{1..3000}	lnc-ZNF217-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF217-2:1	chr20	 52029098	 52032097	-	lnc-ZNF217-2	lnc-ZNF217-2:1	ENSG00000231703.2	RP4-669H2.1	TSHZ2	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30chr20:52019098-52039448"	NA	inner
LNCA_21_P0006839	0.9246545	A	0.91516775	A	1.00659738148958	0	lncRNA	TCONS_00018133	NA	NA	NA	NA	XLOC_008408	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008408), lincRNA [TCONS_00018133]"	chr10:20898838-20898897	hs|10p12.31	Agilent_HUMAN_G3V2	TCONS_00018133	TCONS_00018133	chr10	 20898838	 20898897	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36097_PI429285431	3.3446355	P	3.1936975	P	1.11029111770356	0	lncRNA	37394-1_{1..3000}	n344679|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_228|NULL|-1.3112000|-0.2416377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344679|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_228|NULL|-1.3112000|-0.2416377	chr17	 70396859	 70399858	-	NA	NA	NA	NA	NA	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70"	NA	inter
CUST_13793_PI429285431	5.123721	P	5.272338	P	0.902114835865784	0	lncRNA	15435-1_{1..334}	lnc-NEMF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NEMF-1:1	chr14	 50331054	 50331387	-	lnc-NEMF-1	lnc-NEMF-1:1	XLOC_011016	linc-SDCCAG1-2	NA	NA	NA	inter
CUST_4719_PI429285431	5.1531224	P	5.678504	P	0.694775314095272	0	lncRNA	4665-1_{1..413}	"transcript_id ""ENST00000546389.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546389.1"" | genecode_v17"	chr14	 19655782	 19656194	+	ENSG00000225210.5	ENST00000546389.1	AL589743.1	AL589743.1-016	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_932_PI429285431	1.1122307	A	1.8178278	A	0.61318865069786	0	lncRNA	922-1_{1..420}	"transcript_id ""ENST00000415342.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415342.1"" | genecode_v17"	chr2	 69927324	 69927743	-	ENSG00000231024.1	ENST00000415342.1	AC092431.3	AC092431.3-001	NA	NA	NA	inter
CUST_16801_PI429285431	0.9015693	A	0.8971094	A	1.00309615031349	0	lncRNA	18509-1_{1..2713}	lnc-TSTD2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSTD2-3:1	chr9	100174140	100176852	-	lnc-TSTD2-3	lnc-TSTD2-3:1	XLOC_007796	linc-ZNF322B-2	TDRD7	"hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90chr9:100174302-100184237"	NA	inter
CUST_45132_PI429285431	6.368362	P	6.691669	P	0.799235737940111	0	lncRNA	49612-1_{1..1596}	"gi|341915414|ref|XR_132725.1| PREDICTED: Homo sapiens uncharacterized LOC100507530 (LOC100507530), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915414|ref|XR_132725.1| PREDICTED: Homo sapiens uncharacterized LOC100507530 (LOC100507530), misc_RNA"	Chr8	  6473124	  6474719	-	100507530	XR_132725.2	NA	NA	NA	NA	NA	inter
CUST_18699_PI429285431	1.0559871	A	0.9181924	A	1.10022203320196	0	lncRNA	20397-1_{1..485}	lnc-CCNJ-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCNJ-1:6	chr10	 97911173	 97911657	+	lnc-CCNJ-1	lnc-CCNJ-1:6	ENSG00000177853	ZNF518A	ZNF518A	NA	chr10:97901173-97921323	inner
CUST_40142_PI429285431	5.1271725	P	5.729521	P	0.658680844522379	0	lncRNA	40980-1_{1..1613}	n407758|NR_027277|lncRNA|Homosapiens||RefGeneNoncode|NR_027277||4.0291100|-0.1527842	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407758|NR_027277|lncRNA|Homosapiens||RefGeneNoncode|NR_027277||4.0291100|-0.1527842	chr4	 40044536	 40046148	-	NA	NA	NA	NA	N4BP2	"hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10chr4:40058524-40068819"	NA	inner
CUST_14522_PI429285431	14.743704	P	14.7696	P	0.982210397613638	0	lncRNA	16189-1_{1..829}	lnc-NLGN2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NLGN2-1:2	chr17	  7311331	  7312159	+	lnc-NLGN2-1	lnc-NLGN2-1:2	XLOC_012097	linc-NLGN2	C17orf61	NA	chr17:7306293-7307450	inter
CUST_49634_PI429285431	1.2331035	A	1.5090976	A	0.825881042425798	0	lncRNA	53418-1_{1..841}	hg19_lincRNAsTranscripts_TCONS_l2_00027297 range=chr7:25633838-25702522 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027297 range=chr7:25633838-25702522 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 25633838	 25634678	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48836_PI429285431	1.3505219	A	2.0235305	A	0.62719736348463	0	lncRNA	52674-1_{1..1960}	hg19_lincRNAsTranscripts_TCONS_l2_00018485 range=chr3:28616712-28800288 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018485 range=chr3:28616712-28800288 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	 28616712	 28618671	+	NA	NA	NA	NA	LOC100652807	NA	chr3:28616925-28617911	inter
CUST_11638_PI429285431	0.98890543	A	1.0414345	A	0.96424450873325	0	lncRNA	13215-1_{1..357}	lnc-SLC38A9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC38A9-2:1	chr5	 54899295	 54899651	-	lnc-SLC38A9-2	lnc-SLC38A9-2:1	XLOC_004826	linc-PPAP2A-1	NA	NA	NA	inter
CUST_41055_PI429285431	0.9027586	A	1.1134273	A	0.864136604654051	0	lncRNA	41716-1_{1..578}	n411737|NR_045023|lncRNA|Homosapiens||RefGeneNoncode|NR_045023||0.6727020|-0.2291486	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411737|NR_045023|lncRNA|Homosapiens||RefGeneNoncode|NR_045023||0.6727020|-0.2291486	chr17	 16342300	 16342877	+	NA	NA	NA	NA	C17orf76	NA	chr17:16345328-16383962	inner
CUST_20215_PI429285431	3.0740762	A	2.6275275	A	1.36277624058368	0	lncRNA	21859-1_{1..1597}	lnc-AC019294.2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC019294.2-1:2	chr15	 76050881	 76052477	+	lnc-AC019294.2-1	lnc-AC019294.2-1:2	ENSG00000260288.1	RP11-24M17.4	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30"	NA	inter
CUST_41806_PI429285431	0.9635486	A	1.4590244	A	0.709327703648702	0	lncRNA	43393-1_{1..86}	ENST00000362165 ncrna:miRNA chromosome:GRCh37:5:167987897:167987982:-1 gene:ENSG00000199035 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362165 ncrna:miRNA chromosome:GRCh37:5:167987897:167987982:-1 gene:ENSG00000199035 gene_biotype:miRNA transcript_biotype:miRNA	chr5	167987897	167987982	-	ENSG00000199035	ENST00000362165	NA	NA	PANK3	NA	chr5:167982628-167997982	inner
CUST_37023_PI429285431	2.6306276	A	1.6922615	A	1.91635667168465	0	lncRNA	38161-1_{1..641}	n345478|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1027|NULL|-1.3499800|-0.2853585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345478|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1027|NULL|-1.3499800|-0.2853585	chr1	181086133	181086773	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26690_PI429285431	5.3408985	P	6.0167637	P	0.625956713636365	0	lncRNA	28199-1_{1..833}	n765|AF071169|Hoxa11-ASRNA|Homosapiens|Hoxa11-AS|NONCODEv2.0|n765|NULL|1.3610500|-0.1075540	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n765|AF071169|Hoxa11-ASRNA|Homosapiens|Hoxa11-AS|NONCODEv2.0|n765|NULL|1.3610500|-0.1075540	chr7	 27228219	 27229051	+	NA	NA	NA	NA	HOXA10	NA	chr7:27218219-27219880	inter
CUST_50247_PI429285431	1.1394359	A	1.2485535	A	0.927154967144588	0	lncRNA	53971-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00029345 range=chr9:68423755-68454933 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029345 range=chr9:68423755-68454933 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 68423755	 68426754	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33116_PI429285431	1.3753366	A	0.9280628	A	1.36346134546586	0	lncRNA	34715-1_{1..1099}	n339804|BC032041|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2251|NULL|4.9061800|-0.2847470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339804|BC032041|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2251|NULL|4.9061800|-0.2847470	chr18	 14089933	 14091031	+	NA	NA	NA	NA	ZNF519	NA	chr18:14079933-14101018	inter
CUST_23694_PI429285431	1.5356405	A	1.1099491	A	1.34321607405966	0	lncRNA	25259-1_{1..491}	lnc-DHRS7-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHRS7-2:2	chr14	 60524300	 60524790	-	lnc-DHRS7-2	lnc-DHRS7-2:2	ENSG00000258553.1	RP11-16B13.1	NA	NA	NA	inter
CUST_2038_PI429285431	5.841566	P	5.7599716	P	1.05818685387426	0	lncRNA	2029-1_{1..490}	"transcript_id ""ENST00000511698.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511698.1"" | genecode_v17"	chr5	  1963723	  1964212	-	ENSG00000248597.1	ENST00000511698.1	RP11-259O2.2	RP11-259O2.2-001	NA	NA	NA	inter
CUST_42333_PI429285431	6.669803	P	6.7919364	P	0.918827919361209	0	lncRNA	44987-1_{1..135}	ENST00000384182 ncrna:snoRNA chromosome:GRCh37:5:170793122:170793256:1 gene:ENSG00000206909 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384182 ncrna:snoRNA chromosome:GRCh37:5:170793122:170793256:1 gene:ENSG00000206909 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	170793122	170793256	+	ENSG00000206909	ENST00000384182	NA	NA	NA	NA	NA	inter
CUST_43687_PI429285431	5.5697837	P	3.8732648	P	3.24117945311698	0	lncRNA	48439-1_{1..2656}	"gi|291084644|ref|NR_033393.1| Homo sapiens TROVE domain family, member 2 (TROVE2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|291084644|ref|NR_033393.1| Homo sapiens TROVE domain family, member 2 (TROVE2), transcript variant 6, non-coding RNA"	Chr1	193028552	193031207	+	6738	NR_033393.1	NA	NA	NA	NA	NA	inter
CUST_12697_PI429285431	4.397345	P	4.742106	P	0.787438414525925	0	lncRNA	14314-1_{1..371}	lnc-RALA-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RALA-1:5	chr7	 39822334	 39822704	+	lnc-RALA-1	lnc-RALA-1:5	XLOC_006058	linc-CDK13-1	NA	NA	NA	inter
CUST_28046_PI429285431	7.1025434	P	6.832468	P	1.20587084883072	0	lncRNA	29662-1_{1..604}	n325309|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324138|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324138|-1.1557200|-0.4080388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325309|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324138|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324138|-1.1557200|-0.4080388	chr2	 52453759	 52454362	+	NA	NA	NA	NA	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
CUST_32058_PI429285431	0.91387635	A	0.9123869	A	1.00103294118474	0	lncRNA	33773-1_{1..3000}	n338622|AL137761|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1028|NULL|-1.1110000|-0.3229078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338622|AL137761|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1028|NULL|-1.1110000|-0.3229078	chr2	    38813	    41812	-	NA	NA	NA	NA	FAM110C	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30chr2:38814-46588"	NA	inner
CUST_44516_PI429285431	3.488891	A	3.5534146	A	0.956261037504559	0	lncRNA	49113-1_{1..931}	"gi|397139087|ref|XR_158786.1| PREDICTED: Homo sapiens uncharacterized LOC100996421 (LOC100996421), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139087|ref|XR_158786.1| PREDICTED: Homo sapiens uncharacterized LOC100996421 (LOC100996421), misc_RNA"	NA	NA	NA	NA	NA	XR_158786.1	NA	NA	NA	NA	NA	Unknown
CUST_25362_PI429285431	4.8229413	P	5.212249	P	0.763495892150606	0	lncRNA	26892-1_{1..630}	lnc-NUDCD2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUDCD2-2:4	chr5	162683857	162684486	-	lnc-NUDCD2-2	lnc-NUDCD2-2:4	ENSG00000250061.1	RP11-541P9.3	NA	NA	NA	inter
CUST_3918_PI429285431	1.1769582	A	0.93007094	A	1.18664406324263	0	lncRNA	3888-1_{1..859}	"transcript_id ""ENST00000526978.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526978.1"" | genecode_v17"	chr11	 41540445	 41541303	-	ENSG00000255388.1	ENST00000526978.1	RP11-124G5.3	RP11-124G5.3-002	NA	NA	NA	inter
CUST_32882_PI429285431	0.9284878	A	1.1246647	A	0.872860556386239	0	lncRNA	34509-1_{1..1082}	n339548|BC030741|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1990|NULL|-0.1563520|-0.4390125	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339548|BC030741|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1990|NULL|-0.1563520|-0.4390125	chr3	129526704	129527785	+	NA	NA	NA	NA	TMCC1	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50chr3:129516704-129537779"	NA	inner
CUST_7276_PI429285431	0.9642825	A	0.9295504	A	1.0243665865087	0	lncRNA	8134-1_{1..349}	"transcript_id ""ENST00000516921.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516921.1"" | genecode_v17"	chr10	 87318481	 87318829	+	ENSG00000252730.1	ENST00000516921.1	RN7SKP84	RN7SKP84-201	NA	NA	NA	inter
CUST_12922_PI429285431	4.965953	P	5.339324	P	0.771976587914495	0	lncRNA	14550-1_{1..319}	lnc-CDK20-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK20-4:2	chr9	 90728169	 90728487	-	lnc-CDK20-4	lnc-CDK20-4:2	XLOC_007764	linc-CDK20-1	NA	NA	NA	inter
CUST_27328_PI429285431	0.97218764	A	0.95354724	A	1.01300437154809	0	lncRNA	28888-1_{1..352}	n324483|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041156|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041156|-1.3443000|-0.3861122	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324483|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041156|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041156|-1.3443000|-0.3861122	chr6	 72095365	 72095716	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37028_PI429285431	1.0003681	A	1.3448112	A	0.787611946871178	0	lncRNA	38166-1_{1..2906}	n345483|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1032|NULL|-1.3004700|-0.3649930	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345483|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1032|NULL|-1.3004700|-0.3649930	chr1	219443344	219446249	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50"	NA	inter
CUST_16487_PI429285431	7.25108	P	7.2985115	P	0.967657563995803	0	lncRNA	18185-1_{1..1507}	lnc-GINS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GINS2-1:1	chr16	 85733243	 85734749	-	lnc-GINS2-1	lnc-GINS2-1:1	XLOC_012038	linc-GINS2	C16orf74	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70chr16:85741123-85743297"	NA	inter
CUST_12951_PI429285431	7.086276	P	7.5632787	P	0.718468743658397	0	lncRNA	14579-1_{1..959}	lnc-ANKUB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKUB1-1:1	chr3	149740302	149741260	-	lnc-ANKUB1-1	lnc-ANKUB1-1:1	XLOC_003281	linc-PFN2-1	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40"	NA	inter
CUST_12215_PI429285431	0.91548336	A	1.5087942	A	0.662820054966502	0	lncRNA	13818-1_{1..587}	lnc-ZNF133-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF133-1:1	chr20	 18253200	 18253786	+	lnc-ZNF133-1	lnc-ZNF133-1:1	XLOC_013471	linc-ZNF133	NA	"hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20"	NA	inter
CUST_14847_PI429285431	0.9299197	A	0.95331275	A	0.983915925985134	0	lncRNA	16509-1_{1..511}	lnc-BASP1-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BASP1-3:10	chr5	 17412001	 17412511	+	lnc-BASP1-3	lnc-BASP1-3:10	XLOC_004308	linc-PRDM9-8	NA	NA	NA	inter
CUST_10492_PI429285431	3.679176	P	3.433781	P	1.18541728563109	0	lncRNA	12020-1_{1..1551}	lnc-SCD-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCD-1:9	chr10	102142185	102143735	+	lnc-SCD-1	lnc-SCD-1:9	XLOC_008583	linc-WNT8B	NA	NA	NA	inter
CUST_3132_PI429285431	3.0398574	A	3.6177316	P	0.6699502169293	0	lncRNA	3111-1_{1..3000}	"transcript_id ""ENST00000526470.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526470.1"" | genecode_v17"	chr8	 61544114	 61547113	-	ENSG00000228862.3	ENST00000526470.1	RP11-91I20.3	RP11-91I20.3-001	RAB2A	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50chr8:61534114-61536203"	NA	inter
CUST_50685_PI429285431	1.9281559	A	1.4842279	A	1.36030296262014	0	lncRNA	54357-1_{1..1679}	hg19_lincRNAsTranscripts_TCONS_l2_00003545 range=chr10:47654473-47657410 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003545 range=chr10:47654473-47657410 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 47654473	 47656151	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1490_PI429285431	4.161062	P	4.2448955	P	0.943547138448888	0	lncRNA	1477-1_{1..390}	"transcript_id ""ENST00000481334.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000481334.1"" | genecode_v17"	chr3	148029934	148030323	+	ENSG00000242440.1	ENST00000481334.1	RP11-501O2.5	RP11-501O2.5-002	NA	NA	NA	inter
CUST_22407_PI429285431	1.5457408	A	1.9864755	A	0.736759314556612	0	lncRNA	23996-1_{1..572}	lnc-CLSTN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLSTN3-1:1	chr12	  7263967	  7264538	+	lnc-CLSTN3-1	lnc-CLSTN3-1:1	ENSG00000205885.3	ABC12-49244600F4.3	C1RL	"hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10chr12:7253967-7261869"	NA	inter
CUST_15144_PI429285431	3.390001	P	3.6824052	P	0.816540188921224	0	lncRNA	16808-1_{1..778}	lnc-NUMB-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUMB-1:3	chr14	 73930181	 73930958	-	lnc-NUMB-1	lnc-NUMB-1:3	XLOC_011068	linc-NUMB	NUMB	NA	chr14:73920181-73925286	inter
LNCA_21_P0010154	4.189621	P	5.376239	P	0.439331545903202	0	lncRNA	ENST00000458316	NA	BC039446	NA	Hs.651529	XLOC_013900	NA	ENST00000458316	NA	NA	"BROAD Institute lincRNA (XLOC_013900), lincRNA [TCONS_00028827]"	chr21:29475558-29475617	hs|21q21.3	Agilent_HUMAN_G3V2	ENST00000458316	ENST00000458316	chr21	 29475558	 29475617	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25784_PI429285431	1.6513073	A	2.3558972	A	0.613616890365896	0	lncRNA	27306-1_{1..557}	lnc-RNF13-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RNF13-2:4	chr3	149931169	149931725	+	lnc-RNF13-2	lnc-RNF13-2:4	ENSG00000243944.1	RP11-167H9.4	NA	NA	NA	inter
CUST_10525_PI429285431	0.92060816	A	1.0819565	A	0.894188972993203	0	lncRNA	12053-1_{1..950}	lnc-CDH11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CDH11-1:1	chr16	 65210358	 65211307	-	lnc-CDH11-1	lnc-CDH11-1:1	XLOC_011976	linc-CDH11-6	NA	NA	NA	inter
CUST_6328_PI429285431	6.2102327	P	6.578604	P	0.774656535397643	0	lncRNA	6252-1_{1..656}	"transcript_id ""ENST00000589751.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589751.1"" | genecode_v17"	chr19	  9609354	  9610009	+	ENSG00000267273.1	ENST00000589751.1	CTC-543D15.3	CTC-543D15.3-001	ZNF560	NA	chr19:9599354-9609279	inter
CUST_3838_PI429285431	6.769361	P	6.6198425	P	1.10919921463906	0	lncRNA	3805-1_{1..2843}	"transcript_id ""ENST00000456581.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456581.1"" | genecode_v17"	chr10	131864638	131867480	-	ENSG00000237489.2	ENST00000456581.1	RP11-500G10.1	RP11-500G10.1-001	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70"	NA	inter
CUST_17886_PI429285431	3.6802087	P	3.6550415	P	1.01759761893975	0	lncRNA	19620-1_{1..1540}	lnc-BTBD10-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BTBD10-3:10	chr11	 13007587	 13009126	-	lnc-BTBD10-3	lnc-BTBD10-3:10	XLOC_009378	linc-DKK3-3	NA	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50"	NA	inter
CUST_31080_PI429285431	3.583575	P	3.6171584	P	0.976990609038809	0	lncRNA	32871-1_{1..305}	n337332|DQ426868|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391911|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391911|0.3609010|-0.0719034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337332|DQ426868|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391911|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391911|0.3609010|-0.0719034	chr19	 48325159	 48325463	+	NA	NA	NA	NA	CRX	NA	chr19:48325099-48346587	inner
LNCA_21_P0005214	0.96658915	A	0.9274465	A	1.02750303123108	0	lncRNA	ENST00000445093	NA	NA	NA	NA	XLOC_005990	NA	ENST00000445093	NA	NA	"BROAD Institute lincRNA (XLOC_005990), lincRNA [TCONS_00012957]"	chr7:15108206-15108265	hs|7p21.2	Agilent_HUMAN_G3V2	ENST00000445093	ENST00000445093	chr7	 15108206	 15108265	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20170_PI429285431	4.0711794	P	4.8054843	P	0.601107572603714	0	lncRNA	21815-1_{1..632}	lnc-ASB7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ASB7-1:1	chr15	101099518	101100149	+	lnc-ASB7-1	lnc-ASB7-1:1	ENSG00000259540.1	RP11-526I2.1	LINS	"hg19_refFlat_PRKX:range=chrX:3530241-36312945'pad=0,hg19_refFlat_PRKX:range=chrX:3530241-36312945'pad=0 3'pad=0 strand=- repeatMasking=none,-98.70chr15:101109428-101110003"	NA	inter
CUST_1856_PI429285431	2.9398887	A	2.968821	A	0.980145408629016	0	lncRNA	1846-1_{1..698}	"transcript_id ""ENST00000600624.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600624.1"" | genecode_v17"	chr4	118492910	118493607	+	ENSG00000236922.4	ENST00000600624.1	AC092661.1	AC092661.1-003	NA	NA	NA	inter
CUST_9651_PI429285431	1.1196531	A	0.9197799	A	1.14859739911475	0	lncRNA	11169-1_{1..1451}	lnc-PRSS3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRSS3-1:2	chr9	 33748511	 33749961	+	lnc-PRSS3-1	lnc-PRSS3-1:2	XLOC_007326	linc-PRSS3-1	PRSS3	NA	chr9:33750464-33759410	inter
CUST_37445_PI429285431	3.880546	P	4.0920157	P	0.863656959763647	0	lncRNA	38544-1_{1..726}	n345893|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1442|NULL|-1.2919000|-0.0305128	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345893|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1442|NULL|-1.2919000|-0.0305128	chr9	132102622	132103347	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36186_PI429285431	0.91147745	A	1.0629193	A	0.900350189992184	0	lncRNA	37449-3_{6001..6124}	n344737|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_286|NULL|-1.3158900|-0.3715000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344737|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_286|NULL|-1.3158900|-0.3715000	chr13	 83139840	 83139963	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
CUST_3924_PI429285431	0.91705626	A	0.9083475	A	1.00605470853473	0	lncRNA	3894-1_{1..625}	"transcript_id ""ENST00000534059.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534059.1"" | genecode_v17"	chr11	 42090125	 42090749	-	ENSG00000255300.1	ENST00000534059.1	RP11-148I19.1	RP11-148I19.1-002	NA	NA	NA	inter
CUST_12982_PI429285431	5.378198	P	5.017482	P	1.28406301142585	0	lncRNA	14608-1_{1..420}	lnc-ASAP2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASAP2-5:1	chr2	  9148703	  9149122	+	lnc-ASAP2-5	lnc-ASAP2-5:1	XLOC_001334	linc-ASAP2-4	MBOAT2	NA	chr2:9138703-9143876	inter
CUST_44089_PI429285431	7.083784	P	7.5196476	P	0.739251105032349	0	lncRNA	48756-1_{1..864}	"gi|223941918|ref|NR_026926.1| Homo sapiens uncharacterized LOC151174 (LOC151174), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223941918|ref|NR_026926.1| Homo sapiens uncharacterized LOC151174 (LOC151174), transcript variant 2, non-coding RNA"	Chr2	239133754	239134617	-	151174	NR_026926.1	NA	NA	NA	NA	NA	inter
CUST_49419_PI429285431	5.0272226	P	5.236177	P	0.865164035834983	0	lncRNA	53223-3_{6001..6233}	hg19_lincRNAsTranscripts_TCONS_l2_00023267 range=chr5:175602228-175626411 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023267 range=chr5:175602228-175626411 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175608228	175608460	-	NA	NA	NA	NA	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_24381_PI429285431	1.1275246	A	1.1018461	A	1.01795832571218	0	lncRNA	25934-1_{1..523}	lnc-TMEM178-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM178-1:6	chr2	 39681438	 39681960	+	lnc-TMEM178-1	lnc-TMEM178-1:6	ENSG00000231312.2	AC007246.3	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_35989_PI429285431	6.0278573	P	6.1081014	P	0.945897589936365	0	lncRNA	37329-2_{3001..6000}	n344604|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_152|NULL|-1.2887500|-0.3048318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344604|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_152|NULL|-1.2887500|-0.3048318	chrX	 73424503	 73427502	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60"	NA	inter
LNCA_21_P0001458	0.9951217	A	0.9286407	A	1.04715935068121	0	lncRNA	TCONS_00001378	NA	NA	NA	NA	XLOC_000679	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000679), lincRNA [TCONS_00001378]"	chr1:2500252-2500193	hs|1p36.32	Agilent_HUMAN_G3V2	TCONS_00001378	TCONS_00001378	chr1	  2500193	  2500252	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30409_PI429285431	4.617149	P	4.9984884	P	0.767724503226905	0	lncRNA	32189-1_{1..284}	n335539|BC070230|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264188_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264188_08|-1.1194200|-0.3031714	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335539|BC070230|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264188_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264188_08|-1.1194200|-0.3031714	chr6	  4472089	  4472372	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39546_PI429285431	0.92234004	A	1.4495052	A	0.693916915221337	0	lncRNA	40491-1_{1..2515}	n387471|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ewb.1||-0.3050600|-0.1929865	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387471|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ewb.1||-0.3050600|-0.1929865	chr6	  1407785	  1410299	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.82;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60"	NA	inter
CUST_37810_PI429285431	4.208407	P	4.49951	P	0.817276977602377	0	lncRNA	38901-3_{6001..7505}	n346323|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1873|NULL|-1.2968200|-0.1783892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346323|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1873|NULL|-1.2968200|-0.1783892	chr11	  3436942	  3438446	+	NA	NA	NA	NA	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0,hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0,hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0,hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0 3'pad=0 strand=- repeatMasking=none,-101.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0,hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10"	NA	inter
CUST_2331_PI429285431	1.92872	A	1.8215812	A	1.07708999677531	0	lncRNA	2323-1_{1..433}	"transcript_id ""ENST00000514240.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514240.1"" | genecode_v17"	chr5	119581143	119581575	-	ENSG00000251293.1	ENST00000514240.1	CTC-552D5.1	CTC-552D5.1-001	NA	NA	NA	inter
CUST_51654_PI429285431	0.9180755	A	0.9173297	A	1.00051708280851	0	lncRNA	55223-1_{1..2083}	hg19_lincRNAsTranscripts_TCONS_l2_00010917 range=chr17:62926709-62955048 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010917 range=chr17:62926709-62955048 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 62926709	 62928791	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1841_PI429285431	0.9183714	A	0.9172861	A	1.00075255566309	0	lncRNA	1831-1_{1..493}	"transcript_id ""ENST00000503456.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503456.1"" | genecode_v17"	chr4	111524517	111525009	-	ENSG00000250103.1	ENST00000503456.1	RP11-380D23.2	RP11-380D23.2-001	PITX2	NA	chr4:111538579-111546571	inter
CUST_47671_PI429285431	6.575856	P	6.6840334	P	0.927759388164177	0	lncRNA	51653-1_{1..537}	"gi|387527995|ref|NR_046502.1| Homo sapiens long intergenic non-protein coding RNA 278 (LINC00278), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|387527995|ref|NR_046502.1| Homo sapiens long intergenic non-protein coding RNA 278 (LINC00278), non-coding RNA"	ChrY	  2871037	  2871573	+	100873962	NR_046502.1	NA	NA	NA	NA	NA	inter
CUST_15926_PI429285431	0.96891606	A	2.210754	A	0.422833638529275	0	lncRNA	17622-1_{1..1291}	lnc-HIST1H2AI-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HIST1H2AI-1:1	chr6	 27730081	 27731371	+	lnc-HIST1H2AI-1	lnc-HIST1H2AI-1:1	XLOC_005221	linc-HIST1H2AI-1	NA	NA	NA	inter
CUST_2042_PI429285431	0.92489976	A	0.9209965	A	1.00270919692314	0	lncRNA	2034-1_{1..389}	"transcript_id ""ENST00000505396.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505396.1"" | genecode_v17"	chr5	  3178209	  3178597	+	ENSG00000249808.1	ENST00000505396.1	CTD-2029E14.1	CTD-2029E14.1-001	NA	NA	NA	inter
CUST_26824_PI429285431	5.6143003	P	5.779995	P	0.891499133052524	0	lncRNA	28337-1_{1..673}	n323893|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000144797|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000144797|-1.0172500|-0.3097277	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323893|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000144797|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000144797|-1.0172500|-0.3097277	chrX	 39049831	 39050503	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10450_PI429285431	1.2264388	A	1.0431715	A	1.13545245729279	0	lncRNA	11976-1_{1..435}	lnc-CDH4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH4-2:1	chr20	 59655064	 59655498	+	lnc-CDH4-2	lnc-CDH4-2:1	XLOC_013594	linc-CDH4-1	NA	NA	NA	inter
CUST_29709_PI429285431	6.555479	P	6.011229	P	1.45826205448116	0	lncRNA	31471-1_{1..390}	n333375|BC003668|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086269|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086269|1.9185100|-0.2033768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333375|BC003668|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086269|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086269|1.9185100|-0.2033768	chr1	218458651	218459040	+	NA	NA	NA	NA	RRP15	NA	chr1:218458629-218485880	inner
CUST_13721_PI429285431	0.9080578	A	1.0063694	A	0.934125568298793	0	lncRNA	15360-1_{1..995}	lnc-CALML5-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CALML5-3:1	chr10	  5592607	  5593601	-	lnc-CALML5-3	lnc-CALML5-3:1	XLOC_008708	linc-CALML5-3	NA	NA	NA	inter
LNCA_21_P0001306	5.0390797	P	5.0982747	P	0.959799522216234	0	lncRNA	TCONS_00000956	NA	NA	NA	NA	XLOC_000214	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000214), lincRNA [TCONS_00000956]"	chr1:56881383-56881442	hs|1p32.2	Agilent_HUMAN_G3V2	TCONS_00000956	TCONS_00000956	chr1	 56881383	 56881442	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2567_PI429285431	2.387024	A	1.6001343	A	1.72535077384336	0	lncRNA	2555-1_{1..554}	"transcript_id ""ENST00000427048.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427048.2"" | genecode_v17"	chr6	 81153107	 81153660	+	ENSG00000233967.2	ENST00000427048.2	RP11-250B2.3	RP11-250B2.3-002	NA	NA	NA	inter
CUST_13568_PI429285431	1.0474075	A	1.6680381	A	0.650386582509527	0	lncRNA	15209-1_{1..582}	lnc-VAV3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VAV3-1:4	chr1	106615551	106616132	-	lnc-VAV3-1	lnc-VAV3-1:4	XLOC_000950	linc-AMY1A-4	NA	NA	NA	inter
CUST_48799_PI429285431	2.5709429	A	3.0283139	A	0.72831224183422	0	lncRNA	52637-1_{1..741}	hg19_lincRNAsTranscripts_TCONS_l2_00014295 range=chr2:233389035-233390514 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014295 range=chr2:233389035-233390514 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	233389035	233389775	+	NA	NA	NA	NA	CHRND	NA	chr2:233386725-233400205	inner
CUST_11717_PI429285431	1.1921601	A	1.6171626	A	0.744837440855303	0	lncRNA	13295-1_{1..569}	lnc-RGL4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGL4-2:1	chr22	 23915210	 23915778	+	lnc-RGL4-2	lnc-RGL4-2:1	XLOC_014175	linc-RGL4-3	IGLL1	NA	chr22:23915312-23922495	inter
CUST_14868_PI429285431	1.8091043	A	1.9667592	A	0.896481116771563	0	lncRNA	16532-1_{1..576}	lnc-DHX37-10:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-10:17	chr12	127221212	127221787	-	lnc-DHX37-10	lnc-DHX37-10:17	XLOC_010244	linc-DHX37-4	NA	NA	NA	inter
CUST_36413_PI429285431	0.92333573	A	0.915439	A	1.00548860363163	0	lncRNA	37631-1_{1..1661}	n344930|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_479|NULL|-1.3228000|-0.4443988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344930|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_479|NULL|-1.3228000|-0.4443988	chr6	151713942	151715602	+	NA	NA	NA	NA	ZBTB2	NA	chr6:151703942-151712677	inter
CUST_7397_PI429285431	0.9243604	A	0.9118018	A	1.00874295650817	0	lncRNA	9042-2_{3001..3309}	lnc-DIAPH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DIAPH1-1:1	chr5	140816140	140816448	-	lnc-DIAPH1-1	lnc-DIAPH1-1:1	ENSG00000248269	ENST00000513512	PCDHGA1	"hg19_refFlat_PCDHGA12:range=chr5:140810327-1408907405'pad=0,hg19_refFlat_PCDHGA12:range=chr5:140810327-1408907405'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_PCDHGA12:range=chr5:140810327-1408127895'pad=0,hg19_refFlat_PCDHGA12:range=chr5:140810327-1408127895'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70chr5:140803140-140823405"	NA	inner
CUST_49308_PI429285431	0.9221437	A	1.3538731	A	0.741372547867995	0	lncRNA	53125-2_{3001..4530}	hg19_lincRNAsTranscripts_TCONS_l2_00022832 range=chr5:34164607-34179317 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022832 range=chr5:34164607-34179317 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 34167607	 34169136	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40551_PI429285431	1.3400999	A	0.9659847	A	1.29604445117057	0	lncRNA	41309-1_{1..1751}	n409699|NR_034100|lncRNA|Homosapiens||RefGeneNoncode|NR_034100||-0.9090920|-0.2756969	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n409699|NR_034100|lncRNA|Homosapiens||RefGeneNoncode|NR_034100||-0.9090920|-0.2756969	chr18	  6925472	  6927222	-	NA	NA	NA	NA	LAMA1	NA	chr18:6926973-6939868	inter
CUST_49957_PI429285431	1.072775	A	0.91638196	A	1.1144972370369	0	lncRNA	53706-1_{1..404}	hg19_lincRNAsTranscripts_TCONS_l2_00026236 range=chr7:136848880-136850347 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026236 range=chr7:136848880-136850347 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	136848880	136849283	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18208_PI429285431	1.6808406	A	2.39974	A	0.607560760055655	0	lncRNA	19943-1_{1..1076}	lnc-OBP2B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OBP2B-2:1	chr9	136150578	136151653	-	lnc-OBP2B-2	lnc-OBP2B-2:1	ENSG00000175164	ABO	ABO	NA	chr9:136140578-136150630	inner
CUST_41414_PI429285431	3.8174503	P	3.8209362	P	0.997586675005726	0	lncRNA	42550-1_{1..109}	ENST00000516807 ncrna:miRNA chromosome:GRCh37:4:218004:218112:1 gene:ENSG00000252616 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516807 ncrna:miRNA chromosome:GRCh37:4:218004:218112:1 gene:ENSG00000252616 gene_biotype:miRNA transcript_biotype:miRNA	chr4	   218004	   218112	+	ENSG00000252616	ENST00000516807	NA	NA	NA	NA	NA	inter
CUST_38996_PI429285431	1.799085	A	2.3183756	A	0.697714828205196	0	lncRNA	39977-1_{1..2569}	n385272|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vmj.1||3.6842600|-0.3104990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385272|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vmj.1||3.6842600|-0.3104990	chr7	127637561	127640129	+	NA	NA	NA	NA	SND1	NA	chr7:127627561-127650130	inner
CUST_32819_PI429285431	2.9179177	A	3.1206722	A	0.868890029530615	0	lncRNA	34454-1_{1..1978}	n339467|S67859|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1905|NULL|4.9438700|-0.1903046	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339467|S67859|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1905|NULL|4.9438700|-0.1903046	chr3	120461608	120463585	+	NA	NA	NA	NA	RABL3	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90chr3:120451608-120461384"	NA	inner
CUST_16718_PI429285431	6.2919908	P	6.3662796	P	0.949810229970908	0	lncRNA	18425-1_{1..255}	lnc-EFR3B-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFR3B-3:9	chr2	 25195495	 25195749	+	lnc-EFR3B-3	lnc-EFR3B-3:9	XLOC_001398	linc-EFR3B	DNAJC27	NA	chr2:25185495-25194963	inter
CUST_32204_PI429285431	2.9214106	A	3.1883874	A	0.831059225761727	0	lncRNA	33901-1_{1..1009}	n338781|BC043380|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1203|NULL|-1.0166500|-0.3004369	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n338781|BC043380|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1203|NULL|-1.0166500|-0.3004369	chr2	 40149989	 40150997	+	NA	NA	NA	NA	SLC8A1	NA	chr2:40339286-40492342	inner
CUST_10153_PI429285431	2.3812308	A	1.9477317	A	1.35050511123317	0	lncRNA	11677-1_{1..2770}	lnc-POTEB-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POTEB-5:2	chr15	 22545158	 22547927	-	lnc-POTEB-5	lnc-POTEB-5:2	XLOC_011397	linc-POTEB-2	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20"	NA	inter
CUST_3527_PI429285431	0.91619337	A	0.900962	A	1.01061350907952	0	lncRNA	3496-1_{1..396}	"transcript_id ""ENST00000433546.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433546.2"" | genecode_v17"	chr9	118501942	118502337	-	ENSG00000228714.2	ENST00000433546.2	RP11-284G10.1	RP11-284G10.1-001	NA	NA	NA	inter
CUST_5677_PI429285431	4.1777616	P	5.085984	P	0.532841221066862	0	lncRNA	5602-1_{1..553}	"transcript_id ""ENST00000597578.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597578.1"" | genecode_v17"	chr16	 86523789	 86524341	-	ENSG00000268388.1	ENST00000597578.1	FENDRR	FENDRR-006	FOXF1	NA	chr16:86544133-86548070	inter
CUST_50512_PI429285431	9.526194	P	9.385649	P	1.10232145593231	0	lncRNA	54208-1_{1..2263}	hg19_lincRNAsTranscripts_TCONS_l2_00030590 range=chrX:120152107-120165436 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030590 range=chrX:120152107-120165436 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	120152107	120154369	-	NA	NA	NA	NA	GLUD2	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80chrX:120159133-120175436"	NA	inter
CUST_48113_PI429285431	7.996319	P	8.128332	P	0.912557265531959	0	lncRNA	51985-2_{3001..4811}	"gi|397138530|ref|XR_159520.1| PREDICTED: Homo sapiens protein FAM75D1-like (LOC100996796), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138530|ref|XR_159520.1| PREDICTED: Homo sapiens protein FAM75D1-like (LOC100996796), misc_RNA"	NA	NA	NA	NA	NA	XR_159520.1	NA	NA	NA	NA	NA	Unknown
CUST_38804_PI429285431	0.89920795	A	0.89553475	A	1.00254931220788	0	lncRNA	39797-1_{1..729}	n384534|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003iol.2||-1.1622100|-0.2990632	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384534|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003iol.2||-1.1622100|-0.2990632	chr4	155548096	155548824	+	NA	NA	NA	NA	LRAT	NA	chr4:155665163-155674270	inner
CUST_43446_PI429285431	10.244331	P	10.033562	P	1.1573048979673	0	lncRNA	48253-2_{3001..3224}	"gi|386869228|ref|NR_048548.1| Homo sapiens solute carrier family 6 (neurotransmitter transporter, glycine), member 9 (SLC6A9), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|386869228|ref|NR_048548.1| Homo sapiens solute carrier family 6 (neurotransmitter transporter, glycine), member 9 (SLC6A9), transcript variant 5, non-coding RNA"	Chr1	 44465155	 44465378	-	6536	NR_048548.1	NA	NA	NA	NA	NA	inter
CUST_48992_PI429285431	16.043322	P	16.191338	P	0.902490718464578	0	lncRNA	52824-1_{1..546}	hg19_lincRNAsTranscripts_TCONS_l2_00020322 range=chr3:196710761-196713813 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020322 range=chr3:196710761-196713813 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	196710761	196711306	-	NA	NA	NA	NA	MFI2	NA	chr3:196717463-196723813	inter
CUST_45149_PI429285431	1.8183559	A	1.0333536	A	1.72309506644636	0	lncRNA	49629-1_{1..3000}	"gi|194473993|ref|NR_024040.1| Homo sapiens chondroitin sulfate N-acetylgalactosaminyltransferase 1 (CSGALNACT1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|194473993|ref|NR_024040.1| Homo sapiens chondroitin sulfate N-acetylgalactosaminyltransferase 1 (CSGALNACT1), transcript variant 3, non-coding RNA"	Chr8	 19261672	 19264671	-	55790	NR_024040.1	NA	NA	NA	NA	NA	inter
CUST_14364_PI429285431	0.9140346	A	0.9224123	A	0.994209848779885	0	lncRNA	16023-1_{1..2756}	lnc-LHFP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LHFP-2:1	chr13	 39793746	 39796501	-	lnc-LHFP-2	lnc-LHFP-2:1	XLOC_010575	linc-C13orf23-2	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80"	NA	inter
CUST_43231_PI429285431	3.570641	P	3.9974525	P	0.743904072067137	0	lncRNA	48046-1_{1..546}	ENST00000596816 havana:sense_intronic chromosome:GRCh37:19:16750778:16751479:-1 gene:ENSG00000267904 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000596816 havana:sense_intronic chromosome:GRCh37:19:16750778:16751479:-1 gene:ENSG00000267904 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 16750778	 16751323	-	ENSG00000267904	ENST00000596816	NA	NA	C19orf42	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90chr19:16756959-16761479"	NA	inter
CUST_46389_PI429285431	1.4271185	A	1.139306	A	1.22078784254898	0	lncRNA	50606-1_{1..1687}	"gi|381140034|ref|NR_046472.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 15, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|381140034|ref|NR_046472.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 15, non-coding RNA"	Chr14	101292445	101294131	+	55384	NR_046472.1	NA	NA	NA	NA	NA	inter
CUST_28867_PI429285431	4.951769	P	5.532541	P	0.668605904197307	0	lncRNA	30580-1_{1..779}	n326287|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086758|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086758|0.3125780|-0.4238833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326287|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086758|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086758|0.3125780|-0.4238833	chr1	191540497	191541275	+	NA	NA	NA	NA	NA	"hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60"	NA	inter
CUST_38780_PI429285431	0.9057976	A	0.89902997	A	1.00470198344799	0	lncRNA	39772-1_{1..1273}	n384426|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003gnd.3||1.5124400|-0.3846494	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384426|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003gnd.3||1.5124400|-0.3846494	chr4	 14472091	 14473363	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6835_PI429285431	0.9179389	A	0.9251378	A	0.995022531617593	0	lncRNA	6783-1_{1..607}	"transcript_id ""ENST00000324988.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000324988.3"" | genecode_v17"	chr21	 29385682	 29386288	+	ENSG00000178457.3	ENST00000324988.3	LINC00314	LINC00314-001	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
CUST_12508_PI429285431	3.0167546	A	3.160861	A	0.904939720339142	0	lncRNA	14119-1_{1..601}	lnc-LINC00273-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LINC00273-8:1	chr16	 34766012	 34766612	-	lnc-LINC00273-8	lnc-LINC00273-8:1	XLOC_011927	linc-TP53TG3B-1	NA	NA	NA	inter
CUST_34597_PI429285431	0.9298934	A	0.90367866	A	1.01833676427179	0	lncRNA	36054-2_{3001..4121}	n341480|AK001117|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3950|NULL|-1.2130900|-0.3732599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341480|AK001117|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3950|NULL|-1.2130900|-0.3732599	chr8	 31838222	 31839342	+	NA	NA	NA	NA	NRG1	NA	chr8:31825222-31849342	inner
CUST_46715_PI429285431	0.9249815	A	0.91531456	A	1.00672311153262	0	lncRNA	50872-2_{3001..3387}	"gi|254281194|ref|NR_028075.1| Homo sapiens scavenger receptor class F, member 1 (SCARF1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254281194|ref|NR_028075.1| Homo sapiens scavenger receptor class F, member 1 (SCARF1), transcript variant 2, non-coding RNA"	Chr17	  1540152	  1540538	-	8578	NR_028075.2	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-60.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90"	NA	inter
CUST_38649_PI429285431	0.9186264	A	1.1382357	A	0.858797978265031	0	lncRNA	39652-2_{3001..3868}	n383889|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wxz.2||1.8577400|-0.1515224	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n383889|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wxz.2||1.8577400|-0.1515224	chr20	 31223661	 31224528	-	NA	NA	NA	NA	C20orf203	NA	chr20:31219427-31239783	inner
CUST_36371_PI429285431	0.9203329	A	2.0653622	A	0.452180505257369	0	lncRNA	37591-1_{1..878}	n344888|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_437|NULL|-1.5737000|-0.3102523	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344888|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_437|NULL|-1.5737000|-0.3102523	chr6	 18053867	 18054744	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2679_PI429285431	6.4387264	P	6.663418	P	0.855777942864173	0	lncRNA	2665-1_{1..514}	"transcript_id ""ENST00000603032.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603032.1"" | genecode_v17"	chr6	157744996	157745509	+	ENSG00000271040.1	ENST00000603032.1	RP5-933K21.3	RP5-933K21.3-001	C6orf35	NA	chr6:157734996-157745253	inner
CUST_43888_PI429285431	3.5502076	P	4.0579476	P	0.70332334024924	0	lncRNA	48607-1_{1..1704}	"gi|223717953|ref|NR_026875.1| Homo sapiens neuralized homolog 3 (Drosophila) pseudogene (NEURL3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223717953|ref|NR_026875.1| Homo sapiens neuralized homolog 3 (Drosophila) pseudogene (NEURL3), non-coding RNA"	Chr2	 97163383	 97165086	-	93082	NR_026875.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0011835	0.92456686	A	0.91406435	A	1.00730634724777	0	lncRNA	TCONS_l2_00013868	NA	NA	NA	NA	XLOC_l2_007468	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007468), lincRNA [TCONS_l2_00013868]"	chr2:105282543-105282602	hs|2q12.1	Agilent_HUMAN_G3V2	TCONS_l2_00013868	TCONS_l2_00013868	chr2	105282543	105282602	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43592_PI429285431	9.299274	P	8.199106	P	2.14379655291599	0	lncRNA	48356-2_{3001..5683}	"gi|374253758|ref|NR_046188.1| Homo sapiens neuroblastoma breakpoint family, member 24 (NBPF24), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374253758|ref|NR_046188.1| Homo sapiens neuroblastoma breakpoint family, member 24 (NBPF24), transcript variant 2, non-coding RNA"	NW_003871055.3	  4920459	  4923141	-	728912	NR_046188.2	NA	NA	NA	NA	NA	Unknown
CUST_33195_PI429285431	2.6164196	A	2.3581047	A	1.19608083929931	0	lncRNA	34787-1_{1..1040}	n339891|BC015108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2339|NULL|-1.1526500|-0.2173938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339891|BC015108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2339|NULL|-1.1526500|-0.2173938	chr4	 23724536	 23725575	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1138_PI429285431	0.9131386	A	0.91434443	A	0.999164531533554	0	lncRNA	1127-1_{1..531}	"transcript_id ""ENST00000427615.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427615.1"" | genecode_v17"	chr2	151485569	151486099	+	ENSG00000224048.1	ENST00000427615.1	AC104777.4	AC104777.4-001	NA	NA	NA	inter
CUST_9853_PI429285431	0.90632343	A	0.89732605	A	1.00625599608934	0	lncRNA	11373-1_{1..370}	lnc-NR3C2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR3C2-2:1	chr4	149863494	149863863	-	lnc-NR3C2-2	lnc-NR3C2-2:1	XLOC_004118	linc-NR3C2-4	NA	NA	NA	inter
CUST_8839_PI429285431	10.054496	P	9.8824	P	1.126694198634	0	lncRNA	10378-1_{1..741}	lnc-RALGAPB-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RALGAPB-1:14	chr20	 37078979	 37079719	+	lnc-RALGAPB-1	lnc-RALGAPB-1:14	ENSG00000174365	SNHG11	NA	NA	NA	inter
CUST_35932_PI429285431	1.0877535	A	0.909374	A	1.13161209352974	0	lncRNA	37296-1_{1..3000}	n344571|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_119|NULL|-1.3512800|-0.3379247	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n344571|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_119|NULL|-1.3512800|-0.3379247	chr21	 26934385	 26937384	+	NA	NA	NA	NA	MRPL39	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60chr21:26957968-26961344"	NA	inter
CUST_40844_PI429285431	4.9529877	P	5.349021	P	0.759944887101578	0	lncRNA	41547-1_{1..2728}	n410616|NR_037861|lncRNA|Homosapiens||RefGeneNoncode|NR_037861||4.9579600|-0.1227873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410616|NR_037861|lncRNA|Homosapiens||RefGeneNoncode|NR_037861||4.9579600|-0.1227873	chr6	 32121775	 32124502	+	NA	NA	NA	NA	AGPAT1	NA	chr6:32135983-32145888	inner
CUST_19692_PI429285431	8.761302	P	8.470699	P	1.22315140870855	0	lncRNA	21350-1_{1..747}	lnc-BLID-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BLID-1:6	chr11	121972155	121972901	-	lnc-BLID-1	lnc-BLID-1:6	ENSG00000255248.2	RP11-166D19.1	NA	NA	NA	inter
CUST_4937_PI429285431	8.081758	P	7.923727	P	1.11576329710107	0	lncRNA	4881-1_{1..813}	"transcript_id ""ENST00000554519.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554519.1"" | genecode_v17"	chr14	 88202746	 88203558	-	ENSG00000258807.1	ENST00000554519.1	RP11-1152H15.1	RP11-1152H15.1-003	NA	NA	NA	inter
CUST_7815_PI429285431	0.9017954	A	0.90342516	A	0.998870974280677	0	lncRNA	9439-1_{1..1959}	lnc-KDM4C-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KDM4C-8:2	chr9	  8859956	  8861914	+	lnc-KDM4C-8	lnc-KDM4C-8:2	ENSG00000225706	RP11-75C9.1	PTPRD	NA	chr9:8849956-8871724	inner
CUST_50316_PI429285431	0.91097987	A	1.1457767	A	0.849804665909829	0	lncRNA	54035-1_{1..2557}	hg19_lincRNAsTranscripts_TCONS_l2_00028987 range=chr9:110779853-110810255 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028987 range=chr9:110779853-110810255 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	110779853	110782409	+	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70"	NA	inter
CUST_22970_PI429285431	0.91214657	A	1.0304763	A	0.921253608315465	0	lncRNA	24544-1_{1..921}	lnc-C11orf10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf10-1:1	chr11	 61557965	 61558885	-	lnc-C11orf10-1	lnc-C11orf10-1:1	ENSG00000256428.1	RP11-467L20.9	FADS1	"hg19_refFlat_MYRF:range=chr11:61522896-615536155'pad=0,hg19_refFlat_MYRF:range=chr11:61522896-615536155'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.00;hg19_refFlat_MYRF:range=chr11:61520217-615536155'pad=0,hg19_refFlat_MYRF:range=chr11:61520217-615536155'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.00chr11:61567097-61568075"	NA	inner
LNCA_21_P0004272	6.6945972	P	6.4718714	P	1.16693629171216	0	lncRNA	TCONS_00010008	NA	NA	NA	NA	XLOC_004446	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004446), lincRNA [TCONS_00010008]"	chr5:82026759-82026818	hs|5q14.2	Agilent_HUMAN_G3V2	TCONS_00010008	TCONS_00010008	chr5	 82026759	 82026818	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29375_PI429285431	5.96254	P	6.2825565	P	0.801060715863116	0	lncRNA	31127-1_{1..392}	n332645|AB037882|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059204|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059204|1.3447400|-0.0355423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332645|AB037882|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059204|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059204|1.3447400|-0.0355423	chr3	  9793587	  9793978	+	NA	NA	NA	NA	OGG1	NA	chr3:9791628-9808353	inner
CUST_39711_PI429285431	0.90453637	A	0.9011258	A	1.00236682349463	0	lncRNA	40646-2_{3001..3525}	n405614|NR_002775|lncRNA|Homosapiens||RefGeneNoncode|NR_002775||5.3925300|-0.1908722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405614|NR_002775|lncRNA|Homosapiens||RefGeneNoncode|NR_002775||5.3925300|-0.1908722	chr11	 61385507	 61386031	+	NA	NA	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-58.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20"	NA	inter
CUST_6492_PI429285431	0.9104275	A	0.90495086	A	1.00380333195525	0	lncRNA	6434-1_{1..550}	"transcript_id ""ENST00000585467.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585467.1"" | genecode_v17"	chr19	 37119695	 37120244	+	ENSG00000266935.1	ENST00000585467.1	CTD-3234P18.2	CTD-3234P18.2-001	ZNF382	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-26.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90chr19:37109695-37119499"	NA	inter
CUST_1725_PI429285431	1.2338387	A	0.9085493	A	1.25291574429925	0	lncRNA	1711-1_{1..507}	"transcript_id ""ENST00000515292.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515292.1"" | genecode_v17"	chr4	 31172766	 31173272	+	ENSG00000251182.1	ENST00000515292.1	RP11-617I14.1	RP11-617I14.1-001	NA	NA	NA	inter
CUST_17266_PI429285431	3.5021024	P	3.937908	P	0.739280825399274	0	lncRNA	18984-1_{1..212}	lnc-ARRDC3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARRDC3-1:3	chr5	 90610149	 90610360	-	lnc-ARRDC3-1	lnc-ARRDC3-1:3	XLOC_004924	linc-LYSMD3-2	NA	NA	NA	inter
CUST_5303_PI429285431	1.0440348	A	0.9169419	A	1.09209086689614	0	lncRNA	5243-1_{1..565}	"transcript_id ""ENST00000555947.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555947.1"" | genecode_v17"	chr15	 91951938	 91952502	+	ENSG00000258551.1	ENST00000555947.1	RP11-661P17.1	RP11-661P17.1-002	NA	NA	NA	inter
CUST_35615_PI429285431	7.4344425	P	7.482818	P	0.967024602819481	0	lncRNA	37028-1_{1..658}	n342753|CR608259|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5256|NULL|-0.9296060|-0.3466937	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342753|CR608259|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5256|NULL|-0.9296060|-0.3466937	chr11	 18212109	 18212766	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24149_PI429285431	0.9255779	A	1.2105628	A	0.820750199165909	0	lncRNA	25701-1_{1..480}	lnc-RPL7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RPL7-2:1	chr8	 73997690	 73998169	-	lnc-RPL7-2	lnc-RPL7-2:1	ENSG00000237061.1	RP11-956J14.1	C8orf84	NA	chr8:73987690-74005507	inner
CUST_48455_PI429285431	6.595107	P	5.058004	P	2.90211160209121	0	lncRNA	52309-2_{3001..4780}	hg19_lincRNAsTranscripts_TCONS_l2_00001787 range=chr1:219781270-219786516 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001787 range=chr1:219781270-219786516 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	219784270	219786049	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31378_PI429285431	0.98459196	A	0.9524524	A	1.02252744065225	0	lncRNA	33156-1_{1..801}	n337844|L08437|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|227|NULL|-1.4011800|-0.4630630	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337844|L08437|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|227|NULL|-1.4011800|-0.4630630	chrX	123235613	123236413	-	NA	NA	NA	NA	STAG2	NA	chrX:123225613-123236506	inner
CUST_773_PI429285431	4.3728333	P	4.3157415	P	1.04036646388192	0	lncRNA	765-1_{1..1096}	"transcript_id ""ENST00000426539.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426539.1"" | genecode_v17"	chr2	 16190549	 16191644	+	ENSG00000236289.2	ENST00000426539.1	AC130710.1	AC130710.1-001	NA	NA	NA	inter
CUST_15204_PI429285431	5.6828046	P	6.297641	P	0.653003939260554	0	lncRNA	16872-1_{1..430}	lnc-SFTPB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SFTPB-1:1	chr2	 85967260	 85967689	-	lnc-SFTPB-1	lnc-SFTPB-1:1	XLOC_002191	linc-SFTPB	NA	NA	NA	inter
CUST_11112_PI429285431	0.9177883	A	0.9129866	A	1.00333382970676	0	lncRNA	12669-1_{1..535}	lnc-ZSWIM2-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZSWIM2-7:3	chr2	186031776	186032310	-	lnc-ZSWIM2-7	lnc-ZSWIM2-7:3	XLOC_002424	linc-NCKAP1-2	NA	NA	NA	inter
LNCA_21_P0002442	2.278812	A	2.7364547	A	0.728175093096435	0	lncRNA	TCONS_00004261	NA	NA	NA	NA	XLOC_002102	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002102), lincRNA [TCONS_00004261]"	chr2:57542626-57541624	hs|2p16.1	Agilent_HUMAN_G3V2	TCONS_00004261	TCONS_00004261	chr2	 57541624	 57542626	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9074_PI429285431	2.863861	A	2.9377618	A	0.950065707337344	0	lncRNA	10597-1_{1..488}	lnc-ACTR2-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACTR2-3:9	chr2	 65981883	 65982370	+	lnc-ACTR2-3	lnc-ACTR2-3:9	ENSG00000204929	XLOC_001504	NA	NA	NA	inter
CUST_51578_PI429285431	1.1014485	A	0.9277476	A	1.12794826661676	0	lncRNA	55143-1_{1..587}	hg19_lincRNAsTranscripts_TCONS_l2_00010613 range=chr17:20271059-20305392 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010613 range=chr17:20271059-20305392 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 20271059	 20271645	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6618_PI429285431	4.1256776	P	3.9151373	P	1.15712145334095	0	lncRNA	6565-1_{1..423}	"transcript_id ""ENST00000597309.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597309.1"" | genecode_v17"	chr19	 58917763	 58918185	-	ENSG00000232098.2	ENST00000597309.1	CTD-2619J13.14	CTD-2619J13.14-003	ZNF584	NA	chr19:58920063-58928544	inter
CUST_30400_PI429285431	9.318003	P	8.760178	P	1.47204829076655	0	lncRNA	32180-1_{1..843}	n335522|BC068059|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000262919|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000262919|1.4780000|-0.0554338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335522|BC068059|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000262919|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000262919|1.4780000|-0.0554338	chr6	114178548	114179390	+	NA	NA	NA	NA	MARCKS	NA	chr6:114178527-114184652	inner
LNCA_21_P0014497	1.006237	A	2.5263999	A	0.348646547401792	0	lncRNA	ENST00000411904	XR_110096	XR_110096	NA	Hs.191591	LOC100505976	NA	ENST00000411904	THC2626419	NA	"PREDICTED: Homo sapiens hypothetical LOC100505976 (LOC100505976), miscRNA [XR_110096]"	chr9:139543199-139543140	hs|9q34.3	Agilent_HUMAN_G3V2	ENST00000411904	ENST00000411904	chr9	139543140	139543199	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24923_PI429285431	2.4053164	A	1.4696208	A	1.91281268160069	0	lncRNA	26464-1_{1..402}	lnc-GCNT3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GCNT3-1:1	chr15	 59981276	 59981677	+	lnc-GCNT3-1	lnc-GCNT3-1:1	ENSG00000259238.1	RP11-361D15.2	BNIP2	"hg19_refFlat_BNIP2:range=chr15:59956268-599816395'pad=0,hg19_refFlat_BNIP2:range=chr15:59956268-599816395'pad=0 3'pad=0 strand=- repeatMasking=none,-109.60chr15:59971276-59981642"	NA	inner
CUST_17640_PI429285431	4.79524	P	5.202942	P	0.753823146794807	0	lncRNA	19368-1_{1..378}	lnc-NUMB-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUMB-1:4	chr14	 73930181	 73930558	-	lnc-NUMB-1	lnc-NUMB-1:4	XLOC_011068	linc-NUMB	NUMB	NA	chr14:73920181-73925286	inter
CUST_3948_PI429285431	0.91675955	A	2.2935026	A	0.385087166640144	0	lncRNA	3918-1_{1..585}	"transcript_id ""ENST00000531715.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531715.1"" | genecode_v17"	chr11	 58265361	 58265945	-	ENSG00000255299.1	ENST00000531715.1	RP11-655C2.3	RP11-655C2.3-002	OR5B21	NA	chr11:58274649-58275578	inter
CUST_1587_PI429285431	1.3380878	A	1.260994	A	1.054890900897	0	lncRNA	1573-1_{1..477}	"transcript_id ""ENST00000462382.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000462382.1"" | genecode_v17"	chr3	181839672	181840148	+	ENSG00000240478.1	ENST00000462382.1	RP11-416O18.2	RP11-416O18.2-001	NA	NA	NA	inter
CUST_3608_PI429285431	0.98774195	A	2.3884718	A	0.37873749233051	0	lncRNA	3578-1_{1..299}	"transcript_id ""ENST00000457632.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457632.1"" | genecode_v17"	chr10	  6933419	  6933717	-	ENSG00000234248.1	ENST00000457632.1	RP11-799O21.2	RP11-799O21.2-001	NA	NA	NA	inter
CUST_1409_PI429285431	0.9133155	A	0.9113315	A	1.00137615003287	0	lncRNA	1398-1_{1..710}	"transcript_id ""ENST00000473636.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000473636.1"" | genecode_v17"	chr3	106830713	106831422	-	ENSG00000242759.1	ENST00000473636.1	RP11-280F2.2	RP11-280F2.2-002	NA	NA	NA	inter
CUST_20231_PI429285431	1.2690139	A	0.9297371	A	1.26512224939665	0	lncRNA	21874-1_{1..579}	lnc-RARS-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RARS-2:2	chr5	168137060	168137638	+	lnc-RARS-2	lnc-RARS-2:2	ENSG00000254042.1	CTC-558O2.1	SLIT3	NA	chr5:168127060-168147086	inner
CUST_47695_PI429285431	1.7131923	A	1.3883187	A	1.25255469273569	0	lncRNA	51666-3_{6001..6350}	"gi|385137097|ref|NR_047635.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 65, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137097|ref|NR_047635.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 65, non-coding RNA"	ChrY	 15366259	 15366608	-	7404	NR_047635.1	NA	NA	NA	NA	NA	inter
CUST_8880_PI429285431	3.6826932	P	4.201661	P	0.697870957905899	0	lncRNA	10417-1_{1..1998}	lnc-SCAMP5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SCAMP5-1:1	chr15	 75247946	 75249943	+	lnc-SCAMP5-1	lnc-SCAMP5-1:1	ENSG00000247368	ENST00000499788	RPP25	"hg19_refFlat_RPP25:range=chr15:75248325-752489245'pad=0,hg19_refFlat_RPP25:range=chr15:75248325-752489245'pad=0 3'pad=0 strand=- repeatMasking=none,-112.30chr15:75247443-75249775"	NA	inner
CUST_49838_PI429285431	0.9227982	A	1.078413	A	0.897749718108829	0	lncRNA	53596-1_{1..1275}	hg19_lincRNAsTranscripts_TCONS_l2_00026644 range=chr7:65466089-65493631 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026644 range=chr7:65466089-65493631 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 65466089	 65467363	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-64.40"	NA	inter
CUST_36218_PI429285431	3.6284168	P	3.5543919	P	1.05264932261132	0	lncRNA	37471-2_{3001..5130}	n344761|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_310|NULL|-1.6041800|-0.4169398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344761|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_310|NULL|-1.6041800|-0.4169398	chrX	102066370	102068499	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17225_PI429285431	0.9204011	A	0.9183546	A	1.0014195322885	0	lncRNA	18941-1_{1..887}	lnc-GPCPD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPCPD1-1:1	chr20	  5491277	  5492163	-	lnc-GPCPD1-1	lnc-GPCPD1-1:1	XLOC_013643	linc-PROKR2-4	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00"	NA	inter
CUST_18922_PI429285431	2.232835	A	2.9134912	A	0.623881441687194	0	lncRNA	20613-1_{1..466}	lnc-WDFY2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDFY2-2:1	chr13	 52123846	 52124311	+	lnc-WDFY2-2	lnc-WDFY2-2:1	ENSG00000236778	RP11-550E22.3	NA	NA	NA	inter
CUST_28789_PI429285431	7.9509273	P	8.013794	P	0.957359910832229	0	lncRNA	30497-1_{1..599}	n326196|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099069|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099069|-0.0487314|-0.3583106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326196|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099069|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099069|-0.0487314|-0.3583106	chr1	227295184	227295782	-	NA	NA	NA	NA	CDC42BPA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-58.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20chr1:227285184-227307275"	NA	inner
CUST_44465_PI429285431	0.9208462	A	0.9186984	A	1.00148985024019	0	lncRNA	49069-1_{1..751}	"gi|148237772|ref|NR_003542.1| Homo sapiens proteoglycan 3 pseudogene (SLED1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|148237772|ref|NR_003542.1| Homo sapiens proteoglycan 3 pseudogene (SLED1), non-coding RNA"	Chr4	185719450	185720200	-	643036	NR_003542.1	NA	NA	NA	NA	NA	inter
CUST_36027_PI429285431	1.0619007	A	2.0467973	A	0.505261934785265	0	lncRNA	37356-2_{3001..6000}	n344637|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_185|NULL|-1.3340200|-0.3109463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344637|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_185|NULL|-1.3340200|-0.3109463	chr11	 65192792	 65195791	-	NA	NA	NA	NA	FRMD8	NA	chr11:65179792-65180996	inter
CUST_35658_PI429285431	0.97383314	A	0.9683313	A	1.00382086585131	0	lncRNA	37079-1_{1..2037}	n342816|BX537815|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5319|NULL|1.5321000|-0.3833379	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n342816|BX537815|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5319|NULL|1.5321000|-0.3833379	chr7	 89748713	 89750749	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34486_PI429285431	4.0208406	P	4.312917	P	0.816725739073445	0	lncRNA	35955-1_{1..3000}	n341364|AK130536|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3833|NULL|0.3612520|-0.2222985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341364|AK130536|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3833|NULL|0.3612520|-0.2222985	chr7	151562746	151565745	-	NA	NA	NA	NA	PRKAG2	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60chr7:151552746-151574316"	NA	inner
CUST_28879_PI429285431	3.1837654	P	2.860029	A	1.25156775931445	0	lncRNA	30594-1_{1..746}	n326301|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086449|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086449|-1.0652800|-0.1991367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326301|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086449|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086449|-1.0652800|-0.1991367	chr1	186744291	186745036	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37061_PI429285431	4.0541315	P	4.4100537	P	0.781370015860331	0	lncRNA	38193-1_{1..433}	n345510|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1059|NULL|-1.3632000|-0.0745930	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345510|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1059|NULL|-1.3632000|-0.0745930	chr2	  8737518	  8737950	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37562_PI429285431	0.9186805	A	0.9265442	A	0.994564126636112	0	lncRNA	38664-1_{1..2304}	n346037|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1587|NULL|-1.4061500|-0.1580131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346037|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1587|NULL|-1.4061500|-0.1580131	chr2	171556887	171559190	-	NA	NA	NA	NA	SP5	NA	chr2:171571857-171574498	inter
CUST_24145_PI429285431	6.8558245	P	7.0004992	P	0.904583320718366	0	lncRNA	25697-1_{1..562}	lnc-TEAD4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TEAD4-2:1	chr12	  3260151	  3260712	+	lnc-TEAD4-2	lnc-TEAD4-2:1	ENSG00000256197.1	TSPAN9-IT1	TSPAN9	NA	chr12:3250151-3270642	inner
CUST_22136_PI429285431	9.59723	P	9.559092	P	1.02678775769815	0	lncRNA	23738-1_{1..202}	lnc-MB-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MB-2:2	chr22	 35398791	 35398992	-	lnc-MB-2	lnc-MB-2:2	ENSG00000227895.3	RP1-272J12.1	NA	NA	NA	inter
CUST_33555_PI429285431	0.924638	A	0.9905852	A	0.955317898630597	0	lncRNA	35123-1_{1..3000}	n340304|AK127466|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2765|NULL|-1.0202700|-0.1602215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340304|AK127466|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2765|NULL|-1.0202700|-0.1602215	chr5	  1383274	  1386273	-	NA	NA	NA	NA	SLC6A3	NA	chr5:1392905-1396524	inter
CUST_19785_PI429285431	1.035506	A	1.6933239	A	0.633836260113088	0	lncRNA	21443-1_{1..826}	lnc-AC108463.1-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC108463.1-3:6	chr2	112252462	112253287	-	lnc-AC108463.1-3	lnc-AC108463.1-3:6	ENSG00000172965.6	AC068491.1	NA	NA	NA	inter
CUST_39222_PI429285431	0.9268878	A	0.9313475	A	0.996913544446282	0	lncRNA	40195-1_{1..1880}	n386039|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zhn.2||2.0467400|-0.2942454	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n386039|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zhn.2||2.0467400|-0.2942454	chr12	 10741077	 10742956	-	NA	NA	NA	NA	MAGOHB	NA	chr12:10756364-10762434	inter
CUST_38890_PI429285431	3.8265007	P	4.6709146	P	0.556937020810385	0	lncRNA	39876-1_{1..555}	n384837|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003nhj.2||-0.8573060|-0.2399057	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384837|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003nhj.2||-0.8573060|-0.2399057	chr6	 26272385	 26272939	+	NA	NA	NA	NA	HIST1H2BI	"hg19_refFlat_HIST1H2AG:range=chr6:27100851-271012435'pad=0,hg19_refFlat_HIST1H2AG:range=chr6:27100851-271012435'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70chr6:26273204-26273640"	NA	inter
CUST_51428_PI429285431	4.7106514	P	4.6948986	P	1.0109788388466	0	lncRNA	55007-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00009611 range=chr16:16450071-16464251 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009611 range=chr16:16450071-16464251 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 16450071	 16453070	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17041_PI429285431	5.8082457	P	6.5362434	P	0.603741258250048	0	lncRNA	18751-1_{1..335}	lnc-KIAA0232-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA0232-1:1	chr4	  6769175	  6769509	+	lnc-KIAA0232-1	lnc-KIAA0232-1:1	XLOC_003441	linc-KIAA0232	NA	NA	NA	inter
CUST_32584_PI429285431	4.2756867	P	4.7871566	P	0.701507337948189	0	lncRNA	34247-1_{1..1951}	n339204|AK123174|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1636|NULL|-1.1525800|-0.2735220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339204|AK123174|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1636|NULL|-1.1525800|-0.2735220	chr16	 49370953	 49372903	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3253_PI429285431	4.4273596	P	4.3965487	P	1.02158617041788	0	lncRNA	3232-1_{1..578}	"transcript_id ""ENST00000519793.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519793.1"" | genecode_v17"	chr8	102424101	102424678	-	ENSG00000254084.1	ENST00000519793.1	KB-1930G5.4	KB-1930G5.4-001	NA	NA	NA	inter
CUST_17122_PI429285431	0.916379	A	0.9156579	A	1.00049995336695	0	lncRNA	18832-1_{1..396}	lnc-UCHL5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UCHL5-2:1	chr1	192536277	192536672	-	lnc-UCHL5-2	lnc-UCHL5-2:1	XLOC_001133	linc-FAM5C-2	RGS1	NA	chr1:192544857-192546347	inter
CUST_3002_PI429285431	4.672277	P	4.915428	P	0.844897948351259	0	lncRNA	2981-1_{1..454}	"transcript_id ""ENST00000522765.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522765.1"" | genecode_v17"	chr8	  9229480	  9229933	-	ENSG00000254237.1	ENST00000522765.1	RP11-115J16.2	RP11-115J16.2-002	NA	NA	NA	inter
CUST_36552_PI429285431	0.9125553	A	0.9069188	A	1.00391456606009	0	lncRNA	37748-1_{1..1197}	n345050|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_599|NULL|-1.3593200|-0.3773567	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345050|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_599|NULL|-1.3593200|-0.3773567	chr9	 74598216	 74599412	-	NA	NA	NA	NA	C9orf85	NA	chr9:74588216-74588373	inter
CUST_51519_PI429285431	3.760119	P	3.5949953	P	1.12126221351509	0	lncRNA	55092-1_{1..756}	hg19_lincRNAsTranscripts_TCONS_l2_00009914 range=chr16:90282378-90289178 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009914 range=chr16:90282378-90289178 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 90282378	 90283133	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38074_PI429285431	5.8944473	P	5.1909285	P	1.62847187109203	0	lncRNA	39150-2_{3001..3728}	n381053|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ass.1||0.6167130|-0.2582838	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381053|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ass.1||0.6167130|-0.2582838	chr1	 11785186	 11785913	+	NA	NA	NA	NA	C1orf187	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90chr1:11772186-11780336"	NA	inter
CUST_23767_PI429285431	5.6201973	P	5.5788307	P	1.02908817395891	0	lncRNA	25330-1_{1..539}	lnc-YIF1A-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YIF1A-5:1	chr11	 66029196	 66029734	-	lnc-YIF1A-5	lnc-YIF1A-5:1	ENSG00000254461.1	RP11-755F10.3	KLC2	"hg19_refFlat_KLC2:range=chr11:66026066-660344275'pad=0,hg19_refFlat_KLC2:range=chr11:66026066-660344275'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90chr11:66024765-66035332"	NA	inner
CUST_18353_PI429285431	0.9221637	A	0.92210436	A	1.0000411321996	0	lncRNA	20081-1_{1..789}	lnc-GREM2-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GREM2-6:3	chr1	239870209	239870997	-	lnc-GREM2-6	lnc-GREM2-6:3	ENSG00000233355	RP11-343J24.1	CHRM3	NA	chr1:239860209-239880822	inner
CUST_39388_PI429285431	7.754525	P	8.017053	P	0.833625896157048	0	lncRNA	40351-1_{1..1425}	n386543|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010nnf.2||5.2562300|-0.1887016	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386543|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010nnf.2||5.2562300|-0.1887016	chrX	100110001	100111425	-	NA	NA	NA	NA	XKRX	NA	chrX:100109564-100153617	inner
CUST_5731_PI429285431	1.940697	A	2.6667619	A	0.604550641442002	0	lncRNA	5655-1_{1..3000}	"transcript_id ""ENST00000577761.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577761.1"" | genecode_v17"	chr17	 12721314	 12724313	+	ENSG00000266878.1	ENST00000577761.1	RP11-1090M7.2	RP11-1090M7.2-001	ARHGAP44	NA	chr17:12711314-12736571	inner
CUST_27735_PI429285431	0.916071	A	0.90644693	A	1.00669319697872	0	lncRNA	29317-1_{1..431}	n324951|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079750|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079750|-0.1784380|-0.2373235	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324951|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079750|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079750|-0.1784380|-0.2373235	chr20	 50501409	 50501839	-	NA	NA	NA	NA	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20"	NA	inter
CUST_49592_PI429285431	6.3425975	P	6.304872	P	1.02649421721146	0	lncRNA	53381-1_{1..411}	hg19_lincRNAsTranscripts_TCONS_l2_00024968 range=chr6:147172271-147185607 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024968 range=chr6:147172271-147185607 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	147172271	147172681	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37842_PI429285431	7.0080614	P	6.488065	P	1.43395166982896	0	lncRNA	38933-1_{1..454}	n346367|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1917|NULL|-1.3053600|-0.2906247	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346367|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1917|NULL|-1.3053600|-0.2906247	chr1	224180713	224181166	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9720_PI429285431	1.9047928	A	2.0875802	A	0.880999191325251	0	lncRNA	11236-1_{1..1887}	lnc-CHST1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHST1-1:1	chr11	 45747952	 45749838	-	lnc-CHST1-1	lnc-CHST1-1:1	XLOC_009432	linc-CHST1-2	NA	NA	NA	inter
CUST_20795_PI429285431	1.3983254	A	1.8947796	A	0.708846818271079	0	lncRNA	22427-2_{3001..6000}	lnc-WDR73-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR73-4:2	chr15	 84965536	 84968535	-	lnc-WDR73-4	lnc-WDR73-4:2	ENSG00000235370.3	CSPG4P5	NA	NA	NA	inter
CUST_42909_PI429285431	5.9405456	P	5.98282	P	0.971122770825606	0	lncRNA	46007-1_{1..83}	ENST00000515906 ncrna:snoRNA chromosome:GRCh37:13:73034657:73034739:-1 gene:ENSG00000251715 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515906 ncrna:snoRNA chromosome:GRCh37:13:73034657:73034739:-1 gene:ENSG00000251715 gene_biotype:snoRNA transcript_biotype:snoRNA	chr13	 73034657	 73034739	-	ENSG00000251715	ENST00000515906	NA	NA	NA	NA	NA	inter
CUST_13979_PI429285431	2.113627	A	0.90514594	A	2.31094201359353	0	lncRNA	15624-1_{1..218}	lnc-HOOK1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOOK1-3:1	chr1	 60724187	 60724404	+	lnc-HOOK1-3	lnc-HOOK1-3:1	XLOC_000225	linc-NFIA-2	NA	NA	NA	inter
CUST_24834_PI429285431	4.7261	P	5.134003	P	0.753718129522458	0	lncRNA	26374-1_{1..708}	lnc-AEBP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AEBP1-1:1	chr7	 44105581	 44106288	+	lnc-AEBP1-1	lnc-AEBP1-1:1	ENSG00000239775.1	AC017116.11	DBNL	"hg19_refFlat_PGAM2:range=chr7:44102363-441051285'pad=0,hg19_refFlat_PGAM2:range=chr7:44102363-441051285'pad=0 3'pad=0 strand=- repeatMasking=none,-99.70chr7:44095581-44101315"	NA	inter
CUST_15327_PI429285431	2.9574292	A	3.6438777	P	0.621381631469123	0	lncRNA	17006-1_{1..1055}	lnc-GALNTL5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GALNTL5-1:3	chr7	151575647	151576701	+	lnc-GALNTL5-1	lnc-GALNTL5-1:3	XLOC_006296	linc-GALNTL5-1	PRKAG2	NA	chr7:151565647-151574316	inter
CUST_18806_PI429285431	0.89412284	A	0.8913387	A	1.00193168208998	0	lncRNA	20501-1_{1..710}	lnc-AC005493.1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC005493.1-1:10	chr7	 34797686	 34798395	-	lnc-AC005493.1-1	lnc-AC005493.1-1:10	ENSG00000197085	AC005688.1	NPSR1	NA	chr7:34787686-34807884	inter
CUST_32142_PI429285431	0.9283361	A	1.5802901	A	0.636417759348547	0	lncRNA	33842-1_{1..1949}	n338709|AK021426|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1129|NULL|-1.1435400|-0.3574203	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338709|AK021426|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1129|NULL|-1.1435400|-0.3574203	chr2	 26435933	 26437881	+	NA	NA	NA	NA	HADHA	"hg19_refFlat_HADHA:range=chr2:26414119-264674645'pad=0,hg19_refFlat_HADHA:range=chr2:26414119-264674645'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80chr2:26425933-26447882"	NA	inner
CUST_20238_PI429285431	1.108376	A	0.92635435	A	1.13447250942474	0	lncRNA	21881-1_{1..748}	lnc-MAT2B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAT2B-3:2	chr5	163919802	163920549	+	lnc-MAT2B-3	lnc-MAT2B-3:2	ENSG00000241956.5	CTC-340A15.2	NA	NA	NA	inter
CUST_43340_PI429285431	12.935864	P	13.348703	P	0.751143783957896	0	lncRNA	48166-1_{1..3000}	"gi|256000778|ref|NR_028327.1| Homo sapiens uncharacterized LOC100133331 (LOC100133331), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|256000778|ref|NR_028327.1| Homo sapiens uncharacterized LOC100133331 (LOC100133331), non-coding RNA"	Chr1	   661139	   664138	-	100133331	NR_028327.1	NA	NA	NA	NA	NA	inter
CUST_50776_PI429285431	7.1692123	P	7.3851676	P	0.860975864125421	0	lncRNA	54432-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00004576 range=chr11:65266532-65273981 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004576 range=chr11:65266532-65273981 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65269532	 65272531	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19029_PI429285431	5.6382055	P	3.7218127	P	3.77478061645304	0	lncRNA	20720-1_{1..3000}	lnc-NKAIN3-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKAIN3-3:7	chr8	 64122241	 64125240	+	lnc-NKAIN3-3	lnc-NKAIN3-3:7	ENSG00000185728	YTHDF3	YTHDF3	NA	chr8:64112241-64125346	inner
LNCA_21_P0008892	0.94591403	A	0.9163262	A	1.02072046984981	0	lncRNA	TCONS_00024294	NA	NA	NA	NA	XLOC_011772	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011772), lincRNA [TCONS_00024294]"	chr16:70839652-70839711	hs|16q22.2	Agilent_HUMAN_G3V2	TCONS_00024294	TCONS_00024294	chr16	 70839652	 70839711	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46391_PI429285431	3.7452142	P	3.8917873	P	0.903393788921136	0	lncRNA	50608-1_{1..1714}	"gi|290543317|ref|NR_033359.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|290543317|ref|NR_033359.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 5, non-coding RNA"	Chr14	101292445	101294158	+	55384	NR_033359.1	NA	NA	NA	NA	NA	inter
CUST_15817_PI429285431	0.89934	A	0.8956009	A	1.00259510810152	0	lncRNA	17507-1_{1..1843}	lnc-PTPN2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPN2-3:1	chr18	 13216111	 13217953	-	lnc-PTPN2-3	lnc-PTPN2-3:1	XLOC_012779	linc-PTPN2-2	C18orf1	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr18:13218786-13226366"	NA	inter
CUST_49103_PI429285431	1.2731649	A	0.94628346	A	1.25429912257341	0	lncRNA	52927-1_{1..581}	hg19_lincRNAsTranscripts_TCONS_l2_00021108 range=chr4:38603968-38608278 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021108 range=chr4:38603968-38608278 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 38603968	 38604548	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26727_PI429285431	6.7643566	P	7.1144333	P	0.784542387071539	0	lncRNA	28222-1_{1..731}	n4541|L43846|snRNA|Homosapiens|u12snRNA|NONCODEv2.0|n4541|NULL|-1.5906100|-0.3281897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n4541|L43846|snRNA|Homosapiens|u12snRNA|NONCODEv2.0|n4541|NULL|-1.5906100|-0.3281897	chr22	 43010919	 43011649	+	NA	NA	NA	NA	POLDIP3	NA	chr22:43000919-43010962	inner
CUST_4868_PI429285431	10.570792	P	9.319328	P	2.38082899240575	0	lncRNA	4811-1_{1..557}	"transcript_id ""ENST00000556291.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556291.1"" | genecode_v17"	chr14	 66578349	 66578905	+	ENSG00000258502.1	ENST00000556291.1	RP11-783L4.1	RP11-783L4.1-003	NA	NA	NA	inter
CUST_24547_PI429285431	1.0300504	A	1.1095757	A	0.946368985882151	0	lncRNA	26097-1_{1..497}	lnc-OR6C70-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR6C70-1:2	chr12	 55979199	 55979695	-	lnc-OR6C70-1	lnc-OR6C70-1:2	ENSG00000258763.1	RP11-110A12.2	NA	"hg19_refFlat_OR6C2:range=chr12:55845998-558469365'pad=0,hg19_refFlat_OR6C2:range=chr12:55845998-558469365'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.70;hg19_refFlat_OR6C68:range=chr12:55886162-558871005'pad=0,hg19_refFlat_OR6C68:range=chr12:55886162-558871005'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80"	NA	inter
CUST_18956_PI429285431	7.7401457	P	7.618972	P	1.08761933197559	0	lncRNA	20647-1_{1..1433}	lnc-ZNF8-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF8-4:1	chr19	 58826114	 58827546	+	lnc-ZNF8-4	lnc-ZNF8-4:1	ENSG00000142396	AC020915.4	NA	NA	NA	inter
CUST_25016_PI429285431	8.603896	P	8.548388	P	1.03922496949535	0	lncRNA	26556-1_{1..572}	lnc-HERC1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HERC1-1:3	chr15	 63892788	 63893359	-	lnc-HERC1-1	lnc-HERC1-1:3	ENSG00000259248.1	RP11-265M18.2	HERC1	NA	chr15:63900817-63902996	inter
CUST_8212_PI429285431	3.3618765	P	2.6259944	A	1.66541543503195	0	lncRNA	9805-1_{1..724}	lnc-SLC30A10-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC30A10-4:1	chr1	219346812	219347535	-	lnc-SLC30A10-4	lnc-SLC30A10-4:1	ENSG00000228063	RP11-135J2.4	LYPLAL1	"hg19_refFlat_LYPLAL1:range=chr1:219347233-2193850705'pad=0,hg19_refFlat_LYPLAL1:range=chr1:219347233-2193850705'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.70chr1:219347192-219357303"	NA	inter
LNCA_21_P0009799	6.6354685	P	6.9559793	P	0.800786301329756	0	lncRNA	TCONS_00027655	NA	NA	NA	NA	XLOC_013195	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013195), lincRNA [TCONS_00027655]"	chr19:1246236-1246177	hs|19p13.3	Agilent_HUMAN_G3V2	TCONS_00027655	TCONS_00027655	chr19	  1246177	  1246236	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8195_PI429285431	1.0642233	A	1.1152487	A	0.965250030589591	0	lncRNA	9793-1_{1..3000}	lnc-AC021066.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC021066.1-3:2	chr12	 53007348	 53010347	+	lnc-AC021066.1-3	lnc-AC021066.1-3:2	ENSG00000248214	ENSG00000257495.1	KRT73	"hg19_refFlat_KRT73:range=chr12:53001980-530123085'pad=0,hg19_refFlat_KRT73:range=chr12:53001980-530123085'pad=0 3'pad=0 strand=- repeatMasking=none,-100.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_KRT71:range=chr12:52938316-529468615'pad=0,hg19_refFlat_KRT71:range=chr12:52938316-529468615'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_KRT79:range=chr12:53215656-532280445'pad=0,hg19_refFlat_KRT79:range=chr12:53215656-532280445'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_KRT72:range=chr12:52979766-529952365'pad=0,hg19_refFlat_KRT72:range=chr12:52979766-529952365'pad=0 3'pad=0 strand=- repeatMasking=none,-94.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_KRT76:range=chr12:53162497-531710755'pad=0,hg19_refFlat_KRT76:range=chr12:53162497-531710755'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_KRT4:range=chr12:53200853-532078425'pad=0,hg19_refFlat_KRT4:range=chr12:53200853-532078425'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_KRT2:range=chr12:53038803-530459265'pad=0,hg19_refFlat_KRT2:range=chr12:53038803-530459265'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_KRT74:range=chr12:52960753-529675615'pad=0,hg19_refFlat_KRT74:range=chr12:52960753-529675615'pad=0 3'pad=0 strand=- repeatMasking=none,-95.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chr12:53001354-53012343"	NA	inner
CUST_48016_PI429285431	1.2106644	A	1.4662223	A	0.837663141983702	0	lncRNA	51899-1_{1..2650}	"gi|410173508|ref|XR_172250.1| PREDICTED: Homo sapiens uncharacterized LOC101060542 (LOC101060542), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|410173508|ref|XR_172250.1| PREDICTED: Homo sapiens uncharacterized LOC101060542 (LOC101060542), misc_RNA"	NA	NA	NA	NA	NA	XR_172250.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80"	NA	Unknown
CUST_51019_PI429285431	8.285214	P	8.65937	P	0.771556653856863	0	lncRNA	54665-1_{1..295}	hg19_lincRNAsTranscripts_TCONS_l2_00006689 range=chr13:19240085-19241008 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006689 range=chr13:19240085-19241008 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 19240085	 19240379	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5660_PI429285431	0.91109854	A	1.0813334	A	0.88869799597993	0	lncRNA	5586-1_{1..2775}	"transcript_id ""ENST00000564138.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564138.1"" | genecode_v17"	chr16	 81993524	 81996298	+	ENSG00000260682.1	ENST00000564138.1	RP11-510J16.3	RP11-510J16.3-001	PLCG2	NA	chr16:81983524-81991899	inter
CUST_37660_PI429285431	0.93087053	A	1.0179664	A	0.94141590347394	0	lncRNA	38753-1_{1..343}	n346142|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1692|NULL|-1.6933600|-0.2077360	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346142|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1692|NULL|-1.6933600|-0.2077360	chr22	 42844674	 42845016	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35348_PI429285431	2.5796099	A	3.9421005	P	0.388910313722371	0	lncRNA	36759-1_{1..539}	n342392|CR599789|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4884|NULL|1.2029000|-0.2961808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342392|CR599789|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4884|NULL|1.2029000|-0.2961808	chr19	 43341148	 43341686	-	NA	NA	NA	NA	PSG11	NA	chr19:43511809-43530631	inner
CUST_23607_PI429285431	4.887639	P	5.1840844	P	0.814256140791987	0	lncRNA	25174-1_{1..489}	lnc-ANKRD5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD5-1:2	chr20	 10023770	 10024258	+	lnc-ANKRD5-1	lnc-ANKRD5-1:2	ENSG00000243961.1	RP5-839B4.8	ANKRD5	NA	chr20:10015697-10033864	inter
CUST_10772_PI429285431	0.9013137	A	0.9070302	A	0.996045463995315	0	lncRNA	12309-1_{1..3000}	lnc-S100P-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-S100P-1:1	chr4	  6691990	  6694989	+	lnc-S100P-1	lnc-S100P-1:1	XLOC_003440	linc-S100P	S100P	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr4:6695566-6698897"	NA	inter
CUST_37087_PI429285431	0.8988051	A	1.4858084	A	0.66572428384824	0	lncRNA	38214-1_{1..1449}	n345531|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1080|NULL|-1.4469900|-0.3057237	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345531|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1080|NULL|-1.4469900|-0.3057237	chr2	 67608937	 67610385	-	NA	NA	NA	NA	ETAA1	NA	chr2:67624442-67629611	inter
CUST_32677_PI429285431	0.9212816	A	0.90569323	A	1.01086361991754	0	lncRNA	34328-1_{1..712}	n339309|AF088013|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1741|NULL|-1.1442900|-0.2601314	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339309|AF088013|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1741|NULL|-1.1442900|-0.2601314	chr16	 83759280	 83759991	-	NA	NA	NA	NA	CDH13	NA	chr16:83749280-83769982	inner
CUST_51572_PI429285431	7.6924114	P	7.575808	P	1.08417932462197	0	lncRNA	55137-1_{1..518}	hg19_lincRNAsTranscripts_TCONS_l2_00010602 range=chr17:19495145-19498009 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010602 range=chr17:19495145-19498009 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 19495145	 19495662	+	NA	NA	NA	NA	ALDH3A2	NA	chr17:19506587-19508009	inter
CUST_6078_PI429285431	2.1867728	A	2.9482684	A	0.589884497528061	0	lncRNA	6002-1_{1..466}	"transcript_id ""ENST00000584509.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584509.1"" | genecode_v17"	chr18	  9315192	  9315657	-	ENSG00000264964.1	ENST00000584509.1	RP11-888D10.3	RP11-888D10.3-001	TWSG1	NA	chr18:9334765-9344439	inter
CUST_41370_PI429285431	9.096674	P	8.150733	P	1.9264450031439	0	lncRNA	42455-1_{1..80}	ENST00000390185 ncrna:miRNA chromosome:GRCh37:15:45725248:45725327:1 gene:ENSG00000211519 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390185 ncrna:miRNA chromosome:GRCh37:15:45725248:45725327:1 gene:ENSG00000211519 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 45725248	 45725327	+	ENSG00000211519	ENST00000390185	NA	NA	C15orf48	NA	chr15:45722763-45725647	inter
CUST_38968_PI429285431	0.947164	A	0.92270005	A	1.01710170600202	0	lncRNA	39952-1_{1..2283}	n385188|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ttk.1||2.1353200|-0.1474768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n385188|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ttk.1||2.1353200|-0.1474768	chr7	 64330549	 64332831	+	NA	NA	NA	NA	LOC441239	NA	chr7:64348715-64350478	inter
CUST_50468_PI429285431	0.9157845	A	1.423894	A	0.703143229629879	0	lncRNA	54170-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00030536 range=chrX:73492776-73504672 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030536 range=chrX:73492776-73504672 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 73495776	 73498775	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_30961_PI429285431	12.235966	P	11.773752	P	1.37765438351961	0	lncRNA	32749-1_{1..335}	n337087|DQ401704|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343124|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343124|1.7844600|-0.1253718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337087|DQ401704|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343124|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343124|1.7844600|-0.1253718	chr17	  7578247	  7578581	-	NA	NA	NA	NA	WRAP53	NA	chr17:7589389-7589928	inner
CUST_5075_PI429285431	1.0699962	A	1.0155559	A	1.03845615142616	0	lncRNA	5015-1_{1..577}	"transcript_id ""ENST00000390540.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000390540.2"" | genecode_v17"	chr14	106067809	106068385	-	ENSG00000254140.1	ENST00000390540.2	RP11-731F5.1	RP11-731F5.1-001	NA	NA	NA	inter
CUST_41212_PI429285431	5.0092955	P	5.6126328	P	0.658229549927834	0	lncRNA	42097-1_{1..98}	ENST00000583050 ncrna:miRNA chromosome:GRCh37:10:106028080:106028177:-1 gene:ENSG00000266852 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583050 ncrna:miRNA chromosome:GRCh37:10:106028080:106028177:-1 gene:ENSG00000266852 gene_biotype:miRNA transcript_biotype:miRNA	chr10	106028080	106028177	-	ENSG00000266852	ENST00000583050	NA	NA	GSTO2	NA	chr10:106028631-106038177	inter
CUST_18906_PI429285431	0.9194449	A	1.4284384	A	0.702712516137023	0	lncRNA	20597-1_{1..922}	lnc-MYC-2:25	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYC-2:25	chr8	129108764	129109685	+	lnc-MYC-2	lnc-MYC-2:25	ENSG00000249859	PVT1	NA	NA	NA	inter
CUST_43881_PI429285431	0.9261653	A	0.9159736	A	1.00708935948894	0	lncRNA	48600-1_{1..2621}	"gi|225007537|ref|NR_027353.1| Homo sapiens CD8a molecule (CD8A), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225007537|ref|NR_027353.1| Homo sapiens CD8a molecule (CD8A), transcript variant 4, non-coding RNA"	Chr2	 87011728	 87014348	-	925	NR_027353.1	NA	NA	NA	NA	NA	inter
CUST_15268_PI429285431	1.9876478	A	1.2022628	A	1.72355220806911	0	lncRNA	16941-1_{1..363}	lnc-CD99L2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD99L2-2:1	chrX	150564349	150564711	-	lnc-CD99L2-2	lnc-CD99L2-2:1	XLOC_008256	linc-CD99L2-2	VMA21	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90chrX:150565657-150574686"	NA	inter
CUST_26315_PI429285431	7.5225363	P	7.5464387	P	0.983568611337799	0	lncRNA	27822-1_{1..2338}	lnc-B4GALNT3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-B4GALNT3-2:1	chr12	   753125	   755462	+	lnc-B4GALNT3-2	lnc-B4GALNT3-2:1	ENSG00000177406.4	RP11-218M22.1	NINJ2	NA	chr12:743125-765044	inner
CUST_13107_PI429285431	1.293695	A	0.9226122	A	1.2933231569187	0	lncRNA	14731-1_{1..247}	lnc-SLC35G4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC35G4-3:1	chr18	 11186520	 11186766	+	lnc-SLC35G4-3	lnc-SLC35G4-3:1	XLOC_012625	linc-GNAL-3	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80"	NA	inter
CUST_4358_PI429285431	0.93537706	A	0.9551731	A	0.986372142306785	0	lncRNA	4313-1_{1..2941}	"transcript_id ""ENST00000500381.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000500381.2"" | genecode_v17"	chr12	 89404458	 89407398	-	ENSG00000246363.2	ENST00000500381.2	RP11-13A1.1	RP11-13A1.1-001	NA	NA	NA	inter
CUST_2688_PI429285431	0.89789075	A	0.89703393	A	1.00059407876218	0	lncRNA	2674-1_{1..595}	"transcript_id ""ENST00000434562.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434562.1"" | genecode_v17"	chr6	160320218	160320812	+	ENSG00000236823.1	ENST00000434562.1	RP1-249F5.3	RP1-249F5.3-001	MAS1	NA	chr6:160327974-160329108	inter
CUST_27893_PI429285431	2.9209971	A	2.960332	A	0.973103456575655	0	lncRNA	29487-1_{1..466}	n325130|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331961|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331961|-1.1442800|-0.4137275	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325130|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331961|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331961|-1.1442800|-0.4137275	chr2	139943814	139944279	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5697_PI429285431	3.4937682	P	3.8315551	P	0.791254168441525	0	lncRNA	5621-1_{1..340}	"transcript_id ""ENST00000575911.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000575911.1"" | genecode_v17"	chr17	  1145233	  1145572	-	ENSG00000262213.1	ENST00000575911.1	AC144836.1	AC144836.1-001	NA	NA	NA	inter
CUST_28728_PI429285431	2.0761905	A	2.3930712	A	0.802803771788921	0	lncRNA	30428-1_{1..764}	n326119|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046444|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046444|-0.3284860|-0.3863395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326119|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046444|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046444|-0.3284860|-0.3863395	chr10	  2478446	  2479209	-	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30"	NA	inter
CUST_18348_PI429285431	1.1863914	A	0.9240354	A	1.19943585054267	0	lncRNA	20076-1_{1..2056}	lnc-TSPEAR-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TSPEAR-2:2	chr21	 45834918	 45836973	-	lnc-TSPEAR-2	lnc-TSPEAR-2:2	ENSG00000230061	AP001065.2	TRPM2	NA	chr21:45824918-45846623	inner
CUST_10567_PI429285431	4.3476768	P	4.2320123	P	1.08347397472014	0	lncRNA	12099-1_{1..919}	lnc-TSPAN11-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSPAN11-2:4	chr12	 30954635	 30955553	+	lnc-TSPAN11-2	lnc-TSPAN11-2:4	XLOC_009702	linc-TSPAN11-1	NA	NA	NA	inter
CUST_27720_PI429285431	0.90759	A	0.8938498	A	1.00956947832051	0	lncRNA	29300-1_{1..377}	n324933|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079827|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079827|-1.4067800|-0.3920393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324933|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079827|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079827|-1.4067800|-0.3920393	chr20	 55114203	 55114579	+	NA	NA	NA	NA	C20orf107	NA	chr20:55108302-55111576	inter
CUST_31533_PI429285431	2.1317012	A	1.952091	A	1.13257783413882	0	lncRNA	33290-1_{1..702}	n338019|AY358802|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|406|NULL|0.5271580|-0.0860487	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n338019|AY358802|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|406|NULL|0.5271580|-0.0860487	chr22	 30831530	 30832231	+	NA	NA	NA	NA	MTFP1	NA	chr22:30821611-30825041	inter
CUST_11304_PI429285431	5.058653	P	5.5667467	P	0.703150930303651	0	lncRNA	12867-1_{1..625}	lnc-SEMA4D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEMA4D-1:1	chr9	 92215484	 92216108	-	lnc-SEMA4D-1	lnc-SEMA4D-1:1	XLOC_007767	linc-SEMA4D-1	GADD45G	NA	chr9:92219927-92221470	inter
CUST_10791_PI429285431	3.7260344	P	3.9312353	P	0.867417887965303	0	lncRNA	12328-1_{1..695}	lnc-GOLGA7B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GOLGA7B-2:1	chr10	 99600582	 99601276	+	lnc-GOLGA7B-2	lnc-GOLGA7B-2:1	XLOC_008575	linc-GOLGA7B	GOLGA7B	NA	chr10:99609996-99611058	inter
LNCA_21_P0009486	0.9406785	A	1.0611918	A	0.919860313043814	0	lncRNA	TCONS_00026340	NA	NA	NA	NA	XLOC_012690	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012690), lincRNA [TCONS_00026340]"	chr18:54716445-54716504	hs|18q21.31	Agilent_HUMAN_G3V2	TCONS_00026340	TCONS_00026340	chr18	 54716445	 54716504	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9804_PI429285431	4.511122	P	4.488585	P	1.01574411082308	0	lncRNA	11319-3_{6001..6724}	lnc-TCF4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF4-1:2	chr18	 53453380	 53454103	-	lnc-TCF4-1	lnc-TCF4-1:2	XLOC_012849	linc-TCF4-1	NA	NA	NA	inter
CUST_34347_PI429285431	5.424158	P	5.263804	P	1.11756132503812	0	lncRNA	35838-2_{3001..5583}	n341217|CR627312|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3685|NULL|-0.9728220|-0.3593078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341217|CR627312|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3685|NULL|-0.9728220|-0.3593078	chr7	 30121701	 30124283	+	NA	NA	NA	NA	PLEKHA8	NA	chr7:30108701-30134266	inner
LNCA_21_P0006364	2.3538864	A	2.9094663	A	0.680383519006253	0	lncRNA	TCONS_00016666	NA	NA	NA	NA	XLOC_007507	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007507), lincRNA [TCONS_00016666]"	chr9:110273665-110276965	hs|9q31.2	Agilent_HUMAN_G3V2	TCONS_00016666	TCONS_00016666	chr9	110273665	110276965	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44520_PI429285431	2.3918574	A	3.2358394	P	0.557103776154716	0	lncRNA	49116-1_{1..1704}	"gi|310119522|ref|XR_108572.1| PREDICTED: Homo sapiens EGFLAM antisense RNA 2 (EGFLAM-AS2), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|310119522|ref|XR_108572.1| PREDICTED: Homo sapiens EGFLAM antisense RNA 2 (EGFLAM-AS2), misc_RNA"	NA	NA	NA	NA	NA	XR_108572.1	NA	NA	NA	NA	NA	Unknown
CUST_17433_PI429285431	1.8745778	A	2.2192879	A	0.787466196781507	0	lncRNA	19157-1_{1..1071}	lnc-ANGEL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANGEL2-1:1	chr1	213107989	213109059	-	lnc-ANGEL2-1	lnc-ANGEL2-1:1	XLOC_001198	linc-C1orf227-2	NA	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00"	NA	inter
CUST_46350_PI429285431	6.9148045	P	6.615375	P	1.23065766527005	0	lncRNA	50574-1_{1..2613}	"gi|339275852|ref|NR_040251.1| Homo sapiens zinc finger protein 410 (ZNF410), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|339275852|ref|NR_040251.1| Homo sapiens zinc finger protein 410 (ZNF410), transcript variant 6, non-coding RNA"	Chr14	 74353318	 74355930	+	57862	NR_040251.1	NA	NA	NA	NA	NA	inter
CUST_51483_PI429285431	10.313126	P	9.834261	P	1.39364682226637	0	lncRNA	55059-1_{1..862}	hg19_lincRNAsTranscripts_TCONS_l2_00009739 range=chr16:51680005-51680947 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009739 range=chr16:51680005-51680947 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 51680005	 51680866	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40117_PI429285431	8.140915	P	8.030902	P	1.07923796138036	0	lncRNA	40961-1_{1..3000}	n407638|NR_027107|lncRNA|Homosapiens||RefGeneNoncode|NR_027107||3.8007500|-0.2611009	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n407638|NR_027107|lncRNA|Homosapiens||RefGeneNoncode|NR_027107||3.8007500|-0.2611009	chr4	183060158	183063157	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_296_PI429201921	1.0758182	A	1.1864413	A	0.92618795490816	0	lncRNA	206-1_{1..3000}	TC09001922.hg.1	TCONS_l2_00029716-XLOC_l2_014779 // Broad TUCP // linc-FAM75A7-1 chr9:+:40715523-40722679 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:+:40715523-40722679	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00029716-XLOC_l2_014779	linc-FAM75A7-1	chr9	 40715523	 40722679	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16453_PI429285431	4.5124273	P	5.114703	P	0.658714083130675	0	lncRNA	18151-1_{1..614}	lnc-COX10-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COX10-6:2	chr17	 13530885	 13531498	+	lnc-COX10-6	lnc-COX10-6:2	XLOC_012114	linc-COX10	NA	NA	NA	inter
LNCA_21_P0002165	4.857048	P	4.809851	P	1.03325546908027	0	lncRNA	TCONS_00003563	NA	NA	NA	NA	XLOC_001338	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001338), lincRNA [TCONS_00003563]"	chr2:9708515-9708574	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_00003563	TCONS_00003563	chr2	  9708515	  9708574	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39255_PI429285431	1.3871272	A	1.7264826	A	0.790394383303731	0	lncRNA	40226-1_{1..1646}	n386139|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bmx.1||1.3711100|-0.1927229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386139|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bmx.1||1.3711100|-0.1927229	chr15	 84906669	 84908314	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_29248_PI429285431	4.837758	P	5.193619	P	0.781403162754097	0	lncRNA	30999-1_{1..222}	n332333|FJ648810|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558863|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558863|0.1623380|-0.1034116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332333|FJ648810|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558863|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558863|0.1623380|-0.1034116	chr16	 69140512	 69140733	+	NA	NA	NA	NA	CHTF8	NA	chr16:69151912-69153415	inner
CUST_42005_PI429285431	1.4403633	A	1.5536706	A	0.924466341992757	0	lncRNA	43849-1_{1..88}	ENST00000408818 ncrna:miRNA chromosome:GRCh37:14:101491901:101491988:1 gene:ENSG00000221745 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408818 ncrna:miRNA chromosome:GRCh37:14:101491901:101491988:1 gene:ENSG00000221745 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101491901	101491988	+	ENSG00000221745	ENST00000408818	NA	NA	NA	NA	NA	inter
CUST_9489_PI429285431	0.9848832	A	0.96515	A	1.01377198390987	0	lncRNA	10996-1_{1..1751}	lnc-GLIPR1L1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLIPR1L1-1:3	chr12	 75644273	 75646023	+	lnc-GLIPR1L1-1	lnc-GLIPR1L1-1:3	XLOC_009807	linc-GLIPR1L1-1	CAPS2	NA	chr12:75651515-75655645	inter
CUST_52015_PI429285431	0.9515258	A	0.97230643	A	0.985699206724715	0	lncRNA	55545-1_{1..920}	hg19_lincRNAsTranscripts_TCONS_l2_00017419 range=chr21:15281895-15307976 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017419 range=chr21:15281895-15307976 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 15281895	 15282814	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49675_PI429285431	5.6524534	P	5.858627	P	0.866833250889881	0	lncRNA	53454-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026960 range=chr7:149244462-149321836 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026960 range=chr7:149244462-149321836 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	149244462	149247461	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33930_PI429285431	1.951096	A	1.8096683	A	1.10299610778096	0	lncRNA	35471-1_{1..2248}	n340728|AK025239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3191|NULL|3.2593000|-0.2408561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340728|AK025239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3191|NULL|3.2593000|-0.2408561	chr17	 46694456	 46696703	-	NA	NA	NA	NA	HOXB9	NA	chr17:46698518-46703835	inner
CUST_51223_PI429285431	4.1617837	P	3.9672484	P	1.14435549803383	0	lncRNA	54841-1_{1..1645}	hg19_lincRNAsTranscripts_TCONS_l2_00008913 range=chr15:22447232-22466635 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008913 range=chr15:22447232-22466635 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 22447232	 22448876	-	NA	NA	NA	NA	LOC642131	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60chr15:22471454-22473353"	NA	inter
CUST_44257_PI429285431	3.9079576	P	4.3542066	P	0.733948632212935	0	lncRNA	48901-1_{1..843}	"gi|310119291|ref|XR_108497.1| PREDICTED: Homo sapiens uncharacterized LOC100507291, transcript variant 3 (LOC100507291), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310119291|ref|XR_108497.1| PREDICTED: Homo sapiens uncharacterized LOC100507291, transcript variant 3 (LOC100507291), misc_RNA"	NA	NA	NA	NA	NA	XR_108497.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001762	2.9257922	A	2.9340549	A	0.994289102320229	0	lncRNA	XR_110856	XR_110856	XR_110856	NA	Hs.121192	LOC100506929	uncharacterized LOC100506929	ENST00000431139	THC2667330	NA	"PREDICTED: Homo sapiens hypothetical LOC100506929 (LOC100506929), miscRNA [XR_110856]"	chr1:240902808-240902749	hs|1q43	Agilent_HUMAN_G3V2	XR_110856	XR_110856	chr1	240902749	240902808	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30157_PI429285431	8.63147	P	8.862476	P	0.852040551530462	0	lncRNA	31931-1_{1..282}	n334831|AJ297362|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246734|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246734|0.4902090|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334831|AJ297362|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246734|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246734|0.4902090|-1.0000000	chr17	  5341567	  5341848	-	NA	NA	NA	NA	RPAIN	NA	chr17:5331567-5336340	inner
CUST_2615_PI429285431	0.92725027	A	1.3264085	A	0.758300600235218	0	lncRNA	2602-1_{1..786}	"transcript_id ""ENST00000446358.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446358.1"" | genecode_v17"	chr6	114802589	114803374	-	ENSG00000232395.1	ENST00000446358.1	RP3-399L15.1	RP3-399L15.1-002	NA	NA	NA	inter
CUST_22303_PI429285431	2.9849346	A	3.7294939	P	0.596850163469122	0	lncRNA	23902-1_{1..549}	lnc-NCF4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NCF4-1:1	chr22	 37215745	 37216293	+	lnc-NCF4-1	lnc-NCF4-1:1	ENSG00000234979.1	CITF22-24E5.1	PVALB	NA	chr22:37205745-37215517	inter
CUST_40671_PI429285431	1.7182841	A	2.7408376	A	0.49224433224949	0	lncRNA	41405-1_{1..1057}	n410226|NR_037170_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037170_3||-0.3785590|-0.2643710	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410226|NR_037170_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037170_3||-0.3785590|-0.2643710	chr6	  3399751	  3400807	-	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.21;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70chr6:3389751-3411315"	NA	inner
CUST_40278_PI429285431	3.5629911	P	4.0660605	P	0.705603978221815	0	lncRNA	41087-2_{3001..3156}	n408225|NR_028387_4|lncRNA|Homosapiens||RefGeneNoncode|NR_028387_4||0.0027761|-0.2480897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408225|NR_028387_4|lncRNA|Homosapiens||RefGeneNoncode|NR_028387_4||0.0027761|-0.2480897	chr6	  4706244	  4706399	-	NA	NA	NA	NA	CDYL	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PSMC1:range=chr14:90722942-907387515'pad=0,hg19_refFlat_PSMC1:range=chr14:90722942-907387515'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20chr6:4702676-4720990"	NA	inter
CUST_23634_PI429285431	0.9299497	A	0.9307427	A	0.99945048532434	0	lncRNA	25199-1_{1..554}	lnc-LYPD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-LYPD1-1:1	chr2	134191067	134191620	-	lnc-LYPD1-1	lnc-LYPD1-1:1	ENSG00000232474.1	NCKAP5-IT1	NCKAP5	NA	chr2:134181067-134201468	inner
CUST_24356_PI429285431	0.9163835	A	1.7387419	A	0.565516726072619	0	lncRNA	25908-1_{1..767}	lnc-IRF1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IRF1-2:1	chr5	131761974	131762740	-	lnc-IRF1-2	lnc-IRF1-2:1	ENSG00000238160.1	AC116366.5	C5orf56	NA	chr5:131751974-131772406	inter
CUST_42611_PI429285431	8.742453	P	8.63703	P	1.07580977299798	0	lncRNA	45473-1_{1..139}	ENST00000516773 ncrna:snoRNA chromosome:GRCh37:9:133896555:133896693:-1 gene:ENSG00000252582 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516773 ncrna:snoRNA chromosome:GRCh37:9:133896555:133896693:-1 gene:ENSG00000252582 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	133896555	133896693	-	ENSG00000252582	ENST00000516773	NA	NA	LAMC3	NA	chr9:133886555-133906693	inner
CUST_17798_PI429285431	0.9226973	A	0.91764987	A	1.00350473915968	0	lncRNA	19530-1_{1..1753}	lnc-DDX18-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DDX18-1:3	chr2	118595234	118596986	+	lnc-DDX18-1	lnc-DDX18-1:3	XLOC_001636	linc-INSIG2-2	DDX18	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70chr2:118585234-118589953"	NA	inter
CUST_2291_PI429285431	0.93011844	A	1.1753522	A	0.843679083660973	0	lncRNA	2283-1_{1..316}	"transcript_id ""ENST00000524083.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524083.1"" | genecode_v17"	chr5	104072462	104072777	-	ENSG00000251574.2	ENST00000524083.1	RP11-6N13.1	RP11-6N13.1-009	NA	NA	NA	inter
CUST_1730_PI429285431	0.92661697	A	0.9294659	A	0.998027220695032	0	lncRNA	1716-1_{1..440}	"transcript_id ""ENST00000512581.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512581.1"" | genecode_v17"	chr4	 33777969	 33778408	-	ENSG00000250954.1	ENST00000512581.1	RP11-79E3.3	RP11-79E3.3-002	NA	NA	NA	inter
CUST_27655_PI429285431	1.466845	A	1.7354246	A	0.830136451342345	0	lncRNA	29233-1_{1..847}	n324862|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171077|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171077|-1.0850900|-0.3730664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324862|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171077|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171077|-1.0850900|-0.3730664	chr21	 24337442	 24338288	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80"	NA	inter
CUST_17212_PI429285431	0.9226687	A	0.90758216	A	1.01051206019127	0	lncRNA	18926-1_{1..1544}	lnc-ERP44-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERP44-3:2	chr9	102582103	102583646	-	lnc-ERP44-3	lnc-ERP44-3:2	XLOC_007808	linc-ALG2-5	NR4A3	NA	chr9:102584137-102592171	inter
CUST_1482_PI429285431	0.95071393	A	0.9164157	A	1.02405856915562	0	lncRNA	1469-1_{1..516}	"transcript_id ""ENST00000470860.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000470860.1"" | genecode_v17"	chr3	146639710	146640225	+	ENSG00000242671.1	ENST00000470860.1	RP11-232M24.1	RP11-232M24.1-002	NA	NA	NA	inter
CUST_2744_PI429285431	6.7113347	P	7.0487857	P	0.791438416124399	0	lncRNA	2728-1_{1..573}	"transcript_id ""ENST00000532358.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532358.1"" | genecode_v17"	chr7	  1609782	  1610354	+	ENSG00000230487.3	ENST00000532358.1	PSMG3-AS1	PSMG3-AS1-005	PSMG3	NA	chr7:1606968-1609668	inter
CUST_14173_PI429285431	1.4179814	A	1.8354465	A	0.748739047743447	0	lncRNA	15826-1_{1..415}	lnc-PCDH20-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH20-9:1	chr13	 64312042	 64312456	-	lnc-PCDH20-9	lnc-PCDH20-9:1	XLOC_010643	linc-PCDH20-8	NA	NA	NA	inter
CUST_1119_PI429285431	0.90569735	A	0.9009185	A	1.00331793861695	0	lncRNA	1108-1_{1..602}	"transcript_id ""ENST00000594837.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594837.1"" | genecode_v17"	chr2	145780799	145781400	+	ENSG00000226674.3	ENST00000594837.1	AC074093.1	AC074093.1-017	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40"	NA	inter
CUST_34913_PI429285431	1.5778991	A	1.9903623	A	0.751339470914594	0	lncRNA	36336-1_{1..2400}	n341832|AK125676|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4311|NULL|-1.1102600|-0.2818808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341832|AK125676|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4311|NULL|-1.1102600|-0.2818808	chr12	 13153363	 13155762	+	NA	NA	NA	NA	KIAA1467	NA	chr12:13174199-13203613	inter
CUST_50941_PI429285431	1.1350967	A	1.3598037	A	0.855768807939876	0	lncRNA	54583-1_{1..1392}	hg19_lincRNAsTranscripts_TCONS_00079058_HOTAIR range=chr12:54356518-54367517 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00079058_HOTAIR range=chr12:54356518-54367517 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 54356518	 54357909	-	NA	NA	NA	NA	HOXC11	"hg19_refFlat_HOXC11:range=chr12:54367026-543691975'pad=0,hg19_refFlat_HOXC11:range=chr12:54367026-543691975'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.70chr12:54366910-54370203"	NA	inter
CUST_21710_PI429285431	1.4842945	A	0.96391445	A	1.43433304544658	0	lncRNA	23320-1_{1..797}	lnc-ATXN7-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATXN7-7:1	chr3	 64548636	 64549432	+	lnc-ATXN7-7	lnc-ATXN7-7:1	ENSG00000241158.1	ADAMTS9-AS1	ADAMTS9	"hg19_refFlat_ADAMTS9:range=chr3:64507847-646733335'pad=0,hg19_refFlat_ADAMTS9:range=chr3:64507847-646733335'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30chr3:64538636-64559001"	NA	inner
CUST_49064_PI429285431	1.0678767	A	0.90135574	A	1.12234868967141	0	lncRNA	52889-1_{1..204}	hg19_lincRNAsTranscripts_TCONS_l2_00021811 range=chr4:1110052-1116962 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021811 range=chr4:1110052-1116962 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  1110052	  1110255	-	NA	NA	NA	NA	RNF212	NA	chr4:1100052-1107352	inter
CUST_2444_PI429285431	0.91555685	A	0.91134787	A	1.0029217024974	0	lncRNA	2436-1_{1..920}	"transcript_id ""ENST00000510029.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510029.1"" | genecode_v17"	chr5	175564160	175565079	+	ENSG00000251623.1	ENST00000510029.1	RP11-826N14.4	RP11-826N14.4-001	NA	NA	NA	inter
CUST_36377_PI429285431	1.9387937	A	2.4720411	A	0.690997597648386	0	lncRNA	37596-1_{1..1865}	n344895|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_444|NULL|-1.3095800|-0.1860669	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344895|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_444|NULL|-1.3095800|-0.1860669	chr6	 33840230	 33842094	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38741_PI429285431	0.92286736	A	0.92658806	A	0.997424330029943	0	lncRNA	39733-1_{1..2405}	n384262|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003dkz.2||3.0547300|-0.3341499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384262|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003dkz.2||3.0547300|-0.3341499	chr3	 59956577	 59958981	-	NA	NA	NA	NA	FHIT	NA	chr3:59946577-59968982	inner
CUST_46377_PI429285431	1.2097924	A	1.4344704	A	0.855786010151126	0	lncRNA	50594-1_{1..1291}	"gi|208022650|ref|NR_024184.1| Homo sapiens long intergenic non-protein coding RNA 521 (LINC00521), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|208022650|ref|NR_024184.1| Homo sapiens long intergenic non-protein coding RNA 521 (LINC00521), transcript variant 3, non-coding RNA"	Chr14	 94463642	 94464932	+	256369	NR_024184.1	NA	NA	NA	NA	NA	inter
CUST_17367_PI429285431	1.6060318	A	2.1883812	A	0.667875269817164	0	lncRNA	19087-1_{1..496}	lnc-ATP11B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP11B-1:1	chr3	182704347	182704842	+	lnc-ATP11B-1	lnc-ATP11B-1:1	XLOC_002945	linc-B3GNT5	DCUN1D1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-26.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10chr3:182694347-182698326"	NA	inter
CUST_28960_PI429285431	0.9283982	A	1.4133976	A	0.714497367021586	0	lncRNA	30681-1_{1..268}	n326390|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046025|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046025|-1.4642500|-0.4727570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326390|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046025|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046025|-1.4642500|-0.4727570	chr1	147194954	147195221	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41497_PI429285431	8.222564	P	8.107122	P	1.08330688856282	0	lncRNA	42712-1_{1..77}	ENST00000459337 ncrna:miRNA chromosome:GRCh37:16:15104178:15104254:-1 gene:ENSG00000238728 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459337 ncrna:miRNA chromosome:GRCh37:16:15104178:15104254:-1 gene:ENSG00000238728 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 15104178	 15104254	-	ENSG00000238728	ENST00000459337	NA	NA	PDXDC1	NA	chr16:15094178-15114254	inner
CUST_15027_PI429285431	2.7655056	A	2.803824	A	0.973789331407488	0	lncRNA	16690-1_{1..1178}	lnc-LYPLAL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYPLAL1-2:1	chr1	219617694	219618871	+	lnc-LYPLAL1-2	lnc-LYPLAL1-2:1	XLOC_000567	linc-IARS2-2	NA	NA	NA	inter
CUST_3304_PI429285431	0.8970215	A	1.5980444	A	0.615135908202481	0	lncRNA	3282-1_{1..734}	"transcript_id ""ENST00000519319.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519319.1"" | genecode_v17"	chr8	127859300	127860033	+	ENSG00000253438.2	ENST00000519319.1	PCAT1	PCAT1-001	NA	NA	NA	inter
CUST_40350_PI429285431	1.295375	A	0.9002826	A	1.31502698077737	0	lncRNA	41152-1_{1..2981}	n409070|NR_033132|lncRNA|Homosapiens||RefGeneNoncode|NR_033132||1.5888800|-0.4437356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409070|NR_033132|lncRNA|Homosapiens||RefGeneNoncode|NR_033132||1.5888800|-0.4437356	chrX	110924884	110927864	+	NA	NA	NA	NA	ALG13	NA	chrX:110924346-110943623	inner
CUST_49953_PI429285431	2.799162	P	2.5908298	A	1.1553517892659	0	lncRNA	53703-1_{1..333}	hg19_lincRNAsTranscripts_TCONS_l2_00026892 range=chr7:130480541-130517579 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026892 range=chr7:130480541-130517579 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	130480541	130480873	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10881_PI429285431	0.9241648	A	0.91038644	A	1.00959618228753	0	lncRNA	12421-1_{1..1914}	lnc-ZNF507-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF507-5:1	chr19	 32083315	 32085228	+	lnc-ZNF507-5	lnc-ZNF507-5:1	XLOC_013037	linc-ZNF507-5	THEG5	"hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0,hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20chr19:32083187-32083945"	NA	inner
CUST_7753_PI429285431	1.4159502	A	2.1779704	A	0.589670039764671	0	lncRNA	9380-2_{3001..3435}	lnc-COQ9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COQ9-1:1	chr16	 57482995	 57483429	+	lnc-COQ9-1	lnc-COQ9-1:1	ENSG00000250743	ENST00000509888	CIAPIN1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.10;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70chr16:57469995-57481369"	NA	inner
CUST_18369_PI429285431	1.1585978	A	1.7505512	A	0.66344399963063	0	lncRNA	20097-1_{1..791}	lnc-TMEM75-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM75-1:1	chr8	128746071	128746861	-	lnc-TMEM75-1	lnc-TMEM75-1:1	ENSG00000249375	RP11-1136L8.1	MYC	NA	chr8:128748315-128753680	inter
CUST_40982_PI429285431	3.2633355	P	2.9182446	A	1.27023101356296	0	lncRNA	41651-1_{1..756}	n411112|NR_038936|lncRNA|Homosapiens||RefGeneNoncode|NR_038936||-1.0743400|-0.2401704	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411112|NR_038936|lncRNA|Homosapiens||RefGeneNoncode|NR_038936||-1.0743400|-0.2401704	chr3	112414247	112415002	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34054_PI429285431	5.0961366	P	4.7707763	P	1.25297731927288	0	lncRNA	35584-1_{1..1731}	n340872|BC038747|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3337|NULL|-0.9277100|-0.2668302	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340872|BC038747|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3337|NULL|-0.9277100|-0.2668302	chr17	 74668023	 74669753	+	NA	NA	NA	NA	MXRA7	NA	chr17:74671809-74679740	inter
CUST_11281_PI429285431	4.0142984	P	3.4249532	P	1.50456371191185	0	lncRNA	12841-1_{1..542}	lnc-TCF7L2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF7L2-1:3	chr10	114704018	114704559	+	lnc-TCF7L2-1	lnc-TCF7L2-1:3	XLOC_008619	linc-TCF7L2-1	TCF7L2	NA	chr10:114710009-114714207	inter
CUST_10659_PI429285431	0.93713796	A	0.9038454	A	1.02334496989334	0	lncRNA	12192-1_{1..1477}	lnc-CALCOCO1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CALCOCO1-1:1	chr12	 54145558	 54147034	-	lnc-CALCOCO1-1	lnc-CALCOCO1-1:1	XLOC_010084	linc-CALCOCO1-6	NA	NA	NA	inter
CUST_51895_PI429285431	6.3632526	P	6.4218626	P	0.96018879129812	0	lncRNA	55442-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00012718 range=chr19:56117059-56123017 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012718 range=chr19:56117059-56123017 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 56117059	 56120058	+	NA	NA	NA	NA	ZNF784	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90chr19:56132107-56133017"	NA	inter
LNCA_21_P0002878	0.98753524	A	0.9237515	A	1.0452034124605	0	lncRNA	ENST00000505557	NA	NA	NA	NA	XLOC_003256	NA	ENST00000505557	NA	NA	"BROAD Institute lincRNA (XLOC_003256), lincRNA [TCONS_00005829]"	chr3:132755787-132755728	hs|3q22.1	Agilent_HUMAN_G3V2	ENST00000505557	ENST00000505557	chr3	132755728	132755787	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3025_PI429285431	8.385693	P	8.792316	P	0.754387146387363	0	lncRNA	3004-1_{1..362}	"transcript_id ""ENST00000521016.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521016.1"" | genecode_v17"	chr8	 19111751	 19112112	-	ENSG00000253280.1	ENST00000521016.1	RP11-618M23.4	RP11-618M23.4-001	SH2D4A	NA	chr8:19101751-19124844	inter
CUST_47064_PI429285431	8.369449	P	9.082184	P	0.610162321901034	0	lncRNA	51151-1_{1..1245}	"gi|328802709|ref|NR_038104.1| Homo sapiens trans-2,3-enoyl-CoA reductase (TECR), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|328802709|ref|NR_038104.1| Homo sapiens trans-2,3-enoyl-CoA reductase (TECR), transcript variant 3, non-coding RNA"	Chr19	 14640379	 14641623	+	9524	NR_038104.1	NA	NA	NA	NA	NA	inter
CUST_42903_PI429285431	6.628896	P	7.298639	P	0.628618658676874	0	lncRNA	46000-1_{1..128}	ENST00000408471 ncrna:snoRNA chromosome:GRCh37:21:35828408:35828535:-1 gene:ENSG00000221398 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408471 ncrna:snoRNA chromosome:GRCh37:21:35828408:35828535:-1 gene:ENSG00000221398 gene_biotype:snoRNA transcript_biotype:snoRNA	chr21	 35828408	 35828535	-	ENSG00000221398	ENST00000408471	NA	NA	KCNE1	NA	chr21:35818988-35838535	inner
CUST_51581_PI429285431	5.9128876	P	6.239277	P	0.797529948241221	0	lncRNA	55146-1_{1..1268}	hg19_lincRNAsTranscripts_TCONS_l2_00010615 range=chr17:20322663-20327916 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010615 range=chr17:20322663-20327916 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 20322663	 20323930	+	NA	NA	NA	NA	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-17.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00"	NA	inter
CUST_20534_PI429285431	0.92865616	A	1.3196415	A	0.762608575864539	0	lncRNA	22176-1_{1..490}	lnc-GPR172B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR172B-2:2	chr17	  4981182	  4981671	-	lnc-GPR172B-2	lnc-GPR172B-2:2	ENSG00000262693.1	RP11-46I8.3	ZFP3	NA	chr17:4971182-4991408	inter
LNCA_33_P3217470	0.9638488	A	0.9186601	A	1.03181812906042	0	lncRNA	ENST00000420998	XR_109770	XR_109770	NA	NA	NA	NA	ENST00000420998	THC2649461	NA	"PREDICTED: Homo sapiens hypothetical LOC100506671 (LOC100506671), miscRNA [XR_109770]"	chrX:71932130-71932189	hs|Xq13.2	Agilent_HUMAN_G3V2	ENST00000420998	ENST00000420998	chrX	 71932130	 71932189	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31857_PI429285431	0.9159457	A	1.2788569	A	0.777593896456704	0	lncRNA	33590-1_{1..1583}	n338406|AK123455|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|803|NULL|-0.9982810|-0.3471558	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338406|AK123455|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|803|NULL|-0.9982810|-0.3471558	chr14	 75477971	 75479553	-	NA	NA	NA	NA	MLH3	NA	chr14:75480467-75489554	inter
CUST_22077_PI429285431	0.92081034	A	0.92357093	A	0.99808833438957	0	lncRNA	23683-1_{1..462}	lnc-KCNMA1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNMA1-2:1	chr10	 78044733	 78045194	-	lnc-KCNMA1-2	lnc-KCNMA1-2:1	ENSG00000232704.1	RP11-369F10.3	C10orf11	NA	chr10:78034733-78054842	inner
CUST_47917_PI429285431	3.1006	A	3.2846355	A	0.880237353538247	0	lncRNA	51808-1_{1..431}	"gi|410172062|ref|XR_171575.1| PREDICTED: Homo sapiens uncharacterized LOC101060264, transcript variant 2 (LOC101060264), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410172062|ref|XR_171575.1| PREDICTED: Homo sapiens uncharacterized LOC101060264, transcript variant 2 (LOC101060264), misc_RNA"	NA	NA	NA	NA	NA	XR_171575.1	NA	NA	NA	NA	NA	Unknown
CUST_38435_PI429285431	2.5669065	A	2.4616299	A	1.07570060886048	0	lncRNA	39462-2_{3001..6000}	n382643|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002baz.2||1.7861900|-0.1938776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382643|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002baz.2||1.7861900|-0.1938776	chr15	 76028203	 76031202	-	NA	NA	NA	NA	LOC100652820	"hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chr15:76030311-76031568"	NA	inter
CUST_44541_PI429285431	4.0330734	P	2.8057244	A	2.34136360989192	0	lncRNA	49131-2_{3001..6000}	"gi|402478650|ref|NR_073106.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402478650|ref|NR_073106.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 5, non-coding RNA"	Chr5	 52288156	 52291155	+	3673	NR_073106.1	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.21;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80"	NA	inter
CUST_34692_PI429285431	5.0789385	P	2.9922876	P	4.24760879509102	0	lncRNA	36144-1_{1..3000}	n341598|AK125888|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4069|NULL|-0.9005200|-0.2820388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341598|AK125888|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4069|NULL|-0.9005200|-0.2820388	chr8	124510129	124513128	-	NA	NA	NA	NA	FBXO32	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20chr8:124510127-124525058"	NA	inner
CUST_7823_PI429285431	3.6231127	P	3.875412	P	0.839557301198817	0	lncRNA	9447-1_{1..362}	lnc-NECAB1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NECAB1-1:3	chr8	 91668742	 91669103	+	lnc-NECAB1-1	lnc-NECAB1-1:3	ENSG00000246792	RP11-68L18.1	NA	NA	NA	inter
CUST_32331_PI429285431	0.9044153	A	0.8983211	A	1.0042331119615	0	lncRNA	34013-1_{1..2809}	n338910|D86358|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1336|NULL|7.3199400|-0.2337920	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338910|D86358|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1336|NULL|7.3199400|-0.2337920	chr19	 52020950	 52023758	-	NA	NA	NA	NA	SIGLEC6	NA	chr19:52011657-52035110	inner
CUST_20963_PI429285431	3.3211892	P	3.6779735	P	0.780903238165099	0	lncRNA	22594-1_{1..547}	lnc-TMC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMC3-1:1	chr15	 81602112	 81602658	-	lnc-TMC3-1	lnc-TMC3-1:1	ENSG00000259190.1	RP11-761I4.1	IL16	NA	chr15:81592112-81605104	inner
CUST_2237_PI429285431	0.9205997	A	2.089254	A	0.444836076055748	0	lncRNA	2229-1_{1..762}	"transcript_id ""ENST00000506664.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506664.1"" | genecode_v17"	chr5	 87836329	 87837090	-	ENSG00000245526.3	ENST00000506664.1	LINC00461	LINC00461-012	NA	NA	NA	inter
CUST_6340_PI429285431	1.9152579	A	2.447668	A	0.691398749796422	0	lncRNA	6264-1_{1..391}	"transcript_id ""ENST00000591837.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591837.1"" | genecode_v17"	chr19	 13242385	 13242775	+	ENSG00000266897.1	ENST00000591837.1	AC005546.2	AC005546.2-002	NACC1	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.04;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_C11orf44:range=chr11:130542874-1305840925'pad=0,hg19_refFlat_C11orf44:range=chr11:130542874-1305840925'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.40chr19:13232385-13251959"	NA	inner
LNCA_19_P00320866	9.015646	P	9.424606	P	0.75316611522619	0	lncRNA	ENST00000436710	XR_108951	XR_108951	NA	NA	LOC100506119	NA	ENST00000436710	THC2610745	NA	"PREDICTED: Homo sapiens hypothetical LOC100506119, transcript variant 1 (LOC100506119), miscRNA [XR_108951]"	chr9:132104263-132104322	hs|9q34.11	Agilent_HUMAN_G3V2	ENST00000436710	ENST00000436710	chr9	132104263	132104322	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4701_PI429285431	1.0301019	M	1.2827002	A	0.839383320132218	0	lncRNA	4648-1_{1..344}	"transcript_id ""ENST00000449453.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449453.1"" | genecode_v17"	chr13	114580581	114580924	+	ENSG00000237699.1	ENST00000449453.1	RP11-199F6.4	RP11-199F6.4-001	NA	NA	NA	inter
CUST_8791_PI429285431	8.584053	P	8.778091	P	0.874155595204663	0	lncRNA	10331-1_{1..1093}	lnc-BPHL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BPHL-1:1	chr6	  3157680	  3158772	+	lnc-BPHL-1	lnc-BPHL-1:1	ENSG00000244911	ENST00000502201	BPHL	NA	chr6:3147680-3153432	inner
CUST_37961_PI429285431	8.511226	P	8.753132	P	0.845627383140816	0	lncRNA	39049-1_{1..636}	n346508|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2058|NULL|-1.3058500|-0.2289550	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346508|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2058|NULL|-1.3058500|-0.2289550	chr12	 79939851	 79940486	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43735_PI429285431	1.8099414	A	1.9498687	A	0.907564887993222	0	lncRNA	48479-1_{1..785}	"gi|310118835|ref|XR_110844.1| PREDICTED: Homo sapiens ITPKB intronic transcript 1 (non-protein coding) (ITPKB-IT1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310118835|ref|XR_110844.1| PREDICTED: Homo sapiens ITPKB intronic transcript 1 (non-protein coding) (ITPKB-IT1), misc_RNA"	NA	NA	NA	NA	NA	XR_110844.1	NA	NA	NA	NA	NA	Unknown
CUST_36446_PI429285431	4.114109	P	2.775538	A	2.52900694702454	0	lncRNA	37660-1_{1..3000}	n344960|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_509|NULL|-1.3734900|-0.3539059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344960|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_509|NULL|-1.3734900|-0.3539059	chr7	 79084201	 79087200	+	NA	NA	NA	NA	MAGI2	NA	chr7:79074201-79082890	inter
CUST_39094_PI429285431	1.8931466	A	2.687375	A	0.576651502826565	0	lncRNA	40070-1_{1..417}	n385646|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azo.1||-0.9903270|-0.2328566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385646|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azo.1||-0.9903270|-0.2328566	chr9	102117690	102118106	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41295_PI429285431	0.90435565	A	0.92184174	A	0.987952722615916	0	lncRNA	42289-1_{1..82}	ENST00000584290 ncrna:miRNA chromosome:GRCh37:X:120504826:120504907:1 gene:ENSG00000265456 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584290 ncrna:miRNA chromosome:GRCh37:X:120504826:120504907:1 gene:ENSG00000265456 gene_biotype:miRNA transcript_biotype:miRNA	chrX	120504826	120504907	+	ENSG00000265456	ENST00000584290	NA	NA	NA	NA	NA	inter
CUST_44253_PI429285431	0.90392363	A	0.89769787	A	1.00432469259951	0	lncRNA	48898-1_{1..531}	"gi|224465196|ref|NR_027070.1| Homo sapiens polled intersex syndrome regulated transcript 1 (non-protein coding RNA) (PISRT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224465196|ref|NR_027070.1| Homo sapiens polled intersex syndrome regulated transcript 1 (non-protein coding RNA) (PISRT1), non-coding RNA"	Chr3	138951834	138952364	-	140464	NR_027070.1	NA	NA	NA	NA	NA	inter
CUST_14849_PI429285431	1.1655022	A	0.9351835	A	1.1730940641357	0	lncRNA	16511-1_{1..206}	lnc-NDC80-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDC80-3:1	chr18	  1972852	  1973057	+	lnc-NDC80-3	lnc-NDC80-3:1	XLOC_012607	linc-NDC80-3	NA	NA	NA	inter
CUST_9707_PI429285431	1.0369542	A	0.9204843	A	1.08407900456869	0	lncRNA	11222-2_{3001..4899}	lnc-HOXA13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOXA13-1:1	chr7	 27235227	 27237125	-	lnc-HOXA13-1	lnc-HOXA13-1:1	XLOC_006390	linc-HOXA11	HOXA13	NA	chr7:27236499-27239725	inter
CUST_1358_PI429285431	3.7745774	P	3.923006	P	0.902232649768299	0	lncRNA	1346-1_{1..696}	"transcript_id ""ENST00000497258.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000497258.1"" | genecode_v17"	chr3	 59365750	 59366445	-	ENSG00000243903.1	ENST00000497258.1	RP11-285B24.1	RP11-285B24.1-001	NA	NA	NA	inter
CUST_26607_PI429285431	0.9022596	A	0.9018458	A	1.00028686544134	0	lncRNA	28110-1_{1..3000}	lnc-KIAA0825-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-KIAA0825-1:1	chr5	 93196375	 93199374	-	lnc-KIAA0825-1	lnc-KIAA0825-1:1	ENSG00000251023.1	RP11-549J18.1	FAM172A	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-31.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80chr5:93186375-93209531"	NA	inter
CUST_32054_PI429285431	0.9245361	A	0.9177973	A	1.0046819062536	0	lncRNA	33769-1_{1..472}	n338618|X89666|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1024|NULL|2.8299800|-0.1225686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338618|X89666|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1024|NULL|2.8299800|-0.1225686	chr1	248402604	248403075	+	NA	NA	NA	NA	OR2M4	NA	chr1:248402231-248403166	inner
CUST_29711_PI429285431	0.9143643	A	0.906529	A	1.00544579080691	0	lncRNA	31473-1_{1..285}	n333378|BC003680|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086273|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086273|0.8675450|-0.3198452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333378|BC003680|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086273|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086273|0.8675450|-0.3198452	chr12	 48096426	 48096710	-	NA	NA	NA	NA	RPAP3	NA	chr12:48086426-48099844	inner
CUST_4434_PI429285431	5.601091	P	5.6166706	P	0.989259143583408	0	lncRNA	4384-1_{1..693}	"transcript_id ""ENST00000537366.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537366.1"" | genecode_v17"	chr12	119825792	119826484	-	ENSG00000248636.2	ENST00000537366.1	RP11-768F21.1	RP11-768F21.1-002	TMEM233	NA	chr12:120031264-120079363	inner
CUST_46487_PI429285431	6.993024	P	8.534431	P	0.343550240952206	0	lncRNA	50682-1_{1..3000}	"gi|236465583|ref|NR_027654.1| Homo sapiens SMAD family member 6 (SMAD6), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|236465583|ref|NR_027654.1| Homo sapiens SMAD family member 6 (SMAD6), transcript variant 3, non-coding RNA"	Chr15	 66994674	 66997673	+	4091	NR_027654.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0005527	0.9246236	A	0.9146949	A	1.00690578613948	0	lncRNA	TCONS_00013944	NA	NA	NA	NA	XLOC_006589	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006589), lincRNA [TCONS_00013944]"	chr7:123517957-123517898	hs|7q31.32	Agilent_HUMAN_G3V2	TCONS_00013944	TCONS_00013944	chr7	123517898	123517957	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22933_PI429285431	0.9109956	A	1.8992457	A	0.504088832993224	0	lncRNA	24509-1_{1..3000}	lnc-ZNF37A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-ZNF37A-3:1	chr10	 38736592	 38739591	+	lnc-ZNF37A-3	lnc-ZNF37A-3:1	ENSG00000225119.2	RP11-291L22.3	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10"	NA	inter
CUST_27693_PI429285431	0.9192802	A	0.9112383	A	1.00558978518462	0	lncRNA	29272-1_{1..550}	n324901|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158059|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158059|-1.0505500|-0.2942618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324901|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158059|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158059|-1.0505500|-0.2942618	chr21	 16925016	 16925565	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27349_PI429285431	0.9247901	A	0.91194093	A	1.0089461456451	0	lncRNA	28911-1_{1..2551}	n324509|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040804|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040804|-0.2934870|-0.3617534	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324509|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040804|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040804|-0.2934870|-0.3617534	chr6	 46829441	 46831991	+	NA	NA	NA	NA	GPR116	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_GPR116:range=chr6:46821729-468744995'pad=0,hg19_refFlat_GPR116:range=chr6:46821729-468744995'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70chr6:46820242-46844120"	NA	inner
CUST_27975_PI429285431	1.0992929	A	1.0675496	A	1.02224662518423	0	lncRNA	29580-1_{1..236}	n325225|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329808|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329808|-0.9618390|-0.4679221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325225|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329808|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329808|-0.9618390|-0.4679221	chr2	100705114	100705349	-	NA	NA	NA	NA	AFF3	NA	chr2:100695114-100715776	inner
CUST_21061_PI429285431	6.082693	P	6.1263695	P	0.970179432307198	0	lncRNA	22688-1_{1..401}	lnc-GLUD1-4:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLUD1-4:9	chr10	 89096543	 89096943	-	lnc-GLUD1-4	lnc-GLUD1-4:9	ENSG00000223482.1	RP11-322M19.1	NA	NA	NA	inter
CUST_51002_PI429285431	5.1317873	P	5.364374	P	0.851107517934386	0	lncRNA	54646-1_{1..750}	hg19_lincRNAsTranscripts_TCONS_l2_00006754 range=chr13:25163011-25171742 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006754 range=chr13:25163011-25171742 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 25163011	 25163760	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20729_PI429285431	5.3790803	P	5.3058763	P	1.05205053076202	0	lncRNA	22363-1_{1..623}	lnc-SAG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAG-1:1	chr2	234300716	234301338	+	lnc-SAG-1	lnc-SAG-1:1	ENSG00000243637.1	AC019221.4	DGKD	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80chr2:234290716-234311045"	NA	inner
CUST_47570_PI429285431	3.8862839	P	3.8588378	P	1.01920629969121	0	lncRNA	51575-1_{1..557}	"gi|394025718|ref|NR_073010.1| Homo sapiens uncharacterized LOC100873065 (LOC100873065), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|394025718|ref|NR_073010.1| Homo sapiens uncharacterized LOC100873065 (LOC100873065), non-coding RNA"	ChrX	 22277914	 22278470	-	100873065	NR_073010.1	NA	NA	NA	NA	NA	inter
CUST_12981_PI429285431	1.862646	A	1.6656365	A	1.1463197341023	0	lncRNA	14607-1_{1..1853}	lnc-TGFBRAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGFBRAP1-1:1	chr2	105952762	105954614	-	lnc-TGFBRAP1-1	lnc-TGFBRAP1-1:1	XLOC_002245	linc-TGFBRAP1	TGFBRAP1	"hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20chr2:105942762-105946148"	NA	inter
CUST_37251_PI429285431	1.6724191	A	2.1161702	A	0.735220500680026	0	lncRNA	38358-1_{1..1697}	n345682|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1231|NULL|-1.3514200|-0.2614590	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345682|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1231|NULL|-1.3514200|-0.2614590	chr5	  1569783	  1571479	+	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90"	NA	inter
CUST_1525_PI429285431	0.92135864	A	0.9294794	A	0.994386930574948	0	lncRNA	1512-1_{1..736}	"transcript_id ""ENST00000494897.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000494897.1"" | genecode_v17"	chr3	162917363	162918098	-	ENSG00000241369.1	ENST00000494897.1	CT64	CT64-007	NA	NA	NA	inter
CUST_39922_PI429285431	0.96727276	A	0.97087693	A	0.997504897681523	0	lncRNA	40800-1_{1..3000}	n406785|NR_024236|lncRNA|Homosapiens||RefGeneNoncode|NR_024236||1.0725300|-0.3453138	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n406785|NR_024236|lncRNA|Homosapiens||RefGeneNoncode|NR_024236||1.0725300|-0.3453138	chr1	221503269	221506268	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-29.51;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50"	NA	inter
LNCA_21_P0012858	1.4153156	A	1.107907	A	1.23748290889312	0	lncRNA	TCONS_l2_00022568	NA	NA	NA	NA	XLOC_l2_011803	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011803), lincRNA [TCONS_l2_00022568]"	chr5:147646579-147646638	hs|5q32	Agilent_HUMAN_G3V2	TCONS_l2_00022568	TCONS_l2_00022568	chr5	147646579	147646638	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29598_PI429285431	1.7508873	A	1.9576802	A	0.866461228659168	0	lncRNA	31359-1_{1..264}	n333111|AF329944|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077635|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077635|1.0974500|-0.0707740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333111|AF329944|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077635|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077635|1.0974500|-0.0707740	chr10	 17201152	 17201415	-	NA	NA	NA	NA	TRDMT1	NA	chr10:17191152-17226669	inner
CUST_28047_PI429285431	2.086454	A	1.6258669	A	1.37610170427088	0	lncRNA	29663-1_{1..486}	n325310|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324134|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324134|-1.0010300|-0.4765677	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325310|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324134|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324134|-1.0010300|-0.4765677	chr2	 51282722	 51283207	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10624_PI429285431	7.185316	P	7.2991295	P	0.924142030366958	0	lncRNA	12156-1_{1..3000}	lnc-ZADH2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZADH2-1:1	chr18	 72881639	 72884638	-	lnc-ZADH2-1	lnc-ZADH2-1:1	XLOC_012885	linc-FAM69C-1	NA	NA	NA	inter
LNCA_21_P0003282	1.3050324	A	0.92879415	A	1.29795309622135	0	lncRNA	TCONS_00007130	NA	NA	NA	NA	XLOC_003069	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003069), lincRNA [TCONS_00007130]"	chr3:25905340-25905281	hs|3p24.2	Agilent_HUMAN_G3V2	TCONS_00007130	TCONS_00007130	chr3	 25905281	 25905340	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40792_PI429285431	11.3872595	P	11.121049	P	1.20264471095818	0	lncRNA	41502-1_{1..1909}	n410550|NR_037717|lncRNA|Homosapiens||RefGeneNoncode|NR_037717||3.1030800|-0.1406345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410550|NR_037717|lncRNA|Homosapiens||RefGeneNoncode|NR_037717||3.1030800|-0.1406345	chr17	  6915735	  6917643	+	NA	NA	NA	NA	BCL6B	NA	chr17:6926369-6930843	inter
CUST_18831_PI429285431	4.616606	P	4.6138563	P	1.00190776427348	0	lncRNA	20525-1_{1..556}	lnc-HSCB-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HSCB-1:2	chr22	 28393399	 28393954	+	lnc-HSCB-1	lnc-HSCB-1:2	ENSG00000235954	TTC28-AS1	TTC28	NA	chr22:28383399-28403619	inner
CUST_35251_PI429285431	2.916979	A	3.548708	P	0.645402468102301	0	lncRNA	36652-1_{1..1360}	n342251|AK091566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4741|NULL|-0.9418570|-0.2523373	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342251|AK091566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4741|NULL|-0.9418570|-0.2523373	chr1	 33607471	 33608830	-	NA	NA	NA	NA	TRIM62	NA	chr1:33611003-33618831	inter
CUST_29585_PI429285431	9.845606	P	9.503047	P	1.2680037393507	0	lncRNA	31345-1_{1..260}	n333091|AF304301|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076724|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076724|0.0004210|-0.1081118	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333091|AF304301|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076724|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076724|0.0004210|-0.1081118	chr9	 90341035	 90341294	+	NA	NA	NA	NA	CTSL1	NA	chr9:90340974-90346384	inner
CUST_31712_PI429285431	5.245327	P	7.5755115	P	0.198858688138971	0	lncRNA	33455-1_{1..617}	n338241|AB048288|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|634|NULL|-0.4333160|-0.1483289	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338241|AB048288|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|634|NULL|-0.4333160|-0.1483289	chr1	152551504	152552120	-	NA	NA	NA	NA	LCE3D	NA	chr1:152551860-152552980	inner
CUST_20140_PI429285431	0.95036846	A	1.3381542	A	0.76430176124803	0	lncRNA	21785-1_{1..372}	lnc-ASB7-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASB7-3:2	chr15	100977983	100978354	+	lnc-ASB7-3	lnc-ASB7-3:2	ENSG00000259430.1	RP11-168G16.2	CERS3	NA	chr15:100967983-100988119	inner
CUST_7428_PI429285431	1.3595642	A	0.9048031	A	1.3705558319257	0	lncRNA	9070-1_{1..2578}	lnc-TCF24-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TCF24-2:6	chr8	 67835284	 67837861	-	lnc-TCF24-2	lnc-TCF24-2:6	ENSG00000245910	SNHG6	C8orf45	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20chr8:67825284-67834283"	NA	inter
CUST_31441_PI429285431	1.4092758	A	1.5641729	A	0.89819643432067	0	lncRNA	33210-1_{1..2003}	n337910|BC033162|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|293|NULL|-1.1776100|-0.1938965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337910|BC033162|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|293|NULL|-1.1776100|-0.1938965	chr15	 68126645	 68128647	-	NA	NA	NA	NA	SKOR1	NA	chr15:68117941-68126174	inter
CUST_21502_PI429285431	3.2922044	P	2.746364	A	1.45987050166361	0	lncRNA	23120-1_{1..964}	lnc-BHMT2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BHMT2-1:7	chr5	 77771327	 77772290	+	lnc-BHMT2-1	lnc-BHMT2-1:7	ENSG00000085365.12	SCAMP1	LHFPL2	NA	chr5:77781038-77781636	inner
CUST_25865_PI429285431	8.755778	P	8.425902	P	1.25690533855047	0	lncRNA	27386-1_{1..1789}	lnc-C20orf78-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C20orf78-5:1	chr20	 19264789	 19266577	-	lnc-C20orf78-5	lnc-C20orf78-5:1	ENSG00000179447.2	RP5-1027G4.3	SLC24A3	NA	chr20:19254789-19275240	inner
CUST_39242_PI429285431	1.4507612	A	1.5055001	A	0.962768669911017	0	lncRNA	40213-1_{1..1023}	n386097|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ayz.1||-0.8617970|-0.3580640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386097|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ayz.1||-0.8617970|-0.3580640	chr15	 28834637	 28835659	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9093_PI429285431	4.3123007	P	4.1657104	P	1.10695018547429	0	lncRNA	10614-1_{1..568}	lnc-TCP11L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TCP11L1-1:1	chr11	 33211479	 33212046	+	lnc-TCP11L1-1	lnc-TCP11L1-1:1	ENSG00000247151	RP11-348A11.4	HIPK3	NA	chr11:33211461-33221840	inter
CUST_38951_PI429285431	1.6297936	A	0.94469947	A	1.60780688094202	0	lncRNA	39937-2_{3001..3348}	n385123|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tdf.1||-0.2128610|-0.2892867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385123|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tdf.1||-0.2128610|-0.2892867	chr7	 32964114	 32964461	-	NA	NA	NA	NA	NA	"hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-34.07;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00"	NA	inter
CUST_18263_PI429285431	4.4086857	P	4.890614	P	0.716019954943489	0	lncRNA	19997-1_{1..2029}	lnc-MST1P9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MST1P9-2:1	chr1	 16971141	 16973169	-	lnc-MST1P9-2	lnc-MST1P9-2:1	ENSG00000215908	CROCCP2	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70"	NA	inter
CUST_17739_PI429285431	1.2106096	A	1.5680054	A	0.780572315045717	0	lncRNA	19469-1_{1..1296}	lnc-ACSL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ACSL1-2:1	chr4	185820461	185821756	-	lnc-ACSL1-2	lnc-ACSL1-2:1	XLOC_004209	linc-ACSL1-2	NA	NA	NA	inter
CUST_10887_PI429285431	5.101982	P	5.3825045	P	0.823292791808814	0	lncRNA	12428-1_{1..588}	lnc-ATAD5-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATAD5-3:4	chr17	 29069868	 29070455	+	lnc-ATAD5-3	lnc-ATAD5-3:4	XLOC_012162	linc-ATAD5-2	NA	NA	NA	inter
CUST_34462_PI429285431	0.92102104	A	0.9173536	A	1.00254530950991	0	lncRNA	35935-1_{1..344}	n341337|L08440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3806|NULL|-1.3736000|-0.2430295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341337|L08440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3806|NULL|-1.3736000|-0.2430295	chr7	138977473	138977816	-	NA	NA	NA	NA	UBN2	NA	chr7:138967473-138987807	inner
CUST_27845_PI429285431	0.9253643	A	1.731224	A	0.572021112120508	0	lncRNA	29437-1_{1..1857}	n325079|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077878|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077878|-0.7115130|-0.1875738	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325079|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077878|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077878|-0.7115130|-0.1875738	chr20	  5428968	  5430824	-	NA	NA	NA	NA	NA	"hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30"	NA	inter
CUST_50812_PI429285431	0.9010465	A	1.296259	A	0.760377369517891	0	lncRNA	54463-1_{1..1088}	hg19_lincRNAsTranscripts_TCONS_l2_00005005 range=chr11:50238913-50257672 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005005 range=chr11:50238913-50257672 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	 50238913	 50240000	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7444_PI429285431	6.762562	P	7.1840467	P	0.746655833617685	0	lncRNA	9088-1_{1..904}	lnc-PDZD7-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PDZD7-4:2	chr10	102890514	102891417	-	lnc-PDZD7-4	lnc-PDZD7-4:2	ENSG00000236311	RP11-108L7.11	TLX1	NA	chr10:102891061-102897546	inner
CUST_24952_PI429285431	2.012072	A	1.5428545	A	1.38435840551746	0	lncRNA	26491-1_{1..467}	lnc-MINA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MINA-1:1	chr3	 97866885	 97867351	-	lnc-MINA-1	lnc-MINA-1:1	ENSG00000249225.1	RP11-343D2.11	OR5H14	NA	chr3:97868230-97869162	inter
CUST_3576_PI429285431	0.9111432	A	0.9052141	A	1.00411819550615	0	lncRNA	3546-1_{1..777}	"transcript_id ""ENST00000438372.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438372.1"" | genecode_v17"	chr10	  2054459	  2055235	-	ENSG00000234962.1	ENST00000438372.1	LINC00700	LINC00700-001	NA	NA	NA	inter
CUST_8264_PI429285431	1.1638144	A	0.9200784	A	1.18405492080488	0	lncRNA	9852-1_{1..1295}	lnc-SLC30A7-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC30A7-2:5	chr1	101552408	101553702	+	lnc-SLC30A7-2	lnc-SLC30A7-2:5	ENSG00000233184	RP11-421L21.3	NA	NA	NA	inter
CUST_9607_PI429285431	7.1263623	P	7.5624175	P	0.73915293383005	0	lncRNA	11124-1_{1..520}	lnc-KATNAL2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KATNAL2-4:1	chr18	 45206391	 45206910	+	lnc-KATNAL2-4	lnc-KATNAL2-4:1	XLOC_012670	linc-KIAA0427-3	NA	NA	NA	inter
CUST_45948_PI429285431	7.8082232	P	6.488743	P	2.49576171807359	0	lncRNA	50246-4_{9001..9471}	"gi|242247131|ref|NR_027948.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant beta, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|242247131|ref|NR_027948.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant beta, non-coding RNA"	Chr12	  1109404	  1109874	+	23085	NR_027948.1	NA	NA	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10"	NA	inter
CUST_47333_PI429285431	7.278964	P	7.848593	P	0.673790036387224	0	lncRNA	51389-1_{1..3000}	"gi|211971077|ref|NR_024389.1| Homo sapiens uncharacterized LOC100192386 (FLJ16779), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|211971077|ref|NR_024389.1| Homo sapiens uncharacterized LOC100192386 (FLJ16779), non-coding RNA"	Chr20	 61885330	 61888329	+	100192386	NR_024389.1	NA	NA	NA	"hg19_refFlat_NKAIN4:range=chr20:61872849-618858025'pad=0,hg19_refFlat_NKAIN4:range=chr20:61872849-618858025'pad=0 3'pad=0 strand=- repeatMasking=none,-100.70"	NA	inter
CUST_5111_PI429285431	1.0150737	A	1.1922383	A	0.884439522078073	0	lncRNA	5051-1_{1..389}	"transcript_id ""ENST00000564898.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564898.1"" | genecode_v17"	chr15	 24820099	 24820487	+	ENSG00000259905.1	ENST00000564898.1	PWRN1	PWRN1-004	NA	NA	NA	inter
CUST_13948_PI429285431	0.9186245	A	0.9114198	A	1.00500640788107	0	lncRNA	15595-1_{1..452}	lnc-FAM103A1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM103A1-2:1	chr15	 83682983	 83683434	+	lnc-FAM103A1-2	lnc-FAM103A1-2:1	XLOC_011335	linc-TM6SF1	C15orf40	NA	chr15:83672983-83680393	inter
CUST_50965_PI429285431	0.92213714	A	0.9193281	A	1.00194897494362	0	lncRNA	54606-1_{1..854}	hg19_lincRNAsTranscripts_TCONS_l2_00005786 range=chr12:80615881-80633365 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005786 range=chr12:80615881-80633365 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 80615881	 80616734	+	NA	NA	NA	NA	OTOGL	NA	chr12:80605881-80643365	inner
CUST_43296_PI429285431	3.8368137	P	4.103045	P	0.831488779296973	0	lncRNA	48115-1_{1..877}	ENST00000601911 havana:sense_overlapping chromosome:GRCh37:19:39805291:39811498:-1 gene:ENSG00000268262 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000601911 havana:sense_overlapping chromosome:GRCh37:19:39805291:39811498:-1 gene:ENSG00000268262 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	chr19	 39805291	 39806167	-	ENSG00000268262	ENST00000601911	NA	NA	GMFG	NA	chr19:39818999-39821498	inner
CUST_32788_PI429285431	3.9163487	P	4.493155	P	0.670446305617658	0	lncRNA	34423-1_{1..1920}	n339430|AK124247|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1862|NULL|-1.0325300|-0.3010856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339430|AK124247|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1862|NULL|-1.0325300|-0.3010856	chr3	113005776	113007695	-	NA	NA	NA	NA	WDR52	NA	chr3:113005777-113017696	inner
CUST_19158_PI429285431	0.9779051	A	1.8144124	A	0.559997658499368	0	lncRNA	20830-1_{1..3000}	lnc-GPR125-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-GPR125-2:1	chr4	 21844963	 21847962	-	lnc-GPR125-2	lnc-GPR125-2:1	UM9-5	NCRNA00099	KCNIP4	NA	chr4:21834963-21864811	inner
CUST_41108_PI429285431	11.516707	P	12.49451	P	0.507752379285815	0	lncRNA	41855-1_{1..114}	ENST00000488948 ncrna:miRNA supercontig:GRCh37:GL000220.1:107448:107561:1 gene:ENSG00000244180 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000488948 ncrna:miRNA supercontig:GRCh37:GL000220.1:107448:107561:1 gene:ENSG00000244180 gene_biotype:miRNA transcript_biotype:miRNA	chrGL000220.1	   107448	   107561	+	ENSG00000244180	ENST00000488948	NA	NA	NA	NA	NA	Unknown
CUST_29356_PI429285431	7.684148	P	7.833284	P	0.901790364386262	0	lncRNA	31108-1_{1..1319}	n332614|AL122064|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000024853|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000024853|5.3877100|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332614|AL122064|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000024853|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000024853|5.3877100|-1.0000000	chr1	151104525	151105843	-	NA	NA	NA	NA	SEMA6C	NA	chr1:151104161-151115844	inner
CUST_49973_PI429285431	1.546138	A	1.6295824	A	0.943801650798563	0	lncRNA	53717-5_{12001..13472}	hg19_lincRNAsTranscripts_TCONS_l2_00026970 range=chr7:149714423-149745413 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026970 range=chr7:149714423-149745413 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	149726423	149727894	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001339	1.0478348	A	1.6498655	A	0.658825956152936	0	lncRNA	TCONS_00001027	NA	NA	NA	NA	XLOC_000294	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000294), lincRNA [TCONS_00001027]"	chr1:93805255-93805314	hs|1p22.1	Agilent_HUMAN_G3V2	TCONS_00001027	TCONS_00001027	chr1	 93805255	 93805314	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33086_PI429285431	5.0847588	P	5.079964	P	1.00332903105793	0	lncRNA	34690-1_{1..2127}	n339774|AK091102|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2221|NULL|-0.9285190|-0.3372670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339774|AK091102|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2221|NULL|-0.9285190|-0.3372670	chr18	  3604967	  3607093	+	NA	NA	NA	NA	DLGAP1	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20chr18:3594967-3618462"	NA	inner
CUST_18548_PI429285431	0.9242371	A	1.075911	A	0.900205384988897	0	lncRNA	20259-1_{1..544}	lnc-RP11-826N14.2.1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-826N14.2.1-2:5	chr5	175602151	175602694	-	lnc-RP11-826N14.2.1-2	lnc-RP11-826N14.2.1-2:5	ENSG00000248596	RP11-844P9.2	NA	NA	NA	inter
CUST_6582_PI429285431	0.91433996	A	0.94497406	A	0.978989912835042	0	lncRNA	6530-1_{1..359}	"transcript_id ""ENST00000601161.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601161.1"" | genecode_v17"	chr19	 54728395	 54728753	+	ENSG00000269524.1	ENST00000601161.1	CTB-83J4.1	CTB-83J4.1-001	LILRB3	NA	chr19:54720147-54726959	inter
CUST_11459_PI429285431	0.9408004	A	0.9703853	A	0.979702142223564	0	lncRNA	13025-2_{3001..6000}	lnc-CDH5-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH5-4:1	chr16	 65175004	 65178003	+	lnc-CDH5-4	lnc-CDH5-4:1	XLOC_011753	linc-CDH5-2	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
CUST_2025_PI429285431	0.91726846	A	1.0522436	A	0.910685526060919	0	lncRNA	2016-1_{1..339}	"transcript_id ""ENST00000504057.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504057.1"" | genecode_v17"	chr4	190209831	190210169	-	ENSG00000249877.1	ENST00000504057.1	RP11-706F1.2	RP11-706F1.2-001	NA	NA	NA	inter
LNCA_21_P0007457	0.9513863	A	0.92619973	A	1.01761128156257	0	lncRNA	TCONS_00020038	NA	NA	NA	NA	XLOC_009367	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009367), lincRNA [TCONS_00020038]"	chr11:8035151-8034306	hs|11p15.4	Agilent_HUMAN_G3V2	TCONS_00020038	TCONS_00020038	chr11	  8034306	  8035151	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1336_PI429285431	0.9507785	A	0.9623568	A	0.992006652073318	0	lncRNA	1325-1_{1..592}	"transcript_id ""ENST00000415991.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415991.1"" | genecode_v17"	chr3	 34200874	 34201465	+	ENSG00000226320.1	ENST00000415991.1	AC018359.1	AC018359.1-002	NA	NA	NA	inter
CUST_2458_PI429285431	0.90945596	A	1.0966725	A	0.878298630910432	0	lncRNA	2450-1_{1..2050}	"transcript_id ""ENST00000580119.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580119.1"" | genecode_v17"	chr6	   181466	   183515	-	ENSG00000263667.1	ENST00000580119.1	RP3-416J7.4	RP3-416J7.4-001	NA	NA	NA	inter
CUST_37024_PI429285431	1.0075997	A	0.95441085	A	1.03755574460048	0	lncRNA	38162-1_{1..1002}	n345479|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1028|NULL|-1.3558400|-0.4415248	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345479|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1028|NULL|-1.3558400|-0.4415248	chr1	193251770	193252771	-	NA	NA	NA	NA	NA	"hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40"	NA	inter
CUST_42387_PI429285431	11.973972	P	11.951026	P	1.01603211225309	0	lncRNA	45077-1_{1..146}	ENST00000384714 ncrna:snoRNA chromosome:GRCh37:11:75115465:75115610:1 gene:ENSG00000207445 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384714 ncrna:snoRNA chromosome:GRCh37:11:75115465:75115610:1 gene:ENSG00000207445 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 75115465	 75115610	+	ENSG00000207445	ENST00000384714	NA	NA	RPS3	NA	chr11:75110562-75116733	inner
CUST_34857_PI429285431	1.5928861	A	2.1474829	A	0.680847312788385	0	lncRNA	36283-1_{1..2437}	n341763|AK075254|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4238|NULL|-0.9944460|-0.2482464	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341763|AK075254|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4238|NULL|-0.9944460|-0.2482464	chr9	117374791	117377227	+	NA	NA	NA	NA	C9orf91	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-21.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90chr9:117373706-117387101"	NA	inner
CUST_39446_PI429285431	3.4686458	P	3.4129684	A	1.03934700155394	0	lncRNA	40391-1_{1..2020}	n386789|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010uao.1||13.6439000|-0.1853764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386789|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010uao.1||13.6439000|-0.1853764	chr15	 28900418	 28902437	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25711_PI429285431	0.93718594	A	1.1034365	A	0.891155711025939	0	lncRNA	27239-1_{1..349}	lnc-DNAJC11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DNAJC11-2:1	chr1	  7074312	  7074660	-	lnc-DNAJC11-2	lnc-DNAJC11-2:1	ENSG00000237365.1	RP11-334N17.1	CAMTA1	NA	chr1:7064312-7084339	inner
CUST_10404_PI429285431	5.675255	P	6.4796643	P	0.5725964773796	0	lncRNA	11931-1_{1..1731}	lnc-SLC39A11-1:19	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC39A11-1:19	chr17	 70418926	 70420656	-	lnc-SLC39A11-1	lnc-SLC39A11-1:19	XLOC_012568	linc-ABCA5-3	NA	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70"	NA	inter
CUST_18257_PI429285431	8.201839	P	7.9026294	P	1.23047009895181	0	lncRNA	19991-1_{1..632}	lnc-UBLCP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-UBLCP1-2:1	chr5	158759790	158760421	+	lnc-UBLCP1-2	lnc-UBLCP1-2:1	ENSG00000249738	AC008697.1	IL12B	NA	chr5:158749790-158757481	inter
CUST_37635_PI429285431	0.92873466	A	2.4987764	A	0.336798649829279	0	lncRNA	38730-1_{1..290}	n346114|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1664|NULL|-1.3867300|-0.2673293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346114|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1664|NULL|-1.3867300|-0.2673293	chr4	177815027	177815316	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33247_PI429285431	3.8098207	P	3.4120402	A	1.31747948750594	0	lncRNA	34834-1_{1..2305}	n339951|CR592477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2400|NULL|-0.7845180|-0.2524859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339951|CR592477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2400|NULL|-0.7845180|-0.2524859	chr10	  6019376	  6021680	+	NA	NA	NA	NA	IL15RA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.31;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_IL15RA:range=chr10:5995058-60195605'pad=0,hg19_refFlat_IL15RA:range=chr10:5995058-60195605'pad=0 3'pad=0 strand=- repeatMasking=none,-109.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_IL15RA:range=chr10:5995058-60194555'pad=0,hg19_refFlat_IL15RA:range=chr10:5995058-60194555'pad=0 3'pad=0 strand=- repeatMasking=none,-107.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-62.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60chr10:6009376-6020142"	NA	inner
CUST_8792_PI429285431	0.9239247	A	0.92161703	A	1.00160083492456	0	lncRNA	10332-1_{1..2563}	lnc-BRCA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BRCA2-1:1	chr13	 33002157	 33004719	+	lnc-BRCA2-1	lnc-BRCA2-1:1	ENSG00000245212	ENST00000499629	N4BP2L2	"hg19_refFlat_N4BP2L1:range=chr13:32977281-330022195'pad=0,hg19_refFlat_N4BP2L1:range=chr13:32977281-330022195'pad=0 3'pad=0 strand=- repeatMasking=none,-101.50;hg19_refFlat_N4BP2L1:range=chr13:32977079-330022195'pad=0,hg19_refFlat_N4BP2L1:range=chr13:32977079-330022195'pad=0 3'pad=0 strand=- repeatMasking=none,-101.50chr13:33006930-33012299"	NA	inner
LNCA_21_P0003584	3.5802314	P	3.3494806	P	1.17344546886639	0	lncRNA	TCONS_00008014	NA	NA	NA	NA	XLOC_003479	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003479), lincRNA [TCONS_00008014]"	chr4:26082073-26082132	hs|4p15.2	Agilent_HUMAN_G3V2	TCONS_00008014	TCONS_00008014	chr4	 26082073	 26082132	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15373_PI429285431	5.8494353	P	6.0697417	P	0.858383113417715	0	lncRNA	17056-1_{1..528}	lnc-CXorf28-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CXorf28-1:1	chrX	  3117701	  3118228	+	lnc-CXorf28-1	lnc-CXorf28-1:1	XLOC_007920	linc-STS-5	NA	NA	NA	inter
CUST_36398_PI429285431	0.9275634	A	1.10309	A	0.885444262943701	0	lncRNA	37616-1_{1..996}	n344915|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_464|NULL|-1.2792900|-0.3789626	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344915|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_464|NULL|-1.2792900|-0.3789626	chr6	 84676653	 84677648	-	NA	NA	NA	NA	CYB5R4	NA	chr6:84666653-84670146	inter
CUST_18375_PI429285431	7.4335623	P	7.823664	P	0.763075811029033	0	lncRNA	20103-1_{1..1858}	lnc-PRC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRC1-1:1	chr15	 91497565	 91499422	-	lnc-PRC1-1	lnc-PRC1-1:1	ENSG00000258384	AC068831.6	UNC45A	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UNC45A:range=chr15:91478555-914969465'pad=0,hg19_refFlat_UNC45A:range=chr15:91478555-914969465'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90chr15:91487565-91497323"	NA	inner
CUST_33918_PI429285431	2.3039706	A	2.6321907	A	0.796518568793089	0	lncRNA	35460-1_{1..3000}	n340713|AL833484|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3176|NULL|-0.9080490|-0.3083337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340713|AL833484|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3176|NULL|-0.9080490|-0.3083337	chr5	159203778	159206777	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2052_PI429285431	0.9129692	A	0.90448296	A	1.00589954751751	0	lncRNA	2044-1_{1..295}	"transcript_id ""ENST00000515656.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515656.1"" | genecode_v17"	chr5	  4831812	  4832106	-	ENSG00000248467.1	ENST00000515656.1	CTD-2161F6.1	CTD-2161F6.1-001	NA	NA	NA	inter
LNCA_33_P3734981	0.9909636	A	0.92477417	A	1.04694774019351	0	lncRNA	XR_108994	XR_108994	XR_108994	   401550	Hs.644347	C9orf148	chromosome 9 open reading frame 148	NA	THC2605046	NA	"PREDICTED: Homo sapiens chromosome 9 open reading frame 148 (C9orf148), miscRNA [XR_108994]"	chr9:124646983-124646924	hs|9q33.2	Agilent_HUMAN_G3V2	XR_108994	XR_108994	chr9	124646924	124646983	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5498_PI429285431	3.5538259	P	3.9365957	P	0.766963698704122	0	lncRNA	5430-1_{1..328}	"transcript_id ""ENST00000562241.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562241.1"" | genecode_v17"	chr16	 32897778	 32898105	+	ENSG00000214614.2	ENST00000562241.1	RP11-989E6.3	RP11-989E6.3-003	NA	NA	NA	inter
CUST_9984_PI429285431	0.92021763	A	0.97888243	A	0.960152319732789	0	lncRNA	11508-1_{1..745}	lnc-BRD3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BRD3-2:1	chr9	137111418	137112162	-	lnc-BRD3-2	lnc-BRD3-2:1	XLOC_007883	linc-BRD3-5	NA	NA	NA	inter
CUST_38962_PI429285431	2.6113148	A	1.2205048	A	2.62225865956226	0	lncRNA	39947-1_{1..3000}	n385150|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tnf.3||3.6168800|-0.2714561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385150|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tnf.3||3.6168800|-0.2714561	chr7	 45763389	 45766388	-	NA	NA	NA	NA	ADCY1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90chr7:45753389-45762715"	NA	inter
CUST_17716_PI429285431	0.9170956	A	0.9079895	A	1.0063318293535	0	lncRNA	19446-1_{1..444}	lnc-ZNF717-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF717-2:1	chr3	 75695572	 75696015	-	lnc-ZNF717-2	lnc-ZNF717-2:1	XLOC_003164	linc-CNTN3-1	FRG2C	NA	chr3:75702601-75705597	inter
CUST_19707_PI429285431	1.9025161	A	2.5624418	A	0.632910891585532	0	lncRNA	21364-1_{1..468}	lnc-FGFRL1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FGFRL1-4:1	chr4	  1126497	  1126964	+	lnc-FGFRL1-4	lnc-FGFRL1-4:1	ENSG00000251652.1	RP11-20I20.2	NA	NA	NA	inter
CUST_45432_PI429285431	7.019969	P	5.6921134	P	2.51029271365613	0	lncRNA	49850-1_{1..2669}	"gi|198041758|ref|NR_024122.1| Homo sapiens pre-B-cell leukemia homeobox 3 (PBX3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|198041758|ref|NR_024122.1| Homo sapiens pre-B-cell leukemia homeobox 3 (PBX3), transcript variant 3, non-coding RNA"	Chr9	128509617	128512285	+	5090	NR_024122.1	NA	NA	NA	NA	NA	inter
CUST_27378_PI429285431	1.1628858	A	1.8657768	A	0.614339903718429	0	lncRNA	28940-1_{1..381}	n324540|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000276168|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000276168|-1.1823100|-0.4055516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324540|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000276168|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000276168|-1.1823100|-0.4055516	chr6	 32793759	 32794139	+	NA	NA	NA	NA	TAP2	NA	chr6:32789610-32804582	inner
CUST_34703_PI429285431	1.3596525	A	0.90764105	A	1.36794616061229	0	lncRNA	36152-1_{1..3000}	n341608|BC042052|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4079|NULL|-1.1359600|-0.2536660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341608|BC042052|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4079|NULL|-1.1359600|-0.2536660	chr8	128698587	128701586	-	NA	NA	NA	NA	MYC	NA	chr8:128748315-128753680	inter
CUST_7780_PI429285431	2.9002185	A	2.5237129	A	1.29819364595981	0	lncRNA	9405-1_{1..720}	lnc-WRNIP1-2:22	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WRNIP1-2:22	chr6	  2352573	  2353292	+	lnc-WRNIP1-2	lnc-WRNIP1-2:22	ENSG00000250903	RP1-80B9.2	NA	NA	NA	inter
LNCA_21_P0000957	0.95649266	A	0.91758776	A	1.02733371705797	0	lncRNA	ENST00000455902	NA	NA	NA	NA	XLOC_000100	NA	ENST00000455902	NA	NA	"BROAD Institute lincRNA (XLOC_000100), lincRNA [TCONS_00000168]"	chr1:25535187-25535246	hs|1p36.11	Agilent_HUMAN_G3V2	ENST00000455902	ENST00000455902	chr1	 25535187	 25535246	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44179_PI429285431	1.1846219	A	0.9129936	A	1.20716953287022	0	lncRNA	48835-2_{3001..3133}	"gi|213385275|ref|NR_024460.1| Homo sapiens coiled-coil domain containing 66 (CCDC66), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|213385275|ref|NR_024460.1| Homo sapiens coiled-coil domain containing 66 (CCDC66), transcript variant 3, non-coding RNA"	Chr3	 56594184	 56594316	+	285331	NR_024460.1	NA	NA	NA	NA	NA	inter
CUST_35130_PI429285431	2.2459514	A	1.2367864	A	2.01274583013343	0	lncRNA	36532-2_{3001..4092}	n342098|AK125137|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4580|NULL|16.5288000|-0.1921372	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342098|AK125137|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4580|NULL|16.5288000|-0.1921372	chr6	106811682	106812773	+	NA	NA	NA	NA	AIM1	NA	chr6:106959730-106979074	inner
CUST_362_PI429285431	3.8299456	P	4.2528105	P	0.745941863192326	0	lncRNA	354-1_{1..490}	"transcript_id ""ENST00000422022.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422022.1"" | genecode_v17"	chr1	113392698	113393187	+	ENSG00000224167.1	ENST00000422022.1	RP3-522D1.1	RP3-522D1.1-001	NA	NA	NA	inter
CUST_37879_PI429285431	2.6903894	A	2.5866442	A	1.07455937397189	0	lncRNA	38970-1_{1..1407}	n346415|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1965|NULL|-1.3056600|-0.2699815	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346415|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1965|NULL|-1.3056600|-0.2699815	chr19	 19969355	 19970761	-	NA	NA	NA	NA	ZNF253	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80chr19:19959355-19982019"	NA	inter
CUST_41137_PI429285431	3.682977	P	4.2243323	P	0.687125105078687	0	lncRNA	41923-1_{1..89}	ENST00000582013 ncrna:miRNA chromosome:GRCh37:14:36278418:36278506:-1 gene:ENSG00000266264 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582013 ncrna:miRNA chromosome:GRCh37:14:36278418:36278506:-1 gene:ENSG00000266264 gene_biotype:miRNA transcript_biotype:miRNA	chr14	 36278418	 36278506	-	ENSG00000266264	ENST00000582013	NA	NA	RALGAPA1	NA	chr14:36268418-36278432	inner
CUST_8269_PI429285431	0.90374804	A	0.8969374	A	1.00473193633146	0	lncRNA	9854-3_{6001..6327}	lnc-TIMP3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMP3-2:1	chr22	 33222342	 33222668	+	lnc-TIMP3-2	lnc-TIMP3-2:1	ENSG00000251658	ENST00000514117	SYN3	"hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60chr22:33206342-33226563"	NA	inner
CUST_16232_PI429285431	0.9231445	A	0.9104695	A	1.00882434752547	0	lncRNA	17939-1_{1..238}	lnc-FZD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FZD1-1:1	chr7	 90919048	 90919285	+	lnc-FZD1-1	lnc-FZD1-1:1	XLOC_006166	linc-AKAP9-3	NA	NA	NA	inter
CUST_41162_PI429285431	1.017226	A	0.89622784	A	1.08748700388307	0	lncRNA	41976-1_{1..84}	ENST00000385054 ncrna:miRNA chromosome:GRCh37:12:58218392:58218475:-1 gene:ENSG00000207789 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385054 ncrna:miRNA chromosome:GRCh37:12:58218392:58218475:-1 gene:ENSG00000207789 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 58218392	 58218475	-	ENSG00000207789	ENST00000385054	NA	NA	AVIL	NA	chr12:58208392-58209852	inner
CUST_35869_PI429285431	1.8272669	A	2.060403	A	0.850783465079046	0	lncRNA	37262-1_{1..3000}	n344535|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_83|NULL|-1.3130900|-0.3270477	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344535|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_83|NULL|-1.3130900|-0.3270477	chr7	 22862506	 22865505	+	NA	NA	NA	NA	FAM126A	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr7:22921440-22932065"	NA	inter
CUST_52047_PI429285431	1.6690898	A	1.2089952	A	1.37563201774444	0	lncRNA	55580-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017233 range=chr21:40249172-40273965 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017233 range=chr21:40249172-40273965 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 40249172	 40252171	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39342_PI429285431	0.95274794	A	1.0733483	A	0.919804805386054	0	lncRNA	40309-1_{1..1239}	n386413|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010jwm.1||1.0166700|-0.1735819	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386413|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010jwm.1||1.0166700|-0.1735819	chr6	 36698468	 36699706	+	NA	NA	NA	NA	CPNE5	NA	chr6:36704887-36710960	inner
CUST_10470_PI429285431	2.4607086	A	2.4226332	A	1.02674320530328	0	lncRNA	11996-1_{1..1112}	lnc-OXCT1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OXCT1-1:7	chr5	 42175255	 42176366	-	lnc-OXCT1-1	lnc-OXCT1-1:7	XLOC_004800	linc-OXCT1-1	NA	NA	NA	inter
CUST_45267_PI429285431	0.9279694	A	1.368566	A	0.736829843204997	0	lncRNA	49718-1_{1..648}	"gi|310120265|ref|XR_108888.1| PREDICTED: Homo sapiens uncharacterized LOC100507101 (LOC100507101), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120265|ref|XR_108888.1| PREDICTED: Homo sapiens uncharacterized LOC100507101 (LOC100507101), misc_RNA"	Chr8	128943921	128944568	+	100507101	XR_108888.2	NA	NA	NA	NA	NA	inter
CUST_39418_PI429285431	11.181011	P	10.55205	P	1.54645086954124	0	lncRNA	40378-1_{1..631}	n386707|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010siz.1||1.2174400|-0.2720496	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386707|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010siz.1||1.2174400|-0.2720496	chr12	 25070635	 25071265	-	NA	NA	NA	NA	BCAT1	NA	chr12:25060635-25081266	inner
LNCA_21_P0011037	0.9263704	A	2.32475	A	0.379354984731775	0	lncRNA	THC2553586	NA	NA	NA	NA	XLOC_l2_002886	NA	NA	THC2553586	NA	"BROAD Institute lincRNA (XLOC_l2_002886), lincRNA [TCONS_l2_00005503]"	chr12:009806383-009806442	hs|12p13.31	Agilent_HUMAN_G3V2	THC2553586	THC2553586	chr12	  9806383	  9806442	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50346_PI429285431	1.7821971	A	1.6501902	A	1.09581700741619	0	lncRNA	54060-1_{1..206}	hg19_lincRNAsTranscripts_TCONS_l2_00029620 range=chr9:136100253-136100660 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029620 range=chr9:136100253-136100660 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	136100253	136100458	-	NA	NA	NA	NA	ABO	NA	chr9:136100292-136110660	inter
CUST_34437_PI429285431	3.4553742	P	3.8776453	P	0.74624894918998	0	lncRNA	35917-1_{1..3000}	n341314|BX537723|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3783|NULL|-0.3407350|-0.2933324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341314|BX537723|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3783|NULL|-0.3407350|-0.2933324	chr7	126999843	127002842	-	NA	NA	NA	NA	ZNF800	NA	chr7:127010353-127014813	inter
CUST_51227_PI429285431	3.745007	P	3.8435762	P	0.933958790665283	0	lncRNA	54845-1_{1..1625}	hg19_lincRNAsTranscripts_TCONS_l2_00008412 range=chr15:22550808-22585673 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008412 range=chr15:22550808-22585673 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 22550808	 22552432	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7547_PI429285431	0.9119254	A	0.9169938	A	0.996493016711249	0	lncRNA	9183-1_{1..2499}	lnc-JMJD7-PLA2G4B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JMJD7-PLA2G4B-4:1	chr15	 42289337	 42291835	+	lnc-JMJD7-PLA2G4B-4	lnc-JMJD7-PLA2G4B-4:1	ENSG00000246740	CTD-2382E5.1	PLA2G4E	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_PLA2G4E:range=chr15:42275952-423429015'pad=0,hg19_refFlat_PLA2G4E:range=chr15:42275952-423429015'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.34;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50chr15:42279337-42301292"	NA	inner
CUST_42949_PI429285431	7.0658956	P	6.836126	P	1.17264766114363	0	lncRNA	46070-1_{1..122}	ENST00000391288 ncrna:snoRNA chromosome:GRCh37:7:152306398:152306519:1 gene:ENSG00000212590 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391288 ncrna:snoRNA chromosome:GRCh37:7:152306398:152306519:1 gene:ENSG00000212590 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	152306398	152306519	+	ENSG00000212590	ENST00000391288	NA	NA	NA	NA	NA	inter
CUST_27610_PI429285431	5.668036	P	5.641332	P	1.01868217055873	0	lncRNA	29186-4_{9001..9124}	n324811|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141032|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141032|1.5746900|-0.2886780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324811|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141032|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141032|1.5746900|-0.2886780	chr21	 34234333	 34234456	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80"	NA	inter
CUST_4494_PI429285431	0.9097142	A	0.9034806	A	1.00433015038979	0	lncRNA	4443-1_{1..563}	"transcript_id ""ENST00000546062.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546062.1"" | genecode_v17"	chr12	127515073	127515635	-	ENSG00000249345.2	ENST00000546062.1	RP11-575F12.1	RP11-575F12.1-003	NA	NA	NA	inter
CUST_48944_PI429285431	6.0569286	P	6.409091	P	0.783408995905282	0	lncRNA	52786-1_{1..522}	hg19_lincRNAsTranscripts_TCONS_l2_00019610 range=chr3:162937672-162996391 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019610 range=chr3:162937672-162996391 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	162937672	162938193	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51212_PI429285431	4.268137	P	3.666082	P	1.51787711804451	0	lncRNA	54830-1_{1..893}	hg19_lincRNAsTranscripts_TCONS_l2_00008392 range=chr15:20353045-20359916 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008392 range=chr15:20353045-20359916 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 20353045	 20353937	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21260_PI429285431	1.1336808	A	0.9180801	A	1.16118730137599	0	lncRNA	22885-1_{1..692}	lnc-NRAP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NRAP-1:1	chr10	115478972	115479663	-	lnc-NRAP-1	lnc-NRAP-1:1	ENSG00000234393.1	RP11-211N11.5	CASP7	NA	chr10:115468972-115489091	inner
CUST_5174_PI429285431	5.1595097	P	5.594234	P	0.739835124109675	0	lncRNA	5115-1_{1..325}	"transcript_id ""ENST00000558370.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558370.1"" | genecode_v17"	chr15	 48236241	 48236565	+	ENSG00000259730.1	ENST00000558370.1	CTD-2007H18.1	CTD-2007H18.1-001	NA	NA	NA	inter
LNCA_21_P0014944	7.070371	P	7.251891	P	0.881773484534273	0	lncRNA	XR_133524	XR_133524	XR_133524	NA	NA	LOC100653206	uncharacterized LOC100653206	NA	THC2550705	NA	"PREDICTED: Homo sapiens hypothetical LOC100653206 (LOC100653206), miscRNA [XR_133524]"	chr9:90681467-90681408	hs|9q22.1	Agilent_HUMAN_G3V2	XR_133524	XR_133524	chr9	 90681408	 90681467	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38322_PI429285431	3.4241388	P	3.5182998	P	0.936816895368387	0	lncRNA	39368-1_{1..1398}	n382034|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vdx.2||0.6490410|-0.3603408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382034|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vdx.2||0.6490410|-0.3603408	chr13	 50618045	 50619442	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22131_PI429285431	0.9172572	A	0.9205918	A	0.997691300567217	0	lncRNA	23733-1_{1..408}	lnc-SERPINB6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SERPINB6-1:1	chr6	  2999247	  2999654	-	lnc-SERPINB6-1	lnc-SERPINB6-1:1	ENSG00000224846.1	RP1-90J20.8	NQO2	NA	chr6:3000067-3009368	inter
CUST_5327_PI429285431	0.90860456	A	0.90295374	A	1.00392453083263	0	lncRNA	5266-1_{1..458}	"transcript_id ""ENST00000556030.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556030.1"" | genecode_v17"	chr15	 94408736	 94409193	+	ENSG00000258476.1	ENST00000556030.1	RP11-76E17.3	RP11-76E17.3-003	NA	NA	NA	inter
CUST_5895_PI429285431	0.9102288	M	0.91188717	A	0.998851165925894	0	lncRNA	5826-1_{1..789}	"transcript_id ""ENST00000512717.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512717.1"" | genecode_v17"	chr17	 49021475	 49022263	+	ENSG00000251665.1	ENST00000512717.1	RP11-700H6.2	RP11-700H6.2-001	NA	NA	NA	inter
CUST_46746_PI429285431	1.4786671	A	1.5901204	A	0.925655132639668	0	lncRNA	50896-3_{6001..6919}	"gi|379991134|ref|NR_046431.1| Homo sapiens CTS telomere maintenance complex component 1 (CTC1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">gi|379991134|ref|NR_046431.1| Homo sapiens CTS telomere maintenance complex component 1 (CTC1), transcript variant 2, non-coding RNA"	Chr17	  8134139	  8135057	-	80169	NR_046431.1	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80"	NA	inter
LNCA_21_P0002611	5.5906506	P	6.0927534	P	0.706076888516809	0	lncRNA	TCONS_00004889	NA	NA	NA	NA	XLOC_001676	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001676), lincRNA [TCONS_00004889]"	chr2:132302832-132302891	hs|2q21.1	Agilent_HUMAN_G3V2	TCONS_00004889	TCONS_00004889	chr2	132302832	132302891	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38994_PI429285431	4.084558	P	3.9345746	P	1.10955670516511	0	lncRNA	39975-1_{1..983}	n385267|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vlb.1||4.6907700|-0.1839667	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385267|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vlb.1||4.6907700|-0.1839667	chr7	123454192	123455174	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12842_PI429285431	6.7121077	P	7.0885944	P	0.770311196391792	0	lncRNA	14470-1_{1..3000}	lnc-ARFGEF2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ARFGEF2-2:2	chr20	 47100198	 47103197	+	lnc-ARFGEF2-2	lnc-ARFGEF2-2:2	XLOC_013552	linc-ARFGEF2-3	NA	NA	NA	inter
CUST_43880_PI429285431	3.830349	P	3.198101	P	1.54997828106161	0	lncRNA	48599-1_{1..2953}	"gi|301898761|ref|NR_036454.1| Homo sapiens charged multivesicular body protein 3 (CHMP3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301898761|ref|NR_036454.1| Homo sapiens charged multivesicular body protein 3 (CHMP3), transcript variant 4, non-coding RNA"	Chr2	 86730553	 86733505	-	51652	NR_036454.1	NA	NA	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10"	NA	inter
LNCA_21_P0004823	0.92772675	A	0.92190117	A	1.00404614799546	0	lncRNA	TCONS_00011650	NA	NA	NA	NA	XLOC_005133	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005133), lincRNA [TCONS_00011650]"	chr6:3257580-3257639	hs|6p25.2	Agilent_HUMAN_G3V2	TCONS_00011650	TCONS_00011650	chr6	  3257580	  3257639	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27900_PI429285431	0.9179742	A	0.9053183	A	1.00881099167622	0	lncRNA	29495-1_{1..562}	n325138|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332207|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332207|-0.8297700|-0.4048561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325138|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332207|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332207|-0.8297700|-0.4048561	chr2	132303843	132304404	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-33.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60"	NA	inter
CUST_32727_PI429285431	7.468975	P	7.964926	P	0.709094101253015	0	lncRNA	34368-1_{1..1793}	n339356|AK097846|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1788|NULL|-0.9226470|-0.1007984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339356|AK097846|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1788|NULL|-0.9226470|-0.1007984	chr3	 49760257	 49762049	+	NA	NA	NA	NA	IP6K1	"hg19_refFlat_GMPPB:range=chr3:49759185-497611595'pad=0,hg19_refFlat_GMPPB:range=chr3:49759185-497611595'pad=0 3'pad=0 strand=- repeatMasking=none,-99.00chr3:49761728-49772050"	NA	inner
LNCA_21_P0014723	7.3155046	P	8.564575	P	0.420719210570217	0	lncRNA	XR_112768	XR_112768	XR_112768	NA	NA	LOC100292082	uncharacterized LOC100292082	NA	THC2618554	NA	"PREDICTED: Homo sapiens hypothetical LOC100292082 (LOC100292082), miscRNA [XR_112768]"	chr5:122422970-122422911	hs|5q23.2	Agilent_HUMAN_G3V2	XR_112768	XR_112768	chr5	122422911	122422970	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13425_PI429285431	1.5081074	A	1.059588	A	1.36463904468107	0	lncRNA	15063-1_{1..425}	lnc-ZNF8-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF8-3:1	chr19	 58785732	 58786156	+	lnc-ZNF8-3	lnc-ZNF8-3:1	XLOC_013181	linc-ZNF8-2	ZNF8	NA	chr19:58790318-58795962	inter
LNCA_21_P0014708	0.93038946	A	1.4755526	A	0.685313902790703	0	lncRNA	ENST00000505245	XR_112317	XR_112317	NA	Hs.437691	ATP6V1E2	"ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2"	ENST00000505245	THC2504718	GO:0008286|GO:0006879|GO:0033572|GO:0008553|GO:0001669|GO:0046961|GO:0015991|GO:0055085|GO:0033178|GO:0015992|GO:0006811|GO:0005829	"PREDICTED: Homo sapiens hypothetical LOC440862 (FLJ41757), miscRNA [XR_112317]"	chr2:46761864-46761805	hs|2p21	Agilent_HUMAN_G3V2	ENST00000505245	ENST00000505245	chr2	 46761805	 46761864	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50638_PI429285431	1.5487196	A	1.0591362	A	1.40403937960074	0	lncRNA	54319-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00003441 range=chr10:27225454-27235683 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003441 range=chr10:27225454-27235683 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 27228454	 27231453	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_14068_PI429285431	10.296487	P	11.158628	P	0.550135535245347	0	lncRNA	15714-1_{1..861}	lnc-TNFAIP6-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TNFAIP6-2:4	chr2	151491749	151492609	+	lnc-TNFAIP6-2	lnc-TNFAIP6-2:4	XLOC_001707	linc-TNFAIP6-2	NA	NA	NA	inter
CUST_26461_PI429285431	5.514697	P	6.082693	P	0.674553137425678	0	lncRNA	27969-1_{1..777}	lnc-NUMB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUMB-2:1	chr14	 73740647	 73741423	-	lnc-NUMB-2	lnc-NUMB-2:1	ENSG00000258944.1	RP4-647C14.3	NUMB	"hg19_refFlat_PAPLN:range=chr14:73706487-737393725'pad=0,hg19_refFlat_PAPLN:range=chr14:73706487-737393725'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.20chr14:73741918-73750789"	NA	inner
CUST_31025_PI429285431	0.9498387	A	0.92800784	A	1.01524706742814	0	lncRNA	32814-1_{1..526}	n337236|BC122522|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000388417|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000388417|3.3059600|-0.0883305	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337236|BC122522|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000388417|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000388417|3.3059600|-0.0883305	chr11	 66468461	 66468986	-	NA	NA	NA	NA	SPTBN2	NA	chr11:66458461-66482166	inner
CUST_3580_PI429285431	1.323102	A	1.3925933	A	0.952973961212229	0	lncRNA	3550-1_{1..587}	"transcript_id ""ENST00000418524.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418524.2"" | genecode_v17"	chr10	  2211334	  2211920	-	ENSG00000231326.2	ENST00000418524.2	RP11-69C17.4	RP11-69C17.4-001	NA	NA	NA	inter
CUST_13255_PI429285431	2.6498513	A	3.1020734	A	0.730916192460409	0	lncRNA	14885-1_{1..296}	lnc-HIST1H2AI-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HIST1H2AI-3:2	chr6	 27670093	 27670388	+	lnc-HIST1H2AI-3	lnc-HIST1H2AI-3:2	XLOC_005219	linc-HIST1H2AI-3	NA	NA	NA	inter
CUST_9610_PI429285431	7.4984627	P	7.5895	P	0.938847473673084	0	lncRNA	11126-2_{3001..3166}	lnc-RNASEH1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RNASEH1-4:1	chr2	  4024135	  4024300	-	lnc-RNASEH1-4	lnc-RNASEH1-4:1	XLOC_001954	linc-RNASEH1-7	NA	NA	NA	inter
LNCA_21_P0010356	0.96790683	A	1.8772085	A	0.532442755365158	0	lncRNA	ENST00000434741	NA	NA	NA	NA	XLOC_014216	NA	ENST00000434741	THC2741134	NA	"BROAD Institute lincRNA (XLOC_014216), lincRNA [TCONS_00029417]"	chr22:33562294-33562353	hs|22q12.3	Agilent_HUMAN_G3V2	ENST00000434741	ENST00000434741	chr22	 33562294	 33562353	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18773_PI429285431	2.478983	A	2.765433	A	0.819917125847166	0	lncRNA	20469-1_{1..466}	lnc-B3GNT7-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-B3GNT7-1:3	chr2	232259366	232259831	+	lnc-B3GNT7-1	lnc-B3GNT7-1:3	ENSG00000224376	AC017104.6	B3GNT7	NA	chr2:232260335-232265875	inter
CUST_4551_PI429285431	0.9828565	A	0.962214	A	1.01441114423312	0	lncRNA	4499-1_{1..400}	"transcript_id ""ENST00000437057.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437057.1"" | genecode_v17"	chr13	 19836937	 19837336	-	ENSG00000232243.1	ENST00000437057.1	RP11-408E5.5	RP11-408E5.5-001	NA	NA	NA	inter
CUST_17207_PI429285431	1.3292189	A	1.1594554	A	1.12487406974565	0	lncRNA	18921-1_{1..479}	lnc-HOXC13-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOXC13-2:1	chr12	 54124825	 54125303	+	lnc-HOXC13-2	lnc-HOXC13-2:1	XLOC_009763	linc-HOXC13-2	CALCOCO1	NA	chr12:54114825-54121307	inter
CUST_17692_PI429285431	1.5648006	A	0.90405405	A	1.58090047913483	0	lncRNA	19421-1_{1..814}	lnc-BOD1-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BOD1-2:8	chr5	173217639	173218452	-	lnc-BOD1-2	lnc-BOD1-2:8	XLOC_005088	linc-BOD1-2	NA	NA	NA	inter
CUST_36408_PI429285431	0.9224394	A	0.9178078	A	1.00321553927198	0	lncRNA	37626-1_{1..1780}	n344925|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_474|NULL|-1.3761600|-0.4329011	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344925|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_474|NULL|-1.3761600|-0.4329011	chr6	126420060	126421839	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6681_PI429285431	6.5916953	P	6.544207	P	1.03346411865513	0	lncRNA	6629-1_{1..610}	"transcript_id ""ENST00000432859.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432859.1"" | genecode_v17"	chr20	 32570858	 32571467	-	ENSG00000228265.1	ENST00000432859.1	RP5-1125A11.1	RP5-1125A11.1-003	RALY	NA	chr20:32581732-32590930	inter
CUST_48079_PI429285431	5.9062448	P	6.0701385	P	0.892612738135947	0	lncRNA	51955-1_{1..1872}	"gi|341914571|ref|XR_133387.1| PREDICTED: Homo sapiens double homeobox 4 like 9 (DUX4L9), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341914571|ref|XR_133387.1| PREDICTED: Homo sapiens double homeobox 4 like 9 (DUX4L9), misc_RNA"	NA	NA	NA	NA	NA	XR_133387.1	NA	NA	NA	NA	NA	Unknown
CUST_48596_PI429285431	0.92795175	A	1.5559314	A	0.647081954620763	0	lncRNA	52442-2_{3001..4453}	hg19_lincRNAsTranscripts_TCONS_l2_00013564 range=chr2:34902480-34950808 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013564 range=chr2:34902480-34950808 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 34905480	 34906932	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
CUST_28092_PI429285431	1.1239047	A	1.7063706	A	0.667821339966937	0	lncRNA	29713-1_{1..419}	n325363|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325375|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325375|-1.3612100|-0.2233872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325363|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325375|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325375|-1.3612100|-0.2233872	chr2	 25445545	 25445963	-	NA	NA	NA	NA	DNMT3A	NA	chr2:25455845-25462218	inter
CUST_9368_PI429285431	1.1760305	A	0.9161382	A	1.19738931383357	0	lncRNA	10869-1_{1..446}	lnc-C6orf105-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C6orf105-1:1	chr6	 11868339	 11868784	-	lnc-C6orf105-1	lnc-C6orf105-1:1	XLOC_005607	linc-C6orf105-3	NA	NA	NA	inter
CUST_21803_PI429285431	2.8513803	A	3.1318295	A	0.82333462247504	0	lncRNA	23413-1_{1..382}	lnc-NCKAP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NCKAP1-1:2	chr2	183972220	183972601	-	lnc-NCKAP1-1	lnc-NCKAP1-1:2	ENSG00000224643.1	AC064871.3	DUSP19	"hg19_refFlat_DUSP19:range=chr2:183943662-1839603865'pad=0,hg19_refFlat_DUSP19:range=chr2:183943662-1839603865'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90chr2:183962220-183964736"	NA	inter
CUST_33574_PI429285431	2.6431527	A	1.8411533	A	1.74351575396616	0	lncRNA	35139-1_{1..256}	n340326|AF056451|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2787|NULL|-1.0637700|-0.3558787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340326|AF056451|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2787|NULL|-1.0637700|-0.3558787	chr5	  8980515	  8980770	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008950	3.0944133	P	3.8599684	P	0.588226995313766	0	lncRNA	TCONS_00024424	NA	NA	NA	NA	XLOC_011740	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011740), lincRNA [TCONS_00024424]"	chr16:58476828-58476887	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024424	TCONS_00024424	chr16	 58476828	 58476887	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4675_PI429285431	0.90977013	A	0.93070686	A	0.985592559569323	0	lncRNA	4621-1_{1..353}	"transcript_id ""ENST00000442478.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442478.1"" | genecode_v17"	chr13	 91739508	 91739860	-	ENSG00000234625.1	ENST00000442478.1	RP11-51B13.1	RP11-51B13.1-001	NA	NA	NA	inter
CUST_18197_PI429285431	1.1406959	A	1.0875746	A	1.0375071652072	0	lncRNA	19932-1_{1..428}	lnc-LRP5L-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRP5L-1:3	chr22	 25677998	 25678425	-	lnc-LRP5L-1	lnc-LRP5L-1:3	ENSG00000233577	RP3-462D8.2	NA	NA	NA	inter
CUST_44984_PI429285431	3.7545426	P	5.327974	P	0.336008259083799	0	lncRNA	49494-1_{1..3000}	"gi|310120006|ref|XR_108833.1| PREDICTED: Homo sapiens uncharacterized LOC100505669 (LOC100505669), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310120006|ref|XR_108833.1| PREDICTED: Homo sapiens uncharacterized LOC100505669 (LOC100505669), misc_RNA"	NA	NA	NA	NA	NA	XR_108833.1	NA	NA	NA	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70"	NA	Unknown
CUST_22577_PI429285431	0.93089855	A	0.9208462	A	1.00699208936542	0	lncRNA	24164-1_{1..326}	lnc-TYMS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TYMS-2:1	chr18	   707597	   707922	+	lnc-TYMS-2	lnc-TYMS-2:1	ENSG00000265490.1	RP11-806L2.6	ENOSF1	"hg19_refFlat_ENOSF1:range=chr18:674305-7125065'pad=0,hg19_refFlat_ENOSF1:range=chr18:674305-7125065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ENOSF1:range=chr18:674305-7125875'pad=0,hg19_refFlat_ENOSF1:range=chr18:674305-7125875'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr18:697597-712662"	NA	inner
CUST_24998_PI429285431	1.1653029	A	1.0179088	A	1.10756709649663	0	lncRNA	26539-1_{1..456}	lnc-SSR3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-SSR3-1:1	chr3	156164574	156165029	-	lnc-SSR3-1	lnc-SSR3-1:1	ENSG00000242370.1	KCNAB1-AS1	KCNAB1	NA	chr3:156154574-156174694	inner
CUST_51861_PI429285431	9.8363495	P	9.938372	P	0.931725898169926	0	lncRNA	55413-1_{1..533}	hg19_lincRNAsTranscripts_TCONS_l2_00012635 range=chr19:51689126-51690588 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012635 range=chr19:51689126-51690588 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 51689126	 51689658	+	NA	NA	NA	NA	CD33	NA	chr19:51688070-51700588	inter
CUST_29417_PI429285431	0.9271358	A	1.0474828	A	0.919966351799529	0	lncRNA	31172-1_{1..485}	n332785|AF043342|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063739_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063739_08|-0.3851010|-0.2856449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332785|AF043342|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063739_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063739_08|-0.3851010|-0.2856449	chr6	  2887423	  2887907	+	NA	NA	NA	NA	SERPINB9	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20chr6:2887504-2898210"	NA	inner
CUST_566_PI429285431	1.1102544	A	0.9267224	A	1.13566080474729	0	lncRNA	558-1_{1..440}	"transcript_id ""ENST00000417161.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417161.1"" | genecode_v17"	chr1	213665644	213666083	+	ENSG00000225233.1	ENST00000417161.1	RP11-554K11.2	RP11-554K11.2-001	NA	NA	NA	inter
CUST_51180_PI429285431	16.97162	P	16.924597	P	1.0331308581229	0	lncRNA	54801-1_{1..678}	hg19_lincRNAsTranscripts_TCONS_l2_00008237 range=chr14:99439132-99470956 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008237 range=chr14:99439132-99470956 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr14	 99439132	 99439809	-	NA	NA	NA	NA	NA	"hg19_refFlat_RPL3:range=chr22:39708945-397156025'pad=0,hg19_refFlat_RPL3:range=chr22:39708945-397156025'pad=0 3'pad=0 strand=- repeatMasking=none,-97.80"	NA	inter
LNCA_21_P0014650	1.0382882	A	1.2668822	A	0.853466244874564	0	lncRNA	XR_110899	XR_110899	XR_110899	NA	Hs.585502	LOC100506282	uncharacterized LOC100506282	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506282 (LOC100506282), miscRNA [XR_110899]"	chr11:82902964-82902905	hs|11q14.1	Agilent_HUMAN_G3V2	XR_110899	XR_110899	chr11	 82902905	 82902964	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14008_PI429285431	1.0158292	A	0.9932095	A	1.01580233826774	0	lncRNA	15654-1_{1..1795}	lnc-BMP7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BMP7-2:1	chr20	 55869286	 55871080	-	lnc-BMP7-2	lnc-BMP7-2:1	XLOC_013812	linc-BMP7	NA	NA	NA	inter
CUST_13988_PI429285431	0.9259959	A	0.94475675	A	0.98708015680048	0	lncRNA	15633-1_{1..702}	lnc-PDGFD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDGFD-1:1	chr11	103718672	103719373	-	lnc-PDGFD-1	lnc-PDGFD-1:1	XLOC_009537	linc-DCUN1D5-3	NA	NA	NA	inter
CUST_32590_PI429285431	0.9420951	A	0.9796348	A	0.974315079685916	0	lncRNA	34251-2_{3001..5234}	n339209|AL161979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1641|NULL|-1.0798900|-0.2505040	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339209|AL161979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1641|NULL|-1.0798900|-0.2505040	chr16	 50703121	 50705354	+	NA	NA	NA	NA	SNX20	"hg19_refFlat_SNX20:range=chr16:50702952-507114375'pad=0,hg19_refFlat_SNX20:range=chr16:50702952-507114375'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30chr16:50700211-50715264"	NA	inner
CUST_4784_PI429285431	0.9181222	A	0.93387234	A	0.989142210843976	0	lncRNA	4728-1_{1..495}	"transcript_id ""ENST00000557197.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557197.1"" | genecode_v17"	chr14	 39944139	 39944633	+	ENSG00000258526.1	ENST00000557197.1	RP11-111A21.1	RP11-111A21.1-003	NA	NA	NA	inter
CUST_43344_PI429285431	1.2918719	A	0.9308274	A	1.28435542438514	0	lncRNA	48168-2_{3001..6000}	"gi|383276539|ref|NR_047519.1| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|383276539|ref|NR_047519.1| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 1, non-coding RNA"	Chr1	   765971	   768970	+	643837	NR_047519.1	NA	NA	NA	NA	NA	inter
CUST_40296_PI429285431	0.92635435	A	0.98246366	A	0.961854574185008	0	lncRNA	41100-1_{1..769}	n408277|NR_028474|lncRNA|Homosapiens||RefGeneNoncode|NR_028474||-0.1565180|-0.3094253	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408277|NR_028474|lncRNA|Homosapiens||RefGeneNoncode|NR_028474||-0.1565180|-0.3094253	chr5	 65240632	 65241400	-	NA	NA	NA	NA	ERBB2IP	NA	chr5:65230632-65251401	inner
CUST_14453_PI429285431	0.94506735	A	0.91743976	A	1.01933452317676	0	lncRNA	16116-1_{1..1878}	lnc-AC131097.4.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC131097.4.1-1:2	chr2	242842509	242844386	-	lnc-AC131097.4.1-1	lnc-AC131097.4.1-1:2	XLOC_002558	linc-PDCD1-1	NA	NA	NA	inter
CUST_27530_PI429285431	2.75604	A	2.3560967	A	1.31945605322418	0	lncRNA	29106-1_{1..673}	n324715|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320110|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320110|-0.9819040|-0.1299843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324715|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320110|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320110|-0.9819040|-0.1299843	chr22	 19996028	 19996700	-	NA	NA	NA	NA	C22orf25	NA	chr22:20008631-20019331	inner
CUST_11238_PI429285431	0.914513	A	0.9076184	A	1.00479041005299	0	lncRNA	12796-1_{1..361}	lnc-NRN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NRN1-1:1	chr6	  5876001	  5876361	-	lnc-NRN1-1	lnc-NRN1-1:1	XLOC_005593	linc-LYRM4	NA	NA	NA	inter
CUST_22887_PI429285431	0.93772125	A	1.114852	A	0.884460273954387	0	lncRNA	24464-1_{1..1546}	lnc-CDK1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK1-3:1	chr10	 61819092	 61820637	+	lnc-CDK1-3	lnc-CDK1-3:1	ENSG00000232682.1	RP11-388P9.2	ANK3	"hg19_refFlat_ANK3:range=chr10:61802449-621492965'pad=0,hg19_refFlat_ANK3:range=chr10:61802449-621492965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ANK3:range=chr10:61802449-623322855'pad=0,hg19_refFlat_ANK3:range=chr10:61802449-623322855'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ANK3:range=chr10:61802449-624930775'pad=0,hg19_refFlat_ANK3:range=chr10:61802449-624930775'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ANK3:range=chr10:61802449-619001255'pad=0,hg19_refFlat_ANK3:range=chr10:61802449-619001255'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70chr10:61809092-61830501"	NA	inner
CUST_5463_PI429285431	2.2432096	A	1.435915	A	1.74992683041743	0	lncRNA	5396-2_{3001..6000}	"transcript_id ""ENST00000566929.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566929.1"" | genecode_v17"	chr16	 24487119	 24490118	-	ENSG00000260072.1	ENST00000566929.1	CTD-2313J23.1	CTD-2313J23.1-001	NA	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-40.32;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40"	NA	inter
CUST_46448_PI429285431	1.0154599	A	1.0761073	A	0.958833752371021	0	lncRNA	50655-1_{1..572}	"gi|338827635|ref|NR_040062.1| Homo sapiens uncharacterized LOC100131089 (LOC100131089), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338827635|ref|NR_040062.1| Homo sapiens uncharacterized LOC100131089 (LOC100131089), transcript variant 4, non-coding RNA"	Chr15	 40331512	 40332083	+	100131089	NR_040062.1	NA	NA	NA	NA	NA	inter
CUST_32657_PI429285431	5.5215373	P	6.036154	P	0.699978880803861	0	lncRNA	34309-1_{1..3000}	n339281|D86977|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1713|NULL|19.1218000|-0.1453473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339281|D86977|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1713|NULL|19.1218000|-0.1453473	chr16	 72127833	 72130832	+	NA	NA	NA	NA	TXNL4B	NA	chr16:72118756-72128215	inner
CUST_28773_PI429285431	0.9072544	A	1.0833961	A	0.885066829970727	0	lncRNA	30480-1_{1..421}	n326178|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092702|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092702|-1.1179200|-0.2742722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326178|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092702|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092702|-1.1179200|-0.2742722	chr1	232858493	232858913	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21003_PI429285431	3.5572824	P	4.208407	P	0.636783738735561	0	lncRNA	22632-1_{1..2427}	lnc-TOPBP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TOPBP1-2:1	chr3	132975869	132978295	-	lnc-TOPBP1-2	lnc-TOPBP1-2:1	ENSG00000251011.1	RP11-402L6.1	TMEM108	NA	chr3:132965869-132986032	inner
CUST_43036_PI429285431	13.770664	P	14.028747	P	0.836198291025707	0	lncRNA	46597-1_{1..126}	ENST00000516415 ncrna:snRNA chromosome:GRCh37:9:33174168:33174293:1 gene:ENSG00000252224 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516415 ncrna:snRNA chromosome:GRCh37:9:33174168:33174293:1 gene:ENSG00000252224 gene_biotype:snRNA transcript_biotype:snRNA	chr9	 33174168	 33174293	+	ENSG00000252224	ENST00000516415	NA	NA	B4GALT1	NA	chr9:33164168-33167356	inter
CUST_17796_PI429285431	0.92026055	A	0.90928	A	1.00764017560362	0	lncRNA	19528-1_{1..1245}	lnc-AP001496.1-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP001496.1-9:1	chr18	  5850901	  5852145	+	lnc-AP001496.1-9	lnc-AP001496.1-9:1	XLOC_012617	linc-ARHGAP28-3	NA	NA	NA	inter
CUST_46307_PI429285431	2.430886	A	2.8213935	A	0.762861203915598	0	lncRNA	50538-1_{1..2324}	"gi|310123105|ref|XR_110290.1| PREDICTED: Homo sapiens uncharacterized LOC100506499 (LOC100506499), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310123105|ref|XR_110290.1| PREDICTED: Homo sapiens uncharacterized LOC100506499 (LOC100506499), misc_RNA"	NA	NA	NA	NA	NA	XR_110290.1	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.31;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.91;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-97.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20"	NA	Unknown
CUST_13932_PI429285431	8.618874	P	8.888128	P	0.829748487721901	0	lncRNA	15579-1_{1..345}	lnc-RPS24-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPS24-2:1	chr10	 79973571	 79973915	+	lnc-RPS24-2	lnc-RPS24-2:1	XLOC_008524	linc-ZMIZ1-1	NA	NA	NA	inter
CUST_39257_PI429285431	4.0973973	P	3.7303004	P	1.28975487537342	0	lncRNA	40228-1_{1..699}	n386142|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bow.2||1.4809300|-0.0804296	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386142|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bow.2||1.4809300|-0.0804296	chr15	100340121	100340819	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24801_PI429285431	2.18272	A	2.6363325	A	0.730212109970044	0	lncRNA	26344-1_{1..281}	lnc-FSIP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FSIP1-1:1	chr15	 39886256	 39886536	-	lnc-FSIP1-1	lnc-FSIP1-1:1	ENSG00000259279.1	CTD-2033D15.1	FSIP1	"hg19_refFlat_THBS1:range=chr15:39874059-398875705'pad=0,hg19_refFlat_THBS1:range=chr15:39874059-398875705'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.90chr15:39892232-39896432"	NA	inner
LNCA_21_P0003800	0.9956573	A	0.9270809	A	1.04868137153553	0	lncRNA	TCONS_00008664	NA	NA	NA	NA	XLOC_004177	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004177), lincRNA [TCONS_00008664]"	chr4:176372435-176366487	hs|4q34.2	Agilent_HUMAN_G3V2	TCONS_00008664	TCONS_00008664	chr4	176366487	176372435	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17969_PI429285431	0.9291212	A	0.91569346	A	1.00935084866385	0	lncRNA	19701-1_{1..377}	lnc-RAD23B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAD23B-3:2	chr9	109993916	109994292	+	lnc-RAD23B-3	lnc-RAD23B-3:2	XLOC_007504	linc-RAD23B-1	NA	NA	NA	inter
CUST_26514_PI429285431	1.0076232	A	0.9336237	A	1.05263078989534	0	lncRNA	28021-2_{3001..3843}	lnc-MFSD8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MFSD8-1:1	chr4	128764353	128765195	-	lnc-MFSD8-1	lnc-MFSD8-1:1	ENSG00000261668.1	RP11-50D9.3	HSPA4L	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90chr4:128751353-128754522"	NA	inter
CUST_5176_PI429285431	6.891013	P	6.894407	P	0.997650223526278	0	lncRNA	5117-1_{1..518}	"transcript_id ""ENST00000561094.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561094.1"" | genecode_v17"	chr15	 48481317	 48481834	-	ENSG00000259235.1	ENST00000561094.1	RP11-605F22.2	RP11-605F22.2-003	CTXN2	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-32.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.50chr15:48483867-48493157"	NA	inter
CUST_22026_PI429285431	5.2479906	P	5.8394127	P	0.663688370547671	0	lncRNA	23634-1_{1..605}	lnc-SFTA2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SFTA2-3:1	chr6	 30922554	 30923158	-	lnc-SFTA2-3	lnc-SFTA2-3:1	ENSG00000233529.1	HCG21	MUC21	"hg19_refFlat_DPCR1:range=chr6_qbl_hap6:2201750-22138665'pad=0,hg19_refFlat_DPCR1:range=chr6_qbl_hap6:2201750-22138665'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_DPCR1:range=chr6_cox_hap2:2420690-24327985'pad=0,hg19_refFlat_DPCR1:range=chr6_cox_hap2:2420690-24327985'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_DPCR1:range=chr6:30908777-309208945'pad=0,hg19_refFlat_DPCR1:range=chr6:30908777-309208945'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_DPCR1:range=chr6_dbb_hap3:2202893-22150095'pad=0,hg19_refFlat_DPCR1:range=chr6_dbb_hap3:2202893-22150095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80chr6:30929178-30932639"	NA	inter
CUST_52208_PI429285431	3.2227578	A	3.7865603	P	0.676516722003784	0	lncRNA	55725-1_{1..428}	hg19_lincRNAsTranscripts_TCONS_l2_00018072 range=chr22:42548959-42551006 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018072 range=chr22:42548959-42551006 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 42548959	 42549386	-	NA	NA	NA	NA	TCF20	NA	chr22:42556019-42561006	inter
CUST_25219_PI429285431	1.0146359	A	0.9503948	A	1.04553481306829	0	lncRNA	26750-1_{1..453}	lnc-FOXG1-6:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXG1-6:13	chr14	 27275442	 27275894	+	lnc-FOXG1-6	lnc-FOXG1-6:13	ENSG00000257842.1	NOVA1-AS1	NA	NA	NA	inter
CUST_37275_PI429285431	1.6145492	A	2.0036733	A	0.763593062212087	0	lncRNA	38384-1_{1..3000}	n345716|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1265|NULL|-1.2950200|-0.2443421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345716|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1265|NULL|-1.2950200|-0.2443421	chr20	 46011781	 46014780	-	NA	NA	NA	NA	NA	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.62;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20"	NA	inter
CUST_32295_PI429285431	4.3086624	P	4.640169	P	0.79470614218771	0	lncRNA	33979-1_{1..3000}	n338872|AK124872|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1298|NULL|-1.1708100|-0.3980945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338872|AK124872|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1298|NULL|-1.1708100|-0.3980945	chr2	 69698058	 69701057	-	NA	NA	NA	NA	AAK1	NA	chr2:69688058-69711735	inner
CUST_28026_PI429285431	11.245467	P	11.271055	P	0.982420111439963	0	lncRNA	29641-1_{1..1386}	n325288|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327323|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327323|-1.3385300|-0.3480105	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325288|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327323|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327323|-1.3385300|-0.3480105	chr2	 64687612	 64688997	+	NA	NA	NA	NA	HSPC159	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80chr2:64681327-64688517"	NA	inner
CUST_19440_PI429285431	2.3316548	A	2.3019426	A	1.02080846660119	0	lncRNA	21100-1_{1..223}	lnc-FAM126B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM126B-2:2	chr2	202008859	202009081	-	lnc-FAM126B-2	lnc-FAM126B-2:2	ENSG00000226312.2	CFLAR-AS1	CFLAR	"hg19_refFlat_CFLAR:range=chr2:201994589-2020286965'pad=0,hg19_refFlat_CFLAR:range=chr2:201994589-2020286965'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CFLAR:range=chr2:201997759-2020286965'pad=0,hg19_refFlat_CFLAR:range=chr2:201997759-2020286965'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CFLAR:range=chr2:201997759-2020278035'pad=0,hg19_refFlat_CFLAR:range=chr2:201997759-2020278035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CFLAR:range=chr2:201994589-2020061565'pad=0,hg19_refFlat_CFLAR:range=chr2:201994589-2020061565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90chr2:201998859-202018919"	NA	inner
CUST_13678_PI429285431	4.5589566	P	4.9962296	P	0.738529267280066	0	lncRNA	15317-1_{1..1016}	lnc-MBOAT1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MBOAT1-2:3	chr6	 19804402	 19805417	-	lnc-MBOAT1-2	lnc-MBOAT1-2:3	XLOC_005634	linc-DEK-1	NA	NA	NA	inter
CUST_10786_PI429285431	0.9132309	A	1.6482034	A	0.600829477393874	0	lncRNA	12322-1_{1..358}	lnc-NRAP-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NRAP-2:2	chr10	115251752	115252109	-	lnc-NRAP-2	lnc-NRAP-2:2	XLOC_008955	linc-ZDHHC6-2	NA	NA	NA	inter
LNCA_21_P0011044	0.9705027	A	0.9198072	A	1.03576412867584	0	lncRNA	TCONS_l2_00005589	NA	NA	NA	NA	XLOC_l2_002945	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002945), lincRNA [TCONS_l2_00005589]"	chr12:37970281-37970340	hs|12q11	Agilent_HUMAN_G3V2	TCONS_l2_00005589	TCONS_l2_00005589	chr12	 37970281	 37970340	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6787_PI429285431	0.91066265	A	1.0111796	A	0.93269872477457	0	lncRNA	6735-1_{1..1117}	"transcript_id ""ENST00000447175.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000447175.1"" | genecode_v17"	chr21	 19207333	 19208449	-	ENSG00000231755.1	ENST00000447175.1	CHODL-AS1	CHODL-AS1-001	NA	NA	NA	inter
CUST_14037_PI429285431	3.0611815	P	3.1211526	P	0.959283335451982	0	lncRNA	15683-1_{1..536}	lnc-RP11-362K2.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-362K2.2.1-2:1	chr12	 59524433	 59524968	+	lnc-RP11-362K2.2.1-2	lnc-RP11-362K2.2.1-2:1	XLOC_009782	linc-SLC16A7-2	NA	NA	NA	inter
LNCA_21_P0005313	4.058326	P	4.1753325	P	0.922098963426344	0	lncRNA	ENST00000413094	NA	NA	NA	NA	XLOC_006489	NA	ENST00000413094	NA	NA	"BROAD Institute lincRNA (XLOC_006489), lincRNA [TCONS_00013190]"	chr7:68652892-68652833	hs|7q11.22	Agilent_HUMAN_G3V2	ENST00000413094	ENST00000413094	chr7	 68652833	 68652892	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11051_PI429285431	8.29941	P	8.2044735	P	1.068018398348	0	lncRNA	12598-1_{1..354}	lnc-GRAMD4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRAMD4-2:2	chr22	 46943822	 46944175	+	lnc-GRAMD4-2	lnc-GRAMD4-2:2	XLOC_014270	linc-GRAMD4-2	NA	NA	NA	inter
CUST_38414_PI429285431	0.9245909	A	0.9090893	A	1.01080282397928	0	lncRNA	39444-1_{1..1626}	n382452|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zeg.2||-0.9913450|-0.1707270	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382452|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zeg.2||-0.9913450|-0.1707270	chr15	 30702036	 30703661	+	NA	NA	NA	NA	LOC100652910	"hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0,hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0,hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0,hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_GOLGA8B:range=chr15:34819833-348281135'pad=0,hg19_refFlat_GOLGA8B:range=chr15:34819833-348281135'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_GOLGA8A:range=chr15:34673612-346818925'pad=0,hg19_refFlat_GOLGA8A:range=chr15:34673612-346818925'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0,hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10chr15:30692036-30706365"	NA	inter
CUST_1799_PI429285431	0.9057923	A	0.8913197	A	1.01008212748142	0	lncRNA	1786-1_{1..370}	"transcript_id ""ENST00000504368.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504368.1"" | genecode_v17"	chr4	 74375928	 74376297	+	ENSG00000250436.1	ENST00000504368.1	RP11-622A1.2	RP11-622A1.2-003	AFM	NA	chr4:74365928-74369718	inter
CUST_32726_PI429285431	2.478796	A	1.7518318	A	1.6551525595838	0	lncRNA	34367-1_{1..586}	n339355|AF099153|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1787|NULL|-1.2567700|-0.2707258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339355|AF099153|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1787|NULL|-1.2567700|-0.2707258	chr3	 49021338	 49021923	-	NA	NA	NA	NA	ARIH2	NA	chr3:49011338-49022974	inner
CUST_33270_PI429285431	0.917952	A	0.90042436	A	1.01222333598332	0	lncRNA	34855-1_{1..677}	n339977|AF086092|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2430|NULL|-1.3444200|-0.6264007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339977|AF086092|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2430|NULL|-1.3444200|-0.6264007	chr4	 46245564	 46246240	-	NA	NA	NA	NA	GABRA2	NA	chr4:46251575-46256232	inter
CUST_13904_PI429285431	1.099491	A	0.91237783	A	1.13848333215125	0	lncRNA	15551-1_{1..2886}	lnc-FAM160A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM160A1-1:2	chr4	152591103	152593988	+	lnc-FAM160A1-1	lnc-FAM160A1-1:2	XLOC_003734	linc-ARFIP1-8	FAM160A1	NA	chr4:152581103-152584784	inter
CUST_18331_PI429285431	2.0750873	A	1.6535344	A	1.3393684596418	0	lncRNA	20060-1_{1..994}	lnc-GPR89B-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GPR89B-7:1	chr1	147900876	147901869	+	lnc-GPR89B-7	lnc-GPR89B-7:1	ENSG00000231551	RP11-495P10.1	PPIAL4A	NA	chr1:147907427-147911125	inter
CUST_875_PI429285431	1.2647599	A	0.9307591	A	1.26050409055468	0	lncRNA	865-5_{12001..13458}	"transcript_id ""ENST00000418539.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000418539.1"" | genecode_v17"	chr2	 47570199	 47571656	+	ENSG00000236824.1	ENST00000418539.1	BCYRN1	BCYRN1-001	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.20;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.01;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-94.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50"	NA	inter
CUST_35151_PI429285431	3.021738	A	3.3451478	P	0.799178790002832	0	lncRNA	36553-1_{1..1839}	n342123|BC033773|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4606|NULL|-1.0596300|-0.3028173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342123|BC033773|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4606|NULL|-1.0596300|-0.3028173	chr6	128349009	128350847	+	NA	NA	NA	NA	PTPRK	"hg19_refFlat_PTPRK:range=chr6:128291372-1288415035'pad=0,hg19_refFlat_PTPRK:range=chr6:128291372-1288415035'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10chr6:128339009-128417438"	NA	inner
CUST_45153_PI429285431	11.28958	P	10.882256	P	1.32622356972995	0	lncRNA	49631-1_{1..2784}	"gi|291463264|ref|NR_033404.1| Homo sapiens bone morphogenetic protein 1 (BMP1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|291463264|ref|NR_033404.1| Homo sapiens bone morphogenetic protein 1 (BMP1), transcript variant 5, non-coding RNA"	Chr8	 22022653	 22025436	+	649	NR_033404.1	NA	NA	NA	NA	NA	inter
CUST_5800_PI429285431	0.9165388	A	0.8976481	A	1.01318013772425	0	lncRNA	5723-1_{1..414}	"transcript_id ""ENST00000584958.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584958.1"" | genecode_v17"	chr17	 27679087	 27679500	+	ENSG00000266111.1	ENST00000584958.1	RP11-296K13.4	RP11-296K13.4-001	TAOK1	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60chr17:27717943-27741118"	NA	inner
CUST_17904_PI429285431	2.425346	A	2.3458676	A	1.0566359494479	0	lncRNA	19636-1_{1..407}	lnc-KLHL32-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL32-4:1	chr6	 98345486	 98345892	+	lnc-KLHL32-4	lnc-KLHL32-4:1	XLOC_005397	linc-POU3F2-3	NA	NA	NA	inter
CUST_49163_PI429285431	1.2085239	A	1.1172537	A	1.0653077044523	0	lncRNA	52989-1_{1..513}	hg19_lincRNAsTranscripts_TCONS_l2_00020771 range=chr4:135855427-135861557 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020771 range=chr4:135855427-135861557 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	135855427	135855939	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10609_PI429285431	10.235493	P	11.380908	P	0.452059632373939	0	lncRNA	12139-1_{1..247}	lnc-RNF144A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF144A-1:1	chr2	  7215204	  7215450	+	lnc-RNF144A-1	lnc-RNF144A-1:1	XLOC_001329	linc-ID2-5	NA	NA	NA	inter
CUST_1641_PI429285431	0.91205275	A	0.90449417	A	1.00525295706865	0	lncRNA	1626-1_{1..604}	"transcript_id ""ENST00000451228.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451228.1"" | genecode_v17"	chr3	195416246	195416849	+	ENSG00000242086.3	ENST00000451228.1	AC069513.3	AC069513.3-011	MUC20	NA	chr3:195447753-195448746	inter
CUST_23671_PI429285431	7.087138	P	7.6271424	P	0.687768811476618	0	lncRNA	25236-1_{1..647}	lnc-KRT80-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KRT80-3:1	chr12	 52475836	 52476482	-	lnc-KRT80-3	lnc-KRT80-3:1	ENSG00000257663.1	RP11-1100L3.7	C12orf44	"hg19_refFlat_C12orf44:range=chr12:52467435-524709745'pad=0,hg19_refFlat_C12orf44:range=chr12:52467435-524709745'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10chr12:52465836-52471279"	NA	inter
CUST_28746_PI429285431	12.459379	P	12.40459	P	1.03870717705132	0	lncRNA	30449-1_{1..673}	n326143|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096168|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096168|-0.8737080|-0.2998813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326143|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096168|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096168|-0.8737080|-0.2998813	chr1	241318052	241318724	-	NA	NA	NA	NA	RGS7	NA	chr1:241308052-241341643	inner
CUST_41465_PI429285431	3.3159955	P	2.1983922	A	2.16986201154233	0	lncRNA	42656-1_{1..88}	ENST00000582434 ncrna:miRNA chromosome:GRCh37:22:28316513:28316600:-1 gene:ENSG00000264073 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582434 ncrna:miRNA chromosome:GRCh37:22:28316513:28316600:-1 gene:ENSG00000264073 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 28316513	 28316600	-	ENSG00000264073	ENST00000582434	NA	NA	PITPNB	NA	chr22:28306513-28315255	inter
CUST_50215_PI429285431	6.6918154	P	6.3661766	P	1.25321921922887	0	lncRNA	53940-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00029312 range=chr9:66523686-66559785 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029312 range=chr9:66523686-66559785 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 66526686	 66529685	-	NA	NA	NA	NA	LOC100132004	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr9:66544359-66569785"	NA	inter
CUST_3890_PI429285431	0.9085378	A	0.90894264	A	0.999719425663765	0	lncRNA	3859-1_{1..806}	"transcript_id ""ENST00000525309.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525309.1"" | genecode_v17"	chr11	 28000216	 28001021	-	ENSG00000255094.1	ENST00000525309.1	RP11-406D1.2	RP11-406D1.2-001	KIF18A	NA	chr11:28042163-28051122	inter
CUST_20608_PI429285431	0.9129089	A	0.89978844	A	1.00913588965137	0	lncRNA	22247-1_{1..548}	lnc-ATXN7-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATXN7-7:3	chr3	 64554335	 64554882	+	lnc-ATXN7-7	lnc-ATXN7-7:3	ENSG00000241158.1	ADAMTS9-AS1	ADAMTS9	"hg19_refFlat_ADAMTS9:range=chr3:64507847-646733335'pad=0,hg19_refFlat_ADAMTS9:range=chr3:64507847-646733335'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00chr3:64544335-64564748"	NA	inner
CUST_50362_PI429285431	7.000014	P	7.149959	P	0.901284821722707	0	lncRNA	54076-1_{1..1584}	hg19_lincRNAsTranscripts_TCONS_l2_00029662 range=chr9:140065323-140067457 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029662 range=chr9:140065323-140067457 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	140065323	140066906	-	NA	NA	NA	NA	GRIN1	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.52;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40chr9:140055323-140063214"	NA	inter
CUST_2560_PI429285431	1.0936671	A	0.9163835	A	1.1307528247569	0	lncRNA	2548-1_{1..570}	"transcript_id ""ENST00000455554.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455554.2"" | genecode_v17"	chr6	 77232168	 77232737	-	ENSG00000236635.2	ENST00000455554.2	RP11-35J1.1	RP11-35J1.1-001	NA	NA	NA	inter
CUST_17336_PI429285431	2.737741	A	3.0480864	A	0.806448661785398	0	lncRNA	19054-1_{1..292}	lnc-CMPK2-13:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMPK2-13:12	chr2	  5774551	  5774842	-	lnc-CMPK2-13	lnc-CMPK2-13:12	XLOC_001958	linc-RNASEH1-2	NA	NA	NA	inter
CUST_45761_PI429285431	6.1829863	P	6.2587466	P	0.948841949648001	0	lncRNA	50106-1_{1..1514}	"gi|354682002|ref|NR_045417.1| Homo sapiens A kinase (PRKA) interacting protein 1 (AKIP1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|354682002|ref|NR_045417.1| Homo sapiens A kinase (PRKA) interacting protein 1 (AKIP1), transcript variant 5, non-coding RNA"	Chr11	  8932739	  8934252	+	56672	NR_045417.1	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_26096_PI429285431	0.9125727	A	0.91554785	A	0.997939908073968	0	lncRNA	27609-1_{1..1893}	lnc-PACRGL-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PACRGL-5:1	chr4	 22330939	 22332831	+	lnc-PACRGL-5	lnc-PACRGL-5:1	ENSG00000250039.2	RP11-17E2.2	NA	NA	NA	inter
CUST_45540_PI429285431	6.127316	P	4.87364	P	2.38448217826479	0	lncRNA	49943-2_{3001..4064}	"gi|409168318|ref|NR_073197.1| Homo sapiens acyl-CoA binding domain containing 5 (ACBD5), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|409168318|ref|NR_073197.1| Homo sapiens acyl-CoA binding domain containing 5 (ACBD5), transcript variant 7, non-coding RNA"	Chr10	 27487143	 27488206	-	91452	NR_073197.1	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50"	NA	inter
CUST_41694_PI429285431	0.9329335	A	1.1986668	A	0.831775848203704	0	lncRNA	43173-1_{1..97}	ENST00000384959 ncrna:miRNA chromosome:GRCh37:7:126698142:126698238:-1 gene:ENSG00000207692 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384959 ncrna:miRNA chromosome:GRCh37:7:126698142:126698238:-1 gene:ENSG00000207692 gene_biotype:miRNA transcript_biotype:miRNA	chr7	126698142	126698238	-	ENSG00000207692	ENST00000384959	NA	NA	GRM8	NA	chr7:126688142-126708238	inter
CUST_10886_PI429285431	1.4036189	A	1.6818727	A	0.824588473623234	0	lncRNA	12427-1_{1..529}	lnc-CDH3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH3-1:1	chr16	 68761056	 68761584	+	lnc-CDH3-1	lnc-CDH3-1:1	XLOC_011769	linc-CDH1	CDH1	NA	chr16:68771195-68771392	inter
CUST_42958_PI429285431	10.942563	P	11.042225	P	0.933251611610731	0	lncRNA	46090-1_{1..148}	ENST00000410557 ncrna:snoRNA chromosome:GRCh37:14:20791338:20791485:-1 gene:ENSG00000222489 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410557 ncrna:snoRNA chromosome:GRCh37:14:20791338:20791485:-1 gene:ENSG00000222489 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 20791338	 20791485	-	ENSG00000222489	ENST00000410557	NA	NA	CCNB1IP1	NA	chr14:20781338-20801457	inner
CUST_44464_PI429285431	0.91179895	A	0.90913224	A	1.00185013190383	0	lncRNA	49068-1_{1..1746}	"gi|397139079|ref|XR_158974.1| PREDICTED: Homo sapiens uncharacterized LOC100996305 (LOC100996305), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|397139079|ref|XR_158974.1| PREDICTED: Homo sapiens uncharacterized LOC100996305 (LOC100996305), misc_RNA"	NA	NA	NA	NA	NA	XR_158974.1	NA	NA	NA	NA	NA	Unknown
CUST_12581_PI429285431	0.90541184	A	1.5240653	A	0.651278515196459	0	lncRNA	14190-1_{1..277}	lnc-PPIC-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPIC-2:1	chr5	122082407	122082683	-	lnc-PPIC-2	lnc-PPIC-2:1	XLOC_004975	linc-LOX-3	NA	NA	NA	inter
CUST_19662_PI429285431	1.0584923	A	0.9132028	A	1.10595255825148	0	lncRNA	21318-1_{1..832}	lnc-CDC73-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CDC73-3:1	chr1	194167441	194168272	+	lnc-CDC73-3	lnc-CDC73-3:1	ENSG00000227240.1	RP11-563D10.1	NA	NA	NA	inter
CUST_27871_PI429285431	0.91965866	A	0.9151666	A	1.00311851119424	0	lncRNA	29464-1_{1..691}	n325107|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329757|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329757|-1.0868800|-0.2276083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325107|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329757|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329757|-1.0868800|-0.2276083	chr2	235658204	235658894	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37586_PI429285431	4.0560055	P	3.88158	P	1.12851492594136	0	lncRNA	38687-1_{1..275}	n346063|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1613|NULL|-1.2799600|-0.2223816	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346063|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1613|NULL|-1.2799600|-0.2223816	chr6	 26892897	 26893171	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29473_PI429285431	7.6488576	P	8.831596	P	0.440514557138287	0	lncRNA	31231-1_{1..342}	n332890|AF086055|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066934|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066934|-0.9036590|-0.2091322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332890|AF086055|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066934|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066934|-0.9036590|-0.2091322	chr19	 56132097	 56132438	-	NA	NA	NA	NA	ZNF784	NA	chr19:56132107-56135941	inner
LNCA_21_P0007936	5.4001646	P	5.706706	P	0.808577856501569	0	lncRNA	TCONS_00021546	NA	NA	NA	NA	XLOC_010377	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010377), lincRNA [TCONS_00021546]"	chr13:45918916-45918975	hs|13q14.13	Agilent_HUMAN_G3V2	TCONS_00021546	TCONS_00021546	chr13	 45918916	 45918975	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34239_PI429285431	0.92668617	A	0.91749454	A	1.00639149138209	0	lncRNA	35746-1_{1..3000}	n341097|AL833615|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3563|NULL|-0.8043170|-0.3959733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341097|AL833615|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3563|NULL|-0.8043170|-0.3959733	chr11	 93459819	 93462818	-	NA	NA	NA	NA	KIAA1731	"hg19_refFlat_KIAA1731:range=chr11:93399874-934634355'pad=0,hg19_refFlat_KIAA1731:range=chr11:93399874-934634355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.10chr11:93449819-93463522"	NA	inner
CUST_49490_PI429285431	2.308319	A	3.2547777	P	0.518904625073353	0	lncRNA	53282-1_{1..1053}	hg19_lincRNAsTranscripts_TCONS_l2_00024610 range=chr6:10474354-10482177 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024610 range=chr6:10474354-10482177 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 10474354	 10475406	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22838_PI429285431	0.90430874	A	0.9502765	A	0.968639835242222	0	lncRNA	24417-1_{1..563}	lnc-API5-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-API5-5:2	chr11	 41847701	 41848263	+	lnc-API5-5	lnc-API5-5:2	ENSG00000255171.1	RP11-375D13.2	NA	NA	NA	inter
CUST_15765_PI429285431	1.704128	A	1.5629948	A	1.10277097413007	0	lncRNA	17453-1_{1..344}	lnc-RNF150-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF150-3:1	chr4	142497145	142497488	-	lnc-RNF150-3	lnc-RNF150-3:1	XLOC_004104	linc-RNF150-1	NA	NA	NA	inter
CUST_7661_PI429285431	2.9112415	A	2.846427	A	1.04595044409102	0	lncRNA	9293-1_{1..531}	lnc-NSG1.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NSG1.1-1:5	chr4	  4546465	  4546995	+	lnc-NSG1.1-1	lnc-NSG1.1-1:5	ENSG00000247708	RP11-323F5.2	STX18	NA	chr4:4536465-4543775	inter
CUST_27623_PI429285431	0.9664885	A	0.921016	A	1.03202112330429	0	lncRNA	29201-1_{1..900}	n324827|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171732|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171732|-1.2763100|-0.3141548	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324827|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171732|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171732|-1.2763100|-0.3141548	chr21	 28738740	 28739639	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13431_PI429285431	8.610352	P	8.632513	P	0.984756541186902	0	lncRNA	15070-1_{1..608}	lnc-C9orf79-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf79-1:2	chr9	 90493477	 90494084	+	lnc-C9orf79-1	lnc-C9orf79-1:2	XLOC_007440	linc-C9orf79-1	C9orf79	NA	chr9:90497772-90503814	inter
CUST_33173_PI429285431	8.172309	P	7.75808	P	1.33258633067224	0	lncRNA	34766-1_{1..1112}	n339863|CR614809|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2311|NULL|5.3085600|-0.2920674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339863|CR614809|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2311|NULL|5.3085600|-0.2920674	chr4	 13616017	 13617128	-	NA	NA	NA	NA	BOD1L	NA	chr4:13606017-13629328	inner
CUST_35495_PI429285431	1.1071553	A	1.0995977	A	1.00525227421639	0	lncRNA	36904-1_{1..3000}	n342595|AL833330|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5096|NULL|0.2538630|-0.2982721	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342595|AL833330|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5096|NULL|0.2538630|-0.2982721	chr10	 48927412	 48930411	-	NA	NA	NA	NA	FRMPD2	"hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60chr10:49258300-49258867"	NA	inter
CUST_50691_PI429285431	0.9008689	A	1.6731029	A	0.585510115250856	0	lncRNA	54362-1_{1..533}	hg19_lincRNAsTranscripts_TCONS_l2_00003558 range=chr10:49265281-49267984 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003558 range=chr10:49265281-49267984 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 49265281	 49265813	-	NA	NA	NA	NA	FRMPD2	NA	chr10:49258300-49277984	inter
CUST_16581_PI429285431	0.92152226	A	0.92673534	A	0.996393088884042	0	lncRNA	18282-1_{1..213}	lnc-AP4S1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP4S1-2:1	chr14	 31995258	 31995470	+	lnc-AP4S1-2	lnc-AP4S1-2:1	XLOC_010789	linc-NUBPL-2	NA	NA	NA	inter
CUST_280_PI429285431	0.91780025	A	1.3427849	A	0.744846656545516	0	lncRNA	272-1_{1..3000}	"transcript_id ""ENST00000440762.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440762.1"" | genecode_v17"	chr1	 73771853	 73774852	+	ENSG00000233973.1	ENST00000440762.1	RP4-598G3.1	RP4-598G3.1-001	NA	"hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70"	NA	inter
CUST_42392_PI429285431	5.885703	P	5.972282	P	0.941753242134673	0	lncRNA	45086-1_{1..72}	ENST00000365080 ncrna:snoRNA chromosome:GRCh37:14:101411986:101412057:1 gene:ENSG00000201950 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365080 ncrna:snoRNA chromosome:GRCh37:14:101411986:101412057:1 gene:ENSG00000201950 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101411986	101412057	+	ENSG00000201950	ENST00000365080	NA	NA	NA	NA	NA	inter
CUST_3954_PI429285431	0.90819144	A	0.90563464	A	1.00177381005441	0	lncRNA	3924-1_{1..534}	"transcript_id ""ENST00000533220.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533220.1"" | genecode_v17"	chr11	 58907188	 58907721	-	ENSG00000245571.2	ENST00000533220.1	AP001258.4	AP001258.4-002	FAM111A	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50chr11:58909560-58920244"	NA	inter
CUST_2925_PI429285431	4.621819	P	4.9623804	P	0.789733940662105	0	lncRNA	2906-1_{1..837}	"transcript_id ""ENST00000411856.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411856.1"" | genecode_v17"	chr7	125557925	125558761	+	ENSG00000197462.3	ENST00000411856.1	AC005276.1	AC005276.1-001	NA	NA	NA	inter
CUST_10959_PI429285431	1.5274353	A	2.0482316	A	0.696987022838511	0	lncRNA	12501-1_{1..1201}	lnc-SEPT9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEPT9-1:2	chr17	 75253706	 75254906	+	lnc-SEPT9-1	lnc-SEPT9-1:2	XLOC_012315	linc-SEPT9	NA	NA	NA	inter
CUST_19516_PI429285431	5.8809824	P	6.146467	P	0.831919246828286	0	lncRNA	21172-1_{1..471}	lnc-DGAT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DGAT2-1:1	chr11	 75626175	 75626645	+	lnc-DGAT2-1	lnc-DGAT2-1:1	ENSG00000255081.1	RP11-263C24.1	UVRAG	"hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00chr11:75616175-75636257"	NA	inner
CUST_11998_PI429285431	1.7467884	A	1.1216731	A	1.54233408362182	0	lncRNA	13579-1_{1..262}	lnc-AJAP1-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AJAP1-3:6	chr1	  5080795	  5081056	+	lnc-AJAP1-3	lnc-AJAP1-3:6	XLOC_000036	linc-KCNAB2-2	NA	NA	NA	inter
CUST_20271_PI429285431	3.7168205	P	4.532191	P	0.568262531791079	0	lncRNA	21914-1_{1..719}	lnc-ADAMTS18-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAMTS18-6:1	chr16	 78540389	 78541107	-	lnc-ADAMTS18-6	lnc-ADAMTS18-6:1	ENSG00000260733.1	RP11-264L1.4	WWOX	NA	chr16:78530389-78550465	inner
CUST_5916_PI429285431	1.7439988	A	1.2805297	A	1.37885342164964	0	lncRNA	5845-2_{3001..6000}	"transcript_id ""ENST00000584805.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584805.1"" | genecode_v17"	chr17	 56157252	 56160251	-	ENSG00000266290.1	ENST00000584805.1	RP11-159D12.10	RP11-159D12.10-001	DYNLL2	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10chr17:56160780-56167618"	NA	inter
CUST_48419_PI429285431	2.0321598	A	2.5587027	A	0.694216278469713	0	lncRNA	52271-1_{1..616}	hg19_lincRNAsTranscripts_TCONS_l2_00000578 range=chr1:148928062-148950992 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000578 range=chr1:148928062-148950992 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	148928062	148928677	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40071_PI429285431	1.6027734	A	1.8497655	A	0.84265144373415	0	lncRNA	40921-1_{1..3000}	n407337|NR_026800|lncRNA|Homosapiens||RefGeneNoncode|NR_026800||1.6663100|-0.1674070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407337|NR_026800|lncRNA|Homosapiens||RefGeneNoncode|NR_026800||1.6663100|-0.1674070	chr14	106383837	106386836	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1313_PI429285431	0.91692096	A	0.9150741	A	1.00128096553828	0	lncRNA	1302-1_{1..445}	"transcript_id ""ENST00000596963.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596963.1"" | genecode_v17"	chr3	 16572278	 16572722	+	ENSG00000269391.1	ENST00000596963.1	RP11-194G10.3	RP11-194G10.3-001	NA	NA	NA	inter
LNCA_21_P0005679	1.0059718	A	0.9868357	A	1.01335249261984	0	lncRNA	TCONS_00014664	NA	NA	NA	NA	XLOC_006763	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006763), lincRNA [TCONS_00014664]"	chr8:31034326-31034385	hs|8p12	Agilent_HUMAN_G3V2	TCONS_00014664	TCONS_00014664	chr8	 31034326	 31034385	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24186_PI429285431	3.1838417	P	2.8211374	A	1.28583390724575	0	lncRNA	25737-1_{1..524}	lnc-FBLN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBLN2-1:1	chr3	 13787741	 13788264	+	lnc-FBLN2-1	lnc-FBLN2-1:1	ENSG00000224514.1	AC093611.1	NA	NA	NA	inter
CUST_16336_PI429285431	2.4040272	A	1.8326935	A	1.48589657356865	0	lncRNA	18037-1_{1..357}	lnc-WDR7-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR7-4:2	chr18	 53817085	 53817441	+	lnc-WDR7-4	lnc-WDR7-4:2	XLOC_012687	linc-WDR7-1	NA	NA	NA	inter
LNCA_21_P0008111	3.629975	P	4.351593	P	0.606416956704757	0	lncRNA	TCONS_00021887	NA	NA	NA	NA	XLOC_010485	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010485), lincRNA [TCONS_00021887]"	chr13:104975832-105020474	hs|13q33.2	Agilent_HUMAN_G3V2	TCONS_00021887	TCONS_00021887	chr13	104975832	105020474	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34832_PI429285431	3.5673592	P	3.975375	P	0.75365920086534	0	lncRNA	36262-1_{1..566}	n341738|BC030123|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4211|NULL|4.0899500|-0.2487060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341738|BC030123|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4211|NULL|4.0899500|-0.2487060	chr9	102648603	102649168	-	NA	NA	NA	NA	STX17	NA	chr9:102668915-102678883	inter
CUST_45665_PI429285431	0.97855175	A	0.97310644	A	1.00378153329648	0	lncRNA	50041-1_{1..1474}	"gi|386268032|ref|NR_047683.1| Homo sapiens B-cell linker (BLNK), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386268032|ref|NR_047683.1| Homo sapiens B-cell linker (BLNK), transcript variant 9, non-coding RNA"	NW_003871070.1	     8097	     9570	+	29760	NR_047683.1	NA	NA	NA	NA	NA	Unknown
CUST_25395_PI429285431	1.3423367	A	1.2268735	A	1.08332280757144	0	lncRNA	26926-1_{1..537}	lnc-MAT2B-3:19	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAT2B-3:19	chr5	164556820	164557356	+	lnc-MAT2B-3	lnc-MAT2B-3:19	ENSG00000241956.5	CTC-340A15.2	NA	NA	NA	inter
CUST_38590_PI429285431	1.336736	A	0.9264573	A	1.3289425145744	0	lncRNA	39600-1_{1..1685}	n383660|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002soa.1||2.1206500|-0.2905659	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n383660|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002soa.1||2.1206500|-0.2905659	chr2	 79362628	 79364312	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10482_PI429285431	3.6902218	P	3.4566169	P	1.17576920715829	0	lncRNA	12010-1_{1..242}	lnc-TFCP2L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TFCP2L1-1:1	chr2	121896725	121896966	-	lnc-TFCP2L1-1	lnc-TFCP2L1-1:1	XLOC_002300	linc-SCTR-7	NA	NA	NA	inter
CUST_25301_PI429285431	0.97332835	A	1.0305679	A	0.961101330599544	0	lncRNA	26831-1_{1..784}	lnc-IBTK-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-IBTK-3:2	chr6	 82244291	 82245074	-	lnc-IBTK-3	lnc-IBTK-3:2	ENSG00000226089.2	RP1-300G12.2	NA	NA	NA	inter
CUST_52059_PI429285431	2.7336173	A	2.1650012	A	1.48310022953972	0	lncRNA	55590-1_{1..936}	hg19_lincRNAsTranscripts_TCONS_l2_00017315 range=chr21:47875175-47878518 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017315 range=chr21:47875175-47878518 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 47875175	 47876110	-	NA	NA	NA	NA	DIP2A	NA	chr21:47878862-47888518	inter
CUST_36630_PI429285431	1.3460591	A	1.6579311	A	0.805595762621359	0	lncRNA	37823-1_{1..344}	n345126|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_675|NULL|-1.3253200|-0.4653345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345126|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_675|NULL|-1.3253200|-0.4653345	chr10	112284812	112285155	+	NA	NA	NA	NA	NA	"hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90"	NA	inter
CUST_40776_PI429285431	7.9914727	P	7.270138	P	1.64870661947794	0	lncRNA	41493-3_{6001..6251}	n410504|NR_037646|lncRNA|Homosapiens||RefGeneNoncode|NR_037646||10.7920000|-0.2856322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410504|NR_037646|lncRNA|Homosapiens||RefGeneNoncode|NR_037646||10.7920000|-0.2856322	chr11	 57485994	 57486244	+	NA	NA	NA	NA	CTNND1	NA	chr11:57529234-57586652	inner
CUST_45809_PI429285431	1.7104111	A	2.4839268	A	0.584990175110714	0	lncRNA	50147-1_{1..3000}	"gi|387849357|ref|NR_049732.1| Homo sapiens membrane-spanning 4-domains, subfamily A, member 14 (MS4A14), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387849357|ref|NR_049732.1| Homo sapiens membrane-spanning 4-domains, subfamily A, member 14 (MS4A14), transcript variant 6, non-coding RNA"	Chr11	 60163487	 60166486	+	84689	NR_049732.1	NA	NA	NA	NA	NA	inter
CUST_35091_PI429285431	10.431071	P	10.677381	P	0.843049939902699	0	lncRNA	36498-1_{1..1923}	n342055|AK127402|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4536|NULL|7.7578600|-0.1443460	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n342055|AK127402|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4536|NULL|7.7578600|-0.1443460	chr12	123848414	123850336	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21285_PI429285431	2.815335	A	3.060583	A	0.84367075623867	0	lncRNA	22910-1_{1..631}	lnc-AC037487.1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AC037487.1-3:3	chr17	 62905713	 62906343	+	lnc-AC037487.1-3	lnc-AC037487.1-3:3	ENSG00000265218.1	RP11-927P21.1	LRRC37A3	NA	chr17:62895713-62914903	inner
CUST_4998_PI429285431	6.696225	P	6.9374123	P	0.846048749949896	0	lncRNA	4942-1_{1..632}	"transcript_id ""ENST00000556407.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556407.1"" | genecode_v17"	chr14	101245747	101246378	+	ENSG00000214548.9	ENST00000556407.1	MEG3	MEG3-029	NA	NA	NA	inter
LNCA_21_P0009165	4.7432327	P	5.278422	P	0.690068125013522	0	lncRNA	ENST00000444464	XR_109456	XR_109456	NA	Hs.615628	XLOC_012170	NA	ENST00000444464	THC2674252	NA	"PREDICTED: Homo sapiens hypothetical LOC100506643 (LOC100506643), miscRNA [XR_109456]"	chr17:31233543-31233602	hs|17q11.2	Agilent_HUMAN_G3V2	ENST00000444464	ENST00000444464	chr17	 31233543	 31233602	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16753_PI429285431	3.7231998	P	4.525456	P	0.573451667053038	0	lncRNA	18461-1_{1..343}	lnc-COPZ2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COPZ2-1:5	chr17	 46124571	 46124913	-	lnc-COPZ2-1	lnc-COPZ2-1:5	XLOC_012503	linc-COPZ2	NFE2L1	NA	chr17:46125686-46134834	inter
CUST_29592_PI429285431	1.8483871	A	2.2520738	A	0.755924105090054	0	lncRNA	31353-1_{1..211}	n333103|AF312681|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077065|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077065|1.3026900|-0.2345271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333103|AF312681|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077065|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077065|1.3026900|-0.2345271	chr5	137627771	137627981	-	NA	NA	NA	NA	CDC25C	NA	chr5:137620959-137667516	inner
CUST_5586_PI429285431	11.221714	P	10.735687	P	1.40058253250743	0	lncRNA	5515-1_{1..781}	"transcript_id ""ENST00000562656.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562656.1"" | genecode_v17"	chr16	 65266959	 65267739	+	ENSG00000260364.1	ENST00000562656.1	RP11-256I9.3	RP11-256I9.3-001	NA	NA	NA	inter
CUST_3283_PI429285431	0.91407	A	0.91821426	A	0.99713153978176	0	lncRNA	3261-1_{1..776}	"transcript_id ""ENST00000517739.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517739.1"" | genecode_v17"	chr8	121925305	121926080	+	ENSG00000253619.1	ENST00000517739.1	RP11-369K17.1	RP11-369K17.1-001	NA	NA	NA	inter
CUST_27882_PI429285431	1.8269079	A	1.4282775	A	1.31825585095625	0	lncRNA	29476-1_{1..765}	n325119|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324254|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324254|-1.1763900|-0.3765378	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325119|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324254|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324254|-1.1763900|-0.3765378	chr2	161809511	161810275	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22220_PI429285431	0.92702645	A	1.538976	A	0.654311916140948	0	lncRNA	23820-1_{1..464}	lnc-TMPRSS2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TMPRSS2-5:1	chr21	 42002584	 42003047	-	lnc-TMPRSS2-5	lnc-TMPRSS2-5:1	ENSG00000233756.1	DSCAM-IT1	DSCAM	NA	chr21:41992584-42012693	inter
CUST_45732_PI429285431	0.90195405	A	0.8977561	A	1.00291403477568	0	lncRNA	50085-16_{45001..48000}	"gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	Chr11	  2674558	  2677557	-	10984	NR_002728.3	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.02;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0,hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_6723_PI429285431	0.9066663	A	0.901458	A	1.00361664278699	0	lncRNA	6671-1_{1..374}	"transcript_id ""ENST00000422666.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422666.1"" | genecode_v17"	chr20	 51301661	 51302034	+	ENSG00000232294.1	ENST00000422666.1	RP4-715N11.2	RP4-715N11.2-001	NA	NA	NA	inter
CUST_28806_PI429285431	2.3228884	A	2.9998775	A	0.625469265649394	0	lncRNA	30514-1_{1..543}	n326218|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092152|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092152|-0.7408250|-0.3194235	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326218|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092152|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092152|-0.7408250|-0.3194235	chr1	221054986	221055528	+	NA	NA	NA	NA	HLX	NA	chr1:221052743-221058401	inner
CUST_11494_PI429285431	10.076256	P	9.936428	P	1.1017737531304	0	lncRNA	13062-1_{1..745}	lnc-PFDN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PFDN1-1:1	chr5	139532142	139532886	-	lnc-PFDN1-1	lnc-PFDN1-1:1	XLOC_005024	linc-NRG2-1	NA	NA	NA	inter
CUST_3422_PI429285431	0.9273619	A	0.9266039	A	1.00052554361254	0	lncRNA	3394-1_{1..834}	"transcript_id ""ENST00000601096.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601096.1"" | genecode_v17"	chr9	 67018912	 67019745	-	ENSG00000182021.5	ENST00000601096.1	RP11-381O7.3	RP11-381O7.3-005	NA	NA	NA	inter
CUST_43252_PI429285431	0.9168476	A	0.9183463	A	0.998961719706867	0	lncRNA	48069-1_{1..673}	ENST00000518552 havana:sense_intronic chromosome:GRCh37:8:56806154:56808298:1 gene:ENSG00000254325 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,ensembl.GRCh37.72,"	>ENST00000518552 havana:sense_intronic chromosome:GRCh37:8:56806154:56808298:1 gene:ENSG00000254325 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr8	 56806154	 56806826	+	ENSG00000254325	ENST00000518552	NA	NA	LYN	NA	chr8:56796154-56818298	inner
CUST_39646_PI429285431	2.7889063	A	2.9189365	P	0.91381232115488	0	lncRNA	40584-1_{1..934}	n405222|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000322473||-1.2413700|-0.3012085	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405222|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000322473||-1.2413700|-0.3012085	chr7	    45933	    46866	-	NA	NA	NA	NA	LOC100132858	NA	chr7:35933-36378	inter
CUST_27097_PI429285431	0.92810947	A	2.162875	A	0.424911551526348	0	lncRNA	28630-1_{1..578}	n324208|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328270|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328270|-1.0912900|-0.2893584	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324208|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328270|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328270|-1.0912900|-0.2893584	chr7	 28993168	 28993745	+	NA	NA	NA	NA	TRIL	NA	chr7:28992974-28998029	inner
CUST_2401_PI429285431	0.9118943	A	1.6416672	A	0.602998826666192	0	lncRNA	2393-1_{1..537}	"transcript_id ""ENST00000509568.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509568.1"" | genecode_v17"	chr5	153266988	153267524	-	ENSG00000251183.1	ENST00000509568.1	AC091962.3	AC091962.3-001	NA	NA	NA	inter
CUST_47481_PI429285431	7.1759243	P	7.0714903	P	1.07507253385254	0	lncRNA	51502-1_{1..1516}	"gi|298358761|ref|NR_033733.1| Homo sapiens crystallin, beta B2 pseudogene 1 (CRYBB2P1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298358761|ref|NR_033733.1| Homo sapiens crystallin, beta B2 pseudogene 1 (CRYBB2P1), transcript variant 1, non-coding RNA"	Chr22	 25844054	 25845569	+	1416	NR_033733.1	NA	NA	NA	NA	NA	inter
CUST_30195_PI429285431	9.666566	P	9.755399	P	0.940283039217549	0	lncRNA	31969-1_{1..342}	n334957|AJ459855|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248112_09|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248112_09|-1.0437400|-0.2008837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334957|AJ459855|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248112_09|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248112_09|-1.0437400|-0.2008837	chr6	   698708	   699049	-	NA	NA	NA	NA	EXOC2	NA	chr6:688708-693109	inter
CUST_14072_PI429285431	0.91762334	A	0.90586066	A	1.00818659688818	0	lncRNA	15718-1_{1..3000}	lnc-NDFIP2-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDFIP2-2:7	chr13	 79996122	 79999121	+	lnc-NDFIP2-2	lnc-NDFIP2-2:7	XLOC_010445	linc-NDFIP2-1	NA	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
CUST_28836_PI429285431	10.218731	P	10.248802	P	0.9793720981213	0	lncRNA	30544-1_{1..510}	n326249|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090178|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090178|-1.2299600|-0.3394137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326249|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090178|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090178|-1.2299600|-0.3394137	chr1	210408171	210408680	+	NA	NA	NA	NA	SERTAD4	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30chr1:210406195-210416460"	NA	inner
CUST_43492_PI429285431	3.1483028	P	3.4794898	P	0.794882212813096	0	lncRNA	48284-2_{3001..3790}	"gi|384551675|ref|NR_047583.1| Homo sapiens interleukin 12 receptor, beta 2 (IL12RB2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384551675|ref|NR_047583.1| Homo sapiens interleukin 12 receptor, beta 2 (IL12RB2), transcript variant 5, non-coding RNA"	Chr1	 67776047	 67776836	+	3595	NR_047583.1	NA	NA	NA	NA	NA	inter
CUST_30773_PI429285431	10.900693	P	10.519243	P	1.3026504440242	0	lncRNA	32559-1_{1..315}	n336613|Z36833|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327141|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327141|0.3492610|-0.1046845	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336613|Z36833|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327141|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327141|0.3492610|-0.1046845	chr16	 28251905	 28252219	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005573	5.5863547	P	5.571807	P	1.01013470903195	0	lncRNA	TCONS_00014191	NA	NA	NA	NA	XLOC_006200	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006200), lincRNA [TCONS_00014191]"	chr7:106416399-106416458	hs|7q22.3	Agilent_HUMAN_G3V2	TCONS_00014191	TCONS_00014191	chr7	106416399	106416458	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41092_PI429285431	5.4726667	P	5.4775834	P	0.99659780388686	0	lncRNA	41792-1_{1..82}	ENST00000585238 ncrna:miRNA chromosome:GRCh37:4:10080235:10080316:-1 gene:ENSG00000264931 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585238 ncrna:miRNA chromosome:GRCh37:4:10080235:10080316:-1 gene:ENSG00000264931 gene_biotype:miRNA transcript_biotype:miRNA	chr4	 10080235	 10080316	-	ENSG00000264931	ENST00000585238	NA	NA	WDR1	NA	chr4:10075963-10090316	inner
CUST_3152_PI429285431	1.5652516	A	1.75489	A	0.876825463082309	0	lncRNA	3131-1_{1..541}	"transcript_id ""ENST00000521061.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521061.1"" | genecode_v17"	chr8	 64345444	 64345984	-	ENSG00000253205.1	ENST00000521061.1	CTD-3046C4.1	CTD-3046C4.1-005	NA	NA	NA	inter
LNCA_21_P0002671	0.9924648	A	0.9255011	A	1.0475097701207	0	lncRNA	ENST00000448595	NA	NA	NA	NA	XLOC_002221	NA	ENST00000448595	THC2642798	NA	"BROAD Institute lincRNA (XLOC_002221), lincRNA [TCONS_00005211]"	chr2:99388314-99388255	hs|2q11.2	Agilent_HUMAN_G3V2	ENST00000448595	ENST00000448595	chr2	 99388255	 99388314	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41758_PI429285431	0.91916436	A	0.91648847	A	1.00185650678779	0	lncRNA	43311-1_{1..103}	ENST00000584362 ncrna:miRNA chromosome:GRCh37:14:101507104:101507206:1 gene:ENSG00000264882 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584362 ncrna:miRNA chromosome:GRCh37:14:101507104:101507206:1 gene:ENSG00000264882 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101507104	101507206	+	ENSG00000264882	ENST00000584362	NA	NA	NA	NA	NA	inter
CUST_5891_PI429285431	0.91723204	A	1.5813962	A	0.631054206179685	0	lncRNA	5822-1_{1..349}	"transcript_id ""ENST00000502300.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502300.1"" | genecode_v17"	chr17	 48580773	 48581121	-	ENSG00000249451.1	ENST00000502300.1	RP11-94C24.6	RP11-94C24.6-001	MYCBPAP	NA	chr17:48585745-48595689	inter
CUST_5625_PI429285431	0.95800227	A	0.9325286	A	1.01781380895922	0	lncRNA	5553-1_{1..466}	"transcript_id ""ENST00000567777.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567777.1"" | genecode_v17"	chr16	 76770239	 76770704	+	ENSG00000259995.1	ENST00000567777.1	CTD-2336H13.2	CTD-2336H13.2-001	NA	NA	NA	inter
CUST_24734_PI429285431	8.582623	P	8.857358	P	0.826602137799799	0	lncRNA	26280-1_{1..3000}	lnc-DGCR6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-DGCR6-2:1	chr22	 18977093	 18980092	+	lnc-DGCR6-2	lnc-DGCR6-2:1	ENSG00000237517.3	DGCR5	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00"	NA	inter
CUST_6683_PI429285431	12.407724	P	12.068325	P	1.26522941306055	0	lncRNA	6631-1_{1..548}	"transcript_id ""ENST00000419662.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419662.1"" | genecode_v17"	chr20	 32580317	 32580864	-	ENSG00000228265.1	ENST00000419662.1	RP5-1125A11.1	RP5-1125A11.1-002	RALY	NA	chr20:32581732-32592163	inner
CUST_11579_PI429285431	1.0864025	A	1.126268	A	0.972745630602474	0	lncRNA	13158-1_{1..297}	lnc-KLF13-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF13-1:4	chr15	 31511492	 31511788	+	lnc-KLF13-1	lnc-KLF13-1:4	XLOC_011201	linc-KLF13-1	LOC283710	NA	chr15:31514970-31521696	inter
LNCA_21_P0012545	1.4856641	A	1.7440549	A	0.836019906563059	0	lncRNA	ENST00000491849	NA	NA	NA	NA	XLOC_l2_010258	NA	ENST00000491849	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010258), lincRNA [TCONS_l2_00020148]"	chr3:84917356-84917297	hs|3p12.1	Agilent_HUMAN_G3V2	ENST00000491849	ENST00000491849	chr3	 84917297	 84917356	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38513_PI429285431	1.2398779	A	0.90429115	A	1.26189052054065	0	lncRNA	39524-1_{1..2147}	n383099|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gyh.1||-1.2799200|-0.2635095	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383099|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gyh.1||-1.2799200|-0.2635095	chr17	 20771745	 20773891	+	NA	NA	NA	NA	CCDC144NL	"hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-16.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_RNASEH1:range=chr2:3593375-36058505'pad=0,hg19_refFlat_RNASEH1:range=chr2:3593375-36058505'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70chr17:20766708-20799453"	NA	inner
LNCA_21_P0013479	4.7462735	P	4.8329525	P	0.941687967036505	0	lncRNA	TCONS_l2_00027752	NA	NA	NA	NA	XLOC_l2_014197	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014197), lincRNA [TCONS_l2_00027752]"	chr8:49294873-49294932	hs|8q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00027752	TCONS_l2_00027752	chr8	 49294873	 49294932	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48861_PI429285431	0.9287523	A	0.90783924	A	1.01460140260981	0	lncRNA	52697-1_{1..444}	hg19_lincRNAsTranscripts_TCONS_l2_00018430 range=chr3:6004427-6007164 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018430 range=chr3:6004427-6007164 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	  6004427	  6004870	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20494_PI429285431	2.4921765	A	3.3019016	A	0.570490552362262	0	lncRNA	22136-1_{1..574}	lnc-MAX-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAX-3:1	chr14	 65785209	 65785782	-	lnc-MAX-3	lnc-MAX-3:1	ENSG00000258760.1	CTD-2509G16.5	NA	NA	NA	inter
CUST_20513_PI429285431	6.2373667	P	6.494628	P	0.836674690976213	0	lncRNA	22155-1_{1..563}	lnc-AL353997.5.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL353997.5.1-1:4	chr17	 18324165	 18324727	+	lnc-AL353997.5.1-1	lnc-AL353997.5.1-1:4	ENSG00000205266.5	AL353997.3	LGALS9C	NA	chr17:18330120-18334540	inter
LNCA_21_P0001281	0.96186316	A	1.7095716	A	0.595548769349815	0	lncRNA	TCONS_00000886	NA	NA	NA	NA	XLOC_000136	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000136), lincRNA [TCONS_00000886]"	chr1:34833793-34833852	hs|1p34.3	Agilent_HUMAN_G3V2	TCONS_00000886	TCONS_00000886	chr1	 34833793	 34833852	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9908_PI429285431	0.914647	A	0.91915894	A	0.996877446851703	0	lncRNA	11432-1_{1..374}	lnc-ZNF736-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF736-2:1	chr7	 63849266	 63849639	+	lnc-ZNF736-2	lnc-ZNF736-2:1	XLOC_006124	linc-ZNF107-5	NA	NA	NA	inter
CUST_52170_PI429285431	0.9106059	A	1.6759918	A	0.588295986917231	0	lncRNA	55691-1_{1..744}	hg19_lincRNAsTranscripts_TCONS_l2_00017978 range=chr22:24340651-24347337 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017978 range=chr22:24340651-24347337 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 24340651	 24341394	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_770_PI429285431	0.9210063	A	1.677816	A	0.591803568115349	0	lncRNA	762-1_{1..467}	"transcript_id ""ENST00000416173.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416173.1"" | genecode_v17"	chr2	 15026771	 15027237	-	ENSG00000235127.1	ENST00000416173.1	AC068286.1	AC068286.1-001	NA	NA	NA	inter
CUST_17697_PI429285431	11.747241	P	11.77261	P	0.982569253378445	0	lncRNA	19426-1_{1..326}	lnc-RBBP6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RBBP6-1:1	chr16	 24652205	 24652530	+	lnc-RBBP6-1	lnc-RBBP6-1:1	XLOC_011676	linc-TNRC6A-2	NA	NA	NA	inter
CUST_50016_PI429285431	0.901331	A	0.8786612	A	1.01583761431664	0	lncRNA	53753-1_{1..373}	hg19_lincRNAsTranscripts_TCONS_l2_00027554 range=chr8:1067160-1087630 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027554 range=chr8:1067160-1087630 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	  1067160	  1067532	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30991_PI429285431	1.6232834	A	2.3072276	A	0.622461192538414	0	lncRNA	32779-1_{1..643}	n337154|AF399566|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383981|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383981|4.1787400|-0.1135053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337154|AF399566|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383981|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383981|4.1787400|-0.1135053	chr14	 22038028	 22038670	-	NA	NA	NA	NA	OR10G3	NA	chr14:22031949-22038875	inner
CUST_21820_PI429285431	6.1956816	P	6.240164	P	0.969637634321818	0	lncRNA	23430-1_{1..765}	lnc-EID1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EID1-1:1	chr15	 49103128	 49103892	+	lnc-EID1-1	lnc-EID1-1:1	ENSG00000259700.1	RP11-485O10.3	CEP152	NA	chr15:49093128-49103343	inner
CUST_34038_PI429285431	4.381242	P	4.625068	P	0.844502734737862	0	lncRNA	35570-1_{1..1082}	n340855|BC064478|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3319|NULL|2.5327800|-0.1678652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340855|BC064478|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3319|NULL|2.5327800|-0.1678652	chr6	 13614342	 13615423	-	NA	NA	NA	NA	RANBP9	NA	chr6:13621730-13625387	inner
CUST_28723_PI429285431	0.9276497	A	0.9252581	A	1.0016591055923	0	lncRNA	30423-1_{1..608}	n326113|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046450|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046450|-1.2989000|-0.2850145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326113|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046450|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046450|-1.2989000|-0.2850145	chr10	  3042722	  3043329	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8655_PI429285431	1.3909516	A	1.2124008	A	1.13174646472725	0	lncRNA	10207-1_{1..410}	lnc-SIRPA-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SIRPA-3:2	chr20	  1619056	  1619465	+	lnc-SIRPA-3	lnc-SIRPA-3:2	ENSG00000237914	RP11-77C3.3	SIRPG	NA	chr20:1609798-1629100	inner
CUST_42039_PI429285431	9.145722	P	9.136587	P	1.00635198834784	0	lncRNA	43919-1_{1..70}	ENST00000390190 ncrna:miRNA chromosome:GRCh37:X:153285371:153285440:-1 gene:ENSG00000211524 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390190 ncrna:miRNA chromosome:GRCh37:X:153285371:153285440:-1 gene:ENSG00000211524 gene_biotype:miRNA transcript_biotype:miRNA	chrX	153285371	153285440	-	ENSG00000211524	ENST00000390190	NA	NA	MECP2	NA	chrX:153287264-153295440	inter
CUST_526_PI429285431	3.1129706	A	3.5048938	P	0.762112984186664	0	lncRNA	518-1_{1..276}	"transcript_id ""ENST00000451690.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451690.1"" | genecode_v17"	chr1	192906430	192906705	-	ENSG00000234871.1	ENST00000451690.1	RP11-139E24.1	RP11-139E24.1-001	NA	NA	NA	inter
CUST_5678_PI429285431	3.9649484	P	5.044324	P	0.473233595067177	0	lncRNA	5603-1_{1..602}	"transcript_id ""ENST00000594398.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594398.1"" | genecode_v17"	chr16	 86523832	 86524433	-	ENSG00000268388.1	ENST00000594398.1	FENDRR	FENDRR-004	NA	NA	NA	inter
CUST_31051_PI429285431	6.022669	P	6.4271398	P	0.755513374455737	0	lncRNA	32841-1_{1..260}	n337274|BC127920|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389538|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389538|-1.0374100|-0.0820663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337274|BC127920|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389538|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389538|-1.0374100|-0.0820663	chr17	 42983072	 42983331	+	NA	NA	NA	NA	GFAP	NA	chr17:42982994-42992920	inner
CUST_39718_PI429285431	9.337443	P	7.7763376	P	2.95079848487936	0	lncRNA	40651-2_{3001..4033}	n405639|NR_002807|lncRNA|Homosapiens||RefGeneNoncode|NR_002807||1.8470700|-0.3030433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405639|NR_002807|lncRNA|Homosapiens||RefGeneNoncode|NR_002807||1.8470700|-0.3030433	chr8	146223250	146224282	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00"	NA	inter
CUST_12415_PI429285431	2.8922138	A	1.4607751	A	2.6971554997258	0	lncRNA	14028-1_{1..721}	lnc-LGALS9B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LGALS9B-2:1	chr17	 20481940	 20482660	-	lnc-LGALS9B-2	lnc-LGALS9B-2:1	XLOC_012419	linc-LGALS9B-2	CDRT15L2	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr17:20471940-20484224"	NA	inter
CUST_13822_PI429285431	0.9101103	A	0.9039251	A	1.00429645736214	0	lncRNA	15465-1_{1..1347}	lnc-KLF8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF8-1:1	chrX	 56325676	 56327022	+	lnc-KLF8-1	lnc-KLF8-1:1	XLOC_007993	linc-UBQLN2	NA	NA	NA	inter
CUST_5769_PI429285431	1.9756141	A	2.3614745	A	0.765322436488571	0	lncRNA	5693-1_{1..195}	"transcript_id ""ENST00000580225.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580225.1"" | genecode_v17"	chr17	 20088395	 20088589	+	ENSG00000263494.1	ENST00000580225.1	AC004702.2	AC004702.2-001	SPECC1	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-14.40;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-30.81;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20chr17:20078395-20218068"	NA	inner
CUST_51591_PI429285431	8.556349	P	8.915392	P	0.779681603598475	0	lncRNA	55155-1_{1..1011}	hg19_lincRNAsTranscripts_TCONS_l2_00010620 range=chr17:20744007-20747249 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010620 range=chr17:20744007-20747249 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 20744007	 20745017	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41249_PI429285431	2.7525616	A	2.8381293	P	0.942413623510916	0	lncRNA	42197-1_{1..74}	ENST00000580817 ncrna:miRNA chromosome:GRCh37:7:1883816:1883889:-1 gene:ENSG00000265089 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580817 ncrna:miRNA chromosome:GRCh37:7:1883816:1883889:-1 gene:ENSG00000265089 gene_biotype:miRNA transcript_biotype:miRNA	chr7	  1883816	  1883889	-	ENSG00000265089	ENST00000580817	NA	NA	MAD1L1	NA	chr7:1873816-1893889	inner
CUST_22264_PI429285431	4.6323395	P	4.649171	P	0.988401085360745	0	lncRNA	23865-1_{1..664}	lnc-TCIRG1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCIRG1-1:3	chr11	 67820829	 67821492	+	lnc-TCIRG1-1	lnc-TCIRG1-1:3	ENSG00000255031.1	RP11-802E16.3	CHKA	NA	chr11:67820326-67831229	inner
CUST_13011_PI429285431	8.396256	P	8.812974	P	0.749126882864534	0	lncRNA	14637-1_{1..243}	lnc-CBLB-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLB-4:1	chr3	104626189	104626431	-	lnc-CBLB-4	lnc-CBLB-4:1	XLOC_003195	linc-RPL24-1	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10"	NA	inter
CUST_11288_PI429285431	0.91403145	A	0.91646165	A	0.998316931672529	0	lncRNA	12848-1_{1..571}	lnc-MEIS2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MEIS2-6:1	chr15	 36619335	 36619905	-	lnc-MEIS2-6	lnc-MEIS2-6:1	XLOC_011424	linc-ATPBD4-3	NA	NA	NA	inter
CUST_50188_PI429285431	4.8244557	P	5.311596	P	0.713437868687399	0	lncRNA	53913-1_{1..744}	hg19_lincRNAsTranscripts_TCONS_l2_00029708 range=chr9:35478236-35482164 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029708 range=chr9:35478236-35482164 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 35478236	 35478979	+	NA	NA	NA	NA	RUSC2	NA	chr9:35468236-35492164	inter
LNCA_21_P0006860	0.92480254	A	2.6942463	A	0.293321807546995	0	lncRNA	TCONS_00018164	NA	NA	NA	NA	XLOC_008456	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008456), lincRNA [TCONS_00018164]"	chr10:37921772-37921831	hs|10p11.21	Agilent_HUMAN_G3V2	TCONS_00018164	TCONS_00018164	chr10	 37921772	 37921831	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20147_PI429285431	0.92381483	A	0.90550673	A	1.01277107027607	0	lncRNA	21792-1_{1..1039}	lnc-PRR15L-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRR15L-5:1	chr17	 46018702	 46019740	-	lnc-PRR15L-5	lnc-PRR15L-5:1	ENSG00000234494.2	AC003665.1	PNPO	NA	chr17:46018889-46026674	inter
CUST_36976_PI429285431	3.664855	P	3.5167716	P	1.10809640337651	0	lncRNA	38122-1_{1..1161}	n345438|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_987|NULL|-1.5519100|-0.2714056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345438|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_987|NULL|-1.5519100|-0.2714056	chr1	 40007391	 40008551	+	NA	NA	NA	NA	NA	"hg19_refFlat_PPIE:range=chr1:40204573-402190275'pad=0,hg19_refFlat_PPIE:range=chr1:40204573-402190275'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PPIE:range=chr1:40204573-402282965'pad=0,hg19_refFlat_PPIE:range=chr1:40204573-402282965'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PPIE:range=chr1:40204573-402294145'pad=0,hg19_refFlat_PPIE:range=chr1:40204573-402294145'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70"	NA	inter
CUST_32849_PI429285431	2.3382936	A	1.9722667	A	1.28879866076154	0	lncRNA	34483-1_{1..3000}	n339511|AL137447|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1952|NULL|-1.2487500|-0.3855686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339511|AL137447|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1952|NULL|-1.2487500|-0.3855686	chr3	124965119	124968118	-	NA	NA	NA	NA	ZNF148	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30chr3:124955119-124980132"	NA	inner
CUST_32670_PI429285431	8.984024	P	9.569581	P	0.666392006261648	0	lncRNA	34321-1_{1..2534}	n339297|AK025619|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1729|NULL|0.3039660|-0.2702380	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339297|AK025619|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1729|NULL|0.3039660|-0.2702380	chr3	 38492517	 38495050	-	NA	NA	NA	NA	ACVR2B	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20chr3:38495790-38506311"	NA	inner
CUST_32852_PI429285431	3.4504666	P	1.4205563	A	4.08379458377316	0	lncRNA	34485-1_{1..1782}	n339515|AK095149|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1956|NULL|-1.2148000|-0.2270072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339515|AK095149|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1956|NULL|-1.2148000|-0.2270072	chr3	126169967	126171748	-	NA	NA	NA	NA	ZXDC	NA	chr3:126159967-126181749	inner
LNCA_21_P0007444	5.7197304	P	5.9115963	P	0.875472702007826	0	lncRNA	TCONS_00019969	NA	NA	NA	NA	XLOC_009248	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009248), lincRNA [TCONS_00019969]"	chr11:91533988-91534047	hs|11q14.3	Agilent_HUMAN_G3V2	TCONS_00019969	TCONS_00019969	chr11	 91533988	 91534047	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36661_PI429285431	0.92931086	A	1.0657666	A	0.909751392862565	0	lncRNA	37852-1_{1..3000}	n345157|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_706|NULL|-1.2936500|-0.3024516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345157|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_706|NULL|-1.2936500|-0.3024516	chr11	130731860	130734859	-	NA	NA	NA	NA	SNX19	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80chr11:130745766-130754709"	NA	inter
CUST_3423_PI429285431	1.0788659	A	0.9962424	A	1.05894194663277	0	lncRNA	3395-1_{1..2060}	"transcript_id ""ENST00000603050.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000603050.1"" | genecode_v17"	chr9	 70921444	 70923503	+	ENSG00000234394.3	ENST00000603050.1	RP11-561O23.5	RP11-561O23.5-004	CBWD3	NA	chr9:70911444-70914932	inter
CUST_3105_PI429285431	2.31306	A	2.1468024	A	1.1221438267133	0	lncRNA	3085-1_{1..469}	"transcript_id ""ENST00000521930.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521930.1"" | genecode_v17"	chr8	 54427730	 54428198	+	ENSG00000254204.1	ENST00000521930.1	RP11-400K9.3	RP11-400K9.3-001	NA	NA	NA	inter
CUST_27630_PI429285431	1.0457754	A	0.9172007	A	1.09321313566901	0	lncRNA	29208-1_{1..1122}	n324834|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171689|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171689|-1.2816800|-0.3917178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324834|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171689|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171689|-1.2816800|-0.3917178	chr21	 28342636	 28343757	+	NA	NA	NA	NA	ADAMTS5	NA	chr21:28332636-28339439	inter
CUST_46948_PI429285431	2.6884563	A	2.3005123	A	1.30852727835757	0	lncRNA	51055-1_{1..3000}	"gi|260898766|ref|NR_029376.1| Homo sapiens uncharacterized LOC100294362 (LOC100294362), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|260898766|ref|NR_029376.1| Homo sapiens uncharacterized LOC100294362 (LOC100294362), non-coding RNA"	Chr17	 78325630	 78328629	-	100294362	NR_029376.1	NA	NA	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_RNF213:range=chr17:78237481-783672985'pad=0,hg19_refFlat_RNF213:range=chr17:78237481-783672985'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70"	NA	inter
CUST_41354_PI429285431	2.8408654	A	2.912911	A	0.951288208003699	0	lncRNA	42426-1_{1..129}	ENST00000408106 ncrna:miRNA chromosome:GRCh37:15:65054586:65054714:-1 gene:ENSG00000221033 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408106 ncrna:miRNA chromosome:GRCh37:15:65054586:65054714:-1 gene:ENSG00000221033 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 65054586	 65054714	-	ENSG00000221033	ENST00000408106	NA	NA	RBPMS2	NA	chr15:65044586-65064714	inner
CUST_5167_PI429285431	0.9247658	A	0.98104984	A	0.961738087562455	0	lncRNA	5107-1_{1..597}	"transcript_id ""ENST00000564565.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564565.1"" | genecode_v17"	chr15	 45506646	 45507242	-	ENSG00000261709.1	ENST00000564565.1	CTD-2651B20.8	CTD-2651B20.8-001	NA	NA	NA	inter
CUST_25854_PI429285431	9.135374	P	9.3597765	P	0.855949448405238	0	lncRNA	27375-1_{1..426}	lnc-USP6-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP6-1:4	chr17	  5017453	  5017878	+	lnc-USP6-1	lnc-USP6-1:4	ENSG00000234327.2	AC012146.7	ZNF232	"hg19_refFlat_ZNF527:range=chr19:37865101-378807815'pad=0,hg19_refFlat_ZNF527:range=chr19:37865101-378807815'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60chr17:5009031-5026397"	NA	inner
CUST_514_PI429285431	0.9136844	A	1.317965	A	0.755612985331587	0	lncRNA	506-1_{1..424}	"transcript_id ""ENST00000427337.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427337.1"" | genecode_v17"	chr1	187412760	187413183	+	ENSG00000231599.1	ENST00000427337.1	RP11-445P19.1	RP11-445P19.1-002	NA	NA	NA	inter
CUST_24578_PI429285431	0.90232897	A	0.8991385	A	1.00221391237807	0	lncRNA	26126-1_{1..562}	lnc-SLC38A2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC38A2-1:6	chr12	 46780649	 46781210	-	lnc-SLC38A2-1	lnc-SLC38A2-1:6	ENSG00000257496.1	RP11-474P2.4	NA	NA	NA	inter
LNCA_21_P0011444	0.925903	A	0.9181609	A	1.0053808397824	0	lncRNA	TCONS_l2_00009811	NA	NA	NA	NA	XLOC_l2_005276	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005276), lincRNA [TCONS_l2_00009811]"	chr16:70237572-70237631	hs|16q22.1	Agilent_HUMAN_G3V2	TCONS_l2_00009811	TCONS_l2_00009811	chr16	 70237572	 70237631	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17453_PI429285431	0.90955406	A	0.9134861	A	0.997278228315451	0	lncRNA	19177-1_{1..299}	lnc-LYPD6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYPD6-3:1	chr2	151070848	151071146	+	lnc-LYPD6-3	lnc-LYPD6-3:1	XLOC_001704	linc-TNFAIP6-5	NA	NA	NA	inter
CUST_3406_PI429285431	3.03234	P	2.9256406	A	1.07676199864243	0	lncRNA	3378-1_{1..798}	"transcript_id ""ENST00000586273.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586273.1"" | genecode_v17"	chr9	 42469884	 42470681	+	ENSG00000223839.3	ENST00000586273.1	FAM95B1	FAM95B1-011	CBWD7	NA	chr9:42478004-42484075	inter
CUST_44424_PI429285431	1.1619649	A	0.9260153	A	1.17768164701799	0	lncRNA	49037-1_{1..330}	"gi|310119447|ref|XR_109835.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 613 (LINC00613), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310119447|ref|XR_109835.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 613 (LINC00613), misc_RNA"	NA	NA	NA	NA	NA	XR_109835.1	NA	NA	NA	NA	NA	Unknown
CUST_15896_PI429285431	8.930828	P	8.987632	P	0.96139153113945	0	lncRNA	17588-1_{1..730}	lnc-CACNA1B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CACNA1B-1:3	chr9	141141988	141142717	+	lnc-CACNA1B-1	lnc-CACNA1B-1:3	XLOC_007621	TCONS_00016238	FAM157B	NA	chr9:141131988-141134172	inter
CUST_15716_PI429285431	9.366246	P	9.329335	P	1.02591485459594	0	lncRNA	17402-1_{1..413}	lnc-ABCA13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABCA13-1:1	chr7	 48750753	 48751165	+	lnc-ABCA13-1	lnc-ABCA13-1:1	XLOC_006091	linc-VWC2-4	NA	NA	NA	inter
CUST_31654_PI429285431	3.0970926	A	2.6369004	A	1.3757250840008	0	lncRNA	33405-1_{1..465}	n338176|Z36841|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|566|NULL|-1.4584400|-0.5091292	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338176|Z36841|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|566|NULL|-1.4584400|-0.5091292	chr15	101456346	101456810	-	NA	NA	NA	NA	LRRK1	NA	chr15:101459460-101466828	inner
CUST_2999_PI429285431	0.9066764	A	0.91498065	A	0.994260466942601	0	lncRNA	2978-2_{3001..3442}	"transcript_id ""ENST00000520390.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000520390.1"" | genecode_v17"	chr8	  9185561	  9186002	+	ENSG00000254235.1	ENST00000520390.1	RP11-115J16.1	RP11-115J16.1-001	NA	NA	NA	inter
CUST_11001_PI429285431	2.552356	A	2.3262022	A	1.16971235580333	0	lncRNA	12546-1_{1..486}	lnc-EXO1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXO1-1:1	chr1	242074676	242075161	+	lnc-EXO1-1	lnc-EXO1-1:1	XLOC_000638	linc-SDCCAG8	NA	NA	NA	inter
CUST_45760_PI429285431	1.3286752	A	0.90634704	A	1.34008838852741	0	lncRNA	50105-1_{1..1436}	"gi|394025676|ref|NR_073006.1| Homo sapiens LIM domain only 1 (rhombotin 1) (LMO1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|394025676|ref|NR_073006.1| Homo sapiens LIM domain only 1 (rhombotin 1) (LMO1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_073006.1	NA	NA	NA	NA	NA	Unknown
CUST_17577_PI429285431	5.963497	P	4.9278226	P	2.05007174549042	0	lncRNA	19302-5_{12001..12117}	lnc-NAP1L2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NAP1L2-1:5	chrX	 73073217	 73073333	-	lnc-NAP1L2-1	lnc-NAP1L2-1:5	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70"	NA	inter
CUST_6335_PI429285431	1.1441666	A	1.1137862	A	1.02128137472415	0	lncRNA	6258-1_{1..495}	"transcript_id ""ENST00000415793.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415793.1"" | genecode_v17"	chr19	 12305830	 12306324	+	ENSG00000234773.2	ENST00000415793.1	CTD-2666L21.1	CTD-2666L21.1-003	ZNF136	NA	chr19:12295830-12300064	inter
CUST_44446_PI429285431	0.9143022	A	0.90619713	A	1.00563381701094	0	lncRNA	49055-1_{1..3000}	"gi|359279884|ref|NR_045579.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|359279884|ref|NR_045579.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 8, non-coding RNA"	Chr4	159442866	159445865	+	59350	NR_045579.1	NA	NA	NA	NA	NA	inter
CUST_19627_PI429285431	1.5702665	A	1.7530849	A	0.880980261003363	0	lncRNA	21283-1_{1..386}	lnc-C11orf41-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf41-2:1	chr11	 33796994	 33797379	+	lnc-C11orf41-2	lnc-C11orf41-2:1	ENSG00000254508.1	RP11-646J21.5	FBXO3	NA	chr11:33786994-33796071	inter
CUST_35054_PI429285431	0.94542783	A	1.275919	A	0.795265686991738	0	lncRNA	36464-1_{1..1656}	n342001|BC042026|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4482|NULL|-1.2869700|-0.4330168	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342001|BC042026|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4482|NULL|-1.2869700|-0.4330168	chr6	 76001573	 76003228	-	NA	NA	NA	NA	TMEM30A	NA	chr6:75991573-75994632	inter
CUST_6848_PI429285431	2.8122127	A	2.8086193	A	1.00249385958604	0	lncRNA	6796-1_{1..1778}	"transcript_id ""ENST00000334165.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000334165.4"" | genecode_v17"	chr21	 33944548	 33946325	-	ENSG00000186842.4	ENST00000334165.4	LINC00846	LINC00846-001	TCP10L	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90chr21:33947151-33957845"	NA	inner
LNCA_21_P0013046	7.447147	P	7.808807	P	0.778268569530449	0	lncRNA	TCONS_l2_00024519	NA	NA	NA	NA	XLOC_l2_012802	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012802), lincRNA [TCONS_l2_00024519]"	chr6:166731302-166731361	hs|6q27	Agilent_HUMAN_G3V2	TCONS_l2_00024519	TCONS_l2_00024519	chr6	166731302	166731361	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38808_PI429285431	0.9102485	A	1.1758838	A	0.831832351345003	0	lncRNA	39802-1_{1..3000}	n384558|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003iwb.1||-1.2145300|-0.2927861	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384558|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003iwb.1||-1.2145300|-0.2927861	chr4	184940455	184943454	+	NA	NA	NA	NA	STOX2	NA	chr4:184930455-184938875	inter
CUST_41177_PI429285431	1.4469262	A	1.5542017	A	0.928339557755587	0	lncRNA	42012-1_{1..61}	ENST00000410899 ncrna:miRNA chromosome:GRCh37:1:236016300:236016360:-1 gene:ENSG00000222831 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410899 ncrna:miRNA chromosome:GRCh37:1:236016300:236016360:-1 gene:ENSG00000222831 gene_biotype:miRNA transcript_biotype:miRNA	chr1	236016300	236016360	-	ENSG00000222831	ENST00000410899	NA	NA	LYST	NA	chr1:236006300-236026360	inner
CUST_34234_PI429285431	0.9044746	A	0.905929	A	0.998992394716052	0	lncRNA	35742-2_{3001..3411}	n341092|BC040571|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3558|NULL|-1.2811300|-0.4407345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341092|BC040571|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3558|NULL|-1.2811300|-0.4407345	chr11	 89959320	 89959730	+	NA	NA	NA	NA	CHORDC1	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30chr11:89946320-89956532"	NA	inner
CUST_8603_PI429285431	4.3309045	P	4.2023883	P	1.09316880774799	0	lncRNA	10158-1_{1..1445}	lnc-PRKD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-PRKD1-1:1	chr14	 30766181	 30767625	-	lnc-PRKD1-1	lnc-PRKD1-1:1	ENSG00000248975	ENST00000508469	NA	NA	NA	inter
CUST_29632_PI429285431	2.4168923	A	1.2334987	A	2.27110372849808	0	lncRNA	31393-1_{1..928}	n333193|AF439152|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079665|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079665|4.0850400|-0.2476181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333193|AF439152|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079665|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079665|4.0850400|-0.2476181	chr5	127487041	127487968	+	NA	NA	NA	NA	SLC12A2	NA	chr5:127477041-127525380	inter
CUST_15146_PI429285431	0.9081933	A	0.90535945	A	1.00196620558981	0	lncRNA	16810-1_{1..3000}	lnc-TSHZ2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSHZ2-5:2	chr20	 51263029	 51266028	+	lnc-TSHZ2-5	lnc-TSHZ2-5:2	XLOC_013566	linc-TSHZ2-2	NA	NA	NA	inter
CUST_32986_PI429285431	0.9208023	A	0.93280035	A	0.991718071180228	0	lncRNA	34602-1_{1..1728}	n339667|BC037882|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2111|NULL|-1.0900500|-0.2779352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339667|BC037882|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2111|NULL|-1.0900500|-0.2779352	chr3	160471217	160472944	-	NA	NA	NA	NA	PPM1L	NA	chr3:160473996-160482930	inter
CUST_9767_PI429285431	4.318416	P	4.0052567	P	1.242425460775	0	lncRNA	11284-1_{1..358}	lnc-BAI3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BAI3-4:1	chr6	 68095954	 68096311	+	lnc-BAI3-4	lnc-BAI3-4:1	XLOC_005337	linc-BAI3-4	NA	NA	NA	inter
CUST_31851_PI429285431	6.6628766	P	6.908359	P	0.843533693064944	0	lncRNA	33584-1_{1..2186}	n338399|AK124866|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|795|NULL|-1.2223400|-0.4302734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338399|AK124866|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|795|NULL|-1.2223400|-0.4302734	chr14	 74468336	 74470521	-	NA	NA	NA	NA	ENTPD5	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20chr14:74458336-74480121"	NA	inner
CUST_12765_PI429285431	0.9533308	A	0.9276909	A	1.01793109011172	0	lncRNA	14388-1_{1..439}	lnc-SPAM1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPAM1-3:2	chr7	123993205	123993643	+	lnc-SPAM1-3	lnc-SPAM1-3:2	XLOC_006228	linc-ARF5-10	NA	NA	NA	inter
CUST_3375_PI429285431	1.820247	A	2.9195883	A	0.466729544659101	0	lncRNA	3349-1_{1..217}	"transcript_id ""ENST00000445051.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445051.1"" | genecode_v17"	chr9	 20683388	 20683604	-	ENSG00000227071.1	ENST00000445051.1	RP11-4E23.2	RP11-4E23.2-002	NA	NA	NA	inner
CUST_22487_PI429285431	4.723275	P	4.971996	P	0.841642230109067	0	lncRNA	24074-1_{1..899}	lnc-TLCD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TLCD1-1:1	chr17	 27049428	 27050326	-	lnc-TLCD1-1	lnc-TLCD1-1:1	ENSG00000264577.1	AC010761.8	RPL23A	"hg19_refFlat_RPL23A:range=chr17:27047024-270508995'pad=0,hg19_refFlat_RPL23A:range=chr17:27047024-270508995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00chr17:27047000-27051374"	NA	inner
LNCA_21_P0008086	3.119552	P	3.6256096	P	0.70414399975016	0	lncRNA	TCONS_00021849	NA	NA	NA	NA	XLOC_010445	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010445), lincRNA [TCONS_00021849]"	chr13:79999167-79999226	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00021849	TCONS_00021849	chr13	 79999167	 79999226	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50224_PI429285431	3.9165409	P	4.5372787	P	0.650338257084268	0	lncRNA	53948-1_{1..597}	hg19_lincRNAsTranscripts_TCONS_l2_00029326 range=chr9:67254492-67289454 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029326 range=chr9:67254492-67289454 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 67254492	 67255088	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36047_PI429285431	3.671781	P	4.878377	P	0.433289745973432	0	lncRNA	37363-3_{6001..9000}	n344644|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_192|NULL|-1.3349100|-0.2234839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344644|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_192|NULL|-1.3349100|-0.2234839	chr5	173090842	173093841	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50802_PI429285431	2.4723983	A	2.6441064	A	0.887790945540787	0	lncRNA	54455-1_{1..324}	hg19_lincRNAsTranscripts_TCONS_l2_00004957 range=chr11:32133596-32174461 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004957 range=chr11:32133596-32174461 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	 32133596	 32133919	-	NA	NA	NA	NA	RCN1	NA	chr11:32123596-32127272	inter
CUST_47004_PI429285431	0.9140375	A	0.9141382	A	0.999930202514875	0	lncRNA	51102-2_{3001..6000}	"gi|402534576|ref|NR_073130.1| Homo sapiens cadherin 19, type 2 (CDH19), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402534576|ref|NR_073130.1| Homo sapiens cadherin 19, type 2 (CDH19), transcript variant 3, non-coding RNA"	Chr18	 64171424	 64174423	-	28513	NR_073130.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014354	1.0329522	A	1.0147929	A	1.01266661815028	0	lncRNA	XR_109422	XR_109422	XR_109422	NA	Hs.231295	LOC100507049	uncharacterized LOC100507049	NA	THC2624593	NA	"PREDICTED: Homo sapiens hypothetical LOC100507049 (LOC100507049), miscRNA [XR_109422]"	chr17:65671352-65671293	hs|17q24.2	Agilent_HUMAN_G3V2	XR_109422	XR_109422	chr17	 65671293	 65671352	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_650_PI429285431	13.711077	P	13.563118	P	1.10800085910295	0	lncRNA	642-1_{1..368}	"transcript_id ""ENST00000449405.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449405.1"" | genecode_v17"	chr2	   897183	   897550	-	ENSG00000228799.1	ENST00000449405.1	AC113607.2	AC113607.2-002	NA	NA	NA	inter
CUST_2453_PI429285431	3.8179336	P	3.6543818	P	1.12004119854483	0	lncRNA	2445-1_{1..806}	"transcript_id ""ENST00000507681.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507681.1"" | genecode_v17"	chr5	179868559	179869364	+	ENSG00000250509.1	ENST00000507681.1	CTC-573N18.1	CTC-573N18.1-001	NA	NA	NA	inter
CUST_41767_PI429285431	1.5908232	A	1.7528106	A	0.893792968401657	0	lncRNA	43329-1_{1..78}	ENST00000385073 ncrna:miRNA chromosome:GRCh37:19:13947254:13947331:-1 gene:ENSG00000207808 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385073 ncrna:miRNA chromosome:GRCh37:19:13947254:13947331:-1 gene:ENSG00000207808 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 13947254	 13947331	-	ENSG00000207808	ENST00000385073	NA	NA	ZSWIM4	NA	chr19:13937254-13943044	inter
CUST_45758_PI429285431	1.0901542	A	1.0605513	A	1.0207311320739	0	lncRNA	50104-1_{1..3000}	"gi|354548827|ref|NR_045405.1| Homo sapiens resistance to inhibitors of cholinesterase 3 homolog (C. elegans) (RIC3), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|354548827|ref|NR_045405.1| Homo sapiens resistance to inhibitors of cholinesterase 3 homolog (C. elegans) (RIC3), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NR_045405.1	NA	NA	NA	NA	NA	Unknown
CUST_12507_PI429285431	1.3882798	A	0.9186262	A	1.38477693468628	0	lncRNA	14118-1_{1..2166}	lnc-RP11-204N11.1.1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-204N11.1.1-3:4	chr14	 98444314	 98446479	-	lnc-RP11-204N11.1.1-3	lnc-RP11-204N11.1.1-3:4	XLOC_011117	linc-ATG2B-2	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40"	NA	inter
CUST_50783_PI429285431	6.844145	P	6.5165024	P	1.25496106026028	0	lncRNA	54439-1_{1..504}	hg19_lincRNAsTranscripts_TCONS_l2_00004338 range=chr11:1799971-1825792 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004338 range=chr11:1799971-1825792 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	  1799971	  1800474	+	NA	NA	NA	NA	NA	"hg19_refFlat_ACTB:range=chr7:5567379-55692885'pad=0,hg19_refFlat_ACTB:range=chr7:5567379-55692885'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20"	NA	inter
CUST_51069_PI429285431	2.0297673	A	2.7421963	A	0.610291752908596	0	lncRNA	54706-1_{1..713}	hg19_lincRNAsTranscripts_TCONS_l2_00006791 range=chr13:37363457-37369297 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006791 range=chr13:37363457-37369297 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 37363457	 37364169	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47158_PI429285431	9.204321	P	8.816597	P	1.30832775313239	0	lncRNA	51236-2_{3001..3453}	"gi|239049633|ref|NR_027763.1| Homo sapiens glycogen synthase 1 (muscle) (GYS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239049633|ref|NR_027763.1| Homo sapiens glycogen synthase 1 (muscle) (GYS1), transcript variant 3, non-coding RNA"	Chr19	 49474382	 49474834	-	2997	NR_027763.1	NA	NA	NA	NA	NA	inter
CUST_24972_PI429285431	1.8593605	A	2.2167206	A	0.780591630823233	0	lncRNA	26512-1_{1..2698}	lnc-ABCF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ABCF2-1:1	chr7	150902530	150905227	-	lnc-ABCF2-1	lnc-ABCF2-1:1	ENSG00000183016.8	IQCA1P1	ABCF2	NA	chr7:150904923-150912581	inter
CUST_17815_PI429285431	0.9168759	A	0.9074712	A	1.00654013518024	0	lncRNA	19551-1_{1..470}	lnc-FNDC3B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-FNDC3B-1:1	chr3	171612649	171613118	+	lnc-FNDC3B-1	lnc-FNDC3B-1:1	XLOC_002922	linc-FNDC3B	NA	NA	NA	inter
CUST_27472_PI429285431	0.9112334	A	0.9138984	A	0.998154467856446	0	lncRNA	29043-1_{1..219}	n324649|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317554|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317554|-1.1424600|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324649|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317554|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317554|-1.1424600|-1.0000000	chr22	 46635083	 46635301	+	NA	NA	NA	NA	PPARA	NA	chr22:46625083-46639653	inner
CUST_6320_PI429285431	8.479613	P	9.012267	P	0.691281872773391	0	lncRNA	6243-1_{1..556}	"transcript_id ""ENST00000587473.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587473.1"" | genecode_v17"	chr19	  6210700	  6211255	-	ENSG00000267427.1	ENST00000587473.1	CTC-503J8.6	CTC-503J8.6-002	MLLT1	NA	chr19:6210392-6221487	inner
CUST_9936_PI429285431	1.5276798	A	1.2958335	A	1.17433685455041	0	lncRNA	11459-1_{1..315}	lnc-SMYD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMYD1-1:1	chr2	 88047115	 88047429	+	lnc-SMYD1-1	lnc-SMYD1-1:1	XLOC_001560	linc-PLGLB2	RGPD2	NA	chr2:88056717-88057354	inter
CUST_31562_PI429285431	9.092905	P	9.142899	P	0.965940346149457	0	lncRNA	33320-1_{1..483}	n338055|AF147302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|442|NULL|-1.2850100|-0.3495964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338055|AF147302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|442|NULL|-1.2850100|-0.3495964	chr15	 78792407	 78792889	-	NA	NA	NA	NA	IREB2	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20chr15:78782407-78793798"	NA	inner
CUST_13862_PI429285431	2.5261922	A	2.5052104	A	1.01464974641082	0	lncRNA	15506-1_{1..395}	lnc-CTSO-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTSO-1:3	chr4	157064904	157065298	-	lnc-CTSO-1	lnc-CTSO-1:3	XLOC_004134	linc-CTSO-1	NA	NA	NA	inter
CUST_41603_PI429285431	5.1627536	P	5.9921474	P	0.562765658821802	0	lncRNA	42955-1_{1..98}	ENST00000362114 ncrna:miRNA chromosome:GRCh37:14:100774196:100774293:1 gene:ENSG00000198984 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362114 ncrna:miRNA chromosome:GRCh37:14:100774196:100774293:1 gene:ENSG00000198984 gene_biotype:miRNA transcript_biotype:miRNA	chr14	100774196	100774293	+	ENSG00000198984	ENST00000362114	NA	NA	SLC25A29	NA	chr14:100764196-100772860	inter
CUST_30242_PI429285431	11.537985	P	11.243622	P	1.22634338447198	0	lncRNA	32017-1_{1..354}	n335112|AL365519|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250558|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250558|0.0582283|-0.0670621	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335112|AL365519|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250558|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250558|0.0582283|-0.0670621	chr16	  2070201	  2070554	+	NA	NA	NA	NA	SLC9A3R2	NA	chr16:2076888-2080776	inner
CUST_37967_PI429285431	5.141673	P	4.227962	P	1.88388513101512	0	lncRNA	39055-1_{1..383}	n346516|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2066|NULL|-1.3608800|-0.2772202	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346516|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2066|NULL|-1.3608800|-0.2772202	chr1	224170583	224170965	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
CUST_26049_PI429285431	3.160228	P	2.9227347	A	1.17894245410982	0	lncRNA	27564-1_{1..2163}	lnc-CCDC64B-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC64B-1:8	chr16	  3105737	  3107899	-	lnc-CCDC64B-1	lnc-CCDC64B-1:8	ENSG00000261971.1	RP11-473M20.7	IL32	NA	chr16:3115313-3116233	inner
CUST_35323_PI429285431	0.9053999	A	0.90096724	A	1.00307721070367	0	lncRNA	36732-1_{1..649}	n342360|BC033346|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4852|NULL|-1.0069800|-0.1959199	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342360|BC033346|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4852|NULL|-1.0069800|-0.1959199	chr1	226374532	226375180	+	NA	NA	NA	NA	ACBD3	"hg19_refFlat_RPL34:range=chr4:109543116-1095463685'pad=0,hg19_refFlat_RPL34:range=chr4:109543116-1095463685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30chr1:226364532-226374423"	NA	inter
CUST_11341_PI429285431	2.5823743	A	3.5328307	P	0.517468733562204	0	lncRNA	12904-1_{1..1734}	lnc-GPC5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPC5-2:2	chr13	 91793334	 91795067	+	lnc-GPC5-2	lnc-GPC5-2:2	XLOC_010470	linc-GPC5-1	NA	NA	NA	inter
CUST_24474_PI429285431	5.5573163	P	6.5417595	P	0.505420749889106	0	lncRNA	26026-1_{1..579}	lnc-PRKD1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRKD1-2:5	chr14	 30943207	 30943785	-	lnc-PRKD1-2	lnc-PRKD1-2:5	ENSG00000257636.1	RP11-1103G16.1	NA	NA	NA	inter
CUST_8757_PI429285431	5.01998	P	5.148706	P	0.914638783331739	0	lncRNA	10299-1_{1..1041}	lnc-CRYBA4-1:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:15	chr22	 27061495	 27062535	+	lnc-CRYBA4-1	lnc-CRYBA4-1:15	ENSG00000225783	XLOC_014192	NA	NA	NA	inter
CUST_24290_PI429285431	1.2475121	A	1.0788486	A	1.12401672301537	0	lncRNA	25841-1_{1..1063}	lnc-OR10J3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OR10J3-1:1	chr1	159438632	159439694	-	lnc-OR10J3-1	lnc-OR10J3-1:1	ENSG00000228560.1	RP11-550P17.5	NA	NA	NA	inter
LNCA_21_P0013132	3.7176356	P	2.6520827	A	2.09297183868318	0	lncRNA	XR_108662	XR_108662	XR_108662	NA	Hs.544586	FLJ37798	uncharacterized LOC401264	NA	THC2710571	NA	"PREDICTED: Homo sapiens hypothetical LOC401264 (FLJ37798), miscRNA [XR_108662]"	chr6:52443114-52443173	hs|6p12.2	Agilent_HUMAN_G3V2	XR_108662	XR_108662	chr6	 52443114	 52443173	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39704_PI429285431	6.6305156	P	5.8142557	P	1.76083521117359	0	lncRNA	40641-1_{1..3000}	n405569|NR_002726|lncRNA|Homosapiens||RefGeneNoncode|NR_002726||5.0340800|-0.2734361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405569|NR_002726|lncRNA|Homosapiens||RefGeneNoncode|NR_002726||5.0340800|-0.2734361	chr10	 44282859	 44285858	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33333_PI429285431	0.9262324	A	0.9296257	A	0.997650707589303	0	lncRNA	34914-1_{1..746}	n340050|AL080225|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2505|NULL|-0.8324710|-0.3151475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n340050|AL080225|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2505|NULL|-0.8324710|-0.3151475	chr4	 53656160	 53656905	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31595_PI429285431	0.9235563	A	0.9141016	A	1.00657501980758	0	lncRNA	33351-2_{3001..5072}	n338102|AK126296|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|490|NULL|0.4416620|-0.3569114	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338102|AK126296|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|490|NULL|0.4416620|-0.3569114	chr1	100499121	100501192	+	NA	NA	NA	NA	HIAT1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40chr1:100503789-100511188"	NA	inter
LNCA_21_P0002456	0.9948711	A	0.92670894	A	1.0483803076241	0	lncRNA	TCONS_00004299	NA	NA	NA	NA	XLOC_002148	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002148), lincRNA [TCONS_00004299]"	chr2:69135106-69135047	hs|2p13.3	Agilent_HUMAN_G3V2	TCONS_00004299	TCONS_00004299	chr2	 69135047	 69135106	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20719_PI429285431	1.5408034	A	2.1311028	A	0.664205051421784	0	lncRNA	22354-1_{1..622}	lnc-KLF9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLF9-2:1	chr9	 72728671	 72729292	-	lnc-KLF9-2	lnc-KLF9-2:1	ENSG00000237778.1	RP11-195E11.2	MAMDC2	NA	chr9:72718671-72738782	inner
CUST_10182_PI429285431	1.2375721	A	1.0050504	A	1.17488675094196	0	lncRNA	11708-1_{1..511}	lnc-NLGN4Y-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NLGN4Y-1:1	chrY	 17572579	 17573089	+	lnc-NLGN4Y-1	lnc-NLGN4Y-1:1	XLOC_008297	linc-CDY2A	NA	NA	NA	inter
CUST_39481_PI429285431	1.5934241	A	0.9075601	A	1.60866508906869	0	lncRNA	40427-1_{1..1951}	n387128|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010yug.1||5.3993100|-0.2340422	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n387128|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010yug.1||5.3993100|-0.2340422	chr2	 96592961	 96594911	-	NA	NA	NA	NA	LOC400986	NA	chr2:96582961-96657980	inter
LNCA_21_P0012702	0.98811084	A	0.9239654	A	1.04546548965509	0	lncRNA	TCONS_l2_00021478	NA	NA	NA	NA	XLOC_l2_011413	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011413), lincRNA [TCONS_l2_00021478]"	chr4:188486936-188486877	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_l2_00021478	TCONS_l2_00021478	chr4	188486877	188486936	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16306_PI429285431	6.618214	P	6.7256527	P	0.928234548420552	0	lncRNA	18012-1_{1..1817}	lnc-DLGAP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLGAP2-2:1	chr8	  1322434	  1324250	+	lnc-DLGAP2-2	lnc-DLGAP2-2:1	XLOC_006686	linc-DLGAP2-2	NA	NA	NA	inter
CUST_1166_PI429285431	5.7546577	P	6.213879	P	0.727378758107011	0	lncRNA	1155-1_{1..306}	"transcript_id ""ENST00000458254.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458254.1"" | genecode_v17"	chr2	176769099	176769404	-	ENSG00000229779.1	ENST00000458254.1	AC016751.2	AC016751.2-001	NA	NA	NA	inter
CUST_32480_PI429285431	1.6203582	A	1.3739814	A	1.18622427447068	0	lncRNA	34149-1_{1..2722}	n339083|AK094972|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1513|NULL|0.5537890|-0.2676219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339083|AK094972|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1513|NULL|0.5537890|-0.2676219	chr16	 13002792	 13005513	+	NA	NA	NA	NA	SHISA9	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00chr16:12992792-13015504"	NA	inner
CUST_4565_PI429285431	0.98988104	A	0.97191846	A	1.01252854448243	0	lncRNA	4514-1_{1..435}	"transcript_id ""ENST00000439079.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439079.1"" | genecode_v17"	chr13	 26626414	 26626848	-	ENSG00000231983.1	ENST00000439079.1	LINC00415	LINC00415-001	SHISA2	NA	chr13:26618735-26625198	inter
CUST_34767_PI429285431	1.0315645	A	1.3042228	A	0.827792854267733	0	lncRNA	36207-1_{1..729}	n341676|CR598614|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4147|NULL|-0.3395540|-0.1155237	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341676|CR598614|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4147|NULL|-0.3395540|-0.1155237	chr9	 33785947	 33786675	-	NA	NA	NA	NA	UBE2R2	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_PRSS3:range=chr9:33795572-337991785'pad=0,hg19_refFlat_PRSS3:range=chr9:33795572-337991785'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PRSS3:range=chr9:33794790-337991785'pad=0,hg19_refFlat_PRSS3:range=chr9:33794790-337991785'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_PRSS1:range=chr7:142457336-1424608715'pad=0,hg19_refFlat_PRSS1:range=chr7:142457336-1424608715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_PRSS3:range=chr9:33750832-337991785'pad=0,hg19_refFlat_PRSS3:range=chr9:33750832-337991785'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PRSS3:range=chr9:33750515-337991785'pad=0,hg19_refFlat_PRSS3:range=chr9:33750515-337991785'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50chr9:33817182-33828793"	NA	inner
CUST_42443_PI429285431	4.5361333	P	4.964548	P	0.74307786516655	0	lncRNA	45168-1_{1..92}	ENST00000365628 ncrna:snoRNA chromosome:GRCh37:1:215803368:215803459:-1 gene:ENSG00000202498 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365628 ncrna:snoRNA chromosome:GRCh37:1:215803368:215803459:-1 gene:ENSG00000202498 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	215803368	215803459	-	ENSG00000202498	ENST00000365628	NA	NA	USH2A	NA	chr1:215796236-215813459	inner
CUST_40235_PI429285431	11.371616	P	11.455763	P	0.943342126382778	0	lncRNA	41054-1_{1..2865}	n408115|NR_028048|lncRNA|Homosapiens||RefGeneNoncode|NR_028048||7.2982300|-0.0620811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408115|NR_028048|lncRNA|Homosapiens||RefGeneNoncode|NR_028048||7.2982300|-0.0620811	chr9	131857072	131859936	-	NA	NA	NA	NA	CRAT	NA	chr9:131857073-131873070	inner
LNCA_21_P0001760	1.5911045	A	1.5798742	A	1.00781462682906	0	lncRNA	TCONS_00002621	NA	NA	NA	NA	XLOC_001254	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001254), lincRNA [TCONS_00002621]"	chr1:231014601-231014542	hs|1q42.2	Agilent_HUMAN_G3V2	TCONS_00002621	TCONS_00002621	chr1	231014542	231014601	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23068_PI429285431	1.2159296	A	1.0222805	A	1.14365277403136	0	lncRNA	24639-1_{1..546}	lnc-HMGB4-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMGB4-1:4	chr1	 34339203	 34339748	+	lnc-HMGB4-1	lnc-HMGB4-1:4	ENSG00000231163.1	AL121980.1	CSMD2	NA	chr1:34329203-34349412	inner
LNCA_21_P0003483	0.9573084	A	0.9176055	A	1.02790212483423	0	lncRNA	TCONS_00007790	NA	NA	NA	NA	XLOC_004004	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004004), lincRNA [TCONS_00007790]"	chr4:85292617-85292558	hs|4q21.23	Agilent_HUMAN_G3V2	TCONS_00007790	TCONS_00007790	chr4	 85292558	 85292617	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24529_PI429285431	0.90465504	A	0.895411	A	1.00642805207901	0	lncRNA	26080-1_{1..491}	lnc-HMG20A-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMG20A-3:3	chr15	 77943677	 77944167	+	lnc-HMG20A-3	lnc-HMG20A-3:3	ENSG00000259666.1	RP11-307C19.3	LOC253044	NA	chr15:77934106-77941582	inter
LNCA_21_P0012803	4.939224	P	4.8030825	P	1.09896199884234	0	lncRNA	ENST00000506645	NA	NA	NA	NA	XLOC_l2_011291	NA	ENST00000506645	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011291), lincRNA [TCONS_l2_00022009]"	chr4:142240670-142240611	hs|4q31.21	Agilent_HUMAN_G3V2	ENST00000506645	ENST00000506645	chr4	142240611	142240670	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30848_PI429285431	2.9586425	A	2.9457583	A	1.00897064410914	0	lncRNA	32636-1_{1..351}	n336826|AF467444|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330092|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330092|0.1036690|-0.3041553	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336826|AF467444|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330092|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330092|0.1036690|-0.3041553	chr9	 90342122	 90342472	+	NA	NA	NA	NA	CTSL1	NA	chr9:90340974-90346384	inner
CUST_36424_PI429285431	1.5733438	A	1.318924	A	1.1928559228526	0	lncRNA	37639-2_{3001..3362}	n344938|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_487|NULL|-1.5632600|-0.2899182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344938|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_487|NULL|-1.5632600|-0.2899182	chr7	 30225186	 30225547	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30"	NA	inter
CUST_11558_PI429285431	0.90192986	A	0.8928437	A	1.00631792058037	0	lncRNA	13132-1_{1..533}	lnc-CST9LP1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CST9LP1-2:2	chr20	 23499254	 23499786	-	lnc-CST9LP1-2	lnc-CST9LP1-2:2	XLOC_013694	linc-CST11	NA	NA	NA	inter
CUST_46494_PI429285431	1.052426	A	1.9632195	A	0.531892463368971	0	lncRNA	50688-1_{1..3000}	"gi|354721171|ref|NR_033671.2| Homo sapiens NADPH oxidase, EF-hand calcium binding domain 5 (NOX5), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|354721171|ref|NR_033671.2| Homo sapiens NADPH oxidase, EF-hand calcium binding domain 5 (NOX5), transcript variant 4, non-coding RNA"	Chr15	 69222839	 69225838	+	79400	NR_033671.2	NA	NA	NA	NA	NA	inter
CUST_6910_PI429285431	4.627625	P	5.3790803	P	0.594004061255836	0	lncRNA	6860-1_{1..624}	"transcript_id ""ENST00000453395.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453395.1"" | genecode_v17"	chr22	 16199666	 16200289	-	ENSG00000225255.2	ENST00000453395.1	LA16c-83F12.6	LA16c-83F12.6-002	NA	NA	NA	inter
CUST_6415_PI429285431	5.943981	P	4.946794	P	1.99610415330223	0	lncRNA	6354-1_{1..578}	"transcript_id ""ENST00000591458.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591458.1"" | genecode_v17"	chr19	 28282611	 28283188	-	ENSG00000261824.2	ENST00000591458.1	LINC00662	LINC00662-003	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.90"	NA	inter
CUST_33223_PI429285431	4.1663604	P	4.386769	P	0.85832230801913	0	lncRNA	34812-1_{1..725}	n339922|BC019842|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2371|NULL|-1.0949000|-0.2463766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339922|BC019842|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2371|NULL|-1.0949000|-0.2463766	chr18	 71589173	 71589897	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18477_PI429285431	2.528823	A	3.0829997	A	0.681045598355228	0	lncRNA	20197-1_{1..465}	lnc-DLK1-4:26	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DLK1-4:26	chr14	101327028	101327492	+	lnc-DLK1-4	lnc-DLK1-4:26	ENSG00000214548	MEG3	NA	NA	NA	inter
CUST_47091_PI429285431	0.92752683	A	0.91110563	A	1.01144733343175	0	lncRNA	51174-1_{1..1138}	"gi|397139703|ref|XR_109588.3| PREDICTED: Homo sapiens uncharacterized LOC100505851 (LOC100505851), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139703|ref|XR_109588.3| PREDICTED: Homo sapiens uncharacterized LOC100505851 (LOC100505851), misc_RNA"	Chr19	 24132381	 24133518	-	100505851	XR_109588.4	NA	NA	NA	NA	NA	inter
CUST_46393_PI429285431	9.816215	P	9.69607	P	1.08684409175995	0	lncRNA	50610-1_{1..1595}	"gi|290543313|ref|NR_002766.2| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|290543313|ref|NR_002766.2| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 1, non-coding RNA"	Chr14	101292445	101294039	+	55384	NR_002766.2	NA	NA	NA	NA	NA	inter
CUST_26941_PI429285431	9.785353	P	9.974799	P	0.876942405654329	0	lncRNA	28462-1_{1..1287}	n324022|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053172|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053172|-0.0957109|-0.2240657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324022|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053172|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053172|-0.0957109|-0.2240657	chr9	 95978704	 95979990	-	NA	NA	NA	NA	WNK2	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0,hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.81;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.72;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.33;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50chr9:95968704-96016639"	NA	inner
CUST_19374_PI429285431	1.5454038	A	2.3620043	A	0.567778254087757	0	lncRNA	21036-1_{1..2102}	lnc-AL358813.2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AL358813.2-2:2	chr1	149640790	149642891	+	lnc-AL358813.2-2	lnc-AL358813.2-2:2	ENSG00000232151.3	RP11-277L2.2	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.60"	NA	inter
CUST_29684_PI429285431	9.798584	P	9.794552	P	1.00279867844085	0	lncRNA	31446-1_{1..350}	n333340|AY255590|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085527|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085527|0.6908190|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333340|AY255590|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085527|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085527|0.6908190|-1.0000000	chr14	 53019959	 53020308	+	NA	NA	NA	NA	GPR137C	NA	chr14:53019866-53030309	inner
CUST_5784_PI429285431	3.3185399	P	3.4035914	P	0.942750881864107	0	lncRNA	5707-1_{1..682}	"transcript_id ""ENST00000426869.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000426869.3"" | genecode_v17"	chr17	 21825297	 21825978	+	ENSG00000178130.8	ENST00000426869.3	FAM27L	FAM27L-001	NA	NA	NA	inter
CUST_244_PI429285431	5.2076187	P	5.7529216	P	0.685247516735988	0	lncRNA	236-1_{1..395}	"transcript_id ""ENST00000424592.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424592.1"" | genecode_v17"	chr1	 59304120	 59304514	-	ENSG00000231740.1	ENST00000424592.1	RP11-63G10.2	RP11-63G10.2-001	NA	NA	NA	inter
LNCA_21_P0006092	4.411256	P	4.884864	P	0.720161310366073	0	lncRNA	ENST00000443716	NA	NA	NA	NA	XLOC_007781	NA	ENST00000443716	NA	NA	"BROAD Institute lincRNA (XLOC_007781), lincRNA [TCONS_00015849]"	chr9:96192856-96192797	hs|9q22.31	Agilent_HUMAN_G3V2	ENST00000443716	ENST00000443716	chr9	 96192797	 96192856	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3081_PI429285431	2.8381293	P	3.1818988	P	0.787979771855799	0	lncRNA	3060-1_{1..735}	"transcript_id ""ENST00000521511.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521511.1"" | genecode_v17"	chr8	 38558144	 38558878	-	ENSG00000254321.1	ENST00000521511.1	RP11-495O10.1	RP11-495O10.1-001	NA	NA	NA	inter
CUST_33974_PI429285431	3.8411765	P	1.2399774	A	6.06790752895854	0	lncRNA	35511-1_{1..1681}	n340782|AK054573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3245|NULL|0.2472880|-0.2745037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340782|AK054573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3245|NULL|0.2472880|-0.2745037	chr17	 58741953	 58743633	+	NA	NA	NA	NA	PPM1D	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20chr17:58731953-58743641"	NA	inner
CUST_16835_PI429285431	4.8984375	P	5.5172873	P	0.651189887094725	0	lncRNA	18542-1_{1..551}	lnc-PARN-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PARN-1:2	chr16	 14512491	 14513041	-	lnc-PARN-1	lnc-PARN-1:2	XLOC_011883	linc-CPPED1-5	NA	"hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80"	NA	inter
CUST_24990_PI429285431	0.9271201	A	0.9308775	A	0.997398957372324	0	lncRNA	26530-1_{1..401}	lnc-DCT-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DCT-5:1	chr13	 92992650	 92993050	-	lnc-DCT-5	lnc-DCT-5:1	ENSG00000232885.1	GPC5-AS2	GPC5	NA	chr13:92982650-93002856	inner
CUST_42578_PI429285431	2.1298485	A	3.0621765	A	0.524012088873942	0	lncRNA	45416-1_{1..75}	ENST00000363219 ncrna:snoRNA chromosome:GRCh37:14:101459573:101459647:1 gene:ENSG00000200089 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363219 ncrna:snoRNA chromosome:GRCh37:14:101459573:101459647:1 gene:ENSG00000200089 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101459573	101459647	+	ENSG00000200089	ENST00000363219	NA	NA	NA	NA	NA	inter
CUST_33579_PI429285431	1.6534071	A	1.0178099	A	1.55358071776376	0	lncRNA	35144-1_{1..333}	n340331|AF009280|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2792|NULL|-0.8805140|-0.1446189	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340331|AF009280|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2792|NULL|-0.8805140|-0.1446189	chr5	  9188659	  9188991	+	NA	NA	NA	NA	SEMA5A	NA	chr5:9178659-9198992	inner
CUST_35155_PI429285431	0.9247029	A	0.9178629	A	1.00475238363943	0	lncRNA	36557-1_{1..919}	n342127|BC067461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4611|NULL|3.6776200|-0.1101629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342127|BC067461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4611|NULL|3.6776200|-0.1101629	chr6	132938290	132939208	-	NA	NA	NA	NA	TAAR2	NA	chr6:132938289-132945414	inner
CUST_21774_PI429285431	1.9070362	A	1.5686452	A	1.26434571569077	0	lncRNA	23384-1_{1..707}	lnc-FANCL-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FANCL-3:1	chr2	 59960353	 59961059	-	lnc-FANCL-3	lnc-FANCL-3:1	ENSG00000233891.3	AC007131.2	NA	NA	NA	inter
CUST_28866_PI429285431	0.9187383	A	1.4184997	A	0.707223735654049	0	lncRNA	30579-1_{1..549}	n326286|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086762|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086762|-1.1518200|-0.2972142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326286|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086762|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086762|-1.1518200|-0.2972142	chr1	191914646	191915194	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22767_PI429285431	0.9093817	A	1.1604522	A	0.840272689728464	0	lncRNA	24349-1_{1..630}	lnc-UEVLD-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-UEVLD-2:1	chr11	 18530031	 18530660	-	lnc-UEVLD-2	lnc-UEVLD-2:1	ENSG00000256588.1	RP11-613F22.8	TSG101	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50chr11:18520031-18540367"	NA	inner
CUST_4006_PI429285431	1.0955819	A	0.8970392	A	1.14753861376441	0	lncRNA	3967-1_{1..655}	"transcript_id ""ENST00000528507.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000528507.1"" | genecode_v17"	chr11	 69860964	 69861618	-	ENSG00000254605.1	ENST00000528507.1	RP11-626H12.2	RP11-626H12.2-001	LOC100127946	NA	chr11:69850964-69866574	inter
CUST_1216_PI429285431	2.8098118	A	3.4862115	P	0.62572484766057	0	lncRNA	1207-1_{1..326}	"transcript_id ""ENST00000456384.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456384.1"" | genecode_v17"	chr2	205340079	205340404	+	ENSG00000237843.1	ENST00000456384.1	AC016903.2	AC016903.2-001	NA	NA	NA	inter
CUST_36131_PI429285431	4.556864	P	4.502143	P	1.03865821977242	0	lncRNA	37417-1_{1..3000}	n344704|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_253|NULL|-1.5613800|-0.1050652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344704|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_253|NULL|-1.5613800|-0.1050652	chr21	 45225700	 45228699	-	NA	NA	NA	NA	RRP1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90chr21:45215700-45223983"	NA	inter
CUST_3257_PI429285431	0.93894535	A	1.2239093	A	0.820762117721828	0	lncRNA	3235-2_{3001..4597}	"transcript_id ""ENST00000562917.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562917.1"" | genecode_v17"	chr8	104479617	104481213	+	ENSG00000261670.1	ENST00000562917.1	RP11-1C8.5	RP11-1C8.5-001	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20"	NA	inter
CUST_36176_PI429285431	0.92081904	A	0.936748	A	0.989019615670589	0	lncRNA	37446-1_{1..879}	n344734|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_283|NULL|-1.3312400|-0.2195856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344734|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_283|NULL|-1.3312400|-0.2195856	chr2	224569311	224570189	-	NA	NA	NA	NA	NA	"hg19_refFlat_MLX:range=chr17:40719143-407236215'pad=0,hg19_refFlat_MLX:range=chr17:40719143-407236215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30"	NA	inter
CUST_23038_PI429285431	5.9029226	P	6.2926774	P	0.763259316772893	0	lncRNA	24609-1_{1..409}	lnc-TBCCD1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBCCD1-1:2	chr3	186383368	186383776	-	lnc-TBCCD1-1	lnc-TBCCD1-1:2	ENSG00000236524.1	RP11-134F2.2	HRG	NA	chr3:186383798-186393492	inter
LNCA_21_P0001184	0.9251889	A	0.9164442	A	1.00607977138972	0	lncRNA	ENST00000419446	NA	NA	NA	NA	XLOC_001067	NA	ENST00000419446	NA	NA	"BROAD Institute lincRNA (XLOC_001067), lincRNA [TCONS_00000652]"	chr1:161526144-161526085	hs|1q23.3	Agilent_HUMAN_G3V2	ENST00000419446	ENST00000419446	chr1	161526085	161526144	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014766	5.221158	P	5.250807	P	0.979658614305011	0	lncRNA	XR_132533	XR_132533	XR_132533	NA	NA	LOC100652957	uncharacterized LOC100652957	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652957 (LOC100652957), miscRNA [XR_132533]"	NA	NA	Agilent_HUMAN_G3V2	XR_132533	XR_132533	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25236_PI429285431	3.7285206	P	3.9740858	P	0.843485281873691	0	lncRNA	26767-1_{1..1004}	lnc-LPO-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LPO-1:5	chr17	 56429360	 56430363	+	lnc-LPO-1	lnc-LPO-1:5	ENSG00000265148.1	RP5-1171I10.4	RNF43	"hg19_refFlat_SUPT4H1:range=chr17:56423607-564294965'pad=0,hg19_refFlat_SUPT4H1:range=chr17:56423607-564294965'pad=0 3'pad=0 strand=- repeatMasking=none,-97.40chr17:56431037-56439852"	NA	inner
CUST_3210_PI429285431	4.6600833	P	4.38429	P	1.21065961605677	0	lncRNA	3188-1_{1..459}	"transcript_id ""ENST00000520988.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520988.1"" | genecode_v17"	chr8	 83020800	 83021258	-	ENSG00000254123.1	ENST00000520988.1	RP11-99H20.1	RP11-99H20.1-002	NA	NA	NA	inter
CUST_27619_PI429285431	5.7046294	P	5.9169855	P	0.863126487017953	0	lncRNA	29197-1_{1..327}	n324823|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171972|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171972|-1.0276500|-0.4377057	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324823|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171972|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171972|-1.0276500|-0.4377057	chr21	 29476218	 29476544	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004675	0.927162	A	1.0731056	A	0.90378805829981	0	lncRNA	ENST00000416104	NA	AY927443	NA	Hs.520310	XLOC_005421	NA	ENST00000416104	NA	NA	"BROAD Institute lincRNA (XLOC_005421), lincRNA [TCONS_00011351]"	chr6:109089540-109089599	hs|6q21	Agilent_HUMAN_G3V2	ENST00000416104	ENST00000416104	chr6	109089540	109089599	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33159_PI429285431	1.5541215	A	0.89969915	A	1.57398560867324	0	lncRNA	34754-1_{1..2077}	n339851|BC031271|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2299|NULL|-1.0921400|-0.3362286	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n339851|BC031271|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2299|NULL|-1.0921400|-0.3362286	chr18	 42256895	 42258971	-	NA	NA	NA	NA	SETBP1	NA	chr18:42260138-42269682	inter
CUST_42916_PI429285431	7.9904327	P	7.927403	P	1.04465726844971	0	lncRNA	46018-1_{1..71}	ENST00000365633 ncrna:snoRNA chromosome:GRCh37:19:49994161:49994231:1 gene:ENSG00000202503 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365633 ncrna:snoRNA chromosome:GRCh37:19:49994161:49994231:1 gene:ENSG00000202503 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	 49994161	 49994231	+	ENSG00000202503	ENST00000365633	NA	NA	FLT3LG	NA	chr19:49984161-49989488	inter
CUST_2304_PI429285431	0.92067116	A	1.5246227	A	0.657949362604766	0	lncRNA	2296-1_{1..600}	"transcript_id ""ENST00000509496.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509496.1"" | genecode_v17"	chr5	108803054	108803653	+	ENSG00000251367.1	ENST00000509496.1	RP11-231G15.2	RP11-231G15.2-001	NA	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60"	NA	inter
CUST_12881_PI429285431	0.92110974	A	1.0227858	A	0.931949664017995	0	lncRNA	14509-1_{1..548}	lnc-TAOK3-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TAOK3-3:2	chr12	119199397	119199944	-	lnc-TAOK3-3	lnc-TAOK3-3:2	XLOC_010214	linc-TAOK3-3	NA	NA	NA	inter
CUST_6923_PI429285431	1.0193897	A	1.6544495	A	0.643914123831629	0	lncRNA	6875-1_{1..2379}	"transcript_id ""ENST00000443243.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000443243.1"" | genecode_v17"	chr22	 18512151	 18514529	+	ENSG00000235295.1	ENST00000443243.1	XXbac-B476C20.17	XXbac-B476C20.17-001	MICAL3	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr22:18502151-18507325"	NA	inter
LNCA_21_P0007260	0.9301373	A	0.9253008	A	1.00335803193758	0	lncRNA	TCONS_00019439	NA	NA	NA	NA	XLOC_009249	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009249), lincRNA [TCONS_00019439]"	chr11:91589930-91589989	hs|11q14.3	Agilent_HUMAN_G3V2	TCONS_00019439	TCONS_00019439	chr11	 91589930	 91589989	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10943_PI429285431	0.9161268	A	1.168523	A	0.83950091341889	0	lncRNA	12484-1_{1..716}	lnc-ZWINT-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZWINT-3:1	chr10	 58982372	 58983087	-	lnc-ZWINT-3	lnc-ZWINT-3:1	XLOC_008830	linc-ZWINT-2	NA	NA	NA	inter
CUST_33120_PI429285431	0.9102696	A	0.91453755	A	0.997046054000138	0	lncRNA	34718-2_{3001..4247}	n339807|BX648566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2254|NULL|-1.0235800|-0.4617904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339807|BX648566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2254|NULL|-1.0235800|-0.4617904	chr18	 19408447	 19409693	-	NA	NA	NA	NA	MIB1	NA	chr18:19395447-19421367	inner
LNCA_21_P0003345	0.9657044	A	0.9304359	A	1.02474752106641	0	lncRNA	ENST00000511520	NA	NA	NA	NA	XLOC_003488	NA	ENST00000511520	NA	NA	"BROAD Institute lincRNA (XLOC_003488), lincRNA [TCONS_00007497]"	chr4:28754681-28754792	hs|4p15.1	Agilent_HUMAN_G3V2	ENST00000511520	ENST00000511520	chr4	 28754681	 28754792	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25909_PI429285431	0.9109192	A	0.9089894	A	1.00133853046235	0	lncRNA	27428-1_{1..556}	lnc-FANCL-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FANCL-3:2	chr2	 59960353	 59960908	-	lnc-FANCL-3	lnc-FANCL-3:2	ENSG00000233891.3	AC007131.2	NA	NA	NA	inter
CUST_21836_PI429285431	4.0010877	P	4.6176577	P	0.65221973489819	0	lncRNA	23446-1_{1..464}	lnc-AKTIP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AKTIP-2:1	chr16	 53086673	 53087136	-	lnc-AKTIP-2	lnc-AKTIP-2:1	ENSG00000261550.1	RP11-467J12.4	CHD9	NA	chr16:53076673-53096785	inter
CUST_26250_PI429285431	1.4302061	A	0.93078244	A	1.41364871322755	0	lncRNA	27757-1_{1..721}	lnc-PACRGL-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PACRGL-3:1	chr4	 21614955	 21615675	+	lnc-PACRGL-3	lnc-PACRGL-3:1	ENSG00000250092.2	RP11-556G22.3	KCNIP4	NA	chr4:21604955-21625351	inner
CUST_24873_PI429285431	3.9783766	P	4.2152386	P	0.848589069026482	0	lncRNA	26414-1_{1..601}	lnc-PLAT-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLAT-3:2	chr8	 42128169	 42128769	-	lnc-PLAT-3	lnc-PLAT-3:2	ENSG00000253408.1	RP11-231D20.2	IKBKB	NA	chr8:42128820-42138438	inter
CUST_10324_PI429285431	1.9343259	A	1.0032964	A	1.90663607677064	0	lncRNA	11852-1_{1..605}	lnc-LSM6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LSM6-1:2	chr4	147034239	147034843	+	lnc-LSM6-1	lnc-LSM6-1:2	XLOC_003721	linc-LSM6-1	NA	NA	NA	inter
CUST_8241_PI429285431	2.7575822	A	2.2395663	A	1.43198452307313	0	lncRNA	9831-1_{1..704}	lnc-ALX4-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALX4-5:3	chr11	 43855160	 43855863	-	lnc-ALX4-5	lnc-ALX4-5:3	ENSG00000246250	ENSG00000246250.2	HSD17B12	NA	chr11:43845160-43865492	inner
CUST_28256_PI429285431	1.4082586	A	1.1470107	A	1.19851494589145	0	lncRNA	29892-1_{1..379}	n325549|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255665|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255665|-0.9599980|-0.2950962	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325549|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255665|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255665|-0.9599980|-0.2950962	chr17	 44068906	 44069284	-	NA	NA	NA	NA	MAPT	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MAPT:range=chr17_ctg5_hap1:766441-8279955'pad=0,hg19_refFlat_MAPT:range=chr17_ctg5_hap1:766441-8279955'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_MAPT:range=chr17:44039704-441015375'pad=0,hg19_refFlat_MAPT:range=chr17:44039704-441015375'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30chr17:44058906-44081471"	NA	inner
LNCA_21_P0009137	2.3181937	A	2.051181	A	1.20331361868559	0	lncRNA	CR627169	NA	CR627169	NA	Hs.537253	XLOC_012041	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012041), lincRNA [TCONS_00025078]"	chr16:86120001-86119942	hs|16q24.1	Agilent_HUMAN_G3V2	CR627169	CR627169	chr16	 86119942	 86120001	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28727_PI429285431	3.7014875	P	4.30518	P	0.65806750989164	0	lncRNA	30427-1_{1..332}	n326117|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046445|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046445|-1.4045000|-0.1739720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326117|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046445|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046445|-1.4045000|-0.1739720	chr10	  2531912	  2532243	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10147_PI429285431	0.9215692	A	2.0468829	A	0.458402335636979	0	lncRNA	11671-1_{1..386}	lnc-C22orf34-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C22orf34-2:1	chr22	 49446168	 49446553	-	lnc-C22orf34-2	lnc-C22orf34-2:1	XLOC_014410	linc-CERK-1	NA	NA	NA	inter
LNCA_21_P0005594	6.93326	P	6.5434794	P	1.31019413897927	0	lncRNA	TCONS_00014248	NA	NA	NA	NA	XLOC_006336	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006336), lincRNA [TCONS_00014248]"	chr7:2761595-2761536	hs|7p22.3	Agilent_HUMAN_G3V2	TCONS_00014248	TCONS_00014248	chr7	  2761536	  2761595	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23684_PI429285431	3.436248	P	1.7331191	A	3.25606364573501	0	lncRNA	25249-1_{1..2974}	lnc-TSC22D2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TSC22D2-1:2	chr3	150181245	150184218	+	lnc-TSC22D2-1	lnc-TSC22D2-1:2	ENSG00000261050.1	RP11-145F16.2	TSC22D2	NA	chr3:150171245-150177631	inter
CUST_46748_PI429285431	2.988865	A	2.9308586	A	1.04102621581394	0	lncRNA	50898-1_{1..640}	"gi|387849252|ref|NR_049723.1| Homo sapiens mago-nashi homolog 2 (pseudogene) (MAGOH2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387849252|ref|NR_049723.1| Homo sapiens mago-nashi homolog 2 (pseudogene) (MAGOH2), non-coding RNA"	Chr17	 10619260	 10619899	-	100506898	NR_049723.1	NA	NA	NA	NA	NA	inter
CUST_11585_PI429285431	8.518668	P	9.019013	P	0.706937706873464	0	lncRNA	13164-1_{1..1141}	lnc-SLFN5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLFN5-1:3	chr17	 33651673	 33652813	+	lnc-SLFN5-1	lnc-SLFN5-1:3	XLOC_012177	linc-AP2B1-2	NA	NA	NA	inter
CUST_25237_PI429285431	0.9146019	A	0.9128349	A	1.00122554143094	0	lncRNA	26768-1_{1..195}	lnc-TRPC5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRPC5-1:1	chrX	110954224	110954418	-	lnc-TRPC5-1	lnc-TRPC5-1:1	ENSG00000229487.1	ALG13-AS1	ALG13	NA	chrX:110944224-110964329	inner
LNCA_21_P0001660	1.0189458	A	0.9996948	A	1.01343320187217	0	lncRNA	TCONS_00001926	NA	NA	NA	NA	XLOC_000031	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000031), lincRNA [TCONS_00001926]"	chr1:4058158-4058217	hs|1p36.32	Agilent_HUMAN_G3V2	TCONS_00001926	TCONS_00001926	chr1	  4058158	  4058217	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51833_PI429285431	3.242041	P	3.7856498	P	0.686052648547362	0	lncRNA	55388-1_{1..966}	hg19_lincRNAsTranscripts_TCONS_l2_00013085 range=chr19:37176046-37177681 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013085 range=chr19:37176046-37177681 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 37176046	 37177011	-	NA	NA	NA	NA	ZNF567	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00chr19:37180302-37187681"	NA	inter
CUST_18998_PI429285431	1.7488316	A	1.7451035	A	1.00258746372496	0	lncRNA	20689-1_{1..831}	lnc-C7orf65-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C7orf65-3:1	chr7	 47022609	 47023439	+	lnc-C7orf65-3	lnc-C7orf65-3:1	ENSG00000223829	AC004870.4	NA	NA	NA	inter
CUST_9730_PI429285431	0.91403186	A	0.9181499	A	0.997149662133203	0	lncRNA	11246-1_{1..377}	lnc-TMTC3-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMTC3-4:2	chr12	 90343252	 90343628	+	lnc-TMTC3-4	lnc-TMTC3-4:2	XLOC_009827	linc-CLLU1-8	NA	NA	NA	inter
CUST_11527_PI429285431	7.578391	P	8.41336	P	0.560595084706812	0	lncRNA	13098-1_{1..331}	lnc-SLC4A1AP-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC4A1AP-1:8	chr2	 27980249	 27980579	+	lnc-SLC4A1AP-1	lnc-SLC4A1AP-1:8	XLOC_001406	linc-MRPL33	NA	NA	NA	inter
CUST_15598_PI429285431	1.2582527	A	0.9620676	A	1.22789321440334	0	lncRNA	17285-1_{1..568}	lnc-PRMT10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRMT10-1:1	chr4	148538239	148538806	-	lnc-PRMT10-1	lnc-PRMT10-1:1	XLOC_004115	linc-TTC29-2	TMEM184C	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00chr4:148538539-148548396"	NA	inter
CUST_9073_PI429285431	4.927435	P	5.26419	P	0.791820322220034	0	lncRNA	10596-1_{1..2885}	lnc-ZNF625-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF625-1:1	chr19	 12304204	 12307088	-	lnc-ZNF625-1	lnc-ZNF625-1:1	ENSG00000229504	XLOC_013235	ZNF136	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60chr19:12294204-12300064"	NA	inter
CUST_38402_PI429285431	4.4387636	P	4.383894	P	1.03876520881462	0	lncRNA	39436-2_{3001..6000}	n382339|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yxn.3||-0.8301960|-0.2574107	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n382339|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yxn.3||-0.8301960|-0.2574107	chr15	 25307603	 25310602	+	NA	NA	NA	NA	SNRPN	NA	chr15:25294603-25377621	inter
CUST_46919_PI429285431	11.447415	P	11.03609	P	1.32990666628254	0	lncRNA	51034-1_{1..2000}	"gi|384381469|ref|NR_047576.1| Homo sapiens ferredoxin reductase (FDXR), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384381469|ref|NR_047576.1| Homo sapiens ferredoxin reductase (FDXR), transcript variant 8, non-coding RNA"	Chr17	 72858619	 72860618	-	2232	NR_047576.1	NA	NA	NA	NA	NA	inter
CUST_22782_PI429285431	1.2115945	A	1.2280993	A	0.988624935301268	0	lncRNA	24362-1_{1..648}	lnc-COX6C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COX6C-1:1	chr8	100811283	100811930	-	lnc-COX6C-1	lnc-COX6C-1:1	ENSG00000253539.1	RP11-402L5.1	VPS13B	NA	chr8:100801283-100821415	inner
CUST_1466_PI429285431	0.95845485	A	1.1423193	A	0.880341723152816	0	lncRNA	1455-1_{1..1288}	"transcript_id ""ENST00000478772.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000478772.1"" | genecode_v17"	chr3	137490791	137492078	+	ENSG00000239513.1	ENST00000478772.1	RP11-2A4.3	RP11-2A4.3-001	SOX14	NA	chr3:137483134-137485176	inter
CUST_33707_PI429285431	0.9233196	A	0.9142816	A	1.00628432826823	0	lncRNA	35267-1_{1..728}	n340485|BC009643|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2946|NULL|-0.9170300|-0.1701239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340485|BC009643|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2946|NULL|-0.9170300|-0.1701239	chr5	 65509778	 65510505	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5219_PI429285431	1.2039939	A	0.9136096	A	1.22296600366385	0	lncRNA	5160-1_{1..421}	"transcript_id ""ENST00000558454.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558454.1"" | genecode_v17"	chr15	 69576501	 69576921	+	ENSG00000259504.1	ENST00000558454.1	RP11-352D13.5	RP11-352D13.5-002	PAQR5	NA	chr15:69591294-69597661	inter
CUST_23874_PI429285431	6.6424975	P	6.6176915	P	1.01734288024458	0	lncRNA	25434-1_{1..3000}	lnc-HMBS-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMBS-1:3	chr11	118952169	118955168	+	lnc-HMBS-1	lnc-HMBS-1:3	ENSG00000160695.8	VPS11	HMBS	NA	chr11:118955587-118962677	inner
CUST_39910_PI429285431	9.632831	P	9.356451	P	1.21115205446102	0	lncRNA	40791-2_{3001..5682}	n406648|NR_024179|lncRNA|Homosapiens||RefGeneNoncode|NR_024179||3.4073400|-0.3328091	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406648|NR_024179|lncRNA|Homosapiens||RefGeneNoncode|NR_024179||3.4073400|-0.3328091	chr4	 95376037	 95378718	+	NA	NA	NA	NA	PDLIM5	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00chr4:95373038-95589377"	NA	inner
CUST_32439_PI429285431	0.90500724	A	1.7438995	A	0.559072675290921	0	lncRNA	34112-2_{3001..4505}	n339037|CR749491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1466|NULL|-0.1938820|-0.3414275	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339037|CR749491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1466|NULL|-0.1938820|-0.3414275	chr2	179422287	179423791	+	NA	NA	NA	NA	TTN	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30chr2:179409287-179433693"	NA	inter
CUST_13694_PI429285431	1.2596619	A	2.2136261	A	0.516212077214552	0	lncRNA	15334-1_{1..451}	lnc-REG1B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-REG1B-3:1	chr2	 79107618	 79108068	-	lnc-REG1B-3	lnc-REG1B-3:1	XLOC_002176	linc-LRRTM4-5	NA	NA	NA	inter
CUST_17536_PI429285431	1.2915498	A	1.3529106	A	0.958359734727977	0	lncRNA	19261-1_{1..623}	lnc-FRK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRK-1:1	chr6	116247641	116248263	-	lnc-FRK-1	lnc-FRK-1:1	XLOC_005815	linc-HS3ST5-2	NA	NA	NA	inter
CUST_40571_PI429285431	4.3315024	P	4.6105704	P	0.824123239806176	0	lncRNA	41325-1_{1..2430}	n410007|NR_036434|lncRNA|Homosapiens||RefGeneNoncode|NR_036434||4.9581600|-0.4157596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410007|NR_036434|lncRNA|Homosapiens||RefGeneNoncode|NR_036434||4.9581600|-0.4157596	chr12	122989189	122991618	-	NA	NA	NA	NA	KNTC1	NA	chr12:123011809-123021560	inner
CUST_12370_PI429285431	5.171691	P	5.6704264	P	0.707726870141663	0	lncRNA	13982-1_{1..243}	lnc-ZC3H12B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZC3H12B-2:2	chrX	 64333544	 64333786	+	lnc-ZC3H12B-2	lnc-ZC3H12B-2:2	XLOC_008000	linc-ZC3H12B-2	NA	NA	NA	inter
CUST_2352_PI429285431	8.225647	P	8.13936	P	1.06163438231264	0	lncRNA	2344-1_{1..643}	"transcript_id ""ENST00000514619.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514619.1"" | genecode_v17"	chr5	124537581	124538223	+	ENSG00000248631.1	ENST00000514619.1	RP11-425E13.1	RP11-425E13.1-001	NA	NA	NA	inter
CUST_8866_PI429285431	0.90778834	A	1.5581839	A	0.637105607267276	0	lncRNA	10405-1_{1..427}	lnc-OTUB2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OTUB2-1:2	chr14	 94467491	 94467917	+	lnc-OTUB2-1	lnc-OTUB2-1:2	ENSG00000175699	C14orf48	NA	NA	NA	inter
CUST_24752_PI429285431	2.4716463	A	2.1806235	A	1.22350737699078	0	lncRNA	26296-1_{1..528}	lnc-DONSON-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DONSON-1:1	chr21	 34950605	 34951132	-	lnc-DONSON-1	lnc-DONSON-1:1	ENSG00000240368.1	AP000304.2	SON	"hg19_refFlat_SON:range=chr21:34915399-349487305'pad=0,hg19_refFlat_SON:range=chr21:34915399-349487305'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_SON:range=chr21:34915399-349324375'pad=0,hg19_refFlat_SON:range=chr21:34915399-349324375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60chr21:34940605-34949812"	NA	inner
CUST_41288_PI429285431	7.216696	P	7.188018	P	1.02007695940204	0	lncRNA	42276-1_{1..75}	ENST00000583047 ncrna:miRNA chromosome:GRCh37:X:1413025:1413099:1 gene:ENSG00000263835 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583047 ncrna:miRNA chromosome:GRCh37:X:1413025:1413099:1 gene:ENSG00000263835 gene_biotype:miRNA transcript_biotype:miRNA	chrX	  1413025	  1413099	+	ENSG00000263835	ENST00000583047	NA	NA	CSF2RA	NA	chrX:1403025-1423099	inner
CUST_13614_PI429285431	1.059746	A	0.9198222	A	1.10184691719286	0	lncRNA	15253-1_{1..692}	lnc-STXBP6-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STXBP6-1:3	chr14	 25614608	 25615299	-	lnc-STXBP6-1	lnc-STXBP6-1:3	XLOC_010978	linc-STXBP6-1	NA	NA	NA	inter
CUST_37280_PI429285431	1.3859191	A	1.6116356	A	0.855170208506982	0	lncRNA	38389-1_{1..1364}	n345722|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1271|NULL|-1.6357400|-0.3382200	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345722|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1271|NULL|-1.6357400|-0.3382200	chr13	 54684971	 54686334	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43191_PI429285431	2.5013814	A	3.0449333	A	0.686079707048573	0	lncRNA	48005-1_{1..493}	ENST00000600473 havana:sense_intronic chromosome:GRCh37:19:39335369:39336139:-1 gene:ENSG00000269688 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000600473 havana:sense_intronic chromosome:GRCh37:19:39335369:39336139:-1 gene:ENSG00000269688 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 39335369	 39335861	-	ENSG00000269688	ENST00000600473	NA	NA	HNRNPL	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-20.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60chr19:39327028-39342979"	NA	inner
CUST_20823_PI429285431	0.909835	A	0.9046757	A	1.00358255631759	0	lncRNA	22454-1_{1..537}	lnc-RAP1GDS1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAP1GDS1-4:1	chr4	 98411147	 98411683	+	lnc-RAP1GDS1-4	lnc-RAP1GDS1-4:1	ENSG00000251620.1	RP11-18N21.2	NA	NA	NA	inter
CUST_50961_PI429285431	6.6026397	P	6.864686	P	0.833904281143541	0	lncRNA	54602-1_{1..468}	hg19_lincRNAsTranscripts_TCONS_l2_00005764 range=chr12:76953674-77009090 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005764 range=chr12:76953674-77009090 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 76953674	 76954141	+	NA	NA	NA	NA	OSBPL8	NA	chr12:76943674-76953589	inter
LNCA_21_P0006248	0.9939503	A	0.9282761	A	1.04657391027175	0	lncRNA	TCONS_00016246	NA	NA	NA	NA	XLOC_007629	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007629), lincRNA [TCONS_00016246]"	chr9:755295-755236	hs|9p24.3	Agilent_HUMAN_G3V2	TCONS_00016246	TCONS_00016246	chr9	   755236	   755295	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29488_PI429285431	0.9166687	A	0.91667473	A	0.999995820331236	0	lncRNA	31246-1_{1..494}	n332913|AF086396|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067275|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067275|-1.3733700|-0.3897304	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332913|AF086396|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067275|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067275|-1.3733700|-0.3897304	chr18	 20504868	 20505361	-	NA	NA	NA	NA	RBBP8	"hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50chr18:20513295-20515362"	NA	inter
CUST_18146_PI429285431	4.4963565	P	3.7269127	P	1.70461248021198	0	lncRNA	19881-1_{1..590}	lnc-AGPS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AGPS-2:1	chr2	178483016	178483605	+	lnc-AGPS-2	lnc-AGPS-2:1	ENSG00000237655	AC073834.3	PDE11A	"hg19_refFlat_TTC30B:range=chr2:178415494-1784174915'pad=0,hg19_refFlat_TTC30B:range=chr2:178415494-1784174915'pad=0 3'pad=0 strand=- repeatMasking=none,-98.00;hg19_refFlat_TTC30A:range=chr2:178481432-1784834295'pad=0,hg19_refFlat_TTC30A:range=chr2:178481432-1784834295'pad=0 3'pad=0 strand=- repeatMasking=none,-98.00chr2:178487977-178493300"	NA	inner
CUST_23227_PI429285431	0.9003867	A	0.89691997	A	1.00240584353343	0	lncRNA	24799-1_{1..611}	lnc-PRKD1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRKD1-2:2	chr14	 30972436	 30973046	-	lnc-PRKD1-2	lnc-PRKD1-2:2	ENSG00000257636.1	RP11-1103G16.1	NA	NA	NA	inter
CUST_38675_PI429285431	0.9224144	A	1.5839411	A	0.632208921815072	0	lncRNA	39674-1_{1..447}	n383986|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ylh.1||-1.2076300|-0.5190785	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383986|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ylh.1||-1.2076300|-0.5190785	chr21	 23540287	 23540733	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42350_PI429285431	5.135105	P	5.214737	P	0.946298996151866	0	lncRNA	45013-1_{1..73}	ENST00000459126 ncrna:snoRNA chromosome:GRCh37:8:41284174:41284246:1 gene:ENSG00000238936 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459126 ncrna:snoRNA chromosome:GRCh37:8:41284174:41284246:1 gene:ENSG00000238936 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	 41284174	 41284246	+	ENSG00000238936	ENST00000459126	NA	NA	NA	NA	NA	inter
CUST_12486_PI429285431	2.2538097	A	1.482023	A	1.70738297646101	0	lncRNA	14097-1_{1..1859}	lnc-C9orf170-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf170-1:3	chr9	 89612144	 89614002	+	lnc-C9orf170-1	lnc-C9orf170-1:3	XLOC_007438	linc-C9orf170-1	NA	NA	NA	inter
CUST_9270_PI429285431	7.1908817	P	7.2967296	P	0.929258638674864	0	lncRNA	10775-1_{1..581}	lnc-C9orf69-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C9orf69-1:2	chr9	139009918	139010498	-	lnc-C9orf69-1	lnc-C9orf69-1:2	ENSG00000238227	C9orf69	C9orf69	NA	chr9:139006427-139010731	inner
CUST_48343_PI429285431	1.3126276	A	1.4424047	A	0.91397265038663	0	lncRNA	52198-1_{1..831}	hg19_lincRNAsTranscripts_TCONS_l2_00000291 range=chr1:55353585-55354946 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000291 range=chr1:55353585-55354946 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 55353585	 55354415	+	NA	NA	NA	NA	DHCR24	NA	chr1:55343585-55352921	inter
CUST_25721_PI429285431	5.6313148	P	5.1595097	P	1.38684360169138	0	lncRNA	27249-1_{1..541}	lnc-TRIM16-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM16-2:1	chr17	 15652075	 15652615	-	lnc-TRIM16-2	lnc-TRIM16-2:1	ENSG00000233002.2	AC005324.6	TBC1D26	NA	chr17:15642075-15648098	inter
CUST_8897_PI429285431	1.0043507	A	0.9310291	A	1.05213629121835	0	lncRNA	10432-1_{1..1994}	lnc-CR392000.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CR392000.1-1:1	chr9	139157420	139159413	+	lnc-CR392000.1-1	lnc-CR392000.1-1:1	ENSG00000246129	XLOC_007612	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70"	NA	inter
LNCA_21_P0005399	0.98460305	A	0.92286456	A	1.04372271995941	0	lncRNA	TCONS_00013529	NA	NA	NA	NA	XLOC_006169	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006169), lincRNA [TCONS_00013529]"	chr7:92076100-92076159	hs|7q21.2	Agilent_HUMAN_G3V2	TCONS_00013529	TCONS_00013529	chr7	 92076100	 92076159	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9970_PI429285431	0.9547692	A	0.9193584	A	1.02484860186305	0	lncRNA	11494-1_{1..2333}	lnc-ACP1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACP1-3:4	chr2	   209485	   211817	+	lnc-ACP1-3	lnc-ACP1-3:4	XLOC_001300	linc-ACP1	SH3YL1	NA	chr2:218136-221224	inter
CUST_4811_PI429285431	1.0579009	A	1.4589663	A	0.757298827421983	0	lncRNA	4755-1_{1..357}	"transcript_id ""ENST00000553463.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553463.1"" | genecode_v17"	chr14	 50474052	 50474408	-	ENSG00000258929.2	ENST00000553463.1	RP11-58E21.3	RP11-58E21.3-004	C14orf182	NA	chr14:50464052-50474238	inner
CUST_35422_PI429285431	0.9262441	A	0.9244756	A	1.00122658242648	0	lncRNA	36831-2_{3001..3949}	n342485|AK126307|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4979|NULL|-1.0325700|-0.3769077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342485|AK126307|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4979|NULL|-1.0325700|-0.3769077	chr3	   580913	   581861	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90"	NA	inter
CUST_45847_PI429285431	0.9111148	A	0.9038354	A	1.00505844654494	0	lncRNA	50179-1_{1..3000}	"gi|262263332|ref|NR_030691.1| Homo sapiens anoctamin 1, calcium activated chloride channel (ANO1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|262263332|ref|NR_030691.1| Homo sapiens anoctamin 1, calcium activated chloride channel (ANO1), transcript variant 2, non-coding RNA"	Chr11	 69931516	 69934515	+	55107	NR_030691.1	NA	NA	NA	NA	NA	inter
CUST_44122_PI429285431	1.5579097	A	2.91462	A	0.390471646988669	0	lncRNA	48788-1_{1..1050}	"gi|224465261|ref|NR_027103.1| Homo sapiens long intergenic non-protein coding RNA 620 (LINC00620), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224465261|ref|NR_027103.1| Homo sapiens long intergenic non-protein coding RNA 620 (LINC00620), non-coding RNA"	Chr3	 13692221	 13693270	+	285375	NR_027103.1	NA	NA	NA	NA	NA	inter
CUST_17747_PI429285431	5.4272976	P	5.417699	P	1.00667542451214	0	lncRNA	19477-1_{1..544}	lnc-HK2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HK2-1:6	chr2	 75159788	 75160331	+	lnc-HK2-1	lnc-HK2-1:6	XLOC_001537	linc-POLE4	NA	NA	NA	inter
LNCA_21_P0004864	4.872217	P	4.7885647	P	1.05969735784661	0	lncRNA	XR_108691	XR_108691	XR_108691	NA	NA	LOC100507100	uncharacterized LOC100507100	NA	THC2607977	NA	"PREDICTED: Homo sapiens hypothetical LOC100507100 (LOC100507100), miscRNA [XR_108691]"	chr6:26687991-26688050	hs|6p22.2	Agilent_HUMAN_G3V2	XR_108691	XR_108691	chr6	 26687991	 26688050	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3518_PI429285431	1.8373144	A	1.0723071	A	1.69937859706777	0	lncRNA	3489-1_{1..2319}	"transcript_id ""ENST00000427548.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427548.1"" | genecode_v17"	chr9	115759495	115761813	-	ENSG00000228623.2	ENST00000427548.1	ZNF883	ZNF883-001	ZNF883	NA	chr9:115759400-115774472	inner
CUST_24738_PI429285431	8.433263	P	8.645803	P	0.863016471498164	0	lncRNA	26283-1_{1..330}	lnc-CCDC113-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC113-1:1	chr16	 58251457	 58251786	+	lnc-CCDC113-1	lnc-CCDC113-1:1	ENSG00000260867.1	RP11-459F6.1	NA	NA	NA	inter
CUST_47190_PI429285431	2.8116305	A	1.3663161	A	2.72322162770154	0	lncRNA	51264-2_{3001..3752}	"gi|291621684|ref|NR_033418.1| Homo sapiens zinc finger protein 542 (ZNF542), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|291621684|ref|NR_033418.1| Homo sapiens zinc finger protein 542 (ZNF542), transcript variant 1, non-coding RNA"	Chr19	 56882490	 56883241	+	147947	NR_033418.1	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60"	NA	inter
LNCA_21_P0014098	5.6874814	P	6.006715	P	0.801495541390153	0	lncRNA	XR_108426	XR_108426	XR_108426	NA	NA	LOC100507475	uncharacterized LOC100507475	ENST00000448588	THC2579173	NA	"PREDICTED: Homo sapiens hypothetical LOC100507475 (LOC100507475), miscRNA [XR_108426]"	chr2:209120795-209120854	hs|2q34	Agilent_HUMAN_G3V2	XR_108426	XR_108426	chr2	209120795	209120854	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30962_PI429285431	4.84958	P	4.965868	P	0.922558307287675	0	lncRNA	32750-1_{1..516}	n337089|DQ438892|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343352|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343352|1.3314500|-0.0683126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337089|DQ438892|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343352|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343352|1.3314500|-0.0683126	chr9	  4118745	  4119260	-	NA	NA	NA	NA	GLIS3	NA	chr9:4108745-4300035	inner
CUST_35832_PI429285431	0.92301065	A	0.92937726	A	0.995596725195704	0	lncRNA	37234-1_{1..2079}	n344504|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_52|NULL|-1.2643200|-0.2197797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344504|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_52|NULL|-1.2643200|-0.2197797	chr7	 64734262	 64736340	+	NA	NA	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40"	NA	inter
CUST_50956_PI429285431	1.2472435	A	0.91499376	A	1.25897509151125	0	lncRNA	54597-1_{1..257}	hg19_lincRNAsTranscripts_TCONS_l2_00006313 range=chr12:70613364-70619031 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006313 range=chr12:70613364-70619031 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 70613364	 70613620	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2948_PI429285431	4.586946	P	4.572328	P	1.01018393232462	0	lncRNA	2929-1_{1..1764}	"transcript_id ""ENST00000564834.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000564834.1"" | genecode_v17"	chr7	152160871	152162634	+	ENSG00000261455.1	ENST00000564834.1	RP5-1129J21.3	RP5-1129J21.3-001	NA	NA	NA	inter
CUST_34620_PI429285431	5.3886366	P	5.3171997	P	1.05076270461084	0	lncRNA	36074-2_{3001..5901}	n341510|AB037837|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3980|NULL|20.8117000|-0.1063368	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341510|AB037837|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3980|NULL|20.8117000|-0.1063368	chr8	 61715994	 61718894	+	NA	NA	NA	NA	CHD7	NA	chr8:61702994-61780587	inner
CUST_454_PI429285431	1.4465526	A	4.2486196	P	0.143381719103148	0	lncRNA	446-1_{1..302}	"transcript_id ""ENST00000444515.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444515.1"" | genecode_v17"	chr1	152627953	152628254	+	ENSG00000176075.6	ENST00000444515.1	LINC00302	LINC00302-001	LCE2D	NA	chr1:152617953-152637135	inter
CUST_30744_PI429285431	5.80337	P	5.862749	P	0.959677118072834	0	lncRNA	32529-1_{1..254}	n336319|Y19240|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326115|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326115|1.0644700|-0.1878300	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336319|Y19240|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326115|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326115|1.0644700|-0.1878300	chr11	 61314638	 61314891	-	NA	NA	NA	NA	SYT7	NA	chr11:61304638-61333609	inner
CUST_26237_PI429285431	1.360231	A	1.3538218	A	1.00445240152593	0	lncRNA	27744-1_{1..852}	lnc-PRDM9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRDM9-2:1	chr5	 21779367	 21780218	+	lnc-PRDM9-2	lnc-PRDM9-2:1	ENSG00000253766.1	RP11-804N13.1	CDH12	"hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0,hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70chr5:21769367-21789631"	NA	inner
LNCA_33_P3413810	5.0934176	P	5.1754637	P	0.944716852952251	0	lncRNA	XR_113267	XR_113267	XR_113267	NA	Hs.678824	NA	NA	NA	THC2484473	NA	"PREDICTED: Homo sapiens hypothetical LOC100128155 (LOC100128155), miscRNA [XR_113267]"	chr9:136758678-136758619	hs|9q34.2	Agilent_HUMAN_G3V2	XR_113267	XR_113267	chr9	136758619	136758678	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16474_PI429285431	3.5654483	P	3.3227677	A	1.18318904510025	0	lncRNA	18172-1_{1..827}	lnc-C10orf31-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf31-7:3	chr10	 10836661	 10837487	-	lnc-C10orf31-7	lnc-C10orf31-7:3	XLOC_008730	linc-KIN-6	NA	NA	NA	inter
CUST_48096_PI429285431	6.734316	P	6.592304	P	1.10344291818396	0	lncRNA	51971-2_{3001..3366}	"gi|310115168|ref|XR_112958.1| PREDICTED: Homo sapiens uncharacterized LOC100129484 (LOC100129484), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310115168|ref|XR_112958.1| PREDICTED: Homo sapiens uncharacterized LOC100129484 (LOC100129484), misc_RNA"	NA	NA	NA	NA	NA	XR_112958.1	NA	NA	NA	NA	NA	Unknown
CUST_38481_PI429285431	0.9178134	A	0.9208277	A	0.997912827633409	0	lncRNA	39499-1_{1..1598}	n382986|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002edz.1||-1.0300500|-0.2680389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n382986|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002edz.1||-1.0300500|-0.2680389	chr16	 34980922	 34982519	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1997_PI429285431	1.2847983	A	0.91519487	A	1.2919976357318	0	lncRNA	1988-1_{1..493}	"transcript_id ""ENST00000512547.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512547.1"" | genecode_v17"	chr4	182182314	182182806	-	ENSG00000249460.1	ENST00000512547.1	RP11-665C14.2	RP11-665C14.2-001	NA	NA	NA	inter
CUST_9405_PI429285431	0.9202392	A	0.9167099	A	1.00244931903725	0	lncRNA	10908-1_{1..1271}	lnc-TMEM132C-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132C-8:1	chr12	127566452	127567722	+	lnc-TMEM132C-8	lnc-TMEM132C-8:1	XLOC_009942	linc-TMEM132C-7	NA	NA	NA	inter
CUST_6044_PI429285431	0.92104125	A	1.156904	A	0.849177028594216	0	lncRNA	5970-1_{1..574}	"transcript_id ""ENST00000583827.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583827.1"" | genecode_v17"	chr18	  1780330	  1780903	+	ENSG00000264080.1	ENST00000583827.1	CTD-2015H3.1	CTD-2015H3.1-001	NA	NA	NA	inter
CUST_6823_PI429285431	0.92008376	A	0.9172452	A	1.00196947673749	0	lncRNA	6771-1_{1..684}	"transcript_id ""ENST00000418942.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418942.1"" | genecode_v17"	chr21	 26467355	 26468038	+	ENSG00000232512.1	ENST00000418942.1	AP000233.2	AP000233.2-002	NA	NA	NA	inter
CUST_39687_PI429285431	4.3410454	P	3.609219	P	1.66074019870778	0	lncRNA	40627-1_{1..3000}	n405414|NR_002164|lncRNA|Homosapiens||RefGeneNoncode|NR_002164||6.1382100|-0.2139464	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405414|NR_002164|lncRNA|Homosapiens||RefGeneNoncode|NR_002164||6.1382100|-0.2139464	chr7	 72656901	 72659900	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-60.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	inter
CUST_44139_PI429285431	0.9008962	A	2.412389	A	0.350748101480589	0	lncRNA	48802-1_{1..1018}	"gi|310119179|ref|XR_110047.1| PREDICTED: Homo sapiens uncharacterized LOC389102 (YPLR6490), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119179|ref|XR_110047.1| PREDICTED: Homo sapiens uncharacterized LOC389102 (YPLR6490), misc_RNA"	Chr3	 32857842	 32858859	-	389102	XR_110047.2	NA	NA	NA	NA	NA	inter
CUST_4477_PI429285431	0.9212921	A	0.9245194	A	0.997765506310361	0	lncRNA	4426-1_{1..526}	"transcript_id ""ENST00000541065.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000541065.1"" | genecode_v17"	chr12	127137512	127138037	-	ENSG00000256732.1	ENST00000541065.1	RP11-407A16.3	RP11-407A16.3-003	NA	NA	NA	inter
CUST_12731_PI429285431	0.9290715	A	0.9148489	A	1.00990710875137	0	lncRNA	14354-1_{1..484}	lnc-EPG5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPG5-2:1	chr18	 42159876	 42160359	-	lnc-EPG5-2	lnc-EPG5-2:1	XLOC_012832	linc-SYT4-3	NA	NA	NA	inter
CUST_10037_PI429285431	7.839595	P	7.912654	P	0.95062022417091	0	lncRNA	11564-1_{1..237}	lnc-TIMP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TIMP1-1:1	chrX	 47544715	 47544951	+	lnc-TIMP1-1	lnc-TIMP1-1:1	XLOC_007974	linc-ZNF81-1	NA	NA	NA	inter
CUST_27066_PI429285431	0.91322947	A	0.9174503	A	0.997078619147979	0	lncRNA	28599-1_{1..546}	n324176|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327108|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327108|-1.1787600|-0.4547509	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324176|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327108|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327108|-1.1787600|-0.4547509	chr7	156986776	156987321	+	NA	NA	NA	NA	UBE3C	NA	chr7:156976776-156999032	inner
CUST_45143_PI429285431	0.91795975	A	0.9168813	A	1.000747804043	0	lncRNA	49623-1_{1..1472}	"gi|310120169|ref|XR_110590.1| PREDICTED: Homo sapiens family with sequence similarity 85, member A (FAM85A), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120169|ref|XR_110590.1| PREDICTED: Homo sapiens family with sequence similarity 85, member A (FAM85A), misc_RNA"	Chr8	 12052236	 12053707	+	619423	XR_110590.2	NA	NA	NA	NA	NA	inter
CUST_42225_PI429285431	4.529956	P	5.086292	P	0.680027031195486	0	lncRNA	44333-1_{1..78}	ENST00000584034 ncrna:miRNA chromosome:GRCh37:1:67094123:67094200:1 gene:ENSG00000264720 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584034 ncrna:miRNA chromosome:GRCh37:1:67094123:67094200:1 gene:ENSG00000264720 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 67094123	 67094200	+	ENSG00000264720	ENST00000584034	NA	NA	SGIP1	NA	chr1:67084123-67104200	inner
CUST_13918_PI429285431	0.9202457	A	1.2659441	A	0.7869269377455	0	lncRNA	15567-1_{1..231}	lnc-AL137145.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL137145.1-4:1	chr10	  6668892	  6669122	+	lnc-AL137145.1-4	lnc-AL137145.1-4:1	XLOC_008372	linc-ITIH2-8	NA	NA	NA	inter
CUST_12724_PI429285431	4.2566175	P	4.4295936	P	0.887010999447679	0	lncRNA	14343-1_{1..374}	lnc-IL7R-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-IL7R-1:1	chr5	 35939825	 35940198	+	lnc-IL7R-1	lnc-IL7R-1:1	XLOC_004337	linc-SKP2-2	CAPSL	NA	chr5:35929825-35938881	inter
CUST_5125_PI429285431	0.90823376	A	0.9023253	A	1.0041038301339	0	lncRNA	5065-1_{1..485}	"transcript_id ""ENST00000561392.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561392.1"" | genecode_v17"	chr15	 30297646	 30298130	-	ENSG00000259647.1	ENST00000561392.1	RP11-143J24.1	RP11-143J24.1-001	NA	"hg19_refFlat_NCAPG:range=chr4:17812701-178450485'pad=0,hg19_refFlat_NCAPG:range=chr4:17812701-178450485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00"	NA	inter
CUST_16086_PI429285431	0.903585	A	0.89653784	A	1.00489666877426	0	lncRNA	17789-1_{1..985}	lnc-NDC80-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDC80-1:1	chr18	  2370779	  2371763	+	lnc-NDC80-1	lnc-NDC80-1:1	XLOC_012609	linc-NDC80-1	NA	NA	NA	inter
CUST_5949_PI429285431	2.0026884	A	2.5171351	A	0.700061367689593	0	lncRNA	5878-1_{1..437}	"transcript_id ""ENST00000588185.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588185.1"" | genecode_v17"	chr17	 67591007	 67591443	+	ENSG00000227517.2	ENST00000588185.1	AC003051.1	AC003051.1-005	NA	NA	NA	inter
CUST_1395_PI429285431	0.9258386	A	0.9289576	A	0.997840409222766	0	lncRNA	1384-1_{1..376}	"transcript_id ""ENST00000497946.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000497946.1"" | genecode_v17"	chr3	 81811857	 81812232	-	ENSG00000242190.1	ENST00000497946.1	RP11-142L1.1	RP11-142L1.1-001	GBE1	NA	chr3:81801857-81810950	inter
CUST_48529_PI429285431	5.0292363	P	4.792382	P	1.17842039130691	0	lncRNA	52379-1_{1..372}	hg19_lincRNAsTranscripts_TCONS_l2_00013697 range=chr2:67268105-67470440 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013697 range=chr2:67268105-67470440 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 67268105	 67268476	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_52088_PI429285431	2.720073	A	1.4352882	A	2.43645706545916	0	lncRNA	55614-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017552 range=chr22:17082750-17134747 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017552 range=chr22:17082750-17134747 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17082750	 17085749	+	NA	NA	NA	NA	CCT8L2	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SLC25A15:range=chr13:41367363-413838035'pad=0,hg19_refFlat_SLC25A15:range=chr13:41367363-413838035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50chr22:17072750-17073700"	NA	inter
CUST_11856_PI429285431	3.2600288	P	4.368958	P	0.463638025612272	0	lncRNA	13433-1_{1..217}	lnc-HMCN1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HMCN1-2:2	chr1	185590089	185590305	+	lnc-HMCN1-2	lnc-HMCN1-2:2	XLOC_000495	linc-HMCN1-1	NA	NA	NA	inter
LNCA_21_P0007389	0.9281415	A	0.92197716	A	1.00428193629425	0	lncRNA	TCONS_00019740	NA	NA	NA	NA	XLOC_009534	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009534), lincRNA [TCONS_00019740]"	chr11:103436366-103436307	hs|11q22.3	Agilent_HUMAN_G3V2	TCONS_00019740	TCONS_00019740	chr11	103436307	103436366	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47270_PI429285431	12.092017	P	12.342364	P	0.840694185427215	0	lncRNA	51340-1_{1..1251}	"gi|313747551|ref|NR_026562.3| Homo sapiens chromosome 20 open reading frame 24 (C20orf24), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|313747551|ref|NR_026562.3| Homo sapiens chromosome 20 open reading frame 24 (C20orf24), transcript variant 3, non-coding RNA"	Chr20	 35234137	 35235387	+	55969	NR_026562.3	NA	NA	NA	NA	NA	inter
CUST_46404_PI429285431	0.92860675	A	1.4481621	A	0.697586801804939	0	lncRNA	50618-1_{1..662}	"gi|223278361|ref|NR_026774.1| Homo sapiens long intergenic non-protein coding RNA 239 (LINC00239), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223278361|ref|NR_026774.1| Homo sapiens long intergenic non-protein coding RNA 239 (LINC00239), non-coding RNA"	Chr14	102196774	102197435	+	145200	NR_026774.1	NA	NA	NA	NA	NA	inter
CUST_16967_PI429285431	4.8111663	P	5.0273986	P	0.860810571105213	0	lncRNA	18679-1_{1..254}	lnc-PLTP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLTP-1:1	chr20	 44544343	 44544596	-	lnc-PLTP-1	lnc-PLTP-1:1	XLOC_013763	linc-PLTP	PLTP	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20chr20:44534343-44541003"	NA	inter
CUST_41046_PI429285431	9.281013	P	9.372745	P	0.93839549989083	0	lncRNA	41707-1_{1..703}	n411715|NR_044997_3|lncRNA|Homosapiens||RefGeneNoncode|NR_044997_3||-1.1590600|-0.2486205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411715|NR_044997_3|lncRNA|Homosapiens||RefGeneNoncode|NR_044997_3||-1.1590600|-0.2486205	chr6	  4498632	  4499334	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34711_PI429285431	4.999027	P	5.2379103	P	0.847400978672843	0	lncRNA	36159-1_{1..236}	n341619|U58666|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4090|NULL|-1.1644100|-0.2989002	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341619|U58666|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4090|NULL|-1.1644100|-0.2989002	chr8	137681471	137681706	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31248_PI429285431	4.895284	P	4.730937	P	1.12065872493938	0	lncRNA	33039-1_{1..1058}	n337701|BC013072|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|83|NULL|-1.0747400|-0.1997126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337701|BC013072|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|83|NULL|-1.0747400|-0.1997126	chrX	 53108758	 53109815	+	NA	NA	NA	NA	GPR173	NA	chrX:53098758-53109797	inner
CUST_18412_PI429285431	0.9160457	A	0.9095742	A	1.00449577780019	0	lncRNA	20137-1_{1..397}	lnc-C8A-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C8A-5:1	chr1	 58346158	 58346554	+	lnc-C8A-5	lnc-C8A-5:1	ENSG00000230363	RP4-737A23.3	DAB1	NA	chr1:58336158-58356412	inner
CUST_18164_PI429285431	5.2372885	P	5.3473096	P	0.926574510263324	0	lncRNA	19899-1_{1..2593}	lnc-HIC2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-HIC2-1:4	chr22	 21823906	 21826498	+	lnc-HIC2-1	lnc-HIC2-1:4	ENSG00000206140	KB-1323B2.6	TMEM191C	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10chr22:21821459-21824224"	NA	inner
CUST_14655_PI429285431	0.92066157	A	0.9302959	A	0.993344239671421	0	lncRNA	16324-1_{1..1504}	lnc-OXCT1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OXCT1-1:5	chr5	 42175255	 42176758	-	lnc-OXCT1-1	lnc-OXCT1-1:5	XLOC_004800	linc-OXCT1-1	NA	NA	NA	inter
CUST_40020_PI429285431	1.2754347	A	1.5108502	A	0.849440322839643	0	lncRNA	40880-1_{1..3000}	n407180|NR_026641|lncRNA|Homosapiens||RefGeneNoncode|NR_026641||9.5800600|-0.2441475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407180|NR_026641|lncRNA|Homosapiens||RefGeneNoncode|NR_026641||9.5800600|-0.2441475	chr17	 59942727	 59945726	-	NA	NA	NA	NA	BRIP1	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50chr17:59932727-59940920"	NA	inter
CUST_11339_PI429285431	2.7464366	A	3.3693466	P	0.649359809274308	0	lncRNA	12902-1_{1..468}	lnc-EDAR-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EDAR-7:1	chr2	108684294	108684761	-	lnc-EDAR-7	lnc-EDAR-7:1	XLOC_002256	linc-ST6GAL2-8	NA	NA	NA	inter
CUST_3534_PI429285431	1.0496475	A	1.213912	A	0.892383349205236	0	lncRNA	3503-1_{1..382}	"transcript_id ""ENST00000454204.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454204.1"" | genecode_v17"	chr9	122735372	122735753	+	ENSG00000225960.1	ENST00000454204.1	RP11-360A18.1	RP11-360A18.1-001	NA	NA	NA	inter
CUST_48491_PI429285431	2.5649478	A	1.3830303	A	2.26878122671916	0	lncRNA	52344-1_{1..955}	hg19_lincRNAsTranscripts_TCONS_l2_00000925 range=chr1:241587503-241597079 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000925 range=chr1:241587503-241597079 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	241587503	241588457	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40999_PI429285431	3.6330953	P	3.3046503	P	1.25565924027065	0	lncRNA	41664-4_{9001..9419}	n411511|NR_039981|lncRNA|Homosapiens||RefGeneNoncode|NR_039981||-1.2098600|-0.3642356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411511|NR_039981|lncRNA|Homosapiens||RefGeneNoncode|NR_039981||-1.2098600|-0.3642356	chr7	104631193	104631611	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00"	NA	inter
CUST_30489_PI429285431	7.6965685	P	7.9156036	P	0.859139852279053	0	lncRNA	32269-1_{1..515}	n335643|CR607939|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000287134|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000287134|-0.5919460|-0.2304179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335643|CR607939|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000287134|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000287134|-0.5919460|-0.2304179	chr9	 38406578	 38407092	+	NA	NA	NA	NA	IGFBPL1	NA	chr9:38408991-38417093	inter
CUST_47006_PI429285431	1.9714746	A	1.8904241	A	1.05778798970991	0	lncRNA	51103-1_{1..2738}	"gi|334085284|ref|NR_038326.1| Homo sapiens uncharacterized LOC100505776 (LOC100505776), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|334085284|ref|NR_038326.1| Homo sapiens uncharacterized LOC100505776 (LOC100505776), transcript variant 2, non-coding RNA"	Chr18	 69187200	 69189937	-	100505776	NR_038326.1	NA	NA	NA	NA	NA	inter
CUST_18886_PI429285431	5.937646	P	4.8635283	P	2.10543407093106	0	lncRNA	20580-1_{1..3000}	lnc-SPATA21-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPATA21-2:4	chr1	 16931286	 16934285	-	lnc-SPATA21-2	lnc-SPATA21-2:4	ENSG00000219481	NBPF1	NBPF1	NA	chr1:16921286-16939982	inner
CUST_9925_PI429285431	5.4159102	P	5.684662	P	0.830037372214748	0	lncRNA	11450-1_{1..851}	lnc-HLA-E-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HLA-E-4:1	chr6	 30486490	 30487340	+	lnc-HLA-E-4	lnc-HLA-E-4:1	XLOC_005239	linc-PRR3	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00"	NA	inter
CUST_31955_PI429285431	3.6036344	P	3.1845758	A	1.33705480336213	0	lncRNA	33679-1_{1..372}	n338513|BC071808|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|910|NULL|-0.6663860|-0.3543416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338513|BC071808|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|910|NULL|-0.6663860|-0.3543416	chr1	211608413	211608784	+	NA	NA	NA	NA	RD3	NA	chr1:211615616-211618675	inter
LNCA_21_P0010629	0.9987243	A	0.977207	A	1.01502643432875	0	lncRNA	TCONS_l2_00001300	NA	NA	NA	NA	XLOC_l2_000961	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000961), lincRNA [TCONS_l2_00001300]"	chr1:79588747-79578821	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_l2_00001300	TCONS_l2_00001300	chr1	 79578821	 79588747	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26761_PI429285431	1.0899358	A	0.91676253	A	1.12753582288362	0	lncRNA	28260-1_{1..724}	n323812|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058374|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058374|-0.8127620|-0.2990760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323812|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058374|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058374|-0.8127620|-0.2990760	chrX	133511668	133512391	+	NA	NA	NA	NA	PHF6	NA	chrX:133507342-133531619	inner
CUST_42405_PI429285431	1.3245775	A	1.4207255	A	0.93552752108555	0	lncRNA	45105-1_{1..82}	ENST00000516202 ncrna:snoRNA chromosome:GRCh37:1:246996750:246996831:-1 gene:ENSG00000252011 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516202 ncrna:snoRNA chromosome:GRCh37:1:246996750:246996831:-1 gene:ENSG00000252011 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	246996750	246996831	-	ENSG00000252011	ENST00000516202	NA	NA	AHCTF1	NA	chr1:247002400-247006831	inter
CUST_36662_PI429285431	3.1076481	A	3.2102597	P	0.931345521400437	0	lncRNA	37852-2_{3001..6000}	n345157|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_706|NULL|-1.2936500|-0.3024516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345157|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_706|NULL|-1.2936500|-0.3024516	chr11	130734860	130737859	-	NA	NA	NA	NA	SNX19	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80chr11:130745766-130754709"	NA	inter
CUST_40099_PI429285431	2.4646702	A	2.5201108	P	0.962300511021112	0	lncRNA	40944-1_{1..1905}	n407511|NR_026972_4|lncRNA|Homosapiens||RefGeneNoncode|NR_026972_4||0.2806020|-0.3024194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407511|NR_026972_4|lncRNA|Homosapiens||RefGeneNoncode|NR_026972_4||0.2806020|-0.3024194	chr6	  1032127	  1034031	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004560	2.446495	A	2.397346	A	1.03465443400377	0	lncRNA	TCONS_00010957	NA	NA	NA	NA	XLOC_004874	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004874), lincRNA [TCONS_00010957]"	chr5:71870561-71817327	hs|5q13.2	Agilent_HUMAN_G3V2	TCONS_00010957	TCONS_00010957	chr5	 71817327	 71870561	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003541	1.0177621	A	0.9974482	A	1.01418011998072	0	lncRNA	ENST00000502661	NA	NA	NA	NA	XLOC_004176	NA	ENST00000502661	NA	NA	"BROAD Institute lincRNA (XLOC_004176), lincRNA [TCONS_00007906]"	chr4:176267574-176267515	hs|4q34.1	Agilent_HUMAN_G3V2	ENST00000502661	ENST00000502661	chr4	176267515	176267574	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50912_PI429285431	1.1055794	A	0.9689082	A	1.09936556788016	0	lncRNA	54553-1_{1..1126}	hg19_lincRNAsTranscripts_TCONS_l2_00006116 range=chr12:9549678-9558957 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006116 range=chr12:9549678-9558957 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  9549678	  9550803	-	NA	NA	NA	NA	LOC728715	NA	chr12:9549658-9555094	inter
CUST_24742_PI429285431	1.9035103	A	0.9275758	A	1.96691484584837	0	lncRNA	26287-1_{1..462}	lnc-MARCH8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MARCH8-1:1	chr10	 45948488	 45948949	-	lnc-MARCH8-1	lnc-MARCH8-1:1	ENSG00000231964.1	RP11-67C2.2	8-Mar	NA	chr10:45952817-45958569	inter
CUST_3721_PI429285431	1.2161902	A	1.0190125	A	1.14645338828	0	lncRNA	3690-1_{1..456}	"transcript_id ""ENST00000596743.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596743.1"" | genecode_v17"	chr10	 67375492	 67375947	+	ENSG00000228065.5	ENST00000596743.1	RP11-222A11.1	RP11-222A11.1-012	NA	NA	NA	inter
CUST_27341_PI429285431	0.96547943	A	0.9743532	A	0.993868048965972	0	lncRNA	28901-1_{1..381}	n324497|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040961|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040961|-0.8602330|-0.3615115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324497|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040961|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040961|-0.8602330|-0.3615115	chr6	 53542047	 53542427	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28971_PI429285431	0.91786957	A	1.190118	A	0.828028063822039	0	lncRNA	30693-1_{1..648}	n326403|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000100477|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000100477|-1.1360200|-0.3843731	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326403|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000100477|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000100477|-1.1360200|-0.3843731	chr1	144087523	144088170	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001446	5.583103	P	5.7627196	P	0.882937608105542	0	lncRNA	TCONS_00001349	NA	NA	NA	NA	XLOC_000641	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000641), lincRNA [TCONS_00001349]"	chr1:245295105-245295164	hs|1q44	Agilent_HUMAN_G3V2	TCONS_00001349	TCONS_00001349	chr1	245295105	245295164	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50847_PI429285431	1.7245083	A	1.3249156	A	1.31913544140143	0	lncRNA	54492-1_{1..2520}	hg19_lincRNAsTranscripts_TCONS_l2_00004657 range=chr11:76092016-76121948 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004657 range=chr11:76092016-76121948 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 76092016	 76094535	+	NA	NA	NA	NA	PRKRIR	NA	chr11:76082016-76091880	inter
CUST_16153_PI429285431	0.9895922	A	0.9304514	A	1.0418451030477	0	lncRNA	17858-1_{1..600}	lnc-RP11-201M22.1.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-201M22.1.1-2:2	chr11	 91589502	 91590101	+	lnc-RP11-201M22.1.1-2	lnc-RP11-201M22.1.1-2:2	XLOC_009249	linc-FAT3-2	NA	NA	NA	inter
LNCA_21_P0002619	10.879055	P	10.881713	P	0.998159310943881	0	lncRNA	TCONS_00004944	NA	NA	NA	NA	XLOC_001747	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001747), lincRNA [TCONS_00004944]"	chr2:171626804-171626863	hs|2q31.1	Agilent_HUMAN_G3V2	TCONS_00004944	TCONS_00004944	chr2	171626804	171626863	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46306_PI429285431	9.134448	P	9.256498	P	0.918881036937194	0	lncRNA	50537-1_{1..1078}	"gi|410170659|ref|XR_110289.3| PREDICTED: Homo sapiens uncharacterized LOC100506446 (LOC100506446), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|410170659|ref|XR_110289.3| PREDICTED: Homo sapiens uncharacterized LOC100506446 (LOC100506446), misc_RNA"	Chr14	 50394285	 50395362	-	100506446	XR_110289.4	NA	NA	NA	NA	NA	inter
CUST_30335_PI429285431	4.2240825	P	3.3834202	P	1.79087209129299	0	lncRNA	32111-1_{1..279}	n335251|AY563000|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255511|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255511|0.5972540|-0.2405928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335251|AY563000|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255511|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255511|0.5972540|-0.2405928	chr12	122826056	122826334	-	NA	NA	NA	NA	CLIP1	NA	chr12:122816056-122849031	inner
CUST_40752_PI429285431	13.941278	P	14.790057	P	0.555254467248037	0	lncRNA	41479-2_{3001..4671}	n410467|NR_037611|lncRNA|Homosapiens||RefGeneNoncode|NR_037611||6.6494100|-0.0834038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410467|NR_037611|lncRNA|Homosapiens||RefGeneNoncode|NR_037611||6.6494100|-0.0834038	chr22	 19707742	 19709412	+	NA	NA	NA	NA	5-Sep	NA	chr22:19701987-19710845	inter
CUST_27260_PI429285431	12.353931	P	13.378211	P	0.491655606637489	0	lncRNA	28813-1_{1..271}	n324406|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042022|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042022|-1.1535900|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324406|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042022|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042022|-1.1535900|-1.0000000	chr6	121752734	121753004	+	NA	NA	NA	NA	GJA1	NA	chr6:121756745-121763726	inter
CUST_2477_PI429285431	0.9131797	A	1.147262	A	0.850225656696916	0	lncRNA	2469-1_{1..661}	"transcript_id ""ENST00000431369.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000431369.1"" | genecode_v17"	chr6	  9124454	  9125114	-	ENSG00000225775.1	ENST00000431369.1	RP11-354I10.1	RP11-354I10.1-001	NA	NA	NA	inter
CUST_8242_PI429285431	1.2833756	A	1.0718471	A	1.15791431607113	0	lncRNA	9832-1_{1..2250}	lnc-ZNF132-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF132-1:1	chr19	 58941397	 58943646	-	lnc-ZNF132-1	lnc-ZNF132-1:1	ENSG00000248580	ENST00000510567	ZNF132	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70chr19:58944181-58951589"	NA	inter
CUST_29155_PI429285431	4.083685	P	3.7922626	P	1.22384631297536	0	lncRNA	30898-1_{1..441}	n326666|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000009783|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000009783|-1.0235000|-0.1715611	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326666|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000009783|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000009783|-1.0235000|-0.1715611	chr1	 27859425	 27859865	-	NA	NA	NA	NA	AHDC1	NA	chr1:27860756-27871820	inner
CUST_31096_PI429285431	1.6061676	A	1.5298821	A	1.05430004179439	0	lncRNA	32887-1_{1..423}	n337375|DQ655938|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393051|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393051|1.0822600|-0.1612880	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337375|DQ655938|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393051|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393051|1.0822600|-0.1612880	chr19	 54783705	 54784127	-	NA	NA	NA	NA	LILRB2	NA	chr19:54777675-54785033	inner
CUST_13925_PI429285431	1.0876926	A	2.3950393	A	0.404063320609996	0	lncRNA	15572-1_{1..419}	lnc-PCTP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCTP-2:1	chr17	 53716013	 53716431	+	lnc-PCTP-2	lnc-PCTP-2:1	XLOC_012255	linc-PCTP	NA	NA	NA	inter
CUST_22472_PI429285431	3.4085608	P	3.2753403	A	1.0967392002502	0	lncRNA	24059-1_{1..333}	lnc-SFTPA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SFTPA2-1:1	chr10	 81265843	 81266175	-	lnc-SFTPA2-1	lnc-SFTPA2-1:1	ENSG00000241317.1	RP11-342M3.1	EIF5AL1	NA	chr10:81272357-81276037	inter
CUST_131_PI429201921	0.95076144	A	0.9262245	A	1.01715316533987	0	lncRNA	121-1_{1..3000}	TC15002668.hg.1	 TCONS_00023201-XLOC_011552 // Rinn lincRNAs // linc-AP3B2 chr15:-:83379224-83382745 // chr15 // 100 // 100 // 0 // --- // 0///TCONS_00023250-XLOC_011552 // Rinn lincRNAs // linc-AP3B2 chr15:-:83379224-83382778 // chr15 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr15:-:83379224-83382778	NA	Affy_HUMAN_HTA2.0	TCONS_00023250-XLOC_011552	linc-AP3B2	chr15	 83379224	 83382778	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002037	8.073857	P	8.334063	P	0.834968687140665	0	lncRNA	ENST00000446073	NA	NA	NA	NA	XLOC_002037	NA	ENST00000446073	NA	NA	"BROAD Institute lincRNA (XLOC_002037), lincRNA [TCONS_00003245]"	chr2:29319771-29319712	hs|2p23.2	Agilent_HUMAN_G3V2	ENST00000446073	ENST00000446073	chr2	 29319712	 29319771	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45307_PI429285431	0.97906834	A	2.44045	A	0.363145180878571	0	lncRNA	49749-1_{1..616}	"gi|210032850|ref|NR_024274.1| Homo sapiens chromosome 9 open reading frame 53 (C9orf53), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|210032850|ref|NR_024274.1| Homo sapiens chromosome 9 open reading frame 53 (C9orf53), non-coding RNA"	Chr9	 21967138	 21967753	+	51198	NR_024274.1	NA	NA	NA	NA	NA	inter
CUST_1785_PI429285431	1.0232477	A	1.0704676	A	0.96779950068462	0	lncRNA	1771-1_{1..305}	"transcript_id ""ENST00000502668.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502668.2"" | genecode_v17"	chr4	 59912738	 59913042	-	ENSG00000250375.2	ENST00000502668.2	RP11-340A13.3	RP11-340A13.3-001	NA	NA	NA	inter
CUST_35315_PI429285431	1.1541615	A	1.753023	A	0.660274804430238	0	lncRNA	36720-1_{1..3000}	n342343|AK126723|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4835|NULL|-0.8688660|-0.1799188	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342343|AK126723|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4835|NULL|-0.8688660|-0.1799188	chr1	202590416	202593415	-	NA	NA	NA	NA	SYT2	NA	chr1:202580416-202604367	inner
CUST_10114_PI429285431	1.0519042	A	0.9248016	A	1.09209820962397	0	lncRNA	11639-1_{1..2055}	lnc-EXOC2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXOC2-5:1	chr6	  1099948	  1102002	-	lnc-EXOC2-5	lnc-EXOC2-5:1	XLOC_005571	linc-HUS1B-7	NA	NA	NA	inter
CUST_35326_PI429285431	5.158773	P	4.7397	P	1.33706814899978	0	lncRNA	36735-1_{1..1163}	n342364|BC038418|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4856|NULL|-0.7708390|-0.2702740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342364|BC038418|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4856|NULL|-0.7708390|-0.2702740	chr1	232447237	232448399	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33909_PI429285431	1.4328662	A	1.6670899	A	0.850142329304012	0	lncRNA	35451-1_{1..1950}	n340701|AK025252|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3164|NULL|-0.1828820|-0.3393159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340701|AK025252|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3164|NULL|-0.1828820|-0.3393159	chr5	156992970	156994919	-	NA	NA	NA	NA	ADAM19	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50chr5:156982970-157002783"	NA	inner
CUST_29422_PI429285431	0.9115313	A	1.0116676	A	0.932944846512416	0	lncRNA	31178-1_{1..271}	n332798|AF052212|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064387|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064387|-1.3548500|-0.2315756	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332798|AF052212|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064387|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064387|-1.3548500|-0.2315756	chr20	 32150209	 32150479	+	NA	NA	NA	NA	CBFA2T2	NA	chr20:32140209-32160480	inner
CUST_20580_PI429285431	1.0990741	A	0.92355	A	1.12937460773534	0	lncRNA	22221-1_{1..413}	lnc-RP11-553A10.1.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-553A10.1.1-1:5	chr3	110788111	110788523	-	lnc-RP11-553A10.1.1-1	lnc-RP11-553A10.1.1-1:5	ENSG00000242242.1	PVRL3-AS1	PVRL3	NA	chr3:110790865-110798237	inter
CUST_21520_PI429285431	6.330249	P	6.697911	P	0.77503748837723	0	lncRNA	23138-1_{1..360}	lnc-KLHL28-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL28-1:1	chr14	 45380960	 45381319	-	lnc-KLHL28-1	lnc-KLHL28-1:1	ENSG00000258949.1	RP11-857B24.5	C14orf28	NA	chr14:45370960-45376460	inter
CUST_6790_PI429285431	0.9728443	A	0.9681992	A	1.00322492689221	0	lncRNA	6738-1_{1..784}	"transcript_id ""ENST00000440372.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440372.1"" | genecode_v17"	chr21	 20290252	 20291035	-	ENSG00000232193.1	ENST00000440372.1	AL157359.4	AL157359.4-001	NA	NA	NA	inter
CUST_42571_PI429285431	8.838417	P	8.684641	P	1.11247737840972	0	lncRNA	45404-1_{1..95}	ENST00000410672 ncrna:snoRNA chromosome:GRCh37:14:75178654:75178748:1 gene:ENSG00000222604 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410672 ncrna:snoRNA chromosome:GRCh37:14:75178654:75178748:1 gene:ENSG00000222604 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 75178654	 75178748	+	ENSG00000222604	ENST00000410672	NA	NA	FCF1	NA	chr14:75179850-75188748	inner
CUST_15707_PI429285431	0.98827386	A	1.1916863	A	0.868493863221663	0	lncRNA	17395-1_{1..1185}	lnc-NOC2L-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOC2L-5:1	chr1	   758019	   759203	-	lnc-NOC2L-5	lnc-NOC2L-5:1	XLOC_000667	linc-OR4F16-5	NA	NA	NA	inter
CUST_12545_PI429285431	1.7626363	A	1.5415956	A	1.1655740797863	0	lncRNA	14156-1_{1..296}	lnc-ZNF827-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF827-7:1	chr4	146390747	146391042	-	lnc-ZNF827-7	lnc-ZNF827-7:1	XLOC_004111	linc-OTUD4-2	SMAD1	NA	chr4:146380747-146400834	inter
CUST_34592_PI429285431	0.91047955	A	0.9023991	A	1.0056166557311	0	lncRNA	36050-1_{1..492}	n341476|L17325|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3946|NULL|-1.2000900|-0.3348201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341476|L17325|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3946|NULL|-1.2000900|-0.3348201	chr8	 30274917	 30275408	+	NA	NA	NA	NA	RBPMS	NA	chr8:30264917-30285420	inner
CUST_14111_PI429285431	1.1511968	A	0.9092974	A	1.18254853754251	0	lncRNA	15758-1_{1..765}	lnc-RP11-44L9.1.1-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-44L9.1.1-7:2	chr16	 73802144	 73802908	+	lnc-RP11-44L9.1.1-7	lnc-RP11-44L9.1.1-7:2	XLOC_011785	linc-PSMD7-5	NA	NA	NA	inter
CUST_29304_PI429285431	6.9635606	P	7.4284463	P	0.724528477020377	0	lncRNA	31055-1_{1..329}	n332475|EF587244|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000469199|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000469199|1.8895800|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332475|EF587244|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000469199|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000469199|1.8895800|-1.0000000	chr16	 28493653	 28493981	-	NA	NA	NA	NA	APOBR	NA	chr16:28505993-28509063	inner
CUST_7941_PI429285431	0.913213	A	0.904607	A	1.00598305201886	0	lncRNA	9553-1_{1..3000}	lnc-TUB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TUB-1:1	chr11	  8196844	  8199843	+	lnc-TUB-1	lnc-TUB-1:1	ENSG00000246820	RP11-379P15.1	RIC3	NA	chr11:8186844-8190590	inter
LNCA_21_P0012399	5.6934233	P	5.678898	P	1.01011902530033	0	lncRNA	TCONS_l2_00018863	NA	NA	NA	NA	XLOC_l2_009887	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009887), lincRNA [TCONS_l2_00018863]"	chr3:130548634-130548693	hs|3q22.1	Agilent_HUMAN_G3V2	TCONS_l2_00018863	TCONS_l2_00018863	chr3	130548634	130548693	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38534_PI429285431	1.0198482	A	1.0626619	A	0.970759819114095	0	lncRNA	39545-1_{1..3000}	n383215|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jfb.3||4.5579800|-0.3380341	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n383215|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jfb.3||4.5579800|-0.3380341	chr17	 62962667	 62965666	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33371_PI429285431	6.534294	P	6.6078377	P	0.950300899423189	0	lncRNA	34950-2_{3001..3842}	n340088|AK126491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2543|NULL|-0.8456580|-0.2794301	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340088|AK126491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2543|NULL|-0.8456580|-0.2794301	chr10	 80030098	 80030939	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22646_PI429285431	1.2707522	A	0.9197304	A	1.27546366456507	0	lncRNA	24232-1_{1..3000}	lnc-XKR7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-XKR7-1:1	chr20	 30586850	 30589849	+	lnc-XKR7-1	lnc-XKR7-1:1	ENSG00000260903.1	RP1-310O13.12	XKR7	NA	chr20:30576850-30586256	inter
CUST_50414_PI429285431	5.447546	P	5.562557	P	0.923375270317937	0	lncRNA	54118-1_{1..1028}	hg19_lincRNAsTranscripts_TCONS_l2_00030432 range=chrX:3823288-3838276 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030432 range=chrX:3823288-3838276 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	  3823288	  3824315	-	NA	NA	NA	NA	LOC729162	NA	chrX:3823728-3848276	inter
CUST_5230_PI429285431	1.2736797	A	1.0823332	A	1.14182891352464	0	lncRNA	5171-1_{1..2277}	"transcript_id ""ENST00000592096.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592096.1"" | genecode_v17"	chr15	 71121469	 71123745	-	ENSG00000267539.1	ENST00000592096.1	RP11-138H8.7	RP11-138H8.7-001	LARP6	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.92;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70chr15:71111469-71133745"	NA	inter
CUST_47204_PI429285431	8.607235	P	8.762087	P	0.898224513222459	0	lncRNA	51278-1_{1..1662}	"gi|206725513|ref|NR_024162.1| Homo sapiens FK506 binding protein 1A, 12kDa pseudogene 1 (FKBP1AP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|206725513|ref|NR_024162.1| Homo sapiens FK506 binding protein 1A, 12kDa pseudogene 1 (FKBP1AP1), non-coding RNA"	Chr19	 58336648	 58338309	-	2282	NR_024162.1	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00"	NA	inter
CUST_33838_PI429285431	0.9284105	A	1.4344416	A	0.704156933867794	0	lncRNA	35385-1_{1..1025}	n340625|CR592540|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3087|NULL|-1.0398300|-0.3041702	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340625|CR592540|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3087|NULL|-1.0398300|-0.3041702	chr17	 34215988	 34217012	-	NA	NA	NA	NA	CCL5	NA	chr17:34205988-34207377	inter
CUST_51919_PI429285431	0.9908055	A	0.9599308	A	1.02163134880764	0	lncRNA	55460-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00016674 range=chr20:54129021-54201563 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016674 range=chr20:54129021-54201563 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	 54132021	 54135020	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00"	NA	inter
CUST_13774_PI429285431	4.4308343	P	4.6925817	P	0.834077068742295	0	lncRNA	15417-1_{1..382}	lnc-C11orf74-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C11orf74-6:1	chr11	 38699899	 38700280	+	lnc-C11orf74-6	lnc-C11orf74-6:1	XLOC_009110	linc-API5-5	NA	NA	NA	inter
CUST_21748_PI429285431	1.0334828	A	0.90850484	A	1.09049107314529	0	lncRNA	23358-1_{1..463}	lnc-KCNG4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNG4-1:1	chr16	 84294255	 84294717	-	lnc-KCNG4-1	lnc-KCNG4-1:1	ENSG00000260858.1	RP11-558A11.1	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.00"	NA	inter
CUST_49851_PI429285431	0.96511	A	0.9154795	A	1.03499980793243	0	lncRNA	53603-2_{3001..4729}	hg19_lincRNAsTranscripts_TCONS_l2_00026658 range=chr7:65990896-66038537 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026658 range=chr7:65990896-66038537 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 65993896	 65995624	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.01;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90"	NA	inter
CUST_25752_PI429285431	1.9950618	A	1.8329253	A	1.11894296435749	0	lncRNA	27278-1_{1..2129}	lnc-PAXIP1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAXIP1-3:3	chr7	153754518	153756646	-	lnc-PAXIP1-3	lnc-PAXIP1-3:3	ENSG00000203335.3	AC006019.3	DPP6	NA	chr7:153744518-153766231	inner
CUST_36821_PI429285431	5.621825	P	4.2259784	P	2.63142923852827	0	lncRNA	37990-1_{1..3000}	n345298|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_847|NULL|-1.2884000|-0.3556274	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345298|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_847|NULL|-1.2884000|-0.3556274	chr15	 21932676	 21935675	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13891_PI429285431	2.2745779	A	1.8933291	A	1.30246878748082	0	lncRNA	15536-1_{1..1266}	lnc-THBS1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THBS1-1:6	chr15	 39784717	 39785982	+	lnc-THBS1-1	lnc-THBS1-1:6	XLOC_011217	linc-THBS1-1	NA	NA	NA	inter
CUST_4779_PI429285431	0.90638304	A	0.9227663	A	0.988708225624387	0	lncRNA	4723-1_{1..552}	"transcript_id ""ENST00000556116.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556116.1"" | genecode_v17"	chr14	 39308093	 39308644	-	ENSG00000259070.1	ENST00000556116.1	LINC00639	LINC00639-005	NA	NA	NA	inter
CUST_39707_PI429285431	10.469175	P	10.222862	P	1.18617181748346	0	lncRNA	40643-1_{1..609}	n405576|NR_002734|lncRNA|Homosapiens||RefGeneNoncode|NR_002734||5.2993200|-0.1442339	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405576|NR_002734|lncRNA|Homosapiens||RefGeneNoncode|NR_002734||5.2993200|-0.1442339	chr8	 67679631	 67680239	-	NA	NA	NA	NA	C8orf44-SGK3	NA	chr8:67669631-67690240	inner
CUST_5148_PI429285431	3.7082753	P	3.2823782	P	1.34340760396514	0	lncRNA	5088-1_{1..1147}	"transcript_id ""ENST00000558081.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558081.2"" | genecode_v17"	chr15	 38276967	 38278113	+	ENSG00000259225.2	ENST00000558081.2	RP11-1008C21.1	RP11-1008C21.1-003	NA	NA	NA	inter
CUST_21556_PI429285431	7.750695	P	7.5829215	P	1.12332352982315	0	lncRNA	23172-1_{1..879}	lnc-OR10V1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OR10V1-1:1	chr11	 59521753	 59522631	-	lnc-OR10V1-1	lnc-OR10V1-1:1	ENSG00000254477.1	AP000640.10	STX3	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00chr11:59516285-59532448"	NA	inter
CUST_19529_PI429285431	0.91698986	A	0.9852149	A	0.953810757969366	0	lncRNA	21185-1_{1..554}	lnc-GADL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GADL1-2:1	chr3	 29975333	 29975886	-	lnc-GADL1-2	lnc-GADL1-2:1	ENSG00000235593.1	RBMS3-AS1	RBMS3	NA	chr3:29965333-29985647	inner
CUST_8093_PI429285431	3.1088634	A	4.086908	P	0.507667355978562	0	lncRNA	9698-1_{1..2214}	lnc-RP11-809H16.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-809H16.2.1-2:1	chr15	 69387041	 69389254	+	lnc-RP11-809H16.2.1-2	lnc-RP11-809H16.2.1-2:1	ENSG00000212766	NCRNA00277	NA	NA	NA	inter
CUST_28415_PI429285431	0.91827816	A	0.92686546	A	0.994065416837191	0	lncRNA	30075-1_{1..2372}	n325738|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044770|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044770|-1.1316300|-0.3041315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325738|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044770|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044770|-1.1316300|-0.3041315	chr13	 44847068	 44849439	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_104_PI429285431	9.731009	P	10.190612	P	0.727186337852504	0	lncRNA	96-1_{1..696}	"transcript_id ""ENST00000601486.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601486.1"" | genecode_v17"	chr1	   320335	   321030	+	ENSG00000237094.6	ENST00000601486.1	RP4-669L17.10	RP4-669L17.10-006	LOC100288646	NA	chr1:327463-332097	inter
CUST_1999_PI429285431	4.5105085	P	4.1951942	P	1.24428269842217	0	lncRNA	1990-1_{1..2183}	"transcript_id ""ENST00000578387.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000578387.1"" | genecode_v17"	chr4	184018170	184020352	-	ENSG00000251359.3	ENST00000578387.1	WWC2-AS2	WWC2-AS2-001	WWC2	NA	chr4:184020463-184030352	inter
CUST_45795_PI429285431	7.27562	P	7.526233	P	0.840539194918053	0	lncRNA	50135-1_{1..821}	"gi|396080286|ref|NR_073039.1| Homo sapiens midkine (neurite growth-promoting factor 2) (MDK), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|396080286|ref|NR_073039.1| Homo sapiens midkine (neurite growth-promoting factor 2) (MDK), transcript variant 7, non-coding RNA"	Chr11	 46403205	 46404025	+	4192	NR_073039.1	NA	NA	NA	NA	NA	inter
CUST_44625_PI429285431	6.60138	P	6.8860197	P	0.820946607179655	0	lncRNA	49191-1_{1..2339}	"gi|224465144|ref|NR_027111.1| Homo sapiens uncharacterized LOC285629 (LOC285629), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224465144|ref|NR_027111.1| Homo sapiens uncharacterized LOC285629 (LOC285629), non-coding RNA"	Chr5	160358785	160361123	-	285629	NR_027111.1	NA	NA	NA	NA	NA	inter
CUST_18878_PI429285431	2.7922466	A	3.0791686	P	0.819648921152013	0	lncRNA	20572-1_{1..532}	lnc-PLCD1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLCD1-1:6	chr3	 37903192	 37903723	-	lnc-PLCD1-1	lnc-PLCD1-1:6	ENSG00000235257	AC093415.2	CTDSPL	NA	chr3:37903669-37913219	inter
CUST_39838_PI429285431	6.81112	P	6.7718825	P	1.02757058664892	0	lncRNA	40741-1_{1..1927}	n406442|NR_022014|lncRNA|Homosapiens||RefGeneNoncode|NR_022014||5.0716500|-0.2812696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406442|NR_022014|lncRNA|Homosapiens||RefGeneNoncode|NR_022014||5.0716500|-0.2812696	chr15	 45803333	 45805259	+	NA	NA	NA	NA	SLC30A4	"hg19_refFlat_SLC30A4:range=chr15:45777361-458145525'pad=0,hg19_refFlat_SLC30A4:range=chr15:45777361-458145525'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70chr15:45793333-45815002"	NA	inter
CUST_26921_PI429285431	0.89933324	A	0.89588577	A	1.00239246149002	0	lncRNA	28439-1_{1..207}	n323997|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053553|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053553|-0.8835830|-0.1413831	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323997|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053553|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053553|-0.8835830|-0.1413831	chr9	109229341	109229547	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8537_PI429285431	0.9075297	A	0.90716076	A	1.00025576242243	0	lncRNA	10096-1_{1..493}	lnc-MARCKS-5:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MARCKS-5:10	chr6	114556794	114557286	+	lnc-MARCKS-5	lnc-MARCKS-5:10	ENSG00000228624	RP3-399L15.3	NA	NA	NA	inter
CUST_17574_PI429285431	4.0573125	P	3.962	P	1.06829678514552	0	lncRNA	19302-2_{3001..6000}	lnc-NAP1L2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NAP1L2-1:5	chrX	 73064217	 73067216	-	lnc-NAP1L2-1	lnc-NAP1L2-1:5	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70"	NA	inter
CUST_1886_PI429285431	0.92099553	A	0.9251336	A	0.997135818064625	0	lncRNA	1876-1_{1..401}	"transcript_id ""ENST00000507332.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507332.1"" | genecode_v17"	chr4	132694720	132695120	+	ENSG00000251676.1	ENST00000507332.1	RP11-614F17.2	RP11-614F17.2-001	NA	NA	NA	inter
LNCA_21_P0009113	8.545566	P	7.8302283	P	1.64186749409623	0	lncRNA	TCONS_00024897	NA	NA	NA	NA	XLOC_011815	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011815), lincRNA [TCONS_00024897]"	chr16:86729990-86730049	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024897	TCONS_00024897	chr16	 86729990	 86730049	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2981_PI429285431	0.89822763	A	0.8925528	A	1.00394123874933	0	lncRNA	2960-1_{1..610}	"transcript_id ""ENST00000520024.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520024.1"" | genecode_v17"	chr8	  2584858	  2585467	+	ENSG00000253853.1	ENST00000520024.1	GS1-57L11.1	GS1-57L11.1-001	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-21.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30"	NA	inter
CUST_28801_PI429285431	2.705099	A	2.434946	A	1.20593571222311	0	lncRNA	30509-1_{1..548}	n326208|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092502|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092502|-0.7420280|-0.2513055	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326208|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092502|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092502|-0.7420280|-0.2513055	chr1	221063848	221064395	+	NA	NA	NA	NA	HLX	NA	chr1:221053848-221058401	inter
LNCA_21_P0004901	0.92457676	A	0.9127887	A	1.00820433313886	0	lncRNA	TCONS_00011864	NA	NA	NA	NA	XLOC_005355	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005355), lincRNA [TCONS_00011864]"	chr6:77698026-77698085	hs|6q14.1	Agilent_HUMAN_G3V2	TCONS_00011864	TCONS_00011864	chr6	 77698026	 77698085	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35977_PI429285431	5.9205523	P	6.1056743	P	0.879574692461783	0	lncRNA	37323-2_{3001..3256}	n344598|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_146|NULL|-1.3254200|-0.3153904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344598|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_146|NULL|-1.3254200|-0.3153904	chr16	 72463771	 72464026	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013222	4.0864363	P	3.4124086	P	1.59552111361161	0	lncRNA	TCONS_l2_00025956	NA	NA	NA	NA	XLOC_l2_013457	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013457), lincRNA [TCONS_l2_00025956]"	chr7:64559154-64568629	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025956	TCONS_l2_00025956	chr7	 64559154	 64568629	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_840_PI429285431	6.221412	P	6.512449	P	0.817314367010973	0	lncRNA	834-1_{1..366}	"transcript_id ""ENST00000565283.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565283.1"" | genecode_v17"	chr2	 36581892	 36582257	-	ENSG00000260025.1	ENST00000565283.1	RP11-490M8.1	RP11-490M8.1-001	CRIM1	NA	chr2:36583370-36592257	inter
LNCA_21_P0013482	3.183245	P	3.9522476	P	0.586823031577426	0	lncRNA	TCONS_l2_00027767	NA	NA	NA	NA	XLOC_l2_014209	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014209), lincRNA [TCONS_l2_00027767]"	chr8:55783654-55783713	hs|8q12.1	Agilent_HUMAN_G3V2	TCONS_l2_00027767	TCONS_l2_00027767	chr8	 55783654	 55783713	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33083_PI429285431	0.91866493	A	0.91615844	A	1.00173887657214	0	lncRNA	34687-1_{1..599}	n339771|CR625372|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2218|NULL|5.3385700|-0.1059271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339771|CR625372|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2218|NULL|5.3385700|-0.1059271	chr4	   716033	   716631	-	NA	NA	NA	NA	PCGF3	NA	chr4:706033-727823	inner
CUST_29261_PI429285431	6.7542486	P	7.020184	P	0.831659337007349	0	lncRNA	31012-1_{1..490}	n332361|EU588721|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000557809|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000557809|1.5274400|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332361|EU588721|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000557809|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000557809|1.5274400|-1.0000000	chr9	140063306	140063795	-	NA	NA	NA	NA	GRIN1	NA	chr9:140053306-140063214	inter
CUST_37420_PI429285431	4.30114	P	4.145506	P	1.11391102480212	0	lncRNA	38525-1_{1..257}	n345874|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1423|NULL|-1.2086500|-0.0659347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345874|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1423|NULL|-1.2086500|-0.0659347	chr15	 84782407	 84782663	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19068_PI429285431	1.2805637	A	1.7436088	A	0.725453425208179	0	lncRNA	20759-1_{1..566}	lnc-SMOC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMOC1-2:1	chr14	 70696735	 70697300	+	lnc-SMOC1-2	lnc-SMOC1-2:1	ENSG00000258422	RP11-486O13.2	NA	NA	NA	inter
CUST_52098_PI429285431	2.3719852	A	1.8152331	A	1.47095396837381	0	lncRNA	55624-1_{1..462}	hg19_lincRNAsTranscripts_TCONS_l2_00017562 range=chr22:17518139-17541619 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017562 range=chr22:17518139-17541619 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17518139	 17518600	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51903_PI429285431	1.4132441	A	1.3242282	A	1.0636443952962	0	lncRNA	55447-1_{1..2773}	hg19_lincRNAsTranscripts_TCONS_l2_00012753 range=chr19:57154544-57168862 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012753 range=chr19:57154544-57168862 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 57154544	 57157316	+	NA	NA	NA	NA	LOC147670	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chr19:57154527-57168614"	NA	inner
CUST_15674_PI429285431	1.0505601	A	0.9059223	A	1.10545308573898	0	lncRNA	17362-1_{1..501}	lnc-STARD6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STARD6-1:2	chr18	 51883914	 51884414	-	lnc-STARD6-1	lnc-STARD6-1:2	XLOC_012845	linc-STARD6-1	C18orf54	NA	chr18:51885171-51894114	inter
CUST_28857_PI429285431	3.6623416	P	3.3204587	P	1.26740964534281	0	lncRNA	30565-1_{1..748}	n326272|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099181|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099181|0.0879906|-0.0844925	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326272|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099181|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099181|0.0879906|-0.0844925	chr1	201046712	201047459	+	NA	NA	NA	NA	CACNA1S	"hg19_refFlat_CACNA1S:range=chr1:201008959-2010814675'pad=0,hg19_refFlat_CACNA1S:range=chr1:201008959-2010814675'pad=0 3'pad=0 strand=- repeatMasking=none,-96.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr1:201036712-201057664"	NA	inner
LNCA_19_P00316516	0.9279101	A	0.9215325	A	1.00443040079301	0	lncRNA	TCONS_00012989	NA	NA	NA	NA	XLOC_006037	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006037), lincRNA [TCONS_00012989]"	chr7:30586929-30586988	hs|7p14.3	Agilent_HUMAN_G3V2	TCONS_00012989	TCONS_00012989	chr7	 30586929	 30586988	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41438_PI429285431	5.9008384	P	6.0958586	P	0.873560664607609	0	lncRNA	42609-1_{1..69}	ENST00000581942 ncrna:miRNA chromosome:GRCh37:17:35391042:35391110:1 gene:ENSG00000266141 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581942 ncrna:miRNA chromosome:GRCh37:17:35391042:35391110:1 gene:ENSG00000266141 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 35391042	 35391110	+	ENSG00000266141	ENST00000581942	NA	NA	AATF	NA	chr17:35381042-35401110	inner
CUST_28937_PI429285431	2.1694942	A	1.3781803	A	1.73064989310795	0	lncRNA	30656-1_{1..399}	n326365|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046272|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046272|-1.3191000|-0.3000443	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326365|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046272|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046272|-1.3191000|-0.3000443	chr1	155468644	155469042	-	NA	NA	NA	NA	ASH1L	NA	chr1:155458644-155483550	inner
CUST_1953_PI429285431	1.4278709	A	2.398662	A	0.510226204237127	0	lncRNA	1946-1_{1..562}	"transcript_id ""ENST00000515232.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515232.1"" | genecode_v17"	chr4	153955363	153955924	+	ENSG00000249022.1	ENST00000515232.1	RP11-285C1.2	RP11-285C1.2-001	NA	NA	NA	inter
CUST_39133_PI429285431	0.906512	A	0.90834534	A	0.998730032639933	0	lncRNA	40109-1_{1..1351}	n385732|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004cqi.1||1.3194900|-0.2547927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385732|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004cqi.1||1.3194900|-0.2547927	chrX	  2527432	  2528782	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8544_PI429285431	4.4583707	P	4.8003154	P	0.788977082584253	0	lncRNA	10103-1_{1..801}	lnc-CCDC54-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC54-2:2	chr3	107045313	107046113	+	lnc-CCDC54-2	lnc-CCDC54-2:2	ENSG00000243701	XLOC_002746	CCDC54	NA	chr3:107046680-107055548	inter
CUST_29767_PI429285431	4.328827	P	2.4852636	A	3.58895392014874	0	lncRNA	31530-1_{1..1124}	n333461|BC022284|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090563|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090563|5.2288600|-0.2007583	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333461|BC022284|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090563|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090563|5.2288600|-0.2007583	chr10	 61566680	 61567803	-	NA	NA	NA	NA	CCDC6	NA	chr10:61556680-61666414	inner
CUST_4074_PI429285431	10.746124	P	10.767267	P	0.985451654084194	0	lncRNA	4035-1_{1..783}	"transcript_id ""ENST00000529841.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000529841.1"" | genecode_v17"	chr11	111639392	111640174	-	ENSG00000254990.1	ENST00000529841.1	RP11-108O10.2	RP11-108O10.2-002	ALG9	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60chr11:111652919-111659030"	NA	inter
CUST_45322_PI429285431	4.9768524	P	5.3898845	P	0.75104325255379	0	lncRNA	49764-1_{1..1915}	"gi|410170569|ref|XR_158845.2| PREDICTED: Homo sapiens uncharacterized protein PRO2852 (PRO2852), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170569|ref|XR_158845.2| PREDICTED: Homo sapiens uncharacterized protein PRO2852 (PRO2852), misc_RNA"	Chr9	 34186028	 34187942	+	114224	XR_158845.3	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.41;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40"	NA	inter
CUST_44623_PI429285431	1.1781404	A	0.91339594	A	1.20142322639086	0	lncRNA	49189-1_{1..2007}	"gi|336176022|ref|NR_038443.1| Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 3 (PPP1R2P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336176022|ref|NR_038443.1| Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 3 (PPP1R2P3), non-coding RNA"	Chr5	156277549	156279555	+	153743	NR_038443.1	NA	NA	NA	NA	NA	inter
CUST_8474_PI429285431	2.0424159	A	3.0785167	A	0.487643658283778	0	lncRNA	10039-2_{3001..4477}	lnc-CTU2-6:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CTU2-6:5	chr16	 88746373	 88747849	+	lnc-CTU2-6	lnc-CTU2-6:5	ENSG00000248168	AC138028.2	SNAI3	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SNAI3:range=chr16:88744856-887528145'pad=0,hg19_refFlat_SNAI3:range=chr16:88744856-887528145'pad=0 3'pad=0 strand=- repeatMasking=none,-96.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr16:88744090-88752882"	NA	inter
CUST_4879_PI429285431	1.5167749	A	1.9315338	A	0.750144846713724	0	lncRNA	4822-1_{1..2941}	"transcript_id ""ENST00000500016.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000500016.1"" | genecode_v17"	chr14	 71075515	 71078455	-	ENSG00000245466.1	ENST00000500016.1	CTD-2540L5.6	CTD-2540L5.6-001	MED6	NA	chr14:71065515-71067384	inter
CUST_37203_PI429285431	3.5296805	P	4.110086	P	0.668775777375549	0	lncRNA	38315-1_{1..2996}	n345636|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1185|NULL|-1.5640300|-0.3791837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345636|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1185|NULL|-1.5640300|-0.3791837	chr4	 68297684	 68300679	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20"	NA	inter
CUST_40435_PI429285431	6.9385924	P	7.1508074	P	0.863210907563973	0	lncRNA	41216-1_{1..3000}	n409328|NR_033683|lncRNA|Homosapiens||RefGeneNoncode|NR_033683||6.7538000|-0.1007668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409328|NR_033683|lncRNA|Homosapiens||RefGeneNoncode|NR_033683||6.7538000|-0.1007668	chr17	 79860776	 79863775	-	NA	NA	NA	NA	ANAPC11	NA	chr17:79850776-79858363	inter
CUST_51268_PI429285431	4.862111	P	4.4694858	P	1.31278003194273	0	lncRNA	54874-2_{3001..4881}	hg19_lincRNAsTranscripts_TCONS_l2_00008492 range=chr15:28992868-29004385 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008492 range=chr15:28992868-29004385 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28995868	 28997748	+	NA	NA	NA	NA	LOC653720	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30chr15:28982868-28983530"	NA	inter
CUST_12404_PI429285431	0.9332087	A	0.92884594	A	1.00302861179919	0	lncRNA	14016-2_{3001..3347}	lnc-POLR3G-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLR3G-1:2	chr5	 89712154	 89712500	+	lnc-POLR3G-1	lnc-POLR3G-1:2	XLOC_004467	linc-POLR3G-1	CETN3	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20chr5:89699154-89705603"	NA	inter
CUST_18979_PI429285431	1.0633559	A	1.4414783	A	0.769438327228659	0	lncRNA	20671-1_{1..411}	lnc-YY1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YY1-1:1	chr14	100757614	100758024	+	lnc-YY1-1	lnc-YY1-1:1	ENSG00000258504	RP11-638I2.6	SLC25A29	NA	chr14:100757453-100767896	inner
CUST_13019_PI429285431	5.3733377	P	5.6875253	P	0.804303776973693	0	lncRNA	14647-1_{1..527}	lnc-PGAP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PGAP2-1:1	chr11	  3876146	  3876672	+	lnc-PGAP2-1	lnc-PGAP2-1:1	XLOC_009035	linc-STIM1	STIM1	NA	chr11:3876933-3886629	inter
CUST_33381_PI429285431	1.2278621	A	1.0620955	A	1.12176198657645	0	lncRNA	34959-1_{1..1953}	n340098|CR625486|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2555|NULL|-0.9923430|-0.4428005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340098|CR625486|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2555|NULL|-0.9923430|-0.4428005	chr10	 87315240	 87317192	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28124_PI429285431	1.0795075	A	0.987126	A	1.06612862121034	0	lncRNA	29747-1_{1..1949}	n325398|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323831|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323831|-1.1727200|-0.2762253	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325398|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323831|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323831|-1.1727200|-0.2762253	chr2	 19031209	 19033157	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41500_PI429285431	0.90642655	A	0.91039824	A	0.997250820209605	0	lncRNA	42716-1_{1..76}	ENST00000583305 ncrna:miRNA chromosome:GRCh37:2:169439453:169439528:1 gene:ENSG00000265694 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583305 ncrna:miRNA chromosome:GRCh37:2:169439453:169439528:1 gene:ENSG00000265694 gene_biotype:miRNA transcript_biotype:miRNA	chr2	169439453	169439528	+	ENSG00000265694	ENST00000583305	NA	NA	CERS6	NA	chr2:169429453-169449528	inner
CUST_46598_PI429285431	1.9397736	A	1.1878588	A	1.68402645217859	0	lncRNA	50780-1_{1..855}	"gi|397139609|ref|XR_158889.1| PREDICTED: Homo sapiens uncharacterized LOC100996242 (LOC100996242), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139609|ref|XR_158889.1| PREDICTED: Homo sapiens uncharacterized LOC100996242 (LOC100996242), misc_RNA"	NA	NA	NA	NA	NA	XR_158889.1	NA	NA	NA	"hg19_refFlat_NPIP:range=chr16:15031300-150458825'pad=0,hg19_refFlat_NPIP:range=chr16:15031300-150458825'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_NPIPL3:range=chr16:21413605-214364195'pad=0,hg19_refFlat_NPIPL3:range=chr16:21413605-214364195'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_LOC100132247:range=chr16:22525123-225477065'pad=0,hg19_refFlat_LOC100132247:range=chr16:22525123-225477065'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30"	NA	Unknown
CUST_49788_PI429285431	6.515499	P	6.688651	P	0.886902857588789	0	lncRNA	53545-1_{1..1552}	hg19_lincRNAsTranscripts_TCONS_l2_00025905 range=chr7:57879404-57897184 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025905 range=chr7:57879404-57897184 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 57879404	 57880955	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16657_PI429285431	0.9723624	A	1.3733368	A	0.757346596607304	0	lncRNA	18359-1_{1..264}	lnc-AADAT-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AADAT-6:1	chr4	172577884	172578147	-	lnc-AADAT-6	lnc-AADAT-6:1	XLOC_004160	linc-AADAT-2	NA	NA	NA	inter
CUST_20938_PI429285431	0.92573357	A	0.9221599	A	1.00248014978041	0	lncRNA	22569-1_{1..386}	lnc-ODF4-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ODF4-2:3	chr17	  8284363	  8284748	+	lnc-ODF4-2	lnc-ODF4-2:3	ENSG00000265749.1	RP11-849F2.5	KRBA2	NA	chr17:8274363-8274858	inner
LNCA_21_P0003900	1.0318714	A	1.0123663	A	1.01361171226305	0	lncRNA	TCONS_00009112	NA	NA	NA	NA	XLOC_004054	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004054), lincRNA [TCONS_00009112]"	chr4:120038693-120038634	hs|4q26	Agilent_HUMAN_G3V2	TCONS_00009112	TCONS_00009112	chr4	120038634	120038693	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14288_PI429285431	5.1935754	P	5.8966	P	0.614283015735428	0	lncRNA	15948-1_{1..3000}	lnc-STAG2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STAG2-2:1	chrX	124457549	124460548	+	lnc-STAG2-2	lnc-STAG2-2:1	XLOC_008063	linc-CXorf64-2	LOC100129520	NA	chrX:124453969-124456950	inter
CUST_13989_PI429285431	0.8820532	A	0.90491253	A	0.984279989589121	0	lncRNA	15634-1_{1..208}	lnc-SYNCRIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYNCRIP-1:1	chr6	 86356964	 86357171	-	lnc-SYNCRIP-1	lnc-SYNCRIP-1:1	XLOC_005778	linc-SYNCRIP	SYNCRIP	NA	chr6:86346964-86353043	inter
CUST_32758_PI429285431	4.1804514	P	4.430725	P	0.840736958515927	0	lncRNA	34395-1_{1..714}	n339394|AF143326|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1826|NULL|-1.2763100|-0.3919819	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339394|AF143326|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1826|NULL|-1.2763100|-0.3919819	chr3	 71240668	 71241381	-	NA	NA	NA	NA	FOXP1	NA	chr3:71230668-71251371	inner
CUST_28210_PI429285431	2.7820477	A	2.6882484	A	1.06717686778815	0	lncRNA	29840-1_{1..1521}	n325494|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322403|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322403|-0.9189320|-0.3294659	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325494|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322403|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322403|-0.9189320|-0.3294659	chr2	   769836	   771356	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43125_PI429285431	1.2885383	A	0.916144	A	1.29449940309601	0	lncRNA	47939-2_{3001..4237}	ENST00000592718 havana:lincRNA chromosome:GRCh37:HG748_PATCH:77703348:77708399:1 gene:ENSG00000267719 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000592718 havana:lincRNA chromosome:GRCh37:HG748_PATCH:77703348:77708399:1 gene:ENSG00000267719 gene_biotype:lincRNA transcript_biotype:lincRNA	chrHG748_PATCH	 77706348	 77707584	+	ENSG00000267719	ENST00000592718	NA	NA	NA	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.86;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90"	NA	Unknown
CUST_23654_PI429285431	9.203841	P	9.193311	P	1.00732554126627	0	lncRNA	25220-1_{1..779}	lnc-CCDC64B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC64B-1:2	chr16	  3108997	  3109775	-	lnc-CCDC64B-1	lnc-CCDC64B-1:2	ENSG00000261971.1	RP11-473M20.7	IL32	"hg19_refFlat_MMP25:range=chr16:3096919-31090995'pad=0,hg19_refFlat_MMP25:range=chr16:3096919-31090995'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.70chr16:3115313-3119364"	NA	inner
CUST_48295_PI429285431	2.6463838	A	2.9314399	A	0.820709694436535	0	lncRNA	52153-1_{1..1604}	hg19_lincRNAsTranscripts_TCONS_l2_00000120 range=chr1:16973196-16976558 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000120 range=chr1:16973196-16976558 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16973196	 16974799	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1621_PI429285431	0.9937519	A	0.9268382	A	1.04747346682761	0	lncRNA	1607-1_{1..553}	"transcript_id ""ENST00000422271.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422271.1"" | genecode_v17"	chr3	194485967	194486519	-	ENSG00000230401.1	ENST00000422271.1	AC090505.4	AC090505.4-001	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20"	NA	inter
CUST_14378_PI429285431	1.4245962	A	1.5941364	A	0.889126008541184	0	lncRNA	16039-1_{1..536}	lnc-FBXW11-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXW11-2:3	chr5	171163018	171163553	-	lnc-FBXW11-2	lnc-FBXW11-2:3	XLOC_005081	linc-KCNMB1-2	C5orf50	NA	chr5:171153018-171173325	inter
CUST_16305_PI429285431	0.9195306	A	2.0331812	A	0.462123192265941	0	lncRNA	18011-1_{1..329}	lnc-NETO1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NETO1-1:10	chr18	 70837082	 70837410	-	lnc-NETO1-1	lnc-NETO1-1:10	XLOC_012877	linc-NETO1-3	NA	NA	NA	inter
CUST_49783_PI429285431	5.232089	P	5.6898336	P	0.728123662669719	0	lncRNA	53542-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026598 range=chr7:57283852-57290593 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026598 range=chr7:57283852-57290593 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 57283852	 57286851	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12260_PI429285431	3.0574343	P	2.9403293	A	1.08455634047349	0	lncRNA	13867-1_{1..1072}	lnc-C1QL4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1QL4-2:1	chr12	 49682852	 49683923	-	lnc-C1QL4-2	lnc-C1QL4-2:1	XLOC_010069	linc-TUBA1A-3	PRPH	NA	chr12:49688909-49692481	inter
CUST_7368_PI429285431	5.22907	P	5.594868	P	0.7760395044064	0	lncRNA	9013-2_{3001..4733}	lnc-ZFC3H1-6:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZFC3H1-6:6	chr12	 72650288	 72652020	-	lnc-ZFC3H1-6	lnc-ZFC3H1-6:6	ENSG00000236333	AC087886.1	NA	NA	NA	inter
CUST_37539_PI429285431	6.4382954	P	6.347342	P	1.06507380025258	0	lncRNA	38645-1_{1..573}	n346016|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1566|NULL|-1.3712400|-0.0682626	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346016|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1566|NULL|-1.3712400|-0.0682626	chr18	 74521224	 74521796	-	NA	NA	NA	NA	ZNF236	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70chr18:74536116-74544218"	NA	inter
CUST_3766_PI429285431	3.9798055	P	3.8348076	P	1.10572904380986	0	lncRNA	3734-1_{1..874}	"transcript_id ""ENST00000453889.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453889.1"" | genecode_v17"	chr10	 92214437	 92215310	+	ENSG00000224750.2	ENST00000453889.1	RP11-94M14.2	RP11-94M14.2-003	NA	NA	NA	inter
CUST_45904_PI429285431	5.7548804	P	4.722267	P	2.04572667120413	0	lncRNA	50215-1_{1..1155}	"gi|256773273|ref|NR_028383.1| Homo sapiens translocase of inner mitochondrial membrane 8 homolog B (yeast) (TIMM8B), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|256773273|ref|NR_028383.1| Homo sapiens translocase of inner mitochondrial membrane 8 homolog B (yeast) (TIMM8B), transcript variant 2, non-coding RNA"	Chr11	111955524	111956678	-	26521	NR_028383.1	NA	NA	NA	NA	NA	inter
CUST_47451_PI429285431	2.8540256	A	2.8829346	A	0.980161238427962	0	lncRNA	51483-1_{1..3000}	"gi|224177541|ref|NR_027006.1| Homo sapiens chromosome 14 open reading frame 166B pseudogene (LOC400891), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224177541|ref|NR_027006.1| Homo sapiens chromosome 14 open reading frame 166B pseudogene (LOC400891), non-coding RNA"	Chr22	 21400249	 21403248	+	400891	NR_027006.1	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40"	NA	inter
CUST_36799_PI429285431	1.0839283	A	1.1975865	A	0.924241515690012	0	lncRNA	37971-1_{1..1272}	n345278|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_827|NULL|-1.3336200|-0.3432479	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345278|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_827|NULL|-1.3336200|-0.3432479	chr14	 83115920	 83117191	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11275_PI429285431	0.9094846	A	0.9069555	A	1.00175457600469	0	lncRNA	12835-2_{3001..5425}	lnc-WDR27-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR27-1:1	chr6	169849128	169851552	-	lnc-WDR27-1	lnc-WDR27-1:1	XLOC_005939	linc-THBS2-3	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80"	NA	inter
CUST_7200_PI429285431	0.9355519	A	0.94317853	A	0.994727571220166	0	lncRNA	7555-1_{1..328}	"transcript_id ""ENST00000362550.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000362550.1"" | genecode_v17"	chr4	 15095391	 15095718	-	ENSG00000199420.1	ENST00000362550.1	RN7SKP170	RN7SKP170-201	NA	NA	NA	inter
CUST_4308_PI429285431	0.9898919	A	1.5439415	A	0.681105600438949	0	lncRNA	4263-1_{1..343}	"transcript_id ""ENST00000537732.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537732.1"" | genecode_v17"	chr12	 67980370	 67980712	-	ENSG00000256077.1	ENST00000537732.1	RP11-335O4.1	RP11-335O4.1-002	NA	NA	NA	inter
CUST_29847_PI429285431	3.1662538	A	2.5963259	A	1.48444938206398	0	lncRNA	31610-1_{1..341}	n333743|L06891|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191753|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191753|1.8124200|-0.1111436	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333743|L06891|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191753|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191753|1.8124200|-0.1111436	chr7	142250708	142251048	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50407_PI429285431	0.9084685	A	0.9079272	A	1.00037527096537	0	lncRNA	54111-1_{1..1258}	hg19_lincRNAsTranscripts_TCONS_l2_00030127 range=chrX:2530209-2535063 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030127 range=chrX:2530209-2535063 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	  2530209	  2531466	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37872_PI429285431	1.3506037	A	1.9188622	A	0.674430412882049	0	lncRNA	38964-1_{1..867}	n346408|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1958|NULL|-1.5991400|-0.2019990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346408|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1958|NULL|-1.5991400|-0.2019990	chr14	 56247431	 56248297	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002106	6.8043165	P	8.112339	M	0.403874090011484	0	lncRNA	ENST00000458351	NA	BC039470	NA	Hs.560928	XLOC_002335	NA	ENST00000458351	THC2607122	NA	"BROAD Institute lincRNA (XLOC_002335), lincRNA [TCONS_00003408]"	chr2:138636416-138636357	hs|2q22.1	Agilent_HUMAN_G3V2	ENST00000458351	ENST00000458351	chr2	138636357	138636416	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36826_PI429285431	0.914773	A	0.9939205	A	0.946616844931543	0	lncRNA	37994-1_{1..568}	n345302|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_851|NULL|-1.4295000|-0.1999837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345302|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_851|NULL|-1.4295000|-0.1999837	chr15	 47829759	 47830326	+	NA	NA	NA	NA	SEMA6D	NA	chr15:47819759-47851473	inner
CUST_42952_PI429285431	1.773084	A	2.7276158	A	0.516009023667995	0	lncRNA	46074-1_{1..82}	ENST00000364079 ncrna:snoRNA chromosome:GRCh37:15:25474114:25474195:1 gene:ENSG00000200949 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364079 ncrna:snoRNA chromosome:GRCh37:15:25474114:25474195:1 gene:ENSG00000200949 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 25474114	 25474195	+	ENSG00000200949	ENST00000364079	NA	NA	SNRPN	NA	chr15:25464114-25484195	inter
CUST_18716_PI429285431	9.663899	P	9.858688	P	0.873700668838572	0	lncRNA	20414-1_{1..392}	lnc-MYC-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYC-2:5	chr8	128951754	128952145	+	lnc-MYC-2	lnc-MYC-2:5	ENSG00000249859	PVT1	NA	NA	NA	inter
CUST_30813_PI429285431	0.9527138	A	0.920848	A	1.02233342837178	0	lncRNA	32600-1_{1..309}	n336740|Z75935|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328102|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328102|-1.3395900|-0.2632406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336740|Z75935|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328102|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328102|-1.3395900|-0.2632406	chr14	 22466180	 22466488	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31084_PI429285431	12.44653	P	12.086212	P	1.2837088225105	0	lncRNA	32875-1_{1..315}	n337362|DQ642691|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000392990|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000392990|1.1553000|-0.0913166	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337362|DQ642691|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000392990|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000392990|1.1553000|-0.0913166	chr3	123471324	123471638	-	NA	NA	NA	NA	MYLK	NA	chr3:123461324-123560330	inner
LNCA_21_P0004837	1.096649	A	0.92749095	A	1.12440209743104	0	lncRNA	TCONS_00011692	NA	NA	NA	NA	XLOC_005172	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005172), lincRNA [TCONS_00011692]"	chr6:11920918-11920977	hs|6p24.1	Agilent_HUMAN_G3V2	TCONS_00011692	TCONS_00011692	chr6	 11920918	 11920977	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34802_PI429285431	1.3257415	A	0.89321893	A	1.34959129196949	0	lncRNA	36238-1_{1..2077}	n341709|AK097597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4181|NULL|-1.1692400|-0.3694369	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341709|AK097597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4181|NULL|-1.1692400|-0.3694369	chr9	 82528574	 82530650	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14722_PI429285431	3.3604336	P	3.562613	P	0.869236463289814	0	lncRNA	16386-1_{1..469}	lnc-RP11-791J7.2.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-791J7.2.1-1:3	chr11	125462313	125462781	-	lnc-RP11-791J7.2.1-1	lnc-RP11-791J7.2.1-1:3	XLOC_009592	linc-FEZ1-2	STT3A	"hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90chr11:125462739-125472350"	NA	inter
CUST_10384_PI429285431	0.91501606	A	0.90209144	A	1.00899891284479	0	lncRNA	11912-2_{3001..3230}	lnc-SRD5A1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRD5A1-1:10	chr5	  6589341	  6589570	+	lnc-SRD5A1-1	lnc-SRD5A1-1:10	XLOC_004271	linc-SRD5A1	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.41;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60"	NA	inter
CUST_9809_PI429285431	0.92311996	A	0.9166946	A	1.00446365271988	0	lncRNA	11325-1_{1..544}	lnc-SKAP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SKAP2-1:2	chr7	 26656867	 26657410	-	lnc-SKAP2-1	lnc-SKAP2-1:2	XLOC_006389	linc-HNRNPA2B1-2	NA	NA	NA	inter
CUST_20139_PI429285431	0.9432274	A	1.0925206	A	0.901692108193382	0	lncRNA	21784-1_{1..887}	lnc-ZNF395-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF395-2:1	chr8	 28196543	 28197429	-	lnc-ZNF395-2	lnc-ZNF395-2:1	ENSG00000253690.1	RP11-380I10.4	PNOC	"hg19_refFlat_PNOC:range=chr8:28186675-281969615'pad=0,hg19_refFlat_PNOC:range=chr8:28186675-281969615'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.80chr8:28186543-28200868"	NA	inner
CUST_25504_PI429285431	3.7891707	P	3.82298	P	0.976837641922239	0	lncRNA	27034-1_{1..362}	lnc-HCRTR1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HCRTR1-2:1	chr1	 32125255	 32125616	+	lnc-HCRTR1-2	lnc-HCRTR1-2:1	ENSG00000235790.1	RP11-73M7.6	COL16A1	NA	chr1:32117848-32135539	inner
CUST_28293_PI429285431	7.2950835	P	7.156587	P	1.10075736716685	0	lncRNA	29935-1_{1..2545}	n325595|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257500|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257500|1.5509600|-0.3124008	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325595|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257500|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257500|1.5509600|-0.3124008	chr15	 82659067	 82661611	-	NA	NA	NA	NA	GOLGA6L9	"hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0,hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50chr15:82664415-82699726"	NA	inter
CUST_270_PI429201921	0.9981448	A	0.9839146	A	1.0099124288738	0	lncRNA	195-2_{3001..6000}	TC07002872.hg.1	 TCONS_l2_00026501-XLOC_l2_013772 // Broad TUCP // linc-NEUROD6-1 chr7:-:31455009-31456489 // chr7 // 100 // 100 // 0 // --- // 0///TCONS_l2_00027313-XLOC_l2_013772 // Broad TUCP // linc-NEUROD6-1 chr7:-:31454258-31460900 // chr7 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr7:-:31454258-31460900	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00027313-XLOC_l2_013772	linc-NEUROD6-1	chr7	 31454258	 31460900	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008369	0.9856038	A	0.92318773	A	1.04421303268704	0	lncRNA	TCONS_00022584	NA	NA	NA	NA	XLOC_010897	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010897), lincRNA [TCONS_00022584]"	chr14:88566401-88566460	hs|14q31.3	Agilent_HUMAN_G3V2	TCONS_00022584	TCONS_00022584	chr14	 88566401	 88566460	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27771_PI429285431	1.0683835	A	2.0897017	A	0.492665994353274	0	lncRNA	29356-1_{1..640}	n324991|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079228|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079228|-1.1696000|-0.2895880	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324991|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079228|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079228|-1.1696000|-0.2895880	chr20	 38093640	 38094279	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9383_PI429285431	2.797005	A	3.2287521	P	0.741363452242635	0	lncRNA	10886-1_{1..1809}	lnc-EPSTI1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPSTI1-1:1	chr13	 43436224	 43438032	-	lnc-EPSTI1-1	lnc-EPSTI1-1:1	XLOC_010584	linc-KIAA0564-2	NA	NA	NA	inter
CUST_50119_PI429285431	2.695515	A	1.6908228	A	2.00651535988799	0	lncRNA	53847-3_{6001..6143}	hg19_lincRNAsTranscripts_TCONS_l2_00028808 range=chr9:69067000-69111952 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028808 range=chr9:69067000-69111952 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69073000	 69073142	+	NA	NA	NA	NA	LOC100507370	"hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.71chr9:69065490-69089939"	NA	inter
CUST_23039_PI429285431	0.91667825	A	1.1013564	A	0.879845338215849	0	lncRNA	24610-1_{1..373}	lnc-CDK5R1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK5R1-4:1	chr17	 31013271	 31013643	+	lnc-CDK5R1-4	lnc-CDK5R1-4:1	ENSG00000264458.1	RP11-220C2.1	MYO1D	NA	chr17:31003271-31023502	inner
CUST_28009_PI429285431	0.9168381	A	1.006571	A	0.93969670819405	0	lncRNA	29619-1_{1..531}	n325265|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328289|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328289|-1.1502400|-0.3143307	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325265|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328289|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328289|-1.1502400|-0.3143307	chr2	 67294043	 67294573	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3605_PI429285431	6.9603815	P	6.8459396	P	1.08255618258917	0	lncRNA	3575-1_{1..1133}	"transcript_id ""ENST00000445427.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445427.1"" | genecode_v17"	chr10	  6622381	  6623513	+	ENSG00000237943.1	ENST00000445427.1	PRKCQ-AS1	PRKCQ-AS1-004	NA	NA	NA	inter
CUST_33346_PI429285431	2.2919223	A	2.0663116	A	1.16927210252446	0	lncRNA	34927-2_{3001..5316}	n340064|D87465|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2519|NULL|8.6420300|-0.1601822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340064|D87465|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2519|NULL|8.6420300|-0.1601822	chr10	 73821792	 73824107	-	NA	NA	NA	NA	ASCC1	NA	chr10:73856274-73858767	inner
CUST_7017_PI429285431	0.9290138	A	0.92893654	A	1.00005355398513	0	lncRNA	6964-1_{1..177}	"transcript_id ""ENST00000422160.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422160.1"" | genecode_v17"	chrX	  7975419	  7975595	+	ENSG00000230394.1	ENST00000422160.1	RP11-692P14.1	RP11-692P14.1-001	NA	NA	NA	inter
CUST_25838_PI429285431	3.3176563	A	0.89700836	A	5.35411430719854	0	lncRNA	27359-1_{1..674}	lnc-KREMEN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-KREMEN1-1:1	chr22	 29414152	 29414825	+	lnc-KREMEN1-1	lnc-KREMEN1-1:1	ENSG00000235786.1	ZNRF3-IT1	ZNRF3	NA	chr22:29404152-29424608	inner
CUST_40287_PI429285431	1.6914326	A	1.6992539	A	0.994593356748817	0	lncRNA	41092-1_{1..2610}	n408236|NR_028399|lncRNA|Homosapiens||RefGeneNoncode|NR_028399||4.0177700|-0.2134094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408236|NR_028399|lncRNA|Homosapiens||RefGeneNoncode|NR_028399||4.0177700|-0.2134094	chr1	231664398	231667007	+	NA	NA	NA	NA	DISC1	NA	chr1:231762561-231848307	inter
CUST_17498_PI429285431	4.2299175	P	4.7297287	P	0.707199323610496	0	lncRNA	19224-1_{1..3000}	lnc-ARFGEF2-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARFGEF2-2:9	chr20	 47132445	 47135444	+	lnc-ARFGEF2-2	lnc-ARFGEF2-2:9	XLOC_013553	linc-ARFGEF2-2	NA	NA	NA	inter
CUST_1779_PI429285431	0.9078934	A	0.9063382	A	1.00107856372717	0	lncRNA	1765-1_{1..420}	"transcript_id ""ENST00000508292.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508292.1"" | genecode_v17"	chr4	 59428330	 59428749	-	ENSG00000250078.1	ENST00000508292.1	RP11-577G20.2	RP11-577G20.2-001	NA	NA	NA	inter
CUST_15679_PI429285431	0.90367866	A	0.89668566	A	1.00485894480595	0	lncRNA	17365-1_{1..2586}	lnc-PENK-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PENK-2:5	chr8	 57472012	 57474597	-	lnc-PENK-2	lnc-PENK-2:5	XLOC_007087	linc-PENK-1	NA	NA	NA	inter
CUST_29502_PI429285431	5.3721747	P	2.693864	A	6.40105941569343	0	lncRNA	31260-1_{1..602}	n332933|AF086517|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067396|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067396|-1.1846800|-0.2766680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332933|AF086517|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067396|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067396|-1.1846800|-0.2766680	chr1	214522971	214523572	-	NA	NA	NA	NA	PTPN14	NA	chr1:214522039-214533573	inner
CUST_8092_PI429285431	1.3249671	A	0.9119771	A	1.33144238434904	0	lncRNA	9697-1_{1..594}	lnc-C8orf56-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C8orf56-1:1	chr8	104310577	104311170	-	lnc-C8orf56-1	lnc-C8orf56-1:1	ENSG00000247081	RP11-318M2.2	FZD6	NA	chr8:104310661-104321000	inner
CUST_10_PI429201921	0.9612277	A	0.94981796	A	1.00793998492513	0	lncRNA	10-1_{1..780}	TC01005896.hg.1	TCONS_00000653-XLOC_001068 // Rinn lincRNAs // linc-FCGR3B-2 chr1:-:161607437-161608218 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:161607437-161608218	NA	Affy_HUMAN_HTA2.0	TCONS_00000653-XLOC_001068	linc-FCGR3B-2	chr1	161607437	161608218	-	NA	NA	NA	NA	LOC100286914	NA	chr5:180755977-180765068	Unknown
LNCA_21_P0010023	8.529224	P	8.599485	P	0.952465670545036	0	lncRNA	THC2758301	NA	NA	NA	NA	XLOC_013694	NA	NA	THC2758301	NA	"BROAD Institute lincRNA (XLOC_013694), lincRNA [TCONS_00028345]"	chr20:023499337-023499278	hs|20p11.21	Agilent_HUMAN_G3V2	THC2758301	THC2758301	chr20	 23499278	 23499337	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49568_PI429285431	0.9181925	A	0.900923	A	1.01204223606318	0	lncRNA	53358-1_{1..230}	hg19_lincRNAsTranscripts_TCONS_l2_00024424 range=chr6:132929270-132929899 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024424 range=chr6:132929270-132929899 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	132929270	132929499	+	NA	NA	NA	NA	TAAR2	NA	chr6:132938289-132939899	inter
CUST_18759_PI429285431	3.4056141	P	4.2082963	P	0.573282362841358	0	lncRNA	20455-1_{1..895}	lnc-PLCD1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLCD1-1:3	chr3	 37903192	 37904086	-	lnc-PLCD1-1	lnc-PLCD1-1:3	ENSG00000235257	AC093415.2	CTDSPL	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ITGA9:range=chr3:37493866-378604805'pad=0,hg19_refFlat_ITGA9:range=chr3:37493866-378604805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90chr3:37903669-37913256"	NA	inter
CUST_24746_PI429285431	0.91134995	A	0.9049813	A	1.00442416966034	0	lncRNA	26291-1_{1..3000}	lnc-TEKT3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TEKT3-1:1	chr17	 15143744	 15146743	-	lnc-TEKT3-1	lnc-TEKT3-1:1	ENSG00000265308.1	RP11-849N15.2	PMP22	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20chr17:15133744-15157713"	NA	inner
CUST_16294_PI429285431	2.5700164	A	2.441586	A	1.09310379671513	0	lncRNA	18000-1_{1..332}	lnc-MRPS6-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPS6-2:3	chr21	 35734116	 35734447	+	lnc-MRPS6-2	lnc-MRPS6-2:3	XLOC_013925	linc-KCNE2-1	KCNE2	NA	chr21:35736323-35743440	inter
LNCA_19_P00322592	8.083448	P	8.100483	P	0.988261675832108	0	lncRNA	AK309717	NA	AK309717	NA	Hs.639087	XLOC_012826	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012826), lincRNA [TCONS_00026204]"	chr18:37442204-37442145	hs|18q12.3	Agilent_HUMAN_G3V2	AK309717	AK309717	chr18	 37442145	 37442204	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_411_PI429285431	1.692368	A	1.809318	A	0.92213507612524	0	lncRNA	403-1_{1..372}	"transcript_id ""ENST00000412492.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412492.1"" | genecode_v17"	chr1	143391526	143391897	+	ENSG00000238261.4	ENST00000412492.1	RP11-435B5.5	RP11-435B5.5-006	NA	NA	NA	inter
CUST_3211_PI429285431	0.91611826	A	0.9198461	A	0.997419393718462	0	lncRNA	3189-1_{1..544}	"transcript_id ""ENST00000522776.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522776.1"" | genecode_v17"	chr8	 83426803	 83427346	-	ENSG00000253503.1	ENST00000522776.1	RP11-653B10.1	RP11-653B10.1-001	NA	NA	NA	inter
LNCA_21_P0006997	0.9274748	A	0.9122977	A	1.01057549344765	0	lncRNA	TCONS_00018518	NA	NA	NA	NA	XLOC_008826	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008826), lincRNA [TCONS_00018518]"	chr10:54731822-54731763	hs|10q21.1	Agilent_HUMAN_G3V2	TCONS_00018518	TCONS_00018518	chr10	 54731763	 54731822	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26801_PI429285431	6.2915134	P	6.6344995	P	0.788407770128145	0	lncRNA	28311-1_{1..529}	n323867|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056936|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056936|-0.5476090|-0.1762070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323867|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056936|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056936|-0.5476090|-0.1762070	chrX	 62646546	 62647074	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3036_PI429285431	4.084983	P	4.139781	P	0.962729230901838	0	lncRNA	3015-1_{1..952}	"transcript_id ""ENST00000517573.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517573.1"" | genecode_v17"	chr8	 20831308	 20832259	+	ENSG00000253199.1	ENST00000517573.1	RP11-421P23.1	RP11-421P23.1-002	NA	NA	NA	inter
CUST_18896_PI429285431	0.909713	A	0.8985446	A	1.00777138665332	0	lncRNA	20588-1_{1..395}	lnc-AC114783.1.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC114783.1.1-1:4	chr2	127656793	127657187	+	lnc-AC114783.1.1-1	lnc-AC114783.1.1-1:4	ENSG00000237524	AC114783.1	LOC339760	NA	chr2:127646793-127659013	inter
CUST_30039_PI429285431	3.4050226	P	3.4606307	P	0.962188792345711	0	lncRNA	31808-1_{1..278}	n334529|U38443|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219589|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219589|-1.1821400|-0.2921162	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334529|U38443|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219589|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219589|-1.1821400|-0.2921162	chr12	 56733915	 56734192	+	NA	NA	NA	NA	PAN2	NA	chr12:56723915-56727837	inner
CUST_25069_PI429285431	1.3668463	A	1.4633445	A	0.935300458561355	0	lncRNA	26606-2_{3001..3088}	lnc-MGAT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-MGAT1-1:1	chr5	180214782	180214869	-	lnc-MGAT1-1	lnc-MGAT1-1:1	ENSG00000260841.1	CTC-205M6.5	MGAT1	NA	chr5:180217541-180224869	inter
CUST_3010_PI429285431	1.1983515	A	0.987835	A	1.15710236457814	0	lncRNA	2989-1_{1..241}	"transcript_id ""ENST00000443854.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443854.1"" | genecode_v17"	chr8	 11105135	 11105375	-	ENSG00000236827.1	ENST00000443854.1	LINC00529	LINC00529-001	NA	NA	NA	inter
CUST_18446_PI429285431	7.700819	P	7.9926944	P	0.816839535340265	0	lncRNA	20170-1_{1..1559}	lnc-ATAD5-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ATAD5-3:5	chr17	 29096890	 29098448	+	lnc-ATAD5-3	lnc-ATAD5-3:5	ENSG00000247185	SUZ12P	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30"	NA	inter
LNCA_21_P0004496	0.924864	A	1.4321612	A	0.703539241298514	0	lncRNA	TCONS_00010652	NA	NA	NA	NA	XLOC_004325	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004325), lincRNA [TCONS_00010652]"	chr5:29165086-29169720	hs|5p13.3	Agilent_HUMAN_G3V2	TCONS_00010652	TCONS_00010652	chr5	 29165086	 29169720	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26414_PI429285431	2.016712	A	2.343198	A	0.79747654900465	0	lncRNA	27921-1_{1..796}	lnc-NAALAD2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NAALAD2-1:3	chr11	 90596521	 90597316	+	lnc-NAALAD2-1	lnc-NAALAD2-1:3	ENSG00000261645.1	RP11-660M18.2	NA	NA	NA	inter
CUST_51867_PI429285431	8.187005	P	8.144761	P	1.02971422212413	0	lncRNA	55419-1_{1..840}	hg19_lincRNAsTranscripts_TCONS_l2_00012653 range=chr19:52205716-52208436 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012653 range=chr19:52205716-52208436 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 52205716	 52206555	+	NA	NA	NA	NA	HAS1	NA	chr19:52216365-52218436	inter
CUST_9154_PI429285431	0.9720472	A	0.9631165	A	1.00620948896388	0	lncRNA	10673-1_{1..318}	lnc-ZFC3H1-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZFC3H1-8:1	chr12	 73537533	 73537850	-	lnc-ZFC3H1-8	lnc-ZFC3H1-8:1	ENSG00000258294	RP11-314D7.1	NA	NA	NA	inter
CUST_9471_PI429285431	3.3581398	P	4.0161033	P	0.633772295172383	0	lncRNA	10977-1_{1..2301}	lnc-MAPK8IP2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAPK8IP2-1:4	chr22	 51035457	 51037757	+	lnc-MAPK8IP2-1	lnc-MAPK8IP2-1:4	XLOC_014288	linc-MAPK8IP2	MAPK8IP2	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40chr22:51039131-51045727"	NA	inter
CUST_33353_PI429285431	0.9469741	A	1.1224837	A	0.885454696639479	0	lncRNA	34934-1_{1..1242}	n340072|BC017721|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2527|NULL|-1.0640100|-0.2381622	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340072|BC017721|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2527|NULL|-1.0640100|-0.2381622	chr4	 66535678	 66536919	+	NA	NA	NA	NA	EPHA5	NA	chr4:66525678-66535653	inter
CUST_28663_PI429285431	0.9120674	A	0.90457326	A	1.0052080570364	0	lncRNA	30355-1_{1..1085}	n326042|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047265|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047265|-1.0900200|-0.3853174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326042|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047265|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047265|-1.0900200|-0.3853174	chr10	 26918799	 26919883	+	NA	NA	NA	NA	NA	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_15531_PI429285431	0.91031253	A	1.34584	A	0.739423361410887	0	lncRNA	17216-1_{1..369}	lnc-ARL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARL1-2:1	chr12	101824911	101825279	-	lnc-ARL1-2	lnc-ARL1-2:1	XLOC_010170	linc-ARL1-1	NA	NA	NA	inter
CUST_41916_PI429285431	0.9094125	A	1.0010078	A	0.938484420098359	0	lncRNA	43659-1_{1..83}	ENST00000577401 ncrna:miRNA chromosome:GRCh37:7:6731608:6731690:1 gene:ENSG00000265245 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577401 ncrna:miRNA chromosome:GRCh37:7:6731608:6731690:1 gene:ENSG00000265245 gene_biotype:miRNA transcript_biotype:miRNA	chr7	  6731608	  6731690	+	ENSG00000265245	ENST00000577401	NA	NA	ZNF12	"hg19_refFlat_ZNF12:range=chr7:6730479-67448045'pad=0,hg19_refFlat_ZNF12:range=chr7:6730479-67448045'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30chr7:6721608-6741690"	NA	inner
CUST_2431_PI429285431	9.198267	P	10.405425	P	0.433120991380661	0	lncRNA	2423-1_{1..457}	"transcript_id ""ENST00000520300.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520300.1"" | genecode_v17"	chr5	173001941	173002397	+	ENSG00000254164.1	ENST00000520300.1	CTB-33O18.2	CTB-33O18.2-001	NA	NA	NA	inter
CUST_25727_PI429285431	6.32486	P	6.387665	P	0.95740085529239	0	lncRNA	27254-1_{1..368}	lnc-RXRG-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RXRG-1:6	chr1	165496827	165497194	-	lnc-RXRG-1	lnc-RXRG-1:6	ENSG00000237463.1	RP11-280O1.2	NA	NA	NA	inter
CUST_19110_PI429285431	1.1604522	A	1.9981351	A	0.559541522534699	0	lncRNA	20796-1_{1..3000}	lnc-EGLN1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-EGLN1-3:1	NA	NA	     2999	NA	NA	NA	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_DISC1:range=chr1:231762614-2321446375'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321446375'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2319542715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319542715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_DISC1:range=chr1:231762614-2320946385'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2320946385'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_DISC1:range=chr1:231762614-2320023245'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2320023245'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_DISC1:range=chr1:231762614-2321449005'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321449005'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_DISC1:range=chr1:231762614-2319541255'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319541255'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50"	NA	Unknown
LNCA_21_P0010298	0.92588025	A	0.9176555	A	1.00571724368393	0	lncRNA	TCONS_00029173	NA	NA	NA	NA	XLOC_014112	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014112), lincRNA [TCONS_00029173]"	chr21:45593991-45593932	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029173	TCONS_00029173	chr21	 45593932	 45593991	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11279_PI429285431	1.966908	A	1.6753867	A	1.22393021327705	0	lncRNA	12839-1_{1..1112}	lnc-ZBED5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZBED5-1:2	chr11	 10920679	 10921790	-	lnc-ZBED5-1	lnc-ZBED5-1:2	XLOC_009372	linc-ZBED5-2	NA	NA	NA	inter
CUST_8337_PI429285431	7.393461	P	7.420274	P	0.981586287372574	0	lncRNA	9919-1_{1..716}	lnc-RP1L1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP1L1-5:1	chr8	  9762669	  9763384	-	lnc-RP1L1-5	lnc-RP1L1-5:1	ENSG00000253230	RP11-403C10.2	NA	NA	NA	inter
CUST_47385_PI429285431	3.383535	P	3.7998855	P	0.749317733452466	0	lncRNA	51433-1_{1..1681}	"gi|375151593|ref|NR_026719.2| Homo sapiens Down syndrome critical region gene 9 (non-protein coding) (DSCR9), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|375151593|ref|NR_026719.2| Homo sapiens Down syndrome critical region gene 9 (non-protein coding) (DSCR9), non-coding RNA"	Chr21	 38580804	 38582484	+	257203	NR_026719.2	NA	NA	NA	NA	NA	inter
CUST_8934_PI429285431	6.5410933	P	6.728175	P	0.878380724019971	0	lncRNA	10469-1_{1..1793}	lnc-ZNF605-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-ZNF605-1:1	chr12	133613355	133615147	-	lnc-ZNF605-1	lnc-ZNF605-1:1	ENSG00000246394	ENST00000443154	ZNF84	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00chr12:133609449-133623808"	NA	inter
CUST_35309_PI429285431	3.4081473	P	4.344833	P	0.522431683995308	0	lncRNA	36712-1_{1..1596}	n342332|CR606809|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4824|NULL|-1.0741300|-0.2033048	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342332|CR606809|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4824|NULL|-1.0741300|-0.2033048	chr14	 74034941	 74036536	-	NA	NA	NA	NA	ACOT2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ACOT1:range=chr14:74004126-740103595'pad=0,hg19_refFlat_ACOT1:range=chr14:74004126-740103595'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_ACOT4:range=chr14:74058664-740623585'pad=0,hg19_refFlat_ACOT4:range=chr14:74058664-740623585'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20;hg19_refFlat_ACOT2:range=chr14:74035945-740422175'pad=0,hg19_refFlat_ACOT2:range=chr14:74035945-740422175'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60chr14:74035772-74042359"	NA	inner
CUST_281_PI429201921	0.92543614	A	1.9761608	A	0.482725632384514	0	lncRNA	199-2_{3001..6000}	TC13001267.hg.1	 TCONS_l2_00006987-XLOC_l2_003840 // Broad TUCP // linc-DAOA-3 chr13:+:104073680-104080432 // chr13 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00006986-XLOC_l2_003840 // Broad TUCP // linc-DAOA-3 chr13:+:104073591-104080432 // chr13 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00007459-XLOC_l2_003840 // Broad TUCP // linc-DAOA-3 chr13:+:104077549-104080035 // chr13 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr13:+:104073591-104080432	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00006986-XLOC_l2_003840	linc-DAOA-3	chr13	104073591	104080432	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51909_PI429285431	11.549083	P	11.125215	P	1.34151947636844	0	lncRNA	55452-1_{1..944}	hg19_lincRNAsTranscripts_TCONS_l2_00013350 range=chr19:59086823-59110942 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013350 range=chr19:59086823-59110942 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 59086823	 59087766	+	NA	NA	NA	NA	MZF1	"hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90chr19:59076823-59084942"	NA	inter
LNCA_21_P0008104	9.684717	M	11.339866	M	0.31750495236958	0	lncRNA	TCONS_00021872	NA	NA	NA	NA	XLOC_010471	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010471), lincRNA [TCONS_00021872]"	chr13:93686389-93686448	hs|13q31.3	Agilent_HUMAN_G3V2	TCONS_00021872	TCONS_00021872	chr13	 93686389	 93686448	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38469_PI429285431	3.2462232	A	3.5073147	P	0.834456355779152	0	lncRNA	39488-1_{1..2492}	n382933|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dkp.2||3.1284100|-0.1326563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382933|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dkp.2||3.1284100|-0.1326563	chr16	 22430866	 22433357	-	NA	NA	NA	NA	NA	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_SMG1:range=chr16:18820891-189373635'pad=0,hg19_refFlat_SMG1:range=chr16:18820891-189373635'pad=0 3'pad=0 strand=- repeatMasking=none,-100.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30"	NA	inter
CUST_23195_PI429285431	0.9089655	A	0.90628284	A	1.00186120811709	0	lncRNA	24767-1_{1..2412}	lnc-CYS1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CYS1-3:2	chr2	 10144675	 10147086	-	lnc-CYS1-3	lnc-CYS1-3:2	ENSG00000188525.3	AC010969.1	GRHL1	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50chr2:10134675-10142412"	NA	inter
CUST_22586_PI429285431	6.3401814	P	6.3591404	P	0.986944593499653	0	lncRNA	24170-2_{3001..3939}	lnc-SP6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SP6-2:2	chr17	 45972220	 45973158	-	lnc-SP6-2	lnc-SP6-2:2	ENSG00000264920.1	RP11-6N17.4	SP2	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.30;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10chr17:45973516-45983158"	NA	inter
CUST_6493_PI429285431	1.5438293	A	2.1504996	A	0.656710624054259	0	lncRNA	6435-1_{1..554}	"transcript_id ""ENST00000433232.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433232.1"" | genecode_v17"	chr19	 37176342	 37176895	-	ENSG00000225975.2	ENST00000433232.1	AC074138.3	AC074138.3-001	ZNF567	NA	chr19:37180302-37188351	inter
CUST_22739_PI429285431	1.9423859	A	1.6912822	A	1.19011723810082	0	lncRNA	24322-1_{1..709}	lnc-PLOD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLOD2-1:1	chr3	145786606	145787314	-	lnc-PLOD2-1	lnc-PLOD2-1:1	ENSG00000240032.1	RP11-274H2.3	PLOD2	NA	chr3:145787227-145796972	inter
LNCA_21_P0004111	0.9519944	A	0.9303593	A	1.01510931739989	0	lncRNA	ENST00000507526	NA	NA	NA	NA	XLOC_004754	NA	ENST00000507526	NA	NA	"BROAD Institute lincRNA (XLOC_004754), lincRNA [TCONS_00009618]"	chr5:24352499-24352440	hs|5p14.2	Agilent_HUMAN_G3V2	ENST00000507526	ENST00000507526	chr5	 24352440	 24352499	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44881_PI429285431	8.622362	P	7.918709	P	1.62862335916373	0	lncRNA	49405-1_{1..1747}	"gi|229577404|ref|NR_027624.1| Homo sapiens basic leucine zipper and W2 domains 2 (BZW2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|229577404|ref|NR_027624.1| Homo sapiens basic leucine zipper and W2 domains 2 (BZW2), transcript variant 3, non-coding RNA"	Chr7	 16685759	 16687505	+	28969	NR_027624.1	NA	NA	NA	NA	NA	inter
CUST_21604_PI429285431	0.9266634	A	1.0276473	A	0.932396891620026	0	lncRNA	23217-1_{1..735}	lnc-IRX3-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRX3-4:3	chr16	 54962682	 54963416	-	lnc-IRX3-4	lnc-IRX3-4:3	ENSG00000245694.4	CRNDE	IRX5	NA	chr16:54965111-54968397	inter
CUST_19687_PI429285431	2.3321085	A	2.800087	A	0.722976921475008	0	lncRNA	21344-1_{1..503}	lnc-C4orf33-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C4orf33-1:2	chr4	130712740	130713242	+	lnc-C4orf33-1	lnc-C4orf33-1:2	ENSG00000249618.1	RP11-422J15.1	NA	NA	NA	inter
CUST_37988_PI429285431	6.3653307	P	6.3972077	P	0.978146863860602	0	lncRNA	39075-1_{1..1276}	n346543|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2093|NULL|-1.2604000|-0.2404679	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n346543|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2093|NULL|-1.2604000|-0.2404679	chr20	 48789088	 48790363	+	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40"	NA	inter
CUST_28228_PI429285431	0.9295848	A	0.93537706	A	0.995993160202116	0	lncRNA	29862-1_{1..462}	n325518|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000109585|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000109585|-1.0303800|-0.2162475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325518|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000109585|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000109585|-1.0303800|-0.2162475	chr19	 42434667	 42435128	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25103_PI429285431	1.4483703	A	1.8379885	A	0.763331588566863	0	lncRNA	26640-1_{1..325}	lnc-STAT6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STAT6-2:2	chr12	 57541222	 57541546	-	lnc-STAT6-2	lnc-STAT6-2:2	ENSG00000259125.1	RP11-545N8.3	LRP1	NA	chr12:57531222-57551312	inner
LNCA_21_P0007853	1.90843	A	2.2983265	A	0.763184353921482	0	lncRNA	TCONS_00021222	NA	NA	NA	NA	XLOC_009911	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009911), lincRNA [TCONS_00021222]"	chr12:121342799-121345504	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00021222	TCONS_00021222	chr12	121342799	121345504	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46911_PI429285431	6.093665	P	6.1343784	P	0.972174096999451	0	lncRNA	51028-3_{6001..9000}	"gi|225903381|ref|NR_027418.1| Homo sapiens long intergenic non-protein coding RNA 674 (LINC00674), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225903381|ref|NR_027418.1| Homo sapiens long intergenic non-protein coding RNA 674 (LINC00674), non-coding RNA"	NW_003871088.1	   167566	   170565	+	100499466	NR_027418.1	NA	NA	NA	"hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0,hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0,hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0,hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0,hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0,hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0,hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SH3GL1:range=chr19:4361597-44003655'pad=0,hg19_refFlat_SH3GL1:range=chr19:4361597-44003655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90"	NA	Unknown
CUST_14300_PI429285431	2.1839254	A	3.2621315	P	0.473617370609595	0	lncRNA	15960-1_{1..2677}	lnc-POLR2B-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-POLR2B-4:2	chr4	 58588287	 58590963	+	lnc-POLR2B-4	lnc-POLR2B-4:2	XLOC_003549	linc-LPHN3-6	NA	NA	NA	inter
CUST_19580_PI429285431	4.790537	P	5.136069	P	0.787017706889759	0	lncRNA	21236-1_{1..879}	lnc-MED31-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MED31-1:1	chr17	  6558210	  6559088	-	lnc-MED31-1	lnc-MED31-1:1	ENSG00000261996.1	CTC-281F24.1	MED31	NA	chr17:6548210-6554954	inter
CUST_21379_PI429285431	0.90985566	A	0.9075057	A	1.00163019547473	0	lncRNA	23001-1_{1..3000}	lnc-GCA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GCA-1:1	chr2	163025967	163028966	+	lnc-GCA-1	lnc-GCA-1:1	ENSG00000236841.1	AC007750.5	FAP	"hg19_refFlat_FAP:range=chr2:163027489-1630998375'pad=0,hg19_refFlat_FAP:range=chr2:163027489-1630998375'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00chr2:163027200-163039255"	NA	inner
CUST_14123_PI429285431	0.91825277	A	1.4890952	A	0.673223559562583	0	lncRNA	15773-1_{1..667}	lnc-MOXD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MOXD1-1:1	chr6	132454216	132454882	-	lnc-MOXD1-1	lnc-MOXD1-1:1	XLOC_005832	linc-CTGF	NA	NA	NA	inter
CUST_42813_PI429285431	0.958153	A	0.9282235	A	1.02096223325307	0	lncRNA	45819-1_{1..122}	ENST00000390922 ncrna:snoRNA chromosome:GRCh37:20:40341118:40341239:-1 gene:ENSG00000212224 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390922 ncrna:snoRNA chromosome:GRCh37:20:40341118:40341239:-1 gene:ENSG00000212224 gene_biotype:snoRNA transcript_biotype:snoRNA	chr20	 40341118	 40341239	-	ENSG00000212224	ENST00000390922	NA	NA	NA	NA	NA	inter
CUST_17222_PI429285431	0.9144212	A	1.0661583	A	0.900165950643742	0	lncRNA	18936-1_{1..775}	lnc-MYO3A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYO3A-2:1	chr10	 26171337	 26172111	+	lnc-MYO3A-2	lnc-MYO3A-2:1	XLOC_008417	linc-MYO3A-2	NA	NA	NA	inter
CUST_39747_PI429285431	1.1151004	A	2.2954352	A	0.441249087494992	0	lncRNA	40669-2_{3001..4414}	n405875|NR_003099|lncRNA|Homosapiens||RefGeneNoncode|NR_003099||7.6274800|-0.2633420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405875|NR_003099|lncRNA|Homosapiens||RefGeneNoncode|NR_003099||7.6274800|-0.2633420	chr7	 64366619	 64368032	+	NA	NA	NA	NA	ZNF273	NA	chr7:64363620-64391955	inter
CUST_31265_PI429285431	2.4988902	A	2.1261625	A	1.29479859035413	0	lncRNA	33055-1_{1..2281}	n337722|AK054627|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|104|NULL|-1.2161500|-0.3938545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337722|AK054627|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|104|NULL|-1.2161500|-0.3938545	chrX	 56312984	 56315264	+	NA	NA	NA	NA	KLF8	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30chrX:56302984-56314322"	NA	inner
LNCA_21_P0012176	5.0293493	P	5.1635556	P	0.911170977275894	0	lncRNA	TCONS_l2_00017086	NA	NA	NA	NA	XLOC_l2_009096	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009096), lincRNA [TCONS_l2_00017086]"	chr21:44857337-44857396	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_l2_00017086	TCONS_l2_00017086	chr21	 44857337	 44857396	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49906_PI429285431	6.5682287	P	6.6509104	P	0.944300736057784	0	lncRNA	53655-1_{1..220}	hg19_lincRNAsTranscripts_TCONS_l2_00026092 range=chr7:91125874-91144627 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026092 range=chr7:91125874-91144627 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 91125874	 91126093	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42485_PI429285431	2.001344	A	0.9583527	A	2.06049548163097	0	lncRNA	45245-1_{1..63}	ENST00000362392 ncrna:snoRNA chromosome:GRCh37:5:85916323:85916385:1 gene:ENSG00000199262 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362392 ncrna:snoRNA chromosome:GRCh37:5:85916323:85916385:1 gene:ENSG00000199262 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	 85916323	 85916385	+	ENSG00000199262	ENST00000362392	NA	NA	COX7C	NA	chr5:85913784-85916583	inter
CUST_38384_PI429285431	4.4928613	P	4.5853333	P	0.937914293129512	0	lncRNA	39423-1_{1..2039}	n382288|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ysb.1||5.5094200|-0.1017010	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382288|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ysb.1||5.5094200|-0.1017010	chr14	106134457	106136495	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51593_PI429285431	0.9148306	A	0.9101078	A	1.00327895956977	0	lncRNA	55157-1_{1..1407}	hg19_lincRNAsTranscripts_TCONS_l2_00010629 range=chr17:21792693-21813708 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010629 range=chr17:21792693-21813708 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 21792693	 21794099	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45822_PI429285431	8.4896965	P	8.962334	P	0.720645925385164	0	lncRNA	50156-1_{1..2102}	"gi|325910886|ref|NR_037949.1| Homo sapiens Berardinelli-Seip congenital lipodystrophy 2 (seipin) (BSCL2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|325910886|ref|NR_037949.1| Homo sapiens Berardinelli-Seip congenital lipodystrophy 2 (seipin) (BSCL2), transcript variant 5, non-coding RNA"	Chr11	 62457734	 62459835	-	26580	NR_037949.1	NA	NA	NA	NA	NA	inter
CUST_7755_PI429285431	4.8398623	P	4.7923045	P	1.03351390567477	0	lncRNA	9382-1_{1..767}	lnc-SWAP70-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SWAP70-1:5	chr11	  9829395	  9830161	+	lnc-SWAP70-1	lnc-SWAP70-1:5	ENSG00000246273	RP11-540A21.3	SBF2	"hg19_refFlat_SBF2:range=chr11:9801965-103156165'pad=0,hg19_refFlat_SBF2:range=chr11:9801965-103156165'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50chr11:9819395-9839926"	NA	inner
CUST_5091_PI429285431	2.292779	A	1.8132803	A	1.39425911242899	0	lncRNA	5031-1_{1..748}	"transcript_id ""ENST00000559621.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559621.1"" | genecode_v17"	chr15	 20964640	 20965387	-	ENSG00000259383.1	ENST00000559621.1	RP11-403B2.6	RP11-403B2.6-001	LOC100287326	NA	chr15:20978828-20980200	inter
CUST_2423_PI429285431	1.0421375	A	1.1957785	A	0.898978800519312	0	lncRNA	2415-1_{1..490}	"transcript_id ""ENST00000522292.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522292.1"" | genecode_v17"	chr5	166543323	166543812	-	ENSG00000253713.1	ENST00000522292.1	CTC-264O10.2	CTC-264O10.2-001	NA	NA	NA	inter
CUST_19745_PI429285431	0.95089513	A	1.3212062	A	0.773615673869115	0	lncRNA	21403-1_{1..446}	lnc-RP11-1105G2.3.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-1105G2.3.1-2:1	chr12	 94579718	 94580163	-	lnc-RP11-1105G2.3.1-2	lnc-RP11-1105G2.3.1-2:1	ENSG00000258035.1	RP11-74K11.2	PLXNC1	NA	chr12:94569718-94589820	inner
CUST_12876_PI429285431	0.9180577	A	1.0022923	A	0.943284848677414	0	lncRNA	14502-1_{1..552}	lnc-FOXJ2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXJ2-1:1	chr12	  8178956	  8179507	+	lnc-FOXJ2-1	lnc-FOXJ2-1:1	XLOC_009639	linc-FOXJ2-1	FOXJ2	NA	chr12:8168956-8189309	inter
CUST_49880_PI429285431	7.96145	P	7.777103	P	1.13630253776169	0	lncRNA	53631-1_{1..722}	hg19_lincRNAsTranscripts_TCONS_l2_00026051 range=chr7:76644856-76673095 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026051 range=chr7:76644856-76673095 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 76644856	 76645577	+	NA	NA	NA	NA	LOC100505767	NA	chr7:76682095-76683095	inter
CUST_34588_PI429285431	0.9894398	A	0.9303265	A	1.04182524405709	0	lncRNA	36046-1_{1..1426}	n341472|CR622363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3942|NULL|-1.0194500|-0.2053976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341472|CR622363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3942|NULL|-1.0194500|-0.2053976	chr8	 29444516	 29445941	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90"	NA	inter
CUST_32079_PI429285431	1.0241314	A	0.9780476	A	1.03245850485134	0	lncRNA	33786-1_{1..610}	n338641|BC047329|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1055|NULL|-0.4104940|-0.4629549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338641|BC047329|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1055|NULL|-0.4104940|-0.4629549	chr13	 33084428	 33085037	-	NA	NA	NA	NA	N4BP2L2	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-18.80chr13:33074428-33095024"	NA	inner
CUST_1416_PI429285431	0.9212363	A	0.9177883	A	1.002392829737	0	lncRNA	1405-1_{1..773}	"transcript_id ""ENST00000601383.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601383.1"" | genecode_v17"	chr3	107037227	107037999	-	ENSG00000239828.2	ENST00000601383.1	RP11-446H18.5	RP11-446H18.5-002	CCDC54	NA	chr3:107046680-107051591	inter
CUST_44092_PI429285431	2.330514	A	2.1506345	A	1.1327892659872	0	lncRNA	48759-1_{1..1628}	"gi|341916030|ref|XR_132703.1| PREDICTED: Homo sapiens uncharacterized LOC100128563 (LOC100128563), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341916030|ref|XR_132703.1| PREDICTED: Homo sapiens uncharacterized LOC100128563 (LOC100128563), misc_RNA"	NA	NA	NA	NA	NA	XR_132703.1	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80"	NA	Unknown
CUST_237_PI429201921	7.1553106	P	7.6639085	P	0.702905232671767	0	lncRNA	182-1_{1..3000}	TC22000970.hg.1	TCONS_00029362-XLOC_014156 // Rinn lincRNAs // linc-ZNF74-3 chr22:+:20186295-20192440 // chr22 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr22:+:20186295-20192440	NA	Affy_HUMAN_HTA2.0	TCONS_00029362-XLOC_014156	linc-ZNF74-3	chr22	 20186295	 20192440	+	NA	NA	NA	NA	ATPIF1	NA	chr1:28563655-28564616	Unknown
CUST_11398_PI429285431	0.9201705	A	0.9204464	A	0.999808778977954	0	lncRNA	12964-1_{1..268}	lnc-CD9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD9-2:1	chr12	  6282478	  6282745	+	lnc-CD9-2	lnc-CD9-2:1	XLOC_009630	linc-CD9-2	NA	NA	NA	inter
LNCA_21_P0006509	1.1405643	A	1.4834993	A	0.788435695884739	0	lncRNA	TCONS_00017226	NA	NA	NA	NA	XLOC_008041	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008041), lincRNA [TCONS_00017226]"	chrX:105252489-105253183	hs|Xq22.3	Agilent_HUMAN_G3V2	TCONS_00017226	TCONS_00017226	chrX	105252489	105253183	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46973_PI429285431	0.92437744	A	0.9233196	A	1.00073350769878	0	lncRNA	51076-1_{1..2714}	"gi|388596649|ref|NR_049896.1| Homo sapiens uncharacterized LOC497259 (C18orf61), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|388596649|ref|NR_049896.1| Homo sapiens uncharacterized LOC497259 (C18orf61), non-coding RNA"	Chr18	 12200778	 12203491	+	497259	NR_049896.1	NA	NA	NA	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50"	NA	inter
CUST_14271_PI429285431	1.0576204	A	1.3064941	A	0.84155315240124	0	lncRNA	15929-1_{1..457}	lnc-ZNF214-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF214-1:1	chr11	  7018167	  7018623	-	lnc-ZNF214-1	lnc-ZNF214-1:1	XLOC_009365	linc-OR2D2	ZNF214	NA	chr11:7020549-7028463	inter
CUST_9824_PI429285431	8.207039	P	8.030648	P	1.13005344077379	0	lncRNA	11342-1_{1..329}	lnc-LMX1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LMX1A-1:1	chr1	164881513	164881841	-	lnc-LMX1A-1	lnc-LMX1A-1:1	XLOC_001075	linc-RGS5-2	NA	NA	NA	inter
CUST_40314_PI429285431	6.2195954	P	5.4679127	P	1.6837555487033	0	lncRNA	41117-1_{1..2539}	n408349|NR_029423|lncRNA|Homosapiens||RefGeneNoncode|NR_029423||0.1186360|-0.2789775	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408349|NR_029423|lncRNA|Homosapiens||RefGeneNoncode|NR_029423||0.1186360|-0.2789775	chrX	 72744110	 72746648	-	NA	NA	NA	NA	CHIC1	NA	chrX:72755339-72792921	inter
LNCA_21_P0002423	0.9454893	A	2.231115	A	0.410192864277608	0	lncRNA	TCONS_00004212	NA	NA	NA	NA	XLOC_002054	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002054), lincRNA [TCONS_00004212]"	chr2:38767182-38767123	hs|2p22.1	Agilent_HUMAN_G3V2	TCONS_00004212	TCONS_00004212	chr2	 38767123	 38767182	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42749_PI429285431	4.4165735	P	3.8864486	P	1.44405420777963	0	lncRNA	45704-1_{1..131}	ENST00000410438 ncrna:snoRNA chromosome:GRCh37:1:220373888:220374018:-1 gene:ENSG00000222370 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410438 ncrna:snoRNA chromosome:GRCh37:1:220373888:220374018:-1 gene:ENSG00000222370 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	220373888	220374018	-	ENSG00000222370	ENST00000410438	NA	NA	RAB3GAP2	NA	chr1:220363888-220384018	inner
CUST_9801_PI429285431	5.662472	P	5.7219915	P	0.959583662376448	0	lncRNA	11318-1_{1..610}	lnc-ZNF30-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF30-3:3	chr19	 35339870	 35340479	+	lnc-ZNF30-3	lnc-ZNF30-3:3	XLOC_013045	linc-ZNF30-3	NA	NA	NA	inter
CUST_32571_PI429285431	4.9351506	P	5.5516243	P	0.652263272066463	0	lncRNA	34235-1_{1..457}	n339189|AF086443|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1620|NULL|-1.0061700|-0.2628881	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339189|AF086443|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1620|NULL|-1.0061700|-0.2628881	chr16	 31460855	 31461311	-	NA	NA	NA	NA	ARMC5	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40chr16:31470317-31474814"	NA	inter
CUST_17915_PI429285431	2.1292033	A	2.1231184	A	1.00422663842581	0	lncRNA	19646-1_{1..1410}	lnc-C14orf79-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-C14orf79-2:7	chr14	105565381	105566790	+	lnc-C14orf79-2	lnc-C14orf79-2:7	XLOC_010952	linc-BTBD6-1	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90"	NA	inter
CUST_51131_PI429285431	0.89777106	A	0.8937459	A	1.00279392405652	0	lncRNA	54762-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008356 range=chr14:39218545-39417475 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008356 range=chr14:39218545-39417475 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr14	 39218545	 39221544	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZFP41:range=chr8:144332014-1443326105'pad=0,hg19_refFlat_ZFP41:range=chr8:144332014-1443326105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80"	NA	inter
CUST_20716_PI429285431	3.5226998	P	2.9714694	A	1.46533487153215	0	lncRNA	22351-1_{1..593}	lnc-UTP11L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-UTP11L-1:1	chr1	 38571304	 38571896	+	lnc-UTP11L-1	lnc-UTP11L-1:1	ENSG00000224592.1	RP5-884C9.2	NA	NA	NA	inter
CUST_15079_PI429285431	8.033468	P	7.8864594	P	1.10727118498095	0	lncRNA	16743-1_{1..1037}	lnc-DCAF10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCAF10-2:1	chr9	 37904806	 37905842	+	lnc-DCAF10-2	lnc-DCAF10-2:1	XLOC_007348	linc-ALDH1B1-3	MCART1	NA	chr9:37894806-37904350	inter
LNCA_21_P0002801	0.9906238	A	0.92838407	A	1.04408540677307	0	lncRNA	ENST00000484765	XR_108509	XR_108509	NA	NA	XLOC_002912	NA	ENST00000484765	THC2637694	NA	"PREDICTED: Homo sapiens hypothetical LOC100507661 (LOC100507661), miscRNA [XR_108509]"	chr3:168639720-168639779	hs|3q26.2	Agilent_HUMAN_G3V2	ENST00000484765	ENST00000484765	chr3	168639720	168639779	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35248_PI429285431	5.3107233	P	3.8906977	P	2.67590259188597	0	lncRNA	36650-1_{1..3000}	n342249|AK026426|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4739|NULL|14.8719000|-0.3830765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342249|AK026426|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4739|NULL|14.8719000|-0.3830765	chrX	128582370	128585369	-	NA	NA	NA	NA	SMARCA1	NA	chrX:128580478-128657460	inner
CUST_50623_PI429285431	0.9191479	A	0.91822	A	1.00064337814783	0	lncRNA	54307-1_{1..748}	hg19_lincRNAsTranscripts_TCONS_l2_00002860 range=chr10:6368054-6370089 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002860 range=chr10:6368054-6370089 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	  6368054	  6368801	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29569_PI429285431	1.111104	A	1.4210804	A	0.806654954596535	0	lncRNA	31329-1_{1..416}	n333066|AF259968|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075258|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075258|1.2268600|-0.0898474	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333066|AF259968|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075258|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075258|1.2268600|-0.0898474	chr19	 51411687	 51412102	-	NA	NA	NA	NA	KLK4	NA	chr19:51409608-51413994	inner
CUST_33535_PI429285431	1.0788039	A	1.4678292	A	0.763645357101683	0	lncRNA	35103-1_{1..1558}	n340277|AK123211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2738|NULL|-1.0476500|-0.3040805	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340277|AK123211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2738|NULL|-1.0476500|-0.3040805	chr4	174245757	174247314	-	NA	NA	NA	NA	GALNT7	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr4:174235757-174245118"	NA	inter
CUST_24858_PI429285431	0.927562	A	1.1025101	A	0.885799384576243	0	lncRNA	26398-1_{1..397}	lnc-COL3A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COL3A1-1:1	chr2	189960562	189960958	+	lnc-COL3A1-1	lnc-COL3A1-1:1	ENSG00000228073.1	AC133106.2	COL5A2	NA	chr2:189950562-189970884	inner
CUST_49959_PI429285431	0.9164002	A	0.90535986	A	1.00768193637275	0	lncRNA	53708-1_{1..680}	hg19_lincRNAsTranscripts_TCONS_l2_00026919 range=chr7:138912162-138915171 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026919 range=chr7:138912162-138915171 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	138912162	138912841	-	NA	NA	NA	NA	UBN2	NA	chr7:138912224-138925171	inter
CUST_31994_PI429285431	0.9131442	A	0.90739363	A	1.00399394601128	0	lncRNA	33716-1_{1..2963}	n338553|AK091068|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|957|NULL|-0.9271550|-0.3062431	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338553|AK091068|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|957|NULL|-0.9271550|-0.3062431	chr1	230781445	230784407	+	NA	NA	NA	NA	COG2	NA	chr1:230778202-230794408	inner
CUST_35701_PI429285431	0.9253367	A	1.2562926	A	0.795009552263122	0	lncRNA	37121-1_{1..2072}	n342865|AK098218|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5369|NULL|-0.9035830|-0.1579849	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342865|AK098218|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5369|NULL|-0.9035830|-0.1579849	chr9	 70970080	 70972151	-	NA	NA	NA	NA	PGM5	NA	chr9:70971815-70982776	inner
CUST_45617_PI429285431	2.9368541	A	1.7087162	A	2.34264427338015	0	lncRNA	50002-1_{1..2723}	"gi|358248251|ref|NR_045564.1| Homo sapiens activating signal cointegrator 1 complex subunit 1 (ASCC1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|358248251|ref|NR_045564.1| Homo sapiens activating signal cointegrator 1 complex subunit 1 (ASCC1), transcript variant 5, non-coding RNA"	Chr10	 73855790	 73858512	-	51008	NR_045564.1	NA	NA	NA	NA	NA	inter
CUST_34114_PI429285431	4.655044	P	5.0031896	P	0.785593228846569	0	lncRNA	35637-1_{1..1258}	n340945|AJ251642|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3410|NULL|-0.7983950|-0.1492364	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340945|AJ251642|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3410|NULL|-0.7983950|-0.1492364	chr11	  2861364	  2862621	-	NA	NA	NA	NA	KCNQ1	NA	chr11:2851364-2870340	inter
CUST_18583_PI429285431	6.227766	P	6.844475	P	0.652156898211737	0	lncRNA	20290-1_{1..496}	lnc-HIC2-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HIC2-1:12	chr22	 21823783	 21824278	+	lnc-HIC2-1	lnc-HIC2-1:12	ENSG00000206140	KB-1323B2.6	TMEM191C	NA	chr22:21821459-21824224	inner
CUST_15041_PI429285431	6.367644	P	5.624966	P	1.67327897887495	0	lncRNA	16704-1_{1..1272}	lnc-UQCRFS1-9:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UQCRFS1-9:17	chr19	 28283908	 28285179	-	lnc-UQCRFS1-9	lnc-UQCRFS1-9:17	XLOC_013282	linc-ZNF681-4	NA	NA	NA	inter
CUST_32431_PI429285431	1.1966987	A	1.6713247	A	0.719653326627964	0	lncRNA	34106-1_{1..700}	n339028|CR598849|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1457|NULL|-1.2130700|-0.2152958	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339028|CR598849|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1457|NULL|-1.2130700|-0.2152958	chr2	177502437	177503136	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25729_PI429285431	6.2065477	P	6.2528453	P	0.968418402691229	0	lncRNA	27256-1_{1..522}	lnc-RNF13-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RNF13-2:3	chr3	149868298	149868819	+	lnc-RNF13-2	lnc-RNF13-2:3	ENSG00000243944.1	RP11-167H9.4	NA	NA	NA	inter
CUST_48696_PI429285431	8.013297	P	8.153098	P	0.907644343775397	0	lncRNA	52537-1_{1..1533}	hg19_lincRNAsTranscripts_TCONS_l2_00013897 range=chr2:112141166-112142811 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013897 range=chr2:112141166-112142811 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	112141166	112142698	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11465_PI429285431	6.1410227	P	5.724369	P	1.33482785693904	0	lncRNA	13030-1_{1..884}	lnc-ATAD5-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATAD5-3:3	chr17	 29085190	 29086073	+	lnc-ATAD5-3	lnc-ATAD5-3:3	XLOC_012162	linc-ATAD5-2	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50"	NA	inter
CUST_15152_PI429285431	4.416869	P	4.651196	P	0.850081459503974	0	lncRNA	16813-1_{1..641}	lnc-FAM120AOS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM120AOS-2:1	chr9	 96193393	 96194033	-	lnc-FAM120AOS-2	lnc-FAM120AOS-2:1	XLOC_007781	linc-C9orf129	NA	NA	NA	inter
CUST_38606_PI429285431	5.01602	P	5.484701	P	0.722624963758537	0	lncRNA	39612-2_{3001..3471}	n383718|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tji.1||0.3068400|-0.2549738	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383718|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tji.1||0.3068400|-0.2549738	chr2	113966502	113966972	+	NA	NA	NA	NA	PAX8	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80chr2:113973574-113976973"	NA	inter
CUST_34302_PI429285431	0.9425111	A	0.92144334	A	1.0147102040184	0	lncRNA	35798-1_{1..1749}	n341162|AK126597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3628|NULL|-0.9400140|-0.1866721	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341162|AK126597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3628|NULL|-0.9400140|-0.1866721	chr11	132641517	132643265	-	NA	NA	NA	NA	OPCML	NA	chr11:132631517-132653266	inner
CUST_17259_PI429285431	7.0844374	P	7.2599125	P	0.885475871282372	0	lncRNA	18977-1_{1..516}	lnc-DLGAP5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLGAP5-2:1	chr14	 55696061	 55696576	-	lnc-DLGAP5-2	lnc-DLGAP5-2:1	XLOC_011034	linc-DLGAP5-1	NA	"hg19_refFlat_UBE2L3:range=chr22:21922034-219759585'pad=0,hg19_refFlat_UBE2L3:range=chr22:21922034-219759585'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_UBE2L3:range=chr22:21903739-219759585'pad=0,hg19_refFlat_UBE2L3:range=chr22:21903739-219759585'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40"	NA	inter
CUST_51400_PI429285431	2.1021917	A	1.2309568	A	1.82922799015451	0	lncRNA	54981-1_{1..645}	hg19_lincRNAsTranscripts_TCONS_l2_00010169 range=chr16:53080976-53087097 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010169 range=chr16:53080976-53087097 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 53080976	 53081620	-	NA	NA	NA	NA	CHD9	NA	chr16:53070976-53097097	inter
CUST_46394_PI429285431	2.662525	A	2.505103	A	1.11529240309273	0	lncRNA	50611-1_{1..1785}	"gi|383209666|ref|NR_046470.2| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 13, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|383209666|ref|NR_046470.2| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 13, non-coding RNA"	Chr14	101292445	101294229	+	55384	NR_046470.2	NA	NA	NA	NA	NA	inter
CUST_42795_PI429285431	10.634436	P	10.560715	P	1.05242760809136	0	lncRNA	45787-1_{1..134}	ENST00000391324 ncrna:snoRNA chromosome:GRCh37:18:7301018:7301151:-1 gene:ENSG00000212626 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391324 ncrna:snoRNA chromosome:GRCh37:18:7301018:7301151:-1 gene:ENSG00000212626 gene_biotype:snoRNA transcript_biotype:snoRNA	chr18	  7301018	  7301151	-	ENSG00000212626	ENST00000391324	NA	NA	NA	NA	NA	inter
CUST_11438_PI429285431	2.7307446	A	2.5840862	A	1.10700243843468	0	lncRNA	13006-1_{1..205}	lnc-LRRC6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC6-2:1	chr8	133699708	133699912	-	lnc-LRRC6-2	lnc-LRRC6-2:1	XLOC_007224	linc-LRRC6	NA	NA	NA	inter
CUST_21750_PI429285431	0.9246001	A	0.91532874	A	1.00644711076705	0	lncRNA	23360-1_{1..666}	lnc-CNTLN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CNTLN-1:1	chr9	 17112271	 17112936	+	lnc-CNTLN-1	lnc-CNTLN-1:1	ENSG00000237153.1	RP11-132E11.2	CNTLN	NA	chr9:17108299-17122813	inter
CUST_13544_PI429285431	1.549743	A	2.4812982	A	0.524292858551885	0	lncRNA	15184-1_{1..929}	lnc-NR1D1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR1D1-1:1	chr17	 38278037	 38278965	-	lnc-NR1D1-1	lnc-NR1D1-1:1	XLOC_012467	linc-NR1D1-1	MSL1	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40chr17:38278790-38288125"	NA	inter
CUST_6552_PI429285431	1.9958978	A	2.989438	A	0.502243815775627	0	lncRNA	6500-1_{1..819}	"transcript_id ""ENST00000599784.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599784.1"" | genecode_v17"	chr19	 49467232	 49468050	+	ENSG00000267898.1	ENST00000599784.1	CTD-2639E6.9	CTD-2639E6.9-001	GYS1	NA	chr19:49471382-49478415	inter
LNCA_21_P0014061	7.4134483	P	7.527034	P	0.924287962923618	0	lncRNA	ENST00000445098	XR_108314	XR_108314	NA	Hs.591460	NCRNA00083	NA	ENST00000445098	THC2486670	NA	"PREDICTED: Homo sapiens non-protein coding RNA 83 (NCRNA00083), miscRNA [XR_108314]"	chr1:178463608-178463549	hs|1q25.2	Agilent_HUMAN_G3V2	ENST00000445098	ENST00000445098	chr1	178463549	178463608	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18821_PI429285431	5.358476	P	5.6584363	P	0.812274748178972	0	lncRNA	20515-1_{1..460}	lnc-EFR3B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EFR3B-3:1	chr2	 25195495	 25195954	+	lnc-EFR3B-3	lnc-EFR3B-3:1	ENSG00000224165	AC013267.2	DNAJC27	NA	chr2:25185495-25194963	inter
CUST_40561_PI429285431	0.9158197	A	0.9000626	A	1.01098185210676	0	lncRNA	41318-1_{1..876}	n409755|NR_034158|lncRNA|Homosapiens||RefGeneNoncode|NR_034158||2.0917700|-0.1260219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409755|NR_034158|lncRNA|Homosapiens||RefGeneNoncode|NR_034158||2.0917700|-0.1260219	chr3	126380923	126381798	+	NA	NA	NA	NA	TXNRD3	NA	chr3:126370923-126373967	inter
CUST_12516_PI429285431	0.9189991	A	0.92222315	A	0.997767754007522	0	lncRNA	14127-1_{1..1126}	lnc-RP11-167N24.6.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-167N24.6.1-1:2	chr12	 95774862	 95775987	-	lnc-RP11-167N24.6.1-1	lnc-RP11-167N24.6.1-1:2	XLOC_010163	linc-FGD6-3	NA	NA	NA	inter
CUST_51552_PI429285431	5.768445	P	6.045591	P	0.825221892253546	0	lncRNA	55117-1_{1..906}	hg19_lincRNAsTranscripts_TCONS_l2_00011109 range=chr17:15663747-15667118 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011109 range=chr17:15663747-15667118 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 15663747	 15664652	-	NA	NA	NA	NA	NA	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50"	NA	inter
CUST_30419_PI429285431	14.571815	P	14.60539	P	0.976996297520973	0	lncRNA	32199-1_{1..422}	n335553|CR407601|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267098|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267098|1.4344500|-0.1089310	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335553|CR407601|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267098|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267098|1.4344500|-0.1089310	chr2	176043019	176043440	-	NA	NA	NA	NA	ATP5G3	NA	chr2:176040986-176046490	inner
CUST_5612_PI429285431	4.6051683	P	4.2412686	P	1.28689977549276	0	lncRNA	5540-1_{1..577}	"transcript_id ""ENST00000557393.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557393.1"" | genecode_v17"	chr16	 73517216	 73517792	+	ENSG00000258582.1	ENST00000557393.1	RP11-44L9.1	RP11-44L9.1-001	NA	"hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20"	NA	inter
CUST_9709_PI429285431	0.9220672	A	0.9174738	A	1.00318897625959	0	lncRNA	11224-1_{1..789}	lnc-CADM2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CADM2-3:1	chr3	 84094756	 84095544	+	lnc-CADM2-3	lnc-CADM2-3:1	XLOC_002722	linc-CADM2-2	NA	NA	NA	inter
CUST_48973_PI429285431	0.9076015	A	0.9049514	A	1.00183859749467	0	lncRNA	52812-1_{1..1199}	hg19_lincRNAsTranscripts_TCONS_l2_00019075 range=chr3:194428745-194448606 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019075 range=chr3:194428745-194448606 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	194428745	194429943	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3429_PI429285431	0.91003	A	0.8972135	A	1.00892329819888	0	lncRNA	3400-1_{1..630}	"transcript_id ""ENST00000446984.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446984.2"" | genecode_v17"	chr9	 71012849	 71013478	-	ENSG00000233178.2	ENST00000446984.2	RP11-88I18.2	RP11-88I18.2-002	PGM5	NA	chr9:71002849-71031370	inner
CUST_3487_PI429285431	7.484967	P	7.471089	P	1.00966591264265	0	lncRNA	3458-1_{1..235}	"transcript_id ""ENST00000602703.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602703.1"" | genecode_v17"	chr9	 96928571	 96928805	+	ENSG00000269946.1	ENST00000602703.1	RP11-2B6.3	RP11-2B6.3-001	NA	NA	NA	inter
CUST_29467_PI429285431	1.578053	A	0.9057674	A	1.59359563405648	0	lncRNA	31225-1_{1..352}	n332882|AF086017|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066896|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066896|-1.4520200|-0.5293364	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332882|AF086017|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066896|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066896|-1.4520200|-0.5293364	chr8	 95805719	 95806070	+	NA	NA	NA	NA	DPY19L4	NA	chr8:95795719-95806076	inner
LNCA_21_P0007380	1.4875748	A	2.3911095	A	0.534575379796087	0	lncRNA	TCONS_00019719	NA	NA	NA	NA	XLOC_009516	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009516), lincRNA [TCONS_00019719]"	chr11:81532404-81532345	hs|11q14.1	Agilent_HUMAN_G3V2	TCONS_00019719	TCONS_00019719	chr11	 81532345	 81532404	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4216_PI429285431	1.5050417	A	2.2591627	A	0.592907519986794	0	lncRNA	4175-1_{1..564}	"transcript_id ""ENST00000551287.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551287.1"" | genecode_v17"	chr12	 30447380	 30447943	-	ENSG00000257756.1	ENST00000551287.1	RP11-776A13.3	RP11-776A13.3-003	NA	NA	NA	inter
CUST_18355_PI429285431	4.098432	P	2.4121368	A	3.21829193379445	0	lncRNA	20083-1_{1..2362}	lnc-NKAIN3-3:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKAIN3-3:16	chr8	 64122241	 64124602	+	lnc-NKAIN3-3	lnc-NKAIN3-3:16	ENSG00000185728	YTHDF3	YTHDF3	NA	chr8:64112241-64125346	inner
CUST_38931_PI429285431	2.0168808	A	1.2378299	A	1.71600160237052	0	lncRNA	39920-1_{1..1968}	n385045|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qtj.2||3.9554500|-0.1629477	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385045|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qtj.2||3.9554500|-0.1629477	chr6	160887586	160889553	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10734_PI429285431	8.712955	P	8.906657	P	0.874359207525496	0	lncRNA	12272-1_{1..252}	lnc-WRN-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRN-4:1	chr8	 31179393	 31179644	+	lnc-WRN-4	lnc-WRN-4:1	XLOC_006764	linc-NRG1-3	NA	NA	NA	inter
CUST_8300_PI429285431	5.685971	P	6.3653307	P	0.624442354300985	0	lncRNA	9885-1_{1..419}	lnc-POM121L4P-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-POM121L4P-1:9	chr22	 21058256	 21058674	+	lnc-POM121L4P-1	lnc-POM121L4P-1:9	ENSG00000226287	TMEM191A	PI4KA	NA	chr22:21061979-21068407	inter
CUST_11622_PI429285431	0.95789087	A	0.95947397	A	0.998903280535319	0	lncRNA	13201-1_{1..618}	lnc-CMPK2-13:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMPK2-13:6	chr2	  5831107	  5831724	-	lnc-CMPK2-13	lnc-CMPK2-13:6	XLOC_001958	linc-RNASEH1-2	SOX11	NA	chr2:5832799-5841306	inter
CUST_34508_PI429285431	4.03424	P	2.5749269	A	2.74977409441626	0	lncRNA	35972-1_{1..1268}	n341384|AK024566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3853|NULL|-0.5791170|-0.2521155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341384|AK024566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3853|NULL|-0.5791170|-0.2521155	chr8	   401916	   403183	-	NA	NA	NA	NA	FBXO25	NA	chr8:391916-413183	inner
LNCA_21_P0008678	5.307587	P	5.231917	P	1.05385033949999	0	lncRNA	TCONS_00023519	NA	NA	NA	NA	XLOC_011361	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011361), lincRNA [TCONS_00023519]"	chr15:94041901-94041960	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00023519	TCONS_00023519	chr15	 94041901	 94041960	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40499_PI429285431	1.296898	A	1.3395423	A	0.970873811582128	0	lncRNA	41264-1_{1..1609}	n409434|NR_033823_3|lncRNA|Homosapiens||RefGeneNoncode|NR_033823_3||-1.2261400|-0.3711596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409434|NR_033823_3|lncRNA|Homosapiens||RefGeneNoncode|NR_033823_3||-1.2261400|-0.3711596	chr6	  1926891	  1928499	+	NA	NA	NA	NA	GMDS	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90chr6:1916891-1956878"	NA	inner
CUST_2705_PI429285431	1.0793097	A	1.628577	A	0.683367101186145	0	lncRNA	2690-1_{1..532}	"transcript_id ""ENST00000580695.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580695.1"" | genecode_v17"	chr6	165957021	165957552	-	ENSG00000256956.2	ENST00000580695.1	RP11-252P19.3	RP11-252P19.3-002	PDE10A	NA	chr6:165947021-166075584	inter
CUST_13718_PI429285431	0.9247571	A	1.4146154	A	0.712095035594473	0	lncRNA	15357-1_{1..867}	lnc-ATOH8-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATOH8-2:4	chr2	 86130995	 86131861	+	lnc-ATOH8-2	lnc-ATOH8-2:4	XLOC_001558	linc-PTCD3-2	NA	NA	NA	inter
CUST_47411_PI429285431	2.4473457	A	2.8370726	A	0.763274077439731	0	lncRNA	51454-1_{1..1139}	"gi|224493768|ref|NR_027129.1| Homo sapiens chromosome 21 open reading frame 67 (C21orf67), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224493768|ref|NR_027129.1| Homo sapiens chromosome 21 open reading frame 67 (C21orf67), transcript variant 2, non-coding RNA"	Chr21	 46354640	 46355778	-	84536	NR_027129.1	NA	NA	NA	NA	NA	inter
CUST_45353_PI429285431	0.91265476	A	0.91484517	A	0.998482875482928	0	lncRNA	49790-1_{1..1718}	"gi|310120343|ref|XR_110790.1| PREDICTED: Homo sapiens uncharacterized LOC100126582 (LOC100126582), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120343|ref|XR_110790.1| PREDICTED: Homo sapiens uncharacterized LOC100126582 (LOC100126582), misc_RNA"	NA	NA	NA	NA	NA	XR_110790.1	NA	NA	NA	"hg19_refFlat_TIGD1:range=chr2:233412817-2334145925'pad=0,hg19_refFlat_TIGD1:range=chr2:233412817-2334145925'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70"	NA	Unknown
CUST_12286_PI429285431	6.510714	P	6.8874373	P	0.770184876774768	0	lncRNA	13895-1_{1..1254}	lnc-ZNF583-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF583-1:2	chr19	 56910263	 56911516	+	lnc-ZNF583-1	lnc-ZNF583-1:2	XLOC_013167	linc-ZNF583-1	ZNF583	NA	chr19:56915383-56920650	inter
CUST_47450_PI429285431	3.1553698	A	3.5981517	A	0.735714586468236	0	lncRNA	51482-1_{1..1964}	"gi|153070786|ref|NR_003608.1| Homo sapiens tubulin, alpha 3f, pseudogene (TUBA3FP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|153070786|ref|NR_003608.1| Homo sapiens tubulin, alpha 3f, pseudogene (TUBA3FP), non-coding RNA"	Chr22	 21362492	 21364455	-	113691	NR_003608.1	NA	NA	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40"	NA	inter
LNCA_21_P0005472	0.92678785	A	0.9194039	A	1.00513128430008	0	lncRNA	TCONS_00013699	NA	NA	NA	NA	XLOC_006357	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006357), lincRNA [TCONS_00013699]"	chr7:12907292-12907233	hs|7p21.3	Agilent_HUMAN_G3V2	TCONS_00013699	TCONS_00013699	chr7	 12907233	 12907292	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50462_PI429285431	11.718822	P	11.12267	P	1.5116791879838	0	lncRNA	54163-5_{12001..15000}	hg19_lincRNAsTranscripts_TCONS_l2_00030255 range=chrX:73207973-73230782 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030255 range=chrX:73207973-73230782 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 73219973	 73222972	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-19.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_30192_PI429285431	0.9149074	A	0.9798331	A	0.955994550844071	0	lncRNA	31966-1_{1..342}	n334954|AJ459855|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248112_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248112_05|-0.9098030|-0.1754827	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334954|AJ459855|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248112_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248112_05|-0.9098030|-0.1754827	chr6	   698901	   699242	-	NA	NA	NA	NA	EXOC2	NA	chr6:688901-693109	inter
CUST_43935_PI429285431	4.3391843	P	4.525338	P	0.87894591590717	0	lncRNA	48645-1_{1..3000}	"gi|310119016|ref|XR_109903.1| PREDICTED: Homo sapiens uncharacterized FLJ44006 (FLJ44006), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310119016|ref|XR_109903.1| PREDICTED: Homo sapiens uncharacterized FLJ44006 (FLJ44006), misc_RNA"	Chr2	111855922	111858921	-	400997	XR_109903.2	NA	NA	NA	NA	NA	inter
CUST_3209_PI429285431	0.91816604	A	0.91374856	A	1.00306665640666	0	lncRNA	3187-1_{1..823}	"transcript_id ""ENST00000520155.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520155.1"" | genecode_v17"	chr8	 83010686	 83011508	-	ENSG00000254123.1	ENST00000520155.1	RP11-99H20.1	RP11-99H20.1-001	NA	NA	NA	inter
CUST_7876_PI429285431	14.171611	P	13.076475	P	2.13633219440246	0	lncRNA	9497-1_{1..688}	lnc-SERPINC1-1:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:15	chr1	173836860	173837547	-	lnc-SERPINC1-1	lnc-SERPINC1-1:15	ENSG00000234741	GAS5	DARS2	NA	chr1:173826860-173827682	inter
CUST_7422_PI429285431	3.799397	P	3.9447038	P	0.904187074901899	0	lncRNA	9065-1_{1..556}	lnc-RALGAPB-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RALGAPB-1:8	chr20	 37078979	 37079534	+	lnc-RALGAPB-1	lnc-RALGAPB-1:8	ENSG00000174365	SNHG11	NA	NA	NA	inter
CUST_24664_PI429285431	0.91526514	A	0.9078146	A	1.00517767888454	0	lncRNA	26212-1_{1..453}	lnc-VGLL4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VGLL4-1:2	chr3	 11766297	 11766749	-	lnc-VGLL4-1	lnc-VGLL4-1:2	ENSG00000244030.1	AC090939.1	VGLL4	NA	chr3:11756297-11762220	inter
CUST_35968_PI429285431	1.5047228	A	0.9115383	A	1.5085729891955	0	lncRNA	37317-2_{3001..4051}	n344592|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_140|NULL|-1.3339400|-0.2506281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344592|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_140|NULL|-1.3339400|-0.2506281	chr6	 30808172	 30809222	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.71;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50"	NA	inter
CUST_10239_PI429285431	0.9005778	A	0.8962211	A	1.00302439861452	0	lncRNA	11763-1_{1..580}	lnc-LAMA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LAMA2-1:1	chr6	129015101	129015680	+	lnc-LAMA2-1	lnc-LAMA2-1:1	XLOC_005461	linc-LAMA2	NA	NA	NA	inter
CUST_3030_PI429285431	1.5442961	A	1.1390635	A	1.32430240520934	0	lncRNA	3009-1_{1..584}	"transcript_id ""ENST00000518687.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518687.1"" | genecode_v17"	chr8	 20525349	 20525932	-	ENSG00000253300.1	ENST00000518687.1	RP11-108E14.1	RP11-108E14.1-001	NA	NA	NA	inter
CUST_28107_PI429285431	1.6483418	A	1.4461137	A	1.15047377678175	0	lncRNA	29729-1_{1..539}	n325379|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324014|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324014|-0.9614780|-0.3132649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325379|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324014|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324014|-0.9614780|-0.3132649	chr2	 21706924	 21707462	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_32_P928190	0.961404	A	0.9353399	A	1.01823043948568	0	lncRNA	ENST00000519537	XR_132889	XR_132889	NA	NA	NA	NA	ENST00000519537	THC2655984	NA	"PREDICTED: Homo sapiens similar to hCG2045185 (LOC100130964), miscRNA [XR_132889]"	chr8:39437498-39437557	hs|8p11.22	Agilent_HUMAN_G3V2	ENST00000519537	ENST00000519537	chr8	 39437498	 39437557	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33340_PI429285431	5.3879795	P	5.277903	P	1.07928546491842	0	lncRNA	34922-1_{1..2261}	n340059|BC047424|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2514|NULL|0.4733940|-0.1959101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340059|BC047424|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2514|NULL|0.4733940|-0.1959101	chr10	 71897739	 71899999	-	NA	NA	NA	NA	AIFM2	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60chr10:71887739-71892690"	NA	inner
CUST_33982_PI429285431	6.7720647	P	6.624221	P	1.10791231135683	0	lncRNA	35519-1_{1..2210}	n340794|AK026706|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3257|NULL|-0.8294360|-0.3328366	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340794|AK026706|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3257|NULL|-0.8294360|-0.3328366	chr5	180682146	180684355	-	NA	NA	NA	NA	TRIM52	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90chr5:180683373-180688119"	NA	inner
CUST_23965_PI429285431	1.2819984	A	0.9241085	A	1.28155011828427	0	lncRNA	25520-1_{1..520}	lnc-XRN2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XRN2-1:2	chr20	 21380670	 21381189	+	lnc-XRN2-1	lnc-XRN2-1:2	ENSG00000225280.2	RP11-227D2.3	NKX2-4	NA	chr20:21376005-21378047	inter
CUST_19129_PI429285431	3.420956	A	3.5304437	P	0.926917151089307	0	lncRNA	20809-1_{1..1855}	lnc-DLK1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-DLK1-5:1	NA	NA	     1854	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47388_PI429285431	0.9764931	A	1.0832086	A	0.928699974231482	0	lncRNA	51436-1_{1..586}	"gi|223556003|ref|NR_026840.1| Homo sapiens Down syndrome critical region gene 8 (DSCR8), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223556003|ref|NR_026840.1| Homo sapiens Down syndrome critical region gene 8 (DSCR8), transcript variant 5, non-coding RNA"	Chr21	 39493545	 39494130	+	84677	NR_026840.1	NA	NA	NA	NA	NA	inter
CUST_28252_PI429285431	3.0908859	P	2.6333563	A	1.37318842350772	0	lncRNA	29887-1_{1..707}	n325544|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255408|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255408|0.0639218|-0.2442924	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325544|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255408|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255408|0.0639218|-0.2442924	chr17	 63609344	 63610050	+	NA	NA	NA	NA	CEP112	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60chr17:63631658-63633253"	NA	inter
LNCA_21_P0002519	1.1334639	A	0.96778446	A	1.12169421770043	0	lncRNA	TCONS_00004489	NA	NA	NA	NA	XLOC_002384	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002384), lincRNA [TCONS_00004489]"	chr2:169281204-169281145	hs|2q24.3	Agilent_HUMAN_G3V2	TCONS_00004489	TCONS_00004489	chr2	169281145	169281204	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21843_PI429285431	1.3081685	A	1.0636264	A	1.18471669155092	0	lncRNA	23453-1_{1..1779}	lnc-P4HA2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-P4HA2-2:2	chr5	131705109	131706887	-	lnc-P4HA2-2	lnc-P4HA2-2:2	ENSG00000233006.1	AC034220.3	SLC22A5	NA	chr5:131705401-131715340	inter
CUST_5059_PI429285431	3.9941003	P	4.428417	P	0.740044176883123	0	lncRNA	4999-1_{1..127}	"transcript_id ""ENST00000556653.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556653.1"" | genecode_v17"	chr14	104341392	104341518	+	ENSG00000258914.1	ENST00000556653.1	CTD-2134A5.3	CTD-2134A5.3-001	NA	NA	NA	inter
CUST_46895_PI429285431	0.9245471	A	0.9508712	A	0.981918983365306	0	lncRNA	51018-1_{1..3000}	"gi|387157886|ref|NR_048561.1| Homo sapiens protein phosphatase, Mg2+/Mn2+ dependent, 1E (PPM1E), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387157886|ref|NR_048561.1| Homo sapiens protein phosphatase, Mg2+/Mn2+ dependent, 1E (PPM1E), transcript variant 2, non-coding RNA"	Chr17	 56833230	 56836229	+	22843	NR_048561.1	NA	NA	NA	NA	NA	inter
CUST_16902_PI429285431	0.9161551	A	0.9116904	A	1.00309948772673	0	lncRNA	18611-1_{1..1522}	lnc-COL15A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL15A1-1:2	chr9	101678729	101680250	+	lnc-COL15A1-1	lnc-COL15A1-1:2	XLOC_007486	linc-COL15A1	NA	NA	NA	inter
CUST_10549_PI429285431	0.9226205	A	1.1260076	A	0.868509117885432	0	lncRNA	12079-1_{1..252}	lnc-ITGA6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITGA6-1:1	chr2	173188078	173188329	+	lnc-ITGA6-1	lnc-ITGA6-1:1	XLOC_001757	linc-ITGA6-1	NA	NA	NA	inter
CUST_34495_PI429285431	2.4975944	A	2.2551296	A	1.18301207554452	0	lncRNA	35962-1_{1..631}	n341372|AF107456|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3841|NULL|-0.9439580|-0.3040991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n341372|AF107456|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3841|NULL|-0.9439580|-0.3040991	chr7	156333184	156333814	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47647_PI429285431	7.6780105	P	6.037052	P	3.11872965700022	0	lncRNA	51632-2_{3001..3382}	"gi|403310712|ref|NR_073150.1| Homo sapiens RAP2C, member of RAS oncogene family (RAP2C), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|403310712|ref|NR_073150.1| Homo sapiens RAP2C, member of RAS oncogene family (RAP2C), transcript variant 4, non-coding RNA"	ChrX	131340052	131340433	-	57826	NR_073150.1	NA	NA	NA	NA	NA	inter
CUST_11860_PI429285431	1.2833384	A	1.1371155	A	1.10666832291411	0	lncRNA	13438-1_{1..1134}	lnc-KIAA0947-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA0947-1:1	chr5	  5694139	  5695272	+	lnc-KIAA0947-1	lnc-KIAA0947-1:1	XLOC_004270	linc-UBE2QL1	NA	NA	NA	inter
CUST_10278_PI429285431	1.1266389	A	0.92519236	A	1.14985069238165	0	lncRNA	11803-1_{1..319}	lnc-RUNX1T1-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RUNX1T1-4:5	chr8	 93473847	 93474165	-	lnc-RUNX1T1-4	lnc-RUNX1T1-4:5	XLOC_007155	linc-RUNX1T1-2	NA	NA	NA	inter
CUST_4524_PI429285431	4.026355	P	3.8210468	P	1.15293261913725	0	lncRNA	4472-1_{1..685}	"transcript_id ""ENST00000591364.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591364.1"" | genecode_v17"	chr12	131143313	131143997	+	ENSG00000256343.2	ENST00000591364.1	RP11-662M24.1	RP11-662M24.1-003	NA	NA	NA	inter
LNCA_21_P0002899	1.0283066	A	1.0072731	A	1.01468610775562	0	lncRNA	THC2738365	NA	NA	NA	NA	XLOC_003309	NA	NA	THC2738365	NA	"BROAD Institute lincRNA (XLOC_003309), lincRNA [TCONS_00005864]"	chr3:159924407-159924348	hs|3q25.33	Agilent_HUMAN_G3V2	THC2738365	THC2738365	chr3	159924348	159924407	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41535_PI429285431	0.90454304	A	0.90522707	A	0.999525978917591	0	lncRNA	42794-1_{1..68}	ENST00000579697 ncrna:miRNA chromosome:GRCh37:11:46774675:46774742:-1 gene:ENSG00000263540 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579697 ncrna:miRNA chromosome:GRCh37:11:46774675:46774742:-1 gene:ENSG00000263540 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 46774675	 46774742	-	ENSG00000263540	ENST00000579697	NA	NA	CKAP5	NA	chr11:46765084-46784742	inner
CUST_17096_PI429285431	4.6119847	P	5.0896525	P	0.718137597146741	0	lncRNA	18804-1_{1..269}	lnc-CDX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDX2-1:1	chr13	 28528428	 28528696	-	lnc-CDX2-1	lnc-CDX2-1:1	XLOC_010548	linc-LNX2-2	CDX2	NA	chr13:28536278-28538466	inter
CUST_7272_PI429285431	5.0078773	P	5.213108	P	0.867399970952099	0	lncRNA	8114-1_{1..154}	"transcript_id ""ENST00000516141.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516141.1"" | genecode_v17"	chr10	 52345310	 52345463	-	ENSG00000251950.1	ENST00000516141.1	RMRPP4	RMRPP4-201	SGMS1	NA	chr10:52335310-52355463	inner
CUST_19195_PI429285431	8.200358	P	8.312169	P	0.925425655315738	0	lncRNA	20865-1_{1..296}	lnc-BOLA2B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BOLA2B-1:2	chr16	 30195825	 30196120	-	lnc-BOLA2B-1	lnc-BOLA2B-1:2	ENSG00000261416.1	RP11-455F5.5	CORO1A	NA	chr16:30194731-30200397	inner
CUST_51594_PI429285431	4.006044	P	4.576326	P	0.673485131107723	0	lncRNA	55158-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00010630 range=chr17:21902096-21906135 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010630 range=chr17:21902096-21906135 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 21902096	 21905095	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27165_PI429285431	7.8718596	P	8.162623	P	0.817469381348561	0	lncRNA	28704-1_{1..603}	n324293|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000105434|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000105434|-0.9072720|-0.2816232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324293|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000105434|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000105434|-0.9072720|-0.2816232	chr6	169300280	169300882	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_575_PI429285431	5.993514	P	6.3802347	P	0.764866199651488	0	lncRNA	567-1_{1..962}	"transcript_id ""ENST00000431347.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431347.1"" | genecode_v17"	chr1	221002597	221003558	+	ENSG00000238078.1	ENST00000431347.1	RP11-295M18.2	RP11-295M18.2-001	NA	NA	NA	inter
LNCA_21_P0004674	1.0468024	A	1.0351156	A	1.00813357169227	0	lncRNA	ENST00000419801	NA	NA	NA	NA	XLOC_005420	NA	ENST00000419801	NA	NA	"BROAD Institute lincRNA (XLOC_005420), lincRNA [TCONS_00011350]"	chr6:108597691-108597750	hs|6q21	Agilent_HUMAN_G3V2	ENST00000419801	ENST00000419801	chr6	108597691	108597750	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35628_PI429285431	4.415075	P	4.5176415	P	0.931374636589974	0	lncRNA	37043-1_{1..1025}	n342772|AB126077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5275|NULL|0.9690880|-0.1278434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342772|AB126077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5275|NULL|0.9690880|-0.1278434	chr11	 71249070	 71250094	+	NA	NA	NA	NA	KRTAP5-7	NA	chr11:71239070-71239210	inner
CUST_13874_PI429285431	1.0878592	A	1.5601859	A	0.720801190964282	0	lncRNA	15519-1_{1..1498}	lnc-RP11-521M14.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-521M14.2.1-1:1	chr8	 27067559	 27069056	+	lnc-RP11-521M14.2.1-1	lnc-RP11-521M14.2.1-1:1	XLOC_006745	linc-PTK2B	NA	NA	NA	inter
LNCA_21_P0010851	0.92895025	A	2.1694942	A	0.423213058940948	0	lncRNA	TCONS_l2_00003355	NA	NA	NA	NA	XLOC_l2_001826	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001826), lincRNA [TCONS_l2_00003355]"	chr10:3274544-3274485	hs|10p15.2	Agilent_HUMAN_G3V2	TCONS_l2_00003355	TCONS_l2_00003355	chr10	  3274485	  3274544	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46037_PI429285431	1.0024796	A	1.5268073	A	0.695283038316587	0	lncRNA	50315-1_{1..3000}	"gi|227497577|ref|NR_027499.1| Homo sapiens BCDIN3D antisense RNA 1 (BCDIN3D-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|227497577|ref|NR_027499.1| Homo sapiens BCDIN3D antisense RNA 1 (BCDIN3D-AS1), transcript variant 1, non-coding RNA"	Chr12	 50222326	 50225325	+	100286844	NR_027499.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_BCDIN3D:range=chr12:50232154-502368705'pad=0,hg19_refFlat_BCDIN3D:range=chr12:50232154-502368705'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70"	NA	inter
CUST_32826_PI429285431	2.4761558	A	0.8993499	A	2.98308668229562	0	lncRNA	34461-1_{1..567}	n339475|AF308293|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1915|NULL|-1.1501200|-0.3491157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339475|AF308293|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1915|NULL|-1.1501200|-0.3491157	chr21	 36089936	 36090502	-	NA	NA	NA	NA	CLIC6	NA	chr21:36079936-36090519	inner
CUST_13627_PI429285431	1.6462504	A	0.97305405	A	1.59460196276164	0	lncRNA	15267-1_{1..585}	lnc-LRRTM3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRTM3-1:2	chr10	 67397628	 67398212	+	lnc-LRRTM3-1	lnc-LRRTM3-1:2	XLOC_008501	linc-LRRTM3-2	NA	NA	NA	inter
CUST_12391_PI429285431	0.9101205	A	0.9027687	A	1.00510888551877	0	lncRNA	14004-1_{1..1297}	lnc-IRX4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRX4-2:1	chr5	  1930518	  1931814	-	lnc-IRX4-2	lnc-IRX4-2:1	XLOC_004707	linc-IRX4-1	NA	NA	NA	inter
CUST_28808_PI429285431	1.2405245	A	0.9001657	A	1.26607142831294	0	lncRNA	30516-1_{1..562}	n326220|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091113|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091113|-1.4294400|-0.3617266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326220|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091113|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091113|-1.4294400|-0.3617266	chr1	220281669	220282230	-	NA	NA	NA	NA	IARS2	"hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_IARS2:range=chr1:220267559-2203209775'pad=0,hg19_refFlat_IARS2:range=chr1:220267559-2203209775'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-64.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30chr1:220271669-220314728"	NA	inter
CUST_4997_PI429285431	6.6430397	P	6.712415	P	0.953050588233654	0	lncRNA	4941-1_{1..722}	"transcript_id ""ENST00000557546.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557546.1"" | genecode_v17"	chr14	101142267	101142988	-	ENSG00000258717.1	ENST00000557546.1	RP11-566J3.2	RP11-566J3.2-001	NA	NA	NA	inter
CUST_7567_PI429285431	1.8934705	A	1.774221	A	1.08616968250601	0	lncRNA	9203-1_{1..3000}	lnc-SOX2-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SOX2-1:9	chr3	181457357	181460356	+	lnc-SOX2-1	lnc-SOX2-1:9	ENSG00000242808	RP11-4B14.2	NA	NA	NA	inter
CUST_44478_PI429285431	7.3783016	P	8.5603	P	0.440740567750245	0	lncRNA	49081-2_{3001..3855}	"gi|397139081|ref|XR_108569.2| PREDICTED: Homo sapiens uncharacterized LOC100288152 (LOC100288152), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139081|ref|XR_108569.2| PREDICTED: Homo sapiens uncharacterized LOC100288152 (LOC100288152), misc_RNA"	Chr5	   480404	   481258	+	100288152	XR_108569.3	NA	NA	NA	"hg19_refFlat_SLC9A3:range=chr5:473494-5244375'pad=0,hg19_refFlat_SLC9A3:range=chr5:473494-5244375'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90"	NA	inter
CUST_61_PI429201921	1.6247776	A	2.631129	A	0.497803610798472	0	lncRNA	63-1_{1..1824}	TC11003153.hg.1	TCONS_l2_00004998-XLOC_l2_002646 // Broad TUCP // linc-OR4C45-1 chr11:-:49007279-49009104 // chr11 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr11:-:49007279-49009104	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00004998-XLOC_l2_002646	linc-OR4C45-1	chr11	 49007279	 49009104	-	NA	NA	NA	NA	TBC1D29	NA	chr17:28890490-28890511	Unknown
CUST_14172_PI429285431	1.6035657	A	1.8540937	A	0.840588718853666	0	lncRNA	15825-1_{1..366}	lnc-FOXL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXL1-3:1	chr16	 86768432	 86768797	+	lnc-FOXL1-3	lnc-FOXL1-3:1	XLOC_011816	linc-MAP1LC3B-5	NA	NA	NA	inter
CUST_18656_PI429285431	3.71185	P	3.6345432	P	1.05504665685589	0	lncRNA	20359-1_{1..574}	lnc-GTF2F2-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2F2-2:6	chr13	 45952665	 45953238	+	lnc-GTF2F2-2	lnc-GTF2F2-2:6	ENSG00000170919	XXyac-R12DG2.2	NA	NA	NA	inter
CUST_29871_PI429285431	1.0009792	A	0.9294323	A	1.05084282431789	0	lncRNA	31634-1_{1..296}	n333869|L31942|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192849|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192849|-1.3545500|-0.3099920	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333869|L31942|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192849|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192849|-1.3545500|-0.3099920	chr5	 71735734	 71736029	+	NA	NA	NA	NA	ZNF366	NA	chr5:71739234-71746030	inter
CUST_25042_PI429285431	5.4622	P	5.972402	P	0.702124122564411	0	lncRNA	26581-1_{1..679}	lnc-ASH1L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASH1L-1:2	chr1	155293869	155294547	-	lnc-ASH1L-1	lnc-ASH1L-1:2	ENSG00000225855.2	RUSC1-AS1	FDPS	"hg19_refFlat_RUSC1:range=chr1:155291565-1553003625'pad=0,hg19_refFlat_RUSC1:range=chr1:155291565-1553003625'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.90;hg19_refFlat_FDPS:range=chr1:155279856-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155279856-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_FDPS:range=chr1:155279581-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155279581-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_FDPS:range=chr1:155287765-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155287765-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10chr1:155283869-155290457"	NA	inner
LNCA_21_P0001034	0.9910606	A	0.92831004	A	1.04445516238238	0	lncRNA	ENST00000449525	NA	NA	NA	NA	XLOC_000491	NA	ENST00000449525	NA	NA	"BROAD Institute lincRNA (XLOC_000491), lincRNA [TCONS_00000348]"	chr1:184301901-184301960	hs|1q25.3	Agilent_HUMAN_G3V2	ENST00000449525	ENST00000449525	chr1	184301901	184301960	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31466_PI429285431	2.1527689	A	3.8429725	P	0.309883189706131	0	lncRNA	33233-1_{1..1666}	n337946|AK130925|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|331|NULL|-1.0746800|-0.2588048	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337946|AK130925|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|331|NULL|-1.0746800|-0.2588048	chr15	 71798701	 71800366	+	NA	NA	NA	NA	THSD4	NA	chr15:71788701-71810353	inner
CUST_37971_PI429285431	3.304272	A	4.1498227	P	0.556498344159557	0	lncRNA	39059-1_{1..299}	n346522|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2072|NULL|-1.6020300|-0.3618573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346522|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2072|NULL|-1.6020300|-0.3618573	chr16	 21919876	 21920174	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006253	9.290836	P	9.389498	P	0.933898716577656	0	lncRNA	TCONS_00016269	NA	NA	NA	NA	XLOC_007645	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007645), lincRNA [TCONS_00016269]"	chr9:11143939-11143880	hs|9p23	Agilent_HUMAN_G3V2	TCONS_00016269	TCONS_00016269	chr9	 11143880	 11143939	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16983_PI429285431	6.0969925	P	6.6720133	P	0.671276573216311	0	lncRNA	18692-1_{1..291}	lnc-IRX1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRX1-1:2	chr5	  3461431	  3461721	+	lnc-IRX1-1	lnc-IRX1-1:2	XLOC_004263	linc-IRX1-1	NA	NA	NA	inter
CUST_40639_PI429285431	2.744669	A	1.1782386	A	2.96171003278815	0	lncRNA	41378-2_{3001..3600}	n410149|NR_036610|lncRNA|Homosapiens||RefGeneNoncode|NR_036610||1.5076500|-0.3328069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410149|NR_036610|lncRNA|Homosapiens||RefGeneNoncode|NR_036610||1.5076500|-0.3328069	chr6	 36565089	 36565688	+	NA	NA	NA	NA	SRSF3	NA	chr6:36562090-36572244	inner
CUST_28117_PI429285431	1.7761898	A	1.949683	A	0.886693128252236	0	lncRNA	29740-1_{1..2995}	n325390|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323862|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323862|-0.6218230|-0.1915666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325390|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323862|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323862|-0.6218230|-0.1915666	chr2	 19932115	 19935109	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11436_PI429285431	1.936121	A	2.429765	A	0.710228914018599	0	lncRNA	13004-1_{1..439}	lnc-MKI67IP-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MKI67IP-2:3	chr2	123565895	123566333	-	lnc-MKI67IP-2	lnc-MKI67IP-2:3	XLOC_002302	linc-MKI67IP-2	NA	NA	NA	inter
LNCA_21_P0001733	0.99203223	A	0.9255649	A	1.04714942855623	0	lncRNA	TCONS_00002412	NA	NA	NA	NA	XLOC_000933	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000933), lincRNA [TCONS_00002412]"	chr1:98399617-98399558	hs|1p21.3	Agilent_HUMAN_G3V2	TCONS_00002412	TCONS_00002412	chr1	 98399558	 98399617	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37592_PI429285431	4.96179	P	4.950131	P	1.00811414565803	0	lncRNA	38693-1_{1..684}	n346070|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1620|NULL|-1.5948000|-0.1649394	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346070|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1620|NULL|-1.5948000|-0.1649394	chr1	   664668	   665351	-	NA	NA	NA	NA	LOC100287654	NA	chr1:654668-659924	inter
CUST_32183_PI429285431	3.8323483	P	4.4061837	P	0.671828358746743	0	lncRNA	33881-2_{3001..3476}	n338754|BC041832|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1175|NULL|-0.9954020|-0.3513717	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338754|BC041832|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1175|NULL|-0.9954020|-0.3513717	chr13	 61307309	 61307784	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6707_PI429285431	2.18913	A	2.3906417	A	0.869638851526437	0	lncRNA	6656-1_{1..3000}	"transcript_id ""ENST00000562732.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562732.2"" | genecode_v17"	chr20	 47980414	 47983413	-	ENSG00000260124.2	ENST00000562732.2	RP4-791K14.2	RP4-791K14.2-001	KCNB1	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr20:47988505-47994296"	NA	inter
CUST_24265_PI429285431	0.95778483	A	0.92317283	A	1.02428131463702	0	lncRNA	25816-1_{1..2203}	lnc-KCTD6-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KCTD6-4:4	chr3	 59002933	 59005135	+	lnc-KCTD6-4	lnc-KCTD6-4:4	ENSG00000242428.1	RP11-147N17.1	C3orf67	NA	chr3:58992933-59014819	inner
CUST_5527_PI429285431	6.520071	P	6.45715	P	1.04457856161001	0	lncRNA	5458-1_{1..539}	"transcript_id ""ENST00000561876.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561876.1"" | genecode_v17"	chr16	 48671054	 48671592	+	ENSG00000260052.1	ENST00000561876.1	CTC-527H23.3	CTC-527H23.3-001	NA	NA	NA	inter
CUST_2279_PI429285431	0.9324217	A	1.0745939	A	0.906153773348095	0	lncRNA	2271-1_{1..391}	"transcript_id ""ENST00000501405.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000501405.2"" | genecode_v17"	chr5	101941339	101941729	+	ENSG00000247402.2	ENST00000501405.2	CTD-2340E1.2	CTD-2340E1.2-001	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-26.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40"	NA	inter
CUST_51184_PI429285431	15.068344	P	14.926425	P	1.10337178958022	0	lncRNA	54804-1_{1..595}	hg19_lincRNAsTranscripts_TCONS_l2_00007922 range=chr14:102144092-102144767 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007922 range=chr14:102144092-102144767 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	102144092	102144686	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44463_PI429285431	2.0059679	A	2.5622516	A	0.680051683708583	0	lncRNA	49067-1_{1..794}	"gi|392871549|ref|NR_033995.2| Homo sapiens uncharacterized LOC389247 (LOC389247), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|392871549|ref|NR_033995.2| Homo sapiens uncharacterized LOC389247 (LOC389247), non-coding RNA"	Chr4	184415890	184416683	-	389247	NR_033995.2	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-58.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70"	NA	inter
CUST_43625_PI429285431	10.880483	P	10.352953	P	1.44145919757141	0	lncRNA	48384-2_{3001..3235}	"gi|357933607|ref|NR_045553.1| Homo sapiens thrombospondin 3 (THBS3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|357933607|ref|NR_045553.1| Homo sapiens thrombospondin 3 (THBS3), transcript variant 4, non-coding RNA"	Chr1	155168379	155168613	-	7059	NR_045553.1	NA	NA	NA	NA	NA	inter
CUST_41364_PI429285431	1.0415766	A	0.911765	A	1.09415080794883	0	lncRNA	42441-1_{1..85}	ENST00000388402 ncrna:miRNA chromosome:GRCh37:15:63116156:63116240:1 gene:ENSG00000211137 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000388402 ncrna:miRNA chromosome:GRCh37:15:63116156:63116240:1 gene:ENSG00000211137 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 63116156	 63116240	+	ENSG00000211137	ENST00000388402	NA	NA	TLN2	NA	chr15:63106156-63126240	inner
CUST_51408_PI429285431	4.2292767	P	4.835797	P	0.656778907171592	0	lncRNA	54988-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00009916 range=chr16:75602-87928 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009916 range=chr16:75602-87928 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	    78602	    81601	-	NA	NA	NA	NA	POLR3K	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-62.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90chr16:96979-97928"	NA	inter
CUST_30989_PI429285431	1.1385931	A	0.9193749	A	1.16410258545194	0	lncRNA	32777-1_{1..649}	n337152|AF399544|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383961|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383961|5.0425000|-0.1023665	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337152|AF399544|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383961|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383961|5.0425000|-0.1023665	chr19	 14974677	 14975325	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16754_PI429285431	3.1568592	P	3.1269097	P	1.02097638689305	0	lncRNA	18462-1_{1..419}	lnc-CTD-2210P24.4.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2210P24.4.1-3:1	chr11	 45604666	 45605084	+	lnc-CTD-2210P24.4.1-3	lnc-CTD-2210P24.4.1-3:1	XLOC_009122	linc-SLC35C1-3	NA	NA	NA	inter
CUST_3203_PI429285431	1.0127585	A	0.97881705	A	1.02380534970711	0	lncRNA	3181-1_{1..1805}	"transcript_id ""ENST00000569134.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569134.1"" | genecode_v17"	chr8	 81453535	 81455339	+	ENSG00000260317.1	ENST00000569134.1	RP11-48B3.4	RP11-48B3.4-001	NA	NA	NA	inter
CUST_23315_PI429285431	0.94415164	A	0.92527837	A	1.01316789700627	0	lncRNA	24886-1_{1..543}	lnc-TAS2R1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TAS2R1-3:1	chr5	  9522864	  9523406	-	lnc-TAS2R1-3	lnc-TAS2R1-3:1	ENSG00000250001.1	CTD-2201E9.2	SEMA5A	NA	chr5:9512864-9533290	inner
CUST_33617_PI429285431	2.069063	A	2.4859118	A	0.749058967364889	0	lncRNA	35182-1_{1..224}	n340376|AF056442|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2837|NULL|-1.0042900|-0.1262366	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340376|AF056442|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2837|NULL|-1.0042900|-0.1262366	chr5	 10373405	 10373628	+	NA	NA	NA	NA	6-Mar	NA	chr5:10363405-10383614	inner
CUST_48784_PI429285431	1.8644271	A	1.459161	A	1.3243331564384	0	lncRNA	52622-1_{1..412}	hg19_lincRNAsTranscripts_TCONS_l2_00014214 range=chr2:210045261-210045746 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014214 range=chr2:210045261-210045746 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	210045261	210045672	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19439_PI429285431	1.3416964	A	1.5207787	A	0.883264663316826	0	lncRNA	21099-1_{1..562}	lnc-TIGIT-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TIGIT-6:1	chr3	115380001	115380562	+	lnc-TIGIT-6	lnc-TIGIT-6:1	ENSG00000241596.1	RP11-326J18.1	GAP43	NA	chr3:115370001-115390126	inner
CUST_21609_PI429285431	0.90291184	A	0.92844045	A	0.982460554589567	0	lncRNA	23222-1_{1..288}	lnc-MYB-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYB-4:1	chr6	135263348	135263635	+	lnc-MYB-4	lnc-MYB-4:1	ENSG00000240056.2	RP11-349J5.2	ALDH8A1	"hg19_refFlat_ALDH8A1:range=chr6:135239553-1352711915'pad=0,hg19_refFlat_ALDH8A1:range=chr6:135239553-1352711915'pad=0 3'pad=0 strand=- repeatMasking=none,-99.50chr6:135253348-135271260"	NA	inner
CUST_28326_PI429285431	0.92543757	A	1.0019134	A	0.94837147146207	0	lncRNA	29971-1_{1..437}	n325631|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045758|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045758|-1.1590100|-0.2895201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325631|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045758|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045758|-1.1590100|-0.2895201	chr13	109503632	109504068	+	NA	NA	NA	NA	MYO16	NA	chr13:109493632-109515300	inner
CUST_27549_PI429285431	1.700287	A	0.9041929	A	1.73639370804811	0	lncRNA	29124-1_{1..3000}	n324735|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319013|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319013|-1.0380500|-0.3331922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324735|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319013|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319013|-1.0380500|-0.3331922	chr22	 18721495	 18724494	+	NA	NA	NA	NA	LOC642643	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20chr22:18711495-18737841"	NA	inter
CUST_42104_PI429285431	0.9201953	A	0.9059274	A	1.00993881989543	0	lncRNA	44061-1_{1..93}	ENST00000580651 ncrna:miRNA chromosome:GRCh37:8:10524488:10524580:1 gene:ENSG00000263762 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580651 ncrna:miRNA chromosome:GRCh37:8:10524488:10524580:1 gene:ENSG00000263762 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 10524488	 10524580	+	ENSG00000263762	ENST00000580651	NA	NA	C8orf74	NA	chr8:10530147-10534580	inter
CUST_34910_PI429285431	8.173735	P	7.920533	P	1.19184944056188	0	lncRNA	36333-2_{3001..3845}	n341827|AK124760|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4306|NULL|-1.2276700|-0.4367900	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341827|AK124760|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4306|NULL|-1.2276700|-0.4367900	chr12	 12271962	 12272806	-	NA	NA	NA	NA	LRP6	NA	chr12:12268959-12282807	inner
CUST_18626_PI429285431	3.1215565	P	2.8814101	A	1.18111251080418	0	lncRNA	20331-1_{1..1283}	lnc-DLK1-9:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DLK1-9:4	chr14	101452956	101454238	+	lnc-DLK1-9	lnc-DLK1-9:4	ENSG00000232018	AL132709.8	NA	NA	NA	inter
CUST_13865_PI429285431	2.1919317	A	2.5967395	A	0.75533691424393	0	lncRNA	15509-1_{1..453}	lnc-C9orf50-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf50-1:1	chr9	132326617	132327069	-	lnc-C9orf50-1	lnc-C9orf50-1:1	XLOC_007869	linc-IER5L-1	NA	NA	NA	inter
CUST_21037_PI429285431	11.069612	P	11.257928	P	0.877629545398743	0	lncRNA	22664-1_{1..2332}	lnc-LY6G6E.7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-LY6G6E.7-1:1	chr6	 31681538	 31683869	-	lnc-LY6G6E.7-1	lnc-LY6G6E.7-1:1	ENSG00000204422.7	LY6G6E	LY6G6C	NA	chr6:31686425-31689510	inter
CUST_36755_PI429285431	0.9143375	A	0.90350604	A	1.00753605012501	0	lncRNA	37928-1_{1..398}	n345235|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_784|NULL|-1.3089900|-0.2154022	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345235|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_784|NULL|-1.3089900|-0.2154022	chr13	103555688	103556085	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50337_PI429285431	6.0549474	P	6.1013026	P	0.968379739089501	0	lncRNA	54053-1_{1..1456}	hg19_lincRNAsTranscripts_TCONS_l2_00029086 range=chr9:133223564-133231246 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029086 range=chr9:133223564-133231246 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	133223564	133225019	+	NA	NA	NA	NA	HMCN2	NA	chr9:133223389-133241246	inter
CUST_26335_PI429285431	1.4466304	A	0.9128852	A	1.4476824689507	0	lncRNA	27842-1_{1..2077}	lnc-ZG16-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZG16-3:1	chr16	 29679763	 29681839	+	lnc-ZG16-3	lnc-ZG16-3:1	ENSG00000260043.1	RP11-368N21.4	SPN	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.90;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.42;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-23.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50chr16:29669763-29681828"	NA	inner
CUST_39926_PI429285431	1.484963	A	2.3217585	A	0.55988580173026	0	lncRNA	40804-1_{1..1553}	n406790|NR_024240_3|lncRNA|Homosapiens||RefGeneNoncode|NR_024240_3||-1.0461200|-0.3054209	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406790|NR_024240_3|lncRNA|Homosapiens||RefGeneNoncode|NR_024240_3||-1.0461200|-0.3054209	chr6	  1267090	  1268642	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13128_PI429285431	1.2637122	A	2.5465298	A	0.410992052106745	0	lncRNA	14756-1_{1..385}	lnc-CST8-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CST8-1:2	chr20	 23487412	 23487796	+	lnc-CST8-1	lnc-CST8-1:2	XLOC_013490	linc-TMEM90B-6	NA	NA	NA	inter
CUST_35552_PI429285431	3.2670493	P	2.8876085	A	1.30083754279788	0	lncRNA	36965-1_{1..1553}	n342678|CR612552|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5180|NULL|-1.3852200|-0.4751752	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342678|CR612552|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5180|NULL|-1.3852200|-0.4751752	chr17	 22022436	 22023988	+	NA	NA	NA	NA	MTRNR2L1	NA	chr17:22022437-22023991	inner
CUST_39901_PI429285431	5.0098715	P	5.8763313	P	0.548491131829524	0	lncRNA	40785-1_{1..2493}	n406626|NR_024151|lncRNA|Homosapiens||RefGeneNoncode|NR_024151||19.7865000|-0.1773816	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406626|NR_024151|lncRNA|Homosapiens||RefGeneNoncode|NR_024151||19.7865000|-0.1773816	chr1	161575848	161578340	+	NA	NA	NA	NA	FCGR2C	NA	chr1:161565848-161570032	inter
CUST_41446_PI429285431	9.9185095	P	9.946983	P	0.98045716004752	0	lncRNA	42624-1_{1..77}	ENST00000385091 ncrna:miRNA chromosome:GRCh37:8:1765397:1765473:1 gene:ENSG00000207826 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385091 ncrna:miRNA chromosome:GRCh37:8:1765397:1765473:1 gene:ENSG00000207826 gene_biotype:miRNA transcript_biotype:miRNA	chr8	  1765397	  1765473	+	ENSG00000207826	ENST00000385091	NA	NA	ARHGEF10	NA	chr8:1772149-1775473	inter
LNCA_21_P0014732	1.8412118	A	0.91164863	A	1.90469918969411	0	lncRNA	ENST00000422968	XR_113072	XR_113072	NA	NA	LOC100508939	NA	ENST00000422968	THC2502157	NA	"PREDICTED: Homo sapiens hypothetical LOC100508939 (LOC100508939), miscRNA [XR_113072]"	chr7:135378093-135378152	hs|7q33	Agilent_HUMAN_G3V2	ENST00000422968	ENST00000422968	chr7	135378093	135378152	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33456_PI429285431	1.0878731	A	0.8996514	A	1.13935844981464	0	lncRNA	35031-1_{1..995}	n340190|AL358312|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2651|NULL|-1.2502800|-0.3416345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340190|AL358312|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2651|NULL|-1.2502800|-0.3416345	chr4	102218140	102219134	-	NA	NA	NA	NA	PPP3CA	NA	chr4:102208140-102229108	inner
CUST_28993_PI429285431	0.89267284	A	0.91254884	A	0.986317475084227	0	lncRNA	30717-1_{1..490}	n326477|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033260|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033260|-0.5959490|-0.3628253	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326477|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033260|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033260|-0.5959490|-0.3628253	chr1	113194220	113194709	+	NA	NA	NA	NA	CAPZA1	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-15.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90chr1:113184220-113214241"	NA	inner
CUST_35267_PI429285431	0.90998936	A	0.919098	A	0.993706260935964	0	lncRNA	36668-1_{1..1920}	n342276|AK131352|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4767|NULL|-0.8563760|-0.2284554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342276|AK131352|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4767|NULL|-0.8563760|-0.2284554	chr22	 36533477	 36535396	-	NA	NA	NA	NA	APOL3	NA	chr22:36536371-36545398	inter
CUST_4614_PI429285431	8.126894	P	8.685412	P	0.67899930363932	0	lncRNA	4560-1_{1..295}	"transcript_id ""ENST00000426509.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426509.1"" | genecode_v17"	chr13	 45225948	 45226242	+	ENSG00000237585.1	ENST00000426509.1	RP11-442J21.1	RP11-442J21.1-001	NA	NA	NA	inter
CUST_44583_PI429285431	8.367134	P	7.707221	P	1.57998734160576	0	lncRNA	49164-1_{1..3000}	"gi|293336341|ref|NR_033440.1| Homo sapiens peptidylglycine alpha-amidating monooxygenase (PAM), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|293336341|ref|NR_033440.1| Homo sapiens peptidylglycine alpha-amidating monooxygenase (PAM), transcript variant 6, non-coding RNA"	Chr5	102201527	102204526	+	5066	NR_033440.1	NA	NA	NA	NA	NA	inter
CUST_11089_PI429285431	0.92673534	A	0.9397057	A	0.991049924059097	0	lncRNA	12643-1_{1..914}	lnc-TTC23-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TTC23-2:2	chr15	 99936691	 99937604	-	lnc-TTC23-2	lnc-TTC23-2:2	XLOC_011608	linc-TTC23	NA	NA	NA	inter
CUST_43403_PI429285431	4.387065	P	4.2768497	P	1.07938930670396	0	lncRNA	48216-1_{1..3000}	"gi|381214344|ref|NR_046474.1| Homo sapiens solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 (SLC9A1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|381214344|ref|NR_046474.1| Homo sapiens solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 (SLC9A1), transcript variant 2, non-coding RNA"	Chr1	 27425300	 27428299	-	6548	NR_046474.1	NA	NA	NA	NA	NA	inter
CUST_48647_PI429285431	1.7387419	A	2.2500725	A	0.701575075541551	0	lncRNA	52494-1_{1..1364}	hg19_lincRNAsTranscripts_TCONS_l2_00013786 range=chr2:91933014-91941270 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013786 range=chr2:91933014-91941270 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 91933014	 91934377	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45814_PI429285431	0.900923	A	0.9030911	A	0.998498316254929	0	lncRNA	50149-2_{3001..3423}	"gi|387849361|ref|NR_049733.1| Homo sapiens membrane-spanning 4-domains, subfamily A, member 14 (MS4A14), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387849361|ref|NR_049733.1| Homo sapiens membrane-spanning 4-domains, subfamily A, member 14 (MS4A14), transcript variant 7, non-coding RNA"	Chr11	 60166487	 60166909	+	84689	NR_049733.1	NA	NA	NA	NA	NA	inter
CUST_33208_PI429285431	6.0430255	P	4.463799	P	2.9880960020081	0	lncRNA	34799-1_{1..591}	n339905|AF086045|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2354|NULL|-1.2201600|-0.3934600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339905|AF086045|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2354|NULL|-1.2201600|-0.3934600	chr18	 60994970	 60995560	-	NA	NA	NA	NA	BCL2	NA	chr18:60984970-60986613	inner
CUST_27269_PI429285431	5.9087625	P	6.1829863	P	0.82689508528615	0	lncRNA	28824-1_{1..524}	n324417|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041895|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041895|-1.1287800|-0.4680864	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324417|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041895|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041895|-1.1287800|-0.4680864	chr6	113856434	113856957	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16600_PI429285431	1.1168814	A	1.2544802	A	0.909030874287742	0	lncRNA	18301-1_{1..437}	lnc-CCDC90A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC90A-1:2	chr6	 14231399	 14231835	-	lnc-CCDC90A-1	lnc-CCDC90A-1:2	XLOC_005613	linc-CCDC90A-5	NA	NA	NA	inter
CUST_20114_PI429285431	2.0111654	A	1.3467941	A	1.58487746222246	0	lncRNA	21762-1_{1..691}	lnc-FAM120AOS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM120AOS-1:1	chr9	 96199304	 96199994	-	lnc-FAM120AOS-1	lnc-FAM120AOS-1:1	ENSG00000227603.1	RP11-165J3.6	FAM120AOS	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-24.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80chr9:96208782-96209403"	NA	inter
CUST_3383_PI429285431	6.85982	P	6.655088	P	1.15247223970003	0	lncRNA	3357-1_{1..564}	"transcript_id ""ENST00000522960.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522960.1"" | genecode_v17"	chr9	 27102628	 27103191	+	ENSG00000254396.1	ENST00000522960.1	RP11-56F10.3	RP11-56F10.3-001	TEK	NA	chr9:27109147-27114726	inter
CUST_6183_PI429285431	1.4609185	A	1.0380703	A	1.34057152956873	0	lncRNA	6107-1_{1..571}	"transcript_id ""ENST00000583609.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583609.1"" | genecode_v17"	chr18	 48918412	 48918982	+	ENSG00000227115.2	ENST00000583609.1	RP11-267C16.1	RP11-267C16.1-003	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50"	NA	inter
CUST_16678_PI429285431	0.9258666	A	0.9297263	A	0.997328235360413	0	lncRNA	18383-1_{1..883}	lnc-LGALS9B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LGALS9B-2:2	chr17	 20481940	 20482822	-	lnc-LGALS9B-2	lnc-LGALS9B-2:2	XLOC_012419	linc-LGALS9B-2	CDRT15L2	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr17:20471940-20484224"	NA	inter
CUST_19355_PI429285431	0.915624	A	0.921937	A	0.995633721879421	0	lncRNA	21019-3_{6001..9000}	lnc-AC142381.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AC142381.1-1:1	chr16	 32147463	 32150462	+	lnc-AC142381.1-1	lnc-AC142381.1-1:1	ENSG00000260544.1	RP11-1166P10.9	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_39778_PI429285431	3.8242793	P	2.850851	A	1.9635009554125	0	lncRNA	40693-1_{1..2923}	n405990|NR_003281|lncRNA|Homosapiens||RefGeneNoncode|NR_003281||8.5060700|-0.3352778	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405990|NR_003281|lncRNA|Homosapiens||RefGeneNoncode|NR_003281||8.5060700|-0.3352778	chr5	177611510	177614432	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17528_PI429285431	5.047175	P	5.165956	P	0.920965488449014	0	lncRNA	19253-1_{1..1094}	lnc-ZNF572-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF572-1:9	chr8	125963058	125964151	+	lnc-ZNF572-1	lnc-ZNF572-1:9	XLOC_006916	linc-ZNF572	NA	NA	NA	inter
CUST_18051_PI429285431	1.0240767	A	1.0383673	A	0.990143408673331	0	lncRNA	19786-1_{1..228}	lnc-CDH6-2:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH6-2:14	chr5	 29176999	 29177226	+	lnc-CDH6-2	lnc-CDH6-2:14	XLOC_004325	linc-CDH6-3	NA	NA	NA	inter
CUST_27429_PI429285431	9.481041	P	9.347562	P	1.09693572999206	0	lncRNA	28994-1_{1..527}	n324599|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039800|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039800|-1.3667000|-0.3239837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324599|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039800|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039800|-1.3667000|-0.3239837	chr6	  8273382	  8273908	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40544_PI429285431	5.1540065	P	3.8813343	P	2.41608665655089	0	lncRNA	41302-1_{1..708}	n409668|NR_034068|lncRNA|Homosapiens||RefGeneNoncode|NR_034068||1.8584500|-0.1727814	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409668|NR_034068|lncRNA|Homosapiens||RefGeneNoncode|NR_034068||1.8584500|-0.1727814	chr11	104757417	104758124	-	NA	NA	NA	NA	CASP12	NA	chr11:104756445-104769397	inter
CUST_2614_PI429285431	3.4620373	P	3.8502798	P	0.764059820155039	0	lncRNA	2601-1_{1..251}	"transcript_id ""ENST00000438522.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438522.1"" | genecode_v17"	chr6	114798514	114798764	-	ENSG00000232395.1	ENST00000438522.1	RP3-399L15.1	RP3-399L15.1-001	NA	NA	NA	inter
CUST_22702_PI429285431	0.9086722	A	1.1208667	A	0.863223173461358	0	lncRNA	24285-1_{1..510}	lnc-PKP4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PKP4-1:1	chr2	159610147	159610656	+	lnc-PKP4-1	lnc-PKP4-1:1	ENSG00000228586.1	AC005042.5	NA	NA	NA	inter
CUST_48543_PI429285431	1.3677242	A	1.2787704	A	1.06359861230429	0	lncRNA	52392-1_{1..1263}	hg19_lincRNAsTranscripts_TCONS_l2_00014784 range=chr2:111953779-112125156 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014784 range=chr2:111953779-112125156 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	111953779	111955041	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23561_PI429285431	0.9114697	A	0.90510666	A	1.00442026390862	0	lncRNA	25128-1_{1..694}	lnc-MTA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTA2-1:1	chr11	 62357864	 62358557	-	lnc-MTA2-1	lnc-MTA2-1:1	ENSG00000254742.1	RP11-838H22.2	TUT1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90chr11:62347864-62359109"	NA	inner
CUST_36763_PI429285431	0.90923864	A	0.9555727	A	0.968393928989024	0	lncRNA	37936-1_{1..2146}	n345243|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_792|NULL|-1.4140800|-0.3583028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345243|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_792|NULL|-1.4140800|-0.3583028	chr14	 42881775	 42883920	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18792_PI429285431	2.338453	A	3.1348126	P	0.575800281769075	0	lncRNA	20488-1_{1..248}	lnc-C9orf116-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf116-2:1	chr9	138356596	138356843	-	lnc-C9orf116-2	lnc-C9orf116-2:1	ENSG00000230200	RP11-426A6.8	NA	NA	NA	inter
CUST_40407_PI429285431	3.2031314	P	3.2781823	P	0.949308627620206	0	lncRNA	41192-3_{6001..6684}	n409269|NR_033441|lncRNA|Homosapiens||RefGeneNoncode|NR_033441||6.6855000|-0.2982223	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409269|NR_033441|lncRNA|Homosapiens||RefGeneNoncode|NR_033441||6.6855000|-0.2982223	chr6	114263319	114264002	-	NA	NA	NA	NA	HDAC2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10chr6:114257320-114292359"	NA	inter
CUST_34879_PI429285431	1.2804551	A	1.8486156	A	0.674476227432925	0	lncRNA	36304-1_{1..2470}	n341792|BC037833|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4269|NULL|1.0762200|-0.2276569	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341792|BC037833|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4269|NULL|1.0762200|-0.2276569	chr9	132337687	132340156	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90"	NA	inter
CUST_24812_PI429285431	2.1908057	A	2.7159173	A	0.694905353281816	0	lncRNA	26353-1_{1..3000}	lnc-KRTAP9-7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KRTAP9-7-1:2	chr17	 39579606	 39582605	+	lnc-KRTAP9-7-1	lnc-KRTAP9-7-1:2	ENSG00000234859.1	AC003958.2	KRT37	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_KRT38:range=chr17:39593664-395971735'pad=0,hg19_refFlat_KRT38:range=chr17:39593664-395971735'pad=0 3'pad=0 strand=- repeatMasking=none,-95.90;hg19_refFlat_KRT37:range=chr17:39577130-395807755'pad=0,hg19_refFlat_KRT37:range=chr17:39577130-395807755'pad=0 3'pad=0 strand=- repeatMasking=none,-103.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_KRT33B:range=chr17:39520088-395260025'pad=0,hg19_refFlat_KRT33B:range=chr17:39520088-395260025'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20chr17:39576809-39580822"	NA	inner
CUST_42984_PI429285431	5.2814503	P	6.28098	P	0.500163020129296	0	lncRNA	46139-1_{1..137}	ENST00000365564 ncrna:snoRNA chromosome:GRCh37:2:198269442:198269578:1 gene:ENSG00000202434 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365564 ncrna:snoRNA chromosome:GRCh37:2:198269442:198269578:1 gene:ENSG00000202434 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	198269442	198269578	+	ENSG00000202434	ENST00000365564	NA	NA	SF3B1	NA	chr2:198259442-198279578	inner
CUST_10898_PI429285431	0.9217125	A	1.1980507	A	0.825684083421642	0	lncRNA	12440-1_{1..206}	lnc-FGF9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGF9-2:1	chr13	 22183759	 22183964	+	lnc-FGF9-2	lnc-FGF9-2:1	XLOC_010300	linc-FGF9-1	EFHA1	NA	chr13:22173759-22178355	inter
CUST_32733_PI429285431	3.9308627	P	4.052435	P	0.919185343903399	0	lncRNA	34373-1_{1..1790}	n339361|AK093691|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1793|NULL|-1.0719300|-0.3317664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339361|AK093691|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1793|NULL|-1.0719300|-0.3317664	chr3	 50707419	 50709208	+	NA	NA	NA	NA	DOCK3	NA	chr3:50712672-50719479	inter
CUST_48501_PI429285431	2.985946	A	1.3473079	A	3.11371759032457	0	lncRNA	52353-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00001907 range=chr1:247348512-247374139 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001907 range=chr1:247348512-247374139 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	247351512	247354511	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10"	NA	inter
CUST_19836_PI429285431	8.218373	P	8.176048	P	1.02977203697142	0	lncRNA	21493-1_{1..320}	lnc-EPB41-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EPB41-2:1	chr1	 29479383	 29479702	+	lnc-EPB41-2	lnc-EPB41-2:1	ENSG00000227637.1	RP11-242O24.5	SRSF4	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80chr1:29474250-29489503"	NA	inner
CUST_50511_PI429285431	1.162492	A	1.4574804	A	0.815078886024007	0	lncRNA	54207-1_{1..2982}	hg19_lincRNAsTranscripts_TCONS_l2_00030587 range=chrX:118947684-118966262 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030587 range=chrX:118947684-118966262 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	118947684	118950665	-	NA	NA	NA	NA	UPF3B	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60chrX:118937684-118976262"	NA	inter
CUST_25464_PI429285431	0.9147971	A	0.9119476	A	1.00197707473105	0	lncRNA	26994-1_{1..800}	lnc-TMEM178-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM178-2:6	chr2	 40481560	 40482359	+	lnc-TMEM178-2	lnc-TMEM178-2:6	ENSG00000227028.1	AC007254.3	SLC8A1	NA	chr2:40471560-40491903	inner
CUST_45958_PI429285431	2.6482542	A	2.1027143	A	1.45956645584045	0	lncRNA	50251-1_{1..2230}	"gi|365906281|ref|NR_045725.1| Homo sapiens CACNA1C antisense RNA 1 (CACNA1C-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|365906281|ref|NR_045725.1| Homo sapiens CACNA1C antisense RNA 1 (CACNA1C-AS1), non-coding RNA"	Chr12	  2785167	  2787396	-	100652846	NR_045725.1	NA	NA	NA	"hg19_refFlat_CACNA1C:range=chr12:2162729-28003655'pad=0,hg19_refFlat_CACNA1C:range=chr12:2162729-28003655'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.00;hg19_refFlat_CACNA1S:range=chr1:201008959-2010814675'pad=0,hg19_refFlat_CACNA1S:range=chr1:201008959-2010814675'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90"	NA	inter
CUST_49699_PI429285431	0.9134929	A	0.91919875	A	0.996052816847473	0	lncRNA	53476-1_{1..866}	hg19_lincRNAsTranscripts_TCONS_l2_00025686 range=chr7:16596985-16621350 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025686 range=chr7:16596985-16621350 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 16596985	 16597850	+	NA	NA	NA	NA	LOC100506049	NA	chr7:16586985-16621114	inner
CUST_20786_PI429285431	0.91428673	A	1.6334751	A	0.607439078587206	0	lncRNA	22419-1_{1..504}	lnc-CALM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALM2-1:1	chr2	 47267507	 47268010	-	lnc-CALM2-1	lnc-CALM2-1:1	ENSG00000233845.1	AC093732.1	TTC7A	NA	chr2:47257507-47277663	inner
CUST_30831_PI429285431	3.0879192	P	3.4665718	A	0.769155605492316	0	lncRNA	32619-1_{1..411}	n336782|Z92890|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328238|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328238|2.6838900|-0.0920248	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336782|Z92890|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328238|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328238|2.6838900|-0.0920248	chr14	106068002	106068412	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001623	5.4649363	P	5.115919	P	1.27369274865303	0	lncRNA	TCONS_00001815	NA	NA	NA	NA	XLOC_001199	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001199), lincRNA [TCONS_00001815]"	chr1:213990733-213990674	hs|1q32.3	Agilent_HUMAN_G3V2	TCONS_00001815	TCONS_00001815	chr1	213990674	213990733	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4387_PI429285431	1.7168063	A	1.3798016	A	1.26313137685807	0	lncRNA	4338-1_{1..340}	"transcript_id ""ENST00000548194.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548194.1"" | genecode_v17"	chr12	 95782375	 95782714	-	ENSG00000257583.1	ENST00000548194.1	RP11-167N24.4	RP11-167N24.4-001	NA	NA	NA	inter
CUST_18268_PI429285431	6.4264517	P	6.5004663	P	0.949990768968263	0	lncRNA	20002-1_{1..531}	lnc-ARHGEF35-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARHGEF35-1:8	chr7	144052431	144052961	-	lnc-ARHGEF35-1	lnc-ARHGEF35-1:8	ENSG00000244479	RP4-798C17.6	ARHGEF5	NA	chr7:144052489-144062613	inner
CUST_7080_PI429285431	0.9182684	A	0.9163116	A	1.00135727066214	0	lncRNA	7017-11_{30001..33000}	"transcript_id ""ENST00000604411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000604411.1"" | genecode_v17"	chrX	 73042040	 73045039	+	ENSG00000270641.1	ENST00000604411.1	TSIX	TSIX-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_42584_PI429285431	7.8570414	P	8.096328	P	0.847164124007758	0	lncRNA	45428-1_{1..134}	ENST00000364937 ncrna:snoRNA chromosome:GRCh37:6:137176836:137176969:-1 gene:ENSG00000201807 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364937 ncrna:snoRNA chromosome:GRCh37:6:137176836:137176969:-1 gene:ENSG00000201807 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	137176836	137176969	-	ENSG00000201807	ENST00000364937	NA	NA	PEX7	NA	chr6:137166836-137186969	inner
CUST_31974_PI429285431	2.561696	A	2.828448	A	0.831188731072742	0	lncRNA	33697-1_{1..2922}	n338533|BC040600|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|933|NULL|-1.0815000|-0.3313638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338533|BC040600|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|933|NULL|-1.0815000|-0.3313638	chr1	220574463	220577384	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4284_PI429285431	1.0068178	A	1.0094117	A	0.998203660880232	0	lncRNA	4240-1_{1..3000}	"transcript_id ""ENST00000535058.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000535058.1"" | genecode_v17"	chr12	 65277174	 65280173	+	ENSG00000255693.1	ENST00000535058.1	RP11-766N7.3	RP11-766N7.3-001	TBC1D30	NA	chr12:65267174-65274802	inter
CUST_8981_PI429285431	4.056161	P	4.337204	P	0.822995815252302	0	lncRNA	10512-1_{1..3000}	lnc-MRPL41-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-MRPL41-1:1	chr9	140454338	140457337	+	lnc-MRPL41-1	lnc-MRPL41-1:1	ENSG00000250226	ENST00000505429	PNPLA7	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-54.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_WDR85:range=chr9:140449691-1404732295'pad=0,hg19_refFlat_WDR85:range=chr9:140449691-1404732295'pad=0 3'pad=0 strand=- repeatMasking=none,-96.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60chr9:140444338-140444986"	NA	inner
CUST_50548_PI429285431	2.8138015	A	1.626049	A	2.27797592520503	0	lncRNA	54240-1_{1..1590}	hg19_lincRNAsTranscripts_TCONS_l2_00030932 range=chrY:13317320-13370650 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030932 range=chrY:13317320-13370650 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrY	 13317320	 13318909	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15143_PI429285431	0.9287281	A	0.9508149	A	0.984807190015891	0	lncRNA	16806-1_{1..578}	lnc-KLHL25-8:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL25-8:8	chr15	 86658807	 86659384	-	lnc-KLHL25-8	lnc-KLHL25-8:8	XLOC_011565	linc-KLHL25-3	NA	NA	NA	inter
CUST_18712_PI429285431	1.1857477	A	1.2020019	A	0.988796677021021	0	lncRNA	20410-1_{1..554}	lnc-PUS10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PUS10-1:1	chr2	 61108367	 61108920	-	lnc-PUS10-1	lnc-PUS10-1:1	ENSG00000228414	AC010733.4	REL	NA	chr2:61098367-61118449	inter
CUST_20662_PI429285431	1.6133566	A	1.4687672	A	1.10541600026328	0	lncRNA	22301-1_{1..401}	lnc-ETNK1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ETNK1-5:1	chr12	 23791070	 23791470	+	lnc-ETNK1-5	lnc-ETNK1-5:1	ENSG00000256473.1	RP11-437F6.1	SOX5	NA	chr12:23781070-23801421	inner
CUST_829_PI429285431	0.94437355	A	0.9244398	A	1.01391291882511	0	lncRNA	822-1_{1..171}	"transcript_id ""ENST00000458413.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458413.2"" | genecode_v17"	chr2	 34960042	 34960212	-	ENSG00000232153.2	ENST00000458413.2	AC073218.3	AC073218.3-001	NA	NA	NA	inter
CUST_20020_PI429285431	3.3221734	P	3.5991406	P	0.825324172232193	0	lncRNA	21673-1_{1..516}	lnc-TFEC-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TFEC-2:2	chr7	116139408	116139923	-	lnc-TFEC-2	lnc-TFEC-2:2	ENSG00000237813.2	AC002066.1	CAV2	NA	chr7:116139655-116148595	inter
CUST_45810_PI429285431	1.0772855	A	0.9047079	A	1.12707037411717	0	lncRNA	50147-2_{3001..3474}	"gi|387849357|ref|NR_049732.1| Homo sapiens membrane-spanning 4-domains, subfamily A, member 14 (MS4A14), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387849357|ref|NR_049732.1| Homo sapiens membrane-spanning 4-domains, subfamily A, member 14 (MS4A14), transcript variant 6, non-coding RNA"	Chr11	 60166487	 60166960	+	84689	NR_049732.1	NA	NA	NA	NA	NA	inter
CUST_863_PI429285431	3.3522036	P	1.8763124	A	2.78155416623461	0	lncRNA	857-1_{1..570}	"transcript_id ""ENST00000418415.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418415.1"" | genecode_v17"	chr2	 46619436	 46620005	-	ENSG00000228100.1	ENST00000418415.1	AC016912.3	AC016912.3-001	EPAS1	NA	chr2:46609436-46613842	inter
CUST_39075_PI429285431	1.2267084	A	1.5689474	A	0.788816153027254	0	lncRNA	40050-1_{1..1438}	n385560|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aep.1||1.5442800|-0.1464512	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385560|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aep.1||1.5442800|-0.1464512	chr9	 67271409	 67272846	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24128_PI429285431	1.3780851	A	1.5719049	A	0.874287816616991	0	lncRNA	25679-1_{1..657}	lnc-COX7A2L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COX7A2L-1:2	chr2	 42397110	 42397766	-	lnc-COX7A2L-1	lnc-COX7A2L-1:2	ENSG00000224875.2	AC083949.1	EML4	NA	chr2:42396490-42407371	inner
CUST_11357_PI429285431	2.8073654	A	3.2894766	P	0.715929186108037	0	lncRNA	12922-1_{1..1653}	lnc-GAP43-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-GAP43-8:1	chr3	116649764	116651416	+	lnc-GAP43-8	lnc-GAP43-8:1	XLOC_002769	linc-C3orf30-7	NA	NA	NA	inter
CUST_13827_PI429285431	0.9100411	A	0.9039763	A	1.00421264737832	0	lncRNA	15470-1_{1..705}	lnc-CXorf30-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CXorf30-1:2	chrX	 36223074	 36223778	+	lnc-CXorf30-1	lnc-CXorf30-1:2	XLOC_007950	linc-CXorf30	CXorf30	NA	chrX:36229231-36233194	inter
CUST_3095_PI429285431	2.8982375	A	3.0880184	P	0.876738860263005	0	lncRNA	3074-1_{1..764}	"transcript_id ""ENST00000524011.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524011.1"" | genecode_v17"	chr8	 49464575	 49465338	-	ENSG00000253688.1	ENST00000524011.1	RP11-567J20.2	RP11-567J20.2-001	NA	NA	NA	inter
CUST_48991_PI429285431	0.9252058	A	0.9303142	A	0.996465388441261	0	lncRNA	52823-3_{6001..6555}	hg19_lincRNAsTranscripts_TCONS_l2_00019107 range=chr3:196181573-196192929 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019107 range=chr3:196181573-196192929 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	196187573	196188127	+	NA	NA	NA	NA	RNF168	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10chr3:196195654-196202929"	NA	inter
CUST_36756_PI429285431	4.881221	P	5.730111	P	0.555211747980854	0	lncRNA	37929-1_{1..239}	n345236|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_785|NULL|-1.3212500|-0.3916424	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345236|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_785|NULL|-1.3212500|-0.3916424	chr13	108899100	108899338	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11157_PI429285431	0.93989944	A	0.9061185	A	1.02369145047624	0	lncRNA	12715-1_{1..529}	lnc-TTC35-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC35-3:1	chr8	109271365	109271893	+	lnc-TTC35-3	lnc-TTC35-3:1	XLOC_006900	linc-TTC35-1	NA	NA	NA	inter
CUST_40883_PI429285431	4.5581636	P	4.910706	P	0.783202676338382	0	lncRNA	41575-1_{1..1986}	n410687|NR_037937|lncRNA|Homosapiens||RefGeneNoncode|NR_037937||1.1089500|-0.2150660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410687|NR_037937|lncRNA|Homosapiens||RefGeneNoncode|NR_037937||1.1089500|-0.2150660	chr1	151138497	151140482	+	NA	NA	NA	NA	TNFAIP8L2-SCNM1	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20chr1:151129105-151142773"	NA	inter
CUST_6330_PI429285431	7.6394787	P	7.78115	P	0.90646844222576	0	lncRNA	6254-1_{1..1760}	"transcript_id ""ENST00000317726.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000317726.4"" | genecode_v17"	chr19	 10332111	 10333870	-	ENSG00000175898.4	ENST00000317726.4	CTD-2369P2.2	CTD-2369P2.2-002	S1PR2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50chr19:10332109-10341948"	NA	inner
CUST_41293_PI429285431	1.2683557	A	1.3540297	A	0.942344187576935	0	lncRNA	42285-1_{1..73}	ENST00000362257 ncrna:miRNA chromosome:GRCh37:8:14710947:14711019:-1 gene:ENSG00000199127 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362257 ncrna:miRNA chromosome:GRCh37:8:14710947:14711019:-1 gene:ENSG00000199127 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 14710947	 14711019	-	ENSG00000199127	ENST00000362257	NA	NA	SGCZ	NA	chr8:14700947-14721019	inner
CUST_919_PI429285431	1.0987353	A	0.92007434	A	1.13183288489713	0	lncRNA	909-1_{1..397}	"transcript_id ""ENST00000444266.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444266.1"" | genecode_v17"	chr2	 67148642	 67149038	-	ENSG00000232688.1	ENST00000444266.1	AC007403.1	AC007403.1-001	NA	NA	NA	inter
LNCA_21_P0004387	1.6137204	A	2.1741157	A	0.678116333658069	0	lncRNA	TCONS_00010334	NA	NA	NA	NA	XLOC_004822	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004822), lincRNA [TCONS_00010334]"	chr5:53999010-53961961	hs|5q11.2	Agilent_HUMAN_G3V2	TCONS_00010334	TCONS_00010334	chr5	 53961961	 53999010	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30067_PI429285431	3.1784663	P	3.3405225	P	0.893750345748739	0	lncRNA	31836-1_{1..422}	n334583|U70543|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221117_02|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221117_02|-1.1027100|-0.3315586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334583|U70543|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221117_02|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221117_02|-1.1027100|-0.3315586	chr6	  3848164	  3848585	-	NA	NA	NA	NA	FAM50B	NA	chr6:3849632-3851551	inner
CUST_17347_PI429285431	0.926487	A	0.9152536	A	1.00781679237938	0	lncRNA	19065-1_{1..405}	lnc-SORCS3-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SORCS3-6:3	chr10	108083113	108083517	+	lnc-SORCS3-6	lnc-SORCS3-6:3	XLOC_008604	linc-ADD3-7	NA	NA	NA	inter
CUST_28658_PI429285431	1.7048832	A	1.1201432	A	1.49976867921696	0	lncRNA	30350-1_{1..319}	n326037|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047275|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047275|-0.9701780|-0.2750206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326037|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047275|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047275|-0.9701780|-0.2750206	chr10	 26993140	 26993458	-	NA	NA	NA	NA	PDSS1	NA	chr10:26986595-27015094	inner
CUST_27276_PI429285431	0.9122499	A	0.90136296	A	1.00757479648047	0	lncRNA	28832-1_{1..599}	n324425|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317441|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317441|-1.2660100|-0.3196551	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324425|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317441|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317441|-1.2660100|-0.3196551	chr6	109187056	109187654	+	NA	NA	NA	NA	ARMC2	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70chr6:109177056-109207014"	NA	inner
CUST_3190_PI429285431	0.9288208	A	0.92393553	A	1.00339195081644	0	lncRNA	3169-2_{3001..3081}	"transcript_id ""ENST00000603837.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603837.1"" | genecode_v17"	chr8	 77319293	 77319373	+	ENSG00000271167.1	ENST00000603837.1	RP11-706J10.3	RP11-706J10.3-001	NA	NA	NA	inter
CUST_10758_PI429285431	0.9637402	A	1.205714	A	0.845587643495384	0	lncRNA	12294-1_{1..1357}	lnc-PFKP-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PFKP-9:1	chr10	  2612388	  2613744	+	lnc-PFKP-9	lnc-PFKP-9:1	XLOC_008342	linc-PFKP-3	NA	NA	NA	inter
CUST_2929_PI429285431	0.9718101	A	0.98411787	A	0.991505190464336	0	lncRNA	2910-1_{1..1267}	"transcript_id ""ENST00000605007.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605007.1"" | genecode_v17"	chr7	128330505	128331771	+	ENSG00000271344.1	ENST00000605007.1	RP11-274B21.9	RP11-274B21.9-001	FAM71F2	NA	chr7:128320505-128323375	inter
CUST_9719_PI429285431	1.3867836	A	0.93287504	A	1.36974616081479	0	lncRNA	11235-1_{1..526}	lnc-HMHB1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-HMHB1-2:1	chr5	142942056	142942581	+	lnc-HMHB1-2	lnc-HMHB1-2:1	XLOC_004592	linc-HMHB1	NA	NA	NA	inter
CUST_12015_PI429285431	1.0315967	A	2.4812398	A	0.36611198311507	0	lncRNA	13597-1_{1..463}	lnc-MGAT1-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MGAT1-2:12	chr5	180255314	180255776	-	lnc-MGAT1-2	lnc-MGAT1-2:12	XLOC_005110	linc-MGAT1-2	NA	NA	NA	inter
CUST_18116_PI429285431	2.2785766	A	2.904523	A	0.647994557009623	0	lncRNA	19850-1_{1..509}	lnc-NCOR2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCOR2-2:1	chr12	124726839	124727347	-	lnc-NCOR2-2	lnc-NCOR2-2:1	XLOC_010234	linc-CCDC92-1	ZNF664-FAM101A	NA	chr12:124716839-124737323	inner
CUST_26203_PI429285431	0.9252577	A	0.92486864	A	1.00026971220787	0	lncRNA	27714-1_{1..307}	lnc-EXTL3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-EXTL3-4:1	chr8	 28911175	 28911481	+	lnc-EXTL3-4	lnc-EXTL3-4:1	ENSG00000259599.1	CTD-2647L4.3	HMBOX1	NA	chr8:28901175-28910242	inter
CUST_20653_PI429285431	3.1128652	A	3.2387629	A	0.916433625723622	0	lncRNA	22292-1_{1..539}	lnc-AC027763.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC027763.2.1-2:1	chr17	  6882217	  6882755	-	lnc-AC027763.2.1-2	lnc-AC027763.2.1-2:1	ENSG00000263316.1	RP11-530N7.3	NA	NA	NA	inter
CUST_8105_PI429285431	2.6466308	A	2.132757	A	1.42787907025152	0	lncRNA	9710-1_{1..3000}	lnc-USP8-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP8-2:8	chr15	 50659561	 50662560	+	lnc-USP8-2	lnc-USP8-2:8	ENSG00000246338	XLOC_011248	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80"	NA	inter
LNCA_21_P0007695	3.6750183	P	4.061055	P	0.765228918386727	0	lncRNA	TCONS_00020749	NA	NA	NA	NA	XLOC_010037	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010037), lincRNA [TCONS_00020749]"	chr12:29301162-29295231	hs|12p11.22	Agilent_HUMAN_G3V2	TCONS_00020749	TCONS_00020749	chr12	 29295231	 29301162	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39679_PI429285431	8.867784	P	8.785259	P	1.0588696498423	0	lncRNA	40619-1_{1..1115}	n405311|NR_001450|lncRNA|Homosapiens||RefGeneNoncode|NR_001450||2.4783000|-0.2442503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405311|NR_001450|lncRNA|Homosapiens||RefGeneNoncode|NR_001450||2.4783000|-0.2442503	chr22	 32755894	 32757008	-	NA	NA	NA	NA	RFPL3	"hg19_refFlat_RFPL1:range=chr22:29834781-298381115'pad=0,hg19_refFlat_RFPL1:range=chr22:29834781-298381115'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_RFPL2:range=chr22:32586759-325984385'pad=0,hg19_refFlat_RFPL2:range=chr22:32586759-325984385'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60;hg19_refFlat_RFPL2:range=chr22:32586759-325891745'pad=0,hg19_refFlat_RFPL2:range=chr22:32586759-325891745'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60;hg19_refFlat_RFPL3:range=chr22:32754059-327568195'pad=0,hg19_refFlat_RFPL3:range=chr22:32754059-327568195'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_RFPL3:range=chr22:32754146-327568195'pad=0,hg19_refFlat_RFPL3:range=chr22:32754146-327568195'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_RFPL2:range=chr22:32586759-325892615'pad=0,hg19_refFlat_RFPL2:range=chr22:32586759-325892615'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60chr22:32750872-32757148"	NA	inner
CUST_27812_PI429285431	0.9154817	A	0.9093445	A	1.00426304390562	0	lncRNA	29398-1_{1..520}	n325040|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078284|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078284|-1.1809900|-0.3180400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325040|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078284|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078284|-1.1809900|-0.3180400	chr20	 21982830	 21983349	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3502_PI429285431	1.8249664	A	2.2502396	A	0.744697696436332	0	lncRNA	3473-1_{1..1748}	"transcript_id ""ENST00000605707.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605707.1"" | genecode_v17"	chr9	102128699	102130446	-	ENSG00000271086.1	ENST00000605707.1	RP11-13B9.5	RP11-13B9.5-006	NA	NA	NA	inter
CUST_24440_PI429285431	5.4616323	P	5.7509737	P	0.818275521592252	0	lncRNA	25993-1_{1..694}	lnc-TRIM63-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM63-1:3	chr1	 26498108	 26498801	-	lnc-TRIM63-1	lnc-TRIM63-1:3	ENSG00000236782.1	RP11-96L14.7	CNKSR1	"hg19_refFlat_ZNF593:range=chr1:26496475-264972075'pad=0,hg19_refFlat_ZNF593:range=chr1:26496475-264972075'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.30chr1:26503981-26508156"	NA	inter
CUST_28976_PI429285431	3.8977017	P	3.7208023	P	1.13045173729109	0	lncRNA	30697-2_{3001..3662}	n326457|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000036739|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000036739|2.7430600|-0.3297327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326457|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000036739|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000036739|2.7430600|-0.3297327	chr1	120843136	120843797	+	NA	NA	NA	NA	FAM72B	NA	chr1:120839005-120855681	inner
CUST_14984_PI429285431	4.8515105	P	4.6404443	P	1.15754333120225	0	lncRNA	16647-1_{1..1788}	lnc-CEP68-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEP68-1:2	chr2	 65264537	 65266324	+	lnc-CEP68-1	lnc-CEP68-1:2	XLOC_001500	linc-CEP68	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-65.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20"	NA	inter
CUST_39561_PI429285431	0.93052185	A	0.9088803	A	1.01511385576007	0	lncRNA	40505-1_{1..592}	n387512|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011gig.1||0.2657730|-0.1567104	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387512|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011gig.1||0.2657730|-0.1567104	chr6	  3266749	  3267340	+	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70chr6:3269207-3277543"	NA	inner
CUST_33607_PI429285431	13.018952	P	13.340515	P	0.800202477212266	0	lncRNA	35172-1_{1..270}	n340364|AF009268|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2825|NULL|-1.0252400|-0.1639631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340364|AF009268|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2825|NULL|-1.0252400|-0.1639631	chr5	  9800536	  9800805	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007779	1.574968	A	1.5127555	A	1.04406570047581	0	lncRNA	THC2723114	NA	NA	NA	NA	XLOC_010239	NA	NA	THC2723114	NA	"BROAD Institute lincRNA (XLOC_010239), lincRNA [TCONS_00020969]"	chr12:126478927-126478868	hs|12q24.32	Agilent_HUMAN_G3V2	THC2723114	THC2723114	chr12	126478868	126478927	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35764_PI429285431	3.671695	P	4.343586	P	0.627683417241889	0	lncRNA	37183-2_{3001..3367}	n344453|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1|NULL|-1.4816200|-0.2113345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344453|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1|NULL|-1.4816200|-0.2113345	chr15	 57595515	 57595881	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50"	NA	inter
CUST_29061_PI429285431	5.9224687	P	6.4047904	P	0.715824734303889	0	lncRNA	30789-1_{1..671}	n326551|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027201|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027201|-1.0289700|-0.2883775	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326551|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027201|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027201|-1.0289700|-0.2883775	chr1	 82453491	 82454161	-	NA	NA	NA	NA	LPHN2	NA	chr1:82443491-82458107	inner
CUST_10696_PI429285431	3.6115274	P	4.1720743	P	0.678045080183037	0	lncRNA	12231-1_{1..517}	lnc-AC068473.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AC068473.1-5:1	chr18	 76556480	 76556996	-	lnc-AC068473.1-5	lnc-AC068473.1-5:1	XLOC_012899	linc-MBP-8	NA	NA	NA	inter
CUST_43237_PI429285431	2.2751684	A	2.6137152	A	0.790837506776333	0	lncRNA	48054-1_{1..500}	ENST00000594077 havana:sense_intronic chromosome:GRCh37:19:17407005:17407504:-1 gene:ENSG00000269815 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000594077 havana:sense_intronic chromosome:GRCh37:19:17407005:17407504:-1 gene:ENSG00000269815 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 17407005	 17407504	-	ENSG00000269815	ENST00000594077	NA	NA	MRPL34	"hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TSPAN16:range=chr19:11406974-114375205'pad=0,hg19_refFlat_TSPAN16:range=chr19:11406974-114375205'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10chr19:17416477-17417504"	NA	inner
CUST_37277_PI429285431	1.2014736	A	0.91886795	A	1.21638982204273	0	lncRNA	38386-1_{1..536}	n345718|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1267|NULL|-1.2926100|-0.2695356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345718|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1267|NULL|-1.2926100|-0.2695356	chr8	130718355	130718890	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002332	1.3579627	A	2.2340584	A	0.54483991339622	0	lncRNA	TCONS_00003973	NA	NA	NA	NA	XLOC_001787	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001787), lincRNA [TCONS_00003973]"	chr2:192500216-192500275	hs|2q32.3	Agilent_HUMAN_G3V2	TCONS_00003973	TCONS_00003973	chr2	192500216	192500275	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31560_PI429285431	1.1172011	A	1.4212221	A	0.809991683233753	0	lncRNA	33318-1_{1..214}	n338053|S83307|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|440|NULL|-1.4709800|-0.6518149	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338053|S83307|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|440|NULL|-1.4709800|-0.6518149	chr1	 89647180	 89647393	+	NA	NA	NA	NA	GBP4	NA	chr1:89646831-89657394	inner
CUST_16258_PI429285431	0.92554855	A	0.91107315	A	1.01008408786294	0	lncRNA	17961-2_{3001..4368}	lnc-PDE6B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE6B-1:2	chr4	   578913	   580280	+	lnc-PDE6B-1	lnc-PDE6B-1:2	XLOC_003411	linc-PDE6B	NA	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
CUST_5624_PI429285431	7.342607	P	7.5953608	P	0.839292852591537	0	lncRNA	5552-1_{1..2198}	"transcript_id ""ENST00000512279.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512279.1"" | genecode_v17"	chr16	 76668895	 76671092	+	ENSG00000250514.1	ENST00000512279.1	RP11-96P7.1	RP11-96P7.1-001	NA	NA	NA	inter
CUST_16348_PI429285431	0.9252707	A	0.9170758	A	1.00569643516355	0	lncRNA	18048-1_{1..3000}	lnc-WDR25-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR25-2:1	chr14	101045026	101048025	+	lnc-WDR25-2	lnc-WDR25-2:1	XLOC_010929	linc-DLK1-3	BEGAIN	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40chr14:101035026-101036131"	NA	inter
LNCA_21_P0001198	3.2976706	P	3.3971238	P	0.933386690080424	0	lncRNA	ENST00000426575	NA	NA	NA	NA	XLOC_001099	NA	ENST00000426575	NA	NA	"BROAD Institute lincRNA (XLOC_001099), lincRNA [TCONS_00000691]"	chr1:175873965-175873906	hs|1q25.1	Agilent_HUMAN_G3V2	ENST00000426575	ENST00000426575	chr1	175873906	175873965	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36852_PI429285431	6.7860985	P	6.8380837	P	0.964608080040872	0	lncRNA	38014-4_{9001..12000}	n345322|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_871|NULL|-1.4390300|-0.1893230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345322|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_871|NULL|-1.4390300|-0.1893230	chr16	 85207652	 85210651	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_1718_PI429285431	1.7634034	A	2.1507444	A	0.76453740908349	0	lncRNA	1703-1_{1..2509}	"transcript_id ""ENST00000382007.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000382007.1"" | genecode_v17"	chr4	 27209127	 27211635	-	ENSG00000205830.1	ENST00000382007.1	AC024132.1	AC024132.1-001	NA	NA	NA	inter
CUST_36164_PI429285431	2.5426238	A	1.9783623	A	1.47863042056012	0	lncRNA	37437-1_{1..531}	n344725|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_274|NULL|-1.4402200|-0.0997378	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344725|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_274|NULL|-1.4402200|-0.0997378	chr2	 70351167	 70351697	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43569_PI429285431	0.9245838	A	0.9118732	A	1.00884924162219	0	lncRNA	48343-1_{1..1744}	"gi|374349243|ref|NR_046228.1| Homo sapiens ankyrin repeat domain 20 family, member A12, pseudogene (ANKRD20A12P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|374349243|ref|NR_046228.1| Homo sapiens ankyrin repeat domain 20 family, member A12, pseudogene (ANKRD20A12P), non-coding RNA"	Chr1	142697421	142699164	-	100874392	NR_046228.1	NA	NA	NA	NA	NA	inter
CUST_7666_PI429285431	0.9239708	A	0.9115313	A	1.00865968435169	0	lncRNA	9298-1_{1..556}	lnc-ACTR2-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACTR2-3:7	chr2	 65997147	 65997702	+	lnc-ACTR2-3	lnc-ACTR2-3:7	ENSG00000204929	XLOC_001504	NA	NA	NA	inter
CUST_34119_PI429285431	1.6772634	A	3.71185	A	0.244077869966746	0	lncRNA	35642-1_{1..779}	n340953|AL360187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3418|NULL|-0.5083120|-0.2237279	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340953|AL360187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3418|NULL|-0.5083120|-0.2237279	chr11	  5717299	  5718077	-	NA	NA	NA	NA	TRIM22	"hg19_refFlat_TRIM22:range=chr11:5717463-57308785'pad=0,hg19_refFlat_TRIM22:range=chr11:5717463-57308785'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10chr11:5710817-5728052"	NA	inner
CUST_13528_PI429285431	1.323945	A	0.90817064	A	1.33401451118376	0	lncRNA	15168-1_{1..1131}	lnc-DAOA-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DAOA-5:3	chr13	107283135	107284265	+	lnc-DAOA-5	lnc-DAOA-5:3	XLOC_010490	linc-ABHD13-1	NA	NA	NA	inter
CUST_8709_PI429285431	1.6456316	A	1.0799273	A	1.4801098982235	0	lncRNA	10253-1_{1..550}	lnc-DCTD-4:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DCTD-4:8	chr4	183006007	183006556	-	lnc-DCTD-4	lnc-DCTD-4:8	ENSG00000177822	AC108142.1	NA	NA	NA	inter
CUST_12875_PI429285431	1.123424	A	1.2677364	A	0.904810514742246	0	lncRNA	14501-1_{1..1643}	lnc-ALG14-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>lnc-ALG14-5:2	chr1	 95846188	 95847830	-	lnc-ALG14-5	lnc-ALG14-5:2	XLOC_000929	linc-ALG14-2	NA	NA	NA	inter
CUST_32525_PI429285431	3.5552077	P	4.4965267	P	0.520756555233691	0	lncRNA	34192-1_{1..390}	n339132|AF085911|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1562|NULL|0.0749479|-0.1780669	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339132|AF085911|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1562|NULL|0.0749479|-0.1780669	chr16	 24904061	 24904450	-	NA	NA	NA	NA	SLC5A11	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10chr16:24894061-24914463"	NA	inner
CUST_50378_PI429285431	6.8985953	P	6.7086234	P	1.1407414969328	0	lncRNA	54089-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00030325 range=chrX:106805389-106848479 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030325 range=chrX:106805389-106848479 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	106808389	106811388	+	NA	NA	NA	NA	FRMPD3	NA	chrX:106795389-106848479	inter
CUST_6966_PI429285431	0.9260534	A	1.44425	A	0.69824410811532	0	lncRNA	6914-1_{1..571}	"transcript_id ""ENST00000413244.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413244.1"" | genecode_v17"	chr22	 27727748	 27728318	+	ENSG00000230051.1	ENST00000413244.1	CTA-929C8.8	CTA-929C8.8-001	NA	NA	NA	inter
CUST_17686_PI429285431	5.2215776	P	5.529225	P	0.807958221456051	0	lncRNA	19415-1_{1..880}	lnc-ZDHHC7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZDHHC7-1:2	chr16	 84982768	 84983647	-	lnc-ZDHHC7-1	lnc-ZDHHC7-1:2	XLOC_012031	linc-COTL1-2	NA	NA	NA	inter
CUST_29388_PI429285431	5.441123	P	6.051705	P	0.654932441247133	0	lncRNA	31140-1_{1..374}	n332690|AF002713|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061691|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061691|2.7007900|-0.0399130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332690|AF002713|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061691|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061691|2.7007900|-0.0399130	chr20	  3766756	  3767129	-	NA	NA	NA	NA	CDC25B	NA	chr20:3776401-3777130	inner
CUST_1706_PI429285431	0.9228431	A	0.9215022	A	1.0009298731186	0	lncRNA	1690-1_{1..499}	"transcript_id ""ENST00000505628.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505628.1"" | genecode_v17"	chr4	 14236873	 14237371	+	ENSG00000249988.1	ENST00000505628.1	RP11-669M16.1	RP11-669M16.1-002	NA	NA	NA	inter
CUST_31317_PI429285431	1.5860615	A	0.973006	A	1.52949511592113	0	lncRNA	33100-1_{1..782}	n337783|BC040290|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|165|NULL|1.0227500|-0.1269570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n337783|BC040290|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|165|NULL|1.0227500|-0.1269570	chrX	 84189156	 84189937	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11327_PI429285431	5.594059	P	5.1392198	P	1.37063002869272	0	lncRNA	12890-1_{1..281}	lnc-RPS14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPS14-1:1	chr5	149865464	149865744	-	lnc-RPS14-1	lnc-RPS14-1:1	XLOC_005052	linc-RPS14	NA	NA	NA	inter
CUST_11416_PI429285431	4.0325065	P	4.403659	P	0.773164605813513	0	lncRNA	12982-1_{1..440}	lnc-SPAG16-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPAG16-1:2	chr2	214038790	214039229	+	lnc-SPAG16-1	lnc-SPAG16-1:2	XLOC_001835	linc-SPAG16-1	NA	NA	NA	inter
CUST_46196_PI429285431	3.922739	P	2.3990843	A	2.87518482589818	0	lncRNA	50441-2_{3001..3311}	"gi|401709977|ref|NR_073109.1| Homo sapiens NHL repeat containing 3 (NHLRC3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|401709977|ref|NR_073109.1| Homo sapiens NHL repeat containing 3 (NHLRC3), transcript variant 3, non-coding RNA"	Chr13	 39615448	 39615758	+	387921	NR_073109.1	NA	NA	NA	NA	NA	inter
CUST_36093_PI429285431	1.2599778	A	1.0676074	A	1.14263957243671	0	lncRNA	37393-2_{3001..6000}	n344678|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_227|NULL|-1.3041500|-0.3744234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n344678|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_227|NULL|-1.3041500|-0.3744234	chr6	 72086204	 72089203	-	NA	NA	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-22.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.50"	NA	inter
CUST_23726_PI429285431	1.1828572	A	0.89737135	A	1.21882065138546	0	lncRNA	25290-1_{1..764}	lnc-RP11-305N23.1.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-305N23.1.1-1:5	chr11	119346071	119346834	+	lnc-RP11-305N23.1.1-1	lnc-RP11-305N23.1.1-1:5	ENSG00000245248.3	RP11-305N23.1	NA	NA	NA	inter
CUST_2022_PI429285431	0.8903203	A	0.8919122	A	0.998897187548367	0	lncRNA	2013-1_{1..426}	"transcript_id ""ENST00000504165.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504165.1"" | genecode_v17"	chr4	189697811	189698236	+	ENSG00000251619.1	ENST00000504165.1	RP11-756P10.5	RP11-756P10.5-001	NA	NA	NA	inter
CUST_7840_PI429285431	1.0390598	A	1.242681	A	0.868368200031101	0	lncRNA	9464-1_{1..648}	lnc-TCF24-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TCF24-2:7	chr8	 67837672	 67838319	-	lnc-TCF24-2	lnc-TCF24-2:7	ENSG00000245910	SNHG6	C8orf45	NA	chr8:67827672-67834283	inter
CUST_15369_PI429285431	0.983225	A	0.93911016	A	1.0310503881932	0	lncRNA	17052-1_{1..474}	lnc-ZNF486-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF486-1:1	chr19	 20359548	 20360021	+	lnc-ZNF486-1	lnc-ZNF486-1:1	XLOC_012999	linc-ZNF85-4	NA	NA	NA	inter
CUST_14698_PI429285431	6.398054	P	6.683925	P	0.82024625104534	0	lncRNA	16362-1_{1..541}	lnc-HNF1A-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HNF1A-1:4	chr12	121345458	121345998	+	lnc-HNF1A-1	lnc-HNF1A-1:4	XLOC_009911	linc-HNF1A	SPPL3	NA	chr12:121335458-121342155	inter
CUST_51237_PI429285431	0.9126322	A	2.4529862	A	0.343801084301925	0	lncRNA	54851-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008419 range=chr15:23101594-23106207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008419 range=chr15:23101594-23106207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 23101594	 23104593	+	NA	NA	NA	NA	NA	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-57.20"	NA	inter
CUST_8649_PI429285431	5.4984226	P	5.5654287	P	0.954616977821777	0	lncRNA	10201-1_{1..794}	lnc-TRPV2-1:28	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRPV2-1:28	chr17	 16367033	 16367826	+	lnc-TRPV2-1	lnc-TRPV2-1:28	ENSG00000175061	NCRNA00188	C17orf76	NA	chr17:16357033-16377300	inner
CUST_32942_PI429285431	3.7177725	P	3.9280562	P	0.864367240359283	0	lncRNA	34563-1_{1..2727}	n339615|AL133103|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2059|NULL|-1.0127900|-0.3463096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339615|AL133103|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2059|NULL|-1.0127900|-0.3463096	chr3	140224459	140227185	-	NA	NA	NA	NA	CLSTN2	NA	chr3:140214459-140237631	inner
CUST_21396_PI429285431	6.982478	P	7.374475	P	0.76207399985657	0	lncRNA	23018-1_{1..3000}	lnc-GGCT-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GGCT-1:11	chr7	 30634327	 30637326	-	lnc-GGCT-1	lnc-GGCT-1:11	ENSG00000196295.5	AC005154.6	GARS	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr7:30634181-30644359"	NA	inner
CUST_38390_PI429285431	3.583487	P	4.1879535	P	0.657714554047128	0	lncRNA	39428-1_{1..864}	n382297|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ytf.1||2.5493900|-0.1898938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382297|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ytf.1||2.5493900|-0.1898938	chr15	 20487996	 20488859	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43164_PI429285431	0.9055582	A	0.9007155	A	1.00336234389055	0	lncRNA	47979-1_{1..1736}	ENST00000591237 havana:sense_intronic chromosome:GRCh37:17:40661802:40663537:1 gene:ENSG00000267632 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000591237 havana:sense_intronic chromosome:GRCh37:17:40661802:40663537:1 gene:ENSG00000267632 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr17	 40661802	 40663537	+	ENSG00000267632	ENST00000591237	NA	NA	ATP6V0A1	"hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70chr17:40651802-40673537"	NA	inner
CUST_25739_PI429285431	1.8077497	A	0.9644615	A	1.7941346888754	0	lncRNA	27265-1_{1..570}	lnc-TEX261-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TEX261-2:1	chr2	 71291813	 71292382	-	lnc-TEX261-2	lnc-TEX261-2:1	ENSG00000236469.1	AC007040.8	NAGK	NA	chr2:71295408-71301873	inter
CUST_8825_PI429285431	0.93064076	A	1.0266347	A	0.935627427899879	0	lncRNA	10366-1_{1..2685}	lnc-NHSL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NHSL1-1:1	chr6	139094652	139097336	-	lnc-NHSL1-1	lnc-NHSL1-1:1	ENSG00000246133	ENST00000500576	LOC100507462	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10chr6:139084652-139094816"	NA	inner
CUST_12863_PI429285431	1.216058	A	3.2759929	P	0.239826851505573	0	lncRNA	14490-1_{1..341}	lnc-ACCN1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACCN1-2:1	chr17	 32578892	 32579232	-	lnc-ACCN1-2	lnc-ACCN1-2:1	XLOC_012442	linc-ACCN1-3	CCL2	NA	chr17:32582296-32584222	inter
CUST_21127_PI429285431	6.901189	P	7.416692	P	0.69954899039803	0	lncRNA	22753-1_{1..1146}	lnc-SNX20-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNX20-4:1	chr16	 50587412	 50588557	-	lnc-SNX20-4	lnc-SNX20-4:1	ENSG00000260029.2	RP11-401P9.1	NKD1	NA	chr16:50582241-50597851	inner
LNCA_21_P0002540	0.9572259	A	3.181035	P	0.214075396103624	0	lncRNA	ENST00000440900	NA	NA	NA	NA	XLOC_002485	NA	ENST00000440900	THC2663614	NA	"BROAD Institute lincRNA (XLOC_002485), lincRNA [TCONS_00003497]"	chr2:217719190-217719131	hs|2q35	Agilent_HUMAN_G3V2	ENST00000440900	ENST00000440900	chr2	217719131	217719190	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32989_PI429285431	3.205893	P	3.0795267	A	1.09154098392562	0	lncRNA	34604-1_{1..454}	n339669|AF272982|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2113|NULL|-1.0384700|-0.1729653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339669|AF272982|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2113|NULL|-1.0384700|-0.1729653	chr20	 35973087	 35973540	+	NA	NA	NA	NA	SRC	NA	chr20:35973088-36021190	inner
CUST_24660_PI429285431	0.91113335	A	1.1158987	A	0.867679801180275	0	lncRNA	26209-1_{1..691}	lnc-ZBTB32-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZBTB32-2:3	chr19	 36203819	 36204509	+	lnc-ZBTB32-2	lnc-ZBTB32-2:3	ENSG00000241762.1	AC002314.3	MLL4	NA	chr19:36208921-36214444	inner
CUST_25676_PI429285431	9.740513	P	10.041883	P	0.811481438141557	0	lncRNA	27205-1_{1..372}	lnc-VGF-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VGF-1:2	chr7	100660696	100661067	-	lnc-VGF-1	lnc-VGF-1:2	ENSG00000227053.1	RP11-395B7.4	MUC17	NA	chr7:100663364-100670882	inner
CUST_23876_PI429285431	1.5602342	A	1.6446888	A	0.943141015893063	0	lncRNA	25435-1_{1..411}	lnc-NRIP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NRIP2-1:1	chr12	  2921728	  2922138	-	lnc-NRIP2-1	lnc-NRIP2-1:1	ENSG00000258325.1	RP4-816N1.6	ITFG2	"hg19_refFlat_ITFG2:range=chr12:2921927-29333595'pad=0,hg19_refFlat_ITFG2:range=chr12:2921927-29333595'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.50chr12:2921787-2932068"	NA	inner
CUST_1604_PI429285431	1.3843653	A	0.9278932	A	1.37218224088931	0	lncRNA	1590-1_{1..427}	"transcript_id ""ENST00000415940.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415940.1"" | genecode_v17"	chr3	187715210	187715636	-	ENSG00000225058.1	ENST00000415940.1	RP11-132N15.1	RP11-132N15.1-001	NA	NA	NA	inter
CUST_39982_PI429285431	0.9071448	A	0.9183248	A	0.992280563596745	0	lncRNA	40851-1_{1..1124}	n407068|NR_024562|lncRNA|Homosapiens||RefGeneNoncode|NR_024562||-0.6658760|-0.1801901	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407068|NR_024562|lncRNA|Homosapiens||RefGeneNoncode|NR_024562||-0.6658760|-0.1801901	chr19	 35549962	 35551085	-	NA	NA	NA	NA	HPN	"hg19_refFlat_HPN:range=chr19:35533411-355571915'pad=0,hg19_refFlat_HPN:range=chr19:35533411-355571915'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.30chr19:35539962-35557477"	NA	inter
CUST_43215_PI429285431	0.946432	A	0.925221	A	1.01481095594535	0	lncRNA	48029-1_{1..263}	ENST00000602474 havana:sense_intronic chromosome:GRCh37:12:124447102:124447364:-1 gene:ENSG00000270048 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602474 havana:sense_intronic chromosome:GRCh37:12:124447102:124447364:-1 gene:ENSG00000270048 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr12	124447102	124447364	-	ENSG00000270048	ENST00000602474	NA	NA	CCDC92	NA	chr12:124437102-124457163	inner
CUST_20899_PI429285431	1.5783044	A	1.0197024	A	1.47284131323567	0	lncRNA	22530-1_{1..1791}	lnc-ANKRD20A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ANKRD20A2-1:1	chr9	 42473936	 42475726	+	lnc-ANKRD20A2-1	lnc-ANKRD20A2-1:1	ENSG00000240240.2	RP11-146D12.2	CBWD7	NA	chr9:42478004-42484269	inter
CUST_20836_PI429285431	2.4594135	A	3.2220843	A	0.589404181196708	0	lncRNA	22467-1_{1..378}	lnc-PDHA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDHA1-1:1	chrX	 20158453	 20158830	+	lnc-PDHA1-1	lnc-PDHA1-1:1	ENSG00000225037.1	EIF1AX-AS1	RPS6KA3	NA	chrX:20168029-20168562	inner
CUST_2596_PI429285431	0.9326355	A	0.92616427	A	1.00449558980909	0	lncRNA	2584-1_{1..3000}	"transcript_id ""ENST00000441184.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000441184.1"" | genecode_v17"	chr6	108444837	108447836	+	ENSG00000225174.1	ENST00000441184.1	OSTM1-AS1	OSTM1-AS1-001	NR2E1	NA	chr6:108487215-108490596	inter
CUST_51412_PI429285431	0.95465696	A	0.91698897	A	1.02645329899649	0	lncRNA	54989-3_{6001..7281}	hg19_lincRNAsTranscripts_TCONS_l2_00009917 range=chr16:75602-87928 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009917 range=chr16:75602-87928 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	    81602	    82882	-	NA	NA	NA	NA	POLR3K	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-62.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70chr16:96979-97928"	NA	inter
CUST_50228_PI429285431	2.8746796	A	2.5948668	A	1.21403734414584	0	lncRNA	53952-1_{1..755}	hg19_lincRNAsTranscripts_TCONS_l2_00029330 range=chr9:67284039-67289362 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029330 range=chr9:67284039-67289362 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 67284039	 67284793	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6672_PI429285431	0.91097045	A	0.91714483	A	0.995729391007918	0	lncRNA	6619-1_{1..805}	"transcript_id ""ENST00000432834.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432834.1"" | genecode_v17"	chr20	 24660183	 24660987	+	ENSG00000231015.1	ENST00000432834.1	RP5-860P4.2	RP5-860P4.2-001	NA	NA	NA	inter
CUST_5730_PI429285431	0.930776	A	1.3882798	A	0.728245203817465	0	lncRNA	5654-1_{1..2170}	"transcript_id ""ENST00000578952.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578952.1"" | genecode_v17"	chr17	 12620322	 12622491	+	ENSG00000266221.1	ENST00000578952.1	RP11-746E8.1	RP11-746E8.1-001	MYOCD	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-20.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30chr17:12610322-12632491"	NA	inner
CUST_9515_PI429285431	3.2195559	A	0.9273157	A	4.89816101590434	0	lncRNA	11024-1_{1..3000}	lnc-ITPR3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ITPR3-1:3	chr6	 33892111	 33895110	+	lnc-ITPR3-1	lnc-ITPR3-1:3	XLOC_005263	linc-HMGA1-2	NA	NA	NA	inter
CUST_51733_PI429285431	0.9147603	A	1.2658352	A	0.783999750320629	0	lncRNA	55286-1_{1..2477}	hg19_lincRNAsTranscripts_TCONS_l2_00012204 range=chr18:15313555-15330114 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012204 range=chr18:15313555-15330114 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 15313555	 15316031	-	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30"	NA	inter
CUST_28297_PI429285431	1.7420554	A	2.2302802	A	0.712901766040208	0	lncRNA	29940-1_{1..385}	n325600|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000072601|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000072601|-0.9088650|-0.0835165	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325600|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000072601|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000072601|-0.9088650|-0.0835165	chr14	100607896	100608280	+	NA	NA	NA	NA	EVL	NA	chr14:100597896-100610573	inner
CUST_48890_PI429285431	7.7279663	P	7.406854	P	1.24929336739954	0	lncRNA	52729-1_{1..411}	hg19_lincRNAsTranscripts_TCONS_l2_00019378 range=chr3:90274756-90283642 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019378 range=chr3:90274756-90283642 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 90274756	 90275166	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14778_PI429285431	1.0368612	A	3.2117915	A	0.221452578413506	0	lncRNA	16439-1_{1..274}	lnc-SHOC2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SHOC2-2:1	chr10	112782246	112782519	+	lnc-SHOC2-2	lnc-SHOC2-2:1	XLOC_008614	linc-ADRA2A-1	SHOC2	NA	chr10:112772246-112773425	inter
CUST_51154_PI429285431	6.430787	P	6.840622	P	0.752709455624972	0	lncRNA	54776-1_{1..706}	hg19_lincRNAsTranscripts_TCONS_l2_00008015 range=chr14:35396821-35433252 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008015 range=chr14:35396821-35433252 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr14	 35396821	 35397526	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_40700_PI429285431	0.9270727	A	0.9296927	A	0.998185602399994	0	lncRNA	41439-1_{1..1360}	n410262|NR_037174_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037174_7||-0.8867210|-0.2445209	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410262|NR_037174_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037174_7||-0.8867210|-0.2445209	chr6	  4256390	  4257749	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50301_PI429285431	13.678255	P	13.916917	P	0.847530974420335	0	lncRNA	54019-1_{1..438}	hg19_lincRNAsTranscripts_TCONS_l2_00029476 range=chr9:97109392-97109900 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029476 range=chr9:97109392-97109900 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 97109392	 97109829	-	NA	NA	NA	NA	LOC728026	NA	chr9:97109516-97109845	inter
CUST_9637_PI429285431	0.9235795	A	0.91850615	A	1.00352276866402	0	lncRNA	11155-1_{1..740}	lnc-SDC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SDC2-1:1	chr8	 97469517	 97470256	+	lnc-SDC2-1	lnc-SDC2-1:1	XLOC_006876	linc-SDC2	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90"	NA	inter
CUST_50405_PI429285431	0.9061445	A	0.9020532	A	1.00283989795163	0	lncRNA	54109-1_{1..470}	hg19_lincRNAsTranscripts_TCONS_l2_00030123 range=chrX:2527516-2537621 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030123 range=chrX:2527516-2537621 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	  2527516	  2527985	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002822	2.5941696	A	3.127852	A	0.690789280134897	0	lncRNA	ENST00000439804	NA	NA	NA	NA	XLOC_002968	NA	ENST00000439804	THC2650616	NA	"BROAD Institute lincRNA (XLOC_002968), lincRNA [TCONS_00005690]"	chr3:191308086-191308145	hs|3q28	Agilent_HUMAN_G3V2	ENST00000439804	ENST00000439804	chr3	191308086	191308145	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31678_PI429285431	0.9011372	A	0.89887005	A	1.00157270403428	0	lncRNA	33426-1_{1..1492}	n338203|AK129765|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|595|NULL|-0.4591180|-0.4786692	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338203|AK129765|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|595|NULL|-0.4591180|-0.4786692	chr1	118036136	118037627	+	NA	NA	NA	NA	MAN1A2	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60chr1:118026136-118047628"	NA	inner
CUST_44233_PI429285431	10.054023	P	10.907259	P	0.553541734964814	0	lncRNA	48882-1_{1..1951}	"gi|292658762|ref|NR_033429.1| Homo sapiens ankyrin repeat and BTB (POZ) domain containing 1 (ABTB1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|292658762|ref|NR_033429.1| Homo sapiens ankyrin repeat and BTB (POZ) domain containing 1 (ABTB1), transcript variant 3, non-coding RNA"	Chr3	127391781	127393731	+	80325	NR_033429.1	NA	NA	NA	NA	NA	inter
CUST_22025_PI429285431	8.412299	P	8.676249	P	0.832804633189573	0	lncRNA	23633-1_{1..867}	lnc-EIF6-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF6-1:4	chr20	 33865849	 33866715	-	lnc-EIF6-1	lnc-EIF6-1:4	ENSG00000126005.10	MT1P3	MMP24	NA	chr20:33855849-33864804	inter
CUST_27618_PI429285431	1.1198812	A	1.08636	A	1.02350716365487	0	lncRNA	29196-1_{1..424}	n324822|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000182259|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000182259|-1.3624500|-0.3466452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324822|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000182259|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000182259|-1.3624500|-0.3466452	chr21	 30503339	 30503762	-	NA	NA	NA	NA	C21orf7	NA	chr21:30493339-30515972	inner
CUST_9108_PI429285431	3.123056	P	4.3313823	P	0.432770390312079	0	lncRNA	10629-1_{1..3000}	lnc-ZNF582-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF582-2:1	chr19	 56985381	 56988380	-	lnc-ZNF582-2	lnc-ZNF582-2:1	ENSG00000250660	ENST00000504904	ZNF667	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr19:56975381-56988770"	NA	inter
CUST_10437_PI429285431	0.91160387	A	1.0535493	A	0.906296218311207	0	lncRNA	11965-1_{1..1016}	lnc-RP11-778D12.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-778D12.2.1-2:1	chr8	107167486	107168501	-	lnc-RP11-778D12.2.1-2	lnc-RP11-778D12.2.1-2:1	XLOC_007180	linc-LRP12-1	NA	NA	NA	inter
CUST_43035_PI429285431	6.7394767	P	7.1776733	P	0.738056618993584	0	lncRNA	46586-1_{1..133}	ENST00000391127 ncrna:snRNA chromosome:GRCh37:8:81661796:81661928:-1 gene:ENSG00000212429 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391127 ncrna:snRNA chromosome:GRCh37:8:81661796:81661928:-1 gene:ENSG00000212429 gene_biotype:snRNA transcript_biotype:snRNA	chr8	 81661796	 81661928	-	ENSG00000212429	ENST00000391127	NA	NA	ZNF704	NA	chr8:81651796-81671928	inner
CUST_11941_PI429285431	2.2761145	A	2.7453501	A	0.722347226071812	0	lncRNA	13521-1_{1..454}	lnc-VPS13C-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VPS13C-1:2	chr15	 61945388	 61945841	-	lnc-VPS13C-1	lnc-VPS13C-1:2	XLOC_011491	linc-RORA	NA	NA	NA	inter
CUST_48276_PI429285431	8.250315	P	8.290697	P	0.972397439766352	0	lncRNA	52137-1_{1..2346}	hg19_lincRNAsTranscripts_TCONS_l2_00001045 range=chr1:16944758-16961667 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001045 range=chr1:16944758-16961667 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 16944758	 16947103	-	NA	NA	NA	NA	NBPF1	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30chr1:16934758-16939982"	NA	inter
CUST_27938_PI429285431	10.358014	P	10.464739	P	0.928693858856814	0	lncRNA	29539-1_{1..1875}	n325182|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330149|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330149|-0.9172280|-0.2312502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325182|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330149|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330149|-0.9172280|-0.2312502	chr2	108305125	108306999	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16130_PI429285431	2.6452165	A	2.8894126	A	0.844286119052063	0	lncRNA	17836-1_{1..1538}	lnc-SHE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SHE-1:1	chr1	154444780	154446317	-	lnc-SHE-1	lnc-SHE-1:1	XLOC_001035	linc-C1orf43-2	IL6R	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-57.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.00chr1:154434780-154441926"	NA	inter
CUST_19990_PI429285431	2.9744563	A	3.6648152	P	0.619699667781776	0	lncRNA	21643-1_{1..1751}	lnc-B4GALT7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-B4GALT7-1:1	chr5	177045917	177047667	+	lnc-B4GALT7-1	lnc-B4GALT7-1:1	ENSG00000247679.2	RP11-1277A3.1	B4GALT7	NA	chr5:177035917-177037348	inter
CUST_20502_PI429285431	7.815621	P	7.9939203	P	0.88374417140565	0	lncRNA	22144-1_{1..272}	lnc-YIF1A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YIF1A-3:1	chr11	 66035526	 66035797	-	lnc-YIF1A-3	lnc-YIF1A-3:1	ENSG00000254762.1	RP11-867G23.2	KLC2	NA	chr11:66025526-66035332	inter
CUST_36_PI429285431	4.267151	P	4.334939	P	0.954099742534756	0	lncRNA	35-1_{1..590}	"transcript_id ""ENST00000374801.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000374801.3"" | genecode_v17"	chr9	105281918	105282507	+	ENSG00000204250.3	ENST00000374801.3	LINC00587	LINC00587-001	NA	NA	NA	inter
CUST_19399_PI429285431	1.7186412	A	2.494592	A	0.584003613149492	0	lncRNA	21061-1_{1..485}	lnc-APBB1IP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-APBB1IP-2:1	chr10	 27007662	 27008146	+	lnc-APBB1IP-2	lnc-APBB1IP-2:1	ENSG00000235843.1	RP13-16H11.5	PDSS1	NA	chr10:26997662-27017707	inner
CUST_14580_PI429285431	1.260043	A	0.9343335	A	1.25328063537527	0	lncRNA	16246-1_{1..661}	lnc-ELOVL1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELOVL1-1:2	chr1	 43824090	 43824750	-	lnc-ELOVL1-1	lnc-ELOVL1-1:2	XLOC_000808	linc-C1orf210	MPL	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30chr1:43814090-43820135"	NA	inter
CUST_40007_PI429285431	4.800996	P	4.89715	P	0.935523630344059	0	lncRNA	40870-1_{1..3000}	n407156|NR_026570|lncRNA|Homosapiens||RefGeneNoncode|NR_026570||4.0157400|-0.2603840	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407156|NR_026570|lncRNA|Homosapiens||RefGeneNoncode|NR_026570||4.0157400|-0.2603840	chr18	 32621323	 32624322	+	NA	NA	NA	NA	MAPRE2	NA	chr18:32611323-32722378	inter
CUST_14365_PI429285431	2.163724	A	2.6203172	A	0.728705002588621	0	lncRNA	16024-1_{1..409}	lnc-ZNF248-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF248-1:2	chr10	 38065194	 38065602	-	lnc-ZNF248-1	lnc-ZNF248-1:2	XLOC_008781	linc-MTRNR2L7	NA	NA	NA	inter
CUST_38621_PI429285431	3.8829894	P	4.4080386	P	0.69493541024506	0	lncRNA	39625-1_{1..1247}	n383778|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002umb.1||-1.2398600|-0.1985030	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383778|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002umb.1||-1.2398600|-0.1985030	chr2	179278389	179279635	+	NA	NA	NA	NA	PRKRA	NA	chr2:179296141-179308394	inner
CUST_1098_PI429285431	0.9335527	A	1.0037291	A	0.952521525009123	0	lncRNA	1087-1_{1..1073}	"transcript_id ""ENST00000597469.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597469.1"" | genecode_v17"	chr2	145425552	145426624	+	ENSG00000226674.3	ENST00000597469.1	AC074093.1	AC074093.1-034	NA	NA	NA	inter
CUST_45650_PI429285431	0.93586725	A	1.0342969	A	0.934049135644134	0	lncRNA	50027-1_{1..2102}	"gi|337298926|ref|NR_038986.1| Homo sapiens GRID1 antisense RNA 1 (GRID1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|337298926|ref|NR_038986.1| Homo sapiens GRID1 antisense RNA 1 (GRID1-AS1), non-coding RNA"	Chr10	 87337488	 87339589	+	100507470	NR_038986.1	NA	NA	NA	NA	NA	inter
CUST_15782_PI429285431	1.9300854	A	1.7794096	A	1.11008934818885	0	lncRNA	17472-1_{1..459}	lnc-CCDC140-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC140-4:1	chr2	222565094	222565552	+	lnc-CCDC140-4	lnc-CCDC140-4:1	XLOC_001876	linc-CCDC140-3	NA	NA	NA	inter
CUST_41527_PI429285431	3.2725787	P	2.9779928	P	1.22653287223656	0	lncRNA	42777-1_{1..60}	ENST00000578964 ncrna:miRNA chromosome:GRCh37:16:2320714:2320773:1 gene:ENSG00000266643 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578964 ncrna:miRNA chromosome:GRCh37:16:2320714:2320773:1 gene:ENSG00000266643 gene_biotype:miRNA transcript_biotype:miRNA	chr16	  2320714	  2320773	+	ENSG00000266643	ENST00000578964	NA	NA	ABCA3	NA	chr16:2325879-2330773	inter
CUST_48603_PI429285431	12.187981	P	12.228191	P	0.972513377178845	0	lncRNA	52449-1_{1..623}	hg19_lincRNAsTranscripts_TCONS_l2_00013610 range=chr2:45220642-45224037 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013610 range=chr2:45220642-45224037 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 45220642	 45221264	+	NA	NA	NA	NA	SIX2	NA	chr2:45232324-45234037	inter
CUST_23772_PI429285431	5.8388004	P	6.043794	P	0.867542535685373	0	lncRNA	25335-1_{1..945}	lnc-C4BPA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C4BPA-1:1	chr1	207357007	207357951	+	lnc-C4BPA-1	lnc-C4BPA-1:1	ENSG00000243636.1	RP11-164O23.7	NA	NA	NA	inter
CUST_52108_PI429285431	10.03823	P	9.606985	P	1.34839669845042	0	lncRNA	55633-1_{1..867}	hg19_lincRNAsTranscripts_TCONS_l2_00017872 range=chr22:18762596-18780033 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017872 range=chr22:18762596-18780033 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 18762596	 18763462	-	NA	NA	NA	NA	LOC100132900	NA	chr22:18781949-18790033	inter
CUST_43415_PI429285431	9.874014	P	10.262789	P	0.763777857047517	0	lncRNA	48227-1_{1..1337}	"gi|392841222|ref|NR_052852.1| Homo sapiens MARCKS-like 1 (MARCKSL1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392841222|ref|NR_052852.1| Homo sapiens MARCKS-like 1 (MARCKSL1), transcript variant 2, non-coding RNA"	Chr1	 32799430	 32800766	-	65108	NR_052852.1	NA	NA	NA	NA	NA	inter
CUST_6371_PI429285431	0.9298455	A	0.9259137	A	1.00272903313435	0	lncRNA	6297-1_{1..376}	"transcript_id ""ENST00000601007.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601007.1"" | genecode_v17"	chr19	 17516913	 17517288	+	ENSG00000269640.1	ENST00000601007.1	CTD-2521M24.9	CTD-2521M24.9-011	FAM125A	NA	chr19:17527840-17536140	inter
CUST_10351_PI429285431	5.946694	P	6.2390337	P	0.816576695610458	0	lncRNA	11879-1_{1..371}	lnc-AC069257.9.1-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC069257.9.1-6:3	chr3	195366404	195366774	+	lnc-AC069257.9.1-6	lnc-AC069257.9.1-6:3	XLOC_002995	linc-MUC20-3	NA	"hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40"	NA	inter
CUST_24545_PI429285431	6.1447372	P	6.624119	P	0.717284917325058	0	lncRNA	26095-1_{1..306}	lnc-PMEL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PMEL-1:1	chr12	 56347702	 56348007	-	lnc-PMEL-1	lnc-PMEL-1:1	ENSG00000258862.1	RP11-973D8.3	DGKA	"hg19_refFlat_DGKA:range=chr12:56330288-563475525'pad=0,hg19_refFlat_DGKA:range=chr12:56330288-563475525'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.40chr12:56337702-56347807"	NA	inner
CUST_36305_PI429285431	1.6138272	A	1.2945654	A	1.24769196495722	0	lncRNA	37537-1_{1..1394}	n344832|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_381|NULL|-1.3374700|-0.3608872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344832|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_381|NULL|-1.3374700|-0.3608872	chr5	 80189372	 80190765	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21573_PI429285431	2.6773772	A	2.3240535	A	1.27750036202348	0	lncRNA	23187-1_{1..414}	lnc-C8orf56-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C8orf56-3:1	chr8	104033415	104033828	-	lnc-C8orf56-3	lnc-C8orf56-3:1	ENSG00000254236.1	KB-1639H6.2	ATP6V1C1	NA	chr8:104028972-104043656	inner
CUST_20490_PI429285431	6.965498	P	5.7401934	P	2.33804808325828	0	lncRNA	22132-2_{3001..3370}	lnc-BLID-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-BLID-1:4	chr11	121975155	121975524	-	lnc-BLID-1	lnc-BLID-1:4	ENSG00000255248.2	RP11-166D19.1	NA	NA	NA	inter
CUST_7971_PI429285431	0.9101764	A	0.9022202	A	1.00553005219701	0	lncRNA	9583-1_{1..572}	lnc-GIMAP8-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GIMAP8-1:3	chr7	150139637	150140208	+	lnc-GIMAP8-1	lnc-GIMAP8-1:3	ENSG00000242258	XLOC_006293	GIMAP8	NA	chr7:150147962-150149980	inter
CUST_21723_PI429285431	9.69607	P	9.822389	P	0.916166045183736	0	lncRNA	23333-1_{1..570}	lnc-KIAA1967-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1967-2:1	chr8	 22656049	 22656618	+	lnc-KIAA1967-2	lnc-KIAA1967-2:1	ENSG00000253125.1	RP11-459E5.1	PEBP4	NA	chr8:22646049-22666129	inner
CUST_11109_PI429285431	2.035109	A	2.6214592	A	0.666025721743688	0	lncRNA	12665-1_{1..758}	lnc-BCKDHB-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-BCKDHB-1:8	chr6	 81172589	 81173346	+	lnc-BCKDHB-1	lnc-BCKDHB-1:8	XLOC_005365	linc-TPBG-3	NA	NA	NA	inter
CUST_46070_PI429285431	12.307793	P	11.199053	P	2.15657217466569	0	lncRNA	50342-1_{1..1102}	"gi|350994450|ref|NR_045277.1| Homo sapiens nascent polypeptide-associated complex alpha subunit (NACA), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|350994450|ref|NR_045277.1| Homo sapiens nascent polypeptide-associated complex alpha subunit (NACA), transcript variant 3, non-coding RNA"	Chr12	 57106211	 57107312	-	4666	NR_045277.1	NA	NA	NA	NA	NA	inter
CUST_51364_PI429285431	7.4542923	P	6.8988295	P	1.46964000130338	0	lncRNA	54960-1_{1..592}	hg19_lincRNAsTranscripts_TCONS_l2_00009254 range=chr15:85089254-85113799 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009254 range=chr15:85089254-85113799 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 85089254	 85089845	-	NA	NA	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20"	NA	inter
CUST_41922_PI429285431	4.3358765	P	5.0119314	P	0.625874411986516	0	lncRNA	43668-1_{1..61}	ENST00000585290 ncrna:miRNA chromosome:GRCh37:5:153975572:153975632:-1 gene:ENSG00000264760 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585290 ncrna:miRNA chromosome:GRCh37:5:153975572:153975632:-1 gene:ENSG00000264760 gene_biotype:miRNA transcript_biotype:miRNA	chr5	153975572	153975632	-	ENSG00000264760	ENST00000585290	NA	NA	NA	NA	NA	inter
CUST_12789_PI429285431	0.92955476	A	1.8650088	A	0.522877885676847	0	lncRNA	14416-2_{3001..4535}	lnc-CDKN2C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDKN2C-1:1	chr1	 51478180	 51479714	+	lnc-CDKN2C-1	lnc-CDKN2C-1:1	XLOC_000190	linc-C1orf185	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00"	NA	inter
CUST_33543_PI429285431	0.9291198	A	1.7026612	A	0.584979754257266	0	lncRNA	35111-1_{1..3000}	n340292|AK096134|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2753|NULL|-1.1725000|-0.2701656	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340292|AK096134|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2753|NULL|-1.1725000|-0.2701656	chr4	185814153	185817152	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18774_PI429285431	1.0733483	A	0.9132867	A	1.11733484486757	0	lncRNA	20470-1_{1..328}	lnc-EIF3M-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EIF3M-2:3	chr11	 32458341	 32458668	+	lnc-EIF3M-2	lnc-EIF3M-2:3	ENSG00000183242	WT1-AS	WT1	NA	chr11:32448341-32457081	inter
CUST_31012_PI429285431	4.505369	P	4.503154	P	1.00153650021364	0	lncRNA	32800-1_{1..272}	n337210|BC108923|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386495|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386495|-0.9871960|-0.3696441	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337210|BC108923|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386495|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386495|-0.9871960|-0.3696441	chr13	 44774772	 44775043	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2836_PI429285431	1.0566158	A	1.3179319	A	0.834326457010398	0	lncRNA	2820-1_{1..679}	"transcript_id ""ENST00000458615.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458615.1"" | genecode_v17"	chr7	 54398390	 54399068	+	ENSG00000231427.1	ENST00000458615.1	RP11-436F9.1	RP11-436F9.1-001	NA	NA	NA	inter
LNCA_21_P0002258	1.9803944	A	1.0923246	A	1.85069839379458	0	lncRNA	TCONS_00003791	NA	NA	NA	NA	XLOC_001588	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001588), lincRNA [TCONS_00003791]"	chr2:100108099-100124361	hs|2q11.2	Agilent_HUMAN_G3V2	TCONS_00003791	TCONS_00003791	chr2	100108099	100124361	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44455_PI429285431	0.9114382	A	0.9028712	A	1.0059558579081	0	lncRNA	49059-2_{3001..3814}	"gi|359279889|ref|NR_045583.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 12, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|359279889|ref|NR_045583.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 12, non-coding RNA"	Chr4	159445866	159446679	+	59350	NR_045583.1	NA	NA	NA	NA	NA	inter
CUST_17180_PI429285431	2.1496437	A	2.6800132	A	0.692377381115564	0	lncRNA	18891-1_{1..406}	lnc-C22orf26-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C22orf26-2:11	chr22	 46439443	 46439848	-	lnc-C22orf26-2	lnc-C22orf26-2:11	XLOC_014404	linc-WNT7B-2	C22orf26	NA	chr22:46446339-46449755	inter
CUST_11252_PI429285431	0.9127883	A	1.0586967	A	0.903810109895509	0	lncRNA	12810-1_{1..488}	lnc-ATPAF1-AS1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATPAF1-AS1-2:1	chr1	 47233197	 47233684	+	lnc-ATPAF1-AS1-2	lnc-ATPAF1-AS1-2:1	XLOC_000173	linc-CYP4B1-1	NA	NA	NA	inter
CUST_18982_PI429285431	5.5160904	P	5.78255	P	0.831357210348621	0	lncRNA	20674-1_{1..396}	lnc-FBXO25-5:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXO25-5:10	chr8	  1212415	  1212810	+	lnc-FBXO25-5	lnc-FBXO25-5:10	ENSG00000254269	CTD-2281E23.2	NA	NA	NA	inter
CUST_43418_PI429285431	10.924032	P	10.854634	P	1.04927875488559	0	lncRNA	48230-1_{1..952}	"gi|401461825|ref|NR_073098.1| Homo sapiens trafficking protein particle complex 3 (TRAPPC3), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|401461825|ref|NR_073098.1| Homo sapiens trafficking protein particle complex 3 (TRAPPC3), transcript variant 6, non-coding RNA"	Chr1	 36602170	 36603121	-	27095	NR_073098.1	NA	NA	NA	NA	NA	inter
CUST_26269_PI429285431	2.3799403	A	2.4820397	A	0.931676235691023	0	lncRNA	27775-1_{1..476}	lnc-CXorf40B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CXorf40B-1:1	chrX	149009804	149010279	-	lnc-CXorf40B-1	lnc-CXorf40B-1:1	ENSG00000230899.1	RP5-869M20.2	MAGEA8	NA	chrX:149009941-149014609	inter
CUST_37875_PI429285431	3.2426834	A	3.7399747	P	0.708435640898294	0	lncRNA	38966-3_{6001..7192}	n346410|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1960|NULL|-1.5084800|-0.2385442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346410|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1960|NULL|-1.5084800|-0.2385442	chr14	106055138	106056329	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_144_PI429285431	3.2463725	P	3.6420608	P	0.760126638843661	0	lncRNA	135-1_{1..3000}	"transcript_id ""ENST00000412674.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000412674.1"" | genecode_v17"	chr1	  4000677	  4003676	+	ENSG00000233304.1	ENST00000412674.1	RP13-614K11.1	RP13-614K11.1-001	NA	NA	NA	inter
CUST_34899_PI429285431	8.345894	P	8.420546	P	0.949571144338826	0	lncRNA	36324-1_{1..2047}	n341815|AK093220|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4294|NULL|-1.0583200|-0.2008994	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341815|AK093220|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4294|NULL|-1.0583200|-0.2008994	chr9	140954805	140956851	-	NA	NA	NA	NA	CACNA1B	NA	chr9:140944805-140966852	inner
CUST_4327_PI429285431	0.9293618	A	1.3337533	A	0.755554903576938	0	lncRNA	4282-1_{1..469}	"transcript_id ""ENST00000551210.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551210.1"" | genecode_v17"	chr12	 74679478	 74679946	-	ENSG00000251138.2	ENST00000551210.1	RP11-81H3.2	RP11-81H3.2-004	NA	"hg19_refFlat_VENTX:range=chr10:135051419-1350538105'pad=0,hg19_refFlat_VENTX:range=chr10:135051419-1350538105'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20"	NA	inter
CUST_18145_PI429285431	4.397423	P	4.4739447	P	0.948341318791819	0	lncRNA	19880-1_{1..581}	lnc-PLCD1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLCD1-1:2	chr3	 37903192	 37903772	-	lnc-PLCD1-1	lnc-PLCD1-1:2	ENSG00000235257	AC093415.2	CTDSPL	NA	chr3:37903669-37913265	inter
CUST_49550_PI429285431	4.9803762	P	4.9882307	P	0.994570468946081	0	lncRNA	53341-1_{1..906}	hg19_lincRNAsTranscripts_TCONS_l2_00024811 range=chr6:69343836-69344947 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024811 range=chr6:69343836-69344947 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 69343836	 69344741	-	NA	NA	NA	NA	BAI3	NA	chr6:69345632-69354947	inter
CUST_13267_PI429285431	0.9148165	A	0.9000712	A	1.01027307249952	0	lncRNA	14899-1_{1..409}	lnc-DDX1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DDX1-1:2	chr2	 15713893	 15714301	+	lnc-DDX1-1	lnc-DDX1-1:2	XLOC_001361	linc-DDX1	DDX1	NA	chr2:15703893-15723992	inter
CUST_35160_PI429285431	1.2911899	A	1.1251464	A	1.12197730977076	0	lncRNA	36562-1_{1..2356}	n342132|AK054852|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4616|NULL|-1.3871100|-0.4259510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342132|AK054852|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4616|NULL|-1.3871100|-0.4259510	chr6	134309209	134311564	+	NA	NA	NA	NA	SLC2A12	NA	chr6:134308719-134321566	inner
CUST_12807_PI429285431	3.5886123	P	3.6913176	P	0.931285034437471	0	lncRNA	14435-1_{1..287}	lnc-TRH-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRH-2:1	chr3	129872167	129872453	+	lnc-TRH-2	lnc-TRH-2:1	XLOC_002821	linc-COL6A5-4	NA	NA	NA	inter
CUST_34701_PI429285431	0.92399436	A	0.9162618	A	1.00537419159881	0	lncRNA	36150-1_{1..1471}	n341606|BC038572|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4077|NULL|-1.0167000|-0.2452998	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341606|BC038572|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4077|NULL|-1.0167000|-0.2452998	chr8	127337739	127339209	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6815_PI429285431	0.9155152	A	1.0858953	A	0.888608532859619	0	lncRNA	6763-1_{1..693}	"transcript_id ""ENST00000448063.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448063.1"" | genecode_v17"	chr21	 25527484	 25528176	-	ENSG00000224018.1	ENST00000448063.1	AP000470.2	AP000470.2-001	NA	NA	NA	inter
CUST_3841_PI429285431	2.496786	A	3.279529	P	0.581260589615595	0	lncRNA	3808-1_{1..475}	"transcript_id ""ENST00000441365.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441365.2"" | genecode_v17"	chr10	134596683	134597157	-	ENSG00000234531.2	ENST00000441365.2	RP11-288G11.3	RP11-288G11.3-001	INPP5A	NA	chr10:134586683-134596984	inner
CUST_31463_PI429285431	4.1430817	P	4.236747	P	0.937138834454544	0	lncRNA	33230-1_{1..1208}	n337940|BC033363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|325|NULL|-1.0363200|-0.2162091	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n337940|BC033363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|325|NULL|-1.0363200|-0.2162091	chr1	 53704281	 53705488	+	NA	NA	NA	NA	LRP8	NA	chr1:53708036-53718455	inner
CUST_9752_PI429285431	3.2204072	P	3.4221919	P	0.869474306048306	0	lncRNA	11269-1_{1..594}	lnc-TXN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TXN2-1:1	chr22	 36851964	 36852557	-	lnc-TXN2-1	lnc-TXN2-1:1	XLOC_014364	linc-MYH9	NA	NA	NA	inter
CUST_32887_PI429285431	5.0732045	P	5.517705	P	0.73483869360916	0	lncRNA	34514-1_{1..1807}	n339554|AK090681|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1996|NULL|2.9914100|-0.2170609	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339554|AK090681|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1996|NULL|2.9914100|-0.2170609	chr20	  1927891	  1929697	+	NA	NA	NA	NA	PDYN	NA	chr20:1959402-1974931	inner
CUST_1224_PI429285431	1.7252747	A	2.652181	A	0.525985050112204	0	lncRNA	1216-1_{1..523}	"transcript_id ""ENST00000438824.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438824.1"" | genecode_v17"	chr2	208125169	208125691	+	ENSG00000225064.1	ENST00000438824.1	AC007879.6	AC007879.6-001	NA	NA	NA	inter
CUST_41733_PI429285431	0.92207134	A	0.9087913	A	1.00924751879504	0	lncRNA	43263-1_{1..109}	ENST00000390228 ncrna:miRNA chromosome:GRCh37:X:151561893:151562001:-1 gene:ENSG00000211583 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390228 ncrna:miRNA chromosome:GRCh37:X:151561893:151562001:-1 gene:ENSG00000211583 gene_biotype:miRNA transcript_biotype:miRNA	chrX	151561893	151562001	-	ENSG00000211583	ENST00000390228	NA	NA	GABRA3	NA	chrX:151551893-151572001	inner
CUST_22725_PI429285431	8.000177	P	8.261899	P	0.834091753581047	0	lncRNA	24309-1_{1..552}	lnc-AC007557.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC007557.1.1-3:1	chr2	217858681	217859232	+	lnc-AC007557.1.1-3	lnc-AC007557.1.1-3:1	ENSG00000236886.1	AC007563.5	NA	"hg19_refFlat_IGFBP5:range=chr2:217541474-2175594985'pad=0,hg19_refFlat_IGFBP5:range=chr2:217541474-2175594985'pad=0 3'pad=0 strand=- repeatMasking=none,-106.10"	NA	inter
CUST_37916_PI429285431	0.9229084	A	0.9111264	A	1.00820009821377	0	lncRNA	39005-1_{1..1136}	n346457|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2007|NULL|-1.3905300|-0.2687019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346457|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2007|NULL|-1.3905300|-0.2687019	chr12	 92950880	 92952015	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4834_PI429285431	1.5617927	A	0.90423006	A	1.57741540808028	0	lncRNA	4777-1_{1..554}	"transcript_id ""ENST00000554650.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554650.1"" | genecode_v17"	chr14	 55729485	 55730038	-	ENSG00000258413.1	ENST00000554650.1	RP11-665C16.6	RP11-665C16.6-001	FBXO34	NA	chr14:55738021-55748026	inner
CUST_38129_PI429285431	4.7016683	P	3.8239954	P	1.83740912681776	0	lncRNA	39202-1_{1..3000}	n381271|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gcd.2||-1.2947700|-0.3987245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381271|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gcd.2||-1.2947700|-0.3987245	chr1	162495161	162498160	+	NA	NA	NA	NA	UHMK1	NA	chr1:162485161-162499419	inner
CUST_6545_PI429285431	0.9095496	A	1.0635233	A	0.898771510860377	0	lncRNA	6493-1_{1..639}	"transcript_id ""ENST00000555406.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555406.2"" | genecode_v17"	chr19	 48366740	 48367378	-	ENSG00000259108.2	ENST00000555406.2	CTD-3098H1.2	CTD-3098H1.2-002	SULT2A1	NA	chr19:48373723-48377756	inter
CUST_46584_PI429285431	10.436415	P	10.956119	P	0.69751492872498	0	lncRNA	50768-1_{1..1721}	"gi|381342480|ref|NR_046480.1| Homo sapiens rogdi homolog (Drosophila) (ROGDI), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|381342480|ref|NR_046480.1| Homo sapiens rogdi homolog (Drosophila) (ROGDI), transcript variant 2, non-coding RNA"	Chr16	  4846963	  4848683	-	79641	NR_046480.1	NA	NA	NA	NA	NA	inter
CUST_28787_PI429285431	5.5789495	P	5.8781185	P	0.812720392818481	0	lncRNA	30495-1_{1..385}	n326194|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000095234|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000095234|-0.9103070|-0.0470448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326194|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000095234|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000095234|-0.9103070|-0.0470448	chr1	228077919	228078303	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35769_PI429285431	1.0950341	A	1.530079	A	0.73967073400549	0	lncRNA	37186-3_{6001..6821}	n344456|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_4|NULL|-1.5042800|-0.3122013	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344456|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_4|NULL|-1.5042800|-0.3122013	chr7	130571957	130572777	+	NA	NA	NA	NA	MKLN1	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50chr7:130794855-130803564"	NA	inter
CUST_15313_PI429285431	3.234908	A	3.7745261	P	0.687952995006611	0	lncRNA	16992-1_{1..638}	lnc-TNFAIP8L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFAIP8L1-1:1	chr19	  4585703	  4586340	+	lnc-TNFAIP8L1-1	lnc-TNFAIP8L1-1:1	XLOC_012922	linc-TNFAIP8L1-1	NA	NA	NA	inter
CUST_44447_PI429285431	0.91351783	A	0.90205526	A	1.00797689532052	0	lncRNA	49055-2_{3001..4491}	"gi|359279884|ref|NR_045579.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|359279884|ref|NR_045579.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 8, non-coding RNA"	Chr4	159445866	159447356	+	59350	NR_045579.1	NA	NA	NA	NA	NA	inter
CUST_24721_PI429285431	0.8939441	A	0.8918306	A	1.00146604015383	0	lncRNA	26267-1_{1..360}	lnc-SGIP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SGIP1-1:1	chr1	 67241197	 67241556	+	lnc-SGIP1-1	lnc-SGIP1-1:1	ENSG00000227787.1	RP11-266I14.3	TCTEX1D1	NA	chr1:67231197-67244730	inner
CUST_1927_PI429285431	3.3295176	P	4.0488462	P	0.607380038360475	0	lncRNA	1919-1_{1..403}	"transcript_id ""ENST00000504710.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504710.1"" | genecode_v17"	chr4	146520261	146520663	+	ENSG00000248686.1	ENST00000504710.1	RP11-557J10.5	RP11-557J10.5-001	NA	NA	NA	inter
CUST_51580_PI429285431	0.89505064	A	1.1383555	A	0.844807846796174	0	lncRNA	55145-1_{1..308}	hg19_lincRNAsTranscripts_TCONS_l2_00010614 range=chr17:20295882-20303914 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010614 range=chr17:20295882-20303914 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 20295882	 20296189	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10158_PI429285431	4.6118646	P	4.5018096	P	1.07926938080921	0	lncRNA	11683-1_{1..410}	lnc-AMELY-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AMELY-4:1	chrY	  6184086	  6184495	-	lnc-AMELY-4	lnc-AMELY-4:1	XLOC_008311	linc-SRY-5	NA	NA	NA	inter
CUST_39607_PI429285431	4.0515733	P	4.1388187	P	0.941318334257184	0	lncRNA	40549-1_{1..436}	n387650|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011krn.1||-1.1235000|-0.2632552	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387650|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011krn.1||-1.1235000|-0.2632552	chr7	141940629	141941064	+	NA	NA	NA	NA	PRSS58	NA	chr7:141951958-141953268	inter
CUST_51937_PI429285431	0.92336786	A	0.91409236	A	1.00644999890134	0	lncRNA	55478-1_{1..268}	hg19_lincRNAsTranscripts_TCONS_l2_00016479 range=chr20:11247025-11254049 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016479 range=chr20:11247025-11254049 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	 11247025	 11247292	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001286	0.92891026	A	1.6825472	A	0.593106488555798	0	lncRNA	TCONS_00000895	NA	NA	NA	NA	XLOC_000148	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000148), lincRNA [TCONS_00000895]"	chr1:38675933-38675992	hs|1p34.3	Agilent_HUMAN_G3V2	TCONS_00000895	TCONS_00000895	chr1	 38675933	 38675992	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24874_PI429285431	8.780264	P	9.381501	P	0.659188509577401	0	lncRNA	26415-1_{1..2626}	lnc-RPS25-1:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS25-1:18	chr11	118898338	118900963	-	lnc-RPS25-1	lnc-RPS25-1:18	ENSG00000137700.10	SLC37A4	SLC37A4	NA	chr11:118895061-118901616	inner
CUST_51440_PI429285431	5.3857746	P	5.103723	P	1.21592277157893	0	lncRNA	55017-1_{1..759}	hg19_lincRNAsTranscripts_TCONS_l2_00010079 range=chr16:29437125-29439957 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010079 range=chr16:29437125-29439957 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 29437125	 29437883	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45105_PI429285431	2.0100145	A	1.7102381	A	1.23095361587815	0	lncRNA	49586-2_{3001..3840}	"gi|406035361|ref|NR_073169.1| Homo sapiens autophagy related 9B (ATG9B), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|406035361|ref|NR_073169.1| Homo sapiens autophagy related 9B (ATG9B), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_073169.1	NA	NA	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507112575'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507112575'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.60"	NA	Unknown
CUST_6433_PI429285431	1.1034365	A	0.9170901	A	1.13787840671658	0	lncRNA	6373-1_{1..491}	"transcript_id ""ENST00000589821.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589821.1"" | genecode_v17"	chr19	 29493499	 29493989	+	ENSG00000267014.1	ENST00000589821.1	CTD-2081K17.2	CTD-2081K17.2-003	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70"	NA	inter
CUST_50903_PI429285431	11.538394	P	11.880472	P	0.78890418721581	0	lncRNA	54545-1_{1..692}	hg19_lincRNAsTranscripts_TCONS_l2_00005459 range=chr12:8332832-8346226 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005459 range=chr12:8332832-8346226 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	  8332832	  8333523	+	NA	NA	NA	NA	ZNF705A	NA	chr12:8325150-8332642	inter
CUST_27155_PI429285431	0.927045	A	0.91842616	A	1.00599200531773	0	lncRNA	28691-1_{1..333}	n324279|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043282|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043282|-0.8215990|-0.3535754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324279|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043282|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043282|-0.8215990|-0.3535754	chr6	170886763	170887095	+	NA	NA	NA	NA	PDCD2	"hg19_refFlat_PDCD2:range=chr6:170886647-1708936695'pad=0,hg19_refFlat_PDCD2:range=chr6:170886647-1708936695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chr6:170884660-170893780"	NA	inner
CUST_40014_PI429285431	12.549673	P	12.9025545	P	0.783018609151481	0	lncRNA	40875-1_{1..1888}	n407163|NR_026581|lncRNA|Homosapiens||RefGeneNoncode|NR_026581||3.8729800|-0.1473580	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407163|NR_026581|lncRNA|Homosapiens||RefGeneNoncode|NR_026581||3.8729800|-0.1473580	chr12	  6857157	  6859044	-	NA	NA	NA	NA	MLF2	NA	chr12:6857158-6862636	inter
CUST_48104_PI429285431	2.3153	A	2.4698925	A	0.898386092918037	0	lncRNA	51977-2_{3001..3473}	"gi|310115407|ref|XR_113100.1| PREDICTED: Homo sapiens uncharacterized LOC100131395 (LOC100131395), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310115407|ref|XR_113100.1| PREDICTED: Homo sapiens uncharacterized LOC100131395 (LOC100131395), misc_RNA"	NA	NA	NA	NA	NA	XR_113100.1	NA	NA	NA	NA	NA	Unknown
CUST_40362_PI429285431	2.2546802	A	2.828275	A	0.671940409719326	0	lncRNA	41161-2_{3001..3969}	n409104|NR_033233|lncRNA|Homosapiens||RefGeneNoncode|NR_033233||6.6464200|-0.1773382	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409104|NR_033233|lncRNA|Homosapiens||RefGeneNoncode|NR_033233||6.6464200|-0.1773382	chr6	 39875033	 39876001	-	NA	NA	NA	NA	DAAM2	NA	chr6:39862033-39872653	inner
CUST_45746_PI429285431	7.244707	P	7.6197176	P	0.771099747135631	0	lncRNA	50095-1_{1..1713}	"gi|372266094|ref|NR_045923.1| Homo sapiens post-GPI attachment to proteins 2 (PGAP2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372266094|ref|NR_045923.1| Homo sapiens post-GPI attachment to proteins 2 (PGAP2), transcript variant 3, non-coding RNA"	Chr11	  3819049	  3820761	+	27315	NR_045923.1	NA	NA	NA	NA	NA	inter
CUST_40430_PI429285431	1.2194419	A	0.9195314	A	1.23106803961096	0	lncRNA	41212-1_{1..640}	n409313|NR_033666|lncRNA|Homosapiens||RefGeneNoncode|NR_033666||-1.1640900|-0.3149444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409313|NR_033666|lncRNA|Homosapiens||RefGeneNoncode|NR_033666||-1.1640900|-0.3149444	chr11	 36616283	 36616922	-	NA	NA	NA	NA	C11orf74	NA	chr11:36616093-36629829	inner
LNCA_21_P0007462	0.9705701	A	1.225419	A	0.838074905460408	0	lncRNA	TCONS_00020069	NA	NA	NA	NA	XLOC_009448	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009448), lincRNA [TCONS_00020069]"	chr11:61215961-61215902	hs|11q12.2	Agilent_HUMAN_G3V2	TCONS_00020069	TCONS_00020069	chr11	 61215902	 61215961	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49994_PI429285431	6.7492266	P	6.991693	P	0.845298971698869	0	lncRNA	53731-1_{1..281}	hg19_lincRNAsTranscripts_TCONS_l2_00027747 range=chr8:49277962-49337122 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027747 range=chr8:49277962-49337122 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 49277962	 49278242	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005493	4.058455	P	4.699024	P	0.641459906619192	0	lncRNA	TCONS_00013784	NA	NA	NA	NA	XLOC_006419	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006419), lincRNA [TCONS_00013784]"	chr7:42368511-42368452	hs|7p14.1	Agilent_HUMAN_G3V2	TCONS_00013784	TCONS_00013784	chr7	 42368452	 42368511	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38291_PI429285431	1.2671385	A	1.5984619	A	0.794807064007891	0	lncRNA	39344-1_{1..2054}	n381941|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tya.2||2.4245100|-0.2171557	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381941|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tya.2||2.4245100|-0.2171557	chr12	120655866	120657919	-	NA	NA	NA	NA	PXN	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40chr12:120648250-120667920"	NA	inner
CUST_36443_PI429285431	4.738613	P	5.2475863	P	0.70272235528653	0	lncRNA	37657-1_{1..1177}	n344957|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_506|NULL|-1.3253900|-0.3471333	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344957|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_506|NULL|-1.3253900|-0.3471333	chr7	 66172840	 66174016	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_14169_PI429285431	1.0158356	A	1.2457373	A	0.852692989191834	0	lncRNA	15821-1_{1..3000}	lnc-KCND3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCND3-1:1	chr1	112686221	112689220	-	lnc-KCND3-1	lnc-KCND3-1:1	XLOC_000964	linc-KCND3-2	NA	NA	NA	inter
CUST_51439_PI429285431	0.9269159	A	0.8993474	A	1.01929277406015	0	lncRNA	55016-1_{1..847}	hg19_lincRNAsTranscripts_TCONS_l2_00009650 range=chr16:28270021-28301674 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009650 range=chr16:28270021-28301674 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 28270021	 28270867	+	NA	NA	NA	NA	SBK1	NA	chr16:28303840-28311674	inter
CUST_30797_PI429285431	5.208995	P	5.214491	P	0.996197710175762	0	lncRNA	32584-1_{1..274}	n336686|Z70024|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327863|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327863|-1.0544400|-0.1728783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336686|Z70024|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327863|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327863|-1.0544400|-0.1728783	chr1	 41157347	 41157620	+	NA	NA	NA	NA	NFYC	NA	chr1:41157242-41214590	inter
CUST_19880_PI429285431	1.3756571	A	1.1472278	A	1.1715587478477	0	lncRNA	21536-1_{1..625}	lnc-DLEU7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-DLEU7-1:1	chr13	 51484619	 51485243	-	lnc-DLEU7-1	lnc-DLEU7-1:1	ENSG00000233672.1	RNASEH2B-AS1	RNASEH2B	NA	chr13:51483814-51494848	inner
LNCA_21_P0013374	1.0107126	A	0.9871682	A	1.0164536287259	0	lncRNA	ENST00000453564	NA	NA	NA	NA	XLOC_l2_013302	NA	ENST00000453564	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013302), lincRNA [TCONS_l2_00027067]"	chr7:20340169-20340228	hs|7p21.1	Agilent_HUMAN_G3V2	ENST00000453564	ENST00000453564	chr7	 20340169	 20340228	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22981_PI429285431	1.3687947	A	1.2589144	A	1.0791386969571	0	lncRNA	24555-1_{1..541}	lnc-RHOB-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RHOB-3:1	chr2	 20203781	 20204321	+	lnc-RHOB-3	lnc-RHOB-3:1	ENSG00000227210.1	AC079145.4	MATN3	NA	chr2:20193781-20212455	inner
CUST_20573_PI429285431	3.2167938	P	3.2329397	P	0.988870906637516	0	lncRNA	22214-1_{1..665}	lnc-AMFR-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AMFR-4:4	chr16	 56221953	 56222617	-	lnc-AMFR-4	lnc-AMFR-4:4	ENSG00000246379.2	RP11-461O7.1	GNAO1	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40chr16:56225251-56231990"	NA	inter
CUST_12387_PI429285431	0.93688816	A	0.925831	A	1.00769368473848	0	lncRNA	14000-1_{1..267}	lnc-ZC3H12B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZC3H12B-1:1	chrX	 64588709	 64588975	+	lnc-ZC3H12B-1	lnc-ZC3H12B-1:1	XLOC_008001	linc-ZC3H12B-1	NA	NA	NA	inter
LNCA_21_P0007585	1.6535344	A	1.0042144	A	1.56842875820318	0	lncRNA	ENST00000550380	NA	NA	NA	NA	XLOC_009810	NA	ENST00000550380	NA	NA	"BROAD Institute lincRNA (XLOC_009810), lincRNA [TCONS_00020477]"	chr12:76653714-76685907	hs|12q21.2	Agilent_HUMAN_G3V2	ENST00000550380	ENST00000550380	chr12	 76653714	 76685907	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48374_PI429285431	4.310173	P	4.3874693	P	0.947832279808332	0	lncRNA	52227-1_{1..354}	hg19_lincRNAsTranscripts_TCONS_l2_00001393 range=chr1:95171104-95198157 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001393 range=chr1:95171104-95198157 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 95171104	 95171457	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5404_PI429285431	1.109132	A	1.262193	A	0.899340285457659	0	lncRNA	5338-1_{1..572}	"transcript_id ""ENST00000565111.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565111.1"" | genecode_v17"	chr16	  2694085	  2694656	-	ENSG00000260176.1	ENST00000565111.1	CTD-3126B10.4	CTD-3126B10.4-001	NA	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40"	NA	inter
CUST_40863_PI429285431	0.92066324	A	1.1224245	A	0.869488432833747	0	lncRNA	41562-1_{1..1801}	n410656|NR_037898|lncRNA|Homosapiens||RefGeneNoncode|NR_037898||-0.3397090|-0.2292930	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410656|NR_037898|lncRNA|Homosapiens||RefGeneNoncode|NR_037898||-0.3397090|-0.2292930	chr5	131646968	131648768	-	NA	NA	NA	NA	SLC22A5	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SLC22A4:range=chr5:131630310-1316795285'pad=0,hg19_refFlat_SLC22A4:range=chr5:131630310-1316795285'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00chr5:131705401-131715608"	NA	inner
CUST_22261_PI429285431	0.9167864	A	1.2809645	A	0.776911353535698	0	lncRNA	23862-1_{1..679}	lnc-GSG1L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GSG1L-1:2	chr16	 27730034	 27730712	-	lnc-GSG1L-1	lnc-GSG1L-1:2	ENSG00000261329.1	CTD-2049O4.1	KIAA0556	"hg19_refFlat_KIAA0556:range=chr16:27561492-277899505'pad=0,hg19_refFlat_KIAA0556:range=chr16:27561492-277899505'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10chr16:27720034-27740097"	NA	inner
CUST_37808_PI429285431	3.878826	P	4.47297	P	0.662437385231425	0	lncRNA	38901-1_{1..3000}	n346323|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1873|NULL|-1.2968200|-0.1783892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346323|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1873|NULL|-1.2968200|-0.1783892	chr11	  3430942	  3433941	+	NA	NA	NA	NA	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0,hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0,hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0,hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0 3'pad=0 strand=- repeatMasking=none,-101.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0,hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10"	NA	inter
CUST_13813_PI429285431	1.0968738	A	0.9263677	A	1.12545322645094	0	lncRNA	15456-1_{1..218}	lnc-FOXD4L6-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXD4L6-1:13	chr9	 69177532	 69177749	-	lnc-FOXD4L6-1	lnc-FOXD4L6-1:13	XLOC_007714	linc-FAM75A7-8	NA	NA	NA	inter
CUST_835_PI429285431	0.9216453	A	0.91746867	A	1.002899213924	0	lncRNA	829-1_{1..768}	"transcript_id ""ENST00000588650.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588650.1"" | genecode_v17"	chr2	 35056445	 35057212	+	ENSG00000226994.2	ENST00000588650.1	AC012593.1	AC012593.1-007	NA	NA	NA	inter
CUST_42778_PI429285431	7.403109	P	7.502698	P	0.933298835098274	0	lncRNA	45763-1_{1..131}	ENST00000384275 ncrna:snoRNA chromosome:GRCh37:3:123532924:123533054:1 gene:ENSG00000207002 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384275 ncrna:snoRNA chromosome:GRCh37:3:123532924:123533054:1 gene:ENSG00000207002 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	123532924	123533054	+	ENSG00000207002	ENST00000384275	NA	NA	MYLK	NA	chr3:123522924-123543054	inner
CUST_40777_PI429285431	4.0394835	P	3.2488475	P	1.72983687862017	0	lncRNA	41494-1_{1..3000}	n410507|NR_037649|lncRNA|Homosapiens||RefGeneNoncode|NR_037649||6.5885300|-0.3371776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410507|NR_037649|lncRNA|Homosapiens||RefGeneNoncode|NR_037649||6.5885300|-0.3371776	chr2	135676391	135679390	+	NA	NA	NA	NA	YSK4	NA	chr2:135722273-135726915	inter
CUST_6346_PI429285431	1.0174365	A	1.0700186	A	0.964209066075529	0	lncRNA	6270-1_{1..277}	"transcript_id ""ENST00000593588.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593588.1"" | genecode_v17"	chr19	 15331826	 15332102	-	ENSG00000269635.1	ENST00000593588.1	AC004257.1	AC004257.1-001	EPHX3	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50chr19:15337730-15343108"	NA	inter
CUST_38753_PI429285431	3.989604	P	3.8762946	P	1.08170672114959	0	lncRNA	39744-1_{1..2282}	n384319|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003emb.2||1.0124300|-0.2577402	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384319|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003emb.2||1.0124300|-0.2577402	chr3	129101677	129103958	-	NA	NA	NA	NA	C3orf25	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90chr3:129120164-129128282"	NA	inter
CUST_24638_PI429285431	7.067701	P	7.1441116	P	0.948414352090249	0	lncRNA	26187-1_{1..272}	lnc-RP11-392O18.1.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-392O18.1.1-1:3	chr3	150437656	150437927	+	lnc-RP11-392O18.1.1-1	lnc-RP11-392O18.1.1-1:3	ENSG00000240137.1	RP11-103G8.2	NA	NA	NA	inter
CUST_35473_PI429285431	0.9168171	A	0.9442613	A	0.981156923071888	0	lncRNA	36882-1_{1..1574}	n342570|AL832995|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5069|NULL|0.1690670|-0.3857516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342570|AL832995|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5069|NULL|0.1690670|-0.3857516	chr18	 18526868	 18528441	-	NA	NA	NA	NA	ROCK1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50chr18:18529701-18538428"	NA	inter
CUST_6760_PI429285431	0.9672204	A	1.2060918	A	0.847407968447501	0	lncRNA	6708-1_{1..717}	"transcript_id ""ENST00000418954.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418954.1"" | genecode_v17"	chr21	 16225292	 16226008	-	ENSG00000235609.3	ENST00000418954.1	AF127936.7	AF127936.7-003	NA	NA	NA	inter
CUST_3001_PI429285431	0.944713	A	0.9283147	A	1.01143127878441	0	lncRNA	2980-1_{1..563}	"transcript_id ""ENST00000521143.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521143.1"" | genecode_v17"	chr8	  9208748	  9209310	-	ENSG00000253735.1	ENST00000521143.1	RP11-115J16.3	RP11-115J16.3-001	NA	NA	NA	inter
CUST_12962_PI429285431	0.99013126	A	0.99843323	A	0.994262038248796	0	lncRNA	14589-1_{1..488}	lnc-FAM120B-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM120B-5:1	chr6	170465927	170466414	+	lnc-FAM120B-5	lnc-FAM120B-5:1	XLOC_005561	linc-FAM120B-4	NA	NA	NA	inter
CUST_48594_PI429285431	1.5145103	A	1.2856722	A	1.17189076609401	0	lncRNA	52441-1_{1..622}	hg19_lincRNAsTranscripts_TCONS_l2_00013559 range=chr2:33875676-33881288 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013559 range=chr2:33875676-33881288 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 33875676	 33876297	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46279_PI429285431	1.0895002	A	1.1062574	A	0.988451990153275	0	lncRNA	50516-2_{3001..5439}	"gi|337298457|ref|NR_038970.1| Homo sapiens long intergenic non-protein coding RNA 641 (LINC00641), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|337298457|ref|NR_038970.1| Homo sapiens long intergenic non-protein coding RNA 641 (LINC00641), transcript variant 1, non-coding RNA"	Chr14	 21671238	 21673676	-	283624	NR_038970.1	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30"	NA	inter
CUST_2974_PI429285431	0.91551065	A	0.91955864	A	0.997198079870612	0	lncRNA	2953-1_{1..559}	"transcript_id ""ENST00000520162.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520162.1"" | genecode_v17"	chr8	  2376124	  2376682	+	ENSG00000253855.1	ENST00000520162.1	AC133633.1	AC133633.1-001	NA	NA	NA	inter
CUST_47063_PI429285431	8.036363	P	8.397649	P	0.778470351728623	0	lncRNA	51150-1_{1..1651}	"gi|334278911|ref|NR_038336.1| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|334278911|ref|NR_038336.1| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), transcript variant 2, non-coding RNA"	Chr19	 14519610	 14521260	-	10212	NR_038336.1	NA	NA	NA	NA	NA	inter
CUST_10865_PI429285431	0.9273616	A	1.1866977	A	0.835472298967353	0	lncRNA	12403-1_{1..434}	lnc-AACS-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AACS-3:1	chr12	125774558	125774991	+	lnc-AACS-3	lnc-AACS-3:1	XLOC_009933	linc-TMEM132B-1	NA	NA	NA	inter
CUST_45078_PI429285431	0.90999496	A	0.9045305	A	1.00379485734861	0	lncRNA	49561-1_{1..2046}	"gi|310120094|ref|XR_108815.1| PREDICTED: Homo sapiens uncharacterized LOC100506881, transcript variant 1 (LOC100506881), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310120094|ref|XR_108815.1| PREDICTED: Homo sapiens uncharacterized LOC100506881, transcript variant 1 (LOC100506881), misc_RNA"	Chr7	130994503	130996548	-	100506881	XR_108815.1	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50"	NA	inter
LNCA_21_P0003166	4.446956	P	4.6652575	P	0.859576829774314	0	lncRNA	TCONS_00006636	NA	NA	NA	NA	XLOC_003235	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003235), lincRNA [TCONS_00006636]"	chr3:126012550-126012491	hs|3q21.3	Agilent_HUMAN_G3V2	TCONS_00006636	TCONS_00006636	chr3	126012491	126012550	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43361_PI429285431	15.005941	P	14.902857	P	1.07406700666704	0	lncRNA	48178-2_{3001..3133}	"gi|282394039|ref|NR_033183.1| Homo sapiens mindbomb E3 ubiquitin protein ligase 2 (MIB2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|282394039|ref|NR_033183.1| Homo sapiens mindbomb E3 ubiquitin protein ligase 2 (MIB2), transcript variant 6, non-coding RNA"	Chr1	  1553795	  1553927	+	142678	NR_033183.1	NA	NA	NA	NA	NA	inter
CUST_10797_PI429285431	0.9162739	A	0.9130741	A	1.00222039377973	0	lncRNA	12334-1_{1..471}	lnc-AC092329.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092329.1-2:3	chr19	 23493350	 23493820	-	lnc-AC092329.1-2	lnc-AC092329.1-2:3	XLOC_013275	linc-ZNF99-5	NA	NA	NA	inter
CUST_31183_PI429285431	0.9102959	A	0.9050294	A	1.00365713066915	0	lncRNA	32978-1_{1..1200}	n337623|BC038195|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2|NULL|-1.1455000|-0.3277622	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337623|BC038195|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2|NULL|-1.1455000|-0.3277622	chrX	  4545240	  4546439	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4972_PI429285431	0.92671967	A	0.977533	A	0.965391928644258	0	lncRNA	4916-1_{1..750}	"transcript_id ""ENST00000557211.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557211.1"" | genecode_v17"	chr14	 97576753	 97577502	-	ENSG00000259026.1	ENST00000557211.1	RP11-907D1.1	RP11-907D1.1-001	NA	NA	NA	inter
CUST_24864_PI429285431	2.2858121	A	1.0570699	A	2.34362573961078	0	lncRNA	26405-1_{1..323}	lnc-RPP38-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPP38-1:1	chr10	 15181758	 15182080	+	lnc-RPP38-1	lnc-RPP38-1:1	ENSG00000241107.1	RP11-455B2.7	NMT2	NA	chr10:15171758-15191817	inner
CUST_5051_PI429285431	12.051356	P	11.698778	P	1.27684021844688	0	lncRNA	4991-1_{1..579}	"transcript_id ""ENST00000553729.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553729.1"" | genecode_v17"	chr14	102025925	102026503	-	ENSG00000258498.1	ENST00000553729.1	DIO3OS	DIO3OS-014	DIO3	NA	chr14:102027688-102029789	inter
CUST_3_PI429201921	5.0523868	P	4.93664	P	1.08353578435353	0	lncRNA	3-1_{1..380}	TC06003710.hg.1	TCONS_l2_00024815-XLOC_l2_013033 // Broad TUCP // linc-COL9A1-2 chr6:-:71318499-71318880 // chr6 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6:-:71318499-71318880	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00024815-XLOC_l2_013033	linc-COL9A1-2	chr6	 71318499	 71318880	-	NA	NA	NA	NA	EN1	NA	chr2:119599747-119602686	Unknown
CUST_115_PI429285431	1.1400852	A	1.1788762	A	0.973470388419096	0	lncRNA	106-1_{1..566}	"transcript_id ""ENST00000457084.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457084.1"" | genecode_v17"	chr1	   714162	   714727	+	ENSG00000237491.3	ENST00000457084.1	RP11-206L10.9	RP11-206L10.9-019	NA	NA	NA	inter
CUST_558_PI429285431	0.90867	A	0.9012513	A	1.00515549505274	0	lncRNA	550-1_{1..491}	"transcript_id ""ENST00000417794.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417794.1"" | genecode_v17"	chr1	211665597	211666087	+	ENSG00000223649.1	ENST00000417794.1	RP11-359E8.3	RP11-359E8.3-001	RD3	NA	chr1:211655597-211666259	inner
CUST_26848_PI429285431	1.373753	A	0.9290319	A	1.36105097439391	0	lncRNA	28362-1_{1..2118}	n323920|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000144380|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000144380|-0.0366248|-0.3743936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323920|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000144380|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000144380|-0.0366248|-0.3743936	chrX	  3857909	  3860026	-	NA	NA	NA	NA	LOC729162	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40chrX:3847909-3849743"	NA	inter
LNCA_21_P0008922	3.2934358	P	4.0509276	P	0.591523832072126	0	lncRNA	TCONS_00024370	NA	NA	NA	NA	XLOC_011694	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011694), lincRNA [TCONS_00024370]"	chr16:32626855-32626914	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_00024370	TCONS_00024370	chr16	 32626855	 32626914	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43544_PI429285431	1.1279147	A	1.5085752	A	0.768085862214185	0	lncRNA	48323-3_{6001..6914}	"gi|388490241|ref|NR_049774.1| Homo sapiens KIAA1324 (KIAA1324), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388490241|ref|NR_049774.1| Homo sapiens KIAA1324 (KIAA1324), transcript variant 5, non-coding RNA"	Chr1	109735171	109736084	+	57535	NR_049774.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60"	NA	inter
CUST_22123_PI429285431	2.1920428	A	1.5562108	A	1.55383358509054	0	lncRNA	23726-1_{1..544}	lnc-ANKAR-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKAR-1:2	chr2	190629581	190630124	+	lnc-ANKAR-1	lnc-ANKAR-1:2	ENSG00000253559.1	OSGEPL1-AS1	OSGEPL1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00chr2:190619581-190627924"	NA	inter
CUST_36544_PI429285431	6.2792745	P	6.188396	P	1.06501850654558	0	lncRNA	37740-1_{1..462}	n345042|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_591|NULL|-1.5220500|-0.4164655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345042|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_591|NULL|-1.5220500|-0.4164655	chr9	  5578474	  5578935	+	NA	NA	NA	NA	PDCD1LG2	NA	chr9:5568474-5571282	inter
CUST_19331_PI429285431	0.91971636	A	0.9564069	A	0.974888723389791	0	lncRNA	20997-1_{1..813}	lnc-NDUFB4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFB4-1:1	chr3	120086648	120087460	+	lnc-NDUFB4-1	lnc-NDUFB4-1:1	ENSG00000240661.1	RP11-174O3.3	NA	NA	NA	inter
CUST_50000_PI429285431	1.8943197	A	1.9754311	A	0.94532911883588	0	lncRNA	53737-1_{1..408}	hg19_lincRNAsTranscripts_TCONS_l2_00027551 range=chr8:846693-982857 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027551 range=chr8:846693-982857 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	   846693	   847100	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35656_PI429285431	8.687252	P	8.496369	P	1.14146213282571	0	lncRNA	37077-1_{1..563}	n342813|BC018166|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5316|NULL|0.4629440|-0.1693397	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342813|BC018166|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5316|NULL|0.4629440|-0.1693397	chr7	 72693842	 72694404	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006932	0.9745482	A	0.9205613	A	1.03812984404451	0	lncRNA	TCONS_00018379	NA	NA	NA	NA	XLOC_008658	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008658), lincRNA [TCONS_00018379]"	chr10:126575121-126575180	hs|10q26.13	Agilent_HUMAN_G3V2	TCONS_00018379	TCONS_00018379	chr10	126575121	126575180	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28089_PI429285431	1.9143118	A	2.1845212	A	0.829199182947949	0	lncRNA	29710-1_{1..849}	n325360|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324542|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324542|0.3676880|-0.3306103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325360|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324542|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324542|0.3676880|-0.3306103	chr2	 28524537	 28525385	-	NA	NA	NA	NA	BRE	NA	chr2:28514537-28536555	inner
CUST_37308_PI429285431	2.9281347	A	2.8055263	A	1.08870146198134	0	lncRNA	38415-1_{1..2834}	n345751|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1300|NULL|-1.3358800|-0.2080633	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n345751|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1300|NULL|-1.3358800|-0.2080633	chr10	102133347	102136180	+	NA	NA	NA	NA	SCD	NA	chr10:102123347-102124588	inter
CUST_45551_PI429285431	1.2580168	A	1.6212635	A	0.777413087336992	0	lncRNA	49951-1_{1..1279}	"gi|410170593|ref|XR_132569.3| PREDICTED: Homo sapiens putative UPF0607 protein FLJ37424-like (LOC100505502), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170593|ref|XR_132569.3| PREDICTED: Homo sapiens putative UPF0607 protein FLJ37424-like (LOC100505502), misc_RNA"	Chr10	 31651728	 31653006	-	100505502	XR_132569.3	NA	NA	NA	NA	NA	inter
CUST_13066_PI429285431	5.4271936	P	5.4836974	P	0.961591600980205	0	lncRNA	14693-1_{1..229}	lnc-EIF3A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF3A-2:1	chr10	120763307	120763535	-	lnc-EIF3A-2	lnc-EIF3A-2:1	XLOC_008966	linc-C10orf46	NA	NA	NA	inter
CUST_37754_PI429285431	5.6436543	P	5.9396677	P	0.814499997818829	0	lncRNA	38850-1_{1..2712}	n346261|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1811|NULL|-1.3147100|-0.2170152	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n346261|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1811|NULL|-1.3147100|-0.2170152	chr3	110609923	110612634	-	NA	NA	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70"	NA	inter
CUST_51425_PI429285431	6.56429	P	6.680586	P	0.922553191552343	0	lncRNA	55004-1_{1..297}	hg19_lincRNAsTranscripts_TCONS_l2_00010019 range=chr16:14823517-14827301 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010019 range=chr16:14823517-14827301 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 14823517	 14823813	-	NA	NA	NA	NA	LOC642778	NA	chr16:14813517-14820150	inter
CUST_7643_PI429285431	4.981365	P	5.213512	P	0.851366955306413	0	lncRNA	9275-1_{1..511}	lnc-TMEM132D-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM132D-3:1	chr12	130646507	130647017	-	lnc-TMEM132D-3	lnc-TMEM132D-3:1	ENSG00000250208	RP11-143E21.7	FZD10	NA	chr12:130647004-130650285	inter
CUST_29816_PI429285431	0.9194391	A	0.90273124	A	1.01164832552754	0	lncRNA	31579-1_{1..226}	n333534|BC046515|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000098379|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000098379|-1.1115200|-0.2138885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333534|BC046515|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000098379|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000098379|-1.1115200|-0.2138885	chr7	 27235768	 27235993	-	NA	NA	NA	NA	HOXA13	NA	chr7:27236499-27239725	inter
CUST_21706_PI429285431	5.7035537	P	6.06679	P	0.777418691518764	0	lncRNA	23317-1_{1..1149}	lnc-ANKRD11-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD11-6:2	chr16	 89266121	 89267269	-	lnc-ANKRD11-6	lnc-ANKRD11-6:2	ENSG00000259803.1	RP11-46C24.8	CDH15	NA	chr16:89256121-89261900	inner
CUST_3700_PI429285431	1.1406591	A	1.7793207	A	0.64230854736552	0	lncRNA	3668-1_{1..520}	"transcript_id ""ENST00000594536.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594536.1"" | genecode_v17"	chr10	 61496753	 61497272	-	ENSG00000227877.2	ENST00000594536.1	RP11-59J5.1	RP11-59J5.1-003	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
CUST_35779_PI429285431	2.068159	A	2.153368	A	0.942647966726139	0	lncRNA	37193-1_{1..738}	n344463|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_11|NULL|-1.3154200|-0.3485241	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344463|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_11|NULL|-1.3154200|-0.3485241	chr17	 43651603	 43652340	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29366_PI429285431	3.973131	P	4.139909	P	0.890829969794984	0	lncRNA	31118-1_{1..266}	n332627|AB009454|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000058183|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000058183|1.5185500|-0.1084558	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332627|AB009454|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000058183|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000058183|1.5185500|-0.1084558	chr11	118827577	118827842	+	NA	NA	NA	NA	UPK2	NA	chr11:118827008-118829269	inner
CUST_19898_PI429285431	0.9196992	A	0.91472995	A	1.00345036046383	0	lncRNA	21553-1_{1..2595}	lnc-PTPLA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-PTPLA-1:1	chr10	 17683283	 17685877	-	lnc-PTPLA-1	lnc-PTPLA-1:1	ENSG00000260589.1	RP11-390B4.5	STAM	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20chr10:17686124-17695877"	NA	inter
CUST_15038_PI429285431	0.91559637	A	0.9150668	A	1.00036713733083	0	lncRNA	16701-1_{1..449}	lnc-GMPS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GMPS-1:1	chr3	155580439	155580887	+	lnc-GMPS-1	lnc-GMPS-1:1	XLOC_002888	linc-GMPS-1	GMPS	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30chr3:155588325-155590750"	NA	inter
LNCA_21_P0005378	9.310205	P	9.3002	P	1.00695903990477	0	lncRNA	BC042120	NA	BC042120	NA	Hs.616647	XLOC_006091	NA	NA	THC2687549	NA	"BROAD Institute lincRNA (XLOC_006091), lincRNA [TCONS_00013442]"	chr7:48748410-48748469	hs|7p12.3	Agilent_HUMAN_G3V2	BC042120	BC042120	chr7	 48748410	 48748469	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24654_PI429285431	0.9226342	A	0.90612364	A	1.01150998404769	0	lncRNA	26203-1_{1..386}	lnc-SSTR4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SSTR4-1:2	chr20	 23019571	 23019956	+	lnc-SSTR4-1	lnc-SSTR4-1:2	ENSG00000234646.1	RP4-753D10.3	SSTR4	NA	chr20:23009571-23017314	inter
CUST_24819_PI429285431	8.347447	P	8.144325	P	1.15118683612476	0	lncRNA	26359-1_{1..458}	lnc-TMEM178-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM178-1:10	chr2	 39892227	 39892684	+	lnc-TMEM178-1	lnc-TMEM178-1:10	ENSG00000231312.2	AC007246.3	TMEM178	NA	chr2:39892638-39902483	inter
LNCA_21_P0013681	0.92861193	A	0.9125221	A	1.01121504261158	0	lncRNA	TCONS_l2_00029540	NA	NA	NA	NA	XLOC_l2_015322	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015322), lincRNA [TCONS_l2_00029540]"	chr9:106082252-106082193	hs|9q31.1	Agilent_HUMAN_G3V2	TCONS_l2_00029540	TCONS_l2_00029540	chr9	106082193	106082252	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41440_PI429285431	0.911759	A	0.9175199	A	0.996014810435945	0	lncRNA	42611-1_{1..76}	ENST00000579472 ncrna:miRNA chromosome:GRCh37:13:88270920:88270995:-1 gene:ENSG00000266052 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579472 ncrna:miRNA chromosome:GRCh37:13:88270920:88270995:-1 gene:ENSG00000266052 gene_biotype:miRNA transcript_biotype:miRNA	chr13	 88270920	 88270995	-	ENSG00000266052	ENST00000579472	NA	NA	NA	NA	NA	inter
CUST_8371_PI429285431	5.3514156	P	5.0661397	P	1.21864329389136	0	lncRNA	9949-1_{1..902}	lnc-TMEM60-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM60-1:5	chr7	 77325213	 77326114	-	lnc-TMEM60-1	lnc-TMEM60-1:5	ENSG00000214293	AC090421.1	RSBN1L	NA	chr7:77325743-77335570	inter
CUST_46280_PI429285431	7.593679	P	6.9530067	P	1.55905551437831	0	lncRNA	50517-1_{1..2912}	"gi|254281337|ref|NR_028074.1| Homo sapiens RAB2B, member RAS oncogene family (RAB2B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254281337|ref|NR_028074.1| Homo sapiens RAB2B, member RAS oncogene family (RAB2B), transcript variant 3, non-coding RNA"	Chr14	 21927179	 21930090	-	84932	NR_028074.1	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
CUST_41678_PI429285431	0.9151732	A	0.9173851	A	0.998468002459472	0	lncRNA	43130-1_{1..73}	ENST00000516410 ncrna:miRNA chromosome:GRCh37:X:145074271:145074343:-1 gene:ENSG00000252219 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516410 ncrna:miRNA chromosome:GRCh37:X:145074271:145074343:-1 gene:ENSG00000252219 gene_biotype:miRNA transcript_biotype:miRNA	chrX	145074271	145074343	-	ENSG00000252219	ENST00000516410	NA	NA	NA	NA	NA	inter
CUST_37951_PI429285431	3.2193055	P	4.152157	P	0.523821979005616	0	lncRNA	39041-1_{1..396}	n346498|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2048|NULL|-1.3211400|-0.6215262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346498|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2048|NULL|-1.3211400|-0.6215262	chr3	197362562	197362957	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPP4R2:range=chr3:73046189-731148735'pad=0,hg19_refFlat_PPP4R2:range=chr3:73046189-731148735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	inter
CUST_21592_PI429285431	6.2782516	P	6.665732	P	0.764463539441598	0	lncRNA	23205-1_{1..2349}	lnc-GPS2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPS2-1:2	chr17	  7222369	  7224717	-	lnc-GPS2-1	lnc-GPS2-1:2	ENSG00000261915.1	RP11-542C16.2	NEURL4	NA	chr17:7218951-7232394	inner
CUST_45041_PI429285431	5.419732	P	4.781568	P	1.55634726260105	0	lncRNA	49538-1_{1..3000}	"gi|240255595|ref|NR_027830.1| Homo sapiens B-cell receptor-associated protein 29 (BCAP29), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|240255595|ref|NR_027830.1| Homo sapiens B-cell receptor-associated protein 29 (BCAP29), transcript variant 3, non-coding RNA"	Chr7	107220422	107223421	+	55973	NR_027830.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008918	3.5930197	P	3.5349932	P	1.04104071976114	0	lncRNA	TCONS_00024357	NA	NA	NA	NA	XLOC_011680	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011680), lincRNA [TCONS_00024357]"	chr16:27293008-27293067	hs|16p12.1	Agilent_HUMAN_G3V2	TCONS_00024357	TCONS_00024357	chr16	 27293008	 27293067	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44827_PI429285431	2.3020475	A	1.1798261	A	2.17681891840532	0	lncRNA	49358-1_{1..3000}	"gi|395394050|ref|NR_073033.1| Homo sapiens LATS, large tumor suppressor, homolog 1 (Drosophila) (LATS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|395394050|ref|NR_073033.1| Homo sapiens LATS, large tumor suppressor, homolog 1 (Drosophila) (LATS1), transcript variant 3, non-coding RNA"	Chr6	149979289	149982288	-	9113	NR_073033.1	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_5264_PI429285431	4.1809545	P	3.9331331	P	1.18741265993391	0	lncRNA	5204-1_{1..2455}	"transcript_id ""ENST00000563737.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563737.1"" | genecode_v17"	chr15	 81283145	 81285599	-	ENSG00000260619.1	ENST00000563737.1	RP11-775C24.3	RP11-775C24.3-001	MESDC2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20chr15:81273145-81282205"	NA	inter
CUST_22837_PI429285431	2.9134912	P	2.900752	A	1.00886924125724	0	lncRNA	24416-1_{1..575}	lnc-C1orf177-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf177-2:1	chr1	 55353361	 55353935	+	lnc-C1orf177-2	lnc-C1orf177-2:1	ENSG00000242396.1	RP11-67L3.5	DHCR24	"hg19_refFlat_DHCR24:range=chr1:55317906-553527925'pad=0,hg19_refFlat_DHCR24:range=chr1:55317906-553527925'pad=0 3'pad=0 strand=- repeatMasking=none,-99.20chr1:55343361-55352921"	NA	inter
CUST_31766_PI429285431	0.9441916	A	0.9146366	A	1.02069724257669	0	lncRNA	33506-1_{1..2297}	n338306|AK095070|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|700|NULL|-0.2486040|-0.3752661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338306|AK095070|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|700|NULL|-0.2486040|-0.3752661	chr14	 50795860	 50798156	+	NA	NA	NA	NA	CDKL1	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_CDKL1:range=chr14:50796792-508625895'pad=0,hg19_refFlat_CDKL1:range=chr14:50796792-508625895'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90chr14:50796720-50808158"	NA	inner
CUST_2781_PI429285431	0.909366	A	0.9098903	A	0.999636648961216	0	lncRNA	2765-1_{1..499}	"transcript_id ""ENST00000412828.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412828.1"" | genecode_v17"	chr7	 23931323	 23931821	-	ENSG00000227930.1	ENST00000412828.1	AC009508.1	AC009508.1-001	NA	NA	NA	inter
LNCA_21_P0008366	0.9244752	A	1.3466561	A	0.746295607532581	0	lncRNA	TCONS_00022580	NA	NA	NA	NA	XLOC_010893	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010893), lincRNA [TCONS_00022580]"	chr14:86823887-86823946	hs|14q31.3	Agilent_HUMAN_G3V2	TCONS_00022580	TCONS_00022580	chr14	 86823887	 86823946	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9828_PI429285431	0.9296059	A	0.92942613	A	1.00012461483243	0	lncRNA	11349-1_{1..309}	lnc-HNF4G-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HNF4G-1:1	chr8	 76863748	 76864056	+	lnc-HNF4G-1	lnc-HNF4G-1:1	XLOC_006849	linc-ZFHX4-2	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_13656_PI429285431	7.0946755	P	7.2769136	P	0.881334691885978	0	lncRNA	15295-1_{1..1275}	lnc-ZNF644-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF644-1:7	chr1	 91301383	 91302657	-	lnc-ZNF644-1	lnc-ZNF644-1:7	XLOC_000915	linc-BARHL2	NA	"hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80"	NA	inter
CUST_28607_PI429285431	0.9264968	A	1.194483	A	0.830477967932676	0	lncRNA	30291-1_{1..709}	n325972|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047899|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047899|-1.3666900|-0.4013640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325972|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047899|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047899|-1.3666900|-0.4013640	chr10	 48608126	 48608834	-	NA	NA	NA	NA	NA	"hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-26.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.51;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-60.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30"	NA	inter
CUST_40104_PI429285431	0.90319896	A	0.89388746	A	1.00647511346193	0	lncRNA	40949-1_{1..689}	n407518|NR_026973_5|lncRNA|Homosapiens||RefGeneNoncode|NR_026973_5||-0.7650810|-0.2191567	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407518|NR_026973_5|lncRNA|Homosapiens||RefGeneNoncode|NR_026973_5||-0.7650810|-0.2191567	chr6	  1210562	  1211250	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36949_PI429285431	3.548561	P	3.5803685	P	0.978193985977606	0	lncRNA	38101-4_{9001..11127}	n345417|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_966|NULL|-1.3111500|-0.4156690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345417|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_966|NULL|-1.3111500|-0.4156690	chr1	198780346	198782472	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70"	NA	inter
CUST_23696_PI429285431	1.8765514	A	2.4441924	A	0.67471914328404	0	lncRNA	25261-1_{1..425}	lnc-RBM22-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBM22-1:1	chr5	150051678	150052102	-	lnc-RBM22-1	lnc-RBM22-1:1	ENSG00000250309.2	CTC-345K18.2	MYOZ3	"hg19_refFlat_MYOZ3:range=chr5:150042504-1500564375'pad=0,hg19_refFlat_MYOZ3:range=chr5:150042504-1500564375'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80chr5:150041678-150058925"	NA	inner
CUST_28318_PI429285431	0.91760856	A	0.9109223	A	1.00464531846153	0	lncRNA	29963-1_{1..525}	n325623|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045944|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045944|-0.9098640|-0.0804411	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325623|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045944|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045944|-0.9098640|-0.0804411	chr13	113525634	113526158	-	NA	NA	NA	NA	ATP11A	NA	chr13:113515634-113537303	inner
CUST_27320_PI429285431	0.90808797	A	0.9111714	A	0.997865011526025	0	lncRNA	28880-1_{1..569}	n324475|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041290|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041290|-1.1592600|-0.3621856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324475|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041290|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041290|-1.1592600|-0.3621856	chr6	 77288886	 77289454	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48867_PI429285431	0.90671754	A	0.8986193	A	1.00562905615537	0	lncRNA	52703-1_{1..1782}	hg19_lincRNAsTranscripts_TCONS_l2_00018461 range=chr3:18486880-18572696 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018461 range=chr3:18486880-18572696 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	 18486880	 18488661	+	NA	NA	NA	NA	LOC100652784	NA	chr3:18486105-18505831	inter
CUST_40248_PI429285431	5.8270764	P	5.8809824	P	0.963324658197854	0	lncRNA	41063-2_{3001..3888}	n408158|NR_028137|lncRNA|Homosapiens||RefGeneNoncode|NR_028137||-1.0220200|-0.3291951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n408158|NR_028137|lncRNA|Homosapiens||RefGeneNoncode|NR_028137||-1.0220200|-0.3291951	chr7	107299960	107300847	-	NA	NA	NA	NA	SLC26A4	"hg19_refFlat_SLC26A4:range=chr7:107302087-1073558915'pad=0,hg19_refFlat_SLC26A4:range=chr7:107302087-1073558915'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.50chr7:107301080-107312243"	NA	inner
CUST_20807_PI429285431	3.9199815	P	4.530678	P	0.654880464365892	0	lncRNA	22438-1_{1..623}	lnc-TTC18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTC18-1:1	chr10	 75007567	 75008189	-	lnc-TTC18-1	lnc-TTC18-1:1	ENSG00000249376.1	RP11-152N13.11	FAM149B1	NA	chr10:74997567-75001939	inter
CUST_51193_PI429285431	0.91809803	A	0.90793777	A	1.00706741268552	0	lncRNA	54814-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008932 range=chr15:23186533-23208293 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008932 range=chr15:23186533-23208293 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 23186533	 23189532	-	NA	NA	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
CUST_24153_PI429285431	2.2859118	A	2.1869717	A	1.07098635543308	0	lncRNA	25705-1_{1..411}	lnc-PNLIPRP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PNLIPRP1-2:1	chr10	118616003	118616413	+	lnc-PNLIPRP1-2	lnc-PNLIPRP1-2:1	ENSG00000248381.1	RP11-539I5.2	ENO4	NA	chr10:118609023-118626135	inner
CUST_4290_PI429285431	0.9030816	A	1.1949356	A	0.816851651896577	0	lncRNA	4245-1_{1..744}	"transcript_id ""ENST00000535315.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535315.1"" | genecode_v17"	chr12	 65893471	 65894214	-	ENSG00000250748.2	ENST00000535315.1	RP11-230G5.2	RP11-230G5.2-005	NA	NA	NA	inter
CUST_8597_PI429285431	12.0659485	P	10.905545	P	2.23519934020556	0	lncRNA	10153-1_{1..696}	lnc-SYNCRIP-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SYNCRIP-2:5	chr6	 86387854	 86388549	-	lnc-SYNCRIP-2	lnc-SYNCRIP-2:5	ENSG00000203875	SNHG5	NA	NA	NA	inter
CUST_51798_PI429285431	8.841835	P	8.83381	P	1.00557800558648	0	lncRNA	55345-3_{6001..7710}	hg19_lincRNAsTranscripts_TCONS_l2_00012909 range=chr19:19852148-19863638 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012909 range=chr19:19852148-19863638 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 19858148	 19859857	-	NA	NA	NA	NA	ZNF14	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.81;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40chr19:19842148-19843921"	NA	inter
CUST_44194_PI429285431	2.3198574	A	1.7236056	A	1.5117837636543	0	lncRNA	48851-1_{1..2700}	"gi|333360889|ref|NR_038221.1| Homo sapiens uncharacterized LOC201617 (LOC201617), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|333360889|ref|NR_038221.1| Homo sapiens uncharacterized LOC201617 (LOC201617), non-coding RNA"	Chr3	 72200408	 72203107	+	201617	NR_038221.1	NA	NA	NA	NA	NA	inter
CUST_14797_PI429285431	4.651617	P	4.889402	P	0.848046336715875	0	lncRNA	16458-1_{1..264}	lnc-RP11-80A15.1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-80A15.1.1-4:1	chr14	 25591048	 25591311	+	lnc-RP11-80A15.1.1-4	lnc-RP11-80A15.1.1-4:1	XLOC_010774	linc-FOXG1-7	NA	NA	NA	inter
CUST_32596_PI429285431	0.91384214	A	0.90739536	A	1.004478566316	0	lncRNA	34257-1_{1..2339}	n339216|AK123086|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1648|NULL|-1.1129300|-0.3105348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339216|AK123086|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1648|NULL|-1.1129300|-0.3105348	chr16	 53521518	 53523856	-	NA	NA	NA	NA	RBL2	NA	chr16:53511518-53525560	inner
CUST_3231_PI429285431	1.2627248	A	0.9912097	A	1.20707481692107	0	lncRNA	3210-1_{1..270}	"transcript_id ""ENST00000518861.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518861.1"" | genecode_v17"	chr8	 93735252	 93735521	-	ENSG00000254020.1	ENST00000518861.1	RP11-100L22.4	RP11-100L22.4-001	NA	NA	NA	inter
CUST_44977_PI429285431	0.9251135	A	1.4400607	A	0.699818544407777	0	lncRNA	49487-1_{1..1552}	"gi|114687641|ref|NR_003186.1| Homo sapiens neutrophil cytosolic factor 1B pseudogene (NCF1B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|114687641|ref|NR_003186.1| Homo sapiens neutrophil cytosolic factor 1B pseudogene (NCF1B), non-coding RNA"	NW_003871064.1	   749875	   751426	+	654816	NR_003186.1	NA	NA	NA	NA	NA	Unknown
CUST_49856_PI429285431	0.926781	A	0.9134973	A	1.00925007917717	0	lncRNA	53608-1_{1..698}	hg19_lincRNAsTranscripts_TCONS_l2_00025993 range=chr7:66345524-66347910 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025993 range=chr7:66345524-66347910 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 66345524	 66346221	+	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40"	NA	inter
CUST_4941_PI429285431	5.7493243	P	5.774012	P	0.983033372615791	0	lncRNA	4885-1_{1..413}	"transcript_id ""ENST00000553929.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553929.1"" | genecode_v17"	chr14	 88490894	 88491306	+	ENSG00000258867.1	ENST00000553929.1	RP11-300J18.3	RP11-300J18.3-005	GPR65	NA	chr14:88480894-88481155	inter
CUST_10623_PI429285431	5.281359	P	4.7424545	P	1.45286887292571	0	lncRNA	12155-1_{1..251}	lnc-WDR53-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR53-1:1	chr3	196359331	196359581	-	lnc-WDR53-1	lnc-WDR53-1:1	XLOC_003399	linc-WDR53-1	LRRC33	NA	chr3:196366656-196369460	inter
CUST_35327_PI429285431	16.939413	P	16.931564	P	1.00545533868248	0	lncRNA	36736-1_{1..2797}	n342365|AK092774|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4857|NULL|1.2304900|-0.2450879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342365|AK092774|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4857|NULL|1.2304900|-0.2450879	chr19	 37527089	 37529885	+	NA	NA	NA	NA	NA	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-63.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80"	NA	inter
CUST_9980_PI429285431	2.1437304	A	1.8622901	A	1.2154076688601	0	lncRNA	11504-1_{1..1836}	lnc-MYC-2:22	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYC-2:22	chr8	129003821	129005656	+	lnc-MYC-2	lnc-MYC-2:22	XLOC_006924	linc-EFR3A-5	NA	NA	NA	inter
CUST_35481_PI429285431	7.849495	P	6.2165947	P	3.10135849310203	0	lncRNA	36889-1_{1..1580}	n342579|L07872|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5078|NULL|8.8381200|-0.0746992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342579|L07872|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5078|NULL|8.8381200|-0.0746992	chr4	 26322300	 26323879	+	NA	NA	NA	NA	RBPJ	NA	chr4:26321332-26433278	inner
CUST_51807_PI429285431	0.94236076	A	1.4379215	A	0.709285942555866	0	lncRNA	55358-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00012412 range=chr19:23031069-23044102 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012412 range=chr19:23031069-23044102 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 23031069	 23034068	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90"	NA	inter
CUST_44975_PI429285431	7.9315143	P	6.954377	P	1.96855538081255	0	lncRNA	49486-1_{1..3000}	"gi|395394002|ref|NR_003580.2| Homo sapiens general transcription factor II, i, pseudogene (LOC100093631), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|395394002|ref|NR_003580.2| Homo sapiens general transcription factor II, i, pseudogene (LOC100093631), non-coding RNA"	NW_003871064.1	   684160	   687159	+	100093631	NR_003580.2	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003999	2.6780891	A	2.7456384	A	0.954257615434918	0	lncRNA	THC2620722	NA	NA	NA	NA	XLOC_004382	NA	NA	THC2620722	NA	"BROAD Institute lincRNA (XLOC_004382), lincRNA [TCONS_00009400]"	NA	NA	Agilent_HUMAN_G3V2	THC2620722	THC2620722	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44538_PI429285431	9.756722	P	8.082962	P	3.19045016671821	0	lncRNA	49130-2_{3001..6000}	"gi|402478651|ref|NR_073105.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402478651|ref|NR_073105.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 4, non-coding RNA"	Chr5	 52288156	 52291155	+	3673	NR_073105.1	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.21;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50"	NA	inter
LNCA_21_P0005897	3.355891	P	2.722877	A	1.55080146169224	0	lncRNA	TCONS_00015152	NA	NA	NA	NA	XLOC_007197	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007197), lincRNA [TCONS_00015152]"	chr8:123673084-123673025	hs|8q24.13	Agilent_HUMAN_G3V2	TCONS_00015152	TCONS_00015152	chr8	123673025	123673084	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15974_PI429285431	6.74191	P	6.9956737	P	0.838705545341963	0	lncRNA	17672-1_{1..720}	lnc-ATP2B3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP2B3-1:2	chrX	152868938	152869657	+	lnc-ATP2B3-1	lnc-ATP2B3-1:2	XLOC_008088	linc-DUSP9-2	FAM58A	NA	chrX:152858938-152864632	inter
LNCA_21_P0008882	8.83363	P	8.870513	P	0.974758678880088	0	lncRNA	XR_109292	XR_109292	XR_109292	NA	Hs.407601	LOC100507534	uncharacterized LOC100507534	NA	THC2604910	NA	"PREDICTED: Homo sapiens hypothetical LOC100507534 (LOC100507534), miscRNA [XR_109292]"	chr16:47883683-47883624	hs|16q12.1	Agilent_HUMAN_G3V2	XR_109292	XR_109292	chr16	 47883624	 47883683	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6887_PI429285431	1.2050894	A	1.1505016	A	1.0385623277894	0	lncRNA	6837-2_{3001..3507}	"transcript_id ""ENST00000448049.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448049.1"" | genecode_v17"	chr21	 44869481	 44869987	+	ENSG00000188660.3	ENST00000448049.1	LINC00319	LINC00319-001	NA	NA	NA	inter
CUST_49115_PI429285431	0.9252541	A	0.95111346	A	0.982235343042123	0	lncRNA	52939-1_{1..310}	hg19_lincRNAsTranscripts_TCONS_l2_00020545 range=chr4:61654146-61655817 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020545 range=chr4:61654146-61655817 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 61654146	 61654455	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29517_PI429285431	5.6424713	P	4.55675	P	2.12243636578372	0	lncRNA	31275-1_{1..383}	n332961|AF092843|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000068370|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000068370|1.0075100|-0.3012914	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332961|AF092843|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000068370|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000068370|1.0075100|-0.3012914	chr12	 69202244	 69202626	+	NA	NA	NA	NA	MDM2	NA	chr12:69201971-69224170	inner
CUST_17961_PI429285431	0.97734934	A	1.1107538	A	0.911677540609284	0	lncRNA	19694-1_{1..1133}	lnc-KLF15-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF15-3:4	chr3	125993797	125994929	-	lnc-KLF15-3	lnc-KLF15-3:4	XLOC_003234	linc-ALDH1L1-1	LOC644662	NA	chr3:125985645-126004041	inter
CUST_26814_PI429285431	2.2064922	A	1.6057209	A	1.51652712225335	0	lncRNA	28327-1_{1..2228}	n323883|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056297|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056297|-0.9907860|-0.3921021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323883|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056297|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056297|-0.9907860|-0.3921021	chrX	 42921186	 42923413	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1381_PI429285431	3.6467118	P	3.9385772	P	0.816845197260097	0	lncRNA	1369-1_{1..555}	"transcript_id ""ENST00000485404.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000485404.1"" | genecode_v17"	chr3	 72202044	 72202598	+	ENSG00000243083.1	ENST00000485404.1	LINC00870	LINC00870-002	NA	NA	NA	inter
CUST_16627_PI429285431	0.91295826	A	0.91301996	A	0.999957233733462	0	lncRNA	18330-1_{1..3000}	lnc-ZNF783-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF783-1:1	chr7	149095768	149098767	+	lnc-ZNF783-1	lnc-ZNF783-1:1	XLOC_006285	linc-KRBA1-4	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-24.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.50"	NA	inter
CUST_11113_PI429285431	0.9638887	A	0.93052083	A	1.02339839083058	0	lncRNA	12672-1_{1..245}	lnc-AHCTF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AHCTF1-1:1	chr1	246949265	246949509	-	lnc-AHCTF1-1	lnc-AHCTF1-1:1	XLOC_001293	linc-TFB2M	LOC100130097	NA	chr1:246939265-246948062	inter
CUST_41581_PI429285431	0.9067892	A	0.9287578	A	0.984887878571123	0	lncRNA	42902-1_{1..111}	ENST00000362112 ncrna:miRNA chromosome:GRCh37:14:101491331:101491441:-1 gene:ENSG00000198982 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362112 ncrna:miRNA chromosome:GRCh37:14:101491331:101491441:-1 gene:ENSG00000198982 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101491331	101491441	-	ENSG00000198982	ENST00000362112	NA	NA	NA	NA	NA	inter
CUST_50321_PI429285431	0.91960543	A	0.91137594	A	1.0057205479911	0	lncRNA	54040-1_{1..338}	hg19_lincRNAsTranscripts_TCONS_l2_00029021 range=chr9:128003881-128022939 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029021 range=chr9:128003881-128022939 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	128003881	128004218	+	NA	NA	NA	NA	RABEPK	NA	chr9:127993881-127996438	inter
CUST_23810_PI429285431	1.9504701	A	0.92874503	A	2.03034524815952	0	lncRNA	25375-1_{1..510}	lnc-BCL9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BCL9-2:1	chr1	147230462	147230971	+	lnc-BCL9-2	lnc-BCL9-2:1	ENSG00000234482.1	RP11-433J22.2	GJA5	"hg19_refFlat_GJA5:range=chr1:147230270-1472313465'pad=0,hg19_refFlat_GJA5:range=chr1:147230270-1472313465'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70chr1:147228332-147240517"	NA	inner
CUST_50008_PI429285431	2.9290984	A	3.3952556	P	0.723890204834443	0	lncRNA	53745-1_{1..1534}	hg19_lincRNAsTranscripts_TCONS_l2_00028484 range=chr8:39172182-39274745 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028484 range=chr8:39172182-39274745 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 39172182	 39173715	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3079_PI429285431	4.2501473	P	4.4023633	P	0.899867191779408	0	lncRNA	3058-1_{1..379}	"transcript_id ""ENST00000521623.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521623.1"" | genecode_v17"	chr8	 38401170	 38401548	-	ENSG00000253361.1	ENST00000521623.1	RP11-675F6.3	RP11-675F6.3-001	NA	NA	NA	inter
CUST_25611_PI429285431	2.2746375	A	2.404627	A	0.913838101160382	0	lncRNA	27140-1_{1..555}	lnc-TK2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TK2-2:1	chr16	 66614328	 66614882	-	lnc-TK2-2	lnc-TK2-2:1	ENSG00000260650.1	RP11-403P17.2	CMTM2	"hg19_refFlat_CMTM2:range=chr16:66613511-666220225'pad=0,hg19_refFlat_CMTM2:range=chr16:66613511-666220225'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20chr16:66613351-66622178"	NA	inner
CUST_34313_PI429285431	3.8214564	P	4.7422566	P	0.528215960665141	0	lncRNA	35807-1_{1..572}	n341174|BC038729|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3640|NULL|1.3809800|-0.2765830	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341174|BC038729|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3640|NULL|1.3809800|-0.2765830	chr7	  3186628	  3187199	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28077_PI429285431	1.05409	A	1.1517725	A	0.934532990882095	0	lncRNA	29697-1_{1..1205}	n325346|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325419|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325419|-0.2706140|-0.3469749	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325346|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325419|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325419|-0.2706140|-0.3469749	chr2	 34792160	 34793364	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51250_PI429285431	2.618112	A	2.0991893	A	1.43288487394773	0	lncRNA	54861-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00008476 range=chr15:28895664-28930415 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008476 range=chr15:28895664-28930415 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28898664	 28901663	+	NA	NA	NA	NA	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40"	NA	inter
CUST_5807_PI429285431	0.9288101	A	0.9212085	A	1.00528293334622	0	lncRNA	5733-1_{1..488}	"transcript_id ""ENST00000583236.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583236.1"" | genecode_v17"	chr17	 30200945	 30201432	+	ENSG00000263990.1	ENST00000583236.1	CTC-542B22.2	CTC-542B22.2-001	UTP6	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00chr17:30190945-30223685"	NA	inner
CUST_14361_PI429285431	0.9272808	A	0.92965347	A	0.99835674210827	0	lncRNA	16020-1_{1..405}	lnc-ZFP42-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP42-2:8	chr4	188626118	188626522	+	lnc-ZFP42-2	lnc-ZFP42-2:8	XLOC_003829	linc-ZFP42-3	NA	NA	NA	inter
CUST_44587_PI429285431	7.6416593	P	7.7574954	P	0.922847328451656	0	lncRNA	49167-1_{1..457}	"gi|377823706|ref|NR_046368.1| Homo sapiens uncharacterized LOC100652853 (HP07349), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|377823706|ref|NR_046368.1| Homo sapiens uncharacterized LOC100652853 (HP07349), non-coding RNA"	Chr5	108063526	108063982	-	100652853	NR_046368.1	NA	NA	NA	NA	NA	inter
CUST_1536_PI429285431	0.9430429	A	1.1518334	A	0.865262329955712	0	lncRNA	1523-1_{1..577}	"transcript_id ""ENST00000470138.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000470138.1"" | genecode_v17"	chr3	164924748	164925324	+	ENSG00000244128.1	ENST00000470138.1	RP11-85M11.2	RP11-85M11.2-001	NA	NA	NA	inter
CUST_48081_PI429285431	7.2850795	P	8.564862	P	0.411857595403586	0	lncRNA	51957-1_{1..1778}	"gi|397138304|ref|XR_112710.2| PREDICTED: Homo sapiens uncharacterized LOC100288152 (LOC100288152), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138304|ref|XR_112710.2| PREDICTED: Homo sapiens uncharacterized LOC100288152 (LOC100288152), misc_RNA"	NA	NA	NA	NA	NA	XR_112710.2	NA	NA	NA	"hg19_refFlat_SLC9A3:range=chr5:473494-5244375'pad=0,hg19_refFlat_SLC9A3:range=chr5:473494-5244375'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90"	NA	Unknown
CUST_39819_PI429285431	3.8241282	P	4.102967	P	0.824254178117007	0	lncRNA	40729-1_{1..2156}	n406300|NR_003954|lncRNA|Homosapiens||RefGeneNoncode|NR_003954||5.0492700|-0.3282272	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406300|NR_003954|lncRNA|Homosapiens||RefGeneNoncode|NR_003954||5.0492700|-0.3282272	chr6	147122804	147124959	-	NA	NA	NA	NA	C6orf103	"hg19_refFlat_ADGB:range=chr6:146920177-1471363535'pad=0,hg19_refFlat_ADGB:range=chr6:146920177-1471363535'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70chr6:147112804-147134960"	NA	inner
CUST_28353_PI429285431	3.2021887	P	3.4838881	P	0.822621452297841	0	lncRNA	30002-1_{1..734}	n325662|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045426|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045426|-1.4206500|-0.3209465	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325662|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045426|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045426|-1.4206500|-0.3209465	chr13	 88723457	 88724190	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2973_PI429285431	1.4417526	A	2.1060314	A	0.63100406309476	0	lncRNA	2952-1_{1..512}	"transcript_id ""ENST00000522799.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522799.1"" | genecode_v17"	chr8	  2350992	  2351503	-	ENSG00000253444.1	ENST00000522799.1	AC133633.2	AC133633.2-001	NA	NA	NA	inter
CUST_22334_PI429285431	1.3805175	A	1.1269597	A	1.19214341282521	0	lncRNA	23929-1_{1..1126}	lnc-HS3ST3A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HS3ST3A1-1:1	chr17	 13536954	 13538079	-	lnc-HS3ST3A1-1	lnc-HS3ST3A1-1:1	ENSG00000266137.1	RP11-721K1.1	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60"	NA	inter
CUST_31009_PI429285431	1.621056	A	2.0737312	A	0.730686673319402	0	lncRNA	32797-1_{1..962}	n337207|BC105596|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386410|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386410|2.3819300|-0.2531260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337207|BC105596|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386410|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386410|2.3819300|-0.2531260	chr12	 21284140	 21285101	+	NA	NA	NA	NA	SLCO1B1	NA	chr12:21284128-21360030	inner
CUST_52189_PI429285431	0.9243715	A	0.91870743	A	1.00393375111879	0	lncRNA	55706-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00017666 range=chr22:25844098-25868137 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017666 range=chr22:25844098-25868137 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 25847098	 25850097	+	NA	NA	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00"	NA	inter
CUST_5738_PI429285431	0.9155247	A	1.5158143	A	0.659621532688221	0	lncRNA	5662-1_{1..804}	"transcript_id ""ENST00000436469.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436469.1"" | genecode_v17"	chr17	 14277456	 14278259	+	ENSG00000230647.1	ENST00000436469.1	AC022816.2	AC022816.2-001	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_2292_PI429285431	2.3005953	A	3.1912277	P	0.539377632247635	0	lncRNA	2284-1_{1..486}	"transcript_id ""ENST00000523434.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523434.1"" | genecode_v17"	chr5	104074955	104075440	-	ENSG00000251574.2	ENST00000523434.1	RP11-6N13.1	RP11-6N13.1-004	NA	NA	NA	inter
CUST_36122_PI429285431	5.701565	P	5.497477	P	1.15195790612738	0	lncRNA	37411-1_{1..1844}	n344697|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_246|NULL|-1.4040500|-0.1738794	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344697|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_246|NULL|-1.4040500|-0.1738794	chr16	  4296026	  4297869	-	NA	NA	NA	NA	SRL	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr16:4286026-4292081"	NA	inter
CUST_33654_PI429285431	0.9264573	A	0.914704	A	1.00818004196197	0	lncRNA	35218-1_{1..3000}	n340418|AK124789|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2879|NULL|-1.1411300|-0.3896031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340418|AK124789|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2879|NULL|-1.1411300|-0.3896031	chr5	 19467101	 19470100	-	NA	NA	NA	NA	CDH18	NA	chr5:19473140-19481509	inter
CUST_23480_PI429285431	0.918566	A	0.91304874	A	1.00383159507685	0	lncRNA	25047-1_{1..352}	lnc-ERGIC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ERGIC1-2:1	chr5	172204495	172204846	+	lnc-ERGIC1-2	lnc-ERGIC1-2:1	ENSG00000253736.1	RP11-779O18.3	DUSP1	"hg19_refFlat_FAM58BP:range=chr1:200182692-2001834505'pad=0,hg19_refFlat_FAM58BP:range=chr1:200182692-2001834505'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM58A:range=chrX:152853823-1528645295'pad=0,hg19_refFlat_FAM58A:range=chrX:152853823-1528645295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00chr5:172195093-172198203"	NA	inter
CUST_45913_PI429285431	3.267129	P	3.3448548	P	0.947550145773521	0	lncRNA	50223-1_{1..659}	"gi|310120793|ref|XR_110530.1| PREDICTED: Homo sapiens uncharacterized LOC100507165 (LOC100507165), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120793|ref|XR_110530.1| PREDICTED: Homo sapiens uncharacterized LOC100507165 (LOC100507165), misc_RNA"	Chr11	121899033	121899691	-	100507165	XR_110530.2	NA	NA	NA	NA	NA	inter
CUST_19114_PI429285431	0.96907955	A	0.9178925	A	1.03611709072765	0	lncRNA	20797-1_{1..1529}	lnc-AC018816.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-AC018816.3.1-1:1	NA	NA	     1528	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35579_PI429285431	1.1146165	A	1.0046985	A	1.07916689699889	0	lncRNA	36994-1_{1..2152}	n342711|BC017896|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5213|NULL|-1.1404500|-0.3719390	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342711|BC017896|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5213|NULL|-1.1404500|-0.3719390	chr17	 44620699	 44622850	+	NA	NA	NA	NA	LRRC37A2	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80chr17:44610699-44632821"	NA	inner
CUST_10348_PI429285431	3.655673	P	4.0900126	P	0.740032430203006	0	lncRNA	11877-1_{1..1653}	lnc-TMEM132C-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132C-6:1	chr12	127634957	127636609	+	lnc-TMEM132C-6	lnc-TMEM132C-6:1	XLOC_009944	linc-TMEM132C-5	NA	NA	NA	inter
CUST_9776_PI429285431	0.93402636	A	1.4717177	A	0.688872389476099	0	lncRNA	11293-1_{1..1590}	lnc-SNAPC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNAPC3-1:1	chr9	 16060644	 16062233	+	lnc-SNAPC3-1	lnc-SNAPC3-1:1	XLOC_007290	linc-CNTLN-5	NA	NA	NA	inter
CUST_40938_PI429285431	0.94019973	A	0.948158	A	0.994498934170531	0	lncRNA	41619-1_{1..1077}	n410891|NR_038353|lncRNA|Homosapiens||RefGeneNoncode|NR_038353||2.1549100|-0.1334350	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410891|NR_038353|lncRNA|Homosapiens||RefGeneNoncode|NR_038353||2.1549100|-0.1334350	chr5	177433966	177435042	+	NA	NA	NA	NA	NA	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-30.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80"	NA	inter
CUST_2353_PI429285431	0.8969107	A	0.89531165	A	1.00110899147586	0	lncRNA	2345-1_{1..582}	"transcript_id ""ENST00000507341.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507341.1"" | genecode_v17"	chr5	124704261	124704842	+	ENSG00000249932.1	ENST00000507341.1	RP11-395P13.2	RP11-395P13.2-001	NA	NA	NA	inter
CUST_29383_PI429285431	6.3554106	P	5.8724494	P	1.39760938388427	0	lncRNA	31135-1_{1..638}	n332653|AB053318|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059688|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059688|2.1592500|-0.2974214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332653|AB053318|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059688|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059688|2.1592500|-0.2974214	chr2	203880862	203881499	+	NA	NA	NA	NA	NBEAL1	NA	chr2:203879602-203931240	inner
CUST_2448_PI429285431	0.96942747	A	1.7918534	A	0.56549025585566	0	lncRNA	2440-1_{1..684}	"transcript_id ""ENST00000515739.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515739.1"" | genecode_v17"	chr5	177228205	177228888	-	ENSG00000248943.1	ENST00000515739.1	RP11-1026M7.3	RP11-1026M7.3-001	NA	NA	NA	inter
CUST_38961_PI429285431	1.4223436	A	1.4577535	A	0.975754489018946	0	lncRNA	39946-1_{1..1247}	n385144|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tll.2||-0.3042830|-0.2270320	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385144|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tll.2||-0.3042830|-0.2270320	chr7	 44622023	 44623269	+	NA	NA	NA	NA	DDX56	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.62;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50chr7:44612023-44614137"	NA	inter
CUST_27145_PI429285431	8.389709	P	8.683899	P	0.815530082614567	0	lncRNA	28681-1_{1..437}	n324261|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322898|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322898|3.2143600|-0.0262682	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324261|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322898|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322898|3.2143600|-0.0262682	chr7	  1626815	  1627251	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8669_PI429285431	6.8226056	P	6.933229	P	0.926187762312809	0	lncRNA	10220-1_{1..1329}	lnc-VSTM2B-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-VSTM2B-9:1	chr19	 28296513	 28297841	+	lnc-VSTM2B-9	lnc-VSTM2B-9:1	ENSG00000233391	AC006504.1	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10"	NA	inter
CUST_38005_PI429285431	0.9254121	A	0.9118753	A	1.00942715305338	0	lncRNA	39090-1_{1..2785}	n377578|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029941||-0.3805280|-0.4552886	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377578|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029941||-0.3805280|-0.4552886	chr6	   130802	   133586	-	NA	NA	NA	NA	NA	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
CUST_36108_PI429285431	5.3489933	P	4.993382	P	1.27952762899289	0	lncRNA	37400-3_{6001..7976}	n344685|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_234|NULL|-1.2890500|-0.3100919	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344685|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_234|NULL|-1.2890500|-0.3100919	chr13	 43420667	 43422642	-	NA	NA	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60"	NA	inter
CUST_6146_PI429285431	1.2420642	A	1.0434949	A	1.14755977194938	0	lncRNA	6072-2_{3001..4382}	"transcript_id ""ENST00000586922.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586922.2"" | genecode_v17"	chr18	 32863831	 32865212	-	ENSG00000268573.1	ENST00000586922.2	RP11-158H5.7	RP11-158H5.7-001	ZSCAN30	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10chr18:32850831-32870196"	NA	inner
CUST_14662_PI429285431	2.2586226	A	2.171163	A	1.06249761292268	0	lncRNA	16331-1_{1..512}	lnc-TRIB2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIB2-4:1	chr2	 13430541	 13431052	+	lnc-TRIB2-4	lnc-TRIB2-4:1	XLOC_001357	linc-FAM84A-4	NA	NA	NA	inter
CUST_26385_PI429285431	2.6924398	A	1.9990215	A	1.61711054027907	0	lncRNA	27891-1_{1..542}	lnc-C2orf42-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:1	chr2	 70315562	 70316103	-	lnc-C2orf42-3	lnc-C2orf42-3:1	ENSG00000179818.6	PCBP1-AS1	PCBP1	"hg19_refFlat_PCBP1:range=chr2:70314876-703159465'pad=0,hg19_refFlat_PCBP1:range=chr2:70314876-703159465'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80chr2:70314585-70316335"	NA	inner
LNCA_19_P00805452	2.2420144	A	3.1344206	P	0.538714872554866	0	lncRNA	TCONS_l2_00020391	NA	NA	NA	NA	XLOC_l2_010558	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010558), lincRNA [TCONS_l2_00020391]"	chr4:6678056-6678115	hs|4p16.1	Agilent_HUMAN_G3V2	TCONS_l2_00020391	TCONS_l2_00020391	chr4	  6678056	  6678115	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45611_PI429285431	1.0677543	A	1.1271863	A	0.959641863253515	0	lncRNA	49996-2_{3001..5667}	"gi|372220202|ref|NR_045663.3| Homo sapiens myopalladin (MYPN), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372220202|ref|NR_045663.3| Homo sapiens myopalladin (MYPN), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_045663.3	NA	NA	NA	NA	NA	Unknown
CUST_32708_PI429285431	1.1740122	A	1.4443865	A	0.829104410922475	0	lncRNA	34352-1_{1..3000}	n339340|AL832553|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1772|NULL|1.3738200|-0.2723003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339340|AL832553|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1772|NULL|1.3738200|-0.2723003	chr3	 44483132	 44486131	-	NA	NA	NA	NA	ZNF445	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40chr3:44481262-44497246"	NA	inner
CUST_50837_PI429285431	1.0506203	A	0.90897393	A	1.10316330211641	0	lncRNA	54482-1_{1..2268}	hg19_lincRNAsTranscripts_TCONS_l2_00005065 range=chr11:65593703-65600658 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005065 range=chr11:65593703-65600658 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	 65593703	 65595970	-	NA	NA	NA	NA	SNX32	NA	chr11:65601410-65610658	inter
CUST_47605_PI429285431	1.4928211	A	1.2049711	A	1.22081957492331	0	lncRNA	51607-2_{3001..6000}	"gi|383087740|ref|NR_001564.2| Homo sapiens X (inactive)-specific transcript (non-protein coding) (XIST), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|383087740|ref|NR_001564.2| Homo sapiens X (inactive)-specific transcript (non-protein coding) (XIST), non-coding RNA"	ChrX	 73043486	 73046485	-	7503	NR_001564.2	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
LNCA_21_P0002618	0.97557986	A	2.189031	A	0.431235800981782	0	lncRNA	TCONS_00004943	NA	NA	NA	NA	XLOC_001743	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001743), lincRNA [TCONS_00004943]"	chr2:169121718-169121777	hs|2q24.3	Agilent_HUMAN_G3V2	TCONS_00004943	TCONS_00004943	chr2	169121718	169121777	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15305_PI429285431	4.531185	P	4.480097	P	1.0360459572781	0	lncRNA	16983-1_{1..313}	lnc-TEKT5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TEKT5-1:1	chr16	 10716179	 10716491	-	lnc-TEKT5-1	lnc-TEKT5-1:1	XLOC_011873	linc-EMP2	TEKT5	NA	chr16:10721361-10726242	inter
CUST_25533_PI429285431	3.2366397	P	3.149091	A	1.06256323417875	0	lncRNA	27063-1_{1..1501}	lnc-GRIK2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GRIK2-2:1	chr6	101329347	101330847	+	lnc-GRIK2-2	lnc-GRIK2-2:1	ENSG00000260000.1	RP3-467N11.1	ASCC3	NA	chr6:101319347-101329224	inter
CUST_27908_PI429285431	1.10309	A	1.1774619	A	0.949755521973214	0	lncRNA	29505-1_{1..269}	n325148|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331148|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331148|-1.0655200|-0.3367031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325148|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331148|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331148|-1.0655200|-0.3367031	chr2	123917311	123917579	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38154_PI429285431	0.9211832	A	0.9139099	A	1.00505419696801	0	lncRNA	39227-1_{1..3000}	n381375|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hzq.1||1.6402700|-0.1785249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n381375|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hzq.1||1.6402700|-0.1785249	chr1	243219611	243222610	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70"	NA	inter
CUST_33809_PI429285431	1.5615301	A	1.966982	A	0.754999764738593	0	lncRNA	35360-1_{1..3000}	n340597|CR627150|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3059|NULL|-1.1678400|-0.3408608	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340597|CR627150|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3059|NULL|-1.1678400|-0.3408608	chr5	117686660	117689659	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37673_PI429285431	0.9236975	A	0.9103628	A	1.00928575730898	0	lncRNA	38766-1_{1..467}	n346159|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1709|NULL|-1.2935600|-0.2231886	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346159|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1709|NULL|-1.2935600|-0.2231886	chr12	  9549658	  9550124	-	NA	NA	NA	NA	LOC728715	NA	chr12:9549658-9555094	inter
CUST_6388_PI429285431	3.6246636	P	4.1794457	P	0.680759870257732	0	lncRNA	6317-1_{1..437}	"transcript_id ""ENST00000599524.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599524.1"" | genecode_v17"	chr19	 21776487	 21776923	-	ENSG00000268240.1	ENST00000599524.1	RP11-678G14.4	RP11-678G14.4-002	NA	NA	NA	inter
CUST_46001_PI429285431	11.130163	P	10.803529	P	1.25408401324538	0	lncRNA	50287-1_{1..902}	"gi|386869525|ref|NR_048547.1| Homo sapiens microsomal glutathione S-transferase 1 (MGST1), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386869525|ref|NR_048547.1| Homo sapiens microsomal glutathione S-transferase 1 (MGST1), transcript variant 9, non-coding RNA"	Chr12	 16500712	 16501613	+	4257	NR_048547.1	NA	NA	NA	NA	NA	inter
CUST_5323_PI429285431	5.7424192	P	5.983038	P	0.846382204684954	0	lncRNA	5262-1_{1..791}	"transcript_id ""ENST00000556447.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556447.1"" | genecode_v17"	chr15	 94571694	 94572484	-	ENSG00000258754.3	ENST00000556447.1	CTD-3049M7.1	CTD-3049M7.1-010	NA	NA	NA	inter
CUST_18390_PI429285431	1.3336296	A	2.1113577	A	0.583284604271093	0	lncRNA	20115-2_{3001..3133}	lnc-RP11-890B15.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-890B15.2.1-1:1	chr11	130738365	130738497	-	lnc-RP11-890B15.2.1-1	lnc-RP11-890B15.2.1-1:1	ENSG00000255455	RP11-890B15.3	SNX19	NA	chr11:130745766-130747889	inter
CUST_9245_PI429285431	2.8723314	A	4.348286	P	0.359495445953506	0	lncRNA	10755-1_{1..1390}	lnc-HIST1H3F-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HIST1H3F-1:1	chr6	 26252268	 26253657	-	lnc-HIST1H3F-1	lnc-HIST1H3F-1:1	ENSG00000245671	ENST00000499344	HIST1H4G	"hg19_refFlat_HIST1H2BF:range=chr6:26199787-262001675'pad=0,hg19_refFlat_HIST1H2BF:range=chr6:26199787-262001675'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_HIST2H2BE:range=chr1:149857810-1498581905'pad=0,hg19_refFlat_HIST2H2BE:range=chr1:149857810-1498581905'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_HIST2H2BF:range=chr1:149783498-1497838785'pad=0,hg19_refFlat_HIST2H2BF:range=chr1:149783498-1497838785'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_HIST1H2BN:range=chr6:27806440-278068205'pad=0,hg19_refFlat_HIST1H2BN:range=chr6:27806440-278068205'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_HIST1H2BB:range=chr6:26043505-260438855'pad=0,hg19_refFlat_HIST1H2BB:range=chr6:26043505-260438855'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_HIST1H2BC:range=chr6:26123752-261241325'pad=0,hg19_refFlat_HIST1H2BC:range=chr6:26123752-261241325'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_HIST1H2BE:range=chr6:26184024-261844045'pad=0,hg19_refFlat_HIST1H2BE:range=chr6:26184024-261844045'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_HIST2H2BF:range=chr1:149754789-1497838785'pad=0,hg19_refFlat_HIST2H2BF:range=chr1:149754789-1497838785'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_HIST1H2BH:range=chr6:26251879-262522595'pad=0,hg19_refFlat_HIST1H2BH:range=chr6:26251879-262522595'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.00;hg19_refFlat_HIST1H2BD:range=chr6:26158398-261587785'pad=0,hg19_refFlat_HIST1H2BD:range=chr6:26158398-261587785'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_HIST1H2BI:range=chr6:26273204-262735845'pad=0,hg19_refFlat_HIST1H2BI:range=chr6:26273204-262735845'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_HIST1H2BO:range=chr6:27861241-278616215'pad=0,hg19_refFlat_HIST1H2BO:range=chr6:27861241-278616215'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_HIST1H2BJ:range=chr6:27100149-271005295'pad=0,hg19_refFlat_HIST1H2BJ:range=chr6:27100149-271005295'pad=0 3'pad=0 strand=- repeatMasking=none,-96.70;hg19_refFlat_HIST1H2BL:range=chr6:27775304-277756845'pad=0,hg19_refFlat_HIST1H2BL:range=chr6:27775304-277756845'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_HIST2H2BF:range=chr1:149398799-1493991795'pad=0,hg19_refFlat_HIST2H2BF:range=chr1:149398799-1493991795'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_HIST1H2BM:range=chr6:27782822-277832025'pad=0,hg19_refFlat_HIST1H2BM:range=chr6:27782822-277832025'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_HIST1H2BG:range=chr6:26216491-262168715'pad=0,hg19_refFlat_HIST1H2BG:range=chr6:26216491-262168715'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_HIST1H2BK:range=chr6:27114197-271145775'pad=0,hg19_refFlat_HIST1H2BK:range=chr6:27114197-271145775'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00chr6:26246839-26247205"	NA	inner
CUST_40962_PI429285431	3.4532359	P	3.938067	P	0.714580722767403	0	lncRNA	41637-1_{1..3000}	n410989|NR_038451|lncRNA|Homosapiens||RefGeneNoncode|NR_038451||0.2533060|-0.3815304	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410989|NR_038451|lncRNA|Homosapiens||RefGeneNoncode|NR_038451||0.2533060|-0.3815304	chr1	202518231	202521230	+	NA	NA	NA	NA	PPP1R12B	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr1:202508231-202533878"	NA	inner
CUST_47245_PI429285431	0.9604945	A	1.0593181	A	0.933794114027374	0	lncRNA	51319-1_{1..2344}	"gi|372266162|ref|NR_045948.1| Homo sapiens visual system homeobox 1 (VSX1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372266162|ref|NR_045948.1| Homo sapiens visual system homeobox 1 (VSX1), transcript variant 5, non-coding RNA"	Chr20	 25051521	 25053864	-	30813	NR_045948.1	NA	NA	NA	NA	NA	inter
CUST_11455_PI429285431	0.901134	A	0.89993364	A	1.00083237237943	0	lncRNA	13022-1_{1..271}	lnc-MAP6-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP6-2:3	chr11	 75470364	 75470634	-	lnc-MAP6-2	lnc-MAP6-2:3	XLOC_009505	linc-MAP6-1	DGAT2	NA	chr11:75479778-75480461	inter
CUST_27974_PI429285431	0.915003	A	0.9128388	A	1.0015012348547	0	lncRNA	29579-1_{1..708}	n325224|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329513|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329513|-1.1074000|-0.3505437	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325224|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329513|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329513|-1.1074000|-0.3505437	chr2	102856229	102856936	-	NA	NA	NA	NA	IL1RL2	NA	chr2:102846229-102855811	inter
CUST_16985_PI429285431	0.9290259	A	0.9139369	A	1.01051378325936	0	lncRNA	18694-1_{1..447}	lnc-DDX58-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DDX58-1:1	chr9	 31916752	 31917198	-	lnc-DDX58-1	lnc-DDX58-1:1	XLOC_007663	linc-LINGO2-2	NA	NA	NA	inter
CUST_27833_PI429285431	0.91917706	A	0.9192632	A	0.999940294084336	0	lncRNA	29420-1_{1..473}	n325062|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078025|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078025|-0.3449090|-0.2653727	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325062|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078025|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078025|-0.3449090|-0.2653727	chr20	 12234260	 12234732	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26057_PI429285431	2.0360782	A	2.476937	A	0.736695941566482	0	lncRNA	27571-1_{1..466}	lnc-CCDC7-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC7-3:1	chr10	 32571419	 32571884	+	lnc-CCDC7-3	lnc-CCDC7-3:1	ENSG00000226842.1	RP11-166N17.3	EPC1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-62.50chr10:32561419-32581757"	NA	inner
CUST_50355_PI429285431	5.589248	P	5.588178	P	1.00074194258653	0	lncRNA	54069-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00029138 range=chr9:139442055-139447353 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029138 range=chr9:139442055-139447353 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	139442055	139445054	+	NA	NA	NA	NA	NOTCH1	NA	chr9:139432055-139440238	inter
CUST_23992_PI429285431	1.059588	A	1.7671292	A	0.612362906394985	0	lncRNA	25547-1_{1..1685}	lnc-ART3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ART3-1:1	chr4	 76926226	 76927910	+	lnc-ART3-1	lnc-ART3-1:1	ENSG00000245928.2	RP11-630D6.5	ART3	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00chr4:76932337-76937095"	NA	inner
CUST_2300_PI429285431	1.0829444	A	0.9069906	A	1.12971103680273	0	lncRNA	2293-1_{1..805}	"transcript_id ""ENST00000509458.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509458.1"" | genecode_v17"	chr5	107035536	107036340	-	ENSG00000249959.1	ENST00000509458.1	RP11-252I13.2	RP11-252I13.2-001	NA	NA	NA	inter
CUST_41879_PI429285431	0.9489385	A	0.9174832	A	1.02204257815006	0	lncRNA	43552-1_{1..77}	ENST00000578358 ncrna:miRNA chromosome:GRCh37:10:90823092:90823168:-1 gene:ENSG00000265375 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578358 ncrna:miRNA chromosome:GRCh37:10:90823092:90823168:-1 gene:ENSG00000265375 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 90823092	 90823168	-	ENSG00000265375	ENST00000578358	NA	NA	NA	NA	NA	inter
CUST_27488_PI429285431	0.9172452	A	0.9204564	A	0.997776641105887	0	lncRNA	29059-1_{1..475}	n324665|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319663|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319663|-0.7572050|-0.2897290	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324665|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319663|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319663|-0.7572050|-0.2897290	chr22	 40995709	 40996183	+	NA	NA	NA	NA	MKL1	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10chr22:40985709-41011146"	NA	inner
CUST_10049_PI429285431	1.1600182	A	0.9617485	A	1.14732148651723	0	lncRNA	11574-1_{1..377}	lnc-U2SURP-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-U2SURP-3:2	chr3	142652730	142653106	+	lnc-U2SURP-3	lnc-U2SURP-3:2	XLOC_002845	linc-SR140-2	NA	NA	NA	inter
CUST_14802_PI429285431	0.90983444	A	0.90662104	A	1.00222984155713	0	lncRNA	16463-1_{1..264}	lnc-CBLN2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLN2-3:1	chr18	 69454221	 69454484	-	lnc-CBLN2-3	lnc-CBLN2-3:1	XLOC_012876	linc-RTTN-4	NA	NA	NA	inter
LNCA_21_P0009161	0.9257644	A	0.91131806	A	1.01006374208844	0	lncRNA	ENST00000446671	NA	BC033345	NA	Hs.638944	XLOC_012120	NA	ENST00000446671	THC2605739	NA	"BROAD Institute lincRNA (XLOC_012120), lincRNA [TCONS_00025160]"	chr17:14955534-14955593	hs|17p12	Agilent_HUMAN_G3V2	ENST00000446671	ENST00000446671	chr17	 14955534	 14955593	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26259_PI429285431	2.9780846	A	3.6856275	P	0.612362184817453	0	lncRNA	27766-1_{1..648}	lnc-NDUFA5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFA5-1:2	chr7	123264597	123265244	-	lnc-NDUFA5-1	lnc-NDUFA5-1:2	ENSG00000230442.1	RP11-390E23.3	ASB15	"hg19_refFlat_ASB15:range=chr7:123254557-1232770355'pad=0,hg19_refFlat_ASB15:range=chr7:123254557-1232770355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80chr7:123254597-123274783"	NA	inner
CUST_48622_PI429285431	2.0458057	A	1.674567	A	1.29346292309868	0	lncRNA	52469-1_{1..261}	hg19_lincRNAsTranscripts_TCONS_l2_00013739 range=chr2:83059730-83093018 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013739 range=chr2:83059730-83093018 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 83059730	 83059990	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31451_PI429285431	3.8839505	A	2.9690766	A	1.88540426925363	0	lncRNA	33218-1_{1..1435}	n337920|BC040655|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|304|NULL|-0.8849180|-0.3999035	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337920|BC040655|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|304|NULL|-0.8849180|-0.3999035	chr1	 48761043	 48762477	-	NA	NA	NA	NA	SPATA6	NA	chr1:48761044-48772459	inner
CUST_30999_PI429285431	1.1497985	A	1.0964013	A	1.03770559633192	0	lncRNA	32787-1_{1..647}	n337162|AF399616|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000384021|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000384021|-0.8341210|-0.2361057	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337162|AF399616|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000384021|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000384021|-0.8341210|-0.2361057	chr1	248343489	248344135	-	NA	NA	NA	NA	OR2M2	"hg19_refFlat_OR2M5:range=chr1:248308450-2483093885'pad=0,hg19_refFlat_OR2M5:range=chr1:248308450-2483093885'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_OR2M2:range=chr1:248343288-2483443315'pad=0,hg19_refFlat_OR2M2:range=chr1:248343288-2483443315'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_OR2M3:range=chr1:248366370-2483673085'pad=0,hg19_refFlat_OR2M3:range=chr1:248366370-2483673085'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_OR2M7:range=chr1:248486932-2484878705'pad=0,hg19_refFlat_OR2M7:range=chr1:248486932-2484878705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60chr1:248333489-248344331"	NA	inner
CUST_35775_PI429285431	6.3968434	P	6.9591103	P	0.677237187607537	0	lncRNA	37190-2_{3001..5954}	n344460|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_8|NULL|-1.3082100|-0.3363473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344460|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_8|NULL|-1.3082100|-0.3363473	chr7	 30426845	 30429798	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4723_PI429285431	5.503652	P	5.4890327	P	1.01018484259301	0	lncRNA	4669-1_{1..3000}	"transcript_id ""ENST00000551334.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551334.1"" | genecode_v17"	chr14	 19854098	 19857097	-	ENSG00000244306.5	ENST00000551334.1	CTD-2314B22.3	CTD-2314B22.3-001	NA	"hg19_refFlat_TOMM40:range=chr19:45394673-454064265'pad=0,hg19_refFlat_TOMM40:range=chr19:45394673-454064265'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.90"	NA	inter
CUST_33194_PI429285431	4.503342	P	4.548087	P	0.969461156505428	0	lncRNA	34786-1_{1..2325}	n339889|BC043263|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2337|NULL|-1.2989100|-0.3625229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339889|BC043263|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2337|NULL|-1.2989100|-0.3625229	chr18	 53548918	 53551242	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8836_PI429285431	1.6052363	A	2.3407571	A	0.600601173975776	0	lncRNA	10375-2_{3001..4986}	lnc-ASXL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ASXL1-1:1	chr20	 30945166	 30947151	+	lnc-ASXL1-1	lnc-ASXL1-1:1	ENSG00000249039	XLOC_013506	ASXL1	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.36;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30chr20:30946147-30955985"	NA	inter
CUST_22681_PI429285431	1.1034628	A	1.511402	A	0.753699217518739	0	lncRNA	24264-1_{1..475}	lnc-AC009120.10.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC009120.10.1-1:1	chr16	 74320967	 74321441	+	lnc-AC009120.10.1-1	lnc-AC009120.10.1-1:1	ENSG00000261248.1	AC009120.10	PSMD7	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.70chr16:74330673-74331417"	NA	inter
CUST_50398_PI429285431	0.8927696	A	1.0803301	A	0.878089256386458	0	lncRNA	54102-1_{1..654}	hg19_lincRNAsTranscripts_TCONS_l2_00030116 range=chrX:1852853-1861240 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030116 range=chrX:1852853-1861240 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	  1852853	  1853506	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20"	NA	inter
CUST_20673_PI429285431	4.2148085	P	3.4532359	P	1.6953376092235	0	lncRNA	22310-2_{3001..5053}	lnc-ZNF23-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZNF23-1:1	chr16	 71484500	 71486552	-	lnc-ZNF23-1	lnc-ZNF23-1:1	ENSG00000262086.1	RP11-510M2.10	ZNF23	NA	chr16:71481500-71496117	inner
CUST_28085_PI429285431	6.0807867	P	6.270898	P	0.876538096176536	0	lncRNA	29706-1_{1..805}	n325356|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324765|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324765|-1.2375200|-0.2520152	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325356|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324765|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324765|-1.2375200|-0.2520152	chr2	 30000853	 30001657	+	NA	NA	NA	NA	ALK	NA	chr2:29990853-30016332	inner
LNCA_21_P0006560	4.4158573	P	4.9995494	P	0.667253974998506	0	lncRNA	ENST00000447570	NA	AK123782	NA	Hs.522607	XLOC_007960	NA	ENST00000447570	THC2624445	NA	"BROAD Institute lincRNA (XLOC_007960), lincRNA [TCONS_00017417]"	chrX:40122347-40122406	hs|Xp11.4	Agilent_HUMAN_G3V2	ENST00000447570	ENST00000447570	chrX	 40122347	 40122406	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_438_PI429285431	1.1470107	A	1.2738495	A	0.915836011936236	0	lncRNA	430-1_{1..555}	"transcript_id ""ENST00000594699.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594699.1"" | genecode_v17"	chr1	147635156	147635710	+	ENSG00000232265.2	ENST00000594699.1	XXyac-YX155B6.5	XXyac-YX155B6.5-003	NA	NA	NA	inter
CUST_332_PI429285431	4.3355064	P	4.1927166	P	1.10403797762151	0	lncRNA	325-1_{1..999}	"transcript_id ""ENST00000602852.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602852.1"" | genecode_v17"	chr1	 98509852	 98510850	-	ENSG00000225206.3	ENST00000602852.1	MIR137HG	MIR137HG-002	NA	NA	NA	inter
CUST_50676_PI429285431	2.1059194	A	3.273324	P	0.445221571583624	0	lncRNA	54350-1_{1..2792}	hg19_lincRNAsTranscripts_TCONS_l2_00003533 range=chr10:46193896-46217852 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003533 range=chr10:46193896-46217852 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 46193896	 46196687	-	NA	NA	NA	NA	FAM21C	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_AGAP6:range=chr10:51748476-517699465'pad=0,hg19_refFlat_AGAP6:range=chr10:51748476-517699465'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_AGAP11:range=chr10:88761480-887696625'pad=0,hg19_refFlat_AGAP11:range=chr10:88761480-887696625'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.70;hg19_refFlat_AGAP5:range=chr10:75434357-754575135'pad=0,hg19_refFlat_AGAP5:range=chr10:75434357-754575135'pad=0 3'pad=0 strand=- repeatMasking=none,-100.70;hg19_refFlat_AGAP8:range=chr10:51224990-512464095'pad=0,hg19_refFlat_AGAP8:range=chr10:51224990-512464095'pad=0 3'pad=0 strand=- repeatMasking=none,-100.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_AGAP9:range=chr10:47192142-472135145'pad=0,hg19_refFlat_AGAP9:range=chr10:47192142-472135145'pad=0 3'pad=0 strand=- repeatMasking=none,-96.10;hg19_refFlat_AGAP7:range=chr10:51464464-514862015'pad=0,hg19_refFlat_AGAP7:range=chr10:51464464-514862015'pad=0 3'pad=0 strand=- repeatMasking=none,-100.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_AGAP9:range=chr10:48215836-482372105'pad=0,hg19_refFlat_AGAP9:range=chr10:48215836-482372105'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_AGAP1:range=chr2:236403331-2370327665'pad=0,hg19_refFlat_AGAP1:range=chr2:236403331-2370327665'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.10;hg19_refFlat_AGAP4:range=chr10:46321363-463427955'pad=0,hg19_refFlat_AGAP4:range=chr10:46321363-463427955'pad=0 3'pad=0 strand=- repeatMasking=none,-100.70chr10:46222648-46227852"	NA	inter
LNCA_21_P0002641	5.2206297	P	5.5994678	P	0.769056714743778	0	lncRNA	ENST00000445279	XR_112271	XR_112271	NA	Hs.385965	XLOC_001937	NA	ENST00000445279	THC2671701	NA	"PREDICTED: Homo sapiens hypothetical LOC100508751 (LOC100508751), miscRNA [XR_112271]"	chr2:897279-896111	hs|2p25.3	Agilent_HUMAN_G3V2	ENST00000445279	ENST00000445279	chr2	   896111	   897279	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6045_PI429285431	1.1341227	A	0.9199416	A	1.16004526463523	0	lncRNA	5971-1_{1..679}	"transcript_id ""ENST00000585072.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585072.1"" | genecode_v17"	chr18	  1883525	  1884203	-	ENSG00000263745.1	ENST00000585072.1	RP11-161I6.2	RP11-161I6.2-002	NA	NA	NA	inter
CUST_13322_PI429285431	1.5135972	A	0.9755301	A	1.45202581230923	0	lncRNA	14957-1_{1..519}	lnc-SH2D4A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SH2D4A-1:1	chr8	 19103785	 19104303	+	lnc-SH2D4A-1	lnc-SH2D4A-1:1	XLOC_006731	linc-SH2D4A-1	SH2D4A	NA	chr8:19095947-19113881	inter
CUST_5898_PI429285431	6.702263	P	6.723934	P	0.985091062790329	0	lncRNA	5829-1_{1..585}	"transcript_id ""ENST00000510059.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510059.1"" | genecode_v17"	chr17	 49412622	 49413206	+	ENSG00000249658.1	ENST00000510059.1	RP11-1018N14.4	RP11-1018N14.4-001	NA	NA	NA	inter
CUST_6884_PI429285431	4.5862255	P	4.6471663	P	0.958638774769526	0	lncRNA	6835-1_{1..285}	"transcript_id ""ENST00000431150.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431150.1"" | genecode_v17"	chr21	 44251150	 44251434	-	ENSG00000225218.1	ENST00000431150.1	AP001628.6	AP001628.6-001	WDR4	NA	chr21:44263204-44266587	inter
LNCA_21_P0006280	0.926034	A	0.917418	A	1.00599002498619	0	lncRNA	TCONS_00016359	NA	NA	NA	NA	XLOC_007739	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007739), lincRNA [TCONS_00016359]"	chr9:76866378-76866319	hs|9q21.13	Agilent_HUMAN_G3V2	TCONS_00016359	TCONS_00016359	chr9	 76866319	 76866378	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29727_PI429285431	10.078345	P	9.829652	P	1.18813024857094	0	lncRNA	31489-1_{1..449}	n333399|BC008888|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087166|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087166|1.3029100|-0.0503524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333399|BC008888|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087166|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087166|1.3029100|-0.0503524	chr19	 38794994	 38795442	+	NA	NA	NA	NA	YIF1B	NA	chr19:38794200-38805677	inner
LNCA_21_P0007735	0.92688936	A	0.9190174	A	1.00547134028893	0	lncRNA	TCONS_00020865	NA	NA	NA	NA	XLOC_010146	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010146), lincRNA [TCONS_00020865]"	chr12:89177138-89177079	hs|12q21.33	Agilent_HUMAN_G3V2	TCONS_00020865	TCONS_00020865	chr12	 89177079	 89177138	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40446_PI429285431	3.637701	P	3.608329	P	1.02056777949268	0	lncRNA	41222-2_{3001..4077}	n409345|NR_033708|lncRNA|Homosapiens||RefGeneNoncode|NR_033708||1.7862600|-0.1667215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n409345|NR_033708|lncRNA|Homosapiens||RefGeneNoncode|NR_033708||1.7862600|-0.1667215	chr1	  3655547	  3656623	-	NA	NA	NA	NA	CCDC27	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70chr1:3668965-3673937"	NA	inter
CUST_30929_PI429285431	10.517682	P	10.511784	P	1.0040965500867	0	lncRNA	32717-1_{1..1260}	n336986|BC108741|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000339145|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000339145|6.9583800|-0.0728750	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336986|BC108741|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000339145|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000339145|6.9583800|-0.0728750	chr20	 17639971	 17641230	-	NA	NA	NA	NA	RRBP1	NA	chr20:17629971-17662928	inner
CUST_5093_PI429285431	2.4597898	A	2.6161363	A	0.897294516627859	0	lncRNA	5033-1_{1..510}	"transcript_id ""ENST00000568414.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568414.1"" | genecode_v17"	chr15	 21333027	 21333536	-	ENSG00000260986.1	ENST00000568414.1	RP11-854K16.3	RP11-854K16.3-001	NA	NA	NA	inter
CUST_21660_PI429285431	3.089071	P	3.209826	P	0.919706218374808	0	lncRNA	23270-1_{1..556}	lnc-PAQR4-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAQR4-1:5	chr16	  3051680	  3052235	+	lnc-PAQR4-1	lnc-PAQR4-1:5	ENSG00000262152.1	LINC00514	NA	NA	NA	inter
CUST_42582_PI429285431	2.9144425	A	2.4833257	A	1.34827688326317	0	lncRNA	45423-1_{1..129}	ENST00000384520 ncrna:snoRNA chromosome:GRCh37:2:105349692:105349820:1 gene:ENSG00000207249 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384520 ncrna:snoRNA chromosome:GRCh37:2:105349692:105349820:1 gene:ENSG00000207249 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	105349692	105349820	+	ENSG00000207249	ENST00000384520	NA	NA	NA	NA	NA	inter
CUST_10795_PI429285431	1.6955574	A	4.811881	P	0.1153169428104	0	lncRNA	12332-1_{1..351}	lnc-NOC2L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOC2L-2:1	chr1	   845256	   845606	-	lnc-NOC2L-2	lnc-NOC2L-2:1	XLOC_000669	linc-OR4F16-3	NA	NA	NA	inter
CUST_13888_PI429285431	0.90370363	A	1.0285484	A	0.917102715614234	0	lncRNA	15532-1_{1..1038}	lnc-IRF2BPL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRF2BPL-1:1	chr14	 77542448	 77543485	-	lnc-IRF2BPL-1	lnc-IRF2BPL-1:1	XLOC_011081	linc-C14orf4-2	NA	NA	NA	inter
CUST_16031_PI429285431	2.3266811	A	2.9002886	A	0.671934494674634	0	lncRNA	17728-1_{1..287}	lnc-PIPOX-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PIPOX-1:2	chr17	 27343365	 27343651	+	lnc-PIPOX-1	lnc-PIPOX-1:2	XLOC_012160	linc-PIPOX-1	NA	NA	NA	inter
CUST_13572_PI429285431	2.9662948	A	3.5875218	P	0.650117772828862	0	lncRNA	15213-1_{1..1023}	lnc-IRX3-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRX3-4:5	chr16	 54962682	 54963704	-	lnc-IRX3-4	lnc-IRX3-4:5	XLOC_011950	linc-IRX3-5	IRX5	NA	chr16:54965111-54968397	inter
CUST_17391_PI429285431	1.4198831	A	1.481565	A	0.958146456759278	0	lncRNA	19114-1_{1..684}	lnc-ERP44-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERP44-3:1	chr9	102582103	102582786	-	lnc-ERP44-3	lnc-ERP44-3:1	XLOC_007808	linc-ALG2-5	NR4A3	NA	chr9:102584137-102592301	inter
CUST_2732_PI429285431	3.0042832	P	3.0147862	A	0.992746311080242	0	lncRNA	2717-1_{1..759}	"transcript_id ""ENST00000465755.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000465755.1"" | genecode_v17"	chr7	    70972	    71730	-	ENSG00000232325.3	ENST00000465755.1	AC093627.7	AC093627.7-001	NA	NA	NA	inter
CUST_50483_PI429285431	1.9838169	A	2.180443	A	0.87258882333358	0	lncRNA	54181-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030285 range=chrX:100741010-100750790 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030285 range=chrX:100741010-100750790 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	100741010	100744009	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_30310_PI429285431	4.8704762	P	5.7504125	P	0.543391423353202	0	lncRNA	32086-1_{1..354}	n335217|AY536249|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255243|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255243|2.3466100|-0.1004110	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335217|AY536249|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255243|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255243|2.3466100|-0.1004110	chr22	 23615806	 23616159	+	NA	NA	NA	NA	BCR	NA	chr22:23605806-23637298	inner
CUST_45860_PI429285431	1.0762703	A	1.0584923	A	1.01239900874665	0	lncRNA	50189-1_{1..796}	"gi|397139412|ref|XR_159126.1| PREDICTED: Homo sapiens uncharacterized LOC100506113, transcript variant 3 (LOC100506113), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139412|ref|XR_159126.1| PREDICTED: Homo sapiens uncharacterized LOC100506113, transcript variant 3 (LOC100506113), misc_RNA"	NA	NA	NA	NA	NA	XR_159126.1	NA	NA	NA	NA	NA	Unknown
CUST_10858_PI429285431	3.8772836	P	4.1474233	P	0.829239244483857	0	lncRNA	12395-2_{3001..3086}	lnc-PTPRE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPRE-1:1	chr10	130118187	130118272	+	lnc-PTPRE-1	lnc-PTPRE-1:1	XLOC_008662	linc-MGMT-4	NA	NA	NA	inter
CUST_36335_PI429285431	0.92092025	A	0.90783644	A	1.0091102540461	0	lncRNA	37566-1_{1..1304}	n344863|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_412|NULL|-1.3090100|-0.2328443	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344863|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_412|NULL|-1.3090100|-0.2328443	chr5	179341388	179342691	-	NA	NA	NA	NA	TBC1D9B	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60chr5:179331388-179334856"	NA	inter
CUST_26718_PI429285431	6.76034	P	7.1783032	P	0.74848058525808	0	lncRNA	28214-1_{1..328}	n3286|AJ508600|snoRNA|Homosapiens|5SN3snoRNA|NONCODEv2.0|n3286|NULL|-1.5906100|-0.2433539	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n3286|AJ508600|snoRNA|Homosapiens|5SN3snoRNA|NONCODEv2.0|n3286|NULL|-1.5906100|-0.2433539	chrX	 48420469	 48420796	+	NA	NA	NA	NA	TBC1D25	NA	chrX:48410469-48420997	inner
CUST_23036_PI429285431	3.0242493	P	3.4646268	P	0.736941752980435	0	lncRNA	24607-1_{1..326}	lnc-PSMF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PSMF1-1:1	chr20	  1160505	  1160830	+	lnc-PSMF1-1	lnc-PSMF1-1:1	ENSG00000243473.1	RP4-545L17.7	C20orf46	NA	chr20:1161215-1165117	inter
LNCA_21_P0005018	1.247571	A	0.97176844	A	1.21066738675238	0	lncRNA	TCONS_00012135	NA	NA	NA	NA	XLOC_005667	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005667), lincRNA [TCONS_00012135]"	chr6:28996360-28996301	hs|6p22.1	Agilent_HUMAN_G3V2	TCONS_00012135	TCONS_00012135	chr6	 28996301	 28996360	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22578_PI429285431	3.276364	A	3.0292144	A	1.18685986249351	0	lncRNA	24165-1_{1..494}	lnc-RP11-770G2.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-770G2.3.1-1:1	chr11	 65558233	 65558726	-	lnc-RP11-770G2.3.1-1	lnc-RP11-770G2.3.1-1:1	ENSG00000255120.1	RP11-770G2.4	OVOL1	NA	chr11:65554529-65564685	inner
CUST_5399_PI429285431	4.8768234	P	5.4810467	P	0.657825436567651	0	lncRNA	5333-1_{1..543}	"transcript_id ""ENST00000563734.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563734.1"" | genecode_v17"	chr16	  2318156	  2318698	+	ENSG00000260778.1	ENST00000563734.1	hsa-mir-940	hsa-mir-940.1-002	ABCA3	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40chr16:2325879-2333419"	NA	inner
CUST_34412_PI429285431	10.333739	P	10.605398	P	0.828366433528498	0	lncRNA	35893-1_{1..1207}	n341283|BC006217|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3752|NULL|7.2828200|-0.0440764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341283|BC006217|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3752|NULL|7.2828200|-0.0440764	chr7	100806995	100808201	-	NA	NA	NA	NA	C7orf52	NA	chr7:100813774-100818145	inner
CUST_23787_PI429285431	0.91551137	A	0.9158579	A	0.999759832552341	0	lncRNA	25353-1_{1..3000}	lnc-RPL7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RPL7-1:1	chr8	 74268527	 74271526	-	lnc-RPL7-1	lnc-RPL7-1:1	ENSG00000250295.2	RP11-434I12.2	NA	NA	NA	inter
CUST_22075_PI429285431	1.4141994	A	1.4764333	A	0.9577799235284	0	lncRNA	23681-1_{1..731}	lnc-CTNNA1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTNNA1-2:2	chr5	138386691	138387421	+	lnc-CTNNA1-2	lnc-CTNNA1-2:2	ENSG00000249593.2	CTB-46B19.2	SIL1	"hg19_refFlat_SIL1:range=chr5:138282806-1384635325'pad=0,hg19_refFlat_SIL1:range=chr5:138282806-1384635325'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50chr5:138376691-138396892"	NA	inner
CUST_21507_PI429285431	3.9069145	P	4.2148895	P	0.807774775158526	0	lncRNA	23125-1_{1..807}	lnc-GABARAPL3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GABARAPL3-4:1	chr15	 91157319	 91158125	-	lnc-GABARAPL3-4	lnc-GABARAPL3-4:1	ENSG00000259314.1	CTD-3065B20.3	CRTC3	"hg19_refFlat_CRTC3:range=chr15:91073304-911853725'pad=0,hg19_refFlat_CRTC3:range=chr15:91073304-911853725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50chr15:91147319-91167790"	NA	inner
CUST_942_PI429285431	1.0098716	A	0.92481315	A	1.06073071542208	0	lncRNA	932-1_{1..797}	"transcript_id ""ENST00000438443.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438443.1"" | genecode_v17"	chr2	 77899341	 77900137	+	ENSG00000230968.1	ENST00000438443.1	AC084149.1	AC084149.1-001	NA	NA	NA	inter
CUST_5836_PI429285431	3.6162953	P	2.3187401	A	2.45811975018057	0	lncRNA	5765-1_{1..2296}	"transcript_id ""ENST00000563897.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563897.1"" | genecode_v17"	chr17	 36858705	 36861000	+	ENSG00000261005.1	ENST00000563897.1	CTB-58E17.1	CTB-58E17.1-001	MLLT6	NA	chr17:36861873-36871000	inter
LNCA_21_P0004910	1.0286897	A	1.0045707	A	1.01685854491623	0	lncRNA	TCONS_00011890	NA	NA	NA	NA	XLOC_005389	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005389), lincRNA [TCONS_00011890]"	chr6:93695771-93695830	hs|6q16.1	Agilent_HUMAN_G3V2	TCONS_00011890	TCONS_00011890	chr6	 93695771	 93695830	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47230_PI429285431	4.4686375	P	4.842276	P	0.771833463700465	0	lncRNA	51305-1_{1..658}	"gi|397139936|ref|XR_158949.1| PREDICTED: Homo sapiens uncharacterized LOC100996673 (LOC100996673), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139936|ref|XR_158949.1| PREDICTED: Homo sapiens uncharacterized LOC100996673 (LOC100996673), misc_RNA"	NA	NA	NA	NA	NA	XR_158949.1	NA	NA	NA	NA	NA	Unknown
CUST_1327_PI429285431	1.0576872	A	0.94415164	A	1.08187630513038	0	lncRNA	1316-1_{1..2833}	"transcript_id ""ENST00000432163.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000432163.1"" | genecode_v17"	chr3	 27872379	 27875211	-	ENSG00000229243.1	ENST00000432163.1	AC098973.1	AC098973.1-001	NA	NA	NA	inter
CUST_46960_PI429285431	9.297199	P	9.786119	P	0.712558318602053	0	lncRNA	51065-1_{1..1963}	"gi|379030611|ref|NR_046408.1| Homo sapiens fructosamine 3 kinase related protein (FN3KRP), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379030611|ref|NR_046408.1| Homo sapiens fructosamine 3 kinase related protein (FN3KRP), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_046408.1	NA	NA	NA	NA	NA	Unknown
CUST_40660_PI429285431	1.9935542	A	1.8550317	A	1.10077720500411	0	lncRNA	41395-4_{9001..12000}	n410211|NR_037163|lncRNA|Homosapiens||RefGeneNoncode|NR_037163||7.4038300|-0.3293164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410211|NR_037163|lncRNA|Homosapiens||RefGeneNoncode|NR_037163||7.4038300|-0.3293164	chr1	167199122	167202121	+	NA	NA	NA	NA	POU2F1	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr1:167180122-167396582"	NA	inner
CUST_42629_PI429285431	4.0619807	P	4.362915	P	0.811726545975598	0	lncRNA	45498-1_{1..128}	ENST00000386104 ncrna:snoRNA chromosome:GRCh37:X:113865259:113865386:1 gene:ENSG00000208839 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000386104 ncrna:snoRNA chromosome:GRCh37:X:113865259:113865386:1 gene:ENSG00000208839 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	113865259	113865386	+	ENSG00000208839	ENST00000386104	NA	NA	HTR2C	NA	chrX:113855259-113875386	inner
CUST_35311_PI429285431	6.1317477	P	4.3125873	P	3.52875776911889	0	lncRNA	36714-1_{1..2500}	n342334|AK056155|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4826|NULL|-0.8113670|-0.2288388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342334|AK056155|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4826|NULL|-0.8113670|-0.2288388	chr1	181028570	181031069	+	NA	NA	NA	NA	MR1	NA	chr1:181018570-181031074	inner
CUST_24712_PI429285431	0.97753817	A	0.99896836	A	0.985255504734875	0	lncRNA	26258-1_{1..724}	lnc-SMCR5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMCR5-2:1	chr17	 17674130	 17674853	-	lnc-SMCR5-2	lnc-SMCR5-2:1	ENSG00000237328.1	RAI1-AS1	RAI1	NA	chr17:17664130-17684135	inner
CUST_22174_PI429285431	3.3071709	P	1.1828572	A	4.35995637588475	0	lncRNA	23776-1_{1..265}	lnc-CCNYL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCNYL1-2:1	chr2	208463804	208464068	+	lnc-CCNYL1-2	lnc-CCNYL1-2:1	ENSG00000242128.1	AC079767.2	CREB1	NA	chr2:208453804-208470284	inner
CUST_49323_PI429285431	1.1597478	A	0.93670523	A	1.16719254198222	0	lncRNA	53139-1_{1..2062}	hg19_lincRNAsTranscripts_TCONS_l2_00022336 range=chr5:60475557-60479613 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022336 range=chr5:60475557-60479613 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 60475557	 60477618	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60"	NA	inter
LNCA_21_P0002894	1.0455817	A	1.0179868	A	1.0193114263565	0	lncRNA	ENST00000478814	NA	NA	NA	NA	XLOC_003297	NA	ENST00000478814	NA	NA	"BROAD Institute lincRNA (XLOC_003297), lincRNA [TCONS_00005854]"	chr3:154544913-154544854	hs|3q25.2	Agilent_HUMAN_G3V2	ENST00000478814	ENST00000478814	chr3	154544854	154544913	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28056_PI429285431	2.1968951	A	2.5621033	A	0.776356828344708	0	lncRNA	29674-1_{1..1453}	n325322|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326184|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326184|-1.1565000|-0.2982310	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325322|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326184|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326184|-1.1565000|-0.2982310	chr2	 45001719	 45003171	-	NA	NA	NA	NA	CAMKMT	NA	chr2:44991719-44999729	inter
CUST_5658_PI429285431	0.92098683	A	0.9068188	A	1.00986890969537	0	lncRNA	5584-1_{1..407}	"transcript_id ""ENST00000568131.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568131.1"" | genecode_v17"	chr16	 81772942	 81773348	+	ENSG00000261218.1	ENST00000568131.1	RP11-960L18.1	RP11-960L18.1-004	NA	NA	NA	inter
CUST_13022_PI429285431	3.1477215	A	3.8193676	P	0.627789976641038	0	lncRNA	14650-1_{1..489}	lnc-LPPR3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LPPR3.1-1:1	chr19	   789676	   790164	-	lnc-LPPR3.1-1	lnc-LPPR3.1-1:1	XLOC_013194	linc-PRSSL1	PTBP1	NA	chr19:797392-799792	inter
CUST_41661_PI429285431	4.0233603	P	3.7238948	P	1.23068837462127	0	lncRNA	43080-1_{1..94}	ENST00000584616 ncrna:miRNA chromosome:GRCh37:16:18496035:18496128:-1 gene:ENSG00000266291 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584616 ncrna:miRNA chromosome:GRCh37:16:18496035:18496128:-1 gene:ENSG00000266291 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 18496035	 18496128	-	ENSG00000266291	ENST00000584616	NA	NA	NA	NA	NA	inter
CUST_30694_PI429285431	1.3538035	A	1.4267935	A	0.950665690719413	0	lncRNA	32476-1_{1..350}	n336187|X92879|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324600|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324600|1.3130600|-0.2452977	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336187|X92879|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324600|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324600|1.3130600|-0.2452977	chr14	 22386652	 22387001	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5852_PI429285431	1.2143369	A	1.3987288	A	0.880019928623628	0	lncRNA	5781-1_{1..1985}	"transcript_id ""ENST00000589716.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589716.1"" | genecode_v17"	chr17	 40905932	 40907916	-	ENSG00000197291.4	ENST00000589716.1	RAMP2-AS1	RAMP2-AS1-004	EZH1	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30chr17:40895932-40897071"	NA	inter
CUST_5570_PI429285431	0.9263346	A	0.9144292	A	1.00828633765419	0	lncRNA	5499-1_{1..2296}	"transcript_id ""ENST00000500117.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000500117.1"" | genecode_v17"	chr16	 58783542	 58785837	+	ENSG00000245768.2	ENST00000500117.1	RP11-410D17.2	RP11-410D17.2-001	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_43423_PI429285431	2.8704655	A	4.053026	P	0.440568880726764	0	lncRNA	48234-2_{3001..4846}	"gi|400154070|ref|NR_073091.1| Homo sapiens MYST/Esa1-associated factor 6 (MEAF6), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|400154070|ref|NR_073091.1| Homo sapiens MYST/Esa1-associated factor 6 (MEAF6), transcript variant 5, non-coding RNA"	Chr1	 37958561	 37960406	-	64769	NR_073091.1	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30"	NA	inter
CUST_37851_PI429285431	1.3693098	A	1.4519569	A	0.944323383392348	0	lncRNA	38942-1_{1..772}	n346381|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1931|NULL|-1.4925500|-0.2339673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346381|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1931|NULL|-1.4925500|-0.2339673	chr13	 30946413	 30947184	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8076_PI429285431	6.1915045	P	6.2537045	P	0.957802429407994	0	lncRNA	9681-1_{1..709}	lnc-DDX20-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DDX20-3:2	chr1	112533190	112533898	+	lnc-DDX20-3	lnc-DDX20-3:2	ENSG00000240200	RP11-88H9.2	KCND3	NA	chr1:112523190-112531777	inner
CUST_15451_PI429285431	0.96307683	A	1.887764	A	0.526794734306074	0	lncRNA	17139-1_{1..215}	lnc-CDH6-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH6-2:8	chr5	 29169667	 29169881	+	lnc-CDH6-2	lnc-CDH6-2:8	XLOC_004325	linc-CDH6-3	NA	NA	NA	inter
CUST_12008_PI429285431	1.416584	A	0.97313666	A	1.35984982852338	0	lncRNA	13589-1_{1..307}	lnc-PLXNA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLXNA2-1:1	chr1	208443193	208443499	-	lnc-PLXNA2-1	lnc-PLXNA2-1:1	XLOC_001183	linc-PLXNA2-4	NA	NA	NA	inter
CUST_48878_PI429285431	1.1772327	A	1.4282038	A	0.840330585527909	0	lncRNA	52715-1_{1..479}	hg19_lincRNAsTranscripts_TCONS_l2_00020127 range=chr3:63752743-63768775 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020127 range=chr3:63752743-63768775 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 63752743	 63753221	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39789_PI429285431	1.8790855	A	1.7891431	A	1.06432768802666	0	lncRNA	40700-3_{6001..6454}	n406126|NR_003525|lncRNA|Homosapiens||RefGeneNoncode|NR_003525||11.2118000|-0.2319170	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406126|NR_003525|lncRNA|Homosapiens||RefGeneNoncode|NR_003525||11.2118000|-0.2319170	chr10	 27540781	 27541234	-	NA	NA	NA	NA	ACBD5	NA	chr10:27524781-27531068	inter
CUST_50559_PI429285431	4.0562177	P	3.5265996	P	1.44354701941154	0	lncRNA	54251-1_{1..665}	hg19_lincRNAsTranscripts_TCONS_l2_00030990 range=chrY:14093473-14100009 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030990 range=chrY:14093473-14100009 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrY	 14093473	 14094137	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11837_PI429285431	3.5709379	A	4.1333237	P	0.677181375269354	0	lncRNA	13416-3_{6001..9000}	lnc-FAM174B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-FAM174B-2:1	chr15	 93120431	 93123430	-	lnc-FAM174B-2	lnc-FAM174B-2:1	XLOC_011584	linc-VPS33B-3	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90"	NA	inter
CUST_39240_PI429285431	1.361279	A	1.0288938	A	1.25909330691206	0	lncRNA	40211-1_{1..2235}	n386084|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ayd.2||7.9461700|-0.2751192	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386084|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ayd.2||7.9461700|-0.2751192	chr15	 23190858	 23193092	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18236_PI429285431	12.174494	P	10.969025	P	2.30612225987918	0	lncRNA	19970-1_{1..1676}	lnc-TSC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSC1-1:1	chr9	135895050	135896725	-	lnc-TSC1-1	lnc-TSC1-1:1	ENSG00000248272	AL593851.1	GTF3C5	"hg19_refFlat_EEF1A1:range=chr6:74227533-742297495'pad=0,hg19_refFlat_EEF1A1:range=chr6:74227533-742297495'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80chr9:135906062-135906553"	NA	inter
LNCA_21_P0014178	3.7231357	P	3.6440125	P	1.05637583148827	0	lncRNA	XR_108724	XR_108724	XR_108724	NA	Hs.607679	LOC100505531	uncharacterized LOC100505531	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505531 (LOC100505531), miscRNA [XR_108724]"	chr7:921261-921320	hs|7p22.3	Agilent_HUMAN_G3V2	XR_108724	XR_108724	chr7	   921261	   921320	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5926_PI429285431	10.558046	P	10.797986	P	0.84678052824237	0	lncRNA	5855-1_{1..498}	"transcript_id ""ENST00000582505.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582505.1"" | genecode_v17"	chr17	 61012763	 61013260	-	ENSG00000263931.1	ENST00000582505.1	RP11-180P8.1	RP11-180P8.1-001	NA	NA	NA	inter
CUST_42771_PI429285431	0.90852845	A	0.90349925	A	1.00349205888055	0	lncRNA	45754-1_{1..120}	ENST00000516634 ncrna:snoRNA chromosome:GRCh37:16:69819897:69820016:-1 gene:ENSG00000252443 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516634 ncrna:snoRNA chromosome:GRCh37:16:69819897:69820016:-1 gene:ENSG00000252443 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 69819897	 69820016	-	ENSG00000252443	ENST00000516634	NA	NA	WWP2	NA	chr16:69809897-69830016	inner
CUST_15996_PI429285431	0.92412704	A	0.9143375	A	1.0068086663411	0	lncRNA	17693-1_{1..915}	lnc-PHYHIPL-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHYHIPL-2:5	chr10	 60825037	 60825951	+	lnc-PHYHIPL-2	lnc-PHYHIPL-2:5	XLOC_008489	linc-PHYHIPL	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10"	NA	inter
CUST_28135_PI429285431	3.4298003	P	3.7150397	P	0.820605426710933	0	lncRNA	29761-1_{1..853}	n325412|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323737|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323737|-1.1469800|-0.1531853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325412|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323737|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323737|-1.1469800|-0.1531853	chr2	 16153998	 16154850	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47452_PI429285431	3.8723402	P	2.9737482	A	1.86424568208872	0	lncRNA	51483-2_{3001..5153}	"gi|224177541|ref|NR_027006.1| Homo sapiens chromosome 14 open reading frame 166B pseudogene (LOC400891), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224177541|ref|NR_027006.1| Homo sapiens chromosome 14 open reading frame 166B pseudogene (LOC400891), non-coding RNA"	Chr22	 21403249	 21405401	+	400891	NR_027006.1	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40"	NA	inter
CUST_2328_PI429285431	0.9347194	A	1.4907633	A	0.68016472904588	0	lncRNA	2320-1_{1..581}	"transcript_id ""ENST00000513366.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513366.1"" | genecode_v17"	chr5	117911270	117911850	+	ENSG00000249551.1	ENST00000513366.1	RP11-2N5.2	RP11-2N5.2-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-96.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10"	NA	inter
CUST_7821_PI429285431	0.91541374	A	2.104962	A	0.438440124550135	0	lncRNA	9445-1_{1..368}	lnc-CRYGS-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYGS-1:7	chr3	186173777	186174144	-	lnc-CRYGS-1	lnc-CRYGS-1:7	ENSG00000224406	XLOC_003358	NA	NA	NA	inter
CUST_39648_PI429285431	5.453046	P	6.1136537	P	0.632611768619927	0	lncRNA	40586-1_{1..491}	n405224|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000322483||-0.9741330|-0.4074552	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405224|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000322483||-0.9741330|-0.4074552	chr7	    93608	    94098	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007929	6.24635	P	6.0619593	P	1.13633695749112	0	lncRNA	ENST00000453470	NA	NA	NA	NA	XLOC_010331	NA	ENST00000453470	NA	NA	"BROAD Institute lincRNA (XLOC_010331), lincRNA [TCONS_00021535]"	chr13:30462445-30462504	hs|13q12.3	Agilent_HUMAN_G3V2	ENST00000453470	ENST00000453470	chr13	 30462445	 30462504	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9406_PI429285431	0.91852844	A	0.9081057	A	1.00725065245183	0	lncRNA	10909-1_{1..604}	lnc-MTX2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTX2-1:3	chr2	177520426	177521029	+	lnc-MTX2-1	lnc-MTX2-1:3	XLOC_001765	linc-HNRNPA3-4	NA	NA	NA	inter
CUST_5190_PI429285431	1.0458043	A	0.9806663	A	1.04618500711246	0	lncRNA	5131-1_{1..483}	"transcript_id ""ENST00000569661.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569661.1"" | genecode_v17"	chr15	 55348945	 55349427	+	ENSG00000260937.1	ENST00000569661.1	RP11-548M13.1	RP11-548M13.1-001	NA	NA	NA	inter
CUST_49017_PI429285431	0.91963065	A	1.2480128	A	0.79642910526719	0	lncRNA	52845-1_{1..694}	hg19_lincRNAsTranscripts_TCONS_l2_00021299 range=chr4:135257942-135273960 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021299 range=chr4:135257942-135273960 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	135257942	135258635	-	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10"	NA	inter
CUST_13199_PI429285431	4.1924505	P	3.9737558	P	1.16368025284943	0	lncRNA	14827-1_{1..928}	lnc-C19orf26-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C19orf26-1:2	chr19	  1247770	  1248697	-	lnc-C19orf26-1	lnc-C19orf26-1:2	XLOC_013195	linc-C19orf26-1	MIDN	NA	chr19:1248552-1258181	inter
CUST_30506_PI429285431	7.0208697	P	7.698399	P	0.625235109962758	0	lncRNA	32286-1_{1..494}	n335662|CR612425|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000291620|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000291620|0.8203360|-0.1949507	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335662|CR612425|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000291620|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000291620|0.8203360|-0.1949507	chr19	 48618706	 48619199	-	NA	NA	NA	NA	LIG1	NA	chr19:48618703-48631014	inner
CUST_20323_PI429285431	6.0889745	P	6.211805	P	0.918384055479223	0	lncRNA	21966-1_{1..545}	lnc-PIK3CA-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PIK3CA-1:2	chr3	178174856	178175400	+	lnc-PIK3CA-1	lnc-PIK3CA-1:2	ENSG00000223941.1	KCNMB2-IT1	NA	NA	NA	inter
CUST_11980_PI429285431	0.9074582	A	0.89970875	A	1.00538596184063	0	lncRNA	13560-1_{1..808}	lnc-SLC24A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC24A1-1:1	chr15	 66151957	 66152764	+	lnc-SLC24A1-1	lnc-SLC24A1-1:1	XLOC_011289	linc-RAB11A	RAB11A	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.61;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10chr15:66161797-66162681"	NA	inter
CUST_21620_PI429285431	5.754283	P	5.973507	P	0.859027367735127	0	lncRNA	23233-1_{1..3000}	lnc-C16orf42-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf42-1:3	chr16	  1372379	  1375378	-	lnc-C16orf42-1	lnc-C16orf42-1:3	ENSG00000261505.1	LA16c-358B7.3	UBE2I	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_UBE2I:range=chr16:1364032-13747945'pad=0,hg19_refFlat_UBE2I:range=chr16:1364032-13747945'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10chr16:1362379-1375390"	NA	inner
CUST_33818_PI429285431	0.91311824	A	1.0729582	A	0.895124362707228	0	lncRNA	35366-1_{1..2193}	n340604|AK026718|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3066|NULL|-1.3005000|-0.4995928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340604|AK026718|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3066|NULL|-1.3005000|-0.4995928	chr5	122168050	122170242	+	NA	NA	NA	NA	SNX2	NA	chr5:122158050-122165803	inter
CUST_28724_PI429285431	0.92446023	A	1.4317046	A	0.703565004649464	0	lncRNA	30424-1_{1..415}	n326114|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046449|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046449|-1.3842200|-0.3171512	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326114|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046449|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046449|-1.3842200|-0.3171512	chr10	  3016555	  3016969	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001634	6.7347503	P	7.05892	P	0.798757955359919	0	lncRNA	TCONS_00001843	NA	NA	NA	NA	XLOC_001228	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001228), lincRNA [TCONS_00001843]"	chr1:224802983-224802924	hs|1q42.12	Agilent_HUMAN_G3V2	TCONS_00001843	TCONS_00001843	chr1	224802924	224802983	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29144_PI429285431	1.3672116	M	1.5718694	A	0.867744487367188	0	lncRNA	30887-1_{1..1747}	n326654|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000102020|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000102020|-1.1826000|-0.2446884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326654|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000102020|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000102020|-1.1826000|-0.2446884	chr1	 31103591	 31105337	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010826	1.9548991	A	0.9178313	A	2.0520527254035	0	lncRNA	ENST00000427229	NA	BC043208	NA	Hs.666134	XLOC_l2_001583	NA	ENST00000427229	THC2506408	NA	"BROAD Institute lincRNA (XLOC_l2_001583), lincRNA [TCONS_l2_00003966]"	chr10:45644337-45645111	hs|10q11.21	Agilent_HUMAN_G3V2	ENST00000427229	ENST00000427229	chr10	 45644337	 45645111	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23718_PI429285431	1.9889029	A	2.7054853	A	0.608537299975594	0	lncRNA	25282-1_{1..560}	lnc-CDIPT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDIPT-1:1	chr16	 29832199	 29832758	-	lnc-CDIPT-1	lnc-CDIPT-1:1	ENSG00000261690.1	AC009133.12	MAZ	"hg19_refFlat_PAGR1:range=chr16:29827847-298310755'pad=0,hg19_refFlat_PAGR1:range=chr16:29827847-298310755'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.00chr16:29822199-29822504"	NA	inner
CUST_2648_PI429285431	0.92740023	A	0.9702975	A	0.970703588208634	0	lncRNA	2635-1_{1..876}	"transcript_id ""ENST00000418834.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418834.1"" | genecode_v17"	chr6	140404232	140405107	+	ENSG00000236013.1	ENST00000418834.1	RP3-332B22.1	RP3-332B22.1-002	NA	NA	NA	inter
LNCA_21_P0007285	2.914938	A	3.075901	P	0.894427840383481	0	lncRNA	TCONS_00019502	NA	NA	NA	NA	XLOC_009303	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009303), lincRNA [TCONS_00019502]"	chr11:119821756-119821815	hs|11q23.3	Agilent_HUMAN_G3V2	TCONS_00019502	TCONS_00019502	chr11	119821756	119821815	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12246_PI429285431	4.741829	P	4.9418435	P	0.8705418137549	0	lncRNA	13851-1_{1..794}	lnc-PIEZO2-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIEZO2-3:3	chr18	 11368532	 11369325	-	lnc-PIEZO2-3	lnc-PIEZO2-3:3	XLOC_012768	linc-FAM38B-1	NA	NA	NA	inter
CUST_17186_PI429285431	0.96123743	A	0.92111623	A	1.02820020154924	0	lncRNA	18897-1_{1..681}	lnc-PPP1R3B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP1R3B-2:2	chr8	  9117538	  9118218	-	lnc-PPP1R3B-2	lnc-PPP1R3B-2:2	XLOC_006999	linc-PPP1R3B-6	NA	NA	NA	inter
CUST_4678_PI429285431	0.91339964	A	0.911894	A	1.00104417489235	0	lncRNA	4624-1_{1..692}	"transcript_id ""ENST00000453862.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453862.1"" | genecode_v17"	chr13	 97824723	 97825414	-	ENSG00000233124.1	ENST00000453862.1	RP11-199B17.1	RP11-199B17.1-001	NA	NA	NA	inter
CUST_43548_PI429285431	1.7326039	A	1.0004809	A	1.66108166115557	0	lncRNA	48326-1_{1..3000}	"gi|215277002|ref|NR_024537.1| Homo sapiens glutathione S-transferase mu 3 (brain) (GSTM3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|215277002|ref|NR_024537.1| Homo sapiens glutathione S-transferase mu 3 (brain) (GSTM3), transcript variant 2, non-coding RNA"	Chr1	110276554	110279553	-	2947	NR_024537.1	NA	NA	NA	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.24;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-55.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.91;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80"	NA	inter
LNCA_21_P0002800	2.037376	A	1.7964982	A	1.18171144868016	0	lncRNA	ENST00000496891	NA	NA	NA	NA	XLOC_002909	NA	ENST00000496891	NA	NA	"BROAD Institute lincRNA (XLOC_002909), lincRNA [TCONS_00005651]"	chr3:167633680-167639772	hs|3q26.2	Agilent_HUMAN_G3V2	ENST00000496891	ENST00000496891	chr3	167633680	167639772	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51614_PI429285431	4.5821013	P	4.8225994	P	0.846453018407022	0	lncRNA	55183-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00010770 range=chr17:39268297-39272543 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010770 range=chr17:39268297-39272543 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 39268297	 39271296	+	NA	NA	NA	NA	KRTAP4-12	NA	chr17:39279343-39280419	inter
CUST_31616_PI429285431	1.6905922	A	2.7623456	A	0.475740449576529	0	lncRNA	33372-1_{1..1408}	n338134|BC026116|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|522|NULL|-1.0620900|-0.2208479	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338134|BC026116|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|522|NULL|-1.0620900|-0.2208479	chr15	 91838736	 91840143	-	NA	NA	NA	NA	SV2B	NA	chr15:91828736-91844539	inner
CUST_48741_PI429285431	7.227833	P	4.791184	P	5.41382780057233	0	lncRNA	52579-1_{1..661}	hg19_lincRNAsTranscripts_TCONS_l2_00013992 range=chr2:132218684-132220150 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013992 range=chr2:132218684-132220150 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	132218684	132219344	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37958_PI429285431	0.90135574	A	0.8947448	A	1.00459286946295	0	lncRNA	39047-2_{3001..6000}	n346506|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2056|NULL|-1.3176700|-0.3550158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346506|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2056|NULL|-1.3176700|-0.3550158	chr2	 56186726	 56189725	-	NA	NA	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50"	NA	inter
CUST_46676_PI429285431	0.90544873	A	0.89419806	A	1.00782885667549	0	lncRNA	50844-1_{1..1308}	"gi|397139903|ref|XR_109294.2| PREDICTED: Homo sapiens chromosome 16 open reading frame 47 (C16orf47), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139903|ref|XR_109294.2| PREDICTED: Homo sapiens chromosome 16 open reading frame 47 (C16orf47), misc_RNA"	NA	NA	NA	NA	NA	XR_109294.2	NA	NA	NA	NA	NA	Unknown
CUST_4658_PI429285431	0.9014232	A	0.896186	A	1.0036367473903	0	lncRNA	4604-1_{1..348}	"transcript_id ""ENST00000450187.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450187.2"" | genecode_v17"	chr13	 80140881	 80141228	+	ENSG00000227676.2	ENST00000450187.2	RP11-25J23.3	RP11-25J23.3-001	NA	NA	NA	inter
CUST_22560_PI429285431	2.8637116	A	2.6231198	A	1.1814772093105	0	lncRNA	24147-1_{1..718}	lnc-AEBP2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AEBP2-4:1	chr12	 20162655	 20163372	+	lnc-AEBP2-4	lnc-AEBP2-4:1	ENSG00000255910.1	RP11-405A12.2	NA	NA	NA	inter
CUST_19531_PI429285431	1.721944	A	1.4285675	A	1.22550511013918	0	lncRNA	21187-1_{1..794}	lnc-CCDC64B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC64B-1:1	chr16	  3108997	  3109790	-	lnc-CCDC64B-1	lnc-CCDC64B-1:1	ENSG00000261971.1	RP11-473M20.7	IL32	"hg19_refFlat_MMP25:range=chr16:3096919-31090995'pad=0,hg19_refFlat_MMP25:range=chr16:3096919-31090995'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.80chr16:3115313-3119371"	NA	inner
CUST_3420_PI429285431	0.9208303	A	1.083119	A	0.893606323480373	0	lncRNA	3392-1_{1..507}	"transcript_id ""ENST00000446288.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446288.2"" | genecode_v17"	chr9	 66720898	 66721404	+	ENSG00000230857.2	ENST00000446288.2	RP11-318K12.2	RP11-318K12.2-002	LOC100132004	"hg19_refFlat_ANKRD30B:range=chr18:14748419-148524795'pad=0,hg19_refFlat_ANKRD30B:range=chr18:14748419-148524795'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30chr9:66710898-66720920"	NA	inter
CUST_42855_PI429285431	2.7131705	A	0.9298571	A	3.44215818926537	0	lncRNA	45900-1_{1..69}	ENST00000365321 ncrna:snoRNA chromosome:GRCh37:14:101391161:101391229:1 gene:ENSG00000202191 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365321 ncrna:snoRNA chromosome:GRCh37:14:101391161:101391229:1 gene:ENSG00000202191 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101391161	101391229	+	ENSG00000202191	ENST00000365321	NA	NA	NA	NA	NA	inter
CUST_3024_PI429285431	0.9099252	A	0.9265328	A	0.98855449281711	0	lncRNA	3003-1_{1..179}	"transcript_id ""ENST00000519185.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519185.1"" | genecode_v17"	chr8	 19103860	 19104038	+	ENSG00000254201.1	ENST00000519185.1	RP11-618M23.2	RP11-618M23.2-001	SH2D4A	NA	chr8:19095947-19116750	inter
CUST_4366_PI429285431	0.91304874	A	0.9136797	A	0.999562747477713	0	lncRNA	4320-1_{1..400}	"transcript_id ""ENST00000547094.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547094.1"" | genecode_v17"	chr12	 90341470	 90341869	+	ENSG00000257725.1	ENST00000547094.1	RP11-654D12.3	RP11-654D12.3-001	NA	NA	NA	inter
CUST_33709_PI429285431	0.90007675	A	1.7956171	A	0.537545823989559	0	lncRNA	35269-1_{1..1673}	n340487|BC028670|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2948|NULL|-1.1635300|-0.3166118	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n340487|BC028670|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2948|NULL|-1.1635300|-0.3166118	chr5	 65500950	 65502622	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39225_PI429285431	2.846267	A	3.4071105	P	0.677905696949685	0	lncRNA	40198-1_{1..553}	n386044|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zns.1||-0.9957190|-0.2492948	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386044|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zns.1||-0.9957190|-0.2492948	chr12	 55001970	 55002522	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43300_PI429285431	3.7201707	P	2.7381668	A	1.97520706240943	0	lncRNA	48118-1_{1..2538}	ENST00000568966 havana:sense_overlapping chromosome:GRCh37:3:124442635:124445172:1 gene:ENSG00000260391 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>ENST00000568966 havana:sense_overlapping chromosome:GRCh37:3:124442635:124445172:1 gene:ENSG00000260391 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	chr3	124442635	124445172	+	ENSG00000260391	ENST00000568966	NA	NA	KALRN	NA	chr3:124432635-124440036	inter
CUST_30978_PI429285431	12.481474	P	12.009536	P	1.38697136258265	0	lncRNA	32766-1_{1..207}	n337130|AB252974|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383681|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383681|-0.7075430|-0.0686963	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337130|AB252974|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383681|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383681|-0.7075430|-0.0686963	chr5	150443174	150443380	-	NA	NA	NA	NA	TNIP1	NA	chr5:150433174-150460997	inner
CUST_42261_PI429285431	17.435583	P	17.482544	P	0.967973193507766	0	lncRNA	44720-1_{1..152}	ENST00000515896 ncrna:rRNA chromosome:GRCh37:Y:10037764:10037915:1 gene:ENSG00000251705 gene_biotype:rRNA transcript_biotype:rRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515896 ncrna:rRNA chromosome:GRCh37:Y:10037764:10037915:1 gene:ENSG00000251705 gene_biotype:rRNA transcript_biotype:rRNA	chrY	 10037764	 10037915	+	ENSG00000251705	ENST00000515896	NA	NA	NA	NA	NA	inter
CUST_50861_PI429285431	0.90913224	A	0.89474595	A	1.01002170058716	0	lncRNA	54505-1_{1..403}	hg19_lincRNAsTranscripts_TCONS_l2_00005177 range=chr11:104772326-104774462 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005177 range=chr11:104772326-104774462 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	104772326	104772728	-	NA	NA	NA	NA	CASP12	NA	chr11:104762326-104769397	inter
CUST_52049_PI429285431	9.338161	P	9.299496	P	1.02716290003728	0	lncRNA	55582-1_{1..632}	hg19_lincRNAsTranscripts_TCONS_l2_00017237 range=chr21:40360401-40361111 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017237 range=chr21:40360401-40361111 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 40360401	 40361032	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34928_PI429285431	3.575598	P	2.571307	A	2.0059574443088	0	lncRNA	36348-1_{1..2513}	n341846|AK023682|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4326|NULL|-1.2127500|-0.3742096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341846|AK023682|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4326|NULL|-1.2127500|-0.3742096	chr6	 41757633	 41760145	-	NA	NA	NA	NA	USP49	"hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-14.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80chr6:41765383-41770146"	NA	inner
CUST_6622_PI429285431	6.8306518	P	7.1472573	P	0.80295692450996	0	lncRNA	6569-1_{1..3000}	"transcript_id ""ENST00000595059.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595059.1"" | genecode_v17"	chr19	 58951815	 58954814	+	ENSG00000269473.1	ENST00000595059.1	CTD-2619J13.19	CTD-2619J13.19-001	ZNF324B	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50chr19:58956295-58967216"	NA	inter
CUST_27913_PI429285431	0.930303	A	0.91815877	A	1.0084532675684	0	lncRNA	29515-1_{1..778}	n325158|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331097|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331097|-0.8457570|-0.3324352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325158|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331097|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331097|-0.8457570|-0.3324352	chr2	118606173	118606950	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28125_PI429285431	0.9181264	A	1.3142447	A	0.759900114359791	0	lncRNA	29748-1_{1..368}	n325399|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323820|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323820|-1.1247600|-0.2515830	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325399|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323820|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323820|-1.1247600|-0.2515830	chr2	 18829553	 18829920	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7762_PI429285431	4.8281255	P	4.3600245	P	1.38328746662377	0	lncRNA	9389-1_{1..554}	lnc-SHANK2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHANK2-1:2	chr11	 70244204	 70244757	-	lnc-SHANK2-1	lnc-SHANK2-1:2	ENSG00000246889	ENSG00000246889.2	CTTN	"hg19_refFlat_PPFIA1:range=chr11:70118279-702282525'pad=0,hg19_refFlat_PPFIA1:range=chr11:70118279-702282525'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10;hg19_refFlat_PPFIA1:range=chr11:70118279-702243095'pad=0,hg19_refFlat_PPFIA1:range=chr11:70118279-702243095'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10chr11:70244612-70254468"	NA	inter
CUST_2283_PI429285431	1.2062933	A	1.4494177	A	0.84491352648245	0	lncRNA	2275-1_{1..519}	"transcript_id ""ENST00000508339.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508339.1"" | genecode_v17"	chr5	101945261	101945779	-	ENSG00000250682.1	ENST00000508339.1	LINC00491	LINC00491-002	NA	NA	NA	inter
CUST_17321_PI429285431	1.0792497	A	1.3527864	A	0.827288997315185	0	lncRNA	19039-1_{1..297}	lnc-EBF3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EBF3-5:1	chr10	132281145	132281441	-	lnc-EBF3-5	lnc-EBF3-5:1	XLOC_008996	linc-EBF3-3	NA	NA	NA	inter
CUST_30028_PI429285431	4.045025	P	4.0699067	P	0.982901192461898	0	lncRNA	31796-1_{1..331}	n334495|U29111|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218957|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218957|-1.4114000|-0.3425662	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334495|U29111|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218957|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218957|-1.4114000|-0.3425662	chr1	100924261	100924591	-	NA	NA	NA	NA	CDC14A	NA	chr1:100914261-100934592	inner
CUST_44248_PI429285431	0.9224059	A	0.9058354	A	1.01155201037081	0	lncRNA	48894-1_{1..643}	"gi|397139045|ref|XR_108489.2| PREDICTED: Homo sapiens uncharacterized LOC100507210 (LOC100507210), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139045|ref|XR_108489.2| PREDICTED: Homo sapiens uncharacterized LOC100507210 (LOC100507210), misc_RNA"	Chr3	133774097	133774739	-	100507210	XR_108489.2	NA	NA	NA	NA	NA	inter
CUST_36574_PI429285431	2.9809856	A	2.5230906	A	1.37353626319896	0	lncRNA	37769-1_{1..2553}	n345071|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_620|NULL|-1.2779200|-0.3670181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345071|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_620|NULL|-1.2779200|-0.3670181	chrX	 79503435	 79505987	-	NA	NA	NA	NA	FAM46D	NA	chrX:79591003-79600863	inter
CUST_33210_PI429285431	0.9028977	A	0.89872277	A	1.0028980321582	0	lncRNA	34801-1_{1..3000}	n339908|BC053410|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2357|NULL|-0.8584170|-0.3876165	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n339908|BC053410|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2357|NULL|-0.8584170|-0.3876165	chr18	 65183782	 65186781	+	NA	NA	NA	NA	DSEL	NA	chr18:65173819-65183967	inter
LNCA_21_P0005954	0.92509073	A	0.9152758	A	1.00682638532969	0	lncRNA	ENST00000519500	NA	NA	NA	NA	XLOC_006935	NA	ENST00000519500	NA	NA	"BROAD Institute lincRNA (XLOC_006935), lincRNA [TCONS_00015372]"	chr8:135850485-135850544	hs|8q24.22	Agilent_HUMAN_G3V2	ENST00000519500	ENST00000519500	chr8	135850485	135850544	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6921_PI429285431	5.204673	P	5.52582	P	0.800433248247829	0	lncRNA	6873-1_{1..2726}	"transcript_id ""ENST00000441006.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000441006.1"" | genecode_v17"	chr22	 17517460	 17520185	+	ENSG00000237438.1	ENST00000441006.1	CECR7	CECR7-001	NA	NA	NA	inter
CUST_45377_PI429285431	7.4061613	P	7.8134966	P	0.754014775707202	0	lncRNA	49811-1_{1..438}	"gi|397139334|ref|XR_158848.1| PREDICTED: Homo sapiens uncharacterized LOC100653206 (LOC100653206), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139334|ref|XR_158848.1| PREDICTED: Homo sapiens uncharacterized LOC100653206 (LOC100653206), misc_RNA"	NA	NA	NA	NA	NA	XR_158848.1	NA	NA	NA	NA	NA	Unknown
CUST_17852_PI429285431	0.98272055	A	0.91735125	A	1.04635275011029	0	lncRNA	19587-1_{1..403}	lnc-AMY1C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AMY1C-2:1	chr1	104672444	104672846	+	lnc-AMY1C-2	lnc-AMY1C-2:1	XLOC_000326	linc-PRMT6-5	NA	NA	NA	inter
LNCA_21_P0005304	0.9274294	A	1.5252393	A	0.660756263148049	0	lncRNA	ENST00000456513	NA	NA	NA	NA	XLOC_006437	NA	ENST00000456513	THC2692044	NA	"BROAD Institute lincRNA (XLOC_006437), lincRNA [TCONS_00013167]"	chr7:48700233-48700174	hs|7p12.3	Agilent_HUMAN_G3V2	ENST00000456513	ENST00000456513	chr7	 48700174	 48700233	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41013_PI429285431	7.0638056	P	6.7249565	P	1.26474724804658	0	lncRNA	41673-1_{1..2893}	n411618|NR_040087|lncRNA|Homosapiens||RefGeneNoncode|NR_040087||7.6292400|-0.2156072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411618|NR_040087|lncRNA|Homosapiens||RefGeneNoncode|NR_040087||7.6292400|-0.2156072	chr21	 37406839	 37409731	-	NA	NA	NA	NA	SETD4	NA	chr21:37396839-37432819	inter
CUST_29437_PI429285431	2.3065662	A	1.2799987	A	2.03717158584422	0	lncRNA	31193-1_{1..988}	n332824|AF061556|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064967|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064967|2.6364700|-0.2561845	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332824|AF061556|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064967|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064967|2.6364700|-0.2561845	chr15	 43307993	 43308980	-	NA	NA	NA	NA	UBR1	NA	chr15:43297993-43338462	inner
CUST_13672_PI429285431	0.90678704	A	0.9037251	A	1.00212462891024	0	lncRNA	15309-1_{1..210}	lnc-ZNF438-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF438-1:1	chr10	 31124496	 31124705	-	lnc-ZNF438-1	lnc-ZNF438-1:1	XLOC_008770	linc-LYZL2-4	ZNF438	NA	chr10:31133563-31134561	inter
CUST_32129_PI429285431	2.897102	A	1.7494106	A	2.21559071861865	0	lncRNA	33829-1_{1..204}	n338696|AF024707|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1116|NULL|-0.6470520|-0.1109370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338696|AF024707|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1116|NULL|-0.6470520|-0.1109370	chr19	 44635343	 44635546	+	NA	NA	NA	NA	ZNF226	NA	chr19:44669215-44681838	inner
CUST_6137_PI429285431	10.127853	P	10.240686	P	0.924770319242164	0	lncRNA	6063-1_{1..429}	"transcript_id ""ENST00000582726.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582726.1"" | genecode_v17"	chr18	 26365032	 26365460	+	ENSG00000265994.1	ENST00000582726.1	RP11-510D21.1	RP11-510D21.1-001	NA	NA	NA	inter
CUST_32472_PI429285431	0.94056165	A	2.032861	A	0.46901327089727	0	lncRNA	34141-1_{1..1084}	n339074|BC042827|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1504|NULL|-1.1339000|-0.3305361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339074|BC042827|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1504|NULL|-1.1339000|-0.3305361	chr2	198115584	198116667	-	NA	NA	NA	NA	ANKRD44	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70chr2:198105584-198175521"	NA	inner
CUST_36479_PI429285431	0.9189645	A	0.91542023	A	1.00245972091965	0	lncRNA	37684-1_{1..3000}	n344984|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_533|NULL|-1.4505600|-0.3700846	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344984|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_533|NULL|-1.4505600|-0.3700846	chr8	130310352	130313351	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70"	NA	inter
CUST_11241_PI429285431	2.829713	A	2.7590394	A	1.05020691491596	0	lncRNA	12799-1_{1..1593}	lnc-ZNF479-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF479-2:1	chr7	 57471760	 57473352	-	lnc-ZNF479-2	lnc-ZNF479-2:1	XLOC_006460	linc-ZNF479-11	NA	NA	NA	inter
CUST_1814_PI429285431	0.8966399	A	0.8992664	A	0.998181105128141	0	lncRNA	1801-1_{1..910}	"transcript_id ""ENST00000426551.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000426551.1"" | genecode_v17"	chr4	 83534266	 83535175	-	ENSG00000231782.2	ENST00000426551.1	LINC00575	LINC00575-001	SCD5	NA	chr4:83550690-83552590	inter
CUST_21088_PI429285431	7.8555617	P	8.105868	P	0.840717902661295	0	lncRNA	22713-1_{1..2298}	lnc-SCN8A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SCN8A-2:1	chr12	 52216024	 52218321	+	lnc-SCN8A-2	lnc-SCN8A-2:1	ENSG00000261586.1	RP11-923I11.6	FIGNL2	"hg19_refFlat_FIGNL2:range=chr12:52214236-522161975'pad=0,hg19_refFlat_FIGNL2:range=chr12:52214236-522161975'pad=0 3'pad=0 strand=- repeatMasking=none,-99.70chr12:52211676-52225701"	NA	inner
CUST_723_PI429285431	1.0710224	A	1.6076458	A	0.689382508880139	0	lncRNA	716-1_{1..424}	"transcript_id ""ENST00000412528.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412528.1"" | genecode_v17"	chr2	  6868309	  6868732	-	ENSG00000205837.3	ENST00000412528.1	LINC00487	LINC00487-003	NA	NA	NA	inter
CUST_339_PI429201921	0.9517064	A	1.581334	A	0.64634323308021	0	lncRNA	223-3_{6001..8035}	TC15002461.hg.1	TCONS_l2_00008970-XLOC_l2_004860 // Broad TUCP // linc-CHRFAM7A-2 chr15:-:30704540-30712576 // chr15 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr15:-:30704540-30712576	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00008970-XLOC_l2_004860	linc-CHRFAM7A-2	chr15	 30704540	 30712576	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27836_PI429285431	1.265283	A	1.2033169	A	1.04388739819166	0	lncRNA	29424-1_{1..268}	n325066|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078010|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078010|-1.1666200|-0.4326032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325066|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078010|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078010|-1.1666200|-0.4326032	chr20	 10793302	 10793569	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18503_PI429285431	0.9470873	A	0.9192998	A	1.01944751366537	0	lncRNA	20218-1_{1..2540}	lnc-RP11-262H14.4.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-262H14.4.1-2:1	chr9	 66697382	 66699921	+	lnc-RP11-262H14.4.1-2	lnc-RP11-262H14.4.1-2:1	ENSG00000256208	AL353626.2	LOC100132004	"hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-29.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00chr9:66687382-66707441"	NA	inter
CUST_817_PI429285431	1.2666898	A	0.9146072	A	1.2764018457935	0	lncRNA	810-1_{1..572}	"transcript_id ""ENST00000430051.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430051.1"" | genecode_v17"	chr2	 23598235	 23598806	-	ENSG00000235497.1	ENST00000430051.1	AC012506.4	AC012506.4-001	KLHL29	NA	chr2:23608298-23614126	inter
CUST_9920_PI429285431	0.91977173	A	1.1195406	A	0.870690042856611	0	lncRNA	11444-1_{1..451}	lnc-GNAQ-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNAQ-1:1	chr9	 81496782	 81497232	-	lnc-GNAQ-1	lnc-GNAQ-1:1	XLOC_007744	linc-GNAQ-4	NA	NA	NA	inter
CUST_16553_PI429285431	2.924224	A	1.620421	A	2.46878807777103	0	lncRNA	18254-1_{1..771}	lnc-PABPC3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PABPC3-2:1	chr13	 25763397	 25764167	+	lnc-PABPC3-2	lnc-PABPC3-2:1	XLOC_010320	linc-NUPL1-1	NA	NA	NA	inter
CUST_18428_PI429285431	0.92432845	A	1.030163	A	0.929267237623271	0	lncRNA	20151-2_{3001..4717}	lnc-LRRC9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-LRRC9-1:1	chr14	 60533041	 60534757	+	lnc-LRRC9-1	lnc-LRRC9-1:1	ENSG00000131951	LRRC9	NA	NA	NA	inter
CUST_5773_PI429285431	3.3138254	P	3.4558127	P	0.906269916098372	0	lncRNA	5696-1_{1..620}	"transcript_id ""ENST00000428134.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428134.1"" | genecode_v17"	chr17	 20516225	 20516844	-	ENSG00000227685.1	ENST00000428134.1	AC087499.10	AC087499.10-001	NA	"hg19_refFlat_DEF8:range=chr16:90021633-900323715'pad=0,hg19_refFlat_DEF8:range=chr16:90021633-900323715'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_DEF8:range=chr16:90020661-900256435'pad=0,hg19_refFlat_DEF8:range=chr16:90020661-900256435'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_DEF8:range=chr16:90020661-900323715'pad=0,hg19_refFlat_DEF8:range=chr16:90020661-900323715'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_DEF8:range=chr16:90015874-900323715'pad=0,hg19_refFlat_DEF8:range=chr16:90015874-900323715'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80"	NA	inter
CUST_12323_PI429285431	1.173553	A	1.2753122	A	0.931895958931107	0	lncRNA	13936-1_{1..827}	lnc-KY-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KY-2:3	chr3	135158598	135159424	-	lnc-KY-2	lnc-KY-2:3	XLOC_003263	linc-KY-1	NA	NA	NA	inter
CUST_37140_PI429285431	0.91491663	A	0.90819806	A	1.00466781833351	0	lncRNA	38261-2_{3001..3400}	n345579|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1128|NULL|-1.5442700|-0.2708368	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345579|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1128|NULL|-1.5442700|-0.2708368	chr3	 72172618	 72173017	-	NA	NA	NA	NA	RYBP	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.40chr3:72423744-72432258"	NA	inter
CUST_40839_PI429285431	4.519481	P	4.602148	P	0.944310357835877	0	lncRNA	41542-1_{1..1316}	n410611|NR_037860_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037860_3||0.2160990|-0.2573363	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410611|NR_037860_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037860_3||0.2160990|-0.2573363	chr6	  3447121	  3448436	+	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10chr6:3437121-3456793"	NA	inner
CUST_36489_PI429285431	0.92636657	A	1.1376467	A	0.86377045166756	0	lncRNA	37691-1_{1..915}	n344991|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_540|NULL|-1.4209000|-0.1694033	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344991|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_540|NULL|-1.4209000|-0.1694033	chr8	  8978040	  8978954	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2069_PI429285431	0.91841465	A	1.0716026	A	0.899261151459898	0	lncRNA	2060-1_{1..568}	"transcript_id ""ENST00000512838.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512838.1"" | genecode_v17"	chr5	  6933783	  6934350	+	ENSG00000250974.1	ENST00000512838.1	RP11-122F24.1	RP11-122F24.1-001	NA	NA	NA	inter
CUST_3831_PI429285431	0.9651848	A	1.386714	A	0.746632803336698	0	lncRNA	3798-1_{1..1168}	"transcript_id ""ENST00000456514.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456514.1"" | genecode_v17"	chr10	128102438	128103605	-	ENSG00000235180.1	ENST00000456514.1	LINC00601	LINC00601-001	C10orf90	NA	chr10:128113571-128120448	inter
CUST_49767_PI429285431	11.237145	P	10.896705	P	1.26614268931421	0	lncRNA	53529-2_{3001..5445}	hg19_lincRNAsTranscripts_TCONS_l2_00026563 range=chr7:51455484-51463804 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026563 range=chr7:51455484-51463804 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 51458484	 51460928	-	NA	NA	NA	NA	LOC100131871	NA	chr7:51459730-51460910	inter
CUST_32106_PI429285431	2.093314	A	2.957798	A	0.549242816119651	0	lncRNA	33809-2_{3001..3774}	n338671|AF305819|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1085|NULL|-1.0504700|-0.3534638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338671|AF305819|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1085|NULL|-1.0504700|-0.3534638	chr13	 43500346	 43501119	+	NA	NA	NA	NA	EPSTI1	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_EPSTI1:range=chr13:43462386-435663015'pad=0,hg19_refFlat_EPSTI1:range=chr13:43462386-435663015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_EPSTI1:range=chr13:43462630-435663015'pad=0,hg19_refFlat_EPSTI1:range=chr13:43462630-435663015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70chr13:43487346-43511079"	NA	inner
CUST_50293_PI429285431	5.689226	P	5.5609527	P	1.09298477138269	0	lncRNA	54012-1_{1..496}	hg19_lincRNAsTranscripts_TCONS_l2_00029435 range=chr9:88371000-88380137 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029435 range=chr9:88371000-88380137 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 88371000	 88371495	-	NA	NA	NA	NA	NA	"hg19_refFlat_KIF27:range=chr9:86451916-865305065'pad=0,hg19_refFlat_KIF27:range=chr9:86451916-865305065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90"	NA	inter
CUST_47330_PI429285431	2.9058197	A	3.3162405	P	0.752403883290961	0	lncRNA	51386-1_{1..1440}	"gi|213417942|ref|NR_024470.1| Homo sapiens uncharacterized LOC100127888 (LOC100127888), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|213417942|ref|NR_024470.1| Homo sapiens uncharacterized LOC100127888 (LOC100127888), non-coding RNA"	Chr20	 61294379	 61295818	-	100127888	NR_024470.1	NA	NA	NA	"hg19_refFlat_SLCO4A1:range=chr20:61287807-613032455'pad=0,hg19_refFlat_SLCO4A1:range=chr20:61287807-613032455'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90"	NA	inter
CUST_33157_PI429285431	2.3353271	A	1.2882607	A	2.06632387567991	0	lncRNA	34752-1_{1..1530}	n339849|AF131843|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2297|NULL|-1.0402000|-0.4237647	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339849|AF131843|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2297|NULL|-1.0402000|-0.4237647	chr18	 39661837	 39663366	+	NA	NA	NA	NA	PIK3C3	NA	chr18:39651837-39661448	inter
CUST_48749_PI429285431	1.0179455	A	1.0448152	A	0.981547710371024	0	lncRNA	52586-1_{1..420}	hg19_lincRNAsTranscripts_TCONS_l2_00014917 range=chr2:132908497-132914805 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014917 range=chr2:132908497-132914805 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	132908497	132908916	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011455	3.1706364	P	3.6387384	P	0.722915034641197	0	lncRNA	TCONS_l2_00010003	NA	NA	NA	NA	XLOC_l2_005393	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005393), lincRNA [TCONS_l2_00010003]"	chr16:11565209-11565150	hs|16p13.13	Agilent_HUMAN_G3V2	TCONS_l2_00010003	TCONS_l2_00010003	chr16	 11565150	 11565209	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18497_PI429285431	0.99610525	A	0.98785394	A	1.00573575909787	0	lncRNA	20214-1_{1..3000}	lnc-SHROOM4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHROOM4-1:2	chrX	 50213033	 50216032	-	lnc-SHROOM4-1	lnc-SHROOM4-1:2	ENSG00000204466	DGKK	DGKK	NA	chrX:50203033-50213721	inner
CUST_2789_PI429285431	0.9118918	A	0.90439093	A	1.00521274622282	0	lncRNA	2773-1_{1..757}	"transcript_id ""ENST00000523608.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523608.2"" | genecode_v17"	chr7	 27278862	 27279618	-	ENSG00000253308.2	ENST00000523608.2	RP1-170O19.17	RP1-170O19.17-001	EVX1	NA	chr7:27282164-27286192	inter
CUST_9909_PI429285431	2.0178678	A	0.92549163	A	2.13224936486527	0	lncRNA	11433-1_{1..873}	lnc-C11orf46-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C11orf46-3:1	chr11	 30813899	 30814771	+	lnc-C11orf46-3	lnc-C11orf46-3:1	XLOC_009100	linc-DNAJC24-1	NA	NA	NA	inter
CUST_30701_PI429285431	0.96906734	A	1.5983874	A	0.646481029066474	0	lncRNA	32483-1_{1..360}	n336202|X93719|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324669|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324669|2.1380100|-0.0611945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336202|X93719|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324669|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324669|2.1380100|-0.0611945	chr2	 89161035	 89161394	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011834	2.1553252	A	1.7754358	A	1.30124209569483	0	lncRNA	TCONS_l2_00015425	NA	NA	NA	NA	XLOC_l2_007468	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007468), lincRNA [TCONS_l2_00015425]"	chr2:105282219-105282278	hs|2q12.1	Agilent_HUMAN_G3V2	TCONS_l2_00015425	TCONS_l2_00015425	chr2	105282219	105282278	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4768_PI429285431	2.1388323	A	2.6903894	A	0.682283342789	0	lncRNA	4714-1_{1..549}	"transcript_id ""ENST00000548199.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548199.1"" | genecode_v17"	chr14	 36416762	 36417310	-	ENSG00000257614.1	ENST00000548199.1	RP11-116N8.2	RP11-116N8.2-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	inter
LNCA_21_P0011562	9.111954	P	9.0515585	P	1.04275158127797	0	lncRNA	TCONS_l2_00011027	NA	NA	NA	NA	XLOC_l2_005933	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005933), lincRNA [TCONS_l2_00011027]"	chr17:81060091-81060150	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_l2_00011027	TCONS_l2_00011027	chr17	 81060091	 81060150	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35482_PI429285431	6.6876855	P	5.5827107	P	2.15095120925731	0	lncRNA	36890-1_{1..1885}	n342580|D90070|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5079|NULL|0.7526780|-0.3442298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342580|D90070|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5079|NULL|0.7526780|-0.3442298	chr18	 57567236	 57569120	+	NA	NA	NA	NA	PMAIP1	NA	chr18:57557236-57571538	inner
CUST_35446_PI429285431	1.3546532	A	1.692368	A	0.791293713078125	0	lncRNA	36853-1_{1..2110}	n342518|AK124410|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5013|NULL|0.1283500|-0.3000394	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342518|AK124410|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5013|NULL|0.1283500|-0.3000394	chrY	  6786722	  6788831	+	NA	NA	NA	NA	TBL1Y	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10chrY:6776722-6798832"	NA	inner
CUST_462_PI429285431	2.1692019	A	2.6549318	A	0.714135677133259	0	lncRNA	453-1_{1..399}	"transcript_id ""ENST00000449345.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449345.1"" | genecode_v17"	chr1	157202021	157202419	-	ENSG00000228239.1	ENST00000449345.1	RP11-85G21.1	RP11-85G21.1-001	NA	NA	NA	inter
CUST_40033_PI429285431	0.90449864	A	1.2971525	A	0.76172710604022	0	lncRNA	40890-1_{1..1491}	n407225|NR_026693|lncRNA|Homosapiens||RefGeneNoncode|NR_026693||2.9244200|-0.2828559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407225|NR_026693|lncRNA|Homosapiens||RefGeneNoncode|NR_026693||2.9244200|-0.2828559	chr10	 43932573	 43934063	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28507_PI429285431	0.91276413	A	0.91779053	A	0.996522027219176	0	lncRNA	30176-1_{1..495}	n325852|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051013|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051013|-1.3321000|-0.2471323	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325852|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051013|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051013|-1.3321000|-0.2471323	chr10	131457097	131457591	+	NA	NA	NA	NA	MGMT	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10chr10:131447097-131467689"	NA	inner
CUST_9337_PI429285431	3.0124404	A	2.6422195	A	1.29255072595783	0	lncRNA	10843-3_{6001..7833}	lnc-PVRL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PVRL1-1:1	chr11	119494907	119496739	-	lnc-PVRL1-1	lnc-PVRL1-1:1	XLOC_009577	linc-THY1	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-20.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0,hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60"	NA	inter
CUST_4744_PI429285431	3.2118902	P	3.7505593	P	0.688405677068891	0	lncRNA	4688-1_{1..570}	"transcript_id ""ENST00000542992.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000542992.1"" | genecode_v17"	chr14	 22183018	 22183587	-	ENSG00000248358.2	ENST00000542992.1	AE000658.31	AE000658.31-001	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00"	NA	inter
CUST_31473_PI429285431	0.92449236	A	0.9158928	A	1.00597856145349	0	lncRNA	33239-2_{3001..4622}	n337952|AL137323|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|337|NULL|-0.8680140|-0.2421241	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337952|AL137323|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|337|NULL|-0.8680140|-0.2421241	chr1	 54607045	 54608666	+	NA	NA	NA	NA	CDCP2	"hg19_refFlat_CDCP2:range=chr1:54605193-546185955'pad=0,hg19_refFlat_CDCP2:range=chr1:54605193-546185955'pad=0 3'pad=0 strand=- repeatMasking=none,-100.90chr1:54604668-54618653"	NA	inner
CUST_24161_PI429285431	0.9289969	A	1.4916543	A	0.677053901933071	0	lncRNA	25712-1_{1..671}	lnc-C12orf66-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C12orf66-3:1	chr12	 64491266	 64491936	-	lnc-C12orf66-3	lnc-C12orf66-3:1	ENSG00000255886.1	RP11-196H14.2	SRGAP1	"hg19_refFlat_SRGAP1:range=chr12:64238597-645364525'pad=0,hg19_refFlat_SRGAP1:range=chr12:64238597-645364525'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SRGAP3:range=chr3:9027203-92906355'pad=0,hg19_refFlat_SRGAP3:range=chr3:9027203-92906355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60chr12:64481266-64501398"	NA	inner
CUST_22125_PI429285431	1.0620594	A	1.7146081	A	0.636155472701357	0	lncRNA	23728-1_{1..456}	lnc-GGCT-1:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GGCT-1:18	chr7	 30608449	 30608904	-	lnc-GGCT-1	lnc-GGCT-1:18	ENSG00000196295.5	AC005154.6	NA	NA	NA	inter
CUST_119_PI429201921	0.9272773	A	0.9161157	A	1.00776663663403	0	lncRNA	115-1_{1..3000}	TC17002477.hg.1	 TCONS_l2_00011082-XLOC_l2_005978 // Broad TUCP // linc-AURKB chr17:-:8123996-8126355 // chr17 // 100 // 100 // 0 // --- // 0///TCONS_l2_00011614-XLOC_l2_005978 // Broad TUCP // linc-AURKB chr17:-:8123948-8127361 // chr17 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr17:-:8123948-8127361	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00011614-XLOC_l2_005978	linc-AURKB	chr17	  8123948	  8127361	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17110_PI429285431	3.7527483	P	4.092544	P	0.790153197510924	0	lncRNA	18820-1_{1..886}	lnc-ETAA1-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ETAA1-4:5	chr2	 67800929	 67801814	+	lnc-ETAA1-4	lnc-ETAA1-4:5	XLOC_001515	linc-PNO1-1	NA	NA	NA	inter
CUST_40387_PI429285431	4.519263	P	5.371844	P	0.553793106283076	0	lncRNA	41180-2_{3001..3909}	n409235|NR_033399|lncRNA|Homosapiens||RefGeneNoncode|NR_033399||12.8804000|-0.1168847	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409235|NR_033399|lncRNA|Homosapiens||RefGeneNoncode|NR_033399||12.8804000|-0.1168847	chr12	  9573286	  9574194	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5489_PI429285431	0.9482837	A	1.7220315	A	0.584896069776892	0	lncRNA	5422-1_{1..538}	"transcript_id ""ENST00000563338.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563338.1"" | genecode_v17"	chr16	 31710997	 31711534	-	ENSG00000260568.1	ENST00000563338.1	CTD-2358C21.3	CTD-2358C21.3-001	NA	NA	NA	inter
CUST_26747_PI429285431	0.9207895	A	0.92577386	A	0.996551066201936	0	lncRNA	28241-1_{1..482}	n323791|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078422|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078422|-1.2574500|-0.3692310	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323791|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078422|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078422|-1.2574500|-0.3692310	chrX	150434678	150435159	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48761_PI429285431	7.861248	P	8.171048	P	0.806753591265779	0	lncRNA	52598-1_{1..949}	hg19_lincRNAsTranscripts_TCONS_l2_00014959 range=chr2:158066906-158067991 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014959 range=chr2:158066906-158067991 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	158066906	158067854	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00315529	2.6057074	A	3.1311831	P	0.694729998749275	0	lncRNA	AF088007	NA	AF088007	NA	Hs.46689	XLOC_008370	NA	NA	THC2700724	NA	"BROAD Institute lincRNA (XLOC_008370), lincRNA [TCONS_00018105]"	chr10:6628756-6628815	hs|10p14	Agilent_HUMAN_G3V2	AF088007	AF088007	chr10	  6628756	  6628815	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29701_PI429285431	7.4120164	P	8.279713	P	0.548021120416133	0	lncRNA	31463-1_{1..575}	n333367|BC002789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086165_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086165_04|1.4662200|-0.1820855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333367|BC002789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086165_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086165_04|1.4662200|-0.1820855	chr6	 30638817	 30639391	-	NA	NA	NA	NA	KIAA1949	NA	chr6:30644166-30650753	inner
CUST_48693_PI429285431	1.1137862	A	2.123761	A	0.496554921120985	0	lncRNA	52534-1_{1..2494}	hg19_lincRNAsTranscripts_TCONS_l2_00014778 range=chr2:111132703-111135777 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014778 range=chr2:111132703-111135777 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	111132703	111135196	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42283_PI429285431	2.4371204	A	3.0320165	P	0.662092136026935	0	lncRNA	44896-1_{1..84}	ENST00000516069 ncrna:snoRNA chromosome:GRCh37:4:185353120:185353203:1 gene:ENSG00000251878 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516069 ncrna:snoRNA chromosome:GRCh37:4:185353120:185353203:1 gene:ENSG00000251878 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	185353120	185353203	+	ENSG00000251878	ENST00000516069	NA	NA	IRF2	NA	chr4:185343120-185363203	inner
CUST_47830_PI429285431	8.26752	P	8.132137	P	1.09838436908192	0	lncRNA	51739-5_{12001..15000}	"gi|410170958|ref|XR_171122.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410170958|ref|XR_171122.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	XR_171122.1	NA	NA	NA	NA	NA	Unknown
CUST_44820_PI429285431	1.904502	A	2.255811	A	0.783872544330115	0	lncRNA	49354-1_{1..3000}	"gi|84872052|ref|NR_002768.1| Homo sapiens hydatidiform mole associated and imprinted (non-protein coding) (HYMAI), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|84872052|ref|NR_002768.1| Homo sapiens hydatidiform mole associated and imprinted (non-protein coding) (HYMAI), non-coding RNA"	Chr6	144324023	144327022	-	57061	NR_002768.1	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50"	NA	inter
CUST_46238_PI429285431	1.0885955	A	1.4648795	A	0.770419433437495	0	lncRNA	50477-2_{3001..3353}	"gi|310123054|ref|XR_110128.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 402 (LINC00402), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310123054|ref|XR_110128.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 402 (LINC00402), misc_RNA"	NA	NA	NA	NA	NA	XR_110128.1	NA	NA	NA	NA	NA	Unknown
CUST_36684_PI429285431	1.3791227	A	1.4777981	A	0.933890042405824	0	lncRNA	37867-1_{1..3000}	n345173|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_722|NULL|-1.2545800|-0.3612991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n345173|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_722|NULL|-1.2545800|-0.3612991	chr12	 31996070	 31999069	-	NA	NA	NA	NA	NA	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00"	NA	inter
CUST_10385_PI429285431	1.102279	A	1.1281936	A	0.982197734510827	0	lncRNA	11913-1_{1..498}	lnc-OR4F29-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR4F29-3:4	chr1	   532679	   533176	+	lnc-OR4F29-3	lnc-OR4F29-3:4	XLOC_000004	linc-SAMD11-8	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60"	NA	inter
CUST_27368_PI429285431	2.513629	A	2.3409507	A	1.12714904628597	0	lncRNA	28931-1_{1..514}	n324530|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040406|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040406|-1.0880300|-0.1670436	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324530|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040406|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040406|-1.0880300|-0.1670436	chr6	 37622305	 37622818	+	NA	NA	NA	NA	MDGA1	NA	chr6:37612305-37633468	inner
CUST_47989_PI429285431	5.564425	P	5.6313915	P	0.954643181108038	0	lncRNA	51877-1_{1..567}	"gi|410173061|ref|XR_172111.1| PREDICTED: Homo sapiens uncharacterized LOC400464 (LOC400464), partial misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173061|ref|XR_172111.1| PREDICTED: Homo sapiens uncharacterized LOC400464 (LOC400464), partial misc_RNA"	NA	NA	NA	NA	NA	XR_172111.1	NA	NA	NA	NA	NA	Unknown
CUST_34891_PI429285431	0.9225389	A	1.2008562	A	0.824552180287311	0	lncRNA	36316-1_{1..1696}	n341806|AK097774|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4284|NULL|-0.2086800|-0.1553890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341806|AK097774|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4284|NULL|-0.2086800|-0.1553890	chr9	138317614	138319309	-	NA	NA	NA	NA	GLT6D1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0,hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20chr9:138479852-138531386"	NA	inner
CUST_11351_PI429285431	0.9294827	A	0.9242162	A	1.00365713066915	0	lncRNA	12914-1_{1..387}	lnc-LZTS1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LZTS1-2:3	chr8	 20812166	 20812552	-	lnc-LZTS1-2	lnc-LZTS1-2:3	XLOC_007018	linc-LZTS1-2	NA	NA	NA	inter
CUST_38972_PI429285431	2.6855626	A	2.2034075	A	1.39682869343629	0	lncRNA	39956-1_{1..2000}	n385196|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tuf.2||0.2676150|-0.1806954	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n385196|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tuf.2||0.2676150|-0.1806954	chr7	 65187620	 65189619	-	NA	NA	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10"	NA	inter
CUST_50742_PI429285431	5.6467986	P	6.000289	P	0.782688200147842	0	lncRNA	54410-1_{1..790}	hg19_lincRNAsTranscripts_TCONS_l2_00003831 range=chr10:131862181-131909062 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003831 range=chr10:131862181-131909062 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	131862181	131862970	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28354_PI429285431	2.9868906	A	3.242041	P	0.837899779619052	0	lncRNA	30003-1_{1..687}	n325663|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045424|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045424|-1.0237600|-0.4768276	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325663|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045424|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045424|-1.0237600|-0.4768276	chr13	 88665150	 88665836	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19152_PI429285431	4.035716	P	4.232791	P	0.872317356268294	0	lncRNA	20826-1_{1..708}	lnc-NDFIP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDFIP1-3:1	NA	NA	      707	NA	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80"	NA	Unknown
CUST_47291_PI429285431	0.9192599	A	1.2234746	A	0.809882938937505	0	lncRNA	51360-1_{1..1633}	"gi|221136796|ref|NR_026640.1| Homo sapiens makorin ring finger protein 7, pseudogene (MKRN7P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|221136796|ref|NR_026640.1| Homo sapiens makorin ring finger protein 7, pseudogene (MKRN7P), non-coding RNA"	Chr20	 45092299	 45093931	-	7686	NR_026640.1	NA	NA	NA	NA	NA	inter
CUST_33770_PI429285431	0.9852149	A	1.2702597	A	0.820716122722211	0	lncRNA	35323-1_{1..361}	n340552|AF086018|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3014|NULL|-1.1444300|-0.4288348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340552|AF086018|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3014|NULL|-1.1444300|-0.4288348	chr5	 92763994	 92764354	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15607_PI429285431	0.9056178	A	0.8980456	A	1.00526244736945	0	lncRNA	17294-1_{1..508}	lnc-AC025287.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC025287.1-2:3	chr16	 76181454	 76181961	-	lnc-AC025287.1-2	lnc-AC025287.1-2:3	XLOC_012013	linc-KARS-1	NA	NA	NA	inter
CUST_21981_PI429285431	0.9029855	A	1.0443921	A	0.906634772741238	0	lncRNA	23589-1_{1..378}	lnc-KIAA1147-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1147-3:2	chr7	141250944	141251321	-	lnc-KIAA1147-3	lnc-KIAA1147-3:2	ENSG00000261570.1	RP11-744I24.2	AGK	NA	chr7:141251078-141260993	inter
CUST_4319_PI429285431	6.558476	P	6.6042476	P	0.968771547976229	0	lncRNA	4274-1_{1..550}	"transcript_id ""ENST00000433116.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433116.2"" | genecode_v17"	chr12	 69079349	 69079898	-	ENSG00000247363.2	ENST00000433116.2	RP11-637A17.2	RP11-637A17.2-003	NUP107	NA	chr12:69079560-69090617	inter
CUST_17297_PI429285431	1.2380766	A	1.3314754	A	0.937311962219503	0	lncRNA	19016-1_{1..424}	lnc-ZFP64-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP64-4:4	chr20	 51233279	 51233702	-	lnc-ZFP64-4	lnc-ZFP64-4:4	XLOC_013798	linc-ZFP64-6	NA	NA	NA	inter
CUST_33049_PI429285431	0.9146213	A	0.89873594	A	1.01107173547976	0	lncRNA	34661-1_{1..1699}	n339739|CR590645|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2185|NULL|-1.0502000|-0.2237380	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n339739|CR590645|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2185|NULL|-1.0502000|-0.2237380	chr20	 58662941	 58664639	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_52130_PI429285431	11.172872	P	10.665878	P	1.42108613303799	0	lncRNA	55654-1_{1..2346}	hg19_lincRNAsTranscripts_TCONS_l2_00018322 range=chr22:20383524-20398220 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018322 range=chr22:20383524-20398220 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 20383524	 20385869	-	NA	NA	NA	NA	TMEM191B	NA	chr22:20373524-20380440	inter
CUST_2370_PI429285431	7.356786	P	7.25108	P	1.07602082524398	0	lncRNA	2363-1_{1..541}	"transcript_id ""ENST00000509530.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509530.1"" | genecode_v17"	chr5	134460070	134460610	-	ENSG00000248482.1	ENST00000509530.1	CTC-276P9.3	CTC-276P9.3-001	NA	NA	NA	inter
CUST_51252_PI429285431	2.7614355	A	2.6003356	P	1.11813927429026	0	lncRNA	54862-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008479 range=chr15:28900749-28928519 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008479 range=chr15:28900749-28928519 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28900749	 28903748	+	NA	NA	NA	NA	NA	"hg19_refFlat_HERC2:range=chr15:28356909-285665795'pad=0,hg19_refFlat_HERC2:range=chr15:28356909-285665795'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30"	NA	inter
CUST_25003_PI429285431	3.9929364	P	3.1455746	P	1.79920777421828	0	lncRNA	26543-2_{3001..6000}	lnc-SNURF-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNURF-3:4	chr15	 25357702	 25360701	+	lnc-SNURF-3	lnc-SNURF-3:4	ENSG00000224078.4	SNHG14	SNRPN	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40chr15:25344702-25369074"	NA	inter
CUST_17354_PI429285431	1.5930228	A	1.2979642	A	1.22693481240107	0	lncRNA	19074-1_{1..700}	lnc-NTN1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTN1-4:1	chr17	  8671524	  8672223	+	lnc-NTN1-4	lnc-NTN1-4:1	XLOC_012105	linc-NTN1-2	SPDYE4	NA	chr17:8661524-8661877	inter
CUST_5366_PI429285431	0.92224324	A	1.3705977	A	0.732878293443055	0	lncRNA	5304-1_{1..3000}	"transcript_id ""ENST00000431060.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431060.3"" | genecode_v17"	chr15	101390036	101393035	+	ENSG00000232386.4	ENST00000431060.3	RP11-66B24.2	RP11-66B24.2-002	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40"	NA	inter
CUST_21373_PI429285431	0.920845	A	0.908274	A	1.0087516267164	0	lncRNA	22995-1_{1..954}	lnc-TRPM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRPM1-1:1	chr15	 31522910	 31523863	-	lnc-TRPM1-1	lnc-TRPM1-1:1	ENSG00000259772.1	RP11-16E12.2	LOC283710	NA	chr15:31514970-31523050	inner
CUST_9456_PI429285431	1.0813851	A	1.6670148	A	0.666358426415011	0	lncRNA	10961-1_{1..503}	lnc-ACTR2-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACTR2-3:6	chr2	 65957633	 65958135	+	lnc-ACTR2-3	lnc-ACTR2-3:6	XLOC_001504	linc-MEIS1-4	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90"	NA	inter
CUST_17385_PI429285431	0.904932	A	0.9825255	A	0.947637043301354	0	lncRNA	19107-1_{1..697}	lnc-FAM153C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM153C-2:1	chr5	177389519	177390215	+	lnc-FAM153C-2	lnc-FAM153C-2:1	XLOC_004670	linc-FAM153C-1	NA	NA	NA	inter
CUST_42946_PI429285431	3.2962384	P	4.0330734	P	0.60005431504515	0	lncRNA	46066-1_{1..135}	ENST00000459339 ncrna:snoRNA chromosome:GRCh37:2:75716702:75716836:1 gene:ENSG00000238410 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459339 ncrna:snoRNA chromosome:GRCh37:2:75716702:75716836:1 gene:ENSG00000238410 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 75716702	 75716836	+	ENSG00000238410	ENST00000459339	NA	NA	FAM176A	NA	chr2:75706702-75726836	inter
CUST_50739_PI429285431	1.3777134	A	2.1164556	A	0.599261585158748	0	lncRNA	54407-1_{1..1181}	hg19_lincRNAsTranscripts_TCONS_l2_00003298 range=chr10:124579884-124586266 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003298 range=chr10:124579884-124586266 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	124579884	124581064	+	NA	NA	NA	NA	CUZD1	NA	chr10:124591671-124596266	inter
LNCA_33_P3360785	2.3399057	A	1.5968082	A	1.6737655977203	0	lncRNA	XR_109287	XR_109287	XR_109287	100128371	Hs.689386	LOC100128371	uncharacterized LOC100128371	NA	NP852699	NA	"PREDICTED: Homo sapiens hypothetical LOC100128371 (LOC100128371), miscRNA [XR_109287]"	chr16:31506760-31506701	hs|16p11.2	Agilent_HUMAN_G3V2	XR_109287	XR_109287	chr16	 31506701	 31506760	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4432_PI429285431	0.9242767	A	0.90829635	A	1.01113830870784	0	lncRNA	4382-1_{1..450}	"transcript_id ""ENST00000538783.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000538783.1"" | genecode_v17"	chr12	119256609	119257058	-	ENSG00000255814.1	ENST00000538783.1	RP11-357K6.2	RP11-357K6.2-001	NA	NA	NA	inter
CUST_49645_PI429285431	4.9200864	P	4.757293	P	1.11945256685746	0	lncRNA	53428-1_{1..2365}	hg19_lincRNAsTranscripts_TCONS_l2_00026581 range=chr7:56470590-56516078 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026581 range=chr7:56470590-56516078 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 56470590	 56472954	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00"	NA	inter
CUST_48473_PI429285431	5.00239	P	4.7137003	P	1.22153034230986	0	lncRNA	52325-1_{1..1030}	hg19_lincRNAsTranscripts_TCONS_l2_00001812 range=chr1:224161743-224174336 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001812 range=chr1:224161743-224174336 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	224161743	224162772	-	NA	NA	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80"	NA	inter
CUST_17509_PI429285431	0.92903924	A	1.9893725	A	0.479521278301732	0	lncRNA	19234-1_{1..571}	lnc-MAGEF1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAGEF1-2:1	chr3	184274600	184275170	-	lnc-MAGEF1-2	lnc-MAGEF1-2:1	XLOC_003355	linc-THPO-1	EPHB3	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00chr3:184279587-184284706"	NA	inter
CUST_8898_PI429285431	3.5868433	P	3.8174503	P	0.85227622933206	0	lncRNA	10433-1_{1..793}	lnc-OSBPL6-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OSBPL6-2:3	chr2	179295774	179296566	+	lnc-OSBPL6-2	lnc-OSBPL6-2:3	ENSG00000223960	AC009948.5	PRKRA	NA	chr2:179296141-179306068	inter
CUST_37869_PI429285431	0.91104555	A	0.89929575	A	1.0081775961049	0	lncRNA	38961-1_{1..345}	n346405|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1955|NULL|-1.2809900|-0.1887264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346405|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1955|NULL|-1.2809900|-0.1887264	chr5	123833014	123833358	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46152_PI429285431	7.961067	P	8.118964	P	0.896330690061442	0	lncRNA	50401-1_{1..2236}	"gi|218505817|ref|NR_024600.1| Homo sapiens diablo, IAP-binding mitochondrial protein (DIABLO), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|218505817|ref|NR_024600.1| Homo sapiens diablo, IAP-binding mitochondrial protein (DIABLO), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_024600.1	NA	NA	NA	NA	NA	Unknown
CUST_48615_PI429285431	1.0819454	A	1.6763473	A	0.662318976747594	0	lncRNA	52461-2_{3001..3190}	hg19_lincRNAsTranscripts_TCONS_l2_00015350 range=chr2:65908047-65928945 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015350 range=chr2:65908047-65928945 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 65911047	 65911236	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32015_PI429285431	2.318679	A	2.350268	A	0.978342147277182	0	lncRNA	33736-1_{1..349}	n338580|Z36849|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|986|NULL|-0.6612580|-0.2499781	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338580|Z36849|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|986|NULL|-0.6612580|-0.2499781	chr19	 38782740	 38783088	-	NA	NA	NA	NA	SPINT2	NA	chr19:38772740-38783254	inner
CUST_48532_PI429285431	1.2483217	A	1.5821478	A	0.793429476063324	0	lncRNA	52382-1_{1..1131}	hg19_lincRNAsTranscripts_TCONS_l2_00013836 range=chr2:98286174-98319621 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013836 range=chr2:98286174-98319621 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 98286174	 98287304	+	NA	NA	NA	NA	ACTR1B	NA	chr2:98276174-98280561	inter
CUST_24326_PI429285431	1.0918608	A	1.6392548	A	0.684255010990423	0	lncRNA	25879-1_{1..478}	lnc-PTPN3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPN3-2:1	chr9	112534255	112534732	-	lnc-PTPN3-2	lnc-PTPN3-2:1	ENSG00000232939.1	RP11-406O23.2	PALM2-AKAP2	NA	chr9:112542577-112544323	inner
CUST_3888_PI429285431	3.492752	P	4.2281013	P	0.600672574528834	0	lncRNA	3857-1_{1..786}	"transcript_id ""ENST00000527083.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527083.1"" | genecode_v17"	chr11	 27639173	 27639958	-	ENSG00000254934.1	ENST00000527083.1	LINC00678	LINC00678-001	NA	NA	NA	inter
CUST_27931_PI429285431	1.5115067	A	1.9982035	A	0.713657220889113	0	lncRNA	29532-1_{1..881}	n325175|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332148|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332148|-1.2024900|-0.3547261	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325175|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332148|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332148|-1.2024900|-0.3547261	chr2	111965990	111966870	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13432_PI429285431	3.2256608	P	3.4632173	P	0.848180664435167	0	lncRNA	15071-1_{1..686}	lnc-C10orf31-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-C10orf31-7:1	chr10	 10836802	 10837487	-	lnc-C10orf31-7	lnc-C10orf31-7:1	XLOC_008730	linc-KIN-6	NA	NA	NA	inter
CUST_14585_PI429285431	2.542706	A	1.9779804	A	1.47910615711391	0	lncRNA	16252-1_{1..1603}	lnc-ETNK2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ETNK2-1:5	chr1	204010220	204011822	-	lnc-ETNK2-1	lnc-ETNK2-1:5	XLOC_001164	linc-FMOD-1	NA	NA	NA	inter
CUST_52128_PI429285431	4.0152454	P	4.509344	P	0.710005152799792	0	lncRNA	55652-1_{1..1386}	hg19_lincRNAsTranscripts_TCONS_l2_00017604 range=chr22:20378688-20380886 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017604 range=chr22:20378688-20380886 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 20378688	 20380073	+	NA	NA	NA	NA	TMEM191B	NA	chr22:20368688-20380440	inner
CUST_36175_PI429285431	0.9126897	A	0.90397274	A	1.00606042677166	0	lncRNA	37445-2_{3001..4326}	n344733|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_282|NULL|-1.3380300|-0.2313179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344733|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_282|NULL|-1.3380300|-0.2313179	chr8	128826491	128827816	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10"	NA	inter
CUST_24958_PI429285431	2.8981154	A	3.4233038	P	0.694868361880906	0	lncRNA	26496-1_{1..584}	lnc-DTYMK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DTYMK-1:1	chr2	242665080	242665663	-	lnc-DTYMK-1	lnc-DTYMK-1:1	ENSG00000235351.1	AC114730.11	ING5	"hg19_refFlat_ING5:range=chr2:242641481-2426644465'pad=0,hg19_refFlat_ING5:range=chr2:242641481-2426644465'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90chr2:242655080-242668896"	NA	inner
CUST_12426_PI429285431	0.9390739	A	1.5374335	A	0.660504547768711	0	lncRNA	14039-1_{1..233}	lnc-ANGPT2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANGPT2-5:1	chr8	  5860524	  5860756	-	lnc-ANGPT2-5	lnc-ANGPT2-5:1	XLOC_006983	linc-CSMD1-4	NA	NA	NA	inter
CUST_44686_PI429285431	7.039205	P	6.9958405	P	1.03051428237866	0	lncRNA	49246-1_{1..1203}	"gi|360039210|ref|NR_045612.1| Homo sapiens vomeronasal 1 receptor 10 pseudogene (VN1R10P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|360039210|ref|NR_045612.1| Homo sapiens vomeronasal 1 receptor 10 pseudogene (VN1R10P), non-coding RNA"	Chr6	 27292540	 27293742	+	387316	NR_045612.1	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10"	NA	inter
CUST_29057_PI429285431	5.877924	P	5.900709	P	0.984330702604891	0	lncRNA	30785-1_{1..736}	n326546|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026942|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026942|-0.9342950|-0.2165147	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326546|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026942|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026942|-0.9342950|-0.2165147	chr1	 83684323	 83685058	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009535	5.509687	P	5.919819	P	0.752554515258123	0	lncRNA	TCONS_00026461	NA	NA	NA	NA	XLOC_012793	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012793), lincRNA [TCONS_00026461]"	chr18:22251213-22251154	hs|18q11.2	Agilent_HUMAN_G3V2	TCONS_00026461	TCONS_00026461	chr18	 22251154	 22251213	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47445_PI429285431	10.348218	P	10.626553	P	0.824542064161831	0	lncRNA	51477-1_{1..2471}	"gi|299758463|ref|NR_033825.1| Homo sapiens kelch-like 22 (Drosophila) (KLHL22), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299758463|ref|NR_033825.1| Homo sapiens kelch-like 22 (Drosophila) (KLHL22), transcript variant 2, non-coding RNA"	Chr22	 20795806	 20798276	-	84861	NR_033825.1	NA	NA	NA	NA	NA	inter
CUST_28408_PI429285431	0.9119373	A	0.9603784	A	0.966980632770427	0	lncRNA	30066-1_{1..531}	n325729|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045015|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045015|-1.2102100|-0.3817873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325729|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045015|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045015|-1.2102100|-0.3817873	chr13	 50476389	 50476919	-	NA	NA	NA	NA	SPRYD7	NA	chr13:50486842-50489997	inter
CUST_25087_PI429285431	1.4915502	A	1.394215	A	1.06979561846573	0	lncRNA	26624-1_{1..574}	lnc-RGS5-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RGS5-1:4	chr1	163291056	163291629	-	lnc-RGS5-1	lnc-RGS5-1:4	ENSG00000232995.2	RP11-267N12.3	NUF2	NA	chr1:163291723-163301564	inner
CUST_2852_PI429285431	1.641465	A	1.3958402	A	1.18560612012558	0	lncRNA	2835-1_{1..805}	"transcript_id ""ENST00000596569.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596569.1"" | genecode_v17"	chr7	 63359204	 63360008	-	ENSG00000236299.3	ENST00000596569.1	RP11-340I6.7	RP11-340I6.7-006	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70"	NA	inter
CUST_19170_PI429285431	1.8726254	A	2.8403945	A	0.511296090511939	0	lncRNA	20839-1_{1..312}	lnc-CHAC1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHAC1-4:1	chr15	 41316685	 41316996	+	lnc-CHAC1-4	lnc-CHAC1-4:1	ENSG00000259521.1	RP11-540O11.4	INO80	NA	chr15:41306685-41326740	inner
CUST_11769_PI429285431	1.2907181	A	1.5529943	A	0.83377140530054	0	lncRNA	13348-1_{1..889}	lnc-C15orf2-9:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-9:3	chr15	 24523358	 24524246	+	lnc-C15orf2-9	lnc-C15orf2-9:3	XLOC_011174	linc-C15orf2-8	NA	NA	NA	inter
CUST_20972_PI429285431	0.90997493	A	0.9095087	A	1.00032321823375	0	lncRNA	22602-1_{1..577}	lnc-MFNG-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MFNG-2:2	chr22	 37823333	 37823909	-	lnc-MFNG-2	lnc-MFNG-2:2	ENSG00000243902.1	RP1-63G5.5	ELFN2	NA	chr22:37813333-37823505	inner
CUST_20507_PI429285431	1.8360252	A	1.7672427	A	1.04883119437641	0	lncRNA	22149-1_{1..267}	lnc-PGA5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PGA5-1:1	chr11	 61015891	 61016157	+	lnc-PGA5-1	lnc-PGA5-1:1	ENSG00000256220.1	CTD-2331C18.5	PGA5	NA	chr11:61008644-61018929	inner
CUST_29222_PI429285431	4.6344523	P	4.633787	P	1.00046125716561	0	lncRNA	30972-1_{1..513}	n326746|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007013|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007013|-0.9392450|-0.2409324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326746|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007013|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007013|-0.9392450|-0.2409324	chr1	   707187	   707699	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39064_PI429285431	1.7095817	A	1.4397365	A	1.20567845243638	0	lncRNA	40039-2_{3001..4237}	n385527|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004acg.2||0.8578450|-0.1741851	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n385527|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004acg.2||0.8578450|-0.1741851	chr9	 42469316	 42470552	+	NA	NA	NA	NA	CBWD7	NA	chr9:42478004-42484237	inter
CUST_28935_PI429285431	1.0448408	A	0.95570725	A	1.0637311377207	0	lncRNA	30654-1_{1..834}	n326362|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058348|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058348|-0.4607730|-0.2102558	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326362|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058348|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058348|-0.4607730|-0.2102558	chr1	156368457	156369290	-	NA	NA	NA	NA	C1orf61	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40chr1:156374055-156387053"	NA	inner
CUST_16564_PI429285431	3.7024999	P	4.4567432	P	0.59285726022003	0	lncRNA	18265-1_{1..1932}	lnc-TCF12-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF12-1:9	chr15	 57599740	 57601671	+	lnc-TCF12-1	lnc-TCF12-1:9	XLOC_011264	linc-CGNL1-2	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
LNCA_21_P0012589	0.95095664	A	0.9291024	A	1.01526352043318	0	lncRNA	TCONS_l2_00020560	NA	NA	NA	NA	XLOC_l2_010702	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010702), lincRNA [TCONS_l2_00020560]"	chr4:69652438-69652948	hs|4q13.2	Agilent_HUMAN_G3V2	TCONS_l2_00020560	TCONS_l2_00020560	chr4	 69652438	 69652948	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001527	0.95471036	A	0.92988443	A	1.01735693434686	0	lncRNA	TCONS_00001551	NA	NA	NA	NA	XLOC_000894	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000894), lincRNA [TCONS_00001551]"	chr1:84937640-84937581	hs|1p22.3	Agilent_HUMAN_G3V2	TCONS_00001551	TCONS_00001551	chr1	 84937581	 84937640	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10400_PI429285431	5.004285	P	5.15868	P	0.898509087309603	0	lncRNA	11927-1_{1..357}	lnc-SLC25A6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A6-1:2	chrX	  1517718	  1518074	-	lnc-SLC25A6-1	lnc-SLC25A6-1:2	XLOC_008099	linc-SLC25A6-2	SLC25A6	NA	chrX:1507718-1511039	inter
CUST_28734_PI429285431	5.8043423	P	6.6140914	P	0.570481062027171	0	lncRNA	30434-1_{1..484}	n326127|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046439|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046439|-0.2964310|-0.2673959	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326127|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046439|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046439|-0.2964310|-0.2673959	chr10	  2044846	  2045329	-	NA	NA	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80"	NA	inter
CUST_30966_PI429285431	4.746181	P	5.4014044	P	0.634977158027357	0	lncRNA	32754-1_{1..309}	n337093|DQ438902|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343362|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343362|-1.3655300|-0.0671597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337093|DQ438902|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343362|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343362|-1.3655300|-0.0671597	chr9	  4118745	  4119053	-	NA	NA	NA	NA	GLIS3	NA	chr9:4108745-4300035	inner
CUST_2975_PI429285431	0.92925966	A	1.0198617	A	0.939130765976454	0	lncRNA	2954-1_{1..577}	"transcript_id ""ENST00000523971.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523971.1"" | genecode_v17"	chr8	  2523591	  2524167	-	ENSG00000254319.1	ENST00000523971.1	RP11-134O21.1	RP11-134O21.1-004	NA	NA	NA	inter
CUST_7575_PI429285431	10.006943	P	10.256273	P	0.841287025484253	0	lncRNA	9210-1_{1..493}	lnc-EVX1-10:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EVX1-10:10	chr7	 27163631	 27164123	+	lnc-EVX1-10	lnc-EVX1-10:10	ENSG00000253552	AC004080.12	HOXA3	NA	chr7:27153631-27166639	inner
CUST_21106_PI429285431	1.4743671	A	1.5135972	A	0.973174147153705	0	lncRNA	22731-1_{1..649}	lnc-TM2D1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TM2D1-2:3	chr1	 61418183	 61418831	-	lnc-TM2D1-2	lnc-TM2D1-2:3	ENSG00000237928.1	RP4-668G5.1	NA	NA	NA	inter
CUST_27591_PI429285431	6.880012	P	6.965337	P	0.942572176094629	0	lncRNA	29170-1_{1..487}	n324794|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194935|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194935|-0.9892670|-0.2270611	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324794|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194935|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194935|-0.9892670|-0.2270611	chr21	 39140040	 39140526	+	NA	NA	NA	NA	KCNJ6	NA	chr21:39130040-39152438	inner
CUST_21531_PI429285431	6.7761855	P	6.795382	P	0.986782133629983	0	lncRNA	23149-1_{1..864}	lnc-SLC15A3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC15A3-1:1	chr11	 60692691	 60693554	-	lnc-SLC15A3-1	lnc-SLC15A3-1:1	ENSG00000256196.1	RP11-881M11.4	TMEM109	NA	chr11:60682691-60690915	inner
CUST_29874_PI429285431	11.578392	P	11.433616	P	1.10555898541262	0	lncRNA	31637-1_{1..322}	n333874|L32559|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193048|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193048|-1.3089200|-0.3566946	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333874|L32559|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193048|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193048|-1.3089200|-0.3566946	chr4	 10075967	 10076288	-	NA	NA	NA	NA	WDR1	NA	chr4:10075963-10086289	inner
CUST_11958_PI429285431	0.9764828	A	0.99277616	A	0.988769837840694	0	lncRNA	13537-1_{1..517}	lnc-BAMBI-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BAMBI-1:2	chr10	 29046289	 29046805	+	lnc-BAMBI-1	lnc-BAMBI-1:2	XLOC_008424	linc-LYZL1-6	NA	NA	NA	inter
CUST_36206_PI429285431	13.652231	P	13.429698	P	1.16678035419387	0	lncRNA	37462-1_{1..3000}	n344751|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_300|NULL|-1.3822400|-0.1946391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344751|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_300|NULL|-1.3822400|-0.1946391	chrX	 62646437	 62649436	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28513_PI429285431	0.9262206	A	1.3274825	A	0.757195687755131	0	lncRNA	30182-1_{1..1168}	n325858|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050968|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050968|-0.9043460|-0.2348138	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325858|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050968|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050968|-0.9043460|-0.2348138	chr10	128092427	128093594	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40"	NA	inter
LNCA_21_P0014748	4.72032	P	4.773234	P	0.963987269942956	0	lncRNA	XR_133234	XR_133234	XR_133234	NA	NA	LOC100653178	uncharacterized LOC100653178	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100653178 (LOC100653178), miscRNA [XR_133234]"	chr1:21771457-21766799	hs|1p36.12	Agilent_HUMAN_G3V2	XR_133234	XR_133234	chr1	 21766799	 21771457	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2099_PI429285431	2.1616163	A	2.4273355	A	0.831783977500915	0	lncRNA	2090-1_{1..578}	"transcript_id ""ENST00000511596.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511596.1"" | genecode_v17"	chr5	 17684693	 17685270	+	ENSG00000249937.1	ENST00000511596.1	RP11-454P21.1	RP11-454P21.1-005	NA	NA	NA	inter
CUST_38990_PI429285431	8.171978	P	8.032981	P	1.10113930834076	0	lncRNA	39971-1_{1..929}	n385245|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003uuj.1||0.4142450|-0.3761455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385245|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003uuj.1||0.4142450|-0.3761455	chr7	 99927418	 99928346	-	NA	NA	NA	NA	SPDYE3	NA	chr7:99917418-99919819	inter
CUST_24982_PI429285431	1.5298171	A	1.2726016	A	1.19516971787003	0	lncRNA	26522-1_{1..756}	lnc-RP11-404L6.2.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RP11-404L6.2.1-1:2	chr5	 67093178	 67093933	+	lnc-RP11-404L6.2.1-1	lnc-RP11-404L6.2.1-1:2	ENSG00000249364.1	RP11-434D9.1	NA	NA	NA	inter
CUST_40570_PI429285431	2.0073724	A	1.9668435	A	1.02849080798207	0	lncRNA	41324-1_{1..2295}	n410006|NR_036433|lncRNA|Homosapiens||RefGeneNoncode|NR_036433||2.7908400|-0.3461364	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410006|NR_036433|lncRNA|Homosapiens||RefGeneNoncode|NR_036433||2.7908400|-0.3461364	chr3	101237710	101240004	+	NA	NA	NA	NA	SENP7	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70chr3:101227710-101232085"	NA	inter
CUST_33764_PI429285431	0.92748904	A	1.6275223	A	0.615558015388083	0	lncRNA	35318-1_{1..2067}	n340544|BC010870|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3006|NULL|4.1571000|-0.2929500	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340544|BC010870|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3006|NULL|4.1571000|-0.2929500	chr5	 87980869	 87982935	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11218_PI429285431	0.92336684	A	2.5092235	A	0.333126802681106	0	lncRNA	12776-1_{1..310}	lnc-BHLHE22-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BHLHE22-3:1	chr8	 65929884	 65930193	+	lnc-BHLHE22-3	lnc-BHLHE22-3:1	XLOC_006825	linc-MTFR1-1	NA	NA	NA	inter
CUST_28168_PI429285431	0.89964014	A	0.90282303	A	0.997796220665708	0	lncRNA	29794-1_{1..447}	n325446|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323256|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323256|-0.9098730|-0.3008480	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325446|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323256|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323256|-0.9098730|-0.3008480	chr2	  8196982	  8197428	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36465_PI429285431	0.9723947	A	0.9952651	A	0.984272437100637	0	lncRNA	37673-1_{1..2194}	n344973|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_522|NULL|-1.3126200|-0.2730759	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344973|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_522|NULL|-1.3126200|-0.2730759	chr7	129246942	129249135	+	NA	NA	NA	NA	NRF1	NA	chr7:129251555-129261405	inter
CUST_10486_PI429285431	1.774653	A	1.6614107	A	1.08165641194976	0	lncRNA	12014-1_{1..301}	lnc-STAG3L4-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STAG3L4-1:5	chr7	 66821018	 66821318	+	lnc-STAG3L4-1	lnc-STAG3L4-1:5	XLOC_006138	linc-AUTS2-5	NA	NA	NA	inter
CUST_36623_PI429285431	0.93452406	A	1.1297063	A	0.873462553907146	0	lncRNA	37817-1_{1..1077}	n345120|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_669|NULL|-1.6562900|-0.3431264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345120|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_669|NULL|-1.6562900|-0.3431264	chr10	 74761684	 74762760	+	NA	NA	NA	NA	P4HA1	NA	chr10:74766975-74774118	inter
CUST_6470_PI429285431	0.92414623	A	0.9206751	A	1.00240890072315	0	lncRNA	6411-2_{3001..5302}	"transcript_id ""ENST00000601776.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000601776.1"" | genecode_v17"	chr19	 35333086	 35335387	+	ENSG00000269086.2	ENST00000601776.1	CTC-523E23.5	CTC-523E23.5-001	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
CUST_39847_PI429285431	4.533345	P	4.21349	P	1.24820509007037	0	lncRNA	40748-1_{1..2377}	n406466|NR_023360|lncRNA|Homosapiens||RefGeneNoncode|NR_023360||0.5408800|-0.2535044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406466|NR_023360|lncRNA|Homosapiens||RefGeneNoncode|NR_023360||0.5408800|-0.2535044	chr8	141521396	141523772	+	NA	NA	NA	NA	CHRAC1	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr8:141521401-141527252"	NA	inter
CUST_16381_PI429285431	1.9340839	A	0.9874671	A	1.92734761697816	0	lncRNA	18079-1_{1..741}	lnc-RASA1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASA1-3:1	chr5	 87566343	 87567083	+	lnc-RASA1-3	lnc-RASA1-3:1	XLOC_004456	linc-POLR3G-11	TMEM161B	NA	chr5:87556343-87564665	inter
CUST_6054_PI429285431	9.910395	P	9.383828	P	1.44049734355258	0	lncRNA	5980-1_{1..557}	"transcript_id ""ENST00000585028.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585028.1"" | genecode_v17"	chr18	  4775053	  4775609	-	ENSG00000266268.1	ENST00000585028.1	RP11-172F10.1	RP11-172F10.1-002	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40"	NA	inter
CUST_45177_PI429285431	5.413501	P	3.763802	P	3.13768168585193	0	lncRNA	49650-1_{1..3000}	"gi|229577149|ref|NR_027639.1| Homo sapiens ADAM metallopeptidase domain 9 (ADAM9), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|229577149|ref|NR_027639.1| Homo sapiens ADAM metallopeptidase domain 9 (ADAM9), transcript variant 4, non-coding RNA"	Chr8	 38854505	 38857504	+	8754	NR_027639.1	NA	NA	NA	NA	NA	inter
CUST_41077_PI429285431	0.9303448	A	0.9612764	A	0.978788054879333	0	lncRNA	41755-1_{1..88}	ENST00000579826 ncrna:miRNA chromosome:GRCh37:3:125409100:125409187:1 gene:ENSG00000266857 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579826 ncrna:miRNA chromosome:GRCh37:3:125409100:125409187:1 gene:ENSG00000266857 gene_biotype:miRNA transcript_biotype:miRNA	chr3	125409100	125409187	+	ENSG00000266857	ENST00000579826	NA	NA	NA	NA	NA	inter
CUST_2089_PI429285431	2.4684634	A	1.9295336	A	1.45289435156377	0	lncRNA	2080-1_{1..249}	"transcript_id ""ENST00000513283.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513283.1"" | genecode_v17"	chr5	 13175958	 13176206	+	ENSG00000248145.1	ENST00000513283.1	CTC-305H11.1	CTC-305H11.1-001	NA	NA	NA	inter
CUST_33388_PI429285431	1.0450393	A	0.92146933	A	1.08942733375924	0	lncRNA	34966-1_{1..1670}	n340107|CR624574|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2566|NULL|1.0128400|-0.3503114	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340107|CR624574|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2566|NULL|1.0128400|-0.3503114	chr10	 96039046	 96040715	-	NA	NA	NA	NA	PLCE1	"hg19_refFlat_PLCE1:range=chr10:95848852-960848375'pad=0,hg19_refFlat_PLCE1:range=chr10:95848852-960848375'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_PLCE1:range=chr10:95790804-960848375'pad=0,hg19_refFlat_PLCE1:range=chr10:95790804-960848375'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00chr10:96029046-96056827"	NA	inner
LNCA_21_P0003777	2.8730729	A	2.022732	A	1.802926895473	0	lncRNA	TCONS_00008592	NA	NA	NA	NA	XLOC_004099	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004099), lincRNA [TCONS_00008592]"	chr4:140522532-140522473	hs|4q31.1	Agilent_HUMAN_G3V2	TCONS_00008592	TCONS_00008592	chr4	140522473	140522532	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41429_PI429285431	0.9246815	A	0.9201213	A	1.00316589065256	0	lncRNA	42589-1_{1..111}	ENST00000580936 ncrna:miRNA chromosome:GRCh37:9:94398533:94398643:1 gene:ENSG00000266855 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580936 ncrna:miRNA chromosome:GRCh37:9:94398533:94398643:1 gene:ENSG00000266855 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 94398533	 94398643	+	ENSG00000266855	ENST00000580936	NA	NA	NA	NA	NA	inter
CUST_17983_PI429285431	0.91718507	A	1.2439128	A	0.797342939439526	0	lncRNA	19716-1_{1..448}	lnc-PDE10A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE10A-1:1	chr6	166190062	166190509	-	lnc-PDE10A-1	lnc-PDE10A-1:1	XLOC_005916	linc-PDE10A-2	NA	NA	NA	inter
CUST_10915_PI429285431	0.91466117	A	0.9052598	A	1.006537811907	0	lncRNA	12459-1_{1..473}	lnc-CD83-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD83-3:3	chr6	 14512175	 14512647	+	lnc-CD83-3	lnc-CD83-3:3	XLOC_005181	linc-JARID2-3	NA	NA	NA	inter
CUST_28830_PI429285431	0.9284729	A	0.9114757	A	1.01185123721189	0	lncRNA	30538-1_{1..473}	n326243|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000089347|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000089347|-1.1755100|-0.3917927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326243|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000089347|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000089347|-1.1755100|-0.3917927	chr1	210893963	210894435	-	NA	NA	NA	NA	KCNH1	NA	chr1:210883963-210915399	inner
CUST_5716_PI429285431	5.5072846	P	5.8020186	P	0.815222626971358	0	lncRNA	5640-1_{1..343}	"transcript_id ""ENST00000573222.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000573222.1"" | genecode_v17"	chr17	  6897961	  6898303	-	ENSG00000262089.1	ENST00000573222.1	RP11-589P10.5	RP11-589P10.5-001	ALOX12	NA	chr17:6899384-6908508	inter
CUST_18624_PI429285431	4.1238546	P	4.2973094	P	0.886716729545859	0	lncRNA	20329-1_{1..565}	lnc-GNAT1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNAT1-1:6	chr3	 50252085	 50252649	+	lnc-GNAT1-1	lnc-GNAT1-1:6	ENSG00000188338	SLC38A3	SLC38A3	NA	chr3:50242692-50258406	inner
CUST_28833_PI429285431	0.9288762	A	0.97512877	A	0.968448629842497	0	lncRNA	30541-1_{1..362}	n326246|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090181|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090181|-1.2522300|-0.3496134	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326246|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090181|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090181|-1.2522300|-0.3496134	chr1	210465244	210465605	-	NA	NA	NA	NA	HHAT	NA	chr1:210477021-210488942	inter
CUST_10504_PI429285431	5.842327	P	5.8557043	P	0.990770418709012	0	lncRNA	12030-2_{3001..3662}	lnc-PANK1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-PANK1-2:3	chr10	 91460527	 91461188	-	lnc-PANK1-2	lnc-PANK1-2:3	XLOC_008897	linc-PANK1-2	KIF20B	NA	chr10:91461367-91467685	inter
CUST_45445_PI429285431	1.1690037	A	0.9655186	A	1.15147660529547	0	lncRNA	49862-2_{3001..3477}	"gi|297374819|ref|NR_033701.1| Homo sapiens allograft inflammatory factor 1-like (AIF1L), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|297374819|ref|NR_033701.1| Homo sapiens allograft inflammatory factor 1-like (AIF1L), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_033701.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008500	2.8224564	A	3.4256306	P	0.658303968502287	0	lncRNA	TCONS_00022897	NA	NA	NA	NA	XLOC_011151	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011151), lincRNA [TCONS_00022897]"	chr14:105509288-105506822	hs|14q32.33	Agilent_HUMAN_G3V2	TCONS_00022897	TCONS_00022897	chr14	105506822	105509288	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47034_PI429285431	14.636449	P	14.655291	P	0.987024636195165	0	lncRNA	51124-1_{1..439}	"gi|283945465|ref|NR_033242.1| Homo sapiens PET100 homolog (S. cerevisiae) (PET100), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|283945465|ref|NR_033242.1| Homo sapiens PET100 homolog (S. cerevisiae) (PET100), transcript variant 2, non-coding RNA"	Chr19	  7694671	  7695109	+	100131801	NR_033242.1	NA	NA	NA	NA	NA	inter
CUST_14764_PI429285431	3.0293713	A	3.4175344	P	0.764101872021473	0	lncRNA	16425-1_{1..652}	lnc-NVL-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NVL-3:1	chr1	224298465	224299116	-	lnc-NVL-3	lnc-NVL-3:1	XLOC_001224	linc-TP53BP2-4	FBXO28	NA	chr1:224301791-224308709	inter
CUST_34770_PI429285431	0.9174924	A	1.6994956	A	0.581558730833952	0	lncRNA	36210-1_{1..3000}	n341680|AK125920|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4151|NULL|-0.2987310|-0.2022492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341680|AK125920|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4151|NULL|-0.2987310|-0.2022492	chr9	 34665492	 34668491	+	NA	NA	NA	NA	IL11RA	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.52;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60chr9:34655492-34661884"	NA	inter
CUST_15563_PI429285431	6.1395793	P	6.256687	P	0.922034283684873	0	lncRNA	17248-1_{1..228}	lnc-GMDS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GMDS-1:1	chr6	  2273079	  2273306	-	lnc-GMDS-1	lnc-GMDS-1:1	XLOC_005578	linc-GMDS	NA	NA	NA	inter
LNCA_21_P0009679	0.99045706	A	0.9279114	A	1.04430683327607	0	lncRNA	TCONS_00026882	NA	NA	NA	NA	XLOC_012945	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012945), lincRNA [TCONS_00026882]"	chr19:8009243-8014232	hs|19p13.2	Agilent_HUMAN_G3V2	TCONS_00026882	TCONS_00026882	chr19	  8009243	  8014232	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51628_PI429285431	5.9619617	P	6.1729646	P	0.863936450776698	0	lncRNA	55199-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00010785 range=chr17:41999868-42016280 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010785 range=chr17:41999868-42016280 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 41999868	 42002867	+	NA	NA	NA	NA	PPY	"hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0,hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.90;hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0,hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0,hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0,hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0,hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0,hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.90chr17:42018172-42019833"	NA	inter
CUST_1776_PI429285431	4.4397726	P	4.5727687	P	0.911935630728321	0	lncRNA	1762-1_{1..783}	"transcript_id ""ENST00000511962.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511962.1"" | genecode_v17"	chr4	 58357556	 58358338	+	ENSG00000251459.1	ENST00000511962.1	RP11-319E12.2	RP11-319E12.2-001	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00"	NA	inter
CUST_25481_PI429285431	7.2565837	P	7.446452	P	0.87668574809918	0	lncRNA	27011-1_{1..671}	lnc-C14orf38-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C14orf38-1:1	chr14	 59992000	 59992670	-	lnc-C14orf38-1	lnc-C14orf38-1:1	ENSG00000258782.2	RP11-701B16.2	C14orf38	NA	chr14:59982000-60002155	inner
CUST_29259_PI429285431	15.27131	P	15.394213	P	0.91833790492823	0	lncRNA	31010-1_{1..422}	n332357|EU872208|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558231|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558231|-1.1804500|-0.0493386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332357|EU872208|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558231|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558231|-1.1804500|-0.0493386	chr19	 51220174	 51220595	-	NA	NA	NA	NA	SHANK1	NA	chr19:51210174-51220195	inner
LNCA_21_P0008115	0.9926342	A	0.92701226	A	1.04653599999938	0	lncRNA	TCONS_00021898	NA	NA	NA	NA	XLOC_010491	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010491), lincRNA [TCONS_00021898]"	chr13:109940098-109940157	hs|13q33.3	Agilent_HUMAN_G3V2	TCONS_00021898	TCONS_00021898	chr13	109940098	109940157	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2750_PI429285431	1.5733885	A	1.8043445	A	0.852070081517475	0	lncRNA	2734-1_{1..608}	"transcript_id ""ENST00000443103.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443103.1"" | genecode_v17"	chr7	  2423756	  2424363	+	ENSG00000230914.2	ENST00000443103.1	AC004840.8	AC004840.8-001	EIF3B	NA	chr7:2413756-2420380	inter
CUST_23612_PI429285431	3.97197	P	3.8868597	P	1.06076883843101	0	lncRNA	25179-1_{1..2440}	lnc-CDIPT-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CDIPT-1:6	chr16	 29821356	 29823795	-	lnc-CDIPT-1	lnc-CDIPT-1:6	ENSG00000238045.4	AC009133.14	MAZ	"hg19_refFlat_MAZ:range=chr16:29818023-298215525'pad=0,hg19_refFlat_MAZ:range=chr16:29818023-298215525'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.00;hg19_refFlat_MAZ:range=chr16:29818023-298210635'pad=0,hg19_refFlat_MAZ:range=chr16:29818023-298210635'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30chr16:29817855-29822504"	NA	inner
CUST_35076_PI429285431	1.8708637	A	1.172966	A	1.6221392828719	0	lncRNA	36486-1_{1..2024}	n342030|AK094730|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4511|NULL|0.5025070|-0.2446258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342030|AK094730|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4511|NULL|0.5025070|-0.2446258	chr12	117293949	117295972	-	NA	NA	NA	NA	RNFT2	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60chr12:117283949-117291436"	NA	inter
CUST_36423_PI429285431	0.91466814	A	0.9099157	A	1.00329957202978	0	lncRNA	37639-1_{1..3000}	n344938|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_487|NULL|-1.5632600|-0.2899182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344938|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_487|NULL|-1.5632600|-0.2899182	chr7	 30222186	 30225185	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30"	NA	inter
CUST_40052_PI429285431	0.9058318	A	0.8985987	A	1.00502619200877	0	lncRNA	40905-1_{1..1805}	n407256|NR_026717_6|lncRNA|Homosapiens||RefGeneNoncode|NR_026717_6||-1.1558000|-0.2387073	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407256|NR_026717_6|lncRNA|Homosapiens||RefGeneNoncode|NR_026717_6||-1.1558000|-0.2387073	chr6	  3448707	  3450511	+	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_SLC22A23:range=chr6:3273289-34567935'pad=0,hg19_refFlat_SLC22A23:range=chr6:3273289-34567935'pad=0 3'pad=0 strand=- repeatMasking=none,-99.10chr6:3438707-3456793"	NA	inner
CUST_49603_PI429285431	4.777028	P	4.456445	P	1.24883510721659	0	lncRNA	53393-1_{1..216}	hg19_lincRNAsTranscripts_TCONS_l2_00025018 range=chr6:161176480-161178657 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025018 range=chr6:161176480-161178657 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	161176480	161176695	-	NA	NA	NA	NA	PLG	NA	chr6:161166480-161175086	inter
CUST_39787_PI429285431	1.1068932	A	1.240622	A	0.911472604535191	0	lncRNA	40700-1_{1..3000}	n406126|NR_003525|lncRNA|Homosapiens||RefGeneNoncode|NR_003525||11.2118000|-0.2319170	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406126|NR_003525|lncRNA|Homosapiens||RefGeneNoncode|NR_003525||11.2118000|-0.2319170	chr10	 27534781	 27537780	-	NA	NA	NA	NA	ACBD5	NA	chr10:27524781-27531068	inter
CUST_22520_PI429285431	8.680338	P	8.505913	P	1.12851453482796	0	lncRNA	24107-1_{1..490}	lnc-ZSCAN10-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZSCAN10-3:10	chr16	  3179249	  3179738	-	lnc-ZSCAN10-3	lnc-ZSCAN10-3:10	ENSG00000263072.1	RP11-473M20.14	ZNF213	NA	chr16:3185057-3189300	inter
CUST_23499_PI429285431	0.92839766	A	0.9228421	A	1.00385824468702	0	lncRNA	25066-1_{1..1177}	lnc-TRPM6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRPM6-1:1	chr9	 77113158	 77114334	-	lnc-TRPM6-1	lnc-TRPM6-1:1	ENSG00000224825.1	RP11-171A24.3	RORB	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60chr9:77112252-77124043"	NA	inner
CUST_49379_PI429285431	1.5697783	A	0.9224214	A	1.56629602152246	0	lncRNA	53193-1_{1..626}	hg19_lincRNAsTranscripts_TCONS_l2_00023087 range=chr5:126383180-126409152 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023087 range=chr5:126383180-126409152 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	126383180	126383805	-	NA	NA	NA	NA	C5orf63	NA	chr5:126378250-126409184	inner
CUST_40677_PI429285431	2.0946112	A	1.905807	A	1.13981856805073	0	lncRNA	41412-1_{1..599}	n410234|NR_037171_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037171_3||-1.1387400|-0.4107908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410234|NR_037171_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037171_3||-1.1387400|-0.4107908	chr6	  3399751	  3400349	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3389751-3411315	inner
CUST_40144_PI429285431	4.860927	P	5.018355	P	0.896622122012626	0	lncRNA	40982-1_{1..3000}	n407766|NR_027287|lncRNA|Homosapiens||RefGeneNoncode|NR_027287||0.1748390|-0.0990199	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407766|NR_027287|lncRNA|Homosapiens||RefGeneNoncode|NR_027287||0.1748390|-0.0990199	chr20	 62584736	 62587735	+	NA	NA	NA	NA	UCKL1	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_UCKL1:range=chr20:62571329-625877255'pad=0,hg19_refFlat_UCKL1:range=chr20:62571329-625877255'pad=0 3'pad=0 strand=- repeatMasking=none,-103.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10chr20:62574736-62587800"	NA	inter
CUST_22441_PI429285431	0.9209524	A	1.302674	A	0.767521143935342	0	lncRNA	24028-3_{6001..6087}	lnc-SNURF-3:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SNURF-3:18	chr15	 25624669	 25624755	+	lnc-SNURF-3	lnc-SNURF-3:18	ENSG00000224078.4	SNHG14	SNRPN	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30chr15:25608669-25630623"	NA	inner
CUST_2927_PI429285431	4.6476717	P	4.8729444	P	0.85543331533704	0	lncRNA	2908-1_{1..1114}	"transcript_id ""ENST00000605836.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605836.1"" | genecode_v17"	chr7	128307097	128308210	+	ENSG00000271553.1	ENST00000605836.1	RP11-274B21.10	RP11-274B21.10-001	FAM71F2	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60chr7:128312346-128318210"	NA	inter
CUST_316_PI429201921	0.9115836	A	0.90804636	A	1.00245483612109	0	lncRNA	213-3_{6001..7390}	TC16001572.hg.1	TCONS_l2_00009765-XLOC_l2_005236 // Broad TUCP // linc-GNAO1-2 chr16:+:55819980-55827371 // chr16 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr16:+:55819980-55827371	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00009765-XLOC_l2_005236	linc-GNAO1-2	chr16	 55819980	 55827371	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7417_PI429285431	0.92894185	A	1.1693971	A	0.846478159583402	0	lncRNA	9060-1_{1..2184}	lnc-FAM49B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM49B-1:1	chr8	131239735	131241918	-	lnc-FAM49B-1	lnc-FAM49B-1:1	ENSG00000248594	ENST00000507132	ASAP1	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.01;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10chr8:131229735-131249794"	NA	inner
CUST_37799_PI429285431	2.8475115	A	3.6076438	P	0.590442182692908	0	lncRNA	38892-1_{1..3000}	n346308|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1858|NULL|-1.3218100|-0.2109306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346308|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1858|NULL|-1.3218100|-0.2109306	chr4	 15920181	 15923180	+	NA	NA	NA	NA	NA	"hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20"	NA	inter
CUST_32081_PI429285431	6.6674757	P	5.671245	P	1.99478146081876	0	lncRNA	33788-1_{1..1375}	n338644|BC024029|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1058|NULL|-1.2553600|-0.2377767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n338644|BC024029|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1058|NULL|-1.2553600|-0.2377767	chr13	 33383327	 33384701	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00"	NA	inter
CUST_50330_PI429285431	9.437604	P	10.115643	P	0.625014255216348	0	lncRNA	54048-1_{1..859}	hg19_lincRNAsTranscripts_TCONS_l2_00029059 range=chr9:132096183-132109733 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029059 range=chr9:132096183-132109733 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132096183	132097041	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00"	NA	inter
CUST_2229_PI429285431	0.9266696	A	0.9140337	A	1.00879700668326	0	lncRNA	2221-1_{1..767}	"transcript_id ""ENST00000515706.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515706.1"" | genecode_v17"	chr5	 85676478	 85677244	-	ENSG00000250124.1	ENST00000515706.1	CTC-261N6.2	CTC-261N6.2-001	NA	NA	NA	inter
CUST_28023_PI429285431	2.108968	A	1.6737661	A	1.35210004134283	0	lncRNA	29638-1_{1..2928}	n325285|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327471|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327471|-0.3784690|-0.3695574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325285|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327471|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327471|-0.3784690|-0.3695574	chr2	 64982477	 64985404	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43867_PI429285431	4.06544	P	3.4193213	P	1.56495231708563	0	lncRNA	48588-1_{1..469}	"gi|341915147|ref|XR_132704.1| PREDICTED: Homo sapiens uncharacterized LOC100652991 (LOC100652991), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915147|ref|XR_132704.1| PREDICTED: Homo sapiens uncharacterized LOC100652991 (LOC100652991), misc_RNA"	NA	NA	NA	NA	NA	XR_132704.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004374	0.9522357	A	0.91657203	A	1.02502824910078	0	lncRNA	TCONS_00010293	NA	NA	NA	NA	XLOC_004766	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004766), lincRNA [TCONS_00010293]"	chr5:30101945-30101586	hs|5p13.3	Agilent_HUMAN_G3V2	TCONS_00010293	TCONS_00010293	chr5	 30101586	 30101945	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33627_PI429285431	2.2636864	A	2.3815157	A	0.921573220497721	0	lncRNA	35192-1_{1..236}	n340388|AF056431|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2849|NULL|-1.2381500|-0.2698992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340388|AF056431|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2849|NULL|-1.2381500|-0.2698992	chr5	 10692800	 10693035	+	NA	NA	NA	NA	DAP	NA	chr5:10682800-10703036	inner
CUST_5559_PI429285431	0.9094214	A	0.90156424	A	1.00546102563539	0	lncRNA	5489-1_{1..553}	"transcript_id ""ENST00000569037.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569037.1"" | genecode_v17"	chr16	 55461470	 55462022	-	ENSG00000260135.2	ENST00000569037.1	RP11-212I21.2	RP11-212I21.2-001	NA	NA	NA	inter
CUST_21349_PI429285431	5.5880427	P	5.6902866	P	0.931582923888908	0	lncRNA	22973-1_{1..447}	lnc-TRIM63-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM63-1:5	chr1	 26497029	 26497475	-	lnc-TRIM63-1	lnc-TRIM63-1:5	ENSG00000236782.1	RP11-96L14.7	CNKSR1	"hg19_refFlat_ZNF593:range=chr1:26496475-264972075'pad=0,hg19_refFlat_ZNF593:range=chr1:26496475-264972075'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.00chr1:26503981-26507304"	NA	inner
CUST_28510_PI429285431	0.9858289	A	0.9116776	A	1.05274155326263	0	lncRNA	30179-1_{1..450}	n325855|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051006|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051006|-1.3016600|-0.2290570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325855|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051006|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051006|-1.3016600|-0.2290570	chr10	130601132	130601581	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48755_PI429285431	5.2558136	P	5.496398	P	0.846402386285457	0	lncRNA	52592-1_{1..719}	hg19_lincRNAsTranscripts_TCONS_l2_00014935 range=chr2:139658590-139659807 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014935 range=chr2:139658590-139659807 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	139658590	139659308	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12136_PI429285431	0.92815393	A	1.3957359	A	0.723175661632809	0	lncRNA	13733-1_{1..882}	lnc-CDH3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH3-3:1	chr16	 68644924	 68645805	+	lnc-CDH3-3	lnc-CDH3-3:1	XLOC_011767	linc-CDH3-2	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70"	NA	inter
CUST_3005_PI429285431	0.9665488	A	0.9261631	A	1.02838872641226	0	lncRNA	2984-1_{1..545}	"transcript_id ""ENST00000524047.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524047.1"" | genecode_v17"	chr8	 10332075	 10332619	+	ENSG00000253641.1	ENST00000524047.1	RP11-981G7.2	RP11-981G7.2-001	PRSS55	NA	chr8:10332392-10349484	inter
CUST_44011_PI429285431	5.051898	P	3.1816561	P	3.65593874919856	0	lncRNA	48701-1_{1..3000}	"gi|371118923|ref|NR_045771.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 10, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371118923|ref|NR_045771.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 10, non-coding RNA"	Chr2	175936978	175939977	-	1386	NR_045771.1	NA	NA	NA	NA	NA	inter
CUST_9145_PI429285431	3.010952	A	3.672275	P	0.632298192274667	0	lncRNA	10664-1_{1..786}	lnc-TMPRSS11E-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMPRSS11E-1:4	chr4	 68586140	 68586925	+	lnc-TMPRSS11E-1	lnc-TMPRSS11E-1:4	ENSG00000248049	RP11-453E17.1	GNRHR	"hg19_refFlat_ST3GAL1:range=chr8:134472007-1344882675'pad=0,hg19_refFlat_ST3GAL1:range=chr8:134472007-1344882675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30chr4:68590944-68596736"	NA	inter
CUST_16175_PI429285431	1.9097614	A	1.9988154	A	0.940139012496434	0	lncRNA	17881-1_{1..3000}	lnc-MANEA-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MANEA-3:6	chr6	 94453834	 94456833	+	lnc-MANEA-3	lnc-MANEA-3:6	XLOC_005392	linc-MANEA-3	NA	NA	NA	inter
CUST_31898_PI429285431	7.1149554	P	7.1146812	P	1.00019007901964	0	lncRNA	33629-1_{1..277}	n338452|BC033874|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|849|NULL|-0.5935250|-0.2119660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338452|BC033874|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|849|NULL|-0.5935250|-0.2119660	chr1	201433510	201433786	-	NA	NA	NA	NA	PHLDA3	NA	chr1:201434622-201438299	inter
CUST_28467_PI429285431	0.8919012	A	2.2299678	A	0.395550390140374	0	lncRNA	30133-1_{1..677}	n325801|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000106493|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000106493|-1.1680800|-0.1175033	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325801|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000106493|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000106493|-1.1680800|-0.1175033	chr13	 20759544	 20760220	+	NA	NA	NA	NA	GJB2	NA	chr13:20761602-20767114	inner
CUST_641_PI429285431	0.9190102	A	1.0741894	A	0.898020821016488	0	lncRNA	633-1_{1..549}	"transcript_id ""ENST00000431911.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431911.1"" | genecode_v17"	chr2	   388412	   388960	+	ENSG00000236856.1	ENST00000431911.1	AC105393.1	AC105393.1-001	NA	NA	NA	inter
CUST_50391_PI429285431	0.894475	A	0.8951262	A	0.999548724411492	0	lncRNA	54097-2_{3001..3562}	hg19_lincRNAsTranscripts_TCONS_l2_00030394 range=chrX:149116253-149187439 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030394 range=chrX:149116253-149187439 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	149119253	149119814	+	NA	NA	NA	NA	CXorf40B	NA	chrX:149106253-149106716	inter
CUST_40927_PI429285431	1.1669359	A	0.8964251	A	1.20623483109145	0	lncRNA	41611-1_{1..1170}	n410813|NR_038267|lncRNA|Homosapiens||RefGeneNoncode|NR_038267||8.6730000|-0.0569853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410813|NR_038267|lncRNA|Homosapiens||RefGeneNoncode|NR_038267||8.6730000|-0.0569853	chr19	 46242887	 46244056	+	NA	NA	NA	NA	SIX5	NA	chr19:46268043-46272497	inter
CUST_37982_PI429285431	7.001464	P	6.6625953	P	1.26476443062068	0	lncRNA	39069-1_{1..1415}	n346537|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2087|NULL|-1.3048900|-0.3247916	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346537|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2087|NULL|-1.3048900|-0.3247916	chr13	 52743124	 52744538	-	NA	NA	NA	NA	NEK3	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10chr13:52733124-52733996"	NA	inter
CUST_50890_PI429285431	1.1512814	A	1.4573668	A	0.808833468234137	0	lncRNA	54533-1_{1..2092}	hg19_lincRNAsTranscripts_TCONS_l2_00005718 range=chr12:64215703-64227164 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005718 range=chr12:64215703-64227164 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 64215703	 64217794	+	NA	NA	NA	NA	SRGAP1	NA	chr12:64215524-64237164	inter
CUST_16168_PI429285431	0.91686994	A	0.91763604	A	0.999469120911169	0	lncRNA	17875-1_{1..3000}	lnc-ZNF727-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF727-7:2	chr7	 63175861	 63178860	+	lnc-ZNF727-7	lnc-ZNF727-7:2	XLOC_006118	linc-ZNF727-5	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-11.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
CUST_31735_PI429285431	1.1166239	A	1.7728965	A	0.634515538751971	0	lncRNA	33476-1_{1..1610}	n338270|CR612330|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|663|NULL|-1.1990800|-0.2476483	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338270|CR612330|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|663|NULL|-1.1990800|-0.2476483	chr19	  2949032	  2950641	-	NA	NA	NA	NA	ZNF77	NA	chr19:2939032-2944969	inter
CUST_42961_PI429285431	4.439363	P	4.285323	P	1.11268097022426	0	lncRNA	46098-1_{1..93}	ENST00000515895 ncrna:snoRNA chromosome:GRCh37:2:16380471:16380563:1 gene:ENSG00000251704 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515895 ncrna:snoRNA chromosome:GRCh37:2:16380471:16380563:1 gene:ENSG00000251704 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 16380471	 16380563	+	ENSG00000251704	ENST00000515895	NA	NA	NA	NA	NA	inter
CUST_44613_PI429285431	0.91317666	A	0.9068745	A	1.00437787947273	0	lncRNA	49185-1_{1..3000}	"gi|400974228|ref|NR_073101.1| Homo sapiens janus kinase and microtubule interacting protein 2 (JAKMIP2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|400974228|ref|NR_073101.1| Homo sapiens janus kinase and microtubule interacting protein 2 (JAKMIP2), transcript variant 4, non-coding RNA"	Chr5	146965002	146968001	-	9832	NR_073101.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_19572_PI429285431	0.92887396	A	0.99490136	A	0.955264793598857	0	lncRNA	21228-1_{1..557}	lnc-DOCK4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DOCK4-2:1	chr7	110365758	110366314	-	lnc-DOCK4-2	lnc-DOCK4-2:1	ENSG00000228540.1	IMMP2L-IT1	IMMP2L	NA	chr7:110355758-110375881	inner
CUST_40689_PI429285431	0.9150167	A	0.91116154	A	1.00267576677539	0	lncRNA	41424-1_{1..549}	n410247|NR_037172_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037172_8||0.3465140|-0.2624454	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410247|NR_037172_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037172_8||0.3465140|-0.2624454	chr6	  3591245	  3591793	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00"	NA	inter
CUST_13919_PI429285431	0.920705	A	0.92682374	A	0.995767793754238	0	lncRNA	15568-1_{1..3000}	lnc-EIF2AK4-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-EIF2AK4-2:9	chr15	 40357422	 40360421	+	lnc-EIF2AK4-2	lnc-EIF2AK4-2:9	XLOC_011219	linc-BUB1B	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-23.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-32.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_45361_PI429285431	3.6679034	P	4.379558	P	0.610619429087497	0	lncRNA	49798-1_{1..536}	"gi|211938430|ref|NR_015423.1| Homo sapiens PGM5 antisense RNA 1 (PGM5-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|211938430|ref|NR_015423.1| Homo sapiens PGM5 antisense RNA 1 (PGM5-AS1), non-coding RNA"	NW_003871067.1	   134637	   135172	-	572558	NR_015423.1	NA	NA	NA	NA	NA	Unknown
CUST_26416_PI429285431	3.572829	P	3.6826098	P	0.926728856395167	0	lncRNA	27923-1_{1..668}	lnc-EXOSC6-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EXOSC6-3:6	chr16	 70051950	 70052617	-	lnc-EXOSC6-3	lnc-EXOSC6-3:6	ENSG00000196696.7	PDXDC2P	NA	NA	NA	inter
LNCA_21_P0010379	3.2896073	P	3.1882365	P	1.07279230936658	0	lncRNA	ENST00000446543	NA	NA	NA	NA	XLOC_014349	NA	ENST00000446543	THC2707099	NA	"BROAD Institute lincRNA (XLOC_014349), lincRNA [TCONS_00029472]"	chr22:32739026-32723393	hs|22q12.3	Agilent_HUMAN_G3V2	ENST00000446543	ENST00000446543	chr22	 32723393	 32739026	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40077_PI429285431	0.99484336	A	1.0419956	A	0.96784488993728	0	lncRNA	40924-1_{1..1759}	n407347|NR_026810|lncRNA|Homosapiens||RefGeneNoncode|NR_026810||5.9852200|-0.2777072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407347|NR_026810|lncRNA|Homosapiens||RefGeneNoncode|NR_026810||5.9852200|-0.2777072	chr17	 16692056	 16693814	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12462_PI429285431	0.92920554	A	0.9149437	A	1.0099345776847	0	lncRNA	14074-1_{1..213}	lnc-SEC22A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEC22A-1:1	chr3	122998711	122998923	+	lnc-SEC22A-1	lnc-SEC22A-1:1	XLOC_002788	linc-KALRN-2	SEC22A	NA	chr3:122988711-122992983	inter
CUST_42854_PI429285431	2.2974522	A	2.2739906	A	1.01639529349706	0	lncRNA	45898-1_{1..138}	ENST00000516009 ncrna:snoRNA chromosome:GRCh37:17:26345796:26345933:1 gene:ENSG00000251818 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516009 ncrna:snoRNA chromosome:GRCh37:17:26345796:26345933:1 gene:ENSG00000251818 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 26345796	 26345933	+	ENSG00000251818	ENST00000516009	NA	NA	NA	NA	NA	inter
LNCA_21_P0005613	3.3597631	P	4.132776	P	0.585194088143245	0	lncRNA	TCONS_00014460	NA	NA	NA	NA	XLOC_006677	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006677), lincRNA [TCONS_00014460]"	chr7:157231014-157230955	hs|7q36.3	Agilent_HUMAN_G3V2	TCONS_00014460	TCONS_00014460	chr7	157230955	157231014	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11855_PI429285431	0.92178935	A	0.90805787	A	1.00956337625528	0	lncRNA	13432-1_{1..212}	lnc-P2RY1-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-P2RY1-3:8	chr3	152455433	152455644	+	lnc-P2RY1-3	lnc-P2RY1-3:8	XLOC_002878	linc-P2RY1-2	NA	NA	NA	inter
LNCA_21_P0001839	1.556126	A	0.91270745	A	1.56202608942131	0	lncRNA	ENST00000431697	NA	NA	NA	NA	XLOC_001375	NA	ENST00000431697	NA	NA	"BROAD Institute lincRNA (XLOC_001375), lincRNA [TCONS_00002841]"	chr2:18968959-18969018	hs|2p24.2	Agilent_HUMAN_G3V2	ENST00000431697	ENST00000431697	chr2	 18968959	 18969018	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9091_PI429285431	8.162362	P	8.241571	P	0.9465764928866	0	lncRNA	10612-1_{1..751}	lnc-TAF12-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TAF12-1:5	chr1	 28908102	 28908852	-	lnc-TAF12-1	lnc-TAF12-1:5	ENSG00000197989	SNHG12	TRNAU1AP	NA	chr1:28898102-28905057	inter
CUST_28596_PI429285431	2.105747	A	1.812873	A	1.22507833312363	0	lncRNA	30277-1_{1..581}	n325958|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048270|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048270|-1.3338100|-0.3482331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325958|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048270|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048270|-1.3338100|-0.3482331	chr10	 66332890	 66333470	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50887_PI429285431	0.9263874	A	1.2195499	A	0.816111117141743	0	lncRNA	54530-1_{1..406}	hg19_lincRNAsTranscripts_TCONS_l2_00006290 range=chr12:58993786-59175494 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006290 range=chr12:58993786-59175494 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 58993786	 58994191	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25021_PI429285431	7.0774474	P	7.3129888	P	0.849366197769982	0	lncRNA	26561-1_{1..455}	lnc-HERC1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HERC1-1:9	chr15	 63881028	 63881482	-	lnc-HERC1-1	lnc-HERC1-1:9	ENSG00000259248.1	RP11-265M18.2	USP3	"hg19_refFlat_USP3:range=chr15:63796939-638830255'pad=0,hg19_refFlat_USP3:range=chr15:63796939-638830255'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30chr15:63871028-63883663"	NA	inter
CUST_1018_PI429285431	0.9216501	A	0.92344105	A	0.998759378265211	0	lncRNA	1007-1_{1..388}	"transcript_id ""ENST00000424355.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424355.1"" | genecode_v17"	chr2	108665656	108666043	-	ENSG00000231221.1	ENST00000424355.1	AC023672.2	AC023672.2-001	NA	NA	NA	inter
CUST_43092_PI429285431	5.171039	P	5.689226	P	0.698248754395754	0	lncRNA	47394-1_{1..126}	ENST00000408600 ncrna:snRNA chromosome:GRCh37:8:101752030:101752155:-1 gene:ENSG00000221527 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408600 ncrna:snRNA chromosome:GRCh37:8:101752030:101752155:-1 gene:ENSG00000221527 gene_biotype:snRNA transcript_biotype:snRNA	chr8	101752030	101752155	-	ENSG00000221527	ENST00000408600	NA	NA	NA	NA	NA	inter
CUST_12121_PI429285431	0.9188856	A	2.35782	A	0.368839635195467	0	lncRNA	13717-1_{1..927}	lnc-ROCK2-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ROCK2-3:6	chr2	 11239920	 11240846	-	lnc-ROCK2-3	lnc-ROCK2-3:6	XLOC_001987	linc-PDIA6	C2orf50	NA	chr2:11242249-11250188	inter
CUST_50151_PI429285431	5.8185725	P	4.2194757	P	3.02953589663555	0	lncRNA	53876-1_{1..684}	hg19_lincRNAsTranscripts_TCONS_l2_00029177 range=chr9:2535669-2559322 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029177 range=chr9:2535669-2559322 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	  2535669	  2536352	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49402_PI429285431	0.90617824	A	0.8997445	A	1.00446948723765	0	lncRNA	53211-2_{3001..3980}	hg19_lincRNAsTranscripts_TCONS_l2_00022644 range=chr5:175545619-175554278 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022644 range=chr5:175545619-175554278 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	175548619	175549598	+	NA	NA	NA	NA	FAM153B	"hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-61.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00chr5:175535619-175543458"	NA	inter
CUST_25681_PI429285431	0.91748166	A	1.1279048	A	0.864283701191174	0	lncRNA	27210-1_{1..623}	lnc-ZNF852-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF852-1:1	chr3	 44666214	 44666836	-	lnc-ZNF852-1	lnc-ZNF852-1:1	ENSG00000233509.2	ZNF197-AS1	ZNF197	NA	chr3:44666511-44676289	inter
CUST_48159_PI429285431	4.4102015	P	4.1320443	P	1.21264494497516	0	lncRNA	52024-1_{1..2289}	"gi|310112854|ref|XR_111561.1| PREDICTED: Homo sapiens uncharacterized LOC100507759 (LOC100507759), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310112854|ref|XR_111561.1| PREDICTED: Homo sapiens uncharacterized LOC100507759 (LOC100507759), misc_RNA"	NA	NA	NA	NA	NA	XR_111561.1	NA	NA	NA	NA	NA	Unknown
CUST_34629_PI429285431	8.9896145	P	9.640976	P	0.636679183248438	0	lncRNA	36082-1_{1..462}	n341521|AF088033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3991|NULL|-1.2592000|-0.4106621	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341521|AF088033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3991|NULL|-1.2592000|-0.4106621	chr8	 67540721	 67541182	-	NA	NA	NA	NA	VCPIP1	NA	chr8:67542488-67551175	inter
CUST_8137_PI429285431	6.9794016	P	7.102806	P	0.918018797557905	0	lncRNA	9740-1_{1..1724}	lnc-KIAA1147-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1147-2:1	chr7	141437998	141439721	-	lnc-KIAA1147-2	lnc-KIAA1147-2:1	ENSG00000228775	RP5-894A10.5	WEE2	"hg19_refFlat_WEE2:range=chr7:141408559-1414301205'pad=0,hg19_refFlat_WEE2:range=chr7:141408559-1414301205'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60chr7:141427998-141431071"	NA	inter
CUST_8621_PI429285431	0.91359043	A	0.90576565	A	1.00543845921509	0	lncRNA	10173-2_{3001..4047}	lnc-STARD9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-STARD9-1:1	chr15	 43037200	 43038246	+	lnc-STARD9-1	lnc-STARD9-1:1	ENSG00000246283	AC090510.1	TTBK2	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr15:43036536-43044389"	NA	inter
CUST_16750_PI429285431	0.9301801	A	0.9239991	A	1.00429353364032	0	lncRNA	18457-1_{1..874}	lnc-MIB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MIB1-1:1	chr18	 19495910	 19496783	+	lnc-MIB1-1	lnc-MIB1-1:1	XLOC_012637	linc-GATA6	NA	NA	NA	inter
CUST_32116_PI429285431	8.654155	P	7.020578	P	3.1028135348868	0	lncRNA	33817-2_{3001..4221}	n338680|D87119|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1096|NULL|2.3480000|-0.2070465	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n338680|D87119|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1096|NULL|2.3480000|-0.2070465	chr2	 12860207	 12861427	+	NA	NA	NA	NA	TRIB2	NA	chr2:12856998-12882860	inter
LNCA_23_P64280	0.9309938	A	0.92491823	A	1.00422014404968	0	lncRNA	XR_110533	XR_110533	XR_110533	100130428	Hs.661469	LOC100130428	IGYY565	NA	THC2479550	NA	"PREDICTED: Homo sapiens IGYY565 (LOC100130428), miscRNA [XR_110533]"	chr11:124659533-124659474	hs|11q24.2	Agilent_HUMAN_G3V2	XR_110533	XR_110533	chr11	124659474	124659533	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004290	5.738057	P	5.7227583	P	1.01066067510801	0	lncRNA	TCONS_00010079	NA	NA	NA	NA	XLOC_004536	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004536), lincRNA [TCONS_00010079]"	chr5:124317837-124317896	hs|5q23.2	Agilent_HUMAN_G3V2	TCONS_00010079	TCONS_00010079	chr5	124317837	124317896	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49182_PI429285431	1.2912786	A	0.9046968	A	1.30729234334949	0	lncRNA	53006-1_{1..342}	hg19_lincRNAsTranscripts_TCONS_l2_00021734 range=chr4:144481280-144570458 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021734 range=chr4:144481280-144570458 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	144481280	144481621	+	NA	NA	NA	NA	SMARCA5	NA	chr4:144471280-144478642	inner
CUST_46476_PI429285431	1.6293122	A	1.3127437	A	1.24536487993234	0	lncRNA	50674-1_{1..3000}	"gi|310123316|ref|XR_109205.1| PREDICTED: Homo sapiens uncharacterized LOC100128979 (LOC100128979), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310123316|ref|XR_109205.1| PREDICTED: Homo sapiens uncharacterized LOC100128979 (LOC100128979), misc_RNA"	NA	NA	NA	NA	NA	XR_109205.1	NA	NA	NA	"hg19_refFlat_TPM1:range=chr15:63340775-633621425'pad=0,hg19_refFlat_TPM1:range=chr15:63340775-633621425'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.90"	NA	Unknown
CUST_48506_PI429285431	1.5071521	A	1.5212201	A	0.990296194203964	0	lncRNA	52359-1_{1..1480}	hg19_lincRNAsTranscripts_TCONS_l2_00014779 range=chr2:111143733-111169453 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014779 range=chr2:111143733-111169453 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	111143733	111145212	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47195_PI429285431	3.2324855	A	1.3378093	A	3.7183851185045	0	lncRNA	51270-1_{1..3000}	"gi|268607680|ref|NR_030740.1| Homo sapiens zinc finger protein 667 (ZNF667), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|268607680|ref|NR_030740.1| Homo sapiens zinc finger protein 667 (ZNF667), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_030740.1	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60"	NA	Unknown
CUST_31509_PI429285431	6.0159416	P	6.244521	P	0.853474881952999	0	lncRNA	33270-1_{1..2035}	n337993|BC036915|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|379|NULL|14.1672000|-0.1133700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337993|BC036915|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|379|NULL|14.1672000|-0.1133700	chr22	 25202285	 25204319	+	NA	NA	NA	NA	SGSM1	NA	chr22:25202136-25299490	inner
CUST_14795_PI429285431	1.9683945	A	2.9677396	A	0.500227022567925	0	lncRNA	16456-1_{1..2107}	lnc-GPBP1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPBP1-3:2	chr5	 56974816	 56976922	+	lnc-GPBP1-3	lnc-GPBP1-3:2	XLOC_004398	linc-GAPT-1	NA	NA	NA	inter
LNCA_21_P0003360	2.7055473	A	2.4932554	A	1.15852718689691	0	lncRNA	THC2642744	NA	NA	NA	NA	XLOC_003528	NA	NA	THC2642744	NA	"BROAD Institute lincRNA (XLOC_003528), lincRNA [TCONS_00007524]"	chr4:044018957-044019016	hs|4p13	Agilent_HUMAN_G3V2	THC2642744	THC2642744	chr4	 44018957	 44019016	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2395_PI429285431	1.4952966	A	2.1607366	A	0.630496383301818	0	lncRNA	2387-1_{1..399}	"transcript_id ""ENST00000524034.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524034.1"" | genecode_v17"	chr5	151338459	151338857	+	ENSG00000254226.1	ENST00000524034.1	CTB-12O2.1	CTB-12O2.1-004	NA	NA	NA	inter
CUST_50700_PI429285431	14.447921	P	14.479865	P	0.978101438932758	0	lncRNA	54370-1_{1..504}	hg19_lincRNAsTranscripts_TCONS_l2_00003581 range=chr10:54148995-54153749 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003581 range=chr10:54148995-54153749 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 54148995	 54149498	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11953_PI429285431	9.729396	P	10.090475	P	0.77858205580976	0	lncRNA	13533-1_{1..400}	lnc-TPRA1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPRA1-2:3	chr3	127109289	127109688	-	lnc-TPRA1-2	lnc-TPRA1-2:3	XLOC_003239	linc-TXNRD3-2	NA	NA	NA	inter
CUST_39658_PI429285431	4.893824	P	4.177257	P	1.64326710232963	0	lncRNA	40597-1_{1..2783}	n405265|NR_001284_3|lncRNA|Homosapiens||RefGeneNoncode|NR_001284_3||1.4015800|-0.1675420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405265|NR_001284_3|lncRNA|Homosapiens||RefGeneNoncode|NR_001284_3||1.4015800|-0.1675420	chr6	  3269985	  3272767	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3269207-3284708	inner
CUST_12996_PI429285431	4.394633	P	4.8902607	P	0.709253023135464	0	lncRNA	14623-1_{1..1028}	lnc-METTL22-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-METTL22-2:1	chr16	  8363632	  8364659	+	lnc-METTL22-2	lnc-METTL22-2:1	XLOC_011636	linc-C16orf68-1	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10"	NA	inter
CUST_9742_PI429285431	1.6823837	A	2.008998	A	0.797405631943912	0	lncRNA	11259-1_{1..228}	lnc-ATIC-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ATIC-6:1	chr2	216447299	216447526	+	lnc-ATIC-6	lnc-ATIC-6:1	XLOC_001850	linc-TMEM169-5	NA	NA	NA	inter
CUST_48851_PI429285431	4.3249435	P	4.2009277	P	1.08976404694463	0	lncRNA	52687-1_{1..1080}	hg19_lincRNAsTranscripts_TCONS_l2_00020222 range=chr3:150588832-150612332 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020222 range=chr3:150588832-150612332 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	150588832	150589911	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25125_PI429285431	1.013197	A	1.0225677	A	0.993525774412135	0	lncRNA	26663-1_{1..804}	lnc-CNBD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CNBD1-2:1	chr8	 87777021	 87777824	+	lnc-CNBD1-2	lnc-CNBD1-2:1	ENSG00000254115.1	RP11-386D6.1	NA	NA	NA	inter
CUST_27736_PI429285431	0.906628	A	1.126443	A	0.858675539256112	0	lncRNA	29318-1_{1..2326}	n324952|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000258921|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000258921|-1.0849500|-0.2789426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324952|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000258921|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000258921|-1.0849500|-0.2789426	chr20	 49881742	 49884067	-	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
CUST_12373_PI429285431	0.91165304	A	0.90898097	A	1.00185385405337	0	lncRNA	13985-1_{1..1808}	lnc-PAPOLA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAPOLA-1:1	chr14	 97061001	 97062808	+	lnc-PAPOLA-1	lnc-PAPOLA-1:1	XLOC_010920	linc-VRK1-2	NA	"hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40"	NA	inter
CUST_17155_PI429285431	3.5777862	P	4.2878666	P	0.611286071514928	0	lncRNA	18864-1_{1..362}	lnc-CFLAR-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CFLAR-1:2	chr2	202032869	202033230	+	lnc-CFLAR-1	lnc-CFLAR-1:2	XLOC_001808	linc-CASP10-2	CFLAR	"hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-25.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10chr2:202022869-202037411"	NA	inner
CUST_48818_PI429285431	3.2478583	P	3.081824	A	1.12197015499581	0	lncRNA	52655-1_{1..2105}	hg19_lincRNAsTranscripts_TCONS_l2_00014344 range=chr2:242912427-242914753 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014344 range=chr2:242912427-242914753 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	242912427	242914531	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34710_PI429285431	3.2942815	P	2.9192574	A	1.29686121833836	0	lncRNA	36158-3_{6001..6272}	n341617|AL833303|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4088|NULL|-1.0298700|-0.3703548	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341617|AL833303|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4088|NULL|-1.0298700|-0.3703548	chr8	135810262	135810533	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7337_PI429285431	9.448142	P	9.517357	P	0.953156488990745	0	lncRNA	8827-1_{1..308}	"transcript_id ""ENST00000470786.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000470786.2"" | genecode_v17"	chr20	 37501413	 37501720	+	ENSG00000240474.2	ENST00000470786.2	RN7SL116P	RN7SL116P-201	PPP1R16B	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70chr20:37491413-37511720"	NA	inner
CUST_27548_PI429285431	1.9120004	A	2.3487542	A	0.738795098512829	0	lncRNA	29123-1_{1..881}	n324734|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319014|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319014|-1.1150300|-0.3311378	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324734|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319014|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319014|-1.1150300|-0.3311378	chr22	 18721807	 18722687	+	NA	NA	NA	NA	LOC642643	NA	chr22:18711807-18735074	inter
CUST_46271_PI429285431	0.9285965	A	0.9247961	A	1.00263770919468	0	lncRNA	50510-1_{1..1173}	"gi|300244521|ref|NR_034002.1| Homo sapiens MCF2L antisense RNA 1 (MCF2L-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300244521|ref|NR_034002.1| Homo sapiens MCF2L antisense RNA 1 (MCF2L-AS1), non-coding RNA"	Chr13	113621798	113622970	-	100289410	NR_034002.1	NA	NA	NA	NA	NA	inter
CUST_19922_PI429285431	7.133025	P	6.35228	P	1.7180178190582	0	lncRNA	21577-1_{1..512}	lnc-DLX2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DLX2-3:1	chr2	173330552	173331063	-	lnc-DLX2-3	lnc-DLX2-3:1	ENSG00000232788.1	AC078883.3	ITGA6	NA	chr2:173320552-173340750	inner
CUST_51613_PI429285431	1.7759675	A	2.2470028	A	0.721446690788342	0	lncRNA	55179-1_{1..739}	hg19_lincRNAsTranscripts_TCONS_l2_00011219 range=chr17:38873515-38876159 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011219 range=chr17:38873515-38876159 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 38873515	 38874253	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47183_PI429285431	2.6051953	A	3.1329608	A	0.693628219824616	0	lncRNA	51260-1_{1..496}	"gi|377652335|ref|NR_046365.1| Homo sapiens family with sequence similarity 90, member A27, pseudogene (FAM90A27P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|377652335|ref|NR_046365.1| Homo sapiens family with sequence similarity 90, member A27, pseudogene (FAM90A27P), non-coding RNA"	Chr19	 53785543	 53786038	+	646508	NR_046365.1	NA	NA	NA	NA	NA	inter
CUST_39775_PI429285431	0.91812116	A	0.99223536	M	0.949925186283183	0	lncRNA	40691-1_{1..3000}	n405979|NR_003262|lncRNA|Homosapiens||RefGeneNoncode|NR_003262||4.3604700|-0.2174983	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n405979|NR_003262|lncRNA|Homosapiens||RefGeneNoncode|NR_003262||4.3604700|-0.2174983	chr7	 76099336	 76102335	-	NA	NA	NA	NA	DTX2	"hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.61;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80chr7:76090972-76114317"	NA	inter
CUST_3337_PI429285431	0.9820908	A	1.0447232	A	0.957515402905158	0	lncRNA	3316-1_{1..3000}	"transcript_id ""ENST00000518973.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000518973.1"" | genecode_v17"	chr8	138821687	138824686	-	ENSG00000253288.1	ENST00000518973.1	RP11-238K6.1	RP11-238K6.1-001	NA	NA	NA	inter
CUST_44431_PI429285431	2.7456384	A	2.861539	A	0.922806070721903	0	lncRNA	49043-1_{1..1147}	"gi|397139075|ref|XR_109838.2| PREDICTED: Homo sapiens SMARCA5 antisense RNA 1 (SMARCA5-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139075|ref|XR_109838.2| PREDICTED: Homo sapiens SMARCA5 antisense RNA 1 (SMARCA5-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_109838.2	NA	NA	NA	"hg19_refFlat_SMARCA5:range=chr4:144435078-1444743375'pad=0,hg19_refFlat_SMARCA5:range=chr4:144435078-1444743375'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.50"	NA	Unknown
CUST_5948_PI429285431	2.5646954	A	3.8445299	P	0.4118427508187	0	lncRNA	5877-1_{1..620}	"transcript_id ""ENST00000591334.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591334.1"" | genecode_v17"	chr17	 67590128	 67590747	+	ENSG00000227517.2	ENST00000591334.1	AC003051.1	AC003051.1-003	NA	NA	NA	inter
CUST_10299_PI429285431	1.1337758	A	0.9511979	A	1.13491000451967	0	lncRNA	11826-1_{1..628}	lnc-SFMBT2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SFMBT2-2:1	chr10	  6977075	  6977702	-	lnc-SFMBT2-2	lnc-SFMBT2-2:1	XLOC_008721	linc-PRKCQ-1	NA	NA	NA	inter
CUST_44540_PI429285431	7.0499067	P	5.8941345	P	2.22803546945086	0	lncRNA	49131-1_{1..3000}	"gi|402478650|ref|NR_073106.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402478650|ref|NR_073106.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 5, non-coding RNA"	Chr5	 52285156	 52288155	+	3673	NR_073106.1	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.21;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80"	NA	inter
CUST_35791_PI429285431	1.7039862	A	1.4065635	A	1.22894700095486	0	lncRNA	37202-1_{1..491}	n344472|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_20|NULL|-1.2633000|-0.2869892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344472|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_20|NULL|-1.2633000|-0.2869892	chr17	 45127768	 45128258	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24650_PI429285431	4.016271	P	4.6270943	P	0.65482290875542	0	lncRNA	26199-1_{1..1284}	lnc-MRGPRF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-MRGPRF-1:1	chr11	 68768233	 68769516	-	lnc-MRGPRF-1	lnc-MRGPRF-1:1	ENSG00000261625.1	RP11-554A11.4	MRGPRF	NA	chr11:68771862-68779516	inter
CUST_31478_PI429285431	2.6862605	A	2.8157527	A	0.914153157363564	0	lncRNA	33244-1_{1..293}	n337957|U84508|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|342|NULL|-0.9649570|-0.0757570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337957|U84508|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|342|NULL|-0.9649570|-0.0757570	chr22	 19973143	 19973435	-	NA	NA	NA	NA	ARVCF	NA	chr22:19963143-19983425	inner
CUST_11269_PI429285431	0.959077	A	1.2215633	A	0.83364999182611	0	lncRNA	12830-1_{1..578}	lnc-IPCEF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IPCEF1-1:1	chr6	154682739	154683316	-	lnc-IPCEF1-1	lnc-IPCEF1-1:1	XLOC_005885	linc-IPCEF1	IPCEF1	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90chr6:154672739-154677900"	NA	inter
CUST_22663_PI429285431	6.4606314	P	6.9405546	P	0.717015792398056	0	lncRNA	24247-1_{1..470}	lnc-SMNDC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMNDC1-1:1	chr10	111968330	111968799	-	lnc-SMNDC1-1	lnc-SMNDC1-1:1	ENSG00000228417.1	RP11-549L6.3	MXI1	"hg19_refFlat_MXI1:range=chr10:111967567-1120447455'pad=0,hg19_refFlat_MXI1:range=chr10:111967567-1120447455'pad=0 3'pad=0 strand=+ repeatMasking=none,-114.10chr10:111967363-111978349"	NA	inner
CUST_45886_PI429285431	0.92971486	A	1.2661196	A	0.792012585066879	0	lncRNA	50206-4_{9001..12000}	"gi|403048747|ref|NR_073142.1| Homo sapiens progesterone receptor (PGR), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|403048747|ref|NR_073142.1| Homo sapiens progesterone receptor (PGR), transcript variant 5, non-coding RNA"	Chr11	100909355	100912354	-	5241	NR_073142.2	NA	NA	NA	NA	NA	inter
CUST_34663_PI429285431	0.9157739	A	1.0433404	A	0.915374177803224	0	lncRNA	36115-1_{1..468}	n341565|AF088009|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4036|NULL|-1.2578100|-0.4272226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341565|AF088009|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4036|NULL|-1.2578100|-0.4272226	chr8	 98253541	 98254008	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19248_PI429285431	14.378407	P	13.7290745	P	1.56844234766169	0	lncRNA	20917-1_{1..661}	lnc-NME4-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NME4-1:5	chr16	   436663	   437323	+	lnc-NME4-1	lnc-NME4-1:5	ENSG00000236829.4	Z97634.5	TMEM8A	"hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80chr16:426663-431950"	NA	inter
CUST_29544_PI429285431	10.0264845	P	9.987067	P	1.02769880102507	0	lncRNA	31303-1_{1..291}	n333022|AF161338|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072068|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072068|0.2837100|-0.2127045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333022|AF161338|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072068|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072068|0.2837100|-0.2127045	chr16	  2807491	  2807781	+	NA	NA	NA	NA	SRRM2	NA	chr16:2802330-2818509	inner
LNCA_21_P0008795	0.9504796	A	1.1096084	A	0.895565712781986	0	lncRNA	BC043294	NA	BC043294	NA	Hs.560324	XLOC_011600	NA	NA	THC2611750	NA	"BROAD Institute lincRNA (XLOC_011600), lincRNA [TCONS_00023821]"	chr15:98097671-98097612	hs|15q26.2	Agilent_HUMAN_G3V2	BC043294	BC043294	chr15	 98097612	 98097671	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002853	6.7038684	P	6.680298	P	1.01647194724211	0	lncRNA	ENST00000469806	NA	NA	NA	NA	XLOC_003134	NA	ENST00000469806	THC2690000	NA	"BROAD Institute lincRNA (XLOC_003134), lincRNA [TCONS_00005776]"	chr3:55369552-55369493	hs|3p14.3	Agilent_HUMAN_G3V2	ENST00000469806	ENST00000469806	chr3	 55369493	 55369552	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13623_PI429285431	2.8809426	A	3.1164227	P	0.849402288040349	0	lncRNA	15263-1_{1..205}	lnc-RNF224-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF224-1:1	chr9	140119382	140119586	+	lnc-RNF224-1	lnc-RNF224-1:1	XLOC_007620	linc-C9orf169	C9orf169	"hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50chr9:140119644-140120763"	NA	inter
CUST_1658_PI429285431	4.984326	P	4.788359	P	1.14549169586689	0	lncRNA	1643-1_{1..1090}	"transcript_id ""ENST00000600197.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600197.1"" | genecode_v17"	chr3	195435025	195436114	+	ENSG00000242086.3	ENST00000600197.1	AC069513.3	AC069513.3-027	MUC20	NA	chr3:195447753-195464540	inner
CUST_23003_PI429285431	0.9210254	A	0.91261363	A	1.00584762566026	0	lncRNA	24577-1_{1..572}	lnc-RARS-4:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-RARS-4:10	chr5	168464686	168465257	+	lnc-RARS-4	lnc-RARS-4:10	ENSG00000248222.1	CTB-174D11.1	SLIT3	NA	chr5:168454686-168475003	inner
CUST_40653_PI429285431	4.5037565	P	4.636684	P	0.911978994204212	0	lncRNA	41392-1_{1..747}	n410198|NR_037142|lncRNA|Homosapiens||RefGeneNoncode|NR_037142||3.2916100|-0.1422230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410198|NR_037142|lncRNA|Homosapiens||RefGeneNoncode|NR_037142||3.2916100|-0.1422230	chr20	  1754010	  1754756	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49623_PI429285431	1.5830894	A	2.5493214	A	0.511841134348298	0	lncRNA	53408-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00025640 range=chr7:6677494-6697399 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025640 range=chr7:6677494-6697399 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  6680494	  6683493	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
LNCA_21_P0006826	0.9871343	A	1.3959495	A	0.753241712579443	0	lncRNA	TCONS_00018107	NA	NA	NA	NA	XLOC_008370	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008370), lincRNA [TCONS_00018107]"	chr10:6657748-6657807	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018107	TCONS_00018107	chr10	  6657748	  6657807	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4827_PI429285431	5.5009637	P	5.6781993	P	0.884395996829058	0	lncRNA	4770-1_{1..562}	"transcript_id ""ENST00000456100.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456100.1"" | genecode_v17"	chr14	 53684430	 53684991	+	ENSG00000237356.1	ENST00000456100.1	AL163953.3	AL163953.3-001	NA	NA	NA	inter
CUST_45498_PI429285431	8.477874	P	8.0057745	P	1.3871266333825	0	lncRNA	49910-1_{1..2585}	"gi|217416383|ref|NR_024581.1| Homo sapiens ankyrin repeat and SOCS box containing 13 (ASB13), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|217416383|ref|NR_024581.1| Homo sapiens ankyrin repeat and SOCS box containing 13 (ASB13), transcript variant 2, non-coding RNA"	Chr10	  5680820	  5683404	-	79754	NR_024581.1	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-62.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10"	NA	inter
CUST_23725_PI429285431	1.7133588	A	1.4522028	A	1.19843860265022	0	lncRNA	25289-1_{1..846}	lnc-LRRC57-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC57-1:1	chr15	 42824528	 42825373	-	lnc-LRRC57-1	lnc-LRRC57-1:1	ENSG00000261684.1	RP11-265N6.1	SNAP23	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.82;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-22.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40chr15:42814528-42825259"	NA	inner
CUST_20569_PI429285431	0.92826706	A	2.3828282	A	0.364866059455105	0	lncRNA	22210-1_{1..444}	lnc-POTEI-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POTEI-1:1	chr2	131284178	131284621	-	lnc-POTEI-1	lnc-POTEI-1:1	ENSG00000225819.1	AC013269.3	CFC1B	NA	chr2:131278667-131285565	inner
CUST_21975_PI429285431	1.2394018	A	1.0746918	A	1.12094073207725	0	lncRNA	23583-1_{1..467}	lnc-C14orf28-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C14orf28-1:3	chr14	 45007477	 45007943	+	lnc-C14orf28-1	lnc-C14orf28-1:3	ENSG00000258747.1	RP11-163M18.1	NA	NA	NA	inter
CUST_28112_PI429285431	3.0990367	P	3.5785713	P	0.717208951630036	0	lncRNA	29734-1_{1..488}	n325384|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323950|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323950|-1.0328000|-0.3617289	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325384|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323950|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323950|-1.0328000|-0.3617289	chr2	 21297551	 21298038	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7515_PI429285431	1.1549667	A	1.731993	A	0.670344075459896	0	lncRNA	9155-1_{1..973}	lnc-METTL15-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-METTL15-4:1	chr11	 27697124	 27698096	+	lnc-METTL15-4	lnc-METTL15-4:1	ENSG00000245573	AC104563.1	BDNF	"hg19_refFlat_BDNF:range=chr11:27679368-276801115'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-276801115'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BDNF:range=chr11:27679368-276958315'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-276958315'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BDNF:range=chr11:27679368-277225835'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277225835'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BDNF:range=chr11:27679368-277209525'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277209525'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BDNF:range=chr11:27679368-277429615'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277429615'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00chr11:27687124-27707525"	NA	inter
CUST_49834_PI429285431	0.9280462	A	0.9705701	A	0.970954839159956	0	lncRNA	53592-1_{1..1524}	hg19_lincRNAsTranscripts_TCONS_l2_00025979 range=chr7:65235901-65267658 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025979 range=chr7:65235901-65267658 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 65235901	 65237424	+	NA	NA	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.06;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
CUST_34916_PI429285431	4.1131525	P	5.270834	P	0.448232293930302	0	lncRNA	36338-1_{1..659}	n341834|AF087987|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4313|NULL|-1.2426100|-0.3587147	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341834|AF087987|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4313|NULL|-1.2426100|-0.3587147	chr6	 37618993	 37619651	-	NA	NA	NA	NA	MDGA1	NA	chr6:37608993-37629648	inner
CUST_795_PI429285431	3.3424373	P	2.7762878	A	1.48056671452223	0	lncRNA	788-1_{1..1437}	"transcript_id ""ENST00000565841.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565841.1"" | genecode_v17"	chr2	 20877569	 20879005	+	ENSG00000260396.1	ENST00000565841.1	AC012065.7	AC012065.7-001	C2orf43	NA	chr2:20884818-20889005	inter
CUST_42804_PI429285431	2.2026765	A	3.2975025	A	0.468192587900946	0	lncRNA	45801-1_{1..96}	ENST00000459538 ncrna:snoRNA chromosome:GRCh37:22:29729152:29729247:-1 gene:ENSG00000239127 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459538 ncrna:snoRNA chromosome:GRCh37:22:29729152:29729247:-1 gene:ENSG00000239127 gene_biotype:snoRNA transcript_biotype:snoRNA	chr22	 29729152	 29729247	-	ENSG00000239127	ENST00000459538	NA	NA	AP1B1	NA	chr22:29723669-29739247	inner
CUST_29639_PI429285431	2.524398	A	3.3029513	P	0.582951069593092	0	lncRNA	31400-1_{1..321}	n333215|AF469204|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000080392|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000080392|-0.8740670|-0.0944357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333215|AF469204|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000080392|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000080392|-0.8740670|-0.0944357	chr14	102021886	102022206	+	NA	NA	NA	NA	DIO3	NA	chr14:102027688-102029789	inter
CUST_13631_PI429285431	0.9586531	A	0.91668606	A	1.02951656269499	0	lncRNA	15270-1_{1..363}	lnc-ACBD6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACBD6-3:1	chr1	180123543	180123905	-	lnc-ACBD6-3	lnc-ACBD6-3:1	XLOC_001110	linc-TOR1AIP2-3	QSOX1	NA	chr1:180123968-180133589	inter
CUST_19239_PI429285431	8.444504	P	10.233473	M	0.289378772225208	0	lncRNA	20908-1_{1..447}	lnc-C5orf51-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C5orf51-1:1	chr5	 41870868	 41871314	+	lnc-C5orf51-1	lnc-C5orf51-1:1	ENSG00000248668.1	OXCT1-AS1	OXCT1	"hg19_refFlat_OXCT1:range=chr5:41731831-418704605'pad=0,hg19_refFlat_OXCT1:range=chr5:41731831-418704605'pad=0 3'pad=0 strand=- repeatMasking=none,-100.90chr5:41860868-41870791"	NA	inter
CUST_111_PI429201921	4.6354074	P	5.272645	P	0.642942845600116	0	lncRNA	111-1_{1..3000}	TC21000570.hg.1	TCONS_l2_00016966-XLOC_l2_008976 // Broad TUCP // linc-POTED-3 chr21:+:14721584-14724906 // chr21 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr21:+:14721584-14724906	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00016966-XLOC_l2_008976	linc-POTED-3	chr21	 14721584	 14724906	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49782_PI429285431	5.534864	P	5.86083	P	0.797764040495938	0	lncRNA	53541-2_{3001..3742}	hg19_lincRNAsTranscripts_TCONS_l2_00026596 range=chr7:57283852-57290593 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026596 range=chr7:57283852-57290593 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 57286852	 57287593	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40986_PI429285431	3.870148	P	3.758206	P	1.08068195501031	0	lncRNA	41654-2_{3001..4015}	n411120|NR_038944|lncRNA|Homosapiens||RefGeneNoncode|NR_038944||5.8082700|-0.1295414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n411120|NR_038944|lncRNA|Homosapiens||RefGeneNoncode|NR_038944||5.8082700|-0.1295414	chr22	 49265581	 49266595	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8631_PI429285431	0.91623646	A	0.90577006	A	1.00728113514406	0	lncRNA	10183-1_{1..1866}	lnc-HMGB2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HMGB2-3:2	chr4	174090015	174091880	-	lnc-HMGB2-3	lnc-HMGB2-3:2	ENSG00000245213	RP11-10K16.1	GALNT7	"hg19_refFlat_GALNT7:range=chr4:174089987-1742428685'pad=0,hg19_refFlat_GALNT7:range=chr4:174089987-1742428685'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.80chr4:174089904-174100306"	NA	inner
CUST_34816_PI429285431	0.9126918	A	1.274266	A	0.778314856117044	0	lncRNA	36249-1_{1..3000}	n341724|AK096349|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4197|NULL|1.0700200|-0.2927521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341724|AK096349|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4197|NULL|1.0700200|-0.2927521	chr9	 96300702	 96303701	+	NA	NA	NA	NA	FAM120A	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr9:96290702-96315039"	NA	inner
CUST_50671_PI429285431	1.3430892	A	1.0546627	A	1.22130751111442	0	lncRNA	54345-2_{3001..5591}	hg19_lincRNAsTranscripts_TCONS_l2_00003012 range=chr10:43979980-44021239 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003012 range=chr10:43979980-44021239 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 43982980	 43985570	+	NA	NA	NA	NA	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50"	NA	inter
CUST_51524_PI429285431	2.1619449	A	1.9072021	A	1.19312301713536	0	lncRNA	55097-1_{1..838}	hg19_lincRNAsTranscripts_TCONS_l2_00010693 range=chr17:29350124-29360364 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010693 range=chr17:29350124-29360364 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 29350124	 29350961	+	NA	NA	NA	NA	LOC646021	NA	chr17:29340124-29359716	inter
CUST_36942_PI429285431	0.92195666	A	1.4332339	A	0.701601024711187	0	lncRNA	38097-1_{1..1183}	n345413|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_962|NULL|-1.3502100|-0.2856330	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345413|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_962|NULL|-1.3502100|-0.2856330	chr22	 36474561	 36475743	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008868	0.9686214	A	0.919161	A	1.03487778416163	0	lncRNA	TCONS_00024213	NA	NA	NA	NA	XLOC_011603	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011603), lincRNA [TCONS_00024213]"	chr15:98539374-98539315	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_00024213	TCONS_00024213	chr15	 98539315	 98539374	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1197_PI429285431	1.6181477	A	1.4578161	A	1.11754397336044	0	lncRNA	1188-1_{1..1028}	"transcript_id ""ENST00000418387.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418387.1"" | genecode_v17"	chr2	195868435	195869462	-	ENSG00000235056.1	ENST00000418387.1	AC010983.1	AC010983.1-001	NA	NA	NA	inter
CUST_16899_PI429285431	2.022732	A	2.043288	A	0.985852693667533	0	lncRNA	18608-1_{1..568}	lnc-SIK1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIK1-4:3	chr21	 44899055	 44899622	-	lnc-SIK1-4	lnc-SIK1-4:3	XLOC_014105	linc-SIK1-2	NA	NA	NA	inter
LNCA_21_P0013612	0.9558282	A	0.9170698	A	1.02722940066124	0	lncRNA	ENST00000416242	NA	NA	NA	NA	XLOC_l2_015090	NA	ENST00000416242	NA	NA	"BROAD Institute lincRNA (XLOC_001631), lincRNA [TCONS_00004874]"	chr9:113025-112966	hs|9p24.3	Agilent_HUMAN_G3V2	ENST00000416242	ENST00000416242	chr9	   112966	   113025	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25348_PI429285431	1.5471315	A	0.91609657	A	1.54867555121354	0	lncRNA	26879-1_{1..577}	lnc-PPP1R1A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP1R1A-2:1	chr12	 54937771	 54938347	-	lnc-PPP1R1A-2	lnc-PPP1R1A-2:1	ENSG00000257824.1	RP11-1049A21.2	NCKAP1L	NA	chr12:54927771-54936899	inter
CUST_2863_PI429285431	4.5681205	P	4.0751977	P	1.40729306770418	0	lncRNA	2844-2_{3001..5249}	"transcript_id ""ENST00000449307.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449307.2"" | genecode_v17"	chr7	 65995918	 65998166	-	ENSG00000229180.3	ENST00000449307.2	GS1-124K5.11	GS1-124K5.11-001	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.01;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80"	NA	inter
CUST_7137_PI429285431	3.3300872	P	3.996603	P	0.630026405130921	0	lncRNA	7073-1_{1..221}	"transcript_id ""ENST00000438677.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000438677.1"" | genecode_v17"	chrY	  8551411	  8551631	-	ENSG00000233699.1	ENST00000438677.1	TTTY18	TTTY18-001	NA	NA	NA	inter
CUST_12208_PI429285431	1.6612227	A	2.197922	A	0.689346241509293	0	lncRNA	13810-1_{1..445}	lnc-MED13L-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MED13L-3:1	chr12	116201307	116201751	-	lnc-MED13L-3	lnc-MED13L-3:1	XLOC_010209	linc-TBX3-4	NA	NA	NA	inter
CUST_10771_PI429285431	1.8613088	A	1.8643624	A	0.997885644175466	0	lncRNA	12307-1_{1..907}	lnc-C10orf120-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf120-2:1	chr10	124103632	124104538	-	lnc-C10orf120-2	lnc-C10orf120-2:1	XLOC_008974	linc-NSMCE4A-2	BTBD16	NA	chr10:124093632-124097676	inter
CUST_45771_PI429285431	1.7824124	A	0.9354197	A	1.79874752265603	0	lncRNA	50116-1_{1..655}	"gi|219803829|ref|NR_026576.1| Homo sapiens serum amyloid A3 pseudogene (SAA3P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|219803829|ref|NR_026576.1| Homo sapiens serum amyloid A3 pseudogene (SAA3P), non-coding RNA"	NA	NA	NA	NA	NA	NR_026576.1	NA	NA	NA	NA	NA	Unknown
CUST_13338_PI429285431	0.91193163	A	0.9001331	A	1.0082116499573	0	lncRNA	14975-1_{1..456}	lnc-HS1BP3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HS1BP3-1:2	chr2	 20739630	 20740085	-	lnc-HS1BP3-1	lnc-HS1BP3-1:2	XLOC_002010	linc-PUM2-2	HS1BP3	NA	chr2:20729630-20749898	inter
CUST_43417_PI429285431	4.6397524	P	4.638191	P	1.00108286588408	0	lncRNA	48229-1_{1..1917}	"gi|323462195|ref|NR_037869.1| Homo sapiens uncharacterized LOC653160 (LOC653160), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|323462195|ref|NR_037869.1| Homo sapiens uncharacterized LOC653160 (LOC653160), non-coding RNA"	Chr1	 35441300	 35443216	-	653160	NR_037869.1	NA	NA	NA	NA	NA	inter
CUST_30881_PI429285431	0.9196467	A	0.92731327	A	0.994700033266452	0	lncRNA	32669-1_{1..215}	n336889|AY827491|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332395|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332395|0.3495430|-0.2118223	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336889|AY827491|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332395|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332395|0.3495430|-0.2118223	chr1	152086425	152086639	-	NA	NA	NA	NA	RPTN	NA	chr1:152095636-152097920	inner
CUST_7229_PI429285431	0.90991133	A	0.9002845	A	1.00669512287144	0	lncRNA	7766-1_{1..375}	"transcript_id ""ENST00000410583.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410583.1"" | genecode_v17"	chr6	 22085773	 22086147	+	ENSG00000222515.1	ENST00000410583.1	RN7SKP240	RN7SKP240-201	NA	NA	NA	inter
LNCA_21_P0002105	4.9871736	P	4.797469	P	1.14053016193289	0	lncRNA	ENST00000419784	NA	NA	NA	NA	XLOC_002326	NA	ENST00000419784	THC2665950	NA	"BROAD Institute lincRNA (XLOC_002326), lincRNA [TCONS_00003406]"	chr2:132741822-132741763	hs|2q21.2	Agilent_HUMAN_G3V2	ENST00000419784	ENST00000419784	chr2	132741763	132741822	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34348_PI429285431	0.9013153	A	0.89487064	A	1.00447709026393	0	lncRNA	35839-1_{1..3000}	n341218|BC042044|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3686|NULL|-1.0570800|-0.3648415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341218|BC042044|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3686|NULL|-1.0570800|-0.3648415	chr7	 28777527	 28780526	-	NA	NA	NA	NA	CREB5	NA	chr7:28767527-28865511	inner
CUST_49998_PI429285431	0.9552034	A	0.90785736	A	1.03336221676114	0	lncRNA	53735-1_{1..448}	hg19_lincRNAsTranscripts_TCONS_l2_00027546 range=chr8:833265-982894 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027546 range=chr8:833265-982894 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	   833265	   833712	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38843_PI429285431	0.92327476	A	1.2012626	A	0.824740500046062	0	lncRNA	39834-1_{1..1418}	n384660|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jxn.3||-1.1741500|-0.4445719	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384660|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jxn.3||-1.1741500|-0.4445719	chr5	 68956449	 68957866	-	NA	NA	NA	NA	LOC100652852	NA	chr5:68949135-68950156	inter
CUST_25628_PI429285431	1.2234207	A	1.8645828	A	0.641196253062469	0	lncRNA	27158-1_{1..1047}	lnc-DPP4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DPP4-2:1	chr2	162111096	162112142	-	lnc-DPP4-2	lnc-DPP4-2:1	ENSG00000235724.1	AC009299.2	NA	NA	NA	inter
CUST_4177_PI429285431	1.0404216	A	0.9403567	A	1.07182167762009	0	lncRNA	4135-1_{1..460}	"transcript_id ""ENST00000539105.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539105.1"" | genecode_v17"	chr12	 17742191	 17742650	+	ENSG00000256389.1	ENST00000539105.1	RP11-606D9.1	RP11-606D9.1-001	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-17.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-16.70"	NA	inter
CUST_46104_PI429285431	0.9105411	A	0.9778491	A	0.954417234490629	0	lncRNA	50367-1_{1..2448}	"gi|394025731|ref|NR_072995.1| Homo sapiens GLI pathogenesis-related 1 like 2 (GLIPR1L2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|394025731|ref|NR_072995.1| Homo sapiens GLI pathogenesis-related 1 like 2 (GLIPR1L2), transcript variant 3, non-coding RNA"	Chr12	 75784850	 75787297	+	144321	NR_072995.1	NA	NA	NA	NA	NA	inter
CUST_44439_PI429285431	3.6499078	P	3.6525328	P	0.998182142958309	0	lncRNA	49050-1_{1..3000}	"gi|306774096|ref|NR_036614.1| Homo sapiens doublecortin-like kinase 2 (DCLK2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|306774096|ref|NR_036614.1| Homo sapiens doublecortin-like kinase 2 (DCLK2), transcript variant 3, non-coding RNA"	Chr4	150999426	151002425	+	166614	NR_036614.1	NA	NA	NA	NA	NA	inter
CUST_307_PI429285431	3.153073	A	3.1140397	A	1.02742515392834	0	lncRNA	299-2_{3001..3181}	"transcript_id ""ENST00000461990.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000461990.1"" | genecode_v17"	chr1	 87598553	 87598733	+	ENSG00000267272.1	ENST00000461990.1	RP5-1052I5.1	RP5-1052I5.1-002	NA	NA	NA	inter
CUST_45349_PI429285431	0.9179522	A	0.9175379	A	1.00028721211441	0	lncRNA	49786-1_{1..999}	"gi|226423899|ref|NR_027472.1| Homo sapiens general transcription factor II, i pseudogene (LOC642929), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|226423899|ref|NR_027472.1| Homo sapiens general transcription factor II, i pseudogene (LOC642929), non-coding RNA"	Chr9	 43140537	 43141535	-	642929	NR_027472.1	NA	NA	NA	NA	NA	inter
CUST_18006_PI429285431	2.1423671	A	2.375604	A	0.8507240235651	0	lncRNA	19739-1_{1..1316}	lnc-IGFL1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGFL1-1:2	chr19	 46715373	 46716688	+	lnc-IGFL1-1	lnc-IGFL1-1:2	XLOC_013100	linc-IGFL1-1	IGFL1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr19:46722592-46725832"	NA	inter
CUST_30284_PI429285431	4.2253265	P	3.6959136	P	1.44334171283251	0	lncRNA	32060-1_{1..227}	n335180|AY429525|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254613|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254613|0.7748980|-0.1831099	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335180|AY429525|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254613|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254613|0.7748980|-0.1831099	chr2	202122842	202123068	+	NA	NA	NA	NA	CASP8	NA	chr2:202112842-202147448	inner
CUST_40901_PI429285431	0.92066586	A	1.0641191	A	0.905349511896338	0	lncRNA	41587-1_{1..1673}	n410737|NR_038190_2|lncRNA|Homosapiens||RefGeneNoncode|NR_038190_2||-1.0440200|-0.2545119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410737|NR_038190_2|lncRNA|Homosapiens||RefGeneNoncode|NR_038190_2||-1.0440200|-0.2545119	chr6	  3409764	  3411436	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3399764-3423119	inner
CUST_2757_PI429285431	1.526179	A	2.237651	A	0.610696719270825	0	lncRNA	2740-1_{1..540}	"transcript_id ""ENST00000428901.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428901.1"" | genecode_v17"	chr7	  6121302	  6121841	+	ENSG00000231704.1	ENST00000428901.1	AC004895.4	AC004895.4-003	NA	NA	NA	inter
CUST_11748_PI429285431	1.4031448	A	2.2368433	A	0.56108898656412	0	lncRNA	13328-1_{1..905}	lnc-HFM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HFM1-1:1	chr1	 91964072	 91964976	-	lnc-HFM1-1	lnc-HFM1-1:1	XLOC_000916	linc-HFM1-1	CDC7	NA	chr1:91966404-91974760	inter
CUST_51186_PI429285431	0.8989309	A	0.89635164	A	1.00178940587631	0	lncRNA	54806-1_{1..613}	hg19_lincRNAsTranscripts_TCONS_l2_00007927 range=chr14:103605385-103606409 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007927 range=chr14:103605385-103606409 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	103605385	103605997	+	NA	NA	NA	NA	TNFAIP2	NA	chr14:103595385-103603776	inter
CUST_34076_PI429285431	3.0565908	A	3.128402	P	0.951442779874377	0	lncRNA	35605-1_{1..975}	n340900|BC029571|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3365|NULL|1.4520000|-0.1677468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340900|BC029571|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3365|NULL|1.4520000|-0.1677468	chr6	 27356045	 27357019	-	NA	NA	NA	NA	ZNF391	NA	chr6:27356524-27367004	inner
CUST_9323_PI429285431	1.9899116	A	2.281764	A	0.81685255781455	0	lncRNA	10831-1_{1..615}	lnc-CITED2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CITED2-3:1	chr6	140312130	140312744	-	lnc-CITED2-3	lnc-CITED2-3:1	XLOC_005858	linc-CITED2-4	NA	NA	NA	inter
CUST_16139_PI429285431	1.8846678	A	3.1736283	A	0.409245795511	0	lncRNA	17845-1_{1..610}	lnc-C14orf166B-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf166B-3:3	chr14	 77431958	 77432567	+	lnc-C14orf166B-3	lnc-C14orf166B-3:3	XLOC_010881	linc-KIAA1737-2	NA	NA	NA	inter
CUST_43090_PI429285431	0.95714587	A	1.0766068	A	0.920531547449373	0	lncRNA	47355-1_{1..230}	ENST00000410569 ncrna:snRNA chromosome:GRCh37:8:129022628:129022857:-1 gene:ENSG00000222501 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410569 ncrna:snRNA chromosome:GRCh37:8:129022628:129022857:-1 gene:ENSG00000222501 gene_biotype:snRNA transcript_biotype:snRNA	chr8	129022628	129022857	-	ENSG00000222501	ENST00000410569	NA	NA	NA	NA	NA	inter
CUST_40218_PI429285431	0.9133345	A	0.9158663	A	0.998246628922494	0	lncRNA	41042-2_{3001..3824}	n408048|NR_027840|lncRNA|Homosapiens||RefGeneNoncode|NR_027840||3.4524300|-0.3558625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408048|NR_027840|lncRNA|Homosapiens||RefGeneNoncode|NR_027840||3.4524300|-0.3558625	chr3	197480260	197481083	+	NA	NA	NA	NA	LRCH3	NA	chr3:197518145-197521317	inter
LNCA_21_P0001094	2.8998966	A	3.5215924	P	0.649906553069541	0	lncRNA	ENST00000425194	NA	NA	NA	NA	XLOC_000684	NA	ENST00000425194	THC2677242	NA	"BROAD Institute lincRNA (XLOC_000684), lincRNA [TCONS_00002282]"	chr1:4008275-4008216	hs|1p36.32	Agilent_HUMAN_G3V2	ENST00000425194	ENST00000425194	chr1	  4008216	  4008275	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3574_PI429285431	3.5548437	P	3.5552077	P	0.999747726252651	0	lncRNA	3544-1_{1..632}	"transcript_id ""ENST00000583117.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583117.1"" | genecode_v17"	chr10	  1205744	  1206375	+	ENSG00000229205.2	ENST00000583117.1	LINC00200	LINC00200-002	NA	NA	NA	inter
CUST_3594_PI429285431	1.5830541	A	0.9136151	A	1.59045439020327	0	lncRNA	3564-1_{1..591}	"transcript_id ""ENST00000432452.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432452.2"" | genecode_v17"	chr10	  3976711	  3977301	+	ENSG00000226005.3	ENST00000432452.2	RP11-464C19.3	RP11-464C19.3-001	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.01;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80"	NA	inter
CUST_23792_PI429285431	0.91015995	A	1.4222302	A	0.701215479791195	0	lncRNA	25357-1_{1..839}	lnc-DHRS7B-5:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHRS7B-5:17	chr17	 20901139	 20901977	+	lnc-DHRS7B-5	lnc-DHRS7B-5:17	ENSG00000233098.3	RP11-344E13.3	USP22	NA	chr17:20902906-20911341	inter
CUST_24717_PI429285431	5.2692785	P	5.499279	P	0.852634596267273	0	lncRNA	26263-1_{1..523}	lnc-PRB1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PRB1-1:4	chr12	 11639498	 11640020	-	lnc-PRB1-1	lnc-PRB1-1:4	ENSG00000255790.1	RP11-711K1.7	NA	NA	NA	inter
CUST_36414_PI429285431	0.92312425	A	1.2662982	A	0.788305120050475	0	lncRNA	37632-1_{1..2182}	n344931|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_480|NULL|-1.3136400|-0.2451072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344931|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_480|NULL|-1.3136400|-0.2451072	chr6	154718460	154720641	-	NA	NA	NA	NA	CNKSR3	NA	chr6:154726433-154735313	inter
LNCA_21_P0002729	0.9279592	A	2.1411579	A	0.431311264393819	0	lncRNA	ENST00000455626	NA	BC041892	NA	Hs.639381	XLOC_002595	NA	ENST00000455626	THC2614139	NA	"BROAD Institute lincRNA (XLOC_002595), lincRNA [TCONS_00005498]"	chr3:20392313-20392372	hs|3p24.3	Agilent_HUMAN_G3V2	ENST00000455626	ENST00000455626	chr3	 20392313	 20392372	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47955_PI429285431	4.730295	P	4.9825583	P	0.839578251184146	0	lncRNA	51846-1_{1..1595}	"gi|410172574|ref|XR_171861.1| PREDICTED: Homo sapiens uncharacterized LOC729815 (LOC729815), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172574|ref|XR_171861.1| PREDICTED: Homo sapiens uncharacterized LOC729815 (LOC729815), misc_RNA"	NA	NA	NA	NA	NA	XR_171861.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014593	0.928832	A	0.9215942	A	1.00502946618014	0	lncRNA	XR_110435	XR_110435	XR_110435	NA	Hs.568874	LOC100507596	uncharacterized LOC100507596	ENST00000454270	THC2758088	NA	"PREDICTED: Homo sapiens hypothetical LOC100507596 (LOC100507596), miscRNA [XR_110435]"	chr10:91227787-91227846	hs|10q23.31	Agilent_HUMAN_G3V2	XR_110435	XR_110435	chr10	 91227787	 91227846	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5763_PI429285431	1.6932158	A	1.2722332	A	1.33883910946263	0	lncRNA	5688-1_{1..543}	"transcript_id ""ENST00000435953.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435953.2"" | genecode_v17"	chr17	 19360393	 19360935	+	ENSG00000231477.2	ENST00000435953.2	CTB-187M2.1	CTB-187M2.1-001	NA	NA	NA	inter
CUST_45391_PI429285431	4.723881	P	4.8057885	P	0.944807616448289	0	lncRNA	49821-1_{1..388}	"gi|410170577|ref|XR_171054.1| PREDICTED: Homo sapiens uncharacterized LOC101060023 (LOC101060023), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170577|ref|XR_171054.1| PREDICTED: Homo sapiens uncharacterized LOC101060023 (LOC101060023), misc_RNA"	NA	NA	NA	NA	NA	XR_171054.1	NA	NA	NA	NA	NA	Unknown
CUST_40785_PI429285431	1.8873404	A	1.1661997	A	1.64848493189259	0	lncRNA	41498-2_{3001..3890}	n410532|NR_037687|lncRNA|Homosapiens||RefGeneNoncode|NR_037687||6.7736100|-0.2530751	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410532|NR_037687|lncRNA|Homosapiens||RefGeneNoncode|NR_037687||6.7736100|-0.2530751	chr12	 94659296	 94660185	+	NA	NA	NA	NA	CCDC41	NA	chr12:94702056-94711451	inner
CUST_45635_PI429285431	8.44815	P	8.262913	P	1.13700374018696	0	lncRNA	50017-1_{1..1712}	"gi|261598990|ref|NR_029407.1| Homo sapiens uncharacterized LOC642361 (LOC642361), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|261598990|ref|NR_029407.1| Homo sapiens uncharacterized LOC642361 (LOC642361), non-coding RNA"	Chr10	 81585658	 81587369	+	642361	NR_029407.1	NA	NA	NA	NA	NA	inter
CUST_15515_PI429285431	2.0266948	A	2.1431446	A	0.922454847055403	0	lncRNA	17202-3_{6001..9000}	lnc-NAP1L2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NAP1L2-1:4	chrX	 73067217	 73070216	-	lnc-NAP1L2-1	lnc-NAP1L2-1:4	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_26095_PI429285431	1.2332191	A	1.624844	A	0.762270579382636	0	lncRNA	27608-1_{1..401}	lnc-UCHL3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UCHL3-2:1	chr13	 75949987	 75950387	+	lnc-UCHL3-2	lnc-UCHL3-2:1	ENSG00000225203.1	TBC1D4-AS1	TBC1D4	NA	chr13:75939987-75960209	inner
CUST_15578_PI429285431	0.93905085	A	0.9931661	A	0.963184946712511	0	lncRNA	17262-1_{1..2155}	lnc-MFNG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MFNG-1:1	chr22	 37862689	 37864843	-	lnc-MFNG-1	lnc-MFNG-1:1	XLOC_014369	linc-ELFN2	MFNG	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-62.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30chr22:37865101-37872888"	NA	inter
CUST_9914_PI429285431	2.2560604	A	2.8007576	A	0.685535270938632	0	lncRNA	11438-1_{1..428}	lnc-RBMX-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RBMX-2:1	chrX	135992435	135992862	-	lnc-RBMX-2	lnc-RBMX-2:1	XLOC_008244	linc-RBMX-1	NA	NA	NA	inter
CUST_35580_PI429285431	15.045147	P	15.115211	P	0.952595738607372	0	lncRNA	36995-1_{1..245}	n342714|AF275799|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5216|NULL|-1.1985100|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342714|AF275799|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5216|NULL|-1.1985100|-1.0000000	chr5	172083325	172083569	-	NA	NA	NA	NA	NEURL1B	NA	chr5:172073325-172093570	inner
CUST_48190_PI429285431	0.979846	A	1.2069739	A	0.854333997812422	0	lncRNA	52053-1_{1..1695}	"gi|341915002|ref|XR_133567.1| PREDICTED: Homo sapiens TMLHE antisense RNA 1 (TMLHE-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|341915002|ref|XR_133567.1| PREDICTED: Homo sapiens TMLHE antisense RNA 1 (TMLHE-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_133567.1	NA	NA	NA	NA	NA	Unknown
CUST_20606_PI429285431	7.9821463	P	8.31049	P	0.796450331587586	0	lncRNA	22245-1_{1..897}	lnc-TUBA1C-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUBA1C-1:3	chr12	 49525103	 49525999	+	lnc-TUBA1C-1	lnc-TUBA1C-1:3	ENSG00000258017.1	RP11-386G11.10	TUBA1B	"hg19_refFlat_TUBA1A:range=chr12:49578793-495827625'pad=0,hg19_refFlat_TUBA1A:range=chr12:49578793-495827625'pad=0 3'pad=0 strand=- repeatMasking=none,-95.60;hg19_refFlat_TUBA4A:range=chr2:220115074-2201185805'pad=0,hg19_refFlat_TUBA4A:range=chr2:220115074-2201185805'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_TUBA1B:range=chr12:49521741-495250835'pad=0,hg19_refFlat_TUBA1B:range=chr12:49521741-495250835'pad=0 3'pad=0 strand=- repeatMasking=none,-95.60;hg19_refFlat_TUBA3E:range=chr2:130949404-1309559335'pad=0,hg19_refFlat_TUBA3E:range=chr2:130949404-1309559335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TUBA3C:range=chr13:19748003-197558875'pad=0,hg19_refFlat_TUBA3C:range=chr13:19748003-197558875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TUBA1C:range=chr12:49658965-496670105'pad=0,hg19_refFlat_TUBA1C:range=chr12:49658965-496670105'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.50;hg19_refFlat_TUBA1A:range=chr12:49578793-495805145'pad=0,hg19_refFlat_TUBA1A:range=chr12:49578793-495805145'pad=0 3'pad=0 strand=- repeatMasking=none,-95.60;hg19_refFlat_TUBA1A:range=chr12:49578793-495822025'pad=0,hg19_refFlat_TUBA1A:range=chr12:49578793-495822025'pad=0 3'pad=0 strand=- repeatMasking=none,-95.60;hg19_refFlat_TUBA3D:range=chr2:132233773-1322404215'pad=0,hg19_refFlat_TUBA3D:range=chr2:132233773-1322404215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50chr12:49521565-49525304"	NA	inner
LNCA_21_P0013427	1.6571574	A	0.95910645	A	1.62231160345379	0	lncRNA	XR_109619	XR_109619	XR_109619	NA	Hs.586309	LOC100506053	uncharacterized LOC100506053	ENST00000442649	THC2525996	NA	"PREDICTED: Homo sapiens hypothetical LOC100506053 (LOC100506053), miscRNA [XR_109619]"	chr20:46749106-46749164	hs|20q13.13	Agilent_HUMAN_G3V2	XR_109619	XR_109619	chr20	 46749106	 46749164	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15564_PI429285431	6.957299	P	6.998125	P	0.972098223354309	0	lncRNA	17249-1_{1..3000}	lnc-ARFGEF2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARFGEF2-2:4	chr20	 47104047	 47107046	+	lnc-ARFGEF2-2	lnc-ARFGEF2-2:4	XLOC_013552	linc-ARFGEF2-3	NA	NA	NA	inter
CUST_20427_PI429285431	0.9486017	A	0.9193846	A	1.02045820854516	0	lncRNA	22071-1_{1..793}	lnc-C9orf146-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C9orf146-2:2	chr9	 14357151	 14357943	+	lnc-C9orf146-2	lnc-C9orf146-2:2	ENSG00000225472.1	RP11-120J1.1	NFIB	NA	chr9:14347151-14367907	inner
CUST_3526_PI429285431	0.90832955	A	0.8893033	A	1.0132753366511	0	lncRNA	3495-1_{1..427}	"transcript_id ""ENST00000444701.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444701.1"" | genecode_v17"	chr9	118014817	118015243	-	ENSG00000234692.1	ENST00000444701.1	RP11-445L6.3	RP11-445L6.3-001	1-Dec	NA	chr9:118004817-118026530	inner
CUST_28505_PI429285431	0.92435503	A	0.9119254	A	1.00865278376859	0	lncRNA	30174-1_{1..552}	n325850|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051028|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051028|-0.8655930|-0.2287235	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325850|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051028|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051028|-0.8655930|-0.2287235	chr10	131874434	131874985	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50096_PI429285431	1.094052	A	1.1714232	A	0.947783072738976	0	lncRNA	53828-1_{1..805}	hg19_lincRNAsTranscripts_TCONS_l2_00029406 range=chr9:75487296-75504807 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029406 range=chr9:75487296-75504807 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 75487296	 75488100	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37594_PI429285431	0.91044176	A	0.909822	A	1.00042967718143	0	lncRNA	38694-2_{3001..4076}	n346071|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1621|NULL|-1.6550800|-0.2841589	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346071|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1621|NULL|-1.6550800|-0.2841589	chr19	 12206086	 12207161	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80"	NA	inter
CUST_46625_PI429285431	4.0736074	P	3.3777738	P	1.61982010693889	0	lncRNA	50802-1_{1..3000}	"gi|83415190|ref|NR_002453.4| Homo sapiens smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene (LOC595101), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|83415190|ref|NR_002453.4| Homo sapiens smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene (LOC595101), non-coding RNA"	Chr16	 30278914	 30281913	-	595101	NR_002453.4	NA	NA	NA	NA	NA	inter
CUST_51260_PI429285431	4.0156794	P	4.3167577	P	0.811645528999737	0	lncRNA	54867-1_{1..420}	hg19_lincRNAsTranscripts_TCONS_l2_00008959 range=chr15:28951567-28953140 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008959 range=chr15:28951567-28953140 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 28951567	 28951986	-	NA	NA	NA	NA	LOC653720	NA	chr15:28947100-28963140	inter
CUST_4292_PI429285431	1.2901453	A	0.9225188	A	1.29022841936534	0	lncRNA	4247-1_{1..520}	"transcript_id ""ENST00000538294.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000538294.1"" | genecode_v17"	chr12	 65917043	 65917562	-	ENSG00000250748.2	ENST00000538294.1	RP11-230G5.2	RP11-230G5.2-009	NA	NA	NA	inter
CUST_12012_PI429285431	1.002005	A	1.7001177	A	0.616378010826493	0	lncRNA	13593-1_{1..1469}	lnc-PLCB4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLCB4-1:1	chr20	  8947867	  8949335	+	lnc-PLCB4-1	lnc-PLCB4-1:1	XLOC_013455	linc-PLCB4	NA	NA	NA	inter
CUST_43000_PI429285431	2.3266332	A	2.0901191	A	1.17814254232165	0	lncRNA	46165-1_{1..68}	ENST00000516873 ncrna:snoRNA chromosome:GRCh37:1:154260936:154261003:1 gene:ENSG00000252682 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516873 ncrna:snoRNA chromosome:GRCh37:1:154260936:154261003:1 gene:ENSG00000252682 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	154260936	154261003	+	ENSG00000252682	ENST00000516873	NA	NA	NA	NA	NA	inter
CUST_11466_PI429285431	0.922824	A	0.9263324	A	0.997571116953245	0	lncRNA	13031-1_{1..563}	lnc-PER2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PER2-1:1	chr2	239209153	239209715	-	lnc-PER2-1	lnc-PER2-1:1	XLOC_002536	linc-PER2-1	NA	NA	NA	inter
CUST_26661_PI429285431	0.9151125	A	0.9123702	A	1.00190262521205	0	lncRNA	28161-1_{1..598}	lnc-DMRTC1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DMRTC1B-1:1	chrX	 71931799	 71932396	+	lnc-DMRTC1B-1	lnc-DMRTC1B-1:1	ENSG00000231944.1	PHKA1-AS1	PHKA1	NA	chrX:71921799-71934029	inner
CUST_4608_PI429285431	1.0066935	A	1.2179453	A	0.863787413573207	0	lncRNA	4556-1_{1..920}	"transcript_id ""ENST00000587571.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587571.1"" | genecode_v17"	chr13	 44596195	 44597114	+	ENSG00000233725.2	ENST00000587571.1	LINC00284	LINC00284-004	NA	NA	NA	inter
CUST_4858_PI429285431	4.985434	P	5.2203937	P	0.849708734427647	0	lncRNA	4801-1_{1..526}	"transcript_id ""ENST00000553426.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553426.1"" | genecode_v17"	chr14	 62581071	 62581596	+	ENSG00000258403.1	ENST00000553426.1	RP11-355I22.6	RP11-355I22.6-001	NA	NA	NA	inter
CUST_41982_PI429285431	6.836065	P	6.7297626	P	1.07646573665313	0	lncRNA	43806-1_{1..77}	ENST00000577898 ncrna:miRNA chromosome:GRCh37:10:20840899:20840975:1 gene:ENSG00000265372 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577898 ncrna:miRNA chromosome:GRCh37:10:20840899:20840975:1 gene:ENSG00000265372 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 20840899	 20840975	+	ENSG00000265372	ENST00000577898	NA	NA	NA	NA	NA	inter
CUST_48959_PI429285431	0.9438871	A	0.9240213	A	1.01386516530933	0	lncRNA	52798-1_{1..1532}	hg19_lincRNAsTranscripts_TCONS_l2_00019040 range=chr3:185677628-185694029 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019040 range=chr3:185677628-185694029 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	185677628	185679159	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35295_PI429285431	9.20959	P	9.113423	P	1.06892971862846	0	lncRNA	36698-1_{1..2366}	n342315|AK056250|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4807|NULL|-0.7384380|-0.2052721	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342315|AK056250|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4807|NULL|-0.7384380|-0.2052721	chr1	155201062	155203427	-	NA	NA	NA	NA	GBA	"hg19_refFlat_MTX1:range=chr1:155178596-1551834895'pad=0,hg19_refFlat_MTX1:range=chr1:155178596-1551834895'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.10chr1:155204239-155213428"	NA	inter
CUST_10078_PI429285431	3.692468	P	3.4063265	P	1.21937468487812	0	lncRNA	11605-1_{1..410}	lnc-MPPED2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MPPED2-1:1	chr11	 30383338	 30383747	-	lnc-MPPED2-1	lnc-MPPED2-1:1	XLOC_009403	linc-KCNA4-2	MPPED2	NA	chr11:30389607-30393421	inter
CUST_46329_PI429285431	3.1991677	P	1.3204856	A	3.67738977701076	0	lncRNA	50557-1_{1..2051}	"gi|354623057|ref|NR_045406.1| Homo sapiens HIF1A antisense RNA 2 (HIF1A-AS2), antisense RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|354623057|ref|NR_045406.1| Homo sapiens HIF1A antisense RNA 2 (HIF1A-AS2), antisense RNA"	NA	NA	NA	NA	NA	NR_045406.1	NA	NA	NA	"hg19_refFlat_HIF1A:range=chr14:62162523-622138035'pad=0,hg19_refFlat_HIF1A:range=chr14:62162523-622138035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_HIF1A:range=chr14:62164569-622138035'pad=0,hg19_refFlat_HIF1A:range=chr14:62164569-622138035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30"	NA	Unknown
CUST_30327_PI429285431	6.764675	P	6.9612894	P	0.872595899902322	0	lncRNA	32103-1_{1..577}	n335242|AY545556|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255370|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255370|2.4487100|-0.1269874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335242|AY545556|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255370|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255370|2.4487100|-0.1269874	chr1	  9794130	  9794706	-	NA	NA	NA	NA	CLSTN1	NA	chr1:9789079-9806076	inner
CUST_42801_PI429285431	3.8309796	P	3.8470552	P	0.988919093757129	0	lncRNA	45796-1_{1..78}	ENST00000364021 ncrna:snoRNA chromosome:GRCh37:10:89754375:89754452:-1 gene:ENSG00000200891 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364021 ncrna:snoRNA chromosome:GRCh37:10:89754375:89754452:-1 gene:ENSG00000200891 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	 89754375	 89754452	-	ENSG00000200891	ENST00000364021	NA	NA	NA	NA	NA	inter
CUST_21926_PI429285431	1.0148709	A	1.2533096	A	0.847662165218319	0	lncRNA	23534-1_{1..539}	lnc-DHX57-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DHX57-2:1	chr2	 39220551	 39221089	-	lnc-DHX57-2	lnc-DHX57-2:1	ENSG00000229692.1	SOS1-IT1	SOS1	NA	chr2:39210551-39230998	inner
CUST_42652_PI429285431	8.14111	P	8.1256485	P	1.01077472890112	0	lncRNA	45546-1_{1..84}	ENST00000516429 ncrna:snoRNA chromosome:GRCh37:2:4874591:4874674:-1 gene:ENSG00000252238 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516429 ncrna:snoRNA chromosome:GRCh37:2:4874591:4874674:-1 gene:ENSG00000252238 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	  4874591	  4874674	-	ENSG00000252238	ENST00000516429	NA	NA	NA	NA	NA	inter
CUST_32223_PI429285431	4.870196	P	5.126198	P	0.83740532661734	0	lncRNA	33915-1_{1..1024}	n338796|BC038529|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1219|NULL|-1.1407600|-0.3549048	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n338796|BC038529|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1219|NULL|-1.1407600|-0.3549048	chr13	 91145541	 91146564	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36719_PI429285431	0.89930433	A	1.1236773	A	0.855966968702447	0	lncRNA	37897-1_{1..1751}	n345204|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_753|NULL|-1.3493500|-0.2606785	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345204|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_753|NULL|-1.3493500|-0.2606785	chr13	 80446720	 80448470	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12096_PI429285431	1.1105293	A	1.8298335	A	0.607390310939116	0	lncRNA	13692-1_{1..1258}	lnc-FAM209B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM209B-1:1	chr20	 55129744	 55131001	+	lnc-FAM209B-1	lnc-FAM209B-1:1	XLOC_013577	linc-TFAP2C-3	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60"	NA	inter
CUST_35201_PI429285431	1.2132056	A	1.3398048	A	0.915988124839422	0	lncRNA	36602-1_{1..1546}	n342185|AK097676|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4675|NULL|-1.0589800|-0.1189844	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342185|AK097676|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4675|NULL|-1.0589800|-0.1189844	chr6	170575756	170577301	-	NA	NA	NA	NA	DLL1	NA	chr6:170591294-170595850	inter
CUST_120_PI429201921	7.5076456	P	7.610951	P	0.930897739882806	0	lncRNA	115-2_{3001..3412}	TC17002477.hg.1	 TCONS_l2_00011082-XLOC_l2_005978 // Broad TUCP // linc-AURKB chr17:-:8123996-8126355 // chr17 // 100 // 100 // 0 // --- // 0///TCONS_l2_00011614-XLOC_l2_005978 // Broad TUCP // linc-AURKB chr17:-:8123948-8127361 // chr17 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr17:-:8123948-8127361	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00011614-XLOC_l2_005978	linc-AURKB	chr17	  8123948	  8127361	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29246_PI429285431	2.9934049	A	2.8663037	A	1.09209714984577	0	lncRNA	30997-1_{1..337}	n332330|FJ895880|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558989|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558989|0.7996950|-0.2204562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332330|FJ895880|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558989|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558989|0.7996950|-0.2204562	chr20	 23421034	 23421370	+	NA	NA	NA	NA	CST11	NA	chr20:23431041-23433482	inner
CUST_25049_PI429285431	1.4739902	A	1.6624166	A	0.877562388728781	0	lncRNA	26588-1_{1..582}	lnc-PPP1R3A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP1R3A-2:1	chr7	114059890	114060471	-	lnc-PPP1R3A-2	lnc-PPP1R3A-2:1	ENSG00000224595.1	AC073626.2	FOXP2	NA	chr7:114049890-114069930	inner
CUST_17649_PI429285431	0.92035055	A	1.0810112	A	0.894615307997427	0	lncRNA	19378-1_{1..772}	lnc-CDH11-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH11-1:5	chr16	 65209069	 65209840	-	lnc-CDH11-1	lnc-CDH11-1:5	XLOC_011976	linc-CDH11-6	NA	NA	NA	inter
CUST_7059_PI429285431	0.9058749	A	0.90263295	A	1.0022496752325	0	lncRNA	7004-1_{1..460}	"transcript_id ""ENST00000448761.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448761.1"" | genecode_v17"	chrX	 51244942	 51245401	-	ENSG00000234766.1	ENST00000448761.1	RP11-56H2.2	RP11-56H2.2-001	NUDT11	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50chrX:51234942-51239459"	NA	inter
LNCA_21_P0003894	2.2244368	A	2.8610718	A	0.643211452806416	0	lncRNA	ENST00000508563	NA	NA	NA	NA	XLOC_003940	NA	ENST00000508563	THC2697405	NA	"BROAD Institute lincRNA (XLOC_003940), lincRNA [TCONS_00009042]"	chr4:43459639-43459580	hs|4p13	Agilent_HUMAN_G3V2	ENST00000508563	ENST00000508563	chr4	 43459580	 43459639	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16519_PI429285431	0.9184192	A	0.9237579	A	0.996306333577412	0	lncRNA	18219-2_{3001..3330}	lnc-CDK5R2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK5R2-1:3	chr2	219845204	219845533	+	lnc-CDK5R2-1	lnc-CDK5R2-1:3	XLOC_001866	linc-FAM134A	FEV	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr2:219845809-219850379"	NA	inter
CUST_24028_PI429285431	0.9186168	A	0.9098627	A	1.00608632660783	0	lncRNA	25580-1_{1..302}	lnc-TMX3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMX3-1:1	chr18	 66421737	 66422038	-	lnc-TMX3-1	lnc-TMX3-1:1	ENSG00000263637.1	RP11-106E15.1	CCDC102B	NA	chr18:66411737-66431820	inner
CUST_25166_PI429285431	1.1865034	A	1.9107969	A	0.605293389349966	0	lncRNA	26702-1_{1..147}	lnc-TIMP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMP3-1:1	chr22	 33180883	 33181029	+	lnc-TIMP3-1	lnc-TIMP3-1:1	ENSG00000229673.1	LL22NC01-116C6.1	SYN3	NA	chr22:33170883-33190968	inner
CUST_8951_PI429285431	0.9503948	A	0.9558282	A	0.99624093714188	0	lncRNA	10485-1_{1..2001}	lnc-GUSB-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GUSB-5:1	chr7	 65235454	 65237454	-	lnc-GUSB-5	lnc-GUSB-5:1	ENSG00000248460	ENST00000509603	NA	"hg19_refFlat_CCT6A:range=chr7:56119542-561307785'pad=0,hg19_refFlat_CCT6A:range=chr7:56119542-561307785'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70"	NA	inter
CUST_34111_PI429285431	5.477337	P	6.144873	P	0.629581040231969	0	lncRNA	35634-1_{1..2967}	n340941|AB029488|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3406|NULL|1.5796400|-0.1788863	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n340941|AB029488|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3406|NULL|1.5796400|-0.1788863	chr11	  2316869	  2319835	-	NA	NA	NA	NA	TSPAN32	NA	chr11:2323243-2333290	inner
CUST_2101_PI429285431	0.9026781	A	1.3133844	A	0.752255002169788	0	lncRNA	2092-1_{1..238}	"transcript_id ""ENST00000512978.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512978.1"" | genecode_v17"	chr5	 18704542	 18704779	-	ENSG00000248693.1	ENST00000512978.1	CTD-2023M8.1	CTD-2023M8.1-001	NA	NA	NA	inter
CUST_23201_PI429285431	8.063451	P	7.9114485	P	1.11111065406147	0	lncRNA	24773-1_{1..679}	lnc-ESCO1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ESCO1-2:1	chr18	 19030844	 19031522	-	lnc-ESCO1-2	lnc-ESCO1-2:1	ENSG00000265751.1	RP11-296E23.1	GREB1L	NA	chr18:19020844-19040978	inner
CUST_30406_PI429285431	0.9513526	A	0.9184675	A	1.02305598763965	0	lncRNA	32186-1_{1..284}	n335535|BC070230|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264188_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264188_05|-0.9597930|-0.1701570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335535|BC070230|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264188_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264188_05|-0.9597930|-0.1701570	chr6	  4683663	  4683946	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40183_PI429285431	3.2032838	P	3.3925745	P	0.87703680986457	0	lncRNA	41017-1_{1..2542}	n407964|NR_027679|lncRNA|Homosapiens||RefGeneNoncode|NR_027679||2.7578200|-0.2556557	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407964|NR_027679|lncRNA|Homosapiens||RefGeneNoncode|NR_027679||2.7578200|-0.2556557	chr17	  5322960	  5325501	+	NA	NA	NA	NA	RPAIN	NA	chr17:5322961-5336340	inter
CUST_49374_PI429285431	3.5730038	P	2.926063	A	1.56584433784796	0	lncRNA	53188-1_{1..672}	hg19_lincRNAsTranscripts_TCONS_l2_00023062 range=chr5:118070910-118073917 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023062 range=chr5:118070910-118073917 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	118070910	118071581	-	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60"	NA	inter
CUST_8916_PI429285431	2.0472283	A	1.9271196	A	1.08681674575606	0	lncRNA	10451-1_{1..1733}	lnc-AC015804.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC015804.1-3:1	chr17	 75468546	 75470278	-	lnc-AC015804.1-3	lnc-AC015804.1-3:1	ENSG00000250022	ENST00000508979	9-Sep	NA	chr17:75458546-75478852	inner
CUST_44394_PI429285431	2.2971795	A	1.7721072	A	1.43900569331388	0	lncRNA	49011-2_{3001..4228}	"gi|334085192|ref|NR_038304.1| Homo sapiens uncharacterized LOC100505702 (LOC100505702), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|334085192|ref|NR_038304.1| Homo sapiens uncharacterized LOC100505702 (LOC100505702), transcript variant 2, non-coding RNA"	Chr4	 79570148	 79571375	+	100505702	NR_038304.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10"	NA	inter
CUST_27952_PI429285431	0.9197537	A	0.91880566	A	1.0006573472111	0	lncRNA	29556-1_{1..515}	n325200|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329372|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329372|-0.2931850|-0.3382300	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325200|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329372|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329372|-0.2931850|-0.3382300	chr2	105127012	105127526	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50"	NA	inter
CUST_35492_PI429285431	4.285323	P	5.017815	P	0.601863403092158	0	lncRNA	36900-1_{1..893}	n342590|BC066966|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5090|NULL|-0.7414080|-0.2032906	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342590|BC066966|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5090|NULL|-0.7414080|-0.2032906	chr10	 29698464	 29699356	+	NA	NA	NA	NA	SVIL	"hg19_refFlat_SVIL:range=chr10:29747176-298439875'pad=0,hg19_refFlat_SVIL:range=chr10:29747176-298439875'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90chr10:29746277-29786785"	NA	inner
CUST_37974_PI429285431	4.4933796	P	5.1599255	P	0.630013260567149	0	lncRNA	39062-1_{1..1856}	n346526|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2076|NULL|-1.2984100|-0.1344442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346526|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2076|NULL|-1.2984100|-0.1344442	chr9	139534589	139536444	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60"	NA	inter
CUST_25508_PI429285431	1.0333066	A	2.7480385	A	0.304659176313924	0	lncRNA	27038-1_{1..743}	lnc-C2orf42-3:35	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:35	chr2	 70312679	 70313421	-	lnc-C2orf42-3	lnc-C2orf42-3:35	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_22736_PI429285431	3.179147	P	2.0667224	A	2.16208703491792	0	lncRNA	24319-2_{3001..5692}	lnc-CLSTN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-CLSTN2-1:1	chr3	140293548	140296239	+	lnc-CLSTN2-1	lnc-CLSTN2-1:1	ENSG00000261179.1	RP11-13L2.4	CLSTN2	NA	chr3:140280548-140286919	inter
CUST_34875_PI429285431	4.2096853	P	4.433624	P	0.856224664692918	0	lncRNA	36301-1_{1..380}	n341789|AF085951|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4266|NULL|-0.8526410|-0.1933203	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341789|AF085951|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4266|NULL|-0.8526410|-0.1933203	chr9	130870855	130871234	-	NA	NA	NA	NA	SLC25A25	NA	chr9:130860855-130871524	inner
CUST_50505_PI429285431	0.92442775	A	0.92982733	A	0.99626429153242	0	lncRNA	54201-1_{1..307}	hg19_lincRNAsTranscripts_TCONS_l2_00030329 range=chrX:108811931-108812305 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030329 range=chrX:108811931-108812305 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	108811931	108812237	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_434_PI429285431	0.91791177	A	0.9158867	A	1.00140465716896	0	lncRNA	426-1_{1..439}	"transcript_id ""ENST00000422157.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422157.1"" | genecode_v17"	chr1	147496676	147497114	+	ENSG00000229952.1	ENST00000422157.1	RP6-74O6.3	RP6-74O6.3-002	NA	NA	NA	inter
CUST_25098_PI429285431	1.7422522	A	0.9180275	A	1.77058327633359	0	lncRNA	26635-1_{1..671}	lnc-C9orf95-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C9orf95-1:1	chr9	 77630661	 77631331	-	lnc-C9orf95-1	lnc-C9orf95-1:1	ENSG00000229587.1	RP11-197P3.5	C9orf41	NA	chr9:77620661-77640953	inner
CUST_46327_PI429285431	7.307539	P	6.949728	P	1.28148003310578	0	lncRNA	50555-1_{1..1947}	"gi|289577105|ref|NR_033344.1| Homo sapiens solute carrier family 38, member 6 (SLC38A6), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|289577105|ref|NR_033344.1| Homo sapiens solute carrier family 38, member 6 (SLC38A6), transcript variant 3, non-coding RNA"	Chr14	 61447965	 61449911	+	145389	NR_033344.1	NA	NA	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80"	NA	inter
CUST_3533_PI429285431	2.474696	A	2.2605283	A	1.16003448998506	0	lncRNA	3502-1_{1..256}	"transcript_id ""ENST00000456032.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456032.1"" | genecode_v17"	chr9	121502841	121503096	+	ENSG00000235201.1	ENST00000456032.1	RP11-127L21.1	RP11-127L21.1-001	NA	NA	NA	inter
LNCA_21_P0004152	0.9751795	A	0.92068756	A	1.03849332271593	0	lncRNA	ENST00000514662	NA	NA	NA	NA	XLOC_004920	NA	ENST00000514662	NA	NA	"BROAD Institute lincRNA (XLOC_004920), lincRNA [TCONS_00009721]"	chr5:88762416-88762357	hs|5q14.3	Agilent_HUMAN_G3V2	ENST00000514662	ENST00000514662	chr5	 88762357	 88762416	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43462_PI429285431	1.3218572	A	1.1097865	A	1.15834957031019	0	lncRNA	48266-1_{1..669}	"gi|389565499|ref|NR_047498.1| Homo sapiens PDZK1IP1 antisense RNA 1 (tail to tail) (PDZK1IP1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|389565499|ref|NR_047498.1| Homo sapiens PDZK1IP1 antisense RNA 1 (tail to tail) (PDZK1IP1-AS1), non-coding RNA"	Chr1	 47644922	 47645590	+	100874253	NR_047498.1	NA	NA	NA	NA	NA	inter
CUST_33975_PI429285431	5.566982	P	6.036474	P	0.722218859808345	0	lncRNA	35512-1_{1..1094}	n340784|AF311308|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3247|NULL|-1.1773200|-0.1141090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340784|AF311308|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3247|NULL|-1.1773200|-0.1141090	chr5	180237296	180238389	+	NA	NA	NA	NA	MGAT1	NA	chr5:180227296-180237137	inter
CUST_45350_PI429285431	5.693534	P	5.9633193	P	0.829442973254785	0	lncRNA	49787-1_{1..703}	"gi|225903391|ref|NR_027421.1| Homo sapiens family with sequence similarity 27, member C (FAM27C), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225903391|ref|NR_027421.1| Homo sapiens family with sequence similarity 27, member C (FAM27C), non-coding RNA"	Chr9	 44990236	 44990938	+	100132948	NR_027421.1	NA	NA	NA	NA	NA	inter
CUST_13613_PI429285431	1.159917	A	2.5429735	A	0.383405649379464	0	lncRNA	15252-1_{1..573}	lnc-MAP3K4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP3K4-1:1	chr6	161390750	161391322	+	lnc-MAP3K4-1	lnc-MAP3K4-1:1	XLOC_005529	linc-MAP3K4-1	NA	NA	NA	inter
CUST_21290_PI429285431	8.415704	P	8.389709	P	1.01818167100973	0	lncRNA	22915-1_{1..520}	lnc-PDZD8-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDZD8-2:3	chr10	119301608	119302127	-	lnc-PDZD8-2	lnc-PDZD8-2:3	ENSG00000229847.2	EMX2OS	EMX2	NA	chr10:119301956-119309057	inter
CUST_39854_PI429285431	5.0003157	P	4.3814273	P	1.53569147134748	0	lncRNA	40753-1_{1..2770}	n406489|NR_023922|lncRNA|Homosapiens||RefGeneNoncode|NR_023922||-0.3714430|-0.3187955	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406489|NR_023922|lncRNA|Homosapiens||RefGeneNoncode|NR_023922||-0.3714430|-0.3187955	chr14	 24407939	 24410708	-	NA	NA	NA	NA	DHRS4	"hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_DHRS4L2:range=chr14:24458157-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24458157-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_DHRS2:range=chr14:24108074-241145115'pad=0,hg19_refFlat_DHRS2:range=chr14:24108074-241145115'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-26.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_DHRS2:range=chr14:24108074-241144625'pad=0,hg19_refFlat_DHRS2:range=chr14:24108074-241144625'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.69;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_DHRS4L1:range=chr14:24505710-245201775'pad=0,hg19_refFlat_DHRS4L1:range=chr14:24505710-245201775'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_DHRS4:range=chr14:24422998-244380805'pad=0,hg19_refFlat_DHRS4:range=chr14:24422998-244380805'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90chr14:24422965-24434298"	NA	inner
CUST_31257_PI429285431	0.9249018	A	0.904789	A	1.01403876134122	0	lncRNA	33048-1_{1..2706}	n337713|AK055171|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|95|NULL|-0.3832910|-0.2526585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337713|AK055171|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|95|NULL|-0.3832910|-0.2526585	chr1	 11128527	 11131232	+	NA	NA	NA	NA	EXOSC10	"hg19_refFlat_EXOSC10:range=chr1:11126775-111598885'pad=0,hg19_refFlat_EXOSC10:range=chr1:11126775-111598885'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70chr1:11126675-11143154"	NA	inner
CUST_28483_PI429285431	2.1523902	A	1.0065168	A	2.21280051903505	0	lncRNA	30150-1_{1..921}	n325825|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000104866|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000104866|-0.6902340|-0.2084636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325825|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000104866|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000104866|-0.6902340|-0.2084636	chr11	115872825	115873745	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40830_PI429285431	0.8931674	A	0.91137743	A	0.987457095295852	0	lncRNA	41533-1_{1..2305}	n410600|NR_037853_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037853_4||-0.1199300|-0.3230103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410600|NR_037853_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037853_4||-0.1199300|-0.3230103	chr6	  2828800	  2831104	-	NA	NA	NA	NA	SERPINB1	"hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-27.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40chr6:2833733-2842081"	NA	inter
CUST_14393_PI429285431	1.0650775	A	1.0638819	A	1.00082907025799	0	lncRNA	16055-1_{1..284}	lnc-BPHL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BPHL-2:1	chr6	  3257560	  3257843	+	lnc-BPHL-2	lnc-BPHL-2:1	XLOC_005133	linc-PSMG4	PSMG4	NA	chr6:3259162-3267653	inter
CUST_873_PI429285431	3.116249	A	2.4057071	A	1.63641866747301	0	lncRNA	865-3_{6001..9000}	"transcript_id ""ENST00000418539.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000418539.1"" | genecode_v17"	chr2	 47564199	 47567198	+	ENSG00000236824.1	ENST00000418539.1	BCYRN1	BCYRN1-001	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.20;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.01;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-94.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50"	NA	inter
CUST_14061_PI429285431	2.0614927	A	2.491297	A	0.742362479140965	0	lncRNA	15707-1_{1..1581}	lnc-LRP5-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRP5-1:4	chr11	 68051970	 68053550	+	lnc-LRP5-1	lnc-LRP5-1:4	XLOC_009185	linc-LRP5-1	NA	NA	NA	inter
CUST_39761_PI429285431	0.93670523	A	0.9029634	A	1.02366369961496	0	lncRNA	40679-6_{15001..18000}	n405913|NR_003149|lncRNA|Homosapiens||RefGeneNoncode|NR_003149||40.8024000|-0.2615927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405913|NR_003149|lncRNA|Homosapiens||RefGeneNoncode|NR_003149||40.8024000|-0.2615927	chr5	 89869616	 89872615	+	NA	NA	NA	NA	GPR98	NA	chr5:89854617-90460033	inner
LNCA_21_P0001496	3.8119876	P	4.4208	P	0.655736269843827	0	lncRNA	TCONS_00001483	NA	NA	NA	NA	XLOC_000819	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000819), lincRNA [TCONS_00001483]"	chr1:47640257-47638681	hs|1p33	Agilent_HUMAN_G3V2	TCONS_00001483	TCONS_00001483	chr1	 47638681	 47640257	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4657_PI429285431	5.5492754	P	6.0569286	P	0.703365657094268	0	lncRNA	4603-1_{1..342}	"transcript_id ""ENST00000435156.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435156.1"" | genecode_v17"	chr13	 78849855	 78850196	-	ENSG00000235625.1	ENST00000435156.1	RP11-203P2.2	RP11-203P2.2-001	NA	NA	NA	inter
CUST_15774_PI429285431	1.2294717	A	0.91377217	A	1.24461499250533	0	lncRNA	17464-1_{1..339}	lnc-DMRTA2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRTA2-3:1	chr1	 50723700	 50724038	-	lnc-DMRTA2-3	lnc-DMRTA2-3:1	XLOC_000830	linc-AGBL4-3	NA	NA	NA	inter
CUST_21754_PI429285431	4.481959	P	3.9538596	P	1.44202822209458	0	lncRNA	23364-1_{1..1375}	lnc-C14orf126-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C14orf126-4:1	chr14	 32544625	 32545999	-	lnc-C14orf126-4	lnc-C14orf126-4:1	ENSG00000258655.1	ARHGAP5-AS1	ARHGAP5	NA	chr14:32546495-32555999	inter
CUST_4424_PI429285431	0.90388674	A	1.1618488	A	0.836268391814428	0	lncRNA	4374-1_{1..596}	"transcript_id ""ENST00000552992.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552992.1"" | genecode_v17"	chr12	116955663	116956258	+	ENSG00000258018.1	ENST00000552992.1	RP11-148B3.1	RP11-148B3.1-001	NA	NA	NA	inter
CUST_24499_PI429285431	4.3614388	P	4.3340173	P	1.01918892092404	0	lncRNA	26051-1_{1..3000}	lnc-CDH3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CDH3-4:1	chr16	 68595964	 68598963	+	lnc-CDH3-4	lnc-CDH3-4:1	ENSG00000262820.1	RP11-615I2.7	ZFP90	NA	chr16:68585964-68601039	inner
CUST_46356_PI429285431	3.305171	P	1.2500477	A	4.15579157293718	0	lncRNA	50580-1_{1..3000}	"gi|387765979|ref|NR_048573.1| Homo sapiens general transcription factor IIA, 1, 19/37kDa (GTF2A1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|387765979|ref|NR_048573.1| Homo sapiens general transcription factor IIA, 1, 19/37kDa (GTF2A1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_048573.1	NA	NA	NA	NA	NA	Unknown
CUST_6072_PI429285431	5.165956	P	5.238083	P	0.951234535762888	0	lncRNA	5996-1_{1..1902}	"transcript_id ""ENST00000581725.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581725.1"" | genecode_v17"	chr18	  6919495	  6921396	-	ENSG00000265933.1	ENST00000581725.1	LINC00668	LINC00668-001	LAMA1	NA	chr18:6926973-6939804	inter
CUST_49742_PI429285431	1.5152576	A	1.7958019	A	0.823280351447717	0	lncRNA	53513-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026539 range=chr7:45763408-45808576 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026539 range=chr7:45763408-45808576 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 45763408	 45766407	-	NA	NA	NA	NA	ADCY1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60chr7:45753408-45762715"	NA	inter
LNCA_21_P0011289	1.4701971	A	2.401008	A	0.524563415975904	0	lncRNA	TCONS_l2_00008413	NA	NA	NA	NA	XLOC_l2_004562	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004562), lincRNA [TCONS_l2_00008413]"	chr15:22570784-22572686	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00008413	TCONS_l2_00008413	chr15	 22570784	 22572686	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28755_PI429285431	5.4531446	P	5.9122567	P	0.727433816705187	0	lncRNA	30459-1_{1..475}	n326155|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096160|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096160|-1.1076600|-0.4948425	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326155|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096160|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096160|-1.1076600|-0.4948425	chr1	241261196	241261670	-	NA	NA	NA	NA	RGS7	NA	chr1:241251196-241287794	inner
CUST_50963_PI429285431	3.411931	P	3.9995918	P	0.665420952945576	0	lncRNA	54604-1_{1..530}	hg19_lincRNAsTranscripts_TCONS_l2_00005785 range=chr12:80419461-80423155 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005785 range=chr12:80419461-80423155 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 80419461	 80419990	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5815_PI429285431	0.9250208	A	0.91690886	A	1.00563860577126	0	lncRNA	5742-1_{1..1629}	"transcript_id ""ENST00000579438.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579438.1"" | genecode_v17"	chr17	 32503557	 32505185	+	ENSG00000264990.1	ENST00000579438.1	RP11-215E13.2	RP11-215E13.2-001	NA	NA	NA	inter
CUST_14305_PI429285431	1.10804	A	0.90063	A	1.15461350090361	0	lncRNA	15965-1_{1..716}	lnc-WNK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WNK1-1:1	chr12	   837176	   837891	+	lnc-WNK1-1	lnc-WNK1-1:1	XLOC_009614	linc-WNK1	NA	NA	NA	inter
CUST_25575_PI429285431	0.90030706	A	0.9132806	A	0.9910477395813	0	lncRNA	27104-1_{1..515}	lnc-ABCC5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ABCC5-1:1	chr3	183822914	183823428	-	lnc-ABCC5-1	lnc-ABCC5-1:1	ENSG00000238020.1	HTR3E-AS1	HTR3E	"hg19_refFlat_HTR3E:range=chr3:183815318-1838244815'pad=0,hg19_refFlat_HTR3E:range=chr3:183815318-1838244815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_HTR3E:range=chr3:183818161-1838244815'pad=0,hg19_refFlat_HTR3E:range=chr3:183818161-1838244815'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70chr3:183812914-183824783"	NA	inner
CUST_15796_PI429285431	3.8273635	P	3.7890458	P	1.02691566085626	0	lncRNA	17487-1_{1..464}	lnc-ARID1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARID1B-1:1	chr6	156694693	156695156	+	lnc-ARID1B-1	lnc-ARID1B-1:1	XLOC_005515	linc-ARID1B-1	NA	NA	NA	inter
CUST_33014_PI429285431	0.9052588	A	0.8958012	A	1.00657704315306	0	lncRNA	34629-1_{1..2414}	n339696|BC041880|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2141|NULL|-0.5450680|-0.3456165	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339696|BC041880|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2141|NULL|-0.5450680|-0.3456165	chr3	176531942	176534355	-	NA	NA	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10"	NA	inter
CUST_23841_PI429285431	0.90399873	A	0.90402514	A	0.999981694150516	0	lncRNA	25404-1_{1..489}	lnc-RAP1GDS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAP1GDS1-1:1	chr4	 99430953	 99431441	+	lnc-RAP1GDS1-1	lnc-RAP1GDS1-1:1	ENSG00000251523.1	RP11-724M22.1	TSPAN5	NA	chr4:99420953-99441086	inner
CUST_31990_PI429285431	6.6574264	P	6.9299054	P	0.827895739824322	0	lncRNA	33712-1_{1..962}	n338549|BC035840|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|953|NULL|5.6017400|-0.0867320	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338549|BC035840|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|953|NULL|5.6017400|-0.0867320	chr1	228337660	228338621	+	NA	NA	NA	NA	GUK1	NA	chr1:228327660-228336656	inner
CUST_18132_PI429285431	0.91594446	A	1.1055579	A	0.876840633130212	0	lncRNA	19867-1_{1..884}	lnc-HARS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HARS-1:1	chr5	140090649	140091532	-	lnc-HARS-1	lnc-HARS-1:1	XLOC_005026	linc-HARS-2	ZMAT2	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-65.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80chr5:140080649-140086239"	NA	inter
CUST_42320_PI429285431	0.9226703	A	0.91904724	A	1.0025144698139	0	lncRNA	44954-1_{1..103}	ENST00000517227 ncrna:snoRNA chromosome:GRCh37:2:146092638:146092740:1 gene:ENSG00000253036 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517227 ncrna:snoRNA chromosome:GRCh37:2:146092638:146092740:1 gene:ENSG00000253036 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	146092638	146092740	+	ENSG00000253036	ENST00000517227	NA	NA	NA	NA	NA	inter
CUST_3644_PI429285431	0.92719984	A	0.91346306	A	1.00956708507493	0	lncRNA	3613-1_{1..486}	"transcript_id ""ENST00000450581.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450581.1"" | genecode_v17"	chr10	 30944418	 30944903	+	ENSG00000230998.1	ENST00000450581.1	RP11-14C22.3	RP11-14C22.3-001	NA	NA	NA	inter
CUST_47877_PI429285431	0.92413867	A	0.9243398	A	0.999860597025072	0	lncRNA	51773-1_{1..2787}	"gi|410171511|ref|XR_171220.1| PREDICTED: Homo sapiens uncharacterized LOC100505828 (LOC100505828), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171511|ref|XR_171220.1| PREDICTED: Homo sapiens uncharacterized LOC100505828 (LOC100505828), misc_RNA"	NA	NA	NA	NA	NA	XR_171220.1	NA	NA	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-25.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20"	NA	Unknown
LNCA_21_P0001808	0.9244468	A	0.9127738	A	1.00812392850618	0	lncRNA	ENST00000454477	NA	BC038187	NA	Hs.385749	XLOC_001307	NA	ENST00000454477	NA	NA	"BROAD Institute lincRNA (XLOC_001307), lincRNA [TCONS_00002791]"	chr2:546608-546667	hs|2p25.3	Agilent_HUMAN_G3V2	ENST00000454477	ENST00000454477	chr2	   546608	   546667	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3927_PI429285431	2.7059267	A	3.3457592	P	0.641787457361469	0	lncRNA	3897-1_{1..546}	"transcript_id ""ENST00000527757.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527757.1"" | genecode_v17"	chr11	 42236345	 42236890	-	ENSG00000255109.1	ENST00000527757.1	CTD-2572N17.1	CTD-2572N17.1-001	NA	NA	NA	inter
CUST_31083_PI429285431	3.4303727	P	3.9459927	P	0.699492260520396	0	lncRNA	32874-1_{1..260}	n337349|DQ426890|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391933|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391933|-1.2031300|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337349|DQ426890|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391933|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391933|-1.2031300|-1.0000000	chr11	 62380337	 62380596	+	NA	NA	NA	NA	EML3	NA	chr11:62370337-62380237	inner
CUST_47162_PI429285431	8.434719	P	8.951393	P	0.698981414102506	0	lncRNA	51240-1_{1..1677}	"gi|288541417|ref|NR_033269.1| Homo sapiens fuzzy homolog (Drosophila) (FUZ), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|288541417|ref|NR_033269.1| Homo sapiens fuzzy homolog (Drosophila) (FUZ), transcript variant 3, non-coding RNA"	Chr19	 50310123	 50311799	-	80199	NR_033269.1	NA	NA	NA	NA	NA	inter
CUST_18247_PI429285431	0.9128602	A	1.6746483	A	0.589764913193994	0	lncRNA	19981-1_{1..1641}	lnc-RP11-181C3.1.1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-181C3.1.1-4:4	chr12	 98147055	 98148695	-	lnc-RP11-181C3.1.1-4	lnc-RP11-181C3.1.1-4:4	ENSG00000257501	RP11-1016B18.1	NA	NA	NA	inter
LNCA_33_P3248957	0.9252105	A	0.91524065	A	1.00693450652933	0	lncRNA	XR_113304	XR_113304	XR_113304	   441493	Hs.496083	LOC441493	uncharacterized LOC441493	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC441493 (LOC441493), miscRNA [XR_113304]"	chrX:47693878-47693819	hs|Xp11.23	Agilent_HUMAN_G3V2	XR_113304	XR_113304	chrX	 47693819	 47693878	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008533	1.7717549	A	1.637173	A	1.09777462728725	0	lncRNA	THC2663037	NA	NA	NA	NA	XLOC_011011	NA	NA	THC2663037	NA	"BROAD Institute lincRNA (XLOC_011011), lincRNA [TCONS_00023103]"	chr14:045552341-045552282	hs|14q21.2	Agilent_HUMAN_G3V2	THC2663037	THC2663037	chr14	 45552282	 45552341	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009869	1.752944	A	2.511583	A	0.591053652034131	0	lncRNA	XR_109589	XR_109589	XR_109589	NA	Hs.134521	LOC100505735	uncharacterized LOC100505735	ENST00000418953	THC2665489	NA	"PREDICTED: Homo sapiens hypothetical LOC100505735 (LOC100505735), miscRNA [XR_109589]"	chr20:61267124-61267183	hs|20q13.33	Agilent_HUMAN_G3V2	XR_109589	XR_109589	chr20	 61267124	 61267183	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2636_PI429285431	3.987122	P	3.4734352	P	1.4276940026701	0	lncRNA	2623-1_{1..464}	"transcript_id ""ENST00000579057.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579057.1"" | genecode_v17"	chr6	135819075	135819538	+	ENSG00000231028.4	ENST00000579057.1	LINC00271	LINC00271-005	AHI1	NA	chr6:135809075-135818903	inter
CUST_10010_PI429285431	0.9492679	A	0.91545063	A	1.02371722943688	0	lncRNA	11536-1_{1..495}	lnc-CDH5-11:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH5-11:1	chr16	 63765687	 63766181	+	lnc-CDH5-11	lnc-CDH5-11:1	XLOC_011750	linc-CDH5-5	NA	NA	NA	inter
CUST_3161_PI429285431	0.92616427	A	1.2785978	A	0.783261781339991	0	lncRNA	3140-1_{1..451}	"transcript_id ""ENST00000520930.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520930.1"" | genecode_v17"	chr8	 67024902	 67025352	+	ENSG00000253190.2	ENST00000520930.1	AC084082.3	AC084082.3-002	NA	NA	NA	inter
CUST_10295_PI429285431	1.0512159	A	0.8968621	A	1.11292301532323	0	lncRNA	11822-1_{1..579}	lnc-SEC22A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEC22A-1:2	chr3	122999318	122999896	+	lnc-SEC22A-1	lnc-SEC22A-1:2	XLOC_002788	linc-KALRN-2	SEC22A	NA	chr3:122989318-122992983	inter
CUST_3450_PI429285431	1.2935036	A	1.9411682	A	0.638312763115872	0	lncRNA	3421-1_{1..594}	"transcript_id ""ENST00000588492.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588492.1"" | genecode_v17"	chr9	 84888374	 84888967	+	ENSG00000228430.4	ENST00000588492.1	RP11-15B24.5	RP11-15B24.5-012	NA	NA	NA	inter
CUST_28652_PI429285431	0.9005148	A	0.90269953	A	0.998486806593617	0	lncRNA	30344-1_{1..3000}	n326031|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047376|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047376|0.0883255|-0.3108961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326031|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047376|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047376|0.0883255|-0.3108961	chr10	 29118122	 29121121	-	NA	NA	NA	NA	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80"	NA	inter
CUST_41248_PI429285431	0.8999266	A	1.2485101	A	0.785354814585952	0	lncRNA	42190-1_{1..96}	ENST00000385279 ncrna:miRNA chromosome:GRCh37:7:93112072:93112167:-1 gene:ENSG00000208014 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385279 ncrna:miRNA chromosome:GRCh37:7:93112072:93112167:-1 gene:ENSG00000208014 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 93112072	 93112167	-	ENSG00000208014	ENST00000385279	NA	NA	CALCR	NA	chr7:93102072-93122167	inner
CUST_47926_PI429285431	1.2864852	A	1.4250786	A	0.908404400569615	0	lncRNA	51817-1_{1..594}	"gi|410172214|ref|XR_171665.1| PREDICTED: Homo sapiens uncharacterized LOC100505913 (LOC100505913), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172214|ref|XR_171665.1| PREDICTED: Homo sapiens uncharacterized LOC100505913 (LOC100505913), misc_RNA"	NA	NA	NA	NA	NA	XR_171665.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007692	5.4732966	P	5.141004	P	1.25901249406164	0	lncRNA	TCONS_00020729	NA	NA	NA	NA	XLOC_010028	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010028), lincRNA [TCONS_00020729]"	chr12:20417065-20399538	hs|12p12.2	Agilent_HUMAN_G3V2	TCONS_00020729	TCONS_00020729	chr12	 20399538	 20417065	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14388_PI429285431	1.5657355	A	1.4893149	A	1.05439877548444	0	lncRNA	16050-1_{1..411}	lnc-MALT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MALT1-1:1	chr18	 56327664	 56328074	+	lnc-MALT1-1	lnc-MALT1-1:1	XLOC_012694	linc-MALT1-1	MALT1	NA	chr18:56317664-56337937	inter
CUST_6989_PI429285431	0.91907835	A	0.9266287	A	0.994780167107011	0	lncRNA	6937-1_{1..1463}	"transcript_id ""ENST00000569912.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569912.1"" | genecode_v17"	chr22	 40439072	 40440534	-	ENSG00000261202.1	ENST00000569912.1	RP3-496C20.1	RP3-496C20.1-001	TNRC6B	NA	chr22:40440821-40450534	inter
LNCA_21_P0006815	0.9328369	A	0.92535	A	1.00520301252743	0	lncRNA	TCONS_00018089	NA	NA	NA	NA	XLOC_008357	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008357), lincRNA [TCONS_00018089]"	chr10:3985377-3990730	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_00018089	TCONS_00018089	chr10	  3985377	  3990730	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21399_PI429285431	1.1227869	A	1.0090234	A	1.08204725072884	0	lncRNA	23020-1_{1..1156}	lnc-AGGF1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AGGF1-3:2	chr5	 76435086	 76436241	+	lnc-AGGF1-3	lnc-AGGF1-3:2	ENSG00000250802.2	CTC-564N23.3	NA	NA	NA	inter
CUST_27560_PI429285431	2.4071448	A	2.8223166	A	0.749930185624904	0	lncRNA	29139-1_{1..287}	n324750|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000318064|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000318064|-1.2170400|-0.3128847	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324750|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000318064|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000318064|-1.2170400|-0.3128847	chr22	 18034545	 18034831	+	NA	NA	NA	NA	CECR2	NA	chr22:18024545-18033845	inter
LNCA_21_P0003802	0.9486873	A	2.1441903	A	0.436634187583571	0	lncRNA	TCONS_00008667	NA	NA	NA	NA	XLOC_004182	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004182), lincRNA [TCONS_00008667]"	chr4:178141596-178141537	hs|4q34.3	Agilent_HUMAN_G3V2	TCONS_00008667	TCONS_00008667	chr4	178141537	178141596	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13343_PI429285431	9.211831	P	9.312888	P	0.932349649143884	0	lncRNA	14980-1_{1..207}	lnc-DR1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DR1-1:2	chr1	 93798626	 93798832	+	lnc-DR1-1	lnc-DR1-1:2	XLOC_000294	linc-DR1	NA	NA	NA	inter
CUST_30354_PI429285431	1.1241696	A	0.9255246	A	1.14761998741516	0	lncRNA	32130-1_{1..331}	n335448|AY684333|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257116_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257116_07|-1.3628000|-0.4680680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335448|AY684333|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257116_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257116_07|-1.3628000|-0.4680680	chr6	  3651699	  3652029	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50325_PI429285431	6.6840334	P	6.942694	P	0.835863576171138	0	lncRNA	54043-1_{1..422}	hg19_lincRNAsTranscripts_TCONS_l2_00029049 range=chr9:132044722-132056520 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029049 range=chr9:132044722-132056520 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132044722	132045143	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004211	0.96451944	A	0.9317585	A	1.02296794604934	0	lncRNA	TCONS_00009850	NA	NA	NA	NA	XLOC_004262	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004262), lincRNA [TCONS_00009850]"	chr5:3419368-3419427	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00009850	TCONS_00009850	chr5	  3419368	  3419427	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10222_PI429285431	2.2028985	A	1.6526773	A	1.46431019285973	0	lncRNA	11747-1_{1..2110}	lnc-HSP90AA1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HSP90AA1-3:1	chr14	102418945	102421054	-	lnc-HSP90AA1-3	lnc-HSP90AA1-3:1	XLOC_011138	linc-RTL1-1	NA	NA	NA	inter
CUST_32503_PI429285431	5.1552415	P	5.0750947	P	1.05712560185384	0	lncRNA	34170-1_{1..1899}	n339107|AK093315|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1537|NULL|-1.0269000|-0.1733839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339107|AK093315|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1537|NULL|-1.0269000|-0.1733839	chr2	207117170	207119068	+	NA	NA	NA	NA	ZDBF2	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chr2:207107170-207139280"	NA	inter
CUST_15501_PI429285431	0.9375529	A	0.92299217	A	1.01014383231464	0	lncRNA	17191-1_{1..303}	lnc-PTPRU-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPRU-4:1	chr1	 30464875	 30465177	+	lnc-PTPRU-4	lnc-PTPRU-4:1	XLOC_000116	linc-ZCCHC17-7	NA	NA	NA	inter
CUST_23768_PI429285431	1.306267	A	0.9124119	A	1.31389965634755	0	lncRNA	25331-1_{1..800}	lnc-SETD6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SETD6-3:1	chr16	 60398926	 60399725	+	lnc-SETD6-3	lnc-SETD6-3:1	ENSG00000261436.1	RP11-354I13.2	LOC729159	NA	chr16:60392359-60393696	inter
CUST_39709_PI429285431	2.343198	A	2.0571394	A	1.21930461930344	0	lncRNA	40645-1_{1..2073}	n405612|NR_002773|lncRNA|Homosapiens||RefGeneNoncode|NR_002773||8.0554900|-0.2038314	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405612|NR_002773|lncRNA|Homosapiens||RefGeneNoncode|NR_002773||8.0554900|-0.2038314	chr17	 41019161	 41021233	+	NA	NA	NA	NA	AOC3	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20chr17:41009161-41010141"	NA	inter
CUST_49498_PI429285431	0.9095515	A	0.9070323	A	1.00174770183101	0	lncRNA	53288-1_{1..356}	hg19_lincRNAsTranscripts_TCONS_l2_00024062 range=chr6:17018288-17034204 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024062 range=chr6:17018288-17034204 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 17018288	 17018643	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48898_PI429285431	2.4364855	A	2.4632812	A	0.981598058082327	0	lncRNA	52738-1_{1..517}	hg19_lincRNAsTranscripts_TCONS_l2_00018727 range=chr3:107113493-107181743 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018727 range=chr3:107113493-107181743 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	107113493	107114009	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40646_PI429285431	4.4957724	P	4.738613	P	0.845079750139136	0	lncRNA	41385-1_{1..1181}	n410178|NR_036679|lncRNA|Homosapiens||RefGeneNoncode|NR_036679||1.4548500|-0.1450235	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410178|NR_036679|lncRNA|Homosapiens||RefGeneNoncode|NR_036679||1.4548500|-0.1450235	chr7	 99578384	 99579564	+	NA	NA	NA	NA	AZGP1	NA	chr7:99568384-99573735	inter
CUST_384_PI429201921	3.3678122	A	2.6953921	A	1.59374420918721	0	lncRNA	245-2_{3001..6000}	TC22001135.hg.1	TCONS_l2_00018274-XLOC_l2_009405 // Broad TUCP // linc-MPPED1-1 chr22:+:43796336-43805687 // chr22 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00017796-XLOC_l2_009405 // Broad TUCP // linc-MPPED1-1 chr22:+:43800847-43805731 // chr22 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr22:+:43796336-43805687	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00018274-XLOC_l2_009405	linc-MPPED1-1	chr22	 43796336	 43805687	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4609_PI429285431	2.1068668	A	2.746073	A	0.642066129383609	0	lncRNA	4557-1_{1..567}	"transcript_id ""ENST00000591799.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591799.1"" | genecode_v17"	chr13	 44596595	 44597161	+	ENSG00000233725.2	ENST00000591799.1	LINC00284	LINC00284-003	NA	NA	NA	inter
CUST_30533_PI429285431	0.93552095	A	0.9704536	A	0.976077326382008	0	lncRNA	32313-1_{1..374}	n335701|CR620385|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000299580|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000299580|2.1578900|-0.0545866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335701|CR620385|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000299580|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000299580|2.1578900|-0.0545866	chr2	 90077751	 90078124	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23501_PI429285431	1.8527262	A	2.0032854	A	0.900901198501744	0	lncRNA	25068-1_{1..322}	lnc-AC069257.9.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC069257.9.1-3:1	chr3	196050331	196050652	+	lnc-AC069257.9.1-3	lnc-AC069257.9.1-3:1	ENSG00000235897.1	TM4SF19-AS1	TM4SF19	NA	chr3:196050417-196060544	inner
CUST_33892_PI429285431	3.3742929	P	3.7884943	P	0.750434780867601	0	lncRNA	35436-1_{1..1799}	n340684|BC050302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3147|NULL|-0.7315850|-0.1929871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340684|BC050302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3147|NULL|-0.7315850|-0.1929871	chr17	 42299282	 42301080	+	NA	NA	NA	NA	UBTF	NA	chr17:42289282-42298250	inter
LNCA_21_P0009364	1.0288153	A	1.0019507	A	1.01879557599664	0	lncRNA	TCONS_00025765	NA	NA	NA	NA	XLOC_012575	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012575), lincRNA [TCONS_00025765]"	chr17:72549976-72549917	hs|17q25.1	Agilent_HUMAN_G3V2	TCONS_00025765	TCONS_00025765	chr17	 72549917	 72549976	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14079_PI429285431	1.1292396	A	1.3356619	A	0.866683834108873	0	lncRNA	15724-1_{1..330}	lnc-ENPP1-4:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENPP1-4:14	chr6	132481907	132482236	+	lnc-ENPP1-4	lnc-ENPP1-4:14	XLOC_005465	linc-TAAR9-1	NA	NA	NA	inter
CUST_16800_PI429285431	5.238914	P	6.3763103	P	0.454579238455406	0	lncRNA	18508-1_{1..307}	lnc-ASB4-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASB4-3:2	chr7	 95236252	 95236558	+	lnc-ASB4-3	lnc-ASB4-3:2	XLOC_006178	linc-DYNC1I1-2	NA	NA	NA	inter
CUST_46547_PI429285431	5.3571935	P	5.6772404	P	0.801043836350467	0	lncRNA	50732-1_{1..1484}	"gi|224465205|ref|NR_027075.1| Homo sapiens uncharacterized LOC283761 (LOC283761), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,UCSC,"	">gi|224465205|ref|NR_027075.1| Homo sapiens uncharacterized LOC283761 (LOC283761), transcript variant 2, non-coding RNA"	Chr15	 90048161	 90049644	-	283761	NR_027075.1	NA	NA	NA	NA	NA	inter
CUST_24863_PI429285431	1.1087253	A	1.0493194	A	1.04203656313195	0	lncRNA	26404-1_{1..631}	lnc-PPAP2B-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-PPAP2B-5:1	chr1	 56410589	 56411219	-	lnc-PPAP2B-5	lnc-PPAP2B-5:1	ENSG00000230250.1	RP11-90C4.2	NA	NA	NA	inter
CUST_47775_PI429285431	1.6473105	A	1.4900234	A	1.11518812193348	0	lncRNA	51704-2_{3001..5922}	"gi|385137079|ref|NR_047617.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 47, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137079|ref|NR_047617.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 47, non-coding RNA"	ChrY	 15363259	 15366180	-	7404	NR_047617.1	NA	NA	NA	NA	NA	inter
CUST_40042_PI429285431	3.208685	P	4.222476	P	0.495243175539872	0	lncRNA	40895-1_{1..2722}	n407234|NR_026702|lncRNA|Homosapiens||RefGeneNoncode|NR_026702||3.9476400|-0.1685031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407234|NR_026702|lncRNA|Homosapiens||RefGeneNoncode|NR_026702||3.9476400|-0.1685031	chr3	 52321835	 52324556	+	NA	NA	NA	NA	WDR82	NA	chr3:52311835-52312659	inter
CUST_41544_PI429285431	4.172796	P	4.1731634	P	0.999745370149547	0	lncRNA	42825-1_{1..150}	ENST00000401387 ncrna:miRNA chromosome:GRCh37:8:6973421:6973570:-1 gene:ENSG00000216206 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401387 ncrna:miRNA chromosome:GRCh37:8:6973421:6973570:-1 gene:ENSG00000216206 gene_biotype:miRNA transcript_biotype:miRNA	chr8	  6973421	  6973570	-	ENSG00000216206	ENST00000401387	NA	NA	FAM90A15	NA	chr8:6980370-6983570	inter
CUST_24515_PI429285431	0.9264854	A	0.9195962	A	1.00478664913477	0	lncRNA	26066-1_{1..567}	lnc-TMEM114-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM114-4:1	chr16	  7664869	  7665435	-	lnc-TMEM114-4	lnc-TMEM114-4:1	ENSG00000261198.1	RP11-26O3.1	RBFOX1	NA	chr16:7654869-7674994	inner
CUST_2480_PI429285431	4.0499444	P	4.1482396	P	0.934136187137813	0	lncRNA	2472-1_{1..656}	"transcript_id ""ENST00000366312.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000366312.2"" | genecode_v17"	chr6	 10434562	 10435217	+	ENSG00000229401.1	ENST00000366312.2	RP1-290I10.7	RP1-290I10.7-002	NA	"hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70"	NA	inter
CUST_32648_PI429285431	1.9638741	A	1.6628617	A	1.23200866254555	0	lncRNA	34302-1_{1..557}	n339273|CR608583|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1705|NULL|-1.2699500|-0.3695039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339273|CR608583|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1705|NULL|-1.2699500|-0.3695039	chr3	 30046907	 30047463	+	NA	NA	NA	NA	RBMS3	NA	chr3:30036907-30051886	inner
CUST_45713_PI429285431	3.2234035	P	3.1521573	P	1.05062382064769	0	lncRNA	50080-1_{1..2266}	"gi|178057319|ref|NR_021489.1| Homo sapiens uncharacterized LOC338651 (LOC338651), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|178057319|ref|NR_021489.1| Homo sapiens uncharacterized LOC338651 (LOC338651), non-coding RNA"	NA	NA	NA	NA	NA	NR_021489.1	NA	NA	NA	"hg19_refFlat_KRTAP5-1:range=chr11:1605643-16064795'pad=0,hg19_refFlat_KRTAP5-1:range=chr11:1605643-16064795'pad=0 3'pad=0 strand=- repeatMasking=none,-95.20;hg19_refFlat_KRTAP5-2:range=chr11:1618947-16194805'pad=0,hg19_refFlat_KRTAP5-2:range=chr11:1618947-16194805'pad=0 3'pad=0 strand=- repeatMasking=none,-103.70;hg19_refFlat_KRTAP5-3:range=chr11:1628899-16296155'pad=0,hg19_refFlat_KRTAP5-3:range=chr11:1628899-16296155'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_KRTAP5-6:range=chr11:1718476-17188655'pad=0,hg19_refFlat_KRTAP5-6:range=chr11:1718476-17188655'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.90;hg19_refFlat_KRTAP5-5:range=chr11:1651071-16517845'pad=0,hg19_refFlat_KRTAP5-5:range=chr11:1651071-16517845'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.50;hg19_refFlat_KRTAP5-8:range=chr11:71249102-712496655'pad=0,hg19_refFlat_KRTAP5-8:range=chr11:71249102-712496655'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_KRTAP5-7:range=chr11:71238347-712388445'pad=0,hg19_refFlat_KRTAP5-7:range=chr11:71238347-712388445'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.70;hg19_refFlat_KRTAP5-9:range=chr11:71259704-712602135'pad=0,hg19_refFlat_KRTAP5-9:range=chr11:71259704-712602135'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.20;hg19_refFlat_KRTAP5-4:range=chr11:1642637-16433235'pad=0,hg19_refFlat_KRTAP5-4:range=chr11:1642637-16433235'pad=0 3'pad=0 strand=- repeatMasking=none,-102.00"	NA	Unknown
CUST_12692_PI429285431	0.9193323	A	0.91196525	A	1.00511951007287	0	lncRNA	14310-1_{1..597}	lnc-C5orf49-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf49-2:4	chr5	  7369546	  7370142	-	lnc-C5orf49-2	lnc-C5orf49-2:4	XLOC_004727	linc-NSUN2-1	NA	NA	NA	inter
CUST_12983_PI429285431	0.92594415	A	0.918185	A	1.00539272160367	0	lncRNA	14609-1_{1..441}	lnc-NTPCR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTPCR-1:1	chr1	233068438	233068878	+	lnc-NTPCR-1	lnc-NTPCR-1:1	XLOC_000619	linc-C1orf57-1	NA	NA	NA	inter
CUST_47186_PI429285431	3.7653189	P	2.6257393	A	2.2031681370483	0	lncRNA	51261-3_{6001..6105}	"gi|156104867|ref|NR_003699.1| Homo sapiens zinc finger protein 525 (ZNF525), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|156104867|ref|NR_003699.1| Homo sapiens zinc finger protein 525 (ZNF525), non-coding RNA"	Chr19	 53874968	 53875072	+	170958	NR_003699.1	NA	NA	NA	NA	NA	inter
CUST_23485_PI429285431	1.2565911	A	1.3740258	A	0.921825319880779	0	lncRNA	25052-1_{1..622}	lnc-RELL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RELL2-1:1	chr5	141005623	141006244	+	lnc-RELL2-1	lnc-RELL2-1:1	ENSG00000228737.1	AC008781.7	DIAPH1	"hg19_refFlat_HDAC3:range=chr5:141001035-1410163575'pad=0,hg19_refFlat_HDAC3:range=chr5:141001035-1410163575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40chr5:140995623-140998622"	NA	inner
CUST_48524_PI429285431	6.746447	P	6.5600047	P	1.13795404721095	0	lncRNA	52374-3_{6001..7459}	hg19_lincRNAsTranscripts_TCONS_l2_00013506 range=chr2:21350513-21367638 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013506 range=chr2:21350513-21367638 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 21356513	 21357971	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28433_PI429285431	0.9498632	A	0.9299081	A	1.01392792352144	0	lncRNA	30092-1_{1..791}	n325757|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044596|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044596|-1.1957700|-0.4098074	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325757|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044596|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044596|-1.1957700|-0.4098074	chr13	 38005479	 38006269	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36297_PI429285431	0.9249403	A	0.93135405	A	0.995564194645903	0	lncRNA	37528-1_{1..1214}	n344823|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_372|NULL|-1.4108400|-0.2445909	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344823|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_372|NULL|-1.4108400|-0.2445909	chr5	 65500952	 65502165	+	NA	NA	NA	NA	NA	"hg19_refFlat_C7orf71:range=chr7:26678764-266861595'pad=0,hg19_refFlat_C7orf71:range=chr7:26678764-266861595'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50"	NA	inter
CUST_12344_PI429285431	4.243908	P	4.5511446	P	0.808188316165728	0	lncRNA	13956-1_{1..566}	lnc-NKAIN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NKAIN3-1:1	chr8	 63925517	 63926082	+	lnc-NKAIN3-1	lnc-NKAIN3-1:1	XLOC_006819	linc-YTHDF3	GGH	NA	chr8:63927638-63935933	inter
CUST_31135_PI429285431	6.882377	P	7.3573236	P	0.719493420884797	0	lncRNA	32930-1_{1..317}	n337462|EF036484|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394737|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394737|-0.9216080|-0.0420773	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337462|EF036484|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394737|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394737|-0.9216080|-0.0420773	chr22	 39827368	 39827684	+	NA	NA	NA	NA	TAB1	NA	chr22:39817368-39833132	inner
CUST_4488_PI429285431	1.137936	A	0.9226762	A	1.16091295234505	0	lncRNA	4437-1_{1..888}	"transcript_id ""ENST00000540684.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000540684.1"" | genecode_v17"	chr12	127214333	127215220	-	ENSG00000256128.1	ENST00000540684.1	RP11-173C20.2	RP11-173C20.2-001	NA	NA	NA	inter
CUST_11244_PI429285431	1.3089181	A	1.534344	A	0.855342481569538	0	lncRNA	12802-1_{1..1043}	lnc-RXRA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RXRA-1:1	chr9	137374507	137375549	+	lnc-RXRA-1	lnc-RXRA-1:1	XLOC_007598	linc-COL5A1-5	NA	NA	NA	inter
CUST_30691_PI429285431	5.999922	P	5.8869047	P	1.08148773200784	0	lncRNA	32473-1_{1..326}	n336183|X92788|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324590|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324590|1.2303700|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336183|X92788|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324590|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324590|1.2303700|-1.0000000	chr14	 22337289	 22337614	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24337_PI429285431	0.98270446	A	0.9963705	A	0.990572146435893	0	lncRNA	25890-1_{1..414}	lnc-CD38-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CD38-1:1	chr4	 16184471	 16184884	+	lnc-CD38-1	lnc-CD38-1:1	ENSG00000249234.1	RP11-452J21.2	TAPT1	NA	chr4:16174471-16194743	inner
CUST_5523_PI429285431	2.1054273	A	2.268404	A	0.893180277391886	0	lncRNA	5454-1_{1..557}	"transcript_id ""ENST00000562980.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562980.1"" | genecode_v17"	chr16	 47999583	 48000139	+	ENSG00000260450.1	ENST00000562980.1	RP11-523L20.1	RP11-523L20.1-001	NA	NA	NA	inter
CUST_14105_PI429285431	0.90214854	A	1.2000704	A	0.81342325399285	0	lncRNA	15752-1_{1..2332}	lnc-ADRBK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADRBK2-1:1	chr22	 25960062	 25962393	+	lnc-ADRBK2-1	lnc-ADRBK2-1:1	XLOC_014188	linc-ADRBK2-1	ADRBK2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40chr22:25960861-25970789"	NA	inter
CUST_10879_PI429285431	3.6328473	P	3.7864158	P	0.899023978189483	0	lncRNA	12419-1_{1..220}	lnc-NACC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NACC1-1:1	chr19	 13228808	 13229027	+	lnc-NACC1-1	lnc-NACC1-1:1	XLOC_012975	linc-NACC1	NACC1	NA	chr19:13229109-13238971	inter
CUST_38265_PI429285431	0.9271295	A	1.3512317	A	0.745302394574653	0	lncRNA	39321-1_{1..605}	n381825|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qtq.1||-0.1687210|-0.2997955	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381825|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qtq.1||-0.1687210|-0.2997955	chr12	  8052069	  8052673	+	NA	NA	NA	NA	NA	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60"	NA	inter
CUST_48064_PI429285431	3.597082	P	2.3843956	A	2.31768805098247	0	lncRNA	51940-1_{1..675}	"gi|310114207|ref|XR_112366.1| PREDICTED: Homo sapiens uncharacterized LOC100134365 (LOC100134365), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310114207|ref|XR_112366.1| PREDICTED: Homo sapiens uncharacterized LOC100134365 (LOC100134365), misc_RNA"	NA	NA	NA	NA	NA	XR_112366.1	NA	NA	NA	NA	NA	Unknown
CUST_37448_PI429285431	3.1776652	A	3.8645818	P	0.621180049325568	0	lncRNA	38547-1_{1..655}	n345897|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1446|NULL|-1.3185800|-0.2490259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345897|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1446|NULL|-1.3185800|-0.2490259	chr15	 52369354	 52370008	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009979	0.9914173	A	1.0780448	A	0.941721583147005	0	lncRNA	TCONS_00028231	NA	NA	NA	NA	XLOC_013575	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013575), lincRNA [TCONS_00028231]"	chr20:54678745-54678804	hs|20q13.2	Agilent_HUMAN_G3V2	TCONS_00028231	TCONS_00028231	chr20	 54678745	 54678804	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44951_PI429285431	4.155864	P	4.258313	P	0.93145049529423	0	lncRNA	49462-1_{1..655}	"gi|256355158|ref|NR_028348.1| Homo sapiens uncharacterized LOC100287704 (LOC100287704), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|256355158|ref|NR_028348.1| Homo sapiens uncharacterized LOC100287704 (LOC100287704), non-coding RNA"	Chr7	 62809448	 62810102	+	100287704	NR_028348.1	NA	NA	NA	NA	NA	inter
CUST_5049_PI429285431	2.895339	P	4.880245	P	0.252629321359833	0	lncRNA	4989-1_{1..866}	"transcript_id ""ENST00000554694.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554694.1"" | genecode_v17"	chr14	102023645	102024510	-	ENSG00000258498.1	ENST00000554694.1	DIO3OS	DIO3OS-003	DIO3	NA	chr14:102027688-102029789	inter
CUST_37887_PI429285431	1.4866438	A	0.92626876	A	1.47465251506677	0	lncRNA	38978-1_{1..3000}	n346423|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1973|NULL|-1.3197400|-0.2951543	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346423|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1973|NULL|-1.3197400|-0.2951543	chr4	185258865	185261864	-	NA	NA	NA	NA	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.51;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90"	NA	inter
CUST_30320_PI429285431	1.3435667	A	2.0267677	A	0.62278193415222	0	lncRNA	32096-1_{1..548}	n335231|AY540016|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255311|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255311|1.7788000|-0.3875447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335231|AY540016|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255311|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255311|1.7788000|-0.3875447	chrX	 10443202	 10443749	-	NA	NA	NA	NA	MID1	NA	chrX:10433202-10545202	inner
CUST_14462_PI429285431	1.2831259	A	1.0163023	A	1.20315590573396	0	lncRNA	16125-1_{1..477}	lnc-DLGAP2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLGAP2-2:2	chr8	  1321806	  1322282	+	lnc-DLGAP2-2	lnc-DLGAP2-2:2	XLOC_006686	linc-DLGAP2-2	NA	NA	NA	inter
CUST_37775_PI429285431	4.2495246	P	4.3708754	P	0.919326479194113	0	lncRNA	38873-1_{1..434}	n346285|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1835|NULL|-1.4955100|-0.1434387	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346285|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1835|NULL|-1.4955100|-0.1434387	chr1	 28907605	 28908038	+	NA	NA	NA	NA	TRNAU1AP	NA	chr1:28897605-28905057	inter
CUST_51886_PI429285431	5.5159926	P	5.524068	P	0.99441819574117	0	lncRNA	55435-1_{1..1045}	hg19_lincRNAsTranscripts_TCONS_l2_00013223 range=chr19:54107291-54110228 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013223 range=chr19:54107291-54110228 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 54107291	 54108335	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36863_PI429285431	1.7226577	A	2.662525	A	0.521280825954723	0	lncRNA	38023-1_{1..650}	n345333|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_882|NULL|-1.3264600|-0.4280640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345333|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_882|NULL|-1.3264600|-0.4280640	chr16	 67589586	 67590235	-	NA	NA	NA	NA	CTCF	NA	chr16:67596310-67602996	inter
CUST_46643_PI429285431	0.90914196	A	0.9012189	A	1.00550695453447	0	lncRNA	50816-1_{1..2566}	"gi|342187193|ref|NR_040677.1| Homo sapiens uncharacterized LOC100507577 (LOC100507577), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|342187193|ref|NR_040677.1| Homo sapiens uncharacterized LOC100507577 (LOC100507577), non-coding RNA"	Chr16	 48389596	 48392161	+	100507577	NR_040677.1	NA	NA	NA	"hg19_refFlat_SIAH1:range=chr16:48395491-483963395'pad=0,hg19_refFlat_SIAH1:range=chr16:48395491-483963395'pad=0 3'pad=0 strand=- repeatMasking=none,-94.10;hg19_refFlat_SIAH1:range=chr16:48395491-483993885'pad=0,hg19_refFlat_SIAH1:range=chr16:48395491-483993885'pad=0 3'pad=0 strand=- repeatMasking=none,-94.10"	NA	inter
CUST_13398_PI429285431	2.3150907	A	2.8918338	A	0.670475676436455	0	lncRNA	15035-1_{1..548}	lnc-ASCL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASCL1-1:1	chr12	103347202	103347749	+	lnc-ASCL1-1	lnc-ASCL1-1:1	XLOC_009857	linc-ASCL1-1	ASCL1	NA	chr12:103351452-103354294	inter
CUST_14678_PI429285431	0.9250256	A	0.92734003	A	0.998397045477062	0	lncRNA	16346-1_{1..258}	lnc-C5orf38-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf38-1:4	chr5	  2929809	  2930066	+	lnc-C5orf38-1	lnc-C5orf38-1:4	XLOC_004256	linc-IRX1-8	NA	NA	NA	inter
CUST_34669_PI429285431	1.9743228	A	1.601629	A	1.29476816593645	0	lncRNA	36121-1_{1..1444}	n341573|BC014866|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4044|NULL|-0.8604940|-0.4589720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341573|BC014866|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4044|NULL|-0.8604940|-0.4589720	chr8	103268619	103270062	+	NA	NA	NA	NA	UBR5	"hg19_refFlat_UBR5:range=chr8:103266530-1034244625'pad=0,hg19_refFlat_UBR5:range=chr8:103266530-1034244625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90chr8:103258619-103280049"	NA	inner
CUST_37609_PI429285431	13.09435	P	12.209776	P	1.84621938801305	0	lncRNA	38708-1_{1..346}	n346087|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1637|NULL|-1.3640500|-0.2038704	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346087|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1637|NULL|-1.3640500|-0.2038704	chr12	 13003865	 13004210	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41985_PI429285431	0.9273313	A	0.9182036	A	1.0063468962454	0	lncRNA	43810-1_{1..82}	ENST00000582704 ncrna:miRNA chromosome:GRCh37:4:37243532:37243613:-1 gene:ENSG00000264319 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582704 ncrna:miRNA chromosome:GRCh37:4:37243532:37243613:-1 gene:ENSG00000264319 gene_biotype:miRNA transcript_biotype:miRNA	chr4	 37243532	 37243613	-	ENSG00000264319	ENST00000582704	NA	NA	KIAA1239	NA	chr4:37246690-37253613	inter
LNCA_21_P0003927	0.96583873	A	0.91865754	A	1.03324414605012	0	lncRNA	ENST00000506471	XR_108588	XR_108588	NA	Hs.246405	XLOC_004452	NA	ENST00000506471	THC2609622	NA	"PREDICTED: Homo sapiens hypothetical LOC100505878 (LOC100505878), miscRNA [XR_108588]"	chr5:86045486-86045545	hs|5q14.3	Agilent_HUMAN_G3V2	ENST00000506471	ENST00000506471	chr5	 86045486	 86045545	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34321_PI429285431	1.4416152	A	2.1298935	A	0.620594019854146	0	lncRNA	35815-1_{1..2144}	n341184|BC040327|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3650|NULL|-0.7590240|-0.4750081	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341184|BC040327|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3650|NULL|-0.7590240|-0.4750081	chr7	 11292739	 11294882	+	NA	NA	NA	NA	THSD7A	NA	chr7:11410062-11435305	inner
CUST_10473_PI429285431	1.1554362	A	1.0713083	A	1.06004675611267	0	lncRNA	11999-1_{1..758}	lnc-PTPRU-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPRU-3:1	chr1	 30184757	 30185514	+	lnc-PTPRU-3	lnc-PTPRU-3:1	XLOC_000115	linc-ZCCHC17-8	NA	NA	NA	inter
CUST_33149_PI429285431	0.95643115	A	0.91209936	A	1.03120544743649	0	lncRNA	34745-1_{1..2557}	n339839|AK130479|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2287|NULL|-0.9790890|-0.2527520	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339839|AK130479|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2287|NULL|-0.9790890|-0.2527520	chr18	 34809541	 34812097	+	NA	NA	NA	NA	KIAA1328	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.42;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr18:34799541-34805288"	NA	inter
CUST_27797_PI429285431	1.4398954	A	2.170052	A	0.602838474077303	0	lncRNA	29382-1_{1..2376}	n325024|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078370|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078370|-0.8948910|-0.3323013	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325024|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078370|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078370|-0.8948910|-0.3323013	chr20	 24128402	 24130777	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27172_PI429285431	7.49428	P	7.4580007	P	1.02546574474695	0	lncRNA	28711-1_{1..445}	n324300|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043192|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043192|-0.5853040|-0.0402736	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324300|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043192|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043192|-0.5853040|-0.0402736	chr6	168443711	168444155	-	NA	NA	NA	NA	KIF25	"hg19_refFlat_KIF25:range=chr6:168430266-1684456765'pad=0,hg19_refFlat_KIF25:range=chr6:168430266-1684456765'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20chr6:168433711-168445769"	NA	inner
LNCA_21_P0009194	3.3124757	P	4.134519	P	0.565640254452854	0	lncRNA	ENST00000425510	NA	NA	NA	NA	XLOC_012505	NA	ENST00000425510	THC2783834	NA	"BROAD Institute lincRNA (XLOC_012505), lincRNA [TCONS_00025233]"	chr17:46714287-46714134	hs|17q21.32	Agilent_HUMAN_G3V2	ENST00000425510	ENST00000425510	chr17	 46714134	 46714287	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17946_PI429285431	10.371466	P	9.937932	P	1.3505377814768	0	lncRNA	19677-1_{1..1230}	lnc-C20orf196-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C20orf196-2:1	chr20	  5493095	  5494324	+	lnc-C20orf196-2	lnc-C20orf196-2:1	XLOC_013449	linc-C20orf196-1	NA	NA	NA	inter
CUST_42990_PI429285431	8.603061	P	8.831226	P	0.853720069453805	0	lncRNA	46148-1_{1..102}	ENST00000516021 ncrna:snoRNA chromosome:GRCh37:6:24166501:24166602:1 gene:ENSG00000251830 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516021 ncrna:snoRNA chromosome:GRCh37:6:24166501:24166602:1 gene:ENSG00000251830 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	 24166501	 24166602	+	ENSG00000251830	ENST00000516021	NA	NA	DCDC2	NA	chr6:24171983-24176602	inter
CUST_9060_PI429285431	7.398574	P	7.8165617	P	0.748467874589427	0	lncRNA	10584-1_{1..766}	lnc-WDR54-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR54-1:3	chr2	 74618605	 74619370	+	lnc-WDR54-1	lnc-WDR54-1:3	ENSG00000237737	AC005041.9	DCTN1	NA	chr2:74608605-74619214	inner
LNCA_21_P0003556	7.1806226	P	7.228565	P	0.967314949160851	0	lncRNA	TCONS_00007948	NA	NA	NA	NA	XLOC_003411	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003411), lincRNA [TCONS_00007948]"	chr4:582501-582560	hs|4p16.3	Agilent_HUMAN_G3V2	TCONS_00007948	TCONS_00007948	chr4	   582501	   582560	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12744_PI429285431	0.9041378	A	0.8969235	A	1.00501309542996	0	lncRNA	14369-1_{1..539}	lnc-PDE1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE1A-1:1	chr2	183539151	183539689	-	lnc-PDE1A-1	lnc-PDE1A-1:1	XLOC_002420	linc-PDE1A	NA	NA	NA	inter
CUST_47207_PI429285431	2.6377842	A	1.950019	A	1.61078640373286	0	lncRNA	51282-1_{1..2620}	"gi|307133742|ref|NR_027334.2| Homo sapiens uncharacterized LOC100131691 (LOC100131691), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|307133742|ref|NR_027334.2| Homo sapiens uncharacterized LOC100131691 (LOC100131691), non-coding RNA"	Chr19	 59070553	 59073172	+	100131691	NR_027334.2	NA	NA	NA	"hg19_refFlat_MZF1:range=chr19:59074527-590827565'pad=0,hg19_refFlat_MZF1:range=chr19:59074527-590827565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_MZF1:range=chr19:59073439-590827565'pad=0,hg19_refFlat_MZF1:range=chr19:59073439-590827565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90"	NA	inter
CUST_25342_PI429285431	0.9215943	A	0.91195905	A	1.00670099826259	0	lncRNA	26873-1_{1..2900}	lnc-JMJD7-PLA2G4B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-JMJD7-PLA2G4B-1:2	chr15	 42187778	 42190677	+	lnc-JMJD7-PLA2G4B-1	lnc-JMJD7-PLA2G4B-1:2	ENSG00000174171.3	RP11-23P13.6	EHD4	"hg19_refFlat_SPTBN5:range=chr15:42140814-421855905'pad=0,hg19_refFlat_SPTBN5:range=chr15:42140814-421855905'pad=0 3'pad=0 strand=- repeatMasking=none,-108.50chr15:42191638-42198133"	NA	inter
CUST_30840_PI429285431	4.2286415	P	4.160808	P	1.04814150356782	0	lncRNA	32628-1_{1..236}	n336806|AB231738|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000329978|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000329978|0.6785240|-0.1494050	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336806|AB231738|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000329978|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000329978|0.6785240|-0.1494050	chr11	122852100	122852335	-	NA	NA	NA	NA	BSX	NA	chr11:122842100-122852379	inner
CUST_34650_PI429285431	1.9785296	A	2.6906242	A	0.610433227863515	0	lncRNA	36102-1_{1..504}	n341548|AX785174|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4019|NULL|-0.8612570|-0.3405529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341548|AX785174|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4019|NULL|-0.8612570|-0.3405529	chr8	 82437215	 82437718	+	NA	NA	NA	NA	FABP12	"hg19_refFlat_FABP12:range=chr8:82437281-824435505'pad=0,hg19_refFlat_FABP12:range=chr8:82437281-824435505'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30chr8:82433755-82443550"	NA	inner
CUST_38285_PI429285431	4.234872	P	5.1967063	P	0.513403736196998	0	lncRNA	39339-1_{1..631}	n381910|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tdk.2||3.7194800|-0.2737446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n381910|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tdk.2||3.7194800|-0.2737446	chr12	 95228173	 95228803	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006834	4.4859586	P	4.4582334	P	1.0194034917432	0	lncRNA	TCONS_00018119	NA	NA	NA	NA	XLOC_008380	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008380), lincRNA [TCONS_00018119]"	chr10:8084775-8084834	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018119	TCONS_00018119	chr10	  8084775	  8084834	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1896_PI429285431	0.9078175	A	0.8975604	A	1.00713501372295	0	lncRNA	1887-1_{1..770}	"transcript_id ""ENST00000511899.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511899.1"" | genecode_v17"	chr4	136034060	136034829	-	ENSG00000248456.1	ENST00000511899.1	RP11-553P9.3	RP11-553P9.3-001	NA	NA	NA	inter
CUST_11730_PI429285431	0.90309435	A	0.9014439	A	1.00114465938721	0	lncRNA	13310-1_{1..410}	lnc-TGDS-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGDS-1:2	chr13	 95165320	 95165729	-	lnc-TGDS-1	lnc-TGDS-1:2	XLOC_010693	linc-DCT-2	NA	NA	NA	inter
CUST_4184_PI429285431	0.90595245	A	1.7346286	A	0.563045668962485	0	lncRNA	4143-1_{1..584}	"transcript_id ""ENST00000538317.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000538317.1"" | genecode_v17"	chr12	 23012409	 23012992	+	ENSG00000256995.2	ENST00000538317.1	RP11-114G22.1	RP11-114G22.1-003	NA	NA	NA	inter
CUST_10770_PI429285431	5.4519625	P	5.867383	P	0.749800919524184	0	lncRNA	12306-1_{1..307}	lnc-AL353698.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL353698.1-1:1	chrX	 56231406	 56231712	+	lnc-AL353698.1-1	lnc-AL353698.1-1:1	XLOC_007992	linc-KLF8	NA	NA	NA	inter
CUST_5309_PI429285431	5.2275634	P	5.5291147	P	0.811379467637227	0	lncRNA	5249-1_{1..682}	"transcript_id ""ENST00000555297.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555297.1"" | genecode_v17"	chr15	 93800427	 93801108	+	ENSG00000258888.1	ENST00000555297.1	RP11-326A13.1	RP11-326A13.1-001	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50"	NA	inter
CUST_8505_PI429285431	4.0281568	P	4.096349	P	0.953832469766322	0	lncRNA	10068-1_{1..2097}	lnc-RP11-80A15.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-80A15.1.1-1:1	chr14	 24970766	 24972862	+	lnc-RP11-80A15.1.1-1	lnc-RP11-80A15.1.1-1:1	ENSG00000251021	ENST00000502977	CMA1	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50chr14:24974712-24977471"	NA	inter
LNCA_21_P0002328	1.1679528	A	1.657516	A	0.712240707917637	0	lncRNA	XR_108408	XR_108408	XR_108408	NA	Hs.333185	LOC100506923	uncharacterized LOC100506923	NA	THC2667101	NA	"PREDICTED: Homo sapiens hypothetical LOC100506923 (LOC100506923), miscRNA [XR_108408]"	chr2:186084946-186085005	hs|2q32.1	Agilent_HUMAN_G3V2	XR_108408	XR_108408	chr2	186084946	186085005	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12408_PI429285431	6.3296795	P	6.477004	P	0.9029233961272	0	lncRNA	14020-1_{1..628}	lnc-TAOK3-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TAOK3-7:2	chr12	119393611	119394238	-	lnc-TAOK3-7	lnc-TAOK3-7:2	XLOC_010216	linc-TAOK3-1	NA	NA	NA	inter
CUST_9921_PI429285431	8.067413	P	7.3092866	P	1.69129274885466	0	lncRNA	11446-1_{1..897}	lnc-AC008132.13.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC008132.13.1-2:1	chr22	 18851301	 18852197	+	lnc-AC008132.13.1-2	lnc-AC008132.13.1-2:1	XLOC_014147	linc-DGCR6-1	LOC100287541	NA	chr22:18842618-18849298	inter
CUST_51174_PI429285431	3.3460982	P	2.860186	A	1.40047108797261	0	lncRNA	54795-1_{1..220}	hg19_lincRNAsTranscripts_TCONS_l2_00007763 range=chr14:62123943-62124460 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007763 range=chr14:62123943-62124460 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 62123943	 62124162	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39702_PI429285431	2.874167	A	3.839858	P	0.512033106990601	0	lncRNA	40639-1_{1..2768}	n405556|NR_002612|lncRNA|Homosapiens||RefGeneNoncode|NR_002612||0.6144250|-0.2899164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405556|NR_002612|lncRNA|Homosapiens||RefGeneNoncode|NR_002612||0.6144250|-0.2899164	chr13	 50556687	 50559454	-	NA	NA	NA	NA	KCNRG	"hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60chr13:50589390-50595058"	NA	inner
CUST_29040_PI429285431	0.9149314	A	0.91219383	A	1.00189934039335	0	lncRNA	30769-1_{1..712}	n326530|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027726|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027726|-1.1462600|-0.3536856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326530|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027726|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027726|-1.1462600|-0.3536856	chr1	 91070013	 91070724	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20877_PI429285431	6.002984	P	6.2076383	P	0.867746592530999	0	lncRNA	22509-1_{1..449}	lnc-RHOC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RHOC-1:1	chr1	113239222	113239670	-	lnc-RHOC-1	lnc-RHOC-1:1	ENSG00000225075.1	RP11-426L16.3	RHOC	"hg19_refFlat_MOV10:range=chr1:113217535-1132431295'pad=0,hg19_refFlat_MOV10:range=chr1:113217535-1132431295'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.40chr1:113243749-113249243"	NA	inner
CUST_11829_PI429285431	0.9140692	A	1.3328532	A	0.748054869416115	0	lncRNA	13411-1_{1..532}	lnc-UCK2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UCK2-3:2	chr1	166308137	166308668	+	lnc-UCK2-3	lnc-UCK2-3:2	XLOC_000451	linc-POGK-1	NA	NA	NA	inter
CUST_27372_PI429285431	0.91204333	A	1.3019081	A	0.763201139246974	0	lncRNA	28935-1_{1..2279}	n324534|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040223|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040223|-0.0462087|-0.2566249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324534|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040223|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040223|-0.0462087|-0.2566249	chr6	 34360244	 34362522	+	NA	NA	NA	NA	NUDT3	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60chr6:34350244-34360457"	NA	inner
CUST_35040_PI429285431	5.0944967	P	5.404012	P	0.806912810924193	0	lncRNA	36451-1_{1..1606}	n341985|BC014174|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4466|NULL|-1.1773100|-0.2930748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341985|BC014174|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4466|NULL|-1.1773100|-0.2930748	chr12	 94182680	 94184285	+	NA	NA	NA	NA	CRADD	NA	chr12:94172680-94194265	inner
CUST_49546_PI429285431	9.114945	P	9.916859	P	0.573587703034129	0	lncRNA	53338-2_{3001..3516}	hg19_lincRNAsTranscripts_TCONS_l2_00024808 range=chr6:69339822-69344886 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024808 range=chr6:69339822-69344886 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 69342822	 69343337	-	NA	NA	NA	NA	BAI3	NA	chr6:69345632-69354886	inter
CUST_20150_PI429285431	4.7958007	P	5.0665746	P	0.828874796046118	0	lncRNA	21795-1_{1..756}	lnc-DHRS7B-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHRS7B-5:4	chr17	 20802293	 20803048	+	lnc-DHRS7B-5	lnc-DHRS7B-5:4	ENSG00000233098.3	RP11-344E13.3	CCDC144NL	NA	chr17:20792293-20799453	inter
LNCA_19_P00321682	8.012876	P	8.269964	P	0.836775200390055	0	lncRNA	XR_132545	XR_132545	XR_132545	NA	NA	LOC286149	uncharacterized LOC286149	NA	THC2732853	NA	"PREDICTED: Homo sapiens hypothetical LOC286149 (LOC286149), miscRNA [XR_132545]"	chr8:96085236-96085177	hs|8q22.1	Agilent_HUMAN_G3V2	XR_132545	XR_132545	chr8	 96085177	 96085236	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11535_PI429285431	1.6605281	A	0.9057875	A	1.68732817936348	0	lncRNA	13107-1_{1..3000}	lnc-OIP5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OIP5-1:2	chr15	 41597681	 41600680	-	lnc-OIP5-1	lnc-OIP5-1:2	XLOC_011448	linc-EXD1	OIP5	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00chr15:41601466-41608727"	NA	inter
CUST_6777_PI429285431	6.1618824	P	6.798336	P	0.643292333304331	0	lncRNA	6724-1_{1..372}	"transcript_id ""ENST00000602620.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602620.1"" | genecode_v17"	chr21	 17792775	 17793146	+	ENSG00000215386.6	ENST00000602620.1	LINC00478	LINC00478-017	NA	NA	NA	inter
CUST_28946_PI429285431	1.0926875	A	1.3105304	A	0.859850113166522	0	lncRNA	30666-1_{1..1997}	n326375|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000034662|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000034662|-0.2975270|-0.2508546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326375|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000034662|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000034662|-0.2975270|-0.2508546	chr1	151169139	151171135	-	NA	NA	NA	NA	PIP5K1A	"hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SSH1:range=chr12:109185876-1092211815'pad=0,hg19_refFlat_SSH1:range=chr12:109185876-1092211815'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SSH1:range=chr12:109185876-1092512725'pad=0,hg19_refFlat_SSH1:range=chr12:109185876-1092512725'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90chr1:151171021-151198310"	NA	inner
CUST_33100_PI429285431	1.8630832	A	1.6377933	A	1.16901213019576	0	lncRNA	34702-1_{1..3000}	n339790|AL390128|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2237|NULL|1.5004800|-0.1660220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339790|AL390128|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2237|NULL|1.5004800|-0.1660220	chr4	  1369821	  1372820	+	NA	NA	NA	NA	KIAA1530	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50chr4:1359821-1381837"	NA	inner
CUST_45584_PI429285431	3.1038315	P	3.5161707	P	0.751404051505566	0	lncRNA	49976-2_{3001..4704}	"gi|392976404|ref|NR_072978.1| Homo sapiens BMS1 pseudogene 2 (BMS1P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392976404|ref|NR_072978.1| Homo sapiens BMS1 pseudogene 2 (BMS1P2), non-coding RNA"	Chr10	 47228563	 47230266	-	414216	NR_072978.1	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60"	NA	inter
CUST_26244_PI429285431	0.90452707	A	1.2813982	A	0.770105961554303	0	lncRNA	27751-1_{1..2339}	lnc-AC110373.1-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC110373.1-6:2	chr4	121004440	121006778	+	lnc-AC110373.1-6	lnc-AC110373.1-6:2	ENSG00000250938.1	RP11-679C8.2	NA	NA	NA	inter
CUST_47364_PI429285431	1.0266347	A	1.3393623	A	0.805118140277112	0	lncRNA	51414-1_{1..1045}	"gi|392306980|ref|NR_027072.2| Homo sapiens long intergenic non-protein coding RNA 189 (LINC00189), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|392306980|ref|NR_027072.2| Homo sapiens long intergenic non-protein coding RNA 189 (LINC00189), non-coding RNA"	Chr21	 30565815	 30566859	+	193629	NR_027072.2	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20"	NA	inter
CUST_162_PI429285431	0.9109744	A	0.90613765	A	1.0033582058063	0	lncRNA	153-1_{1..282}	"transcript_id ""ENST00000449215.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449215.1"" | genecode_v17"	chr1	 14548386	 14548667	-	ENSG00000231606.1	ENST00000449215.1	RP11-344F13.1	RP11-344F13.1-001	NA	NA	NA	inter
CUST_50059_PI429285431	0.9220078	A	0.9210481	A	1.00066543465265	0	lncRNA	53793-2_{3001..5754}	hg19_lincRNAsTranscripts_TCONS_l2_00027780 range=chr8:58121382-58153517 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027780 range=chr8:58121382-58153517 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 58124382	 58127135	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16886_PI429285431	2.8006356	A	3.8903837	P	0.469843403877361	0	lncRNA	18595-1_{1..673}	lnc-C19orf26-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C19orf26-1:1	chr19	  1248012	  1248684	-	lnc-C19orf26-1	lnc-C19orf26-1:1	XLOC_013195	linc-C19orf26-1	MIDN	NA	chr19:1248552-1258229	inter
CUST_38126_PI429285431	1.2441199	A	0.92241377	A	1.24980769687389	0	lncRNA	39199-1_{1..1011}	n381240|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001enx.2||1.6610600|-0.2725403	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381240|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001enx.2||1.6610600|-0.2725403	chr1	145514195	145515205	-	NA	NA	NA	NA	ITGA10	NA	chr1:145524990-145525899	inter
CUST_11604_PI429285431	5.996577	P	6.0434217	P	0.968051227892617	0	lncRNA	13183-1_{1..299}	lnc-SGCG-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SGCG-5:1	chr13	 23507259	 23507557	+	lnc-SGCG-5	lnc-SGCG-5:1	XLOC_010305	linc-SGCG-4	NA	NA	NA	inter
CUST_1850_PI429285431	1.2602129	A	1.193228	A	1.04752516309681	0	lncRNA	1840-1_{1..597}	"transcript_id ""ENST00000420701.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420701.1"" | genecode_v17"	chr4	118281781	118282377	+	ENSG00000228358.1	ENST00000420701.1	AC113617.1	AC113617.1-003	NA	NA	NA	inter
CUST_24133_PI429285431	1.6721777	A	0.9665488	A	1.63085543280222	0	lncRNA	25685-1_{1..797}	lnc-SAP30-5:28	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:28	chr4	174457999	174458795	+	lnc-SAP30-5	lnc-SAP30-5:28	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174447999-174451378	inter
CUST_41264_PI429285431	0.91331744	A	0.9194391	A	0.995765778332453	0	lncRNA	42229-1_{1..80}	ENST00000362222 ncrna:miRNA chromosome:GRCh37:14:101532249:101532328:1 gene:ENSG00000199092 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362222 ncrna:miRNA chromosome:GRCh37:14:101532249:101532328:1 gene:ENSG00000199092 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101532249	101532328	+	ENSG00000199092	ENST00000362222	NA	NA	NA	NA	NA	inter
CUST_14380_PI429285431	4.900929	P	5.2331734	P	0.794299830199505	0	lncRNA	16041-1_{1..477}	lnc-C17orf101-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C17orf101-1:1	chr17	 80341395	 80341871	-	lnc-C17orf101-1	lnc-C17orf101-1:1	XLOC_012594	linc-SECTM1-3	C17orf101	NA	chr17:80347086-80351524	inter
CUST_35787_PI429285431	1.4933515	A	1.3126276	A	1.13345247422476	0	lncRNA	37199-1_{1..3000}	n344469|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_17|NULL|-1.4842400|-0.3041799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344469|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_17|NULL|-1.4842400|-0.3041799	chr1	159930964	159933963	+	NA	NA	NA	NA	PIGM	NA	chr1:159997462-160001783	inter
CUST_8422_PI429285431	0.93062735	A	0.9263427	A	1.00297430756872	0	lncRNA	9994-1_{1..439}	lnc-PLEKHA3-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLEKHA3-1:6	chr2	179403425	179403863	+	lnc-PLEKHA3-1	lnc-PLEKHA3-1:6	ENSG00000237298	AC009948.3	TTN	"hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50chr2:179393425-179413631"	NA	inter
CUST_41637_PI429285431	0.9054929	A	1.1715325	A	0.831599271802281	0	lncRNA	43032-1_{1..79}	ENST00000578855 ncrna:miRNA chromosome:GRCh37:16:28969904:28969982:1 gene:ENSG00000266868 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578855 ncrna:miRNA chromosome:GRCh37:16:28969904:28969982:1 gene:ENSG00000266868 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 28969904	 28969982	+	ENSG00000266868	ENST00000578855	NA	NA	NFATC2IP	NA	chr16:28962318-28977786	inner
CUST_31513_PI429285431	4.8832874	P	2.5701716	A	4.96955199939434	0	lncRNA	33274-1_{1..1284}	n338001|AL050227|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|388|NULL|-1.2459400|-0.4105105	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338001|AL050227|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|388|NULL|-1.2459400|-0.4105105	chr1	 71472541	 71473824	-	NA	NA	NA	NA	PTGER3	NA	chr1:71462541-71483814	inner
CUST_29513_PI429285431	3.258896	P	1.1831154	A	4.21572453181583	0	lncRNA	31271-1_{1..316}	n332948|AF088077|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067625|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067625|-1.5148700|-0.3352615	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332948|AF088077|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067625|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067625|-1.5148700|-0.3352615	chr15	 77401210	 77401525	-	NA	NA	NA	NA	PEAK1	NA	chr15:77400498-77411526	inner
CUST_44525_PI429285431	3.3560452	P	3.905095	P	0.683470133043001	0	lncRNA	49119-1_{1..2490}	"gi|410170487|ref|XR_108575.4| PREDICTED: Homo sapiens uncharacterized LOC643977 (FLJ32255), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170487|ref|XR_108575.4| PREDICTED: Homo sapiens uncharacterized LOC643977 (FLJ32255), misc_RNA"	NA	NA	NA	NA	NA	XR_108575.4	NA	NA	NA	NA	NA	Unknown
CUST_11139_PI429285431	0.9133042	A	1.2233082	A	0.806639522739382	0	lncRNA	12696-1_{1..482}	lnc-PPP1R3D-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PPP1R3D-3:1	chr20	 59047976	 59048457	-	lnc-PPP1R3D-3	lnc-PPP1R3D-3:1	XLOC_013827	linc-PPP1R3D-3	NA	NA	NA	inter
CUST_13905_PI429285431	4.4984303	P	4.8717246	P	0.772017630668917	0	lncRNA	15552-1_{1..462}	lnc-SERPINB3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERPINB3-3:1	chr18	 62659870	 62660331	-	lnc-SERPINB3-3	lnc-SERPINB3-3:1	XLOC_012866	linc-SERPINB3-4	NA	NA	NA	inter
CUST_26369_PI429285431	5.7912393	P	6.7937927	P	0.499115841653356	0	lncRNA	27876-1_{1..324}	lnc-CTD-2517M22.14.1-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2517M22.14.1-2:11	chr8	145737708	145738031	-	lnc-CTD-2517M22.14.1-2	lnc-CTD-2517M22.14.1-2:11	ENSG00000160957.7	RECQL4	MFSD3	NA	chr8:145734552-145736589	inner
CUST_27759_PI429285431	2.0461175	A	1.5888586	A	1.37293078954915	0	lncRNA	29340-1_{1..425}	n324975|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079611|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079611|0.3379570|-0.1437977	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324975|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079611|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079611|0.3379570|-0.1437977	chr20	 46012949	 46013373	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20"	NA	inter
CUST_47242_PI429285431	1.6927863	A	2.0934124	A	0.75752945969094	0	lncRNA	51316-1_{1..706}	"gi|397139937|ref|XR_109654.2| PREDICTED: Homo sapiens uncharacterized LOC100505683 (LOC100505683), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139937|ref|XR_109654.2| PREDICTED: Homo sapiens uncharacterized LOC100505683 (LOC100505683), misc_RNA"	Chr20	 23337231	 23337936	-	100505683	XR_109654.3	NA	NA	NA	NA	NA	inter
CUST_6284_PI429285431	7.3849998	P	7.3548293	P	1.02113279767846	0	lncRNA	6208-1_{1..393}	"transcript_id ""ENST00000583511.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583511.1"" | genecode_v17"	chr18	 76737095	 76737487	-	ENSG00000263146.2	ENST00000583511.1	RP11-849I19.1	RP11-849I19.1-004	SALL3	NA	chr18:76740275-76748843	inter
CUST_8483_PI429285431	5.1392198	P	4.992754	P	1.10685466331067	0	lncRNA	10047-1_{1..2054}	lnc-KIAA1239-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1239-1:1	chr4	 37614325	 37616378	+	lnc-KIAA1239-1	lnc-KIAA1239-1:1	ENSG00000245325	ENST00000499638	RELL1	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90chr4:37604325-37624793"	NA	inner
CUST_8349_PI429285431	3.8443036	P	4.115506	P	0.828628645543285	0	lncRNA	9928-2_{3001..5685}	lnc-VN1R1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VN1R1-1:1	chr19	 57940073	 57942757	-	lnc-VN1R1-1	lnc-VN1R1-1:1	ENSG00000246220	ENST00000501492	ZNF749	"hg19_refFlat_ZNF17:range=chr19:57922760-579328495'pad=0,hg19_refFlat_ZNF17:range=chr19:57922760-579328495'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr19:57946693-57949798"	NA	inter
CUST_2533_PI429285431	2.0272672	A	2.191718	A	0.892268120220985	0	lncRNA	2521-1_{1..348}	"transcript_id ""ENST00000424283.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424283.1"" | genecode_v17"	chr6	 43690523	 43690870	-	ENSG00000236961.1	ENST00000424283.1	RP1-261G23.5	RP1-261G23.5-001	NA	NA	NA	inter
CUST_2055_PI429285431	0.92228186	A	0.911047	A	1.00781781228533	0	lncRNA	2047-1_{1..556}	"transcript_id ""ENST00000509057.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509057.1"" | genecode_v17"	chr5	  4974803	  4975358	-	ENSG00000250481.1	ENST00000509057.1	CTD-2247C11.1	CTD-2247C11.1-001	NA	NA	NA	inter
CUST_40922_PI429285431	4.6804037	P	4.8983736	P	0.859774424157442	0	lncRNA	41608-1_{1..3000}	n410790|NR_038244|lncRNA|Homosapiens||RefGeneNoncode|NR_038244||-1.2138100|-0.4061654	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410790|NR_038244|lncRNA|Homosapiens||RefGeneNoncode|NR_038244||-1.2138100|-0.4061654	chr6	146136011	146139010	+	NA	NA	NA	NA	SHPRH	NA	chr6:146205943-146217721	inner
CUST_18191_PI429285431	1.9006715	A	2.121948	A	0.85780611167537	0	lncRNA	19926-2_{3001..3307}	lnc-TCL1B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TCL1B-1:3	chr14	 96141308	 96141614	+	lnc-TCL1B-1	lnc-TCL1B-1:3	ENSG00000187621	TCL6	NA	NA	NA	inter
LNCA_21_P0006551	2.7468612	A	2.3604348	A	1.30715153584447	0	lncRNA	AK098726	NA	AK098726	NA	Hs.436787	XLOC_008244	NA	NA	THC2595727	NA	"BROAD Institute lincRNA (XLOC_008244), lincRNA [TCONS_00017379]"	chrX:135991719-135991660	hs|Xq26.3	Agilent_HUMAN_G3V2	AK098726	AK098726	chrX	135991660	135991719	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_167_PI429201921	2.0553946	A	3.3255064	P	0.414627640568039	0	lncRNA	142-1_{1..3000}	TC19002350.hg.1	 TCONS_l2_00012881-XLOC_l2_006930 // Broad TUCP // linc-PALM3 chr19:-:14192336-14196579 // chr19 // 100 // 100 // 0 // --- // 0///TCONS_l2_00012880-XLOC_l2_006930 // Broad TUCP // linc-PALM3 chr19:-:14192336-14196579 // chr19 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr19:-:14192336-14196579	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00012880-XLOC_l2_006930	linc-PALM3	chr19	 14192336	 14196579	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49105_PI429285431	1.2606083	A	1.243556	A	1.01188988298683	0	lncRNA	52929-1_{1..370}	hg19_lincRNAsTranscripts_TCONS_l2_00021110 range=chr4:38606227-38607683 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021110 range=chr4:38606227-38607683 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 38606227	 38606596	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9447_PI429285431	0.92968476	A	0.935477	A	0.995993174009513	0	lncRNA	10953-1_{1..3000}	lnc-C15orf41-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf41-6:1	chr15	 36471615	 36474614	+	lnc-C15orf41-6	lnc-C15orf41-6:1	XLOC_011210	linc-C15orf41-3	NA	NA	NA	inter
CUST_27327_PI429285431	0.9159541	A	0.9118279	A	1.00286415778117	0	lncRNA	28887-1_{1..662}	n324482|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041155|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041155|-1.2474000|-0.5172500	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324482|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041155|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041155|-1.2474000|-0.5172500	chr6	 72110767	 72111428	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013641	4.1488657	P	4.7015023	P	0.681773013604283	0	lncRNA	TCONS_l2_00029313	NA	NA	NA	NA	XLOC_l2_015201	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015201), lincRNA [TCONS_l2_00029313]"	chr9:66536370-66525093	hs|9q13	Agilent_HUMAN_G3V2	TCONS_l2_00029313	TCONS_l2_00029313	chr9	 66525093	 66536370	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49345_PI429285431	0.9803839	A	0.9278828	A	1.0370612472297	0	lncRNA	53158-1_{1..650}	hg19_lincRNAsTranscripts_TCONS_l2_00022963 range=chr5:74434772-74442424 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022963 range=chr5:74434772-74442424 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 74434772	 74435421	-	NA	NA	NA	NA	ANKRD31	NA	chr5:74424772-74452424	inner
CUST_39531_PI429285431	6.2258244	P	6.57134	P	0.787026653453924	0	lncRNA	40477-1_{1..1806}	n387392|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011djk.1||1.3193700|-0.2169533	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387392|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011djk.1||1.3193700|-0.2169533	chr6	 21668877	 21670682	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27784_PI429285431	0.9229301	A	0.9160317	A	1.0047930566335	0	lncRNA	29369-1_{1..626}	n325009|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078485|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078485|-1.2350100|-0.4023332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325009|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078485|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078485|-1.2350100|-0.4023332	chr20	 26119624	 26120249	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45546_PI429285431	2.5893898	A	0.90130556	A	3.2222853102564	0	lncRNA	49947-1_{1..573}	"gi|410170592|ref|XR_171057.1| PREDICTED: Homo sapiens golgin A6 family, member A pseudogene (LOC729668), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170592|ref|XR_171057.1| PREDICTED: Homo sapiens golgin A6 family, member A pseudogene (LOC729668), misc_RNA"	Chr10	 30653087	 30653659	-	729668	XR_171057.2	NA	NA	NA	NA	NA	inter
CUST_48759_PI429285431	0.92130864	A	0.9120751	A	1.00642072727661	0	lncRNA	52596-1_{1..1162}	hg19_lincRNAsTranscripts_TCONS_l2_00014953 range=chr2:155548248-155553147 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014953 range=chr2:155548248-155553147 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	155548248	155549409	-	NA	NA	NA	NA	KCNJ3	NA	chr2:155555093-155563147	inter
CUST_9641_PI429285431	1.8696082	A	1.0984838	A	1.70659934569076	0	lncRNA	11159-1_{1..556}	lnc-EMX2-5:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EMX2-5:8	chr10	120026930	120027485	+	lnc-EMX2-5	lnc-EMX2-5:8	XLOC_008636	linc-NANOS1-3	NA	NA	NA	inter
CUST_46497_PI429285431	2.14032	A	2.408207	A	0.830535073727386	0	lncRNA	50691-1_{1..2835}	"gi|224586810|ref|NR_027262.1| Homo sapiens HEXA antisense RNA 1 (HEXA-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224586810|ref|NR_027262.1| Homo sapiens HEXA antisense RNA 1 (HEXA-AS1), non-coding RNA"	Chr15	 72668454	 72671288	+	80072	NR_027262.1	NA	NA	NA	"hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90"	NA	inter
CUST_2536_PI429285431	0.90833807	A	0.9027459	A	1.00388371903579	0	lncRNA	2524-1_{1..473}	"transcript_id ""ENST00000436113.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436113.1"" | genecode_v17"	chr6	 44492996	 44493468	+	ENSG00000237530.1	ENST00000436113.1	RP3-449H6.1	RP3-449H6.1-001	NA	NA	NA	inter
CUST_14140_PI429285431	1.6822641	A	1.8936824	A	0.863687730479062	0	lncRNA	15791-1_{1..644}	lnc-ABCA13-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABCA13-2:1	chr7	 48884686	 48885329	+	lnc-ABCA13-2	lnc-ABCA13-2:1	XLOC_006092	linc-VWC2-3	NA	NA	NA	inter
CUST_16017_PI429285431	0.92185104	A	1.6784487	A	0.591890554794535	0	lncRNA	17712-1_{1..568}	lnc-FAM43A-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM43A-7:1	chr3	194575015	194575582	+	lnc-FAM43A-7	lnc-FAM43A-7:1	XLOC_002988	linc-MUC20-9	NA	NA	NA	inter
CUST_36332_PI429285431	1.4290096	A	0.9090091	A	1.43395574498693	0	lncRNA	37563-1_{1..860}	n344859|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_408|NULL|-1.3392100|-0.2866939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344859|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_408|NULL|-1.3392100|-0.2866939	chr5	150310018	150310877	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZFP28:range=chr19:57050388-570667615'pad=0,hg19_refFlat_ZFP28:range=chr19:57050388-570667615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_ZNF300:range=chr5:150274986-1502829115'pad=0,hg19_refFlat_ZNF300:range=chr5:150274986-1502829115'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF300:range=chr5:150274986-1502827175'pad=0,hg19_refFlat_ZNF300:range=chr5:150274986-1502827175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF594:range=chr17:5085128-50875515'pad=0,hg19_refFlat_ZNF594:range=chr17:5085128-50875515'pad=0 3'pad=0 strand=- repeatMasking=none,-55.20;hg19_refFlat_ZNF300:range=chr5:150274986-1502780235'pad=0,hg19_refFlat_ZNF300:range=chr5:150274986-1502780235'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40"	NA	inter
CUST_16588_PI429285431	6.365969	P	6.278489	P	1.06251263696028	0	lncRNA	18289-1_{1..288}	lnc-PEAK1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PEAK1.1-1:2	chr15	 77712348	 77712635	-	lnc-PEAK1.1-1	lnc-PEAK1.1-1:2	XLOC_011535	linc-PEAK1	HMG20A	NA	chr15:77702348-77722543	inner
CUST_44099_PI429285431	0.92061526	A	1.3186444	A	0.758894297950814	0	lncRNA	48764-1_{1..849}	"gi|289629233|ref|NR_033346.1| Homo sapiens BOK antisense RNA 1 (BOK-AS1), antisense RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|289629233|ref|NR_033346.1| Homo sapiens BOK antisense RNA 1 (BOK-AS1), antisense RNA"	NA	NA	NA	NA	NA	NR_033346.1	NA	NA	NA	NA	NA	Unknown
CUST_2418_PI429285431	0.9187649	A	0.8962631	A	1.01571932820755	0	lncRNA	2410-1_{1..389}	"transcript_id ""ENST00000522426.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522426.1"" | genecode_v17"	chr5	163636637	163637025	+	ENSG00000253538.1	ENST00000522426.1	CTB-32P11.1	CTB-32P11.1-001	NA	NA	NA	inter
CUST_40918_PI429285431	1.1883004	A	1.1165123	A	1.05101852636934	0	lncRNA	41604-1_{1..1525}	n410770|NR_038224|lncRNA|Homosapiens||RefGeneNoncode|NR_038224||1.7158300|-0.2315381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n410770|NR_038224|lncRNA|Homosapiens||RefGeneNoncode|NR_038224||1.7158300|-0.2315381	chr10	 77056140	 77057664	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37434_PI429285431	3.2040417	P	3.5070467	P	0.810562310685539	0	lncRNA	38537-1_{1..3000}	n345886|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1435|NULL|-1.6761900|-0.2983266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n345886|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1435|NULL|-1.6761900|-0.2983266	chr12	105946681	105949680	+	NA	NA	NA	NA	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_16426_PI429285431	2.2993953	A	2.4966385	A	0.87221566102264	0	lncRNA	18125-1_{1..280}	lnc-ABT1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABT1-3:3	chr6	 26677841	 26678120	+	lnc-ABT1-3	lnc-ABT1-3:3	XLOC_005214	linc-HIST1H2AG-4	NA	NA	NA	inter
CUST_37805_PI429285431	5.8941345	P	7.2993393	P	0.377564544828866	0	lncRNA	38898-1_{1..235}	n346317|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1867|NULL|-1.3669900|-0.1870630	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346317|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1867|NULL|-1.3669900|-0.1870630	chr2	 87572252	 87572486	-	NA	NA	NA	NA	LOC100652743	NA	chr2:87565634-87566264	inter
CUST_48517_PI429285431	1.9109728	A	1.9404002	A	0.979809102811921	0	lncRNA	52370-1_{1..561}	hg19_lincRNAsTranscripts_TCONS_l2_00014824 range=chr2:114293396-114300503 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014824 range=chr2:114293396-114300503 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	114293396	114293956	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
LNCA_21_P0006414	0.98545814	A	0.9279484	A	1.04066789539356	0	lncRNA	XR_110930	XR_110930	XR_110930	NA	NA	LOC100506630	uncharacterized LOC100506630	ENST00000421585	THC2626078	NA	"PREDICTED: Homo sapiens hypothetical LOC100506630 (LOC100506630), miscRNA [XR_110930]"	chrX:15639477-15639536	hs|Xp22.2	Agilent_HUMAN_G3V2	XR_110930	XR_110930	chrX	 15639477	 15639536	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4808_PI429285431	0.9296224	A	0.92575365	A	1.00268521189544	0	lncRNA	4752-1_{1..2460}	"transcript_id ""ENST00000556913.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556913.1"" | genecode_v17"	chr14	 50408654	 50411113	-	ENSG00000258946.1	ENST00000556913.1	RP11-58E21.4	RP11-58E21.4-003	NA	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90"	NA	inter
LNCA_21_P0002967	0.9880333	A	1.0584507	A	0.952362421034645	0	lncRNA	ENST00000481004	NA	NA	NA	NA	XLOC_002688	NA	ENST00000481004	THC2633322	NA	"BROAD Institute lincRNA (XLOC_002688), lincRNA [TCONS_00005534]"	chr3:65179056-65179115	hs|3p14.1	Agilent_HUMAN_G3V2	ENST00000481004	ENST00000481004	chr3	 65179056	 65179115	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41793_PI429285431	1.0606157	A	0.9134301	A	1.10740704115098	0	lncRNA	43374-1_{1..83}	ENST00000408220 ncrna:miRNA chromosome:GRCh37:19:20579240:20579322:-1 gene:ENSG00000221147 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408220 ncrna:miRNA chromosome:GRCh37:19:20579240:20579322:-1 gene:ENSG00000221147 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 20579240	 20579322	-	ENSG00000221147	ENST00000408220	NA	NA	NA	NA	NA	inter
CUST_18148_PI429285431	1.4109967	A	2.0392432	A	0.646962277318034	0	lncRNA	19883-1_{1..902}	lnc-AL139008.2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AL139008.2-1:1	chr9	 33605009	 33605910	+	lnc-AL139008.2-1	lnc-AL139008.2-1:1	ENSG00000226562	RP11-255A11.21	NA	NA	NA	inter
CUST_20492_PI429285431	2.9753592	A	2.915802	A	1.04214585053849	0	lncRNA	22134-1_{1..358}	lnc-RSPRY1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RSPRY1-1:1	chr16	 57282155	 57282512	+	lnc-RSPRY1-1	lnc-RSPRY1-1:1	ENSG00000260038.1	RP11-407G23.4	PLLP	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-60.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20chr16:57290009-57292404"	NA	inner
CUST_10652_PI429285431	0.9201488	A	1.0495228	A	0.91422805699699	0	lncRNA	12184-1_{1..1304}	lnc-IRF2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-IRF2-4:1	chr4	185458656	185459959	-	lnc-IRF2-4	lnc-IRF2-4:1	XLOC_004207	linc-IRF2-2	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90"	NA	inter
CUST_4336_PI429285431	0.98930657	A	0.9260031	A	1.04485552445648	0	lncRNA	4291-1_{1..638}	"transcript_id ""ENST00000548705.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548705.1"" | genecode_v17"	chr12	 81156933	 81157570	+	ENSG00000257741.1	ENST00000548705.1	RP11-540D4.3	RP11-540D4.3-002	NA	NA	NA	inter
CUST_8956_PI429285431	1.4918026	A	1.8814731	A	0.763303917078893	0	lncRNA	10490-1_{1..867}	lnc-NXPH2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NXPH2-3:2	chr2	139258889	139259755	-	lnc-NXPH2-3	lnc-NXPH2-3:2	ENSG00000228043	AC097721.2	SPOPL	NA	chr2:139259350-139269244	inter
CUST_24392_PI429285431	8.469732	P	8.950308	P	0.716691425837706	0	lncRNA	25945-1_{1..1871}	lnc-PODN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PODN-1:1	chr1	 53584068	 53585938	+	lnc-PODN-1	lnc-PODN-1:1	ENSG00000235563.1	RP11-334A14.8	SLC1A7	"hg19_refFlat_SLC1A7:range=chr1:53553681-536081215'pad=0,hg19_refFlat_SLC1A7:range=chr1:53553681-536081215'pad=0 3'pad=0 strand=- repeatMasking=none,-97.60chr1:53574068-53594281"	NA	inner
CUST_35048_PI429285431	2.0957797	A	2.9118264	A	0.567996246072424	0	lncRNA	36458-1_{1..1143}	n341995|BC037980|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4476|NULL|-1.0406300|-0.2558143	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341995|BC037980|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4476|NULL|-1.0406300|-0.2558143	chr12	 99422684	 99423826	-	NA	NA	NA	NA	ANKS1B	NA	chr12:99412684-99433795	inner
CUST_42427_PI429285431	0.98060465	A	1.0077217	A	0.981379438485657	0	lncRNA	45147-1_{1..127}	ENST00000408318 ncrna:snoRNA chromosome:GRCh37:4:120490854:120490980:1 gene:ENSG00000221245 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408318 ncrna:snoRNA chromosome:GRCh37:4:120490854:120490980:1 gene:ENSG00000221245 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	120490854	120490980	+	ENSG00000221245	ENST00000408318	NA	NA	PDE5A	NA	chr4:120480854-120500980	inner
CUST_27899_PI429285431	3.707491	P	3.5556905	P	1.11095509198243	0	lncRNA	29494-1_{1..322}	n325137|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331805|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331805|-1.2118500|-0.2754821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325137|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331805|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331805|-1.2118500|-0.2754821	chr2	132759837	132760158	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007432	1.4822904	A	2.2835853	A	0.573833898065721	0	lncRNA	TCONS_00019871	NA	NA	NA	NA	XLOC_009089	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009089), lincRNA [TCONS_00019871]"	chr11:22531878-22531937	hs|11p14.3	Agilent_HUMAN_G3V2	TCONS_00019871	TCONS_00019871	chr11	 22531878	 22531937	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16552_PI429285431	0.9050161	A	0.89873713	A	1.00436173514896	0	lncRNA	18253-1_{1..794}	lnc-METTL4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-METTL4-1:1	chr18	  2510278	  2511071	-	lnc-METTL4-1	lnc-METTL4-1:1	XLOC_012743	linc-YES1-1	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_10123_PI429285431	0.9008364	A	0.8964	A	1.00307981105476	0	lncRNA	11648-1_{1..393}	lnc-EPHA6-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPHA6-1:5	chr3	 96336818	 96337210	+	lnc-EPHA6-1	lnc-EPHA6-1:5	XLOC_002730	linc-EPHA6-1	NA	NA	NA	inter
CUST_51474_PI429285431	0.9257221	A	1.1261873	A	0.870269897719375	0	lncRNA	55049-1_{1..279}	hg19_lincRNAsTranscripts_TCONS_l2_00010131 range=chr16:33647308-33661699 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010131 range=chr16:33647308-33661699 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 33647308	 33647586	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17457_PI429285431	1.0215907	A	1.1227869	A	0.932259694713769	0	lncRNA	19182-1_{1..366}	lnc-SEPT9-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEPT9-4:1	chr17	 75663542	 75663907	+	lnc-SEPT9-4	lnc-SEPT9-4:1	XLOC_012318	linc-TNRC6C-2	NA	NA	NA	inter
CUST_36718_PI429285431	0.9100747	A	0.9040547	A	1.00418146405349	0	lncRNA	37896-2_{3001..3566}	n345203|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_752|NULL|-1.3237000|-0.3622143	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345203|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_752|NULL|-1.3237000|-0.3622143	chr13	 74808584	 74809149	+	NA	NA	NA	NA	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_33071_PI429285431	10.091124	P	11.624025	P	0.345581765182099	0	lncRNA	34678-2_{3001..3097}	n339758|BC035147|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2205|NULL|2.2101300|-0.1877609	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339758|BC035147|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2205|NULL|2.2101300|-0.1877609	chr20	 62495567	 62495663	-	NA	NA	NA	NA	TPD52L2	"hg19_refFlat_ABHD16B:range=chr20:62492894-624943035'pad=0,hg19_refFlat_ABHD16B:range=chr20:62492894-624943035'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.60chr20:62496590-62505646"	NA	inner
LNCA_21_P0006937	1.6714362	A	1.5873687	A	1.06000237702908	0	lncRNA	TCONS_00018388	NA	NA	NA	NA	XLOC_008668	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008668), lincRNA [TCONS_00018388]"	chr10:132032751-132032810	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_00018388	TCONS_00018388	chr10	132032751	132032810	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19316_PI429285431	0.97931427	A	0.9946924	A	0.989397301649415	0	lncRNA	20982-1_{1..407}	lnc-GTPBP4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-GTPBP4-3:1	chr10	   988420	   988826	+	lnc-GTPBP4-3	lnc-GTPBP4-3:1	ENSG00000229869.1	RP11-363N22.2	NA	NA	NA	inter
CUST_31253_PI429285431	5.617544	P	5.790782	P	0.886849990302027	0	lncRNA	33044-1_{1..1613}	n337708|BC037537|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|90|NULL|-0.0583359|-0.2460399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337708|BC037537|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|90|NULL|-0.0583359|-0.2460399	chr15	 40666599	 40668211	+	NA	NA	NA	NA	C15orf23	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60chr15:40674922-40678192"	NA	inter
CUST_44509_PI429285431	8.875515	P	7.036848	P	3.57679392338314	0	lncRNA	49108-1_{1..2996}	"gi|386642863|ref|NR_047676.1| Homo sapiens threonyl-tRNA synthetase (TARS), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386642863|ref|NR_047676.1| Homo sapiens threonyl-tRNA synthetase (TARS), transcript variant 4, non-coding RNA"	Chr5	 33440882	 33443877	+	6897	NR_047676.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014447	1.4444568	A	0.917525	A	1.44086163389793	0	lncRNA	XR_109841	XR_109841	XR_109841	NA	NA	LOC100505505	uncharacterized LOC100505505	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505505 (LOC100505505), miscRNA [XR_109841]"	chr4:75858579-75858520	hs|4q13.3	Agilent_HUMAN_G3V2	XR_109841	XR_109841	chr4	 75858520	 75858579	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2790_PI429285431	0.91476786	A	1.2630968	A	0.785493400742182	0	lncRNA	2774-1_{1..567}	"transcript_id ""ENST00000412413.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412413.1"" | genecode_v17"	chr7	 27401462	 27402028	+	ENSG00000224322.1	ENST00000412413.1	AC004009.3	AC004009.3-001	NA	NA	NA	inter
CUST_29758_PI429285431	0.90467435	A	0.8951025	A	1.00665675922447	0	lncRNA	31520-1_{1..577}	n333443|BC017925|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000089468|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000089468|2.7551100|-0.2623250	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333443|BC017925|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000089468|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000089468|2.7551100|-0.2623250	chr3	 69169056	 69169632	-	NA	NA	NA	NA	LMOD3	NA	chr3:69159056-69171746	inner
CUST_21944_PI429285431	0.9113315	A	1.3265074	A	0.749928054398758	0	lncRNA	23552-1_{1..811}	lnc-LYRM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LYRM2-1:1	chr6	 90276609	 90277419	-	lnc-LYRM2-1	lnc-LYRM2-1:1	ENSG00000237027.1	RP11-16C18.3	ANKRD6	"hg19_refFlat_ANKRD6:range=chr6:90276696-903407235'pad=0,hg19_refFlat_ANKRD6:range=chr6:90276696-903407235'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30chr6:90266609-90286763"	NA	inner
CUST_11684_PI429285431	1.8361218	A	2.7772775	A	0.520815503491011	0	lncRNA	13262-1_{1..470}	lnc-SPATA5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPATA5-2:1	chr4	124249334	124249803	+	lnc-SPATA5-2	lnc-SPATA5-2:1	XLOC_003679	linc-SPRY1-1	SPATA5	NA	chr4:124239334-124240605	inter
CUST_29236_PI429285431	2.2984693	A	1.6197287	A	1.60074177825663	0	lncRNA	30986-2_{3001..4860}	n326766|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007035|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007035|3.5330900|-0.1048308	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326766|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007035|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007035|3.5330900|-0.1048308	chr1	   134336	   136195	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38790_PI429285431	5.6455393	P	3.8968334	P	3.36056987152208	0	lncRNA	39785-1_{1..1741}	n384478|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hrl.1||0.5576720|-0.2986633	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384478|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hrl.1||0.5576720|-0.2986633	chr4	 89178767	 89180507	-	NA	NA	NA	NA	PPM1K	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr4:89181531-89190508"	NA	inner
CUST_31832_PI429285431	0.9195222	A	0.9059932	A	1.00942169555177	0	lncRNA	33567-1_{1..622}	n338378|AF075054|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|773|NULL|-1.0501300|-0.3718563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338378|AF075054|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|773|NULL|-1.0501300|-0.3718563	chr1	176900639	176901260	-	NA	NA	NA	NA	ASTN1	NA	chr1:176890639-176911214	inner
CUST_33066_PI429285431	1.0598608	A	0.9175388	A	1.10368004664738	0	lncRNA	34675-1_{1..3000}	n339754|AK125376|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2201|NULL|1.8387500|-0.1655108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339754|AK125376|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2201|NULL|1.8387500|-0.1655108	chr20	 62002104	 62005103	-	NA	NA	NA	NA	CHRNA4	NA	chr20:61992104-61992695	inter
CUST_35690_PI429285431	0.9163565	A	0.89287996	A	1.01640581895385	0	lncRNA	37109-1_{1..585}	n342850|AF426412|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5353|NULL|1.3495300|-0.1458535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342850|AF426412|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5353|NULL|1.3495300|-0.1458535	chr8	141535726	141536310	+	NA	NA	NA	NA	EIF2C2	NA	chr8:141541264-141546260	inter
LNCA_21_P0003699	0.9294677	A	0.9126839	A	1.01170157766581	0	lncRNA	TCONS_00008379	NA	NA	NA	NA	XLOC_003833	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003833), lincRNA [TCONS_00008379]"	chr4:189099389-189099448	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008379	TCONS_00008379	chr4	189099389	189099448	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8429_PI429285431	7.1214485	P	7.5162606	P	0.760588430998439	0	lncRNA	10000-1_{1..2908}	lnc-DZIP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-DZIP1-1:2	chr13	 96328106	 96331013	-	lnc-DZIP1-1	lnc-DZIP1-1:2	ENSG00000247400	DNAJC3-AS1	DNAJC3	NA	chr13:96329393-96339179	inter
CUST_48137_PI429285431	1.1039	A	1.4449527	A	0.789465047918454	0	lncRNA	52005-1_{1..687}	"gi|310110343|ref|XR_111273.1| PREDICTED: Homo sapiens uncharacterized LOC100509445 (LOC100509445), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310110343|ref|XR_111273.1| PREDICTED: Homo sapiens uncharacterized LOC100509445 (LOC100509445), misc_RNA"	NA	NA	NA	NA	NA	XR_111273.1	NA	NA	NA	NA	NA	Unknown
CUST_46036_PI429285431	7.3405833	P	7.3453937	P	0.996671237458403	0	lncRNA	50314-2_{3001..3622}	"gi|391224462|ref|NR_052006.1| Homo sapiens PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) (PRPF40B), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|391224462|ref|NR_052006.1| Homo sapiens PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) (PRPF40B), transcript variant 2, non-coding RNA"	Chr12	 50020403	 50021024	+	25766	NR_052006.1	NA	NA	NA	NA	NA	inter
CUST_13527_PI429285431	1.0866582	A	1.1875306	A	0.932468955547593	0	lncRNA	15167-1_{1..566}	lnc-WRNIP1-2:31	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRNIP1-2:31	chr6	  2481068	  2481633	+	lnc-WRNIP1-2	lnc-WRNIP1-2:31	XLOC_005127	linc-WRNIP1-2	NA	NA	NA	inter
CUST_18076_PI429285431	0.90925515	A	0.90680236	A	1.00170159053801	0	lncRNA	19811-1_{1..2019}	lnc-AKAP14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AKAP14-1:1	chrX	119126464	119128482	+	lnc-AKAP14-1	lnc-AKAP14-1:1	XLOC_008058	linc-RHOXF2	NA	NA	NA	inter
CUST_30087_PI429285431	4.026863	P	4.630704	P	0.65799977693825	0	lncRNA	31859-1_{1..282}	n334618|U84511|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221874|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221874|-1.1062200|-0.1518949	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334618|U84511|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221874|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221874|-1.1062200|-0.1518949	chr22	 19948931	 19949212	-	NA	NA	NA	NA	COMT	NA	chr22:19938931-19957498	inner
CUST_39293_PI429285431	0.9165922	A	0.91166	A	1.00342459108262	0	lncRNA	40262-1_{1..759}	n386286|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010glf.1||0.8834490|-0.2094096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386286|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010glf.1||0.8834490|-0.2094096	chr21	 19933584	 19934342	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14348_PI429285431	0.91506535	A	0.91511583	A	0.999965010542471	0	lncRNA	16006-1_{1..297}	lnc-FGGY-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGGY-6:1	chr1	 59181166	 59181462	+	lnc-FGGY-6	lnc-FGGY-6:1	XLOC_000218	linc-FGGY-4	NA	NA	NA	inter
CUST_31015_PI429285431	11.782695	P	11.865522	P	0.944205636273044	0	lncRNA	32804-1_{1..305}	n337216|BC113036|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386739|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386739|2.8800800|-0.1424425	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337216|BC113036|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386739|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386739|2.8800800|-0.1424425	chr7	  5568086	  5568390	-	NA	NA	NA	NA	ACTB	NA	chr7:5566779-5570232	inner
LNCA_21_P0004444	0.9251277	A	0.91069645	A	1.01005317729011	0	lncRNA	ENST00000512748	NA	NA	NA	NA	XLOC_005008	NA	ENST00000512748	THC2733343	NA	"BROAD Institute lincRNA (XLOC_005008), lincRNA [TCONS_00010492]"	chr5:133765632-133765576	hs|5q31.1	Agilent_HUMAN_G3V2	ENST00000512748	ENST00000512748	chr5	133765576	133765632	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36820_PI429285431	6.647399	P	6.6053715	P	1.0295597082482	0	lncRNA	37989-2_{3001..4774}	n345297|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_846|NULL|-1.4826700|-0.2689157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345297|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_846|NULL|-1.4826700|-0.2689157	chr15	 82033988	 82035761	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28075_PI429285431	0.898873	A	1.0355753	A	0.90959592747955	0	lncRNA	29694-1_{1..504}	n325342|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326529|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326529|-1.3234900|-0.2591765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325342|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326529|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326529|-1.3234900|-0.2591765	chr2	 37405986	 37406489	+	NA	NA	NA	NA	SULT6B1	NA	chr2:37395986-37415690	inner
CUST_43051_PI429285431	14.96303	P	15.084419	P	0.919302137385498	0	lncRNA	46729-1_{1..126}	ENST00000516307 ncrna:snRNA chromosome:GRCh37:1:67733284:67733409:-1 gene:ENSG00000252116 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516307 ncrna:snRNA chromosome:GRCh37:1:67733284:67733409:-1 gene:ENSG00000252116 gene_biotype:snRNA transcript_biotype:snRNA	chr1	 67733284	 67733409	-	ENSG00000252116	ENST00000516307	NA	NA	IL23R	NA	chr1:67723284-67725662	inter
CUST_33777_PI429285431	2.9512029	A	2.9591012	A	0.994540274397655	0	lncRNA	35330-1_{1..2356}	n340562|AK026822|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3024|NULL|-1.1172000|-0.2819116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340562|AK026822|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3024|NULL|-1.1172000|-0.2819116	chr5	 96113353	 96115708	+	NA	NA	NA	NA	CAST	NA	chr5:96103353-96110387	inner
CUST_51981_PI429285431	1.8635415	A	2.2593567	A	0.760059780758253	0	lncRNA	55519-1_{1..1191}	hg19_lincRNAsTranscripts_TCONS_l2_00017027 range=chr21:35587807-35698013 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017027 range=chr21:35587807-35698013 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr21	 35587807	 35588997	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_50324_PI429285431	5.4924445	P	5.9405456	P	0.733007009730604	0	lncRNA	54042-2_{3001..4114}	hg19_lincRNAsTranscripts_TCONS_l2_00029048 range=chr9:132028944-132051514 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029048 range=chr9:132028944-132051514 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132031944	132033057	+	NA	NA	NA	NA	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60"	NA	inter
CUST_5782_PI429285431	0.90912604	A	0.90147436	A	1.00531783014817	0	lncRNA	5705-1_{1..1514}	"transcript_id ""ENST00000578881.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578881.1"" | genecode_v17"	chr17	 21793031	 21794544	+	ENSG00000264956.1	ENST00000578881.1	RP11-1109M24.5	RP11-1109M24.5-001	NA	NA	NA	inter
CUST_33023_PI429285431	2.6977344	A	1.5145103	A	2.27083691572182	0	lncRNA	34638-1_{1..804}	n339707|CR590377|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2152|NULL|-1.0453800|-0.4487551	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339707|CR590377|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2152|NULL|-1.0453800|-0.4487551	chr3	180326231	180327034	-	NA	NA	NA	NA	CCDC39	"hg19_refFlat_TTC14:range=chr3:180320050-1803283305'pad=0,hg19_refFlat_TTC14:range=chr3:180320050-1803283305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50chr3:180331796-180337035"	NA	inner
CUST_18084_PI429285431	0.91072166	A	0.9157666	A	0.996509221047984	0	lncRNA	19819-1_{1..1224}	lnc-MTA3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTA3-2:2	chr2	 43086850	 43088073	+	lnc-MTA3-2	lnc-MTA3-2:2	XLOC_001446	linc-PLEKHH2-5	NA	NA	NA	inter
CUST_20042_PI429285431	4.767488	P	4.7985415	P	0.978705356027571	0	lncRNA	21693-1_{1..311}	lnc-ZC3H12D-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZC3H12D-4:1	chr6	148604486	148604796	-	lnc-ZC3H12D-4	lnc-ZC3H12D-4:1	ENSG00000224658.1	RP11-631F7.1	NA	NA	NA	inter
CUST_49236_PI429285431	1.543074	A	1.3336296	A	1.15624281450621	0	lncRNA	53056-1_{1..627}	hg19_lincRNAsTranscripts_TCONS_l2_00021497 range=chr4:190858362-190861824 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021497 range=chr4:190858362-190861824 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	190858362	190858988	-	NA	NA	NA	NA	FRG1	NA	chr4:190861974-190871824	inter
CUST_27702_PI429285431	4.452685	P	4.640126	P	0.878161992487356	0	lncRNA	29281-1_{1..376}	n324913|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080138|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080138|-0.7619610|-0.0882484	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324913|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080138|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080138|-0.7619610|-0.0882484	chr20	 61604083	 61604458	+	NA	NA	NA	NA	SLC17A9	NA	chr20:61594083-61599949	inter
CUST_11653_PI429285431	0.9004352	A	1.1111612	A	0.864102284133945	0	lncRNA	13230-1_{1..464}	lnc-CTNNA2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTNNA2-3:1	chr2	 82077312	 82077775	+	lnc-CTNNA2-3	lnc-CTNNA2-3:1	XLOC_001546	linc-DNAH6-4	NA	NA	NA	inter
CUST_38905_PI429285431	2.6925716	A	2.797005	A	0.93017018331301	0	lncRNA	39893-1_{1..1145}	n384959|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pet.1||-0.7268170|-0.2315796	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384959|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pet.1||-0.7268170|-0.2315796	chr6	 68590880	 68592024	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37466_PI429285431	4.707472	P	4.8962407	P	0.877354199219491	0	lncRNA	38565-1_{1..2000}	n345919|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1468|NULL|-1.6304600|-0.1465316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345919|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1468|NULL|-1.6304600|-0.1465316	chr1	 16115909	 16117908	-	NA	NA	NA	NA	FBLIM1	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_RPL12:range=chr9:130210000-1302135965'pad=0,hg19_refFlat_RPL12:range=chr9:130210000-1302135965'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70chr1:16105909-16113084"	NA	inter
CUST_52094_PI429285431	2.2886539	A	1.8263354	A	1.37775417598655	0	lncRNA	55620-1_{1..1872}	hg19_lincRNAsTranscripts_TCONS_l2_00017860 range=chr22:17140318-17160204 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017860 range=chr22:17140318-17160204 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 17140318	 17142189	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50349_PI429285431	9.073195	P	9.048174	P	1.01749450273726	0	lncRNA	54063-1_{1..1102}	hg19_lincRNAsTranscripts_TCONS_l2_00029132 range=chr9:139440652-139444188 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029132 range=chr9:139440652-139444188 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	139440652	139441753	+	NA	NA	NA	NA	NOTCH1	NA	chr9:139430652-139440238	inter
CUST_11201_PI429285431	0.92311096	A	0.99607277	A	0.950684266736443	0	lncRNA	12759-1_{1..751}	lnc-RFT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RFT1-1:1	chr3	 53119766	 53120516	-	lnc-RFT1-1	lnc-RFT1-1:1	XLOC_003130	linc-SFMBT1	RFT1	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr3:53122499-53130488"	NA	inter
CUST_50779_PI429285431	6.4217544	P	6.0213737	P	1.31985614995845	0	lncRNA	54435-1_{1..252}	hg19_lincRNAsTranscripts_TCONS_l2_00004779 range=chr11:116510207-116523818 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004779 range=chr11:116510207-116523818 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	116510207	116510458	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3118_PI429285431	0.904918	A	0.90774435	A	0.998042841204121	0	lncRNA	3097-1_{1..1832}	"transcript_id ""ENST00000519714.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519714.1"" | genecode_v17"	chr8	 58256346	 58258177	+	ENSG00000253871.1	ENST00000519714.1	RP11-756K15.2	RP11-756K15.2-001	NA	NA	NA	inter
CUST_24994_PI429285431	2.752034	A	2.4159567	A	1.26231966573761	0	lncRNA	26535-1_{1..358}	lnc-EIF2D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF2D-1:1	chr1	206808945	206809302	-	lnc-EIF2D-1	lnc-EIF2D-1:1	ENSG00000237605.1	RP11-343H5.6	DYRK3	NA	chr1:206808881-206818967	inner
CUST_18706_PI429285431	0.9748064	A	0.8984824	A	1.05432817739621	0	lncRNA	20404-1_{1..493}	lnc-PROP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PROP1-1:1	chr5	177446441	177446933	-	lnc-PROP1-1	lnc-PROP1-1:1	ENSG00000255684	AC136940.1	NA	NA	NA	inter
CUST_18058_PI429285431	1.0776712	A	1.3235196	A	0.843319722568993	0	lncRNA	19793-1_{1..309}	lnc-SAP30-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SAP30-3:1	chr4	174439782	174440090	+	lnc-SAP30-3	lnc-SAP30-3:1	XLOC_003783	linc-KIAA1712-4	HAND2	NA	chr4:174447652-174449852	inter
CUST_13702_PI429285431	1.1497526	A	1.0902039	A	1.04213971049268	0	lncRNA	15342-1_{1..3000}	lnc-BATF3-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-BATF3-2:3	chr1	212811656	212814655	-	lnc-BATF3-2	lnc-BATF3-2:3	XLOC_001195	linc-TMEM206-2	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60"	NA	inter
CUST_5321_PI429285431	5.290448	P	5.733201	P	0.735729324416248	0	lncRNA	5260-1_{1..341}	"transcript_id ""ENST00000557715.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557715.1"" | genecode_v17"	chr15	 94439493	 94439833	-	ENSG00000258754.3	ENST00000557715.1	CTD-3049M7.1	CTD-3049M7.1-006	NA	NA	NA	inter
CUST_18578_PI429285431	9.483256	P	10.000684	P	0.698616198812274	0	lncRNA	20286-1_{1..1022}	lnc-HIC2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HIC2-1:6	chr22	 21823931	 21824952	+	lnc-HIC2-1	lnc-HIC2-1:6	ENSG00000206140	KB-1323B2.6	TMEM191C	NA	chr22:21821459-21824224	inner
CUST_839_PI429285431	2.8963523	A	3.0137842	A	0.921827108972255	0	lncRNA	833-1_{1..494}	"transcript_id ""ENST00000414796.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414796.1"" | genecode_v17"	chr2	 35223345	 35223838	-	ENSG00000237320.1	ENST00000414796.1	AC019064.1	AC019064.1-001	NA	NA	NA	inter
CUST_35513_PI429285431	1.8308755	A	1.2491161	A	1.49667336394798	0	lncRNA	36920-1_{1..2048}	n342616|BC037784|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5117|NULL|-1.1680700|-0.3683625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342616|BC037784|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5117|NULL|-1.1680700|-0.3683625	chr4	113150716	113152763	-	NA	NA	NA	NA	AP1AR	NA	chr4:113152895-113162752	inter
CUST_27734_PI429285431	4.4490027	P	4.0768676	P	1.29426684937128	0	lncRNA	29316-1_{1..573}	n324950|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000259124|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000259124|-1.0902400|-0.2994766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324950|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000259124|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000259124|-1.0902400|-0.2994766	chr20	 50537867	 50538439	-	NA	NA	NA	NA	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60"	NA	inter
CUST_15374_PI429285431	0.929609	A	0.9155441	A	1.009796722535	0	lncRNA	17057-1_{1..332}	lnc-HACE1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HACE1-3:2	chr6	104951380	104951711	-	lnc-HACE1-3	lnc-HACE1-3:2	XLOC_005793	linc-ASCC3-2	NA	NA	NA	inter
CUST_19495_PI429285431	2.1517427	A	2.8595426	A	0.61225310905273	0	lncRNA	21151-1_{1..249}	lnc-TPSAB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TPSAB1-1:1	chr16	  1307942	  1308190	+	lnc-TPSAB1-1	lnc-TPSAB1-1:1	ENSG00000260182.1	RP11-616M22.5	UBE2I	NA	chr16:1311004-1318075	inner
LNCA_21_P0001699	0.9883871	A	0.9584311	A	1.02098098686828	0	lncRNA	TCONS_00001094	NA	NA	NA	NA	XLOC_000340	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000340), lincRNA [TCONS_00001094]"	chr1:110627718-110627777	hs|1p13.3	Agilent_HUMAN_G3V2	TCONS_00001094	TCONS_00001094	chr1	110627718	110627777	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4356_PI429285431	0.9134752	A	0.90672916	A	1.00468694814745	0	lncRNA	4311-1_{1..777}	"transcript_id ""ENST00000551280.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551280.1"" | genecode_v17"	chr12	 88189510	 88190286	+	ENSG00000257912.1	ENST00000551280.1	RP11-248E9.5	RP11-248E9.5-001	NA	NA	NA	inter
CUST_5331_PI429285431	5.108272	P	5.2354684	P	0.915609032316182	0	lncRNA	5270-1_{1..554}	"transcript_id ""ENST00000556357.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556357.1"" | genecode_v17"	chr15	 94626125	 94626678	-	ENSG00000259724.1	ENST00000556357.1	CTD-2643K12.3	CTD-2643K12.3-002	NA	NA	NA	inter
LNCA_21_P0006147	5.2667637	P	5.4107966	P	0.904985824860116	0	lncRNA	TCONS_00016773	NA	NA	NA	NA	XLOC_007354	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007703), lincRNA [TCONS_00016773]"	chr9:38965027-38965086	hs|9p13.1	Agilent_HUMAN_G3V2	TCONS_00016773	TCONS_00016773	chr9	 38965027	 38965086	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51455_PI429285431	3.9597805	P	3.6740294	P	1.21904476104845	0	lncRNA	55032-1_{1..794}	hg19_lincRNAsTranscripts_TCONS_l2_00009687 range=chr16:32773110-32782125 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009687 range=chr16:32773110-32782125 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 32773110	 32773903	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29822_PI429285431	8.333165	P	7.5870442	P	1.67727680504463	0	lncRNA	31585-1_{1..711}	n333543|D11393|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000100446|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000100446|3.9749600|-0.1108326	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333543|D11393|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000100446|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000100446|3.9749600|-0.1108326	chr22	 36691591	 36692301	-	NA	NA	NA	NA	MYH9	NA	chr22:36681591-36707005	inner
CUST_20581_PI429285431	1.7863814	A	2.2496305	A	0.725350851877141	0	lncRNA	22222-1_{1..765}	lnc-RP11-90J19.1.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-90J19.1.1-1:3	chr15	 47688548	 47689312	-	lnc-RP11-90J19.1.1-1	lnc-RP11-90J19.1.1-1:3	ENSG00000259221.1	CTD-2050N2.1	SEMA6D	"hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0,hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10chr15:47678548-47698788"	NA	inner
CUST_2844_PI429285431	0.9172984	A	0.9195364	A	0.998449939197036	0	lncRNA	2827-1_{1..528}	"transcript_id ""ENST00000418297.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418297.1"" | genecode_v17"	chr7	 62814835	 62815362	+	ENSG00000229301.1	ENST00000418297.1	RP5-905H7.8	RP5-905H7.8-001	NA	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
CUST_7380_PI429285431	0.9234744	A	0.9170179	A	1.00448533390324	0	lncRNA	9026-2_{3001..3348}	lnc-CAMK1G-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CAMK1G-1:2	chr1	209608549	209608896	+	lnc-CAMK1G-1	lnc-CAMK1G-1:2	ENSG00000230937	CTA-55I10.1	LOC642587	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50chr1:209602168-209605894"	NA	inter
CUST_36640_PI429285431	5.50149	P	5.496307	P	1.00359904289394	0	lncRNA	37830-1_{1..855}	n345133|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_682|NULL|-1.2768400|-0.3324455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345133|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_682|NULL|-1.2768400|-0.3324455	chr11	  9782513	  9783367	-	NA	NA	NA	NA	SWAP70	NA	chr11:9772513-9774508	inter
CUST_16432_PI429285431	0.99450266	A	1.1450672	A	0.900897863906865	0	lncRNA	18132-1_{1..498}	lnc-PAM-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAM-1:2	chr5	102057776	102058273	+	lnc-PAM-1	lnc-PAM-1:2	XLOC_004495	linc-PAM-1	NA	NA	NA	inter
CUST_23335_PI429285431	7.3435926	P	7.418178	P	0.949614980975239	0	lncRNA	24905-2_{3001..6000}	lnc-RP11-210M15.2.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-210M15.2.1-4:1	chr15	 80547349	 80550348	-	lnc-RP11-210M15.2.1-4	lnc-RP11-210M15.2.1-4:1	ENSG00000259417.2	RP11-2E17.1	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60"	NA	inter
CUST_14815_PI429285431	1.9650918	A	2.6820428	A	0.608381842175905	0	lncRNA	16475-1_{1..770}	lnc-KCNV1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNV1-2:4	chr8	112039535	112040304	-	lnc-KCNV1-2	lnc-KCNV1-2:4	XLOC_007182	linc-KCNV1-1	NA	NA	NA	inter
CUST_41800_PI429285431	7.784959	P	8.153557	P	0.774534818170795	0	lncRNA	43383-1_{1..109}	ENST00000385062 ncrna:miRNA chromosome:GRCh37:18:33484781:33484889:-1 gene:ENSG00000207797 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385062 ncrna:miRNA chromosome:GRCh37:18:33484781:33484889:-1 gene:ENSG00000207797 gene_biotype:miRNA transcript_biotype:miRNA	chr18	 33484781	 33484889	-	ENSG00000207797	ENST00000385062	NA	NA	NA	NA	NA	inter
CUST_21252_PI429285431	0.935848	A	0.9714394	A	0.975631740763008	0	lncRNA	22878-1_{1..666}	lnc-MARCH4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MARCH4-1:1	chr2	217277148	217277813	-	lnc-MARCH4-1	lnc-MARCH4-1:1	ENSG00000235042.1	AC098820.2	SMARCAL1	NA	chr2:217277137-217287419	inner
CUST_48437_PI429285431	4.8691735	P	5.2197647	P	0.784262650134691	0	lncRNA	52289-1_{1..794}	hg19_lincRNAsTranscripts_TCONS_l2_00002225 range=chr1:157899321-157912986 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002225 range=chr1:157899321-157912986 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	157899321	157900114	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47948_PI429285431	5.8881984	P	5.5773478	P	1.24043883594574	0	lncRNA	51840-1_{1..584}	"gi|410172469|ref|XR_171794.1| PREDICTED: Homo sapiens uncharacterized LOC100507009 (LOC100507009), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|410172469|ref|XR_171794.1| PREDICTED: Homo sapiens uncharacterized LOC100507009 (LOC100507009), misc_RNA"	NA	NA	NA	NA	NA	XR_171794.1	NA	NA	NA	NA	NA	Unknown
CUST_47825_PI429285431	1.9978958	A	1.8330948	A	1.12101143920583	0	lncRNA	51738-1_{1..2124}	"gi|410170903|ref|XR_159160.2| PREDICTED: Homo sapiens D(1B) dopamine receptor-like (LOC100996730), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170903|ref|XR_159160.2| PREDICTED: Homo sapiens D(1B) dopamine receptor-like (LOC100996730), misc_RNA"	NA	NA	NA	NA	NA	XR_159160.2	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010974	1.0439488	A	1.0132308	A	1.02152038915645	0	lncRNA	TCONS_l2_00004519	NA	NA	NA	NA	XLOC_l2_002311	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002311), lincRNA [TCONS_l2_00004519]"	chr11:50266804-50266863	hs|11p11.12	Agilent_HUMAN_G3V2	TCONS_l2_00004519	TCONS_l2_00004519	chr11	 50266804	 50266863	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9862_PI429285431	0.9276315	A	2.0416481	A	0.462005970239776	0	lncRNA	11383-1_{1..999}	lnc-WDR69-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR69-1:1	chr2	229378951	229379949	+	lnc-WDR69-1	lnc-WDR69-1:1	XLOC_001891	linc-FBXO36-3	NA	NA	NA	inter
CUST_3015_PI429285431	2.8500473	A	3.6448	P	0.576441975903996	0	lncRNA	2994-1_{1..1247}	"transcript_id ""ENST00000534827.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534827.1"" | genecode_v17"	chr8	 12623358	 12624604	-	ENSG00000254813.1	ENST00000534827.1	RP11-252C15.1	RP11-252C15.1-001	NA	NA	NA	inter
CUST_51102_PI429285431	0.91740525	A	0.91650647	A	1.00062318091954	0	lncRNA	54741-1_{1..1471}	hg19_lincRNAsTranscripts_TCONS_l2_00006907 range=chr13:74125367-74162782 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006907 range=chr13:74125367-74162782 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 74125367	 74126837	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35793_PI429285431	1.0914092	A	1.7767786	A	0.621846583335604	0	lncRNA	37204-1_{1..3000}	n344474|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_22|NULL|-1.3190300|-0.2802263	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344474|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_22|NULL|-1.3190300|-0.2802263	chr1	232254254	232257253	+	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90"	NA	inter
CUST_20076_PI429285431	7.1141443	P	7.063589	P	1.03566347880109	0	lncRNA	21724-1_{1..495}	lnc-TMPRSS2-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMPRSS2-4:3	chr21	 42558088	 42558582	-	lnc-TMPRSS2-4	lnc-TMPRSS2-4:3	ENSG00000225745.4	AL773572.7	BACE2	NA	chr21:42548088-42568269	inner
CUST_43904_PI429285431	0.914251	A	1.0372727	A	0.918262350343236	0	lncRNA	48618-1_{1..803}	"gi|341915172|ref|XR_109918.2| PREDICTED: Homo sapiens uncharacterized LOC100506076, transcript variant 2 (LOC100506076), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915172|ref|XR_109918.2| PREDICTED: Homo sapiens uncharacterized LOC100506076, transcript variant 2 (LOC100506076), misc_RNA"	NA	NA	NA	NA	NA	XR_109918.2	NA	NA	NA	NA	NA	Unknown
CUST_9581_PI429285431	6.1068306	P	6.231369	P	0.917297491770489	0	lncRNA	11097-1_{1..445}	lnc-C10orf137-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf137-1:3	chr10	127389030	127389474	+	lnc-C10orf137-1	lnc-C10orf137-1:3	XLOC_008661	linc-C10orf137-1	NA	NA	NA	inter
CUST_32949_PI429285431	6.175073	P	5.013109	P	2.23761836541577	0	lncRNA	34569-1_{1..1396}	n339624|CR597580|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2068|NULL|-0.4057040|-0.3106242	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339624|CR597580|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2068|NULL|-0.4057040|-0.3106242	chr20	 30920011	 30921406	+	NA	NA	NA	NA	KIF3B	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.30;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30chr20:30910011-30922814"	NA	inner
CUST_8124_PI429285431	0.9237132	A	1.5992641	A	0.626093097017044	0	lncRNA	9729-1_{1..3000}	lnc-ERC1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ERC1-1:2	chr12	  1615339	  1618338	+	lnc-ERC1-1	lnc-ERC1-1:2	ENSG00000249628	ENST00000515614	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50"	NA	inter
CUST_20467_PI429285431	0.9284597	A	0.9232751	A	1.00360015592152	0	lncRNA	22111-1_{1..367}	lnc-MARCKS-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MARCKS-3:1	chr6	114260911	114261277	+	lnc-MARCKS-3	lnc-MARCKS-3:1	ENSG00000226099.1	RP11-544L8__B.2	HDAC2	NA	chr6:114257320-114271212	inter
CUST_10317_PI429285431	5.2446065	P	5.752049	P	0.70346838841463	0	lncRNA	11845-1_{1..548}	lnc-PRDM9-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRDM9-3:1	chr5	 21154654	 21155201	+	lnc-PRDM9-3	lnc-PRDM9-3:1	XLOC_004312	linc-PRDM9-4	NA	NA	NA	inter
CUST_31421_PI429285431	7.851635	P	8.057496	P	0.867021094769208	0	lncRNA	33193-1_{1..561}	n337888|BC030106|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|271|NULL|-1.2874300|-0.2000945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337888|BC030106|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|271|NULL|-1.2874300|-0.2000945	chrX	152864798	152865358	+	NA	NA	NA	NA	FAM58A	NA	chrX:152854798-152864632	inter
CUST_35461_PI429285431	6.9800844	P	6.5887475	P	1.31160826690407	0	lncRNA	36865-1_{1..2677}	n342540|AX747004|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5037|NULL|1.0306600|-0.1752145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342540|AX747004|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5037|NULL|1.0306600|-0.1752145	chr3	129036948	129039624	+	NA	NA	NA	NA	H1FX	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NUP210:range=chr3:13359181-134617265'pad=0,hg19_refFlat_NUP210:range=chr3:13359181-134617265'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90chr3:129033614-129035120"	NA	inter
CUST_49026_PI429285431	2.6758533	A	2.6565742	A	1.0134529411445	0	lncRNA	52855-1_{1..548}	hg19_lincRNAsTranscripts_TCONS_l2_00020483 range=chr4:37075872-37112616 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020483 range=chr4:37075872-37112616 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 37075872	 37076419	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18213_PI429285431	0.9785137	A	1.1055226	A	0.915728037265367	0	lncRNA	19948-1_{1..635}	lnc-SLC39A11-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC39A11-3:3	chr17	 70053600	 70054234	-	lnc-SLC39A11-3	lnc-SLC39A11-3:3	ENSG00000254148	RP11-84E24.2	NA	NA	NA	inter
CUST_17249_PI429285431	4.7484612	P	4.7589636	P	0.992746723951912	0	lncRNA	18967-1_{1..770}	lnc-ATP6V1E2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP6V1E2-2:1	chr2	 46523305	 46524074	-	lnc-ATP6V1E2-2	lnc-ATP6V1E2-2:1	XLOC_002081	linc-SRBD1-2	EPAS1	NA	chr2:46513305-46533596	inter
CUST_9429_PI429285431	0.98104984	A	1.316964	A	0.792281950103684	0	lncRNA	10935-1_{1..752}	lnc-TMED5-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMED5-1:9	chr1	 93811281	 93812032	-	lnc-TMED5-1	lnc-TMED5-1:9	XLOC_000918	linc-TMED5	DR1	NA	chr1:93811478-93821357	inter
CUST_46337_PI429285431	9.728718	P	9.982354	P	0.838779786560888	0	lncRNA	50563-1_{1..856}	"gi|402794821|ref|NR_073138.1| Homo sapiens MYC associated factor X (MAX), transcript variant 10, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402794821|ref|NR_073138.1| Homo sapiens MYC associated factor X (MAX), transcript variant 10, non-coding RNA"	Chr14	 65550457	 65551312	-	4149	NR_073138.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0013611	2.971759	A	1.8539281	A	2.17020435662405	0	lncRNA	TCONS_l2_00029161	NA	NA	NA	NA	XLOC_l2_015090	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015090), lincRNA [TCONS_l2_00029161]"	chr9:100423-100364	hs|9p24.3	Agilent_HUMAN_G3V2	TCONS_l2_00029161	TCONS_l2_00029161	chr9	   100364	   100423	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45911_PI429285431	10.454703	P	10.036385	P	1.33636860937107	0	lncRNA	50221-1_{1..641}	"gi|223278395|ref|NR_003040.2| Homo sapiens ribosomal protein L23a pseudogene 64 (RPL23AP64), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223278395|ref|NR_003040.2| Homo sapiens ribosomal protein L23a pseudogene 64 (RPL23AP64), non-coding RNA"	NW_003871076.1	    24553	    25193	-	649946	NR_003040.2	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50"	NA	Unknown
CUST_701_PI429285431	1.0893973	A	1.1085669	A	0.986800533004842	0	lncRNA	694-1_{1..722}	"transcript_id ""ENST00000593277.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593277.1"" | genecode_v17"	chr2	  6774781	  6775502	-	ENSG00000236172.2	ENST00000593277.1	AC097517.2	AC097517.2-018	NA	NA	NA	inter
CUST_38630_PI429285431	0.929235	A	1.161819	A	0.851109110781373	0	lncRNA	39633-1_{1..2346}	n383815|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vpk.1||-0.1145760|-0.3014678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383815|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vpk.1||-0.1145760|-0.3014678	chr2	228573100	228575445	-	NA	NA	NA	NA	SLC19A3	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.30chr2:228563100-228582745"	NA	inner
CUST_17000_PI429285431	0.9283925	A	0.9230173	A	1.00373275416344	0	lncRNA	18709-1_{1..739}	lnc-S1PR1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-S1PR1-2:3	chr1	101630395	101631133	+	lnc-S1PR1-2	lnc-S1PR1-2:3	XLOC_000318	linc-S1PR1	NA	NA	NA	inter
CUST_6928_PI429285431	6.8158417	P	7.28219	P	0.723794324379709	0	lncRNA	6880-1_{1..354}	"transcript_id ""ENST00000448747.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448747.1"" | genecode_v17"	chr22	 20378909	 20379262	+	ENSG00000206176.5	ENST00000448747.1	AC023490.1	AC023490.1-005	TMEM191B	NA	chr22:20368909-20380440	inner
CUST_37065_PI429285431	9.166921	P	9.223474	P	0.961558808533619	0	lncRNA	38197-1_{1..740}	n345514|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1063|NULL|-1.3027800|-0.2062485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345514|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1063|NULL|-1.3027800|-0.2062485	chr2	 20382136	 20382875	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31018_PI429285431	6.5222588	P	6.515767	P	1.00450991204698	0	lncRNA	32807-1_{1..449}	n337221|BC113104|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386803|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386803|-0.9988570|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337221|BC113104|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386803|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386803|-0.9988570|-1.0000000	chr11	123601238	123601686	+	NA	NA	NA	NA	ZNF202	"hg19_refFlat_ZNF202:range=chr11:123596705-1236015965'pad=0,hg19_refFlat_ZNF202:range=chr11:123596705-1236015965'pad=0 3'pad=0 strand=- repeatMasking=none,-97.30chr11:123594997-123611687"	NA	inner
CUST_49507_PI429285431	1.7128477	A	2.3204226	A	0.656298981809402	0	lncRNA	53298-1_{1..893}	hg19_lincRNAsTranscripts_TCONS_l2_00024665 range=chr6:26839231-26863609 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024665 range=chr6:26839231-26863609 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 26839231	 26840123	-	NA	NA	NA	NA	LOC100507141	NA	chr6:26864941-26865525	inter
CUST_8008_PI429285431	0.9067789	A	0.900964	A	1.00403871525821	0	lncRNA	9619-1_{1..930}	lnc-TMEM75-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM75-3:4	chr8	128433074	128434003	-	lnc-TMEM75-3	lnc-TMEM75-3:4	ENSG00000246228	RP11-382A18.1	POU5F1B	NA	chr8:128427857-128429455	inter
CUST_35584_PI429285431	3.1387012	P	2.795576	A	1.26850147767888	0	lncRNA	36999-2_{3001..6000}	n342719|AL832149|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5221|NULL|0.4297870|-0.3572989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342719|AL832149|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5221|NULL|0.4297870|-0.3572989	chr17	 65069553	 65072552	-	NA	NA	NA	NA	HELZ	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr17:65066554-65083490"	NA	inner
CUST_6634_PI429285431	6.9126205	P	7.1484485	P	0.849197482852599	0	lncRNA	6580-1_{1..932}	"transcript_id ""ENST00000445589.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445589.1"" | genecode_v17"	chr20	  6711905	  6712836	-	ENSG00000228482.1	ENST00000445589.1	RP5-859D4.3	RP5-859D4.3-001	NA	NA	NA	inter
CUST_49771_PI429285431	6.6852436	P	7.4257026	P	0.598548890956424	0	lncRNA	53533-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00025878 range=chr7:55808105-55816936 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025878 range=chr7:55808105-55816936 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 55808105	 55811104	+	NA	NA	NA	NA	LOC100128326	NA	chr7:55810070-55815779	inter
CUST_40988_PI429285431	3.929957	P	4.2992887	P	0.774141019271777	0	lncRNA	41656-1_{1..1338}	n411132|NR_038956|lncRNA|Homosapiens||RefGeneNoncode|NR_038956||-1.0842000|-0.2299420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n411132|NR_038956|lncRNA|Homosapiens||RefGeneNoncode|NR_038956||-1.0842000|-0.2299420	chr22	 45529638	 45530975	-	NA	NA	NA	NA	NUP50	NA	chr22:45559726-45569662	inter
CUST_8443_PI429285431	2.2478642	A	2.371142	A	0.918099359475685	0	lncRNA	10013-1_{1..728}	lnc-GLTP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLTP-1:1	chr12	110325598	110326325	-	lnc-GLTP-1	lnc-GLTP-1:1	ENSG00000249094	ENST00000446473	GLTP	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10chr12:110315598-110318293"	NA	inter
LNCA_21_P0008398	1.731993	A	3.627342	P	0.268808562708242	0	lncRNA	TCONS_00022642	NA	NA	NA	NA	XLOC_010945	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010945), lincRNA [TCONS_00022642]"	chr14:104346608-104346667	hs|14q32.33	Agilent_HUMAN_G3V2	TCONS_00022642	TCONS_00022642	chr14	104346608	104346667	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49743_PI429285431	2.4987764	A	1.8104742	A	1.61138608230524	0	lncRNA	53513-2_{3001..3353}	hg19_lincRNAsTranscripts_TCONS_l2_00026539 range=chr7:45763408-45808576 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026539 range=chr7:45763408-45808576 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 45766408	 45766760	-	NA	NA	NA	NA	ADCY1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60chr7:45753408-45762715"	NA	inter
CUST_32104_PI429285431	1.2470944	A	2.1676378	A	0.528309991578165	0	lncRNA	33808-1_{1..1168}	n338670|AK129539|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1084|NULL|-1.1434800|-0.1871640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338670|AK129539|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1084|NULL|-1.1434800|-0.1871640	chr13	 42207140	 42208307	-	NA	NA	NA	NA	KIAA0564	NA	chr13:42197140-42218291	inner
LNCA_21_P0013759	5.4486346	P	5.141631	P	1.23713556574463	0	lncRNA	THC2487640	NA	NA	NA	NA	XLOC_l2_015491	NA	NA	THC2487640	NA	"BROAD Institute lincRNA (XLOC_l2_015491), lincRNA [TCONS_l2_00030182]"	chrX:040694958-040695017	hs|Xp11.4	Agilent_HUMAN_G3V2	THC2487640	THC2487640	chrX	 40694958	 40695017	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29020_PI429285431	4.4204316	P	4.5060987	P	0.942348694551909	0	lncRNA	30747-1_{1..495}	n326507|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029680|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029680|-1.2744300|-0.4253306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326507|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029680|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029680|-1.2744300|-0.4253306	chr1	 99710505	 99710999	-	NA	NA	NA	NA	LPPR4	NA	chr1:99729848-99775140	inner
CUST_27489_PI429285431	2.908829	A	3.138363	A	0.852910342937447	0	lncRNA	29060-1_{1..1242}	n324666|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319662|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319662|0.3890440|-0.3266904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324666|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319662|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319662|0.3890440|-0.3266904	chr22	 40995702	 40996943	+	NA	NA	NA	NA	MKL1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.21;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10chr22:40985702-41010812"	NA	inner
CUST_47155_PI429285431	9.441114	P	9.441114	P	1	0	lncRNA	51234-1_{1..2097}	"gi|258614016|ref|NR_028450.1| Homo sapiens branched chain amino-acid transaminase 2, mitochondrial (BCAT2), transcript variant c, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|258614016|ref|NR_028450.1| Homo sapiens branched chain amino-acid transaminase 2, mitochondrial (BCAT2), transcript variant c, non-coding RNA"	Chr19	 49298319	 49300415	-	587	NR_028450.1	NA	NA	NA	NA	NA	inter
CUST_26267_PI429285431	5.026959	P	5.593713	P	0.675134102702885	0	lncRNA	27773-2_{3001..4363}	lnc-HGF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-HGF-1:1	chr7	 81258430	 81259792	-	lnc-HGF-1	lnc-HGF-1:1	ENSG00000233491.2	AC010091.1	NA	NA	NA	inter
CUST_28903_PI429285431	2.38055	A	3.0270236	A	0.638839932313366	0	lncRNA	30620-1_{1..853}	n326327|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090606|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090606|-1.1960400|-0.5003126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326327|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090606|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090606|-1.1960400|-0.5003126	chr1	172097912	172098764	+	NA	NA	NA	NA	DNM3	NA	chr1:172087912-172109702	inner
CUST_20618_PI429285431	3.0461879	A	3.4692414	P	0.745844354407633	0	lncRNA	22257-1_{1..255}	lnc-CTD-3080F16.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CTD-3080F16.3.1-1:1	chr8	 41134481	 41134735	-	lnc-CTD-3080F16.3.1-1	lnc-CTD-3080F16.3.1-1:1	ENSG00000253509.1	CTD-3080F16.3	SFRP1	NA	chr8:41124481-41144522	inner
CUST_36247_PI429285431	0.92317814	A	0.9951217	A	0.951355493797906	0	lncRNA	37492-1_{1..3000}	n344785|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_334|NULL|-1.4153100|-0.2582917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344785|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_334|NULL|-1.4153100|-0.2582917	chr6	  6680541	  6683540	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24563_PI429285431	1.0058362	A	1.8236849	A	0.567287232557947	0	lncRNA	26111-1_{1..581}	lnc-RP11-90J19.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-90J19.1.1-2:1	chr15	 47691566	 47692146	-	lnc-RP11-90J19.1.1-2	lnc-RP11-90J19.1.1-2:1	ENSG00000259360.1	RP11-142J21.1	SEMA6D	NA	chr15:47681566-47701751	inner
CUST_16073_PI429285431	0.918968	A	0.9155621	A	1.00236357884114	0	lncRNA	17776-1_{1..212}	lnc-STK3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STK3-1:1	chr8	 99401092	 99401303	-	lnc-STK3-1	lnc-STK3-1:1	XLOC_007169	linc-NIPAL2-2	NA	NA	NA	inter
CUST_1405_PI429285431	1.1107538	A	0.91258425	A	1.14724184372685	0	lncRNA	1394-1_{1..2305}	"transcript_id ""ENST00000462011.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000462011.1"" | genecode_v17"	chr3	 99316908	 99319212	+	ENSG00000244464.1	ENST00000462011.1	RP11-201E8.1	RP11-201E8.1-001	NA	NA	NA	inter
CUST_49139_PI429285431	5.7675953	P	5.813941	P	0.968386115792512	0	lncRNA	52966-1_{1..819}	hg19_lincRNAsTranscripts_TCONS_l2_00021241 range=chr4:110268167-110278396 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021241 range=chr4:110268167-110278396 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	110268167	110268985	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007809	0.92745495	A	1.0774505	A	0.901253242526634	0	lncRNA	TCONS_00021005	NA	NA	NA	NA	XLOC_010266	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010266), lincRNA [TCONS_00021005]"	chr12:131254745-131254686	hs|12q24.33	Agilent_HUMAN_G3V2	TCONS_00021005	TCONS_00021005	chr12	131254686	131254745	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43529_PI429285431	1.9409215	A	1.6973886	A	1.18388824342601	0	lncRNA	48313-1_{1..1950}	"gi|410170389|ref|XR_110481.3| PREDICTED: Homo sapiens uncharacterized LOC100506029 (LOC100506029), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410170389|ref|XR_110481.3| PREDICTED: Homo sapiens uncharacterized LOC100506029 (LOC100506029), misc_RNA"	NA	NA	NA	NA	NA	XR_110481.3	NA	NA	NA	NA	NA	Unknown
CUST_7075_PI429285431	0.9208952	A	0.91226983	A	1.00599655870044	0	lncRNA	7017-6_{15001..18000}	"transcript_id ""ENST00000604411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000604411.1"" | genecode_v17"	chrX	 73027040	 73030039	+	ENSG00000270641.1	ENST00000604411.1	TSIX	TSIX-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_51229_PI429285431	2.149919	A	2.915508	P	0.588213173500912	0	lncRNA	54846-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00008416 range=chr15:23094157-23106207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008416 range=chr15:23094157-23106207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 23097157	 23100156	+	NA	NA	NA	NA	NIPA1	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70chr15:23084157-23086843"	NA	inter
CUST_3390_PI429285431	1.762318	A	3.0325637	A	0.414589159764287	0	lncRNA	3363-1_{1..1144}	"transcript_id ""ENST00000449144.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449144.1"" | genecode_v17"	chr9	 33719688	 33720831	+	ENSG00000227301.1	ENST00000449144.1	RP11-384P7.5	RP11-384P7.5-001	NA	NA	NA	inter
CUST_4124_PI429285431	3.3224378	P	2.5877528	A	1.66403410228335	0	lncRNA	4084-1_{1..389}	"transcript_id ""ENST00000529417.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000529417.1"" | genecode_v17"	chr11	134541320	134541708	-	ENSG00000254989.1	ENST00000529417.1	RP11-469N6.3	RP11-469N6.3-001	NA	NA	NA	inter
CUST_22689_PI429285431	0.9190612	A	0.91445565	A	1.00319742489014	0	lncRNA	24272-1_{1..762}	lnc-IKZF1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IKZF1-2:2	chr7	 51090295	 51091056	+	lnc-IKZF1-2	lnc-IKZF1-2:2	ENSG00000228204.2	RP4-724E13.2	COBL	NA	chr7:51083909-51100687	inner
CUST_19985_PI429285431	0.91788745	A	0.9209151	A	0.997903593474954	0	lncRNA	21638-1_{1..544}	lnc-TOR1AIP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TOR1AIP2-2:1	chr1	179787127	179787670	-	lnc-TOR1AIP2-2	lnc-TOR1AIP2-2:1	ENSG00000229407.1	RP11-12M5.3	FAM163A	NA	chr1:179777127-179785333	inter
CUST_9029_PI429285431	0.9172526	A	0.92100155	A	0.997404799248558	0	lncRNA	10556-2_{3001..3242}	lnc-COPG2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-COPG2-1:1	chr7	130133683	130133924	-	lnc-COPG2-1	lnc-COPG2-1:1	ENSG00000246011	MESTIT1	MEST	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr7:130126046-130141013"	NA	inner
CUST_41897_PI429285431	3.8474393	P	3.7069354	P	1.10229005306114	0	lncRNA	43612-1_{1..110}	ENST00000384871 ncrna:miRNA chromosome:GRCh37:9:86584663:86584772:-1 gene:ENSG00000207603 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384871 ncrna:miRNA chromosome:GRCh37:9:86584663:86584772:-1 gene:ENSG00000207603 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 86584663	 86584772	-	ENSG00000207603	ENST00000384871	NA	NA	HNRNPK	NA	chr9:86582998-86594772	inner
CUST_41415_PI429285431	1.0589501	A	1.2235891	A	0.892151731169232	0	lncRNA	42555-1_{1..71}	ENST00000582250 ncrna:miRNA chromosome:GRCh37:12:94955565:94955635:1 gene:ENSG00000266099 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582250 ncrna:miRNA chromosome:GRCh37:12:94955565:94955635:1 gene:ENSG00000266099 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 94955565	 94955635	+	ENSG00000266099	ENST00000582250	NA	NA	TMCC3	NA	chr12:94960900-94965635	inter
CUST_48924_PI429285431	5.7201543	P	5.7240005	P	0.997337567890012	0	lncRNA	52767-1_{1..444}	hg19_lincRNAsTranscripts_TCONS_l2_00018863 range=chr3:130548445-130555377 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018863 range=chr3:130548445-130555377 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	130548445	130548888	+	NA	NA	NA	NA	ATP2C1	NA	chr3:130546482-130565377	inter
CUST_39681_PI429285431	0.9075553	A	0.8999033	A	1.00531805313483	0	lncRNA	40621-1_{1..2020}	n405391|NR_002139_3|lncRNA|Homosapiens||RefGeneNoncode|NR_002139_3||-0.9993090|-0.3997151	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405391|NR_002139_3|lncRNA|Homosapiens||RefGeneNoncode|NR_002139_3||-0.9993090|-0.3997151	chr6	  1059611	  1061630	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38095_PI429285431	6.9697328	P	7.838848	P	0.547482516868402	0	lncRNA	39171-1_{1..2713}	n381106|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001buv.3||1.5696300|-0.1314746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381106|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001buv.3||1.5696300|-0.1314746	chr1	 32697261	 32699973	-	NA	NA	NA	NA	TMEM234	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10chr1:32687261-32687926"	NA	inter
LNCA_21_P0005156	0.9243082	A	0.9116694	A	1.00879903449522	0	lncRNA	TCONS_00012661	NA	NA	NA	NA	XLOC_005621	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005621), lincRNA [TCONS_00012661]"	chr6:15749843-15749784	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00012661	TCONS_00012661	chr6	 15749784	 15749843	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24482_PI429285431	3.1712842	P	2.722434	A	1.36495198285662	0	lncRNA	26034-1_{1..542}	lnc-PLP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLP2-1:1	chrX	 49058631	 49059172	+	lnc-PLP2-1	lnc-PLP2-1:1	ENSG00000237341.1	SYP-AS1	SYP	"hg19_refFlat_SYP:range=chrX:49047894-490566455'pad=0,hg19_refFlat_SYP:range=chrX:49047894-490566455'pad=0 3'pad=0 strand=- repeatMasking=none,-98.80chrX:49048631-49056661"	NA	inter
CUST_13503_PI429285431	1.601687	A	1.6583273	A	0.9615006246889	0	lncRNA	15143-1_{1..207}	lnc-TMTC3-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMTC3-6:1	chr12	 90501505	 90501711	+	lnc-TMTC3-6	lnc-TMTC3-6:1	XLOC_009829	linc-CLLU1-6	NA	NA	NA	inter
CUST_49247_PI429285431	3.0125763	A	1.4647614	A	2.92373975241286	0	lncRNA	53066-4_{9001..9349}	hg19_lincRNAsTranscripts_TCONS_l2_00022197 range=chr5:10564450-10657959 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022197 range=chr5:10564450-10657959 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 10573450	 10573798	+	NA	NA	NA	NA	ANKRD33B	NA	chr5:10564435-10657928	inner
LNCA_21_P0005873	0.92448735	A	1.3180833	A	0.761229855258862	0	lncRNA	TCONS_00015107	NA	NA	NA	NA	XLOC_007162	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007162), lincRNA [TCONS_00015107]"	chr8:95650283-95649930	hs|8q22.1	Agilent_HUMAN_G3V2	TCONS_00015107	TCONS_00015107	chr8	 95649930	 95650283	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19504_PI429285431	3.619998	P	3.9943275	P	0.771463871233649	0	lncRNA	21160-1_{1..739}	lnc-UNC93B1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UNC93B1-2:1	chr11	 67797726	 67798464	-	lnc-UNC93B1-2	lnc-UNC93B1-2:1	ENSG00000255306.1	RP5-901A4.1	ALDH3B1	NA	chr11:67787726-67796743	inter
CUST_27934_PI429285431	0.9900888	A	1.096532	A	0.928875277301484	0	lncRNA	29536-1_{1..3000}	n325179|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331943|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331943|7.0920000|-0.2944677	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325179|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331943|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331943|7.0920000|-0.2944677	chr2	111183622	111186621	-	NA	NA	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60"	NA	inter
CUST_40841_PI429285431	1.4078667	A	1.0375248	A	1.29265913777892	0	lncRNA	41544-1_{1..1316}	n410613|NR_037860_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037860_5||-0.8481960|-0.3117817	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410613|NR_037860_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037860_5||-0.8481960|-0.3117817	chr6	  3480108	  3481423	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37388_PI429285431	4.673934	P	5.0105104	P	0.791918352544854	0	lncRNA	38492-1_{1..478}	n345840|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1389|NULL|-1.3394700|-0.2822996	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345840|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1389|NULL|-1.3394700|-0.2822996	chr13	 34253575	 34254052	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39484_PI429285431	1.504551	A	2.4264905	A	0.527798991819079	0	lncRNA	40431-1_{1..2127}	n387175|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010zob.1||-0.6822720|-0.2178015	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387175|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010zob.1||-0.6822720|-0.2178015	chr2	240115026	240117152	-	NA	NA	NA	NA	HDAC4	NA	chr2:240105026-240127153	inner
CUST_22390_PI429285431	7.5220356	P	7.3074822	P	1.16034466303225	0	lncRNA	23980-1_{1..428}	lnc-MEGF11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-MEGF11-2:1	chr15	 66059626	 66060053	-	lnc-MEGF11-2	lnc-MEGF11-2:1	ENSG00000261544.1	RP11-16E23.3	DENND4A	NA	chr15:66049626-66069736	inner
CUST_27998_PI429285431	0.90722907	A	0.90052277	A	1.00465927375453	0	lncRNA	29607-1_{1..390}	n325252|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328143|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328143|-1.1672200|-0.3068566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325252|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328143|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328143|-1.1672200|-0.3068566	chr2	 74065766	 74066155	+	NA	NA	NA	NA	STAMBP	NA	chr2:74056043-74076978	inner
CUST_26303_PI429285431	1.2026888	A	1.5442961	A	0.789161620543044	0	lncRNA	27809-1_{1..662}	lnc-SLC7A7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC7A7-1:1	chr14	 23235633	 23236294	-	lnc-SLC7A7-1	lnc-SLC7A7-1:1	ENSG00000258458.1	CTD-2555K7.2	SLC7A7	"hg19_refFlat_OXA1L:range=chr14:23235731-232407675'pad=0,hg19_refFlat_OXA1L:range=chr14:23235731-232407675'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30chr14:23242431-23245771"	NA	inner
CUST_45651_PI429285431	0.9259191	A	0.92124367	A	1.00324601806603	0	lncRNA	50028-1_{1..2141}	"gi|259089419|ref|NR_028492.1| Homo sapiens cofilin 1 (non-muscle) pseudogene 1 (CFL1P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|259089419|ref|NR_028492.1| Homo sapiens cofilin 1 (non-muscle) pseudogene 1 (CFL1P1), non-coding RNA"	Chr10	 89578070	 89580210	+	142913	NR_028492.1	NA	NA	NA	NA	NA	inter
CUST_39275_PI429285431	7.2985115	P	7.784813	P	0.713852790530649	0	lncRNA	40247-1_{1..1113}	n386238|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fcy.1||3.0542600|-0.2007858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n386238|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fcy.1||3.0542600|-0.2007858	chr2	 65663844	 65664956	+	NA	NA	NA	NA	SPRED2	NA	chr2:65653844-65659656	inter
CUST_12027_PI429285431	1.0607202	A	1.2786202	A	0.859816082086858	0	lncRNA	13609-1_{1..238}	lnc-ST6GAL2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ST6GAL2-4:1	chr2	108267399	108267636	-	lnc-ST6GAL2-4	lnc-ST6GAL2-4:1	XLOC_002253	linc-ST6GAL2-3	NA	NA	NA	inter
CUST_42526_PI429285431	0.94058955	A	0.9207536	A	1.01384418820659	0	lncRNA	45319-1_{1..66}	ENST00000391075 ncrna:snoRNA chromosome:GRCh37:13:73028040:73028105:-1 gene:ENSG00000212377 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391075 ncrna:snoRNA chromosome:GRCh37:13:73028040:73028105:-1 gene:ENSG00000212377 gene_biotype:snoRNA transcript_biotype:snoRNA	chr13	 73028040	 73028105	-	ENSG00000212377	ENST00000391075	NA	NA	NA	NA	NA	inter
CUST_51915_PI429285431	3.750133	P	4.221625	P	0.721218345539376	0	lncRNA	55457-2_{3001..3232}	hg19_lincRNAsTranscripts_TCONS_l2_00016543 range=chr20:25815535-25835284 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016543 range=chr20:25815535-25835284 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	 25818535	 25818766	-	NA	NA	NA	NA	LOC100289375	NA	chr20:25825857-25845284	inter
CUST_36238_PI429285431	2.7529259	A	0.90365565	A	3.60317881453517	0	lncRNA	37486-2_{3001..6000}	n344778|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_327|NULL|-1.3305700|-0.3589219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344778|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_327|NULL|-1.3305700|-0.3589219	chr15	 41579183	 41582182	+	NA	NA	NA	NA	CHP	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70chr15:41566183-41574085"	NA	inter
CUST_20146_PI429285431	0.926424	A	0.96718013	A	0.972145303399411	0	lncRNA	21791-1_{1..574}	lnc-NPIPL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPIPL2-2:1	chr16	 74469068	 74469641	+	lnc-NPIPL2-2	lnc-NPIPL2-2:1	ENSG00000261170.1	RP11-252A24.5	NA	NA	NA	inter
CUST_25625_PI429285431	5.4034715	P	5.9233813	P	0.6974154355333	0	lncRNA	27155-1_{1..958}	lnc-HLA-DQA2-10:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HLA-DQA2-10:2	chr6	 32813107	 32814064	+	lnc-HLA-DQA2-10	lnc-HLA-DQA2-10:2	ENSG00000204261.4	XXbac-BPG246D15.8	TAP2	"hg19_refFlat_TAP1:range=chr6_mann_hap4:4270552-42787895'pad=0,hg19_refFlat_TAP1:range=chr6_mann_hap4:4270552-42787895'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_apd_hap1:4100360-41085975'pad=0,hg19_refFlat_TAP1:range=chr6_apd_hap1:4100360-41085975'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6:32813356-328215935'pad=0,hg19_refFlat_TAP1:range=chr6:32813356-328215935'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_cox_hap2:4257884-42661215'pad=0,hg19_refFlat_TAP1:range=chr6_cox_hap2:4257884-42661215'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_mcf_hap5:4150233-41584705'pad=0,hg19_refFlat_TAP1:range=chr6_mcf_hap5:4150233-41584705'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_ssto_hap7:4244129-42523665'pad=0,hg19_refFlat_TAP1:range=chr6_ssto_hap7:4244129-42523665'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_dbb_hap3:4094734-41029715'pad=0,hg19_refFlat_TAP1:range=chr6_dbb_hap3:4094734-41029715'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_qbl_hap6:4045463-40537005'pad=0,hg19_refFlat_TAP1:range=chr6_qbl_hap6:4045463-40537005'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50chr6:32803107-32806547"	NA	inner
CUST_51624_PI429285431	1.3254007	A	1.6406924	A	0.803688475711396	0	lncRNA	55195-1_{1..2883}	hg19_lincRNAsTranscripts_TCONS_l2_00011651 range=chr17:41453297-41466266 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011651 range=chr17:41453297-41466266 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 41453297	 41456179	-	NA	NA	NA	NA	NA	"hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40"	NA	inter
CUST_29418_PI429285431	2.751415	A	2.5446255	A	1.15411701092482	0	lncRNA	31174-1_{1..485}	n332787|AF043342|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063739_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063739_10|-1.3038000|-0.2745051	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332787|AF043342|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063739_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063739_10|-1.3038000|-0.2745051	chr6	  2838179	  2838663	+	NA	NA	NA	NA	SERPINB1	"hg19_refFlat_SERPINB1:range=chr6:2833842-28408205'pad=0,hg19_refFlat_SERPINB1:range=chr6:2833842-28408205'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20chr6:2833733-2842081"	NA	inter
LNCA_21_P0005732	0.9466845	A	0.9275077	A	1.01338108080171	0	lncRNA	TCONS_00014789	NA	NA	NA	NA	XLOC_006864	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006864), lincRNA [TCONS_00014789]"	chr8:86436411-86436470	hs|8q21.2	Agilent_HUMAN_G3V2	TCONS_00014789	TCONS_00014789	chr8	 86436411	 86436470	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6303_PI429285431	1.5737191	A	1.8624951	A	0.818596271048472	0	lncRNA	6227-1_{1..369}	"transcript_id ""ENST00000592368.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592368.1"" | genecode_v17"	chr19	  3558013	  3558381	+	ENSG00000267231.1	ENST00000592368.1	AC005786.5	AC005786.5-001	C19orf28	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-26.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20chr19:3548013-3557571"	NA	inter
CUST_22607_PI429285431	0.90749246	A	1.2282543	A	0.800646970495398	0	lncRNA	24192-1_{1..1430}	lnc-PRPF18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRPF18-1:1	chr10	 13697378	 13698807	+	lnc-PRPF18-1	lnc-PRPF18-1:1	ENSG00000239665.1	RP11-295P9.3	FRMD4A	NA	chr10:13687378-13707929	inner
CUST_49342_PI429285431	10.737902	P	10.522753	P	1.16082379683249	0	lncRNA	53155-1_{1..1369}	hg19_lincRNAsTranscripts_TCONS_l2_00022365 range=chr5:72678458-72707071 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022365 range=chr5:72678458-72707071 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 72678458	 72679826	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43085_PI429285431	4.3866563	P	5.040106	P	0.635758301351663	0	lncRNA	47292-1_{1..119}	ENST00000408289 ncrna:snRNA chromosome:GRCh37:1:28807874:28807992:1 gene:ENSG00000221216 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408289 ncrna:snRNA chromosome:GRCh37:1:28807874:28807992:1 gene:ENSG00000221216 gene_biotype:snRNA transcript_biotype:snRNA	chr1	 28807874	 28807992	+	ENSG00000221216	ENST00000408289	NA	NA	PHACTR4	NA	chr1:28797874-28817992	inner
CUST_50747_PI429285431	6.8207326	P	6.401458	P	1.33725500191432	0	lncRNA	54415-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00003843 range=chr10:134309449-134331794 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003843 range=chr10:134309449-134331794 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	134309449	134312448	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
CUST_11733_PI429285431	3.7187197	P	3.0253568	A	1.61704844385445	0	lncRNA	13313-1_{1..444}	lnc-PLS3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLS3-1:1	chrX	114959173	114959616	+	lnc-PLS3-1	lnc-PLS3-1:1	XLOC_008049	linc-AGTR2-2	NA	NA	NA	inter
CUST_10497_PI429285431	0.9262419	A	1.2276806	A	0.811442796955524	0	lncRNA	12025-1_{1..243}	lnc-MBL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBL2-1:1	chr10	 54703613	 54703855	-	lnc-MBL2-1	lnc-MBL2-1:1	XLOC_008825	linc-MBL2-2	NA	NA	NA	inter
CUST_49807_PI429285431	10.695782	P	10.072462	P	1.54041598578113	0	lncRNA	53563-1_{1..744}	hg19_lincRNAsTranscripts_TCONS_l2_00027379 range=chr7:63385226-63386655 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027379 range=chr7:63385226-63386655 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 63385226	 63385969	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27968_PI429285431	0.98011523	A	0.92129934	A	1.04161049506183	0	lncRNA	29572-1_{1..529}	n325217|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329210|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329210|-1.1076700|-0.4370033	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325217|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329210|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329210|-1.1076700|-0.4370033	chr2	104108157	104108685	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51383_PI429285431	0.90793836	A	0.90728426	A	1.00045349036648	0	lncRNA	54974-4_{9001..9736}	hg19_lincRNAsTranscripts_TCONS_l2_00009371 range=chr15:101087837-101099853 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009371 range=chr15:101087837-101099853 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	101096837	101097572	-	NA	NA	NA	NA	CERS3	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60chr15:101077837-101084925"	NA	inter
CUST_39830_PI429285431	0.9278461	A	1.4602362	A	0.69140833468474	0	lncRNA	40737-1_{1..1749}	n406423|NR_015450|lncRNA|Homosapiens||RefGeneNoncode|NR_015450||-1.0460800|-0.1953926	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406423|NR_015450|lncRNA|Homosapiens||RefGeneNoncode|NR_015450||-1.0460800|-0.1953926	chr4	 13547699	 13549447	-	NA	NA	NA	NA	NKX3-2	NA	chr4:13542454-13546114	inter
CUST_51295_PI429285431	0.9068247	A	0.910792	A	0.997253854764821	0	lncRNA	54899-1_{1..2642}	hg19_lincRNAsTranscripts_TCONS_l2_00008985 range=chr15:32808411-32819234 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008985 range=chr15:32808411-32819234 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 32808411	 32811052	-	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90"	NA	inter
CUST_51517_PI429285431	5.692951	P	5.6073146	P	1.06115573395415	0	lncRNA	55090-1_{1..1439}	hg19_lincRNAsTranscripts_TCONS_l2_00010379 range=chr16:89980365-89981911 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010379 range=chr16:89980365-89981911 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 89980365	 89981803	-	NA	NA	NA	NA	TUBB3	NA	chr16:89988417-89991911	inter
CUST_46437_PI429285431	0.9657235	A	1.572882	A	0.656488434417483	0	lncRNA	50647-1_{1..3000}	"gi|225703129|ref|NR_027409.1| Homo sapiens golgin A8 family, member A (GOLGA8A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225703129|ref|NR_027409.1| Homo sapiens golgin A8 family, member A (GOLGA8A), transcript variant 2, non-coding RNA"	Chr15	 34671269	 34674268	-	23015	NR_027409.1	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
CUST_34999_PI429285431	0.9257499	A	0.91667855	A	1.00630759026698	0	lncRNA	36412-1_{1..2835}	n341927|BC035260|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4408|NULL|-0.8543100|-0.1752323	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341927|BC035260|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4408|NULL|-0.8543100|-0.1752323	chr12	 54375292	 54378126	-	NA	NA	NA	NA	HOXC10	NA	chr12:54378946-54384063	inter
CUST_24231_PI429285431	0.91217375	A	1.7915678	A	0.543595700329338	0	lncRNA	25782-1_{1..387}	lnc-ARRB2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARRB2-2:1	chr17	  4599919	  4600305	+	lnc-ARRB2-2	lnc-ARRB2-2:1	ENSG00000235085.1	AC091153.4	PELP1	NA	chr17:4589919-4607632	inter
CUST_35061_PI429285431	6.181056	P	6.2664275	P	0.94254179621627	0	lncRNA	36471-1_{1..878}	n342009|BC034326|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4490|NULL|-0.9042360|-0.3862710	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342009|BC034326|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4490|NULL|-0.9042360|-0.3862710	chr12	107074535	107075412	-	NA	NA	NA	NA	RFX4	"hg19_refFlat_RFX4:range=chr12:106995055-1071552475'pad=0,hg19_refFlat_RFX4:range=chr12:106995055-1071552475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RFX4:range=chr12:106977099-1071552475'pad=0,hg19_refFlat_RFX4:range=chr12:106977099-1071552475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60chr12:107064535-107088478"	NA	inter
CUST_15029_PI429285431	4.397834	P	4.6863647	P	0.818735467990041	0	lncRNA	16692-1_{1..448}	lnc-C2orf40-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2orf40-5:3	chr2	107394468	107394915	+	lnc-C2orf40-5	lnc-C2orf40-5:3	XLOC_001616	linc-RGPD4-4	NA	NA	NA	inter
CUST_41216_PI429285431	1.0780448	A	0.93915343	A	1.10105868902491	0	lncRNA	42102-1_{1..76}	ENST00000585250 ncrna:miRNA chromosome:GRCh37:1:54519752:54519827:1 gene:ENSG00000264208 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585250 ncrna:miRNA chromosome:GRCh37:1:54519752:54519827:1 gene:ENSG00000264208 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 54519752	 54519827	+	ENSG00000264208	ENST00000585250	NA	NA	TCEANC2	NA	chr1:54519274-54529827	inner
CUST_33934_PI429285431	0.9702975	A	1.1893742	A	0.859115079404978	0	lncRNA	35475-1_{1..630}	n340732|AF086367|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3195|NULL|-0.7732050|-0.2555869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340732|AF086367|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3195|NULL|-0.7732050|-0.2555869	chr5	169673240	169673869	-	NA	NA	NA	NA	C5orf58	NA	chr5:169663240-169673235	inter
CUST_39737_PI429285431	12.172371	P	11.568451	P	1.51984057620797	0	lncRNA	40662-1_{1..1356}	n405708|NR_002944|lncRNA|Homosapiens||RefGeneNoncode|NR_002944||6.1923000|-0.2512992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405708|NR_002944|lncRNA|Homosapiens||RefGeneNoncode|NR_002944||6.1923000|-0.2512992	chr12	 54674532	 54675887	+	NA	NA	NA	NA	CBX5	NA	chr12:54664532-54673915	inter
CUST_41548_PI429285431	5.111039	P	5.013591	P	1.06987926584788	0	lncRNA	42832-1_{1..66}	ENST00000577693 ncrna:miRNA chromosome:GRCh37:HG14_PATCH:57472732:57472797:1 gene:ENSG00000265974 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577693 ncrna:miRNA chromosome:GRCh37:HG14_PATCH:57472732:57472797:1 gene:ENSG00000265974 gene_biotype:miRNA transcript_biotype:miRNA	chrHG14_PATCH	 57472732	 57472797	+	ENSG00000265974	ENST00000577693	NA	NA	NA	NA	NA	Unknown
CUST_10789_PI429285431	0.9169557	A	1.1221011	A	0.867451257885783	0	lncRNA	12325-1_{1..845}	lnc-MARCH11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MARCH11-1:1	chr5	 16180535	 16181379	-	lnc-MARCH11-1	lnc-MARCH11-1:1	XLOC_004742	linc-MARCH11-2	11-Mar	NA	chr5:16170535-16179897	inter
CUST_1868_PI429285431	3.9605188	P	4.111716	P	0.900502882935165	0	lncRNA	1858-1_{1..539}	"transcript_id ""ENST00000503950.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503950.1"" | genecode_v17"	chr4	124411423	124411961	+	ENSG00000249125.1	ENST00000503950.1	RP11-381N20.2	RP11-381N20.2-001	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30"	NA	inter
CUST_14279_PI429285431	5.60604	P	5.869991	P	0.83280405593359	0	lncRNA	15938-1_{1..1416}	lnc-LSM3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LSM3-1:1	chr3	 14271205	 14272620	+	lnc-LSM3-1	lnc-LSM3-1:1	XLOC_002581	linc-SLC6A6	NA	NA	NA	inter
CUST_10604_PI429285431	0.9278426	A	0.9451191	A	0.988096259570612	0	lncRNA	12132-1_{1..519}	lnc-UNC13C-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UNC13C-2:2	chr15	 53393715	 53394233	+	lnc-UNC13C-2	lnc-UNC13C-2:2	XLOC_011259	linc-UNC13C-2	NA	NA	NA	inter
CUST_649_PI429285431	1.2317629	A	1.56782	A	0.79220345591838	0	lncRNA	641-1_{1..535}	"transcript_id ""ENST00000425850.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425850.1"" | genecode_v17"	chr2	   742488	   743022	+	ENSG00000223751.1	ENST00000425850.1	AC116609.2	AC116609.2-001	NA	NA	NA	inter
CUST_15429_PI429285431	1.7792767	A	1.9019728	A	0.918469615187325	0	lncRNA	17115-1_{1..345}	lnc-ELOVL5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELOVL5-2:1	chr6	 53096586	 53096930	-	lnc-ELOVL5-2	lnc-ELOVL5-2:1	XLOC_005744	linc-GCM1	NA	NA	NA	inter
CUST_9734_PI429285431	2.4389858	A	5.630287	P	0.10947693084918	0	lncRNA	11250-1_{1..1193}	lnc-CCDC152-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC152-1:1	chr5	 42923787	 42924979	+	lnc-CCDC152-1	lnc-CCDC152-1:1	XLOC_004361	linc-ZNF131-6	NA	NA	NA	inter
CUST_46049_PI429285431	3.5865855	P	2.7808373	A	1.74805211886164	0	lncRNA	50324-2_{3001..5173}	"gi|223890226|ref|NR_026893.1| Homo sapiens POU class 6 homeobox 1 (POU6F1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223890226|ref|NR_026893.1| Homo sapiens POU class 6 homeobox 1 (POU6F1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_026893.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30"	NA	Unknown
CUST_24437_PI429285431	0.9592637	A	0.9125783	A	1.0328891270834	0	lncRNA	25990-1_{1..3000}	lnc-C11orf71-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C11orf71-1:1	chr11	114250715	114253714	-	lnc-C11orf71-1	lnc-C11orf71-1:1	ENSG00000256195.1	RP11-64D24.4	NA	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50"	NA	inter
CUST_12970_PI429285431	8.625214	P	8.860522	P	0.849503619818067	0	lncRNA	14596-1_{1..371}	lnc-RER1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RER1-1:1	chr1	  2361777	  2362147	+	lnc-RER1-1	lnc-RER1-1:1	XLOC_000021	linc-PLCH2	NA	NA	NA	inter
CUST_31645_PI429285431	0.9534591	A	0.9650364	A	0.99200733968017	0	lncRNA	33396-1_{1..567}	n338166|AF308290|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|555|NULL|-1.1965800|-0.3186962	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338166|AF308290|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|555|NULL|-1.1965800|-0.3186962	chr15	100038018	100038584	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28958_PI429285431	0.9179965	A	0.90570855	A	1.0085537337923	0	lncRNA	30678-1_{1..1073}	n326387|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099556|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099556|-1.2366900|-0.3426039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326387|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099556|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099556|-1.2366900|-0.3426039	chr1	147497339	147498411	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13280_PI429285431	3.0464103	A	3.2485523	A	0.869258997411157	0	lncRNA	14911-1_{1..252}	lnc-C7orf11-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C7orf11-7:1	chr7	 39605742	 39605993	-	lnc-C7orf11-7	lnc-C7orf11-7:1	XLOC_006414	linc-VPS41-5	C7orf36	NA	chr7:39606003-39612480	inter
CUST_6262_PI429285431	0.91771847	A	0.91382605	A	1.00270166287987	0	lncRNA	6187-1_{1..479}	"transcript_id ""ENST00000581750.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581750.1"" | genecode_v17"	chr18	 73921465	 73921943	+	ENSG00000264260.1	ENST00000581750.1	RP11-94B19.1	RP11-94B19.1-001	NA	NA	NA	inter
CUST_41393_PI429285431	8.580536	P	8.379022	P	1.14990446032227	0	lncRNA	42503-1_{1..83}	ENST00000408863 ncrna:miRNA chromosome:GRCh37:19:22785508:22785590:1 gene:ENSG00000221790 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408863 ncrna:miRNA chromosome:GRCh37:19:22785508:22785590:1 gene:ENSG00000221790 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 22785508	 22785590	+	ENSG00000221790	ENST00000408863	NA	NA	NA	NA	NA	inter
CUST_22753_PI429285431	1.1355793	A	1.3707297	A	0.849596424658714	0	lncRNA	24336-1_{1..357}	lnc-KAT8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KAT8-1:1	chr16	 31143014	 31143370	+	lnc-KAT8-1	lnc-KAT8-1:1	ENSG00000261385.1	RP11-388M20.2	KAT8	NA	chr16:31133014-31142714	inner
CUST_15437_PI429285431	1.7505512	A	2.824377	A	0.475057549386822	0	lncRNA	17125-1_{1..373}	lnc-C20orf202-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf202-1:1	chr20	  1169816	  1170188	+	lnc-C20orf202-1	lnc-C20orf202-1:1	XLOC_013431	linc-C20orf202	C20orf46	NA	chr20:1161215-1165117	inter
CUST_48376_PI429285431	0.9190391	A	1.4891852	A	0.673548575520924	0	lncRNA	52229-1_{1..278}	hg19_lincRNAsTranscripts_TCONS_l2_00001396 range=chr1:95235818-95285737 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001396 range=chr1:95235818-95285737 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 95235818	 95236095	-	NA	NA	NA	NA	SLC44A3	NA	chr1:95285901-95295737	inter
CUST_41885_PI429285431	7.219725	P	7.024681	P	1.14475907347335	0	lncRNA	43572-1_{1..97}	ENST00000384995 ncrna:miRNA chromosome:GRCh37:5:54466474:54466570:-1 gene:ENSG00000207728 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384995 ncrna:miRNA chromosome:GRCh37:5:54466474:54466570:-1 gene:ENSG00000207728 gene_biotype:miRNA transcript_biotype:miRNA	chr5	 54466474	 54466570	-	ENSG00000207728	ENST00000384995	NA	NA	CDC20B	NA	chr5:54456474-54469005	inner
CUST_27855_PI429285431	0.9263324	A	0.9192677	A	1.0049088861828	0	lncRNA	29448-1_{1..561}	n325091|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322442|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322442|-0.5249390|-0.2767852	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325091|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322442|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322442|-0.5249390|-0.2767852	chr2	242638518	242639078	-	NA	NA	NA	NA	ING5	"hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90chr2:242641456-242668896"	NA	inner
CUST_4589_PI429285431	0.91610974	A	0.90499735	A	1.00773226252931	0	lncRNA	4538-1_{1..385}	"transcript_id ""ENST00000442716.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442716.1"" | genecode_v17"	chr13	 34185104	 34185488	+	ENSG00000234535.1	ENST00000442716.1	RP11-37L2.1	RP11-37L2.1-001	NA	NA	NA	inner
CUST_3419_PI429285431	2.6645622	A	2.4832678	A	1.13390077583239	0	lncRNA	3391-1_{1..1549}	"transcript_id ""ENST00000450704.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450704.1"" | genecode_v17"	chr9	 46843638	 46845186	+	ENSG00000226007.2	ENST00000450704.1	RP11-211N8.2	RP11-211N8.2-002	NA	NA	NA	inter
CUST_43004_PI429285431	7.0085254	P	7.2211685	P	0.862954799546391	0	lncRNA	46173-1_{1..95}	ENST00000386747 ncrna:snoRNA chromosome:GRCh37:22:39711218:39711312:-1 gene:ENSG00000209482 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000386747 ncrna:snoRNA chromosome:GRCh37:22:39711218:39711312:-1 gene:ENSG00000209482 gene_biotype:snoRNA transcript_biotype:snoRNA	chr22	 39711218	 39711312	-	ENSG00000209482	ENST00000386747	NA	NA	RPL3	NA	chr22:39708887-39715670	inner
CUST_4649_PI429285431	0.92957205	A	0.92524016	A	1.00300714977076	0	lncRNA	4595-1_{1..1094}	"transcript_id ""ENST00000601480.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601480.1"" | genecode_v17"	chr13	 75128102	 75129195	+	ENSG00000236678.2	ENST00000601480.1	LINC00347	LINC00347-008	NA	NA	NA	inter
CUST_21102_PI429285431	7.024791	P	6.976414	P	1.0341009285655	0	lncRNA	22727-1_{1..1441}	lnc-MNS1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MNS1-3:2	chr15	 57209738	 57211178	-	lnc-MNS1-3	lnc-MNS1-3:2	ENSG00000259484.1	RP11-323F24.1	TCF12	NA	chr15:57210833-57220691	inter
CUST_11040_PI429285431	3.8462193	P	4.1850486	P	0.790682664819306	0	lncRNA	12586-1_{1..2443}	lnc-NDUFV2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDUFV2-1:3	chr18	  8996488	  8998930	+	lnc-NDUFV2-1	lnc-NDUFV2-1:3	XLOC_012622	linc-NDUFV2	NA	NA	NA	inter
CUST_39972_PI429285431	1.4310123	A	1.8435816	A	0.751284217250887	0	lncRNA	40843-1_{1..571}	n407046|NR_024541_4|lncRNA|Homosapiens||RefGeneNoncode|NR_024541_4||1.9045900|-0.2984807	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407046|NR_024541_4|lncRNA|Homosapiens||RefGeneNoncode|NR_024541_4||1.9045900|-0.2984807	chr6	  3022645	  3023215	-	NA	NA	NA	NA	NQO2	"hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70chr6:3012645-3019994"	NA	inter
CUST_18817_PI429285431	7.0380177	P	7.3946543	P	0.780983189443303	0	lncRNA	20511-1_{1..875}	lnc-CYP11B2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CYP11B2-1:5	chr8	144093902	144094776	-	lnc-CYP11B2-1	lnc-CYP11B2-1:5	ENSG00000247317	RP11-273G15.2	LY6E	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-24.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60chr8:144083902-144103827"	NA	inter
CUST_45464_PI429285431	11.194103	P	11.358919	P	0.892042282418436	0	lncRNA	49879-1_{1..1545}	"gi|345525415|ref|NR_045110.1| Homo sapiens EGF-like-domain, multiple 7 (EGFL7), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|345525415|ref|NR_045110.1| Homo sapiens EGF-like-domain, multiple 7 (EGFL7), transcript variant 3, non-coding RNA"	Chr9	139557379	139558923	+	51162	NR_045110.1	NA	NA	NA	NA	NA	inter
CUST_18055_PI429285431	4.925797	P	4.7383747	P	1.13872730405845	0	lncRNA	19790-1_{1..314}	lnc-AL590822.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL590822.1-1:2	chr1	  2143988	  2144301	-	lnc-AL590822.1-1	lnc-AL590822.1-1:2	XLOC_000677	linc-C1orf86	C1orf86	NA	chr1:2133988-2139172	inter
LNCA_21_P0009305	8.316358	P	8.323492	P	0.995067293963756	0	lncRNA	TCONS_00025586	NA	NA	NA	NA	XLOC_012416	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012416), lincRNA [TCONS_00025586]"	chr17:19398241-19390374	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_00025586	TCONS_00025586	chr17	 19390374	 19398241	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27862_PI429285431	5.7250185	P	6.1846786	P	0.72715755732923	0	lncRNA	29455-1_{1..592}	n325098|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328239|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328239|-0.9151110|-0.2313746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325098|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328239|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328239|-0.9151110|-0.2313746	chr2	239362038	239362629	-	NA	NA	NA	NA	ASB1	NA	chr2:239352038-239360891	inter
CUST_18767_PI429285431	1.523076	A	0.97276086	A	1.46440554341836	0	lncRNA	20463-1_{1..705}	lnc-SPRYD7-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPRYD7-1:9	chr13	 50655959	 50656663	-	lnc-SPRYD7-1	lnc-SPRYD7-1:9	ENSG00000231607	DLEU2	NA	NA	NA	inter
CUST_36091_PI429285431	8.056901	P	7.914487	P	1.10375043006107	0	lncRNA	37392-2_{3001..5132}	n344677|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_226|NULL|-1.2355500|-0.2200003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n344677|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_226|NULL|-1.2355500|-0.2200003	chr8	128809799	128811930	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60"	NA	inter
CUST_23395_PI429285431	0.9218173	A	1.4206511	A	0.707678600793554	0	lncRNA	24963-1_{1..831}	lnc-C2orf69-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf69-4:1	chr2	200193512	200194342	+	lnc-C2orf69-4	lnc-C2orf69-4:1	ENSG00000257045.1	RP11-486F17.1	SATB2	"hg19_refFlat_SATB2:range=chr2:200136934-2003207605'pad=0,hg19_refFlat_SATB2:range=chr2:200136934-2003207605'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90chr2:200183512-200204085"	NA	inner
CUST_42736_PI429285431	7.28549	P	7.3875117	P	0.931726414828612	0	lncRNA	45687-1_{1..131}	ENST00000362493 ncrna:snoRNA chromosome:GRCh37:3:183171602:183171732:1 gene:ENSG00000199363 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362493 ncrna:snoRNA chromosome:GRCh37:3:183171602:183171732:1 gene:ENSG00000199363 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	183171602	183171732	+	ENSG00000199363	ENST00000362493	NA	NA	NA	NA	NA	inter
CUST_34357_PI429285431	0.9897975	A	1.1235938	A	0.911429960067857	0	lncRNA	35845-1_{1..2336}	n341226|AK023033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3694|NULL|-1.1936100|-0.3699893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341226|AK023033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3694|NULL|-1.1936100|-0.3699893	chr7	 39019494	 39021829	-	NA	NA	NA	NA	POU6F2	NA	chr7:39017609-39063168	inner
CUST_37890_PI429285431	4.264021	P	4.763972	P	0.707130797918915	0	lncRNA	38980-1_{1..391}	n346425|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1975|NULL|-1.3405100|-0.2202874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346425|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1975|NULL|-1.3405100|-0.2202874	chr12	  9436267	  9436657	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41018_PI429285431	4.6731	P	4.8859205	P	0.862848693428816	0	lncRNA	41678-1_{1..2429}	n411624|NR_040090_4|lncRNA|Homosapiens||RefGeneNoncode|NR_040090_4||-0.0594529|-0.1983676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411624|NR_040090_4|lncRNA|Homosapiens||RefGeneNoncode|NR_040090_4||-0.0594529|-0.1983676	chr6	  3306122	  3308550	+	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-59.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM47E:range=chr4:77138761-772046115'pad=0,hg19_refFlat_FAM47E:range=chr4:77138761-772046115'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90chr6:3296122-3319396"	NA	inner
CUST_42540_PI429285431	0.9093876	A	1.1427505	A	0.850649727512773	0	lncRNA	45344-1_{1..73}	ENST00000516629 ncrna:snoRNA chromosome:GRCh37:10:12457927:12457999:1 gene:ENSG00000252438 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516629 ncrna:snoRNA chromosome:GRCh37:10:12457927:12457999:1 gene:ENSG00000252438 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	 12457927	 12457999	+	ENSG00000252438	ENST00000516629	NA	NA	CAMK1D	NA	chr10:12447927-12467999	inner
CUST_48951_PI429285431	3.6647177	P	3.8368137	P	0.887552275686159	0	lncRNA	52793-1_{1..373}	hg19_lincRNAsTranscripts_TCONS_l2_00019022 range=chr3:181584138-181584824 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019022 range=chr3:181584138-181584824 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	181584138	181584510	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZCCHC10:range=chr5:132334275-1323622295'pad=0,hg19_refFlat_ZCCHC10:range=chr5:132334275-1323622295'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90"	NA	inter
CUST_22451_PI429285431	0.9975624	A	0.9865365	A	1.00767185048909	0	lncRNA	24038-1_{1..396}	lnc-NOC3L-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NOC3L-3:4	chr10	 95868115	 95868510	-	lnc-NOC3L-3	lnc-NOC3L-3:4	ENSG00000232913.1	RP11-429H9.4	PLCE1	NA	chr10:95858115-95878232	inner
CUST_1700_PI429285431	1.6747419	A	0.9204724	A	1.68677728640768	0	lncRNA	1684-1_{1..1263}	"transcript_id ""ENST00000501050.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000501050.1"" | genecode_v17"	chr4	 13547700	 13548962	-	ENSG00000246095.2	ENST00000501050.1	AC006445.8	AC006445.8-001	NKX3-2	NA	chr4:13542454-13546114	inter
CUST_13834_PI429285431	0.9491157	A	0.91403145	A	1.02461665649057	0	lncRNA	15477-1_{1..763}	lnc-RP11-295D22.1.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-295D22.1.1-5:1	chr9	122828820	122829582	+	lnc-RP11-295D22.1.1-5	lnc-RP11-295D22.1.1-5:1	XLOC_007546	linc-CEP110-5	NA	NA	NA	inter
CUST_47593_PI429285431	0.9207935	A	0.92082745	A	0.999976467930103	0	lncRNA	51596-1_{1..1099}	"gi|262359958|ref|NR_030722.1| Homo sapiens family with sequence similarity 104, member B (FAM104B), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|262359958|ref|NR_030722.1| Homo sapiens family with sequence similarity 104, member B (FAM104B), transcript variant 8, non-coding RNA"	ChrX	 55169535	 55170633	-	90736	NR_030722.1	NA	NA	NA	NA	NA	inter
CUST_41423_PI429285431	1.422831	A	2.2659104	A	0.557452428631197	0	lncRNA	42573-1_{1..66}	ENST00000583256 ncrna:miRNA chromosome:GRCh37:16:34442877:34442942:1 gene:ENSG00000264479 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583256 ncrna:miRNA chromosome:GRCh37:16:34442877:34442942:1 gene:ENSG00000264479 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 34442877	 34442942	+	ENSG00000264479	ENST00000583256	NA	NA	NA	NA	NA	inter
CUST_23192_PI429285431	2.5733953	A	2.4865377	A	1.06205435214054	0	lncRNA	24764-1_{1..326}	lnc-TAF9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TAF9-1:2	chr5	 68781310	 68781635	-	lnc-TAF9-1	lnc-TAF9-1:2	ENSG00000249295.1	RP11-241G9.3	OCLN	NA	chr5:68788119-68791439	inter
CUST_14412_PI429285431	0.9109021	A	0.9090604	A	1.00127738432368	0	lncRNA	16072-1_{1..1062}	lnc-ETS2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ETS2-2:2	chr21	 40230001	 40231062	+	lnc-ETS2-2	lnc-ETS2-2:2	XLOC_013939	linc-WRB-5	NA	NA	NA	inter
CUST_3593_PI429285431	0.9157811	A	1.5399728	A	0.648783169825318	0	lncRNA	3563-1_{1..536}	"transcript_id ""ENST00000413339.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413339.1"" | genecode_v17"	chr10	  3876142	  3876677	+	ENSG00000230573.1	ENST00000413339.1	RP11-464C19.2	RP11-464C19.2-001	NA	NA	NA	inter
CUST_20911_PI429285431	1.6892916	A	0.9044041	A	1.72295795954714	0	lncRNA	22542-1_{1..2355}	lnc-B4GALNT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-B4GALNT1-2:1	chr12	 58011544	 58013898	-	lnc-B4GALNT1-2	lnc-B4GALNT1-2:1	ENSG00000224713.1	AC025165.8	DTX3	"hg19_refFlat_ARHGEF25:range=chr12:58004000-580106775'pad=0,hg19_refFlat_ARHGEF25:range=chr12:58004000-580106775'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.00;hg19_refFlat_ARHGEF25:range=chr12:58005678-580106775'pad=0,hg19_refFlat_ARHGEF25:range=chr12:58005678-580106775'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.00chr12:58001544-58003583"	NA	inter
CUST_34978_PI429285431	1.3209622	A	1.2209079	A	1.07181380258917	0	lncRNA	36394-2_{3001..3269}	n341902|AK023464|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4383|NULL|-1.1912200|-0.3390038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341902|AK023464|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4383|NULL|-1.1912200|-0.3390038	chr12	 46785638	 46785906	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25222_PI429285431	0.9235742	A	0.9077135	A	1.01105445336871	0	lncRNA	26753-1_{1..578}	lnc-AP001496.1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP001496.1-6:1	chr18	  5480895	  5481472	+	lnc-AP001496.1-6	lnc-AP001496.1-6:1	ENSG00000265316.1	RP11-286N3.1	EPB41L3	NA	chr18:5470895-5490974	inner
CUST_11344_PI429285431	0.90427554	A	0.89987737	A	1.00305323077826	0	lncRNA	12906-2_{3001..4347}	lnc-MANEA-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MANEA-3:4	chr6	 94457425	 94458771	+	lnc-MANEA-3	lnc-MANEA-3:4	XLOC_005392	linc-MANEA-3	NA	NA	NA	inter
CUST_12834_PI429285431	0.91916	A	0.9169476	A	1.00153469526355	0	lncRNA	14461-1_{1..207}	lnc-UNC5D-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-UNC5D-3:2	chr8	 34650276	 34650482	+	lnc-UNC5D-3	lnc-UNC5D-3:2	XLOC_006770	linc-UNC5D-2	NA	NA	NA	inter
CUST_13283_PI429285431	1.3617035	A	1.4401801	A	0.947057154847204	0	lncRNA	14915-1_{1..1228}	lnc-GADD45G-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-GADD45G-5:2	chr9	 92767231	 92768458	+	lnc-GADD45G-5	lnc-GADD45G-5:2	XLOC_007451	linc-SYK-2	NA	NA	NA	inter
CUST_9741_PI429285431	1.254447	A	0.89113617	A	1.28637460419183	0	lncRNA	11258-1_{1..425}	lnc-FRG1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRG1-4:4	chr4	190497379	190497803	+	lnc-FRG1-4	lnc-FRG1-4:4	XLOC_003840	linc-FRG1-4	NA	NA	NA	inter
CUST_223_PI429201921	9.266216	P	9.270714	P	0.996887079198355	0	lncRNA	175-1_{1..3000}	TC17002137.hg.1	 TCONS_l2_00010643-XLOC_l2_005719 // Broad TUCP // linc-NLK-2 chr17:+:26075314-26081142 // chr17 // 100 // 100 // 0 // --- // 0///TCONS_l2_00010642-XLOC_l2_005719 // Broad TUCP // linc-NLK-2 chr17:+:26075313-26081148 // chr17 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr17:+:26075313-26081148	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00010642-XLOC_l2_005719	linc-NLK-2	chr17	 26075313	 26081148	+	NA	NA	NA	NA	CNR2	NA	chr1:24223601-24239817	Unknown
CUST_47855_PI429285431	2.0736184	A	2.6205552	A	0.684471890482062	0	lncRNA	51760-1_{1..3000}	"gi|410171123|ref|XR_171156.1| PREDICTED: Homo sapiens rootletin-like (LOC101060339), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171123|ref|XR_171156.1| PREDICTED: Homo sapiens rootletin-like (LOC101060339), misc_RNA"	NA	NA	NA	NA	NA	XR_171156.1	NA	NA	NA	NA	NA	Unknown
CUST_20087_PI429285431	2.3343122	A	2.7673614	A	0.740694638787733	0	lncRNA	21735-1_{1..563}	lnc-KIF20B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIF20B-1:1	chr10	 91410310	 91410872	+	lnc-KIF20B-1	lnc-KIF20B-1:1	ENSG00000232936.1	RP11-80H5.2	PANK1	NA	chr10:91400310-91405329	inter
CUST_35886_PI429285431	1.6567515	A	1.7935188	A	0.909554946952319	0	lncRNA	37273-2_{3001..5086}	n344548|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_96|NULL|-1.5259900|-0.3527759	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344548|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_96|NULL|-1.5259900|-0.3527759	chr5	127295490	127297575	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40"	NA	inter
CUST_43216_PI429285431	1.5074154	A	0.91034317	A	1.51264372744059	0	lncRNA	48030-1_{1..553}	ENST00000602988 havana:sense_intronic chromosome:GRCh37:12:124450624:124451176:-1 gene:ENSG00000269997 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602988 havana:sense_intronic chromosome:GRCh37:12:124450624:124451176:-1 gene:ENSG00000269997 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr12	124450624	124451176	-	ENSG00000269997	ENST00000602988	NA	NA	ZNF664-FAM101A	NA	chr12:124457762-124461176	inner
CUST_3782_PI429285431	0.94007283	A	0.91681945	A	1.01624861069127	0	lncRNA	3750-1_{1..1013}	"transcript_id ""ENST00000447860.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447860.1"" | genecode_v17"	chr10	106234697	106235709	-	ENSG00000225768.1	ENST00000447860.1	RP11-127O4.3	RP11-127O4.3-001	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40"	NA	inter
CUST_11586_PI429285431	4.192534	P	4.4836783	P	0.817253581766742	0	lncRNA	13165-1_{1..1184}	lnc-IGFBP5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGFBP5-1:1	chr2	217471585	217472768	-	lnc-IGFBP5-1	lnc-IGFBP5-1:1	XLOC_002484	linc-MARCH4	IGFBP2	NA	chr2:217474994-217481661	inter
LNCA_21_P0008716	0.9249188	A	0.9105609	A	1.01000182512275	0	lncRNA	TCONS_00023602	NA	NA	NA	NA	XLOC_011413	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011413), lincRNA [TCONS_00023602]"	chr15:31514746-31514687	hs|15q13.3	Agilent_HUMAN_G3V2	TCONS_00023602	TCONS_00023602	chr15	 31514687	 31514746	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45531_PI429285431	1.0276473	A	1.1079369	A	0.945867758502518	0	lncRNA	49939-1_{1..1117}	"gi|223468636|ref|NR_026793.1| Homo sapiens long intergenic non-protein coding RNA 264 (LINC00264), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223468636|ref|NR_026793.1| Homo sapiens long intergenic non-protein coding RNA 264 (LINC00264), non-coding RNA"	Chr10	 26878794	 26879910	+	645528	NR_026793.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90"	NA	inter
CUST_36289_PI429285431	0.9005275	A	0.9034349	A	0.997986773152448	0	lncRNA	37521-1_{1..1038}	n344816|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_365|NULL|-1.2878900|-0.2253060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344816|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_365|NULL|-1.2878900|-0.2253060	chr16	 72463031	 72464068	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7359_PI429285431	3.9864147	P	4.8604984	P	0.54560028383455	0	lncRNA	9005-1_{1..292}	lnc-GRPEL1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRPEL1-1:5	chr4	  7104995	  7105286	-	lnc-GRPEL1-1	lnc-GRPEL1-1:5	ENSG00000245562	XLOC_003872	NA	NA	NA	inter
CUST_40968_PI429285431	0.9226803	A	0.92583644	A	0.997814721662521	0	lncRNA	41640-2_{3001..3793}	n411033|NR_038856|lncRNA|Homosapiens||RefGeneNoncode|NR_038856||-0.8731220|-0.2216432	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n411033|NR_038856|lncRNA|Homosapiens||RefGeneNoncode|NR_038856||-0.8731220|-0.2216432	chr1	234862788	234863580	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21954_PI429285431	1.0395887	A	0.8947046	A	1.10564182717785	0	lncRNA	23562-1_{1..641}	lnc-SBDS-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SBDS-7:1	chr7	 67753042	 67753682	-	lnc-SBDS-7	lnc-SBDS-7:1	ENSG00000226829.1	RP5-945F2.3	NA	NA	NA	inter
CUST_8670_PI429285431	0.91484517	A	1.0585189	A	0.905211156072831	0	lncRNA	10221-1_{1..3000}	lnc-MAGI2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAGI2-1:1	chr7	 79093975	 79096974	-	lnc-MAGI2-1	lnc-MAGI2-1:1	ENSG00000249657	XLOC_006507	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.04;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_43678_PI429285431	1.4277966	A	1.1924657	A	1.1771767063342	0	lncRNA	48431-1_{1..2673}	"gi|315013530|ref|NR_037642.1| Homo sapiens uncharacterized LOC100527964 (LOC100527964), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|315013530|ref|NR_037642.1| Homo sapiens uncharacterized LOC100527964 (LOC100527964), non-coding RNA"	Chr1	180238798	180241470	-	100527964	NR_037642.1	NA	NA	NA	"hg19_refFlat_LHX4:range=chr1:180199665-1802437145'pad=0,hg19_refFlat_LHX4:range=chr1:180199665-1802437145'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.20"	NA	inter
CUST_33395_PI429285431	0.9013953	A	0.8962873	A	1.00354687111153	0	lncRNA	34973-1_{1..690}	n340116|BC021189|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2575|NULL|-0.8997840|-0.3216809	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340116|BC021189|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2575|NULL|-0.8997840|-0.3216809	chr10	 98862512	 98863201	+	NA	NA	NA	NA	SLIT1	NA	chr10:98852512-98873487	inner
CUST_20630_PI429285431	4.5062294	P	5.1728745	P	0.62996994221846	0	lncRNA	22269-1_{1..1715}	lnc-C14orf45-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C14orf45-1:1	chr14	 74549491	 74551205	+	lnc-C14orf45-1	lnc-C14orf45-1:1	ENSG00000259114.1	AC005484.5	LIN52	NA	chr14:74551656-74559566	inner
CUST_18993_PI429285431	2.9059002	A	3.1297534	A	0.856275409566976	0	lncRNA	20684-1_{1..439}	lnc-NOTCH2NL-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NOTCH2NL-1:2	chr1	145100692	145101130	+	lnc-NOTCH2NL-1	lnc-NOTCH2NL-1:2	ENSG00000223380	SEC22B	SEC22B	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr1:145096407-145110984"	NA	inner
CUST_8174_PI429285431	3.8069563	P	3.001235	A	1.74801952558151	0	lncRNA	9775-1_{1..1201}	lnc-ENDOD1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ENDOD1-1:8	chr11	 94965754	 94966954	+	lnc-ENDOD1-1	lnc-ENDOD1-1:8	ENSG00000245552	RP11-712B9.2	SESN3	NA	chr11:94955754-94964246	inter
CUST_17860_PI429285431	10.454165	P	11.011971	P	0.679334486616879	0	lncRNA	19596-1_{1..2081}	lnc-LSG1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LSG1-2:1	chr3	194567427	194569507	-	lnc-LSG1-2	lnc-LSG1-2:1	XLOC_003387	linc-LSG1-2	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_16247_PI429285431	1.1843035	A	0.96807164	A	1.16169541660178	0	lncRNA	17952-1_{1..625}	lnc-SEPT9-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEPT9-3:6	chr17	 75558226	 75558850	+	lnc-SEPT9-3	lnc-SEPT9-3:6	XLOC_012317	linc-TNRC6C-3	LOC100652922	NA	chr17:75548387-75550976	inter
CUST_45016_PI429285431	7.1162586	P	7.5612793	P	0.734573776791276	0	lncRNA	49518-1_{1..1657}	"gi|299523043|ref|NR_033811.1| Homo sapiens cytochrome P450, family 3, subfamily A, polypeptide 5 (CYP3A5), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299523043|ref|NR_033811.1| Homo sapiens cytochrome P450, family 3, subfamily A, polypeptide 5 (CYP3A5), transcript variant 7, non-coding RNA"	Chr7	 99257842	 99259498	-	1577	NR_033811.1	NA	NA	NA	NA	NA	inter
CUST_6428_PI429285431	8.216312	P	8.241085	P	0.982975252039065	0	lncRNA	6368-1_{1..487}	"transcript_id ""ENST00000587850.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587850.1"" | genecode_v17"	chr19	 29383838	 29384324	+	ENSG00000267683.1	ENST00000587850.1	AC008991.1	AC008991.1-001	NA	NA	NA	inter
CUST_48263_PI429285431	1.2997366	A	1.0430089	A	1.194765678748	0	lncRNA	52126-1_{1..303}	hg19_lincRNAsTranscripts_TCONS_l2_00000054 range=chr1:2509302-2515741 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000054 range=chr1:2509302-2515741 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	  2509302	  2509604	+	NA	NA	NA	NA	MMEL1	NA	chr1:2522081-2525741	inter
CUST_4984_PI429285431	3.962343	P	4.363383	P	0.757312160495849	0	lncRNA	4928-1_{1..1851}	"transcript_id ""ENST00000554025.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554025.1"" | genecode_v17"	chr14	 99391474	 99393324	-	ENSG00000259119.1	ENST00000554025.1	RP11-1127D7.1	RP11-1127D7.1-001	NA	NA	NA	inter
CUST_51199_PI429285431	1.3956122	A	1.067833	A	1.25507989049949	0	lncRNA	54818-1_{1..2545}	hg19_lincRNAsTranscripts_TCONS_l2_00008939 range=chr15:23189980-23208162 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008939 range=chr15:23189980-23208162 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 23189980	 23192524	-	NA	NA	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60"	NA	inter
CUST_26444_PI429285431	0.8999315	A	0.8973238	A	1.00180915445152	0	lncRNA	27952-1_{1..527}	lnc-ANKRD32-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD32-2:1	chr5	 94316528	 94317054	+	lnc-ANKRD32-2	lnc-ANKRD32-2:1	ENSG00000249545.1	CTC-558O19.1	MCTP1	NA	chr5:94306528-94326597	inner
CUST_38746_PI429285431	0.9085948	A	0.9034586	A	1.00356648738355	0	lncRNA	39737-1_{1..2016}	n384282|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003drn.2||-1.0013800|-0.2990705	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384282|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003drn.2||-1.0013800|-0.2990705	chr3	 94657106	 94659121	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5842_PI429285431	4.9419804	P	5.309205	P	0.775272501864252	0	lncRNA	5771-1_{1..306}	"transcript_id ""ENST00000578478.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578478.1"" | genecode_v17"	chr17	 38084097	 38084402	+	ENSG00000264968.1	ENST00000578478.1	RP11-387H17.4	RP11-387H17.4-002	ORMDL3	NA	chr17:38077296-38083884	inter
CUST_47165_PI429285431	0.9257002	A	0.92022127	A	1.00380492530062	0	lncRNA	51243-1_{1..1398}	"gi|84872083|ref|NR_002798.1| Homo sapiens napsin B aspartic peptidase, pseudogene (NAPSB), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|84872083|ref|NR_002798.1| Homo sapiens napsin B aspartic peptidase, pseudogene (NAPSB), non-coding RNA"	NA	NA	NA	NA	NA	NR_002798.1	NA	NA	NA	NA	NA	Unknown
CUST_8746_PI429285431	1.8195467	A	2.2157788	A	0.759840175689449	0	lncRNA	10288-2_{3001..4176}	lnc-RAD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAD1-1:1	chr5	 34907506	 34908681	-	lnc-RAD1-1	lnc-RAD1-1:1	ENSG00000251069	ENST00000507140	TTC23L	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr5:34894506-34899567"	NA	inter
CUST_3300_PI429285431	1.4339036	A	0.9259099	A	1.42207120063446	0	lncRNA	3278-1_{1..415}	"transcript_id ""ENST00000520171.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520171.1"" | genecode_v17"	chr8	127486434	127486848	+	ENSG00000253427.1	ENST00000520171.1	RP11-103H7.1	RP11-103H7.1-001	NA	NA	NA	inter
CUST_49004_PI429285431	2.0465536	A	1.5355941	A	1.42499761039771	0	lncRNA	52835-2_{3001..4114}	hg19_lincRNAsTranscripts_TCONS_l2_00019725 range=chr3:197339462-197354754 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019725 range=chr3:197339462-197354754 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	197342462	197343575	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32390_PI429285431	4.863795	P	3.3510065	P	2.85361063965592	0	lncRNA	34067-1_{1..363}	n338981|M31164|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1409|NULL|-1.2512300|-0.4040294	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338981|M31164|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1409|NULL|-1.2512300|-0.4040294	chr2	152236007	152236369	-	NA	NA	NA	NA	TNFAIP6	NA	chr2:152226007-152236562	inner
CUST_8667_PI429285431	3.8617668	P	4.0908813	P	0.853158384209411	0	lncRNA	10218-1_{1..1737}	lnc-HPCAL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-HPCAL1-1:1	chr2	 10590562	 10592298	+	lnc-HPCAL1-1	lnc-HPCAL1-1:1	ENSG00000257135	RP11-320M2.1	ODC1	"hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60chr2:10580562-10588453"	NA	inter
CUST_30573_PI429285431	3.8245733	P	4.386203	P	0.677536371313464	0	lncRNA	32355-1_{1..613}	n335787|X51524|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321661|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321661|-1.1230400|-0.2030811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335787|X51524|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321661|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321661|-1.1230400|-0.2030811	chr6	119312343	119312955	-	NA	NA	NA	NA	FAM184A	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.44;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70chr6:119302343-119322956"	NA	inner
CUST_5777_PI429285431	5.3788385	P	5.368419	P	1.00724839037401	0	lncRNA	5699-2_{3001..3703}	"transcript_id ""ENST00000577309.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577309.1"" | genecode_v17"	chr17	 21362825	 21363527	-	ENSG00000265043.1	ENST00000577309.1	RP11-728E14.3	RP11-728E14.3-001	NA	"hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.60;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50"	NA	inter
CUST_8017_PI429285431	0.9123606	A	0.98811084	A	0.948848566003519	0	lncRNA	9629-1_{1..2672}	lnc-BTNL8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BTNL8-2:1	chr5	180277908	180280579	+	lnc-BTNL8-2	lnc-BTNL8-2:1	ENSG00000245787	ENST00000499434	ZFP62	"hg19_refFlat_ZFP62:range=chr5:180275792-1802882195'pad=0,hg19_refFlat_ZFP62:range=chr5:180275792-1802882195'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00;hg19_refFlat_ZFP62:range=chr5:180275792-1802783955'pad=0,hg19_refFlat_ZFP62:range=chr5:180275792-1802783955'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00chr5:180274611-180288120"	NA	inner
CUST_19805_PI429285431	1.3320758	A	1.7370476	A	0.75525105534107	0	lncRNA	21462-1_{1..419}	lnc-MDGA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MDGA1-1:1	chr6	 37786922	 37787340	-	lnc-MDGA1-1	lnc-MDGA1-1:1	ENSG00000225945.1	RP3-441A12.1	ZFAND3	NA	chr6:37787307-37796994	inter
CUST_7984_PI429285431	5.4278717	P	5.7720776	P	0.787741452350459	0	lncRNA	9595-1_{1..1325}	lnc-CYP4F22-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYP4F22-1:1	chr19	 15526732	 15528056	+	lnc-CYP4F22-1	lnc-CYP4F22-1:1	ENSG00000247638	ENST00000421670	WIZ	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50chr19:15532318-15537617"	NA	inner
LNCA_21_P0006377	0.96364754	A	0.9306217	A	1.02315579523513	0	lncRNA	TCONS_00016749	NA	NA	NA	NA	XLOC_007662	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007662), lincRNA [TCONS_00016749]"	chr9:29212926-29185827	hs|9p21.1	Agilent_HUMAN_G3V2	TCONS_00016749	TCONS_00016749	chr9	 29185827	 29212926	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41849_PI429285431	0.9262026	A	0.92592573	A	1.0001919300761	0	lncRNA	43494-1_{1..117}	ENST00000584818 ncrna:miRNA chromosome:GRCh37:12:112475403:112475519:-1 gene:ENSG00000266370 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584818 ncrna:miRNA chromosome:GRCh37:12:112475403:112475519:-1 gene:ENSG00000266370 gene_biotype:miRNA transcript_biotype:miRNA	chr12	112475403	112475519	-	ENSG00000266370	ENST00000584818	NA	NA	NAA25	NA	chr12:112465403-112485519	inner
CUST_26533_PI429285431	1.1750156	A	1.752127	A	0.670304535157373	0	lncRNA	28040-1_{1..632}	lnc-DTWD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DTWD1-2:1	chr15	 50145853	 50146484	+	lnc-DTWD1-2	lnc-DTWD1-2:1	ENSG00000259739.1	CTD-2647E9.2	ATP8B4	NA	chr15:50150435-50156191	inter
CUST_12452_PI429285431	2.934743	A	3.6356304	P	0.615193685367814	0	lncRNA	14064-1_{1..653}	lnc-GRXCR1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRXCR1-4:3	chr4	 43347395	 43348047	+	lnc-GRXCR1-4	lnc-GRXCR1-4:3	XLOC_003526	linc-GUF1-3	NA	NA	NA	inter
LNCA_19_P00807783	1.4789544	A	2.3317585	A	0.553707473709351	0	lncRNA	XR_108925	XR_108925	XR_108925	NA	NA	LOC100506189	NA	ENST00000437881	THC2652445	NA	"PREDICTED: Homo sapiens hypothetical LOC100506189 (LOC100506189), miscRNA [XR_108925]"	chr9:6066526-6066585	hs|9p24.1	Agilent_HUMAN_G3V2	XR_108925	XR_108925	chr9	  6066526	  6066585	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26719_PI429285431	2.966074	A	3.4938993	P	0.693599469391069	0	lncRNA	28215-1_{1..227}	n3287|AJ508601|snoRNA|Homosapiens|5SN4snoRNA|NONCODEv2.0|n3287|NULL|-1.5906100|-0.4508841	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n3287|AJ508601|snoRNA|Homosapiens|5SN4snoRNA|NONCODEv2.0|n3287|NULL|-1.5906100|-0.4508841	chr14	 67726937	 67727163	-	NA	NA	NA	NA	MPP5	NA	chr14:67716937-67737164	inner
CUST_30923_PI429285431	6.2210326	P	6.1597614	P	1.04338471213524	0	lncRNA	32711-1_{1..459}	n336978|BC106958|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338596|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338596|2.6535000|-0.0744037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336978|BC106958|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338596|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338596|2.6535000|-0.0744037	chr16	 71893821	 71894279	-	NA	NA	NA	NA	ATXN1L	NA	chr16:71883821-71904280	inner
LNCA_21_P0007600	1.0035255	A	0.97279847	A	1.02152678299417	0	lncRNA	TCONS_00020511	NA	NA	NA	NA	XLOC_009828	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009828), lincRNA [TCONS_00020511]"	chr12:90460834-90460893	hs|12q21.33	Agilent_HUMAN_G3V2	TCONS_00020511	TCONS_00020511	chr12	 90460834	 90460893	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35967_PI429285431	2.1138763	A	2.0073307	A	1.07664721543204	0	lncRNA	37317-1_{1..3000}	n344592|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_140|NULL|-1.3339400|-0.2506281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344592|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_140|NULL|-1.3339400|-0.2506281	chr6	 30805172	 30808171	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.71;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50"	NA	inter
CUST_23512_PI429285431	1.175124	A	0.93062735	A	1.1846793693699	0	lncRNA	25079-1_{1..1721}	lnc-CD40LG-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD40LG-1:3	chrX	135722933	135724653	+	lnc-CD40LG-1	lnc-CD40LG-1:3	ENSG00000233093.1	RP3-527F8.2	CD40LG	NA	chrX:135730336-135734588	inter
CUST_36085_PI429285431	0.9123706	A	0.9937519	A	0.945152282805272	0	lncRNA	37388-2_{3001..6000}	n344672|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_221|NULL|-1.2987500|-0.2786196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344672|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_221|NULL|-1.2987500|-0.2786196	chr8	 29359099	 29362098	-	NA	NA	NA	NA	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_2551_PI429285431	4.5771194	P	4.7784414	P	0.869753207874744	0	lncRNA	2539-1_{1..352}	"transcript_id ""ENST00000456795.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456795.1"" | genecode_v17"	chr6	 72038645	 72038996	+	ENSG00000230597.1	ENST00000456795.1	RP3-331H24.4	RP3-331H24.4-001	NA	NA	NA	inter
CUST_35132_PI429285431	0.93502367	A	0.92150813	A	1.00941227793249	0	lncRNA	36534-1_{1..2922}	n342100|AK128420|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4582|NULL|-1.1591300|-0.2594215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342100|AK128420|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4582|NULL|-1.1591300|-0.2594215	chr6	108018502	108021423	-	NA	NA	NA	NA	SCML4	NA	chr6:108023364-108031422	inter
CUST_42913_PI429285431	7.557513	P	8.05072	P	0.710444078719206	0	lncRNA	46014-1_{1..183}	ENST00000517114 ncrna:snoRNA chromosome:GRCh37:2:197550872:197551054:-1 gene:ENSG00000252923 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517114 ncrna:snoRNA chromosome:GRCh37:2:197550872:197551054:-1 gene:ENSG00000252923 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	197550872	197551054	-	ENSG00000252923	ENST00000517114	NA	NA	CCDC150	NA	chr2:197540872-197561054	inner
CUST_38656_PI429285431	5.8974423	P	6.531394	P	0.644408889052252	0	lncRNA	39658-2_{3001..4103}	n383917|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xlo.2||-0.0083506|-0.2248358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n383917|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xlo.2||-0.0083506|-0.2248358	chr20	 42849121	 42850223	+	NA	NA	NA	NA	C20orf111	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr20:42836121-42839546"	NA	inter
CUST_7976_PI429285431	1.072013	A	1.7559339	A	0.622471245572834	0	lncRNA	9588-1_{1..378}	lnc-AMIGO2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AMIGO2-1:1	chr12	 47610167	 47610544	-	lnc-AMIGO2-1	lnc-AMIGO2-1:1	ENSG00000247774	RP11-493L12.2	FAM113B	NA	chr12:47610052-47620239	inner
CUST_33319_PI429285431	3.8154407	P	2.6201973	A	2.28983461124188	0	lncRNA	34902-1_{1..1479}	n340036|BC018977|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2491|NULL|-0.6789260|-0.1695402	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340036|BC018977|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2491|NULL|-0.6789260|-0.1695402	chr10	 60085387	 60086865	-	NA	NA	NA	NA	UBE2D1	NA	chr10:60094739-60096790	inter
CUST_5226_PI429285431	4.995681	P	5.2968326	P	0.811604292214243	0	lncRNA	5167-1_{1..569}	"transcript_id ""ENST00000561310.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561310.1"" | genecode_v17"	chr15	 70487977	 70488545	-	ENSG00000259252.1	ENST00000561310.1	AC011648.1	AC011648.1-001	NA	NA	NA	inter
CUST_2482_PI429285431	0.9064122	A	0.90277326	A	1.00252550472908	0	lncRNA	2474-1_{1..386}	"transcript_id ""ENST00000427011.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427011.1"" | genecode_v17"	chr6	 14005151	 14005536	+	ENSG00000233981.1	ENST00000427011.1	RP3-380E11.2	RP3-380E11.2-001	NA	NA	NA	inter
CUST_48290_PI429285431	2.6464462	A	3.2650523	P	0.651299895360586	0	lncRNA	52148-1_{1..1537}	hg19_lincRNAsTranscripts_TCONS_l2_00000111 range=chr1:16971255-16974738 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000111 range=chr1:16971255-16974738 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16971255	 16972791	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49839_PI429285431	5.4817553	P	5.6978083	P	0.860917560401229	0	lncRNA	53597-1_{1..280}	hg19_lincRNAsTranscripts_TCONS_l2_00026645 range=chr7:65467040-65496528 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026645 range=chr7:65467040-65496528 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 65467040	 65467319	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-64.40"	NA	inter
CUST_26821_PI429285431	4.4980917	P	4.721745	P	0.856394063411827	0	lncRNA	28334-1_{1..2691}	n323890|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060663|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060663|0.4322900|-0.1888889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323890|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060663|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060663|0.4322900|-0.1888889	chrX	 39753472	 39756162	+	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10"	NA	inter
CUST_9974_PI429285431	4.223158	P	4.895157	P	0.627636430685593	0	lncRNA	11498-1_{1..567}	lnc-MYCN-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYCN-1:2	chr2	 16075896	 16076462	+	lnc-MYCN-1	lnc-MYCN-1:2	XLOC_001364	linc-MYCN-1	MYCN	NA	chr2:16080683-16086286	inter
CUST_20102_PI429285431	5.643839	P	6.101387	P	0.728222892834186	0	lncRNA	21750-1_{1..701}	lnc-TNFRSF19-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNFRSF19-6:2	chr13	 24465752	 24466452	+	lnc-TNFRSF19-6	lnc-TNFRSF19-6:2	ENSG00000205861.7	C1QTNF9B-AS1	MIPEP	"hg19_refFlat_C1QTNF9B:range=chr13:24465428-244711255'pad=0,hg19_refFlat_C1QTNF9B:range=chr13:24465428-244711255'pad=0 3'pad=0 strand=- repeatMasking=none,-103.40;hg19_refFlat_C1QTNF9:range=chr13:24890142-248959065'pad=0,hg19_refFlat_C1QTNF9:range=chr13:24890142-248959065'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.40chr13:24455752-24463587"	NA	inner
CUST_50860_PI429285431	3.563829	P	3.9499516	P	0.765183356985776	0	lncRNA	54504-1_{1..340}	hg19_lincRNAsTranscripts_TCONS_l2_00004725 range=chr11:94383644-94384790 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004725 range=chr11:94383644-94384790 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 94383644	 94383983	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38170_PI429285431	6.356829	P	5.70336	P	1.57294584389063	0	lncRNA	39241-1_{1..688}	n381424|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ixe.1||1.8147000|-0.2044058	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381424|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ixe.1||1.8147000|-0.2044058	chr10	 34398517	 34399204	-	NA	NA	NA	NA	PARD3	NA	chr10:34398488-34409205	inner
CUST_32909_PI429285431	2.0303934	A	1.1764753	A	1.80740284658203	0	lncRNA	34534-1_{1..1846}	n339581|BC026111|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2025|NULL|-0.8532890|-0.2526465	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339581|BC026111|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2025|NULL|-0.8532890|-0.2526465	chr20	 11890051	 11891896	-	NA	NA	NA	NA	BTBD3	"hg19_refFlat_BTBD3:range=chr20:11898924-119043145'pad=0,hg19_refFlat_BTBD3:range=chr20:11898924-119043145'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_BTBD3:range=chr20:11899107-119043145'pad=0,hg19_refFlat_BTBD3:range=chr20:11899107-119043145'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30chr20:11880051-11907243"	NA	inner
CUST_6315_PI429285431	2.825117	A	2.5451174	A	1.21419454774879	0	lncRNA	6239-1_{1..418}	"transcript_id ""ENST00000598782.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598782.1"" | genecode_v17"	chr19	  4785132	  4785549	-	ENSG00000268536.1	ENST00000598782.1	AC005523.3	AC005523.3-001	FEM1A	NA	chr19:4791728-4795571	inter
CUST_23511_PI429285431	3.7106903	P	3.9115896	P	0.870008077084469	0	lncRNA	25078-1_{1..1429}	lnc-CTF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTF1-1:1	chr16	 30905869	 30907297	+	lnc-CTF1-1	lnc-CTF1-1:1	ENSG00000260083.1	MIR4519	BCL7C	NA	chr16:30899116-30905399	inter
CUST_35058_PI429285431	1.8699012	A	2.300365	A	0.742023200114325	0	lncRNA	36468-1_{1..730}	n342005|BC032033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4486|NULL|-1.3316200|-0.2745236	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342005|BC032033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4486|NULL|-1.3316200|-0.2745236	chr12	105500701	105501430	-	NA	NA	NA	NA	KIAA1033	NA	chr12:105501492-105511413	inter
CUST_41453_PI429285431	10.598702	P	10.873404	P	0.826621045595106	0	lncRNA	42633-1_{1..69}	ENST00000577421 ncrna:miRNA chromosome:GRCh37:11:118889654:118889722:1 gene:ENSG00000266398 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577421 ncrna:miRNA chromosome:GRCh37:11:118889654:118889722:1 gene:ENSG00000266398 gene_biotype:miRNA transcript_biotype:miRNA	chr11	118889654	118889722	+	ENSG00000266398	ENST00000577421	NA	NA	CCDC84	NA	chr11:118879654-118886455	inter
CUST_40973_PI429285431	2.082999	A	3.0724168	P	0.503680994631643	0	lncRNA	41644-2_{3001..3871}	n411065|NR_038889|lncRNA|Homosapiens||RefGeneNoncode|NR_038889||-0.9780090|-0.2809610	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n411065|NR_038889|lncRNA|Homosapiens||RefGeneNoncode|NR_038889||-0.9780090|-0.2809610	chr7	 30590972	 30591842	-	NA	NA	NA	NA	NA	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40"	NA	inter
CUST_43091_PI429285431	0.9282569	A	0.9231499	A	1.00354617550609	0	lncRNA	47379-1_{1..135}	ENST00000364778 ncrna:snRNA chromosome:GRCh37:3:175327267:175327401:1 gene:ENSG00000201648 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364778 ncrna:snRNA chromosome:GRCh37:3:175327267:175327401:1 gene:ENSG00000201648 gene_biotype:snRNA transcript_biotype:snRNA	chr3	175327267	175327401	+	ENSG00000201648	ENST00000364778	NA	NA	NAALADL2	NA	chr3:175317267-175337401	inner
CUST_49727_PI429285431	1.2674137	A	0.95548475	A	1.24136635507739	0	lncRNA	53500-1_{1..906}	hg19_lincRNAsTranscripts_TCONS_l2_00025770 range=chr7:29695348-29699931 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025770 range=chr7:29695348-29699931 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 29695348	 29696253	+	NA	NA	NA	NA	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10"	NA	inter
CUST_35888_PI429285431	0.9063425	A	1.1295055	A	0.856685158449444	0	lncRNA	37274-2_{3001..6000}	n344549|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_97|NULL|-1.3386900|-0.3545874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344549|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_97|NULL|-1.3386900|-0.3545874	chr5	 88239140	 88242139	+	NA	NA	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-62.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
CUST_25024_PI429285431	4.4673867	P	3.771841	P	1.61949689263002	0	lncRNA	26564-1_{1..1683}	lnc-KIAA0101-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0101-1:3	chr15	 64665694	 64667376	-	lnc-KIAA0101-1	lnc-KIAA0101-1:3	ENSG00000259316.1	CTD-2116N17.1	KIAA0101	NA	chr15:64657193-64673702	inner
CUST_40735_PI429285431	2.561808	A	2.530989	A	1.02159190612153	0	lncRNA	41468-2_{3001..6000}	n410439|NR_037573|lncRNA|Homosapiens||RefGeneNoncode|NR_037573||1.6927100|-0.3033670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410439|NR_037573|lncRNA|Homosapiens||RefGeneNoncode|NR_037573||1.6927100|-0.3033670	chr16	 23655686	 23658685	+	NA	NA	NA	NA	PLK1	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30chr16:23690201-23695068"	NA	inner
CUST_30280_PI429285431	4.1562743	P	3.5846343	P	1.48621207921992	0	lncRNA	32056-1_{1..419}	n335176|AY425956|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254571|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254571|1.1284700|-0.2024586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335176|AY425956|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254571|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254571|1.1284700|-0.2024586	chr2	122168459	122168877	-	NA	NA	NA	NA	CLASP1	NA	chr2:122158459-122214949	inner
CUST_13970_PI429285431	2.030888	A	2.7523906	A	0.606465465442735	0	lncRNA	15615-2_{3001..3452}	lnc-CCDC54-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CCDC54-2:7	chr3	107007167	107007618	+	lnc-CCDC54-2	lnc-CCDC54-2:7	XLOC_002746	linc-CCDC54	NA	NA	NA	inter
LNCA_21_P0013757	18.072447	P	17.969463	P	1.07399256059543	0	lncRNA	TCONS_l2_00030171	NA	NA	NA	NA	XLOC_l2_015478	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015478), lincRNA [TCONS_l2_00030171]"	chrX:30649021-30649080	hs|Xp21.2	Agilent_HUMAN_G3V2	TCONS_l2_00030171	TCONS_l2_00030171	chrX	 30649021	 30649080	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6022_PI429285431	3.342991	P	3.576681	P	0.850456882887226	0	lncRNA	5948-1_{1..641}	"transcript_id ""ENST00000572343.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000572343.1"" | genecode_v17"	chr17	 81091900	 81092540	+	ENSG00000262898.1	ENST00000572343.1	AC139099.4	AC139099.4-001	NA	NA	NA	inter
CUST_20259_PI429285431	4.6902437	P	4.7633786	P	0.950570213479081	0	lncRNA	21902-1_{1..1011}	lnc-TMPRSS2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMPRSS2-4:2	chr21	 42558375	 42559385	-	lnc-TMPRSS2-4	lnc-TMPRSS2-4:2	ENSG00000225745.4	AL773572.7	BACE2	NA	chr21:42548375-42568700	inner
CUST_49516_PI429285431	1.4992626	A	1.069967	A	1.34657594675781	0	lncRNA	53308-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00024133 range=chr6:28953595-28958433 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024133 range=chr6:28953595-28958433 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 28953595	 28956594	+	NA	NA	NA	NA	ZNF311	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50chr6:28962594-28968433"	NA	inter
CUST_12638_PI429285431	1.6922109	A	1.3648198	A	1.2547423063389	0	lncRNA	14255-1_{1..622}	lnc-RP11-116D17.1.1-12:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RP11-116D17.1.1-12:1	chr12	115060609	115061230	+	lnc-RP11-116D17.1.1-12	lnc-RP11-116D17.1.1-12:1	XLOC_009890	linc-MAP1LC3B2-9	NA	NA	NA	inter
CUST_1894_PI429285431	0.90503633	A	0.90510243	A	0.999954184020949	0	lncRNA	1885-1_{1..667}	"transcript_id ""ENST00000508605.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508605.1"" | genecode_v17"	chr4	135988388	135989054	+	ENSG00000248434.1	ENST00000508605.1	RP11-553P9.2	RP11-553P9.2-002	NA	NA	NA	inter
CUST_4901_PI429285431	5.5503993	P	6.1496	P	0.660119581822182	0	lncRNA	4843-1_{1..1677}	"transcript_id ""ENST00000556072.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556072.1"" | genecode_v17"	chr14	 77248083	 77249759	-	ENSG00000258301.2	ENST00000556072.1	RP11-488C13.5	RP11-488C13.5-001	VASH1	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.17;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00chr14:77238083-77249363"	NA	inner
CUST_1120_PI429285431	1.6979396	A	1.6831979	A	1.01027055153811	0	lncRNA	1109-1_{1..531}	"transcript_id ""ENST00000604253.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604253.1"" | genecode_v17"	chr2	145929565	145930095	+	ENSG00000226674.3	ENST00000604253.1	AC074093.1	AC074093.1-038	NA	NA	NA	inter
CUST_26122_PI429285431	0.94945514	A	0.91752106	A	1.02238181460477	0	lncRNA	27633-1_{1..851}	lnc-CPSF6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPSF6-1:1	chr12	 69617657	 69618507	+	lnc-CPSF6-1	lnc-CPSF6-1:1	ENSG00000258140.1	RP11-324P9.1	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10"	NA	inter
CUST_45826_PI429285431	11.099431	P	11.249729	P	0.901064321469242	0	lncRNA	50160-1_{1..2518}	"gi|109148511|ref|NR_003089.1| Homo sapiens OTU domain, ubiquitin aldehyde binding 1 (OTUB1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|109148511|ref|NR_003089.1| Homo sapiens OTU domain, ubiquitin aldehyde binding 1 (OTUB1), transcript variant 2, non-coding RNA"	Chr11	 63753325	 63755842	+	55611	NR_003089.1	NA	NA	NA	NA	NA	inter
CUST_29003_PI429285431	0.9173205	A	0.91002375	A	1.00507053355461	0	lncRNA	30727-1_{1..428}	n326487|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030279|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030279|-1.0212600|-0.2666480	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326487|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030279|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030279|-1.0212600|-0.2666480	chr1	108416515	108416942	+	NA	NA	NA	NA	VAV3	NA	chr1:108406515-108428638	inner
CUST_11253_PI429285431	5.552244	P	6.030661	P	0.717764760895149	0	lncRNA	12811-1_{1..279}	lnc-CYP4A22-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CYP4A22-2:4	chr1	 47645540	 47645818	+	lnc-CYP4A22-2	lnc-CYP4A22-2:4	XLOC_000175	linc-CMPK1-3	PDZK1IP1	NA	chr1:47649261-47655573	inter
CUST_14991_PI429285431	1.5639315	A	0.92396116	A	1.55829712235792	0	lncRNA	16654-1_{1..375}	lnc-B3GALT5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-B3GALT5-1:2	chr21	 41098692	 41099066	+	lnc-B3GALT5-1	lnc-B3GALT5-1:2	XLOC_013945	linc-IGSF5-2	NA	NA	NA	inter
CUST_39567_PI429285431	1.50744	A	1.2613218	A	1.18601166536237	0	lncRNA	40511-1_{1..637}	n387527|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011grc.1||-1.2167900|-0.4847967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387527|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011grc.1||-1.2167900|-0.4847967	chr6	  1241472	  1242108	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50332_PI429285431	8.249262	P	9.036806	P	0.579329485795315	0	lncRNA	54050-1_{1..2583}	hg19_lincRNAsTranscripts_TCONS_l2_00029063 range=chr9:132101991-132109755 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029063 range=chr9:132101991-132109755 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132101991	132104573	+	NA	NA	NA	NA	NA	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80"	NA	inter
CUST_3493_PI429285431	11.939722	P	12.502658	P	0.676923168132837	0	lncRNA	3464-1_{1..564}	"transcript_id ""ENST00000583864.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583864.1"" | genecode_v17"	chr9	 98783296	 98783859	-	ENSG00000225194.2	ENST00000583864.1	LINC00092	LINC00092-002	NA	NA	NA	inter
CUST_40016_PI429285431	3.5526338	P	3.2906823	P	1.19909960221687	0	lncRNA	40877-1_{1..3000}	n407167|NR_026586|lncRNA|Homosapiens||RefGeneNoncode|NR_026586||1.1774000|-0.2278617	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407167|NR_026586|lncRNA|Homosapiens||RefGeneNoncode|NR_026586||1.1774000|-0.2278617	chr1	245133283	245136282	+	NA	NA	NA	NA	EFCAB2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.70chr1:245133171-245288530"	NA	inter
CUST_4869_PI429285431	1.0702147	A	0.9157294	A	1.11302446160422	0	lncRNA	4812-1_{1..531}	"transcript_id ""ENST00000557723.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557723.1"" | genecode_v17"	chr14	 66578349	 66578879	+	ENSG00000258502.1	ENST00000557723.1	RP11-783L4.1	RP11-783L4.1-004	NA	NA	NA	inter
CUST_31972_PI429285431	4.454304	P	4.7886577	P	0.793139368421273	0	lncRNA	33695-1_{1..1813}	n338530|CR621509|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|929|NULL|-1.0882700|-0.2231157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338530|CR621509|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|929|NULL|-1.0882700|-0.2231157	chr1	218517553	218519365	-	NA	NA	NA	NA	RRP15	NA	chr1:218507553-218511325	inner
CUST_49068_PI429285431	8.040863	P	7.443964	P	1.51246210933398	0	lncRNA	52893-1_{1..2319}	hg19_lincRNAsTranscripts_TCONS_l2_00021818 range=chr4:3943672-3957148 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021818 range=chr4:3943672-3957148 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  3943672	  3945990	-	NA	NA	NA	NA	NA	"hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30;hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30;hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30"	NA	inter
CUST_26326_PI429285431	0.9294412	A	0.921359	A	1.00561787555245	0	lncRNA	27833-1_{1..269}	lnc-KIAA1324L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1324L-2:1	chr7	 86405261	 86405529	-	lnc-KIAA1324L-2	lnc-KIAA1324L-2:1	ENSG00000231255.1	AC005009.1	GRM3	NA	chr7:86395261-86415338	inner
CUST_11041_PI429285431	2.269575	A	1.8385658	A	1.34817632896816	0	lncRNA	12587-2_{3001..4811}	lnc-MPEG1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MPEG1-2:5	chr11	 58906530	 58908340	-	lnc-MPEG1-2	lnc-MPEG1-2:5	XLOC_009445	linc-GLYATL2	FAM111B	NA	chr11:58893530-58894888	inter
CUST_28190_PI429285431	1.7844514	A	1.89624	A	0.925440024045803	0	lncRNA	29817-1_{1..2663}	n325470|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323189|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323189|-0.9110890|-0.4095057	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325470|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323189|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323189|-0.9110890|-0.4095057	chr2	  4653686	  4656348	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29928_PI429285431	2.075715	A	2.3363006	A	0.834749020190935	0	lncRNA	31692-1_{1..1049}	n334092|M37128|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195707|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195707|-0.2955950|-0.1858278	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334092|M37128|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195707|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195707|-0.2955950|-0.1858278	chr19	 52249198	 52250246	+	NA	NA	NA	NA	FPR1	"hg19_refFlat_FPR1:range=chr19:52249195-522502475'pad=0,hg19_refFlat_FPR1:range=chr19:52249195-522502475'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40chr19:52249023-52255150"	NA	inner
CUST_5140_PI429285431	1.1854949	A	1.6963475	A	0.701807562961295	0	lncRNA	5080-1_{1..652}	"transcript_id ""ENST00000560886.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560886.1"" | genecode_v17"	chr15	 36231368	 36232019	-	ENSG00000259639.1	ENST00000560886.1	RP11-184D12.1	RP11-184D12.1-001	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70"	NA	inter
CUST_2956_PI429285431	0.922809	A	0.91351974	A	1.00645959817051	0	lncRNA	2937-1_{1..2698}	"transcript_id ""ENST00000436670.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000436670.1"" | genecode_v17"	chr7	156230483	156233180	-	ENSG00000233878.1	ENST00000436670.1	AC073133.1	AC073133.1-001	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40"	NA	inter
CUST_40569_PI429285431	0.9051574	A	0.9046079	A	1.00038095692138	0	lncRNA	41323-3_{6001..6124}	n410004|NR_036431|lncRNA|Homosapiens||RefGeneNoncode|NR_036431||4.9575000|-0.3484917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410004|NR_036431|lncRNA|Homosapiens||RefGeneNoncode|NR_036431||4.9575000|-0.3484917	chrX	101143259	101143382	-	NA	NA	NA	NA	ZMAT1	NA	chrX:101137260-101155193	inter
CUST_30268_PI429285431	0.91996515	A	1.2141247	A	0.815547295644611	0	lncRNA	32043-1_{1..646}	n335153|AY309094|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251592|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251592|1.4184700|-0.2402414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335153|AY309094|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251592|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251592|1.4184700|-0.2402414	chr6	  9900647	  9901292	-	NA	NA	NA	NA	OFCC1	NA	chr6:9890647-9977826	inter
CUST_31014_PI429285431	11.235236	P	11.488039	P	0.839264230808639	0	lncRNA	32803-1_{1..560}	n337214|BC111428|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386628|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386628|0.3125080|-0.1228453	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337214|BC111428|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386628|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386628|0.3125080|-0.1228453	chr1	 36636863	 36637422	+	NA	NA	NA	NA	MAP7D1	NA	chr1:36626863-36646441	inner
CUST_28810_PI429285431	0.92527425	A	0.9170149	A	1.00574136398165	0	lncRNA	30518-1_{1..455}	n326222|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091112|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091112|-0.2105520|-0.2965338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326222|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091112|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091112|-0.2105520|-0.2965338	chr1	220206305	220206759	+	NA	NA	NA	NA	EPRS	"hg19_refFlat_EPRS:range=chr1:220142148-2202197305'pad=0,hg19_refFlat_EPRS:range=chr1:220142148-2202197305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60chr1:220196305-220220000"	NA	inner
CUST_18610_PI429285431	0.9070645	A	1.2112988	A	0.809871936197962	0	lncRNA	20317-1_{1..697}	lnc-ERG-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ERG-2:5	chr21	 40124131	 40124827	-	lnc-ERG-2	lnc-ERG-2:5	ENSG00000223806	NCRNA00114	NA	NA	NA	inter
CUST_28308_PI429285431	0.9090295	A	1.4903752	A	0.668340080208381	0	lncRNA	29954-1_{1..3000}	n325614|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000072281|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000072281|0.0485905|-0.3177811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325614|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000072281|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000072281|0.0485905|-0.3177811	chr14	 59456183	 59459182	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
CUST_11599_PI429285431	0.9120628	A	0.9063803	A	1.00394657615575	0	lncRNA	13179-1_{1..1403}	lnc-CDK5R2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK5R2-1:4	chr2	219842204	219843606	+	lnc-CDK5R2-1	lnc-CDK5R2-1:4	XLOC_001866	linc-FAM134A	FEV	NA	chr2:219845809-219850379	inter
CUST_28757_PI429285431	2.3645525	A	2.6936927	A	0.796010739305503	0	lncRNA	30461-1_{1..792}	n326157|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096158|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096158|-1.0707400|-0.3126663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326157|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096158|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096158|-1.0707400|-0.3126663	chr1	241235769	241236560	-	NA	NA	NA	NA	RGS7	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-60.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10chr1:241225769-241247393"	NA	inner
CUST_18158_PI429285431	0.91553676	A	1.0697472	A	0.898624038453066	0	lncRNA	19893-1_{1..435}	lnc-SLC39A11-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC39A11-2:11	chr17	 70085189	 70085623	-	lnc-SLC39A11-2	lnc-SLC39A11-2:11	ENSG00000234899	AC005152.2	NA	NA	NA	inter
CUST_29205_PI429285431	0.91984886	A	1.1400286	A	0.85845847763178	0	lncRNA	30952-1_{1..429}	n326724|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001338|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001338|-0.7544440|-0.1495060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326724|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001338|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001338|-0.7544440|-0.1495060	chr1	  2720856	  2721284	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15176_PI429285431	2.5203729	A	2.514976	A	1.00374785171625	0	lncRNA	16840-1_{1..922}	lnc-KLF6-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF6-5:1	chr10	  3544810	  3545731	-	lnc-KLF6-5	lnc-KLF6-5:1	XLOC_008695	linc-PITRM1-3	NA	NA	NA	inter
CUST_46612_PI429285431	0.9131241	A	1.3411386	A	0.743284021702218	0	lncRNA	50790-1_{1..768}	"gi|410170725|ref|XR_171065.1| PREDICTED: Homo sapiens uncharacterized LOC101059992 (LOC101059992), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170725|ref|XR_171065.1| PREDICTED: Homo sapiens uncharacterized LOC101059992 (LOC101059992), misc_RNA"	NA	NA	NA	NA	NA	XR_171065.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90"	NA	Unknown
CUST_33396_PI429285431	2.5731099	A	3.4254262	P	0.553894723381416	0	lncRNA	34974-1_{1..859}	n340117|BC016361|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2576|NULL|-1.0151900|-0.2997408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340117|BC016361|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2576|NULL|-1.0151900|-0.2997408	chr4	 75144013	 75144871	-	NA	NA	NA	NA	MTHFD2L	NA	chr4:75134013-75168816	inner
CUST_1451_PI429285431	4.8328724	P	5.2307844	P	0.758955919072841	0	lncRNA	1440-1_{1..686}	"transcript_id ""ENST00000599350.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599350.1"" | genecode_v17"	chr3	125546081	125546766	-	ENSG00000241288.2	ENST00000599350.1	RP11-379B18.5	RP11-379B18.5-005	NA	NA	NA	inter
CUST_26330_PI429285431	4.1514707	P	4.2222147	P	0.952146847851494	0	lncRNA	27837-1_{1..670}	lnc-SRGAP3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRGAP3-1:3	chr3	  9439108	  9439777	-	lnc-SRGAP3-1	lnc-SRGAP3-1:3	ENSG00000206573.4	RP11-58B17.1	LOC100652926	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-64.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-59.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.24;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70chr3:9435634-9438752"	NA	inter
CUST_33486_PI429285431	0.90329415	A	0.89294064	A	1.00720231909819	0	lncRNA	35058-1_{1..1474}	n340225|BC071818|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2686|NULL|-1.2841900|-0.4003222	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340225|BC071818|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2686|NULL|-1.2841900|-0.4003222	chr4	137018953	137020426	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10"	NA	inter
CUST_12342_PI429285431	0.9117819	A	0.9028757	A	1.00619240155285	0	lncRNA	13954-1_{1..2676}	lnc-PIK3C3-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIK3C3-2:3	chr18	 37243283	 37245958	+	lnc-PIK3C3-2	lnc-PIK3C3-2:3	XLOC_012664	linc-PIK3C3-2	NA	NA	NA	inter
CUST_4674_PI429285431	2.4312844	A	3.1001482	A	0.629001865071476	0	lncRNA	4620-1_{1..2018}	"transcript_id ""ENST00000419272.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000419272.1"" | genecode_v17"	chr13	 91543208	 91545225	-	ENSG00000231674.1	ENST00000419272.1	LINC00410	LINC00410-001	NA	NA	NA	inter
CUST_39989_PI429285431	4.630105	P	4.975155	P	0.787280691026819	0	lncRNA	40855-4_{9001..9547}	n407092|NR_024593|lncRNA|Homosapiens||RefGeneNoncode|NR_024593||3.4704200|-0.1636103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407092|NR_024593|lncRNA|Homosapiens||RefGeneNoncode|NR_024593||3.4704200|-0.1636103	chr22	 25050132	 25050678	-	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0,hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10"	NA	inter
CUST_7922_PI429285431	0.91702116	A	0.9199207	A	0.997992210335763	0	lncRNA	9533-3_{6001..6166}	lnc-LECT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LECT1-1:1	chr13	 53274955	 53275120	-	lnc-LECT1-1	lnc-LECT1-1:1	ENSG00000248190	XLOC_010622	SUGT1	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70chr13:53258955-53262433"	NA	inter
CUST_26371_PI429285431	0.9259811	A	0.9108504	A	1.0105429918118	0	lncRNA	27878-1_{1..501}	lnc-C15orf42-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C15orf42-1:1	chr15	 90134734	 90135234	+	lnc-C15orf42-1	lnc-C15orf42-1:1	ENSG00000259713.1	RP11-429B14.1	C15orf42	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-24.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10chr15:90124734-90145187"	NA	inner
CUST_13538_PI429285431	0.9157747	A	0.914268	A	1.00104491039582	0	lncRNA	15177-1_{1..618}	lnc-PAWR-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAWR-5:1	chr12	 78820301	 78820918	-	lnc-PAWR-5	lnc-PAWR-5:1	XLOC_010137	linc-E2F7-1	NA	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80"	NA	inter
CUST_19017_PI429285431	1.7353892	A	1.5344903	A	1.14941429749976	0	lncRNA	20707-1_{1..524}	lnc-C3orf32-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C3orf32-2:5	chr3	  8543157	  8543680	-	lnc-C3orf32-2	lnc-C3orf32-2:5	ENSG00000227110	AC087859.1	LMCD1	NA	chr3:8543511-8553315	inter
CUST_40881_PI429285431	2.6803467	A	2.4713404	A	1.15589175412337	0	lncRNA	41573-1_{1..1771}	n410681|NR_037931|lncRNA|Homosapiens||RefGeneNoncode|NR_037931||7.7167000|-0.2308126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410681|NR_037931|lncRNA|Homosapiens||RefGeneNoncode|NR_037931||7.7167000|-0.2308126	chr2	 87088947	 87090717	+	NA	NA	NA	NA	CD8B	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CD8B:range=chr2:87069430-870889885'pad=0,hg19_refFlat_CD8B:range=chr2:87069430-870889885'pad=0 3'pad=0 strand=- repeatMasking=none,-99.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_CD8B:range=chr2:87049452-870889885'pad=0,hg19_refFlat_CD8B:range=chr2:87049452-870889885'pad=0 3'pad=0 strand=- repeatMasking=none,-99.90;hg19_refFlat_CD8B:range=chr2:87042730-870889885'pad=0,hg19_refFlat_CD8B:range=chr2:87042730-870889885'pad=0 3'pad=0 strand=- repeatMasking=none,-99.90;hg19_refFlat_CD8B:range=chr2:87042738-870889885'pad=0,hg19_refFlat_CD8B:range=chr2:87042738-870889885'pad=0 3'pad=0 strand=- repeatMasking=none,-99.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80chr2:87078947-87089047"	NA	inter
CUST_10774_PI429285431	0.89898527	A	0.89458466	A	1.00305492722268	0	lncRNA	12311-1_{1..3000}	lnc-GPR63-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR63-4:1	chr6	 96371927	 96374926	-	lnc-GPR63-4	lnc-GPR63-4:1	XLOC_005787	linc-EPHA7-2	NA	NA	NA	inter
LNCA_21_P0005902	1.0913203	A	0.91239953	A	1.13203673115247	0	lncRNA	TCONS_00015165	NA	NA	NA	NA	XLOC_007211	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007211), lincRNA [TCONS_00015165]"	chr8:127644056-127643997	hs|8q24.21	Agilent_HUMAN_G3V2	TCONS_00015165	TCONS_00015165	chr8	127643997	127644056	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32913_PI429285431	0.92982274	A	0.9435612	A	0.990522423221825	0	lncRNA	34537-2_{3001..4111}	n339585|AL833490|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2029|NULL|-1.1669100|-0.4236392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339585|AL833490|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2029|NULL|-1.1669100|-0.4236392	chr20	 14594718	 14595828	+	NA	NA	NA	NA	MACROD2	NA	chr20:14581718-14605690	inner
CUST_20225_PI429285431	2.5765765	A	3.218564	P	0.640829514420682	0	lncRNA	21869-1_{1..398}	lnc-ZNF75D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF75D-1:1	chrX	134654492	134654889	-	lnc-ZNF75D-1	lnc-ZNF75D-1:1	ENSG00000225235.1	DDX26B-AS1	DDX26B	NA	chrX:134654555-134664599	inner
CUST_22462_PI429285431	1.8333176	A	2.6916087	A	0.551605558500267	0	lncRNA	24050-1_{1..513}	lnc-CD58-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CD58-2:1	chr1	117105507	117106019	-	lnc-CD58-2	lnc-CD58-2:1	ENSG00000230381.1	RP4-655J12.5	CD58	NA	chr1:117095507-117113715	inner
CUST_45703_PI429285431	1.4846311	A	1.7489843	A	0.832571916017462	0	lncRNA	50072-1_{1..2854}	"gi|310120605|ref|XR_109057.1| PREDICTED: Homo sapiens uncharacterized LOC692247 (LOC692247), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310120605|ref|XR_109057.1| PREDICTED: Homo sapiens uncharacterized LOC692247 (LOC692247), misc_RNA"	NA	NA	NA	NA	NA	XR_109057.1	NA	NA	NA	"hg19_refFlat_C11orf35:range=chr11:554980-5607165'pad=0,hg19_refFlat_C11orf35:range=chr11:554980-5607165'pad=0 3'pad=0 strand=- repeatMasking=none,-102.00"	NA	Unknown
CUST_47343_PI429285431	10.301855	P	10.738524	P	0.73883852533822	0	lncRNA	51395-2_{3001..5264}	"gi|237681205|ref|NR_027686.1| Homo sapiens long intergenic non-protein coding RNA 176 (LINC00176), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|237681205|ref|NR_027686.1| Homo sapiens long intergenic non-protein coding RNA 176 (LINC00176), transcript variant 1, non-coding RNA"	Chr20	 62668697	 62670960	+	284739	NR_027686.1	NA	NA	NA	NA	NA	inter
CUST_40815_PI429285431	1.0747374	A	1.0663984	A	1.00579689166335	0	lncRNA	41519-2_{3001..4060}	n410582|NR_037846_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037846_5||0.0567725|-0.2674892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410582|NR_037846_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037846_5||0.0567725|-0.2674892	chr6	  3090408	  3091467	+	NA	NA	NA	NA	BPHL	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-62.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70chr6:3118926-3122321"	NA	inner
CUST_9904_PI429285431	2.7425814	A	2.7411463	P	1.00099523043229	0	lncRNA	11428-1_{1..268}	lnc-APPL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APPL2-2:1	chr12	105837640	105837907	-	lnc-APPL2-2	lnc-APPL2-2:1	XLOC_010183	linc-APPL2-1	NA	NA	NA	inter
CUST_10514_PI429285431	2.7782273	A	2.264338	A	1.42789441115438	0	lncRNA	12041-1_{1..283}	lnc-NAV2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAV2-2:3	chr11	 19332179	 19332461	+	lnc-NAV2-2	lnc-NAV2-2:3	XLOC_009083	linc-NAV2	NA	NA	NA	inter
CUST_43297_PI429285431	7.3441963	P	7.3859134	P	0.971497979202929	0	lncRNA	48116-1_{1..3000}	ENST00000553913 havana:sense_overlapping chromosome:GRCh37:14:96129593:96158967:1 gene:ENSG00000259084 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,ensembl.GRCh37.72,"	>ENST00000553913 havana:sense_overlapping chromosome:GRCh37:14:96129593:96158967:1 gene:ENSG00000259084 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	chr14	 96129593	 96132592	+	ENSG00000259084	ENST00000553913	NA	NA	TCL1B	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60chr14:96152754-96158980"	NA	inner
CUST_5117_PI429285431	2.8341806	A	3.488523	P	0.635365033289991	0	lncRNA	5057-1_{1..514}	"transcript_id ""ENST00000557672.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557672.1"" | genecode_v17"	chr15	 26363855	 26364368	+	ENSG00000259150.1	ENST00000557672.1	RP11-1084I9.3	RP11-1084I9.3-004	NA	NA	NA	inter
CUST_49717_PI429285431	3.3359475	P	3.7239985	P	0.764161246418222	0	lncRNA	53493-1_{1..851}	hg19_lincRNAsTranscripts_TCONS_l2_00026434 range=chr7:25695367-25702679 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026434 range=chr7:25695367-25702679 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 25695367	 25696217	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006408	0.9286846	A	1.6988499	A	0.586350288375772	0	lncRNA	AY660578	NA	AY660578	NA	NA	XLOC_008111	NA	NA	THC2612908	NA	"BROAD Institute lincRNA (XLOC_008111), lincRNA [TCONS_00016946]"	chrX:10988162-10988103	hs|Xp22.2	Agilent_HUMAN_G3V2	AY660578	AY660578	chrX	 10988103	 10988162	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9834_PI429285431	1.6839911	A	1.1959443	A	1.40254474745752	0	lncRNA	11355-1_{1..3000}	lnc-GDF10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GDF10-2:1	chr10	 48532564	 48535563	-	lnc-GDF10-2	lnc-GDF10-2:1	XLOC_008811	linc-GDF10-1	NA	NA	NA	inter
CUST_26879_PI429285431	1.4162142	A	1.4114563	A	1.00330336910808	0	lncRNA	28396-1_{1..605}	n323954|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054583|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054583|-0.0911686|-0.1995580	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323954|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054583|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054583|-0.0911686|-0.1995580	chr9	131292918	131293522	+	NA	NA	NA	NA	GLE1	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90chr9:131282918-131304580"	NA	inner
CUST_6932_PI429285431	7.1261215	P	6.791304	P	1.26121785548765	0	lncRNA	6883-1_{1..684}	"transcript_id ""ENST00000444039.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444039.1"" | genecode_v17"	chr22	 21311380	 21312063	+	ENSG00000237476.1	ENST00000444039.1	XXbac-B135H6.15	XXbac-B135H6.15-001	CRKL	NA	chr22:21301380-21308037	inter
CUST_50417_PI429285431	2.9097776	A	2.9362726	P	0.98180267325776	0	lncRNA	54121-1_{1..1011}	hg19_lincRNAsTranscripts_TCONS_l2_00030438 range=chrX:5637276-5644343 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030438 range=chrX:5637276-5644343 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	  5637276	  5638286	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14873_PI429285431	1.6764542	A	1.7449267	A	0.953647168463635	0	lncRNA	16538-1_{1..523}	lnc-ATG10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATG10-1:1	chr5	 81196247	 81196769	+	lnc-ATG10-1	lnc-ATG10-1:1	XLOC_004443	linc-ATG10	NA	NA	NA	inter
CUST_45966_PI429285431	8.534846	P	8.600003	P	0.955841293358157	0	lncRNA	50259-1_{1..634}	"gi|224548997|ref|NR_002803.2| Homo sapiens ribosomal protein L13 pseudogene 5 (RPL13P5), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224548997|ref|NR_002803.2| Homo sapiens ribosomal protein L13 pseudogene 5 (RPL13P5), non-coding RNA"	NW_003871083.2	    85565	    86198	+	283345	NR_002803.2	NA	NA	NA	NA	NA	Unknown
CUST_10380_PI429285431	3.1555936	P	3.8305662	P	0.626344114872312	0	lncRNA	11909-1_{1..1290}	lnc-AL137145.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL137145.1-1:2	chr10	  6373463	  6374752	+	lnc-AL137145.1-1	lnc-AL137145.1-1:2	XLOC_008367	linc-ITIH2-13	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40"	NA	inter
LNCA_21_P0008972	0.95703477	A	1.7806731	A	0.565015233506587	0	lncRNA	TCONS_00024472	NA	NA	NA	NA	XLOC_011793	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011793), lincRNA [TCONS_00024472]"	chr16:76806900-76806959	hs|16q23.1	Agilent_HUMAN_G3V2	TCONS_00024472	TCONS_00024472	chr16	 76806900	 76806959	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39729_PI429285431	4.5109825	P	4.7711754	P	0.834976268881194	0	lncRNA	40658-1_{1..1136}	n405695|NR_002932|lncRNA|Homosapiens||RefGeneNoncode|NR_002932||5.6137100|-0.1256828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405695|NR_002932|lncRNA|Homosapiens||RefGeneNoncode|NR_002932||5.6137100|-0.1256828	chr6	111367621	111368756	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51515_PI429285431	1.3797468	A	1.7541492	A	0.771424889817802	0	lncRNA	55089-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00010377 range=chr16:89979403-89983331 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010377 range=chr16:89979403-89983331 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 89979403	 89982402	-	NA	NA	NA	NA	TUBB3	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30chr16:89988417-89993331"	NA	inter
CUST_11493_PI429285431	1.3079779	A	1.266788	A	1.02896213987697	0	lncRNA	13061-1_{1..265}	lnc-THTPA-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THTPA-3:1	chr14	 23978549	 23978813	+	lnc-THTPA-3	lnc-THTPA-3:1	XLOC_010764	linc-THTPA	NA	NA	NA	inter
CUST_50918_PI429285431	1.0493922	A	1.0697024	A	0.986020673198434	0	lncRNA	54559-1_{1..460}	hg19_lincRNAsTranscripts_TCONS_l2_00006131 range=chr12:9718839-9721707 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006131 range=chr12:9718839-9721707 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  9718839	  9719298	-	NA	NA	NA	NA	OVOS	NA	chr12:9708839-9725776	inter
CUST_40_PI429201921	6.813797	P	7.093591	P	0.823708624840927	0	lncRNA	41-1_{1..1306}	TC15002336.hg.1	TCONS_l2_00008795-XLOC_l2_004771 // Broad TUCP // linc-ZSCAN2-2 chr15:+:85054685-85055992 // chr15 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr15:+:85054685-85055992	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00008795-XLOC_l2_004771	linc-ZSCAN2-2	chr15	 85054685	 85055992	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30851_PI429285431	7.292022	P	7.4325113	P	0.907211416108624	0	lncRNA	32639-1_{1..205}	n336837|AJ697940|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330146|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330146|-1.2809000|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336837|AJ697940|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330146|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330146|-1.2809000|-1.0000000	chr20	   361939	   362143	+	NA	NA	NA	NA	TRIB3	NA	chr20:361308-372144	inner
CUST_6991_PI429285431	1.1703798	A	1.5732757	A	0.756338571509088	0	lncRNA	6939-1_{1..475}	"transcript_id ""ENST00000415205.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415205.1"" | genecode_v17"	chr22	 42665766	 42666240	+	ENSG00000182057.4	ENST00000415205.1	Z83851.3	Z83851.3-002	NA	NA	NA	inter
CUST_45024_PI429285431	6.1545305	P	6.10203	P	1.03706081592814	0	lncRNA	49524-2_{3001..3705}	"gi|304434827|ref|NR_036569.1| Homo sapiens paired immunoglobin-like type 2 receptor beta (PILRB), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|304434827|ref|NR_036569.1| Homo sapiens paired immunoglobin-like type 2 receptor beta (PILRB), transcript variant 1, non-coding RNA"	Chr7	 99936688	 99937392	+	101752399	NR_036569.1	NA	NA	NA	"hg19_refFlat_LOC100289561:range=chr7:102006509-1020209875'pad=0,hg19_refFlat_LOC100289561:range=chr7:102006509-1020209875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_7346_PI429285431	1.7601446	A	1.2657664	A	1.40871347030198	0	lncRNA	8984-1_{1..330}	"transcript_id ""ENST00000365042.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000365042.1"" | genecode_v17"	chrX	144138628	144138957	+	ENSG00000201912.1	ENST00000365042.1	RN7SKP189	RN7SKP189-201	NA	NA	NA	inter
CUST_29460_PI429285431	1.0974828	A	0.96155745	A	1.09879736055387	0	lncRNA	31218-1_{1..479}	n332867|AF085935|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066814|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066814|-1.2392400|-0.3673795	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332867|AF085935|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066814|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066814|-1.2392400|-0.3673795	chrX	133031470	133031948	+	NA	NA	NA	NA	GPC3	NA	chrX:133021470-133041949	inner
CUST_23001_PI429285431	5.997589	P	6.523559	P	0.694492009287749	0	lncRNA	24575-1_{1..799}	lnc-MPDZ-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MPDZ-1:1	chr9	 12814292	 12815090	-	lnc-MPDZ-1	lnc-MPDZ-1:1	ENSG00000235448.1	RP11-3L8.3	C9orf150	NA	chr9:12804292-12823059	inner
CUST_21298_PI429285431	0.9153722	A	0.9132652	A	1.00146152810214	0	lncRNA	22923-1_{1..603}	lnc-DERA-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DERA-2:1	chr12	 16726445	 16727047	+	lnc-DERA-2	lnc-DERA-2:1	ENSG00000256564.1	RP11-424M22.3	LMO3	NA	chr12:16716445-16736874	inner
LNCA_21_P0011188	1.423894	A	2.4578142	A	0.488381277638445	0	lncRNA	ENST00000438352	NA	NA	NA	NA	XLOC_l2_004010	NA	ENST00000438352	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004010), lincRNA [TCONS_l2_00007562]"	chr13:63306128-63306069	hs|13q21.31	Agilent_HUMAN_G3V2	ENST00000438352	ENST00000438352	chr13	 63306069	 63306128	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41636_PI429285431	0.9167375	A	0.9094179	A	1.00508645240295	0	lncRNA	43031-1_{1..79}	ENST00000458843 ncrna:miRNA chromosome:GRCh37:X:49775279:49775357:1 gene:ENSG00000239057 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000458843 ncrna:miRNA chromosome:GRCh37:X:49775279:49775357:1 gene:ENSG00000239057 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 49775279	 49775357	+	ENSG00000239057	ENST00000458843	NA	NA	CLCN5	NA	chrX:49765279-49785357	inner
CUST_24890_PI429285431	0.91010493	A	0.9061547	A	1.00274184278129	0	lncRNA	26431-1_{1..732}	lnc-WDR72-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR72-1:2	chr15	 54267015	 54267746	-	lnc-WDR72-1	lnc-WDR72-1:2	ENSG00000259669.1	RP11-643A5.2	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10"	NA	inter
CUST_31149_PI429285431	2.7276158	A	3.0335507	A	0.808917849051334	0	lncRNA	32944-1_{1..381}	n337478|EF103916|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394875|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394875|0.7472230|-0.0467747	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337478|EF103916|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394875|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394875|0.7472230|-0.0467747	chr22	 19948784	 19949164	+	NA	NA	NA	NA	COMT	NA	chr22:19938784-19957498	inner
CUST_49881_PI429285431	7.93855	P	7.7728424	P	1.12171611229115	0	lncRNA	53632-1_{1..835}	hg19_lincRNAsTranscripts_TCONS_l2_00026052 range=chr7:76644856-76673095 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026052 range=chr7:76644856-76673095 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 76644856	 76645690	+	NA	NA	NA	NA	LOC100505767	NA	chr7:76682095-76683095	inter
CUST_2654_PI429285431	3.4175344	P	3.3680274	P	1.03491121193551	0	lncRNA	2640-1_{1..444}	"transcript_id ""ENST00000454411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454411.1"" | genecode_v17"	chr6	143109260	143109703	+	ENSG00000237851.1	ENST00000454411.1	RP1-67K17.4	RP1-67K17.4-001	HIVEP2	NA	chr6:143099260-143125223	inner
CUST_20712_PI429285431	0.9738889	A	0.9268143	A	1.03316781014957	0	lncRNA	22347-1_{1..783}	lnc-BACH1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-BACH1-1:2	chr21	 30660305	 30661087	+	lnc-BACH1-1	lnc-BACH1-1:2	ENSG00000215533.4	LINC00189	BACH1	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr21:30650305-30670526"	NA	inter
CUST_13257_PI429285431	6.242965	P	6.393712	P	0.900783933086101	0	lncRNA	14887-1_{1..739}	lnc-ZNF793-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF793-1:2	chr19	 38040999	 38041737	+	lnc-ZNF793-1	lnc-ZNF793-1:2	XLOC_013064	linc-ZNF540	ZNF793	NA	chr19:38030999-38034239	inter
CUST_16598_PI429285431	4.6295185	P	4.666648	P	0.974592145079348	0	lncRNA	18299-1_{1..741}	lnc-USP35-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP35-1:3	chr11	 77852552	 77853292	+	lnc-USP35-1	lnc-USP35-1:3	XLOC_009224	linc-USP35	ALG8	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90chr11:77842552-77850699"	NA	inter
CUST_18921_PI429285431	9.797267	P	10.029279	P	0.851446625585555	0	lncRNA	20612-1_{1..1595}	lnc-CADPS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CADPS-1:1	chr3	 63264743	 63266337	-	lnc-CADPS-1	lnc-CADPS-1:1	ENSG00000256819	AC099545.2	SYNPR	NA	chr3:63254743-63276190	inner
CUST_51121_PI429285431	3.2576804	P	3.7971404	P	0.688028389546176	0	lncRNA	54756-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00007025 range=chr13:114053727-114064046 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007025 range=chr13:114053727-114064046 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	114053727	114056726	+	NA	NA	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20"	NA	inter
CUST_37333_PI429285431	4.8793545	P	4.990686	P	0.925733284675512	0	lncRNA	38438-1_{1..368}	n345775|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1324|NULL|-1.3224500|-0.1287438	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345775|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1324|NULL|-1.3224500|-0.1287438	chr11	   131475	   131842	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24187_PI429285431	6.4796643	P	6.753124	P	0.827333152837287	0	lncRNA	25738-1_{1..242}	lnc-ANXA8L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANXA8L2-1:1	chr10	 47747025	 47747266	+	lnc-ANXA8L2-1	lnc-ANXA8L2-1:1	ENSG00000244599.1	C10orf43	ANXA8L2	NA	chr10:47746920-47757200	inner
CUST_52175_PI429285431	9.843037	P	10.144105	P	0.811651323695467	0	lncRNA	55696-1_{1..592}	hg19_lincRNAsTranscripts_TCONS_l2_00017981 range=chr22:24644741-24645665 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017981 range=chr22:24644741-24645665 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 24644741	 24645332	-	NA	NA	NA	NA	SPECC1L	NA	chr22:24653368-24655665	inter
CUST_1523_PI429285431	0.96947914	A	0.92605174	A	1.03055921270667	0	lncRNA	1510-1_{1..430}	"transcript_id ""ENST00000488287.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000488287.1"" | genecode_v17"	chr3	162845711	162846140	-	ENSG00000241369.1	ENST00000488287.1	CT64	CT64-009	NA	NA	NA	inter
CUST_39864_PI429285431	15.215004	P	15.471345	P	0.837208578830994	0	lncRNA	40762-1_{1..1614}	n406526|NR_024038|lncRNA|Homosapiens||RefGeneNoncode|NR_024038||3.9871400|-0.1009315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406526|NR_024038|lncRNA|Homosapiens||RefGeneNoncode|NR_024038||3.9871400|-0.1009315	chr22	 37415701	 37417314	+	NA	NA	NA	NA	MPST	NA	chr22:37415702-37425863	inner
CUST_2316_PI429285431	5.005314	P	5.0215282	M	0.988824092666234	0	lncRNA	2308-1_{1..584}	"transcript_id ""ENST00000515822.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515822.1"" | genecode_v17"	chr5	114423589	114424172	-	ENSG00000250242.1	ENST00000515822.1	RP11-438C19.1	RP11-438C19.1-001	NA	NA	NA	inter
CUST_39716_PI429285431	0.9144685	A	1.2620622	A	0.785893813399595	0	lncRNA	40650-1_{1..2231}	n405637|NR_002804|lncRNA|Homosapiens||RefGeneNoncode|NR_002804||5.0586900|-0.1487285	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405637|NR_002804|lncRNA|Homosapiens||RefGeneNoncode|NR_002804||5.0586900|-0.1487285	chr19	 51670584	 51672814	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9458_PI429285431	0.9283312	A	0.9468865	A	0.987220802449763	0	lncRNA	10963-1_{1..513}	lnc-TSPAN12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSPAN12-2:1	chr7	119867133	119867645	-	lnc-TSPAN12-2	lnc-TSPAN12-2:1	XLOC_006582	linc-CTTNBP2-6	NA	NA	NA	inter
CUST_18874_PI429285431	2.580576	A	2.4763508	A	1.0749169507976	0	lncRNA	20567-1_{1..572}	lnc-JPH4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JPH4-1:1	chr14	 24198787	 24199358	-	lnc-JPH4-1	lnc-JPH4-1:1	ENSG00000258464	RP11-388E23.2	NA	NA	NA	inter
CUST_22692_PI429285431	6.264821	P	5.640605	P	1.5413729734814	0	lncRNA	24275-1_{1..514}	lnc-ZNF207-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF207-2:1	chr17	 30687617	 30688130	+	lnc-ZNF207-2	lnc-ZNF207-2:1	ENSG00000265794.1	RP11-227G15.3	ZNF207	NA	chr17:30677617-30697468	inner
CUST_1380_PI429285431	5.308181	P	5.529851	P	0.857572174033627	0	lncRNA	1368-1_{1..458}	"transcript_id ""ENST00000469178.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000469178.1"" | genecode_v17"	chr3	 72201910	 72202367	+	ENSG00000243083.1	ENST00000469178.1	LINC00870	LINC00870-003	NA	NA	NA	inter
CUST_34781_PI429285431	5.701207	P	3.2359989	P	5.52206588061718	0	lncRNA	36218-1_{1..2271}	n341688|AK023620|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4159|NULL|-1.2753100|-0.4113083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341688|AK023620|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4159|NULL|-1.2753100|-0.4113083	chr9	 37865022	 37867292	+	NA	NA	NA	NA	DCAF10	NA	chr9:37855022-37867666	inner
CUST_2215_PI429285431	2.3788905	A	2.2183905	A	1.11767442739528	0	lncRNA	2207-1_{1..930}	"transcript_id ""ENST00000509506.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509506.1"" | genecode_v17"	chr5	 82061223	 82062152	+	ENSG00000249100.1	ENST00000509506.1	CTD-2218K11.2	CTD-2218K11.2-001	NA	NA	NA	inter
CUST_26345_PI429285431	6.812816	P	6.9138703	P	0.932351394035449	0	lncRNA	27852-1_{1..572}	lnc-TRPV2-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRPV2-1:13	chr17	 16381736	 16382307	+	lnc-TRPV2-1	lnc-TRPV2-1:13	ENSG00000175061.10	C17orf76-AS1	C17orf76	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40chr17:16371736-16391992"	NA	inner
CUST_34200_PI429285431	4.4406877	P	4.7536187	P	0.805004637782394	0	lncRNA	35715-1_{1..259}	n341055|U56857|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3521|NULL|-1.1437600|-0.1741150	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341055|U56857|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3521|NULL|-1.1437600|-0.1741150	chr11	 67429962	 67430220	+	NA	NA	NA	NA	ALDH3B2	NA	chr11:67429633-67440223	inner
CUST_51498_PI429285431	1.0706061	A	0.9219357	A	1.1085473544892	0	lncRNA	55074-1_{1..258}	hg19_lincRNAsTranscripts_TCONS_l2_00009830 range=chr16:73453995-73455027 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009830 range=chr16:73453995-73455027 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 73453995	 73454252	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13779_PI429285431	0.9203906	A	0.91636866	A	1.00279168588924	0	lncRNA	15422-1_{1..3000}	lnc-RP6-24A23.6.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP6-24A23.6.1-1:1	chrX	107966232	107969231	-	lnc-RP6-24A23.6.1-1	lnc-RP6-24A23.6.1-1:1	XLOC_008207	linc-COL4A6	IRS4	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90chrX:107975727-107978338"	NA	inter
LNCA_21_P0014245	0.9652862	A	0.9269872	A	1.02690235021342	0	lncRNA	ENST00000391437	XR_109003	XR_109003	NA	Hs.146539	DKFZp667F0711	NA	ENST00000391437	THC2624450	NA	"PREDICTED: Homo sapiens hypothetical protein DKFZp667F0711 (DKFZp667F0711), miscRNA [XR_109003]"	chr10:6392769-6392828	hs|10p15.1	Agilent_HUMAN_G3V2	ENST00000391437	ENST00000391437	chr10	  6392769	  6392828	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30010_PI429285431	2.490935	A	3.005439	A	0.700033563670974	0	lncRNA	31778-1_{1..299}	n334438|U09784|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000217935|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000217935|1.6698700|-0.1024421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334438|U09784|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000217935|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000217935|1.6698700|-0.1024421	chr1	201021738	201022036	-	NA	NA	NA	NA	CACNA1S	NA	chr1:201011738-201033701	inner
CUST_29196_PI429285431	0.9119476	A	0.9024659	A	1.00659385800906	0	lncRNA	30943-1_{1..379}	n326713|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000004980|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000004980|-1.2370500|-0.2240908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326713|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000004980|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000004980|-1.2370500|-0.2240908	chr1	  6710173	  6710551	+	NA	NA	NA	NA	DNAJC11	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80chr1:6700173-6722659"	NA	inner
CUST_48060_PI429285431	5.4731016	P	5.3008413	P	1.1268225184749	0	lncRNA	51937-1_{1..1266}	"gi|410170073|ref|XR_172451.1| PREDICTED: Homo sapiens all-trans-retinol 13,14-reductase-like (LOC100996506), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170073|ref|XR_172451.1| PREDICTED: Homo sapiens all-trans-retinol 13,14-reductase-like (LOC100996506), misc_RNA"	NA	NA	NA	NA	NA	XR_172451.1	NA	NA	NA	NA	NA	Unknown
CUST_4056_PI429285431	3.3425436	P	3.5155988	P	0.886962367793263	0	lncRNA	4018-1_{1..574}	"transcript_id ""ENST00000541293.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000541293.1"" | genecode_v17"	chr11	 94375096	 94375669	+	ENSG00000255666.1	ENST00000541293.1	RP11-867G2.6	RP11-867G2.6-001	NA	NA	NA	inter
CUST_25097_PI429285431	5.2304688	P	4.9092035	P	1.24942586388397	0	lncRNA	26634-1_{1..478}	lnc-GS1-211B7.1.1-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GS1-211B7.1.1-1:11	chr8	 30623743	 30624220	+	lnc-GS1-211B7.1.1-1	lnc-GS1-211B7.1.1-1:11	ENSG00000104691.10	UBXN8	UBXN8	NA	chr8:30613743-30624522	inner
CUST_25801_PI429285431	0.9235642	A	1.8068684	A	0.542124382530737	0	lncRNA	27322-1_{1..563}	lnc-CCDC39-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CCDC39-1:1	chr3	180319635	180320197	-	lnc-CCDC39-1	lnc-CCDC39-1:1	ENSG00000239774.1	RP11-496B10.3	TTC14	NA	chr3:180319918-180328918	inter
CUST_21665_PI429285431	1.2970047	A	1.3629001	A	0.955352199958422	0	lncRNA	23275-1_{1..664}	lnc-ACOX3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACOX3-2:1	chr4	  8456308	  8456971	-	lnc-ACOX3-2	lnc-ACOX3-2:1	ENSG00000251186.1	RP11-689P11.3	METTL19	"hg19_refFlat_TRMT44:range=chr4:8442550-84777285'pad=0,hg19_refFlat_TRMT44:range=chr4:8442550-84777285'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00chr4:8446308-8466669"	NA	inner
CUST_49428_PI429285431	6.0927534	P	6.7466965	P	0.635540909939425	0	lncRNA	53231-1_{1..554}	hg19_lincRNAsTranscripts_TCONS_l2_00022659 range=chr5:177366580-177384735 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022659 range=chr5:177366580-177384735 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	177366580	177367133	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13789_PI429285431	0.9124863	A	1.2059827	A	0.815922256736161	0	lncRNA	15431-1_{1..642}	lnc-TAOK3-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TAOK3-3:3	chr12	119199397	119200038	-	lnc-TAOK3-3	lnc-TAOK3-3:3	XLOC_010214	linc-TAOK3-3	NA	NA	NA	inter
CUST_17627_PI429285431	1.0903344	A	0.9349341	A	1.11373059864431	0	lncRNA	19352-1_{1..859}	lnc-ETAA1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ETAA1-4:2	chr2	 67825874	 67826732	+	lnc-ETAA1-4	lnc-ETAA1-4:2	XLOC_001515	linc-PNO1-1	NA	NA	NA	inter
CUST_31724_PI429285431	3.457487	P	3.3017795	A	1.11396777591278	0	lncRNA	33465-1_{1..520}	n338257|BC061902|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|650|NULL|-0.8458520|-0.1215080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338257|BC061902|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|650|NULL|-0.8458520|-0.1215080	chr19	  1989901	  1990420	+	NA	NA	NA	NA	CSNK1G2	"hg19_refFlat_BTBD2:range=chr19:1986487-20157025'pad=0,hg19_refFlat_BTBD2:range=chr19:1986487-20157025'pad=0 3'pad=0 strand=- repeatMasking=none,-97.30chr19:1979901-1981337"	NA	inner
CUST_13697_PI429285431	1.116087	A	1.1949513	A	0.946802683377472	0	lncRNA	15337-1_{1..274}	lnc-ZNF831-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF831-1:1	chr20	 57734707	 57734980	+	lnc-ZNF831-1	lnc-ZNF831-1:1	XLOC_013588	linc-ZNF831	NA	NA	NA	inter
LNCA_21_P0009000	6.2212663	P	6.2699876	P	0.966792844183379	0	lncRNA	TCONS_00024546	NA	NA	NA	NA	XLOC_011856	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011856), lincRNA [TCONS_00024546]"	chr16:2917486-2916823	hs|16p13.3	Agilent_HUMAN_G3V2	TCONS_00024546	TCONS_00024546	chr16	  2916823	  2917486	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24968_PI429285431	0.90964687	A	0.9021989	A	1.00517588827442	0	lncRNA	26506-1_{1..427}	lnc-TP53BP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TP53BP1-1:1	chr15	 43691838	 43692264	-	lnc-TP53BP1-1	lnc-TP53BP1-1:1	ENSG00000260821.1	RP11-355D13.3	TP53BP1	"hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30chr15:43699412-43702068"	NA	inter
CUST_11487_PI429285431	2.350633	A	1.3984287	A	1.93482663056802	0	lncRNA	13055-1_{1..2432}	lnc-FAM71F2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM71F2-1:1	chr7	128278828	128281259	+	lnc-FAM71F2-1	lnc-FAM71F2-1:1	XLOC_006242	linc-FAM71F2-1	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10"	NA	inter
CUST_38872_PI429285431	0.9087624	A	1.0767102	A	0.890107938807045	0	lncRNA	39859-1_{1..708}	n384757|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003luo.1||-0.2258370|-0.2683697	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384757|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003luo.1||-0.2258370|-0.2683697	chr5	151167423	151168130	+	NA	NA	NA	NA	G3BP1	NA	chr5:151157423-151178131	inner
CUST_11514_PI429285431	6.0209737	P	5.9822507	P	1.02720419542131	0	lncRNA	13084-1_{1..325}	lnc-AC136604.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC136604.1-1:4	chr5	179091324	179091648	+	lnc-AC136604.1-1	lnc-AC136604.1-1:4	XLOC_004677	linc-CANX-1	CBY3	NA	chr5:179081324-179101431	inter
CUST_27465_PI429285431	3.7933028	P	3.3587024	A	1.3515364304382	0	lncRNA	29037-1_{1..1016}	n324643|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331465|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331465|0.3836810|-0.2571187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324643|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331465|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331465|0.3836810|-0.2571187	chr22	 48769919	 48770934	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20"	NA	inter
CUST_3226_PI429285431	0.9247932	A	0.90798444	A	1.0117190812193	0	lncRNA	3205-1_{1..478}	"transcript_id ""ENST00000523385.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523385.1"" | genecode_v17"	chr8	 93433078	 93433555	-	ENSG00000253749.1	ENST00000523385.1	RP11-700E23.1	RP11-700E23.1-001	NA	NA	NA	inter
CUST_46005_PI429285431	0.9166424	A	0.9099	A	1.00468441326948	0	lncRNA	50289-2_{3001..3784}	"gi|343790990|ref|NR_045012.1| Homo sapiens LIM domain only 3 (rhombotin-like 2) (LMO3), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|343790990|ref|NR_045012.1| Homo sapiens LIM domain only 3 (rhombotin-like 2) (LMO3), transcript variant 8, non-coding RNA"	Chr12	 16704306	 16705089	-	55885	NR_045012.1	NA	NA	NA	NA	NA	inter
CUST_50962_PI429285431	0.9076746	A	0.9262441	A	0.987211085589299	0	lncRNA	54603-1_{1..342}	hg19_lincRNAsTranscripts_TCONS_l2_00005765 range=chr12:76961163-77009334 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005765 range=chr12:76961163-77009334 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 76961163	 76961504	+	NA	NA	NA	NA	OSBPL8	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70chr12:76951163-76953589"	NA	inter
CUST_37301_PI429285431	2.5150363	A	1.905342	A	1.52593583638513	0	lncRNA	38410-1_{1..3000}	n345745|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1294|NULL|-1.3244600|-0.3196945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345745|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1294|NULL|-1.3244600|-0.3196945	chr7	 75705817	 75708816	-	NA	NA	NA	NA	MDH2	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70chr7:75695817-75695931"	NA	inter
CUST_51438_PI429285431	1.0841401	A	1.0915034	A	0.994909151880663	0	lncRNA	55015-1_{1..502}	hg19_lincRNAsTranscripts_TCONS_l2_00010069 range=chr16:26596055-26606756 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010069 range=chr16:26596055-26606756 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 26596055	 26596556	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38574_PI429285431	2.704995	A	3.3499088	P	0.639531001018484	0	lncRNA	39586-1_{1..1496}	n383552|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002qbv.2||1.7524900|-0.1597664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383552|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002qbv.2||1.7524900|-0.1597664	chr19	 54001690	 54003185	+	NA	NA	NA	NA	ZNF331	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00chr19:53999141-54017937"	NA	inter
LNCA_21_P0002649	0.95773965	A	0.9172971	A	1.02842925129752	0	lncRNA	TCONS_00005101	NA	NA	NA	NA	XLOC_002010	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002010), lincRNA [TCONS_00005101]"	chr2:20726100-20726041	hs|2p24.1	Agilent_HUMAN_G3V2	TCONS_00005101	TCONS_00005101	chr2	 20726041	 20726100	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50101_PI429285431	1.3389494	A	1.8463818	A	0.703473313263882	0	lncRNA	53833-1_{1..752}	hg19_lincRNAsTranscripts_TCONS_l2_00029176 range=chr9:2530925-2621526 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029176 range=chr9:2530925-2621526 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	  2530925	  2531676	-	NA	NA	NA	NA	VLDLR	NA	chr9:2621793-2631526	inter
CUST_50815_PI429285431	0.9111038	A	1.1197016	A	0.865377910298178	0	lncRNA	54466-1_{1..578}	hg19_lincRNAsTranscripts_TCONS_l2_00005006 range=chr11:50239002-50244380 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005006 range=chr11:50239002-50244380 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	 50239002	 50239579	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50180_PI429285431	6.1025376	P	6.0814853	P	1.01469933038589	0	lncRNA	53906-1_{1..549}	hg19_lincRNAsTranscripts_TCONS_l2_00029250 range=chr9:34665633-34666315 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029250 range=chr9:34665633-34666315 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 34665633	 34666181	-	NA	NA	NA	NA	IL11RA	NA	chr9:34655633-34661884	inter
CUST_27253_PI429285431	5.2098675	P	4.986048	P	1.16782127577216	0	lncRNA	28803-1_{1..2305}	n324396|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000125838|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000125838|-0.0439528|-0.3556832	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324396|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000125838|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000125838|-0.0439528|-0.3556832	chr6	132264795	132267099	+	NA	NA	NA	NA	CTGF	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10chr6:132269316-132272518"	NA	inner
CUST_40682_PI429285431	0.9196509	A	0.9027259	A	1.01180060015469	0	lncRNA	41417-1_{1..600}	n410239|NR_037171_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037171_8||0.3166650|-0.2605422	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410239|NR_037171_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037171_8||0.3166650|-0.2605422	chr6	  3591245	  3591844	-	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30"	NA	inter
CUST_44563_PI429285431	3.6218588	P	3.5789149	P	1.03021389240032	0	lncRNA	49145-1_{1..1346}	"gi|397139103|ref|XR_158793.1| PREDICTED: Homo sapiens uncharacterized LOC100996319, transcript variant 2 (LOC100996319), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139103|ref|XR_158793.1| PREDICTED: Homo sapiens uncharacterized LOC100996319, transcript variant 2 (LOC100996319), misc_RNA"	NA	NA	NA	NA	NA	XR_158793.1	NA	NA	NA	NA	NA	Unknown
CUST_7407_PI429285431	7.736236	P	7.818204	P	0.944767996389538	0	lncRNA	9050-1_{1..2863}	lnc-SPRYD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SPRYD3-1:1	chr12	 53448105	 53450967	-	lnc-SPRYD3-1	lnc-SPRYD3-1:1	ENSG00000247550	ENSG00000257337.1	SPRYD3	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TENC1:range=chr12:53443970-534576665'pad=0,hg19_refFlat_TENC1:range=chr12:53443970-534576665'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.10;hg19_refFlat_TENC1:range=chr12:53448076-534576665'pad=0,hg19_refFlat_TENC1:range=chr12:53448076-534576665'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TENC1:range=chr12:53442928-534576665'pad=0,hg19_refFlat_TENC1:range=chr12:53442928-534576665'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr12:53458100-53458222"	NA	inner
CUST_9757_PI429285431	0.9203587	A	0.90872025	A	1.00809978600643	0	lncRNA	11274-1_{1..284}	lnc-COL6A6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL6A6-1:1	chr3	130278968	130279251	+	lnc-COL6A6-1	lnc-COL6A6-1:1	XLOC_002825	linc-COL6A6	COL6A6	NA	chr3:130279178-130289028	inter
CUST_48471_PI429285431	2.703715	A	2.5032206	A	1.14909207215273	0	lncRNA	52323-1_{1..1221}	hg19_lincRNAsTranscripts_TCONS_l2_00001808 range=chr1:224148835-224174312 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001808 range=chr1:224148835-224174312 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	224148835	224150055	-	NA	NA	NA	NA	LOC441124	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80chr1:224138835-224141141"	NA	inter
CUST_13867_PI429285431	0.9281134	A	1.8487071	A	0.528291572211235	0	lncRNA	15511-1_{1..271}	lnc-PIEZO2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIEZO2-1:1	chr18	 11159656	 11159926	-	lnc-PIEZO2-1	lnc-PIEZO2-1:1	XLOC_012767	linc-FAM38B-3	NA	NA	NA	inter
CUST_15213_PI429285431	1.6922615	A	2.116766	A	0.745094593657797	0	lncRNA	16883-1_{1..615}	lnc-SH3BGRL2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SH3BGRL2-1:6	chr6	 80251234	 80251848	+	lnc-SH3BGRL2-1	lnc-SH3BGRL2-1:6	XLOC_005361	linc-SH3BGRL2-1	LCA5	NA	chr6:80241234-80247147	inter
CUST_45712_PI429285431	0.8978745	A	1.0629723	A	0.891868057818631	0	lncRNA	50079-2_{3001..4127}	"gi|375298751|ref|NR_046332.1| Homo sapiens BR serine/threonine kinase 2 (BRSK2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375298751|ref|NR_046332.1| Homo sapiens BR serine/threonine kinase 2 (BRSK2), transcript variant 6, non-coding RNA"	Chr11	  1434673	  1435799	+	9024	NR_046332.1	NA	NA	NA	NA	NA	inter
CUST_51225_PI429285431	3.39759	P	3.5282414	P	0.913418933777141	0	lncRNA	54843-1_{1..471}	hg19_lincRNAsTranscripts_TCONS_l2_00008917 range=chr15:22448604-22466833 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008917 range=chr15:22448604-22466833 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 22448604	 22449074	-	NA	NA	NA	NA	LOC642131	NA	chr15:22471454-22473353	inter
CUST_2743_PI429285431	1.1701488	A	1.6410965	A	0.721490498139906	0	lncRNA	2727-1_{1..433}	"transcript_id ""ENST00000453798.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453798.1"" | genecode_v17"	chr7	  1306989	  1307421	+	ENSG00000233082.1	ENST00000453798.1	AC073094.4	AC073094.4-001	NA	NA	NA	inter
CUST_6775_PI429285431	6.2525573	P	6.868845	P	0.652347370774907	0	lncRNA	6722-1_{1..716}	"transcript_id ""ENST00000435697.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435697.1"" | genecode_v17"	chr21	 17791752	 17792467	+	ENSG00000215386.6	ENST00000435697.1	LINC00478	LINC00478-008	NA	NA	NA	inter
CUST_45550_PI429285431	6.597057	P	7.0396023	P	0.735835252541543	0	lncRNA	49950-1_{1..659}	"gi|397139362|ref|XR_158862.1| PREDICTED: Homo sapiens uncharacterized LOC100996668 (LOC100996668), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139362|ref|XR_158862.1| PREDICTED: Homo sapiens uncharacterized LOC100996668 (LOC100996668), misc_RNA"	Chr10	 31644073	 31644731	+	100996668	XR_158862.2	NA	NA	NA	NA	NA	inter
CUST_50104_PI429285431	4.2782016	P	4.55966	P	0.822758881431604	0	lncRNA	53834-3_{6001..8447}	hg19_lincRNAsTranscripts_TCONS_l2_00028605 range=chr9:3663780-3694788 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028605 range=chr9:3663780-3694788 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	  3669780	  3672226	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50"	NA	inter
CUST_27178_PI429285431	0.91516775	A	0.91694134	A	0.998771396444128	0	lncRNA	28718-1_{1..579}	n324307|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043124|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043124|1.1789100|-0.3178961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324307|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043124|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043124|1.1789100|-0.3178961	chr6	167570985	167571563	-	NA	NA	NA	NA	GPR31	NA	chr6:167570360-167571319	inner
CUST_41718_PI429285431	0.92103755	A	0.91489863	A	1.00426424120194	0	lncRNA	43236-1_{1..75}	ENST00000583014 ncrna:miRNA chromosome:GRCh37:8:43221856:43221930:-1 gene:ENSG00000264094 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583014 ncrna:miRNA chromosome:GRCh37:8:43221856:43221930:-1 gene:ENSG00000264094 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 43221856	 43221930	-	ENSG00000264094	ENST00000583014	NA	NA	POTEA	NA	chr8:43211856-43218328	inter
CUST_13972_PI429285431	0.9502176	A	0.97502613	A	0.982951044095141	0	lncRNA	15617-1_{1..510}	lnc-C3orf30-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C3orf30-3:1	chr3	117512278	117512787	+	lnc-C3orf30-3	lnc-C3orf30-3:1	XLOC_002774	linc-C3orf30-2	NA	NA	NA	inter
CUST_175_PI429285431	2.341908	A	2.7692246	A	0.7436436704106	0	lncRNA	165-1_{1..1083}	"transcript_id ""ENST00000417884.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417884.1"" | genecode_v17"	chr1	 20480831	 20481913	+	ENSG00000227066.1	ENST00000417884.1	RP3-340N1.2	RP3-340N1.2-001	PLA2G2C	NA	chr1:20490484-20497061	inter
CUST_23806_PI429285431	3.8333285	P	4.2952514	P	0.726017938510045	0	lncRNA	25371-1_{1..2910}	lnc-COPZ2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COPZ2-1:3	chr17	 46122503	 46125412	-	lnc-COPZ2-1	lnc-COPZ2-1:3	ENSG00000263412.1	RP5-890E16.2	NFE2L1	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.31;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10chr17:46125686-46135412"	NA	inter
CUST_22095_PI429285431	1.1397357	A	1.7626363	A	0.649364040246149	0	lncRNA	23700-1_{1..298}	lnc-LIF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIF-1:1	chr22	 30603037	 30603334	-	lnc-LIF-1	lnc-LIF-1:1	ENSG00000225676.1	RP3-438O4.4	NA	NA	NA	inter
LNCA_21_P0013814	6.239903	P	5.917664	P	1.25026940778086	0	lncRNA	TCONS_l2_00030483	NA	NA	NA	NA	XLOC_l2_015722	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015722), lincRNA [TCONS_l2_00030483]"	chrX:48239613-48239554	hs|Xp11.23	Agilent_HUMAN_G3V2	TCONS_l2_00030483	TCONS_l2_00030483	chrX	 48239554	 48239613	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43395_PI429285431	8.398418	P	6.9564314	P	2.71694733350595	0	lncRNA	48208-2_{3001..4322}	"gi|374088006|ref|NR_046176.1| Homo sapiens neuroblastoma breakpoint family, member 3 (NBPF3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|374088006|ref|NR_046176.1| Homo sapiens neuroblastoma breakpoint family, member 3 (NBPF3), transcript variant 4, non-coding RNA"	Chr1	 21769583	 21770904	+	84224	NR_046176.2	NA	NA	NA	NA	NA	inter
CUST_48040_PI429285431	2.8285632	A	3.1299067	A	0.811496343894334	0	lncRNA	51920-2_{3001..4646}	"gi|310118202|ref|XR_110620.1| PREDICTED: Homo sapiens uncharacterized LOC100131372 (LOC100131372), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118202|ref|XR_110620.1| PREDICTED: Homo sapiens uncharacterized LOC100131372 (LOC100131372), misc_RNA"	NA	NA	NA	NA	NA	XR_110620.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90"	NA	Unknown
CUST_25193_PI429285431	5.976249	P	6.4939756	P	0.698471618561785	0	lncRNA	26724-1_{1..536}	lnc-POLR2L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POLR2L-1:1	chr11	   832712	   833247	-	lnc-POLR2L-1	lnc-POLR2L-1:1	ENSG00000255108.1	AP006621.8	PNPLA2	"hg19_refFlat_EFCAB4A:range=chr11:828608-8315615'pad=0,hg19_refFlat_EFCAB4A:range=chr11:828608-8315615'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.60;hg19_refFlat_PNPLA2:range=chr11:819719-8248625'pad=0,hg19_refFlat_PNPLA2:range=chr11:819719-8248625'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.80chr11:822712-825573"	NA	inter
CUST_6313_PI429285431	0.97274935	A	1.0146987	A	0.971341596711224	0	lncRNA	6237-1_{1..614}	"transcript_id ""ENST00000588923.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588923.1"" | genecode_v17"	chr19	  4770161	  4770774	+	ENSG00000176840.7	ENST00000588923.1	MIR7-3HG	MIR7-3HG-008	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60"	NA	inter
LNCA_33_P3388771	0.9242228	A	0.91145414	A	1.00888984269446	0	lncRNA	XR_133170	XR_133170	XR_133170	100509175	Hs.369632	LOC100509175	zinc finger protein 726-like	NA	THC2643866	NA	"PREDICTED: Homo sapiens zinc finger protein 726-like (LOC100509175), miscRNA [XR_133170]"	NA	NA	Agilent_HUMAN_G3V2	XR_133170	XR_133170	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18340_PI429285431	2.369641	A	2.3496783	A	1.01393326482525	0	lncRNA	20069-1_{1..2501}	lnc-BTBD17-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-BTBD17-3:2	chr17	 72208663	 72211163	-	lnc-BTBD17-3	lnc-BTBD17-3:2	ENSG00000246731	CTD-2514K5.2	TTYH2	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70chr17:72209696-72219460"	NA	inter
CUST_49840_PI429285431	10.117444	P	9.870374	P	1.18679437988205	0	lncRNA	53598-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00026648 range=chr7:65849505-65866073 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026648 range=chr7:65849505-65866073 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 65852505	 65855504	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60"	NA	inter
CUST_2543_PI429285431	1.7172968	A	2.6864016	A	0.5108229328995	0	lncRNA	2531-1_{1..850}	"transcript_id ""ENST00000453790.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453790.1"" | genecode_v17"	chr6	 53605547	 53606396	-	ENSG00000227885.1	ENST00000453790.1	RP11-79N23.1	RP11-79N23.1-001	NA	NA	NA	inter
CUST_10820_PI429285431	2.1055505	A	1.5683075	A	1.45119661921126	0	lncRNA	12355-1_{1..1009}	lnc-TCF19-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TCF19-1:4	chr6	 31167732	 31168740	+	lnc-TCF19-1	lnc-TCF19-1:4	XLOC_005244	linc-MICA-2	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10"	NA	inter
CUST_10193_PI429285431	7.484416	P	7.136202	P	1.27298374740243	0	lncRNA	11718-1_{1..745}	lnc-CTD-2144E22.5.1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2144E22.5.1-7:1	chr16	 34686182	 34686926	+	lnc-CTD-2144E22.5.1-7	lnc-CTD-2144E22.5.1-7:1	XLOC_011701	linc-ORC6-2	NA	NA	NA	inter
CUST_28576_PI429285431	0.90426975	A	0.8999315	A	1.00301157145334	0	lncRNA	30256-1_{1..886}	n325937|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049008|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049008|-1.2236000|-0.4184094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325937|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049008|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049008|-1.2236000|-0.4184094	chr10	 81576438	 81577323	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001862	0.9252704	A	0.91498816	A	1.00715256392873	0	lncRNA	ENST00000415159	NA	NA	NA	NA	XLOC_001488	NA	ENST00000415159	NA	NA	"BROAD Institute lincRNA (XLOC_001488), lincRNA [TCONS_00002900]"	chr2:59667874-59669278	hs|2p16.1	Agilent_HUMAN_G3V2	ENST00000415159	ENST00000415159	chr2	 59667874	 59669278	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12554_PI429285431	0.9036015	A	1.3168019	A	0.750955643458746	0	lncRNA	14166-1_{1..3000}	lnc-KLF6-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF6-7:2	chr10	  4285696	  4288695	-	lnc-KLF6-7	lnc-KLF6-7:2	XLOC_008700	linc-KLF6-2	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-94.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40"	NA	inter
CUST_34958_PI429285431	6.3799543	P	6.679096	P	0.812735772005363	0	lncRNA	36375-1_{1..2425}	n341878|BC048978|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4358|NULL|3.1323800|-0.2908921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341878|BC048978|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4358|NULL|3.1323800|-0.2908921	chr12	 28341262	 28343686	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16865_PI429285431	4.823838	P	4.9548774	P	0.913173310909321	0	lncRNA	18571-1_{1..424}	lnc-MPPED2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MPPED2-2:1	chr11	 30344286	 30344709	-	lnc-MPPED2-2	lnc-MPPED2-2:1	XLOC_009402	linc-KCNA4-3	C11orf46	NA	chr11:30344649-30354533	inter
CUST_12127_PI429285431	2.6205552	A	3.022286	A	0.756949626490804	0	lncRNA	13724-1_{1..324}	lnc-ANKRD34C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD34C-1:1	chr15	 79512993	 79513316	+	lnc-ANKRD34C-1	lnc-ANKRD34C-1:1	XLOC_011325	linc-ANKRD34C-1	NA	NA	NA	inter
CUST_11367_PI429285431	0.9300966	A	0.92937267	A	1.0005019159561	0	lncRNA	12931-1_{1..868}	lnc-TTC27-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-TTC27-1:7	chr2	 33162095	 33162962	+	lnc-TTC27-1	lnc-TTC27-1:7	XLOC_001418	linc-LTBP1	NA	NA	NA	inter
CUST_39556_PI429285431	0.9185213	A	0.92368954	A	0.996424057979494	0	lncRNA	40500-1_{1..2515}	n387498|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011fuo.1||-1.3602300|-0.3213100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387498|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011fuo.1||-1.3602300|-0.3213100	chr6	  1189067	  1191581	+	NA	NA	NA	NA	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-24.10"	NA	inter
CUST_42919_PI429285431	5.968258	P	5.5845118	P	1.30472539922183	0	lncRNA	46023-1_{1..80}	ENST00000363024 ncrna:snoRNA chromosome:GRCh37:4:111354265:111354344:-1 gene:ENSG00000199894 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363024 ncrna:snoRNA chromosome:GRCh37:4:111354265:111354344:-1 gene:ENSG00000199894 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	111354265	111354344	-	ENSG00000199894	ENST00000363024	NA	NA	NA	NA	NA	inter
CUST_24476_PI429285431	0.93229276	A	1.2954762	A	0.777447176474851	0	lncRNA	26028-1_{1..752}	lnc-FBN1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBN1-3:1	chr15	 48623760	 48624511	-	lnc-FBN1-3	lnc-FBN1-3:1	ENSG00000259488.1	RP11-154J22.1	DUT	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DUT:range=chr15:48623713-486342755'pad=0,hg19_refFlat_DUT:range=chr15:48623713-486342755'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70chr15:48623621-48634053"	NA	inner
CUST_6285_PI429285431	0.89580834	A	0.9261055	A	0.979218581662631	0	lncRNA	6209-1_{1..585}	"transcript_id ""ENST00000587527.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587527.1"" | genecode_v17"	chr18	 77370747	 77371331	+	ENSG00000267409.1	ENST00000587527.1	RP11-567M16.2	RP11-567M16.2-001	NA	NA	NA	inter
LNCA_21_P0005844	0.9394558	A	1.7347629	A	0.576220502878769	0	lncRNA	TCONS_00015023	NA	NA	NA	NA	XLOC_007099	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007099), lincRNA [TCONS_00015023]"	chr8:62729648-62729589	hs|8q12.3	Agilent_HUMAN_G3V2	TCONS_00015023	TCONS_00015023	chr8	 62729589	 62729648	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20255_PI429285431	4.997881	P	5.2178717	P	0.85857097099916	0	lncRNA	21898-1_{1..346}	lnc-AC010536.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AC010536.1-1:1	chr16	 87781183	 87781528	-	lnc-AC010536.1-1	lnc-AC010536.1-1:1	ENSG00000260671.1	RP11-278A23.2	KLHDC4	NA	chr16:87771183-87791312	inner
CUST_30926_PI429285431	5.30747	P	5.4283085	P	0.919652989352233	0	lncRNA	32714-1_{1..647}	n336982|BC107081|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338645|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338645|-1.1544500|-0.2012148	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336982|BC107081|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338645|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338645|-1.1544500|-0.2012148	chr7	149578552	149579198	+	NA	NA	NA	NA	ATP6V0E2	NA	chr7:149570057-149577787	inter
LNCA_21_P0014917	4.6085835	P	4.644539	P	0.975385546879157	0	lncRNA	XR_133091	XR_133091	XR_133091	NA	NA	LOC100507311	uncharacterized LOC100507311	NA	THC2695251	NA	"PREDICTED: Homo sapiens hypothetical LOC100507311 (LOC100507311), miscRNA [XR_133091]"	chr15:96696744-96696685	hs|15q26.2	Agilent_HUMAN_G3V2	XR_133091	XR_133091	chr15	 96696685	 96696744	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002453	0.95883256	A	0.92958754	A	1.02047795732648	0	lncRNA	TCONS_00004286	NA	NA	NA	NA	XLOC_002131	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002131), lincRNA [TCONS_00004286]"	chr2:65197743-65197373	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00004286	TCONS_00004286	chr2	 65197373	 65197743	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9786_PI429285431	2.2462087	A	1.6478844	A	1.51395707354619	0	lncRNA	11302-1_{1..308}	lnc-RNF219-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF219-2:1	chr13	 79414075	 79414382	-	lnc-RNF219-2	lnc-RNF219-2:1	XLOC_010665	linc-RNF219-2	NA	NA	NA	inter
CUST_7032_PI429285431	0.93096626	A	0.9203947	A	1.00735455990938	0	lncRNA	6977-1_{1..550}	"transcript_id ""ENST00000423914.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423914.1"" | genecode_v17"	chrX	 25896456	 25897005	+	ENSG00000233403.1	ENST00000423914.1	RP11-86A5.1	RP11-86A5.1-001	NA	NA	NA	inter
CUST_40028_PI429285431	0.91222703	A	0.91408116	A	0.998715640514651	0	lncRNA	40886-1_{1..1020}	n407205|NR_026671|lncRNA|Homosapiens||RefGeneNoncode|NR_026671||1.8290900|-0.2775688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407205|NR_026671|lncRNA|Homosapiens||RefGeneNoncode|NR_026671||1.8290900|-0.2775688	chr12	  9906734	  9907753	-	NA	NA	NA	NA	CD69	NA	chr12:9905082-9913497	inner
CUST_19735_PI429285431	0.92503774	A	1.8533171	A	0.525484691099048	0	lncRNA	21393-1_{1..451}	lnc-COMMD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-COMMD2-1:1	chr3	149367627	149368077	-	lnc-COMMD2-1	lnc-COMMD2-1:1	ENSG00000241985.1	WWTR1-IT1	WWTR1	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-21.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-18.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50chr3:149357627-149377971"	NA	inner
CUST_27124_PI429285431	0.92289567	A	1.5651287	A	0.640720461933491	0	lncRNA	28659-1_{1..697}	n324239|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326053|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326053|-1.2439200|-0.4092403	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324239|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326053|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326053|-1.2439200|-0.4092403	chr7	 15694527	 15695223	+	NA	NA	NA	NA	MEOX2	NA	chr7:15684527-15711641	inner
CUST_38295_PI429285431	2.1854281	A	1.4457979	A	1.66974778451602	0	lncRNA	39348-1_{1..1547}	n381958|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uhw.2||-1.1402300|-0.2395714	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381958|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uhw.2||-1.1402300|-0.2395714	chr12	129297748	129299294	-	NA	NA	NA	NA	SLC15A4	NA	chr12:129287748-129308541	inner
CUST_33632_PI429285431	0.9169878	A	0.921416	A	0.996935311430009	0	lncRNA	35197-1_{1..319}	n340394|U52837|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2855|NULL|-0.9553000|-0.3425497	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340394|U52837|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2855|NULL|-0.9553000|-0.3425497	chr5	 10676215	 10676533	-	NA	NA	NA	NA	DAP	NA	chr5:10679342-10686535	inter
CUST_4202_PI429285431	0.9292892	A	0.919898	A	1.00653071653814	0	lncRNA	4161-1_{1..559}	"transcript_id ""ENST00000556060.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556060.1"" | genecode_v17"	chr12	 25164349	 25164907	+	ENSG00000258879.1	ENST00000556060.1	RP11-713N11.5	RP11-713N11.5-001	LOC645177	NA	chr12:25157276-25183827	inter
CUST_29562_PI429285431	3.599603	P	3.6784115	P	0.946839304153137	0	lncRNA	31322-1_{1..1178}	n333059|AF248482|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000074978_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000074978_06|2.7681600|-0.2203641	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333059|AF248482|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000074978_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000074978_06|2.7681600|-0.2203641	chrY	 26980078	 26981255	+	NA	NA	NA	NA	DAZ4	NA	chrY:26979967-27009579	inner
CUST_13571_PI429285431	11.059813	P	10.7037735	P	1.27990745635225	0	lncRNA	15212-1_{1..402}	lnc-FAM165B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM165B-1:1	chr21	 35780588	 35780989	+	lnc-FAM165B-1	lnc-FAM165B-1:1	XLOC_013926	linc-CLIC6	NA	NA	NA	inter
CUST_16614_PI429285431	0.92382145	A	1.1319891	A	0.865635967473432	0	lncRNA	18314-1_{1..217}	lnc-CHD9-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD9-4:1	chr16	 52624855	 52625071	+	lnc-CHD9-4	lnc-CHD9-4:1	XLOC_011725	linc-CHD9-3	NA	NA	NA	inter
CUST_15400_PI429285431	0.9057695	A	0.9068477	A	0.999252927907338	0	lncRNA	17085-1_{1..303}	lnc-ADCY2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADCY2-5:2	chr5	  7277743	  7278045	+	lnc-ADCY2-5	lnc-ADCY2-5:2	XLOC_004276	linc-ADCY2-5	NA	NA	NA	inter
CUST_44201_PI429285431	2.8699617	A	3.55963	P	0.619996381241947	0	lncRNA	48855-2_{3001..3746}	"gi|292658759|ref|NR_033427.1| Homo sapiens ADP-ribosylation factor-like 13B (ARL13B), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|292658759|ref|NR_033427.1| Homo sapiens ADP-ribosylation factor-like 13B (ARL13B), transcript variant 5, non-coding RNA"	Chr3	 93701983	 93702728	+	200894	NR_033427.1	NA	NA	NA	NA	NA	inter
CUST_17066_PI429285431	4.0913267	P	3.8103614	P	1.21500756793984	0	lncRNA	18775-1_{1..428}	lnc-NDUFV2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDUFV2-1:2	chr18	  8980616	  8981043	+	lnc-NDUFV2-1	lnc-NDUFV2-1:2	XLOC_012622	linc-NDUFV2	NA	NA	NA	inter
CUST_40634_PI429285431	5.7681785	P	5.9071116	P	0.908190530944401	0	lncRNA	41375-1_{1..687}	n410132|NR_036575|lncRNA|Homosapiens||RefGeneNoncode|NR_036575||3.1486900|-0.0964614	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410132|NR_036575|lncRNA|Homosapiens||RefGeneNoncode|NR_036575||3.1486900|-0.0964614	chr19	 18360759	 18361445	-	NA	NA	NA	NA	PDE4C	NA	chr19:18350759-18359010	inter
CUST_46823_PI429285431	6.2867393	P	6.799355	P	0.700950416365706	0	lncRNA	50963-1_{1..2743}	"gi|217330590|ref|NR_024573.1| Homo sapiens GH3 domain containing (GHDC), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|217330590|ref|NR_024573.1| Homo sapiens GH3 domain containing (GHDC), transcript variant 4, non-coding RNA"	Chr17	 40341105	 40343847	-	84514	NR_024573.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10"	NA	inter
CUST_23707_PI429285431	0.92776513	A	0.91497386	A	1.00890565419823	0	lncRNA	25272-1_{1..303}	lnc-CTD-2547L24.3.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2547L24.3.1-2:1	chr14	 91887293	 91887595	+	lnc-CTD-2547L24.3.1-2	lnc-CTD-2547L24.3.1-2:1	ENSG00000258798.1	RP11-895M11.3	CCDC88C	NA	chr14:91877293-91884188	inter
CUST_47768_PI429285431	1.3003536	A	1.590452	A	0.817846274892007	0	lncRNA	51701-2_{3001..5993}	"gi|385137083|ref|NR_047621.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 51, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137083|ref|NR_047621.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 51, non-coding RNA"	ChrY	 15363259	 15366251	-	7404	NR_047621.1	NA	NA	NA	NA	NA	inter
CUST_8005_PI429285431	0.9284869	A	0.9640829	A	0.975628629988572	0	lncRNA	9616-1_{1..571}	lnc-RASA1-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASA1-7:2	chr5	 88238833	 88239403	+	lnc-RASA1-7	lnc-RASA1-7:2	ENSG00000248309	CTC-454M9.1	NA	NA	NA	inter
CUST_14708_PI429285431	1.2571244	A	0.92780936	A	1.25641671376119	0	lncRNA	16372-1_{1..1936}	lnc-TMPRSS15-9:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMPRSS15-9:3	chr21	 22175313	 22177248	-	lnc-TMPRSS15-9	lnc-TMPRSS15-9:3	XLOC_014019	linc-TMPRSS15-5	NA	NA	NA	inter
CUST_20325_PI429285431	7.954556	P	7.2918067	P	1.5830966099778	0	lncRNA	21968-1_{1..530}	lnc-PKDCC-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PKDCC-3:1	chr2	 41383737	 41384266	+	lnc-PKDCC-3	lnc-PKDCC-3:1	ENSG00000241522.1	AC009223.2	NA	NA	NA	inter
CUST_14419_PI429285431	0.92994416	A	0.9206593	A	1.00645652862681	0	lncRNA	16079-1_{1..228}	lnc-NELL1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NELL1-1:2	chr11	 21839706	 21839933	+	lnc-NELL1-1	lnc-NELL1-1:2	XLOC_009085	linc-ANO5-3	NA	NA	NA	inter
CUST_30568_PI429285431	0.96472377	A	0.96358126	A	1.0007922412427	0	lncRNA	32350-1_{1..249}	n335774|X07853|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321282|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321282|1.1496700|-0.1223532	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335774|X07853|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321282|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321282|1.1496700|-0.1223532	chr1	207286364	207286612	+	NA	NA	NA	NA	C4BPA	NA	chr1:207277607-207297546	inner
CUST_49472_PI429285431	0.9199692	A	0.9148911	A	1.0035260727171	0	lncRNA	53267-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00024547 range=chr6:171045718-171055061 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024547 range=chr6:171045718-171055061 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	171045718	171048717	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00"	NA	inter
CUST_21966_PI429285431	3.3679245	P	3.6284168	P	0.834803005683206	0	lncRNA	23574-1_{1..510}	lnc-BEST4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BEST4-1:2	chr1	 45227752	 45228261	-	lnc-BEST4-1	lnc-BEST4-1:2	ENSG00000225721.1	RP11-269F19.2	KIF2C	"hg19_refFlat_KIF2C:range=chr1:45205605-452328515'pad=0,hg19_refFlat_KIF2C:range=chr1:45205605-452328515'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60chr1:45217752-45233439"	NA	inner
CUST_40395_PI429285431	5.634042	P	5.5203443	P	1.08199790066978	0	lncRNA	41186-1_{1..3000}	n409254|NR_033421|lncRNA|Homosapiens||RefGeneNoncode|NR_033421||5.4596000|-0.2919099	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409254|NR_033421|lncRNA|Homosapiens||RefGeneNoncode|NR_033421||5.4596000|-0.2919099	chr12	 51379774	 51382773	-	NA	NA	NA	NA	SLC11A2	NA	chr12:51373566-51422058	inner
CUST_38803_PI429285431	15.345989	P	13.993544	P	2.55344502758444	0	lncRNA	39796-1_{1..1343}	n384533|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003inj.2||4.7343400|-0.3211689	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384533|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003inj.2||4.7343400|-0.3211689	chr4	154228620	154229962	-	NA	NA	NA	NA	TRIM2	NA	chr4:154218620-154239963	inner
CUST_43425_PI429285431	3.369838	P	3.8089736	P	0.737576399918668	0	lncRNA	48235-2_{3001..4876}	"gi|400154062|ref|NR_073090.1| Homo sapiens MYST/Esa1-associated factor 6 (MEAF6), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|400154062|ref|NR_073090.1| Homo sapiens MYST/Esa1-associated factor 6 (MEAF6), transcript variant 4, non-coding RNA"	Chr1	 37958561	 37960436	-	64769	NR_073090.1	NA	NA	NA	"hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40"	NA	inter
CUST_39952_PI429285431	5.929956	P	6.5060062	P	0.670797770963538	0	lncRNA	40826-1_{1..3000}	n406968|NR_024465|lncRNA|Homosapiens||RefGeneNoncode|NR_024465||5.5672300|-0.1817629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406968|NR_024465|lncRNA|Homosapiens||RefGeneNoncode|NR_024465||5.5672300|-0.1817629	chr16	 30362086	 30365085	-	NA	NA	NA	NA	TBC1D10B	NA	chr16:30368422-30376255	inner
CUST_8919_PI429285431	2.5970473	A	3.0952842	A	0.707971455999574	0	lncRNA	10454-1_{1..560}	lnc-C2orf69-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C2orf69-3:1	chr2	200324366	200324925	+	lnc-C2orf69-3	lnc-C2orf69-3:1	ENSG00000225953	AC017096.1	SATB2	NA	chr2:200314366-200334615	inner
CUST_38647_PI429285431	4.5468397	P	5.207945	P	0.632393612095727	0	lncRNA	39651-1_{1..1666}	n383884|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wvg.3||0.3704580|-0.2285899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383884|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wvg.3||0.3704580|-0.2285899	chr20	 25990434	 25992099	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_5911_PI429285431	1.4996219	A	1.4811989	A	1.01285173322056	0	lncRNA	5842-1_{1..505}	"transcript_id ""ENST00000580960.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580960.1"" | genecode_v17"	chr17	 55849307	 55849811	-	ENSG00000265542.1	ENST00000580960.1	RP11-60A24.3	RP11-60A24.3-002	MRPS23	NA	chr17:55916287-55922110	inter
CUST_50354_PI429285431	9.103357	P	9.052943	P	1.03556204913003	0	lncRNA	54068-1_{1..802}	hg19_lincRNAsTranscripts_TCONS_l2_00029137 range=chr9:139442033-139444191 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029137 range=chr9:139442033-139444191 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	139442033	139442834	+	NA	NA	NA	NA	NOTCH1	NA	chr9:139432033-139440238	inter
CUST_3639_PI429285431	0.9187052	A	1.1026746	A	0.880277684322191	0	lncRNA	3609-1_{1..3000}	"transcript_id ""ENST00000443246.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443246.2"" | genecode_v17"	chr10	 29078117	 29081116	-	ENSG00000235824.2	ENST00000443246.2	LINC00837	LINC00837-001	NA	NA	NA	inter
CUST_20574_PI429285431	0.91685855	A	0.9224758	A	0.996113989158306	0	lncRNA	22215-1_{1..413}	lnc-VCL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VCL-1:1	chr10	 76186390	 76186802	+	lnc-VCL-1	lnc-VCL-1:1	ENSG00000227539.1	RP11-506B4.5	ADK	NA	chr10:76176390-76196461	inner
CUST_48609_PI429285431	3.6742747	P	4.108945	P	0.739862816617976	0	lncRNA	52456-1_{1..780}	hg19_lincRNAsTranscripts_TCONS_l2_00014590 range=chr2:60909746-60924733 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014590 range=chr2:60909746-60924733 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 60909746	 60910525	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29231_PI429285431	3.3127284	P	2.7365444	A	1.49090052275665	0	lncRNA	30982-1_{1..278}	n326762|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007168|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007168|-1.1272400|-0.5028500	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326762|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007168|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007168|-1.1272400|-0.5028500	chr1	   155751	   156028	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8309_PI429285431	10.535803	P	9.420743	P	2.16604017225695	0	lncRNA	9893-1_{1..1625}	lnc-PPA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPA2-1:1	chr4	106406158	106407782	-	lnc-PPA2-1	lnc-PPA2-1:1	ENSG00000245205	ENST00000501580	NA	"hg19_refFlat_EEF1A1:range=chr6:74227533-742297495'pad=0,hg19_refFlat_EEF1A1:range=chr6:74227533-742297495'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70"	NA	inter
CUST_9965_PI429285431	0.91789234	A	0.8979792	A	1.01389843440851	0	lncRNA	11489-1_{1..817}	lnc-PRKRIR-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRKRIR-1:2	chr11	 76155322	 76156138	-	lnc-PRKRIR-1	lnc-PRKRIR-1:2	XLOC_009507	linc-PRKRIR	C11orf30	NA	chr11:76156069-76165704	inter
CUST_47990_PI429285431	5.300182	P	5.164238	P	1.09881156501334	0	lncRNA	51878-1_{1..1953}	"gi|410173062|ref|XR_172112.1| PREDICTED: Homo sapiens uncharacterized LOC101060703 (LOC101060703), partial misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173062|ref|XR_172112.1| PREDICTED: Homo sapiens uncharacterized LOC101060703 (LOC101060703), partial misc_RNA"	NA	NA	NA	NA	NA	XR_172112.1	NA	NA	NA	NA	NA	Unknown
CUST_39921_PI429285431	3.622914	P	3.887795	P	0.832267381051205	0	lncRNA	40799-1_{1..1124}	n406783|NR_024234|lncRNA|Homosapiens||RefGeneNoncode|NR_024234||3.4983100|-0.1342183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406783|NR_024234|lncRNA|Homosapiens||RefGeneNoncode|NR_024234||3.4983100|-0.1342183	chrX	 47001614	 47002737	-	NA	NA	NA	NA	RBM10	NA	chrX:47004617-47014609	inner
CUST_33307_PI429285431	4.969631	P	3.2976706	P	3.18647291963101	0	lncRNA	34890-1_{1..1984}	n340024|AK124480|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2478|NULL|-0.6888600|-0.2570156	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340024|AK124480|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2478|NULL|-0.6888600|-0.2570156	chr10	 49651878	 49653861	-	NA	NA	NA	NA	ARHGAP22	NA	chr10:49654079-49663859	inter
CUST_11645_PI429285431	1.2907751	A	1.4609185	A	0.888754336989537	0	lncRNA	13222-1_{1..436}	lnc-SGCG-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SGCG-3:4	chr13	 23682639	 23683074	+	lnc-SGCG-3	lnc-SGCG-3:4	XLOC_010306	linc-SGCG-3	NA	NA	NA	inter
CUST_20488_PI429285431	0.9095087	A	1.0078028	A	0.934136899381335	0	lncRNA	22131-1_{1..481}	lnc-DPP4-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DPP4-2:3	chr2	162107507	162107987	-	lnc-DPP4-2	lnc-DPP4-2:3	ENSG00000235724.1	AC009299.2	NA	NA	NA	inter
CUST_42226_PI429285431	0.9294016	A	0.9111909	A	1.01270269784138	0	lncRNA	44334-1_{1..80}	ENST00000581881 ncrna:miRNA chromosome:GRCh37:4:40504057:40504136:-1 gene:ENSG00000263642 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581881 ncrna:miRNA chromosome:GRCh37:4:40504057:40504136:-1 gene:ENSG00000263642 gene_biotype:miRNA transcript_biotype:miRNA	chr4	 40504057	 40504136	-	ENSG00000263642	ENST00000581881	NA	NA	RBM47	NA	chr4:40494057-40514136	inner
CUST_6710_PI429285431	0.92857635	A	1.0458043	A	0.921957434455586	0	lncRNA	6658-1_{1..341}	"transcript_id ""ENST00000451960.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451960.1"" | genecode_v17"	chr20	 48785883	 48786223	+	ENSG00000234698.1	ENST00000451960.1	RP11-112L6.2	RP11-112L6.2-002	NA	NA	NA	inter
CUST_39887_PI429285431	0.9101564	A	0.9112866	A	0.999216911830236	0	lncRNA	40775-1_{1..2732}	n406567|NR_024075|lncRNA|Homosapiens||RefGeneNoncode|NR_024075||6.3877700|-0.2145678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406567|NR_024075|lncRNA|Homosapiens||RefGeneNoncode|NR_024075||6.3877700|-0.2145678	chr19	  6952510	  6955241	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7655_PI429285431	0.98082477	A	0.97487366	A	1.00413351462034	0	lncRNA	9287-1_{1..458}	lnc-GADD45A-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-GADD45A-1:6	chr1	 68607108	 68607565	+	lnc-GADD45A-1	lnc-GADD45A-1:6	ENSG00000232284	RP11-518D3.1	WLS	NA	chr1:68597108-68617471	inner
CUST_16414_PI429285431	0.90451753	A	1.0662631	A	0.893942801917429	0	lncRNA	18111-1_{1..701}	lnc-TRIP11-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TRIP11-1:2	chr14	 92516685	 92517385	-	lnc-TRIP11-1	lnc-TRIP11-1:2	XLOC_011104	linc-TRIP11	ATXN3	NA	chr14:92524896-92526990	inter
LNCA_21_P0004330	2.2675254	A	1.8790855	A	1.30897713795731	0	lncRNA	TCONS_00010166	NA	NA	NA	NA	XLOC_004629	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004629), lincRNA [TCONS_00010166]"	chr5:171171816-171171875	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00010166	TCONS_00010166	chr5	171171816	171171875	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11841_PI429285431	5.0910225	P	5.093357	P	0.998383156409201	0	lncRNA	13418-1_{1..1555}	lnc-PDGFB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDGFB-1:1	chr22	 39610788	 39612342	-	lnc-PDGFB-1	lnc-PDGFB-1:1	XLOC_014378	linc-CBX7	PDGFB	"hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-62.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr22:39619685-39620817"	NA	inter
CUST_25327_PI429285431	8.265796	P	8.338682	P	0.950734224118867	0	lncRNA	26859-1_{1..428}	lnc-MRPL48-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPL48-1:1	chr11	 73471856	 73472283	+	lnc-MRPL48-1	lnc-MRPL48-1:1	ENSG00000256034.1	RP11-707G14.1	RAB6A	"hg19_refFlat_WTH3DI:range=chr2:132120529-1321212935'pad=0,hg19_refFlat_WTH3DI:range=chr2:132120529-1321212935'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RAB6C:range=chr2:130737689-1307384535'pad=0,hg19_refFlat_RAB6C:range=chr2:130737689-1307384535'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_RAB6A:range=chr11:73388943-734716805'pad=0,hg19_refFlat_RAB6A:range=chr11:73388943-734716805'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20chr11:73461856-73472201"	NA	inner
CUST_36279_PI429285431	2.968821	P	4.0420294	P	0.475260893330258	0	lncRNA	37515-1_{1..425}	n344809|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_358|NULL|-1.3773600|-0.2661465	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344809|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_358|NULL|-1.3773600|-0.2661465	chr8	103942459	103942883	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30484_PI429285431	9.048638	P	8.838888	P	1.15648776248262	0	lncRNA	32264-1_{1..384}	n335635|CR605031|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000284226|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000284226|-1.3357800|-0.3019050	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335635|CR605031|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000284226|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000284226|-1.3357800|-0.3019050	chr1	229439770	229440153	+	NA	NA	NA	NA	RAB4A	NA	chr1:229429770-229440518	inner
CUST_35002_PI429285431	7.745735	P	7.1530814	P	1.50801794877965	0	lncRNA	36416-1_{1..1772}	n341932|X55077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4413|NULL|5.6502500|-0.0145022	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341932|X55077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4413|NULL|5.6502500|-0.0145022	chr12	 57593140	 57594911	+	NA	NA	NA	NA	LRP1	NA	chr12:57583140-57607142	inner
CUST_24648_PI429285431	0.93087906	A	0.90088296	A	1.02100936563539	0	lncRNA	26197-1_{1..973}	lnc-BMP2K-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-BMP2K-1:8	chr4	 80165838	 80166810	+	lnc-BMP2K-1	lnc-BMP2K-1:8	ENSG00000249307.1	RP11-438E5.1	NA	NA	NA	inter
CUST_23527_PI429285431	0.9283021	A	1.427905	A	0.707301438229258	0	lncRNA	25094-1_{1..571}	lnc-ARHGAP23-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARHGAP23-1:1	chr17	 36758483	 36759053	+	lnc-ARHGAP23-1	lnc-ARHGAP23-1:1	ENSG00000265130.1	CTB-58E17.2	SRCIN1	NA	chr17:36748483-36762183	inner
CUST_9034_PI429285431	8.084106	P	7.8448386	P	1.18039310603943	0	lncRNA	10560-1_{1..1149}	lnc-CCDC54-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CCDC54-2:3	chr3	107045313	107046461	+	lnc-CCDC54-2	lnc-CCDC54-2:3	ENSG00000243701	RP11-446H18.3	CCDC54	NA	chr3:107046680-107055811	inter
CUST_18_PI429285431	4.4703655	P	4.1236086	P	1.27169870226914	0	lncRNA	17-1_{1..734}	"transcript_id ""ENST00000520422.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000520422.1"" | genecode_v17"	chr8	 37278922	 37279655	-	ENSG00000253161.1	ENST00000520422.1	RP11-150O12.1	RP11-150O12.1-004	NA	NA	NA	inter
CUST_23870_PI429285431	6.4544377	P	7.679307	P	0.427836270628724	0	lncRNA	25430-1_{1..163}	lnc-EVX1-13:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EVX1-13:1	chr7	 27135810	 27135972	+	lnc-EVX1-13	lnc-EVX1-13:1	ENSG00000233429.4	HOTAIRM1	HOXA3	NA	chr7:27145809-27145946	inter
CUST_45602_PI429285431	2.1773345	A	2.3505087	A	0.886889210150216	0	lncRNA	49990-1_{1..432}	"gi|333108229|ref|NR_038199.1| Homo sapiens uncharacterized LOC100507027 (M1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|333108229|ref|NR_038199.1| Homo sapiens uncharacterized LOC100507027 (M1), transcript variant 2, non-coding RNA"	Chr10	 61496748	 61497179	-	100507027	NR_038199.1	NA	NA	NA	NA	NA	inter
CUST_29462_PI429285431	2.4549124	A	3.1693406	P	0.609446633003908	0	lncRNA	31220-1_{1..391}	n332871|AF085942|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066821|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066821|1.9925100|-0.2341072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332871|AF085942|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066821|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066821|1.9925100|-0.2341072	chr7	 99661645	 99662035	+	NA	NA	NA	NA	ZNF3	NA	chr7:99661653-99672036	inner
CUST_14455_PI429285431	1.9889867	A	2.7568834	A	0.587273034086146	0	lncRNA	16118-1_{1..264}	lnc-HLTF-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HLTF-2:1	chr3	148173140	148173403	-	lnc-HLTF-2	lnc-HLTF-2:1	XLOC_003276	linc-ZIC4-4	NA	NA	NA	inter
CUST_3458_PI429285431	1.0891215	A	1.4091444	A	0.801057162251948	0	lncRNA	3429-1_{1..662}	"transcript_id ""ENST00000590791.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590791.1"" | genecode_v17"	chr9	 84891964	 84892625	+	ENSG00000228430.4	ENST00000590791.1	RP11-15B24.5	RP11-15B24.5-003	NA	NA	NA	inter
CUST_17601_PI429285431	4.4052052	P	4.647837	P	0.845202066648421	0	lncRNA	19327-1_{1..808}	lnc-POU4F2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POU4F2-1:1	chr4	147559571	147560378	+	lnc-POU4F2-1	lnc-POU4F2-1:1	XLOC_003724	linc-POU4F2-1	POU4F2	NA	chr4:147560045-147563623	inter
CUST_16587_PI429285431	1.206219	A	1.3647008	A	0.895967433829601	0	lncRNA	18288-1_{1..387}	lnc-CMPK2-13:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMPK2-13:7	chr2	  5831107	  5831493	-	lnc-CMPK2-13	lnc-CMPK2-13:7	XLOC_001958	linc-RNASEH1-2	SOX11	NA	chr2:5832799-5841306	inter
CUST_31929_PI429285431	2.751039	A	2.8887522	A	0.908958794599341	0	lncRNA	33657-1_{1..2501}	n338484|AF054995|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|881|NULL|-1.0746700|-0.2271832	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338484|AF054995|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|881|NULL|-1.0746700|-0.2271832	chr1	204988783	204991283	+	NA	NA	NA	NA	NFASC	NA	chr1:204978783-204991950	inner
CUST_47676_PI429285431	5.469018	P	5.9218793	P	0.730592424697186	0	lncRNA	51657-1_{1..542}	"gi|32563531|ref|NR_001533.1| Homo sapiens testis-specific transcript, Y-linked 8 (non-protein coding) (TTTY8), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|32563531|ref|NR_001533.1| Homo sapiens testis-specific transcript, Y-linked 8 (non-protein coding) (TTTY8), non-coding RNA"	ChrY	  9528709	  9529250	+	84673	NR_001533.1	NA	NA	NA	NA	NA	inter
CUST_33033_PI429285431	1.1675364	A	0.9608108	A	1.15406589378522	0	lncRNA	34647-1_{1..1638}	n339720|BC035175|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2165|NULL|5.1157600|-0.2879875	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339720|BC035175|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2165|NULL|5.1157600|-0.2879875	chr20	 51785181	 51786818	-	NA	NA	NA	NA	TSHZ2	NA	chr20:51775181-51806091	inner
CUST_23600_PI429285431	0.9202826	A	0.9176222	A	1.00184575006268	0	lncRNA	25166-1_{1..599}	lnc-B4GALNT3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-B4GALNT3-2:2	chr12	   772483	   773081	+	lnc-B4GALNT3-2	lnc-B4GALNT3-2:2	ENSG00000177406.4	RP11-218M22.1	NINJ2	"hg19_refFlat_NINJ2:range=chr12:674401-7726645'pad=0,hg19_refFlat_NINJ2:range=chr12:674401-7726645'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30chr12:762483-772755"	NA	inner
CUST_5823_PI429285431	2.3874142	A	1.8677065	A	1.43366474818798	0	lncRNA	5751-1_{1..537}	"transcript_id ""ENST00000592117.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592117.1"" | genecode_v17"	chr17	 33730856	 33731392	-	ENSG00000267547.1	ENST00000592117.1	RP11-686D22.4	RP11-686D22.4-001	SLFN12	NA	chr17:33733964-33741392	inter
CUST_34163_PI429285431	8.798649	P	8.791063	P	1.00527206318411	0	lncRNA	35680-2_{3001..4677}	n341007|L25110|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3473|NULL|-1.1143700|-0.1995375	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341007|L25110|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3473|NULL|-1.1143700|-0.1995375	chr11	 32458620	 32460296	+	NA	NA	NA	NA	WT1	"hg19_refFlat_WT1:range=chr11:32410604-324568915'pad=0,hg19_refFlat_WT1:range=chr11:32410604-324568915'pad=0 3'pad=0 strand=- repeatMasking=none,-111.90chr11:32445620-32457081"	NA	inner
LNCA_21_P0007317	0.93027127	A	1.8008311	A	0.546934574446161	0	lncRNA	TCONS_00019572	NA	NA	NA	NA	XLOC_009371	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009371), lincRNA [TCONS_00019572]"	chr11:9776169-9776110	hs|11p15.4	Agilent_HUMAN_G3V2	TCONS_00019572	TCONS_00019572	chr11	  9776110	  9776169	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16904_PI429285431	1.7809134	A	1.4964018	A	1.21799786130215	0	lncRNA	18614-1_{1..459}	lnc-OR2W1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR2W1-1:1	chr6	 29003602	 29004060	-	lnc-OR2W1-1	lnc-OR2W1-1:1	XLOC_005667	linc-ZNF311	LOC100129636	NA	chr6:28994457-29013941	inter
CUST_9366_PI429285431	1.4092108	A	0.90519047	A	1.41816001979893	0	lncRNA	10867-1_{1..263}	lnc-IFI44-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IFI44-2:4	chr1	 79871919	 79872181	+	lnc-IFI44-2	lnc-IFI44-2:4	XLOC_000266	linc-LPHN2-2	NA	NA	NA	inter
CUST_47968_PI429285431	1.027302	A	0.9110925	A	1.08388335081658	0	lncRNA	51859-1_{1..2067}	"gi|410172684|ref|XR_171919.1| PREDICTED: Homo sapiens uncharacterized MGC13053 (MGC13053), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172684|ref|XR_171919.1| PREDICTED: Homo sapiens uncharacterized MGC13053 (MGC13053), misc_RNA"	NA	NA	NA	NA	NA	XR_171919.1	NA	NA	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00"	NA	Unknown
CUST_16609_PI429285431	0.90308857	A	0.9086892	A	0.996125464563289	0	lncRNA	18309-1_{1..555}	lnc-CRH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRH-1:1	chr8	 67098796	 67099350	-	lnc-CRH-1	lnc-CRH-1:1	XLOC_007108	linc-CRH-1	CRH	NA	chr8:67088796-67090846	inter
CUST_25528_PI429285431	7.248185	P	6.9555807	P	1.22484933618673	0	lncRNA	27058-1_{1..383}	lnc-FAM63B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM63B-1:1	chr15	 59186176	 59186558	+	lnc-FAM63B-1	lnc-FAM63B-1:1	ENSG00000225798.1	AC025918.2	SLTM	NA	chr15:59176176-59196281	inner
CUST_26142_PI429285431	3.2362733	P	4.0148773	P	0.582930583558922	0	lncRNA	27653-1_{1..961}	lnc-RP11-116D17.1.1-13:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-116D17.1.1-13:2	chr12	114847271	114848231	+	lnc-RP11-116D17.1.1-13	lnc-RP11-116D17.1.1-13:2	ENSG00000255399.1	RP11-385N17.1	TBX5	NA	chr12:114837271-114846247	inter
CUST_48881_PI429285431	5.549779	P	5.202545	P	1.27211932323702	0	lncRNA	52718-1_{1..980}	hg19_lincRNAsTranscripts_TCONS_l2_00018656 range=chr3:75263634-75264910 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018656 range=chr3:75263634-75264910 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	 75263634	 75264613	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32350_PI429285431	1.9101222	A	3.2611334	P	0.392017183699273	0	lncRNA	34030-1_{1..2060}	n338933|BC038780|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1360|NULL|-0.9177460|-0.2886481	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338933|BC038780|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1360|NULL|-0.9177460|-0.2886481	chr2	105979494	105981553	+	NA	NA	NA	NA	FHL2	NA	chr2:105977283-106005298	inner
CUST_8364_PI429285431	3.300705	A	4.074383	P	0.584924368711967	0	lncRNA	9944-1_{1..3000}	lnc-SETD4-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SETD4-3:4	chr21	 37520268	 37523267	-	lnc-SETD4-3	lnc-SETD4-3:4	ENSG00000236830	AP000689.8	CBR3	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CBR3:range=chr21:37507491-375188105'pad=0,hg19_refFlat_CBR3:range=chr21:37507491-375188105'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50chr21:37510268-37518860"	NA	inter
CUST_21946_PI429285431	1.1489847	A	1.3299625	A	0.88210493880658	0	lncRNA	23554-1_{1..449}	lnc-DNAJA4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DNAJA4-1:1	chr15	 78588010	 78588458	+	lnc-DNAJA4-1	lnc-DNAJA4-1:1	ENSG00000259322.1	RP11-762H8.1	WDR61	NA	chr15:78578010-78591940	inner
CUST_37938_PI429285431	6.2748656	P	6.9377856	P	0.631598653217924	0	lncRNA	39028-1_{1..920}	n346484|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2034|NULL|-1.3355900|-0.2018825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346484|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2034|NULL|-1.3355900|-0.2018825	chr18	 14201136	 14202055	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12913_PI429285431	2.1604834	A	2.6033638	A	0.73566435727156	0	lncRNA	14542-1_{1..3000}	lnc-MANEA-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MANEA-3:2	chr6	 94453834	 94456833	+	lnc-MANEA-3	lnc-MANEA-3:2	XLOC_005392	linc-MANEA-3	NA	NA	NA	inter
CUST_37413_PI429285431	0.9252635	A	1.2279872	A	0.810720371399724	0	lncRNA	38519-1_{1..906}	n345868|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1417|NULL|-1.2822500|-0.2215239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n345868|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1417|NULL|-1.2822500|-0.2215239	chr4	113614215	113615120	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28029_PI429285431	0.92233807	A	0.9190811	A	1.002260109779	0	lncRNA	29644-1_{1..289}	n325291|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327286|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327286|-1.2628700|-0.3125561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325291|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327286|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327286|-1.2628700|-0.3125561	chr2	 64411123	 64411411	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5053_PI429285431	1.1331534	A	1.0917764	A	1.02909559240514	0	lncRNA	4993-1_{1..454}	"transcript_id ""ENST00000557778.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557778.1"" | genecode_v17"	chr14	102100791	102101244	-	ENSG00000258404.1	ENST00000557778.1	RP11-1029J19.5	RP11-1029J19.5-001	NA	NA	NA	inter
CUST_31823_PI429285431	7.7117324	P	8.340056	P	0.646927703511834	0	lncRNA	33559-1_{1..613}	n338370|CR625027|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|765|NULL|-1.1767800|-0.4222189	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338370|CR625027|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|765|NULL|-1.1767800|-0.4222189	chr14	 71581485	 71582097	+	NA	NA	NA	NA	PCNX	NA	chr14:71571485-71582099	inner
CUST_49702_PI429285431	2.6301577	A	1.5551311	A	2.10676091540892	0	lncRNA	53479-1_{1..1376}	hg19_lincRNAsTranscripts_TCONS_l2_00026400 range=chr7:17475097-17502927 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026400 range=chr7:17475097-17502927 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 17475097	 17476472	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23343_PI429285431	1.715914	A	1.5178897	A	1.14712634565908	0	lncRNA	24912-1_{1..589}	lnc-C5orf42-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C5orf42-3:1	chr5	 36725216	 36725804	-	lnc-C5orf42-3	lnc-C5orf42-3:1	ENSG00000250155.1	CTD-2353F22.1	NA	NA	NA	inter
CUST_6018_PI429285431	2.264338	A	1.7871737	A	1.39200491000557	0	lncRNA	5944-1_{1..1195}	"transcript_id ""ENST00000566986.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566986.1"" | genecode_v17"	chr17	 80251592	 80252786	+	ENSG00000260563.2	ENST00000566986.1	RP13-516M14.1	RP13-516M14.1-001	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20"	NA	inter
LNCA_21_P0002323	0.92447835	A	0.9105116	A	1.00972802598155	0	lncRNA	TCONS_00003954	NA	NA	NA	NA	XLOC_001772	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001772), lincRNA [TCONS_00003954]"	chr2:180782274-180782333	hs|2q31.3	Agilent_HUMAN_G3V2	TCONS_00003954	TCONS_00003954	chr2	180782274	180782333	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47483_PI429285431	4.2715397	P	4.4344	P	0.893252344166617	0	lncRNA	51504-1_{1..1203}	"gi|310124107|ref|XR_109752.1| PREDICTED: Homo sapiens uncharacterized LOC100507580 (LOC100507580), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124107|ref|XR_109752.1| PREDICTED: Homo sapiens uncharacterized LOC100507580 (LOC100507580), misc_RNA"	NA	NA	NA	NA	NA	XR_109752.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	Unknown
CUST_15306_PI429285431	0.91075844	A	0.9096287	A	1.0007833827799	0	lncRNA	16984-1_{1..824}	lnc-PPP3CA-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-PPP3CA-3:1	chr4	101596205	101597028	-	lnc-PPP3CA-3	lnc-PPP3CA-3:1	XLOC_004024	linc-EMCN-2	NA	NA	NA	inter
CUST_49226_PI429285431	1.9907669	A	1.2090364	A	1.71919179201991	0	lncRNA	53046-1_{1..2420}	hg19_lincRNAsTranscripts_TCONS_l2_00021475 range=chr4:188294444-188298316 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021475 range=chr4:188294444-188298316 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	188294444	188296863	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17846_PI429285431	1.0073221	A	0.90553063	A	1.07310516643587	0	lncRNA	19581-1_{1..736}	lnc-INTS6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INTS6-2:1	chr13	 51765817	 51766552	-	lnc-INTS6-2	lnc-INTS6-2:1	XLOC_010616	linc-DLEU7-1	NA	NA	NA	inter
LNCA_21_P0001347	0.9242162	A	0.9117027	A	1.0087114227502	0	lncRNA	TCONS_00001046	NA	NA	NA	NA	XLOC_000307	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000307), lincRNA [TCONS_00001046]"	chr1:95752878-95752937	hs|1p21.3	Agilent_HUMAN_G3V2	TCONS_00001046	TCONS_00001046	chr1	 95752878	 95752937	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6670_PI429285431	0.9184473	A	1.6781693	A	0.590610127319388	0	lncRNA	6617-1_{1..602}	"transcript_id ""ENST00000453921.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453921.2"" | genecode_v17"	chr20	 24278221	 24278822	-	ENSG00000232200.2	ENST00000453921.2	RP4-564O4.1	RP4-564O4.1-001	NA	NA	NA	inter
CUST_33209_PI429285431	0.9120275	A	0.9140401	A	0.998605944583667	0	lncRNA	34800-1_{1..1723}	n339907|BC036306|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2356|NULL|-1.0157700|-0.3034473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n339907|BC036306|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2356|NULL|-1.0157700|-0.3034473	chr18	 61771324	 61773046	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42776_PI429285431	0.9173534	A	0.92221457	A	0.99663616413594	0	lncRNA	45760-1_{1..144}	ENST00000364263 ncrna:snoRNA chromosome:GRCh37:7:51003047:51003190:-1 gene:ENSG00000201133 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364263 ncrna:snoRNA chromosome:GRCh37:7:51003047:51003190:-1 gene:ENSG00000201133 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 51003047	 51003190	-	ENSG00000201133	ENST00000364263	NA	NA	NA	NA	NA	inter
CUST_15516_PI429285431	2.5571055	A	2.57077	A	0.990573203819385	0	lncRNA	17202-4_{9001..12000}	lnc-NAP1L2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NAP1L2-1:4	chrX	 73070217	 73073216	-	lnc-NAP1L2-1	lnc-NAP1L2-1:4	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_50763_PI429285431	4.501039	P	4.719162	P	0.859683189020123	0	lncRNA	54427-1_{1..708}	hg19_lincRNAsTranscripts_TCONS_l2_00005000 range=chr11:49013021-49023051 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005000 range=chr11:49013021-49023051 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	 49013021	 49013728	-	NA	NA	NA	NA	LOC120824	NA	chr11:49003021-49003247	inter
CUST_2855_PI429285431	1.3647325	A	1.535899	A	0.888124292386207	0	lncRNA	2838-1_{1..3000}	"transcript_id ""ENST00000421767.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000421767.1"" | genecode_v17"	chr7	 65841031	 65844030	-	ENSG00000179406.6	ENST00000421767.1	LINC00174	LINC00174-001	NA	NA	NA	inter
CUST_29504_PI429285431	6.540551	P	4.6769247	P	3.63921251227785	0	lncRNA	31262-1_{1..630}	n332935|AF086545|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067424|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067424|1.7916000|-0.2381642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332935|AF086545|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067424|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067424|1.7916000|-0.2381642	chr1	158979730	158980359	+	NA	NA	NA	NA	IFI16	NA	chr1:158979682-158995787	inner
CUST_27132_PI429285431	4.908307	P	4.7155604	P	1.14293756823314	0	lncRNA	28668-1_{1..692}	n324248|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324926|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324926|-1.2390900|-0.2444882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324248|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324926|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324926|-1.2390900|-0.2444882	chr7	  7956008	  7956699	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34152_PI429285431	0.90927505	A	0.9034826	A	1.0040230913785	0	lncRNA	35670-1_{1..1718}	n340995|AL049270|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3461|NULL|-0.7765910|-0.3740897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340995|AL049270|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3461|NULL|-0.7765910|-0.3740897	chr11	 26689138	 26690855	-	NA	NA	NA	NA	ANO3	NA	chr11:26679138-26684836	inner
CUST_15709_PI429285431	0.920848	A	2.7270205	A	0.285948550992338	0	lncRNA	17397-1_{1..1294}	lnc-SMC1B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMC1B-3:2	chr22	 46001619	 46002912	-	lnc-SMC1B-3	lnc-SMC1B-3:2	XLOC_014399	linc-FBLN1-AS	FBLN1	"hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50chr22:45991619-45997014"	NA	inter
CUST_24750_PI429285431	0.903616	A	0.90115595	A	1.00170663136205	0	lncRNA	26294-1_{1..571}	lnc-UBASH3B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBASH3B-2:1	chr11	122178378	122178948	+	lnc-UBASH3B-2	lnc-UBASH3B-2:1	ENSG00000255219.1	RP11-716H6.2	NA	NA	NA	inter
CUST_34838_PI429285431	6.532589	P	4.417226	P	4.33299027915529	0	lncRNA	36267-1_{1..1676}	n341743|AK094413|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4216|NULL|-1.1618000|-0.3821849	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341743|AK094413|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4216|NULL|-1.1618000|-0.3821849	chr9	104235456	104237131	-	NA	NA	NA	NA	C9orf125	NA	chr9:104237608-104247132	inter
CUST_95_PI429201921	0.9025074	A	1.033548	A	0.913172551353429	0	lncRNA	98-1_{1..2750}	TC10002608.hg.1	TCONS_l2_00004174-XLOC_l2_001958 // Broad TUCP // linc-AGAP9-1 chr10:-:47270680-47273431 // chr10 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr10:-:47270680-47273431	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00004174-XLOC_l2_001958	linc-AGAP9-1	chr10	 47270680	 47273431	-	NA	NA	NA	NA	LOC100288646	NA	chr1:327463-334955	Unknown
CUST_44802_PI429285431	2.7704449	A	3.004133	A	0.850458002922366	0	lncRNA	49337-1_{1..722}	"gi|315139030|ref|NR_037662.1| Homo sapiens selenoprotein K pseudogene (LOC100287632), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315139030|ref|NR_037662.1| Homo sapiens selenoprotein K pseudogene (LOC100287632), non-coding RNA"	Chr6	119103871	119104592	+	100287632	NR_037662.1	NA	NA	NA	NA	NA	inter
CUST_23903_PI429285431	4.8675203	P	4.8616195	P	1.00409849885133	0	lncRNA	25460-1_{1..855}	lnc-KLHL25-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KLHL25-1:2	chr15	 86299053	 86299907	-	lnc-KLHL25-1	lnc-KLHL25-1:2	ENSG00000259416.2	RP11-158M2.5	AKAP13	NA	chr15:86289053-86292586	inter
CUST_43920_PI429285431	0.91715246	A	1.2270665	A	0.806689822734793	0	lncRNA	48633-1_{1..1416}	"gi|336455103|ref|NR_038891.1| Homo sapiens uncharacterized LOC285000 (LOC285000), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336455103|ref|NR_038891.1| Homo sapiens uncharacterized LOC285000 (LOC285000), non-coding RNA"	Chr2	106209554	106210969	-	285000	NR_038891.1	NA	NA	NA	NA	NA	inter
CUST_23041_PI429285431	5.0209994	P	4.8716516	P	1.10906798170374	0	lncRNA	24612-1_{1..565}	lnc-NME3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NME3-1:1	chr16	  1802240	  1802804	-	lnc-NME3-1	lnc-NME3-1:1	ENSG00000261207.1	LA16c-361A3.3	MAPK8IP3	NA	chr16:1792240-1812263	inner
CUST_31216_PI429285431	5.0044794	P	3.628945	P	2.59464003231035	0	lncRNA	33008-1_{1..3000}	n337663|AK056476|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|43|NULL|-0.5890090|-0.2475546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337663|AK056476|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|43|NULL|-0.5890090|-0.2475546	chrX	 41374190	 41377189	-	NA	NA	NA	NA	CASK	NA	chrX:41374187-41387611	inner
LNCA_21_P0007370	2.5060399	A	2.3838527	A	1.08838365807266	0	lncRNA	TCONS_00019700	NA	NA	NA	NA	XLOC_009498	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009498), lincRNA [TCONS_00019700]"	chr11:72514802-72514743	hs|11q13.4	Agilent_HUMAN_G3V2	TCONS_00019700	TCONS_00019700	chr11	 72514743	 72514802	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37379_PI429285431	0.9056237	A	0.9067322	A	0.999231941458428	0	lncRNA	38482-2_{3001..4389}	n345827|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1376|NULL|-1.2616000|-0.3142962	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345827|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1376|NULL|-1.2616000|-0.3142962	chr13	 55616911	 55618299	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17476_PI429285431	1.111339	A	0.9136645	A	1.14684824381332	0	lncRNA	19202-1_{1..960}	lnc-URI1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-URI1-1:1	chr19	 30576127	 30577086	+	lnc-URI1-1	lnc-URI1-1:1	XLOC_013034	linc-ZNF536	NA	NA	NA	inter
CUST_51366_PI429285431	0.9069909	A	1.1696839	A	0.833530560411365	0	lncRNA	54962-1_{1..431}	hg19_lincRNAsTranscripts_TCONS_l2_00008797 range=chr15:85115345-85116457 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008797 range=chr15:85115345-85116457 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 85115345	 85115775	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29362_PI429285431	1.3397405	A	1.1304861	A	1.15609054970799	0	lncRNA	31114-1_{1..2157}	n332620|BX538286|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000055068|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000055068|7.8641900|-0.3909939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332620|BX538286|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000055068|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000055068|7.8641900|-0.3909939	chr1	 93671112	 93673268	+	NA	NA	NA	NA	CCDC18	NA	chr1:93661112-93722458	inner
CUST_31713_PI429285431	0.9291987	A	0.91801906	A	1.00777923820489	0	lncRNA	33456-1_{1..3000}	n338242|AK091230|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|635|NULL|-1.1915900|-0.3847506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338242|AK091230|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|635|NULL|-1.1915900|-0.3847506	chr14	 30839313	 30842312	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19607_PI429285431	1.0466702	A	1.0691825	A	0.984516779596764	0	lncRNA	21263-1_{1..532}	lnc-AL445989.1-13:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL445989.1-13:1	chr13	 66897306	 66897837	+	lnc-AL445989.1-13	lnc-AL445989.1-13:1	ENSG00000234527.1	PCDH9-AS1	PCDH9	NA	chr13:66887306-66907693	inner
CUST_46103_PI429285431	1.1036458	A	0.9161268	A	1.13880363246995	0	lncRNA	50366-1_{1..750}	"gi|334085180|ref|NR_038300.1| Homo sapiens uncharacterized LOC100507377 (LOC100507377), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|334085180|ref|NR_038300.1| Homo sapiens uncharacterized LOC100507377 (LOC100507377), non-coding RNA"	Chr12	 74526953	 74527702	-	100507377	NR_038300.1	NA	NA	NA	"hg19_refFlat_VENTX:range=chr10:135051419-1350538105'pad=0,hg19_refFlat_VENTX:range=chr10:135051419-1350538105'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20"	NA	inter
CUST_47924_PI429285431	7.22373	P	7.454871	P	0.851960825677375	0	lncRNA	51815-1_{1..1281}	"gi|410172166|ref|XR_171651.1| PREDICTED: Homo sapiens uncharacterized LOC101060139 (LOC101060139), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172166|ref|XR_171651.1| PREDICTED: Homo sapiens uncharacterized LOC101060139 (LOC101060139), misc_RNA"	NA	NA	NA	NA	NA	XR_171651.1	NA	NA	NA	NA	NA	Unknown
CUST_50946_PI429285431	6.495318	P	5.314911	P	2.266407058553	0	lncRNA	54587-2_{3001..4068}	hg19_lincRNAsTranscripts_TCONS_l2_00006264 range=chr12:55803574-55808808 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006264 range=chr12:55803574-55808808 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 55806574	 55807641	-	NA	NA	NA	NA	OR6C65	NA	chr12:55793574-55795251	inter
LNCA_21_P0004389	0.99223536	A	0.9596077	A	1.02287344591841	0	lncRNA	TCONS_00010337	NA	NA	NA	NA	XLOC_004826	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004826), lincRNA [TCONS_00010337]"	chr5:54895960-54895901	hs|5q11.2	Agilent_HUMAN_G3V2	TCONS_00010337	TCONS_00010337	chr5	 54895901	 54895960	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36138_PI429285431	3.142922	P	3.4672656	P	0.798661680240638	0	lncRNA	37422-2_{3001..6000}	n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	chr8	128092803	128095802	-	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00"	NA	inter
CUST_757_PI429285431	0.9544339	A	1.1757976	A	0.857754265352831	0	lncRNA	748-1_{1..558}	"transcript_id ""ENST00000429878.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429878.1"" | genecode_v17"	chr2	 11988748	 11989305	+	ENSG00000224184.1	ENST00000429878.1	AC096559.1	AC096559.1-007	NA	NA	NA	inter
CUST_51493_PI429285431	1.4586135	A	2.1654341	A	0.612668846956952	0	lncRNA	55069-1_{1..308}	hg19_lincRNAsTranscripts_TCONS_l2_00010198 range=chr16:56195805-56223507 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010198 range=chr16:56195805-56223507 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 56195805	 56196112	-	NA	NA	NA	NA	GNAO1	NA	chr16:56225251-56233507	inter
CUST_19272_PI429285431	5.3358865	P	5.670703	P	0.792884979225708	0	lncRNA	20940-1_{1..917}	lnc-CCDC28A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC28A-1:1	chr6	139017734	139018650	+	lnc-CCDC28A-1	lnc-CCDC28A-1:1	ENSG00000225177.1	RP11-390P2.4	NA	NA	NA	inter
CUST_38618_PI429285431	1.4360198	A	2.392868	A	0.515181181189274	0	lncRNA	39622-1_{1..1863}	n383764|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ufj.3||-1.2182200|-0.3396374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383764|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ufj.3||-1.2182200|-0.3396374	chr2	170606508	170608370	+	NA	NA	NA	NA	PHOSPHO2-KLHL23	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TVP23C:range=chr17:15406178-154667625'pad=0,hg19_refFlat_TVP23C:range=chr17:15406178-154667625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40chr2:170596508-170608396"	NA	inner
LNCA_21_P0006822	4.4633574	P	4.7503505	P	0.81960852758259	0	lncRNA	TCONS_00018098	NA	NA	NA	NA	XLOC_008367	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008367), lincRNA [TCONS_00018098]"	chr10:6374641-6374700	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_00018098	TCONS_00018098	chr10	  6374641	  6374700	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36555_PI429285431	3.2115536	P	3.6902218	P	0.71763979559983	0	lncRNA	37751-1_{1..552}	n345053|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_602|NULL|-1.3043400|-0.2540077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345053|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_602|NULL|-1.3043400|-0.2540077	chr9	 84189582	 84190133	-	NA	NA	NA	NA	TLE1	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70chr9:84198598-84200134"	NA	inter
CUST_16494_PI429285431	2.3764324	A	1.3005402	A	2.10802532637521	0	lncRNA	18192-1_{1..3000}	lnc-DNAJC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAJC1-1:1	chr10	 22540633	 22543632	-	lnc-DNAJC1-1	lnc-DNAJC1-1:1	XLOC_008747	linc-DNAJC1	NA	"hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80"	NA	inter
CUST_6583_PI429285431	1.2305675	A	0.93077874	A	1.2309641618712	0	lncRNA	6531-1_{1..619}	"transcript_id ""ENST00000595133.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595133.1"" | genecode_v17"	chr19	 54753289	 54753907	-	ENSG00000268164.1	ENST00000595133.1	CTD-2337J16.1	CTD-2337J16.1-001	LILRB5	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10chr19:54754270-54761167"	NA	inter
CUST_1066_PI429285431	1.004864	A	1.1254824	A	0.919793303873624	0	lncRNA	1055-2_{3001..4476}	"transcript_id ""ENST00000564121.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564121.1"" | genecode_v17"	chr2	127785787	127787262	+	ENSG00000260163.1	ENST00000564121.1	RP11-521O16.2	RP11-521O16.2-001	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00"	NA	inter
CUST_15309_PI429285431	0.96081483	A	0.9770407	A	0.98881609407321	0	lncRNA	16987-1_{1..271}	lnc-GAP43-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GAP43-9:2	chr3	116961481	116961751	+	lnc-GAP43-9	lnc-GAP43-9:2	XLOC_002770	linc-C3orf30-6	NA	NA	NA	inter
CUST_29800_PI429285431	9.89662	P	10.326326	P	0.742413062747194	0	lncRNA	31563-1_{1..259}	n333509|BC035595|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000093973_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000093973_03|-1.0941300|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333509|BC035595|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000093973_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000093973_03|-1.0941300|-1.0000000	chr1	  1310086	  1310344	-	NA	NA	NA	NA	AURKAIP1	NA	chr1:1309110-1310818	inner
CUST_27556_PI429285431	0.92943734	A	0.92518765	A	1.00295000336308	0	lncRNA	29135-2_{3001..3290}	n324746|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319010|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319010|1.0929300|-0.3373299	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324746|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319010|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319010|1.0929300|-0.3373299	chr22	 18709327	 18709616	+	NA	NA	NA	NA	LOC642643	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20chr22:18703328-18737841"	NA	inter
CUST_29906_PI429285431	2.4422297	A	2.3307803	A	1.08031302530348	0	lncRNA	31669-1_{1..440}	n334021|M22596|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194851|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194851|2.4389100|-0.0886733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334021|M22596|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194851|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194851|2.4389100|-0.0886733	chr19	 42597973	 42598412	-	NA	NA	NA	NA	POU2F2	NA	chr19:42593508-42609982	inner
CUST_36113_PI429285431	0.9499809	A	0.92589694	A	1.01683384788068	0	lncRNA	37405-1_{1..1640}	n344690|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_239|NULL|-1.5155200|-0.4196577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344690|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_239|NULL|-1.5155200|-0.4196577	chr2	162098306	162099945	-	NA	NA	NA	NA	TANK	NA	chr2:162088306-162092683	inter
CUST_38408_PI429285431	11.56208	P	12.190513	P	0.64687864864894	0	lncRNA	39438-3_{6001..6671}	n382353|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yyb.3||-1.0510300|-0.2691256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n382353|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yyb.3||-1.0510300|-0.2691256	chr15	 25334542	 25335212	+	NA	NA	NA	NA	SNRPN	NA	chr15:25318542-25377621	inter
CUST_8777_PI429285431	4.2040215	P	4.0386353	P	1.12146624700886	0	lncRNA	10319-1_{1..3000}	lnc-ADD1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ADD1-1:4	chr4	  2951880	  2954879	+	lnc-ADD1-1	lnc-ADD1-1:4	ENSG00000249673	RP11-520M5.5	NOP14	"hg19_refFlat_NOP14:range=chr4:2940558-29650465'pad=0,hg19_refFlat_NOP14:range=chr4:2940558-29650465'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr4:2941880-2962794"	NA	inner
CUST_47424_PI429285431	0.9658946	A	0.9649743	A	1.00063810685388	0	lncRNA	51461-1_{1..456}	"gi|397139750|ref|XR_109684.2| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 316 (LINC00316), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139750|ref|XR_109684.2| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 316 (LINC00316), misc_RNA"	NA	NA	NA	NA	NA	XR_109684.2	NA	NA	NA	NA	NA	Unknown
CUST_18288_PI429285431	6.2753286	P	6.626425	P	0.783988066722533	0	lncRNA	20019-1_{1..2302}	lnc-YBEY-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-YBEY-2:2	chr21	 47660748	 47663049	+	lnc-YBEY-2	lnc-YBEY-2:2	ENSG00000215424	MCM3AP-AS1	MCM3AP	"hg19_refFlat_MCM3AP:range=chr21:47655182-477052005'pad=0,hg19_refFlat_MCM3AP:range=chr21:47655182-477052005'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00chr21:47655048-47672913"	NA	inner
CUST_34294_PI429285431	1.3503655	A	0.9140817	A	1.35311438299702	0	lncRNA	35792-1_{1..2914}	n341154|BC036614|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3620|NULL|-1.0971800|-0.2551375	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341154|BC036614|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3620|NULL|-1.0971800|-0.2551375	chr11	128659851	128662764	+	NA	NA	NA	NA	FLI1	NA	chr11:128649851-128672730	inner
LNCA_21_P0001428	6.523899	P	6.692055	P	0.889979493712169	0	lncRNA	TCONS_00001304	NA	NA	NA	NA	XLOC_000585	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000585), lincRNA [TCONS_00001304]"	chr1:225659998-225660057	hs|1q42.12	Agilent_HUMAN_G3V2	TCONS_00001304	TCONS_00001304	chr1	225659998	225660057	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14814_PI429285431	5.3016973	P	5.3737183	P	0.951304428957379	0	lncRNA	16474-3_{6001..7114}	lnc-CRYBA4-1:27	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:27	chr22	 27123613	 27124726	+	lnc-CRYBA4-1	lnc-CRYBA4-1:27	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
CUST_25859_PI429285431	3.2152998	P	2.9753592	A	1.18094403748756	0	lncRNA	27381-1_{1..3000}	lnc-CELF6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CELF6-1:1	chr15	 72668061	 72671060	-	lnc-CELF6-1	lnc-CELF6-1:1	ENSG00000260729.1	RP11-106M3.2	HEXA	NA	chr15:72658061-72668520	inner
LNCA_19_P00327320	6.6889725	P	7.0118103	P	0.799495711381535	0	lncRNA	TCONS_00014630	NA	NA	NA	NA	XLOC_006725	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006725), lincRNA [TCONS_00014630]"	chr8:16996114-16996173	hs|8p22	Agilent_HUMAN_G3V2	TCONS_00014630	TCONS_00014630	chr8	 16996114	 16996173	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14703_PI429285431	2.4085925	A	2.978384	A	0.673714147365836	0	lncRNA	16367-1_{1..787}	lnc-USP14-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP14-5:2	chr18	    15617	    16403	+	lnc-USP14-5	lnc-USP14-5:2	XLOC_012598	linc-USP14-3	LOC100652790	NA	chr18:11264-12387	inter
CUST_46162_PI429285431	4.2864842	P	4.627442	P	0.789516980374789	0	lncRNA	50411-1_{1..2691}	"gi|397139478|ref|XR_109113.2| PREDICTED: Homo sapiens uncharacterized LOC100128276 (LOC100128276), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139478|ref|XR_109113.2| PREDICTED: Homo sapiens uncharacterized LOC100128276 (LOC100128276), misc_RNA"	Chr12	129325443	129328133	-	100128276	XR_109113.3	NA	NA	NA	NA	NA	inter
CUST_483_PI429285431	3.1626768	A	2.5466406	A	1.53265841707985	0	lncRNA	474-1_{1..335}	"transcript_id ""ENST00000424181.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424181.1"" | genecode_v17"	chr1	173991647	173991981	+	ENSG00000224977.1	ENST00000424181.1	RP11-160H22.3	RP11-160H22.3-001	NA	NA	NA	inter
CUST_20160_PI429285431	0.9226879	A	1.5407596	A	0.651541193157421	0	lncRNA	21805-1_{1..640}	lnc-ZNF727-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ZNF727-5:1	chr7	 63610575	 63611214	+	lnc-ZNF727-5	lnc-ZNF727-5:1	ENSG00000244008.1	RP11-321E8.3	NA	NA	NA	inter
CUST_49353_PI429285431	1.7794096	A	1.8661156	A	0.941670343535715	0	lncRNA	53166-1_{1..1573}	hg19_lincRNAsTranscripts_TCONS_l2_00022397 range=chr5:85382826-85385030 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022397 range=chr5:85382826-85385030 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 85382826	 85384398	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8679_PI429285431	0.899923	A	0.8982935	A	1.00113012143724	0	lncRNA	10227-1_{1..1890}	lnc-ATP1B3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATP1B3-2:1	chr3	141668934	141670823	+	lnc-ATP1B3-2	lnc-ATP1B3-2:1	ENSG00000245409	ENST00000499676	TFDP2	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.01;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90chr3:141663270-141679388"	NA	inner
CUST_27725_PI429285431	0.9099563	A	1.6710001	A	0.590069256984087	0	lncRNA	29306-1_{1..1340}	n324939|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000259285|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000259285|-0.0637644|-0.3298073	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324939|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000259285|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000259285|-0.0637644|-0.3298073	chr20	 53472987	 53474326	+	NA	NA	NA	NA	NA	"hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
CUST_15272_PI429285431	1.2408532	A	1.3973722	A	0.897187235430832	0	lncRNA	16946-1_{1..261}	lnc-HDDC2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HDDC2-2:2	chr6	125766168	125766428	-	lnc-HDDC2-2	lnc-HDDC2-2:2	XLOC_005827	linc-HDDC2-4	NA	NA	NA	inter
LNCA_21_P0002244	1.9073852	A	3.1103795	P	0.434372808752361	0	lncRNA	TCONS_00003745	NA	NA	NA	NA	XLOC_001543	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001543), lincRNA [TCONS_00003745]"	chr2:78322828-78322887	hs|2p12	Agilent_HUMAN_G3V2	TCONS_00003745	TCONS_00003745	chr2	 78322828	 78322887	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3852_PI429285431	1.8603123	A	2.5161374	A	0.634712385443553	0	lncRNA	3821-1_{1..573}	"transcript_id ""ENST00000528915.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000528915.1"" | genecode_v17"	chr11	  5959981	  5960553	+	ENSG00000255257.1	ENST00000528915.1	AC025016.1	AC025016.1-001	OR56A3	NA	chr11:5949981-5969524	inter
LNCA_21_P0003028	2.0711174	A	0.9258019	A	2.21194497943283	0	lncRNA	TCONS_00006203	NA	NA	NA	NA	XLOC_002798	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002798), lincRNA [TCONS_00006203]"	chr3:126013418-126013477	hs|3q21.3	Agilent_HUMAN_G3V2	TCONS_00006203	TCONS_00006203	chr3	126013418	126013477	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_351_PI429285431	0.922397	A	1.3226627	A	0.757718721948848	0	lncRNA	344-1_{1..432}	"transcript_id ""ENST00000419428.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419428.1"" | genecode_v17"	chr1	108614104	108614535	+	ENSG00000226822.1	ENST00000419428.1	RP11-356N1.2	RP11-356N1.2-001	NA	NA	NA	inter
CUST_21687_PI429285431	1.8808988	A	0.9125465	A	1.95660468311312	0	lncRNA	23297-1_{1..297}	lnc-NKAIN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKAIN2-1:1	chr6	123789945	123790241	+	lnc-NKAIN2-1	lnc-NKAIN2-1:1	ENSG00000235535.1	RP11-532N4.2	TRDN	NA	chr6:123779945-123800075	inner
CUST_24613_PI429285431	4.751651	P	4.82279	P	0.951886192264266	0	lncRNA	26162-1_{1..254}	lnc-TTC30A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTC30A-1:1	chr2	178876634	178876887	-	lnc-TTC30A-1	lnc-TTC30A-1:1	ENSG00000236664.1	AC011998.1	PDE11A	NA	chr2:178866634-178886716	inner
LNCA_21_P0008643	2.3622775	A	1.3734106	A	1.98462564355151	0	lncRNA	TCONS_00023441	NA	NA	NA	NA	XLOC_011284	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011284), lincRNA [TCONS_00023441]"	chr15:63730425-63730484	hs|15q22.31	Agilent_HUMAN_G3V2	TCONS_00023441	TCONS_00023441	chr15	 63730425	 63730484	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36533_PI429285431	0.9030378	A	0.90401006	A	0.999326307754822	0	lncRNA	37732-2_{3001..6000}	n345034|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_583|NULL|-1.3243000|-0.3165207	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345034|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_583|NULL|-1.3243000|-0.3165207	chr9	 36425447	 36428446	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10"	NA	inter
CUST_40769_PI429285431	4.218151	P	3.9507368	P	1.20364854577531	0	lncRNA	41490-1_{1..1048}	n410488|NR_037630|lncRNA|Homosapiens||RefGeneNoncode|NR_037630||0.8196800|-0.2719812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410488|NR_037630|lncRNA|Homosapiens||RefGeneNoncode|NR_037630||0.8196800|-0.2719812	chr4	120375937	120376984	+	NA	NA	NA	NA	PDE5A	NA	chr4:120415550-120430747	inner
CUST_7463_PI429285431	6.114418	P	6.419917	P	0.809162294727418	0	lncRNA	9106-1_{1..531}	lnc-BHLHE41-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BHLHE41-2:7	chr12	 26111865	 26112395	-	lnc-BHLHE41-2	lnc-BHLHE41-2:7	ENSG00000246695	RP11-877E17.2	NA	NA	NA	inner
CUST_8140_PI429285431	4.329207	P	3.7782688	P	1.46503811616812	0	lncRNA	9743-1_{1..549}	lnc-CCDC90B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCDC90B-2:1	chr11	 82904509	 82905057	-	lnc-CCDC90B-2	lnc-CCDC90B-2:1	ENSG00000247137	RP11-727A23.5	ANKRD42	NA	chr11:82905291-82914836	inter
CUST_10326_PI429285431	1.088606	A	1.3182065	A	0.85287102954895	0	lncRNA	11854-1_{1..320}	lnc-PTGER4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTGER4-1:1	chr5	 40389666	 40389985	+	lnc-PTGER4-1	lnc-PTGER4-1:1	XLOC_004353	linc-PTGER4-1	NA	NA	NA	inter
CUST_50807_PI429285431	5.168514	P	5.379807	P	0.863762746174845	0	lncRNA	54458-1_{1..1304}	hg19_lincRNAsTranscripts_TCONS_l2_00004475 range=chr11:34592489-34600868 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004475 range=chr11:34592489-34600868 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 34592489	 34593792	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26588_PI429285431	9.712277	P	9.8718	P	0.895321043071909	0	lncRNA	28091-1_{1..343}	lnc-TARBP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TARBP2-1:1	chr12	 53902608	 53902950	+	lnc-TARBP2-1	lnc-TARBP2-1:1	ENSG00000257117.1	RP11-793H13.4	ATF7	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-29.80chr12:53905843-53912749"	NA	inter
CUST_38250_PI429285431	12.080561	P	11.124559	P	1.93992650999079	0	lncRNA	39308-1_{1..1930}	n381773|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pof.1||6.0824500|-0.2616528	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381773|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pof.1||6.0824500|-0.2616528	chr11	113659952	113661881	+	NA	NA	NA	NA	USP28	NA	chr11:113659809-113671882	inter
CUST_4029_PI429285431	0.9224669	A	0.92225724	A	1.0001453357981	0	lncRNA	3990-1_{1..530}	"transcript_id ""ENST00000530896.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530896.1"" | genecode_v17"	chr11	 81590893	 81591422	-	ENSG00000245832.2	ENST00000530896.1	RP11-179A16.1	RP11-179A16.1-002	NA	NA	NA	inter
CUST_33899_PI429285431	1.0532805	A	0.922522	A	1.09486917977836	0	lncRNA	35442-1_{1..3000}	n340690|AK128210|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3153|NULL|0.7451860|-0.2931761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340690|AK128210|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3153|NULL|0.7451860|-0.2931761	chr5	151121876	151124875	-	NA	NA	NA	NA	ATOX1	NA	chr5:151122383-151138210	inner
CUST_9275_PI429285431	2.837931	A	3.7139268	P	0.544877642362042	0	lncRNA	10780-1_{1..378}	lnc-CLVS1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLVS1-1:4	chr8	 61939695	 61940072	+	lnc-CLVS1-1	lnc-CLVS1-1:4	XLOC_006815	linc-CLVS1	NA	NA	NA	inter
CUST_10462_PI429285431	4.472234	P	3.9305239	P	1.45569700694903	0	lncRNA	11988-1_{1..249}	lnc-LARS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LARS2-1:1	chr3	 45370898	 45371146	+	lnc-LARS2-1	lnc-LARS2-1:1	XLOC_002632	linc-LARS2-1	NA	NA	NA	inter
CUST_7264_PI429285431	0.984394	A	1.0397843	A	0.962334062505068	0	lncRNA	8055-1_{1..301}	"transcript_id ""ENST00000364096.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000364096.1"" | genecode_v17"	chr9	103343361	103343661	-	ENSG00000200966.1	ENST00000364096.1	RN7SKP87	RN7SKP87-201	TMEFF1	NA	chr9:103333361-103339918	inner
CUST_443_PI429285431	2.804242	A	2.9252434	A	0.91954915381516	0	lncRNA	435-1_{1..536}	"transcript_id ""ENST00000424741.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424741.1"" | genecode_v17"	chr1	147689214	147689749	+	ENSG00000229438.1	ENST00000424741.1	RP11-301M17.3	RP11-301M17.3-001	NA	NA	NA	inter
CUST_19589_PI429285431	1.2775244	A	1.0726752	A	1.15256586671692	0	lncRNA	21245-1_{1..423}	lnc-FRS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FRS2-1:1	chr12	 69854385	 69854807	+	lnc-FRS2-1	lnc-FRS2-1:1	ENSG00000257507.1	RP11-956E11.1	FRS2	NA	chr12:69844385-69864504	inter
CUST_40611_PI429285431	10.012583	P	10.437528	P	0.744867127660292	0	lncRNA	41357-1_{1..1348}	n410093|NR_036524_5|lncRNA|Homosapiens||RefGeneNoncode|NR_036524_5||2.1712700|-0.1004239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410093|NR_036524_5|lncRNA|Homosapiens||RefGeneNoncode|NR_036524_5||2.1712700|-0.1004239	chr6	 31368472	 31369819	+	NA	NA	NA	NA	MICA	NA	chr6:31367561-31383090	inner
CUST_46478_PI429285431	5.036343	P	4.989002	P	1.03335860675603	0	lncRNA	50675-1_{1..3000}	"gi|375493567|ref|NR_046341.1| Homo sapiens ubiquitin specific peptidase 3 (USP3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375493567|ref|NR_046341.1| Homo sapiens ubiquitin specific peptidase 3 (USP3), transcript variant 3, non-coding RNA"	Chr15	 63796710	 63799709	+	9960	NR_046341.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_38453_PI429285431	3.9993122	P	4.155257	P	0.897544391606404	0	lncRNA	39473-1_{1..2022}	n382717|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bow.2||-0.1135960|-0.2487324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382717|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bow.2||-0.1135960|-0.2487324	chr15	 90617747	 90619768	-	NA	NA	NA	NA	ZNF710	NA	chr15:90610342-90625432	inner
CUST_12268_PI429285431	1.3955204	A	0.9052571	A	1.40470121825791	0	lncRNA	13877-1_{1..212}	lnc-ZFHX4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFHX4-3:1	chr8	 78311200	 78311411	+	lnc-ZFHX4-3	lnc-ZFHX4-3:1	XLOC_006852	linc-PKIA-2	NA	NA	NA	inter
CUST_10086_PI429285431	0.9173645	A	1.125627	A	0.865579058098802	0	lncRNA	11613-1_{1..413}	lnc-SOD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOD3-1:1	chr4	 24670572	 24670984	+	lnc-SOD3-1	lnc-SOD3-1:1	XLOC_003475	linc-SOD3-1	NA	NA	NA	inter
CUST_21089_PI429285431	6.7683864	P	7.326112	P	0.67937234632605	0	lncRNA	22714-1_{1..2048}	lnc-CTU2-6:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTU2-6:7	chr16	 88751541	 88753588	+	lnc-CTU2-6	lnc-CTU2-6:7	ENSG00000260630.1	RP5-1142A6.3	RNF166	"hg19_refFlat_SNAI3:range=chr16:88744856-887528145'pad=0,hg19_refFlat_SNAI3:range=chr16:88744856-887528145'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30chr16:88762903-88763588"	NA	inter
CUST_50699_PI429285431	2.068426	A	1.4232088	A	1.56397472738065	0	lncRNA	54369-1_{1..1018}	hg19_lincRNAsTranscripts_TCONS_l2_00003579 range=chr10:52486382-52487593 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003579 range=chr10:52486382-52487593 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 52486382	 52487399	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10977_PI429285431	1.1908226	A	1.1935179	A	0.998133504477546	0	lncRNA	12520-1_{1..921}	lnc-TTC27-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC27-1:5	chr2	 33066862	 33067782	+	lnc-TTC27-1	lnc-TTC27-1:5	XLOC_001418	linc-LTBP1	NA	NA	NA	inter
CUST_46472_PI429285431	1.8067904	A	1.8748667	A	0.953909099699023	0	lncRNA	50671-1_{1..2190}	"gi|397139575|ref|XR_158879.1| PREDICTED: Homo sapiens uncharacterized LOC100129973 (LOC100129973), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139575|ref|XR_158879.1| PREDICTED: Homo sapiens uncharacterized LOC100129973 (LOC100129973), misc_RNA"	NA	NA	NA	NA	NA	XR_158879.1	NA	NA	NA	"hg19_refFlat_MYO5C:range=chr15:52486099-525878335'pad=0,hg19_refFlat_MYO5C:range=chr15:52486099-525878335'pad=0 3'pad=0 strand=- repeatMasking=none,-96.40"	NA	Unknown
LNCA_21_P0009014	5.0379376	P	5.892195	P	0.553149976888701	0	lncRNA	TCONS_00024590	NA	NA	NA	NA	XLOC_011883	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011883), lincRNA [TCONS_00024590]"	chr16:14512539-14504245	hs|16p13.12	Agilent_HUMAN_G3V2	TCONS_00024590	TCONS_00024590	chr16	 14504245	 14512539	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29547_PI429285431	9.573059	P	9.520913	P	1.03680601994951	0	lncRNA	31307-1_{1..865}	n333026|AF161377|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072107|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072107|2.8222400|-0.1256691	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333026|AF161377|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072107|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072107|2.8222400|-0.1256691	chr20	 47855464	 47856328	+	NA	NA	NA	NA	DDX27	NA	chr20:47845464-47860614	inner
CUST_934_PI429285431	7.835993	P	7.687024	P	1.10877681843581	0	lncRNA	924-1_{1..662}	"transcript_id ""ENST00000414141.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000414141.1"" | genecode_v17"	chr2	 70351168	 70351829	-	ENSG00000231327.1	ENST00000414141.1	AC016700.5	AC016700.5-001	NA	NA	NA	inter
CUST_50973_PI429285431	2.121713	A	2.5287495	A	0.754170957673158	0	lncRNA	54615-1_{1..341}	hg19_lincRNAsTranscripts_TCONS_l2_00005839 range=chr12:96941535-96948490 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005839 range=chr12:96941535-96948490 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 96941535	 96941875	+	NA	NA	NA	NA	C12orf55	NA	chr12:96931535-96958490	inter
CUST_28875_PI429285431	2.6745675	A	2.9685943	P	0.815622341916726	0	lncRNA	30589-1_{1..414}	n326296|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086268|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086268|-1.3566000|-0.3931984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326296|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086268|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086268|-1.3566000|-0.3931984	chr1	188103753	188104166	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23728_PI429285431	0.917011	A	0.915046	A	1.00136296219966	0	lncRNA	25292-1_{1..1167}	lnc-IDS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IDS-2:1	chrX	148630915	148632081	-	lnc-IDS-2	lnc-IDS-2:1	ENSG00000225261.1	RP5-937E21.8	CXorf40A	NA	chrX:148622519-148632086	inner
LNCA_21_P0011797	0.9285268	A	0.91182214	A	1.01164608162223	0	lncRNA	ENST00000453774	NA	NA	NA	NA	XLOC_l2_007274	NA	ENST00000453774	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007274), lincRNA [TCONS_l2_00013565]"	chr2:34962821-34962880	hs|2p22.3	Agilent_HUMAN_G3V2	ENST00000453774	ENST00000453774	chr2	 34962821	 34962880	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22056_PI429285431	4.6025796	P	4.8450956	P	0.845269910735123	0	lncRNA	23664-1_{1..468}	lnc-C8orf59-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C8orf59-1:1	chr8	 86090195	 86090662	-	lnc-C8orf59-1	lnc-C8orf59-1:1	ENSG00000254208.1	RP11-219B4.3	E2F5	"hg19_refFlat_E2F4:range=chr16:67226131-672320265'pad=0,hg19_refFlat_E2F4:range=chr16:67226131-672320265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_E2F5:range=chr8:86089656-861260975'pad=0,hg19_refFlat_E2F5:range=chr8:86089656-861260975'pad=0 3'pad=0 strand=+ repeatMasking=none,-114.10chr8:86089619-86100385"	NA	inner
CUST_31350_PI429285431	2.4582617	A	2.7520728	A	0.815744296235976	0	lncRNA	33132-1_{1..1497}	n337818|BC029440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|201|NULL|-1.1487000|-0.4028001	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337818|BC029440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|201|NULL|-1.1487000|-0.4028001	chr15	 60831921	 60833417	-	NA	NA	NA	NA	RORA	NA	chr15:60821921-60843416	inner
CUST_50741_PI429285431	4.4550824	P	4.770426	P	0.803659564070027	0	lncRNA	54409-1_{1..1008}	hg19_lincRNAsTranscripts_TCONS_l2_00003829 range=chr10:131861938-131902416 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003829 range=chr10:131861938-131902416 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	131861938	131862945	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2368_PI429285431	2.751401	P	3.1024683	P	0.784003880378353	0	lncRNA	2361-1_{1..836}	"transcript_id ""ENST00000507035.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507035.1"" | genecode_v17"	chr5	134374528	134375363	-	ENSG00000249082.1	ENST00000507035.1	CTC-276P9.1	CTC-276P9.1-001	PITX1	NA	chr5:134364528-134369964	inter
CUST_29314_PI429285431	7.3268256	P	7.6459246	P	0.801570322497389	0	lncRNA	31065-1_{1..308}	n332500|DQ925683|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468689|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468689|1.0164000|-0.0917688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332500|DQ925683|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468689|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468689|1.0164000|-0.0917688	chr9	134473664	134473971	-	NA	NA	NA	NA	RAPGEF1	NA	chr9:134463664-134507278	inner
CUST_11602_PI429285431	3.9605927	P	4.1688023	P	0.865610797288562	0	lncRNA	13182-1_{1..3000}	lnc-NCOA3-5:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCOA3-5:9	chr20	 46526331	 46529330	+	lnc-NCOA3-5	lnc-NCOA3-5:9	XLOC_013543	linc-ARFGEF2-12	NA	NA	NA	inter
CUST_39915_PI429285431	5.8703227	P	3.9627926	P	3.75166263346826	0	lncRNA	40795-2_{3001..4339}	n406663|NR_024199|lncRNA|Homosapiens||RefGeneNoncode|NR_024199||7.5661600|-0.3730260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406663|NR_024199|lncRNA|Homosapiens||RefGeneNoncode|NR_024199||7.5661600|-0.3730260	chr7	107387278	107388616	+	NA	NA	NA	NA	CBLL1	NA	chr7:107384279-107402083	inter
CUST_34748_PI429285431	1.2656685	A	1.6822641	A	0.749190442395587	0	lncRNA	36191-1_{1..1775}	n341653|CR605803|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4124|NULL|-1.1678300|-0.3173527	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341653|CR605803|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4124|NULL|-1.1678300|-0.3173527	chr9	  5429449	  5431223	-	NA	NA	NA	NA	C9orf46	NA	chr9:5419449-5437937	inner
CUST_52016_PI429285431	1.3559091	A	0.98011523	A	1.29755336130933	0	lncRNA	55546-1_{1..462}	hg19_lincRNAsTranscripts_TCONS_l2_00017420 range=chr21:15282448-15289165 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017420 range=chr21:15282448-15289165 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 15282448	 15282909	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47137_PI429285431	1.097782	A	3.1222043	A	0.245803557327534	0	lncRNA	51218-1_{1..1492}	"gi|406855447|ref|NR_073180.1| Homo sapiens uncharacterized LOC100996307 (LOC100996307), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|406855447|ref|NR_073180.1| Homo sapiens uncharacterized LOC100996307 (LOC100996307), transcript variant 2, non-coding RNA"	Chr19	 42901300	 42902791	+	100996307	NR_073180.1	NA	NA	NA	"hg19_refFlat_ZFAND5:range=chr9:74970869-749756945'pad=0,hg19_refFlat_ZFAND5:range=chr9:74970869-749756945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_24058_PI429285431	5.033655	P	4.331917	P	1.62646299634315	0	lncRNA	25608-3_{6001..6212}	lnc-SEC16B.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC16B.1-2:2	chr1	177997575	177997786	-	lnc-SEC16B.1-2	lnc-SEC16B.1-2:2	ENSG00000254154.3	SEC16B	NA	NA	NA	inter
CUST_14142_PI429285431	4.6706896	P	5.3049383	P	0.644276241655671	0	lncRNA	15793-1_{1..607}	lnc-BAHD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BAHD1-1:1	chr15	 40727616	 40728222	+	lnc-BAHD1-1	lnc-BAHD1-1:1	XLOC_011221	linc-BAHD1	BAHD1	NA	chr15:40733411-40738138	inter
CUST_9539_PI429285431	4.576204	P	4.576395	P	0.99986761765183	0	lncRNA	11051-1_{1..721}	lnc-WDR3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR3-2:1	chr1	118749062	118749782	+	lnc-WDR3-2	lnc-WDR3-2:1	XLOC_000367	linc-HAO2-3	NA	"hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30"	NA	inter
CUST_35891_PI429285431	2.6794662	A	2.5823743	A	1.06961522044635	0	lncRNA	37275-2_{3001..4262}	n344550|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_98|NULL|-1.3174600|-0.2409892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344550|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_98|NULL|-1.3174600|-0.2409892	chr6	 44045791	 44047052	+	NA	NA	NA	NA	MRPL14	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40chr6:44056862-44071228"	NA	inter
LNCA_21_P0009011	6.9999065	P	7.3577104	P	0.780351543155529	0	lncRNA	TCONS_00024587	NA	NA	NA	NA	XLOC_011880	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011880), lincRNA [TCONS_00024587]"	chr16:14103913-14103854	hs|16p13.12	Agilent_HUMAN_G3V2	TCONS_00024587	TCONS_00024587	chr16	 14103854	 14103913	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28478_PI429285431	0.9278323	A	2.2209733	A	0.408061639731223	0	lncRNA	30145-1_{1..562}	n325820|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316014|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316014|-1.1120900|-0.0657147	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325820|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316014|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316014|-1.1120900|-0.0657147	chr11	130580103	130580664	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_1626_PI429285431	6.214514	P	6.6376634	P	0.745794777681901	0	lncRNA	1612-1_{1..1439}	"transcript_id ""ENST00000453324.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453324.1"" | genecode_v17"	chr3	195384944	195386382	+	ENSG00000242086.3	ENST00000453324.1	AC069513.3	AC069513.3-041	NA	NA	NA	inter
LNCA_21_P0001912	0.92567396	A	1.5481334	A	0.649562638866457	0	lncRNA	ENST00000435441	NA	NA	NA	NA	XLOC_001654	NA	ENST00000435441	NA	NA	"BROAD Institute lincRNA (XLOC_001654), lincRNA [TCONS_00002998]"	chr2:123825235-123825294	hs|2q14.3	Agilent_HUMAN_G3V2	ENST00000435441	ENST00000435441	chr2	123825235	123825294	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45433_PI429285431	7.1357756	P	5.5782413	P	2.94350341206075	0	lncRNA	49851-1_{1..2556}	"gi|198041761|ref|NR_024123.1| Homo sapiens pre-B-cell leukemia homeobox 3 (PBX3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|198041761|ref|NR_024123.1| Homo sapiens pre-B-cell leukemia homeobox 3 (PBX3), transcript variant 4, non-coding RNA"	Chr9	128509617	128512172	+	5090	NR_024123.1	NA	NA	NA	NA	NA	inter
CUST_13006_PI429285431	1.0985869	A	1.088863	A	1.00676285942031	0	lncRNA	14633-1_{1..3000}	lnc-ADARB1-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADARB1-3:10	chr21	 46715936	 46718935	+	lnc-ADARB1-3	lnc-ADARB1-3:10	XLOC_013981	linc-COL18A1-4	POFUT2	NA	chr21:46705936-46707811	inter
CUST_6542_PI429285431	6.5362434	P	7.465416	P	0.525159439640228	0	lncRNA	6485-1_{1..333}	"transcript_id ""ENST00000600152.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600152.1"" | genecode_v17"	chr19	 46676792	 46677124	-	ENSG00000269729.1	ENST00000600152.1	AC006262.4	AC006262.4-002	NA	NA	NA	inter
CUST_31777_PI429285431	9.182799	P	8.840785	P	1.26752482211234	0	lncRNA	33517-1_{1..3000}	n338319|S57153|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|713|NULL|13.6572000|-0.1880511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338319|S57153|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|713|NULL|13.6572000|-0.1880511	chr14	 58813160	 58816159	+	NA	NA	NA	NA	ARID4A	NA	chr14:58803160-58840451	inner
CUST_32976_PI429285431	4.797469	P	5.242993	P	0.734317557361657	0	lncRNA	34592-1_{1..535}	n339652|AK128879|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2096|NULL|-1.3040500|-0.3877166	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339652|AK128879|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2096|NULL|-1.3040500|-0.3877166	chr20	 32291919	 32292453	-	NA	NA	NA	NA	PXMP4	NA	chr20:32290550-32302454	inner
CUST_13315_PI429285431	0.9120217	A	1.2842461	A	0.77259036987478	0	lncRNA	14949-1_{1..441}	lnc-FPGT-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FPGT-3:1	chr1	 73813817	 73814257	+	lnc-FPGT-3	lnc-FPGT-3:1	XLOC_000256	linc-FPGT-2	NA	NA	NA	inter
CUST_44788_PI429285431	3.992166	P	4.5412564	P	0.683450899250573	0	lncRNA	49326-1_{1..3000}	"gi|168693608|ref|NR_015362.1| Homo sapiens tumor suppressor TSG1 (TSG1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|168693608|ref|NR_015362.1| Homo sapiens tumor suppressor TSG1 (TSG1), non-coding RNA"	Chr6	 94416801	 94419800	+	643432	NR_015362.1	NA	NA	NA	NA	NA	inter
CUST_46681_PI429285431	1.7166378	A	1.5041393	A	1.15869310474436	0	lncRNA	50847-1_{1..3000}	"gi|224586818|ref|NR_027264.1| Homo sapiens golgi glycoprotein 1 (GLG1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224586818|ref|NR_027264.1| Homo sapiens golgi glycoprotein 1 (GLG1), transcript variant 4, non-coding RNA"	Chr16	 74481325	 74484324	-	2734	NR_027264.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30"	NA	inter
CUST_50579_PI429285431	1.0296267	A	1.0712298	A	0.971574748819723	0	lncRNA	54272-1_{1..444}	hg19_lincRNAsTranscripts_TCONS_l2_00030956 range=chrY:28767932-28768991 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030956 range=chrY:28767932-28768991 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrY	 28767932	 28768375	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34227_PI429285431	0.9199283	A	0.92779464	A	0.994562306676372	0	lncRNA	35737-1_{1..2041}	n341087|CR595419|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3553|NULL|-0.9495920|-0.3615001	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341087|CR595419|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3553|NULL|-0.9495920|-0.3615001	chr11	 82962568	 82964608	-	NA	NA	NA	NA	CCDC90B	NA	chr11:82972506-82974609	inter
CUST_21577_PI429285431	5.5437737	P	5.57549	P	0.978255824487339	0	lncRNA	23191-1_{1..1142}	lnc-C16orf93-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf93-1:1	chr16	 30709457	 30710598	-	lnc-C16orf93-1	lnc-C16orf93-1:1	ENSG00000261840.1	RP11-146F11.1	SRCAP	NA	chr16:30710462-30720379	inner
CUST_1878_PI429285431	2.5401938	A	1.9851793	A	1.4691833994289	0	lncRNA	1868-1_{1..1623}	"transcript_id ""ENST00000514265.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514265.1"" | genecode_v17"	chr4	129489127	129490749	-	ENSG00000248187.1	ENST00000514265.1	RP11-184M15.1	RP11-184M15.1-001	NA	NA	NA	inter
CUST_34328_PI429285431	0.91981417	A	1.0937619	A	0.886413814097478	0	lncRNA	35821-1_{1..2274}	n341191|BC047638|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3657|NULL|-1.2447800|-0.3705679	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341191|BC047638|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3657|NULL|-1.2447800|-0.3705679	chr7	 16250117	 16252390	+	NA	NA	NA	NA	ISPD	NA	chr7:16240117-16320643	inter
CUST_3571_PI429285431	9.186255	P	9.433125	P	0.842722763099885	0	lncRNA	3541-1_{1..1278}	"transcript_id ""ENST00000540522.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000540522.1"" | genecode_v17"	chr9	141106637	141107914	+	ENSG00000233013.4	ENST00000540522.1	FAM157B	FAM157B-201	FAM157B	NA	chr9:141106637-141134172	inner
CUST_46449_PI429285431	3.7256262	P	3.7881238	P	0.957604873723933	0	lncRNA	50656-1_{1..1156}	"gi|338827631|ref|NR_040058.1| Homo sapiens uncharacterized LOC100505648 (LOC100505648), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338827631|ref|NR_040058.1| Homo sapiens uncharacterized LOC100505648 (LOC100505648), non-coding RNA"	Chr15	 40985932	 40987087	-	100505648	NR_040058.1	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20"	NA	inter
CUST_9772_PI429285431	1.2848786	A	1.0669684	A	1.1630476458397	0	lncRNA	11289-1_{1..933}	lnc-RREB1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RREB1-3:1	chr6	  6918743	  6919675	+	lnc-RREB1-3	lnc-RREB1-3:1	XLOC_005152	linc-RREB1-2	NA	NA	NA	inter
CUST_26070_PI429285431	6.2896976	P	6.273939	P	1.01098290324613	0	lncRNA	27583-1_{1..509}	lnc-NRL-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NRL-1:5	chr14	 24422983	 24423491	-	lnc-NRL-1	lnc-NRL-1:5	ENSG00000215256.3	DHRS4-AS1	DHRS4	"hg19_refFlat_DHRS4L1:range=chr14:24505710-245201775'pad=0,hg19_refFlat_DHRS4L1:range=chr14:24505710-245201775'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_DHRS4L2:range=chr14:24458157-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24458157-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_DHRS4:range=chr14:24422998-244380805'pad=0,hg19_refFlat_DHRS4:range=chr14:24422998-244380805'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.10chr14:24422965-24433061"	NA	inner
CUST_22535_PI429285431	0.93515164	A	0.957068	A	0.984923542015469	0	lncRNA	24123-1_{1..861}	lnc-TCTEX1D1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCTEX1D1-1:1	chr1	 67293511	 67294371	+	lnc-TCTEX1D1-1	lnc-TCTEX1D1-1:1	ENSG00000231080.1	RP11-342H21.2	WDR78	"hg19_refFlat_WDR78:range=chr1:67279813-673905145'pad=0,hg19_refFlat_WDR78:range=chr1:67279813-673905145'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr1:67283511-67304241"	NA	inner
LNCA_32_P472875	0.9799918	A	1.116016	A	0.910023559070477	0	lncRNA	XR_132735	XR_132735	XR_132735	100132234	Hs.197435	LOC100132234	uncharacterized LOC100132234	NA	THC2719785	NA	"PREDICTED: Homo sapiens hypothetical LOC100132234 (LOC100132234), miscRNA [XR_132735]"	chr13:28528445-28528504	hs|13q12.2	Agilent_HUMAN_G3V2	XR_132735	XR_132735	chr13	 28528445	 28528504	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13832_PI429285431	1.1016097	A	1.1437984	A	0.971180459866638	0	lncRNA	15475-1_{1..358}	lnc-AC021218.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC021218.2.1-2:1	chr7	156028704	156029061	+	lnc-AC021218.2.1-2	lnc-AC021218.2.1-2:1	XLOC_006308	linc-RNF32-1	NA	NA	NA	inter
LNCA_21_P0004030	0.99048334	A	2.1912413	A	0.43504665772433	0	lncRNA	ENST00000507217	NA	NA	NA	NA	XLOC_004470	NA	ENST00000507217	NA	NA	"BROAD Institute lincRNA (XLOC_004470), lincRNA [TCONS_00009460]"	chr5:91751321-91751380	hs|5q14.3	Agilent_HUMAN_G3V2	ENST00000507217	ENST00000507217	chr5	 91751321	 91751380	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31055_PI429285431	10.11284	P	10.395306	P	0.822184454823326	0	lncRNA	32845-1_{1..353}	n337279|BC128040|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389586|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389586|1.1733700|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337279|BC128040|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389586|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389586|1.1733700|-1.0000000	chr12	  9436254	  9436606	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44162_PI429285431	4.5614166	P	3.3111122	A	2.37891611408708	0	lncRNA	48822-1_{1..1232}	"gi|310119205|ref|XR_110003.1| PREDICTED: Homo sapiens uncharacterized STGC3 (STGC3), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119205|ref|XR_110003.1| PREDICTED: Homo sapiens uncharacterized STGC3 (STGC3), misc_RNA"	NA	NA	NA	NA	NA	XR_110003.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90"	NA	Unknown
CUST_37344_PI429285431	4.1601315	P	3.7000093	P	1.37565833502273	0	lncRNA	38448-1_{1..616}	n345787|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1336|NULL|-1.5346500|-0.2960661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345787|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1336|NULL|-1.5346500|-0.2960661	chr5	 42813782	 42814397	+	NA	NA	NA	NA	SEPP1	"hg19_refFlat_PPIAL4A:range=chr1:149553078-1495535725'pad=0,hg19_refFlat_PPIAL4A:range=chr1:149553078-1495535725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIA:range=chr7:44836324-448410215'pad=0,hg19_refFlat_PPIA:range=chr7:44836324-448410215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIAL4B:range=chr1:144363677-1443641715'pad=0,hg19_refFlat_PPIAL4B:range=chr1:144363677-1443641715'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIAL4A:range=chr1:144363677-1443641715'pad=0,hg19_refFlat_PPIAL4A:range=chr1:144363677-1443641715'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIAL4C:range=chr1:149553078-1495535725'pad=0,hg19_refFlat_PPIAL4C:range=chr1:149553078-1495535725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIAL4A:range=chr1:147954850-1479553445'pad=0,hg19_refFlat_PPIAL4A:range=chr1:147954850-1479553445'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIAL4E:range=chr1:148644086-1486445805'pad=0,hg19_refFlat_PPIAL4E:range=chr1:148644086-1486445805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIAL4D:range=chr1:148806090-1488065845'pad=0,hg19_refFlat_PPIAL4D:range=chr1:148806090-1488065845'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIAL4F:range=chr1:148806090-1488065845'pad=0,hg19_refFlat_PPIAL4F:range=chr1:148806090-1488065845'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIAL4B:range=chr1:147954850-1479553445'pad=0,hg19_refFlat_PPIAL4B:range=chr1:147954850-1479553445'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIAL4F:range=chr1:148201967-1482024615'pad=0,hg19_refFlat_PPIAL4F:range=chr1:148201967-1482024615'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIAL4B:range=chr1:149553078-1495535725'pad=0,hg19_refFlat_PPIAL4B:range=chr1:149553078-1495535725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIAL4G:range=chr1:143767354-1437678485'pad=0,hg19_refFlat_PPIAL4G:range=chr1:143767354-1437678485'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIAL4C:range=chr1:144363677-1443641715'pad=0,hg19_refFlat_PPIAL4C:range=chr1:144363677-1443641715'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIAL4D:range=chr1:148201967-1482024615'pad=0,hg19_refFlat_PPIAL4D:range=chr1:148201967-1482024615'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40chr5:42803782-42812024"	NA	inter
CUST_2050_PI429285431	0.9704273	A	0.9129623	A	1.04063562332054	0	lncRNA	2042-1_{1..540}	"transcript_id ""ENST00000513925.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513925.1"" | genecode_v17"	chr5	  4640844	  4641383	+	ENSG00000251371.1	ENST00000513925.1	CTD-2318H23.1	CTD-2318H23.1-001	NA	NA	NA	inter
CUST_23961_PI429285431	2.312022	A	3.0820916	A	0.586389184734446	0	lncRNA	25516-2_{3001..4335}	lnc-C11orf39-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C11orf39-2:1	chr11	131413711	131415045	-	lnc-C11orf39-2	lnc-C11orf39-2:1	ENSG00000237654.1	AP003025.2	NTM	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20chr11:131400711-131420761"	NA	inner
CUST_15349_PI429285431	1.3738872	A	1.2830801	A	1.06496579932919	0	lncRNA	17030-1_{1..921}	lnc-WNT3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WNT3-1:1	chr17	 44910130	 44911050	-	lnc-WNT3-1	lnc-WNT3-1:1	XLOC_012496	linc-WNT3	LOC644366	NA	chr17:44907961-44910586	inter
LNCA_21_P0006758	4.26046	P	4.501039	P	0.846405554371096	0	lncRNA	ENST00000440750	NA	NA	NA	NA	XLOC_008815	NA	ENST00000440750	NA	NA	"BROAD Institute lincRNA (XLOC_008815), lincRNA [TCONS_00017977]"	chr10:49872303-49872244	hs|10q11.22	Agilent_HUMAN_G3V2	ENST00000440750	ENST00000440750	chr10	 49872244	 49872303	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42468_PI429285431	9.999331	P	10.073765	P	0.949714641158568	0	lncRNA	45216-1_{1..80}	ENST00000581525 ncrna:snoRNA chromosome:GRCh37:1:45241536:45241615:1 gene:ENSG00000264294 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581525 ncrna:snoRNA chromosome:GRCh37:1:45241536:45241615:1 gene:ENSG00000264294 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 45241536	 45241615	+	ENSG00000264294	ENST00000581525	NA	NA	KIF2C	NA	chr1:45231536-45233439	inter
CUST_4320_PI429285431	0.92633164	A	0.932765	A	0.995550662415861	0	lncRNA	4275-1_{1..1256}	"transcript_id ""ENST00000550723.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550723.1"" | genecode_v17"	chr12	 73552970	 73554225	+	ENSG00000258123.1	ENST00000550723.1	RP11-314D7.2	RP11-314D7.2-001	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10"	NA	inter
CUST_2589_PI429285431	0.92927694	A	0.92172563	A	1.00524789143081	0	lncRNA	2577-1_{1..433}	"transcript_id ""ENST00000443234.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443234.1"" | genecode_v17"	chr6	100441820	100442252	+	ENSG00000229315.1	ENST00000443234.1	RP11-14I4.3	RP11-14I4.3-003	MCHR2	NA	chr6:100431820-100442114	inner
CUST_26114_PI429285431	1.6606773	A	1.546138	A	1.08262927116892	0	lncRNA	27625-1_{1..420}	lnc-KLHL31-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL31-4:1	chr6	 54234709	 54235128	-	lnc-KLHL31-4	lnc-KLHL31-4:1	ENSG00000228231.2	RP11-124I4.2	TINAG	NA	chr6:54224709-54244769	inner
CUST_24709_PI429285431	2.3780737	A	3.6898494	P	0.402824768996225	0	lncRNA	26255-1_{1..970}	lnc-CDIPT-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDIPT-1:2	chr16	 29832199	 29833168	-	lnc-CDIPT-1	lnc-CDIPT-1:2	ENSG00000261690.1	AC009133.12	MAZ	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.30;hg19_refFlat_PAGR1:range=chr16:29827847-298310755'pad=0,hg19_refFlat_PAGR1:range=chr16:29827847-298310755'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.00chr16:29822199-29822504"	NA	inner
CUST_17717_PI429285431	2.5493214	A	3.305697	P	0.591981665756078	0	lncRNA	19447-1_{1..460}	lnc-C20orf196-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf196-3:1	chr20	  5466795	  5467254	+	lnc-C20orf196-3	lnc-C20orf196-3:1	XLOC_013448	linc-C20orf196-2	NA	NA	NA	inter
CUST_39993_PI429285431	1.5889342	A	1.5198009	A	1.04908625501527	0	lncRNA	40859-1_{1..971}	n407108|NR_024610|lncRNA|Homosapiens||RefGeneNoncode|NR_024610||1.2398000|-0.2897647	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407108|NR_024610|lncRNA|Homosapiens||RefGeneNoncode|NR_024610||1.2398000|-0.2897647	chr5	130494874	130495844	-	NA	NA	NA	NA	HINT1	NA	chr5:130494875-130501034	inter
CUST_31816_PI429285431	1.2459577	A	0.9244205	A	1.24966136126742	0	lncRNA	33554-1_{1..962}	n338363|BC039046|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|758|NULL|-1.0103700|-0.4102549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338363|BC039046|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|758|NULL|-1.0103700|-0.4102549	chr14	 69764390	 69765351	-	NA	NA	NA	NA	GALNTL1	NA	chr14:69754390-69775317	inner
CUST_42119_PI429285431	1.4737506	A	1.3428979	A	1.09494067100902	0	lncRNA	44092-1_{1..86}	ENST00000384872 ncrna:miRNA chromosome:GRCh37:6:52009147:52009232:1 gene:ENSG00000207604 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384872 ncrna:miRNA chromosome:GRCh37:6:52009147:52009232:1 gene:ENSG00000207604 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 52009147	 52009232	+	ENSG00000207604	ENST00000384872	NA	NA	NA	NA	NA	inter
CUST_5508_PI429285431	0.9815665	A	1.439553	A	0.728001586733009	0	lncRNA	5439-1_{1..552}	"transcript_id ""ENST00000568121.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000568121.1"" | genecode_v17"	chr16	 34213115	 34213666	-	ENSG00000260854.1	ENST00000568121.1	CTD-2144E22.8	CTD-2144E22.8-001	NA	NA	NA	inter
CUST_1361_PI429285431	0.92169106	A	1.3416028	A	0.747470351039591	0	lncRNA	1349-1_{1..1428}	"transcript_id ""ENST00000465684.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000465684.1"" | genecode_v17"	chr3	 62936133	 62937560	+	ENSG00000244342.1	ENST00000465684.1	LINC00698	LINC00698-002	NA	NA	NA	inter
CUST_22868_PI429285431	1.4798396	A	1.9726857	A	0.710621823380017	0	lncRNA	24445-1_{1..514}	lnc-CCDC23-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC23-1:1	chr1	 43312031	 43312544	-	lnc-CCDC23-1	lnc-CCDC23-1:1	ENSG00000243153.1	RP11-342M1.4	ERMAP	"hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_ERMAP:range=chr1:43296120-433089035'pad=0,hg19_refFlat_ERMAP:range=chr1:43296120-433089035'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80chr1:43302031-43310660"	NA	inter
CUST_36473_PI429285431	9.235503	P	9.010059	P	1.16913700370367	0	lncRNA	37679-3_{6001..6288}	n344979|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_528|NULL|-1.4060700|-0.2391732	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344979|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_528|NULL|-1.4060700|-0.2391732	chr8	 61828244	 61828531	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NASP:range=chr1:46049819-460838135'pad=0,hg19_refFlat_NASP:range=chr1:46049819-460838135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60"	NA	inter
CUST_48936_PI429285431	0.92845464	A	1.3633736	A	0.739735306347989	0	lncRNA	52778-1_{1..385}	hg19_lincRNAsTranscripts_TCONS_l2_00019568 range=chr3:149983201-150014336 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019568 range=chr3:149983201-150014336 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	149983201	149983585	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22920_PI429285431	5.24782	P	4.433883	P	1.75800235122186	0	lncRNA	24496-1_{1..433}	lnc-NAA60-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NAA60-1:1	chr16	  3565508	  3565940	+	lnc-NAA60-1	lnc-NAA60-1:1	ENSG00000263212.1	LA16c-306E5.3	CLUAP1	NA	chr16:3555508-3575564	inner
CUST_16797_PI429285431	6.043794	P	6.170391	P	0.915989521652577	0	lncRNA	18505-1_{1..318}	lnc-BCL6-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BCL6-3:3	chr3	187679076	187679393	-	lnc-BCL6-3	lnc-BCL6-3:3	XLOC_003365	linc-BCL6-6	NA	NA	NA	inter
CUST_20646_PI429285431	0.9196509	A	1.1216996	A	0.869315214757631	0	lncRNA	22285-1_{1..751}	lnc-TRAFD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRAFD1-1:1	chr12	112696199	112696949	+	lnc-TRAFD1-1	lnc-TRAFD1-1:1	ENSG00000257494.1	RP3-521E19.2	C12orf51	"hg19_refFlat_HECTD4:range=chr12:112600191-1127572915'pad=0,hg19_refFlat_HECTD4:range=chr12:112600191-1127572915'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20chr12:112686199-112706895"	NA	inner
CUST_5156_PI429285431	2.8690405	P	2.5147104	P	1.27839183587303	0	lncRNA	5097-1_{1..3000}	"transcript_id ""ENST00000559030.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559030.1"" | genecode_v17"	chr15	 40604816	 40607815	+	ENSG00000259198.1	ENST00000559030.1	RP11-133K1.6	RP11-133K1.6-001	PLCB2	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_RPLP0:range=chr12:120634576-1206385865'pad=0,hg19_refFlat_RPLP0:range=chr12:120634576-1206385865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40chr15:40594816-40600174"	NA	inter
CUST_33278_PI429285431	1.4729114	A	1.0063607	A	1.38180180355516	0	lncRNA	34862-1_{1..1686}	n339987|BC041434|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2440|NULL|-1.1340500|-0.2485223	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339987|BC041434|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2440|NULL|-1.1340500|-0.2485223	chr4	 47916243	 47917928	+	NA	NA	NA	NA	CNGA1	NA	chr4:47937994-48002754	inner
CUST_28711_PI429285431	3.2428784	P	3.819094	P	0.670720870725856	0	lncRNA	30411-1_{1..590}	n326101|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046502|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046502|-0.5804870|-0.3426030	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326101|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046502|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046502|-0.5804870|-0.3426030	chr10	  3966710	  3967299	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35335_PI429285431	1.6523967	A	1.8522761	A	0.87062333874988	0	lncRNA	36745-1_{1..786}	n342375|CR619240|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4867|NULL|-0.6529670|-0.2219049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342375|CR619240|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4867|NULL|-0.6529670|-0.2219049	chr13	 28882716	 28883501	+	NA	NA	NA	NA	FLT1	"hg19_refFlat_FLT1:range=chr13:28877304-290689805'pad=0,hg19_refFlat_FLT1:range=chr13:28877304-290689805'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30chr13:28874483-28893502"	NA	inner
CUST_22850_PI429285431	8.70113	P	8.266427	P	1.3516325509382	0	lncRNA	24428-1_{1..883}	lnc-EXOSC6-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EXOSC6-3:4	chr16	 70055727	 70056609	-	lnc-EXOSC6-3	lnc-EXOSC6-3:4	ENSG00000196696.7	PDXDC2P	NA	NA	NA	inter
CUST_6220_PI429285431	1.1450162	A	0.8984581	A	1.18637335377616	0	lncRNA	6146-1_{1..417}	"transcript_id ""ENST00000591331.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591331.1"" | genecode_v17"	chr18	 57027932	 57028348	+	ENSG00000267677.1	ENST00000591331.1	RP11-27G24.1	RP11-27G24.1-001	LMAN1	NA	chr18:57017932-57026508	inter
CUST_29034_PI429285431	1.0144216	A	1.0489917	A	0.976322645935405	0	lncRNA	30763-1_{1..2171}	n326524|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029603|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029603|1.9453500|-0.3373564	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326524|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029603|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029603|1.9453500|-0.3373564	chr1	 94823699	 94825869	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40"	NA	inter
CUST_33550_PI429285431	1.0935736	A	0.90832895	A	1.13700976925161	0	lncRNA	35118-1_{1..572}	n340299|AF086267|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2760|NULL|-0.8758120|-0.2234171	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340299|AF086267|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2760|NULL|-0.8758120|-0.2234171	chr5	   195892	   196463	+	NA	NA	NA	NA	PLEKHG4B	NA	chr5:185892-190087	inter
CUST_28360_PI429285431	0.9125295	A	1.1150287	A	0.869043802328587	0	lncRNA	30009-1_{1..840}	n325669|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045414|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045414|-1.1654300|-0.2939656	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325669|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045414|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045414|-1.1654300|-0.2939656	chr13	 87035113	 87035952	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18440_PI429285431	0.92165947	A	1.1582786	A	0.848731936486323	0	lncRNA	20163-1_{1..769}	lnc-GTF2F2-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2F2-2:8	chr13	 45944094	 45944862	+	lnc-GTF2F2-2	lnc-GTF2F2-2:8	ENSG00000170919	XXyac-R12DG2.2	NA	NA	NA	inter
CUST_3407_PI429285431	0.9419508	A	0.93003273	A	1.00829519263991	0	lncRNA	3379-1_{1..767}	"transcript_id ""ENST00000593047.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593047.1"" | genecode_v17"	chr9	 42469953	 42470719	+	ENSG00000223839.3	ENST00000593047.1	FAM95B1	FAM95B1-012	CBWD7	NA	chr9:42478004-42484147	inter
CUST_39795_PI429285431	5.3278875	P	4.2630873	P	2.09188015335341	0	lncRNA	40705-1_{1..2893}	n406177|NR_003595|lncRNA|Homosapiens||RefGeneNoncode|NR_003595||7.6818400|-0.2913374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406177|NR_003595|lncRNA|Homosapiens||RefGeneNoncode|NR_003595||7.6818400|-0.2913374	chr7	 48964156	 48967048	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23690_PI429285431	6.899823	P	6.8724794	P	1.01913389011626	0	lncRNA	25255-1_{1..468}	lnc-OR4F29-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR4F29-1:1	chr1	   328311	   328778	+	lnc-OR4F29-1	lnc-OR4F29-1:1	ENSG00000240876.1	RP4-669L17.11	LOC100288646	NA	chr1:327463-338455	inter
CUST_14175_PI429285431	0.89856374	A	0.90138733	A	0.998044750547952	0	lncRNA	15828-1_{1..563}	lnc-MAGI1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAGI1-1:1	chr3	 65160258	 65160820	-	lnc-MAGI1-1	lnc-MAGI1-1:1	XLOC_003151	linc-ADAMTS9-3	NA	NA	NA	inter
CUST_16736_PI429285431	0.9138171	A	1.1908226	A	0.825302262199011	0	lncRNA	18443-1_{1..957}	lnc-C3orf65-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C3orf65-2:1	chr3	185545008	185545964	+	lnc-C3orf65-2	lnc-C3orf65-2:1	XLOC_002956	linc-DNAJB11-5	IGF2BP2	NA	chr3:185535008-185542827	inter
CUST_50478_PI429285431	1.2444724	A	1.0652725	A	1.13225577674001	0	lncRNA	54178-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030277 range=chrX:100699084-100750930 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030277 range=chrX:100699084-100750930 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	100699084	100702083	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_43624_PI429285431	7.9138155	P	7.675352	P	1.17973554940991	0	lncRNA	48384-1_{1..3000}	"gi|357933607|ref|NR_045553.1| Homo sapiens thrombospondin 3 (THBS3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|357933607|ref|NR_045553.1| Homo sapiens thrombospondin 3 (THBS3), transcript variant 4, non-coding RNA"	Chr1	155165379	155168378	-	7059	NR_045553.1	NA	NA	NA	NA	NA	inter
CUST_23280_PI429285431	12.430437	P	12.750686	P	0.800931629947854	0	lncRNA	24851-1_{1..470}	lnc-RPL7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPL7-1:2	chr8	 74268527	 74268996	-	lnc-RPL7-1	lnc-RPL7-1:2	ENSG00000250295.2	RP11-434I12.2	NA	NA	NA	inter
CUST_40079_PI429285431	8.834235	P	8.65215	P	1.13452232619777	0	lncRNA	40926-1_{1..2573}	n407373|NR_026826|lncRNA|Homosapiens||RefGeneNoncode|NR_026826||10.8905000|-0.0945978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407373|NR_026826|lncRNA|Homosapiens||RefGeneNoncode|NR_026826||10.8905000|-0.0945978	chr8	 28625174	 28627746	-	NA	NA	NA	NA	INTS9	NA	chr8:28625175-28747698	inner
CUST_45067_PI429285431	0.9426127	A	1.2727993	A	0.79543359471468	0	lncRNA	49553-4_{9001..10079}	"gi|374349220|ref|NR_046216.1| Homo sapiens uncharacterized protein MGC27345 (MGC27345), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|374349220|ref|NR_046216.1| Homo sapiens uncharacterized protein MGC27345 (MGC27345), non-coding RNA"	Chr7	127946738	127947816	-	157247	NR_046216.1	NA	NA	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10"	NA	inter
CUST_5445_PI429285431	10.791101	P	10.963862	P	0.887143259062317	0	lncRNA	5379-1_{1..621}	"transcript_id ""ENST00000602805.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602805.1"" | genecode_v17"	chr16	 18581770	 18582390	-	ENSG00000260550.2	ENST00000602805.1	RP11-457I16.2	RP11-457I16.2-002	NOMO2	NA	chr16:18571770-18573434	inter
CUST_28232_PI429285431	1.1053427	A	2.2750409	A	0.444514319616853	0	lncRNA	29867-1_{1..387}	n325523|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000134075|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000134075|-1.0727200|-0.6656493	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325523|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000134075|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000134075|-1.0727200|-0.6656493	chr18	 59974428	 59974814	+	NA	NA	NA	NA	KIAA1468	NA	chr18:59964428-59974355	inter
CUST_27779_PI429285431	6.6124725	P	6.472816	P	1.10164278784473	0	lncRNA	29364-1_{1..714}	n324999|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000276659|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000276659|-0.9028350|-0.4240195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324999|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000276659|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000276659|-0.9028350|-0.4240195	chr20	 35554287	 35555000	-	NA	NA	NA	NA	SAMHD1	NA	chr20:35544287-35580246	inner
CUST_9874_PI429285431	5.018782	P	4.942265	P	1.05446923211945	0	lncRNA	11397-1_{1..450}	lnc-ADAMTS17-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAMTS17-1:6	chr15	100889513	100889962	-	lnc-ADAMTS17-1	lnc-ADAMTS17-1:6	XLOC_011609	linc-ADAMTS17	ADAMTS17	NA	chr15:100879513-100882183	inter
CUST_28450_PI429285431	0.9155511	A	0.9148152	A	1.00051021712668	0	lncRNA	30110-1_{1..593}	n325777|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044352|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044352|-1.1566900|-0.3415792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325777|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044352|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044352|-1.1566900|-0.3415792	chr13	 29829401	 29829993	-	NA	NA	NA	NA	MTUS2	NA	chr13:29819401-29846333	inner
CUST_24122_PI429285431	0.92071205	A	1.1824311	A	0.834093459120414	0	lncRNA	25672-1_{1..2069}	lnc-WDPCP-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-WDPCP-1:3	chr2	 63274571	 63276639	-	lnc-WDPCP-1	lnc-WDPCP-1:3	ENSG00000231609.1	AC009501.4	EHBP1	"hg19_refFlat_EHBP1:range=chr2:62934327-632726355'pad=0,hg19_refFlat_EHBP1:range=chr2:62934327-632726355'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80chr2:63264571-63273622"	NA	inter
CUST_2587_PI429285431	1.0902851	A	1.2155155	A	0.916857608333946	0	lncRNA	2575-1_{1..771}	"transcript_id ""ENST00000418652.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418652.1"" | genecode_v17"	chr6	 98657896	 98658666	+	ENSG00000236920.1	ENST00000418652.1	RP11-111D3.2	RP11-111D3.2-001	NA	NA	NA	inter
CUST_20611_PI429285431	6.5031996	P	6.653281	P	0.901199613529077	0	lncRNA	22250-1_{1..402}	lnc-AC009113.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC009113.1-1:1	chr16	 89364559	 89364960	+	lnc-AC009113.1-1	lnc-AC009113.1-1:1	ENSG00000260279.1	AC137932.5	ANKRD11	NA	chr16:89354559-89374717	inter
CUST_40448_PI429285431	3.9745634	P	4.2811103	P	0.808574773958406	0	lncRNA	41223-2_{3001..4690}	n409346|NR_033709|lncRNA|Homosapiens||RefGeneNoncode|NR_033709||1.7795700|-0.1681109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409346|NR_033709|lncRNA|Homosapiens||RefGeneNoncode|NR_033709||1.7795700|-0.1681109	chr1	  3655547	  3657236	-	NA	NA	NA	NA	CCDC27	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50chr1:3668965-3673937"	NA	inter
CUST_44646_PI429285431	1.6954923	A	1.4132441	A	1.21608847999192	0	lncRNA	49210-1_{1..634}	"gi|310119676|ref|XR_110078.1| PREDICTED: Homo sapiens uncharacterized LOC100507546, transcript variant 2 (LOC100507546), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310119676|ref|XR_110078.1| PREDICTED: Homo sapiens uncharacterized LOC100507546, transcript variant 2 (LOC100507546), misc_RNA"	NA	NA	NA	NA	NA	XR_110078.1	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	Unknown
CUST_20597_PI429285431	0.9922596	A	1.2808812	A	0.818683883485077	0	lncRNA	22236-1_{1..646}	lnc-SGSH-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SGSH-1:5	chr17	 78177891	 78178536	-	lnc-SGSH-1	lnc-SGSH-1:5	ENSG00000262580.1	RP11-334C17.5	CARD14	"hg19_refFlat_CARD14:range=chr17:78155238-781821445'pad=0,hg19_refFlat_CARD14:range=chr17:78155238-781821445'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20;hg19_refFlat_CARD14:range=chr17:78155238-781762235'pad=0,hg19_refFlat_CARD14:range=chr17:78155238-781762235'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20chr17:78167891-78182851"	NA	inner
CUST_2711_PI429285431	0.98826015	A	1.1568083	A	0.889737614437657	0	lncRNA	2696-1_{1..205}	"transcript_id ""ENST00000439207.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439207.1"" | genecode_v17"	chr6	167655379	167655583	+	ENSG00000228648.1	ENST00000439207.1	RP11-568A7.2	RP11-568A7.2-001	UNC93A	NA	chr6:167645379-167669404	inter
CUST_40233_PI429285431	2.1562452	A	1.4120344	A	1.67505770890686	0	lncRNA	41053-1_{1..3000}	n408094|NR_028026|lncRNA|Homosapiens||RefGeneNoncode|NR_028026||5.7316600|-0.3688183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408094|NR_028026|lncRNA|Homosapiens||RefGeneNoncode|NR_028026||5.7316600|-0.3688183	chr11	 85368607	 85371606	-	NA	NA	NA	NA	TMEM126A	NA	chr11:85358963-85367597	inter
CUST_25430_PI429285431	0.94169754	A	0.91888654	A	1.01593704162908	0	lncRNA	26960-1_{1..624}	lnc-PTP4A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTP4A2-1:1	chr1	 32538938	 32539561	-	lnc-PTP4A2-1	lnc-PTP4A2-1:1	ENSG00000203325.3	RP11-277A4.4	TMEM39B	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40chr1:32538503-32549075"	NA	inner
CUST_22038_PI429285431	2.4927258	A	2.8442376	A	0.783762362916284	0	lncRNA	23647-1_{1..333}	lnc-ARMC10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARMC10-1:1	chr7	102671506	102671838	+	lnc-ARMC10-1	lnc-ARMC10-1:1	ENSG00000236226.1	RP11-645N11.3	FBXL13	NA	chr7:102661506-102681801	inner
CUST_13002_PI429285431	0.9021622	A	0.89594877	A	1.00431610917044	0	lncRNA	14629-1_{1..1838}	lnc-XPR1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-XPR1-2:3	chr1	180534387	180536224	+	lnc-XPR1-2	lnc-XPR1-2:3	XLOC_000477	linc-XPR1	NA	NA	NA	inter
CUST_35794_PI429285431	5.9583473	P	6.114829	P	0.897210431959236	0	lncRNA	37204-2_{3001..5133}	n344474|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_22|NULL|-1.3190300|-0.2802263	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344474|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_22|NULL|-1.3190300|-0.2802263	chr1	232257254	232259386	+	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90"	NA	inter
CUST_51109_PI429285431	3.4220388	P	2.598362	P	1.76991098013626	0	lncRNA	54746-2_{3001..4266}	hg19_lincRNAsTranscripts_TCONS_l2_00007295 range=chr13:97591376-97601835 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007295 range=chr13:97591376-97601835 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 97594376	 97595641	-	NA	NA	NA	NA	OXGR1	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chr13:97598849-97611835"	NA	inter
CUST_692_PI429285431	3.775422	P	4.174323	P	0.758435815958654	0	lncRNA	685-1_{1..839}	"transcript_id ""ENST00000589024.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589024.1"" | genecode_v17"	chr2	  6772393	  6773231	-	ENSG00000236172.2	ENST00000589024.1	AC097517.2	AC097517.2-042	NA	NA	NA	inter
LNCA_21_P0010182	0.92978567	A	1.9990513	A	0.476561519732034	0	lncRNA	ENST00000436373	NA	NA	NA	NA	XLOC_014018	NA	ENST00000436373	THC2628566	NA	"BROAD Institute lincRNA (XLOC_014018), lincRNA [TCONS_00028879]"	chr21:21629509-21629450	hs|21q21.1	Agilent_HUMAN_G3V2	ENST00000436373	ENST00000436373	chr21	 21629450	 21629509	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51100_PI429285431	10.338732	P	9.920804	P	1.33600740114334	0	lncRNA	54739-1_{1..1012}	hg19_lincRNAsTranscripts_TCONS_l2_00007244 range=chr13:66361679-66362786 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007244 range=chr13:66361679-66362786 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 66361679	 66362690	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37185_PI429285431	0.92677623	A	1.1568478	A	0.852592594841811	0	lncRNA	38299-2_{3001..6000}	n345618|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1167|NULL|-1.3440200|-0.4104422	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345618|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1167|NULL|-1.3440200|-0.4104422	chr4	160028826	160031825	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20"	NA	inter
CUST_4783_PI429285431	8.825769	P	9.036617	P	0.864029215315923	0	lncRNA	4727-1_{1..857}	"transcript_id ""ENST00000556620.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556620.1"" | genecode_v17"	chr14	 39944060	 39944916	+	ENSG00000258526.1	ENST00000556620.1	RP11-111A21.1	RP11-111A21.1-002	NA	NA	NA	inter
CUST_30853_PI429285431	7.034046	P	7.1979403	P	0.892612366908823	0	lncRNA	32641-1_{1..216}	n336843|AJ867758|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330158|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330158|1.3565800|-0.0205343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336843|AJ867758|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330158|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330158|1.3565800|-0.0205343	chr22	 24376533	 24376748	-	NA	NA	NA	NA	GSTT1	NA	chr22:24376139-24384284	inner
CUST_41828_PI429285431	0.91081035	A	0.89942074	A	1.00792592118347	0	lncRNA	43428-1_{1..77}	ENST00000579676 ncrna:miRNA chromosome:GRCh37:8:29814788:29814864:-1 gene:ENSG00000264788 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579676 ncrna:miRNA chromosome:GRCh37:8:29814788:29814864:-1 gene:ENSG00000264788 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 29814788	 29814864	-	ENSG00000264788	ENST00000579676	NA	NA	NA	NA	NA	inter
CUST_38772_PI429285431	7.547926	P	8.515581	P	0.511336529543953	0	lncRNA	39764-1_{1..707}	n384394|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fxi.2||2.4174700|-0.1719687	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384394|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fxi.2||2.4174700|-0.1719687	chr3	196728612	196729318	-	NA	NA	NA	NA	MFI2	NA	chr3:196718612-196739319	inner
CUST_253_PI429201921	0.93144286	A	0.9196338	A	1.00821900875948	0	lncRNA	189-3_{6001..6414}	TC0Y000329.hg.1	TCONS_l2_00031052-XLOC_l2_015954 // Broad TUCP // linc-KDM5D-3 chrY:-:23557033-23563448 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:23557033-23563448	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031052-XLOC_l2_015954	linc-KDM5D-3	chrY	 23557033	 23563448	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8104_PI429285431	1.5584514	A	1.4076412	A	1.11019276779858	0	lncRNA	9709-1_{1..2900}	lnc-SIGLEC16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SIGLEC16-1:1	chr19	 50489860	 50492759	+	lnc-SIGLEC16-1	lnc-SIGLEC16-1:1	ENSG00000250401	ENST00000505832	VRK3	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80chr19:50479860-50500961"	NA	inner
CUST_42775_PI429285431	0.89860845	A	0.8945582	A	1.00281136386023	0	lncRNA	45759-1_{1..71}	ENST00000516335 ncrna:snoRNA chromosome:GRCh37:14:101405405:101405475:1 gene:ENSG00000252144 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516335 ncrna:snoRNA chromosome:GRCh37:14:101405405:101405475:1 gene:ENSG00000252144 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101405405	101405475	+	ENSG00000252144	ENST00000516335	NA	NA	NA	NA	NA	inter
CUST_17787_PI429285431	0.90476036	A	0.9029855	A	1.00123099625956	0	lncRNA	19519-1_{1..518}	lnc-IGSF11-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGSF11-2:4	chr3	117409738	117410255	-	lnc-IGSF11-2	lnc-IGSF11-2:4	XLOC_003222	linc-LSAMP-2	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70"	NA	inter
CUST_27699_PI429285431	2.544248	A	2.7048144	A	0.894673754338922	0	lncRNA	29278-1_{1..695}	n324907|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000157919|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000157919|-1.0395300|-0.2598316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324907|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000157919|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000157919|-1.0395300|-0.2598316	chr21	 15055901	 15056595	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22642_PI429285431	3.543314	P	3.2942815	P	1.18840987640143	0	lncRNA	24228-1_{1..679}	lnc-CLEC18B-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLEC18B-2:3	chr16	 74343897	 74344575	-	lnc-CLEC18B-2	lnc-CLEC18B-2:3	ENSG00000259972.1	AC009120.6	PSMD7	"hg19_refFlat_PSMD7:range=chr16:74330813-743396315'pad=0,hg19_refFlat_PSMD7:range=chr16:74330813-743396315'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40chr16:74333897-74340186"	NA	inter
CUST_40998_PI429285431	1.4034773	A	2.4750042	A	0.475815145661208	0	lncRNA	41664-3_{6001..9000}	n411511|NR_039981|lncRNA|Homosapiens||RefGeneNoncode|NR_039981||-1.2098600|-0.3642356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411511|NR_039981|lncRNA|Homosapiens||RefGeneNoncode|NR_039981||-1.2098600|-0.3642356	chr7	104628193	104631192	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00"	NA	inter
CUST_41926_PI429285431	3.645936	P	4.283431	P	0.642828144487756	0	lncRNA	43672-1_{1..76}	ENST00000582039 ncrna:miRNA chromosome:GRCh37:8:124228028:124228103:-1 gene:ENSG00000266324 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582039 ncrna:miRNA chromosome:GRCh37:8:124228028:124228103:-1 gene:ENSG00000266324 gene_biotype:miRNA transcript_biotype:miRNA	chr8	124228028	124228103	-	ENSG00000266324	ENST00000582039	NA	NA	C8orf76	NA	chr8:124232196-124238103	inter
CUST_25064_PI429285431	4.520064	P	4.90672	P	0.764900502086438	0	lncRNA	26601-1_{1..413}	lnc-PTP4A3-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTP4A3-3:3	chr8	142337063	142337475	+	lnc-PTP4A3-3	lnc-PTP4A3-3:3	ENSG00000254291.1	RP11-10J21.6	NA	NA	NA	inter
CUST_23409_PI429285431	3.7446704	P	4.1004977	P	0.781421415810635	0	lncRNA	24977-1_{1..372}	lnc-USP47-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP47-1:1	chr11	 11595072	 11595443	+	lnc-USP47-1	lnc-USP47-1:1	ENSG00000255462.1	RP11-483L5.1	GALNTL4	NA	chr11:11585072-11605329	inner
CUST_30155_PI429285431	13.916917	P	13.525625	P	1.31156744726228	0	lncRNA	31929-1_{1..260}	n334829|AJ294851|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246658|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246658|-0.8530460|-0.2424470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334829|AJ294851|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246658|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246658|-0.8530460|-0.2424470	chr14	 94577083	 94577342	+	NA	NA	NA	NA	IFI27L1	NA	chr14:94567083-94569060	inner
CUST_14427_PI429285431	1.3630873	A	1.1641207	A	1.14787583894088	0	lncRNA	16088-1_{1..901}	lnc-IGFL1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGFL1-1:3	chr19	 46716586	 46717486	+	lnc-IGFL1-1	lnc-IGFL1-1:3	XLOC_013100	linc-IGFL1-1	IGFL1	NA	chr19:46722592-46726802	inter
LNCA_21_P0009551	9.737533	P	9.678733	P	1.0415990227138	0	lncRNA	TCONS_00026503	NA	NA	NA	NA	XLOC_012829	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012829), lincRNA [TCONS_00026503]"	chr18:39766438-39766379	hs|18q12.3	Agilent_HUMAN_G3V2	TCONS_00026503	TCONS_00026503	chr18	 39766379	 39766438	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28306_PI429285431	0.911548	A	0.90833646	A	1.00222854942938	0	lncRNA	29949-1_{1..561}	n325609|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316409|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316409|-0.2559750|-0.3729639	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325609|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316409|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316409|-0.2559750|-0.3729639	chr14	 98694505	 98695065	+	NA	NA	NA	NA	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90"	NA	inter
CUST_13866_PI429285431	1.197153	A	0.8989726	A	1.22959261051474	0	lncRNA	15510-1_{1..301}	lnc-C9orf16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf16-1:1	chr9	130921678	130921978	+	lnc-C9orf16-1	lnc-C9orf16-1:1	XLOC_007577	linc-C9orf16	CIZ1	NA	chr9:130928344-130931896	inter
CUST_29207_PI429285431	1.3917217	A	1.7075548	A	0.803386932214336	0	lncRNA	30954-1_{1..626}	n326726|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000002191|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000002191|-0.9858960|-0.2113823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326726|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000002191|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000002191|-0.9858960|-0.2113823	chr1	  2502858	  2503483	+	NA	NA	NA	NA	TNFRSF14	NA	chr1:2492858-2495268	inter
CUST_40773_PI429285431	4.0072975	P	3.6866927	P	1.24885397801759	0	lncRNA	41492-2_{3001..4403}	n410492|NR_037634|lncRNA|Homosapiens||RefGeneNoncode|NR_037634||5.3790800|-0.3527510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410492|NR_037634|lncRNA|Homosapiens||RefGeneNoncode|NR_037634||5.3790800|-0.3527510	chr1	 39331161	 39332563	-	NA	NA	NA	NA	RRAGC	NA	chr1:39318161-39325340	inter
CUST_32716_PI429285431	4.0467916	P	4.29893	P	0.839650940047665	0	lncRNA	34359-1_{1..1742}	n339347|AK130922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1779|NULL|-0.9361180|-0.2624057	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339347|AK130922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1779|NULL|-0.9361180|-0.2624057	chr3	 47388822	 47390563	+	NA	NA	NA	NA	KLHL18	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30chr3:47378822-47388306"	NA	inter
CUST_22846_PI429285431	5.386771	P	5.8550324	P	0.722835165862559	0	lncRNA	24425-1_{1..923}	lnc-TRPT1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRPT1-1:2	chr11	 64001666	 64002588	-	lnc-TRPT1-1	lnc-TRPT1-1:2	ENSG00000256116.1	RP11-783K16.14	NUDT22	"hg19_refFlat_NUDT22:range=chr11:63994125-639974625'pad=0,hg19_refFlat_NUDT22:range=chr11:63994125-639974625'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.60chr11:63993738-63997488"	NA	inner
CUST_40209_PI429285431	0.919791	A	0.90811324	A	1.00812725469618	0	lncRNA	41037-2_{3001..4622}	n408038|NR_027822_2|lncRNA|Homosapiens||RefGeneNoncode|NR_027822_2||-0.1993850|-0.1929681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408038|NR_027822_2|lncRNA|Homosapiens||RefGeneNoncode|NR_027822_2||-0.1993850|-0.1929681	chr6	  1524015	  1525636	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60"	NA	inter
CUST_46304_PI429285431	6.848405	P	6.4046664	P	1.36012439094511	0	lncRNA	50535-1_{1..865}	"gi|397139514|ref|XR_159024.1| PREDICTED: Homo sapiens uncharacterized LOC100996613 (LOC100996613), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139514|ref|XR_159024.1| PREDICTED: Homo sapiens uncharacterized LOC100996613 (LOC100996613), misc_RNA"	NA	NA	NA	NA	NA	XR_159024.1	NA	NA	NA	NA	NA	Unknown
CUST_6649_PI429285431	5.302553	P	5.446512	P	0.905032182658173	0	lncRNA	6595-1_{1..3000}	"transcript_id ""ENST00000456265.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456265.1"" | genecode_v17"	chr20	 12845850	 12848849	-	ENSG00000233048.1	ENST00000456265.1	RP5-1069C8.2	RP5-1069C8.2-001	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60"	NA	inter
CUST_38088_PI429285431	2.009792	A	2.6461313	A	0.643343301266647	0	lncRNA	39164-1_{1..1779}	n381083|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001bhi.3||0.7367430|-0.1776985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n381083|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001bhi.3||0.7367430|-0.1776985	chr1	 23907984	 23909762	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30"	NA	inter
CUST_2681_PI429285431	5.047118	P	5.446273	P	0.75830229797009	0	lncRNA	2667-1_{1..331}	"transcript_id ""ENST00000446887.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446887.1"" | genecode_v17"	chr6	159485760	159486090	-	ENSG00000226032.1	ENST00000446887.1	RP1-111C20.3	RP1-111C20.3-001	NA	NA	NA	inter
CUST_3658_PI429285431	0.9202069	A	1.0817839	A	0.894047259711974	0	lncRNA	3627-1_{1..293}	"transcript_id ""ENST00000457804.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457804.1"" | genecode_v17"	chr10	 37229037	 37229329	+	ENSG00000238176.1	ENST00000457804.1	RP11-322I2.1	RP11-322I2.1-001	ANKRD30A	NA	chr10:37232987-37242860	inter
CUST_29680_PI429285431	2.494592	A	2.5487366	A	0.963165352002727	0	lncRNA	31442-1_{1..383}	n333333|AY255536|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085512|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085512|2.2521100|-0.1033964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333333|AY255536|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085512|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085512|2.2521100|-0.1033964	chr7	 34851358	 34851740	+	NA	NA	NA	NA	NPSR1	NA	chr7:34841358-34898213	inter
CUST_40240_PI429285431	1.2622726	A	0.92050445	A	1.26730884131356	0	lncRNA	41058-1_{1..2062}	n408139|NR_028089|lncRNA|Homosapiens||RefGeneNoncode|NR_028089||8.9940100|-0.1894740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408139|NR_028089|lncRNA|Homosapiens||RefGeneNoncode|NR_028089||8.9940100|-0.1894740	chrX	101087084	101089145	-	NA	NA	NA	NA	NXF5	NA	chrX:101087085-101112549	inter
CUST_50118_PI429285431	1.9061263	A	1.2646115	A	1.55996623205329	0	lncRNA	53847-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00028808 range=chr9:69067000-69111952 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028808 range=chr9:69067000-69111952 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69070000	 69072999	+	NA	NA	NA	NA	LOC100507370	"hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.71chr9:69065490-69089939"	NA	inter
CUST_20947_PI429285431	1.1086076	A	2.2097425	A	0.466149653598599	0	lncRNA	22578-1_{1..458}	lnc-RP11-33N16.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-33N16.1.1-2:1	chr14	 89822671	 89823128	+	lnc-RP11-33N16.1.1-2	lnc-RP11-33N16.1.1-2:1	ENSG00000258699.1	RP11-356K23.2	FOXN3	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr14:89812671-89832915"	NA	inner
CUST_49021_PI429285431	7.6542854	P	6.96063	P	1.61737632646833	0	lncRNA	52849-1_{1..2350}	hg19_lincRNAsTranscripts_TCONS_l2_00021049 range=chr4:9036244-9154799 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021049 range=chr4:9036244-9154799 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  9036244	  9038593	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38275_PI429285431	0.9184926	A	0.9220524	A	0.997535576356959	0	lncRNA	39330-1_{1..1920}	n381864|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001rov.1||-0.3027420|-0.3063255	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381864|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001rov.1||-0.3027420|-0.3063255	chr12	 46288602	 46290521	-	NA	NA	NA	NA	ARID2	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.52;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RPL36AL:range=chr14:50085502-500858225'pad=0,hg19_refFlat_RPL36AL:range=chr14:50085502-500858225'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70chr12:46278602-46300522"	NA	inner
CUST_50252_PI429285431	3.5365777	P	3.1808326	P	1.27964630184543	0	lncRNA	53975-1_{1..1108}	hg19_lincRNAsTranscripts_TCONS_l2_00029352 range=chr9:68425848-68454914 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029352 range=chr9:68425848-68454914 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 68425848	 68426955	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15109_PI429285431	1.2538625	A	1.585014	A	0.794901772501692	0	lncRNA	16774-1_{1..3000}	lnc-AC069257.9.1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC069257.9.1-5:2	chr3	195374753	195377752	+	lnc-AC069257.9.1-5	lnc-AC069257.9.1-5:2	XLOC_002996	linc-MUC20-2	NA	"hg19_refFlat_PPP4R2:range=chr3:73046189-731148735'pad=0,hg19_refFlat_PPP4R2:range=chr3:73046189-731148735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	inter
CUST_35125_PI429285431	0.9114752	A	1.2307806	A	0.801455653578622	0	lncRNA	36528-1_{1..1000}	n342092|CR603803|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4574|NULL|-1.2027300|-0.2051440	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342092|CR603803|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4574|NULL|-1.2027300|-0.2051440	chr6	100015972	100016971	+	NA	NA	NA	NA	CCNC	NA	chr6:100005972-100016690	inner
LNCA_21_P0006081	0.9950625	A	0.96163416	A	1.023441287074	0	lncRNA	ENST00000424980	NA	NA	NA	NA	XLOC_007747	NA	ENST00000424980	NA	NA	"BROAD Institute lincRNA (XLOC_007747), lincRNA [TCONS_00015836]"	chr9:82120826-82120767	hs|9q21.31	Agilent_HUMAN_G3V2	ENST00000424980	ENST00000424980	chr9	 82120767	 82120826	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21842_PI429285431	1.3388196	A	1.7843573	A	0.734310584229786	0	lncRNA	23452-1_{1..584}	lnc-ESCO2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ESCO2-1:1	chr8	 27613820	 27614403	+	lnc-ESCO2-1	lnc-ESCO2-1:1	ENSG00000253875.1	RP11-16P20.3	CCDC25	NA	chr8:27603820-27623943	inner
CUST_45555_PI429285431	7.8696337	P	7.630141	P	1.18057745777416	0	lncRNA	49954-1_{1..338}	"gi|310120469|ref|XR_109024.1| PREDICTED: Homo sapiens uncharacterized LOC100505601 (LOC100505601), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310120469|ref|XR_109024.1| PREDICTED: Homo sapiens uncharacterized LOC100505601 (LOC100505601), misc_RNA"	NA	NA	NA	NA	NA	XR_109024.1	NA	NA	NA	NA	NA	Unknown
CUST_45270_PI429285431	2.337411	A	2.8669875	A	0.692758061837225	0	lncRNA	49720-2_{3001..4101}	"gi|377520146|ref|NR_046360.1| Homo sapiens family with sequence similarity 49, member B (FAM49B), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|377520146|ref|NR_046360.1| Homo sapiens family with sequence similarity 49, member B (FAM49B), transcript variant 4, non-coding RNA"	Chr8	130854839	130855939	-	51571	NR_046360.1	NA	NA	NA	NA	NA	inter
CUST_48896_PI429285431	3.7596817	P	3.822825	P	0.957176379066626	0	lncRNA	52735-1_{1..1428}	hg19_lincRNAsTranscripts_TCONS_l2_00018713 range=chr3:101426568-101439172 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018713 range=chr3:101426568-101439172 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	101426568	101427995	+	NA	NA	NA	NA	CEP97	NA	chr3:101443494-101449172	inter
CUST_41532_PI429285431	1.1278117	A	1.0920302	A	1.02511197019743	0	lncRNA	42789-1_{1..85}	ENST00000581194 ncrna:miRNA chromosome:GRCh37:21:31747612:31747696:-1 gene:ENSG00000265007 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581194 ncrna:miRNA chromosome:GRCh37:21:31747612:31747696:-1 gene:ENSG00000265007 gene_biotype:miRNA transcript_biotype:miRNA	chr21	 31747612	 31747696	-	ENSG00000265007	ENST00000581194	NA	NA	KRTAP13-2	NA	chr21:31743709-31744557	inter
CUST_14507_PI429285431	1.6797132	A	1.5755488	A	1.07487165115239	0	lncRNA	16172-2_{3001..4970}	lnc-CLLU1.1-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLLU1.1-9:1	chr12	 91076412	 91078381	+	lnc-CLLU1.1-9	lnc-CLLU1.1-9:1	XLOC_009831	linc-CLLU1-4	NA	NA	NA	inter
CUST_23155_PI429285431	0.9094428	A	0.90470207	A	1.00329142852754	0	lncRNA	24726-1_{1..483}	lnc-CALB2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALB2-3:1	chr16	 71147708	 71148190	+	lnc-CALB2-3	lnc-CALB2-3:1	ENSG00000259798.1	RP11-23E19.2	HYDIN	NA	chr16:71137708-71157903	inner
CUST_40060_PI429285431	6.308643	P	6.1801376	P	1.09316062432835	0	lncRNA	40910-1_{1..2622}	n407265|NR_026734|lncRNA|Homosapiens||RefGeneNoncode|NR_026734||4.0536800|-0.2273264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407265|NR_026734|lncRNA|Homosapiens||RefGeneNoncode|NR_026734||4.0536800|-0.2273264	chr3	111758464	111761085	+	NA	NA	NA	NA	C3orf52	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90chr3:111805182-111810116"	NA	inter
CUST_15375_PI429285431	3.198008	P	3.0575876	A	1.1022262567956	0	lncRNA	17058-1_{1..330}	lnc-AC092295.7.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092295.7.1-1:3	chr19	 37026000	 37026329	+	lnc-AC092295.7.1-1	lnc-AC092295.7.1-1:3	XLOC_013056	linc-ZNF382-1	ZNF529	NA	chr19:37034517-37036137	inter
CUST_1433_PI429285431	0.9256446	A	0.9133443	A	1.00856236742004	0	lncRNA	1422-1_{1..450}	"transcript_id ""ENST00000479039.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000479039.1"" | genecode_v17"	chr3	108855689	108856138	+	ENSG00000241224.2	ENST00000479039.1	RP11-59E19.1	RP11-59E19.1-003	NA	NA	NA	inter
CUST_10083_PI429285431	3.3546438	P	3.8846114	P	0.692570287602618	0	lncRNA	11610-1_{1..278}	lnc-CLVS1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLVS1-2:1	chr8	 62722250	 62722527	+	lnc-CLVS1-2	lnc-CLVS1-2:1	XLOC_006818	linc-NKAIN3-2	NA	NA	NA	inter
CUST_41998_PI429285431	0.91949105	A	0.9145824	A	1.0034082116985	0	lncRNA	43833-1_{1..77}	ENST00000579680 ncrna:miRNA chromosome:GRCh37:1:180407449:180407525:-1 gene:ENSG00000265435 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579680 ncrna:miRNA chromosome:GRCh37:1:180407449:180407525:-1 gene:ENSG00000265435 gene_biotype:miRNA transcript_biotype:miRNA	chr1	180407449	180407525	-	ENSG00000265435	ENST00000579680	NA	NA	ACBD6	NA	chr1:180397449-180417525	inner
CUST_25652_PI429285431	12.99397	P	12.397242	P	1.512282850595	0	lncRNA	27182-1_{1..647}	lnc-HYI-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HYI-2:4	chr1	 44170024	 44170670	-	lnc-HYI-2	lnc-HYI-2:4	ENSG00000236200.1	RP11-184I16.2	ST3GAL3	NA	chr1:44173218-44180417	inter
CUST_11780_PI429285431	1.005729	A	1.50031	A	0.70976778508193	0	lncRNA	13359-1_{1..391}	lnc-APOL6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APOL6-1:1	chr22	 36084895	 36085285	+	lnc-APOL6-1	lnc-APOL6-1:1	XLOC_014220	linc-APOL5	NA	NA	NA	inter
CUST_34307_PI429285431	6.057837	P	5.4946446	P	1.47753509676667	0	lncRNA	35802-1_{1..1173}	n341167|CR601575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3633|NULL|-0.6401800|-0.2671997	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341167|CR601575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3633|NULL|-0.6401800|-0.2671997	chr11	134020574	134021746	-	NA	NA	NA	NA	NCAPD3	NA	chr11:134022337-134031747	inner
CUST_21470_PI429285431	0.972276	A	0.95847076	A	1.0096149930531	0	lncRNA	23089-1_{1..643}	lnc-PURG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PURG-1:1	chr8	 31034611	 31035253	-	lnc-PURG-1	lnc-PURG-1:1	ENSG00000253961.1	RP11-363L24.3	WRN	NA	chr8:31024611-31031277	inter
CUST_42414_PI429285431	3.7547152	P	4.083071	P	0.796443651722247	0	lncRNA	45125-1_{1..135}	ENST00000364773 ncrna:snoRNA chromosome:GRCh37:7:75573100:75573234:1 gene:ENSG00000201643 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364773 ncrna:snoRNA chromosome:GRCh37:7:75573100:75573234:1 gene:ENSG00000201643 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 75573100	 75573234	+	ENSG00000201643	ENST00000364773	NA	NA	POR	NA	chr7:75563100-75583234	inner
CUST_28573_PI429285431	1.441413	A	2.3716667	A	0.524766052831296	0	lncRNA	30253-1_{1..370}	n325932|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049095|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049095|-1.3005600|-0.1960390	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325932|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049095|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049095|-1.3005600|-0.1960390	chr10	 82399532	 82399901	+	NA	NA	NA	NA	SH2D4B	"hg19_refFlat_USP33:range=chr1:78177420-782111475'pad=0,hg19_refFlat_USP33:range=chr1:78177420-782111475'pad=0 3'pad=0 strand=- repeatMasking=none,-61.60;hg19_refFlat_USP33:range=chr1:78163002-782111475'pad=0,hg19_refFlat_USP33:range=chr1:78163002-782111475'pad=0 3'pad=0 strand=- repeatMasking=none,-61.60chr10:82389532-82406316"	NA	inner
CUST_31386_PI429285431	1.0179868	A	1.0103729	A	1.00529150413384	0	lncRNA	33164-1_{1..1812}	n337852|CR601260|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|235|NULL|-0.8961800|-0.2708907	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337852|CR601260|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|235|NULL|-0.8961800|-0.2708907	chrX	131503381	131505192	-	NA	NA	NA	NA	MBNL3	NA	chrX:131503342-131515193	inner
CUST_301_PI429201921	1.8616717	A	1.8489618	A	1.0088487521256	0	lncRNA	207-3_{6001..7157}	TC16001780.hg.1	TCONS_00024264-XLOC_011882 // Rinn lincRNAs // linc-CPPED1-4 chr16:-:14456965-14464123 // chr16 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr16:-:14456965-14464123	NA	Affy_HUMAN_HTA2.0	TCONS_00024264-XLOC_011882	linc-CPPED1-4	chr16	 14456965	 14464123	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51988_PI429285431	2.6201973	A	2.6835146	A	0.957060943273113	0	lncRNA	55523-2_{3001..3619}	hg19_lincRNAsTranscripts_TCONS_l2_00017151 range=chr21:16206963-16254319 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017151 range=chr21:16206963-16254319 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 16209963	 16210581	-	NA	NA	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20"	NA	inter
CUST_13126_PI429285431	2.992773	A	2.8618386	A	1.09500267939146	0	lncRNA	14754-1_{1..477}	lnc-ROBO2-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ROBO2-4:4	chr3	 80838388	 80838864	+	lnc-ROBO2-4	lnc-ROBO2-4:4	XLOC_002716	linc-CADM2-8	NA	NA	NA	inter
LNCA_21_P0014240	4.13409	P	4.5792623	P	0.734496591016998	0	lncRNA	XR_108990	XR_108990	XR_108990	NA	NA	LOC100288449	uncharacterized LOC100288449	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100288449 (LOC100288449), miscRNA [XR_108990]"	chr9:113801480-113801539	hs|9q31.3	Agilent_HUMAN_G3V2	XR_108990	XR_108990	chr9	113801480	113801539	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14658_PI429285431	0.92721754	A	0.9182316	A	1.00624801690966	0	lncRNA	16327-1_{1..2705}	lnc-FAM84B-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM84B-8:2	chr8	128239644	128242348	-	lnc-FAM84B-8	lnc-FAM84B-8:2	XLOC_007215	linc-FAM84B-9	NA	NA	NA	inter
LNCA_21_P0009838	1.0474828	A	1.005548	A	1.0294935562784	0	lncRNA	ENST00000432834	NA	NA	NA	NA	XLOC_013498	NA	ENST00000432834	NA	NA	"BROAD Institute lincRNA (XLOC_013498), lincRNA [TCONS_00027916]"	chr20:24661500-24661559	hs|20p11.21	Agilent_HUMAN_G3V2	ENST00000432834	ENST00000432834	chr20	 24661500	 24661559	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50558_PI429285431	8.914326	P	9.159904	P	0.843477798265995	0	lncRNA	54250-1_{1..569}	hg19_lincRNAsTranscripts_TCONS_l2_00030929 range=chrY:10035732-10036602 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030929 range=chrY:10035732-10036602 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrY	 10035732	 10036300	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11296_PI429285431	3.4418066	P	3.4352345	P	1.00456582434203	0	lncRNA	12859-1_{1..346}	lnc-AC013480.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC013480.1.1-3:1	chr2	 42252286	 42252631	-	lnc-AC013480.1.1-3	lnc-AC013480.1.1-3:1	XLOC_002059	linc-SLC8A1-4	NA	NA	NA	inter
CUST_27600_PI429285431	1.1816463	A	1.6667886	A	0.714426599039165	0	lncRNA	29179-1_{1..2632}	n324803|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194139|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194139|0.0710239|-0.3611588	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324803|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194139|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194139|0.0710239|-0.3611588	chr21	 35039923	 35042554	+	NA	NA	NA	NA	ITSN1	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-27.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40chr21:35029923-35089053"	NA	inner
CUST_35744_PI429285431	12.838589	P	11.944346	P	1.85863438078325	0	lncRNA	37164-1_{1..1616}	n342920|AK074526|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5428|NULL|-0.7357090|-0.2668499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342920|AK074526|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5428|NULL|-0.7357090|-0.2668499	chr6	114178523	114180138	+	NA	NA	NA	NA	MARCKS	NA	chr6:114178527-114184652	inner
CUST_40116_PI429285431	5.55407	P	6.2159963	P	0.632033835816853	0	lncRNA	40960-1_{1..394}	n407615|NR_027081|lncRNA|Homosapiens||RefGeneNoncode|NR_027081||-0.9848910|-0.2848502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407615|NR_027081|lncRNA|Homosapiens||RefGeneNoncode|NR_027081||-0.9848910|-0.2848502	chr16	 30125432	 30125825	+	NA	NA	NA	NA	MAPK3	NA	chr16:30125426-30134630	inner
CUST_43848_PI429285431	0.917924	A	1.0065389	A	0.940425197627348	0	lncRNA	48571-1_{1..465}	"gi|310118931|ref|XR_109939.1| PREDICTED: Homo sapiens uncharacterized LOC100506891 (LOC100506891), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118931|ref|XR_109939.1| PREDICTED: Homo sapiens uncharacterized LOC100506891 (LOC100506891), misc_RNA"	NA	NA	NA	NA	NA	XR_109939.1	NA	NA	NA	NA	NA	Unknown
CUST_27780_PI429285431	8.366186	P	8.383513	P	0.98806167292106	0	lncRNA	29366-1_{1..3000}	n325001|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000315979|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000315979|1.0713700|-0.1907653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325001|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000315979|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000315979|1.0713700|-0.1907653	chr20	 33564809	 33567808	+	NA	NA	NA	NA	MYH7B	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60chr20:33554809-33578774"	NA	inner
CUST_4836_PI429285431	0.9364873	A	0.9100898	A	1.01846577491542	0	lncRNA	4779-1_{1..2226}	"transcript_id ""ENST00000557246.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557246.1"" | genecode_v17"	chr14	 56981049	 56983274	+	ENSG00000258803.1	ENST00000557246.1	RP11-624J12.1	RP11-624J12.1-001	NA	NA	NA	inter
CUST_5887_PI429285431	1.94879	A	2.4178908	A	0.722414722633811	0	lncRNA	5818-1_{1..395}	"transcript_id ""ENST00000518420.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518420.1"" | genecode_v17"	chr17	 47991767	 47992161	+	ENSG00000254039.1	ENST00000518420.1	RP11-304F15.6	RP11-304F15.6-001	DLX4	NA	chr17:48016486-48020282	inter
CUST_27924_PI429285431	3.1826973	P	3.2046216	P	0.984918121416395	0	lncRNA	29525-1_{1..1093}	n325168|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000109027|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000109027|-0.6081010|-0.3177814	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325168|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000109027|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000109027|-0.6081010|-0.3177814	chr2	114051428	114052520	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7067_PI429285431	2.2936616	A	2.5107875	A	0.860277553296457	0	lncRNA	7012-1_{1..2173}	"transcript_id ""ENST00000399711.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000399711.1"" | genecode_v17"	chrX	 68399400	 68401572	+	ENSG00000215162.1	ENST00000399711.1	LINC00269	LINC00269-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70"	NA	inter
CUST_1497_PI429285431	0.9178287	A	1.5132897	A	0.661832938745462	0	lncRNA	1484-1_{1..449}	"transcript_id ""ENST00000474598.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000474598.1"" | genecode_v17"	chr3	150618941	150619389	-	ENSG00000244382.1	ENST00000474598.1	RP11-373I8.1	RP11-373I8.1-001	NA	NA	NA	inter
CUST_33994_PI429285431	4.696393	P	4.505719	P	1.14129678373972	0	lncRNA	35531-1_{1..2189}	n340807|AK094724|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3270|NULL|-1.3153100|-0.3906517	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340807|AK094724|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3270|NULL|-1.3153100|-0.3906517	chr17	 65691177	 65693365	+	NA	NA	NA	NA	PITPNC1	NA	chr17:65681177-65689647	inner
CUST_11852_PI429285431	8.168523	P	8.245363	P	0.948132110513912	0	lncRNA	13429-1_{1..204}	lnc-C14orf79-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C14orf79-1:1	chr14	105543887	105544090	+	lnc-C14orf79-1	lnc-C14orf79-1:1	XLOC_010951	linc-BTBD6-2	NA	NA	NA	inter
CUST_27418_PI429285431	0.9090433	A	1.5315852	A	0.649525512929952	0	lncRNA	28983-1_{1..386}	n324588|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039915|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039915|-1.0310300|-0.2434069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324588|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039915|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039915|-1.0310300|-0.2434069	chr6	 14113129	 14113514	+	NA	NA	NA	NA	CD83	NA	chr6:14117865-14125111	inter
CUST_42425_PI429285431	9.633292	P	9.762769	P	0.914162788783093	0	lncRNA	45142-1_{1..104}	ENST00000364139 ncrna:snoRNA chromosome:GRCh37:7:132437783:132437886:1 gene:ENSG00000201009 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364139 ncrna:snoRNA chromosome:GRCh37:7:132437783:132437886:1 gene:ENSG00000201009 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	132437783	132437886	+	ENSG00000201009	ENST00000364139	NA	NA	NA	NA	NA	inter
CUST_11102_PI429285431	1.0290378	A	1.3284078	A	0.812607170401262	0	lncRNA	12658-1_{1..3000}	lnc-SCIMP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SCIMP-1:1	chr17	  5144295	  5147294	-	lnc-SCIMP-1	lnc-SCIMP-1:1	XLOC_012366	linc-C17orf87	C17orf87	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr17:5134295-5138083"	NA	inter
CUST_6036_PI429285431	0.91160476	A	1.0849416	A	0.886789233698635	0	lncRNA	5962-1_{1..456}	"transcript_id ""ENST00000583497.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583497.1"" | genecode_v17"	chr18	  1159142	  1159597	+	ENSG00000263551.1	ENST00000583497.1	RP11-78F17.1	RP11-78F17.1-005	NA	NA	NA	inter
CUST_49252_PI429285431	6.7154512	P	7.0336375	P	0.802077584723508	0	lncRNA	53070-1_{1..1502}	hg19_lincRNAsTranscripts_TCONS_l2_00022897 range=chr5:53072051-53115485 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022897 range=chr5:53072051-53115485 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 53072051	 53073552	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44554_PI429285431	5.7938457	P	4.4477277	P	2.54227130595406	0	lncRNA	49138-1_{1..2223}	"gi|376319210|ref|NR_046348.1| Homo sapiens peptidylprolyl isomerase domain and WD repeat containing 1 (PPWD1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|376319210|ref|NR_046348.1| Homo sapiens peptidylprolyl isomerase domain and WD repeat containing 1 (PPWD1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_046348.1	NA	NA	NA	NA	NA	Unknown
CUST_49848_PI429285431	0.9015384	A	0.9052921	A	0.997401515349422	0	lncRNA	53602-5_{12001..15000}	hg19_lincRNAsTranscripts_TCONS_l2_00026657 range=chr7:65982683-66057999 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026657 range=chr7:65982683-66057999 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 65994683	 65997682	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-59.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_GTF2IRD1:range=chr7:73922411-740167605'pad=0,hg19_refFlat_GTF2IRD1:range=chr7:73922411-740167605'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.01;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.90;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_6811_PI429285431	0.92468274	A	1.0050007	A	0.945849165144105	0	lncRNA	6759-1_{1..680}	"transcript_id ""ENST00000441465.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441465.1"" | genecode_v17"	chr21	 25261114	 25261793	-	ENSG00000231986.1	ENST00000441465.1	AP000474.1	AP000474.1-001	NA	NA	NA	inter
CUST_49287_PI429285431	6.23245	P	6.8580933	P	0.648130710373974	0	lncRNA	53106-1_{1..1456}	hg19_lincRNAsTranscripts_TCONS_l2_00022749 range=chr5:1600498-1634114 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022749 range=chr5:1600498-1634114 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	  1600498	  1601953	-	NA	NA	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40"	NA	inter
LNCA_33_P3412335	0.988982	A	1.3819535	A	0.761559414076713	0	lncRNA	XR_132574	XR_132574	XR_132574	100128356	Hs.564156	LOC100128356	protein transactivated by hepatitis B virus E antigen	NA	NP864444	NA	"PREDICTED: Homo sapiens protein transactivated by hepatitis B virus E antigen (LOC100128356), miscRNA [XR_132574]"	chr10:4482305-4482246	hs|10p15.1	Agilent_HUMAN_G3V2	XR_132574	XR_132574	chr10	  4482246	  4482305	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44680_PI429285431	0.91913223	A	1.3090345	A	0.763181301602875	0	lncRNA	49240-1_{1..2308}	"gi|300797090|ref|NR_034143.1| Homo sapiens uncharacterized LOC729177 (LOC729177), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300797090|ref|NR_034143.1| Homo sapiens uncharacterized LOC729177 (LOC729177), non-coding RNA"	Chr6	 22134831	 22137138	-	729177	NR_034143.1	NA	NA	NA	NA	NA	inter
CUST_6062_PI429285431	1.5460144	A	1.2635721	A	1.21625210338188	0	lncRNA	5988-1_{1..3000}	"transcript_id ""ENST00000582008.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000582008.1"" | genecode_v17"	chr18	  5238099	  5241098	+	ENSG00000263753.1	ENST00000582008.1	LINC00667	LINC00667-001	NA	"hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10"	NA	inter
CUST_8894_PI429285431	1.4800855	A	1.507031	A	0.981496140663062	0	lncRNA	10430-1_{1..3000}	lnc-CNOT7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CNOT7-1:1	chr8	 17031689	 17034688	-	lnc-CNOT7-1	lnc-CNOT7-1:1	ENSG00000250168	ENST00000512360	ZDHHC2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00chr8:17021689-17044318"	NA	inner
CUST_10612_PI429285431	3.00362	A	3.2375267	P	0.85032914960954	0	lncRNA	12142-1_{1..1753}	lnc-ADCY2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADCY2-1:1	chr5	  7391404	  7393156	+	lnc-ADCY2-1	lnc-ADCY2-1:1	XLOC_004280	linc-ADCY2-1	ADCY2	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50chr5:7396343-7401998"	NA	inter
CUST_45002_PI429285431	0.9139322	A	0.9117404	A	1.00152039462007	0	lncRNA	49507-3_{6001..6613}	"gi|262205173|ref|NR_030672.1| Homo sapiens KIAA1324-like (KIAA1324L), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|262205173|ref|NR_030672.1| Homo sapiens KIAA1324-like (KIAA1324L), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_030672.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009300	2.2285655	A	1.6330986	A	1.51096149954743	0	lncRNA	TCONS_00025572	NA	NA	NA	NA	XLOC_012397	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012397), lincRNA [TCONS_00025572]"	chr17:15179253-15179194	hs|17p12	Agilent_HUMAN_G3V2	TCONS_00025572	TCONS_00025572	chr17	 15179194	 15179253	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005484	0.98258585	A	1.2343574	A	0.839864474512347	0	lncRNA	TCONS_00013749	NA	NA	NA	NA	XLOC_006389	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006389), lincRNA [TCONS_00013749]"	chr7:26638562-26638503	hs|7p15.2	Agilent_HUMAN_G3V2	TCONS_00013749	TCONS_00013749	chr7	 26638503	 26638562	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16318_PI429285431	0.9304858	A	1.539593	A	0.655602290522039	0	lncRNA	18024-1_{1..540}	lnc-TTLL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTLL2-1:1	chr6	167804760	167805299	+	lnc-TTLL2-1	lnc-TTLL2-1:1	XLOC_005541	linc-MLLT4-2	TCP10	NA	chr6:167794760-167797998	inter
CUST_27727_PI429285431	1.2725053	A	1.8633659	A	0.66394672975675	0	lncRNA	29309-1_{1..381}	n324942|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079761|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079761|-0.9363990|-0.3234439	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324942|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079761|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079761|-0.9363990|-0.3234439	chr20	 51658299	 51658679	+	NA	NA	NA	NA	TSHZ2	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60chr20:51648299-51694536"	NA	inner
CUST_10718_PI429285431	4.768598	P	5.2606173	P	0.711029193265917	0	lncRNA	12254-1_{1..1489}	lnc-HEATR2-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HEATR2-3:3	chr7	   563717	   565205	+	lnc-HEATR2-3	lnc-HEATR2-3:3	XLOC_005958	linc-HEATR2-2	PDGFA	NA	chr7:553717-559481	inter
CUST_20409_PI429285431	5.24422	P	5.333078	P	0.940266745495285	0	lncRNA	22051-1_{1..434}	lnc-ZNF485-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-ZNF485-1:1	chr10	 44140298	 44140731	+	lnc-ZNF485-1	lnc-ZNF485-1:1	ENSG00000226245.1	ZNF32-AS1	ZNF32	"hg19_refFlat_ZNF32:range=chr10:44139498-441415815'pad=0,hg19_refFlat_ZNF32:range=chr10:44139498-441415815'pad=0 3'pad=0 strand=- repeatMasking=none,-92.80chr10:44139307-44144326"	NA	inter
CUST_39550_PI429285431	13.306828	P	12.988599	P	1.24679908386587	0	lncRNA	40495-1_{1..1981}	n387479|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011fbi.1||-0.6874080|-0.1823964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387479|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011fbi.1||-0.6874080|-0.1823964	chr6	  2536689	  2538669	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13465_PI429285431	2.838336	A	3.4756353	P	0.642915349335013	0	lncRNA	15103-1_{1..2025}	lnc-C9orf50-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf50-5:1	chr9	132175300	132177324	-	lnc-C9orf50-5	lnc-C9orf50-5:1	XLOC_007866	linc-IER5L-5	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10"	NA	inter
CUST_35687_PI429285431	3.360935	P	3.3276196	P	1.02336117108865	0	lncRNA	37107-1_{1..1688}	n342848|AL389956|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5351|NULL|-0.1171270|-0.2840024	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342848|AL389956|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5351|NULL|-0.1171270|-0.2840024	chr8	124536039	124537726	-	NA	NA	NA	NA	FBXO32	"hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00chr8:124526039-124547708"	NA	inner
CUST_35379_PI429285431	8.194512	P	7.8736334	P	1.24909101263579	0	lncRNA	36787-1_{1..1694}	n342427|CR601542|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4920|NULL|1.0220900|-0.2185200	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n342427|CR601542|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4920|NULL|1.0220900|-0.2185200	chr2	 91807794	 91809487	-	NA	NA	NA	NA	LOC100506191	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-18.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50chr2:91832852-91835376"	NA	inter
CUST_28476_PI429285431	1.6406403	A	1.6631098	A	0.984545987393295	0	lncRNA	30143-1_{1..584}	n325818|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141935|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141935|-0.2332860|-0.2100747	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325818|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141935|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141935|-0.2332860|-0.2100747	chr11	130628526	130629109	+	NA	NA	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80"	NA	inter
CUST_38959_PI429285431	5.9168453	P	4.8031445	P	2.16400045124408	0	lncRNA	39944-1_{1..1572}	n385139|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003thg.2||2.7635400|-0.3648003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385139|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003thg.2||2.7635400|-0.3648003	chr7	 39893287	 39894858	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42635_PI429285431	6.032056	P	6.5262856	P	0.709940685639569	0	lncRNA	45509-1_{1..116}	ENST00000516728 ncrna:snoRNA chromosome:GRCh37:10:16047807:16047922:1 gene:ENSG00000252537 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516728 ncrna:snoRNA chromosome:GRCh37:10:16047807:16047922:1 gene:ENSG00000252537 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	 16047807	 16047922	+	ENSG00000252537	ENST00000516728	NA	NA	NA	NA	NA	inter
CUST_46227_PI429285431	8.483405	P	8.692942	P	0.864814729298845	0	lncRNA	50467-1_{1..2481}	"gi|388890257|ref|NR_051965.1| Homo sapiens mitochondrial ribosomal protein S31 pseudogene 3 (MRPS31P3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388890257|ref|NR_051965.1| Homo sapiens mitochondrial ribosomal protein S31 pseudogene 3 (MRPS31P3), transcript variant 4, non-coding RNA"	Chr13	 52741844	 52744324	-	100887750	NR_051965.1	NA	NA	NA	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30"	NA	inter
CUST_43531_PI429285431	13.119625	P	13.28806	P	0.889807398942508	0	lncRNA	48315-1_{1..1988}	"gi|219802466|ref|NR_024438.2| Homo sapiens actin, gamma 1 pseudogene 4 (ACTG1P4), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219802466|ref|NR_024438.2| Homo sapiens actin, gamma 1 pseudogene 4 (ACTG1P4), non-coding RNA"	Chr1	104112026	104114013	+	648740	NR_024438.2	NA	NA	NA	NA	NA	inter
CUST_12153_PI429285431	2.9412644	A	2.7494864	A	1.14217047764665	0	lncRNA	13753-1_{1..834}	lnc-CD46-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD46-1:1	chr1	208134666	208135499	+	lnc-CD46-1	lnc-CD46-1:1	XLOC_000542	linc-LOC642587-7	NA	NA	NA	inter
CUST_35452_PI429285431	1.8834925	A	2.2466254	A	0.777474412215897	0	lncRNA	36858-1_{1..3000}	n342528|BX648813|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5024|NULL|0.3531140|-0.2538413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342528|BX648813|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5024|NULL|0.3531140|-0.2538413	chr3	123424798	123427797	+	NA	NA	NA	NA	MYLK	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MYLK:range=chr3:123332952-1235126885'pad=0,hg19_refFlat_MYLK:range=chr3:123332952-1235126885'pad=0 3'pad=0 strand=- repeatMasking=none,-95.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00chr3:123414798-123444293"	NA	inner
CUST_25745_PI429285431	1.0786331	A	1.0097415	A	1.04891051246291	0	lncRNA	27271-1_{1..450}	lnc-PCDH10-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PCDH10-7:1	chr4	132449215	132449664	+	lnc-PCDH10-7	lnc-PCDH10-7:1	ENSG00000250102.1	RP11-314N14.1	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60"	NA	inter
LNCA_21_P0012204	9.285003	P	9.336632	P	0.964846270239286	0	lncRNA	TCONS_l2_00017237	NA	NA	NA	NA	XLOC_l2_009219	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009219), lincRNA [TCONS_l2_00017237]"	chr21:40360460-40360401	hs|21q22.2	Agilent_HUMAN_G3V2	TCONS_l2_00017237	TCONS_l2_00017237	chr21	 40360401	 40360460	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4569_PI429285431	1.0740743	A	1.5608637	A	0.713611415964309	0	lncRNA	4518-1_{1..575}	"transcript_id ""ENST00000481738.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000481738.1"" | genecode_v17"	chr13	 30512043	 30512617	+	ENSG00000122043.6	ENST00000481738.1	LINC00544	LINC00544-002	NA	NA	NA	inter
CUST_12093_PI429285431	0.99451685	A	0.926551	A	1.04823766241448	0	lncRNA	13687-1_{1..428}	lnc-C9orf104-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C9orf104-1:1	chr9	137436766	137437193	-	lnc-C9orf104-1	lnc-C9orf104-1:1	XLOC_007886	linc-BRD3-2	NA	NA	NA	inter
CUST_46281_PI429285431	7.376144	P	7.4887686	P	0.924903913695097	0	lncRNA	50518-1_{1..2566}	"gi|340007411|ref|NR_040448.1| Homo sapiens solute carrier family 7 (amino acid transporter light chain, y+L system), member 7 (SLC7A7), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|340007411|ref|NR_040448.1| Homo sapiens solute carrier family 7 (amino acid transporter light chain, y+L system), member 7 (SLC7A7), transcript variant 1, non-coding RNA"	Chr14	 23242431	 23244996	-	9056	NR_040448.1	NA	NA	NA	NA	NA	inter
CUST_2410_PI429285431	0.90955067	A	0.9126117	A	0.997880504994258	0	lncRNA	2402-1_{1..691}	"transcript_id ""ENST00000522704.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522704.1"" | genecode_v17"	chr5	157912198	157912888	+	ENSG00000254135.1	ENST00000522704.1	RP11-32D16.1	RP11-32D16.1-002	NA	NA	NA	inter
CUST_34969_PI429285431	1.2970543	A	1.2328048	A	1.04554090064588	0	lncRNA	36386-1_{1..589}	n341891|AY545526|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4371|NULL|-1.2860200|-0.5040786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341891|AY545526|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4371|NULL|-1.2860200|-0.5040786	chr12	 42819998	 42820586	-	NA	NA	NA	NA	PPHLN1	NA	chr12:42809998-42830587	inner
CUST_50929_PI429285431	9.982354	P	10.228288	P	0.843269687028104	0	lncRNA	54570-1_{1..2207}	hg19_lincRNAsTranscripts_TCONS_l2_00006194 range=chr12:31958675-31961607 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006194 range=chr12:31958675-31961607 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 31958675	 31960881	-	NA	NA	NA	NA	NA	"hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00"	NA	inter
LNCA_21_P0001556	0.9270304	A	1.9896722	A	0.478754582076962	0	lncRNA	THC2764105	NA	NA	NA	NA	XLOC_000939	NA	NA	THC2764105	NA	"BROAD Institute lincRNA (XLOC_000939), lincRNA [TCONS_00001608]"	chr1:100728922-100728863	hs|1p21.2	Agilent_HUMAN_G3V2	THC2764105	THC2764105	chr1	100728863	100728922	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40026_PI429285431	5.680695	P	5.747116	P	0.955004211197755	0	lncRNA	40884-1_{1..1776}	n407189|NR_026650|lncRNA|Homosapiens||RefGeneNoncode|NR_026650||5.5999300|-0.3264254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407189|NR_026650|lncRNA|Homosapiens||RefGeneNoncode|NR_026650||5.5999300|-0.3264254	chr6	  3118925	  3120700	+	NA	NA	NA	NA	BPHL	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90chr6:3118926-3153432"	NA	inter
CUST_47791_PI429285431	3.9522476	P	4.083827	P	0.912831574576033	0	lncRNA	51712-1_{1..1576}	"gi|32563543|ref|NR_001541.1| Homo sapiens testis-specific transcript, Y-linked 5 (non-protein coding) (TTTY5), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|32563543|ref|NR_001541.1| Homo sapiens testis-specific transcript, Y-linked 5 (non-protein coding) (TTTY5), non-coding RNA"	NA	NA	NA	NA	NA	NR_001541.1	NA	NA	NA	NA	NA	Unknown
CUST_45179_PI429285431	1.3263547	A	0.9255532	A	1.32024117691002	0	lncRNA	49651-1_{1..2396}	"gi|197304787|ref|NR_001569.2| Homo sapiens ADAM metallopeptidase domain 3A (pseudogene) (ADAM3A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|197304787|ref|NR_001569.2| Homo sapiens ADAM metallopeptidase domain 3A (pseudogene) (ADAM3A), transcript variant 2, non-coding RNA"	Chr8	 39308564	 39310959	-	1587	NR_001569.3	NA	NA	NA	NA	NA	inter
CUST_19769_PI429285431	0.9043983	A	1.0221708	A	0.921609504249929	0	lncRNA	21427-1_{1..2102}	lnc-DYNC1I2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-DYNC1I2-1:1	chr2	172630897	172632998	+	lnc-DYNC1I2-1	lnc-DYNC1I2-1:1	ENSG00000228389.1	AC068039.4	SLC25A12	NA	chr2:172639915-172642354	inter
CUST_25747_PI429285431	3.1633573	A	3.5003617	P	0.79168345135372	0	lncRNA	27273-1_{1..694}	lnc-SDCCAG8-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SDCCAG8-3:1	chr1	243303255	243303948	+	lnc-SDCCAG8-3	lnc-SDCCAG8-3:1	ENSG00000227230.1	RP11-261C10.5	CEP170	"hg19_refFlat_CEP170:range=chr1:243289751-2433885825'pad=0,hg19_refFlat_CEP170:range=chr1:243289751-2433885825'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80chr1:243293255-243313890"	NA	inner
CUST_39739_PI429285431	3.8761692	P	3.4863806	P	1.3102014042584	0	lncRNA	40664-1_{1..236}	n405755|NR_002985|lncRNA|Homosapiens||RefGeneNoncode|NR_002985||-1.0492300|-0.3498407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n405755|NR_002985|lncRNA|Homosapiens||RefGeneNoncode|NR_002985||-1.0492300|-0.3498407	chr3	131197841	131198076	-	NA	NA	NA	NA	MRPL3	NA	chr3:131187841-131208077	inner
CUST_22649_PI429285431	0.9058996	A	0.89764625	A	1.00573718122961	0	lncRNA	24234-1_{1..624}	lnc-BARHL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BARHL1-1:1	chr9	135336381	135337004	+	lnc-BARHL1-1	lnc-BARHL1-1:1	ENSG00000227771.1	RP11-738I14.4	C9orf171	NA	chr9:135326381-135346859	inner
CUST_5102_PI429285431	1.4170587	A	1.4115747	A	1.0038084529345	0	lncRNA	5042-1_{1..579}	"transcript_id ""ENST00000566676.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566676.1"" | genecode_v17"	chr15	 24506426	 24507004	+	ENSG00000261621.1	ENST00000566676.1	RP11-580I1.2	RP11-580I1.2-002	NA	NA	NA	inter
CUST_949_PI429285431	5.732239	P	4.7221236	P	2.01407219766321	0	lncRNA	939-1_{1..560}	"transcript_id ""ENST00000409898.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000409898.2"" | genecode_v17"	chr2	 87754995	 87755554	+	ENSG00000222041.6	ENST00000409898.2	LINC00152	LINC00152-001	NA	NA	NA	inter
CUST_37134_PI429285431	0.9227499	A	0.91727835	A	1.00379979042374	0	lncRNA	38257-1_{1..410}	n345575|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1124|NULL|-1.5182000|-0.2161001	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345575|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1124|NULL|-1.5182000|-0.2161001	chr2	235780047	235780456	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35047_PI429285431	1.6264275	A	0.9201324	A	1.63160869440683	0	lncRNA	36457-1_{1..1166}	n341994|BC043545|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4475|NULL|-0.6374750|-0.3123721	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341994|BC043545|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4475|NULL|-0.6374750|-0.3123721	chr12	 99487136	 99488301	+	NA	NA	NA	NA	ANKS1B	NA	chr12:99477136-99508789	inner
LNCA_21_P0009369	0.9241861	A	0.91054195	A	1.00950226666609	0	lncRNA	TCONS_00025782	NA	NA	NA	NA	XLOC_012588	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012588), lincRNA [TCONS_00025782]"	chr17:79760422-79760363	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_00025782	TCONS_00025782	chr17	 79760363	 79760422	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25110_PI429285431	0.9125849	A	0.9034492	A	1.00635247663299	0	lncRNA	26648-1_{1..1178}	lnc-RP11-90J19.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-90J19.1.1-1:1	chr15	 47688548	 47689725	-	lnc-RP11-90J19.1.1-1	lnc-RP11-90J19.1.1-1:1	ENSG00000259221.1	CTD-2050N2.1	SEMA6D	"hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0,hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10chr15:47678548-47698929"	NA	inner
CUST_26378_PI429285431	5.26735	P	5.5799513	P	0.805188627018528	0	lncRNA	27885-1_{1..1390}	lnc-SPATC1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPATC1-1:2	chr8	145105696	145107085	+	lnc-SPATC1-1	lnc-SPATC1-1:2	ENSG00000204791.4	CTD-3065J16.6	SPATC1	"hg19_refFlat_OPLAH:range=chr8:145106227-1451149355'pad=0,hg19_refFlat_OPLAH:range=chr8:145106227-1451149355'pad=0 3'pad=0 strand=- repeatMasking=none,-103.50chr8:145095696-145102015"	NA	inner
CUST_38104_PI429285431	5.226642	P	5.3809805	P	0.898544276144438	0	lncRNA	39179-1_{1..3000}	n381149|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001dgv.2||4.7458800|-0.3206452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381149|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001dgv.2||4.7458800|-0.3206452	chr1	 76103851	 76106850	-	NA	NA	NA	NA	ACADM	NA	chr1:76107023-76198721	inter
CUST_25128_PI429285431	0.9194004	A	0.9082121	A	1.00778528757371	0	lncRNA	26666-1_{1..994}	lnc-PVALB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PVALB-1:1	chr22	 37266135	 37267128	-	lnc-PVALB-1	lnc-PVALB-1:1	ENSG00000183822.2	CTA-833B7.2	NCF4	NA	chr22:37257030-37274059	inner
CUST_51081_PI429285431	1.2177094	A	0.91280746	A	1.23533466856039	0	lncRNA	54718-2_{3001..3065}	hg19_lincRNAsTranscripts_TCONS_l2_00007204 range=chr13:52741849-52810431 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007204 range=chr13:52741849-52810431 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 52744849	 52744913	-	NA	NA	NA	NA	NEK3	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70chr13:52731849-52733996"	NA	inter
CUST_44366_PI429285431	0.9017213	A	0.9012455	A	1.00032985381832	0	lncRNA	48985-1_{1..838}	"gi|397139062|ref|XR_158783.1| PREDICTED: Homo sapiens uncharacterized LOC100996632 (LOC100996632), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139062|ref|XR_158783.1| PREDICTED: Homo sapiens uncharacterized LOC100996632 (LOC100996632), misc_RNA"	NA	NA	NA	NA	NA	XR_158783.1	NA	NA	NA	NA	NA	Unknown
CUST_3862_PI429285431	0.9172235	A	0.8939053	A	1.01629427156411	0	lncRNA	3831-1_{1..516}	"transcript_id ""ENST00000530492.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530492.1"" | genecode_v17"	chr11	 13848390	 13848905	-	ENSG00000254927.1	ENST00000530492.1	RP11-98J9.2	RP11-98J9.2-001	NA	NA	NA	inter
CUST_32947_PI429285431	2.9183874	A	3.2294831	P	0.806029362418587	0	lncRNA	34567-2_{3001..5225}	n339621|BX537540|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2065|NULL|1.3600800|-0.2417265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339621|BX537540|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2065|NULL|1.3600800|-0.2417265	chr3	141027909	141030133	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00"	NA	inter
LNCA_21_P0014344	4.2484426	P	4.022259	P	1.16973651738095	0	lncRNA	XR_109374	XR_109374	XR_109374	NA	NA	LOC100507263	uncharacterized LOC100507263	NA	THC2527306	NA	"PREDICTED: Homo sapiens hypothetical LOC100507263, transcript variant 1 (LOC100507263), miscRNA [XR_109374]"	chr17:20833079-20833138	hs|17p11.2	Agilent_HUMAN_G3V2	XR_109374	XR_109374	chr17	 20833079	 20833138	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21746_PI429285431	1.5816896	A	2.5532815	A	0.509943070410847	0	lncRNA	23356-1_{1..491}	lnc-RP3-486B10.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP3-486B10.1.1-1:1	chr6	 16762583	 16763073	+	lnc-RP3-486B10.1.1-1	lnc-RP3-486B10.1.1-1:1	ENSG00000229931.1	RP1-151F17.1	ATXN1	NA	chr6:16752583-16761721	inter
CUST_48490_PI429285431	0.9105007	A	0.91104925	A	0.999619846390805	0	lncRNA	52343-1_{1..530}	hg19_lincRNAsTranscripts_TCONS_l2_00000924 range=chr1:241577066-241596930 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000924 range=chr1:241577066-241596930 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	241577066	241577595	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12188_PI429285431	0.9135127	A	0.905515	A	1.00555897729634	0	lncRNA	13788-1_{1..224}	lnc-EBF3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EBF3-3:1	chr10	132001249	132001472	-	lnc-EBF3-3	lnc-EBF3-3:1	XLOC_008995	linc-EBF3-2	NA	NA	NA	inter
CUST_2484_PI429285431	0.91402847	A	0.9071985	A	1.00474539835766	0	lncRNA	2476-1_{1..489}	"transcript_id ""ENST00000456440.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456440.1"" | genecode_v17"	chr6	 14391462	 14391950	-	ENSG00000237346.1	ENST00000456440.1	RP3-448I9.2	RP3-448I9.2-001	NA	NA	NA	inter
LNCA_21_P0012431	0.92612416	A	0.9163971	A	1.00676506458081	0	lncRNA	ENST00000445675	NA	NA	NA	NA	XLOC_l2_010097	NA	ENST00000445675	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010097), lincRNA [TCONS_l2_00020063]"	chr3:6673650-6673591	hs|3p26.1	Agilent_HUMAN_G3V2	ENST00000445675	ENST00000445675	chr3	  6673591	  6673650	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45351_PI429285431	2.970261	A	3.840899	P	0.546904940520611	0	lncRNA	49788-1_{1..483}	"gi|341915468|ref|XR_132873.1| PREDICTED: Homo sapiens family with sequence similarity 27, member D1 (FAM27D1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915468|ref|XR_132873.1| PREDICTED: Homo sapiens family with sequence similarity 27, member D1 (FAM27D1), misc_RNA"	NA	NA	NA	NA	NA	XR_132873.1	NA	NA	NA	NA	NA	Unknown
CUST_42285_PI429285431	7.706635	P	7.657188	P	1.03486817208318	0	lncRNA	44899-1_{1..132}	ENST00000364359 ncrna:snoRNA chromosome:GRCh37:3:183169645:183169776:1 gene:ENSG00000201229 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364359 ncrna:snoRNA chromosome:GRCh37:3:183169645:183169776:1 gene:ENSG00000201229 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	183169645	183169776	+	ENSG00000201229	ENST00000364359	NA	NA	NA	NA	NA	inter
CUST_16226_PI429285431	0.92798626	A	1.0014638	A	0.950344479907876	0	lncRNA	17933-1_{1..2290}	lnc-HIVEP2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-HIVEP2-5:2	chr6	142958850	142961139	-	lnc-HIVEP2-5	lnc-HIVEP2-5:2	XLOC_005862	linc-NMBR-1	NA	NA	NA	inter
CUST_50673_PI429285431	1.9066749	A	1.9204588	A	0.990491225616772	0	lncRNA	54347-1_{1..204}	hg19_lincRNAsTranscripts_TCONS_l2_00003035 range=chr10:45642843-45643414 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003035 range=chr10:45642843-45643414 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 45642843	 45643046	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8204_PI429285431	0.9092362	A	0.9010003	A	1.00572501649127	0	lncRNA	9799-1_{1..3000}	lnc-CTDSP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CTDSP2-1:2	chr12	 58287523	 58290522	-	lnc-CTDSP2-1	lnc-CTDSP2-1:2	ENSG00000245651	ENST00000499481	NA	NA	NA	inter
CUST_14297_PI429285431	0.92077994	A	0.91537774	A	1.00375153917149	0	lncRNA	15956-1_{1..569}	lnc-OBFC2A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OBFC2A-2:2	chr2	192502050	192502618	+	lnc-OBFC2A-2	lnc-OBFC2A-2:2	XLOC_001787	linc-OBFC2A	NA	NA	NA	inter
CUST_14965_PI429285431	1.7426116	A	2.343364	A	0.659409967611818	0	lncRNA	16628-1_{1..336}	lnc-GUCY1A2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GUCY1A2-2:1	chr11	106474900	106475235	-	lnc-GUCY1A2-2	lnc-GUCY1A2-2:1	XLOC_009543	linc-KBTBD3	NA	NA	NA	inter
CUST_50728_PI429285431	0.91880864	A	0.9136961	A	1.00355002916631	0	lncRNA	54396-1_{1..295}	hg19_lincRNAsTranscripts_TCONS_l2_00003766 range=chr10:114070756-114072113 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003766 range=chr10:114070756-114072113 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	114070756	114071050	-	NA	NA	NA	NA	TECTB	NA	chr10:114060756-114063070	inter
CUST_36236_PI429285431	3.229187	P	3.1097074	P	1.08634293296352	0	lncRNA	37485-1_{1..1939}	n344777|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_326|NULL|-1.3335900|-0.1720439	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344777|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_326|NULL|-1.3335900|-0.1720439	chr1	 38586872	 38588810	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013591	2.7643793	A	3.3889914	P	0.648594142552469	0	lncRNA	XR_108989	XR_108989	XR_108989	NA	Hs.54957	LOC100507540	uncharacterized LOC100507540	NA	THC2548824	NA	"PREDICTED: Homo sapiens hypothetical LOC100507540 (LOC100507540), miscRNA [XR_108989]"	chr9:74920524-74929943	hs|9q21.13	Agilent_HUMAN_G3V2	XR_108989	XR_108989	chr9	 74920524	 74929943	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4771_PI429285431	0.9071499	A	0.91326773	A	0.995768421848848	0	lncRNA	4717-1_{1..879}	"transcript_id ""ENST00000556542.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556542.1"" | genecode_v17"	chr14	 36683813	 36684691	+	ENSG00000258844.1	ENST00000556542.1	RP11-259K15.2	RP11-259K15.2-001	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10"	NA	inter
CUST_40091_PI429285431	0.8957949	A	0.92257476	A	0.981608835549606	0	lncRNA	40937-2_{3001..3934}	n407447|NR_026904|lncRNA|Homosapiens||RefGeneNoncode|NR_026904||7.7807800|-0.3205880	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407447|NR_026904|lncRNA|Homosapiens||RefGeneNoncode|NR_026904||7.7807800|-0.3205880	chr2	147347624	147348557	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.12;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70"	NA	inter
LNCA_21_P0012593	0.9620676	A	0.9296973	A	1.02269099347773	0	lncRNA	TCONS_l2_00020586	NA	NA	NA	NA	XLOC_l2_010723	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010723), lincRNA [TCONS_l2_00020586]"	chr4:79610673-79610732	hs|4q21.21	Agilent_HUMAN_G3V2	TCONS_l2_00020586	TCONS_l2_00020586	chr4	 79610673	 79610732	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40806_PI429285431	2.9864645	P	2.9962335	A	0.993251519157706	0	lncRNA	41512-1_{1..1662}	n410567|NR_037806|lncRNA|Homosapiens||RefGeneNoncode|NR_037806||-0.8047070|-0.2381011	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410567|NR_037806|lncRNA|Homosapiens||RefGeneNoncode|NR_037806||-0.8047070|-0.2381011	chr1	 11900375	 11902036	+	NA	NA	NA	NA	CLCN6	"hg19_refFlat_NPPA:range=chr1:11906066-119077415'pad=0,hg19_refFlat_NPPA:range=chr1:11906066-119077415'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr1:11890375-11903201"	NA	inter
CUST_3563_PI429285431	0.9200359	A	0.9196992	A	1.00023340989155	0	lncRNA	3533-1_{1..462}	"transcript_id ""ENST00000417054.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417054.1"" | genecode_v17"	chr9	137828997	137829458	+	ENSG00000236403.1	ENST00000417054.1	RP11-447M12.2	RP11-447M12.2-001	NA	NA	NA	inter
CUST_43970_PI429285431	9.260062	P	8.201839	P	2.08236504545072	0	lncRNA	48673-2_{3001..4183}	"gi|388556552|ref|NR_049790.1| Homo sapiens pleckstrin homology domain containing, family B (evectins) member 2 (PLEKHB2), transcript variant 12, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388556552|ref|NR_049790.1| Homo sapiens pleckstrin homology domain containing, family B (evectins) member 2 (PLEKHB2), transcript variant 12, non-coding RNA"	Chr2	131865420	131866602	+	55041	NR_049790.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.04;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00"	NA	inter
CUST_33495_PI429285431	0.926089	A	0.92733014	A	0.999140077253983	0	lncRNA	35067-1_{1..2331}	n340234|AK130325|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2695|NULL|0.2636910|-0.3130131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340234|AK130325|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2695|NULL|0.2636910|-0.3130131	chr4	140897779	140900109	-	NA	NA	NA	NA	MAML3	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr4:140887779-140909933"	NA	inner
CUST_33152_PI429285431	0.91649216	A	0.9131497	A	1.00231950261884	0	lncRNA	34748-1_{1..761}	n339842|BC037214|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2290|NULL|-0.8539810|-0.2919369	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339842|BC037214|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2290|NULL|-0.8539810|-0.2919369	chr18	 34481907	 34482667	-	NA	NA	NA	NA	KIAA1328	NA	chr18:34471907-34513777	inner
CUST_7517_PI429285431	1.1216996	A	0.9282687	A	1.14347981567357	0	lncRNA	9157-1_{1..2105}	lnc-NQO2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NQO2-5:1	chr6	  2781635	  2783739	+	lnc-NQO2-5	lnc-NQO2-5:1	ENSG00000248974	ENST00000506356	WRNIP1	NA	chr6:2771635-2785979	inner
CUST_32395_PI429285431	4.5696387	P	4.9768524	P	0.754078331800681	0	lncRNA	34071-2_{3001..5468}	n338985|AK128708|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1413|NULL|-1.0628700|-0.4145767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338985|AK128708|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1413|NULL|-1.0628700|-0.4145767	chr2	157196083	157198550	-	NA	NA	NA	NA	NR4A2	NA	chr2:157183083-157189287	inter
CUST_12482_PI429285431	0.91006917	A	0.9049913	A	1.00352591273112	0	lncRNA	14094-1_{1..1558}	lnc-RBPJ-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RBPJ-1:1	chr4	 26105667	 26107224	+	lnc-RBPJ-1	lnc-RBPJ-1:1	XLOC_003479	linc-RBPJ	NA	NA	NA	inter
CUST_26165_PI429285431	1.5598613	A	0.9744153	A	1.5005027884895	0	lncRNA	27676-1_{1..555}	lnc-RP11-362K2.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-362K2.2.1-1:1	chr12	 59457794	 59458348	+	lnc-RP11-362K2.2.1-1	lnc-RP11-362K2.2.1-1:1	ENSG00000257443.1	RP11-150C16.1	NA	NA	NA	inter
CUST_19314_PI429285431	1.683363	A	0.99868846	A	1.60733933819933	0	lncRNA	20980-1_{1..372}	lnc-VIM-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VIM-1:5	chr10	 17455349	 17455720	+	lnc-VIM-1	lnc-VIM-1:5	ENSG00000204832.5	RP11-414K1.3	ST8SIA6	NA	chr10:17445349-17465502	inner
CUST_33727_PI429285431	1.0460887	A	0.9236271	A	1.08859068788208	0	lncRNA	35285-1_{1..580}	n340504|CR749723|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2966|NULL|-0.8755300|-0.1492063	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340504|CR749723|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2966|NULL|-0.8755300|-0.1492063	chr17	 10561858	 10562437	-	NA	NA	NA	NA	MYH3	NA	chr17:10551858-10560615	inter
CUST_43489_PI429285431	0.9251938	A	1.1058851	A	0.882280130481315	0	lncRNA	48283-1_{1..3000}	"gi|384551676|ref|NR_047584.1| Homo sapiens interleukin 12 receptor, beta 2 (IL12RB2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384551676|ref|NR_047584.1| Homo sapiens interleukin 12 receptor, beta 2 (IL12RB2), transcript variant 6, non-coding RNA"	Chr1	 67773047	 67776046	+	3595	NR_047584.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30"	NA	inter
CUST_25378_PI429285431	1.006506	A	0.9510387	A	1.03919565223949	0	lncRNA	26909-1_{1..522}	lnc-LIN7A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIN7A-2:1	chr12	 80852533	 80853054	-	lnc-LIN7A-2	lnc-LIN7A-2:1	ENSG00000257424.1	RP11-288D9.1	PTPRQ	NA	chr12:80842533-80862604	inner
LNCA_21_P0013368	1.9176328	A	2.1753721	A	0.836397526194389	0	lncRNA	ENST00000419463	NA	NA	NA	NA	XLOC_l2_013295	NA	ENST00000419463	THC2680431	NA	"BROAD Institute lincRNA (XLOC_l2_013295), lincRNA [TCONS_l2_00027059]"	chr7:17506168-17506227	hs|7p21.1	Agilent_HUMAN_G3V2	ENST00000419463	ENST00000419463	chr7	 17506168	 17506227	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48714_PI429285431	2.9082234	A	2.857381	A	1.03586959898859	0	lncRNA	52556-1_{1..1423}	hg19_lincRNAsTranscripts_TCONS_l2_00013966 range=chr2:128143756-128146971 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013966 range=chr2:128143756-128146971 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	128143756	128145178	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14644_PI429285431	0.9277867	A	0.9418802	A	0.990278690622774	0	lncRNA	16314-1_{1..685}	lnc-LHFPL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LHFPL3-1:1	chr7	104602431	104603115	+	lnc-LHFPL3-1	lnc-LHFPL3-1:1	XLOC_006195	linc-MLL5	NA	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70"	NA	inter
CUST_48480_PI429285431	4.8289113	P	4.814253	P	1.01021215102637	0	lncRNA	52333-1_{1..537}	hg19_lincRNAsTranscripts_TCONS_l2_00000871 range=chr1:226274503-226278045 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000871 range=chr1:226274503-226278045 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	226274503	226275039	+	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70"	NA	inter
CUST_30852_PI429285431	7.825538	P	8.19371	P	0.774763557122678	0	lncRNA	32640-1_{1..396}	n336841|AJ867757|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330157|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330157|2.1604100|-0.0852318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336841|AJ867757|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330157|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330157|2.1604100|-0.0852318	chr22	 24376533	 24376928	-	NA	NA	NA	NA	GSTT1	NA	chr22:24376139-24384284	inner
CUST_39036_PI429285431	1.6859196	A	0.91073185	A	1.71141275736274	0	lncRNA	40016-1_{1..2724}	n385430|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003yjz.1||0.3690670|-0.3637065	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385430|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003yjz.1||0.3690670|-0.3637065	chr8	101946567	101949290	-	NA	NA	NA	NA	YWHAZ	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90chr8:101936567-101959291"	NA	inner
CUST_6935_PI429285431	5.055696	P	5.2372885	P	0.881729173734321	0	lncRNA	6885-1_{1..3000}	"transcript_id ""ENST00000436681.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436681.1"" | genecode_v17"	chr22	 21655280	 21658279	-	ENSG00000206142.5	ENST00000436681.1	FAM230C	FAM230C-003	RIMBP3B	NA	chr22:21645280-21674170	inter
CUST_24409_PI429285431	0.9065765	A	0.90331584	A	1.00226267327609	0	lncRNA	25962-1_{1..667}	lnc-TCF20-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TCF20-1:1	chr22	 42535623	 42536289	-	lnc-TCF20-1	lnc-TCF20-1:1	ENSG00000232710.1	RP4-669P10.16	CYP2D6	NA	chr22:42525623-42526883	inter
CUST_32723_PI429285431	6.756959	P	7.2527685	P	0.709163652844431	0	lncRNA	34364-1_{1..2100}	n339352|AK090696|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1784|NULL|3.3596600|-0.1117763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339352|AK090696|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1784|NULL|3.3596600|-0.1117763	chr16	 90071280	 90073379	-	NA	NA	NA	NA	DBNDD1	NA	chr16:90071279-90085937	inner
CUST_2367_PI429285431	1.1993246	A	0.92447835	A	1.20986514535159	0	lncRNA	2360-1_{1..714}	"transcript_id ""ENST00000513329.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513329.1"" | genecode_v17"	chr5	133772402	133773115	+	ENSG00000250994.1	ENST00000513329.1	AC005355.1	AC005355.1-001	NA	NA	NA	inter
CUST_20575_PI429285431	1.016829	A	1.011575	A	1.00364843468044	0	lncRNA	22216-1_{1..1185}	lnc-PCP4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-PCP4-1:3	chr21	 41756506	 41757690	+	lnc-PCP4-1	lnc-PCP4-1:3	ENSG00000235123.1	DSCAM-AS1	DSCAM	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70chr21:41746506-41767285"	NA	inter
CUST_45807_PI429285431	2.035807	A	2.9280748	A	0.538766554797199	0	lncRNA	50146-1_{1..3000}	"gi|387849363|ref|NR_049734.1| Homo sapiens membrane-spanning 4-domains, subfamily A, member 14 (MS4A14), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387849363|ref|NR_049734.1| Homo sapiens membrane-spanning 4-domains, subfamily A, member 14 (MS4A14), transcript variant 8, non-coding RNA"	Chr11	 60163487	 60166486	+	84689	NR_049734.1	NA	NA	NA	NA	NA	inter
CUST_16788_PI429285431	3.6583433	A	3.6777632	A	0.986629343154332	0	lncRNA	18496-2_{3001..3947}	lnc-TM2D3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TM2D3-1:2	chr15	102157153	102158099	-	lnc-TM2D3-1	lnc-TM2D3-1:2	XLOC_011616	linc-PCSK6-2	NA	NA	NA	inter
CUST_6131_PI429285431	1.0038846	A	0.94522303	A	1.04149908361979	0	lncRNA	6057-1_{1..1352}	"transcript_id ""ENST00000584546.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584546.1"" | genecode_v17"	chr18	 24916343	 24917694	-	ENSG00000264151.1	ENST00000584546.1	RP11-739N10.1	RP11-739N10.1-001	NA	NA	NA	inter
CUST_10539_PI429285431	1.0579312	A	0.92577744	A	1.09592856243822	0	lncRNA	12068-1_{1..3000}	lnc-YIPF4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-YIPF4-1:1	chr2	 32538713	 32541712	+	lnc-YIPF4-1	lnc-YIPF4-1:1	XLOC_001417	linc-BIRC6	YIPF4	"hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70chr2:32528713-32531658"	NA	inter
CUST_29528_PI429285431	2.889026	A	2.2993953	A	1.50486148478363	0	lncRNA	31286-1_{1..218}	n332986|AF117822|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000070122|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000070122|0.2704000|-0.0550535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332986|AF117822|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000070122|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000070122|0.2704000|-0.0550535	chr1	204131142	204131359	-	NA	NA	NA	NA	REN	NA	chr1:204123944-204135465	inner
CUST_46375_PI429285431	0.974743	A	1.234273	A	0.835360018001317	0	lncRNA	50592-1_{1..1952}	"gi|208022648|ref|NR_024182.1| Homo sapiens long intergenic non-protein coding RNA 521 (LINC00521), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|208022648|ref|NR_024182.1| Homo sapiens long intergenic non-protein coding RNA 521 (LINC00521), transcript variant 1, non-coding RNA"	Chr14	 94463616	 94465567	+	256369	NR_024182.1	NA	NA	NA	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-61.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.21"	NA	inter
CUST_102_PI429201921	5.12882	P	5.4566646	P	0.796725911052489	0	lncRNA	105-1_{1..2975}	TC0Y000286.hg.1	TCONS_00017617-XLOC_008306 // Rinn lincRNAs // linc-SLC25A6-1 chrY:-:1465319-1467852 // chrY // 100 // 100 // 0 // --- // 0 /// TCONS_00017618-XLOC_008306 // Rinn lincRNAs // linc-SLC25A6-1 chrY:-:1465917-1468295 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:1465319-1467852	NA	Affy_HUMAN_HTA2.0	TCONS_00017617-XLOC_008306	linc-SLC25A6-1	chrY	  1465319	  1467852	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9932_PI429285431	3.131655	P	2.9941878	A	1.09997230487331	0	lncRNA	11456-1_{1..3000}	lnc-FOXL1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXL1-3:4	chr16	 86771016	 86774015	+	lnc-FOXL1-3	lnc-FOXL1-3:4	XLOC_011816	linc-MAP1LC3B-5	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20"	NA	inter
CUST_40767_PI429285431	0.9236659	A	0.9285147	A	0.996644709560895	0	lncRNA	41488-2_{3001..4899}	n410482|NR_037625_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_7||0.6418800|-0.2679819	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410482|NR_037625_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_7||0.6418800|-0.2679819	chr6	  4372432	  4374330	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20"	NA	inter
CUST_40401_PI429285431	0.90388846	A	0.9093275	A	0.996237042494887	0	lncRNA	41189-3_{6001..7582}	n409263|NR_033435|lncRNA|Homosapiens||RefGeneNoncode|NR_033435||4.3885800|-0.3689983	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409263|NR_033435|lncRNA|Homosapiens||RefGeneNoncode|NR_033435||4.3885800|-0.3689983	chr7	 11019498	 11021079	+	NA	NA	NA	NA	PHF14	NA	chr7:11013499-11157376	inter
CUST_6779_PI429285431	0.9070131	A	0.9123746	A	0.996290588319915	0	lncRNA	6726-1_{1..527}	"transcript_id ""ENST00000602280.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602280.1"" | genecode_v17"	chr21	 17909663	 17910189	+	ENSG00000215386.6	ENST00000602280.1	LINC00478	LINC00478-018	NA	NA	NA	inter
CUST_18525_PI429285431	8.07179	P	8.024785	P	1.03311796819196	0	lncRNA	20239-1_{1..645}	lnc-COX10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COX10-2:1	chr17	 13928653	 13929297	+	lnc-COX10-2	lnc-COX10-2:1	ENSG00000141028	AC005304.2	NA	NA	NA	inter
CUST_12882_PI429285431	2.4508939	A	2.6470494	A	0.872873503928108	0	lncRNA	14510-1_{1..281}	lnc-RP11-817J15.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-817J15.3.1-1:1	chr11	102548434	102548714	+	lnc-RP11-817J15.3.1-1	lnc-RP11-817J15.3.1-1:1	XLOC_009261	linc-DYNC2H1-4	NA	NA	NA	inter
CUST_47803_PI429285431	3.6731174	P	3.4496148	P	1.16756478225904	0	lncRNA	51722-3_{6001..8205}	"gi|225903387|ref|NR_027420.1| Homo sapiens ankyrin repeat domain 57 pseudogene (LOC389834), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225903387|ref|NR_027420.1| Homo sapiens ankyrin repeat domain 57 pseudogene (LOC389834), non-coding RNA"	NT_113889.1	    52845	    55049	-	389834	NR_027420.1	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00"	NA	Unknown
CUST_2362_PI429285431	6.083808	P	6.460071	P	0.770430647814334	0	lncRNA	2355-1_{1..519}	"transcript_id ""ENST00000506670.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506670.1"" | genecode_v17"	chr5	127075230	127075748	+	ENSG00000230561.3	ENST00000506670.1	CTC-228N24.1	CTC-228N24.1-002	NA	NA	NA	inter
CUST_18865_PI429285431	0.895743	A	1.4238168	A	0.693480009200312	0	lncRNA	20558-1_{1..410}	lnc-G3BP1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-G3BP1-2:2	chr5	151104126	151104535	+	lnc-G3BP1-2	lnc-G3BP1-2:2	ENSG00000249035	CTB-113P19.1	NA	NA	NA	inter
CUST_43850_PI429285431	0.90692663	A	1.1013806	A	0.873903587624184	0	lncRNA	48573-1_{1..3000}	"gi|320089541|ref|NR_037710.1| Homo sapiens family with sequence similarity 161, member A (FAM161A), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|320089541|ref|NR_037710.1| Homo sapiens family with sequence similarity 161, member A (FAM161A), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_037710.1	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	Unknown
CUST_32843_PI429285431	1.5327674	A	2.0415804	A	0.702800440154605	0	lncRNA	34477-1_{1..220}	n339499|U17637|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1939|NULL|-0.9957840|-0.0900878	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339499|U17637|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1939|NULL|-0.9957840|-0.0900878	chr21	 39187634	 39187853	+	NA	NA	NA	NA	KCNJ6	NA	chr21:39177634-39197854	inner
CUST_41576_PI429285431	4.106817	P	4.4303646	P	0.799102459541515	0	lncRNA	42896-1_{1..113}	ENST00000408098 ncrna:miRNA chromosome:GRCh37:17:79106996:79107108:-1 gene:ENSG00000221025 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408098 ncrna:miRNA chromosome:GRCh37:17:79106996:79107108:-1 gene:ENSG00000221025 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 79106996	 79107108	-	ENSG00000221025	ENST00000408098	NA	NA	AATK	NA	chr17:79096996-79117108	inner
CUST_3709_PI429285431	0.92440486	A	0.9124778	A	1.00830147574325	0	lncRNA	3677-1_{1..622}	"transcript_id ""ENST00000451946.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451946.1"" | genecode_v17"	chr10	 65796105	 65796726	-	ENSG00000226426.1	ENST00000451946.1	RP11-174J11.1	RP11-174J11.1-001	NA	NA	NA	inter
CUST_50733_PI429285431	1.1450969	A	1.4921309	A	0.786198763572486	0	lncRNA	54401-1_{1..443}	hg19_lincRNAsTranscripts_TCONS_l2_00003283 range=chr10:121380628-121381179 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003283 range=chr10:121380628-121381179 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	121380628	121381070	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013280	5.8367	P	6.057936	P	0.857830192741831	0	lncRNA	TCONS_l2_00026389	NA	NA	NA	NA	XLOC_l2_013728	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013728), lincRNA [TCONS_l2_00026389]"	NA	NA	Agilent_HUMAN_G3V2	TCONS_l2_00026389	TCONS_l2_00026389	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23317_PI429285431	0.911423	A	2.235146	A	0.39950265607797	0	lncRNA	24888-1_{1..549}	lnc-APPL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-APPL2-1:1	chr12	105720682	105721230	-	lnc-APPL2-1	lnc-APPL2-1:1	ENSG00000257642.1	RP11-474B16.1	C12orf75	NA	chr12:105724414-105730795	inter
CUST_26334_PI429285431	5.2441463	P	5.1176467	P	1.09164184317252	0	lncRNA	27841-1_{1..814}	lnc-UBE2N-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBE2N-1:2	chr12	 93771213	 93772026	-	lnc-UBE2N-1	lnc-UBE2N-1:2	ENSG00000257252.1	RP11-486A14.2	NUDT4	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10chr12:93771701-93781492"	NA	inter
CUST_19842_PI429285431	5.228844	P	5.161554	P	1.04774671631142	0	lncRNA	21499-1_{1..262}	lnc-TMED5-1:25	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMED5-1:25	chr1	 93790192	 93790453	-	lnc-TMED5-1	lnc-TMED5-1:25	ENSG00000223745.1	RP4-717I23.3	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0,hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10"	NA	inter
LNCA_21_P0001753	2.3249476	A	4.34985	P	0.245721772438158	0	lncRNA	TCONS_00002573	NA	NA	NA	NA	XLOC_001181	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001181), lincRNA [TCONS_00002573]"	chr1:207979555-207979496	hs|1q32.2	Agilent_HUMAN_G3V2	TCONS_00002573	TCONS_00002573	chr1	207979496	207979555	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42910_PI429285431	0.90863365	A	1.0850834	A	0.884877867145451	0	lncRNA	46008-1_{1..82}	ENST00000363768 ncrna:snoRNA chromosome:GRCh37:15:25483133:25483214:1 gene:ENSG00000200638 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363768 ncrna:snoRNA chromosome:GRCh37:15:25483133:25483214:1 gene:ENSG00000200638 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 25483133	 25483214	+	ENSG00000200638	ENST00000363768	NA	NA	SNRPN	NA	chr15:25473133-25493214	inter
CUST_25994_PI429285431	0.9461711	A	0.9481343	A	0.998640138905307	0	lncRNA	27513-1_{1..497}	lnc-CNBD1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CNBD1-4:1	chr8	 89554909	 89555405	+	lnc-CNBD1-4	lnc-CNBD1-4:1	ENSG00000253553.1	RP11-586K2.1	NA	"hg19_refFlat_MMP16:range=chr8:89053689-893394355'pad=0,hg19_refFlat_MMP16:range=chr8:89053689-893394355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90"	NA	inter
CUST_273_PI429201921	0.948158	A	1.1059973	A	0.896366539158854	0	lncRNA	196-2_{3001..6000}	TC20001162.hg.1	TCONS_l2_00016200-XLOC_l2_008587 // Broad TUCP // linc-TMEM90B-4 chr20:+:23969935-23976596 // chr20 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr20:+:23969935-23976596	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00016200-XLOC_l2_008587	linc-TMEM90B-4	chr20	 23969935	 23976596	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12704_PI429285431	4.5727687	P	4.519481	P	1.03762683786426	0	lncRNA	14321-1_{1..430}	lnc-MGMT-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MGMT-6:2	chr10	130714461	130714890	+	lnc-MGMT-6	lnc-MGMT-6:2	XLOC_008663	linc-MGMT-3	NA	NA	NA	inter
CUST_41317_PI429285431	4.9781017	P	5.435174	P	0.728463049442764	0	lncRNA	42350-1_{1..66}	ENST00000580577 ncrna:miRNA chromosome:GRCh37:4:86643621:86643686:1 gene:ENSG00000266421 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580577 ncrna:miRNA chromosome:GRCh37:4:86643621:86643686:1 gene:ENSG00000266421 gene_biotype:miRNA transcript_biotype:miRNA	chr4	 86643621	 86643686	+	ENSG00000266421	ENST00000580577	NA	NA	ARHGAP24	NA	chr4:86633621-86653686	inner
CUST_37646_PI429285431	5.7183013	P	5.8245473	P	0.929002252662859	0	lncRNA	38738-2_{3001..5586}	n346123|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1673|NULL|-1.2830700|-0.2611334	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n346123|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1673|NULL|-1.2830700|-0.2611334	chr9	138357459	138360044	-	NA	NA	NA	NA	KIAA0649	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80chr9:138371648-138374246"	NA	inter
CUST_20958_PI429285431	0.9554752	A	0.9553128	A	1.00011257343804	0	lncRNA	22589-1_{1..461}	lnc-TOX3-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TOX3-1:7	chr16	 52587976	 52588436	-	lnc-TOX3-1	lnc-TOX3-1:7	ENSG00000249231.3	RP11-297L17.1	TOX3	NA	chr16:52577976-52581714	inter
CUST_41116_PI429285431	3.0699306	P	1.924738	A	2.21175655675753	0	lncRNA	41871-1_{1..80}	ENST00000583102 ncrna:miRNA chromosome:GRCh37:22:18246946:18247025:-1 gene:ENSG00000264757 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583102 ncrna:miRNA chromosome:GRCh37:22:18246946:18247025:-1 gene:ENSG00000264757 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 18246946	 18247025	-	ENSG00000264757	ENST00000583102	NA	NA	BID	NA	chr22:18236946-18257025	inner
CUST_206_PI429285431	4.4044075	P	4.256106	P	1.10826393295647	0	lncRNA	196-1_{1..2257}	"transcript_id ""ENST00000453837.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453837.1"" | genecode_v17"	chr1	 32307620	 32309876	-	ENSG00000203620.2	ENST00000453837.1	RP11-84A19.2	RP11-84A19.2-001	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20"	NA	inter
CUST_16237_PI429285431	0.90826994	A	0.9036387	A	1.00321528893665	0	lncRNA	17944-1_{1..310}	lnc-GPR65-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR65-1:11	chr14	 88510959	 88511268	+	lnc-GPR65-1	lnc-GPR65-1:11	XLOC_010897	linc-SPATA7-3	NA	NA	NA	inter
CUST_48531_PI429285431	1.3094479	A	1.4151617	A	0.929345018243362	0	lncRNA	52381-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00013835 range=chr2:98284581-98319937 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013835 range=chr2:98284581-98319937 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 98284581	 98287580	+	NA	NA	NA	NA	ACTR1B	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10chr2:98274581-98280561"	NA	inter
CUST_12060_PI429285431	3.6105356	P	3.6546597	P	0.969878478228485	0	lncRNA	13647-1_{1..341}	lnc-DYSF-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DYSF-3:1	chr2	 72005066	 72005406	+	lnc-DYSF-3	lnc-DYSF-3:1	XLOC_001526	linc-SPR-1	NA	NA	NA	inter
CUST_1364_PI429285431	6.307637	P	6.514818	P	0.866228172908079	0	lncRNA	1352-1_{1..767}	"transcript_id ""ENST00000497573.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000497573.1"" | genecode_v17"	chr3	 63091651	 63092417	+	ENSG00000244342.1	ENST00000497573.1	LINC00698	LINC00698-005	NA	NA	NA	inter
CUST_44116_PI429285431	1.0961027	A	1.420866	A	0.79842937227152	0	lncRNA	48782-1_{1..1725}	"gi|201860220|ref|NR_004431.2| Homo sapiens ghrelin opposite strand/antisense RNA (GHRLOS), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|201860220|ref|NR_004431.2| Homo sapiens ghrelin opposite strand/antisense RNA (GHRLOS), transcript variant 1, non-coding RNA"	Chr3	 10322636	 10324360	+	100126793	NR_004431.3	NA	NA	NA	"hg19_refFlat_GHRL:range=chr3:10327559-103345975'pad=0,hg19_refFlat_GHRL:range=chr3:10327559-103345975'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20"	NA	inter
CUST_43019_PI429285431	5.4254646	P	5.5275946	P	0.931656474764659	0	lncRNA	46297-1_{1..163}	ENST00000411175 ncrna:snRNA chromosome:GRCh37:10:62672523:62672685:-1 gene:ENSG00000223107 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000411175 ncrna:snRNA chromosome:GRCh37:10:62672523:62672685:-1 gene:ENSG00000223107 gene_biotype:snRNA transcript_biotype:snRNA	chr10	 62672523	 62672685	-	ENSG00000223107	ENST00000411175	NA	NA	RHOBTB1	NA	chr10:62662523-62682685	inter
CUST_42882_PI429285431	10.4700575	P	10.640371	P	0.888649555177325	0	lncRNA	45965-1_{1..95}	ENST00000384335 ncrna:snoRNA chromosome:GRCh37:15:25296624:25296718:1 gene:ENSG00000207063 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384335 ncrna:snoRNA chromosome:GRCh37:15:25296624:25296718:1 gene:ENSG00000207063 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 25296624	 25296718	+	ENSG00000207063	ENST00000384335	NA	NA	SNRPN	NA	chr15:25286624-25306718	inter
CUST_40397_PI429285431	8.400713	P	8.345379	P	1.03909963861422	0	lncRNA	41187-1_{1..2210}	n409255|NR_033422|lncRNA|Homosapiens||RefGeneNoncode|NR_033422||7.2272400|-0.2281193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409255|NR_033422|lncRNA|Homosapiens||RefGeneNoncode|NR_033422||7.2272400|-0.2281193	chr12	 51373565	 51375774	-	NA	NA	NA	NA	SLC11A2	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40chr12:51373566-51422058"	NA	inner
CUST_48338_PI429285431	2.6289313	A	1.7361867	A	1.85670498342445	0	lncRNA	52193-1_{1..2022}	hg19_lincRNAsTranscripts_TCONS_l2_00000272 range=chr1:48549625-48607894 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000272 range=chr1:48549625-48607894 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 48549625	 48551646	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	inter
CUST_39299_PI429285431	6.9407835	P	7.036699	P	0.935678299781006	0	lncRNA	40268-1_{1..1975}	n386308|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gsg.1||8.2087100|-0.1580791	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386308|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gsg.1||8.2087100|-0.1580791	chr22	 20383730	 20385704	-	NA	NA	NA	NA	TMEM191B	NA	chr22:20373730-20380440	inter
LNCA_21_P0001677	3.0834575	P	3.5700316	P	0.713717919416746	0	lncRNA	TCONS_00002017	NA	NA	NA	NA	XLOC_000167	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000167), lincRNA [TCONS_00002017]"	chr1:45672648-45683527	hs|1p34.1	Agilent_HUMAN_G3V2	TCONS_00002017	TCONS_00002017	chr1	 45672648	 45683527	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36079_PI429285431	2.5134025	A	2.231537	A	1.2157659341134	0	lncRNA	37384-1_{1..1650}	n344668|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_217|NULL|-1.3510700|-0.2669835	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344668|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_217|NULL|-1.3510700|-0.2669835	chr14	 23767525	 23769174	-	NA	NA	NA	NA	BCL2L2-PABPN1	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-14.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.10chr14:23775971-23780466"	NA	inter
CUST_23706_PI429285431	0.9304997	A	0.9101679	A	1.01419270333081	0	lncRNA	25271-1_{1..305}	lnc-CYB561-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYB561-5:2	chr17	 61274983	 61275287	-	lnc-CYB561-5	lnc-CYB561-5:2	ENSG00000233635.2	AC037445.1	TANC2	"hg19_refFlat_TANC2:range=chr17:61086921-614993165'pad=0,hg19_refFlat_TANC2:range=chr17:61086921-614993165'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60chr17:61264983-61285146"	NA	inner
CUST_47353_PI429285431	1.3967011	A	0.89634	A	1.41456757789109	0	lncRNA	51404-1_{1..730}	"gi|312284077|ref|NR_037585.1| Homo sapiens chromosome 21 open reading frame 37 (C21orf37), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|312284077|ref|NR_037585.1| Homo sapiens chromosome 21 open reading frame 37 (C21orf37), transcript variant 1, non-coding RNA"	Chr21	 18811208	 18811937	+	100505929	NR_037585.1	NA	NA	NA	NA	NA	inter
CUST_2095_PI429285431	1.1031252	A	0.9151125	A	1.13919340546243	0	lncRNA	2086-1_{1..416}	"transcript_id ""ENST00000507730.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507730.1"" | genecode_v17"	chr5	 17404255	 17404670	+	ENSG00000248455.1	ENST00000507730.1	RP11-321E2.3	RP11-321E2.3-002	NA	NA	NA	inter
CUST_14050_PI429285431	7.0047584	P	7.0830207	P	0.947197842530216	0	lncRNA	15696-1_{1..378}	lnc-THADA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THADA-1:1	chr2	 43370001	 43370378	-	lnc-THADA-1	lnc-THADA-1:1	XLOC_002070	linc-HAAO-6	NA	NA	NA	inter
CUST_48963_PI429285431	3.4798665	P	3.7035742	P	0.856361771792745	0	lncRNA	52802-1_{1..447}	hg19_lincRNAsTranscripts_TCONS_l2_00019667 range=chr3:193307771-193310869 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019667 range=chr3:193307771-193310869 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	193307771	193308217	-	NA	NA	NA	NA	OPA1	NA	chr3:193297771-193320869	inter
CUST_41054_PI429285431	0.93378985	A	0.9009517	A	1.02302269460425	0	lncRNA	41715-1_{1..770}	n411725|NR_045005|lncRNA|Homosapiens||RefGeneNoncode|NR_045005||4.1078400|-0.1785757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411725|NR_045005|lncRNA|Homosapiens||RefGeneNoncode|NR_045005||4.1078400|-0.1785757	chr11	 59516284	 59517053	+	NA	NA	NA	NA	STX3	NA	chr11:59516285-59527054	inter
CUST_43651_PI429285431	4.2191477	P	4.150029	P	1.04907563836976	0	lncRNA	48408-1_{1..803}	"gi|299758433|ref|NR_033824.1| Homo sapiens retinoid X receptor, gamma (RXRG), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299758433|ref|NR_033824.1| Homo sapiens retinoid X receptor, gamma (RXRG), transcript variant 2, non-coding RNA"	Chr1	165406165	165406967	-	6258	NR_033824.1	NA	NA	NA	NA	NA	inter
CUST_21917_PI429285431	3.041367	A	2.6703737	A	1.29324292594203	0	lncRNA	23526-1_{1..547}	lnc-C2orf42-3:19	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:19	chr2	 70313256	 70313802	-	lnc-C2orf42-3	lnc-C2orf42-3:19	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_3306_PI429285431	0.8988728	A	0.89528155	A	1.0024923656042	0	lncRNA	3285-1_{1..367}	"transcript_id ""ENST00000521815.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521815.1"" | genecode_v17"	chr8	128197880	128198246	-	ENSG00000254166.1	ENST00000521815.1	RP11-255B23.4	RP11-255B23.4-001	NA	NA	NA	inter
LNCA_21_P0009386	5.3407693	P	5.367772	P	0.981457227057124	0	lncRNA	TCONS_00025888	NA	NA	NA	NA	XLOC_012162	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012162), lincRNA [TCONS_00025888]"	chr17:29070139-29070198	hs|17q11.2	Agilent_HUMAN_G3V2	TCONS_00025888	TCONS_00025888	chr17	 29070139	 29070198	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21585_PI429285431	5.2859206	P	5.2807283	P	1.00360551238397	0	lncRNA	23199-1_{1..283}	lnc-OBSCN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OBSCN-1:1	chr1	228597298	228597580	+	lnc-OBSCN-1	lnc-OBSCN-1:1	ENSG00000231563.1	RP11-245P10.4	TRIM11	"hg19_refFlat_TRIM17:range=chr1:228595902-2286027735'pad=0,hg19_refFlat_TRIM17:range=chr1:228595902-2286027735'pad=0 3'pad=0 strand=- repeatMasking=none,-97.10chr1:228587298-228594517"	NA	inner
CUST_9118_PI429285431	6.9862747	P	7.215097	P	0.853331198366316	0	lncRNA	10637-1_{1..1136}	lnc-UXS1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UXS1-3:1	chr2	106510079	106511214	-	lnc-UXS1-3	lnc-UXS1-3:1	ENSG00000245580	ENST00000501731	NCK2	"hg19_refFlat_NCK2:range=chr2:106471520-1065096325'pad=0,hg19_refFlat_NCK2:range=chr2:106471520-1065096325'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60chr2:106500079-106510730"	NA	inner
CUST_27732_PI429285431	1.8756634	A	1.975918	A	0.932868348813794	0	lncRNA	29314-1_{1..465}	n324948|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079752|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079752|-1.2187600|-0.3431418	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324948|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079752|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079752|-1.2187600|-0.3431418	chr20	 50724356	 50724820	+	NA	NA	NA	NA	ZFP64	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ERP29:range=chr12:112451270-1124604565'pad=0,hg19_refFlat_ERP29:range=chr12:112451270-1124604565'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20chr20:50714356-50741524"	NA	inner
CUST_43372_PI429285431	4.5508957	P	5.6986074	P	0.451340548056948	0	lncRNA	48188-1_{1..564}	"gi|397138837|ref|XR_158741.1| PREDICTED: Homo sapiens uncharacterized LOC100996587 (LOC100996587), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138837|ref|XR_158741.1| PREDICTED: Homo sapiens uncharacterized LOC100996587 (LOC100996587), misc_RNA"	NA	NA	NA	NA	NA	XR_158741.1	NA	NA	NA	NA	NA	Unknown
CUST_27442_PI429285431	9.137724	P	8.957292	P	1.13322316636742	0	lncRNA	29010-1_{1..335}	n324616|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039668|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039668|-0.3959770|-0.1666400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324616|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039668|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039668|-0.3959770|-0.1666400	chr6	  2996333	  2996667	-	NA	NA	NA	NA	NQO2	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40chr6:3000067-3008986"	NA	inter
CUST_25563_PI429285431	0.92057955	A	0.9215178	A	0.999349866086535	0	lncRNA	27092-1_{1..413}	lnc-RP11-650K20.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-650K20.3.1-1:1	chr12	104215642	104216054	+	lnc-RP11-650K20.3.1-1	lnc-RP11-650K20.3.1-1:1	ENSG00000257754.1	RP11-650K20.2	NT5DC3	NA	chr12:104205642-104225863	inner
CUST_33689_PI429285431	0.89925134	A	1.4105668	A	0.701582438083236	0	lncRNA	35250-1_{1..941}	n340462|BC069379|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2923|NULL|7.1888200|-0.0832053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340462|BC069379|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2923|NULL|7.1888200|-0.0832053	chr17	  3029904	  3030844	-	NA	NA	NA	NA	OR1G1	NA	chr17:3019904-3030845	inner
CUST_29319_PI429285431	1.8583993	A	1.8820493	A	0.983740702062229	0	lncRNA	31070-1_{1..223}	n332509|DQ925669|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468675|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468675|0.8342290|-0.1368908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332509|DQ925669|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468675|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468675|0.8342290|-0.1368908	chr12	  1009763	  1009985	+	NA	NA	NA	NA	RAD52	NA	chr12:1021255-1027122	inner
CUST_33433_PI429285431	0.9224513	A	1.3885922	A	0.723898383608655	0	lncRNA	35011-1_{1..709}	n340163|AF095853|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2623|NULL|-0.3349620|-0.3543400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340163|AF095853|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2623|NULL|-0.3349620|-0.3543400	chr10	121166905	121167613	-	NA	NA	NA	NA	GRK5	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80chr10:121156905-121177562"	NA	inner
CUST_14594_PI429285431	0.92196834	A	1.3915776	A	0.722160161372733	0	lncRNA	16261-1_{1..323}	lnc-TMEM14E-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM14E-2:1	chr3	152879435	152879757	-	lnc-TMEM14E-2	lnc-TMEM14E-2:1	XLOC_003291	linc-TMEM14E-4	RAP2B	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00chr3:152869435-152886265"	NA	inter
CUST_3065_PI429285431	4.130039	P	4.122843	P	1.00500034732833	0	lncRNA	3044-1_{1..430}	"transcript_id ""ENST00000518178.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518178.1"" | genecode_v17"	chr8	 34086812	 34087241	-	ENSG00000254033.1	ENST00000518178.1	RP11-431M3.2	RP11-431M3.2-001	NA	NA	NA	inter
CUST_41321_PI429285431	8.416264	P	8.257151	P	1.11660041699023	0	lncRNA	42362-1_{1..94}	ENST00000362153 ncrna:miRNA chromosome:GRCh37:7:1062569:1062662:-1 gene:ENSG00000199023 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362153 ncrna:miRNA chromosome:GRCh37:7:1062569:1062662:-1 gene:ENSG00000199023 gene_biotype:miRNA transcript_biotype:miRNA	chr7	  1062569	  1062662	-	ENSG00000199023	ENST00000362153	NA	NA	C7orf50	NA	chr7:1052569-1072662	inner
CUST_321_PI429285431	0.9137046	A	0.9056836	A	1.0055752175361	0	lncRNA	312-1_{1..893}	"transcript_id ""ENST00000418366.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000418366.2"" | genecode_v17"	chr1	 95145136	 95146028	-	ENSG00000224081.3	ENST00000418366.2	RP11-86H7.1	RP11-86H7.1-002	SLC44A3	NA	chr1:95285901-95295775	inter
CUST_39954_PI429285431	0.8962079	A	0.9752137	A	0.946709825215436	0	lncRNA	40827-1_{1..525}	n406993|NR_024491|lncRNA|Homosapiens||RefGeneNoncode|NR_024491||0.2604130|-0.1251745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406993|NR_024491|lncRNA|Homosapiens||RefGeneNoncode|NR_024491||0.2604130|-0.1251745	chr19	  7537722	  7538246	-	NA	NA	NA	NA	ARHGEF18	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80chr19:7527722-7537371"	NA	inter
CUST_10907_PI429285431	0.89558995	A	1.1573534	A	0.834067789676304	0	lncRNA	12451-1_{1..888}	lnc-CHD9-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD9-5:2	chr16	 52307614	 52308501	+	lnc-CHD9-5	lnc-CHD9-5:2	XLOC_011724	linc-CHD9-4	NA	NA	NA	inter
CUST_50026_PI429285431	4.812466	P	4.594434	P	1.16314584066205	0	lncRNA	53764-1_{1..446}	hg19_lincRNAsTranscripts_TCONS_l2_00027627 range=chr8:12219956-12250816 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027627 range=chr8:12219956-12250816 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 12219956	 12220401	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36433_PI429285431	0.92193997	A	1.1365229	A	0.861795260866767	0	lncRNA	37647-1_{1..1510}	n344946|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_495|NULL|-1.3279300|-0.2917357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344946|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_495|NULL|-1.3279300|-0.2917357	chr7	 21032499	 21034008	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10"	NA	inter
CUST_46025_PI429285431	3.288377	P	2.6916924	A	1.51223735789789	0	lncRNA	50307-1_{1..3000}	"gi|390131989|ref|NR_051992.1| Homo sapiens SUMO1/sentrin specific peptidase 1 (SENP1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|390131989|ref|NR_051992.1| Homo sapiens SUMO1/sentrin specific peptidase 1 (SENP1), transcript variant 4, non-coding RNA"	Chr12	 48436681	 48439680	-	29843	NR_051992.1	NA	NA	NA	NA	NA	inter
CUST_26301_PI429285431	0.9033688	A	1.601687	A	0.616290219119429	0	lncRNA	27807-1_{1..478}	lnc-CHMP4C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHMP4C-2:1	chr8	 82727575	 82728052	+	lnc-CHMP4C-2	lnc-CHMP4C-2:1	ENSG00000253334.1	RP13-923O23.6	SNX16	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_SNX16:range=chr8:82713732-827522215'pad=0,hg19_refFlat_SNX16:range=chr8:82713732-827522215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60chr8:82717575-82737949"	NA	inner
CUST_21962_PI429285431	5.834277	P	4.5072546	P	2.50884336228813	0	lncRNA	23570-1_{1..948}	lnc-PPIAL4G-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PPIAL4G-5:1	chr1	143274727	143275674	-	lnc-PPIAL4G-5	lnc-PPIAL4G-5:1	ENSG00000225278.1	BX571672.5	NA	NA	NA	inter
CUST_21881_PI429285431	0.9023654	A	0.97274405	A	0.952388001312102	0	lncRNA	23490-1_{1..669}	lnc-NBPF11-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-NBPF11-1:6	chr1	146130440	146131108	-	lnc-NBPF11-1	lnc-NBPF11-1:6	ENSG00000227733.2	RP4-565E6.1	NA	NA	NA	inter
CUST_46560_PI429285431	0.89119476	A	0.8872558	A	1.00273400962452	0	lncRNA	50745-1_{1..3000}	"gi|254939593|ref|NR_028139.1| Homo sapiens uncharacterized LOC388182 (FLJ42289), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|254939593|ref|NR_028139.1| Homo sapiens uncharacterized LOC388182 (FLJ42289), transcript variant 1, non-coding RNA"	Chr15	100884662	100887661	-	388182	NR_028139.1	NA	NA	NA	NA	NA	inter
CUST_25627_PI429285431	2.9294105	A	1.4489799	A	2.79032003294782	0	lncRNA	27157-1_{1..575}	lnc-SPPL3.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPPL3.1-3:2	chr12	121137054	121137628	-	lnc-SPPL3.1-3	lnc-SPPL3.1-3:2	ENSG00000256364.1	RP11-173P15.3	MLEC	NA	chr12:121127054-121139667	inner
CUST_3575_PI429285431	1.1114872	A	0.91549456	A	1.14551205406265	0	lncRNA	3545-1_{1..2097}	"transcript_id ""ENST00000413603.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000413603.1"" | genecode_v17"	chr10	  2047667	  2049763	-	ENSG00000234962.1	ENST00000413603.1	LINC00700	LINC00700-003	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40"	NA	inter
CUST_12473_PI429285431	1.7642226	A	1.774653	A	0.99279626979891	0	lncRNA	14085-1_{1..435}	lnc-SETD6-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SETD6-4:1	chr16	 60856409	 60856843	+	lnc-SETD6-4	lnc-SETD6-4:1	XLOC_011744	linc-CDH5-11	NA	NA	NA	inter
CUST_46479_PI429285431	5.8411145	P	4.5702834	P	2.41300532619665	0	lncRNA	50675-2_{3001..5759}	"gi|375493567|ref|NR_046341.1| Homo sapiens ubiquitin specific peptidase 3 (USP3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375493567|ref|NR_046341.1| Homo sapiens ubiquitin specific peptidase 3 (USP3), transcript variant 3, non-coding RNA"	Chr15	 63799710	 63802468	+	9960	NR_046341.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_47277_PI429285431	1.852057	A	3.0152628	A	0.446519225804037	0	lncRNA	51347-1_{1..997}	"gi|310123988|ref|XR_109601.1| PREDICTED: Homo sapiens uncharacterized LOC100128988 (LOC100128988), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123988|ref|XR_109601.1| PREDICTED: Homo sapiens uncharacterized LOC100128988 (LOC100128988), misc_RNA"	NA	NA	NA	NA	NA	XR_109601.1	NA	NA	NA	NA	NA	Unknown
CUST_39678_PI429285431	3.1579897	P	3.2737958	P	0.922866518721895	0	lncRNA	40618-2_{3001..3153}	n405307|NR_001443|lncRNA|Homosapiens||RefGeneNoncode|NR_001443||1.3863700|-0.1426455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405307|NR_001443|lncRNA|Homosapiens||RefGeneNoncode|NR_001443||1.3863700|-0.1426455	chr17	 18328494	 18328646	+	NA	NA	NA	NA	LGALS9C	NA	chr17:18330120-18338647	inter
CUST_13486_PI429285431	3.2817655	A	2.3292675	A	1.93522055749748	0	lncRNA	15124-1_{1..276}	lnc-FAM19A5-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM19A5-6:1	chr22	 48411317	 48411592	+	lnc-FAM19A5-6	lnc-FAM19A5-6:1	XLOC_014276	linc-FAM19A5-4	NA	NA	NA	inter
CUST_50842_PI429285431	0.907028	A	3.7428505	P	0.140065883527534	0	lncRNA	54487-1_{1..1061}	hg19_lincRNAsTranscripts_TCONS_l2_00004590 range=chr11:66176955-66184448 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004590 range=chr11:66176955-66184448 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 66176955	 66178015	+	NA	NA	NA	NA	NPAS4	NA	chr11:66188475-66194177	inter
CUST_50801_PI429285431	2.6335216	A	2.8785558	A	0.843795793179042	0	lncRNA	54454-2_{3001..4453}	hg19_lincRNAsTranscripts_TCONS_l2_00004945 range=chr11:29319915-29339844 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004945 range=chr11:29319915-29339844 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	 29322915	 29324367	-	NA	NA	NA	NA	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	inter
CUST_48208_PI429285431	2.6100678	A	1.8026733	A	1.75004800900209	0	lncRNA	52071-1_{1..1523}	hg19_lincRNAsTranscripts_TCONS_l2_00001147 range=chr1:37568178-37618253 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001147 range=chr1:37568178-37618253 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 37568178	 37569700	-	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40"	NA	inter
CUST_24808_PI429285431	2.8863344	A	3.056697	P	0.888619311813729	0	lncRNA	26350-1_{1..377}	lnc-TSPYL6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSPYL6-3:1	chr2	 54773608	 54773984	-	lnc-TSPYL6-3	lnc-TSPYL6-3:1	ENSG00000234943.2	AC092839.4	SPTBN1	NA	chr2:54763608-54783814	inner
CUST_114_PI429201921	2.6279626	A	3.1128652	A	0.714545309007615	0	lncRNA	112-2_{3001..3341}	TC10002625.hg.1	TCONS_l2_00003557-XLOC_l2_001971 // Broad TUCP // linc-FAM25C-2 chr10:-:49255087-49258429 // chr10 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr10:-:49255087-49258429	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00003557-XLOC_l2_001971	linc-FAM25C-2	chr10	 49255087	 49258429	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27216_PI429285431	0.9112759	A	0.9301885	A	0.986976336150918	0	lncRNA	28759-1_{1..773}	n324349|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042615|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042615|1.5360100|-0.3080031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324349|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042615|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042615|1.5360100|-0.3080031	chr6	148023531	148024303	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15164_PI429285431	1.3821206	A	1.7083926	A	0.797594850263455	0	lncRNA	16826-1_{1..781}	lnc-TMCO5A-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMCO5A-1:10	chr15	 38316882	 38317662	+	lnc-TMCO5A-1	lnc-TMCO5A-1:10	XLOC_011213	linc-SPRED1	NA	NA	NA	inter
CUST_4956_PI429285431	1.4351819	A	2.3668952	A	0.524235406244294	0	lncRNA	4900-1_{1..1990}	"transcript_id ""ENST00000557689.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557689.1"" | genecode_v17"	chr14	 93357769	 93359758	+	ENSG00000258742.1	ENST00000557689.1	RP11-862G15.1	RP11-862G15.1-001	NA	NA	NA	inter
CUST_5760_PI429285431	1.5162567	A	1.0125207	A	1.4178805527631	0	lncRNA	5685-1_{1..701}	"transcript_id ""ENST00000585389.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585389.1"" | genecode_v17"	chr17	 19351470	 19352170	-	ENSG00000235979.3	ENST00000585389.1	AC004448.5	AC004448.5-003	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20"	NA	inter
CUST_21205_PI429285431	4.764391	P	5.072765	P	0.807551403232096	0	lncRNA	22830-1_{1..433}	lnc-NTNG2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NTNG2-1:1	chr9	134952829	134953261	+	lnc-NTNG2-1	lnc-NTNG2-1:1	ENSG00000230940.1	RP11-32B11.2	MED27	"hg19_refFlat_MED27:range=chr9:134949085-1349552315'pad=0,hg19_refFlat_MED27:range=chr9:134949085-1349552315'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MED27:range=chr9:134735925-1349552315'pad=0,hg19_refFlat_MED27:range=chr9:134735925-1349552315'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chr9:134942829-134955253"	NA	inner
CUST_8380_PI429285431	8.408785	P	8.714636	P	0.808964893075947	0	lncRNA	9958-1_{1..1804}	lnc-C10orf90-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf90-3:1	chr10	128962655	128964458	-	lnc-C10orf90-3	lnc-C10orf90-3:1	ENSG00000248776	ENST00000355226	DOCK1	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-21.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00chr10:128952655-128974289"	NA	inner
LNCA_21_P0001466	0.98495483	A	0.9487568	A	1.02540797976446	0	lncRNA	TCONS_00001387	NA	NA	NA	NA	XLOC_000701	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000701), lincRNA [TCONS_00001387]"	chr1:11371863-11371804	hs|1p36.22	Agilent_HUMAN_G3V2	TCONS_00001387	TCONS_00001387	chr1	 11371804	 11371863	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32801_PI429285431	0.92748123	A	0.9133979	A	1.00980962247015	0	lncRNA	34436-1_{1..1116}	n339446|AL355722|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1884|NULL|-1.0963500|-0.4290689	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339446|AL355722|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1884|NULL|-1.0963500|-0.4290689	chr21	 26940341	 26941456	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6286_PI429285431	0.91412485	A	0.90800065	A	1.00425399461913	0	lncRNA	6210-1_{1..1111}	"transcript_id ""ENST00000317008.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000317008.4"" | genecode_v17"	chr18	 77398928	 77400038	-	ENSG00000178412.4	ENST00000317008.4	RP11-567M16.3	RP11-567M16.3-001	CTDP1	NA	chr18:77439801-77449745	inter
CUST_18385_PI429285431	0.9289271	A	0.9240895	A	1.00335879696014	0	lncRNA	20111-1_{1..915}	lnc-METAP1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-METAP1-3:5	chr4	100196119	100197033	+	lnc-METAP1-3	lnc-METAP1-3:5	ENSG00000246090	RP11-696N14.1	ADH1A	NA	chr4:100197523-100206208	inter
CUST_1723_PI429285431	0.9246592	A	1.0175109	A	0.937667477837943	0	lncRNA	1708-1_{1..687}	"transcript_id ""ENST00000514802.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514802.1"" | genecode_v17"	chr4	 28998146	 28998832	+	ENSG00000250190.1	ENST00000514802.1	RP11-292B1.2	RP11-292B1.2-001	NA	NA	NA	inter
CUST_38735_PI429285431	0.9113127	A	1.2144177	A	0.810506128734648	0	lncRNA	39728-2_{3001..3978}	n384244|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003cjz.2||-1.2424300|-0.3184514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384244|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003cjz.2||-1.2424300|-0.3184514	chr3	 39566760	 39567737	+	NA	NA	NA	NA	MOBP	NA	chr3:39553760-39567859	inter
CUST_35485_PI429285431	2.451597	A	2.5871422	A	0.910325752981092	0	lncRNA	36893-1_{1..3000}	n342583|AK095239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5082|NULL|-1.0793400|-0.3218321	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342583|AK095239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5082|NULL|-1.0793400|-0.3218321	chr10	  5022257	  5025256	+	NA	NA	NA	NA	AKR1C1	"hg19_refFlat_CASP7:range=chr10:115451731-1154892995'pad=0,hg19_refFlat_CASP7:range=chr10:115451731-1154892995'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90chr10:5012257-5020158"	NA	inter
CUST_14326_PI429285431	3.6590405	P	4.350338	P	0.619296629769271	0	lncRNA	15984-1_{1..257}	lnc-RP11-677O4.1.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-677O4.1.1-2:2	chr18	 11490466	 11490722	-	lnc-RP11-677O4.1.1-2	lnc-RP11-677O4.1.1-2:2	XLOC_012769	linc-FAM38B-2	NA	NA	NA	inter
CUST_31205_PI429285431	0.92817223	A	0.9308325	A	0.998157740397239	0	lncRNA	32999-1_{1..2022}	n337651|S74720|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|30|NULL|4.9932500|-0.1317777	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337651|S74720|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|30|NULL|4.9932500|-0.1317777	chrX	 30322322	 30324343	-	NA	NA	NA	NA	NR0B1	NA	chrX:30322539-30327495	inner
CUST_46110_PI429285431	3.4305272	P	2.167232	A	2.4004338841936	0	lncRNA	50371-2_{3001..3102}	"gi|315138996|ref|NR_037659.1| Homo sapiens POC1 centriolar protein homolog B (Chlamydomonas) (POC1B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315138996|ref|NR_037659.1| Homo sapiens POC1 centriolar protein homolog B (Chlamydomonas) (POC1B), transcript variant 3, non-coding RNA"	Chr12	 89816495	 89816596	-	282809	NR_037659.1	NA	NA	NA	NA	NA	inter
CUST_10243_PI429285431	0.92594	A	0.92099404	A	1.00343416149621	0	lncRNA	11769-1_{1..604}	lnc-SPTSSA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPTSSA-1:1	chr14	 34697078	 34697681	-	lnc-SPTSSA-1	lnc-SPTSSA-1:1	XLOC_010990	linc-EGLN3	NA	NA	NA	inter
CUST_38189_PI429285431	0.93167716	A	0.91813284	A	1.00943241467262	0	lncRNA	39257-1_{1..2578}	n381471|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jxr.1||0.1754910|-0.2604192	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381471|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jxr.1||0.1754910|-0.2604192	chr10	 79317423	 79320000	-	NA	NA	NA	NA	KCNMA1	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40chr10:79307423-79330001"	NA	inner
CUST_9973_PI429285431	8.960486	P	8.540983	P	1.33746672595303	0	lncRNA	11497-1_{1..711}	lnc-RP11-552I14.1.1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-552I14.1.1-1:7	chr12	103571827	103572537	+	lnc-RP11-552I14.1.1-1	lnc-RP11-552I14.1.1-1:7	XLOC_009858	linc-STAB2-2	NA	NA	NA	inter
CUST_13082_PI429285431	1.042196	A	0.9127606	A	1.09386553222555	0	lncRNA	14709-1_{1..821}	lnc-CCL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCL2-2:1	chr17	 32490631	 32491451	+	lnc-CCL2-2	lnc-CCL2-2:1	XLOC_012173	linc-CCL2-1	ACCN1	NA	chr17:32480631-32483825	inter
CUST_36252_PI429285431	9.561819	P	8.293235	P	2.40924982449626	0	lncRNA	37493-3_{6001..7561}	n344786|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_335|NULL|-1.3275900|-0.1961214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344786|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_335|NULL|-1.3275900|-0.1961214	NA	     6000	     7560	NA	NA	NA	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-59.80"	NA	Unknown
CUST_14418_PI429285431	3.683161	P	3.511522	P	1.12633735419292	0	lncRNA	16078-2_{3001..4587}	lnc-CNTN1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CNTN1-1:2	chr12	 40931513	 40933099	+	lnc-CNTN1-1	lnc-CNTN1-1:2	XLOC_009713	linc-CNTN1	LOC100506072	NA	chr12:40936368-40938586	inter
CUST_24900_PI429285431	1.6154469	A	0.93881285	A	1.59840616202962	0	lncRNA	26441-1_{1..568}	lnc-RUFY4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RUFY4-1:1	chr2	218857126	218857693	+	lnc-RUFY4-1	lnc-RUFY4-1:1	ENSG00000223923.1	AC010136.2	NA	NA	NA	inter
CUST_35805_PI429285431	5.257887	P	5.098323	P	1.11694953131791	0	lncRNA	37211-2_{3001..4142}	n344481|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_29|NULL|-1.6397700|-0.2736331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344481|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_29|NULL|-1.6397700|-0.2736331	chrX	110764302	110765443	+	NA	NA	NA	NA	NA	"hg19_refFlat_EIF4B:range=chr12:53400268-534340075'pad=0,hg19_refFlat_EIF4B:range=chr12:53400268-534340075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50"	NA	inter
CUST_23514_PI429285431	1.0763264	A	1.4777368	A	0.757117751829933	0	lncRNA	25081-1_{1..1720}	lnc-LZTR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LZTR1-1:1	chr22	 21363639	 21365358	+	lnc-LZTR1-1	lnc-LZTR1-1:1	ENSG00000230513.1	THAP7-AS1	P2RX6	"hg19_refFlat_TUBA3D:range=chr2:132233773-1322404215'pad=0,hg19_refFlat_TUBA3D:range=chr2:132233773-1322404215'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_TUBA3E:range=chr2:130949404-1309559335'pad=0,hg19_refFlat_TUBA3E:range=chr2:130949404-1309559335'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-57.60;hg19_refFlat_TUBA3C:range=chr13:19748003-197558875'pad=0,hg19_refFlat_TUBA3C:range=chr13:19748003-197558875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30chr22:21369442-21374414"	NA	inter
CUST_19273_PI429285431	0.9825255	A	0.92927694	A	1.03759868765761	0	lncRNA	20941-1_{1..397}	lnc-LCE5A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LCE5A-3:1	chr1	152179335	152179731	+	lnc-LCE5A-3	lnc-LCE5A-3:1	ENSG00000236427.1	RP11-107M16.2	HRNR	NA	chr1:152184558-152189533	inter
CUST_7982_PI429285431	0.94206643	A	1.2865485	A	0.787590672227431	0	lncRNA	9593-1_{1..2162}	lnc-LONRF1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LONRF1-2:3	chr8	 12522787	 12524948	-	lnc-LONRF1-2	lnc-LONRF1-2:3	ENSG00000247397	AC068587.3	LONRF1	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.74;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10chr8:12512787-12532859"	NA	inter
CUST_2030_PI429285431	1.7546034	A	1.8195467	A	0.955982888364484	0	lncRNA	2021-1_{1..705}	"transcript_id ""ENST00000512035.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512035.1"" | genecode_v17"	chr5	    92266	    92970	+	ENSG00000249430.1	ENST00000512035.1	CTD-2231H16.1	CTD-2231H16.1-001	PLEKHG4B	NA	chr5:140373-149978	inter
CUST_35426_PI429285431	3.3738353	P	3.588249	P	0.861896356498139	0	lncRNA	36834-1_{1..2220}	n342488|AK027178|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4982|NULL|-1.0515800|-0.2797980	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342488|AK027178|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4982|NULL|-1.0515800|-0.2797980	chr3	 16014886	 16017105	-	NA	NA	NA	NA	RFTN1	NA	chr3:16357352-16441067	inner
CUST_11248_PI429285431	3.8524354	P	3.7676306	P	1.0605442375542	0	lncRNA	12806-1_{1..2992}	lnc-CDK12-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK12-1:3	chr17	 37721013	 37724004	+	lnc-CDK12-1	lnc-CDK12-1:3	XLOC_012192	linc-PPP1R1B	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50"	NA	inter
CUST_2348_PI429285431	0.9308926	A	0.9142406	A	1.01160915607048	0	lncRNA	2340-1_{1..797}	"transcript_id ""ENST00000503145.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503145.1"" | genecode_v17"	chr5	123828468	123829264	-	ENSG00000248296.1	ENST00000503145.1	CTD-2308B18.3	CTD-2308B18.3-001	NA	NA	NA	inter
CUST_6726_PI429285431	0.9175702	A	0.9161755	A	1.00096719980908	0	lncRNA	6674-1_{1..345}	"transcript_id ""ENST00000423233.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423233.1"" | genecode_v17"	chr20	 52416362	 52416706	-	ENSG00000225563.1	ENST00000423233.1	AC006076.1	AC006076.1-001	NA	NA	NA	inter
CUST_42334_PI429285431	0.92991817	A	0.9276513	A	1.00157250964786	0	lncRNA	44988-1_{1..138}	ENST00000516116 ncrna:snoRNA chromosome:GRCh37:Y:25569246:25569383:-1 gene:ENSG00000251925 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516116 ncrna:snoRNA chromosome:GRCh37:Y:25569246:25569383:-1 gene:ENSG00000251925 gene_biotype:snoRNA transcript_biotype:snoRNA	chrY	 25569246	 25569383	-	ENSG00000251925	ENST00000516116	NA	NA	NA	NA	NA	inter
CUST_16607_PI429285431	11.513703	P	11.463203	P	1.03562378150463	0	lncRNA	18307-1_{1..446}	lnc-CPEB2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPEB2-5:2	chr4	 14094833	 14095278	+	lnc-CPEB2-5	lnc-CPEB2-5:2	XLOC_003463	linc-CPEB2-4	NA	NA	NA	inter
CUST_9006_PI429285431	1.6404405	A	2.3064098	A	0.630265107449799	0	lncRNA	10534-1_{1..561}	lnc-SLC25A39-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC25A39-1:1	chr17	 42392530	 42393090	-	lnc-SLC25A39-1	lnc-SLC25A39-1:1	ENSG00000225445	AC003102.3	SLC25A39	"hg19_refFlat_RUNDC3A:range=chr17:42386201-423948725'pad=0,hg19_refFlat_RUNDC3A:range=chr17:42386201-423948725'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.10;hg19_refFlat_RUNDC3A:range=chr17:42386201-423956065'pad=0,hg19_refFlat_RUNDC3A:range=chr17:42386201-423956065'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.10chr17:42396993-42402217"	NA	inner
CUST_33217_PI429285431	2.5166168	A	0.9209511	A	3.02233944170306	0	lncRNA	34806-2_{3001..5310}	n339913|AL512695|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2362|NULL|-1.3214300|-0.3940546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339913|AL512695|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2362|NULL|-1.3214300|-0.3940546	chr18	 67513568	 67515877	+	NA	NA	NA	NA	DOK6	NA	chr18:67500568-67516323	inner
CUST_8249_PI429285431	1.0315293	A	1.9323354	A	0.53558739036709	0	lncRNA	9839-1_{1..724}	lnc-NSG1.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NSG1.1-1:4	chr4	  4639265	  4639988	+	lnc-NSG1.1-1	lnc-NSG1.1-1:4	ENSG00000247708	RP11-323F5.2	NA	NA	NA	inter
CUST_2716_PI429285431	0.9115109	A	0.90976644	A	1.0012098988684	0	lncRNA	2701-1_{1..2246}	"transcript_id ""ENST00000446811.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446811.1"" | genecode_v17"	chr6	168643618	168645863	+	ENSG00000234647.1	ENST00000446811.1	RP11-503C24.4	RP11-503C24.4-001	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90"	NA	inter
CUST_32502_PI429285431	6.319875	P	7.0592055	P	0.599017268993463	0	lncRNA	34169-1_{1..1236}	n339106|BC047484|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1536|NULL|-0.8399560|-0.1647004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339106|BC047484|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1536|NULL|-0.8399560|-0.1647004	chr2	206950355	206951590	+	NA	NA	NA	NA	INO80D	NA	chr2:206940355-206950906	inner
CUST_3654_PI429285431	0.9188709	A	0.9268835	A	0.994461483352303	0	lncRNA	3623-1_{1..868}	"transcript_id ""ENST00000442783.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442783.1"" | genecode_v17"	chr10	 36185802	 36186669	-	ENSG00000227313.1	ENST00000442783.1	RP11-309N24.1	RP11-309N24.1-001	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10"	NA	inter
LNCA_21_P0010435	0.9402374	A	0.9251608	A	1.01050509790542	0	lncRNA	TCONS_00029677	NA	NA	NA	NA	XLOC_014347	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014347), lincRNA [TCONS_00029677]"	chr22:32510999-32510940	hs|22q12.3	Agilent_HUMAN_G3V2	TCONS_00029677	TCONS_00029677	chr22	 32510940	 32510999	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46641_PI429285431	1.6731029	A	0.97753817	A	1.6195182548918	0	lncRNA	50814-3_{6001..6140}	"gi|219521904|ref|NR_026556.1| Homo sapiens ankyrin repeat domain 26 pseudogene 1 (ANKRD26P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219521904|ref|NR_026556.1| Homo sapiens ankyrin repeat domain 26 pseudogene 1 (ANKRD26P1), non-coding RNA"	Chr16	 46509249	 46509388	-	124149	NR_026556.1	NA	NA	NA	NA	NA	inter
CUST_22743_PI429285431	1.0331031	A	1.0331922	A	0.999938242493285	0	lncRNA	24326-1_{1..380}	lnc-LINC00346-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-LINC00346-2:1	chr13	111551403	111551782	-	lnc-LINC00346-2	lnc-LINC00346-2:1	ENSG00000229152.1	ANKRD10-IT1	ANKRD10	NA	chr13:111541403-111561519	inner
CUST_39790_PI429285431	1.6494682	A	0.92450166	A	1.65286230151668	0	lncRNA	40701-1_{1..3000}	n406127|NR_003528|lncRNA|Homosapiens||RefGeneNoncode|NR_003528||11.9754000|-0.1912062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406127|NR_003528|lncRNA|Homosapiens||RefGeneNoncode|NR_003528||11.9754000|-0.1912062	chr9	 39443813	 39446812	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32948_PI429285431	4.525875	P	3.849381	P	1.59825100386277	0	lncRNA	34568-1_{1..2457}	n339622|AK025305|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2066|NULL|-1.2841400|-0.4174984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339622|AK025305|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2066|NULL|-1.2841400|-0.4174984	chr3	141331748	141334204	+	NA	NA	NA	NA	RASA2	NA	chr3:141321748-141331197	inter
CUST_272_PI429285431	3.2547777	P	3.7242346	P	0.722236431221317	0	lncRNA	264-1_{1..310}	"transcript_id ""ENST00000448344.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448344.1"" | genecode_v17"	chr1	 65532310	 65532619	-	ENSG00000231485.1	ENST00000448344.1	RP4-535B20.1	RP4-535B20.1-001	NA	NA	NA	inter
CUST_31348_PI429285431	5.454785	P	3.8346524	P	3.07403288800079	0	lncRNA	33130-1_{1..2712}	n337816|AL832164|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|199|NULL|-0.9583620|-0.3605814	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337816|AL832164|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|199|NULL|-0.9583620|-0.3605814	chr15	 60780482	 60783193	-	NA	NA	NA	NA	RORA	NA	chr15:60780483-60793123	inner
CUST_47335_PI429285431	0.91212595	A	1.22268	A	0.80633203745289	0	lncRNA	51389-3_{6001..7650}	"gi|211971077|ref|NR_024389.1| Homo sapiens uncharacterized LOC100192386 (FLJ16779), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|211971077|ref|NR_024389.1| Homo sapiens uncharacterized LOC100192386 (FLJ16779), non-coding RNA"	Chr20	 61891330	 61892979	+	100192386	NR_024389.1	NA	NA	NA	"hg19_refFlat_NKAIN4:range=chr20:61872849-618858025'pad=0,hg19_refFlat_NKAIN4:range=chr20:61872849-618858025'pad=0 3'pad=0 strand=- repeatMasking=none,-100.70"	NA	inter
CUST_26155_PI429285431	7.9747734	P	7.8424034	P	1.09609283925819	0	lncRNA	27666-1_{1..2277}	lnc-NDUFS8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFS8-1:1	chr11	 67795217	 67797493	+	lnc-NDUFS8-1	lnc-NDUFS8-1:1	ENSG00000006534.11	ALDH3B1	ALDH3B1	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.21;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.51;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70chr11:67785217-67796743"	NA	inner
CUST_6261_PI429285431	0.93849504	A	1.018121	A	0.946302957944025	0	lncRNA	6186-1_{1..464}	"transcript_id ""ENST00000578035.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578035.1"" | genecode_v17"	chr18	 73885259	 73885722	-	ENSG00000266743.1	ENST00000578035.1	RP11-94B19.6	RP11-94B19.6-001	NA	NA	NA	inter
CUST_43420_PI429285431	1.8348845	A	0.92673206	A	1.87664067467768	0	lncRNA	48232-1_{1..2070}	"gi|397138865|ref|XR_159042.1| PREDICTED: Homo sapiens uncharacterized LOC100127947 (LOC100127947), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138865|ref|XR_159042.1| PREDICTED: Homo sapiens uncharacterized LOC100127947 (LOC100127947), misc_RNA"	NA	NA	NA	NA	NA	XR_159042.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	Unknown
CUST_4458_PI429285431	8.728737	P	8.647465	P	1.05795040658963	0	lncRNA	4408-1_{1..2191}	"transcript_id ""ENST00000506255.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000506255.1"" | genecode_v17"	chr12	123565931	123568121	+	ENSG00000251497.2	ENST00000506255.1	RP11-197N18.7	RP11-197N18.7-001	PITPNM2	NA	chr12:123555931-123579291	inner
CUST_11189_PI429285431	1.4330888	A	2.2785766	A	0.556522607436224	0	lncRNA	12747-1_{1..601}	lnc-ZIC1-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZIC1-5:4	chr3	147724375	147724975	+	lnc-ZIC1-5	lnc-ZIC1-5:4	XLOC_002859	linc-AGTR1-4	NA	NA	NA	inter
CUST_50307_PI429285431	0.91870403	A	1.0202708	A	0.932020265658585	0	lncRNA	54026-1_{1..215}	hg19_lincRNAsTranscripts_TCONS_l2_00029511 range=chr9:99940534-99947776 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029511 range=chr9:99940534-99947776 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 99940534	 99940748	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6688_PI429285431	1.118771	A	2.0708442	A	0.516889141344264	0	lncRNA	6637-1_{1..2112}	"transcript_id ""ENST00000373508.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000373508.1"" | genecode_v17"	chr20	 36305312	 36307423	+	ENSG00000204117.1	ENST00000373508.1	RP4-640H8.2	RP4-640H8.2-001	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90"	NA	inter
CUST_10531_PI429285431	5.248968	P	5.5365047	P	0.819299761519712	0	lncRNA	12060-1_{1..375}	lnc-TMEM106C-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM106C-1:2	chr12	 48405830	 48406204	+	lnc-TMEM106C-1	lnc-TMEM106C-1:2	XLOC_009733	linc-PFKM	COL2A1	NA	chr12:48395830-48398285	inter
CUST_26496_PI429285431	3.637816	P	4.73426	P	0.467667798564437	0	lncRNA	28005-1_{1..379}	lnc-SLC39A11-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC39A11-1:11	chr17	 70588342	 70588720	-	lnc-SLC39A11-1	lnc-SLC39A11-1:11	ENSG00000227036.2	LINC00511	NA	NA	NA	inter
CUST_13809_PI429285431	6.2997875	P	6.715937	P	0.749422137607556	0	lncRNA	15451-1_{1..1526}	lnc-TBX3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBX3-1:1	chr12	115136718	115138243	-	lnc-TBX3-1	lnc-TBX3-1:1	XLOC_010205	linc-TBX3-1	NA	NA	NA	inter
CUST_10095_PI429285431	4.6726904	P	5.4015217	P	0.603392512792753	0	lncRNA	11621-1_{1..467}	lnc-CENPP-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CENPP-3:7	chr9	 94910204	 94910670	+	lnc-CENPP-3	lnc-CENPP-3:7	XLOC_007458	linc-CENPP-4	NA	NA	NA	inter
CUST_3847_PI429285431	0.99571764	A	0.9877293	A	1.00555245339404	0	lncRNA	3816-1_{1..497}	"transcript_id ""ENST00000605240.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605240.1"" | genecode_v17"	chr11	   333192	   333688	+	ENSG00000270972.1	ENST00000605240.1	RP11-326C3.15	RP11-326C3.15-001	NA	NA	NA	inter
CUST_13756_PI429285431	1.3764284	A	1.8665867	A	0.711946974989312	0	lncRNA	15401-1_{1..1533}	lnc-GPBP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPBP1-3:1	chr5	 56965517	 56967049	+	lnc-GPBP1-3	lnc-GPBP1-3:1	XLOC_004398	linc-GAPT-1	NA	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60"	NA	inter
CUST_3119_PI429285431	1.1031748	A	0.9687769	A	1.09763462704783	0	lncRNA	3098-1_{1..569}	"transcript_id ""ENST00000521446.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521446.1"" | genecode_v17"	chr8	 58256366	 58256934	+	ENSG00000253871.1	ENST00000521446.1	RP11-756K15.2	RP11-756K15.2-002	NA	NA	NA	inter
CUST_8383_PI429285431	6.545736	P	7.1391883	P	0.662755066922848	0	lncRNA	9962-1_{1..646}	lnc-PLAC1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLAC1-1:4	chrX	133679495	133680140	-	lnc-PLAC1-1	lnc-PLAC1-1:4	ENSG00000223749	AC004383.4	NA	NA	NA	inter
CUST_51608_PI429285431	4.2182517	P	3.2541125	P	1.95089914860059	0	lncRNA	55174-1_{1..230}	hg19_lincRNAsTranscripts_TCONS_l2_00011199 range=chr17:36309310-36325402 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011199 range=chr17:36309310-36325402 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 36309310	 36309539	-	NA	NA	NA	NA	TBC1D3	NA	chr17:36333639-36335402	inter
CUST_10583_PI429285431	0.9275243	A	0.9130651	A	1.01007274570823	0	lncRNA	12113-1_{1..340}	lnc-C15orf2-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-6:4	chr15	 24638619	 24638958	+	lnc-C15orf2-6	lnc-C15orf2-6:4	XLOC_011178	linc-C15orf2-4	NA	NA	NA	inter
CUST_33592_PI429285431	4.459757	P	4.862625	P	0.75635319833568	0	lncRNA	35157-1_{1..369}	n340347|AF009276|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2808|NULL|-1.1635500|-0.1663401	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340347|AF009276|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2808|NULL|-1.1635500|-0.1663401	chr5	  9185969	  9186337	-	NA	NA	NA	NA	SEMA5A	NA	chr5:9175969-9196338	inner
CUST_43166_PI429285431	6.3656077	P	6.8951106	P	0.692793404229411	0	lncRNA	47981-1_{1..3000}	ENST00000571452 havana:sense_intronic chromosome:GRCh37:HG748_PATCH:77594114:77600003:-1 gene:ENSG00000263278 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,ncbi,"	>ENST00000571452 havana:sense_intronic chromosome:GRCh37:HG748_PATCH:77594114:77600003:-1 gene:ENSG00000263278 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chrHG748_PATCH	 77594114	 77597113	-	ENSG00000263278	ENST00000571452	NA	NA	NA	NA	NA	Unknown
CUST_18842_PI429285431	3.6808505	P	3.693655	P	0.991163867051106	0	lncRNA	20537-1_{1..600}	lnc-AL669831.1-5:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AL669831.1-5:7	chr1	   788771	   789370	+	lnc-AL669831.1-5	lnc-AL669831.1-5:7	ENSG00000228794	RP11-206L10.11	NA	NA	NA	inter
CUST_8369_PI429285431	0.9855152	A	0.96385276	A	1.01512855455738	0	lncRNA	9947-2_{3001..3998}	lnc-ARFGEF2-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARFGEF2-2:6	chr20	 47107976	 47108973	+	lnc-ARFGEF2-2	lnc-ARFGEF2-2:6	ENSG00000248368	XLOC_013552	NA	NA	NA	inter
CUST_40473_PI429285431	5.4516354	P	4.640945	P	1.75405064067028	0	lncRNA	41242-1_{1..3000}	n409406|NR_033805|lncRNA|Homosapiens||RefGeneNoncode|NR_033805||0.3515550|-0.2866571	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n409406|NR_033805|lncRNA|Homosapiens||RefGeneNoncode|NR_033805||0.3515550|-0.2866571	chr10	 28808845	 28811844	-	NA	NA	NA	NA	WAC	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.24;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70chr10:28821427-28831283"	NA	inter
CUST_33295_PI429285431	1.074039	A	1.0560365	A	1.01255656197579	0	lncRNA	34878-1_{1..2113}	n340007|AL049231|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2460|NULL|-1.0989700|-0.4400210	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340007|AL049231|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2460|NULL|-1.0989700|-0.4400210	chr10	 29835749	 29837861	-	NA	NA	NA	NA	SVIL	NA	chr10:29825749-29847842	inner
CUST_42001_PI429285431	0.96276367	A	0.96318835	A	0.999705677576705	0	lncRNA	43836-1_{1..76}	ENST00000578268 ncrna:miRNA chromosome:GRCh37:17:29421368:29421443:-1 gene:ENSG00000265444 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578268 ncrna:miRNA chromosome:GRCh37:17:29421368:29421443:-1 gene:ENSG00000265444 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 29421368	 29421443	-	ENSG00000265444	ENST00000578268	NA	NA	NF1	NA	chr17:29421945-29431443	inter
CUST_35034_PI429285431	0.9252937	A	0.9217187	A	1.002481073953	0	lncRNA	36446-1_{1..473}	n341976|AF085967|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4457|NULL|-1.0396600|-0.2819200	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341976|AF085967|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4457|NULL|-1.0396600|-0.2819200	chr12	 81540318	 81540790	-	NA	NA	NA	NA	ACSS3	NA	chr12:81530318-81550784	inner
CUST_10461_PI429285431	0.9196936	A	0.91936964	A	1.00022457717429	0	lncRNA	11987-1_{1..1126}	lnc-OR5H15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR5H15-1:1	chr3	 97915250	 97916375	+	lnc-OR5H15-1	lnc-OR5H15-1:1	XLOC_002733	linc-OR5H6	OR5H6	NA	chr3:97916055-97925894	inter
CUST_26274_PI429285431	1.7878168	A	1.7670492	A	1.01449911038865	0	lncRNA	27780-1_{1..432}	lnc-CEP170-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CEP170-1:9	chr1	243245192	243245623	-	lnc-CEP170-1	lnc-CEP170-1:9	ENSG00000214837.3	RP11-261C10.3	NA	NA	NA	inter
LNCA_21_P0012214	0.93310744	A	0.91393644	A	1.01337700676092	0	lncRNA	ENST00000431661	NA	NA	NA	NA	XLOC_l2_009028	NA	ENST00000431661	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009028), lincRNA [TCONS_l2_00017370]"	chr21:30601303-30656525	hs|21q21.3	Agilent_HUMAN_G3V2	ENST00000431661	ENST00000431661	chr21	 30601303	 30656525	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32953_PI429285431	0.90471643	A	0.8944781	A	1.00712191060642	0	lncRNA	34573-1_{1..1825}	n339630|AK093381|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2074|NULL|2.1185900|-0.2555690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339630|AK093381|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2074|NULL|2.1185900|-0.2555690	chr3	142668005	142669829	-	NA	NA	NA	NA	PAQR9	NA	chr3:142680073-142682178	inner
CUST_2369_PI429285431	2.0338216	A	0.91351473	A	2.17393208443869	0	lncRNA	2362-1_{1..532}	"transcript_id ""ENST00000507058.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507058.1"" | genecode_v17"	chr5	134456216	134456747	+	ENSG00000248753.1	ENST00000507058.1	CTC-276P9.2	CTC-276P9.2-001	NA	NA	NA	inter
CUST_6894_PI429285431	5.8503594	P	5.9160137	P	0.955511869643647	0	lncRNA	6844-1_{1..280}	"transcript_id ""ENST00000436359.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436359.1"" | genecode_v17"	chr21	 44885189	 44885468	+	ENSG00000223975.1	ENST00000436359.1	AP001048.4	AP001048.4-001	NA	NA	NA	inter
CUST_11755_PI429285431	0.92681897	A	1.3510373	A	0.745242403737218	0	lncRNA	13335-1_{1..391}	lnc-TBC1D1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBC1D1-1:1	chr4	 38288782	 38289172	+	lnc-TBC1D1-1	lnc-TBC1D1-1:1	XLOC_003508	linc-KLF3-5	NA	NA	NA	inter
CUST_40557_PI429285431	1.3527226	A	1.2637736	A	1.06359507360436	0	lncRNA	41315-1_{1..2741}	n409750|NR_034151|lncRNA|Homosapiens||RefGeneNoncode|NR_034151||-0.1107270|-0.2598655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n409750|NR_034151|lncRNA|Homosapiens||RefGeneNoncode|NR_034151||-0.1107270|-0.2598655	chr1	203267885	203270625	-	NA	NA	NA	NA	BTG2	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60chr1:203274664-203278730"	NA	inter
CUST_10568_PI429285431	0.9050206	A	0.89521194	A	1.00682200963869	0	lncRNA	12100-1_{1..2046}	lnc-FAM55B-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM55B-8:1	chr11	115626343	115628388	+	lnc-FAM55B-8	lnc-FAM55B-8:1	XLOC_009283	linc-APOC3-4	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20"	NA	inter
CUST_26751_PI429285431	0.9181166	A	0.91836315	A	0.999829119164426	0	lncRNA	28246-1_{1..378}	n323797|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058630|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058630|-0.7186770|-0.2193865	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323797|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058630|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058630|-0.7186770|-0.2193865	chrX	144122140	144122517	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23641_PI429285431	4.1837344	P	3.4976664	P	1.60889257365257	0	lncRNA	25206-1_{1..2224}	lnc-TMEM184A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM184A-1:1	chr7	  1584330	  1586553	-	lnc-TMEM184A-1	lnc-TMEM184A-1:1	ENSG00000241181.1	AC093734.13	MAFK	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-58.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10chr7:1574330-1582679"	NA	inner
CUST_25370_PI429285431	0.9860556	A	1.1833934	A	0.872158470213744	0	lncRNA	26901-1_{1..535}	lnc-ABHD12B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ABHD12B-1:1	chr14	 51379720	 51380254	+	lnc-ABHD12B-1	lnc-ABHD12B-1:1	ENSG00000258745.1	RP11-218E20.5	PYGL	"hg19_refFlat_PYGB:range=chr20:25228815-252771585'pad=0,hg19_refFlat_PYGB:range=chr20:25228815-252771585'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_PYGL:range=chr14:51372110-514111215'pad=0,hg19_refFlat_PYGL:range=chr14:51372110-514111215'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40chr14:51371935-51390076"	NA	inner
CUST_51255_PI429285431	5.1714044	P	5.4046645	P	0.850710343169664	0	lncRNA	54864-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008482 range=chr15:28916540-28930814 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008482 range=chr15:28916540-28930814 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28916540	 28919539	+	NA	NA	NA	NA	NA	"hg19_refFlat_HERC2:range=chr15:28356909-285665795'pad=0,hg19_refFlat_HERC2:range=chr15:28356909-285665795'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_FRMD6:range=chr14:52156555-521947475'pad=0,hg19_refFlat_FRMD6:range=chr14:52156555-521947475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_36470_PI429285431	0.91970754	A	0.90500826	A	1.01024084668328	0	lncRNA	37678-1_{1..1885}	n344978|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_527|NULL|-1.4091800|-0.4207011	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344978|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_527|NULL|-1.4091800|-0.4207011	chr8	 28480294	 28482178	+	NA	NA	NA	NA	EXTL3	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10chr8:28559153-28566150"	NA	inter
CUST_8506_PI429285431	5.2820296	P	5.789403	P	0.703502082874233	0	lncRNA	10069-1_{1..621}	lnc-EVX1-8:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EVX1-8:4	chr7	 27191913	 27192533	+	lnc-EVX1-8	lnc-EVX1-8:4	ENSG00000254369	RP1-170O19.2	HOXA5	"hg19_refFlat_HOXA6:range=chr7:27185277-271873685'pad=0,hg19_refFlat_HOXA6:range=chr7:27185277-271873685'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50chr7:27181913-27183287"	NA	inter
CUST_38398_PI429285431	1.2144177	A	1.1740122	A	1.02840284043908	0	lncRNA	39434-2_{3001..3373}	n382330|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yxd.2||-1.3837000|-0.4524243	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n382330|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yxd.2||-1.3837000|-0.4524243	chr15	 25233006	 25233378	+	NA	NA	NA	NA	SNRPN	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80chr15:25220006-25243379"	NA	inter
CUST_30912_PI429285431	8.458972	P	8.8304825	P	0.772972771377784	0	lncRNA	32700-1_{1..201}	n336958|BC104422|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000337716|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000337716|-1.1562300|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336958|BC104422|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000337716|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000337716|-1.1562300|-1.0000000	chr6	 41681656	 41681856	+	NA	NA	NA	NA	TFEB	NA	chr6:41671656-41691857	inner
CUST_21775_PI429285431	1.1994561	A	1.5310569	A	0.794654253969819	0	lncRNA	23385-1_{1..1054}	lnc-SNRNP25-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNRNP25-1:2	chr16	    74246	    75299	+	lnc-SNRNP25-1	lnc-SNRNP25-1:2	ENSG00000231439.3	WASIR2	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10"	NA	inter
CUST_37122_PI429285431	0.9290396	A	1.6689062	A	0.598794717802625	0	lncRNA	38245-1_{1..1192}	n345563|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1112|NULL|-1.2923900|-0.2902632	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345563|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1112|NULL|-1.2923900|-0.2902632	chr2	201674363	201675554	-	NA	NA	NA	NA	BZW1	NA	chr2:201676269-201685555	inter
CUST_9424_PI429285431	1.7892443	A	0.9122677	A	1.83652253661848	0	lncRNA	10930-1_{1..706}	lnc-SCRG1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCRG1-1:4	chr4	174291063	174291768	-	lnc-SCRG1-1	lnc-SCRG1-1:4	XLOC_004165	linc-HMGB2	SAP30	NA	chr4:174292093-174298683	inter
CUST_22745_PI429285431	2.413493	A	2.491056	A	0.947657077497439	0	lncRNA	24328-1_{1..319}	lnc-TUBA1C-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUBA1C-1:5	chr12	 49541446	 49541764	+	lnc-TUBA1C-1	lnc-TUBA1C-1:5	ENSG00000258017.1	RP11-386G11.10	NA	NA	NA	inter
LNCA_21_P0007126	0.92461795	A	0.9099057	A	1.01024992890946	0	lncRNA	AK091996	NA	AK091996	NA	Hs.587688	XLOC_009181	NA	NA	THC2634418	NA	"BROAD Institute lincRNA (XLOC_009181), lincRNA [TCONS_00019099]"	chr11:67658752-67658811	hs|11q13.2	Agilent_HUMAN_G3V2	AK091996	AK091996	chr11	 67658752	 67658811	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19141_PI429285431	0.92467344	A	1.1496577	A	0.855604360392147	0	lncRNA	20816-1_{1..1532}	lnc-TMEM133-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TMEM133-1:1	NA	NA	     1531	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37371_PI429285431	1.8920261	A	0.9184497	A	1.96370252914051	0	lncRNA	38476-1_{1..706}	n345821|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1370|NULL|-1.6740000|-0.2627102	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345821|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1370|NULL|-1.6740000|-0.2627102	chr8	 17661381	 17662086	-	NA	NA	NA	NA	MTUS1	NA	chr8:17651381-17658426	inter
CUST_19846_PI429285431	5.30725	P	5.021276	P	1.2192331210703	0	lncRNA	21503-1_{1..883}	lnc-PTPRB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPRB-1:1	chr12	 70636846	 70637728	-	lnc-PTPRB-1	lnc-PTPRB-1:1	ENSG00000257815.1	RP11-611E13.2	CNOT2	NA	chr12:70636774-70647140	inner
CUST_8710_PI429285431	2.9395754	A	3.7073514	P	0.587322169085894	0	lncRNA	10254-1_{1..396}	lnc-HAND1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HAND1-2:3	chr5	153825298	153825693	-	lnc-HAND1-2	lnc-HAND1-2:3	ENSG00000245275	CTB-157D17.1	SAP30L	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80chr5:153825517-153835379"	NA	inter
CUST_5654_PI429285431	1.3623391	A	1.5192286	A	0.896956857435513	0	lncRNA	5580-1_{1..605}	"transcript_id ""ENST00000566191.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566191.1"" | genecode_v17"	chr16	 81772679	 81773283	+	ENSG00000261218.1	ENST00000566191.1	RP11-960L18.1	RP11-960L18.1-001	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_968_PI429285431	0.91989565	A	0.9082366	A	1.0081141805966	0	lncRNA	957-1_{1..859}	"transcript_id ""ENST00000598371.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598371.1"" | genecode_v17"	chr2	 98086771	 98087629	+	ENSG00000241481.2	ENST00000598371.1	AC159540.2	AC159540.2-002	NA	"hg19_refFlat_NEBL:range=chr10:21074676-214627625'pad=0,hg19_refFlat_NEBL:range=chr10:21074676-214627625'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_NEBL:range=chr10:21074812-214627625'pad=0,hg19_refFlat_NEBL:range=chr10:21074812-214627625'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30"	NA	inter
CUST_48873_PI429285431	4.602148	P	4.7446795	P	0.905928125860384	0	lncRNA	52709-1_{1..710}	hg19_lincRNAsTranscripts_TCONS_l2_00019222 range=chr3:36933696-36949906 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019222 range=chr3:36933696-36949906 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 36933696	 36934405	-	NA	NA	NA	NA	TRANK1	NA	chr3:36923696-36959906	inner
CUST_30135_PI429285431	0.90574473	A	1.336076	A	0.742091367571045	0	lncRNA	31909-1_{1..382}	n334782|AJ227893|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245042|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245042|-1.0671800|-0.3439427	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334782|AJ227893|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245042|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245042|-1.0671800|-0.3439427	chr10	104014468	104014849	+	NA	NA	NA	NA	GBF1	NA	chr10:104005255-104028531	inner
CUST_10563_PI429285431	6.7746825	P	6.576514	P	1.14724100875933	0	lncRNA	12094-1_{1..915}	lnc-AL137145.1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL137145.1-2:6	chr10	  6626080	  6626994	+	lnc-AL137145.1-2	lnc-AL137145.1-2:6	XLOC_008370	linc-ITIH2-10	NA	NA	NA	inter
CUST_43110_PI429285431	0.90992385	A	0.90229213	A	1.00530392145332	0	lncRNA	47822-1_{1..147}	ENST00000516257 ncrna:snRNA chromosome:GRCh37:15:53944174:53944320:1 gene:ENSG00000252066 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516257 ncrna:snRNA chromosome:GRCh37:15:53944174:53944320:1 gene:ENSG00000252066 gene_biotype:snRNA transcript_biotype:snRNA	chr15	 53944174	 53944320	+	ENSG00000252066	ENST00000516257	NA	NA	WDR72	NA	chr15:53934174-53954320	inner
CUST_36704_PI429285431	1.4497516	A	1.3134388	A	1.09909249306439	0	lncRNA	37885-1_{1..924}	n345192|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_741|NULL|-1.3717300|-0.2344544	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345192|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_741|NULL|-1.3717300|-0.2344544	chr12	104760804	104761727	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30"	NA	inter
CUST_47512_PI429285431	6.312072	P	5.5029917	P	1.75209414848757	0	lncRNA	51523-2_{3001..4264}	"gi|239787905|ref|NR_027780.1| Homo sapiens HMG box domain containing 4 (HMGXB4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239787905|ref|NR_027780.1| Homo sapiens HMG box domain containing 4 (HMGXB4), transcript variant 2, non-coding RNA"	Chr22	 35656445	 35657708	+	10042	NR_027780.1	NA	NA	NA	NA	NA	inter
CUST_26061_PI429285431	4.0450745	P	4.5876856	P	0.686527254363472	0	lncRNA	27574-1_{1..679}	lnc-SOX15-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SOX15-1:3	chr17	  7486218	  7486896	-	lnc-SOX15-1	lnc-SOX15-1:3	ENSG00000233223.2	AC113189.5	FXR2	NA	chr17:7494548-7496836	inter
CUST_50167_PI429285431	6.008771	P	5.6996264	P	1.23897287267487	0	lncRNA	53893-1_{1..518}	hg19_lincRNAsTranscripts_TCONS_l2_00028634 range=chr9:15007843-15019701 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028634 range=chr9:15007843-15019701 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 15007843	 15008360	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23504_PI429285431	1.6193426	A	1.8801378	A	0.834627753616483	0	lncRNA	25071-1_{1..532}	lnc-C4orf33-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C4orf33-1:4	chr4	130849723	130850254	+	lnc-C4orf33-1	lnc-C4orf33-1:4	ENSG00000249618.1	RP11-422J15.1	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10"	NA	inter
CUST_248_PI429201921	0.916341	A	1.2410572	A	0.79845543920614	0	lncRNA	187-3_{6001..6372}	TC0X001962.hg.1	TCONS_00017032-XLOC_008105 // Rinn lincRNAs // linc-PRKX-3 chrX:-:4545240-4551613 // chrX // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrX:-:4545240-4551613	NA	Affy_HUMAN_HTA2.0	TCONS_00017032-XLOC_008105	linc-PRKX-3	chrX	  4545240	  4551613	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37789_PI429285431	0.92164284	A	0.9093787	A	1.00853708892588	0	lncRNA	38883-3_{6001..7175}	n346297|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1847|NULL|-1.3300400|-0.2943890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346297|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1847|NULL|-1.3300400|-0.2943890	chr20	 39623034	 39624208	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80"	NA	inter
CUST_20675_PI429285431	0.9171535	A	0.92175865	A	0.996813042426244	0	lncRNA	22312-1_{1..1717}	lnc-SDIM1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SDIM1-3:3	chr6	166401017	166402733	-	lnc-SDIM1-3	lnc-SDIM1-3:3	ENSG00000223414.2	LINC00473	NA	NA	NA	inter
CUST_39870_PI429285431	1.4678851	A	2.5285578	A	0.479408468905891	0	lncRNA	40766-1_{1..3000}	n406539|NR_024052_2|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_2||0.2729430|-0.2831099	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406539|NR_024052_2|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_2||0.2729430|-0.2831099	chr6	  1548842	  1551841	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50"	NA	inter
CUST_22719_PI429285431	0.9484501	A	0.91746557	A	1.021709126882	0	lncRNA	24303-1_{1..646}	lnc-CDK5-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK5-2:7	chr7	150720532	150721177	-	lnc-CDK5-2	lnc-CDK5-2:7	ENSG00000181652.11	ATG9B	ABCB8	NA	chr7:150725510-150730603	inter
CUST_47193_PI429285431	6.6337748	P	6.983148	P	0.784925046014006	0	lncRNA	51268-1_{1..1348}	"gi|312032428|ref|NR_037161.1| Homo sapiens ZNF582 antisense RNA 1 (head to head) (ZNF582-AS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|312032428|ref|NR_037161.1| Homo sapiens ZNF582 antisense RNA 1 (head to head) (ZNF582-AS1), transcript variant 3, non-coding RNA"	Chr19	 56905045	 56906392	+	386758	NR_037161.1	NA	NA	NA	NA	NA	inter
CUST_39763_PI429285431	0.95840883	A	0.926324	A	1.02248865084308	0	lncRNA	40680-1_{1..1456}	n405915|NR_003187|lncRNA|Homosapiens||RefGeneNoncode|NR_003187||4.7581600|-0.1056731	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405915|NR_003187|lncRNA|Homosapiens||RefGeneNoncode|NR_003187||4.7581600|-0.1056731	chr7	 74572383	 74573838	-	NA	NA	NA	NA	GTF2IRD2B	NA	chr7:74562383-74565623	inter
CUST_41831_PI429285431	6.462761	P	4.6261654	P	3.5716621010487	0	lncRNA	43439-1_{1..96}	ENST00000390181 ncrna:miRNA chromosome:GRCh37:17:58888318:58888413:1 gene:ENSG00000211515 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390181 ncrna:miRNA chromosome:GRCh37:17:58888318:58888413:1 gene:ENSG00000211515 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 58888318	 58888413	+	ENSG00000211515	ENST00000390181	NA	NA	BCAS3	NA	chr17:58878318-58898413	inner
CUST_16007_PI429285431	2.991817	A	3.2272606	A	0.849423778081436	0	lncRNA	17704-1_{1..3000}	lnc-CTR9-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTR9-3:8	chr11	 10928002	 10931001	+	lnc-CTR9-3	lnc-CTR9-3:8	XLOC_009065	linc-USP47-3	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60"	NA	inter
CUST_9014_PI429285431	3.0869412	A	3.4165883	A	0.795731105041251	0	lncRNA	10541-1_{1..832}	lnc-TMPRSS11E-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMPRSS11E-1:7	chr4	 68945839	 68946670	+	lnc-TMPRSS11E-1	lnc-TMPRSS11E-1:7	ENSG00000248049	RP11-453E17.1	TMPRSS11F	"hg19_refFlat_SYT14:range=chr1:210187031-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210187031-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_SYT14:range=chr1:210111610-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111610-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60chr4:68935839-68956363"	NA	inner
CUST_6783_PI429285431	0.9260085	A	0.9585688	A	0.977683696330764	0	lncRNA	6730-1_{1..729}	"transcript_id ""ENST00000602654.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602654.1"" | genecode_v17"	chr21	 17947038	 17947766	-	ENSG00000269950.1	ENST00000602654.1	AP000962.2	AP000962.2-001	NA	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80"	NA	inter
CUST_50334_PI429285431	0.92403704	A	1.1155661	A	0.875677130972487	0	lncRNA	54051-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00029080 range=chr9:132264726-132275305 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029080 range=chr9:132264726-132275305 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132267726	132270725	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00"	NA	inter
CUST_37670_PI429285431	7.908114	P	8.49582	P	0.665400105465641	0	lncRNA	38763-1_{1..1330}	n346155|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1705|NULL|-1.5852300|-0.1210343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346155|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1705|NULL|-1.5852300|-0.1210343	chr20	 34146526	 34147855	-	NA	NA	NA	NA	ERGIC3	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr20:34136526-34145405"	NA	inter
CUST_7767_PI429285431	1.4978681	A	1.3074859	A	1.14106596799911	0	lncRNA	9394-1_{1..3000}	lnc-IL18BP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL18BP-1:2	chr11	 71731372	 71734371	+	lnc-IL18BP-1	lnc-IL18BP-1:2	ENSG00000251143	ENST00000502284	NUMA1	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NUMA1:range=chr11:71714573-717469895'pad=0,hg19_refFlat_NUMA1:range=chr11:71714573-717469895'pad=0 3'pad=0 strand=- repeatMasking=none,-104.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30chr11:71721372-71741956"	NA	inner
CUST_42751_PI429285431	0.98701036	A	0.9233883	A	1.04508628512992	0	lncRNA	45709-1_{1..72}	ENST00000365272 ncrna:snoRNA chromosome:GRCh37:14:101442162:101442233:1 gene:ENSG00000202142 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365272 ncrna:snoRNA chromosome:GRCh37:14:101442162:101442233:1 gene:ENSG00000202142 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101442162	101442233	+	ENSG00000202142	ENST00000365272	NA	NA	NA	NA	NA	inter
CUST_10269_PI429285431	0.92470837	A	1.0694472	A	0.904543111500621	0	lncRNA	11794-1_{1..1927}	lnc-MAX-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAX-2:2	chr14	 65714356	 65716282	-	lnc-MAX-2	lnc-MAX-2:2	XLOC_011054	linc-MAX-4	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00"	NA	inter
CUST_23130_PI429285431	0.917134	A	0.91644645	A	1.00047668692311	0	lncRNA	24701-1_{1..516}	lnc-MAT2B-3:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAT2B-3:18	chr5	164150919	164151434	+	lnc-MAT2B-3	lnc-MAT2B-3:18	ENSG00000241956.5	CTC-340A15.2	NA	"hg19_refFlat_RPS15:range=chr19:1438425-14404615'pad=0,hg19_refFlat_RPS15:range=chr19:1438425-14404615'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80"	NA	inter
CUST_8083_PI429285431	0.915497	A	0.90861005	A	1.00478508208967	0	lncRNA	9689-1_{1..524}	lnc-WDR54-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR54-1:2	chr2	 74618286	 74618809	+	lnc-WDR54-1	lnc-WDR54-1:2	ENSG00000237737	AC005041.9	DCTN1	NA	chr2:74608286-74619214	inner
CUST_39444_PI429285431	1.3836224	A	1.7485342	A	0.776516346328173	0	lncRNA	40389-2_{3001..5128}	n386783|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010uad.1||1.6545300|-0.2744367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n386783|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010uad.1||1.6545300|-0.2744367	chr15	 24412925	 24415052	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5539_PI429285431	1.9196712	A	1.5922791	A	1.2547431760603	0	lncRNA	5469-1_{1..584}	"transcript_id ""ENST00000568471.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568471.1"" | genecode_v17"	chr16	 51069029	 51069612	-	ENSG00000260605.1	ENST00000568471.1	RP11-883G14.3	RP11-883G14.3-001	NA	NA	NA	inter
CUST_15634_PI429285431	1.8814731	A	2.5543282	A	0.627264099637785	0	lncRNA	17323-1_{1..825}	lnc-NOX3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOX3-4:1	chr6	156694875	156695699	-	lnc-NOX3-4	lnc-NOX3-4:1	XLOC_005890	linc-NOX3-5	NA	NA	NA	inter
CUST_33442_PI429285431	1.7078501	A	2.204451	A	0.708774743065656	0	lncRNA	35020-1_{1..648}	n340176|AF086154|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2637|NULL|-1.0472500|-0.2420506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n340176|AF086154|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2637|NULL|-1.0472500|-0.2420506	chr10	134325129	134325776	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44983_PI429285431	2.8530369	A	2.8010354	A	1.03670217889995	0	lncRNA	49493-1_{1..1109}	"gi|239787878|ref|NR_027777.1| Homo sapiens postmeiotic segregation increased 2 pseudogene 5 (PMS2P5), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239787878|ref|NR_027777.1| Homo sapiens postmeiotic segregation increased 2 pseudogene 5 (PMS2P5), transcript variant 3, non-coding RNA"	NW_003871064.1	  2420004	  2421112	+	5383	NR_027777.2	NA	NA	NA	NA	NA	Unknown
CUST_40086_PI429285431	10.0827	P	10.18618	P	0.930785086199309	0	lncRNA	40933-1_{1..1477}	n407416|NR_026871|lncRNA|Homosapiens||RefGeneNoncode|NR_026871||1.8164200|-0.1530649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407416|NR_026871|lncRNA|Homosapiens||RefGeneNoncode|NR_026871||1.8164200|-0.1530649	chr1	  1353799	  1355275	-	NA	NA	NA	NA	TMEM88B	NA	chr1:1361508-1363167	inner
CUST_6764_PI429285431	0.929261	A	1.2478733	A	0.801840781657111	0	lncRNA	6712-1_{1..3000}	"transcript_id ""ENST00000458468.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000458468.1"" | genecode_v17"	chr21	 17442842	 17445841	+	ENSG00000215386.6	ENST00000458468.1	LINC00478	LINC00478-001	NA	NA	NA	inter
CUST_28294_PI429285431	0.9461503	A	0.93013155	A	1.01116522238446	0	lncRNA	29937-1_{1..606}	n325597|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000126742|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000126742|-1.3507600|-0.2990183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325597|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000126742|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000126742|-1.3507600|-0.2990183	chr15	 24191311	 24191916	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5734_PI429285431	5.1015534	P	5.832046	P	0.602698090880399	0	lncRNA	5658-1_{1..405}	"transcript_id ""ENST00000457609.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457609.1"" | genecode_v17"	chr17	 13836037	 13836441	-	ENSG00000233852.1	ENST00000457609.1	AC005304.1	AC005304.1-001	NA	NA	NA	inter
CUST_6969_PI429285431	1.6029097	A	2.2531524	A	0.63717311503565	0	lncRNA	6917-1_{1..819}	"transcript_id ""ENST00000440255.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440255.1"" | genecode_v17"	chr22	 28072556	 28073374	-	ENSG00000227838.1	ENST00000440255.1	RP1-213J1P__B.1	RP1-213J1P__B.1-001	NA	NA	NA	inter
CUST_9002_PI429285431	2.4437544	A	2.0582132	A	1.30634974780259	0	lncRNA	10530-2_{3001..3181}	lnc-PNKP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PNKP-1:2	chr19	 50355267	 50355447	-	lnc-PNKP-1	lnc-PNKP-1:2	ENSG00000245041	ENST00000501766	PTOV1	NA	chr19:50354416-50363999	inter
CUST_29177_PI429285431	1.586771	A	1.9826324	A	0.760035441449782	0	lncRNA	30923-1_{1..610}	n326691|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007156|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007156|-1.2726100|-0.2501019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326691|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007156|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007156|-1.2726100|-0.2501019	chr1	 17916768	 17917377	+	NA	NA	NA	NA	ARHGEF10L	NA	chr1:17906768-17959060	inner
CUST_34944_PI429285431	0.916515	A	0.9195149	A	0.997922788169785	0	lncRNA	36362-1_{1..1705}	n341863|AK057226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4343|NULL|-1.0723600|-0.2437130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341863|AK057226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4343|NULL|-1.0723600|-0.2437130	chr6	 44519313	 44521017	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19921_PI429285431	0.92535555	A	0.92234004	A	1.00209237822905	0	lncRNA	21576-1_{1..462}	lnc-FBN2-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBN2-6:2	chr5	129241273	129241734	-	lnc-FBN2-6	lnc-FBN2-6:2	ENSG00000251680.1	CTC-575N7.1	CHSY3	"hg19_refFlat_CHSY3:range=chr5:129240523-1295214845'pad=0,hg19_refFlat_CHSY3:range=chr5:129240523-1295214845'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40chr5:129240523-129251354"	NA	inner
CUST_7559_PI429285431	0.91776484	A	0.91239697	A	1.0037276544423	0	lncRNA	9195-1_{1..2050}	lnc-AC005609.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC005609.1-2:1	chr5	140175754	140177803	-	lnc-AC005609.1-2	lnc-AC005609.1-2:1	ENSG00000249821	ENST00000508944	PCDHA3	"hg19_refFlat_PCDHA1:range=chr5:140165876-1403895225'pad=0,hg19_refFlat_PCDHA1:range=chr5:140165876-1403895225'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.30;hg19_refFlat_PCDHA1:range=chr5:140165876-1401682995'pad=0,hg19_refFlat_PCDHA1:range=chr5:140165876-1401682995'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.30chr5:140180783-140185769"	NA	inner
CUST_37073_PI429285431	1.5570319	A	0.94866014	A	1.52453762928646	0	lncRNA	38201-1_{1..398}	n345518|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1067|NULL|-1.2900300|-0.3095386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345518|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1067|NULL|-1.2900300|-0.3095386	chr2	 38376125	 38376522	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30677_PI429285431	0.9575592	A	0.9718853	A	0.990119044786612	0	lncRNA	32459-1_{1..313}	n336158|X92049|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324527|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324527|1.0736600|-0.1956225	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336158|X92049|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324527|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324527|1.0736600|-0.1956225	chr14	 22392616	 22392928	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30658_PI429285431	10.701177	P	11.096859	P	0.760129958192619	0	lncRNA	32440-1_{1..272}	n336094|X87195|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324268|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324268|-1.2380800|-0.3579502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336094|X87195|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324268|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324268|-1.2380800|-0.3579502	chrX	153664501	153664772	+	NA	NA	NA	NA	GDI1	NA	chrX:153665259-153671814	inner
CUST_48694_PI429285431	1.6455553	A	1.8032908	A	0.896431033865887	0	lncRNA	52535-1_{1..374}	hg19_lincRNAsTranscripts_TCONS_l2_00014782 range=chr2:111194109-111196088 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014782 range=chr2:111194109-111196088 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	111194109	111194482	-	NA	NA	NA	NA	LIMS3L	NA	chr2:111203460-111206088	inter
CUST_38144_PI429285431	5.853554	P	3.636647	P	4.64895673616639	0	lncRNA	39215-1_{1..1726}	n381331|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hcx.2||-1.2659500|-0.4760882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381331|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hcx.2||-1.2659500|-0.4760882	chr1	205577072	205578797	-	NA	NA	NA	NA	ELK4	NA	chr1:205577071-205588798	inner
CUST_18693_PI429285431	6.586548	P	6.948114	P	0.77831927992095	0	lncRNA	20392-1_{1..922}	lnc-ZNF8-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF8-4:2	chr19	 58826114	 58827035	+	lnc-ZNF8-4	lnc-ZNF8-4:2	ENSG00000142396	AC020915.4	NA	NA	NA	inter
CUST_37226_PI429285431	1.480423	A	0.9389242	A	1.45548381826749	0	lncRNA	38337-2_{3001..3861}	n345660|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1209|NULL|-1.3176000|-0.4580732	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345660|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1209|NULL|-1.3176000|-0.4580732	chr5	 12656169	 12657029	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-23.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.59;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-62.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-23.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30"	NA	inter
CUST_10975_PI429285431	10.418081	P	10.191792	P	1.16982197877729	0	lncRNA	12518-1_{1..857}	lnc-DNAH17-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAH17-1:2	chr17	 76614112	 76614968	-	lnc-DNAH17-1	lnc-DNAH17-1:2	XLOC_012582	linc-DNAH17	NA	NA	NA	inter
CUST_44057_PI429285431	3.9073265	P	4.362746	P	0.729298079460211	0	lncRNA	48732-1_{1..3000}	"gi|221139805|ref|NR_026597.1| Homo sapiens disrupted in renal carcinoma 3 (DIRC3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|221139805|ref|NR_026597.1| Homo sapiens disrupted in renal carcinoma 3 (DIRC3), non-coding RNA"	Chr2	218148746	218151745	-	729582	NR_026597.1	NA	NA	NA	NA	NA	inter
CUST_12965_PI429285431	0.92206436	A	1.6300899	A	0.61215735909531	0	lncRNA	14592-1_{1..992}	lnc-C5orf38-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf38-2:1	chr5	  2560430	  2561421	+	lnc-C5orf38-2	lnc-C5orf38-2:1	XLOC_004254	linc-C5orf38-2	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-30.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.30"	NA	inter
CUST_49754_PI429285431	2.561808	A	2.575009	A	0.990891500083089	0	lncRNA	53523-1_{1..853}	hg19_lincRNAsTranscripts_TCONS_l2_00026553 range=chr7:45779022-45805388 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026553 range=chr7:45779022-45805388 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 45779022	 45779874	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27662_PI429285431	2.5445285	A	2.2929757	A	1.19048777021963	0	lncRNA	29240-1_{1..435}	n324869|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171051|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171051|-1.3355900|-0.3335321	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324869|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171051|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171051|-1.3355900|-0.3335321	chr21	 22504128	 22504562	+	NA	NA	NA	NA	NCAM2	NA	chr21:22494128-22725010	inner
CUST_25850_PI429285431	5.1879306	P	5.3136306	P	0.916559217991691	0	lncRNA	27371-1_{1..429}	lnc-CDYL2-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDYL2-6:2	chr16	 80574747	 80575175	-	lnc-CDYL2-6	lnc-CDYL2-6:2	ENSG00000259867.1	RP11-525K10.3	DYNLRB2	NA	chr16:80574854-80584541	inter
CUST_32786_PI429285431	4.141209	P	4.4601064	P	0.801682340535567	0	lncRNA	34421-1_{1..567}	n339428|AF147328|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1860|NULL|-1.3802400|-0.4447500	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339428|AF147328|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1860|NULL|-1.3802400|-0.4447500	chr3	112736324	112736890	+	NA	NA	NA	NA	C3orf17	"hg19_refFlat_C3orf17:range=chr3:112724383-1127384945'pad=0,hg19_refFlat_C3orf17:range=chr3:112724383-1127384945'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80chr3:112726324-112738555"	NA	inner
CUST_15682_PI429285431	0.91861135	A	0.9104552	A	1.00566942306994	0	lncRNA	17369-1_{1..533}	lnc-DDX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DDX1-1:1	chr2	 15713608	 15714140	+	lnc-DDX1-1	lnc-DDX1-1:1	XLOC_001361	linc-DDX1	DDX1	NA	chr2:15703608-15723956	inter
CUST_23821_PI429285431	5.757585	P	5.7201543	P	1.02628448502893	0	lncRNA	25384-1_{1..566}	lnc-DNASE1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DNASE1-1:1	chr16	  3667225	  3667790	+	lnc-DNASE1-1	lnc-DNASE1-1:1	ENSG00000262012.1	RP11-461A8.2	SLX4	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-16.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.52;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr16:3657225-3661585"	NA	inter
CUST_4970_PI429285431	1.9921752	A	2.947424	A	0.515752637850094	0	lncRNA	4914-1_{1..448}	"transcript_id ""ENST00000435624.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435624.1"" | genecode_v17"	chr14	 97409916	 97410363	+	ENSG00000225163.3	ENST00000435624.1	LINC00618	LINC00618-001	NA	NA	NA	inter
LNCA_21_P0013097	3.3231683	P	3.507499	P	0.880057260395381	0	lncRNA	TCONS_l2_00024927	NA	NA	NA	NA	XLOC_l2_013125	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013125), lincRNA [TCONS_l2_00024927]"	chr6:134846243-134846184	hs|6q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00024927	TCONS_l2_00024927	chr6	134846184	134846243	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30119_PI429285431	5.1590242	P	4.411522	P	1.67888358939034	0	lncRNA	31892-1_{1..292}	n334694|AJ005694|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244043|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244043|-0.0152777|-0.2116714	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334694|AJ005694|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244043|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244043|-0.0152777|-0.2116714	chr2	 54886306	 54886597	+	NA	NA	NA	NA	SPTBN1	NA	chr2:54876306-54897268	inner
CUST_45964_PI429285431	1.3368214	A	1.7447546	A	0.753702352072182	0	lncRNA	50257-1_{1..725}	"gi|310122830|ref|XR_109124.1| PREDICTED: Homo sapiens uncharacterized LOC100507560 (LOC100507560), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310122830|ref|XR_109124.1| PREDICTED: Homo sapiens uncharacterized LOC100507560 (LOC100507560), misc_RNA"	Chr12	  5132848	  5133572	+	100507560	XR_109124.1	NA	NA	NA	NA	NA	inter
CUST_22959_PI429285431	3.2621315	P	3.5386899	P	0.825558068043914	0	lncRNA	24534-2_{3001..6000}	lnc-TRIM29-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM29-2:1	chr11	120768026	120771025	-	lnc-TRIM29-2	lnc-TRIM29-2:1	ENSG00000250493.2	RP11-640N11.2	GRIK4	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80chr11:120755026-120775506"	NA	inner
CUST_4633_PI429285431	3.3950753	P	3.6818736	P	0.819719202753826	0	lncRNA	4579-1_{1..324}	"transcript_id ""ENST00000455894.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455894.1"" | genecode_v17"	chr13	 61259333	 61259656	+	ENSG00000225249.1	ENST00000455894.1	LINC00378	LINC00378-001	NA	NA	NA	inter
CUST_36728_PI429285431	1.0605513	A	0.91976815	A	1.10250343446262	0	lncRNA	37904-2_{3001..3333}	n345211|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_760|NULL|-1.3891200|-0.2832935	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345211|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_760|NULL|-1.3891200|-0.2832935	chr13	 30893496	 30893828	+	NA	NA	NA	NA	KATNAL1	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20chr13:30880496-30881584"	NA	inter
CUST_29494_PI429285431	6.02419	P	5.6237392	P	1.31992028282183	0	lncRNA	31252-1_{1..447}	n332921|AF086446|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067325|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067325|0.9955740|-0.4715359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332921|AF086446|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067325|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067325|0.9955740|-0.4715359	chr5	132334287	132334733	-	NA	NA	NA	NA	ZCCHC10	NA	chr5:132332677-132352602	inner
CUST_29618_PI429285431	3.129125	A	3.1986697	P	0.95293868843018	0	lncRNA	31379-1_{1..411}	n333177|AF422926|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079411|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079411|2.4269900|-0.2111849	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333177|AF422926|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079411|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079411|2.4269900|-0.2111849	chr2	202122769	202123179	+	NA	NA	NA	NA	CASP8	NA	chr2:202112769-202141487	inner
CUST_40837_PI429285431	1.6627489	A	1.3288758	A	1.26039252210532	0	lncRNA	41540-1_{1..2582}	n410608|NR_037859|lncRNA|Homosapiens||RefGeneNoncode|NR_037859||2.8918500|-0.1972995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410608|NR_037859|lncRNA|Homosapiens||RefGeneNoncode|NR_037859||2.8918500|-0.1972995	chrX	 15363712	 15366293	-	NA	NA	NA	NA	PIR	NA	chrX:15402921-15511711	inner
CUST_6565_PI429285431	0.91094863	A	1.0248078	A	0.924112776160554	0	lncRNA	6514-1_{1..559}	"transcript_id ""ENST00000600765.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600765.1"" | genecode_v17"	chr19	 51897742	 51898300	+	ENSG00000268889.1	ENST00000600765.1	CTD-2616J11.14	CTD-2616J11.14-001	SIGLEC10	NA	chr19:51899492-51916904	inter
CUST_29939_PI429285431	8.55104	P	8.883452	P	0.794207560582278	0	lncRNA	31703-1_{1..255}	n334127|M62611|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196021|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196021|1.3653600|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334127|M62611|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196021|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196021|1.3653600|-1.0000000	chr20	  3052375	  3052629	+	NA	NA	NA	NA	OXT	NA	chr20:3052266-3053162	inner
CUST_33087_PI429285431	0.9818586	A	1.6561675	A	0.626632325625562	0	lncRNA	34691-1_{1..1465}	n339775|BC043357|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2222|NULL|-1.2301600|-0.3193587	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339775|BC043357|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2222|NULL|-1.2301600|-0.3193587	chr18	  3653409	  3654873	+	NA	NA	NA	NA	DLGAP1	NA	chr18:3643409-3666282	inner
CUST_19686_PI429285431	4.173338	P	4.8665314	P	0.618483323211535	0	lncRNA	21343-1_{1..457}	lnc-ESRP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ESRP2-2:1	chr16	 68294213	 68294669	-	lnc-ESRP2-2	lnc-ESRP2-2:1	ENSG00000260441.1	RP11-96D1.7	PLA2G15	NA	chr16:68284213-68294961	inner
CUST_33663_PI429285431	9.583166	P	7.1620946	P	5.35568607805449	0	lncRNA	35225-1_{1..1631}	n340426|AK001058|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2887|NULL|-1.2069600|-0.3411087	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340426|AK001058|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2887|NULL|-1.2069600|-0.3411087	chr5	 33523640	 33525270	-	NA	NA	NA	NA	ADAMTS12	NA	chr5:33527286-33535271	inter
CUST_10648_PI429285431	3.9839177	P	4.313841	P	0.795578779090098	0	lncRNA	12180-1_{1..1366}	lnc-C5orf38-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf38-4:2	chr5	  3041841	  3043206	+	lnc-C5orf38-4	lnc-C5orf38-4:2	XLOC_004258	linc-IRX1-6	NA	NA	NA	inter
CUST_46700_PI429285431	4.585893	P	5.2769465	P	0.619401378972965	0	lncRNA	50859-1_{1..2413}	"gi|364502997|ref|NR_045667.1| Homo sapiens acyl-CoA synthetase family member 3 (ACSF3), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|364502997|ref|NR_045667.1| Homo sapiens acyl-CoA synthetase family member 3 (ACSF3), transcript variant 6, non-coding RNA"	Chr16	 89202956	 89205368	+	197322	NR_045667.1	NA	NA	NA	NA	NA	inter
CUST_8198_PI429285431	10.837042	P	10.599303	P	1.17914325249073	0	lncRNA	9795-1_{1..968}	lnc-TRPV2-1:33	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRPV2-1:33	chr17	 16344682	 16345649	+	lnc-TRPV2-1	lnc-TRPV2-1:33	ENSG00000175061	NCRNA00188	C17orf76	NA	chr17:16345328-16355146	inter
CUST_4306_PI429285431	0.93342024	A	0.9168337	A	1.0115632569503	0	lncRNA	4261-1_{1..559}	"transcript_id ""ENST00000538573.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000538573.1"" | genecode_v17"	chr12	 67913609	 67914167	+	ENSG00000203585.3	ENST00000538573.1	RP11-542B15.1	RP11-542B15.1-002	NA	NA	NA	inter
CUST_30917_PI429285431	4.408156	P	3.7431347	P	1.58559168277877	0	lncRNA	32705-1_{1..447}	n336967|BC105291|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338242|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338242|0.2294900|-0.0872633	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336967|BC105291|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338242|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338242|0.2294900|-0.0872633	chr5	 54603594	 54604040	+	NA	NA	NA	NA	SKIV2L2	NA	chr5:54603576-54628221	inner
CUST_19625_PI429285431	2.5080082	A	3.650586	P	0.45294952631712	0	lncRNA	21281-1_{1..455}	lnc-SRD5A3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRD5A3-2:1	chr4	 55958480	 55958934	+	lnc-SRD5A3-2	lnc-SRD5A3-2:1	ENSG00000250646.1	RP11-530I17.1	KDR	NA	chr4:55948480-55968701	inner
CUST_18890_PI429285431	3.8894136	P	4.168083	P	0.82435096700979	0	lncRNA	20583-1_{1..994}	lnc-AC018816.3.1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AC018816.3.1-3:4	chr3	  4948061	  4949054	-	lnc-AC018816.3.1-3	lnc-AC018816.3.1-3:4	ENSG00000235831	AC018816.4	NA	NA	NA	inter
CUST_41547_PI429285431	11.074418	P	10.952963	P	1.08783141917248	0	lncRNA	42830-1_{1..84}	ENST00000581887 ncrna:miRNA chromosome:GRCh37:16:2581923:2582006:-1 gene:ENSG00000266232 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581887 ncrna:miRNA chromosome:GRCh37:16:2581923:2582006:-1 gene:ENSG00000266232 gene_biotype:miRNA transcript_biotype:miRNA	chr16	  2581923	  2582006	-	ENSG00000266232	ENST00000581887	NA	NA	PDPK1	NA	chr16:2587970-2592006	inter
CUST_1064_PI429285431	6.352816	P	6.414429	P	0.958192216857859	0	lncRNA	1054-1_{1..440}	"transcript_id ""ENST00000419223.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419223.1"" | genecode_v17"	chr2	127069991	127070430	+	ENSG00000235774.1	ENST00000419223.1	AC023347.1	AC023347.1-002	NA	NA	NA	inter
CUST_9279_PI429285431	2.9997423	A	3.0441933	A	0.969658738541483	0	lncRNA	10784-1_{1..556}	lnc-WDR60-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR60-6:1	chr7	158383598	158384153	+	lnc-WDR60-6	lnc-WDR60-6:1	XLOC_006317	linc-WDR60-2	PTPRN2	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-53.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.93;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.90chr7:158373598-158380482"	NA	inter
CUST_28011_PI429285431	0.9125884	A	0.90248	A	1.00703121267383	0	lncRNA	29621-1_{1..750}	n325267|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328268|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328268|-1.2184800|-0.2802441	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325267|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328268|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328268|-1.2184800|-0.2802441	chr2	 67205305	 67206054	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_347_PI429285431	3.0695493	A	3.6520119	P	0.667822867533665	0	lncRNA	340-1_{1..554}	"transcript_id ""ENST00000446693.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446693.1"" | genecode_v17"	chr1	106470246	106470799	-	ENSG00000233047.1	ENST00000446693.1	RP11-24P14.1	RP11-24P14.1-003	NA	NA	NA	inter
CUST_46947_PI429285431	0.91146	A	1.3186117	A	0.754110739107746	0	lncRNA	51054-2_{3001..4193}	"gi|384229059|ref|NR_047566.1| Homo sapiens caspase recruitment domain family, member 14 (CARD14), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384229059|ref|NR_047566.1| Homo sapiens caspase recruitment domain family, member 14 (CARD14), transcript variant 4, non-coding RNA"	Chr17	 78146791	 78147983	+	79092	NR_047566.1	NA	NA	NA	NA	NA	inter
CUST_3013_PI429285431	2.6644847	A	2.3162272	A	1.27302213086275	0	lncRNA	2992-1_{1..1547}	"transcript_id ""ENST00000602981.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602981.1"" | genecode_v17"	chr8	 12270336	 12271882	+	ENSG00000270074.1	ENST00000602981.1	RP11-351I21.11	RP11-351I21.11-001	FAM86B2	NA	chr8:12278528-12281882	inter
CUST_41428_PI429285431	0.92301565	A	0.90996236	A	1.00908890669388	0	lncRNA	42588-1_{1..77}	ENST00000401120 ncrna:miRNA chromosome:GRCh37:9:28888877:28888953:-1 gene:ENSG00000215939 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401120 ncrna:miRNA chromosome:GRCh37:9:28888877:28888953:-1 gene:ENSG00000215939 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 28888877	 28888953	-	ENSG00000215939	ENST00000401120	NA	NA	NA	NA	NA	inner
LNCA_32_P103614	5.3901043	P	4.964346	P	1.34327836251033	0	lncRNA	XR_109015	XR_109015	XR_109015	100128511	NA	LOC100128511	uncharacterized LOC100128511	ENST00000417845	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100128511 (LOC100128511), miscRNA [XR_109015]"	chr10:21463786-21463845	hs|10p12.31	Agilent_HUMAN_G3V2	XR_109015	XR_109015	chr10	 21463786	 21463845	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50727_PI429285431	8.626936	P	7.975632	P	1.57058715149033	0	lncRNA	54395-1_{1..925}	hg19_lincRNAsTranscripts_TCONS_l2_00003230 range=chr10:107446143-107447532 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003230 range=chr10:107446143-107447532 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	107446143	107447067	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37864_PI429285431	4.307777	P	4.8063946	P	0.707784660337605	0	lncRNA	38956-2_{3001..4450}	n346399|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1949|NULL|-1.3140500|-0.2076451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346399|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1949|NULL|-1.3140500|-0.2076451	chr6	 37524902	 37526351	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
CUST_41881_PI429285431	10.69988	P	10.598316	P	1.07293598307922	0	lncRNA	43557-1_{1..101}	ENST00000408865 ncrna:miRNA chromosome:GRCh37:15:44085857:44085957:-1 gene:ENSG00000221792 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408865 ncrna:miRNA chromosome:GRCh37:15:44085857:44085957:-1 gene:ENSG00000221792 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 44085857	 44085957	-	ENSG00000221792	ENST00000408865	NA	NA	SERINC4	"hg19_refFlat_SERF2:range=chr15:44084575-440859715'pad=0,hg19_refFlat_SERF2:range=chr15:44084575-440859715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SERF2:range=chr15:44085208-440859715'pad=0,hg19_refFlat_SERF2:range=chr15:44085208-440859715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SERF2:range=chr15:44084575-440861705'pad=0,hg19_refFlat_SERF2:range=chr15:44084575-440861705'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10chr15:44087165-44092255"	NA	inter
CUST_32038_PI429285431	3.4868422	P	3.4325395	P	1.03835711126291	0	lncRNA	33753-6_{15001..16382}	n338599|D84239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1005|NULL|36.1234000|-0.1103645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338599|D84239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1005|NULL|36.1234000|-0.1103645	chr19	 40368970	 40370351	-	NA	NA	NA	NA	FCGBP	NA	chr19:40353963-40440533	inner
CUST_39693_PI429285431	2.0350456	A	1.273241	A	1.69561025863358	0	lncRNA	40633-1_{1..620}	n405467|NR_002229|lncRNA|Homosapiens||RefGeneNoncode|NR_002229||3.0421500|-0.2341175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405467|NR_002229|lncRNA|Homosapiens||RefGeneNoncode|NR_002229||3.0421500|-0.2341175	chr2	 54756358	 54756977	+	NA	NA	NA	NA	SPTBN1	"hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20chr2:54746358-54766978"	NA	inner
CUST_37803_PI429285431	11.369596	P	10.242321	P	2.1844574432009	0	lncRNA	38896-1_{1..514}	n346314|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1864|NULL|-1.2955500|-0.3631187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346314|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1864|NULL|-1.2955500|-0.3631187	chr7	 55748845	 55749358	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25759_PI429285431	10.576842	P	10.205749	P	1.29333230087668	0	lncRNA	27284-2_{3001..4063}	lnc-CKB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CKB-1:1	chr14	103994347	103995409	-	lnc-CKB-1	lnc-CKB-1:1	ENSG00000260285.1	RP11-600F24.7	TRMT61A	NA	chr14:103995509-104003410	inter
CUST_15425_PI429285431	1.9930377	A	2.4441342	A	0.731486680520489	0	lncRNA	17110-1_{1..850}	lnc-C2CD4B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2CD4B-1:1	chr15	 62478077	 62478926	-	lnc-C2CD4B-1	lnc-C2CD4B-1:1	XLOC_011492	linc-C2CD4B-7	NA	NA	NA	inter
CUST_2736_PI429285431	1.667346	A	2.5724435	A	0.53399661432529	0	lncRNA	2721-1_{1..429}	"transcript_id ""ENST00000497320.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000497320.1"" | genecode_v17"	chr7	   148328	   148756	-	ENSG00000242474.1	ENST00000497320.1	AC093627.9	AC093627.9-003	NA	NA	NA	inter
CUST_16544_PI429285431	0.92024326	A	0.9074787	A	1.00888697553101	0	lncRNA	18245-1_{1..557}	lnc-OCM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OCM-1:1	chr7	  5855829	  5856385	+	lnc-OCM-1	lnc-OCM-1:1	XLOC_005976	linc-OCM-3	NA	NA	NA	inter
LNCA_21_P0007926	0.9281271	A	0.91135424	A	1.01169390593133	0	lncRNA	ENST00000457628	NA	AB593160	NA	Hs.549877	XLOC_010320	NA	ENST00000457628	NA	NA	"BROAD Institute lincRNA (XLOC_010320), lincRNA [TCONS_00021531]"	chr13:25763779-25763838	hs|13q12.13	Agilent_HUMAN_G3V2	ENST00000457628	ENST00000457628	chr13	 25763779	 25763838	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27359_PI429285431	0.90768504	A	0.8945678	A	1.00913363732926	0	lncRNA	28922-1_{1..1165}	n324521|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040484|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040484|-1.1590500|-0.1748219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324521|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040484|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040484|-1.1590500|-0.1748219	chr6	 40454053	 40455217	+	NA	NA	NA	NA	LRFN2	NA	chr6:40444053-40465602	inner
CUST_10811_PI429285431	1.1827972	A	1.9936535	A	0.570043412835624	0	lncRNA	12346-1_{1..697}	lnc-KIAA1967-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1967-1:1	chr8	 22536560	 22537256	+	lnc-KIAA1967-1	lnc-KIAA1967-1:1	XLOC_006739	linc-RHOBTB2-2	BIN3	NA	chr8:22526560-22526661	inter
CUST_49822_PI429285431	0.9092245	A	0.8964537	A	1.00889133921715	0	lncRNA	53580-1_{1..346}	hg19_lincRNAsTranscripts_TCONS_l2_00025955 range=chr7:64551040-64601217 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025955 range=chr7:64551040-64601217 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 64551040	 64551385	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15833_PI429285431	1.1890978	A	1.0448408	A	1.10516133940855	0	lncRNA	17523-1_{1..861}	lnc-ANKFY1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKFY1-1:1	chr17	  4063213	  4064073	-	lnc-ANKFY1-1	lnc-ANKFY1-1:1	XLOC_012360	linc-ZZEF1	ANKFY1	NA	chr17:4066665-4073932	inter
CUST_39218_PI429285431	4.857124	P	5.2108226	P	0.782575256025289	0	lncRNA	40192-1_{1..3000}	n386029|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zdo.1||-1.1683300|-0.3334383	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386029|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zdo.1||-1.1683300|-0.3334383	chr12	  1011721	  1014720	+	NA	NA	NA	NA	RAD52	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40chr12:1021255-1026190"	NA	inner
CUST_40813_PI429285431	2.7761178	A	2.5970473	A	1.13215422559934	0	lncRNA	41518-2_{3001..3277}	n410581|NR_037846_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037846_4||1.2097200|-0.2990862	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410581|NR_037846_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037846_4||1.2097200|-0.2990862	chr6	  3041542	  3041818	+	NA	NA	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70"	NA	inter
CUST_25950_PI429285431	0.8993474	A	0.8919908	A	1.0051122296286	0	lncRNA	27470-1_{1..283}	lnc-TTC14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTC14-1:1	chr3	180418062	180418344	+	lnc-TTC14-1	lnc-TTC14-1:1	ENSG00000243187.1	CCDC39-AS1	NA	NA	NA	inter
CUST_32586_PI429285431	0.9702621	A	0.9224572	A	1.03369093765348	0	lncRNA	34249-1_{1..506}	n339206|AF147377|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1638|NULL|-0.7640260|-0.1340432	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339206|AF147377|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1638|NULL|-0.7640260|-0.1340432	chr16	 49933929	 49934434	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29410_PI429285431	3.8218045	P	3.9969866	P	0.885655722720324	0	lncRNA	31164-1_{1..256}	n332774|AF035326|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063257|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063257|1.0080000|-0.3646568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332774|AF035326|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063257|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063257|1.0080000|-0.3646568	chr11	108123548	108123803	+	NA	NA	NA	NA	ATM	NA	chr11:108113548-108134723	inner
CUST_40818_PI429285431	12.752552	P	13.420964	P	0.629198876593082	0	lncRNA	41522-1_{1..2112}	n410586|NR_037849|lncRNA|Homosapiens||RefGeneNoncode|NR_037849||6.9211300|-0.1175756	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410586|NR_037849|lncRNA|Homosapiens||RefGeneNoncode|NR_037849||6.9211300|-0.1175756	chr2	 74682149	 74684260	+	NA	NA	NA	NA	MOGS	NA	chr2:74688184-74692537	inner
CUST_14404_PI429285431	6.001536	P	6.064475	P	0.957311934381747	0	lncRNA	16065-1_{1..247}	lnc-PTPN1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPN1-2:1	chr20	 49013527	 49013773	+	lnc-PTPN1-2	lnc-PTPN1-2:1	XLOC_013562	linc-PTPN1-1	NA	NA	NA	inter
CUST_19933_PI429285431	5.8998885	P	6.424391	P	0.695198801447947	0	lncRNA	21588-1_{1..603}	lnc-IFIT2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IFIT2-1:4	chr10	 91043795	 91044397	+	lnc-IFIT2-1	lnc-IFIT2-1:4	ENSG00000232110.2	RP11-149I23.3	NA	NA	NA	inter
LNCA_21_P0013837	0.9241911	A	0.91005385	A	1.00984736430111	0	lncRNA	ENST00000444722	NA	NA	NA	NA	XLOC_l2_015855	NA	ENST00000444722	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015855), lincRNA [TCONS_l2_00030640]"	chrX:154581192-154564518	hs|Xq28	Agilent_HUMAN_G3V2	ENST00000444722	ENST00000444722	chrX	154564518	154581192	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28285_PI429285431	1.624844	A	1.982132	A	0.780630642576479	0	lncRNA	29921-1_{1..1468}	n325580|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256321|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256321|-0.0856653|-0.2644597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325580|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256321|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256321|-0.0856653|-0.2644597	chr17	 10638954	 10640421	-	NA	NA	NA	NA	TMEM220	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-28.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90chr17:10628954-10633646"	NA	inter
CUST_3860_PI429285431	1.4664432	A	1.3897756	A	1.05457931176256	0	lncRNA	3829-1_{1..467}	"transcript_id ""ENST00000531136.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531136.1"" | genecode_v17"	chr11	 13076162	 13076628	-	ENSG00000255558.1	ENST00000531136.1	CTC-497E21.5	CTC-497E21.5-001	NA	NA	NA	inter
LNCA_21_P0012434	5.5755835	P	5.9541574	P	0.769197564600452	0	lncRNA	TCONS_l2_00019174	NA	NA	NA	NA	XLOC_l2_010113	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010113), lincRNA [TCONS_l2_00019174]"	chr3:12833678-12818163	hs|3p25.2	Agilent_HUMAN_G3V2	TCONS_l2_00019174	TCONS_l2_00019174	chr3	 12818163	 12833678	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32028_PI429285431	1.3364275	A	0.8997422	A	1.35349100523026	0	lncRNA	33748-1_{1..2570}	n338592|AK000933|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|998|NULL|-1.2778100|-0.4181474	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338592|AK000933|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|998|NULL|-1.2778100|-0.4181474	chr1	241792154	241794723	-	NA	NA	NA	NA	CHML	NA	chr1:241792166-241799232	inner
CUST_47692_PI429285431	0.92762256	A	0.919397	A	1.00571780834325	0	lncRNA	51665-2_{3001..5659}	"gi|385137101|ref|NR_047639.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 69, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137101|ref|NR_047639.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 69, non-coding RNA"	ChrY	 15363259	 15365917	-	7404	NR_047639.1	NA	NA	NA	NA	NA	inter
CUST_36397_PI429285431	1.4389665	A	1.4328344	A	1.0042594937912	0	lncRNA	37615-1_{1..1424}	n344914|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_463|NULL|-1.2747400|-0.4568157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344914|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_463|NULL|-1.2747400|-0.4568157	chr6	 83108547	 83109970	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6829_PI429285431	0.9271858	A	0.91769147	A	1.00660267022212	0	lncRNA	6777-1_{1..1046}	"transcript_id ""ENST00000419694.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419694.1"" | genecode_v17"	chr21	 26887785	 26888830	-	ENSG00000229962.1	ENST00000419694.1	AP000221.1	AP000221.1-001	NA	NA	NA	inter
CUST_49479_PI429285431	1.2698292	A	1.7628359	A	0.710542721761433	0	lncRNA	53273-1_{1..1000}	hg19_lincRNAsTranscripts_TCONS_l2_00024562 range=chr6:1528634-1555481 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024562 range=chr6:1528634-1555481 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	  1528634	  1529633	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19147_PI429285431	15.370387	P	16.584618	P	0.431002756115852	0	lncRNA	20821-1_{1..119}	lnc-BSPH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,"	>lnc-BSPH1-1:1	NA	NA	      118	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23973_PI429285431	4.1007485	P	4.014068	P	1.06192398620991	0	lncRNA	25528-1_{1..457}	lnc-FBXO7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXO7-2:1	chr22	 32979863	 32980319	+	lnc-FBXO7-2	lnc-FBXO7-2:1	ENSG00000236054.1	LL22NC03-104C7.1	SYN3	NA	chr22:32969863-32990190	inner
CUST_46408_PI429285431	2.1467264	A	4.044019	P	0.268446667408914	0	lncRNA	50622-1_{1..2198}	"gi|310123172|ref|XR_110256.1| PREDICTED: Homo sapiens uncharacterized LOC100288144 (LOC100288144), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123172|ref|XR_110256.1| PREDICTED: Homo sapiens uncharacterized LOC100288144 (LOC100288144), misc_RNA"	Chr14	105057201	105059398	-	100288144	XR_110256.2	NA	NA	NA	NA	NA	inter
CUST_33493_PI429285431	0.9140346	A	0.9061152	A	1.00550440364833	0	lncRNA	35065-1_{1..2322}	n340232|CR615110|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2693|NULL|-1.1561000|-0.3200539	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340232|CR615110|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2693|NULL|-1.1561000|-0.3200539	chr4	140372571	140374892	-	NA	NA	NA	NA	RAB33B	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00chr4:140374961-140384893"	NA	inter
CUST_48946_PI429285431	1.1152062	A	0.8962912	A	1.16385796076862	0	lncRNA	52788-1_{1..1029}	hg19_lincRNAsTranscripts_TCONS_l2_00018981 range=chr3:165178249-165257047 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018981 range=chr3:165178249-165257047 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	165178249	165179277	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35477_PI429285431	3.5792794	P	1.8690777	A	3.27206566251133	0	lncRNA	36886-1_{1..2724}	n342576|BC040874|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5075|NULL|-0.8681600|-0.3065858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342576|BC040874|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5075|NULL|-0.8681600|-0.3065858	chr4	 10452510	 10455233	-	NA	NA	NA	NA	ZNF518B	NA	chr4:10442510-10459032	inner
CUST_45889_PI429285431	1.1790726	A	0.9231543	A	1.19409556337924	0	lncRNA	50207-2_{3001..6000}	"gi|403048748|ref|NR_073143.1| Homo sapiens progesterone receptor (PGR), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|403048748|ref|NR_073143.1| Homo sapiens progesterone receptor (PGR), transcript variant 6, non-coding RNA"	Chr11	100903355	100906354	-	5241	NR_073143.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0012844	0.93023217	A	0.9222616	A	1.0055400678541	0	lncRNA	BC045192	NA	BC045192	NA	Hs.434420	LOC728342	uncharacterized LOC728342	NA	THC2610933	NA	"BROAD Institute lincRNA (XLOC_l2_011728), lincRNA [TCONS_l2_00022491]"	chr5:116891386-116891445	hs|5q23.1	Agilent_HUMAN_G3V2	BC045192	BC045192	chr5	116891386	116891445	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3029_PI429285431	0.8852736	A	0.9031189	A	0.987706767434246	0	lncRNA	3008-1_{1..764}	"transcript_id ""ENST00000517706.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517706.1"" | genecode_v17"	chr8	 20513202	 20513965	-	ENSG00000253300.1	ENST00000517706.1	RP11-108E14.1	RP11-108E14.1-002	NA	NA	NA	inter
LNCA_19_P00320371	4.7145166	P	4.715788	P	0.99911912087664	0	lncRNA	XR_132650	XR_132650	XR_132650	NA	NA	LOC100506694	uncharacterized LOC100506694	NA	THC2497772	NA	"PREDICTED: Homo sapiens hypothetical LOC100506694, transcript variant 3 (LOC100506694), miscRNA [XR_132650]"	chr19:28296641-28296700	hs|19q11	Agilent_HUMAN_G3V2	XR_132650	XR_132650	chr19	 28296641	 28296700	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18511_PI429285431	0.9121071	A	0.91389513	A	0.998761399746018	0	lncRNA	20225-1_{1..525}	lnc-MFAP4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MFAP4-2:1	chr17	 19361408	 19361932	-	lnc-MFAP4-2	lnc-MFAP4-2:1	ENSG00000231477	AC004448.7	NA	NA	NA	inter
CUST_47894_PI429285431	4.4646235	P	4.680645	P	0.860936357997704	0	lncRNA	51787-2_{3001..3468}	"gi|410171792|ref|XR_171381.1| PREDICTED: Homo sapiens PRKAR2A antisense RNA 1 (PRKAR2A-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410171792|ref|XR_171381.1| PREDICTED: Homo sapiens PRKAR2A antisense RNA 1 (PRKAR2A-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_171381.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40"	NA	Unknown
CUST_48926_PI429285431	1.7341346	A	1.1360856	A	1.51366820264403	0	lncRNA	52768-3_{6001..7273}	hg19_lincRNAsTranscripts_TCONS_l2_00018865 range=chr3:131080924-131089110 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018865 range=chr3:131080924-131089110 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	131086924	131088196	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40"	NA	inter
CUST_10106_PI429285431	0.9364389	A	1.2476349	A	0.805973327059378	0	lncRNA	11630-1_{1..331}	lnc-RPRM-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPRM-4:1	chr2	155345296	155345626	-	lnc-RPRM-4	lnc-RPRM-4:1	XLOC_002360	linc-RPRM-2	NA	NA	NA	inter
CUST_51955_PI429285431	2.9984913	A	3.2747416	P	0.825734391934468	0	lncRNA	55498-1_{1..440}	hg19_lincRNAsTranscripts_TCONS_l2_00016222 range=chr20:25990428-26031391 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016222 range=chr20:25990428-26031391 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 25990428	 25990867	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41192_PI429285431	2.6707742	A	2.9457061	P	0.826489330276263	0	lncRNA	42056-1_{1..60}	ENST00000580821 ncrna:miRNA chromosome:GRCh37:1:37966536:37966595:-1 gene:ENSG00000263675 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580821 ncrna:miRNA chromosome:GRCh37:1:37966536:37966595:-1 gene:ENSG00000263675 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 37966536	 37966595	-	ENSG00000263675	ENST00000580821	NA	NA	MEAF6	NA	chr1:37958176-37976595	inter
CUST_40426_PI429285431	5.4953876	P	3.430659	P	4.18355267460427	0	lncRNA	41209-1_{1..3000}	n409301|NR_033652|lncRNA|Homosapiens||RefGeneNoncode|NR_033652||-0.8071330|-0.3030733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409301|NR_033652|lncRNA|Homosapiens||RefGeneNoncode|NR_033652||-0.8071330|-0.3030733	chr8	 72755357	 72758356	+	NA	NA	NA	NA	TRPA1	"hg19_refFlat_TRPA1:range=chr8:72935141-729876445'pad=0,hg19_refFlat_TRPA1:range=chr8:72935141-729876445'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MSC:range=chr8:72754896-727564135'pad=0,hg19_refFlat_MSC:range=chr8:72754896-727564135'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50chr8:72933486-72978547"	NA	inter
CUST_32847_PI429285431	5.8239164	P	6.4358873	P	0.654302233251877	0	lncRNA	34481-1_{1..919}	n339509|AJ011409|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1950|NULL|1.0244800|-0.1748276	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339509|AJ011409|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1950|NULL|1.0244800|-0.1748276	chr21	 40394925	 40395843	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8172_PI429285431	3.6714234	P	4.2367096	P	0.675821334641613	0	lncRNA	9773-2_{3001..3692}	lnc-KIAA0141-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA0141-1:1	chr5	141233405	141234096	+	lnc-KIAA0141-1	lnc-KIAA0141-1:1	ENSG00000246581	XLOC_004581	PCDH1	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30chr5:141232672-141241803"	NA	inter
CUST_27585_PI429285431	1.8840601	A	2.1815333	A	0.813676257725571	0	lncRNA	29163-1_{1..1542}	n324787|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000195003|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000195003|-1.2958100|-0.2377088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324787|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000195003|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000195003|-1.2958100|-0.2377088	chr21	 40021551	 40023092	+	NA	NA	NA	NA	ERG	NA	chr21:40011551-40033704	inner
CUST_4_PI429285431	0.9088272	A	0.9049927	A	1.00266140813935	0	lncRNA	4-1_{1..3000}	"transcript_id ""ENST00000407635.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000407635.2"" | genecode_v17"	chr2	241625751	241628750	+	ENSG00000219159.3	ENST00000407635.2	AC011298.2	AC011298.2-001	AQP12B	NA	chr2:241615751-241622317	inter
CUST_48899_PI429285431	5.879363	P	6.1727805	P	0.815966880183675	0	lncRNA	52739-1_{1..1377}	hg19_lincRNAsTranscripts_TCONS_l2_00018728 range=chr3:107148564-107152046 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018728 range=chr3:107148564-107152046 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	107148564	107149940	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_315_PI429201921	4.854214	P	5.0732045	P	0.859166412451934	0	lncRNA	213-2_{3001..6000}	TC16001572.hg.1	TCONS_l2_00009765-XLOC_l2_005236 // Broad TUCP // linc-GNAO1-2 chr16:+:55819980-55827371 // chr16 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr16:+:55819980-55827371	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00009765-XLOC_l2_005236	linc-GNAO1-2	chr16	 55819980	 55827371	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25933_PI429285431	5.9615426	P	5.2314467	P	1.65874934970228	0	lncRNA	27452-1_{1..720}	lnc-HIF1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HIF1A-1:1	chr14	 62242813	 62243532	+	lnc-HIF1A-1	lnc-HIF1A-1:1	ENSG00000258964.1	RP11-618G20.1	SNAPC1	NA	chr14:62232813-62252978	inner
CUST_36501_PI429285431	0.90570694	A	1.1316813	A	0.855017373376829	0	lncRNA	37700-1_{1..453}	n345001|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_550|NULL|-1.3441400|-0.4168048	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345001|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_550|NULL|-1.3441400|-0.4168048	chr8	 55357993	 55358445	-	NA	NA	NA	NA	NA	"hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70"	NA	inter
CUST_218_PI429201921	0.9107003	A	0.91026545	A	1.00030146048155	0	lncRNA	172-1_{1..3000}	TC07002292.hg.1	TCONS_l2_00025845-XLOC_l2_013381 // Broad TUCP // linc-IGFBP1-3 chr7:+:45808704-45814375 // chr7 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00025846-XLOC_l2_013381 // Broad TUCP // linc-IGFBP1-3 chr7:+:45808732-45813411 // chr7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr7:+:45808704-45814375	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00025845-XLOC_l2_013381	linc-IGFBP1-3	chr7	 45808704	 45814375	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18810_PI429285431	0.90700394	A	0.91070217	A	0.997439865051965	0	lncRNA	20505-1_{1..511}	lnc-GLUD1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-GLUD1-5:1	chr10	 89184521	 89185031	-	lnc-GLUD1-5	lnc-GLUD1-5:1	ENSG00000228055	RP11-399L7.2	NA	NA	NA	inter
CUST_21979_PI429285431	1.203152	A	2.3786578	A	0.442728514447085	0	lncRNA	23587-1_{1..535}	lnc-OR4N4-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR4N4-1:8	chr15	 22413453	 22413987	+	lnc-OR4N4-1	lnc-OR4N4-1:8	ENSG00000259176.1	RP11-69H14.6	NA	NA	NA	inter
CUST_11011_PI429285431	3.8848526	P	3.7344398	P	1.10988699988883	0	lncRNA	12556-1_{1..447}	lnc-ETS2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ETS2-4:1	chr21	 40386548	 40386994	+	lnc-ETS2-4	lnc-ETS2-4:1	XLOC_013940	linc-WRB-4	NA	NA	NA	inter
CUST_48957_PI429285431	1.9137015	A	2.3962798	A	0.715697427917076	0	lncRNA	52796-1_{1..716}	hg19_lincRNAsTranscripts_TCONS_l2_00020003 range=chr3:183602712-183605782 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020003 range=chr3:183602712-183605782 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	183602712	183603427	+	NA	NA	NA	NA	PARL	NA	chr3:183592712-183602693	inter
CUST_45260_PI429285431	2.9415004	A	1.8027798	A	2.20185673160809	0	lncRNA	49712-2_{3001..5070}	"gi|323510647|ref|NR_037873.1| Homo sapiens zinc fingers and homeoboxes 1 (ZHX1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|323510647|ref|NR_037873.1| Homo sapiens zinc fingers and homeoboxes 1 (ZHX1), transcript variant 3, non-coding RNA"	Chr8	124263690	124265759	-	11244	NR_037873.1	NA	NA	NA	NA	NA	inter
CUST_18893_PI429285431	1.266078	A	0.92606115	A	1.26577137749871	0	lncRNA	20585-1_{1..790}	lnc-RP11-88J22.1.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-88J22.1.1-3:2	chr8	 94432995	 94433784	-	lnc-RP11-88J22.1.1-3	lnc-RP11-88J22.1.1-3:2	ENSG00000246662	RP11-163D8.1	NA	NA	NA	inter
CUST_5418_PI429285431	0.9364222	A	0.91452366	A	1.01529469601999	0	lncRNA	5352-1_{1..214}	"transcript_id ""ENST00000562516.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562516.1"" | genecode_v17"	chr16	  8576551	  8576764	-	ENSG00000261066.1	ENST00000562516.1	RP11-483K5.3	RP11-483K5.3-001	TMEM114	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.00chr16:8566551-8592015"	NA	inter
CUST_17751_PI429285431	3.4263148	P	3.792347	P	0.775913536204178	0	lncRNA	19482-1_{1..406}	lnc-ZNF266-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF266-1:1	chr19	  9517526	  9517931	-	lnc-ZNF266-1	lnc-ZNF266-1:1	XLOC_013216	linc-ZNF699	ZNF266	NA	chr19:9523271-9527851	inter
CUST_5276_PI429285431	1.4679648	A	0.9165683	A	1.46550358780751	0	lncRNA	5216-1_{1..546}	"transcript_id ""ENST00000558110.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558110.1"" | genecode_v17"	chr15	 84839930	 84840475	-	ENSG00000259694.1	ENST00000558110.1	RP13-262C2.3	RP13-262C2.3-001	LOC100505679	NA	chr15:84841248-84850985	inner
CUST_19855_PI429285431	1.5255482	A	1.8036013	A	0.824703193930632	0	lncRNA	21512-1_{1..565}	lnc-MED12L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MED12L-2:1	chr3	150756332	150756896	+	lnc-MED12L-2	lnc-MED12L-2:1	ENSG00000243273.1	RP11-166N6.2	NA	NA	NA	inter
CUST_21619_PI429285431	0.9054787	A	0.8996009	A	1.00408249125393	0	lncRNA	23232-1_{1..463}	lnc-MEIS2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MEIS2-4:1	chr15	 37782940	 37783402	-	lnc-MEIS2-4	lnc-MEIS2-4:1	ENSG00000259434.1	RP11-720L8.1	NA	"hg19_refFlat_RPS15:range=chr19:1438425-14404615'pad=0,hg19_refFlat_RPS15:range=chr19:1438425-14404615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90"	NA	inter
CUST_49715_PI429285431	1.6382775	A	0.9150167	A	1.65090922951076	0	lncRNA	53491-1_{1..974}	hg19_lincRNAsTranscripts_TCONS_l2_00026432 range=chr7:25694851-25702679 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026432 range=chr7:25694851-25702679 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 25694851	 25695824	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48048_PI429285431	1.3929853	A	3.3136077	P	0.264140531420156	0	lncRNA	51927-1_{1..2257}	"gi|310113740|ref|XR_112069.1| PREDICTED: Homo sapiens NEXN antisense RNA 1 (NEXN-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310113740|ref|XR_112069.1| PREDICTED: Homo sapiens NEXN antisense RNA 1 (NEXN-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_112069.1	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80"	NA	Unknown
CUST_17106_PI429285431	0.91839695	A	0.9632448	A	0.96939204590127	0	lncRNA	18816-1_{1..398}	lnc-TNFAIP3-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFAIP3-6:1	chr6	137739382	137739779	+	lnc-TNFAIP3-6	lnc-TNFAIP3-6:1	XLOC_005475	linc-TNFAIP3-5	NA	NA	NA	inter
CUST_32777_PI429285431	2.1478572	A	3.6265	P	0.358826215216539	0	lncRNA	34411-1_{1..1686}	n339416|AK097806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1848|NULL|-0.9318720|-0.2974206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339416|AK097806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1848|NULL|-0.9318720|-0.2974206	chr3	108106442	108108127	+	NA	NA	NA	NA	MYH15	"hg19_refFlat_MYH15:range=chr3:108100392-1082481125'pad=0,hg19_refFlat_MYH15:range=chr3:108100392-1082481125'pad=0 3'pad=0 strand=- repeatMasking=none,-97.40chr3:108099216-108118128"	NA	inner
CUST_49626_PI429285431	2.1316106	A	2.6689558	A	0.689037687677833	0	lncRNA	53410-1_{1..832}	hg19_lincRNAsTranscripts_TCONS_l2_00025690 range=chr7:17029683-17061246 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025690 range=chr7:17029683-17061246 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 17029683	 17030514	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002869	1.0447637	A	1.0046088	A	1.02822421961994	0	lncRNA	ENST00000466155	NA	NA	NA	NA	XLOC_003208	NA	ENST00000466155	NA	NA	"BROAD Institute lincRNA (XLOC_003208), lincRNA [TCONS_00005807]"	chr3:107573526-107572868	hs|3q13.12	Agilent_HUMAN_G3V2	ENST00000466155	ENST00000466155	chr3	107572868	107573526	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46305_PI429285431	6.068795	P	6.0144997	P	1.03835178524272	0	lncRNA	50536-1_{1..2903}	"gi|338221686|ref|NR_039996.1| Homo sapiens long intergenic non-protein coding RNA 648 (LINC00648), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|338221686|ref|NR_039996.1| Homo sapiens long intergenic non-protein coding RNA 648 (LINC00648), non-coding RNA"	Chr14	 48234156	 48237058	-	100506433	NR_039996.1	NA	NA	NA	NA	NA	inter
CUST_4573_PI429285431	0.98539346	A	0.9373979	A	1.0338275545628	0	lncRNA	4522-1_{1..430}	"transcript_id ""ENST00000412722.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000412722.1"" | genecode_v17"	chr13	 30890497	 30890926	-	ENSG00000236463.1	ENST00000412722.1	LINC00427	LINC00427-001	KATNAL1	NA	chr13:30880497-30881584	inter
CUST_49300_PI429285431	1.4065635	A	1.002906	A	1.32285735244284	0	lncRNA	53117-1_{1..1607}	hg19_lincRNAsTranscripts_TCONS_l2_00022782 range=chr5:7301323-7307305 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022782 range=chr5:7301323-7307305 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	  7301323	  7302929	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20"	NA	inter
CUST_13844_PI429285431	3.2426052	P	2.7703326	A	1.3872930760601	0	lncRNA	15487-1_{1..921}	lnc-RP3-368B9.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP3-368B9.1.1-1:2	chr4	  3591991	  3592911	+	lnc-RP3-368B9.1.1-1	lnc-RP3-368B9.1.1-1:2	XLOC_003428	linc-ADRA2C-4	NA	NA	NA	inter
CUST_22961_PI429285431	2.9700856	A	3.0996017	A	0.914138013428864	0	lncRNA	24535-1_{1..622}	lnc-C1orf86-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf86-1:1	chr1	  2115430	  2116051	-	lnc-C1orf86-1	lnc-C1orf86-1:1	ENSG00000182873.4	RP11-181G12.2	PRKCZ	NA	chr1:2105430-2116834	inner
CUST_46417_PI429285431	1.759634	A	1.6860777	A	1.05230746840248	0	lncRNA	50630-1_{1..1680}	"gi|211971009|ref|NR_015416.1| Homo sapiens uncharacterized LOC727924 (LOC727924), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|211971009|ref|NR_015416.1| Homo sapiens uncharacterized LOC727924 (LOC727924), non-coding RNA"	NA	NA	NA	NA	NA	NR_015416.1	NA	NA	NA	NA	NA	Unknown
CUST_166_PI429201921	0.9206797	A	1.4127095	A	0.711024018382002	0	lncRNA	141-2_{3001..4207}	TC0Y000247.hg.1	TCONS_l2_00030979-XLOC_l2_015876 // Broad TUCP // linc-TSPY4-1 chrY:+:8777988-8782196 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:+:8777988-8782196	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00030979-XLOC_l2_015876	linc-TSPY4-1	chrY	  8777988	  8782196	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15091_PI429285431	0.9248071	A	1.1536055	A	0.853345334953741	0	lncRNA	16754-1_{1..253}	lnc-KIF20B-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIF20B-5:1	chr10	 91965517	 91965769	+	lnc-KIF20B-5	lnc-KIF20B-5:1	XLOC_008555	linc-RPP30-4	NA	NA	NA	inter
CUST_21448_PI429285431	0.9171167	A	0.9048696	A	1.00852517693476	0	lncRNA	23067-1_{1..754}	lnc-TM4SF4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TM4SF4-1:1	chr3	149104155	149104908	+	lnc-TM4SF4-1	lnc-TM4SF4-1:1	ENSG00000240541.2	TM4SF1-AS1	TM4SF1	NA	chr3:149094155-149095568	inter
CUST_10709_PI429285431	3.5976493	P	3.878739	P	0.822969175330879	0	lncRNA	12245-1_{1..398}	lnc-GJD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GJD4-1:1	chr10	 36315120	 36315517	+	lnc-GJD4-1	lnc-GJD4-1:1	XLOC_008450	linc-ANKRD30A-3	NA	NA	NA	inter
CUST_17862_PI429285431	1.4127952	A	1.4859576	A	0.950552094312528	0	lncRNA	19599-1_{1..2751}	lnc-PSMG1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PSMG1-3:2	chr21	 40450237	 40452987	-	lnc-PSMG1-3	lnc-PSMG1-3:2	XLOC_014082	linc-ERG-9	NA	"hg19_refFlat_SYCP2L:range=chr6:10887360-109640395'pad=0,hg19_refFlat_SYCP2L:range=chr6:10887360-109640395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70"	NA	inter
CUST_36462_PI429285431	3.9432876	P	4.2112346	P	0.830500533462953	0	lncRNA	37671-2_{3001..6000}	n344971|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_520|NULL|-1.3089600|-0.3202065	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344971|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_520|NULL|-1.3089600|-0.3202065	chr7	126989883	126992882	-	NA	NA	NA	NA	ZNF800	NA	chr7:127010353-127019008	inter
CUST_21203_PI429285431	0.9484304	A	1.1334903	A	0.879612554076642	0	lncRNA	22828-1_{1..376}	lnc-AL445989.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AL445989.1-5:1	chr13	 62902889	 62903264	+	lnc-AL445989.1-5	lnc-AL445989.1-5:1	ENSG00000229307.1	LINC00459	NA	NA	NA	inter
CUST_32309_PI429285431	2.7978709	A	2.995185	A	0.872172797791603	0	lncRNA	33992-1_{1..2449}	n338886|AK125271|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1312|NULL|-1.0543500|-0.1328582	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n338886|AK125271|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1312|NULL|-1.0543500|-0.1328582	chr2	 74729743	 74732191	+	NA	NA	NA	NA	TTC31	"hg19_refFlat_LBX2:range=chr2:74725054-747299865'pad=0,hg19_refFlat_LBX2:range=chr2:74725054-747299865'pad=0 3'pad=0 strand=- repeatMasking=none,-107.70chr2:74719743-74721691"	NA	inner
CUST_4774_PI429285431	2.7880008	A	3.3841996	P	0.661494561271166	0	lncRNA	4720-1_{1..3000}	"transcript_id ""ENST00000553932.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000553932.1"" | genecode_v17"	chr14	 39218545	 39221544	-	ENSG00000259070.1	ENST00000553932.1	LINC00639	LINC00639-001	NA	"hg19_refFlat_ZFP41:range=chr8:144332014-1443326105'pad=0,hg19_refFlat_ZFP41:range=chr8:144332014-1443326105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80"	NA	inter
CUST_6209_PI429285431	0.91126597	A	1.0296535	A	0.921216700035894	0	lncRNA	6135-1_{1..522}	"transcript_id ""ENST00000590942.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590942.1"" | genecode_v17"	chr18	 54803553	 54804074	-	ENSG00000267789.1	ENST00000590942.1	CTD-2526M8.3	CTD-2526M8.3-001	NA	NA	NA	inter
CUST_18240_PI429285431	8.115773	P	8.499552	P	0.766427376693466	0	lncRNA	19974-1_{1..499}	lnc-SMUG1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SMUG1-3:4	chr12	 54519544	 54520042	-	lnc-SMUG1-3	lnc-SMUG1-3:4	ENSG00000250432	RP11-834C11.5	NA	NA	NA	inter
CUST_25273_PI429285431	0.9686619	A	0.92484677	A	1.03083621679361	0	lncRNA	26803-1_{1..1053}	lnc-GLDN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLDN-2:1	chr15	 51752495	 51753547	+	lnc-GLDN-2	lnc-GLDN-2:1	ENSG00000259668.1	RP11-707P17.2	DMXL2	"hg19_refFlat_DMXL2:range=chr15:51741181-519147425'pad=0,hg19_refFlat_DMXL2:range=chr15:51741181-519147425'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50chr15:51742495-51762779"	NA	inner
CUST_28143_PI429285431	2.004692	A	2.8108659	A	0.571896547012536	0	lncRNA	29769-1_{1..467}	n325420|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323666|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323666|-1.2413100|-0.3912925	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325420|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323666|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323666|-1.2413100|-0.3912925	chr2	 14944221	 14944687	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16789_PI429285431	0.9095646	A	1.11177	A	0.869220798202073	0	lncRNA	18497-1_{1..522}	lnc-C14orf166B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf166B-2:1	chr14	 77394353	 77394874	+	lnc-C14orf166B-2	lnc-C14orf166B-2:1	XLOC_010880	linc-KIAA1737-3	NA	NA	NA	inter
LNCA_19_P00315528	0.9876449	A	1.9054289	A	0.529321441400802	0	lncRNA	AF088007	NA	AF088007	NA	Hs.46689	XLOC_008370	NA	NA	THC2700724	NA	"BROAD Institute lincRNA (XLOC_008370), lincRNA [TCONS_00018105]"	chr10:6628816-6628875	hs|10p14	Agilent_HUMAN_G3V2	AF088007	AF088007	chr10	  6628816	  6628875	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26387_PI429285431	3.84679	P	4.2489777	P	0.756709939297659	0	lncRNA	27893-1_{1..723}	lnc-SERTAD2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SERTAD2-4:1	chr2	 64680827	 64681549	-	lnc-SERTAD2-4	lnc-SERTAD2-4:1	ENSG00000223935.1	AC008074.3	HSPC159	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40chr2:64681327-64688517"	NA	inter
CUST_2080_PI429285431	0.9124942	A	0.9029013	A	1.00667144720687	0	lncRNA	2071-1_{1..389}	"transcript_id ""ENST00000504182.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504182.1"" | genecode_v17"	chr5	  9621489	  9621877	-	ENSG00000248525.1	ENST00000504182.1	CTD-2001E22.1	CTD-2001E22.1-001	TAS2R1	NA	chr5:9629109-9630463	inter
CUST_24554_PI429285431	0.92297983	A	0.9151333	A	1.00545361727048	0	lncRNA	26103-2_{3001..3827}	lnc-FAM211A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM211A-2:1	chr17	 16331356	 16332182	-	lnc-FAM211A-2	lnc-FAM211A-2:1	ENSG00000264087.1	RP11-138I1.1	TRPV2	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_TRPV2:range=chr17:16320983-163402035'pad=0,hg19_refFlat_TRPV2:range=chr17:16320983-163402035'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-55.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10chr17:16318856-16340317"	NA	inner
CUST_7728_PI429285431	1.4446232	A	1.1179003	A	1.25416129326692	0	lncRNA	9359-1_{1..495}	lnc-ZNF572-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF572-1:6	chr8	125966182	125966676	+	lnc-ZNF572-1	lnc-ZNF572-1:6	ENSG00000249816	ENSG00000249816.2	NA	NA	NA	inter
CUST_15865_PI429285431	0.91570646	A	0.90694994	A	1.00608801423473	0	lncRNA	17554-1_{1..1725}	lnc-MRPL39-13:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MRPL39-13:1	chr21	 24757009	 24758733	-	lnc-MRPL39-13	lnc-MRPL39-13:1	XLOC_014026	linc-TMPRSS15-23	NA	NA	NA	inter
CUST_9517_PI429285431	10.957802	P	11.286498	P	0.79625586554502	0	lncRNA	11025-1_{1..337}	lnc-RSPH1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RSPH1-4:1	chr21	 44072621	 44072957	-	lnc-RSPH1-4	lnc-RSPH1-4:1	XLOC_014094	linc-RSPH1-2	PDE9A	NA	chr21:44073862-44082723	inter
CUST_18380_PI429285431	0.9232502	A	0.91820276	A	1.00350474611544	0	lncRNA	20107-1_{1..541}	lnc-C14orf101-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C14orf101-4:4	chr14	 57395598	 57396138	+	lnc-C14orf101-4	lnc-C14orf101-4:4	ENSG00000248550	RP11-1077A2.1	NA	NA	NA	inter
CUST_29225_PI429285431	0.91926616	A	0.91147447	A	1.00541539850154	0	lncRNA	30975-1_{1..1317}	n326749|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006889|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006889|-1.1199200|-0.2850853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326749|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006889|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006889|-1.1199200|-0.2850853	chr1	   690099	   691415	-	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60"	NA	inter
CUST_12549_PI429285431	0.9112314	A	0.90563	A	1.00389014165187	0	lncRNA	14160-1_{1..945}	lnc-PI3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PI3-1:3	chr20	 43819187	 43820131	+	lnc-PI3-1	lnc-PI3-1:3	XLOC_013531	linc-SEMG1	NA	NA	NA	inter
CUST_2495_PI429285431	0.9021856	A	0.8996485	A	1.00176013092697	0	lncRNA	2487-1_{1..555}	"transcript_id ""ENST00000453179.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453179.1"" | genecode_v17"	chr6	 24742530	 24743084	+	ENSG00000224164.1	ENST00000453179.1	RP3-369A17.4	RP3-369A17.4-001	NA	NA	NA	inter
CUST_4093_PI429285431	1.1155136	A	1.158757	A	0.970470725877002	0	lncRNA	4054-1_{1..583}	"transcript_id ""ENST00000444123.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444123.1"" | genecode_v17"	chr11	116510139	116510721	+	ENSG00000237937.1	ENST00000444123.1	AP000770.1	AP000770.1-001	NA	NA	NA	inter
LNCA_21_P0008863	2.0261521	A	2.3380275	A	0.805593864075729	0	lncRNA	TCONS_00024186	NA	NA	NA	NA	XLOC_011546	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011546), lincRNA [TCONS_00024186]"	chr15:80695890-80690336	hs|15q25.1	Agilent_HUMAN_G3V2	TCONS_00024186	TCONS_00024186	chr15	 80690336	 80695890	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41043_PI429285431	6.801618	P	6.744437	P	1.04043079040615	0	lncRNA	41703-1_{1..616}	n411710|NR_044996_6|lncRNA|Homosapiens||RefGeneNoncode|NR_044996_6||-0.6850070|-0.2594507	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411710|NR_044996_6|lncRNA|Homosapiens||RefGeneNoncode|NR_044996_6||-0.6850070|-0.2594507	chr6	  3705728	  3706343	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21472_PI429285431	12.394871	P	12.216646	P	1.13149091427686	0	lncRNA	23091-1_{1..3000}	lnc-PPIAL4G-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PPIAL4G-9:1	chr1	142712961	142715960	-	lnc-PPIAL4G-9	lnc-PPIAL4G-9:1	ENSG00000203849.5	AL583842.6	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF717:range=chr3:75786029-758325135'pad=0,hg19_refFlat_ZNF717:range=chr3:75786029-758325135'pad=0 3'pad=0 strand=- repeatMasking=none,-61.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60"	NA	inter
CUST_4243_PI429285431	4.0019736	P	4.8061132	P	0.572703529598616	0	lncRNA	4200-1_{1..532}	"transcript_id ""ENST00000553045.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553045.1"" | genecode_v17"	chr12	 48112941	 48113472	+	ENSG00000257433.1	ENST00000553045.1	RP1-197B17.3	RP1-197B17.3-004	RAPGEF3	NA	chr12:48128453-48132986	inner
CUST_37145_PI429285431	1.6318005	A	0.9151113	A	1.64340629719681	0	lncRNA	38264-1_{1..2147}	n345582|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1131|NULL|-1.5704700|-0.2269628	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345582|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1131|NULL|-1.5704700|-0.2269628	chr3	  8854086	  8856232	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_52079_PI429285431	3.5660245	P	1.3448787	A	4.66263597872546	0	lncRNA	55608-1_{1..202}	hg19_lincRNAsTranscripts_TCONS_l2_00017542 range=chr22:17054312-17055470 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017542 range=chr22:17054312-17055470 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17054312	 17054513	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24798_PI429285431	3.5810971	P	3.634407	P	0.963722771771446	0	lncRNA	26341-1_{1..565}	lnc-C2orf42-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:8	chr2	 70314205	 70314769	-	lnc-C2orf42-3	lnc-C2orf42-3:8	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_27940_PI429285431	5.568909	P	5.746208	P	0.884357132431108	0	lncRNA	29541-1_{1..388}	n325184|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330878|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330878|-1.2384800|-0.3996563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325184|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330878|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330878|-1.2384800|-0.3996563	chr2	108032087	108032474	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005543	5.771493	P	6.0963693	P	0.798366837235886	0	lncRNA	TCONS_00014010	NA	NA	NA	NA	XLOC_006657	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006657), lincRNA [TCONS_00014010]"	chr7:153120862-153120803	hs|7q36.2	Agilent_HUMAN_G3V2	TCONS_00014010	TCONS_00014010	chr7	153120803	153120862	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014359	1.3319298	A	2.5057547	A	0.443244642966843	0	lncRNA	XR_109447	XR_109447	XR_109447	NA	Hs.110470	LOC100506418	uncharacterized LOC100506418	NA	THC2666075	NA	"PREDICTED: Homo sapiens hypothetical LOC100506418 (LOC100506418), miscRNA [XR_109447]"	chr17:25564987-25564928	hs|17q11.1	Agilent_HUMAN_G3V2	XR_109447	XR_109447	chr17	 25564928	 25564987	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51696_PI429285431	1.9114549	A	2.2615025	A	0.784558211908436	0	lncRNA	55257-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00011031 range=chr17:81058857-81063833 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011031 range=chr17:81058857-81063833 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 81058857	 81061856	+	NA	NA	NA	NA	METRNL	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40chr17:81048857-81052592"	NA	inter
CUST_23704_PI429285431	4.986048	P	6.037511	P	0.48247864709242	0	lncRNA	25269-1_{1..3000}	lnc-CAPN3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CAPN3-1:4	chr15	 42695939	 42698938	+	lnc-CAPN3-1	lnc-CAPN3-1:4	ENSG00000258461.1	RP11-164J13.1	ZFP106	NA	chr15:42705021-42706486	inner
CUST_17827_PI429285431	0.90260804	A	0.9940038	A	0.938614231407647	0	lncRNA	19562-1_{1..222}	lnc-SGCG-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SGCG-2:1	chr13	 23733692	 23733913	+	lnc-SGCG-2	lnc-SGCG-2:1	XLOC_010307	linc-SGCG-2	NA	NA	NA	inter
CUST_50498_PI429285431	4.362398	P	4.869676	P	0.703548604360655	0	lncRNA	54194-1_{1..846}	hg19_lincRNAsTranscripts_TCONS_l2_00030318 range=chrX:103231002-103232047 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030318 range=chrX:103231002-103232047 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	103231002	103231847	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50803_PI429285431	2.0676847	A	2.830141	A	0.5894918203667	0	lncRNA	54456-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00004466 range=chr11:32472909-32488802 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004466 range=chr11:32472909-32488802 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 32472909	 32475908	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80"	NA	inter
CUST_50777_PI429285431	5.699564	P	6.187073	P	0.71325556340089	0	lncRNA	54432-3_{6001..7207}	hg19_lincRNAsTranscripts_TCONS_l2_00004576 range=chr11:65266532-65273981 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004576 range=chr11:65266532-65273981 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65272532	 65273738	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28858_PI429285431	0.91559875	A	0.9073802	A	1.00571292161077	0	lncRNA	30566-1_{1..2625}	n326273|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000087047|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000087047|13.3960000|-0.0983926	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326273|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000087047|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000087047|13.3960000|-0.0983926	chr1	200890121	200892745	+	NA	NA	NA	NA	KIF21B	NA	chr1:200938520-200945658	inter
CUST_20670_PI429285431	3.4447162	P	3.8271384	P	0.767148511636384	0	lncRNA	22308-1_{1..581}	lnc-TRMT61B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRMT61B-2:1	chr2	 28886948	 28887528	-	lnc-TRMT61B-2	lnc-TRMT61B-2:1	ENSG00000230730.1	AC074011.2	NA	NA	NA	inter
CUST_46601_PI429285431	6.3194036	P	5.5859346	P	1.66263213381844	0	lncRNA	50782-2_{3001..6000}	"gi|253735748|ref|NR_028028.1| Homo sapiens inositol 1,4,5-trisphosphate receptor interacting protein-like 2 (ITPRIPL2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|253735748|ref|NR_028028.1| Homo sapiens inositol 1,4,5-trisphosphate receptor interacting protein-like 2 (ITPRIPL2), transcript variant 2, non-coding RNA"	Chr16	 19128254	 19131253	+	162073	NR_028028.1	NA	NA	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90"	NA	inter
CUST_24668_PI429285431	2.2156124	A	1.408696	A	1.74946815026098	0	lncRNA	26215-1_{1..594}	lnc-UCK2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UCK2-2:1	chr1	166056324	166056917	+	lnc-UCK2-2	lnc-UCK2-2:1	ENSG00000203307.2	RP11-375H19.2	FAM78B	NA	chr1:166046324-166066720	inner
CUST_16667_PI429285431	1.9848933	A	2.016037	A	0.9786441674458	0	lncRNA	18370-1_{1..376}	lnc-PDCD6IP-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDCD6IP-2:5	chr3	 34364840	 34365215	+	lnc-PDCD6IP-2	lnc-PDCD6IP-2:5	XLOC_002612	linc-ARPP21-1	NA	NA	NA	inter
CUST_24748_PI429285431	2.9283397	A	3.2356784	P	0.808131122438039	0	lncRNA	26292-1_{1..440}	lnc-AL136219.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AL136219.1-1:1	chr13	 21951806	 21952245	-	lnc-AL136219.1-1	lnc-AL136219.1-1:1	ENSG00000236953.1	ZDHHC20-IT1	ZDHHC20	NA	chr13:21941806-21962013	inner
CUST_17407_PI429285431	6.569077	P	6.7973623	P	0.853648884456555	0	lncRNA	19131-1_{1..294}	lnc-PKNOX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PKNOX1-2:1	chr21	 44303716	 44304009	+	lnc-PKNOX1-2	lnc-PKNOX1-2:1	XLOC_013957	linc-NDUFV3-1	NDUFV3	NA	chr21:44313378-44313945	inter
CUST_24173_PI429285431	0.9233044	A	0.9233364	A	0.999977819536212	0	lncRNA	25724-1_{1..578}	lnc-ADAMTS7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAMTS7-1:2	chr15	 79019954	 79020531	-	lnc-ADAMTS7-1	lnc-ADAMTS7-1:2	ENSG00000259329.1	RP11-160C18.1	NA	NA	NA	inter
CUST_47965_PI429285431	0.9128607	A	0.91650563	A	0.997476715893875	0	lncRNA	51856-1_{1..649}	"gi|410172662|ref|XR_171907.1| PREDICTED: Homo sapiens 60S ribosomal protein L31-like (LOC101060510), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172662|ref|XR_171907.1| PREDICTED: Homo sapiens 60S ribosomal protein L31-like (LOC101060510), misc_RNA"	NA	NA	NA	NA	NA	XR_171907.1	NA	NA	NA	NA	NA	Unknown
CUST_11308_PI429285431	5.57306	P	5.914083	P	0.789481300385266	0	lncRNA	12872-1_{1..3000}	lnc-AC114947.1.1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC114947.1.1-2:5	chr5	 43099122	 43102121	+	lnc-AC114947.1.1-2	lnc-AC114947.1.1-2:5	XLOC_004366	linc-ZNF131-1	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-58.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80"	NA	inter
CUST_50641_PI429285431	3.693655	P	4.0407925	P	0.786142363119885	0	lncRNA	54321-1_{1..574}	hg19_lincRNAsTranscripts_TCONS_l2_00002935 range=chr10:29085001-29097156 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002935 range=chr10:29085001-29097156 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 29085001	 29085574	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13589_PI429285431	3.073875	A	2.8544807	A	1.16424468823276	0	lncRNA	15229-1_{1..3000}	lnc-FOXA1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXA1-2:2	chr14	 38371221	 38374220	-	lnc-FOXA1-2	lnc-FOXA1-2:2	XLOC_010999	linc-FOXA1-1	NA	NA	NA	inter
LNCA_21_P0006759	2.2982466	A	2.8778052	A	0.669168481629844	0	lncRNA	XR_110401	XR_110401	XR_110401	NA	Hs.562293	LOC100506769	uncharacterized LOC100506769	ENST00000437677	THC2612367	NA	"PREDICTED: Homo sapiens hypothetical LOC100506769 (LOC100506769), miscRNA [XR_110401]"	chr10:50504219-50504160	hs|10q11.23	Agilent_HUMAN_G3V2	XR_110401	XR_110401	chr10	 50504160	 50504219	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46971_PI429285431	7.1300616	P	7.404308	P	0.826882131971675	0	lncRNA	51074-1_{1..3000}	"gi|339275989|ref|NR_040242.1| Homo sapiens metallophosphoesterase 1 (MPPE1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|339275989|ref|NR_040242.1| Homo sapiens metallophosphoesterase 1 (MPPE1), transcript variant 5, non-coding RNA"	Chr18	 11883470	 11886469	-	65258	NR_040242.1	NA	NA	NA	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90"	NA	inter
CUST_21996_PI429285431	0.8984831	A	0.89486516	A	1.00251091198301	0	lncRNA	23605-1_{1..319}	lnc-IBTK-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-IBTK-3:1	chr6	 82244564	 82244882	-	lnc-IBTK-3	lnc-IBTK-3:1	ENSG00000226089.2	RP1-300G12.2	NA	NA	NA	inter
CUST_4786_PI429285431	0.92121327	A	0.9125745	A	1.00600590261312	0	lncRNA	4730-1_{1..453}	"transcript_id ""ENST00000553464.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553464.1"" | genecode_v17"	chr14	 40855456	 40855908	+	ENSG00000258418.1	ENST00000553464.1	RP11-662J14.1	RP11-662J14.1-001	NA	NA	NA	inter
LNCA_21_P0007385	2.345299	A	2.9821646	A	0.643108650271323	0	lncRNA	TCONS_00019735	NA	NA	NA	NA	XLOC_009527	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009527), lincRNA [TCONS_00019735]"	chr11:95250231-95250172	hs|11q21	Agilent_HUMAN_G3V2	TCONS_00019735	TCONS_00019735	chr11	 95250172	 95250231	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25820_PI429285431	0.91285735	A	0.9146553	A	0.998754532266238	0	lncRNA	27341-1_{1..273}	lnc-MRPS22-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPS22-2:1	chr3	139185415	139185687	+	lnc-MRPS22-2	lnc-MRPS22-2:1	ENSG00000248790.1	RP11-319G6.3	RBP2	NA	chr3:139175415-139195352	inner
CUST_11971_PI429285431	2.5737855	A	2.6516552	A	0.947455638159523	0	lncRNA	13551-1_{1..1447}	lnc-NCOA3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCOA3-2:1	chr20	 46427201	 46428647	+	lnc-NCOA3-2	lnc-NCOA3-2:1	XLOC_013541	linc-ARFGEF2-14	NA	NA	NA	inter
CUST_46053_PI429285431	7.8421764	P	8.847004	P	0.498329677541837	0	lncRNA	50328-1_{1..2370}	"gi|383286742|ref|NR_047517.1| Homo sapiens HOX transcript antisense RNA (HOTAIR), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|383286742|ref|NR_047517.1| Homo sapiens HOX transcript antisense RNA (HOTAIR), transcript variant 1, non-coding RNA"	Chr12	 54356092	 54358461	-	100124700	NR_047517.1	NA	NA	NA	NA	NA	inter
CUST_10382_PI429285431	0.90480995	A	0.90272665	A	1.0014450766397	0	lncRNA	11911-1_{1..841}	lnc-PDGFD-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDGFD-1:3	chr11	103715180	103716020	-	lnc-PDGFD-1	lnc-PDGFD-1:3	XLOC_009537	linc-DCUN1D5-3	NA	NA	NA	inter
CUST_50264_PI429285431	8.384595	P	7.655014	P	1.65815744523107	0	lncRNA	53987-1_{1..473}	hg19_lincRNAsTranscripts_TCONS_l2_00028809 range=chr9:69080650-69084945 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028809 range=chr9:69080650-69084945 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69080650	 69081122	+	NA	NA	NA	NA	LOC100507370	NA	chr9:69070650-69089939	inter
CUST_9042_PI429285431	2.684736	A	2.3068173	A	1.29946583176848	0	lncRNA	10568-1_{1..3000}	lnc-PHYHD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHYHD1-1:1	chr9	131666291	131669290	+	lnc-PHYHD1-1	lnc-PHYHD1-1:1	ENSG00000249552	ENST00000508774	LRRC8A	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70chr9:131656291-131676498"	NA	inner
CUST_36802_PI429285431	7.3500233	P	7.290971	P	1.04178119455628	0	lncRNA	37974-1_{1..1072}	n345281|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_830|NULL|-1.2957800|-0.2787834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345281|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_830|NULL|-1.2957800|-0.2787834	chr14	 95998847	 95999918	-	NA	NA	NA	NA	GLRX5	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70chr14:96001323-96010820"	NA	inter
CUST_19583_PI429285431	3.3288028	P	3.5668142	P	0.847913264499625	0	lncRNA	21239-1_{1..1018}	lnc-MT1G-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MT1G-2:2	chr16	 56763418	 56764435	-	lnc-MT1G-2	lnc-MT1G-2:2	ENSG00000261302.1	RP11-343H19.1	NUP93	NA	chr16:56753418-56773880	inter
CUST_26360_PI429285431	0.90207076	A	0.9024345	A	0.99974790642547	0	lncRNA	27867-1_{1..558}	lnc-LHPP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LHPP-1:2	chr10	126402003	126402560	+	lnc-LHPP-1	lnc-LHPP-1:2	ENSG00000233334.1	RP11-464O2.2	FAM53B	NA	chr10:126392003-126412272	inner
LNCA_21_P0009780	0.92574954	A	0.91541016	A	1.00719245443611	0	lncRNA	TCONS_00027473	NA	NA	NA	NA	XLOC_012959	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012959), lincRNA [TCONS_00027473]"	chr19:9912745-9912804	hs|19p13.2	Agilent_HUMAN_G3V2	TCONS_00027473	TCONS_00027473	chr19	  9912745	  9912804	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10160_PI429285431	1.2209079	A	1.4492141	A	0.853636517925895	0	lncRNA	11685-1_{1..649}	lnc-TIMM21-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TIMM21-5:4	chr18	 70548425	 70549073	+	lnc-TIMM21-5	lnc-TIMM21-5:4	XLOC_012713	linc-C18orf55-5	NA	NA	NA	inter
CUST_47607_PI429285431	3.1658492	P	3.3564267	P	0.87625489284485	0	lncRNA	51607-4_{9001..12000}	"gi|383087740|ref|NR_001564.2| Homo sapiens X (inactive)-specific transcript (non-protein coding) (XIST), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|383087740|ref|NR_001564.2| Homo sapiens X (inactive)-specific transcript (non-protein coding) (XIST), non-coding RNA"	ChrX	 73049486	 73052485	-	7503	NR_001564.2	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
LNCA_21_P0009238	0.92658806	A	0.9169161	A	1.00672661453129	0	lncRNA	TCONS_00025353	NA	NA	NA	NA	XLOC_012174	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012174), lincRNA [TCONS_00025353]"	chr17:32739549-32739608	hs|17q12	Agilent_HUMAN_G3V2	TCONS_00025353	TCONS_00025353	chr17	 32739549	 32739608	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13900_PI429285431	0.9189203	A	1.1449168	A	0.85500425214271	0	lncRNA	15547-1_{1..689}	lnc-RP11-201M22.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-201M22.1.1-3:1	chr11	 91605020	 91605708	+	lnc-RP11-201M22.1.1-3	lnc-RP11-201M22.1.1-3:1	XLOC_009250	linc-FAT3-1	NA	NA	NA	inter
CUST_7360_PI429285431	0.9266144	A	0.9187321	A	1.00547854667047	0	lncRNA	9006-1_{1..1038}	lnc-NAA50-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NAA50-3:1	chr3	113529044	113530081	-	lnc-NAA50-3	lnc-NAA50-3:1	ENSG00000223613	ENST00000425915	ATP6V1A	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40chr3:113519044-113530905"	NA	inner
CUST_37354_PI429285431	3.7763557	P	4.493682	P	0.608223599440357	0	lncRNA	38458-1_{1..716}	n345799|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1348|NULL|-1.5157500|-0.0982082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345799|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1348|NULL|-1.5157500|-0.0982082	chr22	 22648797	 22649512	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18002_PI429285431	3.2158446	P	3.9629302	P	0.595805935047183	0	lncRNA	19736-1_{1..319}	lnc-RP11-168K9.2.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-168K9.2.1-3:1	chr11	127146401	127146719	+	lnc-RP11-168K9.2.1-3	lnc-RP11-168K9.2.1-3:1	XLOC_009325	linc-FLI1-3	NA	NA	NA	inter
CUST_30215_PI429285431	5.9389315	P	6.2137585	P	0.826549427441878	0	lncRNA	31990-1_{1..300}	n335063|AJ583696|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249151|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249151|-1.1672300|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335063|AJ583696|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249151|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249151|-1.1672300|-1.0000000	chr15	 73976554	 73976853	+	NA	NA	NA	NA	CD276	NA	chr15:73976622-74001980	inner
CUST_20751_PI429285431	1.3253436	A	1.6181477	A	0.816313883873718	0	lncRNA	22385-1_{1..539}	lnc-C2orf42-3:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:18	chr2	 70313256	 70313794	-	lnc-C2orf42-3	lnc-C2orf42-3:18	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_32432_PI429285431	2.4486966	A	2.1263535	A	1.25035962625217	0	lncRNA	34107-1_{1..3000}	n339029|AL137596|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1458|NULL|-1.0582300|-0.3560839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339029|AL137596|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1458|NULL|-1.0582300|-0.3560839	chr2	177618127	177621126	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35882_PI429285431	0.9213047	A	0.90730137	A	1.00975362828724	0	lncRNA	37269-1_{1..3000}	n344544|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_92|NULL|-1.3036900|-0.3386349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344544|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_92|NULL|-1.3036900|-0.3386349	chr8	115294143	115297142	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23657_PI429285431	4.7956486	P	5.3662367	P	0.673342251341543	0	lncRNA	25223-1_{1..721}	lnc-RP11-664D7.4.1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-664D7.4.1-3:5	chr8	 69913619	 69914339	-	lnc-RP11-664D7.4.1-3	lnc-RP11-664D7.4.1-3:5	ENSG00000253658.1	RP11-600K15.1	NA	NA	NA	inter
CUST_42246_PI429285431	5.989335	P	6.0328865	P	0.970263495591177	0	lncRNA	44382-1_{1..68}	ENST00000387429 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:9991:10058:1 gene:ENSG00000210164 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000387429 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:9991:10058:1 gene:ENSG00000210164 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	chrMT	     9991	    10058	+	ENSG00000210164	ENST00000387429	NA	NA	NA	NA	NA	Unknown
CUST_25400_PI429285431	4.9125533	P	5.2222133	P	0.80683188292126	0	lncRNA	26931-1_{1..534}	lnc-TBCCD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBCCD1-1:1	chr3	186383252	186383785	-	lnc-TBCCD1-1	lnc-TBCCD1-1:1	ENSG00000236524.1	RP11-134F2.2	HRG	NA	chr3:186383798-186393496	inter
CUST_15077_PI429285431	1.764904	A	2.2424726	A	0.718186978129476	0	lncRNA	16741-1_{1..308}	lnc-CES1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CES1-1:3	chr16	 55478025	 55478332	-	lnc-CES1-1	lnc-CES1-1:3	XLOC_011952	linc-IRX3-4	NA	NA	NA	inter
CUST_2414_PI429285431	6.6762815	P	6.937239	P	0.834533865122118	0	lncRNA	2406-1_{1..2146}	"transcript_id ""ENST00000518301.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518301.1"" | genecode_v17"	chr5	160358788	160360933	-	ENSG00000253417.1	ENST00000518301.1	RP11-109J4.1	RP11-109J4.1-002	NA	NA	NA	inter
CUST_10506_PI429285431	1.2380273	A	0.9800114	A	1.19583297602677	0	lncRNA	12032-1_{1..1762}	lnc-NDFIP2-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDFIP2-2:6	chr13	 79997687	 79999448	+	lnc-NDFIP2-2	lnc-NDFIP2-2:6	XLOC_010445	linc-NDFIP2-1	NA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80"	NA	inter
CUST_8803_PI429285431	5.422659	P	6.2341547	P	0.569790826537041	0	lncRNA	10344-1_{1..1525}	lnc-ZNF473-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-ZNF473-1:1	chr19	 50569332	 50570856	+	lnc-ZNF473-1	lnc-ZNF473-1:1	ENSG00000204666	CTD-2126E3.1	LOC100287477	NA	chr19:50561973-50577699	inter
LNCA_21_P0003536	0.9751368	A	0.9345535	A	1.02852959022866	0	lncRNA	ENST00000515825	NA	NA	NA	NA	XLOC_004168	NA	ENST00000515825	NA	NA	"BROAD Institute lincRNA (XLOC_004168), lincRNA [TCONS_00007899]"	chr4:174798681-174798622	hs|4q34.1	Agilent_HUMAN_G3V2	ENST00000515825	ENST00000515825	chr4	174798622	174798681	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23220_PI429285431	0.9286406	A	0.93024576	A	0.998888006595039	0	lncRNA	24792-1_{1..1058}	lnc-RPS25-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS25-1:12	chr11	118899932	118900989	-	lnc-RPS25-1	lnc-RPS25-1:12	ENSG00000137700.10	SLC37A4	SLC37A4	NA	chr11:118895061-118901616	inner
CUST_28470_PI429285431	0.9000792	A	0.9031663	A	0.997862473110192	0	lncRNA	30137-1_{1..444}	n325805|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044038|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044038|-1.2859300|-0.3550332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325805|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044038|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044038|-1.2859300|-0.3550332	chr13	 19146895	 19147338	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19928_PI429285431	1.0074272	A	1.5072486	A	0.707194323657355	0	lncRNA	21583-1_{1..689}	lnc-SERF1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SERF1B-1:1	chr5	 69292979	 69293667	+	lnc-SERF1B-1	lnc-SERF1B-1:1	ENSG00000250763.1	RP11-974F13.6	NA	NA	NA	inter
CUST_39719_PI429285431	5.22182	P	5.2134237	P	1.00583684002719	0	lncRNA	40652-1_{1..494}	n405656|NR_002821|lncRNA|Homosapiens||RefGeneNoncode|NR_002821||1.1549000|-0.2021038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405656|NR_002821|lncRNA|Homosapiens||RefGeneNoncode|NR_002821||1.1549000|-0.2021038	chr22	 38740669	 38741162	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30254_PI429285431	2.8367414	A	3.2514899	A	0.750150254325384	0	lncRNA	32029-1_{1..418}	n335130|AY187240|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250925|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250925|1.8992200|-0.1310338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335130|AY187240|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250925|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250925|1.8992200|-0.1310338	chr16	 50746105	 50746522	+	NA	NA	NA	NA	NOD2	NA	chr16:50736105-50766987	inner
CUST_50317_PI429285431	8.004434	P	7.8978305	P	1.07669042562056	0	lncRNA	54036-1_{1..326}	hg19_lincRNAsTranscripts_TCONS_l2_00029558 range=chr9:114035101-114046974 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029558 range=chr9:114035101-114046974 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	114035101	114035426	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007548	3.2180448	P	2.347766	A	1.8280161294093	0	lncRNA	TCONS_00020396	NA	NA	NA	NA	XLOC_009725	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009725), lincRNA [TCONS_00020396]"	chr12:47270373-47270432	hs|12q13.11	Agilent_HUMAN_G3V2	TCONS_00020396	TCONS_00020396	chr12	 47270373	 47270432	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16349_PI429285431	0.9153	A	0.91640407	A	0.999235009746715	0	lncRNA	18049-1_{1..702}	lnc-WASL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WASL-2:1	chr7	123520175	123520876	-	lnc-WASL-2	lnc-WASL-2:1	XLOC_006589	linc-WASL	HYAL4	NA	chr7:123510175-123517532	inter
CUST_14013_PI429285431	7.9410276	P	7.592931	P	1.27288016195495	0	lncRNA	15661-1_{1..911}	lnc-SRCIN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRCIN1-1:1	chr17	 36608562	 36609472	-	lnc-SRCIN1-1	lnc-SRCIN1-1:1	XLOC_012457	linc-GPR179	ARHGAP23	NA	chr17:36598562-36618764	inner
CUST_20410_PI429285431	1.4427309	A	1.243593	A	1.14801214134693	0	lncRNA	22052-1_{1..578}	lnc-TMEM64-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM64-1:1	chr8	 91632239	 91632816	-	lnc-TMEM64-1	lnc-TMEM64-1:1	ENSG00000254180.1	AB015752.3	TMEM64	NA	chr8:91634223-91642298	inter
CUST_30827_PI429285431	0.9281948	A	0.9149561	A	1.00921859952001	0	lncRNA	32614-1_{1..201}	n336757|Z77845|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328136|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328136|-1.1172600|-0.1192551	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336757|Z77845|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328136|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328136|-1.1172600|-0.1192551	chr7	142028495	142028695	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3891_PI429285431	4.192607	P	4.1019793	P	1.06483337842208	0	lncRNA	3860-1_{1..687}	"transcript_id ""ENST00000532947.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532947.1"" | genecode_v17"	chr11	 28373654	 28374340	+	ENSG00000255322.1	ENST00000532947.1	RP11-22P4.1	RP11-22P4.1-001	NA	NA	NA	inter
CUST_6460_PI429285431	0.89655316	A	0.9832452	A	0.941679455497166	0	lncRNA	6401-1_{1..108}	"transcript_id ""ENST00000591232.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591232.1"" | genecode_v17"	chr19	 32595886	 32595993	+	ENSG00000267133.1	ENST00000591232.1	AC011518.2	AC011518.2-003	NA	NA	NA	inter
CUST_38653_PI429285431	3.7928586	P	4.5930815	P	0.57426044596576	0	lncRNA	39656-1_{1..1422}	n383906|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xip.2||-0.9888950|-0.2208136	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n383906|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xip.2||-0.9888950|-0.2208136	chr20	 37076725	 37078146	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32872_PI429285431	5.859453	P	6.322262	P	0.725572156862982	0	lncRNA	34501-1_{1..2335}	n339538|BC040064|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1979|NULL|2.1658200|-0.1356186	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339538|BC040064|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1979|NULL|2.1658200|-0.1356186	chr21	 46340965	 46343299	+	NA	NA	NA	NA	ITGB2	NA	chr21:46330965-46348753	inner
CUST_34089_PI429285431	6.7837877	P	6.9866195	P	0.868843475409303	0	lncRNA	35617-1_{1..3000}	n340913|AL833696|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3378|NULL|1.1576800|-0.1694017	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340913|AL833696|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3378|NULL|1.1576800|-0.1694017	chr17	 78174028	 78177027	-	NA	NA	NA	NA	CARD14	"hg19_refFlat_CARD14:range=chr17:78155238-781762235'pad=0,hg19_refFlat_CARD14:range=chr17:78155238-781762235'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.40;hg19_refFlat_CARD14:range=chr17:78155238-781821445'pad=0,hg19_refFlat_CARD14:range=chr17:78155238-781821445'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr17:78164028-78182851"	NA	inner
CUST_44774_PI429285431	0.91486895	A	0.90968007	A	1.00360313327634	0	lncRNA	49313-2_{3001..3158}	"gi|374429562|ref|NR_046241.1| Homo sapiens ribosomal protein S16 pseudogene 5 (RPS16P5), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374429562|ref|NR_046241.1| Homo sapiens ribosomal protein S16 pseudogene 5 (RPS16P5), non-coding RNA"	Chr6	 53202258	 53202415	-	647190	NR_046241.1	NA	NA	NA	NA	NA	inter
CUST_35222_PI429285431	1.1829822	A	0.9251037	A	1.19571909220357	0	lncRNA	36621-1_{1..1451}	n342211|BC034815|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4701|NULL|-0.9796510|-0.3014176	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n342211|BC034815|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4701|NULL|-0.9796510|-0.3014176	chr15	 24803303	 24804753	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28149_PI429285431	0.91432744	A	0.92298067	A	0.994019989887237	0	lncRNA	29774-1_{1..596}	n325425|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323616|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323616|-1.2067900|-0.3181073	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325425|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323616|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323616|-1.2067900|-0.3181073	chr2	 13768106	 13768701	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48705_PI429285431	2.3996327	A	2.7262561	A	0.797400602212639	0	lncRNA	52547-1_{1..282}	hg19_lincRNAsTranscripts_TCONS_l2_00014846 range=chr2:114619059-114639552 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014846 range=chr2:114619059-114639552 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	114619059	114619340	-	NA	NA	NA	NA	ACTR3	"hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.00chr2:114647537-114649552"	NA	inter
CUST_51940_PI429285431	16.431503	P	16.511673	P	0.945946174571007	0	lncRNA	55482-1_{1..267}	hg19_lincRNAsTranscripts_TCONS_l2_00016171 range=chr20:18485234-18485738 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016171 range=chr20:18485234-18485738 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 18485234	 18485500	+	NA	NA	NA	NA	SEC23B	NA	chr20:18485225-18495738	inter
CUST_19250_PI429285431	0.96463937	A	1.3283527	A	0.77716167896713	0	lncRNA	20919-1_{1..788}	lnc-LHX2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LHX2-2:1	chr9	126513463	126514250	+	lnc-LHX2-2	lnc-LHX2-2:1	ENSG00000230826.1	RP11-417B4.2	DENND1A	NA	chr9:126503463-126524220	inner
CUST_48145_PI429285431	2.7437801	A	3.1480703	P	0.755607957338616	0	lncRNA	52012-1_{1..2686}	"gi|397137407|ref|XR_133034.2| PREDICTED: Homo sapiens uncharacterized LOC100505518 (LOC100505518), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397137407|ref|XR_133034.2| PREDICTED: Homo sapiens uncharacterized LOC100505518 (LOC100505518), misc_RNA"	NA	NA	NA	NA	NA	XR_133034.2	NA	NA	NA	NA	NA	Unknown
CUST_36951_PI429285431	1.1945056	A	1.4964173	A	0.811176802049566	0	lncRNA	38103-1_{1..2776}	n345419|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_968|NULL|-1.7430700|-0.3305703	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345419|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_968|NULL|-1.7430700|-0.3305703	chr1	 42399613	 42402388	-	NA	NA	NA	NA	HIVEP3	NA	chr1:42389613-42501596	inter
CUST_27823_PI429285431	1.0888877	A	2.0456011	A	0.515229320030654	0	lncRNA	29409-1_{1..963}	n325051|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078196|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078196|-1.1726100|-0.2634963	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325051|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078196|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078196|-1.1726100|-0.2634963	chr20	 18717307	 18718269	-	NA	NA	NA	NA	DTD1	"hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr20:18707307-18732933"	NA	inner
LNCA_21_P0001517	4.5765753	P	4.796577	P	0.85856442474759	0	lncRNA	TCONS_00001522	NA	NA	NA	NA	XLOC_000865	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000865), lincRNA [TCONS_00001522]"	chr1:69486201-69486142	hs|1p31.2	Agilent_HUMAN_G3V2	TCONS_00001522	TCONS_00001522	chr1	 69486142	 69486201	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7751_PI429285431	1.0563408	A	0.958153	A	1.07042803022915	0	lncRNA	9379-2_{3001..3214}	lnc-IFT140-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IFT140-2:1	chr16	  1730196	  1730409	-	lnc-IFT140-2	lnc-IFT140-2:1	ENSG00000245096	ENST00000500567	CRAMP1L	"hg19_refFlat_CRAMP1L:range=chr16:1664641-17240465'pad=0,hg19_refFlat_CRAMP1L:range=chr16:1664641-17240465'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40chr16:1717196-1727909"	NA	inner
CUST_35670_PI429285431	0.9381907	A	0.9211102	A	1.01190966233921	0	lncRNA	37092-1_{1..3000}	n342831|BX649107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5334|NULL|-0.8883230|-0.2424715	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342831|BX649107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5334|NULL|-0.8883230|-0.2424715	chr13	112967780	112970779	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12598_PI429285431	0.8965205	A	0.89678526	A	0.999816499190808	0	lncRNA	14211-1_{1..846}	lnc-TMEFF2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEFF2-3:1	chr2	194755827	194756672	-	lnc-TMEFF2-3	lnc-TMEFF2-3:1	XLOC_002443	linc-TMEFF2-3	NA	NA	NA	inter
CUST_11619_PI429285431	0.9217604	A	1.2560092	A	0.793197040585007	0	lncRNA	13199-1_{1..239}	lnc-SMOC2-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMOC2-8:1	chr6	169596756	169596994	+	lnc-SMOC2-8	lnc-SMOC2-8:1	XLOC_005552	linc-C6orf120-3	NA	NA	NA	inter
CUST_30197_PI429285431	0.9255055	A	0.9764256	A	0.965320485214256	0	lncRNA	31971-1_{1..332}	n334970|AJ459862|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248119_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248119_03|-1.1507200|-0.4327604	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334970|AJ459862|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248119_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248119_03|-1.1507200|-0.4327604	chr6	 29141080	 29141411	+	NA	NA	NA	NA	OR2J2	NA	chr6:29141311-29142351	inner
CUST_7196_PI429285431	0.91587794	A	1.7352201	A	0.566700287707241	0	lncRNA	7531-1_{1..339}	"transcript_id ""ENST00000577954.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577954.1"" | genecode_v17"	chr3	189831723	189832061	+	ENSG00000265045.1	ENST00000577954.1	RN7SL486P	RN7SL486P-201	LEPREL1	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50chr3:189821723-189840226"	NA	inner
CUST_21304_PI429285431	3.186909	P	3.4585927	P	0.828352251407413	0	lncRNA	22928-2_{3001..6000}	lnc-TRIOBP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIOBP-1:1	chr22	 38172790	 38175789	+	lnc-TRIOBP-1	lnc-TRIOBP-1:1	ENSG00000100101.12	RP1-37E16.12	TRIOBP	NA	chr22:38159790-38172563	inner
CUST_48198_PI429285431	2.180443	A	2.053696	A	1.09182905900281	0	lncRNA	52061-1_{1..1143}	"gi|410170243|ref|XR_172491.1| PREDICTED: Homo sapiens ankyrin repeat domain-containing protein 36A-like (LOC100996862), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170243|ref|XR_172491.1| PREDICTED: Homo sapiens ankyrin repeat domain-containing protein 36A-like (LOC100996862), misc_RNA"	NA	NA	NA	NA	NA	XR_172491.1	NA	NA	NA	NA	NA	Unknown
CUST_33933_PI429285431	0.9102084	A	0.9681669	A	0.960622496446204	0	lncRNA	35474-1_{1..1398}	n340731|BC031625|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3194|NULL|-1.0745100|-0.2552050	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340731|BC031625|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3194|NULL|-1.0745100|-0.2552050	chr5	169659452	169660849	-	NA	NA	NA	NA	C5orf58	NA	chr5:169659950-169670781	inner
CUST_14755_PI429285431	3.8813343	P	4.040064	P	0.895813491909164	0	lncRNA	16418-1_{1..3000}	lnc-C20orf166-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf166-3:2	chr20	 61063579	 61066578	+	lnc-C20orf166-3	lnc-C20orf166-3:2	XLOC_013601	linc-C20orf166	NA	NA	NA	inter
CUST_50723_PI429285431	0.9148844	A	0.909611	A	1.00366193088719	0	lncRNA	54391-2_{3001..3723}	hg19_lincRNAsTranscripts_TCONS_l2_00003714 range=chr10:95469445-95515325 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003714 range=chr10:95469445-95515325 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 95472445	 95473167	-	NA	NA	NA	NA	LGI1	NA	chr10:95517566-95525325	inter
CUST_5188_PI429285431	4.686098	P	3.9345005	P	1.68365611553635	0	lncRNA	5129-1_{1..908}	"transcript_id ""ENST00000559779.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559779.1"" | genecode_v17"	chr15	 52472290	 52473197	+	ENSG00000259577.1	ENST00000559779.1	RP11-430B1.2	RP11-430B1.2-002	GNB5	"hg19_refFlat_MYO5C:range=chr15:52486099-525878335'pad=0,hg19_refFlat_MYO5C:range=chr15:52486099-525878335'pad=0 3'pad=0 strand=- repeatMasking=none,-96.40chr15:52462290-52483565"	NA	inner
LNCA_33_P3217403	3.8521721	P	3.249134	P	1.51891180208627	0	lncRNA	ENST00000541173	XR_110849	XR_110849	NA	Hs.632505	NA	NA	ENST00000541173	THC2483590	NA	"PREDICTED: Homo sapiens hypothetical protein FLJ30430 (FLJ30430), miscRNA [XR_110849]"	chr1:231320880-231320821	hs|1q42.2	Agilent_HUMAN_G3V2	ENST00000541173	ENST00000541173	chr1	231320821	231320880	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_55_PI429201921	0.92693645	A	0.91428906	A	1.00880504103802	0	lncRNA	57-1_{1..1633}	TC06003245.hg.1	TCONS_00011200-XLOC_005565 // Rinn lincRNAs // linc-FBXL14 chr6:+:171004401-171006035 // chr6 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6:+:171004401-171006035	NA	Affy_HUMAN_HTA2.0	TCONS_00011200-XLOC_005565	linc-FBXL14	chr6	171004401	171006035	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6116_PI429285431	2.7702546	A	3.0766628	A	0.808652513681031	0	lncRNA	6042-1_{1..735}	"transcript_id ""ENST00000583267.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583267.1"" | genecode_v17"	chr18	 21739473	 21740207	-	ENSG00000265750.1	ENST00000583267.1	RP11-799B12.4	RP11-799B12.4-001	OSBPL1A	"hg19_refFlat_CABYR:range=chr18:21735760-217414805'pad=0,hg19_refFlat_CABYR:range=chr18:21735760-217414805'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_CABYR:range=chr18:21723079-217414805'pad=0,hg19_refFlat_CABYR:range=chr18:21723079-217414805'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40chr18:21742009-21752175"	NA	inner
CUST_52215_PI429285431	2.5431838	A	1.0525326	A	2.81015790713934	0	lncRNA	55730-2_{3001..5273}	hg19_lincRNAsTranscripts_TCONS_00029986 range=chr6_qbl_hap6:2318135-2323435 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00029986 range=chr6_qbl_hap6:2318135-2323435 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6_qbl_hap6	  2321135	  2323407	+	NA	NA	NA	NA	NA	"hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.71;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20"	NA	Unknown
CUST_43102_PI429285431	0.9077044	A	0.900446	A	1.00504381692942	0	lncRNA	47720-1_{1..105}	ENST00000516042 ncrna:snRNA chromosome:GRCh37:21:21728060:21728164:-1 gene:ENSG00000251851 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516042 ncrna:snRNA chromosome:GRCh37:21:21728060:21728164:-1 gene:ENSG00000251851 gene_biotype:snRNA transcript_biotype:snRNA	chr21	 21728060	 21728164	-	ENSG00000251851	ENST00000516042	NA	NA	NA	NA	NA	inter
LNCA_21_P0006549	3.8338385	P	4.357774	P	0.695472078320859	0	lncRNA	THC2697511	NA	NA	NA	NA	XLOC_008233	NA	NA	THC2697511	NA	"BROAD Institute lincRNA (XLOC_008233), lincRNA [TCONS_00017369]"	NA	NA	Agilent_HUMAN_G3V2	THC2697511	THC2697511	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32034_PI429285431	6.9427595	P	6.6888595	P	1.19242621677902	0	lncRNA	33753-2_{3001..6000}	n338599|D84239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1005|NULL|36.1234000|-0.1103645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338599|D84239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1005|NULL|36.1234000|-0.1103645	chr19	 40356970	 40359969	-	NA	NA	NA	NA	FCGBP	NA	chr19:40353963-40440533	inner
CUST_20512_PI429285431	1.648577	A	1.3699815	A	1.21301341024979	0	lncRNA	22154-1_{1..473}	lnc-YES1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YES1-1:2	chr18	   905464	   905936	-	lnc-YES1-1	lnc-YES1-1:2	ENSG00000265179.1	RP11-672L10.2	ADCYAP1	"hg19_refFlat_ADCYAP1:range=chr18:905388-9096365'pad=0,hg19_refFlat_ADCYAP1:range=chr18:905388-9096365'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.00chr18:904944-912173"	NA	inner
CUST_48396_PI429285431	0.9187875	A	0.919276	A	0.999661454921619	0	lncRNA	52250-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00000536 range=chr1:120102717-120147798 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000536 range=chr1:120102717-120147798 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	120105717	120108716	+	NA	NA	NA	NA	ZNF697	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr1:120143876-120157798"	NA	inter
CUST_20778_PI429285431	0.91415054	A	2.7266023	A	0.284706678386794	0	lncRNA	22411-1_{1..407}	lnc-B3GAT2-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-B3GAT2-2:5	chr6	 72019999	 72020405	-	lnc-B3GAT2-2	lnc-B3GAT2-2:5	ENSG00000232295.1	RP11-154D6.1	OGFRL1	NA	chr6:72009999-72011973	inter
CUST_3308_PI429285431	0.90130866	A	1.5913175	A	0.619850051875585	0	lncRNA	3287-1_{1..1721}	"transcript_id ""ENST00000446592.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446592.3"" | genecode_v17"	chr8	130363937	130365657	-	ENSG00000229140.4	ENST00000446592.3	CCDC26	CCDC26-001	NA	NA	NA	inter
CUST_49181_PI429285431	0.905339	A	1.0066502	A	0.932185385459897	0	lncRNA	53005-1_{1..761}	hg19_lincRNAsTranscripts_TCONS_l2_00021325 range=chr4:142245756-142253762 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021325 range=chr4:142245756-142253762 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	142245756	142246516	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50"	NA	inter
LNCA_21_P0007363	1.7780737	A	0.9244423	A	1.80704370560153	0	lncRNA	TCONS_00019670	NA	NA	NA	NA	XLOC_009475	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009475), lincRNA [TCONS_00019670]"	chr11:65574496-65574437	hs|11q13.1	Agilent_HUMAN_G3V2	TCONS_00019670	TCONS_00019670	chr11	 65574437	 65574496	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004843	1.7655778	A	2.0440335	A	0.824473083496283	0	lncRNA	TCONS_00011702	NA	NA	NA	NA	XLOC_005181	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005181), lincRNA [TCONS_00011702]"	chr6:14512375-14512434	hs|6p23	Agilent_HUMAN_G3V2	TCONS_00011702	TCONS_00011702	chr6	 14512375	 14512434	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27337_PI429285431	1.4885209	A	2.0581167	A	0.673805542149682	0	lncRNA	28897-1_{1..643}	n324493|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040978|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040978|-1.3023300|-0.4318817	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324493|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040978|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040978|-1.3023300|-0.4318817	chr6	 53971646	 53972288	+	NA	NA	NA	NA	MLIP	NA	chr6:53961646-53989909	inner
CUST_1890_PI429285431	3.1140397	A	3.0859632	P	1.01965174937297	0	lncRNA	1881-1_{1..619}	"transcript_id ""ENST00000507844.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507844.1"" | genecode_v17"	chr4	134792401	134793019	-	ENSG00000251388.1	ENST00000507844.1	RP11-427M20.1	RP11-427M20.1-001	NA	NA	NA	inter
CUST_4021_PI429285431	3.9860518	P	4.2521496	P	0.831565724794755	0	lncRNA	3982-1_{1..832}	"transcript_id ""ENST00000525328.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525328.1"" | genecode_v17"	chr11	 76423440	 76424271	-	ENSG00000254761.1	ENST00000525328.1	RP11-672A2.1	RP11-672A2.1-001	NA	NA	NA	inter
LNCA_21_P0008145	0.9682911	A	0.9192607	A	1.03456938139826	0	lncRNA	TCONS_00021974	NA	NA	NA	NA	XLOC_010575	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010575), lincRNA [TCONS_00021974]"	chr13:39790973-39790914	hs|13q13.3	Agilent_HUMAN_G3V2	TCONS_00021974	TCONS_00021974	chr13	 39790914	 39790973	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10728_PI429285431	1.547921	A	1.5414913	A	1.00446667441101	0	lncRNA	12266-1_{1..370}	lnc-FAM50B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM50B-1:1	chr6	  3841869	  3842238	+	lnc-FAM50B-1	lnc-FAM50B-1:1	XLOC_005136	linc-FAM50B-1	FAM50B	NA	chr6:3849632-3851551	inter
CUST_34642_PI429285431	4.1443276	P	2.3829355	A	3.39025102721079	0	lncRNA	36095-1_{1..1678}	n341541|AK094296|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4011|NULL|-1.2769800|-0.5325459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341541|AK094296|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4011|NULL|-1.2769800|-0.5325459	chr8	 79630314	 79631991	+	NA	NA	NA	NA	FAM164A	NA	chr8:79620314-79632000	inner
CUST_37236_PI429285431	4.33461	P	4.9472184	P	0.654013173182218	0	lncRNA	38345-1_{1..2352}	n345668|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1217|NULL|-1.7441600|-0.3141040	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345668|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1217|NULL|-1.7441600|-0.3141040	chr5	 38828029	 38830380	-	NA	NA	NA	NA	OSMR	NA	chr5:38818029-38854039	inter
CUST_409_PI429285431	0.9219957	A	0.92141277	A	1.0004041379277	0	lncRNA	401-1_{1..679}	"transcript_id ""ENST00000423394.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423394.1"" | genecode_v17"	chr1	143378736	143379414	+	ENSG00000238261.4	ENST00000423394.1	RP11-435B5.5	RP11-435B5.5-009	NA	NA	NA	inter
CUST_7260_PI429285431	1.0350156	A	0.9194156	A	1.08342553585592	0	lncRNA	8036-1_{1..303}	"transcript_id ""ENST00000364417.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000364417.1"" | genecode_v17"	chr9	 37661744	 37662046	-	ENSG00000201287.1	ENST00000364417.1	RN7SKP171	RN7SKP171-201	FRMPD1	NA	chr9:37651744-37672046	inner
LNCA_21_P0009340	6.086528	P	6.622821	P	0.689540406466367	0	lncRNA	TCONS_00025711	NA	NA	NA	NA	XLOC_012537	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012537), lincRNA [TCONS_00025711]"	chr17:57506558-57506499	hs|17q22	Agilent_HUMAN_G3V2	TCONS_00025711	TCONS_00025711	chr17	 57506499	 57506558	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37702_PI429285431	0.8982156	A	0.9392712	A	0.971943529544158	0	lncRNA	38796-1_{1..339}	n346197|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1747|NULL|-1.3535700|-0.2324154	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346197|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1747|NULL|-1.3535700|-0.2324154	chr10	 16380642	 16380980	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17114_PI429285431	2.557515	A	1.7668176	A	1.7299105007243	0	lncRNA	18824-1_{1..311}	lnc-AK5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AK5-1:1	chr1	 77686473	 77686783	+	lnc-AK5-1	lnc-AK5-1:1	XLOC_000263	linc-AK5-1	PIGK	NA	chr1:77676473-77685132	inter
CUST_30958_PI429285431	0.9054397	A	1.0659546	A	0.894705692149364	0	lncRNA	32746-1_{1..235}	n337079|DQ229109|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342509|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342509|0.9596040|-0.2438701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337079|DQ229109|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342509|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342509|0.9596040|-0.2438701	chr3	 42906337	 42906571	+	NA	NA	NA	NA	CCBP2	NA	chr3:42896337-42908775	inner
LNCA_21_P0008943	0.9366731	A	0.9143257	A	1.01561062978678	0	lncRNA	TCONS_00024412	NA	NA	NA	NA	XLOC_011724	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011724), lincRNA [TCONS_00024412]"	chr16:52307933-52307992	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00024412	TCONS_00024412	chr16	 52307933	 52307992	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2208_PI429285431	0.89733404	A	0.88955754	A	1.00540481263338	0	lncRNA	2200-1_{1..691}	"transcript_id ""ENST00000503652.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503652.1"" | genecode_v17"	chr5	 75377771	 75378461	-	ENSG00000248127.1	ENST00000503652.1	CTC-235G5.3	CTC-235G5.3-001	SV2C	NA	chr5:75374822-75390011	inner
CUST_32062_PI429285431	2.3521538	A	2.503396	A	0.90047479522667	0	lncRNA	33774-3_{6001..6976}	n338623|BX648491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1032|NULL|-0.9419510|-0.2251874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338623|BX648491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1032|NULL|-0.9419510|-0.2251874	chr13	 30732022	 30732997	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42679_PI429285431	10.205152	P	10.122462	P	1.05899075893228	0	lncRNA	45595-1_{1..142}	ENST00000459187 ncrna:snoRNA chromosome:GRCh37:11:10823014:10823155:-1 gene:ENSG00000238622 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459187 ncrna:snoRNA chromosome:GRCh37:11:10823014:10823155:-1 gene:ENSG00000238622 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 10823014	 10823155	-	ENSG00000238622	ENST00000459187	NA	NA	EIF4G2	NA	chr11:10818593-10830582	inner
CUST_2959_PI429285431	1.5916408	A	1.7502878	A	0.895864844341303	0	lncRNA	2940-1_{1..432}	"transcript_id ""ENST00000426169.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426169.2"" | genecode_v17"	chr7	156850403	156850834	-	ENSG00000236102.2	ENST00000426169.2	RP4-639J15.1	RP4-639J15.1-001	NA	NA	NA	inter
CUST_36933_PI429285431	1.1672356	A	1.442809	A	0.826121910252182	0	lncRNA	38088-1_{1..1137}	n345404|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_953|NULL|-1.2859300|-0.1380908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345404|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_953|NULL|-1.2859300|-0.1380908	chr21	 44920483	 44921619	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36034_PI429285431	3.6257112	P	4.052537	P	0.743896698523035	0	lncRNA	37359-1_{1..775}	n344640|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_188|NULL|-1.3952300|-0.2248314	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344640|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_188|NULL|-1.3952300|-0.2248314	chr12	111380743	111381517	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32710_PI429285431	1.6986918	A	1.2745402	A	1.34178321354742	0	lncRNA	34353-1_{1..1962}	n339341|AK055655|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1773|NULL|-1.3015700|-0.3389666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339341|AK055655|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1773|NULL|-1.3015700|-0.3389666	chr3	 44708903	 44710864	+	NA	NA	NA	NA	ZNF35	NA	chr3:44698903-44702283	inter
CUST_36099_PI429285431	9.775833	P	9.529589	P	1.18611508761617	0	lncRNA	37394-3_{6001..6904}	n344679|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_228|NULL|-1.3112000|-0.2416377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344679|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_228|NULL|-1.3112000|-0.2416377	chr17	 70402859	 70403762	-	NA	NA	NA	NA	NA	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70"	NA	inter
CUST_6089_PI429285431	6.4649205	P	6.318002	P	1.10720203521908	0	lncRNA	6015-1_{1..258}	"transcript_id ""ENST00000591853.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591853.1"" | genecode_v17"	chr18	 12081539	 12081796	+	ENSG00000267722.1	ENST00000591853.1	RP11-815J4.1	RP11-815J4.1-001	ANKRD62	NA	chr18:12091670-12095266	inter
CUST_44070_PI429285431	10.738883	P	9.667082	P	2.10205584839434	0	lncRNA	48741-1_{1..3000}	"gi|300388184|ref|NR_034059.1| Homo sapiens proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 (PSMD1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300388184|ref|NR_034059.1| Homo sapiens proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 (PSMD1), transcript variant 3, non-coding RNA"	Chr2	231921578	231924577	+	5707	NR_034059.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004195	0.92484957	A	0.9096285	A	1.01060629391506	0	lncRNA	ENST00000511693	NA	NA	NA	NA	XLOC_004250	NA	ENST00000511693	THC2681410	NA	"BROAD Institute lincRNA (XLOC_004250), lincRNA [TCONS_00009832]"	chr5:1934033-1934092	hs|5p15.33	Agilent_HUMAN_G3V2	ENST00000511693	ENST00000511693	chr5	  1934033	  1934092	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23295_PI429285431	0.922314	A	1.2967207	A	0.771422590563983	0	lncRNA	24866-1_{1..352}	lnc-MAP6-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP6-4:6	chr11	 75522469	 75522820	-	lnc-MAP6-4	lnc-MAP6-4:6	ENSG00000255507.1	RP11-535A19.2	DGAT2	NA	chr11:75512469-75512579	inter
CUST_1692_PI429285431	1.3017169	A	1.0664823	A	1.17709813232498	0	lncRNA	1675-1_{1..747}	"transcript_id ""ENST00000509244.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509244.1"" | genecode_v17"	chr4	 11724119	 11724865	+	ENSG00000249631.1	ENST00000509244.1	RP11-281P23.2	RP11-281P23.2-009	NA	NA	NA	inter
CUST_20312_PI429285431	10.266468	P	10.275034	P	0.994080093362086	0	lncRNA	21955-1_{1..430}	lnc-CARHSP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CARHSP1-1:1	chr16	  8942493	  8942922	-	lnc-CARHSP1-1	lnc-CARHSP1-1:1	ENSG00000260350.1	RP11-152P23.2	PMM2	"hg19_refFlat_PMM2:range=chr16:8891740-89416825'pad=0,hg19_refFlat_PMM2:range=chr16:8891740-89416825'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40chr16:8932493-8943194"	NA	inner
CUST_40555_PI429285431	1.2796034	A	1.038264	A	1.1820896057149	0	lncRNA	41313-1_{1..1542}	n409725|NR_034126|lncRNA|Homosapiens||RefGeneNoncode|NR_034126||-0.1903130|-0.2380034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n409725|NR_034126|lncRNA|Homosapiens||RefGeneNoncode|NR_034126||-0.1903130|-0.2380034	chr1	112141628	112143169	-	NA	NA	NA	NA	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-60.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_29361_PI429285431	7.451252	P	6.744267	P	1.63238911992483	0	lncRNA	31113-1_{1..426}	n332619|AL512719|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000026494|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000026494|-1.1292200|-0.4151718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332619|AL512719|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000026494|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000026494|-1.1292200|-0.4151718	chr7	  2768097	  2768522	-	NA	NA	NA	NA	GNA12	NA	chr7:2767739-2778523	inner
CUST_48389_PI429285431	0.89809716	A	0.89438653	A	1.0025753231849	0	lncRNA	52242-1_{1..336}	hg19_lincRNAsTranscripts_TCONS_l2_00002598 range=chr1:111930959-111933696 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002598 range=chr1:111930959-111933696 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	111930959	111931294	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48175_PI429285431	1.170831	A	0.91146666	A	1.19695120461084	0	lncRNA	52039-1_{1..1764}	"gi|410169973|ref|XR_172438.1| PREDICTED: Homo sapiens zinc finger protein 737-like (LOC101060810), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410169973|ref|XR_172438.1| PREDICTED: Homo sapiens zinc finger protein 737-like (LOC101060810), misc_RNA"	NA	NA	NA	NA	NA	XR_172438.1	NA	NA	NA	NA	NA	Unknown
CUST_7735_PI429285431	0.9268105	A	0.9151013	A	1.00814922459651	0	lncRNA	9364-1_{1..2830}	lnc-KLRD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KLRD1-1:1	chr12	 10548778	 10551607	+	lnc-KLRD1-1	lnc-KLRD1-1:1	ENSG00000245648	RP11-277P12.20	KLRK1	"hg19_refFlat_KLRK1:range=chr12:10525713-105414095'pad=0,hg19_refFlat_KLRK1:range=chr12:10525713-105414095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_KLRC4-KLRK1:range=chr12:10525713-105414095'pad=0,hg19_refFlat_KLRC4-KLRK1:range=chr12:10525713-105414095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80chr12:10538778-10542653"	NA	inner
CUST_30472_PI429285431	7.0778127	P	7.614297	P	0.689448980121301	0	lncRNA	32252-1_{1..529}	n335617|CR600243|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000279438|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000279438|2.3170700|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335617|CR600243|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000279438|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000279438|2.3170700|-1.0000000	chr4	   675618	   676146	-	NA	NA	NA	NA	MYL5	"hg19_refFlat_MYL5:range=chr4:671816-6757835'pad=0,hg19_refFlat_MYL5:range=chr4:671816-6757835'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00chr4:671711-675817"	NA	inner
CUST_39415_PI429285431	0.9231436	A	1.700287	A	0.583521047606649	0	lncRNA	40375-1_{1..274}	n386687|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010rrn.1||-1.3217400|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386687|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010rrn.1||-1.3217400|-1.0000000	chr11	 74720866	 74721139	+	NA	NA	NA	NA	NEU3	NA	chr11:74710866-74718743	inter
CUST_46183_PI429285431	13.993544	P	13.543985	P	1.36562275224255	0	lncRNA	50429-1_{1..368}	"gi|50344742|ref|NR_002162.1| Homo sapiens ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2 (ATP5EP2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|50344742|ref|NR_002162.1| Homo sapiens ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2 (ATP5EP2), non-coding RNA"	Chr13	 28519343	 28519710	+	432369	NR_002162.1	NA	NA	NA	NA	NA	inter
CUST_41924_PI429285431	5.4712257	P	5.676244	P	0.867527682846352	0	lncRNA	43670-1_{1..84}	ENST00000408599 ncrna:miRNA chromosome:GRCh37:16:67911560:67911643:1 gene:ENSG00000221526 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408599 ncrna:miRNA chromosome:GRCh37:16:67911560:67911643:1 gene:ENSG00000221526 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 67911560	 67911643	+	ENSG00000221526	ENST00000408599	NA	NA	NUTF2	NA	chr16:67901560-67905219	inner
CUST_46999_PI429285431	10.539666	P	10.712671	P	0.886993231062537	0	lncRNA	51098-1_{1..537}	"gi|310123759|ref|XR_109479.1| PREDICTED: Homo sapiens chromosome 18 open reading frame 12 (C18orf12), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123759|ref|XR_109479.1| PREDICTED: Homo sapiens chromosome 18 open reading frame 12 (C18orf12), misc_RNA"	Chr18	 45778672	 45779208	+	84322	XR_109479.1	NA	NA	NA	NA	NA	inter
CUST_4131_PI429285431	1.1039588	A	1.9580787	A	0.553202698873767	0	lncRNA	4090-1_{1..1038}	"transcript_id ""ENST00000537961.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537961.1"" | genecode_v17"	chr12	   276168	   277205	-	ENSG00000256540.1	ENST00000537961.1	RP11-598F7.6	RP11-598F7.6-002	IQSEC3	NA	chr12:266168-287626	inner
CUST_45034_PI429285431	0.9184668	A	0.9082733	A	1.0070906159998	0	lncRNA	49532-1_{1..3000}	"gi|218082922|ref|NR_024586.1| Homo sapiens uncharacterized LOC100216545 (LOC100216545), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|218082922|ref|NR_024586.1| Homo sapiens uncharacterized LOC100216545 (LOC100216545), non-coding RNA"	Chr7	104650989	104653988	-	100216545	NR_024586.1	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80"	NA	inter
CUST_3893_PI429285431	0.93041015	A	0.93032914	A	1.00005615342964	0	lncRNA	3862-1_{1..520}	"transcript_id ""ENST00000505409.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505409.1"" | genecode_v17"	chr11	 28700730	 28701249	+	ENSG00000248990.1	ENST00000505409.1	RP11-960D24.1	RP11-960D24.1-001	NA	NA	NA	inter
CUST_52082_PI429285431	1.0111969	A	1.644566	A	0.644669171664544	0	lncRNA	55611-1_{1..233}	hg19_lincRNAsTranscripts_TCONS_l2_00017546 range=chr22:17082255-17103768 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017546 range=chr22:17082255-17103768 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17082255	 17082487	+	NA	NA	NA	NA	CCT8L2	NA	chr22:17072255-17073700	inter
LNCA_21_P0005342	1.8869537	A	3.2490072	P	0.389028161533342	0	lncRNA	ENST00000442017	NA	NA	NA	NA	XLOC_006676	NA	ENST00000442017	NA	NA	"BROAD Institute lincRNA (XLOC_006676), lincRNA [TCONS_00013284]"	chr7:157075009-157074950	hs|7q36.3	Agilent_HUMAN_G3V2	ENST00000442017	ENST00000442017	chr7	157074950	157075009	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002262	0.92671	A	0.9170391	A	1.00672587485327	0	lncRNA	TCONS_00003801	NA	NA	NA	NA	XLOC_001596	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001596), lincRNA [TCONS_00003801]"	chr2:102674303-102674362	hs|2q11.2	Agilent_HUMAN_G3V2	TCONS_00003801	TCONS_00003801	chr2	102674303	102674362	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10152_PI429285431	0.9508712	A	1.9529887	A	0.499266668723745	0	lncRNA	11676-1_{1..1052}	lnc-ST3GAL5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ST3GAL5-1:1	chr2	 86131205	 86132256	-	lnc-ST3GAL5-1	lnc-ST3GAL5-1:1	XLOC_002192	linc-ST3GAL5-2	NA	NA	NA	inter
CUST_27874_PI429285431	1.5879104	A	0.90639913	A	1.60381892804628	0	lncRNA	29467-1_{1..1618}	n325110|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256956|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256956|0.1810610|-0.2690549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325110|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256956|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256956|0.1810610|-0.2690549	chr2	231569084	231570701	+	NA	NA	NA	NA	CAB39	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90chr2:231577557-231608014"	NA	inner
CUST_16211_PI429285431	3.039981	A	4.0099263	P	0.510525419134888	0	lncRNA	17917-1_{1..368}	lnc-ITGA2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITGA2-1:6	chr5	 52408070	 52408437	+	lnc-ITGA2-1	lnc-ITGA2-1:6	XLOC_004382	linc-FST	MOCS2	NA	chr5:52398070-52405598	inter
CUST_37194_PI429285431	0.927414	A	1.0087702	A	0.945168726702282	0	lncRNA	38305-1_{1..776}	n345624|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1173|NULL|-1.3169300|-0.2570423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345624|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1173|NULL|-1.3169300|-0.2570423	chr4	  4546464	  4547239	-	NA	NA	NA	NA	STX18	NA	chr4:4536464-4543775	inter
CUST_383_PI429201921	6.781698	P	6.6607504	P	1.08744889300176	0	lncRNA	245-1_{1..3000}	TC22001135.hg.1	TCONS_l2_00018274-XLOC_l2_009405 // Broad TUCP // linc-MPPED1-1 chr22:+:43796336-43805687 // chr22 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00017796-XLOC_l2_009405 // Broad TUCP // linc-MPPED1-1 chr22:+:43800847-43805731 // chr22 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr22:+:43796336-43805687	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00018274-XLOC_l2_009405	linc-MPPED1-1	chr22	 43796336	 43805687	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39759_PI429285431	0.9133983	A	0.9278958	A	0.990001420258319	0	lncRNA	40679-4_{9001..12000}	n405913|NR_003149|lncRNA|Homosapiens||RefGeneNoncode|NR_003149||40.8024000|-0.2615927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405913|NR_003149|lncRNA|Homosapiens||RefGeneNoncode|NR_003149||40.8024000|-0.2615927	chr5	 89863616	 89866615	+	NA	NA	NA	NA	GPR98	NA	chr5:89854617-90460033	inner
CUST_45147_PI429285431	0.901394	A	0.89828163	A	1.00215965920208	0	lncRNA	49627-1_{1..772}	"gi|169403993|ref|NR_015383.1| Homo sapiens uncharacterized LOC340357 (LOC340357), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|169403993|ref|NR_015383.1| Homo sapiens uncharacterized LOC340357 (LOC340357), non-coding RNA"	NA	NA	NA	NA	NA	NR_015383.1	NA	NA	NA	NA	NA	Unknown
CUST_13534_PI429285431	1.9139645	A	2.0435257	A	0.914109437063911	0	lncRNA	15174-1_{1..1055}	lnc-SLC16A8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC16A8-2:1	chr22	 38430172	 38431226	-	lnc-SLC16A8-2	lnc-SLC16A8-2:1	XLOC_014371	linc-SOX10	NA	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20"	NA	inter
CUST_42052_PI429285431	7.2424526	P	6.3806167	P	1.81734950589855	0	lncRNA	43956-1_{1..131}	ENST00000579335 ncrna:miRNA chromosome:GRCh37:12:104324203:104324333:1 gene:ENSG00000265072 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579335 ncrna:miRNA chromosome:GRCh37:12:104324203:104324333:1 gene:ENSG00000265072 gene_biotype:miRNA transcript_biotype:miRNA	chr12	104324203	104324333	+	ENSG00000265072	ENST00000579335	NA	NA	HSP90B1	NA	chr12:104324189-104334333	inner
CUST_41583_PI429285431	0.90320826	A	0.90008175	A	1.00216948151839	0	lncRNA	42909-1_{1..88}	ENST00000401239 ncrna:miRNA chromosome:GRCh37:3:189547711:189547798:1 gene:ENSG00000216058 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401239 ncrna:miRNA chromosome:GRCh37:3:189547711:189547798:1 gene:ENSG00000216058 gene_biotype:miRNA transcript_biotype:miRNA	chr3	189547711	189547798	+	ENSG00000216058	ENST00000401239	NA	NA	TP63	NA	chr3:189537711-189557798	inner
LNCA_21_P0002151	0.9475012	A	0.9264124	A	1.01472500247391	0	lncRNA	ENST00000437798	NA	BC055007	NA	Hs.591591	XLOC_001300	NA	ENST00000437798	THC2612334	NA	"BROAD Institute lincRNA (XLOC_001300), lincRNA [TCONS_00003526]"	chr2:199842-199901	hs|2p25.3	Agilent_HUMAN_G3V2	ENST00000437798	ENST00000437798	chr2	   199842	   199901	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43146_PI429285431	1.0646893	A	0.9625757	A	1.07334479986677	0	lncRNA	47961-1_{1..741}	ENST00000596091 havana:sense_intronic chromosome:GRCh37:1:146130445:146147524:-1 gene:ENSG00000227733 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000596091 havana:sense_intronic chromosome:GRCh37:1:146130445:146147524:-1 gene:ENSG00000227733 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr1	146130445	146131185	-	ENSG00000227733	ENST00000596091	NA	NA	NA	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80"	NA	inter
CUST_25516_PI429285431	1.0236425	A	0.91059875	A	1.08150755990766	0	lncRNA	27046-1_{1..398}	lnc-GSG2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GSG2-3:1	chr17	  3633682	  3634079	+	lnc-GSG2-3	lnc-GSG2-3:1	ENSG00000262358.1	CTD-3195I5.4	ITGAE	"hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ITGAE:range=chr17:3618141-37044385'pad=0,hg19_refFlat_ITGAE:range=chr17:3618141-37044385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-20.70;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-27.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50chr17:3623682-3643787"	NA	inner
CUST_12138_PI429285431	0.9120231	A	0.9058126	A	1.0043140694856	0	lncRNA	13736-1_{1..1750}	lnc-FSIP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FSIP2-1:1	chr2	187001824	187003573	+	lnc-FSIP2-1	lnc-FSIP2-1:1	XLOC_001781	linc-ZC3H15	NA	"hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_27296_PI429285431	5.820885	P	6.4162626	P	0.661871199404147	0	lncRNA	28854-1_{1..357}	n324448|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041579|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041579|-1.3248900|-0.4024550	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324448|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041579|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041579|-1.3248900|-0.4024550	chr6	 98262355	 98262711	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8899_PI429285431	6.954377	P	7.0944457	P	0.907475940999665	0	lncRNA	10434-1_{1..2259}	lnc-KIAA1147-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1147-2:2	chr7	141437998	141440256	-	lnc-KIAA1147-2	lnc-KIAA1147-2:2	ENSG00000228775	RP5-894A10.5	WEE2	"hg19_refFlat_WEE2:range=chr7:141408559-1414301205'pad=0,hg19_refFlat_WEE2:range=chr7:141408559-1414301205'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80chr7:141427998-141431071"	NA	inter
CUST_12530_PI429285431	1.3255066	A	1.1477965	A	1.13108715554658	0	lncRNA	14141-1_{1..380}	lnc-MOGAT1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MOGAT1-1:2	chr2	223641938	223642317	+	lnc-MOGAT1-1	lnc-MOGAT1-1:2	XLOC_001880	linc-ACSL3	NA	NA	NA	inter
CUST_41066_PI429285431	0.92237514	A	1.051309	A	0.914507013888448	0	lncRNA	41733-1_{1..65}	ENST00000408549 ncrna:miRNA chromosome:GRCh37:15:78330873:78330937:1 gene:ENSG00000221476 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408549 ncrna:miRNA chromosome:GRCh37:15:78330873:78330937:1 gene:ENSG00000221476 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 78330873	 78330937	+	ENSG00000221476	ENST00000408549	NA	NA	TBC1D2B	NA	chr15:78320873-78340937	inner
CUST_38693_PI429285431	9.371423	P	9.890172	P	0.697976805462514	0	lncRNA	39689-1_{1..1589}	n384089|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zrz.1||4.9207900|-0.1174072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384089|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zrz.1||4.9207900|-0.1174072	chr22	 20377965	 20379553	+	NA	NA	NA	NA	TMEM191B	NA	chr22:20367965-20380440	inner
CUST_17800_PI429285431	4.4698286	P	4.8270764	P	0.780652394775078	0	lncRNA	19533-1_{1..237}	lnc-C21orf67-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C21orf67-4:3	chr21	 46420306	 46420542	-	lnc-C21orf67-4	lnc-C21orf67-4:3	XLOC_014121	linc-ITGB2-3	NA	NA	NA	inter
CUST_34368_PI429285431	0.924795	A	1.0326025	A	0.927997291661676	0	lncRNA	35855-1_{1..1415}	n341236|AF131786|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3704|NULL|-0.9283500|-0.3496801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341236|AF131786|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3704|NULL|-0.9283500|-0.3496801	chr7	 42940870	 42942284	-	NA	NA	NA	NA	C7orf25	NA	chr7:42948872-42951689	inter
CUST_14163_PI429285431	4.0269175	P	5.460087	P	0.370316439045781	0	lncRNA	15814-1_{1..1638}	lnc-SOD2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOD2-2:1	chr6	160015284	160016921	-	lnc-SOD2-2	lnc-SOD2-2:1	XLOC_005900	linc-TAGAP-1	NA	NA	NA	inter
CUST_42522_PI429285431	1.0843251	A	0.92274797	A	1.1185092054656	0	lncRNA	45314-1_{1..153}	ENST00000365110 ncrna:snoRNA chromosome:GRCh37:11:4777875:4778027:1 gene:ENSG00000201980 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365110 ncrna:snoRNA chromosome:GRCh37:11:4777875:4778027:1 gene:ENSG00000201980 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	  4777875	  4778027	+	ENSG00000201980	ENST00000365110	NA	NA	NA	NA	NA	inter
CUST_6830_PI429285431	5.382635	P	5.156296	P	1.16986252242017	0	lncRNA	6778-1_{1..1600}	"transcript_id ""ENST00000456917.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456917.1"" | genecode_v17"	chr21	 26934221	 26935820	+	ENSG00000234883.1	ENST00000456917.1	MIR155HG	MIR155HG-001	NA	NA	NA	inter
CUST_7233_PI429285431	0.9323682	A	0.9221479	A	1.00710932423573	0	lncRNA	7804-1_{1..304}	"transcript_id ""ENST00000516888.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516888.1"" | genecode_v17"	chr6	 87792951	 87793254	+	ENSG00000252697.1	ENST00000516888.1	RN7SKP209	RN7SKP209-201	CGA	NA	chr6:87795222-87803254	inter
CUST_36054_PI429285431	1.3935449	A	1.3513017	A	1.02971365112948	0	lncRNA	37369-1_{1..2968}	n344651|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_199|NULL|-1.4735300|-0.3119878	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n344651|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_199|NULL|-1.4735300|-0.3119878	chr2	111964137	111967104	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51457_PI429285431	3.8205001	P	3.9204724	P	0.933050906107281	0	lncRNA	55034-1_{1..1312}	hg19_lincRNAsTranscripts_TCONS_l2_00010459 range=chr16:33110462-33120784 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010459 range=chr16:33110462-33120784 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 33110462	 33111773	-	NA	NA	NA	NA	LOC653550	NA	chr16:33100462-33130784	inter
CUST_343_PI429285431	2.547745	A	2.4209669	A	1.09185259568157	0	lncRNA	336-1_{1..566}	"transcript_id ""ENST00000595309.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595309.1"" | genecode_v17"	chr1	106132300	106132865	-	ENSG00000230768.2	ENST00000595309.1	RP11-251P6.1	RP11-251P6.1-005	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80"	NA	inter
CUST_19011_PI429285431	4.7818465	P	5.197488	P	0.749686069672146	0	lncRNA	20701-1_{1..738}	lnc-CENPP-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CENPP-3:2	chr9	 94910204	 94910941	+	lnc-CENPP-3	lnc-CENPP-3:2	ENSG00000225511	C9orf44	NA	NA	NA	inter
CUST_15291_PI429285431	1.866655	A	1.5889342	A	1.21227818817027	0	lncRNA	16968-1_{1..1555}	lnc-CA7-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CA7-3:1	chr16	 66929494	 66931048	+	lnc-CA7-3	lnc-CA7-3:1	XLOC_011758	linc-CES2-2	PDP2	NA	chr16:66919494-66925004	inter
CUST_31217_PI429285431	7.2930756	P	5.5072846	P	3.44807462903647	0	lncRNA	33008-2_{3001..3411}	n337663|AK056476|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|43|NULL|-0.5890090|-0.2475546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337663|AK056476|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|43|NULL|-0.5890090|-0.2475546	chrX	 41377190	 41377600	-	NA	NA	NA	NA	CASK	NA	chrX:41374187-41387611	inner
CUST_29277_PI429285431	5.766009	P	5.515465	P	1.18965561634009	0	lncRNA	31028-1_{1..217}	n332386|AM991282|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500228|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500228|-0.8298840|-0.1937941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332386|AM991282|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500228|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500228|-0.8298840|-0.1937941	chr18	 45567404	 45567620	-	NA	NA	NA	NA	ZBTB7C	NA	chr18:45557404-45663680	inner
CUST_10917_PI429285431	7.4405074	P	7.558093	P	0.921728905765352	0	lncRNA	12461-1_{1..347}	lnc-CCND1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCND1-1:1	chr11	 69681818	 69682164	+	lnc-CCND1-1	lnc-CCND1-1:1	XLOC_009195	linc-ANO1-3	NA	NA	NA	inter
CUST_2719_PI429285431	1.0434949	A	1.0422297	A	1.0008773544633	0	lncRNA	2704-1_{1..934}	"transcript_id ""ENST00000419800.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419800.1"" | genecode_v17"	chr6	169434292	169435225	-	ENSG00000229720.1	ENST00000419800.1	RP3-495K2.2	RP3-495K2.2-001	NA	NA	NA	inter
CUST_25266_PI429285431	1.0155983	A	0.97927994	A	1.02549350891962	0	lncRNA	26796-1_{1..411}	lnc-SSTR4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SSTR4-1:1	chr20	 23019693	 23020103	+	lnc-SSTR4-1	lnc-SSTR4-1:1	ENSG00000234646.1	RP4-753D10.3	SSTR4	NA	chr20:23009693-23017314	inter
CUST_28777_PI429285431	0.89780504	A	0.90055126	A	0.998098275922873	0	lncRNA	30484-1_{1..2860}	n326183|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092696|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092696|-1.0370900|-0.3511656	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326183|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092696|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092696|-1.0370900|-0.3511656	chr1	232730259	232733118	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46323_PI429285431	3.3859727	P	3.127077	P	1.19656245432077	0	lncRNA	50552-1_{1..2457}	"gi|262072983|ref|NR_029435.1| Homo sapiens uncharacterized LOC379025 (FLJ31306), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|262072983|ref|NR_029435.1| Homo sapiens uncharacterized LOC379025 (FLJ31306), transcript variant 2, non-coding RNA"	Chr14	 58732083	 58734539	-	379025	NR_029435.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10"	NA	inter
CUST_17314_PI429285431	0.9205115	A	1.1334099	A	0.862802104165912	0	lncRNA	19032-1_{1..249}	lnc-GATA3-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GATA3-9:1	chr10	  9406998	  9407246	+	lnc-GATA3-9	lnc-GATA3-9:1	XLOC_008388	linc-CELF2-3	NA	NA	NA	inter
CUST_8905_PI429285431	1.0513525	A	1.1673088	A	0.922770443437926	0	lncRNA	10441-1_{1..2277}	lnc-C6orf201-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C6orf201-2:1	chr6	  4155715	  4157991	+	lnc-C6orf201-2	lnc-C6orf201-2:1	ENSG00000234817	RP3-400B16.1	NA	NA	NA	inter
CUST_46811_PI429285431	0.94775593	A	1.2347282	A	0.819620361385572	0	lncRNA	50956-1_{1..3000}	"gi|336391096|ref|NR_038847.1| Homo sapiens long intergenic non-protein coding RNA 672 (LINC00672), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|336391096|ref|NR_038847.1| Homo sapiens long intergenic non-protein coding RNA 672 (LINC00672), non-coding RNA"	Chr17	 37081421	 37084420	+	100505576	NR_038847.1	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70"	NA	inter
CUST_39852_PI429285431	5.636139	P	5.7285433	P	0.93795830678846	0	lncRNA	40751-1_{1..1314}	n406481|NR_023847|lncRNA|Homosapiens||RefGeneNoncode|NR_023847||-1.1210100|-0.3679171	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406481|NR_023847|lncRNA|Homosapiens||RefGeneNoncode|NR_023847||-1.1210100|-0.3679171	chr19	 57323847	 57325160	+	NA	NA	NA	NA	ZIM2	"hg19_refFlat_PEG3:range=chr19:57325043-573356455'pad=0,hg19_refFlat_PEG3:range=chr19:57325043-573356455'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_PEG3:range=chr19:57325043-573360235'pad=0,hg19_refFlat_PEG3:range=chr19:57325043-573360235'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10chr19:57313847-57335161"	NA	inner
CUST_10516_PI429285431	1.843328	A	2.693503	A	0.554717444307044	0	lncRNA	12044-1_{1..1146}	lnc-PSMC5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PSMC5-1:1	chr17	 61978434	 61979579	+	lnc-PSMC5-1	lnc-PSMC5-1:1	XLOC_012275	linc-C17orf72	CSHL1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40chr17:61986965-61988618"	NA	inter
LNCA_21_P0008976	1.0435973	A	1.0037886	A	1.02797750877157	0	lncRNA	TCONS_00024480	NA	NA	NA	NA	XLOC_011797	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011797), lincRNA [TCONS_00024480]"	chr16:79841337-79841396	hs|16q23.2	Agilent_HUMAN_G3V2	TCONS_00024480	TCONS_00024480	chr16	 79841337	 79841396	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50510_PI429285431	1.3575352	A	0.9136754	A	1.36023865903092	0	lncRNA	54206-1_{1..1174}	hg19_lincRNAsTranscripts_TCONS_l2_00030586 range=chrX:118940398-118956388 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030586 range=chrX:118940398-118956388 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	118940398	118941571	-	NA	NA	NA	NA	UPF3B	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chrX:118930398-118966388"	NA	inter
CUST_18156_PI429285431	1.3754897	A	1.1529298	A	1.16680210978548	0	lncRNA	19891-1_{1..574}	lnc-IL6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL6-2:2	chr7	 22896592	 22897165	+	lnc-IL6-2	lnc-IL6-2:2	ENSG00000228649	AC005682.5	NA	NA	NA	inter
CUST_52060_PI429285431	1.601629	A	1.7191389	A	0.921777271294315	0	lncRNA	55591-1_{1..609}	hg19_lincRNAsTranscripts_TCONS_l2_00017847 range=chr22:16101370-16192974 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017847 range=chr22:16101370-16192974 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 16101370	 16101978	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26949_PI429285431	8.360465	P	8.413104	P	0.964171038347971	0	lncRNA	28470-1_{1..467}	n324030|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053050|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053050|-1.0667900|-0.1711545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324030|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053050|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053050|-1.0667900|-0.1711545	chr9	 93949694	 93950160	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007055	1.240265	A	1.0776464	A	1.1193169398198	0	lncRNA	TCONS_00018704	NA	NA	NA	NA	XLOC_008434	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008434), lincRNA [TCONS_00018704]"	chr10:30248968-30249027	hs|10p11.23	Agilent_HUMAN_G3V2	TCONS_00018704	TCONS_00018704	chr10	 30248968	 30249027	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_704_PI429285431	3.6856275	P	2.7357805	A	1.93166779068396	0	lncRNA	697-1_{1..913}	"transcript_id ""ENST00000592365.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592365.1"" | genecode_v17"	chr2	  6775252	  6776164	-	ENSG00000236172.2	ENST00000592365.1	AC097517.2	AC097517.2-012	NA	NA	NA	inter
CUST_23135_PI429285431	1.7674716	A	1.960998	A	0.874465638071732	0	lncRNA	24706-1_{1..302}	lnc-AKR1C1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AKR1C1-2:2	chr10	  5039432	  5039733	+	lnc-AKR1C1-2	lnc-AKR1C1-2:2	ENSG00000224251.1	RP11-499O7.7	AKR1C2	NA	chr10:5031965-5049572	inner
CUST_35468_PI429285431	5.811988	P	5.1622114	P	1.56892523035378	0	lncRNA	36873-2_{3001..5638}	n342553|D83784|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5052|NULL|1.9121900|-0.2184661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342553|D83784|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5052|NULL|1.9121900|-0.2184661	chr20	 30783306	 30785943	-	NA	NA	NA	NA	POFUT1	NA	chr20:30795696-30805529	inner
CUST_35397_PI429285431	0.9149638	A	1.0865176	A	0.887885902177352	0	lncRNA	36808-1_{1..1658}	n342457|AF098968|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4950|NULL|-0.0520283|-0.1901678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342457|AF098968|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4950|NULL|-0.0520283|-0.1901678	chr16	  3178820	  3180477	-	NA	NA	NA	NA	CASP14L	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90chr16:3194244-3194883"	NA	inter
CUST_10477_PI429285431	2.9103258	A	3.8025255	P	0.538791986969142	0	lncRNA	12004-2_{3001..6000}	lnc-RAB6C-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB6C-3:1	chr2	130349796	130352795	+	lnc-RAB6C-3	lnc-RAB6C-3:1	XLOC_001668	linc-RAB6C-3	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.64"	NA	inter
CUST_52139_PI429285431	7.90463	P	8.104123	P	0.870856550830826	0	lncRNA	55663-1_{1..1425}	hg19_lincRNAsTranscripts_TCONS_l2_00017899 range=chr22:20958200-20960593 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017899 range=chr22:20958200-20960593 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 20958200	 20959624	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10661_PI429285431	1.1774619	A	0.9154817	A	1.19912345653113	0	lncRNA	12194-1_{1..848}	lnc-SSTR4-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SSTR4-5:1	chr20	 22598991	 22599838	+	lnc-SSTR4-5	lnc-SSTR4-5:1	XLOC_013485	linc-SSTR4-4	NA	NA	NA	inter
CUST_10960_PI429285431	4.796165	P	5.0029755	P	0.866450658424868	0	lncRNA	12502-1_{1..712}	lnc-IKZF2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IKZF2-2:1	chr2	214103236	214103947	-	lnc-IKZF2-2	lnc-IKZF2-2:1	XLOC_002477	linc-IKZF2-2	NA	NA	NA	inter
CUST_39127_PI429285431	6.7213373	P	6.907891	P	0.878702254134034	0	lncRNA	40103-1_{1..2572}	n385717|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004cgv.3||-0.6721160|-0.1793775	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385717|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004cgv.3||-0.6721160|-0.1793775	chr9	138899381	138901952	-	NA	NA	NA	NA	NACC2	NA	chr9:138898383-138911953	inner
CUST_47747_PI429285431	0.977207	A	2.460457	A	0.357682143042875	0	lncRNA	51693-1_{1..3000}	"gi|385137069|ref|NR_047607.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 37, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|385137069|ref|NR_047607.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 37, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047607.1	NA	NA	NA	NA	NA	inter
CUST_20747_PI429285431	7.0891275	P	7.7170277	P	0.647117590756932	0	lncRNA	22381-1_{1..287}	lnc-SOX15-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SOX15-1:4	chr17	  7486194	  7486480	-	lnc-SOX15-1	lnc-SOX15-1:4	ENSG00000233223.2	AC113189.5	FXR2	NA	chr17:7494548-7496328	inter
CUST_23226_PI429285431	4.3157415	P	4.6983376	P	0.767056046435921	0	lncRNA	24798-1_{1..327}	lnc-ZBTB4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZBTB4-2:1	chr17	  7340594	  7340920	-	lnc-ZBTB4-2	lnc-ZBTB4-2:1	ENSG00000262624.1	RP11-104H15.9	TMEM102	"hg19_refFlat_TMEM102:range=chr17:7339191-73408255'pad=0,hg19_refFlat_TMEM102:range=chr17:7339191-73408255'pad=0 3'pad=0 strand=+ repeatMasking=none,-111.60chr17:7338762-7340998"	NA	inner
CUST_6248_PI429285431	0.9952264	A	0.933368	A	1.04380947286907	0	lncRNA	6173-1_{1..374}	"transcript_id ""ENST00000584078.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584078.1"" | genecode_v17"	chr18	 68667713	 68668086	-	ENSG00000265781.1	ENST00000584078.1	RP11-384E22.1	RP11-384E22.1-001	NA	NA	NA	inter
CUST_14368_PI429285431	2.7286766	A	2.421565	A	1.23722818105034	0	lncRNA	16028-1_{1..1007}	lnc-LRRC38-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-LRRC38-1:1	chr1	 13986072	 13987078	-	lnc-LRRC38-1	lnc-LRRC38-1:1	XLOC_000707	linc-LRRC38-9	NA	NA	NA	inter
CUST_31417_PI429285431	2.100027	A	1.940697	A	1.11676838077137	0	lncRNA	33189-1_{1..2142}	n337882|AK054827|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|265|NULL|-1.1045600|-0.2592532	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337882|AK054827|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|265|NULL|-1.1045600|-0.2592532	chr15	 66319581	 66321722	-	NA	NA	NA	NA	MEGF11	NA	chr15:66309581-66331724	inner
CUST_21818_PI429285431	0.9310131	A	0.9407921	A	0.993244634486666	0	lncRNA	23428-1_{1..1037}	lnc-AP1S2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP1S2-2:1	chrX	 16188739	 16189775	-	lnc-AP1S2-2	lnc-AP1S2-2:1	ENSG00000238178.1	RP11-431J24.2	MAGEB17	NA	chrX:16185604-16189516	inter
CUST_31839_PI429285431	9.655467	P	9.26947	P	1.30676253655404	0	lncRNA	33573-1_{1..200}	n338385|Y12017|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|781|NULL|-1.2341900|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338385|Y12017|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|781|NULL|-1.2341900|-1.0000000	chr14	 73569373	 73569572	-	NA	NA	NA	NA	RBM25	NA	chr14:73559373-73579573	inner
CUST_44921_PI429285431	0.926032	A	1.3637661	A	0.738293263535732	0	lncRNA	49437-1_{1..914}	"gi|310119951|ref|XR_108768.1| PREDICTED: Homo sapiens uncharacterized LOC100506725, transcript variant 2 (LOC100506725), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310119951|ref|XR_108768.1| PREDICTED: Homo sapiens uncharacterized LOC100506725, transcript variant 2 (LOC100506725), misc_RNA"	Chr7	 35755920	 35756833	+	100506725	XR_108768.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0004701	0.9870852	A	0.92630893	A	1.04302683066151	0	lncRNA	ENST00000448126	NA	NA	NA	NA	XLOC_005527	NA	ENST00000448126	NA	NA	"BROAD Institute lincRNA (XLOC_005527), lincRNA [TCONS_00011406]"	chr6:161119325-161119384	hs|6q26	Agilent_HUMAN_G3V2	ENST00000448126	ENST00000448126	chr6	161119325	161119384	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13392_PI429285431	1.2893467	A	0.9934168	A	1.22767603015725	0	lncRNA	15029-1_{1..475}	lnc-NDN-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDN-4:1	chr15	 24630463	 24630937	-	lnc-NDN-4	lnc-NDN-4:1	XLOC_011401	linc-NDN-2	NA	NA	NA	inter
CUST_27207_PI429285431	3.0378003	A	2.7318254	A	1.2362537523982	0	lncRNA	28749-1_{1..562}	n324339|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042629|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042629|-1.3195000|-0.2140038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324339|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042629|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042629|-1.3195000|-0.2140038	chr6	149606127	149606688	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28919_PI429285431	0.9144185	A	0.9136171	A	1.00055564246261	0	lncRNA	30636-1_{1..1801}	n326344|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000083820|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000083820|-1.0494900|-0.3977807	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326344|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000083820|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000083820|-1.0494900|-0.3977807	chr1	166636690	166638490	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40"	NA	inter
CUST_21249_PI429285431	0.925284	A	0.92301875	A	1.00157138498429	0	lncRNA	22875-1_{1..914}	lnc-HECA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HECA-1:1	chr6	139607982	139608895	+	lnc-HECA-1	lnc-HECA-1:1	ENSG00000226571.1	RP11-445F6.2	TXLNB	NA	chr6:139597982-139613208	inner
CUST_8496_PI429285431	3.553093	P	3.9278991	P	0.771209057191124	0	lncRNA	10060-1_{1..3000}	lnc-RP11-630A13.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-630A13.2.1-1:1	chr4	 57491996	 57494995	+	lnc-RP11-630A13.2.1-1	lnc-RP11-630A13.2.1-1:1	ENSG00000250128	XLOC_003546	NA	"hg19_refFlat_LOC100130451:range=chr2:214142441-2141488025'pad=0,hg19_refFlat_LOC100130451:range=chr2:214142441-2141488025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
LNCA_21_P0004945	0.9724017	A	0.9203696	A	1.03672416790123	0	lncRNA	TCONS_00011961	NA	NA	NA	NA	XLOC_005475	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005475), lincRNA [TCONS_00011961]"	chr6:137739490-137739549	hs|6q23.3	Agilent_HUMAN_G3V2	TCONS_00011961	TCONS_00011961	chr6	137739490	137739549	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50443_PI429285431	0.9203063	A	1.2088861	A	0.818707604008899	0	lncRNA	54147-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030495 range=chrX:53187817-53200365 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030495 range=chrX:53187817-53200365 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 53187817	 53190816	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF649:range=chr19:52393871-524033605'pad=0,hg19_refFlat_ZNF649:range=chr19:52393871-524033605'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00"	NA	inter
CUST_10457_PI429285431	0.91349906	A	0.9044542	A	1.00628911315118	0	lncRNA	11983-1_{1..922}	lnc-HECA-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HECA-3:5	chr6	140414128	140415049	+	lnc-HECA-3	lnc-HECA-3:5	XLOC_005485	linc-VTA1-2	NA	NA	NA	inter
CUST_35607_PI429285431	3.9583952	P	4.1967773	P	0.847695421463289	0	lncRNA	37020-1_{1..561}	n342744|AB126075|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5247|NULL|0.4466960|-0.0364939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342744|AB126075|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5247|NULL|0.4466960|-0.0364939	chr11	  1718424	  1718984	+	NA	NA	NA	NA	KRTAP5-6	NA	chr11:1718425-1718985	inner
CUST_50223_PI429285431	4.126334	P	4.3914022	P	0.832159395412076	0	lncRNA	53947-1_{1..1901}	hg19_lincRNAsTranscripts_TCONS_l2_00029325 range=chr9:67254274-67290242 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029325 range=chr9:67254274-67290242 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 67254274	 67256174	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47221_PI429285431	5.6477766	P	5.777905	P	0.91375012275992	0	lncRNA	51296-1_{1..1639}	"gi|333470688|ref|NR_038239.1| Homo sapiens long intergenic non-protein coding RNA 658 (LINC00658), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|333470688|ref|NR_038239.1| Homo sapiens long intergenic non-protein coding RNA 658 (LINC00658), transcript variant 1, non-coding RNA"	Chr20	  5412603	  5414241	-	100507629	NR_038239.1	NA	NA	NA	NA	NA	inter
CUST_2338_PI429285431	0.9429445	A	0.92157805	A	1.01492030744225	0	lncRNA	2330-1_{1..583}	"transcript_id ""ENST00000512105.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512105.1"" | genecode_v17"	chr5	121656986	121657568	-	ENSG00000249621.1	ENST00000512105.1	CTD-2544H17.1	CTD-2544H17.1-001	SNCAIP	NA	chr5:121647820-121669053	inner
CUST_4178_PI429285431	0.96710014	A	0.9136994	A	1.03770814259583	0	lncRNA	4136-1_{1..633}	"transcript_id ""ENST00000543778.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000543778.1"" | genecode_v17"	chr12	 20273914	 20274546	-	ENSG00000256499.1	ENST00000543778.1	CTC-465D4.1	CTC-465D4.1-001	NA	NA	NA	inter
CUST_49898_PI429285431	2.514541	A	2.2508895	A	1.20051339428879	0	lncRNA	53647-1_{1..1302}	hg19_lincRNAsTranscripts_TCONS_l2_00026712 range=chr7:76736265-76748885 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026712 range=chr7:76736265-76748885 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 76736265	 76737566	-	NA	NA	NA	NA	CCDC146	NA	chr7:76744671-76758885	inter
CUST_47623_PI429285431	11.873251	P	11.378539	P	1.40903944560947	0	lncRNA	51615-1_{1..1042}	"gi|296179419|ref|NR_033670.1| Homo sapiens armadillo repeat containing, X-linked 6 (ARMCX6), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|296179419|ref|NR_033670.1| Homo sapiens armadillo repeat containing, X-linked 6 (ARMCX6), transcript variant 5, non-coding RNA"	NW_004070883.1	   296793	   297834	-	54470	NR_033670.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012112	16.483152	P	16.521278	P	0.97391920609044	0	lncRNA	TCONS_l2_00016171	NA	NA	NA	NA	XLOC_l2_008560	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008560), lincRNA [TCONS_l2_00016171]"	chr20:18485441-18485738	hs|20p11.23	Agilent_HUMAN_G3V2	TCONS_l2_00016171	TCONS_l2_00016171	chr20	 18485441	 18485738	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29451_PI429285431	0.9080513	A	1.0377451	A	0.914025423923391	0	lncRNA	31208-1_{1..412}	n332853|AF075100|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066122|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066122|-1.3292200|-0.2856716	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332853|AF075100|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066122|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066122|-1.3292200|-0.2856716	chr13	 50613138	 50613549	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40"	NA	inter
CUST_18386_PI429285431	5.4346256	P	5.463576	P	0.980133111837174	0	lncRNA	20112-1_{1..807}	lnc-HSCB-1:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HSCB-1:16	chr22	 28381680	 28382486	+	lnc-HSCB-1	lnc-HSCB-1:16	ENSG00000235954	TTC28-AS1	TTC28	NA	chr22:28374002-28392217	inner
CUST_17695_PI429285431	1.4375937	A	0.9268414	A	1.42479296680019	0	lncRNA	19424-1_{1..818}	lnc-LRP5L-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LRP5L-2:5	chr22	 25960057	 25960874	-	lnc-LRP5L-2	lnc-LRP5L-2:5	XLOC_014323	linc-LRP5L-1	ADRBK2	NA	chr22:25960861-25970634	inter
CUST_10753_PI429285431	1.1244296	A	0.89921784	A	1.16894881526674	0	lncRNA	12289-1_{1..269}	lnc-FAM84B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM84B-3:1	chr8	127859120	127859388	-	lnc-FAM84B-3	lnc-FAM84B-3:1	XLOC_007212	linc-FAM84B-3	NA	NA	NA	inter
CUST_1849_PI429285431	0.96018624	A	1.3573939	A	0.759326540380859	0	lncRNA	1839-1_{1..735}	"transcript_id ""ENST00000416680.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416680.1"" | genecode_v17"	chr4	118235753	118236487	-	ENSG00000224932.1	ENST00000416680.1	AC107399.2	AC107399.2-001	NA	NA	NA	inter
CUST_47475_PI429285431	0.9150576	A	0.9026753	A	1.00861969378642	0	lncRNA	51498-1_{1..3000}	"gi|364023799|ref|NR_045649.1| Homo sapiens piwi-like 3 (Drosophila) (PIWIL3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|364023799|ref|NR_045649.1| Homo sapiens piwi-like 3 (Drosophila) (PIWIL3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_045649.1	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80"	NA	Unknown
CUST_25578_PI429285431	7.040261	P	7.225817	P	0.879310133429193	0	lncRNA	27108-1_{1..459}	lnc-SRGAP3-1:21	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRGAP3-1:21	chr3	  9431974	  9432432	-	lnc-SRGAP3-1	lnc-SRGAP3-1:21	ENSG00000206573.4	RP11-58B17.1	LOC100652926	NA	chr3:9435634-9438752	inter
CUST_50143_PI429285431	2.8988788	A	2.8613358	A	1.02636437456215	0	lncRNA	53868-2_{3001..3253}	hg19_lincRNAsTranscripts_TCONS_l2_00029161 range=chr9:100340-115953 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029161 range=chr9:100340-115953 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	   103340	   103592	-	NA	NA	NA	NA	CBWD1	NA	chr9:121038-125953	inter
LNCA_21_P0002366	2.4799814	A	3.9745634	P	0.35488364655428	0	lncRNA	TCONS_00004043	NA	NA	NA	NA	XLOC_001882	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001882), lincRNA [TCONS_00004043]"	chr2:224907072-224907131	hs|2q36.1	Agilent_HUMAN_G3V2	TCONS_00004043	TCONS_00004043	chr2	224907072	224907131	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47678_PI429285431	2.0050259	A	2.4774258	A	0.720764619611945	0	lncRNA	51659-1_{1..1642}	"gi|149944512|ref|NR_001536.2| Homo sapiens testis-specific transcript, Y-linked 2 (non-protein coding) (TTTY2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|149944512|ref|NR_001536.2| Homo sapiens testis-specific transcript, Y-linked 2 (non-protein coding) (TTTY2), non-coding RNA"	ChrY	  9573895	  9575536	+	60439	NR_001536.2	NA	NA	NA	NA	NA	inter
CUST_15760_PI429285431	3.0899959	A	3.2664242	A	0.8848910236136	0	lncRNA	17448-1_{1..519}	lnc-SYT4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYT4-1:1	chr18	 41871665	 41872183	-	lnc-SYT4-1	lnc-SYT4-1:1	XLOC_012830	linc-SYT4-2	NA	NA	NA	inter
CUST_22659_PI429285431	3.0532346	P	3.4469368	P	0.761173795113372	0	lncRNA	24243-1_{1..555}	lnc-DALRD3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DALRD3-2:2	chr3	 49021160	 49021714	-	lnc-DALRD3-2	lnc-DALRD3-2:2	ENSG00000235236.1	RP13-131K19.1	ARIH2	NA	chr3:49011160-49022974	inner
CUST_9468_PI429285431	1.6022534	A	1.7683985	A	0.891220856267094	0	lncRNA	10974-1_{1..649}	lnc-SPRY4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPRY4-1:1	chr5	141548130	141548778	-	lnc-SPRY4-1	lnc-SPRY4-1:1	XLOC_005036	linc-GNPDA1	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.21"	NA	inter
CUST_42664_PI429285431	1.834653	A	1.6954503	A	1.10129632038947	0	lncRNA	45569-1_{1..139}	ENST00000516528 ncrna:snoRNA chromosome:GRCh37:5:105882366:105882504:1 gene:ENSG00000252337 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516528 ncrna:snoRNA chromosome:GRCh37:5:105882366:105882504:1 gene:ENSG00000252337 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	105882366	105882504	+	ENSG00000252337	ENST00000516528	NA	NA	NA	NA	NA	inter
CUST_3274_PI429285431	0.9017978	A	1.0447829	A	0.905643336356988	0	lncRNA	3252-1_{1..730}	"transcript_id ""ENST00000519248.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519248.1"" | genecode_v17"	chr8	115294365	115295094	+	ENSG00000254339.1	ENST00000519248.1	RP11-267L5.1	RP11-267L5.1-002	NA	NA	NA	inter
CUST_43830_PI429285431	2.4971828	A	1.9818588	A	1.42931509883611	0	lncRNA	48554-1_{1..1776}	"gi|224586936|ref|NR_027252.1| Homo sapiens CYP1B1 antisense RNA 1 (CYP1B1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224586936|ref|NR_027252.1| Homo sapiens CYP1B1 antisense RNA 1 (CYP1B1-AS1), non-coding RNA"	Chr2	 38358247	 38360022	+	285154	NR_027252.1	NA	NA	NA	NA	NA	inter
CUST_45792_PI429285431	6.5247426	P	6.841316	P	0.802974790519958	0	lncRNA	50132-1_{1..1975}	"gi|375364518|ref|NR_046338.1| Homo sapiens PR domain containing 11 (PRDM11), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375364518|ref|NR_046338.1| Homo sapiens PR domain containing 11 (PRDM11), transcript variant 3, non-coding RNA"	Chr11	 45115564	 45117538	+	56981	NR_046338.1	NA	NA	NA	NA	NA	inter
CUST_4490_PI429285431	1.2273823	A	1.14536	A	1.05850075618765	0	lncRNA	4439-1_{1..548}	"transcript_id ""ENST00000542248.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000542248.1"" | genecode_v17"	chr12	127232602	127233149	-	ENSG00000256128.1	ENST00000542248.1	RP11-173C20.2	RP11-173C20.2-002	NA	NA	NA	inter
CUST_50914_PI429285431	3.3513803	P	3.8412764	P	0.712076378262912	0	lncRNA	54555-1_{1..990}	hg19_lincRNAsTranscripts_TCONS_l2_00006120 range=chr12:9549698-9553061 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006120 range=chr12:9549698-9553061 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  9549698	  9550687	-	NA	NA	NA	NA	LOC728715	NA	chr12:9549658-9555094	inter
LNCA_19_P00320746	0.924242	A	0.909668	A	1.01015312372407	0	lncRNA	ENST00000511029	NA	NA	NA	NA	XLOC_l2_011969	NA	ENST00000511029	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011969), lincRNA [TCONS_l2_00023691]"	chr5:25405045-25404986	hs|5p14.1	Agilent_HUMAN_G3V2	ENST00000511029	ENST00000511029	chr5	 25404986	 25405045	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2332_PI429285431	3.1107683	P	2.2609146	A	1.80231814749839	0	lncRNA	2324-1_{1..1114}	"transcript_id ""ENST00000511422.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511422.1"" | genecode_v17"	chr5	120116913	120118026	+	ENSG00000248927.1	ENST00000511422.1	CTD-2334D19.1	CTD-2334D19.1-001	NA	NA	NA	inter
CUST_49658_PI429285431	10.429823	P	10.282634	P	1.10740965098068	0	lncRNA	53439-1_{1..350}	hg19_lincRNAsTranscripts_TCONS_l2_00026880 range=chr7:128050311-128090500 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026880 range=chr7:128050311-128090500 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	128050311	128050660	-	NA	NA	NA	NA	C7orf68	NA	chr7:128083504-128098472	inter
CUST_41582_PI429285431	3.0099583	P	3.8592916	P	0.555041173083843	0	lncRNA	42904-1_{1..84}	ENST00000384816 ncrna:miRNA chromosome:GRCh37:7:99691183:99691266:-1 gene:ENSG00000207547 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384816 ncrna:miRNA chromosome:GRCh37:7:99691183:99691266:-1 gene:ENSG00000207547 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 99691183	 99691266	-	ENSG00000207547	ENST00000384816	NA	NA	MCM7	NA	chr7:99690404-99699427	inner
CUST_48586_PI429285431	0.92761517	A	0.9156011	A	1.00836228898137	0	lncRNA	52433-2_{3001..5513}	hg19_lincRNAsTranscripts_TCONS_l2_00014463 range=chr2:20786003-20793177 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014463 range=chr2:20786003-20793177 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 20789003	 20791515	-	NA	NA	NA	NA	HS1BP3	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr2:20776003-20803177"	NA	inter
CUST_11528_PI429285431	1.1133788	A	1.0076524	A	1.0760360405039	0	lncRNA	13099-1_{1..610}	lnc-GLT6D1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLT6D1-1:1	chr9	138471798	138472407	-	lnc-GLT6D1-1	lnc-GLT6D1-1:1	XLOC_007892	linc-C9orf116	GLT6D1	NA	chr9:138479852-138482027	inter
CUST_51189_PI429285431	0.90713894	A	0.89650804	A	1.0073959946182	0	lncRNA	54809-1_{1..863}	hg19_lincRNAsTranscripts_TCONS_l2_00008273 range=chr14:104755161-104756411 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008273 range=chr14:104755161-104756411 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr14	104755161	104756023	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4778_PI429285431	1.0766929	A	1.093942	A	0.988115025902957	0	lncRNA	4722-1_{1..584}	"transcript_id ""ENST00000557019.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557019.1"" | genecode_v17"	chr14	 39308050	 39308633	-	ENSG00000259070.1	ENST00000557019.1	LINC00639	LINC00639-004	NA	NA	NA	inter
CUST_28863_PI429285431	0.8890284	A	1.816771	A	0.525680235986832	0	lncRNA	30576-1_{1..621}	n326283|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086414|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086414|-1.1971100|-0.4097297	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326283|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086414|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086414|-1.1971100|-0.4097297	chr1	194280748	194281368	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23278_PI429285431	0.89292383	A	1.1465278	A	0.838798408940558	0	lncRNA	24849-1_{1..829}	lnc-RP11-124K4.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-124K4.2.1-1:1	chr16	  6825734	  6826562	+	lnc-RP11-124K4.2.1-1	lnc-RP11-124K4.2.1-1:1	ENSG00000260411.1	RP11-420N3.2	RBFOX1	NA	chr16:6815734-6836015	inner
CUST_26193_PI429285431	2.0698128	A	2.6529243	A	0.667522559565425	0	lncRNA	27704-1_{1..580}	lnc-ZDHHC5-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZDHHC5-1:4	chr11	 57417771	 57418350	+	lnc-ZDHHC5-1	lnc-ZDHHC5-1:4	ENSG00000254602.1	AP000662.4	CLP1	NA	chr11:57425216-57428248	inter
CUST_38340_PI429285431	0.91059065	A	0.924101	A	0.990679050871642	0	lncRNA	39386-1_{1..1600}	n382069|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vic.1||-1.2611100|-0.3304943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382069|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vic.1||-1.2611100|-0.3304943	chr13	 61491134	 61492733	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13061_PI429285431	10.875883	P	11.111067	P	0.849576638004818	0	lncRNA	14688-1_{1..735}	lnc-OR51E1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR51E1-1:1	chr11	  4693251	  4693985	+	lnc-OR51E1-1	lnc-OR51E1-1:1	XLOC_009038	linc-OR51F2-2	OR51E2	NA	chr11:4701401-4703462	inter
CUST_7003_PI429285431	4.1241074	P	4.5510864	P	0.743817708216546	0	lncRNA	6950-1_{1..219}	"transcript_id ""ENST00000449941.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449941.1"" | genecode_v17"	chr22	 48256420	 48256638	+	ENSG00000230345.1	ENST00000449941.1	RP13-455A7.1	RP13-455A7.1-001	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70"	NA	inter
CUST_26407_PI429285431	1.5113242	A	1.5387604	A	0.981162363776212	0	lncRNA	27914-1_{1..596}	lnc-SYN3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SYN3-3:1	chr22	 33617588	 33618183	-	lnc-SYN3-3	lnc-SYN3-3:1	ENSG00000244472.1	RP1-302D9.4	NA	NA	NA	inter
LNCA_21_P0008568	0.9259384	A	0.91566515	A	1.00714628798469	0	lncRNA	XR_109178	XR_109178	XR_109178	NA	Hs.636453	LOC100505534	uncharacterized LOC100505534	NA	THC2535983	NA	"PREDICTED: Homo sapiens hypothetical LOC100505534 (LOC100505534), miscRNA [XR_109178]"	chr15:40216535-40216594	hs|15q15.1	Agilent_HUMAN_G3V2	XR_109178	XR_109178	chr15	 40216535	 40216594	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012509	0.9262165	A	0.9198704	A	1.00440847016227	0	lncRNA	ENST00000498616	NA	NA	NA	NA	XLOC_l2_009979	NA	ENST00000498616	THC2731031	NA	"BROAD Institute lincRNA (XLOC_l2_009979), lincRNA [TCONS_l2_00018976]"	chr3:164924897-165100591	hs|3q26.1	Agilent_HUMAN_G3V2	ENST00000498616	ENST00000498616	chr3	164924897	165100591	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18778_PI429285431	5.052756	P	5.0084944	P	1.03115527844886	0	lncRNA	20474-1_{1..564}	lnc-AL117340.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AL117340.1-2:2	chr10	 31607825	 31608388	-	lnc-AL117340.1-2	lnc-AL117340.1-2:2	ENSG00000237036	ZEB1-AS1	ZEB1	NA	chr10:31608101-31617964	inter
CUST_33275_PI429285431	1.2156639	A	1.3132443	A	0.934599130427909	0	lncRNA	34860-1_{1..3000}	n339983|AK126494|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2436|NULL|-1.0113300|-0.3524037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339983|AK126494|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2436|NULL|-1.0113300|-0.3524037	chr4	 47552734	 47555733	+	NA	NA	NA	NA	ATP10D	NA	chr4:47542734-47566650	inner
CUST_38473_PI429285431	4.778184	P	4.7998347	P	0.985104923993631	0	lncRNA	39492-1_{1..3000}	n382958|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dth.2||3.3886900|-0.3512489	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382958|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dth.2||3.3886900|-0.3512489	chr16	 29535925	 29538924	-	NA	NA	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30"	NA	inter
LNCA_21_P0002621	0.9276188	A	0.91830564	A	1.00647627153734	0	lncRNA	TCONS_00004951	NA	NA	NA	NA	XLOC_001765	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001765), lincRNA [TCONS_00004951]"	chr2:177520645-177520704	hs|2q31.1	Agilent_HUMAN_G3V2	TCONS_00004951	TCONS_00004951	chr2	177520645	177520704	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50532_PI429285431	4.281437	P	4.2862253	P	0.996686505136208	0	lncRNA	54227-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030390 range=chrX:149113093-149129134 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030390 range=chrX:149113093-149129134 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	149113093	149116092	+	NA	NA	NA	NA	CXorf40B	NA	chrX:149103093-149106716	inter
CUST_27121_PI429285431	0.90507084	A	1.001803	A	0.935148794386371	0	lncRNA	28655-1_{1..589}	n324235|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327603|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327603|-0.8595660|-0.4832841	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324235|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327603|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327603|-0.8595660|-0.4832841	chr7	 17440625	 17441213	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19354_PI429285431	0.9702344	A	0.9682858	A	1.00135157915697	0	lncRNA	21019-2_{3001..6000}	lnc-AC142381.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AC142381.1-1:1	chr16	 32144463	 32147462	+	lnc-AC142381.1-1	lnc-AC142381.1-1:1	ENSG00000260544.1	RP11-1166P10.9	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_6438_PI429285431	1.34584	A	1.7118173	A	0.775943063209152	0	lncRNA	6379-1_{1..567}	"transcript_id ""ENST00000585364.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585364.1"" | genecode_v17"	chr19	 31341882	 31342448	+	ENSG00000267081.1	ENST00000585364.1	CTC-400I9.2	CTC-400I9.2-001	NA	NA	NA	inter
CUST_27620_PI429285431	1.0602685	A	1.3869112	A	0.797389934865593	0	lncRNA	29198-1_{1..443}	n324824|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171734|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171734|-1.1600700|-0.3130806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324824|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171734|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171734|-1.1600700|-0.3130806	chr21	 28965173	 28965615	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42556_PI429285431	0.90279	A	0.8982317	A	1.00316456950437	0	lncRNA	45376-1_{1..70}	ENST00000517152 ncrna:snoRNA chromosome:GRCh37:X:55930020:55930089:-1 gene:ENSG00000252961 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517152 ncrna:snoRNA chromosome:GRCh37:X:55930020:55930089:-1 gene:ENSG00000252961 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	 55930020	 55930089	-	ENSG00000252961	ENST00000517152	NA	NA	NA	NA	NA	inter
LNCA_21_P0006476	0.93282074	A	0.9235627	A	1.00643781856513	0	lncRNA	TCONS_00017120	NA	NA	NA	NA	XLOC_007913	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007913), lincRNA [TCONS_00017120]"	chrX:1691692-1704585	hs|Xp22.33	Agilent_HUMAN_G3V2	TCONS_00017120	TCONS_00017120	chrX	  1691692	  1704585	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28420_PI429285431	2.9977417	P	2.4930673	A	1.41880311220286	0	lncRNA	30080-1_{1..858}	n325743|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044739|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044739|0.4496690|-0.2713654	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325743|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044739|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044739|0.4496690|-0.2713654	chr13	 43872486	 43873343	-	NA	NA	NA	NA	ENOX1	NA	chr13:43862486-43888002	inner
LNCA_21_P0004205	3.736715	P	4.78988	P	0.481909785040981	0	lncRNA	TCONS_00010607	NA	NA	NA	NA	XLOC_004256	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004256), lincRNA [TCONS_00010607]"	chr5:2934141-2934200	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00010607	TCONS_00010607	chr5	  2934141	  2934200	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44323_PI429285431	7.48718	P	7.65086	P	0.892744966683911	0	lncRNA	48955-1_{1..1560}	"gi|195539381|ref|NR_003266.2| Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene (LOC220729), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|195539381|ref|NR_003266.2| Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene (LOC220729), non-coding RNA"	Chr3	197340898	197342457	-	220729	NR_003266.2	NA	NA	NA	NA	NA	inter
CUST_42011_PI429285431	9.762007	P	9.815595	P	0.96353701839641	0	lncRNA	43863-1_{1..78}	ENST00000411067 ncrna:miRNA chromosome:GRCh37:18:20716399:20716476:-1 gene:ENSG00000222999 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000411067 ncrna:miRNA chromosome:GRCh37:18:20716399:20716476:-1 gene:ENSG00000222999 gene_biotype:miRNA transcript_biotype:miRNA	chr18	 20716399	 20716476	-	ENSG00000222999	ENST00000411067	NA	NA	CABLES1	"hg19_refFlat_CABLES1:range=chr18:20715727-208373315'pad=0,hg19_refFlat_CABLES1:range=chr18:20715727-208373315'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.60chr18:20714528-20726476"	NA	inner
CUST_20309_PI429285431	0.93997556	A	1.7606748	A	0.566167468221043	0	lncRNA	21952-1_{1..514}	lnc-KTN1-AS1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KTN1-AS1-1:7	chr14	 56260015	 56260528	-	lnc-KTN1-AS1-1	lnc-KTN1-AS1-1:7	ENSG00000258791.2	LINC00520	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60"	NA	inter
CUST_48224_PI429285431	3.3149438	A	2.4423914	A	1.83089924331554	0	lncRNA	52087-1_{1..329}	hg19_lincRNAsTranscripts_TCONS_l2_00001492 range=chr1:142805370-142891006 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001492 range=chr1:142805370-142891006 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	142805370	142805698	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007343	0.9711009	A	0.93091637	A	1.0282453374554	0	lncRNA	TCONS_00019620	NA	NA	NA	NA	XLOC_009419	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009419), lincRNA [TCONS_00019620]"	chr11:39115382-39115323	hs|11p12	Agilent_HUMAN_G3V2	TCONS_00019620	TCONS_00019620	chr11	 39115323	 39115382	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6111_PI429285431	6.085256	P	7.363432	P	0.412316471140857	0	lncRNA	6037-1_{1..669}	"transcript_id ""ENST00000584373.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584373.1"" | genecode_v17"	chr18	 19746940	 19747608	-	ENSG00000266010.1	ENST00000584373.1	RP11-627G18.3	RP11-627G18.3-002	GATA6	NA	chr18:19749416-19757903	inter
CUST_23170_PI429285431	0.9063127	A	0.89878595	A	1.00523077854322	0	lncRNA	24741-1_{1..453}	lnc-C8orf17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C8orf17-1:1	chr8	140928642	140929094	+	lnc-C8orf17-1	lnc-C8orf17-1:1	ENSG00000253574.1	RP11-284H18.1	TRAPPC9	NA	chr8:140918642-140938864	inner
CUST_19751_PI429285431	5.8013515	P	5.782346	P	1.01326076301535	0	lncRNA	21409-1_{1..1656}	lnc-ZG16-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZG16-2:1	chr16	 29758104	 29759759	+	lnc-ZG16-2	lnc-ZG16-2:1	ENSG00000260719.1	AC009133.17	C16orf54	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-25.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30chr16:29753784-29757340"	NA	inter
CUST_27034_PI429285431	0.92988443	A	1.2018878	A	0.82816872680799	0	lncRNA	28565-1_{1..1427}	n324140|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051950|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051950|-1.1806600|-0.2900536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324140|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051950|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051950|-1.1806600|-0.2900536	chr9	 23819670	 23821096	+	NA	NA	NA	NA	ELAVL2	NA	chr9:23809670-23826063	inner
CUST_44044_PI429285431	1.4502885	A	0.90970016	A	1.4545655772638	0	lncRNA	48722-2_{3001..3738}	"gi|294345402|ref|NR_001557.4| Homo sapiens aldehyde oxidase 2 pseudogene (AOX2P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|294345402|ref|NR_001557.4| Homo sapiens aldehyde oxidase 2 pseudogene (AOX2P), non-coding RNA"	Chr2	201563446	201564183	+	344454	NR_001557.4	NA	NA	NA	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
LNCA_21_P0010949	3.1983144	P	0.95700085	A	4.72827370157982	0	lncRNA	ENST00000420424	NA	BC036645	NA	Hs.440648	XLOC_l2_002033	NA	ENST00000420424	THC2531853	NA	"BROAD Institute lincRNA (XLOC_l2_002033), lincRNA [TCONS_l2_00004215]"	chr10:89046737-89046678	hs|10q23.2	Agilent_HUMAN_G3V2	ENST00000420424	ENST00000420424	chr10	 89046678	 89046737	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23648_PI429285431	8.70052	P	8.124275	P	1.49096356231248	0	lncRNA	25213-1_{1..318}	lnc-ZFAT-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZFAT-3:1	chr8	136469108	136469425	-	lnc-ZFAT-3	lnc-ZFAT-3:1	ENSG00000254372.1	RP11-343P9.1	KHDRBS3	NA	chr8:136469716-136479195	inter
CUST_1831_PI429285431	4.4576426	P	4.4591775	P	0.998936654145858	0	lncRNA	1820-1_{1..516}	"transcript_id ""ENST00000505680.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505680.1"" | genecode_v17"	chr4	105154934	105155449	+	ENSG00000251170.1	ENST00000505680.1	RP11-729M20.1	RP11-729M20.1-002	NA	NA	NA	inter
CUST_15338_PI429285431	5.8927956	P	6.018006	P	0.916870318767372	0	lncRNA	17017-1_{1..3000}	lnc-SULF2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SULF2-2:2	chr20	 46528127	 46531126	-	lnc-SULF2-2	lnc-SULF2-2:2	XLOC_013771	linc-SULF2-3	NA	NA	NA	inter
CUST_16027_PI429285431	1.0033833	A	0.9914173	A	1.00832869132814	0	lncRNA	17724-1_{1..408}	lnc-LINC00273-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LINC00273-4:1	chr16	 34263773	 34264180	-	lnc-LINC00273-4	lnc-LINC00273-4:1	XLOC_011926	linc-TP53TG3B-3	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
CUST_151_PI429285431	0.91070825	A	0.9080806	A	1.00182300785107	0	lncRNA	141-1_{1..363}	"transcript_id ""ENST00000413887.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413887.1"" | genecode_v17"	chr1	  5647428	  5647790	-	ENSG00000236948.1	ENST00000413887.1	RP11-154H17.1	RP11-154H17.1-001	NA	NA	NA	inter
CUST_12628_PI429285431	2.7638254	A	2.1616163	A	1.51803925720065	0	lncRNA	14244-1_{1..2075}	lnc-MPPED2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MPPED2-3:2	chr11	 30716819	 30718893	-	lnc-MPPED2-3	lnc-MPPED2-3:2	XLOC_009404	linc-MPPED2-2	NA	NA	NA	inter
CUST_49932_PI429285431	5.1151743	P	5.504262	P	0.763612328333698	0	lncRNA	53682-1_{1..705}	hg19_lincRNAsTranscripts_TCONS_l2_00026128 range=chr7:99197798-99208324 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026128 range=chr7:99197798-99208324 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 99197798	 99198502	+	NA	NA	NA	NA	ZNF498	NA	chr7:99214571-99218324	inner
LNCA_21_P0005401	4.018116	P	4.696393	P	0.624911155725916	0	lncRNA	TCONS_00013537	NA	NA	NA	NA	XLOC_006176	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006176), lincRNA [TCONS_00013537]"	chr7:95071616-95071675	hs|7q21.3	Agilent_HUMAN_G3V2	TCONS_00013537	TCONS_00013537	chr7	 95071616	 95071675	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008272	1.0244665	A	0.99018705	A	1.02404523876062	0	lncRNA	ENST00000553785	XR_110241	XR_110241	NA	Hs.112858	XLOC_010917	NA	ENST00000553785	THC2604764	NA	"PREDICTED: Homo sapiens hypothetical LOC100506999 (LOC100506999), miscRNA [XR_110241]"	chr14:96044688-96044747	hs|14q32.13	Agilent_HUMAN_G3V2	ENST00000553785	ENST00000553785	chr14	 96044688	 96044747	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33840_PI429285431	2.7918713	A	3.696813	P	0.534054284978211	0	lncRNA	35387-1_{1..1420}	n340627|BC034282|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3089|NULL|2.5862100|-0.2332967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n340627|BC034282|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3089|NULL|2.5862100|-0.2332967	chr5	133562100	133563519	+	NA	NA	NA	NA	PPP2CA	NA	chr5:133552100-133561950	inter
CUST_2823_PI429285431	4.6852474	P	4.8857317	P	0.870258376195737	0	lncRNA	2806-1_{1..239}	"transcript_id ""ENST00000436266.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436266.1"" | genecode_v17"	chr7	 46341718	 46341956	+	ENSG00000237760.1	ENST00000436266.1	AC092657.2	AC092657.2-001	NA	NA	NA	inter
CUST_18358_PI429285431	1.1006706	A	2.5910292	A	0.355924068498889	0	lncRNA	20086-1_{1..471}	lnc-C8A-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C8A-4:4	chr1	 58328128	 58328598	+	lnc-C8A-4	lnc-C8A-4:4	ENSG00000226759	RP4-737A23.2	DAB1	NA	chr1:58318128-58338308	inner
CUST_10065_PI429285431	1.7526547	A	2.390579	A	0.642636887805419	0	lncRNA	11589-1_{1..1982}	lnc-PPP3CC-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP3CC-1:3	chr8	 22408060	 22410041	+	lnc-PPP3CC-1	lnc-PPP3CC-1:3	XLOC_006738	linc-SORBS3	SORBS3	NA	chr8:22409251-22418678	inter
CUST_10672_PI429285431	1.3527864	A	1.3262874	A	1.01853743102411	0	lncRNA	12205-1_{1..1268}	lnc-COIL-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COIL-2:4	chr17	 55162201	 55163468	-	lnc-COIL-2	lnc-COIL-2:4	XLOC_012530	linc-COIL-2	AKAP1	NA	chr17:55162553-55172368	inter
CUST_27850_PI429285431	1.941809	A	2.5276637	A	0.66625451051397	0	lncRNA	29443-1_{1..536}	n325086|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077578|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077578|-1.0301200|-0.3620930	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325086|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077578|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077578|-1.0301200|-0.3620930	chr20	  2135872	  2136407	+	NA	NA	NA	NA	STK35	NA	chr20:2125872-2129201	inter
CUST_43269_PI429285431	0.9822581	A	0.95181525	A	1.02132558393016	0	lncRNA	48087-1_{1..714}	ENST00000586389 havana:sense_intronic chromosome:GRCh37:18:76877207:76877920:1 gene:ENSG00000267655 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000586389 havana:sense_intronic chromosome:GRCh37:18:76877207:76877920:1 gene:ENSG00000267655 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr18	 76877207	 76877920	+	ENSG00000267655	ENST00000586389	NA	NA	ATP9B	NA	chr18:76867207-76887920	inner
CUST_19903_PI429285431	1.0262928	A	1.0249251	A	1.00094846690938	0	lncRNA	21558-1_{1..808}	lnc-HORMAD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HORMAD2-1:1	chr22	 30635936	 30636743	+	lnc-HORMAD2-1	lnc-HORMAD2-1:1	ENSG00000232530.1	RP1-102K2.6	LIF	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50chr22:30636442-30642796"	NA	inner
CUST_35351_PI429285431	0.92722946	A	0.91703737	A	1.00708963173283	0	lncRNA	36762-1_{1..331}	n342395|AY166785|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4887|NULL|0.2340270|-0.4517618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342395|AY166785|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4887|NULL|0.2340270|-0.4517618	chr19	 44377978	 44378308	-	NA	NA	NA	NA	ZNF404	NA	chr19:44376515-44388116	inner
CUST_16700_PI429285431	1.0003344	A	0.9293833	A	1.0504089399044	0	lncRNA	18405-1_{1..307}	lnc-FRG1-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRG1-5:5	chr4	190198625	190198931	+	lnc-FRG1-5	lnc-FRG1-5:5	XLOC_003839	linc-FRG1-5	NA	NA	NA	inter
LNCA_21_P0003592	1.0444896	A	2.3849373	A	0.394898091352794	0	lncRNA	ENST00000512268	NA	NA	NA	NA	XLOC_003492	NA	ENST00000512268	THC2737086	NA	"BROAD Institute lincRNA (XLOC_003492), lincRNA [TCONS_00008030]"	chr4:29222571-29222629	hs|4p15.1	Agilent_HUMAN_G3V2	ENST00000512268	ENST00000512268	chr4	 29222571	 29222629	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41782_PI429285431	1.6807549	A	0.96391445	A	1.64357859849782	0	lncRNA	43356-1_{1..94}	ENST00000385265 ncrna:miRNA chromosome:GRCh37:X:146342050:146342143:-1 gene:ENSG00000208000 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385265 ncrna:miRNA chromosome:GRCh37:X:146342050:146342143:-1 gene:ENSG00000208000 gene_biotype:miRNA transcript_biotype:miRNA	chrX	146342050	146342143	-	ENSG00000208000	ENST00000385265	NA	NA	NA	NA	NA	inter
LNCA_21_P0012110	0.9213661	A	2.5098255	A	0.332526356438359	0	lncRNA	THC2684837	NA	NA	NA	NA	XLOC_l2_008546	NA	NA	THC2684837	NA	"BROAD Institute lincRNA (XLOC_l2_008546), lincRNA [TCONS_l2_00016153]"	chr20:010734583-010734642	hs|20p12.2	Agilent_HUMAN_G3V2	THC2684837	THC2684837	chr20	 10734583	 10734642	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23918_PI429285431	0.91130555	A	1.1020738	A	0.876139043987854	0	lncRNA	25475-1_{1..567}	lnc-ANKAR-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKAR-1:3	chr2	190629581	190630147	+	lnc-ANKAR-1	lnc-ANKAR-1:3	ENSG00000253559.1	OSGEPL1-AS1	OSGEPL1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30chr2:190619581-190627924"	NA	inter
CUST_1155_PI429285431	0.91670376	A	0.92249864	A	0.995991351434749	0	lncRNA	1144-1_{1..2026}	"transcript_id ""ENST00000442456.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442456.1"" | genecode_v17"	chr2	171579719	171581744	-	ENSG00000234350.1	ENST00000442456.1	AC007405.4	AC007405.4-001	SP5	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30chr2:171571857-171574498"	NA	inter
CUST_9919_PI429285431	0.9045774	A	1.9634099	A	0.480020358681315	0	lncRNA	11443-1_{1..1334}	lnc-AKT3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AKT3-2:1	chr1	244210736	244212069	-	lnc-AKT3-2	lnc-AKT3-2:1	XLOC_001286	linc-AKT3-2	ZNF238	NA	chr1:244214561-244220778	inter
CUST_13481_PI429285431	4.7197576	P	5.001596	P	0.822542198629942	0	lncRNA	15119-1_{1..813}	lnc-GNB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNB2-1:1	chr7	100263725	100264537	+	lnc-GNB2-1	lnc-GNB2-1:1	XLOC_006193	linc-GNB2	ACTL6B	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50chr7:100253725-100254084"	NA	inter
CUST_803_PI429285431	0.90493006	A	0.90310127	A	1.00126842440296	0	lncRNA	796-1_{1..539}	"transcript_id ""ENST00000458359.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458359.1"" | genecode_v17"	chr2	 21853420	 21853958	-	ENSG00000235537.1	ENST00000458359.1	AC009411.2	AC009411.2-001	NA	NA	NA	inter
CUST_45255_PI429285431	4.2600317	P	1.728347	A	5.78246528630121	0	lncRNA	49708-1_{1..2946}	"gi|302148486|ref|NR_036471.1| Homo sapiens enhancer of yellow 2 homolog (Drosophila) (ENY2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302148486|ref|NR_036471.1| Homo sapiens enhancer of yellow 2 homolog (Drosophila) (ENY2), transcript variant 3, non-coding RNA"	Chr8	110346552	110349497	+	56943	NR_036471.1	NA	NA	NA	NA	NA	inter
CUST_9606_PI429285431	0.9211262	A	0.9148188	A	1.00438152747143	0	lncRNA	11122-1_{1..872}	lnc-EBPL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EBPL-1:1	chr13	 50214004	 50214875	-	lnc-EBPL-1	lnc-EBPL-1:1	XLOC_010610	linc-RCBTB1	ARL11	NA	chr13:50204004-50208008	inter
CUST_48161_PI429285431	1.454825	A	0.9309818	A	1.43778025852021	0	lncRNA	52026-1_{1..2765}	"gi|310112935|ref|XR_111617.1| PREDICTED: Homo sapiens uncharacterized LOC100507918 (LOC100507918), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310112935|ref|XR_111617.1| PREDICTED: Homo sapiens uncharacterized LOC100507918 (LOC100507918), misc_RNA"	NA	NA	NA	NA	NA	XR_111617.1	NA	NA	NA	NA	NA	Unknown
CUST_24368_PI429285431	2.9524941	A	2.6833155	A	1.20512149508543	0	lncRNA	25921-1_{1..562}	lnc-ZCWPW2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ZCWPW2-2:2	chr3	 28798841	 28799402	+	lnc-ZCWPW2-2	lnc-ZCWPW2-2:2	ENSG00000228214.1	AC109586.1	NA	NA	NA	inter
LNCA_21_P0001662	0.9770225	A	0.927414	A	1.03498402509439	0	lncRNA	TCONS_00001931	NA	NA	NA	NA	XLOC_000036	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000036), lincRNA [TCONS_00001931]"	chr1:5058736-5075842	hs|1p36.32	Agilent_HUMAN_G3V2	TCONS_00001931	TCONS_00001931	chr1	  5058736	  5075842	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19973_PI429285431	8.69759	P	8.392762	P	1.23527135767197	0	lncRNA	21626-1_{1..394}	lnc-ZNF862-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:10	chr7	149509649	149510042	+	lnc-ZNF862-1	lnc-ZNF862-1:10	ENSG00000197558.7	SSPO	SSPO	NA	chr7:149499649-149519723	inner
CUST_16954_PI429285431	1.2808812	A	1.7410858	A	0.726883166296413	0	lncRNA	18666-1_{1..361}	lnc-HNF1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HNF1A-1:1	chr12	121345458	121345818	+	lnc-HNF1A-1	lnc-HNF1A-1:1	XLOC_009911	linc-HNF1A	SPPL3	NA	chr12:121335458-121342155	inter
CUST_814_PI429285431	1.68842	A	2.1198359	A	0.741533666844392	0	lncRNA	807-1_{1..892}	"transcript_id ""ENST00000415245.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415245.1"" | genecode_v17"	chr2	 23570525	 23571416	+	ENSG00000233714.1	ENST00000415245.1	AC012506.2	AC012506.2-001	NA	NA	NA	inter
CUST_36393_PI429285431	0.917617	A	0.9051977	A	1.00864556162831	0	lncRNA	37611-1_{1..561}	n344910|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_459|NULL|-1.3343200|-0.4554885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344910|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_459|NULL|-1.3343200|-0.4554885	chr6	 78199706	 78200266	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43674_PI429285431	4.632725	P	4.636209	P	0.997587988807934	0	lncRNA	48428-2_{3001..6000}	"gi|357430785|ref|NR_045530.1| Homo sapiens sterol O-acyltransferase 1 (SOAT1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|357430785|ref|NR_045530.1| Homo sapiens sterol O-acyltransferase 1 (SOAT1), transcript variant 4, non-coding RNA"	Chr1	179265849	179268848	+	6646	NR_045530.1	NA	NA	NA	"hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60"	NA	inter
CUST_37640_PI429285431	8.4942	P	8.478218	P	1.01113946514015	0	lncRNA	38734-1_{1..448}	n346118|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1668|NULL|-1.2685800|-0.2113108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346118|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1668|NULL|-1.2685800|-0.2113108	chr9	 34665066	 34665513	-	NA	NA	NA	NA	IL11RA	NA	chr9:34655066-34661884	inter
CUST_24895_PI429285431	1.1895111	A	1.9957571	A	0.57186796667536	0	lncRNA	26436-1_{1..2013}	lnc-PDRG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDRG1-1:1	chr20	 30618785	 30620797	-	lnc-PDRG1-1	lnc-PDRG1-1:1	ENSG00000226239.1	RP1-310O13.7	C20orf160	"hg19_refFlat_CCM2L:range=chr20:30598258-306176055'pad=0,hg19_refFlat_CCM2L:range=chr20:30598258-306176055'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr20:30608785-30619984"	NA	inner
CUST_12741_PI429285431	0.92954576	A	1.2180471	A	0.818752130082347	0	lncRNA	14366-1_{1..499}	lnc-RP11-181C3.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-181C3.1.1-1:2	chr12	 98897538	 98898036	-	lnc-RP11-181C3.1.1-1	lnc-RP11-181C3.1.1-1:2	XLOC_010167	linc-CDK17-4	NA	NA	NA	inter
CUST_46604_PI429285431	2.0366266	A	1.6088209	A	1.34518602868881	0	lncRNA	50784-1_{1..3000}	"gi|318055756|ref|NR_027155.2| Homo sapiens smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene (LOC100271836), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|318055756|ref|NR_027155.2| Homo sapiens smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene (LOC100271836), non-coding RNA"	Chr16	 21458004	 21461003	-	100271836	NR_027155.2	NA	NA	NA	NA	NA	inter
CUST_16757_PI429285431	1.0027864	A	1.8269988	A	0.56479045019414	0	lncRNA	18465-1_{1..557}	lnc-VCP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VCP-1:1	chr9	 34989156	 34989712	-	lnc-VCP-1	lnc-VCP-1:1	XLOC_007676	linc-C9orf144B	DNAJB5	NA	chr9:34989638-34998430	inter
LNCA_21_P0008928	1.2963538	A	1.6523099	A	0.781351655686086	0	lncRNA	TCONS_00024381	NA	NA	NA	NA	XLOC_011708	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011708), lincRNA [TCONS_00024381]"	chr16:48536429-48538292	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00024381	TCONS_00024381	chr16	 48536429	 48538292	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10522_PI429285431	0.924746	A	1.170831	A	0.843181430635963	0	lncRNA	12050-1_{1..658}	lnc-GADD45A-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GADD45A-1:5	chr1	 68441064	 68441721	+	lnc-GADD45A-1	lnc-GADD45A-1:5	XLOC_000238	linc-LRRC7-5	NA	NA	NA	inter
CUST_42132_PI429285431	3.9154544	P	4.3585267	P	0.735566509426069	0	lncRNA	44144-1_{1..80}	ENST00000580187 ncrna:miRNA chromosome:GRCh37:9:137742123:137742202:-1 gene:ENSG00000264136 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580187 ncrna:miRNA chromosome:GRCh37:9:137742123:137742202:-1 gene:ENSG00000264136 gene_biotype:miRNA transcript_biotype:miRNA	chr9	137742123	137742202	-	ENSG00000264136	ENST00000580187	NA	NA	COL5A1	NA	chr9:137732123-137736689	inter
CUST_14392_PI429285431	1.2658772	A	1.6093563	A	0.788138400222381	0	lncRNA	16054-1_{1..346}	lnc-ICOSLG-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ICOSLG-4:1	chr21	 45608341	 45608686	-	lnc-ICOSLG-4	lnc-ICOSLG-4:1	XLOC_014112	linc-CSTB-2	NA	NA	NA	inter
CUST_3217_PI429285431	0.9144133	A	1.0808944	A	0.891013317368483	0	lncRNA	3196-1_{1..371}	"transcript_id ""ENST00000518266.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518266.1"" | genecode_v17"	chr8	 86901752	 86902122	+	ENSG00000253154.1	ENST00000518266.1	CTA-392E5.1	CTA-392E5.1-002	NA	NA	NA	inter
CUST_1078_PI429285431	1.3211646	A	1.1812226	A	1.10186081738646	0	lncRNA	1067-1_{1..469}	"transcript_id ""ENST00000448672.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448672.1"" | genecode_v17"	chr2	136835462	136835930	+	ENSG00000237262.1	ENST00000448672.1	AC068492.1	AC068492.1-001	NA	NA	NA	inter
CUST_13159_PI429285431	6.4181595	P	6.295139	P	1.08901248956787	0	lncRNA	14786-1_{1..617}	lnc-PRSS22-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRSS22-1:1	chr16	  2918093	  2918709	-	lnc-PRSS22-1	lnc-PRSS22-1:1	XLOC_011856	linc-PRSS22	PRSS22	NA	chr16:2908093-2908171	inter
CUST_22570_PI429285431	4.106706	P	4.295983	P	0.877045138347725	0	lncRNA	24157-1_{1..585}	lnc-ACOT12-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACOT12-1:6	chr5	 80597106	 80597690	-	lnc-ACOT12-1	lnc-ACOT12-1:6	ENSG00000247572.2	CTC-281B15.1	ZCCHC9	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RASGRF2:range=chr5:80256558-805215895'pad=0,hg19_refFlat_RASGRF2:range=chr5:80256558-805215895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr5:80597402-80607316"	NA	inter
CUST_47721_PI429285431	1.6982021	A	0.9158429	A	1.7199411474913	0	lncRNA	51680-3_{6001..6664}	"gi|385137061|ref|NR_047599.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 29, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137061|ref|NR_047599.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 29, non-coding RNA"	ChrY	 15366259	 15366922	-	7404	NR_047599.1	NA	NA	NA	NA	NA	inter
CUST_3221_PI429285431	0.92274654	A	0.90968394	A	1.00909541856768	0	lncRNA	3200-1_{1..793}	"transcript_id ""ENST00000517400.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517400.1"" | genecode_v17"	chr8	 91233716	 91234508	+	ENSG00000253394.1	ENST00000517400.1	LINC00534	LINC00534-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80"	NA	inter
CUST_39301_PI429285431	5.399812	P	5.598158	P	0.871549191764926	0	lncRNA	40270-1_{1..3000}	n386310|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gsj.1||7.0347700|-0.1504524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386310|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gsj.1||7.0347700|-0.1504524	chr22	 20387889	 20390888	-	NA	NA	NA	NA	TMEM191B	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20chr22:20377889-20380440"	NA	inter
CUST_6487_PI429285431	5.3019934	P	5.961807	P	0.632960071811048	0	lncRNA	6429-1_{1..2305}	"transcript_id ""ENST00000586340.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586340.1"" | genecode_v17"	chr19	 36801260	 36803564	+	ENSG00000267053.2	ENST00000586340.1	CTD-3162L10.1	CTD-3162L10.1-005	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
CUST_30118_PI429285431	2.1204364	A	2.76356	A	0.6403250697506	0	lncRNA	31891-1_{1..407}	n334690|AJ002775|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243977|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243977|2.7373700|-0.0481993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334690|AJ002775|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243977|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243977|2.7373700|-0.0481993	chr14	107034728	107035134	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47969_PI429285431	7.712605	P	7.7807245	P	0.953880536312468	0	lncRNA	51860-1_{1..2333}	"gi|410172710|ref|XR_171935.1| PREDICTED: Homo sapiens uncharacterized LOC100130219 (LOC100130219), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410172710|ref|XR_171935.1| PREDICTED: Homo sapiens uncharacterized LOC100130219 (LOC100130219), misc_RNA"	NA	NA	NA	NA	NA	XR_171935.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80"	NA	Unknown
CUST_32277_PI429285431	1.9816445	A	2.0314975	A	0.966034755737564	0	lncRNA	33963-1_{1..1797}	n338853|AK022362|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1276|NULL|-0.2507780|-0.3031589	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338853|AK022362|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1276|NULL|-0.2507780|-0.3031589	chr2	 58728943	 58730739	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_5040_PI429285431	1.1214004	A	2.500241	A	0.3845276910356	0	lncRNA	4981-1_{1..686}	"transcript_id ""ENST00000557109.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557109.1"" | genecode_v17"	chr14	102018558	102019243	-	ENSG00000258498.1	ENST00000557109.1	DIO3OS	DIO3OS-001	DIO3	NA	chr14:102027688-102029789	inter
CUST_21074_PI429285431	0.9238272	A	0.92424333	A	0.99971160225838	0	lncRNA	22700-1_{1..549}	lnc-SCPEP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SCPEP1-2:1	chr17	 55018396	 55018944	+	lnc-SCPEP1-2	lnc-SCPEP1-2:1	ENSG00000262298.1	RP5-1107A17.3	COIL	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90chr17:55015560-55028636"	NA	inner
CUST_51340_PI429285431	3.3719478	P	3.7554631	P	0.766567479324634	0	lncRNA	54940-1_{1..828}	hg19_lincRNAsTranscripts_TCONS_l2_00009515 range=chr15:71088996-71095027 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009515 range=chr15:71088996-71095027 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 71088996	 71089823	-	NA	NA	NA	NA	LARP6	NA	chr15:71088859-71105027	inter
CUST_9902_PI429285431	0.9257393	A	0.9153745	A	1.0072102011234	0	lncRNA	11426-1_{1..418}	lnc-LRRTM3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRTM3-1:1	chr10	 67375394	 67375811	+	lnc-LRRTM3-1	lnc-LRRTM3-1:1	XLOC_008501	linc-LRRTM3-2	NA	NA	NA	inter
CUST_16706_PI429285431	2.5034485	A	1.6113303	A	1.85589900051292	0	lncRNA	18412-1_{1..313}	lnc-GPAT2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPAT2-1:2	chr2	 96622534	 96622846	-	lnc-GPAT2-1	lnc-GPAT2-1:2	XLOC_002209	linc-TRIM43B-2	LOC400986	NA	chr2:96612534-96632618	inter
CUST_18522_PI429285431	8.87292	P	9.005693	P	0.912076664394722	0	lncRNA	20236-1_{1..282}	lnc-VWA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VWA1-1:1	chr1	  1362934	  1363215	+	lnc-VWA1-1	lnc-VWA1-1:1	ENSG00000205116	TMEM88B	VWA1	NA	chr1:1370903-1373005	inner
CUST_36328_PI429285431	1.9450673	A	2.59182	A	0.638716355968802	0	lncRNA	37559-1_{1..1025}	n344854|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_403|NULL|-1.3050000|-0.2245766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344854|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_403|NULL|-1.3050000|-0.2245766	chr5	141666533	141667557	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
CUST_49313_PI429285431	5.4972734	P	5.6511974	P	0.898802473546352	0	lncRNA	53129-1_{1..327}	hg19_lincRNAsTranscripts_TCONS_l2_00023710 range=chr5:34179062-34182970 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023710 range=chr5:34179062-34182970 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 34179062	 34179388	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34615_PI429285431	0.90216637	A	1.9775568	A	0.474542619784601	0	lncRNA	36070-1_{1..2185}	n341500|AF131788|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3970|NULL|-1.2122500|-0.2832451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341500|AF131788|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3970|NULL|-1.2122500|-0.2832451	chr8	 54301260	 54303444	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_401_PI429201921	0.9024345	A	0.8988798	A	1.00246696825356	0	lncRNA	249-3_{6001..9000}	TC13001330.hg.1	TCONS_l2_00007047-XLOC_l2_003883 // Broad TUCP // linc-RASA3-5 chr13:-:19400928-19410602 // chr13 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr13:-:19400928-19410602	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00007047-XLOC_l2_003883	linc-RASA3-5	chr13	 19400928	 19410602	-	NA	NA	NA	NA	INADL	NA	chr1:62208149-62218096	Unknown
CUST_19173_PI429285431	6.4517713	P	6.938981	P	0.713403550002011	0	lncRNA	20842-1_{1..622}	lnc-METAP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-METAP1-2:1	chr4	 99915951	 99916572	+	lnc-METAP1-2	lnc-METAP1-2:1	ENSG00000263923.1	RP11-571L19.7	METAP1	"hg19_refFlat_EIF4E:range=chr4:99802179-998501235'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998501235'pad=0 3'pad=0 strand=- repeatMasking=none,-99.20chr4:99905951-99926145"	NA	inter
CUST_28051_PI429285431	0.9058018	A	0.9078119	A	0.998607675037404	0	lncRNA	29669-1_{1..367}	n325317|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326243|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326243|-0.7245060|-0.3431079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325317|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326243|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326243|-0.7245060|-0.3431079	chr2	 45093856	 45094222	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51395_PI429285431	3.5273645	P	3.0273595	A	1.41421846367231	0	lncRNA	54979-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00009673 range=chr16:31711933-31724238 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009673 range=chr16:31711933-31724238 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 31714933	 31717932	+	NA	NA	NA	NA	ZNF720	"hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20chr16:31724550-31734238"	NA	inter
CUST_47503_PI429285431	9.900697	P	9.388403	P	1.42631635001385	0	lncRNA	51516-2_{3001..3203}	"gi|209529684|ref|NR_024209.1| Homo sapiens ring finger protein 185 (RNF185), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209529684|ref|NR_024209.1| Homo sapiens ring finger protein 185 (RNF185), transcript variant 4, non-coding RNA"	Chr22	 31559138	 31559340	+	91445	NR_024209.1	NA	NA	NA	NA	NA	inter
CUST_21987_PI429285431	1.5510343	A	1.3729513	A	1.13137955061488	0	lncRNA	23595-1_{1..432}	lnc-TDRD10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TDRD10-1:1	chr1	154527126	154527557	+	lnc-TDRD10-1	lnc-TDRD10-1:1	ENSG00000229780.1	UBE2Q1-AS1	TDRD10	"hg19_refFlat_UBE2Q1:range=chr1:154522914-1545310295'pad=0,hg19_refFlat_UBE2Q1:range=chr1:154522914-1545310295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr1:154517126-154520623"	NA	inner
CUST_33521_PI429285431	3.9573796	P	4.264264	P	0.808385640384822	0	lncRNA	35089-1_{1..1640}	n340257|BC040914|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2718|NULL|-0.9404360|-0.1850454	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340257|BC040914|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2718|NULL|-0.9404360|-0.1850454	chr4	153021969	153023608	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35001_PI429285431	1.0754641	A	0.9213413	A	1.11274483169572	0	lncRNA	36415-1_{1..677}	n341931|AF086303|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4412|NULL|-1.2065000|-0.3136508	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341931|AF086303|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4412|NULL|-1.2065000|-0.3136508	chr6	 74779166	 74779842	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14032_PI429285431	1.1603347	A	0.9036345	A	1.19474290488235	0	lncRNA	15678-1_{1..337}	lnc-MSI2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MSI2-1:1	chr17	 55778590	 55778926	+	lnc-MSI2-1	lnc-MSI2-1:1	XLOC_012259	linc-DYNLL2-2	NA	NA	NA	inter
CUST_9371_PI429285431	3.6727626	P	3.427638	P	1.1851951272482	0	lncRNA	10872-1_{1..409}	lnc-WRNIP1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRNIP1-2:2	chr6	  2283751	  2284159	+	lnc-WRNIP1-2	lnc-WRNIP1-2:2	XLOC_005126	linc-WRNIP1-3	NA	NA	NA	inter
CUST_50895_PI429285431	4.3561563	P	4.134459	P	1.16610467710658	0	lncRNA	54537-1_{1..363}	hg19_lincRNAsTranscripts_TCONS_l2_00006048 range=chr12:2815382-2835915 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006048 range=chr12:2815382-2835915 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  2815382	  2815744	-	NA	NA	NA	NA	CACNA1C	NA	chr12:2805382-2807115	inter
CUST_17599_PI429285431	0.91573334	A	0.9195357	A	0.997367875018037	0	lncRNA	19325-1_{1..336}	lnc-CDCA4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDCA4-1:1	chr14	105493560	105493895	-	lnc-CDCA4-1	lnc-CDCA4-1:1	XLOC_011150	linc-CDCA4-1	CDCA4	NA	chr14:105483560-105487425	inter
CUST_23330_PI429285431	4.057625	P	4.561549	P	0.705186127894732	0	lncRNA	24901-1_{1..792}	lnc-KLHDC5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHDC5-1:1	chr12	 28122045	 28122836	+	lnc-KLHDC5-1	lnc-KLHDC5-1:1	ENSG00000257042.1	RP11-993B23.3	PTHLH	"hg19_refFlat_PTHLH:range=chr12:28111492-281224275'pad=0,hg19_refFlat_PTHLH:range=chr12:28111492-281224275'pad=0 3'pad=0 strand=- repeatMasking=none,-103.40;hg19_refFlat_PTHLH:range=chr12:28116277-281224275'pad=0,hg19_refFlat_PTHLH:range=chr12:28116277-281224275'pad=0 3'pad=0 strand=- repeatMasking=none,-103.40chr12:28112045-28124916"	NA	inner
CUST_24071_PI429285431	0.9110339	A	1.1109781	A	0.870584234764787	0	lncRNA	25621-1_{1..709}	lnc-RAC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAC3-1:1	chr17	 79997057	 79997765	+	lnc-RAC3-1	lnc-RAC3-1:1	ENSG00000264569.1	RP13-650J16.1	LRRC45	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50chr17:79987057-79989027"	NA	inter
CUST_5073_PI429285431	3.7205515	P	3.4429975	P	1.21213803636607	0	lncRNA	5013-1_{1..230}	"transcript_id ""ENST00000427543.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427543.1"" | genecode_v17"	chr14	106064224	106064453	-	ENSG00000227468.4	ENST00000427543.1	AL928742.12	AL928742.12-004	NA	NA	NA	inter
CUST_24617_PI429285431	0.91942453	A	0.9073202	A	1.00842537759316	0	lncRNA	26166-1_{1..2975}	lnc-BRD1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BRD1-3:1	chr22	 50009224	 50012198	-	lnc-BRD1-3	lnc-BRD1-3:1	ENSG00000235111.1	RP1-29C18.8	NA	NA	NA	inter
CUST_46234_PI429285431	0.8996738	A	0.9003867	A	0.999505977444327	0	lncRNA	50473-1_{1..538}	"gi|388490279|ref|NR_046527.1| Homo sapiens PCDH9 antisense RNA 2 (PCDH9-AS2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|388490279|ref|NR_046527.1| Homo sapiens PCDH9 antisense RNA 2 (PCDH9-AS2), non-coding RNA"	Chr13	 67399301	 67399838	+	100874064	NR_046527.1	NA	NA	NA	NA	NA	inter
CUST_24070_PI429285431	1.623085	A	1.7634262	A	0.907304550765236	0	lncRNA	25620-1_{1..498}	lnc-RP11-44L9.1.1-11:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-44L9.1.1-11:1	chr16	 72843246	 72843743	+	lnc-RP11-44L9.1.1-11	lnc-RP11-44L9.1.1-11:1	ENSG00000259209.1	RP5-991G20.2	ZFHX3	NA	chr16:72833246-72853538	inner
CUST_4431_PI429285431	3.4970536	P	3.3672278	P	1.094161577389	0	lncRNA	4381-1_{1..680}	"transcript_id ""ENST00000545276.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000545276.1"" | genecode_v17"	chr12	119210837	119211516	-	ENSG00000255618.1	ENST00000545276.1	RP11-357K6.1	RP11-357K6.1-001	NA	NA	NA	inter
CUST_4647_PI429285431	1.617527	A	1.32005	A	1.22899325679972	0	lncRNA	4593-1_{1..802}	"transcript_id ""ENST00000596240.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596240.1"" | genecode_v17"	chr13	 75126980	 75127781	+	ENSG00000236678.2	ENST00000596240.1	LINC00347	LINC00347-006	NA	NA	NA	inter
LNCA_32_P3572	3.244746	P	2.787437	A	1.3729784676966	0	lncRNA	ENST00000449075	XR_109883	XR_109883	NA	NA	NA	NA	ENST00000449075	THC2665394	NA	"PREDICTED: Homo sapiens hypothetical LOC100506797, transcript variant 3 (LOC100506797), miscRNA [XR_109883]"	chr2:118940578-118940519	hs|2q14.2	Agilent_HUMAN_G3V2	ENST00000449075	ENST00000449075	chr2	118940519	118940578	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46689_PI429285431	9.133587	P	8.997193	P	1.09915435563375	0	lncRNA	50851-2_{3001..3404}	"gi|217272878|ref|NR_024568.1| Homo sapiens F-box protein 31 (FBXO31), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|217272878|ref|NR_024568.1| Homo sapiens F-box protein 31 (FBXO31), transcript variant 2, non-coding RNA"	Chr16	 87365942	 87366345	-	79791	NR_024568.1	NA	NA	NA	NA	NA	inter
CUST_38784_PI429285431	9.214438	P	8.68265	P	1.44571983445097	0	lncRNA	39778-1_{1..2286}	n384440|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003gun.1||-0.0083373|-0.3063932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384440|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003gun.1||-0.0083373|-0.3063932	chr4	 39548920	 39551205	-	NA	NA	NA	NA	C4orf34	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-21.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20chr4:39552550-39561206"	NA	inter
CUST_2911_PI429285431	6.132135	P	5.983962	P	1.10816522493484	0	lncRNA	2892-1_{1..763}	"transcript_id ""ENST00000489626.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000489626.1"" | genecode_v17"	chr7	115429783	115430545	+	ENSG00000243345.1	ENST00000489626.1	RP11-458K10.3	RP11-458K10.3-001	NA	NA	NA	inter
CUST_34690_PI429285431	0.9027706	A	0.9027593	A	1.00000783259381	0	lncRNA	36142-1_{1..1214}	n341596|BC023993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4067|NULL|-0.4538080|-0.3664572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341596|BC023993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4067|NULL|-0.4538080|-0.3664572	chr8	123917555	123918768	+	NA	NA	NA	NA	ZHX2	NA	chr8:123907555-123928736	inner
CUST_14510_PI429285431	0.9071561	A	0.91507274	A	0.994527631564499	0	lncRNA	16176-1_{1..305}	lnc-TSHZ3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSHZ3-3:1	chr19	 32436223	 32436527	-	lnc-TSHZ3-3	lnc-TSHZ3-3:1	XLOC_013296	linc-TSHZ3-4	NA	NA	NA	inter
CUST_39118_PI429285431	2.0396485	A	2.2747984	A	0.849596719106448	0	lncRNA	40094-1_{1..2140}	n385691|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bpf.1||0.3483570|-0.1899934	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385691|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bpf.1||0.3483570|-0.1899934	chr9	127805167	127807306	-	NA	NA	NA	NA	SCAI	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.30;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70chr9:127795167-127817307"	NA	inner
CUST_7637_PI429285431	4.550684	P	4.9041476	P	0.782702739768483	0	lncRNA	9269-1_{1..3000}	lnc-NFYB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NFYB-2:1	chr12	104859855	104862854	-	lnc-NFYB-2	lnc-NFYB-2:1	ENSG00000245335	AC079316.1	CHST11	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10chr12:104850692-104872733"	NA	inner
CUST_31770_PI429285431	0.9173577	A	2.0215049	A	0.465177363795222	0	lncRNA	33511-1_{1..603}	n338312|AF086279|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|706|NULL|-0.8786310|-0.2247800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338312|AF086279|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|706|NULL|-0.8786310|-0.2247800	chr14	 56382444	 56383046	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23030_PI429285431	3.3394654	P	3.5619986	P	0.857059220937499	0	lncRNA	24601-1_{1..426}	lnc-ZC3H12B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZC3H12B-4:1	chrX	 62571721	 62572146	+	lnc-ZC3H12B-4	lnc-ZC3H12B-4:1	ENSG00000233661.1	SPIN4-AS1	SPIN4	NA	chrX:62567107-62571218	inter
CUST_1844_PI429285431	1.2677364	A	0.92151934	A	1.27122293616392	0	lncRNA	1834-1_{1..481}	"transcript_id ""ENST00000506068.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506068.1"" | genecode_v17"	chr4	112723957	112724437	+	ENSG00000250855.1	ENST00000506068.1	RP11-269F21.1	RP11-269F21.1-001	NA	NA	NA	inter
CUST_24371_PI429285431	1.6900836	A	1.8055016	A	0.923114812827769	0	lncRNA	25924-1_{1..821}	lnc-CTD-2517M22.14.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2517M22.14.1-1:4	chr8	145724135	145724955	-	lnc-CTD-2517M22.14.1-1	lnc-CTD-2517M22.14.1-1:4	ENSG00000255182.1	CTD-2517M22.14	MFSD3	"hg19_refFlat_PPP1R16A:range=chr8:145722578-1457272865'pad=0,hg19_refFlat_PPP1R16A:range=chr8:145722578-1457272865'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.50chr8:145734552-145734688"	NA	inner
CUST_41330_PI429285431	3.2955794	P	3.6109097	P	0.803666972927178	0	lncRNA	42384-1_{1..188}	ENST00000581830 ncrna:miRNA chromosome:GRCh37:2:182953156:182953343:-1 gene:ENSG00000265129 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581830 ncrna:miRNA chromosome:GRCh37:2:182953156:182953343:-1 gene:ENSG00000265129 gene_biotype:miRNA transcript_biotype:miRNA	chr2	182953156	182953343	-	ENSG00000265129	ENST00000581830	NA	NA	PPP1R1C	NA	chr2:182943156-182963343	inner
CUST_48602_PI429285431	0.9419788	A	0.9213367	A	1.01441086297867	0	lncRNA	52448-1_{1..1787}	hg19_lincRNAsTranscripts_TCONS_l2_00014537 range=chr2:43258948-43266681 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014537 range=chr2:43258948-43266681 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 43258948	 43260734	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18436_PI429285431	5.4914813	P	6.091727	P	0.659641604723574	0	lncRNA	20158-1_{1..880}	lnc-CHST1-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHST1-5:4	chr11	 45554973	 45555852	-	lnc-CHST1-5	lnc-CHST1-5:4	ENSG00000254746	RP11-958J22.1	NA	NA	NA	inter
CUST_52173_PI429285431	1.7830358	A	2.8515391	A	0.47681340466565	0	lncRNA	55694-1_{1..284}	hg19_lincRNAsTranscripts_TCONS_l2_00018372 range=chr22:24397664-24401779 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018372 range=chr22:24397664-24401779 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 24397664	 24397947	-	NA	NA	NA	NA	CABIN1	NA	chr22:24407765-24411779	inter
LNCA_21_P0012497	0.92827773	A	1.0704097	A	0.906179042080257	0	lncRNA	ENST00000477805	NA	NA	NA	NA	XLOC_l2_009833	NA	ENST00000477805	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009833), lincRNA [TCONS_l2_00019864]"	chr3:116442327-116442386	hs|3q13.31	Agilent_HUMAN_G3V2	ENST00000477805	ENST00000477805	chr3	116442327	116442386	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27151_PI429285431	6.2270646	P	6.6588025	P	0.741368179898386	0	lncRNA	28687-1_{1..759}	n324275|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322480|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322480|-1.0085000|-0.1068791	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324275|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322480|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322480|-1.0085000|-0.1068791	chr7	   166054	   166812	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46284_PI429285431	11.165893	P	11.144027	P	1.01527179629698	0	lncRNA	50521-1_{1..3000}	"gi|388452913|ref|NR_049767.1| Homo sapiens solute carrier family 7 (amino acid transporter light chain, L system), member 8 (SLC7A8), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388452913|ref|NR_049767.1| Homo sapiens solute carrier family 7 (amino acid transporter light chain, L system), member 8 (SLC7A8), transcript variant 5, non-coding RNA"	Chr14	 23594504	 23597503	-	23428	NR_049767.1	NA	NA	NA	NA	NA	inter
CUST_18487_PI429285431	7.3684993	P	6.618214	P	1.68212544615176	0	lncRNA	20205-1_{1..897}	lnc-GTF2F2-2:23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2F2-2:23	chr13	 45965167	 45966063	+	lnc-GTF2F2-2	lnc-GTF2F2-2:23	ENSG00000170919	XXyac-R12DG2.2	SLC25A30	"hg19_refFlat_RCN1:range=chr11:32112743-321260185'pad=0,hg19_refFlat_RCN1:range=chr11:32112743-321260185'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.80chr13:45967451-45975487"	NA	inter
CUST_16134_PI429285431	5.3335567	P	5.783969	P	0.731833671304257	0	lncRNA	17840-1_{1..488}	lnc-FOXG1-6:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXG1-6:9	chr14	 27204445	 27204932	+	lnc-FOXG1-6	lnc-FOXG1-6:9	XLOC_010776	linc-FOXG1-5	NA	NA	NA	inter
LNCA_21_P0004163	2.9249034	A	2.6481135	A	1.21149621711899	0	lncRNA	ENST00000507948	NA	NA	NA	NA	XLOC_004943	NA	ENST00000507948	NA	NA	"BROAD Institute lincRNA (XLOC_004943), lincRNA [TCONS_00009742]"	chr5:102744701-102744642	hs|5q21.1	Agilent_HUMAN_G3V2	ENST00000507948	ENST00000507948	chr5	102744642	102744701	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2880_PI429285431	1.2684634	A	0.9505783	A	1.24650191565451	0	lncRNA	2861-1_{1..1744}	"transcript_id ""ENST00000561473.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561473.1"" | genecode_v17"	chr7	 86738855	 86740598	+	ENSG00000261462.1	ENST00000561473.1	CTA-254O6.1	CTA-254O6.1-001	NA	NA	NA	inter
CUST_194_PI429201921	0.92802626	A	0.9220273	A	1.0041668193619	0	lncRNA	157-1_{1..3000}	TC09002563.hg.1	TCONS_l2_00029366-XLOC_l2_015215 // Broad TUCP // linc-FAM75A7-31 chr9:-:68773915-68778906 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:-:68773915-68778906	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00029366-XLOC_l2_015215	linc-FAM75A7-31	chr9	 68773915	 68778906	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41482_PI429285431	0.91378844	A	0.9106195	A	1.00219895599164	0	lncRNA	42682-1_{1..120}	ENST00000582634 ncrna:miRNA chromosome:GRCh37:8:131020580:131020699:-1 gene:ENSG00000264653 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582634 ncrna:miRNA chromosome:GRCh37:8:131020580:131020699:-1 gene:ENSG00000264653 gene_biotype:miRNA transcript_biotype:miRNA	chr8	131020580	131020699	-	ENSG00000264653	ENST00000582634	NA	NA	NA	NA	NA	inter
CUST_24987_PI429285431	7.66336	P	7.71127	P	0.967336673333594	0	lncRNA	26527-1_{1..755}	lnc-ATP2B3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATP2B3-1:3	chrX	152869581	152870335	+	lnc-ATP2B3-1	lnc-ATP2B3-1:3	ENSG00000260081.1	RP11-66N11.8	FAM58A	NA	chrX:152859581-152864632	inter
CUST_44987_PI429285431	6.4437475	P	6.533333	P	0.939792721812275	0	lncRNA	49496-1_{1..2024}	"gi|341865583|ref|NR_040583.1| Homo sapiens stromal antigen 3-like 1 (STAG3L1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|341865583|ref|NR_040583.1| Homo sapiens stromal antigen 3-like 1 (STAG3L1), non-coding RNA"	NW_003871064.1	  2888436	  2890459	+	54441	NR_040583.2	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_LOC100289561:range=chr7:102006509-1020209875'pad=0,hg19_refFlat_LOC100289561:range=chr7:102006509-1020209875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90"	NA	Unknown
CUST_41127_PI429285431	1.0599326	A	0.91024816	A	1.10932680300546	0	lncRNA	41903-1_{1..110}	ENST00000384817 ncrna:miRNA chromosome:GRCh37:2:56210102:56210211:-1 gene:ENSG00000207548 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384817 ncrna:miRNA chromosome:GRCh37:2:56210102:56210211:-1 gene:ENSG00000207548 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 56210102	 56210211	-	ENSG00000207548	ENST00000384817	NA	NA	NA	NA	NA	inter
CUST_14548_PI429285431	1.1207572	A	1.355494	A	0.849840026699182	0	lncRNA	16216-1_{1..355}	lnc-ZNF74-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF74-1:5	chr22	 20852954	 20853308	+	lnc-ZNF74-1	lnc-ZNF74-1:5	XLOC_014159	linc-MED15	KLHL22	NA	chr22:20842954-20850170	inter
LNCA_21_P0009125	0.98340726	A	0.94313157	A	1.02831031155165	0	lncRNA	TCONS_00025013	NA	NA	NA	NA	XLOC_011948	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011948), lincRNA [TCONS_00025013]"	chr16:54881339-54880945	hs|16q12.2	Agilent_HUMAN_G3V2	TCONS_00025013	TCONS_00025013	chr16	 54880945	 54881339	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15155_PI429285431	3.399476	P	3.953054	P	0.68132828222378	0	lncRNA	16816-1_{1..806}	lnc-FRG1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FRG1-4:3	chr4	190497624	190498429	+	lnc-FRG1-4	lnc-FRG1-4:3	XLOC_003840	linc-FRG1-4	NA	NA	NA	inter
CUST_12964_PI429285431	0.92601824	A	0.9305341	A	0.99687473820284	0	lncRNA	14590-2_{3001..3403}	lnc-KIAA0947-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA0947-1:2	chr5	  5702273	  5702675	+	lnc-KIAA0947-1	lnc-KIAA0947-1:2	XLOC_004270	linc-UBE2QL1	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10"	NA	inter
CUST_24105_PI429285431	2.0356882	A	2.5147738	A	0.717432198349851	0	lncRNA	25656-1_{1..700}	lnc-PDE1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDE1B-1:1	chr12	 55080864	 55081563	+	lnc-PDE1B-1	lnc-PDE1B-1:1	ENSG00000257634.1	RP11-850F7.7	NA	NA	NA	inter
LNCA_21_P0010917	1.0048298	A	0.96790683	A	1.02592336661782	0	lncRNA	ENST00000419779	NA	NA	NA	NA	XLOC_l2_001557	NA	ENST00000419779	THC2679489	NA	"BROAD Institute lincRNA (XLOC_l2_001557), lincRNA [TCONS_l2_00003942]"	chr10:38466872-38466931	hs|10p11.1	Agilent_HUMAN_G3V2	ENST00000419779	ENST00000419779	chr10	 38466872	 38466931	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13203_PI429285431	1.4303594	A	1.3769329	A	1.03772667152928	0	lncRNA	14831-1_{1..655}	lnc-SYTL5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYTL5-1:1	chrX	 38082675	 38083329	+	lnc-SYTL5-1	lnc-SYTL5-1:1	XLOC_007953	linc-OTC	SRPX	NA	chrX:38072675-38080177	inter
CUST_9726_PI429285431	1.992077	A	1.4237084	A	1.48284581969406	0	lncRNA	11242-1_{1..778}	lnc-RAD23B-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAD23B-5:3	chr9	110276945	110277722	+	lnc-RAD23B-5	lnc-RAD23B-5:3	XLOC_007507	linc-ACTL7A-9	NA	NA	NA	inter
CUST_6773_PI429285431	6.364076	P	7.185316	P	0.565955293547902	0	lncRNA	6720-1_{1..621}	"transcript_id ""ENST00000602892.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602892.1"" | genecode_v17"	chr21	 17791648	 17792268	+	ENSG00000215386.6	ENST00000602892.1	LINC00478	LINC00478-016	NA	NA	NA	inter
CUST_15016_PI429285431	0.93082845	A	0.9478854	A	0.988246639959557	0	lncRNA	16678-1_{1..371}	lnc-KATNAL1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KATNAL1-3:5	chr13	 30948789	 30949159	-	lnc-KATNAL1-3	lnc-KATNAL1-3:5	XLOC_010556	linc-KATNAL1-3	NA	NA	NA	inter
CUST_3082_PI429285431	0.91698533	A	0.9178823	A	0.999378461008885	0	lncRNA	3061-1_{1..680}	"transcript_id ""ENST00000518465.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518465.1"" | genecode_v17"	chr8	 39413665	 39414344	+	ENSG00000254067.1	ENST00000518465.1	RP11-122L4.1	RP11-122L4.1-001	NA	NA	NA	inter
CUST_45184_PI429285431	0.92993706	A	0.92508507	A	1.00336880489993	0	lncRNA	49655-2_{3001..4078}	"gi|338753359|ref|NR_040009.1| Homo sapiens inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta (IKBKB), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|338753359|ref|NR_040009.1| Homo sapiens inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta (IKBKB), transcript variant 8, non-coding RNA"	Chr8	 42131820	 42132897	+	3551	NR_040009.1	NA	NA	NA	NA	NA	inter
CUST_39652_PI429285431	0.92518294	A	0.9635198	A	0.973776871368781	0	lncRNA	40591-1_{1..412}	n405229|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000323324||-1.0259600|-0.3116377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405229|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000323324||-1.0259600|-0.3116377	chr2	  8782854	  8783265	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15274_PI429285431	5.6621304	P	5.6937985	P	0.978288508261164	0	lncRNA	16948-1_{1..953}	lnc-RP11-201M22.1.1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-201M22.1.1-1:7	chr11	 91533387	 91534339	+	lnc-RP11-201M22.1.1-1	lnc-RP11-201M22.1.1-1:7	XLOC_009248	linc-FAT3-3	NA	NA	NA	inter
LNCA_21_P0005503	6.7770877	P	7.179695	P	0.75648988633277	0	lncRNA	TCONS_00013856	NA	NA	NA	NA	XLOC_006486	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006486), lincRNA [TCONS_00013856]"	chr7:66798498-66798439	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_00013856	TCONS_00013856	chr7	 66798439	 66798498	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41774_PI429285431	6.7212505	P	6.732916	P	0.991946694588585	0	lncRNA	43338-1_{1..63}	ENST00000583592 ncrna:miRNA chromosome:GRCh37:2:219923410:219923472:-1 gene:ENSG00000264755 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583592 ncrna:miRNA chromosome:GRCh37:2:219923410:219923472:-1 gene:ENSG00000264755 gene_biotype:miRNA transcript_biotype:miRNA	chr2	219923410	219923472	-	ENSG00000264755	ENST00000583592	NA	NA	IHH	NA	chr2:219919142-219925238	inner
LNCA_21_P0009096	1.0327497	A	0.9968558	A	1.02519183951893	0	lncRNA	TCONS_00024822	NA	NA	NA	NA	XLOC_011681	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011681), lincRNA [TCONS_00024822]"	chr16:27301777-27301836	hs|16p12.1	Agilent_HUMAN_G3V2	TCONS_00024822	TCONS_00024822	chr16	 27301777	 27301836	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2287_PI429285431	1.0054052	A	1.3218212	A	0.803062400945766	0	lncRNA	2279-1_{1..275}	"transcript_id ""ENST00000524336.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524336.1"" | genecode_v17"	chr5	103718999	103719273	-	ENSG00000251574.2	ENST00000524336.1	RP11-6N13.1	RP11-6N13.1-008	NA	NA	NA	inter
CUST_21934_PI429285431	4.2499037	P	4.2812505	P	0.978506405386107	0	lncRNA	23542-1_{1..460}	lnc-ESRP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ESRP2-1:1	chr16	 68255352	 68255811	-	lnc-ESRP2-1	lnc-ESRP2-1:1	ENSG00000260891.1	RP11-96D1.5	NFATC3	NA	chr16:68245352-68263162	inner
CUST_48922_PI429285431	0.9795245	A	0.9303345	A	1.03468383830155	0	lncRNA	52765-1_{1..2714}	hg19_lincRNAsTranscripts_TCONS_l2_00018859 range=chr3:129964593-129992631 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018859 range=chr3:129964593-129992631 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	129964593	129967306	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49817_PI429285431	2.6839225	A	1.9174628	A	1.70109026877373	0	lncRNA	53575-1_{1..387}	hg19_lincRNAsTranscripts_TCONS_l2_00026622 range=chr7:64520284-64541655 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026622 range=chr7:64520284-64541655 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 64520284	 64520670	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008249	1.0439352	A	1.0015496	A	1.02981529316508	0	lncRNA	ENST00000415283	NA	NA	NA	NA	XLOC_010560	NA	ENST00000415283	NA	NA	"BROAD Institute lincRNA (XLOC_010560), lincRNA [TCONS_00022252]"	chr13:31569533-31569474	hs|13q12.3	Agilent_HUMAN_G3V2	ENST00000415283	ENST00000415283	chr13	 31569474	 31569533	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32617_PI429285431	0.92099184	A	0.9106766	A	1.00717560165589	0	lncRNA	34276-1_{1..2678}	n339240|AK095129|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1672|NULL|-1.0422800|-0.3329056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339240|AK095129|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1672|NULL|-1.0422800|-0.3329056	chr16	 65895014	 65897691	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29516_PI429285431	0.9111905	A	0.9069142	A	1.00296850259193	0	lncRNA	31274-1_{1..539}	n332953|AF090428|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000068211|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000068211|-0.7387180|-0.0952251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332953|AF090428|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000068211|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000068211|-0.7387180|-0.0952251	chr15	 52632393	 52632931	+	NA	NA	NA	NA	MYO5A	"hg19_refFlat_MYO5A:range=chr15:52605893-528210035'pad=0,hg19_refFlat_MYO5A:range=chr15:52605893-528210035'pad=0 3'pad=0 strand=- repeatMasking=none,-101.20chr15:52622393-52653678"	NA	inner
CUST_24870_PI429285431	1.0152096	A	1.1052018	A	0.939527828802592	0	lncRNA	26411-1_{1..1000}	lnc-TRIM41-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM41-2:1	chr5	180698917	180699916	+	lnc-TRIM41-2	lnc-TRIM41-2:1	ENSG00000233937.2	CTC-338M12.4	NA	NA	NA	inter
CUST_20504_PI429285431	4.4925857	P	5.0159664	P	0.695739579142645	0	lncRNA	22146-1_{1..2225}	lnc-BATF3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BATF3-3:1	chr1	212798576	212800800	-	lnc-BATF3-3	lnc-BATF3-3:1	ENSG00000235862.2	RP11-338C15.5	ATF3	"hg19_refFlat_FAM71A:range=chr1:212798220-2128000045'pad=0,hg19_refFlat_FAM71A:range=chr1:212798220-2128000045'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.30chr1:212788576-212794117"	NA	inner
CUST_35165_PI429285431	0.9246868	A	0.9200299	A	1.00323313243961	0	lncRNA	36567-1_{1..1337}	n342142|BC039503|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4627|NULL|-1.2305800|-0.3268784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n342142|BC039503|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4627|NULL|-1.2305800|-0.3268784	chr6	140092209	140093545	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50683_PI429285431	0.9229058	A	1.1626973	A	0.846867693843426	0	lncRNA	54355-1_{1..227}	hg19_lincRNAsTranscripts_TCONS_l2_00003543 range=chr10:47625276-47640787 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003543 range=chr10:47625276-47640787 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 47625276	 47625502	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26012_PI429285431	3.3303275	P	3.008131	A	1.25023257694297	0	lncRNA	27531-1_{1..525}	lnc-FGG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FGG-1:1	chr4	155702941	155703465	-	lnc-FGG-1	lnc-FGG-1:1	ENSG00000249041.1	RP11-21G20.3	RBM46	NA	chr4:155702427-155713025	inner
CUST_44799_PI429285431	1.753023	A	1.4872015	A	1.20232048046342	0	lncRNA	49333-1_{1..529}	"gi|310119833|ref|XR_110212.1| PREDICTED: Homo sapiens uncharacterized LOC100287612 (LOC100287612), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119833|ref|XR_110212.1| PREDICTED: Homo sapiens uncharacterized LOC100287612 (LOC100287612), misc_RNA"	NA	NA	NA	NA	NA	XR_110212.1	NA	NA	NA	NA	NA	Unknown
CUST_35881_PI429285431	2.0731313	A	1.5122232	A	1.47519748367686	0	lncRNA	37268-2_{3001..4985}	n344541|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_89|NULL|-1.3457300|-0.2149630	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344541|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_89|NULL|-1.3457300|-0.2149630	chr12	132592590	132594574	+	NA	NA	NA	NA	DDX51	"hg19_refFlat_PLAC8:range=chr4:84015840-840290745'pad=0,hg19_refFlat_PLAC8:range=chr4:84015840-840290745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00chr12:132621139-132625587"	NA	inter
CUST_2479_PI429285431	1.2526466	A	1.5036552	A	0.840308743082682	0	lncRNA	2471-1_{1..434}	"transcript_id ""ENST00000449333.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449333.1"" | genecode_v17"	chr6	 10434549	 10434982	+	ENSG00000229401.1	ENST00000449333.1	RP1-290I10.7	RP1-290I10.7-001	NA	NA	NA	inter
CUST_12988_PI429285431	6.3529253	P	7.094209	P	0.598206835153751	0	lncRNA	14615-1_{1..551}	lnc-PPP1R3B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP1R3B-3:1	chr8	  9217110	  9217660	-	lnc-PPP1R3B-3	lnc-PPP1R3B-3:1	XLOC_007000	linc-PPP1R3B-5	NA	NA	NA	inter
CUST_24995_PI429285431	1.6679324	A	2.7827103	A	0.461762237260831	0	lncRNA	26536-1_{1..451}	lnc-TMCO2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMCO2-1:1	chr1	 40748968	 40749418	+	lnc-TMCO2-1	lnc-TMCO2-1:1	ENSG00000225627.1	RP1-39G22.5	ZMPSTE24	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10chr1:40738968-40759177"	NA	inner
CUST_38789_PI429285431	1.4254175	A	0.9053444	A	1.43402790701951	0	lncRNA	39782-1_{1..2422}	n384471|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hoi.2||-0.1808360|-0.3469591	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384471|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hoi.2||-0.1808360|-0.3469591	chr4	 84213614	 84216035	-	NA	NA	NA	NA	HPSE	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50chr4:84213614-84226036"	NA	inner
CUST_23713_PI429285431	0.9120857	A	0.913774	A	0.998830444079318	0	lncRNA	25278-1_{1..142}	lnc-SNURFL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNURFL-2:1	chrX	137709433	137709574	+	lnc-SNURFL-2	lnc-SNURFL-2:1	ENSG00000232183.1	RP6-27P15.2	FGF13	NA	chrX:137713734-137719504	inter
LNCA_19_P00317704	2.905427	A	3.3576164	P	0.730932759530848	0	lncRNA	XR_109941	XR_109941	XR_109941	NA	Hs.442789	LOC100507006	NA	NA	THC2726578	NA	"PREDICTED: Homo sapiens hypothetical LOC100507006 (LOC100507006), miscRNA [XR_109941]"	chr2:64478800-64478859	hs|2p14	Agilent_HUMAN_G3V2	XR_109941	XR_109941	chr2	 64478800	 64478859	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42212_PI429285431	0.9106199	A	0.909433	A	1.0008230348961	0	lncRNA	44305-1_{1..107}	ENST00000583829 ncrna:miRNA chromosome:GRCh37:X:113870731:113870837:1 gene:ENSG00000263653 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583829 ncrna:miRNA chromosome:GRCh37:X:113870731:113870837:1 gene:ENSG00000263653 gene_biotype:miRNA transcript_biotype:miRNA	chrX	113870731	113870837	+	ENSG00000263653	ENST00000583829	NA	NA	HTR2C	NA	chrX:113860731-113880837	inner
CUST_24961_PI429285431	0.91672397	A	0.9289243	A	0.991579032323758	0	lncRNA	26499-1_{1..2100}	lnc-KAT7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KAT7-2:1	chr17	 47924294	 47926393	+	lnc-KAT7-2	lnc-KAT7-2:1	ENSG00000204584.1	RP11-304F15.3	TAC4	"hg19_refFlat_TAC4:range=chr17:47916004-479253795'pad=0,hg19_refFlat_TAC4:range=chr17:47916004-479253795'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10chr17:47915671-47925379"	NA	inner
CUST_24837_PI429285431	4.2209415	P	4.588325	P	0.775187117210448	0	lncRNA	26377-1_{1..443}	lnc-TRIM36-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM36-4:1	chr5	114004040	114004482	-	lnc-TRIM36-4	lnc-TRIM36-4:1	ENSG00000246316.3	RP11-492A10.1	NA	"hg19_refFlat_KCNN2:range=chr5:113798789-1138318795'pad=0,hg19_refFlat_KCNN2:range=chr5:113798789-1138318795'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.10;hg19_refFlat_KCNN2:range=chr5:113698473-1138318795'pad=0,hg19_refFlat_KCNN2:range=chr5:113698473-1138318795'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.10"	NA	inter
CUST_50856_PI429285431	0.9714394	A	0.92640185	A	1.03171003196699	0	lncRNA	54500-1_{1..1294}	hg19_lincRNAsTranscripts_TCONS_l2_00005148 range=chr11:89603220-89607326 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005148 range=chr11:89603220-89607326 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	 89603220	 89604513	-	NA	NA	NA	NA	TRIM64B	NA	chr11:89593220-89609185	inter
CUST_8943_PI429285431	6.438824	P	5.929923	P	1.4229658117349	0	lncRNA	10477-1_{1..2659}	lnc-ZNF527-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF527-1:1	chr19	 37819127	 37821785	+	lnc-ZNF527-1	lnc-ZNF527-1:1	ENSG00000248454	ENST00000504080	HKR1	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80chr19:37825580-37830601"	NA	inter
CUST_43235_PI429285431	0.92938244	A	1.5468245	A	0.651825609419101	0	lncRNA	48052-1_{1..752}	ENST00000602578 havana:sense_intronic chromosome:GRCh37:8:48439959:48440710:1 gene:ENSG00000269924 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602578 havana:sense_intronic chromosome:GRCh37:8:48439959:48440710:1 gene:ENSG00000269924 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr8	 48439959	 48440710	+	ENSG00000269924	ENST00000602578	NA	NA	KIAA0146	NA	chr8:48429959-48450710	inner
CUST_50456_PI429285431	0.92341447	A	1.003742	A	0.945842890951547	0	lncRNA	54161-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00030253 range=chrX:73164177-73234961 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030253 range=chrX:73164177-73234961 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 73170177	 73173176	+	NA	NA	NA	NA	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_28310_PI429285431	0.91745114	A	0.92461014	A	0.995050050910925	0	lncRNA	29955-1_{1..602}	n325615|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316372|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316372|-1.2318100|-0.2489074	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325615|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316372|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316372|-1.2318100|-0.2489074	chr14	 53305409	 53306010	-	NA	NA	NA	NA	FERMT2	NA	chr14:53323989-53397350	inner
CUST_3994_PI429285431	0.9155888	A	0.9114175	A	1.0028955087453	0	lncRNA	3954-1_{1..613}	"transcript_id ""ENST00000533670.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533670.1"" | genecode_v17"	chr11	 67654061	 67654673	+	ENSG00000251637.2	ENST00000533670.1	RP11-119D9.1	RP11-119D9.1-003	NA	NA	NA	inter
CUST_15372_PI429285431	6.9828897	P	7.133025	P	0.901165944769974	0	lncRNA	17055-1_{1..486}	lnc-CTD-2144E22.5.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2144E22.5.1-4:1	chr16	 34478641	 34479126	+	lnc-CTD-2144E22.5.1-4	lnc-CTD-2144E22.5.1-4:1	XLOC_011699	linc-ORC6-4	NA	NA	NA	inter
CUST_46673_PI429285431	7.7549458	P	8.224744	P	0.7220655911394	0	lncRNA	50841-1_{1..1445}	"gi|297632393|ref|NR_027910.2| Homo sapiens calbindin 2 (CALB2), transcript variant CALB2b, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|297632393|ref|NR_027910.2| Homo sapiens calbindin 2 (CALB2), transcript variant CALB2b, non-coding RNA"	Chr16	 71392616	 71394060	+	794	NR_027910.2	NA	NA	NA	NA	NA	inter
CUST_6052_PI429285431	8.674585	P	7.2180505	P	2.74448318465229	0	lncRNA	5978-1_{1..450}	"transcript_id ""ENST00000581442.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581442.1"" | genecode_v17"	chr18	  3466248	  3466697	+	ENSG00000266835.1	ENST00000581442.1	RP11-838N2.4	RP11-838N2.4-001	TGIF1	NA	chr18:3456248-3458409	inter
CUST_8280_PI429285431	0.9141196	A	0.90548694	A	1.0060016420571	0	lncRNA	9864-1_{1..564}	lnc-JMJD1C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JMJD1C-2:1	chr10	 65646714	 65647277	-	lnc-JMJD1C-2	lnc-JMJD1C-2:1	ENSG00000251397	XLOC_008837	NA	NA	NA	inter
CUST_18640_PI429285431	3.838764	P	3.9012027	P	0.957643970051876	0	lncRNA	20344-1_{1..517}	lnc-GTF2F2-2:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2F2-2:16	chr13	 45952665	 45953181	+	lnc-GTF2F2-2	lnc-GTF2F2-2:16	ENSG00000170919	XXyac-R12DG2.2	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.11;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70"	NA	inter
CUST_2502_PI429285431	1.0396211	A	2.1645896	A	0.458512032707209	0	lncRNA	2494-1_{1..1202}	"transcript_id ""ENST00000439406.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439406.1"" | genecode_v17"	chr6	 30734602	 30735803	+	ENSG00000228022.1	ENST00000439406.1	HCG20	HCG20-001	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00"	NA	inter
CUST_972_PI429285431	3.9101245	P	4.3589544	P	0.732636813270086	0	lncRNA	961-1_{1..581}	"transcript_id ""ENST00000441036.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441036.1"" | genecode_v17"	chr2	100859093	100859673	+	ENSG00000232084.1	ENST00000441036.1	AC104782.3	AC104782.3-002	NA	NA	NA	inter
LNCA_21_P0004491	0.9795756	A	0.9225074	A	1.040349445422	0	lncRNA	TCONS_00010636	NA	NA	NA	NA	XLOC_004308	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004308), lincRNA [TCONS_00010636]"	chr5:17412140-17412199	hs|5p15.1	Agilent_HUMAN_G3V2	TCONS_00010636	TCONS_00010636	chr5	 17412140	 17412199	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30374_PI429285431	3.7227764	P	3.200684	A	1.43603648121876	0	lncRNA	32150-1_{1..313}	n335483|BC054008|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259394|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259394|1.6385200|-0.0820511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335483|BC054008|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259394|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259394|1.6385200|-0.0820511	chr6	  7590459	  7590771	+	NA	NA	NA	NA	SNRNP48	NA	chr6:7590432-7604093	inner
CUST_34738_PI429285431	5.9887924	P	5.7691984	P	1.16440585587379	0	lncRNA	36183-1_{1..3000}	n341645|CR627004|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4116|NULL|-1.2714900|-0.3358989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341645|CR627004|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4116|NULL|-1.2714900|-0.3358989	chr9	  2423836	  2426835	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22528_PI429285431	4.025982	P	4.8133793	P	0.579388397730461	0	lncRNA	24116-1_{1..804}	lnc-KIFC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIFC3-1:1	chr16	 57735562	 57736365	-	lnc-KIFC3-1	lnc-KIFC3-1:1	ENSG00000260467.1	RP11-405F3.4	CCDC135	"hg19_refFlat_CCDC135:range=chr16:57731862-577651705'pad=0,hg19_refFlat_CCDC135:range=chr16:57731862-577651705'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.50;hg19_refFlat_GPR97:range=chr16:57702260-577223735'pad=0,hg19_refFlat_GPR97:range=chr16:57702260-577223735'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.50chr16:57728713-57745642"	NA	inner
CUST_14841_PI429285431	5.374831	P	5.5592318	P	0.880014499788716	0	lncRNA	16503-1_{1..384}	lnc-C21orf62-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C21orf62-1:1	chr21	 34222205	 34222588	-	lnc-C21orf62-1	lnc-C21orf62-1:1	XLOC_014056	linc-C21orf62-1	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40"	NA	inter
CUST_18142_PI429285431	3.320272	P	3.2201352	P	1.07187509563068	0	lncRNA	19877-1_{1..463}	lnc-PLCD1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLCD1-1:8	chr3	 37903192	 37903654	-	lnc-PLCD1-1	lnc-PLCD1-1:8	ENSG00000235257	AC093415.2	CTDSPL	"hg19_refFlat_ITGA9:range=chr3:37493866-378604805'pad=0,hg19_refFlat_ITGA9:range=chr3:37493866-378604805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60chr3:37903669-37913211"	NA	inter
LNCA_21_P0011487	3.2418737	P	3.41158	P	0.889023647803391	0	lncRNA	THC2630320	NA	NA	NA	NA	XLOC_l2_005517	NA	NA	THC2630320	NA	"BROAD Institute lincRNA (XLOC_l2_005517), lincRNA [TCONS_l2_00010221]"	chr16:063565196-063565137	hs|16q21	Agilent_HUMAN_G3V2	THC2630320	THC2630320	chr16	 63565137	 63565196	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36783_PI429285431	1.3513017	A	2.0972445	A	0.596278076941019	0	lncRNA	37955-1_{1..1257}	n345262|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_811|NULL|-1.3239300|-0.3570893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345262|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_811|NULL|-1.3239300|-0.3570893	chr14	 61105316	 61106572	-	NA	NA	NA	NA	SIX1	NA	chr14:61095316-61116155	inter
CUST_7234_PI429285431	0.9351835	A	0.91657394	A	1.01298271713047	0	lncRNA	7816-1_{1..315}	"transcript_id ""ENST00000363328.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000363328.1"" | genecode_v17"	chr6	106352248	106352562	+	ENSG00000200198.1	ENST00000363328.1	RN7SKP211	RN7SKP211-201	NA	NA	NA	inter
CUST_29932_PI429285431	0.9286676	A	1.2975771	A	0.774367602269853	0	lncRNA	31696-1_{1..542}	n334116|M60500|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195946|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195946|2.0942600|-0.0506227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334116|M60500|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195946|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195946|2.0942600|-0.0506227	chr1	152286183	152286724	-	NA	NA	NA	NA	FLG	NA	chr1:152276183-152296725	inner
CUST_29087_PI429285431	0.9368087	A	0.9062521	A	1.02140611402278	0	lncRNA	30818-1_{1..754}	n326580|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025343|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025343|-1.3526500|-0.3191139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326580|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025343|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025343|-1.3526500|-0.3191139	chr1	 63488281	 63489034	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25556_PI429285431	2.6463194	A	2.4565878	A	1.14055150712481	0	lncRNA	27085-1_{1..397}	lnc-CHD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHD1-1:1	chr5	 98109012	 98109408	-	lnc-CHD1-1	lnc-CHD1-1:1	ENSG00000246763.2	CTC-463N11.3	RGMB	NA	chr5:98099012-98119173	inner
CUST_34201_PI429285431	1.9168955	A	2.4225116	A	0.704359518026934	0	lncRNA	35716-1_{1..3000}	n341056|AL137634|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3522|NULL|-0.5440220|-0.1624828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341056|AL137634|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3522|NULL|-0.5440220|-0.1624828	chr11	 67776908	 67779907	-	NA	NA	NA	NA	UNC93B1	NA	chr11:67766908-67771593	inner
CUST_10500_PI429285431	6.974853	P	6.7382345	P	1.17822780117982	0	lncRNA	12027-1_{1..275}	lnc-CAND2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CAND2-1:1	chr3	 12918590	 12918864	+	lnc-CAND2-1	lnc-CAND2-1:1	XLOC_002578	linc-HDAC11-2	NA	NA	NA	inter
CUST_3028_PI429285431	1.01078	A	1.4842945	A	0.720207985001132	0	lncRNA	3007-1_{1..759}	"transcript_id ""ENST00000521139.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521139.1"" | genecode_v17"	chr8	 20207767	 20208525	+	ENSG00000253164.1	ENST00000521139.1	RP11-563N12.2	RP11-563N12.2-001	NA	NA	NA	inter
CUST_12100_PI429285431	3.169969	A	4.053199	P	0.542152265529218	0	lncRNA	13696-1_{1..338}	lnc-TMEM98-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM98-2:2	chr17	 31233209	 31233546	+	lnc-TMEM98-2	lnc-TMEM98-2:2	XLOC_012170	linc-TMEM98	NA	NA	NA	inter
CUST_45962_PI429285431	4.275584	P	2.9725833	P	2.46741553681619	0	lncRNA	50255-1_{1..2096}	"gi|380034210|ref|NR_046432.1| Homo sapiens RAD9-HUS1-RAD1 interacting nuclear orphan 1 (RHNO1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|380034210|ref|NR_046432.1| Homo sapiens RAD9-HUS1-RAD1 interacting nuclear orphan 1 (RHNO1), transcript variant 6, non-coding RNA"	Chr12	  2986365	  2988460	+	83695	NR_046432.1	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30"	NA	inter
CUST_2421_PI429285431	0.9139481	A	0.9046757	A	1.00644783628793	0	lncRNA	2413-1_{1..533}	"transcript_id ""ENST00000520075.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520075.1"" | genecode_v17"	chr5	165555503	165556035	+	ENSG00000254171.1	ENST00000520075.1	RP11-67M9.1	RP11-67M9.1-001	NA	NA	NA	inter
CUST_20282_PI429285431	1.2103527	A	0.97950155	A	1.17352709342663	0	lncRNA	21925-1_{1..384}	lnc-NOC3L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NOC3L-2:1	chr10	 95986883	 95987266	-	lnc-NOC3L-2	lnc-NOC3L-2:1	ENSG00000228553.1	RP11-391J2.3	PLCE1	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-60.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-30.60chr10:95976883-95997045"	NA	inner
CUST_20268_PI429285431	8.20855	P	8.275004	P	0.954982366817868	0	lncRNA	21911-1_{1..473}	lnc-C20orf196-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C20orf196-1:1	chr20	  5516254	  5516726	+	lnc-C20orf196-1	lnc-C20orf196-1:1	ENSG00000235820.1	RP5-1022P6.5	GPCPD1	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-58.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50chr20:5513524-5526535"	NA	inter
CUST_31334_PI429285431	3.1841502	A	3.3264363	P	0.906082235817471	0	lncRNA	33116-1_{1..978}	n337800|BC022066|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|182|NULL|-0.8387760|-0.2250686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337800|BC022066|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|182|NULL|-0.8387760|-0.2250686	chrX	101854453	101855430	+	NA	NA	NA	NA	GPRASP1	NA	chrX:101906294-101914011	inner
CUST_9192_PI429285431	4.54086	P	5.1246157	P	0.667224560315421	0	lncRNA	10705-1_{1..1999}	lnc-ADD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ADD1-1:1	chr4	  2948600	  2950598	+	lnc-ADD1-1	lnc-ADD1-1:1	ENSG00000249673	RP11-520M5.5	NOP14	"hg19_refFlat_NOP14:range=chr4:2940558-29650465'pad=0,hg19_refFlat_NOP14:range=chr4:2940558-29650465'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70chr4:2939663-2959400"	NA	inner
CUST_16602_PI429285431	0.9171671	A	0.90359056	A	1.00945495878254	0	lncRNA	18303-1_{1..424}	lnc-RP11-327F22.5.1-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-327F22.5.1-7:2	chr16	 51806287	 51806710	+	lnc-RP11-327F22.5.1-7	lnc-RP11-327F22.5.1-7:2	XLOC_011722	linc-CHD9-6	NA	NA	NA	inter
CUST_35189_PI429285431	1.0391617	A	0.9064416	A	1.09635886129155	0	lncRNA	36590-1_{1..1276}	n342169|CR624435|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4656|NULL|-1.2788300|-0.5062144	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342169|CR624435|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4656|NULL|-1.2788300|-0.5062144	chr6	163898509	163899784	+	NA	NA	NA	NA	QKI	NA	chr6:163888509-163909785	inner
CUST_20949_PI429285431	0.9356203	A	0.93110424	A	1.00313519874347	0	lncRNA	22580-1_{1..817}	lnc-OSBPL1A-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OSBPL1A-5:1	chr18	 21595268	 21596084	-	lnc-OSBPL1A-5	lnc-OSBPL1A-5:1	ENSG00000264745.1	RP11-403A21.2	TTC39C	NA	chr18:21585268-21605303	inner
CUST_45744_PI429285431	7.2766643	P	7.649817	P	0.772093407640714	0	lncRNA	50093-1_{1..1635}	"gi|372266104|ref|NR_045926.1| Homo sapiens post-GPI attachment to proteins 2 (PGAP2), transcript variant 14, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372266104|ref|NR_045926.1| Homo sapiens post-GPI attachment to proteins 2 (PGAP2), transcript variant 14, non-coding RNA"	Chr11	  3819049	  3820683	+	27315	NR_045926.1	NA	NA	NA	NA	NA	inter
CUST_37760_PI429285431	0.9006231	A	0.8968282	A	1.00263388683671	0	lncRNA	38857-1_{1..943}	n346268|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1818|NULL|-1.3188800|-0.3781201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n346268|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1818|NULL|-1.3188800|-0.3781201	chr11	 27532591	 27533533	+	NA	NA	NA	NA	LIN7C	NA	chr11:27522591-27528326	inter
CUST_9869_PI429285431	2.0927799	A	2.759531	A	0.629923657758559	0	lncRNA	11392-1_{1..2402}	lnc-POTEC-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POTEC-5:1	chr18	 15302825	 15305226	-	lnc-POTEC-5	lnc-POTEC-5:1	XLOC_012784	linc-POTEC-3	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80"	NA	inter
CUST_37304_PI429285431	0.91203034	A	1.6455553	A	0.601432627155776	0	lncRNA	38412-1_{1..3000}	n345747|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1296|NULL|-1.3347700|-0.3471780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345747|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1296|NULL|-1.3347700|-0.3471780	chr14	 54152166	 54155165	-	NA	NA	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40"	NA	inter
CUST_38122_PI429285431	0.94377536	A	0.94008386	A	1.00256202921893	0	lncRNA	39195-2_{3001..4847}	n381231|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001elb.3||-1.2080400|-0.3648869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381231|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001elb.3||-1.2080400|-0.3648869	chr1	144517873	144519719	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34616_PI429285431	1.488804	A	1.2027642	A	1.21928873044486	0	lncRNA	36071-1_{1..966}	n341501|CR624430|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3971|NULL|-0.8449390|-0.2131786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341501|CR624430|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3971|NULL|-0.8449390|-0.2131786	chr8	 54426635	 54427600	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10815_PI429285431	4.2012067	P	3.644483	P	1.47092501237109	0	lncRNA	12350-1_{1..607}	lnc-FAM120B-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM120B-6:1	chr6	170455748	170456354	+	lnc-FAM120B-6	lnc-FAM120B-6:1	XLOC_005560	linc-FAM120B-5	NA	NA	NA	inter
CUST_6094_PI429285431	2.8948975	P	3.6915011	P	0.575702906104361	0	lncRNA	6020-1_{1..566}	"transcript_id ""ENST00000580200.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580200.1"" | genecode_v17"	chr18	 14244624	 14245189	+	ENSG00000264222.1	ENST00000580200.1	RP11-757O6.1	RP11-757O6.1-001	LOC100652806	NA	chr18:14234721-14249475	inter
CUST_27829_PI429285431	0.9069896	A	1.1328359	A	0.855093271873352	0	lncRNA	29415-1_{1..632}	n325057|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078135|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078135|-0.6251790|-0.1152173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325057|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078135|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078135|-0.6251790|-0.1152173	chr20	 17816006	 17816637	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35783_PI429285431	3.3274987	P	0.9085157	A	5.3479389637994	0	lncRNA	37196-2_{3001..6000}	n344466|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_14|NULL|-1.2771200|-0.3167784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344466|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_14|NULL|-1.2771200|-0.3167784	NA	     3000	     5999	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15387_PI429285431	0.9259137	A	0.9120674	A	1.00964372773393	0	lncRNA	17071-1_{1..1592}	lnc-QSOX2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-QSOX2-1:3	chr9	139166729	139168320	-	lnc-QSOX2-1	lnc-QSOX2-1:3	XLOC_007895	linc-QSOX2	NA	NA	NA	inter
CUST_33806_PI429285431	1.0615759	A	1.4962898	A	0.739840457401054	0	lncRNA	35358-1_{1..695}	n340595|BC033997|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3057|NULL|-1.2918300|-0.3697593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340595|BC033997|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3057|NULL|-1.2918300|-0.3697593	chr17	 27253292	 27253986	+	NA	NA	NA	NA	PHF12	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20chr17:27243292-27278508"	NA	inner
CUST_7847_PI429285431	4.697383	P	4.368554	P	1.25599350171188	0	lncRNA	9471-1_{1..392}	lnc-SHANK2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHANK2-1:3	chr11	 70244204	 70244595	-	lnc-SHANK2-1	lnc-SHANK2-1:3	ENSG00000246889	ENSG00000246889.2	CTTN	NA	chr11:70244612-70254408	inter
CUST_50308_PI429285431	0.9117499	A	0.89594525	A	1.01101517375681	0	lncRNA	54027-1_{1..372}	hg19_lincRNAsTranscripts_TCONS_l2_00029513 range=chr9:99967253-99973962 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029513 range=chr9:99967253-99973962 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 99967253	 99967624	-	NA	NA	NA	NA	ZNF322B	NA	chr9:99960585-99961793	inter
CUST_48821_PI429285431	4.942069	P	4.976506	P	0.976412723557539	0	lncRNA	52659-1_{1..1235}	hg19_lincRNAsTranscripts_TCONS_l2_00015637 range=chr2:243030784-243082789 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015637 range=chr2:243030784-243082789 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	243030784	243032018	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60"	NA	inter
CUST_44505_PI429285431	1.1082063	A	0.909488	A	1.14767829681508	0	lncRNA	49104-1_{1..575}	"gi|157278029|ref|NR_003921.1| Homo sapiens pro-melanin-concentrating hormone-like 1, pseudogene (PMCHL1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|157278029|ref|NR_003921.1| Homo sapiens pro-melanin-concentrating hormone-like 1, pseudogene (PMCHL1), non-coding RNA"	Chr5	 22142461	 22143035	+	5369	NR_003921.1	NA	NA	NA	NA	NA	inter
CUST_2861_PI429285431	3.494872	P	3.4944947	P	1.00026155863172	0	lncRNA	2843-1_{1..682}	"transcript_id ""ENST00000412091.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412091.1"" | genecode_v17"	chr7	 65956996	 65957677	-	ENSG00000223473.1	ENST00000412091.1	GS1-124K5.3	GS1-124K5.3-002	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40"	NA	inter
CUST_8123_PI429285431	2.0317178	A	2.146198	A	0.923715063382404	0	lncRNA	9728-1_{1..2741}	lnc-MTERF-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTERF-5:1	chr7	 90895838	 90898578	-	lnc-MTERF-5	lnc-MTERF-5:1	ENSG00000244947	ENST00000500468	FZD1	"hg19_refFlat_FZD1:range=chr7:90894196-908961395'pad=0,hg19_refFlat_FZD1:range=chr7:90894196-908961395'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.30chr7:90893783-90898132"	NA	inner
CUST_41041_PI429285431	0.92310256	A	0.9116615	A	1.00796186690441	0	lncRNA	41700-1_{1..615}	n411707|NR_044996_3|lncRNA|Homosapiens||RefGeneNoncode|NR_044996_3||-0.8730270|-0.2200040	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411707|NR_044996_3|lncRNA|Homosapiens||RefGeneNoncode|NR_044996_3||-0.8730270|-0.2200040	chr6	  3637185	  3637799	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
CUST_41933_PI429285431	0.9031395	A	1.1514192	A	0.841899715937305	0	lncRNA	43682-1_{1..72}	ENST00000582500 ncrna:miRNA chromosome:GRCh37:14:31779519:31779590:1 gene:ENSG00000263784 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582500 ncrna:miRNA chromosome:GRCh37:14:31779519:31779590:1 gene:ENSG00000263784 gene_biotype:miRNA transcript_biotype:miRNA	chr14	 31779519	 31779590	+	ENSG00000263784	ENST00000582500	NA	NA	HEATR5A	NA	chr14:31769519-31789590	inner
LNCA_21_P0004223	3.0672722	P	2.6481805	A	1.33708547999194	0	lncRNA	TCONS_00009864	NA	NA	NA	NA	XLOC_004280	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004280), lincRNA [TCONS_00009864]"	chr5:7391934-7391993	hs|5p15.31	Agilent_HUMAN_G3V2	TCONS_00009864	TCONS_00009864	chr5	  7391934	  7391993	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37193_PI429285431	6.0655856	P	6.5559764	P	0.711832249195044	0	lncRNA	38304-2_{3001..4766}	n345623|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1172|NULL|-1.3169300|-0.2343698	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345623|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1172|NULL|-1.3169300|-0.2343698	chr4	  2564695	  2566460	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60"	NA	inter
CUST_50834_PI429285431	7.1360226	P	7.344477	P	0.8654639308059	0	lncRNA	54479-2_{3001..5447}	hg19_lincRNAsTranscripts_TCONS_l2_00004569 range=chr11:65266464-65272757 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004569 range=chr11:65266464-65272757 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65269464	 65271910	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35056_PI429285431	0.91274554	A	0.90742433	A	1.00369519215909	0	lncRNA	36466-1_{1..687}	n342003|BC038193|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4484|NULL|-0.8536430|-0.3083357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342003|BC038193|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4484|NULL|-0.8536430|-0.3083357	chr12	104235228	104235914	+	NA	NA	NA	NA	NT5DC3	NA	chr12:104225228-104234975	inter
CUST_39359_PI429285431	1.4385612	A	0.92025226	A	1.43227541709654	0	lncRNA	40323-1_{1..1986}	n386454|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lhv.1||0.4234600|-0.2659574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386454|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lhv.1||0.4234600|-0.2659574	chr7	100893615	100895600	-	NA	NA	NA	NA	FIS1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90chr7:100883615-100888371"	NA	inter
CUST_21684_PI429285431	0.8991603	A	0.8966776	M	1.00172235806289	0	lncRNA	23294-1_{1..506}	lnc-SENP6-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SENP6-2:3	chr6	 76095856	 76096361	+	lnc-SENP6-2	lnc-SENP6-2:3	ENSG00000237174.1	RP11-415D17.3	FILIP1	NA	chr6:76085856-76106096	inner
LNCA_21_P0000996	1.6330494	A	3.7397928	P	0.232170503614049	0	lncRNA	XR_110477	XR_110477	XR_110477	NA	NA	LOC100505940	uncharacterized LOC100505940	ENST00000418242	THC2658879	NA	"PREDICTED: Homo sapiens hypothetical LOC100505940 (LOC100505940), miscRNA [XR_110477]"	chr1:94800335-94800394	hs|1p21.3	Agilent_HUMAN_G3V2	XR_110477	XR_110477	chr1	 94800335	 94800394	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7409_PI429285431	0.9134065	A	1.2430146	A	0.795752616124107	0	lncRNA	9052-1_{1..1497}	lnc-C5orf52-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C5orf52-1:1	chr5	157078306	157079802	+	lnc-C5orf52-1	lnc-C5orf52-1:1	ENSG00000246844	ENST00000499015	SOX30	"hg19_refFlat_SOX30:range=chr5:157053611-1570790865'pad=0,hg19_refFlat_SOX30:range=chr5:157053611-1570790865'pad=0 3'pad=0 strand=- repeatMasking=none,-105.30;hg19_refFlat_SOX30:range=chr5:157053348-1570790865'pad=0,hg19_refFlat_SOX30:range=chr5:157053348-1570790865'pad=0 3'pad=0 strand=- repeatMasking=none,-105.30chr5:157068306-157079428"	NA	inner
CUST_32226_PI429285431	0.9218961	A	0.9259587	A	0.997187981416146	0	lncRNA	33918-1_{1..2086}	n338799|BC039354|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1222|NULL|-0.9651740|-0.3857425	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338799|BC039354|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1222|NULL|-0.9651740|-0.3857425	chr2	 42545076	 42547161	+	NA	NA	NA	NA	EML4	NA	chr2:42535076-42557481	inner
LNCA_21_P0011785	0.93081254	A	0.9225539	A	1.00574086902175	0	lncRNA	TCONS_l2_00013421	NA	NA	NA	NA	XLOC_l2_007167	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007167), lincRNA [TCONS_l2_00013421]"	chr2:742229-747686	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_l2_00013421	TCONS_l2_00013421	chr2	   742229	   747686	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45415_PI429285431	3.5319595	P	1.0145504	A	5.72552941832262	0	lncRNA	49840-2_{3001..3806}	"gi|212276166|ref|NR_024408.1| Homo sapiens uncharacterized LOC253039 (LOC253039), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|212276166|ref|NR_024408.1| Homo sapiens uncharacterized LOC253039 (LOC253039), non-coding RNA"	Chr9	123608320	123609125	+	253039	NR_024408.1	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.62;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60"	NA	inter
CUST_47514_PI429285431	10.657179	P	10.814389	P	0.896757617308356	0	lncRNA	51525-1_{1..2346}	"gi|209180452|ref|NR_024195.1| Homo sapiens target of myb1 (chicken) (TOM1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|209180452|ref|NR_024195.1| Homo sapiens target of myb1 (chicken) (TOM1), transcript variant 6, non-coding RNA"	Chr22	 35695797	 35698142	+	10043	NR_024195.1	NA	NA	NA	NA	NA	inter
CUST_236_PI429285431	9.871454	P	9.940175	P	0.95348291967498	0	lncRNA	227-2_{3001..4063}	"transcript_id ""ENST00000422374.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422374.1"" | genecode_v17"	chr1	 56049710	 56050772	+	ENSG00000234810.1	ENST00000422374.1	RP11-466L17.1	RP11-466L17.1-001	NA	NA	NA	inter
CUST_1072_PI429285431	2.133033	A	1.6570904	A	1.39082663427919	0	lncRNA	1061-1_{1..1861}	"transcript_id ""ENST00000437751.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437751.1"" | genecode_v17"	chr2	132160474	132162334	+	ENSG00000223631.1	ENST00000437751.1	AC073869.19	AC073869.19-001	NA	NA	NA	inter
CUST_51099_PI429285431	2.2381358	A	3.01968	A	0.581743785830161	0	lncRNA	54736-1_{1..549}	hg19_lincRNAsTranscripts_TCONS_l2_00007240 range=chr13:64411329-64418307 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007240 range=chr13:64411329-64418307 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 64411329	 64411877	-	NA	NA	NA	NA	LOC100507505	NA	chr13:64401329-64407126	inter
CUST_44133_PI429285431	0.9278593	A	0.9179761	A	1.00687403064748	0	lncRNA	48796-1_{1..561}	"gi|310119178|ref|XR_110046.1| PREDICTED: Homo sapiens uncharacterized LOC100505947 (LOC100505947), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|310119178|ref|XR_110046.1| PREDICTED: Homo sapiens uncharacterized LOC100505947 (LOC100505947), misc_RNA"	NA	NA	NA	NA	NA	XR_110046.1	NA	NA	NA	NA	NA	Unknown
CUST_21831_PI429285431	0.90768397	A	1.1093794	A	0.869528108390828	0	lncRNA	23441-1_{1..447}	lnc-TGFBRAP1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TGFBRAP1-3:3	chr2	105715060	105715506	-	lnc-TGFBRAP1-3	lnc-TGFBRAP1-3:3	ENSG00000231851.1	AC104655.2	MRPS9	"hg19_refFlat_MRPS9:range=chr2:105654551-1057162195'pad=0,hg19_refFlat_MRPS9:range=chr2:105654551-1057162195'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.80chr2:105705060-105716418"	NA	inner
CUST_50148_PI429285431	8.043948	P	8.239878	P	0.873009948813075	0	lncRNA	53873-1_{1..2430}	hg19_lincRNAsTranscripts_TCONS_l2_00029170 range=chr9:2422221-2425536 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029170 range=chr9:2422221-2425536 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	  2422221	  2424650	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
LNCA_21_P0005533	1.599149	A	2.0675817	A	0.722749344320485	0	lncRNA	TCONS_00013979	NA	NA	NA	NA	XLOC_006618	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006618), lincRNA [TCONS_00013979]"	chr7:136428610-136428551	hs|7q33	Agilent_HUMAN_G3V2	TCONS_00013979	TCONS_00013979	chr7	136428551	136428610	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20564_PI429285431	1.9584091	A	2.3254385	A	0.775377405136533	0	lncRNA	22205-1_{1..127}	lnc-TRPM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRPM2-1:1	chr21	 45760322	 45760448	+	lnc-TRPM2-1	lnc-TRPM2-1:1	ENSG00000232969.1	AP001062.9	C21orf2	NA	chr21:45750322-45759285	inter
CUST_28440_PI429285431	1.1815348	A	1.0799987	A	1.07291523397867	0	lncRNA	30099-1_{1..903}	n325764|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044431|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044431|-0.7397500|-0.2984814	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325764|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044431|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044431|-0.7397500|-0.2984814	chr13	 32349568	 32350470	-	NA	NA	NA	NA	RXFP2	NA	chr13:32339568-32377009	inner
CUST_44145_PI429285431	3.120316	A	1.3300264	A	3.45884316789768	0	lncRNA	48808-1_{1..3000}	"gi|290543310|ref|NR_026746.2| Homo sapiens zinc finger protein 619 (ZNF619), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|290543310|ref|NR_026746.2| Homo sapiens zinc finger protein 619 (ZNF619), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NR_026746.2	NA	NA	NA	NA	NA	Unknown
CUST_35697_PI429285431	5.8579764	P	4.6979346	P	2.23463902063669	0	lncRNA	37117-1_{1..899}	n342861|BC046344|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5365|NULL|-1.2488200|-0.3146795	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342861|BC046344|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5365|NULL|-1.2488200|-0.3146795	chr9	 37881889	 37882787	-	NA	NA	NA	NA	MCART1	NA	chr9:37877572-37892757	inter
CUST_47477_PI429285431	0.92305326	A	1.3364275	A	0.75086516122897	0	lncRNA	51499-1_{1..3000}	"gi|364023798|ref|NR_045648.1| Homo sapiens piwi-like 3 (Drosophila) (PIWIL3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|364023798|ref|NR_045648.1| Homo sapiens piwi-like 3 (Drosophila) (PIWIL3), transcript variant 3, non-coding RNA"	Chr22	 25115001	 25118000	-	440822	NR_045648.1	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80"	NA	inter
CUST_35321_PI429285431	5.730987	P	5.2340865	P	1.41117851368881	0	lncRNA	36729-1_{1..1730}	n342354|CR624679|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4846|NULL|-1.2916300|-0.4118311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342354|CR624679|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4846|NULL|-1.2916300|-0.4118311	chr19	 23922002	 23923731	-	NA	NA	NA	NA	ZNF681	NA	chr19:23921997-23933732	inner
CUST_578_PI429285431	2.0555725	A	2.1279316	A	0.951081513973224	0	lncRNA	570-1_{1..423}	"transcript_id ""ENST00000431729.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431729.1"" | genecode_v17"	chr1	222001008	222001430	-	ENSG00000227925.1	ENST00000431729.1	RP11-191N8.2	RP11-191N8.2-001	NA	NA	NA	inter
CUST_12332_PI429285431	0.96987075	A	0.980468	A	0.992681457954023	0	lncRNA	13944-1_{1..848}	lnc-C2orf76-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2orf76-1:1	chr2	120039947	120040794	-	lnc-C2orf76-1	lnc-C2orf76-1:1	XLOC_002293	linc-C1QL2	NA	NA	NA	inter
CUST_7859_PI429285431	1.7097348	A	2.3999674	A	0.619753921447236	0	lncRNA	9481-1_{1..1670}	lnc-AP000350.10.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP000350.10.1-1:1	chr22	 24203152	 24204821	+	lnc-AP000350.10.1-1	lnc-AP000350.10.1-1:1	ENSG00000247349	ENST00000511223	SLC2A11	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr22:24199059-24213477"	NA	inner
CUST_37387_PI429285431	2.6064892	A	2.7282956	A	0.919036203700115	0	lncRNA	38491-1_{1..895}	n345839|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1388|NULL|-1.5079100|-0.1434898	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n345839|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1388|NULL|-1.5079100|-0.1434898	chr2	242823543	242824437	+	NA	NA	NA	NA	C2orf85	NA	chr2:242813543-242815482	inter
CUST_45028_PI429285431	2.94095	A	2.068159	A	1.83120207147636	0	lncRNA	49527-2_{3001..4361}	"gi|239787135|ref|NR_027768.1| Homo sapiens dpy-19-like 2 pseudogene 2 (C. elegans) (DPY19L2P2), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239787135|ref|NR_027768.1| Homo sapiens dpy-19-like 2 pseudogene 2 (C. elegans) (DPY19L2P2), transcript variant 1, non-coding RNA"	Chr7	102818460	102819820	-	349152	NR_027768.1	NA	NA	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80"	NA	inter
CUST_27860_PI429285431	1.4146738	A	1.1154172	A	1.23051018575814	0	lncRNA	29453-1_{1..348}	n325096|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326162|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326162|-1.2683900|-0.0851546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325096|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326162|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326162|-1.2683900|-0.0851546	chr2	240212328	240212675	+	NA	NA	NA	NA	HDAC4	NA	chr2:240202328-240227470	inner
CUST_25253_PI429285431	0.9215736	A	1.2679244	A	0.786571162576784	0	lncRNA	26783-1_{1..499}	lnc-ANKRD30B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD30B-1:1	chr18	 14883832	 14884330	+	lnc-ANKRD30B-1	lnc-ANKRD30B-1:1	ENSG00000265786.1	RP11-527H14.6	NA	NA	NA	inter
CUST_2308_PI429285431	5.5256605	P	5.664413	P	0.908304227513549	0	lncRNA	2300-1_{1..1367}	"transcript_id ""ENST00000427306.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427306.2"" | genecode_v17"	chr5	111496226	111497592	+	ENSG00000224032.2	ENST00000427306.2	EPB41L4A-AS1	EPB41L4A-AS1-002	EPB41L4A	NA	chr5:111498315-111507999	inter
CUST_38426_PI429285431	2.5355225	A	1.3938806	A	2.20631976823189	0	lncRNA	39453-1_{1..1803}	n382511|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zqn.2||-1.2802800|-0.4206589	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382511|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zqn.2||-1.2802800|-0.4206589	chr15	 43033743	 43035545	-	NA	NA	NA	NA	TTBK2	NA	chr15:43036536-43045546	inter
LNCA_19_P00807752	2.0941799	A	0.99680316	A	2.13965284378324	0	lncRNA	ENST00000442625	XR_111408	XR_111408	NA	Hs.729031	MCF2L	MCF.2 cell line derived transforming sequence-like	ENST00000442625	THC2656684	GO:0005085|GO:0051056|GO:0008624|GO:0048011|GO:0005737|GO:0005886|GO:0035023|GO:0007264|GO:0006915|GO:0005089|GO:0005829	"PREDICTED: Homo sapiens hypothetical LOC100506063 (LOC100506063), miscRNA [XR_111408]"	chr13:113556601-113556660	hs|13q34	Agilent_HUMAN_G3V2	ENST00000442625	ENST00000442625	chr13	113556601	113556660	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28391_PI429285431	2.4333754	A	3.076851	A	0.64016885729845	0	lncRNA	30045-1_{1..406}	n325708|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045196|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045196|-0.5217420|-0.5447556	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325708|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045196|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045196|-0.5217420|-0.5447556	chr13	 63139814	 63140219	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00"	NA	inter
CUST_38934_PI429285431	8.281923	P	7.940282	P	1.26719715366374	0	lncRNA	39923-1_{1..3000}	n385070|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003slj.1||7.0000400|-0.0957343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385070|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003slj.1||7.0000400|-0.0957343	chr7	  1884935	  1887934	+	NA	NA	NA	NA	MAD1L1	NA	chr7:1874935-1899567	inner
CUST_41755_PI429285431	6.4474897	P	6.875573	P	0.74324857642798	0	lncRNA	43303-1_{1..73}	ENST00000585009 ncrna:miRNA chromosome:GRCh37:19:10341089:10341161:1 gene:ENSG00000264266 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585009 ncrna:miRNA chromosome:GRCh37:19:10341089:10341161:1 gene:ENSG00000264266 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 10341089	 10341161	+	ENSG00000264266	ENST00000585009	NA	NA	S1PR2	NA	chr19:10332109-10341948	inner
CUST_3726_PI429285431	4.192798	P	4.226281	P	0.977058602112591	0	lncRNA	3695-1_{1..1963}	"transcript_id ""ENST00000603033.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000603033.1"" | genecode_v17"	chr10	 72689682	 72691644	+	ENSG00000271409.1	ENST00000603033.1	RP11-432J9.3	RP11-432J9.3-001	NA	NA	NA	inter
CUST_44904_PI429285431	5.262438	P	3.6994133	P	2.95472671382621	0	lncRNA	49423-1_{1..3000}	"gi|381342474|ref|NR_046479.1| Homo sapiens FK506 binding protein 14, 22 kDa (FKBP14), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|381342474|ref|NR_046479.1| Homo sapiens FK506 binding protein 14, 22 kDa (FKBP14), transcript variant 3, non-coding RNA"	Chr7	 30050199	 30053198	-	55033	NR_046479.1	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0,hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.81;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30"	NA	inter
CUST_37712_PI429285431	1.5765839	A	2.1455245	A	0.67411162045616	0	lncRNA	38806-1_{1..547}	n346208|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1758|NULL|-1.2975200|-0.1079422	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346208|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1758|NULL|-1.2975200|-0.1079422	chr17	 62811102	 62811648	+	NA	NA	NA	NA	NA	"hg19_refFlat_PLEKHM1:range=chr17:43515224-435598505'pad=0,hg19_refFlat_PLEKHM1:range=chr17:43515224-435598505'pad=0 3'pad=0 strand=- repeatMasking=none,-102.10;hg19_refFlat_PLEKHM1:range=chr17_ctg5_hap1:130286-1749185'pad=0,hg19_refFlat_PLEKHM1:range=chr17_ctg5_hap1:130286-1749185'pad=0 3'pad=0 strand=- repeatMasking=none,-102.10"	NA	inter
CUST_35494_PI429285431	1.0021604	A	0.9260968	A	1.0541378930507	0	lncRNA	36903-1_{1..1614}	n342594|BC043276|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5095|NULL|1.0854800|-0.3071618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n342594|BC043276|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5095|NULL|1.0854800|-0.3071618	chr10	 45594923	 45596536	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12368_PI429285431	0.9196748	A	1.0519413	A	0.912396931617072	0	lncRNA	13980-1_{1..256}	lnc-TTC17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC17-1:1	chr11	 43694541	 43694796	+	lnc-TTC17-1	lnc-TTC17-1:1	XLOC_009116	linc-HSD17B12-1	HSD17B12	NA	chr11:43702143-43704586	inter
CUST_25037_PI429285431	5.0408974	P	5.0922093	P	0.965058363834834	0	lncRNA	26576-1_{1..927}	lnc-SHISA9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHISA9-1:1	chr16	 12854227	 12855153	+	lnc-SHISA9-1	lnc-SHISA9-1:1	ENSG00000261158.1	CTD-2583P5.3	CPPED1	NA	chr16:12844227-12865019	inner
CUST_18537_PI429285431	1.1111182	A	0.9152094	A	1.14544548632842	0	lncRNA	20249-1_{1..264}	lnc-RP11-88J22.1.1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-88J22.1.1-3:4	chr8	 94262882	 94263145	-	lnc-RP11-88J22.1.1-3	lnc-RP11-88J22.1.1-3:4	ENSG00000246662	RP11-163D8.1	NA	NA	NA	inter
CUST_37553_PI429285431	3.289889	A	3.5854626	P	0.81474833284112	0	lncRNA	38657-1_{1..732}	n346029|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1579|NULL|-1.2939900|-0.3295144	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346029|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1579|NULL|-1.2939900|-0.3295144	chr1	114557544	114558275	-	NA	NA	NA	NA	SYT6	"hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10chr1:114547544-114584814"	NA	inter
CUST_30048_PI429285431	5.3551135	P	5.948626	P	0.662727412414105	0	lncRNA	31817-1_{1..222}	n334552|U52699|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220266_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220266_06|-1.3241500|-0.1038071	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334552|U52699|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220266_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220266_06|-1.3241500|-0.1038071	chr6	  3445788	  3446009	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3435788-3456793	inner
CUST_33674_PI429285431	0.90657926	A	0.91128457	A	0.996743840463372	0	lncRNA	35235-2_{3001..3268}	n340439|BC040568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2900|NULL|-0.5722260|-0.4142859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340439|BC040568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2900|NULL|-0.5722260|-0.4142859	chr5	 42191374	 42191641	+	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.61;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00"	NA	inter
CUST_35448_PI429285431	2.8976607	A	3.2092524	P	0.805752296347028	0	lncRNA	36855-1_{1..3000}	n342524|BX648100|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5019|NULL|0.7153140|-0.1942101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342524|BX648100|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5019|NULL|0.7153140|-0.1942101	chr21	 15215453	 15218452	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20266_PI429285431	2.8403945	A	3.034869	A	0.873891151792292	0	lncRNA	21909-1_{1..573}	lnc-GTPBP8-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTPBP8-1:3	chr3	112807470	112808042	+	lnc-GTPBP8-1	lnc-GTPBP8-1:3	ENSG00000240057.1	RP11-572M11.4	NA	"hg19_refFlat_C3orf17:range=chr3:112724383-1127384945'pad=0,hg19_refFlat_C3orf17:range=chr3:112724383-1127384945'pad=0 3'pad=0 strand=- repeatMasking=none,-100.30"	NA	inter
CUST_43273_PI429285431	1.7809433	A	1.6003416	A	1.13335647193557	0	lncRNA	48091-1_{1..1927}	ENST00000587007 havana:sense_intronic chromosome:GRCh37:19:31827904:31829830:-1 gene:ENSG00000267753 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000587007 havana:sense_intronic chromosome:GRCh37:19:31827904:31829830:-1 gene:ENSG00000267753 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 31827904	 31829830	-	ENSG00000267753	ENST00000587007	NA	NA	TSHZ3	NA	chr19:31817904-31839830	inner
CUST_2217_PI429285431	7.602233	P	7.6734085	P	0.951862109969998	0	lncRNA	2209-1_{1..526}	"transcript_id ""ENST00000504382.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504382.1"" | genecode_v17"	chr5	 82236277	 82236802	-	ENSG00000249857.1	ENST00000504382.1	CTD-2227C6.3	CTD-2227C6.3-001	NA	NA	NA	inter
CUST_11943_PI429285431	1.0328479	A	2.139301	A	0.464434451617643	0	lncRNA	13523-1_{1..310}	lnc-WDR11-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR11-2:2	chr10	122714013	122714322	+	lnc-WDR11-2	lnc-WDR11-2:2	XLOC_008645	linc-TACC2-5	NA	NA	NA	inter
CUST_3664_PI429285431	5.9638314	P	5.212843	P	1.68294543278133	0	lncRNA	3633-1_{1..519}	"transcript_id ""ENST00000411439.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411439.1"" | genecode_v17"	chr10	 43169645	 43170163	-	ENSG00000233515.1	ENST00000411439.1	AL022344.4	AL022344.4-001	NA	NA	NA	inter
CUST_20423_PI429285431	3.2728572	P	3.5615149	P	0.818663398131212	0	lncRNA	22066-1_{1..554}	lnc-AC005003.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC005003.1-1:1	chr22	 31733654	 31734207	+	lnc-AC005003.1-1	lnc-AC005003.1-1:1	ENSG00000228839.1	RP3-400N23.6	PATZ1	NA	chr22:31723654-31742249	inner
CUST_32228_PI429285431	0.9290326	A	0.9178356	A	1.00779136492075	0	lncRNA	33920-1_{1..1336}	n338801|CR592946|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1224|NULL|-0.4030890|-0.3673712	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338801|CR592946|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1224|NULL|-0.4030890|-0.3673712	chr2	 42583030	 42584365	-	NA	NA	NA	NA	COX7A2L	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-62.00chr2:42577642-42588356"	NA	inner
CUST_40763_PI429285431	5.517705	P	5.012911	P	1.41892073642783	0	lncRNA	41486-2_{3001..4899}	n410480|NR_037625_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_5||-0.2476560|-0.3139196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410480|NR_037625_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_5||-0.2476560|-0.3139196	chr6	  4386202	  4388100	+	NA	NA	NA	NA	NA	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-59.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10"	NA	inter
CUST_40835_PI429285431	4.105035	P	3.602293	P	1.41690398611515	0	lncRNA	41538-1_{1..1841}	n410606|NR_037857|lncRNA|Homosapiens||RefGeneNoncode|NR_037857||-0.4180610|-0.2495226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410606|NR_037857|lncRNA|Homosapiens||RefGeneNoncode|NR_037857||-0.4180610|-0.2495226	chr2	122407229	122409069	+	NA	NA	NA	NA	CLASP1	"hg19_refFlat_MKI67IP:range=chr2:122485300-1224944265'pad=0,hg19_refFlat_MKI67IP:range=chr2:122485300-1224944265'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30chr2:122397229-122407052"	NA	inter
CUST_8504_PI429285431	4.7867403	P	4.5874863	P	1.14810453063848	0	lncRNA	10067-1_{1..571}	lnc-DAD1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DAD1-2:5	chr14	 22901658	 22902228	-	lnc-DAD1-2	lnc-DAD1-2:5	ENSG00000251002	AE000661.37	NA	NA	NA	inter
CUST_9924_PI429285431	0.9043244	A	0.902253	A	1.00143681630268	0	lncRNA	11449-1_{1..1152}	lnc-FAM174B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM174B-1:1	chr15	 93138915	 93140066	-	lnc-FAM174B-1	lnc-FAM174B-1:1	XLOC_011585	linc-VPS33B-2	NA	NA	NA	inter
CUST_18742_PI429285431	1.1088107	A	1.1074333	A	1.0009551968367	0	lncRNA	20439-1_{1..3000}	lnc-HSCB-1:20	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HSCB-1:20	chr22	 28395418	 28398417	+	lnc-HSCB-1	lnc-HSCB-1:20	ENSG00000235954	TTC28-AS1	TTC28	"hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0,hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0 3'pad=0 strand=- repeatMasking=none,-101.50chr22:28385418-28406711"	NA	inner
LNCA_21_P0009136	0.9850252	A	0.9269517	A	1.04107463525226	0	lncRNA	TCONS_00025076	NA	NA	NA	NA	XLOC_012031	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012031), lincRNA [TCONS_00025076]"	chr16:84981969-84981910	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00025076	TCONS_00025076	chr16	 84981910	 84981969	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006003	0.9857004	A	0.92656595	A	1.04184051739262	0	lncRNA	ENST00000421855	NA	NA	NA	NA	XLOC_007322	NA	ENST00000421855	NA	NA	"BROAD Institute lincRNA (XLOC_007322), lincRNA [TCONS_00015659]"	chr9:33501087-33501146	hs|9p13.3	Agilent_HUMAN_G3V2	ENST00000421855	ENST00000421855	chr9	 33501087	 33501146	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36930_PI429285431	0.9462706	A	2.5415354	A	0.330961475576024	0	lncRNA	38085-1_{1..3000}	n345399|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_948|NULL|-1.2874800|-0.2744191	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n345399|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_948|NULL|-1.2874800|-0.2744191	chr21	 35553022	 35556021	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30"	NA	inter
CUST_47331_PI429285431	0.9137353	A	1.4150063	A	0.706484101463973	0	lncRNA	51387-1_{1..706}	"gi|374349235|ref|NR_046224.1| Homo sapiens long intergenic non-protein coding RNA 659 (LINC00659), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374349235|ref|NR_046224.1| Homo sapiens long intergenic non-protein coding RNA 659 (LINC00659), transcript variant 1, non-coding RNA"	Chr20	 61405473	 61406178	-	100652730	NR_046224.1	NA	NA	NA	NA	NA	inter
CUST_16083_PI429285431	1.3324963	A	1.1834384	A	1.10884514423815	0	lncRNA	17786-1_{1..285}	lnc-OLFM3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OLFM3-1:4	chr1	102830569	102830853	-	lnc-OLFM3-1	lnc-OLFM3-1:4	XLOC_000943	linc-OLFM3-2	NA	NA	NA	inter
CUST_47737_PI429285431	3.6992497	P	2.9675581	A	1.66058503263727	0	lncRNA	51688-1_{1..3000}	"gi|385137082|ref|NR_047620.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 50, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137082|ref|NR_047620.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 50, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047620.1	NA	NA	NA	NA	NA	inter
CUST_24416_PI429285431	5.820976	P	5.480137	P	1.2664929094123	0	lncRNA	25969-1_{1..1112}	lnc-SESN3-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SESN3-2:3	chr11	 94706662	 94707773	-	lnc-SESN3-2	lnc-SESN3-2:3	ENSG00000150316.7	CWC15	KDM4D	NA	chr11:94706845-94716750	inner
CUST_21445_PI429285431	5.124726	P	5.552743	P	0.743282733690274	0	lncRNA	23064-1_{1..265}	lnc-FOXO6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXO6-3:1	chr1	 42001458	 42001722	+	lnc-FOXO6-3	lnc-FOXO6-3:1	ENSG00000230881.1	RP11-486B10.3	HIVEP3	NA	chr1:41991458-42011539	inner
CUST_48272_PI429285431	3.2024715	A	3.4997437	P	0.813789629101174	0	lncRNA	52133-1_{1..345}	hg19_lincRNAsTranscripts_TCONS_l2_00000068 range=chr1:4000553-4001192 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000068 range=chr1:4000553-4001192 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	  4000553	  4000897	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009710	0.98160875	A	0.9230844	A	1.04140002754497	0	lncRNA	TCONS_00026993	NA	NA	NA	NA	XLOC_013041	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013041), lincRNA [TCONS_00026993]"	chr19:32697348-32697407	hs|19q13.11	Agilent_HUMAN_G3V2	TCONS_00026993	TCONS_00026993	chr19	 32697348	 32697407	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1351_PI429285431	1.7176386	A	1.9009575	A	0.880674684195292	0	lncRNA	1339-1_{1..474}	"transcript_id ""ENST00000496829.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000496829.1"" | genecode_v17"	chr3	 55212200	 55212673	+	ENSG00000243572.1	ENST00000496829.1	RP11-889D3.2	RP11-889D3.2-001	NA	NA	NA	inter
CUST_39145_PI429285431	1.0997658	A	0.95015085	A	1.10927337157271	0	lncRNA	40121-1_{1..3000}	n385776|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dwz.2||-0.0503229|-0.4181090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385776|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dwz.2||-0.0503229|-0.4181090	chrX	 67753021	 67756020	+	NA	NA	NA	NA	YIPF6	NA	chrX:67743021-67757127	inner
CUST_3153_PI429285431	0.92348474	A	0.92780447	A	0.997010269501858	0	lncRNA	3132-1_{1..417}	"transcript_id ""ENST00000522086.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522086.1"" | genecode_v17"	chr8	 64378783	 64379199	-	ENSG00000253205.1	ENST00000522086.1	CTD-3046C4.1	CTD-3046C4.1-004	NA	NA	NA	inter
LNCA_21_P0006500	5.079964	P	5.775574	P	0.617448194053393	0	lncRNA	TCONS_00017182	NA	NA	NA	NA	XLOC_007996	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007996), lincRNA [TCONS_00017182]"	chrX:57153488-57154232	hs|Xp11.21	Agilent_HUMAN_G3V2	TCONS_00017182	TCONS_00017182	chrX	 57153488	 57154232	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_684_PI429285431	3.1842556	A	3.661477	P	0.718359838310638	0	lncRNA	677-1_{1..856}	"transcript_id ""ENST00000592565.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592565.1"" | genecode_v17"	chr2	  6757946	  6758801	-	ENSG00000236172.2	ENST00000592565.1	AC097517.2	AC097517.2-044	NA	NA	NA	inter
CUST_633_PI429285431	1.704696	A	0.9932476	A	1.63744721447713	0	lncRNA	625-1_{1..826}	"transcript_id ""ENST00000589124.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589124.1"" | genecode_v17"	chr2	   309001	   309826	-	ENSG00000235779.2	ENST00000589124.1	AC079779.5	AC079779.5-021	NA	NA	NA	inter
CUST_8555_PI429285431	4.9932876	P	4.8173532	P	1.12969584561809	0	lncRNA	10114-1_{1..358}	lnc-RASA1-7:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASA1-7:8	chr5	 88201026	 88201383	+	lnc-RASA1-7	lnc-RASA1-7:8	ENSG00000248309	CTC-454M9.1	MEF2C	NA	chr5:88191026-88199922	inter
CUST_18070_PI429285431	2.1771398	A	1.9530876	A	1.16800965510426	0	lncRNA	19805-1_{1..248}	lnc-RAB28-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB28-4:1	chr4	 12610966	 12611213	-	lnc-RAB28-4	lnc-RAB28-4:1	XLOC_003883	linc-HS3ST1-1	NA	NA	NA	inter
CUST_11386_PI429285431	1.4229242	A	1.0611438	A	1.2850107245194	0	lncRNA	12951-1_{1..3000}	lnc-SLITRK5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK5-1:1	chr13	 88340492	 88343491	+	lnc-SLITRK5-1	lnc-SLITRK5-1:1	XLOC_010463	linc-GPC5-8	SLITRK5	NA	chr13:88330492-88331871	inter
CUST_9618_PI429285431	3.6242397	P	4.4111695	P	0.579576176823931	0	lncRNA	11134-1_{1..700}	lnc-NAV3-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAV3-1:10	chr12	 78177043	 78177742	+	lnc-NAV3-1	lnc-NAV3-1:10	XLOC_009813	linc-NAV3-1	NA	NA	NA	inter
CUST_49786_PI429285431	6.0544314	P	6.4055185	P	0.783993120536621	0	lncRNA	53543-2_{3001..4128}	hg19_lincRNAsTranscripts_TCONS_l2_00026601 range=chr7:57687757-57706334 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026601 range=chr7:57687757-57706334 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 57690757	 57691884	-	NA	NA	NA	NA	LOC100287633	"hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.21;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00chr7:57710228-57712559"	NA	inter
CUST_26178_PI429285431	0.9168078	A	0.9187775	A	0.998635639585565	0	lncRNA	27689-1_{1..789}	lnc-OAZ3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OAZ3-4:1	chr1	152096876	152097664	+	lnc-OAZ3-4	lnc-OAZ3-4:1	ENSG00000226716.1	AL589986.2	RPTN	"hg19_refFlat_HDHD1:range=chrX:6968337-70661545'pad=0,hg19_refFlat_HDHD1:range=chrX:6968337-70661545'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_HDHD1:range=chrX:6975748-70661545'pad=0,hg19_refFlat_HDHD1:range=chrX:6975748-70661545'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr1:152095636-152107541"	NA	inter
CUST_4135_PI429285431	4.134925	P	4.536731	P	0.756910171771138	0	lncRNA	4094-1_{1..2303}	"transcript_id ""ENST00000505276.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505276.2"" | genecode_v17"	chr12	  3405368	  3407670	-	ENSG00000250770.2	ENST00000505276.2	RP5-1063M23.1	RP5-1063M23.1-001	TSPAN9	NA	chr12:3395368-3395730	inter
CUST_16526_PI429285431	1.2519753	A	1.6317216	A	0.768572733382821	0	lncRNA	18225-1_{1..282}	lnc-FCHSD2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FCHSD2-3:1	chr11	 72929072	 72929353	-	lnc-FCHSD2-3	lnc-FCHSD2-3:1	XLOC_009500	linc-FCHSD2-1	P2RY2	NA	chr11:72929344-72939202	inter
CUST_48510_PI429285431	1.5122004	A	0.9235803	A	1.50380770665507	0	lncRNA	52363-1_{1..2862}	hg19_lincRNAsTranscripts_TCONS_l2_00014790 range=chr2:111964898-112253382 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014790 range=chr2:111964898-112253382 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	111964898	111967759	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_671_PI429285431	0.91894597	A	0.91439915	A	1.00315658702497	0	lncRNA	664-1_{1..507}	"transcript_id ""ENST00000421212.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421212.1"" | genecode_v17"	chr2	  4677790	  4678296	-	ENSG00000231532.1	ENST00000421212.1	AC022311.1	AC022311.1-002	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-28.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-56.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90"	NA	inter
CUST_50686_PI429285431	1.5983874	A	2.314284	A	0.608826643236946	0	lncRNA	54358-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00003048 range=chr10:48320921-48326093 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003048 range=chr10:48320921-48326093 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 48320921	 48323920	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24047_PI429285431	2.1819158	A	2.8631673	A	0.623624062270574	0	lncRNA	25599-1_{1..560}	lnc-GNB1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNB1L-1:1	chr22	 19702220	 19702779	-	lnc-GNB1L-1	lnc-GNB1L-1:1	ENSG00000228287.1	AC000093.3	5-Sep	NA	chr22:19701987-19710845	inner
CUST_28432_PI429285431	0.90964603	A	0.90731955	A	1.00161389398	0	lncRNA	30091-1_{1..435}	n325756|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044598|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044598|-1.3149500|-0.4575088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325756|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044598|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044598|-1.3149500|-0.4575088	chr13	 38048776	 38049210	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1305_PI429285431	4.0633225	P	4.346007	P	0.822059942230612	0	lncRNA	1295-1_{1..2869}	"transcript_id ""ENST00000412578.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000412578.1"" | genecode_v17"	chr3	 10801169	 10804037	-	ENSG00000226567.1	ENST00000412578.1	LINC00606	LINC00606-001	NA	NA	NA	inter
CUST_33355_PI429285431	0.92209697	A	0.91414696	A	1.00552573789808	0	lncRNA	34935-2_{3001..4115}	n340073|BC040544|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2528|NULL|-1.2502000|-0.4379001	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n340073|BC040544|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2528|NULL|-1.2502000|-0.4379001	chr4	 65782998	 65784112	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005738	0.92679894	A	2.1290047	A	0.43461029065142	0	lncRNA	TCONS_00014803	NA	NA	NA	NA	XLOC_006879	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006879), lincRNA [TCONS_00014803]"	chr8:99192077-99192136	hs|8q22.2	Agilent_HUMAN_G3V2	TCONS_00014803	TCONS_00014803	chr8	 99192077	 99192136	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44652_PI429285431	5.4554257	P	3.9089475	P	2.92103207486452	0	lncRNA	49214-2_{3001..4652}	"gi|397739076|ref|NR_073064.1| Homo sapiens exocyst complex component 2 (EXOC2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397739076|ref|NR_073064.1| Homo sapiens exocyst complex component 2 (EXOC2), transcript variant 2, non-coding RNA"	Chr6	   488138	   489789	-	55770	NR_073064.1	NA	NA	NA	NA	NA	inter
CUST_21670_PI429285431	0.93948996	A	0.9222602	A	1.01201435906672	0	lncRNA	23280-1_{1..422}	lnc-FANCL-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FANCL-3:5	chr2	 59476624	 59477045	-	lnc-FANCL-3	lnc-FANCL-3:5	ENSG00000233891.3	AC007131.2	NA	NA	NA	inter
CUST_13242_PI429285431	0.9154033	A	1.115356	A	0.870579105514331	0	lncRNA	14872-1_{1..419}	lnc-TRMT112-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRMT112-3:1	chr11	 64187609	 64188027	-	lnc-TRMT112-3	lnc-TRMT112-3:1	XLOC_009464	linc-TRMT112-3	NA	NA	NA	inter
CUST_1983_PI429285431	0.9049257	A	0.9019256	A	1.00208167453864	0	lncRNA	1974-1_{1..1144}	"transcript_id ""ENST00000511346.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511346.1"" | genecode_v17"	chr4	175056206	175057349	-	ENSG00000250957.1	ENST00000511346.1	RP11-248N22.1	RP11-248N22.1-001	NA	NA	NA	inter
CUST_2859_PI429285431	0.9002853	A	1.1114872	A	0.863817290807236	0	lncRNA	2841-1_{1..520}	"transcript_id ""ENST00000416366.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416366.1"" | genecode_v17"	chr7	 65855118	 65855637	-	ENSG00000179406.6	ENST00000416366.1	LINC00174	LINC00174-004	NA	NA	NA	inter
CUST_7856_PI429285431	1.1518334	A	0.8969275	A	1.19325791006761	0	lncRNA	9479-1_{1..2068}	lnc-RAB15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAB15-1:1	chr14	 65518601	 65520668	-	lnc-RAB15-1	lnc-RAB15-1:1	ENSG00000249059	ENST00000504268	CHURC1-FNTB	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_CHURC1-FNTB:range=chr14:65381133-655280305'pad=0,hg19_refFlat_CHURC1-FNTB:range=chr14:65381133-655280305'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FNTB:range=chr14:65453672-655280305'pad=0,hg19_refFlat_FNTB:range=chr14:65453672-655280305'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30;hg19_refFlat_CHURC1-FNTB:range=chr14:65390839-655280305'pad=0,hg19_refFlat_CHURC1-FNTB:range=chr14:65390839-655280305'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40chr14:65508601-65529373"	NA	inner
CUST_38929_PI429285431	1.8318696	A	0.9164848	A	1.88607206361894	0	lncRNA	39919-1_{1..3000}	n385044|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qtb.2||2.3434700|-0.2386826	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385044|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qtb.2||2.3434700|-0.2386826	chr6	160514113	160517112	+	NA	NA	NA	NA	IGF2R	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-41.72;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr6:160504113-160527244"	NA	inner
CUST_15340_PI429285431	0.9026228	A	1.4249414	A	0.696251965374924	0	lncRNA	17019-1_{1..475}	lnc-ZNF32-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF32-2:1	chr10	 44274126	 44274600	-	lnc-ZNF32-2	lnc-ZNF32-2:1	XLOC_008791	linc-ZNF32-2	NA	NA	NA	inter
CUST_29635_PI429285431	1.1485497	A	1.1619649	A	0.990744391236413	0	lncRNA	31396-1_{1..297}	n333209|AF459737|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000080021|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000080021|2.0468300|-0.2059529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333209|AF459737|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000080021|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000080021|2.0468300|-0.2059529	chr1	160141469	160141765	+	NA	NA	NA	NA	ATP1A4	NA	chr1:160131469-160153984	inner
CUST_678_PI429285431	6.1453853	P	6.422346	P	0.82532789070287	0	lncRNA	671-1_{1..962}	"transcript_id ""ENST00000589150.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589150.1"" | genecode_v17"	chr2	  6757334	  6758295	-	ENSG00000236172.2	ENST00000589150.1	AC097517.2	AC097517.2-043	NA	NA	NA	inter
CUST_30199_PI429285431	13.053746	P	12.996695	P	1.04033704231303	0	lncRNA	31974-1_{1..332}	n334974|AJ459862|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248119_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248119_07|-1.0773700|-0.1039284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334974|AJ459862|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248119_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248119_07|-1.0773700|-0.1039284	chr6	   444486	   444817	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28110_PI429285431	0.9063394	A	0.89782834	A	1.0059168530747	0	lncRNA	29732-1_{1..494}	n325382|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323946|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323946|-1.2810300|-0.2585543	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325382|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323946|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323946|-1.2810300|-0.2585543	chr2	 21394036	 21394529	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_62_PI429201921	0.91961306	A	1.0207585	A	0.932292496056573	0	lncRNA	64-1_{1..1855}	TC04002689.hg.1	TCONS_l2_00021261-XLOC_l2_011236 // Broad TUCP // linc-FABP2-1 chr4:-:120314432-120316288 // chr4 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00021262-XLOC_l2_011236 // Broad TUCP // linc-FABP2-1 chr4:-:120314436-120316288 // chr4 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr4:-:120314432-120316288	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00021261-XLOC_l2_011236	linc-FABP2-1	chr4	120314432	120316288	-	NA	NA	NA	NA	PPP1R1B	NA	chr17:37783177-37788766	Unknown
CUST_24035_PI429285431	0.9171857	A	1.4937359	A	0.670565330452901	0	lncRNA	25587-1_{1..487}	lnc-DHRS7B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHRS7B-1:1	chr17	 21133086	 21133572	+	lnc-DHRS7B-1	lnc-DHRS7B-1:1	ENSG00000235530.2	AC087294.2	C17orf103	NA	chr17:21142183-21143348	inter
CUST_29027_PI429285431	0.9253524	A	1.1171438	A	0.87551791211704	0	lncRNA	30756-1_{1..782}	n326517|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030151|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030151|-1.2463500|-0.4770264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326517|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030151|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030151|-1.2463500|-0.4770264	chr1	 95748303	 95749084	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34333_PI429285431	5.848586	P	5.9473395	P	0.933839487828404	0	lncRNA	35826-1_{1..1641}	n341198|BC043576|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3664|NULL|-0.6891630|-0.1979797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341198|BC043576|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3664|NULL|-0.6891630|-0.1979797	chr7	 19183915	 19185555	+	NA	NA	NA	NA	FERD3L	"hg19_refFlat_FERD3L:range=chr7:19184485-191849855'pad=0,hg19_refFlat_FERD3L:range=chr7:19184485-191849855'pad=0 3'pad=0 strand=- repeatMasking=none,-101.00chr7:19184405-19185044"	NA	inner
CUST_6238_PI429285431	1.8700396	A	2.6228027	A	0.593465841816219	0	lncRNA	6163-1_{1..559}	"transcript_id ""ENST00000582028.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582028.1"" | genecode_v17"	chr18	 63091249	 63091807	+	ENSG00000264232.1	ENST00000582028.1	RP11-453M23.1	RP11-453M23.1-001	NA	NA	NA	inter
CUST_28065_PI429285431	1.9415132	A	1.94879	A	0.994968805666944	0	lncRNA	29683-1_{1..769}	n325331|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325752|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325752|-0.7881420|-0.2529532	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325331|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325752|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325752|-0.7881420|-0.2529532	chr2	 42012262	 42013030	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23837_PI429285431	1.5901928	A	1.8531432	A	0.833381858418459	0	lncRNA	25400-1_{1..697}	lnc-CUBN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CUBN-1:1	chr10	 16790169	 16790865	-	lnc-CUBN-1	lnc-CUBN-1:1	ENSG00000225213.2	RP11-197M22.2	RSU1	NA	chr10:16780169-16800376	inner
LNCA_21_P0003447	0.92410487	A	0.911575	A	1.00872286848142	0	lncRNA	ENST00000503163	NA	NA	NA	NA	XLOC_003886	NA	ENST00000503163	NA	NA	"BROAD Institute lincRNA (XLOC_003886), lincRNA [TCONS_00007718]"	chr4:12950134-12950075	hs|4p15.33	Agilent_HUMAN_G3V2	ENST00000503163	ENST00000503163	chr4	 12950075	 12950134	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14214_PI429285431	3.985546	P	3.7058086	P	1.21397389620906	0	lncRNA	15867-1_{1..1092}	lnc-SREK1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SREK1-1:2	chr5	 65618661	 65619752	+	lnc-SREK1-1	lnc-SREK1-1:2	XLOC_004408	linc-MAST4-2	NA	NA	NA	inter
CUST_45192_PI429285431	8.017946	P	7.8527	P	1.1213572690725	0	lncRNA	49660-1_{1..1996}	"gi|410170562|ref|XR_132555.3| PREDICTED: Homo sapiens uncharacterized LOC100507516 (LOC100507516), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170562|ref|XR_132555.3| PREDICTED: Homo sapiens uncharacterized LOC100507516 (LOC100507516), misc_RNA"	NA	NA	NA	NA	NA	XR_132555.3	NA	NA	NA	NA	NA	Unknown
CUST_5966_PI429285431	2.1829624	A	2.0659473	A	1.08448875960959	0	lncRNA	5895-1_{1..583}	"transcript_id ""ENST00000580370.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580370.1"" | genecode_v17"	chr17	 71827711	 71828293	-	ENSG00000265927.1	ENST00000580370.1	CTD-2532D12.5	CTD-2532D12.5-001	NA	NA	NA	inter
CUST_271_PI429201921	0.914276	A	0.9177859	A	0.997570079758374	0	lncRNA	195-3_{6001..6641}	TC07002872.hg.1	 TCONS_l2_00026501-XLOC_l2_013772 // Broad TUCP // linc-NEUROD6-1 chr7:-:31455009-31456489 // chr7 // 100 // 100 // 0 // --- // 0///TCONS_l2_00027313-XLOC_l2_013772 // Broad TUCP // linc-NEUROD6-1 chr7:-:31454258-31460900 // chr7 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr7:-:31454258-31460900	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00027313-XLOC_l2_013772	linc-NEUROD6-1	chr7	 31454258	 31460900	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4714_PI429285431	8.903431	P	8.935862	P	0.977771324113076	0	lncRNA	4660-2_{3001..4676}	"transcript_id ""ENST00000418499.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418499.3"" | genecode_v17"	chr14	 19653037	 19654712	+	ENSG00000225210.5	ENST00000418499.3	AL589743.1	AL589743.1-003	NA	NA	NA	inter
CUST_34132_PI429285431	0.90444434	A	0.8976176	A	1.00474314887047	0	lncRNA	35653-1_{1..965}	n340972|BC040626|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3438|NULL|-0.9201480|-0.2246941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340972|BC040626|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3438|NULL|-0.9201480|-0.2246941	chr11	 12295967	 12296931	-	NA	NA	NA	NA	MICALCL	NA	chr11:12308447-12313455	inter
CUST_32684_PI429285431	1.2889066	A	0.9293894	A	1.2829964690725	0	lncRNA	34333-1_{1..1511}	n339314|AK098589|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1746|NULL|-1.0584600|-0.1633179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n339314|AK098589|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1746|NULL|-1.0584600|-0.1633179	chr16	 85319913	 85321423	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18222_PI429285431	6.0590196	P	6.2351804	P	0.885055112550156	0	lncRNA	19957-1_{1..1760}	lnc-TOR1AIP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TOR1AIP1-1:1	chr1	179846830	179848589	+	lnc-TOR1AIP1-1	lnc-TOR1AIP1-1:1	ENSG00000245778	AL359853.2	TOR1AIP2	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20chr1:179836830-179846941"	NA	inner
CUST_25960_PI429285431	0.9281859	A	1.0731483	A	0.904402948105629	0	lncRNA	27480-1_{1..376}	lnc-FANCL-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FANCL-3:6	chr2	 59476624	 59476999	-	lnc-FANCL-3	lnc-FANCL-3:6	ENSG00000233891.3	AC007131.2	NA	NA	NA	inter
CUST_39772_PI429285431	0.92570406	A	1.0214772	A	0.93577063373323	0	lncRNA	40688-1_{1..363}	n405973|NR_003254_2|lncRNA|Homosapiens||RefGeneNoncode|NR_003254_2||0.2221320|-0.3062960	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405973|NR_003254_2|lncRNA|Homosapiens||RefGeneNoncode|NR_003254_2||0.2221320|-0.3062960	chrX	  2670336	  2670698	+	NA	NA	NA	NA	XG	NA	chrX:2670093-2703037	inter
CUST_45548_PI429285431	4.8851814	P	3.683901	P	2.29943656761314	0	lncRNA	49948-2_{3001..3159}	"gi|410170598|ref|XR_109026.4| PREDICTED: Homo sapiens supervillin pseudogene (LOC645954), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170598|ref|XR_109026.4| PREDICTED: Homo sapiens supervillin pseudogene (LOC645954), misc_RNA"	NA	NA	NA	NA	NA	XR_109026.4	NA	NA	NA	NA	NA	Unknown
CUST_29595_PI429285431	2.8270497	A	2.321449	A	1.41971436460684	0	lncRNA	31356-1_{1..267}	n333108|AF324837|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077463|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077463|-1.0907100|-0.0644097	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333108|AF324837|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077463|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077463|-1.0907100|-0.0644097	chr11	117186503	117186769	-	NA	NA	NA	NA	BACE1	NA	chr11:117176503-117186972	inner
CUST_22718_PI429285431	5.1489534	P	5.3320255	P	0.88082535297691	0	lncRNA	24302-1_{1..767}	lnc-CYP2J2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYP2J2-1:1	chr1	 60254749	 60255515	-	lnc-CYP2J2-1	lnc-CYP2J2-1:1	ENSG00000226883.1	RP4-782L23.2	NA	NA	NA	inter
CUST_1996_PI429285431	0.91343415	A	0.9125848	A	1.00058889789012	0	lncRNA	1987-1_{1..529}	"transcript_id ""ENST00000506917.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506917.1"" | genecode_v17"	chr4	181652317	181652845	-	ENSG00000249883.1	ENST00000506917.1	RP11-460H9.1	RP11-460H9.1-001	NA	NA	NA	inter
CUST_5941_PI429285431	0.9152393	A	0.9147751	A	1.00032181069117	0	lncRNA	5870-1_{1..468}	"transcript_id ""ENST00000589610.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589610.1"" | genecode_v17"	chr17	 66587980	 66588447	+	ENSG00000267659.1	ENST00000589610.1	RP11-118B18.1	RP11-118B18.1-003	FAM20A	NA	chr17:66577980-66597095	inner
CUST_8067_PI429285431	0.9200631	A	0.9122309	A	1.00544363035129	0	lncRNA	9674-1_{1..655}	lnc-DAD1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DAD1-2:4	chr14	 22901658	 22902312	-	lnc-DAD1-2	lnc-DAD1-2:4	ENSG00000251002	AE000661.37	NA	NA	NA	inter
CUST_9881_PI429285431	0.925757	A	0.91740525	A	1.00580578055994	0	lncRNA	11404-1_{1..1065}	lnc-C17orf67-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C17orf67-1:1	chr17	 54616057	 54617121	-	lnc-C17orf67-1	lnc-C17orf67-1:1	XLOC_012528	linc-TMEM100-2	NA	NA	NA	inter
CUST_9580_PI429285431	1.5573065	A	1.9201194	A	0.777646880685526	0	lncRNA	11096-1_{1..471}	lnc-KDM4C-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KDM4C-3:2	chr9	  7202734	  7203204	+	lnc-KDM4C-3	lnc-KDM4C-3:2	XLOC_007276	linc-TYRP1-7	NA	NA	NA	inter
CUST_43160_PI429285431	0.9206722	A	0.92291117	A	0.998449267886684	0	lncRNA	47975-1_{1..647}	ENST00000601559 havana:sense_intronic chromosome:GRCh37:13:113663092:113663738:1 gene:ENSG00000269356 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000601559 havana:sense_intronic chromosome:GRCh37:13:113663092:113663738:1 gene:ENSG00000269356 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr13	113663092	113663738	+	ENSG00000269356	ENST00000601559	NA	NA	MCF2L	NA	chr13:113653092-113673738	inner
CUST_10224_PI429285431	0.9230806	A	0.99313843	A	0.952599812599525	0	lncRNA	11749-1_{1..355}	lnc-RP11-327F22.5.1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-327F22.5.1-7:1	chr16	 51837387	 51837741	+	lnc-RP11-327F22.5.1-7	lnc-RP11-327F22.5.1-7:1	XLOC_011722	linc-CHD9-6	NA	NA	NA	inter
CUST_2127_PI429285431	2.4340668	A	2.8810186	A	0.733591180731191	0	lncRNA	2118-1_{1..435}	"transcript_id ""ENST00000509629.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509629.1"" | genecode_v17"	chr5	 31747751	 31748185	-	ENSG00000250164.1	ENST00000509629.1	RP11-5N11.6	RP11-5N11.6-001	NA	NA	NA	inter
CUST_8231_PI429285431	4.025941	P	3.788729	P	1.17871260360544	0	lncRNA	9822-1_{1..3000}	lnc-SPAM1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPAM1-4:4	chr7	124782769	124785768	+	lnc-SPAM1-4	lnc-SPAM1-4:4	ENSG00000224897	RP11-3B12.1	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.61"	NA	inter
CUST_4817_PI429285431	4.5120363	P	4.6693153	P	0.896714728968006	0	lncRNA	4761-1_{1..3000}	"transcript_id ""ENST00000553648.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553648.2"" | genecode_v17"	chr14	 51422977	 51425976	-	ENSG00000258711.2	ENST00000553648.2	RP11-218E20.3	RP11-218E20.3-001	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30"	NA	inter
CUST_21313_PI429285431	9.706537	P	9.746939	P	0.972383959568915	0	lncRNA	22936-1_{1..418}	lnc-MAP3K6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP3K6-1:1	chr1	 27634100	 27634517	-	lnc-MAP3K6-1	lnc-MAP3K6-1:1	ENSG00000240397.1	RP11-4K3__A.2	WDTC1	NA	chr1:27624100-27635110	inner
LNCA_21_P0001489	1.2355269	A	0.960154	A	1.2103068823605	0	lncRNA	TCONS_00001450	NA	NA	NA	NA	XLOC_000780	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000780), lincRNA [TCONS_00001450]"	chr1:33606344-33606285	hs|1p35.1	Agilent_HUMAN_G3V2	TCONS_00001450	TCONS_00001450	chr1	 33606285	 33606344	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29796_PI429285431	5.190029	P	5.6255307	P	0.739436569406803	0	lncRNA	31559-1_{1..825}	n333504|BC033971|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000093301|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000093301|-0.4341590|-0.3565465	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333504|BC033971|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000093301|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000093301|-0.4341590|-0.3565465	chr7	 74543561	 74544385	+	NA	NA	NA	NA	GTF2IRD2B	"hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00chr7:74533561-74554386"	NA	inner
CUST_29729_PI429285431	1.8935643	A	2.0259342	A	0.912331541178117	0	lncRNA	31491-1_{1..699}	n333401|BC009083|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087210|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087210|4.0353500|-0.0507127	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333401|BC009083|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087210|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087210|4.0353500|-0.0507127	chr7	 73183871	 73184569	-	NA	NA	NA	NA	CLDN3	NA	chr7:73183327-73184600	inner
CUST_24764_PI429285431	1.4954039	A	1.2335677	A	1.19900377416197	0	lncRNA	26308-1_{1..983}	lnc-PRSS27-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRSS27-2:1	chr16	  2722708	  2723690	-	lnc-PRSS27-2	lnc-PRSS27-2:1	ENSG00000260565.1	ERVK13-1	KCTD5	NA	chr16:2732495-2733445	inter
CUST_37313_PI429285431	0.9126152	A	2.130652	A	0.429867278006119	0	lncRNA	38420-1_{1..641}	n345757|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1306|NULL|-1.7645900|-0.2161208	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345757|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1306|NULL|-1.7645900|-0.2161208	chr6	155647978	155648618	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70"	NA	inter
CUST_30803_PI429285431	0.9133851	A	0.90964854	A	1.0025933429403	0	lncRNA	32590-1_{1..322}	n336707|Z70714|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327965_11|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327965_11|-1.3221800|-0.5131747	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336707|Z70714|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327965_11|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327965_11|-1.3221800|-0.5131747	chr5	 70485543	 70485864	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1683_PI429285431	1.1990874	A	2.005466	A	0.571815407953291	0	lncRNA	1666-2_{3001..4121}	"transcript_id ""ENST00000507424.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507424.1"" | genecode_v17"	chr4	  6207055	  6208175	+	ENSG00000251408.1	ENST00000507424.1	RP11-586D19.2	RP11-586D19.2-001	JAKMIP1	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80chr4:6194055-6202318"	NA	inter
CUST_19188_PI429285431	0.9884117	A	0.9291061	A	1.04196412049419	0	lncRNA	20858-1_{1..531}	lnc-HERPUD2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-HERPUD2-2:1	chr7	 35840096	 35840626	-	lnc-HERPUD2-2	lnc-HERPUD2-2:1	ENSG00000228878.2	AC007551.3	7-Sep	NA	chr7:35840627-35850226	inter
CUST_1164_PI429285431	4.8749886	P	5.0958323	P	0.858063487051216	0	lncRNA	1153-1_{1..481}	"transcript_id ""ENST00000444567.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444567.1"" | genecode_v17"	chr2	176121978	176122458	+	ENSG00000229066.1	ENST00000444567.1	AC096649.3	AC096649.3-001	NA	NA	NA	inter
LNCA_33_P3282364	4.1560574	P	5.152395	P	0.50127090358115	0	lncRNA	XR_132578	XR_132578	XR_132578	100652995	NA	LOC100652995	uncharacterized LOC100652995	ENST00000538062	THC2657157	NA	"PREDICTED: Homo sapiens hypothetical LOC100652995 (LOC100652995), miscRNA [XR_132578]"	chr12:7282164-7282107	hs|12p13.31	Agilent_HUMAN_G3V2	XR_132578	XR_132578	chr12	  7282107	  7282164	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28063_PI429285431	1.0084925	A	0.9306035	A	1.0554725071589	0	lncRNA	29681-1_{1..603}	n325329|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327196|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327196|0.1680520|-0.2955825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325329|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327196|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327196|0.1680520|-0.2955825	chr2	 42446313	 42446915	-	NA	NA	NA	NA	EML4	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20chr2:42436313-42515732"	NA	inner
CUST_51542_PI429285431	0.90959376	A	0.9139126	A	0.997010884558671	0	lncRNA	55109-1_{1..541}	hg19_lincRNAsTranscripts_TCONS_l2_00010543 range=chr17:6799564-6802187 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010543 range=chr17:6799564-6802187 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	  6799564	  6800104	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003690	5.755076	P	5.956645	P	0.869604312476098	0	lncRNA	TCONS_00008359	NA	NA	NA	NA	XLOC_003809	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003809), lincRNA [TCONS_00008359]"	chr4:185768754-185768813	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00008359	TCONS_00008359	chr4	185768754	185768813	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37599_PI429285431	3.8783362	P	4.163684	P	0.820543771070651	0	lncRNA	38697-1_{1..1163}	n346074|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1624|NULL|-1.3468800|-0.2088642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346074|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1624|NULL|-1.3468800|-0.2088642	chr7	 32662936	 32664098	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42210_PI429285431	0.93840593	A	0.921437	A	1.01183140990716	0	lncRNA	44302-1_{1..73}	ENST00000362188 ncrna:miRNA chromosome:GRCh37:4:113569641:113569713:-1 gene:ENSG00000199058 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362188 ncrna:miRNA chromosome:GRCh37:4:113569641:113569713:-1 gene:ENSG00000199058 gene_biotype:miRNA transcript_biotype:miRNA	chr4	113569641	113569713	-	ENSG00000199058	ENST00000362188	NA	NA	LARP7	NA	chr4:113559641-113578742	inner
CUST_26032_PI429285431	4.5738997	P	4.833165	P	0.835513300626426	0	lncRNA	27550-1_{1..443}	lnc-SLA2-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLA2-3:4	chr20	 35201315	 35201757	-	lnc-SLA2-3	lnc-SLA2-3:4	ENSG00000232907.2	RP5-977B1.7	TGIF2	NA	chr20:35201876-35211387	inter
CUST_15471_PI429285431	0.97940314	A	0.9274882	A	1.03663997985853	0	lncRNA	17159-1_{1..1000}	lnc-NLRP3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NLRP3-2:1	chr1	247537959	247538958	+	lnc-NLRP3-2	lnc-NLRP3-2:1	XLOC_000649	linc-NLRP3-1	NA	NA	NA	inter
CUST_16698_PI429285431	5.395122	P	5.6429744	P	0.84214910823329	0	lncRNA	18403-1_{1..562}	lnc-KY-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KY-2:2	chr3	135158598	135159159	-	lnc-KY-2	lnc-KY-2:2	XLOC_003263	linc-KY-1	NA	NA	NA	inter
CUST_47725_PI429285431	0.9221219	A	0.91257066	A	1.00664237846691	0	lncRNA	51682-2_{3001..6000}	"gi|385137071|ref|NR_047609.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 39, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137071|ref|NR_047609.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 39, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047609.1	NA	NA	NA	NA	NA	inter
CUST_22713_PI429285431	2.3264656	A	3.2072651	P	0.543066396117644	0	lncRNA	24297-1_{1..409}	lnc-CCDC117-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC117-1:5	chr22	 29217960	 29218368	+	lnc-CCDC117-1	lnc-CCDC117-1:5	ENSG00000226471.2	CTA-292E10.6	NA	NA	NA	inter
CUST_37184_PI429285431	0.9658879	A	0.9764931	A	0.992675987777982	0	lncRNA	38299-1_{1..3000}	n345618|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1167|NULL|-1.3440200|-0.4104422	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345618|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1167|NULL|-1.3440200|-0.4104422	chr4	160025826	160028825	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20"	NA	inter
CUST_23529_PI429285431	1.0432853	A	0.90852845	A	1.09790775820611	0	lncRNA	25096-1_{1..193}	lnc-PPP4R1-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP4R1-10:1	chr18	  8406759	  8406951	-	lnc-PPP4R1-10	lnc-PPP4R1-10:1	ENSG00000263970.1	RP11-789C17.5	PTPRM	NA	chr18:8396759-8406859	inner
CUST_2054_PI429285431	0.9214804	A	1.0383949	A	0.922157767128562	0	lncRNA	2046-1_{1..444}	"transcript_id ""ENST00000511721.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511721.1"" | genecode_v17"	chr5	  4967877	  4968320	-	ENSG00000251506.1	ENST00000511721.1	CTD-2247C11.2	CTD-2247C11.2-001	NA	NA	NA	inter
LNCA_21_P0010231	1.9256846	A	0.9979124	A	1.90233615210916	0	lncRNA	TCONS_00028993	NA	NA	NA	NA	XLOC_013911	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013911), lincRNA [TCONS_00028993]"	chr21:32997408-32997467	hs|21q22.11	Agilent_HUMAN_G3V2	TCONS_00028993	TCONS_00028993	chr21	 32997408	 32997467	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21100_PI429285431	1.3562338	A	1.112248	A	1.18425995549269	0	lncRNA	22725-1_{1..558}	lnc-SPAG1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPAG1-3:1	chr8	101494986	101495543	+	lnc-SPAG1-3	lnc-SPAG1-3:1	ENSG00000253666.1	KB-1615E4.2	NA	NA	NA	inter
CUST_26158_PI429285431	3.9584913	P	5.1414437	P	0.440449218919749	0	lncRNA	27669-1_{1..418}	lnc-ZNF790-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF790-1:1	chr19	 37342310	 37342727	-	lnc-ZNF790-1	lnc-ZNF790-1:1	ENSG00000254435.1	CTD-2525J15.2	ZNF345	NA	chr19:37341260-37352418	inter
CUST_49977_PI429285431	2.7377741	A	3.066216	A	0.796396121405535	0	lncRNA	53719-2_{3001..4840}	hg19_lincRNAsTranscripts_TCONS_l2_00026267 range=chr7:149731355-149745413 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026267 range=chr7:149731355-149745413 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	149734355	149736194	+	NA	NA	NA	NA	NA	"hg19_refFlat_DPP6:range=chr7:153749906-1546841905'pad=0,hg19_refFlat_DPP6:range=chr7:153749906-1546841905'pad=0 3'pad=0 strand=+ repeatMasking=none,-114.10"	NA	inter
CUST_26162_PI429285431	3.76926	P	3.732027	P	1.02614385756741	0	lncRNA	27673-1_{1..569}	lnc-CTC-241N9.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTC-241N9.1.1-1:1	chr5	179390969	179391537	+	lnc-CTC-241N9.1.1-1	lnc-CTC-241N9.1.1-1:1	ENSG00000249412.1	CTC-563A5.2	RNF130	NA	chr5:179380969-179401419	inner
CUST_44005_PI429285431	6.872621	P	6.5929313	P	1.21393375910737	0	lncRNA	48697-1_{1..3000}	"gi|383792161|ref|NR_047549.1| Homo sapiens solute carrier family 25 (aspartate/glutamate carrier), member 12 (SLC25A12), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|383792161|ref|NR_047549.1| Homo sapiens solute carrier family 25 (aspartate/glutamate carrier), member 12 (SLC25A12), transcript variant 2, non-coding RNA"	Chr2	172639915	172642914	-	8604	NR_047549.1	NA	NA	NA	NA	NA	inter
CUST_23949_PI429285431	0.91446364	A	0.90782017	A	1.00461552135649	0	lncRNA	25505-1_{1..587}	lnc-HERPUD2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-HERPUD2-2:3	chr7	 35840096	 35840682	-	lnc-HERPUD2-2	lnc-HERPUD2-2:3	ENSG00000228878.2	AC007551.3	7-Sep	NA	chr7:35840627-35850198	inter
CUST_7800_PI429285431	2.4086404	A	3.321369	P	0.531179509415498	0	lncRNA	9424-2_{3001..5230}	lnc-ZNF446-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF446-1:1	chr19	 59021758	 59023987	+	lnc-ZNF446-1	lnc-ZNF446-1:1	ENSG00000249146	ENST00000514271	SLC27A5	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_SLC27A5:range=chr19:59009882-590233225'pad=0,hg19_refFlat_SLC27A5:range=chr19:59009882-590233225'pad=0 3'pad=0 strand=- repeatMasking=none,-105.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10chr19:59009700-59023432"	NA	inner
CUST_51033_PI429285431	0.9227327	A	1.111965	A	0.877072312853715	0	lncRNA	54675-1_{1..886}	hg19_lincRNAsTranscripts_TCONS_l2_00007058 range=chr13:19869195-19891192 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007058 range=chr13:19869195-19891192 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 19869195	 19870080	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49996_PI429285431	1.1266139	A	0.8996434	A	1.17037470959297	0	lncRNA	53733-1_{1..475}	hg19_lincRNAsTranscripts_TCONS_l2_00027541 range=chr8:687570-952276 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027541 range=chr8:687570-952276 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	   687570	   688044	+	NA	NA	NA	NA	ERICH1	NA	chr8:677570-681226	inter
CUST_35939_PI429285431	1.1437063	A	1.6034201	A	0.72713049157174	0	lncRNA	37302-1_{1..3000}	n344577|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_125|NULL|-1.3161100|-0.2749986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344577|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_125|NULL|-1.3161100|-0.2749986	chr5	 36700302	 36703301	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10"	NA	inter
CUST_6711_PI429285431	7.884974	P	7.7970266	P	1.06285692237584	0	lncRNA	6659-1_{1..503}	"transcript_id ""ENST00000427333.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427333.1"" | genecode_v17"	chr20	 48789087	 48789589	+	ENSG00000231742.1	ENST00000427333.1	RP11-112L6.4	RP11-112L6.4-002	NA	NA	NA	inter
CUST_23854_PI429285431	5.813732	P	6.0086327	P	0.873633025584788	0	lncRNA	25417-1_{1..235}	lnc-BHLHA9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BHLHA9-1:1	chr17	  1088227	  1088461	+	lnc-BHLHA9-1	lnc-BHLHA9-1:1	ENSG00000235361.1	AC016292.1	ABR	NA	chr17:1078227-1090616	inner
CUST_38515_PI429285431	8.239878	P	8.624653	P	0.76589843731027	0	lncRNA	39526-1_{1..911}	n383106|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gzc.1||4.5462600|-0.4465352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383106|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gzc.1||4.5462600|-0.4465352	chr17	 22024074	 22024984	+	NA	NA	NA	NA	MTRNR2L1	NA	chr17:22022437-22023991	inter
CUST_51427_PI429285431	5.265431	P	5.675518	P	0.752577989021035	0	lncRNA	55006-1_{1..514}	hg19_lincRNAsTranscripts_TCONS_l2_00009604 range=chr16:15013098-15014454 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009604 range=chr16:15013098-15014454 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 15013098	 15013611	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18367_PI429285431	2.0849192	A	0.90601885	A	2.26404141668781	0	lncRNA	20094-1_{1..1094}	lnc-VAMP1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-VAMP1-1:6	chr12	  6560635	  6561728	-	lnc-VAMP1-1	lnc-VAMP1-1:6	ENSG00000215039	AC005840.1	TAPBPL	"hg19_refFlat_CD27:range=chr12:6554262-65605585'pad=0,hg19_refFlat_CD27:range=chr12:6554262-65605585'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50chr12:6561177-6570668"	NA	inter
CUST_46561_PI429285431	0.92936724	A	0.92543757	A	1.0027275527028	0	lncRNA	50745-2_{3001..3176}	"gi|254939593|ref|NR_028139.1| Homo sapiens uncharacterized LOC388182 (FLJ42289), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|254939593|ref|NR_028139.1| Homo sapiens uncharacterized LOC388182 (FLJ42289), transcript variant 1, non-coding RNA"	Chr15	100887662	100887837	-	388182	NR_028139.1	NA	NA	NA	NA	NA	inter
CUST_19950_PI429285431	5.141631	P	5.4219937	P	0.823383988819207	0	lncRNA	21605-1_{1..701}	lnc-TSTA3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSTA3-1:2	chr8	144715620	144716320	-	lnc-TSTA3-1	lnc-TSTA3-1:2	ENSG00000254812.1	RP11-661A12.12	ZNF623	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50chr8:144718373-144725926"	NA	inter
CUST_18021_PI429285431	4.4234123	P	5.0201464	P	0.661249164743021	0	lncRNA	19754-1_{1..920}	lnc-TMEM18-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM18-7:1	chr2	   558891	   559810	-	lnc-TMEM18-7	lnc-TMEM18-7:1	XLOC_001929	linc-FAM150B-2	NA	NA	NA	inter
CUST_24344_PI429285431	5.3851924	P	5.666071	P	0.823089603764401	0	lncRNA	25897-1_{1..1571}	lnc-PCBP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PCBP2-1:1	chr12	 53861005	 53862575	+	lnc-PCBP2-1	lnc-PCBP2-1:1	ENSG00000257379.1	RP11-793H13.8	PCBP2	NA	chr12:53851005-53871312	inner
CUST_42034_PI429285431	12.737389	P	12.828466	P	0.938821638877215	0	lncRNA	43908-1_{1..96}	ENST00000384839 ncrna:miRNA chromosome:GRCh37:12:54427734:54427829:1 gene:ENSG00000207571 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384839 ncrna:miRNA chromosome:GRCh37:12:54427734:54427829:1 gene:ENSG00000207571 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 54427734	 54427829	+	ENSG00000207571	ENST00000384839	NA	NA	HOXC6	NA	chr12:54417734-54424607	inner
CUST_48542_PI429285431	4.9721546	P	4.1161904	P	1.80996801145133	0	lncRNA	52391-1_{1..961}	hg19_lincRNAsTranscripts_TCONS_l2_00013892 range=chr2:111003287-111024369 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013892 range=chr2:111003287-111024369 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	111003287	111004247	+	NA	NA	NA	NA	LOC100287119	NA	chr2:111025028-111034369	inter
CUST_25001_PI429285431	1.3594079	A	2.4863482	A	0.457885790537042	0	lncRNA	26542-1_{1..694}	lnc-RP11-82I10.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-82I10.1.1-3:1	chr15	 98535018	 98535711	-	lnc-RP11-82I10.1.1-3	lnc-RP11-82I10.1.1-3:1	ENSG00000259478.1	RP11-753A21.1	NA	NA	NA	inter
LNCA_21_P0007508	3.756681	P	4.6848826	P	0.525513015027284	0	lncRNA	TCONS_00020258	NA	NA	NA	NA	XLOC_010211	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010211), lincRNA [TCONS_00020258]"	chr12:116972134-116972075	hs|12q24.22	Agilent_HUMAN_G3V2	TCONS_00020258	TCONS_00020258	chr12	116972075	116972134	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19142_PI429285431	1.6829698	A	1.4885832	A	1.14423755426299	0	lncRNA	20817-1_{1..2199}	lnc-THNSL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,"	>lnc-THNSL1-2:1	NA	NA	     2198	NA	NA	NA	NA	NA	NA	"hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.64;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	Unknown
CUST_36346_PI429285431	14.499585	P	14.609609	P	0.926572647732919	0	lncRNA	37574-1_{1..2049}	n344871|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_420|NULL|-1.2775300|-0.2642136	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344871|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_420|NULL|-1.2775300|-0.2642136	chr6	 34231227	 34233275	-	NA	NA	NA	NA	NUDT3	NA	chr6:34254971-34259288	inter
CUST_21493_PI429285431	1.002405	A	0.92792946	A	1.05297817934918	0	lncRNA	23111-1_{1..572}	lnc-TIMP3-6:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMP3-6:6	chr22	 34146591	 34147162	+	lnc-TIMP3-6	lnc-TIMP3-6:6	ENSG00000224973.1	CTA-282F2.3	LARGE	NA	chr22:34136591-34156644	inner
CUST_28848_PI429285431	3.371516	P	3.1090648	P	1.19951500106115	0	lncRNA	30556-1_{1..527}	n326263|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088025|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088025|-1.0180200|-0.1608066	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326263|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088025|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088025|-1.0180200|-0.1608066	chr1	206968655	206969181	+	NA	NA	NA	NA	IL19	NA	chr1:206972215-206983152	inner
CUST_30540_PI429285431	14.72585	P	15.004722	P	0.824235210197198	0	lncRNA	32320-1_{1..345}	n335710|CR623702|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000302897|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000302897|-1.0154600|-0.3786643	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335710|CR623702|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000302897|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000302897|-1.0154600|-0.3786643	chr1	155978839	155979183	-	NA	NA	NA	NA	SSR2	NA	chr1:155978839-155989184	inner
CUST_27747_PI429285431	9.530558	P	9.647128	P	0.922377994740404	0	lncRNA	29329-1_{1..462}	n324964|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079667|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079667|-1.2026300|-0.2738625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324964|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079667|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079667|-1.2026300|-0.2738625	chr20	 48090659	 48091120	-	NA	NA	NA	NA	KCNB1	NA	chr20:48080659-48099181	inner
CUST_43134_PI429285431	2.5299098	A	3.0059237	A	0.718961339380357	0	lncRNA	47948-1_{1..984}	ENST00000576245 havana:lincRNA chromosome:GRCh37:HSCHR5_1_CTG1:69054485:69055468:-1 gene:ENSG00000262391 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000576245 havana:lincRNA chromosome:GRCh37:HSCHR5_1_CTG1:69054485:69055468:-1 gene:ENSG00000262391 gene_biotype:lincRNA transcript_biotype:lincRNA	chrHSCHR5_1_CTG1	 69054485	 69055468	-	ENSG00000262391	ENST00000576245	NA	NA	NA	NA	NA	Unknown
CUST_12843_PI429285431	1.3868375	A	0.9193916	A	1.3826594850457	0	lncRNA	14470-2_{3001..6000}	lnc-ARFGEF2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ARFGEF2-2:2	chr20	 47103198	 47106197	+	lnc-ARFGEF2-2	lnc-ARFGEF2-2:2	XLOC_013552	linc-ARFGEF2-3	NA	NA	NA	inter
CUST_23877_PI429285431	5.1001635	P	4.443183	P	1.57677903563964	0	lncRNA	25436-1_{1..971}	lnc-LIN54-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIN54-1:9	chr4	 83821487	 83822457	-	lnc-LIN54-1	lnc-LIN54-1:9	ENSG00000251022.1	RP11-163O17.1	SEC31A	NA	chr4:83811487-83812419	inter
CUST_29492_PI429285431	10.200977	P	10.57885	P	0.769571352227783	0	lncRNA	31250-1_{1..423}	n332919|AF086420|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067299|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067299|-1.0567400|-0.3425616	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332919|AF086420|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067299|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067299|-1.0567400|-0.3425616	chr14	105717013	105717435	+	NA	NA	NA	NA	BRF1	NA	chr14:105707013-105727436	inner
CUST_31882_PI429285431	1.4208052	A	1.1391339	A	1.21560229186906	0	lncRNA	33613-2_{3001..3202}	n338436|AL832086|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|833|NULL|0.2696740|-0.2446237	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338436|AL832086|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|833|NULL|0.2696740|-0.2446237	chr14	 89058574	 89058775	+	NA	NA	NA	NA	ZC3H14	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90chr14:89045574-89068752"	NA	inner
CUST_3815_PI429285431	1.5713654	A	0.98009694	A	1.50657078669689	0	lncRNA	3783-1_{1..318}	"transcript_id ""ENST00000411666.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411666.1"" | genecode_v17"	chr10	120117057	120117374	+	ENSG00000232139.1	ENST00000411666.1	LINC00867	LINC00867-002	NA	NA	NA	inter
CUST_10641_PI429285431	0.9708395	A	0.9926342	A	0.985006602431718	0	lncRNA	12174-1_{1..3000}	lnc-UQCRFS1-9:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UQCRFS1-9:4	chr19	 28284440	 28287439	-	lnc-UQCRFS1-9	lnc-UQCRFS1-9:4	XLOC_013282	linc-ZNF681-4	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40"	NA	inter
CUST_27980_PI429285431	4.2625637	P	4.443775	P	0.881962181792768	0	lncRNA	29585-1_{1..3000}	n325230|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329691|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329691|-0.2045730|-0.2787295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325230|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329691|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329691|-0.2045730|-0.2787295	chr2	100191147	100194146	+	NA	NA	NA	NA	AFF3	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr2:100181147-100244378"	NA	inner
CUST_34287_PI429285431	1.7924657	A	1.8905647	A	0.934263234072711	0	lncRNA	35785-1_{1..1925}	n341146|AK026722|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3612|NULL|-0.7423130|-0.1833917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341146|AK026722|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3612|NULL|-0.7423130|-0.1833917	chr11	125970399	125972323	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5516_PI429285431	0.9125689	A	1.0561746	A	0.90525384213271	0	lncRNA	5447-1_{1..594}	"transcript_id ""ENST00000562769.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562769.1"" | genecode_v17"	chr16	 34977639	 34978232	+	ENSG00000261122.1	ENST00000562769.1	RP11-352B15.1	RP11-352B15.1-003	NA	NA	NA	inter
CUST_45006_PI429285431	7.2601495	P	6.501868	P	1.69147458465434	0	lncRNA	49510-1_{1..3000}	"gi|392307003|ref|NR_052016.1| Homo sapiens GATA zinc finger domain containing 1 (GATAD1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392307003|ref|NR_052016.1| Homo sapiens GATA zinc finger domain containing 1 (GATAD1), transcript variant 2, non-coding RNA"	Chr7	 92076762	 92079761	+	57798	NR_052016.1	NA	NA	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20"	NA	inter
CUST_18184_PI429285431	0.9409695	A	0.96281123	A	0.98497449300863	0	lncRNA	19920-1_{1..706}	lnc-HSCB-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HSCB-1:10	chr22	 28320335	 28321040	+	lnc-HSCB-1	lnc-HSCB-1:10	ENSG00000235954	TTC28-AS1	PITPNB	NA	chr22:28310335-28315255	inter
CUST_10257_PI429285431	8.253804	P	8.762366	P	0.702922723971803	0	lncRNA	11784-1_{1..1086}	lnc-PPP1R32-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP1R32-1:2	chr11	 61273234	 61274319	+	lnc-PPP1R32-1	lnc-PPP1R32-1:2	XLOC_009146	linc-LRRC10B	SYT7	NA	chr11:61282785-61284098	inter
CUST_19844_PI429285431	1.0977318	A	1.7792767	A	0.623497249125338	0	lncRNA	21501-1_{1..240}	lnc-RRAS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RRAS2-1:1	chr11	 14295200	 14295439	-	lnc-RRAS2-1	lnc-RRAS2-1:1	ENSG00000254418.1	RP11-21L19.1	SPON1	"hg19_refFlat_SPON1:range=chr11:13984452-142872335'pad=0,hg19_refFlat_SPON1:range=chr11:13984452-142872335'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.00chr11:14285200-14289656"	NA	inter
CUST_69_PI429285431	2.365315	A	2.9025319	A	0.689098967063869	0	lncRNA	65-4_{9001..9667}	"transcript_id ""ENST00000488188.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000488188.2"" | genecode_v17"	chr17	 37922974	 37923640	-	ENSG00000264198.1	ENST00000488188.2	RP11-94L15.2	RP11-94L15.2-001	IKZF3	"hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_IKZF3:range=chr17:37922043-380203795'pad=0,hg19_refFlat_IKZF3:range=chr17:37922043-380203795'pad=0 3'pad=0 strand=- repeatMasking=none,-99.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60chr17:37921198-37930089"	NA	inter
CUST_15053_PI429285431	0.93597865	A	0.9323201	A	1.00253913176612	0	lncRNA	16716-1_{1..278}	lnc-EGLN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EGLN1-1:1	chr1	231664166	231664443	-	lnc-EGLN1-1	lnc-EGLN1-1:1	XLOC_001257	linc-EGLN1-2	TSNAX	NA	chr1:231664399-231674321	inter
CUST_20288_PI429285431	0.9174266	A	0.91988754	A	0.998295660416533	0	lncRNA	21932-1_{1..572}	lnc-FMN2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FMN2-2:1	chr1	240931452	240932023	+	lnc-FMN2-2	lnc-FMN2-2:1	ENSG00000226919.1	RP11-80B9.1	RGS7	NA	chr1:240938817-240941980	inter
CUST_30473_PI429285431	11.2129345	P	8.879125	P	5.04134783993424	0	lncRNA	32253-1_{1..487}	n335618|CR600262|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000279457|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000279457|-1.3467200|-0.4343460	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335618|CR600262|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000279457|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000279457|-1.3467200|-0.4343460	chr7	134654852	134655338	+	NA	NA	NA	NA	CALD1	NA	chr7:134644852-134655480	inner
CUST_3997_PI429285431	0.9030534	A	0.8990871	A	1.00275301225974	0	lncRNA	3957-1_{1..534}	"transcript_id ""ENST00000565473.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565473.1"" | genecode_v17"	chr11	 68383213	 68383746	-	ENSG00000260808.1	ENST00000565473.1	CTD-2007L18.5	CTD-2007L18.5-003	PPP6R3	NA	chr11:68373213-68382802	inter
CUST_49415_PI429285431	4.0983214	P	4.9841065	P	0.541192930912601	0	lncRNA	53220-1_{1..785}	hg19_lincRNAsTranscripts_TCONS_l2_00023263 range=chr5:175570155-175572337 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023263 range=chr5:175570155-175572337 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175570155	175570939	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44664_PI429285431	2.9505877	A	2.8439062	A	1.07674863897898	0	lncRNA	49225-1_{1..921}	"gi|310119690|ref|XR_108628.1| PREDICTED: Homo sapiens QIQN5815 (LOC100129033), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119690|ref|XR_108628.1| PREDICTED: Homo sapiens QIQN5815 (LOC100129033), misc_RNA"	NA	NA	NA	NA	NA	XR_108628.1	NA	NA	NA	NA	NA	Unknown
CUST_5614_PI429285431	3.7073514	P	4.2955465	P	0.6651745608964	0	lncRNA	5542-1_{1..479}	"transcript_id ""ENST00000564291.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564291.1"" | genecode_v17"	chr16	 73545075	 73545553	+	ENSG00000259971.1	ENST00000564291.1	RP11-44L9.3	RP11-44L9.3-001	NA	NA	NA	inter
CUST_33757_PI429285431	1.0528103	A	2.0059679	A	0.516500768218478	0	lncRNA	35312-1_{1..2732}	n340537|AK096528|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2999|NULL|-1.1706500|-0.2084211	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340537|AK096528|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2999|NULL|-1.1706500|-0.2084211	chr17	 17906235	 17908966	-	NA	NA	NA	NA	LRRC48	"hg19_refFlat_LRRC48:range=chr17:17880913-179107595'pad=0,hg19_refFlat_LRRC48:range=chr17:17880913-179107595'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_LRRC48:range=chr17:17880913-179199855'pad=0,hg19_refFlat_LRRC48:range=chr17:17880913-179199855'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10chr17:17896235-17919643"	NA	inner
CUST_18186_PI429285431	7.0698013	P	7.8869905	P	0.567546616172985	0	lncRNA	19922-1_{1..2759}	lnc-BSDC1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BSDC1-1:2	chr1	 32827331	 32830089	-	lnc-BSDC1-1	lnc-BSDC1-1:2	ENSG00000225828	RP4-811H24.6	BSDC1	"hg19_refFlat_TSSK3:range=chr1:32828303-328298575'pad=0,hg19_refFlat_TSSK3:range=chr1:32828303-328298575'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10chr1:32830704-32839824"	NA	inner
CUST_39866_PI429285431	0.914302	A	1.7520288	A	0.559524496414544	0	lncRNA	40764-1_{1..1012}	n406533|NR_024046|lncRNA|Homosapiens||RefGeneNoncode|NR_024046||2.1279800|-0.1554860	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406533|NR_024046|lncRNA|Homosapiens||RefGeneNoncode|NR_024046||2.1279800|-0.1554860	chr3	 47053031	 47054042	+	NA	NA	NA	NA	SETD2	NA	chr3:47057898-47064957	inter
CUST_44292_PI429285431	1.4655071	A	0.9153592	A	1.46423579653379	0	lncRNA	48925-1_{1..592}	"gi|310119323|ref|XR_108519.1| PREDICTED: Homo sapiens uncharacterized LOC100505609, transcript variant 2 (LOC100505609), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310119323|ref|XR_108519.1| PREDICTED: Homo sapiens uncharacterized LOC100505609, transcript variant 2 (LOC100505609), misc_RNA"	NA	NA	NA	NA	NA	XR_108519.1	NA	NA	NA	NA	NA	Unknown
CUST_5811_PI429285431	2.64972	A	2.3022606	A	1.2723180888026	0	lncRNA	5738-1_{1..372}	"transcript_id ""ENST00000577584.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577584.1"" | genecode_v17"	chr17	 32015822	 32016193	+	ENSG00000265689.1	ENST00000577584.1	RP11-118G23.1	RP11-118G23.1-001	ACCN1	NA	chr17:32005822-32026193	inner
CUST_38881_PI429285431	0.9094265	A	1.0556734	A	0.9035980735157	0	lncRNA	39868-1_{1..1938}	n384802|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003mtr.2||-1.3165500|-0.3836346	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384802|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003mtr.2||-1.3165500|-0.3836346	chr6	  1727168	  1729105	-	NA	NA	NA	NA	GMDS	NA	chr6:1717168-1739106	inner
CUST_20468_PI429285431	2.0629606	A	2.5080762	A	0.734525458361734	0	lncRNA	22112-1_{1..357}	lnc-S100A13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-S100A13-1:1	chr1	153618062	153618418	-	lnc-S100A13-1	lnc-S100A13-1:1	ENSG00000233059.1	RP1-178F15.3	CHTOP	NA	chr1:153608062-153618782	inner
CUST_51422_PI429285431	1.808192	A	1.5200099	A	1.22110063283036	0	lncRNA	55001-1_{1..569}	hg19_lincRNAsTranscripts_TCONS_l2_00010000 range=chr16:11478081-11479356 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010000 range=chr16:11478081-11479356 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 11478081	 11478649	-	NA	NA	NA	NA	LOC388210	NA	chr16:11468081-11484311	inter
CUST_39530_PI429285431	0.9114175	A	3.222332	A	0.201532651167289	0	lncRNA	40476-1_{1..994}	n387391|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011djj.1||1.9915200|-0.2511304	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387391|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011djj.1||1.9915200|-0.2511304	chr6	 21666674	 21667667	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44141_PI429285431	11.8741045	P	12.055323	P	0.881957780230633	0	lncRNA	48804-1_{1..1965}	"gi|194353980|ref|NR_024024.1| Homo sapiens acetyl-CoA acyltransferase 1 (ACAA1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|194353980|ref|NR_024024.1| Homo sapiens acetyl-CoA acyltransferase 1 (ACAA1), transcript variant 3, non-coding RNA"	Chr3	 38164201	 38166165	-	30	NR_024024.1	NA	NA	NA	NA	NA	inter
CUST_28904_PI429285431	0.9073514	A	0.9072318	A	1.00008290383913	0	lncRNA	30621-1_{1..1016}	n326328|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000084228|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000084228|-0.3364480|-0.3157102	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326328|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000084228|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000084228|-0.3364480|-0.3157102	chr1	171653835	171654850	-	NA	NA	NA	NA	VAMP4	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60chr1:171669296-171687859"	NA	inter
CUST_27897_PI429285431	0.8944045	A	0.92657596	A	0.977947240429584	0	lncRNA	29492-1_{1..1269}	n325135|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331841|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331841|-1.0760100|-0.3878041	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325135|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331841|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331841|-1.0760100|-0.3878041	chr2	138352793	138354061	-	NA	NA	NA	NA	THSD7B	NA	chr2:138342793-138410447	inner
CUST_3856_PI429285431	0.91663086	A	0.90599203	A	1.00740153194381	0	lncRNA	3825-1_{1..3000}	"transcript_id ""ENST00000531559.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531559.1"" | genecode_v17"	chr11	 12052422	 12055421	+	ENSG00000254486.1	ENST00000531559.1	RP13-631K18.2	RP13-631K18.2-001	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-16.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_22640_PI429285431	5.688687	P	5.6497784	P	1.02733635180719	0	lncRNA	24226-1_{1..499}	lnc-C5orf51-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C5orf51-1:2	chr5	 41870393	 41870891	+	lnc-C5orf51-1	lnc-C5orf51-1:2	ENSG00000248668.1	OXCT1-AS1	OXCT1	"hg19_refFlat_OXCT1:range=chr5:41731831-418704605'pad=0,hg19_refFlat_OXCT1:range=chr5:41731831-418704605'pad=0 3'pad=0 strand=- repeatMasking=none,-100.90chr5:41860393-41870791"	NA	inner
CUST_29059_PI429285431	1.0069503	A	1.1976428	A	0.876185047663665	0	lncRNA	30787-1_{1..338}	n326549|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026938|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026938|-0.8970640|-0.3937067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326549|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026938|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026938|-0.8970640|-0.3937067	chr1	 83145832	 83146169	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30392_PI429285431	6.1846786	P	5.095299	P	2.12782514265761	0	lncRNA	32172-1_{1..417}	n335510|BC062214|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000260282|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000260282|1.9429000|-0.4113902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335510|BC062214|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000260282|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000260282|1.9429000|-0.4113902	chr20	 13763455	 13763871	-	NA	NA	NA	NA	ESF1	NA	chr20:13753455-13765532	inner
CUST_41494_PI429285431	3.791385	P	3.8218045	P	0.979135547813735	0	lncRNA	42708-1_{1..78}	ENST00000516569 ncrna:miRNA chromosome:GRCh37:7:73985677:73985754:1 gene:ENSG00000252378 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516569 ncrna:miRNA chromosome:GRCh37:7:73985677:73985754:1 gene:ENSG00000252378 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 73985677	 73985754	+	ENSG00000252378	ENST00000516569	NA	NA	GTF2IRD1	NA	chr7:73975677-73995754	inner
CUST_48415_PI429285431	3.1529026	A	2.410549	A	1.67290277277287	0	lncRNA	52267-1_{1..1682}	hg19_lincRNAsTranscripts_TCONS_l2_00000569 range=chr1:147554488-147564821 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000569 range=chr1:147554488-147564821 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	147554488	147556169	+	NA	NA	NA	NA	NBPF24	NA	chr1:147552869-147574821	inter
CUST_38900_PI429285431	3.4625175	P	3.3713381	P	1.0652406584773	0	lncRNA	39887-1_{1..620}	n384928|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003oke.2||-0.8017140|-0.2458344	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384928|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003oke.2||-0.8017140|-0.2458344	chr6	 35172922	 35173541	-	NA	NA	NA	NA	SCUBE3	NA	chr6:35182190-35188950	inter
CUST_12949_PI429285431	10.17231	P	9.341418	P	1.77878482244558	0	lncRNA	14577-1_{1..446}	lnc-DLK1-6:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLK1-6:9	chr14	101402515	101402960	+	lnc-DLK1-6	lnc-DLK1-6:9	XLOC_010933	linc-DIO3-7	NA	NA	NA	inter
CUST_14083_PI429285431	0.9154362	A	0.9061932	A	1.00642732657239	0	lncRNA	15728-1_{1..2127}	lnc-AKR1C2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AKR1C2-2:1	chr10	  5226975	  5229101	-	lnc-AKR1C2-2	lnc-AKR1C2-2:1	XLOC_008705	linc-AKR1C2-2	NA	NA	NA	inter
CUST_40614_PI429285431	6.000578	P	5.9630876	P	1.02632695446961	0	lncRNA	41360-1_{1..3000}	n410096|NR_036527|lncRNA|Homosapiens||RefGeneNoncode|NR_036527||24.8797000|-0.1832447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410096|NR_036527|lncRNA|Homosapiens||RefGeneNoncode|NR_036527||24.8797000|-0.1832447	chr9	100000707	100003706	+	NA	NA	NA	NA	C9orf174	NA	chr9:100069910-100139577	inner
LNCA_21_P0009132	0.9288077	A	1.1492587	A	0.858297082777446	0	lncRNA	TCONS_00025047	NA	NA	NA	NA	XLOC_012004	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012004), lincRNA [TCONS_00025047]"	chr16:72461526-72461467	hs|16q22.2	Agilent_HUMAN_G3V2	TCONS_00025047	TCONS_00025047	chr16	 72461467	 72461526	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45069_PI429285431	9.014309	P	8.313552	P	1.62535741421753	0	lncRNA	49554-2_{3001..4583}	"gi|300934784|ref|NR_034053.2| Homo sapiens transportin 3 (TNPO3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300934784|ref|NR_034053.2| Homo sapiens transportin 3 (TNPO3), transcript variant 3, non-coding RNA"	Chr7	128597234	128598816	-	23534	NR_034053.2	NA	NA	NA	NA	NA	inter
CUST_50135_PI429285431	11.420201	P	11.701892	P	0.822626241972804	0	lncRNA	53861-2_{3001..4918}	hg19_lincRNAsTranscripts_TCONS_l2_00029075 range=chr9:132250951-132269891 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029075 range=chr9:132250951-132269891 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132253951	132255868	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10"	NA	inter
CUST_12812_PI429285431	2.5702446	A	2.5601804	A	1.00700036062506	0	lncRNA	14441-1_{1..357}	lnc-MAP1LC3B2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP1LC3B2-7:1	chr12	116716315	116716671	+	lnc-MAP1LC3B2-7	lnc-MAP1LC3B2-7:1	XLOC_009895	linc-MAP1LC3B2-4	MED13L	NA	chr12:116706315-116714991	inter
CUST_40346_PI429285431	5.2949405	P	3.913933	P	2.60450191887658	0	lncRNA	41149-2_{3001..3822}	n409064|NR_033124|lncRNA|Homosapiens||RefGeneNoncode|NR_033124||9.3581200|-0.1442070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409064|NR_033124|lncRNA|Homosapiens||RefGeneNoncode|NR_033124||9.3581200|-0.1442070	chrX	110927345	110928166	+	NA	NA	NA	NA	ALG13	NA	chrX:110924346-111003877	inner
CUST_7322_PI429285431	0.94214225	A	0.9227103	A	1.01356031968531	0	lncRNA	8588-1_{1..286}	"transcript_id ""ENST00000516079.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516079.1"" | genecode_v17"	chr16	 82226110	 82226395	-	ENSG00000251888.1	ENST00000516079.1	RN7SKP190	RN7SKP190-201	NA	NA	NA	inter
CUST_50867_PI429285431	3.4863806	P	4.6737375	P	0.439106592635886	0	lncRNA	54511-1_{1..627}	hg19_lincRNAsTranscripts_TCONS_l2_00004764 range=chr11:112160940-112164831 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004764 range=chr11:112160940-112164831 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	112160940	112161566	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45308_PI429285431	2.6910942	A	2.2744124	A	1.33485385621609	0	lncRNA	49750-1_{1..2646}	"gi|383792197|ref|NR_047532.1| Homo sapiens CDKN2B antisense RNA 1 (CDKN2B-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|383792197|ref|NR_047532.1| Homo sapiens CDKN2B antisense RNA 1 (CDKN2B-AS1), transcript variant 2, non-coding RNA"	Chr9	 21994790	 21997435	+	100048912	NR_047532.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80"	NA	inter
CUST_3743_PI429285431	0.92636234	A	0.91600776	A	1.00720306610768	0	lncRNA	3712-1_{1..579}	"transcript_id ""ENST00000455498.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455498.1"" | genecode_v17"	chr10	 80455819	 80456397	-	ENSG00000228683.1	ENST00000455498.1	RP11-31E13.2	RP11-31E13.2-001	NA	NA	NA	inter
CUST_31867_PI429285431	0.92646325	A	0.91622406	A	1.00712251095859	0	lncRNA	33599-1_{1..2581}	n338419|AK125410|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|816|NULL|-0.8742890|-0.2437413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338419|AK125410|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|816|NULL|-0.8742890|-0.2437413	chr1	183900821	183903401	-	NA	NA	NA	NA	RGL1	NA	chr1:183890821-183897666	inter
LNCA_21_P0006606	6.221882	P	6.1780334	P	1.03086013209617	0	lncRNA	TCONS_00017647	NA	NA	NA	NA	XLOC_008323	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008323), lincRNA [TCONS_00017647]"	chrY:14774351-14774292	hs|Yq11.21	Agilent_HUMAN_G3V2	TCONS_00017647	TCONS_00017647	chrY	 14774292	 14774351	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39181_PI429285431	7.6959853	P	7.9246936	P	0.853398630219494	0	lncRNA	40156-1_{1..868}	n385923|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vjf.2||4.4957200|-0.0591191	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385923|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vjf.2||4.4957200|-0.0591191	chr1	    17605	    18472	-	NA	NA	NA	NA	LOC100652771	NA	chr1:12190-13639	inter
CUST_9798_PI429285431	0.9396105	A	1.089377	A	0.901396341682968	0	lncRNA	11315-1_{1..1186}	lnc-ZNF583-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF583-1:13	chr19	 56910263	 56911448	+	lnc-ZNF583-1	lnc-ZNF583-1:13	XLOC_013167	linc-ZNF583-1	ZNF583	NA	chr19:56915383-56920709	inter
CUST_2969_PI429285431	0.927504	A	0.92691344	A	1.00040942879205	0	lncRNA	2948-1_{1..557}	"transcript_id ""ENST00000517676.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517676.1"" | genecode_v17"	chr8	  1920736	  1921292	-	ENSG00000253764.1	ENST00000517676.1	RP11-439C15.4	RP11-439C15.4-002	KBTBD11	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-55.70chr8:1922044-1931776"	NA	inter
CUST_3667_PI429285431	3.834426	P	3.9922433	P	0.896380208169741	0	lncRNA	3635-1_{1..1714}	"transcript_id ""ENST00000421320.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421320.1"" | genecode_v17"	chr10	 43366969	 43368682	+	ENSG00000234944.1	ENST00000421320.1	RP11-124O11.1	RP11-124O11.1-001	NA	NA	NA	inter
LNCA_21_P0014829	6.002529	P	7.3386536	P	0.396083195809003	0	lncRNA	XR_132680	XR_132680	XR_132680	NA	NA	LOC100652760	uncharacterized LOC100652760	NA	THC2548955	NA	"PREDICTED: Homo sapiens hypothetical LOC100652760 (LOC100652760), miscRNA [XR_132680]"	chr22:33256590-33256531	hs|22q12.3	Agilent_HUMAN_G3V2	XR_132680	XR_132680	chr22	 33256531	 33256590	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1209_PI429285431	0.93002653	A	1.3261769	A	0.759883222553057	0	lncRNA	1200-1_{1..533}	"transcript_id ""ENST00000453035.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453035.1"" | genecode_v17"	chr2	200496454	200496986	+	ENSG00000238217.1	ENST00000453035.1	AC093590.1	AC093590.1-004	NA	NA	NA	inter
CUST_41721_PI429285431	0.9276341	A	0.92912215	A	0.998969094086955	0	lncRNA	43240-1_{1..72}	ENST00000584140 ncrna:miRNA chromosome:GRCh37:17:57443444:57443515:1 gene:ENSG00000263857 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584140 ncrna:miRNA chromosome:GRCh37:17:57443444:57443515:1 gene:ENSG00000263857 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 57443444	 57443515	+	ENSG00000263857	ENST00000584140	NA	NA	YPEL2	NA	chr17:57433444-57453515	inner
CUST_48230_PI429285431	2.4012895	A	1.1257172	A	2.42094834945882	0	lncRNA	52093-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00001506 range=chr1:146853355-146989742 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001506 range=chr1:146853355-146989742 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	146853355	146856354	-	NA	NA	NA	NA	BCL9	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30chr1:146890733-146999742"	NA	inter
LNCA_21_P0003766	1.0176003	A	1.1126082	A	0.936267120550228	0	lncRNA	TCONS_00008566	NA	NA	NA	NA	XLOC_004060	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004060), lincRNA [TCONS_00008566]"	chr4:124457583-124457524	hs|4q28.1	Agilent_HUMAN_G3V2	TCONS_00008566	TCONS_00008566	chr4	124457524	124457583	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27419_PI429285431	0.9304661	A	0.92907584	A	1.00096411926371	0	lncRNA	28984-1_{1..894}	n324589|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039875|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039875|-1.2216000|-0.3980469	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324589|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039875|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039875|-1.2216000|-0.3980469	chr6	 12691132	 12692025	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18392_PI429285431	0.91515243	A	1.0609685	A	0.903867954038192	0	lncRNA	20117-1_{1..1201}	lnc-PZP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-PZP-1:1	chr12	  9386731	  9387931	-	lnc-PZP-1	lnc-PZP-1:1	ENSG00000256359	RP11-118B22.5	NA	NA	NA	inter
CUST_29242_PI429285431	3.4196997	A	2.957022	P	1.37809724981677	0	lncRNA	30993-1_{1..383}	n332325|FM177952|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000559037_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000559037_05|-0.9487170|-0.3186584	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332325|FM177952|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000559037_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000559037_05|-0.9487170|-0.3186584	chr6	  2468675	  2469057	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10632_PI429285431	3.8277957	P	3.6031637	P	1.16847915702831	0	lncRNA	12164-1_{1..509}	lnc-SH3BGRL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SH3BGRL2-1:1	chr6	 80251234	 80251742	+	lnc-SH3BGRL2-1	lnc-SH3BGRL2-1:1	XLOC_005361	linc-SH3BGRL2-1	LCA5	NA	chr6:80241234-80247147	inter
CUST_15391_PI429285431	1.3629359	A	1.035985	A	1.25435951351671	0	lncRNA	17075-1_{1..547}	lnc-FAM153B-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM153B-3:3	chr5	175412651	175413197	+	lnc-FAM153B-3	lnc-FAM153B-3:3	XLOC_004653	linc-FAM153B	NA	NA	NA	inter
CUST_20358_PI429285431	1.055642	A	0.9136566	A	1.10342257340547	0	lncRNA	21999-1_{1..411}	lnc-DHRS12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHRS12-2:1	chr13	 52197260	 52197670	-	lnc-DHRS12-2	lnc-DHRS12-2:1	ENSG00000226830.1	WDFY2-AS1	WDFY2	NA	chr13:52187260-52207358	inner
CUST_15606_PI429285431	0.97688025	A	0.92797863	A	1.03447703624217	0	lncRNA	17292-1_{1..274}	lnc-ERGIC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERGIC2-1:1	chr12	 29573270	 29573543	-	lnc-ERGIC2-1	lnc-ERGIC2-1:1	XLOC_010039	linc-ERGIC2	OVCH1	NA	chr12:29580489-29583303	inter
CUST_50203_PI429285431	5.678504	P	4.054518	P	3.08225452290405	0	lncRNA	53928-1_{1..292}	hg19_lincRNAsTranscripts_TCONS_l2_00028743 range=chr9:43313921-43314368 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028743 range=chr9:43313921-43314368 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 43313921	 43314212	+	NA	NA	NA	NA	FAM75A6	NA	chr9:43313699-43324368	inter
CUST_14250_PI429285431	0.9213288	A	0.9199074	A	1.00098572491022	0	lncRNA	15907-2_{3001..3446}	lnc-HSP90AA1-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HSP90AA1-10:1	chr14	101992556	101993001	-	lnc-HSP90AA1-10	lnc-HSP90AA1-10:1	XLOC_011137	linc-RTL1-5	NA	NA	NA	inter
CUST_10108_PI429285431	0.9241258	A	1.2642184	A	0.78999060435027	0	lncRNA	11632-1_{1..499}	lnc-NKIRAS1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-NKIRAS1-3:3	chr3	 23243916	 23244414	-	lnc-NKIRAS1-3	lnc-NKIRAS1-3:3	XLOC_003065	linc-ZNF385D-1	UBE2E2	NA	chr3:23244784-23254069	inter
CUST_27078_PI429285431	1.0060093	A	0.9577056	A	1.03404838962252	0	lncRNA	28610-1_{1..672}	n324187|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327545|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327545|0.0618541|-0.2522364	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324187|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327545|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327545|0.0618541|-0.2522364	chr7	145003907	145004578	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.90"	NA	inter
CUST_49227_PI429285431	0.9280825	A	1.1837282	A	0.83761216476131	0	lncRNA	53047-1_{1..1125}	hg19_lincRNAsTranscripts_TCONS_l2_00020950 range=chr4:188329844-188337228 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020950 range=chr4:188329844-188337228 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	188329844	188330968	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40004_PI429285431	2.1561205	A	2.9874423	P	0.562014087988173	0	lncRNA	40868-1_{1..1928}	n407145|NR_026557|lncRNA|Homosapiens||RefGeneNoncode|NR_026557||4.8958100|-0.0590281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407145|NR_026557|lncRNA|Homosapiens||RefGeneNoncode|NR_026557||4.8958100|-0.0590281	chr19	  1524077	  1526004	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_31554_PI429285431	1.1502793	A	2.293314	A	0.452806100391802	0	lncRNA	33312-1_{1..1788}	n338045|BC042092|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|432|NULL|-0.4695130|-0.2404166	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n338045|BC042092|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|432|NULL|-0.4695130|-0.2404166	chr15	 77934105	 77935892	+	NA	NA	NA	NA	LINGO1	NA	chr15:77924105-77924709	inter
CUST_33461_PI429285431	1.3793708	A	0.9140212	A	1.38065187830013	0	lncRNA	35034-2_{3001..3527}	n340195|AK125988|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2656|NULL|-1.2698700|-0.3063604	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n340195|AK125988|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2656|NULL|-1.2698700|-0.3063604	chr4	106927473	106927999	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49050_PI429285431	0.92866266	A	1.2776322	A	0.785144695465119	0	lncRNA	52878-1_{1..381}	hg19_lincRNAsTranscripts_TCONS_l2_00020893 range=chr4:174818381-174850665 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020893 range=chr4:174818381-174850665 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	174818381	174818761	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22469_PI429285431	4.0615807	P	3.7675362	P	1.22607267774239	0	lncRNA	24056-1_{1..716}	lnc-TRAM1L1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TRAM1L1-3:2	chr4	117218115	117218830	-	lnc-TRAM1L1-3	lnc-TRAM1L1-3:2	ENSG00000248173.1	RP11-659O3.1	NA	NA	NA	inter
CUST_46587_PI429285431	0.92692906	A	1.3334637	A	0.754433351363245	0	lncRNA	50771-1_{1..3000}	"gi|371872713|ref|NR_045816.1| Homo sapiens activating transcription factor 7 interacting protein 2 (ATF7IP2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371872713|ref|NR_045816.1| Homo sapiens activating transcription factor 7 interacting protein 2 (ATF7IP2), transcript variant 4, non-coding RNA"	Chr16	 10479912	 10482911	+	80063	NR_045816.1	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80"	NA	inter
CUST_43388_PI429285431	7.809187	P	7.7861986	P	1.01606197330715	0	lncRNA	48201-2_{3001..5697}	"gi|379698827|ref|NR_046428.1| Homo sapiens chloride channel, voltage-sensitive 6 (CLCN6), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379698827|ref|NR_046428.1| Homo sapiens chloride channel, voltage-sensitive 6 (CLCN6), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_046428.1	NA	NA	NA	NA	NA	Unknown
CUST_6661_PI429285431	0.8774276	A	2.0037413	A	0.458084705445423	0	lncRNA	6607-1_{1..569}	"transcript_id ""ENST00000438222.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438222.1"" | genecode_v17"	chr20	 21928285	 21928853	+	ENSG00000238034.1	ENST00000438222.1	RP5-1185K9.1	RP5-1185K9.1-001	NA	NA	NA	inter
CUST_37336_PI429285431	1.0968124	A	0.99203223	A	1.07533052497408	0	lncRNA	38440-1_{1..2002}	n345778|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1327|NULL|-1.3059900|-0.2402716	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345778|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1327|NULL|-1.3059900|-0.2402716	chr4	185286376	185288377	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10"	NA	inter
CUST_25541_PI429285431	0.92525303	A	1.0001903	A	0.949383400309134	0	lncRNA	27071-1_{1..569}	lnc-TRH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TRH-1:1	chr3	129837900	129838468	+	lnc-TRH-1	lnc-TRH-1:1	ENSG00000249846.1	RP11-77P16.4	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10"	NA	inter
CUST_46755_PI429285431	1.8283083	A	1.5445384	A	1.217371840689	0	lncRNA	50905-1_{1..635}	"gi|224548973|ref|NR_027175.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 19, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|224548973|ref|NR_027175.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 19, non-coding RNA"	Chr17	 16342301	 16342935	+	125144	NR_027175.1	NA	NA	NA	NA	NA	inter
CUST_17006_PI429285431	11.379297	P	11.851272	P	0.720976929200007	0	lncRNA	18716-1_{1..414}	lnc-LRGUK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRGUK-1:1	chr7	133970608	133971021	+	lnc-LRGUK-1	lnc-LRGUK-1:1	XLOC_006260	linc-AKR1B10-2	SLC35B4	NA	chr7:133974089-133980807	inter
CUST_5165_PI429285431	5.438172	P	5.4427986	P	0.996798221913105	0	lncRNA	5105-1_{1..639}	"transcript_id ""ENST00000560049.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560049.1"" | genecode_v17"	chr15	 44827450	 44828088	-	ENSG00000179523.4	ENST00000560049.1	RP11-151N17.2	RP11-151N17.2-002	EIF3J	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40chr15:44829266-44839098"	NA	inter
CUST_26927_PI429285431	1.2136029	A	1.054295	A	1.11675127362711	0	lncRNA	28446-1_{1..436}	n324005|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053524|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053524|-1.3590300|-0.2666636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324005|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053524|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053524|-1.3590300|-0.2666636	chr9	107863455	107863890	-	NA	NA	NA	NA	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
LNCA_21_P0012354	0.9676089	A	1.3843653	A	0.749106943730723	0	lncRNA	BC040576	NA	BC040576	NA	Hs.272317	XLOC_l2_009504	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009504), lincRNA [TCONS_l2_00018373]"	chr22:25675555-25675496	hs|22q11.23	Agilent_HUMAN_G3V2	BC040576	BC040576	chr22	 25675496	 25675555	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_23_P102681	6.3576813	P	5.608181	P	1.68121041611703	0	lncRNA	XR_109628	XR_109628	XR_109628	    79160	Hs.280135	MGC4294	uncharacterized MGC4294	NA	THC2483328	NA	"PREDICTED: Homo sapiens hypothetical MGC4294 (MGC4294), miscRNA [XR_109628]"	chr20:57210641-57210700	hs|20q13.32	Agilent_HUMAN_G3V2	XR_109628	XR_109628	chr20	 57210641	 57210700	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17004_PI429285431	2.2899542	A	2.303855	A	0.990410970448483	0	lncRNA	18714-1_{1..393}	lnc-CNOT6-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CNOT6-4:2	chr5	179722035	179722427	+	lnc-CNOT6-4	lnc-CNOT6-4:2	XLOC_004678	linc-CNOT6-3	MAPK9	NA	chr5:179712035-179719071	inter
CUST_2167_PI429285431	1.2366227	A	1.4754021	A	0.847462008987412	0	lncRNA	2159-1_{1..3000}	"transcript_id ""ENST00000510444.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510444.1"" | genecode_v17"	chr5	 57186154	 57189153	-	ENSG00000249584.1	ENST00000510444.1	RP11-478P10.1	RP11-478P10.1-001	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-60.80"	NA	inter
LNCA_21_P0003032	0.97925764	A	0.92729706	A	1.03667277472904	0	lncRNA	TCONS_00006222	NA	NA	NA	NA	XLOC_002813	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002813), lincRNA [TCONS_00006222]"	chr3:128954837-128954896	hs|3q21.3	Agilent_HUMAN_G3V2	TCONS_00006222	TCONS_00006222	chr3	128954837	128954896	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38800_PI429285431	1.9831431	A	1.0883908	A	1.85929063145834	0	lncRNA	39794-1_{1..2962}	n384507|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ifn.2||-0.0305281|-0.3476600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384507|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ifn.2||-0.0305281|-0.3476600	chr4	128758921	128761882	+	NA	NA	NA	NA	HSPA4L	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-15.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.82;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-24.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20chr4:128748921-128754522"	NA	inter
CUST_51742_PI429285431	2.7969794	A	3.7622116	P	0.512195967568245	0	lncRNA	55295-1_{1..260}	hg19_lincRNAsTranscripts_TCONS_l2_00012130 range=chr18:68297832-68309946 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012130 range=chr18:68297832-68309946 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 68297832	 68298091	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44742_PI429285431	1.3828956	A	1.4477954	A	0.956011713501751	0	lncRNA	49293-1_{1..3000}	"gi|393715073|ref|NR_072996.1| Homo sapiens mitogen-activated protein kinase 13 (MAPK13), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393715073|ref|NR_072996.1| Homo sapiens mitogen-activated protein kinase 13 (MAPK13), transcript variant 2, non-coding RNA"	Chr6	 36098261	 36101260	+	5603	NR_072996.1	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.90"	NA	inter
CUST_17098_PI429285431	4.8191657	P	4.669671	P	1.10918091643825	0	lncRNA	18806-1_{1..314}	lnc-DFFB-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DFFB-3:1	chr1	  4069726	  4070039	+	lnc-DFFB-3	lnc-DFFB-3:1	XLOC_000031	linc-AJAP1-5	NA	NA	NA	inter
CUST_36578_PI429285431	0.918028	A	0.92341506	A	0.9962729373534	0	lncRNA	37771-2_{3001..4146}	n345073|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_622|NULL|-1.3948200|-0.3445521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345073|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_622|NULL|-1.3948200|-0.3445521	chrX	113025023	113026168	-	NA	NA	NA	NA	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-21.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-26.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00"	NA	inter
CUST_51845_PI429285431	2.696843	A	2.8229249	A	0.916316625045667	0	lncRNA	55400-1_{1..640}	hg19_lincRNAsTranscripts_TCONS_l2_00013123 range=chr19:43716353-43725020 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013123 range=chr19:43716353-43725020 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 43716353	 43716992	-	NA	NA	NA	NA	PSG9	NA	chr19:43724140-43735020	inter
CUST_23455_PI429285431	3.4274433	P	3.719654	P	0.816649713885531	0	lncRNA	25023-1_{1..3000}	lnc-XPC-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XPC-5:3	chr3	 14581776	 14584775	-	lnc-XPC-5	lnc-XPC-5:3	ENSG00000144596.7	GRIP2	GRIP2	NA	chr3:14571776-14583588	inner
CUST_45118_PI429285431	5.5932293	P	5.9259205	P	0.794053875091274	0	lncRNA	49599-1_{1..916}	"gi|397139263|ref|XR_108713.2| PREDICTED: Homo sapiens uncharacterized LOC100506380, transcript variant 2 (LOC100506380), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139263|ref|XR_108713.2| PREDICTED: Homo sapiens uncharacterized LOC100506380, transcript variant 2 (LOC100506380), misc_RNA"	NA	NA	NA	NA	NA	XR_108713.2	NA	NA	NA	NA	NA	Unknown
CUST_44224_PI429285431	8.030648	P	7.671935	P	1.28228148897554	0	lncRNA	48873-1_{1..2068}	"gi|209954672|ref|NR_024251.1| Homo sapiens family with sequence similarity 86, member J, pseudogene (FAM86JP), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209954672|ref|NR_024251.1| Homo sapiens family with sequence similarity 86, member J, pseudogene (FAM86JP), transcript variant 1, non-coding RNA"	Chr3	125635444	125637511	+	100125556	NR_024251.1	NA	NA	NA	"hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.60;hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30;hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0 3'pad=0 strand=- repeatMasking=none,-95.60"	NA	inter
CUST_17427_PI429285431	2.6293044	A	2.724136	A	0.936381541113578	0	lncRNA	19151-1_{1..395}	lnc-ASTN2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASTN2-3:1	chr9	120786450	120786844	-	lnc-ASTN2-3	lnc-ASTN2-3:1	XLOC_007841	linc-ASTN2-3	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60"	NA	inter
CUST_9736_PI429285431	0.9261493	A	1.4067432	A	0.716682533662593	0	lncRNA	11253-1_{1..233}	lnc-CELF4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CELF4-4:1	chr18	 36308161	 36308393	-	lnc-CELF4-4	lnc-CELF4-4:1	XLOC_012822	linc-CELF4-9	NA	NA	NA	inter
CUST_8303_PI429285431	14.432975	P	13.403306	P	2.04155580002557	0	lncRNA	9888-1_{1..413}	lnc-SERPINC1-1:25	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:25	chr1	173835315	173835727	-	lnc-SERPINC1-1	lnc-SERPINC1-1:25	ENSG00000234741	GAS5	DARS2	NA	chr1:173825315-173827682	inter
CUST_12207_PI429285431	0.9244561	A	0.92745054	A	0.997926564899156	0	lncRNA	13809-1_{1..736}	lnc-PHYHIPL-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHYHIPL-2:3	chr10	 60760989	 60761724	+	lnc-PHYHIPL-2	lnc-PHYHIPL-2:3	XLOC_008489	linc-PHYHIPL	NA	NA	NA	inter
CUST_29368_PI429285431	1.6662529	A	2.2268693	A	0.678012417009821	0	lncRNA	31120-1_{1..245}	n332633|AB014683|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000058366|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000058366|0.7157330|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332633|AB014683|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000058366|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000058366|0.7157330|-1.0000000	chr3	184090686	184090930	-	NA	NA	NA	NA	THPO	NA	chr3:184089773-184095932	inner
CUST_11905_PI429285431	2.706146	A	3.0785606	P	0.772488520905916	0	lncRNA	13487-1_{1..979}	lnc-C1orf180-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf180-1:2	chr1	 85086440	 85087418	-	lnc-C1orf180-1	lnc-C1orf180-1:2	XLOC_000895	linc-CTBS	NA	NA	NA	inter
CUST_9259_PI429285431	2.80403	A	1.8312365	A	1.96263718573798	0	lncRNA	10766-3_{6001..8217}	lnc-WRNIP1-2:23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRNIP1-2:23	chr6	  2419014	  2421230	+	lnc-WRNIP1-2	lnc-WRNIP1-2:23	ENSG00000250903	XLOC_005127	NA	NA	NA	inter
CUST_51484_PI429285431	7.932542	P	7.7449255	P	1.13888059752703	0	lncRNA	55060-1_{1..1128}	hg19_lincRNAsTranscripts_TCONS_l2_00009761 range=chr16:52689323-52690584 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009761 range=chr16:52689323-52690584 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 52689323	 52690450	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17366_PI429285431	0.9251037	A	1.0188136	A	0.937109863851066	0	lncRNA	19086-1_{1..240}	lnc-TMTC3-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMTC3-5:3	chr12	 90460773	 90461012	+	lnc-TMTC3-5	lnc-TMTC3-5:3	XLOC_009828	linc-CLLU1-7	NA	NA	NA	inter
CUST_35336_PI429285431	1.2060182	A	1.7228914	A	0.698884908963436	0	lncRNA	36746-1_{1..343}	n342377|X64978|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4869|NULL|1.8352400|-0.0905166	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342377|X64978|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4869|NULL|1.8352400|-0.0905166	chr1	248201940	248202282	+	NA	NA	NA	NA	OR2L13	NA	chr1:248191940-248212283	inner
CUST_36645_PI429285431	7.9341855	P	7.709673	P	1.16838237463669	0	lncRNA	37835-1_{1..1144}	n345139|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_688|NULL|-1.3251700|-0.2743142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345139|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_688|NULL|-1.3251700|-0.2743142	chr11	 17401301	 17402444	+	NA	NA	NA	NA	B7H6	NA	chr11:17391301-17398868	inter
CUST_32521_PI429285431	5.290604	P	5.449922	P	0.895448272908692	0	lncRNA	34187-1_{1..434}	n339126|AJ001827|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1556|NULL|-1.0675800|-0.1908727	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339126|AJ001827|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1556|NULL|-1.0675800|-0.1908727	chr16	 23583179	 23583612	-	NA	NA	NA	NA	NDUFAB1	NA	chr16:23592335-23593599	inner
CUST_46913_PI429285431	0.9080264	A	0.90319127	A	1.00335707913757	0	lncRNA	51029-1_{1..1660}	"gi|224589130|ref|NR_027283.1| Homo sapiens Rho GTPase activating protein 27 pseudogene (LOC440461), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224589130|ref|NR_027283.1| Homo sapiens Rho GTPase activating protein 27 pseudogene (LOC440461), non-coding RNA"	NW_003871088.1	   258671	   260330	+	440461	NR_027283.1	NA	NA	NA	NA	NA	Unknown
CUST_32206_PI429285431	1.0382127	A	0.92087126	A	1.08473410050461	0	lncRNA	33903-1_{1..3000}	n338783|AK095013|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1205|NULL|-1.2802600|-0.3762596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338783|AK095013|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1205|NULL|-1.2802600|-0.3762596	chr2	 40324915	 40327914	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28004_PI429285431	2.0063798	A	2.6622493	A	0.634692852004074	0	lncRNA	29614-1_{1..436}	n325259|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327034|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327034|-1.0725400|-0.3333203	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325259|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327034|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327034|-1.0725400|-0.3333203	chr2	 68912679	 68913114	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49205_PI429285431	1.8822894	A	1.8572338	A	1.0175189054911	0	lncRNA	53024-1_{1..528}	hg19_lincRNAsTranscripts_TCONS_l2_00020853 range=chr4:161730282-161740018 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020853 range=chr4:161730282-161740018 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	161730282	161730809	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19444_PI429285431	1.7431215	A	1.4417526	A	1.23231313809047	0	lncRNA	21103-2_{3001..3574}	lnc-TCL1B-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TCL1B-1:6	chr14	 96161268	 96161841	+	lnc-TCL1B-1	lnc-TCL1B-1:6	ENSG00000259084.1	RP11-1070N10.6	TCL1B	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80chr14:96152754-96158980"	NA	inner
CUST_6178_PI429285431	1.2301934	A	1.9747642	A	0.596845405880492	0	lncRNA	6102-1_{1..340}	"transcript_id ""ENST00000591105.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591105.1"" | genecode_v17"	chr18	 47266193	 47266532	-	ENSG00000267674.1	ENST00000591105.1	RP11-813F20.2	RP11-813F20.2-001	NA	NA	NA	inter
CUST_44553_PI429285431	0.91506076	A	0.8989067	A	1.01126006376033	0	lncRNA	49137-2_{3001..5914}	"gi|259906428|ref|NR_028509.1| Homo sapiens prostate androgen-regulated transcript 1 (non-protein coding) (PART1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|259906428|ref|NR_028509.1| Homo sapiens prostate androgen-regulated transcript 1 (non-protein coding) (PART1), transcript variant 3, non-coding RNA"	Chr5	 59786759	 59789672	+	25859	NR_028509.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70"	NA	inter
CUST_27957_PI429285431	0.908417	A	0.9148948	A	0.995519996482463	0	lncRNA	29561-1_{1..675}	n325205|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329328|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329328|-0.8937790|-0.4652702	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325205|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329328|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329328|-0.8937790|-0.4652702	chr2	104790462	104791136	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00"	NA	inter
CUST_21535_PI429285431	4.1840143	P	4.4491014	P	0.832148493794543	0	lncRNA	23153-1_{1..521}	lnc-FPGS-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FPGS-1:2	chr9	130583569	130584089	+	lnc-FPGS-1	lnc-FPGS-1:2	ENSG00000225032.1	RP11-228B15.4	ENG	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ENG:range=chr9:130578196-1306166345'pad=0,hg19_refFlat_ENG:range=chr9:130578196-1306166345'pad=0 3'pad=0 strand=- repeatMasking=none,-99.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ENG:range=chr9:130577961-1306166345'pad=0,hg19_refFlat_ENG:range=chr9:130577961-1306166345'pad=0 3'pad=0 strand=- repeatMasking=none,-99.10chr9:130577291-130593710"	NA	inner
CUST_51085_PI429285431	3.230725	P	3.5514126	P	0.800688172245456	0	lncRNA	54722-1_{1..1273}	hg19_lincRNAsTranscripts_TCONS_l2_00006858 range=chr13:53095196-53161223 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006858 range=chr13:53095196-53161223 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 53095196	 53096468	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45077_PI429285431	5.725368	P	5.667176	P	1.04116015049109	0	lncRNA	49560-1_{1..2037}	"gi|205277373|ref|NR_024153.1| Homo sapiens uncharacterized LOC378805 (FLJ43663), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|205277373|ref|NR_024153.1| Homo sapiens uncharacterized LOC378805 (FLJ43663), transcript variant 2, non-coding RNA"	Chr7	130628919	130630955	-	378805	NR_024153.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008327	0.9292643	A	2.0552979	A	0.458173651465785	0	lncRNA	TCONS_00022971	NA	NA	NA	NA	XLOC_010810	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010810), lincRNA [TCONS_00022971]"	chr14:39434339-39434398	hs|14q21.1	Agilent_HUMAN_G3V2	TCONS_00022971	TCONS_00022971	chr14	 39434339	 39434398	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43353_PI429285431	1.6876054	A	2.9764967	A	0.409265425777584	0	lncRNA	48172-1_{1..3000}	"gi|310118483|ref|XR_108282.1| PREDICTED: Homo sapiens uncharacterized LOC284600 (LOC284600), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310118483|ref|XR_108282.1| PREDICTED: Homo sapiens uncharacterized LOC284600 (LOC284600), misc_RNA"	Chr1	   846815	   849814	+	284600	XR_108282.2	NA	NA	NA	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20"	NA	inter
CUST_52087_PI429285431	4.1872587	P	2.956983	A	2.34611820040501	0	lncRNA	55613-3_{6001..6364}	hg19_lincRNAsTranscripts_TCONS_l2_00017551 range=chr22:17082492-17134956 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017551 range=chr22:17082492-17134956 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17088492	 17088855	+	NA	NA	NA	NA	CCT8L2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PARP4:range=chr13:24995257-250779145'pad=0,hg19_refFlat_PARP4:range=chr13:24995257-250779145'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-57.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SLC25A15:range=chr13:41367363-413838035'pad=0,hg19_refFlat_SLC25A15:range=chr13:41367363-413838035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20chr22:17072492-17073700"	NA	inter
LNCA_33_P3232339	4.598078	P	4.245227	P	1.27708185673657	0	lncRNA	XR_109159	XR_109159	XR_109159	100129119	NA	LOC100129119	uncharacterized LOC100129119	NA	THC2567287	NA	"PREDICTED: Homo sapiens hypothetical LOC100129119, transcript variant 1 (LOC100129119), miscRNA [XR_109159]"	chr15:72900881-72900822	hs|15q24.1	Agilent_HUMAN_G3V2	XR_109159	XR_109159	chr15	 72900822	 72900881	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45175_PI429285431	5.5751257	P	3.2431664	P	5.03488665237412	0	lncRNA	49649-1_{1..3000}	"gi|241982816|ref|NR_027878.1| Homo sapiens ADAM metallopeptidase domain 9 (ADAM9), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|241982816|ref|NR_027878.1| Homo sapiens ADAM metallopeptidase domain 9 (ADAM9), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_027878.1	NA	NA	NA	NA	NA	Unknown
CUST_17626_PI429285431	2.857381	A	2.5528069	A	1.23505398130892	0	lncRNA	19351-1_{1..309}	lnc-UROS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UROS-1:1	chr10	127474218	127474526	-	lnc-UROS-1	lnc-UROS-1:1	XLOC_008984	linc-MMP21	UROS	NA	chr10:127477147-127484348	inter
CUST_5744_PI429285431	5.9195933	P	6.1663575	P	0.842784566416016	0	lncRNA	5669-1_{1..347}	"transcript_id ""ENST00000582780.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582780.1"" | genecode_v17"	chr17	 15691101	 15691447	-	ENSG00000265519.1	ENST00000582780.1	CTD-3157E16.1	CTD-3157E16.1-001	NA	NA	NA	inter
CUST_47666_PI429285431	0.90943736	A	1.4434423	A	0.690634859232549	0	lncRNA	51648-1_{1..1658}	"gi|225903386|ref|NR_027419.1| Homo sapiens arginine vasopressin receptor 2 (AVPR2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225903386|ref|NR_027419.1| Homo sapiens arginine vasopressin receptor 2 (AVPR2), transcript variant 3, non-coding RNA"	NW_003871103.3	  1336513	  1338170	+	554	NR_027419.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001587	0.9254106	A	0.9094358	A	1.01113441889977	0	lncRNA	THC2642525	NA	NA	NA	NA	XLOC_001054	NA	NA	THC2642525	NA	"BROAD Institute lincRNA (XLOC_001054), lincRNA [TCONS_00001695]"	chr1:158100570-158100511	hs|1q23.1	Agilent_HUMAN_G3V2	THC2642525	THC2642525	chr1	158100511	158100570	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11268_PI429285431	4.1866455	P	4.3413157	P	0.89833770935968	0	lncRNA	12829-1_{1..736}	lnc-TCF7-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF7-3:2	chr5	133135386	133136121	+	lnc-TCF7-3	lnc-TCF7-3:2	XLOC_004554	linc-TCF7-3	NA	NA	NA	inter
CUST_34950_PI429285431	0.91646373	A	0.905301	A	1.00776742597392	0	lncRNA	36367-1_{1..1387}	n341868|BC041929|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4348|NULL|-1.0350900|-0.2887657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341868|BC041929|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4348|NULL|-1.0350900|-0.2887657	chr12	 26287896	 26289282	+	NA	NA	NA	NA	BHLHE41	NA	chr12:26277896-26278003	inter
CUST_22942_PI429285431	1.2776031	A	1.7966976	A	0.697809672349794	0	lncRNA	24518-1_{1..765}	lnc-AC006156.2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC006156.2-2:1	chrY	  9234756	  9235520	-	lnc-AC006156.2-2	lnc-AC006156.2-2:1	ENSG00000228383.2	FAM197Y7	FAM197Y6	NA	chrY:9224756-9233681	inner
CUST_41703_PI429285431	1.4238168	A	1.1777043	A	1.18600697951197	0	lncRNA	43200-1_{1..78}	ENST00000585225 ncrna:miRNA chromosome:GRCh37:2:152224848:152224925:1 gene:ENSG00000264684 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585225 ncrna:miRNA chromosome:GRCh37:2:152224848:152224925:1 gene:ENSG00000264684 gene_biotype:miRNA transcript_biotype:miRNA	chr2	152224848	152224925	+	ENSG00000264684	ENST00000585225	NA	NA	TNFAIP6	NA	chr2:152214848-152234925	inner
CUST_1153_PI429285431	4.6303988	P	4.6926527	P	0.957766645971362	0	lncRNA	1142-1_{1..506}	"transcript_id ""ENST00000457108.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457108.1"" | genecode_v17"	chr2	166689558	166690063	-	ENSG00000232411.1	ENST00000457108.1	AC009495.3	AC009495.3-001	NA	NA	NA	inter
CUST_19447_PI429285431	0.9151314	A	0.9047394	A	1.00722919084399	0	lncRNA	21106-1_{1..436}	lnc-TOMM20L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TOMM20L-1:1	chr14	 58893782	 58894217	+	lnc-TOMM20L-1	lnc-TOMM20L-1:1	ENSG00000258378.1	RP11-517O13.1	KIAA0586	NA	chr14:58894710-58903843	inner
CUST_47308_PI429285431	8.055484	P	8.140426	P	0.942822439009826	0	lncRNA	51370-3_{6001..6115}	"gi|386781512|ref|NR_048539.1| Homo sapiens solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 (SLC9A8), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386781512|ref|NR_048539.1| Homo sapiens solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 (SLC9A8), transcript variant 5, non-coding RNA"	Chr20	 48435250	 48435364	+	23315	NR_048539.1	NA	NA	NA	NA	NA	inter
CUST_35110_PI429285431	3.4411244	P	4.455716	P	0.494968424686667	0	lncRNA	36516-1_{1..633}	n342079|L08434|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4561|NULL|-1.0175800|-0.3480170	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342079|L08434|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4561|NULL|-1.0175800|-0.3480170	chr6	 86208158	 86208790	-	NA	NA	NA	NA	SNX14	NA	chr6:86215214-86218764	inter
CUST_46916_PI429285431	5.9752026	P	6.0942297	P	0.920808400311855	0	lncRNA	51031-1_{1..3000}	"gi|310123704|ref|XR_109424.1| PREDICTED: Homo sapiens uncharacterized LOC400618 (FLJ37644), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310123704|ref|XR_109424.1| PREDICTED: Homo sapiens uncharacterized LOC400618 (FLJ37644), misc_RNA"	NA	NA	NA	NA	NA	XR_109424.1	NA	NA	NA	NA	NA	Unknown
CUST_18680_PI429285431	4.6728473	P	4.099738	P	1.48772646979053	0	lncRNA	20381-1_{1..542}	lnc-MYC-2:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYC-2:16	chr8	129008807	129009348	+	lnc-MYC-2	lnc-MYC-2:16	ENSG00000249859	PVT1	NA	NA	NA	inter
CUST_43818_PI429285431	8.583536	P	8.980228	P	0.759597993666096	0	lncRNA	48542-1_{1..2573}	"gi|388596711|ref|NR_049783.1| Homo sapiens sorting nexin 17 (SNX17), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388596711|ref|NR_049783.1| Homo sapiens sorting nexin 17 (SNX17), transcript variant 6, non-coding RNA"	Chr2	 27593363	 27595935	+	9784	NR_049783.1	NA	NA	NA	NA	NA	inter
CUST_8000_PI429285431	2.3122044	A	0.9192802	A	2.62610427024432	0	lncRNA	9611-1_{1..2713}	lnc-TMEM160-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM160-1:1	chr19	 47504132	 47506844	-	lnc-TMEM160-1	lnc-TMEM160-1:1	ENSG00000246803	ENST00000501576	ARHGAP35	"hg19_refFlat_ARHGAP35:range=chr19:47421933-475039455'pad=0,hg19_refFlat_ARHGAP35:range=chr19:47421933-475039455'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60chr19:47494132-47508334"	NA	inner
CUST_28462_PI429285431	3.6737523	P	3.132474	P	1.45526138064314	0	lncRNA	30127-1_{1..2796}	n325795|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044167|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044167|2.8766900|-0.2900566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325795|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044167|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044167|2.8766900|-0.2900566	chr13	 23411695	 23414490	-	NA	NA	NA	NA	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.70"	NA	inter
CUST_36686_PI429285431	0.8988342	A	0.89476985	A	1.00282116475989	0	lncRNA	37869-1_{1..1212}	n345176|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_725|NULL|-1.3575800|-0.3960633	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345176|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_725|NULL|-1.3575800|-0.3960633	chr12	 47654717	 47655928	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36562_PI429285431	6.3814197	P	6.372126	P	1.00646269562865	0	lncRNA	37758-1_{1..931}	n345060|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_609|NULL|-1.5496400|-0.2786554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345060|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_609|NULL|-1.5496400|-0.2786554	chr9	129999485	130000415	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19071_PI429285431	1.7043061	A	2.9996395	A	0.407441997402351	0	lncRNA	20762-1_{1..1339}	lnc-SEPT7L-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SEPT7L-2:2	chr10	 38982029	 38983367	-	lnc-SEPT7L-2	lnc-SEPT7L-2:2	ENSG00000233867	RP11-453N3.4	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00"	NA	inter
CUST_39680_PI429285431	0.89634657	A	0.89409417	A	1.00156246408651	0	lncRNA	40620-1_{1..2043}	n405389|NR_002139|lncRNA|Homosapiens||RefGeneNoncode|NR_002139||0.3086160|-0.3352011	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405389|NR_002139|lncRNA|Homosapiens||RefGeneNoncode|NR_002139||0.3086160|-0.3352011	chr6	  1059226	  1061268	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30"	NA	inter
CUST_21271_PI429285431	0.9162478	A	0.91837776	A	0.998524713537859	0	lncRNA	22896-1_{1..395}	lnc-VPS13C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VPS13C-1:1	chr15	 62007314	 62007708	-	lnc-VPS13C-1	lnc-VPS13C-1:1	ENSG00000259675.1	RP11-507B12.1	NA	NA	NA	inter
CUST_36299_PI429285431	1.6333886	A	1.5577102	A	1.05385647549435	0	lncRNA	37531-1_{1..334}	n344826|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_375|NULL|-1.3562400|-0.4168815	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344826|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_375|NULL|-1.3562400|-0.4168815	chr5	 71886458	 71886791	-	NA	NA	NA	NA	LOC389300	NA	chr5:71876458-71896792	inter
CUST_37508_PI429285431	4.310675	P	4.165593	P	1.10579350270132	0	lncRNA	38611-1_{1..2139}	n345981|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1530|NULL|-1.3150900|-0.2132486	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345981|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1530|NULL|-1.3150900|-0.2132486	chr17	 62745937	 62748075	-	NA	NA	NA	NA	NA	"hg19_refFlat_SNRNP200:range=chr2:96940750-969711755'pad=0,hg19_refFlat_SNRNP200:range=chr2:96940750-969711755'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70"	NA	inter
CUST_24905_PI429285431	0.9160856	A	0.9092948	A	1.00471811931262	0	lncRNA	26446-1_{1..507}	lnc-USP8-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP8-2:7	chr15	 50659578	 50660084	+	lnc-USP8-2	lnc-USP8-2:7	ENSG00000244879.2	CTD-3110H11.2	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-61.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10"	NA	inter
CUST_28449_PI429285431	1.4517524	A	2.4667895	A	0.49481560348449	0	lncRNA	30109-1_{1..1056}	n325776|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044351|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044351|-1.2508300|-0.3579233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325776|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044351|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044351|-1.2508300|-0.3579233	chr13	 29829878	 29830933	-	NA	NA	NA	NA	MTUS2	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70chr13:29819878-29859282"	NA	inner
CUST_44209_PI429285431	3.092626	A	4.153963	P	0.479187772412935	0	lncRNA	48863-1_{1..1142}	"gi|345842481|ref|NR_045114.1| Homo sapiens PVRL3 antisense RNA 1 (PVRL3-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|345842481|ref|NR_045114.1| Homo sapiens PVRL3 antisense RNA 1 (PVRL3-AS1), non-coding RNA"	Chr3	110764162	110765303	-	100506555	NR_045114.1	NA	NA	NA	NA	NA	inter
CUST_22674_PI429285431	9.064048	P	9.099178	P	0.975943815362421	0	lncRNA	24257-1_{1..553}	lnc-KLC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-KLC1-1:1	chr14	104028104	104028656	+	lnc-KLC1-1	lnc-KLC1-1:1	ENSG00000258851.1	RP11-894P9.2	C14orf153	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.01;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50chr14:104029299-104038214"	NA	inner
CUST_18673_PI429285431	7.379372	P	7.213642	P	1.12173352874803	0	lncRNA	20374-1_{1..1593}	lnc-RAB23-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAB23-4:1	chr6	 58287599	 58289191	-	lnc-RAB23-4	lnc-RAB23-4:1	ENSG00000215190	GUSBP4	NA	NA	NA	inter
CUST_24692_PI429285431	2.4292238	A	3.00399	A	0.671395047385844	0	lncRNA	26239-1_{1..500}	lnc-GTPBP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTPBP1-2:1	chr22	 39144712	 39145211	+	lnc-GTPBP1-2	lnc-GTPBP1-2:1	ENSG00000225450.1	RP3-508I15.14	SUN2	"hg19_refFlat_SUN2:range=chr22:39132272-391486335'pad=0,hg19_refFlat_SUN2:range=chr22:39132272-391486335'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40chr22:39134712-39152024"	NA	inner
CUST_50754_PI429285431	0.91397536	A	0.92651486	A	0.991345944719551	0	lncRNA	54418-1_{1..1886}	hg19_lincRNAsTranscripts_TCONS_l2_00004468 range=chr11:32484345-32522171 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004468 range=chr11:32484345-32522171 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 32484345	 32486230	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50"	NA	inter
CUST_49035_PI429285431	0.9063125	A	3.8365738	P	0.131190822103435	0	lncRNA	52864-1_{1..279}	hg19_lincRNAsTranscripts_TCONS_l2_00021192 range=chr4:82523897-82836508 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021192 range=chr4:82523897-82836508 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 82523897	 82524175	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22656_PI429285431	0.9159237	A	0.9161994	A	0.999808917580891	0	lncRNA	24240-1_{1..534}	lnc-CDYL2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDYL2-3:1	chr16	 80586221	 80586754	-	lnc-CDYL2-3	lnc-CDYL2-3:1	ENSG00000260183.1	RP11-109P11.1	DYNLRB2	NA	chr16:80576221-80584541	inter
LNCA_21_P0000993	0.92988825	A	0.92110634	A	1.00610572054045	0	lncRNA	ENST00000432395	NA	NA	NA	NA	XLOC_000292	NA	ENST00000432395	NA	NA	"BROAD Institute lincRNA (XLOC_000292), lincRNA [TCONS_00000245]"	chr1:90255935-90255994	hs|1p22.2	Agilent_HUMAN_G3V2	ENST00000432395	ENST00000432395	chr1	 90255935	 90255994	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008473	0.93041754	A	2.0088525	A	0.473542244909773	0	lncRNA	TCONS_00022824	NA	NA	NA	NA	XLOC_011096	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011096), lincRNA [TCONS_00022824]"	chr14:88039919-88039860	hs|14q31.3	Agilent_HUMAN_G3V2	TCONS_00022824	TCONS_00022824	chr14	 88039860	 88039919	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43711_PI429285431	4.495458	P	3.78546	P	1.63580184941111	0	lncRNA	48458-1_{1..736}	"gi|397139986|ref|XR_159101.1| PREDICTED: Homo sapiens uncharacterized LOC100505630, transcript variant 3 (LOC100505630), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139986|ref|XR_159101.1| PREDICTED: Homo sapiens uncharacterized LOC100505630, transcript variant 3 (LOC100505630), misc_RNA"	NA	NA	NA	NA	NA	XR_159101.1	NA	NA	NA	NA	NA	Unknown
CUST_20301_PI429285431	1.222321	A	1.6793903	A	0.728464564240666	0	lncRNA	21945-1_{1..184}	lnc-ALX3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALX3-1:2	chr1	110710772	110710955	-	lnc-ALX3-1	lnc-ALX3-1:2	ENSG00000227091.1	RP5-1028L10.1	SLC6A17	"hg19_refFlat_SLC6A17:range=chr1:110709552-1107410665'pad=0,hg19_refFlat_SLC6A17:range=chr1:110709552-1107410665'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.60chr1:110700772-110720842"	NA	inner
CUST_11593_PI429285431	5.7177377	P	5.290448	P	1.344704990177	0	lncRNA	13174-1_{1..512}	lnc-BANP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BANP-2:1	chr16	 88228673	 88229184	+	lnc-BANP-2	lnc-BANP-2:1	XLOC_011827	linc-ZNF469-2	NA	NA	NA	inter
CUST_28870_PI429285431	8.187273	P	8.396006	P	0.86529681650626	0	lncRNA	30584-1_{1..2035}	n326291|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098608|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098608|-1.1249000|-0.4382651	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326291|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098608|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098608|-1.1249000|-0.4382651	chr1	190111247	190113281	+	NA	NA	NA	NA	FAM5C	NA	chr1:190101247-190257013	inner
CUST_14077_PI429285431	0.9107358	A	1.0017163	A	0.938884437539154	0	lncRNA	15722-1_{1..2061}	lnc-AC021218.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC021218.2.1-1:1	chr7	156001178	156003238	+	lnc-AC021218.2.1-1	lnc-AC021218.2.1-1:1	XLOC_006307	linc-RNF32-2	NA	NA	NA	inter
CUST_45045_PI429285431	0.94350725	A	1.0155983	A	0.951258239530257	0	lncRNA	49541-1_{1..327}	"gi|341915387|ref|XR_132531.1| PREDICTED: Homo sapiens zinc finger domain-related protein TSRM (TSRM), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915387|ref|XR_132531.1| PREDICTED: Homo sapiens zinc finger domain-related protein TSRM (TSRM), misc_RNA"	NA	NA	NA	NA	NA	XR_132531.1	NA	NA	NA	NA	NA	Unknown
CUST_45754_PI429285431	0.9263038	A	0.928991	A	0.998139108506016	0	lncRNA	50101-3_{6001..8741}	"gi|157787204|ref|NR_003945.1| Homo sapiens GTPase, very large interferon inducible pseudogene 1 (GVINP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|157787204|ref|NR_003945.1| Homo sapiens GTPase, very large interferon inducible pseudogene 1 (GVINP1), non-coding RNA"	Chr11	  6740370	  6743110	-	387751	NR_003945.1	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90"	NA	inter
CUST_46268_PI429285431	0.90575397	A	0.9309304	A	0.98270041483971	0	lncRNA	50507-1_{1..747}	"gi|310124559|ref|XR_110304.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 403 (LINC00403), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310124559|ref|XR_110304.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 403 (LINC00403), misc_RNA"	Chr13	112760736	112761482	+	100505996	XR_110304.2	NA	NA	NA	NA	NA	inter
CUST_35725_PI429285431	3.5406492	P	2.578077	A	1.94878130716486	0	lncRNA	37142-2_{3001..4731}	n342890|CR749601|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5397|NULL|-1.2036900|-0.4510099	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342890|CR749601|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5397|NULL|-1.2036900|-0.4510099	chr12	 22841920	 22843650	+	NA	NA	NA	NA	ETNK1	NA	chr12:22828920-22843608	inner
CUST_24104_PI429285431	6.735766	P	6.2516985	P	1.39868152192794	0	lncRNA	25655-1_{1..546}	lnc-EIF6-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF6-1:6	chr20	 33865812	 33866357	-	lnc-EIF6-1	lnc-EIF6-1:6	ENSG00000126005.10	MT1P3	MMP24	"hg19_refFlat_MT1F:range=chr16:56691971-566930765'pad=0,hg19_refFlat_MT1F:range=chr16:56691971-566930765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_MT1G:range=chr16:56700791-567019055'pad=0,hg19_refFlat_MT1G:range=chr16:56700791-567019055'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MT2A:range=chr16:56642568-566432665'pad=0,hg19_refFlat_MT2A:range=chr16:56642568-566432665'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MT1H:range=chr16:56703797-567049015'pad=0,hg19_refFlat_MT1H:range=chr16:56703797-567049015'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MT1B:range=chr16:56685866-566869775'pad=0,hg19_refFlat_MT1B:range=chr16:56685866-566869775'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MT1E:range=chr16:56659764-566608835'pad=0,hg19_refFlat_MT1E:range=chr16:56659764-566608835'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_MT1M:range=chr16:56666644-566677545'pad=0,hg19_refFlat_MT1M:range=chr16:56666644-566677545'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MT1A:range=chr16:56672651-566738625'pad=0,hg19_refFlat_MT1A:range=chr16:56672651-566738625'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30chr20:33855812-33864804"	NA	inter
CUST_25916_PI429285431	1.0760595	A	0.90482813	A	1.12601915524865	0	lncRNA	27435-1_{1..416}	lnc-MGMT-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MGMT-4:1	chr10	131703095	131703510	+	lnc-MGMT-4	lnc-MGMT-4:1	ENSG00000234440.1	RP11-234G16.2	EBF3	NA	chr10:131693095-131713216	inner
CUST_28943_PI429285431	0.9152564	A	1.1130543	A	0.871880368383456	0	lncRNA	30663-1_{1..429}	n326372|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046192|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046192|-1.0423700|-0.3000452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326372|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046192|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046192|-1.0423700|-0.3000452	chr1	154232737	154233165	-	NA	NA	NA	NA	UBAP2L	NA	chr1:154222737-154243329	inner
CUST_16891_PI429285431	3.205601	A	3.67218	P	0.72367859236715	0	lncRNA	18600-1_{1..3000}	lnc-TMEM105-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-TMEM105-3:1	chr17	 79363690	 79366689	-	lnc-TMEM105-3	lnc-TMEM105-3:1	XLOC_012587	linc-TMEM105-2	BAHCC1	NA	chr17:79373540-79377287	inter
CUST_38049_PI429285431	1.9373629	A	1.3912699	A	1.46012613127579	0	lncRNA	39128-1_{1..637}	n377622|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030008||-1.1602600|-0.2889008	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377622|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030008||-1.1602600|-0.2889008	chr6	  1272215	  1272851	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19861_PI429285431	1.120715	A	0.97910935	A	1.10313216582326	0	lncRNA	21518-1_{1..1083}	lnc-ZDHHC17-6:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZDHHC17-6:6	chr12	 76698254	 76699336	+	lnc-ZDHHC17-6	lnc-ZDHHC17-6:6	ENSG00000257219.1	RP11-54A9.1	NA	NA	NA	inter
CUST_48794_PI429285431	0.96798116	A	0.97750825	A	0.993418080776127	0	lncRNA	52632-1_{1..1580}	hg19_lincRNAsTranscripts_TCONS_l2_00014268 range=chr2:223184391-223186428 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014268 range=chr2:223184391-223186428 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	223184391	223185970	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48269_PI429285431	0.91492087	A	1.2134922	A	0.813057150907724	0	lncRNA	52131-1_{1..605}	hg19_lincRNAsTranscripts_TCONS_l2_00000063 range=chr1:3816937-3830508 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000063 range=chr1:3816937-3830508 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	  3816937	  3817541	+	NA	NA	NA	NA	C1orf174	NA	chr1:3806937-3816857	inter
CUST_44383_PI429285431	5.7010922	P	7.2389607	P	0.344393901274706	0	lncRNA	49003-1_{1..1207}	"gi|373432599|ref|NR_046035.1| Homo sapiens chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) (CXCL1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373432599|ref|NR_046035.1| Homo sapiens chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) (CXCL1), transcript variant 2, non-coding RNA"	Chr4	 74735109	 74736315	+	2919	NR_046035.1	NA	NA	NA	NA	NA	inter
CUST_13642_PI429285431	2.005575	A	2.7134495	A	0.612221451010118	0	lncRNA	15280-1_{1..994}	lnc-SCD-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCD-1:6	chr10	102154866	102155859	+	lnc-SCD-1	lnc-SCD-1:6	XLOC_008583	linc-WNT8B	NA	NA	NA	inter
CUST_31982_PI429285431	0.920532	A	0.9224333	A	0.998682987289057	0	lncRNA	33704-1_{1..438}	n338541|M91159|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|945|NULL|-0.0443149|-0.3721996	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338541|M91159|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|945|NULL|-0.0443149|-0.3721996	chr1	226257216	226257653	+	NA	NA	NA	NA	H3F3A	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-13.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90chr1:226250408-226259703"	NA	inter
CUST_31467_PI429285431	0.91345656	A	0.9071852	A	1.00435643730539	0	lncRNA	33234-1_{1..1571}	n337947|AK092120|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|332|NULL|-1.1226700|-0.1957967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337947|AK092120|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|332|NULL|-1.1226700|-0.1957967	chr15	 70709595	 70711165	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3601_PI429285431	1.9248767	A	1.0106412	A	1.88457015269972	0	lncRNA	3571-1_{1..680}	"transcript_id ""ENST00000428920.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428920.2"" | genecode_v17"	chr10	  5276321	  5277000	+	ENSG00000231039.2	ENST00000428920.2	RP11-445P17.3	RP11-445P17.3-001	NA	NA	NA	inter
CUST_25758_PI429285431	8.412776	P	8.006544	P	1.32522010875012	0	lncRNA	27284-1_{1..3000}	lnc-CKB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CKB-1:1	chr14	103991347	103994346	-	lnc-CKB-1	lnc-CKB-1:1	ENSG00000260285.1	RP11-600F24.7	TRMT61A	NA	chr14:103995509-104003410	inter
CUST_36162_PI429285431	0.91417253	A	1.1070822	A	0.874839538630971	0	lncRNA	37435-1_{1..513}	n344723|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_272|NULL|-1.5731900|-0.3268024	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344723|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_272|NULL|-1.5731900|-0.3268024	chr2	  8031425	  8031937	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1256_PI429285431	3.8942165	P	3.978806	P	0.9430528310922	0	lncRNA	1248-1_{1..808}	"transcript_id ""ENST00000422118.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422118.1"" | genecode_v17"	chr2	224363491	224364298	+	ENSG00000231189.1	ENST00000422118.1	AC013448.1	AC013448.1-001	NA	NA	NA	inter
CUST_515_PI429285431	0.9504402	A	0.92241424	A	1.01961602990675	0	lncRNA	507-1_{1..2393}	"transcript_id ""ENST00000429725.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429725.1"" | genecode_v17"	chr1	187610358	187612750	+	ENSG00000230426.1	ENST00000429725.1	ERVMER61-1	ERVMER61-1-001	NA	NA	NA	inter
CUST_9977_PI429285431	0.92968154	A	1.2950569	A	0.776266879820796	0	lncRNA	11501-1_{1..466}	lnc-PRNT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRNT-1:1	chr20	  4552523	  4552988	-	lnc-PRNT-1	lnc-PRNT-1:1	XLOC_013639	linc-ADRA1D-3	NA	NA	NA	inter
LNCA_21_P0005377	1.0382284	A	0.9990332	A	1.02754045859179	0	lncRNA	TCONS_00013440	NA	NA	NA	NA	XLOC_006088	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006088), lincRNA [TCONS_00013440]"	chr7:47630726-47630785	hs|7p12.3	Agilent_HUMAN_G3V2	TCONS_00013440	TCONS_00013440	chr7	 47630726	 47630785	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2339_PI429285431	0.950621	A	0.93925756	A	1.00790763791406	0	lncRNA	2331-1_{1..674}	"transcript_id ""ENST00000514657.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514657.1"" | genecode_v17"	chr5	122035085	122035758	-	ENSG00000251538.1	ENST00000514657.1	RP11-166A12.1	RP11-166A12.1-003	NA	NA	NA	inter
CUST_1562_PI429285431	1.0097116	A	0.9595209	A	1.03540177748271	0	lncRNA	1550-1_{1..2046}	"transcript_id ""ENST00000425388.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425388.1"" | genecode_v17"	chr3	177012230	177014275	+	ENSG00000203645.2	ENST00000425388.1	LINC00501	LINC00501-001	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10"	NA	inter
LNCA_21_P0002850	10.196022	P	10.894916	P	0.61604429805314	0	lncRNA	XR_110050	XR_110050	XR_110050	NA	NA	LOC100506301	uncharacterized LOC100506301	ENST00000416124	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506301 (LOC100506301), miscRNA [XR_110050]"	chr3:44462678-44462622	hs|3p21.31	Agilent_HUMAN_G3V2	XR_110050	XR_110050	chr3	 44462622	 44462678	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44571_PI429285431	4.532191	P	3.6170058	P	1.88581113949263	0	lncRNA	49153-1_{1..2519}	"gi|397139105|ref|XR_108587.2| PREDICTED: Homo sapiens uncharacterized LOC645079 (FLJ41309), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139105|ref|XR_108587.2| PREDICTED: Homo sapiens uncharacterized LOC645079 (FLJ41309), misc_RNA"	Chr5	 81678764	 81681282	+	645079	XR_108587.2	NA	NA	NA	NA	NA	inter
CUST_38155_PI429285431	6.7418146	P	6.960292	P	0.859472032611383	0	lncRNA	39227-2_{3001..3838}	n381375|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hzq.1||1.6402700|-0.1785249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n381375|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hzq.1||1.6402700|-0.1785249	chr1	243222611	243223448	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70"	NA	inter
CUST_40389_PI429285431	9.592634	P	9.282878	P	1.23949804849359	0	lncRNA	41182-1_{1..569}	n409239|NR_033405|lncRNA|Homosapiens||RefGeneNoncode|NR_033405||1.9041900|-0.2659846	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409239|NR_033405|lncRNA|Homosapiens||RefGeneNoncode|NR_033405||1.9041900|-0.2659846	chr9	 90459659	 90460227	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32296_PI429285431	1.0132701	A	0.93989944	A	1.05217207056371	0	lncRNA	33979-2_{3001..3677}	n338872|AK124872|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1298|NULL|-1.1708100|-0.3980945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338872|AK124872|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1298|NULL|-1.1708100|-0.3980945	chr2	 69701058	 69701734	-	NA	NA	NA	NA	AAK1	NA	chr2:69688058-69711735	inner
CUST_10493_PI429285431	0.9067712	A	1.040568	A	0.911429644190358	0	lncRNA	12021-1_{1..298}	lnc-CDH9-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH9-2:6	chr5	 27409693	 27409990	-	lnc-CDH9-2	lnc-CDH9-2:6	XLOC_004761	linc-CDH9-3	NA	NA	NA	inter
CUST_50750_PI429285431	4.469109	P	4.6167293	P	0.902738286069778	0	lncRNA	54415-4_{9001..12000}	hg19_lincRNAsTranscripts_TCONS_l2_00003843 range=chr10:134309449-134331794 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003843 range=chr10:134309449-134331794 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	134318449	134321448	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
CUST_30668_PI429285431	1.6475048	A	0.98068273	A	1.58757205186392	0	lncRNA	32450-1_{1..254}	n336132|X92021|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324499|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324499|-1.3209300|-0.2022560	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336132|X92021|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324499|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324499|-1.3209300|-0.2022560	chr14	 22466241	 22466494	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36546_PI429285431	0.9604701	A	0.9846217	A	0.983398731963836	0	lncRNA	37742-1_{1..1600}	n345044|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_593|NULL|-1.5561200|-0.3675761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345044|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_593|NULL|-1.5561200|-0.3675761	chr9	 14586763	 14588362	+	NA	NA	NA	NA	ZDHHC21	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20chr9:14593576-14599277"	NA	inter
CUST_27992_PI429285431	0.9100472	A	1.6299149	A	0.607153117632872	0	lncRNA	29600-1_{1..596}	n325245|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328231|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328231|-1.1488000|-0.3356236	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325245|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328231|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328231|-1.1488000|-0.3356236	chr2	 77633199	 77633794	-	NA	NA	NA	NA	LRRTM4	NA	chr2:77623199-77683953	inner
CUST_9543_PI429285431	1.7603717	A	2.0406508	A	0.823431702919516	0	lncRNA	11056-1_{1..792}	lnc-DCTD-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCTD-10:1	chr4	181453903	181454694	-	lnc-DCTD-10	lnc-DCTD-10:1	XLOC_004188	linc-AGA-8	NA	NA	NA	inter
CUST_41889_PI429285431	2.8180375	A	2.9910665	A	0.886978475580695	0	lncRNA	43583-1_{1..85}	ENST00000384978 ncrna:miRNA chromosome:GRCh37:19:54200787:54200871:1 gene:ENSG00000207711 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384978 ncrna:miRNA chromosome:GRCh37:19:54200787:54200871:1 gene:ENSG00000207711 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54200787	 54200871	+	ENSG00000207711	ENST00000384978	NA	NA	NA	NA	NA	inter
CUST_16935_PI429285431	3.839858	P	4.6877055	P	0.555613092274955	0	lncRNA	18647-1_{1..1070}	lnc-MX1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MX1-3:3	chr21	 43137161	 43138230	+	lnc-MX1-3	lnc-MX1-3:3	XLOC_013949	linc-UMODL1-3	NA	NA	NA	inter
CUST_24384_PI429285431	5.4965096	P	3.2233026	P	4.83396490817734	0	lncRNA	25937-1_{1..1293}	lnc-DYX1C1-CCPG1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DYX1C1-CCPG1-2:2	chr15	 55790405	 55791697	-	lnc-DYX1C1-CCPG1-2	lnc-DYX1C1-CCPG1-2:2	ENSG00000261771.1	DYX1C1-CCPG1	DYX1C1	NA	chr15:55780405-55800432	inter
CUST_2883_PI429285431	2.35239	A	2.0265088	A	1.25342980140457	0	lncRNA	2864-1_{1..681}	"transcript_id ""ENST00000449361.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449361.1"" | genecode_v17"	chr7	 90940683	 90941363	+	ENSG00000243144.2	ENST00000449361.1	RP11-115N4.1	RP11-115N4.1-001	NA	NA	NA	inter
CUST_19811_PI429285431	1.6843828	A	1.4102745	A	1.20924644794474	0	lncRNA	21468-1_{1..1196}	lnc-SRPK2-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRPK2-4:3	chr7	104444403	104445598	-	lnc-SRPK2-4	lnc-SRPK2-4:3	ENSG00000226869.2	RP11-203P23.1	LHFPL3	NA	chr7:104434403-104454535	inner
CUST_18684_PI429285431	9.463278	P	10.010328	P	0.684418186008079	0	lncRNA	20384-1_{1..1522}	lnc-HIC2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-HIC2-1:5	chr22	 21823906	 21825427	+	lnc-HIC2-1	lnc-HIC2-1:5	ENSG00000206140	KB-1323B2.6	TMEM191C	NA	chr22:21821459-21824224	inner
CUST_51015_PI429285431	0.96652675	A	1.5385592	A	0.67266847401034	0	lncRNA	54661-1_{1..494}	hg19_lincRNAsTranscripts_TCONS_l2_00006958 range=chr13:84660710-84694677 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006958 range=chr13:84660710-84694677 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 84660710	 84661203	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19956_PI429285431	1.0866363	A	0.9147448	A	1.1265345026291	0	lncRNA	21610-1_{1..732}	lnc-FAM86A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM86A-2:1	chr16	  5666127	  5666858	-	lnc-FAM86A-2	lnc-FAM86A-2:1	ENSG00000260338.1	RP11-124K4.1	NA	NA	NA	inter
LNCA_21_P0006799	1.2761408	A	0.92724067	A	1.27358930855307	0	lncRNA	ENST00000446713	NA	NA	NA	NA	XLOC_008981	NA	ENST00000446713	NA	NA	"BROAD Institute lincRNA (XLOC_008981), lincRNA [TCONS_00018063]"	chr10:126619879-126617739	hs|10q26.13	Agilent_HUMAN_G3V2	ENST00000446713	ENST00000446713	chr10	126617739	126619879	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33732_PI429285431	0.93162847	A	0.9207508	A	1.00756832235525	0	lncRNA	35290-1_{1..1156}	n340511|BC030770|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2973|NULL|-1.1521700|-0.3908245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340511|BC030770|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2973|NULL|-1.1521700|-0.3908245	chr17	 12575178	 12576333	-	NA	NA	NA	NA	MYOCD	NA	chr17:12569207-12619452	inner
CUST_51157_PI429285431	0.92607373	A	0.91798997	A	1.0056189629373	0	lncRNA	54779-1_{1..1463}	hg19_lincRNAsTranscripts_TCONS_l2_00007675 range=chr14:36417585-36419101 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007675 range=chr14:36417585-36419101 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 36417585	 36419047	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35162_PI429285431	0.9043196	A	0.90463436	A	0.999781848791883	0	lncRNA	36564-1_{1..1586}	n342137|BC038719|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4622|NULL|1.2287700|-0.3092755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342137|BC038719|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4622|NULL|1.2287700|-0.3092755	chr6	136364989	136366574	-	NA	NA	NA	NA	PDE7B	NA	chr6:136354989-136403965	inner
CUST_44301_PI429285431	8.993507	P	9.704536	P	0.610884271164736	0	lncRNA	48934-1_{1..1450}	"gi|215276961|ref|NR_024533.1| Homo sapiens asparagine-linked glycosylation 3, alpha-1,3- mannosyltransferase homolog (S. cerevisiae) (ALG3), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|215276961|ref|NR_024533.1| Homo sapiens asparagine-linked glycosylation 3, alpha-1,3- mannosyltransferase homolog (S. cerevisiae) (ALG3), transcript variant 5, non-coding RNA"	Chr3	183960117	183961566	-	10195	NR_024533.1	NA	NA	NA	NA	NA	inter
CUST_49570_PI429285431	7.9686522	P	8.495634	P	0.694005114520501	0	lncRNA	53360-1_{1..1985}	hg19_lincRNAsTranscripts_TCONS_l2_00024920 range=chr6:134749609-134846048 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024920 range=chr6:134749609-134846048 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	134749609	134751593	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80"	NA	inter
CUST_22449_PI429285431	1.9310733	A	1.2606682	A	1.59151979386004	0	lncRNA	24036-1_{1..735}	lnc-SSR3-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SSR3-2:3	chr3	156390134	156390868	-	lnc-SSR3-2	lnc-SSR3-2:3	ENSG00000243926.1	TIPARP-AS1	TIPARP	NA	chr3:156392205-156400659	inter
CUST_15860_PI429285431	0.90690327	A	1.0821939	A	0.885589099769857	0	lncRNA	17550-1_{1..456}	lnc-RP11-201M22.1.1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-201M22.1.1-4:2	chr11	 90926517	 90926972	+	lnc-RP11-201M22.1.1-4	lnc-RP11-201M22.1.1-4:2	XLOC_009247	linc-FAT3-4	NA	NA	NA	inter
CUST_18557_PI429285431	7.9663477	P	8.139174	P	0.887103105639622	0	lncRNA	20268-1_{1..494}	lnc-GNAT1-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNAT1-1:11	chr3	 50255702	 50256195	+	lnc-GNAT1-1	lnc-GNAT1-1:11	ENSG00000188338	SLC38A3	SLC38A3	NA	chr3:50245702-50258406	inner
CUST_6221_PI429285431	18.28518	P	18.333237	P	0.967238113871818	0	lncRNA	6147-1_{1..1762}	"transcript_id ""ENST00000585691.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585691.1"" | genecode_v17"	chr18	 57677513	 57679274	+	ENSG00000267462.1	ENST00000585691.1	RP11-866E20.3	RP11-866E20.3-001	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_GABRG2:range=chr5:161495006-1615803745'pad=0,hg19_refFlat_GABRG2:range=chr5:161495006-1615803745'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.60;hg19_refFlat_SDCCAG3:range=chr9:139297240-1393048495'pad=0,hg19_refFlat_SDCCAG3:range=chr9:139297240-1393048495'pad=0 3'pad=0 strand=- repeatMasking=none,-95.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00"	NA	inter
CUST_24679_PI429285431	4.4599237	P	4.5686226	P	0.927424085780891	0	lncRNA	26226-1_{1..561}	lnc-ARC-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARC-1:6	chr8	143744543	143745103	-	lnc-ARC-1	lnc-ARC-1:6	ENSG00000234616.3	JRK	PSCA	NA	chr8:143751726-143754939	inner
CUST_31464_PI429285431	1.4046633	A	1.2279181	A	1.13033091734123	0	lncRNA	33231-1_{1..3000}	n337941|BC014162|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|326|NULL|-0.5379960|-0.2188259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337941|BC014162|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|326|NULL|-0.5379960|-0.2188259	chr1	 53771124	 53774123	-	NA	NA	NA	NA	LRP8	NA	chr1:53761124-53784157	inner
CUST_2026_PI429285431	5.402783	P	5.737529	P	0.792923725984561	0	lncRNA	2017-1_{1..879}	"transcript_id ""ENST00000513681.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513681.1"" | genecode_v17"	chr4	190580759	190581637	+	ENSG00000250739.1	ENST00000513681.1	RP11-462G22.1	RP11-462G22.1-001	NA	NA	NA	inter
CUST_13393_PI429285431	0.92024744	A	0.9237674	A	0.997563123665971	0	lncRNA	15030-1_{1..1608}	lnc-HEXB-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HEXB-1:7	chr5	 73635809	 73637416	+	lnc-HEXB-1	lnc-HEXB-1:7	XLOC_004429	linc-HEXB-1	NA	NA	NA	inter
CUST_15508_PI429285431	3.5034263	P	3.8300567	P	0.797396733210171	0	lncRNA	17197-1_{1..2695}	lnc-TAOK3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TAOK3-1:4	chr12	118573662	118576356	-	lnc-TAOK3-1	lnc-TAOK3-1:4	XLOC_010212	linc-VSIG10	PEBP1	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50chr12:118573870-118583390"	NA	inter
CUST_3333_PI429285431	0.91699517	A	1.5103307	A	0.662808711691132	0	lncRNA	3312-1_{1..774}	"transcript_id ""ENST00000521090.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521090.1"" | genecode_v17"	chr8	137793096	137793869	+	ENSG00000254101.1	ENST00000521090.1	RP11-30J20.1	RP11-30J20.1-004	NA	NA	NA	inter
CUST_1661_PI429285431	2.7095268	A	3.897112	P	0.439037111490684	0	lncRNA	1646-1_{1..764}	"transcript_id ""ENST00000593988.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593988.1"" | genecode_v17"	chr3	195435357	195436120	+	ENSG00000242086.3	ENST00000593988.1	AC069513.3	AC069513.3-020	MUC20	NA	chr3:195447753-195455881	inter
CUST_37835_PI429285431	7.3114953	P	7.3863106	P	0.949463667576356	0	lncRNA	38926-1_{1..713}	n346358|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1908|NULL|-1.6886400|-0.1362572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346358|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1908|NULL|-1.6886400|-0.1362572	chrX	114956652	114957364	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23211_PI429285431	5.152023	P	5.4720173	P	0.801073042574039	0	lncRNA	24783-1_{1..457}	lnc-FAM131B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM131B-1:1	chr7	142984136	142984592	-	lnc-FAM131B-1	lnc-FAM131B-1:1	ENSG00000231840.1	AC073342.12	CASP2	NA	chr7:142985308-142994473	inter
CUST_50087_PI429285431	0.9129289	A	0.9042549	A	1.00603046914984	0	lncRNA	53821-1_{1..2699}	hg19_lincRNAsTranscripts_TCONS_l2_00028400 range=chr8:126930983-126934790 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028400 range=chr8:126930983-126934790 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	126930983	126933681	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40"	NA	inter
CUST_30480_PI429285431	8.558291	P	8.37738	P	1.13359947875718	0	lncRNA	32260-1_{1..688}	n335629|CR603554|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000282749|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000282749|1.9073700|-0.4199681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335629|CR603554|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000282749|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000282749|1.9073700|-0.4199681	chr11	 93474852	 93475539	+	NA	NA	NA	NA	TAF1D	NA	chr11:93469095-93474703	inner
CUST_40211_PI429285431	3.1749537	A	3.676281	P	0.706456532034744	0	lncRNA	41038-2_{3001..4622}	n408039|NR_027822_3|lncRNA|Homosapiens||RefGeneNoncode|NR_027822_3||-1.0880100|-0.3191368	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408039|NR_027822_3|lncRNA|Homosapiens||RefGeneNoncode|NR_027822_3||-1.0880100|-0.3191368	chr6	  1560339	  1561960	+	NA	NA	NA	NA	NA	"hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-23.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70"	NA	inter
LNCA_21_P0009884	0.9528693	A	0.916597	A	1.02546076916819	0	lncRNA	ENST00000422574	NA	NA	NA	NA	XLOC_013663	NA	ENST00000422574	NA	NA	"BROAD Institute lincRNA (XLOC_013663), lincRNA [TCONS_00028009]"	chr20:16838678-16838619	hs|20p12.1	Agilent_HUMAN_G3V2	ENST00000422574	ENST00000422574	chr20	 16838619	 16838678	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2066_PI429285431	0.9013175	A	0.90305376	A	0.998797240172389	0	lncRNA	2057-1_{1..596}	"transcript_id ""ENST00000506093.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506093.1"" | genecode_v17"	chr5	  6766004	  6766599	+	ENSG00000251365.1	ENST00000506093.1	RP11-332J15.3	RP11-332J15.3-001	PAPD7	"hg19_refFlat_ZNF182:range=chrX:47835566-478479955'pad=0,hg19_refFlat_ZNF182:range=chrX:47835566-478479955'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20chr5:6756004-6757161"	NA	inter
CUST_23890_PI429285431	5.50135	P	5.8876476	P	0.765090545294815	0	lncRNA	25447-1_{1..872}	lnc-ANP32A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANP32A-1:1	chr15	 69335855	 69336726	-	lnc-ANP32A-1	lnc-ANP32A-1:1	ENSG00000259265.1	RP11-809H16.4	NOX5	NA	chr15:69325855-69345905	inter
CUST_47459_PI429285431	10.13161	P	9.927818	P	1.15172158136484	0	lncRNA	51487-2_{3001..3137}	"gi|373432686|ref|NR_028436.2| Homo sapiens ubiquitin-conjugating enzyme E2L 3 (UBE2L3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|373432686|ref|NR_028436.2| Homo sapiens ubiquitin-conjugating enzyme E2L 3 (UBE2L3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_028436.2	NA	NA	NA	NA	NA	Unknown
CUST_1712_PI429285431	2.8255394	P	3.6491992	P	0.56500682508592	0	lncRNA	1697-1_{1..546}	"transcript_id ""ENST00000503394.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503394.1"" | genecode_v17"	chr4	 23107125	 23107670	+	ENSG00000249645.1	ENST00000503394.1	RP11-552M14.1	RP11-552M14.1-001	NA	NA	NA	inter
CUST_22097_PI429285431	2.4453783	A	2.5521178	A	0.928684524941536	0	lncRNA	23702-1_{1..454}	lnc-PAX6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAX6-1:2	chr11	 31789183	 31789636	-	lnc-PAX6-1	lnc-PAX6-1:2	ENSG00000228061.1	Z83001.1	ELP4	NA	chr11:31779183-31799373	inner
CUST_17368_PI429285431	1.4264381	A	1.3604952	A	1.04676885140016	0	lncRNA	19088-1_{1..866}	lnc-FLRT2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FLRT2-2:4	chr14	 86595840	 86596705	+	lnc-FLRT2-2	lnc-FLRT2-2:4	XLOC_010891	linc-GPR65-6	NA	NA	NA	inter
CUST_35525_PI429285431	7.87895	P	7.5981364	P	1.2148798160916	0	lncRNA	36931-1_{1..2553}	n342631|AK023178|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5133|NULL|2.8478100|-0.2031593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342631|AK023178|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5133|NULL|2.8478100|-0.2031593	chr5	   470625	   473177	-	NA	NA	NA	NA	SLC9A3	NA	chr5:473334-483178	inter
CUST_10842_PI429285431	0.91924965	A	1.5920104	A	0.627305123070584	0	lncRNA	12378-1_{1..817}	lnc-B3GAT2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-B3GAT2-3:1	chr6	 72129769	 72130585	-	lnc-B3GAT2-3	lnc-B3GAT2-3:1	XLOC_005764	linc-B3GAT2-4	NA	NA	NA	inter
CUST_2791_PI429285431	1.1024811	A	0.9177049	A	1.13664063665841	0	lncRNA	2775-1_{1..588}	"transcript_id ""ENST00000436594.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436594.1"" | genecode_v17"	chr7	 28997283	 28997870	+	ENSG00000228421.2	ENST00000436594.1	AC005013.5	AC005013.5-001	TRIL	"hg19_refFlat_TRIL:range=chr7:28995227-289976625'pad=0,hg19_refFlat_TRIL:range=chr7:28995227-289976625'pad=0 3'pad=0 strand=- repeatMasking=none,-96.60chr7:28992974-28998029"	NA	inner
CUST_25113_PI429285431	0.9271231	A	0.9130362	A	1.00981212128294	0	lncRNA	26651-1_{1..508}	lnc-KIAA0087-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0087-2:1	chr7	 26416051	 26416558	-	lnc-KIAA0087-2	lnc-KIAA0087-2:1	ENSG00000225792.1	AC004540.4	SNX10	"hg19_refFlat_SNX10:range=chr7:26400580-264121925'pad=0,hg19_refFlat_SNX10:range=chr7:26400580-264121925'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SNX10:range=chr7:26404707-264121925'pad=0,hg19_refFlat_SNX10:range=chr7:26404707-264121925'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SNX10:range=chr7:26386063-264121925'pad=0,hg19_refFlat_SNX10:range=chr7:26386063-264121925'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00chr7:26406051-26413949"	NA	inter
CUST_1275_PI429285431	8.294491	P	8.155347	P	1.10125151204326	0	lncRNA	1267-1_{1..3000}	"transcript_id ""ENST00000455228.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000455228.1"" | genecode_v17"	chr2	239840998	239843997	-	ENSG00000227744.4	ENST00000455228.1	AC114788.2	AC114788.2-001	NA	NA	NA	inter
CUST_23742_PI429285431	0.8928939	A	0.89083195	A	1.00143025667181	0	lncRNA	25305-1_{1..514}	lnc-RMND5A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RMND5A-1:1	chr2	 86844299	 86844812	+	lnc-RMND5A-1	lnc-RMND5A-1:1	ENSG00000228363.1	AC015971.2	RNF103-VPS24	NA	chr2:86834299-86854564	inner
CUST_24382_PI429285431	2.7327983	A	3.7497218	P	0.494169028743621	0	lncRNA	25935-1_{1..545}	lnc-ADAM19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAM19-1:1	chr5	156811630	156812174	-	lnc-ADAM19-1	lnc-ADAM19-1:1	ENSG00000248544.2	CTB-47B11.3	CYFIP2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60chr5:156801630-156821958"	NA	inner
CUST_9083_PI429285431	0.9166711	A	0.8994244	A	1.01202624212129	0	lncRNA	10604-1_{1..2012}	lnc-BHLHB9-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BHLHB9-1:5	chrX	102119970	102121981	+	lnc-BHLHB9-1	lnc-BHLHB9-1:5	ENSG00000223546	LL0XNC01-157D4.1	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90"	NA	inter
LNCA_21_P0001355	0.92598134	A	0.90966314	A	1.01137512457708	0	lncRNA	TCONS_00001080	NA	NA	NA	NA	XLOC_000318	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000318), lincRNA [TCONS_00001080]"	chr1:101629727-101641108	hs|1p21.2	Agilent_HUMAN_G3V2	TCONS_00001080	TCONS_00001080	chr1	101629727	101641108	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43951_PI429285431	5.9878826	P	5.1593204	P	1.77591459115648	0	lncRNA	48660-2_{3001..3325}	"gi|386869391|ref|NR_048559.1| Homo sapiens translin (TSN), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386869391|ref|NR_048559.1| Homo sapiens translin (TSN), transcript variant 6, non-coding RNA"	Chr2	122516121	122516445	+	7247	NR_048559.1	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30"	NA	inter
CUST_12009_PI429285431	5.7680173	P	5.859887	P	0.938305937724039	0	lncRNA	13590-1_{1..221}	lnc-DEFB116-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DEFB116-1:3	chr20	 29565784	 29566004	-	lnc-DEFB116-1	lnc-DEFB116-1:3	XLOC_013717	linc-ZNF337-4	NA	NA	NA	inter
CUST_8522_PI429285431	6.4726596	P	6.8817816	P	0.753081547069332	0	lncRNA	10083-1_{1..594}	lnc-JAM3-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-JAM3-3:6	chr11	133916656	133917249	+	lnc-JAM3-3	lnc-JAM3-3:6	ENSG00000204241	RP11-713P17.3	NA	NA	NA	inter
CUST_20324_PI429285431	0.9725418	A	0.9537411	A	1.01311693422966	0	lncRNA	21967-1_{1..893}	lnc-EFCAB5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EFCAB5-1:1	chr17	 28193057	 28193949	+	lnc-EFCAB5-1	lnc-EFCAB5-1:1	ENSG00000263477.1	RP11-338L22.2	SSH2	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-62.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr17:28183057-28203110"	NA	inner
CUST_19793_PI429285431	3.0941446	P	3.1120198	A	0.987686297324152	0	lncRNA	21451-1_{1..414}	lnc-C1orf177-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C1orf177-2:3	chr1	 55354173	 55354586	+	lnc-C1orf177-2	lnc-C1orf177-2:3	ENSG00000233203.2	RP11-67L3.4	DHCR24	NA	chr1:55344173-55352921	inter
CUST_1415_PI429285431	0.91313267	A	1.34853	A	0.739490064971835	0	lncRNA	1404-1_{1..866}	"transcript_id ""ENST00000597154.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597154.1"" | genecode_v17"	chr3	107036828	107037693	-	ENSG00000239828.2	ENST00000597154.1	RP11-446H18.5	RP11-446H18.5-003	CCDC54	NA	chr3:107046680-107051591	inter
CUST_2661_PI429285431	5.2579722	P	3.6091814	P	3.13570708576919	0	lncRNA	2647-1_{1..1477}	"transcript_id ""ENST00000443556.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443556.1"" | genecode_v17"	chr6	147708800	147710276	+	ENSG00000225135.1	ENST00000443556.1	RP11-361F15.2	RP11-361F15.2-001	STXBP5	NA	chr6:147698800-147711612	inner
CUST_21489_PI429285431	0.9094395	A	0.9105147	A	0.999255005797548	0	lncRNA	23107-1_{1..492}	lnc-INPPL1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-INPPL1-4:1	chr11	 72122792	 72123283	+	lnc-INPPL1-4	lnc-INPPL1-4:1	ENSG00000256403.1	RP11-7N14.1	CLPB	NA	chr11:72112792-72133123	inner
CUST_24100_PI429285431	0.90849394	A	1.4814755	A	0.672226089169246	0	lncRNA	25651-1_{1..718}	lnc-ZC3H14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZC3H14-1:1	chr14	 89018343	 89019060	+	lnc-ZC3H14-1	lnc-ZC3H14-1:1	ENSG00000258789.1	RP11-507K2.3	PTPN21	NA	chr14:89008343-89021123	inner
CUST_20690_PI429285431	0.9217993	A	0.904098	A	1.0123451866029	0	lncRNA	22326-1_{1..546}	lnc-STC1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STC1-2:2	chr8	 24406053	 24406598	-	lnc-STC1-2	lnc-STC1-2:2	ENSG00000253535.1	RP11-624C23.1	NA	NA	NA	inter
CUST_3451_PI429285431	0.9225993	A	1.0466702	A	0.917594786801113	0	lncRNA	3422-1_{1..557}	"transcript_id ""ENST00000585454.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585454.1"" | genecode_v17"	chr9	 84888374	 84888930	+	ENSG00000228430.4	ENST00000585454.1	RP11-15B24.5	RP11-15B24.5-013	NA	NA	NA	inter
CUST_11276_PI429285431	0.89965594	A	1.1969088	A	0.813800538403884	0	lncRNA	12836-1_{1..1809}	lnc-SUPT3H-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUPT3H-1:3	chr6	 45544016	 45545824	-	lnc-SUPT3H-1	lnc-SUPT3H-1:3	XLOC_005737	linc-SUPT3H	NA	NA	NA	inter
CUST_40748_PI429285431	5.4383035	P	4.988588	P	1.36577089966594	0	lncRNA	41476-1_{1..1787}	n410458|NR_037601|lncRNA|Homosapiens||RefGeneNoncode|NR_037601||-0.9136350|-0.3845958	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410458|NR_037601|lncRNA|Homosapiens||RefGeneNoncode|NR_037601||-0.9136350|-0.3845958	chr15	 93426072	 93427858	+	NA	NA	NA	NA	CHD2	NA	chr15:93443551-93451977	inter
CUST_29165_PI429285431	9.891345	P	9.825632	P	1.04660205732475	0	lncRNA	30908-1_{1..1054}	n326676|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007795|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007795|-0.3549620|-0.2961560	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326676|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007795|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007795|-0.3549620|-0.2961560	chr1	 22224613	 22225666	+	NA	NA	NA	NA	HSPG2	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.73;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80chr1:22214613-22240303"	NA	inner
LNCA_32_P110016	3.0985422	P	3.2062204	P	0.928080466153555	0	lncRNA	XR_111211	XR_111211	XR_111211	   727869	Hs.647210	LOC727869	uncharacterized LOC727869	ENST00000528717	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC727869 (LOC727869), miscRNA [XR_111211]"	chr11:102332394-102332453	hs|11q22.2	Agilent_HUMAN_G3V2	XR_111211	XR_111211	chr11	102332394	102332453	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50093_PI429285431	4.403659	P	4.500752	P	0.934914928679764	0	lncRNA	53826-1_{1..1623}	hg19_lincRNAsTranscripts_TCONS_l2_00028011 range=chr8:144161722-144164901 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028011 range=chr8:144161722-144164901 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	144161722	144163344	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39251_PI429285431	7.879156	P	8.456053	P	0.670404157023022	0	lncRNA	40222-1_{1..2377}	n386119|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010blv.2||1.1537500|-0.0792890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386119|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010blv.2||1.1537500|-0.0792890	chr15	 82764078	 82766454	-	NA	NA	NA	NA	NA	"hg19_refFlat_DNM1:range=chr9:130965750-1310154015'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310154015'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
CUST_35907_PI429285431	1.2164294	A	0.9687615	A	1.18728632821306	0	lncRNA	37280-1_{1..1413}	n344555|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_103|NULL|-1.4582300|-0.4138457	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344555|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_103|NULL|-1.4582300|-0.4138457	chr13	 80144653	 80146065	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45406_PI429285431	4.4389086	P	5.235383	P	0.575754465265537	0	lncRNA	49833-2_{3001..3413}	"gi|193290111|ref|NR_024011.1| Homo sapiens FP944 (LOC286367), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|193290111|ref|NR_024011.1| Homo sapiens FP944 (LOC286367), non-coding RNA"	Chr9	107539633	107540045	+	286367	NR_024011.1	NA	NA	NA	NA	NA	inter
CUST_5866_PI429285431	2.6359854	A	2.9463825	A	0.806419762643454	0	lncRNA	5795-1_{1..2025}	"transcript_id ""ENST00000589259.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589259.1"" | genecode_v17"	chr17	 42723732	 42725756	-	ENSG00000266979.1	ENST00000589259.1	RP11-1072C15.2	RP11-1072C15.2-001	C17orf104	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.62chr17:42733762-42737717"	NA	inter
LNCA_21_P0005827	1.3511118	A	2.5247903	A	0.443289624273679	0	lncRNA	TCONS_00014990	NA	NA	NA	NA	XLOC_007069	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007069), lincRNA [TCONS_00014990]"	chr8:41998665-41998473	hs|8p11.21	Agilent_HUMAN_G3V2	TCONS_00014990	TCONS_00014990	chr8	 41998473	 41998665	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7621_PI429285431	0.93354607	A	0.919472	A	1.00980314098458	0	lncRNA	9253-2_{3001..3084}	lnc-FAM78A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM78A-1:1	chr9	134072287	134072370	-	lnc-FAM78A-1	lnc-FAM78A-1:1	ENSG00000246851	ENSG00000246851.1	NUP214	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NUP214:range=chr9:134001092-1341088745'pad=0,hg19_refFlat_NUP214:range=chr9:134001092-1341088745'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr9:134059287-134079592"	NA	inner
CUST_30241_PI429285431	9.634206	P	9.85212	P	0.859807738420039	0	lncRNA	32016-1_{1..529}	n335111|AL365368|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250522|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250522|2.0814100|-0.1930856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335111|AL365368|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250522|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250522|2.0814100|-0.1930856	chrX	153672593	153673121	+	NA	NA	NA	NA	PLXNA3	NA	chrX:153686623-153686933	inner
CUST_21950_PI429285431	2.4865377	A	2.5932822	A	0.928681306371813	0	lncRNA	23558-1_{1..990}	lnc-XPO5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XPO5-1:1	chr6	 43558627	 43559616	-	lnc-XPO5-1	lnc-XPO5-1:1	ENSG00000203362.2	RP3-337H4.8	POLH	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50chr6:43548627-43569099"	NA	inner
CUST_17272_PI429285431	3.8569303	P	2.7842422	A	2.1033487807963	0	lncRNA	18990-1_{1..805}	lnc-TSN-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSN-6:1	chr2	123229178	123229982	+	lnc-TSN-6	lnc-TSN-6:1	XLOC_001649	linc-CNTNAP5-7	NA	NA	NA	inter
CUST_31709_PI429285431	0.91898006	A	0.91154844	A	1.00516449672445	0	lncRNA	33452-1_{1..1197}	n338238|BC031811|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|630|NULL|-0.2892940|-0.2590889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338238|BC031811|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|630|NULL|-0.2892940|-0.2590889	chr1	152784446	152785642	+	NA	NA	NA	NA	LCE1B	NA	chr1:152784447-152785585	inner
CUST_38383_PI429285431	5.632456	P	5.8713603	P	0.847388643917034	0	lncRNA	39422-1_{1..2012}	n382286|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yrr.2||-0.2475810|-0.1548400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382286|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yrr.2||-0.2475810|-0.1548400	chr14	105998191	106000202	+	NA	NA	NA	NA	TMEM121	NA	chr14:105992953-105996539	inter
LNCA_21_P0003060	0.93010503	A	0.9213022	A	1.0061203098221	0	lncRNA	TCONS_00006311	NA	NA	NA	NA	XLOC_002925	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002925), lincRNA [TCONS_00006311]"	chr3:174176469-174176528	hs|3q26.31	Agilent_HUMAN_G3V2	TCONS_00006311	TCONS_00006311	chr3	174176469	174176528	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38562_PI429285431	5.1895466	P	5.001714	P	1.13905120221029	0	lncRNA	39573-1_{1..1558}	n383497|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002odt.1||-0.0944872|-0.1726317	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n383497|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002odt.1||-0.0944872|-0.1726317	chr19	 36803968	 36805525	-	NA	NA	NA	NA	ZFP14	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70chr19:36825355-36832610"	NA	inter
LNCA_21_P0007539	0.9316145	A	0.92265046	A	1.00623274225792	0	lncRNA	TCONS_00020373	NA	NA	NA	NA	XLOC_009705	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009705), lincRNA [TCONS_00020373]"	chr12:32803661-32810770	hs|12p11.21	Agilent_HUMAN_G3V2	TCONS_00020373	TCONS_00020373	chr12	 32803661	 32810770	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4050_PI429285431	0.9541859	A	0.9252088	A	1.02028846400927	0	lncRNA	4012-1_{1..266}	"transcript_id ""ENST00000532770.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532770.1"" | genecode_v17"	chr11	 92698963	 92699228	+	ENSG00000254874.1	ENST00000532770.1	RP11-676F20.1	RP11-676F20.1-001	MTNR1B	NA	chr11:92702789-92709769	inter
CUST_35314_PI429285431	1.1123604	A	0.90088946	A	1.15786811904641	0	lncRNA	36718-1_{1..977}	n342339|AX721191|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4831|NULL|-0.4981760|-0.2433825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342339|AX721191|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4831|NULL|-0.4981760|-0.2433825	chr14	 92511118	 92512094	-	NA	NA	NA	NA	ATXN3	NA	chr14:92524896-92534875	inter
CUST_20388_PI429285431	11.638535	P	11.752959	P	0.923751047284913	0	lncRNA	22030-1_{1..419}	lnc-SRCIN1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRCIN1-1:9	chr17	 36607870	 36608288	-	lnc-SRCIN1-1	lnc-SRCIN1-1:9	ENSG00000260833.2	AC124789.1	ARHGAP23	"hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20chr17:36597870-36618190"	NA	inner
CUST_29760_PI429285431	5.9766045	P	7.278818	P	0.405503564123272	0	lncRNA	31522-1_{1..1731}	n333447|BC019839|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000089966|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000089966|5.5515000|-0.0692706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333447|BC019839|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000089966|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000089966|5.5515000|-0.0692706	chr22	 41625500	 41627230	-	NA	NA	NA	NA	RANGAP1	"hg19_refFlat_L3MBTL2:range=chr22:41601367-416262555'pad=0,hg19_refFlat_L3MBTL2:range=chr22:41601367-416262555'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00chr22:41641615-41644313"	NA	inner
CUST_15211_PI429285431	1.2896137	A	3.1256773	A	0.280084955966176	0	lncRNA	16881-1_{1..545}	lnc-USP28-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP28-2:1	chr11	113888586	113889130	-	lnc-USP28-2	lnc-USP28-2:1	XLOC_009558	linc-USP28-2	NA	NA	NA	inter
LNCA_21_P0008730	1.4077337	A	2.4035082	A	0.501466593405188	0	lncRNA	TCONS_00023647	NA	NA	NA	NA	XLOC_011447	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011447), lincRNA [TCONS_00023647]"	chr15:41455433-41455374	hs|15q15.1	Agilent_HUMAN_G3V2	TCONS_00023647	TCONS_00023647	chr15	 41455374	 41455433	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13807_PI429285431	2.400951	A	2.684736	A	0.821433107050006	0	lncRNA	15449-1_{1..1139}	lnc-PRR25-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRR25-1:1	chr16	   900557	   901695	+	lnc-PRR25-1	lnc-PRR25-1:1	XLOC_011620	linc-SOX8	LMF1	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30chr16:903634-910609"	NA	inter
LNCA_21_P0014267	2.6420841	A	2.8270497	A	0.879670050756423	0	lncRNA	ENST00000415865	XR_109052	XR_109052	NA	Hs.535341	LOC100505570	NA	ENST00000415865	THC2618231	NA	"PREDICTED: Homo sapiens hypothetical LOC100505570 (LOC100505570), miscRNA [XR_109052]"	chr11:1683873-1683814	hs|11p15.5	Agilent_HUMAN_G3V2	ENST00000415865	ENST00000415865	chr11	  1683814	  1683873	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32724_PI429285431	7.1956115	P	7.3240347	P	0.914830772409037	0	lncRNA	34365-1_{1..1709}	n339353|BC002903|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1785|NULL|-0.9557470|-0.1318789	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339353|BC002903|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1785|NULL|-0.9557470|-0.1318789	chr3	 48505604	 48507312	-	NA	NA	NA	NA	ATRIP	"hg19_refFlat_ATRIP:range=chr3:48491475-485069535'pad=0,hg19_refFlat_ATRIP:range=chr3:48491475-485069535'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_ATRIP:range=chr3:48493135-485069535'pad=0,hg19_refFlat_ATRIP:range=chr3:48493135-485069535'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_ATRIP:range=chr3:48488250-485069535'pad=0,hg19_refFlat_ATRIP:range=chr3:48488250-485069535'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20chr3:48495604-48507054"	NA	inner
CUST_38401_PI429285431	13.376502	P	13.614459	P	0.847945237543091	0	lncRNA	39436-1_{1..3000}	n382339|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yxn.3||-0.8301960|-0.2574107	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n382339|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yxn.3||-0.8301960|-0.2574107	chr15	 25304603	 25307602	+	NA	NA	NA	NA	SNRPN	NA	chr15:25294603-25377621	inter
CUST_10586_PI429285431	4.516778	P	4.5866866	P	0.952698353052271	0	lncRNA	12116-1_{1..2343}	lnc-GNG2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNG2-1:3	chr14	 52291703	 52294045	+	lnc-GNG2-1	lnc-GNG2-1:3	XLOC_010828	linc-GNG2	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50"	NA	inter
LNCA_21_P0001729	0.9935026	A	0.95232815	A	1.02895112065288	0	lncRNA	THC2656487	NA	NA	NA	NA	XLOC_000832	NA	NA	THC2656487	NA	"BROAD Institute lincRNA (XLOC_000832), lincRNA [TCONS_00001493]"	chr1:050783069-050783010	hs|1p32.3	Agilent_HUMAN_G3V2	THC2656487	THC2656487	chr1	 50783010	 50783069	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22749_PI429285431	1.3545994	A	1.9766932	A	0.649727286401892	0	lncRNA	24332-1_{1..254}	lnc-GNS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNS-2:1	chr12	 65003125	 65003378	-	lnc-GNS-2	lnc-GNS-2:1	ENSG00000256670.1	RP11-338E21.1	RASSF3	NA	chr12:65004293-65013239	inter
CUST_22834_PI429285431	0.91798824	A	0.9103615	A	1.00530045127789	0	lncRNA	24414-1_{1..3000}	lnc-SEC16B.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC16B.1-5:1	chr1	178331256	178334255	-	lnc-SEC16B.1-5	lnc-SEC16B.1-5:1	ENSG00000226585.1	RP4-765C7.1	RASAL2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70chr1:178321256-178343230"	NA	inner
CUST_45554_PI429285431	1.3136632	A	0.9191131	A	1.31453276329134	0	lncRNA	49953-1_{1..2967}	"gi|336594997|ref|NR_038932.1| Homo sapiens uncharacterized LOC100505583 (LOC100505583), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|336594997|ref|NR_038932.1| Homo sapiens uncharacterized LOC100505583 (LOC100505583), non-coding RNA"	Chr10	 34048641	 34051607	-	100505583	NR_038932.1	NA	NA	NA	NA	NA	inter
CUST_22490_PI429285431	2.6963534	A	2.673821	A	1.01574087215148	0	lncRNA	24077-1_{1..992}	lnc-PLAT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLAT-1:1	chr8	 42009290	 42010281	-	lnc-PLAT-1	lnc-PLAT-1:1	ENSG00000261449.1	RP11-589C21.5	AP3M2	NA	chr8:41999290-42020281	inter
CUST_48093_PI429285431	6.194189	P	6.7456155	P	0.682345109299132	0	lncRNA	51969-1_{1..1053}	"gi|410170151|ref|XR_172475.1| PREDICTED: Homo sapiens DNA primase large subunit-like (LOC100996481), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170151|ref|XR_172475.1| PREDICTED: Homo sapiens DNA primase large subunit-like (LOC100996481), misc_RNA"	NA	NA	NA	NA	NA	XR_172475.1	NA	NA	NA	NA	NA	Unknown
CUST_12312_PI429285431	0.92260146	A	0.9188389	A	1.00261141166659	0	lncRNA	13926-1_{1..1498}	lnc-IRX3-4:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRX3-4:17	chr16	 54962406	 54963903	-	lnc-IRX3-4	lnc-IRX3-4:17	XLOC_011950	linc-IRX3-5	IRX5	NA	chr16:54965111-54968397	inter
CUST_3702_PI429285431	5.456233	P	5.340684	P	1.08338723689173	0	lncRNA	3670-1_{1..286}	"transcript_id ""ENST00000602051.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602051.1"" | genecode_v17"	chr10	 61496956	 61497241	-	ENSG00000227877.2	ENST00000602051.1	RP11-59J5.1	RP11-59J5.1-005	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
CUST_3851_PI429285431	0.92976683	A	0.96267843	A	0.977445656787101	0	lncRNA	3820-1_{1..869}	"transcript_id ""ENST00000428160.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000428160.1"" | genecode_v17"	chr11	  5127292	  5128160	-	ENSG00000236897.1	ENST00000428160.1	AC113331.9	AC113331.9-001	NA	NA	NA	inter
CUST_461_PI429285431	9.469116	P	9.702608	P	0.850573610271591	0	lncRNA	452-2_{3001..4120}	"transcript_id ""ENST00000441272.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441272.1"" | genecode_v17"	chr1	156660489	156661608	-	ENSG00000237588.1	ENST00000441272.1	RP11-66D17.3	RP11-66D17.3-001	CRABP2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-60.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.54;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20chr1:156669398-156671789"	NA	inter
CUST_46134_PI429285431	1.3158898	A	2.0835037	A	0.587388163817756	0	lncRNA	50389-1_{1..3000}	"gi|300068994|ref|NR_033950.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|300068994|ref|NR_033950.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_033950.1	NA	NA	NA	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	Unknown
CUST_10880_PI429285431	0.9188221	A	0.91324186	A	1.00387541770882	0	lncRNA	12420-1_{1..553}	lnc-MEIS1-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MEIS1-3:6	chr2	 66942527	 66943079	+	lnc-MEIS1-3	lnc-MEIS1-3:6	XLOC_001508	linc-ETAA1-6	NA	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40"	NA	inter
CUST_45723_PI429285431	3.6870089	P	4.0119414	P	0.798335737564039	0	lncRNA	50085-6_{15001..18000}	"gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	Chr11	  2644558	  2647557	-	10984	NR_002728.3	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.02;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0,hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_32625_PI429285431	1.8389995	A	2.0266948	A	0.878007214860895	0	lncRNA	34284-1_{1..1936}	n339249|AK094210|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1681|NULL|-0.9249210|-0.2387337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339249|AK094210|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1681|NULL|-0.9249210|-0.2387337	chr3	 12190146	 12192081	-	NA	NA	NA	NA	SYN2	NA	chr3:12180146-12202082	inner
CUST_46059_PI429285431	10.911249	P	10.961245	P	0.96593900707273	0	lncRNA	50334-1_{1..517}	"gi|315113897|ref|NR_037655.1| Homo sapiens biogenesis of lysosomal organelles complex-1, subunit 1 (BLOC1S1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315113897|ref|NR_037655.1| Homo sapiens biogenesis of lysosomal organelles complex-1, subunit 1 (BLOC1S1), transcript variant 2, non-coding RNA"	Chr12	 56109818	 56110334	+	2647	NR_037655.1	NA	NA	NA	NA	NA	inter
CUST_20378_PI429285431	3.9818487	P	3.3694334	P	1.52881654871182	0	lncRNA	22020-1_{1..630}	lnc-C2orf42-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:9	chr2	 70314413	 70315042	-	lnc-C2orf42-3	lnc-C2orf42-3:9	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_34199_PI429285431	1.012434	A	1.208472	A	0.87294459782565	0	lncRNA	35714-1_{1..627}	n341054|AF147342|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3520|NULL|-1.0495200|-0.1647565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341054|AF147342|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3520|NULL|-1.0495200|-0.1647565	chr11	 67059466	 67060092	-	NA	NA	NA	NA	ADRBK1	"hg19_refFlat_ANKRD13D:range=chr11:67056932-670698035'pad=0,hg19_refFlat_ANKRD13D:range=chr11:67056932-670698035'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.50chr11:67049466-67054029"	NA	inter
CUST_45465_PI429285431	12.238005	P	12.056902	P	1.13375035304271	0	lncRNA	49880-1_{1..869}	"gi|215422348|ref|NR_024543.1| Homo sapiens small nucleolar RNA host gene 7 (non-protein coding) (SNHG7), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|215422348|ref|NR_024543.1| Homo sapiens small nucleolar RNA host gene 7 (non-protein coding) (SNHG7), transcript variant 3, non-coding RNA"	Chr9	139619046	139619914	-	84973	NR_024543.1	NA	NA	NA	NA	NA	inter
CUST_48170_PI429285431	6.8898335	P	7.073501	P	0.880461911503603	0	lncRNA	52035-2_{3001..3219}	"gi|397137828|ref|XR_159298.1| PREDICTED: Homo sapiens FLJ46026 protein (FLJ46026), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397137828|ref|XR_159298.1| PREDICTED: Homo sapiens FLJ46026 protein (FLJ46026), misc_RNA"	NA	NA	NA	NA	NA	XR_159298.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00"	NA	Unknown
CUST_30602_PI429285431	0.95033956	A	1.4456143	A	0.709426565405619	0	lncRNA	32384-1_{1..396}	n335917|X65894|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322779|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322779|3.1282200|-0.0645154	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335917|X65894|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322779|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322779|3.1282200|-0.0645154	chr14	106329408	106329803	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46341_PI429285431	2.3351188	A	2.175611	A	1.11690602153985	0	lncRNA	50566-1_{1..2026}	"gi|210147561|ref|NR_024334.1| Homo sapiens FUT8 antisense RNA 1 (FUT8-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|210147561|ref|NR_024334.1| Homo sapiens FUT8 antisense RNA 1 (FUT8-AS1), non-coding RNA"	Chr14	 65877310	 65879335	-	645431	NR_024334.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0012063	2.6745307	A	2.6564598	A	1.0126045697035	0	lncRNA	ENST00000414796	NA	NA	NA	NA	XLOC_l2_007964	NA	ENST00000414796	THC2701671	NA	"BROAD Institute lincRNA (XLOC_l2_007964), lincRNA [TCONS_l2_00015761]"	chr2:35223420-35223361	hs|2p22.3	Agilent_HUMAN_G3V2	ENST00000414796	ENST00000414796	chr2	 35223361	 35223420	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21682_PI429285431	4.1160684	P	4.8278933	P	0.610547354013754	0	lncRNA	23292-1_{1..671}	lnc-ASTE1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASTE1-1:2	chr3	130791074	130791744	-	lnc-ASTE1-1	lnc-ASTE1-1:2	ENSG00000250129.1	RP11-265F19.1	NEK11	NA	chr3:130781074-130801179	inner
CUST_30223_PI429285431	1.2546303	A	1.4987366	A	0.844338672953607	0	lncRNA	31998-1_{1..220}	n335080|AJ616795|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249237|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249237|1.1079900|-0.2843298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335080|AJ616795|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249237|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249237|1.1079900|-0.2843298	chr6	135511265	135511484	+	NA	NA	NA	NA	MYB	NA	chr6:135502453-135521485	inner
CUST_43101_PI429285431	6.976915	P	7.10709	P	0.913720608505813	0	lncRNA	47684-1_{1..104}	ENST00000516226 ncrna:snRNA chromosome:GRCh37:8:14345285:14345388:-1 gene:ENSG00000252035 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516226 ncrna:snRNA chromosome:GRCh37:8:14345285:14345388:-1 gene:ENSG00000252035 gene_biotype:snRNA transcript_biotype:snRNA	chr8	 14345285	 14345388	-	ENSG00000252035	ENST00000516226	NA	NA	SGCZ	NA	chr8:14335285-14355388	inner
CUST_4180_PI429285431	3.706053	P	3.6590405	P	1.03312333897697	0	lncRNA	4139-1_{1..565}	"transcript_id ""ENST00000413794.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413794.2"" | genecode_v17"	chr12	 22852793	 22853357	+	ENSG00000256995.2	ENST00000413794.2	RP11-114G22.1	RP11-114G22.1-001	ETNK1	NA	chr12:22842793-22843608	inter
CUST_2_PI429201921	8.581478	P	8.1238985	P	1.37323592023117	0	lncRNA	2-1_{1....	TC6_qbl_hap6000205.hg.1	TCONS_00029991-XLOC_014476 // Rinn lincRNAs // linc-ZIC1-6 chr6_qbl_hap6:-:1019444-1019786 // chr6_qbl_hap6 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6_qbl_hap6:-:1019444-1019786	NA	Affy_HUMAN_HTA2.0	TCONS_00029991-XLOC_014476	linc-ZIC1-6	chr6_qbl_hap6	  1019444	  1019786	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004271	4.364423	P	3.311901	P	2.07415254202517	0	lncRNA	ENST00000508366	XR_108587	XR_108587	NA	Hs.364045	ATP6AP1L	"ATPase, H+ transporting, lysosomal accessory protein 1-like"	ENST00000508366	THC2481900	GO:0016020|GO:0046961|GO:0046933|GO:0015991|GO:0033180|GO:0016021	"PREDICTED: Homo sapiens hypothetical LOC645079 (FLJ41309), miscRNA [XR_108587]"	chr5:81681740-81681799	hs|5q14.2	Agilent_HUMAN_G3V2	ENST00000508366	ENST00000508366	chr5	 81681740	 81681799	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4848_PI429285431	0.9229731	A	0.90537536	A	1.01227252072282	0	lncRNA	4791-1_{1..573}	"transcript_id ""ENST00000556936.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556936.1"" | genecode_v17"	chr14	 60007401	 60007973	-	ENSG00000258607.1	ENST00000556936.1	RP11-701B16.3	RP11-701B16.3-001	C14orf38	NA	chr14:59997401-60041172	inner
CUST_42976_PI429285431	4.2927	P	4.6930094	P	0.757695770593419	0	lncRNA	46121-1_{1..80}	ENST00000364129 ncrna:snoRNA chromosome:GRCh37:4:26703931:26704010:1 gene:ENSG00000200999 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364129 ncrna:snoRNA chromosome:GRCh37:4:26703931:26704010:1 gene:ENSG00000200999 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	 26703931	 26704010	+	ENSG00000200999	ENST00000364129	NA	NA	TBC1D19	NA	chr4:26693931-26714010	inner
CUST_5396_PI429285431	4.924662	P	4.8409724	P	1.05972475602939	0	lncRNA	5330-1_{1..504}	"transcript_id ""ENST00000567515.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567515.1"" | genecode_v17"	chr16	  2047655	  2048158	+	ENSG00000260107.1	ENST00000567515.1	AC005606.15	AC005606.15-001	ZNF598	"hg19_refFlat_ZNF598:range=chr16:2048233-20597485'pad=0,hg19_refFlat_ZNF598:range=chr16:2048233-20597485'pad=0 3'pad=0 strand=- repeatMasking=none,-101.80chr16:2047768-2058375"	NA	inner
CUST_14100_PI429285431	2.7312028	A	3.6348512	P	0.534533251124459	0	lncRNA	15746-1_{1..2798}	lnc-SIK1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIK1-5:2	chr21	 44780772	 44783569	-	lnc-SIK1-5	lnc-SIK1-5:2	XLOC_014102	linc-U2AF1-2	NA	NA	NA	inter
LNCA_21_P0013790	1.074438	A	0.927256	A	1.10740427780858	0	lncRNA	TCONS_l2_00030329	NA	NA	NA	NA	XLOC_l2_015596	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015596), lincRNA [TCONS_l2_00030329]"	chrX:108812175-108812302	hs|Xq23	Agilent_HUMAN_G3V2	TCONS_l2_00030329	TCONS_l2_00030329	chrX	108812175	108812302	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46200_PI429285431	7.019817	P	7.1518817	P	0.912524563981077	0	lncRNA	50444-1_{1..3000}	"gi|213688419|ref|NR_024506.1| Homo sapiens long intergenic non-protein coding RNA 598 (LINC00598), transcript variant TTL-B1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|213688419|ref|NR_024506.1| Homo sapiens long intergenic non-protein coding RNA 598 (LINC00598), transcript variant TTL-B1, non-coding RNA"	Chr13	 40921269	 40924268	-	646982	NR_024506.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60"	NA	inter
LNCA_21_P0008893	0.9835137	A	0.9268235	A	1.04007689955069	0	lncRNA	BC033994	NA	BC033994	NA	Hs.551700	XLOC_011800	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011800), lincRNA [TCONS_00024295]"	chr16:81112334-81112393	hs|16q23.2	Agilent_HUMAN_G3V2	BC033994	BC033994	chr16	 81112334	 81112393	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22511_PI429285431	5.6526017	P	4.5606575	P	2.13161102491587	0	lncRNA	24098-1_{1..1275}	lnc-BHMT2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BHMT2-1:5	chr5	 77771327	 77772601	+	lnc-BHMT2-1	lnc-BHMT2-1:5	ENSG00000085365.12	SCAMP1	LHFPL2	NA	chr5:77781038-77781849	inner
CUST_40271_PI429285431	0.90297467	A	1.6180823	A	0.609159684739827	0	lncRNA	41081-1_{1..1286}	n408214|NR_028366|lncRNA|Homosapiens||RefGeneNoncode|NR_028366||4.2085000|-0.1579664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408214|NR_028366|lncRNA|Homosapiens||RefGeneNoncode|NR_028366||4.2085000|-0.1579664	chrX	 47967366	 47968651	+	NA	NA	NA	NA	LOC100509575	NA	chrX:47967377-47973694	inter
CUST_28920_PI429285431	3.142817	P	2.9801846	P	1.11932764662007	0	lncRNA	30637-1_{1..856}	n326345|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000083237|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000083237|-1.2878100|-0.4333032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326345|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000083237|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000083237|-1.2878100|-0.4333032	chr1	165412207	165413062	-	NA	NA	NA	NA	RXRG	NA	chr1:165402207-165414592	inter
CUST_2428_PI429285431	12.0694895	P	12.245768	P	0.884982909669714	0	lncRNA	2420-1_{1..753}	"transcript_id ""ENST00000519400.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519400.1"" | genecode_v17"	chr5	172890503	172891255	+	ENSG00000253141.1	ENST00000519400.1	CTB-164N12.1	CTB-164N12.1-002	NA	NA	NA	inter
CUST_5957_PI429285431	1.122494	A	1.0451471	A	1.05507598249833	0	lncRNA	5886-1_{1..323}	"transcript_id ""ENST00000543512.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000543512.1"" | genecode_v17"	chr17	 70017992	 70018314	-	ENSG00000228639.2	ENST00000543512.1	AC005152.3	AC005152.3-002	NA	NA	NA	inter
CUST_20762_PI429285431	0.91498065	A	1.4925689	A	0.670083017864832	0	lncRNA	22395-1_{1..567}	lnc-IMPACT-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IMPACT-2:1	chr18	 21947467	 21948033	+	lnc-IMPACT-2	lnc-IMPACT-2:1	ENSG00000264365.1	RP11-621L6.2	OSBPL1A	"hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40chr18:21937467-21957948"	NA	inner
CUST_4399_PI429285431	2.2414675	A	2.396685	A	0.897996981091948	0	lncRNA	4349-1_{1..2503}	"transcript_id ""ENST00000548557.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548557.1"" | genecode_v17"	chr12	106097981	106100483	+	ENSG00000257859.1	ENST00000548557.1	RP11-266E14.1	RP11-266E14.1-001	NA	NA	NA	inter
CUST_8862_PI429285431	3.3771977	P	3.9408565	P	0.676584109976946	0	lncRNA	10401-1_{1..1897}	lnc-ZFAND2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZFAND2A-1:1	chr7	  1132571	  1134467	-	lnc-ZFAND2A-1	lnc-ZFAND2A-1:1	ENSG00000249802	ENST00000508834	C7orf50	"hg19_refFlat_GPER:range=chr7:1131365-11324925'pad=0,hg19_refFlat_GPER:range=chr7:1131365-11324925'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.40chr7:1122571-1143445"	NA	inner
CUST_37972_PI429285431	9.04422	P	9.259787	P	0.86120762614937	0	lncRNA	39060-1_{1..400}	n346523|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2073|NULL|-1.5712000|-0.2001585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346523|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2073|NULL|-1.5712000|-0.2001585	chr13	 82264109	 82264508	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12230_PI429285431	1.3609862	A	1.4554586	A	0.936614708980136	0	lncRNA	13836-1_{1..262}	lnc-HIST1H2BJ-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HIST1H2BJ-2:1	chr6	 27037206	 27037467	-	lnc-HIST1H2BJ-2	lnc-HIST1H2BJ-2:1	XLOC_005657	linc-ZNF322A-4	NA	NA	NA	inter
CUST_35965_PI429285431	3.9760072	P	3.8212743	P	1.11321549886339	0	lncRNA	37315-1_{1..1000}	n344590|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_138|NULL|-1.3127400|-0.2723334	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344590|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_138|NULL|-1.3127400|-0.2723334	chr10	  3974895	  3975894	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_736_PI429285431	0.91294175	A	0.899282	A	1.00951318257004	0	lncRNA	728-2_{3001..6000}	"transcript_id ""ENST00000454224.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454224.1"" | genecode_v17"	chr2	  8702963	  8705962	-	ENSG00000236008.1	ENST00000454224.1	AC011747.4	AC011747.4-001	NA	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30"	NA	inter
CUST_40970_PI429285431	1.4011252	A	0.913588	A	1.40204941714484	0	lncRNA	41641-2_{3001..3629}	n411040|NR_038864|lncRNA|Homosapiens||RefGeneNoncode|NR_038864||-1.0368900|-0.2369240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411040|NR_038864|lncRNA|Homosapiens||RefGeneNoncode|NR_038864||-1.0368900|-0.2369240	chr7	 35356465	 35357093	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19148_PI429285431	16.258976	P	17.170177	P	0.531742247582008	0	lncRNA	20822-1_{1..122}	lnc-BSPH1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,"	>lnc-BSPH1-2:1	NA	NA	      121	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10412_PI429285431	3.8951888	P	4.0504804	P	0.897950859170419	0	lncRNA	11939-1_{1..657}	lnc-C5orf27-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf27-1:1	chr5	 95183761	 95184417	+	lnc-C5orf27-1	lnc-C5orf27-1:1	XLOC_004478	linc-CAST-3	NA	NA	NA	inter
CUST_43047_PI429285431	0.9006884	A	1.2519753	A	0.78388455221496	0	lncRNA	46715-1_{1..126}	ENST00000408132 ncrna:snRNA chromosome:GRCh37:3:87959370:87959495:1 gene:ENSG00000221059 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408132 ncrna:snRNA chromosome:GRCh37:3:87959370:87959495:1 gene:ENSG00000221059 gene_biotype:snRNA transcript_biotype:snRNA	chr3	 87959370	 87959495	+	ENSG00000221059	ENST00000408132	NA	NA	NA	NA	NA	inter
CUST_22790_PI429285431	2.4588575	A	2.5578897	A	0.933659106028461	0	lncRNA	24370-1_{1..482}	lnc-GNS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNS-1:1	chr12	 65048536	 65049017	-	lnc-GNS-1	lnc-GNS-1:1	ENSG00000256314.1	RP11-338E21.3	RASSF3	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-55.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-22.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50chr12:65038536-65058799"	NA	inner
CUST_4600_PI429285431	0.9219797	A	1.0115585	A	0.939797086300735	0	lncRNA	4549-1_{1..183}	"transcript_id ""ENST00000400431.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000400431.2"" | genecode_v17"	chr13	 41026794	 41026976	-	ENSG00000215483.4	ENST00000400431.2	LINC00598	LINC00598-002	NA	NA	NA	inter
CUST_14425_PI429285431	1.37572	A	1.2553797	A	1.08699122959074	0	lncRNA	16086-1_{1..419}	lnc-RP11-181C3.1.1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-181C3.1.1-1:8	chr12	 98897538	 98897956	-	lnc-RP11-181C3.1.1-1	lnc-RP11-181C3.1.1-1:8	XLOC_010167	linc-CDK17-4	NA	NA	NA	inter
CUST_29255_PI429285431	6.446171	P	6.8663282	P	0.747343187321743	0	lncRNA	31006-1_{1..243}	n332350|FJ423750|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558581|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558581|0.4998080|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332350|FJ423750|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558581|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558581|0.4998080|-1.0000000	chr19	  1461762	  1462004	-	NA	NA	NA	NA	C19orf25	NA	chr19:1473200-1479228	inner
CUST_38205_PI429285431	3.679101	P	2.406154	A	2.41654690894733	0	lncRNA	39272-1_{1..2195}	n381559|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lcv.1||-0.3596630|-0.1963853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381559|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lcv.1||-0.3596630|-0.1963853	chr10	118588285	118590479	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35016_PI429285431	1.6339779	A	0.9011844	A	1.66185383689202	0	lncRNA	36430-1_{1..608}	n341953|AY387667|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4434|NULL|-0.9528690|-0.2492976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341953|AY387667|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4434|NULL|-0.9528690|-0.2492976	chr12	 66261450	 66262057	-	NA	NA	NA	NA	HMGA2	NA	chr12:66251450-66272037	inner
LNCA_19_P00810227	2.0099213	A	2.0739172	A	0.956610876683753	0	lncRNA	TCONS_00022559	NA	NA	NA	NA	XLOC_010879	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010879), lincRNA [TCONS_00022559]"	chr14:76729786-76729845	hs|14q24.3	Agilent_HUMAN_G3V2	TCONS_00022559	TCONS_00022559	chr14	 76729786	 76729845	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46382_PI429285431	0.928526	A	1.0548186	A	0.916182810337982	0	lncRNA	50599-1_{1..1350}	"gi|310123151|ref|XR_110241.1| PREDICTED: Homo sapiens uncharacterized LOC100506999 (LOC100506999), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310123151|ref|XR_110241.1| PREDICTED: Homo sapiens uncharacterized LOC100506999 (LOC100506999), misc_RNA"	Chr14	 96039923	 96041272	+	100506999	XR_110241.1	NA	NA	NA	NA	NA	inter
CUST_11159_PI429285431	1.0995499	A	1.2123595	A	0.92478531880919	0	lncRNA	12717-1_{1..519}	lnc-DYNC1I1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DYNC1I1-1:2	chr7	 95311332	 95311850	+	lnc-DYNC1I1-1	lnc-DYNC1I1-1:2	XLOC_006179	linc-DYNC1I1-1	NA	NA	NA	inter
LNCA_21_P0002391	0.93172085	A	1.6687094	A	0.599990453013072	0	lncRNA	TCONS_00004114	NA	NA	NA	NA	XLOC_001964	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001964), lincRNA [TCONS_00004114]"	chr2:6778254-6775745	hs|2p25.2	Agilent_HUMAN_G3V2	TCONS_00004114	TCONS_00004114	chr2	  6775745	  6778254	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17978_PI429285431	2.5983236	A	3.116169	P	0.698414104666221	0	lncRNA	19711-1_{1..1316}	lnc-CD276-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD276-2:7	chr15	 74061811	 74063126	+	lnc-CD276-2	lnc-CD276-2:7	XLOC_011305	linc-TBC1D21	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30"	NA	inter
CUST_3568_PI429285431	3.49095	P	3.510571	P	0.986491824602266	0	lncRNA	3538-1_{1..1274}	"transcript_id ""ENST00000566567.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566567.1"" | genecode_v17"	chr9	138999654	139000927	-	ENSG00000260193.1	ENST00000566567.1	RP11-83N9.5	RP11-83N9.5-002	C9orf69	NA	chr9:139006427-139010731	inter
CUST_32667_PI429285431	2.5535758	A	2.518626	A	1.02452117318565	0	lncRNA	34318-1_{1..608}	n339293|AF075021|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1725|NULL|-0.5052340|-0.2447515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339293|AF075021|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1725|NULL|-0.5052340|-0.2447515	chr3	 37297353	 37297960	+	NA	NA	NA	NA	GOLGA4	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr3:37287353-37307961"	NA	inner
CUST_25742_PI429285431	4.75183	P	4.72269	P	1.02040367503436	0	lncRNA	27268-1_{1..540}	lnc-MFAP4-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MFAP4-3:2	chr17	 19364016	 19364555	-	lnc-MFAP4-3	lnc-MFAP4-3:2	ENSG00000235979.1	AC004448.5	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20"	NA	inter
CUST_36110_PI429285431	11.245974	P	10.828135	P	1.33592498525655	0	lncRNA	37402-1_{1..1220}	n344687|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_236|NULL|-1.3272100|-0.1805387	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344687|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_236|NULL|-1.3272100|-0.1805387	chr4	 88812969	 88814188	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29068_PI429285431	7.2478623	P	7.4134483	P	0.891566305673073	0	lncRNA	30797-1_{1..448}	n326559|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026685|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026685|-0.9625340|-0.5763508	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326559|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026685|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026685|-0.9625340|-0.5763508	chr1	 76996396	 76996843	-	NA	NA	NA	NA	ST6GALNAC3	NA	chr1:76986396-77027540	inner
CUST_45561_PI429285431	0.921317	A	0.9482955	A	0.981473690317499	0	lncRNA	49960-1_{1..1238}	"gi|390407645|ref|NR_051997.1| Homo sapiens zinc finger protein 33B pseudogene (LOC100419868), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|390407645|ref|NR_051997.1| Homo sapiens zinc finger protein 33B pseudogene (LOC100419868), non-coding RNA"	Chr10	 38082866	 38084103	-	100419868	NR_051997.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0011290	1.7927978	A	0.91047	A	1.84334715844698	0	lncRNA	TCONS_l2_00008417	NA	NA	NA	NA	XLOC_l2_004563	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004563), lincRNA [TCONS_l2_00008417]"	chr15:23105673-23105732	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00008417	TCONS_l2_00008417	chr15	 23105673	 23105732	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28257_PI429285431	1.1261675	A	0.91452897	A	1.15800263007175	0	lncRNA	29893-1_{1..435}	n325550|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255664|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255664|-0.6172830|-0.3513841	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325550|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255664|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255664|-0.6172830|-0.3513841	chr17	 44068899	 44069333	-	NA	NA	NA	NA	MAPT	"hg19_refFlat_MAPT:range=chr17:44039704-441015375'pad=0,hg19_refFlat_MAPT:range=chr17:44039704-441015375'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_MAPT:range=chr17_ctg5_hap1:766441-8279955'pad=0,hg19_refFlat_MAPT:range=chr17_ctg5_hap1:766441-8279955'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00chr17:44058899-44081646"	NA	inner
CUST_31196_PI429285431	1.184918	A	0.8930417	A	1.22423141947469	0	lncRNA	32990-1_{1..2487}	n337638|AK097484|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|17|NULL|-1.2422500|-0.3910720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337638|AK097484|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|17|NULL|-1.2422500|-0.3910720	chrX	 17168617	 17171103	+	NA	NA	NA	NA	REPS2	NA	chrX:17158617-17171403	inner
LNCA_21_P0008608	3.661477	P	3.6268113	P	1.02431944114937	0	lncRNA	TCONS_00023347	NA	NA	NA	NA	XLOC_011210	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011210), lincRNA [TCONS_00023347]"	chr15:36450093-36450152	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00023347	TCONS_00023347	chr15	 36450093	 36450152	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24453_PI429285431	0.9121898	A	1.0061282	A	0.936961452273185	0	lncRNA	26006-1_{1..333}	lnc-HOXB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-HOXB1-1:1	chr17	 46457545	 46457877	-	lnc-HOXB1-1	lnc-HOXB1-1:1	ENSG00000266222.1	RP11-433M22.1	SKAP1	NA	chr17:46447545-46467732	inner
CUST_52041_PI429285431	2.8503878	A	3.0214653	A	0.888179082551779	0	lncRNA	55571-1_{1..876}	hg19_lincRNAsTranscripts_TCONS_l2_00017184 range=chr21:29581829-29598320 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017184 range=chr21:29581829-29598320 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 29581829	 29582704	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32937_PI429285431	1.0520709	A	1.1923189	A	0.907363165727624	0	lncRNA	34558-1_{1..1194}	n339609|AL137625|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2053|NULL|-1.1488700|-0.1848481	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339609|AL137625|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2053|NULL|-1.1488700|-0.1848481	chr20	 23497520	 23498713	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29376_PI429285431	6.092043	P	6.33368	P	0.845785070640895	0	lncRNA	31128-1_{1..225}	n332646|AB037880|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059202|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059202|1.0057800|-0.0108727	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332646|AB037880|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059202|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059202|1.0057800|-0.0108727	chr3	  9793587	  9793811	+	NA	NA	NA	NA	OGG1	NA	chr3:9791628-9808353	inner
LNCA_21_P0004568	10.830389	P	11.043599	P	0.862615772268675	0	lncRNA	XR_108596	XR_108596	XR_108596	NA	Hs.728549	LOC100505994	uncharacterized LOC100505994	NA	THC2509767	NA	"PREDICTED: Homo sapiens hypothetical LOC100505994 (LOC100505994), miscRNA [XR_108596]"	chr5:90608919-90608860	hs|5q14.3	Agilent_HUMAN_G3V2	XR_108596	XR_108596	chr5	 90608860	 90608919	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45794_PI429285431	5.696232	P	6.2160864	P	0.697442217046979	0	lncRNA	50134-1_{1..665}	"gi|224493888|ref|NR_027134.1| Homo sapiens uncharacterized DKFZp779M0652 (DKFZp779M0652), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224493888|ref|NR_027134.1| Homo sapiens uncharacterized DKFZp779M0652 (DKFZp779M0652), non-coding RNA"	Chr11	 45792983	 45793647	+	374387	NR_027134.1	NA	NA	NA	NA	NA	inter
CUST_22611_PI429285431	0.9023481	A	1.0817612	A	0.883062160052432	0	lncRNA	24196-1_{1..473}	lnc-C16orf88-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf88-1:3	chr16	 19777291	 19777763	-	lnc-C16orf88-1	lnc-C16orf88-1:3	ENSG00000261195.1	CTD-2380F24.1	IQCK	NA	chr16:19767291-19787366	inner
CUST_46169_PI429285431	0.90872586	A	0.90693986	A	1.00123872745433	0	lncRNA	50417-1_{1..547}	"gi|341915651|ref|XR_132733.1| PREDICTED: Homo sapiens uncharacterized LOC100652856, transcript variant 2 (LOC100652856), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915651|ref|XR_132733.1| PREDICTED: Homo sapiens uncharacterized LOC100652856, transcript variant 2 (LOC100652856), misc_RNA"	NA	NA	NA	NA	NA	XR_132733.1	NA	NA	NA	NA	NA	Unknown
CUST_18740_PI429285431	1.6069244	A	1.3157164	A	1.22366444976391	0	lncRNA	20437-1_{1..697}	lnc-KCNC3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNC3-1:3	chr19	 50847930	 50848626	-	lnc-KCNC3-1	lnc-KCNC3-1:3	ENSG00000131401	NAPSB	NA	NA	NA	inter
CUST_18813_PI429285431	0.9168005	A	0.9169372	A	0.999905251269362	0	lncRNA	20507-1_{1..2134}	lnc-ANTXRL-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANTXRL-1:2	chr10	 47701069	 47703202	+	lnc-ANTXRL-1	lnc-ANTXRL-1:2	ENSG00000198250	ANTXRL	NA	NA	NA	inter
CUST_32196_PI429285431	1.7515554	A	0.9091879	A	1.7929900721817	0	lncRNA	33893-1_{1..1947}	n338769|AK023697|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1191|NULL|-1.0878800|-0.3794908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338769|AK023697|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1191|NULL|-1.0878800|-0.3794908	chr2	 38349076	 38351022	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1309_PI429285431	1.7377225	A	2.4597898	A	0.606228129053318	0	lncRNA	1299-1_{1..787}	"transcript_id ""ENST00000601399.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601399.1"" | genecode_v17"	chr3	 14178644	 14179430	+	ENSG00000268279.1	ENST00000601399.1	RP11-434D12.1	RP11-434D12.1-001	XPC	"hg19_refFlat_XPC:range=chr3:14187441-142200685'pad=0,hg19_refFlat_XPC:range=chr3:14187441-142200685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20chr3:14186647-14199548"	NA	inner
CUST_418_PI429285431	1.9907229	A	1.6543001	A	1.26262200521977	0	lncRNA	410-1_{1..851}	"transcript_id ""ENST00000422036.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422036.1"" | genecode_v17"	chr1	144276398	144277248	-	ENSG00000235398.3	ENST00000422036.1	LINC00623	LINC00623-007	NA	NA	NA	inter
CUST_36509_PI429285431	4.075062	P	4.1032243	P	0.980668674726685	0	lncRNA	37709-1_{1..1509}	n345010|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_559|NULL|-1.3232300|-0.3637857	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345010|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_559|NULL|-1.3232300|-0.3637857	chr8	 92075739	 92077247	+	NA	NA	NA	NA	OTUD6B	NA	chr8:92082424-92092050	inter
CUST_14104_PI429285431	7.8636365	P	6.3934927	P	2.77049507034961	0	lncRNA	15751-1_{1..348}	lnc-TGIF1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGIF1-1:4	chr18	  3478754	  3479101	+	lnc-TGIF1-1	lnc-TGIF1-1:4	XLOC_012611	linc-ARHGAP28-9	NA	NA	NA	inter
CUST_50204_PI429285431	3.4242043	P	3.36208	P	1.04400187286336	0	lncRNA	53929-1_{1..1391}	hg19_lincRNAsTranscripts_TCONS_l2_00029290 range=chr9:44053330-44069889 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029290 range=chr9:44053330-44069889 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 44053330	 44054720	-	NA	NA	NA	NA	LOC100653009	NA	chr9:44043330-44059514	inter
CUST_13603_PI429285431	0.9232542	A	0.91416764	A	1.00631819959099	0	lncRNA	15242-1_{1..282}	lnc-MAP1LC3B2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP1LC3B2-6:1	chr12	116797531	116797812	+	lnc-MAP1LC3B2-6	lnc-MAP1LC3B2-6:1	XLOC_009896	linc-MAP1LC3B2-3	NA	NA	NA	inter
CUST_50698_PI429285431	2.7557034	A	0.9246979	A	3.5578495377493	0	lncRNA	54368-2_{3001..5998}	hg19_lincRNAsTranscripts_TCONS_l2_00003055 range=chr10:52388816-52395863 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003055 range=chr10:52388816-52395863 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 52391816	 52394813	+	NA	NA	NA	NA	SGMS1	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_SHQ1:range=chr3:72799435-728974915'pad=0,hg19_refFlat_SHQ1:range=chr3:72799435-728974915'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.70chr10:52378816-52383737"	NA	inter
CUST_40512_PI429285431	2.3829355	A	2.5864046	A	0.868459754907292	0	lncRNA	41277-1_{1..2070}	n409521|NR_033906|lncRNA|Homosapiens||RefGeneNoncode|NR_033906||4.6802500|-0.1671667	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409521|NR_033906|lncRNA|Homosapiens||RefGeneNoncode|NR_033906||4.6802500|-0.1671667	chr5	  7299486	  7301555	-	NA	NA	NA	NA	NA	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20"	NA	inter
CUST_39873_PI429285431	1.0782164	A	1.5501564	A	0.720994420421577	0	lncRNA	40768-1_{1..3000}	n406541|NR_024052_4|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_4||1.1295700|-0.2281621	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406541|NR_024052_4|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_4||1.1295700|-0.2281621	chr6	  1585164	  1588163	-	NA	NA	NA	NA	GMDS	"hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.24;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_FOXC1:range=chr6:1610681-16123425'pad=0,hg19_refFlat_FOXC1:range=chr6:1610681-16123425'pad=0 3'pad=0 strand=+ repeatMasking=none,-112.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20chr6:1624041-1634902"	NA	inner
CUST_3491_PI429285431	8.683279	P	8.471061	P	1.15846784451063	0	lncRNA	3462-1_{1..403}	"transcript_id ""ENST00000422343.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422343.1"" | genecode_v17"	chr9	 98412436	 98412838	+	ENSG00000228142.2	ENST00000422343.1	RP11-180I4.2	RP11-180I4.2-001	NA	NA	NA	inter
CUST_34506_PI429285431	5.017214	P	4.846694	P	1.12546406995894	0	lncRNA	35970-2_{3001..4319}	n341381|BC034557|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3850|NULL|-0.8074680|-0.1184700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341381|BC034557|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3850|NULL|-0.8074680|-0.1184700	chr7	157650276	157651594	+	NA	NA	NA	NA	PTPRN2	NA	chr7:157637276-157668784	inner
CUST_10379_PI429285431	0.91918653	A	0.9253608	A	0.995729466928493	0	lncRNA	11908-1_{1..1013}	lnc-SPTLC3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPTLC3-1:3	chr20	 12951045	 12952057	+	lnc-SPTLC3-1	lnc-SPTLC3-1:3	XLOC_013465	linc-SPTLC3-1	NA	NA	NA	inter
CUST_9843_PI429285431	4.2630324	P	4.307777	P	0.969461425297172	0	lncRNA	11363-1_{1..827}	lnc-ALDH7A1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALDH7A1-2:2	chr5	125620682	125621508	-	lnc-ALDH7A1-2	lnc-ALDH7A1-2:2	XLOC_004984	linc-ZNF608-3	NA	NA	NA	inter
CUST_20833_PI429285431	0.9162373	A	0.9087165	A	1.00522663275313	0	lncRNA	22464-1_{1..380}	lnc-PITPNC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PITPNC1-2:1	chr17	 65221403	 65221782	+	lnc-PITPNC1-2	lnc-PITPNC1-2:1	ENSG00000264421.1	RP11-401F2.4	HELZ	NA	chr17:65211403-65231657	inner
LNCA_21_P0009411	0.9293334	A	1.6687952	A	0.598962754777862	0	lncRNA	THC2545285	NA	NA	NA	NA	XLOC_012567	NA	NA	THC2545285	NA	"BROAD Institute lincRNA (XLOC_012567), lincRNA [TCONS_00026154]"	chr17:070320646-070320587	hs|17q24.3	Agilent_HUMAN_G3V2	THC2545285	THC2545285	chr17	 70320587	 70320646	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009528	4.7941604	P	4.6249075	P	1.12447602368838	0	lncRNA	TCONS_00026421	NA	NA	NA	NA	XLOC_012768	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012768), lincRNA [TCONS_00026421]"	chr18:11366828-11366769	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_00026421	TCONS_00026421	chr18	 11366769	 11366828	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006483	1.5788444	A	1.5539302	A	1.01741918232119	0	lncRNA	TCONS_00017140	NA	NA	NA	NA	XLOC_007930	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007930), lincRNA [TCONS_00017140]"	chrX:13353855-13353914	hs|Xp22.2	Agilent_HUMAN_G3V2	TCONS_00017140	TCONS_00017140	chrX	 13353855	 13353914	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003687	0.93084824	A	0.9221876	A	1.0060211529018	0	lncRNA	TCONS_00008349	NA	NA	NA	NA	XLOC_003796	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003796), lincRNA [TCONS_00008349]"	chr4:178882006-178882065	hs|4q34.3	Agilent_HUMAN_G3V2	TCONS_00008349	TCONS_00008349	chr4	178882006	178882065	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43567_PI429285431	4.34667	P	4.269172	P	1.05518649118189	0	lncRNA	48341-1_{1..1610}	"gi|303304952|ref|NR_036540.1| Homo sapiens long intergenic non-protein coding RNA 622 (LINC00622), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|303304952|ref|NR_036540.1| Homo sapiens long intergenic non-protein coding RNA 622 (LINC00622), non-coding RNA"	Chr1	120140325	120141934	-	644242	NR_036540.1	NA	NA	NA	NA	NA	inter
CUST_43183_PI429285431	2.340141	A	1.9195987	A	1.33843056788025	0	lncRNA	47997-1_{1..545}	ENST00000602598 havana:sense_intronic chromosome:GRCh37:11:118286692:118287236:1 gene:ENSG00000269944 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602598 havana:sense_intronic chromosome:GRCh37:11:118286692:118287236:1 gene:ENSG00000269944 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr11	118286692	118287236	+	ENSG00000269944	ENST00000602598	NA	NA	ATP5L	NA	chr11:118276692-118280562	inter
CUST_37926_PI429285431	4.672421	P	3.9037578	P	1.70369041383662	0	lncRNA	39014-1_{1..410}	n346467|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2017|NULL|-1.4475000|-0.1658926	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346467|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2017|NULL|-1.4475000|-0.1658926	chr1	148251677	148252086	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10336_PI429285431	1.1777999	A	0.90518665	A	1.20799396739372	0	lncRNA	11865-1_{1..499}	lnc-AKR1E2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AKR1E2-5:2	chr10	  4069101	  4069599	+	lnc-AKR1E2-5	lnc-AKR1E2-5:2	XLOC_008358	linc-AKR1E2-5	NA	NA	NA	inter
LNCA_21_P0007090	0.95232815	A	0.92665154	A	1.01795699213861	0	lncRNA	THC2652142	NA	NA	NA	NA	XLOC_008688	NA	NA	THC2652142	NA	"BROAD Institute lincRNA (XLOC_008688), lincRNA [TCONS_00018866]"	chr10:002489294-002489235	hs|10p15.3	Agilent_HUMAN_G3V2	THC2652142	THC2652142	chr10	  2489235	  2489294	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10769_PI429285431	5.3910117	P	5.611948	P	0.858008413645733	0	lncRNA	12305-1_{1..908}	lnc-RGMA-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGMA-5:1	chr15	 94086306	 94087213	-	lnc-RGMA-5	lnc-RGMA-5:1	XLOC_011588	linc-RGMA-14	NA	NA	NA	inter
LNCA_21_P0009193	7.414613	P	7.5562406	P	0.906495900052781	0	lncRNA	ENST00000438772	NA	NA	NA	NA	XLOC_012505	NA	ENST00000438772	THC2677759	NA	"BROAD Institute lincRNA (XLOC_012505), lincRNA [TCONS_00025232]"	chr17:46716530-46716471	hs|17q21.32	Agilent_HUMAN_G3V2	ENST00000438772	ENST00000438772	chr17	 46716471	 46716530	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19479_PI429285431	3.2828891	P	3.7408729	P	0.728002949187351	0	lncRNA	21136-1_{1..1784}	lnc-RP11-305N23.1.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-305N23.1.1-1:3	chr11	119397072	119398855	+	lnc-RP11-305N23.1.1-1	lnc-RP11-305N23.1.1-1:3	ENSG00000245248.3	RP11-305N23.1	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_6954_PI429285431	2.388754	A	1.5080234	A	1.84130752786079	0	lncRNA	6903-1_{1..3000}	"transcript_id ""ENST00000564772.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564772.1"" | genecode_v17"	chr22	 26917949	 26920948	-	ENSG00000260065.1	ENST00000564772.1	CTA-445C9.15	CTA-445C9.15-001	TFIP11	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10chr22:26907949-26908437"	NA	inter
CUST_6998_PI429285431	0.93888843	A	0.92052734	A	1.01280826990807	0	lncRNA	6946-1_{1..951}	"transcript_id ""ENST00000450750.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450750.1"" | genecode_v17"	chr22	 43796337	 43797287	+	ENSG00000236117.1	ENST00000450750.1	RP4-754E20__A.5	RP4-754E20__A.5-001	MPPED1	NA	chr22:43808020-43815687	inter
CUST_8382_PI429285431	2.1150267	A	1.7573707	A	1.28134236108936	0	lncRNA	9961-1_{1..2962}	lnc-C1orf195-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C1orf195-1:1	chr1	 15478787	 15481748	-	lnc-C1orf195-1	lnc-C1orf195-1:1	ENSG00000175147	C1orf126	TMEM51	NA	chr1:15479028-15488960	inter
CUST_4670_PI429285431	1.3659786	A	1.1798947	A	1.13767138728338	0	lncRNA	4616-1_{1..734}	"transcript_id ""ENST00000446579.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446579.1"" | genecode_v17"	chr13	 89925457	 89926190	+	ENSG00000234660.1	ENST00000446579.1	LINC00440	LINC00440-001	NA	NA	NA	inter
CUST_44339_PI429285431	7.537298	P	7.0085254	P	1.4427012679575	0	lncRNA	48966-1_{1..2945}	"gi|289547552|ref|NR_033339.1| Homo sapiens CTBP1 antisense RNA 1 (CTBP1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|289547552|ref|NR_033339.1| Homo sapiens CTBP1 antisense RNA 1 (CTBP1-AS1), non-coding RNA"	Chr4	  1243228	  1246172	+	92070	NR_033339.1	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10"	NA	inter
CUST_46577_PI429285431	0.91971445	A	1.0340359	A	0.923816711915434	0	lncRNA	50761-1_{1..672}	"gi|299890802|ref|NR_033914.1| Homo sapiens long intergenic non-protein coding RNA 254 (LINC00254), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299890802|ref|NR_033914.1| Homo sapiens long intergenic non-protein coding RNA 254 (LINC00254), non-coding RNA"	Chr16	  1928286	  1928957	-	64735	NR_033914.1	NA	NA	NA	NA	NA	inter
CUST_5229_PI429285431	0.92780066	A	0.9310341	A	0.997761259905543	0	lncRNA	5170-1_{1..472}	"transcript_id ""ENST00000558429.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558429.1"" | genecode_v17"	chr15	 71041271	 71041742	+	ENSG00000259532.1	ENST00000558429.1	RP11-138H8.2	RP11-138H8.2-001	UACA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00chr15:71031271-71055850"	NA	inner
CUST_27352_PI429285431	0.92398924	A	0.91667855	A	1.00508024506711	0	lncRNA	28915-1_{1..348}	n324513|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040694|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040694|-1.0825100|-0.2552786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324513|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040694|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040694|-1.0825100|-0.2552786	chr6	 43798500	 43798847	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11083_PI429285431	4.8813596	P	4.901313	P	0.986264560973751	0	lncRNA	12636-1_{1..483}	lnc-KLHL31-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL31-2:1	chr6	 53658971	 53659453	-	lnc-KLHL31-2	lnc-KLHL31-2:1	XLOC_005748	linc-KLHL31-1	LRRC1	NA	chr6:53659778-53669072	inter
CUST_15561_PI429285431	5.4957266	P	5.523814	P	0.980719589153077	0	lncRNA	17246-1_{1..327}	lnc-TOX2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TOX2-1:2	chr20	 42523683	 42524009	+	lnc-TOX2-1	lnc-TOX2-1:2	XLOC_013528	linc-TOX2	NA	NA	NA	inter
CUST_20153_PI429285431	2.8604298	A	2.7878554	A	1.05159151032786	0	lncRNA	21798-1_{1..156}	lnc-CHAD-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHAD-5:1	chr17	 48641058	 48641213	-	lnc-CHAD-5	lnc-CHAD-5:1	ENSG00000250976.1	RP11-94C24.11	SPATA20	NA	chr17:48631058-48633213	inter
LNCA_21_P0005091	1.4000448	A	1.826262	A	0.744210577079775	0	lncRNA	TCONS_00012367	NA	NA	NA	NA	XLOC_005932	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005932), lincRNA [TCONS_00012367]"	chr6:169357855-169343891	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012367	TCONS_00012367	chr6	169343891	169357855	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32425_PI429285431	1.2812448	A	1.7050282	A	0.745467106208591	0	lncRNA	34100-2_{3001..3142}	n339019|AL833646|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1448|NULL|-1.0397000|-0.2240129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339019|AL833646|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1448|NULL|-1.0397000|-0.2240129	chr2	175193754	175193895	+	NA	NA	NA	NA	SP9	NA	chr2:175199821-175202268	inter
CUST_11854_PI429285431	5.038342	P	5.5184917	P	0.716903231306142	0	lncRNA	13431-1_{1..245}	lnc-ZNF74-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF74-1:2	chr22	 20853528	 20853772	+	lnc-ZNF74-1	lnc-ZNF74-1:2	XLOC_014159	linc-MED15	KLHL22	NA	chr22:20843528-20850170	inter
CUST_25799_PI429285431	1.2543757	A	2.422281	A	0.445067080332561	0	lncRNA	27320-1_{1..2168}	lnc-MB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MB-2:1	chr22	 35468844	 35471011	-	lnc-MB-2	lnc-MB-2:1	ENSG00000227895.3	RP1-272J12.1	ISX	NA	chr22:35462130-35478882	inner
CUST_10876_PI429285431	4.9569073	P	5.0699177	P	0.924656612489185	0	lncRNA	12416-1_{1..269}	lnc-GATA3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GATA3-2:2	chr10	  8084672	  8084940	+	lnc-GATA3-2	lnc-GATA3-2:2	XLOC_008380	linc-GATA3-2	NA	NA	NA	inter
LNCA_21_P0003406	2.25992	A	0.9974016	A	2.39914175032014	0	lncRNA	ENST00000511749	NA	NA	NA	NA	XLOC_003699	NA	ENST00000511749	NA	NA	"BROAD Institute lincRNA (XLOC_003699), lincRNA [TCONS_00007632]"	chr4:137059970-137060029	hs|4q28.3	Agilent_HUMAN_G3V2	ENST00000511749	ENST00000511749	chr4	137059970	137060029	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00317534	1.0407445	A	0.9976475	A	1.03032322535825	0	lncRNA	ENST00000418215	NA	NA	NA	NA	XLOC_006237	NA	ENST00000418215	NA	NA	"BROAD Institute lincRNA (XLOC_006237), lincRNA [TCONS_00013076]"	chr7:126990439-126990498	hs|7q31.33	Agilent_HUMAN_G3V2	ENST00000418215	ENST00000418215	chr7	126990439	126990498	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16501_PI429285431	1.3932582	A	1.17958	A	1.15964096221558	0	lncRNA	18198-1_{1..849}	lnc-FAM20C-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM20C-4:4	chr7	   391006	   391854	+	lnc-FAM20C-4	lnc-FAM20C-4:4	XLOC_005955	linc-HEATR2-5	NA	NA	NA	inter
CUST_31127_PI429285431	8.446123	P	8.415432	P	1.02150127160794	0	lncRNA	32922-1_{1..463}	n337447|DQ980619|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394674|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394674|1.3281700|-0.1730058	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337447|DQ980619|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394674|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394674|1.3281700|-0.1730058	chr2	234216525	234216987	+	NA	NA	NA	NA	SAG	NA	chr2:234216309-234241615	inner
CUST_240_PI429201921	6.1705174	P	6.447208	P	0.825482422274545	0	lncRNA	183-1_{1..3000}	TC17002280.hg.1	TCONS_l2_00011578-XLOC_l2_005832 // Broad TUCP // linc-KIF2B-4 chr17:+:49517013-49523163 // chr17 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr17:+:49517013-49523163	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00011578-XLOC_l2_005832	linc-KIF2B-4	chr17	 49517013	 49523163	+	NA	NA	NA	NA	TAF12	NA	chr1:28959740-28969604	Unknown
CUST_34872_PI429285431	1.0929348	A	0.9212941	A	1.12633868141356	0	lncRNA	36298-1_{1..651}	n341786|CR608805|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4263|NULL|-1.2883800|-0.4169737	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341786|CR608805|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4263|NULL|-1.2883800|-0.4169737	chr9	128519872	128520522	+	NA	NA	NA	NA	PBX3	NA	chr9:128509872-128530523	inner
CUST_7011_PI429285431	2.4342732	A	1.9114549	A	1.43675921273552	0	lncRNA	6958-1_{1..445}	"transcript_id ""ENST00000427886.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427886.1"" | genecode_v17"	chrX	  1851477	  1851921	+	ENSG00000223511.1	ENST00000427886.1	RP13-297E16.4	RP13-297E16.4-001	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40"	NA	inter
CUST_38537_PI429285431	12.818564	P	13.635127	P	0.567793012550665	0	lncRNA	39547-1_{1..2070}	n383230|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jrt.2||-0.9652670|-0.1515910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383230|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jrt.2||-0.9652670|-0.1515910	chr17	 74492861	 74494930	-	NA	NA	NA	NA	RHBDF2	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70chr17:74482861-74497509"	NA	inner
CUST_31981_PI429285431	2.7814126	A	2.8643332	A	0.944144379542962	0	lncRNA	33703-1_{1..2880}	n338540|AK023086|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|943|NULL|0.1154070|-0.2812455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338540|AK023086|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|943|NULL|0.1154070|-0.2812455	chr1	224645507	224648386	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_49885_PI429285431	0.90982836	A	0.91243	A	0.998198305572706	0	lncRNA	53636-1_{1..1385}	hg19_lincRNAsTranscripts_TCONS_l2_00026698 range=chr7:76680283-76682520 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026698 range=chr7:76680283-76682520 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 76680283	 76681667	-	NA	NA	NA	NA	LOC100505767	NA	chr7:76682095-76689829	inter
CUST_8218_PI429285431	1.3791901	A	2.2584949	A	0.543629330040116	0	lncRNA	9809-2_{3001..6000}	lnc-TMEM132D-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM132D-3:6	chr12	130649507	130652506	-	lnc-TMEM132D-3	lnc-TMEM132D-3:6	ENSG00000250208	ENST00000505807	FZD10	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10chr12:130647004-130650285"	NA	inter
CUST_42170_PI429285431	2.1811814	A	0.9218078	A	2.39391777463628	0	lncRNA	44218-1_{1..83}	ENST00000385277 ncrna:miRNA chromosome:GRCh37:X:53584153:53584235:-1 gene:ENSG00000208012 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385277 ncrna:miRNA chromosome:GRCh37:X:53584153:53584235:-1 gene:ENSG00000208012 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 53584153	 53584235	-	ENSG00000208012	ENST00000385277	NA	NA	HUWE1	NA	chrX:53574153-53594235	inner
CUST_21429_PI429285431	4.212291	P	4.393253	P	0.882114599430591	0	lncRNA	23048-3_{6001..8555}	lnc-WDR73-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR73-4:1	chr15	 84968536	 84971090	-	lnc-WDR73-4	lnc-WDR73-4:1	ENSG00000235370.3	CSPG4P5	NA	NA	NA	inter
CUST_48027_PI429285431	4.425904	P	4.7160363	P	0.817827057620028	0	lncRNA	51909-1_{1..1200}	"gi|410173682|ref|XR_172338.1| PREDICTED: Homo sapiens chromosome 20 open reading frame 181 (C20orf181), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410173682|ref|XR_172338.1| PREDICTED: Homo sapiens chromosome 20 open reading frame 181 (C20orf181), misc_RNA"	NA	NA	NA	NA	NA	XR_172338.1	NA	NA	NA	NA	NA	Unknown
CUST_1333_PI429285431	2.698358	A	1.6731879	A	2.03519932888414	0	lncRNA	1322-1_{1..1263}	"transcript_id ""ENST00000604982.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604982.1"" | genecode_v17"	chr3	 33837180	 33838442	-	ENSG00000271643.1	ENST00000604982.1	RP11-10C24.3	RP11-10C24.3-001	PDCD6IP	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60chr3:33840066-33848442"	NA	inter
CUST_40298_PI429285431	3.7928224	P	4.847109	P	0.48153527764432	0	lncRNA	41102-1_{1..864}	n408300|NR_028510|lncRNA|Homosapiens||RefGeneNoncode|NR_028510||3.3049500|-0.1503612	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408300|NR_028510|lncRNA|Homosapiens||RefGeneNoncode|NR_028510||3.3049500|-0.1503612	chr15	 76551629	 76552492	-	NA	NA	NA	NA	ETFA	NA	chr15:76541629-76562493	inner
CUST_13976_PI429285431	2.3932636	A	2.5610013	A	0.890237574863578	0	lncRNA	15621-1_{1..344}	lnc-MEGF10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MEGF10-1:1	chr5	126567666	126568009	+	lnc-MEGF10-1	lnc-MEGF10-1:1	XLOC_004540	linc-MEGF10	NA	NA	NA	inter
CUST_41877_PI429285431	5.7398868	P	6.089699	P	0.784686236241994	0	lncRNA	43548-1_{1..84}	ENST00000579628 ncrna:miRNA chromosome:GRCh37:15:49461267:49461350:-1 gene:ENSG00000264210 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579628 ncrna:miRNA chromosome:GRCh37:15:49461267:49461350:-1 gene:ENSG00000264210 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 49461267	 49461350	-	ENSG00000264210	ENST00000579628	NA	NA	GALK2	NA	chr15:49451267-49471350	inner
CUST_14741_PI429285431	0.9093652	A	1.3403478	A	0.741756413013387	0	lncRNA	16405-1_{1..527}	lnc-RAC3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAC3-1:2	chr17	 79997057	 79997583	+	lnc-RAC3-1	lnc-RAC3-1:2	XLOC_012343	linc-GPS1	LRRC45	NA	chr17:79987057-79989027	inter
CUST_38916_PI429285431	1.2051493	A	1.8553374	A	0.637197229841222	0	lncRNA	39905-1_{1..846}	n384997|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pvc.3||3.0134400|-0.3960395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384997|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pvc.3||3.0134400|-0.3960395	chr6	111816123	111816968	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1431_PI429285431	2.4558039	A	1.293907	A	2.23751429581235	0	lncRNA	1420-1_{1..1952}	"transcript_id ""ENST00000467240.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000467240.1"" | genecode_v17"	chr3	108855561	108857512	+	ENSG00000241224.2	ENST00000467240.1	RP11-59E19.1	RP11-59E19.1-001	NA	NA	NA	inter
CUST_14314_PI429285431	2.5652242	A	1.4878063	A	2.1102558154099	0	lncRNA	15972-1_{1..268}	lnc-GSR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GSR-1:1	chr8	 30594110	 30594377	-	lnc-GSR-1	lnc-GSR-1:1	XLOC_007047	linc-GSR-1	GSR	NA	chr8:30584110-30585486	inter
CUST_34502_PI429285431	1.711899	A	1.748369	A	0.975037762782814	0	lncRNA	35968-2_{3001..4095}	n341379|BC039304|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3848|NULL|-1.1253100|-0.2138356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341379|BC039304|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3848|NULL|-1.1253100|-0.2138356	chr7	157261922	157263016	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30043_PI429285431	3.7538435	P	4.1365175	P	0.767014629468982	0	lncRNA	31812-1_{1..506}	n334539|U47930|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220046|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220046|-1.0886000|-0.1215804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334539|U47930|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220046|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220046|-1.0886000|-0.1215804	chr12	  6949375	  6949880	+	NA	NA	NA	NA	LEPREL2	NA	chr12:6939375-6949018	inner
LNCA_21_P0005604	2.9261718	A	3.0686798	P	0.905942882606436	0	lncRNA	TCONS_00014314	NA	NA	NA	NA	XLOC_006471	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006471), lincRNA [TCONS_00014314]"	chr7:63762735-63761528	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_00014314	TCONS_00014314	chr7	 63761528	 63762735	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15398_PI429285431	0.93955046	A	1.2746488	A	0.792730099039816	0	lncRNA	17083-1_{1..907}	lnc-ADAMTS16-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ADAMTS16-2:1	chr5	  4867392	  4868298	+	lnc-ADAMTS16-2	lnc-ADAMTS16-2:1	XLOC_004268	linc-ADAMTS16-2	NA	NA	NA	inter
CUST_13896_PI429285431	1.098249	A	1.1877512	A	0.939846986221315	0	lncRNA	15543-1_{1..372}	lnc-TMEM72-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM72-1:1	chr10	 45086061	 45086432	+	lnc-TMEM72-1	lnc-TMEM72-1:1	XLOC_008474	linc-TMEM72-1	NA	NA	NA	inter
CUST_43769_PI429285431	0.9172334	A	0.91457194	A	1.0018464861551	0	lncRNA	48505-1_{1..1399}	"gi|410170420|ref|XR_171113.1| PREDICTED: Homo sapiens uncharacterized LOC101060009 (LOC101060009), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170420|ref|XR_171113.1| PREDICTED: Homo sapiens uncharacterized LOC101060009 (LOC101060009), misc_RNA"	NA	NA	NA	NA	NA	XR_171113.1	NA	NA	NA	NA	NA	Unknown
CUST_27351_PI429285431	0.9814591	A	1.9162306	A	0.523125318083954	0	lncRNA	28913-1_{1..1608}	n324511|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040705|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040705|-1.2002900|-0.2014976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324511|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040705|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040705|-1.2002900|-0.2014976	chr6	 44149627	 44151234	+	NA	NA	NA	NA	CAPN11	NA	chr6:44139627-44152139	inner
CUST_10310_PI429285431	0.922031	A	0.9164007	A	1.00391025173394	0	lncRNA	11838-1_{1..258}	lnc-ZCCHC7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZCCHC7-1:1	chr9	 37363049	 37363306	+	lnc-ZCCHC7-1	lnc-ZCCHC7-1:1	XLOC_007346	linc-GRHPR	ZCCHC7	NA	chr9:37353049-37358146	inter
CUST_50603_PI429285431	0.9147774	A	0.91685134	A	0.998563487110171	0	lncRNA	54290-1_{1..1577}	hg19_lincRNAsTranscripts_TCONS_l2_00003753 range=chr10:107249094-107580247 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003753 range=chr10:107249094-107580247 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	107249094	107250670	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51670_PI429285431	3.1859348	P	1.4185857	A	3.40427857780333	0	lncRNA	55234-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00011427 range=chr17:66116838-66132517 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011427 range=chr17:66116838-66132517 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 66122838	 66125837	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50"	NA	inter
CUST_14254_PI429285431	0.9083816	A	0.90197873	A	1.00444799437849	0	lncRNA	15911-1_{1..748}	lnc-TMED5-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMED5-1:10	chr1	 93811203	 93811950	-	lnc-TMED5-1	lnc-TMED5-1:10	XLOC_000918	linc-TMED5	DR1	NA	chr1:93811478-93821340	inter
CUST_44053_PI429285431	1.0858953	A	0.9001059	A	1.13743917602612	0	lncRNA	48728-1_{1..2083}	"gi|385275073|ref|NR_047660.1| Homo sapiens sperm associated antigen 16 (SPAG16), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385275073|ref|NR_047660.1| Homo sapiens sperm associated antigen 16 (SPAG16), transcript variant 4, non-coding RNA"	Chr2	214149103	214151185	+	79582	NR_047660.1	NA	NA	NA	NA	NA	inter
CUST_8330_PI429285431	3.791569	P	3.9560134	P	0.892272078457808	0	lncRNA	9912-1_{1..513}	lnc-COL20A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-COL20A1-1:2	chr20	 62002337	 62002849	+	lnc-COL20A1-1	lnc-COL20A1-1:2	ENSG00000203900	RP11-261N11.8	CHRNA4	NA	chr20:61992337-61992695	inter
CUST_17487_PI429285431	0.93192375	A	1.052122	A	0.920061210412014	0	lncRNA	19214-1_{1..230}	lnc-CCT5-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCT5-3:3	chr5	  9857504	  9857733	+	lnc-CCT5-3	lnc-CCT5-3:3	XLOC_004290	linc-CCT5-2	NA	NA	NA	inter
CUST_22307_PI429285431	0.92042613	A	0.9030272	A	1.01213303453329	0	lncRNA	23906-1_{1..553}	lnc-API5-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-API5-5:1	chr11	 41857899	 41858451	+	lnc-API5-5	lnc-API5-5:1	ENSG00000255171.1	RP11-375D13.2	NA	NA	NA	inter
CUST_42681_PI429285431	6.915452	P	7.3379135	P	0.746150469316958	0	lncRNA	45600-1_{1..137}	ENST00000386037 ncrna:snoRNA chromosome:GRCh37:2:86362993:86363129:1 gene:ENSG00000208772 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000386037 ncrna:snoRNA chromosome:GRCh37:2:86362993:86363129:1 gene:ENSG00000208772 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 86362993	 86363129	+	ENSG00000208772	ENST00000386037	NA	NA	IMMT	NA	chr2:86371055-86373129	inner
LNCA_21_P0014915	4.4804816	P	4.199188	P	1.21528408678969	0	lncRNA	XR_133053	XR_133053	XR_133053	NA	NA	LOC100653338	uncharacterized LOC100653338	NA	THC2573383	NA	"PREDICTED: Homo sapiens hypothetical LOC100653338 (LOC100653338), miscRNA [XR_133053]"	chr14:90871222-90871163	hs|14q32.11	Agilent_HUMAN_G3V2	XR_133053	XR_133053	chr14	 90871163	 90871222	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51372_PI429285431	8.279713	P	8.34552	P	0.955410740203958	0	lncRNA	54969-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00009364 range=chr15:100326087-100348713 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009364 range=chr15:100326087-100348713 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	100326087	100329086	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_LOC100505679:range=chr15:84841254-848508955'pad=0,hg19_refFlat_LOC100505679:range=chr15:84841254-848508955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_GOLGA8A:range=chr15:34673612-346818925'pad=0,hg19_refFlat_GOLGA8A:range=chr15:34673612-346818925'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_UBE2Q2:range=chr15:76136695-761917995'pad=0,hg19_refFlat_UBE2Q2:range=chr15:76136695-761917995'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_GOLGA8B:range=chr15:34819833-348281135'pad=0,hg19_refFlat_GOLGA8B:range=chr15:34819833-348281135'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00"	NA	inter
CUST_13679_PI429285431	2.9785924	P	2.6276424	A	1.27540018891032	0	lncRNA	15318-1_{1..1864}	lnc-ERP44-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERP44-3:7	chr9	102358472	102360335	-	lnc-ERP44-3	lnc-ERP44-3:7	XLOC_007808	linc-ALG2-5	NA	NA	NA	inter
CUST_43214_PI429285431	0.9255675	A	0.9205413	A	1.00348997217964	0	lncRNA	48028-1_{1..528}	ENST00000602347 havana:sense_intronic chromosome:GRCh37:12:124445264:124445791:-1 gene:ENSG00000270130 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602347 havana:sense_intronic chromosome:GRCh37:12:124445264:124445791:-1 gene:ENSG00000270130 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr12	124445264	124445791	-	ENSG00000270130	ENST00000602347	NA	NA	CCDC92	NA	chr12:124435264-124455791	inner
CUST_22598_PI429285431	6.4489975	P	6.5782757	P	0.914288766955334	0	lncRNA	24182-1_{1..575}	lnc-KLHDC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHDC4-1:1	chr16	 87812593	 87813167	-	lnc-KLHDC4-1	lnc-KLHDC4-1:1	ENSG00000260498.1	RP4-536B24.4	NA	NA	NA	inter
LNCA_21_P0004210	0.9568926	A	0.91731894	A	1.02781004707927	0	lncRNA	TCONS_00009849	NA	NA	NA	NA	XLOC_004261	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004261), lincRNA [TCONS_00009849]"	chr5:3345716-3345775	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00009849	TCONS_00009849	chr5	  3345716	  3345775	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44524_PI429285431	6.173362	P	5.8600225	P	1.2425806557708	0	lncRNA	49118-2_{3001..3881}	"gi|315221154|ref|NR_037665.1| Homo sapiens uncharacterized LOC100506548 (LOC100506548), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315221154|ref|NR_037665.1| Homo sapiens uncharacterized LOC100506548 (LOC100506548), non-coding RNA"	Chr5	 40828364	 40829244	-	100506548	NR_037665.1	NA	NA	NA	"hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.16;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30"	NA	inter
CUST_22657_PI429285431	1.5204896	A	0.98738825	A	1.4470365372921	0	lncRNA	24241-1_{1..569}	lnc-MRGPRD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRGPRD-1:1	chr11	 68710237	 68710805	-	lnc-MRGPRD-1	lnc-MRGPRD-1:1	ENSG00000255741.1	RP11-757G1.5	IGHMBP2	NA	chr11:68700237-68708069	inter
CUST_20220_PI429285431	9.707624	P	9.602754	P	1.07539748295599	0	lncRNA	21864-1_{1..622}	lnc-RPRML-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPRML-3:8	chr17	 45144780	 45145401	-	lnc-RPRML-3	lnc-RPRML-3:8	ENSG00000262879.1	RP11-156P1.3	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20"	NA	inter
CUST_34625_PI429285431	1.0266497	A	0.91757935	A	1.07853302281461	0	lncRNA	36078-2_{3001..3240}	n341516|BC040302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3986|NULL|-1.1417200|-0.3581235	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341516|BC040302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3986|NULL|-1.1417200|-0.3581235	chr8	 64381406	 64381645	+	NA	NA	NA	NA	NA	"hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10"	NA	inter
CUST_47560_PI429285431	0.91840196	A	0.90552956	A	1.00896239163403	0	lncRNA	51567-1_{1..1874}	"gi|255958157|ref|NR_002725.2| Homo sapiens inactivation escape 2 (non-protein coding) (INE2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|255958157|ref|NR_002725.2| Homo sapiens inactivation escape 2 (non-protein coding) (INE2), non-coding RNA"	ChrX	 15803839	 15805712	-	8551	NR_002725.2	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.52;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-29.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20"	NA	inter
CUST_1420_PI429285431	1.0873058	A	0.9151134	A	1.12676948616635	0	lncRNA	1409-1_{1..2119}	"transcript_id ""ENST00000464359.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000464359.2"" | genecode_v17"	chr3	107560150	107562268	-	ENSG00000241469.2	ENST00000464359.2	LINC00635	LINC00635-001	NA	NA	NA	inter
CUST_12044_PI429285431	7.6945963	P	8.271573	P	0.670367122352524	0	lncRNA	13629-1_{1..916}	lnc-HEATR6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HEATR6-1:2	chr17	 58165558	 58166473	-	lnc-HEATR6-1	lnc-HEATR6-1:2	XLOC_012538	linc-HEATR6-2	HEATR6	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr17:58155558-58156292"	NA	inter
CUST_10573_PI429285431	0.9063383	A	0.91801775	A	0.991937103102445	0	lncRNA	12105-1_{1..292}	lnc-DCAF4L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCAF4L1-1:1	chr4	 41980151	 41980442	+	lnc-DCAF4L1-1	lnc-DCAF4L1-1:1	XLOC_003522	linc-DCAF4L1	DCAF4L1	NA	chr4:41983713-41988484	inter
CUST_37050_PI429285431	0.90801954	A	0.9215772	A	0.990646564271152	0	lncRNA	38186-2_{3001..6000}	n345503|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1052|NULL|-1.5131900|-0.2775711	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345503|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1052|NULL|-1.5131900|-0.2775711	chr2	134886533	134889532	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60"	NA	inter
CUST_36315_PI429285431	8.021558	P	7.858504	P	1.11965479649046	0	lncRNA	37547-1_{1..1323}	n344842|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_391|NULL|-1.5482800|-0.4228947	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344842|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_391|NULL|-1.5482800|-0.4228947	chr5	102621729	102623051	-	NA	NA	NA	NA	C5orf30	NA	chr5:102611729-102614361	inter
CUST_39786_PI429285431	5.3078437	P	4.8221445	P	1.40026433719452	0	lncRNA	40699-1_{1..1567}	n406125|NR_003524|lncRNA|Homosapiens||RefGeneNoncode|NR_003524||3.8163000|-0.1647909	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406125|NR_003524|lncRNA|Homosapiens||RefGeneNoncode|NR_003524||3.8163000|-0.1647909	chr10	 30653255	 30654821	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2784_PI429285431	2.44812	P	1.1073799	A	2.53281218288354	0	lncRNA	2768-1_{1..747}	"transcript_id ""ENST00000602992.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602992.1"" | genecode_v17"	chr7	 25988277	 25989023	-	ENSG00000270933.1	ENST00000602992.1	CTD-2227E11.1	CTD-2227E11.1-001	NA	NA	NA	inter
CUST_3179_PI429285431	0.92669815	A	0.9519944	A	0.982618802114302	0	lncRNA	3158-1_{1..468}	"transcript_id ""ENST00000519134.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519134.1"" | genecode_v17"	chr8	 74271148	 74271615	+	ENSG00000253339.1	ENST00000519134.1	RP11-434I12.3	RP11-434I12.3-001	NA	NA	NA	inter
LNCA_21_P0005172	0.92776835	A	0.91077685	A	1.01184723945735	0	lncRNA	THC2631844	NA	NA	NA	NA	XLOC_005764	NA	NA	THC2631844	NA	"BROAD Institute lincRNA (XLOC_005764), lincRNA [TCONS_00012755]"	chr6:072118071-072118012	hs|6q13	Agilent_HUMAN_G3V2	THC2631844	THC2631844	chr6	 72118012	 72118071	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44105_PI429285431	2.4551432	A	2.9494555	A	0.709899990683056	0	lncRNA	48770-1_{1..650}	"gi|397139010|ref|XR_158991.1| PREDICTED: Homo sapiens uncharacterized LOC100996542 (LOC100996542), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139010|ref|XR_158991.1| PREDICTED: Homo sapiens uncharacterized LOC100996542 (LOC100996542), misc_RNA"	NA	NA	NA	NA	NA	XR_158991.1	NA	NA	NA	NA	NA	Unknown
CUST_31340_PI429285431	1.5886658	A	1.921252	A	0.794111668795871	0	lncRNA	33122-1_{1..2084}	n337808|AK123622|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|190|NULL|0.0199781|-0.2508744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337808|AK123622|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|190|NULL|0.0199781|-0.2508744	chr1	 28870971	 28873054	+	NA	NA	NA	NA	RCC1	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_RAET1G:range=chr6:150238048-1502441465'pad=0,hg19_refFlat_RAET1G:range=chr6:150238048-1502441465'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.41chr1:28860971-28865708"	NA	inter
CUST_643_PI429285431	0.9217465	A	0.9174306	A	1.00299603307944	0	lncRNA	635-1_{1..598}	"transcript_id ""ENST00000449621.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449621.1"" | genecode_v17"	chr2	   421133	   421730	+	ENSG00000226277.1	ENST00000449621.1	AC105393.2	AC105393.2-001	NA	NA	NA	inter
CUST_1703_PI429285431	1.1169196	A	1.9039472	A	0.579536888805825	0	lncRNA	1687-2_{3001..4781}	"transcript_id ""ENST00000508202.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508202.1"" | genecode_v17"	chr4	 13782001	 13783781	-	ENSG00000250497.1	ENST00000508202.1	AC007126.1	AC007126.1-001	NA	NA	NA	inter
CUST_10700_PI429285431	3.9035947	P	4.6032114	P	0.615735775664337	0	lncRNA	12235-1_{1..421}	lnc-COX10-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COX10-6:1	chr17	 13530885	 13531305	+	lnc-COX10-6	lnc-COX10-6:1	XLOC_012114	linc-COX10	NA	NA	NA	inter
CUST_22204_PI429285431	5.0142155	P	5.397796	P	0.766532836472978	0	lncRNA	23804-1_{1..955}	lnc-OR2G6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR2G6-2:1	chr1	248725901	248726855	+	lnc-OR2G6-2	lnc-OR2G6-2:1	ENSG00000224521.1	RP11-438F14.3	OR2T29	NA	chr1:248715901-248722792	inter
CUST_33790_PI429285431	0.91808474	A	0.91262555	A	1.00379119060749	0	lncRNA	35343-1_{1..2444}	n340578|AK126449|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3040|NULL|-1.1268700|-0.3104409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340578|AK126449|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3040|NULL|-1.1268700|-0.3104409	chr5	108061405	108063848	-	NA	NA	NA	NA	LOC100652853	NA	chr5:108063524-108064130	inter
CUST_46127_PI429285431	3.70799	P	3.551002	P	1.11495694473798	0	lncRNA	50384-2_{3001..4241}	"gi|330340410|ref|NR_038118.1| Homo sapiens methylmalonic aciduria (cobalamin deficiency) cblB type (MMAB), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|330340410|ref|NR_038118.1| Homo sapiens methylmalonic aciduria (cobalamin deficiency) cblB type (MMAB), transcript variant 2, non-coding RNA"	Chr12	109994520	109995760	-	326625	NR_038118.1	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80"	NA	inter
CUST_13299_PI429285431	0.9132813	A	0.9157468	A	0.99829250505737	0	lncRNA	14933-1_{1..472}	lnc-SCN11A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCN11A-1:2	chr3	 39019877	 39020348	-	lnc-SCN11A-1	lnc-SCN11A-1:2	XLOC_003087	linc-SCN11A-2	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60"	NA	inter
CUST_17166_PI429285431	2.7727125	A	2.276715	A	1.41029551662637	0	lncRNA	18876-1_{1..381}	lnc-CA7-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CA7-3:2	chr16	 66928898	 66929278	+	lnc-CA7-3	lnc-CA7-3:2	XLOC_011758	linc-CES2-2	PDP2	NA	chr16:66918898-66925004	inter
CUST_35471_PI429285431	4.8599186	P	5.5222316	P	0.631864448160545	0	lncRNA	36879-1_{1..2033}	n342561|D84212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5060|NULL|5.6358200|-0.3095450	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342561|D84212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5060|NULL|5.6358200|-0.3095450	chr20	 54944465	 54946497	-	NA	NA	NA	NA	CSTF1	NA	chr20:54967427-54975722	inner
CUST_27149_PI429285431	9.778836	P	9.644465	P	1.0976141611175	0	lncRNA	28685-1_{1..662}	n324273|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322488|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322488|-0.9029100|-0.0644719	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324273|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322488|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322488|-0.9029100|-0.0644719	chr7	   230935	   231596	-	NA	NA	NA	NA	FAM20C	NA	chr7:220935-254445	inner
CUST_18513_PI429285431	9.458876	P	9.2717495	P	1.13849385138955	0	lncRNA	20227-1_{1..394}	lnc-SLC39A11-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC39A11-2:8	chr17	 70106531	 70106924	-	lnc-SLC39A11-2	lnc-SLC39A11-2:8	ENSG00000234899	AC005152.2	NA	NA	NA	inter
CUST_10350_PI429285431	5.791024	P	6.255268	P	0.724850813567283	0	lncRNA	11878-2_{3001..3747}	lnc-AC092327.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-AC092327.1-1:1	chr16	 86386157	 86386903	-	lnc-AC092327.1-1	lnc-AC092327.1-1:1	XLOC_012045	linc-COX4NB-6	NA	NA	NA	inter
CUST_26201_PI429285431	5.3619504	P	5.751333	P	0.763456254974157	0	lncRNA	27712-1_{1..267}	lnc-GLRB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLRB-2:1	chr4	157763183	157763449	+	lnc-GLRB-2	lnc-GLRB-2:1	ENSG00000248629.1	RP11-154F14.2	PDGFC	NA	chr4:157753183-157773388	inter
LNCA_24_P110780	2.9842336	A	4.8289113	P	0.278417596473134	0	lncRNA	XR_110470	XR_110470	XR_110470	   374987	Hs.632414	NEXN-AS1	NEXN antisense RNA 1 (non-protein coding)	NA	THC2484325	NA	"PREDICTED: Homo sapiens chromosome 1 open reading frame 118 (C1orf118), miscRNA [XR_110470]"	chr1:78353507-78353448	hs|1p31.1	Agilent_HUMAN_G3V2	XR_110470	XR_110470	chr1	 78353448	 78353507	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_172_PI429285431	4.350632	P	3.8254821	P	1.43908309695212	0	lncRNA	162-2_{3001..4676}	"transcript_id ""ENST00000412427.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000412427.1"" | genecode_v17"	chr1	 17519278	 17520953	+	ENSG00000204362.5	ENST00000412427.1	RP11-380J14.1	RP11-380J14.1-001	PADI1	NA	chr1:17531621-17534112	inter
CUST_47812_PI429285431	0.90162575	A	0.8962866	A	1.00370767324705	0	lncRNA	51727-1_{1..1894}	"gi|341915968|ref|XR_110947.2| PREDICTED: Homo sapiens zinc finger protein 605-like (LOC90462), partial misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915968|ref|XR_110947.2| PREDICTED: Homo sapiens zinc finger protein 605-like (LOC90462), partial misc_RNA"	NT_167217.1	   149772	   151665	+	90462	XR_110947.2	NA	NA	NA	NA	NA	Unknown
CUST_1871_PI429285431	1.4258931	A	0.9733346	A	1.36846496522658	0	lncRNA	1861-1_{1..430}	"transcript_id ""ENST00000507299.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507299.1"" | genecode_v17"	chr4	125070532	125070961	-	ENSG00000249837.1	ENST00000507299.1	CTD-2325B11.1	CTD-2325B11.1-001	NA	NA	NA	inter
LNCA_21_P0006744	3.609673	P	3.533232	P	1.05441368500204	0	lncRNA	ENST00000414308	NA	NA	NA	NA	XLOC_008774	NA	ENST00000414308	NA	NA	"BROAD Institute lincRNA (XLOC_008774), lincRNA [TCONS_00017947]"	chr10:33385271-33385212	hs|10p11.22	Agilent_HUMAN_G3V2	ENST00000414308	ENST00000414308	chr10	 33385212	 33385271	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25874_PI429285431	4.85209	P	4.798441	P	1.03788672752424	0	lncRNA	27395-1_{1..3000}	lnc-LYZL1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-LYZL1-3:3	chr10	 29712718	 29715717	+	lnc-LYZL1-3	lnc-LYZL1-3:3	ENSG00000224597.3	RP11-534G20.3	NA	NA	NA	inter
CUST_9971_PI429285431	0.8914839	A	1.0795991	A	0.877751705850083	0	lncRNA	11495-1_{1..293}	lnc-ARID2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARID2-2:1	chr12	 46805933	 46806225	+	lnc-ARID2-2	lnc-ARID2-2:1	XLOC_009724	linc-FAM113B-4	NA	NA	NA	inter
CUST_5795_PI429285431	8.352448	P	8.28752	P	1.04603273455571	0	lncRNA	5717-1_{1..2110}	"transcript_id ""ENST00000583179.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583179.1"" | genecode_v17"	chr17	 25988575	 25990684	-	ENSG00000265788.1	ENST00000583179.1	RP11-19P22.5	RP11-19P22.5-001	NA	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10"	NA	inter
CUST_35847_PI429285431	5.084898	P	5.2579722	P	0.886950686756356	0	lncRNA	37246-2_{3001..6000}	n344517|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_65|NULL|-1.3509700|-0.3193190	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344517|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_65|NULL|-1.3509700|-0.3193190	chr1	246937562	246940561	+	NA	NA	NA	NA	LOC100130097	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50chr1:246935180-246948062"	NA	inter
CUST_50800_PI429285431	0.9171787	A	0.9058378	A	1.00789189095434	0	lncRNA	54454-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00004945 range=chr11:29319915-29339844 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004945 range=chr11:29319915-29339844 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	 29319915	 29322914	-	NA	NA	NA	NA	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	inter
CUST_6657_PI429285431	0.9194196	A	1.6324228	A	0.610048902002846	0	lncRNA	6603-1_{1..630}	"transcript_id ""ENST00000593272.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593272.1"" | genecode_v17"	chr20	 21068245	 21068874	-	ENSG00000225127.2	ENST00000593272.1	LINC00237	LINC00237-004	PLK1S1	NA	chr20:21095322-21096999	inter
CUST_5461_PI429285431	1.1630203	A	1.7522658	A	0.664690435668583	0	lncRNA	5395-1_{1..506}	"transcript_id ""ENST00000567624.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567624.1"" | genecode_v17"	chr16	 24249303	 24249808	+	ENSG00000260264.1	ENST00000567624.1	AC004125.3	AC004125.3-002	CACNG3	NA	chr16:24266874-24268866	inter
CUST_20595_PI429285431	9.683158	P	9.930986	P	0.842163351445767	0	lncRNA	22234-1_{1..733}	lnc-C16orf85-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf85-1:1	chr16	 88597340	 88598072	-	lnc-C16orf85-1	lnc-C16orf85-1:1	ENSG00000261744.1	RP11-21B21.4	ZFPM1	NA	chr16:88587340-88601574	inner
CUST_9237_PI429285431	8.799352	P	8.701936	P	1.06985553542957	0	lncRNA	10747-1_{1..1385}	lnc-CAMKK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CAMKK2-1:1	chr12	122225927	122227311	-	lnc-CAMKK2-1	lnc-CAMKK2-1:1	ENSG00000214271	AC084018.1	TMEM120B	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-24.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60chr12:122215927-122219974"	NA	inner
CUST_36331_PI429285431	4.3462276	P	4.586109	P	0.846814923832105	0	lncRNA	37562-1_{1..722}	n344858|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_407|NULL|-1.2825600|-0.3254441	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344858|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_407|NULL|-1.2825600|-0.3254441	chr5	149866542	149867263	-	NA	NA	NA	NA	NDST1	NA	chr5:149887674-149889153	inter
CUST_45195_PI429285431	10.177783	P	10.64525	P	0.723233294615836	0	lncRNA	49661-3_{6001..6125}	"gi|239582729|ref|NR_027765.1| Homo sapiens SET binding factor 1 pseudogene 1 (SBF1P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239582729|ref|NR_027765.1| Homo sapiens SET binding factor 1 pseudogene 1 (SBF1P1), non-coding RNA"	Chr8	 56367757	 56367881	-	100133234	NR_027765.1	NA	NA	NA	NA	NA	inter
CUST_35969_PI429285431	7.554306	P	7.750695	P	0.872732240899895	0	lncRNA	37318-1_{1..537}	n344593|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_141|NULL|-1.2929500|-0.1897497	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344593|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_141|NULL|-1.2929500|-0.1897497	chr12	 46777461	 46777997	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25059_PI429285431	6.712897	P	6.784059	P	0.951871017048932	0	lncRNA	26597-1_{1..3000}	lnc-C10orf116-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf116-1:3	chr10	 88768112	 88771111	+	lnc-C10orf116-1	lnc-C10orf116-1:3	ENSG00000151303.10	AGAP11	AGAP11	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70chr10:88758112-88769960"	NA	inner
CUST_28597_PI429285431	0.9203035	A	0.9161148	A	1.00290760450122	0	lncRNA	30278-1_{1..622}	n325959|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048267|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048267|-0.2218400|-0.4617608	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325959|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048267|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048267|-0.2218400|-0.4617608	chr10	 65466110	 65466731	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.81;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80"	NA	inter
CUST_34014_PI429285431	0.9256902	A	0.9255693	A	1.00008380500557	0	lncRNA	35549-1_{1..3000}	n340830|CR749847|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3294|NULL|1.1629600|-0.2764464	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340830|CR749847|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3294|NULL|1.1629600|-0.2764464	chr6	  6680541	  6683540	-	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00"	NA	inter
CUST_11778_PI429285431	7.7413783	P	7.9257884	P	0.880008826997004	0	lncRNA	13357-1_{1..554}	lnc-NFATC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NFATC1-1:1	chr18	 77346640	 77347193	+	lnc-NFATC1-1	lnc-NFATC1-1:1	XLOC_012734	linc-CTDP1	NA	NA	NA	inter
CUST_26462_PI429285431	0.9237379	A	0.9132722	A	1.00728064640833	0	lncRNA	27970-1_{1..618}	lnc-IDS-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IDS-1:12	chrX	148614417	148615034	-	lnc-IDS-1	lnc-IDS-1:12	ENSG00000241489.2	AF011889.5	CXorf40A	NA	chrX:148622519-148624476	inter
CUST_32266_PI429285431	9.071463	P	8.174565	P	1.86205798562171	0	lncRNA	33955-1_{1..1362}	n338844|BC019618|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1267|NULL|-0.8659980|-0.2808743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338844|BC019618|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1267|NULL|-0.8659980|-0.2808743	chr12	  3048888	  3050249	-	NA	NA	NA	NA	TULP3	"hg19_refFlat_TULP3:range=chr12:3000114-30498925'pad=0,hg19_refFlat_TULP3:range=chr12:3000114-30498925'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.70chr12:3038888-3050306"	NA	inner
CUST_1540_PI429285431	1.5931507	A	1.8789287	A	0.820299128027612	0	lncRNA	1527-1_{1..755}	"transcript_id ""ENST00000495159.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000495159.1"" | genecode_v17"	chr3	166287481	166288235	-	ENSG00000244321.1	ENST00000495159.1	RP11-450H5.1	RP11-450H5.1-001	NA	NA	NA	inter
CUST_25195_PI429285431	1.7093155	A	1.6138853	A	1.06838394400951	0	lncRNA	26726-1_{1..373}	lnc-C11orf44-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C11orf44-3:1	chr11	132154660	132155032	+	lnc-C11orf44-3	lnc-C11orf44-3:1	ENSG00000238262.1	NTM-IT3	NTM	NA	chr11:132144660-132164975	inner
CUST_24177_PI429285431	2.52228	A	2.668668	A	0.903509703174131	0	lncRNA	25728-1_{1..202}	lnc-PAEP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PAEP-2:1	chr9	138507208	138507409	+	lnc-PAEP-2	lnc-PAEP-2:1	ENSG00000236543.1	RP11-98L5.5	GLT6D1	NA	chr9:138497208-138517354	inter
CUST_28620_PI429285431	0.9259511	A	0.92066824	A	1.00366851209301	0	lncRNA	30304-1_{1..915}	n325988|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047741|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047741|-1.2544000|-0.2967964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325988|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047741|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047741|-1.2544000|-0.2967964	chr10	 44107711	 44108625	-	NA	NA	NA	NA	ZNF485	NA	chr10:44100294-44113352	inner
LNCA_21_P0008450	0.9655186	A	0.9289564	A	1.02566684941307	0	lncRNA	TCONS_00022773	NA	NA	NA	NA	XLOC_011057	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011057), lincRNA [TCONS_00022773]"	chr14:67652287-67649711	hs|14q23.3	Agilent_HUMAN_G3V2	TCONS_00022773	TCONS_00022773	chr14	 67649711	 67652287	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4057_PI429285431	2.442155	A	2.5686052	A	0.916082731998139	0	lncRNA	4019-1_{1..570}	"transcript_id ""ENST00000511947.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511947.2"" | genecode_v17"	chr11	 95215570	 95216139	+	ENSG00000250390.2	ENST00000511947.2	RP11-338H14.1	RP11-338H14.1-001	NA	NA	NA	inter
CUST_18044_PI429285431	1.6105857	A	1.3586053	A	1.19084067086914	0	lncRNA	19780-1_{1..406}	lnc-TSSK3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSSK3-1:1	chr1	 32814007	 32814412	+	lnc-TSSK3-1	lnc-TSSK3-1:1	XLOC_000129	linc-TSSK3-2	NA	NA	NA	inter
CUST_12409_PI429285431	0.9298874	A	0.92557544	A	1.00299329390112	0	lncRNA	14022-1_{1..688}	lnc-ANKRD50-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD50-4:2	chr4	124949130	124949817	-	lnc-ANKRD50-4	lnc-ANKRD50-4:2	XLOC_004061	linc-NUDT6-2	NA	NA	NA	inter
CUST_27907_PI429285431	6.7180524	P	6.7330275	P	0.989673737407866	0	lncRNA	29504-1_{1..668}	n325147|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330898|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330898|-1.0914800|-0.4289913	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325147|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330898|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330898|-1.0914800|-0.4289913	chr2	126185015	126185682	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17571_PI429285431	3.3742046	P	3.9894726	P	0.652808614303462	0	lncRNA	19300-1_{1..443}	lnc-FGF23-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGF23-3:1	chr12	  4320705	  4321147	-	lnc-FGF23-3	lnc-FGF23-3:1	XLOC_009986	linc-PARP11-5	NA	NA	NA	inter
LNCA_21_P0007171	0.9924457	A	0.9506722	A	1.02937846055597	0	lncRNA	TCONS_00019214	NA	NA	NA	NA	XLOC_009046	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009046), lincRNA [TCONS_00019214]"	chr11:6678213-6678272	hs|11p15.4	Agilent_HUMAN_G3V2	TCONS_00019214	TCONS_00019214	chr11	  6678213	  6678272	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3223631	9.746939	P	9.74664	P	1.00020727248496	0	lncRNA	XR_132538	XR_132538	XR_132538	100288292	Hs.520384	LOC100288292	putative uncharacterized protein FLJ44672-like	NA	THC2481823	NA	"PREDICTED: Homo sapiens putative uncharacterized protein FLJ44672-like (LOC100288292), miscRNA [XR_132538]"	chr7:63224834-63224893	hs|7q11.21	Agilent_HUMAN_G3V2	XR_132538	XR_132538	chr7	 63224834	 63224893	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21936_PI429285431	3.5640073	P	3.7354105	P	0.887978591617927	0	lncRNA	23544-1_{1..574}	lnc-KCNMB1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNMB1-3:1	chr5	170215559	170216132	-	lnc-KCNMB1-3	lnc-KCNMB1-3:1	ENSG00000253348.1	MIR4454	GABRP	NA	chr5:170210723-170225654	inner
LNCA_21_P0011194	1.680425	A	0.96398157	A	1.64312635891947	0	lncRNA	TCONS_l2_00007343	NA	NA	NA	NA	XLOC_l2_004115	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004115), lincRNA [TCONS_l2_00007343]"	chr13:114581600-114581541	hs|13q34	Agilent_HUMAN_G3V2	TCONS_l2_00007343	TCONS_l2_00007343	chr13	114581541	114581600	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46277_PI429285431	1.1607062	A	0.9151601	A	1.18554144626584	0	lncRNA	50515-1_{1..2159}	"gi|337298468|ref|NR_038971.1| Homo sapiens long intergenic non-protein coding RNA 641 (LINC00641), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|337298468|ref|NR_038971.1| Homo sapiens long intergenic non-protein coding RNA 641 (LINC00641), transcript variant 2, non-coding RNA"	Chr14	 21668238	 21670396	-	283624	NR_038971.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60"	NA	inter
CUST_38860_PI429285431	2.0161693	A	1.8131076	A	1.15113872123314	0	lncRNA	39850-1_{1..2977}	n384727|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kug.1||1.0720500|-0.2862092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384727|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kug.1||1.0720500|-0.2862092	chr5	126381050	126384026	-	NA	NA	NA	NA	C5orf63	NA	chr5:126378250-126409184	inner
CUST_9210_PI429285431	0.96031284	A	0.926614	A	1.02363319653182	0	lncRNA	10721-1_{1..2449}	lnc-THBS4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THBS4-1:1	chr5	 79286015	 79288463	+	lnc-THBS4-1	lnc-THBS4-1:1	ENSG00000244801	ENST00000499230	MTX3	"hg19_refFlat_MTX3:range=chr5:79279507-792860275'pad=0,hg19_refFlat_MTX3:range=chr5:79279507-792860275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MTX3:range=chr5:79279610-792870615'pad=0,hg19_refFlat_MTX3:range=chr5:79279610-792870615'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60chr5:79276015-79287088"	NA	inner
CUST_4741_PI429285431	0.89956033	A	1.2123284	M	0.805095555688399	0	lncRNA	4685-1_{1..478}	"transcript_id ""ENST00000533984.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533984.1"" | genecode_v17"	chr14	 21492331	 21492808	+	ENSG00000258604.1	ENST00000533984.1	AL161668.5	AL161668.5-001	RNASE13	NA	chr14:21500979-21502944	inner
CUST_20742_PI429285431	3.582786	P	4.28747	P	0.613576868417602	0	lncRNA	22376-1_{1..505}	lnc-CCDC117-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC117-1:1	chr22	 29244379	 29244883	+	lnc-CCDC117-1	lnc-CCDC117-1:1	ENSG00000226471.2	CTA-292E10.6	NA	NA	NA	inter
CUST_49900_PI429285431	0.9349341	A	1.0286897	A	0.937080179654977	0	lncRNA	53649-1_{1..284}	hg19_lincRNAsTranscripts_TCONS_l2_00026075 range=chr7:80804827-80819293 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026075 range=chr7:80804827-80819293 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 80804827	 80805110	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45226_PI429285431	1.0071954	A	0.9997131	A	1.00519980746582	0	lncRNA	49683-2_{3001..3754}	"gi|375493488|ref|NR_046346.1| Homo sapiens ganglioside induced differentiation associated protein 1 (GDAP1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375493488|ref|NR_046346.1| Homo sapiens ganglioside induced differentiation associated protein 1 (GDAP1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_046346.1	NA	NA	NA	NA	NA	Unknown
CUST_14038_PI429285431	1.2263361	A	1.0743744	A	1.11107923184653	0	lncRNA	15684-1_{1..746}	lnc-ATP6AP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP6AP2-2:1	chrX	 40140603	 40141348	+	lnc-ATP6AP2-2	lnc-ATP6AP2-2:1	XLOC_007960	linc-ATP6AP2-1	NA	NA	NA	inter
CUST_28980_PI429285431	1.0828714	A	1.2474663	A	0.892179002693403	0	lncRNA	30701-1_{1..410}	n326461|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000034371|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000034371|-1.3873900|-0.4524267	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326461|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000034371|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000034371|-1.3873900|-0.4524267	chr1	119344763	119345172	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15314_PI429285431	9.8688965	P	10.242712	P	0.771738775537597	0	lncRNA	16993-1_{1..369}	lnc-EPHB4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPHB4-1:1	chr7	100450136	100450504	-	lnc-EPHB4-1	lnc-EPHB4-1:1	XLOC_006544	linc-EPHB4	SLC12A9	NA	chr7:100450358-100460238	inter
CUST_39999_PI429285431	1.2721769	A	2.3648887	A	0.468879204536087	0	lncRNA	40864-1_{1..3000}	n407125|NR_024872|lncRNA|Homosapiens||RefGeneNoncode|NR_024872||0.2543690|-0.2383501	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407125|NR_024872|lncRNA|Homosapiens||RefGeneNoncode|NR_024872||0.2543690|-0.2383501	chr9	 37877571	 37880570	-	NA	NA	NA	NA	MCART1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PAICS:range=chr4:57302479-573257045'pad=0,hg19_refFlat_PAICS:range=chr4:57302479-573257045'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30chr9:37877572-37904350"	NA	inter
CUST_3564_PI429285431	8.090346	P	8.435868	P	0.787023162099712	0	lncRNA	3534-1_{1..527}	"transcript_id ""ENST00000452377.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452377.1"" | genecode_v17"	chr9	138096568	138097094	-	ENSG00000227958.1	ENST00000452377.1	RP11-399H11.3	RP11-399H11.3-001	NA	NA	NA	inter
CUST_30041_PI429285431	5.5206137	P	5.95144	P	0.741836778443719	0	lncRNA	31810-1_{1..217}	n334535|U44848|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219961|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219961|-1.0092700|-0.4324546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334535|U44848|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219961|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219961|-1.0092700|-0.4324546	chr7	129396350	129396566	+	NA	NA	NA	NA	NRF1	NA	chr7:129386350-129396922	inner
CUST_6788_PI429285431	0.9173917	A	0.9083765	A	1.00626842532218	0	lncRNA	6736-1_{1..478}	"transcript_id ""ENST00000432412.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432412.1"" | genecode_v17"	chr21	 19394687	 19395164	-	ENSG00000227330.1	ENST00000432412.1	AP000998.2	AP000998.2-001	NA	NA	NA	inner
CUST_4210_PI429285431	0.960426	A	0.9235656	A	1.02587887306149	0	lncRNA	4169-1_{1..427}	"transcript_id ""ENST00000538640.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000538640.1"" | genecode_v17"	chr12	 27857501	 27857927	+	ENSG00000256504.1	ENST00000538640.1	RP11-1060J15.7	RP11-1060J15.7-001	PPFIBP1	NA	chr12:27847501-27848497	inter
CUST_46680_PI429285431	8.290972	P	7.5314035	P	1.69298418925882	0	lncRNA	50846-3_{6001..8336}	"gi|224586819|ref|NR_027265.1| Homo sapiens golgi glycoprotein 1 (GLG1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224586819|ref|NR_027265.1| Homo sapiens golgi glycoprotein 1 (GLG1), transcript variant 5, non-coding RNA"	Chr16	 74487325	 74489660	-	2734	NR_027265.1	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50"	NA	inter
CUST_5236_PI429285431	1.0593181	A	1.1094697	A	0.965834832593495	0	lncRNA	5177-1_{1..1135}	"transcript_id ""ENST00000568345.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568345.1"" | genecode_v17"	chr15	 72757469	 72758603	-	ENSG00000261187.1	ENST00000568345.1	RP11-1007O24.2	RP11-1007O24.2-001	ARIH1	NA	chr15:72766667-72768603	inter
CUST_29131_PI429285431	1.2234014	A	1.454014	A	0.852272921122435	0	lncRNA	30870-1_{1..2283}	n326635|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001202|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001202|0.0518104|-0.2999288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326635|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001202|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001202|0.0518104|-0.2999288	chr1	 38447292	 38449574	-	NA	NA	NA	NA	FHL3	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40chr1:38462442-38463026"	NA	inner
CUST_45256_PI429285431	6.3744707	P	5.254485	P	2.17344818171679	0	lncRNA	49709-1_{1..2027}	"gi|357933638|ref|NR_045555.1| Homo sapiens ectonucleotide pyrophosphatase/phosphodiesterase 2 (ENPP2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|357933638|ref|NR_045555.1| Homo sapiens ectonucleotide pyrophosphatase/phosphodiesterase 2 (ENPP2), transcript variant 4, non-coding RNA"	Chr8	120569317	120571343	-	5168	NR_045555.1	NA	NA	NA	NA	NA	inter
CUST_24264_PI429285431	6.0693374	P	6.3745704	P	0.809311499519785	0	lncRNA	25815-1_{1..563}	lnc-AC007431.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC007431.1.1-2:1	chr17	 55600917	 55601479	-	lnc-AC007431.1.1-2	lnc-AC007431.1.1-2:1	ENSG00000266100.1	RP11-118E18.2	MSI2	NA	chr17:55590917-55610958	inner
CUST_43497_PI429285431	0.9227692	A	0.9096977	A	1.00910164370651	0	lncRNA	48289-1_{1..1071}	"gi|219521855|ref|NR_026546.1| Homo sapiens ankyrin repeat and SOCS box containing 17 (ASB17), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219521855|ref|NR_026546.1| Homo sapiens ankyrin repeat and SOCS box containing 17 (ASB17), transcript variant 2, non-coding RNA"	Chr1	 76384558	 76385628	-	127247	NR_026546.1	NA	NA	NA	NA	NA	inter
CUST_40503_PI429285431	8.749279	P	9.137462	P	0.764091332356504	0	lncRNA	41268-1_{1..1609}	n409438|NR_033823_7|lncRNA|Homosapiens||RefGeneNoncode|NR_033823_7||6.1180100|-0.2064532	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409438|NR_033823_7|lncRNA|Homosapiens||RefGeneNoncode|NR_033823_7||6.1180100|-0.2064532	chr6	 30594612	 30596220	+	NA	NA	NA	NA	ATAT1	NA	chr6:30594613-30614598	inner
CUST_44851_PI429285431	9.430826	P	9.002602	P	1.34557611313637	0	lncRNA	49378-1_{1..1206}	"gi|399567843|ref|NR_073093.1| Homo sapiens mitochondrial pyruvate carrier 1 (MPC1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|399567843|ref|NR_073093.1| Homo sapiens mitochondrial pyruvate carrier 1 (MPC1), transcript variant 3, non-coding RNA"	Chr6	166778407	166779612	-	51660	NR_073093.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0012132	0.92741686	A	2.6057787	A	0.312437203950908	0	lncRNA	TCONS_l2_00016423	NA	NA	NA	NA	XLOC_l2_008731	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008731), lincRNA [TCONS_l2_00016423]"	chr20:1399580-1398164	hs|20p13	Agilent_HUMAN_G3V2	TCONS_l2_00016423	TCONS_l2_00016423	chr20	  1398164	  1399580	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1845_PI429285431	0.9123045	A	0.9255724	A	0.990845551977286	0	lncRNA	1835-1_{1..300}	"transcript_id ""ENST00000508010.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508010.1"" | genecode_v17"	chr4	112725574	112725873	-	ENSG00000248432.1	ENST00000508010.1	RP11-269F21.2	RP11-269F21.2-001	NA	NA	NA	inter
CUST_44548_PI429285431	7.638206	P	6.238076	P	2.63925363168896	0	lncRNA	49133-3_{6001..7736}	"gi|402478649|ref|NR_073104.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402478649|ref|NR_073104.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 3, non-coding RNA"	Chr5	 52291156	 52292891	+	3673	NR_073104.1	NA	NA	NA	"hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.21;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70"	NA	inter
CUST_47935_PI429285431	2.5737276	A	3.0405295	A	0.723566790847724	0	lncRNA	51826-1_{1..1547}	"gi|410172317|ref|XR_171708.1| PREDICTED: Homo sapiens chromosome 8 open reading frame 49 (C8orf49), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172317|ref|XR_171708.1| PREDICTED: Homo sapiens chromosome 8 open reading frame 49 (C8orf49), misc_RNA"	NA	NA	NA	NA	NA	XR_171708.1	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10"	NA	Unknown
CUST_7845_PI429285431	1.1206442	A	1.3352247	A	0.861796712430811	0	lncRNA	9469-1_{1..1122}	lnc-RPS4XP21-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS4XP21-1:1	chr19	 34819737	 34820858	-	lnc-RPS4XP21-1	lnc-RPS4XP21-1:1	ENSG00000249886	ENST00000514883	KIAA0355	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40chr19:34809737-34830103"	NA	inner
CUST_40567_PI429285431	0.91254187	A	0.9191157	A	0.995453733966184	0	lncRNA	41323-1_{1..3000}	n410004|NR_036431|lncRNA|Homosapiens||RefGeneNoncode|NR_036431||4.9575000|-0.3484917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410004|NR_036431|lncRNA|Homosapiens||RefGeneNoncode|NR_036431||4.9575000|-0.3484917	chrX	101137259	101140258	-	NA	NA	NA	NA	ZMAT1	NA	chrX:101137260-101155193	inter
CUST_20193_PI429285431	5.839225	P	6.010092	P	0.88830868397952	0	lncRNA	21836-1_{1..399}	lnc-IL23A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL23A-2:1	chr12	 56708313	 56708711	+	lnc-IL23A-2	lnc-IL23A-2:1	ENSG00000257303.1	RP11-977G19.11	PAN2	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr12:56710007-56718572"	NA	inner
CUST_40199_PI429285431	0.922012	A	1.0156074	A	0.937184240856877	0	lncRNA	41030-2_{3001..4914}	n408022|NR_027782|lncRNA|Homosapiens||RefGeneNoncode|NR_027782||0.5056040|-0.2634745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408022|NR_027782|lncRNA|Homosapiens||RefGeneNoncode|NR_027782||0.5056040|-0.2634745	chr17	   131327	   133240	-	NA	NA	NA	NA	RPH3AL	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80chr17:118327-193214"	NA	inner
CUST_1780_PI429285431	0.90783083	A	0.9103329	A	0.998267200267948	0	lncRNA	1766-1_{1..1061}	"transcript_id ""ENST00000513551.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513551.1"" | genecode_v17"	chr4	 59646791	 59647851	-	ENSG00000251339.1	ENST00000513551.1	RP11-506N2.1	RP11-506N2.1-004	NA	NA	NA	inter
CUST_28215_PI429285431	7.282876	P	7.3427315	P	0.959360203808334	0	lncRNA	29845-1_{1..571}	n325499|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322419|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322419|-1.0926100|-0.2420989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325499|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322419|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322419|-1.0926100|-0.2420989	chr2	   682082	   682652	-	NA	NA	NA	NA	TMEM18	NA	chr2:672082-677439	inter
CUST_2651_PI429285431	0.90782094	A	0.91808474	A	0.992910922864372	0	lncRNA	2637-2_{3001..3996}	"transcript_id ""ENST00000565399.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565399.1"" | genecode_v17"	chr6	141771148	141772143	+	ENSG00000259828.1	ENST00000565399.1	RP11-63E9.1	RP11-63E9.1-001	NA	NA	NA	inter
CUST_29650_PI429285431	13.546672	P	13.121697	P	1.34254923797321	0	lncRNA	31412-1_{1..332}	n333258|AF540057|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000081460|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000081460|1.5107300|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333258|AF540057|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000081460|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000081460|1.5107300|-1.0000000	chr4	 57907003	 57907334	-	NA	NA	NA	NA	IGFBP7	NA	chr4:57897244-57976539	inter
CUST_45383_PI429285431	3.6916473	P	0.9010124	A	6.91934223874385	0	lncRNA	49815-2_{3001..5130}	"gi|373938431|ref|NR_046106.1| Homo sapiens nucleolar protein 8 (NOL8), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373938431|ref|NR_046106.1| Homo sapiens nucleolar protein 8 (NOL8), transcript variant 3, non-coding RNA"	Chr9	 95062640	 95064769	-	55035	NR_046106.1	NA	NA	NA	NA	NA	inter
CUST_51170_PI429285431	1.403432	A	0.90780187	A	1.40993644260868	0	lncRNA	54791-1_{1..558}	hg19_lincRNAsTranscripts_TCONS_l2_00007759 range=chr14:62037134-62124479 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007759 range=chr14:62037134-62124479 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 62037134	 62037691	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18613_PI429285431	0.91223365	A	1.0355879	A	0.918050709667938	0	lncRNA	20320-1_{1..2236}	lnc-CCDC37-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCDC37-5:3	chr3	125927169	125929404	+	lnc-CCDC37-5	lnc-CCDC37-5:3	ENSG00000246022	ALDH1L1-AS2	NA	NA	NA	inter
CUST_25527_PI429285431	0.9419739	A	1.2594973	A	0.802446213843734	0	lncRNA	27057-1_{1..567}	lnc-TP53I11-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TP53I11-5:1	chr11	 44629556	 44630122	-	lnc-TP53I11-5	lnc-TP53I11-5:1	ENSG00000255092.1	RP11-58K22.4	CD82	NA	chr11:44619556-44639651	inner
CUST_4601_PI429285431	3.6523857	P	3.5613453	P	1.06513803019166	0	lncRNA	4550-1_{1..760}	"transcript_id ""ENST00000604485.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604485.1"" | genecode_v17"	chr13	 43384502	 43385261	-	ENSG00000271216.1	ENST00000604485.1	RP11-366O17.4	RP11-366O17.4-001	NA	NA	NA	inter
CUST_50596_PI429285431	6.7044086	P	6.7011123	P	1.00228743324398	0	lncRNA	54285-1_{1..844}	hg19_lincRNAsTranscripts_TCONS_l2_00003640 range=chr10:81451431-81574579 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003640 range=chr10:81451431-81574579 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 81451431	 81452274	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4643_PI429285431	4.5239663	P	4.6226315	P	0.933896645126314	0	lncRNA	4589-1_{1..282}	"transcript_id ""ENST00000443621.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443621.1"" | genecode_v17"	chr13	 73987610	 73987891	-	ENSG00000224853.1	ENST00000443621.1	LINC00393	LINC00393-001	NA	NA	NA	inter
CUST_32592_PI429285431	0.9199998	A	0.91240215	A	1.00528018095432	0	lncRNA	34253-1_{1..1020}	n339211|BC039549|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1643|NULL|-0.9357690|-0.1621954	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339211|BC039549|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1643|NULL|-0.9357690|-0.1621954	chr16	 50890523	 50891542	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38460_PI429285431	10.156765	P	9.785682	P	1.29332333621138	0	lncRNA	39479-2_{3001..4188}	n382907|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002cqc.1||7.9443000|-0.1292098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382907|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002cqc.1||7.9443000|-0.1292098	chr16	  2393922	  2395109	+	NA	NA	NA	NA	ABCA3	NA	chr16:2380922-2390747	inter
CUST_30269_PI429285431	6.1456943	P	6.213052	P	0.954384355941682	0	lncRNA	32044-1_{1..547}	n335155|AY315621|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251687|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251687|2.1098300|-0.2189871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335155|AY315621|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251687|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251687|2.1098300|-0.2189871	chr17	 35641739	 35642285	-	NA	NA	NA	NA	ACACA	NA	chr17:35631739-35726059	inner
CUST_47112_PI429285431	1.3166736	A	0.902877	A	1.33218699195427	0	lncRNA	51194-1_{1..1068}	"gi|338797718|ref|NR_040027.1| Homo sapiens ZNF790 antisense RNA 1 (ZNF790-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338797718|ref|NR_040027.1| Homo sapiens ZNF790 antisense RNA 1 (ZNF790-AS1), transcript variant 1, non-coding RNA"	Chr19	 37288452	 37289519	+	284408	NR_040027.1	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53077401-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53077401-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_ZNF841:range=chr19:52568360-525880545'pad=0,hg19_refFlat_ZNF841:range=chr19:52568360-525880545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF677:range=chr19:53740225-537548035'pad=0,hg19_refFlat_ZNF677:range=chr19:53740225-537548035'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF761:range=chr19:53950522-539600025'pad=0,hg19_refFlat_ZNF761:range=chr19:53950522-539600025'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ZNF320:range=chr19:53383849-533935085'pad=0,hg19_refFlat_ZNF320:range=chr19:53383849-533935085'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF420:range=chr19:37580021-376199605'pad=0,hg19_refFlat_ZNF420:range=chr19:37580021-376199605'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.10;hg19_refFlat_ZNF695:range=chr1:247150269-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247150269-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_ZNF571:range=chr19:38055500-380775775'pad=0,hg19_refFlat_ZNF571:range=chr19:38055500-380775775'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_ZNF845:range=chr19:53844561-538568415'pad=0,hg19_refFlat_ZNF845:range=chr19:53844561-538568415'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90;hg19_refFlat_ZNF540:range=chr19:38089349-381041645'pad=0,hg19_refFlat_ZNF540:range=chr19:38089349-381041645'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_ZNF780B:range=chr19:40540264-405562395'pad=0,hg19_refFlat_ZNF780B:range=chr19:40540264-405562395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF850:range=chr19:37238669-372535085'pad=0,hg19_refFlat_ZNF850:range=chr19:37238669-372535085'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF566:range=chr19:36939879-369674595'pad=0,hg19_refFlat_ZNF566:range=chr19:36939879-369674595'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00;hg19_refFlat_ZNF383:range=chr19:37721356-377345665'pad=0,hg19_refFlat_ZNF383:range=chr19:37721356-377345665'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ZNF813:range=chr19:53987077-539953405'pad=0,hg19_refFlat_ZNF813:range=chr19:53987077-539953405'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ZNF461:range=chr19:37129555-371556085'pad=0,hg19_refFlat_ZNF461:range=chr19:37129555-371556085'pad=0 3'pad=0 strand=- repeatMasking=none,-64.30;hg19_refFlat_ZNF780A:range=chr19:40578764-405951695'pad=0,hg19_refFlat_ZNF780A:range=chr19:40578764-405951695'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF780A:range=chr19:40580423-405906605'pad=0,hg19_refFlat_ZNF780A:range=chr19:40580423-405906605'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZFP30:range=chr19:38125882-381387235'pad=0,hg19_refFlat_ZFP30:range=chr19:38125882-381387235'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_ZNF347:range=chr19:53643561-536570005'pad=0,hg19_refFlat_ZNF347:range=chr19:53643561-536570005'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF790:range=chr19:37309335-373165215'pad=0,hg19_refFlat_ZNF790:range=chr19:37309335-373165215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF765:range=chr19:53901269-539123805'pad=0,hg19_refFlat_ZNF765:range=chr19:53901269-539123805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40"	NA	inter
CUST_10080_PI429285431	3.1006913	P	3.6406584	P	0.687786593549457	0	lncRNA	11607-1_{1..1314}	lnc-C6orf112-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C6orf112-2:1	chr6	105926570	105927883	+	lnc-C6orf112-2	lnc-C6orf112-2:1	XLOC_005409	linc-PRDM1-2	NA	NA	NA	inter
CUST_1615_PI429285431	0.9259654	A	0.9104613	A	1.01080457556861	0	lncRNA	1601-1_{1..910}	"transcript_id ""ENST00000415869.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000415869.1"" | genecode_v17"	chr3	193920805	193921714	-	ENSG00000225742.1	ENST00000415869.1	RP11-513G11.4	RP11-513G11.4-001	NA	NA	NA	inter
CUST_619_PI429285431	5.888011	P	6.343381	P	0.729323102679416	0	lncRNA	611-1_{1..504}	"transcript_id ""ENST00000444330.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444330.1"" | genecode_v17"	chr1	241587592	241588095	+	ENSG00000225554.1	ENST00000444330.1	RP11-527D7.1	RP11-527D7.1-001	NA	NA	NA	inter
CUST_9963_PI429285431	1.3082817	A	1.0368297	A	1.20702202353567	0	lncRNA	11487-1_{1..453}	lnc-MYEF2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-MYEF2-4:2	chr15	 48138326	 48138778	-	lnc-MYEF2-4	lnc-MYEF2-4:2	XLOC_011470	linc-SLC30A4-4	NA	NA	NA	inter
CUST_24587_PI429285431	2.9749386	A	4.1834264	P	0.432721947291061	0	lncRNA	26136-1_{1..1170}	lnc-SIRT4-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SIRT4-1:5	chr12	120650178	120651347	+	lnc-SIRT4-1	lnc-SIRT4-1:5	ENSG00000255857.1	RP1-278C19.3	PXN	"hg19_refFlat_PXN:range=chr12:120650117-1207034325'pad=0,hg19_refFlat_PXN:range=chr12:120650117-1207034325'pad=0 3'pad=0 strand=- repeatMasking=none,-96.10;hg19_refFlat_PXN:range=chr12:120650117-1206607595'pad=0,hg19_refFlat_PXN:range=chr12:120650117-1206607595'pad=0 3'pad=0 strand=- repeatMasking=none,-96.10chr12:120648250-120660941"	NA	inner
CUST_38874_PI429285431	3.1152704	A	1.8582119	A	2.39007932333821	0	lncRNA	39862-1_{1..3000}	n384770|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003lzy.3||1.2024400|-0.3897122	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384770|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003lzy.3||1.2024400|-0.3897122	chr5	167975499	167978498	-	NA	NA	NA	NA	PANK3	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20chr5:167982628-167989974"	NA	inter
LNCA_21_P0014823	7.2067723	P	7.3175635	P	0.926080043588938	0	lncRNA	XR_132669	XR_132669	XR_132669	NA	Hs.665981	LOC100287160	uncharacterized LOC100287160	NA	THC2632982	NA	"PREDICTED: Homo sapiens hypothetical LOC100287160 (LOC100287160), miscRNA [XR_132669]"	chr19:19855575-19855516	hs|19p13.11	Agilent_HUMAN_G3V2	XR_132669	XR_132669	chr19	 19855516	 19855575	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42258_PI429285431	7.172013	P	7.4459095	P	0.827082701834366	0	lncRNA	44677-1_{1..155}	ENST00000363443 ncrna:rRNA chromosome:GRCh37:20:5326652:5326806:-1 gene:ENSG00000200313 gene_biotype:rRNA transcript_biotype:rRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363443 ncrna:rRNA chromosome:GRCh37:20:5326652:5326806:-1 gene:ENSG00000200313 gene_biotype:rRNA transcript_biotype:rRNA	chr20	  5326652	  5326806	-	ENSG00000200313	ENST00000363443	NA	NA	NA	NA	NA	inter
CUST_31413_PI429285431	9.265681	P	9.350257	P	0.943061655738038	0	lncRNA	33185-1_{1..1503}	n337877|CR611990|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|260|NULL|-1.2206300|-0.1601939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337877|CR611990|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|260|NULL|-1.2206300|-0.1601939	chr1	 38509522	 38511024	-	NA	NA	NA	NA	POU3F1	NA	chr1:38509523-38512450	inner
CUST_17247_PI429285431	2.8768878	A	3.5039756	P	0.647482093554105	0	lncRNA	18965-1_{1..237}	lnc-SLC25A15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A15-1:1	chr13	 40918212	 40918448	+	lnc-SLC25A15-1	lnc-SLC25A15-1:1	XLOC_010357	linc-SLC25A15-1	NA	NA	NA	inter
CUST_6525_PI429285431	0.893438	A	0.88978535	A	1.00253503182218	0	lncRNA	6468-1_{1..467}	"transcript_id ""ENST00000483481.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000483481.2"" | genecode_v17"	chr19	 42041860	 42042326	+	ENSG00000270164.1	ENST00000483481.2	AC006129.4	AC006129.4-002	NA	NA	NA	inter
CUST_17644_PI429285431	2.8305879	A	2.5671651	A	1.20032310067522	0	lncRNA	19373-1_{1..1282}	lnc-ZNF492-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF492-2:1	chr19	 22702381	 22703662	+	lnc-ZNF492-2	lnc-ZNF492-2:1	XLOC_013013	linc-ZNF492-2	NA	NA	NA	inter
CUST_34923_PI429285431	0.9266707	A	0.8883262	A	1.02693473737247	0	lncRNA	36344-1_{1..2715}	n341840|AK095308|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4319|NULL|-1.1313300|-0.3603212	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341840|AK095308|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4319|NULL|-1.1313300|-0.3603212	chr12	 14889902	 14892616	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38139_PI429285431	6.8041143	P	3.6143613	P	9.12454740359683	0	lncRNA	39210-1_{1..2352}	n381294|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gla.1||-0.8629850|-0.2906600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381294|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gla.1||-0.8629850|-0.2906600	chr1	176812379	176814730	+	NA	NA	NA	NA	PAPPA2	NA	chr1:176802379-176811972	inter
CUST_24360_PI429285431	4.6837125	P	4.826324	P	0.905877891931079	0	lncRNA	25913-1_{1..481}	lnc-STK32C-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STK32C-1:2	chr10	133998469	133998949	-	lnc-STK32C-1	lnc-STK32C-1:2	ENSG00000235010.1	RP11-140A10.3	JAKMIP3	NA	chr10:133988469-133998313	inter
CUST_52186_PI429285431	2.0851731	A	1.9605448	A	1.09022680738269	0	lncRNA	55704-1_{1..1552}	hg19_lincRNAsTranscripts_TCONS_l2_00017661 range=chr22:25844064-25856603 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017661 range=chr22:25844064-25856603 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 25844064	 25845615	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
CUST_36281_PI429285431	5.440091	P	4.874503	P	1.47999058690806	0	lncRNA	37516-2_{3001..6000}	n344810|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_359|NULL|-1.3390700|-0.2842366	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344810|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_359|NULL|-1.3390700|-0.2842366	chr3	195402498	195405497	+	NA	NA	NA	NA	MUC20	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60chr3:195447753-195452174"	NA	inter
CUST_28406_PI429285431	0.90778583	A	0.90485734	A	1.0020319361769	0	lncRNA	30064-1_{1..431}	n325727|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331673|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331673|-0.4540510|-0.3068087	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325727|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331673|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331673|-0.4540510|-0.3068087	chr13	 50557560	 50557990	-	NA	NA	NA	NA	KCNRG	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr13:50589390-50593079"	NA	inter
LNCA_21_P0002703	0.92452896	A	0.90888894	A	1.01089981054626	0	lncRNA	BC015590	NA	BC015590	NA	Hs.382046	XLOC_002696	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002696), lincRNA [TCONS_00005416]"	chr3:70064045-70064104	hs|3p13	Agilent_HUMAN_G3V2	BC015590	BC015590	chr3	 70064045	 70064104	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1762_PI429285431	2.1685002	A	1.3030721	A	1.82188020498704	0	lncRNA	1747-2_{3001..4218}	"transcript_id ""ENST00000563286.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563286.1"" | genecode_v17"	chr4	 47845139	 47846356	-	ENSG00000259959.1	ENST00000563286.1	RP11-121C2.2	RP11-121C2.2-001	CORIN	NA	chr4:47832139-47840059	inter
CUST_4518_PI429285431	2.8765192	A	2.828661	A	1.03372912780676	0	lncRNA	4466-1_{1..353}	"transcript_id ""ENST00000536512.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536512.1"" | genecode_v17"	chr12	130531677	130532029	+	ENSG00000256298.1	ENST00000536512.1	RP11-474D1.1	RP11-474D1.1-001	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-16.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-59.70"	NA	inter
CUST_12397_PI429285431	3.9081411	P	4.0626225	P	0.898455279083745	0	lncRNA	14011-1_{1..3000}	lnc-TCF12-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF12-1:3	chr15	 57599740	 57602739	+	lnc-TCF12-1	lnc-TCF12-1:3	XLOC_011264	linc-CGNL1-2	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.61;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.81;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50"	NA	inter
CUST_27249_PI429285431	0.8997655	A	0.8919034	A	1.00546446848771	0	lncRNA	28799-1_{1..490}	n324392|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000125834|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000125834|-1.2258800|-0.5195126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324392|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000125834|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000125834|-1.2258800|-0.5195126	chr6	132453365	132453854	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42650_PI429285431	0.9284167	A	0.91546476	A	1.00901802021712	0	lncRNA	45543-1_{1..70}	ENST00000363044 ncrna:snoRNA chromosome:GRCh37:14:101439932:101440001:1 gene:ENSG00000199914 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363044 ncrna:snoRNA chromosome:GRCh37:14:101439932:101440001:1 gene:ENSG00000199914 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101439932	101440001	+	ENSG00000199914	ENST00000363044	NA	NA	NA	NA	NA	inter
CUST_13452_PI429285431	0.91890544	A	0.92025596	A	0.999064328883175	0	lncRNA	15090-1_{1..1218}	lnc-MYC-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYC-2:12	chr8	128944299	128945516	+	lnc-MYC-2	lnc-MYC-2:12	XLOC_006922	linc-EFR3A-7	NA	NA	NA	inter
CUST_10692_PI429285431	4.1576924	P	4.598564	P	0.736689405419928	0	lncRNA	12226-1_{1..643}	lnc-AC093726.6.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC093726.6.1-1:2	chr7	154806798	154807440	+	lnc-AC093726.6.1-1	lnc-AC093726.6.1-1:2	XLOC_006301	linc-HTR5A-1	NA	NA	NA	inter
CUST_47228_PI429285431	0.917957	A	0.9046916	A	1.00923727733147	0	lncRNA	51303-1_{1..2360}	"gi|408830571|ref|NR_073206.1| Homo sapiens sel-1 suppressor of lin-12-like 2 (C. elegans) (SEL1L2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|408830571|ref|NR_073206.1| Homo sapiens sel-1 suppressor of lin-12-like 2 (C. elegans) (SEL1L2), transcript variant 2, non-coding RNA"	Chr20	 13830044	 13832403	-	80343	NR_073206.1	NA	NA	NA	NA	NA	inter
CUST_46573_PI429285431	6.847352	P	6.7476587	P	1.07154564031894	0	lncRNA	50757-1_{1..2927}	"gi|295821179|ref|NR_033646.1| Homo sapiens lipase maturation factor 1 (LMF1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|295821179|ref|NR_033646.1| Homo sapiens lipase maturation factor 1 (LMF1), transcript variant 3, non-coding RNA"	Chr16	   903634	   906560	-	64788	NR_033646.1	NA	NA	NA	NA	NA	inter
CUST_48998_PI429285431	0.9201565	A	0.91730934	A	1.00197544956122	0	lncRNA	52830-2_{3001..4805}	hg19_lincRNAsTranscripts_TCONS_l2_00019716 range=chr3:197328987-197354685 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019716 range=chr3:197328987-197354685 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	197331987	197333791	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010189	0.92371887	A	0.9104104	A	1.00926740739856	0	lncRNA	ENST00000448063	NA	NA	NA	NA	XLOC_014029	NA	ENST00000448063	NA	NA	"BROAD Institute lincRNA (XLOC_014029), lincRNA [TCONS_00028890]"	chr21:25527845-25527786	hs|21q21.2	Agilent_HUMAN_G3V2	ENST00000448063	ENST00000448063	chr21	 25527786	 25527845	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37919_PI429285431	4.8170094	P	5.0973854	P	0.823376398194533	0	lncRNA	39008-1_{1..478}	n346460|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2010|NULL|-1.4115000|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346460|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2010|NULL|-1.4115000|-1.0000000	chr5	   785120	   785597	+	NA	NA	NA	NA	ZDHHC11	NA	chr5:795720-795956	inter
LNCA_21_P0006266	1.4784415	A	0.9109575	A	1.48193687961341	0	lncRNA	TCONS_00016317	NA	NA	NA	NA	XLOC_007686	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007686), lincRNA [TCONS_00016317]"	chr9:38072086-38071538	hs|9p13.2	Agilent_HUMAN_G3V2	TCONS_00016317	TCONS_00016317	chr9	 38071538	 38072086	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18809_PI429285431	0.8966755	A	0.8975133	A	0.999419449876601	0	lncRNA	20504-1_{1..197}	lnc-RNF144B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF144B-2:1	chr6	 19061036	 19061232	+	lnc-RNF144B-2	lnc-RNF144B-2:1	ENSG00000229973	RP1-239K6.1	NA	NA	NA	inter
CUST_43887_PI429285431	7.1197433	P	6.985169	P	1.09776884431513	0	lncRNA	48606-1_{1..2484}	"gi|375268689|ref|NR_046322.1| Homo sapiens uncharacterized LOC285033 (LOC285033), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|375268689|ref|NR_046322.1| Homo sapiens uncharacterized LOC285033 (LOC285033), non-coding RNA"	Chr2	 96874154	 96876637	+	285033	NR_046322.1	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00"	NA	inter
LNCA_21_P0002213	7.147124	P	7.1538014	P	0.995382273650811	0	lncRNA	TCONS_00003672	NA	NA	NA	NA	XLOC_001465	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001465), lincRNA [TCONS_00003672]"	chr2:48392178-48392237	hs|2p16.3	Agilent_HUMAN_G3V2	TCONS_00003672	TCONS_00003672	chr2	 48392178	 48392237	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21223_PI429285431	0.91224	A	0.9091257	A	1.00216099986617	0	lncRNA	22848-1_{1..379}	lnc-FOXA1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXA1-1:2	chr14	 38028521	 38028899	-	lnc-FOXA1-1	lnc-FOXA1-1:2	ENSG00000259087.1	RP11-356O9.2	MIPOL1	NA	chr14:38018521-38020464	inter
CUST_13864_PI429285431	0.9273746	A	0.9038675	A	1.01642734927726	0	lncRNA	15508-1_{1..249}	lnc-PLXDC2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLXDC2-1:2	chr10	 20896006	 20896254	+	lnc-PLXDC2-1	lnc-PLXDC2-1:2	XLOC_008408	linc-MLLT10-2	NA	NA	NA	inter
CUST_38119_PI429285431	4.3559666	P	4.351735	P	1.00293742741924	0	lncRNA	39193-1_{1..709}	n381222|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ekp.3||3.0343300|-0.2029672	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381222|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ekp.3||3.0343300|-0.2029672	chr1	144212642	144213350	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38976_PI429285431	2.0491133	A	2.2171826	A	0.890032979402838	0	lncRNA	39960-1_{1..1015}	n385204|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tvo.2||1.7252200|-0.2683325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385204|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tvo.2||1.7252200|-0.2683325	chr7	 66657746	 66658760	-	NA	NA	NA	NA	TYW1	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30chr7:66647746-66704499"	NA	inner
CUST_43128_PI429285431	9.210047	P	9.608789	P	0.758519408080878	0	lncRNA	47942-1_{1..226}	ENST00000572209 havana:lincRNA chromosome:GRCh37:HSCHR20_1_CTG1:17853272:17858989:1 gene:ENSG00000262640 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000572209 havana:lincRNA chromosome:GRCh37:HSCHR20_1_CTG1:17853272:17858989:1 gene:ENSG00000262640 gene_biotype:lincRNA transcript_biotype:lincRNA	chrHSCHR20_1_CTG1	 17853272	 17853497	+	ENSG00000262640	ENST00000572209	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003369	2.115706	A	3.1929212	P	0.473942781486873	0	lncRNA	ENST00000508135	NA	NA	NA	NA	XLOC_003549	NA	ENST00000508135	NA	NA	"BROAD Institute lincRNA (XLOC_003549), lincRNA [TCONS_00007538]"	chr4:58590736-58590795	hs|4q12	Agilent_HUMAN_G3V2	ENST00000508135	ENST00000508135	chr4	 58590736	 58590795	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003867	0.9263196	A	1.5990348	A	0.627324929196361	0	lncRNA	TCONS_00008950	NA	NA	NA	NA	XLOC_003805	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003805), lincRNA [TCONS_00008950]"	chr4:185195350-185195409	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00008950	TCONS_00008950	chr4	185195350	185195409	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27139_PI429285431	5.7946634	P	5.7623005	P	1.02268574781338	0	lncRNA	28675-2_{3001..3288}	n324255|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325234|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325234|0.4577750|-0.1902053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324255|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325234|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325234|0.4577750|-0.1902053	chr7	  2726992	  2727279	-	NA	NA	NA	NA	AMZ1	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.61;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90chr7:2719163-2739148"	NA	inner
CUST_29519_PI429285431	0.9153788	A	0.9109925	A	1.00304497803424	0	lncRNA	31277-1_{1..394}	n332969|AF098751|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000068557_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000068557_10|-1.2840500|-0.3279814	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332969|AF098751|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000068557_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000068557_10|-1.2840500|-0.3279814	chr6	  2838499	  2838892	+	NA	NA	NA	NA	SERPINB1	"hg19_refFlat_SERPINB1:range=chr6:2833842-28408205'pad=0,hg19_refFlat_SERPINB1:range=chr6:2833842-28408205'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40chr6:2833733-2842081"	NA	inter
CUST_32299_PI429285431	4.107765	P	4.187643	P	0.946137652485588	0	lncRNA	33982-1_{1..1559}	n338875|AF038185|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1301|NULL|-1.2530800|-0.2251907	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n338875|AF038185|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1301|NULL|-1.2530800|-0.2251907	chr2	 70883915	 70885473	-	NA	NA	NA	NA	ADD2	NA	chr2:70889216-70895457	inter
CUST_10061_PI429285431	3.846427	P	3.8214564	P	1.01745895757647	0	lncRNA	11586-1_{1..1174}	lnc-MSH6-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MSH6-2:3	chr2	 48134457	 48135630	+	lnc-MSH6-2	lnc-MSH6-2:3	XLOC_001464	linc-FOXN2-2	FBXO11	NA	chr2:48124457-48132932	inter
CUST_36212_PI429285431	1.7806731	A	1.8610487	A	0.945811376384004	0	lncRNA	37467-1_{1..727}	n344756|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_305|NULL|-1.3370800|-0.2857125	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344756|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_305|NULL|-1.3370800|-0.2857125	chr14	 34528165	 34528891	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6613_PI429285431	2.6710465	A	2.6897871	A	0.987094011782226	0	lncRNA	6560-1_{1..539}	"transcript_id ""ENST00000595422.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595422.1"" | genecode_v17"	chr19	 57989017	 57989555	+	ENSG00000268266.1	ENST00000595422.1	AC003005.2	AC003005.2-001	ZNF772	NA	chr19:57979017-57988938	inter
CUST_11383_PI429285431	0.91348904	A	0.92929834	A	0.989101650329282	0	lncRNA	12948-1_{1..1124}	lnc-AC068473.1-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC068473.1-2:8	chr18	 76737808	 76738931	-	lnc-AC068473.1-2	lnc-AC068473.1-2:8	XLOC_012900	linc-MBP-4	SALL3	NA	chr18:76740275-76748115	inter
CUST_18488_PI429285431	1.8956134	A	1.5756588	A	1.24829126595297	0	lncRNA	20206-1_{1..590}	lnc-MMD-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MMD-5:1	chr17	 53638318	 53638907	-	lnc-MMD-5	lnc-MMD-5:1	ENSG00000236319	AC007638.2	NA	NA	NA	inter
CUST_21988_PI429285431	1.4927778	A	0.92513335	A	1.48210170307804	0	lncRNA	23596-1_{1..443}	lnc-ANKRD65-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD65-1:1	chr1	  1363098	  1363540	-	lnc-ANKRD65-1	lnc-ANKRD65-1:1	ENSG00000230270.1	RP4-758J18.8	VWA1	"hg19_refFlat_TMEM88B:range=chr1:1361508-13631675'pad=0,hg19_refFlat_TMEM88B:range=chr1:1361508-13631675'pad=0 3'pad=0 strand=+ repeatMasking=none,-113.40chr1:1370903-1373179"	NA	inner
CUST_3239_PI429285431	4.252533	P	4.3511324	P	0.933939240268653	0	lncRNA	3218-1_{1..711}	"transcript_id ""ENST00000523862.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523862.1"" | genecode_v17"	chr8	 97384093	 97384803	-	ENSG00000253105.1	ENST00000523862.1	KB-1448A5.1	KB-1448A5.1-002	NA	NA	NA	inter
CUST_26290_PI429285431	0.93070686	A	1.6809626	A	0.594498164169823	0	lncRNA	27796-1_{1..562}	lnc-H1FNT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-H1FNT-1:1	chr12	 48835870	 48836431	+	lnc-H1FNT-1	lnc-H1FNT-1:1	ENSG00000257735.1	RP11-370I10.6	NA	NA	NA	inter
CUST_47672_PI429285431	0.9258839	A	0.9266473	A	0.999470991416768	0	lncRNA	51654-1_{1..1377}	"gi|149944646|ref|NR_001534.2| Homo sapiens testis-specific transcript, Y-linked 7 (non-protein coding) (TTTY7), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|149944646|ref|NR_001534.2| Homo sapiens testis-specific transcript, Y-linked 7 (non-protein coding) (TTTY7), non-coding RNA"	ChrY	  6317509	  6318885	+	246122	NR_001534.2	NA	NA	NA	NA	NA	inter
CUST_12819_PI429285431	4.300427	P	4.8423862	P	0.686837540483945	0	lncRNA	14446-3_{6001..7579}	lnc-GAS6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GAS6-3:1	chr13	114637636	114639214	-	lnc-GAS6-3	lnc-GAS6-3:1	XLOC_010743	linc-GAS6-2	NA	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10"	NA	inter
CUST_29010_PI429285431	0.9097583	A	0.90595317	A	1.00264099643419	0	lncRNA	30734-1_{1..410}	n326494|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030257|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030257|-1.3916600|-0.4708682	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326494|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030257|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030257|-1.3916600|-0.4708682	chr1	105933838	105934247	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42995_PI429285431	0.91357696	A	0.91305256	A	1.00036355245067	0	lncRNA	46155-1_{1..140}	ENST00000364863 ncrna:snoRNA chromosome:GRCh37:11:66200234:66200373:1 gene:ENSG00000201733 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364863 ncrna:snoRNA chromosome:GRCh37:11:66200234:66200373:1 gene:ENSG00000201733 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 66200234	 66200373	+	ENSG00000201733	ENST00000364863	NA	NA	NPAS4	NA	chr11:66190234-66194177	inter
CUST_19008_PI429285431	6.176398	P	6.7402067	P	0.676513814670948	0	lncRNA	20698-1_{1..536}	lnc-BTBD17-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BTBD17-3:3	chr17	 72209352	 72209887	-	lnc-BTBD17-3	lnc-BTBD17-3:3	ENSG00000246731	CTD-2514K5.2	TTYH2	NA	chr17:72209696-72219447	inter
CUST_10596_PI429285431	0.92666453	A	1.2336162	A	0.808347947849193	0	lncRNA	12126-1_{1..405}	lnc-SUPT3H-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUPT3H-1:6	chr6	 45544322	 45544726	-	lnc-SUPT3H-1	lnc-SUPT3H-1:6	XLOC_005737	linc-SUPT3H	NA	NA	NA	inter
CUST_1875_PI429285431	0.92643845	A	0.9172915	A	1.00636032410538	0	lncRNA	1865-1_{1..648}	"transcript_id ""ENST00000506852.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506852.1"" | genecode_v17"	chr4	127964585	127965232	-	ENSG00000250945.1	ENST00000506852.1	RP11-810P8.1	RP11-810P8.1-001	NA	NA	NA	inter
CUST_22715_PI429285431	0.9821358	A	1.1723125	A	0.876498362005039	0	lncRNA	24299-1_{1..661}	lnc-RP11-809H16.2.1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-809H16.2.1-2:6	chr15	 69383255	 69383915	+	lnc-RP11-809H16.2.1-2	lnc-RP11-809H16.2.1-2:6	ENSG00000212766.4	LINC00277	NA	NA	NA	inter
CUST_16108_PI429285431	4.27877	P	4.4615135	P	0.881025999799562	0	lncRNA	17815-1_{1..3000}	lnc-C9orf156-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf156-2:1	chr9	100655088	100658087	-	lnc-C9orf156-2	lnc-C9orf156-2:1	XLOC_007800	linc-XPA-2	C9orf156	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70chr9:100666772-100668103"	NA	inter
CUST_39533_PI429285431	4.6962175	P	3.6990082	P	1.99613500768613	0	lncRNA	40478-2_{3001..3592}	n387397|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011dla.1||3.0101700|-0.1971915	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387397|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011dla.1||3.0101700|-0.1971915	chr6	 28186115	 28186706	-	NA	NA	NA	NA	ZNF193	NA	chr6:28193029-28196707	inter
CUST_18839_PI429285431	2.715309	A	2.3249755	A	1.31069635541987	0	lncRNA	20533-1_{1..557}	lnc-FAM70A-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM70A-1:7	chrX	119378619	119379175	-	lnc-FAM70A-1	lnc-FAM70A-1:7	ENSG00000233382	NKAPP1	ZBTB33	NA	chrX:119384607-119388743	inter
CUST_166_PI429285431	2.8045971	A	2.2521398	A	1.466581554977	0	lncRNA	157-1_{1..882}	"transcript_id ""ENST00000414128.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414128.1"" | genecode_v17"	chr1	 17181902	 17182783	+	ENSG00000230239.1	ENST00000414128.1	RP11-108M9.2	RP11-108M9.2-001	NA	NA	NA	inter
CUST_33439_PI429285431	0.9767381	A	0.9831608	A	0.995558018516054	0	lncRNA	35017-1_{1..1672}	n340171|AL137560|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2632|NULL|-0.9283220|-0.2437856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340171|AL137560|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2632|NULL|-0.9283220|-0.2437856	chr10	129796775	129798446	+	NA	NA	NA	NA	PTPRE	NA	chr10:129786775-129808365	inner
CUST_27822_PI429285431	9.752193	P	9.4936285	P	1.19628779059241	0	lncRNA	29408-1_{1..287}	n325050|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078204|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078204|-0.9389340|-0.3202252	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325050|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078204|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078204|-0.9389340|-0.3202252	chr20	 19686351	 19686637	+	NA	NA	NA	NA	SLC24A3	NA	chr20:19676351-19703541	inner
CUST_31516_PI429285431	4.6624837	P	4.799577	P	0.909349441696056	0	lncRNA	33276-2_{3001..5017}	n338003|AL833493|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|390|NULL|-0.3904640|-0.3000501	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338003|AL833493|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|390|NULL|-0.3904640|-0.3000501	chr22	 27599084	 27601100	+	NA	NA	NA	NA	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.66;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.52;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60"	NA	inter
CUST_19702_PI429285431	1.0272294	A	0.9281014	A	1.07112585230243	0	lncRNA	21359-1_{1..1616}	lnc-GSX2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-GSX2-2:2	chr4	 54599354	 54600969	+	lnc-GSX2-2	lnc-GSX2-2:2	ENSG00000249341.1	RP11-317M11.1	NA	NA	NA	inter
CUST_23672_PI429285431	5.7128425	P	5.410625	P	1.23303820368958	0	lncRNA	25237-1_{1..473}	lnc-AC012652.1.1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC012652.1.1-1:9	chr15	 41590239	 41590711	+	lnc-AC012652.1.1-1	lnc-AC012652.1.1-1:9	ENSG00000247556.2	OIP5-AS1	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90"	NA	inter
CUST_11267_PI429285431	0.91595775	A	0.9127051	A	1.00225710862001	0	lncRNA	12828-1_{1..464}	lnc-C1orf168-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf168-2:1	chr1	 57110891	 57111354	-	lnc-C1orf168-2	lnc-C1orf168-2:1	XLOC_000846	linc-PPAP2B	PRKAA2	NA	chr1:57100891-57120930	inter
CUST_10581_PI429285431	1.4158348	A	1.0771484	A	1.26460462415951	0	lncRNA	12111-1_{1..413}	lnc-C10orf85-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf85-1:1	chr10	122571543	122571955	+	lnc-C10orf85-1	lnc-C10orf85-1:1	XLOC_008643	linc-WDR11-2	NA	NA	NA	inter
CUST_15799_PI429285431	0.9153887	A	0.9099345	A	1.00378771869608	0	lncRNA	17490-1_{1..774}	lnc-ROBO2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ROBO2-6:1	chr3	 81257309	 81258082	+	lnc-ROBO2-6	lnc-ROBO2-6:1	XLOC_002718	linc-CADM2-6	NA	NA	NA	inter
CUST_31849_PI429285431	2.534984	A	2.8391998	A	0.809882321432858	0	lncRNA	33582-1_{1..1701}	n338397|CR604171|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|793|NULL|0.8642850|-0.1726227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338397|CR604171|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|793|NULL|0.8642850|-0.1726227	chr19	 18682348	 18684048	-	NA	NA	NA	NA	CRLF1	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40chr19:18704035-18715245"	NA	inner
CUST_40172_PI429285431	0.9265858	A	0.9163167	A	1.00714339087133	0	lncRNA	41007-1_{1..1975}	n407913|NR_027480|lncRNA|Homosapiens||RefGeneNoncode|NR_027480||4.7484500|-0.2445134	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407913|NR_027480|lncRNA|Homosapiens||RefGeneNoncode|NR_027480||4.7484500|-0.2445134	chr14	 19553364	 19555338	+	NA	NA	NA	NA	POTEG	NA	chr14:19543364-19584942	inner
CUST_32653_PI429285431	0.928688	A	0.94082534	A	0.991622326939065	0	lncRNA	34306-1_{1..3000}	n339278|CR627096|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1710|NULL|-1.0650200|-0.3359952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339278|CR627096|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1710|NULL|-1.0650200|-0.3359952	chr3	 31408477	 31411476	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13886_PI429285431	0.9111777	A	0.9074018	A	1.00262068243947	0	lncRNA	15529-1_{1..652}	lnc-FUT8-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FUT8-2:9	chr14	 66589358	 66590009	+	lnc-FUT8-2	lnc-FUT8-2:9	XLOC_010856	linc-GPHN-2	NA	NA	NA	inter
CUST_572_PI429285431	1.2468711	A	1.1920977	A	1.0386959454716	0	lncRNA	564-1_{1..182}	"transcript_id ""ENST00000458443.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458443.1"" | genecode_v17"	chr1	219730534	219730715	+	ENSG00000238232.1	ENST00000458443.1	RP11-95P13.2	RP11-95P13.2-001	NA	NA	NA	inter
LNCA_21_P0005836	1.0411807	A	0.99610525	A	1.0317371356325	0	lncRNA	TCONS_00015015	NA	NA	NA	NA	XLOC_007089	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007089), lincRNA [TCONS_00015015]"	chr8:58113183-58113124	hs|8q12.1	Agilent_HUMAN_G3V2	TCONS_00015015	TCONS_00015015	chr8	 58113124	 58113183	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15168_PI429285431	0.9502021	A	0.94945514	A	1.00051788727532	0	lncRNA	16831-1_{1..424}	lnc-ARHGEF5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGEF5-2:1	chr7	144854028	144854451	+	lnc-ARHGEF5-2	lnc-ARHGEF5-2:1	XLOC_006283	linc-CNTNAP2-1	NA	NA	NA	inter
CUST_18049_PI429285431	3.7899544	P	4.271251	P	0.71633354085846	0	lncRNA	19784-1_{1..567}	lnc-COPZ2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COPZ2-1:2	chr17	 46124980	 46125546	-	lnc-COPZ2-1	lnc-COPZ2-1:2	XLOC_012503	linc-COPZ2	NFE2L1	NA	chr17:46125686-46135435	inter
CUST_604_PI429285431	0.95058537	A	0.93474585	A	1.01103961033152	0	lncRNA	596-1_{1..2042}	"transcript_id ""ENST00000457698.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457698.1"" | genecode_v17"	chr1	232863000	232865041	-	ENSG00000236497.1	ENST00000457698.1	RP11-66A2.2	RP11-66A2.2-001	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-21.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80"	NA	inter
LNCA_21_P0009754	6.188795	P	5.4375505	P	1.68324420734565	0	lncRNA	TCONS_00027265	NA	NA	NA	NA	XLOC_013282	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013282), lincRNA [TCONS_00027265]"	chr19:28241842-28237204	hs|19q11	Agilent_HUMAN_G3V2	TCONS_00027265	TCONS_00027265	chr19	 28237204	 28241842	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24803_PI429285431	3.955143	P	4.129055	P	0.886435767425711	0	lncRNA	26346-1_{1..743}	lnc-C2orf42-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:4	chr2	 70314413	 70315155	-	lnc-C2orf42-3	lnc-C2orf42-3:4	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_40369_PI429285431	5.533976	P	6.243837	P	0.611379040824979	0	lncRNA	41168-1_{1..3000}	n409147|NR_033265|lncRNA|Homosapiens||RefGeneNoncode|NR_033265||1.5866500|-0.1789293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409147|NR_033265|lncRNA|Homosapiens||RefGeneNoncode|NR_033265||1.5866500|-0.1789293	chr17	 80347085	 80350084	-	NA	NA	NA	NA	C17orf101	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.81;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-55.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90chr17:80347086-80376513"	NA	inner
CUST_3835_PI429285431	1.6143816	A	1.9768174	A	0.777850173106662	0	lncRNA	3802-1_{1..375}	"transcript_id ""ENST00000453367.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453367.1"" | genecode_v17"	chr10	130757036	130757410	-	ENSG00000232985.1	ENST00000453367.1	RP11-442O18.1	RP11-442O18.1-001	NA	NA	NA	inter
CUST_39475_PI429285431	11.456487	P	11.418026	P	1.02701766739172	0	lncRNA	40420-1_{1..2188}	n387060|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010xhe.1||5.7084500|-0.0961520	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387060|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010xhe.1||5.7084500|-0.0961520	chr19	  3121806	  3123993	+	NA	NA	NA	NA	GNA15	NA	chr19:3130671-3133994	inter
CUST_25068_PI429285431	4.2250953	P	3.6612597	P	1.47819397645175	0	lncRNA	26606-1_{1..3000}	lnc-MGAT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-MGAT1-1:1	chr5	180211782	180214781	-	lnc-MGAT1-1	lnc-MGAT1-1:1	ENSG00000260841.1	CTC-205M6.5	MGAT1	NA	chr5:180217541-180224869	inter
LNCA_21_P0007028	2.0165095	A	2.5764048	A	0.678351391600537	0	lncRNA	TCONS_00018624	NA	NA	NA	NA	XLOC_008978	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008978), lincRNA [TCONS_00018624]"	chr10:125703137-125703078	hs|10q26.13	Agilent_HUMAN_G3V2	TCONS_00018624	TCONS_00018624	chr10	125703078	125703137	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24828_PI429285431	5.4356213	P	5.607884	P	0.887449727044505	0	lncRNA	26368-1_{1..496}	lnc-ZNF705A-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF705A-1:10	chr12	  8347873	  8348368	+	lnc-ZNF705A-1	lnc-ZNF705A-1:10	ENSG00000226711.2	FAM66C	NA	NA	NA	inter
CUST_1761_PI429285431	0.8943832	A	0.89362615	A	1.00052488477687	0	lncRNA	1747-1_{1..3000}	"transcript_id ""ENST00000563286.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563286.1"" | genecode_v17"	chr4	 47842139	 47845138	-	ENSG00000259959.1	ENST00000563286.1	RP11-121C2.2	RP11-121C2.2-001	CORIN	NA	chr4:47832139-47840059	inter
CUST_23281_PI429285431	5.564658	P	5.402503	P	1.11895731290447	0	lncRNA	24852-1_{1..627}	lnc-RAB26-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAB26-1:1	chr16	  2169802	  2170428	+	lnc-RAB26-1	lnc-RAB26-1:1	ENSG00000260447.1	RP11-304L19.2	PKD1	"hg19_refFlat_PKD1:range=chr16:2139728-21856905'pad=0,hg19_refFlat_PKD1:range=chr16:2139728-21856905'pad=0 3'pad=0 strand=- repeatMasking=none,-97.80chr16:2159802-2180249"	NA	inner
CUST_4452_PI429285431	1.0824989	A	0.962012	A	1.08710169022612	0	lncRNA	4402-1_{1..447}	"transcript_id ""ENST00000539034.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539034.1"" | genecode_v17"	chr12	122880089	122880535	+	ENSG00000257097.1	ENST00000539034.1	RP11-450K4.1	RP11-450K4.1-002	CLIP1	NA	chr12:122870089-122894165	inner
CUST_17783_PI429285431	3.0509372	P	3.5310357	P	0.71692867403363	0	lncRNA	19515-1_{1..831}	lnc-FBXO15-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXO15-3:3	chr18	 71358464	 71359294	-	lnc-FBXO15-3	lnc-FBXO15-3:3	XLOC_012881	linc-NETO1-1	NA	NA	NA	inter
CUST_14747_PI429285431	2.5438282	A	3.7137167	P	0.44445568941862	0	lncRNA	16411-1_{1..328}	lnc-FBXO15-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXO15-3:4	chr18	 71352853	 71353180	-	lnc-FBXO15-3	lnc-FBXO15-3:4	XLOC_012881	linc-NETO1-1	NA	NA	NA	inter
CUST_5106_PI429285431	0.9001512	A	0.89833367	A	1.00126060969636	0	lncRNA	5046-1_{1..364}	"transcript_id ""ENST00000562244.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562244.1"" | genecode_v17"	chr15	 24766828	 24767191	+	ENSG00000259905.1	ENST00000562244.1	PWRN1	PWRN1-012	NA	NA	NA	inter
CUST_44937_PI429285431	8.820914	P	9.014564	P	0.874390723193676	0	lncRNA	49449-1_{1..1840}	"gi|269308191|ref|NR_030770.1| Homo sapiens cerebral cavernous malformation 2 (CCM2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|269308191|ref|NR_030770.1| Homo sapiens cerebral cavernous malformation 2 (CCM2), transcript variant 5, non-coding RNA"	Chr7	 45039345	 45041184	+	83605	NR_030770.1	NA	NA	NA	NA	NA	inter
CUST_10184_PI429285431	5.73357	P	5.7454486	P	0.991800185296132	0	lncRNA	11709-2_{3001..5977}	lnc-CRIPAK-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRIPAK-1:4	chr4	  1553083	  1556059	+	lnc-CRIPAK-1	lnc-CRIPAK-1:4	XLOC_003422	linc-TACC3	NA	NA	NA	inter
LNCA_21_P0007710	0.9820752	A	0.9268067	A	1.03905246337662	0	lncRNA	TCONS_00020789	NA	NA	NA	NA	XLOC_010084	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010084), lincRNA [TCONS_00020789]"	chr12:54139908-54139849	hs|12q13.13	Agilent_HUMAN_G3V2	TCONS_00020789	TCONS_00020789	chr12	 54139849	 54139908	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51386_PI429285431	1.2403423	A	1.6641458	A	0.745456720240641	0	lncRNA	54975-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00009372 range=chr15:101087970-101098955 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009372 range=chr15:101087970-101098955 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	101093970	101096969	-	NA	NA	NA	NA	CERS3	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr15:101077970-101084925"	NA	inter
CUST_2199_PI429285431	0.91023386	A	1.2953352	A	0.765725209412283	0	lncRNA	2191-1_{1..301}	"transcript_id ""ENST00000511174.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511174.1"" | genecode_v17"	chr5	 72633733	 72634033	+	ENSG00000251543.1	ENST00000511174.1	RP11-60A8.2	RP11-60A8.2-001	NA	NA	NA	inter
CUST_51908_PI429285431	7.87463	P	7.698854	P	1.12957181802132	0	lncRNA	55451-1_{1..692}	hg19_lincRNAsTranscripts_TCONS_l2_00012781 range=chr19:59086812-59100923 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012781 range=chr19:59086812-59100923 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 59086812	 59087503	+	NA	NA	NA	NA	MZF1	NA	chr19:59076812-59084942	inter
CUST_3399_PI429285431	2.4553266	A	2.4845743	A	0.979931154012527	0	lncRNA	3372-1_{1..709}	"transcript_id ""ENST00000586172.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586172.1"" | genecode_v17"	chr9	 42468743	 42469451	+	ENSG00000223839.3	ENST00000586172.1	FAM95B1	FAM95B1-005	CBWD7	NA	chr9:42478004-42479819	inter
CUST_38525_PI429285431	0.9264145	A	0.9240227	A	1.00165924445175	0	lncRNA	39536-1_{1..1218}	n383181|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002idh.2||2.1100300|-0.1862360	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383181|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002idh.2||2.1100300|-0.1862360	chr17	 41277599	 41278816	+	NA	NA	NA	NA	BRCA1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90chr17:41267599-41277500"	NA	inter
LNCA_21_P0011244	2.8986876	A	2.9456096	A	0.967999360829159	0	lncRNA	TCONS_l2_00007731	NA	NA	NA	NA	XLOC_l2_004192	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004192), lincRNA [TCONS_l2_00007731]"	chr14:53656589-53656648	hs|14q22.1	Agilent_HUMAN_G3V2	TCONS_l2_00007731	TCONS_l2_00007731	chr14	 53656589	 53656648	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45419_PI429285431	1.2145563	A	2.7843235	A	0.336862747574902	0	lncRNA	49843-1_{1..1077}	"gi|310120402|ref|XR_108994.1| PREDICTED: Homo sapiens TTLL11 intronic transcript 1 (non-protein coding) (TTLL11-IT1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310120402|ref|XR_108994.1| PREDICTED: Homo sapiens TTLL11 intronic transcript 1 (non-protein coding) (TTLL11-IT1), misc_RNA"	Chr9	124646890	124647966	-	401550	XR_108994.1	NA	NA	NA	NA	NA	inter
CUST_2721_PI429285431	0.9034569	A	1.022706	A	0.920666718437319	0	lncRNA	2706-1_{1..304}	"transcript_id ""ENST00000435377.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435377.1"" | genecode_v17"	chr6	169467994	169468297	+	ENSG00000234519.1	ENST00000435377.1	RP3-495K2.1	RP3-495K2.1-002	NA	NA	NA	inter
LNCA_21_P0008000	0.9769756	A	1.2568598	A	0.823657126642582	0	lncRNA	BC037867	NA	BC037867	NA	Hs.552684	XLOC_010635	NA	ENST00000432697	THC2609386	NA	"BROAD Institute lincRNA (XLOC_010635), lincRNA [TCONS_00021662]"	chr13:62578288-62578229	hs|13q21.31	Agilent_HUMAN_G3V2	BC037867	BC037867	chr13	 62578229	 62578288	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11082_PI429285431	1.4719994	A	2.1482701	A	0.625780799966449	0	lncRNA	12634-1_{1..921}	lnc-CRYBA4-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-9:1	chr22	 27753434	 27754354	+	lnc-CRYBA4-9	lnc-CRYBA4-9:1	XLOC_014198	linc-HSCB-5	NA	NA	NA	inter
CUST_38619_PI429285431	3.5512273	P	5.332226	P	0.290981895801681	0	lncRNA	39623-1_{1..641}	n383771|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ukl.1||-1.0697100|-0.2859311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383771|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ukl.1||-1.0697100|-0.2859311	chr2	176992554	176993194	-	NA	NA	NA	NA	HOXD8	NA	chr2:176994422-176997423	inter
CUST_935_PI429285431	0.91760236	A	1.4305723	A	0.70077832580843	0	lncRNA	925-1_{1..625}	"transcript_id ""ENST00000449073.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449073.2"" | genecode_v17"	chr2	 71115001	 71115625	+	ENSG00000237751.2	ENST00000449073.2	AC007040.5	AC007040.5-001	NA	NA	NA	inter
CUST_18057_PI429285431	1.1943067	A	1.6409926	A	0.733726399794299	0	lncRNA	19792-1_{1..1288}	lnc-LHFP-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LHFP-3:1	chr13	 39790101	 39791388	-	lnc-LHFP-3	lnc-LHFP-3:1	XLOC_010574	linc-C13orf23-3	NA	NA	NA	inter
CUST_38923_PI429285431	0.9163866	A	0.9040436	A	1.00859221867009	0	lncRNA	39912-1_{1..2709}	n385018|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qgq.1||-1.0467500|-0.3951493	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385018|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qgq.1||-1.0467500|-0.3951493	chr6	136175173	136177881	-	NA	NA	NA	NA	PDE7B	NA	chr6:136172834-136516709	inner
CUST_45514_PI429285431	3.7671926	P	3.752114	P	1.01050649876391	0	lncRNA	49924-1_{1..3000}	"gi|333360894|ref|NR_038222.1| Homo sapiens uncharacterized LOC219731 (LOC219731), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|333360894|ref|NR_038222.1| Homo sapiens uncharacterized LOC219731 (LOC219731), non-coding RNA"	Chr10	 11891607	 11894606	-	219731	NR_038222.1	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70"	NA	inter
CUST_38190_PI429285431	5.3951755	P	4.96483	P	1.34755625416608	0	lncRNA	39258-1_{1..3000}	n381507|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kab.1||-1.0242400|-0.2248777	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381507|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kab.1||-1.0242400|-0.2248777	chr10	 80777213	 80780212	-	NA	NA	NA	NA	ZMIZ1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70chr10:80828792-80838536"	NA	inter
CUST_38617_PI429285431	2.0010693	A	1.1181046	A	1.84416111216306	0	lncRNA	39621-1_{1..1757}	n383756|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002twd.2||2.5536400|-0.2568316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n383756|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002twd.2||2.5536400|-0.2568316	chr2	145780381	145782137	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34724_PI429285431	5.5716467	P	5.8332767	P	0.834144944924975	0	lncRNA	36170-1_{1..3000}	n341630|CR627188|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4101|NULL|5.0421200|-0.2349764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341630|CR627188|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4101|NULL|5.0421200|-0.2349764	chr8	143783669	143786668	-	NA	NA	NA	NA	C8orf55	"hg19_refFlat_LY6K:range=chr8:143781946-1437844075'pad=0,hg19_refFlat_LY6K:range=chr8:143781946-1437844075'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_LY6K:range=chr8:143781946-1437847895'pad=0,hg19_refFlat_LY6K:range=chr8:143781946-1437847895'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.50;hg19_refFlat_LY6K:range=chr8:143781946-1437846415'pad=0,hg19_refFlat_LY6K:range=chr8:143781946-1437846415'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70chr8:143808621-143818350"	NA	inter
CUST_18403_PI429285431	3.6975098	P	4.0421715	P	0.7874926153954	0	lncRNA	20128-1_{1..803}	lnc-KLF14-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KLF14-2:4	chr7	130792479	130793281	-	lnc-KLF14-2	lnc-KLF14-2:4	ENSG00000231721	AC058791.2	MKLN1	NA	chr7:130794855-130802738	inter
CUST_394_PI429285431	6.9680376	P	7.088464	P	0.919915722029381	0	lncRNA	386-1_{1..738}	"transcript_id ""ENST00000426408.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426408.1"" | genecode_v17"	chr1	142619123	142619860	+	ENSG00000230880.2	ENST00000426408.1	RP11-417J8.3	RP11-417J8.3-004	NA	NA	NA	inter
LNCA_21_P0001209	3.1689656	P	3.6014802	P	0.74096915884731	0	lncRNA	ENST00000451690	NA	NA	NA	NA	XLOC_001134	NA	ENST00000451690	NA	NA	"BROAD Institute lincRNA (XLOC_001134), lincRNA [TCONS_00000707]"	chr1:192906529-192906470	hs|1q31.2	Agilent_HUMAN_G3V2	ENST00000451690	ENST00000451690	chr1	192906470	192906529	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004187	0.9303816	A	0.91279787	A	1.0122626906002	0	lncRNA	TCONS_00009804	NA	NA	NA	NA	XLOC_005056	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005056), lincRNA [TCONS_00009804]"	chr5:152318476-152318417	hs|5q33.1	Agilent_HUMAN_G3V2	TCONS_00009804	TCONS_00009804	chr5	152318417	152318476	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010138	6.3524156	P	6.7221823	P	0.773907636214045	0	lncRNA	ENST00000435315	NA	NA	NA	NA	XLOC_013862	NA	ENST00000435315	NA	NA	"BROAD Institute lincRNA (XLOC_013862), lincRNA [TCONS_00028792]"	chr21:16135250-16135309	hs|21q11.2	Agilent_HUMAN_G3V2	ENST00000435315	ENST00000435315	chr21	 16135250	 16135309	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31730_PI429285431	1.6994956	A	2.235828	A	0.689521575375755	0	lncRNA	33471-1_{1..1603}	n338264|AL365407|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|657|NULL|-0.4151640|-0.1347853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338264|AL365407|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|657|NULL|-0.4151640|-0.1347853	chr19	  2727740	  2729342	-	NA	NA	NA	NA	DIRAS1	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20chr19:2717740-2721390"	NA	inter
CUST_5172_PI429285431	13.238123	P	13.329258	P	0.93878389662471	0	lncRNA	5113-1_{1..505}	"transcript_id ""ENST00000558434.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558434.1"" | genecode_v17"	chr15	 48111825	 48112329	-	ENSG00000259572.1	ENST00000558434.1	RP11-198M11.2	RP11-198M11.2-003	NA	NA	NA	inter
CUST_26974_PI429285431	0.9213754	A	0.9238459	A	0.998289045245189	0	lncRNA	28500-1_{1..702}	n324061|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052783|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052783|-1.1328000|-0.4223155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324061|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052783|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052783|-1.1328000|-0.4223155	chr9	 81322607	 81323308	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23500_PI429285431	0.9205763	A	0.91232145	A	1.00573822691599	0	lncRNA	25067-1_{1..437}	lnc-FRY-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FRY-1:1	chr13	 32872592	 32873028	+	lnc-FRY-1	lnc-FRY-1:1	ENSG00000230633.1	RP11-37E23.5	FRY	NA	chr13:32862592-32870776	inter
CUST_18271_PI429285431	2.9664176	A	4.0723386	P	0.464605777603508	0	lncRNA	20004-2_{3001..6000}	lnc-WHAMM-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-WHAMM-2:4	chr15	 83424645	 83427644	+	lnc-WHAMM-2	lnc-WHAMM-2:4	ENSG00000250988	AC105339.1	FSD2	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80chr15:83428024-83435831"	NA	inter
CUST_4353_PI429285431	0.95958126	A	0.9929527	A	0.977134158532378	0	lncRNA	4308-1_{1..519}	"transcript_id ""ENST00000555596.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555596.1"" | genecode_v17"	chr12	 85711838	 85712356	+	ENSG00000258815.1	ENST00000555596.1	RP11-408B11.2	RP11-408B11.2-001	NA	NA	NA	inter
LNCA_21_P0003046	0.9272827	A	0.91039526	A	1.01177425866548	0	lncRNA	TCONS_00006278	NA	NA	NA	NA	XLOC_002878	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002878), lincRNA [TCONS_00006278]"	chr3:152457551-152457610	hs|3q25.2	Agilent_HUMAN_G3V2	TCONS_00006278	TCONS_00006278	chr3	152457551	152457610	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12771_PI429285431	2.440023	A	2.509746	A	0.952820923785264	0	lncRNA	14394-1_{1..210}	lnc-RNPC3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNPC3-3:1	chr1	103145340	103145549	+	lnc-RNPC3-3	lnc-RNPC3-3:1	XLOC_000322	linc-RNPC3-4	NA	NA	NA	inter
CUST_51765_PI429285431	2.0253704	A	2.7029657	A	0.625206507540069	0	lncRNA	55316-1_{1..959}	hg19_lincRNAsTranscripts_TCONS_l2_00012225 range=chr19:303340-304460 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012225 range=chr19:303340-304460 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	   303340	   304298	+	NA	NA	NA	NA	MIER2	NA	chr19:305575-314460	inter
CUST_8493_PI429285431	0.9263475	A	0.92536974	A	1.00067796129921	0	lncRNA	10057-1_{1..670}	lnc-TRIO-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIO-4:1	chr5	 12759471	 12760140	+	lnc-TRIO-4	lnc-TRIO-4:1	ENSG00000248131	RP11-308B16.1	NA	NA	NA	inter
CUST_40190_PI429285431	1.0883094	A	1.4634649	A	0.771022304059064	0	lncRNA	41024-1_{1..2284}	n407978|NR_027692_2|lncRNA|Homosapiens||RefGeneNoncode|NR_027692_2||-1.2153600|-0.3175104	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407978|NR_027692_2|lncRNA|Homosapiens||RefGeneNoncode|NR_027692_2||-1.2153600|-0.3175104	chr6	  4859020	  4861303	+	NA	NA	NA	NA	CDYL	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10chr6:4849020-4874476"	NA	inner
CUST_46917_PI429285431	5.703749	P	6.704475	P	0.499748450871652	0	lncRNA	51032-1_{1..2275}	"gi|302318969|ref|NR_036488.1| Homo sapiens long intergenic non-protein coding RNA 673 (LINC00673), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|302318969|ref|NR_036488.1| Homo sapiens long intergenic non-protein coding RNA 673 (LINC00673), non-coding RNA"	Chr17	 70399463	 70401737	-	100499467	NR_036488.1	NA	NA	NA	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70"	NA	inter
CUST_44457_PI429285431	0.91455054	A	0.98988104	A	0.949124665683656	0	lncRNA	49061-1_{1..2603}	"gi|336285445|ref|NR_038825.1| Homo sapiens uncharacterized LOC100506013 (LOC100506013), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336285445|ref|NR_038825.1| Homo sapiens uncharacterized LOC100506013 (LOC100506013), non-coding RNA"	Chr4	165798156	165800758	+	100506013	NR_038825.1	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.60"	NA	inter
CUST_33294_PI429285431	1.4565852	A	1.1290305	A	1.25488460077741	0	lncRNA	34877-1_{1..2180}	n340006|AK055897|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2459|NULL|-1.0289500|-0.3128737	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340006|AK055897|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2459|NULL|-1.0289500|-0.3128737	chr10	 29723167	 29725346	+	NA	NA	NA	NA	NA	"hg19_refFlat_C11orf44:range=chr11:130542874-1305840925'pad=0,hg19_refFlat_C11orf44:range=chr11:130542874-1305840925'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50"	NA	inter
CUST_15627_PI429285431	0.9214853	A	0.90632606	A	1.01056298299597	0	lncRNA	17315-1_{1..565}	lnc-AC091435.2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC091435.2-1:2	chr5	 38792359	 38792923	+	lnc-AC091435.2-1	lnc-AC091435.2-1:2	XLOC_004346	linc-OSMR	OSMR	NA	chr5:38782359-38802856	inter
CUST_31404_PI429285431	1.6527635	A	2.0230408	A	0.773633782552052	0	lncRNA	33179-1_{1..3000}	n337871|D16473|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|254|NULL|-1.1467200|-0.3350422	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337871|D16473|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|254|NULL|-1.1467200|-0.3350422	chrX	137823302	137826301	-	NA	NA	NA	NA	FGF13	NA	chrX:137813302-137836931	inner
CUST_32175_PI429285431	1.1209991	A	0.9128753	A	1.15518490859003	0	lncRNA	33874-1_{1..588}	n338746|D55644|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1167|NULL|-1.2092100|-0.3813173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338746|D55644|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1167|NULL|-1.2092100|-0.3813173	chr13	 58246841	 58247428	-	NA	NA	NA	NA	PCDH17	NA	chr13:58236841-58257428	inner
CUST_37567_PI429285431	0.89906824	A	0.8930485	A	1.00418128308167	0	lncRNA	38669-1_{1..613}	n346043|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1593|NULL|-1.4188500|-0.2660114	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346043|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1593|NULL|-1.4188500|-0.2660114	chr2	119146675	119147287	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2797_PI429285431	5.6292872	P	5.922621	P	0.816014221033356	0	lncRNA	2781-1_{1..1589}	"transcript_id ""ENST00000420185.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420185.1"" | genecode_v17"	chr7	 33832780	 33834368	-	ENSG00000236494.1	ENST00000420185.1	RP11-89N17.4	RP11-89N17.4-001	NA	NA	NA	inter
CUST_5703_PI429285431	4.9199395	P	5.124265	P	0.867944380411756	0	lncRNA	5627-1_{1..557}	"transcript_id ""ENST00000574016.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000574016.1"" | genecode_v17"	chr17	  1616269	  1616825	-	ENSG00000186594.6	ENST00000574016.1	MIR22HG	MIR22HG-007	WDR81	NA	chr17:1619817-1629504	inter
CUST_26883_PI429285431	5.8134947	P	6.089586	P	0.825825401468515	0	lncRNA	28400-1_{1..1403}	n323958|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054578|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054578|-0.4359600|-0.2755396	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323958|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054578|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054578|-0.4359600|-0.2755396	chr9	131285550	131286952	+	NA	NA	NA	NA	SPTAN1	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.94;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00chr9:131314837-131316374"	NA	inner
CUST_5681_PI429285431	1.5295688	A	1.6589677	A	0.914212278137615	0	lncRNA	5605-2_{3001..3515}	"transcript_id ""ENST00000602739.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602739.1"" | genecode_v17"	chr16	 86556989	 86557503	-	ENSG00000270020.1	ENST00000602739.1	RP11-463O9.9	RP11-463O9.9-001	MTHFSD	NA	chr16:86559041-86567503	inter
CUST_42162_PI429285431	1.3960252	A	2.0629606	A	0.629843192024805	0	lncRNA	44196-1_{1..83}	ENST00000582855 ncrna:miRNA chromosome:GRCh37:10:127508309:127508391:1 gene:ENSG00000265092 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582855 ncrna:miRNA chromosome:GRCh37:10:127508309:127508391:1 gene:ENSG00000265092 gene_biotype:miRNA transcript_biotype:miRNA	chr10	127508309	127508391	+	ENSG00000265092	ENST00000582855	NA	NA	BCCIP	NA	chr10:127512104-127518391	inner
CUST_10653_PI429285431	0.9099584	A	0.90819806	A	1.00122091942385	0	lncRNA	12185-1_{1..811}	lnc-POLR2B-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLR2B-1:6	chr4	 58071240	 58072050	+	lnc-POLR2B-1	lnc-POLR2B-1:6	XLOC_003547	linc-LPHN3-8	NA	NA	NA	inter
CUST_11141_PI429285431	0.90245605	A	0.8942883	A	1.00567750919478	0	lncRNA	12698-1_{1..1129}	lnc-STK35-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STK35-2:1	chr20	  2238600	  2239728	+	lnc-STK35-2	lnc-STK35-2:1	XLOC_013437	linc-TGM3-1	NA	NA	NA	inter
CUST_43971_PI429285431	6.000166	P	5.5417542	P	1.37402837738485	0	lncRNA	48674-1_{1..3000}	"gi|388556551|ref|NR_049789.1| Homo sapiens pleckstrin homology domain containing, family B (evectins) member 2 (PLEKHB2), transcript variant 11, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388556551|ref|NR_049789.1| Homo sapiens pleckstrin homology domain containing, family B (evectins) member 2 (PLEKHB2), transcript variant 11, non-coding RNA"	Chr2	131862420	131865419	+	55041	NR_049789.1	NA	NA	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.04;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60"	NA	inter
CUST_2726_PI429285431	8.380004	P	8.885064	P	0.704631072179164	0	lncRNA	2711-1_{1..2282}	"transcript_id ""ENST00000440168.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440168.1"" | genecode_v17"	chr6	169773776	169776057	-	ENSG00000226194.1	ENST00000440168.1	RP1-137D17.1	RP1-137D17.1-001	NA	NA	NA	inter
CUST_39755_PI429285431	5.958994	P	5.894685	P	1.04558402200186	0	lncRNA	40677-1_{1..448}	n405897|NR_003136|lncRNA|Homosapiens||RefGeneNoncode|NR_003136||-1.0580200|-0.3197492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405897|NR_003136|lncRNA|Homosapiens||RefGeneNoncode|NR_003136||-1.0580200|-0.3197492	chr15	 76225023	 76225470	-	NA	NA	NA	NA	NRG4	"hg19_refFlat_FBXO22:range=chr15:76196305-762254435'pad=0,hg19_refFlat_FBXO22:range=chr15:76196305-762254435'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90chr15:76234314-76235471"	NA	inter
CUST_50703_PI429285431	3.1114945	P	3.1445694	P	0.977335025061075	0	lncRNA	54374-1_{1..262}	hg19_lincRNAsTranscripts_TCONS_l2_00003601 range=chr10:65929847-65930169 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003601 range=chr10:65929847-65930169 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 65929847	 65930108	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6843_PI429285431	1.3829627	A	0.8995663	A	1.39803104704655	0	lncRNA	6791-1_{1..900}	"transcript_id ""ENST00000433310.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433310.1"" | genecode_v17"	chr21	 29816870	 29817769	-	ENSG00000232855.1	ENST00000433310.1	AF131217.1	AF131217.1-001	NA	NA	NA	inter
CUST_43908_PI429285431	4.228325	P	3.5511267	P	1.59903143420757	0	lncRNA	48622-1_{1..1366}	"gi|325651954|ref|NR_037936.1| Homo sapiens lipoyltransferase 1 (LIPT1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|325651954|ref|NR_037936.1| Homo sapiens lipoyltransferase 1 (LIPT1), transcript variant 2, non-coding RNA"	Chr2	 99771418	 99772783	+	51601	NR_037936.1	NA	NA	NA	NA	NA	inter
CUST_44844_PI429285431	0.9218699	A	0.9078001	A	1.00980015223581	0	lncRNA	49372-1_{1..2135}	"gi|257153355|ref|NR_028390.1| Homo sapiens PACRG antisense RNA 1 (PACRG-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|257153355|ref|NR_028390.1| Homo sapiens PACRG antisense RNA 1 (PACRG-AS1), non-coding RNA"	Chr6	163731017	163733151	-	285796	NR_028390.1	NA	NA	NA	NA	NA	inter
CUST_20393_PI429285431	4.296372	P	3.8336234	P	1.37816497687838	0	lncRNA	22034-1_{1..387}	lnc-BLID-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BLID-1:1	chr11	121986841	121987227	-	lnc-BLID-1	lnc-BLID-1:1	ENSG00000255248.2	RP11-166D19.1	BLID	NA	chr11:121986062-121986923	inter
CUST_40153_PI429285431	5.564516	P	5.700407	P	0.910107582880452	0	lncRNA	40991-1_{1..2884}	n407828|NR_027379|lncRNA|Homosapiens||RefGeneNoncode|NR_027379||3.6681500|-0.3030821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407828|NR_027379|lncRNA|Homosapiens||RefGeneNoncode|NR_027379||3.6681500|-0.3030821	chr1	 85093912	 85096795	-	NA	NA	NA	NA	SSX2IP	NA	chr1:85109390-85110703	inter
CUST_44737_PI429285431	8.065175	P	8.038557	P	1.0186214480546	0	lncRNA	49289-1_{1..1188}	"gi|262263323|ref|NR_029472.1| Homo sapiens small nuclear ribonucleoprotein polypeptide C (SNRPC), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|262263323|ref|NR_029472.1| Homo sapiens small nuclear ribonucleoprotein polypeptide C (SNRPC), transcript variant 2, non-coding RNA"	Chr6	 34724871	 34726058	+	6631	NR_029472.1	NA	NA	NA	NA	NA	inter
CUST_45356_PI429285431	0.91473234	A	0.912167	A	1.00177974004891	0	lncRNA	49793-1_{1..763}	"gi|410170572|ref|XR_132891.3| PREDICTED: Homo sapiens uncharacterized protein FLJ20444 (FLJ20444), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170572|ref|XR_132891.3| PREDICTED: Homo sapiens uncharacterized protein FLJ20444 (FLJ20444), misc_RNA"	Chr9	 66523698	 66524460	-	403323	XR_132891.4	NA	NA	NA	NA	NA	inter
CUST_27518_PI429285431	0.966566	A	0.89873487	A	1.04813978172554	0	lncRNA	29089-1_{1..509}	n324697|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322347|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322347|-1.0020300|-0.2718177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324697|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322347|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322347|-1.0020300|-0.2718177	chr22	 25629254	 25629762	+	NA	NA	NA	NA	CRYBB2	NA	chr22:25619254-25627836	inter
CUST_9928_PI429285431	0.90582067	A	0.90677154	A	0.999341124294409	0	lncRNA	11453-1_{1..246}	lnc-TNC-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TNC-3:1	chr9	118505232	118505477	-	lnc-TNC-3	lnc-TNC-3:1	XLOC_007835	linc-TNC-2	NA	NA	NA	inter
CUST_30802_PI429285431	3.6584377	P	3.042384	P	1.53267700845517	0	lncRNA	32589-1_{1..205}	n336702|Z70702|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327953_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327953_05|-1.2209200|-0.3070620	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336702|Z70702|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327953_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327953_05|-1.2209200|-0.3070620	chr5	 70525719	 70525923	-	NA	NA	NA	NA	LOC100652870	NA	chr5:70519357-70519728	inter
CUST_46464_PI429285431	1.2233082	A	0.9027586	A	1.24880619562503	0	lncRNA	50665-1_{1..2366}	"gi|148806860|ref|NR_003571.1| Homo sapiens protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 pseudogene 1 (PIN4P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|148806860|ref|NR_003571.1| Homo sapiens protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 pseudogene 1 (PIN4P1), non-coding RNA"	Chr15	 44168004	 44170369	-	728758	NR_003571.1	NA	NA	NA	"hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50"	NA	inter
CUST_51043_PI429285431	0.9924726	A	0.8972932	A	1.06819823088479	0	lncRNA	54685-1_{1..351}	hg19_lincRNAsTranscripts_TCONS_l2_00007060 range=chr13:20753146-20759620 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007060 range=chr13:20753146-20759620 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 20753146	 20753496	-	NA	NA	NA	NA	GJB2	NA	chr13:20761602-20767114	inter
CUST_2954_PI429285431	1.3537272	A	1.6115783	A	0.836332713037294	0	lncRNA	2935-1_{1..534}	"transcript_id ""ENST00000419225.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000419225.1"" | genecode_v17"	chr7	155213901	155214434	-	ENSG00000236544.1	ENST00000419225.1	AC008060.8	AC008060.8-001	EN2	NA	chr7:155250824-155257526	inter
CUST_31141_PI429285431	5.4085593	P	5.612399	P	0.868236693317029	0	lncRNA	32936-1_{1..553}	n337470|EF077644|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394809|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394809|2.8824200|-0.2226371	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337470|EF077644|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394809|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394809|2.8824200|-0.2226371	chr5	176346202	176346754	-	NA	NA	NA	NA	UIMC1	NA	chr5:176336202-176406708	inner
LNCA_21_P0003627	0.9289576	A	0.9194126	A	1.00663802450805	0	lncRNA	THC2525615	NA	NA	NA	NA	XLOC_003595	NA	NA	THC2525615	NA	"BROAD Institute lincRNA (XLOC_003595), lincRNA [TCONS_00008144]"	chr4:084010335-084010394	hs|4q21.22	Agilent_HUMAN_G3V2	THC2525615	THC2525615	chr4	 84010335	 84010394	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29369_PI429285431	2.8066535	A	1.7536094	A	2.07490329737149	0	lncRNA	31121-1_{1..499}	n332634|AB014735|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000058374|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000058374|3.1450700|-0.3333174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332634|AB014735|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000058374|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000058374|3.1450700|-0.3333174	chr7	 64167991	 64168489	+	NA	NA	NA	NA	ZNF107	NA	chr7:64157991-64171404	inner
CUST_11233_PI429285431	6.831945	P	7.1752543	P	0.788231166726935	0	lncRNA	12791-1_{1..578}	lnc-CCDC40-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC40-2:4	chr17	 77898925	 77899502	+	lnc-CCDC40-2	lnc-CCDC40-2:4	XLOC_012335	linc-CCDC40-1	NA	NA	NA	inter
CUST_11813_PI429285431	0.9139601	A	0.90737927	A	1.00457190316391	0	lncRNA	13395-1_{1..769}	lnc-NRG2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NRG2-3:2	chr5	139125786	139126554	-	lnc-NRG2-3	lnc-NRG2-3:2	XLOC_005020	linc-TMEM173-2	NA	NA	NA	inter
CUST_22973_PI429285431	0.9172411	A	1.3060815	A	0.763743234387657	0	lncRNA	24547-1_{1..375}	lnc-LARS-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LARS-1:2	chr5	145754906	145755280	-	lnc-LARS-1	lnc-LARS-1:2	ENSG00000250025.1	CTC-359M8.1	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40"	NA	inter
CUST_21433_PI429285431	11.045187	P	10.501536	P	1.45765671680778	0	lncRNA	23052-1_{1..206}	lnc-NMNAT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NMNAT1-2:1	chr1	  9962082	  9962287	+	lnc-NMNAT1-2	lnc-NMNAT1-2:1	ENSG00000234374.1	RP11-84A14.2	CTNNBIP1	NA	chr1:9952082-9970316	inner
LNCA_21_P0008659	1.6048603	A	2.4285157	A	0.565008548273254	0	lncRNA	TCONS_00023477	NA	NA	NA	NA	XLOC_011325	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011325), lincRNA [TCONS_00023477]"	chr15:79513034-79513093	hs|15q25.1	Agilent_HUMAN_G3V2	TCONS_00023477	TCONS_00023477	chr15	 79513034	 79513093	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23452_PI429285431	0.9248237	A	1.1928327	A	0.830464843365452	0	lncRNA	25020-1_{1..607}	lnc-CTH-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTH-4:2	chr1	 71532449	 71533055	+	lnc-CTH-4	lnc-CTH-4:2	ENSG00000235079.1	ZRANB2-AS1	ZRANB2	"hg19_refFlat_ZRANB2:range=chr1:71531402-715466785'pad=0,hg19_refFlat_ZRANB2:range=chr1:71531402-715466785'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_ZRANB2:range=chr1:71530757-715466785'pad=0,hg19_refFlat_ZRANB2:range=chr1:71530757-715466785'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00chr1:71528974-71542641"	NA	inner
CUST_51766_PI429285431	0.9286724	A	0.98986495	A	0.958471507086975	0	lncRNA	55317-1_{1..746}	hg19_lincRNAsTranscripts_TCONS_l2_00012260 range=chr19:7420502-7440878 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012260 range=chr19:7420502-7440878 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	  7420502	  7421247	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47467_PI429285431	5.0030975	P	4.523619	P	1.39423959074485	0	lncRNA	51492-1_{1..2548}	"gi|158138499|ref|NR_003950.1| Homo sapiens zinc finger, DHHC-type containing 8 pseudogene 1 (ZDHHC8P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|158138499|ref|NR_003950.1| Homo sapiens zinc finger, DHHC-type containing 8 pseudogene 1 (ZDHHC8P1), non-coding RNA"	NA	NA	NA	NA	NA	NR_003950.1	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_LOC388849:range=chr22:20136137-201372615'pad=0,hg19_refFlat_LOC388849:range=chr22:20136137-201372615'pad=0 3'pad=0 strand=- repeatMasking=none,-92.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-61.34;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90"	NA	Unknown
CUST_40147_PI429285431	0.92566794	A	0.92797387	A	0.998402927801216	0	lncRNA	40985-1_{1..1729}	n407774|NR_027296|lncRNA|Homosapiens||RefGeneNoncode|NR_027296||6.8966800|-0.2017529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407774|NR_027296|lncRNA|Homosapiens||RefGeneNoncode|NR_027296||6.8966800|-0.2017529	chr12	 25629043	 25630771	-	NA	NA	NA	NA	IFLTD1	NA	chr12:25629016-25716186	inner
CUST_1385_PI429285431	0.9162224	A	0.90968114	A	1.00454435031044	0	lncRNA	1374-1_{1..409}	"transcript_id ""ENST00000465795.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000465795.1"" | genecode_v17"	chr3	 78087856	 78088264	-	ENSG00000244461.1	ENST00000465795.1	RP11-354H21.1	RP11-354H21.1-001	NA	NA	NA	inter
CUST_7175_PI429285431	6.4810314	P	6.7679205	P	0.819667613083587	0	lncRNA	7356-1_{1..338}	"transcript_id ""ENST00000516167.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516167.1"" | genecode_v17"	chr2	137147902	137148239	+	ENSG00000251976.1	ENST00000516167.1	RN7SKP141	RN7SKP141-201	NA	NA	NA	inter
CUST_26501_PI429285431	5.3587794	P	5.4227486	P	0.956628580873504	0	lncRNA	28010-1_{1..3000}	lnc-CA5A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-CA5A-2:2	chr16	 88134300	 88137299	-	lnc-CA5A-2	lnc-CA5A-2:2	ENSG00000205037.2	RP11-863P13.4	NA	NA	NA	inter
CUST_458_PI429285431	2.1281579	A	2.0576074	A	1.05011730834478	0	lncRNA	450-1_{1..523}	"transcript_id ""ENST00000441085.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441085.1"" | genecode_v17"	chr1	156416204	156416726	-	ENSG00000236947.1	ENST00000441085.1	RP11-98G7.1	RP11-98G7.1-001	MEF2D	NA	chr1:156433519-156436258	inter
LNCA_21_P0012032	1.2266498	A	1.4500263	A	0.856558389629118	0	lncRNA	ENST00000449526	NA	NA	NA	NA	XLOC_l2_007610	NA	ENST00000449526	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007610), lincRNA [TCONS_l2_00015526]"	chr2:159547432-159610169	hs|2q24.1	Agilent_HUMAN_G3V2	ENST00000449526	ENST00000449526	chr2	159547432	159610169	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15559_PI429285431	0.9313988	A	0.92016065	A	1.00782011057034	0	lncRNA	17243-1_{1..593}	lnc-PSMG1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PSMG1-4:2	chr21	 40402249	 40402841	-	lnc-PSMG1-4	lnc-PSMG1-4:2	XLOC_014081	linc-ERG-10	NA	NA	NA	inter
CUST_5326_PI429285431	0.91603327	A	0.90688545	A	1.00636093097913	0	lncRNA	5265-1_{1..1256}	"transcript_id ""ENST00000554530.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554530.1"" | genecode_v17"	chr15	 94406338	 94407593	+	ENSG00000258476.1	ENST00000554530.1	RP11-76E17.3	RP11-76E17.3-001	NA	NA	NA	inter
CUST_17015_PI429285431	0.9084398	A	0.9049161	A	1.00244542791325	0	lncRNA	18726-1_{1..1036}	lnc-AC010325.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC010325.1-1:3	chr19	 51321483	 51322518	+	lnc-AC010325.1-1	lnc-AC010325.1-1:3	XLOC_013119	linc-KLK3-2	KLK15	NA	chr19:51328545-51332108	inter
CUST_19695_PI429285431	3.6374905	P	4.001621	P	0.776936987220891	0	lncRNA	21353-1_{1..670}	lnc-CBLL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CBLL1-1:1	chr7	107384183	107384852	+	lnc-CBLL1-1	lnc-CBLL1-1:1	ENSG00000241292.1	AC002467.5	CBLL1	NA	chr7:107384279-107394360	inter
CUST_22842_PI429285431	1.1560982	A	0.91244715	A	1.18398520232568	0	lncRNA	24421-1_{1..670}	lnc-EIF6-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF6-1:7	chr20	 33865812	 33866481	-	lnc-EIF6-1	lnc-EIF6-1:7	ENSG00000126005.10	MT1P3	MMP24	NA	chr20:33855812-33864804	inter
CUST_21653_PI429285431	1.2239093	A	2.0927799	A	0.54757534700411	0	lncRNA	23265-1_{1..3000}	lnc-SUSD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SUSD1-1:1	chr9	114798963	114801962	-	lnc-SUSD1-1	lnc-SUSD1-1:1	ENSG00000259953.1	RP11-4O1.2	SUSD1	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80chr9:114803061-114810010"	NA	inter
CUST_23066_PI429285431	1.0458399	A	1.0422984	A	1.0024577961811	0	lncRNA	24637-1_{1..219}	lnc-HTR1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HTR1A-1:1	chr5	 63276775	 63276993	-	lnc-HTR1A-1	lnc-HTR1A-1:1	ENSG00000248285.1	RP11-158J3.2	NA	NA	NA	inter
CUST_15680_PI429285431	3.6121757	P	3.7252393	P	0.924622516007657	0	lncRNA	17366-1_{1..977}	lnc-FMOD-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FMOD-2:1	chr1	203524517	203525493	-	lnc-FMOD-2	lnc-FMOD-2:1	XLOC_001162	linc-FMOD-2	NA	NA	NA	inter
CUST_8682_PI429285431	1.7054135	A	2.6941533	A	0.503917757052566	0	lncRNA	10230-1_{1..1623}	lnc-C2orf78-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf78-1:1	chr2	 73933639	 73935261	+	lnc-C2orf78-1	lnc-C2orf78-1:1	ENSG00000251346	ENST00000502958	NAT8B	"hg19_refFlat_NAT8B:range=chr2:73927749-739284325'pad=0,hg19_refFlat_NAT8B:range=chr2:73927749-739284325'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60;hg19_refFlat_NAT8:range=chr2:73868072-738687555'pad=0,hg19_refFlat_NAT8:range=chr2:73868072-738687555'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70chr2:73927636-73928467"	NA	inter
CUST_20096_PI429285431	4.2722816	P	4.5581636	P	0.820239997004043	0	lncRNA	21744-1_{1..323}	lnc-PIPOX-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PIPOX-2:1	chr17	 27482229	 27482551	+	lnc-PIPOX-2	lnc-PIPOX-2:1	ENSG00000263709.1	RP11-321A17.4	MYO18A	NA	chr17:27472229-27492507	inner
CUST_31565_PI429285431	2.508701	A	1.0118352	A	2.82228914427807	0	lncRNA	33322-2_{3001..3114}	n338058|AL133652|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|445|NULL|1.0613300|-0.3136887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338058|AL133652|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|445|NULL|1.0613300|-0.3136887	chr1	 90225227	 90225340	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00812924	8.683442	P	8.424086	P	1.19694428523848	0	lncRNA	ENST00000530955	XR_110530	XR_110530	NA	NA	LOC100507165	NA	ENST00000530955	THC2497699	NA	"PREDICTED: Homo sapiens hypothetical LOC100507165 (LOC100507165), miscRNA [XR_110530]"	chr11:121899153-121899094	hs|11q24.1	Agilent_HUMAN_G3V2	ENST00000530955	ENST00000530955	chr11	121899094	121899153	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39283_PI429285431	8.644771	P	7.8843164	P	1.69402433567734	0	lncRNA	40255-1_{1..1402}	n386260|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fmc.2||-0.2246560|-0.2894683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386260|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fmc.2||-0.2246560|-0.2894683	chr2	128601126	128602527	-	NA	NA	NA	NA	POLR2D	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-20.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-23.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.52;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-31.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-21.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30chr2:128603840-128613193"	NA	inter
CUST_5136_PI429285431	4.3659925	P	5.1271725	P	0.590013553154079	0	lncRNA	5076-1_{1..574}	"transcript_id ""ENST00000560363.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560363.1"" | genecode_v17"	chr15	 33010302	 33010875	-	ENSG00000259721.1	ENST00000560363.1	RP11-758N13.1	RP11-758N13.1-001	GREM1	NA	chr15:33010205-33021055	inner
CUST_9035_PI429285431	4.5992293	P	4.4486704	P	1.10999940250821	0	lncRNA	10561-1_{1..529}	lnc-PLEKHA3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLEKHA3-1:3	chr2	179400459	179400987	+	lnc-PLEKHA3-1	lnc-PLEKHA3-1:3	ENSG00000237298	AC009948.3	TTN	"hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10chr2:179390716-179410579"	NA	inter
LNCA_21_P0009536	5.213589	P	5.2903814	P	0.948163393516703	0	lncRNA	TCONS_00026462	NA	NA	NA	NA	XLOC_012794	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012794), lincRNA [TCONS_00026462]"	chr18:23539058-23538999	hs|18q11.2	Agilent_HUMAN_G3V2	TCONS_00026462	TCONS_00026462	chr18	 23538999	 23539058	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6947_PI429285431	11.644501	P	12.1327915	P	0.712869301397141	0	lncRNA	6896-1_{1..346}	"transcript_id ""ENST00000450776.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450776.1"" | genecode_v17"	chr22	 23668803	 23669148	+	ENSG00000236611.1	ENST00000450776.1	AP000343.2	AP000343.2-001	BCR	NA	chr22:23658803-23660224	inter
CUST_23656_PI429285431	0.9494921	A	0.92375284	A	1.01800119856374	0	lncRNA	25222-1_{1..558}	lnc-NPBWR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPBWR1-1:1	chr8	 54128859	 54129416	+	lnc-NPBWR1-1	lnc-NPBWR1-1:1	ENSG00000254687.1	RP11-162D9.3	OPRK1	NA	chr8:54118859-54138983	inter
CUST_36320_PI429285431	0.95181525	A	0.9541859	A	0.998358139965734	0	lncRNA	37551-2_{3001..3072}	n344846|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_395|NULL|-1.5420300|-0.2970106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344846|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_395|NULL|-1.5420300|-0.2970106	chr5	115635110	115635181	+	NA	NA	NA	NA	COMMD10	NA	chr5:115622110-115628978	inter
CUST_9753_PI429285431	6.3534446	P	6.29704	P	1.03987102335787	0	lncRNA	11270-1_{1..1279}	lnc-NAB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAB2-1:1	chr12	 57481380	 57482658	+	lnc-NAB2-1	lnc-NAB2-1:1	XLOC_009777	linc-NAB2	STAT6	NA	chr12:57489187-57492632	inter
CUST_5128_PI429285431	3.595902	P	3.9736223	P	0.769652810721367	0	lncRNA	5068-1_{1..1068}	"transcript_id ""ENST00000567770.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567770.1"" | genecode_v17"	chr15	 30471079	 30472146	-	ENSG00000259906.1	ENST00000567770.1	RP11-932O9.4	RP11-932O9.4-001	NA	NA	NA	inter
CUST_29675_PI429285431	1.2483892	A	1.0362577	A	1.15839838806857	0	lncRNA	31437-1_{1..692}	n333320|AY211918|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085291|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085291|4.2396300|-0.4179036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333320|AY211918|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085291|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085291|4.2396300|-0.4179036	chr1	 93720067	 93720758	+	NA	NA	NA	NA	CCDC18	NA	chr1:93710067-93740506	inner
CUST_9081_PI429285431	6.4361377	P	6.1275887	P	1.23846148258923	0	lncRNA	10602-2_{3001..5689}	lnc-EIF4E1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF4E1B-1:1	chr5	176059233	176061921	+	lnc-EIF4E1B-1	lnc-EIF4E1B-1:1	ENSG00000244826	ENST00000501116	EIF4E1B	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SNCB:range=chr5:176047812-1760566555'pad=0,hg19_refFlat_SNCB:range=chr5:176047812-1760566555'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-17.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50chr5:176057683-176066691"	NA	inter
CUST_10047_PI429285431	4.1994133	P	5.0905156	P	0.539201980241818	0	lncRNA	11572-1_{1..643}	lnc-SDSL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SDSL-1:1	chr12	113851429	113852071	+	lnc-SDSL-1	lnc-SDSL-1:1	XLOC_009884	linc-SDSL	SDS	NA	chr12:113841429-113841692	inter
CUST_9939_PI429285431	0.9710485	A	1.1174865	A	0.903478390456574	0	lncRNA	11462-1_{1..622}	lnc-CD6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD6-1:1	chr11	 60807428	 60808049	+	lnc-CD6-1	lnc-CD6-1:1	XLOC_009143	linc-CD5	NA	NA	NA	inter
CUST_29509_PI429285431	0.90362954	A	1.0758811	A	0.887456579655659	0	lncRNA	31267-1_{1..489}	n332943|AF088002|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067550|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067550|-1.4007400|-0.5523272	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332943|AF088002|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067550|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067550|-1.4007400|-0.5523272	chr12	 22353581	 22354069	-	NA	NA	NA	NA	ST8SIA1	NA	chr12:22346325-22364070	inner
CUST_49454_PI429285431	0.9124326	A	1.5082879	A	0.661652079269078	0	lncRNA	53254-1_{1..209}	hg19_lincRNAsTranscripts_TCONS_l2_00024286 range=chr6:74847980-75186047 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024286 range=chr6:74847980-75186047 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 74847980	 74848188	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10523_PI429285431	0.91556203	A	0.90686214	A	1.0060485231126	0	lncRNA	12051-1_{1..281}	lnc-CCDC99-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC99-1:1	chr5	168926492	168926772	+	lnc-CCDC99-1	lnc-CCDC99-1:1	XLOC_004627	linc-CCDC99	NA	NA	NA	inter
CUST_14911_PI429285431	5.8030987	P	5.2718716	P	1.44515786770237	0	lncRNA	16574-1_{1..264}	lnc-CNNM1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CNNM1-2:1	chr10	100996194	100996457	+	lnc-CNNM1-2	lnc-CNNM1-2:1	XLOC_008577	linc-CNNM1	HPSE2	NA	chr10:100986194-100995632	inter
CUST_22340_PI429285431	4.3074903	P	4.245845	P	1.0436553035088	0	lncRNA	23934-1_{1..413}	lnc-TMED5-1:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMED5-1:18	chr1	 93803931	 93804343	-	lnc-TMED5-1	lnc-TMED5-1:18	ENSG00000223745.1	RP4-717I23.3	DR1	"hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0,hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10chr1:93811478-93814088"	NA	inter
CUST_15227_PI429285431	1.4491048	A	1.5932466	A	0.904917515734448	0	lncRNA	16897-1_{1..684}	lnc-CMPK2-4:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMPK2-4:9	chr2	  6787668	  6788351	-	lnc-CMPK2-4	lnc-CMPK2-4:9	XLOC_001964	linc-RNASEH1-13	NA	NA	NA	inter
CUST_22741_PI429285431	2.56002	A	3.2581398	P	0.616374977425127	0	lncRNA	24324-1_{1..521}	lnc-C17orf63-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf63-2:1	chr17	 27074181	 27074701	-	lnc-C17orf63-2	lnc-C17orf63-2:1	ENSG00000265474.1	AC010761.9	C17orf63	"hg19_refFlat_TRAF4:range=chr17:27071131-270765955'pad=0,hg19_refFlat_TRAF4:range=chr17:27071131-270765955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70chr17:27082996-27084670"	NA	inner
CUST_46064_PI429285431	7.5088296	P	7.718098	P	0.86497575491741	0	lncRNA	50338-2_{3001..3115}	"gi|302191713|ref|NR_036478.1| Homo sapiens transmembrane protein 198B, pseudogene (TMEM198B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302191713|ref|NR_036478.1| Homo sapiens transmembrane protein 198B, pseudogene (TMEM198B), transcript variant 3, non-coding RNA"	Chr12	 56226392	 56226506	+	440104	NR_036478.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20"	NA	inter
CUST_34741_PI429285431	1.6742412	A	2.222905	A	0.683653023231232	0	lncRNA	36185-1_{1..1559}	n341647|BC041456|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4118|NULL|-0.8771180|-0.2412463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341647|BC041456|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4118|NULL|-0.8771180|-0.2412463	chr9	  3181588	  3183146	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33996_PI429285431	3.2015364	A	3.3298106	P	0.91492526003146	0	lncRNA	35533-1_{1..456}	n340809|AF147404|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3272|NULL|-1.1043900|-0.3115795	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340809|AF147404|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3272|NULL|-1.1043900|-0.3115795	chr17	 65934096	 65934551	+	NA	NA	NA	NA	BPTF	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-32.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-20.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40chr17:65924096-65944933"	NA	inner
CUST_14337_PI429285431	0.9861457	A	1.735522	A	0.594860669644222	0	lncRNA	15993-1_{1..362}	lnc-C20orf187-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf187-2:1	chr20	 10847661	 10848022	+	lnc-C20orf187-2	lnc-C20orf187-2:1	XLOC_013461	linc-BTBD3-3	NA	NA	NA	inter
CUST_4267_PI429285431	5.1028643	P	5.392576	P	0.818065519801462	0	lncRNA	4224-1_{1..2680}	"transcript_id ""ENST00000562848.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562848.1"" | genecode_v17"	chr12	 54413694	 54416373	+	ENSG00000260597.1	ENST00000562848.1	AC012531.25	AC012531.25-001	HOXC6	NA	chr12:54410642-54424607	inner
CUST_42321_PI429285431	4.7057695	P	4.6617	P	1.03101798557954	0	lncRNA	44956-1_{1..95}	ENST00000516318 ncrna:snoRNA supercontig:GRCh37:GL000193.1:175230:175324:1 gene:ENSG00000252127 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516318 ncrna:snoRNA supercontig:GRCh37:GL000193.1:175230:175324:1 gene:ENSG00000252127 gene_biotype:snoRNA transcript_biotype:snoRNA	chrGL000193.1	   175230	   175324	+	ENSG00000252127	ENST00000516318	NA	NA	NA	NA	NA	Unknown
CUST_39325_PI429285431	0.9090526	A	1.1831938	A	0.826942429657214	0	lncRNA	40291-1_{1..480}	n386375|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010itq.1||-1.0388900|-0.2353745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386375|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010itq.1||-1.0388900|-0.2353745	chr5	  9641427	  9641906	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014778	7.8622956	P	7.74463	P	1.08497785743362	0	lncRNA	XR_132555	XR_132555	XR_132555	NA	Hs.597483	LOC100507516	uncharacterized LOC100507516	NA	THC2523703	NA	"PREDICTED: Homo sapiens hypothetical LOC100507516 (LOC100507516), miscRNA [XR_132555]"	chr8:54427644-54427585	hs|8q11.23	Agilent_HUMAN_G3V2	XR_132555	XR_132555	chr8	 54427585	 54427644	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21335_PI429285431	1.2008562	A	0.92520416	A	1.21054108136976	0	lncRNA	22959-1_{1..3000}	lnc-C8orf48-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C8orf48-2:1	chr8	 13196956	 13199955	+	lnc-C8orf48-2	lnc-C8orf48-2:1	ENSG00000253932.1	RP11-10C8.2	DLC1	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30chr8:13186956-13210263"	NA	inner
LNCA_21_P0014089	4.7674026	P	4.444578	P	1.25077700388296	0	lncRNA	XR_108401	XR_108401	XR_108401	NA	NA	LOC100506831	uncharacterized LOC100506831	NA	THC2549847	NA	"PREDICTED: Homo sapiens hypothetical LOC100506831 (LOC100506831), miscRNA [XR_108401]"	chr2:179298745-179298804	hs|2q31.2	Agilent_HUMAN_G3V2	XR_108401	XR_108401	chr2	179298745	179298804	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7119_PI429285431	4.0320387	P	4.160975	P	0.914505467203138	0	lncRNA	7056-1_{1..217}	"transcript_id ""ENST00000413328.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413328.1"" | genecode_v17"	chrX	140013903	140014119	+	ENSG00000229269.1	ENST00000413328.1	RP11-298A8.2	RP11-298A8.2-001	SPANXB2	NA	chrX:140084756-140085871	inter
CUST_49683_PI429285431	2.9414332	A	3.7857404	P	0.556978212729674	0	lncRNA	53460-1_{1..1135}	hg19_lincRNAsTranscripts_TCONS_l2_00027036 range=chr7:5862791-5894066 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027036 range=chr7:5862791-5894066 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  5862791	  5863925	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5089_PI429285431	0.9053879	A	0.8994394	A	1.00413169802984	0	lncRNA	5029-1_{1..427}	"transcript_id ""ENST00000554815.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554815.1"" | genecode_v17"	chr15	 20554571	 20554997	+	ENSG00000258654.1	ENST00000554815.1	RP11-509A17.3	RP11-509A17.3-003	NA	NA	NA	inter
CUST_18492_PI429285431	5.375886	P	5.1459355	P	1.17279470903392	0	lncRNA	20210-1_{1..2913}	lnc-ARHGEF35-1:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ARHGEF35-1:18	chr7	143947138	143950050	-	lnc-ARHGEF35-1	lnc-ARHGEF35-1:18	ENSG00000170356	OR2A20P	OR2A7	NA	chr7:143955789-143956721	inter
CUST_36254_PI429285431	2.6433434	A	3.2426052	P	0.660091625496532	0	lncRNA	37496-1_{1..2956}	n344789|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_338|NULL|-1.3065000|-0.1362550	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n344789|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_338|NULL|-1.3065000|-0.1362550	chr8	103817744	103820699	+	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40"	NA	inter
LNCA_21_P0014706	0.9681368	A	0.919669	A	1.03416601461386	0	lncRNA	XR_112271	XR_112271	XR_112271	NA	NA	LOC100508751	uncharacterized LOC100508751	NA	THC2671701	NA	"PREDICTED: Homo sapiens hypothetical LOC100508751 (LOC100508751), miscRNA [XR_112271]"	chr2:895983-895924	hs|2p25.3	Agilent_HUMAN_G3V2	XR_112271	XR_112271	chr2	   895924	   895983	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39327_PI429285431	4.3679347	P	4.3675194	P	1.00028790546091	0	lncRNA	40293-1_{1..1073}	n386382|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ixi.1||1.2656400|-0.2157308	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386382|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ixi.1||1.2656400|-0.2157308	chr5	 68902925	 68903997	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_227_PI429201921	2.9822805	A	3.0753171	A	0.937547311342523	0	lncRNA	177-1_{1..3000}	TC01005758.hg.1	TCONS_00000629-XLOC_000995 // Rinn lincRNAs // linc-FCGR1B-10 chr1:-:142950834-142956716 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:142950834-142956716	NA	Affy_HUMAN_HTA2.0	TCONS_00000629-XLOC_000995	linc-FCGR1B-10	chr1	142950834	142956716	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51296_PI429285431	5.1856103	P	3.3238635	P	3.63447454184846	0	lncRNA	54900-1_{1..2187}	hg19_lincRNAsTranscripts_TCONS_l2_00008987 range=chr15:32809554-32828628 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008987 range=chr15:32809554-32828628 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 32809554	 32811740	-	NA	NA	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70"	NA	inter
CUST_5952_PI429285431	1.0660158	A	3.5253186	P	0.181834417138498	0	lncRNA	5881-1_{1..665}	"transcript_id ""ENST00000420427.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420427.1"" | genecode_v17"	chr17	 67957903	 67958567	+	ENSG00000237560.1	ENST00000420427.1	AC004562.1	AC004562.1-001	NA	NA	NA	inter
CUST_43963_PI429285431	4.3748913	P	5.729844	P	0.39094763890938	0	lncRNA	48668-1_{1..2868}	"gi|374532825|ref|NR_046258.1| Homo sapiens uncharacterized LOC100216479 (LOC100216479), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374532825|ref|NR_046258.1| Homo sapiens uncharacterized LOC100216479 (LOC100216479), transcript variant 1, non-coding RNA"	Chr2	131174323	131177190	-	100216479	NR_046258.1	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40"	NA	inter
CUST_41223_PI429285431	0.9197823	A	0.90806687	A	1.0081535781037	0	lncRNA	42118-1_{1..95}	ENST00000583098 ncrna:miRNA chromosome:GRCh37:13:55748589:55748683:1 gene:ENSG00000264387 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583098 ncrna:miRNA chromosome:GRCh37:13:55748589:55748683:1 gene:ENSG00000264387 gene_biotype:miRNA transcript_biotype:miRNA	chr13	 55748589	 55748683	+	ENSG00000264387	ENST00000583098	NA	NA	NA	NA	NA	inter
CUST_25132_PI429285431	0.9043069	A	0.894376	A	1.00690732159524	0	lncRNA	26670-1_{1..500}	lnc-HMGB4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMGB4-1:3	chr1	 34339146	 34339645	+	lnc-HMGB4-1	lnc-HMGB4-1:3	ENSG00000231163.1	AL121980.1	CSMD2	NA	chr1:34329146-34349309	inner
CUST_25669_PI429285431	6.9528275	P	6.8628063	P	1.06438582319033	0	lncRNA	27198-1_{1..585}	lnc-RP11-582J16.5.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-582J16.5.1-3:1	chr8	 22424548	 22425132	-	lnc-RP11-582J16.5.1-3	lnc-RP11-582J16.5.1-3:1	ENSG00000254230.1	RP11-582J16.3	SORBS3	"hg19_refFlat_SORBS3:range=chr8:22423934-224322415'pad=0,hg19_refFlat_SORBS3:range=chr8:22423934-224322415'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.00;hg19_refFlat_SORBS3:range=chr8:22412020-224322415'pad=0,hg19_refFlat_SORBS3:range=chr8:22412020-224322415'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.00chr8:22414548-22433008"	NA	inner
CUST_46514_PI429285431	2.8235366	A	3.198008	P	0.771387995641951	0	lncRNA	50705-1_{1..1016}	"gi|224177504|ref|NR_026998.1| Homo sapiens uncharacterized LOC91450 (LOC91450), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224177504|ref|NR_026998.1| Homo sapiens uncharacterized LOC91450 (LOC91450), non-coding RNA"	Chr15	 78285575	 78286590	-	91450	NR_026998.1	NA	NA	NA	NA	NA	inter
CUST_43144_PI429285431	1.4745619	A	0.8946692	A	1.49473807381612	0	lncRNA	47958-1_{1..1191}	ENST00000594472 havana:sense_intronic chromosome:GRCh37:2:39219420:39220977:-1 gene:ENSG00000229692 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000594472 havana:sense_intronic chromosome:GRCh37:2:39219420:39220977:-1 gene:ENSG00000229692 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr2	 39219420	 39220610	-	ENSG00000229692	ENST00000594472	NA	NA	SOS1	NA	chr2:39209420-39230977	inner
CUST_3784_PI429285431	0.9235306	A	0.9076912	A	1.01103952623562	0	lncRNA	3752-1_{1..456}	"transcript_id ""ENST00000447757.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447757.1"" | genecode_v17"	chr10	107568533	107568988	-	ENSG00000229466.1	ENST00000447757.1	RP11-56I23.1	RP11-56I23.1-001	NA	NA	NA	inter
LNCA_19_P00322545	6.77915	P	6.8266525	P	0.967609943400631	0	lncRNA	TCONS_00016491	NA	NA	NA	NA	XLOC_007868	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007868), lincRNA [TCONS_00016491]"	chr9:132266181-132266122	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_00016491	TCONS_00016491	chr9	132266122	132266181	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35115_PI429285431	0.89521194	A	1.2557089	A	0.778896229846336	0	lncRNA	36521-1_{1..3000}	n342084|AK127122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4566|NULL|-0.1558450|-0.3623664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342084|AK127122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4566|NULL|-0.1558450|-0.3623664	chr6	 88881979	 88884978	+	NA	NA	NA	NA	CNR1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10chr6:88871979-88875767"	NA	inter
CUST_34795_PI429285431	2.1497688	A	3.184649	P	0.488056406437132	0	lncRNA	36232-1_{1..855}	n341703|AY196293|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4175|NULL|-1.1631000|-0.3315279	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341703|AY196293|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4175|NULL|-1.1631000|-0.3315279	chr9	 79056581	 79057435	+	NA	NA	NA	NA	GCNT1	NA	chr9:79056582-79122332	inner
CUST_22701_PI429285431	4.5834055	P	4.77341	P	0.87660298704477	0	lncRNA	24284-1_{1..546}	lnc-RIMS3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RIMS3-2:1	chr1	 40982667	 40983212	-	lnc-RIMS3-2	lnc-RIMS3-2:1	ENSG00000238186.1	RP11-656D10.6	DEM1	NA	chr1:40974433-40982228	inter
CUST_14145_PI429285431	2.9405708	A	2.1739542	A	1.70127528055343	0	lncRNA	15796-1_{1..1053}	lnc-ANO10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANO10-1:1	chr3	 43393090	 43394142	-	lnc-ANO10-1	lnc-ANO10-1:1	XLOC_003102	linc-C3orf39	SNRK	NA	chr3:43383090-43392635	inter
CUST_11900_PI429285431	0.9161408	A	0.91843534	A	0.998410810169919	0	lncRNA	13482-1_{1..747}	lnc-TGFBRAP1-6:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGFBRAP1-6:6	chr2	105467770	105468516	-	lnc-TGFBRAP1-6	lnc-TGFBRAP1-6:6	XLOC_002241	linc-MFSD9-15	POU3F3	NA	chr2:105471969-105473471	inter
CUST_326_PI429285431	4.633557	P	4.3630567	P	1.20622605209154	0	lncRNA	318-1_{1..826}	"transcript_id ""ENST00000440116.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000440116.2"" | genecode_v17"	chr1	 95975672	 95976497	+	ENSG00000228971.2	ENST00000440116.2	RP11-286B14.1	RP11-286B14.1-003	NA	NA	NA	inter
CUST_1891_PI429285431	10.866061	P	10.643522	P	1.16678520670703	0	lncRNA	1882-1_{1..430}	"transcript_id ""ENST00000503009.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503009.1"" | genecode_v17"	chr4	135345022	135345451	+	ENSG00000251291.1	ENST00000503009.1	RP11-400D2.3	RP11-400D2.3-001	NA	NA	NA	inter
CUST_12263_PI429285431	0.9076357	A	2.0338216	A	0.458125286314405	0	lncRNA	13870-1_{1..431}	lnc-FAM101A-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM101A-2:4	chr12	124725313	124725743	+	lnc-FAM101A-2	lnc-FAM101A-2:4	XLOC_009927	linc-FAM101A-2	ZNF664-FAM101A	NA	chr12:124715313-124735562	inner
CUST_18607_PI429285431	0.90612364	A	0.88638735	A	1.01377415523416	0	lncRNA	20314-1_{1..1535}	lnc-MYC-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYC-2:4	chr8	128951754	128953288	+	lnc-MYC-2	lnc-MYC-2:4	ENSG00000249859	PVT1	NA	NA	NA	inter
CUST_10253_PI429285431	2.3487542	A	0.8945683	A	2.74001900524034	0	lncRNA	11780-1_{1..891}	lnc-UTP11L-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UTP11L-4:1	chr1	 38678681	 38679571	+	lnc-UTP11L-4	lnc-UTP11L-4:1	XLOC_000149	linc-AKIRIN1-2	NA	NA	NA	inter
LNCA_21_P0009036	0.92590106	A	0.9094168	A	1.01149154462054	0	lncRNA	TCONS_00024661	NA	NA	NA	NA	XLOC_011949	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011949), lincRNA [TCONS_00024661]"	chr16:54923664-54923605	hs|16q12.2	Agilent_HUMAN_G3V2	TCONS_00024661	TCONS_00024661	chr16	 54923605	 54923664	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18681_PI429285431	0.8959118	A	0.8864953	A	1.0065483678433	0	lncRNA	20382-1_{1..737}	lnc-KCNH8-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-KCNH8-3:1	chr3	 18567879	 18568615	+	lnc-KCNH8-3	lnc-KCNH8-3:1	ENSG00000228956	AC144521.1	NA	NA	NA	inter
LNCA_21_P0013115	4.7021766	P	5.326085	P	0.64891058297521	0	lncRNA	TCONS_l2_00025016	NA	NA	NA	NA	XLOC_l2_013192	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013192), lincRNA [TCONS_l2_00025016]"	chr6:160908504-160908445	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_l2_00025016	TCONS_l2_00025016	chr6	160908445	160908504	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51673_PI429285431	1.0944877	A	0.92134935	A	1.12750853154809	0	lncRNA	55235-2_{3001..4597}	hg19_lincRNAsTranscripts_TCONS_l2_00011429 range=chr17:66121254-66140971 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011429 range=chr17:66121254-66140971 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 66124254	 66125850	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11882_PI429285431	2.51675	A	2.6007273	A	0.94345309548564	0	lncRNA	13464-1_{1..1176}	lnc-CTD-2134A5.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2134A5.2.1-2:1	chr14	104345741	104346916	+	lnc-CTD-2134A5.2.1-2	lnc-CTD-2134A5.2.1-2:1	XLOC_010945	linc-TDRD9-2	NA	NA	NA	inter
LNCA_21_P0005245	1.8829329	A	2.1570258	A	0.826970115333552	0	lncRNA	ENST00000448260	NA	NA	NA	NA	XLOC_006163	NA	ENST00000448260	NA	NA	"BROAD Institute lincRNA (XLOC_006163), lincRNA [TCONS_00013038]"	chr7:89123509-89123568	hs|7q21.13	Agilent_HUMAN_G3V2	ENST00000448260	ENST00000448260	chr7	 89123509	 89123568	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17809_PI429285431	1.0784665	A	1.7211055	A	0.640540190507827	0	lncRNA	19546-1_{1..1537}	lnc-COX10-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COX10-1:4	chr17	 14120002	 14121538	+	lnc-COX10-1	lnc-COX10-1:4	XLOC_012115	linc-HS3ST3B1	COX10	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80chr17:14110002-14111996"	NA	inter
CUST_28558_PI429285431	0.92559785	A	0.9160856	A	1.00661517351031	0	lncRNA	30235-1_{1..831}	n325912|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049341|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049341|-0.0501424|-0.3255499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325912|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049341|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049341|-0.0501424|-0.3255499	chr10	 92212453	 92213283	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10"	NA	inter
LNCA_21_P0006661	2.7539496	A	2.663353	A	1.064810424187	0	lncRNA	ENST00000450270	XR_109019	XR_109019	NA	Hs.128298	XLOC_008416	NA	ENST00000450270	THC2662315	NA	"PREDICTED: Homo sapiens hypothetical LOC100507531 (LOC100507531), miscRNA [XR_109019]"	chr10:25971451-25971510	hs|10p12.1	Agilent_HUMAN_G3V2	ENST00000450270	ENST00000450270	chr10	 25971451	 25971510	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28784_PI429285431	0.9126198	A	0.92174196	A	0.993696948610548	0	lncRNA	30491-1_{1..794}	n326190|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092238|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092238|-1.0428600|-0.2784929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326190|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092238|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092238|-1.0428600|-0.2784929	chr1	229077214	229078007	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22_PI429201921	6.8117065	P	6.8651185	P	0.963654571208936	0	lncRNA	23-1_{1..952}	TC14001745.hg.1	 TCONS_l2_00007786-XLOC_l2_004222 // Broad TUCP // linc-EXD2-2 chr14:+:69328477-69329425 // chr14 // 100 // 100 // 0 // --- // 0///TCONS_l2_00007785-XLOC_l2_004222 // Broad TUCP // linc-EXD2-2 chr14:+:69328472-69329314 // chr14 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr14:+:69328472-69329314	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00007785-XLOC_l2_004222	linc-EXD2-2	chr14	 69328472	 69329314	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17241_PI429285431	0.90276384	A	0.9017541	A	1.00070014342016	0	lncRNA	18959-1_{1..1519}	lnc-KDM5D-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KDM5D-4:1	chrY	 22686154	 22687672	-	lnc-KDM5D-4	lnc-KDM5D-4:1	XLOC_008328	linc-KDM5D-2	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-24.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_22608_PI429285431	0.89311045	A	1.143329	A	0.840769039760601	0	lncRNA	24193-1_{1..567}	lnc-KCNMB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNMB1-1:1	chr5	169913021	169913587	-	lnc-KCNMB1-1	lnc-KCNMB1-1:1	ENSG00000253858.1	CTB-147C13.1	KCNIP1	NA	chr5:169903021-169923411	inner
CUST_47105_PI429285431	3.3541908	P	3.8932579	P	0.688215791013525	0	lncRNA	51186-1_{1..1849}	"gi|397139712|ref|XR_132655.2| PREDICTED: Homo sapiens uncharacterized LOC100652911 (LOC100652911), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139712|ref|XR_132655.2| PREDICTED: Homo sapiens uncharacterized LOC100652911 (LOC100652911), misc_RNA"	Chr19	 35396219	 35398067	+	100652911	XR_132655.3	NA	NA	NA	NA	NA	inter
CUST_47850_PI429285431	5.6113353	P	5.350013	P	1.198576755081	0	lncRNA	51755-1_{1..567}	"gi|397140229|ref|XR_159183.1| PREDICTED: Homo sapiens uncharacterized LOC100996748, transcript variant 1 (LOC100996748), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397140229|ref|XR_159183.1| PREDICTED: Homo sapiens uncharacterized LOC100996748, transcript variant 1 (LOC100996748), misc_RNA"	NA	NA	NA	NA	NA	XR_159183.1	NA	NA	NA	NA	NA	Unknown
CUST_168_PI429285431	8.170794	P	8.3596945	P	0.877274050609906	0	lncRNA	159-1_{1..434}	"transcript_id ""ENST00000451828.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451828.1"" | genecode_v17"	chr1	 17198753	 17199186	+	ENSG00000228549.1	ENST00000451828.1	RP11-108M9.3	RP11-108M9.3-003	NA	NA	NA	inter
CUST_25220_PI429285431	0.98458016	A	1.1870433	A	0.869065524251979	0	lncRNA	26751-1_{1..423}	lnc-CFTR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CFTR-1:1	chr7	117355812	117356234	+	lnc-CFTR-1	lnc-CFTR-1:1	ENSG00000227601.1	AC004240.2	CTTNBP2	NA	chr7:117350705-117366025	inner
CUST_3663_PI429285431	0.92650926	A	2.5652242	A	0.321142400035315	0	lncRNA	3632-1_{1..425}	"transcript_id ""ENST00000450980.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450980.1"" | genecode_v17"	chr10	 38536850	 38537274	+	ENSG00000226113.1	ENST00000450980.1	RP11-672F9.1	RP11-672F9.1-001	NA	NA	NA	inter
LNCA_21_P0007089	3.3315728	P	1.835687	A	2.82037265874315	0	lncRNA	ENST00000455566	NA	AB040974	NA	NA	PPP2R2D	"protein phosphatase 2, regulatory subunit B, delta"	ENST00000455566	THC2665210	GO:0010458|GO:0007165|GO:0007067|GO:0007049|GO:0005737|GO:0008601|GO:0000159|GO:0005654|GO:0008195|GO:0051301|GO:0005829	"BROAD Institute lincRNA (XLOC_008672), lincRNA [TCONS_00018859]"	chr10:133773237-133773296	hs|10q26.3	Agilent_HUMAN_G3V2	ENST00000455566	ENST00000455566	chr10	133773237	133773296	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49002_PI429285431	0.95545685	A	0.9631713	A	0.994667021821937	0	lncRNA	52833-1_{1..1984}	hg19_lincRNAsTranscripts_TCONS_l2_00019722 range=chr3:197339131-197354746 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019722 range=chr3:197339131-197354746 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	197339131	197341114	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44771_PI429285431	1.9883841	A	1.4182906	A	1.48461978462291	0	lncRNA	49311-3_{6001..6853}	"gi|289063384|ref|NR_033327.1| Homo sapiens EF-hand domain (C-terminal) containing 1 (EFHC1), transcript variant B, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|289063384|ref|NR_033327.1| Homo sapiens EF-hand domain (C-terminal) containing 1 (EFHC1), transcript variant B, non-coding RNA"	Chr6	 52290994	 52291846	+	114327	NR_033327.1	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20"	NA	inter
CUST_2779_PI429285431	6.35321	P	5.725368	P	1.54525185828766	0	lncRNA	2762-1_{1..557}	"transcript_id ""ENST00000439823.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439823.1"" | genecode_v17"	chr7	 22629324	 22629880	+	ENSG00000232949.1	ENST00000439823.1	AC002480.4	AC002480.4-001	NA	NA	NA	inter
CUST_33062_PI429285431	0.90035796	A	0.898481	A	1.00130185621206	0	lncRNA	34672-1_{1..2502}	n339750|AX747649|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2196|NULL|-0.9606370|-0.1518125	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339750|AX747649|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2196|NULL|-0.9606370|-0.1518125	chr20	 61404868	 61407369	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11435_PI429285431	4.5146737	P	4.8622313	P	0.785913478762557	0	lncRNA	13003-1_{1..563}	lnc-RP11-327F22.5.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RP11-327F22.5.1-3:2	chr16	 51069447	 51070009	+	lnc-RP11-327F22.5.1-3	lnc-RP11-327F22.5.1-3:2	XLOC_011719	linc-CHD9-9	NA	NA	NA	inter
CUST_45741_PI429285431	0.98096275	A	0.92393625	A	1.0403193753492	0	lncRNA	50090-1_{1..3000}	"gi|378744220|ref|NR_046382.1| Homo sapiens zinc finger protein 195 (ZNF195), transcript variant 10, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378744220|ref|NR_046382.1| Homo sapiens zinc finger protein 195 (ZNF195), transcript variant 10, non-coding RNA"	Chr11	  3379157	  3382156	-	7748	NR_046382.1	NA	NA	NA	NA	NA	inter
CUST_51155_PI429285431	0.90899503	A	1.3375359	A	0.743012882594277	0	lncRNA	54777-1_{1..2146}	hg19_lincRNAsTranscripts_TCONS_l2_00008016 range=chr14:35397245-35442867 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008016 range=chr14:35397245-35442867 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr14	 35397245	 35399390	-	NA	NA	NA	NA	SRP54	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-62.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50chr14:35452104-35452867"	NA	inter
CUST_40301_PI429285431	2.8516464	P	3.4019241	P	0.682888668553401	0	lncRNA	41105-1_{1..3000}	n408308|NR_028596|lncRNA|Homosapiens||RefGeneNoncode|NR_028596||4.0763600|-0.2869226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408308|NR_028596|lncRNA|Homosapiens||RefGeneNoncode|NR_028596||4.0763600|-0.2869226	chr4	148402068	148405067	+	NA	NA	NA	NA	EDNRA	NA	chr4:148392068-148466106	inter
CUST_10746_PI429285431	1.2605523	A	1.1823654	A	1.0556904726442	0	lncRNA	12282-1_{1..297}	lnc-RYR2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RYR2-2:1	chr1	238608036	238608332	+	lnc-RYR2-2	lnc-RYR2-2:1	XLOC_000635	linc-CHRM3	NA	NA	NA	inter
LNCA_21_P0006779	0.9387318	A	0.9236869	A	1.01048289455768	0	lncRNA	ENST00000418379	NA	BC030278	NA	Hs.382666	XLOC_008901	NA	ENST00000418379	NA	NA	"BROAD Institute lincRNA (XLOC_008901), lincRNA [TCONS_00018021]"	chr10:92162340-92162281	hs|10q23.31	Agilent_HUMAN_G3V2	ENST00000418379	ENST00000418379	chr10	 92162281	 92162340	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5752_PI429285431	7.910367	P	8.148532	P	0.847822994178558	0	lncRNA	5677-1_{1..1871}	"transcript_id ""ENST00000577684.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577684.1"" | genecode_v17"	chr17	 18314473	 18316343	+	ENSG00000220161.4	ENST00000577684.1	RP1-37N7.3	RP1-37N7.3-001	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
CUST_33860_PI429285431	5.823617	P	4.046317	P	3.4278405443708	0	lncRNA	35404-1_{1..2122}	n340647|CR611332|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3109|NULL|-1.0513200|-0.3611435	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340647|CR611332|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3109|NULL|-1.0513200|-0.3611435	chr5	139496842	139498963	+	NA	NA	NA	NA	C5orf53	NA	chr5:139505521-139508391	inner
CUST_23309_PI429285431	6.8430724	P	6.85982	P	0.988458567545175	0	lncRNA	24880-1_{1..540}	lnc-TUFM-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUFM-3:1	chr16	 28833004	 28833543	-	lnc-TUFM-3	lnc-TUFM-3:1	ENSG00000260796.1	RP11-1348G14.5	ATXN2L	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70chr16:28834414-28843354"	NA	inter
CUST_43381_PI429285431	1.0947063	A	0.9495083	A	1.10588241768313	0	lncRNA	48195-1_{1..527}	"gi|410170381|ref|XR_109875.3| PREDICTED: Homo sapiens uncharacterized LOC727721 (LOC727721), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170381|ref|XR_109875.3| PREDICTED: Homo sapiens uncharacterized LOC727721 (LOC727721), misc_RNA"	NA	NA	NA	NA	NA	XR_109875.3	NA	NA	NA	NA	NA	Unknown
CUST_149_PI429201921	5.725627	P	5.9381995	P	0.862997030300539	0	lncRNA	130-2_{3001..4025}	TC05003250.hg.1	TCONS_l2_00023903-XLOC_l2_012234 // Broad TUCP // linc-CXCL14 chr5:-:135078141-135082144 // chr5 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00023904-XLOC_l2_012234 // Broad TUCP // linc-CXCL14 chr5:-:135078144-135082167 // chr5 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr5:-:135078141-135082144	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00023903-XLOC_l2_012234	linc-CXCL14	chr5	135078141	135082144	-	NA	NA	NA	NA	PRDM16	NA	chr1:2985742-2995001	Unknown
CUST_42400_PI429285431	0.9081572	A	0.9048074	A	1.00232460213306	0	lncRNA	45096-1_{1..73}	ENST00000364155 ncrna:snoRNA chromosome:GRCh37:21:17657017:17657089:-1 gene:ENSG00000201025 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364155 ncrna:snoRNA chromosome:GRCh37:21:17657017:17657089:-1 gene:ENSG00000201025 gene_biotype:snoRNA transcript_biotype:snoRNA	chr21	 17657017	 17657089	-	ENSG00000201025	ENST00000364155	NA	NA	NA	NA	NA	inter
CUST_44731_PI429285431	1.8268099	A	0.9282432	A	1.86421298980043	0	lncRNA	49285-1_{1..3000}	"gi|311893290|ref|NR_037178.1| Homo sapiens uncharacterized LOC100294145 (LOC100294145), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|311893290|ref|NR_037178.1| Homo sapiens uncharacterized LOC100294145 (LOC100294145), transcript variant 2, non-coding RNA"	NT_113891.2	  4306477	  4309476	+	100294145	NR_037178.1	NA	NA	NA	NA	NA	Unknown
CUST_42254_PI429285431	0.9713831	A	0.9288318	A	1.02993357886582	0	lncRNA	44509-1_{1..124}	ENST00000516263 ncrna:rRNA chromosome:GRCh37:10:75466248:75466371:1 gene:ENSG00000252072 gene_biotype:rRNA transcript_biotype:rRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516263 ncrna:rRNA chromosome:GRCh37:10:75466248:75466371:1 gene:ENSG00000252072 gene_biotype:rRNA transcript_biotype:rRNA	chr10	 75466248	 75466371	+	ENSG00000252072	ENST00000516263	NA	NA	AGAP5	NA	chr10:75456248-75457554	inter
CUST_42878_PI429285431	4.812971	P	4.745532	P	1.0478549320592	0	lncRNA	45950-1_{1..94}	ENST00000516349 ncrna:snoRNA chromosome:GRCh37:8:132445023:132445116:-1 gene:ENSG00000252158 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516349 ncrna:snoRNA chromosome:GRCh37:8:132445023:132445116:-1 gene:ENSG00000252158 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	132445023	132445116	-	ENSG00000252158	ENST00000516349	NA	NA	NA	NA	NA	inter
CUST_5974_PI429285431	4.382751	P	3.7289062	P	1.57335562560196	0	lncRNA	5902-1_{1..1664}	"transcript_id ""ENST00000580169.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580169.1"" | genecode_v17"	chr17	 73161681	 73163344	-	ENSG00000265242.1	ENST00000580169.1	RP11-649A18.7	RP11-649A18.7-001	SUMO2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70chr17:73163825-73173344"	NA	inter
CUST_19275_PI429285431	5.2577705	P	5.5857925	P	0.796627948223801	0	lncRNA	20943-1_{1..422}	lnc-SMG6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMG6-3:1	chr17	  1946369	  1946790	-	lnc-SMG6-3	lnc-SMG6-3:1	ENSG00000262533.1	RP11-667K14.4	DPH1	"hg19_refFlat_OVCA2:range=chr17:1945342-19463985'pad=0,hg19_refFlat_OVCA2:range=chr17:1945342-19463985'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90chr17:1936369-1946725"	NA	inner
CUST_19390_PI429285431	8.291777	P	8.8232765	P	0.691835284488128	0	lncRNA	21052-1_{1..1350}	lnc-RBFA-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RBFA-1:4	chr18	 77838683	 77840032	+	lnc-RBFA-1	lnc-RBFA-1:4	ENSG00000261126.1	RP11-795F19.1	NA	NA	NA	inter
CUST_41856_PI429285431	0.90456146	A	1.0183727	A	0.924143478048252	0	lncRNA	43508-1_{1..109}	ENST00000585264 ncrna:miRNA chromosome:GRCh37:15:35664457:35664565:-1 gene:ENSG00000265102 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585264 ncrna:miRNA chromosome:GRCh37:15:35664457:35664565:-1 gene:ENSG00000265102 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 35664457	 35664565	-	ENSG00000265102	ENST00000585264	NA	NA	ATPBD4	NA	chr15:35663170-35674565	inner
CUST_35013_PI429285431	5.011166	P	5.1907663	P	0.882947583855029	0	lncRNA	36427-1_{1..369}	n341947|AF242771|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4428|NULL|-1.2448300|-0.4511384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341947|AF242771|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4428|NULL|-1.2448300|-0.4511384	chr12	 65089970	 65090338	-	NA	NA	NA	NA	RASSF3	NA	chr12:65079970-65091347	inner
CUST_48075_PI429285431	2.5831819	A	2.1396456	A	1.35993368267628	0	lncRNA	51951-1_{1..1296}	"gi|310114590|ref|XR_112616.1| PREDICTED: Homo sapiens uncharacterized LOC389199 (LOC389199), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310114590|ref|XR_112616.1| PREDICTED: Homo sapiens uncharacterized LOC389199 (LOC389199), misc_RNA"	NA	NA	NA	NA	NA	XR_112616.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002491	1.0071099	A	0.96593535	A	1.02895119197434	0	lncRNA	TCONS_00004379	NA	NA	NA	NA	XLOC_002264	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002264), lincRNA [TCONS_00004379]"	chr2:111099669-111099610	hs|2q13	Agilent_HUMAN_G3V2	TCONS_00004379	TCONS_00004379	chr2	111099610	111099669	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33425_PI429285431	1.1997089	A	0.9476894	A	1.19087294553557	0	lncRNA	35003-1_{1..2406}	n340153|BC039338|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2613|NULL|-0.8868100|-0.3098106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n340153|BC039338|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2613|NULL|-0.8868100|-0.3098106	chr10	118918166	118920571	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23693_PI429285431	6.2279997	P	6.589076	P	0.778583512925407	0	lncRNA	25258-1_{1..422}	lnc-ACP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACP2-2:1	chr11	 47293627	 47294048	-	lnc-ACP2-2	lnc-ACP2-2:1	ENSG00000256746.1	RP11-17G12.3	MADD	NA	chr11:47290927-47303661	inner
CUST_41166_PI429285431	0.997218	A	0.9288169	A	1.04855395536581	0	lncRNA	41988-1_{1..76}	ENST00000401250 ncrna:miRNA chromosome:GRCh37:8:100549014:100549089:-1 gene:ENSG00000216069 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401250 ncrna:miRNA chromosome:GRCh37:8:100549014:100549089:-1 gene:ENSG00000216069 gene_biotype:miRNA transcript_biotype:miRNA	chr8	100549014	100549089	-	ENSG00000216069	ENST00000401250	NA	NA	VPS13B	NA	chr8:100539014-100559089	inner
CUST_2924_PI429285431	1.0103729	A	0.9295982	A	1.05758579171567	0	lncRNA	2905-1_{1..489}	"transcript_id ""ENST00000458437.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458437.1"" | genecode_v17"	chr7	125078165	125078653	+	ENSG00000227869.1	ENST00000458437.1	RP11-807H17.1	RP11-807H17.1-001	NA	NA	NA	inter
CUST_18123_PI429285431	0.9296692	A	1.0910401	A	0.894174990311532	0	lncRNA	19858-1_{1..354}	lnc-UBR2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBR2-2:1	chr6	 42423683	 42424036	+	lnc-UBR2-2	lnc-UBR2-2:1	XLOC_005289	linc-UBR2-2	TRERF1	NA	chr6:42413683-42419783	inter
CUST_1719_PI429285431	2.0221608	A	1.9502686	A	1.0510943670515	0	lncRNA	1704-1_{1..2802}	"transcript_id ""ENST00000512873.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512873.1"" | genecode_v17"	chr4	 27219101	 27221902	+	ENSG00000249699.1	ENST00000512873.1	RP11-415C15.2	RP11-415C15.2-001	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20"	NA	inter
CUST_40470_PI429285431	6.920703	P	7.0476213	P	0.915785545999329	0	lncRNA	41239-1_{1..587}	n409400|NR_033799|lncRNA|Homosapiens||RefGeneNoncode|NR_033799||-0.7589610|-0.2179498	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409400|NR_033799|lncRNA|Homosapiens||RefGeneNoncode|NR_033799||-0.7589610|-0.2179498	chr17	  1524912	  1525498	+	NA	NA	NA	NA	PRPF8	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90chr17:1553923-1584839"	NA	inner
LNCA_21_P0006459	1.0278223	A	0.9884117	A	1.02769388584579	0	lncRNA	ENST00000468762	NA	NA	NA	NA	XLOC_008209	NA	ENST00000468762	NA	NA	"BROAD Institute lincRNA (XLOC_008209), lincRNA [TCONS_00017082]"	chrX:112859655-112859596	hs|Xq23	Agilent_HUMAN_G3V2	ENST00000468762	ENST00000468762	chrX	112859596	112859655	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15611_PI429285431	2.4417052	A	2.9901607	A	0.683751737929481	0	lncRNA	17298-1_{1..418}	lnc-MGAT1-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MGAT1-2:8	chr5	180258725	180259142	-	lnc-MGAT1-2	lnc-MGAT1-2:8	XLOC_005110	linc-MGAT1-2	NA	NA	NA	inter
CUST_17051_PI429285431	1.2915295	A	0.943263	A	1.27303007241283	0	lncRNA	18761-1_{1..825}	lnc-BTN3A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTN3A2-1:1	chr6	 26339929	 26340753	+	lnc-BTN3A2-1	lnc-BTN3A2-1:1	XLOC_005209	linc-BTN3A2	NA	NA	NA	inter
CUST_8583_PI429285431	5.26502	P	5.0292363	P	1.17754622952045	0	lncRNA	10139-2_{3001..3639}	lnc-ZXDA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZXDA-1:1	chrX	 57623616	 57624254	-	lnc-ZXDA-1	lnc-ZXDA-1:1	ENSG00000249187	ENST00000506499	ZXDB	"hg19_refFlat_ZXDA:range=chrX:57934455-579368545'pad=0,hg19_refFlat_ZXDA:range=chrX:57934455-579368545'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30;hg19_refFlat_ZXDB:range=chrX:57618482-576208935'pad=0,hg19_refFlat_ZXDB:range=chrX:57618482-576208935'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30chrX:57618269-57623910"	NA	inner
CUST_27208_PI429285431	1.728142	A	1.7910851	A	0.957309213797533	0	lncRNA	28750-1_{1..423}	n324340|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042632|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042632|-1.4354100|-0.2961160	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324340|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042632|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042632|-1.4354100|-0.2961160	chr6	149581526	149581948	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012390	3.827905	P	4.1985207	P	0.773452339514379	0	lncRNA	THC2761499	NA	NA	NA	NA	XLOC_l2_009882	NA	NA	THC2761499	NA	"BROAD Institute lincRNA (XLOC_l2_009882), lincRNA [TCONS_l2_00018851]"	chr3:129637282-129637341	hs|3q22.1	Agilent_HUMAN_G3V2	THC2761499	THC2761499	chr3	129637282	129637341	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14800_PI429285431	0.9179617	A	1.2554922	A	0.791394804953127	0	lncRNA	16461-1_{1..307}	lnc-PAM-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAM-4:2	chr5	101841132	101841438	+	lnc-PAM-4	lnc-PAM-4:2	XLOC_004492	linc-PAM-4	SLCO6A1	NA	chr5:101831132-101834720	inter
CUST_11635_PI429285431	0.9440242	A	0.9572852	A	0.990850290921044	0	lncRNA	13212-1_{1..243}	lnc-LMO7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-LMO7-1:1	chr13	 76455182	 76455424	+	lnc-LMO7-1	lnc-LMO7-1:1	XLOC_010434	linc-CLN5-3	NA	NA	NA	inner
CUST_28944_PI429285431	0.92661834	A	0.92243606	A	1.00290314156739	0	lncRNA	30664-1_{1..401}	n326373|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046191|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046191|-1.1496900|-0.4160944	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326373|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046191|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046191|-1.1496900|-0.4160944	chr1	154227804	154228204	+	NA	NA	NA	NA	UBAP2L	NA	chr1:154217804-154243329	inner
LNCA_19_P00801867	6.7028694	P	6.6812425	P	1.01510354773096	0	lncRNA	XR_112327	XR_112327	XR_112327	NA	Hs.580330	LOC100129434	uncharacterized LOC100129434	NA	THC2486467	NA	"PREDICTED: Homo sapiens hypothetical LOC100129434 (LOC100129434), miscRNA [XR_112327]"	chr2:56402834-56402775	hs|2p16.1	Agilent_HUMAN_G3V2	XR_112327	XR_112327	chr2	 56402775	 56402834	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51755_PI429285431	1.0084062	A	0.92495257	A	1.05955143956659	0	lncRNA	55308-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00012420 range=chr19:23282897-23330993 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012420 range=chr19:23282897-23330993 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 23282897	 23285896	+	NA	NA	NA	NA	ZNF730	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70chr19:23272897-23329769"	NA	inter
CUST_17356_PI429285431	1.397852	A	1.9144845	A	0.699001521017051	0	lncRNA	19076-1_{1..2398}	lnc-COL5A1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL5A1-2:1	chr9	137475038	137477435	+	lnc-COL5A1-2	lnc-COL5A1-2:1	XLOC_007601	linc-COL5A1-2	NA	NA	NA	inter
CUST_27916_PI429285431	1.6807178	A	1.9925659	A	0.805609108406617	0	lncRNA	29517-1_{1..592}	n325160|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280683|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280683|-1.2708200|-0.3417516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325160|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280683|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280683|-1.2708200|-0.3417516	chr2	118231608	118232199	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28192_PI429285431	0.91292226	A	1.1747155	A	0.834050567309676	0	lncRNA	29819-1_{1..391}	n325472|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322862|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322862|-1.4143800|-0.3482614	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325472|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322862|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322862|-1.4143800|-0.3482614	chr2	  3998310	  3998700	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19279_PI429285431	0.90391463	A	0.8984482	A	1.00379622803137	0	lncRNA	20946-2_{3001..3421}	lnc-C8orf83-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C8orf83-2:2	chr8	 93892811	 93893231	-	lnc-C8orf83-2	lnc-C8orf83-2:2	ENSG00000248858.2	RP11-100L22.2	C8orf83	NA	chr8:93895758-93899865	inter
CUST_3176_PI429285431	0.9205231	A	0.9335527	A	0.991009230363977	0	lncRNA	3156-1_{1..488}	"transcript_id ""ENST00000523881.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523881.1"" | genecode_v17"	chr8	 73787094	 73787581	-	ENSG00000253784.1	ENST00000523881.1	RP11-1145L24.1	RP11-1145L24.1-001	KCNB2	NA	chr8:73777094-73803975	inner
CUST_4394_PI429285431	1.2716616	A	2.0417593	A	0.586377763487991	0	lncRNA	4345-1_{1..423}	"transcript_id ""ENST00000547004.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547004.1"" | genecode_v17"	chr12	102350991	102351413	-	ENSG00000258308.1	ENST00000547004.1	RP11-554E23.2	RP11-554E23.2-001	NA	NA	NA	inter
CUST_4236_PI429285431	2.0336525	A	1.1345453	A	1.86491154068195	0	lncRNA	4194-2_{3001..5008}	"transcript_id ""ENST00000553202.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553202.1"" | genecode_v17"	chr12	 44115796	 44117803	-	ENSG00000257742.1	ENST00000553202.1	RP11-350F4.2	RP11-350F4.2-001	PUS7L	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80chr12:44122410-44127803"	NA	inter
CUST_11407_PI429285431	1.3171018	A	1.1124485	A	1.15240937326681	0	lncRNA	12973-1_{1..399}	lnc-EMP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EMP2-1:2	chr16	 10619816	 10620214	-	lnc-EMP2-1	lnc-EMP2-1:2	XLOC_011872	linc-GRIN2A	EMP2	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10chr16:10622279-10629948"	NA	inter
LNCA_21_P0002973	1.1216731	A	1.7371427	A	0.6527173981988	0	lncRNA	TCONS_00006884	NA	NA	NA	NA	XLOC_002698	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002698), lincRNA [TCONS_00006884]"	chr3:70669077-70669136	hs|3p13	Agilent_HUMAN_G3V2	TCONS_00006884	TCONS_00006884	chr3	 70669077	 70669136	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22988_PI429285431	1.5974231	A	1.1570718	A	1.35693470435691	0	lncRNA	24562-1_{1..1814}	lnc-TRIM45-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRIM45-1:1	chr1	117601995	117603808	-	lnc-TRIM45-1	lnc-TRIM45-1:1	ENSG00000236137.1	RP11-27K13.3	TTF2	"hg19_refFlat_CD101:range=chr1:117544440-1175767235'pad=0,hg19_refFlat_CD101:range=chr1:117544440-1175767235'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.20chr1:117602949-117612112"	NA	inter
CUST_45645_PI429285431	0.93053484	A	1.1456463	A	0.861479600790787	0	lncRNA	50022-2_{3001..4059}	"gi|226060981|ref|NR_027428.1| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|226060981|ref|NR_027428.1| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 1, non-coding RNA"	Chr10	 81808989	 81810047	-	219347	NR_027428.1	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20"	NA	inter
CUST_19174_PI429285431	0.9261177	A	0.9150841	A	1.00767722868319	0	lncRNA	20843-1_{1..1698}	lnc-YTHDC2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YTHDC2-1:3	chr5	112771263	112772960	+	lnc-YTHDC2-1	lnc-YTHDC2-1:3	ENSG00000232633.3	CTD-2201G3.1	MCC	NA	chr5:112761263-112782871	inner
CUST_18201_PI429285431	2.5487366	A	1.7782133	A	1.70588843786933	0	lncRNA	19936-1_{1..548}	lnc-NKAIN3-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKAIN3-3:9	chr8	 64098706	 64099253	+	lnc-NKAIN3-3	lnc-NKAIN3-3:9	ENSG00000185728	YTHDF3	YTHDF3	NA	chr8:64088706-64108755	inner
CUST_33954_PI429285431	0.92579865	A	1.3126853	A	0.764778223854591	0	lncRNA	35494-1_{1..3000}	n340759|BC036702|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3222|NULL|-0.8623130|-0.2665760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340759|BC036702|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3222|NULL|-0.8623130|-0.2665760	chr17	 55169505	 55172504	-	NA	NA	NA	NA	AKAP1	"hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00chr17:55162553-55183788"	NA	inner
CUST_49662_PI429285431	4.944721	P	4.612488	P	1.25896048335072	0	lncRNA	53443-1_{1..866}	hg19_lincRNAsTranscripts_TCONS_l2_00026194 range=chr7:128171789-128259308 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026194 range=chr7:128171789-128259308 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	128171789	128172654	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18469_PI429285431	1.3794225	A	2.175516	A	0.575906495890556	0	lncRNA	20190-1_{1..816}	lnc-KIAA1210-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1210-1:2	chrX	118390987	118391802	-	lnc-KIAA1210-1	lnc-KIAA1210-1:2	ENSG00000214992	AKAP16BP	NA	NA	NA	inter
CUST_29426_PI429285431	0.9179006	A	0.92141837	A	0.997564637960286	0	lncRNA	31182-1_{1..224}	n332807|AF056442|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064717|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064717|-1.0042900|-0.1683070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332807|AF056442|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064717|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064717|-1.0042900|-0.1683070	chr5	 10373406	 10373629	+	NA	NA	NA	NA	6-Mar	NA	chr5:10363406-10383630	inner
CUST_9039_PI429285431	6.3292804	P	5.8291526	P	1.41433884491278	0	lncRNA	10565-1_{1..1529}	lnc-UBQLN2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-UBQLN2-2:2	chrX	 56843753	 56845281	+	lnc-UBQLN2-2	lnc-UBQLN2-2:2	ENSG00000204272	RP11-622K12.1	NA	NA	NA	inter
CUST_50287_PI429285431	0.9096523	A	0.9088359	A	1.00056604550153	0	lncRNA	54007-6_{15001..18000}	hg19_lincRNAsTranscripts_TCONS_l2_00028843 range=chr9:76064311-76092053 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028843 range=chr9:76064311-76092053 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 76079311	 76082310	+	NA	NA	NA	NA	NA	"hg19_refFlat_DPP3:range=chr11:66249672-662767225'pad=0,hg19_refFlat_DPP3:range=chr11:66249672-662767225'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60"	NA	inter
CUST_34953_PI429285431	1.3812838	A	1.1490327	A	1.17466640323727	0	lncRNA	36370-1_{1..2737}	n341871|AK124670|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4351|NULL|-0.9130610|-0.2538801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341871|AK124670|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4351|NULL|-0.9130610|-0.2538801	chr12	 27688272	 27691008	-	NA	NA	NA	NA	PPFIBP1	NA	chr12:27678272-27715706	inner
CUST_33243_PI429285431	0.9273659	A	0.92373556	A	1.00251952862643	0	lncRNA	34830-1_{1..2642}	n339946|CR749391|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2395|NULL|-1.1104500|-0.2749518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n339946|CR749391|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2395|NULL|-1.1104500|-0.2749518	chr10	  4621442	  4624083	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50885_PI429285431	1.4493783	A	2.6279626	A	0.441784803842985	0	lncRNA	54528-1_{1..1603}	hg19_lincRNAsTranscripts_TCONS_l2_00006102 range=chr12:8388027-8392561 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006102 range=chr12:8388027-8392561 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  8388027	  8389629	-	NA	NA	NA	NA	FAM90A1	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.17;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20chr12:8378027-8380214"	NA	inter
CUST_50442_PI429285431	2.661413	A	2.9517906	A	0.817688015121438	0	lncRNA	54146-1_{1..267}	hg19_lincRNAsTranscripts_TCONS_l2_00030204 range=chrX:52654080-52654781 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030204 range=chrX:52654080-52654781 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 52654080	 52654346	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003375	0.9822897	A	0.9244946	A	1.04087375619814	0	lncRNA	ENST00000513540	NA	NA	NA	NA	XLOC_003562	NA	ENST00000513540	NA	NA	"BROAD Institute lincRNA (XLOC_003562), lincRNA [TCONS_00007547]"	chr4:66882357-66882416	hs|4q13.2	Agilent_HUMAN_G3V2	ENST00000513540	ENST00000513540	chr4	 66882357	 66882416	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007516	3.3914063	P	3.8383238	P	0.733608622030914	0	lncRNA	TCONS_00020285	NA	NA	NA	NA	XLOC_009629	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009629), lincRNA [TCONS_00020285]"	chr12:6281860-6281919	hs|12p13.31	Agilent_HUMAN_G3V2	TCONS_00020285	TCONS_00020285	chr12	  6281860	  6281919	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47806_PI429285431	0.91678995	A	0.983937	A	0.954523717162692	0	lncRNA	51725-1_{1..2945}	"gi|337299699|ref|NR_038958.1| Homo sapiens uncharacterized LOC100507412 (LOC100507412), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|337299699|ref|NR_038958.1| Homo sapiens uncharacterized LOC100507412 (LOC100507412), non-coding RNA"	NT_167214.1	    97129	   100073	+	100507412	NR_038958.1	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10"	NA	Unknown
CUST_39400_PI429285431	6.4879575	P	6.9946995	P	0.703810040146944	0	lncRNA	40361-3_{6001..9000}	n386585|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010pbf.1||1.3938300|-0.2144233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386585|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010pbf.1||1.3938300|-0.2144233	chr1	149285475	149288474	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-14.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-55.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90"	NA	inter
LNCA_21_P0004898	0.97625864	A	0.92212296	A	1.0382369081975	0	lncRNA	TCONS_00011856	NA	NA	NA	NA	XLOC_005347	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005347), lincRNA [TCONS_00011856]"	chr6:74364525-74364584	hs|6q13	Agilent_HUMAN_G3V2	TCONS_00011856	TCONS_00011856	chr6	 74364525	 74364584	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49326_PI429285431	1.0945913	A	1.3857845	A	0.817225881510111	0	lncRNA	53141-1_{1..294}	hg19_lincRNAsTranscripts_TCONS_l2_00022340 range=chr5:62597333-62597863 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022340 range=chr5:62597333-62597863 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 62597333	 62597626	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3452_PI429285431	0.921496	A	1.2987869	A	0.769881922276731	0	lncRNA	3423-1_{1..663}	"transcript_id ""ENST00000591117.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591117.1"" | genecode_v17"	chr9	 84888374	 84889036	+	ENSG00000228430.4	ENST00000591117.1	RP11-15B24.5	RP11-15B24.5-011	NA	NA	NA	inter
CUST_27639_PI429285431	0.909746	A	0.90728974	A	1.00170399985433	0	lncRNA	29217-1_{1..740}	n324845|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171191|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171191|-1.2716200|-0.4316936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324845|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171191|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171191|-1.2716200|-0.4316936	chr21	 25690376	 25691115	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14490_PI429285431	2.567354	A	2.5838976	A	0.98859834747044	0	lncRNA	16156-1_{1..1132}	lnc-MAPK8IP2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAPK8IP2-1:5	chr22	 51033620	 51034751	+	lnc-MAPK8IP2-1	lnc-MAPK8IP2-1:5	XLOC_014288	linc-MAPK8IP2	MAPK8IP2	NA	chr22:51039131-51043826	inter
CUST_11543_PI429285431	1.0687971	A	1.1115446	A	0.970804364754478	0	lncRNA	13116-1_{1..1881}	lnc-AUH-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AUH-4:1	chr9	 93745268	 93747148	-	lnc-AUH-4	lnc-AUH-4:1	XLOC_007773	linc-DIRAS2-2	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.72;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30"	NA	inter
LNCA_21_P0014346	0.9649844	A	0.91892815	A	1.03243878900051	0	lncRNA	XR_109386	XR_109386	XR_109386	NA	NA	LOC100505899	uncharacterized LOC100505899	NA	THC2520447	NA	"PREDICTED: Homo sapiens hypothetical LOC100505899 (LOC100505899), miscRNA [XR_109386]"	chr17:41322153-41300752	hs|17q21.31	Agilent_HUMAN_G3V2	XR_109386	XR_109386	chr17	 41300752	 41322153	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014411	0.9627095	A	0.91848755	A	1.03112693930316	0	lncRNA	XR_109652	XR_109652	XR_109652	NA	NA	LOC100505651	uncharacterized LOC100505651	NA	THC2630027	NA	"PREDICTED: Homo sapiens hypothetical LOC100505651 (LOC100505651), miscRNA [XR_109652]"	chr20:22213827-22213886	hs|20p11.22	Agilent_HUMAN_G3V2	XR_109652	XR_109652	chr20	 22213827	 22213886	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7477_PI429285431	6.561653	P	6.5305047	P	1.02182511452764	0	lncRNA	9119-1_{1..1804}	lnc-AL590822.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL590822.1-2:1	chr1	  2166695	  2168498	-	lnc-AL590822.1-2	lnc-AL590822.1-2:1	ENSG00000215059	ENST00000414104	SKI	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70chr1:2160134-2176793"	NA	inner
CUST_4162_PI429285431	1.3749597	A	1.522394	A	0.902854679445232	0	lncRNA	4120-1_{1..3000}	"transcript_id ""ENST00000420905.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420905.1"" | genecode_v17"	chr12	 10100736	 10103735	-	ENSG00000231560.1	ENST00000420905.1	AC091814.3	AC091814.3-001	CLEC12A	NA	chr12:10103915-10115935	inner
CUST_35705_PI429285431	8.142709	P	8.198128	P	0.962314918672106	0	lncRNA	37125-1_{1..866}	n342872|BC023631|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5377|NULL|0.2964350|-0.1579922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342872|BC023631|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5377|NULL|0.2964350|-0.1579922	chr9	 99687294	 99688159	-	NA	NA	NA	NA	FAM22G	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40chr9:99691286-99698122"	NA	inter
CUST_33408_PI429285431	0.96716005	A	1.1012295	A	0.911257412495356	0	lncRNA	34987-1_{1..2816}	n340131|BC044613|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2590|NULL|-1.1717300|-0.3039114	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340131|BC044613|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2590|NULL|-1.1717300|-0.3039114	chr4	 79567148	 79569963	+	NA	NA	NA	NA	NA	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20"	NA	inter
CUST_5283_PI429285431	0.9398365	A	0.9497756	A	0.99313441740098	0	lncRNA	5223-1_{1..509}	"transcript_id ""ENST00000560803.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560803.1"" | genecode_v17"	chr15	 87585285	 87585793	+	ENSG00000259761.1	ENST00000560803.1	RP11-138H10.2	RP11-138H10.2-001	NA	NA	NA	inter
CUST_40889_PI429285431	2.6737535	A	2.0405667	A	1.55098722135336	0	lncRNA	41579-1_{1..3000}	n410701|NR_037951|lncRNA|Homosapiens||RefGeneNoncode|NR_037951||4.3421400|-0.2670182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410701|NR_037951|lncRNA|Homosapiens||RefGeneNoncode|NR_037951||4.3421400|-0.2670182	chr5	 33987090	 33990089	-	NA	NA	NA	NA	SLC45A2	NA	chr5:33977090-33984780	inter
CUST_6355_PI429285431	1.4634163	A	1.4437348	A	1.01373565532276	0	lncRNA	6279-1_{1..392}	"transcript_id ""ENST00000589345.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589345.1"" | genecode_v17"	chr19	 15962861	 15963252	-	ENSG00000267453.1	ENST00000589345.1	AC004791.2	AC004791.2-001	NA	NA	NA	inter
CUST_22979_PI429285431	4.649639	P	4.978284	P	0.796284014090469	0	lncRNA	24553-1_{1..1228}	lnc-NDUFS8-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFS8-1:11	chr11	 67795217	 67796444	+	lnc-NDUFS8-1	lnc-NDUFS8-1:11	ENSG00000006534.11	ALDH3B1	ALDH3B1	NA	chr11:67785217-67796743	inner
CUST_5742_PI429285431	0.9256936	A	0.92818934	A	0.99827158029634	0	lncRNA	5666-1_{1..1773}	"transcript_id ""ENST00000431343.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431343.1"" | genecode_v17"	chr17	 15170778	 15172550	-	ENSG00000230971.1	ENST00000431343.1	AC005703.3	AC005703.3-001	PMP22	NA	chr17:15160778-15168644	inter
CUST_32921_PI429285431	0.91452074	A	0.9122559	A	1.00157110034741	0	lncRNA	34546-1_{1..517}	n339594|AF085932|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2038|NULL|-1.2602300|-0.3388139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339594|AF085932|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2038|NULL|-1.2602300|-0.3388139	chr20	 20420155	 20420671	+	NA	NA	NA	NA	RALGAPA2	NA	chr20:20410155-20430672	inner
CUST_26484_PI429285431	7.4992003	P	7.909918	P	0.752249057966127	0	lncRNA	27993-1_{1..1408}	lnc-CALCOCO1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-CALCOCO1-2:1	chr12	 54333255	 54334662	-	lnc-CALCOCO1-2	lnc-CALCOCO1-2:1	ENSG00000249641.2	HOXC-AS5	HOXC13	"hg19_refFlat_HOXC13:range=chr12:54332691-543390405'pad=0,hg19_refFlat_HOXC13:range=chr12:54332691-543390405'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90chr12:54332576-54340328"	NA	inter
CUST_47698_PI429285431	0.95501107	A	0.9396847	A	1.01068005914155	0	lncRNA	51668-1_{1..3000}	"gi|385137108|ref|NR_047646.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 76, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137108|ref|NR_047646.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 76, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047646.1	NA	NA	NA	NA	NA	inter
CUST_32825_PI429285431	1.9148189	A	2.5815978	A	0.629911519566864	0	lncRNA	34460-1_{1..2253}	n339473|AK056104|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1911|NULL|-1.1587200|-0.3316429	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339473|AK056104|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1911|NULL|-1.1587200|-0.3316429	chr21	 35269910	 35272162	+	NA	NA	NA	NA	ITSN1	NA	chr21:35259910-35261609	inter
CUST_27401_PI429285431	5.4309297	P	5.679653	P	0.841640888331677	0	lncRNA	28965-1_{1..312}	n324566|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039997|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039997|-1.3462500|-0.6013036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324566|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039997|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039997|-1.3462500|-0.6013036	chr6	 23445917	 23446228	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27263_PI429285431	0.90765446	A	0.8998507	A	1.00542381012998	0	lncRNA	28816-1_{1..786}	n324409|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041918|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041918|-1.2749200|-0.3328775	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324409|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041918|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041918|-1.2749200|-0.3328775	chr6	114909281	114910066	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26789_PI429285431	1.2096881	A	0.9250568	A	1.21809892243308	0	lncRNA	28293-7_{18001..19275}	n323846|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057239|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057239|3.8963400|-0.3476478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323846|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057239|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057239|3.8963400|-0.3476478	chrX	 72975215	 72976489	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_SEPHS1:range=chr10:13361142-133869505'pad=0,hg19_refFlat_SEPHS1:range=chr10:13361142-133869505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_CASP7:range=chr10:115451731-1154892995'pad=0,hg19_refFlat_CASP7:range=chr10:115451731-1154892995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30"	NA	inter
CUST_11412_PI429285431	1.2301272	A	1.5046728	A	0.826710662968023	0	lncRNA	12978-1_{1..857}	lnc-MTOR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTOR-1:1	chr1	 11374662	 11375518	-	lnc-MTOR-1	lnc-MTOR-1:1	XLOC_000701	linc-MTOR-1	NA	NA	NA	inter
CUST_38020_PI429285431	2.8935323	A	3.445184	P	0.682238605761206	0	lncRNA	39106-1_{1..1719}	n377594|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029963||-1.1792700|-0.1704836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377594|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029963||-1.1792700|-0.1704836	chr6	  2462676	  2464394	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22711_PI429285431	1.3992962	A	1.485074	A	0.942276389598055	0	lncRNA	24295-1_{1..469}	lnc-MACC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MACC1-1:1	chr7	 20179940	 20180408	-	lnc-MACC1-1	lnc-MACC1-1:1	ENSG00000243004.1	AC005062.2	MACC1	NA	chr7:20174278-20190076	inner
LNCA_21_P0005644	6.4668775	P	6.4839673	P	0.988224137953515	0	lncRNA	TCONS_00014576	NA	NA	NA	NA	XLOC_006686	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006686), lincRNA [TCONS_00014576]"	chr8:1323203-1323262	hs|8p23.3	Agilent_HUMAN_G3V2	TCONS_00014576	TCONS_00014576	chr8	  1323203	  1323262	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50328_PI429285431	0.96854615	A	1.0105388	A	0.971312444008271	0	lncRNA	54046-1_{1..448}	hg19_lincRNAsTranscripts_TCONS_l2_00029053 range=chr9:132045109-132048007 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029053 range=chr9:132045109-132048007 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132045109	132045556	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010665	0.9238866	A	0.90865535	A	1.01061342501906	0	lncRNA	TCONS_l2_00001689	NA	NA	NA	NA	XLOC_l2_001238	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001238), lincRNA [TCONS_l2_00001689]"	chr1:187454229-187454170	hs|1q31.1	Agilent_HUMAN_G3V2	TCONS_l2_00001689	TCONS_l2_00001689	chr1	187454170	187454229	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27426_PI429285431	2.248353	A	2.5728998	A	0.79854919865553	0	lncRNA	28991-1_{1..661}	n324596|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039804|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039804|-1.0558900|-0.2678359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324596|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039804|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039804|-1.0558900|-0.2678359	chr6	  9069452	  9070112	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4873_PI429285431	3.0829163	P	1.3430095	A	3.34013589356514	0	lncRNA	4816-1_{1..286}	"transcript_id ""ENST00000555377.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555377.1"" | genecode_v17"	chr14	 66961362	 66961647	-	ENSG00000258561.1	ENST00000555377.1	RP11-72M17.1	RP11-72M17.1-003	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.31;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80"	NA	inter
CUST_50092_PI429285431	3.1122577	P	2.7860022	A	1.25375503967536	0	lncRNA	53825-1_{1..1171}	hg19_lincRNAsTranscripts_TCONS_l2_00028009 range=chr8:142524044-142528696 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028009 range=chr8:142524044-142528696 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	142524044	142525214	+	NA	NA	NA	NA	FLJ43860	NA	chr8:142514044-142517330	inter
LNCA_21_P0004427	0.9234569	A	0.9092232	A	1.00991487893961	0	lncRNA	TCONS_00010428	NA	NA	NA	NA	XLOC_004942	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004942), lincRNA [TCONS_00010428]"	chr5:102581880-102580712	hs|5q21.1	Agilent_HUMAN_G3V2	TCONS_00010428	TCONS_00010428	chr5	102580712	102581880	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26929_PI429285431	3.5678277	A	4.089008	P	0.69680153152311	0	lncRNA	28449-1_{1..588}	n324008|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053467|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053467|-1.1402500|-0.5400973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324008|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053467|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053467|-1.1402500|-0.5400973	chr9	105066713	105067300	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49552_PI429285431	0.89987195	A	0.8922529	A	1.00529509273735	0	lncRNA	53343-1_{1..601}	hg19_lincRNAsTranscripts_TCONS_l2_00024298 range=chr6:78190744-78213653 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024298 range=chr6:78190744-78213653 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 78190744	 78191344	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37499_PI429285431	4.667485	P	6.015689	P	0.392780714418537	0	lncRNA	38601-1_{1..435}	n345966|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1515|NULL|-1.4915600|-0.2701429	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345966|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1515|NULL|-1.4915600|-0.2701429	chr15	 29077503	 29077937	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15997_PI429285431	1.1040128	A	1.7586527	A	0.635234027357174	0	lncRNA	17694-1_{1..360}	lnc-SGCE-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SGCE-1:2	chr7	 93996521	 93996880	-	lnc-SGCE-1	lnc-SGCE-1:2	XLOC_006525	linc-BET1-1	NA	NA	NA	inter
CUST_50589_PI429285431	0.92568463	A	1.2782787	A	0.783174626503547	0	lncRNA	54280-1_{1..2185}	hg19_lincRNAsTranscripts_TCONS_l2_00003525 range=chr10:45594217-45642371 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003525 range=chr10:45594217-45642371 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 45594217	 45596401	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31116_PI429285431	0.9258019	A	0.9134881	A	1.00857180507337	0	lncRNA	32910-1_{1..464}	n337406|DQ668395|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393205|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393205|-1.1606300|-0.4990175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337406|DQ668395|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393205|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393205|-1.1606300|-0.4990175	chr5	106918463	106918926	+	NA	NA	NA	NA	EFNA5	NA	chr5:106908463-106928927	inner
CUST_44793_PI429285431	0.9242344	A	0.9076303	A	1.0115755694338	0	lncRNA	49330-1_{1..3000}	"gi|300795874|ref|NR_034108.1| Homo sapiens TRAF3IP2 antisense RNA 1 (TRAF3IP2-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300795874|ref|NR_034108.1| Homo sapiens TRAF3IP2 antisense RNA 1 (TRAF3IP2-AS1), transcript variant 1, non-coding RNA"	Chr6	111804675	111807674	+	643749	NR_034108.1	NA	NA	NA	NA	NA	inter
CUST_50568_PI429285431	1.1299464	A	0.91089714	A	1.16396627668883	0	lncRNA	54260-1_{1..272}	hg19_lincRNAsTranscripts_TCONS_l2_00030938 range=chrY:20990485-20995792 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030938 range=chrY:20990485-20995792 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrY	 20990485	 20990756	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50197_PI429285431	1.30587	A	1.1059775	A	1.14861276485557	0	lncRNA	53922-1_{1..781}	hg19_lincRNAsTranscripts_TCONS_l2_00029723 range=chr9:42411969-42435225 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029723 range=chr9:42411969-42435225 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 42411969	 42412749	+	NA	NA	NA	NA	ANKRD20A2	NA	chr9:42401969-42411410	inter
CUST_9308_PI429285431	2.5085526	A	2.7786806	A	0.829245969493804	0	lncRNA	10814-1_{1..333}	lnc-SMARCA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMARCA2-1:1	chr9	  1928393	  1928725	+	lnc-SMARCA2-1	lnc-SMARCA2-1:1	XLOC_007265	linc-SMARCA2-1	NA	NA	NA	inter
CUST_15043_PI429285431	9.358026	P	9.4374695	P	0.946422645994323	0	lncRNA	16706-1_{1..406}	lnc-PTPRD-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPRD-3:1	chr9	 11194276	 11194681	-	lnc-PTPRD-3	lnc-PTPRD-3:1	XLOC_007645	linc-PTPRD-2	NA	NA	NA	inter
CUST_43495_PI429285431	6.00542	P	6.0561075	P	0.965476132554682	0	lncRNA	48287-1_{1..1984}	"gi|255652949|ref|NR_028293.1| Homo sapiens prostaglandin E receptor 3 (subtype EP3) (PTGER3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|255652949|ref|NR_028293.1| Homo sapiens prostaglandin E receptor 3 (subtype EP3) (PTGER3), transcript variant 3, non-coding RNA"	Chr1	 71318036	 71320019	-	5733	NR_028293.1	NA	NA	NA	NA	NA	inter
CUST_32781_PI429285431	0.92297983	A	1.2755566	A	0.783184017956273	0	lncRNA	34415-1_{1..1035}	n339420|AF143877|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1852|NULL|-0.8954120|-0.2805924	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339420|AF143877|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1852|NULL|-0.8954120|-0.2805924	chr3	111466664	111467698	+	NA	NA	NA	NA	PHLDB2	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30chr3:111456664-111479996"	NA	inner
CUST_392_PI429285431	3.7783508	P	3.5993624	P	1.13208979949779	0	lncRNA	384-1_{1..600}	"transcript_id ""ENST00000412092.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000412092.2"" | genecode_v17"	chr1	142618795	142619394	+	ENSG00000230880.2	ENST00000412092.2	RP11-417J8.3	RP11-417J8.3-005	NA	NA	NA	inter
CUST_40809_PI429285431	1.7016802	A	1.962866	A	0.834401814340758	0	lncRNA	41515-1_{1..3000}	n410578|NR_037846|lncRNA|Homosapiens||RefGeneNoncode|NR_037846||0.2812970|-0.2672888	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410578|NR_037846|lncRNA|Homosapiens||RefGeneNoncode|NR_037846||0.2812970|-0.2672888	chr6	  2993298	  2996297	+	NA	NA	NA	NA	NQO2	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10chr6:3000067-3019994"	NA	inner
CUST_39934_PI429285431	11.696142	P	12.147859	P	0.731172137336806	0	lncRNA	40812-1_{1..2936}	n406850|NR_024332|lncRNA|Homosapiens||RefGeneNoncode|NR_024332||9.0484800|-0.0730503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406850|NR_024332|lncRNA|Homosapiens||RefGeneNoncode|NR_024332||9.0484800|-0.0730503	chr1	 46654352	 46657287	-	NA	NA	NA	NA	POMGNT1	"hg19_refFlat_LURAP1:range=chr1:46669099-466858925'pad=0,hg19_refFlat_LURAP1:range=chr1:46669099-466858925'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.00chr1:46654353-46685977"	NA	inner
CUST_12945_PI429285431	0.93075395	A	0.91350406	A	1.01202847985497	0	lncRNA	14573-1_{1..374}	lnc-MRAP2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRAP2-2:4	chr6	 84716534	 84716907	+	lnc-MRAP2-2	lnc-MRAP2-2:4	XLOC_005371	linc-MRAP2-2	NA	NA	NA	inter
CUST_17163_PI429285431	1.3924164	A	0.9211008	A	1.38637313165459	0	lncRNA	18873-1_{1..2270}	lnc-SLC4A1AP-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC4A1AP-1:7	chr2	 27977428	 27979697	+	lnc-SLC4A1AP-1	lnc-SLC4A1AP-1:7	XLOC_001406	linc-MRPL33	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20"	NA	inter
LNCA_21_P0004487	3.7972147	P	3.6984367	P	1.07086602706811	0	lncRNA	TCONS_00010620	NA	NA	NA	NA	XLOC_004285	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004285), lincRNA [TCONS_00010620]"	chr5:8560320-8560379	hs|5p15.31	Agilent_HUMAN_G3V2	TCONS_00010620	TCONS_00010620	chr5	  8560320	  8560379	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5393_PI429285431	9.748623	P	10.1430855	P	0.760772762355905	0	lncRNA	5327-1_{1..275}	"transcript_id ""ENST00000531523.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531523.1"" | genecode_v17"	chr16	  2014960	  2015234	+	ENSG00000255198.2	ENST00000531523.1	SNHG9	SNHG9-001	RNF151	NA	chr16:2016875-2018976	inter
CUST_33219_PI429285431	0.9685268	A	1.2300867	A	0.834185476693374	0	lncRNA	34808-1_{1..922}	n339915|CR605864|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2364|NULL|-1.0883400|-0.3610105	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339915|CR605864|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2364|NULL|-1.0883400|-0.3610105	chr4	 38392374	 38393295	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF182:range=chrX:47835566-478479955'pad=0,hg19_refFlat_ZNF182:range=chrX:47835566-478479955'pad=0 3'pad=0 strand=- repeatMasking=none,-59.90"	NA	inter
CUST_31622_PI429285431	2.2969728	A	2.0949466	A	1.15031278336576	0	lncRNA	33378-1_{1..1446}	n338142|AF070632|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|530|NULL|-1.1914300|-0.2761257	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338142|AF070632|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|530|NULL|-1.1914300|-0.2761257	chr1	112313291	112314736	-	NA	NA	NA	NA	KCND3	NA	chr1:112318454-112325191	inter
CUST_40481_PI429285431	5.682579	P	6.1167173	P	0.740135694522414	0	lncRNA	41247-1_{1..3000}	n409416|NR_033818|lncRNA|Homosapiens||RefGeneNoncode|NR_033818||6.7567400|-0.2361289	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409416|NR_033818|lncRNA|Homosapiens||RefGeneNoncode|NR_033818||6.7567400|-0.2361289	chr8	 42128819	 42131818	+	NA	NA	NA	NA	POLB	NA	chr8:42196030-42200171	inter
CUST_40590_PI429285431	0.925792	A	0.9249481	A	1.00058511802048	0	lncRNA	41338-2_{3001..3349}	n410053|NR_036491|lncRNA|Homosapiens||RefGeneNoncode|NR_036491||8.9975200|-0.2501217	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410053|NR_036491|lncRNA|Homosapiens||RefGeneNoncode|NR_036491||8.9975200|-0.2501217	chr8	101148587	101148935	-	NA	NA	NA	NA	FBXO43	NA	chr8:101145588-101158099	inner
CUST_1204_PI429285431	0.91198814	A	0.91396093	A	0.998633500685288	0	lncRNA	1195-1_{1..357}	"transcript_id ""ENST00000443261.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443261.1"" | genecode_v17"	chr2	199239200	199239556	-	ENSG00000236653.1	ENST00000443261.1	AC005235.1	AC005235.1-003	NA	NA	NA	inter
CUST_45547_PI429285431	0.9161679	A	0.91262484	A	1.00245888014893	0	lncRNA	49948-1_{1..3000}	"gi|410170598|ref|XR_109026.4| PREDICTED: Homo sapiens supervillin pseudogene (LOC645954), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170598|ref|XR_109026.4| PREDICTED: Homo sapiens supervillin pseudogene (LOC645954), misc_RNA"	NA	NA	NA	NA	NA	XR_109026.4	NA	NA	NA	NA	NA	Unknown
CUST_51201_PI429285431	5.534919	P	5.6540504	P	0.920741832643786	0	lncRNA	54820-1_{1..219}	hg19_lincRNAsTranscripts_TCONS_l2_00008465 range=chr15:28567837-28577552 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008465 range=chr15:28567837-28577552 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28567837	 28568055	+	NA	NA	NA	NA	HERC2	NA	chr15:28557837-28567295	inter
CUST_20994_PI429285431	5.2999973	P	5.7986307	P	0.707776908916772	0	lncRNA	22623-1_{1..668}	lnc-SLA2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLA2-3:1	chr20	 35201315	 35201982	-	lnc-SLA2-3	lnc-SLA2-3:1	ENSG00000232907.2	RP5-977B1.7	TGIF2	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00chr20:35201876-35211794"	NA	inter
CUST_17361_PI429285431	6.8401227	P	7.310328	P	0.721861867258832	0	lncRNA	19081-1_{1..306}	lnc-RETNLB-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RETNLB-1:2	chr3	108463130	108463435	-	lnc-RETNLB-1	lnc-RETNLB-1:2	XLOC_003211	linc-KIAA1524-2	NA	NA	NA	inter
CUST_45716_PI429285431	0.9284561	A	1.4665241	A	0.688692561585653	0	lncRNA	50083-1_{1..2091}	"gi|253970422|ref|NR_028043.1| Homo sapiens IGF2 antisense RNA (IGF2-AS), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|253970422|ref|NR_028043.1| Homo sapiens IGF2 antisense RNA (IGF2-AS), transcript variant 2, non-coding RNA"	Chr11	  2161758	  2163848	+	51214	NR_028043.1	NA	NA	NA	"hg19_refFlat_INS-IGF2:range=chr11:2168842-21822015'pad=0,hg19_refFlat_INS-IGF2:range=chr11:2168842-21822015'pad=0 3'pad=0 strand=- repeatMasking=none,-104.40"	NA	inter
CUST_30642_PI429285431	4.9460616	P	5.118075	P	0.88760309302082	0	lncRNA	32424-1_{1..449}	n336009|X78075|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323653|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323653|-1.1427500|-0.2312794	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336009|X78075|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323653|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323653|-1.1427500|-0.2312794	chr5	 83016571	 83017019	-	NA	NA	NA	NA	HAPLN1	NA	chr5:83006571-83016896	inner
CUST_18796_PI429285431	8.118964	P	7.999041	P	1.08667686249901	0	lncRNA	20491-1_{1..768}	lnc-COX10-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COX10-2:2	chr17	 13928653	 13929420	+	lnc-COX10-2	lnc-COX10-2:2	ENSG00000141028	AC005304.2	NA	NA	NA	inter
CUST_20340_PI429285431	16.494108	P	16.17763	P	1.24528676086801	0	lncRNA	21982-1_{1..3000}	lnc-RPS25-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS25-1:9	chr11	118898338	118901337	-	lnc-RPS25-1	lnc-RPS25-1:9	ENSG00000137700.10	SLC37A4	SLC37A4	NA	chr11:118895061-118901616	inner
CUST_35949_PI429285431	4.8758445	P	5.007423	P	0.91283214403018	0	lncRNA	37308-3_{6001..9000}	n344583|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_131|NULL|-1.2937000|-0.1534478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344583|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_131|NULL|-1.2937000|-0.1534478	chrX	114963339	114966338	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45827_PI429285431	4.1143622	P	4.3785205	P	0.8326843994066	0	lncRNA	50161-1_{1..1369}	"gi|410170624|ref|XR_159124.2| PREDICTED: Homo sapiens uncharacterized LOC100996453 (LOC100996453), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|410170624|ref|XR_159124.2| PREDICTED: Homo sapiens uncharacterized LOC100996453 (LOC100996453), misc_RNA"	NA	NA	NA	NA	NA	XR_159124.2	NA	NA	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30"	NA	Unknown
CUST_5325_PI429285431	3.348109	A	4.318213	P	0.510469263172842	0	lncRNA	5264-1_{1..442}	"transcript_id ""ENST00000553477.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553477.1"" | genecode_v17"	chr15	 94380840	 94381281	-	ENSG00000259123.1	ENST00000553477.1	RP11-76E17.2	RP11-76E17.2-001	NA	NA	NA	inter
CUST_24997_PI429285431	0.927336	A	1.1002386	A	0.887056190543074	0	lncRNA	26538-1_{1..693}	lnc-NAV3-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NAV3-2:4	chr12	 78876565	 78877257	+	lnc-NAV3-2	lnc-NAV3-2:4	ENSG00000258084.1	RP11-754N21.1	NA	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_51299_PI429285431	5.1115427	P	3.4752223	P	3.10871939642575	0	lncRNA	54903-1_{1..2357}	hg19_lincRNAsTranscripts_TCONS_l2_00008991 range=chr15:32809623-32828493 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008991 range=chr15:32809623-32828493 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 32809623	 32811979	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90"	NA	inter
CUST_10393_PI429285431	6.931339	P	6.9592104	P	0.980866433277457	0	lncRNA	11921-1_{1..3000}	lnc-RP11-150O12.1.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-150O12.1.1-1:4	chr8	 37186226	 37189225	-	lnc-RP11-150O12.1.1-1	lnc-RP11-150O12.1.1-1:4	XLOC_007052	linc-DUSP26-4	NA	NA	NA	inter
CUST_39850_PI429285431	1.6079984	A	2.2015777	A	0.662696727366326	0	lncRNA	40750-1_{1..3000}	n406474|NR_023386|lncRNA|Homosapiens||RefGeneNoncode|NR_023386||7.4662300|-0.2425851	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406474|NR_023386|lncRNA|Homosapiens||RefGeneNoncode|NR_023386||7.4662300|-0.2425851	chr1	 16793930	 16796929	-	NA	NA	NA	NA	NECAP2	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30chr1:16783930-16786585"	NA	inter
LNCA_21_P0003682	1.0232601	A	1.4432423	A	0.747433846114183	0	lncRNA	ENST00000507969	NA	BC034301	NA	Hs.721287	ADAM29	ADAM metallopeptidase domain 29	ENST00000507969	THC2605725	GO:0016020|GO:0005887|GO:0006508|GO:0008270|GO:0007283|GO:0004222|GO:0008237	"BROAD Institute lincRNA (XLOC_003789), lincRNA [TCONS_00008339]"	chr4:175756030-175777682	hs|4q34.1	Agilent_HUMAN_G3V2	ENST00000507969	ENST00000507969	chr4	175756030	175777682	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3283001	3.5310357	P	3.4884226	P	1.02997769855616	0	lncRNA	XR_133401	XR_133401	XR_133401	   728093	NA	LOC728093	putative POM121-like protein 1-like	NA	NA	NA	"PREDICTED: Homo sapiens putative POM121-like protein 1-like (LOC728093), miscRNA [XR_133401]"	chr5:98858752-98858693	hs|5q21.1	Agilent_HUMAN_G3V2	XR_133401	XR_133401	chr5	 98858693	 98858752	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18332_PI429285431	3.1391249	P	3.1676068	P	0.980451451414762	0	lncRNA	20061-1_{1..483}	lnc-FOXL2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FOXL2-1:3	chr3	138661226	138661708	-	lnc-FOXL2-1	lnc-FOXL2-1:3	ENSG00000244578	RP11-548O1.3	FOXL2	NA	chr3:138663066-138665982	inter
CUST_17584_PI429285431	1.2679244	A	1.6905922	A	0.746043780216203	0	lncRNA	19310-1_{1..957}	lnc-ERG-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-ERG-2:4	chr21	 40140771	 40141727	-	lnc-ERG-2	lnc-ERG-2:4	XLOC_014073	linc-ERG-3	NA	NA	NA	inter
CUST_35346_PI429285431	0.9057689	A	0.9035492	A	1.00153976301631	0	lncRNA	36757-1_{1..2699}	n342390|AK095414|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4882|NULL|-1.0715000|-0.3002139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342390|AK095414|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4882|NULL|-1.0715000|-0.3002139	chr2	 18128279	 18130977	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14498_PI429285431	7.2832413	P	7.6645865	P	0.767721416785875	0	lncRNA	16165-1_{1..3000}	lnc-ARRDC3-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARRDC3-1:7	chr5	 90609897	 90612896	-	lnc-ARRDC3-1	lnc-ARRDC3-1:7	XLOC_004924	linc-LYSMD3-2	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_41693_PI429285431	0.9708835	A	0.92415464	A	1.0329202424864	0	lncRNA	43169-1_{1..143}	ENST00000390233 ncrna:miRNA chromosome:GRCh37:20:10342736:10342878:-1 gene:ENSG00000211588 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390233 ncrna:miRNA chromosome:GRCh37:20:10342736:10342878:-1 gene:ENSG00000211588 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 10342736	 10342878	-	ENSG00000211588	ENST00000390233	NA	NA	NA	NA	NA	inter
CUST_10109_PI429285431	3.8033721	P	4.1445355	P	0.7894044734897	0	lncRNA	11633-1_{1..226}	lnc-MYOM2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYOM2-1:2	chr8	  1983609	  1983834	+	lnc-MYOM2-1	lnc-MYOM2-1:2	XLOC_006689	linc-MYOM2	MYOM2	NA	chr8:1993158-1993812	inter
CUST_36883_PI429285431	0.9953379	A	0.98875767	A	1.00457148537429	0	lncRNA	38042-1_{1..570}	n345355|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_904|NULL|-1.3538600|-0.3861688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345355|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_904|NULL|-1.3538600|-0.3861688	chr18	 22273096	 22273665	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24831_PI429285431	0.95460665	A	0.9665029	A	0.991788051639541	0	lncRNA	26371-1_{1..561}	lnc-GNG5P2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-GNG5P2-1:1	chrX	109549975	109550535	-	lnc-GNG5P2-1	lnc-GNG5P2-1:1	ENSG00000224142.1	AMMECR1-IT1	AMMECR1	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80chrX:109539975-109560449"	NA	inner
CUST_2510_PI429285431	2.5385609	A	2.5842378	A	0.968835141233363	0	lncRNA	2502-1_{1..592}	"transcript_id ""ENST00000533304.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533304.1"" | genecode_v17"	chr6	 33860087	 33860678	-	ENSG00000249346.2	ENST00000533304.1	RP3-468B3.3	RP3-468B3.3-005	NA	NA	NA	inter
LNCA_32_P705474	1.0406451	A	0.9942537	A	1.03267866093832	0	lncRNA	XR_132725	XR_132725	XR_132725	100507530	Hs.490892	LOC100507530	uncharacterized LOC100507530	NA	THC2476739	NA	"PREDICTED: Homo sapiens hypothetical LOC100507530 (LOC100507530), miscRNA [XR_132725]"	chr8:6474255-6474196	hs|8p23.1	Agilent_HUMAN_G3V2	XR_132725	XR_132725	chr8	  6474196	  6474255	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46630_PI429285431	2.870265	A	2.8309982	A	1.02759145601013	0	lncRNA	50806-1_{1..498}	"gi|310123550|ref|XR_109287.1| PREDICTED: Homo sapiens uncharacterized LOC100128371 (LOC100128371), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123550|ref|XR_109287.1| PREDICTED: Homo sapiens uncharacterized LOC100128371 (LOC100128371), misc_RNA"	NA	NA	NA	NA	NA	XR_109287.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009948	1.2990509	A	1.2632766	A	1.0251068542252	0	lncRNA	TCONS_00028129	NA	NA	NA	NA	XLOC_013487	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013487), lincRNA [TCONS_00028129]"	chr20:22754501-22754560	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028129	TCONS_00028129	chr20	 22754501	 22754560	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50761_PI429285431	7.8626037	P	8.099697	P	0.848453029937996	0	lncRNA	54425-1_{1..1061}	hg19_lincRNAsTranscripts_TCONS_l2_00004347 range=chr11:3407831-3428864 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004347 range=chr11:3407831-3428864 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	  3407831	  3408891	+	NA	NA	NA	NA	ZNF195	NA	chr11:3397831-3400452	inter
CUST_24763_PI429285431	0.9387535	A	0.92745894	A	1.00785951754291	0	lncRNA	26307-1_{1..1064}	lnc-SNURF-3:19	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SNURF-3:19	chr15	 25583158	 25584221	+	lnc-SNURF-3	lnc-SNURF-3:19	ENSG00000224078.4	SNHG14	SNRPN	NA	chr15:25573158-25593343	inner
CUST_43984_PI429285431	3.1419563	A	0.9682858	A	4.51169799643472	0	lncRNA	48684-1_{1..3000}	"gi|284413747|ref|NR_033258.1| Homo sapiens zinc finger E-box binding homeobox 2 (ZEB2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|284413747|ref|NR_033258.1| Homo sapiens zinc finger E-box binding homeobox 2 (ZEB2), transcript variant 3, non-coding RNA"	Chr2	145268952	145271951	-	9839	NR_033258.1	NA	NA	NA	NA	NA	inter
CUST_39071_PI429285431	0.91423905	A	0.90995556	A	1.00297350112682	0	lncRNA	40046-1_{1..1944}	n385550|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004adv.2||1.1609200|-0.2240659	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n385550|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004adv.2||1.1609200|-0.2240659	chr9	 65487272	 65489215	-	NA	NA	NA	NA	FAM75A7	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60chr9:65503366-65504386"	NA	inter
CUST_40247_PI429285431	0.9202146	A	0.92432487	A	0.997155032550041	0	lncRNA	41063-1_{1..3000}	n408158|NR_028137|lncRNA|Homosapiens||RefGeneNoncode|NR_028137||-1.0220200|-0.3291951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n408158|NR_028137|lncRNA|Homosapiens||RefGeneNoncode|NR_028137||-1.0220200|-0.3291951	chr7	107296960	107299959	-	NA	NA	NA	NA	SLC26A4	"hg19_refFlat_SLC26A4:range=chr7:107302087-1073558915'pad=0,hg19_refFlat_SLC26A4:range=chr7:107302087-1073558915'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.50chr7:107301080-107312243"	NA	inner
CUST_28442_PI429285431	1.3092161	A	1.1155984	A	1.14362788290378	0	lncRNA	30101-1_{1..399}	n325767|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044383|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044383|-1.2564400|-0.4340053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325767|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044383|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044383|-1.2564400|-0.4340053	chr13	 30467298	 30467696	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006683	0.94684815	A	0.92565197	A	1.014800531413	0	lncRNA	ENST00000416265	NA	NA	NA	NA	XLOC_008506	NA	ENST00000416265	NA	NA	"BROAD Institute lincRNA (XLOC_008506), lincRNA [TCONS_00017838]"	chr10:71477928-71477987	hs|10q22.1	Agilent_HUMAN_G3V2	ENST00000416265	ENST00000416265	chr10	 71477928	 71477987	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47200_PI429285431	5.9806843	P	5.1378307	P	1.7935943019733	0	lncRNA	51275-1_{1..2705}	"gi|388240798|ref|NR_049753.1| Homo sapiens zinc finger protein 211 (ZNF211), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388240798|ref|NR_049753.1| Homo sapiens zinc finger protein 211 (ZNF211), transcript variant 8, non-coding RNA"	Chr19	 58144535	 58147239	+	10520	NR_049753.1	NA	NA	NA	NA	NA	inter
CUST_1192_PI429285431	0.9138608	A	1.1612401	A	0.84242531773398	0	lncRNA	1183-1_{1..585}	"transcript_id ""ENST00000433550.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433550.1"" | genecode_v17"	chr2	193508828	193509412	-	ENSG00000232227.1	ENST00000433550.1	AC013401.2	AC013401.2-002	NA	NA	NA	inter
CUST_51297_PI429285431	5.322508	P	3.1814597	P	4.41082431983007	0	lncRNA	54901-1_{1..2145}	hg19_lincRNAsTranscripts_TCONS_l2_00008989 range=chr15:32809617-32828779 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008989 range=chr15:32809617-32828779 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 32809617	 32811761	-	NA	NA	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70"	NA	inter
LNCA_21_P0009558	1.4257361	A	0.9267603	A	1.41320993827179	0	lncRNA	TCONS_00026523	NA	NA	NA	NA	XLOC_012847	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012847), lincRNA [TCONS_00026523]"	chr18:52558293-52558234	hs|18q21.2	Agilent_HUMAN_G3V2	TCONS_00026523	TCONS_00026523	chr18	 52558234	 52558293	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21391_PI429285431	2.0746233	A	3.09509	A	0.4929568589544	0	lncRNA	23013-1_{1..496}	lnc-SLC4A3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SLC4A3-1:1	chr2	220578979	220579474	+	lnc-SLC4A3-1	lnc-SLC4A3-1:1	ENSG00000227308.1	AC009502.4	NA	"hg19_refFlat_PAMR1:range=chr11:35453904-355471335'pad=0,hg19_refFlat_PAMR1:range=chr11:35453904-355471335'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0,hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70"	NA	inter
CUST_6307_PI429285431	0.92835844	A	0.92296827	A	1.00374316936337	0	lncRNA	6231-1_{1..879}	"transcript_id ""ENST00000586721.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586721.1"" | genecode_v17"	chr19	  4769152	  4770030	+	ENSG00000176840.7	ENST00000586721.1	MIR7-3HG	MIR7-3HG-002	NA	NA	NA	inter
CUST_17762_PI429285431	2.8700974	A	1.0021604	A	3.65010255702088	0	lncRNA	19494-1_{1..294}	lnc-SLC6A9-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC6A9-2:3	chr1	 44411916	 44412209	-	lnc-SLC6A9-2	lnc-SLC6A9-2:3	XLOC_000812	linc-HYI-2	IPO13	NA	chr1:44412478-44421958	inter
CUST_18733_PI429285431	1.0536036	A	1.6597722	A	0.656939036161187	0	lncRNA	20431-1_{1..3000}	lnc-CASP9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CASP9-1:1	chr1	 15735783	 15738782	-	lnc-CASP9-1	lnc-CASP9-1:1	ENSG00000228140	RP3-467K16.4	EFHD2	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50chr1:15736391-15745929"	NA	inter
CUST_33132_PI429285431	4.05422	P	4.0809093	P	0.981670454452911	0	lncRNA	34728-1_{1..2000}	n339821|BC042986|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2268|NULL|-1.2562800|-0.3250187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339821|BC042986|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2268|NULL|-1.2562800|-0.3250187	chr18	 29122108	 29124107	-	NA	NA	NA	NA	DSG2	"hg19_refFlat_DSG2:range=chr18:29078215-291267065'pad=0,hg19_refFlat_DSG2:range=chr18:29078215-291267065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00chr18:29112108-29128814"	NA	inner
CUST_3433_PI429285431	0.9214414	A	0.90892375	A	1.00871432437411	0	lncRNA	3404-1_{1..2078}	"transcript_id ""ENST00000436054.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436054.1"" | genecode_v17"	chr9	 74920352	 74922429	+	ENSG00000225434.2	ENST00000436054.1	RP11-63P12.6	RP11-63P12.6-001	ZFAND5	NA	chr9:74966341-74968126	inter
CUST_12517_PI429285431	0.92435825	A	1.500795	A	0.670618064139413	0	lncRNA	14128-1_{1..420}	lnc-RP11-327F22.5.1-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-327F22.5.1-7:3	chr16	 51806287	 51806706	+	lnc-RP11-327F22.5.1-7	lnc-RP11-327F22.5.1-7:3	XLOC_011722	linc-CHD9-6	NA	NA	NA	inter
LNCA_21_P0005243	0.9826309	A	0.9259511	A	1.04006940194346	0	lncRNA	ENST00000446000	NA	NA	NA	NA	XLOC_006159	NA	ENST00000446000	THC2720155	NA	"BROAD Institute lincRNA (XLOC_006159), lincRNA [TCONS_00013033]"	chr7:84213512-84213571	hs|7q21.11	Agilent_HUMAN_G3V2	ENST00000446000	ENST00000446000	chr7	 84213512	 84213571	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49549_PI429285431	1.5839411	A	0.98414296	A	1.51550450427028	0	lncRNA	53340-1_{1..883}	hg19_lincRNAsTranscripts_TCONS_l2_00024810 range=chr6:69342721-69344840 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024810 range=chr6:69342721-69344840 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 69342721	 69343603	-	NA	NA	NA	NA	BAI3	NA	chr6:69345632-69354840	inter
CUST_14057_PI429285431	1.2273055	A	1.0963638	A	1.09500822009102	0	lncRNA	15703-1_{1..624}	lnc-DFFB-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DFFB-4:1	chr1	  4193888	  4194511	+	lnc-DFFB-4	lnc-DFFB-4:1	XLOC_000032	linc-AJAP1-4	NA	NA	NA	inter
CUST_36626_PI429285431	1.3540297	A	2.1364589	A	0.581387033116208	0	lncRNA	37820-1_{1..3000}	n345123|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_672|NULL|-1.2755700|-0.3151349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345123|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_672|NULL|-1.2755700|-0.3151349	chr10	 79524923	 79527922	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48954_PI429285431	1.3374981	A	1.8890574	A	0.682282302359688	0	lncRNA	52794-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00019025 range=chr3:181670177-181728449 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019025 range=chr3:181670177-181728449 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	181676177	181679176	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20"	NA	inter
CUST_51639_PI429285431	6.1344476	P	6.8109236	P	0.62569175574436	0	lncRNA	55209-1_{1..1374}	hg19_lincRNAsTranscripts_TCONS_l2_00011289 range=chr17:43663236-43675927 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011289 range=chr17:43663236-43675927 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 43663236	 43664609	-	NA	NA	NA	NA	NA	"hg19_refFlat_DND1:range=chr5:140050878-1400531275'pad=0,hg19_refFlat_DND1:range=chr5:140050878-1400531275'pad=0 3'pad=0 strand=- repeatMasking=none,-108.90"	NA	inter
CUST_8098_PI429285431	10.036385	P	10.498508	P	0.725917247711899	0	lncRNA	9703-1_{1..1916}	lnc-CPM-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-CPM-2:1	chr12	 69080714	 69082629	-	lnc-CPM-2	lnc-CPM-2:1	ENSG00000247363	ENST00000502102	NUP107	NA	chr12:69079560-69091535	inner
CUST_576_PI429285431	2.656785	A	2.5875676	A	1.04914741189401	0	lncRNA	568-1_{1..645}	"transcript_id ""ENST00000434398.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434398.1"" | genecode_v17"	chr1	221505981	221506625	-	ENSG00000234754.1	ENST00000434398.1	RP11-421L10.1	RP11-421L10.1-002	NA	NA	NA	inter
CUST_18378_PI429285431	0.9088968	A	0.9260243	A	0.988198314364906	0	lncRNA	20106-1_{1..3000}	lnc-WDR3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR3-1:1	chr1	118406778	118409777	+	lnc-WDR3-1	lnc-WDR3-1:1	ENSG00000246170	AL122007.1	GDAP2	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.72;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30chr1:118406107-118421617"	NA	inner
CUST_27966_PI429285431	1.0093842	A	0.9302621	A	1.05637502604226	0	lncRNA	29570-1_{1..493}	n325215|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329241|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329241|-1.0677300|-0.3373593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325215|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329241|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329241|-1.0677300|-0.3373593	chr2	104395116	104395608	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36941_PI429285431	8.996728	P	10.12346	P	0.457951906031466	0	lncRNA	38095-1_{1..727}	n345411|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_960|NULL|-1.3379100|-0.2275691	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345411|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_960|NULL|-1.3379100|-0.2275691	chr22	 28318057	 28318783	-	NA	NA	NA	NA	PITPNB	"hg19_refFlat_SETMAR:range=chr3:4345055-43589305'pad=0,hg19_refFlat_SETMAR:range=chr3:4345055-43589305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60chr22:28308057-28315255"	NA	inter
CUST_22822_PI429285431	5.5688343	P	5.856865	P	0.819019269256844	0	lncRNA	24402-1_{1..472}	lnc-ZNF131-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF131-2:1	chr5	 43024301	 43024772	+	lnc-ZNF131-2	lnc-ZNF131-2:1	ENSG00000251131.1	CTD-2035E11.3	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80"	NA	inter
CUST_44203_PI429285431	5.70802	P	6.2053585	P	0.708412463709548	0	lncRNA	48857-1_{1..319}	"gi|256574771|ref|NR_028358.1| Homo sapiens transmembrane protein 30C (TMEM30C), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|256574771|ref|NR_028358.1| Homo sapiens transmembrane protein 30C (TMEM30C), transcript variant 2, non-coding RNA"	Chr3	 99904668	 99904986	+	644444	NR_028358.1	NA	NA	NA	NA	NA	inter
CUST_6023_PI429285431	4.693985	P	5.1467648	P	0.730633698121437	0	lncRNA	5949-1_{1..472}	"transcript_id ""ENST00000572850.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000572850.1"" | genecode_v17"	chr17	 81159765	 81160236	+	ENSG00000262952.1	ENST00000572850.1	AC139099.6	AC139099.6-002	NA	NA	NA	inter
CUST_7446_PI429285431	0.94998926	A	0.9433236	A	1.0046309734023	0	lncRNA	9090-1_{1..3000}	lnc-ZNF708-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF708-2:1	chr19	 21646546	 21649545	-	lnc-ZNF708-2	lnc-ZNF708-2:1	ENSG00000249756	AC010615.2	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20"	NA	inter
CUST_14667_PI429285431	6.512449	P	6.751871	P	0.847084619582633	0	lncRNA	16336-1_{1..868}	lnc-PIEZO2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIEZO2-4:1	chr18	 10409720	 10410587	-	lnc-PIEZO2-4	lnc-PIEZO2-4:1	XLOC_012763	linc-PPP4R1-8	NA	NA	NA	inter
CUST_20725_PI429285431	0.9266302	A	0.91160387	A	1.01046988796512	0	lncRNA	22360-1_{1..832}	lnc-SMARCA5-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMARCA5-3:1	chr4	145047076	145047907	+	lnc-SMARCA5-3	lnc-SMARCA5-3:1	ENSG00000248828.1	RP11-673E1.4	GYPA	NA	chr4:145037076-145057512	inner
CUST_17552_PI429285431	7.188018	P	7.041882	P	1.10660166531965	0	lncRNA	19279-1_{1..459}	lnc-MRAP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRAP2-2:1	chr6	 84697811	 84698269	+	lnc-MRAP2-2	lnc-MRAP2-2:1	XLOC_005371	linc-MRAP2-2	NA	NA	NA	inter
CUST_14396_PI429285431	0.91135466	A	0.90401614	A	1.00509963353953	0	lncRNA	16058-1_{1..375}	lnc-APBA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APBA2-2:1	chr15	 28944419	 28944793	+	lnc-APBA2-2	lnc-APBA2-2:1	XLOC_011193	linc-APBA2-3	LOC653720	NA	chr15:28947100-28954750	inter
CUST_47632_PI429285431	4.612315	P	5.093623	P	0.716327880500678	0	lncRNA	51622-1_{1..1377}	"gi|222144263|ref|NR_026694.1| Homo sapiens zinc finger, CCHC domain containing 18 (ZCCHC18), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|222144263|ref|NR_026694.1| Homo sapiens zinc finger, CCHC domain containing 18 (ZCCHC18), transcript variant 2, non-coding RNA"	NW_004070885.1	   248832	   250208	+	644353	NR_026694.1	NA	NA	NA	NA	NA	Unknown
CUST_35236_PI429285431	4.489212	P	4.38054	P	1.07823526458523	0	lncRNA	36637-1_{1..2977}	n342230|BX649033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4720|NULL|-1.0333500|-0.3499965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342230|BX649033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4720|NULL|-1.0333500|-0.3499965	chrX	 73425036	 73428012	-	NA	NA	NA	NA	NA	"hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40"	NA	inter
CUST_47164_PI429285431	9.559092	P	9.373768	P	1.13707230790589	0	lncRNA	51242-1_{1..1714}	"gi|84872113|ref|NR_002825.1| Homo sapiens sialic acid binding Ig-like lectin 16 (gene/pseudogene) (SIGLEC16), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|84872113|ref|NR_002825.1| Homo sapiens sialic acid binding Ig-like lectin 16 (gene/pseudogene) (SIGLEC16), non-coding RNA"	NA	NA	NA	NA	NA	NR_002825.1	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30"	NA	Unknown
LNCA_21_P0012687	0.930818	A	0.9131954	A	1.01228996398766	0	lncRNA	TCONS_l2_00021337	NA	NA	NA	NA	XLOC_l2_011302	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011302), lincRNA [TCONS_l2_00021337]"	chr4:147030607-147029277	hs|4q31.22	Agilent_HUMAN_G3V2	TCONS_l2_00021337	TCONS_l2_00021337	chr4	147029277	147030607	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39191_PI429285431	2.2972248	A	2.2868674	A	1.00720503486431	0	lncRNA	40166-1_{1..1241}	n385945|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009wfu.1||5.1788300|-0.0997868	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385945|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009wfu.1||5.1788300|-0.0997868	chr1	111023387	111024627	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22238_PI429285431	2.4836755	A	2.2789116	A	1.15249772275075	0	lncRNA	23839-1_{1..526}	lnc-AL358813.2-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL358813.2-2:7	chr1	149580746	149581271	+	lnc-AL358813.2-2	lnc-AL358813.2-2:7	ENSG00000232151.3	RP11-277L2.2	LOC642441	NA	chr1:149576642-149577448	inter
CUST_48128_PI429285431	0.90670884	A	0.8984018	A	1.00577461050781	0	lncRNA	51996-1_{1..2438}	"gi|410169839|ref|XR_111130.3| PREDICTED: Homo sapiens uncharacterized LOC387720 (LOC387720), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410169839|ref|XR_111130.3| PREDICTED: Homo sapiens uncharacterized LOC387720 (LOC387720), misc_RNA"	NA	NA	NA	NA	NA	XR_111130.3	NA	NA	NA	NA	NA	Unknown
CUST_3757_PI429285431	2.5052104	A	2.4081109	A	1.06962085510708	0	lncRNA	3726-1_{1..1487}	"transcript_id ""ENST00000441457.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441457.1"" | genecode_v17"	chr10	 87209349	 87210835	+	ENSG00000230962.1	ENST00000441457.1	RP11-113E21.1	RP11-113E21.1-001	NA	NA	NA	inter
CUST_40068_PI429285431	2.8505015	A	1.2534323	A	3.02528110107036	0	lncRNA	40920-1_{1..3000}	n407319|NR_026786|lncRNA|Homosapiens||RefGeneNoncode|NR_026786||3.9947600|-0.2471336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407319|NR_026786|lncRNA|Homosapiens||RefGeneNoncode|NR_026786||3.9947600|-0.2471336	chr3	197687070	197690069	+	NA	NA	NA	NA	IQCG	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20chr3:197677070-197686886"	NA	inner
CUST_10456_PI429285431	0.91333854	A	1.0938702	A	0.882377763722561	0	lncRNA	11982-1_{1..423}	lnc-MBNL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBNL1-1:1	chr3	151831059	151831481	+	lnc-MBNL1-1	lnc-MBNL1-1:1	XLOC_002876	linc-MBNL1	NA	NA	NA	inter
CUST_15364_PI429285431	4.0044036	P	3.892796	P	1.08043149447853	0	lncRNA	17047-1_{1..402}	lnc-XKR4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-XKR4-2:1	chr8	 55975373	 55975774	+	lnc-XKR4-2	lnc-XKR4-2:1	XLOC_006799	linc-XKR4	NA	NA	NA	inter
CUST_35009_PI429285431	8.12889	P	7.951076	P	1.13116861710568	0	lncRNA	36423-1_{1..2206}	n341942|BC033361|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4423|NULL|-1.1277600|-0.3418628	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341942|BC033361|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4423|NULL|-1.1277600|-0.3418628	chr12	 58488696	 58490901	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29600_PI429285431	8.383781	P	8.1222	P	1.19879169975054	0	lncRNA	31361-1_{1..304}	n333116|AF333247|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077763|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077763|0.9065450|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333116|AF333247|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077763|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077763|0.9065450|-1.0000000	chr21	 46931010	 46931313	+	NA	NA	NA	NA	COL18A1	NA	chr21:46921010-46933634	inner
CUST_25355_PI429285431	3.8116732	P	4.5373735	P	0.604703443671368	0	lncRNA	26885-1_{1..333}	lnc-CCDC7-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC7-4:1	chr10	 32557829	 32558161	+	lnc-CCDC7-4	lnc-CCDC7-4:1	ENSG00000227253.1	RP11-166N17.1	EPC1	"hg19_refFlat_EPC1:range=chr10:32557991-326358435'pad=0,hg19_refFlat_EPC1:range=chr10:32557991-326358435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_EPC1:range=chr10:32557991-325947995'pad=0,hg19_refFlat_EPC1:range=chr10:32557991-325947995'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr10:32557859-32568039"	NA	inner
LNCA_21_P0001408	0.9258004	A	1.283762	A	0.780266248128352	0	lncRNA	TCONS_00001252	NA	NA	NA	NA	XLOC_000540	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000540), lincRNA [TCONS_00001252]"	chr1:207559618-207559677	hs|1q32.2	Agilent_HUMAN_G3V2	TCONS_00001252	TCONS_00001252	chr1	207559618	207559677	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29191_PI429285431	0.9240922	A	0.9164716	A	1.00529617280499	0	lncRNA	30936-1_{1..1285}	n326706|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000005777|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000005777|2.2752100|-0.1455747	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326706|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000005777|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000005777|2.2752100|-0.1455747	chr1	 11592174	 11593458	+	NA	NA	NA	NA	PTCHD2	NA	chr1:11582174-11597640	inner
CUST_45781_PI429285431	0.91684496	A	1.1321393	A	0.861370404183203	0	lncRNA	50124-1_{1..2062}	"gi|300360507|ref|NR_034027.1| Homo sapiens uncharacterized LOC338739 (LOC338739), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300360507|ref|NR_034027.1| Homo sapiens uncharacterized LOC338739 (LOC338739), non-coding RNA"	Chr11	 33183203	 33185264	+	338739	NR_034027.1	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20"	NA	inter
CUST_19421_PI429285431	0.90901387	A	0.90749377	A	1.00105420831653	0	lncRNA	21082-1_{1..2419}	lnc-ANP32A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ANP32A-2:1	chr15	 69588684	 69591102	-	lnc-ANP32A-2	lnc-ANP32A-2:1	ENSG00000261634.1	RP11-352D13.6	PAQR5	NA	chr15:69591294-69601102	inter
CUST_34020_PI429285431	8.431294	P	7.964701	P	1.38184231875173	0	lncRNA	35553-1_{1..2161}	n340837|AK094291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3301|NULL|0.0884155|-0.1692575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340837|AK094291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3301|NULL|0.0884155|-0.1692575	chr17	 73126977	 73129137	+	NA	NA	NA	NA	HN1	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NT5C:range=chr17:73126583-731278025'pad=0,hg19_refFlat_NT5C:range=chr17:73126583-731278025'pad=0 3'pad=0 strand=- repeatMasking=none,-103.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10chr17:73131343-73139138"	NA	inner
CUST_9844_PI429285431	1.3208027	A	1.1017145	A	1.1639976939026	0	lncRNA	11364-1_{1..821}	lnc-C11orf74-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C11orf74-7:1	chr11	 38707609	 38708429	+	lnc-C11orf74-7	lnc-C11orf74-7:1	XLOC_009111	linc-API5-4	NA	NA	NA	inter
CUST_20816_PI429285431	0.92340446	A	0.9074881	A	1.01109346118038	0	lncRNA	22447-1_{1..572}	lnc-TAF6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TAF6-1:1	chr7	 99724630	 99725201	-	lnc-TAF6-1	lnc-TAF6-1:1	ENSG00000242798.1	RP11-506M12.1	TAF6	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60chr7:99714630-99717481"	NA	inner
CUST_18251_PI429285431	9.040135	P	9.4394245	P	0.758231606034456	0	lncRNA	19986-1_{1..1005}	lnc-AC145676.2.1-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC145676.2.1-6:3	chr7	    35335	    36339	-	lnc-AC145676.2.1-6	lnc-AC145676.2.1-6:3	ENSG00000244758	AC093627.6	LOC100132858	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80chr7:25335-36378"	NA	inter
CUST_6302_PI429285431	3.4614866	P	3.4252625	P	1.02542650940989	0	lncRNA	6226-1_{1..371}	"transcript_id ""ENST00000587826.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587826.1"" | genecode_v17"	chr19	  2458933	  2459303	-	ENSG00000267201.1	ENST00000587826.1	AC005624.2	AC005624.2-001	LMNB2	NA	chr19:2448933-2456958	inter
CUST_49954_PI429285431	2.0288842	A	1.9974184	A	1.02205001664941	0	lncRNA	53704-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026893 range=chr7:130565099-130582733 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026893 range=chr7:130565099-130582733 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	130565099	130568098	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30"	NA	inter
CUST_51456_PI429285431	1.117445	A	1.0783288	A	1.02748419342734	0	lncRNA	55033-1_{1..317}	hg19_lincRNAsTranscripts_TCONS_l2_00009693 range=chr16:32926412-32926831 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009693 range=chr16:32926412-32926831 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 32926412	 32926728	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50084_PI429285431	1.7827798	A	1.6021256	A	1.13339771578527	0	lncRNA	53818-1_{1..1142}	hg19_lincRNAsTranscripts_TCONS_l2_00027902 range=chr8:98200364-98204150 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027902 range=chr8:98200364-98204150 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 98200364	 98201505	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34643_PI429285431	2.375604	P	2.633974	A	0.836031959934644	0	lncRNA	36096-1_{1..1438}	n341542|AK023640|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4012|NULL|-0.9457430|-0.3767371	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341542|AK023640|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4012|NULL|-0.9457430|-0.3767371	chr8	 79640607	 79642044	+	NA	NA	NA	NA	IL7	NA	chr8:79645007-79652045	inter
CUST_49347_PI429285431	0.90982926	A	0.9047834	A	1.0035036471052	0	lncRNA	53160-1_{1..1517}	hg19_lincRNAsTranscripts_TCONS_l2_00023441 range=chr5:74916128-74966978 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023441 range=chr5:74916128-74966978 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 74916128	 74917644	+	NA	NA	NA	NA	POC5	NA	chr5:74970023-74976978	inner
CUST_23620_PI429285431	5.115789	P	5.3217106	P	0.866984676556506	0	lncRNA	25187-1_{1..474}	lnc-WDFY4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDFY4-1:1	chr10	 50226871	 50227344	+	lnc-WDFY4-1	lnc-WDFY4-1:1	ENSG00000226576.1	RP11-523O18.1	VSTM4	NA	chr10:50222333-50236942	inner
CUST_7818_PI429285431	6.609002	P	6.539468	P	1.04937767297496	0	lncRNA	9442-1_{1..572}	lnc-CRYBA4-1:26	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:26	chr22	 27061421	 27061992	+	lnc-CRYBA4-1	lnc-CRYBA4-1:26	ENSG00000225783	XLOC_014192	NA	NA	NA	inter
CUST_46289_PI429285431	8.4632225	P	8.921231	P	0.727990485348213	0	lncRNA	50524-1_{1..1260}	"gi|373251204|ref|NR_023314.3| Homo sapiens thiamine triphosphatase (THTPA), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|373251204|ref|NR_023314.3| Homo sapiens thiamine triphosphatase (THTPA), transcript variant 3, non-coding RNA"	Chr14	 24025198	 24026457	+	79178	NR_023314.3	NA	NA	NA	NA	NA	inter
CUST_27546_PI429285431	2.5404775	A	2.9512732	A	0.752208388359087	0	lncRNA	29121-1_{1..327}	n324732|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319066|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319066|-1.1657600|-0.3007196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324732|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319066|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319066|-1.1657600|-0.3007196	chr22	 18725316	 18725642	+	NA	NA	NA	NA	LOC642643	NA	chr22:18715316-18735766	inter
LNCA_21_P0001621	0.923617	A	1.7063203	A	0.581276584931485	0	lncRNA	THC2776551	NA	NA	NA	NA	XLOC_001197	NA	NA	THC2776551	NA	"BROAD Institute lincRNA (XLOC_001197), lincRNA [TCONS_00001813]"	chr1:213029650-213029591	hs|1q32.3	Agilent_HUMAN_G3V2	THC2776551	THC2776551	chr1	213029591	213029650	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1099_PI429285431	1.1953249	A	1.4800855	A	0.82087781350992	0	lncRNA	1088-1_{1..529}	"transcript_id ""ENST00000431734.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431734.1"" | genecode_v17"	chr2	145425553	145426081	+	ENSG00000226674.3	ENST00000431734.1	AC074093.1	AC074093.1-005	NA	NA	NA	inter
CUST_14118_PI429285431	4.760915	P	5.3131514	P	0.681962161968385	0	lncRNA	15767-1_{1..2774}	lnc-KB-1507C5.2.1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-KB-1507C5.2.1-3:4	chr8	103821162	103823935	+	lnc-KB-1507C5.2.1-3	lnc-KB-1507C5.2.1-3:4	XLOC_006894	linc-ATP6V1C1-3	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50"	NA	inter
CUST_13622_PI429285431	0.9049514	A	0.9107008	A	0.996022749893451	0	lncRNA	15262-1_{1..318}	lnc-VWC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VWC2-1:1	chr7	 49760358	 49760675	+	lnc-VWC2-1	lnc-VWC2-1:1	XLOC_006094	linc-VWC2-1	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60"	NA	inter
CUST_42600_PI429285431	1.9223081	A	1.4101043	A	1.42622717682799	0	lncRNA	45456-1_{1..112}	ENST00000517059 ncrna:snoRNA chromosome:GRCh37:15:29526072:29526183:1 gene:ENSG00000252868 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517059 ncrna:snoRNA chromosome:GRCh37:15:29526072:29526183:1 gene:ENSG00000252868 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 29526072	 29526183	+	ENSG00000252868	ENST00000517059	NA	NA	FAM189A1	"hg19_refFlat_DCAF6:range=chr1:167906150-1680446735'pad=0,hg19_refFlat_DCAF6:range=chr1:167906150-1680446735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50chr15:29516072-29536183"	NA	inner
CUST_26575_PI429285431	1.9841533	A	2.3623798	A	0.769382809161539	0	lncRNA	28079-1_{1..346}	lnc-PHC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHC3-1:1	chr3	169703184	169703529	-	lnc-PHC3-1	lnc-PHC3-1:1	ENSG00000240373.1	SEC62-AS1	SEC62	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-19.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60chr3:169693184-169713503"	NA	inner
CUST_17738_PI429285431	1.2670887	A	1.301286	A	0.976574965450215	0	lncRNA	19468-4_{9001..11768}	lnc-IMPAD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IMPAD1-1:1	chr8	 58136740	 58139507	-	lnc-IMPAD1-1	lnc-IMPAD1-1:1	XLOC_007089	linc-IMPAD1-1	NA	NA	NA	inter
CUST_30653_PI429285431	0.9272614	A	0.92954576	A	0.99841785521937	0	lncRNA	32435-1_{1..248}	n336053|X85152|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324117|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324117|1.5484000|-0.0934506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336053|X85152|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324117|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324117|1.5484000|-0.0934506	chr2	 89185431	 89185678	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38058_PI429285431	0.9104488	A	0.89927614	A	1.00777436241211	0	lncRNA	39135-1_{1..2776}	n377629|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030018||1.1621500|-0.3520455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377629|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030018||1.1621500|-0.3520455	chr6	   837733	   840508	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_52028_PI429285431	4.551899	P	4.4933796	P	1.04139645442581	0	lncRNA	55558-1_{1..1827}	hg19_lincRNAsTranscripts_TCONS_l2_00016979 range=chr21:17998030-18013444 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016979 range=chr21:17998030-18013444 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr21	 17998030	 17999856	+	NA	NA	NA	NA	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.74;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.96;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70"	NA	inter
CUST_43093_PI429285431	0.9121616	A	0.92973685	A	0.987891668033755	0	lncRNA	47435-1_{1..130}	ENST00000364588 ncrna:snRNA chromosome:GRCh37:3:172514219:172514348:-1 gene:ENSG00000201458 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364588 ncrna:snRNA chromosome:GRCh37:3:172514219:172514348:-1 gene:ENSG00000201458 gene_biotype:snRNA transcript_biotype:snRNA	chr3	172514219	172514348	-	ENSG00000201458	ENST00000364588	NA	NA	ECT2	NA	chr3:172504219-172524348	inner
CUST_47871_PI429285431	0.9035604	A	0.8996268	A	1.00273028420498	0	lncRNA	51770-1_{1..595}	"gi|410171378|ref|XR_171205.1| PREDICTED: Homo sapiens uncharacterized LOC101060595 (LOC101060595), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171378|ref|XR_171205.1| PREDICTED: Homo sapiens uncharacterized LOC101060595 (LOC101060595), misc_RNA"	NA	NA	NA	NA	NA	XR_171205.1	NA	NA	NA	NA	NA	Unknown
CUST_11106_PI429285431	2.9960616	A	2.4761558	P	1.43386162173259	0	lncRNA	12662-1_{1..662}	lnc-GTPBP4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GTPBP4-2:1	chr10	   997545	   998206	+	lnc-GTPBP4-2	lnc-GTPBP4-2:1	XLOC_008337	linc-GTPBP4-1	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30"	NA	inter
CUST_41624_PI429285431	5.936231	P	6.7727165	P	0.560006120468699	0	lncRNA	43000-1_{1..113}	ENST00000390196 ncrna:miRNA chromosome:GRCh37:6:72294792:72294904:1 gene:ENSG00000211530 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390196 ncrna:miRNA chromosome:GRCh37:6:72294792:72294904:1 gene:ENSG00000211530 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 72294792	 72294904	+	ENSG00000211530	ENST00000390196	NA	NA	NA	NA	NA	inter
CUST_29826_PI429285431	1.2788012	A	0.9692576	A	1.23931557749373	0	lncRNA	31589-1_{1..409}	n333550|D26122|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000101138|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000101138|0.1394120|-0.1821104	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333550|D26122|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000101138|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000101138|0.1394120|-0.1821104	chr11	 64537501	 64537909	-	NA	NA	NA	NA	SF1	NA	chr11:64532076-64546316	inter
CUST_25981_PI429285431	0.9020357	A	0.89833933	A	1.00256541349987	0	lncRNA	27501-1_{1..463}	lnc-RASA1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RASA1-6:1	chr5	 88018441	 88018903	+	lnc-RASA1-6	lnc-RASA1-6:1	ENSG00000245864.2	CTC-467M3.1	MEF2C	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MEF2C:range=chr5:88018421-881196055'pad=0,hg19_refFlat_MEF2C:range=chr5:88018421-881196055'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90chr5:88014058-88028648"	NA	inner
CUST_2169_PI429285431	9.379236	P	9.2222	P	1.1149940411597	0	lncRNA	2160-1_{1..1265}	"transcript_id ""ENST00000506550.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000506550.1"" | genecode_v17"	chr5	 61028601	 61029865	-	ENSG00000251575.2	ENST00000506550.1	CTD-2170G1.2	CTD-2170G1.2-001	NA	NA	NA	inter
LNCA_21_P0009374	2.4250782	A	2.5965128	A	0.887959265132732	0	lncRNA	TCONS_00025799	NA	NA	NA	NA	XLOC_012069	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012069), lincRNA [TCONS_00025799]"	chr17:624268-624327	hs|17p13.3	Agilent_HUMAN_G3V2	TCONS_00025799	TCONS_00025799	chr17	   624268	   624327	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15492_PI429285431	0.9210037	A	1.2920883	A	0.773200995425083	0	lncRNA	17181-1_{1..452}	lnc-KCNJ4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNJ4-1:1	chr22	 38818964	 38819415	-	lnc-KCNJ4-1	lnc-KCNJ4-1:1	XLOC_014372	linc-CSNK1E	KCNJ4	NA	chr22:38822332-38829028	inter
CUST_10203_PI429285431	0.9037819	A	0.9255368	A	0.985033776437607	0	lncRNA	11729-1_{1..792}	lnc-PLEKHG6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLEKHG6-2:1	chr12	  6405232	  6406023	+	lnc-PLEKHG6-2	lnc-PLEKHG6-2:1	XLOC_009633	linc-PLEKHG6-1	PLEKHG6	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90chr12:6395232-6415936"	NA	inter
CUST_49738_PI429285431	6.6547933	P	5.702869	P	1.93445115351104	0	lncRNA	53509-1_{1..1780}	hg19_lincRNAsTranscripts_TCONS_l2_00025812 range=chr7:39830176-39832047 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025812 range=chr7:39830176-39832047 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 39830176	 39831955	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3207_PI429285431	1.0708914	A	1.2747797	A	0.868207445561006	0	lncRNA	3185-1_{1..522}	"transcript_id ""ENST00000521953.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521953.1"" | genecode_v17"	chr8	 82066565	 82067086	+	ENSG00000253214.1	ENST00000521953.1	RP11-1149M10.2	RP11-1149M10.2-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50"	NA	inter
CUST_18697_PI429285431	2.171502	A	1.4415703	A	1.6585605702746	0	lncRNA	20396-1_{1..3000}	lnc-XDH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XDH-1:1	chr2	 31805690	 31808689	-	lnc-XDH-1	lnc-XDH-1:1	ENSG00000049319	SRD5A2	SRD5A2	NA	chr2:31795690-31806040	inner
LNCA_21_P0009514	0.96566194	A	0.92853004	A	1.02607195081918	0	lncRNA	TCONS_00026394	NA	NA	NA	NA	XLOC_012743	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012743), lincRNA [TCONS_00026394]"	chr18:2510482-2510423	hs|18p11.32	Agilent_HUMAN_G3V2	TCONS_00026394	TCONS_00026394	chr18	  2510423	  2510482	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11867_PI429285431	7.1294966	P	7.145318	P	0.989093354688526	0	lncRNA	13446-1_{1..537}	lnc-DUSP4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DUSP4-3:1	chr8	 29371278	 29371814	-	lnc-DUSP4-3	lnc-DUSP4-3:1	XLOC_007037	linc-DUSP4-5	NA	NA	NA	inter
CUST_11270_PI429285431	0.92105985	A	1.7138572	A	0.577223783539523	0	lncRNA	12831-1_{1..1309}	lnc-FOXG1-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXG1-6:4	chr14	 27204445	 27205753	+	lnc-FOXG1-6	lnc-FOXG1-6:4	XLOC_010776	linc-FOXG1-5	NA	NA	NA	inter
CUST_10361_PI429285431	2.0978477	A	1.1592612	A	1.91664945516445	0	lncRNA	11886-1_{1..526}	lnc-MAPK6-10:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAPK6-10:3	chr15	 52981559	 52982084	+	lnc-MAPK6-10	lnc-MAPK6-10:3	XLOC_011256	linc-UNC13C-5	NA	NA	NA	inter
LNCA_21_P0012639	3.7065525	P	4.269725	P	0.676812209681099	0	lncRNA	TCONS_l2_00020919	NA	NA	NA	NA	XLOC_l2_010963	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010963), lincRNA [TCONS_l2_00020919]"	chr4:183958025-183958084	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_l2_00020919	TCONS_l2_00020919	chr4	183958025	183958084	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001887	2.7842422	A	3.0906444	P	0.808655876779284	0	lncRNA	ENST00000427042	NA	NA	NA	NA	XLOC_001593	NA	ENST00000427042	NA	NA	"BROAD Institute lincRNA (XLOC_001593), lincRNA [TCONS_00002954]"	chr2:102103207-102103266	hs|2q11.2	Agilent_HUMAN_G3V2	ENST00000427042	ENST00000427042	chr2	102103207	102103266	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6446_PI429285431	10.452464	P	10.153557	P	1.23021203942044	0	lncRNA	6387-1_{1..567}	"transcript_id ""ENST00000592788.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592788.1"" | genecode_v17"	chr19	 32079102	 32079668	+	ENSG00000267465.1	ENST00000592788.1	AC011525.4	AC011525.4-002	THEG5	"hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0,hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20chr19:32083187-32083945"	NA	inner
CUST_7077_PI429285431	0.9307842	A	0.9221959	A	1.00597070998518	0	lncRNA	7017-8_{21001..24000}	"transcript_id ""ENST00000604411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000604411.1"" | genecode_v17"	chrX	 73033040	 73036039	+	ENSG00000270641.1	ENST00000604411.1	TSIX	TSIX-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_49545_PI429285431	0.9319635	A	0.9195016	A	1.00867534542468	0	lncRNA	53338-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00024808 range=chr6:69339822-69344886 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024808 range=chr6:69339822-69344886 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 69339822	 69342821	-	NA	NA	NA	NA	BAI3	NA	chr6:69345632-69354886	inter
CUST_46765_PI429285431	13.118767	P	12.818564	P	1.23131765848183	0	lncRNA	50915-1_{1..1023}	"gi|343962630|ref|NR_045029.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 32, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|343962630|ref|NR_045029.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 32, non-coding RNA"	Chr17	 16342301	 16343323	+	125144	NR_045029.1	NA	NA	NA	NA	NA	inter
LNCA_33_P3296289	1.9099575	A	1.6114616	A	1.22986153698862	0	lncRNA	XR_132508	XR_132508	XR_132508	100128508	Hs.657987	LOC100128508	PP12100	NA	THC2485740	NA	"PREDICTED: Homo sapiens PP12100 (LOC100128508), miscRNA [XR_132508]"	chr5:14775921-14775862	hs|5p15.2	Agilent_HUMAN_G3V2	XR_132508	XR_132508	chr5	 14775862	 14775921	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46461_PI429285431	2.1058276	A	2.6791368	A	0.672073442114929	0	lncRNA	50662-1_{1..1649}	"gi|67191181|ref|NR_002318.2| Homo sapiens cation channel, sperm associated 2 pseudogene 1 (CATSPER2P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|67191181|ref|NR_002318.2| Homo sapiens cation channel, sperm associated 2 pseudogene 1 (CATSPER2P1), non-coding RNA"	Chr15	 44028132	 44029780	-	440278	NR_002318.2	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40"	NA	inter
CUST_40623_PI429285431	0.91569126	A	1.0703354	A	0.898353936553565	0	lncRNA	41364-1_{1..1047}	n410105|NR_036536|lncRNA|Homosapiens||RefGeneNoncode|NR_036536||-0.2917610|-0.2742659	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410105|NR_036536|lncRNA|Homosapiens||RefGeneNoncode|NR_036536||-0.2917610|-0.2742659	chr5	138609440	138610486	+	NA	NA	NA	NA	MATR3	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30chr5:138609441-138628873"	NA	inter
CUST_46469_PI429285431	0.93241006	A	0.95415896	A	0.985037873086435	0	lncRNA	50668-2_{3001..4139}	"gi|213513047|ref|NR_024490.1| Homo sapiens GABPB1 antisense RNA 1 (GABPB1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|213513047|ref|NR_024490.1| Homo sapiens GABPB1 antisense RNA 1 (GABPB1-AS1), non-coding RNA"	Chr15	 50649371	 50650509	+	100129387	NR_024490.1	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00"	NA	inter
CUST_30619_PI429285431	1.5251597	A	2.4436762	A	0.529052757076757	0	lncRNA	32401-1_{1..399}	n335958|X72444|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323286|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323286|2.8276000|-0.2319044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335958|X72444|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323286|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323286|2.8276000|-0.2319044	chr2	 89160400	 89160798	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47101_PI429285431	1.7156612	A	1.6438309	A	1.05104926996327	0	lncRNA	51182-1_{1..1394}	"gi|397139710|ref|XR_158931.1| PREDICTED: Homo sapiens uncharacterized LOC100996681 (LOC100996681), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">gi|397139710|ref|XR_158931.1| PREDICTED: Homo sapiens uncharacterized LOC100996681 (LOC100996681), misc_RNA"	Chr19	 34046367	 34047760	+	100996681	XR_158931.2	NA	NA	NA	"hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0,hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_23571_PI429285431	8.795128	P	8.664692	P	1.09462446011276	0	lncRNA	25139-1_{1..943}	lnc-TEX261-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TEX261-1:3	chr2	 71175357	 71176299	-	lnc-TEX261-1	lnc-TEX261-1:3	ENSG00000239322.1	AC007040.7	ATP6V1B1	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10chr2:71165357-71185682"	NA	inner
LNCA_21_P0001115	1.0527134	A	0.98701036	A	1.04659483187501	0	lncRNA	ENST00000445180	NA	NA	NA	NA	XLOC_000766	NA	ENST00000445180	NA	NA	"BROAD Institute lincRNA (XLOC_000766), lincRNA [TCONS_00000496]"	chr1:30496932-30496873	hs|1p35.2	Agilent_HUMAN_G3V2	ENST00000445180	ENST00000445180	chr1	 30496873	 30496932	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28696_PI429285431	1.1257432	A	0.9251792	A	1.14914750918907	0	lncRNA	30394-1_{1..409}	n326083|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046625|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046625|-1.0497200|-0.2914743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326083|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046625|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046625|-1.0497200|-0.2914743	chr10	  6208010	  6208418	-	NA	NA	NA	NA	PFKFB3	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-16.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.41;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60chr10:6198010-6229526"	NA	inner
CUST_44406_PI429285431	1.221454	A	0.9478975	A	1.20878402547806	0	lncRNA	49021-1_{1..1489}	"gi|382544954|ref|NR_047515.1| Homo sapiens solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 (SLC9B1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|382544954|ref|NR_047515.1| Homo sapiens solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 (SLC9B1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_047515.1	NA	NA	NA	"hg19_refFlat_CISD2:range=chr4:103790242-1038085875'pad=0,hg19_refFlat_CISD2:range=chr4:103790242-1038085875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80"	NA	Unknown
CUST_49796_PI429285431	4.367576	P	4.9922113	P	0.648583712584463	0	lncRNA	53553-1_{1..712}	hg19_lincRNAsTranscripts_TCONS_l2_00025914 range=chr7:63019284-63023112 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025914 range=chr7:63019284-63023112 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 63019284	 63019995	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24419_PI429285431	2.4578142	A	2.4814923	A	0.983721541502487	0	lncRNA	25972-1_{1..476}	lnc-EIF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF1-1:1	chr17	 39658520	 39658995	+	lnc-EIF1-1	lnc-EIF1-1:1	ENSG00000229732.1	AC019349.5	KRT13	"hg19_refFlat_KRT13:range=chr17:39657596-396618025'pad=0,hg19_refFlat_KRT13:range=chr17:39657596-396618025'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_KRT13:range=chr17:39657508-396618025'pad=0,hg19_refFlat_KRT13:range=chr17:39657508-396618025'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60chr17:39657233-39661865"	NA	inner
CUST_16543_PI429285431	4.091684	P	4.3376126	P	0.843272843388043	0	lncRNA	18244-1_{1..2750}	lnc-CCDC114-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC114-1:1	chr19	 48824935	 48827684	-	lnc-CCDC114-1	lnc-CCDC114-1:1	XLOC_013373	linc-CCDC114	TMEM143	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60chr19:48835616-48837644"	NA	inter
CUST_47240_PI429285431	0.9130044	A	0.90977526	A	1.00224077608128	0	lncRNA	51314-1_{1..1926}	"gi|300796246|ref|NR_034149.1| Homo sapiens long intergenic non-protein coding RNA 656 (LINC00656), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300796246|ref|NR_034149.1| Homo sapiens long intergenic non-protein coding RNA 656 (LINC00656), non-coding RNA"	Chr20	 23105705	 23107630	-	200261	NR_034149.1	NA	NA	NA	NA	NA	inter
CUST_13346_PI429285431	1.5451558	A	1.4830067	A	1.04401981946209	0	lncRNA	14983-1_{1..202}	lnc-ATP6V1B2-5:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP6V1B2-5:9	chr8	 20813196	 20813397	+	lnc-ATP6V1B2-5	lnc-ATP6V1B2-5:9	XLOC_006734	linc-XPO7-4	NA	NA	NA	inter
CUST_32313_PI429285431	1.5975621	A	1.2169396	A	1.30190348494551	0	lncRNA	33996-1_{1..1028}	n338890|BC018017|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1316|NULL|-0.9775780|-0.3080441	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338890|BC018017|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1316|NULL|-0.9775780|-0.3080441	chr2	 77213090	 77214117	+	NA	NA	NA	NA	LRRTM4	NA	chr2:77203090-77246914	inner
CUST_46272_PI429285431	1.9522175	A	2.2044048	A	0.839622480647745	0	lncRNA	50511-1_{1..3000}	"gi|388890248|ref|NR_051961.1| Homo sapiens coagulation factor VII (serum prothrombin conversion accelerator) (F7), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388890248|ref|NR_051961.1| Homo sapiens coagulation factor VII (serum prothrombin conversion accelerator) (F7), transcript variant 4, non-coding RNA"	Chr13	113760102	113763101	+	2155	NR_051961.1	NA	NA	NA	NA	NA	inter
CUST_33540_PI429285431	2.2196782	A	1.5009508	A	1.6457296973885	0	lncRNA	35108-1_{1..1476}	n340287|AF195420|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2748|NULL|6.9530900|-0.1006420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340287|AF195420|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2748|NULL|6.9530900|-0.1006420	chr4	183164583	183166058	+	NA	NA	NA	NA	ODZ3	NA	chr4:183245137-183604372	inner
CUST_11967_PI429285431	1.2939559	A	0.9137849	A	1.30149611024943	0	lncRNA	13545-1_{1..1703}	lnc-BASP1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BASP1-3:5	chr5	 17441578	 17443280	+	lnc-BASP1-3	lnc-BASP1-3:5	XLOC_004308	linc-PRDM9-8	NA	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10"	NA	inter
CUST_40030_PI429285431	1.0025373	A	0.9697206	A	1.02300748440872	0	lncRNA	40888-1_{1..1980}	n407208|NR_026674|lncRNA|Homosapiens||RefGeneNoncode|NR_026674||3.7043600|-0.2698488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407208|NR_026674|lncRNA|Homosapiens||RefGeneNoncode|NR_026674||3.7043600|-0.2698488	chr16	 86588925	 86590904	+	NA	NA	NA	NA	MTHFSD	NA	chr16:86578925-86588841	inter
CUST_28982_PI429285431	9.324953	P	9.418786	P	0.937029907034443	0	lncRNA	30703-1_{1..511}	n326463|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033591|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033591|-1.1786300|-0.2672855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326463|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033591|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033591|-1.1786300|-0.2672855	chr1	117639664	117640174	+	NA	NA	NA	NA	TTF2	NA	chr1:117629664-117645492	inner
CUST_11944_PI429285431	6.9167266	P	6.982303	P	0.955563465013532	0	lncRNA	13524-1_{1..2706}	lnc-CSTB-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CSTB-1:5	chr21	 45230112	 45232817	-	lnc-CSTB-1	lnc-CSTB-1:5	XLOC_014107	linc-CSTB-3	RRP1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70chr21:45220112-45223983"	NA	inter
CUST_41282_PI429285431	1.6388379	A	2.097572	A	0.727624436344445	0	lncRNA	42265-1_{1..79}	ENST00000583759 ncrna:miRNA chromosome:GRCh37:5:1063011:1063089:-1 gene:ENSG00000263834 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583759 ncrna:miRNA chromosome:GRCh37:5:1063011:1063089:-1 gene:ENSG00000263834 gene_biotype:miRNA transcript_biotype:miRNA	chr5	  1063011	  1063089	-	ENSG00000263834	ENST00000583759	NA	NA	SLC12A7	NA	chr5:1053011-1073089	inner
LNCA_21_P0002320	1.0430089	A	0.989831	A	1.03754786962208	0	lncRNA	TCONS_00003950	NA	NA	NA	NA	XLOC_001767	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001767), lincRNA [TCONS_00003950]"	chr2:177711007-177711066	hs|2q31.1	Agilent_HUMAN_G3V2	TCONS_00003950	TCONS_00003950	chr2	177711007	177711066	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36285_PI429285431	1.1230776	A	3.054549	P	0.262161656685875	0	lncRNA	37519-1_{1..3000}	n344813|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_362|NULL|-1.3714300|-0.2082293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344813|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_362|NULL|-1.3714300|-0.2082293	chr1	 94158693	 94161692	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90"	NA	inner
CUST_31913_PI429285431	0.9013231	A	0.90708363	A	0.996015065878375	0	lncRNA	33643-1_{1..2763}	n338468|AK055200|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|865|NULL|10.2385000|-0.3048032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338468|AK055200|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|865|NULL|10.2385000|-0.3048032	chr14	 96792024	 96794786	-	NA	NA	NA	NA	ATG2B	NA	chr14:96782024-96829678	inner
CUST_28680_PI429285431	0.9103516	A	0.89967716	A	1.00742639791359	0	lncRNA	30376-1_{1..873}	n326064|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046745|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046745|-0.6785300|-0.2251283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326064|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046745|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046745|-0.6785300|-0.2251283	chr10	 10866407	 10867279	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26837_PI429285431	0.91305256	A	0.9033641	A	1.00673812845743	0	lncRNA	28351-1_{1..580}	n323908|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055790|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055790|-1.1154800|-0.2561470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323908|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055790|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055790|-1.1154800|-0.2561470	chrX	 13263280	 13263859	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18619_PI429285431	8.969916	P	9.017554	P	0.967519068346143	0	lncRNA	20325-1_{1..2198}	lnc-RP11-706O15.1.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-RP11-706O15.1.1-1:4	chrX	  3781543	  3783740	-	lnc-RP11-706O15.1.1-1	lnc-RP11-706O15.1.1-1:4	ENSG00000234449	RP11-706O15.3	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20"	NA	inter
CUST_52093_PI429285431	5.2675166	P	3.8388546	P	2.69196937999498	0	lncRNA	55619-1_{1..2298}	hg19_lincRNAsTranscripts_TCONS_l2_00017559 range=chr22:17129416-17133908 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017559 range=chr22:17129416-17133908 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17129416	 17131713	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70"	NA	inter
CUST_5442_PI429285431	6.3583975	P	6.4078817	P	0.966281737358272	0	lncRNA	5376-1_{1..446}	"transcript_id ""ENST00000569048.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569048.1"" | genecode_v17"	chr16	 18027046	 18027491	-	ENSG00000259929.1	ENST00000569048.1	CTA-481E9.4	CTA-481E9.4-001	NA	"hg19_refFlat_RPL7:range=chr8:74203279-742058475'pad=0,hg19_refFlat_RPL7:range=chr8:74203279-742058475'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90"	NA	inter
CUST_13145_PI429285431	2.4814923	A	2.0190973	A	1.37782723438485	0	lncRNA	14772-2_{3001..6000}	lnc-DPH3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DPH3-1:1	chr3	 16289555	 16292554	-	lnc-DPH3-1	lnc-DPH3-1:1	XLOC_003061	linc-ANKRD28	DPH3	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30chr3:16298568-16300513"	NA	inter
CUST_31379_PI429285431	0.91690403	A	0.9098205	A	1.0049220023004	0	lncRNA	33157-1_{1..1112}	n337845|BC030766|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|228|NULL|-0.9822980|-0.2882373	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337845|BC030766|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|228|NULL|-0.9822980|-0.2882373	chrX	123509752	123510863	-	NA	NA	NA	NA	ODZ1	NA	chrX:123509753-123520852	inner
CUST_44123_PI429285431	1.7144587	A	1.3351387	A	1.30072862539537	0	lncRNA	48789-1_{1..2276}	"gi|197383729|ref|NR_002223.3| Homo sapiens tetra-peptide repeat homeobox-like (TPRXL), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|197383729|ref|NR_002223.3| Homo sapiens tetra-peptide repeat homeobox-like (TPRXL), non-coding RNA"	Chr3	 13978807	 13981082	+	348825	NR_002223.3	NA	NA	NA	NA	NA	inter
CUST_20821_PI429285431	1.8720971	A	1.4819508	A	1.31052629422696	0	lncRNA	22452-1_{1..727}	lnc-CFC1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CFC1B-1:1	chr2	131294191	131294917	+	lnc-CFC1B-1	lnc-CFC1B-1:1	ENSG00000225341.1	AC013269.4	CFC1B	NA	chr2:131284191-131285565	inter
LNCA_19_P00315691	5.5402346	P	5.625225	P	0.942790809428164	0	lncRNA	ENST00000424516	NA	NA	NA	NA	XLOC_l2_013734	NA	ENST00000424516	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013734), lincRNA [TCONS_l2_00027288]"	chr7:19982961-19982902	hs|7p21.1	Agilent_HUMAN_G3V2	ENST00000424516	ENST00000424516	chr7	 19982902	 19982961	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2086_PI429285431	1.2175219	A	0.915457	A	1.23290778688383	0	lncRNA	2077-1_{1..342}	"transcript_id ""ENST00000503953.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503953.1"" | genecode_v17"	chr5	 10775170	 10775511	-	ENSG00000250576.1	ENST00000503953.1	CTD-2154B17.1	CTD-2154B17.1-001	NA	NA	NA	inter
CUST_7232_PI429285431	0.9221517	A	0.92799395	A	0.995958649211186	0	lncRNA	7799-1_{1..330}	"transcript_id ""ENST00000363221.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000363221.1"" | genecode_v17"	chr6	 76364686	 76365015	-	ENSG00000200091.1	ENST00000363221.1	RN7SKP163	RN7SKP163-201	SENP6	NA	chr6:76354686-76375015	inner
CUST_18675_PI429285431	0.9137411	A	0.9088717	A	1.0033809133191	0	lncRNA	20376-1_{1..844}	lnc-STARD13-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STARD13-2:1	chr13	 34250815	 34251658	-	lnc-STARD13-2	lnc-STARD13-2:1	ENSG00000230490	RP11-141M1.3	NA	NA	NA	inner
LNCA_21_P0001680	8.479705	P	8.408255	P	1.05077224581916	0	lncRNA	TCONS_00002039	NA	NA	NA	NA	XLOC_000208	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000208), lincRNA [TCONS_00002039]"	chr1:56345342-56345401	hs|1p32.2	Agilent_HUMAN_G3V2	TCONS_00002039	TCONS_00002039	chr1	 56345342	 56345401	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008318	0.9798737	A	0.9266709	A	1.03756577719379	0	lncRNA	TCONS_00022963	NA	NA	NA	NA	XLOC_010798	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010798), lincRNA [TCONS_00022963]"	chr14:36690617-36690676	hs|14q13.3	Agilent_HUMAN_G3V2	TCONS_00022963	TCONS_00022963	chr14	 36690617	 36690676	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6348_PI429285431	12.783281	P	12.869891	P	0.941733006370341	0	lncRNA	6272-1_{1..61}	"transcript_id ""ENST00000600745.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600745.1"" | genecode_v17"	chr19	 15560359	 15560419	+	ENSG00000269782.1	ENST00000600745.1	MIR1470	MIR1470-001	WIZ	NA	chr19:15550359-15560762	inner
LNCA_21_P0009707	0.9821685	A	0.9260534	A	1.03966237742077	0	lncRNA	THC2615682	NA	NA	NA	NA	XLOC_013038	NA	NA	THC2615682	NA	"BROAD Institute lincRNA (XLOC_013038), lincRNA [TCONS_00026987]"	chr19:032539690-032539749	hs|19q13.11	Agilent_HUMAN_G3V2	THC2615682	THC2615682	chr19	 32539690	 32539749	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25861_PI429285431	1.4071605	A	0.9833149	A	1.34149864743223	0	lncRNA	27382-1_{1..594}	lnc-RP11-148O21.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-148O21.2.1-1:1	chr8	 11417293	 11417886	-	lnc-RP11-148O21.2.1-1	lnc-RP11-148O21.2.1-1:1	ENSG00000255354.1	RP11-148O21.2	BLK	NA	chr8:11407293-11422108	inner
CUST_25045_PI429285431	3.0568647	P	3.0634003	A	0.995480112860824	0	lncRNA	26584-1_{1..1488}	lnc-BAIAP2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BAIAP2-2:2	chr17	 79154926	 79156413	+	lnc-BAIAP2-2	lnc-BAIAP2-2:2	ENSG00000225180.2	AATK-AS1	AZI1	NA	chr17:79163393-79165778	inter
CUST_25851_PI429285431	4.3963075	P	4.8097587	P	0.750825107690352	0	lncRNA	27372-1_{1..2102}	lnc-CHMP4A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHMP4A-1:1	chr14	 24685125	 24687226	-	lnc-CHMP4A-1	lnc-CHMP4A-1:1	ENSG00000260669.2	AL136419.6	NEDD8	"hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-61.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-63.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30chr14:24686057-24695193"	NA	inner
CUST_31355_PI429285431	0.91110027	A	0.9086278	A	1.00171525497935	0	lncRNA	33136-2_{3001..4460}	n337822|AL049291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|205|NULL|-0.9573070|-0.3814447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337822|AL049291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|205|NULL|-0.9573070|-0.3814447	chrX	107763345	107764804	+	NA	NA	NA	NA	COL4A5	NA	chrX:107750345-107774754	inner
CUST_12852_PI429285431	0.92813826	A	0.91425323	A	1.00967083257962	0	lncRNA	14478-1_{1..2207}	lnc-B3GAT2-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-B3GAT2-3:9	chr6	 72127023	 72129229	-	lnc-B3GAT2-3	lnc-B3GAT2-3:9	XLOC_005764	linc-B3GAT2-4	NA	NA	NA	inter
CUST_10131_PI429285431	1.1643637	A	0.943847	A	1.1651508095199	0	lncRNA	11654-1_{1..435}	lnc-PCDH10-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH10-5:1	chr4	135560735	135561169	+	lnc-PCDH10-5	lnc-PCDH10-5:1	XLOC_003694	linc-CCRN4L-17	NA	NA	NA	inter
CUST_20154_PI429285431	5.689065	P	5.969384	P	0.823408929935834	0	lncRNA	21799-1_{1..801}	lnc-SGSH-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SGSH-1:3	chr17	 78179132	 78179932	-	lnc-SGSH-1	lnc-SGSH-1:3	ENSG00000262580.1	RP11-334C17.5	CARD14	"hg19_refFlat_CARD14:range=chr17:78155238-781762235'pad=0,hg19_refFlat_CARD14:range=chr17:78155238-781762235'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20;hg19_refFlat_CARD14:range=chr17:78155238-781821445'pad=0,hg19_refFlat_CARD14:range=chr17:78155238-781821445'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20chr17:78169132-78182851"	NA	inner
LNCA_21_P0012898	0.97813416	A	0.92286634	A	1.03905197362967	0	lncRNA	TCONS_l2_00022832	NA	NA	NA	NA	XLOC_l2_011987	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011987), lincRNA [TCONS_l2_00022832]"	chr5:34164688-34164629	hs|5p13.2	Agilent_HUMAN_G3V2	TCONS_l2_00022832	TCONS_l2_00022832	chr5	 34164629	 34164688	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9671_PI429285431	3.1717257	P	3.6833029	P	0.70145516549584	0	lncRNA	11188-1_{1..742}	lnc-RGL4-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGL4-4:3	chr22	 23852140	 23852881	+	lnc-RGL4-4	lnc-RGL4-4:3	XLOC_014172	linc-RGL4-6	NA	NA	NA	inter
CUST_37766_PI429285431	1.211155	A	1.3670087	A	0.89760106947207	0	lncRNA	38863-1_{1..441}	n346274|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1824|NULL|-1.3056900|-0.2500568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346274|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1824|NULL|-1.3056900|-0.2500568	chr13	 34235411	 34235851	-	NA	NA	NA	NA	NA	NA	NA	inner
CUST_35738_PI429285431	4.3191767	P	4.555344	P	0.848997787963381	0	lncRNA	37155-1_{1..480}	n342907|AX721242|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5415|NULL|0.4139970|-0.2376712	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342907|AX721242|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5415|NULL|0.4139970|-0.2376712	chr12	120888216	120888695	-	NA	NA	NA	NA	COX6A1	NA	chr12:120878216-120878532	inter
CUST_21092_PI429285431	2.0123193	A	0.92450583	A	2.12551651708858	0	lncRNA	22717-1_{1..438}	lnc-IL2RA-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL2RA-3:1	chr10	  6244403	  6244840	-	lnc-IL2RA-3	lnc-IL2RA-3:1	ENSG00000213994.3	RP11-414H17.5	PFKFB3	NA	chr10:6234403-6254656	inner
CUST_51536_PI429285431	2.0225158	A	1.824054	A	1.14747426664436	0	lncRNA	55103-1_{1..529}	hg19_lincRNAsTranscripts_TCONS_l2_00011033 range=chr17:34207-50139 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011033 range=chr17:34207-50139 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	    34207	    34735	-	NA	NA	NA	NA	DOC2B	NA	chr17:24207-31420	inter
CUST_44667_PI429285431	2.4884017	A	3.2692132	P	0.582039310467094	0	lncRNA	49228-1_{1..1200}	"gi|337298629|ref|NR_038980.1| Homo sapiens uncharacterized LOC100506207 (LOC100506207), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|337298629|ref|NR_038980.1| Homo sapiens uncharacterized LOC100506207 (LOC100506207), transcript variant 2, non-coding RNA"	Chr6	  8435856	  8437055	+	100506207	NR_038980.1	NA	NA	NA	NA	NA	inter
CUST_35575_PI429285431	1.8639982	A	3.0534804	P	0.438460200877372	0	lncRNA	36990-1_{1..399}	n342707|AF085993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5209|NULL|-1.4395300|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342707|AF085993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5209|NULL|-1.4395300|-1.0000000	chr17	 42553217	 42553615	+	NA	NA	NA	NA	GPATCH8	"hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30chr17:42543217-42563604"	NA	inner
CUST_10723_PI429285431	1.2803814	A	1.1616036	A	1.08581460920492	0	lncRNA	12260-1_{1..788}	lnc-SLC39A11-1:24	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC39A11-1:24	chr17	 70338247	 70339034	-	lnc-SLC39A11-1	lnc-SLC39A11-1:24	XLOC_012567	linc-ABCA5-5	NA	NA	NA	inter
CUST_38509_PI429285431	5.715561	P	4.231587	P	2.79718175469786	0	lncRNA	39520-2_{3001..4693}	n383077|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gty.2||2.8599000|-0.3875055	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383077|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gty.2||2.8599000|-0.3875055	chr17	 18417576	 18419268	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49422_PI429285431	0.9230332	A	1.0934279	A	0.888599540232233	0	lncRNA	53226-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00023271 range=chr5:175603837-175626435 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023271 range=chr5:175603837-175626435 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175603837	175606836	-	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00"	NA	inter
CUST_33828_PI429285431	6.0813713	P	4.316687	P	3.39799634332467	0	lncRNA	35376-1_{1..1454}	n340614|BC013423|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3076|NULL|0.4173500|-0.3066533	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340614|BC013423|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3076|NULL|0.4173500|-0.3066533	chr5	131525840	131527293	-	NA	NA	NA	NA	P4HA2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr5:131528303-131537202"	NA	inter
CUST_34451_PI429285431	0.9101713	A	0.89648473	A	1.00953194980391	0	lncRNA	35927-1_{1..2532}	n341326|AK125692|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3795|NULL|-1.1998300|-0.4121965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341326|AK125692|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3795|NULL|-1.1998300|-0.4121965	chr7	133899986	133902517	+	NA	NA	NA	NA	LRGUK	NA	chr7:133889986-133912516	inner
CUST_7280_PI429285431	1.0070636	A	0.898109	A	1.07844649365501	0	lncRNA	8158-1_{1..268}	"transcript_id ""ENST00000516227.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516227.1"" | genecode_v17"	chr10	112516214	112516481	+	ENSG00000252036.1	ENST00000516227.1	RN7SKP288	RN7SKP288-201	RBM20	NA	chr10:112506214-112526481	inner
CUST_31504_PI429285431	5.478237	P	4.4478693	P	2.04254476891049	0	lncRNA	33265-2_{3001..5918}	n337985|D87449|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|371|NULL|6.2108900|-0.3124598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337985|D87449|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|371|NULL|6.2108900|-0.3124598	chr1	 67468064	 67470981	-	NA	NA	NA	NA	SLC35D1	NA	chr1:67465015-67520080	inner
CUST_7458_PI429285431	0.9127817	A	0.9066135	A	1.00428462330248	0	lncRNA	9101-1_{1..1716}	lnc-FBN1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBN1-3:2	chr15	 48623300	 48625015	-	lnc-FBN1-3	lnc-FBN1-3:2	ENSG00000246076	ENST00000500769	DUT	"hg19_refFlat_DUT:range=chr15:48623713-486342755'pad=0,hg19_refFlat_DUT:range=chr15:48623713-486342755'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.40chr15:48623621-48634043"	NA	inner
CUST_40724_PI429285431	2.2243543	A	2.1421423	A	1.05863994762436	0	lncRNA	41458-1_{1..1880}	n410314|NR_037181_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037181_3||-0.9825640|-0.2369657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410314|NR_037181_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037181_3||-0.9825640|-0.2369657	chr6	   800156	   802035	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50"	NA	inter
CUST_1087_PI429285431	0.91982406	A	0.918859	A	1.00066915240071	0	lncRNA	1076-1_{1..362}	"transcript_id ""ENST00000413525.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413525.1"" | genecode_v17"	chr2	145324002	145324363	+	ENSG00000232606.1	ENST00000413525.1	AC010090.1	AC010090.1-001	NA	NA	NA	inter
CUST_484_PI429285431	2.9855907	A	3.1730638	P	0.878142453578884	0	lncRNA	475-1_{1..688}	"transcript_id ""ENST00000426899.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426899.1"" | genecode_v17"	chr1	174084438	174085125	-	ENSG00000227373.1	ENST00000426899.1	RP11-160H22.5	RP11-160H22.5-002	RABGAP1L	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80chr1:174128634-174138291"	NA	inter
CUST_34373_PI429285431	7.8334956	P	5.7176023	P	4.33458327492838	0	lncRNA	35859-1_{1..2686}	n341240|AK057669|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3708|NULL|0.1864570|-0.3752291	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341240|AK057669|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3708|NULL|0.1864570|-0.3752291	chr7	 44915899	 44918584	-	NA	NA	NA	NA	PURB	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30chr7:44915892-44924960"	NA	inner
CUST_36859_PI429285431	6.1429105	P	6.374009	P	0.851985923752434	0	lncRNA	38019-1_{1..578}	n345327|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_876|NULL|-1.5629300|-0.1503847	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345327|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_876|NULL|-1.5629300|-0.1503847	chr16	 11720927	 11721504	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21795_PI429285431	3.4672656	P	3.3133867	P	1.11255672851595	0	lncRNA	23405-1_{1..537}	lnc-GNAI1-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNAI1-2:10	chr7	 79088852	 79089388	+	lnc-GNAI1-2	lnc-GNAI1-2:10	ENSG00000234456.2	MAGI2-AS3	MAGI2	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-24.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-27.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00chr7:79078852-79082890"	NA	inter
CUST_11095_PI429285431	1.3162143	A	2.340009	A	0.491821019697329	0	lncRNA	12649-1_{1..1472}	lnc-WDR60-4:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR60-4:8	chr7	158814364	158815835	+	lnc-WDR60-4	lnc-WDR60-4:8	XLOC_006322	TCONS_00013663	VIPR2	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20chr7:158820866-158824447"	NA	inter
CUST_17447_PI429285431	5.41437	P	3.8063242	P	3.04838643364859	0	lncRNA	19170-1_{1..466}	lnc-THBS2-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THBS2-3:3	chr6	169562738	169563203	-	lnc-THBS2-3	lnc-THBS2-3:3	XLOC_005935	linc-DACT2-1	NA	NA	NA	inter
CUST_5990_PI429285431	3.0446913	A	3.82826	P	0.58092801097835	0	lncRNA	5916-2_{3001..4902}	"transcript_id ""ENST00000591283.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591283.1"" | genecode_v17"	chr17	 75557224	 75559125	+	ENSG00000267506.1	ENST00000591283.1	RP11-13K12.1	RP11-13K12.1-002	LOC100652922	NA	chr17:75548387-75550976	inter
CUST_47549_PI429285431	0.9159622	A	1.3547044	A	0.737777552700411	0	lncRNA	51558-1_{1..1719}	"gi|238908522|ref|NR_027760.1| Homo sapiens colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) (CSF2RA), transcript variant 11, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|238908522|ref|NR_027760.1| Homo sapiens colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) (CSF2RA), transcript variant 11, non-coding RNA"	ChrY	  1337693	  1339411	+	1438	NR_027760.1	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-13.50"	NA	inter
CUST_11762_PI429285431	3.4924157	P	4.4174623	P	0.526663506124556	0	lncRNA	13342-1_{1..722}	lnc-APBA1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-APBA1-3:1	chr9	 71921770	 71922491	-	lnc-APBA1-3	lnc-APBA1-3:1	XLOC_007724	linc-PRKACG-1	NA	NA	NA	inter
CUST_14413_PI429285431	1.0823332	A	1.0897464	A	0.994874740513948	0	lncRNA	16073-1_{1..1751}	lnc-C11orf92-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C11orf92-1:1	chr11	111068439	111070189	-	lnc-C11orf92-1	lnc-C11orf92-1:1	XLOC_009550	linc-ARHGAP20-3	NA	NA	NA	inter
LNCA_21_P0010627	0.9251246	A	0.90886194	A	1.01133619001946	0	lncRNA	TCONS_l2_00001297	NA	NA	NA	NA	XLOC_l2_000961	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000961), lincRNA [TCONS_l2_00001297]"	chr1:79561171-79561112	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_l2_00001297	TCONS_l2_00001297	chr1	 79561112	 79561171	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013857	0.9249055	A	0.90875345	A	1.01125865484767	0	lncRNA	U66048	NA	U66048	NA	NA	LOC100272228	uncharacterized LOC100272228	NA	THC2721474	NA	"BROAD Institute lincRNA (XLOC_l2_015641), lincRNA [TCONS_l2_00030763]"	chrX:149130958-149131017	hs|Xq28	Agilent_HUMAN_G3V2	U66048	U66048	chrX	149130958	149131017	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001301	4.7382636	P	5.135138	P	0.75950196372768	0	lncRNA	TCONS_00000951	NA	NA	NA	NA	XLOC_000208	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000208), lincRNA [TCONS_00000951]"	chr1:56345475-56345534	hs|1p32.2	Agilent_HUMAN_G3V2	TCONS_00000951	TCONS_00000951	chr1	 56345475	 56345534	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21401_PI429285431	3.6867728	P	3.7874348	P	0.932604955027375	0	lncRNA	23022-1_{1..366}	lnc-NUB1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUB1-1:4	chr7	151109053	151109418	+	lnc-NUB1-1	lnc-NUB1-1:4	ENSG00000243836.1	RP4-555L14.5	WDR86	NA	chr7:151099053-151107124	inter
CUST_42687_PI429285431	0.9433092	A	1.4327385	A	0.712306815760208	0	lncRNA	45608-1_{1..134}	ENST00000516019 ncrna:snoRNA chromosome:GRCh37:5:79602054:79602187:-1 gene:ENSG00000251828 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516019 ncrna:snoRNA chromosome:GRCh37:5:79602054:79602187:-1 gene:ENSG00000251828 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	 79602054	 79602187	-	ENSG00000251828	ENST00000516019	NA	NA	SPZ1	NA	chr5:79611441-79612187	inter
CUST_47430_PI429285431	4.8818507	P	5.701412	P	0.566614214582805	0	lncRNA	51466-1_{1..650}	"gi|213512664|ref|NR_024483.1| Homo sapiens CECR5 antisense RNA 1 (CECR5-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|213512664|ref|NR_024483.1| Homo sapiens CECR5 antisense RNA 1 (CECR5-AS1), transcript variant 1, non-coding RNA"	Chr22	 17640279	 17640928	+	100130717	NR_024483.1	NA	NA	NA	NA	NA	inter
CUST_22872_PI429285431	0.9070988	A	0.9001692	A	1.00481478671607	0	lncRNA	24449-1_{1..752}	lnc-FAM72B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-FAM72B-1:1	chr1	120914714	120915465	+	lnc-FAM72B-1	lnc-FAM72B-1:1	ENSG00000223345.2	HIST2H2BA	LOC100132314	NA	chr1:120904714-120905159	inter
CUST_29359_PI429285431	9.183327	P	10.288807	P	0.46474781903337	0	lncRNA	31111-1_{1..324}	n332617|AL137355|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000025643|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000025643|-0.9290210|-0.0773516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332617|AL137355|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000025643|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000025643|-0.9290210|-0.0773516	chr22	 38471399	 38471722	+	NA	NA	NA	NA	PICK1	NA	chr22:38461399-38471708	inner
CUST_26140_PI429285431	1.3007926	A	0.9979124	A	1.23360472821344	0	lncRNA	27651-1_{1..413}	lnc-ZNF750-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF750-1:1	chr17	 80753833	 80754245	-	lnc-ZNF750-1	lnc-ZNF750-1:1	ENSG00000263098.1	RP11-567O16.1	TBCD	NA	chr17:80743833-80763971	inner
CUST_43249_PI429285431	0.9125289	A	0.89937556	A	1.00915888880588	0	lncRNA	48066-1_{1..311}	ENST00000596293 havana:sense_intronic chromosome:GRCh37:19:56220176:56220486:1 gene:ENSG00000267865 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000596293 havana:sense_intronic chromosome:GRCh37:19:56220176:56220486:1 gene:ENSG00000267865 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 56220176	 56220486	+	ENSG00000267865	ENST00000596293	NA	NA	NLRP9	"hg19_refFlat_NLRP9:range=chr19:56220278-562497405'pad=0,hg19_refFlat_NLRP9:range=chr19:56220278-562497405'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10chr19:56218943-56230486"	NA	inner
LNCA_21_P0010997	11.119274	P	11.001224	P	1.08526698371754	0	lncRNA	XR_110520	XR_110520	XR_110520	NA	Hs.503862	LOC100506870	uncharacterized LOC100506870	NA	THC2749343	NA	"PREDICTED: Homo sapiens hypothetical LOC100506870, transcript variant 2 (LOC100506870), miscRNA [XR_110520]"	chr11:112162365-112162424	hs|11q23.1	Agilent_HUMAN_G3V2	XR_110520	XR_110520	chr11	112162365	112162424	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12108_PI429285431	1.3448112	A	1.0489776	A	1.22759408542696	0	lncRNA	13705-1_{1..952}	lnc-CAP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CAP2-1:1	chr6	 17358918	 17359869	+	lnc-CAP2-1	lnc-CAP2-1:1	XLOC_005188	linc-CAP2	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40"	NA	inter
CUST_16668_PI429285431	0.9007645	A	1.278894	A	0.769434540566526	0	lncRNA	18371-1_{1..1471}	lnc-CXCL12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CXCL12-1:1	chr10	 44789285	 44790755	-	lnc-CXCL12-1	lnc-CXCL12-1:1	XLOC_008795	linc-ZNF32-5	LOC100130539	"hg19_refFlat_LOC100130539:range=chr10:44788209-447893915'pad=0,hg19_refFlat_LOC100130539:range=chr10:44788209-447893915'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90chr10:44788204-44790179"	NA	inner
CUST_10662_PI429285431	1.1402037	A	1.6658456	A	0.694649969725829	0	lncRNA	12195-1_{1..237}	lnc-ZNF664-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF664-2:1	chr12	124574594	124574830	+	lnc-ZNF664-2	lnc-ZNF664-2:1	XLOC_009926	linc-FAM101A-3	ZNF664-FAM101A	NA	chr12:124564594-124584626	inner
CUST_30687_PI429285431	1.3957359	A	0.9195209	A	1.39108926562796	0	lncRNA	32469-1_{1..294}	n336176|X92776|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324578|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324578|0.7091540|-0.2718112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336176|X92776|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324578|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324578|0.7091540|-0.2718112	chr14	 22631556	 22631849	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36964_PI429285431	0.9003664	A	0.89748347	A	1.0020002927229	0	lncRNA	38110-1_{1..848}	n345426|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_975|NULL|-1.6073700|-0.1124270	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345426|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_975|NULL|-1.6073700|-0.1124270	chr1	 16492721	 16493568	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44797_PI429285431	3.6787164	P	3.33699	P	1.26727216732699	0	lncRNA	49332-2_{3001..6000}	"gi|373938457|ref|NR_028338.2| Homo sapiens TRAF3 interacting protein 2 (TRAF3IP2), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|373938457|ref|NR_028338.2| Homo sapiens TRAF3 interacting protein 2 (TRAF3IP2), transcript variant 1, non-coding RNA"	Chr6	111879581	111882580	-	10758	NR_028338.2	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.44;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30"	NA	inter
LNCA_19_P00322645	0.925382	A	0.9140464	A	1.0078881882888	0	lncRNA	XR_110237	XR_110237	XR_110237	NA	Hs.46519	LOC283588	uncharacterized LOC283588	NA	THC2477609	NA	"PREDICTED: Homo sapiens hypothetical LOC283588 (LOC283588), miscRNA [XR_110237]"	chr14:91314296-91314237	hs|14q32.11	Agilent_HUMAN_G3V2	XR_110237	XR_110237	chr14	 91314237	 91314296	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33147_PI429285431	0.9264945	A	0.9093628	A	1.01194557477572	0	lncRNA	34743-1_{1..1400}	n339837|BC063708|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2285|NULL|2.7236800|-0.1411400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339837|BC063708|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2285|NULL|2.7236800|-0.1411400	chr4	  7432020	  7433419	-	NA	NA	NA	NA	SORCS2	NA	chr4:7422020-7443304	inner
CUST_4902_PI429285431	3.2552412	P	3.9000244	P	0.639588897196768	0	lncRNA	4844-1_{1..871}	"transcript_id ""ENST00000554058.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554058.1"" | genecode_v17"	chr14	 77248478	 77249348	-	ENSG00000258301.2	ENST00000554058.1	RP11-488C13.5	RP11-488C13.5-002	VASH1	NA	chr14:77238478-77249363	inner
CUST_9253_PI429285431	0.92133945	A	0.9159227	A	1.00376166234938	0	lncRNA	10762-1_{1..1935}	lnc-TUBGCP3-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TUBGCP3-4:2	chr13	112926566	112928500	-	lnc-TUBGCP3-4	lnc-TUBGCP3-4:2	ENSG00000251004	XLOC_010732	NA	NA	NA	inter
CUST_51090_PI429285431	5.15334	P	4.5894194	P	1.47828107052631	0	lncRNA	54728-1_{1..269}	hg19_lincRNAsTranscripts_TCONS_l2_00006877 range=chr13:60849731-60851370 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006877 range=chr13:60849731-60851370 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 60849731	 60849999	+	NA	NA	NA	NA	TDRD3	NA	chr13:60843438-60861370	inter
LNCA_21_P0002092	0.92830145	A	0.9182706	A	1.00697708261209	0	lncRNA	ENST00000457110	NA	NA	NA	NA	XLOC_002289	NA	ENST00000457110	NA	NA	"BROAD Institute lincRNA (XLOC_002289), lincRNA [TCONS_00003385]"	chr2:118515229-118515170	hs|2q14.1	Agilent_HUMAN_G3V2	ENST00000457110	ENST00000457110	chr2	118515170	118515229	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16279_PI429285431	3.3846111	P	3.4972734	P	0.924879744746725	0	lncRNA	17984-1_{1..561}	lnc-NTSR2-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTSR2-5:5	chr2	 13146996	 13147556	-	lnc-NTSR2-5	lnc-NTSR2-5:5	XLOC_001992	linc-NTSR2-2	NA	NA	NA	inter
CUST_8761_PI429285431	1.0465945	A	0.9190102	A	1.09246291008102	0	lncRNA	10304-1_{1..1117}	lnc-PTCH1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PTCH1-3:4	chr9	 98637262	 98638378	-	lnc-PTCH1-3	lnc-PTCH1-3:4	ENSG00000175611	C9orf130	C9orf102	NA	chr9:98637900-98647762	inter
CUST_34183_PI429285431	3.4844437	P	3.9563227	P	0.721024906136303	0	lncRNA	35699-1_{1..340}	n341032|X64985|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3498|NULL|2.8418100|-0.1485951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341032|X64985|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3498|NULL|2.8418100|-0.1485951	chr11	 55277581	 55277920	+	NA	NA	NA	NA	OR4C15	NA	chr11:55267581-55287922	inter
CUST_50479_PI429285431	4.880436	P	5.9754596	P	0.468128465881152	0	lncRNA	54178-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00030277 range=chrX:100699084-100750930 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030277 range=chrX:100699084-100750930 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	100702084	100705083	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_46980_PI429285431	1.4436841	A	1.6139746	A	0.88866372248373	0	lncRNA	51082-1_{1..2986}	"gi|148229010|ref|NR_003558.1| Homo sapiens WW domain binding protein 11 pseudogene 1 (WBP11P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|148229010|ref|NR_003558.1| Homo sapiens WW domain binding protein 11 pseudogene 1 (WBP11P1), non-coding RNA"	NA	NA	NA	NA	NA	NR_003558.1	NA	NA	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50"	NA	Unknown
CUST_8759_PI429285431	6.101387	P	6.139992	P	0.973595901545282	0	lncRNA	10302-1_{1..493}	lnc-ANKRD10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ANKRD10-2:1	chr13	111768703	111769195	-	lnc-ANKRD10-2	lnc-ANKRD10-2:1	ENSG00000235875	ARHGEF7-AS2	ARHGEF7	"hg19_refFlat_ARHGEF7:range=chr13:111767874-1119446795'pad=0,hg19_refFlat_ARHGEF7:range=chr13:111767874-1119446795'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10chr13:111767624-111778922"	NA	inner
CUST_47044_PI429285431	2.7012608	A	2.7918713	A	0.939125258906172	0	lncRNA	51133-1_{1..784}	"gi|397139687|ref|XR_158942.1| PREDICTED: Homo sapiens uncharacterized LOC100996288 (LOC100996288), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139687|ref|XR_158942.1| PREDICTED: Homo sapiens uncharacterized LOC100996288 (LOC100996288), misc_RNA"	Chr19	  9944755	  9945538	-	100996288	XR_158942.1	NA	NA	NA	NA	NA	inter
CUST_40161_PI429285431	0.9235656	A	0.9087624	A	1.01031361882639	0	lncRNA	40997-1_{1..1160}	n407853|NR_027408|lncRNA|Homosapiens||RefGeneNoncode|NR_027408||3.1855200|-0.3197802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407853|NR_027408|lncRNA|Homosapiens||RefGeneNoncode|NR_027408||3.1855200|-0.3197802	chr17	 58179120	 58180279	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4081_PI429285431	0.9071182	A	0.9015636	A	1.00385757669859	0	lncRNA	4042-1_{1..818}	"transcript_id ""ENST00000535704.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535704.1"" | genecode_v17"	chr11	115234348	115235165	+	ENSG00000255580.1	ENST00000535704.1	AP000462.2	AP000462.2-001	CADM1	NA	chr11:115224348-115258649	inner
CUST_16818_PI429285431	2.2768915	A	3.04505	A	0.587166473706585	0	lncRNA	18526-1_{1..378}	lnc-RP11-973F15.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-973F15.1.1-3:1	chr8	123792412	123792789	-	lnc-RP11-973F15.1.1-3	lnc-RP11-973F15.1.1-3:1	XLOC_007200	linc-HAS2-2	ZHX2	NA	chr8:123782412-123802481	inter
CUST_39234_PI429285431	0.9273019	A	1.1442838	A	0.860363424632254	0	lncRNA	40206-1_{1..498}	n386062|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010amc.1||1.4228900|-0.3292543	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386062|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010amc.1||1.4228900|-0.3292543	chr14	 27791205	 27791702	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19670_PI429285431	0.91834974	A	0.9265743	A	0.994315388324242	0	lncRNA	21326-1_{1..535}	lnc-MYNN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYNN-1:1	chr3	169194674	169195208	+	lnc-MYNN-1	lnc-MYNN-1:1	ENSG00000241479.1	RP11-641D5.2	MECOM	NA	chr3:169184674-169204840	inner
LNCA_21_P0009521	4.117145	P	4.9340477	P	0.567659334555802	0	lncRNA	TCONS_00026410	NA	NA	NA	NA	XLOC_012754	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012754), lincRNA [TCONS_00026410]"	chr18:9318734-9318675	hs|18p11.22	Agilent_HUMAN_G3V2	TCONS_00026410	TCONS_00026410	chr18	  9318675	  9318734	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14574_PI429285431	0.9596077	A	1.1389248	A	0.883120922843975	0	lncRNA	16240-1_{1..322}	lnc-SKAP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SKAP2-1:1	chr7	 26657866	 26658187	-	lnc-SKAP2-1	lnc-SKAP2-1:1	XLOC_006389	linc-HNRNPA2B1-2	NA	NA	NA	inter
CUST_15444_PI429285431	0.92743933	A	0.9281447	A	0.99951119427771	0	lncRNA	17132-1_{1..453}	lnc-B3GNT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-B3GNT2-1:1	chr2	 62690974	 62691426	+	lnc-B3GNT2-1	lnc-B3GNT2-1:1	XLOC_001493	linc-EHBP1	NA	NA	NA	inter
CUST_25848_PI429285431	1.1231903	A	1.6030809	A	0.717031994698796	0	lncRNA	27368-1_{1..461}	lnc-CCNJL-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCNJL-1:2	chr5	159625846	159626306	-	lnc-CCNJL-1	lnc-CCNJL-1:2	ENSG00000247699.2	CTB-127C13.1	FABP6	NA	chr5:159615846-159636102	inner
CUST_2725_PI429285431	3.803765	P	3.8345795	P	0.978867503917179	0	lncRNA	2710-1_{1..588}	"transcript_id ""ENST00000433388.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433388.1"" | genecode_v17"	chr6	169770093	169770680	-	ENSG00000226194.1	ENST00000433388.1	RP1-137D17.1	RP1-137D17.1-002	NA	NA	NA	inter
LNCA_21_P0010505	1.0053811	A	1.8521991	A	0.556009716509684	0	lncRNA	TCONS_l2_00000004	NA	NA	NA	NA	XLOC_l2_000010	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000010), lincRNA [TCONS_l2_00000004]"	chr1:740451-740510	hs|1p36.33	Agilent_HUMAN_G3V2	TCONS_l2_00000004	TCONS_l2_00000004	chr1	   740451	   740510	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_992_PI429285431	0.926847	A	1.8552773	A	0.525429715856205	0	lncRNA	981-1_{1..578}	"transcript_id ""ENST00000414442.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000414442.1"" | genecode_v17"	chr2	105050824	105051401	+	ENSG00000235597.1	ENST00000414442.1	AC013402.2	AC013402.2-002	NA	NA	NA	inter
LNCA_21_P0001108	1.0133747	A	1.680377	A	0.629813985899185	0	lncRNA	ENST00000424084	NA	NA	NA	NA	XLOC_000745	NA	ENST00000424084	NA	NA	"BROAD Institute lincRNA (XLOC_000745), lincRNA [TCONS_00000488]"	chr1:25430413-25430354	hs|1p36.11	Agilent_HUMAN_G3V2	ENST00000424084	ENST00000424084	chr1	 25430354	 25430413	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15886_PI429285431	1.6235316	A	0.939236	A	1.60691720797288	0	lncRNA	17577-1_{1..734}	lnc-GP9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GP9-1:2	chr3	128775403	128776136	+	lnc-GP9-1	lnc-GP9-1:2	XLOC_002811	linc-GP9	GP9	NA	chr3:128765403-128781253	inter
LNCA_21_P0010029	6.3992558	P	6.36652	P	1.02295012025154	0	lncRNA	TCONS_00028355	NA	NA	NA	NA	XLOC_013708	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013708), lincRNA [TCONS_00028355]"	chr20:25730120-25730061	hs|20p11.1	Agilent_HUMAN_G3V2	TCONS_00028355	TCONS_00028355	chr20	 25730061	 25730120	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43328_PI429285431	0.91270745	A	0.9078048	A	1.00340403864974	0	lncRNA	48157-3_{6001..9000}	ENST00000454051 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:29969382:29992343:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>ENST00000454051 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:29969382:29992343:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	chrHSCHR6_MHC_QBL	 29975382	 29978381	-	ENSG00000235814	ENST00000454051	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80"	NA	Unknown
CUST_1613_PI429285431	1.0743744	A	0.9098899	A	1.12076553747671	0	lncRNA	1599-1_{1..566}	"transcript_id ""ENST00000426616.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426616.1"" | genecode_v17"	chr3	193698403	193698968	+	ENSG00000238043.1	ENST00000426616.1	RP11-699L21.2	RP11-699L21.2-001	NA	NA	NA	inter
CUST_18724_PI429285431	1.0138776	A	1.1068511	A	0.937588318296473	0	lncRNA	20422-1_{1..2504}	lnc-TCL1B-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCL1B-1:13	chr14	 96134463	 96136966	+	lnc-TCL1B-1	lnc-TCL1B-1:13	ENSG00000187621	TCL6	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60"	NA	inter
CUST_15412_PI429285431	2.7951097	A	2.9079044	A	0.924794869942324	0	lncRNA	17098-1_{1..540}	lnc-C9orf170-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf170-1:7	chr9	 89565782	 89566321	+	lnc-C9orf170-1	lnc-C9orf170-1:7	XLOC_007438	linc-C9orf170-1	GAS1	NA	chr9:89559277-89562104	inter
LNCA_21_P0005273	1.0292659	A	0.98826015	A	1.02883080838966	0	lncRNA	ENST00000449903	XR_108717	XR_108717	NA	Hs.571393	XLOC_006316	NA	ENST00000449903	THC2661976	NA	"PREDICTED: Homo sapiens hypothetical LOC100506534 (LOC100506534), miscRNA [XR_108717]"	chr7:157296212-157296271	hs|7q36.3	Agilent_HUMAN_G3V2	ENST00000449903	ENST00000449903	chr7	157296212	157296271	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24925_PI429285431	2.064176	A	2.408759	A	0.787535574827237	0	lncRNA	26465-2_{3001..3362}	lnc-C6orf221-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C6orf221-2:3	chr6	 74003256	 74003617	+	lnc-C6orf221-2	lnc-C6orf221-2:3	ENSG00000229852.2	RP11-398K22.12	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.20"	NA	inter
CUST_20343_PI429285431	1.2145256	A	0.92962825	A	1.2183235749706	0	lncRNA	21985-1_{1..439}	lnc-C8orf74-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C8orf74-2:1	chr8	 10703728	 10704166	+	lnc-C8orf74-2	lnc-C8orf74-2:1	ENSG00000253695.1	RP11-177H2.2	PINX1	NA	chr8:10693728-10697299	inter
CUST_36307_PI429285431	7.6167083	P	7.4210367	P	1.14525717394971	0	lncRNA	37539-1_{1..3000}	n344834|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_383|NULL|-1.3305200|-0.3808684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344834|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_383|NULL|-1.3305200|-0.3808684	chr5	 87566340	 87569339	-	NA	NA	NA	NA	TMEM161B	NA	chr5:87556340-87564665	inter
CUST_49937_PI429285431	2.477928	A	4.3908157	P	0.265560467159855	0	lncRNA	53687-1_{1..239}	hg19_lincRNAsTranscripts_TCONS_l2_00026847 range=chr7:112594808-112626632 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026847 range=chr7:112594808-112626632 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	112594808	112595046	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5074_PI429285431	7.663785	P	7.108226	P	1.46973800128111	0	lncRNA	5014-1_{1..166}	"transcript_id ""ENST00000420153.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420153.1"" | genecode_v17"	chr14	106066241	106066406	-	ENSG00000227468.4	ENST00000420153.1	AL928742.12	AL928742.12-002	NA	NA	NA	inter
CUST_29420_PI429285431	5.519589	P	5.436277	P	1.05944742804618	0	lncRNA	31176-1_{1..410}	n332789|AF043469|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063744|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063744|1.7017600|-0.0724672	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332789|AF043469|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063744|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063744|1.7017600|-0.0724672	chr12	 57619276	 57619685	+	NA	NA	NA	NA	NDUFA4L2	NA	chr12:57628686-57629686	inner
CUST_40603_PI429285431	0.9723474	A	0.95981055	A	1.00872774886324	0	lncRNA	41349-1_{1..2182}	n410084|NR_036523|lncRNA|Homosapiens||RefGeneNoncode|NR_036523||-1.3100500|-0.3636800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410084|NR_036523|lncRNA|Homosapiens||RefGeneNoncode|NR_036523||-1.3100500|-0.3636800	chr6	  2661006	  2663187	+	NA	NA	NA	NA	MYLK4	NA	chr6:2663863-2686580	inner
CUST_6743_PI429285431	1.6241713	A	1.0657907	A	1.47261530424716	0	lncRNA	6691-1_{1..593}	"transcript_id ""ENST00000424662.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424662.1"" | genecode_v17"	chr20	 57927250	 57927842	-	ENSG00000225129.1	ENST00000424662.1	RP4-614C15.2	RP4-614C15.2-001	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50"	NA	inter
CUST_17202_PI429285431	3.1414804	A	2.6950545	A	1.36266024808661	0	lncRNA	18916-1_{1..3000}	lnc-TMED5-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TMED5-1:7	chr1	 93811281	 93814280	-	lnc-TMED5-1	lnc-TMED5-1:7	XLOC_000918	linc-TMED5	DR1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr1:93811478-93821368"	NA	inter
CUST_36070_PI429285431	1.5232215	A	1.374348	A	1.10870342476731	0	lncRNA	37376-5_{12001..14567}	n344659|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_208|NULL|-1.3129200|-0.4214645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n344659|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_208|NULL|-1.3129200|-0.4214645	chr1	 23619825	 23622391	-	NA	NA	NA	NA	HNRNPR	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20chr1:23636276-23646128"	NA	inter
CUST_38023_PI429285431	0.89984953	A	1.2266057	A	0.797327221488715	0	lncRNA	39108-2_{3001..3592}	n377596|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029965||-0.1091590|-0.2680636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377596|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029965||-0.1091590|-0.2680636	chr6	  4128588	  4129179	+	NA	NA	NA	NA	C6orf201	"hg19_refFlat_ECI2:range=chr6:4116108-41357945'pad=0,hg19_refFlat_ECI2:range=chr6:4116108-41357945'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ECI2:range=chr6:4116108-41339055'pad=0,hg19_refFlat_ECI2:range=chr6:4116108-41339055'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr6:4115588-4130999"	NA	inner
CUST_23263_PI429285431	0.91476184	A	1.1177969	A	0.868721073460308	0	lncRNA	24835-1_{1..498}	lnc-SPG11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPG11-2:1	chr15	 44809449	 44809946	-	lnc-SPG11-2	lnc-SPG11-2:1	ENSG00000259563.1	CTD-2329K10.1	CTDSPL2	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-30.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20chr15:44799449-44819430"	NA	inner
CUST_25373_PI429285431	7.204217	P	6.6301866	P	1.48867662374498	0	lncRNA	26904-1_{1..510}	lnc-IL15RA-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL15RA-1:3	chr10	  5987618	  5988127	-	lnc-IL15RA-1	lnc-IL15RA-1:3	ENSG00000232807.1	RP11-536K7.3	FBXO18	NA	chr10:5977618-5979556	inter
CUST_2251_PI429285431	1.0293117	A	1.2030131	A	0.886565175924189	0	lncRNA	2243-1_{1..570}	"transcript_id ""ENST00000512941.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512941.1"" | genecode_v17"	chr5	 89240727	 89241296	+	ENSG00000249265.1	ENST00000512941.1	AC113167.2	AC113167.2-001	NA	NA	NA	inter
LNCA_21_P0005178	5.8818035	P	6.024846	P	0.905607304560999	0	lncRNA	TCONS_00012805	NA	NA	NA	NA	XLOC_005859	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005859), lincRNA [TCONS_00012805]"	chr6:140415592-140415533	hs|6q24.1	Agilent_HUMAN_G3V2	TCONS_00012805	TCONS_00012805	chr6	140415533	140415592	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27443_PI429285431	2.21472	A	3.6093369	P	0.380345673673654	0	lncRNA	29012-1_{1..484}	n324618|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039657|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039657|-1.2732500|-0.3289782	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324618|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039657|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039657|-1.2732500|-0.3289782	chr6	  2862126	  2862609	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36395_PI429285431	0.91457695	A	0.9240293	A	0.993469546947789	0	lncRNA	37613-1_{1..1359}	n344912|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_461|NULL|-1.2661200|-0.3292788	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344912|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_461|NULL|-1.2661200|-0.3292788	chr6	 80248444	 80249802	+	NA	NA	NA	NA	LCA5	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30chr6:80238444-80247147"	NA	inter
CUST_11206_PI429285431	1.1682361	A	1.7272985	A	0.678743132046478	0	lncRNA	12764-1_{1..3000}	lnc-KCNJ12-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-KCNJ12-5:1	chr17	 21544414	 21547413	+	lnc-KCNJ12-5	lnc-KCNJ12-5:1	XLOC_012147	linc-MTRNR2L1-2	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70"	NA	inter
CUST_39626_PI429285431	0.9203397	A	0.91119903	A	1.00635594346435	0	lncRNA	40565-1_{1..649}	n387907|NULL|lncRNA|Homosapiens||H-invitationalv7.5|HIT000384026||4.9689100|-0.2194484	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387907|NULL|lncRNA|Homosapiens||H-invitationalv7.5|HIT000384026||4.9689100|-0.2194484	chr11	  6867118	  6867766	+	NA	NA	NA	NA	OR10A5	NA	chr11:6866914-6867867	inner
CUST_16193_PI429285431	0.9085757	A	0.9035621	A	1.00348120808323	0	lncRNA	17898-1_{1..376}	lnc-ATXN7L3B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATXN7L3B-2:2	chr12	 74312978	 74313353	+	lnc-ATXN7L3B-2	lnc-ATXN7L3B-2:2	XLOC_009804	linc-ATXN7L3B-1	NA	NA	NA	inter
CUST_16843_PI429285431	4.6139293	P	4.736069	P	0.918823907007185	0	lncRNA	18551-1_{1..279}	lnc-ZNF492-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF492-1:2	chr19	 22716182	 22716460	+	lnc-ZNF492-1	lnc-ZNF492-1:2	XLOC_013014	linc-ZNF492-1	NA	NA	NA	inter
CUST_390_PI429201921	6.080978	P	6.0055356	P	1.05368409686966	0	lncRNA	246-4_{9001..9417}	TC03003065.hg.1	 TCONS_l2_00019491-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125626357-125633319 // chr3 // 100 // 100 // 0 // --- // 0///TCONS_l2_00019490-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125623901-125627019 // chr3 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00019493-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125627284-125627714 // chr3 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00020180-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125626847-125629115 // chr3 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00019492-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125626797-125627926 // chr3 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr3:-:125623901-125627019	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00019490-XLOC_l2_010330	linc-OSBPL11-4	chr3	125623901	125627019	-	NA	NA	NA	NA	NFIA	NA	chr1:61704617-61729182	Unknown
CUST_35278_PI429285431	2.3608575	A	2.447741	A	0.941554493547088	0	lncRNA	36679-1_{1..2108}	n342290|BC039335|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4782|NULL|-1.1732800|-0.2664761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342290|BC039335|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4782|NULL|-1.1732800|-0.2664761	chr15	 98419522	 98421629	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46426_PI429285431	7.247392	P	7.2387795	P	1.00598758444213	0	lncRNA	50638-1_{1..2585}	"gi|397139561|ref|XR_109206.2| PREDICTED: Homo sapiens uncharacterized LOC100130111 (LOC100130111), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139561|ref|XR_109206.2| PREDICTED: Homo sapiens uncharacterized LOC100130111 (LOC100130111), misc_RNA"	Chr15	 29967193	 29969777	+	100130111	XR_109206.3	NA	NA	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_22156_PI429285431	0.96448314	A	0.92319393	A	1.02903297241216	0	lncRNA	23758-1_{1..635}	lnc-SAP30-5:35	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:35	chr4	174512224	174512858	+	lnc-SAP30-5	lnc-SAP30-5:35	ENSG00000237125.3	RP11-471J12.1	NA	NA	NA	inter
CUST_15183_PI429285431	1.2065438	A	2.3850503	A	0.44180862854851	0	lncRNA	16848-1_{1..249}	lnc-TRIM27-15:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIM27-15:1	chr6	 28757262	 28757510	-	lnc-TRIM27-15	lnc-TRIM27-15:1	XLOC_005664	linc-SCAND3-2	NA	NA	NA	inter
LNCA_21_P0008248	0.98141265	A	0.9261395	A	1.03905581238775	0	lncRNA	ENST00000420210	NA	NA	NA	NA	XLOC_010556	NA	ENST00000420210	THC2502757	NA	"BROAD Institute lincRNA (XLOC_010556), lincRNA [TCONS_00022246]"	chr13:30915727-30915668	hs|13q12.3	Agilent_HUMAN_G3V2	ENST00000420210	ENST00000420210	chr13	 30915668	 30915727	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10550_PI429285431	2.3411794	A	2.3688538	A	0.981000379728581	0	lncRNA	12080-1_{1..733}	lnc-CHMP2B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHMP2B-2:1	chr3	 86771631	 86772363	+	lnc-CHMP2B-2	lnc-CHMP2B-2:1	XLOC_002725	linc-CHMP2B-2	NA	NA	NA	inter
CUST_16679_PI429285431	0.93657017	A	0.93828726	A	0.998810511910186	0	lncRNA	18384-1_{1..932}	lnc-ZC3H12B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZC3H12B-2:1	chrX	 64311000	 64311931	+	lnc-ZC3H12B-2	lnc-ZC3H12B-2:1	XLOC_008000	linc-ZC3H12B-2	NA	NA	NA	inter
CUST_4100_PI429285431	2.1779704	A	2.556104	A	0.769432353910965	0	lncRNA	4061-1_{1..464}	"transcript_id ""ENST00000524708.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524708.1"" | genecode_v17"	chr11	119859473	119859936	-	ENSG00000254863.1	ENST00000524708.1	RP11-831A10.2	RP11-831A10.2-002	NA	NA	NA	inter
CUST_18550_PI429285431	6.5503254	P	6.3168497	P	1.17566391631347	0	lncRNA	20261-1_{1..1571}	lnc-AL669831.1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AL669831.1-5:2	chr1	   788771	   790341	+	lnc-AL669831.1-5	lnc-AL669831.1-5:2	ENSG00000228794	RP11-206L10.11	NA	NA	NA	inter
CUST_43460_PI429285431	0.92616373	A	1.4484288	A	0.696277799704496	0	lncRNA	48264-1_{1..512}	"gi|336285450|ref|NR_038828.1| Homo sapiens KIAA0494 antisense RNA 1 (KIAA0494-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336285450|ref|NR_038828.1| Homo sapiens KIAA0494 antisense RNA 1 (KIAA0494-AS1), transcript variant 2, non-coding RNA"	Chr1	 47139708	 47140219	+	100130197	NR_038828.1	NA	NA	NA	"hg19_refFlat_EFCAB14:range=chr1:47144133-471837595'pad=0,hg19_refFlat_EFCAB14:range=chr1:47144133-471837595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
CUST_7764_PI429285431	8.553067	P	7.4093914	P	2.20943210758576	0	lncRNA	9391-1_{1..1487}	lnc-WDR74-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-WDR74-1:4	chr11	 62622896	 62624382	-	lnc-WDR74-1	lnc-WDR74-1:4	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62633339	inter
CUST_4699_PI429285431	0.90153986	A	0.89634657	A	1.00360620107408	0	lncRNA	4646-1_{1..657}	"transcript_id ""ENST00000413637.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413637.1"" | genecode_v17"	chr13	112976881	112977537	-	ENSG00000223626.1	ENST00000413637.1	RP11-315H15.1	RP11-315H15.1-001	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80"	NA	inter
CUST_29073_PI429285431	0.9090662	A	0.9090273	A	1.00002696378884	0	lncRNA	30805-1_{1..358}	n326567|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026417|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026417|-1.0671600|-0.4601048	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326567|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026417|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026417|-1.0671600|-0.4601048	chr1	 73544504	 73544861	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10144_PI429285431	1.0623062	A	1.5071521	A	0.734662784704714	0	lncRNA	11666-1_{1..338}	lnc-COG6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COG6-2:1	chr13	 40638247	 40638584	+	lnc-COG6-2	lnc-COG6-2:1	XLOC_010355	linc-SLC25A15-3	NA	NA	NA	inter
CUST_51165_PI429285431	0.92983043	A	0.9538885	A	0.983462487825127	0	lncRNA	54787-1_{1..247}	hg19_lincRNAsTranscripts_TCONS_l2_00007728 range=chr14:53635868-53636543 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007728 range=chr14:53635868-53636543 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 53635868	 53636114	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9638_PI429285431	1.0084332	A	0.92462635	A	1.0598108849571	0	lncRNA	11156-1_{1..627}	lnc-C14orf23-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C14orf23-2:2	chr14	 29532087	 29532713	+	lnc-C14orf23-2	lnc-C14orf23-2:2	XLOC_010782	linc-G2E3-4	NA	NA	NA	inter
CUST_962_PI429285431	0.95962286	A	2.2810729	A	0.400132566921565	0	lncRNA	951-1_{1..576}	"transcript_id ""ENST00000593408.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593408.1"" | genecode_v17"	chr2	 98081851	 98082426	-	ENSG00000230606.5	ENST00000593408.1	AC159540.1	AC159540.1-010	NA	NA	NA	inter
CUST_38668_PI429285431	1.1241279	A	0.92130864	A	1.15094529253505	0	lncRNA	39669-1_{1..3000}	n383959|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yiy.3||1.0274200|-0.3954883	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383959|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yiy.3||1.0274200|-0.3954883	chr21	 14410486	 14413485	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80"	NA	inter
CUST_8279_PI429285431	0.90502125	A	1.4265528	A	0.696631903334995	0	lncRNA	9863-1_{1..724}	lnc-WRNIP1-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WRNIP1-2:12	chr6	  2263835	  2264558	+	lnc-WRNIP1-2	lnc-WRNIP1-2:12	ENSG00000250903	RP1-80B9.2	NA	NA	NA	inter
CUST_6060_PI429285431	15.845888	P	15.493987	P	1.27624118814888	0	lncRNA	5986-1_{1..977}	"transcript_id ""ENST00000579933.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579933.1"" | genecode_v17"	chr18	  5232875	  5233851	-	ENSG00000265091.1	ENST00000579933.1	RP11-835E18.5	RP11-835E18.5-001	NA	NA	NA	inter
CUST_392_PI429201921	6.4568377	P	6.3674674	P	1.06390571308452	0	lncRNA	247-2_{3001..6000}	TC01004143.hg.1	TCONS_l2_00000051-XLOC_l2_000033 // Broad TUCP // linc-C1orf93 chr1:+:2499253-2508846 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:2499253-2508846	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00000051-XLOC_l2_000033	linc-C1orf93	chr1	  2499253	  2508846	+	NA	NA	NA	NA	NFIA	NA	chr1:61704666-61729182	Unknown
LNCA_21_P0007620	2.5923066	A	2.004605	A	1.50285060363384	0	lncRNA	TCONS_00020550	NA	NA	NA	NA	XLOC_009863	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009863), lincRNA [TCONS_00020550]"	chr12:104762711-104762770	hs|12q23.3	Agilent_HUMAN_G3V2	TCONS_00020550	TCONS_00020550	chr12	104762711	104762770	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38310_PI429285431	1.3762627	A	0.91167855	A	1.37991954080562	0	lncRNA	39360-1_{1..2197}	n381995|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uqd.2||-1.0193400|-0.2504165	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381995|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uqd.2||-1.0193400|-0.2504165	chr13	 25749015	 25751211	-	NA	NA	NA	NA	FAM123A	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10chr13:25742660-25745857"	NA	inter
CUST_26103_PI429285431	0.97133064	A	0.92015517	A	1.03610877421764	0	lncRNA	27615-1_{1..416}	lnc-KCNG4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNG4-2:1	chr16	 84330503	 84330918	-	lnc-KCNG4-2	lnc-KCNG4-2:1	ENSG00000260530.1	RP11-558A11.2	WFDC1	NA	chr16:84328401-84340591	inner
CUST_26908_PI429285431	0.9286227	A	1.4503332	A	0.696545499386541	0	lncRNA	28426-1_{1..751}	n323984|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053806|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053806|-0.8090800|-0.2123480	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323984|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053806|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053806|-0.8090800|-0.2123480	chr9	119264392	119265142	-	NA	NA	NA	NA	ASTN2	NA	chr9:119254392-119278359	inner
CUST_34184_PI429285431	0.92069125	A	0.9173052	A	1.00234978744407	0	lncRNA	35700-1_{1..2730}	n341033|AL832845|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3499|NULL|-1.0022100|-0.3142091	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341033|AL832845|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3499|NULL|-1.0022100|-0.3142091	chr11	 56956460	 56959189	+	NA	NA	NA	NA	LRRC55	NA	chr11:56949221-56959188	inner
CUST_26386_PI429285431	0.9272319	A	1.1207572	A	0.874466304818717	0	lncRNA	27892-1_{1..583}	lnc-C2orf42-3:27	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:27	chr2	 70313256	 70313838	-	lnc-C2orf42-3	lnc-C2orf42-3:27	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_27158_PI429285431	0.9270915	A	0.9133763	A	1.00955198396615	0	lncRNA	28694-1_{1..346}	n324282|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043252|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043252|-1.2089400|-0.1744358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324282|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043252|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043252|-1.2089400|-0.1744358	chr6	170427951	170428296	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24238_PI429285431	3.012363	A	3.4906855	P	0.717811777755612	0	lncRNA	25789-1_{1..468}	lnc-AC114546.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC114546.1-2:1	chr15	 35302946	 35303413	+	lnc-AC114546.1-2	lnc-AC114546.1-2:1	ENSG00000259587.1	RP11-463I20.2	NA	NA	NA	inter
CUST_35711_PI429285431	0.90507734	A	1.0928108	A	0.877983991441347	0	lncRNA	37131-1_{1..2116}	n342878|BC031239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5383|NULL|-0.9214890|-0.3334707	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342878|BC031239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5383|NULL|-0.9214890|-0.3334707	chr9	129032402	129034517	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19336_PI429285431	1.7030833	A	2.4641733	A	0.59005036126295	0	lncRNA	21002-1_{1..470}	lnc-ITGB3BP-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITGB3BP-1:5	chr1	 63787038	 63787507	-	lnc-ITGB3BP-1	lnc-ITGB3BP-1:5	ENSG00000230798.1	RP4-792G4.2	FOXD3	NA	chr1:63788730-63790797	inter
CUST_19622_PI429285431	10.875204	P	11.260081	P	0.765844289429522	0	lncRNA	21278-1_{1..504}	lnc-AC135050.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC135050.1-1:1	chr16	 31080152	 31080655	+	lnc-AC135050.1-1	lnc-AC135050.1-1:1	ENSG00000261124.1	AC135050.5	ZNF668	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30chr16:31072164-31085641"	NA	inner
CUST_49918_PI429285431	7.186559	P	6.881993	P	1.23504704712749	0	lncRNA	53668-1_{1..1167}	hg19_lincRNAsTranscripts_TCONS_l2_00026779 range=chr7:97595785-97599695 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026779 range=chr7:97595785-97599695 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 97595785	 97596951	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19102_PI429285431	9.541169	P	7.355399	P	4.54969552368583	0	lncRNA	20791-1_{1..274}	lnc-FANK1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FANK1-2:1	NA	NA	      273	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13790_PI429285431	7.0822964	P	7.4881186	P	0.75480600200409	0	lncRNA	15432-1_{1..564}	lnc-AL450307.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL450307.1-1:1	chr10	133665432	133665995	-	lnc-AL450307.1-1	lnc-AL450307.1-1:1	XLOC_008999	linc-TCERG1L-4	NA	NA	NA	inter
CUST_25767_PI429285431	3.310338	P	3.3720574	P	0.95812155196364	0	lncRNA	27292-1_{1..1205}	lnc-AC009113.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC009113.1-2:1	chr16	 89390644	 89391848	+	lnc-AC009113.1-2	lnc-AC009113.1-2:1	ENSG00000261253.1	AC137932.6	LOC100287036	"hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0,hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30chr16:89387541-89391518"	NA	inner
CUST_32904_PI429285431	0.92452836	A	1.8288211	A	0.534294569876095	0	lncRNA	34529-1_{1..1961}	n339573|AK026713|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2017|NULL|-1.0374300|-0.2891481	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339573|AK026713|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2017|NULL|-1.0374300|-0.2891481	chr3	134066129	134068089	-	NA	NA	NA	NA	AMOTL2	NA	chr3:134070581-134078067	inter
CUST_14410_PI429285431	1.7164137	A	3.5462449	P	0.281297531970622	0	lncRNA	16069-1_{1..651}	lnc-ABHD2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABHD2-1:2	chr15	 89622665	 89623315	+	lnc-ABHD2-1	lnc-ABHD2-1:2	XLOC_011344	linc-ABHD2	ABHD2	NA	chr15:89631381-89632943	inter
CUST_39801_PI429285431	6.9661293	P	6.8268847	P	1.10132830565635	0	lncRNA	40710-1_{1..770}	n406199|NR_003660|lncRNA|Homosapiens||RefGeneNoncode|NR_003660||2.4365700|-0.1115115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406199|NR_003660|lncRNA|Homosapiens||RefGeneNoncode|NR_003660||2.4365700|-0.1115115	chr6	 58246158	 58246927	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26273_PI429285431	6.274101	P	6.4619946	P	0.877886540109408	0	lncRNA	27779-1_{1..1111}	lnc-C2orf42-3:28	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:28	chr2	 70312948	 70314058	-	lnc-C2orf42-3	lnc-C2orf42-3:28	ENSG00000179818.6	PCBP1-AS1	PCBP1	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30chr2:70314585-70316335"	NA	inter
CUST_4734_PI429285431	11.123139	P	11.152166	P	0.980081072978557	0	lncRNA	4678-1_{1..915}	"transcript_id ""ENST00000554286.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554286.1"" | genecode_v17"	chr14	 21161639	 21162553	-	ENSG00000258451.1	ENST00000554286.1	RP11-903H12.3	RP11-903H12.3-001	RNASE4	"hg19_refFlat_ANG:range=chr14:21161724-211621675'pad=0,hg19_refFlat_ANG:range=chr14:21161724-211621675'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.30;hg19_refFlat_RNASE4:range=chr14:21167531-211679745'pad=0,hg19_refFlat_RNASE4:range=chr14:21167531-211679745'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.50chr14:21152372-21168758"	NA	inner
CUST_13291_PI429285431	0.92745054	A	0.9110872	A	1.01140676964832	0	lncRNA	14924-1_{1..382}	lnc-AMPH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AMPH-1:1	chr7	 38407614	 38407995	-	lnc-AMPH-1	lnc-AMPH-1:1	XLOC_006412	linc-TARP	NA	NA	NA	inter
LNCA_19_P00321110	2.9495554	A	2.813872	A	1.09861310003982	0	lncRNA	ENST00000449545	XR_110191	XR_110191	NA	Hs.486886	LOC100505519	NA	ENST00000449545	THC2605869	GO:0051056|GO:0008624|GO:0048011|GO:0007264|GO:0035023|GO:0006915|GO:0030175|GO:0030027|GO:0005829|GO:0030426|GO:0005085|GO:0005737|GO:0005057|GO:0005089|GO:0044255	"PREDICTED: Homo sapiens hypothetical LOC100505519 (LOC100505519), miscRNA [XR_110191]"	chr6:155229919-155229978	hs|6q25.2	Agilent_HUMAN_G3V2	ENST00000449545	ENST00000449545	chr6	155229919	155229978	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50789_PI429285431	3.6006722	P	4.1525145	P	0.682148478544254	0	lncRNA	54444-2_{3001..4803}	hg19_lincRNAsTranscripts_TCONS_l2_00004348 range=chr11:3418281-3433649 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004348 range=chr11:3418281-3433649 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	  3421281	  3423083	+	NA	NA	NA	NA	NA	"hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0,hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0,hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0,hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0,hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80"	NA	inter
CUST_32516_PI429285431	0.900131	A	0.8921678	A	1.00553493107109	0	lncRNA	34183-1_{1..3000}	n339121|AK126763|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1551|NULL|-0.9393480|-0.2951840	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339121|AK126763|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1551|NULL|-0.9393480|-0.2951840	chr2	213778734	213781733	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51744_PI429285431	0.9105051	A	1.1978024	A	0.819435726939956	0	lncRNA	55297-1_{1..651}	hg19_lincRNAsTranscripts_TCONS_l2_00011879 range=chr18:69500337-69504170 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011879 range=chr18:69500337-69504170 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr18	 69500337	 69500987	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35842_PI429285431	1.1340207	A	0.900156	A	1.17598095831637	0	lncRNA	37242-1_{1..2913}	n344513|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_61|NULL|-1.2876700|-0.2595512	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344513|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_61|NULL|-1.2876700|-0.2595512	chr10	  3954177	  3957089	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_36376_PI429285431	0.90798444	A	0.89656866	A	1.00794420478455	0	lncRNA	37595-1_{1..522}	n344893|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_442|NULL|-1.5414200|-0.3869620	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344893|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_442|NULL|-1.5414200|-0.3869620	chr6	 30011360	 30011881	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25_PI429285431	1.2878205	A	1.376527	A	0.940365489781259	0	lncRNA	24-1_{1..460}	"transcript_id ""ENST00000519032.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000519032.1"" | genecode_v17"	chr8	 47842462	 47842921	-	ENSG00000253782.1	ENST00000519032.1	RP11-350F16.2	RP11-350F16.2-001	NA	NA	NA	inter
CUST_36248_PI429285431	1.0711954	A	1.1373835	A	0.95515839377173	0	lncRNA	37492-2_{3001..6000}	n344785|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_334|NULL|-1.4153100|-0.2582917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344785|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_334|NULL|-1.4153100|-0.2582917	chr6	  6683541	  6686540	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23258_PI429285431	1.1733623	A	0.92944926	A	1.18420023075592	0	lncRNA	24830-1_{1..571}	lnc-CTAGE1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTAGE1-1:1	chr18	 20487601	 20488171	-	lnc-CTAGE1-1	lnc-CTAGE1-1:1	ENSG00000266850.1	RP11-370A5.1	NA	NA	NA	inter
CUST_51466_PI429285431	2.2519522	A	1.5314867	A	1.64771360006394	0	lncRNA	55043-1_{1..227}	hg19_lincRNAsTranscripts_TCONS_l2_00009696 range=chr16:33412888-33414252 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009696 range=chr16:33412888-33414252 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 33412888	 33413114	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17847_PI429285431	0.90364444	A	0.90377414	A	0.999910102851672	0	lncRNA	19582-1_{1..1061}	lnc-PCDH8-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH8-3:1	chr13	 53711345	 53712405	-	lnc-PCDH8-3	lnc-PCDH8-3:1	XLOC_010625	linc-PCDH8-5	NA	NA	NA	inter
CUST_17709_PI429285431	0.9090984	A	0.91898006	A	0.993173959213319	0	lncRNA	19440-1_{1..503}	lnc-ATIC-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ATIC-5:1	chr2	216410099	216410601	+	lnc-ATIC-5	lnc-ATIC-5:1	XLOC_001848	linc-TMEM169-6	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-26.10"	NA	inter
CUST_7918_PI429285431	1.4328048	A	1.2675791	A	1.12134149069123	0	lncRNA	9531-1_{1..1647}	lnc-GOPC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GOPC-1:1	chr6	117996260	117997906	-	lnc-GOPC-1	lnc-GOPC-1:1	ENSG00000245439	XLOC_005818	NUS1	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50chr6:117986260-118006447"	NA	inter
CUST_43407_PI429285431	11.671705	P	12.157448	P	0.714129192647881	0	lncRNA	48219-1_{1..1717}	"gi|312222723|ref|NR_037577.1| Homo sapiens transmembrane protein 222 (TMEM222), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|312222723|ref|NR_037577.1| Homo sapiens transmembrane protein 222 (TMEM222), transcript variant 3, non-coding RNA"	Chr1	 27648636	 27650352	+	84065	NR_037577.1	NA	NA	NA	NA	NA	inter
CUST_45166_PI429285431	4.3531275	P	2.5982215	A	3.37504327359335	0	lncRNA	49641-1_{1..731}	"gi|310120194|ref|XR_110876.1| PREDICTED: Homo sapiens uncharacterized LOC100507420, transcript variant 1 (LOC100507420), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310120194|ref|XR_110876.1| PREDICTED: Homo sapiens uncharacterized LOC100507420, transcript variant 1 (LOC100507420), misc_RNA"	NA	NA	NA	NA	NA	XR_110876.1	NA	NA	NA	NA	NA	Unknown
CUST_26957_PI429285431	0.9217684	A	1.189737	A	0.830488099319406	0	lncRNA	28478-1_{1..506}	n324038|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053026|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053026|-1.3157400|-0.5250184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324038|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053026|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053026|-1.3157400|-0.5250184	chr9	 92921240	 92921745	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48420_PI429285431	10.121935	P	10.071266	P	1.03574510352045	0	lncRNA	52272-1_{1..848}	hg19_lincRNAsTranscripts_TCONS_l2_00000581 range=chr1:148928323-148951581 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000581 range=chr1:148928323-148951581 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	148928323	148929170	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35682_PI429285431	1.3798016	A	1.6519505	A	0.82808519057006	0	lncRNA	37102-1_{1..486}	n342843|AY266364|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5346|NULL|2.0354400|-0.1944812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342843|AY266364|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5346|NULL|2.0354400|-0.1944812	chr8	 66651746	 66652231	-	NA	NA	NA	NA	PDE7A	NA	chr8:66641746-66753969	inner
CUST_14477_PI429285431	7.438713	P	7.275002	P	1.12016480082551	0	lncRNA	16142-1_{1..1375}	lnc-SIK1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIK1-4:4	chr21	 44897944	 44899318	-	lnc-SIK1-4	lnc-SIK1-4:4	XLOC_014105	linc-SIK1-2	NA	NA	NA	inter
CUST_7814_PI429285431	0.9132463	A	0.9163041	A	0.997882739116888	0	lncRNA	9438-1_{1..670}	lnc-KIAA1147-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1147-2:9	chr7	141437183	141437852	-	lnc-KIAA1147-2	lnc-KIAA1147-2:9	ENSG00000228775	RP5-894A10.5	WEE2	"hg19_refFlat_WEE2:range=chr7:141408559-1414301205'pad=0,hg19_refFlat_WEE2:range=chr7:141408559-1414301205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50chr7:141427183-141431071"	NA	inter
LNCA_21_P0002777	0.9263773	A	0.9156417	A	1.00746910652683	0	lncRNA	ENST00000485006	NA	NA	NA	NA	XLOC_002859	NA	ENST00000485006	THC2760111	NA	"BROAD Institute lincRNA (XLOC_002859), lincRNA [TCONS_00005612]"	chr3:147713579-147713638	hs|3q24	Agilent_HUMAN_G3V2	ENST00000485006	ENST00000485006	chr3	147713579	147713638	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51627_PI429285431	0.9045265	A	0.8965775	A	1.00552503395122	0	lncRNA	55198-1_{1..551}	hg19_lincRNAsTranscripts_TCONS_l2_00011253 range=chr17:41458542-41465720 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011253 range=chr17:41458542-41465720 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 41458542	 41459092	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32515_PI429285431	0.9493201	A	0.92193997	A	1.01915969559233	0	lncRNA	34182-1_{1..696}	n339120|CR616459|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1550|NULL|-1.2694500|-0.5020466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339120|CR616459|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1550|NULL|-1.2694500|-0.5020466	chr2	210961033	210961728	-	NA	NA	NA	NA	C2orf67	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80chr2:210951033-210971729"	NA	inner
CUST_6950_PI429285431	3.7587934	P	4.1718054	P	0.751053716355292	0	lncRNA	6899-1_{1..477}	"transcript_id ""ENST00000432249.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432249.2"" | genecode_v17"	chr22	 23854681	 23855157	-	ENSG00000225413.2	ENST00000432249.2	AP000345.4	AP000345.4-001	NA	NA	NA	inter
CUST_50880_PI429285431	7.949111	P	7.402413	P	1.46073856947929	0	lncRNA	54523-1_{1..2902}	hg19_lincRNAsTranscripts_TCONS_l2_00006097 range=chr12:8383716-8392479 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006097 range=chr12:8383716-8392479 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  8383716	  8386617	-	NA	NA	NA	NA	FAM90A1	"hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-55.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30chr12:8373856-8380214"	NA	inter
CUST_50688_PI429285431	5.275091	P	5.228062	P	1.03313515480228	0	lncRNA	54359-1_{1..842}	hg19_lincRNAsTranscripts_TCONS_l2_00003552 range=chr10:48919831-48922964 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003552 range=chr10:48919831-48922964 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 48919831	 48920672	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38993_PI429285431	0.904188	A	0.90125513	A	1.0020349783351	0	lncRNA	39974-1_{1..1949}	n385261|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vhq.1||-0.2111600|-0.2961631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385261|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vhq.1||-0.2111600|-0.2961631	chr7	115893169	115895117	+	NA	NA	NA	NA	TES	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-27.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.31;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60chr7:115883169-115898837"	NA	inner
CUST_16485_PI429285431	1.1148233	A	0.8980652	A	1.16211923597266	0	lncRNA	18183-1_{1..573}	lnc-RGS7-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RGS7-1:3	chr1	240906783	240907355	-	lnc-RGS7-1	lnc-RGS7-1:3	XLOC_001278	linc-GREM2-2	NA	NA	NA	inter
CUST_31701_PI429285431	0.9235456	A	0.9118162	A	1.00816334037034	0	lncRNA	33445-1_{1..1798}	n338230|CR602107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|622|NULL|2.1875000|-0.2945757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338230|CR602107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|622|NULL|2.1875000|-0.2945757	chr1	152078823	152080620	-	NA	NA	NA	NA	TCHH	NA	chr1:152078793-152086556	inner
CUST_41442_PI429285431	4.406066	P	4.5697002	P	0.89277330834125	0	lncRNA	42618-1_{1..78}	ENST00000578110 ncrna:miRNA chromosome:GRCh37:18:53146452:53146529:1 gene:ENSG00000264571 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578110 ncrna:miRNA chromosome:GRCh37:18:53146452:53146529:1 gene:ENSG00000264571 gene_biotype:miRNA transcript_biotype:miRNA	chr18	 53146452	 53146529	+	ENSG00000264571	ENST00000578110	NA	NA	TCF4	NA	chr18:53136452-53156529	inner
CUST_27842_PI429285431	1.1546588	A	0.9155003	A	1.18030400893006	0	lncRNA	29432-1_{1..381}	n325074|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077920|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077920|-1.0117200|-0.2692942	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325074|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077920|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077920|-1.0117200|-0.2692942	chr20	  6998260	  6998640	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51263_PI429285431	2.548882	A	2.3448706	A	1.15189674446078	0	lncRNA	54870-1_{1..277}	hg19_lincRNAsTranscripts_TCONS_l2_00008487 range=chr15:28983496-28984317 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008487 range=chr15:28983496-28984317 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28983496	 28983772	+	NA	NA	NA	NA	LOC653720	NA	chr15:28973496-28983530	inter
CUST_4570_PI429285431	0.91942346	A	0.9102989	A	1.00634470595173	0	lncRNA	4519-1_{1..1780}	"transcript_id ""ENST00000585222.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585222.1"" | genecode_v17"	chr13	 30596158	 30597937	-	ENSG00000266505.1	ENST00000585222.1	RP11-629E24.2	RP11-629E24.2-001	NA	NA	NA	inter
CUST_561_PI429285431	0.9058378	A	1.5606176	A	0.635172430880327	0	lncRNA	553-1_{1..337}	"transcript_id ""ENST00000412221.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412221.1"" | genecode_v17"	chr1	212398622	212398958	-	ENSG00000226251.1	ENST00000412221.1	RP11-15I11.3	RP11-15I11.3-002	NA	NA	NA	inter
CUST_43180_PI429285431	0.9261734	A	0.9374457	A	0.992217082012822	0	lncRNA	47994-1_{1..746}	ENST00000602304 havana:sense_intronic chromosome:GRCh37:16:50746755:50747500:1 gene:ENSG00000270120 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602304 havana:sense_intronic chromosome:GRCh37:16:50746755:50747500:1 gene:ENSG00000270120 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr16	 50746755	 50747500	+	ENSG00000270120	ENST00000602304	NA	NA	NOD2	NA	chr16:50736755-50757500	inner
LNCA_21_P0011211	4.2124987	P	3.0557225	A	2.2295865430295	0	lncRNA	ENST00000442144	NA	NA	NA	NA	XLOC_l2_003889	NA	ENST00000442144	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003889), lincRNA [TCONS_l2_00007486]"	chr13:19978825-19978766	hs|13q12.11	Agilent_HUMAN_G3V2	ENST00000442144	ENST00000442144	chr13	 19978766	 19978825	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23873_PI429285431	1.0436862	A	0.92728454	A	1.0840277284503	0	lncRNA	25433-1_{1..868}	lnc-METTL21C-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-METTL21C-2:2	chr13	103019607	103020474	-	lnc-METTL21C-2	lnc-METTL21C-2:2	ENSG00000243319.1	FGF14-IT1	FGF14	NA	chr13:103009607-103029738	inner
CUST_12672_PI429285431	1.1188927	A	1.3465266	A	0.854034407677356	0	lncRNA	14288-1_{1..508}	lnc-ZFHX4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFHX4-2:2	chr8	 77422626	 77423133	+	lnc-ZFHX4-2	lnc-ZFHX4-2:2	XLOC_006850	linc-ZFHX4-1	NA	NA	NA	inter
CUST_35285_PI429285431	0.921894	A	0.9033259	A	1.01295360657086	0	lncRNA	36687-1_{1..1347}	n342304|BC041003|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4796|NULL|-1.1280000|-0.1902341	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342304|BC041003|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4796|NULL|-1.1280000|-0.1902341	chr1	147801123	147802469	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42554_PI429285431	8.865262	P	9.122728	P	0.836555985945251	0	lncRNA	45373-1_{1..128}	ENST00000391265 ncrna:snoRNA chromosome:GRCh37:5:40790179:40790306:-1 gene:ENSG00000212567 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391265 ncrna:snoRNA chromosome:GRCh37:5:40790179:40790306:-1 gene:ENSG00000212567 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	 40790179	 40790306	-	ENSG00000212567	ENST00000391265	NA	NA	PRKAA1	NA	chr5:40780179-40798297	inner
LNCA_21_P0003109	0.9982708	A	0.95325387	A	1.03169528615569	0	lncRNA	TCONS_00006465	NA	NA	NA	NA	XLOC_003075	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003075), lincRNA [TCONS_00006465]"	chr3:30563409-30553387	hs|3p24.1	Agilent_HUMAN_G3V2	TCONS_00006465	TCONS_00006465	chr3	 30553387	 30563409	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23312_PI429285431	5.6203213	P	5.944277	P	0.798876446708307	0	lncRNA	24883-1_{1..373}	lnc-EMX2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EMX2-3:2	chr10	119804787	119805159	+	lnc-EMX2-3	lnc-EMX2-3:2	ENSG00000231104.1	RP11-354M20.3	RAB11FIP2	"hg19_refFlat_RAB11FIP2:range=chr10:119768509-1198056745'pad=0,hg19_refFlat_RAB11FIP2:range=chr10:119768509-1198056745'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70chr10:119794787-119806114"	NA	inner
CUST_9191_PI429285431	5.3671064	P	5.2621255	P	1.07548015196186	0	lncRNA	10704-1_{1..674}	lnc-C4orf39-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C4orf39-1:3	chr4	165819878	165820551	+	lnc-C4orf39-1	lnc-C4orf39-1:3	ENSG00000248329	RP11-366M4.3	NA	NA	NA	inter
CUST_17441_PI429285431	1.6024308	A	1.2391052	A	1.2863877738844	0	lncRNA	19165-1_{1..542}	lnc-MKI67IP-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MKI67IP-6:1	chr2	124782252	124782793	-	lnc-MKI67IP-6	lnc-MKI67IP-6:1	XLOC_002306	linc-MKI67IP-7	CNTNAP5	NA	chr2:124782864-124792750	inter
CUST_32186_PI429285431	0.92040986	A	0.9155642	A	1.00336440250689	0	lncRNA	33884-1_{1..1863}	n338758|AK129948|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1179|NULL|-1.1147300|-0.4737314	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338758|AK129948|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1179|NULL|-1.1147300|-0.4737314	chr13	 67787976	 67789838	-	NA	NA	NA	NA	PCDH9	NA	chr13:67777976-67799866	inner
CUST_40201_PI429285431	3.050128	A	2.4550343	A	1.51057069075723	0	lncRNA	41032-1_{1..2483}	n408032|NR_027795|lncRNA|Homosapiens||RefGeneNoncode|NR_027795||3.4536200|-0.2211187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408032|NR_027795|lncRNA|Homosapiens||RefGeneNoncode|NR_027795||3.4536200|-0.2211187	chr6	 26421618	 26424100	+	NA	NA	NA	NA	BTN3A3	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30chr6:26440700-26440816"	NA	inter
CUST_11735_PI429285431	2.6564598	A	3.1571565	A	0.706765390700307	0	lncRNA	13316-1_{1..380}	lnc-PRR14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRR14-1:1	chr16	 30604255	 30604634	+	lnc-PRR14-1	lnc-PRR14-1:1	XLOC_011686	linc-PRR14-1	ZNF785	NA	chr16:30594255-30597092	inter
CUST_8146_PI429285431	0.92356694	A	0.9186175	A	1.00343658193504	0	lncRNA	9749-1_{1..480}	lnc-C21orf49-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C21orf49-1:3	chr21	 34109684	 34110163	+	lnc-C21orf49-1	lnc-C21orf49-1:3	ENSG00000238197	GCFC1-AS1	SYNJ1	NA	chr21:34099684-34100351	inner
CUST_33350_PI429285431	4.425532	P	4.268201	P	1.11522205668894	0	lncRNA	34931-1_{1..630}	n340068|U88048|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2523|NULL|-1.0047600|-0.3023049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340068|U88048|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2523|NULL|-1.0047600|-0.3023049	chr10	 74884658	 74885287	-	NA	NA	NA	NA	NUDT13	"hg19_refFlat_NUDT13:range=chr10:74874124-748906615'pad=0,hg19_refFlat_NUDT13:range=chr10:74874124-748906615'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60chr10:74874658-74891581"	NA	inner
CUST_20905_PI429285431	0.9693613	A	1.528845	A	0.678544952441737	0	lncRNA	22536-1_{1..393}	lnc-NBPF6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NBPF6-1:2	chr1	108918448	108918840	+	lnc-NBPF6-1	lnc-NBPF6-1:2	ENSG00000188740.6	RP11-483I13.4	NA	NA	NA	inter
CUST_12885_PI429285431	8.880057	P	8.299222	P	1.49571468476104	0	lncRNA	14513-1_{1..416}	lnc-TRPM6-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRPM6-4:1	chr9	 76753925	 76754340	-	lnc-TRPM6-4	lnc-TRPM6-4:1	XLOC_007738	linc-ALDH1A1-6	NA	NA	NA	inter
CUST_20931_PI429285431	4.704005	P	4.7385345	P	0.97635012177476	0	lncRNA	22562-1_{1..473}	lnc-PRR15L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRR15L-2:1	chr17	 46025257	 46025729	-	lnc-PRR15L-2	lnc-PRR15L-2:1	ENSG00000264019.1	RP11-6N17.6	PNPO	"hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr17:46018889-46026674"	NA	inner
CUST_15939_PI429285431	2.7285545	A	2.4200668	A	1.23840886157516	0	lncRNA	17636-1_{1..267}	lnc-C2CD4A-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2CD4A-5:2	chr15	 62768525	 62768791	+	lnc-C2CD4A-5	lnc-C2CD4A-5:2	XLOC_011280	linc-TLN2-1	NA	NA	NA	inter
CUST_3382_PI429285431	1.3989353	A	1.7552147	A	0.781176578708018	0	lncRNA	3356-1_{1..371}	"transcript_id ""ENST00000521572.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521572.1"" | genecode_v17"	chr9	 26801731	 26802101	+	ENSG00000253400.1	ENST00000521572.1	RP11-337A23.6	RP11-337A23.6-001	NA	NA	NA	inter
CUST_502_PI429285431	2.2838907	A	1.9874258	A	1.22813137827699	0	lncRNA	494-1_{1..628}	"transcript_id ""ENST00000412174.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412174.1"" | genecode_v17"	chr1	182096432	182097059	-	ENSG00000232309.1	ENST00000412174.1	GS1-122H1.1	GS1-122H1.1-001	NA	NA	NA	inter
CUST_47279_PI429285431	7.120872	P	5.7460766	P	2.5933113052246	0	lncRNA	51348-2_{3001..4023}	"gi|300244549|ref|NR_034009.1| Homo sapiens serine/arginine-rich splicing factor 6 (SRSF6), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300244549|ref|NR_034009.1| Homo sapiens serine/arginine-rich splicing factor 6 (SRSF6), transcript variant 2, non-coding RNA"	Chr20	 42089504	 42090526	+	6431	NR_034009.1	NA	NA	NA	NA	NA	inter
CUST_37570_PI429285431	0.929717	A	1.2328477	A	0.810491690602273	0	lncRNA	38673-1_{1..719}	n346047|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1597|NULL|-1.3074500|-0.2646078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346047|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1597|NULL|-1.3074500|-0.2646078	chr9	 96195187	 96195905	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2566_PI429285431	1.0474386	A	0.92448413	A	1.08896264823126	0	lncRNA	2554-1_{1..682}	"transcript_id ""ENST00000452402.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452402.1"" | genecode_v17"	chr6	 81153061	 81153742	+	ENSG00000233967.2	ENST00000452402.1	RP11-250B2.3	RP11-250B2.3-001	NA	NA	NA	inter
CUST_18136_PI429285431	8.886909	P	9.04422	P	0.896694839419432	0	lncRNA	19871-1_{1..376}	lnc-HTR2C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HTR2C-1:1	chrX	113220238	113220613	+	lnc-HTR2C-1	lnc-HTR2C-1:1	XLOC_008047	linc-HTR2C	NA	NA	NA	inter
CUST_15714_PI429285431	0.9476894	A	1.3859191	A	0.738039685828118	0	lncRNA	17400-3_{6001..8376}	lnc-QSOX2-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-QSOX2-1:13	chr9	139163802	139166177	-	lnc-QSOX2-1	lnc-QSOX2-1:13	XLOC_007895	linc-QSOX2	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50"	NA	inter
CUST_9452_PI429285431	4.9075956	P	4.99434	P	0.941645279569363	0	lncRNA	10957-1_{1..277}	lnc-NPHP4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NPHP4-3:1	chr1	  5058681	  5058957	-	lnc-NPHP4-3	lnc-NPHP4-3:1	XLOC_000686	linc-C1orf174-4	NA	NA	NA	inter
CUST_23345_PI429285431	6.4034367	P	6.6008606	P	0.8721064213736	0	lncRNA	24914-1_{1..751}	lnc-LATS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-LATS2-1:1	chr13	 21523444	 21524194	-	lnc-LATS2-1	lnc-LATS2-1:1	ENSG00000241831.1	RP11-569O4.7	NA	NA	NA	inter
CUST_13113_PI429285431	2.3883667	A	3.2811282	P	0.538582216781103	0	lncRNA	14737-1_{1..2155}	lnc-DMRT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRT2-1:1	chr9	  1047151	  1049305	+	lnc-DMRT2-1	lnc-DMRT2-1:1	XLOC_007262	linc-DMRT2	DMRT2	NA	chr9:1050346-1057554	inter
CUST_5189_PI429285431	8.356729	P	8.671511	P	0.803972466697223	0	lncRNA	5130-1_{1..601}	"transcript_id ""ENST00000559915.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559915.1"" | genecode_v17"	chr15	 53408562	 53409162	+	ENSG00000259237.1	ENST00000559915.1	RP11-209E8.1	RP11-209E8.1-001	NA	NA	NA	inter
CUST_31286_PI429285431	3.8089736	P	3.9269755	P	0.921462972649928	0	lncRNA	33074-1_{1..728}	n337747|BC039533|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|129|NULL|-1.0441100|-0.2844355	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337747|BC039533|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|129|NULL|-1.0441100|-0.2844355	chr1	 22350486	 22351213	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20"	NA	inter
CUST_41343_PI429285431	0.9143254	A	0.92245317	A	0.99438209889864	0	lncRNA	42410-1_{1..87}	ENST00000385005 ncrna:miRNA chromosome:GRCh37:19:54210707:54210793:1 gene:ENSG00000207738 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385005 ncrna:miRNA chromosome:GRCh37:19:54210707:54210793:1 gene:ENSG00000207738 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54210707	 54210793	+	ENSG00000207738	ENST00000385005	NA	NA	NA	NA	NA	inter
CUST_14940_PI429285431	6.7235246	P	6.921521	P	0.871760414864133	0	lncRNA	16604-1_{1..339}	lnc-DENND1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DENND1A-1:1	chr9	126102086	126102424	-	lnc-DENND1A-1	lnc-DENND1A-1:1	XLOC_007848	linc-STRBP	NA	NA	NA	inter
CUST_28721_PI429285431	2.0021253	A	2.008542	A	0.995562158934066	0	lncRNA	30421-1_{1..597}	n326111|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046488|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046488|-0.2319440|-0.3075408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326111|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046488|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046488|-0.2319440|-0.3075408	chr10	  3256007	  3256603	+	NA	NA	NA	NA	NA	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.91;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00"	NA	inter
CUST_17758_PI429285431	0.90560436	A	0.91043097	A	0.996660039007214	0	lncRNA	19490-1_{1..635}	lnc-ITGA4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITGA4-1:1	chr2	182549983	182550617	+	lnc-ITGA4-1	lnc-ITGA4-1:1	XLOC_001777	linc-SSFA2	NEUROD1	NA	chr2:182540833-182545392	inter
LNCA_21_P0005936	3.279702	P	2.9244864	A	1.2791767304038	0	lncRNA	TCONS_00015270	NA	NA	NA	NA	XLOC_006771	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006771), lincRNA [TCONS_00015270]"	chr8:34950752-34950811	hs|8p12	Agilent_HUMAN_G3V2	TCONS_00015270	TCONS_00015270	chr8	 34950752	 34950811	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10090_PI429285431	1.4691575	A	2.6396525	A	0.444268882286993	0	lncRNA	11616-2_{3001..3587}	lnc-FUT8-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-FUT8-2:2	chr14	 66597473	 66598059	+	lnc-FUT8-2	lnc-FUT8-2:2	XLOC_010856	linc-GPHN-2	NA	NA	NA	inter
CUST_45750_PI429285431	2.9956236	A	3.7567358	P	0.590041281716084	0	lncRNA	50099-1_{1..660}	"gi|38683401|ref|NR_001589.1| Homo sapiens hemoglobin, beta pseudogene 1 (HBBP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|38683401|ref|NR_001589.1| Homo sapiens hemoglobin, beta pseudogene 1 (HBBP1), non-coding RNA"	NA	NA	NA	NA	NA	NR_001589.1	NA	NA	NA	NA	NA	Unknown
CUST_12278_PI429285431	0.9141946	A	0.9025785	A	1.00808416880733	0	lncRNA	13887-1_{1..1937}	lnc-RP3-368B9.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP3-368B9.1.1-1:1	chr4	  3590661	  3592597	+	lnc-RP3-368B9.1.1-1	lnc-RP3-368B9.1.1-1:1	XLOC_003428	linc-ADRA2C-4	NA	NA	NA	inter
CUST_51000_PI429285431	1.7927312	A	1.668567	A	1.0898761491546	0	lncRNA	54644-1_{1..735}	hg19_lincRNAsTranscripts_TCONS_l2_00006750 range=chr13:25147587-25166188 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006750 range=chr13:25147587-25166188 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 25147587	 25148321	+	NA	NA	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10"	NA	inter
CUST_32664_PI429285431	2.5689554	A	3.2842295	A	0.609089398948655	0	lncRNA	34315-1_{1..1120}	n339290|BC035904|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1722|NULL|-0.9976140|-0.2643931	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339290|BC035904|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1722|NULL|-0.9976140|-0.2643931	chr3	 34917286	 34918405	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39636_PI429285431	1.4205563	A	1.8375567	A	0.74898025955064	0	lncRNA	40575-1_{1..343}	n405212|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000048938||-1.3163800|-0.2962787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405212|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000048938||-1.3163800|-0.2962787	chr10	 79958513	 79958855	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41599_PI429285431	6.806588	P	7.0263286	P	0.858719822424509	0	lncRNA	42947-1_{1..82}	ENST00000410679 ncrna:miRNA chromosome:GRCh37:1:156047164:156047245:1 gene:ENSG00000222611 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410679 ncrna:miRNA chromosome:GRCh37:1:156047164:156047245:1 gene:ENSG00000222611 gene_biotype:miRNA transcript_biotype:miRNA	chr1	156047164	156047245	+	ENSG00000222611	ENST00000410679	NA	NA	MEX3A	"hg19_refFlat_MEX3B:range=chr15:82335501-823380465'pad=0,hg19_refFlat_MEX3B:range=chr15:82335501-823380465'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_MEX3A:range=chr1:156046365-1560517895'pad=0,hg19_refFlat_MEX3A:range=chr1:156046365-1560517895'pad=0 3'pad=0 strand=- repeatMasking=none,-105.90;hg19_refFlat_MEX3D:range=chr19:1555562-15680575'pad=0,hg19_refFlat_MEX3D:range=chr19:1555562-15680575'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_MEX3D:range=chr19:1555330-15680575'pad=0,hg19_refFlat_MEX3D:range=chr19:1555330-15680575'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10chr1:156041804-156051789"	NA	inner
CUST_14963_PI429285431	0.9159127	A	0.91593754	A	0.99998278237226	0	lncRNA	16626-1_{1..568}	lnc-IRX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-IRX1-2:1	chr5	  3418889	  3419456	+	lnc-IRX1-2	lnc-IRX1-2:1	XLOC_004262	linc-IRX1-2	NA	NA	NA	inter
CUST_14614_PI429285431	3.0401688	A	3.5021708	P	0.725978133531857	0	lncRNA	16282-1_{1..997}	lnc-MBOAT1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBOAT1-3:4	chr6	 19749879	 19750875	-	lnc-MBOAT1-3	lnc-MBOAT1-3:4	XLOC_005633	linc-DEK-3	NA	NA	NA	inter
CUST_6079_PI429285431	3.8162208	P	3.9583511	P	0.906180091033663	0	lncRNA	6003-1_{1..379}	"transcript_id ""ENST00000582435.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582435.1"" | genecode_v17"	chr18	  9615262	  9615640	+	ENSG00000263627.1	ENST00000582435.1	RP11-692N5.1	RP11-692N5.1-001	PPP4R1	NA	chr18:9605262-9614600	inter
CUST_10327_PI429285431	4.7061987	P	5.4642	P	0.591314967293038	0	lncRNA	11855-1_{1..850}	lnc-SLC35G4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC35G4-1:1	chr18	 11488833	 11489682	+	lnc-SLC35G4-1	lnc-SLC35G4-1:1	XLOC_012626	linc-GNAL-1	NA	NA	NA	inter
CUST_26637_PI429285431	6.05113	P	6.1253858	P	0.949831956042725	0	lncRNA	28140-1_{1..476}	lnc-RMI1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RMI1-5:1	chr9	 86452323	 86452798	+	lnc-RMI1-5	lnc-RMI1-5:1	ENSG00000226877.1	RP11-575L7.2	KIF27	"hg19_refFlat_KIF27:range=chr9:86451916-865305065'pad=0,hg19_refFlat_KIF27:range=chr9:86451916-865305065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr9:86451613-86462502"	NA	inner
CUST_33308_PI429285431	3.9805903	P	4.0127535	P	0.977952839580549	0	lncRNA	34891-1_{1..2016}	n340025|BC043540|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2479|NULL|-0.9841400|-0.2193316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340025|BC043540|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2479|NULL|-0.9841400|-0.2193316	chr10	 49676049	 49678064	-	NA	NA	NA	NA	ARHGAP22	NA	chr10:49666049-49697239	inner
CUST_48792_PI429285431	7.9349937	P	8.08189	P	0.903191428642863	0	lncRNA	52630-1_{1..456}	hg19_lincRNAsTranscripts_TCONS_l2_00015126 range=chr2:220769045-220769635 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015126 range=chr2:220769045-220769635 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	220769045	220769500	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36969_PI429285431	1.0638583	A	1.8574641	A	0.576900412468229	0	lncRNA	38116-1_{1..423}	n345432|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_981|NULL|-1.4686000|-0.1528913	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345432|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_981|NULL|-1.4686000|-0.1528913	chr1	 31849908	 31850330	-	NA	NA	NA	NA	FABP3	"hg19_refFlat_HHLA3:range=chr1:70820635-708322015'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708322015'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20chr1:31839908-31845923"	NA	inter
LNCA_21_P0011973	0.9802947	A	0.9243562	A	1.03953512035422	0	lncRNA	TCONS_l2_00014953	NA	NA	NA	NA	XLOC_l2_008316	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008316), lincRNA [TCONS_l2_00014953]"	chr2:155548322-155548263	hs|2q24.1	Agilent_HUMAN_G3V2	TCONS_l2_00014953	TCONS_l2_00014953	chr2	155548263	155548322	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5725_PI429285431	1.1027428	A	0.8998601	A	1.15099590446113	0	lncRNA	5649-1_{1..756}	"transcript_id ""ENST00000585243.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585243.1"" | genecode_v17"	chr17	 10781510	 10782265	+	ENSG00000263508.1	ENST00000585243.1	RP11-963H4.3	RP11-963H4.3-001	NA	NA	NA	inter
CUST_18771_PI429285431	7.4456224	P	7.9101605	P	0.724703064465092	0	lncRNA	20467-1_{1..2170}	lnc-CXXC11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CXXC11-2:1	chr2	242918229	242920398	+	lnc-CXXC11-2	lnc-CXXC11-2:1	ENSG00000237940	AC093642.3	NA	NA	NA	inter
CUST_29581_PI429285431	7.4958816	P	7.9003105	P	0.755535317048723	0	lncRNA	31341-1_{1..319}	n333083|AF285093|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076251|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076251|-1.1096800|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333083|AF285093|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076251|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076251|-1.1096800|-1.0000000	chr20	 62711435	 62711753	-	NA	NA	NA	NA	OPRL1	NA	chr20:62711471-62731996	inner
CUST_36381_PI429285431	2.9690766	A	3.1618361	P	0.874930605341133	0	lncRNA	37600-1_{1..3000}	n344899|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_448|NULL|-1.5039900|-0.2521080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344899|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_448|NULL|-1.5039900|-0.2521080	chr6	 41075284	 41078283	+	NA	NA	NA	NA	NFYA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80chr6:41065284-41070146"	NA	inter
CUST_14892_PI429285431	0.9192137	A	1.0541224	A	0.910727466552769	0	lncRNA	16556-1_{1..1150}	lnc-C10orf31-7:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-C10orf31-7:6	chr10	 10836802	 10837951	-	lnc-C10orf31-7	lnc-C10orf31-7:6	XLOC_008730	linc-KIN-6	NA	NA	NA	inter
CUST_3374_PI429285431	3.3195312	P	3.6690774	P	0.784830927792398	0	lncRNA	3348-1_{1..359}	"transcript_id ""ENST00000439876.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439876.1"" | genecode_v17"	chr9	 20683303	 20683661	-	ENSG00000227071.1	ENST00000439876.1	RP11-4E23.2	RP11-4E23.2-001	KIAA1797	NA	chr9:20694519-20694687	inner
CUST_27068_PI429285431	12.879162	P	12.770118	P	1.07851332420554	0	lncRNA	28600-2_{3001..4049}	n324177|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327102|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327102|0.3110710|-0.4218601	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324177|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327102|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327102|0.3110710|-0.4218601	chr7	156954685	156955733	+	NA	NA	NA	NA	UBE3C	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40chr7:156941685-156995171"	NA	inner
CUST_954_PI429285431	2.596657	A	2.8356574	A	0.847332200015715	0	lncRNA	944-1_{1..654}	"transcript_id ""ENST00000412393.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412393.1"" | genecode_v17"	chr2	 96472866	 96473519	-	ENSG00000232931.1	ENST00000412393.1	LINC00342	LINC00342-001	NA	NA	NA	inter
CUST_27531_PI429285431	2.6149957	A	2.8830183	A	0.830457014774991	0	lncRNA	29107-1_{1..570}	n324716|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320111|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320111|-1.0138500|-0.1066037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324716|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320111|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320111|-1.0138500|-0.1066037	chr22	 19996028	 19996597	-	NA	NA	NA	NA	C22orf25	NA	chr22:20008631-20019226	inner
CUST_21019_PI429285431	1.7312692	A	1.7240461	A	1.0050192257222	0	lncRNA	22647-1_{1..580}	lnc-SH3BGRL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SH3BGRL3-1:1	chr1	 26580470	 26581049	+	lnc-SH3BGRL3-1	lnc-SH3BGRL3-1:1	ENSG00000225375.1	RP11-231P20.3	CEP85	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00chr1:26570470-26590855"	NA	inner
CUST_11904_PI429285431	1.2388161	A	1.5873115	A	0.7854027747368	0	lncRNA	13486-1_{1..623}	lnc-RCOR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RCOR2-1:1	chr11	 63580192	 63580814	-	lnc-RCOR2-1	lnc-RCOR2-1:1	XLOC_009458	linc-C11orf95	C11orf84	NA	chr11:63580923-63590588	inter
CUST_23292_PI429285431	0.90068215	A	0.9021905	A	0.998955037803844	0	lncRNA	24863-1_{1..524}	lnc-ANKK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKK1-1:1	chr11	113282747	113283270	+	lnc-ANKK1-1	lnc-ANKK1-1:1	ENSG00000256757.1	RP11-159N11.3	DRD2	NA	chr11:113280317-113292839	inner
LNCA_21_P0013003	1.2982265	A	1.4307379	A	0.91224206379115	0	lncRNA	ENST00000505824	NA	NA	NA	NA	XLOC_l2_012168	NA	ENST00000505824	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012168), lincRNA [TCONS_l2_00023852]"	chr5:103966299-103966240	hs|5q21.2	Agilent_HUMAN_G3V2	ENST00000505824	ENST00000505824	chr5	103966240	103966299	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19494_PI429285431	4.6781926	P	4.755432	P	0.947869663121327	0	lncRNA	21150-1_{1..540}	lnc-AGR3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGR3-1:1	chr7	 17338684	 17339223	-	lnc-AGR3-1	lnc-AGR3-1:1	ENSG00000237773.1	AC003075.4	AHR	"hg19_refFlat_AHR:range=chr7:17338889-173826885'pad=0,hg19_refFlat_AHR:range=chr7:17338889-173826885'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90chr7:17338276-17348981"	NA	inner
CUST_50692_PI429285431	4.61578	P	3.741545	P	1.83303584748698	0	lncRNA	54363-1_{1..490}	hg19_lincRNAsTranscripts_TCONS_l2_00004183 range=chr10:49265489-49272430 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004183 range=chr10:49265489-49272430 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 49265489	 49265978	-	NA	NA	NA	NA	FRMPD2	NA	chr10:49258300-49282430	inter
CUST_39125_PI429285431	4.530678	P	5.0473475	P	0.69898359434239	0	lncRNA	40101-1_{1..875}	n385714|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004cfq.1||0.6455930|-0.2030123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385714|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004cfq.1||0.6455930|-0.2030123	chr9	138363010	138363884	-	NA	NA	NA	NA	KIAA0649	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70chr9:138371648-138380739"	NA	inner
CUST_5593_PI429285431	0.9022126	A	1.1945401	A	0.816583600935233	0	lncRNA	5522-1_{1..536}	"transcript_id ""ENST00000565082.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565082.1"" | genecode_v17"	chr16	 66772166	 66772701	+	ENSG00000260558.1	ENST00000565082.1	RP11-63M22.1	RP11-63M22.1-001	DYNC1LI2	NA	chr16:66762166-66783229	inner
CUST_22581_PI429285431	2.7860022	A	2.5649478	A	1.16558514826596	0	lncRNA	24167-2_{3001..6000}	lnc-IL17B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-IL17B-2:1	chr5	148883578	148886577	-	lnc-IL17B-2	lnc-IL17B-2:1	ENSG00000230551.3	CTB-89H12.4	CSNK1A1	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70chr5:148874845-148894233"	NA	inner
CUST_1123_PI429285431	0.92896974	A	2.1205611	A	0.437819658681336	0	lncRNA	1112-1_{1..821}	"transcript_id ""ENST00000595809.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595809.1"" | genecode_v17"	chr2	145635301	145636121	-	ENSG00000268580.1	ENST00000595809.1	RP11-514A9.1	RP11-514A9.1-001	NA	NA	NA	inter
CUST_12235_PI429285431	0.90065473	A	0.8939508	A	1.00465762334301	0	lncRNA	13841-1_{1..896}	lnc-PKN2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PKN2-1:3	chr1	 89512542	 89513437	+	lnc-PKN2-1	lnc-PKN2-1:3	XLOC_000283	linc-GBP6-4	GBP1	NA	chr1:89517987-89522879	inter
CUST_14784_PI429285431	2.5496798	A	3.3382242	P	0.578927903820851	0	lncRNA	16445-1_{1..955}	lnc-ZNF507-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF507-3:2	chr19	 32564274	 32565228	+	lnc-ZNF507-3	lnc-ZNF507-3:2	XLOC_013039	linc-ZNF507-3	NA	NA	NA	inter
CUST_327_PI429201921	0.92546403	A	0.9050707	A	1.01423595890875	0	lncRNA	217-3_{6001..7741}	TC20001530.hg.1	TCONS_l2_00016902-XLOC_l2_008825 // Broad TUCP // linc-DEFB121 chr20:-:30009241-30016983 // chr20 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr20:-:30009241-30016983	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00016902-XLOC_l2_008825	linc-DEFB121	chr20	 30009241	 30016983	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29520_PI429285431	15.557232	P	15.768379	P	0.863850162946016	0	lncRNA	31278-1_{1..394}	n332970|AF098751|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000068557_11|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000068557_11|-0.4026210|-0.0728104	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332970|AF098751|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000068557_11|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000068557_11|-0.4026210|-0.0728104	chr6	  2875660	  2876053	+	NA	NA	NA	NA	NA	"hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60"	NA	inter
CUST_20769_PI429285431	2.980268	A	3.1046271	A	0.917411501770105	0	lncRNA	22402-1_{1..642}	lnc-ADSS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADSS-1:1	chr1	244572787	244573428	-	lnc-ADSS-1	lnc-ADSS-1:1	ENSG00000240963.1	RP11-518L10.2	ADSS	"hg19_refFlat_C1orf100:range=chr1:244528003-2445523715'pad=0,hg19_refFlat_C1orf100:range=chr1:244528003-2445523715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90chr1:244562787-244582894"	NA	inner
CUST_3167_PI429285431	1.6487927	A	1.1209433	A	1.44177835929506	0	lncRNA	3146-1_{1..453}	"transcript_id ""ENST00000520780.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520780.1"" | genecode_v17"	chr8	 70087814	 70088266	-	ENSG00000253373.1	ENST00000520780.1	RP11-21C17.1	RP11-21C17.1-001	NA	NA	NA	inter
CUST_48931_PI429285431	2.515401	A	3.0737236	A	0.679091274184369	0	lncRNA	52773-1_{1..1089}	hg19_lincRNAsTranscripts_TCONS_l2_00018911 range=chr3:147998604-148080529 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018911 range=chr3:147998604-148080529 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	147998604	147999692	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51535_PI429285431	1.139306	A	1.2911258	A	0.900114351665184	0	lncRNA	55102-1_{1..925}	hg19_lincRNAsTranscripts_TCONS_l2_00011353 range=chr17:53588361-53609981 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011353 range=chr17:53588361-53609981 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 53588361	 53589285	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43821_PI429285431	8.583037	P	8.970379	P	0.764536879146724	0	lncRNA	48545-1_{1..2282}	"gi|388596715|ref|NR_049787.1| Homo sapiens sorting nexin 17 (SNX17), transcript variant 10, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388596715|ref|NR_049787.1| Homo sapiens sorting nexin 17 (SNX17), transcript variant 10, non-coding RNA"	Chr2	 27593363	 27595644	+	9784	NR_049787.1	NA	NA	NA	NA	NA	inter
CUST_28175_PI429285431	1.8252065	A	2.4060347	A	0.668579859247485	0	lncRNA	29801-1_{1..424}	n325453|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323348|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323348|-0.9963460|-0.3112003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325453|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323348|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323348|-0.9963460|-0.3112003	chr2	  6785759	  6786182	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28779_PI429285431	0.932765	A	2.3367379	A	0.377887080352361	0	lncRNA	30486-1_{1..372}	n326185|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092332|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092332|-1.2777900|-0.2280643	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326185|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092332|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092332|-1.2777900|-0.2280643	chr1	230920439	230920810	+	NA	NA	NA	NA	CAPN9	NA	chr1:230910439-230934619	inner
CUST_37262_PI429285431	7.3819413	P	7.7359776	P	0.782392095531481	0	lncRNA	38369-1_{1..2529}	n345700|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1249|NULL|-1.3129800|-0.1935577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345700|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1249|NULL|-1.3129800|-0.1935577	chr1	 25358446	 25360974	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40"	NA	inter
CUST_3357_PI429285431	0.9262266	A	1.1215227	A	0.873393621444504	0	lncRNA	3332-1_{1..679}	"transcript_id ""ENST00000438147.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438147.2"" | genecode_v17"	chr9	  3684076	  3684754	-	ENSG00000226669.2	ENST00000438147.2	RP11-509J21.4	RP11-509J21.4-001	NA	NA	NA	inter
CUST_46944_PI429285431	11.50242	P	11.196165	P	1.23649379501504	0	lncRNA	51052-1_{1..2860}	"gi|388453039|ref|NR_049769.1| Homo sapiens C1q and tumor necrosis factor related protein 1 (C1QTNF1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388453039|ref|NR_049769.1| Homo sapiens C1q and tumor necrosis factor related protein 1 (C1QTNF1), transcript variant 5, non-coding RNA"	Chr17	 77021745	 77024604	+	114897	NR_049769.1	NA	NA	NA	NA	NA	inter
CUST_30644_PI429285431	9.878947	P	10.077599	P	0.871364353137349	0	lncRNA	32426-1_{1..231}	n336012|X79302|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323739|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323739|0.5205790|-0.2727707	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336012|X79302|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323739|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323739|0.5205790|-0.2727707	chr1	 54387383	 54387613	-	NA	NA	NA	NA	HSPB11	NA	chr1:54387234-54405775	inner
CUST_10347_PI429285431	1.3645319	A	1.1413116	A	1.16733634084686	0	lncRNA	11876-1_{1..348}	lnc-STON1-GTF2A1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STON1-GTF2A1L-1:1	chr2	 49003419	 49003766	+	lnc-STON1-GTF2A1L-1	lnc-STON1-GTF2A1L-1:1	XLOC_001466	linc-CHAC2-5	STON1-GTF2A1L	NA	chr2:48993419-49003656	inner
LNCA_21_P0002378	0.9233494	A	0.90860546	A	1.01027212013558	0	lncRNA	XR_109991	XR_109991	XR_109991	NA	NA	LOC727944	uncharacterized LOC727944	NA	THC2779523	NA	"PREDICTED: Homo sapiens hypothetical LOC727944, transcript variant 1 (LOC727944), miscRNA [XR_109991]"	chr2:490955-490896	hs|2p25.3	Agilent_HUMAN_G3V2	XR_109991	XR_109991	chr2	   490896	   490955	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18566_PI429285431	9.60394	P	10.397383	P	0.576965516099852	0	lncRNA	20276-1_{1..3000}	lnc-TEAD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TEAD4-1:1	chr12	  3152644	  3155643	+	lnc-TEAD4-1	lnc-TEAD4-1:1	ENSG00000250899	RP11-253E3.3	TEAD4	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80chr12:3142644-3149842"	NA	inter
CUST_49975_PI429285431	2.9938056	A	2.6490579	A	1.26992887664369	0	lncRNA	53718-2_{3001..5591}	hg19_lincRNAsTranscripts_TCONS_l2_00026265 range=chr7:149730165-149745413 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026265 range=chr7:149730165-149745413 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	149733165	149735755	+	NA	NA	NA	NA	NA	"hg19_refFlat_DPP6:range=chr7:153749906-1546841905'pad=0,hg19_refFlat_DPP6:range=chr7:153749906-1546841905'pad=0 3'pad=0 strand=+ repeatMasking=none,-114.10"	NA	inter
LNCA_21_P0008034	0.9232757	A	0.9090282	A	1.00992453925699	0	lncRNA	TCONS_00021727	NA	NA	NA	NA	XLOC_010307	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010307), lincRNA [TCONS_00021727]"	chr13:23733476-23733535	hs|13q12.12	Agilent_HUMAN_G3V2	TCONS_00021727	TCONS_00021727	chr13	 23733476	 23733535	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37085_PI429285431	7.2174134	P	7.264807	P	0.967682984963063	0	lncRNA	38212-1_{1..2517}	n345529|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1078|NULL|-1.4229600|-0.2515542	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345529|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1078|NULL|-1.4229600|-0.2515542	chr2	 64433591	 64436107	-	NA	NA	NA	NA	NA	"hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40"	NA	inter
CUST_10757_PI429285431	0.9110115	A	0.9108316	A	1.0001247049528	0	lncRNA	12293-1_{1..1333}	lnc-HPRT1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-HPRT1-1:4	chrX	133693416	133694748	+	lnc-HPRT1-1	lnc-HPRT1-1:4	XLOC_008068	linc-FAM122C-2	PLAC1	NA	chrX:133699873-133704428	inter
CUST_45_PI429285431	7.6998305	P	7.675868	P	1.01674824459176	0	lncRNA	44-1_{1..645}	"transcript_id ""ENST00000526796.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000526796.2"" | genecode_v17"	chr11	125128522	125129166	-	ENSG00000254932.2	ENST00000526796.2	RP11-687M24.8	RP11-687M24.8-001	PKNOX2	NA	chr11:125118522-125146694	inner
CUST_12313_PI429285431	0.9061185	A	1.0540341	A	0.902553526763285	0	lncRNA	13927-1_{1..3000}	lnc-TP53TG3-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TP53TG3-7:1	chr16	 32264688	 32267687	-	lnc-TP53TG3-7	lnc-TP53TG3-7:1	XLOC_011918	linc-C16orf58-1	LOC729264	"hg19_refFlat_TP53TG3B:range=chr16:33262150-332632525'pad=0,hg19_refFlat_TP53TG3B:range=chr16:33262150-332632525'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3B:range=chr16:32686316-326874185'pad=0,hg19_refFlat_TP53TG3B:range=chr16:32686316-326874185'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_TP53TG3C:range=chr16:33205615-332071605'pad=0,hg19_refFlat_TP53TG3C:range=chr16:33205615-332071605'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3:range=chr16:32686316-326874185'pad=0,hg19_refFlat_TP53TG3:range=chr16:32686316-326874185'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_TP53TG3B:range=chr16:33205615-332067175'pad=0,hg19_refFlat_TP53TG3B:range=chr16:33205615-332067175'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3:range=chr16:32685873-326874185'pad=0,hg19_refFlat_TP53TG3:range=chr16:32685873-326874185'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_TP53TG3:range=chr16:33205615-332067175'pad=0,hg19_refFlat_TP53TG3:range=chr16:33205615-332067175'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3B:range=chr16:32685873-326874185'pad=0,hg19_refFlat_TP53TG3B:range=chr16:32685873-326874185'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_TP53TG3:range=chr16:33205615-332071605'pad=0,hg19_refFlat_TP53TG3:range=chr16:33205615-332071605'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3C:range=chr16:33205615-332067175'pad=0,hg19_refFlat_TP53TG3C:range=chr16:33205615-332067175'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3:range=chr16:33262150-332636955'pad=0,hg19_refFlat_TP53TG3:range=chr16:33262150-332636955'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3C:range=chr16:32685873-326874185'pad=0,hg19_refFlat_TP53TG3C:range=chr16:32685873-326874185'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_TP53TG3C:range=chr16:33262150-332632525'pad=0,hg19_refFlat_TP53TG3C:range=chr16:33262150-332632525'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3C:range=chr16:32686316-326874185'pad=0,hg19_refFlat_TP53TG3C:range=chr16:32686316-326874185'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_TP53TG3B:range=chr16:33262150-332636955'pad=0,hg19_refFlat_TP53TG3B:range=chr16:33262150-332636955'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3D:range=chr16:32264675-322662245'pad=0,hg19_refFlat_TP53TG3D:range=chr16:32264675-322662245'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3C:range=chr16:33262150-332636955'pad=0,hg19_refFlat_TP53TG3C:range=chr16:33262150-332636955'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3:range=chr16:33262150-332632525'pad=0,hg19_refFlat_TP53TG3:range=chr16:33262150-332632525'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3B:range=chr16:33205615-332071605'pad=0,hg19_refFlat_TP53TG3B:range=chr16:33205615-332071605'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30chr16:32254688-32267243"	NA	inner
CUST_635_PI429285431	0.9019435	A	1.0240052	A	0.91887358500575	0	lncRNA	627-1_{1..860}	"transcript_id ""ENST00000591927.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591927.1"" | genecode_v17"	chr2	   309120	   309979	-	ENSG00000235779.2	ENST00000591927.1	AC079779.5	AC079779.5-016	NA	NA	NA	inter
LNCA_21_P0005198	7.013894	P	7.0746713	P	0.958747423040338	0	lncRNA	XR_113026	XR_113026	XR_113026	NA	Hs.647031	LOC100505669	uncharacterized LOC100505669	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505669 (LOC100505669), miscRNA [XR_113026]"	chr7:74805751-74805810	hs|7q11.23	Agilent_HUMAN_G3V2	XR_113026	XR_113026	chr7	 74805751	 74805810	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1828_PI429285431	0.905833	A	0.8951897	A	1.00740465324921	0	lncRNA	1817-1_{1..830}	"transcript_id ""ENST00000509399.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509399.1"" | genecode_v17"	chr4	104472084	104472913	-	ENSG00000250920.1	ENST00000509399.1	RP11-297P16.4	RP11-297P16.4-001	NA	NA	NA	inter
CUST_48822_PI429285431	3.1454039	A	3.0869412	A	1.04135552684445	0	lncRNA	52660-1_{1..752}	hg19_lincRNAsTranscripts_TCONS_l2_00015642 range=chr2:243030847-243101633 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015642 range=chr2:243030847-243101633 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	243030847	243031598	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5913_PI429285431	0.9161755	A	0.90615284	A	1.00697136614488	0	lncRNA	5844-1_{1..3000}	"transcript_id ""ENST00000577267.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577267.1"" | genecode_v17"	chr17	 56066403	 56069402	-	ENSG00000264112.1	ENST00000577267.1	RP11-159D12.2	RP11-159D12.2-002	SRSF1	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40chr17:56078280-56080840"	NA	inter
CUST_11031_PI429285431	5.0288353	P	5.2298346	P	0.869947774809841	0	lncRNA	12577-1_{1..1725}	lnc-CBLB-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLB-5:1	chr3	106436138	106437862	-	lnc-CBLB-5	lnc-CBLB-5:1	XLOC_003200	linc-CBLB-2	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	inter
LNCA_21_P0014463	0.92462957	A	0.91248983	A	1.00845012903392	0	lncRNA	XR_109945	XR_109945	XR_109945	NA	Hs.585960	LOC100507133	uncharacterized LOC100507133	NA	THC2710455	NA	"PREDICTED: Homo sapiens hypothetical LOC100507133 (LOC100507133), miscRNA [XR_109945]"	chr2:73518030-73518089	hs|2p13.1	Agilent_HUMAN_G3V2	XR_109945	XR_109945	chr2	 73518030	 73518089	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005247	1.1480377	A	2.2854443	A	0.454575993036721	0	lncRNA	ENST00000416593	NA	NA	NA	NA	XLOC_006177	NA	ENST00000416593	NA	NA	"BROAD Institute lincRNA (XLOC_006177), lincRNA [TCONS_00013046]"	chr7:95103251-95103310	hs|7q21.3	Agilent_HUMAN_G3V2	ENST00000416593	ENST00000416593	chr7	 95103251	 95103310	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34298_PI429285431	2.6128192	A	2.248245	A	1.28750157754786	0	lncRNA	35796-1_{1..3000}	n341159|AK127348|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3625|NULL|-0.2282470|-0.2490930	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341159|AK127348|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3625|NULL|-0.2282470|-0.2490930	chr11	131607717	131610716	+	NA	NA	NA	NA	NTM	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr11:131597717-131622114"	NA	inner
LNCA_21_P0003703	0.9258767	A	0.91476554	A	1.00773140336634	0	lncRNA	TCONS_00008384	NA	NA	NA	NA	XLOC_003836	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003836), lincRNA [TCONS_00008384]"	chr4:189706931-189706990	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008384	TCONS_00008384	chr4	189706931	189706990	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48109_PI429285431	0.91129553	A	0.8981756	A	1.00913551892719	0	lncRNA	51982-1_{1..1715}	"gi|410170200|ref|XR_113198.3| PREDICTED: Homo sapiens uncharacterized MGC24103 (MGC24103), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170200|ref|XR_113198.3| PREDICTED: Homo sapiens uncharacterized MGC24103 (MGC24103), misc_RNA"	NA	NA	NA	NA	NA	XR_113198.3	NA	NA	NA	NA	NA	Unknown
CUST_45876_PI429285431	0.91848755	A	0.9008541	A	1.01229757709168	0	lncRNA	50200-3_{6001..9000}	"gi|281182595|ref|NR_033149.1| Homo sapiens transmembrane protein 135 (TMEM135), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|281182595|ref|NR_033149.1| Homo sapiens transmembrane protein 135 (TMEM135), transcript variant 3, non-coding RNA"	Chr11	 86754886	 86757885	+	65084	NR_033149.1	NA	NA	NA	NA	NA	inter
CUST_15490_PI429285431	5.419223	P	5.365832	P	1.03770113678871	0	lncRNA	17179-1_{1..625}	lnc-WWOX-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WWOX-2:1	chr16	 79748717	 79749341	+	lnc-WWOX-2	lnc-WWOX-2:1	XLOC_011797	linc-DYNLRB2-3	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60"	NA	inter
CUST_5985_PI429285431	0.9505783	A	0.9554119	A	0.996655210102561	0	lncRNA	5912-2_{3001..4440}	"transcript_id ""ENST00000592572.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592572.1"" | genecode_v17"	chr17	 75527207	 75528646	+	ENSG00000267665.1	ENST00000592572.1	RP11-13K12.2	RP11-13K12.2-001	NA	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70"	NA	inter
CUST_5812_PI429285431	1.143011	A	0.9494317	A	1.14359744353509	0	lncRNA	5739-1_{1..803}	"transcript_id ""ENST00000583224.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583224.1"" | genecode_v17"	chr17	 32488756	 32489558	+	ENSG00000263571.1	ENST00000583224.1	CTC-304I17.5	CTC-304I17.5-001	ACCN1	NA	chr17:32478756-32483825	inter
CUST_36731_PI429285431	0.91773754	A	0.9076303	A	1.00703040296998	0	lncRNA	37907-1_{1..1398}	n345214|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_763|NULL|-1.4998700|-0.1996150	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345214|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_763|NULL|-1.4998700|-0.1996150	chr13	 34116710	 34118107	+	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10"	NA	inner
CUST_10616_PI429285431	4.5286956	P	4.7322493	P	0.868408829702016	0	lncRNA	12146-1_{1..1298}	lnc-WRB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRB-2:1	chr21	 40688971	 40690268	+	lnc-WRB-2	lnc-WRB-2:1	XLOC_013942	linc-WRB-2	BRWD1	NA	chr21:40678971-40685712	inter
CUST_5663_PI429285431	0.9184006	A	0.9160619	A	1.00162237794458	0	lncRNA	5589-1_{1..557}	"transcript_id ""ENST00000563825.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563825.1"" | genecode_v17"	chr16	 82543713	 82544269	-	ENSG00000261285.1	ENST00000563825.1	RP11-481E4.2	RP11-481E4.2-001	NA	"hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0,hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50"	NA	inter
LNCA_21_P0003852	0.94740355	A	0.9247701	A	1.01581201969612	0	lncRNA	TCONS_00008899	NA	NA	NA	NA	XLOC_003712	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003712), lincRNA [TCONS_00008899]"	chr4:140490090-140497511	hs|4q31.1	Agilent_HUMAN_G3V2	TCONS_00008899	TCONS_00008899	chr4	140490090	140497511	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13341_PI429285431	1.7896427	A	1.1422743	A	1.56630850681944	0	lncRNA	14978-1_{1..575}	lnc-POU3F1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POU3F1-1:3	chr1	 38678397	 38678971	-	lnc-POU3F1-1	lnc-POU3F1-1:3	XLOC_000788	linc-POU3F1-2	NA	NA	NA	inter
CUST_3426_PI429285431	0.9297027	A	1.0350493	A	0.929581588629692	0	lncRNA	3397-1_{1..3000}	"transcript_id ""ENST00000414223.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000414223.3"" | genecode_v17"	chr9	 70938523	 70941522	+	ENSG00000234394.3	ENST00000414223.3	RP11-561O23.5	RP11-561O23.5-002	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50"	NA	inter
CUST_49125_PI429285431	1.4594325	A	2.7739248	A	0.402066962194059	0	lncRNA	52952-1_{1..445}	hg19_lincRNAsTranscripts_TCONS_l2_00020594 range=chr4:79964667-80031207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020594 range=chr4:79964667-80031207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 79964667	 79965111	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29178_PI429285431	0.9014444	A	0.8984498	A	1.00207785430044	0	lncRNA	30924-1_{1..3000}	n326692|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006615|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006615|0.0782032|-0.1653799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326692|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006615|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006615|0.0782032|-0.1653799	chr1	 17388864	 17391863	+	NA	NA	NA	NA	PADI2	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PADI2:range=chr1:17395539-174458665'pad=0,hg19_refFlat_PADI2:range=chr1:17395539-174458665'pad=0 3'pad=0 strand=- repeatMasking=none,-99.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90chr1:17393256-17406699"	NA	inner
CUST_40846_PI429285431	0.9177412	A	0.9239028	A	0.995738211637101	0	lncRNA	41549-1_{1..1124}	n410618|NR_037861_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037861_3||-1.1380700|-0.2996699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410618|NR_037861_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037861_3||-1.1380700|-0.2996699	chr6	  3400948	  3402071	+	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10chr6:3390948-3414884"	NA	inner
CUST_13017_PI429285431	0.9742559	A	0.97705376	A	0.998062550512393	0	lncRNA	14644-1_{1..697}	lnc-ARHGEF5-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGEF5-2:3	chr7	144857165	144857861	+	lnc-ARHGEF5-2	lnc-ARHGEF5-2:3	XLOC_006283	linc-CNTNAP2-1	NA	NA	NA	inter
CUST_5460_PI429285431	1.3192033	A	1.7453216	A	0.744261596142606	0	lncRNA	5394-1_{1..454}	"transcript_id ""ENST00000567127.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567127.1"" | genecode_v17"	chr16	 24247425	 24247878	+	ENSG00000260264.1	ENST00000567127.1	AC004125.3	AC004125.3-001	CACNG3	NA	chr16:24266874-24274184	inter
CUST_27930_PI429285431	1.3776528	A	1.1400852	A	1.17900317219474	0	lncRNA	29531-1_{1..792}	n325174|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332150|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332150|-0.3087540|-0.1646199	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325174|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332150|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332150|-0.3087540|-0.1646199	chr2	112081888	112082679	+	NA	NA	NA	NA	NA	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-26.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40"	NA	inter
CUST_50838_PI429285431	1.4741642	A	4.521392	P	0.12097427514524	0	lncRNA	54483-1_{1..1372}	hg19_lincRNAsTranscripts_TCONS_l2_00004586 range=chr11:66176718-66184598 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004586 range=chr11:66176718-66184598 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 66176718	 66178089	+	NA	NA	NA	NA	NPAS4	NA	chr11:66188475-66194177	inter
CUST_28611_PI429285431	11.594226	P	10.218731	P	2.59456917366146	0	lncRNA	30295-1_{1..634}	n325977|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047862|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047862|-1.0258700|-0.2261265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325977|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047862|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047862|-1.0258700|-0.2261265	chr10	 47128254	 47128887	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27480_PI429285431	6.910242	P	7.1747484	P	0.832483509776446	0	lncRNA	29050-1_{1..500}	n324656|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000314900|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000314900|-1.1347400|-0.1507877	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324656|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000314900|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000314900|-1.1347400|-0.1507877	chr22	 43381482	 43381981	-	NA	NA	NA	NA	PACSIN2	NA	chr22:43371482-43409963	inner
CUST_20767_PI429285431	0.91205573	A	0.9105051	A	1.00107539263303	0	lncRNA	22400-1_{1..268}	lnc-PLA2G7-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLA2G7-2:3	chr6	 46655412	 46655679	-	lnc-PLA2G7-2	lnc-PLA2G7-2:3	ENSG00000242973.2	RP11-446F17.3	TDRD6	NA	chr6:46655612-46665537	inter
CUST_46769_PI429285431	5.9497414	P	5.904118	P	1.03212907413787	0	lncRNA	50919-1_{1..376}	"gi|224548978|ref|NR_027179.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 23, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224548978|ref|NR_027179.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 23, non-coding RNA"	Chr17	 16342301	 16342676	+	125144	NR_027179.1	NA	NA	NA	NA	NA	inter
CUST_27336_PI429285431	1.0159388	A	0.92360425	A	1.06609392647383	0	lncRNA	28896-1_{1..586}	n324492|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040993|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040993|-1.2426900|-0.4228229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324492|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040993|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040993|-1.2426900|-0.4228229	chr6	 54812874	 54813459	-	NA	NA	NA	NA	FAM83B	NA	chr6:54802874-54806820	inter
CUST_34704_PI429285431	0.9079811	A	0.9069054	A	1.00074589646464	0	lncRNA	36152-2_{3001..3550}	n341608|BC042052|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4079|NULL|-1.1359600|-0.2536660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341608|BC042052|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4079|NULL|-1.1359600|-0.2536660	chr8	128701587	128702136	-	NA	NA	NA	NA	MYC	NA	chr8:128748315-128753680	inter
CUST_978_PI429285431	1.1695613	A	0.9188278	A	1.1898118895229	0	lncRNA	967-1_{1..437}	"transcript_id ""ENST00000431897.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431897.1"" | genecode_v17"	chr2	103583866	103584302	-	ENSG00000224095.1	ENST00000431897.1	AC108051.1	AC108051.1-001	NA	NA	NA	inter
LNCA_21_P0002479	2.7973094	A	2.1677334	A	1.54711023967818	0	lncRNA	TCONS_00004357	NA	NA	NA	NA	XLOC_002236	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002236), lincRNA [TCONS_00004357]"	chr2:104991845-104914398	hs|2q12.1	Agilent_HUMAN_G3V2	TCONS_00004357	TCONS_00004357	chr2	104914398	104991845	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42141_PI429285431	11.410524	P	11.434409	P	0.983580473995227	0	lncRNA	44163-1_{1..84}	ENST00000578298 ncrna:miRNA chromosome:GRCh37:5:1708900:1708983:-1 gene:ENSG00000263746 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578298 ncrna:miRNA chromosome:GRCh37:5:1708900:1708983:-1 gene:ENSG00000263746 gene_biotype:miRNA transcript_biotype:miRNA	chr5	  1708900	  1708983	-	ENSG00000263746	ENST00000578298	NA	NA	NA	NA	NA	inter
CUST_31385_PI429285431	1.2358421	A	0.99838465	A	1.17891315854794	0	lncRNA	33163-1_{1..449}	n337851|AF093744|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|234|NULL|-1.2688900|-0.3858694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337851|AF093744|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|234|NULL|-1.2688900|-0.3858694	chrX	131337053	131337501	+	NA	NA	NA	NA	RAP2C	NA	chrX:131337053-131347437	inter
CUST_9041_PI429285431	1.2640419	A	1.5381367	A	0.826969026231463	0	lncRNA	10567-1_{1..2693}	lnc-MAP3K3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP3K3-1:1	chr17	 61795398	 61798090	+	lnc-MAP3K3-1	lnc-MAP3K3-1:1	ENSG00000245966	ENST00000502202	STRADA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50chr17:61785398-61805907"	NA	inner
CUST_15319_PI429285431	4.250228	P	4.471472	P	0.857825435934384	0	lncRNA	16998-1_{1..675}	lnc-TGFBRAP1-6:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGFBRAP1-6:8	chr2	105467770	105468444	-	lnc-TGFBRAP1-6	lnc-TGFBRAP1-6:8	XLOC_002241	linc-MFSD9-15	POU3F3	NA	chr2:105471969-105473471	inter
CUST_19181_PI429285431	0.9140019	A	0.90887547	A	1.00355969120618	0	lncRNA	20851-1_{1..483}	lnc-C4orf52-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C4orf52-1:1	chr4	 25774954	 25775436	+	lnc-C4orf52-1	lnc-C4orf52-1:1	ENSG00000250541.1	RP11-302F12.10	SEL1L3	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40chr4:25764954-25785199"	NA	inner
CUST_28416_PI429285431	2.4722645	A	2.8770907	A	0.755327280807756	0	lncRNA	30076-1_{1..310}	n325739|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044764|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044764|-1.2598800|-0.3220368	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325739|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044764|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044764|-1.2598800|-0.3220368	chr13	 44822457	 44822766	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42577_PI429285431	8.81596	P	8.723713	P	1.06602923248889	0	lncRNA	45414-1_{1..67}	ENST00000459159 ncrna:snoRNA chromosome:GRCh37:8:56986394:56986460:-1 gene:ENSG00000238650 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459159 ncrna:snoRNA chromosome:GRCh37:8:56986394:56986460:-1 gene:ENSG00000238650 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	 56986394	 56986460	-	ENSG00000238650	ENST00000459159	NA	NA	RPS20	NA	chr8:56980739-56987140	inner
CUST_36999_PI429285431	6.5227857	P	4.6019373	P	3.78645661896679	0	lncRNA	38141-1_{1..1531}	n345457|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1006|NULL|-1.3406200|-0.3957361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345457|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1006|NULL|-1.3406200|-0.3957361	chr1	118069960	118071490	+	NA	NA	NA	NA	MAN1A2	NA	chr1:118059960-118068320	inter
CUST_34115_PI429285431	4.97439	P	5.172235	P	0.871851904367253	0	lncRNA	35638-1_{1..435}	n340948|AY255572|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3413|NULL|2.1681800|-0.0047157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340948|AY255572|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3413|NULL|2.1681800|-0.0047157	chr11	  3249423	  3249857	-	NA	NA	NA	NA	MRGPRE	NA	chr11:3249041-3253616	inner
LNCA_21_P0010430	1.0379682	A	2.11172	A	0.475081917087033	0	lncRNA	TCONS_00029633	NA	NA	NA	NA	XLOC_014288	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014288), lincRNA [TCONS_00029633]"	chr22:51033767-51033826	hs|22q13.33	Agilent_HUMAN_G3V2	TCONS_00029633	TCONS_00029633	chr22	 51033767	 51033826	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27071_PI429285431	1.8738098	A	2.0211997	A	0.902882465888997	0	lncRNA	28603-1_{1..534}	n324180|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322326|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322326|-0.8402860|-0.3075835	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324180|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322326|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322326|-0.8402860|-0.3075835	chr7	154906661	154907194	-	NA	NA	NA	NA	NA	"hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-28.40;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.90"	NA	inter
CUST_14504_PI429285431	9.961939	P	10.087665	P	0.916542700069151	0	lncRNA	16170-1_{1..487}	lnc-MAN2C1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAN2C1-3:1	chr15	 75516527	 75517013	-	lnc-MAN2C1-3	lnc-MAN2C1-3:1	XLOC_011532	linc-RPP25-1	NA	NA	NA	inter
CUST_40595_PI429285431	2.6691885	A	3.548442	P	0.543648661000351	0	lncRNA	41341-1_{1..1414}	n410066|NR_036504|lncRNA|Homosapiens||RefGeneNoncode|NR_036504||1.3487500|-0.0946866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410066|NR_036504|lncRNA|Homosapiens||RefGeneNoncode|NR_036504||1.3487500|-0.0946866	chr19	 36980528	 36981941	+	NA	NA	NA	NA	ZNF566	NA	chr19:36970528-36980463	inter
CUST_48167_PI429285431	1.0485251	A	1.0747374	A	0.98199507900085	0	lncRNA	52033-1_{1..1486}	"gi|341914088|ref|XR_133146.1| PREDICTED: Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 40 pseudogene (LOC100509290), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341914088|ref|XR_133146.1| PREDICTED: Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 40 pseudogene (LOC100509290), misc_RNA"	NA	NA	NA	NA	NA	XR_133146.1	NA	NA	NA	NA	NA	Unknown
CUST_30800_PI429285431	1.4295086	A	1.2965367	A	1.09655023039321	0	lncRNA	32587-1_{1..333}	n336694|Z70656|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327940|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327940|1.1594700|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336694|Z70656|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327940|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327940|1.1594700|-1.0000000	chr14	106877618	106877950	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21716_PI429285431	1.1388135	A	0.9224424	A	1.16180754166719	0	lncRNA	23326-1_{1..906}	lnc-SLC38A8-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC38A8-4:1	chr16	 83806414	 83807319	-	lnc-SLC38A8-4	lnc-SLC38A8-4:1	ENSG00000260788.1	RP11-298D21.1	CDH13	NA	chr16:83796414-83816541	inner
CUST_50034_PI429285431	14.308747	P	14.146581	P	1.11896584456017	0	lncRNA	53770-1_{1..778}	hg19_lincRNAsTranscripts_TCONS_l2_00028151 range=chr8:33716885-33717718 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028151 range=chr8:33716885-33717718 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 33716885	 33717662	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13810_PI429285431	0.90996766	A	1.198084	A	0.818970652794977	0	lncRNA	15452-1_{1..826}	lnc-HERC6-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HERC6-2:4	chr4	 89262455	 89263280	+	lnc-HERC6-2	lnc-HERC6-2:4	XLOC_003603	linc-HERC6-2	NA	NA	NA	inter
CUST_31952_PI429285431	6.8583937	P	6.686823	P	1.12628403244566	0	lncRNA	33677-1_{1..3000}	n338510|BC047554|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|907|NULL|-0.4133340|-0.3930993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338510|BC047554|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|907|NULL|-0.4133340|-0.3930993	chr19	 35414101	 35417100	-	NA	NA	NA	NA	ZNF30	NA	chr19:35417807-35427732	inter
CUST_39356_PI429285431	0.9034246	A	0.9786278	A	0.9492084178955	0	lncRNA	40320-1_{1..1470}	n386450|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lfo.1||0.3740320|-0.3688556	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386450|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lfo.1||0.3740320|-0.3688556	chr7	 96607658	 96609127	-	NA	NA	NA	NA	DLX5	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20chr7:96649702-96651361"	NA	inter
CUST_16565_PI429285431	1.8721614	A	2.045246	A	0.886944292990776	0	lncRNA	18266-1_{1..389}	lnc-ABT1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABT1-4:1	chr6	 26752185	 26752573	+	lnc-ABT1-4	lnc-ABT1-4:1	XLOC_005215	linc-HIST1H2AG-3	NA	NA	NA	inter
CUST_46385_PI429285431	0.8987829	A	0.9038044	A	0.996525411833448	0	lncRNA	50602-1_{1..1682}	"gi|300068983|ref|NR_033943.1| Homo sapiens uncharacterized LOC100129345 (LOC100129345), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300068983|ref|NR_033943.1| Homo sapiens uncharacterized LOC100129345 (LOC100129345), non-coding RNA"	Chr14	 98098984	 98100665	-	100129345	NR_033943.1	NA	NA	NA	NA	NA	inter
CUST_23831_PI429285431	6.5307884	P	6.935308	P	0.755487819208039	0	lncRNA	25394-1_{1..483}	lnc-TCF7L2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCF7L2-2:1	chr10	114511017	114511499	+	lnc-TCF7L2-2	lnc-TCF7L2-2:1	ENSG00000234221.1	RP11-25C19.1	VTI1A	NA	chr10:114501017-114521234	inner
CUST_35424_PI429285431	7.1899934	P	7.064975	P	1.09052164098938	0	lncRNA	36833-1_{1..3000}	n342487|D86972|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4981|NULL|7.0012800|-0.2001420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342487|D86972|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4981|NULL|7.0012800|-0.2001420	chr3	 10290218	 10293217	+	NA	NA	NA	NA	IRAK2	NA	chr3:10280218-10285427	inner
CUST_23968_PI429285431	1.7223592	A	2.8772776	A	0.449091586707509	0	lncRNA	25523-1_{1..436}	lnc-NCDN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NCDN-1:1	chr1	 36058902	 36059337	+	lnc-NCDN-1	lnc-NCDN-1:1	ENSG00000225306.1	RP5-983H21.3	TFAP2E	NA	chr1:36048902-36060929	inner
LNCA_21_P0002200	0.96538144	A	0.92677623	A	1.02712033193004	0	lncRNA	TCONS_00003640	NA	NA	NA	NA	XLOC_001430	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001430), lincRNA [TCONS_00003640]"	chr2:37839514-37839573	hs|2p22.2	Agilent_HUMAN_G3V2	TCONS_00003640	TCONS_00003640	chr2	 37839514	 37839573	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14846_PI429285431	2.6176558	A	2.7903953	A	0.88715647995908	0	lncRNA	16508-1_{1..254}	lnc-RAD23B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAD23B-2:2	chr9	110105164	110105417	+	lnc-RAD23B-2	lnc-RAD23B-2:2	XLOC_007506	linc-ACTL7A-10	NA	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20"	NA	inter
CUST_5100_PI429285431	0.90582544	A	0.9099584	A	0.997139349908091	0	lncRNA	5040-1_{1..556}	"transcript_id ""ENST00000568541.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568541.1"" | genecode_v17"	chr15	 24451931	 24452486	+	ENSG00000260780.1	ENST00000568541.1	RP11-580I1.1	RP11-580I1.1-001	NA	NA	NA	inter
CUST_6447_PI429285431	1.0173788	A	0.9112401	A	1.07634359896018	0	lncRNA	6388-1_{1..1426}	"transcript_id ""ENST00000590611.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000590611.1"" | genecode_v17"	chr19	 32079161	 32080586	+	ENSG00000267465.1	ENST00000590611.1	AC011525.4	AC011525.4-003	THEG5	"hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0,hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20chr19:32083187-32083945"	NA	inner
CUST_50649_PI429285431	0.90878063	A	0.9031324	A	1.00392272853753	0	lncRNA	54328-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00002972 range=chr10:37537314-37591595 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002972 range=chr10:37537314-37591595 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 37537314	 37540313	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13065_PI429285431	0.96252966	A	0.92118925	A	1.02906949255093	0	lncRNA	14691-2_{3001..5242}	lnc-TSHZ1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSHZ1-1:1	chr18	 72894791	 72897032	+	lnc-TSHZ1-1	lnc-TSHZ1-1:1	XLOC_012720	linc-TSHZ1-2	NA	NA	NA	inter
LNCA_21_P0012773	0.9783756	A	0.92665255	A	1.03650210760441	0	lncRNA	ENST00000505298	NA	NA	NA	NA	XLOC_l2_011098	NA	ENST00000505298	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011098), lincRNA [TCONS_l2_00021859]"	chr4:36498429-36498370	hs|4p14	Agilent_HUMAN_G3V2	ENST00000505298	ENST00000505298	chr4	 36498370	 36498429	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2335_PI429285431	0.9166699	A	0.9165244	A	1.0001008580006	0	lncRNA	2327-1_{1..589}	"transcript_id ""ENST00000596736.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596736.1"" | genecode_v17"	chr5	120658249	120658837	+	ENSG00000229855.3	ENST00000596736.1	CTC-546K23.1	CTC-546K23.1-006	NA	NA	NA	inter
CUST_42207_PI429285431	5.4667726	P	5.3679075	P	1.0709306805423	0	lncRNA	44293-1_{1..67}	ENST00000583107 ncrna:miRNA chromosome:GRCh37:1:209796789:209796855:-1 gene:ENSG00000264831 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583107 ncrna:miRNA chromosome:GRCh37:1:209796789:209796855:-1 gene:ENSG00000264831 gene_biotype:miRNA transcript_biotype:miRNA	chr1	209796789	209796855	-	ENSG00000264831	ENST00000583107	NA	NA	CAMK1G	NA	chr1:209786789-209787284	inner
CUST_45449_PI429285431	1.8867501	A	1.759206	A	1.09243246955417	0	lncRNA	49866-1_{1..445}	"gi|310124537|ref|XR_109854.1| PREDICTED: Homo sapiens uncharacterized LOC100506532 (LOC100506532), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310124537|ref|XR_109854.1| PREDICTED: Homo sapiens uncharacterized LOC100506532 (LOC100506532), misc_RNA"	Chr9	137418960	137419404	+	100506532	XR_109854.2	NA	NA	NA	NA	NA	inter
CUST_38571_PI429285431	3.715942	P	4.3315024	P	0.652676318917969	0	lncRNA	39583-1_{1..1072}	n383544|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002pxm.1||2.2888500|-0.1033035	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n383544|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002pxm.1||2.2888500|-0.1033035	chr19	 52206206	 52207277	+	NA	NA	NA	NA	HAS1	NA	chr19:52216365-52218101	inter
CUST_14760_PI429285431	0.9404101	A	0.92037165	A	1.01398650370044	0	lncRNA	16421-1_{1..1328}	lnc-BOD1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BOD1-1:8	chr5	173141829	173143156	-	lnc-BOD1-1	lnc-BOD1-1:8	XLOC_005087	linc-BOD1-3	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50"	NA	inter
CUST_11205_PI429285431	8.139593	P	7.488663	P	1.57018004988762	0	lncRNA	12763-1_{1..361}	lnc-KIAA1210-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1210-2:1	chrX	117956645	117957005	-	lnc-KIAA1210-2	lnc-KIAA1210-2:1	XLOC_008216	linc-KLHL13-1	ZCCHC12	NA	chrX:117957787-117960931	inter
CUST_37239_PI429285431	1.4250786	A	2.2633142	A	0.559327201864396	0	lncRNA	38347-1_{1..3000}	n345670|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1219|NULL|-1.6520900|-0.4182810	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345670|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1219|NULL|-1.6520900|-0.4182810	chr5	 44826677	 44829676	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9704_PI429285431	0.92501915	A	0.91505945	A	1.00692742232304	0	lncRNA	11220-1_{1..582}	lnc-LONP2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-LONP2-4:1	chr16	 48655702	 48656283	+	lnc-LONP2-4	lnc-LONP2-4:1	XLOC_011711	linc-C16orf78-4	NA	NA	NA	inter
CUST_11242_PI429285431	2.1410234	A	2.3094602	A	0.88980628876172	0	lncRNA	12800-1_{1..2873}	lnc-RAB40AL-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB40AL-1:3	chrX	102216534	102219406	+	lnc-RAB40AL-1	lnc-RAB40AL-1:3	XLOC_008033	linc-BEX4	NA	NA	NA	inter
CUST_6841_PI429285431	3.2561529	A	2.910143	A	1.27104041135471	0	lncRNA	6789-1_{1..443}	"transcript_id ""ENST00000437194.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437194.1"" | genecode_v17"	chr21	 29584625	 29585067	-	ENSG00000236532.1	ENST00000437194.1	AL035610.2	AL035610.2-003	NA	NA	NA	inter
LNCA_21_P0001354	1.9164679	A	0.92126614	A	1.99335927621296	0	lncRNA	TCONS_00001079	NA	NA	NA	NA	XLOC_000318	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000318), lincRNA [TCONS_00001079]"	chr1:101639245-101639304	hs|1p21.2	Agilent_HUMAN_G3V2	TCONS_00001079	TCONS_00001079	chr1	101639245	101639304	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10445_PI429285431	1.0567644	A	0.91952556	A	1.09979820723699	0	lncRNA	11971-1_{1..1582}	lnc-C5orf39-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf39-1:1	chr5	 43067400	 43068981	-	lnc-C5orf39-1	lnc-C5orf39-1:1	XLOC_004805	linc-C5orf39	NA	NA	NA	inter
CUST_52142_PI429285431	0.950317	A	1.1177503	A	0.890425429469418	0	lncRNA	55666-1_{1..483}	hg19_lincRNAsTranscripts_TCONS_l2_00018333 range=chr22:20992648-20993422 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018333 range=chr22:20992648-20993422 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 20992648	 20993130	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28923_PI429285431	5.552743	P	5.727169	P	0.886120006425534	0	lncRNA	30640-1_{1..971}	n326348|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000083235|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000083235|-1.3731200|-0.4575714	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326348|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000083235|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000083235|-1.3731200|-0.4575714	chr1	165411777	165412747	-	NA	NA	NA	NA	RXRG	NA	chr1:165401777-165414592	inter
CUST_24455_PI429285431	0.9107448	A	1.7795544	A	0.547598500062368	0	lncRNA	26008-1_{1..645}	lnc-AGMAT-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGMAT-2:1	chr1	 16063356	 16064000	-	lnc-AGMAT-2	lnc-AGMAT-2:1	ENSG00000237938.1	RP11-288I21.1	TMEM82	"hg19_refFlat_PLEKHM2:range=chr1:16011054-160604295'pad=0,hg19_refFlat_PLEKHM2:range=chr1:16011054-160604295'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.00chr1:16068917-16073391"	NA	inner
CUST_46435_PI429285431	2.4035082	A	2.8071349	A	0.755955543743527	0	lncRNA	50644-2_{3001..3166}	"gi|375493495|ref|NR_046324.1| Homo sapiens cholinergic receptor, nicotinic, alpha 7 (neuronal) (CHRNA7), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375493495|ref|NR_046324.1| Homo sapiens cholinergic receptor, nicotinic, alpha 7 (neuronal) (CHRNA7), transcript variant 3, non-coding RNA"	Chr15	 32325686	 32325851	+	1139	NR_046324.1	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.00"	NA	inter
CUST_19300_PI429285431	3.930739	P	3.8307514	P	1.07176425065613	0	lncRNA	20967-1_{1..460}	lnc-BDKRB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BDKRB1-1:1	chr14	 96680976	 96681435	+	lnc-BDKRB1-1	lnc-BDKRB1-1:1	ENSG00000258412.1	RP11-404P21.5	BDKRB2	NA	chr14:96671135-96691155	inner
CUST_20861_PI429285431	1.9807501	A	1.7161098	A	1.20133648891525	0	lncRNA	22492-1_{1..950}	lnc-BLID-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BLID-1:12	chr11	121971082	121972031	-	lnc-BLID-1	lnc-BLID-1:12	ENSG00000255248.2	RP11-166D19.1	NA	NA	NA	inter
CUST_47022_PI429285431	4.803867	P	4.3426304	P	1.37672136348563	0	lncRNA	51115-1_{1..3000}	"gi|186972140|ref|NR_023312.1| Homo sapiens cold inducible RNA binding protein (CIRBP), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|186972140|ref|NR_023312.1| Homo sapiens cold inducible RNA binding protein (CIRBP), transcript variant 2, non-coding RNA"	Chr19	  1269267	  1272266	+	1153	NR_023312.1	NA	NA	NA	NA	NA	inter
CUST_24146_PI429285431	1.9542992	A	1.0157822	A	1.91655712523687	0	lncRNA	25698-1_{1..308}	lnc-NPAS3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPAS3-1:1	chr14	 34528338	 34528645	+	lnc-NPAS3-1	lnc-NPAS3-1:1	ENSG00000258897.1	RP11-1007I4.1	NA	NA	NA	inter
CUST_19902_PI429285431	7.870296	P	8.19963	P	0.795903816833403	0	lncRNA	21557-1_{1..568}	lnc-C11orf41-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf41-1:1	chr11	 33731100	 33731667	+	lnc-C11orf41-1	lnc-C11orf41-1:1	ENSG00000254549.1	RP4-541C22.4	CD59	NA	chr11:33724556-33741568	inner
CUST_27870_PI429285431	0.94532025	A	0.9953519	A	0.965915138341526	0	lncRNA	29463-1_{1..663}	n325106|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329758|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329758|-1.0809100|-0.2548267	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325106|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329758|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329758|-1.0809100|-0.2548267	chr2	235751278	235751940	+	NA	NA	NA	NA	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00"	NA	inter
CUST_44129_PI429285431	8.810486	P	7.622448	P	2.27842676648727	0	lncRNA	48792-2_{3001..3795}	"gi|374532810|ref|NR_046252.1| Homo sapiens FGD5 antisense RNA 1 (FGD5-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|374532810|ref|NR_046252.1| Homo sapiens FGD5 antisense RNA 1 (FGD5-AS1), transcript variant 2, non-coding RNA"	Chr3	 14987286	 14988080	-	100505641	NR_046252.1	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50"	NA	inter
CUST_39103_PI429285431	2.828661	A	2.8506923	A	0.984845075950773	0	lncRNA	40079-1_{1..361}	n385655|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azx.1||-1.0248200|-0.1762044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385655|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azx.1||-1.0248200|-0.1762044	chr9	102128680	102129040	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9162_PI429285431	4.0976863	P	2.613063	A	2.79844093895049	0	lncRNA	10680-1_{1..884}	lnc-CNTRL-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CNTRL-1:2	chr9	123607271	123608154	+	lnc-CNTRL-1	lnc-CNTRL-1:2	ENSG00000226752	RP11-27I1.2	PSMD5	NA	chr9:123597271-123605206	inter
LNCA_21_P0008333	2.4637673	A	3.677506	P	0.431149855022521	0	lncRNA	TCONS_00022499	NA	NA	NA	NA	XLOC_010825	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010825), lincRNA [TCONS_00022499]"	chr14:51413201-51413260	hs|14q22.1	Agilent_HUMAN_G3V2	TCONS_00022499	TCONS_00022499	chr14	 51413201	 51413260	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32916_PI429285431	2.5892558	A	2.7651274	A	0.885232546857087	0	lncRNA	34541-1_{1..563}	n339589|U00791|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2033|NULL|-1.0189700|-0.2549097	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339589|U00791|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2033|NULL|-1.0189700|-0.2549097	chr20	 18569964	 18570526	-	NA	NA	NA	NA	DTD1	NA	chr20:18568556-18580518	inner
LNCA_21_P0010034	0.9282272	A	0.91092336	A	1.01206632566148	0	lncRNA	TCONS_00028366	NA	NA	NA	NA	XLOC_013721	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013721), lincRNA [TCONS_00028366]"	chr20:30865165-30863445	hs|20q11.21	Agilent_HUMAN_G3V2	TCONS_00028366	TCONS_00028366	chr20	 30863445	 30865165	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005474	2.139562	A	1.6719602	A	1.38280890557792	0	lncRNA	TCONS_00013714	NA	NA	NA	NA	XLOC_006364	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006364), lincRNA [TCONS_00013714]"	chr7:19039901-19039842	hs|7p21.1	Agilent_HUMAN_G3V2	TCONS_00013714	TCONS_00013714	chr7	 19039842	 19039901	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36324_PI429285431	2.7323623	A	3.2036731	P	0.721308935004052	0	lncRNA	37555-1_{1..1731}	n344850|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_399|NULL|-1.3067600|-0.2346762	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344850|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_399|NULL|-1.3067600|-0.2346762	chr5	133842288	133844018	+	NA	NA	NA	NA	NA	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-59.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_38512_PI429285431	17.815468	P	17.679905	P	1.09852141919652	0	lncRNA	39523-1_{1..932}	n383080|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gvw.2||5.7060700|-0.1458297	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383080|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gvw.2||5.7060700|-0.1458297	chr17	 19349246	 19350177	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44176_PI429285431	0.91102874	A	1.5776479	A	0.6299812693297	0	lncRNA	48833-2_{3001..3153}	"gi|224493666|ref|NR_027122.1| Homo sapiens embryonic stem cell related (non-protein coding) (ESRG), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224493666|ref|NR_027122.1| Homo sapiens embryonic stem cell related (non-protein coding) (ESRG), non-coding RNA"	Chr3	 54669151	 54669303	-	790952	NR_027122.1	NA	NA	NA	NA	NA	inter
CUST_622_PI429285431	1.1527901	A	0.8971595	A	1.19385746244183	0	lncRNA	614-1_{1..580}	"transcript_id ""ENST00000437830.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437830.1"" | genecode_v17"	chr1	248855492	248856071	+	ENSG00000229703.1	ENST00000437830.1	XX-CR54.1	XX-CR54.1-001	OR14I1	NA	chr1:248845492-248845605	inter
CUST_10009_PI429285431	1.1043377	A	1.578148	A	0.720060333780629	0	lncRNA	11535-1_{1..823}	lnc-C2orf42-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2orf42-2:2	chr2	 70322091	 70322913	-	lnc-C2orf42-2	lnc-C2orf42-2:2	XLOC_002151	linc-ASPRV1-2	PCBP1	NA	chr2:70314585-70316335	inter
CUST_247_PI429285431	3.7496536	P	3.8826196	P	0.911954657305703	0	lncRNA	239-1_{1..530}	"transcript_id ""ENST00000447329.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447329.1"" | genecode_v17"	chr1	 59486059	 59486588	+	ENSG00000230812.1	ENST00000447329.1	RP4-794H19.4	RP4-794H19.4-002	NA	NA	NA	inter
CUST_48567_PI429285431	7.527034	P	7.556025	P	0.980105529539259	0	lncRNA	52415-1_{1..403}	hg19_lincRNAsTranscripts_TCONS_l2_00013422 range=chr2:741967-749843 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013422 range=chr2:741967-749843 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	   741967	   742369	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33187_PI429285431	4.3902884	P	4.453641	P	0.957037526101067	0	lncRNA	34779-1_{1..1738}	n339878|BC037915|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2326|NULL|-0.2609180|-0.2683600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339878|BC037915|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2326|NULL|-0.2609180|-0.2683600	chr4	 17654041	 17655778	+	NA	NA	NA	NA	FAM184B	"hg19_refFlat_FAM184B:range=chr4:17634155-177829225'pad=0,hg19_refFlat_FAM184B:range=chr4:17634155-177829225'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10chr4:17644041-17665762"	NA	inner
CUST_29458_PI429285431	5.3961225	P	5.741186	P	0.787273324092504	0	lncRNA	31216-1_{1..511}	n332864|AF085910|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066789|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066789|-1.4040000|-0.2168935	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332864|AF085910|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066789|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066789|-1.4040000|-0.2168935	chr15	 63133189	 63133699	+	NA	NA	NA	NA	TLN2	NA	chr15:63123189-63136830	inner
CUST_41267_PI429285431	3.0900302	P	2.2776468	A	1.75611022412128	0	lncRNA	42232-1_{1..78}	ENST00000362154 ncrna:miRNA chromosome:GRCh37:20:3898141:3898218:1 gene:ENSG00000199024 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362154 ncrna:miRNA chromosome:GRCh37:20:3898141:3898218:1 gene:ENSG00000199024 gene_biotype:miRNA transcript_biotype:miRNA	chr20	  3898141	  3898218	+	ENSG00000199024	ENST00000362154	NA	NA	PANK2	NA	chr20:3888141-3904502	inner
CUST_9341_PI429285431	1.925769	A	2.763942	A	0.559351472165118	0	lncRNA	10847-1_{1..303}	lnc-AC112715.2.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC112715.2.1-3:1	chr2	238121902	238122204	+	lnc-AC112715.2.1-3	lnc-AC112715.2.1-3:1	XLOC_001908	linc-MLPH-4	NA	NA	NA	inter
CUST_51034_PI429285431	4.240573	P	4.333777	P	0.937438531378351	0	lncRNA	54676-1_{1..233}	hg19_lincRNAsTranscripts_TCONS_l2_00006698 range=chr13:19931515-19933464 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006698 range=chr13:19931515-19933464 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 19931515	 19931747	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34534_PI429285431	0.918164	A	0.904147	A	1.00976319607329	0	lncRNA	35996-1_{1..1761}	n341414|BC020930|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3884|NULL|-1.0689200|-0.3577806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341414|BC020930|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3884|NULL|-1.0689200|-0.3577806	chr8	 10660587	 10662347	-	NA	NA	NA	NA	PINX1	NA	chr8:10650587-10672320	inner
CUST_304_PI429285431	0.9111264	A	0.9150236	A	0.997302312125285	0	lncRNA	297-1_{1..1298}	"transcript_id ""ENST00000469312.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000469312.2"" | genecode_v17"	chr1	 87595448	 87596745	+	ENSG00000267272.1	ENST00000469312.2	RP5-1052I5.1	RP5-1052I5.1-009	NA	NA	NA	inter
CUST_21769_PI429285431	8.130773	P	8.698927	P	0.674479266263191	0	lncRNA	23379-1_{1..542}	lnc-TECRL-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TECRL-4:3	chr4	 63031232	 63031773	-	lnc-TECRL-4	lnc-TECRL-4:3	ENSG00000248692.1	RP11-84A1.3	NA	NA	NA	inter
CUST_17610_PI429285431	0.8956937	A	1.0177621	A	0.918869317687606	0	lncRNA	19333-1_{1..767}	lnc-PHF14-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHF14-3:1	chr7	 10746686	 10747452	+	lnc-PHF14-3	lnc-PHF14-3:1	XLOC_005985	linc-PHF14-1	NA	NA	NA	inter
CUST_5906_PI429285431	1.1875745	A	0.9050379	A	1.21633160481396	0	lncRNA	5837-1_{1..585}	"transcript_id ""ENST00000571972.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000571972.1"" | genecode_v17"	chr17	 53920038	 53920622	-	ENSG00000262052.1	ENST00000571972.1	RP11-763E3.1	RP11-763E3.1-001	NA	NA	NA	inter
LNCA_21_P0013762	0.92325467	A	0.90921164	A	1.00978141501241	0	lncRNA	TCONS_l2_00030196	NA	NA	NA	NA	XLOC_l2_015512	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015512), lincRNA [TCONS_l2_00030196]"	chrX:48306755-48306814	hs|Xp11.23	Agilent_HUMAN_G3V2	TCONS_l2_00030196	TCONS_l2_00030196	chrX	 48306755	 48306814	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30988_PI429285431	15.943312	P	15.577558	P	1.28855489483621	0	lncRNA	32776-1_{1..649}	n337151|AF399542|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383959|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383959|5.5736800|-0.1055078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337151|AF399542|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383959|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383959|5.5736800|-0.1055078	chr19	 14951839	 14952487	-	NA	NA	NA	NA	OR7A10	NA	chr19:14951760-14952689	inner
CUST_4758_PI429285431	0.9258649	A	1.0710621	A	0.904255767636617	0	lncRNA	4703-1_{1..885}	"transcript_id ""ENST00000551588.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551588.1"" | genecode_v17"	chr14	 29299454	 29300338	+	ENSG00000258038.1	ENST00000551588.1	CTD-2384A14.1	CTD-2384A14.1-001	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50"	NA	inter
CUST_19779_PI429285431	2.762949	A	3.0584345	A	0.814798087999196	0	lncRNA	21437-1_{1..356}	lnc-SPRED2-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPRED2-6:2	chr2	 66667357	 66667712	-	lnc-SPRED2-6	lnc-SPRED2-6:2	ENSG00000244522.1	MEIS1-AS1	MEIS1	NA	chr2:66662532-66677470	inner
LNCA_21_P0006956	0.9236377	A	0.91044545	A	1.0091861065482	0	lncRNA	TCONS_00018416	NA	NA	NA	NA	XLOC_008700	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008700), lincRNA [TCONS_00018416]"	chr10:4242974-4242915	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_00018416	TCONS_00018416	chr10	  4242915	  4242974	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_318_PI429285431	0.91486657	A	1.0730804	A	0.896133868651595	0	lncRNA	309-1_{1..176}	"transcript_id ""ENST00000456551.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456551.1"" | genecode_v17"	chr1	 95123481	 95123656	-	ENSG00000224081.3	ENST00000456551.1	RP11-86H7.1	RP11-86H7.1-008	NA	NA	NA	inter
CUST_13215_PI429285431	2.338689	A	2.8207073	A	0.715975288687547	0	lncRNA	14843-1_{1..809}	lnc-VGLL3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VGLL3-3:1	chr3	 86271854	 86272662	-	lnc-VGLL3-3	lnc-VGLL3-3:1	XLOC_003175	linc-GBE1-3	NA	NA	NA	inter
CUST_33264_PI429285431	1.3171743	A	0.9047453	A	1.33092474621378	0	lncRNA	34850-1_{1..1207}	n339972|BC042078|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2425|NULL|-0.9562630|-0.3808734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339972|BC042078|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2425|NULL|-0.9562630|-0.3808734	chr4	 42708123	 42709329	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7857_PI429285431	0.9012541	A	0.8973022	A	1.00274300351159	0	lncRNA	9480-1_{1..3000}	lnc-C2orf69-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C2orf69-3:5	chr2	200341200	200344199	+	lnc-C2orf69-3	lnc-C2orf69-3:5	ENSG00000225953	AC017096.1	SATB2	NA	chr2:200331200-200335989	inter
CUST_44654_PI429285431	2.2844443	A	3.1972299	A	0.531158523252054	0	lncRNA	49216-1_{1..1606}	"gi|374349245|ref|NR_046229.1| Homo sapiens uncharacterized LOC100508120 (LOC100508120), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|374349245|ref|NR_046229.1| Homo sapiens uncharacterized LOC100508120 (LOC100508120), non-coding RNA"	Chr6	  2245987	  2247592	+	100508120	NR_046229.1	NA	NA	NA	NA	NA	inter
CUST_10161_PI429285431	6.4797826	P	6.55382	P	0.949975755664851	0	lncRNA	11686-1_{1..1531}	lnc-C12orf42-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C12orf42-3:1	chr12	103344367	103345897	-	lnc-C12orf42-3	lnc-C12orf42-3:1	XLOC_010176	linc-PAH-1	ASCL1	NA	chr12:103351452-103354294	inter
CUST_7382_PI429285431	0.9178515	A	1.4451184	A	0.693867981374848	0	lncRNA	9028-1_{1..1044}	lnc-NRG2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NRG2-1:6	chr5	139486684	139487727	-	lnc-NRG2-1	lnc-NRG2-1:6	ENSG00000245146	CTB-131B5.4	PURA	NA	chr5:139493708-139497051	inter
CUST_28342_PI429285431	1.0485983	A	0.90058255	A	1.10804444439555	0	lncRNA	29988-1_{1..692}	n325648|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045530|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045530|-1.2871600|-0.3403270	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325648|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045530|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045530|-1.2871600|-0.3403270	chr13	 97125265	 97125956	-	NA	NA	NA	NA	HS6ST3	NA	chr13:97115265-97138218	inner
CUST_47142_PI429285431	4.7531767	P	4.467362	P	1.21909850279815	0	lncRNA	51223-1_{1..788}	"gi|410170751|ref|XR_132658.3| PREDICTED: Homo sapiens uncharacterized LOC400706 (LOC400706), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170751|ref|XR_132658.3| PREDICTED: Homo sapiens uncharacterized LOC400706 (LOC400706), misc_RNA"	NA	NA	NA	NA	NA	XR_132658.3	NA	NA	NA	NA	NA	Unknown
CUST_5149_PI429285431	3.7579353	P	3.4576788	P	1.23136332074192	0	lncRNA	5089-1_{1..583}	"transcript_id ""ENST00000559992.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559992.1"" | genecode_v17"	chr15	 38285610	 38286192	+	ENSG00000259225.2	ENST00000559992.1	RP11-1008C21.1	RP11-1008C21.1-001	NA	NA	NA	inter
CUST_7135_PI429285431	2.5865254	A	2.171502	A	1.3333203028965	0	lncRNA	7071-1_{1..518}	"transcript_id ""ENST00000455570.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455570.1"" | genecode_v17"	chrY	  6338814	  6339331	-	ENSG00000185700.6	ENST00000455570.1	TTTY8B	TTTY8B-002	NA	NA	NA	inter
CUST_5649_PI429285431	0.90373576	A	1.1676314	A	0.832836013426897	0	lncRNA	5577-1_{1..1088}	"transcript_id ""ENST00000501068.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000501068.2"" | genecode_v17"	chr16	 81110924	 81112011	+	ENSG00000245059.2	ENST00000501068.2	RP11-303E16.7	RP11-303E16.7-001	C16orf46	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00chr16:81100924-81110872"	NA	inter
CUST_38846_PI429285431	6.055621	P	5.8163753	P	1.18037535153343	0	lncRNA	39838-1_{1..2014}	n384673|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jzw.2||2.0158200|-0.3081467	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384673|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jzw.2||2.0158200|-0.3081467	chr5	 70015685	 70017698	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5503_PI429285431	0.9278932	A	0.9503791	A	0.984534795518393	0	lncRNA	5435-1_{1..560}	"transcript_id ""ENST00000567464.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567464.1"" | genecode_v17"	chr16	 33336283	 33336842	-	ENSG00000260626.1	ENST00000567464.1	RP11-23E10.3	RP11-23E10.3-001	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00"	NA	inter
CUST_27505_PI429285431	6.529488	P	6.55703	P	0.981090412900318	0	lncRNA	29076-1_{1..451}	n324683|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320736|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320736|-1.3348100|-0.3267277	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324683|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320736|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320736|-1.3348100|-0.3267277	chr22	 26442467	 26442917	+	NA	NA	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.00"	NA	inter
CUST_42512_PI429285431	0.9236117	A	0.9194508	A	1.00288827916773	0	lncRNA	45296-1_{1..138}	ENST00000362945 ncrna:snoRNA chromosome:GRCh37:3:8973179:8973316:1 gene:ENSG00000199815 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362945 ncrna:snoRNA chromosome:GRCh37:3:8973179:8973316:1 gene:ENSG00000199815 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	  8973179	  8973316	+	ENSG00000199815	ENST00000362945	NA	NA	RAD18	NA	chr3:8963179-8983316	inner
CUST_17711_PI429285431	3.4311662	P	3.436248	P	0.996483761155478	0	lncRNA	19442-1_{1..355}	lnc-AACS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AACS-2:1	chr12	125638466	125638820	+	lnc-AACS-2	lnc-AACS-2:1	XLOC_009932	linc-TMEM132B-2	NA	NA	NA	inter
LNCA_21_P0003263	1.8326142	A	0.9265293	A	1.87395316926277	0	lncRNA	ENST00000442937	XR_108515	XR_108515	NA	NA	XLOC_002931	NA	ENST00000442937	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505566, transcript variant 1 (LOC100505566), miscRNA [XR_108515]"	chr3:177257214-177257273	hs|3q26.32	Agilent_HUMAN_G3V2	ENST00000442937	ENST00000442937	chr3	177257214	177257273	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014623	3.2886894	P	4.654466	P	0.388025507878549	0	lncRNA	XR_110597	XR_110597	XR_110597	NA	NA	LOC100505616	uncharacterized LOC100505616	NA	THC2520638	NA	"PREDICTED: Homo sapiens hypothetical LOC100505616, transcript variant 2 (LOC100505616), miscRNA [XR_110597]"	chr15:83425862-83425921	hs|15q25.2	Agilent_HUMAN_G3V2	XR_110597	XR_110597	chr15	 83425862	 83425921	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9643_PI429285431	1.7083049	A	2.656321	A	0.518344765921253	0	lncRNA	11161-1_{1..206}	lnc-GCA-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GCA-3:1	chr2	164175184	164175389	+	lnc-GCA-3	lnc-GCA-3:1	XLOC_001733	linc-SCN2A-3	NA	NA	NA	inter
CUST_23197_PI429285431	4.066365	P	4.3723063	P	0.808914260584884	0	lncRNA	24769-1_{1..214}	lnc-CALCOCO2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALCOCO2-5:2	chr17	 46711913	 46712126	+	lnc-CALCOCO2-5	lnc-CALCOCO2-5:2	ENSG00000242207.1	HOXB-AS4	HOXB9	NA	chr17:46701913-46703835	inter
CUST_20036_PI429285431	0.9077913	A	0.90471435	A	1.00213505520859	0	lncRNA	21687-1_{1..158}	lnc-CLDN25-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLDN25-1:1	chr11	113693157	113693314	+	lnc-CLDN25-1	lnc-CLDN25-1:1	ENSG00000256452.1	RP11-667M19.10	USP28	NA	chr11:113683157-113703180	inner
CUST_36039_PI429285431	1.4468454	A	1.5315459	A	0.942980276023785	0	lncRNA	37362-2_{3001..6000}	n344643|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_191|NULL|-1.3262900|-0.2857767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344643|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_191|NULL|-1.3262900|-0.2857767	chr2	216478716	216481715	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_TBX1:range=chr22:19747167-197543905'pad=0,hg19_refFlat_TBX1:range=chr22:19747167-197543905'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40"	NA	inter
CUST_26882_PI429285431	5.988455	P	5.9595413	P	1.02024362787588	0	lncRNA	28399-1_{1..1887}	n323957|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054579|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054579|-0.2667890|-0.2691841	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323957|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054579|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054579|-0.2667890|-0.2691841	chr9	131290644	131292530	+	NA	NA	NA	NA	SPTAN1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80chr9:131314837-131316374"	NA	inner
CUST_5322_PI429285431	2.1225002	A	2.412668	A	0.817806933822188	0	lncRNA	5261-1_{1..376}	"transcript_id ""ENST00000554261.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554261.1"" | genecode_v17"	chr15	 94442492	 94442867	-	ENSG00000258754.3	ENST00000554261.1	CTD-3049M7.1	CTD-3049M7.1-005	NA	NA	NA	inter
CUST_10992_PI429285431	0.91731393	A	0.92133945	A	0.997213611368756	0	lncRNA	12536-1_{1..447}	lnc-AMY1B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AMY1B-3:1	chr1	106161481	106161927	-	lnc-AMY1B-3	lnc-AMY1B-3:1	XLOC_000948	linc-AMY1A-2	NA	NA	NA	inter
LNCA_21_P0012811	0.9976598	A	0.9516225	A	1.0324252278625	0	lncRNA	ENST00000513660	NA	NA	NA	NA	XLOC_l2_011322	NA	ENST00000513660	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011322), lincRNA [TCONS_l2_00022036]"	chr4:156208250-156207586	hs|4q32.1	Agilent_HUMAN_G3V2	ENST00000513660	ENST00000513660	chr4	156207586	156208250	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1471_PI429285431	0.9478854	A	0.92098683	A	1.01881956505336	0	lncRNA	1458-2_{3001..3945}	"transcript_id ""ENST00000563865.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563865.1"" | genecode_v17"	chr3	139400462	139401406	-	ENSG00000261763.1	ENST00000563865.1	RP11-442N1.2	RP11-442N1.2-001	NMNAT3	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30chr3:139387462-139396885"	NA	inter
CUST_2297_PI429285431	0.9255233	A	0.91460556	A	1.00759630735708	0	lncRNA	2290-1_{1..789}	"transcript_id ""ENST00000522464.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522464.1"" | genecode_v17"	chr5	104308988	104309776	-	ENSG00000253584.1	ENST00000522464.1	CTD-2374C24.1	CTD-2374C24.1-002	NA	NA	NA	inter
CUST_8028_PI429285431	1.033548	A	0.934158	A	1.07132039130699	0	lncRNA	9637-1_{1..720}	lnc-FDX1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FDX1-1:2	chr11	110276968	110277687	+	lnc-FDX1-1	lnc-FDX1-1:2	ENSG00000254416	RP11-347E10.1	NA	NA	NA	inter
CUST_10788_PI429285431	1.7598583	A	1.3811507	A	1.30017660494267	0	lncRNA	12324-1_{1..2482}	lnc-MGAT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,UCSC,"	>lnc-MGAT1-2:1	chr5	180257072	180259553	-	lnc-MGAT1-2	lnc-MGAT1-2:1	XLOC_005110	linc-MGAT1-2	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10"	NA	inter
CUST_43409_PI429285431	7.768228	P	7.861117	P	0.937643235330824	0	lncRNA	48221-1_{1..758}	"gi|198041944|ref|NR_024127.1| Homo sapiens small nucleolar RNA host gene 12 (non-protein coding) (SNHG12), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|198041944|ref|NR_024127.1| Homo sapiens small nucleolar RNA host gene 12 (non-protein coding) (SNHG12), non-coding RNA"	Chr1	 28905050	 28905807	-	85028	NR_024127.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001483	4.171043	P	4.126844	P	1.03111053654696	0	lncRNA	TCONS_00001436	NA	NA	NA	NA	XLOC_000751	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000751), lincRNA [TCONS_00001436]"	chr1:26326331-26326272	hs|1p36.11	Agilent_HUMAN_G3V2	TCONS_00001436	TCONS_00001436	chr1	 26326272	 26326331	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26474_PI429285431	8.039971	P	8.256476	P	0.860647875003975	0	lncRNA	27982-1_{1..369}	lnc-GPRC5A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPRC5A-1:1	chr12	 13116212	 13116580	+	lnc-GPRC5A-1	lnc-GPRC5A-1:1	ENSG00000256011.1	RP11-392P7.7	NA	NA	NA	inter
LNCA_21_P0014702	2.804791	A	1.3606248	A	2.72105515519869	0	lncRNA	XR_111985	XR_111985	XR_111985	NA	NA	LOC100509205	uncharacterized LOC100509205	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100509205 (LOC100509205), miscRNA [XR_111985]"	chr1:180918888-180918829	hs|1q25.3	Agilent_HUMAN_G3V2	XR_111985	XR_111985	chr1	180918829	180918888	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29387_PI429285431	0.9674411	A	0.91575295	A	1.03647703405457	0	lncRNA	31139-1_{1..706}	n332689|AB087877|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061460|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061460|-1.0026700|-0.1953390	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332689|AB087877|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061460|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061460|-1.0026700|-0.1953390	chr14	106321998	106322703	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10980_PI429285431	1.1792219	A	1.4015448	A	0.857184162582371	0	lncRNA	12524-1_{1..1403}	lnc-SEPT7-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEPT7-1:7	chr7	 35773936	 35775338	+	lnc-SEPT7-1	lnc-SEPT7-1:7	XLOC_006043	linc-SEPT7-1	NA	NA	NA	inter
LNCA_21_P0008881	1.0278857	A	0.9857004	A	1.02967232623243	0	lncRNA	XR_109289	XR_109289	XR_109289	NA	Hs.642248	LOC100507221	uncharacterized LOC100507221	NA	THC2606424	NA	"PREDICTED: Homo sapiens hypothetical LOC100507221 (LOC100507221), miscRNA [XR_109289]"	chr16:32274290-32274231	hs|16p11.2	Agilent_HUMAN_G3V2	XR_109289	XR_109289	chr16	 32274231	 32274290	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19461_PI429285431	0.9865365	A	0.9293618	A	1.04042624703456	0	lncRNA	21120-1_{1..488}	lnc-ITGA7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITGA7-1:1	chr12	 56053497	 56053984	-	lnc-ITGA7-1	lnc-ITGA7-1:1	ENSG00000258921.1	RP11-644F5.16	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.71;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-61.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.20"	NA	inter
CUST_12550_PI429285431	0.92355365	A	0.9138379	A	1.00675717208244	0	lncRNA	14161-1_{1..462}	lnc-ANXA1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANXA1-2:1	chr9	 76043955	 76044416	+	lnc-ANXA1-2	lnc-ANXA1-2:1	XLOC_007402	linc-RORB-7	NA	NA	NA	inter
CUST_14916_PI429285431	6.1573586	P	6.467084	P	0.806795308588044	0	lncRNA	16578-1_{1..555}	lnc-PHOX2B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHOX2B-2:2	chr4	 41884497	 41885051	-	lnc-PHOX2B-2	lnc-PHOX2B-2:2	XLOC_003937	linc-PHOX2B-2	NA	NA	NA	inter
CUST_8180_PI429285431	5.932113	P	6.1572337	P	0.855523447146011	0	lncRNA	9780-1_{1..764}	lnc-KIAA1755-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1755-5:2	chr20	 37063670	 37064433	-	lnc-KIAA1755-5	lnc-KIAA1755-5:2	ENSG00000196756	RP4-564F22.2	NA	NA	NA	inter
CUST_1106_PI429285431	2.098288	A	2.311856	A	0.862401743575847	0	lncRNA	1095-1_{1..636}	"transcript_id ""ENST00000596589.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596589.1"" | genecode_v17"	chr2	145425654	145426289	+	ENSG00000226674.3	ENST00000596589.1	AC074093.1	AC074093.1-027	NA	NA	NA	inter
CUST_31914_PI429285431	4.661344	P	4.9758606	P	0.804120380091336	0	lncRNA	33644-1_{1..720}	n338469|BC036922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|866|NULL|1.5457300|-0.1918788	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338469|BC036922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|866|NULL|1.5457300|-0.1918788	chr14	 96967984	 96968703	-	NA	NA	NA	NA	PAPOLA	NA	chr14:96968720-96978630	inter
CUST_8447_PI429285431	2.0621698	A	1.9154172	A	1.10707472192583	0	lncRNA	10016-1_{1..840}	lnc-SLITRK6-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK6-9:2	chr13	 88323091	 88323930	-	lnc-SLITRK6-9	lnc-SLITRK6-9:2	ENSG00000228824	XLOC_010683	SLITRK5	NA	chr13:88324870-88331871	inter
CUST_46095_PI429285431	0.9104885	A	0.90451473	A	1.00414928638325	0	lncRNA	50361-1_{1..1737}	"gi|336594964|ref|NR_038930.1| Homo sapiens uncharacterized LOC100507250 (LOC100507250), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|336594964|ref|NR_038930.1| Homo sapiens uncharacterized LOC100507250 (LOC100507250), non-coding RNA"	Chr12	 69068151	 69069887	-	100507250	NR_038930.1	NA	NA	NA	NA	NA	inter
CUST_24695_PI429285431	3.6943164	P	1.5172209	A	4.52242162280292	0	lncRNA	26241-2_{3001..3372}	lnc-AC003682.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC003682.1-1:1	chr19	 58074024	 58074395	-	lnc-AC003682.1-1	lnc-AC003682.1-1:1	ENSG00000105132.8	ZNF550	ZNF550	NA	chr19:58061024-58067725	inter
CUST_41062_PI429285431	11.22933	P	11.077213	P	1.11119884124929	0	lncRNA	41722-1_{1..2328}	n411754|NR_045090|lncRNA|Homosapiens||RefGeneNoncode|NR_045090||3.2048300|-0.1713475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411754|NR_045090|lncRNA|Homosapiens||RefGeneNoncode|NR_045090||3.2048300|-0.1713475	chr20	 62496580	 62498907	+	NA	NA	NA	NA	TPD52L2	NA	chr20:62496590-62522891	inner
CUST_30649_PI429285431	1.0451471	A	0.91196585	A	1.09670936273996	0	lncRNA	32431-1_{1..441}	n336028|X81751|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323880|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323880|3.1294700|-0.0851770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336028|X81751|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323880|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323880|3.1294700|-0.0851770	chr14	106329408	106329848	-	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106859077	inter
CUST_24308_PI429285431	0.90246725	A	0.8993441	A	1.00216714749391	0	lncRNA	25859-1_{1..486}	lnc-MDM4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MDM4-4:1	chr1	204404760	204405245	+	lnc-MDM4-4	lnc-MDM4-4:1	ENSG00000226330.1	RP11-739N20.2	PIK3C2B	NA	chr1:204394760-204414974	inner
CUST_45518_PI429285431	5.094729	P	4.49686	P	1.51347935935248	0	lncRNA	49927-1_{1..2427}	"gi|224809580|ref|NR_027322.1| Homo sapiens uncharacterized LOC283070 (LOC283070), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224809580|ref|NR_027322.1| Homo sapiens uncharacterized LOC283070 (LOC283070), non-coding RNA"	Chr10	 12875133	 12877559	+	283070	NR_027322.1	NA	NA	NA	NA	NA	inter
CUST_4991_PI429285431	1.0632668	A	1.3378749	A	0.826674849233461	0	lncRNA	4935-1_{1..2071}	"transcript_id ""ENST00000556697.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556697.1"" | genecode_v17"	chr14	101123587	101125657	+	ENSG00000196273.3	ENST00000556697.1	LINC00523	LINC00523-001	NA	NA	NA	inter
CUST_21694_PI429285431	5.863915	P	5.8222413	P	1.02930725464326	0	lncRNA	23305-1_{1..914}	lnc-ANKRD12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD12-1:1	chr18	  9182380	  9183293	+	lnc-ANKRD12-1	lnc-ANKRD12-1:1	ENSG00000265257.1	RP11-21J18.1	ANKRD12	NA	chr18:9172380-9192522	inner
CUST_22353_PI429285431	1.8215812	A	1.9263369	A	0.929962405260888	0	lncRNA	23947-1_{1..749}	lnc-SAP30-5:36	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:36	chr4	174457999	174458747	+	lnc-SAP30-5	lnc-SAP30-5:36	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174447999-174451378	inter
CUST_48661_PI429285431	3.2481	A	3.1845417	A	1.04504009849504	0	lncRNA	52505-1_{1..1441}	hg19_lincRNAsTranscripts_TCONS_l2_00013805 range=chr2:96455452-96464841 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013805 range=chr2:96455452-96464841 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 96455452	 96456892	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3022_PI429285431	1.5843928	A	0.91931236	A	1.58565668183365	0	lncRNA	3001-1_{1..723}	"transcript_id ""ENST00000518417.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518417.1"" | genecode_v17"	chr8	 19041184	 19041906	-	ENSG00000253557.1	ENST00000518417.1	RP11-1080G15.1	RP11-1080G15.1-003	SH2D4A	NA	chr8:19095947-19103187	inter
LNCA_21_P0007785	0.93058276	A	1.2194105	A	0.818566913900642	0	lncRNA	TCONS_00020975	NA	NA	NA	NA	XLOC_010244	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010244), lincRNA [TCONS_00020975]"	chr12:127221249-127215328	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020975	TCONS_00020975	chr12	127215328	127221249	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40758_PI429285431	1.0216961	A	1.3329325	A	0.805950757586561	0	lncRNA	41483-1_{1..3000}	n410477|NR_037625_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_2||0.6051280|-0.3281971	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410477|NR_037625_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_2||0.6051280|-0.3281971	chr6	  4170808	  4173807	+	NA	NA	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10"	NA	inter
CUST_15727_PI429285431	6.697911	P	6.910242	P	0.863141503818227	0	lncRNA	17412-1_{1..699}	lnc-CYS1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CYS1-2:1	chr2	 10176801	 10177499	-	lnc-CYS1-2	lnc-CYS1-2:1	XLOC_001984	linc-YWHAQ-1	KLF11	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20chr2:10183682-10187284"	NA	inter
CUST_14304_PI429285431	0.92120165	A	0.92017823	A	1.00070963235751	0	lncRNA	15964-1_{1..335}	lnc-PPP1R3B-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP1R3B-2:4	chr8	  9117538	  9117872	-	lnc-PPP1R3B-2	lnc-PPP1R3B-2:4	XLOC_006999	linc-PPP1R3B-6	NA	NA	NA	inter
CUST_25526_PI429285431	5.6459417	P	5.6569233	P	0.992417031800747	0	lncRNA	27056-1_{1..801}	lnc-CCPG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCPG1-1:1	chr15	 55611105	 55611905	-	lnc-CCPG1-1	lnc-CCPG1-1:1	ENSG00000225973.3	RP11-139H15.1	PIGB	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-21.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70chr15:55611133-55621359"	NA	inner
CUST_49154_PI429285431	3.7636707	P	3.1699932	A	1.50908858920157	0	lncRNA	52980-1_{1..539}	hg19_lincRNAsTranscripts_TCONS_l2_00020754 range=chr4:127484733-127485437 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020754 range=chr4:127484733-127485437 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	127484733	127485271	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17236_PI429285431	4.0244737	P	4.563772	P	0.688105509396497	0	lncRNA	18954-1_{1..668}	lnc-C8orf4-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C8orf4-2:3	chr8	 39984600	 39985267	+	lnc-C8orf4-2	lnc-C8orf4-2:3	XLOC_006780	linc-C8orf4-1	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20"	NA	inter
CUST_43588_PI429285431	6.7254367	P	6.4816976	P	1.18405746505304	0	lncRNA	48353-1_{1..748}	"gi|397138896|ref|XR_159110.1| PREDICTED: Homo sapiens uncharacterized LOC100996529, transcript variant 3 (LOC100996529), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138896|ref|XR_159110.1| PREDICTED: Homo sapiens uncharacterized LOC100996529, transcript variant 3 (LOC100996529), misc_RNA"	NA	NA	NA	NA	NA	XR_159110.1	NA	NA	NA	NA	NA	Unknown
CUST_24033_PI429285431	0.93348014	A	0.92329776	A	1.00708285358004	0	lncRNA	25585-1_{1..358}	lnc-BDNF-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BDNF-2:1	chr11	 27899049	 27899406	-	lnc-BDNF-2	lnc-BDNF-2:1	ENSG00000255496.1	RP11-587D21.4	NA	NA	NA	inter
CUST_34057_PI429285431	0.9318249	A	0.9340931	A	0.99842903881843	0	lncRNA	35587-1_{1..203}	n340876|U17617|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3341|NULL|-1.1689000|-0.2204391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340876|U17617|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3341|NULL|-1.1689000|-0.2204391	chr6	 21822766	 21822968	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7613_PI429285431	1.5003766	A	1.525334	A	0.982849619769044	0	lncRNA	9248-1_{1..586}	lnc-CRYBA4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:3	chr22	 27061421	 27062006	+	lnc-CRYBA4-1	lnc-CRYBA4-1:3	ENSG00000225783	XLOC_014192	NA	NA	NA	inter
LNCA_21_P0003077	0.97839624	A	2.0710268	A	0.468905608466241	0	lncRNA	TCONS_00006346	NA	NA	NA	NA	XLOC_002967	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002967), lincRNA [TCONS_00006346]"	chr3:189846831-189847099	hs|3q28	Agilent_HUMAN_G3V2	TCONS_00006346	TCONS_00006346	chr3	189846831	189847099	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31050_PI429285431	5.1462445	P	5.7109613	P	0.676088119100959	0	lncRNA	32840-1_{1..303}	n337273|BC127910|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389528|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389528|1.8783700|-0.0741784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337273|BC127910|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389528|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389528|1.8783700|-0.0741784	chr1	154918420	154918722	-	NA	NA	NA	NA	PBXIP1	NA	chr1:154916556-154928567	inner
CUST_22948_PI429285431	1.7340573	A	0.9667288	A	1.70211498451437	0	lncRNA	24524-1_{1..542}	lnc-RP11-778D12.2.1-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-778D12.2.1-4:6	chr8	107072609	107073150	-	lnc-RP11-778D12.2.1-4	lnc-RP11-778D12.2.1-4:6	ENSG00000251003.2	RP11-152P17.2	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
CUST_7474_PI429285431	1.7812978	A	2.5482178	A	0.587670750692303	0	lncRNA	9116-1_{1..3000}	lnc-TMEM53-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM53-1:1	chr1	 44967880	 44970879	-	lnc-TMEM53-1	lnc-TMEM53-1:1	ENSG00000250809	AL596225.1	RNF220	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30chr1:44957880-44979005"	NA	inner
CUST_15730_PI429285431	2.8104246	A	2.9179177	A	0.92819954794853	0	lncRNA	17415-1_{1..1337}	lnc-AC007405.7.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,UCSC,"	>lnc-AC007405.7.1-1:5	chr2	171634154	171635490	+	lnc-AC007405.7.1-1	lnc-AC007405.7.1-1:5	XLOC_001748	linc-GAD1-1	LOC285141	NA	chr2:171640296-171645195	inter
CUST_25791_PI429285431	0.9228875	A	1.2317873	A	0.807257139268409	0	lncRNA	27312-1_{1..583}	lnc-GPR172B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR172B-1:1	chr17	  4923244	  4923826	-	lnc-GPR172B-1	lnc-GPR172B-1:1	ENSG00000227495.1	AC109333.10	KIF1C	"hg19_refFlat_KIF1C:range=chr17:4903542-49274465'pad=0,hg19_refFlat_KIF1C:range=chr17:4903542-49274465'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40chr17:4913244-4931694"	NA	inner
CUST_42897_PI429285431	3.4570923	P	3.8476095	P	0.762856074814442	0	lncRNA	45990-1_{1..78}	ENST00000579969 ncrna:snoRNA chromosome:GRCh37:2:29149933:29150010:1 gene:ENSG00000265145 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579969 ncrna:snoRNA chromosome:GRCh37:2:29149933:29150010:1 gene:ENSG00000265145 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 29149933	 29150010	+	ENSG00000265145	ENST00000579969	NA	NA	WDR43	NA	chr2:29139933-29160010	inner
CUST_35970_PI429285431	1.0015706	A	0.93079084	A	1.05028419671495	0	lncRNA	37319-2_{3001..6000}	n344594|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_142|NULL|-1.3063300|-0.2426910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344594|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_142|NULL|-1.3063300|-0.2426910	chr13	 56113015	 56116014	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11048_PI429285431	0.9140841	A	0.9017313	A	1.00859906990131	0	lncRNA	12595-1_{1..285}	lnc-C14orf101-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf101-1:1	chr14	 56892906	 56893190	+	lnc-C14orf101-1	lnc-C14orf101-1:1	XLOC_010840	linc-C14orf101-4	NA	NA	NA	inter
CUST_10982_PI429285431	0.94946957	A	0.99101067	A	0.971616503263385	0	lncRNA	12526-1_{1..442}	lnc-MID1IP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MID1IP1-3:1	chrX	 38796386	 38796827	+	lnc-MID1IP1-3	lnc-MID1IP1-3:1	XLOC_007956	linc-ATP6AP2-5	NA	NA	NA	inter
CUST_42215_PI429285431	3.5430915	A	4.073293	P	0.692458012274344	0	lncRNA	44313-1_{1..80}	ENST00000579275 ncrna:miRNA chromosome:GRCh37:13:77460456:77460535:-1 gene:ENSG00000264908 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579275 ncrna:miRNA chromosome:GRCh37:13:77460456:77460535:-1 gene:ENSG00000264908 gene_biotype:miRNA transcript_biotype:miRNA	chr13	 77460456	 77460535	-	ENSG00000264908	ENST00000579275	NA	NA	KCTD12	NA	chr13:77454304-77460540	inner
CUST_9027_PI429285431	0.9265959	A	1.1500667	A	0.85650240356548	0	lncRNA	10555-1_{1..895}	lnc-CAPN13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CAPN13-1:1	chr2	 30863313	 30864207	-	lnc-CAPN13-1	lnc-CAPN13-1:1	ENSG00000248067	ENST00000501208	LCLAT1	"hg19_refFlat_LCLAT1:range=chr2:30682479-308634855'pad=0,hg19_refFlat_LCLAT1:range=chr2:30682479-308634855'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_LCLAT1:range=chr2:30748457-308634855'pad=0,hg19_refFlat_LCLAT1:range=chr2:30748457-308634855'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60chr2:30853313-30867091"	NA	inner
CUST_36690_PI429285431	1.2465569	A	3.6404636	P	0.19026647686035	0	lncRNA	37873-1_{1..1141}	n345180|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_729|NULL|-1.3056800|-0.0532734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345180|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_729|NULL|-1.3056800|-0.0532734	chr12	 52430962	 52432102	+	NA	NA	NA	NA	NR4A1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-60.20chr12:52420962-52447695"	NA	inner
CUST_23320_PI429285431	0.9090437	A	0.89805067	A	1.00764889220929	0	lncRNA	24891-1_{1..579}	lnc-CSRP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CSRP1-1:1	chr1	201642956	201643534	-	lnc-CSRP1-1	lnc-CSRP1-1:1	ENSG00000236390.1	RP11-25B7.1	NAV1	NA	chr1:201632956-201653272	inner
CUST_41588_PI429285431	1.9720415	A	2.7566557	A	0.580507173449364	0	lncRNA	42916-1_{1..120}	ENST00000577455 ncrna:miRNA chromosome:GRCh37:1:201688636:201688755:1 gene:ENSG00000264802 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577455 ncrna:miRNA chromosome:GRCh37:1:201688636:201688755:1 gene:ENSG00000264802 gene_biotype:miRNA transcript_biotype:miRNA	chr1	201688636	201688755	+	ENSG00000264802	ENST00000577455	NA	NA	NAV1	NA	chr1:201678636-201698755	inner
CUST_20619_PI429285431	4.247645	P	4.6474853	P	0.757942179479554	0	lncRNA	22258-1_{1..467}	lnc-C9orf139-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C9orf139-1:1	chr9	139947462	139947928	+	lnc-C9orf139-1	lnc-C9orf139-1:1	ENSG00000236394.1	RP11-229P13.15	NPDC1	NA	chr9:139937462-139940676	inner
CUST_2804_PI429285431	0.90904427	A	0.9114697	A	0.998320232425288	0	lncRNA	2788-1_{1..1286}	"transcript_id ""ENST00000458087.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000458087.3"" | genecode_v17"	chr7	 35756096	 35757381	+	ENSG00000227544.3	ENST00000458087.3	AC018647.3	AC018647.3-002	NA	NA	NA	inter
CUST_14851_PI429285431	2.2960868	A	3.0887547	A	0.577275578942618	0	lncRNA	16514-1_{1..235}	lnc-RP1-32I10.10.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP1-32I10.10.1-1:1	chr22	 44740317	 44740551	+	lnc-RP1-32I10.10.1-1	lnc-RP1-32I10.10.1-1:1	XLOC_014264	linc-PRR5-3	NA	NA	NA	inter
CUST_2365_PI429285431	0.9032294	A	0.9039525	A	0.999498910860855	0	lncRNA	2358-1_{1..381}	"transcript_id ""ENST00000457890.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457890.1"" | genecode_v17"	chr5	131514927	131515307	-	ENSG00000224015.1	ENST00000457890.1	AC063976.3	AC063976.3-001	NA	NA	NA	inter
LNCA_21_P0006493	0.9597274	A	1.6694554	A	0.611435405585599	0	lncRNA	TCONS_00017158	NA	NA	NA	NA	XLOC_007966	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007966), lincRNA [TCONS_00017158]"	chrX:45461714-45461773	hs|Xp11.3	Agilent_HUMAN_G3V2	TCONS_00017158	TCONS_00017158	chrX	 45461714	 45461773	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41349_PI429285431	8.123539	P	5.818991	P	4.9401265518992	0	lncRNA	42420-1_{1..96}	ENST00000385123 ncrna:miRNA chromosome:GRCh37:13:90883436:90883531:1 gene:ENSG00000207858 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385123 ncrna:miRNA chromosome:GRCh37:13:90883436:90883531:1 gene:ENSG00000207858 gene_biotype:miRNA transcript_biotype:miRNA	chr13	 90883436	 90883531	+	ENSG00000207858	ENST00000385123	NA	NA	NA	NA	NA	inter
CUST_51976_PI429285431	0.90006644	A	1.6342746	A	0.601147881258442	0	lncRNA	55516-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00016361 range=chr20:58658507-58676396 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016361 range=chr20:58658507-58676396 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 58658507	 58661506	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15693_PI429285431	1.4171821	A	1.1686593	A	1.18799008877642	0	lncRNA	17380-1_{1..2074}	lnc-ARHGAP5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGAP5-1:1	chr14	 32545664	 32547737	+	lnc-ARHGAP5-1	lnc-ARHGAP5-1:1	XLOC_010791	linc-ARHGAP5	ARHGAP5	NA	chr14:32546495-32555834	inter
CUST_43483_PI429285431	9.395378	P	8.993507	P	1.32122026216353	0	lncRNA	48278-2_{3001..6000}	"gi|313851014|ref|NR_037640.1| Homo sapiens HEATR8-TTC4 readthrough (HEATR8-TTC4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|313851014|ref|NR_037640.1| Homo sapiens HEATR8-TTC4 readthrough (HEATR8-TTC4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_037640.1	NA	NA	NA	NA	NA	Unknown
CUST_1356_PI429285431	6.079918	P	6.202465	P	0.918564542314985	0	lncRNA	1344-1_{1..553}	"transcript_id ""ENST00000472243.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000472243.2"" | genecode_v17"	chr3	 55644631	 55645183	+	ENSG00000240777.2	ENST00000472243.2	RP11-58O15.1	RP11-58O15.1-001	ERC2	NA	chr3:55634631-55657132	inner
CUST_39002_PI429285431	6.409875	P	5.9816895	P	1.34554020534736	0	lncRNA	39983-1_{1..1478}	n385302|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wde.2||-1.0975400|-0.4236484	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385302|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wde.2||-1.0975400|-0.4236484	chr7	143306174	143307651	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39902_PI429285431	4.4337153	P	4.4673867	P	0.976931017407106	0	lncRNA	40786-1_{1..934}	n406628|NR_024154|lncRNA|Homosapiens||RefGeneNoncode|NR_024154||3.9979400|-0.1954647	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406628|NR_024154|lncRNA|Homosapiens||RefGeneNoncode|NR_024154||3.9979400|-0.1954647	chr16	 77756410	 77757343	+	NA	NA	NA	NA	NUDT7	NA	chr16:77756411-77776154	inner
LNCA_21_P0010681	4.3281727	P	4.778968	P	0.731639413275978	0	lncRNA	TCONS_l2_00001916	NA	NA	NA	NA	XLOC_l2_001414	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001414), lincRNA [TCONS_l2_00001916]"	chr1:247996711-247996652	hs|1q44	Agilent_HUMAN_G3V2	TCONS_l2_00001916	TCONS_l2_00001916	chr1	247996652	247996711	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17959_PI429285431	3.8708544	P	4.4898725	P	0.651113925881418	0	lncRNA	19692-1_{1..400}	lnc-MYEOV-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYEOV-3:1	chr11	 69015828	 69016227	+	lnc-MYEOV-3	lnc-MYEOV-3:1	XLOC_009190	linc-MYEOV-1	NA	NA	NA	inter
CUST_28280_PI429285431	1.8134211	A	1.5899738	A	1.16752002914546	0	lncRNA	29915-1_{1..768}	n325574|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129993|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129993|-0.8436700|-0.1786219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325574|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129993|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129993|-0.8436700|-0.1786219	chr17	 13868537	 13869304	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47602_PI429285431	5.2229996	P	5.503652	P	0.823218666012244	0	lncRNA	51605-1_{1..2096}	"gi|221139782|ref|NR_026594.1| Homo sapiens family with sequence similarity 226, member B (non-protein coding) (FAM226B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|221139782|ref|NR_026594.1| Homo sapiens family with sequence similarity 226, member B (non-protein coding) (FAM226B), non-coding RNA"	NW_004070882.1	   466090	   468185	+	653687	NR_026594.1	NA	NA	NA	NA	NA	Unknown
CUST_14181_PI429285431	0.91196835	A	1.350467	A	0.737902111866162	0	lncRNA	15833-1_{1..659}	lnc-GTF2B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GTF2B-3:1	chr1	 88939787	 88940445	-	lnc-GTF2B-3	lnc-GTF2B-3:1	XLOC_000904	linc-SEP15-6	NA	NA	NA	inter
CUST_18113_PI429285431	0.8957759	A	1.304778	A	0.753144137032664	0	lncRNA	19847-1_{1..1031}	lnc-RNASEH2B-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNASEH2B-3:8	chr13	 51107329	 51108359	+	lnc-RNASEH2B-3	lnc-RNASEH2B-3:8	XLOC_010390	linc-RNASEH2B-1	NA	NA	NA	inter
CUST_5290_PI429285431	0.9164157	A	0.90842175	A	1.00555636354835	0	lncRNA	5230-1_{1..597}	"transcript_id ""ENST00000565938.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565938.1"" | genecode_v17"	chr15	 89584454	 89585050	+	ENSG00000260123.1	ENST00000565938.1	RP11-326A19.4	RP11-326A19.4-001	ABHD2	NA	chr15:89631381-89636050	inter
CUST_318_PI429201921	3.8043315	P	4.32111	P	0.698930785999994	0	lncRNA	214-2_{3001..6000}	TC02004868.hg.1	TCONS_l2_00016116-XLOC_l2_008483 // Broad TUCP // linc-IQCA1-1 chr2:-:237957241-237964810 // chr2 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr2:-:237957241-237964810	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00016116-XLOC_l2_008483	linc-IQCA1-1	chr2	237957241	237964810	-	NA	NA	NA	NA	CYP4Z1	NA	chr1:47552325-47583992	Unknown
CUST_50477_PI429285431	4.374328	P	4.6180854	P	0.844542891710287	0	lncRNA	54177-1_{1..486}	hg19_lincRNAsTranscripts_TCONS_l2_00030275 range=chrX:100699054-100702830 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030275 range=chrX:100699054-100702830 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	100699054	100699539	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2312_PI429285431	9.060603	P	10.700441	P	0.320892505336858	0	lncRNA	2304-1_{1..449}	"transcript_id ""ENST00000507565.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507565.1"" | genecode_v17"	chr5	111964297	111964745	+	ENSG00000250358.1	ENST00000507565.1	RP11-159K7.2	RP11-159K7.2-003	NA	NA	NA	inter
CUST_26889_PI429285431	3.2658048	A	3.5917764	P	0.797760943881734	0	lncRNA	28406-1_{1..395}	n323964|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054570|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054570|-0.6667470|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323964|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054570|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054570|-0.6667470|-1.0000000	chr9	131061161	131061555	+	NA	NA	NA	NA	TRUB2	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00chr9:131071396-131073681"	NA	inter
LNCA_21_P0014726	4.164697	P	4.6414638	P	0.718586232545002	0	lncRNA	XR_108630	XR_108630	XR_108630	NA	Hs.658327	LOC100507563	uncharacterized LOC100507563	NA	THC2602538	NA	"PREDICTED: Homo sapiens hypothetical LOC100507563 (LOC100507563), miscRNA [XR_108630]"	chr6:33600127-33600068	hs|6p21.31	Agilent_HUMAN_G3V2	XR_108630	XR_108630	chr6	 33600068	 33600127	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46619_PI429285431	6.5576596	P	7.7926626	P	0.424841616135101	0	lncRNA	50796-1_{1..591}	"gi|374717322|ref|NR_046287.1| Homo sapiens uncharacterized LOC100289092 (LOC100289092), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|374717322|ref|NR_046287.1| Homo sapiens uncharacterized LOC100289092 (LOC100289092), transcript variant 1, non-coding RNA"	Chr16	 28890278	 28890868	-	100289092	NR_046287.1	NA	NA	NA	"hg19_refFlat_ATP2A3:range=chr17:3828716-38675855'pad=0,hg19_refFlat_ATP2A3:range=chr17:3828716-38675855'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ATP2A1:range=chr16:28889993-289155265'pad=0,hg19_refFlat_ATP2A1:range=chr16:28889993-289155265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_ATP2A1:range=chr16:28889993-289150255'pad=0,hg19_refFlat_ATP2A1:range=chr16:28889993-289150255'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_ATP2A3:range=chr17:3828727-38675855'pad=0,hg19_refFlat_ATP2A3:range=chr17:3828727-38675855'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ATP2A3:range=chr17:3828672-38675855'pad=0,hg19_refFlat_ATP2A3:range=chr17:3828672-38675855'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_43519_PI429285431	1.7173702	A	3.606398	P	0.269988937358529	0	lncRNA	48303-1_{1..727}	"gi|310118618|ref|XR_110477.1| PREDICTED: Homo sapiens uncharacterized LOC100505940 (LOC100505940), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310118618|ref|XR_110477.1| PREDICTED: Homo sapiens uncharacterized LOC100505940 (LOC100505940), misc_RNA"	Chr1	 94798869	 94799595	+	100505940	XR_110477.2	NA	NA	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90"	NA	inter
LNCA_21_P0013799	0.9254216	A	0.90888375	A	1.01152911793791	0	lncRNA	U66048	NA	U66048	NA	NA	LOC100272228	uncharacterized LOC100272228	NA	THC2602433	NA	"BROAD Institute lincRNA (XLOC_l2_015641), lincRNA [TCONS_l2_00030391]"	chrX:149129190-149129249	hs|Xq28	Agilent_HUMAN_G3V2	U66048	U66048	chrX	149129190	149129249	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15778_PI429285431	0.92327064	A	0.9165472	A	1.00467120972281	0	lncRNA	17468-1_{1..670}	lnc-PDE6B-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE6B-1:5	chr4	   575913	   576582	+	lnc-PDE6B-1	lnc-PDE6B-1:5	XLOC_003411	linc-PDE6B	NA	NA	NA	inter
CUST_9222_PI429285431	1.5921153	A	1.8125623	A	0.858299462485557	0	lncRNA	10733-1_{1..488}	lnc-FBN2-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FBN2-2:8	chr5	127418427	127418914	-	lnc-FBN2-2	lnc-FBN2-2:8	ENSG00000245937	CTC-228N24.3	SLC12A2	NA	chr5:127419483-127428573	inter
CUST_47187_PI429285431	3.8005219	P	3.3942902	P	1.32521983317837	0	lncRNA	51262-1_{1..1252}	"gi|346227202|ref|NR_002938.3| Homo sapiens solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 pseudogene (LOC284379), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|346227202|ref|NR_002938.3| Homo sapiens solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 pseudogene (LOC284379), non-coding RNA"	Chr19	 54102885	 54104136	-	284379	NR_002938.3	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80"	NA	inter
CUST_13653_PI429285431	0.9743532	A	1.0543531	A	0.946057712301317	0	lncRNA	15291-1_{1..1530}	lnc-IFT74-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-IFT74-3:4	chr9	 25812619	 25814148	+	lnc-IFT74-3	lnc-IFT74-3:4	XLOC_007306	linc-IFT74-1	NA	NA	NA	inter
CUST_19080_PI429285431	2.3834958	A	2.4320624	A	0.966896518811659	0	lncRNA	20771-1_{1..724}	lnc-ULK4-7:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ULK4-7:4	chr3	 40494613	 40495336	-	lnc-ULK4-7	lnc-ULK4-7:4	ENSG00000223797	ENTPD3-AS1	RPL14	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_ENTPD3:range=chr3:40429549-404689995'pad=0,hg19_refFlat_ENTPD3:range=chr3:40429549-404689995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00chr3:40498801-40503859"	NA	inter
CUST_38876_PI429285431	3.479346	P	3.7359126	P	0.837077671408919	0	lncRNA	39863-1_{1..1029}	n384783|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003mie.2||2.4105400|-0.0636934	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384783|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003mie.2||2.4105400|-0.0636934	chr5	177378198	177379226	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20"	NA	inter
CUST_10580_PI429285431	0.9241607	A	1.077124	A	0.899401191275323	0	lncRNA	12110-1_{1..1049}	lnc-GPR26-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR26-4:7	chr10	125315927	125316975	+	lnc-GPR26-4	lnc-GPR26-4:7	XLOC_008652	linc-GPR26-3	NA	NA	NA	inter
CUST_50836_PI429285431	0.9109844	A	1.0586514	A	0.902709064928478	0	lncRNA	54481-1_{1..2732}	hg19_lincRNAsTranscripts_TCONS_l2_00005064 range=chr11:65593701-65601267 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005064 range=chr11:65593701-65601267 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	 65593701	 65596432	-	NA	NA	NA	NA	SNX32	NA	chr11:65601410-65611267	inter
CUST_29052_PI429285431	0.9242635	A	0.9299661	A	0.996055060686406	0	lncRNA	30781-1_{1..471}	n326542|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027494|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027494|-1.2235400|-0.3118399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326542|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027494|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027494|-1.2235400|-0.3118399	chr1	 84069891	 84070361	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4823_PI429285431	0.99928623	A	0.91792	A	1.05801950915096	0	lncRNA	4766-1_{1..548}	"transcript_id ""ENST00000556617.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000556617.1"" | genecode_v17"	chr14	 51921230	 51921777	-	ENSG00000258537.1	ENST00000556617.1	FRMD6-AS2	FRMD6-AS2-001	FRMD6	NA	chr14:51955855-52076670	inter
LNCA_33_P3403913	0.92321527	A	0.9085583	A	1.01021121972661	0	lncRNA	XR_133099	XR_133099	XR_133099	100653259	Hs.633945	LOC100653259	e3 ubiquitin-protein ligase HERC2-like	NA	THC2548215	NA	"PREDICTED: Homo sapiens e3 ubiquitin-protein ligase HERC2-like (LOC100653259), miscRNA [XR_133099]"	chr16:32177916-32177857	hs|16p11.2	Agilent_HUMAN_G3V2	XR_133099	XR_133099	chr16	 32177857	 32177916	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42772_PI429285431	9.613521	P	9.5111885	P	1.07350767074093	0	lncRNA	45755-1_{1..135}	ENST00000517198 ncrna:snoRNA chromosome:GRCh37:22:34100772:34100906:-1 gene:ENSG00000253007 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517198 ncrna:snoRNA chromosome:GRCh37:22:34100772:34100906:-1 gene:ENSG00000253007 gene_biotype:snoRNA transcript_biotype:snoRNA	chr22	 34100772	 34100906	-	ENSG00000253007	ENST00000517198	NA	NA	LARGE	NA	chr22:34090772-34110906	inner
CUST_14726_PI429285431	3.4358873	P	3.967892	P	0.691593061435644	0	lncRNA	16390-1_{1..873}	lnc-ZBTB44-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZBTB44-1:1	chr11	130087013	130087885	-	lnc-ZBTB44-1	lnc-ZBTB44-1:1	XLOC_009603	linc-PRDM10	ZBTB44	NA	chr11:130096572-130097479	inter
CUST_6644_PI429285431	2.4816015	A	2.7302675	A	0.841674316727319	0	lncRNA	6590-1_{1..414}	"transcript_id ""ENST00000412405.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412405.1"" | genecode_v17"	chr20	 11246764	 11247177	-	ENSG00000230990.1	ENST00000412405.1	RP4-734C18.1	RP4-734C18.1-001	NA	NA	NA	inter
CUST_2768_PI429285431	0.90791994	A	0.9030807	A	1.00335993754032	0	lncRNA	2751-1_{1..653}	"transcript_id ""ENST00000445093.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445093.1"" | genecode_v17"	chr7	 15105832	 15106484	+	ENSG00000227489.1	ENST00000445093.1	AC006458.3	AC006458.3-001	NA	NA	NA	inter
CUST_26850_PI429285431	1.6320714	A	1.3101469	A	1.24999688527133	0	lncRNA	28363-2_{3001..3116}	n323921|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055622|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055622|0.4184820|-0.2285106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323921|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055622|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055622|0.4184820|-0.2285106	chrX	  2546992	  2547107	+	NA	NA	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40"	NA	inter
CUST_28535_PI429285431	9.009861	P	9.133587	P	0.917814179164504	0	lncRNA	30207-1_{1..317}	n325884|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050408|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050408|-1.0262100|-0.3175666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325884|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050408|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050408|-1.0262100|-0.3175666	chr10	114638481	114638797	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28537_PI429285431	1.6862668	A	2.1486795	A	0.725771494723446	0	lncRNA	30209-1_{1..480}	n325886|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050244|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050244|-1.1233100|-0.1209103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325886|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050244|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050244|-1.1233100|-0.1209103	chr10	110460265	110460744	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45731_PI429285431	1.971849	A	1.6518074	A	1.24836654493548	0	lncRNA	50085-15_{42001..45000}	"gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	Chr11	  2671558	  2674557	-	10984	NR_002728.3	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.02;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0,hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_33046_PI429285431	5.123649	P	4.815165	P	1.23840568550068	0	lncRNA	34659-1_{1..3000}	n339737|BX641108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2183|NULL|-1.1488800|-0.3507352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339737|BX641108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2183|NULL|-1.1488800|-0.3507352	chr3	188604480	188607479	+	NA	NA	NA	NA	LPP	NA	chr3:188594480-188608460	inner
CUST_45063_PI429285431	0.9060913	A	1.7290269	A	0.565290516820701	0	lncRNA	49552-1_{1..3000}	"gi|253970408|ref|NR_028041.1| Homo sapiens glutamate receptor, metabotropic 8 (GRM8), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|253970408|ref|NR_028041.1| Homo sapiens glutamate receptor, metabotropic 8 (GRM8), transcript variant 3, non-coding RNA"	Chr7	126078652	126081651	-	2918	NR_028041.1	NA	NA	NA	NA	NA	inter
CUST_1735_PI429285431	0.9162047	A	0.91650385	A	0.999792666517493	0	lncRNA	1721-1_{1..279}	"transcript_id ""ENST00000513564.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513564.1"" | genecode_v17"	chr4	 34659228	 34659506	+	ENSG00000250597.1	ENST00000513564.1	RP11-725M22.1	RP11-725M22.1-002	NA	NA	NA	inter
CUST_28582_PI429285431	0.92184603	A	0.98403513	A	0.957809665924114	0	lncRNA	30262-1_{1..520}	n325943|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048932|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048932|-1.0724800|-0.2603013	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325943|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048932|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048932|-1.0724800|-0.2603013	chr10	 79723604	 79724123	+	NA	NA	NA	NA	POLR3A	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70chr10:79734907-79740766"	NA	inter
CUST_19605_PI429285431	2.4628408	A	1.8961217	A	1.48115138229962	0	lncRNA	21261-1_{1..441}	lnc-MAEA-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-MAEA-2:1	chr4	  1352894	  1353334	+	lnc-MAEA-2	lnc-MAEA-2:1	ENSG00000253399.1	AC078852.2	KIAA1530	NA	chr4:1342894-1363249	inner
CUST_26046_PI429285431	0.9151666	A	0.9189609	A	0.99737344709481	0	lncRNA	27561-1_{1..745}	lnc-FGFR4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FGFR4-1:1	chr5	176479395	176480139	+	lnc-FGFR4-1	lnc-FGFR4-1:1	ENSG00000251666.1	ZNF346-IT1	ZNF346	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40chr5:176469395-176489964"	NA	inner
LNCA_21_P0009944	0.9257735	A	0.9145603	A	1.00780268145773	0	lncRNA	TCONS_00028125	NA	NA	NA	NA	XLOC_013484	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013484), lincRNA [TCONS_00028125]"	chr20:22371447-22371506	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028125	TCONS_00028125	chr20	 22371447	 22371506	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32745_PI429285431	4.3250356	P	1.775505	A	5.8544376547935	0	lncRNA	34382-1_{1..2584}	n339370|AK095091|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1802|NULL|-0.4658300|-0.2936101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339370|AK095091|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1802|NULL|-0.4658300|-0.2936101	chr3	 53893019	 53895602	-	NA	NA	NA	NA	IL17RB	"hg19_refFlat_IL17RB:range=chr3:53880616-538993355'pad=0,hg19_refFlat_IL17RB:range=chr3:53880616-538993355'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.80chr3:53883019-53899827"	NA	inner
CUST_45833_PI429285431	2.6066785	A	3.5888708	P	0.506209925342139	0	lncRNA	50167-1_{1..1382}	"gi|399363257|ref|NR_073078.1| Homo sapiens cornichon homolog 2 (Drosophila) (CNIH2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|399363257|ref|NR_073078.1| Homo sapiens cornichon homolog 2 (Drosophila) (CNIH2), transcript variant 2, non-coding RNA"	Chr11	 66045672	 66047053	+	254263	NR_073078.1	NA	NA	NA	NA	NA	inter
CUST_27538_PI429285431	0.9156899	A	0.91489375	A	1.00055200142455	0	lncRNA	29113-1_{1..375}	n324722|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319605|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319605|0.0666194|-0.3033919	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324722|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319605|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319605|0.0666194|-0.3033919	chr22	 18974407	 18974781	+	NA	NA	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-23.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80"	NA	inter
CUST_397_PI429285431	0.9108572	A	0.9038633	A	1.00485957166977	0	lncRNA	389-1_{1..1410}	"transcript_id ""ENST00000447389.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447389.1"" | genecode_v17"	chr1	143188795	143190204	-	ENSG00000232274.2	ENST00000447389.1	RP11-782C8.2	RP11-782C8.2-003	NA	NA	NA	inter
CUST_37040_PI429285431	1.0641632	A	0.8986168	A	1.12159078397815	0	lncRNA	38178-1_{1..2638}	n345495|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1044|NULL|-1.3060200|-0.2580690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n345495|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1044|NULL|-1.3060200|-0.2580690	chr2	196346072	196348709	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50"	NA	inter
CUST_50964_PI429285431	16.197971	P	16.117655	P	1.05724958934662	0	lncRNA	54605-1_{1..303}	hg19_lincRNAsTranscripts_TCONS_l2_00006336 range=chr12:80496697-80497140 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006336 range=chr12:80496697-80497140 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 80496697	 80496999	-	NA	NA	NA	NA	OTOGL	NA	chr12:80496639-80507140	inter
CUST_44362_PI429285431	1.2924376	A	0.92363095	A	1.29128428077639	0	lncRNA	48981-2_{3001..4656}	"gi|402167320|ref|NR_073124.1| Homo sapiens non-SMC condensin I complex, subunit G (NCAPG), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402167320|ref|NR_073124.1| Homo sapiens non-SMC condensin I complex, subunit G (NCAPG), transcript variant 2, non-coding RNA"	Chr4	 17815436	 17817091	+	64151	NR_073124.1	NA	NA	NA	NA	NA	inter
CUST_30577_PI429285431	0.91912633	A	1.1161575	A	0.872343858231238	0	lncRNA	32359-1_{1..426}	n335821|X56510|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322024|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322024|2.3783200|-0.0722194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335821|X56510|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322024|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322024|2.3783200|-0.0722194	chr2	 89160083	 89160508	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002069	0.931069	A	0.9216224	A	1.00656936841589	0	lncRNA	XR_109949	XR_109949	XR_109949	NA	NA	LOC100507201	uncharacterized LOC100507201	ENST00000446580	THC2774395	NA	"PREDICTED: Homo sapiens hypothetical LOC100507201 (LOC100507201), miscRNA [XR_109949]"	chr2:81689878-81689819	hs|2p12	Agilent_HUMAN_G3V2	XR_109949	XR_109949	chr2	 81689819	 81689878	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20533_PI429285431	2.0629873	A	2.009556	A	1.03773012416214	0	lncRNA	22175-1_{1..1819}	lnc-DHRS7B-5:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DHRS7B-5:10	chr17	 20841406	 20843224	+	lnc-DHRS7B-5	lnc-DHRS7B-5:10	ENSG00000233098.3	RP11-344E13.3	NA	NA	NA	inter
CUST_16730_PI429285431	2.765325	A	3.1397164	A	0.771430771661087	0	lncRNA	18437-1_{1..676}	lnc-LY96-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-LY96-2:1	chr8	 75018904	 75019579	+	lnc-LY96-2	lnc-LY96-2:1	XLOC_006846	linc-GDAP1	NA	NA	NA	inter
CUST_1472_PI429285431	5.7786627	P	5.9161716	P	0.909087521340335	0	lncRNA	1459-1_{1..607}	"transcript_id ""ENST00000506934.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506934.1"" | genecode_v17"	chr3	139407245	139407851	-	ENSG00000250543.1	ENST00000506934.1	RP11-442N1.1	RP11-442N1.1-001	NA	NA	NA	inter
CUST_25992_PI429285431	1.5203099	A	0.9227183	A	1.51318837698834	0	lncRNA	27511-1_{1..1116}	lnc-SNURF-3:20	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SNURF-3:20	chr15	 25663935	 25665050	+	lnc-SNURF-3	lnc-SNURF-3:20	ENSG00000224078.4	SNHG14	SNRPN	NA	chr15:25653935-25664609	inner
LNCA_21_P0006592	0.95015085	A	0.9252577	A	1.01740433752244	0	lncRNA	ENST00000413486	NA	NA	NA	NA	XLOC_008286	NA	ENST00000413486	THC2785372	NA	"BROAD Institute lincRNA (XLOC_008286), lincRNA [TCONS_00017609]"	chrY:8513378-8513437	hs|Yp11.2	Agilent_HUMAN_G3V2	ENST00000413486	ENST00000413486	chrY	  8513378	  8513437	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52193_PI429285431	4.7496314	P	5.323763	P	0.67169043969406	0	lncRNA	55709-1_{1..1087}	hg19_lincRNAsTranscripts_TCONS_l2_00017670 range=chr22:25878885-25905492 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017670 range=chr22:25878885-25905492 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 25878885	 25879971	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37170_PI429285431	0.9261982	A	0.914407	A	1.00820652747998	0	lncRNA	38286-1_{1..3000}	n345605|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1154|NULL|-1.2960200|-0.2802895	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345605|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1154|NULL|-1.2960200|-0.2802895	chr3	160980939	160983938	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00"	NA	inter
CUST_52171_PI429285431	0.9176015	A	0.90761966	A	1.00694287503034	0	lncRNA	55692-1_{1..870}	hg19_lincRNAsTranscripts_TCONS_l2_00017979 range=chr22:24349937-24352852 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017979 range=chr22:24349937-24352852 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 24349937	 24350806	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34957_PI429285431	0.9158429	A	1.105454	A	0.876842055335659	0	lncRNA	36374-1_{1..1773}	n341875|BC067243|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4355|NULL|-1.1847200|-0.3656961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n341875|BC067243|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4355|NULL|-1.1847200|-0.3656961	chr6	 49783205	 49784977	-	NA	NA	NA	NA	CRISP1	NA	chr6:49801970-49802479	inter
CUST_39724_PI429285431	1.3199655	A	1.1963975	A	1.08942584614729	0	lncRNA	40654-2_{3001..3914}	n405665|NR_002833|lncRNA|Homosapiens||RefGeneNoncode|NR_002833||1.5638400|-0.4175826	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405665|NR_002833|lncRNA|Homosapiens||RefGeneNoncode|NR_002833||1.5638400|-0.4175826	chr7	 35132455	 35133368	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9263_PI429285431	0.9298353	A	0.9274125	A	1.00168076789871	0	lncRNA	10769-2_{3001..3858}	lnc-NOD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NOD1-1:1	chr7	 31253979	 31254836	-	lnc-NOD1-1	lnc-NOD1-1:1	ENSG00000251425	ENST00000507825	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60"	NA	inter
CUST_40584_PI429285431	1.6410965	A	1.6006328	A	1.02844432824552	0	lncRNA	41335-1_{1..895}	n410037|NR_036475|lncRNA|Homosapiens||RefGeneNoncode|NR_036475||1.5453200|-0.0945536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410037|NR_036475|lncRNA|Homosapiens||RefGeneNoncode|NR_036475||1.5453200|-0.0945536	chr15	 29033388	 29034282	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2656_PI429285431	1.5292237	A	1.1217893	A	1.32632506081447	0	lncRNA	2642-1_{1..554}	"transcript_id ""ENST00000417650.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417650.1"" | genecode_v17"	chr6	143271348	143271901	+	ENSG00000232618.1	ENST00000417650.1	RP11-439L18.1	RP11-439L18.1-001	HIVEP2	NA	chr6:143261348-143266338	inter
LNCA_21_P0010423	8.294282	P	8.620451	P	0.797651795910259	0	lncRNA	TCONS_00029837	NA	NA	NA	NA	XLOC_014272	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014272), lincRNA [TCONS_00029837]"	chr22:47604345-47604404	hs|22q13.31	Agilent_HUMAN_G3V2	TCONS_00029837	TCONS_00029837	chr22	 47604345	 47604404	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_800_PI429285431	5.912416	P	6.29554	P	0.766775422464656	0	lncRNA	793-1_{1..504}	"transcript_id ""ENST00000457901.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457901.1"" | genecode_v17"	chr2	 21444057	 21444560	+	ENSG00000233005.1	ENST00000457901.1	AC067959.1	AC067959.1-002	NA	NA	NA	inter
CUST_35339_PI429285431	1.218279	A	1.0358318	A	1.13480719275797	0	lncRNA	36748-2_{3001..3974}	n342380|BC040221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4872|NULL|3.4783000|-0.2534584	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342380|BC040221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4872|NULL|3.4783000|-0.2534584	chr2	   197492	   198465	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19684_PI429285431	4.028619	P	4.1948757	P	0.89115191834331	0	lncRNA	21341-1_{1..563}	lnc-C2orf42-3:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:13	chr2	 70313563	 70314125	-	lnc-C2orf42-3	lnc-C2orf42-3:13	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_11483_PI429285431	8.224291	P	8.287125	P	0.957381610514411	0	lncRNA	13051-1_{1..1682}	lnc-IL6-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL6-3:5	chr7	 22640579	 22642260	+	lnc-IL6-3	lnc-IL6-3:5	XLOC_006009	linc-IL6-1	NA	NA	NA	inter
CUST_13176_PI429285431	1.5210447	A	2.0217152	A	0.706778225998727	0	lncRNA	14803-1_{1..919}	lnc-KCNG2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNG2-1:2	chr18	 77616379	 77617297	+	lnc-KCNG2-1	lnc-KCNG2-1:2	XLOC_012735	linc-KCNG2	KCNG2	NA	chr18:77623668-77626419	inter
CUST_25305_PI429285431	6.020105	P	5.9415274	P	1.05597640564491	0	lncRNA	26835-1_{1..185}	lnc-PHACTR4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHACTR4-2:2	chr1	 28834640	 28834824	+	lnc-PHACTR4-2	lnc-PHACTR4-2:2	ENSG00000242125.1	SNHG3	RCC1	NA	chr1:28832455-28844782	inter
CUST_38013_PI429285431	2.966988	A	2.7878869	A	1.13217823918899	0	lncRNA	39098-2_{3001..3595}	n377586|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029951||0.3593180|-0.2815770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377586|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029951||0.3593180|-0.2815770	chr6	  4291782	  4292376	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.94;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30"	NA	inter
CUST_51950_PI429285431	9.597395	P	9.155067	P	1.3587951746087	0	lncRNA	55492-1_{1..377}	hg19_lincRNAsTranscripts_TCONS_l2_00016540 range=chr20:25755648-25762747 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016540 range=chr20:25755648-25762747 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	 25755648	 25756024	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35919_PI429285431	4.055314	P	3.9407136	P	1.08267512288904	0	lncRNA	37288-1_{1..3000}	n344563|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_111|NULL|-1.4073800|-0.2503648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344563|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_111|NULL|-1.4073800|-0.2503648	chr22	 27053225	 27056224	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32369_PI429285431	0.93361676	A	0.9284729	A	1.00357181584139	0	lncRNA	34046-1_{1..1705}	n338956|BC040925|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1384|NULL|-0.8468990|-0.1990669	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338956|BC040925|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1384|NULL|-0.8468990|-0.1990669	chr19	 56578049	 56579753	+	NA	NA	NA	NA	ZNF787	NA	chr19:56598732-56600167	inter
CUST_38452_PI429285431	7.2339983	P	7.3299575	P	0.935649958016966	0	lncRNA	39472-2_{3001..4778}	n382710|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bnt.2||-0.8513050|-0.1688713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n382710|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bnt.2||-0.8513050|-0.1688713	chr15	 89907809	 89909586	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41919_PI429285431	0.92127585	A	0.9091679	A	1.00842790793002	0	lncRNA	43664-1_{1..96}	ENST00000385268 ncrna:miRNA chromosome:GRCh37:15:81134319:81134414:-1 gene:ENSG00000208003 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385268 ncrna:miRNA chromosome:GRCh37:15:81134319:81134414:-1 gene:ENSG00000208003 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 81134319	 81134414	-	ENSG00000208003	ENST00000385268	NA	NA	KIAA1199	NA	chr15:81124319-81144414	inner
CUST_8554_PI429285431	1.0287637	A	0.9832842	A	1.03202613071417	0	lncRNA	10113-1_{1..907}	lnc-SNX10-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNX10-2:3	chr7	 26533415	 26534321	+	lnc-SNX10-2	lnc-SNX10-2:3	ENSG00000214870	AC004540.5	NA	NA	NA	inter
CUST_33968_PI429285431	7.4724054	P	7.6524215	P	0.88269314567182	0	lncRNA	35506-1_{1..1378}	n340777|BC037953|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3240|NULL|-1.0007700|-0.2156339	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340777|BC037953|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3240|NULL|-1.0007700|-0.2156339	chr5	179345910	179347287	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_193_PI429285431	2.584559	A	2.615372	A	0.978868521666584	0	lncRNA	183-1_{1..624}	"transcript_id ""ENST00000420776.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420776.1"" | genecode_v17"	chr1	 28969740	 28970363	+	ENSG00000229388.1	ENST00000420776.1	RP11-442N24__B.1	RP11-442N24__B.1-001	TAF12	NA	chr1:28959740-28969604	inter
CUST_38807_PI429285431	0.9225539	A	0.91340256	A	1.00636338638009	0	lncRNA	39800-1_{1..595}	n384545|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003isw.3||-0.8188650|-0.3188688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384545|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003isw.3||-0.8188650|-0.3188688	chr4	173551085	173551679	-	NA	NA	NA	NA	GALNTL6	NA	chr4:173541085-173595413	inner
CUST_4142_PI429285431	0.9971432	A	0.93101543	A	1.04690299517372	0	lncRNA	4101-1_{1..754}	"transcript_id ""ENST00000544717.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544717.1"" | genecode_v17"	chr12	  5343163	  5343916	-	ENSG00000256115.1	ENST00000544717.1	RP11-319E16.1	RP11-319E16.1-002	LOC100507271	NA	chr12:5343813-5347432	inter
CUST_9646_PI429285431	0.9940502	A	1.0547934	A	0.95877008456795	0	lncRNA	11164-1_{1..422}	lnc-PAPPA2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAPPA2-1:2	chr1	176198225	176198646	+	lnc-PAPPA2-1	lnc-PAPPA2-1:2	XLOC_000471	linc-PAPPA2-1	NA	NA	NA	inter
CUST_2997_PI429285431	1.4897487	A	1.8301184	A	0.789838884569711	0	lncRNA	2977-1_{1..863}	"transcript_id ""ENST00000520255.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520255.1"" | genecode_v17"	chr8	  9107114	  9107976	+	ENSG00000254235.1	ENST00000520255.1	RP11-115J16.1	RP11-115J16.1-003	NA	NA	NA	inter
CUST_36340_PI429285431	1.1303728	A	0.9533308	A	1.13056347981483	0	lncRNA	37570-1_{1..3000}	n344867|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_416|NULL|-1.7083400|-0.2971529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344867|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_416|NULL|-1.7083400|-0.2971529	chr6	  3983648	  3986647	-	NA	NA	NA	NA	NA	"hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0,hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60"	NA	inter
CUST_7305_PI429285431	6.539468	P	6.3742943	P	1.12130107417559	0	lncRNA	8433-1_{1..293}	"transcript_id ""ENST00000516688.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516688.1"" | genecode_v17"	chr14	 65376206	 65376498	-	ENSG00000252497.1	ENST00000516688.1	RPPH1-2P	RPPH1-2P-201	CHURC1-FNTB	NA	chr14:65381079-65386498	inter
CUST_30876_PI429285431	4.9818444	P	5.4922175	P	0.702040857348627	0	lncRNA	32664-1_{1..275}	n336884|AY743706|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332236|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332236|0.9830930|-0.2145101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336884|AY743706|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332236|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332236|0.9830930|-0.2145101	chr17	  2207237	  2207511	+	NA	NA	NA	NA	SMG6	NA	chr17:2197237-2207069	inner
CUST_2839_PI429285431	0.9200447	A	1.0390598	A	0.920816059412666	0	lncRNA	2823-1_{1..543}	"transcript_id ""ENST00000449899.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449899.1"" | genecode_v17"	chr7	 55661470	 55662012	+	ENSG00000231394.1	ENST00000449899.1	RP11-310H4.3	RP11-310H4.3-001	NA	NA	NA	inter
CUST_25980_PI429285431	1.4150307	A	1.958514	A	0.686112330843316	0	lncRNA	27500-1_{1..1187}	lnc-PLA2G15-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PLA2G15-2:1	chr16	 68233698	 68234884	+	lnc-PLA2G15-2	lnc-PLA2G15-2:1	ENSG00000262514.1	RP11-96D1.9	NFATC3	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80chr16:68223698-68244884"	NA	inner
LNCA_21_P0004547	4.742562	P	5.026116	P	0.821564642984036	0	lncRNA	TCONS_00010856	NA	NA	NA	NA	XLOC_004673	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004673), lincRNA [TCONS_00010856]"	chr5:177664484-177664543	hs|5q35.3	Agilent_HUMAN_G3V2	TCONS_00010856	TCONS_00010856	chr5	177664484	177664543	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16877_PI429285431	8.739368	P	8.660545	P	1.05615604073285	0	lncRNA	18584-1_{1..1225}	lnc-RASL10A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASL10A-1:1	chr22	 29715298	 29716522	-	lnc-RASL10A-1	lnc-RASL10A-1:1	XLOC_014336	linc-RASL10A	AP1B1	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80chr22:29723669-29725727"	NA	inter
CUST_29190_PI429285431	0.921359	A	0.91061735	A	1.00747333139813	0	lncRNA	30935-1_{1..438}	n326705|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000036896|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000036896|-0.9042530|-0.4145653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326705|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000036896|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000036896|-0.9042530|-0.4145653	chr1	 12510352	 12510789	+	NA	NA	NA	NA	VPS13D	NA	chr1:12500352-12521049	inner
CUST_39100_PI429285431	2.7152436	A	2.224004	A	1.40565212880736	0	lncRNA	40076-1_{1..410}	n385652|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azu.1||-1.1529200|-0.2188935	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385652|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azu.1||-1.1529200|-0.2188935	chr9	102121666	102122075	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14186_PI429285431	0.9153225	A	0.9100264	A	1.00367772307086	0	lncRNA	15838-1_{1..2559}	lnc-VSX1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-VSX1-1:8	chr20	 25128396	 25130954	-	lnc-VSX1-1	lnc-VSX1-1:8	XLOC_013704	linc-VSX1-2	NA	NA	NA	inter
CUST_36375_PI429285431	4.158424	P	3.8739486	P	1.21796729977101	0	lncRNA	37594-1_{1..1927}	n344892|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_441|NULL|-1.3242400|-0.3612201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344892|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_441|NULL|-1.3242400|-0.3612201	chr6	 29704792	 29706718	+	NA	NA	NA	NA	HLA-F	"hg19_refFlat_MICB:range=chr6_ssto_hap7:2796787-28084895'pad=0,hg19_refFlat_MICB:range=chr6_ssto_hap7:2796787-28084895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MICB:range=chr6_cox_hap2:2975640-29873575'pad=0,hg19_refFlat_MICB:range=chr6_cox_hap2:2975640-29873575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_IFITM3:range=chr11:319838-3208135'pad=0,hg19_refFlat_IFITM3:range=chr11:319838-3208135'pad=0 3'pad=0 strand=- repeatMasking=none,-101.70;hg19_refFlat_IFITM2:range=chr11:308193-3091655'pad=0,hg19_refFlat_IFITM2:range=chr11:308193-3091655'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.70;hg19_refFlat_MICB:range=chr6_apd_hap1:2780678-27923755'pad=0,hg19_refFlat_MICB:range=chr6_apd_hap1:2780678-27923755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MICB:range=chr6_mcf_hap5:2845733-28574435'pad=0,hg19_refFlat_MICB:range=chr6_mcf_hap5:2845733-28574435'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MICB:range=chr6_dbb_hap3:2751387-27632805'pad=0,hg19_refFlat_MICB:range=chr6_dbb_hap3:2751387-27632805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_IFITM1:range=chr11:314171-3151135'pad=0,hg19_refFlat_IFITM1:range=chr11:314171-3151135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MICB:range=chr6_qbl_hap6:2759690-27713915'pad=0,hg19_refFlat_MICB:range=chr6_qbl_hap6:2759690-27713915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MICB:range=chr6_mann_hap4:2816314-28206075'pad=0,hg19_refFlat_MICB:range=chr6_mann_hap4:2816314-28206075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MICB:range=chr6:31465971-314776865'pad=0,hg19_refFlat_MICB:range=chr6:31465971-314776865'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10chr6:29694792-29695073"	NA	inter
CUST_39940_PI429285431	2.9071367	P	2.7584245	A	1.10857947350908	0	lncRNA	40815-4_{9001..10263}	n406883|NR_024368|lncRNA|Homosapiens||RefGeneNoncode|NR_024368||3.6335100|-0.1460730	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n406883|NR_024368|lncRNA|Homosapiens||RefGeneNoncode|NR_024368||3.6335100|-0.1460730	chr7	128290294	128291556	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-60.00;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-56.00;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80"	NA	inter
CUST_35572_PI429285431	1.2311752	A	2.1934547	A	0.513245329829881	0	lncRNA	36987-1_{1..1321}	n342704|AK056941|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5206|NULL|-1.3509300|-0.2135778	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342704|AK056941|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5206|NULL|-1.3509300|-0.2135778	chr17	 41437408	 41438728	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5550_PI429285431	2.4187655	A	2.5389323	A	0.920081267485508	0	lncRNA	5480-1_{1..498}	"transcript_id ""ENST00000566645.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566645.1"" | genecode_v17"	chr16	 52646367	 52646864	+	ENSG00000260963.1	ENST00000566645.1	RP11-297L17.2	RP11-297L17.2-002	NA	NA	NA	inter
CUST_27343_PI429285431	1.5566318	A	0.9181316	A	1.55670998993215	0	lncRNA	28904-1_{1..562}	n324500|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040879|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040879|-1.2895500|-0.2302640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324500|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040879|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040879|-1.2895500|-0.2302640	chr6	 50674262	 50674823	-	NA	NA	NA	NA	TFAP2D	"hg19_refFlat_TFAP2D:range=chr6:50681769-507405775'pad=0,hg19_refFlat_TFAP2D:range=chr6:50681769-507405775'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40chr6:50681257-50722877"	NA	inner
CUST_12880_PI429285431	1.9217033	A	2.7013586	A	0.582505953494195	0	lncRNA	14508-1_{1..2257}	lnc-C5orf32-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf32-1:11	chr5	139552333	139554589	+	lnc-C5orf32-1	lnc-C5orf32-1:11	XLOC_004577	linc-C5orf32-1	C5orf32	NA	chr5:139554653-139562654	inter
CUST_40219_PI429285431	6.749036	P	6.6835604	P	1.04642984983822	0	lncRNA	41043-1_{1..1842}	n408050|NR_027855|lncRNA|Homosapiens||RefGeneNoncode|NR_027855||2.5741000|-0.2793597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408050|NR_027855|lncRNA|Homosapiens||RefGeneNoncode|NR_027855||2.5741000|-0.2793597	chr2	201717731	201719572	-	NA	NA	NA	NA	CLK1	NA	chr2:201709028-201729467	inner
CUST_27023_PI429285431	0.932854	A	1.4789011	A	0.684894129720096	0	lncRNA	28553-1_{1..465}	n324128|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001151|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001151|-1.0289200|-0.2286735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324128|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001151|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001151|-1.0289200|-0.2286735	chr9	 34655024	 34655488	-	NA	NA	NA	NA	IL11RA	NA	chr9:34652182-34661884	inter
CUST_4731_PI429285431	4.2070575	P	4.267288	P	0.959110869531837	0	lncRNA	4676-1_{1..3000}	"transcript_id ""ENST00000556738.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556738.1"" | genecode_v17"	chr14	 20728639	 20731638	-	ENSG00000258768.2	ENST00000556738.1	CTD-2292M16.8	CTD-2292M16.8-001	NA	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.52;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90"	NA	inter
CUST_9653_PI429285431	4.217378	P	4.2660666	P	0.966814757674029	0	lncRNA	11171-1_{1..1090}	lnc-ATF3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATF3-1:3	chr1	212734097	212735186	+	lnc-ATF3-1	lnc-ATF3-1:3	XLOC_000555	linc-ATF3-1	ATF3	NA	chr1:212738697-212744736	inter
CUST_23389_PI429285431	2.987082	P	3.694749	P	0.612309511954107	0	lncRNA	24957-1_{1..703}	lnc-C11orf39-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf39-1:1	chr11	131533060	131533762	-	lnc-C11orf39-1	lnc-C11orf39-1:1	ENSG00000224795.1	AP003039.3	NTM	NA	chr11:131523060-131543477	inner
CUST_23472_PI429285431	1.1302003	A	1.2170832	A	0.941554885128675	0	lncRNA	25039-1_{1..316}	lnc-GREM2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GREM2-2:1	chr1	240564300	240564615	-	lnc-GREM2-2	lnc-GREM2-2:1	ENSG00000233519.1	RP11-177F11.1	FMN2	NA	chr1:240554300-240574423	inner
CUST_35691_PI429285431	0.90597177	A	1.193329	A	0.819401688032397	0	lncRNA	37110-1_{1..1618}	n342851|BC034707|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5355|NULL|-1.0109700|-0.3122720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342851|BC034707|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5355|NULL|-1.0109700|-0.3122720	chr9	  2759255	  2760872	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51125_PI429285431	1.0981556	A	1.0528103	A	1.03193013574541	0	lncRNA	54757-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00007341 range=chr13:114053727-114065280 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007341 range=chr13:114053727-114065280 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	114056727	114059726	-	NA	NA	NA	NA	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-59.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-61.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70"	NA	inter
CUST_25427_PI429285431	3.3090158	A	3.898397	P	0.664627917778343	0	lncRNA	26957-1_{1..1308}	lnc-MME-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MME-3:1	chr3	155174477	155175784	+	lnc-MME-3	lnc-MME-3:1	ENSG00000239508.1	PLCH1-AS1	NA	NA	NA	inter
CUST_35903_PI429285431	0.92572755	A	1.3821206	A	0.728806105330197	0	lncRNA	37279-2_{3001..6000}	n344554|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_102|NULL|-1.4895300|-0.3671434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344554|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_102|NULL|-1.4895300|-0.3671434	chr4	124563705	124566704	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24896_PI429285431	0.929671	A	0.92021525	A	1.00657575239772	0	lncRNA	26437-1_{1..284}	lnc-RABL2B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RABL2B-1:1	chr22	 51181913	 51182196	-	lnc-RABL2B-1	lnc-RABL2B-1:1	ENSG00000254499.1	AC002056.5	ACR	NA	chr22:51176652-51183727	inner
CUST_50018_PI429285431	0.920284	A	0.9186201	A	1.00115399293176	0	lncRNA	53754-2_{3001..4041}	hg19_lincRNAsTranscripts_TCONS_l2_00028087 range=chr8:8090820-8102146 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028087 range=chr8:8090820-8102146 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	  8093820	  8094860	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-63.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0,hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-60.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0,hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0 3'pad=0 strand=- repeatMasking=none,-94.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0,hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0,hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70"	NA	inter
CUST_13541_PI429285431	0.9074074	A	0.90326667	A	1.00287425810672	0	lncRNA	15180-1_{1..410}	lnc-TNFRSF9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFRSF9-1:2	chr1	  8066573	  8066982	-	lnc-TNFRSF9-1	lnc-TNFRSF9-1:2	XLOC_000695	linc-TNFRSF9	ERRFI1	"hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-26.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-24.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-30.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr1:8071779-8076784"	NA	inter
CUST_38646_PI429285431	2.7874901	A	3.3284166	P	0.68732936379422	0	lncRNA	39650-1_{1..1680}	n383882|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wve.2||2.4420100|-0.1162333	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n383882|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wve.2||2.4420100|-0.1162333	chr20	 25754654	 25756333	-	NA	NA	NA	NA	LOC100289375	NA	chr20:25825857-25848100	inter
CUST_43030_PI429285431	0.93137354	A	0.91686684	A	1.01010600238681	0	lncRNA	46514-1_{1..137}	ENST00000410731 ncrna:snRNA chromosome:GRCh37:11:105695360:105695496:1 gene:ENSG00000222663 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410731 ncrna:snRNA chromosome:GRCh37:11:105695360:105695496:1 gene:ENSG00000222663 gene_biotype:snRNA transcript_biotype:snRNA	chr11	105695360	105695496	+	ENSG00000222663	ENST00000410731	NA	NA	GRIA4	NA	chr11:105685360-105705496	inter
LNCA_21_P0014900	0.9725977	A	0.9216501	A	1.03594513640429	0	lncRNA	XR_132894	XR_132894	XR_132894	NA	Hs.649274	LOC100507561	ankyrin repeat domain-containing protein 33B-like	NA	THC2536087	NA	"PREDICTED: Homo sapiens ankyrin repeat domain-containing protein 33B-like (LOC100507561), miscRNA [XR_132894]"	chr11:55640310-55640251	hs|11q11	Agilent_HUMAN_G3V2	XR_132894	XR_132894	chr11	 55640251	 55640310	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14048_PI429285431	5.170086	P	5.3193846	P	0.901688733170849	0	lncRNA	15694-2_{3001..4123}	lnc-ICOSLG-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ICOSLG-6:1	chr21	 45581913	 45583035	-	lnc-ICOSLG-6	lnc-ICOSLG-6:1	XLOC_014110	linc-CSTB-1	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80"	NA	inter
CUST_13048_PI429285431	1.4718852	A	0.899848	A	1.48662131657913	0	lncRNA	14673-1_{1..2547}	lnc-AC022148.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC022148.1-1:1	chr19	 38039532	 38042078	-	lnc-AC022148.1-1	lnc-AC022148.1-1:1	XLOC_013333	linc-ZNF569-2	ZNF793	NA	chr19:38029532-38034239	inter
CUST_15210_PI429285431	1.3032709	A	2.0937219	A	0.578163324421823	0	lncRNA	16880-1_{1..349}	lnc-RAB40A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB40A-1:3	chrX	102785676	102786024	-	lnc-RAB40A-1	lnc-RAB40A-1:3	XLOC_008200	linc-RAB40A-1	NA	NA	NA	inter
CUST_34351_PI429285431	0.9049636	A	0.8973492	A	1.00529185254138	0	lncRNA	35841-1_{1..1441}	n341220|BC038570|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3688|NULL|-0.9139130|-0.2832459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341220|BC038570|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3688|NULL|-0.9139130|-0.2832459	chr7	 29553839	 29555279	-	NA	NA	NA	NA	CHN2	NA	chr7:29543839-29553944	inner
CUST_47900_PI429285431	2.8740082	A	3.0430686	A	0.889421756147382	0	lncRNA	51793-1_{1..1482}	"gi|410171857|ref|XR_171428.1| PREDICTED: Homo sapiens uncharacterized LOC100996494 (LOC100996494), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171857|ref|XR_171428.1| PREDICTED: Homo sapiens uncharacterized LOC100996494 (LOC100996494), misc_RNA"	NA	NA	NA	NA	NA	XR_171428.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TIGD1:range=chr2:233412817-2334145925'pad=0,hg19_refFlat_TIGD1:range=chr2:233412817-2334145925'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	Unknown
CUST_28042_PI429285431	1.075327	A	0.98454195	A	1.06494952262777	0	lncRNA	29658-1_{1..397}	n325305|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326321|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326321|-1.1777600|-0.3941958	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325305|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326321|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326321|-1.1777600|-0.3941958	chr2	 54827743	 54828139	-	NA	NA	NA	NA	SPTBN1	NA	chr2:54817743-54839045	inner
CUST_1448_PI429285431	2.0274496	A	2.1618257	A	0.911063742050772	0	lncRNA	1437-1_{1..787}	"transcript_id ""ENST00000482142.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000482142.1"" | genecode_v17"	chr3	117723666	117724452	-	ENSG00000243276.1	ENST00000482142.1	RP11-384F7.1	RP11-384F7.1-001	NA	NA	NA	inter
CUST_5934_PI429285431	8.300013	P	7.9912934	P	1.23860794044453	0	lncRNA	5863-1_{1..278}	"transcript_id ""ENST00000582965.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582965.1"" | genecode_v17"	chr17	 62223330	 62223607	+	ENSG00000266402.1	ENST00000582965.1	RP11-329L6.1	RP11-329L6.1-001	TEX2	NA	chr17:62224795-62233836	inter
CUST_8366_PI429285431	5.509009	P	5.9055853	P	0.759658913686996	0	lncRNA	9945-1_{1..1003}	lnc-PMFBP1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PMFBP1-3:2	chr16	 72325069	 72326071	-	lnc-PMFBP1-3	lnc-PMFBP1-3:2	ENSG00000250143	XLOC_012003	NA	NA	NA	inter
CUST_19756_PI429285431	5.138441	P	5.1284127	P	1.00697530275619	0	lncRNA	21414-1_{1..2762}	lnc-ASAH2B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ASAH2B-1:1	chr10	 52417437	 52420198	+	lnc-ASAH2B-1	lnc-ASAH2B-1:1	ENSG00000231345.2	RP11-564C4.6	NA	NA	NA	inter
CUST_11439_PI429285431	3.3778439	P	3.4482398	P	0.952376613877931	0	lncRNA	13007-1_{1..923}	lnc-AC136428.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC136428.1.1-2:1	chr16	 33357218	 33358140	-	lnc-AC136428.1.1-2	lnc-AC136428.1.1-2:1	XLOC_011924	linc-TP53TG3B-4	NA	NA	NA	inter
CUST_19909_PI429285431	4.1429553	P	4.1325364	P	1.00724797147127	0	lncRNA	21564-1_{1..545}	lnc-AGPS-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGPS-3:2	chr2	178587817	178588361	+	lnc-AGPS-3	lnc-AGPS-3:2	ENSG00000229941.1	AC012499.1	PDE11A	NA	chr2:178577817-178598017	inner
CUST_1586_PI429285431	1.4718071	A	0.9221498	A	1.46373795607947	0	lncRNA	1572-1_{1..2240}	"transcript_id ""ENST00000474045.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000474045.1"" | genecode_v17"	chr3	181670174	181672413	+	ENSG00000242512.3	ENST00000474045.1	RP11-416O18.1	RP11-416O18.1-002	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30"	NA	inter
CUST_10427_PI429285431	2.2750409	A	1.414746	A	1.81540935890983	0	lncRNA	11955-1_{1..328}	lnc-C14orf177-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf177-3:2	chr14	 98628783	 98629110	+	lnc-C14orf177-3	lnc-C14orf177-3:2	XLOC_010924	linc-C14orf177-1	NA	NA	NA	inter
CUST_50569_PI429285431	1.311538	A	1.1686996	A	1.10407516992339	0	lncRNA	54262-1_{1..2514}	hg19_lincRNAsTranscripts_TCONS_l2_00030946 range=chrY:22626588-22632245 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030946 range=chrY:22626588-22632245 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrY	 22626588	 22629101	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24676_PI429285431	1.1673088	A	0.88883233	A	1.21291333433213	0	lncRNA	26223-1_{1..439}	lnc-FABP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FABP3-1:1	chr1	 31819425	 31819863	-	lnc-FABP3-1	lnc-FABP3-1:1	ENSG00000229044.1	RP11-266K22.2	ZCCHC17	"hg19_refFlat_ZCCHC17:range=chr1:31782946-318370405'pad=0,hg19_refFlat_ZCCHC17:range=chr1:31782946-318370405'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00chr1:31809425-31829646"	NA	inner
LNCA_21_P0001742	1.5381814	A	1.8914033	A	0.782833879818648	0	lncRNA	THC2507453	NA	NA	NA	NA	XLOC_001035	NA	NA	THC2507453	NA	"BROAD Institute lincRNA (XLOC_001035), lincRNA [TCONS_00002485]"	chr1:154442176-154442117	hs|1q21.3	Agilent_HUMAN_G3V2	THC2507453	THC2507453	chr1	154442117	154442176	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42265_PI429285431	8.929276	P	8.871399	P	1.04093284698168	0	lncRNA	44818-1_{1..136}	ENST00000516580 ncrna:rRNA chromosome:GRCh37:16:34982891:34983026:1 gene:ENSG00000252389 gene_biotype:rRNA transcript_biotype:rRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516580 ncrna:rRNA chromosome:GRCh37:16:34982891:34983026:1 gene:ENSG00000252389 gene_biotype:rRNA transcript_biotype:rRNA	chr16	 34982891	 34983026	+	ENSG00000252389	ENST00000516580	NA	NA	NA	NA	NA	inter
CUST_42867_PI429285431	0.929913	A	0.928921	A	1.00068783845556	0	lncRNA	45925-1_{1..75}	ENST00000390993 ncrna:snoRNA chromosome:GRCh37:6:156699884:156699958:1 gene:ENSG00000212295 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390993 ncrna:snoRNA chromosome:GRCh37:6:156699884:156699958:1 gene:ENSG00000212295 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	156699884	156699958	+	ENSG00000212295	ENST00000390993	NA	NA	NA	NA	NA	inter
CUST_36394_PI429285431	1.0152942	A	0.9185312	A	1.06937140152517	0	lncRNA	37612-1_{1..316}	n344911|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_460|NULL|-1.2622900|-0.3140685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344911|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_460|NULL|-1.2622900|-0.3140685	chr6	 79904122	 79904437	-	NA	NA	NA	NA	HMGN3	NA	chr6:79910962-79914440	inter
CUST_14832_PI429285431	1.4752489	A	0.9202036	A	1.46921476526191	0	lncRNA	16493-1_{1..1309}	lnc-CES5A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CES5A-1:1	chr16	 56110060	 56111368	-	lnc-CES5A-1	lnc-CES5A-1:1	XLOC_011957	linc-CES5A-1	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90"	NA	inter
CUST_20757_PI429285431	0.9341279	A	1.8303334	A	0.537298047304929	0	lncRNA	22390-1_{1..487}	lnc-ILK-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ILK-3:1	chr11	  6656163	  6656649	+	lnc-ILK-3	lnc-ILK-3:1	ENSG00000255410.1	RP11-732A19.6	DCHS1	"hg19_refFlat_DCHS1:range=chr11:6643010-66628445'pad=0,hg19_refFlat_DCHS1:range=chr11:6643010-66628445'pad=0 3'pad=0 strand=- repeatMasking=none,-100.00chr11:6646163-6666439"	NA	inner
CUST_19865_PI429285431	0.91828537	A	1.2549286	A	0.791881669340004	0	lncRNA	21522-1_{1..427}	lnc-MYO1D-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-MYO1D-2:1	chr17	 31379819	 31380245	-	lnc-MYO1D-2	lnc-MYO1D-2:1	ENSG00000264598.1	RP1-29G21.1	ACCN1	NA	chr17:31369819-31389885	inner
CUST_4571_PI429285431	0.91777706	A	0.901053	A	1.01165968537451	0	lncRNA	4520-1_{1..2618}	"transcript_id ""ENST00000413591.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413591.1"" | genecode_v17"	chr13	 30677315	 30679932	-	ENSG00000224511.1	ENST00000413591.1	LINC00365	LINC00365-002	NA	NA	NA	inter
CUST_3598_PI429285431	3.3640604	P	3.819633	P	0.72922068984666	0	lncRNA	3568-1_{1..2390}	"transcript_id ""ENST00000454152.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454152.1"" | genecode_v17"	chr10	  4426438	  4428827	+	ENSG00000224382.1	ENST00000454152.1	LINC00703	LINC00703-001	NA	NA	NA	inter
CUST_35597_PI429285431	1.0736907	A	1.0879599	A	0.99015809592566	0	lncRNA	37012-1_{1..2115}	n342736|AK055123|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5239|NULL|-1.1628900|-0.2840120	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342736|AK055123|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5239|NULL|-1.1628900|-0.2840120	chr6	 29979874	 29981988	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18381_PI429285431	3.639136	P	4.0187154	P	0.768661651834516	0	lncRNA	20108-1_{1..557}	lnc-CLEC19A.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLEC19A.1-1:1	chr16	 19333278	 19333834	+	lnc-CLEC19A.1-1	lnc-CLEC19A.1-1:1	ENSG00000188477	CLEC19A	NA	NA	NA	inter
LNCA_19_P00320242	2.0008783	A	0.9087371	A	2.13190211626356	0	lncRNA	ENST00000551938	XR_110299	XR_110299	NA	Hs.728856	LOC100506948	NA	ENST00000551938	THC2500438	NA	"PREDICTED: Homo sapiens hypothetical LOC100506948 (LOC100506948), miscRNA [XR_110299]"	chr15:25246688-25246747	hs|15q11.2	Agilent_HUMAN_G3V2	ENST00000551938	ENST00000551938	chr15	 25246688	 25246747	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14673_PI429285431	8.029038	P	8.108975	P	0.946098960330637	0	lncRNA	16342-1_{1..740}	lnc-C14orf79-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf79-2:4	chr14	105564810	105565549	+	lnc-C14orf79-2	lnc-C14orf79-2:4	XLOC_010952	linc-BTBD6-1	NA	NA	NA	inter
CUST_35050_PI429285431	0.8953804	A	0.89474934	A	1.00043751314073	0	lncRNA	36460-1_{1..1448}	n341997|BC038355|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4478|NULL|-0.9447620|-0.3564247	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341997|BC038355|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4478|NULL|-0.9447620|-0.3564247	chr12	100426102	100427549	-	NA	NA	NA	NA	UHRF1BP1L	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60chr12:100416102-100437457"	NA	inter
CUST_10578_PI429285431	0.9274819	A	0.94143295	A	0.990376474395515	0	lncRNA	12109-2_{3001..6000}	lnc-GPCPD1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-GPCPD1-1:2	chr20	  5493522	  5496521	-	lnc-GPCPD1-1	lnc-GPCPD1-1:2	XLOC_013643	linc-PROKR2-4	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00"	NA	inter
CUST_17696_PI429285431	0.9140761	A	0.8980705	A	1.01115600577132	0	lncRNA	19425-1_{1..582}	lnc-RP11-201M22.1.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-201M22.1.1-1:4	chr11	 91545155	 91545736	+	lnc-RP11-201M22.1.1-1	lnc-RP11-201M22.1.1-1:4	XLOC_009248	linc-FAT3-3	NA	NA	NA	inter
CUST_941_PI429285431	2.3486784	A	2.273693	A	1.05335037604898	0	lncRNA	931-1_{1..284}	"transcript_id ""ENST00000437233.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437233.1"" | genecode_v17"	chr2	 77879539	 77879822	-	ENSG00000227088.1	ENST00000437233.1	AC084149.2	AC084149.2-001	NA	NA	NA	inter
CUST_18467_PI429285431	1.6849104	A	1.2833958	A	1.32089391132016	0	lncRNA	20188-1_{1..578}	lnc-PLCD1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLCD1-1:5	chr3	 37903192	 37903769	-	lnc-PLCD1-1	lnc-PLCD1-1:5	ENSG00000235257	AC093415.2	CTDSPL	NA	chr3:37903669-37913229	inter
CUST_17231_PI429285431	2.3595412	A	2.3308947	A	1.02005468714593	0	lncRNA	18948-1_{1..1102}	lnc-JUN-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JUN-5:2	chr1	 59612348	 59613449	-	lnc-JUN-5	lnc-JUN-5:2	XLOC_000851	linc-JUN-1	NA	NA	NA	inter
CUST_51463_PI429285431	1.8556894	A	2.4630535	A	0.656394884220731	0	lncRNA	55040-1_{1..816}	hg19_lincRNAsTranscripts_TCONS_l2_00010124 range=chr16:33365341-33374151 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010124 range=chr16:33365341-33374151 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 33365341	 33366156	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9956_PI429285431	0.90292305	A	0.8959896	A	1.00481746818511	0	lncRNA	11480-1_{1..523}	lnc-GYPC-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GYPC-1:2	chr2	127511268	127511790	+	lnc-GYPC-1	lnc-GYPC-1:2	XLOC_001659	linc-PROC-4	NA	NA	NA	inter
CUST_699_PI429285431	0.89854413	A	0.8935277	A	1.00348317652044	0	lncRNA	692-1_{1..759}	"transcript_id ""ENST00000590961.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590961.1"" | genecode_v17"	chr2	  6774001	  6774759	-	ENSG00000236172.2	ENST00000590961.1	AC097517.2	AC097517.2-031	NA	NA	NA	inter
CUST_24469_PI429285431	1.3999655	A	1.514164	A	0.923895445190014	0	lncRNA	26022-1_{1..375}	lnc-GTF2I-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2I-1:1	chr7	 74047826	 74048200	+	lnc-GTF2I-1	lnc-GTF2I-1:1	ENSG00000261726.1	RP5-1186P10.1	NA	NA	NA	inter
CUST_1782_PI429285431	0.9129738	A	2.0131357	A	0.466464145978095	0	lncRNA	1768-1_{1..468}	"transcript_id ""ENST00000510371.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510371.1"" | genecode_v17"	chr4	 59717135	 59717602	-	ENSG00000251339.1	ENST00000510371.1	RP11-506N2.1	RP11-506N2.1-002	NA	NA	NA	inter
LNCA_19_P00322621	7.9533134	P	8.351866	P	0.758618994620277	0	lncRNA	ENST00000436710	XR_108951	XR_108951	NA	NA	LOC100506119	NA	ENST00000436710	THC2610745	NA	"PREDICTED: Homo sapiens hypothetical LOC100506119, transcript variant 1 (LOC100506119), miscRNA [XR_108951]"	chr9:132104035-132104094	hs|9q34.11	Agilent_HUMAN_G3V2	ENST00000436710	ENST00000436710	chr9	132104035	132104094	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3495_PI429285431	0.9204695	A	2.7721853	A	0.2770626608372	0	lncRNA	3466-1_{1..425}	"transcript_id ""ENST00000423924.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423924.1"" | genecode_v17"	chr9	 99449338	 99449762	+	ENSG00000224848.1	ENST00000423924.1	RP11-535M15.1	RP11-535M15.1-001	NA	NA	NA	inter
CUST_51637_PI429285431	4.084851	P	4.4347014	P	0.784665459420465	0	lncRNA	55207-1_{1..559}	hg19_lincRNAsTranscripts_TCONS_l2_00011262 range=chr17:42098476-42101170 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011262 range=chr17:42098476-42101170 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 42098476	 42099034	-	NA	NA	NA	NA	TMEM101	NA	chr17:42088556-42092345	inter
CUST_51130_PI429285431	0.9038179	A	1.3939332	A	0.711968195119199	0	lncRNA	54761-1_{1..701}	hg19_lincRNAsTranscripts_TCONS_l2_00007043 range=chr13:114965101-114966606 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007043 range=chr13:114965101-114966606 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	114965101	114965801	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15587_PI429285431	6.0859685	P	5.27851	P	1.75012564533808	0	lncRNA	17273-1_{1..1789}	lnc-AC131097.4.1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC131097.4.1-3:5	chr2	243026247	243028035	-	lnc-AC131097.4.1-3	lnc-AC131097.4.1-3:5	XLOC_002560	linc-PDCD1-4	NA	NA	NA	inter
LNCA_21_P0003820	0.9241621	A	0.9116144	A	1.008735335177	0	lncRNA	TCONS_00008715	NA	NA	NA	NA	XLOC_004227	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004227), lincRNA [TCONS_00008715]"	chr4:189738803-189738744	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008715	TCONS_00008715	chr4	189738744	189738803	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23377_PI429285431	1.224201	A	1.7423756	A	0.698254755887072	0	lncRNA	24945-1_{1..531}	lnc-TSPO-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSPO-1:1	chr22	 43609161	 43609691	+	lnc-TSPO-1	lnc-TSPO-1:1	ENSG00000236272.1	Z82214.3	SCUBE1	NA	chr22:43599229-43619667	inner
CUST_79_PI429201921	6.514044	P	6.1438937	P	1.29248747499634	0	lncRNA	81-1_{1..2374}	TC09002539.hg.1	TCONS_l2_00029951-XLOC_l2_015194 // Broad TUCP // linc-FAM75A6-18 chr9:-:46685762-46688081 // chr9 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00029954-XLOC_l2_015194 // Broad TUCP // linc-FAM75A6-18 chr9:-:46686632-46688137 // chr9 // 100 // 100 // 0 // --- // 0/// TCONS_l2_00029953-XLOC_l2_015194 // Broad TUCP // linc-FAM75A6-18 chr9:-:46686630-46688098 // chr9 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00029952-XLOC_l2_015194 // Broad TUCP // linc-FAM75A6-18 chr9:-:46686628-46687427 // chr9 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr9:-:46685762-46688081	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00029951-XLOC_l2_015194	linc-FAM75A6-18	chr9	 46685762	 46688081	-	NA	NA	NA	NA	ZNF99	NA	chr19:22924985-22947677	Unknown
CUST_33523_PI429285431	2.5862195	A	2.331224	A	1.19333202082965	0	lncRNA	35091-1_{1..2882}	n340260|AK024235|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2721|NULL|-0.4614920|-0.3757562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340260|AK024235|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2721|NULL|-0.4614920|-0.3757562	chr4	153696473	153699354	-	NA	NA	NA	NA	ARFIP1	NA	chr4:153701112-153709355	inner
CUST_12293_PI429285431	0.9160943	A	0.91046	A	1.00391303516804	0	lncRNA	13904-1_{1..475}	lnc-UBE2F-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBE2F-1:1	chr2	238870409	238870883	+	lnc-UBE2F-1	lnc-UBE2F-1:1	XLOC_001913	linc-UBE2F	UBE2F	NA	chr2:238875587-238880550	inter
CUST_45424_PI429285431	4.2303886	P	4.870164	P	0.641812858979959	0	lncRNA	49846-1_{1..3000}	"gi|221554512|ref|NR_026677.1| Homo sapiens MIR600 host gene (non-protein coding) (MIR600HG), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|221554512|ref|NR_026677.1| Homo sapiens MIR600 host gene (non-protein coding) (MIR600HG), non-coding RNA"	Chr9	125871773	125874772	-	81571	NR_026677.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0011988	0.92689484	A	0.9162386	A	1.00741368902899	0	lncRNA	TCONS_l2_00015075	NA	NA	NA	NA	XLOC_l2_008409	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008409), lincRNA [TCONS_l2_00015075]"	chr2:201591863-201591804	hs|2q33.1	Agilent_HUMAN_G3V2	TCONS_l2_00015075	TCONS_l2_00015075	chr2	201591804	201591863	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6570_PI429285431	1.4297732	A	1.406367	A	1.01635626430756	0	lncRNA	6519-1_{1..551}	"transcript_id ""ENST00000596623.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596623.1"" | genecode_v17"	chr19	 53418449	 53418999	-	ENSG00000213793.3	ENST00000596623.1	ZNF888	ZNF888-001	ZNF816-ZNF321P	NA	chr19:53430388-53436723	inter
CUST_47644_PI429285431	5.4579844	P	3.3140056	P	4.41979299110098	0	lncRNA	51630-1_{1..2508}	"gi|296278196|ref|NR_027141.2| Homo sapiens family with sequence similarity 45, member B (pseudogene) (FAM45B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|296278196|ref|NR_027141.2| Homo sapiens family with sequence similarity 45, member B (pseudogene) (FAM45B), non-coding RNA"	ChrX	129628915	129631422	+	55855	NR_027141.2	NA	NA	NA	NA	NA	inter
CUST_48679_PI429285431	0.9295982	A	0.9360339	A	0.995549047669435	0	lncRNA	52521-2_{3001..5400}	hg19_lincRNAsTranscripts_TCONS_l2_00013850 range=chr2:101218847-101225992 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013850 range=chr2:101218847-101225992 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	101221847	101224246	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60"	NA	inter
CUST_20797_PI429285431	1.6308551	A	1.2381934	A	1.31281324552977	0	lncRNA	22428-1_{1..576}	lnc-ADAM22-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAM22-1:1	chr7	 87848064	 87848639	+	lnc-ADAM22-1	lnc-ADAM22-1:1	ENSG00000254003.1	CTB-167B5.1	SRI	"hg19_refFlat_SRI:range=chr7:87835793-878562295'pad=0,hg19_refFlat_SRI:range=chr7:87835793-878562295'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00;hg19_refFlat_SRI:range=chr7:87837804-878562295'pad=0,hg19_refFlat_SRI:range=chr7:87837804-878562295'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00;hg19_refFlat_SRI:range=chr7:87835793-878493415'pad=0,hg19_refFlat_SRI:range=chr7:87835793-878493415'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00;hg19_refFlat_SRI:range=chr7:87837804-878493415'pad=0,hg19_refFlat_SRI:range=chr7:87837804-878493415'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00chr7:87838064-87856308"	NA	inner
CUST_10577_PI429285431	6.3373775	P	6.777469	P	0.737087858864097	0	lncRNA	12109-1_{1..3000}	lnc-GPCPD1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-GPCPD1-1:2	chr20	  5490522	  5493521	-	lnc-GPCPD1-1	lnc-GPCPD1-1:2	XLOC_013643	linc-PROKR2-4	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00"	NA	inter
CUST_7999_PI429285431	9.47855	P	10.026829	P	0.683835393560632	0	lncRNA	9610-1_{1..737}	lnc-POM121L4P-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-POM121L4P-1:5	chr22	 21058599	 21059335	+	lnc-POM121L4P-1	lnc-POM121L4P-1:5	ENSG00000226287	TMEM191A	PI4KA	NA	chr22:21061979-21068890	inter
CUST_45879_PI429285431	0.9153745	A	0.9396105	A	0.983341203225684	0	lncRNA	50202-1_{1..1744}	"gi|256223131|ref|NR_028346.1| Homo sapiens tripartite motif containing 53A, pseudogene (TRIM53AP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|256223131|ref|NR_028346.1| Homo sapiens tripartite motif containing 53A, pseudogene (TRIM53AP), non-coding RNA"	Chr11	 89726709	 89728452	-	642569	NR_028346.1	NA	NA	NA	NA	NA	inter
CUST_22634_PI429285431	1.543417	A	2.3725593	A	0.562863772350025	0	lncRNA	24220-1_{1..601}	lnc-BOLA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BOLA3-1:1	chr2	 74208262	 74208862	-	lnc-BOLA3-1	lnc-BOLA3-1:1	ENSG00000237883.1	DGUOK-AS1	NA	NA	NA	inter
CUST_19378_PI429285431	7.4090157	P	6.986877	P	1.33991241476405	0	lncRNA	21040-1_{1..586}	lnc-BLID-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BLID-1:3	chr11	121975779	121976364	-	lnc-BLID-1	lnc-BLID-1:3	ENSG00000255248.2	RP11-166D19.1	NA	NA	NA	inter
CUST_10241_PI429285431	2.1544454	A	0.9930845	A	2.23668315349285	0	lncRNA	11765-1_{1..1367}	lnc-TRIP10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIP10-1:1	chr19	  6661471	  6662837	+	lnc-TRIP10-1	lnc-TRIP10-1:1	XLOC_012931	linc-TRIP10-6	TNFSF14	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr19:6651471-6670599"	NA	inter
CUST_46546_PI429285431	5.30564	P	5.4620123	P	0.8972784702765	0	lncRNA	50731-1_{1..2366}	"gi|224465204|ref|NR_027074.1| Homo sapiens uncharacterized LOC283761 (LOC283761), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224465204|ref|NR_027074.1| Homo sapiens uncharacterized LOC283761 (LOC283761), transcript variant 1, non-coding RNA"	Chr15	 90048161	 90050526	-	283761	NR_027074.1	NA	NA	NA	NA	NA	inter
CUST_35108_PI429285431	1.8182737	A	1.2048166	A	1.5299209375412	0	lncRNA	36514-2_{3001..3922}	n342077|AK124105|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4558|NULL|0.9387890|-0.3534307	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342077|AK124105|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4558|NULL|0.9387890|-0.3534307	chr6	 84566308	 84567229	+	NA	NA	NA	NA	CYB5R4	NA	chr6:84569370-84577232	inner
CUST_44487_PI429285431	0.9656376	A	0.9280814	A	1.02637376536987	0	lncRNA	49089-2_{3001..3214}	"gi|299829234|ref|NR_033898.1| Homo sapiens uncharacterized LOC285577 (LOC285577), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|299829234|ref|NR_033898.1| Homo sapiens uncharacterized LOC285577 (LOC285577), non-coding RNA"	Chr5	  3420266	  3420479	-	285577	NR_033898.1	NA	NA	NA	NA	NA	inter
CUST_47625_PI429285431	0.91813517	A	0.9070988	A	1.00767916344315	0	lncRNA	51617-1_{1..3000}	"gi|372620357|ref|NR_046009.1| Homo sapiens zinc finger, matrin-type 1 (ZMAT1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372620357|ref|NR_046009.1| Homo sapiens zinc finger, matrin-type 1 (ZMAT1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_046009.1	NA	NA	NA	NA	NA	Unknown
CUST_42083_PI429285431	1.9719518	A	2.2446244	A	0.82778464922175	0	lncRNA	44014-1_{1..94}	ENST00000362201 ncrna:miRNA chromosome:GRCh37:17:28444097:28444190:1 gene:ENSG00000199071 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362201 ncrna:miRNA chromosome:GRCh37:17:28444097:28444190:1 gene:ENSG00000199071 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 28444097	 28444190	+	ENSG00000199071	ENST00000362201	NA	NA	EFCAB5	NA	chr17:28434097-28435470	inner
CUST_5939_PI429285431	0.9197407	A	1.0631765	A	0.905360456268139	0	lncRNA	5868-1_{1..384}	"transcript_id ""ENST00000589826.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589826.1"" | genecode_v17"	chr17	 66553657	 66554040	+	ENSG00000267461.1	ENST00000589826.1	RP11-120M18.5	RP11-120M18.5-001	FAM20A	NA	chr17:66543657-66588718	inner
CUST_23156_PI429285431	1.0833696	A	1.519466	A	0.739131825650441	0	lncRNA	24727-1_{1..524}	lnc-POU4F2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POU4F2-2:1	chr4	147866583	147867106	+	lnc-POU4F2-2	lnc-POU4F2-2:1	ENSG00000248764.1	RP11-292D4.2	TTC29	NA	chr4:147856583-147867034	inner
CUST_34072_PI429285431	0.92233	A	0.9346311	A	0.991509774492644	0	lncRNA	35601-1_{1..635}	n340895|Z83944|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3360|NULL|-1.0068900|-0.3320338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340895|Z83944|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3360|NULL|-1.0068900|-0.3320338	chr6	 25926122	 25926756	+	NA	NA	NA	NA	SLC17A2	NA	chr6:25916122-25930946	inner
CUST_3602_PI429285431	0.985106	A	1.0106757	A	0.982432573118665	0	lncRNA	3572-1_{1..692}	"transcript_id ""ENST00000449457.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449457.1"" | genecode_v17"	chr10	  5307996	  5308687	-	ENSG00000224034.1	ENST00000449457.1	RP11-445P17.8	RP11-445P17.8-001	NA	NA	NA	inter
CUST_8462_PI429285431	3.4453192	P	3.6800447	P	0.849846683150919	0	lncRNA	10030-1_{1..3000}	lnc-KCNH3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNH3-1:1	chr12	 49997960	 50000959	+	lnc-KCNH3-1	lnc-KCNH3-1:1	ENSG00000250952	ENST00000527253	FAM186B	"hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FAM186B:range=chr12:49981388-499992605'pad=0,hg19_refFlat_FAM186B:range=chr12:49981388-499992605'pad=0 3'pad=0 strand=- repeatMasking=none,-99.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40chr12:49987960-49999433"	NA	inner
CUST_3338_PI429285431	1.8402951	A	2.00249	A	0.89366442515516	0	lncRNA	3316-2_{3001..4171}	"transcript_id ""ENST00000518973.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000518973.1"" | genecode_v17"	chr8	138824687	138825857	-	ENSG00000253288.1	ENST00000518973.1	RP11-238K6.1	RP11-238K6.1-001	NA	NA	NA	inter
CUST_33714_PI429285431	9.771207	P	6.8280325	P	7.69101763160703	0	lncRNA	35274-1_{1..2066}	n340493|BC032516|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2954|NULL|13.3349000|-0.2907612	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340493|BC032516|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2954|NULL|13.3349000|-0.2907612	chr5	 71403312	 71405377	+	NA	NA	NA	NA	MAP1B	NA	chr5:71403118-71501128	inner
CUST_9327_PI429285431	0.9918983	A	0.92341626	A	1.04861278438756	0	lncRNA	10835-1_{1..407}	lnc-ZFP42-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP42-2:10	chr4	188632898	188633304	+	lnc-ZFP42-2	lnc-ZFP42-2:10	XLOC_003829	linc-ZFP42-3	NA	"hg19_refFlat_GCFC1:range=chr21:34113820-341439795'pad=0,hg19_refFlat_GCFC1:range=chr21:34113820-341439795'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90"	NA	inter
CUST_37_PI429285431	3.505927	P	3.9183922	P	0.751338429337644	0	lncRNA	36-1_{1..486}	"transcript_id ""ENST00000319426.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000319426.3"" | genecode_v17"	chr10	 47151363	 47151848	-	ENSG00000223477.2	ENST00000319426.3	LINC00842	LINC00842-201	ANXA8L1	NA	chr10:47157989-47161848	inter
CUST_26694_PI429285431	9.042016	P	9.155861	P	0.924121852744291	0	lncRNA	28202-2_{3001..6000}	n1114|AF222983|DISC2RNA|Homosapiens|DISC2|NONCODEv2.0|n1114|NULL|-1.5906100|-0.3279822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n1114|AF222983|DISC2RNA|Homosapiens|DISC2|NONCODEv2.0|n1114|NULL|-1.5906100|-0.3279822	chr1	231951705	231954704	+	NA	NA	NA	NA	DISC1	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-18.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60chr1:231938705-231966006"	NA	inter
CUST_41762_PI429285431	0.9254162	A	1.2178977	A	0.816496439643732	0	lncRNA	43322-1_{1..82}	ENST00000577469 ncrna:miRNA chromosome:GRCh37:3:175087329:175087410:1 gene:ENSG00000264974 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577469 ncrna:miRNA chromosome:GRCh37:3:175087329:175087410:1 gene:ENSG00000264974 gene_biotype:miRNA transcript_biotype:miRNA	chr3	175087329	175087410	+	ENSG00000264974	ENST00000577469	NA	NA	NAALADL2	NA	chr3:175077329-175097410	inner
CUST_17844_PI429285431	4.835247	P	4.6919765	P	1.10440589978522	0	lncRNA	19579-1_{1..1689}	lnc-SCCPDH-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCCPDH-1:2	chr1	246943686	246945374	+	lnc-SCCPDH-1	lnc-SCCPDH-1:2	XLOC_000643	linc-VN1R5-3	LOC100130097	NA	chr1:246935180-246948062	inter
CUST_22658_PI429285431	0.9011681	A	0.9046961	A	0.997557564358606	0	lncRNA	24242-1_{1..674}	lnc-ADAM8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAM8-1:1	chr10	135061295	135061968	-	lnc-ADAM8-1	lnc-ADAM8-1:1	ENSG00000166917.6	RP13-49I15.5	VENTX	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10chr10:135051408-135055433"	NA	inter
LNCA_19_P00322673	3.1357114	P	3.2236843	P	0.940843780428893	0	lncRNA	TCONS_l2_00027074	NA	NA	NA	NA	XLOC_l2_013314	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013314), lincRNA [TCONS_l2_00027074]"	chr7:26519518-26519577	hs|7p15.2	Agilent_HUMAN_G3V2	TCONS_l2_00027074	TCONS_l2_00027074	chr7	 26519518	 26519577	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11669_PI429285431	1.5795374	A	1.25758	A	1.25002539120313	0	lncRNA	13247-1_{1..528}	lnc-GPR172B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR172B-2:1	chr17	  4981182	  4981709	-	lnc-GPR172B-2	lnc-GPR172B-2:1	XLOC_012365	linc-GPR172B	ZFP3	NA	chr17:4971182-4991678	inter
CUST_16933_PI429285431	5.0866456	P	5.198702	P	0.925268255355348	0	lncRNA	18645-1_{1..696}	lnc-CALM1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CALM1-1:7	chr14	 90924940	 90925635	+	lnc-CALM1-1	lnc-CALM1-1:7	XLOC_010902	linc-C14orf159-3	NA	NA	NA	inter
LNCA_21_P0008986	1.0413493	A	0.9853374	A	1.03958801013114	0	lncRNA	XR_109332	XR_109332	XR_109332	NA	NA	LOC100506542	uncharacterized LOC100506542	NA	THC2672305	NA	"PREDICTED: Homo sapiens hypothetical LOC100506542 (LOC100506542), miscRNA [XR_109332]"	chr16:86233230-86233289	hs|16q24.1	Agilent_HUMAN_G3V2	XR_109332	XR_109332	chr16	 86233230	 86233289	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16186_PI429285431	0.93126327	A	0.9303816	A	1.00061131385088	0	lncRNA	17891-1_{1..841}	lnc-DHX37-9:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-9:3	chr12	127174581	127175421	-	lnc-DHX37-9	lnc-DHX37-9:3	XLOC_010243	linc-DHX37-8	NA	NA	NA	inter
CUST_42545_PI429285431	0.907953	A	0.90551835	A	1.00168899553207	0	lncRNA	45354-1_{1..70}	ENST00000516072 ncrna:snoRNA chromosome:GRCh37:15:80434400:80434469:1 gene:ENSG00000251881 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516072 ncrna:snoRNA chromosome:GRCh37:15:80434400:80434469:1 gene:ENSG00000251881 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 80434400	 80434469	+	ENSG00000251881	ENST00000516072	NA	NA	ZFAND6	NA	chr15:80424400-80430735	inter
CUST_18059_PI429285431	0.9007299	A	1.1775004	A	0.825436706293481	0	lncRNA	19794-1_{1..507}	lnc-SNCA-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNCA-2:2	chr4	 90472211	 90472717	-	lnc-SNCA-2	lnc-SNCA-2:2	XLOC_004016	linc-GPRIN3-2	NA	NA	NA	inter
CUST_6363_PI429285431	1.7462621	A	2.7034914	A	0.51504510973063	0	lncRNA	6288-1_{1..1534}	"transcript_id ""ENST00000596487.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596487.1"" | genecode_v17"	chr19	 16653434	 16654967	-	ENSG00000269399.1	ENST00000596487.1	CTD-3222D19.7	CTD-3222D19.7-001	CHERP	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10chr19:16643434-16653263"	NA	inter
CUST_5118_PI429285431	3.5720932	P	3.3493335	P	1.16696371234088	0	lncRNA	5058-1_{1..220}	"transcript_id ""ENST00000553382.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553382.1"" | genecode_v17"	chr15	 26376819	 26377038	+	ENSG00000259150.1	ENST00000553382.1	RP11-1084I9.3	RP11-1084I9.3-005	NA	NA	NA	inter
CUST_7026_PI429285431	0.9137199	A	1.0401018	A	0.916126102169867	0	lncRNA	6973-1_{1..544}	"transcript_id ""ENST00000391359.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000391359.2"" | genecode_v17"	chrX	 13998185	 13998728	-	ENSG00000212663.2	ENST00000391359.2	RP1-122K4.3	RP1-122K4.3-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70"	NA	inter
CUST_39930_PI429285431	2.860186	A	3.0826182	P	0.857119223924254	0	lncRNA	40808-1_{1..1318}	n406809|NR_024245|lncRNA|Homosapiens||RefGeneNoncode|NR_024245||-1.2101900|-0.2251392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406809|NR_024245|lncRNA|Homosapiens||RefGeneNoncode|NR_024245||-1.2101900|-0.2251392	chr10	102672325	102673642	+	NA	NA	NA	NA	FAM178A	NA	chr10:102672326-102683643	inner
CUST_17003_PI429285431	1.5695689	A	2.2382116	A	0.629098270039762	0	lncRNA	18713-1_{1..696}	lnc-GATA3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GATA3-2:1	chr10	  8084456	  8085151	+	lnc-GATA3-2	lnc-GATA3-2:1	XLOC_008380	linc-GATA3-2	NA	NA	NA	inter
CUST_9047_PI429285431	5.713137	P	5.857446	P	0.904812647112073	0	lncRNA	10572-1_{1..591}	lnc-FAM20C-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM20C-3:4	chr7	   153409	   153999	+	lnc-FAM20C-3	lnc-FAM20C-3:4	ENSG00000240859	XLOC_005953	NA	NA	NA	inter
LNCA_21_P0007683	1.8170842	A	0.92368054	A	1.85755336752393	0	lncRNA	ENST00000536751	NA	NA	NA	NA	ANO2	anoctamin 2	ENST00000536751	NA	GO:0005886|GO:0034707|GO:0005730|GO:0005229|GO:0005634|GO:0016021|GO:0005216|GO:0006811	"BROAD Institute lincRNA (XLOC_009993), lincRNA [TCONS_00020691]"	chr12:5641135-5641076	hs|12p13.31	Agilent_HUMAN_G3V2	ENST00000536751	ENST00000536751	chr12	  5641076	  5641135	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43900_PI429285431	10.144105	P	10.256589	P	0.924994055979834	0	lncRNA	48614-1_{1..2306}	"gi|214010244|ref|NR_024520.1| Homo sapiens lectin, mannose-binding 2-like (LMAN2L), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|214010244|ref|NR_024520.1| Homo sapiens lectin, mannose-binding 2-like (LMAN2L), transcript variant 5, non-coding RNA"	Chr2	 97371666	 97373971	-	81562	NR_024520.1	NA	NA	NA	NA	NA	inter
CUST_24037_PI429285431	2.2742434	A	3.190135	P	0.53001621411265	0	lncRNA	25589-1_{1..2397}	lnc-PADI4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PADI4-1:2	chr1	 17727701	 17730097	+	lnc-PADI4-1	lnc-PADI4-1:2	ENSG00000256049.2	PADI6	RCC2	NA	chr1:17733251-17738195	inner
CUST_25357_PI429285431	4.8730354	P	5.14457	P	0.828437864582434	0	lncRNA	26887-1_{1..1078}	lnc-SNAPC5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNAPC5-1:1	chr15	 66784340	 66785417	-	lnc-SNAPC5-1	lnc-SNAPC5-1:1	ENSG00000261351.1	CTD-3185P2.1	MAP2K1	"hg19_refFlat_MAP2K1:range=chr15:66679686-667829535'pad=0,hg19_refFlat_MAP2K1:range=chr15:66679686-667829535'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50chr15:66774340-66783882"	NA	inner
CUST_34941_PI429285431	0.91457	A	0.907399	A	1.00498293215029	0	lncRNA	36359-1_{1..1364}	n341860|BC039484|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4340|NULL|0.0555574|-0.2628566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341860|BC039484|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4340|NULL|0.0555574|-0.2628566	chr12	 23334267	 23335630	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60"	NA	inter
CUST_12591_PI429285431	1.9274936	A	0.96045434	A	1.95482472866164	0	lncRNA	14204-1_{1..2706}	lnc-PMFBP1-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PMFBP1-4:6	chr16	 72461289	 72463994	-	lnc-PMFBP1-4	lnc-PMFBP1-4:6	XLOC_012004	linc-PMFBP1-1	NA	NA	NA	inter
CUST_21587_PI429285431	4.0660605	P	4.856424	P	0.578198391309567	0	lncRNA	23201-1_{1..713}	lnc-GTDC1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTDC1-4:1	chr2	144355506	144356218	-	lnc-GTDC1-4	lnc-GTDC1-4:1	ENSG00000258268.1	RP11-570L15.1	ARHGAP15	NA	chr2:144345506-144365571	inner
CUST_16688_PI429285431	6.0580773	P	7.1938105	P	0.455103567320436	0	lncRNA	18393-1_{1..784}	lnc-RPP30-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPP30-6:4	chr10	 92290369	 92291152	+	lnc-RPP30-6	lnc-RPP30-6:4	XLOC_008556	linc-RPP30-2	NA	NA	NA	inter
CUST_21103_PI429285431	1.3110151	A	1.7132494	A	0.756685497462986	0	lncRNA	22728-1_{1..765}	lnc-BBS4-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BBS4-1:4	chr15	 73084897	 73085661	+	lnc-BBS4-1	lnc-BBS4-1:4	ENSG00000260898.1	RP11-361M10.5	ADPGK	NA	chr15:73074897-73076126	inter
CUST_31512_PI429285431	0.9257982	A	0.91392636	A	1.00826288315066	0	lncRNA	33273-1_{1..1689}	n337999|BC070115|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|386|NULL|-0.4868710|-0.2476239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n337999|BC070115|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|386|NULL|-0.4868710|-0.2476239	chr1	 71512188	 71513876	+	NA	NA	NA	NA	PTGER3	"hg19_refFlat_PTGER3:range=chr1:71477898-715132605'pad=0,hg19_refFlat_PTGER3:range=chr1:71477898-715132605'pad=0 3'pad=0 strand=- repeatMasking=none,-102.60;hg19_refFlat_PTGER3:range=chr1:71419469-715132605'pad=0,hg19_refFlat_PTGER3:range=chr1:71419469-715132605'pad=0 3'pad=0 strand=- repeatMasking=none,-102.60;hg19_refFlat_ZRANB2:range=chr1:71530757-715466785'pad=0,hg19_refFlat_ZRANB2:range=chr1:71530757-715466785'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_PTGER3:range=chr1:71437413-715132605'pad=0,hg19_refFlat_PTGER3:range=chr1:71437413-715132605'pad=0 3'pad=0 strand=- repeatMasking=none,-102.60;hg19_refFlat_PTGER3:range=chr1:71418590-715132605'pad=0,hg19_refFlat_PTGER3:range=chr1:71418590-715132605'pad=0 3'pad=0 strand=- repeatMasking=none,-102.60;hg19_refFlat_ZRANB2:range=chr1:71531402-715466785'pad=0,hg19_refFlat_ZRANB2:range=chr1:71531402-715466785'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_PTGER3:range=chr1:71318522-715132605'pad=0,hg19_refFlat_PTGER3:range=chr1:71318522-715132605'pad=0 3'pad=0 strand=- repeatMasking=none,-102.60chr1:71502188-71513491"	NA	inner
CUST_48723_PI429285431	4.4061837	P	4.3294992	P	1.05459166537455	0	lncRNA	52565-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00014893 range=chr2:130783589-130806521 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014893 range=chr2:130783589-130806521 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	130783589	130786588	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26216_PI429285431	9.503831	P	8.73455	P	1.70442013515863	0	lncRNA	27725-1_{1..667}	lnc-KPNA6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-KPNA6-1:1	chr1	 32641977	 32642643	+	lnc-KPNA6-1	lnc-KPNA6-1:1	ENSG00000250135.1	RP4-622L5.2	KPNA6	NA	chr1:32631977-32642169	inner
CUST_27945_PI429285431	3.5600982	P	3.668591	P	0.927556584855447	0	lncRNA	29549-1_{1..649}	n325192|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329746|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329746|-1.0668600|-0.3130336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325192|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329746|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329746|-1.0668600|-0.3130336	chr2	107345169	107345817	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14980_PI429285431	3.4312668	P	4.4740677	P	0.485384216004514	0	lncRNA	16643-1_{1..367}	lnc-AC092031.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092031.1-1:2	chr7	 96293515	 96293881	-	lnc-AC092031.1-1	lnc-AC092031.1-1:2	XLOC_006529	linc-SLC25A13	NA	NA	NA	inter
CUST_7006_PI429285431	4.276462	P	4.8765993	P	0.659691170178739	0	lncRNA	6953-1_{1..668}	"transcript_id ""ENST00000446364.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446364.1"" | genecode_v17"	chr22	 48537359	 48538026	+	ENSG00000229275.1	ENST00000446364.1	LL22NC03-121E8.3	LL22NC03-121E8.3-001	NA	NA	NA	inter
CUST_43204_PI429285431	2.5963259	A	3.0187354	A	0.746177363790535	0	lncRNA	48018-1_{1..598}	ENST00000589135 havana:sense_intronic chromosome:GRCh37:19:961827:962424:1 gene:ENSG00000267442 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000589135 havana:sense_intronic chromosome:GRCh37:19:961827:962424:1 gene:ENSG00000267442 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	   961827	   962424	+	ENSG00000267442	ENST00000589135	NA	NA	ARID3A	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00chr19:951827-972424"	NA	inner
CUST_32803_PI429285431	1.0009408	A	1.0530794	A	0.964505519895601	0	lncRNA	34438-1_{1..2034}	n339449|AK092064|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1887|NULL|-1.0560800|-0.2959134	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339449|AK092064|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1887|NULL|-1.0560800|-0.2959134	chr3	119147386	119149419	+	NA	NA	NA	NA	ARHGAP31	NA	chr3:119137386-119138323	inter
CUST_51333_PI429285431	0.95549434	A	0.9301787	A	1.01770232572633	0	lncRNA	54935-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00009133 range=chr15:62488223-62516293 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009133 range=chr15:62488223-62516293 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 62488223	 62491222	-	NA	NA	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0,hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70"	NA	inter
CUST_1879_PI429285431	1.679197	A	0.9128403	A	1.70096882519882	0	lncRNA	1869-1_{1..482}	"transcript_id ""ENST00000487657.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000487657.2"" | genecode_v17"	chr4	129504154	129504635	-	ENSG00000248802.1	ENST00000487657.2	RP11-184M15.2	RP11-184M15.2-002	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-61.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10"	NA	inter
CUST_10803_PI429285431	0.92980874	A	1.8871634	A	0.515000357896014	0	lncRNA	12340-1_{1..852}	lnc-KIAA1147-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-KIAA1147-3:6	chr7	141215475	141216326	-	lnc-KIAA1147-3	lnc-KIAA1147-3:6	XLOC_006625	linc-MRPS33-2	NA	NA	NA	inter
CUST_40932_PI429285431	0.91984046	A	0.90910196	A	1.00747113166954	0	lncRNA	41616-1_{1..2048}	n410862|NR_038320|lncRNA|Homosapiens||RefGeneNoncode|NR_038320||4.6004400|-0.2716805	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410862|NR_038320|lncRNA|Homosapiens||RefGeneNoncode|NR_038320||4.6004400|-0.2716805	chr1	 55681080	 55683127	+	NA	NA	NA	NA	USP24	NA	chr1:55671080-55681039	inter
CUST_6666_PI429285431	6.9129186	P	7.008913	P	0.935627129577271	0	lncRNA	6612-1_{1..565}	"transcript_id ""ENST00000437696.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437696.1"" | genecode_v17"	chr20	 22664300	 22664864	-	ENSG00000230400.1	ENST00000437696.1	RP11-359G22.2	RP11-359G22.2-002	NA	NA	NA	inter
LNCA_21_P0013048	0.97427744	A	0.9222482	A	1.03672211270031	0	lncRNA	TCONS_l2_00024523	NA	NA	NA	NA	XLOC_l2_012806	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012806), lincRNA [TCONS_l2_00024523]"	chr6:167562959-167563490	hs|6q27	Agilent_HUMAN_G3V2	TCONS_l2_00024523	TCONS_l2_00024523	chr6	167562959	167563490	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36173_PI429285431	0.922546	A	0.9086377	A	1.00968711823188	0	lncRNA	37444-2_{3001..6000}	n344732|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_281|NULL|-1.3146300|-0.2501053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n344732|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_281|NULL|-1.3146300|-0.2501053	chr21	 40972030	 40975029	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
CUST_40833_PI429285431	1.1030511	A	0.9238573	A	1.13225098934875	0	lncRNA	41536-1_{1..2305}	n410603|NR_037853_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037853_7||0.1460450|-0.1810470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410603|NR_037853_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037853_7||0.1460450|-0.1810470	chr6	  3007657	  3009961	-	NA	NA	NA	NA	NQO2	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NQO2:range=chr6:3006787-30198895'pad=0,hg19_refFlat_NQO2:range=chr6:3006787-30198895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50chr6:3000067-3019994"	NA	inner
CUST_51481_PI429285431	5.2791405	P	3.5567977	P	3.2997181501444	0	lncRNA	55056-1_{1..226}	hg19_lincRNAsTranscripts_TCONS_l2_00009704 range=chr16:34338531-34339155 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009704 range=chr16:34338531-34339155 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 34338531	 34338756	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37884_PI429285431	0.957937	A	0.9203867	A	1.02636956795277	0	lncRNA	38975-1_{1..205}	n346420|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1970|NULL|-1.2992300|-0.2828768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346420|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1970|NULL|-1.2992300|-0.2828768	chr2	 56345216	 56345420	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001711	6.0605407	P	6.5418267	P	0.716338804038282	0	lncRNA	ENST00000553157	XR_108329	XR_108329	NA	Hs.23459	XLOC_000527	NA	ENST00000553157	THC2658163	NA	"PREDICTED: Homo sapiens hypothetical LOC100506696, transcript variant 1 (LOC100506696), miscRNA [XR_108329]"	chr1:202780319-202780378	hs|1q32.1	Agilent_HUMAN_G3V2	ENST00000553157	ENST00000553157	chr1	202780319	202780378	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6959_PI429285431	1.9030685	A	1.7162241	A	1.13827125568621	0	lncRNA	6907-1_{1..2383}	"transcript_id ""ENST00000453934.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453934.1"" | genecode_v17"	chr22	 27444106	 27446488	-	ENSG00000236858.1	ENST00000453934.1	CTA-992D9.6	CTA-992D9.6-001	NA	NA	NA	inter
CUST_45484_PI429285431	0.9303784	A	0.92918825	A	1.00082528948105	0	lncRNA	49898-2_{3001..5535}	"gi|336455082|ref|NR_038884.1| Homo sapiens uncharacterized LOC399708 (LOC399708), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|336455082|ref|NR_038884.1| Homo sapiens uncharacterized LOC399708 (LOC399708), non-coding RNA"	Chr10	  2345513	  2348047	-	399708	NR_038884.1	NA	NA	NA	NA	NA	inter
CUST_25116_PI429285431	2.1320815	A	2.647841	A	0.69942462706352	0	lncRNA	26654-1_{1..517}	lnc-RP11-680F20.4.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-680F20.4.1-2:2	chr11	125808581	125809097	-	lnc-RP11-680F20.4.1-2	lnc-RP11-680F20.4.1-2:2	ENSG00000255027.2	RP11-680F20.9	LOC338667	NA	chr11:125817319-125818811	inter
CUST_4282_PI429285431	1.4496688	A	0.91833097	A	1.44526879098646	0	lncRNA	4238-1_{1..470}	"transcript_id ""ENST00000551729.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551729.1"" | genecode_v17"	chr12	 63686409	 63686878	-	ENSG00000258117.1	ENST00000551729.1	RP11-1022B3.1	RP11-1022B3.1-001	NA	NA	NA	inter
LNCA_21_P0013113	4.4044757	P	4.3180237	P	1.06175580762118	0	lncRNA	TCONS_l2_00025009	NA	NA	NA	NA	XLOC_l2_013189	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013189), lincRNA [TCONS_l2_00025009]"	chr6:160131917-160131858	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_l2_00025009	TCONS_l2_00025009	chr6	160131858	160131917	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16895_PI429285431	3.0832818	P	3.8888702	P	0.572128691280327	0	lncRNA	18603-1_{1..503}	lnc-SLC30A10-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC30A10-1:2	chr1	219610398	219610900	-	lnc-SLC30A10-1	lnc-SLC30A10-1:2	XLOC_001209	linc-GPATCH2-8	NA	NA	NA	inter
CUST_4311_PI429285431	0.91033137	A	0.9011024	A	1.00641753926022	0	lncRNA	4265-1_{1..509}	"transcript_id ""ENST00000545520.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000545520.1"" | genecode_v17"	chr12	 68323015	 68323523	+	ENSG00000255772.1	ENST00000545520.1	GS1-410F4.4	GS1-410F4.4-002	NA	NA	NA	inter
CUST_1477_PI429285431	4.794956	P	5.189435	P	0.760764061501989	0	lncRNA	1464-1_{1..391}	"transcript_id ""ENST00000483262.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000483262.1"" | genecode_v17"	chr3	142842204	142842594	+	ENSG00000241679.2	ENST00000483262.1	RP11-80H8.4	RP11-80H8.4-001	CHST2	NA	chr3:142838668-142841812	inner
CUST_26043_PI429285431	0.90264004	A	0.89705575	A	1.00387823583811	0	lncRNA	27558-1_{1..788}	lnc-SNX7-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNX7-2:2	chr1	 98263024	 98263811	+	lnc-SNX7-2	lnc-SNX7-2:2	ENSG00000235777.1	DPYD-AS2	DPYD	NA	chr1:98253024-98273622	inner
LNCA_21_P0013897	1.1172537	A	1.5534867	A	0.739061845076049	0	lncRNA	TCONS_l2_00030946	NA	NA	NA	NA	XLOC_l2_015952	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015952), lincRNA [TCONS_l2_00030946]"	chrY:22626760-22626701	hs|Yq11.223	Agilent_HUMAN_G3V2	TCONS_l2_00030946	TCONS_l2_00030946	chrY	 22626701	 22626760	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1170_PI429285431	5.01326	P	5.403931	P	0.762774754086703	0	lncRNA	1159-1_{1..838}	"transcript_id ""ENST00000339037.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000339037.3"" | genecode_v17"	chr2	177494893	177495730	-	ENSG00000163364.5	ENST00000339037.3	AC017048.3	AC017048.3-002	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80"	NA	inter
CUST_34215_PI429285431	6.189328	P	5.238269	P	1.9332912557809	0	lncRNA	35728-1_{1..1980}	n341075|AK095141|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3541|NULL|0.4628580|-0.3772392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341075|AK095141|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3541|NULL|0.4628580|-0.3772392	chr11	 77576823	 77578802	+	NA	NA	NA	NA	C11orf67	NA	chr11:77566823-77583398	inner
CUST_48095_PI429285431	6.04357	P	5.589248	P	1.37013875175688	0	lncRNA	51971-1_{1..3000}	"gi|310115168|ref|XR_112958.1| PREDICTED: Homo sapiens uncharacterized LOC100129484 (LOC100129484), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310115168|ref|XR_112958.1| PREDICTED: Homo sapiens uncharacterized LOC100129484 (LOC100129484), misc_RNA"	NA	NA	NA	NA	NA	XR_112958.1	NA	NA	NA	NA	NA	Unknown
CUST_9084_PI429285431	6.45821	P	7.107773	P	0.637473378494341	0	lncRNA	10605-1_{1..649}	lnc-PLAC1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLAC1-1:3	chrX	133680578	133681226	-	lnc-PLAC1-1	lnc-PLAC1-1:3	ENSG00000223749	AC004383.4	NA	NA	NA	inter
CUST_48241_PI429285431	0.92239195	A	0.92030853	A	1.00144515993757	0	lncRNA	52103-1_{1..1155}	hg19_lincRNAsTranscripts_TCONS_l2_00000915 range=chr1:238110308-238164646 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000915 range=chr1:238110308-238164646 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	238110308	238111462	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47378_PI429285431	2.2993464	A	3.02068	A	0.606536512104767	0	lncRNA	51426-1_{1..694}	"gi|392050767|ref|NR_024351.2| Homo sapiens long intergenic non-protein coding RNA 160 (LINC00160), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|392050767|ref|NR_024351.2| Homo sapiens long intergenic non-protein coding RNA 160 (LINC00160), non-coding RNA"	Chr21	 36096105	 36096798	-	54064	NR_024351.2	NA	NA	NA	NA	NA	inter
CUST_44259_PI429285431	3.7462983	P	3.627615	P	1.08574348806209	0	lncRNA	48903-1_{1..2274}	"gi|319004943|ref|NR_037702.1| Homo sapiens ring finger protein 7 (RNF7), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|319004943|ref|NR_037702.1| Homo sapiens ring finger protein 7 (RNF7), transcript variant 5, non-coding RNA"	Chr3	141457051	141459324	+	9616	NR_037702.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80"	NA	inter
CUST_37932_PI429285431	4.6506424	P	3.9288995	P	1.64917317494702	0	lncRNA	39021-1_{1..1577}	n346476|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2026|NULL|-1.3391500|-0.1826741	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346476|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2026|NULL|-1.3391500|-0.1826741	chr12	  9800531	  9802107	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31297_PI429285431	0.9181323	A	0.9151209	A	1.00208952343737	0	lncRNA	33082-1_{1..630}	n337760|AL355694|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|142|NULL|0.2715790|-0.2169000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337760|AL355694|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|142|NULL|0.2715790|-0.2169000	chr15	 51213503	 51214132	+	NA	NA	NA	NA	AP4E1	NA	chr15:51203503-51224133	inner
CUST_24194_PI429285431	0.90403813	A	1.5392311	A	0.643854689173629	0	lncRNA	25745-1_{1..444}	lnc-HENMT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HENMT1-1:1	chr1	109278838	109279281	-	lnc-HENMT1-1	lnc-HENMT1-1:1	ENSG00000232971.1	RP11-293A10.3	FNDC7	NA	chr1:109268838-109285371	inner
CUST_31341_PI429285431	3.7807186	P	4.216505	P	0.739290664128803	0	lncRNA	33123-1_{1..646}	n337809|AF086427|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|191|NULL|2.0170500|-0.1918906	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337809|AF086427|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|191|NULL|2.0170500|-0.1918906	chr1	 29062555	 29063200	-	NA	NA	NA	NA	YTHDF2	NA	chr1:29063133-29073191	inner
CUST_32160_PI429285431	3.2811282	P	3.9085438	P	0.647334993499249	0	lncRNA	33861-1_{1..1760}	n338731|AK022199|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1151|NULL|-1.0354500|-0.2951256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338731|AK022199|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1151|NULL|-1.0354500|-0.2951256	chr13	 51287753	 51289512	+	NA	NA	NA	NA	DLEU7	NA	chr13:51286759-51299476	inner
LNCA_21_P0014540	0.9244703	A	0.9082318	A	1.01131925388461	0	lncRNA	XR_110239	XR_110239	XR_110239	NA	NA	LOC100506919	uncharacterized LOC100506919	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506919, transcript variant 2 (LOC100506919), miscRNA [XR_110239]"	chr14:94442994-94443053	hs|14q32.12	Agilent_HUMAN_G3V2	XR_110239	XR_110239	chr14	 94442994	 94443053	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6465_PI429285431	7.6423173	P	7.64701	P	0.996752552626652	0	lncRNA	6407-1_{1..403}	"transcript_id ""ENST00000597830.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597830.1"" | genecode_v17"	chr19	 35067638	 35068040	-	ENSG00000268751.1	ENST00000597830.1	SCGB1B2P	SCGB1B2P-002	NA	NA	NA	inter
CUST_5794_PI429285431	9.952418	P	9.669633	P	1.21654104809489	0	lncRNA	5716-1_{1..454}	"transcript_id ""ENST00000581118.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581118.1"" | genecode_v17"	chr17	 25660282	 25660735	+	ENSG00000266313.1	ENST00000581118.1	RP11-173M1.4	RP11-173M1.4-001	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10"	NA	inter
CUST_27511_PI429285431	4.9627023	P	4.6136723	P	1.2737039609804	0	lncRNA	29081-2_{3001..5052}	n324689|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320627|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320627|0.1841860|-0.3150029	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324689|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320627|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320627|0.1841860|-0.3150029	chr22	 26039611	 26041662	+	NA	NA	NA	NA	ADRBK2	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-27.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0,hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90chr22:26026611-26053417"	NA	inner
LNCA_21_P0014871	9.661267	P	9.929583	P	0.83028814241679	0	lncRNA	XR_132766	XR_132766	XR_132766	NA	NA	LOC727803	RAN binding protein 1 pseudogene	NA	NA	NA	"PREDICTED: Homo sapiens ran-specific GTPase-activating protein-like (LOC727803), miscRNA [XR_132766]"	chr12:77377946-77377887	hs|12q21.2	Agilent_HUMAN_G3V2	XR_132766	XR_132766	chr12	 77377887	 77377946	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1938_PI429285431	2.8674517	A	2.689918	A	1.13094886465968	0	lncRNA	1930-1_{1..704}	"transcript_id ""ENST00000508106.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508106.1"" | genecode_v17"	chr4	150509142	150509845	-	ENSG00000234828.3	ENST00000508106.1	RP11-526A4.1	RP11-526A4.1-003	LOC285423	NA	chr4:150499142-150736980	inter
CUST_13457_PI429285431	1.3713582	A	0.91094923	A	1.37593180705946	0	lncRNA	15095-1_{1..315}	lnc-CPO-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPO-1:5	chr2	207798065	207798379	+	lnc-CPO-1	lnc-CPO-1:5	XLOC_001823	linc-CPO-1	CPO	NA	chr2:207804278-207808146	inter
CUST_51690_PI429285431	1.3066983	A	1.7721769	A	0.724230780928132	0	lncRNA	55252-1_{1..1654}	hg19_lincRNAsTranscripts_TCONS_l2_00011006 range=chr17:77796265-77800463 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011006 range=chr17:77796265-77800463 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 77796265	 77797918	+	NA	NA	NA	NA	CBX4	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00chr17:77806955-77810463"	NA	inter
CUST_34403_PI429285431	3.1659176	P	2.4128823	A	1.68533489543694	0	lncRNA	35885-1_{1..2479}	n341273|AK172791|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3742|NULL|-1.2043000|-0.4078466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341273|AK172791|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3742|NULL|-1.2043000|-0.4078466	chr7	 92240781	 92243259	-	NA	NA	NA	NA	CDK6	NA	chr7:92234235-92253238	inner
CUST_37980_PI429285431	18.676046	P	18.53019	P	1.10638691556896	0	lncRNA	39067-1_{1..820}	n346535|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2085|NULL|-1.2961200|-0.3298254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346535|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2085|NULL|-1.2961200|-0.3298254	chr16	 33962492	 33963311	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41014_PI429285431	8.215749	P	7.761004	P	1.37054053706078	0	lncRNA	41674-1_{1..1208}	n411619|NR_040088|lncRNA|Homosapiens||RefGeneNoncode|NR_040088||5.3108800|-0.1879150	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411619|NR_040088|lncRNA|Homosapiens||RefGeneNoncode|NR_040088||5.3108800|-0.1879150	chr21	 37415983	 37417190	-	NA	NA	NA	NA	SETD4	NA	chr21:37405983-37432819	inter
CUST_24851_PI429285431	1.6593235	A	1.7023981	A	0.970584280743227	0	lncRNA	26391-1_{1..765}	lnc-XRN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XRN1-1:1	chr3	142190912	142191676	-	lnc-XRN1-1	lnc-XRN1-1:1	ENSG00000244327.1	RP11-383G6.3	ATR	NA	chr3:142180912-142201179	inner
CUST_5138_PI429285431	2.3208585	A	2.5067806	A	0.879087026958762	0	lncRNA	5078-1_{1..493}	"transcript_id ""ENST00000559210.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559210.1"" | genecode_v17"	chr15	 35838584	 35839076	+	ENSG00000248079.2	ENST00000559210.1	ATPBD4-AS1	ATPBD4-AS1-003	ATPBD4	NA	chr15:35828584-35838404	inter
CUST_26662_PI429285431	0.9076469	A	0.8958882	A	1.00818381558166	0	lncRNA	28162-1_{1..443}	lnc-INSL6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-INSL6-1:1	chr9	  5164179	  5164621	-	lnc-INSL6-1	lnc-INSL6-1:1	ENSG00000249864.1	RP11-39K24.10	INSL6	NA	chr9:5163863-5174251	inner
CUST_32957_PI429285431	1.4368086	A	1.8070796	A	0.773637160884501	0	lncRNA	34575-2_{3001..3643}	n339633|AF132204|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2077|NULL|-0.0346050|-0.4389568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339633|AF132204|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2077|NULL|-0.0346050|-0.4389568	chr3	144163697	144164339	-	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-18.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.22;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00"	NA	inter
CUST_28073_PI429285431	1.212657	A	1.4203148	A	0.865941938229902	0	lncRNA	29692-1_{1..1923}	n325340|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326757|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326757|-0.9148730|-0.2629361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325340|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326757|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326757|-0.9148730|-0.2629361	chr2	 37906893	 37908815	-	NA	NA	NA	NA	CDC42EP3	NA	chr2:37896893-37899326	inter
CUST_1266_PI429285431	0.99036777	A	1.3624661	A	0.772657885684405	0	lncRNA	1258-1_{1..538}	"transcript_id ""ENST00000439798.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439798.1"" | genecode_v17"	chr2	235353234	235353771	-	ENSG00000231682.1	ENST00000439798.1	AC097713.4	AC097713.4-001	NA	NA	NA	inter
CUST_26868_PI429285431	1.108668	A	0.9032179	A	1.15304602438229	0	lncRNA	28385-1_{1..450}	n323943|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054945|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054945|-0.9860610|-0.2710076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323943|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054945|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054945|-0.9860610|-0.2710076	chr9	136537138	136537587	-	NA	NA	NA	NA	SARDH	NA	chr9:136528682-136563109	inner
CUST_20818_PI429285431	6.6630144	P	6.198937	P	1.37943492596256	0	lncRNA	22449-1_{1..2147}	lnc-ANGPT2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ANGPT2-1:4	chr8	  6505804	  6507950	-	lnc-ANGPT2-1	lnc-ANGPT2-1:4	ENSG00000249898.3	CTD-2541M15.1	MCPH1	"hg19_refFlat_MCPH1:range=chr8:6264189-65005705'pad=0,hg19_refFlat_MCPH1:range=chr8:6264189-65005705'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.10chr8:6495804-6501140"	NA	inter
CUST_34022_PI429285431	1.082456	A	1.000449	A	1.05848953068591	0	lncRNA	35555-1_{1..1948}	n340839|AY309078|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3303|NULL|-1.0175400|-0.3498803	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340839|AY309078|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3303|NULL|-1.0175400|-0.3498803	chr6	 10017502	 10019449	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30"	NA	inter
LNCA_21_P0003292	0.9266481	A	0.9158209	A	1.00753307506991	0	lncRNA	TCONS_00007208	NA	NA	NA	NA	XLOC_003187	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003187), lincRNA [TCONS_00007208]"	chr3:97950084-97950025	hs|3q11.2	Agilent_HUMAN_G3V2	TCONS_00007208	TCONS_00007208	chr3	 97950025	 97950084	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9332_PI429285431	0.89932585	A	0.8966161	A	1.0018800205994	0	lncRNA	10840-1_{1..1117}	lnc-ATOH8-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATOH8-2:5	chr2	 86118821	 86119937	+	lnc-ATOH8-2	lnc-ATOH8-2:5	XLOC_001558	linc-PTCD3-2	ST3GAL5	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10chr2:86108821-86116157"	NA	inter
CUST_45030_PI429285431	1.5146474	A	1.1596475	A	1.27898549262491	0	lncRNA	49528-2_{3001..3700}	"gi|239787136|ref|NR_003561.2| Homo sapiens dpy-19-like 2 pseudogene 2 (C. elegans) (DPY19L2P2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239787136|ref|NR_003561.2| Homo sapiens dpy-19-like 2 pseudogene 2 (C. elegans) (DPY19L2P2), transcript variant 2, non-coding RNA"	Chr7	102818460	102819159	-	349152	NR_003561.2	NA	NA	NA	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80"	NA	inter
CUST_24507_PI429285431	5.9253488	P	6.104448	P	0.883254316649681	0	lncRNA	26058-1_{1..732}	lnc-MAP1LC3B2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP1LC3B2-1:2	chr12	116992100	116992831	+	lnc-MAP1LC3B2-1	lnc-MAP1LC3B2-1:2	ENSG00000258102.1	RP11-809C9.2	MAP1LC3B2	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90chr12:116997186-117002186"	NA	inter
CUST_40282_PI429285431	4.6363993	P	5.4551425	P	0.566935612058378	0	lncRNA	41089-2_{3001..5084}	n408227|NR_028388|lncRNA|Homosapiens||RefGeneNoncode|NR_028388||3.3356000|-0.2502145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408227|NR_028388|lncRNA|Homosapiens||RefGeneNoncode|NR_028388||3.3356000|-0.2502145	chr16	 31194430	 31196513	+	NA	NA	NA	NA	FUS	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr16:31191431-31206192"	NA	inner
CUST_42671_PI429285431	7.584028	P	7.6942844	P	0.926423400571014	0	lncRNA	45581-1_{1..72}	ENST00000365423 ncrna:snoRNA chromosome:GRCh37:14:101449263:101449334:1 gene:ENSG00000202293 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365423 ncrna:snoRNA chromosome:GRCh37:14:101449263:101449334:1 gene:ENSG00000202293 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101449263	101449334	+	ENSG00000202293	ENST00000365423	NA	NA	NA	NA	NA	inter
CUST_46387_PI429285431	0.9111178	A	0.91793317	A	0.995287086295341	0	lncRNA	50604-1_{1..1097}	"gi|410170663|ref|XR_159027.2| PREDICTED: Homo sapiens uncharacterized LOC100996339 (LOC100996339), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|410170663|ref|XR_159027.2| PREDICTED: Homo sapiens uncharacterized LOC100996339 (LOC100996339), misc_RNA"	NA	NA	NA	NA	NA	XR_159027.2	NA	NA	NA	NA	NA	Unknown
CUST_27733_PI429285431	3.5859582	P	3.6948144	P	0.927322972342609	0	lncRNA	29315-1_{1..486}	n324949|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000259163|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000259163|-1.2471400|-0.2660162	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324949|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000259163|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000259163|-1.2471400|-0.2660162	chr20	 50721862	 50722347	+	NA	NA	NA	NA	ZFP64	"hg19_refFlat_ERP29:range=chr12:112451270-1124604565'pad=0,hg19_refFlat_ERP29:range=chr12:112451270-1124604565'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10chr20:50711862-50750554"	NA	inner
CUST_39260_PI429285431	0.9238618	A	1.0654984	A	0.906490245054724	0	lncRNA	40231-1_{1..476}	n386149|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010brs.1||-1.0073200|-0.2102899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386149|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010brs.1||-1.0073200|-0.2102899	chr16	  1603655	  1604130	-	NA	NA	NA	NA	IFT140	NA	chr16:1593655-1614131	inner
CUST_7301_PI429285431	0.928545	A	0.9201981	A	1.00580239928414	0	lncRNA	8363-1_{1..319}	"transcript_id ""ENST00000517003.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517003.1"" | genecode_v17"	chr13	 40981259	 40981577	-	ENSG00000252812.1	ENST00000517003.1	RN7SKP2	RN7SKP2-201	NA	NA	NA	inter
CUST_4772_PI429285431	0.9273443	A	1.1821231	A	0.838115628188724	0	lncRNA	4718-1_{1..531}	"transcript_id ""ENST00000555655.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555655.1"" | genecode_v17"	chr14	 38660188	 38660718	+	ENSG00000258649.1	ENST00000555655.1	CTD-2142D14.1	CTD-2142D14.1-001	SSTR1	NA	chr14:38677204-38682128	inter
CUST_50138_PI429285431	1.8161421	A	2.2909718	A	0.719551723011186	0	lncRNA	53864-1_{1..1436}	hg19_lincRNAsTranscripts_TCONS_l2_00028588 range=chr9:11236-13811 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028588 range=chr9:11236-13811 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	    11236	    12671	+	NA	NA	NA	NA	WASH1	NA	chr9:11987-23811	inter
CUST_10890_PI429285431	3.7704759	P	4.1144543	P	0.787865681869565	0	lncRNA	12431-1_{1..244}	lnc-TCF7-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF7-3:1	chr5	133156433	133156676	+	lnc-TCF7-3	lnc-TCF7-3:1	XLOC_004554	linc-TCF7-3	NA	NA	NA	inter
CUST_12763_PI429285431	0.92114854	A	0.9136642	A	1.00520122883971	0	lncRNA	14386-1_{1..263}	lnc-LY86-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LY86-5:1	chr6	  6760034	  6760296	+	lnc-LY86-5	lnc-LY86-5:1	XLOC_005150	linc-RREB1-4	NA	NA	NA	inter
CUST_9686_PI429285431	4.6570134	P	4.824059	P	0.890664748465553	0	lncRNA	11203-1_{1..856}	lnc-GPA33-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPA33-1:1	chr1	167164894	167165749	-	lnc-GPA33-1	lnc-GPA33-1:1	XLOC_001080	linc-GPA33	POU2F1	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90chr1:167154894-167175029"	NA	inter
CUST_2258_PI429285431	0.90117556	A	0.9865417	A	0.942545298018986	0	lncRNA	2250-1_{1..511}	"transcript_id ""ENST00000512210.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512210.1"" | genecode_v17"	chr5	 91745963	 91746473	-	ENSG00000249776.1	ENST00000512210.1	RP11-133F8.2	RP11-133F8.2-002	NA	NA	NA	inter
CUST_48521_PI429285431	2.5879788	A	2.7149396	A	0.915758568494502	0	lncRNA	52373-1_{1..487}	hg19_lincRNAsTranscripts_TCONS_l2_00013502 range=chr2:20314686-20317929 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013502 range=chr2:20314686-20317929 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 20314686	 20315172	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002646	1.6288428	A	2.0447817	A	0.749531543835416	0	lncRNA	TCONS_00005070	NA	NA	NA	NA	XLOC_001964	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001964), lincRNA [TCONS_00005070]"	chr2:6790288-6778921	hs|2p25.2	Agilent_HUMAN_G3V2	TCONS_00005070	TCONS_00005070	chr2	  6778921	  6790288	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36945_PI429285431	1.8682324	A	2.2313273	A	0.777494890845073	0	lncRNA	38100-1_{1..913}	n345416|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_965|NULL|-1.3181200|-0.0337629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345416|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_965|NULL|-1.3181200|-0.0337629	chr22	 42310141	 42311053	-	NA	NA	NA	NA	SREBF2	NA	chr22:42300141-42302375	inner
CUST_29931_PI429285431	9.876776	P	8.0892935	P	3.45211972418154	0	lncRNA	31695-1_{1..460}	n334112|M59227|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195889|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195889|0.4459480|-0.1642215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334112|M59227|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195889|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195889|0.4459480|-0.1642215	chr2	189868164	189868623	+	NA	NA	NA	NA	COL3A1	NA	chr2:189858164-189877472	inner
CUST_31085_PI429285431	2.0240498	A	1.8903224	A	1.09712461418889	0	lncRNA	32876-1_{1..479}	n337363|DQ642692|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000392991|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000392991|0.7861810|-0.0974509	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337363|DQ642692|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000392991|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000392991|0.7861810|-0.0974509	chr3	123471324	123471802	-	NA	NA	NA	NA	MYLK	NA	chr3:123461324-123528931	inner
CUST_3311_PI429285431	1.0034077	A	2.28769	A	0.410575003067188	0	lncRNA	3290-1_{1..683}	"transcript_id ""ENST00000522667.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522667.1"" | genecode_v17"	chr8	130691381	130692063	-	ENSG00000254223.1	ENST00000522667.1	RP11-419K12.1	RP11-419K12.1-001	NA	NA	NA	inter
CUST_11612_PI429285431	2.960964	A	2.966762	A	0.995989197487056	0	lncRNA	13192-1_{1..1050}	lnc-PTPN20B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPN20B-2:1	chr10	 49018309	 49019358	-	lnc-PTPN20B-2	lnc-PTPN20B-2:1	XLOC_008814	linc-PTPN20B-1	FAM25C	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60chr10:49008309-49028413"	NA	inter
CUST_3541_PI429285431	5.6633434	P	5.6558614	P	1.00519959844042	0	lncRNA	3511-1_{1..736}	"transcript_id ""ENST00000602859.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602859.1"" | genecode_v17"	chr9	129462577	129463312	+	ENSG00000269909.1	ENST00000602859.1	RP11-489N22.3	RP11-489N22.3-001	LMX1B	NA	chr9:129452577-129463311	inner
CUST_14432_PI429285431	3.8189197	P	4.640498	P	0.565822597292676	0	lncRNA	16093-1_{1..358}	lnc-CRISP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRISP2-1:1	chr6	 49646399	 49646756	-	lnc-CRISP2-1	lnc-CRISP2-1:1	XLOC_005739	linc-RHAG	NA	NA	NA	inter
CUST_35150_PI429285431	6.108631	P	6.5258236	P	0.748880484883613	0	lncRNA	36552-1_{1..1266}	n342122|BC020441|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4605|NULL|2.7291700|-0.1604679	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342122|BC020441|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4605|NULL|2.7291700|-0.1604679	chr6	127836935	127838200	-	NA	NA	NA	NA	C6orf174	NA	chr6:127826935-127840500	inner
LNCA_21_P0002139	4.2101874	P	4.729398	P	0.697753518803198	0	lncRNA	ENST00000449783	NA	AK307257	NA	Hs.694592	XLOC_002484	NA	ENST00000449783	NA	NA	"BROAD Institute lincRNA (XLOC_002484), lincRNA [TCONS_00003496]"	chr2:217455211-217455152	hs|2q35	Agilent_HUMAN_G3V2	ENST00000449783	ENST00000449783	chr2	217455152	217455211	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4842_PI429285431	0.9261292	A	0.92484957	A	1.00088736540258	0	lncRNA	4785-1_{1..834}	"transcript_id ""ENST00000557136.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557136.1"" | genecode_v17"	chr14	 57352389	 57353222	-	ENSG00000258776.1	ENST00000557136.1	RP11-1085N6.5	RP11-1085N6.5-003	NA	NA	NA	inter
CUST_27141_PI429285431	6.5188537	P	6.4028597	P	1.08372145976456	0	lncRNA	28677-1_{1..608}	n324257|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322975|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322975|0.0706717|-0.2544146	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324257|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322975|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322975|0.0706717|-0.2544146	chr7	  2390281	  2390888	+	NA	NA	NA	NA	EIF3B	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60chr7:2394474-2404758"	NA	inner
CUST_35974_PI429285431	3.712291	P	4.000061	P	0.819167282253601	0	lncRNA	37321-1_{1..539}	n344596|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_144|NULL|-1.2788200|-0.2349098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344596|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_144|NULL|-1.2788200|-0.2349098	chr12	114173983	114174521	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10401_PI429285431	3.4145834	P	3.9680233	P	0.681393504558811	0	lncRNA	11928-1_{1..241}	lnc-C19orf12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C19orf12-1:1	chr19	 30187151	 30187391	-	lnc-C19orf12-1	lnc-C19orf12-1:1	XLOC_013291	linc-UQCRFS1-2	C19orf12	NA	chr19:30189793-30197171	inter
CUST_47305_PI429285431	7.9158726	P	7.8947105	P	1.01477655961532	0	lncRNA	51369-3_{6001..6243}	"gi|386781498|ref|NR_048537.1| Homo sapiens solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 (SLC9A8), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386781498|ref|NR_048537.1| Homo sapiens solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 (SLC9A8), transcript variant 3, non-coding RNA"	Chr20	 48435250	 48435492	+	23315	NR_048537.1	NA	NA	NA	NA	NA	inter
LNCA_19_P00320066	1.0402137	A	0.98651755	A	1.03792064817794	0	lncRNA	XR_132521	XR_132521	XR_132521	NA	NA	LOC100508120	NA	NA	THC2522321	NA	"PREDICTED: Homo sapiens hypothetical LOC100508120, transcript variant 1 (LOC100508120), miscRNA [XR_132521]"	chr6:2412976-2413035	hs|6p25.2	Agilent_HUMAN_G3V2	XR_132521	XR_132521	chr6	  2412976	  2413035	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42561_PI429285431	7.695651	P	7.6710076	P	1.01722822633222	0	lncRNA	45382-1_{1..138}	ENST00000383876 ncrna:snoRNA chromosome:GRCh37:7:56123058:56123195:1 gene:ENSG00000206603 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000383876 ncrna:snoRNA chromosome:GRCh37:7:56123058:56123195:1 gene:ENSG00000206603 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 56123058	 56123195	+	ENSG00000206603	ENST00000383876	NA	NA	PSPH	NA	chr7:56113058-56119268	inner
CUST_16739_PI429285431	5.4056835	P	5.050659	P	1.27900730133047	0	lncRNA	18446-1_{1..1083}	lnc-ZIC5-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZIC5-3:1	chr13	100740887	100741969	-	lnc-ZIC5-3	lnc-ZIC5-3:1	XLOC_010709	linc-ZIC5	PCCA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20chr13:100730887-100751196"	NA	inter
CUST_32941_PI429285431	3.4770849	P	3.7825313	P	0.809191796951658	0	lncRNA	34562-1_{1..1851}	n339613|BC019031|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2057|NULL|0.3208400|-0.1924434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339613|BC019031|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2057|NULL|0.3208400|-0.1924434	chr20	 25021537	 25023387	-	NA	NA	NA	NA	ACSS1	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50chr20:25011537-25033358"	NA	inner
CUST_12010_PI429285431	2.7448025	A	1.6133566	A	2.1907819514176	0	lncRNA	13591-1_{1..479}	lnc-ONECUT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ONECUT1-1:1	chr15	 53098276	 53098754	-	lnc-ONECUT1-1	lnc-ONECUT1-1:1	XLOC_011481	linc-ONECUT1	NA	NA	NA	inter
CUST_249_PI429201921	0.91817313	A	0.91075295	A	1.0051565261999	0	lncRNA	188-2_{3001..6000}	TC07002271.hg.1	TCONS_l2_00025816-XLOC_l2_013360 // Broad TUCP // linc-CDK13-1 chr7:+:39899607-39905982 // chr7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr7:+:39899607-39905982	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00025816-XLOC_l2_013360	linc-CDK13-1	chr7	 39899607	 39905982	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19571_PI429285431	2.5939972	A	1.9269277	A	1.58784435240448	0	lncRNA	21227-1_{1..1428}	lnc-AC112512.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AC112512.1-1:1	chr3	 47644835	 47646262	-	lnc-AC112512.1-1	lnc-AC112512.1-1:1	ENSG00000214773.1	RP11-717D12.1	SMARCC1	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr3:47634835-47656167"	NA	inner
CUST_43690_PI429285431	0.9158187	A	0.91206515	A	1.00260515012111	0	lncRNA	48441-1_{1..3000}	"gi|384081582|ref|NR_047563.1| Homo sapiens crumbs homolog 1 (Drosophila) (CRB1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384081582|ref|NR_047563.1| Homo sapiens crumbs homolog 1 (Drosophila) (CRB1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NR_047563.1	NA	NA	NA	NA	NA	Unknown
CUST_22774_PI429285431	1.3164825	A	1.5474124	A	0.852085496577251	0	lncRNA	24354-1_{1..477}	lnc-C12orf61-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C12orf61-3:1	chr12	 62539362	 62539838	-	lnc-C12orf61-3	lnc-C12orf61-3:1	ENSG00000257880.1	RP11-769N19.2	FAM19A2	NA	chr12:62529362-62549424	inner
CUST_14533_PI429285431	1.1294681	A	0.92181146	A	1.15481090798503	0	lncRNA	16201-1_{1..635}	lnc-SERPING1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERPING1-1:1	chr11	 57388367	 57389001	+	lnc-SERPING1-1	lnc-SERPING1-1:1	XLOC_009135	linc-CLP1	SERPING1	"hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.01;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00chr11:57378367-57382326"	NA	inter
CUST_46009_PI429285431	4.7664375	P	4.713793	P	1.03716433344667	0	lncRNA	50293-1_{1..977}	"gi|333360902|ref|NR_038227.1| Homo sapiens uncharacterized LOC100506451 (LOC100506451), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333360902|ref|NR_038227.1| Homo sapiens uncharacterized LOC100506451 (LOC100506451), transcript variant 1, non-coding RNA"	Chr12	 26107587	 26108563	-	100506451	NR_038227.1	NA	NA	NA	NA	NA	inter
CUST_42871_PI429285431	0.9138633	A	0.90814453	A	1.00397181613995	0	lncRNA	45935-1_{1..76}	ENST00000364764 ncrna:snoRNA chromosome:GRCh37:15:25514930:25515005:1 gene:ENSG00000201634 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364764 ncrna:snoRNA chromosome:GRCh37:15:25514930:25515005:1 gene:ENSG00000201634 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 25514930	 25515005	+	ENSG00000201634	ENST00000364764	NA	NA	SNRPN	NA	chr15:25504930-25525005	inter
CUST_6643_PI429285431	0.9195346	A	0.92499936	A	0.996219281992767	0	lncRNA	6589-1_{1..1105}	"transcript_id ""ENST00000444792.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444792.1"" | genecode_v17"	chr20	 11214818	 11215922	-	ENSG00000230990.1	ENST00000444792.1	RP4-734C18.1	RP4-734C18.1-002	NA	NA	NA	inter
CUST_24776_PI429285431	1.2334399	A	1.6391927	A	0.754842312378087	0	lncRNA	26319-1_{1..503}	lnc-STC1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STC1-3:4	chr8	 24371921	 24372423	-	lnc-STC1-3	lnc-STC1-3:4	ENSG00000253643.1	RP11-561E1.1	ADAM7	NA	chr8:24361921-24366281	inter
CUST_27607_PI429285431	3.9176595	P	4.4017577	P	0.714943827405111	0	lncRNA	29186-1_{1..3000}	n324811|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141032|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141032|1.5746900|-0.2886780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324811|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141032|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141032|1.5746900|-0.2886780	chr21	 34225333	 34228332	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80"	NA	inter
CUST_20450_PI429285431	1.1200229	A	0.90658486	A	1.15944793722658	0	lncRNA	22094-1_{1..478}	lnc-UBE2R2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBE2R2-1:1	chr9	 33984571	 33985048	+	lnc-UBE2R2-1	lnc-UBE2R2-1:1	ENSG00000235983.1	RP11-176F3.8	UBAP2	NA	chr9:33974571-33994662	inner
CUST_32449_PI429285431	0.9260999	A	1.0183282	A	0.938072738963759	0	lncRNA	34121-1_{1..1005}	n339048|AK097482|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1477|NULL|-1.0177700|-0.2586691	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339048|AK097482|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1477|NULL|-1.0177700|-0.2586691	chr2	182555106	182556110	-	NA	NA	NA	NA	NEUROD1	NA	chr2:182545106-182545392	inter
CUST_36407_PI429285431	0.9309716	A	1.0895002	A	0.895938369755343	0	lncRNA	37625-1_{1..3000}	n344924|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_473|NULL|-1.4079700|-0.3485762	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344924|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_473|NULL|-1.4079700|-0.3485762	chr6	126391001	126394000	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50"	NA	inter
CUST_5183_PI429285431	4.2978086	P	4.1134076	P	1.13634507030229	0	lncRNA	5124-1_{1..561}	"transcript_id ""ENST00000559909.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559909.1"" | genecode_v17"	chr15	 51329685	 51330245	+	ENSG00000259240.1	ENST00000559909.1	RP11-108K3.1	RP11-108K3.1-001	TNFAIP8L3	NA	chr15:51348798-51397473	inner
CUST_42933_PI429285431	0.9233798	A	0.92889	A	0.996187904958812	0	lncRNA	46047-1_{1..135}	ENST00000515921 ncrna:snoRNA chromosome:GRCh37:3:183171916:183172050:1 gene:ENSG00000251730 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515921 ncrna:snoRNA chromosome:GRCh37:3:183171916:183172050:1 gene:ENSG00000251730 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	183171916	183172050	+	ENSG00000251730	ENST00000515921	NA	NA	NA	NA	NA	inter
CUST_29663_PI429285431	1.2657664	A	0.9658188	A	1.23109969786876	0	lncRNA	31425-1_{1..480}	n333291|AY063454|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084126|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084126|-1.4653300|-0.3905259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n333291|AY063454|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084126|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084126|-1.4653300|-0.3905259	chr21	 31462035	 31462514	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17454_PI429285431	5.9025908	P	5.9417014	P	0.973254759565762	0	lncRNA	19178-1_{1..473}	lnc-ANTXRL-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANTXRL-3:1	chr10	 47575601	 47576073	+	lnc-ANTXRL-3	lnc-ANTXRL-3:1	XLOC_008479	linc-ANXA8L2-2	NA	NA	NA	inter
CUST_23334_PI429285431	5.184923	P	5.4678116	P	0.821943652535416	0	lncRNA	24905-1_{1..3000}	lnc-RP11-210M15.2.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-210M15.2.1-4:1	chr15	 80544349	 80547348	-	lnc-RP11-210M15.2.1-4	lnc-RP11-210M15.2.1-4:1	ENSG00000259417.2	RP11-2E17.1	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60"	NA	inter
CUST_25647_PI429285431	5.290032	P	4.061651	P	2.3430390517572	0	lncRNA	27176-1_{1..429}	lnc-ITGBL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITGBL1-1:1	chr13	102375231	102375659	+	lnc-ITGBL1-1	lnc-ITGBL1-1:1	ENSG00000232584.1	RP11-397O8.4	FGF14	"hg19_refFlat_FGF14:range=chr13:102375181-1025689955'pad=0,hg19_refFlat_FGF14:range=chr13:102375181-1025689955'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_FGF14:range=chr13:102375181-1030540285'pad=0,hg19_refFlat_FGF14:range=chr13:102375181-1030540285'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90chr13:102373205-102385456"	NA	inner
CUST_24491_PI429285431	2.7359014	A	2.0297673	A	1.63142662242676	0	lncRNA	26043-1_{1..785}	lnc-CLEC14A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLEC14A-1:1	chr14	 38663347	 38664131	-	lnc-CLEC14A-1	lnc-CLEC14A-1:1	ENSG00000259048.1	CTD-2058B24.2	NA	NA	NA	inter
CUST_36934_PI429285431	0.9172587	A	1.2028234	A	0.820420416819892	0	lncRNA	38089-1_{1..3000}	n345405|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_954|NULL|-1.3357300|-0.2913457	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345405|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_954|NULL|-1.3357300|-0.2913457	chr22	 17848274	 17851273	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60"	NA	inter
CUST_30742_PI429285431	0.9186694	A	0.9171588	A	1.00104761649816	0	lncRNA	32527-1_{1..239}	n336309|Y18488|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326090_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326090_10|-1.2412600|-0.5228219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336309|Y18488|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326090_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326090_10|-1.2412600|-0.5228219	chr6	  2848617	  2848855	+	NA	NA	NA	NA	SERPINB1	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-29.81;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr6:2838617-2842081"	NA	inter
CUST_25035_PI429285431	0.9159018	A	0.9113127	A	1.00318598622632	0	lncRNA	26574-1_{1..733}	lnc-AC040934.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC040934.1-3:2	chr17	 45726762	 45727494	-	lnc-AC040934.1-3	lnc-AC040934.1-3:2	ENSG00000263766.1	RP11-580I16.2	KPNB1	NA	chr17:45727275-45736782	inter
CUST_22360_PI429285431	0.9215178	A	0.9083805	A	1.00914766895821	0	lncRNA	23954-1_{1..472}	lnc-ANKRD6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD6-1:1	chr6	 90385115	 90385586	+	lnc-ANKRD6-1	lnc-ANKRD6-1:1	ENSG00000228124.1	RP1-122O8.7	MDN1	"hg19_refFlat_MDN1:range=chr6:90353724-905293265'pad=0,hg19_refFlat_MDN1:range=chr6:90353724-905293265'pad=0 3'pad=0 strand=- repeatMasking=none,-94.80chr6:90375115-90395502"	NA	inner
CUST_2032_PI429285431	6.5938807	P	6.6674757	P	0.950267108796602	0	lncRNA	2023-1_{1..654}	"transcript_id ""ENST00000503067.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503067.1"" | genecode_v17"	chr5	  1364229	  1364882	-	ENSG00000250584.2	ENST00000503067.1	RP11-325I22.2	RP11-325I22.2-002	NA	NA	NA	inter
CUST_6563_PI429285431	0.9154594	A	0.9203119	A	0.996642153524732	0	lncRNA	6512-1_{1..915}	"transcript_id ""ENST00000594261.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594261.1"" | genecode_v17"	chr19	 51774534	 51775448	+	ENSG00000268318.1	ENST00000594261.1	CTD-3187F8.11	CTD-3187F8.11-003	IGLON5	NA	chr19:51784089-51794488	inter
CUST_32780_PI429285431	3.2009783	A	0.9089266	A	4.89752107259729	0	lncRNA	34414-1_{1..2408}	n339419|AK125090|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1851|NULL|-1.1279100|-0.3209074	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339419|AK125090|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1851|NULL|-1.1279100|-0.3209074	chr3	110917881	110920288	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32039_PI429285431	2.1815333	A	2.21256	A	0.978723536964236	0	lncRNA	33754-1_{1..274}	n338601|U82311|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1007|NULL|1.3535400|-0.1339619	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338601|U82311|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1007|NULL|1.3535400|-0.1339619	chr13	 25715673	 25715946	+	NA	NA	NA	NA	C13orf41	NA	chr13:25705673-25716046	inter
CUST_21685_PI429285431	0.9295778	A	0.92620647	A	1.00233956039457	0	lncRNA	23295-1_{1..612}	lnc-MAPK6-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAPK6-9:1	chr15	 52890739	 52891350	+	lnc-MAPK6-9	lnc-MAPK6-9:1	ENSG00000260618.1	RP11-23N2.4	KIAA1370	"hg19_refFlat_FAM214A:range=chr15:52874351-529702185'pad=0,hg19_refFlat_FAM214A:range=chr15:52874351-529702185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chr15:52880739-52900906"	NA	inner
CUST_46693_PI429285431	7.902251	P	7.847101	P	1.03896712125176	0	lncRNA	50854-1_{1..2447}	"gi|212276003|ref|NR_024402.1| Homo sapiens uncharacterized LOC197187 (MGC23284), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|212276003|ref|NR_024402.1| Homo sapiens uncharacterized LOC197187 (MGC23284), transcript variant 1, non-coding RNA"	Chr16	 88729781	 88732227	+	197187	NR_024402.1	NA	NA	NA	NA	NA	inter
CUST_50823_PI429285431	9.886354	P	9.489655	P	1.31649222401924	0	lncRNA	54473-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00004561 range=chr11:65222665-65229598 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004561 range=chr11:65222665-65229598 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65222665	 65225664	+	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-26.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60"	NA	inter
CUST_50035_PI429285431	0.8961788	A	0.89312255	A	1.00212067653102	0	lncRNA	53771-1_{1..644}	hg19_lincRNAsTranscripts_TCONS_l2_00027730 range=chr8:39389123-39409759 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027730 range=chr8:39389123-39409759 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 39389123	 39389766	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15980_PI429285431	4.1935673	P	4.0302205	P	1.11988205740492	0	lncRNA	17679-1_{1..513}	lnc-ITM2C-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITM2C-1:5	chr2	231752096	231752608	+	lnc-ITM2C-1	lnc-ITM2C-1:5	XLOC_001897	linc-SPATA3	ITM2C	NA	chr2:231742096-231743963	inter
CUST_50606_PI429285431	0.9141998	A	0.90515935	A	1.00628603715238	0	lncRNA	54293-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00002835 range=chr10:973603-988855 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002835 range=chr10:973603-988855 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	   973603	   976602	+	NA	NA	NA	NA	NA	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.21;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00"	NA	inner
CUST_16105_PI429285431	5.8407073	P	6.0401764	P	0.870870977749458	0	lncRNA	17812-1_{1..381}	lnc-TTC21A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC21A-1:2	chr3	 39222703	 39223083	+	lnc-TTC21A-1	lnc-TTC21A-1:2	XLOC_002616	linc-CCR8-3	XIRP1	NA	chr3:39224706-39233012	inter
CUST_32400_PI429285431	3.0286376	A	3.2426834	P	0.862116175721603	0	lncRNA	34076-1_{1..1369}	n338993|BC037813|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1422|NULL|-1.1124800|-0.2745044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338993|BC037813|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1422|NULL|-1.1124800|-0.2745044	chr2	161705832	161707200	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26425_PI429285431	5.8018394	P	6.2181034	P	0.749362661815868	0	lncRNA	27932-1_{1..519}	lnc-PAXIP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAXIP1-3:1	chr7	153757884	153758402	-	lnc-PAXIP1-3	lnc-PAXIP1-3:1	ENSG00000203335.3	AC006019.3	DPP6	NA	chr7:153747884-153768033	inner
CUST_33097_PI429285431	4.808777	P	4.9721546	P	0.892932112522591	0	lncRNA	34699-3_{6001..7979}	n339785|X58531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2232|NULL|14.7879000|-0.2446200	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339785|X58531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2232|NULL|14.7879000|-0.2446200	chr18	  6964554	  6966532	-	NA	NA	NA	NA	LAMA1	NA	chr18:6948554-7117813	inner
CUST_339_PI429285431	0.928005	A	0.9896864	A	0.958146788827593	0	lncRNA	332-1_{1..931}	"transcript_id ""ENST00000414418.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414418.1"" | genecode_v17"	chr1	103228878	103229808	-	ENSG00000230864.1	ENST00000414418.1	RP5-936J12.1	RP5-936J12.1-001	NA	NA	NA	inter
CUST_1561_PI429285431	5.7214956	P	5.9044504	P	0.880896972419273	0	lncRNA	1549-1_{1..678}	"transcript_id ""ENST00000428516.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428516.1"" | genecode_v17"	chr3	176361729	176362406	-	ENSG00000232461.1	ENST00000428516.1	RP11-644C3.1	RP11-644C3.1-001	NA	NA	NA	inter
CUST_40462_PI429285431	2.8885612	A	4.449532	P	0.338922941396233	0	lncRNA	41233-1_{1..1625}	n409383|NR_033769|lncRNA|Homosapiens||RefGeneNoncode|NR_033769||3.7619800|-0.2653863	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409383|NR_033769|lncRNA|Homosapiens||RefGeneNoncode|NR_033769||3.7619800|-0.2653863	chr15	 93338713	 93340337	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41130_PI429285431	6.280171	P	6.0835943	P	1.14597589652284	0	lncRNA	41911-1_{1..63}	ENST00000581341 ncrna:miRNA chromosome:GRCh37:4:109710356:109710418:-1 gene:ENSG00000265522 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581341 ncrna:miRNA chromosome:GRCh37:4:109710356:109710418:-1 gene:ENSG00000265522 gene_biotype:miRNA transcript_biotype:miRNA	chr4	109710356	109710418	-	ENSG00000265522	ENST00000581341	NA	NA	NA	NA	NA	inter
CUST_39663_PI429285431	8.032303	P	7.661268	P	1.29328030668285	0	lncRNA	40603-1_{1..1827}	n405292|NR_001434|lncRNA|Homosapiens||RefGeneNoncode|NR_001434||-0.8726940|-0.2912987	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405292|NR_001434|lncRNA|Homosapiens||RefGeneNoncode|NR_001434||-0.8726940|-0.2912987	chr6	  1097260	  1099086	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3319_PI429285431	1.5875149	A	1.5710573	A	1.01147285313366	0	lncRNA	3298-1_{1..566}	"transcript_id ""ENST00000517695.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517695.1"" | genecode_v17"	chr8	134783652	134784217	+	ENSG00000253561.1	ENST00000517695.1	CTD-2588J1.1	CTD-2588J1.1-001	NA	NA	NA	inter
LNCA_21_P0007526	0.9272008	A	0.91008633	A	1.01193348925686	0	lncRNA	TCONS_00020342	NA	NA	NA	NA	XLOC_009673	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009673), lincRNA [TCONS_00020342]"	chr12:15049664-15049723	hs|12p12.3	Agilent_HUMAN_G3V2	TCONS_00020342	TCONS_00020342	chr12	 15049664	 15049723	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18218_PI429285431	5.1726074	P	5.0086794	P	1.12033330077642	0	lncRNA	19953-1_{1..725}	lnc-AL592284.1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL592284.1-1:10	chr1	144607095	144607819	+	lnc-AL592284.1-1	lnc-AL592284.1-1:10	ENSG00000225241	NBPF8	NBPF9	NA	chr1:144614959-144617547	inter
CUST_26361_PI429285431	2.1347945	A	1.540391	A	1.50984819119444	0	lncRNA	27868-1_{1..1073}	lnc-LIMS3-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIMS3-2:5	chr2	111020228	111021300	+	lnc-LIMS3-2	lnc-LIMS3-2:5	ENSG00000261760.1	RP11-1223D19.1	LOC100287119	NA	chr2:111025028-111030280	inter
CUST_23892_PI429285431	0.92651045	A	0.91217643	A	1.00998510735268	0	lncRNA	25449-1_{1..528}	lnc-UBE2N-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBE2N-3:2	chr12	 94129341	 94129868	-	lnc-UBE2N-3	lnc-UBE2N-3:2	ENSG00000258274.1	RP11-887P2.5	CRADD	NA	chr12:94119341-94139506	inner
CUST_35358_PI429285431	8.1721115	P	8.451033	P	0.824206930524901	0	lncRNA	36768-1_{1..1060}	n342401|BC073152|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4893|NULL|2.6773800|-0.1449785	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342401|BC073152|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4893|NULL|2.6773800|-0.1449785	chr13	 50234863	 50235922	-	NA	NA	NA	NA	KPNA3	NA	chr13:50273443-50275623	inner
CUST_17750_PI429285431	3.9489691	P	4.0250797	P	0.948611589817001	0	lncRNA	19481-1_{1..553}	lnc-WDR75-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR75-1:1	chr2	190406371	190406923	+	lnc-WDR75-1	lnc-WDR75-1:1	XLOC_001784	linc-ASNSD1	NA	NA	NA	inter
CUST_9196_PI429285431	9.415064	P	9.487633	P	0.950943149674158	0	lncRNA	10708-1_{1..510}	lnc-ABCB4-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABCB4-1:7	chr7	 86974550	 86975059	-	lnc-ABCB4-1	lnc-ABCB4-1:7	ENSG00000182165	XLOC_006516	CROT	NA	chr7:86974951-86984802	inter
CUST_27169_PI429285431	3.1543512	P	3.5258543	P	0.772976736188791	0	lncRNA	28708-1_{1..934}	n324297|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043208|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043208|-0.7539860|-0.3085322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324297|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043208|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043208|-0.7539860|-0.3085322	chr6	169176216	169177149	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2523_PI429285431	0.9252074	A	0.9181222	A	1.00492316555436	0	lncRNA	2511-1_{1..400}	"transcript_id ""ENST00000439844.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439844.2"" | genecode_v17"	chr6	 38681827	 38682226	-	ENSG00000236355.2	ENST00000439844.2	RP3-503A6.2	RP3-503A6.2-001	DNAH8	NA	chr6:38683117-38692993	inter
CUST_19912_PI429285431	6.5752106	P	6.5530357	P	1.01548920262763	0	lncRNA	21567-1_{1..1983}	lnc-TIMM9-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMM9-2:5	chr14	 58764673	 58766655	-	lnc-TIMM9-2	lnc-TIMM9-2:5	ENSG00000257621.2	RP11-349A22.5	ARID4A	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30chr14:58754673-58774847"	NA	inter
CUST_630_PI429285431	0.91313726	A	0.9118103	A	1.00092020170875	0	lncRNA	622-1_{1..833}	"transcript_id ""ENST00000591122.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591122.1"" | genecode_v17"	chr2	   308972	   309804	-	ENSG00000235779.2	ENST00000591122.1	AC079779.5	AC079779.5-028	NA	NA	NA	inter
CUST_35113_PI429285431	1.1566792	A	1.3732561	A	0.860604983721684	0	lncRNA	36519-1_{1..1826}	n342082|AF118086|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4564|NULL|-0.4840310|-0.3756688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342082|AF118086|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4564|NULL|-0.4840310|-0.3756688	chr6	 88273569	 88275394	+	NA	NA	NA	NA	RARS2	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-24.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_RARS2:range=chr6:88224131-882996755'pad=0,hg19_refFlat_RARS2:range=chr6:88224131-882996755'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00chr6:88263569-88285290"	NA	inner
CUST_1050_PI429285431	1.3650668	A	1.454162	A	0.94011216470591	0	lncRNA	1040-1_{1..324}	"transcript_id ""ENST00000444963.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444963.1"" | genecode_v17"	chr2	121444211	121444534	-	ENSG00000229774.1	ENST00000444963.1	AC018866.1	AC018866.1-001	NA	NA	NA	inter
LNCA_21_P0014730	5.82127	P	6.7215395	P	0.535786635279993	0	lncRNA	XR_113037	XR_113037	XR_113037	NA	NA	LOC100505932	uncharacterized LOC100505932	NA	THC2605797	NA	"PREDICTED: Homo sapiens hypothetical LOC100505932 (LOC100505932), miscRNA [XR_113037]"	chr7:86780818-86780759	hs|7q21.12	Agilent_HUMAN_G3V2	XR_113037	XR_113037	chr7	 86780759	 86780818	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13427_PI429285431	0.91571766	A	1.7867903	A	0.546740199564755	0	lncRNA	15066-1_{1..693}	lnc-POLE-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLE-3:2	chr12	133172224	133172916	-	lnc-POLE-3	lnc-POLE-3:2	XLOC_010275	linc-GALNT9-1	LOC100507055	NA	chr12:133179736-133182672	inter
CUST_24103_PI429285431	1.3830698	A	1.3617035	A	1.01492020191888	0	lncRNA	25654-1_{1..235}	lnc-CCDC38-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC38-2:1	chr12	 96358892	 96359126	-	lnc-CCDC38-2	lnc-CCDC38-2:1	ENSG00000257293.1	RP11-410A13.3	AMDHD1	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-61.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.80;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80chr12:96348892-96362370"	NA	inner
CUST_10438_PI429285431	1.0817612	A	2.6024287	A	0.348524625387702	0	lncRNA	11966-1_{1..3000}	lnc-ARRDC3-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARRDC3-1:6	chr5	 90609897	 90612896	-	lnc-ARRDC3-1	lnc-ARRDC3-1:6	XLOC_004924	linc-LYSMD3-2	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.61;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40"	NA	inter
CUST_3536_PI429285431	1.9050516	A	1.8530443	A	1.03670634671404	0	lncRNA	3505-1_{1..477}	"transcript_id ""ENST00000602692.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602692.1"" | genecode_v17"	chr9	125093146	125093622	+	ENSG00000270102.1	ENST00000602692.1	RP11-498E2.8	RP11-498E2.8-001	MRRF	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-24.60chr9:125083146-125085743"	NA	inter
CUST_41501_PI429285431	0.9240029	A	1.0620594	A	0.908742526835531	0	lncRNA	42717-1_{1..76}	ENST00000582178 ncrna:miRNA chromosome:GRCh37:5:86410696:86410771:-1 gene:ENSG00000265919 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582178 ncrna:miRNA chromosome:GRCh37:5:86410696:86410771:-1 gene:ENSG00000265919 gene_biotype:miRNA transcript_biotype:miRNA	chr5	 86410696	 86410771	-	ENSG00000265919	ENST00000582178	NA	NA	NA	NA	NA	inter
CUST_28648_PI429285431	1.0078028	A	0.92188835	A	1.06136026975565	0	lncRNA	30339-1_{1..378}	n326026|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047432|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047432|-0.7952390|-0.4056064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326026|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047432|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047432|-0.7952390|-0.4056064	chr10	 30905633	 30906010	+	NA	NA	NA	NA	LYZL2	NA	chr10:30900708-30918647	inner
CUST_32396_PI429285431	0.91781557	A	0.90247196	A	1.01069213669629	0	lncRNA	34072-1_{1..834}	n338986|BC021739|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1414|NULL|-1.0821600|-0.2846745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n338986|BC021739|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1414|NULL|-1.0821600|-0.2846745	chr2	159023161	159023994	+	NA	NA	NA	NA	CCDC148	"hg19_refFlat_CCDC148:range=chr2:159028625-1593129515'pad=0,hg19_refFlat_CCDC148:range=chr2:159028625-1593129515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80chr2:159027869-159102681"	NA	inner
CUST_21163_PI429285431	4.102911	P	3.9408245	P	1.11890418542144	0	lncRNA	22786-1_{1..563}	lnc-SLC38A8-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC38A8-6:1	chr16	 83431531	 83432093	-	lnc-SLC38A8-6	lnc-SLC38A8-6:1	ENSG00000261410.1	RP11-543N12.1	CDH13	NA	chr16:83421531-83441775	inner
CUST_11816_PI429285431	0.9007607	A	0.8980426	A	1.00188581927629	0	lncRNA	13398-1_{1..394}	lnc-MEF2C-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MEF2C-3:1	chr5	 88259767	 88260160	-	lnc-MEF2C-3	lnc-MEF2C-3:1	XLOC_004919	linc-MEF2C-3	NA	NA	NA	inter
CUST_42570_PI429285431	0.9005011	A	0.896403	A	1.00284462474917	0	lncRNA	45403-1_{1..68}	ENST00000516837 ncrna:snoRNA chromosome:GRCh37:1:54991059:54991126:1 gene:ENSG00000252646 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516837 ncrna:snoRNA chromosome:GRCh37:1:54991059:54991126:1 gene:ENSG00000252646 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 54991059	 54991126	+	ENSG00000252646	ENST00000516837	NA	NA	ACOT11	NA	chr1:54990059-55001126	inter
CUST_45235_PI429285431	4.7791805	P	4.9792767	P	0.870492516259348	0	lncRNA	49691-1_{1..869}	"gi|390125180|ref|NR_051989.1| Homo sapiens long intergenic non-protein coding RNA 534 (LINC00534), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|390125180|ref|NR_051989.1| Homo sapiens long intergenic non-protein coding RNA 534 (LINC00534), non-coding RNA"	Chr8	 91233716	 91234584	+	100874052	NR_051989.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80"	NA	inter
CUST_307_PI429201921	4.5284805	P	4.5375147	P	0.993757535391331	0	lncRNA	209-3_{6001..7251}	TC13001368.hg.1	 TCONS_l2_00007500-XLOC_l2_003911 // Broad TUCP // linc-FAM123A chr13:-:25749015-25754139 // chr13 // 100 // 100 // 0 // --- // 0///TCONS_l2_00007499-XLOC_l2_003911 // Broad TUCP // linc-FAM123A chr13:-:25746965-25754217 // chr13 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00007088-XLOC_l2_003911 // Broad TUCP // linc-FAM123A chr13:-:25747054-25748221 // chr13 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr13:-:25746965-25754217	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00007499-XLOC_l2_003911	linc-FAM123A	chr13	 25746965	 25754217	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27670_PI429285431	0.90953386	A	0.91160476	A	0.998565591252844	0	lncRNA	29248-1_{1..612}	n324877|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170920|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170920|-0.4187660|-0.2309147	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324877|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170920|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170920|-0.4187660|-0.2309147	chr21	 22017483	 22018094	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39668_PI429285431	0.91174614	A	1.5344194	A	0.649466375146338	0	lncRNA	40608-1_{1..1814}	n405297|NR_001434_6|lncRNA|Homosapiens||RefGeneNoncode|NR_001434_6||-1.1690900|-0.2921398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n405297|NR_001434_6|lncRNA|Homosapiens||RefGeneNoncode|NR_001434_6||-1.1690900|-0.2921398	chr6	  1186739	  1188552	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47498_PI429285431	2.4483807	A	2.9425633	A	0.709963814405387	0	lncRNA	51512-3_{6001..7605}	"gi|375065861|ref|NR_046312.1| Homo sapiens KIAA1656 protein (KIAA1656), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|375065861|ref|NR_046312.1| Homo sapiens KIAA1656 protein (KIAA1656), non-coding RNA"	Chr22	 30770800	 30772404	-	85371	NR_046312.1	NA	NA	NA	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CCDC157:range=chr22:30761990-307727345'pad=0,hg19_refFlat_CCDC157:range=chr22:30761990-307727345'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_7508_PI429285431	3.250063	A	0.89999676	A	5.09847659571051	0	lncRNA	9149-1_{1..915}	lnc-NBN-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NBN-1:5	chr8	 90736857	 90737771	-	lnc-NBN-1	lnc-NBN-1:5	ENSG00000251136	RP11-37B2.1	NA	NA	NA	inter
CUST_23701_PI429285431	0.9149561	A	0.9091924	A	1.00400308342433	0	lncRNA	25266-1_{1..402}	lnc-FURIN-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-FURIN-1:2	chr15	 91384384	 91384785	+	lnc-FURIN-1	lnc-FURIN-1:2	ENSG00000259704.1	CTD-3094K11.1	NA	NA	NA	inter
CUST_20758_PI429285431	0.9045967	A	0.9007145	A	1.00269455980236	0	lncRNA	22391-1_{1..526}	lnc-RNF111-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RNF111-1:1	chr15	 59109857	 59110382	+	lnc-RNF111-1	lnc-RNF111-1:1	ENSG00000259402.1	RP11-30K9.4	FAM63B	"hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00chr15:59099857-59119927"	NA	inner
CUST_18618_PI429285431	0.90213466	A	0.89970225	A	1.00168744026117	0	lncRNA	20324-1_{1..481}	lnc-MRPL39-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPL39-4:4	chr21	 26838912	 26839392	-	lnc-MRPL39-4	lnc-MRPL39-4:4	ENSG00000243740	AP000221.2	NA	NA	NA	inter
CUST_42832_PI429285431	7.794414	P	7.6394787	P	1.11337168614925	0	lncRNA	45864-1_{1..122}	ENST00000391286 ncrna:snoRNA chromosome:GRCh37:4:53579416:53579537:1 gene:ENSG00000212588 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391286 ncrna:snoRNA chromosome:GRCh37:4:53579416:53579537:1 gene:ENSG00000212588 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	 53579416	 53579537	+	ENSG00000212588	ENST00000391286	NA	NA	NA	NA	NA	inter
CUST_40804_PI429285431	5.5715165	P	4.6458845	P	1.89951617885219	0	lncRNA	41510-3_{6001..7788}	n410565|NR_037804|lncRNA|Homosapiens||RefGeneNoncode|NR_037804||14.2283000|-0.2590850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410565|NR_037804|lncRNA|Homosapiens||RefGeneNoncode|NR_037804||14.2283000|-0.2590850	chr3	132282981	132284768	-	NA	NA	NA	NA	UBA5	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70chr3:132365965-132396944"	NA	inter
CUST_20953_PI429285431	3.36134	P	3.362358	P	0.999294625064139	0	lncRNA	22584-1_{1..1099}	lnc-AF131216.5.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AF131216.5.1-1:1	chr8	 11204806	 11205904	-	lnc-AF131216.5.1-1	lnc-AF131216.5.1-1:1	ENSG00000255020.1	AF131216.5	NA	NA	NA	inter
CUST_2385_PI429285431	2.083627	A	1.3725706	A	1.637002358084	0	lncRNA	2378-1_{1..560}	"transcript_id ""ENST00000340585.6"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000340585.6"" | genecode_v17"	chr5	142869420	142869979	-	ENSG00000249429.1	ENST00000340585.6	CTD-2050E21.1	CTD-2050E21.1-001	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10"	NA	inter
CUST_34256_PI429285431	1.0746106	A	0.90964097	A	1.1211424767445	0	lncRNA	35758-2_{3001..5512}	n341114|CR627226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3580|NULL|18.3601000|-0.3329892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341114|CR627226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3580|NULL|18.3601000|-0.3329892	chr11	108383805	108386316	-	NA	NA	NA	NA	EXPH5	NA	chr11:108376158-108432932	inner
CUST_5132_PI429285431	0.9170901	A	0.911121	A	1.00414603595994	0	lncRNA	5072-1_{1..543}	"transcript_id ""ENST00000564670.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564670.1"" | genecode_v17"	chr15	 32828248	 32828790	+	ENSG00000261064.1	ENST00000564670.1	RP11-1000B6.3	RP11-1000B6.3-003	LOC643699	NA	chr15:32885755-32889814	inter
CUST_4303_PI429285431	1.5698341	A	1.9062861	A	0.791986640636047	0	lncRNA	4258-1_{1..508}	"transcript_id ""ENST00000538008.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000538008.1"" | genecode_v17"	chr12	 67471406	 67471913	-	ENSG00000257083.1	ENST00000538008.1	RP11-123O10.3	RP11-123O10.3-002	NA	NA	NA	inter
CUST_8287_PI429285431	0.92677987	A	0.9185678	A	1.00570840436706	0	lncRNA	9872-1_{1..716}	lnc-CYB5R2-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYB5R2-3:7	chr11	  7461358	  7462073	-	lnc-CYB5R2-3	lnc-CYB5R2-3:7	ENSG00000251364	ENSG00000251364.2	SYT9	NA	chr11:7451358-7471923	inner
CUST_43780_PI429285431	0.90805644	A	0.904827	A	1.00224098449141	0	lncRNA	48512-1_{1..3000}	"gi|213417729|ref|NR_024468.1| Homo sapiens uncharacterized LOC730811 (LOC730811), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|213417729|ref|NR_024468.1| Homo sapiens uncharacterized LOC730811 (LOC730811), non-coding RNA"	Chr2	  2323004	  2326003	+	730811	NR_024468.1	NA	NA	NA	NA	NA	inter
CUST_41040_PI429285431	0.8977403	A	0.9061059	A	0.994218187333271	0	lncRNA	41699-1_{1..615}	n411706|NR_044996_2|lncRNA|Homosapiens||RefGeneNoncode|NR_044996_2||-1.3497400|-0.2193388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411706|NR_044996_2|lncRNA|Homosapiens||RefGeneNoncode|NR_044996_2||-1.3497400|-0.2193388	chr6	  3619145	  3619759	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2613_PI429285431	4.641921	P	5.209265	P	0.67485805844495	0	lncRNA	2600-1_{1..375}	"transcript_id ""ENST00000456424.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456424.1"" | genecode_v17"	chr6	114113032	114113406	+	ENSG00000231912.1	ENST00000456424.1	RP1-249H1.2	RP1-249H1.2-001	LOC100652953	NA	chr6:114103032-114160807	inter
CUST_16964_PI429285431	0.90973467	A	0.9081871	A	1.00107326932397	0	lncRNA	18676-1_{1..456}	lnc-DCUN1D1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCUN1D1-6:1	chr3	181894771	181895226	-	lnc-DCUN1D1-6	lnc-DCUN1D1-6:1	XLOC_003347	linc-DNAJC19-5	NA	NA	NA	inter
CUST_19659_PI429285431	5.185059	P	5.975642	P	0.578110427541046	0	lncRNA	21315-1_{1..464}	lnc-LENG9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LENG9-1:1	chr19	 54959811	 54960274	-	lnc-LENG9-1	lnc-LENG9-1:1	ENSG00000226696.1	LENG8-AS1	LENG8	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60chr19:54960065-54970223"	NA	inner
CUST_9953_PI429285431	0.9235093	A	0.9238767	A	0.999745370149547	0	lncRNA	11477-1_{1..463}	lnc-AL591845.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL591845.1-2:2	chr1	 37241081	 37241543	+	lnc-AL591845.1-2	lnc-AL591845.1-2:2	XLOC_000144	linc-ZC3H12A-1	NA	NA	NA	inter
LNCA_21_P0009750	1.004552	A	0.9573084	A	1.03328884445146	0	lncRNA	TCONS_00027712	NA	NA	NA	NA	XLOC_013275	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013275), lincRNA [TCONS_00027712]"	chr19:23493411-23493352	hs|19p12	Agilent_HUMAN_G3V2	TCONS_00027712	TCONS_00027712	chr19	 23493352	 23493411	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43457_PI429285431	8.528002	P	8.601823	P	0.950118259912993	0	lncRNA	48261-1_{1..2586}	"gi|373938433|ref|NR_024174.2| Homo sapiens MAP kinase interacting serine/threonine kinase 1 (MKNK1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|373938433|ref|NR_024174.2| Homo sapiens MAP kinase interacting serine/threonine kinase 1 (MKNK1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_024174.2	NA	NA	NA	NA	NA	Unknown
CUST_14695_PI429285431	3.1021388	A	3.2836711	A	0.881765966821022	0	lncRNA	16360-5_{12001..15000}	lnc-NAP1L2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-NAP1L2-1:6	chrX	 73073217	 73076216	-	lnc-NAP1L2-1	lnc-NAP1L2-1:6	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90"	NA	inter
CUST_33265_PI429285431	2.1989515	A	2.129109	A	1.04960209159308	0	lncRNA	34851-1_{1..1093}	n339973|BC053535|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2426|NULL|-0.8991350|-0.2119782	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339973|BC053535|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2426|NULL|-0.8991350|-0.2119782	chr10	 14116286	 14117378	+	NA	NA	NA	NA	FRMD4A	NA	chr10:14106286-14139880	inner
CUST_6189_PI429285431	1.2451862	A	0.9187143	A	1.25394311333747	0	lncRNA	6112-2_{3001..3067}	"transcript_id ""ENST00000589125.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589125.1"" | genecode_v17"	chr18	 52776135	 52776201	-	ENSG00000267013.1	ENST00000589125.1	CTD-2171N6.1	CTD-2171N6.1-001	NA	NA	NA	inter
CUST_5983_PI429285431	1.643167	A	1.0192367	A	1.54106776230011	0	lncRNA	5911-1_{1..394}	"transcript_id ""ENST00000586779.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586779.1"" | genecode_v17"	chr17	 75523080	 75523473	+	ENSG00000267665.1	ENST00000586779.1	RP11-13K12.2	RP11-13K12.2-002	NA	NA	NA	inter
CUST_28351_PI429285431	0.9202293	A	0.9125642	A	1.00532718169347	0	lncRNA	30000-1_{1..685}	n325660|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045431|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045431|-1.4275200|-0.4575327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325660|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045431|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045431|-1.4275200|-0.4575327	chr13	 88998945	 88999629	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25181_PI429285431	1.1131365	A	1.2201618	A	0.928500569398895	0	lncRNA	26712-1_{1..570}	lnc-G3BP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-G3BP1-1:1	chr5	151146602	151147171	+	lnc-G3BP1-1	lnc-G3BP1-1:1	ENSG00000253921.1	CTB-113P19.3	ATOX1	NA	chr5:151136602-151138210	inter
CUST_22639_PI429285431	1.6200845	A	1.4544458	A	1.12166254283089	0	lncRNA	24225-1_{1..965}	lnc-KCNJ12-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNJ12-4:1	chr17	 21445248	 21446212	+	lnc-KCNJ12-4	lnc-KCNJ12-4:1	ENSG00000266466.1	RP11-822E23.2	C17orf51	NA	chr17:21435248-21454941	inner
CUST_40216_PI429285431	10.607249	P	10.138077	P	1.38431474603821	0	lncRNA	41041-1_{1..1669}	n408043|NR_027823|lncRNA|Homosapiens||RefGeneNoncode|NR_027823||3.3770900|-0.1138954	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408043|NR_027823|lncRNA|Homosapiens||RefGeneNoncode|NR_027823||3.3770900|-0.1138954	chr2	128395995	128397663	-	NA	NA	NA	NA	MYO7B	NA	chr2:128385995-128395303	inner
CUST_17547_PI429285431	0.9287868	A	0.92738974	A	1.00096883721994	0	lncRNA	19273-1_{1..270}	lnc-TMEM232-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM232-2:1	chr5	110405430	110405699	-	lnc-TMEM232-2	lnc-TMEM232-2:1	XLOC_004954	linc-TMEM232	TSLP	NA	chr5:110407390-110413722	inter
CUST_5044_PI429285431	3.5069644	P	5.3015447	P	0.288255432007002	0	lncRNA	4985-1_{1..1068}	"transcript_id ""ENST00000554441.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554441.1"" | genecode_v17"	chr14	102023641	102024708	-	ENSG00000258498.1	ENST00000554441.1	DIO3OS	DIO3OS-009	DIO3	NA	chr14:102027688-102029789	inter
CUST_15255_PI429285431	0.9209783	A	0.9161721	A	1.00333695927271	0	lncRNA	16927-1_{1..436}	lnc-ABCA1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABCA1-3:1	chr9	108827105	108827540	-	lnc-ABCA1-3	lnc-ABCA1-3:1	XLOC_007817	linc-ABCA1-4	NA	NA	NA	inter
CUST_23891_PI429285431	0.92082757	A	0.917739	A	1.00214312680786	0	lncRNA	25448-1_{1..373}	lnc-ASAH2B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASAH2B-3:1	chr10	 52233709	 52234081	+	lnc-ASAH2B-3	lnc-ASAH2B-3:1	ENSG00000225303.1	RP11-512N4.2	SGMS1	NA	chr10:52223709-52244006	inner
CUST_6727_PI429285431	1.6056051	A	1.8587699	A	0.839053785968226	0	lncRNA	6675-1_{1..2290}	"transcript_id ""ENST00000433766.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433766.1"" | genecode_v17"	chr20	 54036874	 54039163	-	ENSG00000224008.1	ENST00000433766.1	RP5-1010E17.2	RP5-1010E17.2-001	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00"	NA	inter
CUST_39949_PI429285431	5.385458	P	4.5800266	P	1.74766830793994	0	lncRNA	40823-1_{1..1076}	n406947|NR_024442|lncRNA|Homosapiens||RefGeneNoncode|NR_024442||4.9714900|-0.2440020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406947|NR_024442|lncRNA|Homosapiens||RefGeneNoncode|NR_024442||4.9714900|-0.2440020	chr1	146490894	146491969	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005074	1.0364193	A	0.98851734	A	1.03376048347889	0	lncRNA	TCONS_00012340	NA	NA	NA	NA	XLOC_005890	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005890), lincRNA [TCONS_00012340]"	chr6:156695031-156694972	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_00012340	TCONS_00012340	chr6	156694972	156695031	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19249_PI429285431	0.9247545	A	0.91571194	A	1.00628750888759	0	lncRNA	20918-1_{1..551}	lnc-ZDHHC6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZDHHC6-1:1	chr10	114179634	114180184	-	lnc-ZDHHC6-1	lnc-ZDHHC6-1:1	ENSG00000233346.1	RP11-324O2.4	ACSL5	NA	chr10:114169634-114188138	inner
CUST_14405_PI429285431	6.9275565	P	7.2893453	P	0.778199090871119	0	lncRNA	16066-1_{1..828}	lnc-TAOK3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TAOK3-1:1	chr12	118573662	118574489	-	lnc-TAOK3-1	lnc-TAOK3-1:1	XLOC_010212	linc-VSIG10	PEBP1	NA	chr12:118573870-118583390	inter
CUST_12469_PI429285431	0.92901623	A	0.9174167	A	1.00807259057473	0	lncRNA	14081-1_{1..409}	lnc-CNTN1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CNTN1-1:3	chr12	 40922059	 40922467	+	lnc-CNTN1-1	lnc-CNTN1-1:3	XLOC_009713	linc-CNTN1	NA	NA	NA	inter
CUST_43270_PI429285431	5.5848875	P	5.559502	P	1.01775160738591	0	lncRNA	48088-1_{1..238}	ENST00000602711 havana:sense_intronic chromosome:GRCh37:8:11703663:11703900:-1 gene:ENSG00000269899 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602711 havana:sense_intronic chromosome:GRCh37:8:11703663:11703900:-1 gene:ENSG00000269899 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr8	 11703663	 11703900	-	ENSG00000269899	ENST00000602711	NA	NA	FDFT1	NA	chr8:11693663-11696818	inner
CUST_14649_PI429285431	0.90717924	A	0.9043752	A	1.0019455024591	0	lncRNA	16319-1_{1..3000}	lnc-USP25-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP25-1:1	chr21	 17266619	 17269618	+	lnc-USP25-1	lnc-USP25-1:1	XLOC_013866	linc-CXADR-5	NA	NA	NA	inter
CUST_5802_PI429285431	2.002915	A	2.3140597	A	0.806001986731466	0	lncRNA	5726-1_{1..789}	"transcript_id ""ENST00000581019.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581019.1"" | genecode_v17"	chr17	 29056487	 29057275	+	ENSG00000263603.1	ENST00000581019.1	CTD-2349P21.5	CTD-2349P21.5-001	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00"	NA	inter
CUST_6449_PI429285431	0.9102416	A	0.9070723	A	1.00219920607337	0	lncRNA	6390-1_{1..536}	"transcript_id ""ENST00000592270.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592270.1"" | genecode_v17"	chr19	 32377610	 32378145	-	ENSG00000267012.1	ENST00000592270.1	CTC-360P9.1	CTC-360P9.1-001	NA	NA	NA	inter
CUST_9021_PI429285431	6.6752543	P	6.1794705	P	1.41008663129481	0	lncRNA	10548-1_{1..645}	lnc-FAM172A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM172A-2:1	chr5	 92921035	 92921679	-	lnc-FAM172A-2	lnc-FAM172A-2:1	ENSG00000237187	RP11-65F13.2	NR2F1	"hg19_refFlat_NR2F2:range=chr15:96875335-968808515'pad=0,hg19_refFlat_NR2F2:range=chr15:96875335-968808515'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NR2F1:range=chr5:92920730-929295485'pad=0,hg19_refFlat_NR2F1:range=chr5:92920730-929295485'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90chr5:92919043-92929788"	NA	inner
CUST_40456_PI429285431	3.2455957	P	4.153359	P	0.533010810844969	0	lncRNA	41229-1_{1..1800}	n409368|NR_033742|lncRNA|Homosapiens||RefGeneNoncode|NR_033742||8.7131400|-0.0594025	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409368|NR_033742|lncRNA|Homosapiens||RefGeneNoncode|NR_033742||8.7131400|-0.0594025	chrX	 64770501	 64772300	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70"	NA	inter
CUST_33512_PI429285431	1.4637148	A	0.91337514	A	1.46443043262089	0	lncRNA	35083-1_{1..2703}	n340251|AK093177|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2712|NULL|-1.2269600|-0.3044572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340251|AK093177|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2712|NULL|-1.2269600|-0.3044572	chr4	147111637	147114339	+	NA	NA	NA	NA	LSM6	NA	chr4:147101637-147111213	inter
CUST_40309_PI429285431	1.1389248	A	1.466845	A	0.796684162173449	0	lncRNA	41112-1_{1..1764}	n408341|NR_029410|lncRNA|Homosapiens||RefGeneNoncode|NR_029410||1.5373300|-0.2835635	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408341|NR_029410|lncRNA|Homosapiens||RefGeneNoncode|NR_029410||1.5373300|-0.2835635	chr9	 88420916	 88422679	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45852_PI429285431	10.573322	P	10.662875	P	0.939813893027691	0	lncRNA	50182-1_{1..2723}	"gi|203097777|ref|NR_024148.1| Homo sapiens ring finger protein 121 (RNF121), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|203097777|ref|NR_024148.1| Homo sapiens ring finger protein 121 (RNF121), transcript variant 3, non-coding RNA"	Chr11	 71639768	 71642490	+	55298	NR_024148.1	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50"	NA	inter
CUST_41173_PI429285431	8.006711	P	8.163825	P	0.896817291455108	0	lncRNA	42005-1_{1..79}	ENST00000581132 ncrna:miRNA chromosome:GRCh37:9:6007826:6007904:1 gene:ENSG00000263575 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581132 ncrna:miRNA chromosome:GRCh37:9:6007826:6007904:1 gene:ENSG00000263575 gene_biotype:miRNA transcript_biotype:miRNA	chr9	  6007826	  6007904	+	ENSG00000263575	ENST00000581132	NA	NA	RANBP6	NA	chr9:6011019-6015640	inner
CUST_759_PI429285431	3.0007563	A	3.0094304	A	0.994005610516302	0	lncRNA	750-1_{1..623}	"transcript_id ""ENST00000451644.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451644.1"" | genecode_v17"	chr2	 12147242	 12147864	+	ENSG00000224184.1	ENST00000451644.1	AC096559.1	AC096559.1-003	NA	NA	NA	inter
CUST_34706_PI429285431	0.9218131	A	1.0741539	A	0.899789352343422	0	lncRNA	36155-1_{1..2021}	n341612|AK022619|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4083|NULL|-1.0718000|-0.2738725	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341612|AK022619|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4083|NULL|-1.0718000|-0.2738725	chr8	133073732	133075752	-	NA	NA	NA	NA	OC90	NA	chr8:133063732-133071627	inner
CUST_17671_PI429285431	0.9247252	A	0.9155549	A	1.00637661216562	0	lncRNA	19399-1_{1..942}	lnc-THADA-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THADA-4:3	chr2	 43228463	 43229404	-	lnc-THADA-4	lnc-THADA-4:3	XLOC_002067	linc-HAAO-4	NA	NA	NA	inter
CUST_44375_PI429285431	5.083049	P	5.5340347	P	0.731542861372494	0	lncRNA	48995-1_{1..943}	"gi|326368234|ref|NR_037969.1| Homo sapiens SRD5A3 antisense RNA 1 (SRD5A3-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|326368234|ref|NR_037969.1| Homo sapiens SRD5A3 antisense RNA 1 (SRD5A3-AS1), non-coding RNA"	Chr4	 56232768	 56233710	-	100506462	NR_037969.1	NA	NA	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-32.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70"	NA	inter
CUST_14517_PI429285431	0.90786237	A	0.91686374	A	0.993780149616912	0	lncRNA	16183-1_{1..686}	lnc-C14orf23-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf23-2:3	chr14	 29566367	 29567052	+	lnc-C14orf23-2	lnc-C14orf23-2:3	XLOC_010782	linc-G2E3-4	NA	NA	NA	inter
CUST_13818_PI429285431	0.923836	A	1.1165389	A	0.874964931406088	0	lncRNA	15461-1_{1..313}	lnc-IGFBP7-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGFBP7-5:1	chr4	 59853822	 59854134	-	lnc-IGFBP7-5	lnc-IGFBP7-5:1	XLOC_003962	linc-IGFBP7-7	NA	NA	NA	inter
LNCA_33_P3304883	5.2208977	P	5.67186	P	0.731554726833522	0	lncRNA	XR_108721	XR_108721	XR_108721	100131372	Hs.704272	LOC100131372	uncharacterized LOC100131372	NA	THC2632533	NA	"PREDICTED: Homo sapiens hypothetical LOC100131372 (LOC100131372), miscRNA [XR_108721]"	chr7:469712-469653	hs|7p22.3	Agilent_HUMAN_G3V2	XR_108721	XR_108721	chr7	   469653	   469712	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12244_PI429285431	7.2669926	P	7.094904	P	1.12668841950851	0	lncRNA	13848-1_{1..499}	lnc-RP11-204N11.1.1-3:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-204N11.1.1-3:14	chr14	 98444314	 98444812	-	lnc-RP11-204N11.1.1-3	lnc-RP11-204N11.1.1-3:14	XLOC_011117	linc-ATG2B-2	NA	NA	NA	inter
CUST_31098_PI429285431	4.509164	P	4.8714285	P	0.777942537495344	0	lncRNA	32889-1_{1..301}	n337377|DQ655950|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393063|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393063|-0.9392160|-0.1127054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337377|DQ655950|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393063|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393063|-0.9392160|-0.1127054	chr9	131870153	131870453	+	NA	NA	NA	NA	CRAT	"hg19_refFlat_CRAT:range=chr9:131857676-1318727885'pad=0,hg19_refFlat_CRAT:range=chr9:131857676-1318727885'pad=0 3'pad=0 strand=- repeatMasking=none,-100.90;hg19_refFlat_CRAT:range=chr9:131857676-1318703205'pad=0,hg19_refFlat_CRAT:range=chr9:131857676-1318703205'pad=0 3'pad=0 strand=- repeatMasking=none,-100.90chr9:131860153-131873070"	NA	inner
CUST_35727_PI429285431	4.2475305	P	4.445514	P	0.871768209830713	0	lncRNA	37144-1_{1..3000}	n342894|D38163|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5402|NULL|7.2713800|-0.0955758	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342894|D38163|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5402|NULL|7.2713800|-0.0955758	chr6	 70576447	 70579446	+	NA	NA	NA	NA	COL19A1	NA	chr6:70576448-70922157	inner
CUST_48912_PI429285431	0.93054056	A	0.91632485	A	1.0099022856646	0	lncRNA	52754-1_{1..235}	hg19_lincRNAsTranscripts_TCONS_l2_00019874 range=chr3:126036819-126041139 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019874 range=chr3:126036819-126041139 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	126036819	126037053	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21993_PI429285431	7.150586	P	6.837659	P	1.24222542390549	0	lncRNA	23601-1_{1..515}	lnc-HSFY2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-HSFY2-3:1	chrY	 21238931	 21239445	-	lnc-HSFY2-3	lnc-HSFY2-3:1	ENSG00000176728.3	TTTY14	NA	NA	NA	inter
CUST_24690_PI429285431	5.11291	P	5.5163	P	0.756079581985607	0	lncRNA	26237-1_{1..684}	lnc-FDXACB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FDXACB1-1:1	chr11	111699579	111700262	-	lnc-FDXACB1-1	lnc-FDXACB1-1:1	ENSG00000254450.1	ALG9-IT1	ALG9	NA	chr11:111689579-111709936	inner
CUST_41727_PI429285431	4.43657	P	4.9351506	P	0.707802812731222	0	lncRNA	43253-1_{1..91}	ENST00000362142 ncrna:miRNA chromosome:GRCh37:14:101531784:101531874:1 gene:ENSG00000199012 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362142 ncrna:miRNA chromosome:GRCh37:14:101531784:101531874:1 gene:ENSG00000199012 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101531784	101531874	+	ENSG00000199012	ENST00000362142	NA	NA	NA	NA	NA	inter
CUST_13710_PI429285431	0.91733754	A	0.9162543	A	1.00075112670635	0	lncRNA	15348-1_{1..1100}	lnc-PARP11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PARP11-2:1	chr12	  4029895	  4030994	-	lnc-PARP11-2	lnc-PARP11-2:1	XLOC_009983	linc-PARP11-1	NA	NA	NA	inter
CUST_47253_PI429285431	0.9289481	A	0.93098515	A	0.998589020904192	0	lncRNA	51325-1_{1..555}	"gi|404247486|ref|NR_073153.1| Homo sapiens defensin, beta 119 (DEFB119), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|404247486|ref|NR_073153.1| Homo sapiens defensin, beta 119 (DEFB119), transcript variant 2, non-coding RNA"	Chr20	 29964966	 29965520	-	245932	NR_073153.1	NA	NA	NA	NA	NA	inter
CUST_51531_PI429285431	0.960154	A	0.94481874	A	1.01068628705053	0	lncRNA	55098-7_{18001..21000}	hg19_lincRNAsTranscripts_TCONS_l2_00011139 range=chr17:20432533-20460098 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011139 range=chr17:20432533-20460098 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 20450533	 20453532	-	NA	NA	NA	NA	CDRT15L2	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70chr17:20422533-20470098"	NA	inter
CUST_35172_PI429285431	1.8068684	A	0.9135917	A	1.85738990636812	0	lncRNA	36574-1_{1..2202}	n342151|BC034912|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4638|NULL|-1.2201200|-0.2937989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n342151|BC034912|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4638|NULL|-1.2201200|-0.2937989	chr6	146915651	146917852	-	NA	NA	NA	NA	C6orf103	NA	chr6:146920136-146930067	inter
CUST_45201_PI429285431	0.9122657	A	0.9042024	A	1.00560470156016	0	lncRNA	49666-2_{3001..6000}	"gi|225543100|ref|NR_027378.1| Homo sapiens uncharacterized LOC643763 (UG0898H09), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225543100|ref|NR_027378.1| Homo sapiens uncharacterized LOC643763 (UG0898H09), non-coding RNA"	Chr8	 63893420	 63896419	+	643763	NR_027378.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004711	5.9367385	P	6.26141	P	0.798480178676399	0	lncRNA	ENST00000436492	NA	NA	NA	NA	XLOC_005548	NA	ENST00000436492	NA	NA	"BROAD Institute lincRNA (XLOC_005548), lincRNA [TCONS_00011419]"	chr6:169123534-169123593	hs|6q27	Agilent_HUMAN_G3V2	ENST00000436492	ENST00000436492	chr6	169123534	169123593	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36993_PI429285431	0.91547763	A	0.9033602	A	1.00843453436715	0	lncRNA	38137-2_{3001..6000}	n345453|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1002|NULL|-1.3257800|-0.3458925	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n345453|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1002|NULL|-1.3257800|-0.3458925	chr1	 98443837	 98446836	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26748_PI429285431	1.0529705	A	1.0646893	A	0.991910048048127	0	lncRNA	28242-1_{1..520}	n323793|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060865|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060865|-0.2227340|-0.2728836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323793|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060865|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060865|-0.2227340|-0.2728836	chrX	149834943	149835462	+	NA	NA	NA	NA	MTM1	NA	chrX:149824943-149841616	inner
CUST_41907_PI429285431	2.4160712	A	2.400415	A	1.01091114797392	0	lncRNA	43636-1_{1..81}	ENST00000578924 ncrna:miRNA chromosome:GRCh37:7:73125647:73125727:1 gene:ENSG00000265724 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578924 ncrna:miRNA chromosome:GRCh37:7:73125647:73125727:1 gene:ENSG00000265724 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 73125647	 73125727	+	ENSG00000265724	ENST00000578924	NA	NA	STX1A	NA	chr7:73115647-73134017	inner
CUST_16525_PI429285431	1.2239022	A	1.1808152	A	1.03031608372662	0	lncRNA	18224-1_{1..352}	lnc-EFHA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFHA2-2:1	chr8	 16424885	 16425236	+	lnc-EFHA2-2	lnc-EFHA2-2:1	XLOC_006724	linc-EFHA2	NA	NA	NA	inter
CUST_37911_PI429285431	5.840465	P	6.246778	P	0.754549263214523	0	lncRNA	39000-1_{1..2872}	n346451|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2001|NULL|-1.3018000|-0.2636240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346451|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2001|NULL|-1.3018000|-0.2636240	chr1	114574960	114577831	+	NA	NA	NA	NA	SYT6	NA	chr1:114564960-114588381	inter
CUST_6538_PI429285431	0.9225687	A	1.0060093	A	0.94380413673696	0	lncRNA	6481-1_{1..544}	"transcript_id ""ENST00000595955.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595955.1"" | genecode_v17"	chr19	 46530912	 46531455	+	ENSG00000268401.1	ENST00000595955.1	CTC-344H19.4	CTC-344H19.4-001	CCDC61	NA	chr19:46520912-46521874	inter
CUST_36787_PI429285431	2.3057177	A	2.6237888	A	0.802141633621098	0	lncRNA	37959-1_{1..803}	n345266|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_815|NULL|-1.4214600|-0.4141951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345266|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_815|NULL|-1.4214600|-0.4141951	chr14	 66261739	 66262541	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14727_PI429285431	0.91712916	A	0.9137089	A	1.00237355601041	0	lncRNA	16391-1_{1..3000}	lnc-ZNF131-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF131-4:1	chr5	 42960426	 42963425	+	lnc-ZNF131-4	lnc-ZNF131-4:1	XLOC_004362	linc-ZNF131-5	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-56.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_13719_PI429285431	2.167315	A	2.055844	A	1.08032919984859	0	lncRNA	15358-1_{1..1323}	lnc-RP1-241P17.4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP1-241P17.4.1-1:1	chrX	114930702	114932024	-	lnc-RP1-241P17.4.1-1	lnc-RP1-241P17.4.1-1:1	XLOC_008212	linc-LRCH2-2	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30"	NA	inter
CUST_50066_PI429285431	1.0935544	A	0.89689666	A	1.14604027083096	0	lncRNA	53799-1_{1..537}	hg19_lincRNAsTranscripts_TCONS_l2_00027790 range=chr8:58256385-58259950 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027790 range=chr8:58256385-58259950 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 58256385	 58256921	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14437_PI429285431	0.91221786	A	1.1433923	A	0.851941078441107	0	lncRNA	16098-1_{1..330}	lnc-ZNF333-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF333-2:1	chr19	 14902211	 14902540	+	lnc-ZNF333-2	lnc-ZNF333-2:1	XLOC_012979	linc-OR7C2-2	OR7C1	NA	chr19:14909986-14910948	inter
CUST_48547_PI429285431	5.354114	P	5.2281427	P	1.0912421684049	0	lncRNA	52396-1_{1..720}	hg19_lincRNAsTranscripts_TCONS_l2_00014795 range=chr2:111982696-112123535 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014795 range=chr2:111982696-112123535 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	111982696	111983415	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41471_PI429285431	4.0804906	P	4.353895	P	0.827364865984501	0	lncRNA	42663-1_{1..73}	ENST00000582236 ncrna:miRNA chromosome:GRCh37:20:50069442:50069514:-1 gene:ENSG00000266761 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582236 ncrna:miRNA chromosome:GRCh37:20:50069442:50069514:-1 gene:ENSG00000266761 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 50069442	 50069514	-	ENSG00000266761	ENST00000582236	NA	NA	NFATC2	NA	chr20:50059442-50079514	inter
CUST_40095_PI429285431	0.90259653	A	1.108241	A	0.867151233267935	0	lncRNA	40940-1_{1..2206}	n407462|NR_026919|lncRNA|Homosapiens||RefGeneNoncode|NR_026919||5.5906800|-0.1207568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407462|NR_026919|lncRNA|Homosapiens||RefGeneNoncode|NR_026919||5.5906800|-0.1207568	chr22	 20193854	 20196059	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31917_PI429285431	8.120383	P	8.540848	P	0.747183758135731	0	lncRNA	33646-1_{1..1139}	n338472|BC038465|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|869|NULL|-1.0396300|-0.2581046	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338472|BC038465|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|869|NULL|-1.0396300|-0.2581046	chr14	 97925206	 97926344	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44941_PI429285431	0.93235844	A	0.93242633	A	0.999952943345111	0	lncRNA	49453-1_{1..634}	"gi|397139187|ref|XR_159054.1| PREDICTED: Homo sapiens uncharacterized LOC100996654 (LOC100996654), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139187|ref|XR_159054.1| PREDICTED: Homo sapiens uncharacterized LOC100996654 (LOC100996654), misc_RNA"	Chr7	 54827006	 54827639	+	100996654	XR_159054.1	NA	NA	NA	NA	NA	inter
CUST_41397_PI429285431	5.994065	P	6.1198783	P	0.916487240145468	0	lncRNA	42509-1_{1..89}	ENST00000582890 ncrna:miRNA chromosome:GRCh37:11:96074602:96074690:1 gene:ENSG00000266192 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582890 ncrna:miRNA chromosome:GRCh37:11:96074602:96074690:1 gene:ENSG00000266192 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 96074602	 96074690	+	ENSG00000266192	ENST00000582890	NA	NA	MAML2	"hg19_refFlat_MAML2:range=chr11:95712112-960750595'pad=0,hg19_refFlat_MAML2:range=chr11:95712112-960750595'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00chr11:96064602-96076344"	NA	inner
CUST_8859_PI429285431	4.019662	P	3.9142597	P	1.07579433723234	0	lncRNA	10398-1_{1..1260}	lnc-TTC26-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTC26-2:1	chr7	138720507	138721766	+	lnc-TTC26-2	lnc-TTC26-2:1	ENSG00000247079	ENST00000501433	ZC3HAV1	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZC3HAV1L:range=chr7:138711290-1387207635'pad=0,hg19_refFlat_ZC3HAV1L:range=chr7:138711290-1387207635'pad=0 3'pad=0 strand=- repeatMasking=none,-109.50chr7:138728266-138730833"	NA	inner
CUST_4652_PI429285431	3.2747416	P	3.6148486	P	0.789982719241077	0	lncRNA	4598-1_{1..387}	"transcript_id ""ENST00000434832.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434832.1"" | genecode_v17"	chr13	 75824616	 75825002	+	ENSG00000223880.1	ENST00000434832.1	RP11-159J2.2	RP11-159J2.2-001	NA	NA	NA	inter
CUST_51415_PI429285431	6.664331	P	6.910413	P	0.84318318398428	0	lncRNA	54992-1_{1..1261}	hg19_lincRNAsTranscripts_TCONS_l2_00009565 range=chr16:2454130-2461255 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009565 range=chr16:2454130-2461255 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	  2454130	  2455390	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014351	2.4441342	A	1.5785264	A	1.8221071498743	0	lncRNA	ENST00000451140	XR_109396	XR_109396	NA	Hs.656008	LOC100506325	NA	ENST00000451140	THC2705000	NA	"PREDICTED: Homo sapiens hypothetical LOC100506325 (LOC100506325), miscRNA [XR_109396]"	chr17:45976210-45976151	hs|17q21.32	Agilent_HUMAN_G3V2	ENST00000451140	ENST00000451140	chr17	 45976151	 45976210	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9224_PI429285431	0.91107315	A	0.8953422	A	1.01096352741922	0	lncRNA	10735-1_{1..726}	lnc-PLCD1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLCD1-1:10	chr3	 37795420	 37796145	-	lnc-PLCD1-1	lnc-PLCD1-1:10	ENSG00000243525	AC093415.3	ITGA9	NA	chr3:37785420-37805488	inner
CUST_19748_PI429285431	1.5691026	A	1.1487556	A	1.33824939459655	0	lncRNA	21406-1_{1..350}	lnc-TMEM187-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM187-1:1	chrX	153235236	153235585	+	lnc-TMEM187-1	lnc-TMEM187-1:1	ENSG00000235802.1	HCFC1-AS1	HCFC1	NA	chrX:153225236-153236819	inner
CUST_44163_PI429285431	0.91876256	A	1.1978549	A	0.824109335973504	0	lncRNA	48823-1_{1..2201}	"gi|257796259|ref|NR_028435.1| Homo sapiens aminomethyltransferase (AMT), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|257796259|ref|NR_028435.1| Homo sapiens aminomethyltransferase (AMT), transcript variant 5, non-coding RNA"	Chr3	 49454211	 49456411	-	275	NR_028435.1	NA	NA	NA	NA	NA	inter
CUST_21898_PI429285431	0.9919088	A	0.92145663	A	1.05004573776805	0	lncRNA	23507-1_{1..491}	lnc-IAH1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IAH1-1:2	chr2	  9652446	  9652936	+	lnc-IAH1-1	lnc-IAH1-1:2	ENSG00000239300.1	RP11-400L8.2	ADAM17	NA	chr2:9642446-9662541	inner
CUST_17881_PI429285431	2.6002266	A	2.1640673	A	1.35299761856156	0	lncRNA	19618-1_{1..1654}	lnc-AC073263.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC073263.1-1:4	chr2	 74375825	 74377478	+	lnc-AC073263.1-1	lnc-AC073263.1-1:4	XLOC_001532	linc-MTHFD2	MOBKL1B	NA	chr2:74383211-74387170	inter
CUST_50573_PI429285431	1.6615088	A	1.6932158	A	0.978262130607644	0	lncRNA	54266-1_{1..553}	hg19_lincRNAsTranscripts_TCONS_l2_00030914 range=chrY:26316687-26318468 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030914 range=chrY:26316687-26318468 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrY	 26316687	 26317239	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33834_PI429285431	2.7197978	A	3.0466073	A	0.79729774840285	0	lncRNA	35382-1_{1..679}	n340621|AF086294|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3083|NULL|-1.0368700|-0.2459139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n340621|AF086294|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3083|NULL|-1.0368700|-0.2459139	chr5	132446269	132446947	-	NA	NA	NA	NA	HSPA4	NA	chr5:132436269-132440709	inter
CUST_27392_PI429285431	0.919617	A	0.9050604	A	1.0101409405822	0	lncRNA	28955-1_{1..1032}	n324555|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000076582|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000076582|0.9190830|-0.4409097	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324555|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000076582|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000076582|0.9190830|-0.4409097	chr6	 29061958	 29062989	+	NA	NA	NA	NA	OR2J3	NA	chr6:29068720-29073240	inter
CUST_12402_PI429285431	0.9025118	A	1.6269928	A	0.605214727448057	0	lncRNA	14015-1_{1..2861}	lnc-ABT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABT1-1:1	chr6	 26604884	 26607744	+	lnc-ABT1-1	lnc-ABT1-1:1	XLOC_005213	linc-HIST1H2AG-5	ABT1	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-29.41;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00chr6:26597171-26600278"	NA	inter
CUST_41102_PI429285431	4.057111	P	4.263609	P	0.86663835932512	0	lncRNA	41827-1_{1..70}	ENST00000581799 ncrna:miRNA chromosome:GRCh37:3:15537746:15537815:-1 gene:ENSG00000263573 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581799 ncrna:miRNA chromosome:GRCh37:3:15537746:15537815:-1 gene:ENSG00000263573 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 15537746	 15537815	-	ENSG00000263573	ENST00000581799	NA	NA	COLQ	NA	chr3:15527746-15547815	inner
CUST_26543_PI429285431	5.3719926	P	3.6680665	P	3.25786336859275	0	lncRNA	28048-2_{3001..5730}	lnc-AL358813.2-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AL358813.2-2:6	chr1	149649918	149652647	+	lnc-AL358813.2-2	lnc-AL358813.2-2:6	ENSG00000232151.3	RP11-277L2.2	NA	NA	NA	inter
CUST_11162_PI429285431	1.2162702	A	1.9688829	A	0.593527713461124	0	lncRNA	12720-1_{1..901}	lnc-RP11-17M16.1.1-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-17M16.1.1-6:3	chr18	 73971772	 73972672	+	lnc-RP11-17M16.1.1-6	lnc-RP11-17M16.1.1-6:3	XLOC_012725	linc-ZNF236-5	NA	NA	NA	inter
CUST_51448_PI429285431	0.91732585	A	1.0840967	A	0.890834384761341	0	lncRNA	55025-1_{1..860}	hg19_lincRNAsTranscripts_TCONS_l2_00009674 range=chr16:31711972-31715953 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009674 range=chr16:31711972-31715953 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 31711972	 31712831	+	NA	NA	NA	NA	ZNF720	NA	chr16:31724550-31725953	inter
CUST_38192_PI429285431	4.532472	P	4.86367	P	0.79487615216219	0	lncRNA	39259-1_{1..862}	n381508|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kac.2||-0.8159340|-0.1960291	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381508|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kac.2||-0.8159340|-0.1960291	chr10	 80822812	 80823673	-	NA	NA	NA	NA	ZMIZ1	NA	chr10:80828792-80836911	inter
LNCA_21_P0009683	0.9235803	A	0.910409	A	1.00917145182574	0	lncRNA	TCONS_00026905	NA	NA	NA	NA	XLOC_012978	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012978), lincRNA [TCONS_00026905]"	chr19:14902488-14902547	hs|19p13.12	Agilent_HUMAN_G3V2	TCONS_00026905	TCONS_00026905	chr19	 14902488	 14902547	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24432_PI429285431	6.3788085	P	6.217187	P	1.11854360567854	0	lncRNA	25985-1_{1..376}	lnc-UNG-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UNG-1:2	chr12	109563066	109563441	+	lnc-UNG-1	lnc-UNG-1:2	ENSG00000256139.1	RP11-443D10.3	NA	NA	NA	inter
CUST_3975_PI429285431	5.0566792	P	6.5228906	P	0.361931504910125	0	lncRNA	3943-3_{6001..9000}	"transcript_id ""ENST00000501122.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000501122.2"" | genecode_v17"	chr11	 65196269	 65199268	+	ENSG00000245532.3	ENST00000501122.2	NEAT1	NEAT1-001	FRMD8	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr11:65180269-65180996"	NA	inter
CUST_658_PI429285431	6.4071856	P	6.653767	P	0.84289136014242	0	lncRNA	651-1_{1..416}	"transcript_id ""ENST00000419347.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419347.1"" | genecode_v17"	chr2	  3135757	  3136172	-	ENSG00000236760.1	ENST00000419347.1	AC019118.3	AC019118.3-001	NA	NA	NA	inter
CUST_10335_PI429285431	1.7531147	A	1.7640682	A	0.992436361727993	0	lncRNA	11864-1_{1..902}	lnc-DMRTA1-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRTA1-7:2	chr9	 24551961	 24552862	+	lnc-DMRTA1-7	lnc-DMRTA1-7:2	XLOC_007304	linc-IFT74-3	NA	"hg19_refFlat_IZUMO3:range=chr9:24543227-245456475'pad=0,hg19_refFlat_IZUMO3:range=chr9:24543227-245456475'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60"	NA	inter
CUST_38583_PI429285431	0.9119171	A	1.0247902	A	0.924744615421615	0	lncRNA	39594-1_{1..1065}	n383604|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002rlw.2||-1.1669400|-0.4240144	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383604|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002rlw.2||-1.1669400|-0.4240144	chr2	 28206828	 28207892	-	NA	NA	NA	NA	BRE	"hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0,hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80chr2:28196828-28217893"	NA	inner
CUST_22740_PI429285431	2.1743202	A	2.0504487	A	1.08965505295527	0	lncRNA	24323-1_{1..679}	lnc-GNAI1-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNAI1-2:12	chr7	 79100099	 79100777	+	lnc-GNAI1-2	lnc-GNAI1-2:12	ENSG00000234456.2	MAGI2-AS3	NA	NA	NA	inter
CUST_7628_PI429285431	0.9438632	A	0.9203677	A	1.0164191767186	0	lncRNA	9260-1_{1..1436}	lnc-SLC38A6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC38A6-1:1	chr14	 61236109	 61237544	+	lnc-SLC38A6-1	lnc-SLC38A6-1:1	ENSG00000236622	ENST00000510874	MNAT1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20chr14:61226109-61246361"	NA	inner
CUST_17386_PI429285431	2.6838634	A	3.1717257	A	0.713080916416767	0	lncRNA	19108-1_{1..781}	lnc-PPP1R1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-PPP1R1A-1:1	chr12	 55003964	 55004744	-	lnc-PPP1R1A-1	lnc-PPP1R1A-1:1	XLOC_010090	linc-PPP1R1A	NA	NA	NA	inter
CUST_12285_PI429285431	0.95083034	A	0.922809	A	1.01961276475481	0	lncRNA	13894-1_{1..470}	lnc-IL17A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL17A-1:1	chr6	 52068380	 52068849	+	lnc-IL17A-1	lnc-IL17A-1:1	XLOC_005319	linc-PAQR8-2	NA	NA	NA	inter
CUST_19696_PI429285431	1.8424504	A	1.320432	A	1.43596282464458	0	lncRNA	21354-1_{1..768}	lnc-DGCR6-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DGCR6-2:6	chr22	 19002111	 19002878	+	lnc-DGCR6-2	lnc-DGCR6-2:6	ENSG00000237517.3	DGCR5	NA	"hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00"	NA	inter
CUST_41729_PI429285431	7.392612	P	7.7462144	P	0.782627440476985	0	lncRNA	43256-1_{1..76}	ENST00000577581 ncrna:miRNA chromosome:GRCh37:1:162126897:162126972:1 gene:ENSG00000266144 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577581 ncrna:miRNA chromosome:GRCh37:1:162126897:162126972:1 gene:ENSG00000266144 gene_biotype:miRNA transcript_biotype:miRNA	chr1	162126897	162126972	+	ENSG00000266144	ENST00000577581	NA	NA	NOS1AP	NA	chr1:162116897-162136972	inner
LNCA_21_P0010620	0.92972547	A	1.1243846	A	0.873779322060436	0	lncRNA	TCONS_l2_00001274	NA	NA	NA	NA	XLOC_l2_000942	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000942), lincRNA [TCONS_l2_00001274]"	chr1:65451128-65450881	hs|1p31.3	Agilent_HUMAN_G3V2	TCONS_l2_00001274	TCONS_l2_00001274	chr1	 65450881	 65451128	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15546_PI429285431	2.5592134	A	1.3249671	A	2.35258410451733	0	lncRNA	17232-2_{3001..5855}	lnc-TFRC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TFRC-1:1	chr3	195730626	195733480	-	lnc-TFRC-1	lnc-TFRC-1:1	XLOC_003397	linc-TNK2-1	NA	NA	NA	inter
CUST_7598_PI429285431	0.92022204	A	0.917324	A	1.00201078718173	0	lncRNA	9233-1_{1..471}	lnc-C20orf197-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf197-3:2	chr20	 58676150	 58676620	+	lnc-C20orf197-3	lnc-C20orf197-3:2	ENSG00000228340	RP5-1043L13.1	NA	NA	NA	inter
CUST_6338_PI429285431	9.45627	P	10.06882	P	0.654039648037466	0	lncRNA	6261-1_{1..635}	"transcript_id ""ENST00000593554.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593554.1"" | genecode_v17"	chr19	 12793507	 12794141	-	ENSG00000268945.1	ENST00000593554.1	CTD-2192J16.26	CTD-2192J16.26-001	WDR83	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.61;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30chr19:12783507-12786646"	NA	inter
CUST_29148_PI429285431	4.890802	P	5.078601	P	0.877944106530032	0	lncRNA	30891-1_{1..481}	n326658|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091345|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091345|-1.2139900|-0.3080642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326658|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091345|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091345|-1.2139900|-0.3080642	chr1	 30661258	 30661738	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35880_PI429285431	0.92353237	A	0.9119998	A	1.00802580385105	0	lncRNA	37268-1_{1..3000}	n344541|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_89|NULL|-1.3457300|-0.2149630	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344541|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_89|NULL|-1.3457300|-0.2149630	chr12	132589590	132592589	+	NA	NA	NA	NA	DDX51	"hg19_refFlat_PLAC8:range=chr4:84015840-840290745'pad=0,hg19_refFlat_PLAC8:range=chr4:84015840-840290745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00chr12:132621139-132625587"	NA	inter
CUST_5791_PI429285431	0.92754173	A	0.92470706	A	1.00196677508821	0	lncRNA	5713-1_{1..614}	"transcript_id ""ENST00000581944.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000581944.1"" | genecode_v17"	chr17	 25564885	 25565498	-	ENSG00000265246.1	ENST00000581944.1	RP11-663N22.1	RP11-663N22.1-001	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50"	NA	inter
CUST_33701_PI429285431	1.0389922	A	1.113754	A	0.94949887754564	0	lncRNA	35262-1_{1..1929}	n340479|BC043508|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2940|NULL|-0.5972210|-0.1653261	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340479|BC043508|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2940|NULL|-0.5972210|-0.1653261	chr17	  5675553	  5677481	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40"	NA	inter
CUST_9927_PI429285431	2.9003868	A	2.6002266	A	1.23128112989292	0	lncRNA	11452-1_{1..643}	lnc-CPNE5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPNE5-1:2	chr6	 36811983	 36812625	-	lnc-CPNE5-1	lnc-CPNE5-1:2	XLOC_005701	linc-CPNE5	CPNE5	NA	chr6:36801983-36807220	inter
CUST_49397_PI429285431	0.9315735	A	1.215287	A	0.821473818302838	0	lncRNA	53207-2_{3001..3890}	hg19_lincRNAsTranscripts_TCONS_l2_00022617 range=chr5:171212596-171222385 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022617 range=chr5:171212596-171222385 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	171215596	171216485	+	NA	NA	NA	NA	C5orf50	"hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0,hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30chr5:171202596-171232385"	NA	inter
CUST_18301_PI429285431	3.7790725	P	3.4637604	P	1.24428080098732	0	lncRNA	20031-1_{1..263}	lnc-ZSWIM2-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZSWIM2-6:2	chr2	186603634	186603896	-	lnc-ZSWIM2-6	lnc-ZSWIM2-6:2	ENSG00000226747	AC007966.1	FSIP2	"hg19_refFlat_FSIP2:range=chr2:186603355-1866979535'pad=0,hg19_refFlat_FSIP2:range=chr2:186603355-1866979535'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.50chr2:186603355-186613752"	NA	inner
LNCA_21_P0006881	2.5109875	A	2.7399318	A	0.853259040355406	0	lncRNA	TCONS_00018230	NA	NA	NA	NA	XLOC_008510	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008510), lincRNA [TCONS_00018230]"	chr10:73140559-73140618	hs|10q22.1	Agilent_HUMAN_G3V2	TCONS_00018230	TCONS_00018230	chr10	 73140559	 73140618	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4680_PI429285431	1.539593	A	2.031248	A	0.711208760419435	0	lncRNA	4627-1_{1..533}	"transcript_id ""ENST00000602560.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602560.1"" | genecode_v17"	chr13	103331776	103332308	+	ENSG00000269942.1	ENST00000602560.1	RP11-29B2.5	RP11-29B2.5-001	TPP2	NA	chr13:103321776-103331524	inter
LNCA_21_P0010289	0.9913584	A	0.9407921	A	1.03567137537062	0	lncRNA	TCONS_00029160	NA	NA	NA	NA	XLOC_014104	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014104), lincRNA [TCONS_00029160]"	chr21:44810225-44810166	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029160	TCONS_00029160	chr21	 44810166	 44810225	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6331_PI429285431	11.178505	P	11.053382	P	1.09060071015901	0	lncRNA	6255-1_{1..377}	"transcript_id ""ENST00000589757.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589757.1"" | genecode_v17"	chr19	 10332113	 10332489	-	ENSG00000175898.4	ENST00000589757.1	CTD-2369P2.2	CTD-2369P2.2-001	S1PR2	NA	chr19:10332109-10341948	inner
CUST_28393_PI429285431	5.8210626	P	5.72785	P	1.0667429677903	0	lncRNA	30048-1_{1..433}	n325711|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045191|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045191|-0.8104060|-0.2730770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325711|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045191|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045191|-0.8104060|-0.2730770	chr13	 62144418	 62144850	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46180_PI429285431	0.9083126	A	0.9137791	A	0.996218080477231	0	lncRNA	50426-2_{3001..5044}	"gi|384871673|ref|NR_047595.1| Homo sapiens centromere protein J (CENPJ), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384871673|ref|NR_047595.1| Homo sapiens centromere protein J (CENPJ), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_047595.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007420	3.359526	P	3.4210317	P	0.95826348475955	0	lncRNA	TCONS_00019804	NA	NA	NA	NA	XLOC_009603	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009603), lincRNA [TCONS_00019804]"	chr11:130086539-130086480	hs|11q24.3	Agilent_HUMAN_G3V2	TCONS_00019804	TCONS_00019804	chr11	130086480	130086539	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29545_PI429285431	2.8952632	A	2.4228234	A	1.38745386461028	0	lncRNA	31304-1_{1..395}	n333023|AF161342|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072072|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072072|1.7307000|-0.1316964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333023|AF161342|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072072|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072072|1.7307000|-0.1316964	chr11	 64569640	 64570034	+	NA	NA	NA	NA	MAP4K2	"hg19_refFlat_MAP4K2:range=chr11:64557009-645706215'pad=0,hg19_refFlat_MAP4K2:range=chr11:64557009-645706215'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90chr11:64559640-64570713"	NA	inner
CUST_6166_PI429285431	0.909729	A	0.9045498	A	1.00359639945841	0	lncRNA	6091-2_{3001..3376}	"transcript_id ""ENST00000593234.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000593234.1"" | genecode_v17"	chr18	 39769633	 39770008	+	ENSG00000267586.2	ENST00000593234.1	RP11-21F16.1	RP11-21F16.1-001	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_12928_PI429285431	5.704846	P	6.6626806	P	0.514829061706218	0	lncRNA	14556-1_{1..520}	lnc-DTNBP1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DTNBP1-4:1	chr6	 15184773	 15185292	-	lnc-DTNBP1-4	lnc-DTNBP1-4:1	XLOC_005619	linc-CCDC90A-7	NA	NA	NA	inter
CUST_9548_PI429285431	0.9460027	A	0.92922044	A	1.01170049772892	0	lncRNA	11063-1_{1..251}	lnc-MFHAS1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MFHAS1-2:1	chr8	  8845946	  8846196	-	lnc-MFHAS1-2	lnc-MFHAS1-2:1	XLOC_006997	linc-MFHAS1-2	NA	NA	NA	inter
CUST_30005_PI429285431	3.8353603	P	3.1160626	P	1.64638038596193	0	lncRNA	31771-1_{1..458}	n334405|S82401|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000217161|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000217161|1.1217000|-0.1971629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334405|S82401|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000217161|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000217161|1.1217000|-0.1971629	chr10	  5454649	  5455106	+	NA	NA	NA	NA	TUBAL3	NA	chr10:5444649-5446793	inter
CUST_7255_PI429285431	0.9554119	A	0.9349874	A	1.01425787211664	0	lncRNA	7999-1_{1..280}	"transcript_id ""ENST00000471086.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000471086.2"" | genecode_v17"	chr8	120874902	120875181	+	ENSG00000244642.2	ENST00000471086.2	RN7SL396P	RN7SL396P-201	DSCC1	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00chr8:120864902-120868170"	NA	inter
CUST_49964_PI429285431	0.9376978	A	1.1224456	A	0.879802862330901	0	lncRNA	53713-1_{1..1137}	hg19_lincRNAsTranscripts_TCONS_l2_00026251 range=chr7:142927260-142928714 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026251 range=chr7:142927260-142928714 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	142927260	142928396	+	NA	NA	NA	NA	TAS2R40	NA	chr7:142919172-142920143	inter
CUST_18718_PI429285431	1.3347503	A	1.3149322	A	1.01383164431734	0	lncRNA	20416-1_{1..2073}	lnc-MGST1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MGST1-1:1	chr12	 16848513	 16850585	+	lnc-MGST1-1	lnc-MGST1-1:1	ENSG00000255871	RP11-69C13.1	NA	NA	NA	inter
CUST_18198_PI429285431	2.2951362	A	2.643983	A	0.785211495971587	0	lncRNA	19933-1_{1..547}	lnc-WFIKKN2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WFIKKN2-1:3	chr17	 48986197	 48986743	+	lnc-WFIKKN2-1	lnc-WFIKKN2-1:3	ENSG00000229980	AC091062.2	NA	NA	NA	inter
CUST_27196_PI429285431	1.2510833	A	0.95377177	A	1.22885230542288	0	lncRNA	28738-1_{1..385}	n324328|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042896|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042896|-0.2578480|-0.4721685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324328|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042896|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042896|-0.2578480|-0.4721685	chr6	159506928	159507312	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007934	8.135126	P	8.663805	P	0.693189160425842	0	lncRNA	ENST00000426509	NA	NA	NA	NA	XLOC_010372	NA	ENST00000426509	NA	NA	"BROAD Institute lincRNA (XLOC_010372), lincRNA [TCONS_00021544]"	chr13:45275093-45275152	hs|13q14.12	Agilent_HUMAN_G3V2	ENST00000426509	ENST00000426509	chr13	 45275093	 45275152	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6701_PI429285431	2.908656	P	2.6024725	A	1.23643251587213	0	lncRNA	6650-1_{1..514}	"transcript_id ""ENST00000424705.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424705.1"" | genecode_v17"	chr20	 44076042	 44076555	+	ENSG00000234011.2	ENST00000424705.1	RP3-461P17.10	RP3-461P17.10-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70"	NA	inter
CUST_14115_PI429285431	2.2881796	A	2.2392516	A	1.03449595205802	0	lncRNA	15763-1_{1..1160}	lnc-POTEB-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POTEB-4:1	chr15	 22527547	 22528706	-	lnc-POTEB-4	lnc-POTEB-4:1	XLOC_011396	linc-POTEB-1	NA	NA	NA	inter
CUST_18421_PI429285431	0.9207359	A	0.914647	A	1.00422942273712	0	lncRNA	20146-1_{1..561}	lnc-KCNC3-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNC3-1:5	chr19	 50837564	 50838124	-	lnc-KCNC3-1	lnc-KCNC3-1:5	ENSG00000131401	NAPSB	KCNC3	NA	chr19:50827564-50832634	inter
CUST_30638_PI429285431	3.6723988	P	2.6454763	A	2.03767292873179	0	lncRNA	32420-1_{1..250}	n336001|X75686|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323538|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323538|0.0364289|-0.1292128	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336001|X75686|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323538|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323538|0.0364289|-0.1292128	chr4	152096409	152096658	-	NA	NA	NA	NA	SH3D19	NA	chr4:152086409-152106659	inner
CUST_19733_PI429285431	5.690182	P	5.9552045	P	0.832185755998083	0	lncRNA	21391-1_{1..420}	lnc-C17orf75-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C17orf75-2:1	chr17	 30846043	 30846462	-	lnc-C17orf75-2	lnc-C17orf75-2:1	ENSG00000263717.1	RP11-466A19.6	MYO1D	NA	chr17:30836043-30856368	inner
CUST_3361_PI429285431	0.9174005	A	0.9120603	A	1.00370840375031	0	lncRNA	3336-1_{1..501}	"transcript_id ""ENST00000435444.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435444.1"" | genecode_v17"	chr9	  7960413	  7960913	-	ENSG00000231902.1	ENST00000435444.1	RP11-29B9.2	RP11-29B9.2-001	NA	NA	NA	inter
CUST_3200_PI429285431	5.230669	P	5.692301	P	0.726164344996818	0	lncRNA	3179-1_{1..498}	"transcript_id ""ENST00000517365.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517365.1"" | genecode_v17"	chr8	 80732804	 80733301	-	ENSG00000249328.2	ENST00000517365.1	RP11-26J3.1	RP11-26J3.1-002	NA	NA	NA	inter
CUST_14998_PI429285431	5.6479025	P	5.3820777	P	1.20232323063723	0	lncRNA	16660-1_{1..520}	lnc-TSEN2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSEN2-1:2	chr3	 12517762	 12518281	+	lnc-TSEN2-1	lnc-TSEN2-1:2	XLOC_002577	linc-TSEN2	TSEN2	NA	chr3:12525931-12528022	inter
CUST_37292_PI429285431	2.1008809	A	2.747371	A	0.638832625988532	0	lncRNA	38401-1_{1..418}	n345735|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1284|NULL|-1.2729200|-0.1214897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345735|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1284|NULL|-1.2729200|-0.1214897	chr17	 30433375	 30433792	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15897_PI429285431	7.6379104	P	8.619798	P	0.506316849154275	0	lncRNA	17589-1_{1..1126}	lnc-NACA2-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NACA2-2:5	chr17	 59473370	 59474495	-	lnc-NACA2-2	lnc-NACA2-2:5	XLOC_012542	linc-APPBP2-2	BCAS3	NA	chr17:59463370-59470199	inter
CUST_33341_PI429285431	0.9238767	A	1.5558054	A	0.645313136712588	0	lncRNA	34923-1_{1..1523}	n340060|BC015007|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2515|NULL|-0.8776830|-0.1232811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340060|BC015007|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2515|NULL|-0.8776830|-0.1232811	chr10	 72163580	 72165102	-	NA	NA	NA	NA	EIF4EBP2	"hg19_refFlat_EIF4EBP2:range=chr10:72164158-721815035'pad=0,hg19_refFlat_EIF4EBP2:range=chr10:72164158-721815035'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.70chr10:72153580-72175086"	NA	inner
CUST_194_PI429285431	2.4393678	A	2.484913	A	0.968923587792477	0	lncRNA	184-1_{1..688}	"transcript_id ""ENST00000427804.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427804.1"" | genecode_v17"	chr1	 28972603	 28973290	+	ENSG00000229388.1	ENST00000427804.1	RP11-442N24__B.1	RP11-442N24__B.1-002	TAF12	"hg19_refFlat_C11orf44:range=chr11:130542874-1305840925'pad=0,hg19_refFlat_C11orf44:range=chr11:130542874-1305840925'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20chr1:28962603-28969604"	NA	inter
CUST_25584_PI429285431	2.952067	A	2.0856578	A	1.8231195899782	0	lncRNA	27114-1_{1..3000}	lnc-BLID-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-BLID-1:5	chr11	121972155	121975154	-	lnc-BLID-1	lnc-BLID-1:5	ENSG00000255248.2	RP11-166D19.1	NA	NA	NA	inter
CUST_19945_PI429285431	0.91850436	A	0.91010493	A	1.00583902224355	0	lncRNA	21600-1_{1..583}	lnc-MAT2B-3:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MAT2B-3:16	chr5	163969852	163970434	+	lnc-MAT2B-3	lnc-MAT2B-3:16	ENSG00000241956.5	CTC-340A15.2	NA	NA	NA	inter
CUST_6254_PI429285431	2.9600945	A	3.1238563	P	0.892694349979782	0	lncRNA	6179-1_{1..457}	"transcript_id ""ENST00000580403.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580403.1"" | genecode_v17"	chr18	 71878626	 71879082	-	ENSG00000260569.2	ENST00000580403.1	RP11-669I1.1	RP11-669I1.1-002	NA	NA	NA	inter
CUST_11575_PI429285431	0.9036283	A	0.9000649	A	1.00247301352901	0	lncRNA	13154-1_{1..324}	lnc-MEF2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MEF2A-1:1	chr15	100379288	100379611	+	lnc-MEF2A-1	lnc-MEF2A-1:1	XLOC_011383	linc-ASB7-4	NA	NA	NA	inter
CUST_4759_PI429285431	4.5908575	P	5.060415	P	0.722186070992874	0	lncRNA	4704-1_{1..738}	"transcript_id ""ENST00000550122.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550122.1"" | genecode_v17"	chr14	 29299456	 29300193	+	ENSG00000258038.1	ENST00000550122.1	CTD-2384A14.1	CTD-2384A14.1-002	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10"	NA	inter
CUST_39385_PI429285431	1.2782456	A	0.9000478	A	1.29971724733953	0	lncRNA	40348-1_{1..1620}	n386534|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ngy.1||4.6498900|-0.2313582	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386534|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ngy.1||4.6498900|-0.2313582	chrX	 37478968	 37480587	+	NA	NA	NA	NA	LANCL3	NA	chrX:37468968-37490588	inner
CUST_25934_PI429285431	7.2679334	P	7.51542	P	0.842362664939961	0	lncRNA	27453-1_{1..516}	lnc-GPT2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPT2-1:2	chr16	 47012516	 47013031	+	lnc-GPT2-1	lnc-GPT2-1:2	ENSG00000261173.1	RP11-169E6.1	DNAJA2	NA	chr16:47002516-47007625	inter
CUST_2570_PI429285431	1.4059198	A	1.0866928	A	1.24766186909116	0	lncRNA	2558-1_{1..87}	"transcript_id ""ENST00000565962.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565962.1"" | genecode_v17"	chr6	 82679170	 82679256	-	ENSG00000260574.1	ENST00000565962.1	RP11-801I18.1	RP11-801I18.1-001	NA	NA	NA	inter
CUST_33657_PI429285431	3.0617707	A	3.2008886	A	0.908074205001208	0	lncRNA	35220-1_{1..1329}	n340420|AK098554|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2881|NULL|-1.0621000|-0.3871906	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340420|AK098554|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2881|NULL|-1.0621000|-0.3871906	chr5	 21581200	 21582528	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006684	4.1570473	P	4.2234697	P	0.955003284456338	0	lncRNA	ENST00000415746	NA	NA	NA	NA	XLOC_008508	NA	ENST00000415746	NA	NA	"BROAD Institute lincRNA (XLOC_008508), lincRNA [TCONS_00017840]"	chr10:72691712-72691771	hs|10q22.1	Agilent_HUMAN_G3V2	ENST00000415746	ENST00000415746	chr10	 72691712	 72691771	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009469	0.97296184	A	0.9266947	A	1.03258971967161	0	lncRNA	TCONS_00026302	NA	NA	NA	NA	XLOC_012647	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012647), lincRNA [TCONS_00026302]"	chr18:24017933-24017992	hs|18q11.2	Agilent_HUMAN_G3V2	TCONS_00026302	TCONS_00026302	chr18	 24017933	 24017992	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009480	0.9758604	A	0.9264649	A	1.03483123097081	0	lncRNA	TCONS_00026332	NA	NA	NA	NA	XLOC_012679	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012679), lincRNA [TCONS_00026332]"	chr18:51107119-51107178	hs|18q21.2	Agilent_HUMAN_G3V2	TCONS_00026332	TCONS_00026332	chr18	 51107119	 51107178	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14609_PI429285431	0.9232569	A	0.9129738	A	1.00715316429918	0	lncRNA	16277-1_{1..330}	lnc-CNTNAP5-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CNTNAP5-5:1	chr2	123804833	123805162	+	lnc-CNTNAP5-5	lnc-CNTNAP5-5:1	XLOC_001653	linc-CNTNAP5-3	NA	NA	NA	inter
CUST_8841_PI429285431	8.861635	P	9.1205435	P	0.835719961080589	0	lncRNA	10380-1_{1..648}	lnc-KIAA1755-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1755-5:1	chr20	 37063670	 37064317	-	lnc-KIAA1755-5	lnc-KIAA1755-5:1	ENSG00000196756	RP4-564F22.2	NA	NA	NA	inter
CUST_8250_PI429285431	2.2194853	A	2.0131745	A	1.15373412739834	0	lncRNA	9840-2_{3001..5619}	lnc-SLC9A11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SLC9A11-2:1	chr1	173448771	173451389	-	lnc-SLC9A11-2	lnc-SLC9A11-2:1	ENSG00000247291	AL645568.1	PRDX6	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20chr1:173446486-173456294"	NA	inter
CUST_28615_PI429285431	1.6353447	A	1.8119555	A	0.884779092544796	0	lncRNA	30299-1_{1..2444}	n325983|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047838|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047838|-0.9686420|-0.2410989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325983|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047838|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047838|-0.9686420|-0.2410989	chr10	 46516459	 46518902	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49674_PI429285431	1.7960696	A	0.97712237	A	1.76411820239816	0	lncRNA	53453-1_{1..1881}	hg19_lincRNAsTranscripts_TCONS_l2_00026958 range=chr7:149244300-149318397 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026958 range=chr7:149244300-149318397 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	149244300	149246180	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002548	0.9779692	A	0.9242943	A	1.0379053603654	0	lncRNA	TCONS_00004610	NA	NA	NA	NA	XLOC_002514	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002514), lincRNA [TCONS_00004610]"	chr2:231451422-231451363	hs|2q37.1	Agilent_HUMAN_G3V2	TCONS_00004610	TCONS_00004610	chr2	231451363	231451422	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17341_PI429285431	2.8742452	A	3.1877334	A	0.804693787628318	0	lncRNA	19059-1_{1..3000}	lnc-NDFIP2-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDFIP2-2:9	chr13	 79997687	 80000686	+	lnc-NDFIP2-2	lnc-NDFIP2-2:9	XLOC_010445	linc-NDFIP2-1	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80"	NA	inter
CUST_10307_PI429285431	1.1270528	A	1.594049	A	0.723469348521562	0	lncRNA	11835-1_{1..426}	lnc-ISX-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ISX-1:1	chr22	 35034049	 35034474	+	lnc-ISX-1	lnc-ISX-1:1	XLOC_014218	linc-ISX-1	NA	NA	NA	inter
LNCA_21_P0001668	2.555532	A	3.3907764	P	0.560488081392093	0	lncRNA	AF085854	NA	AF085854	NA	Hs.259664	XLOC_000102	NA	NA	THC2546841	NA	"BROAD Institute lincRNA (XLOC_000102), lincRNA [TCONS_00001962]"	chr1:26375258-26375317	hs|1p36.11	Agilent_HUMAN_G3V2	AF085854	AF085854	chr1	 26375258	 26375317	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40180_PI429285431	2.9768043	P	3.0189075	A	0.97123801769247	0	lncRNA	41014-1_{1..2743}	n407950|NR_027655|lncRNA|Homosapiens||RefGeneNoncode|NR_027655||7.5734800|-0.1452770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n407950|NR_027655|lncRNA|Homosapiens||RefGeneNoncode|NR_027655||7.5734800|-0.1452770	chr21	 30677559	 30680301	+	NA	NA	NA	NA	BACH1	NA	chr21:30667559-30734217	inter
CUST_3928_PI429285431	3.9400322	P	4.734172	P	0.576686917720611	0	lncRNA	3898-1_{1..2045}	"transcript_id ""ENST00000501541.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000501541.1"" | genecode_v17"	chr11	 43965337	 43967381	-	ENSG00000244953.1	ENST00000501541.1	RP11-613D13.8	RP11-613D13.8-001	C11orf96	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chr11:43964106-43965433"	NA	inner
CUST_26448_PI429285431	4.6489277	P	4.5145416	P	1.09762564938085	0	lncRNA	27956-1_{1..447}	lnc-HSP90AA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSP90AA1-1:1	chr14	102532359	102532805	-	lnc-HSP90AA1-1	lnc-HSP90AA1-1:1	ENSG00000258959.1	RP11-1017G21.4	NA	"hg19_refFlat_DYNC1H1:range=chr14:102431029-1025169005'pad=0,hg19_refFlat_DYNC1H1:range=chr14:102431029-1025169005'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40"	NA	inter
CUST_29166_PI429285431	7.8736334	P	8.145079	P	0.828488972572785	0	lncRNA	30909-1_{1..771}	n326677|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096538|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096538|-1.0124700|-0.2384404	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326677|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096538|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096538|-1.0124700|-0.2384404	chr1	 22224590	 22225360	+	NA	NA	NA	NA	HSPG2	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80chr1:22214590-22239880"	NA	inner
CUST_25728_PI429285431	4.3938894	P	3.9650636	P	1.34613751842095	0	lncRNA	27255-1_{1..441}	lnc-AC016251.1-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC016251.1-1:11	chr15	 96819146	 96819586	-	lnc-AC016251.1-1	lnc-AC016251.1-1:11	ENSG00000247809.3	RP11-327J17.3	NA	NA	NA	inter
CUST_35134_PI429285431	2.0611525	A	2.608398	A	0.684325446596012	0	lncRNA	36536-1_{1..432}	n342102|AF086525|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4584|NULL|-0.9326750|-0.2527234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342102|AF086525|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4584|NULL|-0.9326750|-0.2527234	chr6	109330906	109331337	+	NA	NA	NA	NA	SESN1	NA	chr6:109320906-109341329	inner
CUST_51176_PI429285431	6.92338	P	6.8440075	P	1.05655839068663	0	lncRNA	54797-1_{1..631}	hg19_lincRNAsTranscripts_TCONS_l2_00007786 range=chr14:69328478-69329425 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007786 range=chr14:69328478-69329425 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 69328478	 69329108	+	NA	NA	NA	NA	ACTN1	NA	chr14:69328440-69339425	inter
LNCA_21_P0012934	0.9498253	A	0.91646373	A	1.02339392183637	0	lncRNA	TCONS_l2_00023265	NA	NA	NA	NA	XLOC_l2_012323	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012323), lincRNA [TCONS_l2_00023265]"	chr5:175598926-175598867	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_l2_00023265	TCONS_l2_00023265	chr5	175598867	175598926	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49556_PI429285431	8.63047	P	8.814129	P	0.880467098981264	0	lncRNA	53345-1_{1..362}	hg19_lincRNAsTranscripts_TCONS_l2_00024833 range=chr6:85130755-85157439 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024833 range=chr6:85130755-85157439 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 85130755	 85131116	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39807_PI429285431	0.9093826	A	0.90537125	A	1.00278432499544	0	lncRNA	40716-1_{1..652}	n406217|NR_003673_3|lncRNA|Homosapiens||RefGeneNoncode|NR_003673_3||-1.1203400|-0.2787079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406217|NR_003673_3|lncRNA|Homosapiens||RefGeneNoncode|NR_003673_3||-1.1203400|-0.2787079	chr6	  3010934	  3011585	-	NA	NA	NA	NA	NQO2	NA	chr6:3000934-3019994	inner
CUST_29202_PI429285431	6.7191763	P	6.8039165	P	0.942954327503262	0	lncRNA	30949-1_{1..356}	n326719|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001544|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001544|-0.7911120|-0.2028668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326719|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001544|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001544|-0.7911120|-0.2028668	chr1	  4511654	  4512009	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33436_PI429285431	0.92081565	A	1.178211	A	0.836596953804647	0	lncRNA	35014-1_{1..2064}	n340166|BC029124|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2627|NULL|-0.9032260|-0.1215391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340166|BC029124|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2627|NULL|-0.9032260|-0.1215391	chr10	123921859	123923922	-	NA	NA	NA	NA	TACC2	"hg19_refFlat_TACC2:range=chr10:123923440-1240135715'pad=0,hg19_refFlat_TACC2:range=chr10:123923440-1240135715'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10chr10:123911859-123933892"	NA	inner
CUST_49009_PI429285431	6.2203894	P	6.5706663	P	0.784433525195595	0	lncRNA	52838-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00019116 range=chr3:197360474-197372879 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019116 range=chr3:197360474-197372879 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	197366474	197369473	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009359	0.9301769	A	0.9126657	A	1.01221180142032	0	lncRNA	TCONS_00025757	NA	NA	NA	NA	XLOC_012568	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012568), lincRNA [TCONS_00025757]"	chr17:70399153-70399094	hs|17q24.3	Agilent_HUMAN_G3V2	TCONS_00025757	TCONS_00025757	chr17	 70399094	 70399153	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2592_PI429285431	9.194924	P	9.737891	P	0.686357915100674	0	lncRNA	2580-1_{1..575}	"transcript_id ""ENST00000369123.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000369123.3"" | genecode_v17"	chr6	105384169	105384743	-	ENSG00000203809.5	ENST00000369123.3	LINC00577	LINC00577-001	NA	NA	NA	inter
CUST_50134_PI429285431	8.80962	P	8.603896	P	1.15326495442547	0	lncRNA	53861-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00029075 range=chr9:132250951-132269891 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029075 range=chr9:132250951-132269891 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132250951	132253950	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10"	NA	inter
CUST_21657_PI429285431	1.435481	A	0.8936309	A	1.45583827552197	0	lncRNA	23268-1_{1..720}	lnc-AGR3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGR3-1:4	chr7	 17337976	 17338695	-	lnc-AGR3-1	lnc-AGR3-1:4	ENSG00000237773.1	AC003075.4	AHR	NA	chr7:17338276-17348070	inter
CUST_27278_PI429285431	0.91073215	A	0.9179389	A	0.995017117510383	0	lncRNA	28834-1_{1..1751}	n324427|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317439|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317439|0.0637318|-0.3263644	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324427|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317439|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317439|0.0637318|-0.3263644	chr6	109179551	109181301	+	NA	NA	NA	NA	ARMC2	NA	chr6:109169551-109207838	inner
CUST_5302_PI429285431	7.2318435	P	7.4226856	P	0.876094196524905	0	lncRNA	5242-1_{1..352}	"transcript_id ""ENST00000561101.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561101.1"" | genecode_v17"	chr15	 90645881	 90646232	+	ENSG00000259685.1	ENST00000561101.1	CTD-2315E11.1	CTD-2315E11.1-001	IDH2	NA	chr15:90635881-90645708	inter
CUST_18558_PI429285431	0.9087717	A	0.90009105	A	1.00603510638629	0	lncRNA	20269-1_{1..1320}	lnc-EIF3M-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EIF3M-2:1	chr11	 32459391	 32460710	+	lnc-EIF3M-2	lnc-EIF3M-2:1	ENSG00000183242	WT1-AS	WT1	NA	chr11:32449391-32457081	inter
CUST_23754_PI429285431	2.1009316	A	2.128716	A	0.980925585038815	0	lncRNA	25317-1_{1..273}	lnc-EPHA8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-EPHA8-1:1	chr1	 22846099	 22846371	+	lnc-EPHA8-1	lnc-EPHA8-1:1	ENSG00000237200.1	ZBTB40-IT1	ZBTB40	NA	chr1:22836099-22856201	inner
CUST_3177_PI429285431	0.88932097	A	0.88797367	A	1.00093431339545	0	lncRNA	3157-1_{1..3000}	"transcript_id ""ENST00000564832.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564832.1"" | genecode_v17"	chr8	 73859385	 73862384	+	ENSG00000260838.2	ENST00000564832.1	RP11-531A24.3	RP11-531A24.3-001	KCNB2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10chr8:73849385-73850584"	NA	inter
CUST_15801_PI429285431	1.3620421	A	0.89958453	A	1.37788699234972	0	lncRNA	17491-2_{3001..3360}	lnc-KHDRBS3-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KHDRBS3-6:1	chr8	135737039	135737398	+	lnc-KHDRBS3-6	lnc-KHDRBS3-6:1	XLOC_006933	linc-KHDRBS3-5	ZFAT	NA	chr8:135724039-135725292	inter
CUST_22466_PI429285431	0.90939057	A	0.9003489	A	1.00628688810803	0	lncRNA	24053-1_{1..482}	lnc-C15orf52-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C15orf52-2:1	chr15	 40661472	 40661953	-	lnc-C15orf52-2	lnc-C15orf52-2:1	ENSG00000259368.1	RP11-64K12.4	DISP2	"hg19_refFlat_DISP2:range=chr15:40650523-406625195'pad=0,hg19_refFlat_DISP2:range=chr15:40650523-406625195'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90chr15:40651472-40663256"	NA	inner
CUST_3147_PI429285431	1.4647614	A	2.1222868	A	0.633964780622494	0	lncRNA	3126-1_{1..718}	"transcript_id ""ENST00000603538.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603538.1"" | genecode_v17"	chr8	 64080284	 64081001	-	ENSG00000270673.1	ENST00000603538.1	RP11-16E18.4	RP11-16E18.4-001	YTHDF3	NA	chr8:64081121-64091001	inter
CUST_9596_PI429285431	5.1881456	P	5.2504435	P	0.957737435993782	0	lncRNA	11111-1_{1..392}	lnc-ARID1B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARID1B-2:2	chr6	156636284	156636675	+	lnc-ARID1B-2	lnc-ARID1B-2:2	XLOC_005514	linc-ARID1B-2	NA	NA	NA	inter
CUST_23196_PI429285431	4.2109985	P	4.751365	P	0.687596211010853	0	lncRNA	24768-1_{1..1035}	lnc-MYOM1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYOM1-1:2	chr18	  3261270	  3262304	-	lnc-MYOM1-1	lnc-MYOM1-1:2	ENSG00000264235.1	RP13-270P17.1	MYL12B	"hg19_refFlat_MYL12B:range=chr18:3272897-32779355'pad=0,hg19_refFlat_MYL12B:range=chr18:3272897-32779355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MYL12A:range=chr18:3253246-32559165'pad=0,hg19_refFlat_MYL12A:range=chr18:3253246-32559165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00chr18:3262111-3271820"	NA	inter
LNCA_21_P0013736	0.92503166	A	0.9084725	A	1.0115440593109	0	lncRNA	DQ673922	NA	DQ673922	NA	NA	NAMA	"non-protein coding RNA, associated with MAP kinase pathway and growth arrest"	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015315), lincRNA [TCONS_l2_00030031]"	chr9:102117787-102117728	hs|9q22.33	Agilent_HUMAN_G3V2	DQ673922	DQ673922	chr9	102117728	102117787	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21895_PI429285431	6.016369	P	5.846561	P	1.12490876707717	0	lncRNA	23504-1_{1..390}	lnc-SSBP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SSBP3-1:1	chr1	 54690898	 54691287	-	lnc-SSBP3-1	lnc-SSBP3-1:1	ENSG00000231581.1	RP5-997D24.5	SSBP3	NA	chr1:54692195-54701156	inter
CUST_9122_PI429285431	0.9040587	A	0.896744	A	1.00508303871183	0	lncRNA	10641-1_{1..2425}	lnc-OTX2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OTX2-2:1	chr14	 57395598	 57398022	-	lnc-OTX2-2	lnc-OTX2-2:1	ENSG00000248550	ENST00000534909	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40"	NA	inter
CUST_14459_PI429285431	8.519552	P	8.640555	P	0.919548134003079	0	lncRNA	16122-1_{1..632}	lnc-DIRAS2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DIRAS2-1:4	chr9	 93269540	 93270171	-	lnc-DIRAS2-1	lnc-DIRAS2-1:4	XLOC_007770	linc-SEMA4D-4	NA	NA	NA	inter
CUST_24118_PI429285431	12.72591	P	12.954578	P	0.853422469245885	0	lncRNA	25668-1_{1..541}	lnc-CTD-2021H9.3.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2021H9.3.1-2:1	chr12	 71425757	 71426297	-	lnc-CTD-2021H9.3.1-2	lnc-CTD-2021H9.3.1-2:1	ENSG00000257265.1	CTD-2021H9.1	NA	NA	NA	inter
CUST_5877_PI429285431	6.42006	P	6.316647	P	1.07431197066166	0	lncRNA	5807-1_{1..560}	"transcript_id ""ENST00000580347.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580347.1"" | genecode_v17"	chr17	 43810719	 43811278	-	ENSG00000265964.1	ENST00000580347.1	RP11-293E1.1	RP11-293E1.1-001	CRHR1	NA	chr17:43800719-43822035	inner
CUST_49608_PI429285431	1.4899101	A	1.5734446	A	0.943742709808952	0	lncRNA	53398-1_{1..527}	hg19_lincRNAsTranscripts_TCONS_l2_00025055 range=chr6:170483760-170484740 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025055 range=chr6:170483760-170484740 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	170483760	170484286	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10328_PI429285431	0.8988218	A	0.89187896	A	1.00482400821365	0	lncRNA	11856-1_{1..665}	lnc-RGS18-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGS18-5:4	chr1	190462968	190463632	+	lnc-RGS18-5	lnc-RGS18-5:4	XLOC_000505	linc-RGS18-3	NA	NA	NA	inter
CUST_4718_PI429285431	5.8448257	P	5.864035	P	0.986773378657573	0	lncRNA	4664-1_{1..412}	"transcript_id ""ENST00000548271.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548271.1"" | genecode_v17"	chr14	 19653908	 19654319	+	ENSG00000225210.5	ENST00000548271.1	AL589743.1	AL589743.1-014	NA	NA	NA	inter
CUST_3057_PI429285431	0.9313475	A	0.92209	A	1.00643744185605	0	lncRNA	3036-1_{1..328}	"transcript_id ""ENST00000520391.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520391.1"" | genecode_v17"	chr8	 31354939	 31355266	+	ENSG00000253275.1	ENST00000520391.1	RP11-566H8.1	RP11-566H8.1-001	NA	NA	NA	inter
CUST_29568_PI429285431	1.0666791	A	0.930391	A	1.09907367595376	0	lncRNA	31328-1_{1..327}	n333065|AF260226|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075265|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075265|1.3249100|-0.1706260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333065|AF260226|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075265|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075265|1.3249100|-0.1706260	chr16	 23315294	 23315620	+	NA	NA	NA	NA	SCNN1B	NA	chr16:23313591-23370088	inner
CUST_4226_PI429285431	1.3073558	A	0.9222968	A	1.30591319220968	0	lncRNA	4185-1_{1..342}	"transcript_id ""ENST00000549364.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549364.1"" | genecode_v17"	chr12	 38938130	 38938471	-	ENSG00000258119.1	ENST00000549364.1	RP11-804F13.1	RP11-804F13.1-002	NA	NA	NA	inter
CUST_3479_PI429285431	4.792796	P	4.5516596	P	1.18192328691474	0	lncRNA	3450-1_{1..302}	"transcript_id ""ENST00000437389.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437389.1"" | genecode_v17"	chr9	 93932951	 93933252	+	ENSG00000229694.2	ENST00000437389.1	RP11-305L7.6	RP11-305L7.6-003	NA	NA	NA	inter
LNCA_19_P00315798	3.7160833	P	3.7745774	P	0.960265931891242	0	lncRNA	XR_109498	XR_109498	XR_109498	NA	Hs.721209	LOC100506374	uncharacterized LOC100506374	NA	THC2616041	NA	"PREDICTED: Homo sapiens hypothetical LOC100506374 (LOC100506374), miscRNA [XR_109498]"	chr19:56813387-56813446	hs|19q13.43	Agilent_HUMAN_G3V2	XR_109498	XR_109498	chr19	 56813387	 56813446	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2505_PI429285431	1.0168769	A	0.9335941	A	1.05942598515565	0	lncRNA	2497-1_{1..536}	"transcript_id ""ENST00000539514.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539514.1"" | genecode_v17"	chr6	 31261685	 31262220	-	ENSG00000256166.1	ENST00000539514.1	XXbac-BPG248L24.13	XXbac-BPG248L24.13-001	NA	NA	NA	inter
LNCA_21_P0014070	3.566681	P	4.2673974	P	0.615266607469806	0	lncRNA	ENST00000444037	XR_108336	XR_108336	NA	Hs.657705	LOC100506855	NA	ENST00000444037	THC2512642	NA	"PREDICTED: Homo sapiens hypothetical LOC100506855 (LOC100506855), miscRNA [XR_108336]"	chr1:204598387-204598446	hs|1q32.1	Agilent_HUMAN_G3V2	ENST00000444037	ENST00000444037	chr1	204598387	204598446	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4961_PI429285431	3.5228422	P	4.108002	P	0.666575501274677	0	lncRNA	4905-1_{1..715}	"transcript_id ""ENST00000556346.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556346.1"" | genecode_v17"	chr14	 96039899	 96040613	+	ENSG00000258390.1	ENST00000556346.1	RP11-1070N10.4	RP11-1070N10.4-002	NA	NA	NA	inter
CUST_19790_PI429285431	6.778035	P	7.303443	P	0.694762600458675	0	lncRNA	21448-1_{1..664}	lnc-SCN1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SCN1B-1:1	chr19	 35501188	 35501851	+	lnc-SCN1B-1	lnc-SCN1B-1:1	ENSG00000253950.2	AC020907.6	GRAMD1A	NA	chr19:35491246-35511430	inner
CUST_45900_PI429285431	1.0999309	A	1.4340582	A	0.793263844376504	0	lncRNA	50211-1_{1..2602}	"gi|373838703|ref|NR_046085.1| Homo sapiens uncharacterized LOC100132078 (LOC100132078), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|373838703|ref|NR_046085.1| Homo sapiens uncharacterized LOC100132078 (LOC100132078), non-coding RNA"	Chr11	111284967	111287568	-	100132078	NR_046085.1	NA	NA	NA	NA	NA	inter
CUST_19224_PI429285431	3.0579994	A	2.9069495	A	1.11037723874159	0	lncRNA	20894-1_{1..579}	lnc-CYP7B1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYP7B1-6:1	chr8	 65280898	 65281476	-	lnc-CYP7B1-6	lnc-CYP7B1-6:1	ENSG00000253554.1	RP11-32K4.1	NA	NA	NA	inter
CUST_367_PI429201921	3.7157316	P	4.4665484	P	0.594267010474282	0	lncRNA	234-3_{6001..8947}	TC16001513.hg.1	TCONS_l2_00009694-XLOC_l2_005191 // Broad TUCP // linc-TP53TG3B-15 chr16:+:32941724-32950672 // chr16 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr16:+:32941724-32950672	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00009694-XLOC_l2_005191	linc-TP53TG3B-15	chr16	 32941724	 32950672	+	NA	NA	NA	NA	DAB1	NA	chr1:58515811-58555946	Unknown
CUST_34217_PI429285431	1.3082088	A	0.9197352	A	1.30900771478991	0	lncRNA	35730-1_{1..1654}	n341078|BC039514|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3544|NULL|-0.1862850|-0.3360772	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341078|BC039514|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3544|NULL|-0.1862850|-0.3360772	chr11	 78135027	 78136680	-	NA	NA	NA	NA	NARS2	NA	chr11:78147016-78150882	inter
CUST_7698_PI429285431	5.631936	P	5.7105536	P	0.946964599920611	0	lncRNA	9331-1_{1..382}	lnc-TRIML1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIML1-3:1	chr4	189406933	189407314	+	lnc-TRIML1-3	lnc-TRIML1-3:1	ENSG00000249378	XLOC_003834	NA	NA	NA	inter
CUST_49979_PI429285431	10.010958	P	9.706537	P	1.23492292330531	0	lncRNA	53720-2_{3001..3502}	hg19_lincRNAsTranscripts_TCONS_l2_00026266 range=chr7:149731355-149738749 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026266 range=chr7:149731355-149738749 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	149734355	149734856	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48906_PI429285431	2.20119	A	2.9050758	A	0.613916436068033	0	lncRNA	52748-1_{1..453}	hg19_lincRNAsTranscripts_TCONS_l2_00019487 range=chr3:125581816-125592714 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019487 range=chr3:125581816-125592714 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	125581816	125582268	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6541_PI429285431	6.5939965	P	7.4626436	P	0.547660183069094	0	lncRNA	6484-1_{1..612}	"transcript_id ""ENST00000599127.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599127.1"" | genecode_v17"	chr19	 46667150	 46667761	-	ENSG00000269729.1	ENST00000599127.1	AC006262.4	AC006262.4-001	IGFL2	NA	chr19:46657150-46664561	inter
CUST_14089_PI429285431	0.8940266	A	0.89551866	A	0.998966317436044	0	lncRNA	15734-1_{1..728}	lnc-EFNA5-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFNA5-3:1	chr5	105540921	105541648	-	lnc-EFNA5-3	lnc-EFNA5-3:1	XLOC_004950	linc-NUDT12-1	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
CUST_5029_PI429285431	2.407768	A	2.6066785	A	0.871208237326085	0	lncRNA	4969-1_{1..425}	"transcript_id ""ENST00000553692.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553692.1"" | genecode_v17"	chr14	101511494	101511918	+	ENSG00000258861.1	ENST00000553692.1	MIR381HG	MIR381HG-001	NA	NA	NA	inter
CUST_6781_PI429285431	5.4606705	P	5.86825	P	0.753887157034973	0	lncRNA	6728-1_{1..581}	"transcript_id ""ENST00000602921.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602921.1"" | genecode_v17"	chr21	 17664112	 17664692	-	ENSG00000270071.1	ENST00000602921.1	AP001172.2	AP001172.2-001	NA	NA	NA	inter
CUST_18294_PI429285431	3.1378644	P	2.4762313	A	1.58187225626057	0	lncRNA	20024-1_{1..2128}	lnc-AL592284.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL592284.1-1:2	chr1	144621447	144623574	+	lnc-AL592284.1-1	lnc-AL592284.1-1:2	ENSG00000225241	NBPF8	NBPF9	NA	chr1:144614959-144621685	inner
CUST_15088_PI429285431	10.380861	P	10.656258	P	0.826222927314251	0	lncRNA	16751-1_{1..2279}	lnc-OSGIN1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OSGIN1-1:4	chr16	 83965850	 83968128	+	lnc-OSGIN1-1	lnc-OSGIN1-1:4	XLOC_011803	linc-OSGIN1	NA	NA	NA	inter
CUST_15262_PI429285431	0.92261326	A	0.920912	A	1.0011799191299	0	lncRNA	16935-1_{1..1445}	lnc-C5orf17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf17-1:1	chr5	 24320728	 24322172	+	lnc-C5orf17-1	lnc-C5orf17-1:1	XLOC_004316	linc-CDH6-11	NA	NA	NA	inter
CUST_14904_PI429285431	5.3557	P	5.3874245	P	0.978250264285955	0	lncRNA	16567-1_{1..434}	lnc-AQP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AQP1-1:1	chr7	 31024700	 31025133	+	lnc-AQP1-1	lnc-AQP1-1:1	XLOC_006038	linc-ADCYAP1R1	GHRHR	NA	chr7:31014700-31019146	inter
LNCA_19_P00801752	4.382353	P	4.000807	P	1.30273712804255	0	lncRNA	THC2718861	NA	NA	NA	NA	XLOC_014103	NA	NA	THC2718861	NA	"BROAD Institute lincRNA (XLOC_014103), lincRNA [TCONS_00029159]"	chr21:044808883-044808824	hs|21q22.3	Agilent_HUMAN_G3V2	THC2718861	THC2718861	chr21	 44808824	 44808883	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51281_PI429285431	5.7162127	P	6.0966473	P	0.76820614001121	0	lncRNA	54887-1_{1..1383}	hg19_lincRNAsTranscripts_TCONS_l2_00008527 range=chr15:30804859-30808898 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008527 range=chr15:30804859-30808898 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 30804859	 30806241	+	NA	NA	NA	NA	NA	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40"	NA	inter
CUST_7804_PI429285431	3.3089218	P	3.7357092	P	0.743916498974676	0	lncRNA	9428-1_{1..1974}	lnc-PHKB-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHKB-5:1	chr16	 48392349	 48394322	+	lnc-PHKB-5	lnc-PHKB-5:1	ENSG00000248379	ENST00000504200	LONP2	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40chr16:48382349-48387407"	NA	inter
CUST_3953_PI429285431	8.847932	P	9.253626	P	0.754873078154095	0	lncRNA	3923-1_{1..516}	"transcript_id ""ENST00000532845.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532845.1"" | genecode_v17"	chr11	 58903398	 58903913	-	ENSG00000245571.2	ENST00000532845.1	AP001258.4	AP001258.4-003	FAM111B	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90chr11:58893398-58894888"	NA	inter
CUST_6484_PI429285431	3.2487423	P	2.5173903	A	1.66019418890853	0	lncRNA	6426-1_{1..844}	"transcript_id ""ENST00000564335.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564335.1"" | genecode_v17"	chr19	 36282005	 36282848	-	ENSG00000225872.2	ENST00000564335.1	AC002398.5	AC002398.5-002	ARHGAP33	NA	chr19:36272005-36279724	inter
CUST_4796_PI429285431	1.5901204	A	1.8571305	A	0.831040043639345	0	lncRNA	4740-1_{1..531}	"transcript_id ""ENST00000554711.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554711.1"" | genecode_v17"	chr14	 46175461	 46175991	-	ENSG00000258616.1	ENST00000554711.1	RP11-369C8.1	RP11-369C8.1-005	NA	NA	NA	inter
CUST_49006_PI429285431	7.3841796	P	7.6542854	P	0.82925872991901	0	lncRNA	52837-1_{1..838}	hg19_lincRNAsTranscripts_TCONS_l2_00020328 range=chr3:197346611-197354717 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020328 range=chr3:197346611-197354717 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	197346611	197347448	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22810_PI429285431	1.188766	A	1.1860793	A	1.0018640136476	0	lncRNA	24390-1_{1..576}	lnc-ABHD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ABHD3-1:1	chr18	 19411283	 19411858	-	lnc-ABHD3-1	lnc-ABHD3-1:1	ENSG00000265142.1	hsa-mir-133a-1	MIB1	NA	chr18:19401283-19421371	inner
CUST_47339_PI429285431	5.479401	P	5.479072	P	1.00022807142674	0	lncRNA	51392-1_{1..2499}	"gi|388890227|ref|NR_051958.1| Homo sapiens ADP-ribosylation factor related protein 1 (ARFRP1), transcript variant 13, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388890227|ref|NR_051958.1| Homo sapiens ADP-ribosylation factor related protein 1 (ARFRP1), transcript variant 13, non-coding RNA"	Chr20	 62329995	 62332493	-	10139	NR_051958.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014439	0.97914994	A	0.9304581	A	1.03432662551118	0	lncRNA	ENST00000512502	XR_109814	XR_109814	NA	NA	LOC100506297	NA	ENST00000512502	THC2674386	NA	"PREDICTED: Homo sapiens hypothetical LOC100506297 (LOC100506297), miscRNA [XR_109814]"	chr4:82114290-82114349	hs|4q21.21	Agilent_HUMAN_G3V2	ENST00000512502	ENST00000512502	chr4	 82114290	 82114349	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34192_PI429285431	12.742007	P	12.590611	P	1.11064364824031	0	lncRNA	35707-1_{1..771}	n341043|CR596896|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3509|NULL|3.5047800|-0.1756338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341043|CR596896|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3509|NULL|3.5047800|-0.1756338	chr11	 62529071	 62529841	+	NA	NA	NA	NA	ZBTB3	NA	chr11:62519071-62521656	inner
CUST_239_PI429201921	8.653598	P	8.829122	P	0.885445858677445	0	lncRNA	182-3_{6001..6144}	TC22000970.hg.1	TCONS_00029362-XLOC_014156 // Rinn lincRNAs // linc-ZNF74-3 chr22:+:20186295-20192440 // chr22 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr22:+:20186295-20192440	NA	Affy_HUMAN_HTA2.0	TCONS_00029362-XLOC_014156	linc-ZNF74-3	chr22	 20186295	 20192440	+	NA	NA	NA	NA	ATPIF1	NA	chr1:28563655-28564616	Unknown
CUST_28145_PI429285431	4.1094337	P	4.3446374	P	0.849565037115493	0	lncRNA	29771-1_{1..346}	n325422|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323610|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323610|-0.8089090|-0.4310864	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325422|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323610|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323610|-0.8089090|-0.4310864	chr2	 14674002	 14674347	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32993_PI429285431	0.9293695	A	0.91891414	A	1.00727342711092	0	lncRNA	34608-1_{1..1496}	n339674|BC035080|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2118|NULL|-1.1136100|-0.2924395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339674|BC035080|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2118|NULL|-1.1136100|-0.2924395	chr20	 39726968	 39728463	-	NA	NA	NA	NA	TOP1	"hg19_refFlat_TOP1:range=chr20:39657708-397519375'pad=0,hg19_refFlat_TOP1:range=chr20:39657708-397519375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PLCG1:range=chr20:39766282-398031495'pad=0,hg19_refFlat_PLCG1:range=chr20:39766282-398031495'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20chr20:39716968-39753127"	NA	inner
CUST_32765_PI429285431	3.2141511	P	3.9760072	P	0.589737115864798	0	lncRNA	34402-1_{1..3000}	n339403|BC040985|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1835|NULL|-1.2086100|-0.3711623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339403|BC040985|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1835|NULL|-1.2086100|-0.3711623	chr3	 86119659	 86122658	+	NA	NA	NA	NA	CADM2	NA	chr3:86109659-86123579	inner
CUST_47001_PI429285431	2.5126684	A	3.4205222	A	0.532977376221516	0	lncRNA	51100-1_{1..885}	"gi|224586911|ref|NR_027245.1| Homo sapiens long intergenic non-protein coding RNA 305 (LINC00305), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224586911|ref|NR_027245.1| Homo sapiens long intergenic non-protein coding RNA 305 (LINC00305), non-coding RNA"	Chr18	 61747243	 61748127	-	221241	NR_027245.1	NA	NA	NA	NA	NA	inter
CUST_30139_PI429285431	9.35219	P	9.938847	P	0.665884101400989	0	lncRNA	31913-1_{1..213}	n334787|AJ227913|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245062|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245062|-1.2482000|-0.5958696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334787|AJ227913|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245062|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245062|-1.2482000|-0.5958696	chr4	 74608855	 74609067	+	NA	NA	NA	NA	IL8	NA	chr4:74606223-74609433	inner
CUST_4907_PI429285431	2.335031	A	2.445838	A	0.92606990147009	0	lncRNA	4849-1_{1..424}	"transcript_id ""ENST00000555512.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555512.1"" | genecode_v17"	chr14	 77537006	 77537429	-	ENSG00000258819.1	ENST00000555512.1	RP11-7F17.3	RP11-7F17.3-002	NA	NA	NA	inter
CUST_34218_PI429285431	1.8796332	A	1.7539929	A	1.0909918315595	0	lncRNA	35731-1_{1..1576}	n341079|CR590856|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3545|NULL|-1.0848600|-0.2870953	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341079|CR590856|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3545|NULL|-1.0848600|-0.2870953	chr11	 79059321	 79060896	-	NA	NA	NA	NA	ODZ4	NA	chr11:79049321-79070897	inner
CUST_8469_PI429285431	1.457336	A	1.9694519	A	0.701193292163658	0	lncRNA	10035-1_{1..2121}	lnc-RPLP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPLP1-2:1	chr15	 69903294	 69905414	+	lnc-RPLP1-2	lnc-RPLP1-2:1	ENSG00000248263	XLOC_011295	NA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10"	NA	inter
CUST_920_PI429285431	1.5317312	A	1.208107	A	1.25147042728085	0	lncRNA	910-1_{1..567}	"transcript_id ""ENST00000427579.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427579.1"" | genecode_v17"	chr2	 67267678	 67268244	+	ENSG00000223859.1	ENST00000427579.1	AC007403.3	AC007403.3-001	NA	NA	NA	inter
CUST_28010_PI429285431	2.828275	A	2.6210604	A	1.15445712953346	0	lncRNA	29620-1_{1..571}	n325266|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328267|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328267|-1.1840500|-0.3898051	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325266|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328267|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328267|-1.1840500|-0.3898051	chr2	 67256058	 67256628	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10630_PI429285431	1.4944123	A	1.6737273	A	0.883122208323744	0	lncRNA	12161-1_{1..459}	lnc-CHST1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHST1-4:2	chr11	 45773062	 45773520	-	lnc-CHST1-4	lnc-CHST1-4:2	XLOC_009434	linc-CHST1-1	NA	NA	NA	inter
CUST_3850_PI429285431	5.5105267	P	5.3656406	P	1.10564335992394	0	lncRNA	3819-1_{1..450}	"transcript_id ""ENST00000534291.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534291.1"" | genecode_v17"	chr11	  3490549	  3490998	+	ENSG00000254757.1	ENST00000534291.1	RP13-726E6.1	RP13-726E6.1-001	NA	NA	NA	inter
LNCA_19_P00800264	7.2661786	P	7.1264505	P	1.10169746300388	0	lncRNA	ENST00000522817	XR_108865	XR_108865	NA	NA	LOC100506365	NA	ENST00000522817	THC2663356	NA	"PREDICTED: Homo sapiens hypothetical LOC100506365, transcript variant 2 (LOC100506365), miscRNA [XR_108865]"	chr8:92075826-92075767	hs|8q21.3	Agilent_HUMAN_G3V2	ENST00000522817	ENST00000522817	chr8	 92075767	 92075826	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17226_PI429285431	3.0817518	A	2.841819	A	1.18093765267419	0	lncRNA	18942-1_{1..715}	lnc-SORBS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SORBS2-1:1	chr4	186499526	186500240	-	lnc-SORBS2-1	lnc-SORBS2-1:1	XLOC_004211	linc-PDLIM3	SORBS2	NA	chr4:186506598-186509648	inter
LNCA_19_P00318170	3.4554975	P	3.229969	P	1.16920548315861	0	lncRNA	TCONS_00012548	NA	NA	NA	NA	XLOC_005397	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005397), lincRNA [TCONS_00012548]"	chr6:98275926-98275985	hs|6q16.1	Agilent_HUMAN_G3V2	TCONS_00012548	TCONS_00012548	chr6	 98275926	 98275985	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007928	4.817962	P	4.6083894	P	1.15634556450589	0	lncRNA	ENST00000431171	NA	NA	NA	NA	XLOC_010324	NA	ENST00000431171	THC2656732	NA	"BROAD Institute lincRNA (XLOC_010324), lincRNA [TCONS_00021533]"	chr13:27948259-27948318	hs|13q12.2	Agilent_HUMAN_G3V2	ENST00000431171	ENST00000431171	chr13	 27948259	 27948318	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23446_PI429285431	1.1725363	A	0.93528575	A	1.17874410019805	0	lncRNA	25013-1_{1..218}	lnc-SMC1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMC1A-1:1	chrX	 53459879	 53460096	-	lnc-SMC1A-1	lnc-SMC1A-1:1	ENSG00000233250.1	RP3-339A18.6	HSD17B10	NA	chrX:53458206-53461323	inner
CUST_11187_PI429285431	1.5279742	A	0.9248274	A	1.5190262489571	0	lncRNA	12744-1_{1..614}	lnc-HRH4-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HRH4-7:1	chr18	 22519938	 22520551	+	lnc-HRH4-7	lnc-HRH4-7:1	XLOC_012645	linc-PSMA8-2	NA	NA	NA	inter
CUST_27684_PI429285431	1.0188651	A	0.92144555	A	1.06985816799689	0	lncRNA	29262-1_{1..784}	n324891|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158283|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158283|-0.1156750|-0.2958547	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324891|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158283|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158283|-0.1156750|-0.2958547	chr21	 19212122	 19212905	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43210_PI429285431	5.141294	P	4.9066114	P	1.17664784043228	0	lncRNA	48024-1_{1..611}	ENST00000602669 havana:sense_intronic chromosome:GRCh37:14:104160897:104161507:1 gene:ENSG00000269940 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602669 havana:sense_intronic chromosome:GRCh37:14:104160897:104161507:1 gene:ENSG00000269940 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr14	104160897	104161507	+	ENSG00000269940	ENST00000602669	NA	NA	KLC1	NA	chr14:104150897-104167888	inner
CUST_40160_PI429285431	0.92710304	A	0.92251354	A	1.00318626436858	0	lncRNA	40996-2_{3001..5339}	n407852|NR_027407|lncRNA|Homosapiens||RefGeneNoncode|NR_027407||10.9225000|-0.2972026	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407852|NR_027407|lncRNA|Homosapiens||RefGeneNoncode|NR_027407||10.9225000|-0.2972026	chr15	 22705284	 22707622	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39782_PI429285431	0.92743397	A	0.9112562	A	1.01127668347029	0	lncRNA	40696-1_{1..2398}	n406117|NR_003505|lncRNA|Homosapiens||RefGeneNoncode|NR_003505||12.4744000|-0.1507990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406117|NR_003505|lncRNA|Homosapiens||RefGeneNoncode|NR_003505||12.4744000|-0.1507990	chr20	 56807832	 56810229	-	NA	NA	NA	NA	RAB22A	NA	chr20:56884771-56894495	inter
CUST_11875_PI429285431	5.6343946	P	5.5770802	P	1.04052699915473	0	lncRNA	13456-1_{1..889}	lnc-ALG10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ALG10-1:1	chr12	 34209496	 34210384	+	lnc-ALG10-1	lnc-ALG10-1:1	XLOC_009707	linc-ALG10B	NA	NA	NA	inter
CUST_37071_PI429285431	7.1554856	P	6.8332176	P	1.25029454003419	0	lncRNA	38200-1_{1..3000}	n345517|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1066|NULL|-1.3011500|-0.3637381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345517|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1066|NULL|-1.3011500|-0.3637381	chr2	 37066145	 37069144	-	NA	NA	NA	NA	STRN	NA	chr2:37064841-37083286	inner
CUST_48588_PI429285431	0.91768837	A	0.9094658	A	1.00571572398512	0	lncRNA	52434-2_{3001..5837}	hg19_lincRNAsTranscripts_TCONS_l2_00014464 range=chr2:20786003-20793177 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014464 range=chr2:20786003-20793177 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 20789003	 20791839	-	NA	NA	NA	NA	HS1BP3	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80chr2:20776003-20803177"	NA	inter
CUST_1277_PI429285431	4.777664	P	5.2420216	P	0.724793739959719	0	lncRNA	1268-1_{1..348}	"transcript_id ""ENST00000446029.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446029.1"" | genecode_v17"	chr2	240547392	240547739	+	ENSG00000227459.1	ENST00000446029.1	AC079612.2	AC079612.2-001	NA	NA	NA	inter
CUST_24380_PI429285431	2.3929894	A	2.3224306	A	1.05012334981473	0	lncRNA	25933-1_{1..469}	lnc-RPS18-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS18-2:4	chr6	 33219377	 33219845	+	lnc-RPS18-2	lnc-RPS18-2:4	ENSG00000232940.1	HCG25	VPS52	"hg19_refFlat_VPS52:range=chr6_mcf_hap5:4692408-47132225'pad=0,hg19_refFlat_VPS52:range=chr6_mcf_hap5:4692408-47132225'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_VPS52:range=chr6_mann_hap4:4675922-46770555'pad=0,hg19_refFlat_VPS52:range=chr6_mann_hap4:4675922-46770555'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_VPS52:range=chr6_qbl_hap6:4450837-44716885'pad=0,hg19_refFlat_VPS52:range=chr6_qbl_hap6:4450837-44716885'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_VPS52:range=chr6_dbb_hap3:4499938-45207745'pad=0,hg19_refFlat_VPS52:range=chr6_dbb_hap3:4499938-45207745'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_VPS52:range=chr6_ssto_hap7:4698843-47196545'pad=0,hg19_refFlat_VPS52:range=chr6_ssto_hap7:4698843-47196545'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_VPS52:range=chr6_cox_hap2:4662444-46832625'pad=0,hg19_refFlat_VPS52:range=chr6_cox_hap2:4662444-46832625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_VPS52:range=chr6:33218618-332394525'pad=0,hg19_refFlat_VPS52:range=chr6:33218618-332394525'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr6:33218049-33229412"	NA	inner
CUST_40876_PI429285431	5.580327	P	6.276448	P	0.617229533735576	0	lncRNA	41570-1_{1..3000}	n410678|NR_037928|lncRNA|Homosapiens||RefGeneNoncode|NR_037928||4.9714000|-0.1915328	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410678|NR_037928|lncRNA|Homosapiens||RefGeneNoncode|NR_037928||4.9714000|-0.1915328	chr17	  3566186	  3569185	-	NA	NA	NA	NA	CTNS	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_EMC6:range=chr17:3572441-35727735'pad=0,hg19_refFlat_EMC6:range=chr17:3572441-35727735'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80chr17:3556186-3566397"	NA	inner
CUST_32363_PI429285431	2.1241708	A	1.3277547	A	1.73678130290259	0	lncRNA	34041-1_{1..2245}	n338946|BC037838|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1374|NULL|-1.2399400|-0.4002753	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338946|BC037838|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1374|NULL|-1.2399400|-0.4002753	chr2	120740286	120742530	+	NA	NA	NA	NA	PTPN4	NA	chr2:120730286-120735037	inner
CUST_34777_PI429285431	2.3281271	A	1.7487556	A	1.49419816984851	0	lncRNA	36214-3_{6001..6814}	n341684|AL832569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4155|NULL|1.3840500|-0.2047240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341684|AL832569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4155|NULL|1.3840500|-0.2047240	chr9	 35864734	 35865547	+	NA	NA	NA	NA	TMEM8B	"hg19_refFlat_OR1N2:range=chr9:125315449-1253164415'pad=0,hg19_refFlat_OR1N2:range=chr9:125315449-1253164415'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70chr9:35848734-35854844"	NA	inter
LNCA_21_P0011305	7.1739597	P	7.7489014	P	0.671313378938303	0	lncRNA	XR_109206	XR_109206	XR_109206	NA	Hs.525720	LOC100130111	uncharacterized LOC100130111	NA	THC2620931	NA	"PREDICTED: Homo sapiens hypothetical LOC100130111 (LOC100130111), miscRNA [XR_109206]"	chr15:29969555-29969614	hs|15q13.1	Agilent_HUMAN_G3V2	XR_109206	XR_109206	chr15	 29969555	 29969614	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5382_PI429285431	3.5632975	P	4.099454	P	0.689605650135767	0	lncRNA	5317-1_{1..3000}	"transcript_id ""ENST00000565467.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565467.1"" | genecode_v17"	chr16	  1025761	  1028760	-	ENSG00000260807.2	ENST00000565467.1	RP11-161M6.2	RP11-161M6.2-001	LMF1	NA	chr16:1015761-1031318	inter
CUST_14697_PI429285431	0.9132457	A	0.90264946	A	1.00737179274271	0	lncRNA	16361-1_{1..328}	lnc-KLF3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF3-1:1	chr4	 38740546	 38740873	+	lnc-KLF3-1	lnc-KLF3-1:1	XLOC_003513	linc-FAM114A1-2	NA	NA	NA	inter
LNCA_21_P0001452	0.9310477	A	1.6052363	A	0.62668457992026	0	lncRNA	TCONS_00001362	NA	NA	NA	NA	XLOC_000647	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000647), lincRNA [TCONS_00001362]"	chr1:247556798-247556857	hs|1q44	Agilent_HUMAN_G3V2	TCONS_00001362	TCONS_00001362	chr1	247556798	247556857	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002795	0.9359561	A	1.6184487	A	0.623087811030126	0	lncRNA	ENST00000490897	NA	BC043538	NA	Hs.390443	XLOC_002909	NA	ENST00000490897	THC2688957	NA	"BROAD Institute lincRNA (XLOC_002909), lincRNA [TCONS_00005648]"	chr3:167623713-167630605	hs|3q26.2	Agilent_HUMAN_G3V2	ENST00000490897	ENST00000490897	chr3	167623713	167630605	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2963_PI429285431	1.3967546	A	2.101901	A	0.613380241636906	0	lncRNA	2943-1_{1..3000}	"transcript_id ""ENST00000330148.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000330148.2"" | genecode_v17"	chr8	   325931	   328930	-	ENSG00000182366.4	ENST00000330148.2	FAM87A	FAM87A-001	NA	NA	NA	inter
CUST_15572_PI429285431	1.4280971	A	1.5600488	A	0.91259604084292	0	lncRNA	17256-1_{1..2393}	lnc-PPP1R3D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PPP1R3D-1:1	chr20	 58660392	 58662784	-	lnc-PPP1R3D-1	lnc-PPP1R3D-1:1	XLOC_013825	linc-PPP1R3D-1	NA	NA	NA	inter
CUST_820_PI429285431	1.6837002	A	1.9235476	A	0.846834880958084	0	lncRNA	813-1_{1..2952}	"transcript_id ""ENST00000421976.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421976.2"" | genecode_v17"	chr2	 30569525	 30572476	+	ENSG00000235997.2	ENST00000421976.2	AC109642.1	AC109642.1-002	NA	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50"	NA	inter
CUST_18645_PI429285431	2.9233882	P	2.9033976	A	1.0139528732739	0	lncRNA	20349-1_{1..524}	lnc-HSCB-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HSCB-1:13	chr22	 28389112	 28389635	+	lnc-HSCB-1	lnc-HSCB-1:13	ENSG00000235954	TTC28-AS1	TTC28	"hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0,hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0 3'pad=0 strand=- repeatMasking=none,-101.50chr22:28379112-28399493"	NA	inner
CUST_45447_PI429285431	7.5985103	P	7.8042083	P	0.867119058939301	0	lncRNA	49864-1_{1..2627}	"gi|341916035|ref|XR_132816.1| PREDICTED: Homo sapiens DBH antisense RNA 1 (DBH-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341916035|ref|XR_132816.1| PREDICTED: Homo sapiens DBH antisense RNA 1 (DBH-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_132816.1	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_DBH:range=chr9:136501494-1365235695'pad=0,hg19_refFlat_DBH:range=chr9:136501494-1365235695'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	Unknown
CUST_21868_PI429285431	3.7955992	P	4.353655	P	0.679216871279356	0	lncRNA	23478-1_{1..1980}	lnc-C15orf32-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C15orf32-1:2	chr15	 93141788	 93143767	+	lnc-C15orf32-1	lnc-C15orf32-1:2	ENSG00000258676.2	RP11-386M24.3	NA	NA	NA	inter
CUST_16132_PI429285431	1.0622447	A	1.1322134	A	0.952658666232258	0	lncRNA	17838-1_{1..777}	lnc-P2RY1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-P2RY1-3:3	chr3	152396200	152396976	+	lnc-P2RY1-3	lnc-P2RY1-3:3	XLOC_002878	linc-P2RY1-2	NA	NA	NA	inter
CUST_48628_PI429285431	2.1256053	A	3.0474365	A	0.527838614036325	0	lncRNA	52475-1_{1..1208}	hg19_lincRNAsTranscripts_TCONS_l2_00013759 range=chr2:89082141-89101200 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013759 range=chr2:89082141-89101200 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 89082141	 89083348	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5645_PI429285431	2.2434466	A	0.9117103	A	2.51705423045959	0	lncRNA	5573-1_{1..3000}	"transcript_id ""ENST00000570137.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000570137.1"" | genecode_v17"	chr16	 80631803	 80634802	-	ENSG00000261128.1	ENST00000570137.1	RP11-18F14.2	RP11-18F14.2-001	CDYL2	NA	chr16:80637675-80646416	inter
CUST_12114_PI429285431	9.131669	P	8.757105	P	1.29644769316976	0	lncRNA	13711-1_{1..495}	lnc-PAX4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAX4-1:1	chr7	127291727	127292221	-	lnc-PAX4-1	lnc-PAX4-1:1	XLOC_006596	linc-PAX4	SND1	NA	chr7:127292202-127302066	inter
CUST_28964_PI429285431	1.9603614	A	0.91817313	A	2.05934889193318	0	lncRNA	30685-1_{1..480}	n326395|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000100086|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000100086|-0.7194400|-0.2084497	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326395|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000100086|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000100086|-0.7194400|-0.2084497	chr1	145716323	145716802	+	NA	NA	NA	NA	PDZK1	NA	chr1:145727666-145737689	inner
CUST_49757_PI429285431	14.399912	P	15.018947	P	0.651106298655576	0	lncRNA	53525-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00025849 range=chr7:45831388-45863181 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025849 range=chr7:45831388-45863181 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 45834388	 45837387	+	NA	NA	NA	NA	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-60.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_13819_PI429285431	1.8422318	A	1.1440635	A	1.62244356897959	0	lncRNA	15462-1_{1..332}	lnc-C7orf11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C7orf11-2:1	chr7	 39807001	 39807332	-	lnc-C7orf11-2	lnc-C7orf11-2:1	XLOC_006416	linc-VPS41-3	NA	NA	NA	inter
CUST_5950_PI429285431	0.9510732	A	1.2261695	A	0.826395154375855	0	lncRNA	5879-1_{1..565}	"transcript_id ""ENST00000587241.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587241.1"" | genecode_v17"	chr17	 67759818	 67760382	+	ENSG00000227517.2	ENST00000587241.1	AC003051.1	AC003051.1-004	NA	NA	NA	inter
CUST_20022_PI429285431	0.92703223	A	0.9079208	A	1.01333516450022	0	lncRNA	21675-1_{1..545}	lnc-ASB2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASB2-2:2	chr14	 94393261	 94393805	-	lnc-ASB2-2	lnc-ASB2-2:2	ENSG00000258584.1	FAM181A-AS1	FAM181A	NA	chr14:94385240-94395954	inner
CUST_50984_PI429285431	0.91960657	A	0.9222809	A	0.998148012749297	0	lncRNA	54627-1_{1..455}	hg19_lincRNAsTranscripts_TCONS_l2_00005933 range=chr12:120377250-120413039 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005933 range=chr12:120377250-120413039 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	120377250	120377704	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12259_PI429285431	0.91632944	A	0.9019074	A	1.01004672924683	0	lncRNA	13866-1_{1..520}	lnc-KRT80-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KRT80-2:2	chr12	 52488463	 52488982	-	lnc-KRT80-2	lnc-KRT80-2:2	XLOC_010079	linc-FIGNL2-2	NA	NA	NA	inter
CUST_45567_PI429285431	11.422306	P	12.044743	P	0.649572742386997	0	lncRNA	49965-1_{1..1646}	"gi|343403840|ref|NR_045000.1| Homo sapiens ARP3 actin-related protein 3 homolog B (yeast) pseudogene 5 (ACTR3BP5), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|343403840|ref|NR_045000.1| Homo sapiens ARP3 actin-related protein 3 homolog B (yeast) pseudogene 5 (ACTR3BP5), non-coding RNA"	Chr10	 38989727	 38991372	+	399746	NR_045000.1	NA	NA	NA	NA	NA	inter
CUST_17824_PI429285431	0.921152	A	1.1704886	A	0.84128317679724	0	lncRNA	19559-2_{3001..3435}	lnc-AL033381.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL033381.1-1:1	chr6	  1105041	  1105475	+	lnc-AL033381.1-1	lnc-AL033381.1-1:1	XLOC_005122	linc-FOXQ1-1	NA	NA	NA	inter
CUST_22653_PI429285431	3.2199614	P	3.3413827	P	0.919281555678485	0	lncRNA	24237-1_{1..303}	lnc-SLC25A28-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A28-1:1	chr10	101413582	101413884	-	lnc-SLC25A28-1	lnc-SLC25A28-1:1	ENSG00000229278.1	RP11-483F11.7	ENTPD7	NA	chr10:101419263-101423662	inter
CUST_50205_PI429285431	0.9029254	A	0.8928971	A	1.00697530275619	0	lncRNA	53930-1_{1..1376}	hg19_lincRNAsTranscripts_TCONS_l2_00029293 range=chr9:44067650-44078630 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029293 range=chr9:44067650-44078630 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 44067650	 44069025	-	NA	NA	NA	NA	LOC100653009	NA	chr9:44057650-44059514	inter
CUST_44728_PI429285431	5.121026	P	5.3599358	P	0.84738541341542	0	lncRNA	49282-1_{1..1335}	"gi|323362975|ref|NR_037860.1| Homo sapiens EGF-like-domain, multiple 8 (EGFL8), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|323362975|ref|NR_037860.1| Homo sapiens EGF-like-domain, multiple 8 (EGFL8), transcript variant 2, non-coding RNA"	NT_167249.1	  3480109	  3481443	+	80864	NR_037860.1	NA	NA	NA	NA	NA	Unknown
CUST_7058_PI429285431	10.67222	P	11.287427	P	0.652836216926482	0	lncRNA	7003-1_{1..730}	"transcript_id ""ENST00000442994.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442994.1"" | genecode_v17"	chrX	 50838690	 50839419	-	ENSG00000230317.1	ENST00000442994.1	RP11-104D21.3	RP11-104D21.3-001	NA	NA	NA	inter
CUST_15209_PI429285431	0.9202627	A	0.9168278	A	1.00238372782282	0	lncRNA	16878-1_{1..1140}	lnc-MAPK6-10:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAPK6-10:2	chr15	 52981559	 52982698	+	lnc-MAPK6-10	lnc-MAPK6-10:2	XLOC_011256	linc-UNC13C-5	NA	NA	NA	inter
CUST_5964_PI429285431	0.9277012	A	0.95474297	A	0.981430648318336	0	lncRNA	5893-1_{1..583}	"transcript_id ""ENST00000579749.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579749.1"" | genecode_v17"	chr17	 71757143	 71757725	-	ENSG00000177338.9	ENST00000579749.1	LINC00469	LINC00469-004	NA	NA	NA	inter
CUST_42382_PI429285431	9.89888	P	9.735336	P	1.12003514300469	0	lncRNA	45067-1_{1..182}	ENST00000365128 ncrna:snoRNA chromosome:GRCh37:11:9450320:9450501:1 gene:ENSG00000201998 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365128 ncrna:snoRNA chromosome:GRCh37:11:9450320:9450501:1 gene:ENSG00000201998 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	  9450320	  9450501	+	ENSG00000201998	ENST00000365128	NA	NA	IPO7	NA	chr11:9440320-9460501	inner
CUST_38995_PI429285431	1.9772787	A	2.6293583	A	0.636362355684634	0	lncRNA	39976-1_{1..382}	n385270|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vlj.1||3.1288700|-0.1768236	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385270|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vlj.1||3.1288700|-0.1768236	chr7	124417511	124417892	-	NA	NA	NA	NA	LOC154872	NA	chr7:124417346-124430864	inner
CUST_38307_PI429285431	5.512787	P	5.434222	P	1.05596718315212	0	lncRNA	39358-1_{1..690}	n381987|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uol.2||-1.2355500|-0.2868913	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381987|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uol.2||-1.2355500|-0.2868913	chr13	 23394480	 23395169	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21794_PI429285431	1.7021091	A	1.6950315	A	1.00491787171489	0	lncRNA	23404-1_{1..402}	lnc-PRKD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRKD1-2:1	chr14	 31042713	 31043114	-	lnc-PRKD1-2	lnc-PRKD1-2:1	ENSG00000257636.1	RP11-1103G16.1	G2E3	NA	chr14:31032713-31052835	inner
CUST_11122_PI429285431	1.8453134	A	3.0784268	A	0.425398425893298	0	lncRNA	12680-1_{1..733}	lnc-ANKRD27-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD27-5:2	chr19	 32516621	 32517353	-	lnc-ANKRD27-5	lnc-ANKRD27-5:2	XLOC_013297	linc-TSHZ3-3	NA	NA	NA	inter
CUST_9698_PI429285431	7.680561	P	7.6596103	P	1.01462787396647	0	lncRNA	11214-1_{1..1119}	lnc-RNASEH2B-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNASEH2B-3:7	chr13	 51107329	 51108447	+	lnc-RNASEH2B-3	lnc-RNASEH2B-3:7	XLOC_010390	linc-RNASEH2B-1	NA	NA	NA	inter
CUST_42856_PI429285431	0.90617466	A	0.89947486	A	1.0046547473159	0	lncRNA	45901-1_{1..72}	ENST00000516491 ncrna:snoRNA chromosome:GRCh37:4:141196195:141196266:-1 gene:ENSG00000252300 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516491 ncrna:snoRNA chromosome:GRCh37:4:141196195:141196266:-1 gene:ENSG00000252300 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	141196195	141196266	-	ENSG00000252300	ENST00000516491	NA	NA	SCOC	NA	chr4:141186195-141206266	inner
CUST_32501_PI429285431	1.8690777	A	1.6459088	A	1.1672947520028	0	lncRNA	34168-1_{1..986}	n339105|AF119893|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1535|NULL|-1.1048200|-0.2701433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339105|AF119893|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1535|NULL|-1.1048200|-0.2701433	chr2	206642417	206643402	-	NA	NA	NA	NA	NRP2	NA	chr2:206632417-206653405	inner
CUST_6455_PI429285431	1.0770866	A	0.90851045	A	1.12394866990246	0	lncRNA	6396-1_{1..435}	"transcript_id ""ENST00000590719.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590719.1"" | genecode_v17"	chr19	 32531392	 32531826	+	ENSG00000267779.1	ENST00000590719.1	CTC-360P9.3	CTC-360P9.3-004	NA	NA	NA	inter
CUST_14824_PI429285431	6.7051563	P	6.7134514	P	0.994266772857478	0	lncRNA	16486-1_{1..337}	lnc-CDH4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH4-1:1	chr20	 60523321	 60523657	+	lnc-CDH4-1	lnc-CDH4-1:1	XLOC_013595	linc-LSM14B-2	NA	NA	NA	inter
CUST_22938_PI429285431	2.915638	P	3.1117318	A	0.872910835065544	0	lncRNA	24513-1_{1..570}	lnc-TRIM29-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM29-1:2	chr11	120136575	120137144	-	lnc-TRIM29-1	lnc-TRIM29-1:2	ENSG00000259541.1	RP11-778O17.4	POU2F3	NA	chr11:120126575-120146641	inter
CUST_43172_PI429285431	3.104832	P	2.8784938	A	1.16986187371082	0	lncRNA	47986-1_{1..405}	ENST00000601692 havana:sense_intronic chromosome:GRCh37:19:35527238:35527964:1 gene:ENSG00000267874 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000601692 havana:sense_intronic chromosome:GRCh37:19:35527238:35527964:1 gene:ENSG00000267874 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 35527238	 35527642	+	ENSG00000267874	ENST00000601692	NA	NA	HPN	NA	chr19:35531410-35537964	inner
CUST_9153_PI429285431	4.387156	P	4.2765813	P	1.07965823453011	0	lncRNA	10672-1_{1..464}	lnc-CYR61-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CYR61-3:2	chr1	 85913481	 85913944	+	lnc-CYR61-3	lnc-CYR61-3:2	ENSG00000223653	RP11-131L23.1	DDAH1	NA	chr1:85903481-85923807	inner
CUST_12281_PI429285431	0.9197575	A	0.9164742	A	1.00227840175946	0	lncRNA	13890-1_{1..1252}	lnc-SLC35G4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC35G4-1:2	chr18	 11506756	 11508007	+	lnc-SLC35G4-1	lnc-SLC35G4-1:2	XLOC_012626	linc-GNAL-1	NA	NA	NA	inter
CUST_23638_PI429285431	5.161688	P	5.4319787	P	0.829152456514284	0	lncRNA	25203-1_{1..322}	lnc-TUSC5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUSC5-2:2	chr17	  1329599	  1329920	+	lnc-TUSC5-2	lnc-TUSC5-2:2	ENSG00000262777.1	RP11-818O24.3	CRK	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.69;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.30chr17:1325440-1339778"	NA	inner
LNCA_21_P0010734	3.2197256	P	3.2925746	P	0.950758607385174	0	lncRNA	ENST00000434447	NA	NA	NA	NA	XLOC_l2_000522	NA	ENST00000434447	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000522), lincRNA [TCONS_l2_00002250]"	chr1:180878212-180878271	hs|1q25.3	Agilent_HUMAN_G3V2	ENST00000434447	ENST00000434447	chr1	180878212	180878271	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40103_PI429285431	2.4995968	A	1.8442425	A	1.57500269803281	0	lncRNA	40948-1_{1..689}	n407517|NR_026973_4|lncRNA|Homosapiens||RefGeneNoncode|NR_026973_4||0.1467440|-0.3692806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407517|NR_026973_4|lncRNA|Homosapiens||RefGeneNoncode|NR_026973_4||0.1467440|-0.3692806	chr6	  1032127	  1032815	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15729_PI429285431	4.349174	P	4.659692	P	0.806352186293988	0	lncRNA	17414-1_{1..388}	lnc-IDS-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IDS-3:1	chrX	147582058	147582445	-	lnc-IDS-3	lnc-IDS-3:1	XLOC_008254	linc-CXorf51-1	AFF2	NA	chrX:147582139-147592135	inter
CUST_8958_PI429285431	0.90233386	A	0.8976451	A	1.00325528775285	0	lncRNA	10492-1_{1..2977}	lnc-FBN2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-FBN2-2:4	chr5	127418662	127421638	-	lnc-FBN2-2	lnc-FBN2-2:4	ENSG00000245937	CTC-228N24.3	SLC12A2	NA	chr5:127419483-127428766	inter
LNCA_21_P0003050	0.9256437	A	1.253979	A	0.796454968882422	0	lncRNA	TCONS_00006285	NA	NA	NA	NA	XLOC_002890	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002890), lincRNA [TCONS_00006285]"	chr3:156536684-156536743	hs|3q25.31	Agilent_HUMAN_G3V2	TCONS_00006285	TCONS_00006285	chr3	156536684	156536743	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_354_PI429285431	3.4031875	P	2.759819	A	1.56197190052658	0	lncRNA	347-1_{1..476}	"transcript_id ""ENST00000453347.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453347.1"" | genecode_v17"	chr1	110370977	110371452	+	ENSG00000228420.1	ENST00000453347.1	RP4-735C1.6	RP4-735C1.6-001	NA	NA	NA	inter
CUST_27539_PI429285431	0.9148694	A	0.9160149	A	0.999206315039333	0	lncRNA	29114-1_{1..727}	n324723|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319603|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319603|-0.9015310|-0.3809521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324723|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319603|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319603|-0.9015310|-0.3809521	chr22	 18970967	 18971693	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60"	NA	inter
CUST_45601_PI429285431	0.99989176	A	0.9041452	A	1.06861824924796	0	lncRNA	49989-1_{1..659}	"gi|397139376|ref|XR_110406.2| PREDICTED: Homo sapiens uncharacterized LOC100507008 (LOC100507008), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139376|ref|XR_110406.2| PREDICTED: Homo sapiens uncharacterized LOC100507008 (LOC100507008), misc_RNA"	Chr10	 60759319	 60759977	+	100507008	XR_110406.3	NA	NA	NA	NA	NA	inter
CUST_14602_PI429285431	0.91677535	A	0.9195048	A	0.998109877962733	0	lncRNA	16269-1_{1..613}	lnc-SLC25A21-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A21-2:1	chr14	 38067511	 38068123	-	lnc-SLC25A21-2	lnc-SLC25A21-2:1	XLOC_010998	linc-FOXA1-2	LOC100652767	NA	chr14:38072303-38077552	inter
CUST_10017_PI429285431	1.3026414	A	1.5354434	A	0.850980512731645	0	lncRNA	11542-1_{1..705}	lnc-CDC25B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDC25B-1:1	chr20	  3792815	  3793519	+	lnc-CDC25B-1	lnc-CDC25B-1:1	XLOC_013445	linc-C20orf29	CDC25B	NA	chr20:3782815-3786762	inter
CUST_38564_PI429285431	6.8449297	P	6.1117754	P	1.66226949774164	0	lncRNA	39575-1_{1..1724}	n383501|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002odz.1||5.5311700|-0.2056257	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383501|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002odz.1||5.5311700|-0.2056257	chr19	 36912075	 36913798	+	NA	NA	NA	NA	ZFP82	NA	chr19:36902075-36909550	inter
CUST_6273_PI429285431	1.1059475	A	0.89498675	A	1.15745872670858	0	lncRNA	6197-1_{1..1249}	"transcript_id ""ENST00000577408.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577408.1"" | genecode_v17"	chr18	 75683250	 75684498	-	ENSG00000265843.1	ENST00000577408.1	RP11-671C19.1	RP11-671C19.1-002	NA	NA	NA	inter
CUST_29895_PI429285431	0.91876256	A	0.91345656	A	1.0036846104887	0	lncRNA	31658-1_{1..282}	n333970|M14191|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194308_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194308_03|-1.1363700|-0.4504712	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333970|M14191|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194308_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194308_03|-1.1363700|-0.4504712	chr6	  3999421	  3999702	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8094_PI429285431	0.92753965	A	0.9114377	A	1.01122353780804	0	lncRNA	9699-1_{1..2066}	lnc-FBXL7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-FBXL7-2:1	chr5	 16183832	 16185897	+	lnc-FBXL7-2	lnc-FBXL7-2:1	ENSG00000250448	RP11-19O2.2	11-Mar	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30chr5:16173832-16179897"	NA	inter
CUST_169_PI429201921	1.8926735	A	1.1904228	A	1.6270411058841	0	lncRNA	143-1_{1..3000}	TC15002594.hg.1	 TCONS_00023714-XLOC_011515 // Rinn lincRNAs // linc-ITGA11 chr15:-:68775552-68778965 // chr15 // 100 // 100 // 0 // --- // 0 ///TCONS_00024147-XLOC_011515 // Rinn lincRNAs // linc-ITGA11 chr15:-:68775546-68777423 // chr15 // 100 // 100 // 0 // --- // 0 /// TCONS_00024148-XLOC_011515 // Rinn lincRNAs // linc-ITGA11 chr15:-:68776650-68779860 // chr15 // 100 // 100 // 0 // --- // 0/// TCONS_00023717-XLOC_011515 // Rinn lincRNAs // linc-ITGA11 chr15:-:68775552-68779811 // chr15 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr15:-:68775546-68777423	NA	Affy_HUMAN_HTA2.0	TCONS_00024147-XLOC_011515	linc-ITGA11	chr15	 68775546	 68777423	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33314_PI429285431	0.9278689	A	1.362184	A	0.740044997618833	0	lncRNA	34896-2_{3001..5945}	n340030|CR749831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2484|NULL|-0.7938280|-0.3827225	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340030|CR749831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2484|NULL|-0.7938280|-0.3827225	chr10	 52562792	 52565736	-	NA	NA	NA	NA	A1CF	"hg19_refFlat_PRRG1:range=chrX:37265503-373001215'pad=0,hg19_refFlat_PRRG1:range=chrX:37265503-373001215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30chr10:52559169-52575728"	NA	inner
CUST_10016_PI429285431	0.9079087	A	1.2112181	A	0.810391304941158	0	lncRNA	11541-1_{1..1039}	lnc-RASA1-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASA1-3:8	chr5	 87565285	 87566323	+	lnc-RASA1-3	lnc-RASA1-3:8	XLOC_004456	linc-POLR3G-11	TMEM161B	NA	chr5:87555285-87564665	inter
CUST_44576_PI429285431	2.8823647	A	3.1038315	P	0.857692969443155	0	lncRNA	49158-1_{1..3000}	"gi|211971063|ref|NR_024384.1| Homo sapiens long intergenic non-protein coding RNA 461 (LINC00461), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|211971063|ref|NR_024384.1| Homo sapiens long intergenic non-protein coding RNA 461 (LINC00461), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NR_024384.1	NA	NA	NA	NA	NA	Unknown
CUST_45802_PI429285431	0.9251911	A	1.3265411	A	0.757149450053185	0	lncRNA	50142-1_{1..1972}	"gi|253314538|ref|NR_027991.1| Homo sapiens apelin receptor (APLNR), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|253314538|ref|NR_027991.1| Homo sapiens apelin receptor (APLNR), transcript variant 2, non-coding RNA"	Chr11	 57001051	 57003022	-	187	NR_027991.1	NA	NA	NA	NA	NA	inter
CUST_18260_PI429285431	0.9133964	A	1.779908	A	0.548471438595842	0	lncRNA	19994-1_{1..149}	lnc-AADACL2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AADACL2-1:4	chr3	151494592	151494740	+	lnc-AADACL2-1	lnc-AADACL2-1:4	ENSG00000240602	RP11-64D22.2	NA	NA	NA	inter
CUST_13680_PI429285431	4.643149	P	4.598078	P	1.0317339532391	0	lncRNA	15319-1_{1..329}	lnc-THSD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THSD4-1:1	chr15	 72082287	 72082615	+	lnc-THSD4-1	lnc-THSD4-1:1	XLOC_011299	linc-NR2E3-2	THSD4	NA	chr15:72072287-72075722	inter
LNCA_21_P0008120	0.9231182	A	0.909352	A	1.00958767277063	0	lncRNA	TCONS_00021907	NA	NA	NA	NA	XLOC_010502	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010502), lincRNA [TCONS_00021907]"	chr13:112514448-112514507	hs|13q34	Agilent_HUMAN_G3V2	TCONS_00021907	TCONS_00021907	chr13	112514448	112514507	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44497_PI429285431	3.5736263	P	3.6373844	P	0.956768568232581	0	lncRNA	49097-1_{1..2764}	"gi|385719182|ref|NR_047670.1| Homo sapiens family with sequence similarity 173, member B (FAM173B), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385719182|ref|NR_047670.1| Homo sapiens family with sequence similarity 173, member B (FAM173B), transcript variant 6, non-coding RNA"	Chr5	 10225619	 10228382	-	134145	NR_047670.1	NA	NA	NA	NA	NA	inter
CUST_11577_PI429285431	2.7860482	A	2.5413816	A	1.18481893325022	0	lncRNA	13156-1_{1..725}	lnc-PML-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PML-2:1	chr15	 74348320	 74349044	+	lnc-PML-2	lnc-PML-2:1	XLOC_011309	linc-ISLR2-2	PML	NA	chr15:74338320-74340160	inter
CUST_41170_PI429285431	0.89946544	A	0.90448517	A	0.996526634441838	0	lncRNA	41996-1_{1..71}	ENST00000408677 ncrna:miRNA chromosome:GRCh37:12:50627925:50627995:-1 gene:ENSG00000221604 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408677 ncrna:miRNA chromosome:GRCh37:12:50627925:50627995:-1 gene:ENSG00000221604 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 50627925	 50627995	-	ENSG00000221604	ENST00000408677	NA	NA	LIMA1	NA	chr12:50617925-50637995	inner
CUST_42407_PI429285431	11.219808	P	11.093578	P	1.09143786441375	0	lncRNA	45111-1_{1..137}	ENST00000384249 ncrna:snoRNA chromosome:GRCh37:11:3943797:3943933:1 gene:ENSG00000206976 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384249 ncrna:snoRNA chromosome:GRCh37:11:3943797:3943933:1 gene:ENSG00000206976 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	  3943797	  3943933	+	ENSG00000206976	ENST00000384249	NA	NA	STIM1	NA	chr11:3933797-3953933	inner
CUST_3775_PI429285431	1.0369046	A	1.5573984	A	0.697133180324314	0	lncRNA	3743-1_{1..522}	"transcript_id ""ENST00000450669.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450669.2"" | genecode_v17"	chr10	103082242	103082763	-	ENSG00000230967.2	ENST00000450669.2	RP11-107I14.5	RP11-107I14.5-001	NA	NA	NA	inter
CUST_36158_PI429285431	0.8987521	A	0.89464843	A	1.00284849656905	0	lncRNA	37432-1_{1..3000}	n344719|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_268|NULL|-1.5775600|-0.3518995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344719|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_268|NULL|-1.5775600|-0.3518995	chr6	 53597576	 53600575	-	NA	NA	NA	NA	LRRC1	NA	chr6:53659778-53668488	inter
CUST_34798_PI429285431	4.493155	P	4.4047537	P	1.06319137050411	0	lncRNA	36234-1_{1..1914}	n341705|AF070595|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4177|NULL|-1.0729000|-0.3875501	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341705|AF070595|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4177|NULL|-1.0729000|-0.3875501	chr9	 80034562	 80036475	+	NA	NA	NA	NA	VPS13A	NA	chr9:80024562-80032399	inter
CUST_35042_PI429285431	1.3780193	A	0.89805984	A	1.39470447434364	0	lncRNA	36453-1_{1..2060}	n341988|AK056076|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4469|NULL|12.3867000|-0.1171106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341988|AK056076|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4469|NULL|12.3867000|-0.1171106	chr12	 96883384	 96885443	+	NA	NA	NA	NA	C12orf55	NA	chr12:96883388-96944745	inter
CUST_6951_PI429285431	6.1570244	P	5.6165047	P	1.45449637413818	0	lncRNA	6900-1_{1..612}	"transcript_id ""ENST00000602816.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602816.1"" | genecode_v17"	chr22	 24080865	 24081476	-	ENSG00000270041.1	ENST00000602816.1	LL22NC03-N27C7.1	LL22NC03-N27C7.1-001	ZNF70	NA	chr22:24083772-24091476	inter
CUST_47539_PI429285431	1.085163	A	0.92826235	A	1.11488944014548	0	lncRNA	51549-1_{1..1378}	"gi|310124160|ref|XR_109738.1| PREDICTED: Homo sapiens LPEQ6126 (LOC100128818), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124160|ref|XR_109738.1| PREDICTED: Homo sapiens LPEQ6126 (LOC100128818), misc_RNA"	NA	NA	NA	NA	NA	XR_109738.1	NA	NA	NA	NA	NA	Unknown
CUST_30032_PI429285431	1.1126082	A	0.9095381	A	1.15114542368455	0	lncRNA	31801-1_{1..851}	n334506|U31762|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219160|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219160|0.3922130|-0.0945074	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334506|U31762|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219160|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219160|0.3922130|-0.0945074	chr17	 48049676	 48050526	+	NA	NA	NA	NA	DLX4	NA	chr17:48039676-48052323	inner
CUST_19610_PI429285431	0.90281934	A	0.89854735	A	1.00296550626376	0	lncRNA	21266-1_{1..2936}	lnc-SPATA19-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SPATA19-2:1	chr11	133235204	133238139	-	lnc-SPATA19-2	lnc-SPATA19-2:1	ENSG00000254896.1	OPCML-IT1	OPCML	"hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0,hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00chr11:133225204-133245975"	NA	inner
CUST_41021_PI429285431	5.024427	P	5.521633	P	0.708477528715853	0	lncRNA	41681-1_{1..2419}	n411627|NR_040090_7|lncRNA|Homosapiens||RefGeneNoncode|NR_040090_7||0.0967333|-0.3135031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411627|NR_040090_7|lncRNA|Homosapiens||RefGeneNoncode|NR_040090_7||0.0967333|-0.3135031	chr6	  3476797	  3479215	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50"	NA	inter
CUST_35044_PI429285431	0.89506656	A	0.9157147	A	0.98578973263698	0	lncRNA	36455-1_{1..3000}	n341990|BC040994|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4471|NULL|0.0460503|-0.4063189	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341990|BC040994|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4471|NULL|0.0460503|-0.4063189	chr12	 97543858	 97546857	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_HHLA3:range=chr1:70820635-708322015'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708322015'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_HHLA3:range=chr1:70820635-708322145'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708322145'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90"	NA	inter
CUST_2606_PI429285431	1.418217	A	1.504551	A	0.941913185248263	0	lncRNA	2593-1_{1..488}	"transcript_id ""ENST00000446322.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446322.1"" | genecode_v17"	chr6	112797740	112798227	-	ENSG00000232299.1	ENST00000446322.1	RP1-105O18.1	RP1-105O18.1-001	NA	NA	NA	inter
CUST_18942_PI429285431	0.9240748	A	1.1642401	A	0.846648300188812	0	lncRNA	20633-1_{1..2333}	lnc-TANK-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TANK-1:2	chr2	162103386	162105718	+	lnc-TANK-1	lnc-TANK-1:2	ENSG00000227403	AC009299.3	NA	NA	NA	inter
CUST_20667_PI429285431	2.0068269	A	1.5202533	A	1.40111327769895	0	lncRNA	22306-1_{1..353}	lnc-NFX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NFX1-1:1	chr9	 33409880	 33410232	+	lnc-NFX1-1	lnc-NFX1-1:1	ENSG00000223678.1	RP11-311H10.4	AQP7	NA	chr9:33399880-33402517	inter
CUST_50822_PI429285431	3.5609896	P	4.8669233	P	0.404459260945283	0	lncRNA	54472-2_{3001..4651}	hg19_lincRNAsTranscripts_TCONS_l2_00004559 range=chr11:65184126-65194186 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004559 range=chr11:65184126-65194186 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65187126	 65188776	+	NA	NA	NA	NA	FRMD8	NA	chr11:65174126-65180996	inter
CUST_41086_PI429285431	3.356789	P	3.4655619	P	0.927376516738	0	lncRNA	41779-1_{1..73}	ENST00000584016 ncrna:miRNA chromosome:GRCh37:11:123252148:123252220:-1 gene:ENSG00000265357 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584016 ncrna:miRNA chromosome:GRCh37:11:123252148:123252220:-1 gene:ENSG00000265357 gene_biotype:miRNA transcript_biotype:miRNA	chr11	123252148	123252220	-	ENSG00000265357	ENST00000584016	NA	NA	NA	NA	NA	inter
CUST_13881_PI429285431	1.0480089	A	1.3371214	A	0.818405360623556	0	lncRNA	15525-3_{6001..9000}	lnc-CRYBA4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CRYBA4-1:2	chr22	 27070121	 27073120	+	lnc-CRYBA4-1	lnc-CRYBA4-1:2	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
CUST_29993_PI429285431	2.696614	A	3.0672722	P	0.773429554906876	0	lncRNA	31759-1_{1..253}	n334366|S76492|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216673|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216673|0.9117830|-0.0447348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334366|S76492|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216673|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216673|0.9117830|-0.0447348	chr2	 25384403	 25384655	-	NA	NA	NA	NA	EFR3B	NA	chr2:25374403-25382004	inner
CUST_50343_PI429285431	15.009298	P	13.789975	P	2.32837430211828	0	lncRNA	54058-1_{1..1641}	hg19_lincRNAsTranscripts_TCONS_l2_00029098 range=chr9:135894806-135896562 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029098 range=chr9:135894806-135896562 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	135894806	135896446	+	NA	NA	NA	NA	GTF3C5	NA	chr9:135906062-135906562	inter
CUST_9994_PI429285431	1.3465266	A	0.9259665	A	1.33844708156499	0	lncRNA	11520-1_{1..791}	lnc-FAM126B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM126B-1:1	chr2	201979830	201980620	-	lnc-FAM126B-1	lnc-FAM126B-1:1	XLOC_002461	linc-FAM126B	CFLAR	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chr2:201969830-201990387"	NA	inter
CUST_46316_PI429285431	5.9218044	P	3.9212823	P	4.00144783053533	0	lncRNA	50546-1_{1..3000}	"gi|402478656|ref|NR_073128.1| Homo sapiens kinectin 1 (kinesin receptor) (KTN1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402478656|ref|NR_073128.1| Homo sapiens kinectin 1 (kinesin receptor) (KTN1), transcript variant 6, non-coding RNA"	Chr14	 56046925	 56049924	+	3895	NR_073128.1	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_21862_PI429285431	4.9767833	P	5.4023094	P	0.744567164663597	0	lncRNA	23472-1_{1..1753}	lnc-ZNF276-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ZNF276-1:1	chr16	 89783752	 89785504	+	lnc-ZNF276-1	lnc-ZNF276-1:1	ENSG00000261373.1	RP11-368I7.2	C16orf7	"hg19_refFlat_VPS9D1:range=chr16:89774269-897872695'pad=0,hg19_refFlat_VPS9D1:range=chr16:89774269-897872695'pad=0 3'pad=0 strand=- repeatMasking=none,-101.90chr16:89773752-89787394"	NA	inter
CUST_23508_PI429285431	1.0383044	A	1.2693696	A	0.852005589349034	0	lncRNA	25075-1_{1..480}	lnc-IGSF10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IGSF10-2:1	chr3	151645645	151646124	-	lnc-IGSF10-2	lnc-IGSF10-2:1	ENSG00000242908.2	RP11-454C18.2	NA	NA	NA	inter
CUST_16360_PI429285431	1.8505876	A	2.3692598	A	0.698013962341794	0	lncRNA	18058-1_{1..289}	lnc-MPRIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MPRIP-1:1	chr17	 16926501	 16926789	+	lnc-MPRIP-1	lnc-MPRIP-1:1	XLOC_012127	linc-MPRIP-1	NA	NA	NA	inter
CUST_49150_PI429285431	1.0920302	A	1.4792937	A	0.764578480300219	0	lncRNA	52976-1_{1..696}	hg19_lincRNAsTranscripts_TCONS_l2_00020729 range=chr4:120852844-120885446 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020729 range=chr4:120852844-120885446 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	120852844	120853539	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00322036	5.39203	P	5.8070235	P	0.750022873830859	0	lncRNA	THC2657342	NA	NA	NA	NA	XLOC_009868	NA	NA	THC2657342	NA	"BROAD Institute lincRNA (XLOC_009868), lincRNA [TCONS_00020555]"	chr12:105806328-105806387	hs|12q23.3	Agilent_HUMAN_G3V2	THC2657342	THC2657342	chr12	105806328	105806387	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006289	5.207861	P	5.64154	P	0.740371363484575	0	lncRNA	TCONS_00016396	NA	NA	NA	NA	XLOC_007765	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007765), lincRNA [TCONS_00016396]"	chr9:90893344-90893285	hs|9q22.1	Agilent_HUMAN_G3V2	TCONS_00016396	TCONS_00016396	chr9	 90893285	 90893344	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10601_PI429285431	1.8157114	A	0.90956897	A	1.87402789792844	0	lncRNA	12129-1_{1..614}	lnc-WRB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRB-1:1	chr21	 40742507	 40743120	+	lnc-WRB-1	lnc-WRB-1:1	XLOC_013943	linc-WRB-1	WRB	NA	chr21:40752213-40752922	inter
CUST_45038_PI429285431	3.2359989	P	1.5161343	A	3.29405490049948	0	lncRNA	49535-1_{1..2380}	"gi|394025766|ref|NR_073002.1| Homo sapiens dihydrouridine synthase 4-like (S. cerevisiae) (DUS4L), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|394025766|ref|NR_073002.1| Homo sapiens dihydrouridine synthase 4-like (S. cerevisiae) (DUS4L), transcript variant 3, non-coding RNA"	Chr7	107204402	107206781	+	11062	NR_073002.1	NA	NA	NA	NA	NA	inter
CUST_16882_PI429285431	0.915219	A	0.9141998	A	1.00070670520496	0	lncRNA	18591-1_{1..525}	lnc-PRR5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRR5-1:1	chr22	 45020433	 45020957	+	lnc-PRR5-1	lnc-PRR5-1:1	XLOC_014266	linc-PRR5-1	NA	NA	NA	inter
CUST_20224_PI429285431	5.1211486	P	5.0374627	P	1.05972203821553	0	lncRNA	21868-1_{1..697}	lnc-NPDC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPDC1-2:1	chr9	139932066	139932762	-	lnc-NPDC1-2	lnc-NPDC1-2:1	ENSG00000235117.1	RP11-229P13.20	NPDC1	NA	chr9:139933909-139940676	inter
CUST_3053_PI429285431	0.9277154	A	0.9305139	A	0.998062107757776	0	lncRNA	3032-1_{1..1867}	"transcript_id ""ENST00000507496.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507496.1"" | genecode_v17"	chr8	 29672520	 29674386	-	ENSG00000248964.2	ENST00000507496.1	RP11-94H18.1	RP11-94H18.1-001	NA	NA	NA	inter
CUST_13926_PI429285431	11.543578	P	11.169884	P	1.29566612156711	0	lncRNA	15573-1_{1..594}	lnc-PIGT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIGT-1:1	chr20	 44076884	 44077477	+	lnc-PIGT-1	lnc-PIGT-1:1	XLOC_013534	linc-WFDC2-2	NA	NA	NA	inter
CUST_9910_PI429285431	0.9241868	A	0.91984224	A	1.00301595839353	0	lncRNA	11434-1_{1..757}	lnc-NDFIP2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDFIP2-7:1	chr13	 80732845	 80733601	+	lnc-NDFIP2-7	lnc-NDFIP2-7:1	XLOC_010451	linc-SLITRK5-11	NA	NA	NA	inter
CUST_2945_PI429285431	0.91434443	A	0.9142421	A	1.00007093226656	0	lncRNA	2926-1_{1..672}	"transcript_id ""ENST00000422084.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422084.1"" | genecode_v17"	chr7	145372975	145373646	-	ENSG00000230746.1	ENST00000422084.1	AC006007.1	AC006007.1-001	NA	NA	NA	inter
CUST_11364_PI429285431	1.2633071	A	2.7984157	A	0.345053363209149	0	lncRNA	12928-1_{1..339}	lnc-SRCIN1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRCIN1-1:3	chr17	 36608562	 36608900	-	lnc-SRCIN1-1	lnc-SRCIN1-1:3	XLOC_012457	linc-GPR179	ARHGAP23	NA	chr17:36598562-36618673	inner
CUST_13899_PI429285431	3.9522977	P	4.18432	P	0.851440546775628	0	lncRNA	15546-1_{1..789}	lnc-EIF2B5-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2B5-2:7	chr3	184456423	184457211	+	lnc-EIF2B5-2	lnc-EIF2B5-2:7	XLOC_002952	linc-VPS8-2	NA	NA	NA	inter
CUST_41176_PI429285431	0.9208906	A	0.9124267	A	1.00588397137615	0	lncRNA	42009-1_{1..90}	ENST00000577763 ncrna:miRNA chromosome:GRCh37:18:50763471:50763560:1 gene:ENSG00000263872 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577763 ncrna:miRNA chromosome:GRCh37:18:50763471:50763560:1 gene:ENSG00000263872 gene_biotype:miRNA transcript_biotype:miRNA	chr18	 50763471	 50763560	+	ENSG00000263872	ENST00000577763	NA	NA	DCC	NA	chr18:50753471-50773560	inner
CUST_30248_PI429285431	3.0255163	A	3.4274433	P	0.756846691764903	0	lncRNA	32023-1_{1..446}	n335124|AY187235|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250920|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250920|1.7750500|-0.1391131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335124|AY187235|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250920|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250920|1.7750500|-0.1391131	chr16	 50746105	 50746550	+	NA	NA	NA	NA	NOD2	NA	chr16:50736105-50766987	inner
LNCA_21_P0004514	2.7806535	A	3.7673297	P	0.504639065938397	0	lncRNA	TCONS_00010726	NA	NA	NA	NA	XLOC_004448	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004448), lincRNA [TCONS_00010726]"	chr5:82684188-82687184	hs|5q14.2	Agilent_HUMAN_G3V2	TCONS_00010726	TCONS_00010726	chr5	 82684188	 82687184	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19795_PI429285431	1.8518119	A	0.928742	A	1.89614579816889	0	lncRNA	21453-1_{1..3000}	lnc-CPVL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPVL-2:1	chr7	 28992974	 28995973	-	lnc-CPVL-2	lnc-CPVL-2:1	ENSG00000176734.3	TRIL	TRIL	NA	chr7:28992974-28998029	inner
CUST_23483_PI429285431	0.94597805	A	0.92661536	A	1.01351166248421	0	lncRNA	25050-1_{1..397}	lnc-PRPF18-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRPF18-1:2	chr10	 13690085	 13690481	+	lnc-PRPF18-1	lnc-PRPF18-1:2	ENSG00000239665.1	RP11-295P9.3	FRMD4A	NA	chr10:13685706-13700230	inner
LNCA_21_P0004546	1.0345054	A	0.98640347	A	1.03390378154629	0	lncRNA	TCONS_00010855	NA	NA	NA	NA	XLOC_004672	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004672), lincRNA [TCONS_00010855]"	chr5:177661854-177662021	hs|5q35.3	Agilent_HUMAN_G3V2	TCONS_00010855	TCONS_00010855	chr5	177661854	177662021	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26224_PI429285431	0.9647498	A	0.93059903	A	1.02395390395942	0	lncRNA	27731-1_{1..729}	lnc-RAB3C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAB3C-1:1	chr5	 58358912	 58359640	+	lnc-RAB3C-1	lnc-RAB3C-1:1	ENSG00000247345.2	RP11-266N13.2	PDE4D	NA	chr5:58348912-58369330	inner
CUST_26595_PI429285431	5.706706	P	5.7463145	P	0.972918929801725	0	lncRNA	28098-1_{1..541}	lnc-C17orf48-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf48-2:3	chr17	 10669996	 10670536	+	lnc-C17orf48-2	lnc-C17orf48-2:3	ENSG00000263400.1	CTC-297N7.5	NA	"hg19_refFlat_TMEM220:range=chr17:10618770-106331685'pad=0,hg19_refFlat_TMEM220:range=chr17:10618770-106331685'pad=0 3'pad=0 strand=- repeatMasking=none,-99.20"	NA	inter
CUST_37004_PI429285431	4.783479	P	5.1442184	P	0.778765349978512	0	lncRNA	38145-1_{1..1164}	n345462|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1011|NULL|-1.4593700|-0.3201060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345462|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1011|NULL|-1.4593700|-0.3201060	chr1	147718200	147719363	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1808_PI429285431	3.0625815	A	3.076747	A	0.99022927041645	0	lncRNA	1795-1_{1..571}	"transcript_id ""ENST00000513871.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513871.1"" | genecode_v17"	chr4	 78315645	 78316215	-	ENSG00000249036.1	ENST00000513871.1	RP11-625I7.1	RP11-625I7.1-001	NA	NA	NA	inter
CUST_21702_PI429285431	3.2485523	P	1.2750069	A	3.92732066882565	0	lncRNA	23313-1_{1..1280}	lnc-GJA10-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GJA10-3:2	chr6	 90571845	 90573124	+	lnc-GJA10-3	lnc-GJA10-3:2	ENSG00000118412.8	CASP8AP2	CASP8AP2	NA	chr6:90561845-90582512	inner
CUST_24280_PI429285431	9.863548	P	9.830558	P	1.02313037791049	0	lncRNA	25831-1_{1..323}	lnc-CTD-2517M22.14.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2517M22.14.1-1:2	chr8	145730348	145730670	-	lnc-CTD-2517M22.14.1-1	lnc-CTD-2517M22.14.1-1:2	ENSG00000255182.1	CTD-2517M22.14	MFSD3	"hg19_refFlat_GPT:range=chr8:145729688-1457323835'pad=0,hg19_refFlat_GPT:range=chr8:145729688-1457323835'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.10chr8:145734552-145736589"	NA	inner
CUST_29975_PI429285431	6.80633	P	7.0126066	P	0.866771366267549	0	lncRNA	31741-1_{1..480}	n334230|S63834|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216032|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216032|1.1982600|-0.1403209	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334230|S63834|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216032|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216032|1.1982600|-0.1403209	chr1	 41945125	 41945604	-	NA	NA	NA	NA	EDN2	NA	chr1:41944446-41950344	inner
CUST_45530_PI429285431	1.0777203	A	1.6108811	A	0.691039077092276	0	lncRNA	49938-1_{1..1179}	"gi|310120459|ref|XR_109019.1| PREDICTED: Homo sapiens uncharacterized LOC100507531 (LOC100507531), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310120459|ref|XR_109019.1| PREDICTED: Homo sapiens uncharacterized LOC100507531 (LOC100507531), misc_RNA"	NA	NA	NA	NA	NA	XR_109019.1	NA	NA	NA	NA	NA	Unknown
CUST_27849_PI429285431	0.9308114	A	0.93059254	A	1.0001517136993	0	lncRNA	29442-1_{1..480}	n325085|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077801|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077801|-0.8980940|-0.1116094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325085|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077801|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077801|-0.8980940|-0.1116094	chr20	  4121713	  4122192	+	NA	NA	NA	NA	SMOX	NA	chr20:4129450-4134375	inter
CUST_35802_PI429285431	8.366623	P	9.137724	P	0.585970117884228	0	lncRNA	37209-1_{1..2983}	n344479|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_27|NULL|-1.2827600|-0.1744060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344479|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_27|NULL|-1.2827600|-0.1744060	chr9	132094675	132097657	+	NA	NA	NA	NA	C9orf106	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-53.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.41;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr9:132084675-132084882"	NA	inter
CUST_47885_PI429285431	0.90926754	A	0.90559757	A	1.00254706763744	0	lncRNA	51779-2_{3001..3581}	"gi|410171576|ref|XR_171261.1| PREDICTED: Homo sapiens uncharacterized LOC440742 (LOC440742), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171576|ref|XR_171261.1| PREDICTED: Homo sapiens uncharacterized LOC440742 (LOC440742), misc_RNA"	NA	NA	NA	NA	NA	XR_171261.1	NA	NA	NA	NA	NA	Unknown
CUST_9469_PI429285431	3.0335038	A	3.2067492	A	0.886845441403673	0	lncRNA	10975-1_{1..1693}	lnc-ARL4D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARL4D-1:1	chr17	 41457368	 41459060	+	lnc-ARL4D-1	lnc-ARL4D-1:1	XLOC_012210	linc-ARL4D-1	NA	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-60.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-27.00"	NA	inter
CUST_1644_PI429285431	2.926063	A	3.425846	P	0.707213147194325	0	lncRNA	1629-1_{1..503}	"transcript_id ""ENST00000432194.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432194.3"" | genecode_v17"	chr3	195428510	195429012	+	ENSG00000242086.3	ENST00000432194.3	AC069513.3	AC069513.3-003	MUC20	NA	chr3:195447753-195459613	inner
LNCA_21_P0011674	3.6843305	P	3.9233658	P	0.847311702588844	0	lncRNA	TCONS_l2_00012303	NA	NA	NA	NA	XLOC_l2_006595	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006595), lincRNA [TCONS_l2_00012303]"	chr19:10528514-10528573	hs|19p13.2	Agilent_HUMAN_G3V2	TCONS_l2_00012303	TCONS_l2_00012303	chr19	 10528514	 10528573	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45252_PI429285431	4.269367	P	4.538233	P	0.829971671208199	0	lncRNA	49705-1_{1..499}	"gi|397139290|ref|XR_158837.1| PREDICTED: Homo sapiens uncharacterized LOC100996457, transcript variant 1 (LOC100996457), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139290|ref|XR_158837.1| PREDICTED: Homo sapiens uncharacterized LOC100996457, transcript variant 1 (LOC100996457), misc_RNA"	Chr8	103953843	103954341	+	100996457	XR_158837.2	NA	NA	NA	NA	NA	inter
CUST_41686_PI429285431	0.92516816	A	0.9154694	A	1.00674531600534	0	lncRNA	43153-1_{1..95}	ENST00000384996 ncrna:miRNA chromosome:GRCh37:1:162312336:162312430:1 gene:ENSG00000207729 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384996 ncrna:miRNA chromosome:GRCh37:1:162312336:162312430:1 gene:ENSG00000207729 gene_biotype:miRNA transcript_biotype:miRNA	chr1	162312336	162312430	+	ENSG00000207729	ENST00000384996	NA	NA	NOS1AP	NA	chr1:162302336-162322430	inner
CUST_44992_PI429285431	1.7110865	A	0.9018288	A	1.75230960678187	0	lncRNA	49501-1_{1..495}	"gi|410170522|ref|XR_171046.1| PREDICTED: Homo sapiens uncharacterized LOC101059910 (LOC101059910), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170522|ref|XR_171046.1| PREDICTED: Homo sapiens uncharacterized LOC101059910 (LOC101059910), misc_RNA"	NA	NA	NA	NA	NA	XR_171046.1	NA	NA	NA	NA	NA	Unknown
CUST_3182_PI429285431	0.91024035	A	0.90626204	A	1.00276135991012	0	lncRNA	3161-1_{1..542}	"transcript_id ""ENST00000522703.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522703.1"" | genecode_v17"	chr8	 74332239	 74332780	+	ENSG00000253302.1	ENST00000522703.1	STAU2-AS1	STAU2-AS1-002	STAU2	NA	chr8:74332604-74361472	inner
CUST_43622_PI429285431	13.374627	P	13.098487	P	1.21095058962723	0	lncRNA	48383-1_{1..3000}	"gi|375298684|ref|NR_046329.1| Homo sapiens tripartite motif containing 46 (TRIM46), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375298684|ref|NR_046329.1| Homo sapiens tripartite motif containing 46 (TRIM46), transcript variant 7, non-coding RNA"	Chr1	155147230	155150229	+	80128	NR_046329.1	NA	NA	NA	NA	NA	inter
CUST_37396_PI429285431	3.8236322	P	4.3447165	P	0.696847899723443	0	lncRNA	38501-1_{1..2515}	n345849|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1398|NULL|-1.6705900|-0.1359676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n345849|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1398|NULL|-1.6705900|-0.1359676	chr17	 36606297	 36608811	-	NA	NA	NA	NA	ARHGAP23	NA	chr17:36596297-36619907	inner
CUST_50737_PI429285431	0.8953708	A	1.4845946	A	0.664700433547914	0	lncRNA	54405-1_{1..472}	hg19_lincRNAsTranscripts_TCONS_l2_00004050 range=chr10:124556207-124560334 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004050 range=chr10:124556207-124560334 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	124556207	124556678	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001192	2.6308687	A	2.9301662	A	0.812648007514107	0	lncRNA	ENST00000457405	NA	NA	NA	NA	XLOC_001085	NA	ENST00000457405	NA	NA	"BROAD Institute lincRNA (XLOC_001085), lincRNA [TCONS_00000674]"	chr1:168732664-168732605	hs|1q24.2	Agilent_HUMAN_G3V2	ENST00000457405	ENST00000457405	chr1	168732605	168732664	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005547	7.7105823	P	7.7972145	P	0.941718515219199	0	lncRNA	TCONS_00014019	NA	NA	NA	NA	XLOC_006663	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006663), lincRNA [TCONS_00014019]"	chr7:155056392-155056333	hs|7q36.2	Agilent_HUMAN_G3V2	TCONS_00014019	TCONS_00014019	chr7	155056333	155056392	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15872_PI429285431	0.9062732	A	0.9000207	A	1.00434330768475	0	lncRNA	17562-1_{1..1221}	lnc-DHRS2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHRS2-2:1	chr14	 24088412	 24089632	+	lnc-DHRS2-2	lnc-DHRS2-2:1	XLOC_010767	linc-DHRS2-2	NA	NA	NA	inter
CUST_111_PI429285431	10.086734	P	9.6391115	P	1.36379093447755	0	lncRNA	103-1_{1..426}	"transcript_id ""ENST00000412666.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412666.1"" | genecode_v17"	chr1	   453827	   454252	-	ENSG00000236601.1	ENST00000412666.1	RP4-669L17.2	RP4-669L17.2-001	NA	NA	NA	inter
CUST_38895_PI429285431	6.949313	P	6.870264	P	1.05632150186986	0	lncRNA	39882-1_{1..2516}	n384856|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003noi.2||7.2381800|-0.1724456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384856|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003noi.2||7.2381800|-0.1724456	chr6	 29894105	 29896620	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47680_PI429285431	0.9307229	A	2.2318041	A	0.405821948745464	0	lncRNA	51660-2_{3001..5806}	"gi|385137075|ref|NR_047613.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 43, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137075|ref|NR_047613.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 43, non-coding RNA"	ChrY	 15363259	 15366064	-	7404	NR_047613.1	NA	NA	NA	NA	NA	inter
CUST_28020_PI429285431	3.7171295	P	4.0165577	P	0.812574389541795	0	lncRNA	29630-1_{1..765}	n325276|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328221|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328221|-1.1528600|-0.3060043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325276|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328221|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328221|-1.1528600|-0.3060043	chr2	 66777760	 66778524	-	NA	NA	NA	NA	MEIS1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr2:66767760-66793863"	NA	inner
CUST_2378_PI429285431	1.0635071	A	1.3339181	A	0.829083320016914	0	lncRNA	2371-1_{1..501}	"transcript_id ""ENST00000603314.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603314.1"" | genecode_v17"	chr5	137081340	137081840	-	ENSG00000270237.1	ENST00000603314.1	RP11-381K20.5	RP11-381K20.5-001	KLHL3	NA	chr5:137071340-137071779	inter
CUST_28206_PI429285431	1.0077589	A	1.4810305	A	0.720329253351148	0	lncRNA	29835-1_{1..555}	n325489|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322441|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322441|0.2222230|-0.2364535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325489|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322441|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322441|0.2222230|-0.2364535	chr2	  1555332	  1555886	+	NA	NA	NA	NA	TPO	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90chr2:1545332-1546499"	NA	inter
CUST_16383_PI429285431	0.9769278	A	1.041677	A	0.956111514828353	0	lncRNA	18081-1_{1..1255}	lnc-HS3ST1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HS3ST1-1:1	chr4	 11770927	 11772181	-	lnc-HS3ST1-1	lnc-HS3ST1-1:1	XLOC_003882	linc-HS3ST1-2	NA	NA	NA	inter
CUST_39602_PI429285431	9.9288225	P	9.590308	P	1.26445395296547	0	lncRNA	40545-2_{3001..3292}	n387628|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kdy.1||1.8749000|-0.2899700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387628|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kdy.1||1.8749000|-0.2899700	chr7	 66021552	 66021843	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41363_PI429285431	0.9188547	A	0.9037897	A	1.01049697296447	0	lncRNA	42439-1_{1..80}	ENST00000585040 ncrna:miRNA chromosome:GRCh37:21:41584279:41584358:-1 gene:ENSG00000263973 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585040 ncrna:miRNA chromosome:GRCh37:21:41584279:41584358:-1 gene:ENSG00000263973 gene_biotype:miRNA transcript_biotype:miRNA	chr21	 41584279	 41584358	-	ENSG00000263973	ENST00000585040	NA	NA	DSCAM	NA	chr21:41574279-41594358	inter
CUST_42335_PI429285431	1.2289641	A	2.460096	A	0.425983099777973	0	lncRNA	44991-1_{1..72}	ENST00000517074 ncrna:snoRNA chromosome:GRCh37:12:62511668:62511739:-1 gene:ENSG00000252883 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517074 ncrna:snoRNA chromosome:GRCh37:12:62511668:62511739:-1 gene:ENSG00000252883 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 62511668	 62511739	-	ENSG00000252883	ENST00000517074	NA	NA	FAM19A2	NA	chr12:62501668-62521739	inner
CUST_34123_PI429285431	4.5686226	P	4.603047	P	0.97642125124613	0	lncRNA	35645-1_{1..521}	n340957|AF309699|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3422|NULL|3.1859400|-0.1148323	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n340957|AF309699|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3422|NULL|3.1859400|-0.1148323	chr11	  7870603	  7871123	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46997_PI429285431	7.034944	P	7.17458	P	0.907748156346212	0	lncRNA	51096-1_{1..1185}	"gi|224586868|ref|NR_026978.1| Homo sapiens HAUS augmin-like complex, subunit 1 (HAUS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224586868|ref|NR_026978.1| Homo sapiens HAUS augmin-like complex, subunit 1 (HAUS1), transcript variant 2, non-coding RNA"	Chr18	 43684298	 43685482	+	115106	NR_026978.1	NA	NA	NA	NA	NA	inter
CUST_5313_PI429285431	1.2230729	A	1.5584514	A	0.792576172052155	0	lncRNA	5253-1_{1..578}	"transcript_id ""ENST00000553478.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553478.1"" | genecode_v17"	chr15	 93856435	 93857012	+	ENSG00000257060.2	ENST00000553478.1	RP11-266O8.1	RP11-266O8.1-005	NA	NA	NA	inter
LNCA_21_P0005558	0.96623135	A	1.5804647	A	0.653276953535436	0	lncRNA	TCONS_00014121	NA	NA	NA	NA	XLOC_006072	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006072), lincRNA [TCONS_00014121]"	chr7:45231971-45232030	hs|7p13	Agilent_HUMAN_G3V2	TCONS_00014121	TCONS_00014121	chr7	 45231971	 45232030	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17836_PI429285431	0.91215324	A	0.9158562	A	0.997436594864785	0	lncRNA	19571-1_{1..2409}	lnc-DYRK2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DYRK2-2:4	chr12	 68363592	 68366000	+	lnc-DYRK2-2	lnc-DYRK2-2:4	XLOC_009793	linc-RAP1B-4	NA	NA	NA	inter
CUST_51958_PI429285431	3.6484327	P	4.463508	P	0.568378819889511	0	lncRNA	55501-1_{1..349}	hg19_lincRNAsTranscripts_TCONS_l2_00016226 range=chr20:25990492-26031572 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016226 range=chr20:25990492-26031572 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 25990492	 25990840	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15382_PI429285431	3.7278256	P	3.425567	P	1.23307333141277	0	lncRNA	17065-1_{1..2483}	lnc-CEBPB-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEBPB-7:3	chr20	 48929837	 48932319	+	lnc-CEBPB-7	lnc-CEBPB-7:3	XLOC_013560	linc-PTPN1-2	NA	NA	NA	inter
CUST_41825_PI429285431	0.9083138	A	1.212087	A	0.810130820869966	0	lncRNA	43425-1_{1..78}	ENST00000408109 ncrna:miRNA chromosome:GRCh37:14:101496389:101496466:1 gene:ENSG00000221036 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408109 ncrna:miRNA chromosome:GRCh37:14:101496389:101496466:1 gene:ENSG00000221036 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101496389	101496466	+	ENSG00000221036	ENST00000408109	NA	NA	NA	NA	NA	inter
CUST_46395_PI429285431	9.836768	P	9.717393	P	1.08626417248515	0	lncRNA	50612-1_{1..1687}	"gi|381140023|ref|NR_046464.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|381140023|ref|NR_046464.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 7, non-coding RNA"	Chr14	101292445	101294131	+	55384	NR_046464.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004865	1.9194648	A	0.9172447	A	2.00308008140426	0	lncRNA	TCONS_00011753	NA	NA	NA	NA	XLOC_005215	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005215), lincRNA [TCONS_00011753]"	chr6:26724417-26728104	hs|6p22.2	Agilent_HUMAN_G3V2	TCONS_00011753	TCONS_00011753	chr6	 26724417	 26728104	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27299_PI429285431	0.92918825	A	0.91442204	A	1.01028771520808	0	lncRNA	28857-1_{1..265}	n324451|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041548|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041548|-1.2649100|-0.2634313	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324451|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041548|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041548|-1.2649100|-0.2634313	chr6	 94930358	 94930622	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5984_PI429285431	1.03672	A	1.7859232	A	0.594932047556138	0	lncRNA	5912-1_{1..3000}	"transcript_id ""ENST00000592572.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592572.1"" | genecode_v17"	chr17	 75524207	 75527206	+	ENSG00000267665.1	ENST00000592572.1	RP11-13K12.2	RP11-13K12.2-001	NA	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70"	NA	inter
CUST_40364_PI429285431	8.40898	P	7.9364142	P	1.38757504532849	0	lncRNA	41163-1_{1..1070}	n409111|NR_033244|lncRNA|Homosapiens||RefGeneNoncode|NR_033244||2.0863100|-0.3254370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409111|NR_033244|lncRNA|Homosapiens||RefGeneNoncode|NR_033244||2.0863100|-0.3254370	chr5	141275190	141276259	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49995_PI429285431	1.8473816	A	2.0783608	A	0.852056379476235	0	lncRNA	53732-1_{1..685}	hg19_lincRNAsTranscripts_TCONS_l2_00027542 range=chr8:687570-982857 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027542 range=chr8:687570-982857 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	   687570	   688254	+	NA	NA	NA	NA	ERICH1	NA	chr8:677570-681226	inter
CUST_1914_PI429285431	0.9134508	A	0.9115342	A	1.00132936871453	0	lncRNA	1905-1_{1..567}	"transcript_id ""ENST00000502757.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502757.1"" | genecode_v17"	chr4	139230865	139231431	+	ENSG00000251372.1	ENST00000502757.1	LINC00499	LINC00499-002	NA	NA	NA	inter
CUST_25973_PI429285431	3.470653	P	4.0589557	P	0.665124952273824	0	lncRNA	27493-1_{1..544}	lnc-AMZ1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AMZ1-1:1	chr7	  2814923	  2815466	+	lnc-AMZ1-1	lnc-AMZ1-1:1	ENSG00000233202.1	AC006028.10	GNA12	NA	chr7:2804923-2825134	inner
CUST_4279_PI429285431	0.9046078	A	0.8952294	A	1.00652178635147	0	lncRNA	4235-1_{1..348}	"transcript_id ""ENST00000547088.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547088.1"" | genecode_v17"	chr12	 59759999	 59760346	-	ENSG00000258214.1	ENST00000547088.1	RP11-272B17.1	RP11-272B17.1-001	NA	NA	NA	inter
CUST_50816_PI429285431	0.91794246	A	0.9056878	A	1.00853046181487	0	lncRNA	54467-1_{1..704}	hg19_lincRNAsTranscripts_TCONS_l2_00004520 range=chr11:50257776-50313168 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004520 range=chr11:50257776-50313168 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 50257776	 50258479	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49494_PI429285431	1.7566502	A	2.0978477	A	0.789385815094367	0	lncRNA	53286-1_{1..355}	hg19_lincRNAsTranscripts_TCONS_l2_00024614 range=chr6:11990575-12001446 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024614 range=chr6:11990575-12001446 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 11990575	 11990929	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4988_PI429285431	2.8172343	A	3.6782596	P	0.550561143980735	0	lncRNA	4932-1_{1..429}	"transcript_id ""ENST00000555428.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555428.1"" | genecode_v17"	chr14	100757454	100757882	+	ENSG00000258504.2	ENST00000555428.1	RP11-638I2.6	RP11-638I2.6-002	SLC25A29	NA	chr14:100757453-100768287	inner
CUST_21465_PI429285431	0.9374457	A	0.91660666	A	1.01454934804031	0	lncRNA	23084-1_{1..638}	lnc-ANKH-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKH-1:3	chr5	 14663988	 14664625	-	lnc-ANKH-1	lnc-ANKH-1:3	ENSG00000261360.1	CTD-2165H16.4	FAM105B	NA	chr5:14653988-14674384	inter
LNCA_21_P0009622	0.9262918	A	0.9093682	A	1.01179961829774	0	lncRNA	TCONS_00026676	NA	NA	NA	NA	XLOC_012769	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012769), lincRNA [TCONS_00026676]"	chr18:11490538-11490479	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_00026676	TCONS_00026676	chr18	 11490479	 11490538	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34717_PI429285431	0.92166907	A	0.91129476	A	1.00721684050339	0	lncRNA	36164-1_{1..826}	n341624|BC029463|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4095|NULL|-1.0398400|-0.1852950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341624|BC029463|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4095|NULL|-1.0398400|-0.1852950	chr8	142350647	142351472	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7154_PI429285431	1.1242449	A	1.4743671	A	0.784517644409575	0	lncRNA	7107-1_{1..286}	"transcript_id ""ENST00000481521.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000481521.2"" | genecode_v17"	chr1	 19750878	 19751163	+	ENSG00000240490.2	ENST00000481521.2	RN7SL277P	RN7SL277P-201	CAPZB	NA	chr1:19740878-19761163	inter
CUST_27229_PI429285431	0.91334766	A	0.90402126	A	1.00648550828288	0	lncRNA	28774-1_{1..956}	n324365|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042469|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042469|-0.8869700|-0.4196080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324365|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042469|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042469|-0.8869700|-0.4196080	chr6	140217748	140218703	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35934_PI429285431	2.9635856	P	3.2826865	P	0.801569266846286	0	lncRNA	37297-1_{1..2828}	n344572|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_120|NULL|-1.3721100|-0.1495109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344572|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_120|NULL|-1.3721100|-0.1495109	chr9	132251001	132253828	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30"	NA	inter
CUST_4360_PI429285431	1.058598	A	0.89498144	A	1.12009147631938	0	lncRNA	4315-1_{1..1495}	"transcript_id ""ENST00000605595.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605595.1"" | genecode_v17"	chr12	 89761584	 89763078	+	ENSG00000271327.1	ENST00000605595.1	RP11-1109F11.3	RP11-1109F11.3-001	NA	NA	NA	inter
CUST_1158_PI429285431	1.7503264	A	2.6206234	A	0.547034223994523	0	lncRNA	1147-1_{1..317}	"transcript_id ""ENST00000604994.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604994.1"" | genecode_v17"	chr2	174675804	174676120	+	ENSG00000270460.1	ENST00000604994.1	RP11-796E10.1	RP11-796E10.1-001	NA	NA	NA	inter
CUST_24391_PI429285431	6.484059	P	6.305976	P	1.13137955061488	0	lncRNA	25944-1_{1..478}	lnc-C17orf97-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf97-6:1	chr17	   443629	   444106	+	lnc-C17orf97-6	lnc-C17orf97-6:1	ENSG00000263300.1	RP5-1029F21.4	VPS53	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.40chr17:433629-453816"	NA	inner
CUST_10449_PI429285431	2.4289327	A	3.8019004	P	0.386096210623572	0	lncRNA	11975-1_{1..1482}	lnc-SSTR4-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SSTR4-2:3	chr20	 23170420	 23171901	+	lnc-SSTR4-2	lnc-SSTR4-2:3	XLOC_013489	linc-NXT1	NA	NA	NA	inter
CUST_7254_PI429285431	1.3321024	A	1.643167	A	0.806046738081947	0	lncRNA	7997-1_{1..286}	"transcript_id ""ENST00000479724.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000479724.2"" | genecode_v17"	chr8	118176207	118176492	+	ENSG00000240151.2	ENST00000479724.2	RN7SL826P	RN7SL826P-201	SLC30A8	NA	chr8:118166207-118186492	inner
CUST_1951_PI429285431	0.9234035	A	0.9262176	A	0.998051315674722	0	lncRNA	1944-1_{1..463}	"transcript_id ""ENST00000605407.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605407.1"" | genecode_v17"	chr4	153239054	153239516	-	ENSG00000270883.1	ENST00000605407.1	RP11-461L13.5	RP11-461L13.5-001	FBXW7	NA	chr4:153242410-153249516	inter
CUST_47974_PI429285431	3.1643965	A	3.4249206	P	0.83478460509108	0	lncRNA	51865-1_{1..3000}	"gi|410172808|ref|XR_171995.1| PREDICTED: Homo sapiens uncharacterized LOC100996347 (LOC100996347), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172808|ref|XR_171995.1| PREDICTED: Homo sapiens uncharacterized LOC100996347 (LOC100996347), misc_RNA"	NA	NA	NA	NA	NA	XR_171995.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70"	NA	Unknown
CUST_15706_PI429285431	0.89770025	A	0.8918512	A	1.00406248211605	0	lncRNA	17394-1_{1..378}	lnc-BORA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BORA-1:1	chr13	 72747646	 72748023	+	lnc-BORA-1	lnc-BORA-1:1	XLOC_010424	linc-C13orf34-1	NA	NA	NA	inter
LNCA_21_P0005671	0.9229874	A	0.9077381	A	1.01062606919258	0	lncRNA	TCONS_00014648	NA	NA	NA	NA	XLOC_006737	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006737), lincRNA [TCONS_00014648]"	chr8:21540574-21540633	hs|8p21.3	Agilent_HUMAN_G3V2	TCONS_00014648	TCONS_00014648	chr8	 21540574	 21540633	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47189_PI429285431	4.715193	P	3.1648211	A	2.92892631741754	0	lncRNA	51264-1_{1..3000}	"gi|291621684|ref|NR_033418.1| Homo sapiens zinc finger protein 542 (ZNF542), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|291621684|ref|NR_033418.1| Homo sapiens zinc finger protein 542 (ZNF542), transcript variant 1, non-coding RNA"	Chr19	 56879490	 56882489	+	147947	NR_033418.1	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60"	NA	inter
CUST_1773_PI429285431	9.18996	P	9.12092	P	1.04901841213793	0	lncRNA	1759-1_{1..422}	"transcript_id ""ENST00000602434.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602434.1"" | genecode_v17"	chr4	 57330324	 57330745	+	ENSG00000270109.1	ENST00000602434.1	RP11-393M11.2	RP11-393M11.2-001	SRP72	NA	chr4:57333762-57340745	inter
CUST_47538_PI429285431	0.9035115	A	1.3410857	A	0.738375096239039	0	lncRNA	51548-1_{1..693}	"gi|410170770|ref|XR_109737.3| PREDICTED: Homo sapiens uncharacterized LOC642757 (FLJ32756), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170770|ref|XR_109737.3| PREDICTED: Homo sapiens uncharacterized LOC642757 (FLJ32756), misc_RNA"	Chr22	 47311203	 47311895	-	642757	XR_109737.4	NA	NA	NA	NA	NA	inter
CUST_51579_PI429285431	3.232733	P	2.9374137	A	1.22715654381232	0	lncRNA	55144-1_{1..643}	hg19_lincRNAsTranscripts_TCONS_l2_00011133 range=chr17:20279090-20279890 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011133 range=chr17:20279090-20279890 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 20279090	 20279732	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21555_PI429285431	5.890401	P	6.076087	P	0.879230903124756	0	lncRNA	23171-1_{1..380}	lnc-MTERF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTERF-1:1	chr7	 91509971	 91510350	-	lnc-MTERF-1	lnc-MTERF-1:1	ENSG00000242870.1	CTB-104F4.2	MTERF	NA	chr7:91502021-91510016	inner
CUST_18383_PI429285431	3.0634003	P	3.4726467	P	0.753016613522826	0	lncRNA	20109-2_{3001..5934}	lnc-MST1P9-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MST1P9-2:2	chr1	 16974141	 16977074	-	lnc-MST1P9-2	lnc-MST1P9-2:2	ENSG00000215908	CROCCP2	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90"	NA	inter
CUST_49985_PI429285431	7.12055	P	6.8260694	P	1.22644335283396	0	lncRNA	53724-1_{1..2827}	hg19_lincRNAsTranscripts_TCONS_l2_00026281 range=chr7:150105207-150109561 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026281 range=chr7:150105207-150109561 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	150105207	150108033	+	NA	NA	NA	NA	ZNF775	NA	chr7:150095207-150095719	inter
CUST_45968_PI429285431	8.32914	P	7.7190375	P	1.52636764984516	0	lncRNA	50261-1_{1..2518}	"gi|209977005|ref|NR_024260.1| Homo sapiens NECAP endocytosis associated 1 (NECAP1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209977005|ref|NR_024260.1| Homo sapiens NECAP endocytosis associated 1 (NECAP1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_024260.1	NA	NA	NA	NA	NA	Unknown
CUST_40202_PI429285431	12.392026	P	11.917989	P	1.38899075798434	0	lncRNA	41033-1_{1..1586}	n408034|NR_027811|lncRNA|Homosapiens||RefGeneNoncode|NR_027811||5.7535500|-0.0546208	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408034|NR_027811|lncRNA|Homosapiens||RefGeneNoncode|NR_027811||5.7535500|-0.0546208	chr9	130882971	130884556	-	NA	NA	NA	NA	PTGES2	NA	chr9:130882972-130890712	inner
CUST_34959_PI429285431	0.92288566	A	0.91587347	A	1.00487231102046	0	lncRNA	36376-1_{1..1263}	n341879|CR592608|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4359|NULL|-1.3167700|-0.2513487	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341879|CR592608|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4359|NULL|-1.3167700|-0.2513487	chr6	 52149127	 52150389	+	NA	NA	NA	NA	MCM3	"hg19_refFlat_MCM3:range=chr6:52129386-521496075'pad=0,hg19_refFlat_MCM3:range=chr6:52129386-521496075'pad=0 3'pad=0 strand=- repeatMasking=none,-95.30;hg19_refFlat_MCM3:range=chr6:52129386-521496155'pad=0,hg19_refFlat_MCM3:range=chr6:52129386-521496155'pad=0 3'pad=0 strand=- repeatMasking=none,-95.30chr6:52139127-52149582"	NA	inner
CUST_23188_PI429285431	0.9263597	A	1.0054891	A	0.946628721226871	0	lncRNA	24760-1_{1..385}	lnc-SLC6A4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC6A4-2:1	chr17	 28444410	 28444794	-	lnc-SLC6A4-2	lnc-SLC6A4-2:1	ENSG00000265394.1	RP11-1148O4.2	EFCAB5	"hg19_refFlat_EFCAB5:range=chr17:28268815-284350425'pad=0,hg19_refFlat_EFCAB5:range=chr17:28268815-284350425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00chr17:28434410-28435470"	NA	inner
CUST_9289_PI429285431	4.554711	P	4.7293158	P	0.886010192199336	0	lncRNA	10795-1_{1..982}	lnc-AC069257.9.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC069257.9.1-2:2	chr3	195886771	195887752	+	lnc-AC069257.9.1-2	lnc-AC069257.9.1-2:2	XLOC_003002	linc-OSTalpha-1	NA	NA	NA	inter
CUST_24942_PI429285431	0.9211648	A	0.9186382	A	1.00175284009779	0	lncRNA	26482-1_{1..348}	lnc-RNF125-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF125-3:1	chr18	 29425011	 29425358	+	lnc-RNF125-3	lnc-RNF125-3:1	ENSG00000263924.1	RP11-210K20.2	TRAPPC8	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-30.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90chr18:29415011-29435141"	NA	inner
CUST_6842_PI429285431	0.9173023	A	0.9123026	A	1.00347153984344	0	lncRNA	6790-1_{1..683}	"transcript_id ""ENST00000430247.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430247.1"" | genecode_v17"	chr21	 29816870	 29817552	-	ENSG00000232855.1	ENST00000430247.1	AF131217.1	AF131217.1-002	NA	NA	NA	inter
CUST_45734_PI429285431	0.922266	A	0.911991	A	1.0071475096615	0	lncRNA	50085-29_{84001..87000}	"gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	Chr11	  2713558	  2716557	-	10984	NR_002728.3	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.02;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0,hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_18628_PI429285431	1.1354264	M	0.8970569	A	1.17965868525924	0	lncRNA	20333-1_{1..387}	lnc-METAP1-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-METAP1-3:6	chr4	100196119	100196505	+	lnc-METAP1-3	lnc-METAP1-3:6	ENSG00000246090	RP11-696N14.1	ADH1A	NA	chr4:100197523-100206208	inter
CUST_46286_PI429285431	3.9218712	P	4.3639994	P	0.736048021869808	0	lncRNA	50522-1_{1..3000}	"gi|223634007|ref|NR_026862.1| Homo sapiens protein phosphatase 1, regulatory subunit 3E (PPP1R3E), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223634007|ref|NR_026862.1| Homo sapiens protein phosphatase 1, regulatory subunit 3E (PPP1R3E), non-coding RNA"	NA	NA	NA	NA	NA	NR_026862.1	NA	NA	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10"	NA	Unknown
CUST_49128_PI429285431	0.9217576	A	0.90945053	A	1.00856710021738	0	lncRNA	52955-1_{1..900}	hg19_lincRNAsTranscripts_TCONS_l2_00021187 range=chr4:80508539-80521036 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021187 range=chr4:80508539-80521036 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 80508539	 80509438	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.10;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.10"	NA	inter
CUST_18553_PI429285431	0.91231084	A	0.9139495	A	0.998864812254748	0	lncRNA	20264-1_{1..445}	lnc-NKAIN3-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKAIN3-3:2	chr8	 64081946	 64082390	+	lnc-NKAIN3-3	lnc-NKAIN3-3:2	ENSG00000185728	YTHDF3	YTHDF3	NA	chr8:64081121-64092050	inner
CUST_12915_PI429285431	0.91922474	A	0.9224179	A	0.997789117757317	0	lncRNA	14543-1_{1..300}	lnc-ADD3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADD3-3:1	chr10	110540684	110540983	+	lnc-ADD3-3	lnc-ADD3-3:1	XLOC_008608	linc-ADD3-3	NA	NA	NA	inter
CUST_15464_PI429285431	0.91178	A	1.1506233	A	0.847424473942523	0	lncRNA	17152-1_{1..531}	lnc-EMX2-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EMX2-5:5	chr10	120007211	120007741	+	lnc-EMX2-5	lnc-EMX2-5:5	XLOC_008636	linc-NANOS1-3	NA	NA	NA	inter
CUST_1940_PI429285431	2.8660486	A	3.2349842	P	0.774353593202776	0	lncRNA	1932-1_{1..499}	"transcript_id ""ENST00000510975.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510975.1"" | genecode_v17"	chr4	150658766	150659264	-	ENSG00000234828.3	ENST00000510975.1	RP11-526A4.1	RP11-526A4.1-004	LOC285423	NA	chr4:150648766-150736980	inter
CUST_50716_PI429285431	2.8276334	A	3.382378	P	0.680777565492134	0	lncRNA	54385-1_{1..1014}	hg19_lincRNAsTranscripts_TCONS_l2_00003697 range=chr10:89147718-89151064 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003697 range=chr10:89147718-89151064 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 89147718	 89148731	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15456_PI429285431	5.1138673	P	5.092103	P	1.01520022919546	0	lncRNA	17144-1_{1..665}	lnc-VN1R2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VN1R2-1:1	chr19	 53727399	 53728063	+	lnc-VN1R2-1	lnc-VN1R2-1:1	XLOC_013142	linc-VN1R2	NA	"hg19_refFlat_NDUFV2:range=chr18:9102742-91342775'pad=0,hg19_refFlat_NDUFV2:range=chr18:9102742-91342775'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70"	NA	inter
CUST_21113_PI429285431	1.1388979	A	1.5729439	A	0.7401830480573	0	lncRNA	22738-1_{1..569}	lnc-CTAGE4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTAGE4-1:2	chr7	143977565	143978133	+	lnc-CTAGE4-1	lnc-CTAGE4-1:2	ENSG00000244198.1	RP4-545C24.1	NA	NA	NA	inter
CUST_32856_PI429285431	6.3919353	P	6.496395	P	0.930153226678276	0	lncRNA	34488-1_{1..3000}	n339520|AK126748|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1961|NULL|-0.8176490|-0.1864722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339520|AK126748|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1961|NULL|-0.8176490|-0.1864722	chr3	126691907	126694906	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47960_PI429285431	6.4274216	P	6.6157274	P	0.877635750350417	0	lncRNA	51851-1_{1..1240}	"gi|410172601|ref|XR_171880.1| PREDICTED: Homo sapiens uncharacterized LOC100131262 (LOC100131262), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172601|ref|XR_171880.1| PREDICTED: Homo sapiens uncharacterized LOC100131262 (LOC100131262), misc_RNA"	NA	NA	NA	NA	NA	XR_171880.1	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70"	NA	Unknown
CUST_35109_PI429285431	1.7159871	A	2.147028	A	0.741726438885868	0	lncRNA	36515-1_{1..1758}	n342078|CR625798|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4559|NULL|-1.2684100|-0.2009838	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342078|CR625798|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4559|NULL|-1.2684100|-0.2009838	chr6	 84562077	 84563834	-	NA	NA	NA	NA	CYB5R4	"hg19_refFlat_RIPPLY2:range=chr6:84563136-845671085'pad=0,hg19_refFlat_RIPPLY2:range=chr6:84563136-845671085'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.00chr6:84569370-84573835"	NA	inner
CUST_13449_PI429285431	1.5248225	A	2.1522565	A	0.647326737500866	0	lncRNA	15087-1_{1..615}	lnc-RAN-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAN-3:1	chr12	131246734	131247348	+	lnc-RAN-3	lnc-RAN-3:1	XLOC_009955	linc-RAN-2	NA	NA	NA	inter
CUST_36847_PI429285431	0.92207456	A	1.0225501	A	0.932725496619906	0	lncRNA	38012-1_{1..1113}	n345320|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_869|NULL|-1.3426700|-0.4202262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345320|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_869|NULL|-1.3426700|-0.4202262	chr15	 96812508	 96813620	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2834_PI429285431	14.49169	P	14.908133	P	0.749269691651238	0	lncRNA	2818-1_{1..437}	"transcript_id ""ENST00000412800.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412800.1"" | genecode_v17"	chr7	 53626907	 53627343	-	ENSG00000228627.1	ENST00000412800.1	GS1-278J22.2	GS1-278J22.2-001	NA	NA	NA	inter
CUST_3322_PI429285431	7.2387795	P	7.3504887	P	0.925490957859174	0	lncRNA	3301-1_{1..426}	"transcript_id ""ENST00000523317.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523317.1"" | genecode_v17"	chr8	135224108	135224533	-	ENSG00000253627.1	ENST00000523317.1	RP11-513H8.1	RP11-513H8.1-001	NA	NA	NA	inter
CUST_30471_PI429285431	14.696669	P	14.629142	P	1.04791884996545	0	lncRNA	32251-1_{1..530}	n335616|CR599628|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000278823|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000278823|1.3171900|-0.1979410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335616|CR599628|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000278823|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000278823|1.3171900|-0.1979410	chr2	176042872	176043401	-	NA	NA	NA	NA	ATF2	NA	chr2:176032872-176032897	inner
LNCA_21_P0006235	0.9527259	A	0.9252289	A	1.01924225913818	0	lncRNA	TCONS_00016205	NA	NA	NA	NA	XLOC_007595	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007595), lincRNA [TCONS_00016205]"	chr9:136619649-136619708	hs|9q34.2	Agilent_HUMAN_G3V2	TCONS_00016205	TCONS_00016205	chr9	136619649	136619708	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20370_PI429285431	6.1117754	P	6.069806	P	1.02951824680771	0	lncRNA	22011-1_{1..375}	lnc-BAZ2B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BAZ2B-1:2	chr2	160568432	160568806	-	lnc-BAZ2B-1	lnc-BAZ2B-1:2	ENSG00000226266.1	AC009961.3	7-Mar	NA	chr2:160569010-160578529	inter
CUST_25720_PI429285431	4.7794013	P	5.2144	P	0.739694421156351	0	lncRNA	27248-1_{1..2159}	lnc-FES-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FES-2:3	chr15	 91578148	 91580306	+	lnc-FES-2	lnc-FES-2:3	ENSG00000214432.5	AC068831.10	SV2B	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30chr15:91575177-91589841"	NA	inter
CUST_16584_PI429285431	5.6628456	P	5.52266	P	1.10204688301341	0	lncRNA	18285-1_{1..630}	lnc-GADD45G-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GADD45G-4:1	chr9	 92522698	 92523327	+	lnc-GADD45G-4	lnc-GADD45G-4:1	XLOC_007450	linc-SYK-3	NA	NA	NA	inter
CUST_28768_PI429285431	1.3672631	A	0.90836847	A	1.37448830351582	0	lncRNA	30476-1_{1..2535}	n326174|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092804|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092804|-0.2889790|-0.3557423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326174|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092804|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092804|-0.2889790|-0.3557423	chr1	232911627	232914161	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00"	NA	inter
CUST_5833_PI429285431	1.2757373	A	1.1330827	A	1.1039345192076	0	lncRNA	5762-1_{1..455}	"transcript_id ""ENST00000591939.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591939.1"" | genecode_v17"	chr17	 35078894	 35079348	+	ENSG00000267785.1	ENST00000591939.1	CTD-3194G12.2	CTD-3194G12.2-001	NA	NA	NA	inter
CUST_45801_PI429285431	0.92526585	A	0.92152226	A	1.00259822841379	0	lncRNA	50141-1_{1..1007}	"gi|346227196|ref|NR_038174.2| Homo sapiens tripartite motif-containing 51H, pseudogene (TRIM51HP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|346227196|ref|NR_038174.2| Homo sapiens tripartite motif-containing 51H, pseudogene (TRIM51HP), non-coding RNA"	Chr11	 55061179	 55062185	-	440041	NR_038174.2	NA	NA	NA	NA	NA	inter
CUST_52078_PI429285431	3.7233126	P	4.2029586	P	0.717153573334321	0	lncRNA	55607-1_{1..434}	hg19_lincRNAsTranscripts_TCONS_l2_00017541 range=chr22:17053606-17055481 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017541 range=chr22:17053606-17055481 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17053606	 17054039	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34106_PI429285431	1.5671496	A	2.9481049	A	0.383964463872911	0	lncRNA	35630-1_{1..3000}	n340933|AY312160|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3398|NULL|11.1573000|-0.0816604	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340933|AY312160|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3398|NULL|11.1573000|-0.0816604	chr11	  1018090	  1021089	-	NA	NA	NA	NA	AP2A2	NA	chr11:1008090-1012245	inner
CUST_10658_PI429285431	0.9175227	A	1.4857478	A	0.674446026879397	0	lncRNA	12191-1_{1..1285}	lnc-MRPL19-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPL19-3:1	chr2	 75574968	 75576252	+	lnc-MRPL19-3	lnc-MRPL19-3:1	XLOC_001539	linc-MRPL19-2	NA	NA	NA	inter
CUST_23537_PI429285431	3.05284	P	3.6990967	P	0.63893598504388	0	lncRNA	25104-1_{1..560}	lnc-INPPL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-INPPL1-2:1	chr11	 72063816	 72064375	+	lnc-INPPL1-2	lnc-INPPL1-2:1	ENSG00000256739.1	RP11-45F15.1	CLPB	NA	chr11:72053816-72074254	inner
CUST_37075_PI429285431	2.518513	A	2.9603744	A	0.736184153045148	0	lncRNA	38203-1_{1..431}	n345520|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1069|NULL|-1.7240000|-0.1992984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345520|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1069|NULL|-1.7240000|-0.1992984	chr2	 43306642	 43307072	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22931_PI429285431	0.9274439	A	0.91638154	A	1.00769731684121	0	lncRNA	24507-1_{1..551}	lnc-MT1X-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MT1X-1:1	chr16	 56721490	 56722040	+	lnc-MT1X-1	lnc-MT1X-1:1	ENSG00000259827.1	RP11-343H19.2	NUP93	NA	chr16:56720754-56731719	inter
CUST_11127_PI429285431	0.9155714	A	0.90816814	A	1.00514473774273	0	lncRNA	12685-1_{1..336}	lnc-IRF8-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRF8-4:3	chr16	 86233118	 86233453	+	lnc-IRF8-4	lnc-IRF8-4:3	XLOC_011812	linc-FOXF1-3	NA	NA	NA	inter
LNCA_21_P0014914	3.145028	P	2.8466775	A	1.2297375933612	0	lncRNA	XR_133034	XR_133034	XR_133034	NA	NA	LOC100505518	uncharacterized LOC100505518	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505518 (LOC100505518), miscRNA [XR_133034]"	chr13:78482701-78482760	hs|13q22.3	Agilent_HUMAN_G3V2	XR_133034	XR_133034	chr13	 78482701	 78482760	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21539_PI429285431	6.7097344	P	6.7560987	P	0.968373630918625	0	lncRNA	23157-1_{1..3000}	lnc-CTD-2517M22.14.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2517M22.14.1-1:3	chr8	145723360	145726359	-	lnc-CTD-2517M22.14.1-1	lnc-CTD-2517M22.14.1-1:3	ENSG00000261139.1	CTD-2517M14.5	MFSD3	"hg19_refFlat_PPP1R16A:range=chr8:145722578-1457272865'pad=0,hg19_refFlat_PPP1R16A:range=chr8:145722578-1457272865'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10chr8:145734552-145735663"	NA	inner
CUST_18304_PI429285431	4.0794053	P	4.030754	P	1.03429756114825	0	lncRNA	20034-1_{1..1857}	lnc-GPCPD1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GPCPD1-1:7	chr20	  5484944	  5486800	-	lnc-GPCPD1-1	lnc-GPCPD1-1:7	ENSG00000205181	RP5-1022P6.6	NA	NA	NA	inter
CUST_37076_PI429285431	8.258792	P	8.116846	P	1.10339243934767	0	lncRNA	38204-1_{1..2125}	n345521|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1070|NULL|-1.5723400|-0.1277302	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345521|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1070|NULL|-1.5723400|-0.1277302	chr2	 43324883	 43327007	+	NA	NA	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.51;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.59;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-23.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_32327_PI429285431	2.1161702	A	2.843269	A	0.604117548531611	0	lncRNA	34009-1_{1..1914}	n338906|BC032460|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1332|NULL|6.9832000|-0.0399636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338906|BC032460|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1332|NULL|6.9832000|-0.0399636	chr19	 51021067	 51022980	-	NA	NA	NA	NA	LRRC4B	NA	chr19:51020149-51062107	inner
CUST_49281_PI429285431	2.5706112	A	2.8034775	A	0.850942585916856	0	lncRNA	53100-1_{1..916}	hg19_lincRNAsTranscripts_TCONS_l2_00022724 range=chr5:766189-767576 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022724 range=chr5:766189-767576 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	   766189	   767104	-	NA	NA	NA	NA	ZDHHC11B	NA	chr5:756189-762215	inter
LNCA_21_P0002640	4.3198547	P	4.717217	P	0.759245153836956	0	lncRNA	TCONS_00005058	NA	NA	NA	NA	XLOC_001935	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001935), lincRNA [TCONS_00005058]"	chr2:748264-748205	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00005058	TCONS_00005058	chr2	   748205	   748264	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6237_PI429285431	0.9188744	A	0.9093652	A	1.00661304542853	0	lncRNA	6162-1_{1..189}	"transcript_id ""ENST00000578545.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578545.1"" | genecode_v17"	chr18	 62853395	 62853583	+	ENSG00000264131.1	ENST00000578545.1	AC007631.1	AC007631.1-001	NA	NA	NA	inter
CUST_18104_PI429285431	0.9019305	A	0.9005535	A	1.00095491931303	0	lncRNA	19838-1_{1..2068}	lnc-RP11-408E5.4.1-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-408E5.4.1-4:5	chr13	 19585823	 19587890	+	lnc-RP11-408E5.4.1-4	lnc-RP11-408E5.4.1-4:5	XLOC_010288	linc-MPHOSPH8-4	NA	NA	NA	inter
CUST_49737_PI429285431	0.92577744	A	1.1090753	A	0.880687527887095	0	lncRNA	53508-1_{1..2956}	hg19_lincRNAsTranscripts_TCONS_l2_00026511 range=chr7:38391053-38394123 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026511 range=chr7:38391053-38394123 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 38391053	 38394008	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45823_PI429285431	12.350432	P	12.313888	P	1.02565391042154	0	lncRNA	50157-1_{1..1680}	"gi|312032450|ref|NR_037193.1| Homo sapiens solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 (SLC3A2), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|312032450|ref|NR_037193.1| Homo sapiens solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 (SLC3A2), transcript variant 7, non-coding RNA"	Chr11	 62649171	 62650850	+	6520	NR_037193.1	NA	NA	NA	NA	NA	inter
CUST_32294_PI429285431	0.92481625	A	0.92065585	A	1.0028879315932	0	lncRNA	33978-1_{1..1453}	n338871|BC040730|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1297|NULL|0.1450130|-0.3095191	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338871|BC040730|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1297|NULL|0.1450130|-0.3095191	chr2	 68588345	 68589797	-	NA	NA	NA	NA	PLEK	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90chr2:68592322-68602716"	NA	inner
CUST_50546_PI429285431	3.6769056	P	2.9162145	P	1.69430205867761	0	lncRNA	54238-1_{1..426}	hg19_lincRNAsTranscripts_TCONS_l2_00030769 range=chrX:154578072-154579111 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030769 range=chrX:154578072-154579111 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	154578072	154578497	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6092_PI429285431	3.4582155	P	3.7523832	P	0.815542688509009	0	lncRNA	6018-1_{1..310}	"transcript_id ""ENST00000587889.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587889.1"" | genecode_v17"	chr18	 12738964	 12739273	-	ENSG00000266961.1	ENST00000587889.1	RP11-973H7.5	RP11-973H7.5-001	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-12.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
CUST_10507_PI429285431	2.0763118	A	1.1336808	A	1.92203019372376	0	lncRNA	12033-1_{1..3000}	lnc-HSBP1L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HSBP1L1-1:1	chr18	 77713276	 77716275	+	lnc-HSBP1L1-1	lnc-HSBP1L1-1:1	XLOC_012736	linc-HSBP1L1	HSBP1L1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr18:77724582-77726325"	NA	inter
CUST_51760_PI429285431	1.0256257	A	0.9542906	A	1.05068856290629	0	lncRNA	55312-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00012779 range=chr19:59086569-59117370 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012779 range=chr19:59086569-59117370 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 59089569	 59092568	+	NA	NA	NA	NA	MZF1	"hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr19:59076569-59084942"	NA	inter
CUST_51860_PI429285431	3.1616771	P	3.0260956	A	1.09853550587179	0	lncRNA	55412-1_{1..903}	hg19_lincRNAsTranscripts_TCONS_l2_00012636 range=chr19:51689126-51694217 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012636 range=chr19:51689126-51694217 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 51689126	 51690028	+	NA	NA	NA	NA	CD33	NA	chr19:51688070-51704217	inter
CUST_8315_PI429285431	3.0412154	A	3.5772743	P	0.689652304339355	0	lncRNA	9900-1_{1..411}	lnc-CCDC54-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC54-2:11	chr3	107004167	107004577	+	lnc-CCDC54-2	lnc-CCDC54-2:11	ENSG00000243701	XLOC_002746	NA	NA	NA	inter
CUST_2905_PI429285431	3.3673713	P	3.6758866	P	0.807472314150684	0	lncRNA	2886-1_{1..687}	"transcript_id ""ENST00000451962.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451962.1"" | genecode_v17"	chr7	112594701	112595387	-	ENSG00000234520.1	ENST00000451962.1	AC018464.3	AC018464.3-001	NA	NA	NA	inter
CUST_39943_PI429285431	2.8506923	P	1.755604	A	2.13626156176133	0	lncRNA	40818-1_{1..2602}	n406902|NR_024390|lncRNA|Homosapiens||RefGeneNoncode|NR_024390||0.4116400|-0.2637746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406902|NR_024390|lncRNA|Homosapiens||RefGeneNoncode|NR_024390||0.4116400|-0.2637746	chr7	 39649085	 39651686	+	NA	NA	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60"	NA	inter
CUST_27838_PI429285431	1.7585887	A	2.0115976	A	0.839144460400084	0	lncRNA	29426-1_{1..438}	n325068|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078007|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078007|-1.3028900|-0.5638140	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325068|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078007|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078007|-1.3028900|-0.5638140	chr20	 10681737	 10682174	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30"	NA	inter
CUST_19131_PI429285431	4.602359	P	5.572895	P	0.510316431353143	0	lncRNA	20811-1_{1..1158}	lnc-CTSZ-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-CTSZ-5:1	NA	NA	     1157	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42587_PI429285431	7.891278	P	8.015717	P	0.91736069467148	0	lncRNA	45432-1_{1..72}	ENST00000363742 ncrna:snoRNA chromosome:GRCh37:14:101452394:101452465:1 gene:ENSG00000200612 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363742 ncrna:snoRNA chromosome:GRCh37:14:101452394:101452465:1 gene:ENSG00000200612 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101452394	101452465	+	ENSG00000200612	ENST00000363742	NA	NA	NA	NA	NA	inter
LNCA_21_P0008148	2.6614866	A	2.603574	A	1.04095853339878	0	lncRNA	TCONS_00021981	NA	NA	NA	NA	XLOC_010584	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010584), lincRNA [TCONS_00021981]"	chr13:43424276-43424217	hs|13q14.11	Agilent_HUMAN_G3V2	TCONS_00021981	TCONS_00021981	chr13	 43424217	 43424276	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21649_PI429285431	4.0636454	P	4.5109825	P	0.733395286981428	0	lncRNA	23261-1_{1..553}	lnc-PPP4C-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP4C-3:1	chr16	 30121812	 30122364	+	lnc-PPP4C-3	lnc-PPP4C-3:1	ENSG00000261367.1	RP11-455F5.4	MAPK3	"hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-20.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40chr16:30125426-30131862"	NA	inner
CUST_22464_PI429285431	0.91637224	A	0.91339964	A	1.00206257349328	0	lncRNA	24052-1_{1..3000}	lnc-EIF2AK4-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF2AK4-1:6	chr15	 40213271	 40216270	+	lnc-EIF2AK4-1	lnc-EIF2AK4-1:6	ENSG00000246863.2	RP11-325N19.3	GPR176	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90chr15:40203271-40213093"	NA	inter
CUST_30297_PI429285431	1.2007384	A	0.93507624	A	1.20218769622225	0	lncRNA	32073-1_{1..423}	n335197|AY462278|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254817|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254817|1.0469400|-0.1436414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335197|AY462278|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254817|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254817|1.0469400|-0.1436414	chr7	 31126585	 31127007	+	NA	NA	NA	NA	ADCYAP1R1	NA	chr7:31116585-31151093	inner
CUST_27010_PI429285431	5.2346253	P	5.4211407	P	0.878725581824297	0	lncRNA	28540-1_{1..944}	n324115|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052438|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052438|-0.3380540|-0.2664960	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324115|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052438|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052438|-0.3380540|-0.2664960	chr9	 37102914	 37103857	-	NA	NA	NA	NA	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-61.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.22;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.02;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-21.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10"	NA	inter
CUST_51619_PI429285431	3.3470974	P	3.6311615	P	0.821274210125223	0	lncRNA	55188-1_{1..487}	hg19_lincRNAsTranscripts_TCONS_l2_00011224 range=chr17:40189766-40192254 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011224 range=chr17:40189766-40192254 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 40189766	 40190252	-	NA	NA	NA	NA	ZNF385C	NA	chr17:40179766-40190044	inner
CUST_20718_PI429285431	0.9696976	A	0.9267146	A	1.03024181369201	0	lncRNA	22353-1_{1..858}	lnc-TCTN3-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCTN3-1:6	chr10	 97849739	 97850596	-	lnc-TCTN3-1	lnc-TCTN3-1:6	ENSG00000226688.1	RP11-429G19.2	NA	NA	NA	inter
CUST_44174_PI429285431	12.676976	P	12.309561	P	1.29003928493186	0	lncRNA	48832-1_{1..2069}	"gi|384475523|ref|NR_047580.1| Homo sapiens transketolase (TKT), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384475523|ref|NR_047580.1| Homo sapiens transketolase (TKT), transcript variant 5, non-coding RNA"	NW_004775426.1	    74591	    76659	-	7086	NR_047580.1	NA	NA	NA	NA	NA	Unknown
CUST_19075_PI429285431	10.234735	P	9.226702	P	2.01116716342082	0	lncRNA	20766-1_{1..528}	lnc-SORCS3-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SORCS3-7:1	chr10	109160916	109161443	+	lnc-SORCS3-7	lnc-SORCS3-7:1	ENSG00000230151	RP11-432B10.1	NA	NA	NA	inter
CUST_7591_PI429285431	7.596741	P	7.555749	P	1.02882100288274	0	lncRNA	9226-1_{1..2679}	lnc-DYRK2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DYRK2-3:1	chr12	 67711527	 67714205	+	lnc-DYRK2-3	lnc-DYRK2-3:1	ENSG00000247008	ENST00000501254	CAND1	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80chr12:67701527-67708388"	NA	inter
CUST_50385_PI429285431	1.0242202	A	1.0749623	A	0.965439593994672	0	lncRNA	54093-1_{1..1559}	hg19_lincRNAsTranscripts_TCONS_l2_00030615 range=chrX:135889557-135930749 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030615 range=chrX:135889557-135930749 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	135889557	135891115	-	NA	NA	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_RAB28:range=chr4:13373450-134857745'pad=0,hg19_refFlat_RAB28:range=chr4:13373450-134857745'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RAB28:range=chr4:13370182-134857745'pad=0,hg19_refFlat_RAB28:range=chr4:13370182-134857745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RAB28:range=chr4:13371500-134857745'pad=0,hg19_refFlat_RAB28:range=chr4:13371500-134857745'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20"	NA	inter
CUST_10261_PI429285431	1.7311372	A	1.1050631	A	1.543359443369	0	lncRNA	11787-2_{3001..3493}	lnc-HPCAL1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HPCAL1-1:7	chr2	 10598549	 10599041	+	lnc-HPCAL1-1	lnc-HPCAL1-1:7	XLOC_001342	linc-ATP6V1C2-4	ODC1	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.74;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_EFCAB5:range=chr17:28270646-284007085'pad=0,hg19_refFlat_EFCAB5:range=chr17:28270646-284007085'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20chr2:10585549-10588453"	NA	inter
CUST_2665_PI429285431	0.9256596	A	0.909855	A	1.01101513871769	0	lncRNA	2651-1_{1..603}	"transcript_id ""ENST00000448909.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448909.1"" | genecode_v17"	chr6	148062570	148063172	-	ENSG00000226249.1	ENST00000448909.1	RP11-307P5.2	RP11-307P5.2-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80"	NA	inter
CUST_43751_PI429285431	9.030316	P	9.106252	P	0.948726401056872	0	lncRNA	48490-1_{1..3000}	"gi|257196139|ref|NR_028396.1| Homo sapiens TSNAX-DISC1 readthrough (TSNAX-DISC1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|257196139|ref|NR_028396.1| Homo sapiens TSNAX-DISC1 readthrough (TSNAX-DISC1), transcript variant 4, non-coding RNA"	Chr1	231664399	231667398	+	100303453	NR_028396.1	NA	NA	NA	NA	NA	inter
CUST_13924_PI429285431	1.3589864	A	1.1144534	A	1.18470921880888	0	lncRNA	15571-1_{1..488}	lnc-TM4SF4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TM4SF4-1:3	chr3	149104155	149104642	+	lnc-TM4SF4-1	lnc-TM4SF4-1:3	XLOC_002867	linc-TM4SF4-1	TM4SF1	NA	chr3:149094155-149095568	inter
CUST_89_PI429285431	1.6588031	A	1.2417334	A	1.33521280901757	0	lncRNA	82-1_{1..1989}	"transcript_id ""ENST00000397094.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000397094.1"" | genecode_v17"	chr19	 23442763	 23444751	-	ENSG00000213971.3	ENST00000397094.1	RP11-15H20.6	RP11-15H20.6-009	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_29956_PI429285431	0.919147	A	0.92013896	A	0.999312662047798	0	lncRNA	31722-1_{1..393}	n334162|M97714|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196977|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196977|1.7336300|-0.0902385	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334162|M97714|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196977|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196977|1.7336300|-0.0902385	chr14	 22337247	 22337639	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38084_PI429285431	0.9091508	A	0.90255356	A	1.00458332977745	0	lncRNA	39160-1_{1..2326}	n381074|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ben.1||0.2807660|-0.2675028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381074|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ben.1||0.2807660|-0.2675028	chr1	 21602542	 21604867	-	NA	NA	NA	NA	ECE1	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.66;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.10;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.62;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-55.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70chr1:21592542-21614868"	NA	inner
CUST_11443_PI429285431	2.8784304	A	2.9521658	A	0.950174635330935	0	lncRNA	13011-1_{1..397}	lnc-LMX1A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LMX1A-3:1	chr1	164515464	164515860	-	lnc-LMX1A-3	lnc-LMX1A-3:1	XLOC_001074	linc-RGS5-1	NA	NA	NA	inter
CUST_33096_PI429285431	2.6193047	A	1.5209658	A	2.14108029377309	0	lncRNA	34699-2_{3001..6000}	n339785|X58531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2232|NULL|14.7879000|-0.2446200	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339785|X58531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2232|NULL|14.7879000|-0.2446200	chr18	  6961554	  6964553	-	NA	NA	NA	NA	LAMA1	NA	chr18:6948554-7117813	inner
CUST_23959_PI429285431	2.013783	A	1.8454467	A	1.12376182744918	0	lncRNA	25515-1_{1..523}	lnc-SPRYD3-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPRYD3-1:6	chr12	 53440637	 53441159	-	lnc-SPRYD3-1	lnc-SPRYD3-1:6	ENSG00000257337.1	RP11-983P16.4	EIF4B	NA	chr12:53430637-53435993	inter
CUST_33778_PI429285431	1.1860793	A	2.4601963	A	0.413478150519822	0	lncRNA	35331-1_{1..2334}	n340564|BC031211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3026|NULL|-1.0668200|-0.3408564	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340564|BC031211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3026|NULL|-1.0668200|-0.3408564	chr5	 95726039	 95728372	-	NA	NA	NA	NA	PCSK1	NA	chr5:95726040-95768985	inner
CUST_46413_PI429285431	13.012521	P	13.567114	P	0.680849106114849	0	lncRNA	50627-1_{1..1472}	"gi|399498574|ref|NR_073085.1| Homo sapiens cysteine-rich protein 2 (CRIP2), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|399498574|ref|NR_073085.1| Homo sapiens cysteine-rich protein 2 (CRIP2), transcript variant 8, non-coding RNA"	NW_004166863.1	   140413	   141884	+	1397	NR_073085.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009572	0.9682139	A	0.9207011	A	1.03348166920129	0	lncRNA	TCONS_00026552	NA	NA	NA	NA	XLOC_012877	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012877), lincRNA [TCONS_00026552]"	chr18:70823061-70770945	hs|18q22.3	Agilent_HUMAN_G3V2	TCONS_00026552	TCONS_00026552	chr18	 70770945	 70823061	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25852_PI429285431	3.6147552	P	3.8606913	P	0.843268459557984	0	lncRNA	27373-1_{1..566}	lnc-BTBD10-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BTBD10-4:1	chr11	 12943998	 12944563	-	lnc-BTBD10-4	lnc-BTBD10-4:1	ENSG00000203258.3	RP11-47J17.2	TEAD1	NA	chr11:12933998-12954472	inner
CUST_37476_PI429285431	1.6259044	A	1.5734814	A	1.03700510765145	0	lncRNA	38578-1_{1..1019}	n345936|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1485|NULL|-1.2929500|-0.2722725	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345936|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1485|NULL|-1.2929500|-0.2722725	chr19	 19887451	 19888469	+	NA	NA	NA	NA	ZNF506	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70chr19:19903520-19909896"	NA	inter
CUST_38093_PI429285431	10.223946	P	8.164472	P	4.16834300752535	0	lncRNA	39169-1_{1..1691}	n381104|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001btx.1||-1.1508800|-0.3742455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381104|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001btx.1||-1.1508800|-0.3742455	chr1	 32372021	 32373711	-	NA	NA	NA	NA	PTP4A2	NA	chr1:32372022-32383712	inner
CUST_28041_PI429285431	7.5814824	P	7.542652	P	1.02728066746423	0	lncRNA	29657-1_{1..2386}	n325304|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325331|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325331|0.2165690|-0.3279086	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325304|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325331|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325331|0.2165690|-0.3279086	chr2	 55705576	 55707961	+	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-32.60;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00"	NA	inter
CUST_21228_PI429285431	8.958579	P	9.044801	P	0.941986311147192	0	lncRNA	22854-1_{1..307}	lnc-POM121C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-POM121C-1:1	chr7	 74857242	 74857548	-	lnc-POM121C-1	lnc-POM121C-1:1	ENSG00000249595.1	AC004878.7	GATSL2	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00chr7:74847242-74867341"	NA	inner
CUST_11115_PI429285431	1.0691665	A	0.8914585	A	1.13108550912705	0	lncRNA	12673-2_{3001..4652}	lnc-SULF2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SULF2-2:1	chr20	 46531127	 46532778	-	lnc-SULF2-2	lnc-SULF2-2:1	XLOC_013771	linc-SULF2-3	NA	NA	NA	inter
CUST_482_PI429285431	0.9906702	A	0.9745482	A	1.01123759148692	0	lncRNA	473-1_{1..690}	"transcript_id ""ENST00000436974.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436974.1"" | genecode_v17"	chr1	173143439	173144128	-	ENSG00000226375.1	ENST00000436974.1	RP3-395P12.2	RP3-395P12.2-001	TNFSF4	NA	chr1:173152870-173154642	inter
CUST_39765_PI429285431	1.3072782	A	0.93064076	A	1.29831228618943	0	lncRNA	40682-1_{1..1755}	n405918|NR_003191|lncRNA|Homosapiens||RefGeneNoncode|NR_003191||1.8318600|-0.2354711	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405918|NR_003191|lncRNA|Homosapiens||RefGeneNoncode|NR_003191||1.8318600|-0.2354711	chr9	124217318	124219072	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50542_PI429285431	6.7909336	P	7.039937	P	0.841477499172673	0	lncRNA	54234-1_{1..1002}	hg19_lincRNAsTranscripts_TCONS_l2_00030877 range=chrX:152662829-152664307 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030877 range=chrX:152662829-152664307 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	152662829	152663830	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5720_PI429285431	1.482023	A	0.8901396	A	1.5072130902249	0	lncRNA	5644-1_{1..402}	"transcript_id ""ENST00000585297.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585297.1"" | genecode_v17"	chr17	  8869213	  8869614	+	ENSG00000266389.1	ENST00000585297.1	CTB-41I6.1	CTB-41I6.1-001	PIK3R5	NA	chr17:8859213-8869024	inter
CUST_23419_PI429285431	1.6113007	A	2.234816	A	0.649087419727692	0	lncRNA	24987-1_{1..568}	lnc-RP11-553A10.1.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-553A10.1.1-1:3	chr3	110789917	110790484	-	lnc-RP11-553A10.1.1-1	lnc-RP11-553A10.1.1-1:3	ENSG00000242242.1	PVRL3-AS1	PVRL3	NA	chr3:110790865-110800210	inter
CUST_10311_PI429285431	1.2553368	A	0.90320826	A	1.27644249113625	0	lncRNA	11839-1_{1..703}	lnc-CHAF1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHAF1B-1:1	chr21	 37757028	 37757730	+	lnc-CHAF1B-1	lnc-CHAF1B-1:1	XLOC_013932	linc-CHAF1B	MORC3	NA	chr21:37747028-37748944	inter
CUST_32184_PI429285431	0.92135954	A	0.90755904	A	1.00961167595068	0	lncRNA	33882-1_{1..1292}	n338755|BC037867|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1176|NULL|-1.2202200|-0.4258839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338755|BC037867|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1176|NULL|-1.2202200|-0.4258839	chr13	 62577290	 62578581	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43007_PI429285431	0.943263	A	0.9177382	A	1.01784988154612	0	lncRNA	46178-1_{1..76}	ENST00000517267 ncrna:snoRNA chromosome:GRCh37:3:112856813:112856888:-1 gene:ENSG00000253076 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517267 ncrna:snoRNA chromosome:GRCh37:3:112856813:112856888:-1 gene:ENSG00000253076 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	112856813	112856888	-	ENSG00000253076	ENST00000517267	NA	NA	NA	NA	NA	inter
CUST_10330_PI429285431	6.621497	P	6.4413004	P	1.13303827700153	0	lncRNA	11858-1_{1..2269}	lnc-AC092811.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092811.1-1:1	chr1	225659565	225661833	+	lnc-AC092811.1-1	lnc-AC092811.1-1:1	XLOC_000585	linc-SRP9-3	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-34.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40"	NA	inter
CUST_20055_PI429285431	0.9106106	A	0.9086425	A	1.00136511388691	0	lncRNA	21706-1_{1..558}	lnc-PABPC4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PABPC4-3:1	chr1	 39723207	 39723764	-	lnc-PABPC4-3	lnc-PABPC4-3:1	ENSG00000226438.1	RP11-420K8.1	MACF1	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MACF1:range=chr1:39549891-399514665'pad=0,hg19_refFlat_MACF1:range=chr1:39549891-399514665'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10chr1:39713207-39733321"	NA	inner
CUST_6780_PI429285431	2.2882512	A	3.2467182	P	0.514603437758056	0	lncRNA	6727-1_{1..475}	"transcript_id ""ENST00000602323.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602323.1"" | genecode_v17"	chr21	 17961009	 17961483	+	ENSG00000215386.6	ENST00000602323.1	LINC00478	LINC00478-019	NA	NA	NA	inter
CUST_44395_PI429285431	2.4140255	A	1.6577482	A	1.68912641015034	0	lncRNA	49012-1_{1..3000}	"gi|332801092|ref|NR_003249.2| Homo sapiens heterogeneous nuclear ribonucleoprotein D-like (HNRPDL), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|332801092|ref|NR_003249.2| Homo sapiens heterogeneous nuclear ribonucleoprotein D-like (HNRPDL), transcript variant 3, non-coding RNA"	Chr4	 83343717	 83346716	-	9987	NR_003249.2	NA	NA	NA	NA	NA	inter
CUST_50430_PI429285431	0.9265492	A	0.93083876	A	0.997031119448312	0	lncRNA	54134-1_{1..1682}	hg19_lincRNAsTranscripts_TCONS_l2_00030467 range=chrX:38342053-38344145 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030467 range=chrX:38342053-38344145 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 38342053	 38343734	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3364_PI429285431	3.2257528	P	3.1476207	P	1.05565037356744	0	lncRNA	3339-1_{1..157}	"transcript_id ""ENST00000427161.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427161.1"" | genecode_v17"	chr9	 10631750	 10631906	-	ENSG00000232035.1	ENST00000427161.1	RP11-87N24.3	RP11-87N24.3-001	NA	NA	NA	inter
CUST_20531_PI429285431	5.9038515	P	6.166891	P	0.833330390832743	0	lncRNA	22173-1_{1..562}	lnc-FAM110B-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM110B-8:1	chr8	 58113576	 58114137	+	lnc-FAM110B-8	lnc-FAM110B-8:1	ENSG00000253301.1	RP11-513O17.2	NA	NA	NA	inter
CUST_36249_PI429285431	0.91690886	A	0.90457386	A	1.00858662586277	0	lncRNA	37492-3_{6001..7448}	n344785|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_334|NULL|-1.4153100|-0.2582917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344785|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_334|NULL|-1.4153100|-0.2582917	chr6	  6686541	  6687988	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48458_PI429285431	4.1213336	P	4.421274	P	0.812285952472681	0	lncRNA	52311-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00001793 range=chr1:222645271-222652914 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001793 range=chr1:222645271-222652914 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	222645271	222648270	-	NA	NA	NA	NA	HHIPL2	NA	chr1:222641463-222662914	inter
CUST_51411_PI429285431	0.9139035	A	1.4215686	A	0.703359855440722	0	lncRNA	54989-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00009917 range=chr16:75602-87928 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009917 range=chr16:75602-87928 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	    78602	    81601	-	NA	NA	NA	NA	POLR3K	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-62.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70chr16:96979-97928"	NA	inter
CUST_17931_PI429285431	2.4316409	A	3.7342877	P	0.405381793197079	0	lncRNA	19663-1_{1..355}	lnc-CLVS1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLVS1-1:5	chr8	 61939695	 61940049	+	lnc-CLVS1-1	lnc-CLVS1-1:5	XLOC_006815	linc-CLVS1	NA	NA	NA	inter
CUST_51543_PI429285431	6.7675567	P	6.756522	P	1.00767799699897	0	lncRNA	55110-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00010547 range=chr17:7040595-7049718 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010547 range=chr17:7040595-7049718 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	  7043595	  7046594	+	NA	NA	NA	NA	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40"	NA	inter
CUST_37675_PI429285431	3.7696233	P	4.3112497	P	0.686995998018846	0	lncRNA	38769-1_{1..212}	n346162|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1712|NULL|-1.2910400|-0.0810919	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346162|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1712|NULL|-1.2910400|-0.0810919	chr10	 77191404	 77191615	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29019_PI429285431	0.9019529	A	0.8962813	A	1.00393899106255	0	lncRNA	30745-1_{1..374}	n326505|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097435|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097435|-1.3686600|-0.3692092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326505|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097435|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097435|-1.3686600|-0.3692092	chr1	100865192	100865565	-	NA	NA	NA	NA	CDC14A	NA	chr1:100855192-100877088	inner
CUST_44845_PI429285431	7.226687	P	7.2401643	P	0.990701746116819	0	lncRNA	49373-1_{1..903}	"gi|312836816|ref|NR_037593.1| Homo sapiens colon adenocarcinoma hypermethylated (non-protein coding) (CAHM), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|312836816|ref|NR_037593.1| Homo sapiens colon adenocarcinoma hypermethylated (non-protein coding) (CAHM), non-coding RNA"	Chr6	163834097	163834999	-	100526820	NR_037593.1	NA	NA	NA	NA	NA	inter
CUST_42759_PI429285431	0.9259587	A	0.9078662	A	1.01261973051144	0	lncRNA	45724-1_{1..70}	ENST00000411005 ncrna:snoRNA chromosome:GRCh37:5:137894659:137894728:-1 gene:ENSG00000222937 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000411005 ncrna:snoRNA chromosome:GRCh37:5:137894659:137894728:-1 gene:ENSG00000222937 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	137894659	137894728	-	ENSG00000222937	ENST00000411005	NA	NA	HSPA9	NA	chr5:137890571-137904728	inner
CUST_47805_PI429285431	2.5924678	A	1.7990303	A	1.7331992290588	0	lncRNA	51724-1_{1..703}	"gi|310124288|ref|XR_110944.1| PREDICTED: Homo sapiens uncharacterized LOC100507395 (LOC100507395), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124288|ref|XR_110944.1| PREDICTED: Homo sapiens uncharacterized LOC100507395 (LOC100507395), misc_RNA"	NT_167214.1	     4562	     5264	-	100507395	XR_110944.2	NA	NA	NA	NA	NA	Unknown
CUST_30557_PI429285431	7.4375844	P	7.6540375	P	0.860678836799019	0	lncRNA	32338-1_{1..449}	n335738|X03757|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321000|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321000|3.2771500|-0.2024743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335738|X03757|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321000|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321000|3.2771500|-0.2024743	NA	NA	      448	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6798_PI429285431	8.902246	P	9.317002	P	0.750146354601517	0	lncRNA	6746-1_{1..829}	"transcript_id ""ENST00000419299.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419299.1"" | genecode_v17"	chr21	 22116057	 22116885	-	ENSG00000224924.2	ENST00000419299.1	LINC00320	LINC00320-005	NA	NA	NA	inter
CUST_39976_PI429285431	4.6154184	P	3.2825563	P	2.51901916794934	0	lncRNA	40847-2_{3001..4012}	n407055|NR_024549|lncRNA|Homosapiens||RefGeneNoncode|NR_024549||12.5172000|-0.3104194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407055|NR_024549|lncRNA|Homosapiens||RefGeneNoncode|NR_024549||12.5172000|-0.3104194	chr7	 86784676	 86785687	+	NA	NA	NA	NA	DMTF1	NA	chr7:86781677-86825648	inner
CUST_46427_PI429285431	1.0050007	A	0.8877136	A	1.08469324409402	0	lncRNA	50639-1_{1..1162}	"gi|223633993|ref|NR_026859.1| Homo sapiens unc-51-like kinase 4 (C. elegans) pseudogene 3 (ULK4P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223633993|ref|NR_026859.1| Homo sapiens unc-51-like kinase 4 (C. elegans) pseudogene 3 (ULK4P3), non-coding RNA"	Chr15	 30395935	 30397096	+	89837	NR_026859.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40"	NA	inter
CUST_32329_PI429285431	5.8567133	P	6.4512014	P	0.662279404843198	0	lncRNA	34011-1_{1..2094}	n338908|BC049212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1334|NULL|11.7422000|-0.1105600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338908|BC049212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1334|NULL|11.7422000|-0.1105600	chr19	 51835071	 51837164	-	NA	NA	NA	NA	VSIG10L	NA	chr19:51834795-51845378	inner
CUST_11381_PI429285431	11.596024	P	11.81483	P	0.859276294537205	0	lncRNA	12946-1_{1..1076}	lnc-TPTE-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPTE-3:2	chr21	  9827391	  9828466	-	lnc-TPTE-3	lnc-TPTE-3:2	XLOC_013994	linc-S100B-2	NA	NA	NA	inter
CUST_28608_PI429285431	1.7187853	A	1.2523588	A	1.38168285090607	0	lncRNA	30292-1_{1..491}	n325973|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047900|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047900|-1.3400800|-0.3792211	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325973|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047900|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047900|-1.3400800|-0.3792211	chr10	 48608126	 48608616	-	NA	NA	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.51;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-26.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-60.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80"	NA	inter
CUST_46648_PI429285431	6.382457	P	6.4850326	P	0.931368761833201	0	lncRNA	50821-1_{1..1783}	"gi|310124370|ref|XR_109304.1| PREDICTED: Homo sapiens uncharacterized LOC100505722 (LOC100505722), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310124370|ref|XR_109304.1| PREDICTED: Homo sapiens uncharacterized LOC100505722 (LOC100505722), misc_RNA"	NA	NA	NA	NA	NA	XR_109304.1	NA	NA	NA	NA	NA	Unknown
CUST_21984_PI429285431	0.91919047	A	0.96997637	A	0.965410283841713	0	lncRNA	23592-1_{1..572}	lnc-MNAT1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MNAT1-3:1	chr14	 61108836	 61109407	+	lnc-MNAT1-3	lnc-MNAT1-3:1	ENSG00000258952.1	RP11-1042B17.5	SIX1	NA	chr14:61098836-61116155	inter
CUST_43208_PI429285431	0.9158995	A	3.3968897	A	0.179121423036097	0	lncRNA	48022-1_{1..428}	ENST00000428716 havana:sense_intronic chromosome:GRCh37:13:77654646:77655325:-1 gene:ENSG00000229521 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000428716 havana:sense_intronic chromosome:GRCh37:13:77654646:77655325:-1 gene:ENSG00000229521 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr13	 77654646	 77655073	-	ENSG00000229521	ENST00000428716	NA	NA	MYCBP2	NA	chr13:77644646-77665325	inner
CUST_20075_PI429285431	4.3366256	P	4.1613564	P	1.12917508382399	0	lncRNA	21723-2_{3001..3361}	lnc-P2RY2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-P2RY2-1:1	chr11	 72953020	 72953380	+	lnc-P2RY2-1	lnc-P2RY2-1:1	ENSG00000260401.1	RP11-800A3.4	P2RY6	NA	chr11:72960361-72963380	inter
CUST_31577_PI429285431	0.92210436	A	0.9118074	A	1.00716284008617	0	lncRNA	33334-1_{1..737}	n338079|AL109720|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|466|NULL|-0.8766920|-0.3332882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338079|AL109720|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|466|NULL|-0.8766920|-0.3332882	chr15	 83407137	 83407873	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10625_PI429285431	0.90299135	A	0.91834354	A	0.989415091408172	0	lncRNA	12156-2_{3001..4303}	lnc-ZADH2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZADH2-1:1	chr18	 72884639	 72885941	-	lnc-ZADH2-1	lnc-ZADH2-1:1	XLOC_012885	linc-FAM69C-1	NA	NA	NA	inter
CUST_48838_PI429285431	1.6481063	A	2.2159364	A	0.674630710853824	0	lncRNA	52676-1_{1..829}	hg19_lincRNAsTranscripts_TCONS_l2_00019347 range=chr3:72082432-72109336 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019347 range=chr3:72082432-72109336 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 72082432	 72083260	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39119_PI429285431	2.8801126	A	3.1054769	A	0.855379003648178	0	lncRNA	40095-1_{1..2285}	n385698|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bvg.2||-0.3152820|-0.2068611	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385698|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bvg.2||-0.3152820|-0.2068611	chr9	131247779	131250063	+	NA	NA	NA	NA	ODF2	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.21;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70chr9:131237779-131260064"	NA	inner
CUST_37545_PI429285431	6.015454	P	5.8972883	P	1.08535402250369	0	lncRNA	38651-1_{1..3000}	n346023|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1573|NULL|-1.3231500|-0.1156631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n346023|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1573|NULL|-1.3231500|-0.1156631	chr21	 44864599	 44867598	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_37469_PI429285431	6.7065997	P	6.738893	P	0.977864653287383	0	lncRNA	38569-1_{1..686}	n345925|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1474|NULL|-1.2858900|-0.2317827	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345925|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1474|NULL|-1.2858900|-0.2317827	chr14	 19650059	 19650744	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23336_PI429285431	0.9183157	A	1.5202265	A	0.658880712364397	0	lncRNA	24905-3_{6001..6890}	lnc-RP11-210M15.2.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-210M15.2.1-4:1	chr15	 80550349	 80551238	-	lnc-RP11-210M15.2.1-4	lnc-RP11-210M15.2.1-4:1	ENSG00000259417.2	RP11-2E17.1	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60"	NA	inter
CUST_18120_PI429285431	6.735075	P	6.6575527	P	1.05520426434042	0	lncRNA	19855-1_{1..287}	lnc-ASPH-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASPH-6:1	chr8	 61823051	 61823337	-	lnc-ASPH-6	lnc-ASPH-6:1	XLOC_007096	linc-CA8-4	NA	NA	NA	inter
CUST_18221_PI429285431	4.788359	P	5.1302557	P	0.789003333128477	0	lncRNA	19956-1_{1..498}	lnc-GRHL2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GRHL2-7:1	chr8	102145260	102145757	+	lnc-GRHL2-7	lnc-GRHL2-7:1	ENSG00000253355	KB-1460A1.2	NA	NA	NA	inter
CUST_4305_PI429285431	3.565114	P	3.422329	P	1.10403430437572	0	lncRNA	4260-1_{1..741}	"transcript_id ""ENST00000543387.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000543387.1"" | genecode_v17"	chr12	 67834778	 67835518	-	ENSG00000256172.1	ENST00000543387.1	RP11-473M14.3	RP11-473M14.3-001	NA	NA	NA	inter
CUST_32971_PI429285431	0.94004333	A	0.92249787	A	1.01223583892451	0	lncRNA	34588-1_{1..2239}	n339647|AK094605|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2091|NULL|-1.1892000|-0.4888095	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339647|AK094605|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2091|NULL|-1.1892000|-0.4888095	chr3	154052597	154054835	-	NA	NA	NA	NA	GPR149	NA	chr3:154055461-154064836	inter
CUST_37359_PI429285431	4.8351026	P	4.827496	P	1.00528641739741	0	lncRNA	38463-1_{1..1578}	n345807|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1356|NULL|-1.5440200|-0.1523732	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345807|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1356|NULL|-1.5440200|-0.1523732	chr19	 59086807	 59088384	+	NA	NA	NA	NA	MZF1	NA	chr19:59076807-59084942	inter
LNCA_21_P0007525	2.5992174	A	2.9171574	A	0.80221452882306	0	lncRNA	TCONS_00020339	NA	NA	NA	NA	XLOC_009670	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009670), lincRNA [TCONS_00020339]"	chr12:13329390-13329449	hs|12p13.1	Agilent_HUMAN_G3V2	TCONS_00020339	TCONS_00020339	chr12	 13329390	 13329449	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014563	5.4642	P	5.6145744	P	0.90101660556987	0	lncRNA	XR_110312	XR_110312	XR_110312	NA	NA	LOC100505675	uncharacterized LOC100505675	NA	THC2571460	NA	"PREDICTED: Homo sapiens hypothetical LOC100505675 (LOC100505675), miscRNA [XR_110312]"	chr5:141544076-141544017	hs|5q31.3	Agilent_HUMAN_G3V2	XR_110312	XR_110312	chr5	141544017	141544076	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004048	0.9503791	A	1.530809	A	0.668764466606112	0	lncRNA	ENST00000511418	NA	NA	NA	NA	XLOC_004521	NA	ENST00000511418	NA	NA	"BROAD Institute lincRNA (XLOC_004521), lincRNA [TCONS_00009489]"	chr5:116374206-116374265	hs|5q23.1	Agilent_HUMAN_G3V2	ENST00000511418	ENST00000511418	chr5	116374206	116374265	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3463_PI429285431	0.9303752	A	0.925098	A	1.00366457449533	0	lncRNA	3434-1_{1..197}	"transcript_id ""ENST00000438582.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438582.1"" | genecode_v17"	chr9	 89029197	 89029393	+	ENSG00000235819.1	ENST00000438582.1	RP11-359J6.1	RP11-359J6.1-001	NA	NA	NA	inter
CUST_42111_PI429285431	4.984785	P	4.9314957	P	1.03762798862988	0	lncRNA	44075-1_{1..122}	ENST00000384903 ncrna:miRNA chromosome:GRCh37:20:33578179:33578300:1 gene:ENSG00000207635 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384903 ncrna:miRNA chromosome:GRCh37:20:33578179:33578300:1 gene:ENSG00000207635 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 33578179	 33578300	+	ENSG00000207635	ENST00000384903	NA	NA	MYH7B	NA	chr20:33568179-33588300	inner
LNCA_21_P0006583	0.96952724	A	0.9282548	A	1.02902101092192	0	lncRNA	TCONS_00017540	NA	NA	NA	NA	XLOC_008223	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008223), lincRNA [TCONS_00017540]"	chrX:119269913-119269854	hs|Xq24	Agilent_HUMAN_G3V2	TCONS_00017540	TCONS_00017540	chrX	119269854	119269913	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14464_PI429285431	1.0090909	A	1.2294717	A	0.858338847613005	0	lncRNA	16127-1_{1..240}	lnc-AC069368.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC069368.3.1-1:1	chr15	 65100599	 65100838	+	lnc-AC069368.3.1-1	lnc-AC069368.3.1-1:1	XLOC_011288	linc-PLEKHO2-1	PIF1	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10chr15:65107831-65110715"	NA	inter
CUST_33992_PI429285431	0.9309871	A	1.5441737	A	0.653751111804717	0	lncRNA	35529-1_{1..2128}	n340805|BC033554|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3268|NULL|-0.9364720|-0.2708412	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340805|BC033554|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3268|NULL|-0.9364720|-0.2708412	chr17	 64394188	 64396315	-	NA	NA	NA	NA	PRKCA	NA	chr17:64384188-64422972	inner
CUST_51896_PI429285431	3.3619814	P	2.9049478	A	1.37271640109793	0	lncRNA	55442-2_{3001..5163}	hg19_lincRNAsTranscripts_TCONS_l2_00012718 range=chr19:56117059-56123017 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012718 range=chr19:56117059-56123017 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 56120059	 56122221	+	NA	NA	NA	NA	ZNF784	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90chr19:56132107-56133017"	NA	inter
CUST_19012_PI429285431	1.0605712	A	1.1396551	A	0.946658576660488	0	lncRNA	20702-1_{1..388}	lnc-RNF38-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF38-1:1	chr9	 36334856	 36335243	-	lnc-RNF38-1	lnc-RNF38-1:1	ENSG00000224304	RP11-84P7.3	RNF38	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00chr9:36336397-36344969"	NA	inter
CUST_43108_PI429285431	0.92209196	A	0.91553503	A	1.004555261345	0	lncRNA	47811-1_{1..174}	ENST00000515943 ncrna:snRNA chromosome:GRCh37:9:85890856:85891029:1 gene:ENSG00000251752 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515943 ncrna:snRNA chromosome:GRCh37:9:85890856:85891029:1 gene:ENSG00000251752 gene_biotype:snRNA transcript_biotype:snRNA	chr9	 85890856	 85891029	+	ENSG00000251752	ENST00000515943	NA	NA	FRMD3	NA	chr9:85880856-85901029	inner
CUST_1392_PI429285431	0.9214517	A	0.91093713	A	1.00731476771432	0	lncRNA	1381-1_{1..553}	"transcript_id ""ENST00000474149.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000474149.1"" | genecode_v17"	chr3	 81257344	 81257896	-	ENSG00000242145.1	ENST00000474149.1	RP11-520D19.1	RP11-520D19.1-001	NA	NA	NA	inter
CUST_50403_PI429285431	6.509563	P	6.585754	P	0.948558726083143	0	lncRNA	54107-1_{1..969}	hg19_lincRNAsTranscripts_TCONS_l2_00030122 range=chrX:2527402-2556367 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030122 range=chrX:2527402-2556367 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	  2527402	  2528370	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38117_PI429285431	0.9229308	A	0.9138811	A	1.00629248908811	0	lncRNA	39191-1_{1..2387}	n381218|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ejp.3||0.4609690|-0.2127589	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n381218|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ejp.3||0.4609690|-0.2127589	chr1	143647638	143650024	-	NA	NA	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90"	NA	inter
LNCA_21_P0006686	1.0063607	A	0.95767075	A	1.03432527049436	0	lncRNA	ENST00000479920	NA	BC047063	NA	NA	XLOC_008528	NA	ENST00000479920	NA	NA	"BROAD Institute lincRNA (XLOC_008528), lincRNA [TCONS_00017843]"	chr10:81427703-81430872	hs|10q22.3	Agilent_HUMAN_G3V2	ENST00000479920	ENST00000479920	chr10	 81427703	 81430872	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49558_PI429285431	1.9455404	A	1.6154087	A	1.2571281293475	0	lncRNA	53348-1_{1..384}	hg19_lincRNAsTranscripts_TCONS_l2_00024863 range=chr6:107195032-107212989 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024863 range=chr6:107195032-107212989 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	107195032	107195415	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11872_PI429285431	1.9939854	A	1.2385159	A	1.68818089197426	0	lncRNA	13452-1_{1..1950}	lnc-TSC22D1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSC22D1-1:1	chr13	 44979750	 44981699	-	lnc-TSC22D1-1	lnc-TSC22D1-1:1	XLOC_010588	linc-CCDC122-4	SERP2	NA	chr13:44969750-44971850	inter
CUST_20839_PI429285431	1.0633894	A	1.3105834	A	0.842533525936148	0	lncRNA	22470-1_{1..625}	lnc-MUC20-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MUC20-4:1	chr3	195640366	195640990	+	lnc-MUC20-4	lnc-MUC20-4:1	ENSG00000226155.1	AC124944.3	TNK2	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.60chr3:195630366-195635880"	NA	inter
LNCA_21_P0004004	1.0139378	A	0.96798116	A	1.03236750735426	0	lncRNA	ENST00000513392	NA	NA	NA	NA	XLOC_004397	NA	ENST00000513392	NA	NA	"BROAD Institute lincRNA (XLOC_004397), lincRNA [TCONS_00009405]"	chr5:56910005-56910064	hs|5q11.2	Agilent_HUMAN_G3V2	ENST00000513392	ENST00000513392	chr5	 56910005	 56910064	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50040_PI429285431	7.925006	P	5.466217	P	5.49755068440756	0	lncRNA	53776-1_{1..263}	hg19_lincRNAsTranscripts_TCONS_l2_00028187 range=chr8:47502987-47505093 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028187 range=chr8:47502987-47505093 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 47502987	 47503249	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13491_PI429285431	1.2829311	A	0.9277194	A	1.27917327244327	0	lncRNA	15131-1_{1..2721}	lnc-RNASEH1-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-RNASEH1-6:2	chr2	  4703756	  4706476	-	lnc-RNASEH1-6	lnc-RNASEH1-6:2	XLOC_001956	linc-RNASEH1-5	NA	NA	NA	inter
CUST_41867_PI429285431	1.2338665	A	1.6083516	A	0.771380670486556	0	lncRNA	43527-1_{1..85}	ENST00000384862 ncrna:miRNA chromosome:GRCh37:19:54194135:54194219:1 gene:ENSG00000207594 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384862 ncrna:miRNA chromosome:GRCh37:19:54194135:54194219:1 gene:ENSG00000207594 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54194135	 54194219	+	ENSG00000207594	ENST00000384862	NA	NA	NA	NA	NA	inter
CUST_24832_PI429285431	5.363287	P	5.42701	P	0.956791846184137	0	lncRNA	26372-1_{1..718}	lnc-SMPX-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMPX-2:1	chrX	 23082155	 23082872	-	lnc-SMPX-2	lnc-SMPX-2:1	ENSG00000233067.1	RP11-40F8.2	NA	NA	NA	inter
CUST_1403_PI429285431	1.0171194	A	0.91469	A	1.07357977633762	0	lncRNA	1392-1_{1..458}	"transcript_id ""ENST00000471993.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000471993.1"" | genecode_v17"	chr3	 99219191	 99219648	+	ENSG00000243296.1	ENST00000471993.1	RP11-779P15.1	RP11-779P15.1-001	NA	NA	NA	inter
CUST_20817_PI429285431	2.7300959	A	3.2312918	A	0.706520878700664	0	lncRNA	22448-1_{1..472}	lnc-RP11-770G2.3.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-770G2.3.1-1:2	chr11	 65557408	 65557879	-	lnc-RP11-770G2.3.1-1	lnc-RP11-770G2.3.1-1:2	ENSG00000255120.1	RP11-770G2.4	OVOL1	NA	chr11:65554529-65564685	inner
LNCA_21_P0014652	1.0331395	A	1.9424119	A	0.532453557895909	0	lncRNA	XR_110909	XR_110909	XR_110909	NA	Hs.523698	LOC100507411	uncharacterized LOC100507411	ENST00000531311	THC2667564	NA	"PREDICTED: Homo sapiens hypothetical LOC100507411, transcript variant 2 (LOC100507411), miscRNA [XR_110909]"	chr11:59407147-59407206	hs|11q12.1	Agilent_HUMAN_G3V2	XR_110909	XR_110909	chr11	 59407147	 59407206	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47750_PI429285431	0.916793	A	0.90982753	A	1.00483976992697	0	lncRNA	51694-1_{1..3000}	"gi|385137096|ref|NR_047633.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 63, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137096|ref|NR_047633.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 63, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047633.1	NA	NA	NA	NA	NA	inter
CUST_10639_PI429285431	3.642915	P	3.8019214	P	0.895641696888328	0	lncRNA	12172-1_{1..2577}	lnc-TAOK3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TAOK3-1:3	chr12	118573662	118576238	-	lnc-TAOK3-1	lnc-TAOK3-1:3	XLOC_010212	linc-VSIG10	PEBP1	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50chr12:118573870-118583390"	NA	inter
CUST_38608_PI429285431	0.92152387	A	0.9129654	A	1.00594991016595	0	lncRNA	39614-1_{1..1067}	n383730|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002too.1||-1.0543000|-0.4869251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383730|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002too.1||-1.0543000|-0.4869251	chr2	128258672	128259738	-	NA	NA	NA	NA	IWS1	NA	chr2:128248672-128269739	inner
CUST_331_PI429201921	2.4298801	A	2.1241708	A	1.23602617916568	0	lncRNA	220-1_{1..3000}	TC0Y000305.hg.1	TCONS_l2_00031035-XLOC_l2_015932 // Broad TUCP // linc-AMELY-10 chrY:-:9355207-9363096 // chrY // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00031036-XLOC_l2_015932 // Broad TUCP // linc-AMELY-10 chrY:-:9357274-9362877 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:9355207-9363096	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031035-XLOC_l2_015932	linc-AMELY-10	chrY	  9355207	  9363096	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36618_PI429285431	0.93323576	A	1.1185656	A	0.879447986795422	0	lncRNA	37811-1_{1..1123}	n345114|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_663|NULL|-1.3565500|-0.2769635	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345114|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_663|NULL|-1.3565500|-0.2769635	chr10	 47032333	 47033455	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45907_PI429285431	1.4843197	A	1.3883796	A	1.06876161582466	0	lncRNA	50217-2_{3001..3802}	"gi|222080056|ref|NR_026691.1| Homo sapiens interleukin 10 receptor, alpha (IL10RA), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|222080056|ref|NR_026691.1| Homo sapiens interleukin 10 receptor, alpha (IL10RA), transcript variant 2, non-coding RNA"	Chr11	117860106	117860907	+	3587	NR_026691.1	NA	NA	NA	NA	NA	inter
CUST_25718_PI429285431	2.7017217	A	2.8589032	A	0.896775332656237	0	lncRNA	27246-1_{1..420}	lnc-NBPF24-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NBPF24-3:1	chr1	147752772	147753191	-	lnc-NBPF24-3	lnc-NBPF24-3:1	ENSG00000234283.1	RP11-495P10.6	NA	NA	NA	inter
CUST_14316_PI429285431	0.9017944	A	0.899723	A	1.00143681630268	0	lncRNA	15974-1_{1..351}	lnc-ATAD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATAD1-1:1	chr10	 89600944	 89601294	-	lnc-ATAD1-1	lnc-ATAD1-1:1	XLOC_008894	linc-ATAD1	NA	NA	NA	inter
CUST_9900_PI429285431	4.918306	P	5.3645	P	0.733976613139672	0	lncRNA	11424-1_{1..398}	lnc-OLFM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OLFM1-1:1	chr9	138027135	138027532	+	lnc-OLFM1-1	lnc-OLFM1-1:1	XLOC_007604	linc-KIAA0649-5	NA	NA	NA	inter
CUST_36522_PI429285431	2.402134	A	2.8174582	A	0.749850970461097	0	lncRNA	37721-1_{1..411}	n345022|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_571|NULL|-1.2989400|-0.2860275	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345022|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_571|NULL|-1.2989400|-0.2860275	chr8	123168002	123168412	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51305_PI429285431	0.9038244	A	1.0435439	A	0.907695619409805	0	lncRNA	54909-1_{1..291}	hg19_lincRNAsTranscripts_TCONS_l2_00009006 range=chr15:33596103-33602504 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009006 range=chr15:33596103-33602504 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 33596103	 33596393	-	NA	NA	NA	NA	RYR3	NA	chr15:33603177-33612504	inter
CUST_22213_PI429285431	5.8822308	P	6.2723627	P	0.76305983769604	0	lncRNA	23813-1_{1..290}	lnc-SMUG1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMUG1-4:2	chr12	 54393361	 54393650	-	lnc-SMUG1-4	lnc-SMUG1-4:2	ENSG00000250451.1	HOXC-AS1	HOXC9	NA	chr12:54393877-54397121	inter
CUST_32693_PI429285431	2.2501557	A	2.2805166	A	0.979175319565062	0	lncRNA	34339-1_{1..2451}	n339322|AK022229|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1754|NULL|-1.0184600|-0.1776830	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339322|AK022229|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1754|NULL|-1.0184600|-0.1776830	chr16	 86628794	 86631244	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37252_PI429285431	1.9708302	A	1.3589864	A	1.52821105302423	0	lncRNA	38359-1_{1..888}	n345683|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1232|NULL|-1.3571500|-0.3145812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345683|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1232|NULL|-1.3571500|-0.3145812	chrX	102659761	102660648	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47191_PI429285431	1.392073	A	0.91777223	A	1.38924473236995	0	lncRNA	51266-1_{1..3000}	"gi|291621683|ref|NR_024057.2| Homo sapiens zinc finger protein 542 (ZNF542), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|291621683|ref|NR_024057.2| Homo sapiens zinc finger protein 542 (ZNF542), transcript variant 3, non-coding RNA"	Chr19	 56879490	 56882489	+	147947	NR_024057.2	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60"	NA	inter
LNCA_21_P0005775	4.350178	P	4.748851	P	0.758555686774073	0	lncRNA	ENST00000523604	NA	NA	NA	NA	XLOC_006946	NA	ENST00000523604	NA	NA	"BROAD Institute lincRNA (XLOC_006946), lincRNA [TCONS_00014879]"	chr8:142336327-142336386	hs|8q24.3	Agilent_HUMAN_G3V2	ENST00000523604	ENST00000523604	chr8	142336327	142336386	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9102_PI429285431	8.427896	P	8.051538	P	1.29806083647811	0	lncRNA	10624-1_{1..2138}	lnc-KIAA1755-5:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1755-5:10	chr20	 37056323	 37058460	-	lnc-KIAA1755-5	lnc-KIAA1755-5:10	ENSG00000196756	RP4-564F22.2	NA	"hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20"	NA	inter
LNCA_21_P0009555	1.6343161	A	1.2145563	A	1.3377048164818	0	lncRNA	TCONS_00026518	NA	NA	NA	NA	XLOC_012839	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012839), lincRNA [TCONS_00026518]"	chr18:45347378-45347319	hs|18q21.1	Agilent_HUMAN_G3V2	TCONS_00026518	TCONS_00026518	chr18	 45347319	 45347378	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5976_PI429285431	1.9136035	A	1.4272318	A	1.40091721063743	0	lncRNA	5904-1_{1..547}	"transcript_id ""ENST00000589708.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589708.1"" | genecode_v17"	chr17	 74852248	 74852794	+	ENSG00000267535.1	ENST00000589708.1	LINC00868	LINC00868-003	MGAT5B	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50chr17:74864798-74867916"	NA	inter
CUST_43889_PI429285431	6.9846716	P	7.0981445	P	0.924360233053649	0	lncRNA	48608-1_{1..3000}	"gi|385275068|ref|NR_047656.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385275068|ref|NR_047656.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 5, non-coding RNA"	Chr2	 97258892	 97261891	-	55683	NR_047656.1	NA	NA	NA	NA	NA	inter
CUST_43553_PI429285431	5.5758505	P	6.2642	P	0.620563393004648	0	lncRNA	48328-2_{3001..4132}	"gi|301500673|ref|NR_036437.1| Homo sapiens potassium voltage-gated channel, Shaw-related subfamily, member 4 (KCNC4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301500673|ref|NR_036437.1| Homo sapiens potassium voltage-gated channel, Shaw-related subfamily, member 4 (KCNC4), transcript variant 4, non-coding RNA"	Chr1	110756336	110757467	+	3749	NR_036437.1	NA	NA	NA	NA	NA	inter
CUST_20528_PI429285431	0.90356004	A	0.90105164	A	1.00174020278625	0	lncRNA	22170-1_{1..2014}	lnc-LSS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LSS-1:1	chr21	 47672344	 47674357	-	lnc-LSS-1	lnc-LSS-1:1	ENSG00000239415.1	AP001469.9	MCM3AP	"hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-29.80chr21:47662344-47684047"	NA	inner
CUST_3728_PI429285431	0.9195432	A	1.0813851	A	0.893883114573399	0	lncRNA	3697-1_{1..407}	"transcript_id ""ENST00000558852.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558852.1"" | genecode_v17"	chr10	 72698890	 72699296	+	ENSG00000259267.1	ENST00000558852.1	RP11-432J9.6	RP11-432J9.6-002	NA	NA	NA	inter
CUST_50437_PI429285431	6.8286076	P	6.5436773	P	1.21835140082366	0	lncRNA	54141-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030193 range=chrX:47657379-47670374 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030193 range=chrX:47657379-47670374 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 47657379	 47660378	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47880_PI429285431	0.93070966	A	1.1660233	A	0.849500298817499	0	lncRNA	51775-2_{3001..3349}	"gi|410171550|ref|XR_171243.1| PREDICTED: Homo sapiens chromosome 1 open reading frame 81 (C1orf81), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410171550|ref|XR_171243.1| PREDICTED: Homo sapiens chromosome 1 open reading frame 81 (C1orf81), misc_RNA"	NA	NA	NA	NA	NA	XR_171243.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012409	3.3215659	P	2.7277725	A	1.50920982784745	0	lncRNA	TCONS_l2_00018962	NA	NA	NA	NA	XLOC_l2_009968	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009968), lincRNA [TCONS_l2_00018962]"	chr3:158502217-158502276	hs|3q25.32	Agilent_HUMAN_G3V2	TCONS_l2_00018962	TCONS_l2_00018962	chr3	158502217	158502276	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1568_PI429285431	0.91302466	A	0.906332	A	1.00464977522066	0	lncRNA	1556-1_{1..587}	"transcript_id ""ENST00000423466.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423466.2"" | genecode_v17"	chr3	177401415	177402001	+	ENSG00000228561.2	ENST00000423466.2	RP11-114M1.1	RP11-114M1.1-001	NA	NA	NA	inter
CUST_7581_PI429285431	0.9248759	A	0.92118394	A	1.00256234888358	0	lncRNA	9216-1_{1..462}	lnc-ALX4-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALX4-5:2	chr11	 43899533	 43899994	-	lnc-ALX4-5	lnc-ALX4-5:2	ENSG00000246250	ENSG00000246250.2	ALKBH3	NA	chr11:43902357-43909623	inter
CUST_1968_PI429285431	0.9242037	A	0.9188286	A	1.00373268458999	0	lncRNA	1961-1_{1..3000}	"transcript_id ""ENST00000508313.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000508313.1"" | genecode_v17"	chr4	170838912	170841911	-	ENSG00000248319.1	ENST00000508313.1	RP11-205M3.3	RP11-205M3.3-001	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20"	NA	inter
CUST_10074_PI429285431	3.9661179	P	4.3030567	P	0.791719450378944	0	lncRNA	11599-1_{1..958}	lnc-ASB4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASB4-2:1	chr7	 95070814	 95071771	+	lnc-ASB4-2	lnc-ASB4-2:1	XLOC_006176	linc-ASB4-2	PON2	NA	chr7:95060814-95064384	inter
CUST_181_PI429285431	2.792578	A	3.5426428	P	0.594576850925033	0	lncRNA	171-1_{1..374}	"transcript_id ""ENST00000452322.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452322.1"" | genecode_v17"	chr1	 22354832	 22355205	+	ENSG00000218510.3	ENST00000452322.1	LINC00339	LINC00339-002	NA	NA	NA	inter
CUST_52010_PI429285431	2.5417192	A	2.9035473	A	0.778177892484173	0	lncRNA	55542-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017137 range=chr21:15216173-15226304 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017137 range=chr21:15216173-15226304 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 15216173	 15219172	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7576_PI429285431	0.9208286	A	0.9240851	A	0.99774531184298	0	lncRNA	9211-1_{1..2242}	lnc-EXOSC6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EXOSC6-2:1	chr16	 70207031	 70209272	-	lnc-EXOSC6-2	lnc-EXOSC6-2:1	ENSG00000247228	AC009060.1	CLEC18C	NA	chr16:70207928-70217351	inter
CUST_37696_PI429285431	3.7654285	P	3.47807	P	1.22040373470376	0	lncRNA	38788-1_{1..381}	n346188|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1738|NULL|-1.3375000|-0.0936594	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346188|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1738|NULL|-1.3375000|-0.0936594	chr7	  2477401	  2477781	+	NA	NA	NA	NA	CHST12	NA	chr7:2467401-2474240	inter
CUST_47939_PI429285431	2.6004138	A	3.5838459	A	0.505775093685477	0	lncRNA	51831-1_{1..1057}	"gi|410172383|ref|XR_171756.1| PREDICTED: Homo sapiens uncharacterized LOC100507316, transcript variant 1 (LOC100507316), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410172383|ref|XR_171756.1| PREDICTED: Homo sapiens uncharacterized LOC100507316, transcript variant 1 (LOC100507316), misc_RNA"	NA	NA	NA	NA	NA	XR_171756.1	NA	NA	NA	NA	NA	Unknown
CUST_8834_PI429285431	0.9205874	A	0.9464228	A	0.982251655952045	0	lncRNA	10374-2_{3001..5351}	lnc-LRRFIP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRFIP2-1:1	chr3	 37408758	 37411108	-	lnc-LRRFIP2-1	lnc-LRRFIP2-1:1	ENSG00000246020	ENST00000498878	GOLGA4	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.91;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-12.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-16.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60chr3:37395758-37408370"	NA	inner
LNCA_21_P0005966	0.95023704	A	0.9167478	A	1.0234844901683	0	lncRNA	TCONS_00015440	NA	NA	NA	NA	XLOC_007088	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007088), lincRNA [TCONS_00015440]"	chr8:57448019-57447960	hs|8q12.1	Agilent_HUMAN_G3V2	TCONS_00015440	TCONS_00015440	chr8	 57447960	 57448019	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25227_PI429285431	4.7055993	P	4.723721	P	0.987517554889131	0	lncRNA	26758-1_{1..708}	lnc-NDUFS8-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFS8-1:10	chr11	 67788954	 67789661	+	lnc-NDUFS8-1	lnc-NDUFS8-1:10	ENSG00000006534.11	ALDH3B1	ALDH3B1	NA	chr11:67778954-67796743	inner
CUST_32820_PI429285431	3.4186208	A	3.67565	P	0.836809305577273	0	lncRNA	34455-1_{1..1943}	n339468|BC036879|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1906|NULL|-1.0816000|-0.3406226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339468|BC036879|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1906|NULL|-1.0816000|-0.3406226	chr3	121468131	121470073	+	NA	NA	NA	NA	GOLGB1	NA	chr3:121458131-121468602	inner
CUST_22941_PI429285431	0.9132621	A	0.9117908	A	1.00102034764759	0	lncRNA	24517-1_{1..430}	lnc-RPL7-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPL7-1:3	chr8	 74227801	 74228230	-	lnc-RPL7-1	lnc-RPL7-1:3	ENSG00000250295.2	RP11-434I12.2	RDH10	NA	chr8:74217801-74237516	inner
CUST_34735_PI429285431	8.375362	P	8.597659	P	0.857199551329449	0	lncRNA	36180-1_{1..1922}	n341642|AK055761|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4113|NULL|-1.2643900|-0.1680434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341642|AK055761|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4113|NULL|-1.2643900|-0.1680434	chr9	  1046078	  1047999	+	NA	NA	NA	NA	DMRT2	NA	chr9:1050346-1057554	inter
CUST_4549_PI429285431	0.91719013	A	0.90454304	A	1.00880483126293	0	lncRNA	4497-1_{1..746}	"transcript_id ""ENST00000422082.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422082.2"" | genecode_v17"	chr13	 19496029	 19496774	-	ENSG00000231358.2	ENST00000422082.2	RP11-442J17.3	RP11-442J17.3-001	NA	NA	NA	inter
CUST_23569_PI429285431	4.0512776	P	4.512616	P	0.726312140297461	0	lncRNA	25137-1_{1..538}	lnc-LRRC32-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC32-5:2	chr11	 76479154	 76479691	-	lnc-LRRC32-5	lnc-LRRC32-5:2	ENSG00000254632.1	RP11-21L23.4	NA	NA	NA	inter
CUST_8846_PI429285431	2.8920975	A	2.4510572	A	1.35758290184221	0	lncRNA	10385-1_{1..279}	lnc-ZFC3H1-8:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ZFC3H1-8:3	chr12	 73537533	 73537811	-	lnc-ZFC3H1-8	lnc-ZFC3H1-8:3	ENSG00000258294	RP11-314D7.1	NA	NA	NA	inter
CUST_23325_PI429285431	0.91016793	A	1.740295	A	0.562479697956332	0	lncRNA	24896-1_{1..607}	lnc-LRRC30-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC30-2:1	chr18	  7079674	  7080280	+	lnc-LRRC30-2	lnc-LRRC30-2:1	ENSG00000264475.1	RP11-76K13.3	LAMA1	"hg19_refFlat_LAMA1:range=chr18:6942078-71177195'pad=0,hg19_refFlat_LAMA1:range=chr18:6942078-71177195'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60chr18:7069674-7090122"	NA	inner
LNCA_21_P0014366	0.9287578	A	0.9113789	A	1.01211898244094	0	lncRNA	XR_109472	XR_109472	XR_109472	NA	NA	LOC100506787	uncharacterized LOC100506787	NA	THC2619848	NA	"PREDICTED: Homo sapiens hypothetical LOC100506787 (LOC100506787), miscRNA [XR_109472]"	chr18:24006003-24006062	hs|18q11.2	Agilent_HUMAN_G3V2	XR_109472	XR_109472	chr18	 24006003	 24006062	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35618_PI429285431	7.7425957	P	5.7716837	P	3.92015853635297	0	lncRNA	37032-1_{1..1277}	n342758|M30627|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5261|NULL|7.8754800|-0.3247955	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342758|M30627|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5261|NULL|7.8754800|-0.3247955	chr11	 27911647	 27912923	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20768_PI429285431	0.9300033	A	0.91480595	A	1.01058967821767	0	lncRNA	22401-1_{1..527}	lnc-PROK1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PROK1-1:2	chr1	110960869	110961395	+	lnc-PROK1-1	lnc-PROK1-1:2	ENSG00000224699.1	RP11-225L12.2	NA	NA	NA	inter
CUST_30666_PI429285431	1.5428545	A	2.629838	A	0.470744616112322	0	lncRNA	32448-1_{1..434}	n336111|X91013|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324436|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324436|0.0956629|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336111|X91013|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324436|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324436|0.0956629|-1.0000000	chr20	 61467845	 61468278	+	NA	NA	NA	NA	TCFL5	NA	chr20:61472467-61482030	inner
CUST_3368_PI429285431	0.9212966	A	0.91098744	A	1.00717135708959	0	lncRNA	3343-1_{1..395}	"transcript_id ""ENST00000605459.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605459.1"" | genecode_v17"	chr9	 13416398	 13416792	-	ENSG00000270547.1	ENST00000605459.1	RP11-536O18.2	RP11-536O18.2-002	NA	NA	NA	inter
CUST_29335_PI429285431	0.9020863	A	0.8948711	A	1.00501372238995	0	lncRNA	31087-1_{1..991}	n332576|AK311623|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000430489|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000430489|-0.9808340|-0.2937682	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332576|AK311623|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000430489|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000430489|-0.9808340|-0.2937682	chr2	232643433	232644423	-	NA	NA	NA	NA	COPS7B	NA	chr2:232651162-232655989	inner
CUST_43872_PI429285431	6.4073043	P	6.76034	P	0.782934922014757	0	lncRNA	48592-1_{1..3000}	"gi|299890876|ref|NR_033935.1| Homo sapiens dynactin 1 (DCTN1), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299890876|ref|NR_033935.1| Homo sapiens dynactin 1 (DCTN1), transcript variant 7, non-coding RNA"	Chr2	 74588281	 74591280	-	1639	NR_033935.1	NA	NA	NA	NA	NA	inter
CUST_11420_PI429285431	0.92527246	A	0.9231516	A	1.0014711492092	0	lncRNA	12987-1_{1..575}	lnc-ITPR3-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITPR3-1:6	chr6	 33882234	 33882808	+	lnc-ITPR3-1	lnc-ITPR3-1:6	XLOC_005263	linc-HMGA1-2	NA	NA	NA	inter
CUST_28747_PI429285431	0.9287195	A	0.9106971	A	1.01257052890156	0	lncRNA	30450-1_{1..443}	n326144|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096171|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096171|-1.0337600|-0.4462174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326144|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096171|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096171|-1.0337600|-0.4462174	chr1	241317959	241318401	-	NA	NA	NA	NA	RGS7	NA	chr1:241307959-241332523	inner
CUST_27316_PI429285431	0.9149437	A	0.9141689	A	1.0005371946729	0	lncRNA	28876-1_{1..474}	n324470|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041307|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041307|-1.1982400|-0.4461678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324470|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041307|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041307|-1.1982400|-0.4461678	chr6	 80186732	 80187205	+	NA	NA	NA	NA	LCA5	NA	chr6:80194708-80197741	inter
CUST_23282_PI429285431	3.6707718	P	3.646274	P	1.01712557057193	0	lncRNA	24853-1_{1..2658}	lnc-MICB-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MICB-3:1	chr6	 31431148	 31433805	+	lnc-MICB-3	lnc-MICB-3:1	ENSG00000206337.6	HCP5	HCP5	NA	chr6:31429623-31433586	inter
CUST_19288_PI429285431	7.3480673	P	7.4369674	P	0.940239307505071	0	lncRNA	20956-1_{1..3000}	lnc-TCL1B-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TCL1B-1:5	chr14	 96158268	 96161267	+	lnc-TCL1B-1	lnc-TCL1B-1:5	ENSG00000259084.1	RP11-1070N10.6	TCL1B	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90chr14:96152754-96158980"	NA	inner
CUST_50127_PI429285431	0.90136296	A	1.4599273	A	0.678977494232957	0	lncRNA	53855-1_{1..2894}	hg19_lincRNAsTranscripts_TCONS_l2_00029501 range=chr9:99857311-99949981 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029501 range=chr9:99857311-99949981 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 99857311	 99860204	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38262_PI429285431	0.91224194	A	0.9024501	A	1.00681027143553	0	lncRNA	39318-2_{3001..5306}	n381805|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qgw.2||4.8556400|-0.2066500	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n381805|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qgw.2||4.8556400|-0.2066500	chr11	133769329	133771634	-	NA	NA	NA	NA	LOC646543	NA	chr11:133778459-133781635	inter
LNCA_21_P0008698	4.324722	P	5.024616	P	0.615617436640828	0	lncRNA	TCONS_00023563	NA	NA	NA	NA	XLOC_011387	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011387), lincRNA [TCONS_00023563]"	chr15:101273674-101274043	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_00023563	TCONS_00023563	chr15	101273674	101274043	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27701_PI429285431	8.940685	P	8.968943	P	0.980603625026749	0	lncRNA	29280-1_{1..533}	n324912|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080171|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080171|-1.0814900|-0.1674932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n324912|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080171|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080171|-1.0814900|-0.1674932	chr20	 61909872	 61910404	+	NA	NA	NA	NA	COL20A1	NA	chr20:61924538-61928318	inner
CUST_23053_PI429285431	2.0311258	A	1.7886167	A	1.18304840216802	0	lncRNA	24624-1_{1..517}	lnc-CLN5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-CLN5-2:2	chr13	 77661685	 77662201	+	lnc-CLN5-2	lnc-CLN5-2:2	ENSG00000236051.1	MYCBP2-AS1	MYCBP2	"hg19_refFlat_MYCBP2:range=chr13:77619513-779009105'pad=0,hg19_refFlat_MYCBP2:range=chr13:77619513-779009105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90chr13:77651685-77671911"	NA	inner
CUST_5109_PI429285431	0.8969042	A	0.89383006	A	1.00213310330838	0	lncRNA	5049-1_{1..561}	"transcript_id ""ENST00000567647.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567647.1"" | genecode_v17"	chr15	 24803319	 24803879	+	ENSG00000259905.1	ENST00000567647.1	PWRN1	PWRN1-005	NA	NA	NA	inter
CUST_47115_PI429285431	3.4250326	P	3.2911382	A	1.09725161983468	0	lncRNA	51197-1_{1..560}	"gi|310123872|ref|XR_109514.1| PREDICTED: Homo sapiens uncharacterized LOC100507342, transcript variant 1 (LOC100507342), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123872|ref|XR_109514.1| PREDICTED: Homo sapiens uncharacterized LOC100507342, transcript variant 1 (LOC100507342), misc_RNA"	Chr19	 37808803	 37809362	+	100507342	XR_109514.2	NA	NA	NA	NA	NA	inter
CUST_47818_PI429285431	9.518757	P	8.800116	P	1.64563114101717	0	lncRNA	51732-1_{1..2203}	"gi|397139885|ref|XR_159136.1| PREDICTED: Homo sapiens uncharacterized LOC100996302 (LOC100996302), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139885|ref|XR_159136.1| PREDICTED: Homo sapiens uncharacterized LOC100996302 (LOC100996302), misc_RNA"	NT_167243.1	    30546	    32748	-	100996302	XR_159136.1	NA	NA	NA	NA	NA	Unknown
CUST_1325_PI429285431	2.632045	A	2.636712	A	0.996770308817699	0	lncRNA	1314-1_{1..543}	"transcript_id ""ENST00000414382.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414382.1"" | genecode_v17"	chr3	 27862979	 27863521	+	ENSG00000225548.1	ENST00000414382.1	AC098973.2	AC098973.2-002	NA	NA	NA	inter
CUST_50682_PI429285431	3.2739	P	3.5892935	P	0.80363176753813	0	lncRNA	54354-1_{1..2824}	hg19_lincRNAsTranscripts_TCONS_l2_00003540 range=chr10:47588651-47640742 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003540 range=chr10:47588651-47640742 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 47588651	 47591474	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20267_PI429285431	1.6444561	A	2.0734746	A	0.742766935603412	0	lncRNA	21910-1_{1..494}	lnc-AC127496.3-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-AC127496.3-7:1	chr17	 78915637	 78916130	-	lnc-AC127496.3-7	lnc-AC127496.3-7:1	ENSG00000262313.1	CTD-2561B21.4	RPTOR	"hg19_refFlat_RPTOR:range=chr17:78519430-789381305'pad=0,hg19_refFlat_RPTOR:range=chr17:78519430-789381305'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50chr17:78905637-78925833"	NA	inner
CUST_41801_PI429285431	0.8996148	A	0.89203113	A	1.00527043963794	0	lncRNA	43385-1_{1..120}	ENST00000577504 ncrna:miRNA chromosome:GRCh37:3:151283664:151283783:-1 gene:ENSG00000264330 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577504 ncrna:miRNA chromosome:GRCh37:3:151283664:151283783:-1 gene:ENSG00000264330 gene_biotype:miRNA transcript_biotype:miRNA	chr3	151283664	151283783	-	ENSG00000264330	ENST00000577504	NA	NA	NA	NA	NA	inter
LNCA_21_P0002778	3.6465557	P	3.7298667	P	0.943888924240072	0	lncRNA	ENST00000476987	NA	NA	NA	NA	XLOC_002860	NA	ENST00000476987	NA	NA	"BROAD Institute lincRNA (XLOC_002860), lincRNA [TCONS_00005613]"	chr3:147844913-147844972	hs|3q24	Agilent_HUMAN_G3V2	ENST00000476987	ENST00000476987	chr3	147844913	147844972	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51513_PI429285431	4.388335	P	4.5048194	P	0.922432724185304	0	lncRNA	55088-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00010376 range=chr16:89979190-89983349 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010376 range=chr16:89979190-89983349 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 89979190	 89982189	-	NA	NA	NA	NA	TUBB3	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr16:89988417-89993349"	NA	inter
CUST_33052_PI429285431	5.0035186	P	4.3851614	P	1.53512613416693	0	lncRNA	34664-1_{1..3000}	n339742|AK055652|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2188|NULL|-1.1308000|-0.3698997	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339742|AK055652|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2188|NULL|-1.1308000|-0.3698997	chr3	191113179	191116178	+	NA	NA	NA	NA	CCDC50	NA	chr3:191103179-191116459	inner
CUST_39396_PI429285431	3.7467945	P	3.948501	P	0.869521436406134	0	lncRNA	40359-1_{1..1403}	n386566|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010oci.1||1.9870300|-0.1158407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386566|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010oci.1||1.9870300|-0.1158407	chr1	 16972863	 16974265	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38613_PI429285431	0.91310954	A	0.91609526	A	0.997932596628452	0	lncRNA	39617-1_{1..1760}	n383743|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tru.1||1.2878300|-0.2890429	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n383743|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tru.1||1.2878300|-0.2890429	chr2	131438800	131440559	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43910_PI429285431	3.2349842	P	0.9158463	A	4.99033926641963	0	lncRNA	48624-1_{1..3000}	"gi|325652003|ref|NR_028356.1| Homo sapiens mitochondrial ribosomal protein L30 (MRPL30), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|325652003|ref|NR_028356.1| Homo sapiens mitochondrial ribosomal protein L30 (MRPL30), transcript variant 3, non-coding RNA"	Chr2	 99797542	 99800541	+	51263	NR_028356.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20"	NA	inter
CUST_9085_PI429285431	0.903282	A	0.898272	A	1.00347870406974	0	lncRNA	10606-1_{1..908}	lnc-CAMK1G-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CAMK1G-1:4	chr1	209605549	209606456	+	lnc-CAMK1G-1	lnc-CAMK1G-1:4	ENSG00000230937	CTA-55I10.1	LOC642587	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90chr1:209602168-209605894"	NA	inter
CUST_21390_PI429285431	2.4119678	A	2.9745321	A	0.677097594986956	0	lncRNA	23012-1_{1..316}	lnc-GATAD2B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GATAD2B-1:1	chr1	153724546	153724861	-	lnc-GATAD2B-1	lnc-GATAD2B-1:1	ENSG00000233222.2	RP11-216N14.9	INTS3	"hg19_refFlat_INTS3:range=chr1:153701111-1537457465'pad=0,hg19_refFlat_INTS3:range=chr1:153701111-1537457465'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.30chr1:153714546-153734652"	NA	inner
CUST_43380_PI429285431	4.426852	P	4.22126	P	1.15315944078214	0	lncRNA	48194-1_{1..492}	"gi|341915080|ref|XR_132697.1| PREDICTED: Homo sapiens uncharacterized LOC100129476 (LOC100129476), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915080|ref|XR_132697.1| PREDICTED: Homo sapiens uncharacterized LOC100129476 (LOC100129476), misc_RNA"	Chr1	  7110002	  7110493	-	100129476	XR_132697.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0002211	3.8849244	P	4.5881147	P	0.614212466625799	0	lncRNA	TCONS_00003670	NA	NA	NA	NA	XLOC_001460	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001460), lincRNA [TCONS_00003670]"	chr2:47102269-47102328	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00003670	TCONS_00003670	chr2	 47102269	 47102328	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004483	0.9264311	A	0.9152393	A	1.00778773247903	0	lncRNA	TCONS_00010608	NA	NA	NA	NA	XLOC_004260	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004260), lincRNA [TCONS_00010608]"	chr5:3340372-3340431	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00010608	TCONS_00010608	chr5	  3340372	  3340431	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4659_PI429285431	4.6474853	P	4.870896	P	0.85653808461047	0	lncRNA	4605-1_{1..428}	"transcript_id ""ENST00000457858.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457858.1"" | genecode_v17"	chr13	 80378553	 80378980	+	ENSG00000229011.1	ENST00000457858.1	RP11-276G3.1	RP11-276G3.1-001	NA	NA	NA	inter
CUST_20002_PI429285431	0.92181	A	0.9133779	A	1.00586179984519	0	lncRNA	21655-1_{1..380}	lnc-SCP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SCP2-1:1	chr1	 53347272	 53347651	+	lnc-SCP2-1	lnc-SCP2-1:1	ENSG00000242391.1	RP4-631H13.2	ZYG11A	NA	chr1:53337272-53357402	inner
CUST_43724_PI429285431	3.661954	P	2.7538886	A	1.87652745748872	0	lncRNA	48468-2_{3001..4589}	"gi|315259087|ref|NR_037667.1| Homo sapiens integrator complex subunit 7 (INTS7), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315259087|ref|NR_037667.1| Homo sapiens integrator complex subunit 7 (INTS7), transcript variant 5, non-coding RNA"	Chr1	212116741	212118329	-	25896	NR_037667.1	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70"	NA	inter
CUST_7299_PI429285431	0.9123551	A	1.5028934	A	0.664095072912818	0	lncRNA	8335-1_{1..312}	"transcript_id ""ENST00000411050.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411050.1"" | genecode_v17"	chr12	114942681	114942992	-	ENSG00000222982.1	ENST00000411050.1	RN7SKP216	RN7SKP216-201	NA	NA	NA	inter
CUST_27564_PI429285431	6.849844	P	6.920844	P	0.951977908497532	0	lncRNA	29142-2_{3001..5492}	n324753|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000314912|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000314912|-0.9636790|-0.3455938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324753|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000314912|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000314912|-0.9636790|-0.3455938	chr22	 17341026	 17343517	+	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-61.30;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80"	NA	inter
CUST_26549_PI429285431	7.2048755	P	7.4410405	P	0.848999141469433	0	lncRNA	28053-1_{1..659}	lnc-C12orf43-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C12orf43-1:2	chr12	121418447	121419105	-	lnc-C12orf43-1	lnc-C12orf43-1:2	ENSG00000241388.2	HNF1A-AS1	HNF1A	NA	chr12:121416549-121428709	inner
CUST_29203_PI429285431	6.0144997	P	5.9091516	P	1.07575392192892	0	lncRNA	30950-1_{1..2077}	n326720|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001814|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001814|-1.0676300|-0.2646974	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326720|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001814|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001814|-1.0676300|-0.2646974	chr1	  4371970	  4374046	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4877_PI429285431	0.90294874	A	1.1390216	A	0.8490533658736	0	lncRNA	4820-1_{1..578}	"transcript_id ""ENST00000556316.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556316.1"" | genecode_v17"	chr14	 69705883	 69706460	-	ENSG00000258520.1	ENST00000556316.1	RP11-363J20.2	RP11-363J20.2-001	GALNTL1	"hg19_refFlat_GALNTL1:range=chr14:69727008-698188855'pad=0,hg19_refFlat_GALNTL1:range=chr14:69727008-698188855'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.60chr14:69726681-69737284"	NA	inner
CUST_43022_PI429285431	1.3069638	A	1.4998332	A	0.874863958400161	0	lncRNA	46360-1_{1..71}	ENST00000516074 ncrna:snRNA chromosome:GRCh37:20:25591789:25591859:1 gene:ENSG00000251883 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516074 ncrna:snRNA chromosome:GRCh37:20:25591789:25591859:1 gene:ENSG00000251883 gene_biotype:snRNA transcript_biotype:snRNA	chr20	 25591789	 25591859	+	ENSG00000251883	ENST00000516074	NA	NA	NANP	NA	chr20:25593571-25601859	inter
CUST_33876_PI429285431	1.0932434	A	0.90766233	A	1.13727493785482	0	lncRNA	35420-1_{1..2466}	n340665|AK094723|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3127|NULL|-1.0937700|-0.1738857	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340665|AK094723|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3127|NULL|-1.0937700|-0.1738857	chr17	 39821817	 39824282	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27794_PI429285431	4.1850486	P	4.346732	P	0.893981325389066	0	lncRNA	29379-2_{3001..3168}	n325021|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078391|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078391|-0.7765790|-0.2706469	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325021|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078391|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078391|-0.7765790|-0.2706469	chr20	 25072424	 25072591	-	NA	NA	NA	NA	VSX1	NA	chr20:25059424-25062767	inter
CUST_4604_PI429285431	4.7199926	P	5.151327	P	0.741575558373231	0	lncRNA	4553-1_{1..3000}	"transcript_id ""ENST00000444442.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444442.1"" | genecode_v17"	chr13	 44118054	 44121053	+	ENSG00000233821.1	ENST00000444442.1	ENOX1-AS1	ENOX1-AS1-001	ENOX1	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10chr13:44108054-44132192"	NA	inner
CUST_29641_PI429285431	3.783719	P	3.695123	P	1.06333486398176	0	lncRNA	31402-1_{1..317}	n333217|AF479408|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000080429|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000080429|0.5806420|-0.1445589	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333217|AF479408|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000080429|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000080429|0.5806420|-0.1445589	chr1	  9101900	  9102216	-	NA	NA	NA	NA	SLC2A5	NA	chr1:9097005-9127604	inner
CUST_11280_PI429285431	0.9218339	A	0.9107942	A	1.00768148935084	0	lncRNA	12840-1_{1..1093}	lnc-VAV3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VAV3-1:3	chr1	106615580	106616672	-	lnc-VAV3-1	lnc-VAV3-1:3	XLOC_000950	linc-AMY1A-4	NA	NA	NA	inter
CUST_16038_PI429285431	4.9006	P	4.9405713	P	0.972674296944837	0	lncRNA	17736-1_{1..442}	lnc-DDX51-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DDX51-5:1	chr12	132303797	132304238	-	lnc-DDX51-5	lnc-DDX51-5:1	XLOC_010271	linc-STX2-3	MMP17	NA	chr12:132312941-132313828	inter
LNCA_21_P0007299	5.881588	P	6.4723387	P	0.663997309070347	0	lncRNA	TCONS_00019540	NA	NA	NA	NA	XLOC_009333	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009333), lincRNA [TCONS_00019540]"	NA	NA	Agilent_HUMAN_G3V2	TCONS_00019540	TCONS_00019540	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008301	0.98454195	A	0.9617949	A	1.0158920094275	0	lncRNA	TCONS_00022436	NA	NA	NA	NA	XLOC_010773	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010773), lincRNA [TCONS_00022436]"	chr14:25571356-25571415	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022436	TCONS_00022436	chr14	 25571356	 25571415	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22750_PI429285431	1.2180936	A	0.92024845	A	1.22930691394045	0	lncRNA	24333-1_{1..369}	lnc-MBL2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MBL2-3:1	chr10	 54515070	 54515438	-	lnc-MBL2-3	lnc-MBL2-3:1	ENSG00000228651.1	RP11-556E13.1	MBL2	NA	chr10:54525140-54525169	inter
CUST_47876_PI429285431	4.494998	P	5.2419586	P	0.595857559934134	0	lncRNA	51772-1_{1..928}	"gi|410171510|ref|XR_171219.1| PREDICTED: Homo sapiens uncharacterized LOC100287049 (LOC100287049), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171510|ref|XR_171219.1| PREDICTED: Homo sapiens uncharacterized LOC100287049 (LOC100287049), misc_RNA"	NA	NA	NA	NA	NA	XR_171219.1	NA	NA	NA	NA	NA	Unknown
CUST_23231_PI429285431	2.189564	A	2.3349237	A	0.904153921242957	0	lncRNA	24803-1_{1..307}	lnc-SPCS3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPCS3-2:2	chr4	177627057	177627363	+	lnc-SPCS3-2	lnc-SPCS3-2:2	ENSG00000248388.1	RP11-313E19.2	VEGFC	NA	chr4:177617057-177637223	inner
LNCA_21_P0012932	1.0000427	A	0.9493201	A	1.03578358495088	0	lncRNA	TCONS_l2_00023263	NA	NA	NA	NA	XLOC_l2_012323	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012323), lincRNA [TCONS_l2_00023263]"	chr5:175572234-175572175	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_l2_00023263	TCONS_l2_00023263	chr5	175572175	175572234	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48606_PI429285431	5.190543	P	5.524852	P	0.79316394317755	0	lncRNA	52453-1_{1..317}	hg19_lincRNAsTranscripts_TCONS_l2_00014569 range=chr2:51430144-51452705 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014569 range=chr2:51430144-51452705 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 51430144	 51430460	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46223_PI429285431	8.0952635	P	8.375222	P	0.82361470870467	0	lncRNA	50463-1_{1..3000}	"gi|224586829|ref|NR_003923.2| Homo sapiens guanylate cyclase 1, soluble, beta 2 (pseudogene) (GUCY1B2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224586829|ref|NR_003923.2| Homo sapiens guanylate cyclase 1, soluble, beta 2 (pseudogene) (GUCY1B2), non-coding RNA"	Chr13	 51568647	 51571646	-	2974	NR_003923.2	NA	NA	NA	NA	NA	inter
CUST_50611_PI429285431	0.9277775	A	0.9286099	A	0.999423190705381	0	lncRNA	54296-1_{1..808}	hg19_lincRNAsTranscripts_TCONS_l2_00002837 range=chr10:978798-981325 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002837 range=chr10:978798-981325 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	   978798	   979605	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11892_PI429285431	1.2439128	A	0.91998136	A	1.25173697198248	0	lncRNA	13474-1_{1..223}	lnc-DERA-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DERA-1:3	chr12	 16590322	 16590544	+	lnc-DERA-1	lnc-DERA-1:3	XLOC_009677	linc-PIK3C2G-2	NA	NA	NA	inter
CUST_31189_PI429285431	0.9260428	A	0.9379126	A	0.9918062349934	0	lncRNA	32983-1_{1..1893}	n337629|AK027253|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|8|NULL|-1.2520700|-0.2907262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337629|AK027253|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|8|NULL|-1.2520700|-0.2907262	chrX	 11679222	 11681114	-	NA	NA	NA	NA	ARHGAP6	NA	chrX:11669222-11683821	inner
CUST_28248_PI429285431	1.0631896	A	0.9048734	A	1.11598388921425	0	lncRNA	29884-1_{1..665}	n325541|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255324|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255324|-0.9704960|-0.1713737	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325541|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255324|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255324|-0.9704960|-0.1713737	chr17	 65469497	 65470161	+	NA	NA	NA	NA	PITPNC1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10chr17:65459497-65501274"	NA	inner
CUST_27193_PI429285431	0.9132283	A	0.90652263	A	1.00465883503728	0	lncRNA	28735-1_{1..2002}	n324325|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280510|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280510|-0.2095980|-0.2656574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324325|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280510|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280510|-0.2095980|-0.2656574	chr6	159927976	159929977	-	NA	NA	NA	NA	NA	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-26.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20"	NA	inter
CUST_15019_PI429285431	12.358344	P	12.067152	P	1.22365087896615	0	lncRNA	16681-1_{1..369}	lnc-KIDINS220-6:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIDINS220-6:7	chr2	  8441871	  8442239	-	lnc-KIDINS220-6	lnc-KIDINS220-6:7	XLOC_001974	linc-CMPK2-2	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-27.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70"	NA	inter
CUST_11536_PI429285431	2.4116838	A	2.8625581	A	0.731599350802947	0	lncRNA	13107-2_{3001..5196}	lnc-OIP5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OIP5-1:2	chr15	 41600681	 41602876	-	lnc-OIP5-1	lnc-OIP5-1:2	XLOC_011448	linc-EXD1	OIP5	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00chr15:41601466-41608727"	NA	inter
CUST_35111_PI429285431	0.92106706	A	1.1575587	A	0.848806941676368	0	lncRNA	36517-1_{1..237}	n342080|AB019569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4562|NULL|-1.1391400|-0.4059945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342080|AB019569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4562|NULL|-1.1391400|-0.4059945	chr6	 87795302	 87795538	+	NA	NA	NA	NA	CGA	NA	chr6:87795222-87804824	inner
CUST_15555_PI429285431	1.7676027	A	2.487269	A	0.607237882028674	0	lncRNA	17240-1_{1..3000}	lnc-SAP30-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SAP30-2:1	chr4	174431483	174434482	+	lnc-SAP30-2	lnc-SAP30-2:1	XLOC_003782	linc-KIAA1712-5	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20"	NA	inter
CUST_11321_PI429285431	1.497796	A	0.92353237	A	1.4889173067068	0	lncRNA	12884-1_{1..216}	lnc-MYB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYB-1:1	chr6	135581954	135582169	+	lnc-MYB-1	lnc-MYB-1:1	XLOC_005471	linc-PDE7B	NA	NA	NA	inter
CUST_52033_PI429285431	0.91408604	A	0.90805644	A	1.00418814611301	0	lncRNA	55563-1_{1..2464}	hg19_lincRNAsTranscripts_TCONS_l2_00016983 range=chr21:20616277-20633315 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016983 range=chr21:20616277-20633315 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr21	 20616277	 20618740	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_52163_PI429285431	9.184259	P	9.674552	P	0.711880505792397	0	lncRNA	55684-2_{3001..4639}	hg19_lincRNAsTranscripts_TCONS_l2_00017934 range=chr22:23738063-23744587 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017934 range=chr22:23738063-23744587 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 23741063	 23742701	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21811_PI429285431	1.1510123	A	1.9774375	A	0.563924840818797	0	lncRNA	23420-2_{3001..3507}	lnc-TCL1B-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TCL1B-1:7	chr14	 96161268	 96161774	+	lnc-TCL1B-1	lnc-TCL1B-1:7	ENSG00000259084.1	RP11-1070N10.6	TCL1B	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80chr14:96152754-96158980"	NA	inner
CUST_3714_PI429285431	0.9370489	A	0.96159554	A	0.983129493738359	0	lncRNA	3682-1_{1..1032}	"transcript_id ""ENST00000593568.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593568.1"" | genecode_v17"	chr10	 67330633	 67331664	+	ENSG00000228065.5	ENST00000593568.1	RP11-222A11.1	RP11-222A11.1-004	NA	NA	NA	inter
CUST_9358_PI429285431	3.0781713	A	3.1301253	A	0.96462894106602	0	lncRNA	10862-1_{1..733}	lnc-NBPF16-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NBPF16-4:1	chr1	148556692	148557424	+	lnc-NBPF16-4	lnc-NBPF16-4:1	XLOC_000390	linc-NBPF15-1	NBPF15	NA	chr1:148558188-148567204	inter
CUST_46961_PI429285431	0.9180106	A	1.4450116	A	0.693995878466343	0	lncRNA	51066-1_{1..1317}	"gi|341916059|ref|XR_110817.2| PREDICTED: Homo sapiens uncharacterized LOC100505543, transcript variant 3 (LOC100505543), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341916059|ref|XR_110817.2| PREDICTED: Homo sapiens uncharacterized LOC100505543, transcript variant 3 (LOC100505543), misc_RNA"	NA	NA	NA	NA	NA	XR_110817.2	NA	NA	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20"	NA	Unknown
CUST_24516_PI429285431	4.759975	P	4.7934484	P	0.977065103690209	0	lncRNA	26067-1_{1..596}	lnc-ERP29-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ERP29-1:1	chr12	112503326	112503921	+	lnc-ERP29-1	lnc-ERP29-1:1	ENSG00000258323.1	RP1-267L14.3	NAA25	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70chr12:112493326-112513559"	NA	inner
LNCA_21_P0007743	0.9213201	A	0.91888875	A	1.00168670428561	0	lncRNA	TCONS_00020885	NA	NA	NA	NA	XLOC_010163	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010163), lincRNA [TCONS_00020885]"	chr12:95776250-95774698	hs|12q22	Agilent_HUMAN_G3V2	TCONS_00020885	TCONS_00020885	chr12	 95774698	 95776250	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009778	1.462289	A	3.1612005	P	0.308018412717258	0	lncRNA	ENST00000444227	XR_132661	XR_132661	NA	Hs.664152	XLOC_013429	NA	ENST00000444227	THC2480319	NA	"PREDICTED: Homo sapiens hepatocellular carcinoma-associated antigen HCA25a (LOC100506634), miscRNA [XR_132661]"	chr19:58918077-58918018	hs|19q13.43	Agilent_HUMAN_G3V2	ENST00000444227	ENST00000444227	chr19	 58918018	 58918077	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48025_PI429285431	3.1179018	A	3.1584282	P	0.972300116936857	0	lncRNA	51907-1_{1..3000}	"gi|410173650|ref|XR_172318.1| PREDICTED: Homo sapiens uncharacterized LOC100130157 (LOC100130157), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173650|ref|XR_172318.1| PREDICTED: Homo sapiens uncharacterized LOC100130157 (LOC100130157), misc_RNA"	NA	NA	NA	NA	NA	XR_172318.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70"	NA	Unknown
CUST_50978_PI429285431	5.137712	P	5.4310145	P	0.816031925067446	0	lncRNA	54620-2_{3001..3160}	hg19_lincRNAsTranscripts_TCONS_l2_00006386 range=chr12:102718465-102745141 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006386 range=chr12:102718465-102745141 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	102721465	102721624	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12629_PI429285431	0.9053017	A	1.303972	A	0.758557106410387	0	lncRNA	14245-1_{1..1039}	lnc-ANXA5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANXA5-1:1	chr4	122486103	122487141	-	lnc-ANXA5-1	lnc-ANXA5-1:1	XLOC_004059	linc-QRFPR	NA	NA	NA	inter
LNCA_21_P0003571	0.9296562	A	0.9847626	A	0.962523453551533	0	lncRNA	TCONS_00007983	NA	NA	NA	NA	XLOC_003453	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003453), lincRNA [TCONS_00007983]"	chr4:10751073-10751132	hs|4p16.1	Agilent_HUMAN_G3V2	TCONS_00007983	TCONS_00007983	chr4	 10751073	 10751132	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19800_PI429285431	6.0367174	P	6.506352	P	0.722147477210618	0	lncRNA	21457-1_{1..577}	lnc-HLA-DMA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HLA-DMA-1:1	chr6	 32940321	 32940897	-	lnc-HLA-DMA-1	lnc-HLA-DMA-1:1	ENSG00000263756.1	XXbac-BPG181M17.6	BRD2	NA	chr6:32936437-32949282	inner
CUST_33504_PI429285431	0.9786551	A	0.97087693	A	1.00540597644622	0	lncRNA	35075-2_{3001..3116}	n340242|BC047543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2703|NULL|-1.0259500|-0.3810018	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340242|BC047543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2703|NULL|-1.0259500|-0.3810018	chr4	145430051	145430166	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_815_PI429285431	1.0815946	A	2.213909	A	0.456183319472591	0	lncRNA	808-1_{1..533}	"transcript_id ""ENST00000426527.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426527.1"" | genecode_v17"	chr2	 23580387	 23580919	-	ENSG00000223634.1	ENST00000426527.1	AC012506.3	AC012506.3-001	NA	NA	NA	inter
CUST_46958_PI429285431	7.020578	P	7.322989	P	0.810896111752995	0	lncRNA	51063-1_{1..2044}	"gi|302393587|ref|NR_036516.1| Homo sapiens chromosome 17 open reading frame 62 (C17orf62), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302393587|ref|NR_036516.1| Homo sapiens chromosome 17 open reading frame 62 (C17orf62), transcript variant 9, non-coding RNA"	Chr17	 80400462	 80402505	-	79415	NR_036516.1	NA	NA	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.11;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00"	NA	inter
LNCA_21_P0006184	1.997643	A	2.5762296	A	0.669619478483345	0	lncRNA	TCONS_00016084	NA	NA	NA	NA	XLOC_007474	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007474), lincRNA [TCONS_00016084]"	chr9:98312987-98315239	hs|9q22.32	Agilent_HUMAN_G3V2	TCONS_00016084	TCONS_00016084	chr9	 98312987	 98315239	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41462_PI429285431	1.1909928	A	1.4699608	A	0.824180365655996	0	lncRNA	42652-1_{1..65}	ENST00000584984 ncrna:miRNA chromosome:GRCh37:9:96581639:96581703:1 gene:ENSG00000265347 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584984 ncrna:miRNA chromosome:GRCh37:9:96581639:96581703:1 gene:ENSG00000265347 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 96581639	 96581703	+	ENSG00000265347	ENST00000584984	NA	NA	NA	NA	NA	inter
CUST_10565_PI429285431	1.2312467	A	2.0882566	A	0.552095635001573	0	lncRNA	12097-1_{1..1221}	lnc-RAMP3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAMP3-2:1	chr7	 45243734	 45244954	+	lnc-RAMP3-2	lnc-RAMP3-2:1	XLOC_006073	linc-ADCY1-3	NA	NA	NA	inter
CUST_49905_PI429285431	3.6793454	P	3.9605927	P	0.822879279091962	0	lncRNA	53654-1_{1..358}	hg19_lincRNAsTranscripts_TCONS_l2_00026086 range=chr7:89748938-89751496 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026086 range=chr7:89748938-89751496 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 89748938	 89749295	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19557_PI429285431	0.91658854	A	0.9119929	A	1.00319053386185	0	lncRNA	21213-1_{1..423}	lnc-PRDM11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRDM11-1:1	chr11	 45275736	 45276158	+	lnc-PRDM11-1	lnc-PRDM11-1:1	ENSG00000254497.1	CTD-2560E9.5	SYT13	"hg19_refFlat_SYT13:range=chr11:45265603-453077585'pad=0,hg19_refFlat_SYT13:range=chr11:45265603-453077585'pad=0 3'pad=0 strand=- repeatMasking=none,-92.80;hg19_refFlat_SYT13:range=chr11:45265603-452759325'pad=0,hg19_refFlat_SYT13:range=chr11:45265603-452759325'pad=0 3'pad=0 strand=- repeatMasking=none,-92.80chr11:45265736-45286134"	NA	inner
CUST_8857_PI429285431	3.21743	P	3.7567933	P	0.68807450779929	0	lncRNA	10396-1_{1..777}	lnc-GPR55-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR55-1:9	chr2	231860443	231861219	-	lnc-GPR55-1	lnc-GPR55-1:9	ENSG00000238062	XLOC_002517	SPATA3	NA	chr2:231860839-231870723	inter
CUST_34897_PI429285431	5.637149	P	5.755406	P	0.921300052270669	0	lncRNA	36322-1_{1..2235}	n341813|AK095845|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4292|NULL|-1.0925300|-0.1788302	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341813|AK095845|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4292|NULL|-1.0925300|-0.1788302	chr9	140477240	140479474	+	NA	NA	NA	NA	WDR85	"hg19_refFlat_ZMYND19:range=chr9:140476995-1404847155'pad=0,hg19_refFlat_ZMYND19:range=chr9:140476995-1404847155'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr9:140467240-140473387"	NA	inner
CUST_6049_PI429285431	0.962178	A	1.0629429	A	0.932538439495757	0	lncRNA	5975-1_{1..864}	"transcript_id ""ENST00000578787.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578787.1"" | genecode_v17"	chr18	  3284143	  3285006	+	ENSG00000266578.1	ENST00000578787.1	RP11-838N2.5	RP11-838N2.5-001	MYL12B	NA	chr18:3274143-3278282	inter
CUST_43109_PI429285431	0.93291026	A	0.919201	A	1.00954782735212	0	lncRNA	47817-1_{1..62}	ENST00000516105 ncrna:snRNA chromosome:GRCh37:1:21167734:21167795:1 gene:ENSG00000251914 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516105 ncrna:snRNA chromosome:GRCh37:1:21167734:21167795:1 gene:ENSG00000251914 gene_biotype:snRNA transcript_biotype:snRNA	chr1	 21167734	 21167795	+	ENSG00000251914	ENST00000516105	NA	NA	EIF4G3	NA	chr1:21157734-21177795	inner
CUST_26470_PI429285431	0.9067219	A	0.9021062	A	1.00320448285415	0	lncRNA	27978-1_{1..474}	lnc-ASAP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ASAP1-3:1	chr8	131904903	131905376	-	lnc-ASAP1-3	lnc-ASAP1-3:1	ENSG00000253259.1	RP11-737F9.2	ADCY8	NA	chr8:131894903-131915031	inner
CUST_30304_PI429285431	0.9278183	A	0.9709954	A	0.970515325522644	0	lncRNA	32080-1_{1..727}	n335208|AY526356|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255152|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255152|3.6558900|-0.1209938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335208|AY526356|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255152|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255152|3.6558900|-0.1209938	chr17	 44068841	 44069567	+	NA	NA	NA	NA	MAPT	NA	chr17:44058841-44105700	inner
CUST_41669_PI429285431	5.9962406	P	6.039117	P	0.970717630490504	0	lncRNA	43100-1_{1..64}	ENST00000583469 ncrna:miRNA chromosome:GRCh37:1:17740127:17740190:-1 gene:ENSG00000266727 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583469 ncrna:miRNA chromosome:GRCh37:1:17740127:17740190:-1 gene:ENSG00000266727 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 17740127	 17740190	-	ENSG00000266727	ENST00000583469	NA	NA	RCC2	NA	chr1:17733251-17750190	inner
CUST_15735_PI429285431	1.5306512	A	2.545387	A	0.494918954162452	0	lncRNA	17420-1_{1..217}	lnc-CALB2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CALB2-1:2	chr16	 71362472	 71362688	+	lnc-CALB2-1	lnc-CALB2-1:2	XLOC_011774	linc-CALB2-1	NA	NA	NA	inter
CUST_44131_PI429285431	2.9363935	A	3.4303727	P	0.710063916516992	0	lncRNA	48794-1_{1..983}	"gi|63025197|ref|NR_002311.1| Homo sapiens VENT homeobox pseudogene 7 (VENTXP7), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|63025197|ref|NR_002311.1| Homo sapiens VENT homeobox pseudogene 7 (VENTXP7), non-coding RNA"	Chr3	 21447218	 21448200	+	391518	NR_002311.1	NA	NA	NA	NA	NA	inter
CUST_34719_PI429285431	1.065965	A	0.9102185	A	1.11399788992111	0	lncRNA	36166-1_{1..1805}	n341626|BC041936|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4097|NULL|-1.0528700|-0.1841280	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341626|BC041936|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4097|NULL|-1.0528700|-0.1841280	chr8	143171187	143172991	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45055_PI429285431	0.90761966	A	0.8978735	A	1.00677839334363	0	lncRNA	49547-1_{1..3000}	"gi|187608276|ref|NR_023315.1| Homo sapiens ankyrin repeat, SAM and basic leucine zipper domain containing 1 (ASZ1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|187608276|ref|NR_023315.1| Homo sapiens ankyrin repeat, SAM and basic leucine zipper domain containing 1 (ASZ1), transcript variant 2, non-coding RNA"	Chr7	117003369	117006368	-	136991	NR_023315.1	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70"	NA	inter
CUST_44272_PI429285431	0.9137012	A	0.9074175	A	1.00436502804085	0	lncRNA	48911-1_{1..2550}	"gi|378744209|ref|NR_046380.1| Homo sapiens clarin 1 (CLRN1), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378744209|ref|NR_046380.1| Homo sapiens clarin 1 (CLRN1), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NR_046380.1	NA	NA	NA	NA	NA	Unknown
CUST_32926_PI429285431	1.6185213	A	0.89832366	A	1.64740770340359	0	lncRNA	34549-1_{1..3000}	n339597|AK126952|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2041|NULL|-1.0170800|-0.2367368	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339597|AK126952|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2041|NULL|-1.0170800|-0.2367368	chr20	 21479898	 21482897	-	NA	NA	NA	NA	NKX2-2	NA	chr20:21469898-21493572	inter
CUST_42615_PI429285431	12.923489	P	12.70579	P	1.16287739663451	0	lncRNA	45477-1_{1..85}	ENST00000362761 ncrna:snoRNA chromosome:GRCh37:19:49993872:49993956:1 gene:ENSG00000199631 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362761 ncrna:snoRNA chromosome:GRCh37:19:49993872:49993956:1 gene:ENSG00000199631 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	 49993872	 49993956	+	ENSG00000199631	ENST00000362761	NA	NA	FLT3LG	NA	chr19:49983872-49989488	inter
CUST_17611_PI429285431	3.3262475	P	3.778798	P	0.730749833282905	0	lncRNA	19334-1_{1..1957}	lnc-C12orf68-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C12orf68-1:2	chr12	 48637284	 48639240	+	lnc-C12orf68-1	lnc-C12orf68-1:2	XLOC_009734	linc-H1FNT	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-25.60"	NA	inter
CUST_44458_PI429285431	1.0055166	A	0.9296518	A	1.05399264532388	0	lncRNA	49062-1_{1..631}	"gi|310119467|ref|XR_109804.1| PREDICTED: Homo sapiens uncharacterized LOC100506107 (LOC100506107), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310119467|ref|XR_109804.1| PREDICTED: Homo sapiens uncharacterized LOC100506107 (LOC100506107), misc_RNA"	Chr4	171663746	171664376	-	100506107	XR_109804.2	NA	NA	NA	NA	NA	inter
CUST_41222_PI429285431	0.89912456	A	0.893093	A	1.00418951037229	0	lncRNA	42117-1_{1..96}	ENST00000385228 ncrna:miRNA chromosome:GRCh37:3:170824453:170824548:-1 gene:ENSG00000207963 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385228 ncrna:miRNA chromosome:GRCh37:3:170824453:170824548:-1 gene:ENSG00000207963 gene_biotype:miRNA transcript_biotype:miRNA	chr3	170824453	170824548	-	ENSG00000207963	ENST00000385228	NA	NA	TNIK	NA	chr3:170814453-170834548	inner
CUST_37378_PI429285431	6.096277	P	6.3481536	P	0.839803321913587	0	lncRNA	38482-1_{1..3000}	n345827|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1376|NULL|-1.2616000|-0.3142962	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345827|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1376|NULL|-1.2616000|-0.3142962	chr13	 55613911	 55616910	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_626_PI429285431	1.5420275	A	1.5684638	A	0.981842621401863	0	lncRNA	618-1_{1..889}	"transcript_id ""ENST00000587796.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587796.1"" | genecode_v17"	chr2	   306225	   307113	-	ENSG00000235779.2	ENST00000587796.1	AC079779.5	AC079779.5-015	NA	NA	NA	inter
CUST_6513_PI429285431	6.6256065	P	6.637932	P	0.991493005436656	0	lncRNA	6455-1_{1..2607}	"transcript_id ""ENST00000443870.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443870.1"" | genecode_v17"	chr19	 38320191	 38322797	+	ENSG00000229481.1	ENST00000443870.1	CTD-2554C21.3	CTD-2554C21.3-001	NA	NA	NA	inter
CUST_16842_PI429285431	0.9182871	A	0.90372187	A	1.01014698312213	0	lncRNA	18550-1_{1..613}	lnc-AC011366.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC011366.3.1-1:1	chr5	109247498	109248110	+	lnc-AC011366.3.1-1	lnc-AC011366.3.1-1:1	XLOC_004504	linc-SLC25A46	NA	NA	NA	inter
CUST_41229_PI429285431	0.9194996	A	0.91678995	A	1.00187995115438	0	lncRNA	42135-1_{1..77}	ENST00000583944 ncrna:miRNA chromosome:GRCh37:1:31212003:31212079:-1 gene:ENSG00000264773 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583944 ncrna:miRNA chromosome:GRCh37:1:31212003:31212079:-1 gene:ENSG00000264773 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 31212003	 31212079	-	ENSG00000264773	ENST00000583944	NA	NA	LAPTM5	NA	chr1:31205315-31222079	inner
CUST_43929_PI429285431	3.684928	P	3.8151627	P	0.913682798719162	0	lncRNA	48640-1_{1..828}	"gi|397138970|ref|XR_109876.2| PREDICTED: Homo sapiens uncharacterized LOC100506563 (LOC100506563), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138970|ref|XR_109876.2| PREDICTED: Homo sapiens uncharacterized LOC100506563 (LOC100506563), misc_RNA"	Chr2	110516376	110517203	-	100506563	XR_109876.2	NA	NA	NA	NA	NA	inter
CUST_35161_PI429285431	1.4041948	A	0.90035206	A	1.41798546070607	0	lncRNA	36563-1_{1..1520}	n342135|CR603839|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4619|NULL|-1.1921000|-0.4436029	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342135|CR603839|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4619|NULL|-1.1921000|-0.4436029	chr6	135353365	135354884	-	NA	NA	NA	NA	HBS1L	NA	chr6:135343365-135364885	inner
LNCA_21_P0001738	0.9296415	A	2.1073344	A	0.442057854383172	0	lncRNA	TCONS_00002451	NA	NA	NA	NA	XLOC_000980	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000980), lincRNA [TCONS_00002451]"	chr1:118139621-118139562	hs|1p12	Agilent_HUMAN_G3V2	TCONS_00002451	TCONS_00002451	chr1	118139562	118139621	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9338_PI429285431	0.92529845	A	1.0681185	A	0.905746951451725	0	lncRNA	10844-1_{1..588}	lnc-C9orf123-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf123-2:1	chr9	  7925545	  7926132	-	lnc-C9orf123-2	lnc-C9orf123-2:1	XLOC_007642	linc-C9orf123-2	NA	NA	NA	inter
LNCA_21_P0012991	0.9288801	A	0.91149944	A	1.01212021716515	0	lncRNA	ENST00000503268	NA	NA	NA	NA	XLOC_l2_012074	NA	ENST00000503268	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012074), lincRNA [TCONS_l2_00023767]"	chr5:68256374-68128482	hs|5q13.1	Agilent_HUMAN_G3V2	ENST00000503268	ENST00000503268	chr5	 68128482	 68256374	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39671_PI429285431	0.9108417	A	1.752944	A	0.55783010460938	0	lncRNA	40611-1_{1..805}	n405300|NR_001435|lncRNA|Homosapiens||RefGeneNoncode|NR_001435||4.6849900|-0.1215192	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405300|NR_001435|lncRNA|Homosapiens||RefGeneNoncode|NR_001435||4.6849900|-0.1215192	chr6	 33080292	 33081096	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2525_PI429285431	3.2490072	P	3.788639	P	0.687946462155929	0	lncRNA	2513-1_{1..824}	"transcript_id ""ENST00000447315.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447315.1"" | genecode_v17"	chr6	 40326483	 40327306	-	ENSG00000226070.1	ENST00000447315.1	RP11-552E20.4	RP11-552E20.4-001	NA	NA	NA	inter
CUST_27525_PI429285431	2.451783	A	2.1763954	A	1.21031921455913	0	lncRNA	29101-1_{1..524}	n324710|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000321097|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000321097|-0.2629440|-0.3433801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324710|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000321097|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000321097|-0.2629440|-0.3433801	chr22	 20978097	 20978620	+	NA	NA	NA	NA	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_SMPD4:range=chr2:130910128-1309391745'pad=0,hg19_refFlat_SMPD4:range=chr2:130910128-1309391745'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50"	NA	inter
CUST_13943_PI429285431	4.822032	P	5.0946765	P	0.827800772501109	0	lncRNA	15590-1_{1..823}	lnc-CDC7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDC7-1:1	chr1	 91319785	 91320607	+	lnc-CDC7-1	lnc-CDC7-1:1	XLOC_000293	linc-CDC7	NA	NA	NA	inter
CUST_28524_PI429285431	1.0905771	A	1.0822289	A	1.00580330560437	0	lncRNA	30194-1_{1..479}	n325870|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050697|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050697|-0.9812310|-0.3459414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325870|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050697|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050697|-0.9812310|-0.3459414	chr10	121930731	121931209	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19022_PI429285431	4.443406	P	4.4922075	P	0.966739101272511	0	lncRNA	20712-1_{1..1133}	lnc-BHLHB9-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-BHLHB9-1:6	chrX	102160589	102161721	+	lnc-BHLHB9-1	lnc-BHLHB9-1:6	ENSG00000239407	LL0XNC01-237H1.2	NA	NA	NA	inter
CUST_11737_PI429285431	3.4470165	P	2.7596698	A	1.61031921120353	0	lncRNA	13317-2_{3001..3188}	lnc-TSC22D2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSC22D2-1:1	chr3	150185256	150185443	+	lnc-TSC22D2-1	lnc-TSC22D2-1:1	XLOC_002872	linc-EIF2A	TSC22D2	NA	chr3:150172256-150177631	inter
CUST_32072_PI429285431	0.91335917	A	0.89747345	A	1.01107198777554	0	lncRNA	33780-1_{1..2055}	n338633|BX648226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1046|NULL|-1.2188400|-0.2799315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338633|BX648226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1046|NULL|-1.2188400|-0.2799315	chr13	 32612374	 32614428	+	NA	NA	NA	NA	FRY	NA	chr13:32605437-32624415	inner
CUST_49073_PI429285431	6.381177	P	6.5323496	P	0.900518237919523	0	lncRNA	52898-1_{1..324}	hg19_lincRNAsTranscripts_TCONS_l2_00021030 range=chr4:3949773-3953111 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021030 range=chr4:3949773-3953111 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  3949773	  3950096	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39632_PI429285431	1.4461777	A	1.3054432	A	1.10246625689825	0	lncRNA	40571-1_{1..343}	n405208|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000041913||-1.0649100|-0.3995065	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405208|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000041913||-1.0649100|-0.3995065	chr6	114543972	114544314	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41250_PI429285431	2.151849	A	2.4760041	A	0.798766038790462	0	lncRNA	42198-1_{1..148}	ENST00000408121 ncrna:miRNA chromosome:GRCh37:7:97535284:97535431:1 gene:ENSG00000221048 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408121 ncrna:miRNA chromosome:GRCh37:7:97535284:97535431:1 gene:ENSG00000221048 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 97535284	 97535431	+	ENSG00000221048	ENST00000408121	NA	NA	NA	NA	NA	inter
CUST_5266_PI429285431	2.1419625	A	1.1455353	A	1.99505317538164	0	lncRNA	5206-1_{1..180}	"transcript_id ""ENST00000559698.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559698.1"" | genecode_v17"	chr15	 81702946	 81703125	+	ENSG00000259372.1	ENST00000559698.1	CTD-2240J17.1	CTD-2240J17.1-001	NA	NA	NA	inter
CUST_13722_PI429285431	0.92485833	A	0.9097051	A	1.01055877318676	0	lncRNA	15361-1_{1..3000}	lnc-ZNF227-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF227-1:1	chr19	 44700210	 44703209	+	lnc-ZNF227-1	lnc-ZNF227-1:1	XLOC_013093	linc-ZNF227	NA	NA	NA	inter
CUST_44377_PI429285431	0.9650143	A	1.3195456	A	0.782123696705807	0	lncRNA	48997-1_{1..1418}	"gi|300796025|ref|NR_034081.1| Homo sapiens uncharacterized LOC255130 (LOC255130), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300796025|ref|NR_034081.1| Homo sapiens uncharacterized LOC255130 (LOC255130), non-coding RNA"	Chr4	 57975928	 57977345	+	255130	NR_034081.1	NA	NA	NA	"hg19_refFlat_IGFBP7:range=chr4:57898581-579765175'pad=0,hg19_refFlat_IGFBP7:range=chr4:57898581-579765175'pad=0 3'pad=0 strand=- repeatMasking=none,-106.70;hg19_refFlat_IGFBP7:range=chr4:57897483-579765175'pad=0,hg19_refFlat_IGFBP7:range=chr4:57897483-579765175'pad=0 3'pad=0 strand=- repeatMasking=none,-106.70"	NA	inter
CUST_22311_PI429285431	0.9180604	A	1.2586365	A	0.789725893895841	0	lncRNA	23910-1_{1..2685}	lnc-SIX3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIX3-1:1	chr2	 45193557	 45196241	+	lnc-SIX3-1	lnc-SIX3-1:1	ENSG00000225156.2	AC012354.6	NA	NA	NA	inter
CUST_21565_PI429285431	6.948114	P	6.8192797	P	1.09340986724219	0	lncRNA	23181-1_{1..3000}	lnc-CCL27-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCL27-1:1	chr9	 34665975	 34668974	-	lnc-CCL27-1	lnc-CCL27-1:1	ENSG00000261215.1	RP11-195F19.30	IL11RA	NA	chr9:34655975-34661884	inter
CUST_3174_PI429285431	5.7561483	P	5.763906	P	0.994637203528638	0	lncRNA	3154-1_{1..798}	"transcript_id ""ENST00000523602.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523602.1"" | genecode_v17"	chr8	 73108569	 73109366	+	ENSG00000253317.1	ENST00000523602.1	RP11-142A23.1	RP11-142A23.1-001	NA	NA	NA	inter
CUST_22831_PI429285431	7.027769	P	6.7154512	P	1.24170098599466	0	lncRNA	24411-1_{1..499}	lnc-TMEM178-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM178-1:5	chr2	 39701668	 39702166	+	lnc-TMEM178-1	lnc-TMEM178-1:5	ENSG00000231312.2	AC007246.3	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10"	NA	inter
CUST_21529_PI429285431	0.91392094	A	1.0318184	A	0.921529681880673	0	lncRNA	23147-1_{1..513}	lnc-PSMD7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PSMD7-1:1	chr16	 74349044	 74349556	+	lnc-PSMD7-1	lnc-PSMD7-1:1	ENSG00000260884.1	AC009120.5	PSMD7	NA	chr16:74339044-74340186	inter
CUST_17129_PI429285431	5.7463145	P	5.9049115	P	0.895895893188886	0	lncRNA	18839-1_{1..949}	lnc-EIF5AL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF5AL1-1:1	chr10	 81213629	 81214577	+	lnc-EIF5AL1-1	lnc-EIF5AL1-1:1	XLOC_008527	linc-EIF5AL1-1	ZCCHC24	NA	chr10:81203629-81205383	inter
CUST_17320_PI429285431	0.90314794	A	0.8973772	A	1.00400798272651	0	lncRNA	19038-1_{1..432}	lnc-CSN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CSN2-1:1	chr4	 71012337	 71012768	-	lnc-CSN2-1	lnc-CSN2-1:1	XLOC_003975	linc-CSN2	C4orf40	NA	chr4:71019904-71022421	inter
CUST_28856_PI429285431	3.4755373	P	3.766088	P	0.817589911710539	0	lncRNA	30564-1_{1..634}	n326271|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099182|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099182|-0.1079110|-0.1025776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326271|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099182|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099182|-0.1079110|-0.1025776	chr1	201046712	201047345	+	NA	NA	NA	NA	CACNA1S	"hg19_refFlat_CACNA1S:range=chr1:201008959-2010814675'pad=0,hg19_refFlat_CACNA1S:range=chr1:201008959-2010814675'pad=0 3'pad=0 strand=- repeatMasking=none,-96.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr1:201036712-201057664"	NA	inner
CUST_36770_PI429285431	1.1408153	A	0.89320356	A	1.18724011144477	0	lncRNA	37942-1_{1..1437}	n345249|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_798|NULL|-1.3225800|-0.1249876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345249|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_798|NULL|-1.3225800|-0.1249876	chr14	 23981980	 23983416	+	NA	NA	NA	NA	ZFHX2	NA	chr14:23990064-23997373	inter
CUST_26452_PI429285431	0.9214454	A	0.91997045	A	1.00102288021947	0	lncRNA	27960-1_{1..252}	lnc-TMEM135-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM135-4:1	chr11	 87848945	 87849196	+	lnc-TMEM135-4	lnc-TMEM135-4:1	ENSG00000255241.1	RP11-164N3.3	RAB38	NA	chr11:87846415-87859003	inner
CUST_32407_PI429285431	0.90124834	A	1.1382791	A	0.848489810685912	0	lncRNA	34083-1_{1..2044}	n339000|BC013917|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1429|NULL|0.1648510|-0.3168153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339000|BC013917|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1429|NULL|0.1648510|-0.3168153	chr2	168393468	168395511	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50"	NA	inter
CUST_22709_PI429285431	0.92326623	A	0.92141163	A	1.0012863373842	0	lncRNA	24293-1_{1..448}	lnc-SLTM-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLTM-3:1	chr15	 59563110	 59563557	-	lnc-SLTM-3	lnc-SLTM-3:1	ENSG00000259771.1	RP11-429D19.1	MYO1E	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.11;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10chr15:59553110-59573361"	NA	inner
CUST_13648_PI429285431	1.845848	A	1.3593138	A	1.40107501381935	0	lncRNA	15286-1_{1..640}	lnc-IRF2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRF2-2:3	chr4	185303288	185303927	-	lnc-IRF2-2	lnc-IRF2-2:3	XLOC_004205	linc-ENPP6-2	IRF2	NA	chr4:185308876-185313530	inter
CUST_50314_PI429285431	0.9011465	A	0.92806077	A	0.981517387326681	0	lncRNA	54033-1_{1..969}	hg19_lincRNAsTranscripts_TCONS_l2_00029823 range=chr9:107032531-107049236 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029823 range=chr9:107032531-107049236 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	107032531	107033499	+	NA	NA	NA	NA	OR13F1	NA	chr9:107037603-107059236	inter
CUST_1350_PI429285431	0.91280746	A	1.4214389	A	0.702888891610909	0	lncRNA	1338-1_{1..429}	"transcript_id ""ENST00000485347.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000485347.1"" | genecode_v17"	chr3	 55200938	 55201366	-	ENSG00000239991.1	ENST00000485347.1	RP11-889D3.1	RP11-889D3.1-001	NA	NA	NA	inter
CUST_15580_PI429285431	0.8998796	A	0.893148	A	1.00467689224062	0	lncRNA	17265-1_{1..1353}	lnc-SLC25A26-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A26-1:3	chr3	 66027252	 66028604	+	lnc-SLC25A26-1	lnc-SLC25A26-1:3	XLOC_002690	linc-SLC25A26-1	MAGI1	NA	chr3:66017252-66024509	inter
CUST_27959_PI429285431	0.91991687	A	0.9043565	A	1.01084400114442	0	lncRNA	29563-1_{1..2434}	n325208|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329332|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329332|-1.2690600|-0.3926437	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325208|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329332|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329332|-1.2690600|-0.3926437	chr2	104729529	104731962	-	NA	NA	NA	NA	NA	"hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60"	NA	inter
CUST_50988_PI429285431	4.828487	P	5.1441107	P	0.803503548289283	0	lncRNA	54632-1_{1..540}	hg19_lincRNAsTranscripts_TCONS_l2_00005951 range=chr12:122501314-122506323 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005951 range=chr12:122501314-122506323 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	122501314	122501853	+	NA	NA	NA	NA	BCL7A	NA	chr12:122491314-122499950	inter
CUST_39981_PI429285431	4.6107435	P	4.7433352	P	0.912191290067624	0	lncRNA	40850-2_{3001..3681}	n407067|NR_024561|lncRNA|Homosapiens||RefGeneNoncode|NR_024561||1.9103700|-0.1019965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407067|NR_024561|lncRNA|Homosapiens||RefGeneNoncode|NR_024561||1.9103700|-0.1019965	chr19	 35566704	 35567384	-	NA	NA	NA	NA	HPN	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr19:35553704-35557477"	NA	inter
CUST_5518_PI429285431	10.324068	P	10.508412	P	0.880049147310302	0	lncRNA	5449-1_{1..1591}	"transcript_id ""ENST00000574180.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000574180.1"" | genecode_v17"	chr16	 46656773	 46658363	-	ENSG00000261512.2	ENST00000574180.1	RP11-46D6.1	RP11-46D6.1-002	SHCBP1	NA	chr16:46646773-46655311	inter
CUST_52080_PI429285431	4.1365657	P	3.4837475	P	1.57223644774568	0	lncRNA	55609-1_{1..2797}	hg19_lincRNAsTranscripts_TCONS_l2_00017545 range=chr22:17082244-17134747 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017545 range=chr22:17082244-17134747 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17082244	 17085040	+	NA	NA	NA	NA	CCT8L2	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70chr22:17072244-17073700"	NA	inter
CUST_22630_PI429285431	4.63343	P	4.514907	P	1.08562285618399	0	lncRNA	24216-1_{1..862}	lnc-ADA-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADA-1:3	chr20	 43367461	 43368322	-	lnc-ADA-1	lnc-ADA-1:3	ENSG00000244558.1	RP11-445H22.4	KCNK15	NA	chr20:43374488-43377537	inter
CUST_28531_PI429285431	2.1301916	A	2.5164175	A	0.765128570209107	0	lncRNA	30202-1_{1..411}	n325879|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050591|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050591|-1.0936200|-0.2480969	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325879|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050591|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050591|-1.0936200|-0.2480969	chr10	119991065	119991475	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33144_PI429285431	6.478228	P	5.193177	P	2.43690667171218	0	lncRNA	34740-1_{1..2666}	n339833|AK095780|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2280|NULL|-1.1530300|-0.3632428	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339833|AK095780|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2280|NULL|-1.1530300|-0.3632428	chr18	 33755223	 33757888	+	NA	NA	NA	NA	MOCOS	NA	chr18:33767480-33767890	inter
CUST_45003_PI429285431	0.92924976	A	1.2287862	A	0.812513427418741	0	lncRNA	49508-1_{1..3000}	"gi|215598858|ref|NR_024550.1| Homo sapiens cyclin D binding myb-like transcription factor 1 (DMTF1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|215598858|ref|NR_024550.1| Homo sapiens cyclin D binding myb-like transcription factor 1 (DMTF1), transcript variant 5, non-coding RNA"	Chr7	 86781677	 86784676	+	9988	NR_024550.1	NA	NA	NA	NA	NA	inter
CUST_41512_PI429285431	0.9199462	A	0.91418654	A	1.00400027190377	0	lncRNA	42740-1_{1..124}	ENST00000580846 ncrna:miRNA chromosome:GRCh37:6:72936410:72936533:-1 gene:ENSG00000264447 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580846 ncrna:miRNA chromosome:GRCh37:6:72936410:72936533:-1 gene:ENSG00000264447 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 72936410	 72936533	-	ENSG00000264447	ENST00000580846	NA	NA	RIMS1	NA	chr6:72926410-72946533	inner
CUST_25359_PI429285431	5.7849174	P	5.4216895	P	1.28630066203714	0	lncRNA	26889-1_{1..805}	lnc-MRPS6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MRPS6-2:2	chr21	 35697036	 35697840	+	lnc-MRPS6-2	lnc-MRPS6-2:2	ENSG00000214955.4	AP000318.2	NA	NA	NA	inter
CUST_45938_PI429285431	1.5848339	A	0.92918116	A	1.5753285412724	0	lncRNA	50241-1_{1..3000}	"gi|310121804|ref|XR_110537.1| PREDICTED: Homo sapiens chromosome 11 open reading frame 44 (C11orf44), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310121804|ref|XR_110537.1| PREDICTED: Homo sapiens chromosome 11 open reading frame 44 (C11orf44), misc_RNA"	NA	NA	NA	NA	NA	XR_110537.1	NA	NA	NA	NA	NA	Unknown
CUST_37326_PI429285431	1.0517806	A	0.90411603	A	1.10777475767677	0	lncRNA	38433-1_{1..646}	n345770|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1319|NULL|-1.3657300|-0.2105701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n345770|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1319|NULL|-1.3657300|-0.2105701	chr7	 37532151	 37532796	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00"	NA	inter
CUST_18364_PI429285431	7.7469807	P	7.4168634	P	1.25711558161274	0	lncRNA	20091-1_{1..621}	lnc-AC016251.1-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AC016251.1-7:2	chr15	 96014392	 96015012	-	lnc-AC016251.1-7	lnc-AC016251.1-7:2	ENSG00000258489	RP11-398J10.2	NA	NA	NA	inter
CUST_23157_PI429285431	0.9074761	A	1.2775244	A	0.7737565917338	0	lncRNA	24728-1_{1..456}	lnc-BOD1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BOD1-4:2	chr5	173513401	173513856	-	lnc-BOD1-4	lnc-BOD1-4:2	ENSG00000253447.1	RP11-619L12.4	HMP19	NA	chr5:173503401-173523545	inner
CUST_46052_PI429285431	2.2104352	A	1.2303431	A	1.97259133293998	0	lncRNA	50327-1_{1..1937}	"gi|405113063|ref|NR_073163.1| Homo sapiens activating transcription factor 7 (ATF7), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|405113063|ref|NR_073163.1| Homo sapiens activating transcription factor 7 (ATF7), transcript variant 6, non-coding RNA"	Chr12	 53901640	 53903576	-	11016	NR_073163.1	NA	NA	NA	NA	NA	inter
CUST_11461_PI429285431	1.274266	A	1.0170931	A	1.1951344273361	0	lncRNA	13026-1_{1..1025}	lnc-OXSM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OXSM-1:1	chr3	 26020169	 26021193	+	lnc-OXSM-1	lnc-OXSM-1:1	XLOC_002601	linc-LRRC3B	NA	NA	NA	inter
CUST_12813_PI429285431	3.8229256	P	3.4459465	P	1.29861978977952	0	lncRNA	14442-1_{1..435}	lnc-PDZRN4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDZRN4-1:3	chr12	 42159122	 42159556	+	lnc-PDZRN4-1	lnc-PDZRN4-1:3	XLOC_009714	linc-PPHLN1	NA	NA	NA	inter
CUST_16009_PI429285431	6.321201	P	6.459206	P	0.908774966869032	0	lncRNA	17705-1_{1..2867}	lnc-C5orf17-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf17-6:1	chr5	 25302327	 25305193	+	lnc-C5orf17-6	lnc-C5orf17-6:1	XLOC_004321	linc-CDH6-7	NA	NA	NA	inter
CUST_39821_PI429285431	2.0620332	A	0.9151993	A	2.21427422103383	0	lncRNA	40730-2_{3001..4231}	n406301|NR_003955|lncRNA|Homosapiens||RefGeneNoncode|NR_003955||4.7106900|-0.4417704	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406301|NR_003955|lncRNA|Homosapiens||RefGeneNoncode|NR_003955||4.7106900|-0.4417704	chr1	121263909	121265139	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50099_PI429285431	4.761316	P	5.412144	P	0.636914666941137	0	lncRNA	53831-1_{1..1549}	hg19_lincRNAsTranscripts_TCONS_l2_00029172 range=chr9:2496116-2621526 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029172 range=chr9:2496116-2621526 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	  2496116	  2497664	-	NA	NA	NA	NA	VLDLR	NA	chr9:2621793-2631526	inter
CUST_49677_PI429285431	0.916191	A	1.405442	A	0.712394853876433	0	lncRNA	53455-1_{1..1561}	hg19_lincRNAsTranscripts_TCONS_l2_00026962 range=chr7:149247722-149318653 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026962 range=chr7:149247722-149318653 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	149247722	149249282	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35356_PI429285431	7.532181	P	7.7879524	P	0.837539187964781	0	lncRNA	36766-1_{1..1614}	n342399|X80038|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4891|NULL|7.4597400|-0.0185498	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342399|X80038|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4891|NULL|7.4597400|-0.0185498	chr19	 45349782	 45351395	+	NA	NA	NA	NA	PVRL2	NA	chr19:45349393-45392485	inner
CUST_3460_PI429285431	0.8970745	A	1.5126274	A	0.652679711932416	0	lncRNA	3431-1_{1..599}	"transcript_id ""ENST00000422010.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422010.1"" | genecode_v17"	chr9	 85068260	 85068858	+	ENSG00000232749.1	ENST00000422010.1	RP11-15B24.4	RP11-15B24.4-001	NA	NA	NA	inter
CUST_44535_PI429285431	3.5492935	P	3.7893176	P	0.846731167729735	0	lncRNA	49128-3_{6001..6699}	"gi|374429566|ref|NR_046243.1| Homo sapiens uncharacterized LOC642366 (LOC642366), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|374429566|ref|NR_046243.1| Homo sapiens uncharacterized LOC642366 (LOC642366), non-coding RNA"	Chr5	 50674570	 50675268	-	642366	NR_046243.1	NA	NA	NA	NA	NA	inter
CUST_21791_PI429285431	1.1034019	A	0.8945402	A	1.15577590595938	0	lncRNA	23401-1_{1..588}	lnc-PCYOX1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PCYOX1L-1:1	chr5	148754272	148754859	+	lnc-PCYOX1L-1	lnc-PCYOX1L-1:1	ENSG00000253865.1	RP11-394O4.3	IL17B	NA	chr5:148753830-148758838	inner
CUST_24853_PI429285431	6.5020404	P	6.770672	P	0.830106530731054	0	lncRNA	26393-1_{1..532}	lnc-EXO1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EXO1-2:1	chr1	242373671	242374202	+	lnc-EXO1-2	lnc-EXO1-2:1	ENSG00000224525.1	RP11-561I11.2	PLD5	NA	chr1:242363671-242384129	inner
CUST_24240_PI429285431	2.1592	A	1.5170367	A	1.56066760377465	0	lncRNA	25791-1_{1..469}	lnc-TTC34-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTC34-4:1	chr1	  3050137	  3050605	-	lnc-TTC34-4	lnc-TTC34-4:1	ENSG00000226286.1	RP1-163G9.2	PRDM16	NA	chr1:3040137-3060273	inner
CUST_6404_PI429285431	1.066652	A	0.91850096	A	1.10814835711286	0	lncRNA	6340-1_{1..470}	"transcript_id ""ENST00000594576.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594576.1"" | genecode_v17"	chr19	 23586082	 23586551	-	ENSG00000269416.1	ENST00000594576.1	CTB-175P5.4	CTB-175P5.4-009	ZNF91	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00chr19:23576082-23578269"	NA	inter
CUST_45523_PI429285431	5.3093495	P	5.0629287	P	1.18626045305487	0	lncRNA	49931-1_{1..575}	"gi|374671829|ref|NR_046283.1| Homo sapiens uncharacterized LOC100128511 (LOC100128511), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374671829|ref|NR_046283.1| Homo sapiens uncharacterized LOC100128511 (LOC100128511), transcript variant 1, non-coding RNA"	Chr10	 21462919	 21463493	+	100128511	NR_046283.1	NA	NA	NA	NA	NA	inter
CUST_924_PI429285431	4.401436	P	4.807078	P	0.754900287028028	0	lncRNA	914-1_{1..750}	"transcript_id ""ENST00000593336.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593336.1"" | genecode_v17"	chr2	 67488198	 67488947	+	ENSG00000235885.3	ENST00000593336.1	AC023115.2	AC023115.2-004	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00"	NA	inter
CUST_153_PI429285431	2.522206	A	2.253447	A	1.20477104302411	0	lncRNA	144-1_{1..379}	"transcript_id ""ENST00000421469.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000421469.1"" | genecode_v17"	chr1	  6787587	  6787965	+	ENSG00000228750.1	ENST00000421469.1	RP11-242F24.1	RP11-242F24.1-003	NA	NA	NA	inter
CUST_4757_PI429285431	1.4476621	A	1.246275	A	1.14980331874047	0	lncRNA	4702-1_{1..776}	"transcript_id ""ENST00000548087.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548087.1"" | genecode_v17"	chr14	 29299453	 29300228	+	ENSG00000258038.1	ENST00000548087.1	CTD-2384A14.1	CTD-2384A14.1-003	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50"	NA	inter
CUST_41842_PI429285431	4.7755394	P	4.401547	P	1.29593413853984	0	lncRNA	43475-1_{1..109}	ENST00000516341 ncrna:miRNA chromosome:GRCh37:4:461317:461425:-1 gene:ENSG00000252150 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516341 ncrna:miRNA chromosome:GRCh37:4:461317:461425:-1 gene:ENSG00000252150 gene_biotype:miRNA transcript_biotype:miRNA	chr4	   461317	   461425	-	ENSG00000252150	ENST00000516341	NA	NA	ZNF721	NA	chr4:451317-471425	inner
CUST_43523_PI429285431	8.80513	P	8.192711	P	1.52882046958791	0	lncRNA	48308-1_{1..1759}	"gi|297747326|ref|NR_033716.1| Homo sapiens sorting nexin 7 (SNX7), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|297747326|ref|NR_033716.1| Homo sapiens sorting nexin 7 (SNX7), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_033716.1	NA	NA	NA	NA	NA	Unknown
CUST_2577_PI429285431	1.2560538	A	1.1307027	A	1.09077315525779	0	lncRNA	2565-1_{1..1431}	"transcript_id ""ENST00000569865.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569865.1"" | genecode_v17"	chr6	 91054938	 91056368	+	ENSG00000260271.1	ENST00000569865.1	RP1-45N11.1	RP1-45N11.1-001	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-21.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30"	NA	inter
CUST_31903_PI429285431	3.3435307	P	1.67205	A	3.18541358489934	0	lncRNA	33634-1_{1..1873}	n338458|BX248762|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|855|NULL|10.8097000|-0.0899828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338458|BX248762|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|855|NULL|10.8097000|-0.0899828	chr14	 93709202	 93711074	-	NA	NA	NA	NA	KIAA1409	NA	chr14:93799565-93809385	inner
CUST_46140_PI429285431	2.3531141	A	2.0817144	A	1.20697826785216	0	lncRNA	50392-1_{1..3000}	"gi|300068997|ref|NR_033954.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|300068997|ref|NR_033954.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NR_033954.1	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30"	NA	Unknown
CUST_35389_PI429285431	0.9280211	A	1.0110662	A	0.944062906397117	0	lncRNA	36797-1_{1..363}	n342442|Z36850|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4935|NULL|-1.3268600|-0.2926324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342442|Z36850|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4935|NULL|-1.3268600|-0.2926324	chr2	122524505	122524867	-	NA	NA	NA	NA	TSN	NA	chr2:122514505-122525429	inter
LNCA_21_P0011484	1.0317339	A	0.9826309	A	1.03462144481073	0	lncRNA	TCONS_l2_00010196	NA	NA	NA	NA	XLOC_l2_005503	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005503), lincRNA [TCONS_l2_00010196]"	chr16:56177559-56176583	hs|16q12.2	Agilent_HUMAN_G3V2	TCONS_l2_00010196	TCONS_l2_00010196	chr16	 56176583	 56177559	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00318154	4.106268	P	4.094616	P	1.00810925426955	0	lncRNA	XR_110033	XR_110033	XR_110033	NA	Hs.694643	LOC100293612	NA	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100293612 (LOC100293612), miscRNA [XR_110033]"	chr3:13689919-13689860	hs|3p25.1	Agilent_HUMAN_G3V2	XR_110033	XR_110033	chr3	 13689860	 13689919	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17788_PI429285431	1.3033726	A	0.9885913	A	1.2438230862621	0	lncRNA	19520-1_{1..221}	lnc-PITRM1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PITRM1-6:1	chr10	  2620198	  2620418	-	lnc-PITRM1-6	lnc-PITRM1-6:1	XLOC_008689	linc-ADARB2-6	NA	NA	NA	inter
CUST_29125_PI429285431	1.1129112	A	0.9121876	A	1.14927464214669	0	lncRNA	30863-1_{1..488}	n326628|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021894|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021894|-0.9417710|-0.2254282	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326628|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021894|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021894|-0.9417710|-0.2254282	chr1	 46996533	 46997020	+	NA	NA	NA	NA	KNCN	NA	chr1:47011316-47015887	inter
CUST_21991_PI429285431	3.705913	P	2.8385558	A	1.82431796197535	0	lncRNA	23599-1_{1..292}	lnc-GK-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GK-2:1	chrX	 30872588	 30872879	+	lnc-GK-2	lnc-GK-2:1	ENSG00000235512.1	TAB3-AS2	TAB3	"hg19_refFlat_TAB3:range=chrX:30849544-308777055'pad=0,hg19_refFlat_TAB3:range=chrX:30849544-308777055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80chrX:30862588-30882824"	NA	inner
CUST_11323_PI429285431	2.506595	A	3.0173807	A	0.701840107617817	0	lncRNA	12886-1_{1..217}	lnc-PHYHIPL-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHYHIPL-2:6	chr10	 60782329	 60782545	+	lnc-PHYHIPL-2	lnc-PHYHIPL-2:6	XLOC_008489	linc-PHYHIPL	NA	NA	NA	inter
CUST_39108_PI429285431	0.9630146	A	0.9310456	A	1.0224065613489	0	lncRNA	40084-1_{1..1693}	n385660|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bac.1||-1.1447900|-0.1981827	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385660|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bac.1||-1.1447900|-0.1981827	chr9	102131163	102132855	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30635_PI429285431	6.728175	P	5.9588647	P	1.70445475094067	0	lncRNA	32417-1_{1..265}	n335996|X75682|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323534|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323534|-1.2553100|-0.3002848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335996|X75682|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323534|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323534|-1.2553100|-0.3002848	chr19	 51363766	 51364030	+	NA	NA	NA	NA	KLK3	NA	chr19:51358171-51364020	inner
LNCA_21_P0005660	1.0380703	A	0.9787631	A	1.04196527607002	0	lncRNA	THC2736788	NA	NA	NA	NA	XLOC_006723	NA	NA	THC2736788	NA	"BROAD Institute lincRNA (XLOC_006723), lincRNA [TCONS_00014628]"	NA	NA	Agilent_HUMAN_G3V2	THC2736788	THC2736788	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1654_PI429285431	0.94255733	A	0.9400039	A	1.00177147000769	0	lncRNA	1639-1_{1..718}	"transcript_id ""ENST00000599566.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599566.1"" | genecode_v17"	chr3	195435025	195435742	+	ENSG00000242086.3	ENST00000599566.1	AC069513.3	AC069513.3-024	MUC20	NA	chr3:195447753-195462058	inner
LNCA_21_P0012592	2.601	A	3.6194563	P	0.493644274708226	0	lncRNA	TCONS_l2_00020580	NA	NA	NA	NA	XLOC_l2_010717	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010717), lincRNA [TCONS_l2_00020580]"	chr4:75828238-75828297	hs|4q13.3	Agilent_HUMAN_G3V2	TCONS_l2_00020580	TCONS_l2_00020580	chr4	 75828238	 75828297	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17642_PI429285431	4.7827153	P	4.6278124	P	1.11334668236359	0	lncRNA	19371-1_{1..481}	lnc-BFSP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BFSP1-1:1	chr20	 17206423	 17206903	-	lnc-BFSP1-1	lnc-BFSP1-1:1	XLOC_013664	linc-KIF16B-4	PCSK2	NA	chr20:17206752-17216710	inter
CUST_11413_PI429285431	1.6782854	A	1.776965	A	0.933887323652132	0	lncRNA	12979-1_{1..583}	lnc-LVRN.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LVRN.1-1:1	chr5	115296816	115297398	+	lnc-LVRN.1-1	lnc-LVRN.1-1:1	XLOC_004517	linc-AQPEP	AQPEP	NA	chr5:115298151-115307015	inter
CUST_38493_PI429285431	0.92897516	A	0.9233721	A	1.00389129675294	0	lncRNA	39509-1_{1..3000}	n383026|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fkg.2||2.2495400|-0.1421932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383026|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fkg.2||2.2495400|-0.1421932	chr16	 87731748	 87734747	-	NA	NA	NA	NA	JPH3	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60chr16:87721748-87731762"	NA	inner
CUST_21632_PI429285431	5.839992	P	5.5136504	P	1.25382986597413	0	lncRNA	23244-1_{1..674}	lnc-PTPN9-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPN9-1:4	chr15	 75893479	 75894152	-	lnc-PTPN9-1	lnc-PTPN9-1:4	ENSG00000260269.1	CTD-2323K18.1	SNUPN	NA	chr15:75890424-75903525	inner
CUST_11481_PI429285431	4.422555	P	4.539452	P	0.922168953039891	0	lncRNA	13049-1_{1..428}	lnc-OR10AB1P-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR10AB1P-1:1	chr11	  7750613	  7751040	+	lnc-OR10AB1P-1	lnc-OR10AB1P-1:1	XLOC_009049	linc-EIF3F-1	NA	NA	NA	inter
CUST_52089_PI429285431	0.90021706	A	0.89965737	A	1.00038802280687	0	lncRNA	55614-2_{3001..4935}	hg19_lincRNAsTranscripts_TCONS_l2_00017552 range=chr22:17082750-17134747 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017552 range=chr22:17082750-17134747 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17085750	 17087684	+	NA	NA	NA	NA	CCT8L2	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SLC25A15:range=chr13:41367363-413838035'pad=0,hg19_refFlat_SLC25A15:range=chr13:41367363-413838035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50chr22:17072750-17073700"	NA	inter
CUST_7870_PI429285431	3.2405279	A	2.760693	A	1.39458406297112	0	lncRNA	9492-1_{1..736}	lnc-C8orf56-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C8orf56-1:2	chr8	104310577	104311312	-	lnc-C8orf56-1	lnc-C8orf56-1:2	ENSG00000247081	RP11-318M2.2	FZD6	NA	chr8:104310661-104320991	inner
CUST_30579_PI429285431	3.2874944	A	2.6346784	A	1.57223405020674	0	lncRNA	32361-1_{1..214}	n335827|X57416|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322088|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322088|-1.3919200|-0.3348983	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335827|X57416|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322088|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322088|-1.3919200|-0.3348983	chr2	 89037309	 89037522	+	NA	NA	NA	NA	RPIA	NA	chr2:89027309-89047523	inner
CUST_48522_PI429285431	1.439642	A	2.0461175	A	0.656799302439517	0	lncRNA	52374-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00013506 range=chr2:21350513-21367638 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013506 range=chr2:21350513-21367638 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 21350513	 21353512	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006647	0.94742984	A	0.9258095	A	1.01509893201943	0	lncRNA	ENST00000418270	NA	NA	NA	NA	XLOC_008381	NA	ENST00000418270	NA	NA	"BROAD Institute lincRNA (XLOC_008381), lincRNA [TCONS_00017782]"	chr10:8094988-8095047	hs|10p14	Agilent_HUMAN_G3V2	ENST00000418270	ENST00000418270	chr10	  8094988	  8095047	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10478_PI429285431	7.6068296	P	7.743178	P	0.909819083084429	0	lncRNA	12005-1_{1..1606}	lnc-C15orf2-8:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-C15orf2-8:3	chr15	 24571319	 24572924	+	lnc-C15orf2-8	lnc-C15orf2-8:3	XLOC_011176	linc-C15orf2-6	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90"	NA	inter
LNCA_21_P0009226	0.95502114	A	0.9262711	A	1.02012789752607	0	lncRNA	TCONS_00025320	NA	NA	NA	NA	XLOC_012126	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012126), lincRNA [TCONS_00025320]"	chr17:16886505-16886564	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_00025320	TCONS_00025320	chr17	 16886505	 16886564	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15841_PI429285431	0.9241251	A	0.929913	A	0.995996170219214	0	lncRNA	17532-1_{1..967}	lnc-PPIAL4G-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-PPIAL4G-7:1	chr1	142956514	142957480	-	lnc-PPIAL4G-7	lnc-PPIAL4G-7:1	XLOC_000995	linc-FCGR1B-10	NA	NA	NA	inter
CUST_35619_PI429285431	5.7078347	P	5.672418	P	1.02485279306004	0	lncRNA	37034-1_{1..1260}	n342760|BC033226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5263|NULL|-1.0506000|-0.2724499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342760|BC033226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5263|NULL|-1.0506000|-0.2724499	chr11	 33724566	 33725825	-	NA	NA	NA	NA	CD59	NA	chr11:33724556-33735791	inner
CUST_24606_PI429285431	1.2379783	A	1.2772009	A	0.973179206313728	0	lncRNA	26155-1_{1..429}	lnc-GTF2IRD2B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTF2IRD2B-2:2	chr7	 74855978	 74856406	+	lnc-GTF2IRD2B-2	lnc-GTF2IRD2B-2:2	ENSG00000224804.4	AC004878.2	GATSL2	NA	chr7:74845978-74866154	inner
CUST_3184_PI429285431	0.93073267	A	0.9160481	A	1.0102305461231	0	lncRNA	3164-1_{1..738}	"transcript_id ""ENST00000520696.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520696.1"" | genecode_v17"	chr8	 75803386	 75804123	-	ENSG00000254043.1	ENST00000520696.1	RP11-3N13.2	RP11-3N13.2-001	NA	NA	NA	inter
CUST_32633_PI429285431	0.96173453	A	0.96538144	A	0.997475346926432	0	lncRNA	34292-1_{1..2309}	n339257|AK027155|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1689|NULL|-0.8307890|-0.2082379	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339257|AK027155|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1689|NULL|-0.8307890|-0.2082379	chr3	 14389950	 14392258	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35082_PI429285431	0.9404253	A	0.92111367	A	1.01347579281788	0	lncRNA	36491-1_{1..1654}	n342044|AK055027|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4525|NULL|-1.1431800|-0.3537592	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342044|AK055027|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4525|NULL|-1.1431800|-0.3537592	chr6	 80283593	 80285246	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9987_PI429285431	4.7160363	P	4.916561	P	0.870234006564504	0	lncRNA	11512-1_{1..1443}	lnc-SUCLA2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUCLA2-4:1	chr13	 48466673	 48468115	-	lnc-SUCLA2-4	lnc-SUCLA2-4:1	XLOC_010601	linc-HTR2A-1	NA	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10"	NA	inter
CUST_12432_PI429285431	0.9232336	A	0.9075831	A	1.0109071539336	0	lncRNA	14045-1_{1..992}	lnc-CRIPAK-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRIPAK-1:5	chr4	  1550026	  1551017	+	lnc-CRIPAK-1	lnc-CRIPAK-1:5	XLOC_003422	linc-TACC3	NA	NA	NA	inter
LNCA_21_P0007667	3.7507772	P	4.448515	P	0.616538204170651	0	lncRNA	TCONS_00020646	NA	NA	NA	NA	XLOC_009945	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009945), lincRNA [TCONS_00020646]"	chr12:127836830-127836889	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020646	TCONS_00020646	chr12	127836830	127836889	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33274_PI429285431	0.9270363	A	0.91333836	A	1.00953990604079	0	lncRNA	34859-1_{1..404}	n339981|AF086456|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2434|NULL|-1.3521700|-0.4170062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339981|AF086456|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2434|NULL|-1.3521700|-0.4170062	chr10	 16865964	 16866367	-	NA	NA	NA	NA	RSU1	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10chr10:16855964-16859453"	NA	inner
CUST_9159_PI429285431	0.9278946	A	0.91332334	A	1.01015120521956	0	lncRNA	10678-1_{1..3000}	lnc-ECHDC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ECHDC1-1:1	chr6	127440482	127443481	-	lnc-ECHDC1-1	lnc-ECHDC1-1:1	ENSG00000248650	AL356534.1	RSPO3	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chr6:127440048-127450994"	NA	inner
CUST_14028_PI429285431	0.91835696	A	1.0159185	A	0.934611348293997	0	lncRNA	15676-1_{1..3000}	lnc-C16orf78-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C16orf78-2:2	chr16	 49490685	 49493684	+	lnc-C16orf78-2	lnc-C16orf78-2:2	XLOC_011715	linc-TMEM188	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	inter
CUST_6546_PI429285431	1.3335398	A	0.96722835	A	1.2890528820742	0	lncRNA	6494-1_{1..482}	"transcript_id ""ENST00000556021.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556021.1"" | genecode_v17"	chr19	 48366873	 48367354	-	ENSG00000259108.2	ENST00000556021.1	CTD-3098H1.2	CTD-3098H1.2-001	SULT2A1	NA	chr19:48373723-48378598	inter
CUST_13309_PI429285431	0.92792946	A	1.3659786	A	0.738132060710769	0	lncRNA	14944-1_{1..266}	lnc-KCTD6-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCTD6-1:7	chr3	 58470299	 58470564	+	lnc-KCTD6-1	lnc-KCTD6-1:7	XLOC_002675	linc-KCTD6	KCTD6	NA	chr3:58477823-58480480	inter
CUST_729_PI429285431	0.9243494	A	0.9112253	A	1.00913843576067	0	lncRNA	722-1_{1..746}	"transcript_id ""ENST00000456681.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456681.1"" | genecode_v17"	chr2	  8064285	  8065030	-	ENSG00000235665.1	ENST00000456681.1	AC007464.1	AC007464.1-002	NA	NA	NA	inter
CUST_48923_PI429285431	10.798726	P	10.461109	P	1.26366758130011	0	lncRNA	52766-1_{1..569}	hg19_lincRNAsTranscripts_TCONS_l2_00018862 range=chr3:130546600-130547267 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018862 range=chr3:130546600-130547267 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	130546600	130547168	+	NA	NA	NA	NA	ATP2C1	NA	chr3:130546482-130557267	inter
CUST_30154_PI429285431	2.5825307	A	3.149751	A	0.674915924812025	0	lncRNA	31928-1_{1..443}	n334827|AJ277909|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246408|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246408|3.7367000|-0.0829346	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334827|AJ277909|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246408|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246408|3.7367000|-0.0829346	chr7	142571264	142571706	-	NA	NA	NA	NA	EPHB6	NA	chr7:142561264-142568847	inner
CUST_25490_PI429285431	1.253613	A	1.354385	A	0.93253385016368	0	lncRNA	27020-1_{1..494}	lnc-MRPS22-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPS22-1:7	chr3	139301971	139302464	+	lnc-MRPS22-1	lnc-MRPS22-1:7	ENSG00000248932.1	RP11-319G6.1	NMNAT3	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_DTWD1:range=chr15:49917365-499357755'pad=0,hg19_refFlat_DTWD1:range=chr15:49917365-499357755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr3:139291971-139312096"	NA	inner
CUST_15890_PI429285431	2.2357085	A	2.807489	A	0.672785958036307	0	lncRNA	17581-1_{1..441}	lnc-KCNG3-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNG3-1:5	chr2	 42640839	 42641279	-	lnc-KCNG3-1	lnc-KCNG3-1:5	XLOC_002064	linc-COX7A2L-1	NA	NA	NA	inter
CUST_48762_PI429285431	4.718719	P	4.70695	P	1.00819101345098	0	lncRNA	52600-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00014965 range=chr2:162359313-162364091 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014965 range=chr2:162359313-162364091 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	162359313	162362312	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17440_PI429285431	7.570385	P	7.879902	P	0.806911860098876	0	lncRNA	19164-1_{1..487}	lnc-TMEM70-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM70-1:3	chr8	 74796868	 74797354	+	lnc-TMEM70-1	lnc-TMEM70-1:3	XLOC_006844	linc-TMEM70-2	UBE2W	NA	chr8:74786868-74791110	inter
CUST_12701_PI429285431	1.617295	A	1.2691412	A	1.27293063013192	0	lncRNA	14318-1_{1..372}	lnc-IL12RB2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL12RB2-2:1	chr1	 67997789	 67998160	+	lnc-IL12RB2-2	lnc-IL12RB2-2:1	XLOC_000236	linc-GADD45A	NA	NA	NA	inter
CUST_16053_PI429285431	2.0149982	A	2.380712	A	0.776084797715969	0	lncRNA	17753-1_{1..234}	lnc-CDC25A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDC25A-1:1	chr3	 48256868	 48257101	-	lnc-CDC25A-1	lnc-CDC25A-1:1	XLOC_003114	linc-CDC25A	CAMP	NA	chr3:48264862-48266907	inter
CUST_41107_PI429285431	0.91531456	A	0.9052687	A	1.00698755939631	0	lncRNA	41852-1_{1..71}	ENST00000385092 ncrna:miRNA chromosome:GRCh37:6:72113254:72113324:-1 gene:ENSG00000207827 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385092 ncrna:miRNA chromosome:GRCh37:6:72113254:72113324:-1 gene:ENSG00000207827 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 72113254	 72113324	-	ENSG00000207827	ENST00000385092	NA	NA	NA	NA	NA	inter
CUST_12717_PI429285431	0.9249963	A	0.92518616	A	0.999868407735321	0	lncRNA	14336-1_{1..1745}	lnc-CHRAC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHRAC1-2:1	chr8	141648130	141649874	+	lnc-CHRAC1-2	lnc-CHRAC1-2:1	XLOC_006942	linc-DENND3-3	EIF2C2	NA	chr8:141638130-141645646	inter
CUST_17537_PI429285431	8.628714	P	9.102302	P	0.720171293990911	0	lncRNA	19262-1_{1..565}	lnc-RNF187-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF187-1:1	chr1	228697592	228698156	+	lnc-RNF187-1	lnc-RNF187-1:1	XLOC_000600	linc-RHOU	BUTR1	NA	chr1:228696347-228699658	inter
CUST_28574_PI429285431	3.2737958	P	3.2993946	P	0.982412757080803	0	lncRNA	30254-1_{1..598}	n325933|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049090|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049090|-1.0922800|-0.2727195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325933|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049090|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049090|-1.0922800|-0.2727195	chr10	 82279332	 82279929	-	NA	NA	NA	NA	TSPAN14	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.24;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50chr10:82269332-82282391"	NA	inner
CUST_49919_PI429285431	4.613473	P	4.9020042	P	0.818735184238	0	lncRNA	53669-1_{1..659}	hg19_lincRNAsTranscripts_TCONS_l2_00026780 range=chr7:97598065-97599440 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026780 range=chr7:97598065-97599440 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 97598065	 97598723	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38346_PI429285431	1.7981154	A	1.2654595	A	1.44658981577016	0	lncRNA	39391-2_{3001..6000}	n382094|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vnl.2||-1.0184300|-0.3283965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382094|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vnl.2||-1.0184300|-0.3283965	chr13	 99056669	 99059668	+	NA	NA	NA	NA	FARP1	NA	chr13:99043669-99069746	inner
CUST_4770_PI429285431	0.9212858	A	0.9089927	A	1.00855733404104	0	lncRNA	4716-1_{1..583}	"transcript_id ""ENST00000546508.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546508.1"" | genecode_v17"	chr14	 36539633	 36540215	+	ENSG00000257585.1	ENST00000546508.1	LINC00609	LINC00609-001	NA	NA	NA	inter
CUST_30509_PI429285431	8.994262	P	7.2322326	P	3.3917489766768	0	lncRNA	32289-1_{1..589}	n335665|CR613639|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000292834|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000292834|-1.3092100|-0.4153926	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335665|CR613639|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000292834|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000292834|-1.3092100|-0.4153926	chr12	 50569571	 50570159	-	NA	NA	NA	NA	LIMA1	NA	chr12:50569563-50580160	inner
CUST_32779_PI429285431	0.9129728	A	0.9027647	A	1.00710080775688	0	lncRNA	34413-1_{1..1554}	n339418|BC042081|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1850|NULL|-1.1806100|-0.3270689	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339418|BC042081|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1850|NULL|-1.1806100|-0.3270689	chr3	110607662	110609215	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48069_PI429285431	0.9022088	A	0.89297986	A	1.00641751833236	0	lncRNA	51945-1_{1..1334}	"gi|341914493|ref|XR_133343.1| PREDICTED: Homo sapiens HHSL751 (LOC100508226), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341914493|ref|XR_133343.1| PREDICTED: Homo sapiens HHSL751 (LOC100508226), misc_RNA"	NA	NA	NA	NA	NA	XR_133343.1	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30"	NA	Unknown
CUST_43209_PI429285431	3.5375175	P	2.8981154	A	1.55768347056768	0	lncRNA	48023-1_{1..552}	ENST00000602827 havana:sense_intronic chromosome:GRCh37:14:104153913:104154464:1 gene:ENSG00000270108 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602827 havana:sense_intronic chromosome:GRCh37:14:104153913:104154464:1 gene:ENSG00000270108 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr14	104153913	104154464	+	ENSG00000270108	ENST00000602827	NA	NA	KLC1	NA	chr14:104143913-104164464	inner
CUST_1978_PI429285431	0.9287141	A	0.9092339	A	1.01359421811972	0	lncRNA	1969-1_{1..777}	"transcript_id ""ENST00000502956.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502956.1"" | genecode_v17"	chr4	174817545	174818321	-	ENSG00000250043.1	ENST00000502956.1	RP11-161D15.2	RP11-161D15.2-001	NA	NA	NA	inter
CUST_25929_PI429285431	2.3567762	A	2.0528686	A	1.23448353964183	0	lncRNA	27448-1_{1..405}	lnc-OR2F1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR2F1-1:2	chr7	143694234	143694638	+	lnc-OR2F1-1	lnc-OR2F1-1:2	ENSG00000243583.1	RP4-669B10.3	OR6B1	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90chr7:143701090-143702025"	NA	inter
CUST_21030_PI429285431	1.110379	A	1.4402313	A	0.795617933229868	0	lncRNA	22658-1_{1..755}	lnc-IQSEC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-IQSEC2-1:1	chrX	 53243439	 53244193	-	lnc-IQSEC2-1	lnc-IQSEC2-1:1	ENSG00000235262.1	KDM5C-IT1	KDM5C	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10chrX:53233439-53253861"	NA	inner
CUST_39451_PI429285431	2.349218	A	3.3047833	P	0.515639503888203	0	lncRNA	40395-1_{1..561}	n386938|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010uuh.1||2.4666300|-0.0240798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386938|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010uuh.1||2.4666300|-0.0240798	chr16	   576846	   577406	-	NA	NA	NA	NA	RAB11FIP3	NA	chr16:566846-572481	inter
LNCA_21_P0012828	3.7978942	P	4.0876193	P	0.818057921503314	0	lncRNA	TCONS_l2_00022305	NA	NA	NA	NA	XLOC_l2_011579	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011579), lincRNA [TCONS_l2_00022305]"	chr5:50265780-50265839	hs|5q11.1	Agilent_HUMAN_G3V2	TCONS_l2_00022305	TCONS_l2_00022305	chr5	 50265780	 50265839	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009939	0.92430246	A	0.9077924	A	1.0115096334851	0	lncRNA	TCONS_00028113	NA	NA	NA	NA	XLOC_013467	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013467), lincRNA [TCONS_00028113]"	chr20:16619618-16619677	hs|20p12.1	Agilent_HUMAN_G3V2	TCONS_00028113	TCONS_00028113	chr20	 16619618	 16619677	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25708_PI429285431	0.9111522	A	0.8960266	A	1.01053941949749	0	lncRNA	27236-1_{1..553}	lnc-GAP43-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GAP43-4:1	chr3	116088678	116089230	+	lnc-GAP43-4	lnc-GAP43-4:1	ENSG00000240922.1	LSAMP-AS1	LSAMP	NA	chr3:116078678-116098937	inner
CUST_52026_PI429285431	1.6689062	A	1.9016861	A	0.850993548621313	0	lncRNA	55556-1_{1..2320}	hg19_lincRNAsTranscripts_TCONS_l2_00017153 range=chr21:16741247-16767613 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017153 range=chr21:16741247-16767613 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 16741247	 16743566	-	NA	NA	NA	NA	LOC100652984	NA	chr21:16742841-16767376	inter
LNCA_21_P0002316	0.9236869	A	0.9074821	A	1.0112956306934	0	lncRNA	TCONS_00003937	NA	NA	NA	NA	XLOC_001752	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001752), lincRNA [TCONS_00003937]"	chr2:172345143-172345202	hs|2q31.1	Agilent_HUMAN_G3V2	TCONS_00003937	TCONS_00003937	chr2	172345143	172345202	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19194_PI429285431	10.352544	P	10.133687	P	1.16381117166703	0	lncRNA	20864-1_{1..138}	lnc-KIAA1755-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-KIAA1755-4:1	chr20	 37055949	 37056086	-	lnc-KIAA1755-4	lnc-KIAA1755-4:1	ENSG00000225091.1	SNORA71A	NA	NA	NA	inter
CUST_49950_PI429285431	4.801687	P	4.285978	P	1.42969657914147	0	lncRNA	53700-1_{1..702}	hg19_lincRNAsTranscripts_TCONS_l2_00026202 range=chr7:128220066-128259236 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026202 range=chr7:128220066-128259236 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	128220066	128220767	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7850_PI429285431	11.779572	P	10.845902	P	1.91012890263791	0	lncRNA	9474-1_{1..641}	lnc-SYNCRIP-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SYNCRIP-2:7	chr6	 86387854	 86388494	-	lnc-SYNCRIP-2	lnc-SYNCRIP-2:7	ENSG00000203875	SNHG5	NA	NA	NA	inter
CUST_20932_PI429285431	1.0314901	A	0.9148166	A	1.08423200576037	0	lncRNA	22563-1_{1..557}	lnc-COL6A2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COL6A2-4:1	chr21	 47608408	 47608964	+	lnc-COL6A2-4	lnc-COL6A2-4:1	ENSG00000228404.1	AP001468.58	LSS	NA	chr21:47608360-47618855	inner
CUST_29001_PI429285431	0.90910584	A	0.89689666	A	1.00849866906509	0	lncRNA	30725-1_{1..450}	n326485|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000032186|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000032186|-0.8297780|-0.3791257	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326485|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000032186|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000032186|-0.8297780|-0.3791257	chr1	110228320	110228769	-	NA	NA	NA	NA	GSTM1	NA	chr1:110230418-110236367	inter
CUST_4369_PI429285431	2.4069397	A	1.9934136	A	1.3319372352209	0	lncRNA	4323-1_{1..521}	"transcript_id ""ENST00000549470.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549470.1"" | genecode_v17"	chr12	 90687095	 90687615	+	ENSG00000258183.1	ENST00000549470.1	RP11-753N8.1	RP11-753N8.1-001	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-61.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50"	NA	inter
CUST_41472_PI429285431	4.341135	P	4.715618	P	0.771381793316081	0	lncRNA	42666-1_{1..96}	ENST00000384851 ncrna:miRNA chromosome:GRCh37:10:77312216:77312311:1 gene:ENSG00000207583 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384851 ncrna:miRNA chromosome:GRCh37:10:77312216:77312311:1 gene:ENSG00000207583 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 77312216	 77312311	+	ENSG00000207583	ENST00000384851	NA	NA	NA	NA	NA	inter
CUST_36127_PI429285431	3.9140503	P	3.9999056	P	0.94222577290034	0	lncRNA	37415-1_{1..884}	n344701|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_250|NULL|-1.5053000|-0.1489117	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344701|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_250|NULL|-1.5053000|-0.1489117	chr2	 47559373	 47560256	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011268	1.9366803	A	1.9465289	A	0.993196718498109	0	lncRNA	TCONS_l2_00008034	NA	NA	NA	NA	XLOC_l2_004381	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004381), lincRNA [TCONS_l2_00008034]"	chr14:39304800-39304741	hs|14q21.1	Agilent_HUMAN_G3V2	TCONS_l2_00008034	TCONS_l2_00008034	chr14	 39304741	 39304800	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14465_PI429285431	1.5294108	A	1.0610435	A	1.38354282443798	0	lncRNA	16128-1_{1..358}	lnc-CHMP2B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHMP2B-1:2	chr3	 87203488	 87203845	+	lnc-CHMP2B-1	lnc-CHMP2B-1:2	XLOC_002726	linc-CHMP2B-1	NA	NA	NA	inter
CUST_23266_PI429285431	0.9107634	A	1.1338847	A	0.856709920638531	0	lncRNA	24838-1_{1..3000}	lnc-HADH-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HADH-1:5	chr4	109094575	109097574	+	lnc-HADH-1	lnc-HADH-1:5	ENSG00000232021.2	LEF1-AS1	LEF1	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr4:109084575-109090112"	NA	inter
CUST_24644_PI429285431	1.0112547	A	0.91066897	A	1.07220868779599	0	lncRNA	26193-1_{1..422}	lnc-CTTN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CTTN-1:1	chr11	 70167371	 70167792	+	lnc-CTTN-1	lnc-CTTN-1:1	ENSG00000254484.1	CTA-797E19.1	PPFIA1	NA	chr11:70157371-70177521	inner
CUST_32837_PI429285431	2.4520762	A	1.996379	A	1.37144541260706	0	lncRNA	34471-1_{1..347}	n339491|AJ001868|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1931|NULL|-1.3050300|-0.1610293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339491|AJ001868|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1931|NULL|-1.3050300|-0.1610293	chr21	 38740665	 38741011	-	NA	NA	NA	NA	DYRK1A	NA	chr21:38739859-38751012	inner
LNCA_21_P0006159	0.92271435	A	0.90852636	A	1.00988288154826	0	lncRNA	ENST00000417801	NA	NA	NA	NA	XLOC_007419	NA	ENST00000417801	NA	NA	"BROAD Institute lincRNA (XLOC_007419), lincRNA [TCONS_00015698]"	chr9:82649385-82649444	hs|9q21.31	Agilent_HUMAN_G3V2	ENST00000417801	ENST00000417801	chr9	 82649385	 82649444	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44828_PI429285431	2.7585003	A	1.722588	A	2.05040982960968	0	lncRNA	49358-2_{3001..6000}	"gi|395394050|ref|NR_073033.1| Homo sapiens LATS, large tumor suppressor, homolog 1 (Drosophila) (LATS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|395394050|ref|NR_073033.1| Homo sapiens LATS, large tumor suppressor, homolog 1 (Drosophila) (LATS1), transcript variant 3, non-coding RNA"	Chr6	149982289	149985288	-	9113	NR_073033.1	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_49759_PI429285431	0.93097496	A	0.9248358	A	1.00426440826666	0	lncRNA	53525-4_{9001..12000}	hg19_lincRNAsTranscripts_TCONS_l2_00025849 range=chr7:45831388-45863181 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025849 range=chr7:45831388-45863181 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 45840388	 45843387	+	NA	NA	NA	NA	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-60.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_24840_PI429285431	6.3838453	P	6.7001276	P	0.803136827221093	0	lncRNA	26380-1_{1..556}	lnc-KDELR3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KDELR3-1:1	chr22	 38823082	 38823637	+	lnc-KDELR3-1	lnc-KDELR3-1:1	ENSG00000228620.1	RP3-434P1.6	KCNJ4	"hg19_refFlat_KCNJ4:range=chr22:38822800-388241375'pad=0,hg19_refFlat_KCNJ4:range=chr22:38822800-388241375'pad=0 3'pad=0 strand=- repeatMasking=none,-102.30;hg19_refFlat_KCNJ18:range=chr17:21318655-213199565'pad=0,hg19_refFlat_KCNJ18:range=chr17:21318655-213199565'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.90;hg19_refFlat_KCNJ12:range=chr17:21318655-213199565'pad=0,hg19_refFlat_KCNJ12:range=chr17:21318655-213199565'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.90chr22:38822332-38833341"	NA	inner
CUST_45242_PI429285431	3.368573	P	3.8165402	P	0.733075045033086	0	lncRNA	49696-1_{1..522}	"gi|374349255|ref|NR_046232.1| Homo sapiens uncharacterized LOC619344 (C8orf69), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|374349255|ref|NR_046232.1| Homo sapiens uncharacterized LOC619344 (C8orf69), non-coding RNA"	Chr8	 96219235	 96219756	-	619344	NR_046232.1	NA	NA	NA	NA	NA	inter
CUST_24296_PI429285431	0.9049161	A	0.8937262	A	1.00778640524398	0	lncRNA	25847-1_{1..600}	lnc-ISCU-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ISCU-1:1	chr12	109034650	109035249	+	lnc-ISCU-1	lnc-ISCU-1:1	ENSG00000257221.1	RP11-689B22.2	CORO1C	NA	chr12:109038885-109045094	inter
CUST_15503_PI429285431	1.0480802	A	0.9176738	A	1.09460200176175	0	lncRNA	17193-1_{1..239}	lnc-DPY30-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DPY30-3:1	chr2	 31990312	 31990550	-	lnc-DPY30-3	lnc-DPY30-3:1	XLOC_002042	linc-SRD5A2-2	NA	NA	NA	inter
CUST_17603_PI429285431	1.4088788	A	1.1268218	A	1.21592732278003	0	lncRNA	19329-1_{1..993}	lnc-CAMK2N1-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CAMK2N1-2:7	chr1	 20724976	 20725968	-	lnc-CAMK2N1-2	lnc-CAMK2N1-2:7	XLOC_000730	linc-PLA2G2C-1	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00"	NA	inter
CUST_28977_PI429285431	1.0986469	A	1.5241382	A	0.744585124973367	0	lncRNA	30698-1_{1..391}	n326458|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000034530|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000034530|-1.0658500|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326458|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000034530|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000034530|-1.0658500|-1.0000000	chr1	119672397	119672787	+	NA	NA	NA	NA	WARS2	NA	chr1:119662397-119683295	inner
CUST_40098_PI429285431	12.274343	P	12.183467	P	1.06501666101075	0	lncRNA	40943-1_{1..1905}	n407509|NR_026972_2|lncRNA|Homosapiens||RefGeneNoncode|NR_026972_2||-0.7698070|-0.2071356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407509|NR_026972_2|lncRNA|Homosapiens||RefGeneNoncode|NR_026972_2||-0.7698070|-0.2071356	chr6	   995238	   997142	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51691_PI429285431	4.4890766	P	5.3314238	P	0.557735420012642	0	lncRNA	55253-1_{1..2165}	hg19_lincRNAsTranscripts_TCONS_l2_00011008 range=chr17:77799351-77801616 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011008 range=chr17:77799351-77801616 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 77799351	 77801515	+	NA	NA	NA	NA	CBX4	NA	chr17:77806955-77811616	inter
CUST_3391_PI429285431	5.1466513	P	3.3697278	A	3.42694609783741	0	lncRNA	3364-1_{1..636}	"transcript_id ""ENST00000593237.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593237.1"" | genecode_v17"	chr9	 37079905	 37080540	+	ENSG00000233137.2	ENST00000593237.1	RP11-220I1.1	RP11-220I1.1-005	NA	NA	NA	inter
CUST_45429_PI429285431	0.9034627	A	1.5742264	A	0.628174071203595	0	lncRNA	49848-1_{1..3000}	"gi|225703124|ref|NR_027406.1| Homo sapiens uncharacterized LOC100129034 (LOC100129034), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225703124|ref|NR_027406.1| Homo sapiens uncharacterized LOC100129034 (LOC100129034), non-coding RNA"	Chr9	127115752	127118751	+	100129034	NR_027406.1	NA	NA	NA	"hg19_refFlat_PSMB7:range=chr9:127115877-1271777045'pad=0,hg19_refFlat_PSMB7:range=chr9:127115877-1271777045'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40"	NA	inter
LNCA_21_P0011065	6.975553	P	7.0068555	P	0.978536452276173	0	lncRNA	TCONS_l2_00005906	NA	NA	NA	NA	XLOC_l2_003156	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003156), lincRNA [TCONS_l2_00005906]"	chr12:115026428-115026487	hs|12q24.21	Agilent_HUMAN_G3V2	TCONS_l2_00005906	TCONS_l2_00005906	chr12	115026428	115026487	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7423_PI429285431	0.9377625	A	0.94692326	A	0.99367036212622	0	lncRNA	9066-1_{1..1673}	lnc-JAM3-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-JAM3-3:4	chr11	133907407	133909079	+	lnc-JAM3-3	lnc-JAM3-3:4	ENSG00000204241	RP11-713P17.3	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70"	NA	inter
CUST_39049_PI429285431	3.0400407	A	1.0892181	A	3.86594898528287	0	lncRNA	40027-1_{1..2410}	n385480|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zlo.1||0.4386880|-0.3850783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385480|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zlo.1||0.4386880|-0.3850783	chr9	 15163621	 15166030	-	NA	NA	NA	NA	TTC39B	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80chr9:15170842-15176031"	NA	inter
LNCA_21_P0001313	0.92901653	A	1.6510941	A	0.606223813560058	0	lncRNA	TCONS_00000967	NA	NA	NA	NA	XLOC_000226	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000226), lincRNA [TCONS_00000967]"	chr1:60881771-60881830	hs|1p32.1	Agilent_HUMAN_G3V2	TCONS_00000967	TCONS_00000967	chr1	 60881771	 60881830	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25089_PI429285431	1.8162246	A	1.5067027	A	1.23929693672419	0	lncRNA	26626-1_{1..809}	lnc-SPATA9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPATA9-1:1	chr5	 95067645	 95068453	-	lnc-SPATA9-1	lnc-SPATA9-1:1	ENSG00000250240.1	CTD-2154I11.2	RHOBTB3	"hg19_refFlat_RHOBTB3:range=chr5:95067387-951288785'pad=0,hg19_refFlat_RHOBTB3:range=chr5:95067387-951288785'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.10chr5:95066850-95077999"	NA	inner
LNCA_21_P0008857	5.9598546	P	5.5367413	P	1.34081788666849	0	lncRNA	TCONS_00024175	NA	NA	NA	NA	XLOC_011535	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011535), lincRNA [TCONS_00024175]"	chr15:77657555-77649433	hs|15q24.3	Agilent_HUMAN_G3V2	TCONS_00024175	TCONS_00024175	chr15	 77649433	 77657555	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30590_PI429285431	0.9288661	A	0.9313988	A	0.998246006184036	0	lncRNA	32372-1_{1..347}	n335878|X61076|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322440|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322440|-0.8899300|-0.2630528	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335878|X61076|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322440|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322440|-0.8899300|-0.2630528	chr14	 22320547	 22320893	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31321_PI429285431	0.9259636	A	0.9281007	A	0.998519771780515	0	lncRNA	33104-1_{1..2246}	n337787|AX747251|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|169|NULL|0.5014150|-0.2869793	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337787|AX747251|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|169|NULL|0.5014150|-0.2869793	chr15	 58727092	 58729337	-	NA	NA	NA	NA	LIPC	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80chr15:58724175-58800934"	NA	inner
CUST_33990_PI429285431	0.9186201	A	0.9254867	A	0.995251744348016	0	lncRNA	35527-1_{1..2106}	n340803|AK093082|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3266|NULL|-0.8228480|-0.2102158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340803|AK093082|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3266|NULL|-0.8228480|-0.2102158	chr6	  2771261	  2773366	-	NA	NA	NA	NA	WRNIP1	NA	chr6:2765666-2785979	inner
CUST_4949_PI429285431	7.580657	P	7.574341	P	1.00438751467361	0	lncRNA	4893-1_{1..426}	"transcript_id ""ENST00000555413.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555413.1"" | genecode_v17"	chr14	 90918407	 90918832	-	ENSG00000258678.1	ENST00000555413.1	RP11-1078H9.1	RP11-1078H9.1-001	NA	NA	NA	inter
CUST_18192_PI429285431	1.176605	A	1.1219248	A	1.03862884651269	0	lncRNA	19927-1_{1..805}	lnc-TMEM75-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM75-2:9	chr8	129427612	129428416	-	lnc-TMEM75-2	lnc-TMEM75-2:9	ENSG00000254275	RP11-234A3.1	NA	NA	NA	inter
CUST_2578_PI429285431	6.0749707	P	6.299408	P	0.855928801850901	0	lncRNA	2566-1_{1..442}	"transcript_id ""ENST00000434493.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434493.1"" | genecode_v17"	chr6	 92100031	 92100472	-	ENSG00000224605.1	ENST00000434493.1	RP1-177I10.1	RP1-177I10.1-001	NA	NA	NA	inter
CUST_17105_PI429285431	0.9311919	A	0.9434864	A	0.991514310433571	0	lncRNA	18814-1_{1..509}	lnc-TGFBRAP1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGFBRAP1-6:1	chr2	105469568	105470076	-	lnc-TGFBRAP1-6	lnc-TGFBRAP1-6:1	XLOC_002241	linc-MFSD9-15	POU3F3	NA	chr2:105471969-105473471	inter
CUST_7475_PI429285431	3.49632	P	3.5022607	P	0.995890686973321	0	lncRNA	9117-1_{1..1861}	lnc-KCNH3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KCNH3-1:2	chr12	 49997960	 49999820	+	lnc-KCNH3-1	lnc-KCNH3-1:2	ENSG00000250952	ENST00000508736	FAM186B	"hg19_refFlat_FAM186B:range=chr12:49981388-499992605'pad=0,hg19_refFlat_FAM186B:range=chr12:49981388-499992605'pad=0 3'pad=0 strand=- repeatMasking=none,-99.10chr12:49987960-49999433"	NA	inner
CUST_42798_PI429285431	1.1151536	A	0.90302974	A	1.1583922536188	0	lncRNA	45790-1_{1..125}	ENST00000516381 ncrna:snoRNA chromosome:GRCh37:1:26332497:26332621:1 gene:ENSG00000252190 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516381 ncrna:snoRNA chromosome:GRCh37:1:26332497:26332621:1 gene:ENSG00000252190 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 26332497	 26332621	+	ENSG00000252190	ENST00000516381	NA	NA	PAFAH2	NA	chr1:26322497-26324648	inter
CUST_23275_PI429285431	6.181115	P	6.507598	P	0.797478207312239	0	lncRNA	24846-1_{1..888}	lnc-CAGE1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CAGE1-1:1	chr6	  7540684	  7541571	-	lnc-CAGE1-1	lnc-CAGE1-1:1	ENSG00000261189.1	RP3-512B11.3	DSP	NA	chr6:7541870-7551571	inter
CUST_21721_PI429285431	5.792535	P	5.6410627	P	1.11070238854847	0	lncRNA	23331-1_{1..526}	lnc-DAPP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DAPP1-3:1	chr4	101136437	101136962	+	lnc-DAPP1-3	lnc-DAPP1-3:1	ENSG00000249710.1	RP11-588P8.1	NA	NA	NA	inter
CUST_10717_PI429285431	4.8672423	P	4.7313066	P	1.09880524343497	0	lncRNA	12253-1_{1..1336}	lnc-RASA1-3:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASA1-3:14	chr5	 87583253	 87584588	+	lnc-RASA1-3	lnc-RASA1-3:14	XLOC_004457	linc-POLR3G-10	NA	NA	NA	inter
LNCA_21_P0007129	7.699321	P	6.406967	P	2.4492736994073	0	lncRNA	AK055250	NA	AK055250	NA	Hs.191599	XLOC_009255	NA	NA	THC2604613	NA	"BROAD Institute lincRNA (XLOC_009255), lincRNA [TCONS_00019107]"	chr11:94892196-94892255	hs|11q21	Agilent_HUMAN_G3V2	AK055250	AK055250	chr11	 94892196	 94892255	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8261_PI429285431	0.9389614	A	1.1190195	A	0.882667448922727	0	lncRNA	9850-1_{1..3000}	lnc-DUSP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DUSP1-3:1	chr5	172298175	172301174	-	lnc-DUSP1-3	lnc-DUSP1-3:1	ENSG00000248606	ENST00000514700	ERGIC1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20chr5:172288175-172309818"	NA	inner
CUST_21398_PI429285431	2.4763992	A	2.7114093	A	0.849679050696181	0	lncRNA	23019-1_{1..367}	lnc-TDRD3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-TDRD3-2:1	chr13	 60727530	 60727896	+	lnc-TDRD3-2	lnc-TDRD3-2:1	ENSG00000223815.1	DIAPH3-AS2	DIAPH3	NA	chr13:60717530-60737639	inner
CUST_3275_PI429285431	1.8747115	A	2.1557708	A	0.822986516851998	0	lncRNA	3253-1_{1..555}	"transcript_id ""ENST00000523110.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523110.1"" | genecode_v17"	chr8	117414781	117415335	-	ENSG00000253672.1	ENST00000523110.1	RP11-536K17.1	RP11-536K17.1-001	NA	NA	NA	inter
CUST_16763_PI429285431	0.92780066	A	0.9296754	A	0.998701373201225	0	lncRNA	18471-1_{1..597}	lnc-PCDH20-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH20-9:2	chr13	 64303522	 64304118	-	lnc-PCDH20-9	lnc-PCDH20-9:2	XLOC_010643	linc-PCDH20-8	NA	NA	NA	inter
CUST_1908_PI429285431	1.1326218	A	1.1011208	A	1.02207495372791	0	lncRNA	1899-1_{1..258}	"transcript_id ""ENST00000506420.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506420.1"" | genecode_v17"	chr4	138728860	138729117	+	ENSG00000250034.1	ENST00000506420.1	RP11-793B23.1	RP11-793B23.1-001	NA	NA	NA	inter
CUST_35636_PI429285431	10.145871	P	8.643908	P	2.83227823762765	0	lncRNA	37052-1_{1..1908}	n342782|BC032472|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5285|NULL|3.4238200|-0.2702516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n342782|BC032472|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5285|NULL|3.4238200|-0.2702516	chr11	104772275	104774182	-	NA	NA	NA	NA	CASP12	NA	chr11:104762275-104769397	inter
CUST_14935_PI429285431	8.67953	P	8.505774	P	1.12799134650168	0	lncRNA	16598-1_{1..901}	lnc-HOXB7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOXB7-1:1	chr17	 46723967	 46724867	-	lnc-HOXB7-1	lnc-HOXB7-1:1	XLOC_012505	linc-HOXB9	NA	NA	NA	inter
CUST_29772_PI429285431	8.722972	P	8.5092945	P	1.15964039955442	0	lncRNA	31535-1_{1..220}	n333469|BC022869|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090698|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090698|1.1199100|-0.1660637	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333469|BC022869|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090698|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090698|1.1199100|-0.1660637	chr5	 60241055	 60241274	+	NA	NA	NA	NA	NDUFAF2	NA	chr5:60240956-60379018	inner
CUST_2281_PI429285431	0.91436577	A	0.91012645	A	1.00294279424829	0	lncRNA	2273-1_{1..722}	"transcript_id ""ENST00000505527.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505527.1"" | genecode_v17"	chr5	101944964	101945685	-	ENSG00000250682.1	ENST00000505527.1	LINC00491	LINC00491-001	NA	NA	NA	inter
CUST_47614_PI429285431	0.92656595	A	0.9342358	A	0.994697771795866	0	lncRNA	51610-2_{3001..6000}	"gi|371877753|ref|NR_028407.2| Homo sapiens armadillo repeat containing, X-linked 4 (ARMCX4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|371877753|ref|NR_028407.2| Homo sapiens armadillo repeat containing, X-linked 4 (ARMCX4), transcript variant 2, non-coding RNA"	NW_004070883.1	   102939	   105938	+	100131755	NR_028407.2	NA	NA	NA	"hg19_refFlat_PPIAL4D:range=chr1:148201967-1482024615'pad=0,hg19_refFlat_PPIAL4D:range=chr1:148201967-1482024615'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_PPIAL4F:range=chr1:148201967-1482024615'pad=0,hg19_refFlat_PPIAL4F:range=chr1:148201967-1482024615'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_PPIAL4D:range=chr1:148806090-1488065845'pad=0,hg19_refFlat_PPIAL4D:range=chr1:148806090-1488065845'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_PPIAL4E:range=chr1:148644086-1486445805'pad=0,hg19_refFlat_PPIAL4E:range=chr1:148644086-1486445805'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_PPIAL4F:range=chr1:148806090-1488065845'pad=0,hg19_refFlat_PPIAL4F:range=chr1:148806090-1488065845'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20"	NA	Unknown
CUST_45912_PI429285431	7.1538014	P	7.347588	P	0.874307936384978	0	lncRNA	50222-1_{1..2081}	"gi|410170631|ref|XR_110528.3| PREDICTED: Homo sapiens uncharacterized LOC729173 (LOC729173), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170631|ref|XR_110528.3| PREDICTED: Homo sapiens uncharacterized LOC729173 (LOC729173), misc_RNA"	Chr11	120039685	120041765	+	729173	XR_110528.3	NA	NA	NA	"hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-63.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70"	NA	inter
CUST_29332_PI429285431	0.91234034	A	0.9040034	A	1.0057954555039	0	lncRNA	31083-1_{1..438}	n332571|AM851115|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000434856_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000434856_03|-1.3894000|-0.3724672	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332571|AM851115|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000434856_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000434856_03|-1.3894000|-0.3724672	chr6	  2435148	  2435585	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13598_PI429285431	3.6698606	P	3.4392164	P	1.17335876678303	0	lncRNA	15237-1_{1..687}	lnc-KATNAL1-3:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KATNAL1-3:16	chr13	 30938206	 30938892	-	lnc-KATNAL1-3	lnc-KATNAL1-3:16	XLOC_010556	linc-KATNAL1-3	NA	NA	NA	inter
CUST_15895_PI429285431	0.9294794	A	1.4171441	A	0.713178590862929	0	lncRNA	17587-1_{1..2497}	lnc-PAEP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-PAEP-1:1	chr9	138476895	138479391	+	lnc-PAEP-1	lnc-PAEP-1:1	XLOC_007609	linc-LCN9	GLT6D1	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50chr9:138479852-138488958"	NA	inter
CUST_45674_PI429285431	15.284182	P	14.849505	P	1.35160819227011	0	lncRNA	50049-1_{1..1957}	"gi|402534575|ref|NR_073110.1| Homo sapiens pleckstrin and Sec7 domain containing (PSD), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402534575|ref|NR_073110.1| Homo sapiens pleckstrin and Sec7 domain containing (PSD), transcript variant 4, non-coding RNA"	Chr10	104162374	104164330	-	5662	NR_073110.1	NA	NA	NA	NA	NA	inter
CUST_18072_PI429285431	3.6625242	P	3.7807186	P	0.921340029280993	0	lncRNA	19807-1_{1..221}	lnc-ERI1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERI1-3:1	chr8	  8784501	  8784721	+	lnc-ERI1-3	lnc-ERI1-3:1	XLOC_006699	linc-ERI1-3	NA	NA	NA	inter
CUST_20510_PI429285431	0.9152704	A	0.90923864	A	1.00418964958253	0	lncRNA	22152-1_{1..509}	lnc-C15orf53-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C15orf53-1:2	chr15	 38969988	 38970496	+	lnc-C15orf53-1	lnc-C15orf53-1:2	ENSG00000259747.1	RP11-275I4.2	NA	NA	NA	inter
CUST_38813_PI429285431	4.381093	P	4.9663954	P	0.666509618349833	0	lncRNA	39807-1_{1..3000}	n384580|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jcp.3||-0.0763138|-0.2590239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384580|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jcp.3||-0.0763138|-0.2590239	chr5	  1597673	  1600672	-	NA	NA	NA	NA	NA	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CCDC127:range=chr5:205412-2169645'pad=0,hg19_refFlat_CCDC127:range=chr5:205412-2169645'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00"	NA	inter
CUST_42655_PI429285431	1.649925	A	1.935559	A	0.820381008789938	0	lncRNA	45549-1_{1..72}	ENST00000517137 ncrna:snoRNA chromosome:GRCh37:1:204873875:204873946:-1 gene:ENSG00000252946 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517137 ncrna:snoRNA chromosome:GRCh37:1:204873875:204873946:-1 gene:ENSG00000252946 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	204873875	204873946	-	ENSG00000252946	ENST00000517137	NA	NA	NFASC	NA	chr1:204863875-204883946	inner
CUST_46208_PI429285431	0.95432144	A	0.91890234	A	1.02485449795863	0	lncRNA	50450-1_{1..2091}	"gi|337756382|ref|NR_039974.1| Homo sapiens VWA8 antisense RNA 1 (head to head) (VWA8-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|337756382|ref|NR_039974.1| Homo sapiens VWA8 antisense RNA 1 (head to head) (VWA8-AS1), non-coding RNA"	Chr13	 42535305	 42537395	+	100507240	NR_039974.1	NA	NA	NA	NA	NA	inter
CUST_15072_PI429285431	1.6790626	A	0.92735416	A	1.68378558987848	0	lncRNA	16736-1_{1..350}	lnc-ACTR2-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACTR2-3:10	chr2	 66015812	 66016161	+	lnc-ACTR2-3	lnc-ACTR2-3:10	XLOC_001504	linc-MEIS1-4	NA	NA	NA	inter
CUST_47117_PI429285431	0.99603117	A	1.7817771	A	0.580051969995124	0	lncRNA	51199-1_{1..2788}	"gi|333470710|ref|NR_038247.1| Homo sapiens uncharacterized LOC100507433 (LOC100507433), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333470710|ref|NR_038247.1| Homo sapiens uncharacterized LOC100507433 (LOC100507433), transcript variant 1, non-coding RNA"	Chr19	 38039851	 38042638	+	100507433	NR_038247.1	NA	NA	NA	"hg19_refFlat_ZNF571:range=chr19:38055500-380775775'pad=0,hg19_refFlat_ZNF571:range=chr19:38055500-380775775'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80"	NA	inter
LNCA_21_P0002341	1.0381886	A	0.97537005	A	1.04450438566091	0	lncRNA	TCONS_00004000	NA	NA	NA	NA	XLOC_001823	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001823), lincRNA [TCONS_00004000]"	chr2:207798073-207798132	hs|2q33.3	Agilent_HUMAN_G3V2	TCONS_00004000	TCONS_00004000	chr2	207798073	207798132	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014440	10.530211	P	11.387861	P	0.5518507336056	0	lncRNA	XR_109822	XR_109822	XR_109822	NA	Hs.657203	LOC100507031	uncharacterized LOC100507031	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507031 (LOC100507031), miscRNA [XR_109822]"	chr4:96010785-96010726	hs|4q22.3	Agilent_HUMAN_G3V2	XR_109822	XR_109822	chr4	 96010726	 96010785	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51052_PI429285431	0.9148121	A	0.91628593	A	0.99897894052721	0	lncRNA	54694-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00006731 range=chr13:23474438-23493355 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006731 range=chr13:23474438-23493355 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 23477438	 23480437	+	NA	NA	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_21671_PI429285431	4.988412	P	4.9323506	P	1.03962367982423	0	lncRNA	23281-1_{1..972}	lnc-FAM43A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM43A-2:1	chr3	194365404	194366375	+	lnc-FAM43A-2	lnc-FAM43A-2:1	ENSG00000229334.1	AC046143.3	LSG1	"hg19_refFlat_TMEM44:range=chr3:194309350-1943539445'pad=0,hg19_refFlat_TMEM44:range=chr3:194309350-1943539445'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40;hg19_refFlat_LSG1:range=chr3:194362797-1943928915'pad=0,hg19_refFlat_LSG1:range=chr3:194362797-1943928915'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TMEM44:range=chr3:194309258-1943539445'pad=0,hg19_refFlat_TMEM44:range=chr3:194309258-1943539445'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40chr3:194361517-194376130"	NA	inner
LNCA_21_P0009004	1.1484257	A	1.7550521	A	0.656730607511756	0	lncRNA	TCONS_00024563	NA	NA	NA	NA	XLOC_011865	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011865), lincRNA [TCONS_00024563]"	chr16:3993292-3993233	hs|16p13.3	Agilent_HUMAN_G3V2	TCONS_00024563	TCONS_00024563	chr16	  3993233	  3993292	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14945_PI429285431	3.7213795	P	4.7106514	P	0.50373193455383	0	lncRNA	16609-1_{1..863}	lnc-SEL1L-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEL1L-1:3	chr14	 82085504	 82086366	-	lnc-SEL1L-1	lnc-SEL1L-1:3	XLOC_011088	linc-SEL1L-1	NA	NA	NA	inter
CUST_50153_PI429285431	1.4068487	A	2.255352	A	0.555360586892458	0	lncRNA	53878-1_{1..654}	hg19_lincRNAsTranscripts_TCONS_l2_00029182 range=chr9:2923225-2949837 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029182 range=chr9:2923225-2949837 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	  2923225	  2923878	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012915	3.850448	P	4.126409	P	0.825899990973708	0	lncRNA	TCONS_l2_00022997	NA	NA	NA	NA	XLOC_l2_012135	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012135), lincRNA [TCONS_l2_00022997]"	chr5:89556382-89531313	hs|5q14.3	Agilent_HUMAN_G3V2	TCONS_l2_00022997	TCONS_l2_00022997	chr5	 89531313	 89556382	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26892_PI429285431	0.91672117	A	0.90930724	A	1.0051521717005	0	lncRNA	28409-2_{3001..3801}	n323967|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054410|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054410|0.2331470|-0.2932716	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323967|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054410|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054410|0.2331470|-0.2932716	chr9	129916270	129917070	-	NA	NA	NA	NA	RALGPS1	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20chr9:129903270-129930793"	NA	inner
CUST_10474_PI429285431	5.0454235	P	4.464743	P	1.49555451539819	0	lncRNA	12000-1_{1..547}	lnc-CCDC140-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CCDC140-5:2	chr2	222506940	222507486	+	lnc-CCDC140-5	lnc-CCDC140-5:2	XLOC_001875	linc-CCDC140-4	NA	"hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50"	NA	inter
CUST_6808_PI429285431	0.9153491	A	0.91936505	A	0.997220226325932	0	lncRNA	6756-1_{1..435}	"transcript_id ""ENST00000444130.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444130.1"" | genecode_v17"	chr21	 23582258	 23582692	+	ENSG00000226043.1	ENST00000444130.1	AP000705.7	AP000705.7-001	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80"	NA	inter
LNCA_21_P0014525	4.9930267	P	4.8068385	P	1.13775363849495	0	lncRNA	XR_110210	XR_110210	XR_110210	NA	NA	LOC100506408	uncharacterized LOC100506408	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506408 (LOC100506408), miscRNA [XR_110210]"	chr6:112476873-112476932	hs|6q21	Agilent_HUMAN_G3V2	XR_110210	XR_110210	chr6	112476873	112476932	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36292_PI429285431	11.809498	P	10.942822	P	1.82345677370154	0	lncRNA	37523-1_{1..1089}	n344818|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_367|NULL|-1.3181200|-0.4043192	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344818|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_367|NULL|-1.3181200|-0.4043192	chr8	 32785503	 32786591	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38124_PI429285431	7.5684357	P	7.638206	P	0.952789685242383	0	lncRNA	39197-1_{1..506}	n381237|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001emi.3||-0.2494520|-0.3161189	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381237|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001emi.3||-0.2494520|-0.3161189	chr1	145004780	145005285	+	NA	NA	NA	NA	PDE4DIP	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-61.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60chr1:144994780-145015286"	NA	inner
CUST_23884_PI429285431	4.3905773	P	4.464004	P	0.950377970259828	0	lncRNA	25442-1_{1..743}	lnc-C11orf96-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf96-1:2	chr11	 44022649	 44023391	+	lnc-C11orf96-1	lnc-C11orf96-1:2	ENSG00000254409.1	RP11-613D13.4	NA	NA	NA	inter
CUST_11003_PI429285431	1.084777	A	1.8759967	A	0.577855348201126	0	lncRNA	12548-1_{1..484}	lnc-MYL2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYL2-1:3	chr12	111395374	111395857	-	lnc-MYL2-1	lnc-MYL2-1:3	XLOC_010198	linc-MYL2-1	NA	NA	NA	inter
CUST_35517_PI429285431	1.0624355	A	1.1064231	A	0.969970247224469	0	lncRNA	36924-1_{1..1317}	n342621|BC029578|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5123|NULL|-1.1728500|-0.3269323	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342621|BC029578|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5123|NULL|-1.1728500|-0.3269323	chr4	144833483	144834799	+	NA	NA	NA	NA	GYPE	NA	chr4:144823483-144826716	inter
CUST_35510_PI429285431	11.74095	P	11.878669	P	0.908955140361777	0	lncRNA	36917-1_{1..1843}	n342613|AK056803|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5114|NULL|1.2174400|-0.2639898	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342613|AK056803|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5114|NULL|1.2174400|-0.2639898	chr4	100869242	100871084	-	NA	NA	NA	NA	DNAJB14	NA	chr4:100859242-100867879	inner
CUST_4980_PI429285431	0.9079304	A	0.90167177	A	1.00434757514071	0	lncRNA	4924-1_{1..539}	"transcript_id ""ENST00000555889.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555889.1"" | genecode_v17"	chr14	 98252902	 98253440	-	ENSG00000258379.1	ENST00000555889.1	RP11-204N11.2	RP11-204N11.2-001	NA	NA	NA	inter
CUST_22036_PI429285431	1.2416418	A	1.7837873	A	0.686748852598625	0	lncRNA	23645-1_{1..440}	lnc-ZSWIM2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZSWIM2-5:1	chr2	186664807	186665246	-	lnc-ZSWIM2-5	lnc-ZSWIM2-5:1	ENSG00000231646.1	AC008174.3	FSIP2	"hg19_refFlat_FSIP2:range=chr2:186603355-1866979535'pad=0,hg19_refFlat_FSIP2:range=chr2:186603355-1866979535'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70chr2:186654807-186674878"	NA	inner
CUST_9660_PI429285431	2.4411175	A	2.3825746	A	1.04141341782785	0	lncRNA	11177-1_{1..913}	lnc-MKL2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MKL2-1:3	chr16	 14419870	 14420782	+	lnc-MKL2-1	lnc-MKL2-1:3	XLOC_011650	linc-BFAR	NA	NA	NA	inter
CUST_9632_PI429285431	1.1312952	A	0.8956476	A	1.17743514819135	0	lncRNA	11149-1_{1..531}	lnc-GP9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GP9-1:1	chr3	128777195	128777725	+	lnc-GP9-1	lnc-GP9-1:1	XLOC_002811	linc-GP9	GP9	NA	chr3:128767195-128781253	inter
CUST_2857_PI429285431	3.2088933	P	2.8633668	P	1.27061459855801	0	lncRNA	2839-1_{1..556}	"transcript_id ""ENST00000416572.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416572.1"" | genecode_v17"	chr7	 65844814	 65845369	-	ENSG00000179406.6	ENST00000416572.1	LINC00174	LINC00174-002	NA	NA	NA	inter
CUST_43224_PI429285431	0.92780447	A	0.9139934	A	1.00961907296405	0	lncRNA	48038-1_{1..430}	ENST00000366360 havana:sense_intronic chromosome:GRCh37:11:47535157:47536441:-1 gene:ENSG00000270072 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000366360 havana:sense_intronic chromosome:GRCh37:11:47535157:47536441:-1 gene:ENSG00000270072 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr11	 47535157	 47535586	-	ENSG00000270072	ENST00000366360	NA	NA	CELF1	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-62.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20chr11:47525157-47546441"	NA	inner
CUST_29234_PI429285431	4.4239445	P	4.7230935	P	0.812731659593553	0	lncRNA	30985-1_{1..518}	n326765|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007036|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007036|-1.1967800|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326765|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007036|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007036|-1.1967800|-1.0000000	chr1	   132670	   133187	-	NA	NA	NA	NA	NA	"hg19_refFlat_CIC:range=chr19:42788857-427993435'pad=0,hg19_refFlat_CIC:range=chr19:42788857-427993435'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40"	NA	inter
LNCA_21_P0014674	2.085223	A	2.964414	A	0.543672213294047	0	lncRNA	XR_111240	XR_111240	XR_111240	NA	NA	LOC100507511	uncharacterized LOC100507511	NA	THC2701259	NA	"PREDICTED: Homo sapiens hypothetical LOC100507511, transcript variant 2 (LOC100507511), miscRNA [XR_111240]"	chr12:4135706-4135765	hs|12p13.32	Agilent_HUMAN_G3V2	XR_111240	XR_111240	chr12	  4135706	  4135765	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10383_PI429285431	1.0355753	A	0.8913465	A	1.10513973730672	0	lncRNA	11912-1_{1..3000}	lnc-SRD5A1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRD5A1-1:10	chr5	  6586341	  6589340	+	lnc-SRD5A1-1	lnc-SRD5A1-1:10	XLOC_004271	linc-SRD5A1	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.41;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60"	NA	inter
LNCA_21_P0009740	5.6233916	P	5.4896526	P	1.09713343566282	0	lncRNA	TCONS_00027198	NA	NA	NA	NA	XLOC_013238	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013238), lincRNA [TCONS_00027198]"	chr19:13781391-13781332	hs|19p13.2	Agilent_HUMAN_G3V2	TCONS_00027198	TCONS_00027198	chr19	 13781332	 13781391	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25040_PI429285431	5.833628	P	5.7201996	P	1.0817959488832	0	lncRNA	26579-1_{1..571}	lnc-DCLK3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-DCLK3-1:1	chr3	 36825624	 36826194	-	lnc-DCLK3-1	lnc-DCLK3-1:1	ENSG00000242774.1	AC105749.5	NA	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_35298_PI429285431	5.937366	P	6.1065936	P	0.88931868328974	0	lncRNA	36702-1_{1..377}	n342320|X02067|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4812|NULL|-1.3833300|-0.3135110	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n342320|X02067|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4812|NULL|-1.3833300|-0.3135110	chr14	 50329253	 50329629	-	NA	NA	NA	NA	NEMF	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.10;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50chr14:50319253-50319539"	NA	inter
CUST_36791_PI429285431	0.9111882	A	1.2248056	A	0.804621726812126	0	lncRNA	37963-1_{1..922}	n345270|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_819|NULL|-1.3618600|-0.2661929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n345270|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_819|NULL|-1.3618600|-0.2661929	chr14	 70723078	 70723999	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35720_PI429285431	0.920219	A	1.1633266	A	0.844923365450138	0	lncRNA	37138-1_{1..792}	n342885|AX772842|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5391|NULL|2.4704400|-0.1900880	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342885|AX772842|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5391|NULL|2.4704400|-0.1900880	chr12	 11504756	 11505547	-	NA	NA	NA	NA	PRB1	NA	chr12:11504757-11508524	inner
CUST_42868_PI429285431	8.158603	P	8.253613	P	0.936265757712298	0	lncRNA	45928-1_{1..76}	ENST00000579995 ncrna:snoRNA chromosome:GRCh37:9:21524306:21524381:-1 gene:ENSG00000264379 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579995 ncrna:snoRNA chromosome:GRCh37:9:21524306:21524381:-1 gene:ENSG00000264379 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	 21524306	 21524381	-	ENSG00000264379	ENST00000579995	NA	NA	NA	NA	NA	inter
LNCA_21_P0007897	3.5997937	P	4.089572	P	0.712134523622601	0	lncRNA	THC2717591	NA	NA	NA	NA	XLOC_010240	NA	NA	THC2717591	NA	"BROAD Institute lincRNA (XLOC_010240), lincRNA [TCONS_00021431]"	chr12:126637719-126637660	hs|12q24.32	Agilent_HUMAN_G3V2	THC2717591	THC2717591	chr12	126637660	126637719	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37642_PI429285431	5.410625	P	5.29382	P	1.08433083676953	0	lncRNA	38736-1_{1..290}	n346120|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1670|NULL|-1.4996200|-0.3187693	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346120|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1670|NULL|-1.4996200|-0.3187693	chr17	 58073123	 58073412	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23855_PI429285431	2.168911	A	2.7193513	A	0.6828117074235	0	lncRNA	25418-1_{1..552}	lnc-HIVEP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-HIVEP2-3:1	chr6	143363314	143363865	-	lnc-HIVEP2-3	lnc-HIVEP2-3:1	ENSG00000227192.1	RP1-45I4.3	NA	NA	NA	inter
CUST_24707_PI429285431	0.9173481	A	1.097831	A	0.882407586703593	0	lncRNA	26253-1_{1..2003}	lnc-ARL15-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARL15-2:1	chr5	 52967195	 52969197	-	lnc-ARL15-2	lnc-ARL15-2:1	ENSG00000250854.1	CTD-2188H20.1	NDUFS4	NA	chr5:52957195-52978075	inner
CUST_47910_PI429285431	4.1395044	P	3.5026755	A	1.55490765269624	0	lncRNA	51802-1_{1..3000}	"gi|410171988|ref|XR_171519.1| PREDICTED: Homo sapiens putative POM121-like protein 1-like (LOC101060558), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171988|ref|XR_171519.1| PREDICTED: Homo sapiens putative POM121-like protein 1-like (LOC101060558), misc_RNA"	NA	NA	NA	NA	NA	XR_171519.1	NA	NA	NA	NA	NA	Unknown
CUST_11664_PI429285431	3.1027558	A	3.3863554	P	0.821538675780571	0	lncRNA	13241-1_{1..781}	lnc-RP11-552I14.1.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-552I14.1.1-1:4	chr12	103561816	103562596	+	lnc-RP11-552I14.1.1-1	lnc-RP11-552I14.1.1-1:4	XLOC_009858	linc-STAB2-2	NA	NA	NA	inter
CUST_11718_PI429285431	0.91842324	A	0.91847664	A	0.99996298662557	0	lncRNA	13296-1_{1..1846}	lnc-TRAF5-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRAF5-6:3	chr1	211859812	211861657	+	lnc-TRAF5-6	lnc-TRAF5-6:3	XLOC_000550	linc-DTL-2	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10"	NA	inter
CUST_40741_PI429285431	4.2272577	P	3.948837	P	1.21286644786805	0	lncRNA	41471-2_{3001..4818}	n410453|NR_037596|lncRNA|Homosapiens||RefGeneNoncode|NR_037596||5.0770000|-0.0978022	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410453|NR_037596|lncRNA|Homosapiens||RefGeneNoncode|NR_037596||5.0770000|-0.0978022	chr4	120329677	120331494	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22848_PI429285431	0.9061059	A	0.90894085	A	0.998036891822852	0	lncRNA	24427-1_{1..3000}	lnc-HDAC9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-HDAC9-1:1	chr7	 19037466	 19040465	+	lnc-HDAC9-1	lnc-HDAC9-1:1	ENSG00000260214.1	GS1-465N13.1	HDAC9	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40chr7:19027466-19036993"	NA	inter
CUST_9669_PI429285431	2.0508478	A	2.1083324	A	0.960938095907878	0	lncRNA	11186-1_{1..251}	lnc-PPT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPT1-1:1	chr1	 40626759	 40627009	-	lnc-PPT1-1	lnc-PPT1-1:1	XLOC_000794	linc-PPT1-1	RLF	NA	chr1:40627041-40636915	inter
CUST_40487_PI429285431	0.8984113	A	0.92546767	A	0.981420716340644	0	lncRNA	41252-1_{1..2609}	n409422|NR_033821_5|lncRNA|Homosapiens||RefGeneNoncode|NR_033821_5||-0.9730160|-0.2293097	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409422|NR_033821_5|lncRNA|Homosapiens||RefGeneNoncode|NR_033821_5||-0.9730160|-0.2293097	chr6	  1976468	  1979076	+	NA	NA	NA	NA	GMDS	NA	chr6:1966468-2004306	inner
CUST_5478_PI429285431	1.326011	A	1.5621706	A	0.849002319274731	0	lncRNA	5412-1_{1..2481}	"transcript_id ""ENST00000501520.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000501520.1"" | genecode_v17"	chr16	 28296206	 28298686	-	ENSG00000246465.1	ENST00000501520.1	RP11-57A19.2	RP11-57A19.2-001	SBK1	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0,hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30chr16:28303840-28313385"	NA	inter
CUST_21296_PI429285431	1.1860404	A	1.9141147	A	0.60370920341423	0	lncRNA	22921-1_{1..491}	lnc-NCALD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NCALD-1:1	chr8	102504678	102505168	-	lnc-NCALD-1	lnc-NCALD-1:1	ENSG00000254024.1	KB-1562D12.1	GRHL2	NA	chr8:102504668-102514727	inner
LNCA_21_P0012861	0.9261518	A	0.9091972	A	1.01182135963896	0	lncRNA	TCONS_l2_00022637	NA	NA	NA	NA	XLOC_l2_011854	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011854), lincRNA [TCONS_l2_00022637]"	chr5:173786545-173786604	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_l2_00022637	TCONS_l2_00022637	chr5	173786545	173786604	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24423_PI429285431	5.813941	P	5.897956	P	0.943428441822899	0	lncRNA	25976-1_{1..478}	lnc-LYZL1-3:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LYZL1-3:11	chr10	 29757849	 29758326	+	lnc-LYZL1-3	lnc-LYZL1-3:11	ENSG00000224597.3	RP11-534G20.3	SVIL	NA	chr10:29747849-29768051	inner
CUST_20058_PI429285431	2.920864	A	2.0985339	A	1.76825960758369	0	lncRNA	21709-1_{1..506}	lnc-RPE-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPE-2:1	chr2	211095007	211095512	+	lnc-RPE-2	lnc-RPE-2:1	ENSG00000231294.1	AC006994.2	ACADL	NA	chr2:211085007-211090215	inter
CUST_40477_PI429285431	1.1949513	A	1.1166741	A	1.05575655163554	0	lncRNA	41244-1_{1..2226}	n409409|NR_033808|lncRNA|Homosapiens||RefGeneNoncode|NR_033808||6.8636900|-0.3092048	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409409|NR_033808|lncRNA|Homosapiens||RefGeneNoncode|NR_033808||6.8636900|-0.3092048	chr7	 99245812	 99248037	-	NA	NA	NA	NA	CYP3A5	NA	chr7:99245813-99277621	inner
CUST_39509_PI429285431	11.08372	P	12.241895	P	0.448078994167072	0	lncRNA	40455-1_{1..1171}	n387280|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011bfh.1||1.6423300|-0.2776299	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387280|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011bfh.1||1.6423300|-0.2776299	chr3	 62109160	 62110330	-	NA	NA	NA	NA	PTPRG	NA	chr3:62099160-62120392	inner
CUST_37738_PI429285431	0.91232777	A	0.9110726	A	1.00087039612167	0	lncRNA	38831-1_{1..296}	n346239|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1789|NULL|-1.6031600|-0.1949508	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346239|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1789|NULL|-1.6031600|-0.1949508	chr4	 11545613	 11545908	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48249_PI429285431	4.508336	P	3.8862839	P	1.53906279928308	0	lncRNA	52111-1_{1..316}	hg19_lincRNAsTranscripts_TCONS_l2_00000966 range=chr1:708380-743969 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000966 range=chr1:708380-743969 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	   708380	   708695	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30779_PI429285431	0.9076593	A	0.898576	A	1.00631592565676	0	lncRNA	32566-1_{1..429}	n336632|Z47216|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327311|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327311|3.2225600|-0.0456996	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336632|Z47216|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327311|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327311|3.2225600|-0.0456996	chr14	106330797	106331225	-	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106859077	inter
LNCA_21_P0001843	0.9237172	A	0.90745485	A	1.01133597270799	0	lncRNA	BC042077	NA	BC042077	NA	Hs.434806	XLOC_001384	NA	ENST00000447260	THC2608991	NA	"BROAD Institute lincRNA (XLOC_001384), lincRNA [TCONS_00002846]"	chr2:21061362-21061421	hs|2p24.1	Agilent_HUMAN_G3V2	BC042077	BC042077	chr2	 21061362	 21061421	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17874_PI429285431	1.1297697	A	1.8328769	A	0.614247846608785	0	lncRNA	19611-1_{1..378}	lnc-SPANXN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPANXN2-1:1	chrX	144314844	144315221	-	lnc-SPANXN2-1	lnc-SPANXN2-1:1	XLOC_008251	linc-SPANXN2	SPANXN1	NA	chrX:144304844-144325139	inter
CUST_35347_PI429285431	0.91833496	A	0.9126322	A	1.00396067483903	0	lncRNA	36758-1_{1..2287}	n342391|D90064|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4883|NULL|3.5613900|-0.2394350	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342391|D90064|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4883|NULL|3.5613900|-0.2394350	chr19	 43084395	 43086681	-	NA	NA	NA	NA	CEACAM8	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80chr19:43074395-43099082"	NA	inter
CUST_49211_PI429285431	3.0384552	P	3.2416449	A	0.868627961732975	0	lncRNA	53030-1_{1..261}	hg19_lincRNAsTranscripts_TCONS_l2_00021404 range=chr4:174986062-175041501 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021404 range=chr4:174986062-175041501 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	174986062	174986322	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1848_PI429285431	0.9139144	A	1.0128392	A	0.933728613940857	0	lncRNA	1838-1_{1..138}	"transcript_id ""ENST00000503597.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503597.1"" | genecode_v17"	chr4	117411232	117411369	-	ENSG00000250791.1	ENST00000503597.1	RP11-55L3.1	RP11-55L3.1-002	NA	NA	NA	inter
CUST_39764_PI429285431	9.369584	P	9.435415	P	0.955394846569898	0	lncRNA	40681-1_{1..1344}	n405916|NR_003189|lncRNA|Homosapiens||RefGeneNoncode|NR_003189||2.8926100|-0.2047565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405916|NR_003189|lncRNA|Homosapiens||RefGeneNoncode|NR_003189||2.8926100|-0.2047565	chr20	 43991808	 43993151	+	NA	NA	NA	NA	SYS1	NA	chr20:43990577-44005442	inter
CUST_22324_PI429285431	0.91242856	A	0.9142823	A	0.99871591049489	0	lncRNA	23923-1_{1..389}	lnc-TBCK-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBCK-3:1	chr4	106748270	106748658	-	lnc-TBCK-3	lnc-TBCK-3:1	ENSG00000251175.1	RP11-45L9.1	GSTCD	NA	chr4:106738270-106758329	inner
CUST_3290_PI429285431	0.91314185	A	0.9079488	A	1.00360603411886	0	lncRNA	3268-1_{1..537}	"transcript_id ""ENST00000518970.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518970.1"" | genecode_v17"	chr8	124575310	124575846	-	ENSG00000254113.1	ENST00000518970.1	RP11-174I12.2	RP11-174I12.2-001	NA	NA	NA	inter
CUST_28740_PI429285431	0.914862	A	2.192236	A	0.412545743253174	0	lncRNA	30441-1_{1..1638}	n326135|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097749|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097749|-0.9552930|-0.2550471	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326135|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097749|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097749|-0.9552930|-0.2550471	chr1	245754603	245756240	-	NA	NA	NA	NA	KIF26B	NA	chr1:245744603-245766677	inner
CUST_18172_PI429285431	8.050319	P	6.84641	P	2.30362997544532	0	lncRNA	19907-1_{1..1859}	lnc-TKT-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TKT-1:5	chr3	 53381410	 53383268	-	lnc-TKT-1	lnc-TKT-1:5	ENSG00000162290	DCP1A	DCP1A	NA	chr3:53371410-53381654	inner
CUST_39824_PI429285431	2.2498193	A	1.6265086	A	1.54040605587766	0	lncRNA	40732-2_{3001..4509}	n406343|NR_004859|lncRNA|Homosapiens||RefGeneNoncode|NR_004859||1.9132300|-0.2484485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406343|NR_004859|lncRNA|Homosapiens||RefGeneNoncode|NR_004859||1.9132300|-0.2484485	chr15	 85177690	 85179198	+	NA	NA	NA	NA	WDR73	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.61;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00chr15:85185999-85195694"	NA	inter
CUST_13507_PI429285431	0.9142909	A	0.9177308	A	0.997618483334816	0	lncRNA	15147-1_{1..700}	lnc-MTHFSD-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTHFSD-5:1	chr16	 86755302	 86756001	-	lnc-MTHFSD-5	lnc-MTHFSD-5:1	XLOC_012048	linc-MTHFSD-6	NA	NA	NA	inter
CUST_13596_PI429285431	1.207977	A	1.2624931	A	0.962917364831124	0	lncRNA	15235-1_{1..405}	lnc-C1orf198-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf198-2:1	chr1	231025243	231025647	-	lnc-C1orf198-2	lnc-C1orf198-2:1	XLOC_001254	linc-C1orf198	NA	NA	NA	inter
CUST_8004_PI429285431	6.8730593	P	7.019817	P	0.903278202591481	0	lncRNA	9615-1_{1..1783}	lnc-C20orf96-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C20orf96-3:1	chr20	   307819	   309601	-	lnc-C20orf96-3	lnc-C20orf96-3:1	ENSG00000246892	AL034548.1	SOX12	NA	chr20:306239-310868	inner
CUST_7732_PI429285431	1.0419956	A	2.0701284	A	0.490344363744823	0	lncRNA	9363-1_{1..3000}	lnc-PDCD7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDCD7-1:1	chr15	 65386813	 65389812	-	lnc-PDCD7-1	lnc-PDCD7-1:1	ENSG00000246922	ENST00000502113	LOC390595	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr15:65385342-65398697"	NA	inner
CUST_42470_PI429285431	10.464443	P	10.697404	P	0.850886730995446	0	lncRNA	45224-1_{1..89}	ENST00000577153 ncrna:snoRNA chromosome:GRCh37:HG115_PATCH:101837356:101837444:-1 gene:ENSG00000262778 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577153 ncrna:snoRNA chromosome:GRCh37:HG115_PATCH:101837356:101837444:-1 gene:ENSG00000262778 gene_biotype:snoRNA transcript_biotype:snoRNA	chrHG115_PATCH	101837356	101837444	-	ENSG00000262778	ENST00000577153	NA	NA	NA	NA	NA	Unknown
CUST_17047_PI429285431	1.6986614	A	0.9073304	A	1.73067040630563	0	lncRNA	18757-1_{1..805}	lnc-COL6A3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL6A3-1:1	chr2	238203279	238204083	-	lnc-COL6A3-1	lnc-COL6A3-1:1	XLOC_002530	linc-IQCA1-1	NA	NA	NA	inter
CUST_50759_PI429285431	0.9227129	A	0.91623646	A	1.00449921734736	0	lncRNA	54423-1_{1..252}	hg19_lincRNAsTranscripts_TCONS_l2_00004761 range=chr11:112151235-112214061 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004761 range=chr11:112151235-112214061 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	112151235	112151486	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41015_PI429285431	5.3026643	P	4.5671697	P	1.66496817362049	0	lncRNA	41675-1_{1..651}	n411620|NR_040089|lncRNA|Homosapiens||RefGeneNoncode|NR_040089||-0.7825320|-0.2558921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411620|NR_040089|lncRNA|Homosapiens||RefGeneNoncode|NR_040089||-0.7825320|-0.2558921	chr17	  6888441	  6889091	-	NA	NA	NA	NA	ALOX12	"hg19_refFlat_ALOX12:range=chr17:6899437-69137425'pad=0,hg19_refFlat_ALOX12:range=chr17:6899437-69137425'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60chr17:6899384-6914055"	NA	inner
CUST_35595_PI429285431	4.7008286	P	5.020858	P	0.801053553131741	0	lncRNA	37010-1_{1..2261}	n342734|AK097625|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5237|NULL|-0.7387150|-0.2718533	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342734|AK097625|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5237|NULL|-0.7387150|-0.2718533	chr6	 29867167	 29869427	-	NA	NA	NA	NA	HLA-A	"hg19_refFlat_HLA-C:range=chr6_ssto_hap7:2570423-25733175'pad=0,hg19_refFlat_HLA-C:range=chr6_ssto_hap7:2570423-25733175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9950665'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9950665'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_HLA-F:range=chr6:29691241-296941845'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296941845'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_HLA-A:range=chr6_apd_hap1:1150217-11531195'pad=0,hg19_refFlat_HLA-A:range=chr6_apd_hap1:1150217-11531195'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30;hg19_refFlat_HLA-C:range=chr6_qbl_hap6:2530195-25330895'pad=0,hg19_refFlat_HLA-C:range=chr6_qbl_hap6:2530195-25330895'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_HLA-A:range=chr6_mann_hap4:1202716-12056335'pad=0,hg19_refFlat_HLA-A:range=chr6_mann_hap4:1202716-12056335'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.40;hg19_refFlat_HLA-C:range=chr6_mcf_hap5:2617482-26203755'pad=0,hg19_refFlat_HLA-C:range=chr6_mcf_hap5:2617482-26203755'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_HLA-G:range=chr6_mcf_hap5:1095901-10984385'pad=0,hg19_refFlat_HLA-G:range=chr6_mcf_hap5:1095901-10984385'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_HLA-G:range=chr6_dbb_hap3:1096243-10987805'pad=0,hg19_refFlat_HLA-G:range=chr6_dbb_hap3:1096243-10987805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9950435'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9950435'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10319385'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10319385'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_HLA-A:range=chr6_dbb_hap3:1203692-12066085'pad=0,hg19_refFlat_HLA-A:range=chr6_dbb_hap3:1203692-12066085'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30;hg19_refFlat_HLA-G:range=chr6:29795622-297981595'pad=0,hg19_refFlat_HLA-G:range=chr6:29795622-297981595'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_HLA-E:range=chr6_ssto_hap7:1789599-17926485'pad=0,hg19_refFlat_HLA-E:range=chr6_ssto_hap7:1789599-17926485'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_HLA-G:range=chr6_qbl_hap6:1096207-10987445'pad=0,hg19_refFlat_HLA-G:range=chr6_qbl_hap6:1096207-10987445'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_HLA-B:range=chr6_cox_hap2:2834949-28376235'pad=0,hg19_refFlat_HLA-B:range=chr6_cox_hap2:2834949-28376235'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_HLA-B:range=chr6_mann_hap4:2668715-26713905'pad=0,hg19_refFlat_HLA-B:range=chr6_mann_hap4:2668715-26713905'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_HLA-E:range=chr6_mann_hap4:1805387-18084365'pad=0,hg19_refFlat_HLA-E:range=chr6_mann_hap4:1805387-18084365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_HLA-F:range=chr6_mcf_hap5:991775-13591805'pad=0,hg19_refFlat_HLA-F:range=chr6_mcf_hap5:991775-13591805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_HLA-F:range=chr6_mcf_hap5:991775-9938785'pad=0,hg19_refFlat_HLA-F:range=chr6_mcf_hap5:991775-9938785'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_HLA-G:range=chr6_mann_hap4:1095951-10984885'pad=0,hg19_refFlat_HLA-G:range=chr6_mann_hap4:1095951-10984885'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_HLA-B:range=chr6_ssto_hap7:2656019-26586945'pad=0,hg19_refFlat_HLA-B:range=chr6_ssto_hap7:2656019-26586945'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9946895'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9946895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_HLA-E:range=chr6_qbl_hap6:1750224-17532735'pad=0,hg19_refFlat_HLA-E:range=chr6_qbl_hap6:1750224-17532735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_HLA-C:range=chr6_mann_hap4:2583839-25867335'pad=0,hg19_refFlat_HLA-C:range=chr6_mann_hap4:2583839-25867335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_HLA-E:range=chr6_cox_hap2:1969373-19724225'pad=0,hg19_refFlat_HLA-E:range=chr6_cox_hap2:1969373-19724225'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_HLA-A:range=chr6_qbl_hap6:1203109-12060255'pad=0,hg19_refFlat_HLA-A:range=chr6_qbl_hap6:1203109-12060255'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_HLA-C:range=chr6_cox_hap2:2750201-27531035'pad=0,hg19_refFlat_HLA-C:range=chr6_cox_hap2:2750201-27531035'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_HLA-G:range=chr6_ssto_hap7:1133174-11357115'pad=0,hg19_refFlat_HLA-G:range=chr6_ssto_hap7:1133174-11357115'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_HLA-A:range=chr6_mcf_hap5:1150182-12951355'pad=0,hg19_refFlat_HLA-A:range=chr6_mcf_hap5:1150182-12951355'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30;hg19_refFlat_HLA-B:range=chr6_qbl_hap6:2615766-26184515'pad=0,hg19_refFlat_HLA-B:range=chr6_qbl_hap6:2615766-26184515'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_HLA-A:range=chr6_ssto_hap7:1239666-12425835'pad=0,hg19_refFlat_HLA-A:range=chr6_ssto_hap7:1239666-12425835'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80;hg19_refFlat_HLA-B:range=chr6_mcf_hap5:2702040-27047285'pad=0,hg19_refFlat_HLA-B:range=chr6_mcf_hap5:2702040-27047285'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_HLA-C:range=chr6:31236946-312398485'pad=0,hg19_refFlat_HLA-C:range=chr6:31236946-312398485'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_HLA-C:range=chr6_dbb_hap3:2532552-25354465'pad=0,hg19_refFlat_HLA-C:range=chr6_dbb_hap3:2532552-25354465'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_HLA-E:range=chr6:30457309-304603585'pad=0,hg19_refFlat_HLA-E:range=chr6:30457309-304603585'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_HLA-A:range=chr6:29910331-299132325'pad=0,hg19_refFlat_HLA-A:range=chr6:29910331-299132325'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.40;hg19_refFlat_HLA-A:range=chr6_cox_hap2:1422082-14249845'pad=0,hg19_refFlat_HLA-A:range=chr6_cox_hap2:1422082-14249845'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_HLA-E:range=chr6_mcf_hap5:1839173-18422225'pad=0,hg19_refFlat_HLA-E:range=chr6_mcf_hap5:1839173-18422225'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_HLA-E:range=chr6_dbb_hap3:1750949-17539985'pad=0,hg19_refFlat_HLA-E:range=chr6_dbb_hap3:1750949-17539985'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12103735'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12103735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_HLA-G:range=chr6_cox_hap2:1311513-13140505'pad=0,hg19_refFlat_HLA-G:range=chr6_cox_hap2:1311513-13140505'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_HLA-B:range=chr6:31322260-313249355'pad=0,hg19_refFlat_HLA-B:range=chr6:31322260-313249355'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60chr6:29910247-29913661"	NA	inner
CUST_33229_PI429285431	6.437842	P	6.296688	P	1.10278687340258	0	lncRNA	34817-2_{3001..6000}	n339927|D86975|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2376|NULL|7.1807700|-0.1371148	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339927|D86975|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2376|NULL|7.1807700|-0.1371148	chr18	 74075229	 74078228	-	NA	NA	NA	NA	ZNF516	NA	chr18:74069637-74207146	inner
LNCA_21_P0001511	0.926821	A	3.2662878	P	0.197583338524072	0	lncRNA	TCONS_00001504	NA	NA	NA	NA	XLOC_000846	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000846), lincRNA [TCONS_00001504]"	chr1:57093488-57093429	hs|1p32.2	Agilent_HUMAN_G3V2	TCONS_00001504	TCONS_00001504	chr1	 57093429	 57093488	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32216_PI429285431	1.6788973	A	0.95572025	A	1.65081339523467	0	lncRNA	33909-1_{1..1155}	n338790|BC039360|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1212|NULL|-1.1427300|-0.3656192	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338790|BC039360|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1212|NULL|-1.1427300|-0.3656192	chr13	 81799999	 81801153	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40"	NA	inter
CUST_2568_PI429285431	2.2458727	A	1.7827146	A	1.37855621594446	0	lncRNA	2556-1_{1..517}	"transcript_id ""ENST00000443221.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443221.2"" | genecode_v17"	chr6	 81162916	 81163432	+	ENSG00000233967.2	ENST00000443221.2	RP11-250B2.3	RP11-250B2.3-003	NA	NA	NA	inter
CUST_1627_PI429285431	2.6970248	A	2.4505033	A	1.18634325683069	0	lncRNA	1613-1_{1..3000}	"transcript_id ""ENST00000445430.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445430.1"" | genecode_v17"	chr3	195384948	195387947	+	ENSG00000242086.3	ENST00000445430.1	AC069513.3	AC069513.3-038	NA	NA	NA	inter
CUST_9070_PI429285431	0.92338336	A	0.997265	A	0.95007832495875	0	lncRNA	10593-1_{1..2090}	lnc-TEX13B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TEX13B-1:1	chrX	107179022	107181111	-	lnc-TEX13B-1	lnc-TEX13B-1:1	ENSG00000236064	RP6-191P20.4	MID2	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90chrX:107169022-107174867"	NA	inter
CUST_41362_PI429285431	0.916476	A	1.0616814	A	0.904250628036069	0	lncRNA	42438-1_{1..68}	ENST00000578635 ncrna:miRNA chromosome:GRCh37:15:36219057:36219124:1 gene:ENSG00000265098 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578635 ncrna:miRNA chromosome:GRCh37:15:36219057:36219124:1 gene:ENSG00000265098 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 36219057	 36219124	+	ENSG00000265098	ENST00000578635	NA	NA	NA	NA	NA	inter
CUST_4188_PI429285431	1.1118338	A	0.90649927	A	1.15295366100127	0	lncRNA	4147-1_{1..424}	"transcript_id ""ENST00000537293.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537293.1"" | genecode_v17"	chr12	 22895516	 22895939	+	ENSG00000256923.1	ENST00000537293.1	RP11-449P1.1	RP11-449P1.1-001	NA	NA	NA	inter
CUST_41747_PI429285431	5.842987	P	5.957218	P	0.923874632569944	0	lncRNA	43292-1_{1..83}	ENST00000516662 ncrna:miRNA chromosome:GRCh37:Y:27606157:27606239:1 gene:ENSG00000252471 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516662 ncrna:miRNA chromosome:GRCh37:Y:27606157:27606239:1 gene:ENSG00000252471 gene_biotype:miRNA transcript_biotype:miRNA	chrY	 27606157	 27606239	+	ENSG00000252471	ENST00000516662	NA	NA	NA	NA	NA	inter
CUST_7418_PI429285431	0.95292246	A	0.90556484	A	1.03337051122543	0	lncRNA	9061-1_{1..557}	lnc-GLCCI1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GLCCI1-2:3	chr7	  8380647	  8381203	+	lnc-GLCCI1-2	lnc-GLCCI1-2:3	ENSG00000229970	AC007128.1	NA	NA	NA	inter
CUST_28895_PI429285431	0.92931956	A	1.0615182	A	0.912439849011394	0	lncRNA	30611-1_{1..353}	n326318|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000085303|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000085303|-1.3901300|-0.4035020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326318|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000085303|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000085303|-1.3901300|-0.4035020	chr1	178065366	178065718	-	NA	NA	NA	NA	RASAL2	NA	chr1:178062864-178081882	inner
LNCA_21_P0007349	2.1535378	A	1.3874718	A	1.70062611810597	0	lncRNA	TCONS_00019631	NA	NA	NA	NA	XLOC_009432	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009432), lincRNA [TCONS_00019631]"	chr11:45746372-45746313	hs|11p11.2	Agilent_HUMAN_G3V2	TCONS_00019631	TCONS_00019631	chr11	 45746313	 45746372	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00315519	1.1854047	A	0.9255233	A	1.19738026722715	0	lncRNA	ENST00000511417	NA	NA	NA	NA	XLOC_004914	NA	ENST00000511417	NA	NA	"BROAD Institute lincRNA (XLOC_004914), lincRNA [TCONS_00009717]"	chr5:87028891-87028832	hs|5q14.3	Agilent_HUMAN_G3V2	ENST00000511417	ENST00000511417	chr5	 87028832	 87028891	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45892_PI429285431	0.90463215	A	1.0650462	A	0.894768237746542	0	lncRNA	50208-1_{1..3000}	"gi|403048746|ref|NR_073141.1| Homo sapiens progesterone receptor (PGR), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|403048746|ref|NR_073141.1| Homo sapiens progesterone receptor (PGR), transcript variant 4, non-coding RNA"	Chr11	100900355	100903354	-	5241	NR_073141.2	NA	NA	NA	NA	NA	inter
CUST_11598_PI429285431	0.92695636	A	0.9390446	A	0.991656075918167	0	lncRNA	13178-1_{1..3000}	lnc-ARFGEF2-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARFGEF2-3:3	chr20	 46996823	 46999822	+	lnc-ARFGEF2-3	lnc-ARFGEF2-3:3	XLOC_013551	linc-ARFGEF2-4	NA	NA	NA	inter
CUST_4624_PI429285431	5.253319	P	5.073552	P	1.13270093559154	0	lncRNA	4570-1_{1..215}	"transcript_id ""ENST00000435617.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435617.1"" | genecode_v17"	chr13	 48479464	 48479678	-	ENSG00000234689.1	ENST00000435617.1	LINC00444	LINC00444-001	NA	NA	NA	inter
CUST_1522_PI429285431	2.3721368	A	2.8652894	A	0.710470868085949	0	lncRNA	1509-1_{1..483}	"transcript_id ""ENST00000497285.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000497285.1"" | genecode_v17"	chr3	161534697	161535179	-	ENSG00000240354.1	ENST00000497285.1	RP11-774I5.1	RP11-774I5.1-001	NA	NA	NA	inter
CUST_17638_PI429285431	0.9102514	A	0.9103645	A	0.999921608126682	0	lncRNA	19366-1_{1..1064}	lnc-EGR4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EGR4-1:1	chr2	 73534180	 73535243	-	lnc-EGR4-1	lnc-EGR4-1:1	XLOC_002161	linc-EGR4-3	NA	NA	NA	inter
CUST_42521_PI429285431	0.92684203	A	0.91124344	A	1.01087078086458	0	lncRNA	45313-1_{1..70}	ENST00000390977 ncrna:snoRNA chromosome:GRCh37:15:74783300:74783369:-1 gene:ENSG00000212279 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390977 ncrna:snoRNA chromosome:GRCh37:15:74783300:74783369:-1 gene:ENSG00000212279 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 74783300	 74783369	-	ENSG00000212279	ENST00000390977	NA	NA	NA	NA	NA	inter
LNCA_21_P0011483	1.002739	A	0.9514781	A	1.03617012979927	0	lncRNA	TCONS_l2_00010194	NA	NA	NA	NA	XLOC_l2_005503	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005503), lincRNA [TCONS_l2_00010194]"	chr16:56135945-56135358	hs|16q12.2	Agilent_HUMAN_G3V2	TCONS_l2_00010194	TCONS_l2_00010194	chr16	 56135358	 56135945	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45724_PI429285431	4.2798314	P	4.418975	P	0.908058028818063	0	lncRNA	50085-7_{18001..21000}	"gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	Chr11	  2647558	  2650557	-	10984	NR_002728.3	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.02;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0,hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_10303_PI429285431	4.9849496	P	4.85844	P	1.0916494098834	0	lncRNA	11830-1_{1..596}	lnc-ALX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALX1-2:1	chr12	 85818315	 85818910	+	lnc-ALX1-2	lnc-ALX1-2:1	XLOC_009820	linc-NTS	NA	NA	NA	inter
CUST_2252_PI429285431	2.0333745	A	1.823936	A	1.15623808598184	0	lncRNA	2244-1_{1..572}	"transcript_id ""ENST00000520032.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520032.1"" | genecode_v17"	chr5	 89648854	 89649425	-	ENSG00000253321.1	ENST00000520032.1	RP11-61G23.2	RP11-61G23.2-001	NA	NA	NA	inter
CUST_46669_PI429285431	2.568018	A	3.3039756	P	0.600419359472318	0	lncRNA	50838-1_{1..3000}	"gi|153791676|ref|NR_003610.1| Homo sapiens pyridoxal-dependent decarboxylase domain containing 2, pseudogene (PDXDC2P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|153791676|ref|NR_003610.1| Homo sapiens pyridoxal-dependent decarboxylase domain containing 2, pseudogene (PDXDC2P), non-coding RNA"	Chr16	 70010200	 70013199	-	283970	NR_003610.1	NA	NA	NA	NA	NA	inter
CUST_46235_PI429285431	0.9085005	A	0.90437186	A	1.00286585390581	0	lncRNA	50474-1_{1..522}	"gi|388556521|ref|NR_046636.1| Homo sapiens PCDH9 antisense RNA 3 (PCDH9-AS3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|388556521|ref|NR_046636.1| Homo sapiens PCDH9 antisense RNA 3 (PCDH9-AS3), non-coding RNA"	Chr13	 67551521	 67552042	+	100874086	NR_046636.1	NA	NA	NA	NA	NA	inter
CUST_4851_PI429285431	8.423557	P	7.9692507	P	1.37012384142535	0	lncRNA	4794-1_{1..470}	"transcript_id ""ENST00000553288.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553288.1"" | genecode_v17"	chr14	 62023031	 62023500	-	ENSG00000250548.2	ENST00000553288.1	RP11-47I22.2	RP11-47I22.2-002	PRKCH	NA	chr14:62013031-62017698	inter
LNCA_21_P0010741	5.119896	P	5.071072	P	1.03442138071882	0	lncRNA	ENST00000426045	NA	NA	NA	NA	XLOC_l2_000636	NA	ENST00000426045	THC2515781	NA	"BROAD Institute lincRNA (XLOC_l2_000636), lincRNA [TCONS_l2_00002314]"	chr1:223008514-223010280	hs|1q41	Agilent_HUMAN_G3V2	ENST00000426045	ENST00000426045	chr1	223008514	223010280	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26003_PI429285431	0.977916	A	0.9272458	A	1.03574596502937	0	lncRNA	27522-1_{1..1300}	lnc-AL078585.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AL078585.1-1:1	chr6	163474957	163476256	-	lnc-AL078585.1-1	lnc-AL078585.1-1:1	ENSG00000225437.1	RP1-257A15.1	PACRG	NA	chr6:163464957-163485193	inner
CUST_51819_PI429285431	0.98631775	A	0.9293344	A	1.04028826058934	0	lncRNA	55372-1_{1..357}	hg19_lincRNAsTranscripts_TCONS_l2_00013034 range=chr19:35034794-35036389 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013034 range=chr19:35034794-35036389 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 35034794	 35035150	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5407_PI429285431	2.9057488	A	2.7779648	A	1.09261414089349	0	lncRNA	5340-2_{3001..3385}	"transcript_id ""ENST00000571152.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000571152.1"" | genecode_v17"	chr16	  3043195	  3043579	+	ENSG00000262152.2	ENST00000571152.1	LINC00514	LINC00514-002	PKMYT1	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-54.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-57.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-60.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr16:3030195-3030540"	NA	inter
CUST_1169_PI429285431	6.6594467	P	7.0778127	P	0.748271638885188	0	lncRNA	1158-1_{1..1407}	"transcript_id ""ENST00000295549.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000295549.4"" | genecode_v17"	chr2	177494317	177495723	-	ENSG00000163364.5	ENST00000295549.4	AC017048.3	AC017048.3-001	NA	NA	NA	inter
CUST_45099_PI429285431	3.7404723	P	4.0618076	P	0.800328782826697	0	lncRNA	49583-1_{1..3000}	"gi|224451010|ref|NR_027040.1| Homo sapiens ATP6V0E2 antisense RNA 1 (ATP6V0E2-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224451010|ref|NR_027040.1| Homo sapiens ATP6V0E2 antisense RNA 1 (ATP6V0E2-AS1), non-coding RNA"	Chr7	149564783	149567782	-	401431	NR_027040.1	NA	NA	NA	NA	NA	inter
CUST_27013_PI429285431	5.572895	P	5.8765035	P	0.810223311769911	0	lncRNA	28542-2_{3001..4375}	n324117|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052436|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052436|-1.2179500|-0.3089896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324117|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052436|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052436|-1.2179500|-0.3089896	chr9	 37072892	 37074266	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30"	NA	inter
CUST_9997_PI429285431	9.501734	P	9.910825	P	0.753097729130071	0	lncRNA	11523-1_{1..481}	lnc-KIAA0513-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA0513-1:4	chr16	 85181229	 85181709	+	lnc-KIAA0513-1	lnc-KIAA0513-1:4	XLOC_011807	linc-KIAA0182-2	NA	NA	NA	inter
CUST_18474_PI429285431	6.4327626	P	7.473561	P	0.48605841030467	0	lncRNA	20195-1_{1..471}	lnc-FAM127B-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FAM127B-1:4	chrX	134232063	134232533	-	lnc-FAM127B-1	lnc-FAM127B-1:4	ENSG00000196972	NCRNA00087	NA	NA	NA	inter
CUST_49682_PI429285431	1.0715649	A	1.0296421	A	1.02948499322734	0	lncRNA	53459-2_{3001..4102}	hg19_lincRNAsTranscripts_TCONS_l2_00025618 range=chr7:5862779-5889683 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025618 range=chr7:5862779-5889683 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  5865779	  5866880	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_17887_PI429285431	11.99092	P	12.262001	P	0.828698375976464	0	lncRNA	19621-1_{1..474}	lnc-CCDC90A-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC90A-5:1	chr6	 14448747	 14449220	-	lnc-CCDC90A-5	lnc-CCDC90A-5:1	XLOC_005617	linc-CCDC90A-4	NA	NA	NA	inter
CUST_40878_PI429285431	12.500522	P	12.815856	P	0.803664911809684	0	lncRNA	41570-3_{6001..6285}	n410678|NR_037928|lncRNA|Homosapiens||RefGeneNoncode|NR_037928||4.9714000|-0.1915328	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410678|NR_037928|lncRNA|Homosapiens||RefGeneNoncode|NR_037928||4.9714000|-0.1915328	chr17	  3572186	  3572470	-	NA	NA	NA	NA	CTNS	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_EMC6:range=chr17:3572441-35727735'pad=0,hg19_refFlat_EMC6:range=chr17:3572441-35727735'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80chr17:3556186-3566397"	NA	inner
CUST_13045_PI429285431	3.7133074	P	3.6105356	P	1.07383460312334	0	lncRNA	14670-1_{1..642}	lnc-CENPP-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CENPP-3:1	chr9	 94904281	 94904922	+	lnc-CENPP-3	lnc-CENPP-3:1	XLOC_007457	linc-CENPP-5	NA	NA	NA	inter
CUST_17553_PI429285431	5.4424105	P	5.352598	P	1.06423186046875	0	lncRNA	19280-1_{1..461}	lnc-CRYAA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYAA-1:1	chr21	 44777714	 44778174	+	lnc-CRYAA-1	lnc-CRYAA-1:1	XLOC_013960	linc-RRP1B-6	NA	NA	NA	inter
CUST_27798_PI429285431	0.918621	A	1.7065469	A	0.579176150098157	0	lncRNA	29384-1_{1..797}	n325026|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256830|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256830|-1.0555300|-0.1593028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325026|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256830|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256830|-1.0555300|-0.1593028	chr20	 23726777	 23727573	+	NA	NA	NA	NA	CST1	NA	chr20:23728190-23731574	inner
CUST_28766_PI429285431	0.9249941	A	0.92641634	A	0.999014664116441	0	lncRNA	30474-1_{1..3000}	n326172|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092806|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092806|-0.3579010|-0.3380227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326172|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092806|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092806|-0.3579010|-0.3380227	chr1	232927770	232930769	+	NA	NA	NA	NA	KIAA1383	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40chr1:232940638-232944013"	NA	inter
CUST_21581_PI429285431	1.5542572	A	1.910478	A	0.781208309514545	0	lncRNA	23195-1_{1..377}	lnc-VPS13C-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VPS13C-1:3	chr15	 61945388	 61945764	-	lnc-VPS13C-1	lnc-VPS13C-1:3	ENSG00000259675.1	RP11-507B12.1	NA	NA	NA	inter
CUST_49901_PI429285431	1.1298904	A	1.5095814	A	0.768602194138931	0	lncRNA	53650-1_{1..467}	hg19_lincRNAsTranscripts_TCONS_l2_00026076 range=chr7:80804833-80828289 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026076 range=chr7:80804833-80828289 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 80804833	 80805299	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44136_PI429285431	3.9967675	P	4.256523	P	0.835229457517193	0	lncRNA	48799-1_{1..1666}	"gi|336285480|ref|NR_038840.1| Homo sapiens uncharacterized LOC645206 (LOC645206), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336285480|ref|NR_038840.1| Homo sapiens uncharacterized LOC645206 (LOC645206), non-coding RNA"	Chr3	 28616769	 28618434	+	645206	NR_038840.1	NA	NA	NA	NA	NA	inter
CUST_21308_PI429285431	4.5376577	P	4.59138	P	0.963447327231577	0	lncRNA	22931-1_{1..494}	lnc-PTPRB-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPRB-1:4	chr12	 70637092	 70637585	-	lnc-PTPRB-1	lnc-PTPRB-1:4	ENSG00000257815.1	RP11-611E13.2	CNOT2	NA	chr12:70636774-70647129	inner
CUST_3098_PI429285431	5.341877	P	5.498898	P	0.896875104571549	0	lncRNA	3078-1_{1..306}	"transcript_id ""ENST00000519828.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519828.1"" | genecode_v17"	chr8	 50081241	 50081546	+	ENSG00000253474.1	ENST00000519828.1	RP11-10H3.1	RP11-10H3.1-001	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70"	NA	inter
CUST_15173_PI429285431	1.0450768	A	1.1199862	A	0.949401740686129	0	lncRNA	16837-1_{1..306}	lnc-HHIP-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HHIP-1:3	chr4	145773555	145773860	+	lnc-HHIP-1	lnc-HHIP-1:3	XLOC_003718	linc-ABCE1	NA	NA	NA	inter
CUST_2441_PI429285431	3.212008	P	3.9211159	P	0.611698269586237	0	lncRNA	2433-1_{1..457}	"transcript_id ""ENST00000502684.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502684.1"" | genecode_v17"	chr5	174178307	174178763	+	ENSG00000251670.1	ENST00000502684.1	CTD-2532K18.1	CTD-2532K18.1-001	NA	NA	NA	inter
CUST_10794_PI429285431	0.91076356	A	0.9101946	A	1.00039445079511	0	lncRNA	12331-1_{1..336}	lnc-VGLL4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VGLL4-1:1	chr3	 11766297	 11766632	-	lnc-VGLL4-1	lnc-VGLL4-1:1	XLOC_003047	linc-VGLL4	VGLL4	NA	chr3:11756297-11762220	inter
CUST_15579_PI429285431	2.3327293	A	4.803733	P	0.180365623283394	0	lncRNA	17264-1_{1..352}	lnc-IDO2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IDO2-1:1	chr8	 39891673	 39892024	+	lnc-IDO2-1	lnc-IDO2-1:1	XLOC_006779	linc-C8orf4-2	NA	NA	NA	inter
CUST_13166_PI429285431	0.90991277	A	1.1076734	A	0.871902892479085	0	lncRNA	14795-1_{1..824}	lnc-SMC3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMC3-1:2	chr10	112307061	112307884	+	lnc-SMC3-1	lnc-SMC3-1:2	XLOC_008611	linc-SMC3	NA	NA	NA	inter
CUST_8548_PI429285431	0.91081357	A	1.0014411	A	0.939114173258609	0	lncRNA	10107-1_{1..492}	lnc-ACACA-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ACACA-1:3	chr17	 35293863	 35294354	-	lnc-ACACA-1	lnc-ACACA-1:3	ENSG00000255509	RP11-445F12.1	LHX1	NA	chr17:35294772-35301915	inter
CUST_10476_PI429285431	0.9302853	A	0.91520584	A	1.01050710113366	0	lncRNA	12003-1_{1..972}	lnc-CTR9-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTR9-4:1	chr11	 10948661	 10949632	+	lnc-CTR9-4	lnc-CTR9-4:1	XLOC_009066	linc-USP47-2	NA	NA	NA	inter
CUST_34327_PI429285431	1.2472768	A	1.037385	A	1.15660143725066	0	lncRNA	35820-2_{3001..3758}	n341190|BX538274|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3656|NULL|-1.1217800|-0.4610055	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341190|BX538274|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3656|NULL|-1.1217800|-0.4610055	chr7	 15710571	 15711328	+	NA	NA	NA	NA	MEOX2	NA	chr7:15697571-15726308	inner
CUST_2036_PI429285431	1.3872321	A	2.0966825	A	0.611553067873735	0	lncRNA	2027-1_{1..718}	"transcript_id ""ENST00000511693.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511693.1"" | genecode_v17"	chr5	  1933977	  1934694	+	ENSG00000248994.1	ENST00000511693.1	RP11-259O2.1	RP11-259O2.1-001	NA	NA	NA	inter
CUST_24422_PI429285431	2.7716253	A	2.8322814	A	0.958827970256121	0	lncRNA	25975-1_{1..439}	lnc-SLC45A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC45A1-1:2	chr1	  8489887	  8490325	+	lnc-SLC45A1-1	lnc-SLC45A1-1:2	ENSG00000232912.1	RP5-1115A15.1	RERE	NA	chr1:8479887-8500101	inner
CUST_37496_PI429285431	2.290949	A	3.0707207	P	0.58245895745147	0	lncRNA	38598-1_{1..1150}	n345961|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1510|NULL|-1.2992700|-0.1795132	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345961|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1510|NULL|-1.2992700|-0.1795132	chr7	  5862828	  5863977	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014232	0.9748192	A	0.9250957	A	1.0350665289524	0	lncRNA	ENST00000440413	XR_108961	XR_108961	NA	NA	LOC100506231	NA	ENST00000440413	THC2641828	NA	"PREDICTED: Homo sapiens hypothetical LOC100506231 (LOC100506231), miscRNA [XR_108961]"	chr9:132475232-132475175	hs|9q34.11	Agilent_HUMAN_G3V2	ENST00000440413	ENST00000440413	chr9	132475175	132475232	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7500_PI429285431	3.6336937	P	3.987122	P	0.782721891248146	0	lncRNA	9140-1_{1..1839}	lnc-C10orf31-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf31-1:1	chr10	 11297266	 11299104	-	lnc-C10orf31-1	lnc-C10orf31-1:1	ENSG00000247043	ENST00000500991	CELF2	NA	chr10:11287266-11308627	inner
CUST_46342_PI429285431	5.626101	P	5.083151	P	1.45694861903163	0	lncRNA	50567-1_{1..3000}	"gi|332164716|ref|NR_038170.1| Homo sapiens fucosyltransferase 8 (alpha (1,6) fucosyltransferase) (FUT8), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|332164716|ref|NR_038170.1| Homo sapiens fucosyltransferase 8 (alpha (1,6) fucosyltransferase) (FUT8), transcript variant 2, non-coding RNA"	Chr14	 65879448	 65882447	+	2530	NR_038170.1	NA	NA	NA	NA	NA	inter
CUST_12411_PI429285431	0.92223924	A	0.9224686	A	0.999841032399355	0	lncRNA	14024-1_{1..723}	lnc-ERGIC1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERGIC1-2:4	chr5	172209075	172209797	+	lnc-ERGIC1-2	lnc-ERGIC1-2:4	XLOC_004635	linc-ERGIC1-2	NA	NA	NA	inter
CUST_6430_PI429285431	1.3938806	A	2.0174613	A	0.649057996076896	0	lncRNA	6370-1_{1..399}	"transcript_id ""ENST00000589198.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589198.1"" | genecode_v17"	chr19	 29451413	 29451811	-	ENSG00000267240.1	ENST00000589198.1	AC011524.3	AC011524.3-001	NA	NA	NA	inter
CUST_22545_PI429285431	5.9606714	P	6.3673806	P	0.754342073639817	0	lncRNA	24132-1_{1..143}	lnc-SERAC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SERAC1-2:1	chr6	158819542	158819684	-	lnc-SERAC1-2	lnc-SERAC1-2:1	ENSG00000238019.1	RP11-732M18.2	TULP4	NA	chr6:158809542-158829593	inner
CUST_13331_PI429285431	0.9225669	A	0.9245502	A	0.998626225689836	0	lncRNA	14967-1_{1..639}	lnc-DDI1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DDI1-2:1	chr11	104112378	104113016	+	lnc-DDI1-2	lnc-DDI1-2:1	XLOC_009265	linc-GRIA4-3	NA	NA	NA	inter
CUST_22788_PI429285431	14.155088	P	13.589826	P	1.47965619716519	0	lncRNA	24368-1_{1..1044}	lnc-NME4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NME4-1:3	chr16	   436667	   437710	+	lnc-NME4-1	lnc-NME4-1:3	ENSG00000236829.4	Z97634.5	TMEM8A	"hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80chr16:426667-431950"	NA	inter
CUST_49133_PI429285431	0.9233922	A	0.91960335	A	1.00262968225977	0	lncRNA	52959-2_{3001..4617}	hg19_lincRNAsTranscripts_TCONS_l2_00020645 range=chr4:90602647-90615273 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020645 range=chr4:90602647-90615273 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 90605647	 90607263	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51394_PI429285431	1.1463566	A	1.6512617	A	0.704706731420855	0	lncRNA	54979-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00009673 range=chr16:31711933-31724238 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009673 range=chr16:31711933-31724238 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 31711933	 31714932	+	NA	NA	NA	NA	ZNF720	"hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20chr16:31724550-31734238"	NA	inter
CUST_18246_PI429285431	0.9064199	A	0.907029	A	0.999577893164489	0	lncRNA	19980-1_{1..934}	lnc-ZNF37A-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-ZNF37A-4:1	chr10	 38754897	 38755830	+	lnc-ZNF37A-4	lnc-ZNF37A-4:1	ENSG00000203496	RP11-291L22.4	NA	NA	NA	inter
CUST_8949_PI429285431	1.067683	A	2.2698436	A	0.434623895264564	0	lncRNA	10483-1_{1..3000}	lnc-ORMDL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ORMDL1-1:1	chr2	190730436	190733435	-	lnc-ORMDL1-1	lnc-ORMDL1-1:1	ENSG00000246348	ENST00000500441	PMS1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PMS1:range=chr2:190656536-1907421625'pad=0,hg19_refFlat_PMS1:range=chr2:190656536-1907421625'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.31;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70chr2:190720436-190742355"	NA	inner
CUST_20695_PI429285431	1.5653387	A	2.430562	A	0.548961432195813	0	lncRNA	22331-1_{1..318}	lnc-SLC5A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SLC5A1-1:1	chr22	 32539091	 32539408	+	lnc-SLC5A1-1	lnc-SLC5A1-1:1	ENSG00000239674.1	RP1-127L4.7	C22orf42	NA	chr22:32545519-32549165	inter
LNCA_21_P0009816	5.134742	P	5.5902586	P	0.729248996002876	0	lncRNA	CR627206	NA	CR627206	NA	Hs.143562	XLOC_013679	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013679), lincRNA [TCONS_00027883]"	chr20:22257303-22257244	hs|20p11.22	Agilent_HUMAN_G3V2	CR627206	CR627206	chr20	 22257244	 22257303	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16004_PI429285431	2.7723575	A	2.361214	A	1.32973936628476	0	lncRNA	17701-1_{1..332}	lnc-HNRNPA3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HNRNPA3-3:1	chr2	177722578	177722909	+	lnc-HNRNPA3-3	lnc-HNRNPA3-3:1	XLOC_001768	linc-HNRNPA3-1	NA	NA	NA	inter
CUST_14195_PI429285431	0.9161247	A	0.9178211	A	0.998824836169361	0	lncRNA	15847-1_{1..1103}	lnc-ZNF516-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF516-5:2	chr18	 74350506	 74351608	-	lnc-ZNF516-5	lnc-ZNF516-5:2	XLOC_012893	linc-ZNF516-1	NA	NA	NA	inter
CUST_36497_PI429285431	3.4613845	P	2.8940983	A	1.48173371330807	0	lncRNA	37696-2_{3001..4144}	n344996|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_545|NULL|-1.3841100|-0.3622088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344996|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_545|NULL|-1.3841100|-0.3622088	chr8	 30047744	 30048887	+	NA	NA	NA	NA	DCTN6	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.72;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr8:30034744-30041155"	NA	inter
LNCA_21_P0007277	0.9462213	A	0.9402141	A	1.00417255470997	0	lncRNA	TCONS_00019478	NA	NA	NA	NA	XLOC_009281	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009281), lincRNA [TCONS_00019478]"	chr11:113886138-113886197	hs|11q23.2	Agilent_HUMAN_G3V2	TCONS_00019478	TCONS_00019478	chr11	113886138	113886197	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23913_PI429285431	0.91984695	A	0.9064226	A	1.00934847692536	0	lncRNA	25470-1_{1..556}	lnc-DHRS7B-5:20	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHRS7B-5:20	chr17	 20861615	 20862170	+	lnc-DHRS7B-5	lnc-DHRS7B-5:20	ENSG00000233098.3	RP11-344E13.3	NA	NA	NA	inter
CUST_6874_PI429285431	2.1206589	A	2.3940182	A	0.827390730590423	0	lncRNA	6824-1_{1..422}	"transcript_id ""ENST00000415820.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415820.1"" | genecode_v17"	chr21	 42931052	 42931473	-	ENSG00000232806.1	ENST00000415820.1	AP001610.9	AP001610.9-001	NA	NA	NA	inter
CUST_17059_PI429285431	0.9157666	A	1.072013	A	0.897356776699911	0	lncRNA	18768-1_{1..256}	lnc-C3orf79-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C3orf79-4:1	chr3	153074897	153075152	+	lnc-C3orf79-4	lnc-C3orf79-4:1	XLOC_002880	linc-C3orf79-4	NA	NA	NA	inter
CUST_33676_PI429285431	2.0337493	A	0.906815	A	2.18394163302752	0	lncRNA	35237-1_{1..1834}	n340444|AF131822|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2905|NULL|-1.1644400|-0.2049407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340444|AF131822|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2905|NULL|-1.1644400|-0.2049407	chr5	 43067347	 43069180	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49380_PI429285431	3.887701	P	3.7146926	P	1.12740697638163	0	lncRNA	53194-1_{1..323}	hg19_lincRNAsTranscripts_TCONS_l2_00023088 range=chr5:126383336-126409156 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023088 range=chr5:126383336-126409156 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	126383336	126383658	-	NA	NA	NA	NA	C5orf63	NA	chr5:126378250-126409184	inner
CUST_2197_PI429285431	1.3021427	A	0.91016406	A	1.31219182662963	0	lncRNA	2189-1_{1..445}	"transcript_id ""ENST00000503403.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503403.1"" | genecode_v17"	chr5	 72587417	 72587861	+	ENSG00000249743.1	ENST00000503403.1	RP11-60A8.1	RP11-60A8.1-004	NA	NA	NA	inter
CUST_51616_PI429285431	1.0966725	A	1.7150928	A	0.651383779556346	0	lncRNA	55185-1_{1..338}	hg19_lincRNAsTranscripts_TCONS_l2_00011221 range=chr17:40180989-40189820 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011221 range=chr17:40180989-40189820 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 40180989	 40181326	-	NA	NA	NA	NA	ZNF385C	NA	chr17:40177594-40190044	inner
CUST_18090_PI429285431	0.8981582	A	0.8987775	A	0.999570826072568	0	lncRNA	19825-1_{1..314}	lnc-COX10-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COX10-1:3	chr17	 14114605	 14114918	+	lnc-COX10-1	lnc-COX10-1:3	XLOC_012115	linc-HS3ST3B1	COX10	NA	chr17:14104605-14111996	inter
CUST_39534_PI429285431	9.311323	P	8.911121	P	1.31969267557157	0	lncRNA	40479-1_{1..832}	n387402|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011drg.1||0.7864590|-0.3083825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387402|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011drg.1||0.7864590|-0.3083825	chr6	 33367539	 33368370	+	NA	NA	NA	NA	KIFC1	"hg19_refFlat_RPL12:range=chr9:130210000-1302135965'pad=0,hg19_refFlat_RPL12:range=chr9:130210000-1302135965'pad=0 3'pad=0 strand=- repeatMasking=none,-99.50chr6:33357539-33377701"	NA	inner
CUST_37373_PI429285431	1.118021	A	0.93275064	A	1.13703003187179	0	lncRNA	38477-2_{3001..3822}	n345822|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1371|NULL|-1.3128200|-0.2814902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345822|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1371|NULL|-1.3128200|-0.2814902	chr12	 65177886	 65178707	+	NA	NA	NA	NA	TBC1D30	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30chr12:65218352-65274802"	NA	inner
CUST_23255_PI429285431	3.6049774	P	3.300705	P	1.23479573073125	0	lncRNA	24827-1_{1..313}	lnc-IFT46-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IFT46-1:3	chr11	118401219	118401531	-	lnc-IFT46-1	lnc-IFT46-1:3	ENSG00000255435.2	RP11-770J1.3	MLL	"hg19_refFlat_MLL:range=chr11:118307228-1183928875'pad=0,hg19_refFlat_MLL:range=chr11:118307228-1183928875'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90chr11:118391219-118397539"	NA	inner
CUST_36947_PI429285431	0.9238554	A	0.9083798	A	1.01078460763011	0	lncRNA	38101-2_{3001..6000}	n345417|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_966|NULL|-1.3111500|-0.4156690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345417|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_966|NULL|-1.3111500|-0.4156690	chr1	198774346	198777345	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70"	NA	inter
LNCA_21_P0006450	0.9265293	A	0.90953386	A	1.01185000281582	0	lncRNA	ENST00000448761	NA	NA	NA	NA	XLOC_008168	NA	ENST00000448761	NA	NA	"BROAD Institute lincRNA (XLOC_008168), lincRNA [TCONS_00017060]"	chrX:51245021-51244962	hs|Xp11.22	Agilent_HUMAN_G3V2	ENST00000448761	ENST00000448761	chrX	 51244962	 51245021	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51487_PI429285431	1.1862485	A	1.0888877	A	1.06981460169506	0	lncRNA	55063-1_{1..849}	hg19_lincRNAsTranscripts_TCONS_l2_00010192 range=chr16:56134754-56145894 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010192 range=chr16:56134754-56145894 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 56134754	 56135602	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33117_PI429285431	3.1294146	A	3.384059	A	0.838193709823609	0	lncRNA	34716-1_{1..2593}	n339805|Y10259|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2252|NULL|-0.7381700|-0.3318228	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339805|Y10259|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2252|NULL|-0.7381700|-0.3318228	chr18	 13882042	 13884634	-	NA	NA	NA	NA	MC2R	NA	chr18:13882043-13894626	inner
CUST_18151_PI429285431	0.9068552	A	0.90814567	A	0.999105914290931	0	lncRNA	19885-2_{3001..4499}	lnc-TMEM30B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM30B-1:1	chr14	 61792253	 61793751	-	lnc-TMEM30B-1	lnc-TMEM30B-1:1	ENSG00000247287	RP11-902B17.1	PRKCH	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60chr14:61788515-61799536"	NA	inner
CUST_15084_PI429285431	1.2833087	A	0.89243	A	1.31119176621231	0	lncRNA	16747-1_{1..509}	lnc-LRRC8D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-LRRC8D-1:1	chr1	 90255612	 90256120	+	lnc-LRRC8D-1	lnc-LRRC8D-1:1	XLOC_000292	linc-LRRC8D-1	NA	NA	NA	inter
CUST_43080_PI429285431	2.4272041	A	3.6707718	P	0.422326973986686	0	lncRNA	47249-1_{1..149}	ENST00000516751 ncrna:snRNA chromosome:GRCh37:6:131963958:131964106:-1 gene:ENSG00000252560 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516751 ncrna:snRNA chromosome:GRCh37:6:131963958:131964106:-1 gene:ENSG00000252560 gene_biotype:snRNA transcript_biotype:snRNA	chr6	131963958	131964106	-	ENSG00000252560	ENST00000516751	NA	NA	ENPP3	NA	chr6:131958442-131974106	inner
CUST_9134_PI429285431	1.339478	A	0.91678756	A	1.34042494488125	0	lncRNA	10653-1_{1..1273}	lnc-FAM168B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM168B-1:2	chr2	131593883	131595155	-	lnc-FAM168B-1	lnc-FAM168B-1:2	ENSG00000233221	AC133785.1	NA	NA	NA	inter
CUST_39350_PI429285431	9.228981	P	8.801766	P	1.34463536571762	0	lncRNA	40316-2_{3001..3702}	n386437|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010kzt.1||3.2204000|-0.3445733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386437|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010kzt.1||3.2204000|-0.3445733	chr7	 64501731	 64502432	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70"	NA	inter
LNCA_21_P0011202	0.9233773	A	0.9072745	A	1.01122413359595	0	lncRNA	ENST00000431656	NA	NA	NA	NA	XLOC_l2_003753	NA	ENST00000431656	THC2683167	NA	"BROAD Institute lincRNA (XLOC_l2_003753), lincRNA [TCONS_l2_00007418]"	chr13:62902907-62902966	hs|13q21.31	Agilent_HUMAN_G3V2	ENST00000431656	ENST00000431656	chr13	 62902907	 62902966	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23256_PI429285431	4.8474793	P	4.812466	P	1.02456626831969	0	lncRNA	24828-1_{1..461}	lnc-EIF2AK4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF2AK4-3:1	chr15	 40381411	 40381871	+	lnc-EIF2AK4-3	lnc-EIF2AK4-3:1	ENSG00000259409.1	RP11-521C20.3	BMF	NA	chr15:40380091-40391587	inner
LNCA_33_P3242578	2.4528708	A	0.9071897	A	2.91941862815368	0	lncRNA	XR_110231	XR_110231	XR_110231	100506731	Hs.546975	LOC100506731	uncharacterized LOC100506731	NA	THC2694804	NA	"PREDICTED: Homo sapiens hypothetical LOC100506731 (LOC100506731), miscRNA [XR_110231]"	chr14:85991599-85991540	hs|14q31.3	Agilent_HUMAN_G3V2	XR_110231	XR_110231	chr14	 85991540	 85991599	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11499_PI429285431	2.294303	A	2.2169387	A	1.05508870759427	0	lncRNA	13068-1_{1..1290}	lnc-PHF10-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHF10-1:2	chr6	170125513	170126802	-	lnc-PHF10-1	lnc-PHF10-1:2	XLOC_005940	linc-PHF10	PHF10	NA	chr6:170115513-170124106	inter
CUST_27990_PI429285431	0.9123883	A	0.909995	A	1.00166028589821	0	lncRNA	29598-1_{1..797}	n325243|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328224|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328224|-1.2978300|-0.4863058	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325243|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328224|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328224|-1.2978300|-0.4863058	chr2	 77752848	 77753644	+	NA	NA	NA	NA	LRRTM4	NA	chr2:77742848-77749502	inter
CUST_40365_PI429285431	0.921113	A	1.1244296	A	0.868551560250004	0	lncRNA	41164-1_{1..1142}	n409112|NR_033245|lncRNA|Homosapiens||RefGeneNoncode|NR_033245||0.6511000|-0.3880443	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409112|NR_033245|lncRNA|Homosapiens||RefGeneNoncode|NR_033245||0.6511000|-0.3880443	chr7	 64042987	 64044128	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23340_PI429285431	1.0425373	A	0.9092996	A	1.09675227579711	0	lncRNA	24909-1_{1..432}	lnc-FMN1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FMN1-3:2	chr15	 32961201	 32961632	-	lnc-FMN1-3	lnc-FMN1-3:2	ENSG00000241818.1	RP11-1000B6.2	SCG5	NA	chr15:32951201-32971293	inner
CUST_9749_PI429285431	4.3570724	P	4.8953767	P	0.688579769400936	0	lncRNA	11266-1_{1..1129}	lnc-TP53BP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TP53BP2-1:1	chr1	224159276	224160404	-	lnc-TP53BP2-1	lnc-TP53BP2-1:1	XLOC_001223	linc-TP53BP2-1	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	inter
CUST_41470_PI429285431	6.458957	P	6.6647253	P	0.867076806777243	0	lncRNA	42662-1_{1..97}	ENST00000385037 ncrna:miRNA chromosome:GRCh37:7:30329410:30329506:1 gene:ENSG00000207771 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385037 ncrna:miRNA chromosome:GRCh37:7:30329410:30329506:1 gene:ENSG00000207771 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 30329410	 30329506	+	ENSG00000207771	ENST00000385037	NA	NA	ZNRF2	NA	chr7:30323923-30339506	inner
LNCA_21_P0004970	0.92258626	A	0.9083502	A	1.00991653098733	0	lncRNA	TCONS_00012017	NA	NA	NA	NA	XLOC_005541	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005541), lincRNA [TCONS_00012017]"	chr6:167804917-167804976	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012017	TCONS_00012017	chr6	167804917	167804976	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49650_PI429285431	4.122843	P	4.0406423	P	1.0586316557926	0	lncRNA	53433-1_{1..1016}	hg19_lincRNAsTranscripts_TCONS_l2_00027391 range=chr7:65874130-65952977 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027391 range=chr7:65874130-65952977 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 65874130	 65875145	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40495_PI429285431	0.9019952	A	0.9072473	A	0.996366140200186	0	lncRNA	41260-1_{1..2092}	n409430|NR_033822_6|lncRNA|Homosapiens||RefGeneNoncode|NR_033822_6||-1.2235000|-0.3992686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409430|NR_033822_6|lncRNA|Homosapiens||RefGeneNoncode|NR_033822_6||-1.2235000|-0.3992686	chr6	  2106665	  2108756	+	NA	NA	NA	NA	GMDS	NA	chr6:2096665-2134499	inner
CUST_4543_PI429285431	4.6127663	P	4.299923	P	1.24215335652536	0	lncRNA	4491-1_{1..580}	"transcript_id ""ENST00000536100.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536100.1"" | genecode_v17"	chr12	133182400	133182979	-	ENSG00000204583.5	ENST00000536100.1	LRCOL1	LRCOL1-001	LOC100507055	NA	chr12:133179736-133187037	inner
CUST_38508_PI429285431	3.534043	A	2.1076088	A	2.68781566683798	0	lncRNA	39520-1_{1..3000}	n383077|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gty.2||2.8599000|-0.3875055	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383077|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gty.2||2.8599000|-0.3875055	chr17	 18414576	 18417575	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40171_PI429285431	7.5551767	P	7.3606033	P	1.14438571961147	0	lncRNA	41006-1_{1..2029}	n407912|NR_027479|lncRNA|Homosapiens||RefGeneNoncode|NR_027479||5.8158400|-0.3062904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407912|NR_027479|lncRNA|Homosapiens||RefGeneNoncode|NR_027479||5.8158400|-0.3062904	chr11	 78147015	 78149043	-	NA	NA	NA	NA	NARS2	NA	chr11:78147016-78285909	inner
CUST_24414_PI429285431	0.9153194	A	0.9857386	A	0.952361232806198	0	lncRNA	25967-1_{1..446}	lnc-C11orf82-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf82-2:1	chr11	 82527806	 82528251	+	lnc-C11orf82-2	lnc-C11orf82-2:1	ENSG00000255382.1	RP11-718B12.2	PRCP	NA	chr11:82535409-82538188	inter
CUST_14882_PI429285431	0.8983837	A	0.89551955	A	1.00198724946532	0	lncRNA	16547-1_{1..659}	lnc-NOVA1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOVA1-3:1	chr14	 27311771	 27312429	-	lnc-NOVA1-3	lnc-NOVA1-3:1	XLOC_010981	linc-NOVA1-4	NA	NA	NA	inter
CUST_49989_PI429285431	7.145559	P	7.4149213	P	0.829686202633304	0	lncRNA	53728-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026989 range=chr7:155029884-155045775 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026989 range=chr7:155029884-155045775 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	155029884	155032883	-	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60"	NA	inter
CUST_12524_PI429285431	0.9173422	A	0.91656494	A	1.00053890073241	0	lncRNA	14135-1_{1..260}	lnc-SH3BGRL2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SH3BGRL2-3:1	chr6	 79980626	 79980885	+	lnc-SH3BGRL2-3	lnc-SH3BGRL2-3:1	XLOC_005359	linc-SH3BGRL2-3	NA	NA	NA	inter
CUST_13585_PI429285431	0.91609865	A	0.9209524	A	0.996641290000482	0	lncRNA	15226-1_{1..1362}	lnc-NDFIP2-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDFIP2-8:1	chr13	 80937229	 80938590	+	lnc-NDFIP2-8	lnc-NDFIP2-8:1	XLOC_010453	linc-SLITRK5-10	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.84;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30"	NA	inter
CUST_2867_PI429285431	0.90429324	A	0.897385	A	1.0047999099165	0	lncRNA	2848-1_{1..419}	"transcript_id ""ENST00000447158.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447158.1"" | genecode_v17"	chr7	 68505139	 68505557	+	ENSG00000233689.1	ENST00000447158.1	RP11-123O1.1	RP11-123O1.1-001	NA	NA	NA	inter
LNCA_21_P0009744	0.92696637	A	0.91583645	A	1.0077445074275	0	lncRNA	TCONS_00027230	NA	NA	NA	NA	XLOC_013268	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013268), lincRNA [TCONS_00027230]"	chr19:22778053-22777994	hs|19p12	Agilent_HUMAN_G3V2	TCONS_00027230	TCONS_00027230	chr19	 22777994	 22778053	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46269_PI429285431	9.616989	P	10.457327	P	0.558512703257964	0	lncRNA	50508-1_{1..1728}	"gi|410170844|ref|XR_110305.3| PREDICTED: Homo sapiens uncharacterized LOC100506016 (LOC100506016), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410170844|ref|XR_110305.3| PREDICTED: Homo sapiens uncharacterized LOC100506016 (LOC100506016), misc_RNA"	Chr13	112809471	112811198	-	100506016	XR_110305.3	NA	NA	NA	NA	NA	inter
LNCA_21_P0006930	3.0095203	A	2.738663	A	1.20652457393596	0	lncRNA	TCONS_00018370	NA	NA	NA	NA	XLOC_008652	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008652), lincRNA [TCONS_00018370]"	chr10:125264174-125264233	hs|10q26.13	Agilent_HUMAN_G3V2	TCONS_00018370	TCONS_00018370	chr10	125264174	125264233	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007880	0.92985475	A	0.9194004	A	1.00727272194055	0	lncRNA	XR_110374	XR_110374	XR_110374	NA	NA	LOC100507195	uncharacterized LOC100507195	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507195 (LOC100507195), miscRNA [XR_110374]"	chr12:68726631-68726572	hs|12q15	Agilent_HUMAN_G3V2	XR_110374	XR_110374	chr12	 68726572	 68726631	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5279_PI429285431	0.91282606	A	0.9077974	A	1.00349168327407	0	lncRNA	5219-1_{1..852}	"transcript_id ""ENST00000563990.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563990.2"" | genecode_v17"	chr15	 86626576	 86627427	-	ENSG00000260477.2	ENST00000563990.2	RP11-553E24.2	RP11-553E24.2-001	NA	NA	NA	inter
CUST_288_PI429201921	0.91410065	A	0.9025738	A	1.00802180723638	0	lncRNA	203-2_{3001..6000}	TC08001782.hg.1	TCONS_l2_00028459-XLOC_l2_014099 // Broad TUCP // linc-DEFB105B-5 chr8:+:7170367-7177472 // chr8 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr8:+:7170367-7177472	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00028459-XLOC_l2_014099	linc-DEFB105B-5	chr8	  7170367	  7177472	+	NA	NA	NA	NA	NFYC	NA	chr1:41157242-41163260	Unknown
CUST_33666_PI429285431	6.1707277	P	6.0836954	P	1.06218296707603	0	lncRNA	35228-1_{1..1429}	n340430|BC008580|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2891|NULL|-1.1022600|-0.2408912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340430|BC008580|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2891|NULL|-1.1022600|-0.2408912	chr5	 37812778	 37814206	-	NA	NA	NA	NA	GDNF	"hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20chr5:37812779-37824191"	NA	inner
CUST_21942_PI429285431	0.90843135	A	2.8285632	A	0.264230360639519	0	lncRNA	23550-1_{1..605}	lnc-ADAM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAM2-1:1	chr8	 39778154	 39778758	-	lnc-ADAM2-1	lnc-ADAM2-1:1	ENSG00000254287.1	RP11-44K6.4	IDO1	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.90;hg19_refFlat_IDO1:range=chr8:39771442-397857045'pad=0,hg19_refFlat_IDO1:range=chr8:39771442-397857045'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90chr8:39771328-39786309"	NA	inner
CUST_451_PI429285431	7.373434	P	6.975101	P	1.31798413110359	0	lncRNA	443-1_{1..398}	"transcript_id ""ENST00000428508.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428508.1"" | genecode_v17"	chr1	149590752	149591149	-	ENSG00000229801.1	ENST00000428508.1	RP11-353N4.1	RP11-353N4.1-001	NA	NA	NA	inter
CUST_34209_PI429285431	7.3353624	P	7.1049066	P	1.17320554912304	0	lncRNA	35721-3_{6001..6837}	n341065|D87470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3531|NULL|3.3258200|-0.2234910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341065|D87470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3531|NULL|3.3258200|-0.2234910	chr11	 73117844	 73118680	-	NA	NA	NA	NA	FAM168A	NA	chr11:73117028-73309228	inner
CUST_31291_PI429285431	2.4741917	A	0.9287776	A	2.91887838047393	0	lncRNA	33079-1_{1..3000}	n337752|D87445|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|134|NULL|16.8115000|-0.3645683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337752|D87445|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|134|NULL|16.8115000|-0.3645683	chr15	 49280966	 49283965	-	NA	NA	NA	NA	SECISBP2L	NA	chr15:49280835-49338760	inner
CUST_47670_PI429285431	7.9357815	P	5.7159605	P	4.65835633216269	0	lncRNA	51652-1_{1..2606}	"gi|297747314|ref|NR_033714.1| Homo sapiens vesicle-associated membrane protein 7 (VAMP7), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|297747314|ref|NR_033714.1| Homo sapiens vesicle-associated membrane protein 7 (VAMP7), transcript variant 4, non-coding RNA"	ChrY	 59213949	 59216554	+	6845	NR_033714.1	NA	NA	NA	NA	NA	inter
CUST_42649_PI429285431	12.565115	P	12.352065	P	1.15913612380513	0	lncRNA	45541-1_{1..64}	ENST00000364953 ncrna:snoRNA chromosome:GRCh37:6:31803040:31803103:1 gene:ENSG00000201823 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364953 ncrna:snoRNA chromosome:GRCh37:6:31803040:31803103:1 gene:ENSG00000201823 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	 31803040	 31803103	+	ENSG00000201823	ENST00000364953	NA	NA	C6orf48	NA	chr6:31802693-31807541	inter
CUST_33466_PI429285431	0.9260243	A	0.9205854	A	1.00377707343133	0	lncRNA	35039-1_{1..993}	n340201|BC062457|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2662|NULL|-1.2342900|-0.3509294	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340201|BC062457|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2662|NULL|-1.2342900|-0.3509294	chr4	113242859	113243851	+	NA	NA	NA	NA	ALPK1	NA	chr4:113232859-113253823	inner
CUST_14582_PI429285431	0.9007869	A	1.2509792	A	0.784479525923512	0	lncRNA	16248-1_{1..2613}	lnc-CRYBB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBB1-1:1	chr22	 27067641	 27070253	-	lnc-CRYBB1-1	lnc-CRYBB1-1:1	XLOC_014327	linc-CRYBB1-1	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.31;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70"	NA	inter
CUST_20978_PI429285431	0.9857848	A	2.815987	A	0.281225203471603	0	lncRNA	22607-1_{1..704}	lnc-SCN1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SCN1A-1:1	chr2	166984281	166984984	-	lnc-SCN1A-1	lnc-SCN1A-1:1	ENSG00000249194.1	AC010127.4	SCN1A	NA	chr2:166974281-166994523	inner
LNCA_21_P0013356	0.9893601	A	1.0663177	A	0.948054827520116	0	lncRNA	TCONS_l2_00026970	NA	NA	NA	NA	XLOC_l2_014051	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014051), lincRNA [TCONS_l2_00026970]"	chr7:149714527-149714468	hs|7q36.1	Agilent_HUMAN_G3V2	TCONS_l2_00026970	TCONS_l2_00026970	chr7	149714468	149714527	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5532_PI429285431	1.5491124	A	2.4877348	A	0.52173083274637	0	lncRNA	5463-1_{1..571}	"transcript_id ""ENST00000573819.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000573819.1"" | genecode_v17"	chr16	 49488140	 49488710	+	ENSG00000263110.1	ENST00000573819.1	RP11-189E14.3	RP11-189E14.3-001	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	inter
CUST_50868_PI429285431	3.7407565	P	4.655044	P	0.530605854902079	0	lncRNA	54512-1_{1..673}	hg19_lincRNAsTranscripts_TCONS_l2_00004766 range=chr11:112160973-112164824 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004766 range=chr11:112160973-112164824 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	112160973	112161645	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43120_PI429285431	9.870153	P	9.967932	P	0.934470483273046	0	lncRNA	47935-1_{1..2608}	ENST00000587481 havana:3prime_overlapping_ncrna chromosome:GRCh37:16:67903863:67906470:1 gene:ENSG00000266937 gene_biotype:3prime_overlapping_ncrna transcript_biotype:3prime_overlapping_ncrna	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000587481 havana:3prime_overlapping_ncrna chromosome:GRCh37:16:67903863:67906470:1 gene:ENSG00000266937 gene_biotype:3prime_overlapping_ncrna transcript_biotype:3prime_overlapping_ncrna	chr16	 67903863	 67906470	+	ENSG00000266937	ENST00000587481	NA	NA	NUTF2	NA	chr16:67893863-67905219	inner
CUST_2888_PI429285431	6.099896	P	6.7439656	P	0.639905335196394	0	lncRNA	2869-1_{1..639}	"transcript_id ""ENST00000415536.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415536.1"" | genecode_v17"	chr7	 93652145	 93652783	+	ENSG00000236453.1	ENST00000415536.1	AC003092.1	AC003092.1-001	NA	NA	NA	inter
CUST_23004_PI429285431	4.8274093	P	5.0602384	P	0.85096452781824	0	lncRNA	24578-1_{1..407}	lnc-STUB1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STUB1-1:2	chr16	   742305	   742711	+	lnc-STUB1-1	lnc-STUB1-1:2	ENSG00000261659.2	LA16c-313D11.12	FBXL16	"hg19_refFlat_WDR24:range=chr16:734734-7396405'pad=0,hg19_refFlat_WDR24:range=chr16:734734-7396405'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50chr16:742500-752554"	NA	inner
CUST_33808_PI429285431	0.9872793	A	0.929717	A	1.04070580950528	0	lncRNA	35359-2_{3001..3168}	n340596|BC045192|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3058|NULL|-0.1231690|-0.4023262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n340596|BC045192|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3058|NULL|-0.1231690|-0.4023262	chr5	116754207	116754374	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80"	NA	inter
CUST_28898_PI429285431	3.4327493	P	4.006275	P	0.671972594063873	0	lncRNA	30614-1_{1..798}	n326321|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098154|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098154|-1.2124800|-0.2252871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326321|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098154|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098154|-1.2124800|-0.2252871	chr1	175629045	175629842	-	NA	NA	NA	NA	TNR	NA	chr1:175619045-175712752	inner
CUST_16953_PI429285431	0.9177055	A	0.91744566	A	1.0001801235837	0	lncRNA	18665-1_{1..1472}	lnc-ACP1-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACP1-9:1	chr2	   563842	   565313	+	lnc-ACP1-9	lnc-ACP1-9:1	XLOC_001308	linc-SNTG2-4	NA	NA	NA	inter
CUST_50905_PI429285431	4.3059645	P	4.0172524	P	1.2215493085441	0	lncRNA	54547-1_{1..303}	hg19_lincRNAsTranscripts_TCONS_l2_00005465 range=chr12:8346143-8347315 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005465 range=chr12:8346143-8347315 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	  8346143	  8346445	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28148_PI429285431	1.4662223	A	1.6211113	A	0.898201477251668	0	lncRNA	29773-1_{1..832}	n325424|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323608|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323608|-1.1933100|-0.3165498	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325424|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323608|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323608|-1.1933100|-0.3165498	chr2	 13780623	 13781454	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51936_PI429285431	1.404965	A	0.95338315	A	1.36753887967927	0	lncRNA	55477-1_{1..210}	hg19_lincRNAsTranscripts_TCONS_l2_00016154 range=chr20:10727801-10733826 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016154 range=chr20:10727801-10733826 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 10727801	 10728010	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14457_PI429285431	1.8139473	A	1.9495921	A	0.91026290857341	0	lncRNA	16120-1_{1..848}	lnc-MAGEA12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAGEA12-1:1	chrX	151889940	151890787	-	lnc-MAGEA12-1	lnc-MAGEA12-1:1	XLOC_008259	linc-CSAG2	MAGEA12	NA	chrX:151895973-151900140	inter
CUST_14748_PI429285431	2.9094663	A	2.795698	A	1.08205085082123	0	lncRNA	16412-1_{1..324}	lnc-ZNF33A-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF33A-4:2	chr10	 37921658	 37921981	+	lnc-ZNF33A-4	lnc-ZNF33A-4:2	XLOC_008456	linc-ZNF33A-3	NA	NA	NA	inter
CUST_18638_PI429285431	6.0569654	P	6.322812	P	0.831710528437214	0	lncRNA	20342-1_{1..2548}	lnc-CBWD5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBWD5-2:1	chr9	 70645993	 70648540	-	lnc-CBWD5-2	lnc-CBWD5-2:1	ENSG00000227003	AL591479.1	NA	NA	NA	inter
CUST_18134_PI429285431	2.6381211	A	2.777709	A	0.907778421518654	0	lncRNA	19869-1_{1..769}	lnc-ZNF644-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF644-1:1	chr1	 91317040	 91317808	-	lnc-ZNF644-1	lnc-ZNF644-1:1	XLOC_000915	linc-BARHL2	NA	NA	NA	inter
CUST_12709_PI429285431	1.8838725	A	2.493758	A	0.655248703909724	0	lncRNA	14327-1_{1..756}	lnc-ARHGAP26-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGAP26-2:1	chr5	142120728	142121483	+	lnc-ARHGAP26-2	lnc-ARHGAP26-2:1	XLOC_004590	linc-ARHGAP26-2	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30"	NA	inter
CUST_6619_PI429285431	3.8850493	P	4.062356	P	0.884352412423376	0	lncRNA	6566-1_{1..570}	"transcript_id ""ENST00000597980.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597980.1"" | genecode_v17"	chr19	 58917926	 58918495	-	ENSG00000232098.2	ENST00000597980.1	CTD-2619J13.14	CTD-2619J13.14-002	ZNF584	NA	chr19:58920063-58929694	inter
CUST_16658_PI429285431	7.081583	P	7.6606245	P	0.66940837227344	0	lncRNA	18360-1_{1..1647}	lnc-RAB30-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB30-2:1	chr11	 82808177	 82809823	-	lnc-RAB30-2	lnc-RAB30-2:1	XLOC_009517	linc-RAB30	NA	NA	NA	inter
CUST_1917_PI429285431	1.0229049	A	0.9204035	A	1.07363335638785	0	lncRNA	1908-1_{1..539}	"transcript_id ""ENST00000515860.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515860.1"" | genecode_v17"	chr4	139346677	139347215	+	ENSG00000249381.1	ENST00000515860.1	LINC00500	LINC00500-001	NA	NA	NA	inter
CUST_43692_PI429285431	0.92778575	A	0.91704553	A	1.00747233279058	0	lncRNA	48442-1_{1..1156}	"gi|392494076|ref|NR_052021.1| Homo sapiens protein tyrosine phosphatase, receptor type, C (PTPRC), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392494076|ref|NR_052021.1| Homo sapiens protein tyrosine phosphatase, receptor type, C (PTPRC), transcript variant 4, non-coding RNA"	NW_003315907.1	   280373	   281528	+	5788	NR_052021.1	NA	NA	NA	NA	NA	Unknown
CUST_40224_PI429285431	4.3646827	P	3.7490973	P	1.53217958097135	0	lncRNA	41046-1_{1..1556}	n408056|NR_027868|lncRNA|Homosapiens||RefGeneNoncode|NR_027868||4.2442200|-0.3464170	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408056|NR_027868|lncRNA|Homosapiens||RefGeneNoncode|NR_027868||4.2442200|-0.3464170	chr3	 33840065	 33841620	+	NA	NA	NA	NA	PDCD6IP	NA	chr3:33840066-33878756	inner
CUST_29340_PI429285431	3.3047833	P	3.9450357	P	0.641600690697589	0	lncRNA	31092-1_{1..825}	n332581|AK311114|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000429980|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000429980|2.6604100|-0.1472071	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332581|AK311114|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000429980|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000429980|2.6604100|-0.1472071	chr6	136686990	136687814	-	NA	NA	NA	NA	MAP7	NA	chr6:136676990-136857798	inner
CUST_12488_PI429285431	1.8190883	A	1.8017582	A	1.0120847475059	0	lncRNA	14099-1_{1..259}	lnc-RHOXF1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RHOXF1-1:3	chrX	119253450	119253708	-	lnc-RHOXF1-1	lnc-RHOXF1-1:3	XLOC_008222	linc-RHOXF1-1	RHOXF1	NA	chrX:119243450-119249847	inter
CUST_4805_PI429285431	3.951091	P	3.8176787	P	1.09688501662589	0	lncRNA	4749-1_{1..487}	"transcript_id ""ENST00000555693.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555693.1"" | genecode_v17"	chr14	 48865711	 48866197	-	ENSG00000258751.1	ENST00000555693.1	RP11-2G1.1	RP11-2G1.1-001	NA	NA	NA	inter
CUST_23584_PI429285431	0.8893033	A	0.8899129	A	0.99957754673725	0	lncRNA	25151-1_{1..556}	lnc-BAALC-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BAALC-2:1	chr8	104144821	104145376	+	lnc-BAALC-2	lnc-BAALC-2:1	ENSG00000250929.2	KB-1639H6.4	BAALC	NA	chr8:104152921-104155194	inter
CUST_8409_PI429285431	0.91672236	A	1.7351117	A	0.567074685414312	0	lncRNA	9986-1_{1..3000}	lnc-ASCC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASCC2-1:1	chr22	 30498120	 30501119	-	lnc-ASCC2-1	lnc-ASCC2-1:1	ENSG00000249836	ENST00000504478	HORMAD2	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0,hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-27.60chr22:30488120-30508134"	NA	inner
CUST_5408_PI429285431	3.242768	P	3.6805098	P	0.738289323102864	0	lncRNA	5341-1_{1..491}	"transcript_id ""ENST00000573315.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000573315.1"" | genecode_v17"	chr16	  3051301	  3051791	+	ENSG00000270168.1	ENST00000573315.1	LA16c-380H5.4	LA16c-380H5.4-001	NA	NA	NA	inter
CUST_36391_PI429285431	0.9106904	A	0.9122002	A	0.99895403379119	0	lncRNA	37609-1_{1..2911}	n344908|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_457|NULL|-1.3735900|-0.3172009	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344908|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_457|NULL|-1.3735900|-0.3172009	chr6	 72034855	 72037765	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13264_PI429285431	6.7777243	P	6.8565726	P	0.946813183813467	0	lncRNA	14895-1_{1..446}	lnc-TSHZ2-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSHZ2-3:7	chr20	 51314770	 51315215	+	lnc-TSHZ2-3	lnc-TSHZ2-3:7	XLOC_013567	linc-TSHZ2-1	NA	NA	NA	inter
CUST_32668_PI429285431	0.92524743	A	0.91728795	A	1.00553233829506	0	lncRNA	34319-1_{1..1713}	n339295|AK129939|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1727|NULL|-0.1660600|-0.3173317	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339295|AK129939|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1727|NULL|-0.1660600|-0.3173317	chr16	 77118306	 77120018	+	NA	NA	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50"	NA	inter
CUST_35633_PI429285431	14.300872	P	14.126474	P	1.12849341490555	0	lncRNA	37048-1_{1..630}	n342777|CR625571|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5280|NULL|1.3328900|-0.2710370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342777|CR625571|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5280|NULL|1.3328900|-0.2710370	chr11	 93268645	 93269274	+	NA	NA	NA	NA	C11orf75	NA	chr11:93258645-93276546	inner
CUST_21995_PI429285431	1.6811906	A	2.7078247	A	0.490854007787915	0	lncRNA	23604-1_{1..717}	lnc-KDM6A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KDM6A-1:2	chrX	 45192519	 45193235	+	lnc-KDM6A-1	lnc-KDM6A-1:2	ENSG00000229491.1	RP11-342D14.1	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30"	NA	inter
CUST_12413_PI429285431	0.90054154	A	2.5384288	A	0.321326693593468	0	lncRNA	14026-1_{1..555}	lnc-TPO-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TPO-3:1	chr2	  1583973	  1584527	+	lnc-TPO-3	lnc-TPO-3:1	XLOC_001315	linc-TTC15-7	NA	NA	NA	inter
CUST_5558_PI429285431	2.1729946	A	2.3285637	A	0.897778156420993	0	lncRNA	5488-1_{1..613}	"transcript_id ""ENST00000573934.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000573934.2"" | genecode_v17"	chr16	 55366267	 55366879	+	ENSG00000263207.2	ENST00000573934.2	RP11-26L20.4	RP11-26L20.4-001	IRX6	NA	chr16:55358471-55364672	inter
CUST_25924_PI429285431	1.7181927	A	0.92334396	A	1.73489546888514	0	lncRNA	27443-1_{1..491}	lnc-POLD3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POLD3-4:1	chr11	 74139378	 74139868	+	lnc-POLD3-4	lnc-POLD3-4:1	ENSG00000254631.1	RP11-702H23.4	NA	NA	NA	inter
CUST_35763_PI429285431	4.923991	P	5.3441987	P	0.747317027829017	0	lncRNA	37183-1_{1..3000}	n344453|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1|NULL|-1.4816200|-0.2113345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344453|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1|NULL|-1.4816200|-0.2113345	chr15	 57592515	 57595514	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50"	NA	inter
CUST_366_PI429285431	1.7150928	A	1.9067631	A	0.875591406283279	0	lncRNA	358-1_{1..491}	"transcript_id ""ENST00000448680.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448680.1"" | genecode_v17"	chr1	115642293	115642783	+	ENSG00000233730.1	ENST00000448680.1	RP4-666F24.3	RP4-666F24.3-001	NA	NA	NA	inter
CUST_33812_PI429285431	0.9921511	A	0.9303448	A	1.0437717784915	0	lncRNA	35362-1_{1..3000}	n340599|AK128461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3061|NULL|-1.0608200|-0.3419625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340599|AK128461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3061|NULL|-1.0608200|-0.3419625	chr5	118677270	118680269	+	NA	NA	NA	NA	TNFAIP8	NA	chr5:118667270-118690524	inner
CUST_25085_PI429285431	1.1601655	A	1.1292396	A	1.02166760626452	0	lncRNA	26622-1_{1..452}	lnc-N4BP2L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-N4BP2L2-1:1	chr13	 33738287	 33738738	-	lnc-N4BP2L2-1	lnc-N4BP2L2-1:1	ENSG00000230300.1	STARD13-IT1	STARD13	NA	chr13:33728287-33748546	inner
CUST_51802_PI429285431	5.819202	P	6.047826	P	0.853448497727446	0	lncRNA	55353-1_{1..1111}	hg19_lincRNAsTranscripts_TCONS_l2_00012390 range=chr19:20975142-20981831 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012390 range=chr19:20975142-20981831 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 20975142	 20976252	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1508_PI429285431	0.92141837	A	0.92569816	A	0.997037871413726	0	lncRNA	1495-1_{1..351}	"transcript_id ""ENST00000478814.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000478814.1"" | genecode_v17"	chr3	154544805	154545155	-	ENSG00000243969.1	ENST00000478814.1	RP11-439C8.1	RP11-439C8.1-001	NA	NA	NA	inter
CUST_13772_PI429285431	1.3641008	A	1.9011607	A	0.689173961724374	0	lncRNA	15415-1_{1..290}	lnc-HOMER1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOMER1-2:1	chr5	 78630855	 78631144	-	lnc-HOMER1-2	lnc-HOMER1-2:1	XLOC_004900	linc-DMGDH-2	JMY	NA	chr5:78620855-78623038	inter
CUST_39126_PI429285431	0.93321586	A	1.035288	A	0.931693840058829	0	lncRNA	40102-1_{1..2638}	n385715|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004cgh.1||-0.3541960|-0.1536142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n385715|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004cgh.1||-0.3541960|-0.1536142	chr9	138466770	138469407	+	NA	NA	NA	NA	GLT6D1	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20chr9:138479852-138488958"	NA	inter
CUST_9502_PI429285431	0.9207524	A	0.9196664	A	1.00075304123137	0	lncRNA	11011-1_{1..520}	lnc-FAM194B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM194B-1:1	chr13	 46256437	 46256956	-	lnc-FAM194B-1	lnc-FAM194B-1:1	XLOC_010594	linc-FAM194B	SPERT	NA	chr13:46246437-46266554	inter
CUST_3453_PI429285431	0.89873713	A	1.3015057	A	0.756405327710192	0	lncRNA	3424-1_{1..662}	"transcript_id ""ENST00000591257.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591257.1"" | genecode_v17"	chr9	 84888374	 84889035	+	ENSG00000228430.4	ENST00000591257.1	RP11-15B24.5	RP11-15B24.5-014	NA	NA	NA	inter
CUST_13674_PI429285431	2.2326715	A	2.6482542	A	0.749716625290608	0	lncRNA	15311-1_{1..306}	lnc-PRPF4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRPF4-1:1	chr9	116072658	116072963	+	lnc-PRPF4-1	lnc-PRPF4-1:1	XLOC_007524	linc-BSPRY	WDR31	NA	chr9:116077930-116082854	inter
CUST_36255_PI429285431	3.772626	P	3.9847512	P	0.863264639468387	0	lncRNA	37497-1_{1..850}	n344790|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_339|NULL|-1.3409100|-0.3664062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344790|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_339|NULL|-1.3409100|-0.3664062	chrX	 13284166	 13285015	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007922	0.9707656	A	0.92225844	A	1.0341942293983	0	lncRNA	ENST00000455848	NA	NA	NA	NA	XLOC_010293	NA	ENST00000455848	NA	NA	"BROAD Institute lincRNA (XLOC_010293), lincRNA [TCONS_00021527]"	chr13:20677267-20677326	hs|13q12.11	Agilent_HUMAN_G3V2	ENST00000455848	ENST00000455848	chr13	 20677267	 20677326	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15576_PI429285431	0.90755624	A	1.1016097	A	0.874146227755057	0	lncRNA	17260-1_{1..646}	lnc-KITLG-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KITLG-2:2	chr12	 89177052	 89177697	-	lnc-KITLG-2	lnc-KITLG-2:2	XLOC_010146	linc-KITLG-1	NA	NA	NA	inter
CUST_28783_PI429285431	0.92458755	A	0.9174591	A	1.00495329221118	0	lncRNA	30490-1_{1..597}	n326189|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000095276|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000095276|-1.1463900|-0.3613792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326189|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000095276|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000095276|-1.1463900|-0.3613792	chr1	229793660	229794256	-	NA	NA	NA	NA	URB2	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-21.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10chr1:229783660-229795946"	NA	inner
CUST_14029_PI429285431	0.9229166	A	0.92263055	A	1.00019829440874	0	lncRNA	15676-2_{3001..4030}	lnc-C16orf78-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C16orf78-2:2	chr16	 49493685	 49494714	+	lnc-C16orf78-2	lnc-C16orf78-2:2	XLOC_011715	linc-TMEM188	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	inter
CUST_45811_PI429285431	2.1901393	A	2.4825087	A	0.816559885350812	0	lncRNA	50148-1_{1..3000}	"gi|387849355|ref|NR_049731.1| Homo sapiens membrane-spanning 4-domains, subfamily A, member 14 (MS4A14), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387849355|ref|NR_049731.1| Homo sapiens membrane-spanning 4-domains, subfamily A, member 14 (MS4A14), transcript variant 5, non-coding RNA"	Chr11	 60163487	 60166486	+	84689	NR_049731.1	NA	NA	NA	NA	NA	inter
CUST_6569_PI429285431	0.90854883	A	0.9038367	A	1.003271539466	0	lncRNA	6518-1_{1..332}	"transcript_id ""ENST00000597886.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597886.1"" | genecode_v17"	chr19	 52645879	 52646210	+	ENSG00000268458.1	ENST00000597886.1	CTC-471J1.9	CTC-471J1.9-001	ZNF836	NA	chr19:52645879-52657409	inter
CUST_18517_PI429285431	2.1411579	A	2.5670295	A	0.74438887531804	0	lncRNA	20231-1_{1..1583}	lnc-ZNF705A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF705A-3:1	chr12	  8449260	  8450842	+	lnc-ZNF705A-3	lnc-ZNF705A-3:1	ENSG00000250937	RP11-90D4.1	NA	NA	NA	inter
CUST_8169_PI429285431	0.9056699	A	0.8993231	A	1.00440895750441	0	lncRNA	9771-1_{1..1762}	lnc-RDH10-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RDH10-4:1	chr8	 74458338	 74460099	+	lnc-RDH10-4	lnc-RDH10-4:1	ENSG00000251625	ENST00000505031	STAU2	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70chr8:74448338-74469905"	NA	inner
CUST_18281_PI429285431	0.9143767	A	0.9196262	A	0.996367935835595	0	lncRNA	20012-1_{1..892}	lnc-TMEM75-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM75-2:4	chr8	129573316	129574207	-	lnc-TMEM75-2	lnc-TMEM75-2:4	ENSG00000253984	CTD-3056O22.1	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-61.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40"	NA	inter
CUST_26818_PI429285431	0.9303988	A	0.9160221	A	1.01001498671095	0	lncRNA	28331-1_{1..835}	n323887|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056247|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056247|0.3657410|-0.3702121	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323887|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056247|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056247|0.3657410|-0.3702121	chrX	 41019935	 41020769	+	NA	NA	NA	NA	USP9X	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50chrX:41009935-41030975"	NA	inner
CUST_44636_PI429285431	7.1984243	P	8.12093	P	0.527591892503528	0	lncRNA	49201-1_{1..1778}	"gi|365906280|ref|NR_045724.1| Homo sapiens clathrin, light chain B (CLTB), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|365906280|ref|NR_045724.1| Homo sapiens clathrin, light chain B (CLTB), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_045724.1	NA	NA	NA	NA	NA	Unknown
CUST_11324_PI429285431	0.91353047	A	0.9079444	A	1.00387947442583	0	lncRNA	12887-1_{1..479}	lnc-RWDD3-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RWDD3-7:1	chr1	 96488089	 96488567	+	lnc-RWDD3-7	lnc-RWDD3-7:1	XLOC_000312	linc-PTBP2-2	NA	NA	NA	inter
CUST_43311_PI429285431	7.368311	P	7.8917217	P	0.695725111795235	0	lncRNA	48142-1_{1..2036}	ENST00000589524 havana:lincRNA chromosome:GRCh37:19:36440386:36442421:1 gene:ENSG00000267307 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000589524 havana:lincRNA chromosome:GRCh37:19:36440386:36442421:1 gene:ENSG00000267307 gene_biotype:lincRNA transcript_biotype:lincRNA	chr19	 36440386	 36442421	+	ENSG00000267307	ENST00000589524	NA	NA	LRFN3	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr19:36430386-36436097"	NA	inter
CUST_9523_PI429285431	0.90652806	A	0.9116861	A	0.996431102823367	0	lncRNA	11031-1_{1..702}	lnc-C5orf64-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf64-1:1	chr5	 61086489	 61087190	+	lnc-C5orf64-1	lnc-C5orf64-1:1	XLOC_004405	linc-KIF2A-2	NA	NA	NA	inter
CUST_19240_PI429285431	0.9136404	A	0.9129728	A	1.00046285214075	0	lncRNA	20909-1_{1..380}	lnc-DCT-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-DCT-4:2	chr13	 93372161	 93372540	-	lnc-DCT-4	lnc-DCT-4:2	ENSG00000235984.1	GPC5-AS1	GPC5	NA	chr13:93362161-93382228	inner
CUST_35995_PI429285431	2.354378	A	1.8895617	A	1.38014160720772	0	lncRNA	37331-1_{1..2770}	n344606|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_154|NULL|-1.6767100|-0.2736037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344606|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_154|NULL|-1.6767100|-0.2736037	chr1	177975294	177978063	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30911_PI429285431	6.679232	P	6.653393	P	1.01807158000025	0	lncRNA	32699-1_{1..234}	n336955|BC103825|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000337377|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000337377|-0.9621240|-0.1175293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336955|BC103825|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000337377|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000337377|-0.9621240|-0.1175293	chr1	 32645917	 32646150	+	NA	NA	NA	NA	KPNA6	NA	chr1:32635917-32642169	inner
CUST_1625_PI429285431	7.7937613	P	7.233265	P	1.47477646633434	0	lncRNA	1611-1_{1..2131}	"transcript_id ""ENST00000429897.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429897.1"" | genecode_v17"	chr3	195384936	195387066	+	ENSG00000242086.3	ENST00000429897.1	AC069513.3	AC069513.3-040	NA	NA	NA	inter
CUST_25077_PI429285431	4.980153	P	4.961028	P	1.01334469598294	0	lncRNA	26614-1_{1..843}	lnc-CXXC11-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CXXC11-4:1	chr2	242908078	242908920	+	lnc-CXXC11-4	lnc-CXXC11-4:1	ENSG00000233806.2	AC131097.3	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80"	NA	inter
CUST_50071_PI429285431	1.6812848	A	1.8755053	A	0.874045022074796	0	lncRNA	53804-3_{6001..7374}	hg19_lincRNAsTranscripts_TCONS_l2_00027829 range=chr8:69956047-69965108 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027829 range=chr8:69956047-69965108 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 69962047	 69963420	+	NA	NA	NA	NA	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30"	NA	inter
CUST_22380_PI429285431	0.9234637	A	0.90431297	A	1.01336276881939	0	lncRNA	23971-3_{6001..7481}	lnc-ZNF862-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:7	chr7	149500360	149501840	+	lnc-ZNF862-1	lnc-ZNF862-1:7	ENSG00000197558.7	SSPO	SSPO	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00chr7:149484360-149506170"	NA	inner
CUST_37339_PI429285431	5.8454804	P	6.332368	P	0.713562844191231	0	lncRNA	38443-1_{1..1548}	n345781|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1330|NULL|-1.3340300|-0.2011540	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345781|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1330|NULL|-1.3340300|-0.2011540	chr17	 29036627	 29038174	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33124_PI429285431	0.91872287	A	0.90503925	A	1.00952988553105	0	lncRNA	34721-1_{1..1047}	n339812|BC039423|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2259|NULL|-0.9536920|-0.1526882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n339812|BC039423|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2259|NULL|-0.9536920|-0.1526882	chr4	  3675319	  3676365	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19358_PI429285431	1.0255692	A	1.0638583	A	0.973809108502671	0	lncRNA	21021-1_{1..1762}	lnc-ASPHD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASPHD1-1:1	chr16	 29939589	 29941350	+	lnc-ASPHD1-1	lnc-ASPHD1-1:1	ENSG00000247735.2	CTD-2574D22.2	KCTD13	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40chr16:29929589-29937545"	NA	inter
CUST_8079_PI429285431	0.89566463	A	1.9436026	A	0.483658959721666	0	lncRNA	9685-1_{1..1882}	lnc-ITPA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITPA-1:1	chr20	  3126886	  3128767	+	lnc-ITPA-1	lnc-ITPA-1:1	ENSG00000250798	ENST00000502279	UBOX5	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.62;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FASTKD5:range=chr20:3127422-31297165'pad=0,hg19_refFlat_FASTKD5:range=chr20:3127422-31297165'pad=0 3'pad=0 strand=- repeatMasking=none,-99.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50chr20:3116886-3138509"	NA	inner
CUST_18723_PI429285431	1.0265529	A	1.0397072	A	0.990923575733663	0	lncRNA	20421-1_{1..2741}	lnc-POTEM-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-POTEM-3:1	chr14	 19940995	 19943735	-	lnc-POTEM-3	lnc-POTEM-3:1	ENSG00000249549	AL589182.1	NA	NA	NA	inter
CUST_50248_PI429285431	4.464004	P	4.757215	P	0.816083681874586	0	lncRNA	53971-2_{3001..4405}	hg19_lincRNAsTranscripts_TCONS_l2_00029345 range=chr9:68423755-68454933 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029345 range=chr9:68423755-68454933 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 68426755	 68428159	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14366_PI429285431	9.678058	P	8.822561	P	1.80938196927044	0	lncRNA	16026-1_{1..281}	lnc-PPIA-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPIA-1:4	chr7	 44889058	 44889338	+	lnc-PPIA-1	lnc-PPIA-1:4	XLOC_006069	linc-CCM2-2	H2AFV	"hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00chr7:44879058-44887725"	NA	inter
CUST_35089_PI429285431	0.9025248	A	0.9061363	A	0.997499829602602	0	lncRNA	36496-1_{1..443}	n342051|CR625516|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4532|NULL|-0.9240190|-0.3210840	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342051|CR625516|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4532|NULL|-0.9240190|-0.3210840	chr6	 81150446	 81150888	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51280_PI429285431	5.222687	P	3.457528	P	3.3991145936968	0	lncRNA	54886-1_{1..2910}	hg19_lincRNAsTranscripts_TCONS_l2_00008522 range=chr15:30766256-30782651 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008522 range=chr15:30766256-30782651 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 30766256	 30769165	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
LNCA_21_P0011326	10.440783	P	10.569431	P	0.914688235053466	0	lncRNA	TCONS_l2_00008703	NA	NA	NA	NA	XLOC_l2_004706	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004706), lincRNA [TCONS_l2_00008703]"	chr15:69355019-69355078	hs|15q23	Agilent_HUMAN_G3V2	TCONS_l2_00008703	TCONS_l2_00008703	chr15	 69355019	 69355078	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18388_PI429285431	0.9069188	A	1.1479236	A	0.846155781345235	0	lncRNA	20114-1_{1..2226}	lnc-FAM19A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM19A1-1:2	chr3	 67997565	 67999790	+	lnc-FAM19A1-1	lnc-FAM19A1-1:2	ENSG00000241316	RP11-81N13.1	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60"	NA	inter
CUST_44533_PI429285431	0.9062761	A	0.8984451	A	1.00544279404714	0	lncRNA	49128-1_{1..3000}	"gi|374429566|ref|NR_046243.1| Homo sapiens uncharacterized LOC642366 (LOC642366), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|374429566|ref|NR_046243.1| Homo sapiens uncharacterized LOC642366 (LOC642366), non-coding RNA"	Chr5	 50668570	 50671569	-	642366	NR_046243.1	NA	NA	NA	NA	NA	inter
CUST_33864_PI429285431	6.822238	P	7.543351	P	0.606629263643389	0	lncRNA	35408-1_{1..1932}	n340652|AK098252|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3114|NULL|-0.8733720|-0.1553050	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340652|AK098252|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3114|NULL|-0.8733720|-0.1553050	chr17	 38519772	 38521703	+	NA	NA	NA	NA	TOP2A	"hg19_refFlat_GJD3:range=chr17:38519183-385200675'pad=0,hg19_refFlat_GJD3:range=chr17:38519183-385200675'pad=0 3'pad=0 strand=- repeatMasking=none,-100.80chr17:38524203-38531704"	NA	inner
CUST_52058_PI429285431	3.1807296	P	3.0126638	A	1.1235511460022	0	lncRNA	55589-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017302 range=chr21:46490522-46493646 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017302 range=chr21:46490522-46493646 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 46490522	 46493521	-	NA	NA	NA	NA	ADARB1	NA	chr21:46494493-46503646	inter
CUST_27282_PI429285431	0.921861	A	0.9076606	A	1.00989156855425	0	lncRNA	28838-1_{1..3000}	n324431|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041713|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041713|0.3399850|-0.3513403	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324431|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041713|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041713|0.3399850|-0.3513403	chr6	108551529	108554528	+	NA	NA	NA	NA	SNX3	"hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr6:108541529-108582464"	NA	inner
CUST_4885_PI429285431	4.363383	P	4.7960043	P	0.740914359680864	0	lncRNA	4827-1_{1..397}	"transcript_id ""ENST00000555581.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555581.1"" | genecode_v17"	chr14	 72315323	 72315719	+	ENSG00000266869.1	ENST00000555581.1	RP6-114E22.1	RP6-114E22.1-001	NA	NA	NA	inter
CUST_29140_PI429285431	1.4991257	A	1.0307832	A	1.38351904147196	0	lncRNA	30881-1_{1..267}	n326648|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000020210|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000020210|-1.2265600|-0.4670171	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326648|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000020210|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000020210|-1.2265600|-0.4670171	chr1	 32589708	 32589974	+	NA	NA	NA	NA	KPNA6	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00chr1:32579708-32601730"	NA	inner
CUST_49947_PI429285431	5.1051974	P	4.7358007	P	1.29181251307732	0	lncRNA	53697-1_{1..1391}	hg19_lincRNAsTranscripts_TCONS_l2_00026199 range=chr7:128214819-128266709 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026199 range=chr7:128214819-128266709 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	128214819	128216209	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48909_PI429285431	0.91222435	A	0.9164096	A	0.997103209580278	0	lncRNA	52751-1_{1..2011}	hg19_lincRNAsTranscripts_TCONS_l2_00018805 range=chr3:125619686-125628844 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018805 range=chr3:125619686-125628844 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	125619686	125621696	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11050_PI429285431	1.8394978	A	2.61389	A	0.584634876070802	0	lncRNA	12597-1_{1..280}	lnc-AF165138.7.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AF165138.7.1-1:1	chr21	 16116775	 16117054	-	lnc-AF165138.7.1-1	lnc-AF165138.7.1-1:1	XLOC_014002	linc-SAMSN1-5	NA	NA	NA	inter
CUST_5491_PI429285431	0.8981096	A	0.8966399	A	1.00101923748112	0	lncRNA	5424-1_{1..3000}	"transcript_id ""ENST00000565549.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565549.1"" | genecode_v17"	chr16	 32465933	 32468932	-	ENSG00000261541.1	ENST00000565549.1	RP11-626K17.3	RP11-626K17.3-001	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20"	NA	inter
CUST_46736_PI429285431	1.3380493	A	1.2941035	A	1.03092958750947	0	lncRNA	50888-1_{1..2768}	"gi|117940057|ref|NR_002710.2| Homo sapiens arachidonate 12-lipoxygenase pseudogene 2 (ALOX12P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|117940057|ref|NR_002710.2| Homo sapiens arachidonate 12-lipoxygenase pseudogene 2 (ALOX12P2), non-coding RNA"	Chr17	  6756895	  6759662	+	245	NR_002710.2	NA	NA	NA	NA	NA	inter
CUST_21852_PI429285431	0.906795	A	1.521677	A	0.652983299757261	0	lncRNA	23462-1_{1..561}	lnc-TMEM41B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TMEM41B-1:1	chr11	  9266878	  9267438	-	lnc-TMEM41B-1	lnc-TMEM41B-1:1	ENSG00000255097.1	RP11-5L12.1	DENND5A	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50chr11:9256878-9277056"	NA	inner
CUST_45262_PI429285431	8.396447	P	8.000177	P	1.31610080990496	0	lncRNA	49714-1_{1..1158}	"gi|225903440|ref|NR_027427.1| Homo sapiens TatD DNase domain containing 1 (TATDN1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225903440|ref|NR_027427.1| Homo sapiens TatD DNase domain containing 1 (TATDN1), transcript variant 3, non-coding RNA"	Chr8	125500735	125501892	-	83940	NR_027427.1	NA	NA	NA	NA	NA	inter
CUST_14091_PI429285431	8.867222	P	9.015646	P	0.902235526520965	0	lncRNA	15736-1_{1..535}	lnc-VSTM2B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VSTM2B-1:2	chr19	 30016970	 30017504	+	lnc-VSTM2B-1	lnc-VSTM2B-1:2	XLOC_013032	linc-VSTM2B-1	VSTM2B	NA	chr19:30017491-30027286	inter
CUST_46885_PI429285431	15.544842	P	15.341801	P	1.15112220464445	0	lncRNA	51009-1_{1..1312}	"gi|310832421|ref|NR_037149.1| Homo sapiens NME1-NME2 readthrough (NME1-NME2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|310832421|ref|NR_037149.1| Homo sapiens NME1-NME2 readthrough (NME1-NME2), transcript variant 2, non-coding RNA"	Chr17	 49230897	 49232208	+	654364	NR_037149.1	NA	NA	NA	NA	NA	inter
CUST_41361_PI429285431	11.886153	P	11.54151	P	1.26983671806196	0	lncRNA	42437-1_{1..75}	ENST00000385213 ncrna:miRNA chromosome:GRCh37:16:67236224:67236298:-1 gene:ENSG00000207948 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385213 ncrna:miRNA chromosome:GRCh37:16:67236224:67236298:-1 gene:ENSG00000207948 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 67236224	 67236298	-	ENSG00000207948	ENST00000385213	NA	NA	LRRC29	NA	chr16:67241042-67246298	inter
CUST_47249_PI429285431	0.9088566	A	0.90206814	A	1.00471648969692	0	lncRNA	51321-2_{3001..5111}	"gi|222418605|ref|NR_026713.1| Homo sapiens family with sequence similarity 182, member A (FAM182A), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ncbi,"	">gi|222418605|ref|NR_026713.1| Homo sapiens family with sequence similarity 182, member A (FAM182A), non-coding RNA"	Chr20	 26038250	 26040360	+	284800	NR_026713.1	NA	NA	NA	NA	NA	inter
CUST_51032_PI429285431	0.91588855	A	0.9048139	A	1.00770590122836	0	lncRNA	54674-1_{1..2570}	hg19_lincRNAsTranscripts_TCONS_l2_00007057 range=chr13:19865973-19907716 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007057 range=chr13:19865973-19907716 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 19865973	 19868542	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12699_PI429285431	0.9071294	A	1.6857227	A	0.582934906981542	0	lncRNA	14316-1_{1..308}	lnc-ASCC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASCC3-1:1	chr6	102580356	102580663	-	lnc-ASCC3-1	lnc-ASCC3-1:1	XLOC_005791	linc-ASCC3-1	NA	NA	NA	inter
CUST_4120_PI429285431	10.573012	P	10.409018	P	1.12038455463612	0	lncRNA	4080-1_{1..569}	"transcript_id ""ENST00000441638.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441638.1"" | genecode_v17"	chr11	131104433	131105001	+	ENSG00000237612.1	ENST00000441638.1	AP002856.7	AP002856.7-001	NA	NA	NA	inter
CUST_25081_PI429285431	1.4053894	A	1.1016289	A	1.23435767570934	0	lncRNA	26617-1_{1..856}	lnc-SRPK2-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRPK2-4:4	chr7	104444403	104445258	-	lnc-SRPK2-4	lnc-SRPK2-4:4	ENSG00000226869.2	RP11-203P23.1	LHFPL3	NA	chr7:104434403-104454533	inner
CUST_38728_PI429285431	8.818287	P	9.172966	P	0.782043628670911	0	lncRNA	39723-1_{1..1803}	n384228|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bzf.3||1.7279700|-0.2775177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n384228|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bzf.3||1.7279700|-0.2775177	chr3	 14986197	 14987999	-	NA	NA	NA	NA	NR2C2	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10chr3:14989236-14998955"	NA	inter
CUST_51272_PI429285431	7.022171	P	7.478547	P	0.728814718527838	0	lncRNA	54878-1_{1..303}	hg19_lincRNAsTranscripts_TCONS_l2_00008512 range=chr15:29963428-29969638 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008512 range=chr15:29963428-29969638 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 29963428	 29963730	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00322743	1.9092586	A	2.269726	A	0.778912189150124	0	lncRNA	XR_110481	XR_110481	XR_110481	NA	Hs.526415	LOC100506029	uncharacterized LOC100506029	NA	THC2495586	NA	"PREDICTED: Homo sapiens hypothetical LOC100506029 (LOC100506029), miscRNA [XR_110481]"	chr1:101548868-101548927	hs|1p21.2	Agilent_HUMAN_G3V2	XR_110481	XR_110481	chr1	101548868	101548927	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33059_PI429285431	3.9149227	P	3.2708218	P	1.56276505404535	0	lncRNA	34670-1_{1..3000}	n339748|BC042533|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2194|NULL|2.1204800|-0.2451787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339748|BC042533|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2194|NULL|2.1204800|-0.2451787	chr3	194429149	194432148	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010783	0.9390114	A	0.92227817	A	1.01166611566541	0	lncRNA	ENST00000420760	NA	NA	NA	NA	XLOC_l2_001222	NA	ENST00000420760	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001222), lincRNA [TCONS_l2_00002729]"	chr1:182159314-182159255	hs|1q25.3	Agilent_HUMAN_G3V2	ENST00000420760	ENST00000420760	chr1	182159255	182159314	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45922_PI429285431	0.9129188	A	1.9161377	A	0.498885657876697	0	lncRNA	50231-1_{1..3000}	"gi|384871618|ref|NR_047591.1| Homo sapiens transmembrane protein 218 (TMEM218), transcript variant 17, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384871618|ref|NR_047591.1| Homo sapiens transmembrane protein 218 (TMEM218), transcript variant 17, non-coding RNA"	Chr11	124964266	124967265	-	219854	NR_047591.1	NA	NA	NA	NA	NA	inter
CUST_22211_PI429285431	0.92146564	A	0.9227129	A	0.999135838850072	0	lncRNA	23810-1_{1..197}	lnc-C11orf58-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf58-1:1	chr11	 16052969	 16053165	+	lnc-C11orf58-1	lnc-C11orf58-1:1	ENSG00000254878.1	CTD-3096P4.1	SOX6	NA	chr11:16042969-16063061	inner
LNCA_21_P0003618	0.9512878	A	0.92440057	A	1.01881155686858	0	lncRNA	TCONS_00008095	NA	NA	NA	NA	XLOC_003561	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003561), lincRNA [TCONS_00008095]"	chr4:66744516-66744575	hs|4q13.2	Agilent_HUMAN_G3V2	TCONS_00008095	TCONS_00008095	chr4	 66744516	 66744575	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19021_PI429285431	5.0429387	P	4.306097	P	1.66652354465887	0	lncRNA	20711-1_{1..963}	lnc-FAM19A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM19A1-1:1	chr3	 67797195	 67798157	+	lnc-FAM19A1-1	lnc-FAM19A1-1:1	ENSG00000241316	RP11-81N13.1	NA	NA	NA	inter
CUST_5533_PI429285431	4.2150693	P	4.97016	P	0.59250913416939	0	lncRNA	5464-1_{1..2085}	"transcript_id ""ENST00000563124.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563124.1"" | genecode_v17"	chr16	 49954641	 49956725	-	ENSG00000261751.1	ENST00000563124.1	RP11-305A4.3	RP11-305A4.3-001	NA	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.30;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
LNCA_21_P0011932	0.9668287	A	0.9273632	A	1.02773299422716	0	lncRNA	TCONS_l2_00014693	NA	NA	NA	NA	XLOC_l2_008133	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008133), lincRNA [TCONS_l2_00014693]"	chr2:95425770-95425198	hs|2q11.1	Agilent_HUMAN_G3V2	TCONS_l2_00014693	TCONS_l2_00014693	chr2	 95425198	 95425770	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46508_PI429285431	4.945749	P	5.172505	P	0.854554257645815	0	lncRNA	50701-1_{1..3000}	"gi|380036035|ref|NR_024595.3| Homo sapiens DNM1 pseudogene 35 (DNM1P35), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|380036035|ref|NR_024595.3| Homo sapiens DNM1 pseudogene 35 (DNM1P35), non-coding RNA"	Chr15	 76020011	 76023010	-	100128285	NR_024595.3	NA	NA	NA	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30"	NA	inter
CUST_49354_PI429285431	2.0887864	A	1.545225	A	1.45756619040927	0	lncRNA	53167-1_{1..520}	hg19_lincRNAsTranscripts_TCONS_l2_00022430 range=chr5:88761965-88771325 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022430 range=chr5:88761965-88771325 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 88761965	 88762484	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32351_PI429285431	5.036128	P	5.573864	P	0.688851065104789	0	lncRNA	34031-1_{1..2725}	n338934|AK131287|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1361|NULL|-0.0620907|-0.1950736	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338934|AK131287|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1361|NULL|-0.0620907|-0.1950736	chr19	 54490740	 54493464	+	NA	NA	NA	NA	CACNG6	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-47.56;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20chr19:54495542-54503468"	NA	inner
CUST_1961_PI429285431	0.90578175	A	0.8969893	A	1.00611307094558	0	lncRNA	1954-1_{1..628}	"transcript_id ""ENST00000512831.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512831.1"" | genecode_v17"	chr4	163661820	163662447	+	ENSG00000248431.1	ENST00000512831.1	AC005150.1	AC005150.1-001	NA	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90"	NA	inter
CUST_39722_PI429285431	0.9193887	A	0.94353354	A	0.983403339861427	0	lncRNA	40653-3_{6001..6075}	n405658|NR_002824|lncRNA|Homosapiens||RefGeneNoncode|NR_002824||16.0397000|-0.2276221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405658|NR_002824|lncRNA|Homosapiens||RefGeneNoncode|NR_002824||16.0397000|-0.2276221	chr15	 23288264	 23288338	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6476_PI429285431	5.8791537	P	6.0945716	P	0.861296635045165	0	lncRNA	6417-1_{1..728}	"transcript_id ""ENST00000602468.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602468.1"" | genecode_v17"	chr19	 35890413	 35891140	+	ENSG00000205786.4	ENST00000602468.1	AC002511.1	AC002511.1-005	NA	NA	NA	inter
LNCA_21_P0008515	3.6739035	P	4.435404	P	0.58988249403526	0	lncRNA	ENST00000557723	NA	NA	NA	NA	XLOC_010856	NA	ENST00000557723	NA	NA	"BROAD Institute lincRNA (XLOC_010856), lincRNA [TCONS_00023006]"	chr14:66590483-66590542	hs|14q23.3	Agilent_HUMAN_G3V2	ENST00000557723	ENST00000557723	chr14	 66590483	 66590542	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_320_PI429201921	0.93094885	A	1.2444724	A	0.804674070656895	0	lncRNA	215-1_{1..3000}	TC13001141.hg.1	TCONS_l2_00007421-XLOC_l2_003764 // Broad TUCP // linc-C13orf34-9 chr13:+:67946518-67954108 // chr13 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00006899-XLOC_l2_003764 // Broad TUCP // linc-C13orf34-9 chr13:+:67949009-67954112 // chr13 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr13:+:67946518-67954108	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00007421-XLOC_l2_003764	linc-C13orf34-9	chr13	 67946518	 67954108	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5168_PI429285431	0.92280823	A	0.9273564	A	0.996852412859499	0	lncRNA	5109-1_{1..861}	"transcript_id ""ENST00000560705.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560705.1"" | genecode_v17"	chr15	 45997276	 45998136	+	ENSG00000259200.1	ENST00000560705.1	RP11-718O11.1	RP11-718O11.1-002	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70"	NA	inter
CUST_51586_PI429285431	9.077047	P	9.164705	P	0.941049162740697	0	lncRNA	55151-1_{1..1539}	hg19_lincRNAsTranscripts_TCONS_l2_00011143 range=chr17:20515855-20517923 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011143 range=chr17:20515855-20517923 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 20515855	 20517393	-	NA	NA	NA	NA	NA	"hg19_refFlat_DEF8:range=chr16:90021633-900323715'pad=0,hg19_refFlat_DEF8:range=chr16:90021633-900323715'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20;hg19_refFlat_DEF8:range=chr16:90015874-900323715'pad=0,hg19_refFlat_DEF8:range=chr16:90015874-900323715'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.50;hg19_refFlat_DEF8:range=chr16:90020661-900256435'pad=0,hg19_refFlat_DEF8:range=chr16:90020661-900256435'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.50;hg19_refFlat_DEF8:range=chr16:90020661-900323715'pad=0,hg19_refFlat_DEF8:range=chr16:90020661-900323715'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.50"	NA	inter
CUST_17865_PI429285431	6.568308	P	6.393311	P	1.12896205719309	0	lncRNA	19602-1_{1..1482}	lnc-BLCAP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BLCAP-1:1	chr20	 36137506	 36138987	-	lnc-BLCAP-1	lnc-BLCAP-1:1	XLOC_013732	linc-GHRH	BLCAP	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10chr20:36145819-36147759"	NA	inter
CUST_38671_PI429285431	1.0110033	A	1.7761898	A	0.588377303012105	0	lncRNA	39671-1_{1..1402}	n383969|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yjl.2||1.6231900|-0.3708522	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n383969|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yjl.2||1.6231900|-0.3708522	chr21	 15399741	 15401142	+	NA	NA	NA	NA	LIPI	NA	chr21:15481134-15526859	inner
CUST_34263_PI429285431	4.894602	P	5.5151987	P	0.650401865271001	0	lncRNA	35764-1_{1..1611}	n341121|AK097483|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3587|NULL|7.3195700|-0.1630887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341121|AK097483|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3587|NULL|7.3195700|-0.1630887	chr11	111746065	111747675	-	NA	NA	NA	NA	ALG9	NA	chr11:111736065-111742305	inner
CUST_5986_PI429285431	2.209208	A	2.663052	A	0.730094946926793	0	lncRNA	5913-1_{1..839}	"transcript_id ""ENST00000591481.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591481.1"" | genecode_v17"	chr17	 75524935	 75525773	+	ENSG00000267665.1	ENST00000591481.1	RP11-13K12.2	RP11-13K12.2-003	NA	NA	NA	inter
CUST_46921_PI429285431	11.988578	P	11.843465	P	1.10581726376372	0	lncRNA	51036-1_{1..1031}	"gi|356874781|ref|NR_045513.1| Homo sapiens 5', 3'-nucleotidase, cytosolic (NT5C), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|356874781|ref|NR_045513.1| Homo sapiens 5', 3'-nucleotidase, cytosolic (NT5C), transcript variant 3, non-coding RNA"	Chr17	 73126320	 73127350	-	30833	NR_045513.1	NA	NA	NA	NA	NA	inter
CUST_7349_PI429285431	2.342639	A	2.9013188	A	0.678923157313268	0	lncRNA	8996-1_{1..3000}	lnc-HES5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,UCSC,"	>lnc-HES5-1:2	chr1	  2488416	  2491415	-	lnc-HES5-1	lnc-HES5-1:2	ENSG00000238164	RP3-395M20.8	TNFRSF14	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20chr1:2487805-2495268"	NA	inner
CUST_5688_PI429285431	5.9674077	P	5.8528004	P	1.08268030102857	0	lncRNA	5612-1_{1..472}	"transcript_id ""ENST00000562040.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562040.1"" | genecode_v17"	chr16	 89050440	 89050911	+	ENSG00000259989.1	ENST00000562040.1	CTD-2555A7.1	CTD-2555A7.1-001	CBFA2T3	NA	chr16:89040440-89043504	inter
CUST_17313_PI429285431	3.970865	P	4.189659	P	0.85928344182622	0	lncRNA	19031-1_{1..466}	lnc-EFR3B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFR3B-2:1	chr2	 25431843	 25432308	+	lnc-EFR3B-2	lnc-EFR3B-2:1	XLOC_001399	linc-RAB10-2	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60"	NA	inter
CUST_43503_PI429285431	1.0061774	A	0.9420951	A	1.04541973553195	0	lncRNA	48294-1_{1..3000}	"gi|218563728|ref|NR_024602.1| Homo sapiens chloride channel accessory 4 (CLCA4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|218563728|ref|NR_024602.1| Homo sapiens chloride channel accessory 4 (CLCA4), transcript variant 2, non-coding RNA"	Chr1	 87012759	 87015758	+	22802	NR_024602.1	NA	NA	NA	NA	NA	inter
CUST_17775_PI429285431	0.99691457	A	1.2862077	A	0.818302900088111	0	lncRNA	19506-1_{1..2126}	lnc-RNASE1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RNASE1-1:2	chr14	 21343696	 21345821	-	lnc-RNASE1-1	lnc-RNASE1-1:2	XLOC_010966	linc-RNASE1	NA	NA	NA	inter
CUST_9795_PI429285431	4.54389	P	4.9152126	P	0.773073451728336	0	lncRNA	11312-1_{1..876}	lnc-AC016251.1-8:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC016251.1-8:9	chr15	 95870059	 95870934	-	lnc-AC016251.1-8	lnc-AC016251.1-8:9	XLOC_011592	linc-RGMA-7	NA	NA	NA	inter
CUST_14150_PI429285431	6.851921	P	7.3011403	P	0.732439092844699	0	lncRNA	15801-1_{1..2541}	lnc-ADSS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADSS-2:1	chr1	244401927	244404467	-	lnc-ADSS-2	lnc-ADSS-2:1	XLOC_001288	linc-AKT3-4	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50"	NA	inter
CUST_20350_PI429285431	5.649662	P	6.346531	P	0.61690959916016	0	lncRNA	21992-1_{1..289}	lnc-TRIM41-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM41-3:1	chr5	180621234	180621522	+	lnc-TRIM41-3	lnc-TRIM41-3:1	ENSG00000250222.1	CTC-338M12.5	TRIM7	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-62.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80chr5:180620924-180631429"	NA	inner
CUST_10546_PI429285431	0.9210514	A	0.9209333	A	1.0000818640327	0	lncRNA	12076-1_{1..572}	lnc-PPA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPA2-2:1	chr4	106473350	106473921	-	lnc-PPA2-2	lnc-PPA2-2:1	XLOC_004036	linc-PPA2-1	ARHGEF38	NA	chr4:106473777-106483512	inter
LNCA_21_P0007219	1.0366721	A	1.0643263	A	0.981014115373217	0	lncRNA	TCONS_00019322	NA	NA	NA	NA	XLOC_009167	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009167), lincRNA [TCONS_00019322]"	chr11:65220720-65220779	hs|11q13.1	Agilent_HUMAN_G3V2	TCONS_00019322	TCONS_00019322	chr11	 65220720	 65220779	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35630_PI429285431	3.5465817	P	2.0478697	A	2.82590310662459	0	lncRNA	37045-1_{1..882}	n342774|AB126080|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5277|NULL|0.9181290|-0.0878273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342774|AB126080|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5277|NULL|0.9181290|-0.0878273	chr11	 71293039	 71293920	-	NA	NA	NA	NA	KRTAP5-11	NA	chr11:71283039-71293921	inner
CUST_21589_PI429285431	5.622781	P	5.6711574	P	0.967023999558329	0	lncRNA	23203-1_{1..374}	lnc-NOM1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NOM1-4:1	chr7	156799571	156799944	+	lnc-NOM1-4	lnc-NOM1-4:1	ENSG00000235029.1	RP5-1121A15.4	MNX1	NA	chr7:156797547-156803347	inner
CUST_45362_PI429285431	0.93881285	A	0.917949	A	1.01456679537675	0	lncRNA	49799-1_{1..1675}	"gi|338827686|ref|NR_040076.1| Homo sapiens uncharacterized LOC100507244 (LOC100507244), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338827686|ref|NR_040076.1| Homo sapiens uncharacterized LOC100507244 (LOC100507244), non-coding RNA"	Chr9	 72768050	 72769724	-	100507244	NR_040076.1	NA	NA	NA	NA	NA	inter
CUST_38377_PI429285431	5.0036983	P	3.3935604	P	3.05281020682759	0	lncRNA	39417-1_{1..3000}	n382231|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ygz.1||-1.1538500|-0.2659347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382231|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ygz.1||-1.1538500|-0.2659347	chr14	100745712	100748711	+	NA	NA	NA	NA	SLC25A29	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.34;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-24.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60chr14:100757453-100759124"	NA	inter
CUST_27163_PI429285431	3.717411	P	4.425848	P	0.611982795278901	0	lncRNA	28702-1_{1..479}	n324291|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000105436|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000105436|-1.2657500|-0.3531221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324291|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000105436|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000105436|-1.2657500|-0.3531221	chr6	169428553	169429031	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5711_PI429285431	0.8996434	A	0.90396583	A	0.997008403601489	0	lncRNA	5635-1_{1..534}	"transcript_id ""ENST00000572821.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000572821.1"" | genecode_v17"	chr17	  3038263	  3038796	-	ENSG00000261848.1	ENST00000572821.1	CTD-2309O5.3	CTD-2309O5.3-001	OR1A2	NA	chr17:3057184-3090229	inter
CUST_52197_PI429285431	0.9221523	A	1.5264713	A	0.657781801700583	0	lncRNA	55713-1_{1..478}	hg19_lincRNAsTranscripts_TCONS_l2_00017675 range=chr22:25916254-25936523 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017675 range=chr22:25916254-25936523 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 25916254	 25916731	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6194_PI429285431	2.7520728	P	1.6774323	A	2.10619717079856	0	lncRNA	6120-1_{1..2558}	"transcript_id ""ENST00000382897.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000382897.2"" | genecode_v17"	chr18	 53670844	 53673401	-	ENSG00000206129.3	ENST00000382897.2	CTD-2008L17.2	CTD-2008L17.2-001	NA	NA	NA	inter
CUST_20258_PI429285431	0.8992718	A	0.9004704	A	0.999169538813305	0	lncRNA	21901-1_{1..779}	lnc-SOCS2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SOCS2-2:1	chr12	 94231067	 94231845	+	lnc-SOCS2-2	lnc-SOCS2-2:1	ENSG00000258303.1	RP11-887P2.6	CRADD	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00chr12:94221067-94241814"	NA	inner
CUST_28769_PI429285431	0.90343463	A	0.8995182	A	1.00271835044487	0	lncRNA	30477-1_{1..631}	n326175|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092703|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092703|-1.3136700|-0.3013204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326175|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092703|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092703|-1.3136700|-0.3013204	chr1	232876464	232877094	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28146_PI429285431	0.92536783	A	0.90881515	A	1.01153951587614	0	lncRNA	29772-1_{1..3000}	n325423|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323615|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323615|-1.0837300|-0.3726597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325423|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323615|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323615|-1.0837300|-0.3726597	chr2	 14286448	 14289447	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47520_PI429285431	5.665305	P	6.288884	P	0.64905876089497	0	lncRNA	51531-1_{1..2144}	"gi|304361766|ref|NR_036556.1| Homo sapiens ankyrin repeat domain 54 (ANKRD54), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|304361766|ref|NR_036556.1| Homo sapiens ankyrin repeat domain 54 (ANKRD54), transcript variant 2, non-coding RNA"	Chr22	 38226862	 38229005	-	129138	NR_036556.1	NA	NA	NA	NA	NA	inter
CUST_15836_PI429285431	0.92766345	A	0.91783494	A	1.00683586256936	0	lncRNA	17526-1_{1..1144}	lnc-CDR2L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDR2L-1:2	chr17	 72971261	 72972404	+	lnc-CDR2L-1	lnc-CDR2L-1:2	XLOC_012308	linc-CDR2L	C17orf28	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70chr17:72961261-72968900"	NA	inter
CUST_40469_PI429285431	3.3704505	P	3.3209016	P	1.03494126916052	0	lncRNA	41238-1_{1..590}	n409396|NR_033795|lncRNA|Homosapiens||RefGeneNoncode|NR_033795||4.7796000|-0.0475037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409396|NR_033795|lncRNA|Homosapiens||RefGeneNoncode|NR_033795||4.7796000|-0.0475037	chr17	  3143969	  3144558	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33581_PI429285431	4.9732237	P	5.0832996	P	0.926539315494243	0	lncRNA	35146-1_{1..404}	n340334|AF009258|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2795|NULL|-1.1047300|-0.2004624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340334|AF009258|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2795|NULL|-1.1047300|-0.2004624	chr5	  9236100	  9236503	+	NA	NA	NA	NA	SEMA5A	NA	chr5:9226100-9246505	inner
CUST_3759_PI429285431	2.7246354	A	2.6896431	A	1.02455135474861	0	lncRNA	3727-2_{3001..3287}	"transcript_id ""ENST00000439559.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000439559.2"" | genecode_v17"	chr10	 89105493	 89105779	+	ENSG00000224914.2	ENST00000439559.2	LINC00863	LINC00863-001	FAM22D	NA	chr10:89117477-89127639	inner
CUST_51692_PI429285431	5.2232814	P	5.573184	P	0.784637068946509	0	lncRNA	55254-1_{1..1075}	hg19_lincRNAsTranscripts_TCONS_l2_00011026 range=chr17:81054162-81055419 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011026 range=chr17:81054162-81055419 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 81054162	 81055236	+	NA	NA	NA	NA	METRNL	NA	chr17:81044162-81052592	inter
CUST_15133_PI429285431	0.94877326	A	0.9198513	A	1.02024946919109	0	lncRNA	16793-1_{1..230}	lnc-PSMG1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PSMG1-2:1	chr21	 40453980	 40454209	-	lnc-PSMG1-2	lnc-PSMG1-2:1	XLOC_014083	linc-ERG-8	NA	NA	NA	inter
CUST_27265_PI429285431	0.92403543	A	0.91234815	A	1.0081339071091	0	lncRNA	28818-1_{1..413}	n324411|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041902|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041902|-1.1100100|-0.2959189	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324411|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041902|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041902|-1.1100100|-0.2959189	chr6	114297854	114298266	-	NA	NA	NA	NA	HDAC2	NA	chr6:114287854-114292359	inter
CUST_30900_PI429285431	1.2035291	A	0.92659247	A	1.21161943919638	0	lncRNA	32688-1_{1..261}	n336932|AY962470|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000333393|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000333393|-1.3047100|-0.3034218	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336932|AY962470|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000333393|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000333393|-1.3047100|-0.3034218	chr3	145884654	145884914	-	NA	NA	NA	NA	PLOD2	NA	chr3:145874654-145879282	inter
CUST_30861_PI429285431	1.1028556	A	1.1047478	A	0.998689286641026	0	lncRNA	32649-1_{1..317}	n336858|AY566847|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331939_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331939_04|-1.1495800|-0.3394310	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336858|AY566847|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331939_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331939_04|-1.1495800|-0.3394310	chr6	  1143794	  1144110	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29235_PI429285431	6.1709123	P	6.508129	P	0.791566959630896	0	lncRNA	30986-1_{1..3000}	n326766|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007035|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007035|3.5330900|-0.1048308	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326766|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007035|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007035|3.5330900|-0.1048308	chr1	   131336	   134335	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42548_PI429285431	7.477184	P	7.397607	P	1.0567081669727	0	lncRNA	45358-1_{1..128}	ENST00000391277 ncrna:snoRNA chromosome:GRCh37:6:35619595:35619722:1 gene:ENSG00000212579 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391277 ncrna:snoRNA chromosome:GRCh37:6:35619595:35619722:1 gene:ENSG00000212579 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	 35619595	 35619722	+	ENSG00000212579	ENST00000391277	NA	NA	FKBP5	NA	chr6:35609595-35629722	inner
CUST_11454_PI429285431	7.9597454	P	7.891278	P	1.0486021434601	0	lncRNA	13021-1_{1..935}	lnc-AC091435.2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC091435.2-1:1	chr5	 38792364	 38793298	+	lnc-AC091435.2-1	lnc-AC091435.2-1:1	XLOC_004346	linc-OSMR	OSMR	NA	chr5:38782364-38803270	inter
CUST_8830_PI429285431	6.6448874	P	6.5431056	P	1.07309797372231	0	lncRNA	10371-1_{1..722}	lnc-EEFSEC-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EEFSEC-3:3	chr3	128208622	128209343	+	lnc-EEFSEC-3	lnc-EEFSEC-3:3	ENSG00000244300	RP11-475N22.4	GATA2	NA	chr3:128198622-128212030	inner
CUST_19556_PI429285431	2.1357474	A	1.4655346	A	1.59130767081837	0	lncRNA	21212-1_{1..1451}	lnc-GOLGA8J-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GOLGA8J-2:1	chr15	 30114834	 30116284	+	lnc-GOLGA8J-2	lnc-GOLGA8J-2:1	ENSG00000259523.1	RP11-680F8.3	TJP1	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10chr15:30104834-30114706"	NA	inter
CUST_6352_PI429285431	7.0706344	P	6.8270726	P	1.18391195925781	0	lncRNA	6276-1_{1..380}	"transcript_id ""ENST00000587970.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587970.1"" | genecode_v17"	chr19	 15945916	 15946295	-	ENSG00000267308.1	ENST00000587970.1	AC004510.3	AC004510.3-002	NA	NA	NA	inter
CUST_46683_PI429285431	7.294147	P	7.004461	P	1.222374201175	0	lncRNA	50847-3_{6001..9000}	"gi|224586818|ref|NR_027264.1| Homo sapiens golgi glycoprotein 1 (GLG1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224586818|ref|NR_027264.1| Homo sapiens golgi glycoprotein 1 (GLG1), transcript variant 4, non-coding RNA"	Chr16	 74487325	 74490324	-	2734	NR_027264.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30"	NA	inter
CUST_50182_PI429285431	8.8304825	P	8.612599	P	1.16302612148153	0	lncRNA	53908-1_{1..2583}	hg19_lincRNAsTranscripts_TCONS_l2_00029706 range=chr9:35406752-35451112 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029706 range=chr9:35406752-35451112 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 35406752	 35409334	+	NA	NA	NA	NA	UNC13B	NA	chr9:35396752-35405332	inter
CUST_51202_PI429285431	2.8999817	A	2.014826	A	1.84696394062197	0	lncRNA	54821-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008469 range=chr15:28834619-28930405 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008469 range=chr15:28834619-28930405 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28834619	 28837618	+	NA	NA	NA	NA	NA	"hg19_refFlat_FRMD6:range=chr14:52156555-521947475'pad=0,hg19_refFlat_FRMD6:range=chr14:52156555-521947475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_37097_PI429285431	0.9096225	A	0.9034948	A	1.00425643095747	0	lncRNA	38222-1_{1..633}	n345540|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1089|NULL|-1.3911400|-0.2344598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345540|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1089|NULL|-1.3911400|-0.2344598	chr2	118879703	118880335	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37806_PI429285431	4.5866866	P	4.832044	P	0.843606782856404	0	lncRNA	38899-1_{1..782}	n346318|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1868|NULL|-1.3715500|-0.0735581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346318|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1868|NULL|-1.3715500|-0.0735581	chr11	  1212781	  1213562	-	NA	NA	NA	NA	MUC5AC	NA	chr11:1202781-1222364	inter
LNCA_21_P0001400	0.95850074	A	0.91880393	A	1.02789778579476	0	lncRNA	TCONS_00001221	NA	NA	NA	NA	XLOC_000494	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000494), lincRNA [TCONS_00001221]"	chr1:185344012-185344071	hs|1q25.3	Agilent_HUMAN_G3V2	TCONS_00001221	TCONS_00001221	chr1	185344012	185344071	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36226_PI429285431	4.9923587	P	4.1468916	P	1.79684641485277	0	lncRNA	37477-1_{1..2625}	n344768|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_317|NULL|-1.3085500|-0.2472098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n344768|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_317|NULL|-1.3085500|-0.2472098	chrX	130928298	130930922	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_922_PI429285431	0.9472174	A	0.93888843	A	1.0057898991199	0	lncRNA	912-1_{1..717}	"transcript_id ""ENST00000450294.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450294.1"" | genecode_v17"	chr2	 67487935	 67488651	+	ENSG00000235885.3	ENST00000450294.1	AC023115.2	AC023115.2-001	NA	NA	NA	inter
CUST_20163_PI429285431	1.681469	A	0.9204736	A	1.69465946650084	0	lncRNA	21808-1_{1..353}	lnc-UPF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UPF2-1:1	chr10	 12125706	 12126058	-	lnc-UPF2-1	lnc-UPF2-1:1	ENSG00000229098.1	RP11-348G8.3	DHTKD1	NA	chr10:12115706-12135895	inner
CUST_35096_PI429285431	1.8047899	A	2.349218	A	0.68566315295262	0	lncRNA	36503-1_{1..1593}	n342064|BC040912|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4545|NULL|-0.7052490|-0.2282674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342064|BC040912|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4545|NULL|-0.7052490|-0.2282674	chr12	129693145	129694737	+	NA	NA	NA	NA	TMEM132D	"hg19_refFlat_TMEM132D:range=chr12:129558420-1303878845'pad=0,hg19_refFlat_TMEM132D:range=chr12:129558420-1303878845'pad=0 3'pad=0 strand=- repeatMasking=none,-94.80chr12:129683145-129707207"	NA	inner
CUST_46605_PI429285431	4.184421	P	4.0179605	P	1.12230165562887	0	lncRNA	50784-2_{3001..5052}	"gi|318055756|ref|NR_027155.2| Homo sapiens smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene (LOC100271836), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|318055756|ref|NR_027155.2| Homo sapiens smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene (LOC100271836), non-coding RNA"	Chr16	 21461004	 21463055	-	100271836	NR_027155.2	NA	NA	NA	NA	NA	inter
CUST_18303_PI429285431	6.335906	P	6.5552273	P	0.858969434116441	0	lncRNA	20033-1_{1..1499}	lnc-PSD4-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PSD4-1:13	chr2	113996666	113998164	+	lnc-PSD4-1	lnc-PSD4-1:13	ENSG00000189223	AC016683.6	PAX8	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr2:113986666-114007485"	NA	inner
CUST_3162_PI429285431	0.90624267	A	1.0640689	A	0.896374659768826	0	lncRNA	3141-1_{1..954}	"transcript_id ""ENST00000517961.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517961.2"" | genecode_v17"	chr8	 67025522	 67026475	+	ENSG00000253190.2	ENST00000517961.2	AC084082.3	AC084082.3-001	NA	NA	NA	inter
LNCA_21_P0004582	1.6780502	A	2.2085996	A	0.692291048992976	0	lncRNA	TCONS_00011088	NA	NA	NA	NA	XLOC_005087	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005087), lincRNA [TCONS_00011088]"	chr5:173133394-173133335	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_00011088	TCONS_00011088	chr5	173133335	173133394	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14706_PI429285431	0.9023793	A	0.89409006	A	1.00576220131729	0	lncRNA	16370-1_{1..2513}	lnc-ROBO2-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-ROBO2-5:4	chr3	 81144263	 81146775	+	lnc-ROBO2-5	lnc-ROBO2-5:4	XLOC_002717	linc-CADM2-7	NA	NA	NA	inter
CUST_8455_PI429285431	0.92868054	A	1.4136348	A	0.714519723039182	0	lncRNA	10023-1_{1..2457}	lnc-SLC22A7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC22A7-1:1	chr6	 43298810	 43301266	+	lnc-SLC22A7-1	lnc-SLC22A7-1:1	ENSG00000248207	ENST00000510082	ZNF318	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60chr6:43303808-43310703"	NA	inter
LNCA_21_P0005709	3.7581358	P	4.5239663	P	0.588114717771521	0	lncRNA	TCONS_00014734	NA	NA	NA	NA	XLOC_006819	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006819), lincRNA [TCONS_00014734]"	chr8:63925643-63925702	hs|8q12.3	Agilent_HUMAN_G3V2	TCONS_00014734	TCONS_00014734	chr8	 63925643	 63925702	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5855_PI429285431	2.2335548	A	2.024982	A	1.15554448475126	0	lncRNA	5784-1_{1..1958}	"transcript_id ""ENST00000301683.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000301683.3"" | genecode_v17"	chr17	 41026687	 41028644	-	ENSG00000213373.3	ENST00000301683.3	LINC00671	LINC00671-001	G6PC	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60chr17:41052815-41060721"	NA	inter
CUST_34732_PI429285431	1.0570573	A	1.6451982	A	0.665199551027653	0	lncRNA	36177-1_{1..3000}	n341638|AL834492|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4109|NULL|0.1799010|-0.1081810	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n341638|AL834492|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4109|NULL|0.1799010|-0.1081810	chr8	145018790	145021789	+	NA	NA	NA	NA	PLEC	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.41;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr8:145008790-145031955"	NA	inner
CUST_18948_PI429285431	0.986495	A	0.89562905	A	1.06500924199296	0	lncRNA	20639-1_{1..588}	lnc-BTBD17-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BTBD17-3:1	chr17	 72209091	 72209678	-	lnc-BTBD17-3	lnc-BTBD17-3:1	ENSG00000246731	CTD-2514K5.2	TTYH2	NA	chr17:72209696-72219481	inter
CUST_3641_PI429285431	6.329384	P	6.741384	P	0.751580739032781	0	lncRNA	3610-1_{1..596}	"transcript_id ""ENST00000446012.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446012.1"" | genecode_v17"	chr10	 29081498	 29082093	-	ENSG00000235824.2	ENST00000446012.1	LINC00837	LINC00837-002	NA	NA	NA	inter
CUST_7492_PI429285431	0.9209666	A	0.91918457	A	1.0012359722551	0	lncRNA	9131-1_{1..2277}	lnc-KLF4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KLF4-4:1	chr9	109865055	109867331	-	lnc-KLF4-4	lnc-KLF4-4:1	ENSG00000230782	RP11-508N12.2	NA	NA	NA	inter
CUST_13081_PI429285431	1.1102003	A	0.89329964	A	1.16223407653098	0	lncRNA	14707-2_{3001..3301}	lnc-AC009120.10.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC009120.10.1-2:1	chr16	 74305755	 74306055	+	lnc-AC009120.10.1-2	lnc-AC009120.10.1-2:1	XLOC_011789	linc-PSMD7-1	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-24.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.51;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60"	NA	inter
CUST_52055_PI429285431	4.629	P	5.187508	P	0.67900401012016	0	lncRNA	55586-1_{1..1745}	hg19_lincRNAsTranscripts_TCONS_l2_00017086 range=chr21:44855114-44857669 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017086 range=chr21:44855114-44857669 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr21	 44855114	 44856858	+	NA	NA	NA	NA	SIK1	NA	chr21:44845114-44847002	inter
CUST_35739_PI429285431	3.3731565	P	1.9596033	A	2.6639245098986	0	lncRNA	37156-1_{1..2661}	n342908|AK094786|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5416|NULL|-0.3018550|-0.3212112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342908|AK094786|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5416|NULL|-0.3018550|-0.3212112	chr12	126144253	126146913	+	NA	NA	NA	NA	TMEM132B	"hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00chr12:126134253-126143589"	NA	inter
CUST_10925_PI429285431	1.5104281	A	0.9111178	A	1.5149921307532	0	lncRNA	12466-1_{1..363}	lnc-FRG1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRG1-5:3	chr4	190198789	190199151	+	lnc-FRG1-5	lnc-FRG1-5:3	XLOC_003839	linc-FRG1-5	NA	NA	NA	inter
CUST_40605_PI429285431	1.1285938	A	0.91203934	A	1.16195521152318	0	lncRNA	41351-1_{1..2188}	n410086|NR_036523_3|lncRNA|Homosapiens||RefGeneNoncode|NR_036523_3||-0.4021450|-0.2629970	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410086|NR_036523_3|lncRNA|Homosapiens||RefGeneNoncode|NR_036523_3||-0.4021450|-0.2629970	chr6	  2713996	  2716183	+	NA	NA	NA	NA	MYLK4	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr6:2703996-2739466"	NA	inner
CUST_44471_PI429285431	0.9156428	A	0.91748166	A	0.998726211333921	0	lncRNA	49075-1_{1..1207}	"gi|335334999|ref|NR_038377.1| Homo sapiens uncharacterized LOC441058 (MGC39584), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|335334999|ref|NR_038377.1| Homo sapiens uncharacterized LOC441058 (MGC39584), non-coding RNA"	NT_113885.1	    49162	    50368	-	441058	NR_038377.1	NA	NA	NA	NA	NA	Unknown
CUST_32166_PI429285431	1.204689	A	0.9123988	A	1.22458269404274	0	lncRNA	33866-1_{1..338}	n338737|AF075011|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1157|NULL|-0.9227170|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338737|AF075011|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1157|NULL|-0.9227170|-1.0000000	chr13	 52495386	 52495723	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31319_PI429285431	0.9189067	A	0.9128115	A	1.00423380804309	0	lncRNA	33102-1_{1..1772}	n337785|BC034958|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|167|NULL|-0.8286070|-0.2452913	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337785|BC034958|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|167|NULL|-0.8286070|-0.2452913	chr15	 58357400	 58359171	+	NA	NA	NA	NA	ALDH1A2	"hg19_refFlat_ALDH1A2:range=chr15:58247395-583578485'pad=0,hg19_refFlat_ALDH1A2:range=chr15:58247395-583578485'pad=0 3'pad=0 strand=- repeatMasking=none,-102.70chr15:58347400-58358121"	NA	inner
CUST_50977_PI429285431	0.9157243	A	0.90847695	A	1.00503611905056	0	lncRNA	54619-1_{1..389}	hg19_lincRNAsTranscripts_TCONS_l2_00005844 range=chr12:97211610-97254828 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005844 range=chr12:97211610-97254828 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 97211610	 97211998	+	NA	NA	NA	NA	C12orf63	NA	chr12:97201610-97216602	inter
CUST_1882_PI429285431	1.2364969	A	1.0864371	A	1.10961546489913	0	lncRNA	1872-1_{1..653}	"transcript_id ""ENST00000509105.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509105.1"" | genecode_v17"	chr4	130669272	130669924	-	ENSG00000246876.2	ENST00000509105.1	RP11-519M16.1	RP11-519M16.1-002	NA	NA	NA	inter
CUST_19806_PI429285431	1.5686452	A	1.3723958	A	1.14571594181509	0	lncRNA	21463-1_{1..494}	lnc-ALK-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALK-1:3	chr2	 30359118	 30359611	-	lnc-ALK-1	lnc-ALK-1:3	ENSG00000233862.1	AC016907.3	NA	NA	NA	inter
CUST_32539_PI429285431	1.3866528	A	1.9440978	A	0.679504495127322	0	lncRNA	34205-1_{1..326}	n339152|U05597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1582|NULL|1.5147400|-0.1721741	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339152|U05597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1582|NULL|1.5147400|-0.1721741	chr2	220495851	220496176	+	NA	NA	NA	NA	SLC4A3	NA	chr2:220492292-220506177	inter
CUST_6081_PI429285431	3.7651896	P	4.230287	P	0.72442216804921	0	lncRNA	6005-1_{1..928}	"transcript_id ""ENST00000582531.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582531.1"" | genecode_v17"	chr18	 10323129	 10324056	-	ENSG00000264876.1	ENST00000582531.1	RP11-138E9.2	RP11-138E9.2-001	NA	NA	NA	inter
LNCA_21_P0002348	0.9232605	A	0.9071407	A	1.01123604942782	0	lncRNA	TCONS_00004017	NA	NA	NA	NA	XLOC_001856	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001856), lincRNA [TCONS_00004017]"	chr2:217385483-217385542	hs|2q35	Agilent_HUMAN_G3V2	TCONS_00004017	TCONS_00004017	chr2	217385483	217385542	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23129_PI429285431	0.9200887	A	0.9079669	A	1.00843758897361	0	lncRNA	24700-1_{1..463}	lnc-ZNF18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF18-1:1	chr17	 11880565	 11881027	-	lnc-ZNF18-1	lnc-ZNF18-1:1	ENSG00000266368.1	RP11-1096G20.5	DNAH9	NA	chr17:11870565-11873065	inner
CUST_10004_PI429285431	1.4507182	A	0.92802626	A	1.43663337814218	0	lncRNA	11530-1_{1..482}	lnc-GTPBP8-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GTPBP8-1:5	chr3	112880781	112881262	+	lnc-GTPBP8-1	lnc-GTPBP8-1:5	XLOC_002760	linc-BOC	NA	NA	NA	inter
CUST_6698_PI429285431	4.920966	P	5.5464396	P	0.648206952578637	0	lncRNA	6647-1_{1..1563}	"transcript_id ""ENST00000437730.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437730.1"" | genecode_v17"	chr20	 42839632	 42841194	+	ENSG00000223891.1	ENST00000437730.1	RP5-995J12.2	RP5-995J12.2-004	C20orf111	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-19.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20chr20:42829632-42839546"	NA	inter
CUST_28647_PI429285431	0.9101034	A	0.9121983	A	0.998548979720835	0	lncRNA	30338-1_{1..486}	n326025|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047435|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047435|0.2987920|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326025|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047435|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047435|0.2987920|-1.0000000	chr10	 30984423	 30984908	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002856	3.6398995	P	3.8179336	P	0.883906638517613	0	lncRNA	ENST00000497258	NA	NA	NA	NA	XLOC_003140	NA	ENST00000497258	NA	NA	"BROAD Institute lincRNA (XLOC_003140), lincRNA [TCONS_00005779]"	chr3:59365812-59365753	hs|3p14.2	Agilent_HUMAN_G3V2	ENST00000497258	ENST00000497258	chr3	 59365753	 59365812	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17483_PI429285431	7.02138	P	7.1400003	P	0.921068079358961	0	lncRNA	19210-1_{1..925}	lnc-LRRC32-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC32-6:2	chr11	 76494047	 76494971	-	lnc-LRRC32-6	lnc-LRRC32-6:2	XLOC_009509	linc-LRRC32-2	TSKU	NA	chr11:76494285-76504211	inner
CUST_2901_PI429285431	9.858688	P	9.733733	P	1.09047371848953	0	lncRNA	2882-1_{1..398}	"transcript_id ""ENST00000436714.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436714.1"" | genecode_v17"	chr7	108962377	108962774	-	ENSG00000230941.1	ENST00000436714.1	AC002386.1	AC002386.1-001	NA	NA	NA	inter
CUST_29415_PI429285431	2.636131	A	3.6205082	P	0.505443872261873	0	lncRNA	31169-1_{1..485}	n332782|AF043342|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063739_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063739_05|0.3741270|-0.3117592	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332782|AF043342|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063739_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063739_05|0.3741270|-0.3117592	chr6	  2859257	  2859741	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012961	1.6219497	A	2.6921563	A	0.476250793021004	0	lncRNA	XR_110313	XR_110313	XR_110313	NA	Hs.149321	LOC255187	hCG1980447	NA	THC2628435	NA	"PREDICTED: Homo sapiens hCG1980447 (LOC255187), miscRNA [XR_110313]"	chr5:148443849-148443908	hs|5q32	Agilent_HUMAN_G3V2	XR_110313	XR_110313	chr5	148443849	148443908	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41699_PI429285431	7.6942844	P	7.9971533	P	0.810638780577687	0	lncRNA	43190-1_{1..62}	ENST00000577608 ncrna:miRNA chromosome:GRCh37:19:804940:805001:1 gene:ENSG00000265767 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577608 ncrna:miRNA chromosome:GRCh37:19:804940:805001:1 gene:ENSG00000265767 gene_biotype:miRNA transcript_biotype:miRNA	chr19	   804940	   805001	+	ENSG00000265767	ENST00000577608	NA	NA	PTBP1	NA	chr19:797392-812327	inner
CUST_19564_PI429285431	3.567954	P	3.345039	P	1.16708933779465	0	lncRNA	21220-1_{1..724}	lnc-ZNF705A-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF705A-1:7	chr12	  8356654	  8357377	+	lnc-ZNF705A-1	lnc-ZNF705A-1:7	ENSG00000226711.2	FAM66C	NA	NA	NA	inter
CUST_11893_PI429285431	6.985736	P	7.191459	P	0.867104033041218	0	lncRNA	13475-1_{1..536}	lnc-BTN2A1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BTN2A1-1:3	chr6	 26476389	 26476924	+	lnc-BTN2A1-1	lnc-BTN2A1-1:3	XLOC_005210	linc-BTN1A1-2	BTN2A1	NA	chr6:26466389-26476849	inter
CUST_40293_PI429285431	0.91340184	A	1.0960704	A	0.881071765398927	0	lncRNA	41097-1_{1..755}	n408243|NR_028410|lncRNA|Homosapiens||RefGeneNoncode|NR_028410||3.4198100|-0.1981267	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n408243|NR_028410|lncRNA|Homosapiens||RefGeneNoncode|NR_028410||3.4198100|-0.1981267	chr22	 44965219	 44965973	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24846_PI429285431	4.606672	P	4.67741	P	0.952150807727147	0	lncRNA	26386-1_{1..536}	lnc-RP11-809H16.2.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RP11-809H16.2.1-2:2	chr15	 69366924	 69367459	+	lnc-RP11-809H16.2.1-2	lnc-RP11-809H16.2.1-2:2	ENSG00000212766.4	LINC00277	NA	NA	NA	inter
CUST_46300_PI429285431	9.258512	P	8.459261	P	1.74019743853177	0	lncRNA	50531-1_{1..1931}	"gi|383792158|ref|NR_047548.1| Homo sapiens sec1 family domain containing 1 (SCFD1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|383792158|ref|NR_047548.1| Homo sapiens sec1 family domain containing 1 (SCFD1), transcript variant 6, non-coding RNA"	Chr14	 31091460	 31093390	+	23256	NR_047548.1	NA	NA	NA	NA	NA	inter
CUST_50242_PI429285431	1.2334987	A	1.6697974	A	0.739028189136131	0	lncRNA	53966-1_{1..543}	hg19_lincRNAsTranscripts_TCONS_l2_00029340 range=chr9:67333932-67340186 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029340 range=chr9:67333932-67340186 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 67333932	 67334474	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50124_PI429285431	2.5468175	A	2.870265	A	0.7991579064163	0	lncRNA	53852-1_{1..1017}	hg19_lincRNAsTranscripts_TCONS_l2_00029772 range=chr9:71155952-71258607 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029772 range=chr9:71155952-71258607 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 71155952	 71156968	+	NA	NA	NA	NA	PGM5	NA	chr9:71145952-71145977	inter
LNCA_21_P0012637	0.9235865	A	0.9104858	A	1.00912206802721	0	lncRNA	TCONS_l2_00020896	NA	NA	NA	NA	XLOC_l2_010948	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010948), lincRNA [TCONS_l2_00020896]"	chr4:175001146-175001205	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_l2_00020896	TCONS_l2_00020896	chr4	175001146	175001205	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19487_PI429285431	4.1247144	P	4.9807653	P	0.552462750512017	0	lncRNA	21143-1_{1..1087}	lnc-GFM1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-GFM1-1:3	chr3	158460570	158461656	+	lnc-GFM1-1	lnc-GFM1-1:3	ENSG00000240207.1	RP11-379F4.4	LOC100287290	NA	chr3:158458206-158461381	inter
CUST_7603_PI429285431	0.9238663	A	0.91700757	A	1.00476542806932	0	lncRNA	9238-1_{1..1574}	lnc-TOR1AIP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TOR1AIP1-2:1	chr1	179832815	179834388	+	lnc-TOR1AIP1-2	lnc-TOR1AIP1-2:1	ENSG00000245075	ENST00000501063	TOR1AIP2	"hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.61;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr1:179822815-179843589"	NA	inner
CUST_14704_PI429285431	1.4112614	A	1.3665954	A	1.03144436077916	0	lncRNA	16368-1_{1..2266}	lnc-CAMK1G-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CAMK1G-5:1	chr1	208909462	208911727	+	lnc-CAMK1G-5	lnc-CAMK1G-5:1	XLOC_000545	linc-LOC642587-4	NA	NA	NA	inter
CUST_47464_PI429285431	0.9087516	A	0.9010629	A	1.00534362724494	0	lncRNA	51490-1_{1..3000}	"gi|341915906|ref|XR_109745.2| PREDICTED: Homo sapiens preferentially expressed antigen in melanoma-like (PRAMEL), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|341915906|ref|XR_109745.2| PREDICTED: Homo sapiens preferentially expressed antigen in melanoma-like (PRAMEL), misc_RNA"	Chr22	 22345496	 22348495	-	649179	XR_109745.3	NA	NA	NA	"hg19_refFlat_HHLA3:range=chr1:70820635-708322015'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708322015'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.30;hg19_refFlat_HHLA3:range=chr1:70820635-708322145'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708322145'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.30;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.30"	NA	inter
CUST_17826_PI429285431	0.89980567	A	0.9029162	A	0.997846267517719	0	lncRNA	19561-1_{1..353}	lnc-SNX9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNX9-2:1	chr6	158210455	158210807	+	lnc-SNX9-2	lnc-SNX9-2:1	XLOC_005516	linc-SNX9	NA	NA	NA	inter
CUST_37528_PI429285431	0.9234933	A	0.9117481	A	1.00817438155892	0	lncRNA	38632-1_{1..689}	n346002|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1551|NULL|-1.2535700|-0.3269596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346002|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1551|NULL|-1.2535700|-0.3269596	chr8	 72665907	 72666595	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9031_PI429285431	4.332499	P	4.4163513	P	0.943534843008672	0	lncRNA	10558-1_{1..2624}	lnc-DMBX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DMBX1-2:1	chr1	 47034154	 47036777	+	lnc-DMBX1-2	lnc-DMBX1-2:1	ENSG00000235894	ENST00000429472	MKNK1	NA	chr1:47024154-47045926	inter
CUST_29594_PI429285431	9.96603	P	9.585842	P	1.30151144652189	0	lncRNA	31355-1_{1..448}	n333107|AF321824|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077399|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077399|1.0857000|-0.2121861	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333107|AF321824|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077399|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077399|1.0857000|-0.2121861	chr8	143856695	143857142	-	NA	NA	NA	NA	LY6D	NA	chr8:143866298-143868008	inner
CUST_30786_PI429285431	8.593302	P	7.237875	P	2.5587283671689	0	lncRNA	32573-1_{1..341}	n336648|Z50167|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327513|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327513|0.6642150|-0.0436607	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336648|Z50167|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327513|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327513|0.6642150|-0.0436607	chr15	 68650844	 68651184	-	NA	NA	NA	NA	ITGA11	NA	chr15:68640844-68671579	inner
CUST_49646_PI429285431	0.9169629	A	1.5544384	A	0.642836833249538	0	lncRNA	53429-1_{1..430}	hg19_lincRNAsTranscripts_TCONS_l2_00026595 range=chr7:57277500-57281080 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026595 range=chr7:57277500-57281080 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 57277500	 57277929	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35539_PI429285431	13.212252	P	13.192167	P	1.01401922151807	0	lncRNA	36955-1_{1..916}	n342662|CR592555|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5164|NULL|-1.4034900|-0.5110546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n342662|CR592555|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5164|NULL|-1.4034900|-0.5110546	chr5	 79946860	 79947775	-	NA	NA	NA	NA	MSH3	NA	chr5:79950294-79957776	inner
CUST_42127_PI429285431	6.178153	P	6.568308	P	0.763047619908749	0	lncRNA	44121-1_{1..69}	ENST00000408613 ncrna:miRNA chromosome:GRCh37:17:19247819:19247887:-1 gene:ENSG00000221540 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408613 ncrna:miRNA chromosome:GRCh37:17:19247819:19247887:-1 gene:ENSG00000221540 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 19247819	 19247887	-	ENSG00000221540	ENST00000408613	NA	NA	EPN2	NA	chr17:19237819-19240028	inner
CUST_24758_PI429285431	1.9858947	A	1.5786713	A	1.32613109458047	0	lncRNA	26302-1_{1..600}	lnc-MAP1LC3B2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP1LC3B2-5:1	chr12	116827196	116827795	+	lnc-MAP1LC3B2-5	lnc-MAP1LC3B2-5:1	ENSG00000258346.1	RP11-148B3.2	NA	NA	NA	inter
CUST_22613_PI429285431	3.8530853	P	3.5252602	P	1.25511982207322	0	lncRNA	24198-1_{1..739}	lnc-C4orf42-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C4orf42-1:1	chr4	  1243899	  1244637	+	lnc-C4orf42-1	lnc-C4orf42-1:1	ENSG00000196810.4	CTBP1-AS1	CTBP1	NA	chr4:1233899-1242908	inter
CUST_3483_PI429285431	1.0530794	A	0.8905758	A	1.11922772046696	0	lncRNA	3454-1_{1..474}	"transcript_id ""ENST00000442072.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442072.1"" | genecode_v17"	chr9	 94188520	 94188993	+	ENSG00000233081.1	ENST00000442072.1	RP11-440G5.2	RP11-440G5.2-001	NFIL3	NA	chr9:94178520-94186144	inter
CUST_23484_PI429285431	0.9129022	A	1.4731946	A	0.678164701925286	0	lncRNA	25051-1_{1..405}	lnc-AL353997.5.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL353997.5.1-3:1	chr17	 18379002	 18379406	+	lnc-AL353997.5.1-3	lnc-AL353997.5.1-3:1	ENSG00000265785.1	RP1-37N7.4	LGALS9C	NA	chr17:18369002-18389234	inter
CUST_49214_PI429285431	2.669629	A	2.642138	A	1.0192380202376	0	lncRNA	53034-1_{1..716}	hg19_lincRNAsTranscripts_TCONS_l2_00021408 range=chr4:175016539-175041230 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021408 range=chr4:175016539-175041230 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	175016539	175017254	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13912_PI429285431	2.247075	A	2.8268328	A	0.669076092624817	0	lncRNA	15559-1_{1..2055}	lnc-RASGRP1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASGRP1-4:3	chr15	 38364249	 38366303	-	lnc-RASGRP1-4	lnc-RASGRP1-4:3	XLOC_011430	linc-MEIS2-4	NA	NA	NA	inter
CUST_49007_PI429285431	7.8917217	P	8.177482	P	0.82030919209744	0	lncRNA	52838-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00019116 range=chr3:197360474-197372879 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019116 range=chr3:197360474-197372879 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	197360474	197363473	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11972_PI429285431	3.6967163	P	3.863344	P	0.890922781314626	0	lncRNA	13552-1_{1..587}	lnc-MAPK8IP2-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAPK8IP2-1:13	chr22	 51035457	 51036043	+	lnc-MAPK8IP2-1	lnc-MAPK8IP2-1:13	XLOC_014288	linc-MAPK8IP2	MAPK8IP2	NA	chr22:51039131-51045866	inter
CUST_9137_PI429285431	1.497069	A	1.6686484	A	0.887870147165526	0	lncRNA	10656-1_{1..2058}	lnc-GADD45A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-GADD45A-1:3	chr1	 68667652	 68669709	+	lnc-GADD45A-1	lnc-GADD45A-1:3	ENSG00000232284	RP11-518D3.1	WLS	"hg19_refFlat_WLS:range=chr1:68564315-686979825'pad=0,hg19_refFlat_WLS:range=chr1:68564315-686979825'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70chr1:68657652-68678670"	NA	inner
CUST_38627_PI429285431	7.718774	P	7.700962	P	1.01242286823943	0	lncRNA	39631-1_{1..3000}	n383807|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vgn.1||-0.9398340|-0.2605655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383807|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vgn.1||-0.9398340|-0.2605655	chr2	218148747	218151746	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009623	3.5675957	P	4.656416	P	0.470145658268304	0	lncRNA	TCONS_00026676	NA	NA	NA	NA	XLOC_012769	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012769), lincRNA [TCONS_00026676]"	chr18:11490473-11471228	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_00026676	TCONS_00026676	chr18	 11471228	 11490473	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33445_PI429285431	4.153963	P	4.422555	P	0.830129316329423	0	lncRNA	35023-1_{1..1706}	n340180|BC027846|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2641|NULL|-1.1123100|-0.2741593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n340180|BC027846|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2641|NULL|-1.1123100|-0.2741593	chr4	 89206093	 89207798	+	NA	NA	NA	NA	PPM1K	NA	chr4:89196093-89205888	inter
CUST_40904_PI429285431	0.91338384	A	1.348331	A	0.739720847067842	0	lncRNA	41590-1_{1..1673}	n410740|NR_038190_5|lncRNA|Homosapiens||RefGeneNoncode|NR_038190_5||0.0075234|-0.2713026	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410740|NR_038190_5|lncRNA|Homosapiens||RefGeneNoncode|NR_038190_5||0.0075234|-0.2713026	chr6	  3496472	  3498144	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30"	NA	inter
CUST_51112_PI429285431	0.9218078	A	0.918238	A	1.00247746065147	0	lncRNA	54749-1_{1..947}	hg19_lincRNAsTranscripts_TCONS_l2_00006987 range=chr13:104073681-104080432 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006987 range=chr13:104073681-104080432 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	104073681	104074627	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22277_PI429285431	2.024535	A	0.92406183	A	2.14425007328826	0	lncRNA	23877-2_{3001..4998}	lnc-ZNF720-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZNF720-2:1	chr16	 31926175	 31928172	+	lnc-ZNF720-2	lnc-ZNF720-2:1	ENSG00000262657.1	RP11-170L3.8	ZNF267	NA	chr16:31913175-31928627	inner
CUST_2635_PI429285431	2.8254342	A	2.3948817	A	1.34774961738514	0	lncRNA	2622-1_{1..596}	"transcript_id ""ENST00000580741.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580741.1"" | genecode_v17"	chr6	135818944	135819539	+	ENSG00000231028.4	ENST00000580741.1	LINC00271	LINC00271-002	AHI1	NA	chr6:135808944-135818903	inter
CUST_39358_PI429285431	0.91628593	A	0.9161025	A	1.00012715207047	0	lncRNA	40322-1_{1..531}	n386452|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lfq.2||-0.3038580|-0.1952353	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386452|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lfq.2||-0.3038580|-0.1952353	chr7	 97595943	 97596473	+	NA	NA	NA	NA	NA	"hg19_refFlat_OR7E24:range=chr19:9361720-93627395'pad=0,hg19_refFlat_OR7E24:range=chr19:9361720-93627395'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_LOC650293:range=chr4:8951477-89521275'pad=0,hg19_refFlat_LOC650293:range=chr4:8951477-89521275'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00"	NA	inter
CUST_21824_PI429285431	0.91642654	A	0.9102215	A	1.00431026858223	0	lncRNA	23434-1_{1..675}	lnc-HHIPL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-HHIPL2-2:1	chr1	222560662	222561336	-	lnc-HHIPL2-2	lnc-HHIPL2-2:1	ENSG00000236230.1	RP11-400N13.1	NA	NA	NA	inter
CUST_28289_PI429285431	1.181725	A	1.3547773	A	0.886964150701902	0	lncRNA	29928-1_{1..294}	n325588|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000133457|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000133457|-1.0150300|-0.2363644	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325588|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000133457|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000133457|-1.0150300|-0.2363644	chr16	 26503576	 26503869	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008250	1.0167354	A	0.9674757	A	1.0347338275256	0	lncRNA	TCONS_00022265	NA	NA	NA	NA	XLOC_010582	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010582), lincRNA [TCONS_00022265]"	chr13:43315794-43315735	hs|13q14.11	Agilent_HUMAN_G3V2	TCONS_00022265	TCONS_00022265	chr13	 43315735	 43315794	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38034_PI429285431	0.92129934	A	0.91327363	A	1.00557850046622	0	lncRNA	39117-1_{1..2776}	n377607|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029981||-0.1478190|-0.2593989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377607|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029981||-0.1478190|-0.2593989	chr6	   800386	   803161	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.66;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40"	NA	inter
CUST_28549_PI429285431	5.112409	P	5.1119184	P	1.00034011583306	0	lncRNA	30222-1_{1..282}	n325899|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049935|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049935|-1.0581400|-0.2655768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325899|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049935|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049935|-1.0581400|-0.2655768	chr10	103072389	103072670	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28410_PI429285431	0.91636866	A	1.5033656	A	0.665727218644339	0	lncRNA	30068-1_{1..787}	n325731|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044963|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044963|0.8017270|-0.3877975	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325731|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044963|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044963|0.8017270|-0.3877975	chr13	 49536816	 49537602	+	NA	NA	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20"	NA	inter
CUST_23562_PI429285431	7.866435	P	7.9552555	P	0.940291186184563	0	lncRNA	25129-1_{1..338}	lnc-MFSD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MFSD3-1:1	chr8	145738990	145739327	+	lnc-MFSD3-1	lnc-MFSD3-1:1	ENSG00000265393.1	CTD-2517M22.17	LRRC24	"hg19_refFlat_RECQL4:range=chr8:145736814-1457431685'pad=0,hg19_refFlat_RECQL4:range=chr8:145736814-1457431685'pad=0 3'pad=0 strand=- repeatMasking=none,-106.80chr8:145747761-145749056"	NA	inner
CUST_37816_PI429285431	8.3584	P	8.107504	P	1.18994591321868	0	lncRNA	38907-1_{1..1130}	n346332|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1882|NULL|-1.6406200|-0.2392047	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346332|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1882|NULL|-1.6406200|-0.2392047	chr13	 45957222	 45958351	+	NA	NA	NA	NA	SLC25A30	"hg19_refFlat_RCN1:range=chr11:32112743-321260185'pad=0,hg19_refFlat_RCN1:range=chr11:32112743-321260185'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30chr13:45967451-45975346"	NA	inter
CUST_51869_PI429285431	8.397649	P	8.479097	P	0.94510858666839	0	lncRNA	55421-1_{1..625}	hg19_lincRNAsTranscripts_TCONS_l2_00012656 range=chr19:52206403-52208411 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012656 range=chr19:52206403-52208411 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 52206403	 52207027	+	NA	NA	NA	NA	HAS1	NA	chr19:52216365-52218411	inter
CUST_38098_PI429285431	2.1322746	A	1.6864352	A	1.362106397283	0	lncRNA	39174-1_{1..2608}	n381122|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001cqo.1||4.3033000|-0.2975507	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381122|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001cqo.1||4.3033000|-0.2975507	chr1	 47323905	 47326512	-	NA	NA	NA	NA	CYP4A11	NA	chr1:47357206-47376147	inter
CUST_46362_PI429285431	6.315897	P	5.938588	P	1.29891677815396	0	lncRNA	50584-1_{1..429}	"gi|341915662|ref|XR_132751.1| PREDICTED: Homo sapiens uncharacterized LOC100128075 (LOC100128075), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915662|ref|XR_132751.1| PREDICTED: Homo sapiens uncharacterized LOC100128075 (LOC100128075), misc_RNA"	NA	NA	NA	NA	NA	XR_132751.1	NA	NA	NA	NA	NA	Unknown
CUST_6198_PI429285431	0.9165482	A	0.91408944	A	1.00170573567659	0	lncRNA	6124-1_{1..620}	"transcript_id ""ENST00000589450.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589450.1"" | genecode_v17"	chr18	 53717360	 53717979	+	ENSG00000267057.1	ENST00000589450.1	RP11-456O19.2	RP11-456O19.2-005	NA	NA	NA	inter
CUST_41049_PI429285431	0.9239192	A	1.1014485	A	0.884215972181165	0	lncRNA	41710-1_{1..702}	n411718|NR_044997_6|lncRNA|Homosapiens||RefGeneNoncode|NR_044997_6||-1.0103300|-0.2574337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411718|NR_044997_6|lncRNA|Homosapiens||RefGeneNoncode|NR_044997_6||-1.0103300|-0.2574337	chr6	  4691102	  4691803	+	NA	NA	NA	NA	CDYL	NA	chr6:4702676-4706453	inter
CUST_48786_PI429285431	0.9723257	A	0.9228945	A	1.03485683855314	0	lncRNA	52623-2_{3001..4732}	hg19_lincRNAsTranscripts_TCONS_l2_00014219 range=chr2:213692663-213699821 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014219 range=chr2:213692663-213699821 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	213695663	213697394	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1662_PI429285431	2.9150987	A	3.923266	P	0.49717742654748	0	lncRNA	1647-1_{1..536}	"transcript_id ""ENST00000594101.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594101.1"" | genecode_v17"	chr3	195435444	195435979	+	ENSG00000242086.3	ENST00000594101.1	AC069513.3	AC069513.3-019	MUC20	NA	chr3:195447753-195454649	inter
CUST_1218_PI429285431	3.4588773	A	4.193815	P	0.600843970490059	0	lncRNA	1209-1_{1..482}	"transcript_id ""ENST00000435627.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435627.1"" | genecode_v17"	chr2	206950246	206950727	+	ENSG00000227946.1	ENST00000435627.1	AC007383.3	AC007383.3-002	INO80D	NA	chr2:206940246-206950906	inner
CUST_8130_PI429285431	0.9251524	A	0.91516155	A	1.00694916366611	0	lncRNA	9734-1_{1..1713}	lnc-C20orf78-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C20orf78-1:5	chr20	 18774309	 18776021	-	lnc-C20orf78-1	lnc-C20orf78-1:5	ENSG00000179935	RP5-1068E13.3	NA	NA	NA	inter
CUST_16793_PI429285431	1.596724	A	2.2090592	A	0.654137033951609	0	lncRNA	18501-2_{3001..4758}	lnc-NDFIP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDFIP1-1:1	chr5	141546806	141548563	+	lnc-NDFIP1-1	lnc-NDFIP1-1:1	XLOC_004584	linc-ARHGAP26-6	NDFIP1	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70chr5:141533806-141534008"	NA	inter
CUST_37821_PI429285431	0.93383193	A	1.3085479	A	0.771257238713644	0	lncRNA	38913-1_{1..521}	n346341|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1891|NULL|-1.2801800|-0.1662786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346341|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1891|NULL|-1.2801800|-0.1662786	chr8	 57389331	 57389851	+	NA	NA	NA	NA	NA	"hg19_refFlat_SEPT10:range=chr2:110301886-1103714045'pad=0,hg19_refFlat_SEPT10:range=chr2:110301886-1103714045'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00"	NA	inter
CUST_50123_PI429285431	0.93483955	A	1.3032709	A	0.774624292161532	0	lncRNA	53848-4_{9001..10036}	hg19_lincRNAsTranscripts_TCONS_l2_00029375 range=chr9:69494689-69650121 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029375 range=chr9:69494689-69650121 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 69503689	 69504724	-	NA	NA	NA	NA	LOC100132154	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_GXYLT1:range=chr12:42481588-425384485'pad=0,hg19_refFlat_GXYLT1:range=chr12:42481588-425384485'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00chr9:69484689-69660121"	NA	inter
CUST_41157_PI429285431	0.9227577	A	0.92239195	A	1.00025355071984	0	lncRNA	41966-1_{1..83}	ENST00000578032 ncrna:miRNA chromosome:GRCh37:13:61773932:61774014:-1 gene:ENSG00000266663 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578032 ncrna:miRNA chromosome:GRCh37:13:61773932:61774014:-1 gene:ENSG00000266663 gene_biotype:miRNA transcript_biotype:miRNA	chr13	 61773932	 61774014	-	ENSG00000266663	ENST00000578032	NA	NA	NA	NA	NA	inter
CUST_21938_PI429285431	2.6491852	A	2.1156244	A	1.44749744330081	0	lncRNA	23546-1_{1..941}	lnc-ITGB3BP-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITGB3BP-1:4	chr1	 63787987	 63788927	-	lnc-ITGB3BP-1	lnc-ITGB3BP-1:4	ENSG00000230798.1	RP4-792G4.2	FOXD3	NA	chr1:63788730-63790797	inter
CUST_3935_PI429285431	5.105618	P	5.2329993	P	0.915491692714256	0	lncRNA	3905-1_{1..606}	"transcript_id ""ENST00000528445.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000528445.1"" | genecode_v17"	chr11	 45408766	 45409371	-	ENSG00000255041.1	ENST00000528445.1	RP11-430H10.4	RP11-430H10.4-001	NA	NA	NA	inter
CUST_6627_PI429285431	0.9101882	A	1.0715169	A	0.894201146037728	0	lncRNA	6573-1_{1..408}	"transcript_id ""ENST00000448825.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448825.1"" | genecode_v17"	chr20	  4411808	  4412215	-	ENSG00000236387.1	ENST00000448825.1	RP11-307O10.1	RP11-307O10.1-001	NA	NA	NA	inter
CUST_14805_PI429285431	8.675137	P	8.794283	P	0.920732514830696	0	lncRNA	16466-1_{1..338}	lnc-RPL24-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPL24-2:4	chr3	102382143	102382480	-	lnc-RPL24-2	lnc-RPL24-2:4	XLOC_003194	linc-RPL24-2	NA	NA	NA	inter
CUST_13345_PI429285431	2.122996	A	2.0700612	A	1.03737305330232	0	lncRNA	14982-1_{1..335}	lnc-MECOM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MECOM-1:1	chr3	168749447	168749781	-	lnc-MECOM-1	lnc-MECOM-1:1	XLOC_003322	linc-GOLIM4	NA	NA	NA	inter
LNCA_21_P0013461	0.92475307	A	0.9213068	A	1.00239162772375	0	lncRNA	ENST00000458645	NA	NA	NA	NA	XLOC_l2_014077	NA	ENST00000458645	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014077), lincRNA [TCONS_l2_00027531]"	chr7:156376913-156376854	hs|7q36.3	Agilent_HUMAN_G3V2	ENST00000458645	ENST00000458645	chr7	156376854	156376913	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008733	4.6874375	P	5.059762	P	0.772536766298873	0	lncRNA	TCONS_00023667	NA	NA	NA	NA	XLOC_011468	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011468), lincRNA [TCONS_00023667]"	chr15:47104424-47104365	hs|15q21.1	Agilent_HUMAN_G3V2	TCONS_00023667	TCONS_00023667	chr15	 47104365	 47104424	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49940_PI429285431	1.4682208	A	1.2756817	A	1.14277319358403	0	lncRNA	53690-1_{1..531}	hg19_lincRNAsTranscripts_TCONS_l2_00026856 range=chr7:116211019-116254719 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026856 range=chr7:116211019-116254719 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	116211019	116211549	-	NA	NA	NA	NA	CAV1	NA	chr7:116201019-116201239	inter
LNCA_21_P0001167	3.5189376	P	3.5724714	P	0.963573217791233	0	lncRNA	ENST00000440801	NA	NA	NA	NA	XLOC_000980	NA	ENST00000440801	THC2682438	NA	"BROAD Institute lincRNA (XLOC_000980), lincRNA [TCONS_00000615]"	chr1:118139513-118139454	hs|1p12	Agilent_HUMAN_G3V2	ENST00000440801	ENST00000440801	chr1	118139454	118139513	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10877_PI429285431	4.9841065	P	5.3813925	P	0.759285309195857	0	lncRNA	12417-1_{1..561}	lnc-EDEM3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EDEM3-1:1	chr1	184641163	184641723	-	lnc-EDEM3-1	lnc-EDEM3-1:1	XLOC_001125	linc-GLT25D2-1	NA	NA	NA	inter
CUST_8773_PI429285431	2.2862802	A	1.1237603	A	2.23848073181575	0	lncRNA	10316-1_{1..2197}	lnc-AEBP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AEBP2-1:1	chr12	 19681355	 19683551	+	lnc-AEBP2-1	lnc-AEBP2-1:1	ENSG00000248116	ENST00000510738	AEBP2	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80chr12:19671355-19675173"	NA	inter
CUST_19885_PI429285431	0.9162249	A	0.9152116	A	1.00070261275485	0	lncRNA	21541-1_{1..2014}	lnc-DLEU7-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DLEU7-3:3	chr13	 51684932	 51686945	-	lnc-DLEU7-3	lnc-DLEU7-3:3	ENSG00000226792.2	LINC00371	NA	NA	NA	inter
CUST_43637_PI429285431	0.92191136	A	1.3269931	A	0.755193503928588	0	lncRNA	48396-1_{1..1237}	"gi|310118749|ref|XR_108362.1| PREDICTED: Homo sapiens KIRREL intronic transcript 1 (non-protein coding) (KIRREL-IT1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310118749|ref|XR_108362.1| PREDICTED: Homo sapiens KIRREL intronic transcript 1 (non-protein coding) (KIRREL-IT1), misc_RNA"	NA	NA	NA	NA	NA	XR_108362.1	NA	NA	NA	NA	NA	Unknown
CUST_29337_PI429285431	1.7663163	A	2.8670669	A	0.466273841433473	0	lncRNA	31089-1_{1..1022}	n332578|AK311448|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000430314|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000430314|-1.0663000|-0.2330854	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332578|AK311448|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000430314|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000430314|-1.0663000|-0.2330854	chr17	 58211983	 58213004	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46270_PI429285431	4.982873	P	5.3048964	P	0.799947153369462	0	lncRNA	50509-1_{1..2716}	"gi|310124562|ref|XR_110307.1| PREDICTED: Homo sapiens uncharacterized LOC100506063 (LOC100506063), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|310124562|ref|XR_110307.1| PREDICTED: Homo sapiens uncharacterized LOC100506063 (LOC100506063), misc_RNA"	NA	NA	NA	NA	NA	XR_110307.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011293	5.2497244	P	5.3946986	P	0.904395550900508	0	lncRNA	TCONS_l2_00008470	NA	NA	NA	NA	XLOC_l2_004594	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004594), lincRNA [TCONS_l2_00008470]"	chr15:28874389-28874448	hs|15q13.1	Agilent_HUMAN_G3V2	TCONS_l2_00008470	TCONS_l2_00008470	chr15	 28874389	 28874448	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13921_PI429285431	5.480137	P	5.781446	P	0.811515749907264	0	lncRNA	15568-3_{6001..7635}	lnc-EIF2AK4-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-EIF2AK4-2:9	chr15	 40363422	 40365056	+	lnc-EIF2AK4-2	lnc-EIF2AK4-2:9	XLOC_011219	linc-BUB1B	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-23.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-32.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_12243_PI429285431	7.5268774	P	7.784045	P	0.836729032997374	0	lncRNA	13847-1_{1..515}	lnc-LYPD6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYPD6-1:1	chr2	150146541	150147055	+	lnc-LYPD6-1	lnc-LYPD6-1:1	XLOC_001701	linc-LYPD6	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40"	NA	inter
CUST_6474_PI429285431	9.231037	P	9.49842	P	0.830825268668216	0	lncRNA	6415-1_{1..442}	"transcript_id ""ENST00000603717.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603717.1"" | genecode_v17"	chr19	 35393106	 35393547	-	ENSG00000270544.1	ENST00000603717.1	CTC-523E23.14	CTC-523E23.14-001	NA	NA	NA	inter
CUST_37653_PI429285431	0.9278119	A	0.9142129	A	1.00947067418615	0	lncRNA	38746-1_{1..282}	n346134|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1684|NULL|-1.4023200|-0.2422026	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346134|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1684|NULL|-1.4023200|-0.2422026	chr18	 12437679	 12437960	+	NA	NA	NA	NA	SPIRE1	NA	chr18:12446511-12449122	inter
CUST_4656_PI429285431	0.9124388	A	0.9053276	A	1.00494127626868	0	lncRNA	4602-1_{1..208}	"transcript_id ""ENST00000438327.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438327.1"" | genecode_v17"	chr13	 78605071	 78605278	+	ENSG00000229249.1	ENST00000438327.1	LINC00446	LINC00446-001	NA	NA	NA	inter
CUST_39784_PI429285431	4.451195	P	5.043529	P	0.66326899834838	0	lncRNA	40698-1_{1..3000}	n406123|NR_003512|lncRNA|Homosapiens||RefGeneNoncode|NR_003512||3.2715800|-0.1246561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406123|NR_003512|lncRNA|Homosapiens||RefGeneNoncode|NR_003512||3.2715800|-0.1246561	chr11	  2150341	  2153340	-	NA	NA	NA	NA	IGF2	NA	chr11:2150347-2170833	inner
CUST_33740_PI429285431	1.1121837	A	1.1734965	A	0.958391620907126	0	lncRNA	35297-1_{1..524}	n340518|AF086551|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2980|NULL|-1.3711300|-0.4325796	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340518|AF086551|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2980|NULL|-1.3711300|-0.4325796	chr17	 15948895	 15949418	-	NA	NA	NA	NA	NCOR1	"hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90chr17:15938895-15959795"	NA	inner
CUST_36607_PI429285431	0.9053975	A	0.9007377	A	1.00323514906747	0	lncRNA	37800-1_{1..1013}	n345103|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_652|NULL|-1.7108900|-0.2928734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345103|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_652|NULL|-1.7108900|-0.2928734	chr10	 97639832	 97640844	+	NA	NA	NA	NA	ENTPD1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30chr10:97629832-97637023"	NA	inter
CUST_1067_PI429285431	3.6894796	A	3.4153004	A	1.20930587677583	0	lncRNA	1056-1_{1..2135}	"transcript_id ""ENST00000602909.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602909.1"" | genecode_v17"	chr2	128601127	128603261	-	ENSG00000270081.1	ENST00000602909.1	RP5-935K16.1	RP5-935K16.1-001	POLR2D	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-23.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.52;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-23.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50chr2:128603840-128613261"	NA	inter
CUST_440_PI429285431	1.5845152	A	0.92376333	A	1.58090630878407	0	lncRNA	432-1_{1..839}	"transcript_id ""ENST00000599864.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599864.1"" | genecode_v17"	chr1	147635156	147635994	+	ENSG00000232265.2	ENST00000599864.1	XXyac-YX155B6.5	XXyac-YX155B6.5-005	NA	NA	NA	inter
CUST_50069_PI429285431	0.93035775	A	0.921215	A	1.00635739437519	0	lncRNA	53802-1_{1..2118}	hg19_lincRNAsTranscripts_TCONS_l2_00027816 range=chr8:64664182-64699300 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027816 range=chr8:64664182-64699300 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 64664182	 64666299	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23355_PI429285431	3.622025	P	4.043685	P	0.746565113949159	0	lncRNA	24925-1_{1..553}	lnc-ZFP57-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZFP57-7:3	chr6	 29706112	 29706664	-	lnc-ZFP57-7	lnc-ZFP57-7:3	ENSG00000214922.3	HLA-F-AS1	NA	NA	NA	inter
CUST_2357_PI429285431	6.0651007	P	5.570353	P	1.40907431322125	0	lncRNA	2350-1_{1..602}	"transcript_id ""ENST00000509010.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509010.1"" | genecode_v17"	chr5	124731072	124731673	-	ENSG00000251554.1	ENST00000509010.1	RP11-395P13.6	RP11-395P13.6-001	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50"	NA	inter
CUST_19674_PI429285431	0.95485526	A	1.4705914	A	0.699435952181512	0	lncRNA	21331-1_{1..466}	lnc-RNF20-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF20-1:4	chr9	104243645	104244110	+	lnc-RNF20-1	lnc-RNF20-1:4	ENSG00000225376.1	RP11-490D19.6	C9orf125	NA	chr9:104237608-104249475	inner
LNCA_21_P0004031	0.96304667	A	0.9199986	A	1.03028828182612	0	lncRNA	ENST00000511323	NA	NA	NA	NA	XLOC_004471	NA	ENST00000511323	NA	NA	"BROAD Institute lincRNA (XLOC_004471), lincRNA [TCONS_00009461]"	chr5:91628339-91628398	hs|5q14.3	Agilent_HUMAN_G3V2	ENST00000511323	ENST00000511323	chr5	 91628339	 91628398	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51397_PI429285431	1.0230709	A	0.9257726	A	1.06976825651301	0	lncRNA	54980-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00009671 range=chr16:31711933-31724203 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009671 range=chr16:31711933-31724203 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 31711933	 31714932	+	NA	NA	NA	NA	ZNF720	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr16:31724550-31734203"	NA	inter
CUST_23398_PI429285431	4.720935	P	5.2082887	P	0.713332346468659	0	lncRNA	24966-1_{1..355}	lnc-PTGDR2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTGDR2-3:1	chr11	 60589170	 60589524	-	lnc-PTGDR2-3	lnc-PTGDR2-3:1	ENSG00000255845.1	RP11-804A23.1	NA	NA	NA	inter
CUST_37497_PI429285431	1.0372084	A	0.9163587	A	1.08737510219254	0	lncRNA	38599-1_{1..1732}	n345962|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1511|NULL|-1.3472100|-0.2208038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345962|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1511|NULL|-1.3472100|-0.2208038	chr17	 48128515	 48130246	-	NA	NA	NA	NA	ITGA3	NA	chr17:48133340-48141395	inter
CUST_31181_PI429285431	4.5477915	P	5.1926074	P	0.639574400494884	0	lncRNA	32976-1_{1..450}	n337618|AB306222|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000409720|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000409720|-0.8467420|-0.1346891	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337618|AB306222|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000409720|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000409720|-0.8467420|-0.1346891	chr7	142180474	142180923	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26375_PI429285431	6.615375	P	6.392311	P	1.16720987975717	0	lncRNA	27882-1_{1..614}	lnc-PLEKHA8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLEKHA8-2:1	chr7	 30198602	 30199215	+	lnc-PLEKHA8-2	lnc-PLEKHA8-2:1	ENSG00000251660.1	AC007036.5	C7orf41	NA	chr7:30188602-30202381	inner
CUST_19543_PI429285431	0.9047015	A	0.8974614	A	1.0050310684381	0	lncRNA	21199-1_{1..1028}	lnc-NSUN6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NSUN6-1:1	chr10	 18834394	 18835421	-	lnc-NSUN6-1	lnc-NSUN6-1:1	ENSG00000240291.1	RP11-499P20.2	NSUN6	"hg19_refFlat_CACNB2:range=chr10:18550199-188286535'pad=0,hg19_refFlat_CACNB2:range=chr10:18550199-188286535'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CACNB2:range=chr10:18629856-188286535'pad=0,hg19_refFlat_CACNB2:range=chr10:18629856-188286535'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CACNB2:range=chr10:18429666-188286535'pad=0,hg19_refFlat_CACNB2:range=chr10:18429666-188286535'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CACNB2:range=chr10:18430109-188286535'pad=0,hg19_refFlat_CACNB2:range=chr10:18430109-188286535'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CACNB2:range=chr10:18689961-188286535'pad=0,hg19_refFlat_CACNB2:range=chr10:18689961-188286535'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70chr10:18834264-18844580"	NA	inner
CUST_20639_PI429285431	1.083119	A	1.3095355	A	0.854755377980386	0	lncRNA	22278-1_{1..762}	lnc-C10orf103-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf103-2:2	chr10	 75264564	 75265325	+	lnc-C10orf103-2	lnc-C10orf103-2:2	ENSG00000221817.2	RP11-137L10.6	PPP3CB	"hg19_refFlat_USP54:range=chr10:75258387-753354165'pad=0,hg19_refFlat_USP54:range=chr10:75258387-753354165'pad=0 3'pad=0 strand=- repeatMasking=none,-95.20chr10:75254564-75255782"	NA	inner
CUST_34180_PI429285431	0.9770407	A	0.96086377	A	1.01127609466105	0	lncRNA	35696-1_{1..610}	n341028|AF086502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3494|NULL|-0.7735890|-0.2116488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341028|AF086502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3494|NULL|-0.7735890|-0.2116488	chr11	 46698078	 46698687	+	NA	NA	NA	NA	ATG13	NA	chr11:46688078-46697569	inner
LNCA_21_P0001589	1.2950294	A	0.91401976	A	1.3022528911141	0	lncRNA	TCONS_00001703	NA	NA	NA	NA	XLOC_001061	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001061), lincRNA [TCONS_00001703]"	chr1:159748408-159748349	hs|1q23.2	Agilent_HUMAN_G3V2	TCONS_00001703	TCONS_00001703	chr1	159748349	159748408	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007967	0.9308636	A	0.91359043	A	1.01204481055025	0	lncRNA	ENST00000411690	NA	NA	NA	NA	XLOC_010496	NA	ENST00000411690	THC2755016	NA	"BROAD Institute lincRNA (XLOC_010496), lincRNA [TCONS_00021598]"	chr13:110707240-110707299	hs|13q34	Agilent_HUMAN_G3V2	ENST00000411690	ENST00000411690	chr13	110707240	110707299	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37505_PI429285431	1.3745317	A	1.4309151	A	0.961671853879559	0	lncRNA	38608-1_{1..2078}	n345977|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1526|NULL|-1.3550100|-0.0937694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345977|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1526|NULL|-1.3550100|-0.0937694	chr8	 12425978	 12428055	-	NA	NA	NA	NA	LONRF1	NA	chr8:12485941-12533139	inter
CUST_34228_PI429285431	1.7820772	A	2.5607195	A	0.582915108393092	0	lncRNA	35738-1_{1..1683}	n341088|CR626472|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3554|NULL|-1.1824400|-0.3818143	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341088|CR626472|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3554|NULL|-1.1824400|-0.3818143	chr11	 83212281	 83213963	-	NA	NA	NA	NA	DLG2	NA	chr11:83202281-83223964	inner
CUST_35577_PI429285431	0.905631	A	1.048621	A	0.905640260415998	0	lncRNA	36992-1_{1..1668}	n342709|AK097647|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5211|NULL|-0.9488760|-0.1520182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342709|AK097647|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5211|NULL|-0.9488760|-0.1520182	chr5	157117239	157118906	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010024	2.1261625	A	2.4006362	A	0.826751865007389	0	lncRNA	TCONS_00028347	NA	NA	NA	NA	XLOC_013696	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013696), lincRNA [TCONS_00028347]"	chr20:23979134-23979075	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028347	TCONS_00028347	chr20	 23979075	 23979134	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44125_PI429285431	10.015718	P	9.127207	P	1.85126445451762	0	lncRNA	48790-2_{3001..3605}	"gi|224809303|ref|NR_027299.1| Homo sapiens xeroderma pigmentosum, complementation group C (XPC), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224809303|ref|NR_027299.1| Homo sapiens xeroderma pigmentosum, complementation group C (XPC), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_027299.1	NA	NA	NA	NA	NA	Unknown
CUST_5108_PI429285431	0.9075204	A	0.9080601	A	0.999625978430165	0	lncRNA	5048-1_{1..1435}	"transcript_id ""ENST00000569908.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569908.1"" | genecode_v17"	chr15	 24803305	 24804739	+	ENSG00000259905.1	ENST00000569908.1	PWRN1	PWRN1-009	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.30"	NA	inter
CUST_44289_PI429285431	5.930951	P	5.5687604	P	1.28537614224656	0	lncRNA	48922-1_{1..768}	"gi|239735504|ref|NR_027767.1| Homo sapiens TRAF2 and NCK interacting kinase (TNIK), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239735504|ref|NR_027767.1| Homo sapiens TRAF2 and NCK interacting kinase (TNIK), transcript variant 9, non-coding RNA"	Chr3	171064723	171065490	-	23043	NR_027767.1	NA	NA	NA	NA	NA	inter
CUST_17227_PI429285431	0.9289243	A	0.90727097	A	1.01512214447647	0	lncRNA	18943-1_{1..3000}	lnc-C3orf79-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C3orf79-2:1	chr3	153104036	153107035	+	lnc-C3orf79-2	lnc-C3orf79-2:1	XLOC_002882	linc-C3orf79-2	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20"	NA	inter
LNCA_21_P0010594	1.7853072	A	0.9092529	A	1.83534884198408	0	lncRNA	TCONS_l2_00000969	NA	NA	NA	NA	XLOC_l2_000727	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000727), lincRNA [TCONS_l2_00000969]"	chr1:741090-741031	hs|1p36.33	Agilent_HUMAN_G3V2	TCONS_l2_00000969	TCONS_l2_00000969	chr1	   741031	   741090	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005714	9.112839	P	9.092165	P	1.014433293266	0	lncRNA	TCONS_00014746	NA	NA	NA	NA	XLOC_006830	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006830), lincRNA [TCONS_00014746]"	chr8:69901765-69901824	hs|8q13.2	Agilent_HUMAN_G3V2	TCONS_00014746	TCONS_00014746	chr8	 69901765	 69901824	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20404_PI429285431	1.2299411	A	0.8950522	A	1.26128027559773	0	lncRNA	22046-1_{1..429}	lnc-LRRC10-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC10-1:2	chr12	 69747294	 69747722	-	lnc-LRRC10-1	lnc-LRRC10-1:2	ENSG00000257764.1	RP11-1143G9.4	LYZ	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.64;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_LYZ:range=chr12:69742189-697469995'pad=0,hg19_refFlat_LYZ:range=chr12:69742189-697469995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr12:69742134-69748013"	NA	inner
CUST_18455_PI429285431	5.340496	P	5.6932516	P	0.783086943998219	0	lncRNA	20178-1_{1..403}	lnc-C20orf62-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C20orf62-2:1	chr20	 43020076	 43020478	-	lnc-C20orf62-2	lnc-C20orf62-2:1	ENSG00000233376	RP5-881L22.6	HNF4A	NA	chr20:43010076-43030177	inner
CUST_1715_PI429285431	0.89342666	A	0.88972044	A	1.00257225853832	0	lncRNA	1700-1_{1..408}	"transcript_id ""ENST00000515188.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515188.1"" | genecode_v17"	chr4	 25610333	 25610740	+	ENSG00000248545.1	ENST00000515188.1	RP11-302F12.3	RP11-302F12.3-001	SLC34A2	NA	chr4:25624399-25631087	inter
CUST_36874_PI429285431	1.5618563	A	2.814743	A	0.419607770557888	0	lncRNA	38033-1_{1..523}	n345343|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_892|NULL|-1.3006000|-0.1455008	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345343|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_892|NULL|-1.3006000|-0.1455008	chr17	 29887989	 29888511	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6654_PI429285431	4.8047843	P	4.3397093	P	1.38038911249298	0	lncRNA	6600-1_{1..287}	"transcript_id ""ENST00000432334.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432334.1"" | genecode_v17"	chr20	 19738352	 19738638	+	ENSG00000233895.1	ENST00000432334.1	RP1-122P22.2	RP1-122P22.2-001	NA	NA	NA	inter
CUST_44354_PI429285431	3.2166276	P	3.4020247	P	0.879406986936768	0	lncRNA	48975-1_{1..1593}	"gi|379056384|ref|NR_046416.1| Homo sapiens ubiquitin specific peptidase 17-like family member 9, pseudogene (USP17L9P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|379056384|ref|NR_046416.1| Homo sapiens ubiquitin specific peptidase 17-like family member 9, pseudogene (USP17L9P), non-coding RNA"	Chr4	  9360108	  9361700	+	391627	NR_046416.1	NA	NA	NA	NA	NA	inter
CUST_6361_PI429285431	0.8988919	A	0.893106	A	1.00401853300952	0	lncRNA	6286-1_{1..396}	"transcript_id ""ENST00000585520.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585520.1"" | genecode_v17"	chr19	 16176547	 16176942	+	ENSG00000267517.1	ENST00000585520.1	CTD-2231E14.4	CTD-2231E14.4-001	TPM4	NA	chr19:16166547-16187122	inter
CUST_40141_PI429285431	4.1449175	P	3.5806208	P	1.47866649777968	0	lncRNA	40979-1_{1..845}	n407756|NR_027275|lncRNA|Homosapiens||RefGeneNoncode|NR_027275||2.0448400|-0.1644294	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n407756|NR_027275|lncRNA|Homosapiens||RefGeneNoncode|NR_027275||2.0448400|-0.1644294	chr16	  2787076	  2787920	-	NA	NA	NA	NA	SRRM2	NA	chr16:2802330-2812601	inner
CUST_2617_PI429285431	1.7061566	A	1.9508858	A	0.843974198812613	0	lncRNA	2604-1_{1..283}	"transcript_id ""ENST00000446525.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446525.1"" | genecode_v17"	chr6	115954706	115954988	-	ENSG00000228777.1	ENST00000446525.1	RP11-282C5.1	RP11-282C5.1-001	NA	NA	NA	inter
LNCA_21_P0009874	0.9225711	A	0.9069722	A	1.0108709980761	0	lncRNA	ENST00000448825	NA	NA	NA	NA	XLOC_013638	NA	ENST00000448825	NA	NA	"BROAD Institute lincRNA (XLOC_013638), lincRNA [TCONS_00027990]"	chr20:4411935-4411876	hs|20p13	Agilent_HUMAN_G3V2	ENST00000448825	ENST00000448825	chr20	  4411876	  4411935	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8406_PI429285431	2.044682	A	2.140134	A	0.935978956921438	0	lncRNA	9983-1_{1..1598}	lnc-DES-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DES-1:1	chr2	220267311	220268908	+	lnc-DES-1	lnc-DES-1:1	ENSG00000229525	AC053503.4	NA	NA	NA	inter
LNCA_21_P0014490	0.922413	A	0.9070645	A	1.01069556243269	0	lncRNA	XR_110064	XR_110064	XR_110064	NA	NA	LOC728095	uncharacterized LOC728095	ENST00000508470	THC2621954	NA	"PREDICTED: Homo sapiens hypothetical LOC728095 (LOC728095), miscRNA [XR_110064]"	chr5:168464944-168465003	hs|5q34	Agilent_HUMAN_G3V2	XR_110064	XR_110064	chr5	168464944	168465003	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_546_PI429285431	8.422116	P	8.226902	P	1.14489397413032	0	lncRNA	538-1_{1..445}	"transcript_id ""ENST00000435021.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435021.1"" | genecode_v17"	chr1	204633000	204633444	+	ENSG00000228153.1	ENST00000435021.1	RP11-23I7.1	RP11-23I7.1-001	LRRN2	NA	chr1:204623000-204643741	inner
CUST_22234_PI429285431	0.91615313	A	0.90309435	A	1.00909274666593	0	lncRNA	23834-1_{1..569}	lnc-WDFY2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDFY2-1:1	chr13	 52387293	 52387861	+	lnc-WDFY2-1	lnc-WDFY2-1:1	ENSG00000231856.1	RP11-327P2.5	DHRS12	NA	chr13:52377293-52378293	inter
CUST_6026_PI429285431	0.9075862	A	0.9006467	A	1.00482168193664	0	lncRNA	5952-1_{1..699}	"transcript_id ""ENST00000575820.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000575820.1"" | genecode_v17"	chr18	    11103	    11801	+	ENSG00000262352.1	ENST00000575820.1	AP005530.1	AP005530.1-002	LOC100652790	NA	chr18:11264-12387	inter
CUST_33449_PI429285431	0.9148911	A	0.91885626	A	0.997255334027431	0	lncRNA	35027-1_{1..3000}	n340184|BX538341|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2645|NULL|-0.9569270|-0.2985598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340184|BX538341|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2645|NULL|-0.9569270|-0.2985598	chr4	 96083658	 96086657	-	NA	NA	NA	NA	UNC5C	NA	chr4:96083655-96098750	inner
CUST_6840_PI429285431	1.8187034	A	2.2168624	A	0.758825991361046	0	lncRNA	6788-1_{1..276}	"transcript_id ""ENST00000433303.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433303.1"" | genecode_v17"	chr21	 29535921	 29536196	-	ENSG00000236532.1	ENST00000433303.1	AL035610.2	AL035610.2-002	NA	NA	NA	inter
CUST_31589_PI429285431	1.1548285	A	0.92137426	A	1.17564642851509	0	lncRNA	33346-1_{1..1713}	n338095|AK096897|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|482|NULL|-1.1450700|-0.3604519	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338095|AK096897|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|482|NULL|-1.1450700|-0.3604519	chr15	 87457673	 87459385	+	NA	NA	NA	NA	AGBL1	NA	chr15:87447673-87469386	inner
CUST_7812_PI429285431	1.2678946	A	0.89973354	A	1.29070657467728	0	lncRNA	9436-1_{1..1557}	lnc-SLC15A4-15:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SLC15A4-15:2	chr12	127544632	127546188	-	lnc-SLC15A4-15	lnc-SLC15A4-15:2	ENSG00000249345	ENST00000512624	NA	NA	NA	inter
LNCA_21_P0013273	1.7728965	A	2.189564	A	0.749153105710413	0	lncRNA	TCONS_l2_00026242	NA	NA	NA	NA	XLOC_l2_013628	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013628), lincRNA [TCONS_l2_00026242]"	chr7:141156535-141156594	hs|7q34	Agilent_HUMAN_G3V2	TCONS_l2_00026242	TCONS_l2_00026242	chr7	141156535	141156594	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13103_PI429285431	2.1983922	A	2.7548113	A	0.679987862405678	0	lncRNA	14727-1_{1..749}	lnc-TTC33-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC33-1:1	chr5	 40312970	 40313718	-	lnc-TTC33-1	lnc-TTC33-1:1	XLOC_004797	linc-DAB2	NA	NA	NA	inter
CUST_22731_PI429285431	4.7230935	P	4.76852	P	0.969003310781817	0	lncRNA	24315-1_{1..964}	lnc-GINS1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GINS1-1:2	chr20	 25657572	 25658535	+	lnc-GINS1-1	lnc-GINS1-1:2	ENSG00000213742.2	RP4-694B14.5	ZNF337	"hg19_refFlat_ZNF337:range=chr20:25655668-256670535'pad=0,hg19_refFlat_ZNF337:range=chr20:25655668-256670535'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr20:25650496-25668184"	NA	inner
CUST_51556_PI429285431	0.9097472	A	0.8977225	A	1.00836971877791	0	lncRNA	55121-1_{1..2954}	hg19_lincRNAsTranscripts_TCONS_l2_00011116 range=chr17:16878448-16883971 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011116 range=chr17:16878448-16883971 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 16878448	 16881401	-	NA	NA	NA	NA	TNFRSF13B	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10chr17:16868448-16875402"	NA	inter
CUST_11043_PI429285431	7.8373575	P	8.199221	P	0.778158798248286	0	lncRNA	12590-1_{1..423}	lnc-ANGPTL2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANGPTL2-2:4	chr9	129374725	129375147	-	lnc-ANGPTL2-2	lnc-ANGPTL2-2:4	XLOC_007855	linc-MAPKAP1-3	LMX1B	NA	chr9:129376722-129384798	inter
CUST_9851_PI429285431	3.081305	P	3.4037967	P	0.799687532002731	0	lncRNA	11371-1_{1..766}	lnc-RFC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RFC2-1:1	chr7	 73703392	 73704157	-	lnc-RFC2-1	lnc-RFC2-1:1	XLOC_006495	linc-RFC2-2	CLIP2	NA	chr7:73703805-73713578	inter
CUST_2970_PI429285431	0.91025865	A	0.92738557	A	0.988198711645774	0	lncRNA	2949-1_{1..445}	"transcript_id ""ENST00000521498.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521498.1"" | genecode_v17"	chr8	  1920987	  1921431	-	ENSG00000253764.1	ENST00000521498.1	RP11-439C15.4	RP11-439C15.4-001	KBTBD11	NA	chr8:1922044-1932803	inner
CUST_45831_PI429285431	11.244727	P	11.86484	P	0.650619965505567	0	lncRNA	50165-1_{1..3000}	"gi|338753356|ref|NR_040008.1| Homo sapiens calpain 1, (mu/I) large subunit (CAPN1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338753356|ref|NR_040008.1| Homo sapiens calpain 1, (mu/I) large subunit (CAPN1), transcript variant 4, non-coding RNA"	Chr11	 64949304	 64952303	+	823	NR_040008.1	NA	NA	NA	NA	NA	inter
CUST_2629_PI429285431	0.9099025	A	0.9024431	A	1.00518385198511	0	lncRNA	2616-1_{1..1533}	"transcript_id ""ENST00000456749.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456749.1"" | genecode_v17"	chr6	134797768	134799300	+	ENSG00000236700.1	ENST00000456749.1	RP11-557H15.2	RP11-557H15.2-002	NA	NA	NA	inter
CUST_11246_PI429285431	0.8994941	A	1.1509478	A	0.840049531176928	0	lncRNA	12804-1_{1..455}	lnc-IGSF11-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGSF11-2:6	chr3	117407566	117408020	-	lnc-IGSF11-2	lnc-IGSF11-2:6	XLOC_003222	linc-LSAMP-2	NA	NA	NA	inter
CUST_31991_PI429285431	0.92186695	A	1.0464742	A	0.91725371645863	0	lncRNA	33713-1_{1..467}	n338550|CR597432|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|954|NULL|-1.0062900|-0.2239149	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338550|CR597432|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|954|NULL|-1.0062900|-0.2239149	chr1	228405268	228405734	+	NA	NA	NA	NA	OBSCN	NA	chr1:228395861-228415735	inner
CUST_49327_PI429285431	5.3314238	P	4.328289	P	2.00435048038262	0	lncRNA	53142-1_{1..773}	hg19_lincRNAsTranscripts_TCONS_l2_00022932 range=chr5:66985557-66992889 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022932 range=chr5:66985557-66992889 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 66985557	 66986329	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36184_PI429285431	0.9145571	A	0.9158712	A	0.999089550001361	0	lncRNA	37449-1_{1..3000}	n344737|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_286|NULL|-1.3158900|-0.3715000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344737|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_286|NULL|-1.3158900|-0.3715000	chr13	 83133840	 83136839	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
CUST_23313_PI429285431	1.3637661	A	0.91929746	A	1.36081282228523	0	lncRNA	24884-1_{1..542}	lnc-CS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CS-1:1	chr12	 56663666	 56664207	-	lnc-CS-1	lnc-CS-1:1	ENSG00000258260.1	RP11-977G19.14	CS	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_COQ10A:range=chr12:56661180-566641015'pad=0,hg19_refFlat_COQ10A:range=chr12:56661180-566641015'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.60;hg19_refFlat_COQ10A:range=chr12:56660903-566641015'pad=0,hg19_refFlat_COQ10A:range=chr12:56660903-566641015'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.60chr12:56665483-56673888"	NA	inner
CUST_43359_PI429285431	6.159416	P	6.0542817	P	1.07559451253144	0	lncRNA	48177-1_{1..766}	"gi|410170378|ref|XR_171028.1| PREDICTED: Homo sapiens uncharacterized LOC101060082, transcript variant 1 (LOC101060082), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|410170378|ref|XR_171028.1| PREDICTED: Homo sapiens uncharacterized LOC101060082, transcript variant 1 (LOC101060082), misc_RNA"	NA	NA	NA	NA	NA	XR_171028.1	NA	NA	NA	NA	NA	Unknown
CUST_31077_PI429285431	6.446959	P	6.480882	P	0.976760659566138	0	lncRNA	32868-1_{1..356}	n337319|DQ335649|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391846|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391846|1.2168900|-0.1456558	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337319|DQ335649|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391846|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391846|1.2168900|-0.1456558	chr11	  6292006	  6292361	+	NA	NA	NA	NA	CCKBR	NA	chr11:6282006-6293356	inner
LNCA_33_P3259457	6.261547	P	6.461117	P	0.870810072425426	0	lncRNA	ENST00000395215	XR_109175	XR_109175	NA	Hs.635230	NA	NA	ENST00000395215	NA	NA	"PREDICTED: Homo sapiens golgin-like (LOC441728), miscRNA [XR_109175]"	chr15:76075252-76075311	hs|15q24.2	Agilent_HUMAN_G3V2	ENST00000395215	ENST00000395215	chr15	 76075252	 76075311	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30260_PI429285431	2.801226	A	3.0707889	A	0.829570846666131	0	lncRNA	32035-1_{1..475}	n335137|AY243318|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251170|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251170|0.3584060|-0.2512706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335137|AY243318|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251170|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251170|0.3584060|-0.2512706	chr18	 55862682	 55863156	+	NA	NA	NA	NA	NEDD4L	NA	chr18:55852682-55929306	inner
CUST_35511_PI429285431	0.92249954	A	0.9091238	A	1.00931446862735	0	lncRNA	36918-1_{1..1507}	n342614|AK098632|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5115|NULL|-1.0392400|-0.2845740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342614|AK098632|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5115|NULL|-1.0392400|-0.2845740	chr4	103698193	103699699	+	NA	NA	NA	NA	UBE2D3	"hg19_refFlat_UBE2D3:range=chr4:103718572-1037476655'pad=0,hg19_refFlat_UBE2D3:range=chr4:103718572-1037476655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_UBE2D3:range=chr4:103720086-1037476655'pad=0,hg19_refFlat_UBE2D3:range=chr4:103720086-1037476655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_UBE2D3:range=chr4:103718572-1037899015'pad=0,hg19_refFlat_UBE2D3:range=chr4:103718572-1037899015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80chr4:103717133-103730732"	NA	inner
CUST_27244_PI429285431	3.17442	A	3.4520755	P	0.824930509592563	0	lncRNA	28793-1_{1..244}	n324386|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042291|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042291|-0.7451800|-0.3406104	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324386|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042291|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042291|-0.7451800|-0.3406104	chr6	134123015	134123258	-	NA	NA	NA	NA	TCF21	NA	chr6:134210259-134216675	inter
CUST_6413_PI429285431	1.470318	A	0.95471036	A	1.42959613590805	0	lncRNA	6352-1_{1..2254}	"transcript_id ""ENST00000586954.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586954.1"" | genecode_v17"	chr19	 28266665	 28268918	-	ENSG00000261824.2	ENST00000586954.1	LINC00662	LINC00662-006	NA	NA	NA	inter
CUST_39908_PI429285431	6.4967227	P	6.8777018	P	0.767916259401363	0	lncRNA	40790-2_{3001..4234}	n406641|NR_024170|lncRNA|Homosapiens||RefGeneNoncode|NR_024170||2.2617500|-0.4031734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406641|NR_024170|lncRNA|Homosapiens||RefGeneNoncode|NR_024170||2.2617500|-0.4031734	chr4	100802494	100803727	-	NA	NA	NA	NA	LAMTOR3	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40chr4:100799495-100815703"	NA	inner
CUST_25730_PI429285431	1.3305713	A	0.9258649	A	1.3238194751103	0	lncRNA	27257-1_{1..750}	lnc-MRPS16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPS16-1:1	chr10	 75003103	 75003852	-	lnc-MRPS16-1	lnc-MRPS16-1:1	ENSG00000244365.1	RP11-152N13.12	FAM149B1	"hg19_refFlat_FAM149B1:range=chr10:74928098-750007775'pad=0,hg19_refFlat_FAM149B1:range=chr10:74928098-750007775'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80chr10:74993103-75001939"	NA	inner
CUST_28296_PI429285431	3.1404335	P	3.2952707	P	0.898233727776198	0	lncRNA	29939-1_{1..520}	n325599|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000104668|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000104668|-1.1128900|-0.1102699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325599|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000104668|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000104668|-1.1128900|-0.1102699	chr14	100610053	100610572	-	NA	NA	NA	NA	EVL	NA	chr14:100600053-100610573	inner
CUST_8306_PI429285431	5.6007977	P	6.2741976	P	0.627027272757469	0	lncRNA	9890-2_{3001..3706}	lnc-SLC15A3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC15A3-2:1	chr11	 60788758	 60789463	-	lnc-SLC15A3-2	lnc-SLC15A3-2:1	ENSG00000251217	ENST00000505761	CD6	"hg19_refFlat_CD6:range=chr11:60739338-607867905'pad=0,hg19_refFlat_CD6:range=chr11:60739338-607867905'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70chr11:60775758-60787849"	NA	inner
CUST_4691_PI429285431	0.9228373	A	0.91464376	A	1.00569548711392	0	lncRNA	4638-1_{1..664}	"transcript_id ""ENST00000432575.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432575.1"" | genecode_v17"	chr13	109962483	109963146	+	ENSG00000236053.1	ENST00000432575.1	RP11-259F4.1	RP11-259F4.1-001	NA	NA	NA	inter
CUST_21516_PI429285431	0.9724331	A	0.94729817	A	1.01757485771372	0	lncRNA	23134-1_{1..263}	lnc-ATMIN-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATMIN-3:1	chr16	 81110029	 81110291	+	lnc-ATMIN-3	lnc-ATMIN-3:1	ENSG00000261838.1	RP11-303E16.6	C16orf46	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70chr16:81100029-81110872"	NA	inner
CUST_6390_PI429285431	0.91210276	A	1.0927234	A	0.882323343661483	0	lncRNA	6319-1_{1..565}	"transcript_id ""ENST00000593824.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593824.1"" | genecode_v17"	chr19	 21971682	 21972246	-	ENSG00000268184.1	ENST00000593824.1	RP11-420K14.8	RP11-420K14.8-002	ZNF43	NA	chr19:21983282-21986662	inter
CUST_45654_PI429285431	4.901492	P	2.2754219	A	6.1734206570958	0	lncRNA	50031-1_{1..2508}	"gi|325652055|ref|NR_028035.2| Homo sapiens Fas (TNF receptor superfamily, member 6) (FAS), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|325652055|ref|NR_028035.2| Homo sapiens Fas (TNF receptor superfamily, member 6) (FAS), transcript variant 6, non-coding RNA"	Chr10	 90750288	 90752795	+	355	NR_028035.2	NA	NA	NA	NA	NA	inter
CUST_50312_PI429285431	1.4206511	A	0.91793036	A	1.41688310633395	0	lncRNA	54031-1_{1..335}	hg19_lincRNAsTranscripts_TCONS_l2_00029540 range=chr9:106082154-106087292 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029540 range=chr9:106082154-106087292 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	106082154	106082488	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22664_PI429285431	10.684177	P	11.617067	P	0.523808000391612	0	lncRNA	24248-1_{1..690}	lnc-TIGIT-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIGIT-2:5	chr3	114107243	114107932	+	lnc-TIGIT-2	lnc-TIGIT-2:5	ENSG00000241560.1	ZBTB20-AS1	ZBTB20	NA	chr3:114097243-114117825	inner
CUST_22638_PI429285431	1.7698334	A	1.9635979	A	0.874321329619751	0	lncRNA	24224-1_{1..575}	lnc-ANKRD13C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD13C-1:1	chr1	 70825980	 70826554	-	lnc-ANKRD13C-1	lnc-ANKRD13C-1:1	ENSG00000226088.1	RP11-180O5.2	ANKRD13C	NA	chr1:70815980-70820417	inner
CUST_40232_PI429285431	0.9156417	A	1.1629641	A	0.842458543706547	0	lncRNA	41052-3_{6001..6509}	n408092|NR_028024|lncRNA|Homosapiens||RefGeneNoncode|NR_028024||5.6456600|-0.3727325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408092|NR_028024|lncRNA|Homosapiens||RefGeneNoncode|NR_028024||5.6456600|-0.3727325	chr11	 85374607	 85375115	-	NA	NA	NA	NA	TMEM126A	NA	chr11:85358963-85367597	inter
CUST_34698_PI429285431	0.91124046	A	0.9181505	A	0.995221777457117	0	lncRNA	36148-1_{1..639}	n341604|AF086468|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4075|NULL|-1.2946300|-0.3969669	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341604|AF086468|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4075|NULL|-1.2946300|-0.3969669	chr8	126964460	126965098	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22312_PI429285431	1.9859632	A	2.7500072	A	0.588843435696271	0	lncRNA	23911-1_{1..558}	lnc-ZMYND11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZMYND11-1:1	chr10	   486908	   487465	+	lnc-ZMYND11-1	lnc-ZMYND11-1:1	ENSG00000233021.2	RP11-490E15.2	DIP2C	NA	chr10:476908-497110	inner
CUST_13791_PI429285431	0.9221599	A	0.91344076	A	1.00606194699134	0	lncRNA	15433-1_{1..3000}	lnc-TFAP2A-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TFAP2A-2:4	chr6	 10434746	 10437745	-	lnc-TFAP2A-2	lnc-TFAP2A-2:4	XLOC_005602	linc-TFAP2A-2	NA	NA	NA	inter
CUST_16634_PI429285431	4.5202417	P	4.841683	P	0.80026998194911	0	lncRNA	18336-1_{1..515}	lnc-RAD23B-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAD23B-8:1	chr9	110382457	110382971	+	lnc-RAD23B-8	lnc-RAD23B-8:1	XLOC_007510	linc-ACTL7A-6	NA	NA	NA	inter
CUST_27432_PI429285431	0.97406715	A	0.9702344	A	1.00266019190421	0	lncRNA	28997-1_{1..388}	n324602|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039765|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039765|0.3486470|-0.1910081	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324602|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039765|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039765|0.3486470|-0.1910081	chr6	  6703509	  6703896	-	NA	NA	NA	NA	NA	"hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.11;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30"	NA	inter
CUST_5242_PI429285431	1.7277129	A	1.632324	A	1.06835335984302	0	lncRNA	5183-1_{1..343}	"transcript_id ""ENST00000563660.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563660.1"" | genecode_v17"	chr15	 75647551	 75647893	-	ENSG00000260591.1	ENST00000563660.1	RP11-817O13.6	RP11-817O13.6-001	NEIL1	NA	chr15:75639331-75647588	inter
CUST_42850_PI429285431	6.8563647	P	6.826159	P	1.02115771237765	0	lncRNA	45894-1_{1..128}	ENST00000390846 ncrna:snoRNA chromosome:GRCh37:10:36727589:36727716:1 gene:ENSG00000212148 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390846 ncrna:snoRNA chromosome:GRCh37:10:36727589:36727716:1 gene:ENSG00000212148 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	 36727589	 36727716	+	ENSG00000212148	ENST00000390846	NA	NA	NA	NA	NA	inter
CUST_45793_PI429285431	1.0101242	A	0.9926971	A	1.01215279759141	0	lncRNA	50133-1_{1..640}	"gi|384229044|ref|NR_047569.1| Homo sapiens uncharacterized LOC100507384 (LOC100507384), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|384229044|ref|NR_047569.1| Homo sapiens uncharacterized LOC100507384 (LOC100507384), non-coding RNA"	Chr11	 45743858	 45744497	+	100507384	NR_047569.1	NA	NA	NA	NA	NA	inter
CUST_20368_PI429285431	1.2230945	A	1.1742343	A	1.0344473366712	0	lncRNA	22009-1_{1..519}	lnc-ACOT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACOT1-1:1	chr14	 73996856	 73997374	+	lnc-ACOT1-1	lnc-ACOT1-1:1	ENSG00000258695.2	RP3-414A15.2	HEATR4	"hg19_refFlat_HEATR4:range=chr14:73945311-739898565'pad=0,hg19_refFlat_HEATR4:range=chr14:73945311-739898565'pad=0 3'pad=0 strand=- repeatMasking=none,-96.20chr14:73986856-74007314"	NA	inner
CUST_14012_PI429285431	0.909085	A	0.9027014	A	1.0044345781103	0	lncRNA	15660-1_{1..890}	lnc-ZNF724P-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF724P-2:6	chr19	 23206251	 23207140	-	lnc-ZNF724P-2	lnc-ZNF724P-2:6	XLOC_013272	linc-ZNF99-4	NA	NA	NA	inter
CUST_2282_PI429285431	8.479899	P	8.542099	P	0.957802429407994	0	lncRNA	2274-1_{1..582}	"transcript_id ""ENST00000513815.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513815.1"" | genecode_v17"	chr5	101945095	101945676	-	ENSG00000250682.1	ENST00000513815.1	LINC00491	LINC00491-003	NA	NA	NA	inter
CUST_7503_PI429285431	0.97487366	A	0.9628	A	1.00840393988338	0	lncRNA	9144-1_{1..1268}	lnc-ZNF682-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF682-1:1	chr19	 20331132	 20332399	-	lnc-ZNF682-1	lnc-ZNF682-1:1	ENSG00000251268	XLOC_013256	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80"	NA	inter
CUST_1876_PI429285431	4.3441405	P	4.0204844	P	1.25149809934381	0	lncRNA	1866-1_{1..645}	"transcript_id ""ENST00000504050.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504050.1"" | genecode_v17"	chr4	128018253	128018897	-	ENSG00000248491.1	ENST00000504050.1	RP11-125O18.1	RP11-125O18.1-001	NA	NA	NA	inter
CUST_3403_PI429285431	1.2074419	A	1.0843251	A	1.08908518365772	0	lncRNA	3376-1_{1..3000}	"transcript_id ""ENST00000592873.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592873.1"" | genecode_v17"	chr9	 42469548	 42472547	+	ENSG00000223839.3	ENST00000592873.1	FAM95B1	FAM95B1-002	CBWD7	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20chr9:42478004-42484239"	NA	inter
CUST_18224_PI429285431	2.4542103	A	2.2293425	A	1.16867015366676	0	lncRNA	19959-1_{1..269}	lnc-CETN3-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CETN3-3:4	chr5	 89456346	 89456614	-	lnc-CETN3-3	lnc-CETN3-3:4	ENSG00000248555	RP11-61G23.1	NA	NA	NA	inter
CUST_15346_PI429285431	1.212087	A	1.2318356	A	0.986404577618799	0	lncRNA	17027-1_{1..1166}	lnc-AJAP1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AJAP1-4:4	chr1	  4484054	  4485219	+	lnc-AJAP1-4	lnc-AJAP1-4:4	XLOC_000033	linc-AJAP1-3	NA	NA	NA	inter
CUST_3611_PI429285431	1.1339706	A	1.1350443	A	0.999256044744273	0	lncRNA	3581-1_{1..402}	"transcript_id ""ENST00000418270.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418270.1"" | genecode_v17"	chr10	  8093504	  8093905	+	ENSG00000232638.1	ENST00000418270.1	RP11-379F12.4	RP11-379F12.4-001	GATA3	NA	chr10:8096667-8105047	inter
CUST_6204_PI429285431	2.4516766	A	1.6519959	A	1.74071582543132	0	lncRNA	6130-1_{1..678}	"transcript_id ""ENST00000593282.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593282.1"" | genecode_v17"	chr18	 53754468	 53755145	-	ENSG00000267712.1	ENST00000593282.1	RP11-456O19.4	RP11-456O19.4-005	NA	NA	NA	inter
CUST_28140_PI429285431	0.9231525	A	1.1712823	A	0.841987196188067	0	lncRNA	29766-1_{1..487}	n325417|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323661|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323661|-1.1509500|-0.1449196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325417|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323661|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323661|-1.1509500|-0.1449196	chr2	 15859321	 15859807	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43999_PI429285431	3.2302825	P	3.7270033	P	0.708715840416085	0	lncRNA	48693-3_{6001..6261}	"gi|365733615|ref|NR_045683.1| Homo sapiens myosin IIIB (MYO3B), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|365733615|ref|NR_045683.1| Homo sapiens myosin IIIB (MYO3B), transcript variant 4, non-coding RNA"	Chr2	171040655	171040915	+	140469	NR_045683.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10"	NA	inter
CUST_45403_PI429285431	2.912648	A	2.9342942	A	0.985107996700576	0	lncRNA	49832-1_{1..3000}	"gi|388890253|ref|NR_051962.1| Homo sapiens inversin (INVS), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388890253|ref|NR_051962.1| Homo sapiens inversin (INVS), transcript variant 3, non-coding RNA"	Chr9	102861502	102864501	+	27130	NR_051962.1	NA	NA	NA	NA	NA	inter
CUST_35331_PI429285431	8.775539	P	8.722062	P	1.03776299667953	0	lncRNA	36740-1_{1..316}	n342369|AF333388|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4861|NULL|-0.7785040|-0.0529400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342369|AF333388|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4861|NULL|-0.7785040|-0.0529400	chr1	237167402	237167717	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4528_PI429285431	5.3874245	P	5.781235	P	0.761116657585593	0	lncRNA	4476-1_{1..409}	"transcript_id ""ENST00000537998.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537998.1"" | genecode_v17"	chr12	131462107	131462515	+	ENSG00000256204.1	ENST00000537998.1	RP11-243M5.1	RP11-243M5.1-001	GPR133	NA	chr12:131452107-131473313	inner
LNCA_21_P0009401	0.92519957	A	0.92165333	A	1.00246108977928	0	lncRNA	TCONS_00026020	NA	NA	NA	NA	XLOC_012360	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012360), lincRNA [TCONS_00026020]"	chr17:4063019-4062960	hs|17p13.2	Agilent_HUMAN_G3V2	TCONS_00026020	TCONS_00026020	chr17	  4062960	  4063019	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46768_PI429285431	5.9438963	P	6.0482755	P	0.930205129139767	0	lncRNA	50918-1_{1..552}	"gi|343962627|ref|NR_045026.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 29, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|343962627|ref|NR_045026.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 29, non-coding RNA"	Chr17	 16342301	 16342852	+	125144	NR_045026.1	NA	NA	NA	NA	NA	inter
CUST_8553_PI429285431	0.9304327	A	0.9219929	A	1.0058671683786	0	lncRNA	10112-1_{1..2882}	lnc-LARP1B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LARP1B-2:1	chr4	129433874	129436755	+	lnc-LARP1B-2	lnc-LARP1B-2:1	ENSG00000246458	AC108062.1	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.11;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30"	NA	inter
CUST_2433_PI429285431	0.9238908	A	0.92202234	A	1.0012959568082	0	lncRNA	2425-1_{1..513}	"transcript_id ""ENST00000521373.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521373.1"" | genecode_v17"	chr5	173116462	173116974	+	ENSG00000253428.1	ENST00000521373.1	CTB-43E15.2	CTB-43E15.2-001	NA	NA	NA	inter
LNCA_21_P0014558	9.316311	P	9.848613	P	0.691450557699629	0	lncRNA	ENST00000555156	XR_110298	XR_110298	NA	NA	LOC100506767	NA	ENST00000555156	THC2728788	NA	"PREDICTED: Homo sapiens hypothetical LOC100506767 (LOC100506767), miscRNA [XR_110298]"	chr14:62600936-62600877	hs|14q23.2	Agilent_HUMAN_G3V2	ENST00000555156	ENST00000555156	chr14	 62600877	 62600936	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43805_PI429285431	5.27101	P	4.291918	P	1.97122437394355	0	lncRNA	48532-1_{1..3000}	"gi|392871560|ref|NR_052013.2| Homo sapiens neuroblastoma amplified sequence (NBAS), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392871560|ref|NR_052013.2| Homo sapiens neuroblastoma amplified sequence (NBAS), transcript variant 2, non-coding RNA"	Chr2	 15307032	 15310031	-	51594	NR_052013.2	NA	NA	NA	NA	NA	inter
CUST_28445_PI429285431	1.0011406	A	1.2713891	A	0.829176710250815	0	lncRNA	30105-1_{1..448}	n325771|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000125971|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000125971|-0.4494020|-0.3351638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325771|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000125971|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000125971|-0.4494020|-0.3351638	chr13	 29891655	 29892102	-	NA	NA	NA	NA	MTUS2	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30chr13:29881655-29904374"	NA	inner
CUST_33479_PI429285431	0.9238112	A	0.9233824	A	1.00029726568571	0	lncRNA	35052-2_{3001..3764}	n340214|BC045668|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2675|NULL|-0.9369550|-0.2738103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n340214|BC045668|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2675|NULL|-0.9369550|-0.2738103	chr4	123543137	123543900	+	NA	NA	NA	NA	IL21	"hg19_refFlat_IL21:range=chr4:123533865-1235421665'pad=0,hg19_refFlat_IL21:range=chr4:123533865-1235421665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_IL21:range=chr4:123533982-1235421665'pad=0,hg19_refFlat_IL21:range=chr4:123533982-1235421665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr4:123533783-123542211"	NA	inner
CUST_19525_PI429285431	0.92150813	A	0.9276462	A	0.995754452013982	0	lncRNA	21181-1_{1..248}	lnc-CTNNA1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTNNA1-2:1	chr5	138349270	138349517	+	lnc-CTNNA1-2	lnc-CTNNA1-2:1	ENSG00000249593.2	CTB-46B19.2	SIL1	NA	chr5:138339270-138359377	inner
CUST_21344_PI429285431	4.750604	P	4.7721853	P	0.985152313028856	0	lncRNA	22967-1_{1..656}	lnc-AGER-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AGER-1:1	chr6	 32153101	 32153756	-	lnc-AGER-1	lnc-AGER-1:1	ENSG00000259382.1	XXbac-BPG300A18.13	NOTCH4	NA	chr6:32162620-32163659	inner
CUST_2478_PI429285431	0.94674015	A	0.9284985	A	1.01272442348943	0	lncRNA	2470-1_{1..539}	"transcript_id ""ENST00000420389.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420389.1"" | genecode_v17"	chr6	 10423373	 10423911	-	ENSG00000228478.1	ENST00000420389.1	RP1-290I10.3	RP1-290I10.3-001	TFAP2A	NA	chr6:10413373-10419797	inter
CUST_44939_PI429285431	3.1099796	A	3.3610454	P	0.840275427166358	0	lncRNA	49451-1_{1..1204}	"gi|336088633|ref|NR_038407.1| Homo sapiens long intergenic non-protein coding RNA 525 (LINC00525), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336088633|ref|NR_038407.1| Homo sapiens long intergenic non-protein coding RNA 525 (LINC00525), non-coding RNA"	Chr7	 47801074	 47802277	+	84847	NR_038407.1	NA	NA	NA	NA	NA	inter
CUST_14260_PI429285431	0.9228103	A	0.9117535	A	1.00769343328569	0	lncRNA	15917-1_{1..573}	lnc-SLC10A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC10A2-1:1	chr13	105330383	105330955	-	lnc-SLC10A2-1	lnc-SLC10A2-1:1	XLOC_010711	linc-SLC10A2-1	NA	NA	NA	inter
CUST_24719_PI429285431	4.128313	P	4.176341	P	0.967257556780006	0	lncRNA	26265-1_{1..551}	lnc-NSMAF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-NSMAF-1:1	chr8	 59905360	 59905910	-	lnc-NSMAF-1	lnc-NSMAF-1:1	ENSG00000254048.1	RP11-328K2.1	TOX	NA	chr8:59895360-59915497	inner
CUST_52032_PI429285431	0.9217571	A	0.91116357	A	1.00736990046824	0	lncRNA	55562-1_{1..879}	hg19_lincRNAsTranscripts_TCONS_l2_00017160 range=chr21:19102855-19110831 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017160 range=chr21:19102855-19110831 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 19102855	 19103733	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21350_PI429285431	3.2626145	P	3.830349	P	0.674675416651684	0	lncRNA	22974-1_{1..675}	lnc-CPT2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPT2-5:1	chr1	 53755113	 53755787	+	lnc-CPT2-5	lnc-CPT2-5:1	ENSG00000228838.1	RP4-784A16.2	LRP8	"hg19_refFlat_LRP8:range=chr1:53712690-537935845'pad=0,hg19_refFlat_LRP8:range=chr1:53712690-537935845'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40chr1:53745113-53765378"	NA	inner
CUST_30099_PI429285431	5.025053	P	4.983222	P	1.02941948824328	0	lncRNA	31871-1_{1..311}	n334639|U94344|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000222690|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000222690|1.2459700|-0.1031544	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334639|U94344|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000222690|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000222690|1.2459700|-0.1031544	chr17	 77807761	 77808071	-	NA	NA	NA	NA	CBX4	NA	chr17:77806955-77813213	inner
CUST_26631_PI429285431	0.9126501	A	2.588624	A	0.3129547763214	0	lncRNA	28134-1_{1..1032}	lnc-C6orf100-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C6orf100-3:1	chr6	 28954454	 28955485	+	lnc-C6orf100-3	lnc-C6orf100-3:1	ENSG00000227214.2	HCG15	ZNF311	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00chr6:28962594-28965261"	NA	inter
CUST_44232_PI429285431	0.92304564	A	0.9093673	A	1.00952619084306	0	lncRNA	48881-1_{1..1299}	"gi|310119269|ref|XR_108479.1| PREDICTED: Homo sapiens uncharacterized LOC100132481 (LOC100132481), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119269|ref|XR_108479.1| PREDICTED: Homo sapiens uncharacterized LOC100132481 (LOC100132481), misc_RNA"	NA	NA	NA	NA	NA	XR_108479.1	NA	NA	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10"	NA	Unknown
CUST_28136_PI429285431	5.7383137	P	5.7674403	P	0.980013413007047	0	lncRNA	29762-1_{1..642}	n325413|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323736|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323736|-1.3457300|-0.2138135	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325413|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323736|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323736|-1.3457300|-0.2138135	chr2	 16142794	 16143435	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6511_PI429285431	1.2509291	A	0.8972073	A	1.27785292653257	0	lncRNA	6453-1_{1..553}	"transcript_id ""ENST00000587395.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587395.1"" | genecode_v17"	chr19	 38324103	 38324655	-	ENSG00000225868.2	ENST00000587395.1	AC016582.2	AC016582.2-003	NA	NA	NA	inter
CUST_10309_PI429285431	7.447793	P	6.792165	P	1.57530152704358	0	lncRNA	11837-1_{1..1138}	lnc-FRAT1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRAT1-1:2	chr10	 99097832	 99098969	+	lnc-FRAT1-1	lnc-FRAT1-1:2	XLOC_008573	linc-PGAM1-2	FRAT2	NA	chr10:99092254-99094458	inter
CUST_46022_PI429285431	4.468004	P	4.2493086	P	1.16368081747075	0	lncRNA	50304-1_{1..1886}	"gi|312261186|ref|NR_037144.1| Homo sapiens pleckstrin homology domain containing, family A member 8 pseudogene 1 (PLEKHA8P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|312261186|ref|NR_037144.1| Homo sapiens pleckstrin homology domain containing, family A member 8 pseudogene 1 (PLEKHA8P1), non-coding RNA"	Chr12	 45566817	 45568702	-	51054	NR_037144.1	NA	NA	NA	NA	NA	inter
CUST_2016_PI429285431	0.9209965	A	0.8946009	A	1.01846443361761	0	lncRNA	2007-1_{1..451}	"transcript_id ""ENST00000514767.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514767.1"" | genecode_v17"	chr4	188454036	188454486	-	ENSG00000250590.1	ENST00000514767.1	RP11-565A3.2	RP11-565A3.2-003	NA	NA	NA	inter
CUST_42598_PI429285431	6.8938293	P	7.2182155	P	0.7986380976509	0	lncRNA	45451-1_{1..70}	ENST00000365161 ncrna:snoRNA chromosome:GRCh37:1:45243515:45243584:1 gene:ENSG00000202031 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365161 ncrna:snoRNA chromosome:GRCh37:1:45243515:45243584:1 gene:ENSG00000202031 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 45243515	 45243584	+	ENSG00000202031	ENST00000365161	NA	NA	BEST4	NA	chr1:45245957-45253426	inter
CUST_18248_PI429285431	0.91421187	A	0.90875435	A	1.00379002866386	0	lncRNA	19982-1_{1..685}	lnc-CD180-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CD180-2:1	chr5	 66771243	 66771927	-	lnc-CD180-2	lnc-CD180-2:1	ENSG00000250978	RP11-357D18.1	NA	NA	NA	inter
CUST_13842_PI429285431	4.8666787	P	5.3046956	P	0.738148555980293	0	lncRNA	15485-1_{1..300}	lnc-SLC15A4-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC15A4-2:3	chr12	128602670	128602969	-	lnc-SLC15A4-2	lnc-SLC15A4-2:3	XLOC_010257	linc-DHX37-11	NA	NA	NA	inter
CUST_19084_PI429285431	8.842927	P	9.179546	P	0.791894969069628	0	lncRNA	20774-1_{1..759}	lnc-CYP11B2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CYP11B2-1:1	chr8	144099577	144100335	-	lnc-CYP11B2-1	lnc-CYP11B2-1:1	ENSG00000247317	RP11-273G15.2	LY6E	NA	chr8:144089577-144103827	inter
CUST_13797_PI429285431	3.1595147	P	3.5819209	P	0.746179070587915	0	lncRNA	15440-1_{1..349}	lnc-HRCT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HRCT1-2:1	chr9	 35914316	 35914664	+	lnc-HRCT1-2	lnc-HRCT1-2:1	XLOC_007341	linc-RECK-3	HRCT1	NA	chr9:35906189-35907138	inter
CUST_15342_PI429285431	6.3138514	P	6.598625	P	0.820870416684399	0	lncRNA	17021-1_{1..391}	lnc-TERF1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TERF1-2:1	chr8	 74005780	 74006170	+	lnc-TERF1-2	lnc-TERF1-2:1	XLOC_006843	linc-RDH10	C8orf84	NA	chr8:73995780-74005507	inter
CUST_40196_PI429285431	3.9110975	P	3.4969056	P	1.33255206264206	0	lncRNA	41028-1_{1..1323}	n408016|NR_027775|lncRNA|Homosapiens||RefGeneNoncode|NR_027775||2.6876700|-0.2838427	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408016|NR_027775|lncRNA|Homosapiens||RefGeneNoncode|NR_027775||2.6876700|-0.2838427	chr7	 74306893	 74308215	+	NA	NA	NA	NA	STAG3L2	NA	chr7:74299267-74306731	inter
CUST_52054_PI429285431	0.9035192	A	1.3755056	A	0.720971232150883	0	lncRNA	55585-3_{6001..7025}	hg19_lincRNAsTranscripts_TCONS_l2_00017085 range=chr21:44851213-44859330 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017085 range=chr21:44851213-44859330 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr21	 44857213	 44858237	+	NA	NA	NA	NA	SIK1	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr21:44841213-44847002"	NA	inter
LNCA_21_P0001632	1.9612381	A	2.4718697	A	0.701915077957272	0	lncRNA	TCONS_00001839	NA	NA	NA	NA	XLOC_001224	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001224), lincRNA [TCONS_00001839]"	chr1:224284579-224284520	hs|1q42.11	Agilent_HUMAN_G3V2	TCONS_00001839	TCONS_00001839	chr1	224284520	224284579	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31939_PI429285431	2.3707995	A	2.05524	A	1.2444941942946	0	lncRNA	33667-1_{1..518}	n338496|AF088044|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|893|NULL|-1.0277900|-0.2287060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338496|AF088044|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|893|NULL|-1.0277900|-0.2287060	chr1	206677280	206677797	+	NA	NA	NA	NA	RASSF5	NA	chr1:206680879-206687789	inter
CUST_40995_PI429285431	10.3293915	P	11.23589	P	0.53347830234724	0	lncRNA	41663-1_{1..693}	n411169|NR_038997|lncRNA|Homosapiens||RefGeneNoncode|NR_038997||1.0531300|-0.1501126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n411169|NR_038997|lncRNA|Homosapiens||RefGeneNoncode|NR_038997||1.0531300|-0.1501126	chr15	 79484048	 79484740	-	NA	NA	NA	NA	ANKRD34C	NA	chr15:79575146-79586287	inter
CUST_2541_PI429285431	0.92732745	A	0.9137012	A	1.00948974151146	0	lncRNA	2529-1_{1..562}	"transcript_id ""ENST00000454135.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454135.1"" | genecode_v17"	chr6	 50566304	 50566865	-	ENSG00000230472.1	ENST00000454135.1	RP1-28O17.1	RP1-28O17.1-001	NA	NA	NA	inter
CUST_24555_PI429285431	3.9093876	P	4.3119392	P	0.756519093683522	0	lncRNA	26104-1_{1..693}	lnc-C1orf31-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf31-4:1	chr1	234745167	234745859	+	lnc-C1orf31-4	lnc-C1orf31-4:1	ENSG00000228830.1	RP4-781K5.2	IRF2BP2	"hg19_refFlat_IRF2BP2:range=chr1:234742883-2347452405'pad=0,hg19_refFlat_IRF2BP2:range=chr1:234742883-2347452405'pad=0 3'pad=0 strand=- repeatMasking=none,-103.60chr1:234740015-234745271"	NA	inner
CUST_50702_PI429285431	0.9055256	A	0.8919452	A	1.00945765963147	0	lncRNA	54373-1_{1..492}	hg19_lincRNAsTranscripts_TCONS_l2_00003595 range=chr10:61496941-61499105 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003595 range=chr10:61496941-61499105 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 61496941	 61497432	-	NA	NA	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
CUST_48551_PI429285431	0.9246888	A	0.90803266	A	1.01161205901794	0	lncRNA	52400-1_{1..1109}	hg19_lincRNAsTranscripts_TCONS_l2_00013947 range=chr2:122548055-122567536 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013947 range=chr2:122548055-122567536 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	122548055	122549163	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47957_PI429285431	3.1301253	A	3.049807	A	1.05725127485598	0	lncRNA	51848-1_{1..1918}	"gi|410172586|ref|XR_171871.1| PREDICTED: Homo sapiens chromosome 10 open reading frame 85 (C10orf85), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172586|ref|XR_171871.1| PREDICTED: Homo sapiens chromosome 10 open reading frame 85 (C10orf85), misc_RNA"	NA	NA	NA	NA	NA	XR_171871.1	NA	NA	NA	NA	NA	Unknown
CUST_29565_PI429285431	1.970992	A	2.3944983	A	0.745610302635074	0	lncRNA	31325-1_{1..531}	n333062|AF258677|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075243|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075243|1.8149700|-0.1823851	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333062|AF258677|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075243|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075243|1.8149700|-0.1823851	chr11	   624213	   624743	-	NA	NA	NA	NA	CDHR5	NA	chr11:616565-625067	inner
CUST_40890_PI429285431	3.3331454	P	1.9280461	A	2.64836009985893	0	lncRNA	41580-1_{1..3000}	n410702|NR_037962|lncRNA|Homosapiens||RefGeneNoncode|NR_037962||2.0514000|-0.3344415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410702|NR_037962|lncRNA|Homosapiens||RefGeneNoncode|NR_037962||2.0514000|-0.3344415	chr1	228780393	228783392	+	NA	NA	NA	NA	RHOU	NA	chr1:228780394-228882416	inter
CUST_50642_PI429285431	6.0577807	P	6.0331235	P	1.01723795660526	0	lncRNA	54322-1_{1..775}	hg19_lincRNAsTranscripts_TCONS_l2_00002951 range=chr10:30964483-30980403 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002951 range=chr10:30964483-30980403 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 30964483	 30965257	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13206_PI429285431	7.5116143	P	8.543802	P	0.488968116011428	0	lncRNA	14834-1_{1..388}	lnc-CSMD1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CSMD1-3:1	chr8	  2415813	  2416200	-	lnc-CSMD1-3	lnc-CSMD1-3:1	XLOC_006978	linc-ERICH1-1	NA	NA	NA	inter
CUST_39881_PI429285431	0.92335224	A	1.1924167	A	0.829857506506459	0	lncRNA	40770-3_{6001..6814}	n406543|NR_024052_6|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_6||-1.2453200|-0.3296761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406543|NR_024052_6|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_6||-1.2453200|-0.3296761	chr6	  1773196	  1774009	-	NA	NA	NA	NA	GMDS	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10chr6:1757196-1816933"	NA	inner
CUST_38937_PI429285431	0.91611075	A	0.897804	A	1.01277012257731	0	lncRNA	39925-1_{1..1410}	n385078|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003sqr.1||2.2381100|-0.3129433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n385078|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003sqr.1||2.2381100|-0.3129433	chr7	  6703604	  6705013	+	NA	NA	NA	NA	ZNF12	NA	chr7:6712856-6724110	inter
CUST_20676_PI429285431	0.9136556	A	0.91323894	A	1.00028884841292	0	lncRNA	22313-1_{1..381}	lnc-KLHL20-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL20-1:1	chr1	173605966	173606346	+	lnc-KLHL20-1	lnc-KLHL20-1:1	ENSG00000232113.1	RP11-360D2.1	ANKRD45	NA	chr1:173595966-173616273	inner
CUST_17198_PI429285431	1.5150512	A	1.5950847	A	0.946035679114765	0	lncRNA	18911-1_{1..431}	lnc-ZNF680-11:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF680-11:1	chr7	 62452942	 62453372	-	lnc-ZNF680-11	lnc-ZNF680-11:1	XLOC_006462	linc-ZNF479-9	NA	NA	NA	inter
CUST_29161_PI429285431	0.9084038	A	0.90269244	A	1.00396665953246	0	lncRNA	30904-1_{1..490}	n326672|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000009330|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000009330|-0.8087780|-0.2099761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326672|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000009330|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000009330|-0.8087780|-0.2099761	chr1	 25242784	 25243273	-	NA	NA	NA	NA	RUNX3	NA	chr1:25232784-25291501	inner
CUST_28429_PI429285431	0.90663815	A	0.90185606	A	1.00332019186777	0	lncRNA	30088-1_{1..702}	n325753|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044629|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044629|-1.1318700|-0.3370157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325753|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044629|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044629|-1.1318700|-0.3370157	chr13	 39923130	 39923831	-	NA	NA	NA	NA	LHFP	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00chr13:39917029-39963143"	NA	inner
CUST_3385_PI429285431	1.5740478	A	1.5569721	A	1.01190629561363	0	lncRNA	3359-1_{1..2084}	"transcript_id ""ENST00000562922.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562922.1"" | genecode_v17"	chr9	 27829274	 27831357	+	ENSG00000260390.1	ENST00000562922.1	RP11-575I8.1	RP11-575I8.1-001	NA	NA	NA	inter
CUST_50782_PI429285431	1.088863	A	0.89394325	A	1.14466048701809	0	lncRNA	54438-1_{1..260}	hg19_lincRNAsTranscripts_TCONS_l2_00004869 range=chr11:177835-180409 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004869 range=chr11:177835-180409 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	   177835	   178094	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51423_PI429285431	0.90272254	A	0.89273316	A	1.00694813765959	0	lncRNA	55002-1_{1..512}	hg19_lincRNAsTranscripts_TCONS_l2_00010001 range=chr16:11479211-11484301 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010001 range=chr16:11479211-11484301 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 11479211	 11479722	-	NA	NA	NA	NA	LOC388210	NA	chr16:11469211-11484311	inter
CUST_50159_PI429285431	0.9005226	A	0.9015816	A	0.999266226479343	0	lncRNA	53884-1_{1..803}	hg19_lincRNAsTranscripts_TCONS_l2_00028611 range=chr9:6645889-6670845 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028611 range=chr9:6645889-6670845 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	  6645889	  6646691	+	NA	NA	NA	NA	GLDC	"hg19_refFlat_RNF2:range=chr1:185056686-1850694335'pad=0,hg19_refFlat_RNF2:range=chr1:185056686-1850694335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90chr9:6635889-6645692"	NA	inter
CUST_2107_PI429285431	1.0311549	A	0.9104623	A	1.08725670064328	0	lncRNA	2098-1_{1..417}	"transcript_id ""ENST00000514876.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514876.1"" | genecode_v17"	chr5	 20611959	 20612375	+	ENSG00000251629.2	ENST00000514876.1	RP11-774D14.1	RP11-774D14.1-003	NA	NA	NA	inter
CUST_37026_PI429285431	1.0548776	A	0.9068984	A	1.10801637296653	0	lncRNA	38164-1_{1..699}	n345481|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1030|NULL|-1.5242400|-0.2192929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345481|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1030|NULL|-1.5242400|-0.2192929	chr1	204338237	204338935	-	NA	NA	NA	NA	PLEKHA6	NA	chr1:204328237-204329044	inter
LNCA_21_P0003139	0.9223472	A	1.6516292	A	0.6032040415472	0	lncRNA	TCONS_00006566	NA	NA	NA	NA	XLOC_003194	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003194), lincRNA [TCONS_00006566]"	chr3:102383441-102383382	hs|3q12.3	Agilent_HUMAN_G3V2	TCONS_00006566	TCONS_00006566	chr3	102383382	102383441	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17144_PI429285431	6.528613	P	5.8478265	P	1.60301341622175	0	lncRNA	18853-1_{1..555}	lnc-MEIS1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MEIS1-3:3	chr2	 66922335	 66922889	+	lnc-MEIS1-3	lnc-MEIS1-3:3	XLOC_001508	linc-ETAA1-6	NA	NA	NA	inter
LNCA_21_P0006209	0.92262346	A	0.9087014	A	1.00969674837589	0	lncRNA	TCONS_00016127	NA	NA	NA	NA	XLOC_007512	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007512), lincRNA [TCONS_00016127]"	chr9:110769578-110769637	hs|9q31.2	Agilent_HUMAN_G3V2	TCONS_00016127	TCONS_00016127	chr9	110769578	110769637	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012643	0.9227605	A	0.90898347	A	1.00959525155563	0	lncRNA	TCONS_l2_00020936	NA	NA	NA	NA	XLOC_l2_010976	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010976), lincRNA [TCONS_l2_00020936]"	chr4:186007876-186008753	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_l2_00020936	TCONS_l2_00020936	chr4	186007876	186008753	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35543_PI429285431	2.232922	A	2.1978683	A	1.02459495980031	0	lncRNA	36958-1_{1..1098}	n342666|CR597207|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5168|NULL|5.8762000|-0.2889836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342666|CR597207|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5168|NULL|5.8762000|-0.2889836	chr5	 93905256	 93906353	+	NA	NA	NA	NA	KIAA0825	NA	chr5:93895256-93916354	inner
CUST_45735_PI429285431	7.2244635	P	7.182927	P	1.02920937239059	0	lncRNA	50085-30_{87001..90000}	"gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	Chr11	  2716558	  2719557	-	10984	NR_002728.3	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.02;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0,hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_28384_PI429285431	0.90931	A	1.179022	A	0.829485116405451	0	lncRNA	30036-1_{1..948}	n325699|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045235|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045235|-1.2160000|-0.4178741	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325699|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045235|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045235|-1.2160000|-0.4178741	chr13	 70487273	 70488220	+	NA	NA	NA	NA	KLHL1	NA	chr13:70477273-70650550	inner
CUST_49883_PI429285431	7.5593967	P	7.2843337	P	1.21004692872445	0	lncRNA	53634-1_{1..407}	hg19_lincRNAsTranscripts_TCONS_l2_00026054 range=chr7:76671248-76673082 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026054 range=chr7:76671248-76673082 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 76671248	 76671654	+	NA	NA	NA	NA	LOC100505767	NA	chr7:76682095-76683082	inter
LNCA_21_P0013815	2.0970647	A	0.9119152	A	2.27386956514233	0	lncRNA	TCONS_l2_00030495	NA	NA	NA	NA	XLOC_l2_015738	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015738), lincRNA [TCONS_l2_00030495]"	chrX:53188147-53188088	hs|Xp11.22	Agilent_HUMAN_G3V2	TCONS_l2_00030495	TCONS_l2_00030495	chrX	 53188088	 53188147	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40427_PI429285431	2.8229249	A	1.0321732	A	3.4599512242681	0	lncRNA	41209-2_{3001..4802}	n409301|NR_033652|lncRNA|Homosapiens||RefGeneNoncode|NR_033652||-0.8071330|-0.3030733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409301|NR_033652|lncRNA|Homosapiens||RefGeneNoncode|NR_033652||-0.8071330|-0.3030733	chr8	 72758357	 72760158	+	NA	NA	NA	NA	TRPA1	"hg19_refFlat_TRPA1:range=chr8:72935141-729876445'pad=0,hg19_refFlat_TRPA1:range=chr8:72935141-729876445'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MSC:range=chr8:72754896-727564135'pad=0,hg19_refFlat_MSC:range=chr8:72754896-727564135'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50chr8:72933486-72978547"	NA	inter
CUST_40221_PI429285431	6.551637	P	6.6248803	P	0.950498793021408	0	lncRNA	41044-2_{3001..3333}	n408051|NR_027856|lncRNA|Homosapiens||RefGeneNoncode|NR_027856||3.2288500|-0.3474185	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408051|NR_027856|lncRNA|Homosapiens||RefGeneNoncode|NR_027856||3.2288500|-0.3474185	chr2	201720731	201721063	-	NA	NA	NA	NA	CLK1	NA	chr2:201709028-201729467	inner
CUST_16359_PI429285431	0.919313	A	0.9090675	A	1.00712691587908	0	lncRNA	18057-1_{1..1187}	lnc-DMRTA1-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRTA1-7:3	chr9	 24591877	 24593063	+	lnc-DMRTA1-7	lnc-DMRTA1-7:3	XLOC_007304	linc-IFT74-3	NA	"hg19_refFlat_IZUMO3:range=chr9:24543227-245456475'pad=0,hg19_refFlat_IZUMO3:range=chr9:24543227-245456475'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60"	NA	inter
CUST_1838_PI429285431	0.92265046	A	0.91711503	A	1.0038442378977	0	lncRNA	1827-1_{1..521}	"transcript_id ""ENST00000504132.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504132.1"" | genecode_v17"	chr4	107354781	107355301	+	ENSG00000249613.1	ENST00000504132.1	RP13-612N21.1	RP13-612N21.1-001	NA	NA	NA	inter
CUST_26620_PI429285431	1.0279295	A	1.1392179	A	0.925760941040461	0	lncRNA	28123-1_{1..568}	lnc-PPP2R2A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PPP2R2A-2:1	chr8	 26299954	 26300521	+	lnc-PPP2R2A-2	lnc-PPP2R2A-2:1	ENSG00000254362.1	RP11-14I17.3	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_6714_PI429285431	5.7369514	P	5.951073	P	0.862070880848066	0	lncRNA	6662-1_{1..539}	"transcript_id ""ENST00000445003.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445003.1"" | genecode_v17"	chr20	 48884036	 48884574	+	ENSG00000224397.1	ENST00000445003.1	RP11-290F20.3	RP11-290F20.3-002	NA	NA	NA	inter
CUST_13543_PI429285431	0.9140773	A	0.9164688	A	0.998343711679635	0	lncRNA	15183-1_{1..473}	lnc-C22orf42-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C22orf42-2:1	chr22	 32517490	 32517962	-	lnc-C22orf42-2	lnc-C22orf42-2:1	XLOC_014347	linc-C22orf24-2	SLC5A1	NA	chr22:32507490-32509016	inter
LNCA_21_P0011671	7.4755864	P	8.03978	P	0.676333350035024	0	lncRNA	TCONS_l2_00012273	NA	NA	NA	NA	XLOC_l2_006578	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006578), lincRNA [TCONS_l2_00012273]"	chr19:7982063-7982368	hs|19p13.2	Agilent_HUMAN_G3V2	TCONS_l2_00012273	TCONS_l2_00012273	chr19	  7982063	  7982368	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26584_PI429285431	1.5038853	A	1.5271268	A	0.984019288294215	0	lncRNA	28087-1_{1..389}	lnc-CHN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHN2-1:1	chr7	 29121938	 29122326	+	lnc-CHN2-1	lnc-CHN2-1:1	ENSG00000229452.1	AC005162.4	CPVL	NA	chr7:29111938-29132143	inner
CUST_49606_PI429285431	0.9156632	A	0.9162047	A	0.999624731232672	0	lncRNA	53396-2_{3001..5598}	hg19_lincRNAsTranscripts_TCONS_l2_00024524 range=chr6:167604944-167614963 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024524 range=chr6:167604944-167614963 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	167607944	167610541	+	NA	NA	NA	NA	UNC93A	"hg19_refFlat_USP33:range=chr1:78163002-782111475'pad=0,hg19_refFlat_USP33:range=chr1:78163002-782111475'pad=0 3'pad=0 strand=- repeatMasking=none,-61.60;hg19_refFlat_USP33:range=chr1:78177420-782111475'pad=0,hg19_refFlat_USP33:range=chr1:78177420-782111475'pad=0 3'pad=0 strand=- repeatMasking=none,-61.60chr6:167622122-167624963"	NA	inter
CUST_47205_PI429285431	4.3617	P	4.8490167	P	0.713350641142531	0	lncRNA	51279-1_{1..2175}	"gi|168823572|ref|NR_015380.1| Homo sapiens A1BG antisense RNA 1 (A1BG-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|168823572|ref|NR_015380.1| Homo sapiens A1BG antisense RNA 1 (A1BG-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NR_015380.1	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_A1BG:range=chr19:58858388-588648035'pad=0,hg19_refFlat_A1BG:range=chr19:58858388-588648035'pad=0 3'pad=0 strand=- repeatMasking=none,-98.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40"	NA	Unknown
CUST_36504_PI429285431	2.2805858	A	1.8313794	A	1.3652890297779	0	lncRNA	37703-1_{1..322}	n345004|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_553|NULL|-1.3315100|-0.3670580	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345004|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_553|NULL|-1.3315100|-0.3670580	chr8	 66895310	 66895631	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22544_PI429285431	3.577496	P	3.7240982	P	0.903375567125549	0	lncRNA	24131-1_{1..581}	lnc-DENND1A-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DENND1A-4:1	chr9	126794569	126795149	-	lnc-DENND1A-4	lnc-DENND1A-4:1	ENSG00000234921.1	RP11-85O21.5	LHX2	"hg19_refFlat_LHX2:range=chr9:126774628-1267949865'pad=0,hg19_refFlat_LHX2:range=chr9:126774628-1267949865'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.00chr9:126784569-126795442"	NA	inner
CUST_40859_PI429285431	1.1058851	A	0.92411196	A	1.13427710882022	0	lncRNA	41558-2_{3001..5772}	n410641|NR_037882|lncRNA|Homosapiens||RefGeneNoncode|NR_037882||14.7387000|-0.1166168	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410641|NR_037882|lncRNA|Homosapiens||RefGeneNoncode|NR_037882||14.7387000|-0.1166168	chr20	 62292162	 62294933	+	NA	NA	NA	NA	STMN3	NA	chr20:62279162-62284780	inner
LNCA_21_P0009791	7.2402697	P	7.5886087	P	0.785487923468165	0	lncRNA	TCONS_00027580	NA	NA	NA	NA	XLOC_013095	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013095), lincRNA [TCONS_00027580]"	chr19:45250381-45250440	hs|19q13.32	Agilent_HUMAN_G3V2	TCONS_00027580	TCONS_00027580	chr19	 45250381	 45250440	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28182_PI429285431	1.8389128	A	2.1054273	A	0.831325574665993	0	lncRNA	29809-1_{1..411}	n325462|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322560|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322560|-0.8710400|-0.4025354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325462|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322560|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322560|-0.8710400|-0.4025354	chr2	  5868223	  5868633	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41622_PI429285431	5.165681	P	5.738539	P	0.672283664616713	0	lncRNA	42996-1_{1..119}	ENST00000362210 ncrna:miRNA chromosome:GRCh37:6:52013721:52013839:1 gene:ENSG00000199080 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362210 ncrna:miRNA chromosome:GRCh37:6:52013721:52013839:1 gene:ENSG00000199080 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 52013721	 52013839	+	ENSG00000199080	ENST00000362210	NA	NA	NA	NA	NA	inter
CUST_26934_PI429285431	0.9673346	A	0.9997765	A	0.977763936781125	0	lncRNA	28453-1_{1..1544}	n324012|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053397|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053397|-1.0381100|-0.2610594	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324012|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053397|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053397|-1.0381100|-0.2610594	chr9	101387888	101389431	-	NA	NA	NA	NA	GABBR2	NA	chr9:101377888-101471479	inner
CUST_12067_PI429285431	5.4234176	P	5.3309054	P	1.06622521080057	0	lncRNA	13655-1_{1..359}	lnc-MYO16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYO16-1:1	chr13	109959926	109960284	+	lnc-MYO16-1	lnc-MYO16-1:1	XLOC_010491	linc-COL4A2-7	NA	NA	NA	inter
CUST_50881_PI429285431	4.9714766	P	4.868004	P	1.07435635309469	0	lncRNA	54524-1_{1..676}	hg19_lincRNAsTranscripts_TCONS_l2_00006098 range=chr12:8384794-8391378 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006098 range=chr12:8384794-8391378 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  8384794	  8385469	-	NA	NA	NA	NA	FAM90A1	NA	chr12:8374794-8380214	inter
CUST_17276_PI429285431	0.9191119	A	0.9077806	A	1.0078851842494	0	lncRNA	18994-1_{1..1161}	lnc-RP11-168K9.2.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-168K9.2.1-2:3	chr11	126969169	126970329	+	lnc-RP11-168K9.2.1-2	lnc-RP11-168K9.2.1-2:3	XLOC_009323	linc-FLI1-4	NA	NA	NA	inter
CUST_45768_PI429285431	6.074559	P	6.1054296	P	0.978829440849284	0	lncRNA	50113-1_{1..633}	"gi|378548187|ref|NR_034094.2| Homo sapiens MRVI1 antisense RNA 1 (MRVI1-AS1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|378548187|ref|NR_034094.2| Homo sapiens MRVI1 antisense RNA 1 (MRVI1-AS1), transcript variant 4, non-coding RNA"	Chr11	 10562783	 10563415	+	100129827	NR_034094.2	NA	NA	NA	"hg19_refFlat_MRVI1:range=chr11:10597879-107151495'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-107151495'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_MRVI1:range=chr11:10597879-106737695'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-106737695'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_MRVI1:range=chr11:10597879-106555705'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-106555705'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_MRVI1:range=chr11:10597879-106479355'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-106479355'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50"	NA	inter
CUST_46938_PI429285431	4.504508	P	4.4366846	P	1.04813416577859	0	lncRNA	51047-1_{1..2183}	"gi|224451087|ref|NR_027058.1| Homo sapiens long intergenic non-protein coding RNA 338 (LINC00338), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224451087|ref|NR_027058.1| Homo sapiens long intergenic non-protein coding RNA 338 (LINC00338), non-coding RNA"	Chr17	 75084725	 75086907	+	654434	NR_027058.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60"	NA	inter
CUST_41431_PI429285431	10.229595	P	10.701177	P	0.721173355001068	0	lncRNA	42593-1_{1..83}	ENST00000585107 ncrna:miRNA chromosome:GRCh37:7:100802754:100802836:1 gene:ENSG00000264425 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585107 ncrna:miRNA chromosome:GRCh37:7:100802754:100802836:1 gene:ENSG00000264425 gene_biotype:miRNA transcript_biotype:miRNA	chr7	100802754	100802836	+	ENSG00000264425	ENST00000585107	NA	NA	AP1S1	NA	chr7:100797686-100804557	inter
CUST_44045_PI429285431	3.448159	P	2.7778661	A	1.59139602440617	0	lncRNA	48723-1_{1..3000}	"gi|299890813|ref|NR_033915.1| Homo sapiens origin recognition complex, subunit 2 (ORC2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299890813|ref|NR_033915.1| Homo sapiens origin recognition complex, subunit 2 (ORC2), transcript variant 2, non-coding RNA"	Chr2	201774894	201777893	-	4999	NR_033915.1	NA	NA	NA	NA	NA	inter
CUST_43515_PI429285431	2.3879845	A	0.91615635	A	2.77373151905514	0	lncRNA	48301-2_{3001..6000}	"gi|307574635|ref|NR_036634.1| Homo sapiens transforming growth factor, beta receptor III (TGFBR3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|307574635|ref|NR_036634.1| Homo sapiens transforming growth factor, beta receptor III (TGFBR3), transcript variant 4, non-coding RNA"	Chr1	 92148900	 92151899	-	7049	NR_036634.1	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	inter
CUST_6353_PI429285431	5.8721504	P	5.5573163	P	1.24386860874528	0	lncRNA	6277-1_{1..435}	"transcript_id ""ENST00000589333.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589333.1"" | genecode_v17"	chr19	 15945619	 15946053	+	ENSG00000214049.5	ENST00000589333.1	UCA1	UCA1-002	NA	NA	NA	inter
CUST_24365_PI429285431	7.314961	P	7.014909	P	1.23118878908715	0	lncRNA	25918-1_{1..573}	lnc-RHOB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RHOB-2:1	chr2	 20254046	 20254618	+	lnc-RHOB-2	lnc-RHOB-2:1	ENSG00000223734.2	RP11-644K8.1	LAPTM4A	NA	chr2:20244046-20251789	inter
LNCA_21_P0002515	1.0195081	A	0.9691573	A	1.03551668535866	0	lncRNA	TCONS_00004479	NA	NA	NA	NA	XLOC_002369	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002369), lincRNA [TCONS_00004479]"	chr2:161777550-161777491	hs|2q24.2	Agilent_HUMAN_G3V2	TCONS_00004479	TCONS_00004479	chr2	161777491	161777550	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42914_PI429285431	9.963846	P	10.166751	P	0.868799392822782	0	lncRNA	46015-1_{1..130}	ENST00000391156 ncrna:snoRNA chromosome:GRCh37:4:1112672:1112801:1 gene:ENSG00000212458 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391156 ncrna:snoRNA chromosome:GRCh37:4:1112672:1112801:1 gene:ENSG00000212458 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	  1112672	  1112801	+	ENSG00000212458	ENST00000391156	NA	NA	RNF212	NA	chr4:1102672-1107352	inter
CUST_3474_PI429285431	4.362746	P	4.9960046	P	0.644718550548922	0	lncRNA	3445-1_{1..291}	"transcript_id ""ENST00000429044.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429044.1"" | genecode_v17"	chr9	 93323311	 93323601	-	ENSG00000229613.1	ENST00000429044.1	RP11-555F9.2	RP11-555F9.2-003	NA	NA	NA	inter
CUST_32509_PI429285431	0.93056417	A	0.9316687	A	0.999234691142978	0	lncRNA	34176-1_{1..2654}	n339113|AK095139|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1543|NULL|-1.2637300|-0.3960342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339113|AK095139|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1543|NULL|-1.2637300|-0.3960342	chr2	207470895	207473548	+	NA	NA	NA	NA	ADAM23	NA	chr2:207460895-207482685	inner
CUST_46553_PI429285431	1.4150063	A	1.2367165	A	1.1315417373932	0	lncRNA	50738-1_{1..1365}	"gi|397139598|ref|XR_158885.1| PREDICTED: Homo sapiens uncharacterized LOC100996653 (LOC100996653), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139598|ref|XR_158885.1| PREDICTED: Homo sapiens uncharacterized LOC100996653 (LOC100996653), misc_RNA"	NA	NA	NA	NA	NA	XR_158885.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20"	NA	Unknown
CUST_11600_PI429285431	4.901644	P	4.990342	P	0.940371030196928	0	lncRNA	13180-1_{1..226}	lnc-C14orf79-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf79-2:10	chr14	105565381	105565606	+	lnc-C14orf79-2	lnc-C14orf79-2:10	XLOC_010952	linc-BTBD6-1	NA	NA	NA	inter
CUST_34977_PI429285431	4.2507753	P	4.0617104	P	1.14002455583191	0	lncRNA	36394-1_{1..3000}	n341902|AK023464|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4383|NULL|-1.1912200|-0.3390038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341902|AK023464|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4383|NULL|-1.1912200|-0.3390038	chr12	 46782638	 46785637	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43905_PI429285431	6.7256527	P	6.574644	P	1.11034552941445	0	lncRNA	48619-1_{1..802}	"gi|310118972|ref|XR_109920.1| PREDICTED: Homo sapiens uncharacterized LOC100506076, transcript variant 4 (LOC100506076), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118972|ref|XR_109920.1| PREDICTED: Homo sapiens uncharacterized LOC100506076, transcript variant 4 (LOC100506076), misc_RNA"	NA	NA	NA	NA	NA	XR_109920.1	NA	NA	NA	NA	NA	Unknown
CUST_45698_PI429285431	7.8001637	P	8.050319	P	0.840805901194232	0	lncRNA	50069-1_{1..3000}	"gi|375298721|ref|NR_046330.1| Homo sapiens tubulin, gamma complex associated protein 2 (TUBGCP2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375298721|ref|NR_046330.1| Homo sapiens tubulin, gamma complex associated protein 2 (TUBGCP2), transcript variant 4, non-coding RNA"	Chr10	135092134	135095133	-	10844	NR_046330.1	NA	NA	NA	"hg19_refFlat_ZNF511:range=chr10:135122448-1351263705'pad=0,hg19_refFlat_ZNF511:range=chr10:135122448-1351263705'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.70"	NA	inter
CUST_7502_PI429285431	0.9210504	A	0.9077836	A	1.0092382567019	0	lncRNA	9143-1_{1..1110}	lnc-MBL2-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MBL2-5:3	chr10	 54057560	 54058669	-	lnc-MBL2-5	lnc-MBL2-5:3	ENSG00000236671	RP11-573I11.2	PRKG1	NA	chr10:54047560-54055274	inner
CUST_22744_PI429285431	0.92252576	A	0.9102852	A	1.00852060511638	0	lncRNA	24327-1_{1..350}	lnc-CTSZ-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTSZ-1:1	chr20	 57476885	 57477234	-	lnc-CTSZ-1	lnc-CTSZ-1:1	ENSG00000234747.1	RP1-309F20.2	GNAS	NA	chr20:57466885-57486250	inner
CUST_48385_PI429285431	2.0590634	A	3.9040956	P	0.278349191917806	0	lncRNA	52238-1_{1..442}	hg19_lincRNAsTranscripts_TCONS_l2_00002131 range=chr1:111031151-111033892 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002131 range=chr1:111031151-111033892 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	111031151	111031592	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25063_PI429285431	0.9039064	A	0.9197821	A	0.98905612800033	0	lncRNA	26600-1_{1..560}	lnc-OBFC2A-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OBFC2A-4:1	chr2	192895308	192895867	+	lnc-OBFC2A-4	lnc-OBFC2A-4:1	ENSG00000232452.1	AC098617.1	TMEFF2	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr2:192885308-192905368"	NA	inner
CUST_14213_PI429285431	3.4830606	P	3.95141	P	0.722791076465396	0	lncRNA	15866-1_{1..215}	lnc-CACNG3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CACNG3-1:4	chr16	 24259153	 24259367	+	lnc-CACNG3-1	lnc-CACNG3-1:4	XLOC_011674	linc-CACNG3-2	CACNG3	NA	chr16:24266874-24269194	inter
CUST_22672_PI429285431	3.634407	P	3.8873665	P	0.839173194432499	0	lncRNA	24255-1_{1..461}	lnc-VWA7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VWA7-1:1	chr6	 31733316	 31733776	-	lnc-VWA7-1	lnc-VWA7-1:1	ENSG00000235663.1	SAPCD1-AS1	MSH5	"hg19_refFlat_SAPCD1:range=chr6_mcf_hap5:3110529-31120055'pad=0,hg19_refFlat_SAPCD1:range=chr6_mcf_hap5:3110529-31120055'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.40;hg19_refFlat_SAPCD1:range=chr6:31730832-317323085'pad=0,hg19_refFlat_SAPCD1:range=chr6:31730832-317323085'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.40;hg19_refFlat_SAPCD1:range=chr6_dbb_hap3:3016414-30178905'pad=0,hg19_refFlat_SAPCD1:range=chr6_dbb_hap3:3016414-30178905'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.40;hg19_refFlat_SAPCD1:range=chr6_cox_hap2:3240418-32418945'pad=0,hg19_refFlat_SAPCD1:range=chr6_cox_hap2:3240418-32418945'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.40;hg19_refFlat_SAPCD1:range=chr6_apd_hap1:3045583-30470595'pad=0,hg19_refFlat_SAPCD1:range=chr6_apd_hap1:3045583-30470595'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.40;hg19_refFlat_SAPCD1:range=chr6_ssto_hap7:3061645-30631215'pad=0,hg19_refFlat_SAPCD1:range=chr6_ssto_hap7:3061645-30631215'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.40chr6:31723316-31730455"	NA	inter
CUST_7388_PI429285431	0.9098526	A	0.90561974	A	1.00293830335051	0	lncRNA	9034-1_{1..1585}	lnc-ZNF681-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF681-2:1	chr19	 24140533	 24142117	-	lnc-ZNF681-2	lnc-ZNF681-2:1	ENSG00000104777	ENST00000300996	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF93:range=chr19:20011898-200456275'pad=0,hg19_refFlat_ZNF93:range=chr19:20011898-200456275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF735:range=chr7:63667581-636806685'pad=0,hg19_refFlat_ZNF735:range=chr7:63667581-636806685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ZNF506:range=chr19:19905361-199324125'pad=0,hg19_refFlat_ZNF506:range=chr19:19905361-199324125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF100:range=chr19:21909485-219502315'pad=0,hg19_refFlat_ZNF100:range=chr19:21909485-219502315'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF267:range=chr16:31885288-319278025'pad=0,hg19_refFlat_ZNF267:range=chr16:31885288-319278025'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF479:range=chr7:57187547-572000315'pad=0,hg19_refFlat_ZNF479:range=chr7:57187547-572000315'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF681:range=chr19:23926414-239415515'pad=0,hg19_refFlat_ZNF681:range=chr19:23926414-239415515'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF257:range=chr19:22235435-222722445'pad=0,hg19_refFlat_ZNF257:range=chr19:22235435-222722445'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF43:range=chr19:21990409-220347365'pad=0,hg19_refFlat_ZNF43:range=chr19:21990409-220347365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF626:range=chr19:20807096-208442525'pad=0,hg19_refFlat_ZNF626:range=chr19:20807096-208442525'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF43:range=chr19:21990409-220020085'pad=0,hg19_refFlat_ZNF43:range=chr19:21990409-220020085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF679:range=chr7:63709496-637272475'pad=0,hg19_refFlat_ZNF679:range=chr7:63709496-637272475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF43:range=chr19:21990409-220188405'pad=0,hg19_refFlat_ZNF43:range=chr19:21990409-220188405'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF675:range=chr19:23836028-238698355'pad=0,hg19_refFlat_ZNF675:range=chr19:23836028-238698355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF430:range=chr19:21203607-212408275'pad=0,hg19_refFlat_ZNF430:range=chr19:21203607-212408275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF138:range=chr7:64275311-642925805'pad=0,hg19_refFlat_ZNF138:range=chr7:64275311-642925805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF195:range=chr11:3383798-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3383798-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF766:range=chr19:52772867-527944515'pad=0,hg19_refFlat_ZNF766:range=chr19:52772867-527944515'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZNF682:range=chr19:20116814-201501545'pad=0,hg19_refFlat_ZNF682:range=chr19:20116814-201501545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF726:range=chr19:24097797-241167695'pad=0,hg19_refFlat_ZNF726:range=chr19:24097797-241167695'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ZNF138:range=chr7:64254947-642760085'pad=0,hg19_refFlat_ZNF138:range=chr7:64254947-642760085'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF492:range=chr19:22836202-228480675'pad=0,hg19_refFlat_ZNF492:range=chr19:22836202-228480675'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_ZNF737:range=chr19:20727398-207484465'pad=0,hg19_refFlat_ZNF737:range=chr19:20727398-207484465'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF92:range=chr7:64838911-648647885'pad=0,hg19_refFlat_ZNF92:range=chr7:64838911-648647885'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ZNF708:range=chr19:21476076-215120145'pad=0,hg19_refFlat_ZNF708:range=chr19:21476076-215120145'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF85:range=chr19:21106207-211331085'pad=0,hg19_refFlat_ZNF85:range=chr19:21106207-211331085'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF254:range=chr19:24270110-243107825'pad=0,hg19_refFlat_ZNF254:range=chr19:24270110-243107825'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF680:range=chr7:63986777-640233325'pad=0,hg19_refFlat_ZNF680:range=chr7:63986777-640233325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF273:range=chr7:64363696-643894165'pad=0,hg19_refFlat_ZNF273:range=chr7:64363696-643894165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF138:range=chr7:64254947-642918645'pad=0,hg19_refFlat_ZNF138:range=chr7:64254947-642918645'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF98:range=chr19:22574318-226050265'pad=0,hg19_refFlat_ZNF98:range=chr19:22574318-226050265'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF676:range=chr19:22362752-223794355'pad=0,hg19_refFlat_ZNF676:range=chr19:22362752-223794355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_ZNF90:range=chr19:20188942-202301695'pad=0,hg19_refFlat_ZNF90:range=chr19:20188942-202301695'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_ZNF626:range=chr19:20828202-208442525'pad=0,hg19_refFlat_ZNF626:range=chr19:20828202-208442525'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF716:range=chr7:57509995-575296555'pad=0,hg19_refFlat_ZNF716:range=chr7:57509995-575296555'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF160:range=chr19:53571330-535895295'pad=0,hg19_refFlat_ZNF160:range=chr19:53571330-535895295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF99:range=chr19:22940116-229668185'pad=0,hg19_refFlat_ZNF99:range=chr19:22940116-229668185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF493:range=chr19:21580040-216077865'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-216077865'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF729:range=chr19:22469328-224999785'pad=0,hg19_refFlat_ZNF729:range=chr19:22469328-224999785'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF85:range=chr19:21106207-211256415'pad=0,hg19_refFlat_ZNF85:range=chr19:21106207-211256415'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF680:range=chr7:63981539-640233325'pad=0,hg19_refFlat_ZNF680:range=chr7:63981539-640233325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF431:range=chr19:21324987-213668375'pad=0,hg19_refFlat_ZNF431:range=chr19:21324987-213668375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF720:range=chr16:31724754-317706975'pad=0,hg19_refFlat_ZNF720:range=chr16:31724754-317706975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF138:range=chr7:64254947-642925805'pad=0,hg19_refFlat_ZNF138:range=chr7:64254947-642925805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF728:range=chr19:23158270-231858325'pad=0,hg19_refFlat_ZNF728:range=chr19:23158270-231858325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF253:range=chr19:19976806-200035565'pad=0,hg19_refFlat_ZNF253:range=chr19:19976806-200035565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF486:range=chr19:20278140-203089115'pad=0,hg19_refFlat_ZNF486:range=chr19:20278140-203089115'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF208:range=chr19:22153993-221935965'pad=0,hg19_refFlat_ZNF208:range=chr19:22153993-221935965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10"	NA	inter
CUST_39862_PI429285431	0.897169	A	0.89702016	A	1.00010317334836	0	lncRNA	40760-1_{1..531}	n406514|NR_024021|lncRNA|Homosapiens||RefGeneNoncode|NR_024021||-0.9631140|-0.0903545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406514|NR_024021|lncRNA|Homosapiens||RefGeneNoncode|NR_024021||-0.9631140|-0.0903545	chr18	 56702970	 56703500	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29267_PI429285431	4.419443	P	4.600587	P	0.882003325234464	0	lncRNA	31018-1_{1..504}	n332372|EU392448|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000557658|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000557658|2.9168100|-0.0675941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332372|EU392448|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000557658|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000557658|2.9168100|-0.0675941	chr19	   868459	   868962	-	NA	NA	NA	NA	MED16	NA	chr19:867962-883559	inner
CUST_5166_PI429285431	0.9241126	A	0.9139719	A	1.00705375899954	0	lncRNA	5106-1_{1..595}	"transcript_id ""ENST00000558039.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558039.1"" | genecode_v17"	chr15	 45444862	 45445456	-	ENSG00000259539.1	ENST00000558039.1	CTD-2651B20.1	CTD-2651B20.1-001	SHF	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr15:45459412-45469724"	NA	inner
CUST_28941_PI429285431	10.272568	P	10.394264	P	0.919106534210866	0	lncRNA	30660-1_{1..675}	n326369|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080561|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080561|-1.0505500|-0.3145377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326369|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080561|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080561|-1.0505500|-0.3145377	chr1	154689312	154689986	-	NA	NA	NA	NA	KCNN3	NA	chr1:154679312-154702993	inner
CUST_34705_PI429285431	0.96163416	A	1.1167967	A	0.898031191269964	0	lncRNA	36154-1_{1..1822}	n341611|AK023601|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4082|NULL|-1.2766300|-0.4701071	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341611|AK023601|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4082|NULL|-1.2766300|-0.4701071	chr8	133010123	133011944	+	NA	NA	NA	NA	EFR3A	NA	chr8:133000123-133021947	inner
CUST_30279_PI429285431	0.9329079	A	1.6524659	A	0.607283467775624	0	lncRNA	32055-1_{1..271}	n335175|AY425006|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254568|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254568|-0.9383800|-0.1316145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335175|AY425006|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254568|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254568|-0.9383800|-0.1316145	chr7	 87229433	 87229703	-	NA	NA	NA	NA	ABCB1	NA	chr7:87219433-87342639	inner
CUST_48219_PI429285431	5.984655	P	5.79651	P	1.13929787812923	0	lncRNA	52082-1_{1..889}	hg19_lincRNAsTranscripts_TCONS_l2_00001486 range=chr1:142785222-142890973 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001486 range=chr1:142785222-142890973 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	142785222	142786110	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50744_PI429285431	2.803824	A	0.9874298	A	3.52199826873112	0	lncRNA	54412-1_{1..232}	hg19_lincRNAsTranscripts_TCONS_l2_00003325 range=chr10:131905802-131906162 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003325 range=chr10:131905802-131906162 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	131905802	131906033	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5017_PI429285431	1.2607287	A	1.2056146	A	1.03894126793243	0	lncRNA	4957-1_{1..480}	"transcript_id ""ENST00000556475.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556475.1"" | genecode_v17"	chr14	101373380	101373859	+	ENSG00000258399.1	ENST00000556475.1	MEG8	MEG8-005	NA	NA	NA	inter
CUST_29093_PI429285431	1.0122824	A	1.5884271	A	0.670753833532901	0	lncRNA	30826-1_{1..1796}	n326589|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027657|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027657|-1.0997100|-0.3366181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326589|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027657|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027657|-1.0997100|-0.3366181	chr1	 60778508	 60780303	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21387_PI429285431	0.9142225	A	0.91712916	A	0.997987285048851	0	lncRNA	23009-1_{1..395}	lnc-GATAD1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GATAD1-2:2	chr7	 92120557	 92120951	+	lnc-GATAD1-2	lnc-GATAD1-2:2	ENSG00000244055.1	AC007566.10	PEX1	"hg19_refFlat_PEX1:range=chr7:92116771-921577495'pad=0,hg19_refFlat_PEX1:range=chr7:92116771-921577495'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30chr7:92116337-92130893"	NA	inner
CUST_39956_PI429285431	0.92700773	A	0.91324294	A	1.00958668606319	0	lncRNA	40828-2_{3001..3705}	n406999|NR_024496|lncRNA|Homosapiens||RefGeneNoncode|NR_024496||1.0873500|-0.2538752	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406999|NR_024496|lncRNA|Homosapiens||RefGeneNoncode|NR_024496||1.0873500|-0.2538752	chr9	 66497268	 66497972	+	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20"	NA	inter
LNCA_21_P0001178	4.414838	P	4.477714	P	0.957353739452817	0	lncRNA	AK124918	NA	AK124918	NA	Hs.625990	XLOC_001023	NA	NA	THC2517995	NA	"BROAD Institute lincRNA (XLOC_001023), lincRNA [TCONS_00000640]"	chr1:150584021-150583962	hs|1q21.3	Agilent_HUMAN_G3V2	AK124918	AK124918	chr1	150583962	150584021	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23337_PI429285431	3.0483534	A	3.1720366	P	0.91784140808569	0	lncRNA	24906-1_{1..513}	lnc-AC078802.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AC078802.1-1:1	chr3	169341691	169342203	-	lnc-AC078802.1-1	lnc-AC078802.1-1:1	ENSG00000242795.2	RP11-3K16.2	MECOM	NA	chr3:169331691-169351739	inner
CUST_26137_PI429285431	0.9043958	A	0.9020863	A	1.0016021054153	0	lncRNA	27648-1_{1..521}	lnc-DHRS7B-5:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHRS7B-5:12	chr17	 20897403	 20897923	+	lnc-DHRS7B-5	lnc-DHRS7B-5:12	ENSG00000233098.3	RP11-344E13.3	USP22	NA	chr17:20902906-20907605	inter
LNCA_21_P0011040	0.9718382	A	0.9255839	A	1.03258052965388	0	lncRNA	TCONS_l2_00005523	NA	NA	NA	NA	XLOC_l2_002894	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002894), lincRNA [TCONS_l2_00005523]"	chr12:11712398-11712457	hs|12p13.2	Agilent_HUMAN_G3V2	TCONS_l2_00005523	TCONS_l2_00005523	chr12	 11712398	 11712457	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20219_PI429285431	5.125893	P	5.3603344	P	0.850014054085246	0	lncRNA	21863-1_{1..1952}	lnc-HMBS-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMBS-1:7	chr11	118947607	118949558	+	lnc-HMBS-1	lnc-HMBS-1:7	ENSG00000160695.8	VPS11	HMBS	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TMEM217:range=chr6:37186198-371868065'pad=0,hg19_refFlat_TMEM217:range=chr6:37186198-371868065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr11:118955587-118957638"	NA	inner
LNCA_21_P0013091	3.4992237	P	3.7871962	P	0.819052310115516	0	lncRNA	TCONS_l2_00024911	NA	NA	NA	NA	XLOC_l2_013116	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013116), lincRNA [TCONS_l2_00024911]"	chr6:129860331-129845161	hs|6q22.33	Agilent_HUMAN_G3V2	TCONS_l2_00024911	TCONS_l2_00024911	chr6	129845161	129860331	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29028_PI429285431	1.0286782	A	1.4800148	A	0.731364953243933	0	lncRNA	30757-1_{1..2755}	n326518|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030074|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030074|0.0831919|-0.3874521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326518|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030074|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030074|0.0831919|-0.3874521	chr1	 95712880	 95715634	+	NA	NA	NA	NA	TMEM56-RWDD3	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90chr1:95702880-95710511"	NA	inter
CUST_3933_PI429285431	3.5366669	P	3.8055494	P	0.829962178935837	0	lncRNA	3903-1_{1..361}	"transcript_id ""ENST00000524488.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524488.1"" | genecode_v17"	chr11	 45377051	 45377411	+	ENSG00000254427.1	ENST00000524488.1	RP11-430H10.1	RP11-430H10.1-002	NA	NA	NA	inter
CUST_51675_PI429285431	2.2416666	A	1.8583425	A	1.30434372186212	0	lncRNA	55237-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00010942 range=chr17:66201329-66208783 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010942 range=chr17:66201329-66208783 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 66201329	 66204328	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_45487_PI429285431	5.3717465	P	5.293551	P	1.05569676570328	0	lncRNA	49900-1_{1..3000}	"gi|236460817|ref|NR_027653.1| Homo sapiens Kruppel-like factor 6 (KLF6), transcript variant D, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|236460817|ref|NR_027653.1| Homo sapiens Kruppel-like factor 6 (KLF6), transcript variant D, non-coding RNA"	Chr10	  3818188	  3821187	-	1316	NR_027653.1	NA	NA	NA	NA	NA	inter
CUST_9425_PI429285431	10.280067	P	11.328203	P	0.483592575345287	0	lncRNA	10931-1_{1..817}	lnc-TNFAIP6-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFAIP6-2:9	chr2	151491749	151492565	+	lnc-TNFAIP6-2	lnc-TNFAIP6-2:9	XLOC_001707	linc-TNFAIP6-2	NA	NA	NA	inter
CUST_25073_PI429285431	1.5637598	A	2.4669402	A	0.534706678033222	0	lncRNA	26610-1_{1..530}	lnc-YLPM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YLPM1-1:1	chr14	 75321920	 75322449	+	lnc-YLPM1-1	lnc-YLPM1-1:1	ENSG00000259606.1	RP11-316E14.6	PROX2	"hg19_refFlat_PROX2:range=chr14:75321835-753305375'pad=0,hg19_refFlat_PROX2:range=chr14:75321835-753305375'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90chr14:75321835-75330537"	NA	inner
CUST_15224_PI429285431	1.491744	A	2.1967614	A	0.613435090088311	0	lncRNA	16894-1_{1..740}	lnc-DBT-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DBT-1:3	chr1	100731560	100732299	-	lnc-DBT-1	lnc-DBT-1:3	XLOC_000939	linc-DBT-3	RTCD1	NA	chr1:100731714-100741675	inter
CUST_35647_PI429285431	8.932396	P	7.604768	P	2.50989672036565	0	lncRNA	37062-2_{3001..6000}	n342794|D87443|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5297|NULL|15.4712000|-0.1832910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342794|D87443|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5297|NULL|15.4712000|-0.1832910	chr11	130748774	130751773	-	NA	NA	NA	NA	SNX19	NA	chr11:130745766-130786382	inner
CUST_46743_PI429285431	6.5320425	P	6.7088842	P	0.88463749703151	0	lncRNA	50895-1_{1..2115}	"gi|223972686|ref|NR_026951.1| Homo sapiens long intergenic non-protein coding RNA 324 (LINC00324), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223972686|ref|NR_026951.1| Homo sapiens long intergenic non-protein coding RNA 324 (LINC00324), non-coding RNA"	Chr17	  8123948	  8126062	-	284029	NR_026951.1	NA	NA	NA	NA	NA	inter
CUST_43680_PI429285431	11.451082	P	12.479186	P	0.490354152409948	0	lncRNA	48433-1_{1..1504}	"gi|302318971|ref|NR_036490.1| Homo sapiens uncharacterized LOC284648 (LOC284648), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|302318971|ref|NR_036490.1| Homo sapiens uncharacterized LOC284648 (LOC284648), non-coding RNA"	Chr1	182584275	182585778	+	284648	NR_036490.1	NA	NA	NA	NA	NA	inter
CUST_35864_PI429285431	8.415939	P	8.5229435	P	0.928513956116473	0	lncRNA	37258-1_{1..2098}	n344530|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_78|NULL|-1.2930500|-0.2211331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344530|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_78|NULL|-1.2930500|-0.2211331	chr4	  6672451	  6674548	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80"	NA	inter
CUST_18441_PI429285431	1.2158452	A	1.1483836	A	1.0478713469676	0	lncRNA	20164-1_{1..2415}	lnc-CEBPB-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CEBPB-4:1	chr20	 48881905	 48884319	+	lnc-CEBPB-4	lnc-CEBPB-4:1	ENSG00000250931	AL354889.1	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60"	NA	inter
CUST_6356_PI429285431	4.2647305	P	4.4337153	P	0.889468364782367	0	lncRNA	6280-1_{1..278}	"transcript_id ""ENST00000590529.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590529.1"" | genecode_v17"	chr19	 15974635	 15974912	-	ENSG00000267453.1	ENST00000590529.1	AC004791.2	AC004791.2-002	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50"	NA	inter
CUST_27370_PI429285431	5.96444	P	5.510259	P	1.37000484949878	0	lncRNA	28933-1_{1..479}	n324532|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040379|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040379|-0.9687170|-0.1522685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324532|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040379|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040379|-0.9687170|-0.1522685	chr6	 37015840	 37016318	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41272_PI429285431	4.524515	P	4.1872587	P	1.26335168091323	0	lncRNA	42240-1_{1..96}	ENST00000384910 ncrna:miRNA chromosome:GRCh37:4:343946:344041:1 gene:ENSG00000207642 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384910 ncrna:miRNA chromosome:GRCh37:4:343946:344041:1 gene:ENSG00000207642 gene_biotype:miRNA transcript_biotype:miRNA	chr4	   343946	   344041	+	ENSG00000207642	ENST00000384910	NA	NA	ZNF141	NA	chr4:333946-354041	inner
CUST_21490_PI429285431	3.1592789	A	3.0889587	A	1.04994968961217	0	lncRNA	23108-1_{1..545}	lnc-SH2D4A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SH2D4A-3:1	chr8	 18858103	 18858647	+	lnc-SH2D4A-3	lnc-SH2D4A-3:1	ENSG00000253335.1	RP11-420B22.1	PSD3	NA	chr8:18848103-18868462	inner
CUST_29285_PI429285431	8.171647	P	8.424499	P	0.839235726344576	0	lncRNA	31036-1_{1..785}	n332396|AK294576|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000489200|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000489200|6.5569400|-0.0747408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332396|AK294576|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000489200|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000489200|6.5569400|-0.0747408	chr16	  1392194	  1392978	+	NA	NA	NA	NA	GNPTG	NA	chr16:1401900-1404709	inner
CUST_43613_PI429285431	10.823105	P	11.363171	P	0.687739445842774	0	lncRNA	48376-1_{1..942}	"gi|206725537|ref|NR_024163.1| Homo sapiens CDC28 protein kinase regulatory subunit 1B (CKS1B), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|206725537|ref|NR_024163.1| Homo sapiens CDC28 protein kinase regulatory subunit 1B (CKS1B), transcript variant 2, non-coding RNA"	Chr1	154947118	154948059	+	1163	NR_024163.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0007068	4.4877763	P	4.668058	P	0.882530656917317	0	lncRNA	TCONS_00018768	NA	NA	NA	NA	XLOC_008528	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008528), lincRNA [TCONS_00018768]"	chr10:81432425-81436224	hs|10q22.3	Agilent_HUMAN_G3V2	TCONS_00018768	TCONS_00018768	chr10	 81432425	 81436224	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47868_PI429285431	7.0956397	P	6.7113347	P	1.30523085723497	0	lncRNA	51767-1_{1..1834}	"gi|410171342|ref|XR_171199.1| PREDICTED: Homo sapiens uncharacterized LOC101060676 (LOC101060676), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171342|ref|XR_171199.1| PREDICTED: Homo sapiens uncharacterized LOC101060676 (LOC101060676), misc_RNA"	NA	NA	NA	NA	NA	XR_171199.1	NA	NA	NA	NA	NA	Unknown
CUST_46137_PI429285431	1.1594554	A	1.2846555	A	0.916876864709326	0	lncRNA	50390-2_{3001..3764}	"gi|300068996|ref|NR_033951.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|300068996|ref|NR_033951.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NR_033951.1	NA	NA	NA	"hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	Unknown
CUST_32861_PI429285431	3.8136191	P	4.61578	P	0.57348954875871	0	lncRNA	34491-1_{1..956}	n339523|BC015846|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1964|NULL|-0.9761580|-0.3240952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339523|BC015846|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1964|NULL|-0.9761580|-0.3240952	chr3	127041142	127042097	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013833	5.66389	P	5.694039	P	0.979319149329998	0	lncRNA	TCONS_l2_00030611	NA	NA	NA	NA	XLOC_l2_015827	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015827), lincRNA [TCONS_l2_00030611]"	chrX:134568665-134568606	hs|Xq26.3	Agilent_HUMAN_G3V2	TCONS_l2_00030611	TCONS_l2_00030611	chrX	134568606	134568665	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40306_PI429285431	3.6158223	P	3.7274039	P	0.925572817063937	0	lncRNA	41109-1_{1..1420}	n408324|NR_029388|lncRNA|Homosapiens||RefGeneNoncode|NR_029388||4.2462500|-0.2388226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n408324|NR_029388|lncRNA|Homosapiens||RefGeneNoncode|NR_029388||4.2462500|-0.2388226	chr10	 51253907	 51255326	-	NA	NA	NA	NA	TIMM23B	NA	chr10:51371379-51381316	inner
CUST_49740_PI429285431	2.6148582	A	1.1086884	A	2.84054901978218	0	lncRNA	53511-1_{1..1724}	hg19_lincRNAsTranscripts_TCONS_l2_00026537 range=chr7:45763358-45808600 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026537 range=chr7:45763358-45808600 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 45763358	 45765081	-	NA	NA	NA	NA	ADCY1	NA	chr7:45753358-45762715	inter
CUST_26630_PI429285431	4.4012175	P	5.186484	P	0.580244762318341	0	lncRNA	28133-1_{1..415}	lnc-CCDC40-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC40-1:1	chr17	 77999613	 78000027	+	lnc-CCDC40-1	lnc-CCDC40-1:1	ENSG00000261978.1	CTD-2529O21.2	TBC1D16	NA	chr17:77989613-78009647	inner
CUST_31629_PI429285431	1.2794843	A	1.2301934	A	1.03475620512003	0	lncRNA	33383-1_{1..3000}	n338151|AK127192|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|540|NULL|0.0880025|-0.3079078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338151|AK127192|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|540|NULL|0.0880025|-0.3079078	chr15	 96838163	 96841162	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
CUST_149_PI429285431	4.9523106	P	5.2098675	P	0.836503278656881	0	lncRNA	139-1_{1..682}	"transcript_id ""ENST00000420522.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420522.1"" | genecode_v17"	chr1	  4631608	  4632289	+	ENSG00000232596.1	ENST00000420522.1	RP1-37J18.2	RP1-37J18.2-001	NA	NA	NA	inter
CUST_5969_PI429285431	8.362563	P	8.384329	P	0.98502619768219	0	lncRNA	5898-1_{1..573}	"transcript_id ""ENST00000584003.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584003.1"" | genecode_v17"	chr17	 72060496	 72061068	-	ENSG00000266357.1	ENST00000584003.1	RP11-101O21.1	RP11-101O21.1-002	NA	NA	NA	inter
CUST_8766_PI429285431	2.2375965	A	1.3135816	A	1.89738822620228	0	lncRNA	10309-1_{1..691}	lnc-ZNF613-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF613-1:1	chr19	 52484180	 52484870	+	lnc-ZNF613-1	lnc-ZNF613-1:1	ENSG00000246125	AC011460.1	ZNF350	NA	chr19:52474180-52490079	inner
CUST_29962_PI429285431	0.9040445	A	0.8961704	A	1.00547283174083	0	lncRNA	31728-1_{1..391}	n334168|M97901|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196997|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196997|1.2338300|-0.3414209	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334168|M97901|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196997|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196997|1.2338300|-0.3414209	chr15	 28231715	 28232105	-	NA	NA	NA	NA	OCA2	NA	chr15:28221715-28271278	inner
CUST_46668_PI429285431	6.544343	P	6.8933945	P	0.785100092392699	0	lncRNA	50837-1_{1..2876}	"gi|283806532|ref|NR_033227.1| Homo sapiens CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae) (CHTF8), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|283806532|ref|NR_033227.1| Homo sapiens CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae) (CHTF8), transcript variant 2, non-coding RNA"	Chr16	 69151912	 69154787	-	54921	NR_033227.1	NA	NA	NA	"hg19_refFlat_HAS3:range=chr16:69143299-691523655'pad=0,hg19_refFlat_HAS3:range=chr16:69143299-691523655'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90"	NA	inter
CUST_43234_PI429285431	8.608994	P	8.673795	P	0.956077186237798	0	lncRNA	48051-1_{1..958}	ENST00000432047 havana:sense_intronic chromosome:GRCh37:3:196639972:196641450:1 gene:ENSG00000230732 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,ensembl.GRCh37.72,"	>ENST00000432047 havana:sense_intronic chromosome:GRCh37:3:196639972:196641450:1 gene:ENSG00000230732 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr3	196639972	196640929	+	ENSG00000230732	ENST00000432047	NA	NA	SENP5	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.80chr3:196629972-196651450"	NA	inner
CUST_42211_PI429285431	0.91737586	A	0.90455437	A	1.00892678787329	0	lncRNA	44303-1_{1..88}	ENST00000582164 ncrna:miRNA chromosome:GRCh37:13:42024148:42024235:1 gene:ENSG00000264042 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582164 ncrna:miRNA chromosome:GRCh37:13:42024148:42024235:1 gene:ENSG00000264042 gene_biotype:miRNA transcript_biotype:miRNA	chr13	 42024148	 42024235	+	ENSG00000264042	ENST00000582164	NA	NA	C13orf15	NA	chr13:42031542-42034235	inter
CUST_19088_PI429285431	3.6038928	P	3.5635898	P	1.02832977749533	0	lncRNA	20777-1_{1..1273}	lnc-RP11-259P6.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-259P6.1.1-1:1	chr11	133781781	133783053	-	lnc-RP11-259P6.1.1-1	lnc-RP11-259P6.1.1-1:1	ENSG00000254918	RP11-259P6.1	IGSF9B	NA	chr11:133785185-133792774	inter
CUST_14816_PI429285431	0.92259127	A	0.9202505	A	1.00162381508808	0	lncRNA	16476-1_{1..699}	lnc-ADARB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADARB2-1:1	chr10	  1203602	  1204300	-	lnc-ADARB2-1	lnc-ADARB2-1:1	XLOC_008683	linc-IDI1	NA	NA	NA	inter
CUST_50979_PI429285431	0.918963	A	0.91619116	A	1.00192313994712	0	lncRNA	54622-1_{1..1944}	hg19_lincRNAsTranscripts_TCONS_l2_00006407 range=chr12:108275509-108297465 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006407 range=chr12:108275509-108297465 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	108275509	108277452	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004467	0.92214465	A	0.90745044	A	1.01023729644435	0	lncRNA	TCONS_00010552	NA	NA	NA	NA	XLOC_005079	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005079), lincRNA [TCONS_00010552]"	chr5:170171928-170171869	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00010552	TCONS_00010552	chr5	170171869	170171928	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17755_PI429285431	3.6726472	P	3.8313155	P	0.895851617859072	0	lncRNA	19487-1_{1..479}	lnc-C6orf89-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C6orf89-1:1	chr6	 36912252	 36912730	+	lnc-C6orf89-1	lnc-C6orf89-1:1	XLOC_005276	linc-PI16	PI16	NA	chr6:36916039-36922451	inter
CUST_1528_PI429285431	0.90677154	A	0.9047931	A	1.00137229083844	0	lncRNA	1515-1_{1..818}	"transcript_id ""ENST00000489012.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000489012.1"" | genecode_v17"	chr3	162917411	162918228	-	ENSG00000241369.1	ENST00000489012.1	CT64	CT64-002	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20"	NA	inter
CUST_49926_PI429285431	3.2187092	P	3.2568104	P	0.97393594795426	0	lncRNA	53676-1_{1..460}	hg19_lincRNAsTranscripts_TCONS_l2_00027183 range=chr7:98861890-98868672 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027183 range=chr7:98861890-98868672 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 98861890	 98862349	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12251_PI429285431	0.9151298	A	0.90012217	A	1.01045679048858	0	lncRNA	13857-1_{1..2309}	lnc-SMC1B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMC1B-4:1	chr22	 46034521	 46036829	-	lnc-SMC1B-4	lnc-SMC1B-4:1	XLOC_014400	linc-SMC1B-6	NA	NA	NA	inter
CUST_19126_PI429285431	1.3430095	A	1.361279	A	0.987416391708841	0	lncRNA	20806-1_{1..2591}	lnc-TXNL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-TXNL1-1:1	NA	NA	     2590	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30144_PI429285431	0.9260031	A	0.9123027	A	1.00954162745122	0	lncRNA	31918-1_{1..328}	n334793|AJ230641|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245076|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245076|1.7589600|-0.2375522	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334793|AJ230641|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245076|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245076|1.7589600|-0.2375522	chr14	107034728	107035055	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48210_PI429285431	5.211129	P	4.5418243	P	1.59030634222572	0	lncRNA	52073-1_{1..576}	hg19_lincRNAsTranscripts_TCONS_l2_00001224 range=chr1:48625151-48630589 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001224 range=chr1:48625151-48630589 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 48625151	 48625726	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10418_PI429285431	0.9138482	A	0.9037767	A	1.00700545603401	0	lncRNA	11945-1_{1..208}	lnc-CBLN2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLN2-4:1	chr18	 69432065	 69432272	-	lnc-CBLN2-4	lnc-CBLN2-4:1	XLOC_012875	linc-RTTN-2	NA	NA	NA	inter
CUST_32504_PI429285431	7.489934	P	7.9258995	P	0.739198892315733	0	lncRNA	34171-1_{1..713}	n339108|AF088010|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1538|NULL|-1.1547800|-0.2906179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339108|AF088010|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1538|NULL|-1.1547800|-0.2906179	chr16	 19077312	 19078024	+	NA	NA	NA	NA	TMC7	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40chr16:19067312-19075264"	NA	inter
CUST_6305_PI429285431	9.562846	P	9.528676	P	1.02396755255753	0	lncRNA	6229-1_{1..302}	"transcript_id ""ENST00000590989.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590989.1"" | genecode_v17"	chr19	  4457959	  4458260	-	ENSG00000267011.1	ENST00000590989.1	CTB-50L17.16	CTB-50L17.16-003	UBXN6	NA	chr19:4447959-4457791	inter
CUST_8837_PI429285431	1.0447456	A	0.9248596	A	1.08664899345726	0	lncRNA	10376-1_{1..2785}	lnc-RPP38-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RPP38-2:1	chr10	 15221268	 15224052	+	lnc-RPP38-2	lnc-RPP38-2:1	ENSG00000248743	AL590365.1	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_NDUFA4:range=chr7:10973263-109796845'pad=0,hg19_refFlat_NDUFA4:range=chr7:10973263-109796845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	inter
CUST_3567_PI429285431	0.9231826	A	0.9127841	A	1.0072337288817	0	lncRNA	3537-1_{1..342}	"transcript_id ""ENST00000447497.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447497.1"" | genecode_v17"	chr9	138475589	138475930	+	ENSG00000237339.1	ENST00000447497.1	RP11-98L5.2	RP11-98L5.2-003	GLT6D1	NA	chr9:138479852-138487118	inter
LNCA_21_P0003388	0.92607856	A	0.9144498	A	1.00809301503	0	lncRNA	ENST00000506068	NA	NA	NA	NA	XLOC_003649	NA	ENST00000506068	NA	NA	"BROAD Institute lincRNA (XLOC_003649), lincRNA [TCONS_00007595]"	chr4:112760899-112760958	hs|4q25	Agilent_HUMAN_G3V2	ENST00000506068	ENST00000506068	chr4	112760899	112760958	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11629_PI429285431	4.368237	P	5.038853	P	0.628238385599378	0	lncRNA	13206-2_{3001..4775}	lnc-ACP1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACP1-3:2	chr2	   203164	   204938	+	lnc-ACP1-3	lnc-ACP1-3:2	XLOC_001300	linc-ACP1	NA	NA	NA	inter
CUST_48239_PI429285431	0.9055083	A	0.89664817	A	1.0061602710315	0	lncRNA	52101-1_{1..473}	hg19_lincRNAsTranscripts_TCONS_l2_00001739 range=chr1:209320564-209324846 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001739 range=chr1:209320564-209324846 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	209320564	209321036	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31027_PI429285431	6.604428	P	7.042707	P	0.738014465851752	0	lncRNA	32816-1_{1..404}	n337239|BC126984|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389108|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389108|2.1024100|-0.0586511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337239|BC126984|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389108|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389108|2.1024100|-0.0586511	chr19	  4499585	  4499988	+	NA	NA	NA	NA	HDGFRP2	NA	chr19:4489585-4502223	inner
CUST_31718_PI429285431	0.91166264	A	0.9050535	A	1.00459161606845	0	lncRNA	33460-1_{1..1494}	n338248|BC018077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|641|NULL|-1.0957100|-0.3523780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338248|BC018077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|641|NULL|-1.0957100|-0.3523780	chr14	 33245369	 33246862	+	NA	NA	NA	NA	AKAP6	NA	chr14:33235369-33256860	inner
CUST_16085_PI429285431	0.90269953	A	0.898137	A	1.00316751079981	0	lncRNA	17788-1_{1..267}	lnc-TPM4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPM4-1:1	chr19	 16176915	 16177181	+	lnc-TPM4-1	lnc-TPM4-1:1	XLOC_012984	linc-TPM4-1	TPM4	NA	chr19:16166915-16187108	inter
CUST_6972_PI429285431	1.0268558	A	0.903687	A	1.08912443897404	0	lncRNA	6920-1_{1..264}	"transcript_id ""ENST00000602955.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602955.1"" | genecode_v17"	chr22	 31373502	 31373765	-	ENSG00000269972.1	ENST00000602955.1	RP3-430N8.10	RP3-430N8.10-001	MORC2	NA	chr22:31363502-31364187	inter
CUST_19856_PI429285431	4.262174	P	5.375443	P	0.462245442311481	0	lncRNA	21513-1_{1..351}	lnc-OR1Q1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR1Q1-1:1	chr9	125401877	125402227	+	lnc-OR1Q1-1	lnc-OR1Q1-1:1	ENSG00000234156.1	RP11-64P14.7	NA	NA	NA	inter
CUST_7371_PI429285431	3.6701367	P	1.466023	A	4.60791370861195	0	lncRNA	9017-1_{1..2073}	lnc-MAPK6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAPK6-3:1	chr15	 52207144	 52209216	+	lnc-MAPK6-3	lnc-MAPK6-3:1	ENSG00000248241	ENST00000503512	TMOD3	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.12;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00chr15:52197144-52204335"	NA	inter
CUST_41050_PI429285431	6.9346733	P	6.577843	P	1.28060921815156	0	lncRNA	41711-1_{1..702}	n411719|NR_044997_7|lncRNA|Homosapiens||RefGeneNoncode|NR_044997_7||-0.7088250|-0.3140545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411719|NR_044997_7|lncRNA|Homosapiens||RefGeneNoncode|NR_044997_7||-0.7088250|-0.3140545	chr6	  4697537	  4698238	+	NA	NA	NA	NA	CDYL	NA	chr6:4702676-4712888	inter
CUST_17894_PI429285431	1.3235196	A	1.0689707	A	1.19296267070002	0	lncRNA	19627-1_{1..564}	lnc-NEDD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NEDD1-2:1	chr12	 97521014	 97521577	+	lnc-NEDD1-2	lnc-NEDD1-2:1	XLOC_009849	linc-TMPO-2	NA	NA	NA	inter
CUST_14637_PI429285431	4.154975	P	4.3035836	P	0.902120088387258	0	lncRNA	16307-1_{1..395}	lnc-ERG-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERG-1:3	chr21	 39704884	 39705278	-	lnc-ERG-1	lnc-ERG-1:3	XLOC_014072	linc-DSCR4	NA	NA	NA	inter
CUST_45453_PI429285431	10.787121	P	11.094269	P	0.808237950829725	0	lncRNA	49869-1_{1..1661}	"gi|389565498|ref|NR_051970.1| Homo sapiens mitochondrial ribosomal protein S2 (MRPS2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|389565498|ref|NR_051970.1| Homo sapiens mitochondrial ribosomal protein S2 (MRPS2), transcript variant 5, non-coding RNA"	Chr9	138392477	138394137	+	51116	NR_051970.1	NA	NA	NA	NA	NA	inter
CUST_19372_PI429285431	0.96495444	A	0.9044746	A	1.04281254235191	0	lncRNA	21034-1_{1..388}	lnc-RP11-257K9.7.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-257K9.7.1-2:1	chr6	 73438280	 73438667	-	lnc-RP11-257K9.7.1-2	lnc-RP11-257K9.7.1-2:1	ENSG00000232868.1	KCNQ5-AS2	KCNQ5	NA	chr6:73428280-73448464	inner
CUST_34490_PI429285431	3.0564625	P	2.870831	A	1.13731469246401	0	lncRNA	35957-2_{3001..5086}	n341366|BC046498|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3835|NULL|0.0390809|-0.2754359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341366|BC046498|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3835|NULL|0.0390809|-0.2754359	chr7	151840803	151842888	+	NA	NA	NA	NA	MLL3	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MLL3:range=chr7:151833917-1521328715'pad=0,hg19_refFlat_MLL3:range=chr7:151833917-1521328715'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CEP63:range=chr3:134214163-1342937335'pad=0,hg19_refFlat_CEP63:range=chr3:134214163-1342937335'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.10chr7:151827803-151852813"	NA	inner
CUST_39647_PI429285431	0.92828983	A	1.0098345	A	0.945045260335679	0	lncRNA	40585-1_{1..679}	n405223|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000322474||-1.0564800|-0.2352875	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405223|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000322474||-1.0564800|-0.2352875	chr7	    36366	    37044	-	NA	NA	NA	NA	LOC100132858	NA	chr7:26366-36378	inter
CUST_51362_PI429285431	2.2541676	A	2.2978334	A	0.97018662783926	0	lncRNA	54958-1_{1..642}	hg19_lincRNAsTranscripts_TCONS_l2_00009250 range=chr15:85075260-85085670 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009250 range=chr15:85075260-85085670 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 85075260	 85075901	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45128_PI429285431	0.9129134	A	0.90538055	A	1.00523502886677	0	lncRNA	49608-1_{1..1374}	"gi|310124659|ref|XR_110812.1| PREDICTED: Homo sapiens uncharacterized LOC100507312, transcript variant 2 (LOC100507312), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124659|ref|XR_110812.1| PREDICTED: Homo sapiens uncharacterized LOC100507312, transcript variant 2 (LOC100507312), misc_RNA"	NA	NA	NA	NA	NA	XR_110812.1	NA	NA	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10"	NA	Unknown
CUST_5067_PI429285431	14.274288	P	14.001522	P	1.20812187443022	0	lncRNA	5007-1_{1..2518}	"transcript_id ""ENST00000555578.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000555578.1"" | genecode_v17"	chr14	105287538	105290055	+	ENSG00000258701.1	ENST00000555578.1	LINC00638	LINC00638-001	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00"	NA	inter
CUST_23171_PI429285431	2.238557	A	2.6498513	A	0.751948467662165	0	lncRNA	24742-1_{1..407}	lnc-MYOC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYOC-1:1	chr1	171196790	171197196	-	lnc-MYOC-1	lnc-MYOC-1:1	ENSG00000225243.1	RP1-127D3.4	NA	"hg19_refFlat_FMO2:range=chr1:171154853-1711780925'pad=0,hg19_refFlat_FMO2:range=chr1:171154853-1711780925'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20"	NA	inter
CUST_5364_PI429285431	0.96684444	A	0.925052	A	1.0293919745388	0	lncRNA	5302-1_{1..593}	"transcript_id ""ENST00000559331.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559331.1"" | genecode_v17"	chr15	101389980	101390572	+	ENSG00000232386.4	ENST00000559331.1	RP11-66B24.2	RP11-66B24.2-006	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	inter
CUST_49030_PI429285431	3.6059992	P	3.3916395	P	1.16018888258858	0	lncRNA	52859-1_{1..572}	hg19_lincRNAsTranscripts_TCONS_l2_00021167 range=chr4:68286374-68333995 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021167 range=chr4:68286374-68333995 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 68286374	 68286945	-	NA	NA	NA	NA	CENPC1	NA	chr4:68337989-68343995	inter
CUST_44499_PI429285431	1.6749924	A	1.7680454	A	0.937536653727381	0	lncRNA	49099-1_{1..1808}	"gi|310119506|ref|XR_108564.1| PREDICTED: Homo sapiens GALI1870 (LOC100133299), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119506|ref|XR_108564.1| PREDICTED: Homo sapiens GALI1870 (LOC100133299), misc_RNA"	NA	NA	NA	NA	NA	XR_108564.1	NA	NA	NA	NA	NA	Unknown
CUST_11706_PI429285431	0.91380614	A	0.9300662	A	0.988792660692833	0	lncRNA	13284-1_{1..265}	lnc-PFKP-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PFKP-7:1	chr10	  3609075	  3609339	+	lnc-PFKP-7	lnc-PFKP-7:1	XLOC_008350	linc-AKR1E2-13	NA	NA	NA	inter
CUST_10643_PI429285431	0.91984254	A	0.93003166	A	0.992962321465479	0	lncRNA	12175-1_{1..613}	lnc-AADAT-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AADAT-2:1	chr4	171200773	171201385	-	lnc-AADAT-2	lnc-AADAT-2:1	XLOC_004156	linc-AADAT-7	NA	NA	NA	inter
CUST_18763_PI429285431	0.9213413	A	0.9152268	A	1.00424724251232	0	lncRNA	20459-1_{1..2701}	lnc-NRTN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NRTN-1:1	chr19	  5837895	  5840595	+	lnc-NRTN-1	lnc-NRTN-1:1	ENSG00000249707	AC024592.1	FUT3	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10chr19:5842899-5849733"	NA	inner
CUST_6434_PI429285431	3.6409662	P	4.87642	P	0.424708886295279	0	lncRNA	6374-1_{1..709}	"transcript_id ""ENST00000587859.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587859.1"" | genecode_v17"	chr19	 29704142	 29704850	+	ENSG00000267498.1	ENST00000587859.1	CTB-32O4.2	CTB-32O4.2-001	UQCRFS1	NA	chr19:29698167-29704136	inter
LNCA_21_P0005588	1.0164709	A	2.3966346	A	0.384175201182726	0	lncRNA	TCONS_00014239	NA	NA	NA	NA	XLOC_006316	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006316), lincRNA [TCONS_00014239]"	chr7:157294923-157294982	hs|7q36.3	Agilent_HUMAN_G3V2	TCONS_00014239	TCONS_00014239	chr7	157294923	157294982	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38863_PI429285431	7.684006	P	7.62046	P	1.04503118882387	0	lncRNA	39853-1_{1..2019}	n384731|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kuq.1||1.5478200|-0.1471800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384731|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kuq.1||1.5478200|-0.1471800	chr5	127301575	127303593	-	NA	NA	NA	NA	SLC12A2	NA	chr5:127419483-127429299	inter
CUST_5562_PI429285431	3.9078245	P	2.7897456	A	2.17057744790611	0	lncRNA	5491-2_{3001..3828}	"transcript_id ""ENST00000576365.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000576365.1"" | genecode_v17"	chr16	 55575112	 55575939	+	ENSG00000261997.1	ENST00000576365.1	RP11-212I21.4	RP11-212I21.4-001	LPCAT2	NA	chr16:55562112-55585939	inner
CUST_92_PI429285431	2.406729	A	2.6120071	A	0.867371472841238	0	lncRNA	84-1_{1..1820}	"transcript_id ""ENST00000358234.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000358234.4"" | genecode_v17"	chr19	 49834916	 49836735	-	ENSG00000197813.4	ENST00000358234.4	CTC-301O7.4	CTC-301O7.4-001	SLC6A16	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0,hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10chr19:49824916-49828474"	NA	inner
CUST_17954_PI429285431	1.0746918	A	1.3639753	A	0.818308362284213	0	lncRNA	19685-1_{1..2226}	lnc-SRBD1-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRBD1-4:5	chr2	 45419279	 45421504	-	lnc-SRBD1-4	lnc-SRBD1-4:5	XLOC_002078	linc-SIX2-2	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80"	NA	inter
LNCA_21_P0013134	2.6304898	A	0.97332835	A	3.15395363105063	0	lncRNA	ENST00000435946	NA	AF086303	NA	Hs.384600	XLOC_l2_012605	NA	ENST00000435946	THC2651086	NA	"BROAD Institute lincRNA (XLOC_l2_012605), lincRNA [TCONS_l2_00025175]"	chr6:75400330-75400389	hs|6q13	Agilent_HUMAN_G3V2	ENST00000435946	ENST00000435946	chr6	 75400330	 75400389	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22318_PI429285431	2.3367379	A	2.6244583	A	0.819195445790939	0	lncRNA	23917-1_{1..557}	lnc-CT62-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CT62-1:4	chr15	 71481155	 71481711	-	lnc-CT62-1	lnc-CT62-1:4	ENSG00000259964.1	RP11-673C5.2	THSD4	NA	chr15:71471155-71491355	inner
CUST_39037_PI429285431	0.9144842	A	0.90723	A	1.00504089103187	0	lncRNA	40017-1_{1..1773}	n385433|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ylf.2||4.9146200|-0.2782398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n385433|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ylf.2||4.9146200|-0.2782398	chr8	104177736	104179508	-	NA	NA	NA	NA	BAALC	NA	chr8:104167736-104242533	inner
CUST_2060_PI429285431	1.0222805	A	0.9150992	A	1.07712172697319	0	lncRNA	2052-1_{1..432}	"transcript_id ""ENST00000507950.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507950.1"" | genecode_v17"	chr5	  5069305	  5069736	-	ENSG00000250529.1	ENST00000507950.1	CTD-2247C11.5	CTD-2247C11.5-001	NA	NA	NA	inter
CUST_32550_PI429285431	13.348703	P	13.7102785	P	0.778314154784588	0	lncRNA	34215-1_{1..449}	n339164|AF085934|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1595|NULL|0.3729780|-0.1705007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339164|AF085934|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1595|NULL|0.3729780|-0.1705007	chr2	231330480	231330928	-	NA	NA	NA	NA	SP100	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10chr2:231320480-231340918"	NA	inner
CUST_18617_PI429285431	0.9246781	A	0.9241911	A	1.00033761965762	0	lncRNA	20323-1_{1..2683}	lnc-C3orf32-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C3orf32-2:7	chr3	  8057564	  8060246	-	lnc-C3orf32-2	lnc-C3orf32-2:7	ENSG00000227110	AC087859.1	NA	NA	NA	inter
LNCA_21_P0004033	1.0350918	A	0.97466856	A	1.04277163139676	0	lncRNA	ENST00000513812	NA	NA	NA	NA	XLOC_004472	NA	ENST00000513812	THC2767429	NA	"BROAD Institute lincRNA (XLOC_004472), lincRNA [TCONS_00009463]"	chr5:92014645-92014704	hs|5q14.3	Agilent_HUMAN_G3V2	ENST00000513812	ENST00000513812	chr5	 92014645	 92014704	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24090_PI429285431	6.481261	P	6.971106	P	0.712101600327394	0	lncRNA	25641-1_{1..483}	lnc-UBE2Z-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBE2Z-1:1	chr17	 47014341	 47014823	+	lnc-UBE2Z-1	lnc-UBE2Z-1:1	ENSG00000230532.1	AC091133.1	SNF8	"hg19_refFlat_SNF8:range=chr17:47007837-470220965'pad=0,hg19_refFlat_SNF8:range=chr17:47007837-470220965'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30chr17:47007458-47022154"	NA	inner
CUST_27106_PI429285431	2.3933122	A	3.1514666	A	0.591252219785408	0	lncRNA	28639-1_{1..362}	n324218|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326928|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326928|-0.9594030|-0.2129867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324218|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326928|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326928|-0.9594030|-0.2129867	chr7	 25327445	 25327806	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42890_PI429285431	8.655093	P	9.057911	P	0.756379411994272	0	lncRNA	45981-1_{1..134}	ENST00000459004 ncrna:snoRNA chromosome:GRCh37:5:82360023:82360156:-1 gene:ENSG00000238835 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459004 ncrna:snoRNA chromosome:GRCh37:5:82360023:82360156:-1 gene:ENSG00000238835 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	 82360023	 82360156	-	ENSG00000238835	ENST00000459004	NA	NA	TMEM167A	NA	chr5:82350023-82370156	inner
CUST_16590_PI429285431	0.9212328	A	0.9124737	A	1.00608981344338	0	lncRNA	18291-1_{1..504}	lnc-AMY1B-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AMY1B-1:4	chr1	104068018	104068521	-	lnc-AMY1B-1	lnc-AMY1B-1:4	XLOC_000945	linc-COL11A1	RNPC3	NA	chr1:104068578-104078115	inter
CUST_48333_PI429285431	1.0510985	A	0.901201	A	1.1094906426357	0	lncRNA	52188-3_{6001..6900}	hg19_lincRNAsTranscripts_TCONS_l2_00001211 range=chr1:47333329-47349818 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001211 range=chr1:47333329-47349818 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 47339329	 47340228	-	NA	NA	NA	NA	CYP4A11	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.14;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.60;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr1:47357206-47359818"	NA	inter
CUST_46564_PI429285431	5.2730947	P	5.576524	P	0.81032395745803	0	lncRNA	50748-1_{1..536}	"gi|397139602|ref|XR_132600.2| PREDICTED: Homo sapiens uncharacterized LOC100128108, transcript variant 2 (LOC100128108), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139602|ref|XR_132600.2| PREDICTED: Homo sapiens uncharacterized LOC100128108, transcript variant 2 (LOC100128108), misc_RNA"	NA	NA	NA	NA	NA	XR_132600.2	NA	NA	NA	NA	NA	Unknown
CUST_30190_PI429285431	5.0657263	P	5.1765475	P	0.926060786496023	0	lncRNA	31964-1_{1..342}	n334950|AJ459855|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248112_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248112_04|1.7222700|-0.3423237	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334950|AJ459855|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248112_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248112_04|1.7222700|-0.3423237	chr6	 29395419	 29395760	-	NA	NA	NA	NA	OR11A1	NA	chr6:29385419-29395509	inner
CUST_28242_PI429285431	0.90201557	A	0.8993834	A	1.00182614659277	0	lncRNA	29878-1_{1..742}	n325534|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255297|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255297|-0.3935570|-0.2876562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325534|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255297|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255297|-0.3935570|-0.2876562	chr17	 67598194	 67598935	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	inter
CUST_24200_PI429285431	3.2821684	P	2.915638	A	1.28924852948303	0	lncRNA	25751-1_{1..319}	lnc-KCTD20-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCTD20-1:1	chr6	 36359553	 36359871	+	lnc-KCTD20-1	lnc-KCTD20-1:1	ENSG00000224666.2	RP1-50J22.4	PXT1	"hg19_refFlat_PXT1:range=chr6:36359547-363938595'pad=0,hg19_refFlat_PXT1:range=chr6:36359547-363938595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50chr6:36358328-36369771"	NA	inner
CUST_24445_PI429285431	2.1268623	A	2.257292	A	0.913559310317033	0	lncRNA	25998-1_{1..286}	lnc-GSX2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GSX2-4:1	chr4	 54366584	 54366869	+	lnc-GSX2-4	lnc-GSX2-4:1	ENSG00000250930.1	LNX1-AS1	LNX1	NA	chr4:54356584-54376669	inner
CUST_41536_PI429285431	6.4768333	P	6.5820584	P	0.929659878854502	0	lncRNA	42795-1_{1..95}	ENST00000516229 ncrna:miRNA chromosome:GRCh37:Y:19734941:19735035:-1 gene:ENSG00000252038 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516229 ncrna:miRNA chromosome:GRCh37:Y:19734941:19735035:-1 gene:ENSG00000252038 gene_biotype:miRNA transcript_biotype:miRNA	chrY	 19734941	 19735035	-	ENSG00000252038	ENST00000516229	NA	NA	NA	NA	NA	inter
CUST_9938_PI429285431	0.90040576	A	1.3692188	A	0.722558829869333	0	lncRNA	11461-1_{1..476}	lnc-RHOB-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RHOB-6:2	chr2	 19719271	 19719746	+	lnc-RHOB-6	lnc-RHOB-6:2	XLOC_001377	linc-RHOB-5	NA	NA	NA	inter
CUST_841_PI429285431	1.3962964	A	1.5179363	A	0.919142274875127	0	lncRNA	835-1_{1..504}	"transcript_id ""ENST00000433893.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433893.1"" | genecode_v17"	chr2	 37552483	 37552986	+	ENSG00000232028.1	ENST00000433893.1	AC007391.2	AC007391.2-001	PRKD3	NA	chr2:37542483-37544222	inter
CUST_4309_PI429285431	0.9219276	A	0.91554165	A	1.00443621423097	0	lncRNA	4264-1_{1..3000}	"transcript_id ""ENST00000542219.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000542219.1"" | genecode_v17"	chr12	 68102827	 68105826	-	ENSG00000255970.1	ENST00000542219.1	RP11-43N5.1	RP11-43N5.1-001	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30"	NA	inter
CUST_13911_PI429285431	3.015222	P	3.74357	P	0.603594681958528	0	lncRNA	15558-1_{1..246}	lnc-ASCL4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASCL4-1:1	chr12	108307664	108307909	+	lnc-ASCL4-1	lnc-ASCL4-1:1	XLOC_009872	linc-WSCD2	NA	NA	NA	inter
CUST_44886_PI429285431	16.737335	P	16.672878	P	1.04569128955913	0	lncRNA	49409-1_{1..1041}	"gi|221307604|ref|NR_026676.1| Homo sapiens ribosomal protein S2 pseudogene 32 (RPS2P32), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|221307604|ref|NR_026676.1| Homo sapiens ribosomal protein S2 pseudogene 32 (RPS2P32), non-coding RNA"	Chr7	 23530007	 23531047	+	256355	NR_026676.1	NA	NA	NA	NA	NA	inter
CUST_12513_PI429285431	0.90543675	A	0.90203243	A	1.00236248108067	0	lncRNA	14124-1_{1..432}	lnc-EMB-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EMB-4:1	chr5	 50672369	 50672800	-	lnc-EMB-4	lnc-EMB-4:1	XLOC_004816	linc-EMB-6	ISL1	NA	chr5:50678958-50682526	inter
CUST_41329_PI429285431	8.701715	P	8.558291	P	1.10452341271746	0	lncRNA	42383-1_{1..83}	ENST00000581938 ncrna:miRNA chromosome:GRCh37:1:55691314:55691396:1 gene:ENSG00000265822 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581938 ncrna:miRNA chromosome:GRCh37:1:55691314:55691396:1 gene:ENSG00000265822 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 55691314	 55691396	+	ENSG00000265822	ENST00000581938	NA	NA	NA	NA	NA	inter
CUST_9935_PI429285431	1.7290807	A	2.2374058	A	0.703038157976476	0	lncRNA	11458-1_{1..623}	lnc-DAAM2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DAAM2-2:1	chr6	 40139143	 40139765	+	lnc-DAAM2-2	lnc-DAAM2-2:1	XLOC_005284	linc-TSPO2-3	NA	NA	NA	inter
CUST_50139_PI429285431	0.9261605	A	0.8986815	A	1.01922954248934	0	lncRNA	53865-1_{1..1115}	hg19_lincRNAsTranscripts_TCONS_l2_00028589 range=chr9:71925-80680 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028589 range=chr9:71925-80680 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	    71925	    73039	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
CUST_10673_PI429285431	0.99551505	A	1.5084784	A	0.700781526858952	0	lncRNA	12206-1_{1..689}	lnc-HIST1H2AI-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HIST1H2AI-3:1	chr6	 27674418	 27675106	+	lnc-HIST1H2AI-3	lnc-HIST1H2AI-3:1	XLOC_005219	linc-HIST1H2AI-3	NA	NA	NA	inter
CUST_11565_PI429285431	4.7526855	P	4.952776	P	0.870495955528912	0	lncRNA	13142-1_{1..960}	lnc-CHAC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHAC1-1:1	chr15	 41244582	 41245541	+	lnc-CHAC1-1	lnc-CHAC1-1:1	XLOC_011224	linc-CHAC1	CHAC1	NA	chr15:41240685-41248717	inter
CUST_10024_PI429285431	0.9535239	A	1.4002887	A	0.733686273899136	0	lncRNA	11550-1_{1..1136}	lnc-MFSD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MFSD1-1:1	chr3	158602069	158603204	+	lnc-MFSD1-1	lnc-MFSD1-1:1	XLOC_002897	linc-IQCJ	NA	NA	NA	inter
CUST_12926_PI429285431	6.461822	P	6.489949	P	0.980692670115005	0	lncRNA	14554-1_{1..446}	lnc-CCDC93-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC93-3:1	chr2	118981356	118981801	-	lnc-CCDC93-3	lnc-CCDC93-3:1	XLOC_002291	linc-CCDC93-1	NA	NA	NA	inter
LNCA_21_P0011879	0.9720909	A	0.92452836	A	1.03351730130851	0	lncRNA	ENST00000418050	NA	BC014149	NA	Hs.162411	XLOC_l2_007802	NA	ENST00000418050	THC2631491	NA	"BROAD Institute lincRNA (XLOC_l2_007802), lincRNA [TCONS_l2_00014291]"	chr2:232258963-232259022	hs|2q37.1	Agilent_HUMAN_G3V2	ENST00000418050	ENST00000418050	chr2	232258963	232259022	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41567_PI429285431	2.5604486	A	2.2907982	A	1.20551566660835	0	lncRNA	42884-1_{1..97}	ENST00000384968 ncrna:miRNA chromosome:GRCh37:8:9599182:9599278:1 gene:ENSG00000207701 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384968 ncrna:miRNA chromosome:GRCh37:8:9599182:9599278:1 gene:ENSG00000207701 gene_biotype:miRNA transcript_biotype:miRNA	chr8	  9599182	  9599278	+	ENSG00000207701	ENST00000384968	NA	NA	TNKS	NA	chr8:9589182-9609278	inner
CUST_45035_PI429285431	9.577822	P	8.997778	P	1.49489483995402	0	lncRNA	49532-2_{3001..3615}	"gi|218082922|ref|NR_024586.1| Homo sapiens uncharacterized LOC100216545 (LOC100216545), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|218082922|ref|NR_024586.1| Homo sapiens uncharacterized LOC100216545 (LOC100216545), non-coding RNA"	Chr7	104653989	104654603	-	100216545	NR_024586.1	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80"	NA	inter
CUST_18372_PI429285431	1.1777043	A	1.5921681	A	0.750298302835544	0	lncRNA	20100-1_{1..545}	lnc-JPH4-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JPH4-1:9	chr14	 24198362	 24198906	-	lnc-JPH4-1	lnc-JPH4-1:9	ENSG00000258464	RP11-388E23.2	NA	NA	NA	inter
CUST_39740_PI429285431	0.90309364	A	1.0224245	A	0.920614544155255	0	lncRNA	40665-1_{1..987}	n405795|NR_003024|lncRNA|Homosapiens||RefGeneNoncode|NR_003024||4.3406200|-0.2309897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405795|NR_003024|lncRNA|Homosapiens||RefGeneNoncode|NR_003024||4.3406200|-0.2309897	chr7	109599283	109600269	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5914_PI429285431	4.9222975	P	5.4652405	P	0.686369333124934	0	lncRNA	5844-2_{3001..4056}	"transcript_id ""ENST00000577267.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577267.1"" | genecode_v17"	chr17	 56069403	 56070458	-	ENSG00000264112.1	ENST00000577267.1	RP11-159D12.2	RP11-159D12.2-002	SRSF1	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40chr17:56078280-56080840"	NA	inter
CUST_6540_PI429285431	3.8370023	P	3.470653	P	1.28908670162042	0	lncRNA	6483-1_{1..332}	"transcript_id ""ENST00000597989.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597989.1"" | genecode_v17"	chr19	 46604380	 46604711	+	ENSG00000267922.1	ENST00000597989.1	AC007193.6	AC007193.6-001	IGFL2	NA	chr19:46651039-46664561	inner
CUST_12835_PI429285431	3.3198166	P	3.4069092	P	0.941418037281436	0	lncRNA	14462-1_{1..436}	lnc-GAPVD1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GAPVD1-2:2	chr9	128174693	128175128	+	lnc-GAPVD1-2	lnc-GAPVD1-2:2	XLOC_007562	linc-PBX3-4	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40"	NA	inter
CUST_133_PI429285431	1.3814623	A	2.5441582	A	0.446677069552491	0	lncRNA	125-1_{1..607}	"transcript_id ""ENST00000457440.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457440.1"" | genecode_v17"	chr1	  2728415	  2729021	-	ENSG00000233234.1	ENST00000457440.1	RP11-740P5.2	RP11-740P5.2-001	NA	NA	NA	inter
CUST_23969_PI429285431	1.80193	A	1.5092237	A	1.22493593733621	0	lncRNA	25524-1_{1..359}	lnc-IDI1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-IDI1-1:1	chr10	  1403615	  1403973	-	lnc-IDI1-1	lnc-IDI1-1:1	ENSG00000233052.1	RP11-398B16.2	ADARB2	NA	chr10:1393615-1413832	inner
CUST_8233_PI429285431	2.3368726	A	2.683681	A	0.786321714233927	0	lncRNA	9823-1_{1..720}	lnc-EMX2-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-EMX2-4:5	chr10	119966034	119966753	+	lnc-EMX2-4	lnc-EMX2-4:5	ENSG00000177640	CASC2	NA	NA	NA	inter
CUST_30479_PI429285431	3.5724714	P	1.0155438	A	5.88453166752389	0	lncRNA	32259-1_{1..354}	n335628|CR603516|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000282711|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000282711|-1.3559400|-0.3391268	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335628|CR603516|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000282711|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000282711|-1.3559400|-0.3391268	chr9	 14081847	 14082200	-	NA	NA	NA	NA	NFIB	NA	chr9:14071847-14092201	inner
CUST_1174_PI429285431	0.9307487	A	0.91663134	A	1.00983344193703	0	lncRNA	1163-1_{1..567}	"transcript_id ""ENST00000441205.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441205.1"" | genecode_v17"	chr2	177855570	177856136	-	ENSG00000236501.1	ENST00000441205.1	AC079305.11	AC079305.11-001	NA	NA	NA	inter
CUST_49627_PI429285431	2.6286368	A	2.9402177	P	0.805758328222875	0	lncRNA	53411-1_{1..1125}	hg19_lincRNAsTranscripts_TCONS_l2_00025689 range=chr7:17029683-17060647 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025689 range=chr7:17029683-17060647 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 17029683	 17030807	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90"	NA	inter
LNCA_21_P0012950	0.95242274	A	1.1778533	A	0.855339718761451	0	lncRNA	TCONS_l2_00023516	NA	NA	NA	NA	XLOC_l2_011728	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011728), lincRNA [TCONS_l2_00023516]"	chr5:116804550-116807628	hs|5q23.1	Agilent_HUMAN_G3V2	TCONS_l2_00023516	TCONS_l2_00023516	chr5	116804550	116807628	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2889_PI429285431	3.3328488	P	3.7945352	P	0.726136963884055	0	lncRNA	2870-1_{1..743}	"transcript_id ""ENST00000438538.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438538.1"" | genecode_v17"	chr7	 93690453	 93691195	+	ENSG00000236453.1	ENST00000438538.1	AC003092.1	AC003092.1-002	NA	NA	NA	inter
CUST_26062_PI429285431	8.491773	P	9.116542	P	0.648523608666513	0	lncRNA	27575-1_{1..444}	lnc-AC018816.3.1-8:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC018816.3.1-8:5	chr3	  6832740	  6833183	-	lnc-AC018816.3.1-8	lnc-AC018816.3.1-8:5	ENSG00000226258.2	GRM7-AS3	NA	NA	NA	inter
CUST_26722_PI429285431	10.540161	P	10.383132	P	1.11498863118799	0	lncRNA	28218-1_{1..330}	n3894|AY077740|scaRNA|Homosapiens|U90|NONCODEv2.0|n3894|NULL|-1.5906100|-0.6129707	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n3894|AY077740|scaRNA|Homosapiens|U90|NONCODEv2.0|n3894|NULL|-1.5906100|-0.6129707	chr3	160232694	160233023	-	NA	NA	NA	NA	KPNA4	NA	chr3:160222694-160243024	inner
LNCA_21_P0009757	4.009028	P	4.8073893	P	0.575001928565662	0	lncRNA	TCONS_00027288	NA	NA	NA	NA	XLOC_013290	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013290), lincRNA [TCONS_00027288]"	chr19:30186193-30186134	hs|19q12	Agilent_HUMAN_G3V2	TCONS_00027288	TCONS_00027288	chr19	 30186134	 30186193	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52140_PI429285431	2.1101775	A	2.5318995	A	0.746533030909312	0	lncRNA	55664-1_{1..771}	hg19_lincRNAsTranscripts_TCONS_l2_00017900 range=chr22:20975614-20976799 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017900 range=chr22:20975614-20976799 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 20975614	 20976384	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80"	NA	inter
CUST_22009_PI429285431	4.21236	P	4.5011053	P	0.81861369065012	0	lncRNA	23618-1_{1..594}	lnc-CNBD1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CNBD1-4:2	chr8	 89341158	 89341751	+	lnc-CNBD1-4	lnc-CNBD1-4:2	ENSG00000253553.1	RP11-586K2.1	MMP16	NA	chr8:89331158-89339717	inter
CUST_26183_PI429285431	6.346203	P	6.7970862	P	0.731594837573226	0	lncRNA	27694-1_{1..1679}	lnc-SLCO2B1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SLCO2B1-1:1	chr11	 74953064	 74954742	+	lnc-SLCO2B1-1	lnc-SLCO2B1-1:1	ENSG00000261594.1	CTD-2562J17.3	LOC441617	NA	chr11:74951950-74954749	inner
CUST_30029_PI429285431	3.536458	A	3.4730444	A	1.04493528790458	0	lncRNA	31797-1_{1..228}	n334497|U29114|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218960|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218960|-1.3671000|-0.3916983	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334497|U29114|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218960|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218960|-1.3671000|-0.3916983	chr12	 66352406	 66352633	+	NA	NA	NA	NA	HMGA2	NA	chr12:66342406-66360071	inner
CUST_13906_PI429285431	0.90865386	A	0.90830654	A	1.00024077285989	0	lncRNA	15553-1_{1..232}	lnc-PRKD1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRKD1-2:3	chr14	 30971026	 30971257	-	lnc-PRKD1-2	lnc-PRKD1-2:3	XLOC_010988	linc-PRKD1-1	NA	NA	NA	inter
CUST_52040_PI429285431	0.91815186	A	0.9049837	A	1.00916925538448	0	lncRNA	55570-1_{1..1068}	hg19_lincRNAsTranscripts_TCONS_l2_00017176 range=chr21:26757742-26771686 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017176 range=chr21:26757742-26771686 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 26757742	 26758809	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20506_PI429285431	0.926614	A	2.6650946	A	0.299685128748885	0	lncRNA	22148-1_{1..504}	lnc-RASGEF1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RASGEF1B-1:1	chr4	 82965154	 82965657	-	lnc-RASGEF1B-1	lnc-RASGEF1B-1:1	ENSG00000251331.1	RP11-689K5.3	NA	NA	NA	inter
CUST_45565_PI429285431	8.292974	P	7.785496	P	1.42156296359153	0	lncRNA	49964-1_{1..3000}	"gi|224177505|ref|NR_024497.2| Homo sapiens uncharacterized LOC399744 (LOC399744), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224177505|ref|NR_024497.2| Homo sapiens uncharacterized LOC399744 (LOC399744), non-coding RNA"	Chr10	 38717074	 38720073	+	399744	NR_024497.2	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90"	NA	inter
CUST_32683_PI429285431	1.0398325	A	1.1164502	A	0.948278216240644	0	lncRNA	34332-2_{3001..3338}	n339313|AL832093|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1745|NULL|-0.9061370|-0.1309586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339313|AL832093|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1745|NULL|-0.9061370|-0.1309586	chr16	 85179297	 85179634	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3817_PI429285431	2.516903	A	2.1239433	A	1.31308444543237	0	lncRNA	3785-1_{1..2864}	"transcript_id ""ENST00000429809.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429809.1"" | genecode_v17"	chr10	122938214	122941077	+	ENSG00000227143.1	ENST00000429809.1	RP11-159H3.2	RP11-159H3.2-001	NA	NA	NA	inter
CUST_664_PI429285431	2.7586174	A	2.641502	A	1.08456415877624	0	lncRNA	657-1_{1..722}	"transcript_id ""ENST00000588264.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588264.1"" | genecode_v17"	chr2	  4006857	  4007578	-	ENSG00000237401.2	ENST00000588264.1	AC107070.1	AC107070.1-009	NA	NA	NA	inter
CUST_20991_PI429285431	0.9558685	A	1.3704493	A	0.750237457445881	0	lncRNA	22620-1_{1..609}	lnc-PLEKHA3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLEKHA3-2:2	chr2	179578481	179579089	+	lnc-PLEKHA3-2	lnc-PLEKHA3-2:2	ENSG00000234483.1	AC010680.1	TTN	"hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr2:179568481-179588965"	NA	inner
CUST_14461_PI429285431	0.91745764	A	1.0626994	A	0.90422783864705	0	lncRNA	16124-1_{1..865}	lnc-DYRK2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DYRK2-2:3	chr12	 68326486	 68327350	+	lnc-DYRK2-2	lnc-DYRK2-2:3	XLOC_009792	linc-RAP1B-5	NA	NA	NA	inter
CUST_29341_PI429285431	5.547698	P	5.7861004	P	0.847683493720072	0	lncRNA	31093-1_{1..956}	n332582|AK307948|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000426814|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000426814|6.3282200|-0.1246572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332582|AK307948|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000426814|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000426814|6.3282200|-0.1246572	chr17	  4455424	  4456379	-	NA	NA	NA	NA	MYBBP1A	NA	chr17:4445424-4458681	inner
LNCA_21_P0013258	2.3862767	A	1.4521285	A	1.91076214460183	0	lncRNA	THC2565454	NA	NA	NA	NA	XLOC_l2_013532	NA	NA	THC2565454	NA	"BROAD Institute lincRNA (XLOC_l2_013532), lincRNA [TCONS_l2_00026125]"	chr7:099208535-099208594	hs|7q22.1	Agilent_HUMAN_G3V2	THC2565454	THC2565454	chr7	 99208535	 99208594	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49356_PI429285431	2.63894	A	2.9450479	A	0.808820853918147	0	lncRNA	53169-1_{1..455}	hg19_lincRNAsTranscripts_TCONS_l2_00022998 range=chr5:89561087-89585870 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022998 range=chr5:89561087-89585870 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 89561087	 89561541	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44474_PI429285431	9.788782	P	9.828667	P	0.972732482701451	0	lncRNA	49078-1_{1..2758}	"gi|380420345|ref|NR_046439.1| Homo sapiens MAFF interacting protein (pseudogene) (MAFIP), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|380420345|ref|NR_046439.1| Homo sapiens MAFF interacting protein (pseudogene) (MAFIP), transcript variant 1, non-coding RNA"	NT_113888.1	    53589	    56346	-	727764	NR_046439.1	NA	NA	NA	NA	NA	Unknown
CUST_14406_PI429285431	5.4693832	P	5.586472	P	0.922046362857267	0	lncRNA	16067-1_{1..3000}	lnc-RP11-210M15.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-210M15.2.1-1:1	chr15	 80696051	 80699050	-	lnc-RP11-210M15.2.1-1	lnc-RP11-210M15.2.1-1:1	XLOC_011546	linc-BCL2A1-3	ARNT2	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30chr15:80696692-80706455"	NA	inter
CUST_46471_PI429285431	1.054295	A	0.8963382	A	1.11570591317354	0	lncRNA	50670-1_{1..574}	"gi|341915713|ref|XR_132592.1| PREDICTED: Homo sapiens uncharacterized LOC100652954 (LOC100652954), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915713|ref|XR_132592.1| PREDICTED: Homo sapiens uncharacterized LOC100652954 (LOC100652954), misc_RNA"	NA	NA	NA	NA	NA	XR_132592.1	NA	NA	NA	NA	NA	Unknown
CUST_20739_PI429285431	2.251235	A	2.1543407	A	1.06946872968569	0	lncRNA	22373-1_{1..757}	lnc-SLC39A11-1:23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC39A11-1:23	chr17	 70381186	 70381942	-	lnc-SLC39A11-1	lnc-SLC39A11-1:23	ENSG00000227036.2	LINC00511	NA	NA	NA	inter
CUST_35879_PI429285431	0.90507835	A	0.9032478	A	1.00126964589014	0	lncRNA	37267-2_{3001..6000}	n344540|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_88|NULL|-1.3060100|-0.2658911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344540|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_88|NULL|-1.3060100|-0.2658911	chrX	149112419	149115418	+	NA	NA	NA	NA	CXorf40B	NA	chrX:149100415-149106716	inter
CUST_2214_PI429285431	3.82298	P	4.2233596	P	0.757658902823364	0	lncRNA	2206-1_{1..636}	"transcript_id ""ENST00000510845.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510845.1"" | genecode_v17"	chr5	 81882595	 81883230	-	ENSG00000248870.1	ENST00000510845.1	CTD-2015A6.2	CTD-2015A6.2-001	NA	NA	NA	inter
CUST_18980_PI429285431	0.8991734	A	0.8931998	A	1.0041491680593	0	lncRNA	20673-1_{1..3000}	lnc-USP46-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP46-1:1	chr4	 53617510	 53620509	-	lnc-USP46-1	lnc-USP46-1:1	ENSG00000226887	AC104066.1	LOC100288413	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90chr4:53609684-53617807"	NA	inner
CUST_47496_PI429285431	5.0765777	P	5.771098	P	0.617914742731408	0	lncRNA	51512-1_{1..3000}	"gi|375065861|ref|NR_046312.1| Homo sapiens KIAA1656 protein (KIAA1656), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|375065861|ref|NR_046312.1| Homo sapiens KIAA1656 protein (KIAA1656), non-coding RNA"	Chr22	 30764800	 30767799	-	85371	NR_046312.1	NA	NA	NA	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CCDC157:range=chr22:30761990-307727345'pad=0,hg19_refFlat_CCDC157:range=chr22:30761990-307727345'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
LNCA_21_P0014945	6.9938626	P	7.244707	P	0.840404388069327	0	lncRNA	XR_133541	XR_133541	XR_133541	NA	NA	LOC100134264	double homeobox protein 4-like protein 4-like	NA	NA	NA	"PREDICTED: Homo sapiens double homeobox protein 4-like protein 4-like (LOC100134264), partial miscRNA [XR_133541]"	chrUn_gl000228:000027273-000027214	NA	Agilent_HUMAN_G3V2	XR_133541	XR_133541	chrUn_gl000228	    27214	    27273	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2875_PI429285431	0.92361873	A	0.9153825	A	1.0057252465394	0	lncRNA	2856-1_{1..578}	"transcript_id ""ENST00000447198.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447198.2"" | genecode_v17"	chr7	 79875725	 79876302	-	ENSG00000234223.2	ENST00000447198.2	AC003988.1	AC003988.1-001	NA	NA	NA	inter
LNCA_21_P0002998	0.9221167	A	1.3080231	A	0.765298034747498	0	lncRNA	TCONS_00006128	NA	NA	NA	NA	XLOC_002729	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002729), lincRNA [TCONS_00006128]"	chr3:96232300-96232359	hs|3q11.2	Agilent_HUMAN_G3V2	TCONS_00006128	TCONS_00006128	chr3	 96232300	 96232359	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48030_PI429285431	4.1185427	P	4.44738	P	0.796177882713559	0	lncRNA	51911-2_{3001..4230}	"gi|410173781|ref|XR_172395.1| PREDICTED: Homo sapiens uncharacterized LOC101060697 (LOC101060697), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173781|ref|XR_172395.1| PREDICTED: Homo sapiens uncharacterized LOC101060697 (LOC101060697), misc_RNA"	NA	NA	NA	NA	NA	XR_172395.1	NA	NA	NA	NA	NA	Unknown
CUST_4801_PI429285431	3.5248368	P	3.3482585	P	1.13020016114332	0	lncRNA	4745-1_{1..554}	"transcript_id ""ENST00000556071.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556071.1"" | genecode_v17"	chr14	 46940562	 46941115	+	ENSG00000258700.1	ENST00000556071.1	LINC00871	LINC00871-004	NA	NA	NA	inter
CUST_7942_PI429285431	7.6316504	P	7.580657	P	1.03597802418655	0	lncRNA	9553-2_{3001..3734}	lnc-TUB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TUB-1:1	chr11	  8199844	  8200577	+	lnc-TUB-1	lnc-TUB-1:1	ENSG00000246820	RP11-379P15.1	RIC3	NA	chr11:8186844-8190590	inter
CUST_34267_PI429285431	0.9046413	A	0.89763415	A	1.00486880054357	0	lncRNA	35768-1_{1..1123}	n341125|AB096253|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3591|NULL|-1.2391200|-0.3529316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341125|AB096253|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3591|NULL|-1.2391200|-0.3529316	chr11	112851124	112852246	+	NA	NA	NA	NA	NCAM1	NA	chr11:112841124-112862231	inner
CUST_44435_PI429285431	0.9090887	A	1.0449411	A	0.910131933572504	0	lncRNA	49047-1_{1..1200}	"gi|334278885|ref|NR_038331.1| Homo sapiens uncharacterized LOC100505545 (LOC100505545), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|334278885|ref|NR_038331.1| Homo sapiens uncharacterized LOC100505545 (LOC100505545), non-coding RNA"	Chr4	147030607	147031806	-	100505545	NR_038331.1	NA	NA	NA	NA	NA	inter
CUST_47092_PI429285431	0.9120616	A	0.898317	A	1.00957255735825	0	lncRNA	51175-1_{1..2085}	"gi|224809365|ref|NR_027301.1| Homo sapiens long intergenic non-protein coding RNA 662 (LINC00662), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224809365|ref|NR_027301.1| Homo sapiens long intergenic non-protein coding RNA 662 (LINC00662), non-coding RNA"	Chr19	 28281401	 28283485	-	148189	NR_027301.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50"	NA	inter
CUST_6745_PI429285431	6.4981422	P	6.4194083	P	1.05609081516908	0	lncRNA	6693-1_{1..566}	"transcript_id ""ENST00000443747.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443747.1"" | genecode_v17"	chr20	 58090246	 58090811	+	ENSG00000227282.1	ENST00000443747.1	RP11-164D18.2	RP11-164D18.2-001	NA	NA	NA	inter
CUST_2685_PI429285431	0.91618717	A	0.90511143	A	1.00770666258112	0	lncRNA	2671-1_{1..772}	"transcript_id ""ENST00000429657.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429657.1"" | genecode_v17"	chr6	159804563	159805334	+	ENSG00000234777.1	ENST00000429657.1	RP11-125D12.2	RP11-125D12.2-001	NA	NA	NA	inter
CUST_16062_PI429285431	0.9002667	A	0.89496917	A	1.00367871791719	0	lncRNA	17765-1_{1..283}	lnc-IL12B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL12B-1:1	chr5	158893135	158893417	-	lnc-IL12B-1	lnc-IL12B-1:1	XLOC_005064	linc-IL12B	NA	NA	NA	inter
CUST_6113_PI429285431	5.395389	P	6.3416815	P	0.518964406880329	0	lncRNA	6039-1_{1..194}	"transcript_id ""ENST00000584201.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584201.1"" | genecode_v17"	chr18	 19747631	 19747824	-	ENSG00000266010.1	ENST00000584201.1	RP11-627G18.3	RP11-627G18.3-004	GATA6	NA	chr18:19749416-19758331	inter
CUST_202_PI429201921	2.009091	A	3.4470165	P	0.369097660934318	0	lncRNA	162-1_{1..3000}	TC07002303.hg.1	TCONS_l2_00027114-XLOC_l2_013393 // Broad TUCP // linc-C7orf69 chr7:+:47801073-47806369 // chr7 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00025864-XLOC_l2_013393 // Broad TUCP // linc-C7orf69 chr7:+:47803006-47806316 // chr7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr7:+:47801073-47806369	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00027114-XLOC_l2_013393	linc-C7orf69	chr7	 47801073	 47806369	+	NA	NA	NA	NA	PADI1	NA	chr1:17531621-17534112	Unknown
CUST_12801_PI429285431	0.9223813	A	0.90986526	A	1.00871319868288	0	lncRNA	14428-1_{1..524}	lnc-GPR26-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR26-3:1	chr10	125321542	125322065	+	lnc-GPR26-3	lnc-GPR26-3:1	XLOC_008653	linc-GPR26-2	NA	NA	NA	inter
CUST_28521_PI429285431	1.1757667	A	1.0333066	A	1.10378569995967	0	lncRNA	30190-1_{1..2864}	n325866|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050713|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050713|-0.4594800|-0.2962160	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325866|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050713|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050713|-0.4594800|-0.2962160	chr10	122928203	122931066	+	NA	NA	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90"	NA	inter
CUST_26561_PI429285431	6.053692	P	6.067792	P	0.990274228975089	0	lncRNA	28066-1_{1..539}	lnc-AP3S1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP3S1-4:2	chr5	114955765	114956303	+	lnc-AP3S1-4	lnc-AP3S1-4:2	ENSG00000249249.1	AC010226.4	TMED7	NA	chr5:114948905-114961876	inner
CUST_4736_PI429285431	4.5439744	P	4.4278636	P	1.08380920096206	0	lncRNA	4680-1_{1..212}	"transcript_id ""ENST00000554983.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554983.1"" | genecode_v17"	chr14	 21338438	 21338649	-	ENSG00000259130.1	ENST00000554983.1	RP11-219E7.3	RP11-219E7.3-002	NA	NA	NA	inter
CUST_16431_PI429285431	1.6189256	A	1.7585887	A	0.907731105103021	0	lncRNA	18131-1_{1..334}	lnc-NPBWR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NPBWR2-1:1	chr20	 62774889	 62775222	-	lnc-NPBWR2-1	lnc-NPBWR2-1:1	XLOC_013850	linc-NPBWR2	NA	NA	NA	inter
CUST_31219_PI429285431	1.1615539	A	0.9070021	A	1.1929650687087	0	lncRNA	33010-1_{1..671}	n337665|AF088019|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|46|NULL|-1.0876200|-0.2440620	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337665|AF088019|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|46|NULL|-1.0876200|-0.2440620	chrX	 43696826	 43697496	-	NA	NA	NA	NA	MAOB	NA	chrX:43686826-43707488	inner
CUST_42045_PI429285431	2.2071805	A	1.7904938	A	1.33485838994971	0	lncRNA	43935-1_{1..68}	ENST00000581158 ncrna:miRNA chromosome:GRCh37:5:180649566:180649633:-1 gene:ENSG00000264732 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581158 ncrna:miRNA chromosome:GRCh37:5:180649566:180649633:-1 gene:ENSG00000264732 gene_biotype:miRNA transcript_biotype:miRNA	chr5	180649566	180649633	-	ENSG00000264732	ENST00000581158	NA	NA	TRIM41	NA	chr5:180650306-180659633	inter
CUST_35071_PI429285431	10.200613	P	9.811352	P	1.30972234537356	0	lncRNA	36481-1_{1..469}	n342024|AK130978|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4505|NULL|-0.4921320|-0.1071798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342024|AK130978|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4505|NULL|-0.4921320|-0.1071798	chr12	115110665	115111133	-	NA	NA	NA	NA	TBX3	NA	chr12:115108059-115121134	inner
LNCA_21_P0002082	0.9430716	A	0.92257905	A	1.0143057144354	0	lncRNA	ENST00000458182	NA	NA	NA	NA	XLOC_002235	NA	ENST00000458182	NA	NA	"BROAD Institute lincRNA (XLOC_002235), lincRNA [TCONS_00003348]"	chr2:104742615-104741729	hs|2q12.1	Agilent_HUMAN_G3V2	ENST00000458182	ENST00000458182	chr2	104741729	104742615	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52101_PI429285431	3.2836711	P	3.1591961	A	1.09011096662252	0	lncRNA	55627-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017567 range=chr22:17518205-17539887 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017567 range=chr22:17518205-17539887 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17518205	 17521204	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009075	5.3324947	P	5.6694794	P	0.791694261864627	0	lncRNA	TCONS_00024747	NA	NA	NA	NA	XLOC_012031	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012031), lincRNA [TCONS_00024747]"	chr16:84983186-84983127	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024747	TCONS_00024747	chr16	 84983127	 84983186	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39674_PI429285431	0.93391895	A	0.92836356	A	1.00385812639737	0	lncRNA	40615-1_{1..805}	n405304|NR_001435_5|lncRNA|Homosapiens||RefGeneNoncode|NR_001435_5||-0.9636540|-0.3983718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405304|NR_001435_5|lncRNA|Homosapiens||RefGeneNoncode|NR_001435_5||-0.9636540|-0.3983718	chr6	  4524392	  4525196	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001494	0.96241826	A	0.92622215	A	1.02540661510876	0	lncRNA	TCONS_00001475	NA	NA	NA	NA	XLOC_000801	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000801), lincRNA [TCONS_00001475]"	chr1:41431338-41431279	hs|1p34.2	Agilent_HUMAN_G3V2	TCONS_00001475	TCONS_00001475	chr1	 41431279	 41431338	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10409_PI429285431	0.91039526	A	1.0771043	A	0.89087255197708	0	lncRNA	11936-1_{1..280}	lnc-HIVEP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HIVEP1-1:1	chr6	 12008512	 12008791	+	lnc-HIVEP1-1	lnc-HIVEP1-1:1	XLOC_005174	linc-HIVEP1-1	HIVEP1	NA	chr6:12012724-12018675	inter
CUST_178_PI429285431	0.9175565	A	0.92085963	A	0.997713063785903	0	lncRNA	168-1_{1..785}	"transcript_id ""ENST00000418743.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418743.1"" | genecode_v17"	chr1	 20724598	 20725382	-	ENSG00000236963.1	ENST00000418743.1	RP4-749H3.1	RP4-749H3.1-002	NA	NA	NA	inter
CUST_20376_PI429285431	2.1629288	A	0.9570586	A	2.3067636600943	0	lncRNA	22018-1_{1..546}	lnc-C2orf42-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:5	chr2	 70314413	 70314958	-	lnc-C2orf42-3	lnc-C2orf42-3:5	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_47485_PI429285431	4.242367	P	3.9289665	P	1.2426331956495	0	lncRNA	51506-1_{1..3000}	"gi|402747156|ref|NR_073135.1| Homo sapiens Hermansky-Pudlak syndrome 4 (HPS4), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402747156|ref|NR_073135.1| Homo sapiens Hermansky-Pudlak syndrome 4 (HPS4), transcript variant 5, non-coding RNA"	Chr22	 26846848	 26849847	-	89781	NR_073135.1	NA	NA	NA	NA	NA	inter
CUST_9026_PI429285431	1.9641573	A	2.7458277	A	0.581692899916823	0	lncRNA	10554-1_{1..1587}	lnc-UBE2N-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-UBE2N-3:1	chr12	 94131475	 94133061	-	lnc-UBE2N-3	lnc-UBE2N-3:1	ENSG00000249585	ENSG00000258274.1	CRADD	"hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0,hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20chr12:94121475-94141599"	NA	inner
CUST_14837_PI429285431	1.3099083	A	2.0158062	A	0.613060815005807	0	lncRNA	16498-1_{1..276}	lnc-HK2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HK2-1:7	chr2	 75165435	 75165710	+	lnc-HK2-1	lnc-HK2-1:7	XLOC_001537	linc-POLE4	NA	NA	NA	inter
CUST_312_PI429285431	0.91167384	A	0.9069614	A	1.00327175504463	0	lncRNA	303-1_{1..787}	"transcript_id ""ENST00000437598.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437598.1"" | genecode_v17"	chr1	 88365592	 88366378	-	ENSG00000224235.1	ENST00000437598.1	RP5-1027O11.1	RP5-1027O11.1-001	NA	NA	NA	inter
CUST_25562_PI429285431	1.6507348	A	1.1786515	A	1.38711105744673	0	lncRNA	27091-1_{1..442}	lnc-MYOC-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYOC-1:2	chr1	171196790	171197231	-	lnc-MYOC-1	lnc-MYOC-1:2	ENSG00000225243.1	RP1-127D3.4	NA	"hg19_refFlat_FMO2:range=chr1:171154853-1711780925'pad=0,hg19_refFlat_FMO2:range=chr1:171154853-1711780925'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00"	NA	inter
LNCA_21_P0002933	2.6213946	A	2.8280702	A	0.866531680162199	0	lncRNA	TCONS_00005953	NA	NA	NA	NA	XLOC_002587	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002587), lincRNA [TCONS_00005953]"	chr3:16573061-16573120	hs|3p24.3	Agilent_HUMAN_G3V2	TCONS_00005953	TCONS_00005953	chr3	 16573061	 16573120	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24903_PI429285431	2.3222284	A	2.3785152	A	0.961736247676334	0	lncRNA	26444-1_{1..700}	lnc-YRDC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YRDC-1:1	chr1	 38266302	 38267001	-	lnc-YRDC-1	lnc-YRDC-1:1	ENSG00000233728.1	RP11-109P14.9	YRDC	"hg19_refFlat_MANEAL:range=chr1:38259855-382658755'pad=0,hg19_refFlat_MANEAL:range=chr1:38259855-382658755'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10;hg19_refFlat_MANEAL:range=chr1:38261448-382658755'pad=0,hg19_refFlat_MANEAL:range=chr1:38261448-382658755'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10chr1:38268614-38273865"	NA	inner
CUST_23232_PI429285431	1.0120224	A	1.2187482	A	0.866501528860428	0	lncRNA	24804-1_{1..301}	lnc-UAP1L1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UAP1L1-2:1	chr9	139956784	139957084	+	lnc-UAP1L1-2	lnc-UAP1L1-2:1	ENSG00000229257.1	RP11-229P13.22	C9orf140	NA	chr9:139956579-139965028	inner
CUST_31435_PI429285431	5.312495	P	5.8567133	P	0.685762870901023	0	lncRNA	33205-2_{3001..6000}	n337904|BX538221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|287|NULL|-0.8754770|-0.2419007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337904|BX538221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|287|NULL|-0.8754770|-0.2419007	chr15	 67155640	 67158639	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1145_PI429285431	7.0656347	P	6.802351	P	1.20020737497455	0	lncRNA	1134-1_{1..797}	"transcript_id ""ENST00000448255.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448255.1"" | genecode_v17"	chr2	156868129	156868925	-	ENSG00000226383.1	ENST00000448255.1	AC093375.1	AC093375.1-001	NA	NA	NA	inter
CUST_48571_PI429285431	4.7307076	P	5.092618	P	0.778133501804201	0	lncRNA	52419-1_{1..910}	hg19_lincRNAsTranscripts_TCONS_l2_00013425 range=chr2:747347-748549 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013425 range=chr2:747347-748549 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	   747347	   748256	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28555_PI429285431	4.88295	P	4.94323	P	0.959077962249122	0	lncRNA	30229-1_{1..849}	n325906|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049927|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049927|-1.0788300|-0.2806581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325906|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049927|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049927|-1.0788300|-0.2806581	chr10	102931436	102932284	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SMARCE1:range=chr17:38785037-388020545'pad=0,hg19_refFlat_SMARCE1:range=chr17:38785037-388020545'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-25.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30"	NA	inter
CUST_6020_PI429285431	7.4363146	P	7.84963	P	0.750895785723961	0	lncRNA	5946-1_{1..333}	"transcript_id ""ENST00000570919.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000570919.1"" | genecode_v17"	chr17	 80687040	 80687372	-	ENSG00000263321.1	ENST00000570919.1	RP11-388C12.5	RP11-388C12.5-001	FN3K	NA	chr17:80693452-80702019	inter
CUST_30179_PI429285431	3.688584	P	3.8281653	P	0.907782574406905	0	lncRNA	31953-1_{1..342}	n334877|AJ421672|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247904|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247904|-1.0418800|-0.2699395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334877|AJ421672|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247904|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247904|-1.0418800|-0.2699395	chrX	 49967363	 49967704	+	NA	NA	NA	NA	CCNB3	NA	chrX:50027540-50038245	inner
CUST_45785_PI429285431	1.4405422	A	1.23423	A	1.15373524698946	0	lncRNA	50127-1_{1..3000}	"gi|385862217|ref|NR_047673.1| Homo sapiens leucine rich repeat containing 4C (LRRC4C), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385862217|ref|NR_047673.1| Homo sapiens leucine rich repeat containing 4C (LRRC4C), transcript variant 3, non-coding RNA"	Chr11	 40135749	 40138748	-	57689	NR_047673.1	NA	NA	NA	NA	NA	inter
CUST_36348_PI429285431	1.3683982	A	1.3735211	A	0.996455373382559	0	lncRNA	37575-2_{3001..6000}	n344872|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_421|NULL|-1.3011900|-0.2820272	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344872|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_421|NULL|-1.3011900|-0.2820272	chr6	 42730240	 42733239	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-61.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-55.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30"	NA	inter
CUST_50898_PI429285431	6.8380837	P	6.9489813	P	0.926011746907784	0	lncRNA	54540-1_{1..1150}	hg19_lincRNAsTranscripts_TCONS_l2_00005433 range=chr12:5131731-5135165 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005433 range=chr12:5131731-5135165 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	  5131731	  5132880	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15600_PI429285431	0.9289514	A	0.94293493	A	0.990354177884555	0	lncRNA	17287-1_{1..3000}	lnc-SMAD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMAD2-1:1	chr18	 45355845	 45358844	-	lnc-SMAD2-1	lnc-SMAD2-1:1	XLOC_012839	linc-IER3IP1	SMAD2	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70chr18:45359466-45366490"	NA	inter
CUST_13263_PI429285431	1.5097837	A	2.0617838	A	0.682073870161918	0	lncRNA	14894-1_{1..1450}	lnc-LZTS1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LZTS1-2:2	chr8	 20831244	 20832693	-	lnc-LZTS1-2	lnc-LZTS1-2:2	XLOC_007018	linc-LZTS1-2	NA	NA	NA	inter
CUST_1818_PI429285431	1.1002386	A	0.9164624	A	1.13585305039393	0	lncRNA	1805-1_{1..702}	"transcript_id ""ENST00000504840.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504840.1"" | genecode_v17"	chr4	 85292546	 85293247	-	ENSG00000248749.1	ENST00000504840.1	RP11-42A4.1	RP11-42A4.1-001	NA	NA	NA	inter
CUST_42747_PI429285431	0.95338315	A	0.9486873	A	1.0032602181763	0	lncRNA	45702-1_{1..137}	ENST00000516465 ncrna:snoRNA chromosome:GRCh37:17:70814975:70815111:-1 gene:ENSG00000252274 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516465 ncrna:snoRNA chromosome:GRCh37:17:70814975:70815111:-1 gene:ENSG00000252274 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 70814975	 70815111	-	ENSG00000252274	ENST00000516465	NA	NA	SLC39A11	NA	chr17:70804975-70825111	inner
CUST_2061_PI429285431	1.3653839	A	1.1310377	A	1.17637350789645	0	lncRNA	2053-1_{1..3000}	"transcript_id ""ENST00000564741.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564741.1"" | genecode_v17"	chr5	  6019142	  6022141	-	ENSG00000261037.1	ENST00000564741.1	CTC-471C19.1	CTC-471C19.1-001	NA	NA	NA	inter
CUST_5605_PI429285431	0.9238874	A	0.9180333	A	1.00406599673575	0	lncRNA	5534-1_{1..391}	"transcript_id ""ENST00000563347.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563347.1"" | genecode_v17"	chr16	 72258464	 72258854	-	ENSG00000261673.1	ENST00000563347.1	RP11-328J14.1	RP11-328J14.1-001	NA	NA	NA	inter
CUST_168_PI429201921	9.550883	P	9.860157	P	0.807047783555105	0	lncRNA	142-2_{3001..4242}	TC19002350.hg.1	 TCONS_l2_00012881-XLOC_l2_006930 // Broad TUCP // linc-PALM3 chr19:-:14192336-14196579 // chr19 // 100 // 100 // 0 // --- // 0///TCONS_l2_00012880-XLOC_l2_006930 // Broad TUCP // linc-PALM3 chr19:-:14192336-14196579 // chr19 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr19:-:14192336-14196579	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00012880-XLOC_l2_006930	linc-PALM3	chr19	 14192336	 14196579	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46021_PI429285431	4.5874863	P	4.522382	P	1.04616056949955	0	lncRNA	50303-1_{1..2794}	"gi|219879803|ref|NR_026583.1| Homo sapiens Rac GTPase activating protein 1 pseudogene (RACGAP1P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219879803|ref|NR_026583.1| Homo sapiens Rac GTPase activating protein 1 pseudogene (RACGAP1P), non-coding RNA"	Chr12	 45456401	 45459194	-	83956	NR_026583.1	NA	NA	NA	NA	NA	inter
CUST_516_PI429285431	1.1928641	A	1.9753796	A	0.581352256397008	0	lncRNA	508-1_{1..746}	"transcript_id ""ENST00000426262.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426262.1"" | genecode_v17"	chr1	188477669	188478414	+	ENSG00000225006.1	ENST00000426262.1	RP11-669M2.1	RP11-669M2.1-001	NA	NA	NA	inter
CUST_36214_PI429285431	6.1801376	P	6.277072	P	0.935017712465727	0	lncRNA	37469-1_{1..3000}	n344759|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_308|NULL|-1.3519900|-0.2811059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344759|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_308|NULL|-1.3519900|-0.2811059	chr6	 14790200	 14793199	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30"	NA	inter
CUST_17677_PI429285431	1.0849718	A	1.0848373	A	1.00009323264168	0	lncRNA	19406-1_{1..657}	lnc-ATP11B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP11B-4:1	chr3	182205514	182206170	+	lnc-ATP11B-4	lnc-ATP11B-4:1	XLOC_002943	linc-ATP11B-2	NA	NA	NA	inter
CUST_33903_PI429285431	1.5838418	A	1.076779	A	1.42115390415697	0	lncRNA	35445-1_{1..722}	n340695|AF156166|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3158|NULL|-1.2697400|-0.3669444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340695|AF156166|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3158|NULL|-1.2697400|-0.3669444	chr5	153670311	153671032	-	NA	NA	NA	NA	GALNT10	NA	chr5:153660311-153681015	inner
CUST_26221_PI429285431	0.9192836	A	1.2911899	A	0.77276073719817	0	lncRNA	27728-1_{1..1237}	lnc-SH3KBP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SH3KBP1-1:1	chrX	 19933763	 19934999	-	lnc-SH3KBP1-1	lnc-SH3KBP1-1:1	ENSG00000242500.1	RP11-24O6.2	CXorf23	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.70chrX:19930978-19944282"	NA	inner
CUST_6017_PI429285431	0.9332135	A	0.92043704	A	1.00889529732057	0	lncRNA	5942-1_{1..958}	"transcript_id ""ENST00000580125.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580125.1"" | genecode_v17"	chr17	 79923508	 79924465	-	ENSG00000264735.1	ENST00000580125.1	RP11-498C9.17	RP11-498C9.17-001	NOTUM	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50chr17:79913508-79919057"	NA	inter
CUST_36263_PI429285431	12.068325	P	12.048552	P	1.0137999514847	0	lncRNA	37501-1_{1..764}	n344794|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_343|NULL|-1.3409100|-0.3003945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n344794|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_343|NULL|-1.3409100|-0.3003945	chr11	119607516	119608279	+	NA	NA	NA	NA	PVRL1	NA	chr11:119597516-119599435	inter
CUST_38130_PI429285431	7.857788	P	6.098564	P	3.38515994235152	0	lncRNA	39202-2_{3001..4230}	n381271|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gcd.2||-1.2947700|-0.3987245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381271|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gcd.2||-1.2947700|-0.3987245	chr1	162498161	162499390	+	NA	NA	NA	NA	UHMK1	NA	chr1:162485161-162499419	inner
CUST_9604_PI429285431	0.9255779	A	0.92494595	A	1.00043813031181	0	lncRNA	11119-1_{1..297}	lnc-ARHGAP10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGAP10-2:1	chr4	149621276	149621572	+	lnc-ARHGAP10-2	lnc-ARHGAP10-2:1	XLOC_003729	linc-DCLK2-5	NA	NA	NA	inter
CUST_22773_PI429285431	4.073183	P	4.381242	P	0.807727744355843	0	lncRNA	24353-2_{3001..3951}	lnc-BCL7C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-BCL7C-2:1	chr16	 30933640	 30934590	-	lnc-BCL7C-2	lnc-BCL7C-2:1	ENSG00000260852.1	FBXL19-AS1	FBXL19	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr16:30935896-30944590"	NA	inter
CUST_50447_PI429285431	1.3695456	A	0.89699674	A	1.38755875263835	0	lncRNA	54150-1_{1..577}	hg19_lincRNAsTranscripts_TCONS_l2_00030224 range=chrX:56755685-56758734 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030224 range=chrX:56755685-56758734 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 56755685	 56756261	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003886	9.317606	P	8.974867	P	1.26816195359945	0	lncRNA	TCONS_00009017	NA	NA	NA	NA	XLOC_003863	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003863), lincRNA [TCONS_00009017]"	chr4:4576914-4576855	hs|4p16.2	Agilent_HUMAN_G3V2	TCONS_00009017	TCONS_00009017	chr4	  4576855	  4576914	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19085_PI429285431	2.0109627	A	1.8113555	A	1.14838564352182	0	lncRNA	20775-1_{1..1267}	lnc-SPRYD7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPRYD7-1:1	chr13	 50699438	 50700704	-	lnc-SPRYD7-1	lnc-SPRYD7-1:1	ENSG00000231607	DLEU2	NA	NA	NA	inter
CUST_18283_PI429285431	0.9251608	A	0.97913164	A	0.963281363831787	0	lncRNA	20014-1_{1..562}	lnc-HSCB-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HSCB-1:5	chr22	 28393399	 28393960	+	lnc-HSCB-1	lnc-HSCB-1:5	ENSG00000235954	TTC28-AS1	TTC28	NA	chr22:28383399-28403763	inner
CUST_37238_PI429285431	6.4563894	P	6.6496215	P	0.874644041324766	0	lncRNA	38346-2_{3001..3452}	n345669|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1218|NULL|-1.5360900|-0.2628184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345669|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1218|NULL|-1.5360900|-0.2628184	chr5	 43069488	 43069939	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60"	NA	inter
CUST_25594_PI429285431	0.9125335	A	0.9066292	A	1.00410093481244	0	lncRNA	27124-1_{1..581}	lnc-KIF26B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIF26B-2:1	chr1	246276991	246277571	+	lnc-KIF26B-2	lnc-KIF26B-2:1	ENSG00000226876.1	RP11-36N20.1	SMYD3	NA	chr1:246266991-246287168	inner
CUST_20568_PI429285431	6.0308876	P	6.3463497	P	0.803593555839179	0	lncRNA	22209-1_{1..469}	lnc-HYI-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HYI-3:1	chr1	 44192904	 44193372	-	lnc-HYI-3	lnc-HYI-3:1	ENSG00000229444.1	RP11-184I16.4	ST3GAL3	NA	chr1:44182904-44203014	inter
CUST_47132_PI429285431	1.3091308	A	1.197352	A	1.08055971343121	0	lncRNA	51213-1_{1..630}	"gi|397139719|ref|XR_109536.2| PREDICTED: Homo sapiens uncharacterized LOC100505585 (LOC100505585), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139719|ref|XR_109536.2| PREDICTED: Homo sapiens uncharacterized LOC100505585 (LOC100505585), misc_RNA"	Chr19	 42432798	 42433427	+	100505585	XR_109536.3	NA	NA	NA	NA	NA	inter
CUST_23738_PI429285431	11.7336035	P	12.013065	P	0.823898488029986	0	lncRNA	25301-1_{1..1515}	lnc-EIF6-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF6-1:10	chr20	 33865812	 33867326	-	lnc-EIF6-1	lnc-EIF6-1:10	ENSG00000126005.10	MT1P3	MMP24	NA	chr20:33855812-33864804	inter
CUST_7184_PI429285431	5.5508513	P	5.849122	P	0.813226594091014	0	lncRNA	7413-1_{1..270}	"transcript_id ""ENST00000517197.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517197.1"" | genecode_v17"	chr2	230101056	230101325	-	ENSG00000253006.1	ENST00000517197.1	RN7SKP283	RN7SKP283-201	PID1	NA	chr2:230091056-230111325	inner
CUST_37126_PI429285431	0.9204736	A	0.91415054	A	1.00439242977555	0	lncRNA	38249-1_{1..862}	n345567|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1116|NULL|-1.2993700|-0.4365862	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345567|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1116|NULL|-1.2993700|-0.4365862	chr2	208362009	208362870	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00"	NA	inter
CUST_43583_PI429285431	0.9114976	A	0.9076662	A	1.00265925366669	0	lncRNA	48352-2_{3001..6000}	"gi|387942412|ref|NR_049745.1| Homo sapiens HYDIN2, axonemal central pair apparatus protein (pseudogene) (HYDIN2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387942412|ref|NR_049745.1| Homo sapiens HYDIN2, axonemal central pair apparatus protein (pseudogene) (HYDIN2), non-coding RNA"	NA	NA	NA	NA	NA	NR_049745.1	NA	NA	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-59.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20"	NA	Unknown
LNCA_21_P0008921	0.97102684	A	0.92364335	A	1.03338904149971	0	lncRNA	TCONS_00024367	NA	NA	NA	NA	XLOC_011691	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011691), lincRNA [TCONS_00024367]"	chr16:31520781-31520840	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_00024367	TCONS_00024367	chr16	 31520781	 31520840	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36579_PI429285431	1.3742574	A	0.92506266	A	1.36527799542532	0	lncRNA	37772-1_{1..257}	n345074|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_623|NULL|-1.6537300|-0.3814513	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345074|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_623|NULL|-1.6537300|-0.3814513	chrX	131373647	131373903	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42325_PI429285431	1.416294	A	1.4291033	A	0.991160569348881	0	lncRNA	44966-1_{1..128}	ENST00000391263 ncrna:snoRNA chromosome:GRCh37:17:46958202:46958329:1 gene:ENSG00000212565 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391263 ncrna:snoRNA chromosome:GRCh37:17:46958202:46958329:1 gene:ENSG00000212565 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 46958202	 46958329	+	ENSG00000212565	ENST00000391263	NA	NA	NA	NA	NA	inter
CUST_51877_PI429285431	2.5000286	A	2.7647376	A	0.832366610977896	0	lncRNA	55427-1_{1..567}	hg19_lincRNAsTranscripts_TCONS_l2_00013207 range=chr19:53482073-53496812 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013207 range=chr19:53482073-53496812 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 53482073	 53482639	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33285_PI429285431	3.6826098	P	4.2420435	P	0.678568469425286	0	lncRNA	34868-1_{1..3000}	n339995|BC037343|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2448|NULL|-1.0342600|-0.3453720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339995|BC037343|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2448|NULL|-1.0342600|-0.3453720	chr10	 22507002	 22510001	+	NA	NA	NA	NA	EBLN1	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60chr10:22497743-22498912"	NA	inter
CUST_36168_PI429285431	6.57205	P	6.887618	P	0.803534570792544	0	lncRNA	37441-1_{1..3000}	n344729|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_278|NULL|-1.3257600|-0.2993432	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344729|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_278|NULL|-1.3257600|-0.2993432	chr12	 46837072	 46840071	-	NA	NA	NA	NA	NA	"hg19_refFlat_NSD1:range=chr5:176562105-1767224605'pad=0,hg19_refFlat_NSD1:range=chr5:176562105-1767224605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NSD1:range=chr5:176562172-1767224605'pad=0,hg19_refFlat_NSD1:range=chr5:176562172-1767224605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90"	NA	inter
CUST_33239_PI429285431	3.3551035	P	3.3797836	P	0.983038551169192	0	lncRNA	34826-1_{1..1160}	n339941|BC039685|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2390|NULL|-1.0809500|-0.2283146	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339941|BC039685|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2390|NULL|-1.0809500|-0.2283146	chr10	  3206389	  3207548	+	NA	NA	NA	NA	PITRM1	"hg19_refFlat_PITRM1:range=chr10:3180223-32149645'pad=0,hg19_refFlat_PITRM1:range=chr10:3180223-32149645'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PITRM1:range=chr10:3180223-32149715'pad=0,hg19_refFlat_PITRM1:range=chr10:3180223-32149715'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chr10:3196389-3215033"	NA	inner
CUST_5571_PI429285431	4.7428193	P	5.2657437	P	0.695959664587463	0	lncRNA	5500-1_{1..505}	"transcript_id ""ENST00000562304.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562304.1"" | genecode_v17"	chr16	 58881711	 58882215	-	ENSG00000261638.1	ENST00000562304.1	RP11-700H13.1	RP11-700H13.1-002	NA	NA	NA	inter
CUST_18285_PI429285431	1.0044214	A	0.9122804	A	1.06595091035959	0	lncRNA	20016-1_{1..477}	lnc-ASAH2C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ASAH2C-1:1	chr10	 47644720	 47645196	-	lnc-ASAH2C-1	lnc-ASAH2C-1:1	ENSG00000243536	RP11-292F22.6	NA	NA	NA	inter
CUST_912_PI429285431	0.9444313	A	1.1609492	A	0.860640179470521	0	lncRNA	901-1_{1..1024}	"transcript_id ""ENST00000412313.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412313.1"" | genecode_v17"	chr2	 66554481	 66555504	+	ENSG00000225815.2	ENST00000412313.1	AC092669.6	AC092669.6-001	NA	NA	NA	inter
CUST_11984_PI429285431	4.017311	P	4.357255	P	0.790071978893402	0	lncRNA	13564-1_{1..808}	lnc-CYB5D2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CYB5D2-1:1	chr17	  4063283	  4064090	+	lnc-CYB5D2-1	lnc-CYB5D2-1:1	XLOC_012083	linc-SPNS3	ANKFY1	NA	chr17:4066665-4073879	inter
CUST_27113_PI429285431	3.1652484	A	4.5936604	P	0.371539627918067	0	lncRNA	28646-1_{1..376}	n324226|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326474|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326474|-1.0312600|-0.4054524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324226|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326474|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326474|-1.0312600|-0.4054524	chr7	 20304441	 20304816	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10"	NA	inter
CUST_17634_PI429285431	2.9763875	P	3.6776514	P	0.615033159272122	0	lncRNA	19362-1_{1..685}	lnc-TSHZ1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSHZ1-1:3	chr18	 72879948	 72880632	+	lnc-TSHZ1-1	lnc-TSHZ1-1:3	XLOC_012720	linc-TSHZ1-2	NA	NA	NA	inter
CUST_17_PI429285431	7.9501233	P	7.908891	P	1.02899238094289	0	lncRNA	16-1_{1..639}	"transcript_id ""ENST00000523411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000523411.1"" | genecode_v17"	chr8	 36924959	 36925597	-	ENSG00000254038.1	ENST00000523411.1	RP11-419C23.1	RP11-419C23.1-001	NA	NA	NA	inter
CUST_15051_PI429285431	2.262671	A	6.055443	P	0.0721542407737436	0	lncRNA	16714-1_{1..268}	lnc-ZMAT4-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZMAT4-3:3	chr8	 40200797	 40201064	-	lnc-ZMAT4-3	lnc-ZMAT4-3:3	XLOC_007064	linc-ADAM2-3	NA	NA	NA	inter
CUST_27306_PI429285431	0.9134973	A	0.90239084	A	1.00772812039264	0	lncRNA	28864-1_{1..542}	n324458|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041439|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041439|-1.2021000|-0.4627401	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324458|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041439|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041439|-1.2021000|-0.4627401	chr6	 88138029	 88138570	+	NA	NA	NA	NA	C6orf165	NA	chr6:88128029-88169238	inner
CUST_44635_PI429285431	4.445514	P	5.1105747	P	0.630662169355943	0	lncRNA	49200-2_{3001..4307}	"gi|302371203|ref|NR_036494.1| Homo sapiens centrosomal protein 192kDa pseudogene (LOC643201), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|302371203|ref|NR_036494.1| Homo sapiens centrosomal protein 192kDa pseudogene (LOC643201), non-coding RNA"	Chr5	175573088	175574394	-	643201	NR_036494.1	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10"	NA	inter
CUST_43071_PI429285431	4.414657	P	4.2818074	P	1.09645727768648	0	lncRNA	47117-1_{1..175}	ENST00000517280 ncrna:snRNA chromosome:GRCh37:12:127805900:127806074:1 gene:ENSG00000253089 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517280 ncrna:snRNA chromosome:GRCh37:12:127805900:127806074:1 gene:ENSG00000253089 gene_biotype:snRNA transcript_biotype:snRNA	chr12	127805900	127806074	+	ENSG00000253089	ENST00000517280	NA	NA	NA	NA	NA	inter
CUST_6620_PI429285431	1.1985714	A	0.93171847	A	1.20318036615035	0	lncRNA	6567-1_{1..495}	"transcript_id ""ENST00000596296.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596296.1"" | genecode_v17"	chr19	 58929927	 58930421	+	ENSG00000268543.1	ENST00000596296.1	CTD-2619J13.16	CTD-2619J13.16-001	ZNF584	NA	chr19:58920063-58929694	inter
CUST_51885_PI429285431	1.942624	A	1.9560056	A	0.990767465689607	0	lncRNA	55434-1_{1..405}	hg19_lincRNAsTranscripts_TCONS_l2_00012693 range=chr19:53812504-53819086 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012693 range=chr19:53812504-53819086 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 53812504	 53812908	+	NA	NA	NA	NA	ZNF845	NA	chr19:53818331-53829086	inter
CUST_28569_PI429285431	6.0039954	P	6.3077583	P	0.810136604751525	0	lncRNA	30247-1_{1..403}	n325926|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049142|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049142|-1.0471700|-0.3043855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325926|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049142|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049142|-1.0471700|-0.3043855	chr10	 87181678	 87182080	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30468_PI429285431	11.532553	P	10.020935	P	2.85129636217866	0	lncRNA	32248-1_{1..386}	n335613|CR598627|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000277822|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000277822|-1.1923600|-0.3563015	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335613|CR598627|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000277822|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000277822|-1.1923600|-0.3563015	chr7	128411142	128411527	+	NA	NA	NA	NA	CALU	NA	chr7:128401142-128413477	inner
CUST_16145_PI429285431	0.9203573	A	1.8171756	A	0.537069872731356	0	lncRNA	17850-1_{1..2791}	lnc-DHRS2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHRS2-3:1	chr14	 24166066	 24168856	+	lnc-DHRS2-3	lnc-DHRS2-3:1	XLOC_010769	linc-DHRS4-2	NA	NA	NA	inter
CUST_36431_PI429285431	0.8998924	A	1.441848	A	0.6868392543723	0	lncRNA	37644-2_{3001..3983}	n344943|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_492|NULL|-1.3080000|-0.4555045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344943|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_492|NULL|-1.3080000|-0.4555045	chr7	  7936668	  7937650	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3409210	4.0240803	P	5.0197573	P	0.501500484590538	0	lncRNA	ENST00000502514	XR_133415	XR_133415	NA	Hs.710582	NA	NA	ENST00000502514	THC2696085	NA	"PREDICTED: Homo sapiens hypothetical LOC100128340 (LOC100128340), miscRNA [XR_133415]"	chr5:177378897-177378956	hs|5q35.3	Agilent_HUMAN_G3V2	ENST00000502514	ENST00000502514	chr5	177378897	177378956	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8620_PI429285431	0.91917133	A	0.9066764	A	1.00869843895942	0	lncRNA	10173-1_{1..3000}	lnc-STARD9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-STARD9-1:1	chr15	 43034200	 43037199	+	lnc-STARD9-1	lnc-STARD9-1:1	ENSG00000246283	AC090510.1	TTBK2	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr15:43036536-43044389"	NA	inter
CUST_4944_PI429285431	5.646231	P	5.3195453	P	1.25412895504069	0	lncRNA	4888-1_{1..397}	"transcript_id ""ENST00000557339.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557339.1"" | genecode_v17"	chr14	 88490958	 88491354	+	ENSG00000258867.1	ENST00000557339.1	RP11-300J18.3	RP11-300J18.3-002	GPR65	NA	chr14:88480958-88481155	inter
CUST_35455_PI429285431	3.4370606	P	2.4650242	A	1.96160749980331	0	lncRNA	36859-1_{1..1571}	n342529|BC047014|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5025|NULL|-0.8104620|-0.2258657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342529|BC047014|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5025|NULL|-0.8104620|-0.2258657	chr21	 37504064	 37505634	-	NA	NA	NA	NA	DOPEY2	"hg19_refFlat_CBR3:range=chr21:37507491-375188105'pad=0,hg19_refFlat_CBR3:range=chr21:37507491-375188105'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_RPS9:range=chr19:54705053-547114435'pad=0,hg19_refFlat_RPS9:range=chr19:54705053-547114435'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10chr21:37536839-37538605"	NA	inter
CUST_20915_PI429285431	0.92557544	A	0.9090118	A	1.0115472004629	0	lncRNA	22546-1_{1..476}	lnc-OVGP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OVGP1-2:1	chr1	111866456	111866931	-	lnc-OVGP1-2	lnc-OVGP1-2:1	ENSG00000229283.1	RP5-1125M8.2	CHIA	"hg19_refFlat_CHIA:range=chr1:111853090-1118630885'pad=0,hg19_refFlat_CHIA:range=chr1:111853090-1118630885'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_DPPA2:range=chr3:109019240-1090333895'pad=0,hg19_refFlat_DPPA2:range=chr3:109019240-1090333895'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CHIA:range=chr1:111857902-1118630885'pad=0,hg19_refFlat_CHIA:range=chr1:111857902-1118630885'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_CHIA:range=chr1:111860306-1118630885'pad=0,hg19_refFlat_CHIA:range=chr1:111860306-1118630885'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50chr1:111856456-111863185"	NA	inter
CUST_3739_PI429285431	6.034521	P	5.9888735	P	1.0321463158402	0	lncRNA	3708-1_{1..792}	"transcript_id ""ENST00000476909.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000476909.1"" | genecode_v17"	chr10	 80027167	 80027958	+	ENSG00000227136.2	ENST00000476909.1	LINC00595	LINC00595-003	NA	NA	NA	inter
LNCA_21_P0003847	5.443017	P	5.413121	P	1.02093852634568	0	lncRNA	TCONS_00008869	NA	NA	NA	NA	XLOC_003646	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003646), lincRNA [TCONS_00008869]"	chr4:111288192-111288251	hs|4q25	Agilent_HUMAN_G3V2	TCONS_00008869	TCONS_00008869	chr4	111288192	111288251	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19813_PI429285431	0.9134964	A	0.899006	A	1.0100945899716	0	lncRNA	21470-1_{1..384}	lnc-REG1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-REG1A-1:1	chr2	 80004112	 80004495	+	lnc-REG1A-1	lnc-REG1A-1:1	ENSG00000250810.1	AC096753.1	CTNNA2	NA	chr2:79994112-80014227	inner
LNCA_21_P0010513	0.9760845	A	0.90700686	A	1.04904578144815	0	lncRNA	AK055120	NA	AK055120	NA	NA	XLOC_l2_000038	NA	NA	THC2626013	NA	"BROAD Institute lincRNA (XLOC_l2_000038), lincRNA [TCONS_l2_00000069]"	chr1:4008510-4008568	hs|1p36.32	Agilent_HUMAN_G3V2	AK055120	AK055120	chr1	  4008510	  4008568	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7328_PI429285431	3.1890817	P	2.8768878	A	1.24159435213113	0	lncRNA	8679-1_{1..263}	"transcript_id ""ENST00000492744.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000492744.2"" | genecode_v17"	chr17	 76528875	 76529137	-	ENSG00000243426.2	ENST00000492744.2	RN7SL454P	RN7SL454P-201	DNAH17	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-21.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr17:76518875-76539137"	NA	inner
CUST_29455_PI429285431	2.625216	A	2.258384	A	1.28951807917451	0	lncRNA	31212-1_{1..273}	n332858|AF079567|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066428|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066428|-1.1064500|-0.1711531	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332858|AF079567|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066428|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066428|-1.1064500|-0.1711531	chr10	 15139620	 15139892	+	NA	NA	NA	NA	NMT2	NA	chr10:15147771-15154345	inner
CUST_7968_PI429285431	7.2746916	P	6.9993796	P	1.2102557931619	0	lncRNA	9580-1_{1..609}	lnc-TMEM60-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM60-1:4	chr7	 77325489	 77326097	-	lnc-TMEM60-1	lnc-TMEM60-1:4	ENSG00000214293	AC090421.1	RSBN1L	NA	chr7:77325743-77335579	inter
CUST_2336_PI429285431	0.8884372	A	1.4908401	A	0.658656007975937	0	lncRNA	2328-1_{1..693}	"transcript_id ""ENST00000594690.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594690.1"" | genecode_v17"	chr5	120658249	120658941	+	ENSG00000229855.3	ENST00000594690.1	CTC-546K23.1	CTC-546K23.1-005	NA	NA	NA	inter
CUST_5755_PI429285431	1.4965636	A	2.9145257	P	0.374240577973113	0	lncRNA	5680-1_{1..392}	"transcript_id ""ENST00000439868.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439868.1"" | genecode_v17"	chr17	 18983301	 18983692	+	ENSG00000230197.2	ENST00000439868.1	RP11-160E2.17	RP11-160E2.17-003	LOC100132472	NA	chr17:18986174-18993942	inter
CUST_47684_PI429285431	0.9043683	A	0.90180784	A	1.00177635147632	0	lncRNA	51662-2_{3001..6000}	"gi|385137064|ref|NR_047602.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 32, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137064|ref|NR_047602.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 32, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047602.1	NA	NA	NA	NA	NA	inter
CUST_16070_PI429285431	0.8985156	A	0.89347607	A	1.00349924412052	0	lncRNA	17773-1_{1..1257}	lnc-C7orf65-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C7orf65-2:1	chr7	 47629926	 47631182	+	lnc-C7orf65-2	lnc-C7orf65-2:1	XLOC_006088	linc-C7orf65-2	TNS3	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80chr7:47619926-47621742"	NA	inter
CUST_1160_PI429285431	0.9045865	A	0.89570665	A	1.00617402419179	0	lncRNA	1149-1_{1..1068}	"transcript_id ""ENST00000605739.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605739.1"" | genecode_v17"	chr2	174833079	174834146	+	ENSG00000271151.1	ENST00000605739.1	RP11-394I13.2	RP11-394I13.2-001	SP3	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90chr2:174823079-174830430"	NA	inter
CUST_34169_PI429285431	0.9303639	A	0.91466457	A	1.01094137005711	0	lncRNA	35686-1_{1..2638}	n341015|CR610091|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3481|NULL|-1.1405700|-0.4313004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341015|CR610091|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3481|NULL|-1.1405700|-0.4313004	chr11	 40128793	 40131430	-	NA	NA	NA	NA	LRRC4C	NA	chr11:40135753-40141431	inter
CUST_29288_PI429285431	1.8870238	A	1.9709073	A	0.943514438163606	0	lncRNA	31039-1_{1..417}	n332412|AB439565|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000487364|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000487364|-0.5870750|-0.0427728	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332412|AB439565|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000487364|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000487364|-0.5870750|-0.0427728	chr2	 85886446	 85886862	-	NA	NA	NA	NA	SFTPB	NA	chr2:85884440-85895864	inner
CUST_10502_PI429285431	1.3341877	A	2.4316409	A	0.467340768048561	0	lncRNA	12029-1_{1..259}	lnc-ITIH2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITIH2-4:1	chr10	  7186617	  7186875	+	lnc-ITIH2-4	lnc-ITIH2-4:1	XLOC_008377	linc-ITIH2-3	NA	NA	NA	inter
CUST_39256_PI429285431	8.792929	P	8.457942	P	1.26136604271993	0	lncRNA	40227-1_{1..465}	n386140|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bmy.1||1.8837000|-0.1987204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386140|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bmy.1||1.8837000|-0.1987204	chr15	 84909373	 84909837	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_35206_PI429285431	4.2992887	P	3.071055	A	2.34279983832389	0	lncRNA	36606-1_{1..800}	n342190|AL110177|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4680|NULL|-1.0980600|-0.3750696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342190|AL110177|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4680|NULL|-1.0980600|-0.3750696	chr3	 40503866	 40504665	+	NA	NA	NA	NA	RPL14	NA	chr3:40498801-40503859	inter
CUST_39250_PI429285431	9.035601	P	8.981551	P	1.03817525033196	0	lncRNA	40221-1_{1..2700}	n386117|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bls.1||3.1767000|-0.1375698	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386117|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bls.1||3.1767000|-0.1375698	chr15	 82619907	 82622606	+	NA	NA	NA	NA	GOLGA6L10	NA	chr15:82633122-82633844	inter
CUST_51138_PI429285431	0.8993684	A	0.9216562	A	0.984669993691628	0	lncRNA	54766-1_{1..2185}	hg19_lincRNAsTranscripts_TCONS_l2_00007730 range=chr14:53637183-53795114 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007730 range=chr14:53637183-53795114 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 53637183	 53639367	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3649_PI429285431	5.6668425	P	6.123151	P	0.728848818696604	0	lncRNA	3618-1_{1..1041}	"transcript_id ""ENST00000414157.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414157.1"" | genecode_v17"	chr10	 33271469	 33272509	+	ENSG00000229656.2	ENST00000414157.1	RP11-462L8.1	RP11-462L8.1-002	NA	NA	NA	inter
CUST_22289_PI429285431	1.281575	A	2.7704449	A	0.356291531905982	0	lncRNA	23889-1_{1..619}	lnc-ADAMTS12-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ADAMTS12-3:1	chr5	 33297838	 33298456	-	lnc-ADAMTS12-3	lnc-ADAMTS12-3:1	ENSG00000250697.1	CTD-2066L21.3	NA	NA	NA	inter
CUST_15856_PI429285431	0.9188366	A	0.90681267	A	1.00836918058761	0	lncRNA	17546-5_{12001..12335}	lnc-KLF7-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF7-1:7	chr2	208114812	208115146	-	lnc-KLF7-1	lnc-KLF7-1:7	XLOC_002473	linc-KLF7-2	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60"	NA	inter
CUST_8056_PI429285431	0.91570765	A	0.93229276	A	0.988569903394678	0	lncRNA	9664-1_{1..3000}	lnc-ZNF506-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF506-2:1	chr19	 20005974	 20008973	-	lnc-ZNF506-2	lnc-ZNF506-2:1	ENSG00000245381	AC011477.2	ZNF93	"hg19_refFlat_ZNF486:range=chr19:20278140-203089115'pad=0,hg19_refFlat_ZNF486:range=chr19:20278140-203089115'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF85:range=chr19:21106207-211331085'pad=0,hg19_refFlat_ZNF85:range=chr19:21106207-211331085'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF253:range=chr19:19976806-200035565'pad=0,hg19_refFlat_ZNF253:range=chr19:19976806-200035565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF506:range=chr19:19905361-199324125'pad=0,hg19_refFlat_ZNF506:range=chr19:19905361-199324125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF780A:range=chr19:40580423-405906605'pad=0,hg19_refFlat_ZNF780A:range=chr19:40580423-405906605'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF470:range=chr19:57081681-570899515'pad=0,hg19_refFlat_ZNF470:range=chr19:57081681-570899515'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.70;hg19_refFlat_ZNF100:range=chr19:21909485-219502315'pad=0,hg19_refFlat_ZNF100:range=chr19:21909485-219502315'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF85:range=chr19:21117817-211331085'pad=0,hg19_refFlat_ZNF85:range=chr19:21117817-211331085'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF626:range=chr19:20807096-208442525'pad=0,hg19_refFlat_ZNF626:range=chr19:20807096-208442525'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF681:range=chr19:23926414-239415515'pad=0,hg19_refFlat_ZNF681:range=chr19:23926414-239415515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZFP37:range=chr9:115805005-1158189685'pad=0,hg19_refFlat_ZFP37:range=chr9:115805005-1158189685'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_ZNF431:range=chr19:21324987-213668375'pad=0,hg19_refFlat_ZNF431:range=chr19:21324987-213668375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF502:range=chr3:44761754-447639445'pad=0,hg19_refFlat_ZNF502:range=chr3:44761754-447639445'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_ZNF93:range=chr19:20011898-200456275'pad=0,hg19_refFlat_ZNF93:range=chr19:20011898-200456275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF107:range=chr7:64152320-641690345'pad=0,hg19_refFlat_ZNF107:range=chr7:64152320-641690345'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF708:range=chr19:21476076-215120145'pad=0,hg19_refFlat_ZNF708:range=chr19:21476076-215120145'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80chr19:20011722-20018579"	NA	inter
CUST_42585_PI429285431	10.378804	P	10.211232	P	1.12316664712892	0	lncRNA	45429-1_{1..133}	ENST00000384458 ncrna:snoRNA chromosome:GRCh37:2:30410300:30410432:1 gene:ENSG00000207187 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384458 ncrna:snoRNA chromosome:GRCh37:2:30410300:30410432:1 gene:ENSG00000207187 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 30410300	 30410432	+	ENSG00000207187	ENST00000384458	NA	NA	NA	NA	NA	inter
CUST_18989_PI429285431	1.2090364	A	2.0530257	A	0.557100957230992	0	lncRNA	20681-1_{1..440}	lnc-CETN3-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CETN3-3:3	chr5	 89585713	 89586152	-	lnc-CETN3-3	lnc-CETN3-3:3	ENSG00000248555	RP11-61G23.1	NA	NA	NA	inter
CUST_14467_PI429285431	0.9238102	A	1.3637085	A	0.737186573357391	0	lncRNA	16130-1_{1..969}	lnc-RAD23B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAD23B-2:1	chr9	110116900	110117868	+	lnc-RAD23B-2	lnc-RAD23B-2:1	XLOC_007506	linc-ACTL7A-10	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.82;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20"	NA	inter
CUST_19567_PI429285431	0.9164848	A	0.9075353	A	1.0062226011332	0	lncRNA	21223-1_{1..3000}	lnc-GABPA-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GABPA-4:2	chr21	 27940276	 27943275	+	lnc-GABPA-4	lnc-GABPA-4:2	ENSG00000197934.4	AP001597.1	CYYR1	NA	chr21:27930276-27945581	inner
CUST_46092_PI429285431	0.9075612	A	0.9015812	A	1.00415362261744	0	lncRNA	50358-2_{3001..4675}	"gi|410170642|ref|XR_110372.3| PREDICTED: Homo sapiens uncharacterized LOC100129940 (LOC100129940), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170642|ref|XR_110372.3| PREDICTED: Homo sapiens uncharacterized LOC100129940 (LOC100129940), misc_RNA"	Chr12	 66256782	 66258456	-	100129940	XR_110372.4	NA	NA	NA	NA	NA	inter
CUST_40896_PI429285431	0.8946966	A	0.8912668	A	1.00238018435187	0	lncRNA	41583-2_{3001..3623}	n410718|NR_038120|lncRNA|Homosapiens||RefGeneNoncode|NR_038120||2.8910700|-0.2509502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410718|NR_038120|lncRNA|Homosapiens||RefGeneNoncode|NR_038120||2.8910700|-0.2509502	chr7	 36895510	 36896132	-	NA	NA	NA	NA	ELMO1	NA	chr7:36892511-37035871	inner
CUST_3444_PI429285431	5.731236	P	5.6837053	P	1.03349449203364	0	lncRNA	3415-1_{1..567}	"transcript_id ""ENST00000592744.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592744.1"" | genecode_v17"	chr9	 84561353	 84561919	-	ENSG00000267559.1	ENST00000592744.1	RP11-383M4.6	RP11-383M4.6-002	FAM75D1	"hg19_refFlat_SPATA31D3:range=chr9:84558501-845629225'pad=0,hg19_refFlat_SPATA31D3:range=chr9:84558501-845629225'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SPATA31D1:range=chr9:84603734-846101165'pad=0,hg19_refFlat_SPATA31D1:range=chr9:84603734-846101165'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_SPATA31D4:range=chr9:84543429-845478305'pad=0,hg19_refFlat_SPATA31D4:range=chr9:84543429-845478305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50chr9:84581478-84601721"	NA	inner
CUST_11188_PI429285431	1.0612428	A	0.9146599	A	1.10694450762129	0	lncRNA	12745-1_{1..523}	lnc-TLR4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TLR4-4:1	chr9	120630041	120630563	+	lnc-TLR4-4	lnc-TLR4-4:1	XLOC_007538	linc-CEP110-13	NA	NA	NA	inter
CUST_19526_PI429285431	0.9114451	A	1.0481627	A	0.909586281127756	0	lncRNA	21182-1_{1..321}	lnc-COG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-COG1-1:1	chr17	 71240632	 71240952	+	lnc-COG1-1	lnc-COG1-1:1	ENSG00000265010.1	RP11-661C3.2	CPSF4L	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00chr17:71244588-71250845"	NA	inner
CUST_29554_PI429285431	1.9755461	A	1.9882478	A	0.991234495474233	0	lncRNA	31314-1_{1..366}	n333035|AF181286|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072817|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072817|-1.0709800|-0.2908693	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333035|AF181286|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072817|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072817|-1.0709800|-0.2908693	chrX	 29931994	 29932359	-	NA	NA	NA	NA	IL1RAPL1	NA	chrX:29921994-29942360	inner
CUST_21155_PI429285431	1.4933041	A	0.91832685	A	1.48965397243748	0	lncRNA	22778-1_{1..799}	lnc-FASLG-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FASLG-2:1	chr1	173033013	173033811	+	lnc-FASLG-2	lnc-FASLG-2:1	ENSG00000224228.1	RP1-15D23.2	NA	NA	NA	inter
CUST_46785_PI429285431	0.9149099	A	0.91784954	A	0.997964471326249	0	lncRNA	50932-1_{1..3000}	"gi|299829221|ref|NR_033892.1| Homo sapiens TBC1 domain family, member 3 pseudogene 5 (TBC1D3P5), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299829221|ref|NR_033892.1| Homo sapiens TBC1 domain family, member 3 pseudogene 5 (TBC1D3P5), non-coding RNA"	Chr17	 25745031	 25748030	+	440419	NR_033892.1	NA	NA	NA	NA	NA	inter
CUST_13645_PI429285431	1.2697443	A	2.2456417	A	0.508423492863372	0	lncRNA	15283-1_{1..352}	lnc-SGCE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SGCE-1:1	chr7	 94021430	 94021781	-	lnc-SGCE-1	lnc-SGCE-1:1	XLOC_006525	linc-BET1-1	COL1A2	NA	chr7:94023873-94031491	inter
CUST_11648_PI429285431	8.613506	P	8.72909	P	0.923008603102907	0	lncRNA	13225-1_{1..270}	lnc-C16orf47-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C16orf47-1:2	chr16	 73093014	 73093283	-	lnc-C16orf47-1	lnc-C16orf47-1:2	XLOC_012005	linc-ZFHX3-1	ZFHX3	NA	chr16:73083014-73092534	inter
CUST_3884_PI429285431	0.9241057	A	1.6189256	A	0.617786435618259	0	lncRNA	3853-1_{1..568}	"transcript_id ""ENST00000533049.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533049.1"" | genecode_v17"	chr11	 25756317	 25756884	+	ENSG00000254456.1	ENST00000533049.1	RP11-405K6.1	RP11-405K6.1-001	NA	NA	NA	inter
CUST_34740_PI429285431	1.3075567	A	1.2889484	A	1.01298183242676	0	lncRNA	36184-1_{1..2448}	n341646|BC045653|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4117|NULL|-0.3486800|-0.2710618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341646|BC045653|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4117|NULL|-0.3486800|-0.2710618	chr9	  2715908	  2718355	-	NA	NA	NA	NA	KCNV2	"hg19_refFlat_KCNV2:range=chr9:2717740-27297275'pad=0,hg19_refFlat_KCNV2:range=chr9:2717740-27297275'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.40chr9:2717526-2728334"	NA	inner
CUST_28996_PI429285431	0.928712	A	0.9170944	A	1.00808521693392	0	lncRNA	30720-1_{1..1819}	n326480|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033258|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033258|-0.0148713|-0.3105762	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326480|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033258|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033258|-0.0148713|-0.3105762	chr1	113164318	113166136	-	NA	NA	NA	NA	ST7L	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-26.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-22.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20chr1:113154318-113162040"	NA	inner
CUST_44834_PI429285431	3.5256927	P	2.5677516	A	1.94253568278589	0	lncRNA	49363-1_{1..2027}	"gi|310119866|ref|XR_110191.1| PREDICTED: Homo sapiens uncharacterized LOC100505519 (LOC100505519), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|310119866|ref|XR_110191.1| PREDICTED: Homo sapiens uncharacterized LOC100505519 (LOC100505519), misc_RNA"	NA	NA	NA	NA	NA	XR_110191.1	NA	NA	NA	NA	NA	Unknown
CUST_39528_PI429285431	0.9219439	A	0.9136485	A	1.00576649571646	0	lncRNA	40474-1_{1..628}	n387362|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011csc.1||1.2255200|-0.3347044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n387362|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011csc.1||1.2255200|-0.3347044	chr5	 70671611	 70672238	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33483_PI429285431	0.9202875	A	0.9185719	A	1.001189870638	0	lncRNA	35055-2_{3001..3425}	n340222|BC042524|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2683|NULL|-1.2545000|-0.4649616	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340222|BC042524|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2683|NULL|-1.2545000|-0.4649616	chr4	131732665	131733089	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008938	7.772431	P	8.172309	P	0.757922373459562	0	lncRNA	TCONS_00024398	NA	NA	NA	NA	XLOC_011721	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011721), lincRNA [TCONS_00024398]"	chr16:51558947-51559006	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00024398	TCONS_00024398	chr16	 51558947	 51559006	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26459_PI429285431	0.92617136	A	1.0702512	A	0.904956380422899	0	lncRNA	27967-1_{1..515}	lnc-PDZD9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDZD9-1:1	chr16	 22103529	 22104043	-	lnc-PDZD9-1	lnc-PDZD9-1:1	ENSG00000260277.1	RP11-101E7.2	C16orf52	NA	chr16:22093529-22095975	inter
CUST_6611_PI429285431	4.2529335	P	2.3599749	A	3.71396083078851	0	lncRNA	6559-1_{1..3000}	"transcript_id ""ENST00000593427.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593427.1"" | genecode_v17"	chr19	 57815673	 57818672	+	ENSG00000268205.1	ENST00000593427.1	CTC-444N24.11	CTC-444N24.11-001	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-27.26;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00"	NA	inter
CUST_19897_PI429285431	1.4644872	A	2.271775	A	0.571455158027033	0	lncRNA	21552-1_{1..636}	lnc-CROCC-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CROCC-2:1	chr1	 17331138	 17331773	+	lnc-CROCC-2	lnc-CROCC-2:1	ENSG00000226526.1	RP1-37C10.3	ATP13A2	"hg19_refFlat_ATP13A2:range=chr1:17312716-173382335'pad=0,hg19_refFlat_ATP13A2:range=chr1:17312716-173382335'pad=0 3'pad=0 strand=- repeatMasking=none,-100.90;hg19_refFlat_ATP13A2:range=chr1:17312480-173382335'pad=0,hg19_refFlat_ATP13A2:range=chr1:17312480-173382335'pad=0 3'pad=0 strand=- repeatMasking=none,-100.90chr1:17321138-17338423"	NA	inner
CUST_8952_PI429285431	0.92722744	A	1.1311986	A	0.868157582214254	0	lncRNA	10486-1_{1..643}	lnc-PRKD1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PRKD1-3:1	chr14	 29850387	 29851029	-	lnc-PRKD1-3	lnc-PRKD1-3:1	ENSG00000257522	RP11-562L8.1	NA	NA	NA	inter
CUST_10777_PI429285431	2.2652378	A	0.94437355	A	2.49815717682284	0	lncRNA	12312-2_{3001..3284}	lnc-COL4A2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL4A2-2:1	chr13	110710120	110710403	+	lnc-COL4A2-2	lnc-COL4A2-2:1	XLOC_010496	linc-COL4A2-2	NA	NA	NA	inter
CUST_977_PI429285431	0.915318	A	0.91497123	A	1.00024039153722	0	lncRNA	966-1_{1..708}	"transcript_id ""ENST00000447987.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447987.1"" | genecode_v17"	chr2	103489798	103490505	-	ENSG00000236757.1	ENST00000447987.1	AC007251.2	AC007251.2-001	NA	NA	NA	inter
CUST_1162_PI429285431	5.9118195	P	6.2765284	P	0.77662556292764	0	lncRNA	1151-1_{1..393}	"transcript_id ""ENST00000417038.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417038.1"" | genecode_v17"	chr2	175352131	175352523	+	ENSG00000226853.1	ENST00000417038.1	AC010894.3	AC010894.3-001	GPR155	NA	chr2:175342131-175351811	inter
CUST_52008_PI429285431	3.2758472	P	3.8439844	P	0.674487120534071	0	lncRNA	55540-2_{3001..5178}	hg19_lincRNAsTranscripts_TCONS_l2_00017135 range=chr21:15215457-15221989 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017135 range=chr21:15215457-15221989 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 15218457	 15220634	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46783_PI429285431	6.284607	P	6.693763	P	0.753063799402526	0	lncRNA	50930-1_{1..2051}	"gi|261337148|ref|NR_029393.1| Homo sapiens keratin 16 pseudogene 3 (KRT16P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|261337148|ref|NR_029393.1| Homo sapiens keratin 16 pseudogene 3 (KRT16P3), non-coding RNA"	Chr17	 20404826	 20406876	-	644945	NR_029393.1	NA	NA	NA	NA	NA	inter
CUST_11782_PI429285431	0.95998734	A	0.92165375	A	1.02692697147926	0	lncRNA	13362-1_{1..304}	lnc-ADAM20-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAM20-1:2	chr14	 70922069	 70922372	-	lnc-ADAM20-1	lnc-ADAM20-1:2	XLOC_011061	linc-SYNJ2BP	ADAM21	NA	chr14:70918874-70926622	inner
CUST_42227_PI429285431	1.7797494	A	1.0708234	A	1.63458681214249	0	lncRNA	44335-1_{1..89}	ENST00000385227 ncrna:miRNA chromosome:GRCh37:1:41222956:41223044:1 gene:ENSG00000207962 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385227 ncrna:miRNA chromosome:GRCh37:1:41222956:41223044:1 gene:ENSG00000207962 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 41222956	 41223044	+	ENSG00000207962	ENST00000385227	NA	NA	NFYC	NA	chr1:41212956-41233044	inner
CUST_22358_PI429285431	2.7033968	A	3.0402699	A	0.791755505921406	0	lncRNA	23952-1_{1..847}	lnc-CSAG1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CSAG1-1:2	chrX	151928359	151929205	+	lnc-CSAG1-1	lnc-CSAG1-1:2	ENSG00000184324.11	CSAG2	MAGEA3	NA	chrX:151934652-151938240	inner
CUST_1207_PI429285431	1.1850629	A	1.4006658	A	0.861186196139401	0	lncRNA	1198-1_{1..560}	"transcript_id ""ENST00000427045.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427045.1"" | genecode_v17"	chr2	200472791	200473350	+	ENSG00000238217.1	ENST00000427045.1	AC093590.1	AC093590.1-003	NA	NA	NA	inter
CUST_28388_PI429285431	0.9134032	A	0.9130279	A	1.00026017197572	0	lncRNA	30041-1_{1..1878}	n325704|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045202|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045202|1.9506500|-0.3530284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325704|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045202|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045202|1.9506500|-0.3530284	chr13	 63458504	 63460381	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8168_PI429285431	1.1432714	A	1.2242844	A	0.945393597852573	0	lncRNA	9770-1_{1..2523}	lnc-CREG1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CREG1-3:1	chr1	167599652	167602174	-	lnc-CREG1-3	lnc-CREG1-3:1	ENSG00000245529	ENST00000500288	RCSD1	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chr1:167599474-167609911"	NA	inner
CUST_37991_PI429285431	5.5985203	P	4.8115306	P	1.72547037019064	0	lncRNA	39078-1_{1..926}	n346546|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2096|NULL|-1.3188300|-0.0334792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346546|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2096|NULL|-1.3188300|-0.0334792	chr8	145168557	145169482	+	NA	NA	NA	NA	MAF1	NA	chr8:145159305-145162515	inter
CUST_34532_PI429285431	0.9163727	A	0.9092195	A	1.00497053272746	0	lncRNA	35994-1_{1..2384}	n341412|BC034289|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3882|NULL|-0.7671000|-0.2193331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n341412|BC034289|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3882|NULL|-0.7671000|-0.2193331	chr13	101187994	101190377	-	NA	NA	NA	NA	PCCA	NA	chr13:101177994-101182691	inner
CUST_45689_PI429285431	6.2300634	P	6.2469883	P	0.988337098398475	0	lncRNA	50061-1_{1..661}	"gi|324072947|ref|NR_037911.1| Homo sapiens family with sequence similarity 24, member B (FAM24B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|324072947|ref|NR_037911.1| Homo sapiens family with sequence similarity 24, member B (FAM24B), transcript variant 3, non-coding RNA"	Chr10	124608610	124609270	-	196792	NR_037911.1	NA	NA	NA	NA	NA	inter
CUST_32441_PI429285431	0.95072854	A	0.9200591	A	1.02148600614835	0	lncRNA	34114-1_{1..3000}	n339039|BC043155|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1468|NULL|-0.9148540|-0.3724173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339039|BC043155|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1468|NULL|-0.9148540|-0.3724173	chr2	179588183	179591182	+	NA	NA	NA	NA	TTN	"hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10chr2:179578183-179601767"	NA	inner
LNCA_21_P0004156	4.9772778	P	4.6476717	P	1.25667021816066	0	lncRNA	ENST00000507491	NA	NA	NA	NA	XLOC_004928	NA	ENST00000507491	NA	NA	"BROAD Institute lincRNA (XLOC_004928), lincRNA [TCONS_00009729]"	chr5:92242949-92242890	hs|5q14.3	Agilent_HUMAN_G3V2	ENST00000507491	ENST00000507491	chr5	 92242890	 92242949	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3540_PI429285431	7.8120775	P	7.8617473	P	0.96615743502835	0	lncRNA	3510-1_{1..339}	"transcript_id ""ENST00000425153.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425153.1"" | genecode_v17"	chr9	129289897	129290235	+	ENSG00000226078.1	ENST00000425153.1	RP11-205K6.2	RP11-205K6.2-001	NA	NA	NA	inter
CUST_21386_PI429285431	3.1247156	A	4.2227893	P	0.467139809019557	0	lncRNA	23008-1_{1..850}	lnc-RPS25-1:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS25-1:15	chr11	118899932	118900781	-	lnc-RPS25-1	lnc-RPS25-1:15	ENSG00000137700.10	SLC37A4	SLC37A4	NA	chr11:118895061-118901616	inner
CUST_2015_PI429285431	0.9131863	A	0.91964585	A	0.995532589826403	0	lncRNA	2006-1_{1..483}	"transcript_id ""ENST00000507817.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000507817.1"" | genecode_v17"	chr4	188454032	188454514	-	ENSG00000250590.1	ENST00000507817.1	RP11-565A3.2	RP11-565A3.2-001	NA	NA	NA	inter
LNCA_21_P0004790	0.9210481	A	0.91902685	A	1.00140200563096	0	lncRNA	ENST00000456346	NA	NA	NA	NA	XLOC_005876	NA	ENST00000456346	NA	NA	"BROAD Institute lincRNA (XLOC_005876), lincRNA [TCONS_00011594]"	chr6:150361742-150361683	hs|6q25.1	Agilent_HUMAN_G3V2	ENST00000456346	ENST00000456346	chr6	150361683	150361742	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2508_PI429285431	0.9073659	A	1.0767493	A	0.889222648877952	0	lncRNA	2500-1_{1..799}	"transcript_id ""ENST00000585372.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585372.1"" | genecode_v17"	chr6	 32685806	 32686604	+	ENSG00000232080.3	ENST00000585372.1	XXbac-BPG254F23.7	XXbac-BPG254F23.7-004	NA	NA	NA	inter
CUST_35508_PI429285431	5.2866297	P	1.747623	A	11.6237743782547	0	lncRNA	36915-3_{6001..7546}	n342611|D21211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5112|NULL|16.5493000|-0.1473824	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342611|D21211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5112|NULL|16.5493000|-0.1473824	chr4	 87521884	 87523429	+	NA	NA	NA	NA	PTPN13	NA	chr4:87515468-87736329	inner
CUST_47529_PI429285431	0.9183565	A	0.9164935	A	1.0012921673271	0	lncRNA	51540-1_{1..719}	"gi|257196271|ref|NR_028411.1| Homo sapiens long intergenic non-protein coding RNA 207 (LINC00207), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">gi|257196271|ref|NR_028411.1| Homo sapiens long intergenic non-protein coding RNA 207 (LINC00207), transcript variant 3, non-coding RNA"	Chr22	 44965220	 44965938	+	388910	NR_028411.1	NA	NA	NA	NA	NA	inter
CUST_45407_PI429285431	0.9162126	A	0.9229372	A	0.995349708712658	0	lncRNA	49834-1_{1..3000}	"gi|223941893|ref|NR_026918.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 3 (PTPN3), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223941893|ref|NR_026918.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 3 (PTPN3), transcript variant 7, non-coding RNA"	Chr9	112137974	112140973	-	5774	NR_026918.1	NA	NA	NA	NA	NA	inter
CUST_27499_PI429285431	3.191911	P	3.926897	P	0.600823855166193	0	lncRNA	29073-1_{1..3000}	n324680|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158310|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158310|2.7445500|-0.1420526	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324680|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158310|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158310|2.7445500|-0.1420526	chr22	 29697352	 29700351	+	NA	NA	NA	NA	GAS2L1	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-55.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-56.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr22:29702997-29708774"	NA	inner
CUST_6754_PI429285431	6.8926	P	7.0243635	P	0.912715097034952	0	lncRNA	6702-1_{1..225}	"transcript_id ""ENST00000604142.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604142.1"" | genecode_v17"	chr21	 11169720	 11169944	+	ENSG00000271308.1	ENST00000604142.1	AP003900.6	AP003900.6-002	NA	NA	NA	inter
LNCA_21_P0010914	1.6164299	A	1.7603717	A	0.905042972635191	0	lncRNA	ENST00000420049	NA	NA	NA	NA	XLOC_l2_001462	NA	ENST00000420049	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001462), lincRNA [TCONS_l2_00003892]"	chr10:7139578-7139637	hs|10p14	Agilent_HUMAN_G3V2	ENST00000420049	ENST00000420049	chr10	  7139578	  7139637	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46950_PI429285431	1.5041926	A	2.7517486	A	0.421161072275961	0	lncRNA	51056-1_{1..967}	"gi|310123725|ref|XR_109437.1| PREDICTED: Homo sapiens uncharacterized LOC100507440 (LOC100507440), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123725|ref|XR_109437.1| PREDICTED: Homo sapiens uncharacterized LOC100507440 (LOC100507440), misc_RNA"	NA	NA	NA	NA	NA	XR_109437.1	NA	NA	NA	NA	NA	Unknown
CUST_3117_PI429285431	0.904248	A	0.90646195	A	0.998466583685654	0	lncRNA	3096-1_{1..584}	"transcript_id ""ENST00000521215.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521215.1"" | genecode_v17"	chr8	 57552460	 57553043	-	ENSG00000254055.1	ENST00000521215.1	RP11-17A4.4	RP11-17A4.4-001	NA	NA	NA	inter
CUST_40759_PI429285431	2.434387	A	2.6132016	A	0.883428573139983	0	lncRNA	41483-2_{3001..4899}	n410477|NR_037625_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_2||0.6051280|-0.3281971	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410477|NR_037625_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_2||0.6051280|-0.3281971	chr6	  4173808	  4175706	+	NA	NA	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10"	NA	inter
CUST_45473_PI429285431	5.670587	P	6.1679025	P	0.708423757583917	0	lncRNA	49888-1_{1..441}	"gi|341916031|ref|XR_132727.1| PREDICTED: Homo sapiens uncharacterized LOC651337 (LOC651337), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341916031|ref|XR_132727.1| PREDICTED: Homo sapiens uncharacterized LOC651337 (LOC651337), misc_RNA"	NA	NA	NA	NA	NA	XR_132727.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003470	0.96574277	A	0.926249	A	1.0277531331308	0	lncRNA	XR_110053	XR_110053	XR_110053	NA	Hs.112674	LOC100507160	uncharacterized LOC100507160	ENST00000514707	THC2631145	NA	"PREDICTED: Homo sapiens hypothetical LOC100507160 (LOC100507160), miscRNA [XR_110053]"	chr4:59853280-59853221	hs|4q13.1	Agilent_HUMAN_G3V2	XR_110053	XR_110053	chr4	 59853221	 59853280	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5863_PI429285431	9.271171	P	9.104572	P	1.12240940275232	0	lncRNA	5792-1_{1..549}	"transcript_id ""ENST00000593169.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593169.1"" | genecode_v17"	chr17	 41757641	 41758189	+	ENSG00000267440.1	ENST00000593169.1	CTC-501O10.1	CTC-501O10.1-001	NA	NA	NA	inter
CUST_18876_PI429285431	4.866576	P	5.126659	P	0.835039877186887	0	lncRNA	20569-1_{1..569}	lnc-MYO6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-MYO6-2:1	chr6	 77303246	 77303814	+	lnc-MYO6-2	lnc-MYO6-2:1	ENSG00000236635	RP11-35J1.1	NA	NA	NA	inter
CUST_20776_PI429285431	0.9731685	A	0.92344075	A	1.03506957813403	0	lncRNA	22409-1_{1..232}	lnc-C2orf84-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf84-1:3	chr2	 24444189	 24444420	+	lnc-C2orf84-1	lnc-C2orf84-1:3	ENSG00000242628.1	AC009228.1	ITSN2	NA	chr2:24434189-24454375	inner
CUST_32006_PI429285431	0.919696	A	1.1218857	A	0.869230257471288	0	lncRNA	33728-1_{1..3000}	n338570|AK127758|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|976|NULL|-1.2193400|-0.3121581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338570|AK127758|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|976|NULL|-1.2193400|-0.3121581	chr1	234805268	234808267	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43192_PI429285431	0.9071852	A	0.9047446	A	1.00169312673211	0	lncRNA	48006-1_{1..570}	ENST00000590241 havana:sense_intronic chromosome:GRCh37:17:74546033:74546908:1 gene:ENSG00000267543 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000590241 havana:sense_intronic chromosome:GRCh37:17:74546033:74546908:1 gene:ENSG00000267543 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr17	 74546033	 74546602	+	ENSG00000267543	ENST00000590241	NA	NA	PRCD	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90chr17:74536033-74541458"	NA	inter
CUST_19823_PI429285431	1.8692926	A	2.469064	A	0.659858503956666	0	lncRNA	21480-1_{1..579}	lnc-PLA2G10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLA2G10-1:1	chr16	 14839937	 14840515	-	lnc-PLA2G10-1	lnc-PLA2G10-1:1	ENSG00000261695.1	RP11-719K4.6	LOC642799	NA	chr16:14844670-14850034	inter
CUST_18811_PI429285431	3.7944536	P	3.5257857	P	1.20469496930533	0	lncRNA	20506-1_{1..3000}	lnc-PADI1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PADI1-1:2	chr1	 17520556	 17523555	+	lnc-PADI1-1	lnc-PADI1-1:2	ENSG00000204362	RP11-380J14.1	PADI1	NA	chr1:17531621-17534112	inter
CUST_23493_PI429285431	6.731616	P	6.7592907	P	0.981000175735307	0	lncRNA	25060-1_{1..1945}	lnc-LGALS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LGALS2-1:1	chr22	 38054262	 38056206	-	lnc-LGALS2-1	lnc-LGALS2-1:1	ENSG00000233360.2	Z83844.1	PDXP	"hg19_refFlat_SH3BP1:range=chr22:38035795-380516915'pad=0,hg19_refFlat_SH3BP1:range=chr22:38035795-380516915'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.30chr22:38054737-38062939"	NA	inter
CUST_41433_PI429285431	9.585842	P	9.751575	P	0.891475466260438	0	lncRNA	42599-1_{1..64}	ENST00000579556 ncrna:miRNA chromosome:GRCh37:20:61870131:61870194:1 gene:ENSG00000266463 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579556 ncrna:miRNA chromosome:GRCh37:20:61870131:61870194:1 gene:ENSG00000266463 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 61870131	 61870194	+	ENSG00000266463	ENST00000579556	NA	NA	NKAIN4	NA	chr20:61872136-61880194	inter
CUST_36524_PI429285431	4.500525	P	4.568949	P	0.953679228368056	0	lncRNA	37723-1_{1..705}	n345024|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_573|NULL|-1.3688500|-0.2365261	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345024|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_573|NULL|-1.3688500|-0.2365261	chr8	124626464	124627168	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7302_PI429285431	0.9181867	A	0.9070272	A	1.00776516972083	0	lncRNA	8369-1_{1..272}	"transcript_id ""ENST00000517045.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517045.1"" | genecode_v17"	chr13	 46824077	 46824348	+	ENSG00000252854.1	ENST00000517045.1	RN7SKP5	RN7SKP5-201	LRRC63	NA	chr13:46814077-46834348	inter
CUST_13666_PI429285431	0.9270596	A	0.9301895	A	0.997832870263343	0	lncRNA	15304-1_{1..3000}	lnc-TPM4-2:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPM4-2:14	chr19	 16135241	 16138240	+	lnc-TPM4-2	lnc-TPM4-2:14	XLOC_012983	linc-TPM4-2	NA	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10"	NA	inter
CUST_24279_PI429285431	0.95804673	A	0.91772556	A	1.0283427288601	0	lncRNA	25830-1_{1..687}	lnc-OR4N4-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR4N4-1:14	chr15	 22370998	 22371684	+	lnc-OR4N4-1	lnc-OR4N4-1:14	ENSG00000259176.1	RP11-69H14.6	OR4M2	NA	chr15:22360998-22369561	inter
CUST_26097_PI429285431	4.677824	P	4.7657876	P	0.940849845380329	0	lncRNA	27610-1_{1..460}	lnc-UMPS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UMPS-1:1	chr3	124506319	124506778	+	lnc-UMPS-1	lnc-UMPS-1:1	ENSG00000244286.1	ITGB5-AS1	ITGB5	NA	chr3:124496319-124516604	inner
CUST_5209_PI429285431	0.9023107	A	1.0139588	A	0.925530154427658	0	lncRNA	5149-1_{1..423}	"transcript_id ""ENST00000559904.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559904.1"" | genecode_v17"	chr15	 67212149	 67212571	+	ENSG00000259437.1	ENST00000559904.1	RP11-798K3.4	RP11-798K3.4-001	NA	NA	NA	inter
CUST_21086_PI429285431	1.3918377	A	2.0573344	A	0.630471604369727	0	lncRNA	22711-1_{1..112}	lnc-SESN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SESN1-1:1	chr6	109245264	109245375	-	lnc-SESN1-1	lnc-SESN1-1:1	ENSG00000230290.1	ARMC2-AS1	ARMC2	NA	chr6:109235264-109255306	inner
CUST_28233_PI429285431	0.9056113	A	0.9091462	A	0.997552793335945	0	lncRNA	29868-1_{1..637}	n325524|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000134074|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000134074|-1.1965500|-0.5511444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325524|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000134074|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000134074|-1.1965500|-0.5511444	chr18	 59965422	 59966058	+	NA	NA	NA	NA	KIAA1468	NA	chr18:59955422-59974355	inner
CUST_15014_PI429285431	1.7526851	A	0.90953153	A	1.79396727089973	0	lncRNA	16676-1_{1..857}	lnc-GLIPR1L1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLIPR1L1-3:1	chr12	 75382082	 75382938	+	lnc-GLIPR1L1-3	lnc-GLIPR1L1-3:1	XLOC_009805	linc-GLIPR1L1-3	NA	NA	NA	inter
LNCA_21_P0012512	0.93853146	A	1.9752175	A	0.487445882115349	0	lncRNA	ENST00000496247	NA	NA	NA	NA	XLOC_l2_009986	NA	ENST00000496247	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009986), lincRNA [TCONS_l2_00019973]"	chr3:168006724-168006783	hs|3q26.2	Agilent_HUMAN_G3V2	ENST00000496247	ENST00000496247	chr3	168006724	168006783	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36729_PI429285431	0.92078334	A	0.9232757	A	0.998273919087143	0	lncRNA	37905-1_{1..1943}	n345212|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_761|NULL|-1.4462100|-0.3907986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345212|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_761|NULL|-1.4462100|-0.3907986	chr13	 31181980	 31183922	+	NA	NA	NA	NA	USPL1	NA	chr13:31191830-31201062	inter
CUST_15280_PI429285431	2.1196654	A	1.8725928	A	1.18679651870424	0	lncRNA	16955-1_{1..569}	lnc-NAV1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAV1-1:3	chr1	201552807	201553375	+	lnc-NAV1-1	lnc-NAV1-1:3	XLOC_000523	linc-NAV1-1	NA	NA	NA	inter
CUST_40179_PI429285431	7.5596495	P	7.656808	P	0.934872483439432	0	lncRNA	41013-1_{1..991}	n407947|NR_027650|lncRNA|Homosapiens||RefGeneNoncode|NR_027650||1.1151000|-0.3502216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407947|NR_027650|lncRNA|Homosapiens||RefGeneNoncode|NR_027650||1.1151000|-0.3502216	chr15	 83673144	 83674134	-	NA	NA	NA	NA	C15orf40	NA	chr15:83663144-83680393	inner
CUST_23174_PI429285431	4.178693	P	4.667072	P	0.712825572822233	0	lncRNA	24746-1_{1..560}	lnc-SNX33-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNX33-2:1	chr15	 75917878	 75918437	+	lnc-SNX33-2	lnc-SNX33-2:1	ENSG00000260235.1	CTD-2026K11.3	SNUPN	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40chr15:75907878-75918719"	NA	inner
LNCA_21_P0010040	3.6187782	P	4.09303	P	0.719840011404998	0	lncRNA	TCONS_00028390	NA	NA	NA	NA	XLOC_013744	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013744), lincRNA [TCONS_00028390]"	chr20:39764520-39764461	hs|20q12	Agilent_HUMAN_G3V2	TCONS_00028390	TCONS_00028390	chr20	 39764461	 39764520	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41492_PI429285431	2.0233908	A	2.1244273	A	0.932362897476387	0	lncRNA	42701-1_{1..76}	ENST00000583925 ncrna:miRNA chromosome:GRCh37:2:97464015:97464090:1 gene:ENSG00000264157 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583925 ncrna:miRNA chromosome:GRCh37:2:97464015:97464090:1 gene:ENSG00000264157 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 97464015	 97464090	+	ENSG00000264157	ENST00000583925	NA	NA	CNNM4	NA	chr2:97454015-97474090	inner
CUST_38941_PI429285431	0.9134394	A	0.9017237	A	1.00815376677939	0	lncRNA	39929-1_{1..1719}	n385093|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003sxz.2||0.1491470|-0.2320867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385093|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003sxz.2||0.1491470|-0.2320867	chr7	 26443015	 26444733	+	NA	NA	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40"	NA	inter
LNCA_21_P0013174	0.92829037	A	0.91113114	A	1.01196488525139	0	lncRNA	ENST00000401542	NA	NA	NA	NA	LRRC72	leucine rich repeat containing 72	ENST00000401542	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013291), lincRNA [TCONS_l2_00025686]"	chr7:16621116-16621175	hs|7p21.1	Agilent_HUMAN_G3V2	ENST00000401542	ENST00000401542	chr7	 16621116	 16621175	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5747_PI429285431	1.376135	A	0.89179945	A	1.39894141844306	0	lncRNA	5672-1_{1..771}	"transcript_id ""ENST00000577569.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577569.1"" | genecode_v17"	chr17	 16557218	 16557988	+	ENSG00000264765.1	ENST00000577569.1	RP11-92B11.4	RP11-92B11.4-001	ZNF624	NA	chr17:16547218-16557167	inter
CUST_12379_PI429285431	6.8514943	P	7.070209	P	0.859330674989005	0	lncRNA	13992-1_{1..406}	lnc-TSSC4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSSC4-2:2	chr11	  2398272	  2398677	+	lnc-TSSC4-2	lnc-TSSC4-2:2	XLOC_009027	linc-CD81-1	CD81	NA	chr11:2398547-2408419	inter
CUST_6141_PI429285431	0.9128734	A	0.9068752	A	1.00416629037513	0	lncRNA	6067-1_{1..572}	"transcript_id ""ENST00000583089.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583089.1"" | genecode_v17"	chr18	 28293241	 28293812	+	ENSG00000266196.1	ENST00000583089.1	RP11-675P14.1	RP11-675P14.1-001	NA	NA	NA	inter
CUST_20643_PI429285431	13.08231	P	12.6970415	P	1.30610284329427	0	lncRNA	22282-1_{1..545}	lnc-TEFM-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TEFM-2:1	chr17	 29283760	 29284304	-	lnc-TEFM-2	lnc-TEFM-2:1	ENSG00000230113.1	AC091177.1	ADAP2	"hg19_refFlat_ADAP2:range=chr17:29249033-292848875'pad=0,hg19_refFlat_ADAP2:range=chr17:29249033-292848875'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.70chr17:29273760-29286211"	NA	inner
CUST_14500_PI429285431	0.9088388	A	0.9099705	A	0.999215872924199	0	lncRNA	16166-1_{1..332}	lnc-NANOS1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NANOS1-2:1	chr10	120059728	120060059	+	lnc-NANOS1-2	lnc-NANOS1-2:1	XLOC_008637	linc-NANOS1-2	FAM204A	NA	chr10:120068572-120070036	inter
CUST_7636_PI429285431	0.9071368	A	0.93552095	A	0.980517884287635	0	lncRNA	9268-1_{1..2691}	lnc-ATP6AP2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ATP6AP2-4:1	chrX	 39869271	 39871961	+	lnc-ATP6AP2-4	lnc-ATP6AP2-4:1	ENSG00000223486	XLOC_007959	NA	NA	NA	inter
CUST_6329_PI429285431	1.615522	A	1.4471548	A	1.12378589671632	0	lncRNA	6253-1_{1..600}	"transcript_id ""ENST00000585880.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585880.1"" | genecode_v17"	chr19	  9841529	  9842128	+	ENSG00000267612.1	ENST00000585880.1	CTD-3116E22.7	CTD-3116E22.7-001	ZNF846	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20chr19:9834684-9852619"	NA	inter
CUST_24911_PI429285431	2.4826374	A	3.0462635	P	0.676599445547185	0	lncRNA	26452-1_{1..429}	lnc-SLC2A6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC2A6-1:1	chr9	136335764	136336192	-	lnc-SLC2A6-1	lnc-SLC2A6-1:1	ENSG00000227898.1	RP13-100B2.4	C9orf7	NA	chr9:136325764-136335909	inner
CUST_22047_PI429285431	0.9155835	A	0.9168476	A	0.999124176406623	0	lncRNA	23655-1_{1..183}	lnc-API5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-API5-1:1	chr11	 43416914	 43417096	+	lnc-API5-1	lnc-API5-1:1	ENSG00000254577.1	RP11-484D2.4	TTC17	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60chr11:43406914-43427045"	NA	inner
CUST_12837_PI429285431	3.4463859	A	3.9955308	P	0.683425081340751	0	lncRNA	14464-1_{1..787}	lnc-U2SURP-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-U2SURP-3:7	chr3	142660241	142661027	+	lnc-U2SURP-3	lnc-U2SURP-3:7	XLOC_002845	linc-SR140-2	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70"	NA	inter
CUST_20956_PI429285431	2.8940983	A	3.1145334	P	0.8583065421562	0	lncRNA	22587-1_{1..1021}	lnc-PSMB11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PSMB11-1:1	chr14	 23463019	 23464039	+	lnc-PSMB11-1	lnc-PSMB11-1:1	ENSG00000258457.1	RP11-298I3.4	C14orf93	"hg19_refFlat_C14orf93:range=chr14:23456424-234682325'pad=0,hg19_refFlat_C14orf93:range=chr14:23456424-234682325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60chr14:23456110-23473360"	NA	inner
CUST_45236_PI429285431	5.1371	P	4.707081	P	1.34725131977448	0	lncRNA	49692-1_{1..2173}	"gi|310120237|ref|XR_108864.1| PREDICTED: Homo sapiens uncharacterized LOC100506365, transcript variant 1 (LOC100506365), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310120237|ref|XR_108864.1| PREDICTED: Homo sapiens uncharacterized LOC100506365, transcript variant 1 (LOC100506365), misc_RNA"	NA	NA	NA	NA	NA	XR_108864.1	NA	NA	NA	NA	NA	Unknown
CUST_26799_PI429285431	0.9167946	A	0.8979862	A	1.01312234148552	0	lncRNA	28309-1_{1..487}	n323865|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056979|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056979|-1.0295400|-0.3313573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323865|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056979|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056979|-1.0295400|-0.3313573	chrX	 64725002	 64725488	+	NA	NA	NA	NA	LAS1L	NA	chrX:64732462-64747355	inner
CUST_23291_PI429285431	0.90449417	A	0.89472127	A	1.00679705390803	0	lncRNA	24862-1_{1..690}	lnc-XXYLT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-XXYLT1-1:1	chr3	195002868	195003557	-	lnc-XXYLT1-1	lnc-XXYLT1-1:1	ENSG00000229325.1	ACAP2-IT1	ACAP2	NA	chr3:194995465-195013470	inner
CUST_29612_PI429285431	13.598854	P	13.505596	P	1.06677653752707	0	lncRNA	31373-1_{1..248}	n333153|AF369659|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078525|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078525|-1.4032800|-0.0693911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333153|AF369659|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078525|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078525|-1.4032800|-0.0693911	chr22	 29999563	 29999810	+	NA	NA	NA	NA	NF2	NA	chr22:29999545-30009811	inner
CUST_7955_PI429285431	0.9020592	A	0.8955982	A	1.00448846706093	0	lncRNA	9567-1_{1..1760}	lnc-RD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RD3-1:1	chr1	211547334	211549093	-	lnc-RD3-1	lnc-RD3-1:1	ENSG00000251496	ENST00000510684	TRAF5	NA	chr1:211537334-211548288	inner
CUST_50231_PI429285431	0.92650115	A	0.9195102	A	1.00485751695091	0	lncRNA	53955-1_{1..786}	hg19_lincRNAsTranscripts_TCONS_l2_00029755 range=chr9:67289570-67298632 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029755 range=chr9:67289570-67298632 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 67289570	 67290355	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40515_PI429285431	15.748719	P	15.964782	P	0.860911592996114	0	lncRNA	41280-1_{1..2652}	n409540|NR_033926|lncRNA|Homosapiens||RefGeneNoncode|NR_033926||3.8657600|-0.2730854	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n409540|NR_033926|lncRNA|Homosapiens||RefGeneNoncode|NR_033926||3.8657600|-0.2730854	chr1	 27650364	 27653015	+	NA	NA	NA	NA	TMEM222	"hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80chr1:27648636-27662891"	NA	inter
CUST_17702_PI429285431	1.1038778	A	1.7110087	A	0.656500993727381	0	lncRNA	19431-1_{1..837}	lnc-C15orf2-9:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-9:4	chr15	 24523358	 24524194	+	lnc-C15orf2-9	lnc-C15orf2-9:4	XLOC_011174	linc-C15orf2-8	NA	NA	NA	inter
CUST_303_PI429201921	1.4907633	A	1.0131202	A	1.3924669636909	0	lncRNA	208-2_{3001..6000}	TC22000983.hg.1	TCONS_00029333-XLOC_014161 // Rinn lincRNAs // linc-AIFM3 chr22:+:21311690-21318877 // chr22 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr22:+:21311690-21318877	NA	Affy_HUMAN_HTA2.0	TCONS_00029333-XLOC_014161	linc-AIFM3	chr22	 21311690	 21318877	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013225	6.2688746	P	6.226193	P	1.03002660365761	0	lncRNA	TCONS_l2_00025962	NA	NA	NA	NA	XLOC_l2_013458	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013458), lincRNA [TCONS_l2_00025962]"	chr7:64639649-64639708	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025962	TCONS_l2_00025962	chr7	 64639649	 64639708	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38410_PI429285431	2.37705	A	1.9324903	A	1.36089871675552	0	lncRNA	39440-1_{1..631}	n382366|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yyp.1||-0.7744120|-0.2343722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n382366|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yyp.1||-0.7744120|-0.2343722	chr15	 25362556	 25363186	+	NA	NA	NA	NA	SNRPN	NA	chr15:25352556-25430017	inter
CUST_16719_PI429285431	10.043571	P	9.487131	P	1.47063578950238	0	lncRNA	18426-1_{1..1012}	lnc-RGL4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGL4-3:1	chr22	 23894435	 23895446	+	lnc-RGL4-3	lnc-RGL4-3:1	XLOC_014174	linc-RGL4-4	NA	NA	NA	inter
CUST_36150_PI429285431	4.919992	P	5.203117	P	0.821808979887898	0	lncRNA	37425-1_{1..1947}	n344712|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_261|NULL|-1.4103200|-0.3463430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344712|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_261|NULL|-1.4103200|-0.3463430	chr8	  8150268	  8152214	-	NA	NA	NA	NA	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-29.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30"	NA	inter
CUST_14310_PI429285431	7.6346397	P	7.0691957	P	1.47984287169257	0	lncRNA	15969-1_{1..250}	lnc-NOL6-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOL6-1:3	chr9	 33510985	 33511234	-	lnc-NOL6-1	lnc-NOL6-1:3	XLOC_007668	linc-NOL6-4	NA	NA	NA	inter
CUST_7294_PI429285431	0.90368176	A	0.9005204	A	1.00219369039641	0	lncRNA	8292-1_{1..324}	"transcript_id ""ENST00000582079.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582079.1"" | genecode_v17"	chr12	 57907700	 57908023	+	ENSG00000264046.1	ENST00000582079.1	RN7SL312P	RN7SL312P-201	MARS	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-28.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-23.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10chr12:57897700-57910438"	NA	inner
CUST_1777_PI429285431	0.90587	A	0.9168023	A	0.992450945409824	0	lncRNA	1763-1_{1..356}	"transcript_id ""ENST00000507808.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507808.1"" | genecode_v17"	chr4	 58471860	 58472215	-	ENSG00000250333.1	ENST00000507808.1	RP11-4O3.1	RP11-4O3.1-001	NA	NA	NA	inter
CUST_43240_PI429285431	1.2205048	A	1.2039527	A	1.01153910921168	0	lncRNA	48057-1_{1..806}	ENST00000436529 havana:sense_intronic chromosome:GRCh37:21:30743268:30746029:1 gene:ENSG00000228817 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>ENST00000436529 havana:sense_intronic chromosome:GRCh37:21:30743268:30746029:1 gene:ENSG00000228817 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr21	 30743268	 30744073	+	ENSG00000228817	ENST00000436529	NA	NA	BACH1	NA	chr21:30733268-30734217	inter
LNCA_21_P0013572	0.92251164	A	0.9085924	A	1.00969477474877	0	lncRNA	TCONS_l2_00028765	NA	NA	NA	NA	XLOC_l2_014820	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014820), lincRNA [TCONS_l2_00028765]"	chr9:67282369-67288092	hs|9q13	Agilent_HUMAN_G3V2	TCONS_l2_00028765	TCONS_l2_00028765	chr9	 67282369	 67288092	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25512_PI429285431	0.9132652	A	0.9020234	A	1.00782266034555	0	lncRNA	27042-1_{1..443}	lnc-FMR1NB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FMR1NB-2:1	chrX	147628765	147629207	+	lnc-FMR1NB-2	lnc-FMR1NB-2:1	ENSG00000223516.1	AFF2-IT1	AFF2	NA	chrX:147618765-147638918	inner
CUST_1769_PI429285431	1.6030809	A	1.023896	A	1.49400492086652	0	lncRNA	1755-1_{1..422}	"transcript_id ""ENST00000509711.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509711.1"" | genecode_v17"	chr4	 55809796	 55810217	+	ENSG00000248317.1	ENST00000509711.1	RP11-463H12.2	RP11-463H12.2-001	NA	NA	NA	inter
CUST_32706_PI429285431	0.9228839	A	0.9215888	A	1.00089809796222	0	lncRNA	34350-1_{1..1771}	n339337|AK097694|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1769|NULL|-1.0647500|-0.2326937	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339337|AK097694|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1769|NULL|-1.0647500|-0.2326937	chr16	 89497372	 89499142	+	NA	NA	NA	NA	ANKRD11	NA	chr16:89487372-89530902	inter
CUST_20386_PI429285431	3.575904	P	3.4623632	P	1.08188023461096	0	lncRNA	22028-1_{1..560}	lnc-OR2AT4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR2AT4-1:1	chr11	 74851130	 74851689	-	lnc-OR2AT4-1	lnc-OR2AT4-1:1	ENSG00000255395.1	CTD-2562J17.2	NA	NA	NA	inter
CUST_1348_PI429285431	9.622943	P	10.612316	P	0.50369663567724	0	lncRNA	1337-1_{1..3000}	"transcript_id ""ENST00000568686.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568686.1"" | genecode_v17"	chr3	 44158791	 44161790	+	ENSG00000261786.1	ENST00000568686.1	RP4-555D20.2	RP4-555D20.2-001	NA	NA	NA	inter
CUST_40799_PI429285431	12.816913	P	13.4407425	P	0.648946072419335	0	lncRNA	41507-1_{1..2849}	n410559|NR_037791|lncRNA|Homosapiens||RefGeneNoncode|NR_037791||8.1542600|-0.1152848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410559|NR_037791|lncRNA|Homosapiens||RefGeneNoncode|NR_037791||8.1542600|-0.1152848	chr19	 41284123	 41286971	+	NA	NA	NA	NA	RAB4B	NA	chr19:41284124-41302849	inter
CUST_10608_PI429285431	0.9242672	A	0.97371167	A	0.966308347903782	0	lncRNA	12138-1_{1..1615}	lnc-ABT1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABT1-3:2	chr6	 26680880	 26682494	+	lnc-ABT1-3	lnc-ABT1-3:2	XLOC_005214	linc-HIST1H2AG-4	NA	NA	NA	inter
CUST_20156_PI429285431	0.91850203	A	0.9059369	A	1.00874752234241	0	lncRNA	21801-1_{1..850}	lnc-GABRE-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-GABRE-1:2	chrX	151079495	151080344	-	lnc-GABRE-1	lnc-GABRE-1:2	ENSG00000229967.1	RP11-366F6.2	MAGEA4	NA	chrX:151081361-151089927	inter
LNCA_21_P0003143	0.9250064	A	0.9128105	A	1.00848938588306	0	lncRNA	TCONS_00006576	NA	NA	NA	NA	XLOC_003199	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003199), lincRNA [TCONS_00006576]"	chr3:106142206-106142147	hs|3q13.11	Agilent_HUMAN_G3V2	TCONS_00006576	TCONS_00006576	chr3	106142147	106142206	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14110_PI429285431	1.5558054	A	0.9217258	A	1.55194733412987	0	lncRNA	15757-1_{1..577}	lnc-RP9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP9-1:1	chr7	 33771427	 33772003	-	lnc-RP9-1	lnc-RP9-1:1	XLOC_006403	linc-RP9-1	NA	NA	NA	inter
CUST_119_PI429285431	0.9089109	A	0.9094947	A	0.999595422539531	0	lncRNA	111-1_{1..726}	"transcript_id ""ENST00000590848.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590848.1"" | genecode_v17"	chr1	   719750	   720475	+	ENSG00000237491.3	ENST00000590848.1	RP11-206L10.9	RP11-206L10.9-007	NA	NA	NA	inter
CUST_45569_PI429285431	0.90129316	A	0.9022316	A	0.999349734474201	0	lncRNA	49966-2_{3001..6000}	"gi|211971053|ref|NR_024380.1| Homo sapiens zinc finger protein 91 pseudogene (LOC441666), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|211971053|ref|NR_024380.1| Homo sapiens zinc finger protein 91 pseudogene (LOC441666), non-coding RNA"	Chr10	 42830314	 42833313	-	441666	NR_024380.1	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_29163_PI429285431	4.982697	P	5.386395	P	0.755918184289958	0	lncRNA	30906-1_{1..456}	n326674|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091258|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091258|-0.7984970|-0.1666081	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326674|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091258|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091258|-0.7984970|-0.1666081	chr1	 23748216	 23748671	-	NA	NA	NA	NA	TCEA3	NA	chr1:23738216-23751261	inner
CUST_34907_PI429285431	0.9083631	A	0.90179044	A	1.00456621427681	0	lncRNA	36331-1_{1..891}	n341825|K03207|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4304|NULL|2.8376100|-0.1087004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341825|K03207|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4304|NULL|2.8376100|-0.1087004	chr12	 11460016	 11460906	-	NA	NA	NA	NA	PRB4	NA	chr12:11460015-11463366	inner
CUST_39891_PI429285431	0.8987057	A	0.8935809	A	1.00355855735507	0	lncRNA	40777-2_{3001..5511}	n406583|NR_024099|lncRNA|Homosapiens||RefGeneNoncode|NR_024099||3.4893500|-0.3528647	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406583|NR_024099|lncRNA|Homosapiens||RefGeneNoncode|NR_024099||3.4893500|-0.3528647	chr1	216679595	216682105	-	NA	NA	NA	NA	ESRRG	NA	chr1:216676588-216906795	inner
CUST_2545_PI429285431	1.3450944	A	1.2315811	A	1.08185961249606	0	lncRNA	2533-1_{1..301}	"transcript_id ""ENST00000420759.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420759.1"" | genecode_v17"	chr6	 58291908	 58292208	+	ENSG00000225096.1	ENST00000420759.1	XXbac-BPG55C20.7	XXbac-BPG55C20.7-001	NA	NA	NA	inter
CUST_38952_PI429285431	4.082484	P	4.1847997	P	0.931536562053846	0	lncRNA	39938-1_{1..619}	n385124|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tdl.1||0.2724120|-0.2602700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385124|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tdl.1||0.2724120|-0.2602700	chr7	 33075807	 33076425	-	NA	NA	NA	NA	NT5C3	NA	chr7:33065807-33086426	inner
CUST_25970_PI429285431	3.277968	P	3.3593013	P	0.945183729551124	0	lncRNA	27490-1_{1..569}	lnc-CYP7B1-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYP7B1-6:4	chr8	 65152391	 65152959	-	lnc-CYP7B1-6	lnc-CYP7B1-6:4	ENSG00000253554.1	RP11-32K4.1	NA	NA	NA	inter
CUST_9988_PI429285431	0.9200413	A	1.5337642	A	0.653508134908676	0	lncRNA	11513-1_{1..333}	lnc-EMB-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EMB-3:3	chr5	 50265757	 50266089	-	lnc-EMB-3	lnc-EMB-3:3	XLOC_004815	linc-EMB-3	NA	NA	NA	inter
CUST_27338_PI429285431	2.6888685	A	3.723624	P	0.488098593637123	0	lncRNA	28898-1_{1..2597}	n324494|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040975|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040975|-0.9706750|-0.3306585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324494|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040975|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040975|-0.9706750|-0.3306585	chr6	 53902937	 53905533	+	NA	NA	NA	NA	MLIP	NA	chr6:53892937-53980052	inner
CUST_13953_PI429285431	0.89971054	A	0.89849925	A	1.00083995481297	0	lncRNA	15598-3_{6001..7390}	lnc-FAM120B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM120B-3:2	chr6	170497080	170498469	+	lnc-FAM120B-3	lnc-FAM120B-3:2	XLOC_005563	linc-FAM120B-2	NA	NA	NA	inter
CUST_14130_PI429285431	2.8071349	A	1.8769833	A	1.90547621512874	0	lncRNA	15780-1_{1..389}	lnc-DEC1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DEC1-4:1	chr9	118506436	118506824	+	lnc-DEC1-4	lnc-DEC1-4:1	XLOC_007532	linc-PAPPA-3	NA	NA	NA	inter
CUST_28826_PI429285431	1.2196718	A	1.155586	A	1.04542227173913	0	lncRNA	30535-1_{1..3000}	n326240|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000089728|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000089728|0.2068740|-0.2951607	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326240|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000089728|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000089728|0.2068740|-0.2951607	chr1	212059600	212062599	-	NA	NA	NA	NA	INTS7	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70chr1:212113741-212209002"	NA	inter
CUST_28343_PI429285431	1.8139757	A	0.91387635	A	1.86619449258796	0	lncRNA	29989-1_{1..692}	n325649|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045522|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045522|-1.2454700|-0.3847544	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325649|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045522|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045522|-1.2454700|-0.3847544	chr13	 96622723	 96623414	-	NA	NA	NA	NA	UGGT2	NA	chr13:96612723-96639877	inner
CUST_19510_PI429285431	5.0869045	P	4.147682	P	1.91749458025947	0	lncRNA	21166-1_{1..392}	lnc-NSUN6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NSUN6-2:1	chr10	 18948161	 18948552	-	lnc-NSUN6-2	lnc-NSUN6-2:1	ENSG00000152487.5	RP11-139J15.2	NSUN6	NA	chr10:18938161-18940550	inter
CUST_2971_PI429285431	0.9033039	A	0.9054934	A	0.998483505290113	0	lncRNA	2950-1_{1..497}	"transcript_id ""ENST00000605539.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605539.1"" | genecode_v17"	chr8	  1922984	  1923480	+	ENSG00000270988.1	ENST00000605539.1	RP11-439C15.5	RP11-439C15.5-001	KBTBD11	NA	chr8:1922044-1933480	inner
CUST_7180_PI429285431	0.9200114	A	0.92174196	A	0.998801186367084	0	lncRNA	7387-1_{1..217}	"transcript_id ""ENST00000516126.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516126.1"" | genecode_v17"	chr2	191417990	191418206	-	ENSG00000251935.1	ENST00000516126.1	RN7SKP179	RN7SKP179-201	NA	NA	NA	inter
CUST_48244_PI429285431	0.9228621	A	1.0383044	A	0.923099264496068	0	lncRNA	52106-1_{1..2085}	hg19_lincRNAsTranscripts_TCONS_l2_00001905 range=chr1:246934661-246945218 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001905 range=chr1:246934661-246945218 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	246934661	246936745	-	NA	NA	NA	NA	LOC100130097	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80chr1:246935180-246948062"	NA	inter
CUST_22251_PI429285431	1.3070385	A	0.917829	A	1.30967559294495	0	lncRNA	23852-1_{1..566}	lnc-SYCP3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SYCP3-2:1	chr12	102053492	102054057	-	lnc-SYCP3-2	lnc-SYCP3-2:1	ENSG00000257514.1	RP11-755O11.2	MYBPC1	"hg19_refFlat_MYBPC1:range=chr12:101988849-1020781735'pad=0,hg19_refFlat_MYBPC1:range=chr12:101988849-1020781735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MYBPC1:range=chr12:101988849-1020794605'pad=0,hg19_refFlat_MYBPC1:range=chr12:101988849-1020794605'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MYBPC1:range=chr12:101988849-1020794105'pad=0,hg19_refFlat_MYBPC1:range=chr12:101988849-1020794105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MYBPC1:range=chr12:101988849-1020781835'pad=0,hg19_refFlat_MYBPC1:range=chr12:101988849-1020781835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40chr12:102043492-102063748"	NA	inner
CUST_10038_PI429285431	0.921327	A	1.0571353	A	0.910159754720138	0	lncRNA	11565-1_{1..274}	lnc-AC003101.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC003101.1.1-3:1	chr17	 30023912	 30024185	+	lnc-AC003101.1.1-3	lnc-AC003101.1.1-3:1	XLOC_012167	linc-SUZ12-2	NA	NA	NA	inter
CUST_24931_PI429285431	2.7650073	A	3.074519	P	0.806914824440329	0	lncRNA	26471-1_{1..439}	lnc-RP5-1047A19.4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP5-1047A19.4.1-1:1	chr8	146219885	146220323	+	lnc-RP5-1047A19.4.1-1	lnc-RP5-1047A19.4.1-1:1	ENSG00000255164.1	RP5-1047A19.4	NA	NA	NA	inter
CUST_34317_PI429285431	3.0287337	A	3.5307336	P	0.706127251137387	0	lncRNA	35811-1_{1..1343}	n341178|BC029940|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3644|NULL|6.9169600|-0.0582429	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341178|BC029940|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3644|NULL|6.9169600|-0.0582429	chr7	  5428136	  5429478	-	NA	NA	NA	NA	TNRC18	NA	chr7:5418136-5461779	inner
CUST_31807_PI429285431	0.93985534	A	0.9282893	A	1.00804918995419	0	lncRNA	33544-1_{1..2149}	n338349|AK094597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|743|NULL|-0.9991970|-0.1349617	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338349|AK094597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|743|NULL|-0.9991970|-0.1349617	chr19	 16698071	 16700219	+	NA	NA	NA	NA	MED26	NA	chr19:16688071-16710220	inner
CUST_18408_PI429285431	1.8674955	A	2.8266768	A	0.51434871292523	0	lncRNA	20133-1_{1..424}	lnc-GNAT1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNAT1-1:9	chr3	 50254670	 50255093	+	lnc-GNAT1-1	lnc-GNAT1-1:9	ENSG00000188338	SLC38A3	SLC38A3	NA	chr3:50244670-50258406	inner
LNCA_21_P0006857	1.2142069	A	0.9445287	A	1.20553889650619	0	lncRNA	TCONS_00018162	NA	NA	NA	NA	XLOC_008454	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008454), lincRNA [TCONS_00018162]"	chr10:37668968-37669027	hs|10p11.21	Agilent_HUMAN_G3V2	TCONS_00018162	TCONS_00018162	chr10	 37668968	 37669027	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41031_PI429285431	9.983779	P	10.434159	P	0.731850056258478	0	lncRNA	41690-1_{1..2667}	n411666|NR_040252|lncRNA|Homosapiens||RefGeneNoncode|NR_040252||5.9723900|-0.1431327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411666|NR_040252|lncRNA|Homosapiens||RefGeneNoncode|NR_040252||5.9723900|-0.1431327	chr16	  4746510	  4749176	-	NA	NA	NA	NA	MGRN1	NA	chr16:4736510-4740975	inner
CUST_19873_PI429285431	2.9246747	A	2.4277294	A	1.41122233568669	0	lncRNA	21529-1_{1..838}	lnc-STOM-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STOM-2:2	chr9	124044747	124045584	-	lnc-STOM-2	lnc-STOM-2:2	ENSG00000239593.1	RP11-477J21.6	LOC100128064	"hg19_refFlat_GSN:range=chr9:124044730-1240948815'pad=0,hg19_refFlat_GSN:range=chr9:124044730-1240948815'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80chr9:124042136-124049119"	NA	inner
LNCA_21_P0012962	1.0129415	A	1.6107762	A	0.660744904812422	0	lncRNA	THC2780523	NA	NA	NA	NA	XLOC_l2_011805	NA	NA	THC2780523	NA	"BROAD Institute lincRNA (XLOC_l2_011805), lincRNA [TCONS_l2_00023572]"	chr5:148468860-148468919	hs|5q32	Agilent_HUMAN_G3V2	THC2780523	THC2780523	chr5	148468860	148468919	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13611_PI429285431	0.9286099	A	0.8987675	A	1.02090059643886	0	lncRNA	15250-1_{1..1343}	lnc-LINS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LINS-2:1	chr15	101364680	101366022	-	lnc-LINS-2	lnc-LINS-2:1	XLOC_011610	linc-LINS-1	NA	NA	NA	inter
CUST_46202_PI429285431	0.9307208	A	0.93035775	A	1.00025167874969	0	lncRNA	50445-2_{3001..3972}	"gi|213688420|ref|NR_024507.1| Homo sapiens long intergenic non-protein coding RNA 598 (LINC00598), transcript variant TTL-B2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|213688420|ref|NR_024507.1| Homo sapiens long intergenic non-protein coding RNA 598 (LINC00598), transcript variant TTL-B2, non-coding RNA"	Chr13	 40924269	 40925240	-	646982	NR_024507.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
CUST_9100_PI429285431	8.175472	P	8.036262	P	1.10130189293478	0	lncRNA	10622-1_{1..331}	lnc-TMEM86A-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM86A-2:5	chr11	 18625319	 18625649	+	lnc-TMEM86A-2	lnc-TMEM86A-2:5	ENSG00000247595	RP11-504G3.1	SPTY2D1	NA	chr11:18627948-18635440	inter
CUST_10530_PI429285431	0.953221	A	0.98171943	A	0.980440217738077	0	lncRNA	12059-1_{1..488}	lnc-RP11-497E19.2.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-497E19.2.1-1:5	chr14	 85886028	 85886515	+	lnc-RP11-497E19.2.1-1	lnc-RP11-497E19.2.1-1:5	XLOC_010889	linc-FLRT2-2	NA	NA	NA	inter
CUST_2528_PI429285431	1.3011445	A	1.2155862	A	1.06109829006111	0	lncRNA	2516-1_{1..660}	"transcript_id ""ENST00000448211.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448211.1"" | genecode_v17"	chr6	 41486111	 41486770	+	ENSG00000226917.1	ENST00000448211.1	RP11-328M4.3	RP11-328M4.3-001	NA	NA	NA	inter
CUST_30766_PI429285431	1.798714	A	1.5135294	A	1.21856617529798	0	lncRNA	32551-1_{1..341}	n336604|Z34280|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326962|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326962|0.5309770|-0.0936936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336604|Z34280|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326962|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326962|0.5309770|-0.0936936	chr11	  1213235	  1213575	+	NA	NA	NA	NA	MUC5AC	NA	chr11:1203235-1222364	inter
CUST_27816_PI429285431	1.247334	A	1.1078867	A	1.10148305418229	0	lncRNA	29402-1_{1..359}	n325044|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078255|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078255|-1.1398700|-0.2843806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325044|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078255|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078255|-1.1398700|-0.2843806	chr20	 21022198	 21022556	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008189	1.0305679	A	0.9748064	A	1.03940759067922	0	lncRNA	TCONS_00022069	NA	NA	NA	NA	XLOC_010673	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010673), lincRNA [TCONS_00022069]"	chr13:84238422-84238363	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00022069	TCONS_00022069	chr13	 84238363	 84238422	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17803_PI429285431	0.92052734	A	1.2224679	A	0.811160575246472	0	lncRNA	19537-1_{1..3000}	lnc-ARFGEF2-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARFGEF2-3:8	chr20	 46996823	 46999822	+	lnc-ARFGEF2-3	lnc-ARFGEF2-3:8	XLOC_013551	linc-ARFGEF2-4	NA	NA	NA	inter
CUST_6733_PI429285431	2.157734	A	2.979053	A	0.565924303461429	0	lncRNA	6681-1_{1..698}	"transcript_id ""ENST00000434176.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434176.1"" | genecode_v17"	chr20	 55152619	 55153316	+	ENSG00000225657.2	ENST00000434176.1	RP5-843L14.1	RP5-843L14.1-001	NA	NA	NA	inter
CUST_4727_PI429285431	3.1815424	P	3.3820899	P	0.870220253707521	0	lncRNA	4672-1_{1..725}	"transcript_id ""ENST00000551545.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551545.1"" | genecode_v17"	chr14	 19894369	 19895093	+	ENSG00000215394.4	ENST00000551545.1	LINC00516	LINC00516-001	NA	NA	NA	inter
CUST_10136_PI429285431	1.3922322	A	1.7853639	A	0.761474853555429	0	lncRNA	11658-1_{1..305}	lnc-SEC61G-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEC61G-7:3	chr7	 53466103	 53466407	-	lnc-SEC61G-7	lnc-SEC61G-7:3	XLOC_006444	linc-COBL-3	NA	NA	NA	inter
CUST_11329_PI429285431	0.9537411	A	1.0072634	A	0.963580898649526	0	lncRNA	12892-1_{1..400}	lnc-IGFBP1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGFBP1-2:2	chr7	 46030132	 46030531	+	lnc-IGFBP1-2	lnc-IGFBP1-2:2	XLOC_006080	linc-C7orf65-10	NA	NA	NA	inter
CUST_36126_PI429285431	0.9433236	A	0.9250995	A	1.01271210404212	0	lncRNA	37414-1_{1..1324}	n344700|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_249|NULL|-1.4168000|-0.2806171	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344700|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_249|NULL|-1.4168000|-0.2806171	chrX	 46173492	 46174815	-	NA	NA	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-62.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.71;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_26169_PI429285431	1.7231143	A	2.368586	A	0.639283737836143	0	lncRNA	27680-1_{1..529}	lnc-CD63-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CD63-1:1	chr12	 56156362	 56156890	-	lnc-CD63-1	lnc-CD63-1:1	ENSG00000257509.1	RP11-762I7.4	SARNP	NA	chr12:56146362-56166412	inner
CUST_22765_PI429285431	4.532547	P	4.4515123	P	1.0577764051697	0	lncRNA	24347-1_{1..819}	lnc-C8orf76-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C8orf76-1:1	chr8	124214448	124215266	-	lnc-C8orf76-1	lnc-C8orf76-1:1	ENSG00000204949.4	RP11-539E17.4	FAM83A	NA	chr8:124204448-124222318	inner
CUST_48281_PI429285431	8.050219	P	7.9566355	P	1.06701725017086	0	lncRNA	52141-2_{3001..3174}	hg19_lincRNAsTranscripts_TCONS_l2_00001049 range=chr1:16944766-16950434 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001049 range=chr1:16944766-16950434 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 16947766	 16947939	-	NA	NA	NA	NA	NBPF1	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr1:16934766-16939982"	NA	inter
CUST_28290_PI429285431	0.9147484	A	0.9068242	A	1.0055077490741	0	lncRNA	29929-1_{1..394}	n325589|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000156139|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000156139|-0.9670680|-0.4506878	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325589|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000156139|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000156139|-0.9670680|-0.4506878	chr16	 26241049	 26241442	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11271_PI429285431	4.2385893	P	3.5865855	P	1.57134917219945	0	lncRNA	12832-1_{1..284}	lnc-GTF2B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GTF2B-2:1	chr1	 88995806	 88996089	-	lnc-GTF2B-2	lnc-GTF2B-2:1	XLOC_000905	linc-SEP15-5	NA	NA	NA	inter
CUST_51598_PI429285431	3.425846	P	3.837472	P	0.751775601859786	0	lncRNA	55164-1_{1..318}	hg19_lincRNAsTranscripts_TCONS_l2_00011159 range=chr17:25667040-25680817 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011159 range=chr17:25667040-25680817 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 25667040	 25667357	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25887_PI429285431	1.0391144	A	1.5637598	A	0.695129944907909	0	lncRNA	27407-1_{1..303}	lnc-MEPCE-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MEPCE-2:1	chr7	100036004	100036306	+	lnc-MEPCE-2	lnc-MEPCE-2:1	ENSG00000240211.1	RP11-758P17.3	ZCWPW1	"hg19_refFlat_PPP1R35:range=chr7:100032983-1000339975'pad=0,hg19_refFlat_PPP1R35:range=chr7:100032983-1000339975'pad=0 3'pad=0 strand=- repeatMasking=none,-107.60chr7:100026004-100026302"	NA	inter
CUST_30006_PI429285431	13.207088	P	13.204926	P	1.0014997076428	0	lncRNA	31772-1_{1..258}	n334406|S82616|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000217175|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000217175|-0.1108240|-0.4351965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334406|S82616|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000217175|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000217175|-0.1108240|-0.4351965	chr8	100890359	100890616	-	NA	NA	NA	NA	VPS13B	NA	chr8:100880359-100889808	inner
CUST_15119_PI429285431	2.049799	A	2.5599241	A	0.702161548896744	0	lncRNA	16779-1_{1..604}	lnc-PRKAB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PRKAB2-1:1	chr1	146644552	146645155	-	lnc-PRKAB2-1	lnc-PRKAB2-1:1	XLOC_001002	linc-PRKAB2-2	PRKAB2	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80chr1:146634552-146644129"	NA	inter
CUST_44859_PI429285431	1.6924438	A	1.0693605	A	1.54016327363879	0	lncRNA	49385-1_{1..566}	"gi|397139169|ref|XR_158812.1| PREDICTED: Homo sapiens uncharacterized LOC100996269 (LOC100996269), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139169|ref|XR_158812.1| PREDICTED: Homo sapiens uncharacterized LOC100996269 (LOC100996269), misc_RNA"	NA	NA	NA	NA	NA	XR_158812.1	NA	NA	NA	NA	NA	Unknown
CUST_8668_PI429285431	6.6470175	P	6.6488247	P	0.998748128660802	0	lncRNA	10219-1_{1..421}	lnc-DBN1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DBN1-2:2	chr5	176874645	176875065	-	lnc-DBN1-2	lnc-DBN1-2:2	ENSG00000246334	RP11-1334A24.4	PRR7	NA	chr5:176873796-176883287	inner
CUST_50656_PI429285431	2.110894	A	2.310369	A	0.87086741627034	0	lncRNA	54332-1_{1..550}	hg19_lincRNAsTranscripts_TCONS_l2_00002984 range=chr10:38156441-38173078 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002984 range=chr10:38156441-38173078 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 38156441	 38156990	+	NA	NA	NA	NA	ZNF248	NA	chr10:38146441-38146486	inter
CUST_30236_PI429285431	1.8078991	A	1.8150619	A	0.995047429993055	0	lncRNA	32011-1_{1..757}	n335104|AL355684|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250339|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250339|-1.1549700|-0.1752333	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335104|AL355684|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250339|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250339|-1.1549700|-0.1752333	chr21	 43305203	 43305959	+	NA	NA	NA	NA	PRDM15	NA	chr21:43295203-43299591	inner
LNCA_21_P0012030	1.4560965	A	0.92605877	A	1.44396695829245	0	lncRNA	XR_109901	XR_109901	XR_109901	NA	NA	LOC100505498	uncharacterized LOC100505498	ENST00000414195	THC2718566	NA	"PREDICTED: Homo sapiens hypothetical LOC100505498, transcript variant 1 (LOC100505498), miscRNA [XR_109901]"	chr2:145939963-145940022	hs|2q22.3	Agilent_HUMAN_G3V2	XR_109901	XR_109901	chr2	145939963	145940022	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36711_PI429285431	8.372439	P	8.596223	P	0.856316482474121	0	lncRNA	37890-3_{6001..6105}	n345197|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_746|NULL|-1.3517400|-0.2884354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345197|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_746|NULL|-1.3517400|-0.2884354	chr13	 45927524	 45927628	-	NA	NA	NA	NA	TPT1	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-14.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40chr13:45911524-45915297"	NA	inter
CUST_8786_PI429285431	7.7102776	P	7.6450896	P	1.04622126575018	0	lncRNA	10326-1_{1..949}	lnc-FBN2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FBN2-2:3	chr5	127418427	127419375	-	lnc-FBN2-2	lnc-FBN2-2:3	ENSG00000245937	CTC-228N24.3	SLC12A2	NA	chr5:127419483-127428767	inter
LNCA_21_P0003996	0.9702412	A	0.925489	A	1.03150599068541	0	lncRNA	ENST00000506656	NA	NA	NA	NA	XLOC_004374	NA	ENST00000506656	NA	NA	"BROAD Institute lincRNA (XLOC_004374), lincRNA [TCONS_00009395]"	chr5:45098326-45098385	hs|5p12	Agilent_HUMAN_G3V2	ENST00000506656	ENST00000506656	chr5	 45098326	 45098385	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23304_PI429285431	5.383523	P	5.557434	P	0.886436381856377	0	lncRNA	24875-1_{1..437}	lnc-IL23A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL23A-2:2	chr12	 56708313	 56708749	+	lnc-IL23A-2	lnc-IL23A-2:2	ENSG00000257303.1	RP11-977G19.11	PAN2	NA	chr12:56710007-56718592	inner
CUST_16_PI429285431	1.5519202	A	2.2372205	A	0.621876368305229	0	lncRNA	15-1_{1..639}	"transcript_id ""ENST00000532453.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000532453.1"" | genecode_v17"	chr8	 10920157	 10920795	-	ENSG00000254839.1	ENST00000532453.1	AF131215.6	AF131215.6-001	XKR6	NA	chr8:10910157-10934599	inner
CUST_19974_PI429285431	7.011618	P	7.1370945	P	0.916701220873678	0	lncRNA	21627-1_{1..248}	lnc-CDK5-2:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK5-2:14	chr7	150709548	150709795	-	lnc-CDK5-2	lnc-CDK5-2:14	ENSG00000181652.11	ATG9B	NOS3	"hg19_refFlat_NOS3:range=chr7:150690892-1507112575'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507112575'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.90chr7:150699548-150711687"	NA	inter
CUST_17327_PI429285431	0.92202294	A	0.91773754	A	1.00297482897546	0	lncRNA	19045-1_{1..571}	lnc-CXXC11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CXXC11-1:1	chr2	242786717	242787287	+	lnc-CXXC11-1	lnc-CXXC11-1:1	XLOC_001922	linc-C2orf85	PDCD1	NA	chr2:242792033-242797188	inter
CUST_48535_PI429285431	1.0529228	A	2.3899107	A	0.395846252916254	0	lncRNA	52384-1_{1..479}	hg19_lincRNAsTranscripts_TCONS_l2_00013844 range=chr2:98290914-98306792 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013844 range=chr2:98290914-98306792 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 98290914	 98291392	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_419_PI429285431	3.2113137	P	3.5729108	P	0.778302501968562	0	lncRNA	411-1_{1..660}	"transcript_id ""ENST00000446174.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446174.1"" | genecode_v17"	chr1	144276398	144277057	-	ENSG00000235398.3	ENST00000446174.1	LINC00623	LINC00623-009	NA	NA	NA	inter
CUST_28337_PI429285431	1.1859758	A	1.1125724	A	1.05219594844746	0	lncRNA	29982-1_{1..492}	n325642|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045717|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045717|-1.3178200|-0.3749500	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325642|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045717|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045717|-1.3178200|-0.3749500	chr13	102875550	102876041	+	NA	NA	NA	NA	FGF14	NA	chr13:102865550-102888036	inner
CUST_2953_PI429285431	1.0571942	A	0.90568435	A	1.11073129792729	0	lncRNA	2934-1_{1..456}	"transcript_id ""ENST00000418523.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418523.1"" | genecode_v17"	chr7	155059009	155059464	+	ENSG00000225612.1	ENST00000418523.1	AC099552.2	AC099552.2-001	NA	NA	NA	inter
CUST_29787_PI429285431	0.91170746	A	1.4112058	A	0.707352702090522	0	lncRNA	31550-1_{1..696}	n333489|BC029953|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091971|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091971|-0.9582810|-0.1338451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333489|BC029953|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091971|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091971|-0.9582810|-0.1338451	chr9	 38068019	 38068714	+	NA	NA	NA	NA	SHB	"hg19_refFlat_SHB:range=chr9:37919818-380686425'pad=0,hg19_refFlat_SHB:range=chr9:37919818-380686425'pad=0 3'pad=0 strand=- repeatMasking=none,-114.30chr9:38058019-38069210"	NA	inner
CUST_7915_PI429285431	0.9041321	A	0.89804244	A	1.00422995175714	0	lncRNA	9529-2_{3001..6000}	lnc-TMEM189-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM189-2:1	chr20	 48884905	 48887904	-	lnc-TMEM189-2	lnc-TMEM189-2:1	ENSG00000250931	ENST00000513193	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.31;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70"	NA	inter
CUST_28538_PI429285431	0.9484851	A	1.4239874	A	0.719216338417366	0	lncRNA	30210-1_{1..575}	n325887|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050242|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050242|-1.0238700|-0.3560034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325887|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050242|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050242|-1.0238700|-0.3560034	chr10	110297722	110298296	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6526_PI429285431	1.3919652	A	1.2261376	A	1.12180941789484	0	lncRNA	6469-1_{1..661}	"transcript_id ""ENST00000595649.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595649.1"" | genecode_v17"	chr19	 42051554	 42052214	+	ENSG00000268027.1	ENST00000595649.1	AC006129.2	AC006129.2-001	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80"	NA	inter
CUST_21888_PI429285431	1.5406144	A	1.8359365	A	0.81489037746004	0	lncRNA	23497-1_{1..344}	lnc-OST4-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OST4-2:3	chr2	 27237369	 27237712	-	lnc-OST4-2	lnc-OST4-2:3	ENSG00000205500.4	AC013472.3	MAPRE3	NA	chr2:27227369-27247429	inner
CUST_2871_PI429285431	0.92625934	A	1.0037619	A	0.947696779299914	0	lncRNA	2852-1_{1..653}	"transcript_id ""ENST00000421513.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421513.1"" | genecode_v17"	chr7	 68824068	 68824720	-	ENSG00000225718.1	ENST00000421513.1	RP11-3P22.2	RP11-3P22.2-002	NA	NA	NA	inter
LNCA_21_P0008738	1.665065	A	0.91739714	A	1.67907638122518	0	lncRNA	TCONS_00023672	NA	NA	NA	NA	XLOC_011471	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011471), lincRNA [TCONS_00023672]"	chr15:48279929-48279870	hs|15q21.1	Agilent_HUMAN_G3V2	TCONS_00023672	TCONS_00023672	chr15	 48279870	 48279929	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34117_PI429285431	0.9048044	A	0.89540887	A	1.00653373747078	0	lncRNA	35640-1_{1..1065}	n340950|BC019905|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3415|NULL|-1.0421800|-0.4187849	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340950|BC019905|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3415|NULL|-1.0421800|-0.4187849	chr11	  4096277	  4097341	+	NA	NA	NA	NA	STIM1	"hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr11:4086277-4107729"	NA	inner
CUST_10724_PI429285431	5.7448463	P	5.7563653	P	0.99204742798354	0	lncRNA	12262-1_{1..356}	lnc-BTG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTG1-1:1	chr12	 92662697	 92663052	-	lnc-BTG1-1	lnc-BTG1-1:1	XLOC_010151	linc-BTG1-1	NA	NA	NA	inter
CUST_21414_PI429285431	0.92752606	A	0.9276315	A	0.999926917231957	0	lncRNA	23034-1_{1..413}	lnc-MAB21L1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MAB21L1-3:2	chr13	 35108425	 35108837	-	lnc-MAB21L1-3	lnc-MAB21L1-3:2	ENSG00000225179.1	LINC00457	NA	NA	NA	inter
CUST_40353_PI429285431	5.978264	P	6.224097	P	0.843328724605234	0	lncRNA	41154-1_{1..1947}	n409076|NR_033172|lncRNA|Homosapiens||RefGeneNoncode|NR_033172||3.9081300|-0.2269262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409076|NR_033172|lncRNA|Homosapiens||RefGeneNoncode|NR_033172||3.9081300|-0.2269262	chr10	 48844035	 48845981	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23977_PI429285431	1.820436	A	2.7234836	A	0.534755900019241	0	lncRNA	25532-1_{1..544}	lnc-PPP4R1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP4R1-5:1	chr18	  9115667	  9116210	-	lnc-PPP4R1-5	lnc-PPP4R1-5:1	ENSG00000263847.1	RP11-143J12.3	NDUFV2	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70chr18:9105667-9125875"	NA	inner
LNCA_21_P0014474	3.4740217	P	3.8045657	P	0.795236565718143	0	lncRNA	XR_109997	XR_109997	XR_109997	NA	NA	LOC100506865	uncharacterized LOC100506865	NA	THC2645708	NA	"PREDICTED: Homo sapiens hypothetical LOC100506865 (LOC100506865), miscRNA [XR_109997]"	chr3:72712497-72712438	hs|3p13	Agilent_HUMAN_G3V2	XR_109997	XR_109997	chr3	 72712438	 72712497	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14639_PI429285431	7.739546	P	7.806864	P	0.954410618997405	0	lncRNA	16309-1_{1..254}	lnc-C10orf31-7:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf31-7:5	chr10	 10836802	 10837055	-	lnc-C10orf31-7	lnc-C10orf31-7:5	XLOC_008730	linc-KIN-6	NA	NA	NA	inter
CUST_8175_PI429285431	0.9736516	A	0.91980433	A	1.03802937440151	0	lncRNA	9776-1_{1..3000}	lnc-AC092295.7.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC092295.7.1-2:1	chr19	 37003324	 37006323	+	lnc-AC092295.7.1-2	lnc-AC092295.7.1-2:1	ENSG00000247034	ENST00000500856	ZNF260	"hg19_refFlat_ZNF260:range=chr19:37004902-370061405'pad=0,hg19_refFlat_ZNF260:range=chr19:37004902-370061405'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF146:range=chr19:36727343-367282215'pad=0,hg19_refFlat_ZNF146:range=chr19:36727343-367282215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20chr19:36993324-37015584"	NA	inner
CUST_34776_PI429285431	1.3912699	A	1.0310625	A	1.28361041449653	0	lncRNA	36214-2_{3001..6000}	n341684|AL832569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4155|NULL|1.3840500|-0.2047240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341684|AL832569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4155|NULL|1.3840500|-0.2047240	chr9	 35861734	 35864733	+	NA	NA	NA	NA	TMEM8B	"hg19_refFlat_OR1N2:range=chr9:125315449-1253164415'pad=0,hg19_refFlat_OR1N2:range=chr9:125315449-1253164415'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70chr9:35848734-35854844"	NA	inter
CUST_40084_PI429285431	1.7994832	A	1.5244057	A	1.21005909052451	0	lncRNA	40931-1_{1..2420}	n407412|NR_026867|lncRNA|Homosapiens||RefGeneNoncode|NR_026867||6.5511400|-0.2273455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407412|NR_026867|lncRNA|Homosapiens||RefGeneNoncode|NR_026867||6.5511400|-0.2273455	chr5	150309997	150312416	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28120_PI429285431	0.90095985	A	1.7507083	A	0.554881477385132	0	lncRNA	29743-1_{1..1709}	n325394|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323861|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323861|-1.1969100|-0.3343581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325394|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323861|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323861|-1.1969100|-0.3343581	chr2	 19521461	 19523169	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30143_PI429285431	3.6526308	P	4.173704	P	0.696853261245611	0	lncRNA	31917-1_{1..326}	n334791|AJ230638|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245073|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245073|1.8879100|-0.1527993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334791|AJ230638|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245073|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245073|1.8879100|-0.1527993	chr14	106329999	106330324	-	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106859077	inter
CUST_23848_PI429285431	2.9900756	A	2.9613788	A	1.02009025228186	0	lncRNA	25411-1_{1..453}	lnc-ANKRD42-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD42-2:2	chr11	 83015966	 83016418	+	lnc-ANKRD42-2	lnc-ANKRD42-2:2	ENSG00000255234.1	RP11-727A23.10	NA	NA	NA	inter
CUST_26836_PI429285431	4.263609	P	4.0804906	P	1.13533527372895	0	lncRNA	28350-1_{1..476}	n323907|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055791|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055791|-0.8934860|-0.1380641	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323907|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055791|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055791|-0.8934860|-0.1380641	chrX	 13264420	 13264895	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46557_PI429285431	1.3861394	A	1.3881348	A	0.99861785016603	0	lncRNA	50742-1_{1..606}	"gi|341915734|ref|XR_109225.2| PREDICTED: Homo sapiens NR2F2 antisense RNA 1 (NR2F2-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|341915734|ref|XR_109225.2| PREDICTED: Homo sapiens NR2F2 antisense RNA 1 (NR2F2-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_109225.2	NA	NA	NA	NA	NA	Unknown
CUST_46334_PI429285431	4.580541	P	4.690374	P	0.926695325836192	0	lncRNA	50560-1_{1..1311}	"gi|375163498|ref|NR_046320.1| Homo sapiens glutathione peroxidase 2 (gastrointestinal) (GPX2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375163498|ref|NR_046320.1| Homo sapiens glutathione peroxidase 2 (gastrointestinal) (GPX2), transcript variant 2, non-coding RNA"	Chr14	 65405870	 65407180	-	2877	NR_046320.1	NA	NA	NA	NA	NA	inter
CUST_8942_PI429285431	0.9109175	A	0.9008202	A	1.00702346467225	0	lncRNA	10476-1_{1..639}	lnc-KDM6A-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KDM6A-2:3	chrX	 45489318	 45489956	+	lnc-KDM6A-2	lnc-KDM6A-2:3	ENSG00000229563	XLOC_007966	NA	NA	NA	inter
CUST_16829_PI429285431	0.92307246	A	0.9026382	A	1.01426473371249	0	lncRNA	18535-2_{3001..3905}	lnc-GPR65-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR65-1:1	chr14	 88565843	 88566747	+	lnc-GPR65-1	lnc-GPR65-1:1	XLOC_010897	linc-SPATA7-3	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10"	NA	inter
CUST_37954_PI429285431	3.6087847	P	3.7126477	P	0.930538018480664	0	lncRNA	39044-1_{1..637}	n346502|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2052|NULL|-1.3110400|-0.1459678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346502|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2052|NULL|-1.3110400|-0.1459678	chr2	232371882	232372518	-	NA	NA	NA	NA	NMUR1	NA	chr2:232387871-232389086	inter
CUST_17765_PI429285431	1.439553	A	3.255752	P	0.283968143983143	0	lncRNA	19497-1_{1..297}	lnc-OR4N4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR4N4-2:1	chr15	 22512393	 22512689	+	lnc-OR4N4-2	lnc-OR4N4-2:1	XLOC_011165	linc-GOLGA6L1-1	NA	NA	NA	inter
CUST_19660_PI429285431	2.3830826	A	1.8022804	A	1.49568067973393	0	lncRNA	21316-1_{1..882}	lnc-SMARCC2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMARCC2-3:2	chr12	 56522303	 56523184	-	lnc-SMARCC2-3	lnc-SMARCC2-3:2	ENSG00000258317.1	RP11-603J24.5	ESYT1	"hg19_refFlat_ESYT1:range=chr12:56522104-565376465'pad=0,hg19_refFlat_ESYT1:range=chr12:56522104-565376465'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.80;hg19_refFlat_ZC3H10:range=chr12:56514347-565156515'pad=0,hg19_refFlat_ZC3H10:range=chr12:56514347-565156515'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50chr12:56521986-56532638"	NA	inner
CUST_51369_PI429285431	5.8799467	P	5.5242867	P	1.27957082179906	0	lncRNA	54965-1_{1..409}	hg19_lincRNAsTranscripts_TCONS_l2_00008801 range=chr15:85788835-85790478 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008801 range=chr15:85788835-85790478 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 85788835	 85789243	+	NA	NA	NA	NA	GOLGA6L3	NA	chr15:85783641-85790401	inter
CUST_49976_PI429285431	4.9210434	P	5.1143365	P	0.874607060426459	0	lncRNA	53719-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026267 range=chr7:149731355-149745413 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026267 range=chr7:149731355-149745413 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	149731355	149734354	+	NA	NA	NA	NA	NA	"hg19_refFlat_DPP6:range=chr7:153749906-1546841905'pad=0,hg19_refFlat_DPP6:range=chr7:153749906-1546841905'pad=0 3'pad=0 strand=+ repeatMasking=none,-114.10"	NA	inter
CUST_471_PI429285431	4.7907853	P	4.712111	P	1.05604718729854	0	lncRNA	462-1_{1..810}	"transcript_id ""ENST00000448643.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448643.1"" | genecode_v17"	chr1	166356964	166357773	-	ENSG00000225325.1	ENST00000448643.1	RP11-479J7.1	RP11-479J7.1-001	NA	NA	NA	inter
CUST_7946_PI429285431	1.4839839	A	1.7830358	A	0.812786362006525	0	lncRNA	9557-1_{1..2843}	lnc-RHOG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RHOG-1:1	chr11	  3841711	  3844553	-	lnc-RHOG-1	lnc-RHOG-1:1	ENSG00000249390	ENST00000502872	PGAP2	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PGAP2:range=chr11:3819074-38466885'pad=0,hg19_refFlat_PGAP2:range=chr11:3819074-38466885'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_PGAP2:range=chr11:3832490-38466885'pad=0,hg19_refFlat_PGAP2:range=chr11:3832490-38466885'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.10chr11:3831711-3847582"	NA	inner
CUST_16255_PI429285431	4.285888	P	5.571973	P	0.410062295037119	0	lncRNA	17959-1_{1..660}	lnc-NRXN1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NRXN1-2:3	chr2	 51569718	 51570377	-	lnc-NRXN1-2	lnc-NRXN1-2:3	XLOC_002094	linc-NRXN1-5	NA	NA	NA	inter
LNCA_21_P0006437	0.9219929	A	0.9066123	A	1.01071805068389	0	lncRNA	ENST00000446370	NA	NA	NA	NA	XLOC_008089	NA	ENST00000446370	THC2656423	NA	"BROAD Institute lincRNA (XLOC_008089), lincRNA [TCONS_00017027]"	chrX:152878315-152878374	hs|Xq28	Agilent_HUMAN_G3V2	ENST00000446370	ENST00000446370	chrX	152878315	152878374	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014883	0.9219109	A	0.9067562	A	1.01055980287225	0	lncRNA	XR_132797	XR_132797	XR_132797	NA	Hs.677503	LOC100507664	uncharacterized LOC100507664	NA	THC2485761	NA	"PREDICTED: Homo sapiens hypothetical LOC100507664 (LOC100507664), miscRNA [XR_132797]"	chr1:63074838-63074897	hs|1p31.3	Agilent_HUMAN_G3V2	XR_132797	XR_132797	chr1	 63074838	 63074897	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45509_PI429285431	3.8199785	P	3.4330413	P	1.30761442730876	0	lncRNA	49919-1_{1..1057}	"gi|212276217|ref|NR_024410.1| Homo sapiens uncharacterized LOC254312 (LOC254312), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|212276217|ref|NR_024410.1| Homo sapiens uncharacterized LOC254312 (LOC254312), transcript variant 2, non-coding RNA"	Chr10	 10976903	 10977959	-	254312	NR_024410.1	NA	NA	NA	NA	NA	inter
CUST_21658_PI429285431	7.886039	P	8.099171	P	0.862662411265299	0	lncRNA	23269-1_{1..3000}	lnc-CDK3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK3-1:1	chr17	 74001379	 74004378	+	lnc-CDK3-1	lnc-CDK3-1:1	ENSG00000261408.1	RP11-685I11.1	EVPL	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-53.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90chr17:74002927-74012079"	NA	inter
CUST_21442_PI429285431	0.9154771	A	0.91566163	A	0.999872101730452	0	lncRNA	23061-1_{1..432}	lnc-RPRM-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPRM-5:1	chr2	155554179	155554610	-	lnc-RPRM-5	lnc-RPRM-5:1	ENSG00000235949.1	AC061961.2	KCNJ3	NA	chr2:155555093-155564329	inter
CUST_22758_PI429285431	8.911638	P	9.176161	P	0.832473931073833	0	lncRNA	24341-1_{1..328}	lnc-TOP1MT-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TOP1MT-2:7	chr8	144363263	144363590	-	lnc-TOP1MT-2	lnc-TOP1MT-2:7	ENSG00000253716.1	RP13-582O9.5	GLI4	NA	chr8:144353263-144359101	inter
CUST_39666_PI429285431	0.9156511	A	0.9137448	A	1.00132221983318	0	lncRNA	40606-1_{1..1820}	n405295|NR_001434_4|lncRNA|Homosapiens||RefGeneNoncode|NR_001434_4||-1.1032100|-0.3697493	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405295|NR_001434_4|lncRNA|Homosapiens||RefGeneNoncode|NR_001434_4||-1.1032100|-0.3697493	chr6	  1150075	  1151894	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23668_PI429285431	1.5929226	A	1.5449972	A	1.03377727950431	0	lncRNA	25233-1_{1..576}	lnc-DNAJC24-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DNAJC24-1:1	chr11	 31336011	 31336586	+	lnc-DNAJC24-1	lnc-DNAJC24-1:1	ENSG00000255525.1	RP1-296L11.1	DCDC1	"hg19_refFlat_DCDC1:range=chr11:31284610-313498275'pad=0,hg19_refFlat_DCDC1:range=chr11:31284610-313498275'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50chr11:31326011-31346095"	NA	inner
CUST_28896_PI429285431	0.9266235	A	0.9258954	A	1.00050480783478	0	lncRNA	30612-1_{1..1666}	n326319|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098156|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098156|0.2258860|-0.3405718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326319|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098156|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098156|0.2258860|-0.3405718	chr1	175936281	175937946	+	NA	NA	NA	NA	RFWD2	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-28.87;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10chr1:175926281-175956088"	NA	inner
CUST_41396_PI429285431	1.4344704	A	1.0476936	A	1.30746905376202	0	lncRNA	42508-1_{1..124}	ENST00000580097 ncrna:miRNA chromosome:GRCh37:18:7840935:7841058:1 gene:ENSG00000263827 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580097 ncrna:miRNA chromosome:GRCh37:18:7840935:7841058:1 gene:ENSG00000263827 gene_biotype:miRNA transcript_biotype:miRNA	chr18	  7840935	  7841058	+	ENSG00000263827	ENST00000580097	NA	NA	PTPRM	NA	chr18:7830935-7851058	inner
CUST_39616_PI429285431	3.0958114	P	4.0178065	P	0.527778651374532	0	lncRNA	40556-1_{1..3000}	n387699|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011lrd.1||1.1037000|-0.3888164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n387699|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011lrd.1||1.1037000|-0.3888164	chr9	 46687565	 46690564	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1136_PI429285431	0.9054592	A	0.90137535	A	1.00283471935342	0	lncRNA	1125-1_{1..774}	"transcript_id ""ENST00000413247.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413247.1"" | genecode_v17"	chr2	151485411	151486184	+	ENSG00000224048.1	ENST00000413247.1	AC104777.4	AC104777.4-003	NA	NA	NA	inter
CUST_14934_PI429285431	0.9232444	A	0.91053045	A	1.00885158421629	0	lncRNA	16597-1_{1..1516}	lnc-FOXA2-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXA2-3:3	chr20	 22504591	 22506106	-	lnc-FOXA2-3	lnc-FOXA2-3:3	XLOC_013683	linc-NKX2-2-5	NA	NA	NA	inter
CUST_45727_PI429285431	0.91034317	A	0.90372336	A	1.00459904593538	0	lncRNA	50085-10_{27001..30000}	"gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	Chr11	  2656558	  2659557	-	10984	NR_002728.3	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.02;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0,hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_36932_PI429285431	10.594797	P	10.329948	P	1.20151028660186	0	lncRNA	38087-1_{1..529}	n345403|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_952|NULL|-1.2929300|-0.2565117	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345403|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_952|NULL|-1.2929300|-0.2565117	chr21	 44565300	 44565828	+	NA	NA	NA	NA	LOC100288336	NA	chr21:44573864-44581451	inter
CUST_8967_PI429285431	4.4862633	P	4.908307	P	0.746366583465348	0	lncRNA	10500-1_{1..632}	lnc-ZNF382-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF382-1:1	chr19	 37130606	 37131237	+	lnc-ZNF382-1	lnc-ZNF382-1:1	ENSG00000232819	ENST00000429170	ZNF461	"hg19_refFlat_ZNF461:range=chr19:37129555-371556085'pad=0,hg19_refFlat_ZNF461:range=chr19:37129555-371556085'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF124:range=chr1:247319868-2473351795'pad=0,hg19_refFlat_ZNF124:range=chr1:247319868-2473351795'pad=0 3'pad=0 strand=- repeatMasking=none,-59.20;hg19_refFlat_ZNF699:range=chr19:9406151-94157955'pad=0,hg19_refFlat_ZNF699:range=chr19:9406151-94157955'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF136:range=chr19:12274019-122988165'pad=0,hg19_refFlat_ZNF136:range=chr19:12274019-122988165'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.50;hg19_refFlat_ZNF354B:range=chr5:178288049-1783112925'pad=0,hg19_refFlat_ZNF354B:range=chr5:178288049-1783112925'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20chr19:37128283-37140950"	NA	inner
CUST_35179_PI429285431	0.90119696	A	0.9054241	A	0.997074258176222	0	lncRNA	36581-1_{1..3000}	n342158|AK022993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4645|NULL|1.0138400|-0.3161944	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342158|AK022993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4645|NULL|1.0138400|-0.3161944	chr6	155574273	155577272	-	NA	NA	NA	NA	TIAM2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TIAM2:range=chr6:155561721-1555782555'pad=0,hg19_refFlat_TIAM2:range=chr6:155561721-1555782555'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TIAM2:range=chr6:155450358-1555782555'pad=0,hg19_refFlat_TIAM2:range=chr6:155450358-1555782555'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60chr6:155564273-155578857"	NA	inner
CUST_11663_PI429285431	4.1194663	P	4.3091574	P	0.876793434235859	0	lncRNA	13240-1_{1..361}	lnc-CDH8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH8-1:1	chr16	 61264244	 61264604	-	lnc-CDH8-1	lnc-CDH8-1:1	XLOC_011974	linc-GOT2-5	NA	NA	NA	inter
CUST_21629_PI429285431	1.8782725	A	1.6399636	A	1.17960913506816	0	lncRNA	23241-1_{1..610}	lnc-MANBA-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MANBA-1:2	chr4	103352219	103352828	-	lnc-MANBA-1	lnc-MANBA-1:2	ENSG00000248161.1	RP11-499E18.1	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-96.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80"	NA	inter
LNCA_21_P0004879	0.9265349	A	0.9149994	A	1.00802785107415	0	lncRNA	TCONS_00011810	NA	NA	NA	NA	XLOC_005283	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005283), lincRNA [TCONS_00011810]"	chr6:39920892-39920951	hs|6p21.2	Agilent_HUMAN_G3V2	TCONS_00011810	TCONS_00011810	chr6	 39920892	 39920951	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010075	2.0247552	A	2.5468175	A	0.696375668046449	0	lncRNA	TCONS_00028474	NA	NA	NA	NA	XLOC_013850	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013850), lincRNA [TCONS_00028474]"	chr20:62771562-62771503	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028474	TCONS_00028474	chr20	 62771503	 62771562	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21201_PI429285431	2.2156901	A	2.4708328	A	0.837904251697584	0	lncRNA	22826-1_{1..425}	lnc-OSBP2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OSBP2-1:3	chr22	 31328198	 31328622	+	lnc-OSBP2-1	lnc-OSBP2-1:3	ENSG00000235989.2	MORC2-AS1	MORC2	"hg19_refFlat_MORC2:range=chr22:31322790-313464025'pad=0,hg19_refFlat_MORC2:range=chr22:31322790-313464025'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30chr22:31322600-31338436"	NA	inner
CUST_11567_PI429285431	2.614346	A	2.8874495	P	0.827537445805495	0	lncRNA	13144-1_{1..1076}	lnc-CRYGS-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYGS-1:3	chr3	186210470	186211545	-	lnc-CRYGS-1	lnc-CRYGS-1:3	XLOC_003358	linc-DGKG	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-25.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00"	NA	inter
CUST_1195_PI429285431	0.91758776	A	0.9153985	A	1.00151863135099	0	lncRNA	1186-1_{1..625}	"transcript_id ""ENST00000450848.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450848.1"" | genecode_v17"	chr2	195208993	195209617	+	ENSG00000225539.1	ENST00000450848.1	AC018799.1	AC018799.1-003	NA	NA	NA	inter
CUST_8579_PI429285431	0.91458774	A	0.9145788	A	1.00000619675499	0	lncRNA	10136-1_{1..1950}	lnc-CYR61-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CYR61-3:1	chr1	 85864140	 85866089	+	lnc-CYR61-3	lnc-CYR61-3:1	ENSG00000223653	RP11-131L23.1	DDAH1	NA	chr1:85854140-85875646	inner
CUST_14476_PI429285431	8.350132	P	8.073476	P	1.21138378045627	0	lncRNA	16141-1_{1..808}	lnc-RWDD3-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RWDD3-7:3	chr1	 96488089	 96488896	+	lnc-RWDD3-7	lnc-RWDD3-7:3	XLOC_000312	linc-PTBP2-2	NA	NA	NA	inter
CUST_7212_PI429285431	0.90294963	A	0.8998464	A	1.00215331017473	0	lncRNA	7643-1_{1..300}	"transcript_id ""ENST00000410927.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410927.1"" | genecode_v17"	chr4	178102596	178102895	+	ENSG00000222859.1	ENST00000410927.1	RN7SKP136	RN7SKP136-201	NA	NA	NA	inter
CUST_7108_PI429285431	2.4306998	A	2.6359854	A	0.867366963732277	0	lncRNA	7044-1_{1..512}	"transcript_id ""ENST00000446495.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446495.1"" | genecode_v17"	chrX	115826878	115827389	-	ENSG00000230159.1	ENST00000446495.1	RP11-232D9.3	RP11-232D9.3-001	NA	NA	NA	inter
CUST_18211_PI429285431	3.8005931	P	3.8785315	P	0.947410522143491	0	lncRNA	19946-1_{1..599}	lnc-MYC-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYC-2:7	chr8	128902835	128903433	+	lnc-MYC-2	lnc-MYC-2:7	ENSG00000249859	PVT1	NA	NA	NA	inter
CUST_43671_PI429285431	2.1713808	A	1.5653387	A	1.52207779669889	0	lncRNA	48426-1_{1..3000}	"gi|311893399|ref|NR_037167.1| Homo sapiens quinone oxidoreductase-like protein 2 pseudogene (LOC730102), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|311893399|ref|NR_037167.1| Homo sapiens quinone oxidoreductase-like protein 2 pseudogene (LOC730102), non-coding RNA"	Chr1	177975271	177978270	-	730102	NR_037167.1	NA	NA	NA	NA	NA	inter
CUST_14311_PI429285431	1.1546068	A	1.0079054	A	1.10703543349802	0	lncRNA	15970-1_{1..3000}	lnc-ADAT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAT1-1:1	chr16	 75616487	 75619486	-	lnc-ADAT1-1	lnc-ADAT1-1:1	XLOC_012011	linc-TMEM231	ADAT1	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20chr16:75632247-75632358"	NA	inter
CUST_23084_PI429285431	2.467813	A	2.5066833	A	0.973416881560024	0	lncRNA	24656-1_{1..2274}	lnc-C2orf54-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C2orf54-1:1	chr2	241906744	241909017	-	lnc-C2orf54-1	lnc-C2orf54-1:1	ENSG00000233392.1	AC104809.4	LOC728763	NA	chr2:241896744-241908771	inter
CUST_48248_PI429285431	2.9203904	A	2.3905163	A	1.44380319331925	0	lncRNA	52110-1_{1..367}	hg19_lincRNAsTranscripts_TCONS_l2_00000965 range=chr1:708328-714035 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000965 range=chr1:708328-714035 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	   708328	   708694	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37347_PI429285431	0.9382747	A	1.0644376	A	0.916265179964773	0	lncRNA	38451-1_{1..1121}	n345790|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1339|NULL|-1.2793200|-0.2263932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345790|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1339|NULL|-1.2793200|-0.2263932	chr5	142095772	142096892	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3181_PI429285431	15.672344	P	16.06634	P	0.761018800408898	0	lncRNA	3160-1_{1..343}	"transcript_id ""ENST00000522560.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522560.1"" | genecode_v17"	chr8	 74281005	 74281347	-	ENSG00000253235.1	ENST00000522560.1	RP11-434I12.4	RP11-434I12.4-001	NA	NA	NA	inter
LNCA_19_P00318363	3.799462	P	4.9203043	P	0.459825283513446	0	lncRNA	TCONS_00003637	NA	NA	NA	NA	XLOC_001429	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001429), lincRNA [TCONS_00003637]"	chr2:37716665-37716724	hs|2p22.2	Agilent_HUMAN_G3V2	TCONS_00003637	TCONS_00003637	chr2	 37716665	 37716724	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_964_PI429285431	3.3834202	P	2.7426996	A	1.55910771088536	0	lncRNA	953-1_{1..551}	"transcript_id ""ENST00000600957.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600957.1"" | genecode_v17"	chr2	 98088548	 98089098	-	ENSG00000230606.5	ENST00000600957.1	AC159540.1	AC159540.1-012	NA	NA	NA	inter
CUST_39741_PI429285431	3.2242901	P	3.645073	P	0.747019133220632	0	lncRNA	40666-1_{1..1380}	n405837|NR_003063|lncRNA|Homosapiens||RefGeneNoncode|NR_003063||11.4078000|-0.0956004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405837|NR_003063|lncRNA|Homosapiens||RefGeneNoncode|NR_003063||11.4078000|-0.0956004	chr2	220117964	220119343	+	NA	NA	NA	NA	GLB1L	NA	chr2:220107964-220110131	inter
CUST_43816_PI429285431	8.574393	P	8.960911	P	0.764973671616321	0	lncRNA	48540-1_{1..2600}	"gi|388596710|ref|NR_049782.1| Homo sapiens sorting nexin 17 (SNX17), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388596710|ref|NR_049782.1| Homo sapiens sorting nexin 17 (SNX17), transcript variant 5, non-coding RNA"	Chr2	 27593363	 27595962	+	9784	NR_049782.1	NA	NA	NA	NA	NA	inter
CUST_45721_PI429285431	7.320867	P	7.494781	P	0.886434538565657	0	lncRNA	50085-4_{9001..12000}	"gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	Chr11	  2638558	  2641557	-	10984	NR_002728.3	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.02;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0,hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_18710_PI429285431	2.747161	A	2.185276	A	1.47619673050864	0	lncRNA	20408-1_{1..1017}	lnc-ANGPT2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ANGPT2-2:1	chr8	  6264603	  6265619	-	lnc-ANGPT2-2	lnc-ANGPT2-2:1	ENSG00000246089	RP11-115C21.2	MCPH1	NA	chr8:6264113-6274663	inner
CUST_46862_PI429285431	8.474003	P	7.172982	P	2.46403201330417	0	lncRNA	50992-2_{3001..3962}	"gi|339276051|ref|NR_040116.1| Homo sapiens N-ethylmaleimide-sensitive factor (NSF), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|339276051|ref|NR_040116.1| Homo sapiens N-ethylmaleimide-sensitive factor (NSF), transcript variant 2, non-coding RNA"	Chr17	 44671035	 44671996	+	4905	NR_040116.1	NA	NA	NA	NA	NA	inter
CUST_21278_PI429285431	4.668269	P	4.753392	P	0.942704160266103	0	lncRNA	22903-1_{1..326}	lnc-TCIRG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCIRG1-1:1	chr11	 67820826	 67821151	+	lnc-TCIRG1-1	lnc-TCIRG1-1:1	ENSG00000255031.1	RP11-802E16.3	CHKA	NA	chr11:67820326-67830852	inner
CUST_2634_PI429285431	2.995185	P	2.525905	A	1.38441837957439	0	lncRNA	2621-1_{1..397}	"transcript_id ""ENST00000579339.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579339.1"" | genecode_v17"	chr6	135818939	135819335	+	ENSG00000231028.4	ENST00000579339.1	LINC00271	LINC00271-004	AHI1	NA	chr6:135808939-135818903	inter
CUST_50768_PI429285431	7.380125	P	7.7081747	P	0.796612652973106	0	lncRNA	54429-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00004571 range=chr11:65266513-65273999 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004571 range=chr11:65266513-65273999 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65269513	 65272512	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24078_PI429285431	2.363375	A	1.9455404	A	1.33592091089516	0	lncRNA	25628-1_{1..376}	lnc-CCRN4L-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCRN4L-4:5	chr4	139095626	139096001	+	lnc-CCRN4L-4	lnc-CCRN4L-4:5	ENSG00000250033.1	SLC7A11-AS1	SLC7A11	NA	chr4:139085626-139105924	inter
CUST_15633_PI429285431	1.4616538	A	0.9069709	A	1.46884574994858	0	lncRNA	17321-1_{1..322}	lnc-ELOVL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELOVL1-1:1	chr1	 43824221	 43824542	-	lnc-ELOVL1-1	lnc-ELOVL1-1:1	XLOC_000808	linc-C1orf210	MPL	NA	chr1:43814221-43820135	inter
CUST_24316_PI429285431	1.4700273	A	1.3460591	A	1.08972809207445	0	lncRNA	25868-1_{1..706}	lnc-ZNF124-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ZNF124-2:1	chr1	247405079	247405784	-	lnc-ZNF124-2	lnc-ZNF124-2:1	ENSG00000232347.1	RP11-488L18.8	NA	NA	NA	inter
CUST_1807_PI429285431	1.3045319	A	1.2026888	A	1.07314357054039	0	lncRNA	1794-1_{1..777}	"transcript_id ""ENST00000515230.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515230.1"" | genecode_v17"	chr4	 76326428	 76327204	+	ENSG00000250735.1	ENST00000515230.1	RP11-567N4.3	RP11-567N4.3-001	NA	NA	NA	inter
CUST_45580_PI429285431	1.102946	A	1.3821992	A	0.824017453189022	0	lncRNA	49974-1_{1..1331}	"gi|299829211|ref|NR_033891.1| Homo sapiens ankyrin repeat domain-containing protein 30B pseudogene (LOC338579), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299829211|ref|NR_033891.1| Homo sapiens ankyrin repeat domain-containing protein 30B pseudogene (LOC338579), non-coding RNA"	Chr10	 45650110	 45651440	+	338579	NR_033891.1	NA	NA	NA	NA	NA	inter
CUST_50010_PI429285431	0.9052562	A	0.9024728	A	1.00193116817039	0	lncRNA	53747-1_{1..338}	hg19_lincRNAsTranscripts_TCONS_l2_00027764 range=chr8:55696076-55750152 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027764 range=chr8:55696076-55750152 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 55696076	 55696413	+	NA	NA	NA	NA	LOC100287651	NA	chr8:55686076-55760152	inter
CUST_17409_PI429285431	3.2503679	A	3.3508582	P	0.932715954091848	0	lncRNA	19133-1_{1..1667}	lnc-ING1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ING1-1:3	chr13	111490563	111492229	+	lnc-ING1-1	lnc-ING1-1:3	XLOC_010500	linc-ARHGEF7-2	NA	NA	NA	inter
CUST_6365_PI429285431	1.2255715	A	0.92485833	A	1.23175315759617	0	lncRNA	6291-1_{1..856}	"transcript_id ""ENST00000597169.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597169.1"" | genecode_v17"	chr19	 17502238	 17503093	-	ENSG00000269720.1	ENST00000597169.1	CTD-2521M24.5	CTD-2521M24.5-001	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	inter
CUST_28975_PI429285431	3.2724533	A	2.6021955	A	1.59135730706163	0	lncRNA	30697-1_{1..3000}	n326457|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000036739|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000036739|2.7430600|-0.3297327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326457|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000036739|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000036739|2.7430600|-0.3297327	chr1	120840136	120843135	+	NA	NA	NA	NA	FAM72B	NA	chr1:120839005-120855681	inner
CUST_7085_PI429285431	1.8302726	A	2.20405	A	0.771759156584715	0	lncRNA	7020-1_{1..827}	"transcript_id ""ENST00000602495.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602495.1"" | genecode_v17"	chrX	 73048973	 73049799	-	ENSG00000229807.5	ENST00000602495.1	XIST	XIST-009	NA	NA	NA	inter
CUST_10487_PI429285431	3.1447532	P	3.1758397	P	0.978682969517287	0	lncRNA	12015-1_{1..300}	lnc-SAFB2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SAFB2-2:1	chr19	  5487594	  5487893	-	lnc-SAFB2-2	lnc-SAFB2-2:1	XLOC_013206	linc-PTPRS-1	NA	NA	NA	inter
CUST_24703_PI429285431	0.9690415	A	1.0786769	A	0.926822260172293	0	lncRNA	26249-1_{1..291}	lnc-HRASLS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HRASLS-2:1	chr3	192239078	192239368	+	lnc-HRASLS-2	lnc-HRASLS-2:1	ENSG00000226709.1	FGF12-AS3	FGF12	NA	chr3:192229078-192249187	inner
CUST_35928_PI429285431	11.144891	P	11.7052965	P	0.678111539323885	0	lncRNA	37294-1_{1..3000}	n344569|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_117|NULL|-1.3364000|-0.2814666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344569|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_117|NULL|-1.3364000|-0.2814666	chr21	 35303857	 35306856	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47026_PI429285431	1.2376807	A	0.9110865	A	1.25404941698363	0	lncRNA	51117-1_{1..3000}	"gi|384871622|ref|NR_047593.1| Homo sapiens ATPase, aminophospholipid transporter, class I, type 8B, member 3 (ATP8B3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384871622|ref|NR_047593.1| Homo sapiens ATPase, aminophospholipid transporter, class I, type 8B, member 3 (ATP8B3), transcript variant 3, non-coding RNA"	Chr19	  1782074	  1785073	-	148229	NR_047593.1	NA	NA	NA	NA	NA	inter
CUST_8284_PI429285431	0.9112293	A	0.9211294	A	0.993161264908392	0	lncRNA	9869-1_{1..1812}	lnc-PDSS2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDSS2-2:1	chr6	107836099	107837910	-	lnc-PDSS2-2	lnc-PDSS2-2:1	ENSG00000251083	ENST00000514173	SOBP	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-28.61;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50chr6:107826099-107847681"	NA	inner
CUST_34963_PI429285431	4.0891876	P	2.8006356	A	2.44282751448139	0	lncRNA	36380-1_{1..1962}	n341883|AL137364|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4363|NULL|-1.3641100|-0.4300459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341883|AL137364|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4363|NULL|-1.3641100|-0.4300459	chr12	 31535159	 31537120	-	NA	NA	NA	NA	DENND5B	NA	chr12:31535157-31547109	inner
CUST_11869_PI429285431	1.1220214	A	0.9211732	A	1.14937390484624	0	lncRNA	13448-1_{1..607}	lnc-MINA-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MINA-2:1	chr3	 97956121	 97956727	-	lnc-MINA-2	lnc-MINA-2:1	XLOC_003187	linc-GABRR3-2	OR5H6	NA	chr3:97946121-97966219	inter
LNCA_21_P0010002	0.92900884	A	0.9238795	A	1.00356171544662	0	lncRNA	TCONS_00028313	NA	NA	NA	NA	XLOC_013647	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013647), lincRNA [TCONS_00028313]"	chr20:7234799-7234740	hs|20p12.3	Agilent_HUMAN_G3V2	TCONS_00028313	TCONS_00028313	chr20	  7234740	  7234799	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48677_PI429285431	0.90916294	A	0.9007607	A	1.00584098136195	0	lncRNA	52520-1_{1..362}	hg19_lincRNAsTranscripts_TCONS_l2_00013847 range=chr2:98306741-98317817 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013847 range=chr2:98306741-98317817 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 98306741	 98307102	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37708_PI429285431	6.5330563	P	6.950246	P	0.748881990229876	0	lncRNA	38802-1_{1..727}	n346204|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1754|NULL|-1.3644300|-0.2052682	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346204|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1754|NULL|-1.3644300|-0.2052682	chr2	 43199834	 43200560	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51605_PI429285431	2.018598	A	0.9256404	A	2.13310886986618	0	lncRNA	55171-1_{1..1236}	hg19_lincRNAsTranscripts_TCONS_l2_00010688 range=chr17:29335584-29352048 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010688 range=chr17:29335584-29352048 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 29335584	 29336819	+	NA	NA	NA	NA	RNF135	NA	chr17:29325584-29326929	inter
CUST_49870_PI429285431	6.4345	P	6.586548	P	0.899971986269235	0	lncRNA	53622-1_{1..1755}	hg19_lincRNAsTranscripts_TCONS_l2_00026037 range=chr7:76589137-76632736 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026037 range=chr7:76589137-76632736 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 76589137	 76590891	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2782_PI429285431	0.90884763	A	0.8996202	A	1.00641646496375	0	lncRNA	2766-1_{1..362}	"transcript_id ""ENST00000414127.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414127.1"" | genecode_v17"	chr7	 25360921	 25361282	-	ENSG00000233824.1	ENST00000414127.1	AC003985.1	AC003985.1-001	NA	NA	NA	inter
CUST_7952_PI429285431	8.609812	P	7.6030564	P	2.00938721142912	0	lncRNA	9564-1_{1..242}	lnc-SERPINC1-1:23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:23	chr1	173836129	173836370	-	lnc-SERPINC1-1	lnc-SERPINC1-1:23	ENSG00000234741	GAS5	DARS2	NA	chr1:173826129-173827682	inter
CUST_29714_PI429285431	1.0420752	A	0.911061	A	1.09506324910858	0	lncRNA	31476-1_{1..1050}	n333382|BC005221|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086489|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086489|3.5439700|-0.3965336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333382|BC005221|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086489|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086489|3.5439700|-0.3965336	chr10	 91465046	 91466095	+	NA	NA	NA	NA	KIF20B	NA	chr10:91461367-91498964	inner
LNCA_21_P0004709	5.1149187	P	5.6166058	P	0.706280367731306	0	lncRNA	ENST00000434596	NA	NA	NA	NA	XLOC_005544	NA	ENST00000434596	THC2778479	NA	"BROAD Institute lincRNA (XLOC_005544), lincRNA [TCONS_00011417]"	chr6:168641336-168641395	hs|6q27	Agilent_HUMAN_G3V2	ENST00000434596	ENST00000434596	chr6	168641336	168641395	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7404_PI429285431	1.9795567	A	1.8510137	A	1.09318911501691	0	lncRNA	9048-2_{3001..4978}	lnc-CST7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CST7-2:1	chr20	 25001990	 25003967	+	lnc-CST7-2	lnc-CST7-2:1	ENSG00000249718	ENST00000506743	ACSS1	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ACSS1:range=chr20:24988398-250130725'pad=0,hg19_refFlat_ACSS1:range=chr20:24988398-250130725'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_ACSS1:range=chr20:24988398-250387385'pad=0,hg19_refFlat_ACSS1:range=chr20:24988398-250387385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.60;hg19_refFlat_ACSS1:range=chr20:24987496-250387385'pad=0,hg19_refFlat_ACSS1:range=chr20:24987496-250387385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90chr20:24988990-25012860"	NA	inner
LNCA_21_P0014627	3.0853026	P	2.8939388	A	1.14184260578674	0	lncRNA	XR_110765	XR_110765	XR_110765	NA	Hs.649859	LOC100510007	uncharacterized LOC100510007	NA	THC2617450	NA	"PREDICTED: Homo sapiens hypothetical LOC100510007 (LOC100510007), miscRNA [XR_110765]"	chr7:150475289-150475230	hs|7q36.1	Agilent_HUMAN_G3V2	XR_110765	XR_110765	chr7	150475230	150475289	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19629_PI429285431	1.1073396	A	1.0505064	A	1.0401799971311	0	lncRNA	21285-1_{1..279}	lnc-SH3KBP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SH3KBP1-1:2	chrX	 19933057	 19933335	-	lnc-SH3KBP1-1	lnc-SH3KBP1-1:2	ENSG00000242500.1	RP11-24O6.2	CXorf23	NA	chrX:19930978-19943153	inner
CUST_40011_PI429285431	3.198101	P	4.4470887	P	0.420743328263135	0	lncRNA	40872-1_{1..2232}	n407159|NR_026575|lncRNA|Homosapiens||RefGeneNoncode|NR_026575||9.5071400|-0.1615799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407159|NR_026575|lncRNA|Homosapiens||RefGeneNoncode|NR_026575||9.5071400|-0.1615799	chr4	166198943	166201174	-	NA	NA	NA	NA	KLHL2	NA	chr4:166188943-166211175	inter
CUST_37421_PI429285431	8.198643	P	7.3189425	P	1.83999328344421	0	lncRNA	38527-1_{1..1014}	n345876|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1425|NULL|-1.5731300|-0.2651515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345876|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1425|NULL|-1.5731300|-0.2651515	chr9	 33624213	 33625226	-	NA	NA	NA	NA	NA	"hg19_refFlat_ANXA2:range=chr15:60639829-606901125'pad=0,hg19_refFlat_ANXA2:range=chr15:60639829-606901125'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_ANXA2:range=chr15:60639829-606782745'pad=0,hg19_refFlat_ANXA2:range=chr15:60639829-606782745'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50"	NA	inter
CUST_33525_PI429285431	0.9171699	A	0.9228103	A	0.996098005285636	0	lncRNA	35093-1_{1..1006}	n340263|BC038562|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2724|NULL|-1.0481600|-0.3222738	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340263|BC038562|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2724|NULL|-1.0481600|-0.3222738	chr4	157507130	157508135	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28737_PI429285431	12.626605	P	12.707044	P	0.945769813113875	0	lncRNA	30437-1_{1..407}	n326130|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046393|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046393|-0.9379840|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326130|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046393|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046393|-0.9379840|-1.0000000	chr10	   968965	   969371	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_8863_PI429285431	3.6794279	P	3.8658679	P	0.878771508120844	0	lncRNA	10402-1_{1..581}	lnc-SRD5A1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SRD5A1-1:3	chr5	  6585887	  6586467	+	lnc-SRD5A1-1	lnc-SRD5A1-1:3	ENSG00000250056	CTD-2195M18.1	NA	NA	NA	inter
CUST_10986_PI429285431	6.3556147	P	6.2684364	P	1.06229046488811	0	lncRNA	12530-1_{1..1809}	lnc-IER5L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IER5L-1:1	chr9	132102945	132104753	-	lnc-IER5L-1	lnc-IER5L-1:1	XLOC_007865	linc-IER5L-3	NA	NA	NA	inter
CUST_36323_PI429285431	1.6342746	A	1.0798702	A	1.46856222914326	0	lncRNA	37554-1_{1..799}	n344849|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_398|NULL|-1.3043200|-0.3862340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344849|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_398|NULL|-1.3043200|-0.3862340	chr5	127412450	127413248	+	NA	NA	NA	NA	SLC12A2	"hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50chr5:127419483-127423364"	NA	inter
CUST_41290_PI429285431	0.9208115	A	0.92769945	A	0.995237016032665	0	lncRNA	42279-1_{1..98}	ENST00000385253 ncrna:miRNA chromosome:GRCh37:4:110409854:110409951:1 gene:ENSG00000207988 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385253 ncrna:miRNA chromosome:GRCh37:4:110409854:110409951:1 gene:ENSG00000207988 gene_biotype:miRNA transcript_biotype:miRNA	chr4	110409854	110409951	+	ENSG00000207988	ENST00000385253	NA	NA	SEC24B	NA	chr4:110399854-110419951	inner
CUST_44390_PI429285431	2.3985596	A	1.4122721	A	1.98108049388504	0	lncRNA	49009-1_{1..1659}	"gi|310119406|ref|XR_109830.1| PREDICTED: Homo sapiens TSSP3028 (LOC100131826), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119406|ref|XR_109830.1| PREDICTED: Homo sapiens TSSP3028 (LOC100131826), misc_RNA"	NA	NA	NA	NA	NA	XR_109830.1	NA	NA	NA	NA	NA	Unknown
CUST_10137_PI429285431	0.8918119	A	0.8901374	A	1.0011613487977	0	lncRNA	11659-1_{1..561}	lnc-LIMCH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LIMCH1-1:1	chr4	 41758968	 41759528	+	lnc-LIMCH1-1	lnc-LIMCH1-1:1	XLOC_003521	linc-TMEM33	PHOX2B	NA	chr4:41748968-41750987	inter
CUST_26262_PI429285431	0.92152524	A	0.92534626	A	0.99735497501931	0	lncRNA	27769-1_{1..716}	lnc-KCNMB4-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNMB4-1:4	chr12	 70904855	 70905570	+	lnc-KCNMB4-1	lnc-KCNMB4-1:4	ENSG00000258168.1	RP11-588H23.3	PTPRB	NA	chr12:70910630-70915002	inter
CUST_23817_PI429285431	0.9240413	A	1.2036455	A	0.823816998528367	0	lncRNA	25381-1_{1..3000}	lnc-H2BFM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-H2BFM-1:1	chrX	103197629	103200628	+	lnc-H2BFM-1	lnc-H2BFM-1:1	ENSG00000260831.1	GHc-362H12.3	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50"	NA	inter
CUST_41841_PI429285431	4.4632306	P	3.8497126	P	1.52998552094171	0	lncRNA	43467-1_{1..90}	ENST00000408492 ncrna:miRNA chromosome:GRCh37:10:100154975:100155064:-1 gene:ENSG00000221419 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408492 ncrna:miRNA chromosome:GRCh37:10:100154975:100155064:-1 gene:ENSG00000221419 gene_biotype:miRNA transcript_biotype:miRNA	chr10	100154975	100155064	-	ENSG00000221419	ENST00000408492	NA	NA	PYROXD2	NA	chr10:100144975-100165064	inner
CUST_37521_PI429285431	5.9458723	P	5.96466	P	0.987061786420853	0	lncRNA	38624-1_{1..262}	n345994|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1543|NULL|-1.3125800|-0.1164828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345994|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1543|NULL|-1.3125800|-0.1164828	chr3	192873760	192874021	+	NA	NA	NA	NA	NA	"hg19_refFlat_VEZF1:range=chr17:56051834-560654725'pad=0,hg19_refFlat_VEZF1:range=chr17:56051834-560654725'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40"	NA	inter
CUST_46772_PI429285431	5.682329	P	4.2501473	P	2.69854491509287	0	lncRNA	50921-2_{3001..4859}	"gi|147902149|ref|NR_003554.1| Homo sapiens ubiquitin specific peptidase 32 pseudogene 2 (USP32P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|147902149|ref|NR_003554.1| Homo sapiens ubiquitin specific peptidase 32 pseudogene 2 (USP32P2), non-coding RNA"	Chr17	 18417576	 18419434	-	220594	NR_003554.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10"	NA	inter
CUST_41964_PI429285431	3.8875113	P	4.1703377	P	0.821979090376296	0	lncRNA	43754-1_{1..74}	ENST00000581025 ncrna:miRNA chromosome:GRCh37:22:49937041:49937114:-1 gene:ENSG00000264139 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581025 ncrna:miRNA chromosome:GRCh37:22:49937041:49937114:-1 gene:ENSG00000264139 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 49937041	 49937114	-	ENSG00000264139	ENST00000581025	NA	NA	NA	NA	NA	inter
CUST_27892_PI429285431	0.9215022	A	1.0799555	A	0.895985133567495	0	lncRNA	29486-1_{1..298}	n325129|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331967|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331967|-1.3485200|-0.2975274	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325129|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331967|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331967|-1.3485200|-0.2975274	chr2	140298934	140299231	-	NA	NA	NA	NA	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90"	NA	inter
LNCA_19_P00801213	0.9300976	A	0.9130685	A	1.0118736109017	0	lncRNA	ENST00000547168	XR_110351	XR_110351	NA	NA	NA	0	ENST00000547168	THC2708277	NA	"PREDICTED: Homo sapiens hypothetical LOC100506577 (LOC100506577), miscRNA [XR_110351]"	chr12:41803439-41803380	hs|12q12	Agilent_HUMAN_G3V2	ENST00000547168	ENST00000547168	chr12	 41803380	 41803439	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23790_PI429285431	1.3478512	A	1.6718553	A	0.798849646192364	0	lncRNA	25355-1_{1..440}	lnc-NMNAT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NMNAT1-1:1	chr1	 10009696	 10010135	+	lnc-NMNAT1-1	lnc-NMNAT1-1:1	ENSG00000228150.1	RP11-84A14.4	LZIC	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr1:9999696-10002826"	NA	inner
CUST_43512_PI429285431	7.1063066	P	6.9922857	P	1.08224032258536	0	lncRNA	48299-1_{1..1715}	"gi|84872118|ref|NR_002830.1| Homo sapiens gem (nuclear organelle) associated protein 8 pseudogene 4 (GEMIN8P4), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|84872118|ref|NR_002830.1| Homo sapiens gem (nuclear organelle) associated protein 8 pseudogene 4 (GEMIN8P4), non-coding RNA"	NA	NA	NA	NA	NA	NR_002830.1	NA	NA	NA	NA	NA	Unknown
CUST_39767_PI429285431	7.933147	P	7.6736975	P	1.1970218608273	0	lncRNA	40685-1_{1..950}	n405969|NR_003251|lncRNA|Homosapiens||RefGeneNoncode|NR_003251||5.0084200|-0.3086842	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405969|NR_003251|lncRNA|Homosapiens||RefGeneNoncode|NR_003251||5.0084200|-0.3086842	chr10	121485608	121486557	+	NA	NA	NA	NA	INPP5F	NA	chr10:121485609-121561720	inner
LNCA_21_P0007668	3.247611	P	2.926785	A	1.24904547218013	0	lncRNA	TCONS_00020652	NA	NA	NA	NA	XLOC_009952	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009952), lincRNA [TCONS_00020652]"	chr12:130445544-130445603	hs|12q24.33	Agilent_HUMAN_G3V2	TCONS_00020652	TCONS_00020652	chr12	130445544	130445603	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7810_PI429285431	0.9681368	A	0.9228147	A	1.03191354139527	0	lncRNA	9434-1_{1..2805}	lnc-MPEG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MPEG1-1:1	chr11	 59051435	 59054239	-	lnc-MPEG1-1	lnc-MPEG1-1:1	ENSG00000214797	RP11-1036E20.9	OR5AN1	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60chr11:59054815-59061506"	NA	inter
CUST_21028_PI429285431	0.9049621	A	0.90120816	A	1.00260542115279	0	lncRNA	22656-1_{1..436}	lnc-ZMYM2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZMYM2-5:1	chr13	 20417551	 20417986	+	lnc-ZMYM2-5	lnc-ZMYM2-5:1	ENSG00000223576.1	RP11-61K9.2	ZMYM5	NA	chr13:20407551-20427812	inner
CUST_22712_PI429285431	3.2993946	P	1.1389786	A	4.47043741363194	0	lncRNA	24296-1_{1..2421}	lnc-NFAT5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-NFAT5-2:1	chr16	 69497747	 69500167	+	lnc-NFAT5-2	lnc-NFAT5-2:1	ENSG00000260108.1	RP11-140H17.1	CYB5B	NA	chr16:69487747-69500167	inner
LNCA_21_P0012882	0.9262365	A	0.90930015	A	1.01180856024442	0	lncRNA	XR_108578	XR_108578	XR_108578	NA	Hs.146092	LOC100506791	uncharacterized LOC100506791	ENST00000504989	THC2604966	NA	"PREDICTED: Homo sapiens hypothetical LOC100506791, transcript variant 1 (LOC100506791), miscRNA [XR_108578]"	chr5:1363768-1363709	hs|5p15.33	Agilent_HUMAN_G3V2	XR_108578	XR_108578	chr5	  1363709	  1363768	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37042_PI429285431	1.3664432	A	0.90904725	A	1.37306121843181	0	lncRNA	38180-1_{1..2602}	n345497|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1046|NULL|-1.3141600|-0.2598674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345497|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1046|NULL|-1.3141600|-0.2598674	chr2	 48752493	 48755094	+	NA	NA	NA	NA	STON1-GTF2A1L	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr2:48757064-48797278"	NA	inner
CUST_21107_PI429285431	0.9127916	A	0.9132966	A	0.999650021930435	0	lncRNA	22732-1_{1..555}	lnc-ANKRD56-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD56-3:1	chr4	 77679202	 77679756	-	lnc-ANKRD56-3	lnc-ANKRD56-3:1	ENSG00000233860.1	RP11-359D14.2	SHROOM3	NA	chr4:77669202-77689627	inner
CUST_41412_PI429285431	1.0726955	A	0.8945144	A	1.13145648448125	0	lncRNA	42546-1_{1..83}	ENST00000384883 ncrna:miRNA chromosome:GRCh37:19:54188263:54188345:1 gene:ENSG00000207615 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384883 ncrna:miRNA chromosome:GRCh37:19:54188263:54188345:1 gene:ENSG00000207615 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54188263	 54188345	+	ENSG00000207615	ENST00000384883	NA	NA	NA	NA	NA	inter
CUST_2146_PI429285431	0.91523635	A	0.92340446	A	0.994354294815364	0	lncRNA	2137-1_{1..339}	"transcript_id ""ENST00000508829.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508829.1"" | genecode_v17"	chr5	 43874469	 43874807	+	ENSG00000249276.1	ENST00000508829.1	RP11-8L21.1	RP11-8L21.1-001	NA	NA	NA	inter
CUST_5455_PI429285431	5.774012	P	6.6080027	P	0.560975356451513	0	lncRNA	5389-1_{1..730}	"transcript_id ""ENST00000570080.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000570080.1"" | genecode_v17"	chr16	 23464079	 23464808	+	ENSG00000260136.1	ENST00000570080.1	CTD-2270L9.4	CTD-2270L9.4-001	COG7	"hg19_refFlat_COG7:range=chr16:23400241-234643155'pad=0,hg19_refFlat_COG7:range=chr16:23400241-234643155'pad=0 3'pad=0 strand=- repeatMasking=none,-101.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.30chr16:23454079-23464512"	NA	inner
CUST_36830_PI429285431	0.96873784	A	2.446495	A	0.359046558672877	0	lncRNA	37996-3_{6001..7220}	n345304|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_853|NULL|-1.3761500|-0.3435426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n345304|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_853|NULL|-1.3761500|-0.3435426	chr15	 50654294	 50655513	+	NA	NA	NA	NA	GABPB1	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.52;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00chr15:50638294-50647605"	NA	inter
LNCA_21_P0009951	0.9237846	A	1.9256201	A	0.499364268672267	0	lncRNA	TCONS_00028132	NA	NA	NA	NA	XLOC_013490	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013490), lincRNA [TCONS_00028132]"	chr20:23487690-23487749	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028132	TCONS_00028132	chr20	 23487690	 23487749	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12854_PI429285431	1.5065743	A	1.3124242	A	1.1440499955659	0	lncRNA	14480-1_{1..438}	lnc-ARFGEF2-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARFGEF2-3:5	chr20	 46989349	 46989786	+	lnc-ARFGEF2-3	lnc-ARFGEF2-3:5	XLOC_013551	linc-ARFGEF2-4	NA	NA	NA	inter
CUST_5805_PI429285431	3.9128106	P	4.6823463	P	0.586606230689204	0	lncRNA	5730-1_{1..568}	"transcript_id ""ENST00000578650.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578650.1"" | genecode_v17"	chr17	 29910181	 29910748	+	ENSG00000266877.1	ENST00000578650.1	RP1-41C23.1	RP1-41C23.1-001	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
CUST_34107_PI429285431	3.3764439	P	4.240697	P	0.549330728195194	0	lncRNA	35630-2_{3001..4760}	n340933|AY312160|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3398|NULL|11.1573000|-0.0816604	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340933|AY312160|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3398|NULL|11.1573000|-0.0816604	chr11	  1021090	  1022849	-	NA	NA	NA	NA	AP2A2	NA	chr11:1008090-1012245	inner
CUST_21336_PI429285431	0.91819936	A	0.9044387	A	1.00958379592569	0	lncRNA	22959-2_{3001..3488}	lnc-C8orf48-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C8orf48-2:1	chr8	 13199956	 13200443	+	lnc-C8orf48-2	lnc-C8orf48-2:1	ENSG00000253932.1	RP11-10C8.2	DLC1	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30chr8:13186956-13210263"	NA	inner
CUST_38437_PI429285431	3.6980112	P	4.163497	P	0.72422716654778	0	lncRNA	39464-1_{1..3000}	n382664|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bhh.3||2.0356700|-0.1180367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382664|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bhh.3||2.0356700|-0.1180367	chr15	 82764078	 82767077	-	NA	NA	NA	NA	NA	"hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_DNM1:range=chr9:130965750-1310154015'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310154015'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
CUST_51772_PI429285431	0.9623568	A	1.2906013	A	0.796505097554762	0	lncRNA	55323-1_{1..1420}	hg19_lincRNAsTranscripts_TCONS_l2_00012272 range=chr19:7981394-7984313 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012272 range=chr19:7981394-7984313 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	  7981394	  7982813	+	NA	NA	NA	NA	TIMM44	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr19:7991603-7994313"	NA	inner
CUST_23650_PI429285431	6.623847	P	6.7299013	P	0.929125703260015	0	lncRNA	25216-1_{1..278}	lnc-PRSS27-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRSS27-2:9	chr16	  2721346	  2721623	-	lnc-PRSS27-2	lnc-PRSS27-2:9	ENSG00000260565.1	ERVK13-1	NA	NA	NA	inter
CUST_23021_PI429285431	1.2480128	A	1.2779144	A	0.979487101895035	0	lncRNA	24593-1_{1..622}	lnc-MYL10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYL10-2:1	chr7	101467663	101468284	-	lnc-MYL10-2	lnc-MYL10-2:1	ENSG00000259294.1	CTA-339C12.1	CUX1	NA	chr7:101459184-101478009	inner
CUST_50987_PI429285431	8.615098	P	8.74186	P	0.915884766576603	0	lncRNA	54631-1_{1..1198}	hg19_lincRNAsTranscripts_TCONS_l2_00005950 range=chr12:122501282-122506816 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005950 range=chr12:122501282-122506816 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	122501282	122502479	+	NA	NA	NA	NA	BCL7A	NA	chr12:122491282-122499950	inter
CUST_7424_PI429285431	0.9136096	A	0.9167493	A	0.997826092164966	0	lncRNA	9067-1_{1..3000}	lnc-PNMA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PNMA2-1:1	chr8	 26227188	 26230187	-	lnc-PNMA2-1	lnc-PNMA2-1:1	ENSG00000245176	ENST00000500096	PPP2R2A	"hg19_refFlat_PPP2R2A:range=chr8:26150763-262279295'pad=0,hg19_refFlat_PPP2R2A:range=chr8:26150763-262279295'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPP2R2A:range=chr8:26149336-262279295'pad=0,hg19_refFlat_PPP2R2A:range=chr8:26149336-262279295'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20chr8:26217188-26230196"	NA	inner
CUST_20253_PI429285431	12.230994	P	12.113898	P	1.08454957468007	0	lncRNA	21896-1_{1..724}	lnc-CTD-2517M22.14.1-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2517M22.14.1-2:7	chr8	145741148	145741871	-	lnc-CTD-2517M22.14.1-2	lnc-CTD-2517M22.14.1-2:7	ENSG00000160957.7	RECQL4	LRRC24	NA	chr8:145747761-145751277	inner
LNCA_33_P3353757	0.92183053	A	0.9071062	A	1.01025838798771	0	lncRNA	XR_108620	XR_108620	XR_108620	   643962	Hs.730065	LOC643962	uncharacterized LOC643962	NA	THC2603676	NA	"PREDICTED: Homo sapiens hypothetical LOC643962 (LOC643962), miscRNA [XR_108620]"	chr6:87540473-87540414	hs|6q14.3	Agilent_HUMAN_G3V2	XR_108620	XR_108620	chr6	 87540414	 87540473	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36742_PI429285431	4.4180794	P	3.7227073	P	1.61930202972542	0	lncRNA	37915-2_{3001..4088}	n345222|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_771|NULL|-1.3919000|-0.3917353	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345222|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_771|NULL|-1.3919000|-0.3917353	chr13	 42815942	 42817029	+	NA	NA	NA	NA	DGKH	"hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-24.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.22;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-21.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30chr13:42802942-42803891"	NA	inter
CUST_8534_PI429285431	0.9144021	A	0.9197295	A	0.996314137240238	0	lncRNA	10094-2_{3001..6000}	lnc-RUNDC3B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RUNDC3B-1:1	chr7	 87211000	 87213999	+	lnc-RUNDC3B-1	lnc-RUNDC3B-1:1	ENSG00000249009	ENST00000505724	ABCB1	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40chr7:87198000-87224789"	NA	inner
CUST_10916_PI429285431	0.9130741	A	0.9169693	A	0.997303694680815	0	lncRNA	12460-1_{1..315}	lnc-CUL2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CUL2-1:5	chr10	 35389772	 35390086	-	lnc-CUL2-1	lnc-CUL2-1:5	XLOC_008777	linc-CUL2-1	NA	NA	NA	inter
CUST_2734_PI429285431	1.2336991	A	0.90317357	A	1.25747134973664	0	lncRNA	2719-1_{1..662}	"transcript_id ""ENST00000462565.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000462565.1"" | genecode_v17"	chr7	   135853	   136514	-	ENSG00000242474.1	ENST00000462565.1	AC093627.9	AC093627.9-001	NA	NA	NA	inter
CUST_49673_PI429285431	1.6617736	A	1.3527226	A	1.23889249248657	0	lncRNA	53452-1_{1..2430}	hg19_lincRNAsTranscripts_TCONS_l2_00026959 range=chr7:149244300-149321991 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026959 range=chr7:149244300-149321991 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	149244300	149246729	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43114_PI429285431	0.90305376	A	0.9033096	A	0.999822680948207	0	lncRNA	47897-1_{1..125}	ENST00000408088 ncrna:snRNA chromosome:GRCh37:3:51645454:51645578:-1 gene:ENSG00000221015 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408088 ncrna:snRNA chromosome:GRCh37:3:51645454:51645578:-1 gene:ENSG00000221015 gene_biotype:snRNA transcript_biotype:snRNA	chr3	 51645454	 51645578	-	ENSG00000221015	ENST00000408088	NA	NA	RAD54L2	NA	chr3:51635454-51655578	inner
CUST_22035_PI429285431	1.856511	A	2.1023324	A	0.843335505423256	0	lncRNA	23644-1_{1..560}	lnc-RP11-683L23.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-683L23.1.1-1:1	chr18	    73312	    73871	-	lnc-RP11-683L23.1.1-1	lnc-RP11-683L23.1.1-1:1	ENSG00000262735.1	RP11-683L23.4	NA	NA	NA	inter
CUST_18877_PI429285431	2.7339177	A	3.1151395	P	0.76778708615597	0	lncRNA	20570-1_{1..584}	lnc-TSPEAR-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TSPEAR-2:1	chr21	 45845033	 45845616	-	lnc-TSPEAR-2	lnc-TSPEAR-2:1	ENSG00000230061	AP001065.2	TRPM2	NA	chr21:45835033-45855155	inner
CUST_14550_PI429285431	0.9092163	A	1.2508948	A	0.789122674737238	0	lncRNA	16218-1_{1..221}	lnc-ARFIP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARFIP1-1:1	chr4	153602515	153602735	+	lnc-ARFIP1-1	lnc-ARFIP1-1:1	XLOC_003741	linc-ARFIP1-1	TMEM154	NA	chr4:153592515-153601317	inter
CUST_32964_PI429285431	2.462133	A	2.5033667	A	0.971823550994709	0	lncRNA	34581-1_{1..1255}	n339639|U79264|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2083|NULL|-0.6134230|-0.1572870	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339639|U79264|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2083|NULL|-0.6134230|-0.1572870	chr3	147127414	147128668	-	NA	NA	NA	NA	ZIC1	"hg19_refFlat_ZIC1:range=chr3:147127900-1471313385'pad=0,hg19_refFlat_ZIC1:range=chr3:147127900-1471313385'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.20;hg19_refFlat_ZIC5:range=chr13:100617631-1006239295'pad=0,hg19_refFlat_ZIC5:range=chr13:100617631-1006239295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20chr3:147127181-147134506"	NA	inner
CUST_26992_PI429285431	0.9611775	A	0.90295947	A	1.04117893591867	0	lncRNA	28519-1_{1..747}	n324092|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000037008|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000037008|-1.0385300|-0.2950376	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324092|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000037008|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000037008|-1.0385300|-0.2950376	chr9	 45048576	 45049322	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22186_PI429285431	1.0767493	A	0.91863334	A	1.11582900609592	0	lncRNA	23786-1_{1..566}	lnc-MAGEL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAGEL2-1:1	chr15	 23814444	 23815009	-	lnc-MAGEL2-1	lnc-MAGEL2-1:1	ENSG00000260978.1	RP11-73C9.1	MKRN3	"hg19_refFlat_MKRN3:range=chr15:23810930-238124535'pad=0,hg19_refFlat_MKRN3:range=chr15:23810930-238124535'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60chr15:23810454-23813167"	NA	inter
CUST_9958_PI429285431	3.38973	P	3.7417247	P	0.783500065272618	0	lncRNA	11482-1_{1..470}	lnc-PPP1R3D-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP1R3D-2:1	chr20	 58909836	 58910305	-	lnc-PPP1R3D-2	lnc-PPP1R3D-2:1	XLOC_013826	linc-PPP1R3D-2	NA	NA	NA	inter
CUST_49220_PI429285431	4.3540487	P	4.5025935	P	0.902159983536721	0	lncRNA	53040-1_{1..1090}	hg19_lincRNAsTranscripts_TCONS_l2_00020926 range=chr4:184772683-184773868 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020926 range=chr4:184772683-184773868 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	184772683	184773772	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38850_PI429285431	0.92745835	A	0.91122043	A	1.0113188473087	0	lncRNA	39842-1_{1..2562}	n384702|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kkc.2||-0.9946960|-0.3480623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384702|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kkc.2||-0.9946960|-0.3480623	chr5	 92745064	 92747625	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18417_PI429285431	7.84768	P	7.144497	P	1.62809287400482	0	lncRNA	20142-1_{1..1393}	lnc-HOXA9-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HOXA9-1:4	chr7	 27208913	 27210305	-	lnc-HOXA9-1	lnc-HOXA9-1:4	ENSG00000257667	RP1-170O19.21	HOXA10	NA	chr7:27210210-27219063	inter
CUST_8592_PI429285431	6.513852	P	6.879471	P	0.776135796197312	0	lncRNA	10148-1_{1..2749}	lnc-PTS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PTS-1:1	chr11	112230792	112233540	+	lnc-PTS-1	lnc-PTS-1:1	ENSG00000250303	RP11-356J5.12	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_1722_PI429285431	0.87592053	A	0.890301	A	0.990081731455263	0	lncRNA	1707-1_{1..712}	"transcript_id ""ENST00000509416.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509416.1"" | genecode_v17"	chr4	 28437071	 28437782	+	ENSG00000250064.1	ENST00000509416.1	RP11-123O22.1	RP11-123O22.1-001	NA	NA	NA	inter
CUST_10056_PI429285431	3.4021978	P	3.6065612	P	0.867921579570964	0	lncRNA	11582-1_{1..239}	lnc-METTL14-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-METTL14-2:1	chr4	119539321	119539559	+	lnc-METTL14-2	lnc-METTL14-2:1	XLOC_003662	linc-METTL14-2	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40"	NA	inter
CUST_44670_PI429285431	5.0487437	P	5.320985	P	0.828032156062267	0	lncRNA	49231-1_{1..554}	"gi|222831605|ref|NR_026737.1| Homo sapiens chromosome 6 open reading frame 52 (C6orf52), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|222831605|ref|NR_026737.1| Homo sapiens chromosome 6 open reading frame 52 (C6orf52), transcript variant 3, non-coding RNA"	Chr6	 10671651	 10672204	-	347744	NR_026737.1	NA	NA	NA	NA	NA	inter
CUST_4662_PI429285431	5.5816903	P	5.699323	P	0.921698814358939	0	lncRNA	4608-1_{1..194}	"transcript_id ""ENST00000445967.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445967.1"" | genecode_v17"	chr13	 86634948	 86635141	+	ENSG00000232252.1	ENST00000445967.1	RP11-30L8.1	RP11-30L8.1-001	NA	NA	NA	inter
LNCA_33_P3342345	5.5857925	P	5.5593276	P	1.01851335683314	0	lncRNA	XR_109229	XR_109229	XR_109229	   400464	Hs.187134	LOC400464	uncharacterized LOC400464	NA	THC2483012	NA	"PREDICTED: Homo sapiens hypothetical LOC400464 (LOC400464), miscRNA [XR_109229]"	chr15:100348110-100348169	hs|15q26.3	Agilent_HUMAN_G3V2	XR_109229	XR_109229	chr15	100348110	100348169	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48099_PI429285431	0.921032	A	0.90998167	A	1.00768891413112	0	lncRNA	51973-1_{1..791}	"gi|397138432|ref|XR_159492.1| PREDICTED: Homo sapiens uncharacterized LOC100996815 (LOC100996815), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138432|ref|XR_159492.1| PREDICTED: Homo sapiens uncharacterized LOC100996815 (LOC100996815), misc_RNA"	NA	NA	NA	NA	NA	XR_159492.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008669	2.4763508	A	3.2862296	P	0.57042977740652	0	lncRNA	THC2662571	NA	NA	NA	NA	XLOC_011344	NA	NA	THC2662571	NA	"BROAD Institute lincRNA (XLOC_011344), lincRNA [TCONS_00023494]"	chr15:089618541-089618600	hs|15q26.1	Agilent_HUMAN_G3V2	THC2662571	THC2662571	chr15	 89618541	 89618600	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17763_PI429285431	5.904738	P	6.2100677	P	0.809257255346866	0	lncRNA	19495-1_{1..583}	lnc-RGMA-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGMA-9:1	chr15	 95128194	 95128776	-	lnc-RGMA-9	lnc-RGMA-9:1	XLOC_011590	linc-RGMA-8	NA	NA	NA	inter
CUST_35266_PI429285431	9.557425	P	10.466314	P	0.532595077632543	0	lncRNA	36667-1_{1..2525}	n342275|D83986|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4766|NULL|11.6603000|-0.1060031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342275|D83986|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4766|NULL|11.6603000|-0.1060031	chr22	 35796127	 35798651	+	NA	NA	NA	NA	HMOX1	NA	chr22:35786127-35790207	inner
CUST_34906_PI429285431	0.9015099	A	0.89896035	A	1.00176877583604	0	lncRNA	36330-1_{1..378}	n341824|AX721062|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4303|NULL|0.4550640|-0.2361995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341824|AX721062|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4303|NULL|0.4550640|-0.2361995	chr12	 11312032	 11312409	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18001_PI429285431	1.1464187	A	0.907681	A	1.17995979238657	0	lncRNA	19735-1_{1..267}	lnc-PARP8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PARP8-1:1	chr5	 50177453	 50177719	+	lnc-PARP8-1	lnc-PARP8-1:1	XLOC_004377	linc-ISL1-2	NA	NA	NA	inter
CUST_2650_PI429285431	0.9225949	A	0.91828537	A	1.00299160451314	0	lncRNA	2637-1_{1..3000}	"transcript_id ""ENST00000565399.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565399.1"" | genecode_v17"	chr6	141768148	141771147	+	ENSG00000259828.1	ENST00000565399.1	RP11-63E9.1	RP11-63E9.1-001	NA	NA	NA	inter
CUST_18603_PI429285431	6.753586	P	6.903697	P	0.901181123665209	0	lncRNA	20310-1_{1..253}	lnc-EIF2AK3-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF2AK3-4:2	chr2	 89161398	 89161650	-	lnc-EIF2AK3-4	lnc-EIF2AK3-4:2	ENSG00000231486	AC096579.7	NA	NA	NA	inter
CUST_7411_PI429285431	5.4672885	P	5.2533736	P	1.15983123772529	0	lncRNA	9054-1_{1..876}	lnc-UCN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-UCN-1:1	chr2	 27525600	 27526475	-	lnc-UCN-1	lnc-UCN-1:1	ENSG00000248793	AC013413.1	TRIM54	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70chr2:27515600-27530307"	NA	inner
CUST_18952_PI429285431	0.92313796	A	0.9262982	A	0.99781188597346	0	lncRNA	20643-1_{1..719}	lnc-ZFHX4-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZFHX4-3:2	chr8	 78518908	 78519626	+	lnc-ZFHX4-3	lnc-ZFHX4-3:2	ENSG00000254366	RP11-38H17.1	NA	NA	NA	inter
CUST_51054_PI429285431	7.6277504	P	6.0373154	P	3.01140135274242	0	lncRNA	54694-5_{12001..13626}	hg19_lincRNAsTranscripts_TCONS_l2_00006731 range=chr13:23474438-23493355 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006731 range=chr13:23474438-23493355 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 23486438	 23488063	+	NA	NA	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_30719_PI429285431	6.544271	P	6.565884	P	0.985130666745794	0	lncRNA	32501-1_{1..293}	n336265|Y10151|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325554|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325554|0.1123720|-0.1287286	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336265|Y10151|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325554|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325554|0.1123720|-0.1287286	chr7	 30721575	 30721867	-	NA	NA	NA	NA	CRHR2	NA	chr7:30711575-30739719	inner
CUST_44314_PI429285431	2.7984157	A	1.6857905	A	2.16238768391255	0	lncRNA	48946-1_{1..914}	"gi|310119337|ref|XR_108533.1| PREDICTED: Homo sapiens uncharacterized LOC100505902 (LOC100505902), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310119337|ref|XR_108533.1| PREDICTED: Homo sapiens uncharacterized LOC100505902 (LOC100505902), misc_RNA"	Chr3	193727749	193728662	-	100505902	XR_108533.2	NA	NA	NA	NA	NA	inter
CUST_38002_PI429285431	6.9145885	P	6.9837575	P	0.953186880650975	0	lncRNA	39088-2_{3001..5671}	n377576|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029939||5.0316600|-0.3559811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377576|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029939||5.0316600|-0.3559811	chr6	  2339692	  2342362	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30"	NA	inter
CUST_19764_PI429285431	7.6680017	P	7.477184	P	1.14141046855272	0	lncRNA	21422-1_{1..424}	lnc-AKIRIN1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AKIRIN1-1:3	chr1	 39341613	 39342036	+	lnc-AKIRIN1-1	lnc-AKIRIN1-1:3	ENSG00000228436.1	RP5-864K19.4	MYCBP	"hg19_refFlat_GJA9:range=chr1:39340223-393417705'pad=0,hg19_refFlat_GJA9:range=chr1:39340223-393417705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60chr1:39331613-39339050"	NA	inter
CUST_47967_PI429285431	0.91700953	A	1.6370028	A	0.607100274241164	0	lncRNA	51858-1_{1..2116}	"gi|410172683|ref|XR_171918.1| PREDICTED: Homo sapiens uncharacterized LOC101060319 (LOC101060319), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172683|ref|XR_171918.1| PREDICTED: Homo sapiens uncharacterized LOC101060319 (LOC101060319), misc_RNA"	NA	NA	NA	NA	NA	XR_171918.1	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90"	NA	Unknown
CUST_14918_PI429285431	0.9244931	A	1.1327372	A	0.86559009768498	0	lncRNA	16580-1_{1..1016}	lnc-DTNBP1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DTNBP1-2:4	chr6	 15757866	 15758881	-	lnc-DTNBP1-2	lnc-DTNBP1-2:4	XLOC_005621	linc-DTNBP1-1	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10"	NA	inter
CUST_51874_PI429285431	4.3008757	P	4.0274563	P	1.20866915961173	0	lncRNA	55424-3_{6001..6860}	hg19_lincRNAsTranscripts_TCONS_l2_00012668 range=chr19:53088914-53103361 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012668 range=chr19:53088914-53103361 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 53094914	 53095773	+	NA	NA	NA	NA	ZNF701	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10chr19:53078914-53090427"	NA	inner
CUST_41534_PI429285431	4.53298	P	4.673871	P	0.906958849845321	0	lncRNA	42793-1_{1..82}	ENST00000577482 ncrna:miRNA chromosome:GRCh37:10:6194159:6194240:1 gene:ENSG00000263628 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577482 ncrna:miRNA chromosome:GRCh37:10:6194159:6194240:1 gene:ENSG00000263628 gene_biotype:miRNA transcript_biotype:miRNA	chr10	  6194159	  6194240	+	ENSG00000263628	ENST00000577482	NA	NA	PFKFB3	NA	chr10:6186843-6204240	inner
CUST_30789_PI429285431	4.757773	P	4.637131	P	1.08721856768883	0	lncRNA	32576-1_{1..390}	n336666|Z68975|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327612|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327612|2.4257200|-0.0963185	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336666|Z68975|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327612|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327612|2.4257200|-0.0963185	chr2	 89160396	 89160785	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43444_PI429285431	10.259795	P	10.074113	P	1.13735450364764	0	lncRNA	48252-1_{1..2947}	"gi|386869230|ref|NR_048549.1| Homo sapiens solute carrier family 6 (neurotransmitter transporter, glycine), member 9 (SLC6A9), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386869230|ref|NR_048549.1| Homo sapiens solute carrier family 6 (neurotransmitter transporter, glycine), member 9 (SLC6A9), transcript variant 6, non-coding RNA"	Chr1	 44462155	 44465101	-	6536	NR_048549.1	NA	NA	NA	NA	NA	inter
CUST_42815_PI429285431	11.363606	P	11.260444	P	1.07412507818521	0	lncRNA	45821-1_{1..139}	ENST00000384186 ncrna:snoRNA chromosome:GRCh37:11:73963459:73963597:-1 gene:ENSG00000206913 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384186 ncrna:snoRNA chromosome:GRCh37:11:73963459:73963597:-1 gene:ENSG00000206913 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 73963459	 73963597	-	ENSG00000206913	ENST00000384186	NA	NA	PPME1	NA	chr11:73953459-73965748	inner
CUST_22054_PI429285431	2.2266457	A	2.8009584	A	0.671606128387351	0	lncRNA	23662-1_{1..502}	lnc-C2orf42-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:6	chr2	 70314413	 70314914	-	lnc-C2orf42-3	lnc-C2orf42-3:6	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_10408_PI429285431	4.161139	P	3.570275	P	1.50614847831175	0	lncRNA	11935-1_{1..646}	lnc-TGFBRAP1-6:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGFBRAP1-6:9	chr2	105461519	105462164	-	lnc-TGFBRAP1-6	lnc-TGFBRAP1-6:9	XLOC_002241	linc-MFSD9-15	NA	NA	NA	inter
CUST_5241_PI429285431	1.0313591	A	0.91718364	A	1.08235627226284	0	lncRNA	5182-1_{1..361}	"transcript_id ""ENST00000562869.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562869.1"" | genecode_v17"	chr15	 74781943	 74782303	+	ENSG00000261775.1	ENST00000562869.1	RP11-10O17.3	RP11-10O17.3-001	NA	NA	NA	inter
CUST_35851_PI429285431	5.3647184	P	6.109288	P	0.59684590232275	0	lncRNA	37248-1_{1..687}	n344519|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_67|NULL|-1.2908500|-0.0897232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344519|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_67|NULL|-1.2908500|-0.0897232	chr17	 70427268	 70427954	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41553_PI429285431	4.8490167	P	4.289562	P	1.47371208839647	0	lncRNA	42847-1_{1..70}	ENST00000581736 ncrna:miRNA chromosome:GRCh37:9:91360751:91360820:-1 gene:ENSG00000265873 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581736 ncrna:miRNA chromosome:GRCh37:9:91360751:91360820:-1 gene:ENSG00000265873 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 91360751	 91360820	-	ENSG00000265873	ENST00000581736	NA	NA	NA	NA	NA	inter
CUST_48152_PI429285431	2.1471374	A	1.8330269	A	1.243244888819	0	lncRNA	52018-1_{1..3000}	"gi|410169917|ref|XR_172430.1| PREDICTED: Homo sapiens hect domain and RLD 2 pseudogene 7 (HERC2P7), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410169917|ref|XR_172430.1| PREDICTED: Homo sapiens hect domain and RLD 2 pseudogene 7 (HERC2P7), misc_RNA"	NA	NA	NA	NA	NA	XR_172430.1	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	Unknown
CUST_1698_PI429285431	0.9227721	A	0.9097888	A	1.00903995357666	0	lncRNA	1682-1_{1..316}	"transcript_id ""ENST00000503163.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503163.1"" | genecode_v17"	chr4	 12949198	 12949513	-	ENSG00000250098.1	ENST00000503163.1	RP11-22A3.1	RP11-22A3.1-001	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10"	NA	inter
CUST_17712_PI429285431	3.5191798	P	3.6483107	P	0.914382121134127	0	lncRNA	19443-1_{1..3000}	lnc-CDH12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CDH12-1:1	chr5	 21341294	 21344293	-	lnc-CDH12-1	lnc-CDH12-1:1	XLOC_004752	linc-CDH18-1	NA	NA	NA	inter
CUST_21212_PI429285431	6.7823253	P	7.1985617	P	0.749376997906807	0	lncRNA	22837-1_{1..449}	lnc-PRDM11-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRDM11-1:2	chr11	 45275925	 45276373	+	lnc-PRDM11-1	lnc-PRDM11-1:2	ENSG00000254497.1	CTD-2560E9.5	SYT13	"hg19_refFlat_SYT13:range=chr11:45265603-453077585'pad=0,hg19_refFlat_SYT13:range=chr11:45265603-453077585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr11:45265925-45286200"	NA	inner
CUST_36362_PI429285431	0.9007377	A	0.89614546	A	1.00318816964509	0	lncRNA	37583-2_{3001..3159}	n344880|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_429|NULL|-1.3514000|-0.3455275	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344880|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_429|NULL|-1.3514000|-0.3455275	chr6	158669211	158669369	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30"	NA	inter
CUST_10223_PI429285431	1.4344416	A	2.8554525	A	0.373450542734947	0	lncRNA	11748-1_{1..657}	lnc-ABHD12B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABHD12B-4:1	chr14	 51413108	 51413764	+	lnc-ABHD12B-4	lnc-ABHD12B-4:1	XLOC_010825	linc-TMX1	PYGL	NA	chr14:51403108-51411248	inter
CUST_23715_PI429285431	2.1638153	A	2.560292	P	0.759711360418617	0	lncRNA	25279-2_{3001..4462}	lnc-RBM42-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBM42-1:1	chr19	 36116778	 36118239	+	lnc-RBM42-1	lnc-RBM42-1:1	ENSG00000089336.6	AC002115.6	RBM42	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr19:36119980-36126251"	NA	inner
CUST_23497_PI429285431	3.2832673	P	2.747071	A	1.45014413301491	0	lncRNA	25064-1_{1..1120}	lnc-IDS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IDS-1:1	chrX	148622240	148623359	-	lnc-IDS-1	lnc-IDS-1:1	ENSG00000241769.2	AF011889.4	CXorf40A	NA	chrX:148622519-148632086	inter
CUST_44058_PI429285431	4.8943496	P	5.983851	P	0.469923753691645	0	lncRNA	48732-2_{3001..3906}	"gi|221139805|ref|NR_026597.1| Homo sapiens disrupted in renal carcinoma 3 (DIRC3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|221139805|ref|NR_026597.1| Homo sapiens disrupted in renal carcinoma 3 (DIRC3), non-coding RNA"	Chr2	218151746	218152651	-	729582	NR_026597.1	NA	NA	NA	NA	NA	inter
CUST_23111_PI429285431	6.5276704	P	6.713917	P	0.878889319437133	0	lncRNA	24682-1_{1..707}	lnc-ZDHHC13-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZDHHC13-2:1	chr11	 18960852	 18961558	+	lnc-ZDHHC13-2	lnc-ZDHHC13-2:1	ENSG00000255244.1	RP11-583F24.8	MRGPRX1	NA	chr11:18955360-18956549	inter
CUST_25955_PI429285431	9.015034	P	9.23912	P	0.85613724812102	0	lncRNA	27475-1_{1..474}	lnc-USP6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP6-1:2	chr17	  5017453	  5017926	+	lnc-USP6-1	lnc-USP6-1:2	ENSG00000234327.2	AC012146.7	ZNF232	"hg19_refFlat_ZNF527:range=chr19:37865101-378807815'pad=0,hg19_refFlat_ZNF527:range=chr19:37865101-378807815'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60chr17:5009031-5026397"	NA	inner
CUST_44579_PI429285431	1.2629299	A	2.5684242	A	0.404582465406979	0	lncRNA	49160-1_{1..2502}	"gi|226061149|ref|NR_027435.1| Homo sapiens ARRDC3 antisense RNA 1 (ARRDC3-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226061149|ref|NR_027435.1| Homo sapiens ARRDC3 antisense RNA 1 (ARRDC3-AS1), non-coding RNA"	Chr5	 90676164	 90678665	+	100129716	NR_027435.1	NA	NA	NA	NA	NA	inter
CUST_20658_PI429285431	3.750956	P	4.149298	P	0.758729743473852	0	lncRNA	22297-1_{1..434}	lnc-SETD1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SETD1B-1:1	chr12	122294830	122295263	+	lnc-SETD1B-1	lnc-SETD1B-1:1	ENSG00000256811.1	RP11-7M8.2	HPD	"hg19_refFlat_HPD:range=chr12:122277634-1222967295'pad=0,hg19_refFlat_HPD:range=chr12:122277634-1222967295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_HPD:range=chr12:122277634-1222953145'pad=0,hg19_refFlat_HPD:range=chr12:122277634-1222953145'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50chr12:122284830-122304965"	NA	inner
CUST_33245_PI429285431	1.4210804	A	2.0587358	A	0.642756678308308	0	lncRNA	34832-1_{1..750}	n339949|CR623181|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2398|NULL|-1.2686600|-0.3470628	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339949|CR623181|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2398|NULL|-1.2686600|-0.3470628	chr10	  5916642	  5917391	+	NA	NA	NA	NA	ANKRD16	NA	chr10:5906642-5927392	inner
CUST_26247_PI429285431	0.9276842	A	0.93108046	A	0.997648660695828	0	lncRNA	27754-1_{1..704}	lnc-OR4N4-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR4N4-1:11	chr15	 22347583	 22348286	+	lnc-OR4N4-1	lnc-OR4N4-1:11	ENSG00000259176.1	RP11-69H14.6	OR4M2	NA	chr15:22337583-22357782	inter
CUST_36418_PI429285431	1.0019507	A	0.92205644	A	1.05694057097247	0	lncRNA	37635-2_{3001..6000}	n344934|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_483|NULL|-1.2951200|-0.3220261	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n344934|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_483|NULL|-1.2951200|-0.3220261	chr6	167394322	167397321	-	NA	NA	NA	NA	FGFR1OP	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.82;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10chr6:167412816-167421574"	NA	inter
CUST_25303_PI429285431	0.92820525	A	0.91596514	A	1.00852029054248	0	lncRNA	26833-1_{1..543}	lnc-WRN-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-WRN-8:1	chr8	 32144617	 32145159	+	lnc-WRN-8	lnc-WRN-8:1	ENSG00000253222.1	NRG1-IT2	NRG1	NA	chr8:32134617-32155082	inner
CUST_34942_PI429285431	0.92294884	A	0.93075645	A	0.994602794673861	0	lncRNA	36360-1_{1..498}	n341861|AJ293402|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4341|NULL|-0.4212920|-0.2594161	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341861|AJ293402|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4341|NULL|-0.4212920|-0.2594161	chr12	 24400759	 24401256	+	NA	NA	NA	NA	SOX5	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00chr12:24390759-24411200"	NA	inner
CUST_23464_PI429285431	2.0425131	A	1.8243974	A	1.16321332417607	0	lncRNA	25031-1_{1..761}	lnc-GATA5-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GATA5-2:3	chr20	 61148633	 61149393	-	lnc-GATA5-2	lnc-GATA5-2:3	ENSG00000174403.11	C20orf166-AS1	C20orf166	NA	chr20:61147660-61158718	inner
CUST_9013_PI429285431	0.9255601	A	0.9303988	A	0.99665168688217	0	lncRNA	10540-1_{1..547}	lnc-TMPRSS11E-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMPRSS11E-1:5	chr4	 68656166	 68656712	+	lnc-TMPRSS11E-1	lnc-TMPRSS11E-1:5	ENSG00000248049	RP11-453E17.1	NA	"hg19_refFlat_GNRHR:range=chr4:68606307-686200535'pad=0,hg19_refFlat_GNRHR:range=chr4:68606307-686200535'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_GNRHR:range=chr4:68606198-686200535'pad=0,hg19_refFlat_GNRHR:range=chr4:68606198-686200535'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10"	NA	inter
CUST_51005_PI429285431	0.9140404	A	1.0606157	A	0.903392411315499	0	lncRNA	54649-1_{1..822}	hg19_lincRNAsTranscripts_TCONS_l2_00007050 range=chr13:19648114-19692457 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007050 range=chr13:19648114-19692457 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 19648114	 19648935	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26215_PI429285431	3.4431653	P	3.8730211	P	0.742335979441291	0	lncRNA	27724-1_{1..484}	lnc-POU5F1B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POU5F1B-4:1	chr8	127569484	127569967	+	lnc-POU5F1B-4	lnc-POU5F1B-4:1	ENSG00000254010.1	RP11-103H7.5	FAM84B	"hg19_refFlat_FAM84B:range=chr8:127568702-1275696345'pad=0,hg19_refFlat_FAM84B:range=chr8:127568702-1275696345'pad=0 3'pad=0 strand=- repeatMasking=none,-104.00chr8:127564683-127570711"	NA	inner
CUST_31238_PI429285431	3.2820706	P	3.6392572	P	0.780685511226278	0	lncRNA	33027-1_{1..1922}	n337687|AK026716|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|69|NULL|-1.0851600|-0.3155148	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337687|AK026716|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|69|NULL|-1.0851600|-0.3155148	chrX	 47783117	 47785038	+	NA	NA	NA	NA	ZNF81	NA	chrX:47773117-47781655	inter
CUST_8051_PI429285431	2.030154	A	1.3326966	A	1.62164429333599	0	lncRNA	9659-1_{1..569}	lnc-SPAM1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPAM1-4:1	chr7	124765879	124766447	+	lnc-SPAM1-4	lnc-SPAM1-4:1	ENSG00000224897	RP11-3B12.1	NA	NA	NA	inter
CUST_47433_PI429285431	2.6369004	A	1.7604123	A	1.83590079095238	0	lncRNA	51468-2_{3001..4730}	"gi|398776358|ref|NR_073068.1| Homo sapiens BCL2-like 13 (apoptosis facilitator) (BCL2L13), transcript variant 12, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|398776358|ref|NR_073068.1| Homo sapiens BCL2-like 13 (apoptosis facilitator) (BCL2L13), transcript variant 12, non-coding RNA"	Chr22	 18141428	 18143157	+	23786	NR_073068.1	NA	NA	NA	NA	NA	inter
CUST_30767_PI429285431	5.4995594	P	5.9458723	P	0.733916124803087	0	lncRNA	32552-1_{1..264}	n336605|Z36779|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327087|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327087|1.6708500|-0.1993389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336605|Z36779|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327087|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327087|1.6708500|-0.1993389	chr19	 19153652	 19153915	+	NA	NA	NA	NA	SUGP2	NA	chr19:19143652-19144380	inner
CUST_50155_PI429285431	0.9123706	A	0.9114899	A	1.00061064108732	0	lncRNA	53880-1_{1..492}	hg19_lincRNAsTranscripts_TCONS_l2_00029897 range=chr9:2992062-3014177 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029897 range=chr9:2992062-3014177 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	  2992062	  2992553	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20"	NA	inter
LNCA_21_P0008835	1.1798947	A	2.4165812	A	0.424346151950076	0	lncRNA	TCONS_00023984	NA	NA	NA	NA	XLOC_011316	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011316), lincRNA [TCONS_00023984]"	chr15:77992058-77992117	hs|15q24.3	Agilent_HUMAN_G3V2	TCONS_00023984	TCONS_00023984	chr15	 77992058	 77992117	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18535_PI429285431	5.3406105	P	5.5168724	P	0.884993092556883	0	lncRNA	20247-3_{6001..8284}	lnc-CCNJ-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCNJ-1:2	chr10	 97926102	 97928385	+	lnc-CCNJ-1	lnc-CCNJ-1:2	ENSG00000177853	ZNF518A	ZNF518A	NA	chr10:97910102-97923517	inner
CUST_42004_PI429285431	0.9239991	A	0.90667063	A	1.01208360402293	0	lncRNA	43848-1_{1..86}	ENST00000385261 ncrna:miRNA chromosome:GRCh37:17:57228497:57228582:-1 gene:ENSG00000207996 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385261 ncrna:miRNA chromosome:GRCh37:17:57228497:57228582:-1 gene:ENSG00000207996 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 57228497	 57228582	-	ENSG00000207996	ENST00000385261	NA	NA	PRR11	NA	chr17:57232860-57238582	inner
CUST_31311_PI429285431	1.2117559	A	0.9244449	A	1.22036355419336	0	lncRNA	33093-1_{1..901}	n337775|BC014096|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|157|NULL|0.0789484|-0.2279652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337775|BC014096|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|157|NULL|0.0789484|-0.2279652	chr1	 24446260	 24447160	-	NA	NA	NA	NA	IL22RA1	NA	chr1:24446261-24469775	inner
CUST_26536_PI429285431	0.9073821	A	0.9033893	A	1.00277143139762	0	lncRNA	28043-1_{1..299}	lnc-COL12A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-COL12A1-1:1	chr6	 75443797	 75444095	-	lnc-COL12A1-1	lnc-COL12A1-1:1	ENSG00000238052.1	RP11-554D15.3	NA	NA	NA	inter
CUST_19541_PI429285431	7.1700335	P	7.186559	P	0.98861075046749	0	lncRNA	21197-1_{1..574}	lnc-IL3RA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL3RA-1:1	chrX	  1522270	  1522843	+	lnc-IL3RA-1	lnc-IL3RA-1:1	ENSG00000236017.2	ASMTL-AS1	ASMTL	"hg19_refFlat_ASMTL:range=chrY:1472162-15217335'pad=0,hg19_refFlat_ASMTL:range=chrY:1472162-15217335'pad=0 3'pad=0 strand=- repeatMasking=none,-98.90;hg19_refFlat_ASMTL:range=chrX:1522162-15717335'pad=0,hg19_refFlat_ASMTL:range=chrX:1522162-15717335'pad=0 3'pad=0 strand=- repeatMasking=none,-98.90;hg19_refFlat_ASMTL:range=chrY:1472162-15111295'pad=0,hg19_refFlat_ASMTL:range=chrY:1472162-15111295'pad=0 3'pad=0 strand=- repeatMasking=none,-98.90;hg19_refFlat_ASMTL:range=chrX:1522162-15611295'pad=0,hg19_refFlat_ASMTL:range=chrX:1522162-15611295'pad=0 3'pad=0 strand=- repeatMasking=none,-98.90chrX:1522032-1532386"	NA	inner
CUST_26252_PI429285431	7.4093914	P	7.2279625	P	1.13400649239712	0	lncRNA	27759-1_{1..869}	lnc-FOXB1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXB1-3:5	chr15	 60821741	 60822609	+	lnc-FOXB1-3	lnc-FOXB1-3:5	ENSG00000245534.2	RP11-219B17.1	RORA	NA	chr15:60811741-60832088	inner
CUST_8625_PI429285431	3.7165713	P	4.1082163	P	0.762259959305988	0	lncRNA	10178-1_{1..2214}	lnc-KDM6A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KDM6A-2:1	chrX	 45380853	 45383066	+	lnc-KDM6A-2	lnc-KDM6A-2:1	ENSG00000229563	XLOC_007966	NA	NA	NA	inter
CUST_51160_PI429285431	5.443629	P	5.852505	P	0.753209969120279	0	lncRNA	54783-1_{1..282}	hg19_lincRNAsTranscripts_TCONS_l2_00007709 range=chr14:48663331-48677413 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007709 range=chr14:48663331-48677413 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 48663331	 48663612	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014266	1.6125507	A	0.91546273	A	1.62122909307722	0	lncRNA	XR_109050	XR_109050	XR_109050	NA	NA	LOC100507417	uncharacterized LOC100507417	NA	THC2697931	NA	"PREDICTED: Homo sapiens hypothetical LOC100507417 (LOC100507417), miscRNA [XR_109050]"	chr11:47404679-47404620	hs|11p11.2	Agilent_HUMAN_G3V2	XR_109050	XR_109050	chr11	 47404620	 47404679	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20185_PI429285431	0.923797	A	1.4294267	A	0.704352878200759	0	lncRNA	21828-2_{3001..3061}	lnc-AC108134.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-AC108134.1-1:1	chr16	  3091309	  3091369	+	lnc-AC108134.1-1	lnc-AC108134.1-1:1	ENSG00000205890.3	RP11-473M20.5	CCDC64B	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CCDC64B:range=chr16:3078107-30854975'pad=0,hg19_refFlat_CCDC64B:range=chr16:3078107-30854975'pad=0 3'pad=0 strand=- repeatMasking=none,-105.80chr16:3078309-3085542"	NA	inter
CUST_35522_PI429285431	3.1596587	P	3.7511537	P	0.66365483493657	0	lncRNA	36928-1_{1..1741}	n342627|BC034301|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5129|NULL|-0.4881330|-0.2728757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n342627|BC034301|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5129|NULL|-0.4881330|-0.2728757	chr4	175752878	175754618	+	NA	NA	NA	NA	GLRA3	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10chr4:175742878-175750465"	NA	inter
CUST_35337_PI429285431	1.3381542	A	1.3308592	A	1.00506931439718	0	lncRNA	36747-1_{1..518}	n342378|AF308814|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4870|NULL|3.4698700|-0.0753722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342378|AF308814|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4870|NULL|3.4698700|-0.0753722	chr1	248285605	248286122	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1935_PI429285431	1.1049538	A	0.90742946	A	1.14672888264161	0	lncRNA	1927-1_{1..518}	"transcript_id ""ENST00000504874.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504874.1"" | genecode_v17"	chr4	149614184	149614701	+	ENSG00000250357.1	ENST00000504874.1	RP11-503L19.1	RP11-503L19.1-001	NA	NA	NA	inter
CUST_18611_PI429285431	2.9475403	P	1.745581	A	2.30051888563985	0	lncRNA	20318-1_{1..1892}	lnc-TAF9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TAF9-2:1	chr5	 68951125	 68953016	-	lnc-TAF9-2	lnc-TAF9-2:1	ENSG00000250552	AC139495.1	LOC100652852	NA	chr5:68949135-68950156	inter
CUST_28494_PI429285431	6.661624	P	6.191656	P	1.38507874574052	0	lncRNA	30162-1_{1..315}	n325837|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000315844|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000315844|-0.9676780|-0.1225118	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325837|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000315844|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000315844|-0.9676780|-0.1225118	chr11	  1880452	  1880766	+	NA	NA	NA	NA	LSP1	NA	chr11:1874200-1895721	inner
CUST_44800_PI429285431	13.833463	P	13.578978	P	1.1929098330425	0	lncRNA	49335-1_{1..1214}	"gi|224967066|ref|NR_027338.1| Homo sapiens triosephosphate isomerase 1 pseudogene 3 (TPI1P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224967066|ref|NR_027338.1| Homo sapiens triosephosphate isomerase 1 pseudogene 3 (TPI1P3), non-coding RNA"	Chr6	116359894	116361107	+	728402	NR_027338.1	NA	NA	NA	NA	NA	inter
CUST_16786_PI429285431	4.602315	P	5.2954435	P	0.618511146465512	0	lncRNA	18495-1_{1..1412}	lnc-GMDS-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GMDS-3:1	chr6	  1335800	  1337211	-	lnc-GMDS-3	lnc-GMDS-3:1	XLOC_005575	linc-HUS1B-1	NA	NA	NA	inter
CUST_24700_PI429285431	1.7121499	A	1.6493471	A	1.04449298279765	0	lncRNA	26246-1_{1..680}	lnc-GTDC1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTDC1-3:2	chr2	144406281	144406960	-	lnc-GTDC1-3	lnc-GTDC1-3:2	ENSG00000231758.2	AC092652.1	ARHGAP15	NA	chr2:144396281-144416454	inner
CUST_5251_PI429285431	1.5349076	A	1.3432403	A	1.14208284067728	0	lncRNA	5191-1_{1..571}	"transcript_id ""ENST00000569892.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569892.1"" | genecode_v17"	chr15	 78246417	 78246987	-	ENSG00000261403.1	ENST00000569892.1	RP11-114H24.3	RP11-114H24.3-001	LOC440292	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80chr15:78236417-78245144"	NA	inter
CUST_18880_PI429285431	0.90354013	A	0.9015978	A	1.0013472272596	0	lncRNA	20574-1_{1..540}	lnc-PZP-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PZP-2:2	chr12	  9411964	  9412503	-	lnc-PZP-2	lnc-PZP-2:2	ENSG00000256069	RP11-118B22.6	NA	NA	NA	inter
CUST_36080_PI429285431	1.43552	A	1.0758182	A	1.28316064534997	0	lncRNA	37385-1_{1..1632}	n344669|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_218|NULL|-1.3292900|-0.3559181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n344669|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_218|NULL|-1.3292900|-0.3559181	chr3	106828636	106830267	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001515	0.92539775	A	0.90851504	A	1.01177094148184	0	lncRNA	TCONS_00001510	NA	NA	NA	NA	XLOC_000854	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000854), lincRNA [TCONS_00001510]"	chr1:60433669-60433610	hs|1p32.1	Agilent_HUMAN_G3V2	TCONS_00001510	TCONS_00001510	chr1	 60433610	 60433669	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36748_PI429285431	0.9263607	A	1.3795214	A	0.73044082184972	0	lncRNA	37921-1_{1..760}	n345228|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_777|NULL|-1.2915600|-0.3828821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345228|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_777|NULL|-1.2915600|-0.3828821	chr13	 73596400	 73597159	-	NA	NA	NA	NA	PIBF1	NA	chr13:73586400-73590592	inter
CUST_10130_PI429285431	5.8867955	P	6.084626	P	0.871860667075785	0	lncRNA	11653-1_{1..330}	lnc-SLITRK6-12:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SLITRK6-12:2	chr13	 90204359	 90204688	-	lnc-SLITRK6-12	lnc-SLITRK6-12:2	XLOC_010686	linc-SLITRK6-5	NA	NA	NA	inter
CUST_7774_PI429285431	1.3738433	A	0.9152266	A	1.37422353880176	0	lncRNA	9400-1_{1..2927}	lnc-OR7C2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OR7C2-1:1	chr19	 16747550	 16750476	+	lnc-OR7C2-1	lnc-OR7C2-1:1	ENSG00000246896	ENST00000499938	MED26	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70chr19:16737550-16739015"	NA	inter
LNCA_21_P0008546	4.645295	P	4.9675508	P	0.799818302336997	0	lncRNA	TCONS_00023164	NA	NA	NA	NA	XLOC_011115	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011115), lincRNA [TCONS_00023164]"	chr14:97472479-97472420	hs|14q32.2	Agilent_HUMAN_G3V2	TCONS_00023164	TCONS_00023164	chr14	 97472420	 97472479	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33255_PI429285431	2.9138885	A	2.889337	A	1.01716343072818	0	lncRNA	34841-1_{1..1563}	n339959|AK024629|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2412|NULL|-1.1895500|-0.2957853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339959|AK024629|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2412|NULL|-1.1895500|-0.2957853	chr10	 11219702	 11221264	+	NA	NA	NA	NA	CELF2	NA	chr10:11209702-11231256	inner
CUST_35686_PI429285431	3.128402	P	2.9951103	A	1.09679332794578	0	lncRNA	37106-2_{3001..4158}	n342847|AL832582|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5350|NULL|-1.1187100|-0.3027009	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342847|AL832582|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5350|NULL|-1.1187100|-0.3027009	chr8	103841595	103842752	+	NA	NA	NA	NA	AZIN1	"hg19_refFlat_AZIN1:range=chr8:103840795-1038558805'pad=0,hg19_refFlat_AZIN1:range=chr8:103840795-1038558805'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00chr8:103838536-103876397"	NA	inner
CUST_26518_PI429285431	1.3401693	A	0.91296554	A	1.34462488973884	0	lncRNA	28025-1_{1..243}	lnc-NUDT13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUDT13-1:1	chr10	 74833539	 74833781	+	lnc-NUDT13-1	lnc-NUDT13-1:1	ENSG00000237768.1	RP11-344N10.2	P4HA1	"hg19_refFlat_P4HA1:range=chr10:74767980-748346415'pad=0,hg19_refFlat_P4HA1:range=chr10:74767980-748346415'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr10:74823539-74843766"	NA	inner
CUST_19362_PI429285431	0.9034133	A	0.8957429	A	1.00533087495067	0	lncRNA	21025-1_{1..473}	lnc-GPR65-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR65-3:1	chr14	 88646242	 88646714	+	lnc-GPR65-3	lnc-GPR65-3:1	ENSG00000258538.1	RP11-753D20.3	KCNK10	NA	chr14:88646452-88656542	inner
CUST_35483_PI429285431	1.2200335	A	0.906387	A	1.24284510032859	0	lncRNA	36891-1_{1..1235}	n342581|BC030742|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5080|NULL|-1.1111000|-0.2230910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342581|BC030742|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5080|NULL|-1.1111000|-0.2230910	chr18	 60643447	 60644681	+	NA	NA	NA	NA	PHLPP1	NA	chr18:60633447-60647666	inner
CUST_44087_PI429285431	5.603849	P	6.393137	P	0.578629587230409	0	lncRNA	48754-2_{3001..3343}	"gi|396578184|ref|NR_073043.1| Homo sapiens IQ motif containing with AAA domain 1 (IQCA1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|396578184|ref|NR_073043.1| Homo sapiens IQ motif containing with AAA domain 1 (IQCA1), transcript variant 4, non-coding RNA"	Chr2	237235790	237236132	-	79781	NR_073043.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0012821	3.3772645	P	4.4008718	P	0.491884909322515	0	lncRNA	TCONS_l2_00022102	NA	NA	NA	NA	XLOC_l2_011426	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011426), lincRNA [TCONS_l2_00022102]"	chr5:113714-113773	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_l2_00022102	TCONS_l2_00022102	chr5	   113714	   113773	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48568_PI429285431	2.9413607	A	0.89317554	A	4.13585371935015	0	lncRNA	52416-1_{1..665}	hg19_lincRNAsTranscripts_TCONS_l2_00013421 range=chr2:741967-748029 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013421 range=chr2:741967-748029 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	   741967	   742631	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15033_PI429285431	0.9074787	A	0.8961659	A	1.00787225999595	0	lncRNA	16696-1_{1..363}	lnc-ADAM29-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAM29-1:1	chr4	176346582	176346944	+	lnc-ADAM29-1	lnc-ADAM29-1:1	XLOC_003790	linc-WDR17	NA	NA	NA	inter
CUST_34573_PI429285431	0.89673734	A	0.8920573	A	1.00324922385201	0	lncRNA	36033-1_{1..712}	n341456|BC033547|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3926|NULL|-0.9432730|-0.2960688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341456|BC033547|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3926|NULL|-0.9432730|-0.2960688	chr8	 19102357	 19103068	-	NA	NA	NA	NA	SH2D4A	NA	chr8:19095947-19113037	inter
CUST_8785_PI429285431	0.9150132	A	0.9191341	A	0.997147685384739	0	lncRNA	10325-1_{1..503}	lnc-RPIA-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RPIA-1:5	chr2	 89072909	 89073411	+	lnc-RPIA-1	lnc-RPIA-1:5	ENSG00000230006	ANKRD36BP2	NA	NA	NA	inter
CUST_12073_PI429285431	0.9150788	A	2.3000033	A	0.38290953740557	0	lncRNA	13664-1_{1..420}	lnc-C9orf80-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf80-1:2	chr9	115512686	115513105	-	lnc-C9orf80-1	lnc-C9orf80-1:2	XLOC_007830	linc-C9orf80	SNX30	NA	chr9:115513134-115522736	inter
CUST_34266_PI429285431	1.8226597	A	1.6960703	A	1.09170979411551	0	lncRNA	35767-1_{1..883}	n341124|BC029570|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3590|NULL|-0.8088150|-0.2836452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341124|BC029570|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3590|NULL|-0.8088150|-0.2836452	chr11	112263840	112264722	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35106_PI429285431	0.9020846	A	1.489665	A	0.665458037245359	0	lncRNA	36513-1_{1..1720}	n342076|BC036257|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4557|NULL|-0.6608960|-0.2707306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342076|BC036257|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4557|NULL|-0.6608960|-0.2707306	chr6	 83829571	 83831290	-	NA	NA	NA	NA	DOPEY1	"hg19_refFlat_DOPEY1:range=chr6:83806697-838778865'pad=0,hg19_refFlat_DOPEY1:range=chr6:83806697-838778865'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20chr6:83819571-83858040"	NA	inner
CUST_45898_PI429285431	5.266618	P	5.5899663	P	0.799212858563264	0	lncRNA	50209-2_{3001..5415}	"gi|376319258|ref|NR_046356.1| Homo sapiens glutamate receptor, ionotropic, AMPA 4 (GRIA4), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|376319258|ref|NR_046356.1| Homo sapiens glutamate receptor, ionotropic, AMPA 4 (GRIA4), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NR_046356.1	NA	NA	NA	NA	NA	Unknown
CUST_2698_PI429285431	0.9202505	A	1.0472225	A	0.915751459260835	0	lncRNA	2684-1_{1..600}	"transcript_id ""ENST00000446476.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446476.1"" | genecode_v17"	chr6	164007615	164008214	+	ENSG00000228692.1	ENST00000446476.1	RP5-826L7.1	RP5-826L7.1-001	QKI	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90chr6:163997615-163999628"	NA	inter
CUST_10569_PI429285431	5.2657437	P	5.1506286	P	1.08306145006515	0	lncRNA	12101-1_{1..328}	lnc-C10orf25-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf25-2:1	chr10	 45572101	 45572428	-	lnc-C10orf25-2	lnc-C10orf25-2:1	XLOC_008802	linc-C10orf25	NA	NA	NA	inter
CUST_43308_PI429285431	1.1528696	A	0.8961549	A	1.1947549128665	0	lncRNA	48139-1_{1..1621}	ENST00000591193 havana:lincRNA chromosome:GRCh37:19:33440310:33441930:-1 gene:ENSG00000266914 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000591193 havana:lincRNA chromosome:GRCh37:19:33440310:33441930:-1 gene:ENSG00000266914 gene_biotype:lincRNA transcript_biotype:lincRNA	chr19	 33440310	 33441930	-	ENSG00000266914	ENST00000591193	NA	NA	CEP89	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10chr19:33430310-33451930"	NA	inner
CUST_18999_PI429285431	1.9575227	A	1.2826523	A	1.59645335387411	0	lncRNA	20690-1_{1..3000}	lnc-LRRC47-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-LRRC47-1:3	chr1	  3662851	  3665850	-	lnc-LRRC47-1	lnc-LRRC47-1:3	ENSG00000227372	TP73-AS1	CCDC27	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40chr1:3668965-3673340"	NA	inter
CUST_42251_PI429285431	7.797794	P	7.7481837	P	1.03498531640846	0	lncRNA	44388-1_{1..66}	ENST00000387460 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:15888:15953:1 gene:ENSG00000210195 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000387460 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:15888:15953:1 gene:ENSG00000210195 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	chrMT	    15888	    15953	+	ENSG00000210195	ENST00000387460	NA	NA	NA	NA	NA	Unknown
CUST_31760_PI429285431	2.4058304	A	3.0390997	A	0.644713768898807	0	lncRNA	33500-1_{1..600}	n338299|AF075036|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|693|NULL|-1.2467600|-0.2154240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n338299|AF075036|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|693|NULL|-1.2467600|-0.2154240	chr19	  9649408	  9650007	+	NA	NA	NA	NA	ZNF426	NA	chr19:9639408-9649303	inter
CUST_24358_PI429285431	0.8997618	A	0.8957144	A	1.00280938283896	0	lncRNA	25911-1_{1..530}	lnc-C8orf39-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C8orf39-1:1	chr8	 94756500	 94757029	+	lnc-C8orf39-1	lnc-C8orf39-1:1	ENSG00000253848.1	RP11-10N23.5	RBM12B	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-14.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50chr8:94746500-94753224"	NA	inter
CUST_27138_PI429285431	7.7386484	P	7.407058	P	1.25839984659956	0	lncRNA	28675-1_{1..3000}	n324255|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325234|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325234|0.4577750|-0.1902053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324255|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325234|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325234|0.4577750|-0.1902053	chr7	  2723992	  2726991	-	NA	NA	NA	NA	AMZ1	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.61;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90chr7:2719163-2739148"	NA	inner
CUST_19521_PI429285431	2.756974	A	2.8091984	A	0.964448160501884	0	lncRNA	21177-1_{1..2859}	lnc-DHRS7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHRS7-1:2	chr14	 60712263	 60715121	-	lnc-DHRS7-1	lnc-DHRS7-1:2	ENSG00000254718.2	CTD-2184C24.2	PPM1A	NA	chr14:60712470-60722371	inter
LNCA_21_P0002567	0.9277527	A	0.91644037	A	1.00787193165221	0	lncRNA	TCONS_00004682	NA	NA	NA	NA	XLOC_001327	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001327), lincRNA [TCONS_00004682]"	chr2:6142065-6142124	hs|2p25.2	Agilent_HUMAN_G3V2	TCONS_00004682	TCONS_00004682	chr2	  6142065	  6142124	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21784_PI429285431	1.0704911	A	0.9938188	A	1.05458274736793	0	lncRNA	23394-1_{1..478}	lnc-IFIT5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IFIT5-1:1	chr10	 91227783	 91228260	+	lnc-IFIT5-1	lnc-IFIT5-1:1	ENSG00000234452.1	RP11-168O10.6	SLC16A12	"hg19_refFlat_SLC16A12:range=chr10:91192821-912223355'pad=0,hg19_refFlat_SLC16A12:range=chr10:91192821-912223355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr10:91217783-91237897"	NA	inner
CUST_9797_PI429285431	7.642087	P	7.742628	P	0.932683176639498	0	lncRNA	11314-1_{1..264}	lnc-SGCG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SGCG-1:1	chr13	 23744691	 23744954	+	lnc-SGCG-1	lnc-SGCG-1:1	XLOC_010308	linc-SGCG-1	NA	NA	NA	inter
CUST_5383_PI429285431	2.6752527	A	3.270252	P	0.66204477642375	0	lncRNA	5317-2_{3001..3726}	"transcript_id ""ENST00000565467.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565467.1"" | genecode_v17"	chr16	  1028761	  1029486	-	ENSG00000260807.2	ENST00000565467.1	RP11-161M6.2	RP11-161M6.2-001	LMF1	NA	chr16:1015761-1031318	inter
CUST_1569_PI429285431	2.8522115	A	0.9114184	A	3.8391664215565	0	lncRNA	1557-1_{1..560}	"transcript_id ""ENST00000450500.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450500.1"" | genecode_v17"	chr3	177652611	177653170	+	ENSG00000225790.1	ENST00000450500.1	RP11-2L8.1	RP11-2L8.1-001	NA	NA	NA	inter
CUST_18259_PI429285431	7.1080675	P	7.067064	P	1.02882920384576	0	lncRNA	19993-1_{1..2318}	lnc-SLC17A9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC17A9-1:1	chr20	 61603616	 61605933	+	lnc-SLC17A9-1	lnc-SLC17A9-1:1	ENSG00000250123	AL121673.2	SLC17A9	NA	chr20:61593616-61599949	inter
CUST_29313_PI429285431	0.90683025	A	1.0262643	A	0.920548698765352	0	lncRNA	31064-1_{1..309}	n332499|DQ925687|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468693|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468693|1.6650700|-0.1846047	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332499|DQ925687|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468693|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468693|1.6650700|-0.1846047	chr1	204218357	204218665	-	NA	NA	NA	NA	PLEKHA6	NA	chr1:204208357-204236607	inner
CUST_42921_PI429285431	0.9204725	A	0.925156	A	0.996758908892157	0	lncRNA	46025-1_{1..67}	ENST00000391112 ncrna:snoRNA chromosome:GRCh37:8:101016811:101016877:1 gene:ENSG00000212414 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391112 ncrna:snoRNA chromosome:GRCh37:8:101016811:101016877:1 gene:ENSG00000212414 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	101016811	101016877	+	ENSG00000212414	ENST00000391112	NA	NA	RGS22	NA	chr8:101006811-101026877	inner
CUST_48523_PI429285431	0.90529937	A	0.90451336	A	1.0005449690571	0	lncRNA	52374-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00013506 range=chr2:21350513-21367638 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013506 range=chr2:21350513-21367638 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 21353513	 21356512	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41298_PI429285431	0.9802581	A	0.9256199	A	1.03859861020124	0	lncRNA	42295-1_{1..86}	ENST00000408444 ncrna:miRNA chromosome:GRCh37:10:14478575:14478660:1 gene:ENSG00000221371 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408444 ncrna:miRNA chromosome:GRCh37:10:14478575:14478660:1 gene:ENSG00000221371 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 14478575	 14478660	+	ENSG00000221371	ENST00000408444	NA	NA	NA	NA	NA	inter
CUST_7886_PI429285431	1.8266561	A	2.513957	A	0.62101460361848	0	lncRNA	9503-1_{1..2055}	lnc-RNFT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RNFT2-1:1	chr12	117149742	117151796	+	lnc-RNFT2-1	lnc-RNFT2-1:1	ENSG00000250553	XLOC_009900	C12orf49	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60chr12:117153596-117160681"	NA	inter
CUST_4799_PI429285431	7.0116863	P	6.445653	P	1.48044746899972	0	lncRNA	4743-1_{1..408}	"transcript_id ""ENST00000555246.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555246.1"" | genecode_v17"	chr14	 46410146	 46410553	+	ENSG00000258700.1	ENST00000555246.1	LINC00871	LINC00871-001	NA	NA	NA	inter
CUST_46554_PI429285431	0.94957197	A	0.9184247	A	1.02182438500445	0	lncRNA	50739-1_{1..1983}	"gi|310123394|ref|XR_109224.1| PREDICTED: Homo sapiens IFMQ9370 (UNQ9370), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123394|ref|XR_109224.1| PREDICTED: Homo sapiens IFMQ9370 (UNQ9370), misc_RNA"	Chr15	 93749301	 93751283	+	400454	XR_109224.2	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
CUST_47815_PI429285431	4.211932	P	4.1756067	P	1.02549844200795	0	lncRNA	51730-1_{1..1574}	"gi|332801004|ref|NR_038191.1| Homo sapiens double homeobox 4-like (DUX4L), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|332801004|ref|NR_038191.1| Homo sapiens double homeobox 4-like (DUX4L), non-coding RNA"	NA	NA	NA	NA	NA	NR_038191.1	NA	NA	NA	NA	NA	Unknown
CUST_3794_PI429285431	0.9134072	A	0.9075958	A	1.00403627944805	0	lncRNA	3762-1_{1..722}	"transcript_id ""ENST00000425050.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425050.1"" | genecode_v17"	chr10	109631334	109632055	-	ENSG00000229981.2	ENST00000425050.1	RP11-215N21.1	RP11-215N21.1-001	LOC100128304	NA	chr10:109673555-109675061	inter
CUST_17087_PI429285431	2.84799	A	4.0747595	P	0.427273130601462	0	lncRNA	18795-1_{1..479}	lnc-ROBO2-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ROBO2-4:5	chr3	 80838388	 80838866	+	lnc-ROBO2-4	lnc-ROBO2-4:5	XLOC_002716	linc-CADM2-8	NA	NA	NA	inter
CUST_40608_PI429285431	2.5690706	A	2.7316875	A	0.893403059290689	0	lncRNA	41354-1_{1..1348}	n410090|NR_036524_2|lncRNA|Homosapiens||RefGeneNoncode|NR_036524_2||-1.1455800|-0.3304991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410090|NR_036524_2|lncRNA|Homosapiens||RefGeneNoncode|NR_036524_2||-1.1455800|-0.3304991	chr6	  2702270	  2703617	+	NA	NA	NA	NA	MYLK4	"hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40chr6:2692270-2726888"	NA	inner
LNCA_21_P0004561	0.99204	A	0.9326702	A	1.04201048898029	0	lncRNA	TCONS_00010958	NA	NA	NA	NA	XLOC_004874	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004874), lincRNA [TCONS_00010958]"	chr5:71870167-71817327	hs|5q13.2	Agilent_HUMAN_G3V2	TCONS_00010958	TCONS_00010958	chr5	 71817327	 71870167	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013781	8.184254	P	7.5050373	P	1.60127012201906	0	lncRNA	TCONS_l2_00030292	NA	NA	NA	NA	XLOC_l2_015578	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015578), lincRNA [TCONS_l2_00030292]"	chrX:100779091-100779150	hs|Xq22.1	Agilent_HUMAN_G3V2	TCONS_l2_00030292	TCONS_l2_00030292	chrX	100779091	100779150	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23967_PI429285431	0.90971327	A	0.90531015	A	1.00305667233858	0	lncRNA	25522-1_{1..377}	lnc-GNRHR2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNRHR2-1:7	chr1	145493860	145494236	-	lnc-GNRHR2-1	lnc-GNRHR2-1:7	ENSG00000234222.1	RP11-315I20.1	LIX1L	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80chr1:145483860-145499091"	NA	inner
CUST_6441_PI429285431	0.91795385	A	0.9092401	A	1.00605818828724	0	lncRNA	6382-1_{1..560}	"transcript_id ""ENST00000585336.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585336.1"" | genecode_v17"	chr19	 31839787	 31840346	+	ENSG00000267662.1	ENST00000585336.1	AC007796.1	AC007796.1-001	TSHZ3	NA	chr19:31829787-31840190	inner
CUST_12255_PI429285431	1.303845	A	0.93020254	A	1.29561983497347	0	lncRNA	13861-1_{1..1020}	lnc-CRABP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRABP2-1:1	chr1	156682004	156683023	-	lnc-CRABP2-1	lnc-CRABP2-1:1	XLOC_001048	linc-CRABP2	ISG20L2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90chr1:156692413-156692982"	NA	inter
CUST_15985_PI429285431	2.023466	A	3.3808947	A	0.390277257327176	0	lncRNA	17684-1_{1..405}	lnc-RP11-150O12.3.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-150O12.3.1-1:2	chr8	 37456579	 37456983	-	lnc-RP11-150O12.3.1-1	lnc-RP11-150O12.3.1-1:2	XLOC_007055	linc-DUSP26-1	NA	NA	NA	inter
CUST_30094_PI429285431	6.023646	P	6.3856688	P	0.778072879984528	0	lncRNA	31866-1_{1..399}	n334631|U87972|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000222065|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000222065|2.0878600|-0.0842879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334631|U87972|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000222065|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000222065|2.0878600|-0.0842879	chr20	  2641379	  2641777	-	NA	NA	NA	NA	NOP56	NA	chr20:2633254-2639039	inner
CUST_50208_PI429285431	1.8967805	A	2.1299715	A	0.850751090168056	0	lncRNA	53934-1_{1..215}	hg19_lincRNAsTranscripts_TCONS_l2_00028751 range=chr9:45557952-45558878 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028751 range=chr9:45557952-45558878 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 45557952	 45558166	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47282_PI429285431	0.9739623	A	0.9307996	A	1.03037014710911	0	lncRNA	51351-1_{1..2431}	"gi|376319248|ref|NR_046353.1| Homo sapiens ganglioside induced differentiation associated protein 1-like 1 (GDAP1L1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|376319248|ref|NR_046353.1| Homo sapiens ganglioside induced differentiation associated protein 1-like 1 (GDAP1L1), transcript variant 6, non-coding RNA"	Chr20	 42875898	 42878328	+	78997	NR_046353.1	NA	NA	NA	NA	NA	inter
CUST_13966_PI429285431	3.9368405	P	4.322116	P	0.765632777782879	0	lncRNA	15612-1_{1..327}	lnc-CCKAR-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCKAR-1:4	chr4	 26861760	 26862086	-	lnc-CCKAR-1	lnc-CCKAR-1:4	XLOC_003912	linc-CCKAR-11	STIM2	NA	chr4:26862313-26871866	inter
CUST_50342_PI429285431	6.8037624	P	6.980669	P	0.884597702285856	0	lncRNA	54057-1_{1..491}	hg19_lincRNAsTranscripts_TCONS_l2_00029094 range=chr9:134430077-134433446 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029094 range=chr9:134430077-134433446 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	134430077	134430567	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46974_PI429285431	6.751692	P	7.16593	P	0.750415743188944	0	lncRNA	51077-1_{1..1592}	"gi|302148466|ref|NR_036468.1| Homo sapiens cell death-inducing DFFA-like effector a (CIDEA), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302148466|ref|NR_036468.1| Homo sapiens cell death-inducing DFFA-like effector a (CIDEA), transcript variant 2, non-coding RNA"	Chr18	 12254360	 12255951	+	1149	NR_036468.1	NA	NA	NA	NA	NA	inter
CUST_2284_PI429285431	2.7079232	A	2.788949	A	0.945385210089374	0	lncRNA	2276-1_{1..555}	"transcript_id ""ENST00000507948.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507948.1"" | genecode_v17"	chr5	102744642	102745196	-	ENSG00000250567.1	ENST00000507948.1	CTD-2154H6.1	CTD-2154H6.1-001	NA	NA	NA	inter
CUST_6099_PI429285431	0.98111117	A	0.95810676	A	1.01607324890039	0	lncRNA	6025-1_{1..484}	"transcript_id ""ENST00000581351.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581351.1"" | genecode_v17"	chr18	 14905634	 14906117	+	ENSG00000263618.1	ENST00000581351.1	RP11-527H14.4	RP11-527H14.4-002	NA	NA	NA	inter
CUST_32967_PI429285431	7.88484	P	7.9334865	P	0.966842971186959	0	lncRNA	34584-1_{1..1596}	n339643|BC036355|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2087|NULL|-0.8436170|-0.1105997	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339643|BC036355|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2087|NULL|-0.8436170|-0.1105997	chr3	150125888	150127483	-	NA	NA	NA	NA	TSC22D2	"hg19_refFlat_TSC22D2:range=chr3:150127138-1501764235'pad=0,hg19_refFlat_TSC22D2:range=chr3:150127138-1501764235'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.30chr3:150126788-150137466"	NA	inner
CUST_46963_PI429285431	7.3774996	P	5.6907215	P	3.21936934326546	0	lncRNA	51068-1_{1..2479}	"gi|298566317|ref|NR_033770.1| Homo sapiens Rho-associated, coiled-coil containing protein kinase 1 pseudogene 1 (ROCK1P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|298566317|ref|NR_033770.1| Homo sapiens Rho-associated, coiled-coil containing protein kinase 1 pseudogene 1 (ROCK1P1), non-coding RNA"	Chr18	   109065	   111543	+	727758	NR_033770.1	NA	NA	NA	NA	NA	inter
CUST_1624_PI429285431	1.0455438	A	0.92813224	A	1.08478682363835	0	lncRNA	1610-1_{1..464}	"transcript_id ""ENST00000427064.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427064.1"" | genecode_v17"	chr3	194548619	194549082	+	ENSG00000238031.1	ENST00000427064.1	AC090505.1	AC090505.1-001	NA	NA	NA	inter
LNCA_21_P0002066	2.5229545	A	2.2699811	A	1.19166060287292	0	lncRNA	ENST00000437233	NA	NA	NA	NA	XLOC_002172	NA	ENST00000437233	NA	NA	"BROAD Institute lincRNA (XLOC_002172), lincRNA [TCONS_00003324]"	chr2:77879600-77879541	hs|2p12	Agilent_HUMAN_G3V2	ENST00000437233	ENST00000437233	chr2	 77879541	 77879600	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47785_PI429285431	0.9743187	A	0.9223782	A	1.03665834600789	0	lncRNA	51708-1_{1..3000}	"gi|376319254|ref|NR_046355.1| Homo sapiens neuroligin 4, Y-linked (NLGN4Y), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|376319254|ref|NR_046355.1| Homo sapiens neuroligin 4, Y-linked (NLGN4Y), transcript variant 5, non-coding RNA"	ChrY	 16635385	 16638384	+	22829	NR_046355.1	NA	NA	NA	NA	NA	inter
CUST_10738_PI429285431	2.3534503	A	2.1529925	A	1.14906292099106	0	lncRNA	12274-1_{1..2020}	lnc-AC093726.6.1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC093726.6.1-1:7	chr7	154796051	154798070	+	lnc-AC093726.6.1-1	lnc-AC093726.6.1-1:7	XLOC_006301	linc-HTR5A-1	PAXIP1	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70chr7:154786051-154794682"	NA	inter
CUST_39372_PI429285431	8.862208	P	8.696954	P	1.12136348721477	0	lncRNA	40335-2_{3001..3948}	n386492|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mkn.1||2.0645400|-0.2834765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386492|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mkn.1||2.0645400|-0.2834765	chr9	 35409751	 35410698	+	NA	NA	NA	NA	UNC13B	NA	chr9:35396751-35405332	inter
CUST_41259_PI429285431	4.367971	P	4.292157	P	1.05395553291814	0	lncRNA	42221-1_{1..70}	ENST00000580859 ncrna:miRNA chromosome:GRCh37:17:15154944:15155013:-1 gene:ENSG00000265110 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580859 ncrna:miRNA chromosome:GRCh37:17:15154944:15155013:-1 gene:ENSG00000265110 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 15154944	 15155013	-	ENSG00000265110	ENST00000580859	NA	NA	PMP22	NA	chr17:15144944-15165013	inner
CUST_24977_PI429285431	5.156773	P	5.477871	P	0.800460434793925	0	lncRNA	26517-1_{1..827}	lnc-FAM13B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM13B-1:2	chr5	137224836	137225662	-	lnc-FAM13B-1	lnc-FAM13B-1:2	ENSG00000250159.1	RP11-381K20.2	PKD2L2	NA	chr5:137225125-137235006	inter
CUST_36480_PI429285431	0.90266186	A	0.9228911	A	0.986076007466141	0	lncRNA	37684-2_{3001..4417}	n344984|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_533|NULL|-1.4505600|-0.3700846	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344984|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_533|NULL|-1.4505600|-0.3700846	chr8	130313352	130314768	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70"	NA	inter
CUST_26209_PI429285431	0.9179193	A	0.9107848	A	1.00495750653229	0	lncRNA	27718-2_{3001..3385}	lnc-GJA10-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GJA10-3:3	chr6	 90572180	 90572564	+	lnc-GJA10-3	lnc-GJA10-3:3	ENSG00000118412.8	CASP8AP2	CASP8AP2	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.14;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70chr6:90559180-90580561"	NA	inner
CUST_40049_PI429285431	5.2108226	P	5.4273868	P	0.860612559634189	0	lncRNA	40902-1_{1..1805}	n407253|NR_026717_3|lncRNA|Homosapiens||RefGeneNoncode|NR_026717_3||-0.4669560|-0.2283196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407253|NR_026717_3|lncRNA|Homosapiens||RefGeneNoncode|NR_026717_3||-0.4669560|-0.2283196	chr6	  3232740	  3234544	+	NA	NA	NA	NA	TUBB2B	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.90;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.90;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00chr6:3224495-3227968"	NA	inter
CUST_21052_PI429285431	1.5867258	A	1.0690596	A	1.43163746129824	0	lncRNA	22679-1_{1..359}	lnc-TSPAN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSPAN1-1:1	chr1	 46604539	 46604897	+	lnc-TSPAN1-1	lnc-TSPAN1-1:1	ENSG00000227857.1	RP4-533D7.5	PIK3R3	NA	chr1:46594539-46598708	inter
LNCA_21_P0001146	4.624019	P	4.4584446	P	1.12161255215909	0	lncRNA	ENST00000420549	NA	NA	NA	NA	XLOC_000884	NA	ENST00000420549	NA	NA	"BROAD Institute lincRNA (XLOC_000884), lincRNA [TCONS_00000554]"	chr1:82680963-82680904	hs|1p31.1	Agilent_HUMAN_G3V2	ENST00000420549	ENST00000420549	chr1	 82680904	 82680963	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5487_PI429285431	0.9234703	A	0.93582135	A	0.99147544633979	0	lncRNA	5420-1_{1..540}	"transcript_id ""ENST00000566641.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566641.1"" | genecode_v17"	chr16	 31558019	 31558558	-	ENSG00000261648.1	ENST00000566641.1	CTD-2014E2.2	CTD-2014E2.2-001	NA	NA	NA	inter
CUST_6846_PI429285431	4.02104	P	4.067595	P	0.968245636684456	0	lncRNA	6794-1_{1..438}	"transcript_id ""ENST00000411605.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411605.1"" | genecode_v17"	chr21	 33452629	 33453066	-	ENSG00000230323.1	ENST00000411605.1	LINC00159	LINC00159-002	NA	NA	NA	inter
CUST_45158_PI429285431	3.3527808	P	3.3582332	P	0.996227816937937	0	lncRNA	49634-1_{1..1262}	"gi|374088166|ref|NR_046173.1| Homo sapiens uncharacterized LOC254896 (LOC254896), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374088166|ref|NR_046173.1| Homo sapiens uncharacterized LOC254896 (LOC254896), non-coding RNA"	Chr8	 22941868	 22943129	+	254896	NR_046173.1	NA	NA	NA	NA	NA	inter
CUST_29441_PI429285431	5.0806947	P	5.215159	P	0.911008045341819	0	lncRNA	31197-1_{1..283}	n332828|AF069135|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000065645|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000065645|-1.3760700|-0.3446229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332828|AF069135|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000065645|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000065645|-1.3760700|-0.3446229	chrX	 53452941	 53453223	+	NA	NA	NA	NA	SMC1A	NA	chrX:53442941-53449618	inner
CUST_36897_PI429285431	1.1888477	A	0.92225945	A	1.2029596482858	0	lncRNA	38057-1_{1..890}	n345370|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_919|NULL|-1.3451000|-0.2430091	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345370|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_919|NULL|-1.3451000|-0.2430091	chr19	 12105581	 12106470	-	NA	NA	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10"	NA	inter
CUST_11590_PI429285431	0.9147309	A	1.4967784	A	0.668015044777593	0	lncRNA	13170-1_{1..1183}	lnc-DFNA5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DFNA5-2:2	chr7	 24236517	 24237699	-	lnc-DFNA5-2	lnc-DFNA5-2:2	XLOC_006377	linc-TRA2A-1	NA	NA	NA	inter
CUST_28008_PI429285431	1.3735211	A	0.9084853	A	1.38035160593994	0	lncRNA	29618-1_{1..717}	n325264|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328291|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328291|-1.4187200|-0.4151781	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325264|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328291|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328291|-1.4187200|-0.4151781	chr2	 67341438	 67342154	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9634_PI429285431	1.7881926	A	1.4285092	A	1.28314428014135	0	lncRNA	11151-1_{1..1424}	lnc-MKI67IP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MKI67IP-2:1	chr2	123565895	123567318	-	lnc-MKI67IP-2	lnc-MKI67IP-2:1	XLOC_002302	linc-MKI67IP-2	NA	NA	NA	inter
CUST_32884_PI429285431	0.9427848	A	0.91953284	A	1.01624761042976	0	lncRNA	34511-1_{1..478}	n339550|AF086237|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1992|NULL|-1.2758800|-0.5104529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339550|AF086237|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1992|NULL|-1.2758800|-0.5104529	chr3	130396512	130396989	+	NA	NA	NA	NA	PIK3R4	NA	chr3:130397778-130406981	inter
CUST_3348_PI429285431	3.7491395	P	4.2061524	P	0.728493043027488	0	lncRNA	3323-1_{1..559}	"transcript_id ""ENST00000522882.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522882.1"" | genecode_v17"	chr8	142069431	142069989	+	ENSG00000253266.1	ENST00000522882.1	RP11-128L5.1	RP11-128L5.1-002	NA	NA	NA	inter
CUST_6999_PI429285431	0.91536117	A	0.90980595	A	1.00385800810773	0	lncRNA	6947-1_{1..324}	"transcript_id ""ENST00000460077.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000460077.1"" | genecode_v17"	chr22	 44965931	 44966254	+	ENSG00000187012.6	ENST00000460077.1	LINC00207	LINC00207-002	NA	NA	NA	inter
CUST_24839_PI429285431	1.3180301	A	0.9217571	A	1.3161035466625	0	lncRNA	26379-1_{1..526}	lnc-RP11-43D2.2.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-43D2.2.1-4:1	chr5	124068940	124069465	+	lnc-RP11-43D2.2.1-4	lnc-RP11-43D2.2.1-4:1	ENSG00000251274.1	RP11-436H11.4	ZNF608	NA	chr5:124058940-124079465	inner
CUST_45997_PI429285431	5.3813257	P	5.5293784	P	0.902467760745064	0	lncRNA	50285-1_{1..3000}	"gi|219881534|ref|NR_002774.3| Homo sapiens 5-hydroxytryptamine (serotonin) receptor 7 pseudogene 1 (HTR7P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219881534|ref|NR_002774.3| Homo sapiens 5-hydroxytryptamine (serotonin) receptor 7 pseudogene 1 (HTR7P1), non-coding RNA"	Chr12	 13153376	 13156375	+	93164	NR_002774.3	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70"	NA	inter
CUST_51363_PI429285431	1.2585535	A	0.91839194	A	1.26589834748032	0	lncRNA	54959-1_{1..895}	hg19_lincRNAsTranscripts_TCONS_l2_00009251 range=chr15:85080633-85114132 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009251 range=chr15:85080633-85114132 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 85080633	 85081527	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9683_PI429285431	1.1198175	A	0.92538023	A	1.14427774261423	0	lncRNA	11200-1_{1..483}	lnc-STIL-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STIL-1:2	chr1	 47873992	 47874474	-	lnc-STIL-1	lnc-STIL-1:2	XLOC_000822	linc-STIL-2	FOXE3	NA	chr1:47881744-47883724	inter
CUST_6021_PI429285431	2.7054853	A	2.906901	P	0.869696721072729	0	lncRNA	5947-1_{1..504}	"transcript_id ""ENST00000571113.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000571113.1"" | genecode_v17"	chr17	 80876158	 80876661	+	ENSG00000262663.1	ENST00000571113.1	RP11-497H17.1	RP11-497H17.1-001	TBCD	NA	chr17:80866158-80886661	inner
CUST_40821_PI429285431	1.1228881	A	1.7203074	A	0.660935182691321	0	lncRNA	41524-1_{1..1939}	n410589|NR_037852|lncRNA|Homosapiens||RefGeneNoncode|NR_037852||0.1162180|-0.2486972	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410589|NR_037852|lncRNA|Homosapiens||RefGeneNoncode|NR_037852||0.1162180|-0.2486972	chr6	  2783576	  2785514	-	NA	NA	NA	NA	WRNIP1	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_WRNIP1:range=chr6:2765857-27855165'pad=0,hg19_refFlat_WRNIP1:range=chr6:2765857-27855165'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30chr6:2773576-2785979"	NA	inner
CUST_35676_PI429285431	9.411478	P	11.051962	P	0.32074885047662	0	lncRNA	37096-1_{1..2351}	n342835|BC071752|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5338|NULL|14.1391000|-0.1406559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342835|BC071752|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5338|NULL|14.1391000|-0.1406559	chr8	 24771273	 24773623	+	NA	NA	NA	NA	NEFM	NA	chr8:24771274-24776606	inner
CUST_11823_PI429285431	0.9151668	A	0.9130576	A	1.00146305525582	0	lncRNA	13405-1_{1..339}	lnc-CPA4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPA4-1:1	chr7	129971267	129971605	+	lnc-CPA4-1	lnc-CPA4-1:1	XLOC_006247	linc-CPA5	CPA4	NA	chr7:129961267-129964020	inter
CUST_2796_PI429285431	3.3601766	P	3.291893	P	1.04846855958279	0	lncRNA	2780-1_{1..575}	"transcript_id ""ENST00000433356.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433356.1"" | genecode_v17"	chr7	 31454259	 31454833	-	ENSG00000231418.1	ENST00000433356.1	AC006380.3	AC006380.3-001	NA	NA	NA	inter
CUST_592_PI429285431	3.5381448	P	3.7045612	P	0.891053277202468	0	lncRNA	584-1_{1..613}	"transcript_id ""ENST00000435108.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435108.1"" | genecode_v17"	chr1	223317391	223318003	+	ENSG00000236846.1	ENST00000435108.1	RP11-239E10.2	RP11-239E10.2-001	TLR5	NA	chr1:223307391-223316624	inter
CUST_22171_PI429285431	0.90738434	A	0.89652514	A	1.00755542311649	0	lncRNA	23773-1_{1..468}	lnc-GLIPR1L1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLIPR1L1-1:4	chr12	 75688823	 75689290	+	lnc-GLIPR1L1-1	lnc-GLIPR1L1-1:4	ENSG00000254451.2	RP11-560G2.1	CAPS2	NA	chr12:75678823-75698892	inner
CUST_30222_PI429285431	4.775468	P	4.317888	P	1.37323639615855	0	lncRNA	31997-1_{1..408}	n335076|AJ616234|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249231|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249231|1.6252500|-0.1570704	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335076|AJ616234|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249231|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249231|1.6252500|-0.1570704	chr12	 12870780	 12871187	+	NA	NA	NA	NA	APOLD1	NA	chr12:12878851-12881188	inner
CUST_9871_PI429285431	6.863796	P	7.1577444	P	0.815666666273081	0	lncRNA	11394-1_{1..240}	lnc-KIAA1704-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-KIAA1704-2:1	chr13	 45657173	 45657412	+	lnc-KIAA1704-2	lnc-KIAA1704-2:1	XLOC_010373	linc-GTF2F2-1	NA	NA	NA	inter
CUST_36488_PI429285431	1.1239854	A	0.9204016	A	1.15155538468089	0	lncRNA	37690-1_{1..473}	n344990|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_539|NULL|-1.3391300|-0.3432595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344990|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_539|NULL|-1.3391300|-0.3432595	chr8	  6657195	  6657667	-	NA	NA	NA	NA	XKR5	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50chr8:6666038-6668917"	NA	inter
CUST_13279_PI429285431	0.9171516	A	0.9202886	A	0.997827959595638	0	lncRNA	14910-1_{1..773}	lnc-MARK1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MARK1-4:1	chr1	220554215	220554987	+	lnc-MARK1-4	lnc-MARK1-4:1	XLOC_000569	linc-MARK1-3	NA	NA	NA	inter
CUST_18425_PI429285431	0.95570725	A	1.0413613	A	0.942357218672208	0	lncRNA	20149-1_{1..468}	lnc-SGCA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SGCA-1:1	chr17	 48223390	 48223857	+	lnc-SGCA-1	lnc-SGCA-1:1	ENSG00000236472	AC002401.1	PPP1R9B	"hg19_refFlat_PPP1R9B:range=chr17:48212696-482278745'pad=0,hg19_refFlat_PPP1R9B:range=chr17:48212696-482278745'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70chr17:48213390-48227877"	NA	inner
CUST_39032_PI429285431	4.2785883	P	4.8180285	P	0.688037832328753	0	lncRNA	40012-1_{1..3000}	n385408|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xvf.2||-1.1932800|-0.2976092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n385408|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xvf.2||-1.1932800|-0.2976092	chr8	 65291705	 65294704	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22759_PI429285431	1.2649868	A	0.9183233	A	1.27161637522794	0	lncRNA	24342-1_{1..573}	lnc-AC110373.1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC110373.1-6:1	chr4	121086645	121087217	+	lnc-AC110373.1-6	lnc-AC110373.1-6:1	ENSG00000250938.1	RP11-679C8.2	NA	NA	NA	inter
CUST_2881_PI429285431	1.1736271	A	0.91005456	A	1.20044769090663	0	lncRNA	2862-1_{1..578}	"transcript_id ""ENST00000471553.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000471553.1"" | genecode_v17"	chr7	 89748613	 89749190	-	ENSG00000238358.2	ENST00000471553.1	RP5-1121E10.2	RP5-1121E10.2-001	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-32.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70"	NA	inter
CUST_11172_PI429285431	0.91889924	A	0.9260453	A	0.995058975877767	0	lncRNA	12729-1_{1..644}	lnc-GABRB3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GABRB3-2:2	chr15	 26704487	 26705130	-	lnc-GABRB3-2	lnc-GABRB3-2:2	XLOC_011407	linc-ATP10A-1	NA	NA	NA	inter
CUST_50926_PI429285431	1.4659175	A	1.7589612	A	0.816178323301021	0	lncRNA	54567-1_{1..682}	hg19_lincRNAsTranscripts_TCONS_l2_00005567 range=chr12:27274886-27288320 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005567 range=chr12:27274886-27288320 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 27274886	 27275567	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2132_PI429285431	1.4432423	A	1.1176004	A	1.2532219120944	0	lncRNA	2123-1_{1..517}	"transcript_id ""ENST00000503577.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503577.1"" | genecode_v17"	chr5	 33229841	 33230357	+	ENSG00000251443.1	ENST00000503577.1	RP11-113I22.1	RP11-113I22.1-001	NA	NA	NA	inter
CUST_3842_PI429285431	2.314735	A	2.0650735	A	1.18892812368724	0	lncRNA	3809-1_{1..604}	"transcript_id ""ENST00000423232.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423232.1"" | genecode_v17"	chr10	134774844	134775447	-	ENSG00000224758.1	ENST00000423232.1	RP13-137A17.5	RP13-137A17.5-001	NA	NA	NA	inter
CUST_16321_PI429285431	2.1390145	A	3.0620484	A	0.527398765736032	0	lncRNA	18025-3_{6001..9000}	lnc-NAP1L2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NAP1L2-1:7	chrX	 73067217	 73070216	-	lnc-NAP1L2-1	lnc-NAP1L2-1:7	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70"	NA	inter
CUST_41411_PI429285431	1.105616	A	1.9375829	A	0.56176283998925	0	lncRNA	42543-1_{1..83}	ENST00000585119 ncrna:miRNA chromosome:GRCh37:1:235353349:235353431:-1 gene:ENSG00000263439 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585119 ncrna:miRNA chromosome:GRCh37:1:235353349:235353431:-1 gene:ENSG00000263439 gene_biotype:miRNA transcript_biotype:miRNA	chr1	235353349	235353431	-	ENSG00000263439	ENST00000585119	NA	NA	ARID4B	NA	chr1:235343349-235363431	inner
CUST_550_PI429285431	6.342827	P	6.4149046	P	0.951267107990049	0	lncRNA	542-1_{1..285}	"transcript_id ""ENST00000567538.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567538.1"" | genecode_v17"	chr1	208800086	208800370	-	ENSG00000259815.1	ENST00000567538.1	RP11-565N2.2	RP11-565N2.2-001	NA	NA	NA	inter
CUST_25995_PI429285431	5.142081	P	5.432878	P	0.817450342916607	0	lncRNA	27514-1_{1..392}	lnc-AC016251.1-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC016251.1-6:2	chr15	 97324852	 97325243	-	lnc-AC016251.1-6	lnc-AC016251.1-6:2	ENSG00000259282.1	RP11-143C19.1	SPATA8	NA	chr15:97326676-97328845	inter
CUST_3591_PI429285431	0.91793036	A	0.9048116	A	1.00913470053658	0	lncRNA	3561-1_{1..430}	"transcript_id ""ENST00000426811.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426811.1"" | genecode_v17"	chr10	  3574286	  3574715	-	ENSG00000236892.1	ENST00000426811.1	RP11-482E14.2	RP11-482E14.2-001	NA	NA	NA	inter
CUST_15950_PI429285431	0.8987775	A	0.8935945	A	1.00359904289394	0	lncRNA	17647-1_{1..410}	lnc-CYP24A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CYP24A1-1:1	chr20	 52904265	 52904674	-	lnc-CYP24A1-1	lnc-CYP24A1-1:1	XLOC_013803	linc-CYP24A1-3	NA	NA	NA	inter
CUST_34885_PI429285431	6.0867395	P	6.491849	P	0.755178972811906	0	lncRNA	36310-1_{1..1326}	n341800|AK130575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4278|NULL|1.1236100|-0.1426039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341800|AK130575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4278|NULL|1.1236100|-0.1426039	chr9	136741068	136742393	-	NA	NA	NA	NA	VAV2	NA	chr9:136731068-136752402	inner
CUST_41912_PI429285431	0.9147532	A	0.9108388	A	1.00271693953212	0	lncRNA	43648-1_{1..79}	ENST00000577728 ncrna:miRNA chromosome:GRCh37:13:52126725:52126803:1 gene:ENSG00000266611 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577728 ncrna:miRNA chromosome:GRCh37:13:52126725:52126803:1 gene:ENSG00000266611 gene_biotype:miRNA transcript_biotype:miRNA	chr13	 52126725	 52126803	+	ENSG00000266611	ENST00000577728	NA	NA	NA	NA	NA	inter
CUST_25333_PI429285431	1.6212635	A	1.1199274	A	1.41552389194217	0	lncRNA	26864-2_{3001..3617}	lnc-ARMCX5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ARMCX5-1:1	chrX	101829349	101829965	+	lnc-ARMCX5-1	lnc-ARMCX5-1:1	ENSG00000196970.3	NXF4	NA	NA	NA	inter
CUST_24134_PI429285431	0.925418	A	0.911331	A	1.00981219127778	0	lncRNA	25686-1_{1..1065}	lnc-ANKRD20A3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD20A3-2:1	chr9	 43091403	 43092467	-	lnc-ANKRD20A3-2	lnc-ANKRD20A3-2:1	ENSG00000176057.5	RP11-327I22.2	ANKRD20A3	NA	chr9:43081403-43101857	inner
CUST_2468_PI429285431	4.0166826	P	4.232836	P	0.860857649530911	0	lncRNA	2460-1_{1..361}	"transcript_id ""ENST00000602854.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602854.1"" | genecode_v17"	chr6	  3832167	  3832527	+	ENSG00000238158.2	ENST00000602854.1	RP11-420L9.4	RP11-420L9.4-003	NA	NA	NA	inter
LNCA_21_P0002935	5.4178395	P	6.4345	P	0.494259122836891	0	lncRNA	TCONS_00005961	NA	NA	NA	NA	XLOC_002592	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002592), lincRNA [TCONS_00005961]"	chr3:18627227-18628393	hs|3p24.3	Agilent_HUMAN_G3V2	TCONS_00005961	TCONS_00005961	chr3	 18627227	 18628393	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17363_PI429285431	3.7523117	P	4.0767765	P	0.798594587939735	0	lncRNA	19083-1_{1..1138}	lnc-PLEC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLEC-1:1	chr8	145081717	145082854	-	lnc-PLEC-1	lnc-PLEC-1:1	XLOC_007255	linc-PARP10-2	SPATC1	NA	chr8:145086582-145092072	inter
CUST_5748_PI429285431	0.898579	A	0.89387196	A	1.00326799981072	0	lncRNA	5673-1_{1..302}	"transcript_id ""ENST00000582895.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582895.1"" | genecode_v17"	chr17	 16707941	 16708242	+	ENSG00000264729.1	ENST00000582895.1	RP11-219A15.2	RP11-219A15.2-001	NA	NA	NA	inter
CUST_15475_PI429285431	1.3385808	A	1.0881257	A	1.18958231108649	0	lncRNA	17163-1_{1..242}	lnc-ZFP64-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP64-4:3	chr20	 51233279	 51233520	-	lnc-ZFP64-4	lnc-ZFP64-4:3	XLOC_013798	linc-ZFP64-6	NA	NA	NA	inter
CUST_2487_PI429285431	3.9125345	P	3.2412465	P	1.59249406966771	0	lncRNA	2479-1_{1..381}	"transcript_id ""ENST00000443504.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443504.1"" | genecode_v17"	chr6	 19290550	 19290930	-	ENSG00000231662.1	ENST00000443504.1	RP11-686D16.1	RP11-686D16.1-001	NA	NA	NA	inter
CUST_11030_PI429285431	1.6377261	A	1.7072258	A	0.952968412598181	0	lncRNA	12576-1_{1..727}	lnc-RP1-32I10.10.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP1-32I10.10.1-2:1	chr22	 44710301	 44711027	+	lnc-RP1-32I10.10.1-2	lnc-RP1-32I10.10.1-2:1	XLOC_014263	linc-PRR5-4	KIAA1644	NA	chr22:44700301-44708731	inter
CUST_51048_PI429285431	1.5641097	A	1.526602	A	1.02633926168788	0	lncRNA	54690-1_{1..696}	hg19_lincRNAsTranscripts_TCONS_l2_00007068 range=chr13:21897564-21921662 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007068 range=chr13:21897564-21921662 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 21897564	 21898259	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014877	4.538719	P	4.8798037	P	0.789447537217547	0	lncRNA	XR_132786	XR_132786	XR_132786	NA	NA	LOC100652993	uncharacterized LOC100652993	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652993 (LOC100652993), miscRNA [XR_132786]"	chr10:75010724-75011552	hs|10q22.2	Agilent_HUMAN_G3V2	XR_132786	XR_132786	chr10	 75010724	 75011552	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5150_PI429285431	0.9079907	A	0.9020357	A	1.00413622211189	0	lncRNA	5090-1_{1..766}	"transcript_id ""ENST00000557883.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000557883.2"" | genecode_v17"	chr15	 38296947	 38297712	+	ENSG00000259225.2	ENST00000557883.2	RP11-1008C21.1	RP11-1008C21.1-002	NA	NA	NA	inter
CUST_48871_PI429285431	3.6097956	P	4.066237	P	0.728781680774953	0	lncRNA	52707-1_{1..368}	hg19_lincRNAsTranscripts_TCONS_l2_00018492 range=chr3:31496782-31497222 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018492 range=chr3:31496782-31497222 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	 31496782	 31497149	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28341_PI429285431	0.88662356	A	0.88609695	A	1.00036508486402	0	lncRNA	29987-1_{1..335}	n325647|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045601|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045601|-1.2184700|-0.3229782	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325647|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045601|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045601|-1.2184700|-0.3229782	chr13	 98941537	 98941871	-	NA	NA	NA	NA	FARP1	NA	chr13:98931537-98952752	inner
CUST_42558_PI429285431	7.208743	P	7.1755543	P	1.0232713016683	0	lncRNA	45378-1_{1..128}	ENST00000391061 ncrna:snoRNA chromosome:GRCh37:5:74178481:74178608:-1 gene:ENSG00000212363 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391061 ncrna:snoRNA chromosome:GRCh37:5:74178481:74178608:-1 gene:ENSG00000212363 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	 74178481	 74178608	-	ENSG00000212363	ENST00000391061	NA	NA	NA	NA	NA	inter
LNCA_21_P0004992	9.719131	P	9.586487	P	1.0963010315309	0	lncRNA	TCONS_00012054	NA	NA	NA	NA	XLOC_005586	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005586), lincRNA [TCONS_00012054]"	chr6:3926402-3925757	hs|6p25.2	Agilent_HUMAN_G3V2	TCONS_00012054	TCONS_00012054	chr6	  3925757	  3926402	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35650_PI429285431	2.1719177	A	1.6646639	A	1.42134206475705	0	lncRNA	37067-1_{1..3000}	n342799|BC002644|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5302|NULL|1.3530400|-0.3560930	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n342799|BC002644|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5302|NULL|1.3530400|-0.3560930	chr7	 10489446	 10492445	-	NA	NA	NA	NA	NA	"hg19_refFlat_HSPA8:range=chr11:122928442-1229320325'pad=0,hg19_refFlat_HSPA8:range=chr11:122928442-1229320325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10"	NA	inter
CUST_38079_PI429285431	2.4548101	A	2.5628135	A	0.927871289754053	0	lncRNA	39155-1_{1..1748}	n381067|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001azk.2||3.2755400|-0.0832870	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381067|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001azk.2||3.2755400|-0.0832870	chr1	 16972863	 16974610	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48489_PI429285431	0.91349596	A	2.005823	A	0.469004269096839	0	lncRNA	52342-1_{1..289}	hg19_lincRNAsTranscripts_TCONS_l2_00000923 range=chr1:241577019-241596639 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000923 range=chr1:241577019-241596639 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	241577019	241577307	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24943_PI429285431	0.9152712	A	1.1239216	A	0.865346359591339	0	lncRNA	26483-1_{1..266}	lnc-DNAI1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DNAI1-2:4	chr9	 34570014	 34570279	+	lnc-DNAI1-2	lnc-DNAI1-2:4	ENSG00000237159.1	RP11-296L22.4	CNTFR	NA	chr9:34560014-34580123	inter
CUST_13259_PI429285431	0.9107069	A	0.9086469	A	1.00142890310254	0	lncRNA	14889-1_{1..491}	lnc-CPEB2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPEB2-7:1	chr4	 13520520	 13521010	+	lnc-CPEB2-7	lnc-CPEB2-7:1	XLOC_003461	linc-CPEB2-6	NA	NA	NA	inter
CUST_7841_PI429285431	0.9217976	A	0.91001725	A	1.00819894514319	0	lncRNA	9465-1_{1..1554}	lnc-TMEM192-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM192-1:1	chr4	166664171	166665724	-	lnc-TMEM192-1	lnc-TMEM192-1:1	ENSG00000248358	XLOC_004147	NA	"hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.01;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.01;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20"	NA	inter
LNCA_21_P0003260	0.9245009	A	0.9119171	A	1.00876057668693	0	lncRNA	THC2587769	NA	NA	NA	NA	XLOC_002916	NA	NA	THC2587769	NA	"BROAD Institute lincRNA (XLOC_002916), lincRNA [TCONS_00007041]"	chr3:169683957-169684016	hs|3q26.2	Agilent_HUMAN_G3V2	THC2587769	THC2587769	chr3	169683957	169684016	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14374_PI429285431	6.747516	P	7.1204133	P	0.772230103273706	0	lncRNA	16034-1_{1..2729}	lnc-GPR27-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR27-2:1	chr3	 72043560	 72046288	+	lnc-GPR27-2	lnc-GPR27-2:1	XLOC_002702	linc-GXYLT2-2	NA	NA	NA	inter
CUST_29877_PI429285431	0.9072473	A	0.90018654	A	1.00490614178049	0	lncRNA	31640-1_{1..219}	n333881|L35486|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193228|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193228|-0.1640870|-0.3090505	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333881|L35486|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193228|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193228|-0.1640870|-0.3090505	chr4	 74347480	 74347698	+	NA	NA	NA	NA	AFM	NA	chr4:74347462-74360046	inner
CUST_21475_PI429285431	1.3565167	A	2.1184497	A	0.589705681934356	0	lncRNA	23093-1_{1..432}	lnc-RIMS3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RIMS3-3:1	chr1	 40980472	 40980903	-	lnc-RIMS3-3	lnc-RIMS3-3:1	ENSG00000227278.1	RP11-656D10.5	DEM1	"hg19_refFlat_EXO5:range=chr1:40980217-409813385'pad=0,hg19_refFlat_EXO5:range=chr1:40980217-409813385'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60chr1:40974433-40982228"	NA	inner
CUST_16626_PI429285431	0.94833744	A	1.48748	A	0.688179794906258	0	lncRNA	18328-1_{1..666}	lnc-C1orf87-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf87-1:1	chr1	 60433609	 60434274	-	lnc-C1orf87-1	lnc-C1orf87-1:1	XLOC_000854	linc-CYP2J2	NA	NA	NA	inter
CUST_3261_PI429285431	2.817638	A	3.6823015	P	0.549174483624057	0	lncRNA	3239-1_{1..634}	"transcript_id ""ENST00000577661.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577661.1"" | genecode_v17"	chr8	107282464	107283097	+	ENSG00000254615.2	ENST00000577661.1	RP11-395G23.3	RP11-395G23.3-002	OXR1	NA	chr8:107272464-107294434	inner
CUST_32728_PI429285431	5.3943205	P	5.633837	P	0.84702913531699	0	lncRNA	34369-1_{1..3000}	n339357|D87452|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1789|NULL|6.4536400|-0.1952810	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339357|D87452|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1789|NULL|6.4536400|-0.1952810	chr3	 49761727	 49764726	-	NA	NA	NA	NA	IP6K1	NA	chr3:49761728-49823973	inner
CUST_9056_PI429285431	5.13142	P	5.0025396	P	1.09344480671228	0	lncRNA	10580-1_{1..483}	lnc-RASA1-7:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASA1-7:9	chr5	 88238833	 88239315	+	lnc-RASA1-7	lnc-RASA1-7:9	ENSG00000248309	CTC-454M9.1	NA	NA	NA	inter
CUST_5409_PI429285431	7.3111525	P	7.478669	P	0.890374080253205	0	lncRNA	5343-1_{1..1207}	"transcript_id ""ENST00000571404.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000571404.1"" | genecode_v17"	chr16	  3126912	  3128118	-	ENSG00000262370.1	ENST00000571404.1	RP11-473M20.9	RP11-473M20.9-002	ZSCAN10	NA	chr16:3138895-3142861	inter
CUST_41503_PI429285431	0.8946115	A	0.8944149	A	1.00013628202125	0	lncRNA	42723-1_{1..107}	ENST00000362155 ncrna:miRNA chromosome:GRCh37:14:101531918:101532024:1 gene:ENSG00000199025 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362155 ncrna:miRNA chromosome:GRCh37:14:101531918:101532024:1 gene:ENSG00000199025 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101531918	101532024	+	ENSG00000199025	ENST00000362155	NA	NA	NA	NA	NA	inter
CUST_40516_PI429285431	1.741986	A	1.464436	A	1.21213467561048	0	lncRNA	41281-1_{1..3000}	n409548|NR_033933|lncRNA|Homosapiens||RefGeneNoncode|NR_033933||9.3667000|-0.2264760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409548|NR_033933|lncRNA|Homosapiens||RefGeneNoncode|NR_033933||9.3667000|-0.2264760	chr15	 30427989	 30430988	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9842_PI429285431	1.6754326	A	1.089204	A	1.50131696751447	0	lncRNA	11362-1_{1..336}	lnc-MIS18BP1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MIS18BP1-1:6	chr14	 46181102	 46181437	-	lnc-MIS18BP1-1	lnc-MIS18BP1-1:6	XLOC_011012	linc-C14orf106	NA	NA	NA	inter
CUST_44419_PI429285431	4.92632	P	2.801639	A	4.36106653139431	0	lncRNA	49032-1_{1..1091}	"gi|195539370|ref|NR_003135.2| Homo sapiens centrosomal protein 170kDa pseudogene 1 (CEP170P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|195539370|ref|NR_003135.2| Homo sapiens centrosomal protein 170kDa pseudogene 1 (CEP170P1), non-coding RNA"	NA	NA	NA	NA	NA	NR_003135.2	NA	NA	NA	NA	NA	Unknown
CUST_26231_PI429285431	0.9270337	A	1.0797507	A	0.899554752088667	0	lncRNA	27738-1_{1..638}	lnc-PCSK9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PCSK9-2:1	chr1	 55699285	 55699922	+	lnc-PCSK9-2	lnc-PCSK9-2:1	ENSG00000231090.1	RP11-101C11.1	NA	NA	NA	inter
CUST_1157_PI429285431	4.504604	P	4.7265024	P	0.857436418399001	0	lncRNA	1146-1_{1..510}	"transcript_id ""ENST00000445613.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445613.1"" | genecode_v17"	chr2	173180015	173180524	+	ENSG00000232555.1	ENST00000445613.1	AC104088.1	AC104088.1-001	NA	NA	NA	inter
LNCA_21_P0005453	6.065507	P	6.234681	P	0.889351724483875	0	lncRNA	TCONS_00013655	NA	NA	NA	NA	XLOC_006312	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006312), lincRNA [TCONS_00013655]"	chr7:156776876-156776935	hs|7q36.3	Agilent_HUMAN_G3V2	TCONS_00013655	TCONS_00013655	chr7	156776876	156776935	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49403_PI429285431	0.9284825	A	0.9155137	A	1.00902981213624	0	lncRNA	53212-1_{1..344}	hg19_lincRNAsTranscripts_TCONS_l2_00022646 range=chr5:175547653-175548760 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022646 range=chr5:175547653-175548760 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	175547653	175547996	+	NA	NA	NA	NA	FAM153B	NA	chr5:175537653-175543458	inter
CUST_35435_PI429285431	9.0930395	P	8.583536	P	1.4235601964962	0	lncRNA	36841-1_{1..2833}	n342498|D83542|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4992|NULL|10.9549000|-0.0891584	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342498|D83542|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4992|NULL|10.9549000|-0.0891584	chr16	 89238162	 89240994	+	NA	NA	NA	NA	CDH15	NA	chr16:89238163-89261900	inner
CUST_5287_PI429285431	2.8232095	A	3.405218	P	0.668033103298727	0	lncRNA	5227-1_{1..1835}	"transcript_id ""ENST00000506090.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506090.1"" | genecode_v17"	chr15	 89128802	 89130636	-	ENSG00000249487.2	ENST00000506090.1	RP11-97O12.2	RP11-97O12.2-001	NA	NA	NA	inter
CUST_10313_PI429285431	0.9202441	A	0.9232888	A	0.997891800160879	0	lncRNA	11841-1_{1..787}	lnc-DLEU1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-DLEU1-1:1	chr13	 50640237	 50641023	+	lnc-DLEU1-1	lnc-DLEU1-1:1	XLOC_010389	linc-RNASEH2B-2	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90"	NA	inter
LNCA_21_P0013044	3.4730444	P	3.3885758	P	1.06029712127481	0	lncRNA	TCONS_l2_00024508	NA	NA	NA	NA	XLOC_l2_012788	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012788), lincRNA [TCONS_l2_00024508]"	chr6:160133981-160134040	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_l2_00024508	TCONS_l2_00024508	chr6	160133981	160134040	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25697_PI429285431	1.2488288	A	1.2773936	A	0.980395114428893	0	lncRNA	27225-1_{1..727}	lnc-CASP9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CASP9-2:1	chr1	 15661768	 15662494	-	lnc-CASP9-2	lnc-CASP9-2:1	ENSG00000236045.1	RP3-467K16.7	FHAD1	NA	chr1:15651768-15671960	inner
CUST_8248_PI429285431	0.9177735	A	0.905724	A	1.00838705285286	0	lncRNA	9838-1_{1..2097}	lnc-SYPL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SYPL2-1:1	chr1	109967885	109969981	+	lnc-SYPL2-1	lnc-SYPL2-1:1	ENSG00000250110	AL356735.1	PSMA5	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.39;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70chr1:109957885-109969108"	NA	inner
CUST_17042_PI429285431	2.264043	A	1.6257886	A	1.55644478716211	0	lncRNA	18752-1_{1..665}	lnc-C14orf49-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf49-3:1	chr14	 95992258	 95992922	-	lnc-C14orf49-3	lnc-C14orf49-3:1	XLOC_011112	linc-C14orf49	GLRX5	NA	chr14:96001323-96002377	inter
CUST_24884_PI429285431	0.9331495	A	0.9113811	A	1.01520311430058	0	lncRNA	26425-1_{1..500}	lnc-SFI1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SFI1-1:1	chr22	 31859716	 31860215	+	lnc-SFI1-1	lnc-SFI1-1:1	ENSG00000240591.1	RP11-247I13.11	EIF4ENIF1	"hg19_refFlat_EIF4ENIF1:range=chr22:31835866-318847045'pad=0,hg19_refFlat_EIF4ENIF1:range=chr22:31835866-318847045'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60chr22:31849716-31870042"	NA	inner
CUST_13406_PI429285431	0.92753154	A	0.92616373	A	1.00094854322789	0	lncRNA	15043-1_{1..360}	lnc-PLCXD1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLCXD1-3:3	chrX	   398339	   398698	+	lnc-PLCXD1-3	lnc-PLCXD1-3:3	XLOC_007909	linc-SHOX-2	NA	NA	NA	inter
CUST_10884_PI429285431	2.9694278	A	2.9097776	A	1.04221303222642	0	lncRNA	12425-1_{1..485}	lnc-GIN1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GIN1-1:2	chr5	102589029	102589513	-	lnc-GIN1-1	lnc-GIN1-1:2	XLOC_004942	linc-GIN1-2	C5orf30	NA	chr5:102594442-102599220	inter
CUST_2183_PI429285431	1.9016861	A	2.643671	A	0.597916156458173	0	lncRNA	2175-1_{1..340}	"transcript_id ""ENST00000515199.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515199.1"" | genecode_v17"	chr5	 67827517	 67827856	-	ENSG00000248359.1	ENST00000515199.1	CTC-537E7.2	CTC-537E7.2-001	NA	NA	NA	inter
LNCA_21_P0007468	1.0096824	A	1.0923715	A	0.944295892478699	0	lncRNA	TCONS_00020124	NA	NA	NA	NA	XLOC_009537	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009537), lincRNA [TCONS_00020124]"	chr11:103713669-103712098	hs|11q22.3	Agilent_HUMAN_G3V2	TCONS_00020124	TCONS_00020124	chr11	103712098	103713669	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50574_PI429285431	6.54974	P	6.4791884	P	1.05011810901952	0	lncRNA	54267-1_{1..282}	hg19_lincRNAsTranscripts_TCONS_l2_00030915 range=chrY:27610233-27619704 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030915 range=chrY:27610233-27619704 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrY	 27610233	 27610514	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15859_PI429285431	5.090105	P	5.2527595	P	0.893379775425189	0	lncRNA	17549-1_{1..1329}	lnc-ANTXRL-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANTXRL-1:8	chr10	 47700835	 47702163	+	lnc-ANTXRL-1	lnc-ANTXRL-1:8	XLOC_008480	linc-ANXA8L2-1	NA	NA	NA	inter
CUST_44300_PI429285431	8.861941	P	9.483471	P	0.649981247093892	0	lncRNA	48933-1_{1..1513}	"gi|215276962|ref|NR_024534.1| Homo sapiens asparagine-linked glycosylation 3, alpha-1,3- mannosyltransferase homolog (S. cerevisiae) (ALG3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|215276962|ref|NR_024534.1| Homo sapiens asparagine-linked glycosylation 3, alpha-1,3- mannosyltransferase homolog (S. cerevisiae) (ALG3), transcript variant 2, non-coding RNA"	Chr3	183960117	183961629	-	10195	NR_024534.1	NA	NA	NA	NA	NA	inter
CUST_21284_PI429285431	1.0958226	A	0.9201565	A	1.1294857740473	0	lncRNA	22909-1_{1..564}	lnc-TRAT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRAT1-1:1	chr3	108828816	108829379	+	lnc-TRAT1-1	lnc-TRAT1-1:1	ENSG00000239314.1	MORC1-AS1	MORC1	NA	chr3:108818816-108836993	inner
CUST_14545_PI429285431	2.5416098	A	2.8161833	A	0.826694675525203	0	lncRNA	16213-1_{1..395}	lnc-COX4NB-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COX4NB-2:2	chr16	 86082828	 86083222	-	lnc-COX4NB-2	lnc-COX4NB-2:2	XLOC_012040	linc-COX4NB-3	NA	NA	NA	inter
CUST_49748_PI429285431	1.0475218	A	0.901723	A	1.1063430503894	0	lncRNA	53517-1_{1..1653}	hg19_lincRNAsTranscripts_TCONS_l2_00026543 range=chr7:45763524-45805412 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026543 range=chr7:45763524-45805412 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 45763524	 45765176	-	NA	NA	NA	NA	ADCY1	NA	chr7:45753524-45762715	inter
CUST_35063_PI429285431	3.8237126	P	3.732379	P	1.065354520994	0	lncRNA	36473-1_{1..2482}	n342013|AK054674|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4494|NULL|-0.9657890|-0.2005013	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342013|AK054674|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4494|NULL|-0.9657890|-0.2005013	chr12	108700918	108703399	+	NA	NA	NA	NA	CMKLR1	NA	chr12:108690918-108718328	inner
CUST_39335_PI429285431	11.378539	P	11.569833	P	0.875819817701205	0	lncRNA	40302-1_{1..1362}	n386395|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010jaj.1||6.7360400|-0.2176083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386395|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010jaj.1||6.7360400|-0.2176083	chr5	 79646423	 79647784	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40954_PI429285431	0.922814	A	1.3013358	A	0.76922534310915	0	lncRNA	41630-2_{3001..3373}	n410961|NR_038423|lncRNA|Homosapiens||RefGeneNoncode|NR_038423||-1.2095700|-0.2652545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n410961|NR_038423|lncRNA|Homosapiens||RefGeneNoncode|NR_038423||-1.2095700|-0.2652545	chr1	146856913	146857285	-	NA	NA	NA	NA	BCL9	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30chr1:146890733-146999699"	NA	inter
LNCA_21_P0011121	1.0275359	A	0.9711161	A	1.03988197932734	0	lncRNA	ENST00000427890	NA	NA	NA	NA	XLOC_l2_003626	NA	ENST00000427890	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003626), lincRNA [TCONS_l2_00006714]"	chr13:21836701-21852234	hs|13q12.11	Agilent_HUMAN_G3V2	ENST00000427890	ENST00000427890	chr13	 21836701	 21852234	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37774_PI429285431	7.17458	P	7.3155046	P	0.906937727250712	0	lncRNA	38872-1_{1..696}	n346284|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1834|NULL|-1.3400600|-0.2409505	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346284|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1834|NULL|-1.3400600|-0.2409505	chr16	 87915154	 87915849	-	NA	NA	NA	NA	CA5A	NA	chr16:87921625-87929762	inter
CUST_16769_PI429285431	2.2153146	A	1.3868847	A	1.77575174126717	0	lncRNA	18477-1_{1..231}	lnc-MED10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MED10-1:1	chr5	  6362500	  6362730	-	lnc-MED10-1	lnc-MED10-1:1	XLOC_004724	linc-IRX2-1	MED10	NA	chr5:6372039-6372527	inter
CUST_41389_PI429285431	3.1528194	A	3.3491979	P	0.872738592707877	0	lncRNA	42494-1_{1..95}	ENST00000584551 ncrna:miRNA chromosome:GRCh37:8:27559190:27559284:-1 gene:ENSG00000265075 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584551 ncrna:miRNA chromosome:GRCh37:8:27559190:27559284:-1 gene:ENSG00000265075 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 27559190	 27559284	-	ENSG00000265075	ENST00000584551	NA	NA	NA	NA	NA	inter
CUST_40053_PI429285431	5.7463837	P	4.53032	P	2.32312003541032	0	lncRNA	40906-1_{1..3000}	n407257|NR_026718|lncRNA|Homosapiens||RefGeneNoncode|NR_026718||6.9737300|-0.2577804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n407257|NR_026718|lncRNA|Homosapiens||RefGeneNoncode|NR_026718||6.9737300|-0.2577804	chr17	 18569235	 18572234	-	NA	NA	NA	NA	ZNF286B	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-20.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30chr17:18561742-18585572"	NA	inner
LNCA_21_P0013107	1.0322562	A	0.97013545	A	1.04399930391983	0	lncRNA	TCONS_l2_00024964	NA	NA	NA	NA	XLOC_l2_013153	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013153), lincRNA [TCONS_l2_00024964]"	chr6:147162267-147162208	hs|6q24.3	Agilent_HUMAN_G3V2	TCONS_l2_00024964	TCONS_l2_00024964	chr6	147162208	147162267	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15294_PI429285431	1.1369445	A	1.3546532	A	0.859930100446564	0	lncRNA	16971-1_{1..325}	lnc-P2RY2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-P2RY2-3:1	chr11	 72892217	 72892541	+	lnc-P2RY2-3	lnc-P2RY2-3:1	XLOC_009206	linc-P2RY2-2	NA	NA	NA	inter
CUST_40189_PI429285431	1.2892288	A	0.9315055	A	1.28140213557381	0	lncRNA	41023-1_{1..1833}	n407973|NR_027688|lncRNA|Homosapiens||RefGeneNoncode|NR_027688||5.5479100|-0.1700878	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407973|NR_027688|lncRNA|Homosapiens||RefGeneNoncode|NR_027688||5.5479100|-0.1700878	chr11	 55746178	 55748010	-	NA	NA	NA	NA	OR5F1	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20chr11:55761157-55762101"	NA	inter
CUST_25466_PI429285431	5.8988867	P	5.807767	P	1.06519657878636	0	lncRNA	26996-1_{1..303}	lnc-CREG1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CREG1-2:1	chr1	167427711	167428013	-	lnc-CREG1-2	lnc-CREG1-2:1	ENSG00000233411.1	RP11-104L21.2	CD247	NA	chr1:167417711-167437898	inner
CUST_12149_PI429285431	4.611053	P	4.833014	P	0.857399214170963	0	lncRNA	13749-1_{1..340}	lnc-FOXO6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXO6-1:1	chr1	 41930210	 41930549	+	lnc-FOXO6-1	lnc-FOXO6-1:1	XLOC_000160	linc-GUCA2B	NA	NA	NA	inter
CUST_29471_PI429285431	6.4218626	P	6.6667094	P	0.843905405812094	0	lncRNA	31229-1_{1..268}	n332888|AF086039|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066918|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066918|-1.2793000|-0.7214292	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332888|AF086039|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066918|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066918|-1.2793000|-0.7214292	chrX	 75651474	 75651741	+	NA	NA	NA	NA	MAGEE1	NA	chrX:75648046-75651746	inner
CUST_21402_PI429285431	0.89588577	A	2.2666752	A	0.38667960281792	0	lncRNA	23023-1_{1..606}	lnc-PTPN20C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPN20C-2:1	chr10	 49409271	 49409876	-	lnc-PTPN20C-2	lnc-PTPN20C-2:1	ENSG00000248306.1	RP11-13E1.3	FRMPD2	NA	chr10:49399271-49419697	inner
CUST_31024_PI429285431	1.047583	A	1.5471315	A	0.707328109093572	0	lncRNA	32813-1_{1..608}	n337235|BC121820|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000388413|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000388413|-1.0171100|-0.2021941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337235|BC121820|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000388413|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000388413|-1.0171100|-0.2021941	chr3	195666276	195666883	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46274_PI429285431	4.402582	P	5.0866456	P	0.622409678677991	0	lncRNA	50513-1_{1..2494}	"gi|389616143|ref|NR_047495.1| Homo sapiens long intergenic non-protein coding RNA 565 (LINC00565), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|389616143|ref|NR_047495.1| Homo sapiens long intergenic non-protein coding RNA 565 (LINC00565), non-coding RNA"	Chr13	114629487	114631980	-	100861555	NR_047495.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0010989	0.9212909	A	2.026437	A	0.464855393573556	0	lncRNA	TCONS_l2_00004704	NA	NA	NA	NA	XLOC_l2_002433	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002433), lincRNA [TCONS_l2_00004704]"	chr11:88106464-88132877	hs|11q14.2	Agilent_HUMAN_G3V2	TCONS_l2_00004704	TCONS_l2_00004704	chr11	 88106464	 88132877	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30193_PI429285431	3.6149056	P	4.200402	P	0.666419998458607	0	lncRNA	31967-1_{1..342}	n334955|AJ459855|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248112_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248112_07|-0.7688930|-0.3817717	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334955|AJ459855|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248112_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248112_07|-0.7688930|-0.3817717	chr6	   698398	   698739	-	NA	NA	NA	NA	EXOC2	NA	chr6:688398-693109	inter
CUST_49983_PI429285431	3.4919696	P	3.656109	P	0.892460733540901	0	lncRNA	53723-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026278 range=chr7:150102459-150109699 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026278 range=chr7:150102459-150109699 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	150102459	150105458	+	NA	NA	NA	NA	ZNF775	NA	chr7:150092459-150095719	inter
CUST_1278_PI429285431	5.8922725	P	6.2642984	P	0.772696677677109	0	lncRNA	1269-1_{1..429}	"transcript_id ""ENST00000457178.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457178.1"" | genecode_v17"	chr2	241166977	241167405	-	ENSG00000227479.1	ENST00000457178.1	AC124861.1	AC124861.1-001	NA	NA	NA	inter
CUST_27622_PI429285431	3.3227072	P	3.7696233	P	0.733609333929506	0	lncRNA	29200-1_{1..870}	n324826|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171735|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171735|-1.1968300|-0.3259679	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324826|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171735|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171735|-1.1968300|-0.3259679	chr21	 28833510	 28834379	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11111_PI429285431	1.113973	A	1.2606083	A	0.903354841062586	0	lncRNA	12668-1_{1..305}	lnc-RPS6KA3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPS6KA3-2:1	chrX	 20971624	 20971928	-	lnc-RPS6KA3-2	lnc-RPS6KA3-2:1	XLOC_008128	linc-RPS6KA3-2	NA	"hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30"	NA	inter
CUST_12726_PI429285431	1.6443542	A	0.9165922	A	1.65606810018669	0	lncRNA	14346-1_{1..1303}	lnc-FANCM-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FANCM-5:1	chr14	 46325076	 46326378	+	lnc-FANCM-5	lnc-FANCM-5:1	XLOC_010816	linc-PPIL5-2	NA	NA	NA	inter
CUST_28111_PI429285431	4.6426916	P	4.983675	P	0.78950297086148	0	lncRNA	29733-1_{1..504}	n325383|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324017|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324017|-1.0290200|-0.3117542	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325383|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324017|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324017|-1.0290200|-0.3117542	chr2	 21297561	 21298064	+	NA	NA	NA	NA	NA	"hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10"	NA	inter
CUST_29400_PI429285431	3.45544	P	2.9876375	P	1.38300128792111	0	lncRNA	31154-1_{1..201}	n332752|AF024700|Non-proteincodingtranscript|Homosapiens|NULL|H-invitationalv7.5|HIT000062740|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062740|1.1832100|-0.0853030	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332752|AF024700|Non-proteincodingtranscript|Homosapiens|NULL|H-invitationalv7.5|HIT000062740|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062740|1.1832100|-0.0853030	chr8	146156258	146156458	-	NA	NA	NA	NA	ZNF16	NA	chr8:146155744-146166459	inner
CUST_17737_PI429285431	5.928565	P	6.180568	P	0.839729746773405	0	lncRNA	19468-2_{3001..6000}	lnc-IMPAD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IMPAD1-1:1	chr8	 58130740	 58133739	-	lnc-IMPAD1-1	lnc-IMPAD1-1:1	XLOC_007089	linc-IMPAD1-1	NA	NA	NA	inter
CUST_9008_PI429285431	4.816388	P	5.0510783	P	0.849867418626776	0	lncRNA	10536-1_{1..1359}	lnc-C16orf52-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C16orf52-1:2	chr16	 22098378	 22099736	+	lnc-C16orf52-1	lnc-C16orf52-1:2	ENSG00000185716	C16orf52	C16orf52	NA	chr16:22088378-22095975	inter
LNCA_21_P0004273	3.1136513	P	4.311495	P	0.435926344992902	0	lncRNA	TCONS_00010009	NA	NA	NA	NA	XLOC_004448	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004448), lincRNA [TCONS_00010009]"	chr5:82687150-82694050	hs|5q14.2	Agilent_HUMAN_G3V2	TCONS_00010009	TCONS_00010009	chr5	 82687150	 82694050	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35660_PI429285431	0.89705575	A	0.89334786	A	1.00257341907232	0	lncRNA	37081-1_{1..714}	n342819|AJ011910|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5322|NULL|-1.0171800|-0.4715375	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342819|AJ011910|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5322|NULL|-1.0171800|-0.4715375	chr7	102802393	102803106	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21172_PI429285431	0.90613186	A	0.90353	A	1.00180509915678	0	lncRNA	22796-1_{1..550}	lnc-ZBTB25-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZBTB25-2:1	chr14	 64914771	 64915320	-	lnc-ZBTB25-2	lnc-ZBTB25-2:1	ENSG00000258824.1	CTD-2555O16.2	MTHFD1	"hg19_refFlat_MTHFD1:range=chr14:64855146-649250215'pad=0,hg19_refFlat_MTHFD1:range=chr14:64855146-649250215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80chr14:64904771-64925275"	NA	inner
CUST_34116_PI429285431	3.3383045	P	4.2176633	P	0.543608982403505	0	lncRNA	35639-1_{1..1573}	n340949|BC033833|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3414|NULL|-0.9222300|-0.2001982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340949|BC033833|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3414|NULL|-0.9222300|-0.2001982	chr11	  3687234	  3688806	+	NA	NA	NA	NA	ART1	"hg19_refFlat_CHRNA10:range=chr11:3687337-36925425'pad=0,hg19_refFlat_CHRNA10:range=chr11:3687337-36925425'pad=0 3'pad=0 strand=- repeatMasking=none,-105.30chr11:3677234-3685646"	NA	inner
CUST_25571_PI429285431	0.90742946	A	0.9048687	A	1.00177655978988	0	lncRNA	27100-1_{1..574}	lnc-GTDC1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTDC1-5:1	chr2	144238299	144238872	-	lnc-GTDC1-5	lnc-GTDC1-5:1	ENSG00000228655.2	AC096558.1	ARHGAP15	NA	chr2:144228299-144248358	inner
CUST_19994_PI429285431	6.814546	P	7.393461	P	0.669467070660355	0	lncRNA	21647-1_{1..680}	lnc-ARHGAP10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARHGAP10-1:1	chr4	149129702	149130381	+	lnc-ARHGAP10-1	lnc-ARHGAP10-1:1	ENSG00000250354.1	RP11-76G10.1	NR3C2	NA	chr4:149119702-149140031	inner
CUST_37437_PI429285431	0.9167206	A	0.91737074	A	0.999549458816205	0	lncRNA	38537-4_{9001..12000}	n345886|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1435|NULL|-1.6761900|-0.2983266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n345886|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1435|NULL|-1.6761900|-0.2983266	chr12	105955681	105958680	+	NA	NA	NA	NA	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_49289_PI429285431	6.381941	P	6.6130333	P	0.851989585180476	0	lncRNA	53108-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00022139 range=chr5:1614371-1625423 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022139 range=chr5:1614371-1625423 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	  1614371	  1617370	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9850_PI429285431	1.406649	A	1.2604396	A	1.10665796732818	0	lncRNA	11370-1_{1..296}	lnc-VSTM2B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VSTM2B-4:1	chr19	 29710360	 29710655	+	lnc-VSTM2B-4	lnc-VSTM2B-4:1	XLOC_013029	linc-VSTM2B-4	UQCRFS1	NA	chr19:29700360-29704136	inter
CUST_23533_PI429285431	5.049444	P	2.670692	A	5.20086647779527	0	lncRNA	25100-1_{1..215}	lnc-SKA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SKA2-2:1	chr17	 57480594	 57480808	-	lnc-SKA2-2	lnc-SKA2-2:1	ENSG00000266002.1	RP11-567L7.5	YPEL2	NA	chr17:57470594-57479095	inter
CUST_21079_PI429285431	3.2102597	A	3.5282989	P	0.802159370287743	0	lncRNA	22705-1_{1..786}	lnc-SHISA9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHISA9-2:1	chr16	 12851346	 12852131	+	lnc-SHISA9-2	lnc-SHISA9-2:1	ENSG00000260378.1	CTD-2583P5.1	CPPED1	NA	chr16:12841346-12861692	inner
LNCA_21_P0005131	0.96099293	A	0.9205655	A	1.02841847301913	0	lncRNA	XR_110168	XR_110168	XR_110168	NA	Hs.126515	LOC100507136	uncharacterized LOC100507136	NA	THC2725158	NA	"PREDICTED: Homo sapiens hypothetical LOC100507136 (LOC100507136), miscRNA [XR_110168]"	chr6:126398872-126398931	hs|6q22.32	Agilent_HUMAN_G3V2	XR_110168	XR_110168	chr6	126398872	126398931	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36312_PI429285431	1.2293671	A	1.3017169	A	0.951087644920055	0	lncRNA	37544-1_{1..1411}	n344839|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_388|NULL|-1.3208700|-0.3971873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344839|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_388|NULL|-1.3208700|-0.3971873	chr5	 98265712	 98267122	+	NA	NA	NA	NA	CHD1	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10chr5:98255712-98262238"	NA	inter
CUST_28876_PI429285431	0.9156563	A	0.9078452	A	1.00542892543801	0	lncRNA	30590-1_{1..451}	n326297|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086267|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086267|-0.9563380|-0.3708433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326297|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086267|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086267|-0.9563380|-0.3708433	chr1	188011217	188011667	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24869_PI429285431	3.7517822	P	3.7465613	P	1.00362540806625	0	lncRNA	26410-1_{1..298}	lnc-FOXN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXN1-1:1	chr17	 26901215	 26901512	+	lnc-FOXN1-1	lnc-FOXN1-1:1	ENSG00000265168.1	RP11-192H23.5	SPAG5	"hg19_refFlat_ALDOC:range=chr17:26900544-269025505'pad=0,hg19_refFlat_ALDOC:range=chr17:26900544-269025505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ALDOB:range=chr9:104184091-1041931695'pad=0,hg19_refFlat_ALDOB:range=chr9:104184091-1041931695'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50chr17:26904583-26911261"	NA	inner
CUST_47822_PI429285431	5.0417986	P	5.3720684	P	0.795387723504934	0	lncRNA	51736-1_{1..3000}	"gi|410170900|ref|XR_159147.2| PREDICTED: Homo sapiens leucine rich repeat containing 37, member A4, pseudogene (LRRC37A4P), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170900|ref|XR_159147.2| PREDICTED: Homo sapiens leucine rich repeat containing 37, member A4, pseudogene (LRRC37A4P), misc_RNA"	NT_167251.1	   197650	   200649	-	55073	XR_159147.3	NA	NA	NA	NA	NA	Unknown
CUST_48166_PI429285431	4.3414626	P	4.2147164	P	1.09182845356439	0	lncRNA	52032-1_{1..1919}	"gi|410169953|ref|XR_111695.3| PREDICTED: Homo sapiens uncharacterized LOC100287808 (LOC100287808), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410169953|ref|XR_111695.3| PREDICTED: Homo sapiens uncharacterized LOC100287808 (LOC100287808), misc_RNA"	NA	NA	NA	NA	NA	XR_111695.3	NA	NA	NA	NA	NA	Unknown
CUST_5595_PI429285431	5.224552	P	3.6207886	P	3.03935122251322	0	lncRNA	5524-1_{1..729}	"transcript_id ""ENST00000561811.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561811.1"" | genecode_v17"	chr16	 66923072	 66923800	+	ENSG00000261088.1	ENST00000561811.1	RP11-61A14.3	RP11-61A14.3-001	PDP2	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr16:66914383-66925004"	NA	inner
CUST_18777_PI429285431	2.5348785	A	3.0636554	P	0.693142122823046	0	lncRNA	20473-1_{1..2131}	lnc-DDX20-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-DDX20-1:1	chr1	112288682	112290812	+	lnc-DDX20-1	lnc-DDX20-1:1	ENSG00000227811	RP4-773A18.4	C1orf183	NA	chr1:112278682-112298419	inner
CUST_37529_PI429285431	6.875573	P	6.3484564	P	1.44104621087154	0	lncRNA	38633-1_{1..655}	n346003|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1552|NULL|-1.2603100|-0.1734432	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346003|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1552|NULL|-1.2603100|-0.1734432	chr7	 22629360	 22630014	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_285_PI429285431	1.3946189	A	1.7757165	A	0.767853186931392	0	lncRNA	276-1_{1..480}	"transcript_id ""ENST00000452553.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452553.1"" | genecode_v17"	chr1	 73772899	 73773378	+	ENSG00000233973.1	ENST00000452553.1	RP4-598G3.1	RP4-598G3.1-002	NA	NA	NA	inter
LNCA_21_P0014422	11.19484	P	11.1986265	P	0.997378839456811	0	lncRNA	XR_109705	XR_109705	XR_109705	NA	Hs.565803	LOC646513	VLGN1945	NA	NP862031	NA	"PREDICTED: Homo sapiens VLGN1945 (LOC646513), miscRNA [XR_109705]"	chr22:30831908-30831967	hs|22q12.2	Agilent_HUMAN_G3V2	XR_109705	XR_109705	chr22	 30831908	 30831967	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40175_PI429285431	6.978953	P	6.1818357	P	1.73762564423403	0	lncRNA	41009-2_{3001..3108}	n407919|NR_027489|lncRNA|Homosapiens||RefGeneNoncode|NR_027489||6.1045800|-0.1425622	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407919|NR_027489|lncRNA|Homosapiens||RefGeneNoncode|NR_027489||6.1045800|-0.1425622	chr16	 86566781	 86566888	-	NA	NA	NA	NA	MTHFSD	NA	chr16:86559041-86588841	inner
CUST_51680_PI429285431	1.6763473	A	0.9633089	A	1.63925284644434	0	lncRNA	55242-1_{1..616}	hg19_lincRNAsTranscripts_TCONS_l2_00010961 range=chr17:72560057-72563679 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010961 range=chr17:72560057-72563679 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 72560057	 72560672	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18873_PI429285431	2.0850863	A	2.2256274	A	0.907178843245766	0	lncRNA	20566-1_{1..1815}	lnc-FGFR1OP-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FGFR1OP-6:1	chr6	166511768	166513582	+	lnc-FGFR1OP-6	lnc-FGFR1OP-6:1	ENSG00000204517	AL627443.1	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00"	NA	inter
LNCA_21_P0012897	0.92889	A	0.9118918	A	1.01185193857397	0	lncRNA	TCONS_l2_00022831	NA	NA	NA	NA	XLOC_l2_011987	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011987), lincRNA [TCONS_l2_00022831]"	chr5:34163243-34163184	hs|5p13.2	Agilent_HUMAN_G3V2	TCONS_l2_00022831	TCONS_l2_00022831	chr5	 34163184	 34163243	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49524_PI429285431	3.8471162	P	4.2559114	P	0.75325215479921	0	lncRNA	53316-1_{1..1454}	hg19_lincRNAsTranscripts_TCONS_l2_00024193 range=chr6:35512645-35514379 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024193 range=chr6:35512645-35514379 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 35512645	 35514098	+	NA	NA	NA	NA	FKBP5	NA	chr6:35523623-35524379	inter
CUST_36266_PI429285431	2.9424472	A	3.5153449	P	0.672265165007641	0	lncRNA	37504-1_{1..1839}	n344797|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_346|NULL|-1.3580700|-0.2584033	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344797|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_346|NULL|-1.3580700|-0.2584033	chr18	 59238574	 59240412	+	NA	NA	NA	NA	NA	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00"	NA	inter
CUST_21568_PI429285431	1.0924311	A	1.1915286	A	0.933616847229383	0	lncRNA	23183-1_{1..3000}	lnc-KDM5D-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-KDM5D-2:1	chrY	 21664918	 21667917	-	lnc-KDM5D-2	lnc-KDM5D-2:1	ENSG00000215580.4	BCORP1	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70"	NA	inter
CUST_11120_PI429285431	0.9087932	A	0.89914805	A	1.00670790642668	0	lncRNA	12677-2_{3001..4901}	lnc-ERP44-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERP44-3:3	chr9	102585103	102587003	-	lnc-ERP44-3	lnc-ERP44-3:3	XLOC_007808	linc-ALG2-5	NR4A3	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60chr9:102584137-102592163"	NA	inter
CUST_34713_PI429285431	1.8316497	A	1.1565907	A	1.59666206796498	0	lncRNA	36160-2_{3001..5083}	n341620|BC038357|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4091|NULL|-1.1321900|-0.3862816	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341620|BC038357|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4091|NULL|-1.1321900|-0.3862816	chr8	139452100	139454182	-	NA	NA	NA	NA	FAM135B	NA	chr8:139439100-139499699	inner
CUST_48411_PI429285431	7.6925735	P	7.7717814	P	0.946577214615385	0	lncRNA	52264-1_{1..255}	hg19_lincRNAsTranscripts_TCONS_l2_00001502 range=chr1:143744078-143744544 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001502 range=chr1:143744078-143744544 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	143744078	143744332	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35352_PI429285431	3.6548223	P	2.848869	P	1.74830064745945	0	lncRNA	36763-1_{1..2544}	n342396|AK090553|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4888|NULL|-0.9624850|-0.3009290	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342396|AK090553|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4888|NULL|-0.9624850|-0.3009290	chr19	 44501047	 44503590	-	NA	NA	NA	NA	ZNF230	"hg19_refFlat_ZNF155:range=chr19:44494217-445016265'pad=0,hg19_refFlat_ZNF155:range=chr19:44494217-445016265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF229:range=chr19:44932478-449470315'pad=0,hg19_refFlat_ZNF229:range=chr19:44932478-449470315'pad=0 3'pad=0 strand=- repeatMasking=none,-56.30;hg19_refFlat_ZNF155:range=chr19:44492696-445016265'pad=0,hg19_refFlat_ZNF155:range=chr19:44492696-445016265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70chr19:44507077-44516988"	NA	inner
CUST_35874_PI429285431	0.8965875	A	0.8925121	A	1.00282884567373	0	lncRNA	37265-1_{1..3000}	n344538|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_86|NULL|-1.3315700|-0.3806893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344538|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_86|NULL|-1.3315700|-0.3806893	chr10	 67330296	 67333295	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10"	NA	inter
CUST_33198_PI429285431	3.3820899	P	3.026585	A	1.27943326620955	0	lncRNA	34790-1_{1..3000}	n339894|AK124558|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2342|NULL|-0.6008330|-0.2301386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339894|AK124558|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2342|NULL|-0.6008330|-0.2301386	chr18	 55154942	 55157941	+	NA	NA	NA	NA	ONECUT2	NA	chr18:55144942-55158530	inner
CUST_990_PI429285431	2.390915	A	0.91537297	A	2.78088103870731	0	lncRNA	979-2_{3001..3778}	"transcript_id ""ENST00000451400.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000451400.1"" | genecode_v17"	chr2	105052725	105053502	+	ENSG00000235597.1	ENST00000451400.1	AC013402.2	AC013402.2-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30"	NA	inter
CUST_1754_PI429285431	3.3499644	P	3.3182883	P	1.02219901056617	0	lncRNA	1740-1_{1..553}	"transcript_id ""ENST00000515422.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515422.1"" | genecode_v17"	chr4	 40267092	 40267644	+	ENSG00000250338.1	ENST00000515422.1	RP11-395I6.2	RP11-395I6.2-001	NA	NA	NA	inter
CUST_34660_PI429285431	0.9078638	A	0.9007628	A	1.00493417125723	0	lncRNA	36112-1_{1..1929}	n341560|BC037909|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4031|NULL|-0.8659550|-0.2384348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341560|BC037909|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4031|NULL|-0.8659550|-0.2384348	chr8	 94358694	 94360622	-	NA	NA	NA	NA	FAM92A1	NA	chr8:94712773-94722661	inter
CUST_26768_PI429285431	0.9019682	A	0.89374375	A	1.00571703455093	0	lncRNA	28267-1_{1..2290}	n323819|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058013|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058013|0.0760592|-0.3859716	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323819|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058013|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058013|0.0760592|-0.3859716	chrX	117857546	117859835	+	NA	NA	NA	NA	IL13RA1	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30chrX:117861559-117885877"	NA	inner
LNCA_21_P0009279	7.4418902	P	7.398105	P	1.03081483139541	0	lncRNA	TCONS_00025505	NA	NA	NA	NA	XLOC_012317	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012317), lincRNA [TCONS_00025505]"	chr17:75544201-75556571	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_00025505	TCONS_00025505	chr17	 75544201	 75556571	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33_PI429285431	2.785118	A	2.1581912	A	1.54427191035061	0	lncRNA	32-1_{1..572}	"transcript_id ""ENST00000525376.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000525376.1"" | genecode_v17"	chr8	145923999	145924570	-	ENSG00000254533.1	ENST00000525376.1	AF186192.1	AF186192.1-001	NA	NA	NA	inter
LNCA_21_P0010712	0.92159086	A	0.90665144	A	1.0104090176562	0	lncRNA	ENST00000451023	NA	NA	NA	NA	XLOC_l2_000342	NA	ENST00000451023	THC2670296	NA	"BROAD Institute lincRNA (XLOC_l2_000342), lincRNA [TCONS_l2_00002123]"	chr1:108615274-108617028	hs|1p13.3	Agilent_HUMAN_G3V2	ENST00000451023	ENST00000451023	chr1	108615274	108617028	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15020_PI429285431	0.9057569	A	0.906404	A	0.999551565036487	0	lncRNA	16682-1_{1..221}	lnc-OR4F16-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR4F16-3:1	chr1	   689043	   689263	-	lnc-OR4F16-3	lnc-OR4F16-3:1	XLOC_000664	linc-OR4F16-8	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40"	NA	inter
CUST_37990_PI429285431	10.227001	P	9.973079	P	1.19244440050881	0	lncRNA	39077-1_{1..979}	n346545|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2095|NULL|-1.4403000|-0.1385342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346545|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2095|NULL|-1.4403000|-0.1385342	chr15	 23310102	 23311080	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18793_PI429285431	2.0489304	A	3.0431466	P	0.502008535776048	0	lncRNA	20489-1_{1..3000}	lnc-SEC61G-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SEC61G-4:1	chr7	 53879201	 53882200	-	lnc-SEC61G-4	lnc-SEC61G-4:1	ENSG00000205628	GS1-179L18.1	NA	NA	NA	inter
CUST_13560_PI429285431	0.89907426	A	0.8935969	A	1.00380383291946	0	lncRNA	15201-1_{1..245}	lnc-FAM169A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM169A-1:1	chr5	 74199354	 74199598	-	lnc-FAM169A-1	lnc-FAM169A-1:1	XLOC_004889	linc-FAM169A	NA	NA	NA	inter
CUST_13777_PI429285431	1.681924	A	1.6944709	A	0.991340859832607	0	lncRNA	15420-1_{1..281}	lnc-PLP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLP1-1:1	chrX	103001803	103002083	+	lnc-PLP1-1	lnc-PLP1-1:1	XLOC_008039	linc-PLP1	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60"	NA	inter
LNCA_21_P0012466	5.1994367	P	5.723598	P	0.695363236672214	0	lncRNA	TCONS_l2_00019596	NA	NA	NA	NA	XLOC_l2_010405	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010405), lincRNA [TCONS_l2_00019596]"	chr3:156505848-156505789	hs|3q25.31	Agilent_HUMAN_G3V2	TCONS_l2_00019596	TCONS_l2_00019596	chr3	156505789	156505848	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26964_PI429285431	2.0990112	A	1.9179921	A	1.13368442165314	0	lncRNA	28486-1_{1..457}	n324047|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053004|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053004|-1.2688000|-0.3575034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324047|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053004|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053004|-1.2688000|-0.3575034	chr9	 91780383	 91780839	+	NA	NA	NA	NA	SHC3	NA	chr9:91770383-91793682	inner
LNCA_21_P0006125	2.8168685	A	3.1794302	P	0.777782295238474	0	lncRNA	TCONS_00015917	NA	NA	NA	NA	XLOC_007279	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007279), lincRNA [TCONS_00015917]"	chr9:7961166-7961225	hs|9p24.1	Agilent_HUMAN_G3V2	TCONS_00015917	TCONS_00015917	chr9	  7961166	  7961225	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20993_PI429285431	0.9057987	A	0.8941293	A	1.00812141290759	0	lncRNA	22622-1_{1..735}	lnc-HNRNPA1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HNRNPA1-2:1	chr12	 54672436	 54673170	+	lnc-HNRNPA1-2	lnc-HNRNPA1-2:1	ENSG00000257596.1	RP11-968A15.2	CBX5	NA	chr12:54662436-54673915	inner
CUST_17764_PI429285431	0.9124503	A	0.92915094	A	0.988490742584585	0	lncRNA	19496-1_{1..471}	lnc-C1GALT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1GALT1-1:1	chr7	  7317216	  7317686	+	lnc-C1GALT1-1	lnc-C1GALT1-1:1	XLOC_005981	linc-MIOS	NA	NA	NA	inter
CUST_16820_PI429285431	0.91180485	A	0.8972093	A	1.01016821281898	0	lncRNA	18527-2_{3001..3557}	lnc-IRF2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRF2-2:4	chr4	185306288	185306844	-	lnc-IRF2-2	lnc-IRF2-2:4	XLOC_004205	linc-ENPP6-2	IRF2	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10chr4:185308876-185313530"	NA	inter
CUST_32875_PI429285431	0.9117231	A	0.91189456	A	0.999881160046448	0	lncRNA	34504-1_{1..2908}	n339541|AK092233|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1983|NULL|-0.2743520|-0.1172673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339541|AK092233|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1983|NULL|-0.2743520|-0.1172673	chr21	 46926023	 46928930	-	NA	NA	NA	NA	COL18A1	"hg19_refFlat_COL18A1:range=chr21:46875445-469323125'pad=0,hg19_refFlat_COL18A1:range=chr21:46875445-469323125'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.00;hg19_refFlat_COL18A1:range=chr21:46825146-469323125'pad=0,hg19_refFlat_COL18A1:range=chr21:46825146-469323125'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.00chr21:46916023-46933634"	NA	inner
CUST_42989_PI429285431	9.758975	P	9.97263	P	0.862349739037573	0	lncRNA	46147-1_{1..147}	ENST00000391162 ncrna:snoRNA chromosome:GRCh37:10:101996913:101997059:-1 gene:ENSG00000212464 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391162 ncrna:snoRNA chromosome:GRCh37:10:101996913:101997059:-1 gene:ENSG00000212464 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	101996913	101997059	-	ENSG00000212464	ENST00000391162	NA	NA	CHUK	NA	chr10:101986913-101989344	inner
CUST_12055_PI429285431	1.2031779	A	1.749171	A	0.684919765751361	0	lncRNA	13641-1_{1..3000}	lnc-KCNA5-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNA5-3:2	chr12	  5631015	  5634014	+	lnc-KCNA5-3	lnc-KCNA5-3:2	XLOC_009628	linc-CD9-4	NA	NA	NA	inter
CUST_19151_PI429285431	12.089457	P	10.958315	P	2.19032051743549	0	lncRNA	20825-1_{1..524}	lnc-SYNCRIP-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-SYNCRIP-3:1	NA	NA	      523	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40961_PI429285431	7.2401643	P	7.2050805	P	1.02461633689605	0	lncRNA	41636-1_{1..564}	n410988|NR_038450|lncRNA|Homosapiens||RefGeneNoncode|NR_038450||0.8152960|-0.1806787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410988|NR_038450|lncRNA|Homosapiens||RefGeneNoncode|NR_038450||0.8152960|-0.1806787	chr7	 56943077	 56943640	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44536_PI429285431	0.9149822	A	0.9179617	A	0.997936899099838	0	lncRNA	49129-1_{1..990}	"gi|310119530|ref|XR_108599.1| PREDICTED: Homo sapiens uncharacterized LOC100506329 (LOC100506329), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310119530|ref|XR_108599.1| PREDICTED: Homo sapiens uncharacterized LOC100506329 (LOC100506329), misc_RNA"	NA	NA	NA	NA	NA	XR_108599.1	NA	NA	NA	NA	NA	Unknown
CUST_3129_PI429285431	0.9083854	A	0.9004744	A	1.00549854918002	0	lncRNA	3108-1_{1..515}	"transcript_id ""ENST00000521274.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521274.1"" | genecode_v17"	chr8	 60513963	 60514477	+	ENSG00000253879.1	ENST00000521274.1	RP11-379I19.3	RP11-379I19.3-002	NA	NA	NA	inter
CUST_43320_PI429285431	5.2527595	P	4.08539	P	2.24601801586808	0	lncRNA	48151-1_{1..2985}	ENST00000602538 havana:lincRNA chromosome:GRCh37:20:52108884:52111868:1 gene:ENSG00000269969 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602538 havana:lincRNA chromosome:GRCh37:20:52108884:52111868:1 gene:ENSG00000269969 gene_biotype:lincRNA transcript_biotype:lincRNA	chr20	 52108884	 52111868	+	ENSG00000269969	ENST00000602538	NA	NA	TSHZ2	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10chr20:52098884-52111869"	NA	inner
CUST_6744_PI429285431	0.90581423	A	0.9037655	A	1.00142108020211	0	lncRNA	6692-1_{1..620}	"transcript_id ""ENST00000440889.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440889.1"" | genecode_v17"	chr20	 57935982	 57936601	-	ENSG00000230352.1	ENST00000440889.1	RP4-614C15.3	RP4-614C15.3-001	NA	NA	NA	inter
LNCA_21_P0003247	0.9290785	A	0.91792715	A	1.00775947672078	0	lncRNA	TCONS_00006924	NA	NA	NA	NA	XLOC_002746	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002746), lincRNA [TCONS_00006924]"	chr3:106970522-106970581	hs|3q13.12	Agilent_HUMAN_G3V2	TCONS_00006924	TCONS_00006924	chr3	106970522	106970581	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35917_PI429285431	2.7881498	P	2.9209971	A	0.912029692893997	0	lncRNA	37286-3_{6001..7617}	n344561|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_109|NULL|-1.3805400|-0.3217581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344561|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_109|NULL|-1.3805400|-0.3217581	chr6	167647550	167649166	+	NA	NA	NA	NA	UNC93A	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30chr6:167631550-167674481"	NA	inter
CUST_1308_PI429285431	3.8158488	P	4.032766	P	0.860402009891245	0	lncRNA	1298-1_{1..635}	"transcript_id ""ENST00000448129.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448129.1"" | genecode_v17"	chr3	 12919021	 12919655	-	ENSG00000232746.1	ENST00000448129.1	RP11-767C1.1	RP11-767C1.1-001	NA	NA	NA	inter
CUST_1081_PI429285431	1.293907	A	1.60262	A	0.807361669603832	0	lncRNA	1070-1_{1..680}	"transcript_id ""ENST00000453636.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453636.1"" | genecode_v17"	chr2	139362080	139362759	+	ENSG00000237772.1	ENST00000453636.1	AC092620.3	AC092620.3-001	NA	NA	NA	inter
CUST_31273_PI429285431	5.5978947	P	4.079162	P	2.86539235670486	0	lncRNA	33061-1_{1..1860}	n337730|AK023525|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|112|NULL|-1.0729500|-0.3873287	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337730|AK023525|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|112|NULL|-1.0729500|-0.3873287	chr15	 43650375	 43652234	-	NA	NA	NA	NA	ADAL	NA	chr15:43640375-43646096	inner
CUST_43405_PI429285431	11.634474	P	12.1240225	P	0.712247965162897	0	lncRNA	48217-1_{1..1870}	"gi|312261202|ref|NR_037580.1| Homo sapiens transmembrane protein 222 (TMEM222), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|312261202|ref|NR_037580.1| Homo sapiens transmembrane protein 222 (TMEM222), transcript variant 4, non-coding RNA"	Chr1	 27648636	 27650505	+	84065	NR_037580.1	NA	NA	NA	NA	NA	inter
CUST_17777_PI429285431	1.4582222	A	2.020994	A	0.677000216370058	0	lncRNA	19509-1_{1..718}	lnc-RGS9-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGS9-1:7	chr17	 63115270	 63115987	+	lnc-RGS9-1	lnc-RGS9-1:7	XLOC_012281	linc-RGS9-1	NA	NA	NA	inter
CUST_22892_PI429285431	0.9176039	A	0.9163013	A	1.00090330124845	0	lncRNA	24469-1_{1..572}	lnc-HEATR2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HEATR2-2:1	chr7	   604738	   605309	+	lnc-HEATR2-2	lnc-HEATR2-2:1	ENSG00000229380.1	AC147651.5	PRKAR1B	NA	chr7:594738-615256	inner
CUST_46602_PI429285431	8.195933	P	7.5039372	P	1.61551685209038	0	lncRNA	50782-3_{6001..7206}	"gi|253735748|ref|NR_028028.1| Homo sapiens inositol 1,4,5-trisphosphate receptor interacting protein-like 2 (ITPRIPL2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|253735748|ref|NR_028028.1| Homo sapiens inositol 1,4,5-trisphosphate receptor interacting protein-like 2 (ITPRIPL2), transcript variant 2, non-coding RNA"	Chr16	 19131254	 19132459	+	162073	NR_028028.1	NA	NA	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90"	NA	inter
CUST_39973_PI429285431	5.354848	P	5.9071617	P	0.681925623225691	0	lncRNA	40845-1_{1..571}	n407049|NR_024541_7|lncRNA|Homosapiens||RefGeneNoncode|NR_024541_7||0.0175797|-0.3560482	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407049|NR_024541_7|lncRNA|Homosapiens||RefGeneNoncode|NR_024541_7||0.0175797|-0.3560482	chr6	  3189365	  3189935	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10"	NA	inter
CUST_32846_PI429285431	1.4678292	A	1.6063383	A	0.908457482285549	0	lncRNA	34480-1_{1..895}	n339504|AJ001907|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1944|NULL|-1.0857400|-0.2883263	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339504|AJ001907|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1944|NULL|-1.0857400|-0.2883263	chr21	 39282251	 39283145	-	NA	NA	NA	NA	KCNJ6	NA	chr21:39272251-39288696	inner
CUST_11387_PI429285431	0.90295625	A	1.0072503	A	0.930260032845681	0	lncRNA	12951-2_{3001..4483}	lnc-SLITRK5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK5-1:1	chr13	 88343492	 88344974	+	lnc-SLITRK5-1	lnc-SLITRK5-1:1	XLOC_010463	linc-GPC5-8	SLITRK5	NA	chr13:88330492-88331871	inter
CUST_11665_PI429285431	0.921417	A	1.6823405	A	0.590118462318037	0	lncRNA	13242-1_{1..429}	lnc-STIM2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STIM2-5:1	chr4	 28754781	 28755209	+	lnc-STIM2-5	lnc-STIM2-5:1	XLOC_003488	linc-PCDH7-5	NA	NA	NA	inter
LNCA_21_P0010899	11.240009	P	10.566917	P	1.59448662951898	0	lncRNA	TCONS_l2_00003732	NA	NA	NA	NA	XLOC_l2_002076	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002076), lincRNA [TCONS_l2_00003732]"	chr10:99069392-99069333	hs|10q24.1	Agilent_HUMAN_G3V2	TCONS_l2_00003732	TCONS_l2_00003732	chr10	 99069333	 99069392	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24336_PI429285431	10.302201	P	10.007568	P	1.2265729157937	0	lncRNA	25889-1_{1..388}	lnc-GPR15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR15-1:1	chr3	 98244055	 98244442	+	lnc-GPR15-1	lnc-GPR15-1:1	ENSG00000248839.1	RP11-227H4.5	CLDND1	"hg19_refFlat_RPL38:range=chr17:72200095-722059685'pad=0,hg19_refFlat_RPL38:range=chr17:72200095-722059685'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.90chr3:98234317-98241910"	NA	inter
CUST_7890_PI429285431	6.5169888	P	6.6927657	P	0.885290656347496	0	lncRNA	9508-1_{1..3000}	lnc-ANKRD11-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ANKRD11-3:1	chr16	 89584809	 89587808	-	lnc-ANKRD11-3	lnc-ANKRD11-3:1	ENSG00000245196	AC092123.1	SPG7	"hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80chr16:89574809-89598625"	NA	inner
CUST_37880_PI429285431	7.190476	P	7.063079	P	1.09232108868745	0	lncRNA	38971-1_{1..1226}	n346416|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1966|NULL|-1.2893000|-0.2134893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346416|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1966|NULL|-1.2893000|-0.2134893	chr5	 21459618	 21460843	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5103_PI429285431	1.4716377	A	1.1033671	A	1.29080457831753	0	lncRNA	5043-1_{1..472}	"transcript_id ""ENST00000565943.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565943.1"" | genecode_v17"	chr15	 24483292	 24483763	-	ENSG00000260959.1	ENST00000565943.1	RP11-350A1.2	RP11-350A1.2-001	NA	NA	NA	inter
CUST_47639_PI429285431	1.3485777	A	1.6933767	A	0.787417673991833	0	lncRNA	51627-2_{3001..3115}	"gi|258547132|ref|NR_028443.1| Homo sapiens SLC25A5 antisense RNA 1 (SLC25A5-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|258547132|ref|NR_028443.1| Homo sapiens SLC25A5 antisense RNA 1 (SLC25A5-AS1), non-coding RNA"	ChrX	118602996	118603110	-	100303728	NR_028443.1	NA	NA	NA	"hg19_refFlat_SLC25A6:range=chrY:1455495-14609025'pad=0,hg19_refFlat_SLC25A6:range=chrY:1455495-14609025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC25A5:range=chrX:118602479-1186050215'pad=0,hg19_refFlat_SLC25A5:range=chrX:118602479-1186050215'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.80;hg19_refFlat_SLC25A31:range=chr4:128651701-1286947295'pad=0,hg19_refFlat_SLC25A31:range=chr4:128651701-1286947295'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_SLC25A6:range=chrX:1505495-15109025'pad=0,hg19_refFlat_SLC25A6:range=chrX:1505495-15109025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC25A4:range=chr4:186064527-1860681255'pad=0,hg19_refFlat_SLC25A4:range=chr4:186064527-1860681255'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10"	NA	inter
CUST_27521_PI429285431	0.9281366	A	0.9185213	A	1.00668707740926	0	lncRNA	29091-1_{1..357}	n324699|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322323|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322323|-1.0901500|-0.4540569	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324699|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322323|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322323|-1.0901500|-0.4540569	chr22	 24887875	 24888231	-	NA	NA	NA	NA	UPB1	NA	chr22:24891251-24899180	inter
CUST_23093_PI429285431	1.3240991	A	2.0590634	A	0.600832892402297	0	lncRNA	24665-1_{1..423}	lnc-LEPROT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-LEPROT-1:1	chr1	 65959550	 65959972	+	lnc-LEPROT-1	lnc-LEPROT-1:1	ENSG00000237852.1	RP4-630A11.3	LEPR	NA	chr1:65949550-65969871	inner
CUST_23734_PI429285431	8.420546	P	8.866636	P	0.734029525444081	0	lncRNA	25297-1_{1..460}	lnc-RLBP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RLBP1-1:1	chr15	 89631418	 89631877	-	lnc-RLBP1-1	lnc-RLBP1-1:1	ENSG00000261407.1	RP11-326A19.3	ABHD2	NA	chr15:89631381-89641498	inner
CUST_779_PI429285431	0.9873401	A	0.9820324	A	1.00368579318136	0	lncRNA	771-1_{1..317}	"transcript_id ""ENST00000425176.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425176.1"" | genecode_v17"	chr2	 16535524	 16535840	+	ENSG00000224400.1	ENST00000425176.1	AC010880.1	AC010880.1-002	NA	NA	NA	inter
CUST_52045_PI429285431	13.457696	P	13.035574	P	1.33989690462006	0	lncRNA	55575-1_{1..458}	hg19_lincRNAsTranscripts_TCONS_l2_00017004 range=chr21:30591208-30595202 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017004 range=chr21:30591208-30595202 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr21	 30591208	 30591665	+	NA	NA	NA	NA	BACH1	NA	chr21:30594575-30605202	inter
CUST_51956_PI429285431	5.9848633	P	6.238165	P	0.838974170380544	0	lncRNA	55499-1_{1..540}	hg19_lincRNAsTranscripts_TCONS_l2_00016224 range=chr20:25990431-26031798 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016224 range=chr20:25990431-26031798 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 25990431	 25990970	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19502_PI429285431	0.9307427	A	1.4099782	A	0.717357659035119	0	lncRNA	21158-1_{1..540}	lnc-SMARCC2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMARCC2-2:1	chr12	 56551967	 56552506	-	lnc-SMARCC2-2	lnc-SMARCC2-2:1	ENSG00000257809.1	RP11-603J24.14	SMARCC2	NA	chr12:56555636-56562004	inter
CUST_10297_PI429285431	5.893473	P	7.8622956	P	0.255461431385937	0	lncRNA	11824-1_{1..1464}	lnc-CNOT8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CNOT8-1:1	chr5	154262715	154264178	+	lnc-CNOT8-1	lnc-CNOT8-1:1	XLOC_004611	linc-MRPL22	GEMIN5	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50chr5:154266976-154273999"	NA	inter
CUST_43859_PI429285431	6.308255	P	6.523811	P	0.861214192554421	0	lncRNA	48580-1_{1..793}	"gi|363543312|ref|NR_045632.1| Homo sapiens NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) (NFU1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|363543312|ref|NR_045632.1| Homo sapiens NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) (NFU1), transcript variant 5, non-coding RNA"	Chr2	 69623245	 69624037	-	27247	NR_045632.1	NA	NA	NA	NA	NA	inter
CUST_44169_PI429285431	5.835841	P	5.8945136	P	0.960147128637211	0	lncRNA	48828-1_{1..719}	"gi|333360865|ref|NR_038214.1| Homo sapiens IQ motif containing F5 pseudogene (IQCF4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333360865|ref|NR_038214.1| Homo sapiens IQ motif containing F5 pseudogene (IQCF4), transcript variant 2, non-coding RNA"	Chr3	 51851619	 51852337	+	100506840	NR_038214.1	NA	NA	NA	NA	NA	inter
CUST_36460_PI429285431	0.9255649	A	0.9309572	A	0.996269318805777	0	lncRNA	37670-1_{1..968}	n344970|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_519|NULL|-1.3322000|-0.3182539	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344970|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_519|NULL|-1.3322000|-0.3182539	chr7	124870579	124871546	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1963_PI429285431	0.97916096	A	0.9119754	A	1.04767087027104	0	lncRNA	1956-1_{1..3000}	"transcript_id ""ENST00000507311.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000507311.1"" | genecode_v17"	chr4	165675283	165678282	+	ENSG00000248771.1	ENST00000507311.1	RP11-294O2.2	RP11-294O2.2-001	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-24.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30"	NA	inter
CUST_2090_PI429285431	0.90616065	A	0.9238663	A	0.987802380105122	0	lncRNA	2081-1_{1..822}	"transcript_id ""ENST00000502680.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502680.1"" | genecode_v17"	chr5	 15112486	 15113307	-	ENSG00000249332.1	ENST00000502680.1	RP1-251I12.1	RP1-251I12.1-001	NA	NA	NA	inter
CUST_9490_PI429285431	0.95267665	A	0.92829037	A	1.01704695003434	0	lncRNA	10997-1_{1..298}	lnc-FLRT2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FLRT2-2:1	chr14	 86537207	 86537504	+	lnc-FLRT2-2	lnc-FLRT2-2:1	XLOC_010891	linc-GPR65-6	NA	NA	NA	inter
CUST_14616_PI429285431	3.215161	P	3.3117533	A	0.935239455438431	0	lncRNA	16285-1_{1..481}	lnc-PDZRN4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDZRN4-1:1	chr12	 42159122	 42159602	+	lnc-PDZRN4-1	lnc-PDZRN4-1:1	XLOC_009714	linc-PPHLN1	NA	NA	NA	inter
CUST_40337_PI429285431	0.910508	A	0.9189383	A	0.99417360100524	0	lncRNA	41142-1_{1..978}	n408904|NR_030766|lncRNA|Homosapiens||RefGeneNoncode|NR_030766||1.3058900|-0.2012342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408904|NR_030766|lncRNA|Homosapiens||RefGeneNoncode|NR_030766||1.3058900|-0.2012342	chr7	 57233376	 57234353	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31540_PI429285431	0.8943281	A	2.0279849	A	0.455759047083125	0	lncRNA	33299-1_{1..2569}	n338028|AK075186|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|415|NULL|0.0490861|-0.4255871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338028|AK075186|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|415|NULL|0.0490861|-0.4255871	chr1	 85639994	 85642562	-	NA	NA	NA	NA	SYDE2	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20chr1:85629994-85652563"	NA	inner
CUST_44228_PI429285431	0.921537	A	0.9118118	A	1.006763766606	0	lncRNA	48877-1_{1..1001}	"gi|397139038|ref|XR_108478.2| PREDICTED: Homo sapiens uncharacterized LOC100506907, transcript variant 1 (LOC100506907), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139038|ref|XR_108478.2| PREDICTED: Homo sapiens uncharacterized LOC100506907, transcript variant 1 (LOC100506907), misc_RNA"	NA	NA	NA	NA	NA	XR_108478.2	NA	NA	NA	NA	NA	Unknown
CUST_28123_PI429285431	0.9200591	A	1.1852173	A	0.832107484226803	0	lncRNA	29746-1_{1..571}	n325397|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323832|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323832|-0.9356440|-0.2434492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325397|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323832|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323832|-0.9356440|-0.2434492	chr2	 19067187	 19067757	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40168_PI429285431	2.8045232	M	2.1574783	A	1.56595732796162	0	lncRNA	41003-2_{3001..5191}	n407891|NR_027458|lncRNA|Homosapiens||RefGeneNoncode|NR_027458||7.5827500|-0.3840109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407891|NR_027458|lncRNA|Homosapiens||RefGeneNoncode|NR_027458||7.5827500|-0.3840109	chr1	210114537	210116727	+	NA	NA	NA	NA	SYT14	NA	chr1:210111538-210337636	inner
CUST_10983_PI429285431	0.99838465	A	1.82894	A	0.562312744411049	0	lncRNA	12527-1_{1..920}	lnc-C3orf23-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C3orf23-1:2	chr3	 44470558	 44471477	+	lnc-C3orf23-1	lnc-C3orf23-1:2	XLOC_002630	linc-ZNF167	NA	NA	NA	inter
CUST_39997_PI429285431	1.0559614	A	1.1090401	A	0.963877226145355	0	lncRNA	40863-1_{1..3000}	n407114|NR_024618|lncRNA|Homosapiens||RefGeneNoncode|NR_024618||0.5959830|-0.2836712	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407114|NR_024618|lncRNA|Homosapiens||RefGeneNoncode|NR_024618||0.5959830|-0.2836712	chr3	122605359	122608358	+	NA	NA	NA	NA	DIRC2	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80chr3:122595359-122599986"	NA	inter
CUST_39851_PI429285431	1.190118	A	1.7181199	A	0.693514571220519	0	lncRNA	40750-2_{3001..5368}	n406474|NR_023386|lncRNA|Homosapiens||RefGeneNoncode|NR_023386||7.4662300|-0.2425851	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406474|NR_023386|lncRNA|Homosapiens||RefGeneNoncode|NR_023386||7.4662300|-0.2425851	chr1	 16796930	 16799297	-	NA	NA	NA	NA	NECAP2	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30chr1:16783930-16786585"	NA	inter
CUST_13167_PI429285431	0.9196226	A	0.9269991	A	0.994900048958456	0	lncRNA	14796-1_{1..746}	lnc-DHX37-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-DHX37-9:1	chr12	127174581	127175326	-	lnc-DHX37-9	lnc-DHX37-9:1	XLOC_010243	linc-DHX37-8	NA	NA	NA	inter
CUST_6301_PI429285431	4.998297	P	5.1890426	P	0.87615279928926	0	lncRNA	6225-1_{1..780}	"transcript_id ""ENST00000602464.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602464.1"" | genecode_v17"	chr19	  2287163	  2287942	-	ENSG00000270079.1	ENST00000602464.1	AC004152.6	AC004152.6-001	C19orf35	NA	chr19:2277163-2282181	inter
CUST_3552_PI429285431	2.5287495	A	1.8891822	A	1.55786184786553	0	lncRNA	3522-1_{1..800}	"transcript_id ""ENST00000439014.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439014.1"" | genecode_v17"	chr9	132200495	132201294	+	ENSG00000226355.1	ENST00000439014.1	RP11-65J3.2	RP11-65J3.2-001	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40"	NA	inter
CUST_5938_PI429285431	0.92209	A	0.9026338	A	1.01357735658058	0	lncRNA	5867-1_{1..2919}	"transcript_id ""ENST00000591222.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591222.1"" | genecode_v17"	chr17	 66186025	 66188943	+	ENSG00000267731.1	ENST00000591222.1	RP11-147L13.8	RP11-147L13.8-001	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40"	NA	inter
CUST_28466_PI429285431	2.5537863	A	2.1056113	A	1.36431331708019	0	lncRNA	30132-1_{1..1623}	n325800|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044133|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044133|0.0219425|-0.2460394	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325800|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044133|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044133|0.0219425|-0.2460394	chr13	 21344908	 21346530	-	NA	NA	NA	NA	XPO4	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr13:21351468-21358817"	NA	inner
CUST_41991_PI429285431	3.2908285	A	3.698135	P	0.75402982798206	0	lncRNA	43821-1_{1..94}	ENST00000408140 ncrna:miRNA chromosome:GRCh37:3:128081008:128081101:1 gene:ENSG00000221067 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408140 ncrna:miRNA chromosome:GRCh37:3:128081008:128081101:1 gene:ENSG00000221067 gene_biotype:miRNA transcript_biotype:miRNA	chr3	128081008	128081101	+	ENSG00000221067	ENST00000408140	NA	NA	EEFSEC	NA	chr3:128071008-128091101	inner
CUST_27678_PI429285431	2.0369072	A	1.5248835	A	1.42604914371978	0	lncRNA	29256-1_{1..864}	n324885|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158340|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158340|-0.2448970|-0.4237579	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324885|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158340|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158340|-0.2448970|-0.4237579	chr21	 20550935	 20551798	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45770_PI429285431	1.2532387	A	1.5579097	A	0.809626827188599	0	lncRNA	50115-1_{1..1428}	"gi|310120631|ref|XR_109069.1| PREDICTED: Homo sapiens uncharacterized LOC100506352 (LOC100506352), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310120631|ref|XR_109069.1| PREDICTED: Homo sapiens uncharacterized LOC100506352 (LOC100506352), misc_RNA"	NA	NA	NA	NA	NA	XR_109069.1	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40"	NA	Unknown
LNCA_21_P0012810	3.1496706	P	2.8754675	A	1.20932591056609	0	lncRNA	ENST00000510975	NA	NA	NA	NA	XLOC_l2_011309	NA	ENST00000510975	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011309), lincRNA [TCONS_l2_00022028]"	chr4:150658828-150658769	hs|4q31.23	Agilent_HUMAN_G3V2	ENST00000510975	ENST00000510975	chr4	150658769	150658828	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004764	0.9677288	A	2.714334	A	0.298002182126517	0	lncRNA	ENST00000443471	NA	NA	NA	NA	XLOC_005776	NA	ENST00000443471	NA	NA	"BROAD Institute lincRNA (XLOC_005776), lincRNA [TCONS_00011525]"	chr6:84446011-84437832	hs|6q14.2	Agilent_HUMAN_G3V2	ENST00000443471	ENST00000443471	chr6	 84437832	 84446011	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22247_PI429285431	0.93048394	A	1.0641893	A	0.911487413688066	0	lncRNA	23848-1_{1..393}	lnc-CCL18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCL18-1:1	chr17	 34416892	 34417284	+	lnc-CCL18-1	lnc-CCL18-1:1	ENSG00000224298.1	AC069363.1	CCL3	NA	chr17:34415602-34417506	inner
CUST_24009_PI429285431	4.019751	P	4.57162	P	0.682135854118908	0	lncRNA	25562-1_{1..2825}	lnc-ARC-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARC-1:3	chr8	143751350	143754174	-	lnc-ARC-1	lnc-ARC-1:3	ENSG00000234616.3	JRK	PSCA	NA	chr8:143751726-143761388	inner
CUST_29435_PI429285431	0.9230844	A	1.046914	A	0.917748273250711	0	lncRNA	31191-1_{1..445}	n332820|AF059253|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064829_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064829_08|1.7355100|-0.2090425	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332820|AF059253|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064829_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064829_08|1.7355100|-0.2090425	chr6	  3232923	  3233367	-	NA	NA	NA	NA	TUBB2B	NA	chr6:3224495-3227968	inter
CUST_7525_PI429285431	6.0902805	P	4.2108784	P	3.67922549514102	0	lncRNA	9164-1_{1..1930}	lnc-XRN2-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-XRN2-2:6	chr20	 21227117	 21229046	+	lnc-XRN2-2	lnc-XRN2-2:6	ENSG00000088970	PLK1S1	PLK1S1	NA	chr20:21217117-21227260	inner
CUST_19829_PI429285431	3.725961	P	3.7599251	P	0.97673283366382	0	lncRNA	21486-1_{1..510}	lnc-AQP8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AQP8-1:1	chr16	 25250511	 25251020	+	lnc-AQP8-1	lnc-AQP8-1:1	ENSG00000259955.1	CTD-2547G23.2	ZKSCAN2	NA	chr16:25247322-25260608	inner
LNCA_21_P0008140	2.37138	A	2.6064892	A	0.849620687494251	0	lncRNA	TCONS_00021965	NA	NA	NA	NA	XLOC_010561	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010561), lincRNA [TCONS_00021965]"	chr13:31630382-31630323	hs|13q12.3	Agilent_HUMAN_G3V2	TCONS_00021965	TCONS_00021965	chr13	 31630323	 31630382	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006456	1.9717464	A	1.9937513	A	0.98486309787998	0	lncRNA	TCONS_00017074	NA	NA	NA	NA	XLOC_008185	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008185), lincRNA [TCONS_00017074]"	chrX:73049075-73049016	hs|Xq13.2	Agilent_HUMAN_G3V2	TCONS_00017074	TCONS_00017074	chrX	 73049016	 73049075	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51326_PI429285431	4.018492	P	4.037818	P	0.986693561514911	0	lncRNA	54929-1_{1..501}	hg19_lincRNAsTranscripts_TCONS_l2_00009082 range=chr15:45127378-45146678 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009082 range=chr15:45127378-45146678 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 45127378	 45127878	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7901_PI429285431	1.2956157	A	0.93136483	A	1.28721306110571	0	lncRNA	9516-1_{1..507}	lnc-GPR55-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR55-1:7	chr2	231860563	231861069	-	lnc-GPR55-1	lnc-GPR55-1:7	ENSG00000238062	XLOC_002517	SPATA3	NA	chr2:231860839-231870744	inter
CUST_44338_PI429285431	1.5800123	A	1.9924176	A	0.751369625193283	0	lncRNA	48965-2_{3001..3886}	"gi|310124580|ref|XR_110583.1| PREDICTED: Homo sapiens uncharacterized LOC285463 (LOC285463), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310124580|ref|XR_110583.1| PREDICTED: Homo sapiens uncharacterized LOC285463 (LOC285463), misc_RNA"	NA	NA	NA	NA	NA	XR_110583.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CTBP1:range=chr4:1206028-12427435'pad=0,hg19_refFlat_CTBP1:range=chr4:1206028-12427435'pad=0 3'pad=0 strand=- repeatMasking=none,-108.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CTBP1:range=chr4:1206028-12351195'pad=0,hg19_refFlat_CTBP1:range=chr4:1206028-12351195'pad=0 3'pad=0 strand=- repeatMasking=none,-108.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70"	NA	Unknown
CUST_21835_PI429285431	4.299923	P	4.853767	P	0.681202672437012	0	lncRNA	23445-1_{1..552}	lnc-HNRPLL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HNRPLL-2:1	chr2	 38898496	 38899047	-	lnc-HNRPLL-2	lnc-HNRPLL-2:1	ENSG00000232518.1	AC074366.3	GALM	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70chr2:38893052-38908563"	NA	inner
CUST_24355_PI429285431	0.9197348	A	0.9007647	A	1.01323590052541	0	lncRNA	25907-1_{1..659}	lnc-CTIF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CTIF-1:1	chr18	 46574498	 46575156	+	lnc-CTIF-1	lnc-CTIF-1:1	ENSG00000264269.1	RP11-15F12.1	DYM	NA	chr18:46570172-46584844	inner
CUST_51116_PI429285431	1.1459233	A	1.3248638	A	0.883351482139281	0	lncRNA	54753-1_{1..875}	hg19_lincRNAsTranscripts_TCONS_l2_00006994 range=chr13:106359310-106371029 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006994 range=chr13:106359310-106371029 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	106359310	106360184	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34968_PI429285431	0.9225762	A	0.91409796	A	1.0058939696415	0	lncRNA	36385-1_{1..1971}	n341890|AK026751|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4370|NULL|-1.1523900|-0.3278901	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341890|AK026751|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4370|NULL|-1.1523900|-0.3278901	chr12	 40534727	 40536697	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38611_PI429285431	1.8812603	A	3.5652232	P	0.311226562170339	0	lncRNA	39616-1_{1..3000}	n383733|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tpz.2||1.1098600|-0.2745452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383733|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tpz.2||1.1098600|-0.2745452	chr2	130783571	130786570	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45505_PI429285431	0.91863096	A	0.9162341	A	1.00166275760215	0	lncRNA	49916-1_{1..3000}	"gi|359807117|ref|NR_045609.1| Homo sapiens KIN, antigenic determinant of recA protein homolog (mouse) (KIN), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|359807117|ref|NR_045609.1| Homo sapiens KIN, antigenic determinant of recA protein homolog (mouse) (KIN), transcript variant 3, non-coding RNA"	Chr10	  7792925	  7795924	-	22944	NR_045609.1	NA	NA	NA	NA	NA	inter
CUST_13417_PI429285431	0.90615845	A	0.8988571	A	1.00507373820402	0	lncRNA	15055-1_{1..780}	lnc-C9orf66-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf66-6:1	chr9	  1041868	  1042647	-	lnc-C9orf66-6	lnc-C9orf66-6:1	XLOC_007630	linc-C9orf66-1	DMRT2	NA	chr9:1050346-1052520	inter
CUST_21699_PI429285431	2.6299155	A	3.234908	P	0.65747479804467	0	lncRNA	23310-1_{1..332}	lnc-C18orf32-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C18orf32-1:1	chr18	 46973643	 46973974	-	lnc-C18orf32-1	lnc-C18orf32-1:1	ENSG00000263895.1	RP11-110H1.9	DYM	NA	chr18:46963643-46983790	inner
CUST_22686_PI429285431	8.462255	P	8.818004	P	0.781463827377544	0	lncRNA	24269-1_{1..770}	lnc-PPP4R1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP4R1-4:1	chr18	  9136362	  9137131	-	lnc-PPP4R1-4	lnc-PPP4R1-4:1	ENSG00000266053.1	RP11-143J12.2	ANKRD12	NA	chr18:9136751-9146643	inter
CUST_5011_PI429285431	5.2488008	P	5.552889	P	0.809953955112497	0	lncRNA	4952-1_{1..3000}	"transcript_id ""ENST00000398460.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000398460.3"" | genecode_v17"	chr14	101323582	101326581	+	ENSG00000214548.9	ENST00000398460.3	MEG3	MEG3-028	NA	NA	NA	inter
CUST_33447_PI429285431	2.112714	A	2.9892302	A	0.544681132925036	0	lncRNA	35025-1_{1..2018}	n340182|AK055271|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2643|NULL|-1.2290800|-0.4726301	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340182|AK055271|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2643|NULL|-1.2290800|-0.4726301	chr4	 92524425	 92526442	+	NA	NA	NA	NA	FAM190A	NA	chr4:92514425-92523370	inter
CUST_14968_PI429285431	1.4864826	A	2.6091933	A	0.459230160184422	0	lncRNA	16631-1_{1..3000}	lnc-MAPK8IP2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAPK8IP2-1:7	chr22	 51025699	 51028698	+	lnc-MAPK8IP2-1	lnc-MAPK8IP2-1:7	XLOC_014288	linc-MAPK8IP2	CHKB	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.31;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10chr22:51017387-51021428"	NA	inter
CUST_43737_PI429285431	0.9182036	A	0.91998774	A	0.998764092752491	0	lncRNA	48480-2_{3001..6000}	"gi|282395054|ref|NR_033184.1| Homo sapiens zinc finger protein 678 (ZNF678), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|282395054|ref|NR_033184.1| Homo sapiens zinc finger protein 678 (ZNF678), transcript variant 2, non-coding RNA"	Chr1	227754220	227757219	+	339500	NR_033184.1	NA	NA	NA	NA	NA	inter
CUST_22483_PI429285431	12.348241	P	12.175982	P	1.12682150310535	0	lncRNA	24070-1_{1..509}	lnc-LCN6-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LCN6-1:4	chr9	139620763	139621271	-	lnc-LCN6-1	lnc-LCN6-1:4	ENSG00000233016.1	SNHG7	FAM69B	NA	chr9:139610763-139619170	inter
CUST_2582_PI429285431	0.91392267	A	0.9095391	A	1.00304307998225	0	lncRNA	2570-1_{1..265}	"transcript_id ""ENST00000424506.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424506.1"" | genecode_v17"	chr6	 94873638	 94873902	+	ENSG00000231143.1	ENST00000424506.1	RP3-463P15.1	RP3-463P15.1-001	NA	NA	NA	inter
CUST_40097_PI429285431	1.4283319	A	1.5885785	A	0.894872097282089	0	lncRNA	40942-1_{1..1905}	n407508|NR_026972|lncRNA|Homosapiens||RefGeneNoncode|NR_026972||-1.1867000|-0.2826749	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407508|NR_026972|lncRNA|Homosapiens||RefGeneNoncode|NR_026972||-1.1867000|-0.2826749	chr6	   994884	   996788	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14289_PI429285431	3.2331307	P	3.7755208	P	0.686632428458034	0	lncRNA	15948-2_{3001..4855}	lnc-STAG2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STAG2-2:1	chrX	124460549	124462403	+	lnc-STAG2-2	lnc-STAG2-2:1	XLOC_008063	linc-CXorf64-2	LOC100129520	NA	chrX:124453969-124456950	inter
CUST_28733_PI429285431	2.8762004	A	3.8886566	P	0.49570159292716	0	lncRNA	30433-1_{1..432}	n326126|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046434|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046434|-1.0411400|-0.4133792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326126|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046434|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046434|-1.0411400|-0.4133792	chr10	  2104038	  2104469	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30521_PI429285431	1.2705824	A	1.6842337	A	0.75072097640743	0	lncRNA	32301-1_{1..490}	n335679|CR616786|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000295981_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000295981_06|-0.8929630|-0.4215725	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335679|CR616786|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000295981_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000295981_06|-0.8929630|-0.4215725	chr6	  2167899	  2168388	-	NA	NA	NA	NA	GMDS	NA	chr6:2157899-2178389	inner
CUST_22510_PI429285431	0.9188329	A	1.0992228	A	0.882464470901795	0	lncRNA	24097-1_{1..415}	lnc-YBX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YBX2-1:1	chr17	  7187346	  7187760	-	lnc-YBX2-1	lnc-YBX2-1:1	ENSG00000263342.1	RP1-4G17.2	YBX2	"hg19_refFlat_SLC2A4:range=chr17:7185254-71899485'pad=0,hg19_refFlat_SLC2A4:range=chr17:7185254-71899485'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.60chr17:7191571-7197390"	NA	inner
LNCA_21_P0013372	0.9219947	A	0.906202	A	1.0110067994428	0	lncRNA	ENST00000439058	XR_108746	XR_108746	NA	Hs.59203	XLOC_l2_013301	NA	ENST00000439058	THC2715922	NA	"PREDICTED: Homo sapiens hypothetical LOC100506098, transcript variant 3 (LOC100506098), miscRNA [XR_108746]"	chr7:20261073-20261132	hs|7p21.1	Agilent_HUMAN_G3V2	ENST00000439058	ENST00000439058	chr7	 20261073	 20261132	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45893_PI429285431	0.9255693	A	0.9266422	A	0.999256598849635	0	lncRNA	50208-2_{3001..6000}	"gi|403048746|ref|NR_073141.1| Homo sapiens progesterone receptor (PGR), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|403048746|ref|NR_073141.1| Homo sapiens progesterone receptor (PGR), transcript variant 4, non-coding RNA"	Chr11	100903355	100906354	-	5241	NR_073141.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0005199	0.92162377	A	0.9062682	A	1.01070051540954	0	lncRNA	ENST00000434537	XR_108854	XR_108854	NA	Hs.535863	XLOC_006548	NA	ENST00000434537	THC2605484	NA	"PREDICTED: Homo sapiens hypothetical LOC100506527 (LOC100506527), miscRNA [XR_108854]"	chr7:101208694-101208635	hs|7q22.1	Agilent_HUMAN_G3V2	ENST00000434537	ENST00000434537	chr7	101208635	101208694	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44417_PI429285431	1.435443	A	1.6092842	A	0.886479270169214	0	lncRNA	49030-1_{1..1758}	"gi|341915245|ref|XR_132691.1| PREDICTED: Homo sapiens uncharacterized LOC100507209 (LOC100507209), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915245|ref|XR_132691.1| PREDICTED: Homo sapiens uncharacterized LOC100507209 (LOC100507209), misc_RNA"	NA	NA	NA	NA	NA	XR_132691.1	NA	NA	NA	"hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	Unknown
CUST_13104_PI429285431	2.7603824	A	3.2571132	P	0.708710927989244	0	lncRNA	14728-1_{1..280}	lnc-RP11-973F15.1.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-973F15.1.1-2:2	chr8	123682599	123682878	-	lnc-RP11-973F15.1.1-2	lnc-RP11-973F15.1.1-2:2	XLOC_007197	linc-HAS2-6	NA	NA	NA	inter
CUST_37608_PI429285431	5.336104	P	5.3339095	P	1.00152226896463	0	lncRNA	38706-1_{1..1944}	n346085|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1635|NULL|-1.5532900|-0.2886556	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346085|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1635|NULL|-1.5532900|-0.2886556	chr2	 67561136	 67563079	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19981_PI429285431	0.9110424	A	1.1352257	A	0.856079509414736	0	lncRNA	21634-1_{1..493}	lnc-AC005323.1.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC005323.1.1-1:3	chr17	 10438363	 10438855	+	lnc-AC005323.1.1-1	lnc-AC005323.1.1-1:3	ENSG00000214970.2	CTC-297N7.7	MYH2	"hg19_refFlat_MYH1:range=chr17:10395733-104199595'pad=0,hg19_refFlat_MYH1:range=chr17:10395733-104199595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MYH4:range=chr17:10346692-103700625'pad=0,hg19_refFlat_MYH4:range=chr17:10346692-103700625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_MYH8:range=chr17:10293771-103235445'pad=0,hg19_refFlat_MYH8:range=chr17:10293771-103235445'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_MYH2:range=chr17:10424597-104512375'pad=0,hg19_refFlat_MYH2:range=chr17:10424597-104512375'pad=0 3'pad=0 strand=- repeatMasking=none,-95.20chr17:10428363-10448548"	NA	inner
CUST_30712_PI429285431	4.476513	P	4.7665854	P	0.817861014108649	0	lncRNA	32494-1_{1..311}	n336242|X98989|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325177|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325177|2.2971600|-0.0709443	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336242|X98989|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325177|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325177|2.2971600|-0.0709443	chr2	 89160731	 89161041	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5975_PI429285431	1.1049174	A	0.9040404	A	1.14939684961137	0	lncRNA	5903-1_{1..2270}	"transcript_id ""ENST00000585863.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585863.1"" | genecode_v17"	chr17	 74795126	 74797395	+	ENSG00000267065.1	ENST00000585863.1	CTD-2246P4.1	CTD-2246P4.1-002	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40"	NA	inter
CUST_10666_PI429285431	1.053223	A	0.90368074	A	1.10921748238769	0	lncRNA	12199-1_{1..691}	lnc-TBC1D19-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBC1D19-4:2	chr4	 26859821	 26860511	+	lnc-TBC1D19-4	lnc-TBC1D19-4:2	XLOC_003483	linc-STIM2-1	STIM2	NA	chr4:26862313-26870506	inter
CUST_3145_PI429285431	1.1681302	A	0.9063719	A	1.19893903430377	0	lncRNA	3124-1_{1..606}	"transcript_id ""ENST00000518489.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518489.1"" | genecode_v17"	chr8	 62734040	 62734645	-	ENSG00000253834.1	ENST00000518489.1	RP11-705O24.3	RP11-705O24.3-001	NA	NA	NA	inter
LNCA_21_P0007572	3.7040973	P	2.4292238	A	2.41977599563131	0	lncRNA	TCONS_00020456	NA	NA	NA	NA	XLOC_009788	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009788), lincRNA [TCONS_00020456]"	chr12:66010647-66010706	hs|12q14.3	Agilent_HUMAN_G3V2	TCONS_00020456	TCONS_00020456	chr12	 66010647	 66010706	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12991_PI429285431	1.723976	A	1.4920692	A	1.17438610187393	0	lncRNA	14618-1_{1..247}	lnc-CERS6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CERS6-1:1	chr2	169121606	169121852	+	lnc-CERS6-1	lnc-CERS6-1:1	XLOC_001743	linc-LASS6	NA	NA	NA	inter
LNCA_21_P0009543	0.92276245	A	0.9092465	A	1.00941256479775	0	lncRNA	TCONS_00026485	NA	NA	NA	NA	XLOC_012811	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012811), lincRNA [TCONS_00026485]"	chr18:32523249-32523190	hs|18q12.1	Agilent_HUMAN_G3V2	TCONS_00026485	TCONS_00026485	chr18	 32523190	 32523249	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12193_PI429285431	1.0434275	A	1.3222936	A	0.824238580970331	0	lncRNA	13793-1_{1..587}	lnc-MFSD1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MFSD1-1:2	chr3	158587028	158587614	+	lnc-MFSD1-1	lnc-MFSD1-1:2	XLOC_002897	linc-IQCJ	NA	NA	NA	inter
CUST_26569_PI429285431	2.451005	A	2.3979194	A	1.03748149204241	0	lncRNA	28073-1_{1..2180}	lnc-C2orf42-3:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:14	chr2	 70313384	 70315563	-	lnc-C2orf42-3	lnc-C2orf42-3:14	ENSG00000179818.6	PCBP1-AS1	PCBP1	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90chr2:70314585-70316335"	NA	inter
CUST_34481_PI429285431	2.253447	A	2.6922054	A	0.737769268254349	0	lncRNA	35949-1_{1..910}	n341358|AL359058|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3827|NULL|-0.6912910|-0.1542343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341358|AL359058|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3827|NULL|-0.6912910|-0.1542343	chr7	150038859	150039768	+	NA	NA	NA	NA	LRRC61	NA	chr7:150028859-150035245	inter
CUST_11366_PI429285431	5.4006004	P	5.29906	P	1.07291843184256	0	lncRNA	12930-1_{1..1427}	lnc-TMEM70-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM70-1:1	chr8	 74794565	 74795991	+	lnc-TMEM70-1	lnc-TMEM70-1:1	XLOC_006844	linc-TMEM70-2	UBE2W	NA	chr8:74784565-74791110	inter
CUST_1029_PI429285431	1.7750664	A	1.604348	A	1.12561885487152	0	lncRNA	1019-1_{1..606}	"transcript_id ""ENST00000603052.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603052.1"" | genecode_v17"	chr2	112024445	112025050	-	ENSG00000270190.1	ENST00000603052.1	RP11-803D5.4	RP11-803D5.4-001	NA	NA	NA	inter
CUST_4426_PI429285431	1.4997333	A	1.0020236	A	1.41197025825769	0	lncRNA	4376-1_{1..876}	"transcript_id ""ENST00000546835.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546835.1"" | genecode_v17"	chr12	117099387	117100262	+	ENSG00000257883.1	ENST00000546835.1	RP11-497G19.1	RP11-497G19.1-001	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60"	NA	inter
CUST_7678_PI429285431	0.90255773	A	1.3656114	A	0.72544911583079	0	lncRNA	9311-1_{1..1731}	lnc-ZNF26-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF26-1:1	chr12	133489798	133491528	+	lnc-ZNF26-1	lnc-ZNF26-1:1	ENSG00000247077	ENST00000499045	ZNF605	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90chr12:133498019-133500880"	NA	inter
CUST_6263_PI429285431	3.7289062	P	4.046423	P	0.802449884860113	0	lncRNA	6188-1_{1..594}	"transcript_id ""ENST00000582755.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582755.1"" | genecode_v17"	chr18	 73939945	 73940538	-	ENSG00000264595.1	ENST00000582755.1	RP11-94B19.5	RP11-94B19.5-001	NA	NA	NA	inter
CUST_11197_PI429285431	1.288697	A	0.9231705	A	1.28835171736749	0	lncRNA	12755-1_{1..321}	lnc-IAH1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IAH1-2:2	chr2	  9715444	  9715764	+	lnc-IAH1-2	lnc-IAH1-2:2	XLOC_001338	linc-TAF1B-3	YWHAQ	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60chr2:9724106-9725727"	NA	inter
CUST_18620_PI429285431	4.8678603	P	5.9304037	P	0.478787236973627	0	lncRNA	20326-1_{1..3000}	lnc-TUBGCP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUBGCP2-1:1	chr10	135090276	135093275	-	lnc-TUBGCP2-1	lnc-TUBGCP2-1:1	ENSG00000151651	ADAM8	ADAM8	NA	chr10:135080276-135090407	inner
CUST_46552_PI429285431	5.376372	P	5.4102836	P	0.976768377840061	0	lncRNA	50737-1_{1..1528}	"gi|389886540|ref|NR_051984.1| Homo sapiens uncharacterized LOC100507118 (LOC100507118), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|389886540|ref|NR_051984.1| Homo sapiens uncharacterized LOC100507118 (LOC100507118), non-coding RNA"	Chr15	 91509599	 91511126	+	100507118	NR_051984.1	NA	NA	NA	NA	NA	inter
CUST_38204_PI429285431	4.0136075	P	2.5564127	A	2.74573958116237	0	lncRNA	39271-2_{3001..5435}	n381557|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001laz.2||0.3048070|-0.3809799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381557|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001laz.2||0.3048070|-0.3809799	chr10	115674514	115676948	+	NA	NA	NA	NA	NHLRC2	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20chr10:115661514-115672265"	NA	inner
CUST_39578_PI429285431	0.9480598	A	0.937096	A	1.00762847675217	0	lncRNA	40521-1_{1..1462}	n387553|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011hpt.1||1.0498900|-0.3151916	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387553|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011hpt.1||1.0498900|-0.3151916	chr6	  2811903	  2813364	+	NA	NA	NA	NA	NA	"hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20"	NA	inter
CUST_29499_PI429285431	0.92773175	A	0.9246592	A	1.00213199885407	0	lncRNA	31257-1_{1..523}	n332930|AF086493|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067372|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067372|-1.3877100|-0.2461741	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332930|AF086493|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067372|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067372|-1.3877100|-0.2461741	chr19	  9642965	  9643487	-	NA	NA	NA	NA	ZNF426	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30chr19:9638667-9649303"	NA	inner
LNCA_21_P0002208	6.2064137	P	6.4198203	P	0.862498229266667	0	lncRNA	TCONS_00003664	NA	NA	NA	NA	XLOC_001454	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001454), lincRNA [TCONS_00003664]"	chr2:45560391-45560450	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00003664	TCONS_00003664	chr2	 45560391	 45560450	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002264	0.9293085	A	1.7389998	A	0.570503918185257	0	lncRNA	TCONS_00003808	NA	NA	NA	NA	XLOC_001607	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001607), lincRNA [TCONS_00003808]"	chr2:105720179-105720238	hs|2q12.1	Agilent_HUMAN_G3V2	TCONS_00003808	TCONS_00003808	chr2	105720179	105720238	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2771_PI429285431	5.682202	P	5.860999	P	0.883439350495756	0	lncRNA	2754-1_{1..837}	"transcript_id ""ENST00000419463.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419463.1"" | genecode_v17"	chr7	 17414491	 17415327	+	ENSG00000236318.1	ENST00000419463.1	AC019117.1	AC019117.1-001	NA	NA	NA	inter
CUST_31779_PI429285431	1.7513895	A	0.921124	A	1.7780125408996	0	lncRNA	33519-1_{1..1711}	n338321|BX247986|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|715|NULL|8.9105100|-0.3274456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338321|BX247986|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|715|NULL|8.9105100|-0.3274456	chr14	 59655449	 59657159	+	NA	NA	NA	NA	DAAM1	NA	chr14:59655399-59807337	inner
CUST_32783_PI429285431	0.9030741	A	0.899257	A	1.00264931535272	0	lncRNA	34418-1_{1..842}	n339424|AL137603|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1856|NULL|-1.1882600|-0.4961384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339424|AL137603|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1856|NULL|-1.1882600|-0.4961384	chrY	  2849724	  2850565	+	NA	NA	NA	NA	ZFY	NA	chrY:2839724-2850547	inner
CUST_5968_PI429285431	4.457327	P	4.427104	P	1.02116995760887	0	lncRNA	5897-1_{1..419}	"transcript_id ""ENST00000581911.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581911.1"" | genecode_v17"	chr17	 71890888	 71891306	-	ENSG00000266765.1	ENST00000581911.1	CTD-2582D11.1	CTD-2582D11.1-001	NA	NA	NA	inter
CUST_11784_PI429285431	1.1969088	A	2.1818593	A	0.505243058232157	0	lncRNA	13365-1_{1..283}	lnc-RLN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RLN2-1:1	chr9	  5310932	  5311214	-	lnc-RLN2-1	lnc-RLN2-1:1	XLOC_007635	linc-RLN2	RLN2	NA	chr9:5300932-5304580	inter
CUST_5344_PI429285431	5.7172356	P	5.6325703	P	1.06044169421383	0	lncRNA	5282-1_{1..447}	"transcript_id ""ENST00000558885.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558885.1"" | genecode_v17"	chr15	 96779014	 96779460	+	ENSG00000259763.1	ENST00000558885.1	RP11-327J17.1	RP11-327J17.1-001	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40"	NA	inter
CUST_46366_PI429285431	0.9053131	A	0.90708005	A	0.998775993297341	0	lncRNA	50588-1_{1..2790}	"gi|310123145|ref|XR_110237.1| PREDICTED: Homo sapiens uncharacterized LOC283588 (LOC283588), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123145|ref|XR_110237.1| PREDICTED: Homo sapiens uncharacterized LOC283588 (LOC283588), misc_RNA"	NA	NA	NA	NA	NA	XR_110237.1	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	Unknown
CUST_4996_PI429285431	0.92539954	A	0.9127916	A	1.00877745598808	0	lncRNA	4940-1_{1..436}	"transcript_id ""ENST00000554195.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554195.1"" | genecode_v17"	chr14	101129458	101129893	+	ENSG00000196273.3	ENST00000554195.1	LINC00523	LINC00523-006	NA	NA	NA	inter
CUST_33197_PI429285431	0.9068457	A	0.9016506	A	1.00360746019559	0	lncRNA	34789-1_{1..2751}	n339893|AK123271|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2341|NULL|-0.9275910|-0.2619836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339893|AK123271|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2341|NULL|-0.9275910|-0.2619836	chr4	 24897086	 24899836	-	NA	NA	NA	NA	CCDC149	NA	chr4:24887086-24909819	inner
CUST_6059_PI429285431	15.85788	P	15.544842	P	1.24232100358294	0	lncRNA	5985-1_{1..607}	"transcript_id ""ENST00000581170.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581170.1"" | genecode_v17"	chr18	  5232875	  5233481	-	ENSG00000265091.1	ENST00000581170.1	RP11-835E18.5	RP11-835E18.5-002	NA	NA	NA	inter
CUST_24462_PI429285431	1.042437	A	1.0122452	A	1.02114787383006	0	lncRNA	26015-1_{1..747}	lnc-TIMP3-6:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMP3-6:5	chr22	 34140116	 34140862	+	lnc-TIMP3-6	lnc-TIMP3-6:5	ENSG00000224973.1	CTA-282F2.3	LARGE	NA	chr22:34130116-34150179	inner
CUST_27638_PI429285431	0.91989696	A	1.0070342	A	0.941388908290325	0	lncRNA	29216-1_{1..631}	n324844|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171190|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171190|-1.2215000|-0.5386347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324844|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171190|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171190|-1.2215000|-0.5386347	chr21	 25690669	 25691299	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32095_PI429285431	3.498179	P	3.7641635	P	0.831631033188851	0	lncRNA	33800-1_{1..862}	n338657|BC039518|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1071|NULL|-0.7821630|-0.2008479	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338657|BC039518|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1071|NULL|-0.7821630|-0.2008479	chr2	  9778900	  9779761	+	NA	NA	NA	NA	YWHAQ	NA	chr2:9768900-9771106	inter
CUST_23770_PI429285431	5.9973736	P	6.364734	P	0.775199529373282	0	lncRNA	25333-1_{1..1114}	lnc-CDIPT-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDIPT-1:5	chr16	 29822963	 29824076	-	lnc-CDIPT-1	lnc-CDIPT-1:5	ENSG00000238045.4	AC009133.14	MAZ	"hg19_refFlat_MAZ:range=chr16:29818023-298215525'pad=0,hg19_refFlat_MAZ:range=chr16:29818023-298215525'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.00chr16:29817855-29822504"	NA	inter
CUST_48370_PI429285431	1.4284384	A	1.4007128	A	1.0194037743819	0	lncRNA	52223-1_{1..942}	hg19_lincRNAsTranscripts_TCONS_l2_00000389 range=chr1:89888178-89890150 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000389 range=chr1:89888178-89890150 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 89888178	 89889119	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004027	0.9950287	A	0.93419296	A	1.04306982663942	0	lncRNA	ENST00000503691	NA	NA	NA	NA	XLOC_004464	NA	ENST00000503691	NA	NA	"BROAD Institute lincRNA (XLOC_004464), lincRNA [TCONS_00009456]"	chr5:88877119-88877178	hs|5q14.3	Agilent_HUMAN_G3V2	ENST00000503691	ENST00000503691	chr5	 88877119	 88877178	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18073_PI429285431	4.0818686	P	4.195237	P	0.924427190477151	0	lncRNA	19808-1_{1..338}	lnc-TMEM130-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM130-1:1	chr7	 98286688	 98287025	-	lnc-TMEM130-1	lnc-TMEM130-1:1	XLOC_006532	linc-BAIAP2L1	NA	NA	NA	inter
CUST_36043_PI429285431	0.9183233	A	0.905534	A	1.00890427653856	0	lncRNA	37362-6_{15001..18000}	n344643|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_191|NULL|-1.3262900|-0.2857767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344643|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_191|NULL|-1.3262900|-0.2857767	chr2	216490716	216493715	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_TBX1:range=chr22:19747167-197543905'pad=0,hg19_refFlat_TBX1:range=chr22:19747167-197543905'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40"	NA	inter
CUST_47660_PI429285431	1.2688092	A	0.91743714	A	1.27577336143482	0	lncRNA	51643-1_{1..2348}	"gi|345842504|ref|NR_027455.3| Homo sapiens uncharacterized LOC100131434 (LOC100131434), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|345842504|ref|NR_027455.3| Homo sapiens uncharacterized LOC100131434 (LOC100131434), non-coding RNA"	ChrX	148609130	148611477	-	100131434	NR_027455.3	NA	NA	NA	NA	NA	inter
CUST_34608_PI429285431	5.7747073	P	3.3176563	P	5.4909318288085	0	lncRNA	36063-1_{1..1984}	n341491|AK055620|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3961|NULL|0.4968200|-0.3074491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341491|AK055620|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3961|NULL|0.4968200|-0.3074491	chr8	 42883691	 42885674	+	NA	NA	NA	NA	HOOK3	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20chr8:42873691-42885682"	NA	inner
LNCA_21_P0003005	1.0158628	A	0.9613252	A	1.03852619061534	0	lncRNA	TCONS_00006139	NA	NA	NA	NA	XLOC_002745	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002745), lincRNA [TCONS_00006139]"	chr3:104736728-104736787	hs|3q13.11	Agilent_HUMAN_G3V2	TCONS_00006139	TCONS_00006139	chr3	104736728	104736787	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24156_PI429285431	6.368061	P	5.821547	P	1.46055228010407	0	lncRNA	25707-2_{3001..3921}	lnc-TRIM56-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-TRIM56-1:1	chr7	100740328	100741248	+	lnc-TRIM56-1	lnc-TRIM56-1:1	ENSG00000260336.1	RP11-395B7.7	TRIM56	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60chr7:100728786-100733909"	NA	inter
CUST_4825_PI429285431	1.2279872	A	0.94775593	A	1.21438954047371	0	lncRNA	4768-1_{1..349}	"transcript_id ""ENST00000555852.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555852.1"" | genecode_v17"	chr14	 52577840	 52578188	-	ENSG00000258694.1	ENST00000555852.1	RP11-1033H12.1	RP11-1033H12.1-001	NA	NA	NA	inter
CUST_48554_PI429285431	0.9373702	A	0.92835844	A	1.00626602595215	0	lncRNA	52402-1_{1..1151}	hg19_lincRNAsTranscripts_TCONS_l2_00013987 range=chr2:131452770-131476463 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013987 range=chr2:131452770-131476463 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	131452770	131453920	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51503_PI429285431	3.7683668	P	3.7014122	P	1.0475031628277	0	lncRNA	55079-1_{1..323}	hg19_lincRNAsTranscripts_TCONS_l2_00010286 range=chr16:75538524-75539214 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010286 range=chr16:75538524-75539214 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 75538524	 75538846	-	NA	NA	NA	NA	CHST6	NA	chr16:75528524-75528926	inter
LNCA_21_P0008038	1.0279914	A	0.9696829	A	1.04124422928225	0	lncRNA	TCONS_00021734	NA	NA	NA	NA	XLOC_010319	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010319), lincRNA [TCONS_00021734]"	chr13:25693481-25693540	hs|13q12.13	Agilent_HUMAN_G3V2	TCONS_00021734	TCONS_00021734	chr13	 25693481	 25693540	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42248_PI429285431	10.160234	P	10.298125	P	0.908846779994177	0	lncRNA	44384-1_{1..69}	ENST00000387441 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:12138:12206:1 gene:ENSG00000210176 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000387441 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:12138:12206:1 gene:ENSG00000210176 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	chrMT	    12138	    12206	+	ENSG00000210176	ENST00000387441	NA	NA	NA	NA	NA	Unknown
CUST_40167_PI429285431	3.4762712	P	3.3446355	P	1.09553509409684	0	lncRNA	41003-1_{1..3000}	n407891|NR_027458|lncRNA|Homosapiens||RefGeneNoncode|NR_027458||7.5827500|-0.3840109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407891|NR_027458|lncRNA|Homosapiens||RefGeneNoncode|NR_027458||7.5827500|-0.3840109	chr1	210111537	210114536	+	NA	NA	NA	NA	SYT14	NA	chr1:210111538-210337636	inner
CUST_26961_PI429285431	0.91970533	A	0.9105194	A	1.00638751519863	0	lncRNA	28483-1_{1..755}	n324044|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053010|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053010|0.2218240|-0.1921907	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324044|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053010|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053010|0.2218240|-0.1921907	chr9	 92185711	 92186465	-	NA	NA	NA	NA	GADD45G	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10chr9:92219927-92221470"	NA	inner
CUST_17135_PI429285431	2.076485	A	2.1599038	A	0.943818398299555	0	lncRNA	18844-1_{1..2179}	lnc-SLC44A3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC44A3-2:1	chr1	 95153449	 95155627	+	lnc-SLC44A3-2	lnc-SLC44A3-2:1	XLOC_000303	linc-SLC44A3-1	NA	"hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-18.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40"	NA	inter
CUST_50480_PI429285431	3.5047817	P	3.5588598	P	0.963209749446605	0	lncRNA	54178-3_{6001..7897}	hg19_lincRNAsTranscripts_TCONS_l2_00030277 range=chrX:100699084-100750930 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030277 range=chrX:100699084-100750930 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	100705084	100706980	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_49837_PI429285431	6.2116823	P	5.482548	P	1.65764411133114	0	lncRNA	53595-1_{1..330}	hg19_lincRNAsTranscripts_TCONS_l2_00025982 range=chr7:65245125-65257783 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025982 range=chr7:65245125-65257783 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 65245125	 65245454	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46353_PI429285431	1.0545362	A	0.9101911	A	1.10522882954621	0	lncRNA	50577-1_{1..951}	"gi|364502980|ref|NR_045664.1| Homo sapiens intraflagellar transport 43 homolog (Chlamydomonas) (IFT43), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|364502980|ref|NR_045664.1| Homo sapiens intraflagellar transport 43 homolog (Chlamydomonas) (IFT43), transcript variant 4, non-coding RNA"	Chr14	 76452096	 76453046	+	112752	NR_045664.1	NA	NA	NA	NA	NA	inter
CUST_40931_PI429285431	3.462189	P	3.959454	P	0.708448555635404	0	lncRNA	41615-1_{1..794}	n410853|NR_038310|lncRNA|Homosapiens||RefGeneNoncode|NR_038310||-1.0694200|-0.1784909	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410853|NR_038310|lncRNA|Homosapiens||RefGeneNoncode|NR_038310||-1.0694200|-0.1784909	chr17	  6919136	  6919929	-	NA	NA	NA	NA	BCL6B	"hg19_refFlat_C17orf49:range=chr17:6918177-69205845'pad=0,hg19_refFlat_C17orf49:range=chr17:6918177-69205845'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_C17orf49:range=chr17:6918177-69206405'pad=0,hg19_refFlat_C17orf49:range=chr17:6918177-69206405'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80chr17:6926369-6932961"	NA	inter
CUST_48006_PI429285431	0.9038414	A	0.9046755	A	0.999422013035551	0	lncRNA	51891-1_{1..3000}	"gi|410173273|ref|XR_172185.1| PREDICTED: Homo sapiens uncharacterized LOC642533 (LOC642533), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173273|ref|XR_172185.1| PREDICTED: Homo sapiens uncharacterized LOC642533 (LOC642533), misc_RNA"	NA	NA	NA	NA	NA	XR_172185.1	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00"	NA	Unknown
LNCA_33_P3305203	0.922487	A	0.9202011	A	1.00158572106817	0	lncRNA	XR_110237	XR_110237	XR_110237	   283588	Hs.46519	LOC283588	uncharacterized LOC283588	NA	THC2477609	NA	"PREDICTED: Homo sapiens hypothetical LOC283588 (LOC283588), miscRNA [XR_110237]"	chr14:91314296-91314237	hs|14q32.11	Agilent_HUMAN_G3V2	XR_110237	XR_110237	chr14	 91314237	 91314296	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11137_PI429285431	3.7014122	P	4.213765	P	0.701078161073195	0	lncRNA	12694-1_{1..356}	lnc-XRCC4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-XRCC4-1:2	chr5	 82694043	 82694398	+	lnc-XRCC4-1	lnc-XRCC4-1:2	XLOC_004448	linc-VCAN	NA	NA	NA	inter
CUST_37407_PI429285431	11.501102	P	11.266431	P	1.17663837962477	0	lncRNA	38513-1_{1..226}	n345861|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1410|NULL|-1.2910900|-0.1877257	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345861|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1410|NULL|-1.2910900|-0.1877257	chr13	 29173842	 29174067	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1017_PI429285431	0.92495686	A	0.91446114	A	1.00730160640247	0	lncRNA	1006-1_{1..616}	"transcript_id ""ENST00000593452.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593452.1"" | genecode_v17"	chr2	108442197	108442812	-	ENSG00000230651.2	ENST00000593452.1	AC096655.2	AC096655.2-003	RGPD4	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr2:108443388-108453326"	NA	inter
CUST_25056_PI429285431	4.8906674	P	4.7888365	P	1.07313449565219	0	lncRNA	26594-1_{1..427}	lnc-TMED5-1:26	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMED5-1:26	chr1	 93780706	 93781132	-	lnc-TMED5-1	lnc-TMED5-1:26	ENSG00000223745.1	RP4-717I23.3	NA	"hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0,hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10"	NA	inter
CUST_37374_PI429285431	0.9158812	A	0.90988815	A	1.00416270580111	0	lncRNA	38478-1_{1..3000}	n345823|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1372|NULL|-1.3343400|-0.3796738	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345823|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1372|NULL|-1.3343400|-0.3796738	chr2	 78102057	 78105056	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47154_PI429285431	16.997719	P	16.823866	P	1.12806718986141	0	lncRNA	51233-1_{1..885}	"gi|395132439|ref|NR_073022.1| Homo sapiens ribosomal protein L18 (RPL18), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|395132439|ref|NR_073022.1| Homo sapiens ribosomal protein L18 (RPL18), transcript variant 3, non-coding RNA"	Chr19	 49118584	 49119468	-	6141	NR_073022.1	NA	NA	NA	NA	NA	inter
CUST_2887_PI429285431	7.444292	P	7.659019	P	0.861709204811563	0	lncRNA	2868-1_{1..536}	"transcript_id ""ENST00000415249.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415249.1"" | genecode_v17"	chr7	 91268162	 91268697	-	ENSG00000223665.1	ENST00000415249.1	CTB-111F10.1	CTB-111F10.1-001	NA	NA	NA	inter
CUST_15764_PI429285431	0.90424967	A	1.1127993	A	0.865406804796792	0	lncRNA	17452-1_{1..224}	lnc-HSPH1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HSPH1-2:2	chr13	 31569848	 31570071	-	lnc-HSPH1-2	lnc-HSPH1-2:2	XLOC_010560	linc-HMGB1-1	NA	NA	NA	inter
CUST_14470_PI429285431	0.9300956	A	1.798813	A	0.547633497198717	0	lncRNA	16133-1_{1..1636}	lnc-C5orf27-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf27-1:3	chr5	 95184545	 95186180	+	lnc-C5orf27-1	lnc-C5orf27-1:3	XLOC_004478	linc-CAST-3	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.91"	NA	inter
CUST_45312_PI429285431	1.9677762	A	1.6360989	A	1.25847564795543	0	lncRNA	49754-1_{1..1910}	"gi|383792199|ref|NR_047534.1| Homo sapiens CDKN2B antisense RNA 1 (CDKN2B-AS1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|383792199|ref|NR_047534.1| Homo sapiens CDKN2B antisense RNA 1 (CDKN2B-AS1), transcript variant 4, non-coding RNA"	Chr9	 21994790	 21996699	+	100048912	NR_047534.1	NA	NA	NA	NA	NA	inter
CUST_33_PI429201921	0.97274405	A	0.9254098	A	1.0333537719475	0	lncRNA	34-1_{1..1126}	TC05002843.hg.1	 TCONS_00010261-XLOC_004726 // Rinn lincRNAs // linc-NSUN2-2 chr5:-:7347525-7348225 // chr5 // 100 // 100 // 0 // --- // 0///TCONS_00009598-XLOC_004726 // Rinn lincRNAs // linc-NSUN2-2 chr5:-:7347098-7348090 // chr5 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr5:-:7347098-7348090	NA	Affy_HUMAN_HTA2.0	TCONS_00009598-XLOC_004726	linc-NSUN2-2	chr5	  7347098	  7348090	-	NA	NA	NA	NA	FAM75A4	NA	chr9:41321107-41321985	Unknown
CUST_43938_PI429285431	0.946512	A	1.5899067	A	0.640204756162162	0	lncRNA	48648-1_{1..2700}	"gi|384229067|ref|NR_015377.2| Homo sapiens uncharacterized LOC654433 (LOC654433), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|384229067|ref|NR_015377.2| Homo sapiens uncharacterized LOC654433 (LOC654433), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NR_015377.2	NA	NA	NA	NA	NA	Unknown
CUST_32234_PI429285431	12.462011	P	14.688288	P	0.213709507929997	0	lncRNA	33926-1_{1..705}	n338807|AL049452|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1230|NULL|-0.5520300|-0.3679490	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338807|AL049452|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1230|NULL|-0.5520300|-0.3679490	chr13	 95286322	 95287026	+	NA	NA	NA	NA	GPR180	NA	chr13:95276322-95286899	inner
CUST_32050_PI429285431	2.4899964	A	1.4119428	A	2.11118587005069	0	lncRNA	33764-1_{1..1791}	n338613|AK092472|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1019|NULL|-1.3130000|-0.3768537	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338613|AK092472|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1019|NULL|-1.3130000|-0.3768537	chr13	 28959687	 28961477	-	NA	NA	NA	NA	FLT1	NA	chr13:28949687-28971478	inner
CUST_2285_PI429285431	1.2979642	A	1.1347204	A	1.11980210722061	0	lncRNA	2277-1_{1..432}	"transcript_id ""ENST00000503367.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503367.1"" | genecode_v17"	chr5	102865377	102865808	-	ENSG00000248757.1	ENST00000503367.1	CTD-2193G5.1	CTD-2193G5.1-001	NUDT12	NA	chr5:102884556-102887686	inter
CUST_41366_PI429285431	0.90485203	A	0.90300894	A	1.00127834902946	0	lncRNA	42447-1_{1..90}	ENST00000583981 ncrna:miRNA chromosome:GRCh37:5:139575287:139575376:-1 gene:ENSG00000264890 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583981 ncrna:miRNA chromosome:GRCh37:5:139575287:139575376:-1 gene:ENSG00000264890 gene_biotype:miRNA transcript_biotype:miRNA	chr5	139575287	139575376	-	ENSG00000264890	ENST00000583981	NA	NA	C5orf32	NA	chr5:139565287-139585376	inner
CUST_45854_PI429285431	5.889062	P	5.6290054	P	1.19752568518121	0	lncRNA	50184-1_{1..2838}	"gi|407892489|ref|NR_026886.3| Homo sapiens leucine rich transmembrane and 0-methyltransferase domain containing (LRTOMT), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|407892489|ref|NR_026886.3| Homo sapiens leucine rich transmembrane and 0-methyltransferase domain containing (LRTOMT), transcript variant 3, non-coding RNA"	Chr11	 71791377	 71794214	+	220074	NR_026886.3	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20"	NA	inter
CUST_27535_PI429285431	1.0059462	A	1.096695	A	0.939035236556001	0	lncRNA	29111-1_{1..3000}	n324720|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320107|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320107|0.2099150|-0.2705541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324720|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320107|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320107|0.2099150|-0.2705541	chr22	 19985278	 19988277	-	NA	NA	NA	NA	C22orf25	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30chr22:20008631-20019331"	NA	inner
CUST_11184_PI429285431	0.9203867	A	0.9125689	A	1.00543359474736	0	lncRNA	12741-1_{1..360}	lnc-MIXL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MIXL1-1:1	chr1	226410040	226410399	+	lnc-MIXL1-1	lnc-MIXL1-1:1	XLOC_000592	linc-MIXL1-1	LIN9	NA	chr1:226418861-226420285	inter
CUST_15251_PI429285431	10.178384	P	9.69028	P	1.40260035668033	0	lncRNA	16922-1_{1..456}	lnc-TMEM132C-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132C-7:1	chr12	127630257	127630712	+	lnc-TMEM132C-7	lnc-TMEM132C-7:1	XLOC_009943	linc-TMEM132C-6	NA	NA	NA	inter
CUST_38134_PI429285431	0.92121464	A	0.92296046	A	0.998790621677344	0	lncRNA	39205-1_{1..2145}	n381278|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gdo.2||0.3423440|-0.3801737	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381278|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gdo.2||0.3423440|-0.3801737	chr1	165738165	165740309	+	NA	NA	NA	NA	TMCO1	"hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40chr1:165728165-165738135"	NA	inter
CUST_25856_PI429285431	0.9245963	A	2.1526194	A	0.426902021713853	0	lncRNA	27377-1_{1..741}	lnc-MYBPH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYBPH-1:1	chr1	203121678	203122418	-	lnc-MYBPH-1	lnc-MYBPH-1:1	ENSG00000224671.1	RP11-335O13.8	ADORA1	NA	chr1:203111678-203132028	inner
CUST_5608_PI429285431	1.2154454	A	1.1126672	A	1.07383936681664	0	lncRNA	5536-1_{1..1937}	"transcript_id ""ENST00000604855.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604855.1"" | genecode_v17"	chr16	 73094279	 73096215	+	ENSG00000271009.1	ENST00000604855.1	RP11-346C20.3	RP11-346C20.3-001	ZFHX3	NA	chr16:73084279-73092534	inter
CUST_2576_PI429285431	1.293265	A	0.90582067	A	1.30807415514437	0	lncRNA	2564-1_{1..305}	"transcript_id ""ENST00000429137.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429137.1"" | genecode_v17"	chr6	 89008669	 89008973	-	ENSG00000234426.1	ENST00000429137.1	RP11-459O1.2	RP11-459O1.2-001	NA	NA	NA	inter
CUST_43566_PI429285431	3.8172412	P	3.981022	P	0.892682593454334	0	lncRNA	48340-1_{1..380}	"gi|397138881|ref|XR_159050.1| PREDICTED: Homo sapiens uncharacterized LOC100996263 (LOC100996263), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397138881|ref|XR_159050.1| PREDICTED: Homo sapiens uncharacterized LOC100996263 (LOC100996263), misc_RNA"	Chr1	118139454	118139833	-	100996263	XR_159050.2	NA	NA	NA	NA	NA	inter
CUST_79_PI429285431	0.96479774	A	0.9803502	A	0.989277753715788	0	lncRNA	73-1_{1..548}	"transcript_id ""ENST00000334697.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000334697.3"" | genecode_v17"	chr18	  1269822	  1270369	-	ENSG00000132204.9	ENST00000334697.3	LINC00470	LINC00470-202	NA	NA	NA	inter
LNCA_21_P0001942	0.95671946	A	0.91952574	A	1.02611591931235	0	lncRNA	ENST00000419129	NA	NA	NA	NA	XLOC_001771	NA	ENST00000419129	NA	NA	"BROAD Institute lincRNA (XLOC_001771), lincRNA [TCONS_00003059]"	chr2:180150375-180150434	hs|2q31.2	Agilent_HUMAN_G3V2	ENST00000419129	ENST00000419129	chr2	180150375	180150434	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41152_PI429285431	2.7448783	A	1.40262	A	2.53547895537458	0	lncRNA	41958-1_{1..110}	ENST00000384849 ncrna:miRNA chromosome:GRCh37:9:131007000:131007109:-1 gene:ENSG00000207581 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384849 ncrna:miRNA chromosome:GRCh37:9:131007000:131007109:-1 gene:ENSG00000207581 gene_biotype:miRNA transcript_biotype:miRNA	chr9	131007000	131007109	-	ENSG00000207581	ENST00000384849	NA	NA	DNM1	NA	chr9:130997000-131017109	inner
CUST_9508_PI429285431	1.340998	A	3.2323534	P	0.269553696671147	0	lncRNA	11017-2_{3001..4279}	lnc-TMEM132D-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132D-3:3	chr12	130649507	130650785	-	lnc-TMEM132D-3	lnc-TMEM132D-3:3	XLOC_010263	linc-TMEM132D-1	FZD10	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90chr12:130647004-130650285"	NA	inter
CUST_532_PI429285431	0.9170944	A	0.90687156	A	1.00711109734776	0	lncRNA	524-1_{1..363}	"transcript_id ""ENST00000429469.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429469.1"" | genecode_v17"	chr1	198566854	198567216	-	ENSG00000223881.1	ENST00000429469.1	RP11-553K8.2	RP11-553K8.2-001	NA	NA	NA	inter
CUST_5569_PI429285431	2.6982846	A	2.5810533	A	1.08465129156017	0	lncRNA	5498-1_{1..572}	"transcript_id ""ENST00000568134.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568134.1"" | genecode_v17"	chr16	 58767816	 58768387	+	ENSG00000245768.2	ENST00000568134.1	RP11-410D17.2	RP11-410D17.2-002	GOT2	"hg19_refFlat_GOT2:range=chr16:58742075-587681325'pad=0,hg19_refFlat_GOT2:range=chr16:58742075-587681325'pad=0 3'pad=0 strand=- repeatMasking=none,-106.30chr16:58757816-58768246"	NA	inner
CUST_16620_PI429285431	7.16659	P	6.9120455	P	1.19295903235124	0	lncRNA	18320-1_{1..338}	lnc-RP11-890B15.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-890B15.2.1-2:1	chr11	130654163	130654500	-	lnc-RP11-890B15.2.1-2	lnc-RP11-890B15.2.1-2:1	XLOC_009606	linc-ADAMTS8-1	NA	NA	NA	inter
CUST_7497_PI429285431	2.2914834	A	1.1116874	A	2.26544740909145	0	lncRNA	9137-1_{1..2878}	lnc-ZCCHC24-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ZCCHC24-3:2	chr10	 80827145	 80830022	-	lnc-ZCCHC24-3	lnc-ZCCHC24-3:2	ENSG00000224596	RP11-202P11.1	ZMIZ1	NA	chr10:80828792-80837652	inter
CUST_17923_PI429285431	1.9318237	A	1.7842484	A	1.10770621374314	0	lncRNA	19655-1_{1..726}	lnc-KCNA5-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNA5-3:1	chr12	  5620753	  5621478	+	lnc-KCNA5-3	lnc-KCNA5-3:1	XLOC_009628	linc-CD9-4	NA	NA	NA	inter
CUST_36160_PI429285431	0.9074306	A	1.0780176	A	0.888481104735529	0	lncRNA	37433-1_{1..2575}	n344721|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_270|NULL|-1.2887700|-0.2063430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344721|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_270|NULL|-1.2887700|-0.2063430	chr7	 32954387	 32956961	-	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90"	NA	inter
CUST_23845_PI429285431	0.9261569	A	0.91920936	A	1.00482728172634	0	lncRNA	25408-1_{1..2335}	lnc-CGNL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CGNL1-1:1	chr15	 57982562	 57984896	+	lnc-CGNL1-1	lnc-CGNL1-1:1	ENSG00000261699.1	RP11-344A16.1	GCOM1	NA	chr15:57972562-57994896	inner
CUST_32868_PI429285431	1.1345453	A	0.9009584	A	1.17575453758981	0	lncRNA	34497-1_{1..1799}	n339532|AK097457|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1973|NULL|-1.1162100|-0.1808294	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339532|AK097457|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1973|NULL|-1.1162100|-0.1808294	chr3	128182436	128184234	+	NA	NA	NA	NA	GATA2	NA	chr3:128198265-128201160	inter
CUST_19798_PI429285431	0.92480993	A	0.9186011	A	1.0043129069367	0	lncRNA	21455-1_{1..1032}	lnc-RBFA-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBFA-1:2	chr18	 77853168	 77854199	+	lnc-RBFA-1	lnc-RBFA-1:2	ENSG00000261126.1	RP11-795F19.1	NA	NA	NA	inter
CUST_37953_PI429285431	1.5766474	A	2.0868974	A	0.702100762535934	0	lncRNA	39043-1_{1..578}	n346501|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2051|NULL|-1.3040600|-0.1768193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346501|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2051|NULL|-1.3040600|-0.1768193	chr2	220507808	220508385	+	NA	NA	NA	NA	SLC4A3	NA	chr2:220497808-220506702	inter
CUST_50734_PI429285431	3.1287906	P	2.9424472	P	1.13787604056741	0	lncRNA	54402-1_{1..866}	hg19_lincRNAsTranscripts_TCONS_l2_00003295 range=chr10:124432392-124439010 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003295 range=chr10:124432392-124439010 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	124432392	124433257	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15505_PI429285431	2.3360863	A	2.3414829	A	0.996266349396744	0	lncRNA	17194-2_{3001..3239}	lnc-RPP40-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-RPP40-1:1	chr6	  5057932	  5058170	-	lnc-RPP40-1	lnc-RPP40-1:1	XLOC_005592	linc-RPP40	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	inter
CUST_253_PI429285431	1.1856529	A	1.388091	A	0.86908060823644	0	lncRNA	245-1_{1..1798}	"transcript_id ""ENST00000439156.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439156.2"" | genecode_v17"	chr1	 61005921	 61007718	-	ENSG00000226476.2	ENST00000439156.2	RP11-776H12.1	RP11-776H12.1-001	NA	NA	NA	inter
LNCA_21_P0005364	0.92751664	A	0.9106059	A	1.0117905992849	0	lncRNA	TCONS_00013397	NA	NA	NA	NA	XLOC_006027	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006027), lincRNA [TCONS_00013397]"	chr7:27261270-27261329	hs|7p15.2	Agilent_HUMAN_G3V2	TCONS_00013397	TCONS_00013397	chr7	 27261270	 27261329	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31978_PI429285431	1.0985616	A	0.8961233	A	1.15064141249069	0	lncRNA	33701-1_{1..3000}	n338538|AK094916|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|940|NULL|-1.1758900|-0.4320777	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338538|AK094916|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|940|NULL|-1.1758900|-0.4320777	chr1	222897535	222900534	-	NA	NA	NA	NA	FAM177B	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BROX:range=chr1:222889042-2229060565'pad=0,hg19_refFlat_BROX:range=chr1:222889042-2229060565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00chr1:222910558-222924002"	NA	inner
CUST_19975_PI429285431	0.90199536	A	1.0459404	A	0.905040940094803	0	lncRNA	21628-1_{1..450}	lnc-AC115618.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC115618.1-1:1	chrX	 48439363	 48439812	-	lnc-AC115618.1-1	lnc-AC115618.1-1:1	ENSG00000228343.1	RP11-1148L6.5	RBM3	NA	chrX:48432741-48439553	inner
CUST_33705_PI429285431	1.048621	A	0.91357857	A	1.09812510942952	0	lncRNA	35265-1_{1..528}	n340483|AF271256|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2944|NULL|-0.6975570|-0.4616420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340483|AF271256|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2944|NULL|-0.6975570|-0.4616420	chr5	 64571202	 64571729	+	NA	NA	NA	NA	ADAMTS6	NA	chr5:64561202-64581730	inner
CUST_564_PI429285431	0.9411304	A	1.387867	A	0.733700615221833	0	lncRNA	556-1_{1..332}	"transcript_id ""ENST00000423842.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423842.1"" | genecode_v17"	chr1	212719036	212719367	+	ENSG00000228067.1	ENST00000423842.1	RP11-61J19.3	RP11-61J19.3-001	ATF3	NA	chr1:212738697-212739407	inter
LNCA_21_P0001995	8.435283	P	8.333799	P	1.07287648852465	0	lncRNA	ENST00000457371	NA	NA	NA	NA	XLOC_001954	NA	ENST00000457371	NA	NA	"BROAD Institute lincRNA (XLOC_001954), lincRNA [TCONS_00003165]"	chr2:4020564-4020505	hs|2p25.3	Agilent_HUMAN_G3V2	ENST00000457371	ENST00000457371	chr2	  4020505	  4020564	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10620_PI429285431	6.4441247	P	6.5483136	P	0.930327836785134	0	lncRNA	12151-1_{1..522}	lnc-OR51B6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR51B6-1:1	chr11	  5228064	  5228585	+	lnc-OR51B6-1	lnc-OR51B6-1:1	XLOC_009040	linc-OR51B6	OR51V1	NA	chr11:5220965-5221930	inter
CUST_13473_PI429285431	2.5835936	A	3.158669	A	0.671251168673902	0	lncRNA	15111-1_{1..406}	lnc-PANK3-12:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PANK3-12:2	chr5	166334930	166335335	-	lnc-PANK3-12	lnc-PANK3-12:2	XLOC_005072	linc-NUDCD2-3	NA	NA	NA	inter
CUST_4814_PI429285431	1.353028	A	1.3221376	A	1.02164246668009	0	lncRNA	4758-1_{1..446}	"transcript_id ""ENST00000555403.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555403.1"" | genecode_v17"	chr14	 50793244	 50793689	-	ENSG00000259071.1	ENST00000555403.1	RP11-247L20.4	RP11-247L20.4-001	CDKL1	NA	chr14:50796720-50804627	inter
CUST_26439_PI429285431	2.744423	A	2.3767862	A	1.29023763087559	0	lncRNA	27947-1_{1..506}	lnc-CMPK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CMPK2-1:1	chr2	  6980422	  6980927	-	lnc-CMPK2-1	lnc-CMPK2-1:1	ENSG00000225964.1	AC017076.5	CMPK2	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20chr2:6988451-6990595"	NA	inter
CUST_25335_PI429285431	1.2010009	A	1.2704723	A	0.952987106272053	0	lncRNA	26866-1_{1..532}	lnc-VCY1B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-VCY1B-2:1	chrY	 16915885	 16916416	-	lnc-VCY1B-2	lnc-VCY1B-2:1	ENSG00000228787.1	NLGN4Y-AS1	NLGN4Y	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chrY:16905885-16925913"	NA	inter
CUST_40665_PI429285431	1.8451898	A	2.4506404	A	0.657266062738111	0	lncRNA	41398-1_{1..1126}	n410218|NR_037169_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037169_3||-0.3727110|-0.2660452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410218|NR_037169_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037169_3||-0.3727110|-0.2660452	chr6	  3399751	  3400876	-	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.21;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90chr6:3389751-3411315"	NA	inner
CUST_31847_PI429285431	2.0363705	A	0.8926174	A	2.20955079905051	0	lncRNA	33580-1_{1..1274}	n338395|BC039325|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|791|NULL|-0.2658020|-0.2464584	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338395|BC039325|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|791|NULL|-0.2658020|-0.2464584	chr1	179922318	179923591	-	NA	NA	NA	NA	CEP350	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10chr1:179923908-179933575"	NA	inter
CUST_3270_PI429285431	4.201846	P	4.3701987	P	0.889858160354775	0	lncRNA	3248-1_{1..191}	"transcript_id ""ENST00000522330.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522330.1"" | genecode_v17"	chr8	112191422	112191612	-	ENSG00000253489.1	ENST00000522330.1	RP11-114O8.1	RP11-114O8.1-001	NA	NA	NA	inter
CUST_27713_PI429285431	0.91544837	A	0.92280823	A	0.99491152417104	0	lncRNA	29292-1_{1..429}	n324924|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079946|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079946|-0.6007900|-0.3932630	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324924|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079946|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079946|-0.6007900|-0.3932630	chr20	 58482853	 58483281	+	NA	NA	NA	NA	SYCP2	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SYCP2:range=chr20:58439366-584974685'pad=0,hg19_refFlat_SYCP2:range=chr20:58439366-584974685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00chr20:58472853-58499127"	NA	inner
LNCA_21_P0002177	4.183182	P	4.202752	P	0.986526698204032	0	lncRNA	TCONS_00003586	NA	NA	NA	NA	XLOC_001363	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001363), lincRNA [TCONS_00003586]"	chr2:15925919-15925978	hs|2p24.3	Agilent_HUMAN_G3V2	TCONS_00003586	TCONS_00003586	chr2	 15925919	 15925978	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10557_PI429285431	0.9071782	A	0.8961827	A	1.00765061737977	0	lncRNA	12088-1_{1..920}	lnc-DYNC1I1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DYNC1I1-1:3	chr7	 95311332	 95312251	+	lnc-DYNC1I1-1	lnc-DYNC1I1-1:3	XLOC_006179	linc-DYNC1I1-1	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30"	NA	inter
CUST_9092_PI429285431	2.5783436	A	1.6801674	A	1.86370846414614	0	lncRNA	10613-1_{1..1596}	lnc-CATSPERB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CATSPERB-1:1	chr14	 91969414	 91971009	-	lnc-CATSPERB-1	lnc-CATSPERB-1:1	ENSG00000248899	ENST00000506062	SMEK1	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80chr14:91959414-91976644"	NA	inner
LNCA_21_P0009016	0.9223108	A	0.9062345	A	1.01120555919687	0	lncRNA	TCONS_00024596	NA	NA	NA	NA	XLOC_011889	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011889), lincRNA [TCONS_00024596]"	chr16:19365690-19365631	hs|16p12.3	Agilent_HUMAN_G3V2	TCONS_00024596	TCONS_00024596	chr16	 19365631	 19365690	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51384_PI429285431	8.155542	P	8.110273	P	1.03187556136545	0	lncRNA	54975-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00009372 range=chr15:101087970-101098955 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009372 range=chr15:101087970-101098955 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	101087970	101090969	-	NA	NA	NA	NA	CERS3	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr15:101077970-101084925"	NA	inter
CUST_6920_PI429285431	1.2455562	A	1.0691426	A	1.1300711433423	0	lncRNA	6872-1_{1..500}	"transcript_id ""ENST00000442403.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442403.1"" | genecode_v17"	chr22	 17350368	 17350867	+	ENSG00000237689.1	ENST00000442403.1	AC007064.24	AC007064.24-001	NA	NA	NA	inter
CUST_48798_PI429285431	0.92756385	A	0.92554086	A	1.00140321339871	0	lncRNA	52636-1_{1..859}	hg19_lincRNAsTranscripts_TCONS_l2_00014278 range=chr2:227039495-227045238 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014278 range=chr2:227039495-227045238 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	227039495	227040353	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1542_PI429285431	3.092486	A	3.5897145	A	0.70846647951998	0	lncRNA	1529-1_{1..535}	"transcript_id ""ENST00000498413.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000498413.1"" | genecode_v17"	chr3	167110584	167111118	+	ENSG00000241669.1	ENST00000498413.1	RP11-576M8.2	RP11-576M8.2-001	NA	NA	NA	inter
CUST_47046_PI429285431	8.783267	P	9.424086	P	0.641348759718186	0	lncRNA	51135-1_{1..860}	"gi|336285457|ref|NR_038830.1| Homo sapiens peptidylprolyl cis/trans isomerase, NIMA-interacting 1 (PIN1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336285457|ref|NR_038830.1| Homo sapiens peptidylprolyl cis/trans isomerase, NIMA-interacting 1 (PIN1), transcript variant 3, non-coding RNA"	Chr19	  9945883	  9946742	+	5300	NR_038830.1	NA	NA	NA	NA	NA	inter
CUST_22266_PI429285431	1.3529497	A	0.8910472	A	1.37735695890612	0	lncRNA	23867-1_{1..1153}	lnc-PCP4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-PCP4-1:1	chr21	 41756506	 41757658	+	lnc-PCP4-1	lnc-PCP4-1:1	ENSG00000235123.1	DSCAM-AS1	DSCAM	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60chr21:41746506-41767285"	NA	inter
CUST_2815_PI429285431	9.602936	P	9.480849	P	1.08830806880925	0	lncRNA	2798-1_{1..505}	"transcript_id ""ENST00000584327.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584327.1"" | genecode_v17"	chr7	 45022736	 45023240	-	ENSG00000232956.3	ENST00000584327.1	SNHG15	SNHG15-010	MYO1G	NA	chr7:45012736-45018704	inter
LNCA_33_P3363690	2.1918776	A	2.442734	A	0.840397397811213	0	lncRNA	XR_132500	XR_132500	XR_132500	   391636	NA	LOC391636	chromosome 9 open reading frame 78 pseudogene	NA	NA	NA	"PREDICTED: Homo sapiens uncharacterized protein C9orf78-like (LOC391636), miscRNA [XR_132500]"	chr4:13979769-13979828	hs|4p15.33	Agilent_HUMAN_G3V2	XR_132500	XR_132500	chr4	 13979769	 13979828	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50351_PI429285431	5.204102	P	5.219877	P	0.989125166449421	0	lncRNA	54065-1_{1..1060}	hg19_lincRNAsTranscripts_TCONS_l2_00029134 range=chr9:139440724-139443253 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029134 range=chr9:139440724-139443253 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	139440724	139441783	+	NA	NA	NA	NA	NOTCH1	NA	chr9:139430724-139440238	inter
CUST_6981_PI429285431	2.5987487	A	2.8178377	A	0.859107754869902	0	lncRNA	6929-1_{1..519}	"transcript_id ""ENST00000450365.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450365.1"" | genecode_v17"	chr22	 34604130	 34604648	-	ENSG00000224404.1	ENST00000450365.1	LL22NC03-13G6.2	LL22NC03-13G6.2-001	NA	NA	NA	inter
LNCA_21_P0003405	0.9216075	A	0.90712464	A	1.010089310898	0	lncRNA	ENST00000508605	NA	NA	NA	NA	XLOC_003698	NA	ENST00000508605	THC2773438	NA	"BROAD Institute lincRNA (XLOC_003698), lincRNA [TCONS_00007629]"	chr4:135988523-135988582	hs|4q28.3	Agilent_HUMAN_G3V2	ENST00000508605	ENST00000508605	chr4	135988523	135988582	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21525_PI429285431	9.371036	P	9.40728	P	0.97519051564379	0	lncRNA	23143-1_{1..559}	lnc-SMARCC2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMARCC2-3:1	chr12	 56523025	 56523583	-	lnc-SMARCC2-3	lnc-SMARCC2-3:1	ENSG00000258317.1	RP11-603J24.5	ESYT1	"hg19_refFlat_ESYT1:range=chr12:56522104-565376465'pad=0,hg19_refFlat_ESYT1:range=chr12:56522104-565376465'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.80chr12:56521986-56533403"	NA	inner
CUST_35157_PI429285431	0.92649186	A	0.9233301	A	1.00219396826354	0	lncRNA	36559-1_{1..2514}	n342129|BC030588|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4613|NULL|-0.8361360|-0.3538571	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342129|BC030588|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4613|NULL|-0.8361360|-0.3538571	chr6	133562510	133565023	+	NA	NA	NA	NA	EYA4	NA	chr6:133562495-133579991	inner
LNCA_21_P0014120	6.764465	P	6.917326	P	0.899464969136519	0	lncRNA	XR_108496	XR_108496	XR_108496	NA	NA	LOC100507291	uncharacterized LOC100507291	NA	THC2534387	NA	"PREDICTED: Homo sapiens hypothetical LOC100507291, transcript variant 2 (LOC100507291), miscRNA [XR_108496]"	chr3:139163387-139163446	hs|3q23	Agilent_HUMAN_G3V2	XR_108496	XR_108496	chr3	139163387	139163446	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18078_PI429285431	3.542821	P	3.5123107	P	1.021373334854	0	lncRNA	19813-1_{1..289}	lnc-PLEK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLEK-1:1	chr2	 68591421	 68591709	+	lnc-PLEK-1	lnc-PLEK-1:1	XLOC_001516	linc-PLEK	PLEK	NA	chr2:68592322-68601456	inter
LNCA_33_P3384045	1.4804866	A	2.6455667	A	0.44593949997597	0	lncRNA	XR_110862	XR_110862	XR_110862	100131275	Hs.623961	NSAP11	nervous system abundant protein 11	NA	THC2490572	NA	"PREDICTED: Homo sapiens nervous system abundant protein 11 (NSAP11), miscRNA [XR_110862]"	chr8:18591156-18591215	hs|8p22	Agilent_HUMAN_G3V2	XR_110862	XR_110862	chr8	 18591156	 18591215	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24589_PI429285431	7.1393023	P	7.383354	P	0.844370628261285	0	lncRNA	26138-1_{1..1618}	lnc-MAT2B-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MAT2B-3:9	chr5	164027981	164029598	+	lnc-MAT2B-3	lnc-MAT2B-3:9	ENSG00000241956.5	CTC-340A15.2	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RPS15:range=chr19:1438425-14404615'pad=0,hg19_refFlat_RPS15:range=chr19:1438425-14404615'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-58.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00"	NA	inter
CUST_26621_PI429285431	0.9143963	A	1.500736	A	0.666030569126765	0	lncRNA	28124-1_{1..444}	lnc-ALX4-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALX4-6:1	chr11	 43407165	 43407608	-	lnc-ALX4-6	lnc-ALX4-6:1	ENSG00000255340.1	RP11-484D2.5	TTC17	"hg19_refFlat_TTC17:range=chr11:43380505-435154545'pad=0,hg19_refFlat_TTC17:range=chr11:43380505-435154545'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60chr11:43397165-43417221"	NA	inner
CUST_6317_PI429285431	0.9040278	A	0.89561427	A	1.00584885273379	0	lncRNA	6240-2_{3001..3733}	"transcript_id ""ENST00000448587.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000448587.1"" | genecode_v17"	chr19	  5561178	  5561910	-	ENSG00000223573.2	ENST00000448587.1	TINCR	TINCR-001	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20"	NA	inter
CUST_38586_PI429285431	1.4452561	A	1.3033726	A	1.10334463954816	0	lncRNA	39597-1_{1..1275}	n383635|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002rzk.2||0.4251640|-0.2836911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383635|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002rzk.2||0.4251640|-0.2836911	chr2	 56179292	 56180566	+	NA	NA	NA	NA	CCDC85A	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10chr2:56411258-56418787"	NA	inter
CUST_34994_PI429285431	0.9214644	A	1.2154038	A	0.815671754682403	0	lncRNA	36407-1_{1..1507}	n341919|BC034008|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4400|NULL|-1.1440400|-0.2223165	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341919|BC034008|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4400|NULL|-1.1440400|-0.2223165	chr12	 52389346	 52390852	-	NA	NA	NA	NA	ACVR1B	NA	chr12:52379346-52390863	inner
CUST_39045_PI429285431	7.818204	P	8.043431	P	0.855460413178638	0	lncRNA	40024-1_{1..1364}	n385475|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zhu.2||1.0844500|-0.3043987	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385475|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zhu.2||1.0844500|-0.3043987	chr9	  3479873	  3481236	+	NA	NA	NA	NA	RFX3	NA	chr9:3469873-3491237	inner
CUST_43378_PI429285431	1.7857032	A	1.804069	A	0.987350483791834	0	lncRNA	48192-1_{1..655}	"gi|397138839|ref|XR_158976.1| PREDICTED: Homo sapiens uncharacterized LOC100996592 (LOC100996592), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138839|ref|XR_158976.1| PREDICTED: Homo sapiens uncharacterized LOC100996592 (LOC100996592), misc_RNA"	Chr1	  6843952	  6844606	-	100996592	XR_158976.1	NA	NA	NA	NA	NA	inter
CUST_48365_PI429285431	1.0745791	A	0.9217774	A	1.11172633902229	0	lncRNA	52219-2_{3001..3879}	hg19_lincRNAsTranscripts_TCONS_l2_00000383 range=chr1:89873172-89893634 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000383 range=chr1:89873172-89893634 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 89876172	 89877050	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006501	2.6496449	A	3.7592	P	0.463436924137081	0	lncRNA	TCONS_00017186	NA	NA	NA	NA	XLOC_007999	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007999), lincRNA [TCONS_00017186]"	chrX:64271980-64272039	hs|Xq11.2	Agilent_HUMAN_G3V2	TCONS_00017186	TCONS_00017186	chrX	 64271980	 64272039	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24452_PI429285431	0.94174623	A	0.905376	A	1.02553037970869	0	lncRNA	26005-1_{1..774}	lnc-MAT2B-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAT2B-3:6	chr5	163981757	163982530	+	lnc-MAT2B-3	lnc-MAT2B-3:6	ENSG00000241956.5	CTC-340A15.2	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.60"	NA	inter
CUST_37463_PI429285431	7.259145	P	7.494867	P	0.84925987874194	0	lncRNA	38562-1_{1..287}	n345916|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1465|NULL|-1.2737700|-0.0898764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345916|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1465|NULL|-1.2737700|-0.0898764	chr2	114341440	114341726	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36946_PI429285431	5.4312844	P	5.9480824	P	0.698921339056716	0	lncRNA	38101-1_{1..3000}	n345417|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_966|NULL|-1.3111500|-0.4156690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345417|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_966|NULL|-1.3111500|-0.4156690	chr1	198771346	198774345	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70"	NA	inter
CUST_7830_PI429285431	5.7136793	P	6.278054	P	0.676248455945214	0	lncRNA	9454-1_{1..623}	lnc-AC009336.1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC009336.1-2:4	chr2	177053147	177053769	-	lnc-AC009336.1-2	lnc-AC009336.1-2:4	ENSG00000224189	AC009336.23	HOXD1	NA	chr2:177053307-177055635	inter
CUST_29030_PI429285431	2.7353106	A	2.9672348	P	0.851498444775646	0	lncRNA	30759-1_{1..1013}	n326520|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030084|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030084|-1.2390800|-0.3175421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326520|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030084|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030084|-1.2390800|-0.3175421	chr1	 95594162	 95595174	-	NA	NA	NA	NA	TMEM56-RWDD3	NA	chr1:95584162-95629144	inner
CUST_1432_PI429285431	0.9029341	A	0.89857095	A	1.00302888294534	0	lncRNA	1421-1_{1..378}	"transcript_id ""ENST00000477643.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000477643.1"" | genecode_v17"	chr3	108855688	108856065	+	ENSG00000241224.2	ENST00000477643.1	RP11-59E19.1	RP11-59E19.1-002	NA	NA	NA	inter
CUST_3958_PI429285431	0.92727363	A	0.91598517	A	1.00785525612252	0	lncRNA	3928-1_{1..749}	"transcript_id ""ENST00000527161.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527161.1"" | genecode_v17"	chr11	 60414754	 60415502	+	ENSG00000181995.7	ENST00000527161.1	LINC00301	LINC00301-003	NA	NA	NA	inter
CUST_35413_PI429285431	1.5869744	A	1.1042602	A	1.39737012336245	0	lncRNA	36823-1_{1..1811}	n342474|AF115510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4968|NULL|9.1632600|-0.3185668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342474|AF115510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4968|NULL|9.1632600|-0.3185668	chr2	238617184	238618994	+	NA	NA	NA	NA	LRRFIP1	NA	chr2:238607184-238690290	inner
CUST_16051_PI429285431	8.264069	P	8.606073	P	0.788944653430384	0	lncRNA	17751-1_{1..598}	lnc-TBC1D22A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBC1D22A-1:2	chr22	 47604255	 47604852	+	lnc-TBC1D22A-1	lnc-TBC1D22A-1:2	XLOC_014272	linc-FAM19A5-8	NA	NA	NA	inter
CUST_40488_PI429285431	2.0687432	A	2.7093017	A	0.641464575210501	0	lncRNA	41253-1_{1..2609}	n409423|NR_033821_6|lncRNA|Homosapiens||RefGeneNoncode|NR_033821_6||-1.1741700|-0.3711521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409423|NR_033821_6|lncRNA|Homosapiens||RefGeneNoncode|NR_033821_6||-1.1741700|-0.3711521	chr6	  2106665	  2109273	+	NA	NA	NA	NA	GMDS	NA	chr6:2096665-2134499	inner
CUST_35921_PI429285431	3.8865454	P	4.3912697	P	0.704795051514429	0	lncRNA	37288-3_{6001..8730}	n344563|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_111|NULL|-1.4073800|-0.2503648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344563|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_111|NULL|-1.4073800|-0.2503648	chr22	 27059225	 27061954	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49260_PI429285431	0.9243472	A	0.92601824	A	0.998842393878896	0	lncRNA	53079-1_{1..680}	hg19_lincRNAsTranscripts_TCONS_l2_00023491 range=chr5:98825263-98835071 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023491 range=chr5:98825263-98835071 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 98825263	 98825942	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36992_PI429285431	2.180917	A	1.5649004	A	1.53263759500723	0	lncRNA	38137-1_{1..3000}	n345453|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1002|NULL|-1.3257800|-0.3458925	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n345453|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1002|NULL|-1.3257800|-0.3458925	chr1	 98440837	 98443836	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32179_PI429285431	3.9881246	P	4.6224985	P	0.644220332483459	0	lncRNA	33878-1_{1..1700}	n338751|BC032065|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1172|NULL|9.1302400|-0.1128942	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338751|BC032065|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1172|NULL|9.1302400|-0.1128942	chr19	 48111452	 48113151	+	NA	NA	NA	NA	GLTSCR1	NA	chr19:48111453-48194061	inner
CUST_2483_PI429285431	1.0275669	A	1.1771183	A	0.901530746253894	0	lncRNA	2475-1_{1..470}	"transcript_id ""ENST00000455973.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455973.1"" | genecode_v17"	chr6	 14230006	 14230475	-	ENSG00000230631.1	ENST00000455973.1	RP11-359N11.1	RP11-359N11.1-001	NA	NA	NA	inter
CUST_48756_PI429285431	0.9143793	A	0.90876216	A	1.00390109429021	0	lncRNA	52593-1_{1..382}	hg19_lincRNAsTranscripts_TCONS_l2_00014013 range=chr2:145279356-145336881 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014013 range=chr2:145279356-145336881 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	145279356	145279737	+	NA	NA	NA	NA	ZEB2	NA	chr2:145269356-145277958	inter
CUST_19908_PI429285431	0.92028785	A	0.92350376	A	0.997773383646635	0	lncRNA	21563-1_{1..431}	lnc-FBXO25-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXO25-5:3	chr8	   860386	   860816	+	lnc-FBXO25-5	lnc-FBXO25-5:3	ENSG00000237647.4	ERICH1-AS1	NA	NA	NA	inter
CUST_17562_PI429285431	5.413121	P	5.041912	P	1.29343629553547	0	lncRNA	19290-1_{1..2034}	lnc-ADAMTSL4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAMTSL4-1:1	chr1	150508143	150510176	+	lnc-ADAMTSL4-1	lnc-ADAMTSL4-1:1	XLOC_000403	linc-ADAMTSL4	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_107_PI429285431	0.93110424	A	0.9280211	A	1.00213935495949	0	lncRNA	99-1_{1..635}	"transcript_id ""ENST00000601814.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601814.1"" | genecode_v17"	chr1	   323861	   324495	+	ENSG00000237094.6	ENST00000601814.1	RP4-669L17.10	RP4-669L17.10-007	LOC100288646	NA	chr1:327463-342507	inter
CUST_33848_PI429285431	8.842054	P	8.731819	P	1.07940404586498	0	lncRNA	35393-1_{1..1431}	n340634|BC029278|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3096|NULL|8.2052500|-0.0201708	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340634|BC029278|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3096|NULL|8.2052500|-0.0201708	chr17	 36718157	 36719587	-	NA	NA	NA	NA	SRCIN1	NA	chr17:36708157-36762183	inner
CUST_40645_PI429285431	0.92046607	A	0.91107476	A	1.00653079328228	0	lncRNA	41384-1_{1..1077}	n410174|NR_036675|lncRNA|Homosapiens||RefGeneNoncode|NR_036675||2.4081900|-0.1880704	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410174|NR_036675|lncRNA|Homosapiens||RefGeneNoncode|NR_036675||2.4081900|-0.1880704	chr14	 31952149	 31953225	-	NA	NA	NA	NA	GPR33	NA	chr14:31942149-31957151	inner
CUST_50719_PI429285431	1.9144845	A	0.9157995	A	1.99817785347412	0	lncRNA	54388-1_{1..230}	hg19_lincRNAsTranscripts_TCONS_l2_00003148 range=chr10:89356248-89367779 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003148 range=chr10:89356248-89367779 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 89356248	 89356477	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50794_PI429285431	3.2004077	P	3.3886735	P	0.877660083917587	0	lncRNA	54448-1_{1..434}	hg19_lincRNAsTranscripts_TCONS_l2_00004356 range=chr11:3655591-3656686 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004356 range=chr11:3655591-3656686 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	  3655591	  3656024	+	NA	NA	NA	NA	ART1	NA	chr11:3666361-3666686	inter
CUST_12070_PI429285431	0.9258932	A	0.9183401	A	1.00524913867627	0	lncRNA	13661-1_{1..1037}	lnc-NCAM2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCAM2-7:1	chr21	 24743727	 24744763	+	lnc-NCAM2-7	lnc-NCAM2-7:1	XLOC_013881	linc-JAM2-9	NA	NA	NA	inter
CUST_23910_PI429285431	0.95331275	A	0.9181485	A	1.02467347487762	0	lncRNA	25467-1_{1..830}	lnc-UTS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UTS2-1:1	chr1	  7887164	  7887993	-	lnc-UTS2-1	lnc-UTS2-1:1	ENSG00000236266.1	RP3-467L1.4	PER3	"hg19_refFlat_PER3:range=chr1:7844938-79028155'pad=0,hg19_refFlat_PER3:range=chr1:7844938-79028155'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.30chr1:7877164-7897402"	NA	inner
CUST_2390_PI429285431	8.085292	P	8.263264	P	0.883944686602677	0	lncRNA	2383-1_{1..312}	"transcript_id ""ENST00000507391.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507391.1"" | genecode_v17"	chr5	145780544	145780855	+	ENSG00000248842.1	ENST00000507391.1	CTB-1H10.1	CTB-1H10.1-001	NA	NA	NA	inter
CUST_2769_PI429285431	0.90257174	A	0.8988051	A	1.00261424709627	0	lncRNA	2752-1_{1..312}	"transcript_id ""ENST00000438923.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438923.1"" | genecode_v17"	chr7	 15728700	 15729011	-	ENSG00000225974.1	ENST00000438923.1	AC005550.5	AC005550.5-001	MEOX2	NA	chr7:15718700-15726308	inter
CUST_37979_PI429285431	1.0032302	A	0.9988537	A	1.00303816453096	0	lncRNA	39066-2_{3001..3515}	n346534|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2084|NULL|-1.3984300|-0.3511436	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346534|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2084|NULL|-1.3984300|-0.3511436	chrX	121364030	121364544	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5623_PI429285431	3.6947818	P	3.6275203	P	1.04772601859941	0	lncRNA	5551-1_{1..739}	"transcript_id ""ENST00000568714.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568714.1"" | genecode_v17"	chr16	 76262283	 76263021	-	ENSG00000260983.1	ENST00000568714.1	RP11-150D5.2	RP11-150D5.2-001	CNTNAP4	NA	chr16:76268915-76306263	inter
CUST_1732_PI429285431	2.5663228	A	3.0516849	P	0.714317761758592	0	lncRNA	1718-1_{1..546}	"transcript_id ""ENST00000513843.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513843.1"" | genecode_v17"	chr4	 34122516	 34123061	-	ENSG00000248685.1	ENST00000513843.1	RP11-548L20.1	RP11-548L20.1-001	NA	NA	NA	inter
CUST_26632_PI429285431	1.699918	A	0.907953	A	1.73143112574868	0	lncRNA	28135-1_{1..508}	lnc-PCDH10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PCDH10-1:1	chr4	133599578	133600085	+	lnc-PCDH10-1	lnc-PCDH10-1:1	ENSG00000251398.1	RP11-149A7.2	NA	NA	NA	inter
CUST_40474_PI429285431	7.264503	P	6.530941	P	1.66273931500916	0	lncRNA	41242-2_{3001..5376}	n409406|NR_033805|lncRNA|Homosapiens||RefGeneNoncode|NR_033805||0.3515550|-0.2866571	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n409406|NR_033805|lncRNA|Homosapiens||RefGeneNoncode|NR_033805||0.3515550|-0.2866571	chr10	 28811845	 28814220	-	NA	NA	NA	NA	WAC	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.24;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70chr10:28821427-28831283"	NA	inter
CUST_42981_PI429285431	0.9193146	A	0.91019654	A	1.00634017191948	0	lncRNA	46131-1_{1..71}	ENST00000516686 ncrna:snoRNA chromosome:GRCh37:1:246970417:246970487:1 gene:ENSG00000252495 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516686 ncrna:snoRNA chromosome:GRCh37:1:246970417:246970487:1 gene:ENSG00000252495 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	246970417	246970487	+	ENSG00000252495	ENST00000516686	NA	NA	NA	NA	NA	inter
CUST_42086_PI429285431	3.5017815	P	3.7152658	P	0.862451778488168	0	lncRNA	44018-1_{1..83}	ENST00000408529 ncrna:miRNA chromosome:GRCh37:6:156267931:156268013:1 gene:ENSG00000221456 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408529 ncrna:miRNA chromosome:GRCh37:6:156267931:156268013:1 gene:ENSG00000221456 gene_biotype:miRNA transcript_biotype:miRNA	chr6	156267931	156268013	+	ENSG00000221456	ENST00000408529	NA	NA	NA	NA	NA	inter
CUST_21570_PI429285431	5.4219937	P	5.452696	P	0.978943634493425	0	lncRNA	23184-1_{1..415}	lnc-MYLPF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYLPF-1:1	chr16	 30367614	 30368028	+	lnc-MYLPF-1	lnc-MYLPF-1:1	ENSG00000260219.1	RP11-347C12.10	TBC1D10B	NA	chr16:30368422-30377848	inter
CUST_18338_PI429285431	0.9121207	A	0.90964603	A	1.00171678251995	0	lncRNA	20067-1_{1..510}	lnc-AC005493.1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC005493.1-1:6	chr7	 34800724	 34801233	-	lnc-AC005493.1-1	lnc-AC005493.1-1:6	ENSG00000197085	AC005688.1	NPSR1	NA	chr7:34790724-34810803	inter
CUST_40853_PI429285431	3.2071004	P	3.436582	A	0.85294132198177	0	lncRNA	41555-2_{3001..3390}	n410628|NR_037867|lncRNA|Homosapiens||RefGeneNoncode|NR_037867||0.1364550|-0.2345765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410628|NR_037867|lncRNA|Homosapiens||RefGeneNoncode|NR_037867||0.1364550|-0.2345765	chr4	185767449	185767838	-	NA	NA	NA	NA	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
CUST_45965_PI429285431	10.093425	P	10.403027	P	0.806864320261487	0	lncRNA	50258-1_{1..2816}	"gi|302148457|ref|NR_036467.1| Homo sapiens intermediate filament family orphan 1 (IFFO1), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302148457|ref|NR_036467.1| Homo sapiens intermediate filament family orphan 1 (IFFO1), transcript variant 7, non-coding RNA"	Chr12	  6648694	  6651509	-	25900	NR_036467.1	NA	NA	NA	NA	NA	inter
CUST_41746_PI429285431	1.3742247	A	1.8144588	A	0.737015006645682	0	lncRNA	43289-1_{1..81}	ENST00000384906 ncrna:miRNA chromosome:GRCh37:21:17911409:17911489:1 gene:ENSG00000207638 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384906 ncrna:miRNA chromosome:GRCh37:21:17911409:17911489:1 gene:ENSG00000207638 gene_biotype:miRNA transcript_biotype:miRNA	chr21	 17911409	 17911489	+	ENSG00000207638	ENST00000384906	NA	NA	NA	NA	NA	inter
CUST_47770_PI429285431	2.173181	A	2.4796224	A	0.808633904790182	0	lncRNA	51702-2_{3001..6000}	"gi|385137060|ref|NR_047598.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 28, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137060|ref|NR_047598.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 28, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047598.1	NA	NA	NA	NA	NA	inter
CUST_21148_PI429285431	5.792425	P	5.836944	P	0.96961303571556	0	lncRNA	22771-1_{1..583}	lnc-PTPN9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPN9-1:1	chr15	 75893479	 75894061	-	lnc-PTPN9-1	lnc-PTPN9-1:1	ENSG00000260269.1	CTD-2323K18.1	SNUPN	NA	chr15:75890424-75903546	inner
CUST_2028_PI429285431	5.695061	P	6.0580773	P	0.777537250984552	0	lncRNA	2019-1_{1..979}	"transcript_id ""ENST00000511785.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000511785.1"" | genecode_v17"	chr4	190742266	190743244	-	ENSG00000245685.2	ENST00000511785.1	AF146191.4	AF146191.4-001	NA	NA	NA	inter
LNCA_21_P0004042	1.9612037	A	0.923234	A	2.05333596608685	0	lncRNA	ENST00000501405	NA	NA	NA	NA	XLOC_004494	NA	ENST00000501405	NA	NA	"BROAD Institute lincRNA (XLOC_004494), lincRNA [TCONS_00009476]"	chr5:101941383-101941442	hs|5q21.1	Agilent_HUMAN_G3V2	ENST00000501405	ENST00000501405	chr5	101941383	101941442	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42353_PI429285431	9.292698	P	9.088704	P	1.15188285179329	0	lncRNA	45018-1_{1..128}	ENST00000384737 ncrna:snoRNA chromosome:GRCh37:10:120819523:120819650:-1 gene:ENSG00000207468 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384737 ncrna:snoRNA chromosome:GRCh37:10:120819523:120819650:-1 gene:ENSG00000207468 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	120819523	120819650	-	ENSG00000207468	ENST00000384737	NA	NA	EIF3A	NA	chr10:120809523-120829650	inner
CUST_47914_PI429285431	7.63349	P	7.5518556	P	1.05821619345036	0	lncRNA	51805-1_{1..683}	"gi|410172039|ref|XR_171556.1| PREDICTED: Homo sapiens uncharacterized LOC100506631 (LOC100506631), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172039|ref|XR_171556.1| PREDICTED: Homo sapiens uncharacterized LOC100506631 (LOC100506631), misc_RNA"	NA	NA	NA	NA	NA	XR_171556.1	NA	NA	NA	NA	NA	Unknown
CUST_46044_PI429285431	8.31049	P	7.572648	P	1.66767943797498	0	lncRNA	50321-1_{1..1663}	"gi|344030200|ref|NR_045020.1| Homo sapiens LETM1 domain containing 1 (LETMD1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|344030200|ref|NR_045020.1| Homo sapiens LETM1 domain containing 1 (LETMD1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NR_045020.1	NA	NA	NA	NA	NA	Unknown
CUST_19555_PI429285431	0.9072807	A	0.9045323	A	1.00190686146348	0	lncRNA	21211-1_{1..664}	lnc-BMP2K-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BMP2K-1:4	chr4	 80220155	 80220818	+	lnc-BMP2K-1	lnc-BMP2K-1:4	ENSG00000249307.1	RP11-438E5.1	NA	NA	NA	inter
CUST_25349_PI429285431	9.505657	P	9.311896	P	1.14374148280554	0	lncRNA	26880-1_{1..3000}	lnc-SAMD14-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAMD14-2:1	chr17	 48226508	 48229507	-	lnc-SAMD14-2	lnc-SAMD14-2:1	ENSG00000108819.9	PPP1R9B	PPP1R9B	NA	chr17:48216508-48227877	inner
CUST_35135_PI429285431	2.1006184	A	3.564638	P	0.362481783623025	0	lncRNA	36537-1_{1..888}	n342103|BC030091|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4585|NULL|-1.1474300|-0.2897492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342103|BC030091|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4585|NULL|-1.1474300|-0.2897492	chr6	109703997	109704884	+	NA	NA	NA	NA	PPIL6	NA	chr6:109711418-109714869	inter
CUST_28589_PI429285431	5.0424395	P	5.780115	P	0.59970483109143	0	lncRNA	30269-1_{1..3000}	n325950|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048467|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048467|0.4220620|-0.3230762	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325950|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048467|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048467|0.4220620|-0.3230762	chr10	 71096997	 71099996	+	NA	NA	NA	NA	HK1	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-46.31;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30chr10:71086997-71158005"	NA	inner
CUST_33779_PI429285431	2.1630645	A	2.319895	A	0.896993539849476	0	lncRNA	35332-1_{1..2245}	n340565|AK094985|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3027|NULL|1.9926100|-0.2057311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340565|AK094985|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3027|NULL|1.9926100|-0.2057311	chr5	 96149730	 96151974	-	NA	NA	NA	NA	LNPEP	NA	chr5:96271346-96281513	inner
CUST_17107_PI429285431	6.9958405	P	7.0244956	P	0.980333752252	0	lncRNA	18817-1_{1..650}	lnc-TMEM30B-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM30B-3:3	chr14	 62037204	 62037853	-	lnc-TMEM30B-3	lnc-TMEM30B-3:3	XLOC_011047	linc-TMEM30B	NA	NA	NA	inter
CUST_31063_PI429285431	0.90602314	A	1.6255927	A	0.60727860176544	0	lncRNA	32853-1_{1..425}	n337293|BC128417|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389828|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389828|1.6576000|-0.0777729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337293|BC128417|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389828|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389828|1.6576000|-0.0777729	chr19	 36594393	 36594817	+	NA	NA	NA	NA	WDR62	NA	chr19:36584393-36596012	inner
CUST_36734_PI429285431	4.965131	P	5.1365304	P	0.887980930520465	0	lncRNA	37910-1_{1..947}	n345217|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_766|NULL|-1.4316600|-0.1841630	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345217|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_766|NULL|-1.4316600|-0.1841630	chr13	 40762764	 40763710	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19236_PI429285431	0.90724826	A	0.9012824	A	1.00414378085446	0	lncRNA	20905-1_{1..714}	lnc-SETD6-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SETD6-7:1	chr16	 61974146	 61974859	+	lnc-SETD6-7	lnc-SETD6-7:1	ENSG00000260115.1	CTC-420A11.2	CDH8	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr16:61964146-61984601"	NA	inner
CUST_23339_PI429285431	1.3034263	A	2.2715802	A	0.51115973425234	0	lncRNA	24908-1_{1..535}	lnc-DHFR-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHFR-2:1	chr5	 80256600	 80257134	-	lnc-DHFR-2	lnc-DHFR-2:1	ENSG00000251450.1	CTC-459I6.1	RASGRF2	"hg19_refFlat_RASGRF2:range=chr5:80256558-805215895'pad=0,hg19_refFlat_RASGRF2:range=chr5:80256558-805215895'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.60chr5:80256558-80266726"	NA	inner
CUST_42891_PI429285431	0.93268436	A	0.93085027	A	1.00127210274956	0	lncRNA	45982-1_{1..65}	ENST00000516756 ncrna:snoRNA chromosome:GRCh37:8:10641565:10641629:1 gene:ENSG00000252565 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516756 ncrna:snoRNA chromosome:GRCh37:8:10641565:10641629:1 gene:ENSG00000252565 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	 10641565	 10641629	+	ENSG00000252565	ENST00000516756	NA	NA	PINX1	NA	chr8:10631565-10651629	inner
LNCA_21_P0014431	5.2541533	P	5.606924	P	0.78307874784405	0	lncRNA	ENST00000458178	XR_109748	XR_109748	NA	Hs.659180	LOC100286925	NA	ENST00000458178	THC2788529	NA	"PREDICTED: Homo sapiens hypothetical LOC100286925 (LOC100286925), miscRNA [XR_109748]"	chr22:22297706-22297765	hs|22q11.22	Agilent_HUMAN_G3V2	ENST00000458178	ENST00000458178	chr22	 22297706	 22297765	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45462_PI429285431	7.159539	P	7.4018826	P	0.845370925319469	0	lncRNA	49877-1_{1..537}	"gi|310124547|ref|XR_110095.1| PREDICTED: Homo sapiens FP7915 protein (LOC401561), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124547|ref|XR_110095.1| PREDICTED: Homo sapiens FP7915 protein (LOC401561), misc_RNA"	Chr9	139510734	139511270	-	401561	XR_110095.2	NA	NA	NA	NA	NA	inter
CUST_3048_PI429285431	1.1788132	A	1.2311502	A	0.964372889829981	0	lncRNA	3027-1_{1..485}	"transcript_id ""ENST00000520386.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520386.1"" | genecode_v17"	chr8	 25691645	 25692129	-	ENSG00000254178.1	ENST00000520386.1	RP11-299D14.2	RP11-299D14.2-001	EBF2	NA	chr8:25701573-25707651	inter
CUST_14102_PI429285431	0.915107	A	0.9088308	A	1.00435980675852	0	lncRNA	15748-1_{1..273}	lnc-VLDLR-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VLDLR-2:1	chr9	  2429811	  2430083	+	lnc-VLDLR-2	lnc-VLDLR-2:1	XLOC_007266	linc-VLDLR-2	NA	NA	NA	inter
CUST_14621_PI429285431	7.327422	P	7.632642	P	0.809318792188435	0	lncRNA	16292-1_{1..586}	lnc-ZNF438-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF438-3:1	chr10	 31099138	 31099723	-	lnc-ZNF438-3	lnc-ZNF438-3:1	XLOC_008768	linc-LYZL2-2	NA	NA	NA	inter
LNCA_21_P0009145	0.9587171	A	0.92025524	A	1.02701827960388	0	lncRNA	TCONS_00025089	NA	NA	NA	NA	XLOC_012048	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012048), lincRNA [TCONS_00025089]"	chr16:86754698-86754639	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00025089	TCONS_00025089	chr16	 86754639	 86754698	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35884_PI429285431	0.91011685	A	0.9110115	A	0.999380068112138	0	lncRNA	37271-1_{1..356}	n344546|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_94|NULL|-1.8055400|-0.1645328	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344546|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_94|NULL|-1.8055400|-0.1645328	chr5	173205290	173205645	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21743_PI429285431	2.3698967	P	2.1950831	A	1.1288185490535	0	lncRNA	23353-1_{1..699}	lnc-MAPK15-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAPK15-3:1	chr8	144871931	144872629	+	lnc-MAPK15-3	lnc-MAPK15-3:1	ENSG00000214733.4	RP11-429J17.8	SCRIB	NA	chr8:144873090-144882305	inter
CUST_15093_PI429285431	1.4135444	A	1.9810424	A	0.674786024791707	0	lncRNA	16756-1_{1..1219}	lnc-SDIM1-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SDIM1-3:7	chr6	166324296	166325514	-	lnc-SDIM1-3	lnc-SDIM1-3:7	XLOC_005918	linc-PDE10A-4	NA	NA	NA	inter
CUST_27218_PI429285431	0.9100164	A	0.90582883	A	1.00290681896781	0	lncRNA	28761-1_{1..453}	n324351|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042590|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042590|-1.0523500|-0.3418306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324351|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042590|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042590|-1.0523500|-0.3418306	chr6	147521753	147522205	+	NA	NA	NA	NA	STXBP5	NA	chr6:147525494-147553821	inner
LNCA_21_P0008357	9.517607	P	9.286871	P	1.17343343104595	0	lncRNA	TCONS_00022558	NA	NA	NA	NA	XLOC_010878	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010878), lincRNA [TCONS_00022558]"	chr14:76731149-76731208	hs|14q24.3	Agilent_HUMAN_G3V2	TCONS_00022558	TCONS_00022558	chr14	 76731149	 76731208	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47008_PI429285431	1.4140062	A	0.9080578	A	1.4200565673317	0	lncRNA	51104-2_{3001..3123}	"gi|334085283|ref|NR_038325.1| Homo sapiens uncharacterized LOC100505776 (LOC100505776), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|334085283|ref|NR_038325.1| Homo sapiens uncharacterized LOC100505776 (LOC100505776), transcript variant 1, non-coding RNA"	Chr18	 69190200	 69190322	-	100505776	NR_038325.1	NA	NA	NA	NA	NA	inter
CUST_16301_PI429285431	4.9509435	P	5.095721	P	0.904518866450662	0	lncRNA	18007-1_{1..661}	lnc-GBP5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GBP5-2:1	chr1	 90098216	 90098876	-	lnc-GBP5-2	lnc-GBP5-2:1	XLOC_000909	linc-GBP5-2	LRRC8C	NA	chr1:90098644-90108553	inter
CUST_51282_PI429285431	2.3297293	A	2.1429157	A	1.13824695506865	0	lncRNA	54888-1_{1..512}	hg19_lincRNAsTranscripts_TCONS_l2_00008528 range=chr15:30846790-30847482 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008528 range=chr15:30846790-30847482 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 30846790	 30847301	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13935_PI429285431	0.9189687	A	1.109519	A	0.876271413562737	0	lncRNA	15582-1_{1..437}	lnc-TAF4B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TAF4B-3:1	chr18	 24402332	 24402768	+	lnc-TAF4B-3	lnc-TAF4B-3:1	XLOC_012648	linc-DSG1-7	NA	NA	NA	inter
CUST_43379_PI429285431	8.056117	P	8.263487	P	0.866114700277592	0	lncRNA	48193-1_{1..1011}	"gi|338797753|ref|NR_038934.1| Homo sapiens calmodulin binding transcription activator 1 (CAMTA1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338797753|ref|NR_038934.1| Homo sapiens calmodulin binding transcription activator 1 (CAMTA1), transcript variant 4, non-coding RNA"	Chr1	  6845384	  6846394	+	23261	NR_038934.1	NA	NA	NA	NA	NA	inter
CUST_1591_PI429285431	4.4185553	P	4.8954663	P	0.718514412130114	0	lncRNA	1577-1_{1..2591}	"transcript_id ""ENST00000457449.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457449.1"" | genecode_v17"	chr3	184474177	184476767	-	ENSG00000229433.1	ENST00000457449.1	RP11-329B9.1	RP11-329B9.1-001	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
LNCA_19_P00802154	5.8275814	P	5.1550417	P	1.59387633670074	0	lncRNA	ENST00000370754	XR_132519	XR_132519	NA	NA	NA	0	ENST00000370754	THC2611597	NA	"PREDICTED: Homo sapiens hypothetical LOC100652827 (LOC100652827), miscRNA [XR_132519]"	chr6:56765299-56765240	hs|6p12.1	Agilent_HUMAN_G3V2	ENST00000370754	ENST00000370754	chr6	 56765240	 56765299	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4371_PI429285431	0.8998998	A	0.8940301	A	1.00407685385648	0	lncRNA	4325-1_{1..310}	"transcript_id ""ENST00000552470.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552470.1"" | genecode_v17"	chr12	 91011536	 91011845	-	ENSG00000257995.1	ENST00000552470.1	RP11-632B21.1	RP11-632B21.1-001	NA	NA	NA	inter
CUST_18685_PI429285431	0.8894171	A	0.889222	A	1.00013524215932	0	lncRNA	20385-1_{1..548}	lnc-RASA1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASA1-3:4	chr5	 87581558	 87582105	+	lnc-RASA1-3	lnc-RASA1-3:4	ENSG00000247828	CTC-358I24.1	NA	NA	NA	inter
LNCA_21_P0003409	0.9252289	A	1.3754897	A	0.731910526509092	0	lncRNA	ENST00000515860	NA	NA	NA	NA	XLOC_003709	NA	ENST00000515860	NA	NA	"BROAD Institute lincRNA (XLOC_003709), lincRNA [TCONS_00007640]"	chr4:139357878-139357937	hs|4q28.3	Agilent_HUMAN_G3V2	ENST00000515860	ENST00000515860	chr4	139357878	139357937	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34277_PI429285431	1.1068511	A	0.9075553	A	1.14813779578687	0	lncRNA	35776-1_{1..389}	n341133|AF272378|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3599|NULL|1.2425400|-0.0645754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341133|AF272378|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3599|NULL|1.2425400|-0.0645754	chr11	118352702	118353090	+	NA	NA	NA	NA	MLL	"hg19_refFlat_MLL:range=chr11:118307228-1183928875'pad=0,hg19_refFlat_MLL:range=chr11:118307228-1183928875'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50chr11:118342702-118365030"	NA	inner
CUST_49488_PI429285431	6.1860867	P	5.0968685	P	2.12758710775868	0	lncRNA	53280-1_{1..573}	hg19_lincRNAsTranscripts_TCONS_l2_00024608 range=chr6:10460125-10460788 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024608 range=chr6:10460125-10460788 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 10460125	 10460697	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19519_PI429285431	2.1757326	A	1.1205933	A	2.07791883119807	0	lncRNA	21175-1_{1..644}	lnc-GABPA-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GABPA-3:2	chr21	 27790262	 27790905	+	lnc-GABPA-3	lnc-GABPA-3:2	ENSG00000232692.1	AP001596.6	NA	NA	NA	inter
CUST_48174_PI429285431	4.8102994	P	5.0690494	P	0.835811781518529	0	lncRNA	52038-2_{3001..4357}	"gi|310113238|ref|XR_111785.1| PREDICTED: Homo sapiens uncharacterized LOC100132501 (LOC100132501), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310113238|ref|XR_111785.1| PREDICTED: Homo sapiens uncharacterized LOC100132501 (LOC100132501), misc_RNA"	NA	NA	NA	NA	NA	XR_111785.1	NA	NA	NA	NA	NA	Unknown
CUST_33304_PI429285431	2.9672348	A	3.6728678	P	0.613173392311266	0	lncRNA	34887-1_{1..2940}	n340021|AL110200|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2475|NULL|-0.0406070|-0.3112856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340021|AL110200|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2475|NULL|-0.0406070|-0.3112856	chr10	 45931683	 45934622	+	NA	NA	NA	NA	ALOX5	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-59.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80chr10:45921683-45941565"	NA	inner
CUST_24835_PI429285431	0.92425513	A	0.92778575	A	0.997555752750213	0	lncRNA	26375-1_{1..144}	lnc-C10orf31-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf31-3:2	chr10	 11140035	 11140178	-	lnc-C10orf31-3	lnc-C10orf31-3:2	ENSG00000237986.1	RP1-33E13.1	CELF2	NA	chr10:11130035-11150123	inter
CUST_20379_PI429285431	6.886866	P	7.5680037	P	0.623673255769788	0	lncRNA	22021-1_{1..453}	lnc-YIF1A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YIF1A-1:2	chr11	 66044771	 66045223	-	lnc-YIF1A-1	lnc-YIF1A-1:2	ENSG00000254452.1	RP11-867G23.4	KLC2	NA	chr11:66034771-66035332	inner
CUST_19256_PI429285431	1.1024117	A	0.89678466	A	1.15318744891717	0	lncRNA	20925-1_{1..449}	lnc-INTS8-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-INTS8-1:2	chr8	 95963350	 95963798	+	lnc-INTS8-1	lnc-INTS8-1:2	ENSG00000253878.1	RP11-347C18.3	TP53INP1	NA	chr8:95953350-95961615	inter
CUST_46752_PI429285431	6.9447412	P	6.9239354	P	1.01452597287725	0	lncRNA	50902-1_{1..2781}	"gi|325197165|ref|NR_037924.1| Homo sapiens FAM18B2-CDRT4 readthrough (FAM18B2-CDRT4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|325197165|ref|NR_037924.1| Homo sapiens FAM18B2-CDRT4 readthrough (FAM18B2-CDRT4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_037924.1	NA	NA	NA	NA	NA	Unknown
CUST_44993_PI429285431	1.07986	A	1.3745317	A	0.815257831546708	0	lncRNA	49502-1_{1..1848}	"gi|154240700|ref|NR_003680.1| Homo sapiens ribosomal protein L13a pseudogene 17 (RPL13AP17), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|154240700|ref|NR_003680.1| Homo sapiens ribosomal protein L13a pseudogene 17 (RPL13AP17), non-coding RNA"	Chr7	 77976559	 77978406	+	399670	NR_003680.1	NA	NA	NA	NA	NA	inter
CUST_23010_PI429285431	0.91126114	A	0.91672	A	0.996223356107958	0	lncRNA	24582-1_{1..607}	lnc-CHAD-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHAD-3:1	chr17	 48615952	 48616558	-	lnc-CHAD-3	lnc-CHAD-3:1	ENSG00000250286.1	RP11-94C24.8	SPATA20	"hg19_refFlat_EPN3:range=chr17:48613918-486195185'pad=0,hg19_refFlat_EPN3:range=chr17:48613918-486195185'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10chr17:48624562-48626115"	NA	inner
CUST_24506_PI429285431	5.09186	P	5.5124173	P	0.74713595672735	0	lncRNA	26057-1_{1..333}	lnc-MEPCE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MEPCE-1:1	chr7	100034006	100034338	+	lnc-MEPCE-1	lnc-MEPCE-1:1	ENSG00000241357.1	RP11-758P17.2	ZCWPW1	"hg19_refFlat_PPP1R35:range=chr7:100032983-1000339975'pad=0,hg19_refFlat_PPP1R35:range=chr7:100032983-1000339975'pad=0 3'pad=0 strand=- repeatMasking=none,-98.00chr7:100024006-100026302"	NA	inner
CUST_50078_PI429285431	0.9206797	A	0.9142277	A	1.00448220075533	0	lncRNA	53811-1_{1..2699}	hg19_lincRNAsTranscripts_TCONS_l2_00028289 range=chr8:90597926-90609646 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028289 range=chr8:90597926-90609646 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 90597926	 90600624	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11378_PI429285431	1.1293352	A	0.93784475	A	1.1419428492268	0	lncRNA	12943-1_{1..939}	lnc-CDC73-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDC73-1:2	chr1	193324892	193325830	+	lnc-CDC73-1	lnc-CDC73-1:2	XLOC_000508	linc-CFH-4	NA	NA	NA	inter
LNCA_21_P0006946	3.547181	P	4.1104126	P	0.676784484637914	0	lncRNA	THC2652142	NA	NA	NA	NA	XLOC_008688	NA	NA	THC2652142	NA	"BROAD Institute lincRNA (XLOC_008688), lincRNA [TCONS_00018401]"	chr10:002489269-002489210	hs|10p15.3	Agilent_HUMAN_G3V2	THC2652142	THC2652142	chr10	  2489210	  2489269	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003002	0.9215629	A	0.9071417	A	1.01004614115373	0	lncRNA	TCONS_00006134	NA	NA	NA	NA	XLOC_002735	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002735), lincRNA [TCONS_00006134]"	chr3:98623827-98623886	hs|3q12.1	Agilent_HUMAN_G3V2	TCONS_00006134	TCONS_00006134	chr3	 98623827	 98623886	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46251_PI429285431	1.0477457	A	0.90323794	A	1.10535344816024	0	lncRNA	50490-1_{1..570}	"gi|388890206|ref|NR_047004.1| Homo sapiens long intergenic non-protein coding RNA 379 (LINC00379), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|388890206|ref|NR_047004.1| Homo sapiens long intergenic non-protein coding RNA 379 (LINC00379), non-coding RNA"	Chr13	 91779867	 91780436	-	100874150	NR_047004.1	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20"	NA	inter
CUST_8245_PI429285431	3.0068398	A	3.2905219	P	0.821491697728406	0	lncRNA	9834-1_{1..814}	lnc-ZCCHC24-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZCCHC24-3:3	chr10	 80827145	 80827958	-	lnc-ZCCHC24-3	lnc-ZCCHC24-3:3	ENSG00000224596	RP11-202P11.1	ZMIZ1	NA	chr10:80828792-80837225	inter
CUST_28251_PI429285431	8.052941	P	8.178591	P	0.91659098406404	0	lncRNA	29886-2_{3001..3085}	n325543|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255327|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255327|-0.3793330|-0.3366590	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325543|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255327|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255327|-0.3793330|-0.3366590	chr17	 65105520	 65105604	+	NA	NA	NA	NA	HELZ	"hg19_refFlat_HELZ:range=chr17:65074368-652149205'pad=0,hg19_refFlat_HELZ:range=chr17:65074368-652149205'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr17:65092520-65146087"	NA	inner
CUST_14990_PI429285431	0.897483	A	1.9789689	A	0.472541879364532	0	lncRNA	16653-1_{1..817}	lnc-KCNA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNA1-1:1	chr12	  5090327	  5091143	+	lnc-KCNA1-1	lnc-KCNA1-1:1	XLOC_009626	linc-KCNA5	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-23.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.52;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30"	NA	inter
CUST_39683_PI429285431	3.7982512	P	3.831675	P	0.977098695863781	0	lncRNA	40623-1_{1..2043}	n405394|NR_002139_6|lncRNA|Homosapiens||RefGeneNoncode|NR_002139_6||-0.6652360|-0.2286429	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405394|NR_002139_6|lncRNA|Homosapiens||RefGeneNoncode|NR_002139_6||-0.6652360|-0.2286429	chr6	  1096479	  1098521	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38582_PI429285431	2.8905237	A	2.1049218	A	1.72381135263317	0	lncRNA	39593-1_{1..954}	n383603|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002rkn.1||3.9069000|-0.2672799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383603|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002rkn.1||3.9069000|-0.2672799	chr2	 27615489	 27616442	-	NA	NA	NA	NA	PPM1G	NA	chr2:27605489-27626443	inner
LNCA_33_P3543288	0.92265356	A	0.9090662	A	1.00946252957422	0	lncRNA	XR_109407	XR_109407	XR_109407	   440446	Hs.626751	FLJ42842	uncharacterized FLJ42842	NA	THC2486031	NA	"PREDICTED: Homo sapiens hypothetical FLJ42842 (FLJ42842), miscRNA [XR_109407]"	chr17:49419871-49419930	hs|17q21.33	Agilent_HUMAN_G3V2	XR_109407	XR_109407	chr17	 49419871	 49419930	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29838_PI429285431	0.90800333	A	0.9004895	A	1.00522177627792	0	lncRNA	31601-1_{1..311}	n333720|L01090|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191444|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191444|1.4256500|-0.2321455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333720|L01090|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191444|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191444|1.4256500|-0.2321455	chr1	152287086	152287396	-	NA	NA	NA	NA	FLG	NA	chr1:152277086-152297679	inner
CUST_48386_PI429285431	7.1130586	P	5.3287325	P	3.44457526095446	0	lncRNA	52239-1_{1..760}	hg19_lincRNAsTranscripts_TCONS_l2_00001442 range=chr1:111390708-111391552 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001442 range=chr1:111390708-111391552 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	111390708	111391467	-	NA	NA	NA	NA	CD53	NA	chr1:111396721-111401552	inter
CUST_43352_PI429285431	4.8440104	P	4.914126	P	0.95256166830166	0	lncRNA	48171-1_{1..2712}	"gi|383276548|ref|NR_047526.1| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|383276548|ref|NR_047526.1| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 9, non-coding RNA"	Chr1	   762971	   765682	+	643837	NR_047526.1	NA	NA	NA	NA	NA	inter
CUST_39155_PI429285431	1.0097723	A	0.916619	A	1.06669912168551	0	lncRNA	40132-1_{1..2710}	n385808|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004eos.1||1.0870300|-0.2859956	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385808|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004eos.1||1.0870300|-0.2859956	chrX	109763539	109766248	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2624_PI429285431	7.35827	P	7.461016	P	0.931258762241902	0	lncRNA	2611-1_{1..335}	"transcript_id ""ENST00000454262.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454262.1"" | genecode_v17"	chr6	131018457	131018791	+	ENSG00000229923.1	ENST00000454262.1	RP11-102N11.1	RP11-102N11.1-001	NA	NA	NA	inter
CUST_2417_PI429285431	3.06737	A	3.6415827	P	0.671652682190198	0	lncRNA	2409-1_{1..674}	"transcript_id ""ENST00000521805.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521805.1"" | genecode_v17"	chr5	163546104	163546777	-	ENSG00000253331.1	ENST00000521805.1	CTC-207P7.1	CTC-207P7.1-001	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80"	NA	inter
CUST_35498_PI429285431	0.905515	A	0.91455853	A	0.993751108719331	0	lncRNA	36906-1_{1..2205}	n342598|BC039368|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5099|NULL|-1.0178800|-0.2284562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342598|BC039368|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5099|NULL|-1.0178800|-0.2284562	chr10	 52497326	 52499530	-	NA	NA	NA	NA	ASAH2B	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_TVP23C:range=chr17:15406178-154667625'pad=0,hg19_refFlat_TVP23C:range=chr17:15406178-154667625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-59.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90chr10:52499708-52509508"	NA	inter
CUST_9911_PI429285431	2.1329362	A	2.36527	A	0.85125672754015	0	lncRNA	11435-1_{1..451}	lnc-ITSN1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITSN1-2:6	chr21	 35349029	 35349479	+	lnc-ITSN1-2	lnc-ITSN1-2:6	XLOC_013921	linc-SLC5A3-2	NA	NA	NA	inter
CUST_30794_PI429285431	2.604847	A	1.6733341	A	1.90727503530383	0	lncRNA	32581-1_{1..230}	n336683|Z69291|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327669|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327669|0.1901780|-0.1396567	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336683|Z69291|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327669|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327669|0.1901780|-0.1396567	chr17	 32612773	 32613002	+	NA	NA	NA	NA	CCL11	NA	chr17:32612687-32615199	inner
CUST_40055_PI429285431	7.7147417	P	6.0451617	P	3.18121967775021	0	lncRNA	40906-3_{6001..7259}	n407257|NR_026718|lncRNA|Homosapiens||RefGeneNoncode|NR_026718||6.9737300|-0.2577804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n407257|NR_026718|lncRNA|Homosapiens||RefGeneNoncode|NR_026718||6.9737300|-0.2577804	chr17	 18575235	 18576493	-	NA	NA	NA	NA	ZNF286B	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-20.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30chr17:18561742-18585572"	NA	inner
CUST_44898_PI429285431	0.97894704	A	0.98612183	A	0.995039160352714	0	lncRNA	49419-1_{1..3000}	"gi|337298381|ref|NR_038965.1| Homo sapiens uncharacterized LOC100506497 (LOC100506497), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|337298381|ref|NR_038965.1| Homo sapiens uncharacterized LOC100506497 (LOC100506497), non-coding RNA"	Chr7	 29019583	 29022582	+	100506497	NR_038965.1	NA	NA	NA	NA	NA	inter
CUST_7928_PI429285431	1.1071935	A	0.91499245	A	1.14250545216232	0	lncRNA	9540-1_{1..2434}	lnc-HNRNPU-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HNRNPU-3:1	chr1	245385542	245387975	-	lnc-HNRNPU-3	lnc-HNRNPU-3:1	ENSG00000250146	ENST00000509125	KIF26B	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70chr1:245375542-245397587"	NA	inner
CUST_45806_PI429285431	2.6405356	A	2.634344	A	1.00430091257368	0	lncRNA	50145-2_{3001..3544}	"gi|197209880|ref|NR_024091.1| Homo sapiens ZFP91-CNTF readthrough (non-protein coding) (ZFP91-CNTF), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|197209880|ref|NR_024091.1| Homo sapiens ZFP91-CNTF readthrough (non-protein coding) (ZFP91-CNTF), non-coding RNA"	Chr11	 58349587	 58350130	+	386607	NR_024091.1	NA	NA	NA	NA	NA	inter
CUST_35369_PI429285431	0.9064051	A	0.9161551	A	0.993264600164155	0	lncRNA	36777-1_{1..3000}	n342415|BC050395|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4907|NULL|2.0683000|-0.2522056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342415|BC050395|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4907|NULL|2.0683000|-0.2522056	chr2	 61404583	 61407582	+	NA	NA	NA	NA	USP34	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_USP34:range=chr2:61415237-616978275'pad=0,hg19_refFlat_USP34:range=chr2:61415237-616978275'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80chr2:61414590-61426060"	NA	inner
CUST_6399_PI429285431	7.178875	P	7.710914	P	0.691576619041827	0	lncRNA	6332-1_{1..538}	"transcript_id ""ENST00000599269.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599269.1"" | genecode_v17"	chr19	 23252051	 23252588	-	ENSG00000269543.1	ENST00000599269.1	CTD-2291D10.3	CTD-2291D10.3-002	ZNF730	NA	chr19:23248781-23264278	inter
CUST_3523_PI429285431	6.574644	P	6.6935887	P	0.920860994087309	0	lncRNA	3492-1_{1..173}	"transcript_id ""ENST00000448674.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448674.1"" | genecode_v17"	chr9	117159004	117159176	-	ENSG00000235119.1	ENST00000448674.1	RP11-9M16.2	RP11-9M16.2-001	DFNB31	NA	chr9:117164360-117170783	inter
CUST_21571_PI429285431	0.9262398	A	0.91645586	A	1.00680475829579	0	lncRNA	23185-1_{1..450}	lnc-RPL27A-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPL27A-2:3	chr11	  8831624	  8832073	+	lnc-RPL27A-2	lnc-RPL27A-2:3	ENSG00000255159.1	RP11-318C2.1	ST5	NA	chr11:8821624-8841778	inner
CUST_29031_PI429285431	0.9995768	A	1.0029742	A	0.997647872366354	0	lncRNA	30760-1_{1..602}	n326521|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030083|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030083|-1.3191900|-0.3817212	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326521|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030083|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030083|-1.3191900|-0.3817212	chr1	 95589394	 95589995	-	NA	NA	NA	NA	TMEM56-RWDD3	NA	chr1:95583479-95600398	inner
CUST_37490_PI429285431	5.9246984	P	6.2065477	P	0.822535984096834	0	lncRNA	38591-1_{1..2406}	n345951|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1500|NULL|-1.3035500|-0.2509395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345951|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1500|NULL|-1.3035500|-0.2509395	chr18	 56073044	 56075449	-	NA	NA	NA	NA	NEDD4L	NA	chr18:56063044-56068772	inter
CUST_18909_PI429285431	0.9181955	A	0.9122842	A	1.00410580675238	0	lncRNA	20600-1_{1..675}	lnc-C1GALT1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1GALT1-1:2	chr7	  7317216	  7317890	+	lnc-C1GALT1-1	lnc-C1GALT1-1:2	ENSG00000230825	AC005532.5	NA	"hg19_refFlat_HHLA3:range=chr1:70820635-708322145'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708322145'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_HHLA3:range=chr1:70820635-708322015'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708322015'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70"	NA	inter
CUST_32126_PI429285431	0.927139	A	0.9020656	A	1.01753145973697	0	lncRNA	33827-1_{1..3000}	n338692|CR627155|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1110|NULL|-0.3256380|-0.2326804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338692|CR627155|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1110|NULL|-0.3256380|-0.2326804	chr2	 20812056	 20815055	-	NA	NA	NA	NA	HS1BP3	NA	chr2:20802056-20826027	inter
CUST_39458_PI429285431	0.96977526	A	0.9259654	A	1.03083245127368	0	lncRNA	40402-1_{1..2129}	n386976|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vux.1||0.1735990|-0.2422384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386976|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vux.1||0.1735990|-0.2422384	chr17	  8261730	  8263858	-	NA	NA	NA	NA	KRBA2	"hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-26.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-26.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70chr17:8271973-8273859"	NA	inter
CUST_51575_PI429285431	0.91571194	A	0.92531717	A	0.993364276205883	0	lncRNA	55140-1_{1..2170}	hg19_lincRNAsTranscripts_TCONS_l2_00010606 range=chr17:19532258-19537652 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010606 range=chr17:19532258-19537652 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 19532258	 19534427	+	NA	NA	NA	NA	ALDH3A2	NA	chr17:19522258-19547652	inter
CUST_28424_PI429285431	1.1763136	A	0.9041321	A	1.20763250960323	0	lncRNA	30083-2_{3001..3208}	n325746|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044729|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044729|-1.2228700|-0.3614361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325746|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044729|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044729|-1.2228700|-0.3614361	chr13	 43500454	 43500661	+	NA	NA	NA	NA	EPSTI1	"hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_EPSTI1:range=chr13:43462386-435663015'pad=0,hg19_refFlat_EPSTI1:range=chr13:43462386-435663015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_EPSTI1:range=chr13:43462630-435663015'pad=0,hg19_refFlat_EPSTI1:range=chr13:43462630-435663015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90chr13:43487454-43512073"	NA	inner
CUST_10678_PI429285431	6.2246714	P	6.408679	P	0.880254376442559	0	lncRNA	12211-1_{1..396}	lnc-FAM53A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM53A-1:2	chr4	  1581885	  1582280	-	lnc-FAM53A-1	lnc-FAM53A-1:2	XLOC_003853	linc-CTBP1-4	NA	NA	NA	inter
CUST_34890_PI429285431	4.2772784	P	4.5199056	P	0.845204761560093	0	lncRNA	36315-1_{1..1139}	n341805|BC015688|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4283|NULL|4.6114000|-0.1108077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341805|BC015688|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4283|NULL|4.6114000|-0.1108077	chr9	138395118	138396256	-	NA	NA	NA	NA	MRPS2	"hg19_refFlat_MRPS2:range=chr9:138392557-1383959795'pad=0,hg19_refFlat_MRPS2:range=chr9:138392557-1383959795'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_RALGDS:range=chr9:135973974-1360064705'pad=0,hg19_refFlat_RALGDS:range=chr9:135973974-1360064705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RALGDS:range=chr9:135973974-1360047055'pad=0,hg19_refFlat_RALGDS:range=chr9:135973974-1360047055'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RALGDS:range=chr9:135973974-1360243675'pad=0,hg19_refFlat_RALGDS:range=chr9:135973974-1360243675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RALGDS:range=chr9:135973974-1359965415'pad=0,hg19_refFlat_RALGDS:range=chr9:135973974-1359965415'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90chr9:138392483-138396519"	NA	inter
CUST_35004_PI429285431	1.9732624	A	2.7734625	A	0.574269521509279	0	lncRNA	36418-1_{1..2217}	n341934|BC073932|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4415|NULL|-0.5288340|-0.1321690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341934|BC073932|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4415|NULL|-0.5288340|-0.1321690	chr12	 58006121	 58008337	-	NA	NA	NA	NA	DTX3	"hg19_refFlat_ARHGEF25:range=chr12:58005678-580106775'pad=0,hg19_refFlat_ARHGEF25:range=chr12:58005678-580106775'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.00;hg19_refFlat_ARHGEF25:range=chr12:58004000-580106775'pad=0,hg19_refFlat_ARHGEF25:range=chr12:58004000-580106775'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.00chr12:57998604-58003583"	NA	inter
CUST_38233_PI429285431	1.0137366	A	0.97000533	A	1.03077629878579	0	lncRNA	39295-1_{1..648}	n381691|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001nhg.1||1.3670500|-0.3582192	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381691|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001nhg.1||1.3670500|-0.3582192	chr11	 50368317	 50368964	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013085	11.106634	P	11.82012	P	0.609844782404233	0	lncRNA	TCONS_l2_00024809	NA	NA	NA	NA	XLOC_l2_013031	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013031), lincRNA [TCONS_l2_00024809]"	chr6:69339910-69339851	hs|6q12	Agilent_HUMAN_G3V2	TCONS_l2_00024809	TCONS_l2_00024809	chr6	 69339851	 69339910	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37593_PI429285431	1.3165722	A	0.9294631	A	1.30777024146605	0	lncRNA	38694-1_{1..3000}	n346071|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1621|NULL|-1.6550800|-0.2841589	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346071|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1621|NULL|-1.6550800|-0.2841589	chr19	 12203086	 12206085	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80"	NA	inter
CUST_28686_PI429285431	0.9954051	A	0.9289018	A	1.0471755369391	0	lncRNA	30384-1_{1..430}	n326072|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046731|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046731|-1.2712500|-0.3350499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326072|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046731|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046731|-1.2712500|-0.3350499	chr10	  8482828	  8483257	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28670_PI429285431	0.9182514	A	0.90807927	A	1.00707569852489	0	lncRNA	30362-1_{1..823}	n326049|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047095|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047095|-0.2675000|-0.5976555	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326049|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047095|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047095|-0.2675000|-0.5976555	chr10	 20050631	 20051453	-	NA	NA	NA	NA	PLXDC2	NA	chr10:20040631-20067485	inter
CUST_38030_PI429285431	2.7264185	A	2.8910255	A	0.892171519947322	0	lncRNA	39114-1_{1..1179}	n377603|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029976||-0.3116430|-0.3168570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377603|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029976||-0.3116430|-0.3168570	chr6	  2818785	  2819963	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24347_PI429285431	4.7444334	P	4.746181	P	0.998789389368257	0	lncRNA	25899-2_{3001..3219}	lnc-TBC1D29-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBC1D29-1:1	chr17	 28906482	 28906700	+	lnc-TBC1D29-1	lnc-TBC1D29-1:1	ENSG00000214719.5	LRRC37BP1	NA	"hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.92"	NA	inter
CUST_43602_PI429285431	1.7307777	A	1.6067252	A	1.0897917692616	0	lncRNA	48365-1_{1..1123}	"gi|374088104|ref|NR_046139.1| Homo sapiens family with sequence similarity 91, member A2 (FAM91A2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374088104|ref|NR_046139.1| Homo sapiens family with sequence similarity 91, member A2 (FAM91A2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NR_046139.1	NA	NA	NA	NA	NA	Unknown
CUST_44182_PI429285431	3.663519	P	3.8477569	P	0.880113871070651	0	lncRNA	48838-1_{1..3000}	"gi|388240819|ref|NR_049756.1| Homo sapiens ribonuclease P/MRP 14kDa subunit (RPP14), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|388240819|ref|NR_049756.1| Homo sapiens ribonuclease P/MRP 14kDa subunit (RPP14), transcript variant 4, non-coding RNA"	Chr3	 58291972	 58294971	+	11102	NR_049756.1	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60"	NA	inter
CUST_4186_PI429285431	1.5009148	A	0.9577232	A	1.45719262642866	0	lncRNA	4145-1_{1..1920}	"transcript_id ""ENST00000540895.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000540895.1"" | genecode_v17"	chr12	 23117506	 23119425	+	ENSG00000256995.2	ENST00000540895.1	RP11-114G22.1	RP11-114G22.1-004	NA	NA	NA	inter
LNCA_21_P0009239	1.2894336	A	0.968034	A	1.2495421779345	0	lncRNA	TCONS_00025354	NA	NA	NA	NA	XLOC_012175	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012175), lincRNA [TCONS_00025354]"	chr17:32803070-32803129	hs|17q12	Agilent_HUMAN_G3V2	TCONS_00025354	TCONS_00025354	chr17	 32803070	 32803129	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20689_PI429285431	1.6940838	A	1.1802275	A	1.42786175007541	0	lncRNA	22325-1_{1..582}	lnc-AMIGO1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AMIGO1-1:1	chr1	110086026	110086607	-	lnc-AMIGO1-1	lnc-AMIGO1-1:1	ENSG00000254942.1	RP5-1160K1.8	GNAI3	"hg19_refFlat_GPR61:range=chr1:110085645-1100870005'pad=0,hg19_refFlat_GPR61:range=chr1:110085645-1100870005'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.80chr1:110091186-110096459"	NA	inner
CUST_48018_PI429285431	1.7528106	A	1.7546034	A	0.998758097534625	0	lncRNA	51901-1_{1..1214}	"gi|410173546|ref|XR_172268.1| PREDICTED: Homo sapiens uncharacterized LOC100507535 (LOC100507535), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">gi|410173546|ref|XR_172268.1| PREDICTED: Homo sapiens uncharacterized LOC100507535 (LOC100507535), misc_RNA"	NA	NA	NA	NA	NA	XR_172268.1	NA	NA	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50"	NA	Unknown
CUST_22841_PI429285431	7.0435166	P	6.9148045	P	1.0933172565217	0	lncRNA	24420-1_{1..677}	lnc-YSK4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YSK4-1:1	chr2	135676133	135676809	-	lnc-YSK4-1	lnc-YSK4-1:1	ENSG00000224043.3	AC016725.4	CCNT2	"hg19_refFlat_ACMSD:range=chr2:135596253-1356594305'pad=0,hg19_refFlat_ACMSD:range=chr2:135596253-1356594305'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40chr2:135676392-135686280"	NA	inter
CUST_6185_PI429285431	0.9164869	A	0.9221993	A	0.996048294664368	0	lncRNA	6109-1_{1..568}	"transcript_id ""ENST00000578610.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578610.1"" | genecode_v17"	chr18	 51094817	 51095384	+	ENSG00000263438.1	ENST00000578610.1	RP11-202D1.3	RP11-202D1.3-001	NA	NA	NA	inter
CUST_36688_PI429285431	0.91804093	A	0.9092191	A	1.00613356030902	0	lncRNA	37871-1_{1..848}	n345178|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_727|NULL|-1.2672200|-0.3763884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345178|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_727|NULL|-1.2672200|-0.3763884	chr12	 50691303	 50692150	+	NA	NA	NA	NA	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.30"	NA	inter
CUST_51707_PI429285431	11.414847	P	11.60222	P	0.878203384757464	0	lncRNA	55264-1_{1..1229}	hg19_lincRNAsTranscripts_TCONS_l2_00011960 range=chr18:11619234-11633347 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011960 range=chr18:11619234-11633347 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 11619234	 11620462	-	NA	NA	NA	NA	AMAC1L1	NA	chr18:11609595-11610611	inter
CUST_49054_PI429285431	0.9106195	A	0.9051781	A	1.00377881284596	0	lncRNA	52882-1_{1..2494}	hg19_lincRNAsTranscripts_TCONS_l2_00020936 range=chr4:185973063-186017778 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020936 range=chr4:185973063-186017778 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	185973063	185975556	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36024_PI429285431	0.9297086	A	0.9276497	A	1.00142813955145	0	lncRNA	37355-1_{1..3000}	n344635|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_183|NULL|-1.3953800|-0.2248374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344635|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_183|NULL|-1.3953800|-0.2248374	chr6	  3898391	  3901390	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10"	NA	inter
CUST_5187_PI429285431	4.1144543	P	3.7375748	P	1.29853013946343	0	lncRNA	5128-1_{1..874}	"transcript_id ""ENST00000559825.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559825.1"" | genecode_v17"	chr15	 52408771	 52409644	+	ENSG00000259327.1	ENST00000559825.1	CTD-2184D3.6	CTD-2184D3.6-001	GNB5	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50chr15:52413123-52424328"	NA	inner
LNCA_21_P0006934	1.6093563	A	0.91637146	A	1.61662474984915	0	lncRNA	TCONS_00018381	NA	NA	NA	NA	XLOC_008659	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008659), lincRNA [TCONS_00018381]"	chr10:126951924-126951983	hs|10q26.13	Agilent_HUMAN_G3V2	TCONS_00018381	TCONS_00018381	chr10	126951924	126951983	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6533_PI429285431	0.9070606	A	0.92594075	A	0.986998536090193	0	lncRNA	6476-1_{1..566}	"transcript_id ""ENST00000592583.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592583.1"" | genecode_v17"	chr19	 44527756	 44528321	-	ENSG00000267144.1	ENST00000592583.1	AC067968.3	AC067968.3-001	ZNF230	NA	chr19:44517756-44518072	inter
CUST_36219_PI429285431	3.8515954	P	4.262664	P	0.752066114178167	0	lncRNA	37472-1_{1..1955}	n344762|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_311|NULL|-1.4864800|-0.2672935	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344762|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_311|NULL|-1.4864800|-0.2672935	chr2	114588428	114590382	-	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40"	NA	inter
CUST_26152_PI429285431	0.9220112	A	0.91121304	A	1.00751279464668	0	lncRNA	27663-1_{1..2844}	lnc-SMCR5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SMCR5-1:1	chr17	 17680000	 17682843	-	lnc-SMCR5-1	lnc-SMCR5-1:1	ENSG00000226746.2	SMCR5	RAI1	"hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30chr17:17670000-17692843"	NA	inner
CUST_21245_PI429285431	2.4299407	A	2.617495	A	0.878093029994139	0	lncRNA	22871-1_{1..558}	lnc-AC005323.1.1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC005323.1.1-1:7	chr17	 10526069	 10526626	+	lnc-AC005323.1.1-1	lnc-AC005323.1.1-1:7	ENSG00000214970.2	CTC-297N7.7	MYH3	NA	chr17:10531843-10536228	inter
LNCA_21_P0003550	0.92354316	A	0.9209382	A	1.00180725179407	0	lncRNA	ENST00000503037	NA	NA	NA	NA	XLOC_004215	NA	ENST00000503037	NA	NA	"BROAD Institute lincRNA (XLOC_004215), lincRNA [TCONS_00007929]"	chr4:187900721-187900662	hs|4q35.2	Agilent_HUMAN_G3V2	ENST00000503037	ENST00000503037	chr4	187900662	187900721	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2135_PI429285431	2.2005634	A	1.0978862	A	2.1475283844928	0	lncRNA	2126-1_{1..2913}	"transcript_id ""ENST00000514532.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514532.2"" | genecode_v17"	chr5	 37870009	 37872921	+	ENSG00000248587.2	ENST00000514532.2	GDNF-AS1	GDNF-AS1-003	NA	NA	NA	inter
CUST_22106_PI429285431	0.9218893	A	0.9195381	A	1.00163105637876	0	lncRNA	23711-1_{1..458}	lnc-STT3B-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STT3B-1:4	chr3	 31762884	 31763341	+	lnc-STT3B-1	lnc-STT3B-1:4	ENSG00000232490.2	OSBPL10-AS1	OSBPL10	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90chr3:31752884-31773068"	NA	inner
CUST_32274_PI429285431	0.92004293	A	0.928557	A	0.994115876051343	0	lncRNA	33961-2_{3001..3489}	n338851|BC040311|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1274|NULL|-1.2204700|-0.4613224	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n338851|BC040311|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1274|NULL|-1.2204700|-0.4613224	chr2	 56304788	 56305276	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49358_PI429285431	3.0889587	A	2.641387	A	1.36374291368468	0	lncRNA	53171-1_{1..1750}	hg19_lincRNAsTranscripts_TCONS_l2_00023027 range=chr5:95170548-95188626 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023027 range=chr5:95170548-95188626 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 95170548	 95172297	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00"	NA	inter
LNCA_19_P00321356	4.751469	P	4.976454	P	0.855603921528044	0	lncRNA	ENST00000430555	NA	NA	NA	NA	XLOC_l2_007834	NA	ENST00000430555	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007834), lincRNA [TCONS_l2_00014338]"	chr2:242908343-242908402	hs|2q37.3	Agilent_HUMAN_G3V2	ENST00000430555	ENST00000430555	chr2	242908343	242908402	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35038_PI429285431	1.638636	A	1.2446902	A	1.31398226177806	0	lncRNA	36449-1_{1..2245}	n341979|BC033323|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4460|NULL|-0.8101100|-0.3238421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341979|BC033323|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4460|NULL|-0.8101100|-0.3238421	chr12	 88448974	 88451218	+	NA	NA	NA	NA	TMTC3	"hg19_refFlat_CEP290:range=chr12:88442961-885350845'pad=0,hg19_refFlat_CEP290:range=chr12:88442961-885350845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50chr12:88451577-88462835"	NA	inner
CUST_13515_PI429285431	0.92729706	A	0.9535438	A	0.981971637105029	0	lncRNA	15155-1_{1..1654}	lnc-FSIP1-5:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FSIP1-5:7	chr15	 39160530	 39162183	-	lnc-FSIP1-5	lnc-FSIP1-5:7	XLOC_011434	linc-RASGRP1-2	NA	NA	NA	inter
CUST_19330_PI429285431	4.306204	P	3.5449712	P	1.69493835098344	0	lncRNA	20996-1_{1..1106}	lnc-METTL20-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-METTL20-1:2	chr12	 31768094	 31769199	+	lnc-METTL20-1	lnc-METTL20-1:2	ENSG00000255867.1	DENND5B-AS1	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30"	NA	inter
CUST_2707_PI429285431	0.9156074	A	0.9057889	A	1.00682887676034	0	lncRNA	2692-1_{1..1122}	"transcript_id ""ENST00000435810.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435810.1"" | genecode_v17"	chr6	166167677	166168798	+	ENSG00000236627.1	ENST00000435810.1	RP11-252P19.1	RP11-252P19.1-001	NA	NA	NA	inter
CUST_34755_PI429285431	1.1615295	A	1.3534471	A	0.875441329384767	0	lncRNA	36198-1_{1..3000}	n341664|CR627240|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4135|NULL|-0.9469710|-0.2923848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n341664|CR627240|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4135|NULL|-0.9469710|-0.2923848	chr9	 23500688	 23503687	-	NA	NA	NA	NA	ELAVL2	NA	chr9:23681883-23682385	inter
CUST_34101_PI429285431	1.0515095	A	0.9039527	A	1.1076920094706	0	lncRNA	35625-1_{1..1655}	n340924|AK093594|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3389|NULL|-0.9831080|-0.2024973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340924|AK093594|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3389|NULL|-0.9831080|-0.2024973	chr17	 80420476	 80422130	+	NA	NA	NA	NA	NARF	NA	chr17:80416060-80432131	inner
CUST_29221_PI429285431	4.6844316	P	4.860633	P	0.885030205878306	0	lncRNA	30970-1_{1..417}	n326744|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006887|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006887|-1.1375200|-0.2772114	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326744|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006887|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006887|-1.1375200|-0.2772114	chr1	   730041	   730457	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37230_PI429285431	0.9111607	A	0.91078156	A	1.00026283435694	0	lncRNA	38340-1_{1..2243}	n345663|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1212|NULL|-1.3130900|-0.3784951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345663|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1212|NULL|-1.3130900|-0.3784951	chr5	131686111	131688353	+	NA	NA	NA	NA	SLC22A5	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30chr5:131705401-131711412"	NA	inter
LNCA_21_P0011868	0.96687526	A	0.92504793	A	1.02941686955769	0	lncRNA	ENST00000427045	NA	BC035629	NA	Hs.549598	XLOC_l2_007706	NA	ENST00000427045	THC2606200	NA	"BROAD Institute lincRNA (XLOC_l2_007706), lincRNA [TCONS_l2_00014184]"	chr2:200494686-200494745	hs|2q33.1	Agilent_HUMAN_G3V2	ENST00000427045	ENST00000427045	chr2	200494686	200494745	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47194_PI429285431	1.3900571	A	0.9060999	A	1.39857459103112	0	lncRNA	51269-1_{1..1691}	"gi|311771648|ref|NR_037159.1| Homo sapiens ZNF582 antisense RNA 1 (head to head) (ZNF582-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|311771648|ref|NR_037159.1| Homo sapiens ZNF582 antisense RNA 1 (head to head) (ZNF582-AS1), transcript variant 1, non-coding RNA"	Chr19	 56905045	 56906735	+	386758	NR_037159.1	NA	NA	NA	NA	NA	inter
CUST_8252_PI429285431	0.93007094	A	1.3217566	A	0.762238476558546	0	lncRNA	9842-1_{1..772}	lnc-JUN-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JUN-5:1	chr1	 59663855	 59664626	-	lnc-JUN-5	lnc-JUN-5:1	ENSG00000224609	XLOC_000851	NA	NA	NA	inter
CUST_51127_PI429285431	1.0814642	A	0.91033626	A	1.12593843133733	0	lncRNA	54758-1_{1..1045}	hg19_lincRNAsTranscripts_TCONS_l2_00007343 range=chr13:114581537-114586518 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007343 range=chr13:114581537-114586518 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	114581537	114582581	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19285_PI429285431	0.9197888	A	0.9088102	A	1.00763881364079	0	lncRNA	20953-1_{1..381}	lnc-TMOD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TMOD3-1:1	chr15	 52327757	 52328137	+	lnc-TMOD3-1	lnc-TMOD3-1:1	ENSG00000259398.1	RP11-430B1.1	MAPK6	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70chr15:52317757-52337822"	NA	inner
CUST_19271_PI429285431	0.9154561	A	1.2748399	A	0.7794974454076	0	lncRNA	20939-1_{1..2329}	lnc-NAV1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NAV1-2:1	chr1	201499222	201501550	+	lnc-NAV1-2	lnc-NAV1-2:1	ENSG00000223396.2	RPS10P7	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-24.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.32;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.34;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20"	NA	inter
CUST_11389_PI429285431	4.7955575	P	5.0688677	P	0.827418890094014	0	lncRNA	12953-1_{1..387}	lnc-IRF4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRF4-2:1	chr6	   713714	   714100	+	lnc-IRF4-2	lnc-IRF4-2:1	XLOC_005121	linc-FOXQ1-2	NA	NA	NA	inter
LNCA_21_P0010262	0.962112	A	1.1947454	A	0.851079968052624	0	lncRNA	ENST00000417820	NA	NA	NA	NA	XLOC_013973	NA	ENST00000417820	THC2699704	NA	"BROAD Institute lincRNA (XLOC_013973), lincRNA [TCONS_00029055]"	chr21:46223868-46223927	hs|21q22.3	Agilent_HUMAN_G3V2	ENST00000417820	ENST00000417820	chr21	 46223868	 46223927	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41406_PI429285431	0.9063419	A	0.9069211	A	0.999598609731656	0	lncRNA	42524-1_{1..75}	ENST00000585261 ncrna:miRNA chromosome:GRCh37:22:46156404:46156478:1 gene:ENSG00000264160 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585261 ncrna:miRNA chromosome:GRCh37:22:46156404:46156478:1 gene:ENSG00000264160 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 46156404	 46156478	+	ENSG00000264160	ENST00000585261	NA	NA	ATXN10	NA	chr22:46146404-46166478	inner
CUST_27706_PI429285431	2.6656623	A	3.0980287	P	0.741045278378181	0	lncRNA	29285-1_{1..1234}	n324917|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080109|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080109|-0.6386030|-0.1658491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324917|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080109|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080109|-0.6386030|-0.1658491	chr20	 61139807	 61141040	+	NA	NA	NA	NA	C20orf166	NA	chr20:61147660-61165660	inner
LNCA_33_P3259443	0.95193255	A	1.2370799	A	0.820657786452402	0	lncRNA	ENST00000338857	XR_109175	XR_109175	NA	Hs.635230	NA	NA	ENST00000338857	NA	NA	"PREDICTED: Homo sapiens golgin-like (LOC441728), miscRNA [XR_109175]"	chr15:76079262-76079321	hs|15q24.2	Agilent_HUMAN_G3V2	ENST00000338857	ENST00000338857	chr15	 76079262	 76079321	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25986_PI429285431	7.179695	P	7.3072705	P	0.915368467419761	0	lncRNA	27505-2_{3001..5876}	lnc-NDUFS8-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFS8-1:6	chr11	 67798217	 67801092	+	lnc-NDUFS8-1	lnc-NDUFS8-1:6	ENSG00000006534.11	ALDH3B1	ALDH3B1	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.61;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr11:67785217-67796743"	NA	inner
CUST_8804_PI429285431	0.9067986	A	0.90001994	A	1.00470966483936	0	lncRNA	10345-1_{1..506}	lnc-LGALSL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LGALSL-2:1	chr2	 64456631	 64457136	+	lnc-LGALSL-2	lnc-LGALSL-2:1	ENSG00000225889	AC074289.1	NA	NA	NA	inter
LNCA_21_P0010060	0.9432971	A	1.8933657	A	0.517607849135827	0	lncRNA	TCONS_00028445	NA	NA	NA	NA	XLOC_013805	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013805), lincRNA [TCONS_00028445]"	chr20:54242659-54242600	hs|20q13.2	Agilent_HUMAN_G3V2	TCONS_00028445	TCONS_00028445	chr20	 54242600	 54242659	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51145_PI429285431	0.9217882	A	0.91301715	A	1.00609814702929	0	lncRNA	54769-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00007752 range=chr14:60395000-60532322 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007752 range=chr14:60395000-60532322 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 60398000	 60400999	+	NA	NA	NA	NA	NA	"hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-27.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-28.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.21;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50"	NA	inter
CUST_21980_PI429285431	0.9202584	A	0.91458994	A	1.00393680600964	0	lncRNA	23588-1_{1..337}	lnc-TDRD3-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-TDRD3-4:3	chr13	 60618330	 60618666	+	lnc-TDRD3-4	lnc-TDRD3-4:3	ENSG00000227528.1	DIAPH3-AS1	DIAPH3	"hg19_refFlat_DIAPH3:range=chr13:60240718-607379005'pad=0,hg19_refFlat_DIAPH3:range=chr13:60240718-607379005'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_DIAPH3:range=chr13:60348303-607379005'pad=0,hg19_refFlat_DIAPH3:range=chr13:60348303-607379005'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00chr13:60608330-60628491"	NA	inner
CUST_29022_PI429285431	7.3916736	P	7.887614	P	0.709099311241871	0	lncRNA	30749-1_{1..1994}	n326509|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029470|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029470|-1.1062500|-0.2980902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326509|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029470|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029470|-1.1062500|-0.2980902	chr1	 96492212	 96494205	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3272_PI429285431	0.9183891	A	0.92303574	A	0.996784375814613	0	lncRNA	3250-1_{1..866}	"transcript_id ""ENST00000521523.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521523.1"" | genecode_v17"	chr8	115294296	115295161	+	ENSG00000254339.1	ENST00000521523.1	RP11-267L5.1	RP11-267L5.1-005	NA	NA	NA	inter
CUST_28884_PI429285431	0.90096426	A	1.1152062	A	0.861998975642694	0	lncRNA	30599-1_{1..616}	n326306|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086351|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086351|-1.0677900|-0.4918777	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326306|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086351|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086351|-1.0677900|-0.4918777	chr1	183794133	183794748	+	NA	NA	NA	NA	RGL1	NA	chr1:183784133-183811386	inner
CUST_48500_PI429285431	1.1127585	A	1.0145795	A	1.07042150096435	0	lncRNA	52353-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00001907 range=chr1:247348512-247374139 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001907 range=chr1:247348512-247374139 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	247348512	247351511	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10"	NA	inter
CUST_43122_PI429285431	0.90787673	A	0.8967106	A	1.00776980098263	0	lncRNA	47937-1_{1..655}	ENST00000586356 havana:3prime_overlapping_ncrna chromosome:GRCh37:19:11411453:11435117:-1 gene:ENSG00000267174 gene_biotype:3prime_overlapping_ncrna transcript_biotype:3prime_overlapping_ncrna	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000586356 havana:3prime_overlapping_ncrna chromosome:GRCh37:19:11411453:11435117:-1 gene:ENSG00000267174 gene_biotype:3prime_overlapping_ncrna transcript_biotype:3prime_overlapping_ncrna	chr19	 11411453	 11412107	-	ENSG00000267174	ENST00000586356	NA	NA	TSPAN16	"hg19_refFlat_TSPAN16:range=chr19:11406974-114375205'pad=0,hg19_refFlat_TSPAN16:range=chr19:11406974-114375205'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30chr19:11406824-11437672"	NA	inner
LNCA_21_P0004336	8.373396	P	8.4026785	P	0.979907516866833	0	lncRNA	TCONS_00010174	NA	NA	NA	NA	XLOC_004636	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004636), lincRNA [TCONS_00010174]"	chr5:172247743-172247802	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00010174	TCONS_00010174	chr5	172247743	172247802	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13747_PI429285431	1.1929014	A	1.1775858	A	1.01067251424585	0	lncRNA	15391-1_{1..2229}	lnc-ACP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACP1-3:1	chr2	   199744	   201972	+	lnc-ACP1-3	lnc-ACP1-3:1	XLOC_001300	linc-ACP1	NA	NA	NA	inter
CUST_40082_PI429285431	4.0183663	P	4.048587	P	0.979270479696987	0	lncRNA	40929-1_{1..2963}	n407409|NR_026864|lncRNA|Homosapiens||RefGeneNoncode|NR_026864||1.9299300|-0.1521183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407409|NR_026864|lncRNA|Homosapiens||RefGeneNoncode|NR_026864||1.9299300|-0.1521183	chr16	  2889573	  2892535	-	NA	NA	NA	NA	PRSS22	NA	chr16:2902728-2902752	inter
CUST_685_PI429285431	4.697178	P	4.6436296	P	1.03781435757662	0	lncRNA	678-1_{1..773}	"transcript_id ""ENST00000591575.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591575.1"" | genecode_v17"	chr2	  6758204	  6758976	-	ENSG00000236172.2	ENST00000591575.1	AC097517.2	AC097517.2-030	NA	NA	NA	inter
CUST_2843_PI429285431	1.8441452	A	2.4402785	A	0.661524594560335	0	lncRNA	2826-1_{1..419}	"transcript_id ""ENST00000450891.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450891.1"" | genecode_v17"	chr7	 62505205	 62505623	-	ENSG00000227148.1	ENST00000450891.1	RP11-196D18.1	RP11-196D18.1-001	NA	NA	NA	inter
CUST_47276_PI429285431	0.91932607	A	0.90867454	A	1.00741040010749	0	lncRNA	51346-1_{1..838}	"gi|310123986|ref|XR_109599.1| PREDICTED: Homo sapiens uncharacterized LOC100505663, transcript variant 1 (LOC100505663), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310123986|ref|XR_109599.1| PREDICTED: Homo sapiens uncharacterized LOC100505663, transcript variant 1 (LOC100505663), misc_RNA"	Chr20	 38632999	 38633836	+	100505663	XR_109599.2	NA	NA	NA	NA	NA	inter
CUST_47984_PI429285431	6.9420567	P	7.1846323	P	0.845234992027657	0	lncRNA	51872-1_{1..792}	"gi|374349208|ref|NR_046211.1| Homo sapiens ELK2A, member of ETS oncogene family, pseudogene (ELK2AP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374349208|ref|NR_046211.1| Homo sapiens ELK2A, member of ETS oncogene family, pseudogene (ELK2AP), non-coding RNA"	NA	NA	NA	NA	NA	NR_046211.1	NA	NA	NA	NA	NA	Unknown
CUST_23354_PI429285431	0.9051451	A	0.89066863	A	1.01008483700974	0	lncRNA	24924-1_{1..734}	lnc-LIN7A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIN7A-1:1	chr12	 80987448	 80988181	-	lnc-LIN7A-1	lnc-LIN7A-1:1	ENSG00000257429.1	RP11-272K23.3	PTPRQ	NA	chr12:80977448-80997480	inner
CUST_37677_PI429285431	4.92749	P	4.8912225	P	1.02545735735671	0	lncRNA	38770-2_{3001..3891}	n346164|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1714|NULL|-1.4388000|-0.2546459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n346164|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1714|NULL|-1.4388000|-0.2546459	chr19	 40172938	 40173828	+	NA	NA	NA	NA	LGALS14	"hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60chr19:40188546-40197036"	NA	inter
CUST_16573_PI429285431	4.7634983	P	5.269134	P	0.704349948885581	0	lncRNA	18274-1_{1..230}	lnc-ID3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ID3-2:1	chr1	 23878112	 23878341	-	lnc-ID3-2	lnc-ID3-2:1	XLOC_000736	linc-E2F2-2	ID3	NA	chr1:23884409-23886322	inter
CUST_8764_PI429285431	5.4722137	P	5.289386	P	1.13510652911863	0	lncRNA	10307-1_{1..1207}	lnc-PSD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PSD4-1:1	chr2	113996666	113997872	+	lnc-PSD4-1	lnc-PSD4-1:1	ENSG00000189223	AC016683.6	PAX8	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80chr2:113986666-114007267"	NA	inner
CUST_26401_PI429285431	5.67186	P	5.343203	P	1.25584376944072	0	lncRNA	27908-1_{1..553}	lnc-DSG1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DSG1-2:1	chr18	 28742498	 28743050	+	lnc-DSG1-2	lnc-DSG1-2:1	ENSG00000265888.1	RP11-408H20.2	DSC1	"hg19_refFlat_DSC1:range=chr18:28710766-287425575'pad=0,hg19_refFlat_DSC1:range=chr18:28710766-287425575'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_DSC1:range=chr18:28710477-287425575'pad=0,hg19_refFlat_DSC1:range=chr18:28710477-287425575'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60chr18:28732498-28742819"	NA	inner
LNCA_21_P0013111	0.9244756	A	1.7135936	A	0.578697774077115	0	lncRNA	THC2534418	NA	NA	NA	NA	XLOC_l2_013153	NA	NA	THC2534418	NA	"BROAD Institute lincRNA (XLOC_l2_013153), lincRNA [TCONS_l2_00024973]"	NA	NA	Agilent_HUMAN_G3V2	THC2534418	THC2534418	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21165_PI429285431	2.1851234	A	2.7845936	A	0.659996280911772	0	lncRNA	22788-1_{1..554}	lnc-LSAMP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-LSAMP-1:1	chr3	117716029	117716582	-	lnc-LSAMP-1	lnc-LSAMP-1:1	ENSG00000239268.2	RP11-384F7.2	NA	NA	NA	inter
CUST_40072_PI429285431	1.6166759	A	1.3412657	A	1.21033817451097	0	lncRNA	40921-2_{3001..6000}	n407337|NR_026800|lncRNA|Homosapiens||RefGeneNoncode|NR_026800||1.6663100|-0.1674070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407337|NR_026800|lncRNA|Homosapiens||RefGeneNoncode|NR_026800||1.6663100|-0.1674070	chr14	106386837	106389836	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19092_PI429285431	6.1588383	P	6.5280766	P	0.774191138742423	0	lncRNA	20782-1_{1..290}	lnc-NDST1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,"	>lnc-NDST1-1:1	chr5	149828968	149829257	+	lnc-NDST1-1	lnc-NDST1-1:1	Alpha-250/Alpha-280	Alpha-280	RPS14	NA	chr5:149823792-149829319	inner
CUST_28759_PI429285431	1.1387863	A	1.5072942	A	0.774583191364248	0	lncRNA	30466-1_{1..1537}	n326162|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000095377|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000095377|-0.9462310|-0.2859511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326162|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000095377|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000095377|-0.9462310|-0.2859511	chr1	236710306	236711842	-	NA	NA	NA	NA	LGALS8	"hg19_refFlat_LGALS8:range=chr1:236689371-2367114615'pad=0,hg19_refFlat_LGALS8:range=chr1:236689371-2367114615'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr1:236700306-236716281"	NA	inner
CUST_36152_PI429285431	1.0350493	A	0.9107183	A	1.09000216459516	0	lncRNA	37427-1_{1..720}	n344714|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_263|NULL|-1.7269000|-0.1171459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344714|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_263|NULL|-1.7269000|-0.1171459	chr21	 15448962	 15449681	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25506_PI429285431	0.9101659	A	1.2205716	A	0.806414955536553	0	lncRNA	27036-1_{1..387}	lnc-TMEM85-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM85-1:1	chr15	 34549773	 34550159	+	lnc-TMEM85-1	lnc-TMEM85-1:1	ENSG00000259468.1	RP11-1084A12.2	SLC12A6	NA	chr15:34539773-34560033	inner
CUST_31580_PI429285431	5.084562	P	3.7813108	P	2.46784399968455	0	lncRNA	33337-1_{1..2603}	n338084|AK055438|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|471|NULL|-0.0799572|-0.2985653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338084|AK055438|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|471|NULL|-0.0799572|-0.2985653	chr15	 83802877	 83805479	-	NA	NA	NA	NA	HDGFRP3	"hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.81;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TM6SF1:range=chr15:83776433-838054245'pad=0,hg19_refFlat_TM6SF1:range=chr15:83776433-838054245'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr15:83806816-83815473"	NA	inner
CUST_48540_PI429285431	4.8740616	P	4.0576587	P	1.76100975389237	0	lncRNA	52389-1_{1..1520}	hg19_lincRNAsTranscripts_TCONS_l2_00013890 range=chr2:110988627-111024103 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013890 range=chr2:110988627-111024103 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	110988627	110990146	+	NA	NA	NA	NA	LOC100287119	NA	chr2:111025028-111034103	inter
CUST_36550_PI429285431	4.557065	P	4.342401	P	1.16043362087531	0	lncRNA	37746-1_{1..1363}	n345048|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_597|NULL|-1.5775800|-0.2191306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345048|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_597|NULL|-1.5775800|-0.2191306	chr9	 33019475	 33020837	+	NA	NA	NA	NA	DNAJA1	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_LAGE3:range=chrX:153706283-1537072545'pad=0,hg19_refFlat_LAGE3:range=chrX:153706283-1537072545'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00chr9:33025209-33034180"	NA	inter
CUST_12038_PI429285431	2.7927904	A	3.206927	A	0.750468488106157	0	lncRNA	13622-1_{1..3000}	lnc-PI3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PI3-1:2	chr20	 43816862	 43819861	+	lnc-PI3-1	lnc-PI3-1:2	XLOC_013531	linc-SEMG1	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00"	NA	inter
CUST_33516_PI429285431	0.9041479	A	0.89934283	A	1.00333617340301	0	lncRNA	35085-2_{3001..4161}	n340253|L10123|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2714|NULL|11.2326000|-0.3322200	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340253|L10123|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2714|NULL|11.2326000|-0.3322200	chr4	147950072	147951232	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26056_PI429285431	0.9003104	A	0.89053345	A	1.00679988023909	0	lncRNA	27570-1_{1..1928}	lnc-PAK7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PAK7-1:1	chr20	  9495411	  9497338	-	lnc-PAK7-1	lnc-PAK7-1:1	ENSG00000225988.1	RP5-1119D9.4	C20orf103	"hg19_refFlat_LAMP5:range=chr20:9495500-95104675'pad=0,hg19_refFlat_LAMP5:range=chr20:9495500-95104675'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30chr20:9495005-9505645"	NA	inner
CUST_10442_PI429285431	0.9129854	A	0.90232277	A	1.00741815108614	0	lncRNA	11968-2_{3001..3206}	lnc-SLC15A3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC15A3-3:1	chr11	 60813538	 60813743	-	lnc-SLC15A3-3	lnc-SLC15A3-3:1	XLOC_009447	linc-SLC15A3	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90"	NA	inter
CUST_47055_PI429285431	1.0340359	A	1.9046183	A	0.546926018087099	0	lncRNA	51142-1_{1..1707}	"gi|322303371|ref|NR_037801.1| Homo sapiens zinc finger protein 625 (ZNF625), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|322303371|ref|NR_037801.1| Homo sapiens zinc finger protein 625 (ZNF625), transcript variant 2, non-coding RNA"	Chr19	 12255705	 12257411	-	90589	NR_037801.1	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50"	NA	inter
CUST_47403_PI429285431	4.1586246	P	4.348378	P	0.876755572421684	0	lncRNA	51446-1_{1..800}	"gi|386869316|ref|NR_047476.1| Homo sapiens LRRC3 antisense RNA 1 (head to head) (LRRC3-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|386869316|ref|NR_047476.1| Homo sapiens LRRC3 antisense RNA 1 (head to head) (LRRC3-AS1), non-coding RNA"	Chr21	 45870869	 45871668	-	100861510	NR_047476.1	NA	NA	NA	NA	NA	inter
CUST_28044_PI429285431	0.9032045	A	0.91350925	A	0.992882740106343	0	lncRNA	29660-1_{1..333}	n325307|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326160|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326160|-0.8564610|-0.3019591	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325307|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326160|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326160|-0.8564610|-0.3019591	chr2	 52944876	 52945208	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25013_PI429285431	0.9277092	A	1.2995859	A	0.772776592213836	0	lncRNA	26553-1_{1..468}	lnc-KLF13-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLF13-1:3	chr15	 31516198	 31516665	+	lnc-KLF13-1	lnc-KLF13-1:3	ENSG00000259448.1	RP11-16E12.1	LOC283710	NA	chr15:31514970-31523050	inner
LNCA_21_P0011041	13.153561	P	11.87009	P	2.43423929931301	0	lncRNA	TCONS_l2_00005546	NA	NA	NA	NA	XLOC_l2_002910	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002910), lincRNA [TCONS_l2_00005546]"	chr12:17144740-17144925	hs|12p12.3	Agilent_HUMAN_G3V2	TCONS_l2_00005546	TCONS_l2_00005546	chr12	 17144740	 17144925	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11091_PI429285431	8.093609	P	8.060773	P	1.023021170029	0	lncRNA	12645-1_{1..255}	lnc-AL162389.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL162389.1-1:1	chr9	110477692	110477946	-	lnc-AL162389.1-1	lnc-AL162389.1-1:1	XLOC_007824	linc-KLF4-1	NA	NA	NA	inter
CUST_40166_PI429285431	4.8871183	P	5.743283	P	0.552419173886546	0	lncRNA	41002-1_{1..1872}	n407884|NR_027447|lncRNA|Homosapiens||RefGeneNoncode|NR_027447||-0.7816770|-0.1233973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407884|NR_027447|lncRNA|Homosapiens||RefGeneNoncode|NR_027447||-0.7816770|-0.1233973	chr9	139979397	139981268	-	NA	NA	NA	NA	MAN1B1	"hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_C11orf44:range=chr11:130542874-1305840925'pad=0,hg19_refFlat_C11orf44:range=chr11:130542874-1305840925'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-62.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00chr9:139981417-139991269"	NA	inter
CUST_32646_PI429285431	1.8566352	A	1.9914382	A	0.910794194043327	0	lncRNA	34301-1_{1..3000}	n339270|AK125886|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1702|NULL|-1.2554000|-0.3098642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339270|AK125886|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1702|NULL|-1.2554000|-0.3098642	chr16	 70835989	 70838988	-	NA	NA	NA	NA	VAC14	NA	chr16:70825989-70835061	inter
LNCA_21_P0011253	0.9246082	A	0.9120419	A	1.00874834041903	0	lncRNA	TCONS_l2_00007890	NA	NA	NA	NA	XLOC_l2_004283	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004283), lincRNA [TCONS_l2_00007890]"	chr14:95984474-95984533	hs|14q32.13	Agilent_HUMAN_G3V2	TCONS_l2_00007890	TCONS_l2_00007890	chr14	 95984474	 95984533	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37933_PI429285431	7.663626	P	7.7497334	P	0.942061140488017	0	lncRNA	39022-1_{1..381}	n346477|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2027|NULL|-1.3013700|-0.2161671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346477|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2027|NULL|-1.3013700|-0.2161671	chr2	110744702	110745082	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZBTB45:range=chr19:59025421-590290405'pad=0,hg19_refFlat_ZBTB45:range=chr19:59025421-590290405'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60"	NA	inter
CUST_18309_PI429285431	8.874012	P	8.960172	P	0.942026793996717	0	lncRNA	20036-3_{6001..9000}	lnc-ITSN1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ITSN1-2:2	chr21	 35347538	 35350537	+	lnc-ITSN1-2	lnc-ITSN1-2:2	ENSG00000237945	AP000569.8	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-54.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
CUST_11825_PI429285431	6.1949716	P	4.995681	P	2.2962673149725	0	lncRNA	13407-1_{1..634}	lnc-RP11-10A14.4.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-10A14.4.1-3:1	chr8	  8957369	  8958002	+	lnc-RP11-10A14.4.1-3	lnc-RP11-10A14.4.1-3:1	XLOC_006702	linc-TNKS-5	NA	NA	NA	inter
CUST_13238_PI429285431	0.91107404	A	1.0525713	A	0.906577800946362	0	lncRNA	14866-1_{1..627}	lnc-FRG1-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRG1-4:6	chr4	190497379	190498005	+	lnc-FRG1-4	lnc-FRG1-4:6	XLOC_003840	linc-FRG1-4	NA	NA	NA	inter
CUST_43916_PI429285431	1.4929361	A	0.9696425	A	1.43723263514088	0	lncRNA	48629-1_{1..1524}	"gi|210032802|ref|NR_015399.1| Homo sapiens uncharacterized LOC150568 (LOC150568), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|210032802|ref|NR_015399.1| Homo sapiens uncharacterized LOC150568 (LOC150568), non-coding RNA"	Chr2	105050805	105052328	+	150568	NR_015399.1	NA	NA	NA	NA	NA	inter
CUST_28548_PI429285431	0.9056319	A	1.0479944	A	0.906034254194231	0	lncRNA	30221-1_{1..291}	n325898|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050002|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050002|-1.0280400|-0.3049797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325898|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050002|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050002|-1.0280400|-0.3049797	chr10	103454398	103454688	-	NA	NA	NA	NA	FBXW4	NA	chr10:103444398-103454743	inner
CUST_25889_PI429285431	1.7256505	A	2.7108104	A	0.505169730040302	0	lncRNA	27408-2_{3001..3361}	lnc-YTHDC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YTHDC2-1:1	chr5	112774242	112774602	+	lnc-YTHDC2-1	lnc-YTHDC2-1:1	ENSG00000232633.3	CTD-2201G3.1	MCC	"hg19_refFlat_TSSK2:range=chr22:19118913-191199895'pad=0,hg19_refFlat_TSSK2:range=chr22:19118913-191199895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_TSSK1B:range=chr5:112769433-1127705365'pad=0,hg19_refFlat_TSSK1B:range=chr5:112769433-1127705365'pad=0 3'pad=0 strand=- repeatMasking=none,-101.10chr5:112761242-112782038"	NA	inner
CUST_4094_PI429285431	0.96045434	A	0.9763043	A	0.989073774509899	0	lncRNA	4055-1_{1..598}	"transcript_id ""ENST00000366405.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000366405.2"" | genecode_v17"	chr11	116645826	116646423	-	ENSG00000231611.1	ENST00000366405.2	AP006216.11	AP006216.11-001	ZNF259	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80chr11:116649276-116656592"	NA	inter
CUST_6543_PI429285431	2.8133302	A	2.5098972	A	1.2340775012809	0	lncRNA	6487-1_{1..340}	"transcript_id ""ENST00000599817.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599817.1"" | genecode_v17"	chr19	 46699035	 46699374	-	ENSG00000268621.1	ENST00000599817.1	AC006262.5	AC006262.5-003	NA	NA	NA	inter
CUST_3255_PI429285431	0.9216562	A	0.9092709	A	1.00862179115429	0	lncRNA	3234-1_{1..563}	"transcript_id ""ENST00000517983.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517983.1"" | genecode_v17"	chr8	103991013	103991575	+	ENSG00000254281.1	ENST00000517983.1	KB-1507C5.4	KB-1507C5.4-001	NA	NA	NA	inter
CUST_41786_PI429285431	0.8977677	A	0.89673364	A	1.00071701270433	0	lncRNA	43363-1_{1..66}	ENST00000577921 ncrna:miRNA chromosome:GRCh37:12:1769481:1769546:-1 gene:ENSG00000266043 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577921 ncrna:miRNA chromosome:GRCh37:12:1769481:1769546:-1 gene:ENSG00000266043 gene_biotype:miRNA transcript_biotype:miRNA	chr12	  1769481	  1769546	-	ENSG00000266043	ENST00000577921	NA	NA	NA	NA	NA	inter
CUST_24_PI429285431	1.4141098	A	1.5459719	A	0.912652720281162	0	lncRNA	23-1_{1..575}	"transcript_id ""ENST00000519008.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519008.1"" | genecode_v17"	chr8	 47733859	 47734433	+	ENSG00000253314.1	ENST00000519008.1	LINC00293	LINC00293-002	NA	NA	NA	inter
CUST_391_PI429201921	1.1224245	A	1.7143427	A	0.663460187052796	0	lncRNA	247-1_{1..3000}	TC01004143.hg.1	TCONS_l2_00000051-XLOC_l2_000033 // Broad TUCP // linc-C1orf93 chr1:+:2499253-2508846 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:2499253-2508846	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00000051-XLOC_l2_000033	linc-C1orf93	chr1	  2499253	  2508846	+	NA	NA	NA	NA	NFIA	NA	chr1:61704666-61729182	Unknown
CUST_26440_PI429285431	1.3842878	A	1.0500593	A	1.26070305112801	0	lncRNA	27948-1_{1..419}	lnc-BOLA3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BOLA3-1:3	chr2	 74208262	 74208680	-	lnc-BOLA3-1	lnc-BOLA3-1:3	ENSG00000237883.1	DGUOK-AS1	NA	"hg19_refFlat_DGUOK:range=chr2:74154038-741858635'pad=0,hg19_refFlat_DGUOK:range=chr2:74154038-741858635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90"	NA	inter
CUST_5342_PI429285431	1.168523	A	0.9032294	A	1.20188061697557	0	lncRNA	5280-1_{1..358}	"transcript_id ""ENST00000560176.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560176.1"" | genecode_v17"	chr15	 96714810	 96715167	+	ENSG00000259359.1	ENST00000560176.1	RP11-327J17.2	RP11-327J17.2-002	NA	NA	NA	inter
CUST_21929_PI429285431	6.8769364	P	7.3831387	P	0.704073378777353	0	lncRNA	23537-1_{1..428}	lnc-USP24-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP24-1:1	chr1	 55457586	 55458013	-	lnc-USP24-1	lnc-USP24-1:1	ENSG00000233271.1	RP11-12C17.2	BSND	"hg19_refFlat_TMEM61:range=chr1:55446739-554577765'pad=0,hg19_refFlat_TMEM61:range=chr1:55446739-554577765'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.20chr1:55464617-55467947"	NA	inner
LNCA_21_P0003007	2.0379558	A	1.5308452	A	1.4212009912267	0	lncRNA	ENST00000491578	NA	NA	NA	NA	XLOC_002760	NA	ENST00000491578	NA	NA	"BROAD Institute lincRNA (XLOC_002760), lincRNA [TCONS_00005570]"	chr3:112880794-112880853	hs|3q13.2	Agilent_HUMAN_G3V2	ENST00000491578	ENST00000491578	chr3	112880794	112880853	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1179_PI429285431	2.9965625	A	0.9323001	A	4.18220099797903	0	lncRNA	1169-1_{1..833}	"transcript_id ""ENST00000456895.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456895.1"" | genecode_v17"	chr2	181940778	181941610	-	ENSG00000238171.1	ENST00000456895.1	AC068196.1	AC068196.1-001	NA	NA	NA	inter
CUST_2455_PI429285431	3.2140296	P	3.6033509	P	0.763488694860189	0	lncRNA	2447-1_{1..411}	"transcript_id ""ENST00000513771.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513771.1"" | genecode_v17"	chr5	180618046	180618456	-	ENSG00000248473.1	ENST00000513771.1	CTC-338M12.2	CTC-338M12.2-001	TRIM7	NA	chr5:180620924-180628852	inter
CUST_22329_PI429285431	6.977024	P	7.1257796	P	0.902028173676672	0	lncRNA	23928-1_{1..3000}	lnc-RP11-324D17.2.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-324D17.2.1-3:1	chr16	 54033349	 54036348	+	lnc-RP11-324D17.2.1-3	lnc-RP11-324D17.2.1-3:1	ENSG00000261389.1	RP11-357N13.7	FTO	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-23.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10chr16:54023349-54058240"	NA	inner
CUST_42460_PI429285431	9.191623	P	9.343155	P	0.900293931371031	0	lncRNA	45198-1_{1..66}	ENST00000516733 ncrna:snoRNA chromosome:GRCh37:9:136217702:136217767:1 gene:ENSG00000252542 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516733 ncrna:snoRNA chromosome:GRCh37:9:136217702:136217767:1 gene:ENSG00000252542 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	136217702	136217767	+	ENSG00000252542	ENST00000516733	NA	NA	RPL7A	NA	chr9:136215069-136218280	inner
CUST_51025_PI429285431	4.6818295	P	4.8703256	P	0.8775199926442	0	lncRNA	54668-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00007046 range=chr13:19379529-19393469 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007046 range=chr13:19379529-19393469 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 19379529	 19382528	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002833	4.574762	P	4.609994	P	0.975874817585748	0	lncRNA	ENST00000418972	NA	NA	NA	NA	XLOC_003016	NA	ENST00000418972	NA	NA	"BROAD Institute lincRNA (XLOC_003016), lincRNA [TCONS_00005723]"	chr3:2004127-2004068	hs|3p26.3	Agilent_HUMAN_G3V2	ENST00000418972	ENST00000418972	chr3	  2004068	  2004127	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3737_PI429285431	1.5813962	A	1.844923	A	0.833048963840621	0	lncRNA	3706-1_{1..384}	"transcript_id ""ENST00000415959.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415959.1"" | genecode_v17"	chr10	 80027085	 80027468	+	ENSG00000227136.2	ENST00000415959.1	LINC00595	LINC00595-001	NA	NA	NA	inter
CUST_30925_PI429285431	13.169725	P	13.079876	P	1.06425878573929	0	lncRNA	32713-1_{1..454}	n336980|BC107040|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338604|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338604|1.1127000|-0.1501813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336980|BC107040|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338604|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338604|1.1127000|-0.1501813	chrX	 54841717	 54842170	+	NA	NA	NA	NA	MAGED2	NA	chrX:54834171-54842445	inner
CUST_50521_PI429285431	1.4798758	A	1.6401147	A	0.894876873435983	0	lncRNA	54217-1_{1..1117}	hg19_lincRNAsTranscripts_TCONS_l2_00030614 range=chrX:135888046-135897375 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030614 range=chrX:135888046-135897375 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	135888046	135889162	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31175_PI429285431	1.5252393	A	1.0876597	A	1.35433026939202	0	lncRNA	32970-1_{1..372}	n337603|X65179|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000398795|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000398795|0.5709380|-0.4337587	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337603|X65179|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000398795|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000398795|0.5709380|-0.4337587	chr2	 75280619	 75280990	-	NA	NA	NA	NA	TACR1	NA	chr2:75273590-75290991	inner
CUST_83_PI429285431	5.9960456	P	5.982088	P	1.00972162200713	0	lncRNA	77-1_{1..2558}	"transcript_id ""ENST00000382897.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000382897.2"" | genecode_v17"	chr18	 53670844	 53673401	-	ENSG00000206129.3	ENST00000382897.2	CTD-2008L17.2	CTD-2008L17.2-001	NA	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20"	NA	inter
CUST_18819_PI429285431	0.9252125	A	0.9167186	M	1.00590488836279	0	lncRNA	20513-1_{1..1860}	lnc-TOP3B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TOP3B-1:1	chr22	 22398080	 22399939	-	lnc-TOP3B-1	lnc-TOP3B-1:1	ENSG00000197549	PRAMEL	NA	NA	NA	inter
CUST_36118_PI429285431	0.9048221	A	0.90037566	A	1.00308679170976	0	lncRNA	37408-3_{6001..8544}	n344693|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_242|NULL|-1.5480700|-0.3232083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n344693|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_242|NULL|-1.5480700|-0.3232083	chr4	 24433775	 24436318	-	NA	NA	NA	NA	DHX15	"hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.72;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr4:24529087-24536490"	NA	inter
CUST_9819_PI429285431	0.9161938	A	1.3320758	A	0.749561105998364	0	lncRNA	11337-1_{1..379}	lnc-RP11-890B15.2.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-890B15.2.1-3:1	chr11	130646630	130647008	-	lnc-RP11-890B15.2.1-3	lnc-RP11-890B15.2.1-3:1	XLOC_009605	linc-ADAMTS8-2	NA	NA	NA	inter
CUST_6117_PI429285431	0.91139984	A	0.9089598	A	1.00169273791255	0	lncRNA	6043-1_{1..459}	"transcript_id ""ENST00000583122.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583122.1"" | genecode_v17"	chr18	 22069339	 22069797	+	ENSG00000264695.1	ENST00000583122.1	RP11-178F10.2	RP11-178F10.2-001	HRH4	NA	chr18:22059339-22059921	inter
CUST_42905_PI429285431	4.1643405	P	4.31334	P	0.901875690948491	0	lncRNA	46003-1_{1..75}	ENST00000363738 ncrna:snoRNA chromosome:GRCh37:14:101434448:101434522:1 gene:ENSG00000200608 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363738 ncrna:snoRNA chromosome:GRCh37:14:101434448:101434522:1 gene:ENSG00000200608 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101434448	101434522	+	ENSG00000200608	ENST00000363738	NA	NA	NA	NA	NA	inter
CUST_24430_PI429285431	0.94238085	A	0.9196301	A	1.01589461483277	0	lncRNA	25983-1_{1..639}	lnc-IYD-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-IYD-2:1	chr6	150946867	150947505	+	lnc-IYD-2	lnc-IYD-2:1	ENSG00000224029.1	RP11-136K14.2	PLEKHG1	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60chr6:150936867-150957222"	NA	inner
CUST_19934_PI429285431	0.92364335	A	0.9086607	A	1.01043929476607	0	lncRNA	21589-1_{1..433}	lnc-ECHDC3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ECHDC3-2:1	chr10	 11072602	 11073034	+	lnc-ECHDC3-2	lnc-ECHDC3-2:1	ENSG00000229206.1	RP11-397O4.1	CELF2	NA	chr10:11062602-11082831	inner
CUST_41989_PI429285431	1.0227944	A	1.3694901	A	0.786383142266953	0	lncRNA	43819-1_{1..123}	ENST00000410153 ncrna:miRNA chromosome:GRCh37:5:77352448:77352570:-1 gene:ENSG00000222085 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410153 ncrna:miRNA chromosome:GRCh37:5:77352448:77352570:-1 gene:ENSG00000222085 gene_biotype:miRNA transcript_biotype:miRNA	chr5	 77352448	 77352570	-	ENSG00000222085	ENST00000410153	NA	NA	AP3B1	NA	chr5:77342448-77362570	inner
CUST_9484_PI429285431	0.94365203	A	0.9141371	A	1.0206688937092	0	lncRNA	10992-1_{1..3000}	lnc-MAGI2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAGI2-1:2	chr7	 79092173	 79095172	-	lnc-MAGI2-1	lnc-MAGI2-1:2	XLOC_006507	linc-MAGI2-3	MAGI2	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.04;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90chr7:79082173-79082890"	NA	inter
CUST_672_PI429285431	0.942237	A	1.3853297	A	0.735556108440222	0	lncRNA	665-1_{1..319}	"transcript_id ""ENST00000425763.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425763.1"" | genecode_v17"	chr2	  5689912	  5690230	-	ENSG00000232835.1	ENST00000425763.1	AC107057.1	AC107057.1-001	NA	NA	NA	inter
CUST_51106_PI429285431	0.9263373	A	0.9168866	A	1.0065722289929	0	lncRNA	54744-1_{1..2712}	hg19_lincRNAsTranscripts_TCONS_l2_00006966 range=chr13:90208156-90214259 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006966 range=chr13:90208156-90214259 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 90208156	 90210867	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1579_PI429285431	1.1829561	A	0.9359561	A	1.18673679765653	0	lncRNA	1568-1_{1..3000}	"transcript_id ""ENST00000482787.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000482787.3"" | genecode_v17"	chr3	181670131	181673130	+	ENSG00000242512.3	ENST00000482787.3	RP11-416O18.1	RP11-416O18.1-001	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20"	NA	inter
LNCA_32_P135517	4.279199	P	4.766328	P	0.713443456756437	0	lncRNA	XR_109318	XR_109318	XR_109318	100506105	Hs.647355	LOC100506105	uncharacterized LOC100506105	NA	THC2568448	NA	"PREDICTED: Homo sapiens hypothetical LOC100506105 (LOC100506105), miscRNA [XR_109318]"	chr16:71497896-71497955	hs|16q22.2	Agilent_HUMAN_G3V2	XR_109318	XR_109318	chr16	 71497896	 71497955	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29070_PI429285431	1.3210827	A	1.4955927	A	0.886068414154448	0	lncRNA	30799-1_{1..369}	n326561|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026985|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026985|-1.4023400|-0.2940394	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326561|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026985|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026985|-1.4023400|-0.2940394	chr1	 76249596	 76249964	+	NA	NA	NA	NA	MSH4	NA	chr1:76262630-76267629	inter
CUST_36818_PI429285431	0.92192125	A	0.91110986	A	1.0075220339211	0	lncRNA	37988-2_{3001..5900}	n345296|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_845|NULL|-1.4014700|-0.2549410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n345296|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_845|NULL|-1.4014700|-0.2549410	chr15	 80491538	 80494437	-	NA	NA	NA	NA	ARNT2	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20chr15:80696692-80699989"	NA	inter
CUST_27323_PI429285431	3.5155988	P	3.3622308	P	1.11216280978468	0	lncRNA	28883-1_{1..475}	n324478|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041166|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041166|-1.1915700|-0.3239922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324478|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041166|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041166|-1.1915700|-0.3239922	chr6	 72182900	 72183374	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1071_PI429285431	0.9150273	A	0.910735	A	1.00297962593024	0	lncRNA	1060-1_{1..563}	"transcript_id ""ENST00000450531.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450531.1"" | genecode_v17"	chr2	130626766	130627328	-	ENSG00000229536.1	ENST00000450531.1	AC079776.1	AC079776.1-001	NA	NA	NA	inter
CUST_19059_PI429285431	1.1946087	A	1.3892896	A	0.873766136992364	0	lncRNA	20750-1_{1..389}	lnc-C14orf101-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C14orf101-4:2	chr14	 57386359	 57386747	+	lnc-C14orf101-4	lnc-C14orf101-4:2	ENSG00000248550	RP11-1077A2.1	NA	NA	NA	inter
CUST_5435_PI429285431	7.6601734	P	7.4309306	P	1.17221954709438	0	lncRNA	5369-1_{1..362}	"transcript_id ""ENST00000575792.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000575792.1"" | genecode_v17"	chr16	 14417151	 14417512	+	ENSG00000262454.1	ENST00000575792.1	RP11-65J21.3	RP11-65J21.3-002	NA	NA	NA	inter
CUST_51435_PI429285431	4.2413406	P	4.059656	P	1.1342074989507	0	lncRNA	55012-1_{1..443}	hg19_lincRNAsTranscripts_TCONS_l2_00009631 range=chr16:21396874-21412471 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009631 range=chr16:21396874-21412471 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 21396874	 21397316	+	NA	NA	NA	NA	NPIPL3	NA	chr16:21413455-21422471	inter
CUST_51843_PI429285431	1.3782922	A	1.80672	A	0.743071117880697	0	lncRNA	55398-1_{1..209}	hg19_lincRNAsTranscripts_TCONS_l2_00013122 range=chr19:43130188-43130796 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013122 range=chr19:43130188-43130796 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 43130188	 43130396	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50514_PI429285431	0.90642864	A	0.9021363	A	1.00297965373874	0	lncRNA	54210-1_{1..522}	hg19_lincRNAsTranscripts_TCONS_l2_00030598 range=chrX:130877154-130890735 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030598 range=chrX:130877154-130890735 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	130877154	130877675	-	NA	NA	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-22.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
CUST_28443_PI429285431	0.9079895	A	0.9114752	A	0.997586813300613	0	lncRNA	30103-1_{1..411}	n325769|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044374|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044374|-1.4807800|-0.4022248	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325769|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044374|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044374|-1.4807800|-0.4022248	chr13	 30354687	 30355097	+	NA	NA	NA	NA	UBL3	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-18.60;hg19_refFlat_GABRG2:range=chr5:161495006-1615803745'pad=0,hg19_refFlat_GABRG2:range=chr5:161495006-1615803745'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40chr13:30344687-30365532"	NA	inner
CUST_38198_PI429285431	0.9254959	A	0.92998016	A	0.99689657343886	0	lncRNA	39266-1_{1..1116}	n381527|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kgd.2||-0.1509670|-0.2881192	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381527|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kgd.2||-0.1509670|-0.2881192	chr10	 91037422	 91038537	-	NA	NA	NA	NA	IFIT3	NA	chr10:91087602-91100725	inner
CUST_18289_PI429285431	2.8864927	A	3.7091014	P	0.565418620406317	0	lncRNA	20020-1_{1..590}	lnc-AC016745.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AC016745.1-1:3	chr2	114300124	114300713	-	lnc-AC016745.1-1	lnc-AC016745.1-1:3	ENSG00000231943	AL078621.4	NA	NA	NA	inter
CUST_14668_PI429285431	0.910713	A	0.9071977	A	1.00243959125558	0	lncRNA	16337-1_{1..705}	lnc-AF165138.7.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AF165138.7.1-3:1	chr21	 16135198	 16135902	-	lnc-AF165138.7.1-3	lnc-AF165138.7.1-3:1	XLOC_014003	linc-SAMSN1-3	NA	NA	NA	inter
CUST_12069_PI429285431	0.9078546	A	1.5959966	A	0.620652653840091	0	lncRNA	13660-1_{1..1203}	lnc-TRAF5-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRAF5-6:4	chr1	211857996	211859198	+	lnc-TRAF5-6	lnc-TRAF5-6:4	XLOC_000550	linc-DTL-2	NEK2	NA	chr1:211847996-211848972	inter
CUST_9271_PI429285431	3.2253394	P	3.8080263	P	0.66771904723818	0	lncRNA	10776-1_{1..872}	lnc-GLRX3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLRX3-2:1	chr10	131918330	131919201	+	lnc-GLRX3-2	lnc-GLRX3-2:1	ENSG00000244919	AL139123.1	NA	NA	NA	inter
CUST_29045_PI429285431	1.5415566	A	1.1388135	A	1.32201917287431	0	lncRNA	30774-1_{1..509}	n326535|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029205|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029205|-1.3147500|-0.3404178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326535|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029205|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029205|-1.3147500|-0.3404178	chr1	 90027060	 90027568	+	NA	NA	NA	NA	LRRC8B	NA	chr1:90017060-90038639	inner
CUST_43777_PI429285431	0.91264355	A	0.906901	A	1.0039883647839	0	lncRNA	48509-1_{1..623}	"gi|310118866|ref|XR_109992.1| PREDICTED: Homo sapiens uncharacterized LOC727944, transcript variant 2 (LOC727944), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118866|ref|XR_109992.1| PREDICTED: Homo sapiens uncharacterized LOC727944, transcript variant 2 (LOC727944), misc_RNA"	NA	NA	NA	NA	NA	XR_109992.1	NA	NA	NA	NA	NA	Unknown
CUST_6042_PI429285431	0.9293276	A	1.0587811	A	0.914177679664322	0	lncRNA	5968-1_{1..826}	"transcript_id ""ENST00000583163.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583163.1"" | genecode_v17"	chr18	  1509184	  1510009	+	ENSG00000266602.1	ENST00000583163.1	RP11-476K15.1	RP11-476K15.1-002	NA	NA	NA	inter
CUST_49819_PI429285431	0.92656887	A	0.89772165	A	1.02019661569952	0	lncRNA	53577-1_{1..462}	hg19_lincRNAsTranscripts_TCONS_l2_00025952 range=chr7:64541828-64548206 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025952 range=chr7:64541828-64548206 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 64541828	 64542289	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005768	0.9580669	A	0.9260638	A	1.02243072756199	0	lncRNA	ENST00000519500	NA	NA	NA	NA	XLOC_006935	NA	ENST00000519500	NA	NA	"BROAD Institute lincRNA (XLOC_006935), lincRNA [TCONS_00014867]"	chr8:135854504-135854698	hs|8q24.22	Agilent_HUMAN_G3V2	ENST00000519500	ENST00000519500	chr8	135854504	135854698	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38356_PI429285431	8.210495	P	8.577716	P	0.775274436427281	0	lncRNA	39398-1_{1..570}	n382124|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vvv.1||-0.7560800|-0.1990332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n382124|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vvv.1||-0.7560800|-0.1990332	chr14	 19919491	 19920060	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2649_PI429285431	1.9102702	A	1.8965352	A	1.00956583946983	0	lncRNA	2636-1_{1..453}	"transcript_id ""ENST00000455011.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455011.1"" | genecode_v17"	chr6	141167095	141167547	-	ENSG00000234147.1	ENST00000455011.1	RP3-460G2.2	RP3-460G2.2-001	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60"	NA	inter
CUST_798_PI429285431	2.3299737	A	2.6199267	A	0.81792870453759	0	lncRNA	791-1_{1..1605}	"transcript_id ""ENST00000567376.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567376.2"" | genecode_v17"	chr2	 21222185	 21223789	-	ENSG00000261012.2	ENST00000567376.2	RP11-116D2.1	RP11-116D2.1-001	APOB	NA	chr2:21224301-21233789	inter
CUST_20802_PI429285431	0.90443194	A	0.90066755	A	1.0026126834392	0	lncRNA	22433-1_{1..483}	lnc-CHN2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHN2-2:1	chr7	 29049639	 29050121	+	lnc-CHN2-2	lnc-CHN2-2:1	ENSG00000228093.2	AC005162.3	CPVL	NA	chr7:29039639-29059868	inner
CUST_4862_PI429285431	8.17929	P	8.285818	P	0.928820680656758	0	lncRNA	4805-1_{1..814}	"transcript_id ""ENST00000554921.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554921.1"" | genecode_v17"	chr14	 63589751	 63590564	-	ENSG00000259093.1	ENST00000554921.1	RP11-1112J20.2	RP11-1112J20.2-001	NA	"hg19_refFlat_PARP1:range=chr1:226549161-2265956305'pad=0,hg19_refFlat_PARP1:range=chr1:226549161-2265956305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50"	NA	inter
CUST_27529_PI429285431	1.0655556	A	1.6559075	A	0.664180881288983	0	lncRNA	29105-1_{1..775}	n324714|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320091|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320091|-0.9240310|-0.1497145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324714|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320091|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320091|-0.9240310|-0.1497145	chr22	 19997208	 19997982	+	NA	NA	NA	NA	C22orf25	NA	chr22:20008631-20009193	inner
CUST_50178_PI429285431	7.7846003	P	7.812484	P	0.980858070730032	0	lncRNA	53904-1_{1..465}	hg19_lincRNAsTranscripts_TCONS_l2_00029916 range=chr9:34665025-34666025 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029916 range=chr9:34665025-34666025 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 34665025	 34665489	-	NA	NA	NA	NA	IL11RA	NA	chr9:34655025-34661884	inter
CUST_11496_PI429285431	7.439314	P	7.635187	P	0.873044441584388	0	lncRNA	13064-1_{1..563}	lnc-P2RY2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-P2RY2-2:2	chr11	 72916066	 72916628	+	lnc-P2RY2-2	lnc-P2RY2-2:2	XLOC_009207	linc-P2RY2-1	NA	NA	NA	inter
CUST_12140_PI429285431	1.3586053	A	2.8972082	A	0.344218633106453	0	lncRNA	13738-1_{1..443}	lnc-SAMD11-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SAMD11-1:2	chr1	   850183	   850625	+	lnc-SAMD11-1	lnc-SAMD11-1:2	XLOC_000011	linc-SAMD11-1	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50"	NA	inter
CUST_26896_PI429285431	0.92038816	A	0.9089389	A	1.00796759598129	0	lncRNA	28414-1_{1..2102}	n323972|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054109|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054109|0.3009970|-0.3158586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323972|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054109|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054109|0.3009970|-0.3158586	chr9	128072220	128074321	-	NA	NA	NA	NA	GAPVD1	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.16;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50chr9:128062220-128088018"	NA	inner
CUST_22370_PI429285431	1.5526621	A	1.044714	A	1.42202625321307	0	lncRNA	23964-1_{1..287}	lnc-GNRHR2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNRHR2-1:5	chr1	145507299	145507585	-	lnc-GNRHR2-1	lnc-GNRHR2-1:5	ENSG00000234222.1	RP11-315I20.1	LIX1L	NA	chr1:145497299-145499091	inter
CUST_50020_PI429285431	1.0639799	A	2.1415164	A	0.473837242300921	0	lncRNA	53755-2_{3001..4851}	hg19_lincRNAsTranscripts_TCONS_l2_00028088 range=chr8:8091508-8102116 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028088 range=chr8:8091508-8102116 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	  8094508	  8096358	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0,hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0 3'pad=0 strand=- repeatMasking=none,-103.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-60.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0,hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0 3'pad=0 strand=- repeatMasking=none,-94.10;hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0,hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0,hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0 3'pad=0 strand=- repeatMasking=none,-94.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70"	NA	inter
CUST_15304_PI429285431	0.9050076	A	0.90085757	A	1.00288072292458	0	lncRNA	16982-1_{1..492}	lnc-KDM4C-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KDM4C-6:1	chr9	  7343265	  7343756	+	lnc-KDM4C-6	lnc-KDM4C-6:1	XLOC_007278	linc-TYRP1-5	NA	NA	NA	inter
CUST_36347_PI429285431	2.171639	A	2.5835936	A	0.751604390810515	0	lncRNA	37575-1_{1..3000}	n344872|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_421|NULL|-1.3011900|-0.2820272	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344872|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_421|NULL|-1.3011900|-0.2820272	chr6	 42727240	 42730239	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-61.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-55.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30"	NA	inter
CUST_13960_PI429285431	4.597515	P	4.749693	P	0.899890894227024	0	lncRNA	15605-1_{1..899}	lnc-ABI3-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABI3-2:3	chr17	 47333205	 47334103	+	lnc-ABI3-2	lnc-ABI3-2:3	XLOC_012230	linc-NGFR-3	NA	NA	NA	inter
CUST_14583_PI429285431	3.185789	P	2.8320835	A	1.27783848904963	0	lncRNA	16250-1_{1..499}	lnc-SEL1L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEL1L-1:2	chr14	 82085504	 82086002	-	lnc-SEL1L-1	lnc-SEL1L-1:2	XLOC_011088	linc-SEL1L-1	NA	NA	NA	inter
CUST_28379_PI429285431	4.648843	P	4.706014	P	0.961146998644145	0	lncRNA	30031-1_{1..727}	n325694|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045275|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045275|-1.0294300|-0.3574904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325694|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045275|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045275|-1.0294300|-0.3574904	chr13	 73891310	 73892036	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23804_PI429285431	3.6302006	P	3.2415655	P	1.30915425759561	0	lncRNA	25369-1_{1..470}	lnc-SNURF-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNURF-1:3	chr15	 25265737	 25266206	+	lnc-SNURF-1	lnc-SNURF-1:3	ENSG00000224078.4	SNHG14	SNRPN	NA	chr15:25255737-25275972	inter
CUST_4324_PI429285431	0.9579596	A	0.89872956	A	1.04190954988501	0	lncRNA	4279-1_{1..342}	"transcript_id ""ENST00000546770.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546770.1"" | genecode_v17"	chr12	 74300720	 74301061	+	ENSG00000257587.1	ENST00000546770.1	RP11-711C17.1	RP11-711C17.1-001	NA	NA	NA	inter
CUST_46409_PI429285431	5.680213	P	5.546031	P	1.09747037779341	0	lncRNA	50623-1_{1..1648}	"gi|310123174|ref|XR_110257.1| PREDICTED: Homo sapiens uncharacterized LOC100507437, transcript variant 1 (LOC100507437), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310123174|ref|XR_110257.1| PREDICTED: Homo sapiens uncharacterized LOC100507437, transcript variant 1 (LOC100507437), misc_RNA"	NA	NA	NA	NA	NA	XR_110257.1	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_SSH1:range=chr12:109185876-1092211815'pad=0,hg19_refFlat_SSH1:range=chr12:109185876-1092211815'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SSH1:range=chr12:109185876-1092512725'pad=0,hg19_refFlat_SSH1:range=chr12:109185876-1092512725'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20"	NA	Unknown
CUST_25559_PI429285431	0.9080392	A	1.6164299	A	0.612002435783161	0	lncRNA	27088-1_{1..338}	lnc-GREM2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GREM2-3:1	chr1	240342866	240343203	-	lnc-GREM2-3	lnc-GREM2-3:1	ENSG00000233735.1	RP11-567G24.3	FMN2	"hg19_refFlat_FMN2:range=chr1:240255410-2406374545'pad=0,hg19_refFlat_FMN2:range=chr1:240255410-2406374545'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80chr1:240332866-240352944"	NA	inner
CUST_27811_PI429285431	0.92355233	A	0.9203063	A	1.00225250963918	0	lncRNA	29397-1_{1..439}	n325039|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078285|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078285|-1.1346300|-0.3680229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325039|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078285|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078285|-1.1346300|-0.3680229	chr20	 22149191	 22149629	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28349_PI429285431	1.6018568	A	0.8933451	A	1.63411747380764	0	lncRNA	29998-1_{1..742}	n325658|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045436|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045436|-1.1088900|-0.3560750	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325658|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045436|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045436|-1.1088900|-0.3560750	chr13	 89943541	 89944282	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50161_PI429285431	3.1533055	P	2.361737	A	1.73095533696972	0	lncRNA	53886-1_{1..1085}	hg19_lincRNAsTranscripts_TCONS_l2_00028612 range=chr9:6668944-6670724 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028612 range=chr9:6668944-6670724 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	  6668944	  6670028	+	NA	NA	NA	NA	KDM4C	"hg19_refFlat_RNF2:range=chr1:185056686-1850694335'pad=0,hg19_refFlat_RNF2:range=chr1:185056686-1850694335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30chr9:6669691-6680724"	NA	inter
CUST_25324_PI429285431	3.253446	P	4.177121	P	0.527164454100534	0	lncRNA	26856-1_{1..311}	lnc-SUMO1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SUMO1-1:1	chr2	203043993	203044303	-	lnc-SUMO1-1	lnc-SUMO1-1:1	ENSG00000231903.1	AC079354.5	NA	"hg19_refFlat_PSMA2:range=chr7:42957173-429717575'pad=0,hg19_refFlat_PSMA2:range=chr7:42957173-429717575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20"	NA	inter
LNCA_21_P0004477	0.9286974	A	1.4803016	A	0.682261068489878	0	lncRNA	TCONS_00010581	NA	NA	NA	NA	XLOC_005110	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005110), lincRNA [TCONS_00010581]"	chr5:180253878-180253819	hs|5q35.3	Agilent_HUMAN_G3V2	TCONS_00010581	TCONS_00010581	chr5	180253819	180253878	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012483	0.92745894	A	0.9106464	A	1.01172173202424	0	lncRNA	TCONS_l2_00019712	NA	NA	NA	NA	XLOC_l2_010511	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010511), lincRNA [TCONS_l2_00019712]"	chr3:197319787-197319728	hs|3q29	Agilent_HUMAN_G3V2	TCONS_l2_00019712	TCONS_l2_00019712	chr3	197319728	197319787	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42777_PI429285431	0.91182315	A	0.904187	A	1.00530700838652	0	lncRNA	45761-1_{1..198}	ENST00000517283 ncrna:snoRNA chromosome:GRCh37:3:183170355:183170552:1 gene:ENSG00000253092 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517283 ncrna:snoRNA chromosome:GRCh37:3:183170355:183170552:1 gene:ENSG00000253092 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	183170355	183170552	+	ENSG00000253092	ENST00000517283	NA	NA	NA	NA	NA	inter
CUST_33900_PI429285431	6.8777018	P	6.9721794	P	0.936611333084627	0	lncRNA	35442-2_{3001..5191}	n340690|AK128210|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3153|NULL|0.7451860|-0.2931761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340690|AK128210|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3153|NULL|0.7451860|-0.2931761	chr5	151124876	151127066	-	NA	NA	NA	NA	ATOX1	NA	chr5:151122383-151138210	inner
CUST_23970_PI429285431	7.836222	P	8.400023	P	0.676517425392638	0	lncRNA	25525-1_{1..507}	lnc-TIMM9-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMM9-2:3	chr14	 58764673	 58765179	-	lnc-TIMM9-2	lnc-TIMM9-2:3	ENSG00000257621.2	RP11-349A22.5	ARID4A	"hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70chr14:58754673-58774850"	NA	inter
CUST_9944_PI429285431	1.320279	A	2.2459514	A	0.526435104043302	0	lncRNA	11467-1_{1..545}	lnc-ROBO2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ROBO2-4:1	chr3	 80838388	 80838932	+	lnc-ROBO2-4	lnc-ROBO2-4:1	XLOC_002716	linc-CADM2-8	NA	NA	NA	inter
CUST_49997_PI429285431	1.082538	A	1.0736264	A	1.0061961677328	0	lncRNA	53734-1_{1..827}	hg19_lincRNAsTranscripts_TCONS_l2_00027543 range=chr8:714227-952750 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027543 range=chr8:714227-952750 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	   714227	   715053	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32246_PI429285431	0.91121095	A	1.9116142	A	0.499860263729584	0	lncRNA	33938-1_{1..1533}	n338821|BC048424|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1244|NULL|-1.0765900|-0.3587815	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338821|BC048424|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1244|NULL|-1.0765900|-0.3587815	chr2	 46795397	 46796929	-	NA	NA	NA	NA	RHOQ	NA	chr2:46785397-46811827	inner
CUST_22913_PI429285431	1.1715906	A	0.9176856	A	1.19243034942054	0	lncRNA	24490-1_{1..566}	lnc-SPI1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPI1-1:1	chr11	 47430503	 47431068	-	lnc-SPI1-1	lnc-SPI1-1:1	ENSG00000255197.1	RP11-750H9.5	SLC39A13	NA	chr11:47430046-47438051	inner
CUST_27756_PI429285431	1.3228397	A	0.88681346	A	1.35287283712391	0	lncRNA	29337-1_{1..450}	n324972|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079614|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079614|-0.8960740|-0.0940245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324972|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079614|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079614|-0.8960740|-0.0940245	chr20	 46045554	 46046003	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50"	NA	inter
CUST_4619_PI429285431	0.9091924	A	1.018776	A	0.926855538345168	0	lncRNA	4565-1_{1..560}	"transcript_id ""ENST00000599175.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599175.1"" | genecode_v17"	chr13	 47029504	 47030063	-	ENSG00000231817.2	ENST00000599175.1	RP11-189B4.6	RP11-189B4.6-007	LOC731932	"hg19_refFlat_OR7A17:range=chr19:14991238-149921675'pad=0,hg19_refFlat_OR7A17:range=chr19:14991238-149921675'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_OR7C1:range=chr19:14909986-149109485'pad=0,hg19_refFlat_OR7C1:range=chr19:14909986-149109485'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_OR7A10:range=chr19:14951760-149526895'pad=0,hg19_refFlat_OR7A10:range=chr19:14951760-149526895'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_OR1E1:range=chr17:3300760-33017045'pad=0,hg19_refFlat_OR1E1:range=chr17:3300760-33017045'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_OR7C2:range=chr19:15052301-150532605'pad=0,hg19_refFlat_OR7C2:range=chr19:15052301-150532605'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_OR7G1:range=chr19:9225504-92264395'pad=0,hg19_refFlat_OR7G1:range=chr19:9225504-92264395'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90;hg19_refFlat_OR1J2:range=chr9:125273081-1252740225'pad=0,hg19_refFlat_OR1J2:range=chr9:125273081-1252740225'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_OR7A5:range=chr19:14938094-149390535'pad=0,hg19_refFlat_OR7A5:range=chr19:14938094-149390535'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_OR1K1:range=chr9:125562402-1255633525'pad=0,hg19_refFlat_OR1K1:range=chr9:125562402-1255633525'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90chr13:47019504-47035198"	NA	inter
CUST_22076_PI429285431	2.3207738	A	1.7024331	A	1.53510857713953	0	lncRNA	23682-1_{1..603}	lnc-KCTD10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCTD10-1:1	chr12	109884872	109885474	-	lnc-KCTD10-1	lnc-KCTD10-1:1	ENSG00000255655.1	RP11-256L11.3	MYO1H	"hg19_refFlat_MYO1H:range=chr12:109826524-1098849875'pad=0,hg19_refFlat_MYO1H:range=chr12:109826524-1098849875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60chr12:109874872-109886176"	NA	inner
CUST_5035_PI429285431	2.156933	A	2.8925939	A	0.600542852475666	0	lncRNA	4975-1_{1..551}	"transcript_id ""ENST00000556136.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556136.1"" | genecode_v17"	chr14	101542927	101543477	-	ENSG00000230805.2	ENST00000556136.1	AL132709.1	AL132709.1-004	NA	NA	NA	inter
CUST_47062_PI429285431	6.872328	P	7.001625	P	0.914276852783359	0	lncRNA	51149-1_{1..1449}	"gi|377652336|ref|NR_046366.1| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|377652336|ref|NR_046366.1| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_046366.1	NA	NA	NA	NA	NA	Unknown
CUST_37349_PI429285431	0.92015517	A	0.9115198	A	1.00600353176139	0	lncRNA	38453-1_{1..2902}	n345792|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1341|NULL|-1.3190800|-0.3481756	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345792|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1341|NULL|-1.3190800|-0.3481756	chr21	 24734065	 24736966	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32215_PI429285431	0.9083149	A	1.0172049	A	0.927301246927039	0	lncRNA	33908-1_{1..1015}	n338789|BC036310|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1211|NULL|1.7901700|-0.3168728	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n338789|BC036310|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1211|NULL|1.7901700|-0.3168728	chr13	 80446718	 80447732	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001223	0.9215762	A	0.9058929	A	1.01093013739902	0	lncRNA	ENST00000413159	NA	NA	NA	NA	XLOC_001210	NA	ENST00000413159	NA	NA	"BROAD Institute lincRNA (XLOC_001210), lincRNA [TCONS_00000735]"	chr1:220533147-220533088	hs|1q41	Agilent_HUMAN_G3V2	ENST00000413159	ENST00000413159	chr1	220533088	220533147	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52044_PI429285431	15.704403	P	15.640599	P	1.04521809052428	0	lncRNA	55574-1_{1..454}	hg19_lincRNAsTranscripts_TCONS_l2_00017196 range=chr21:30369929-30370929 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017196 range=chr21:30369929-30370929 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 30369929	 30370382	-	NA	NA	NA	NA	LTN1	NA	chr21:30359929-30365277	inter
CUST_10538_PI429285431	3.5326138	P	3.522086	P	1.00732400517276	0	lncRNA	12067-1_{1..877}	lnc-AP000790.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP000790.1-1:1	chr11	 59737522	 59738398	+	lnc-AP000790.1-1	lnc-AP000790.1-1:1	XLOC_009140	linc-PLAC1L-1	NA	NA	NA	inter
LNCA_21_P0014134	9.227823	P	8.425134	P	1.74434934376075	0	lncRNA	ENST00000382674	XR_108541	XR_108541	NA	Hs.666267	EVC	Ellis van Creveld syndrome	ENST00000382674	THC2535975	GO:0045880|GO:0005929|GO:0060170|GO:0005737|GO:0001501|GO:0007517|GO:0003416|GO:0005886|GO:0051216|GO:0016021|GO:0005932|GO:0005856	"PREDICTED: Homo sapiens hypothetical LOC100507314 (LOC100507314), miscRNA [XR_108541]"	chr4:5830668-5830727	hs|4p16.2	Agilent_HUMAN_G3V2	ENST00000382674	ENST00000382674	chr4	  5830668	  5830727	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013416	0.9212642	A	0.9700657	A	0.966739101272511	0	lncRNA	ENST00000418442	NA	NA	NA	NA	XLOC_l2_013734	NA	ENST00000418442	THC2659460	NA	"BROAD Institute lincRNA (XLOC_l2_013734), lincRNA [TCONS_l2_00027289]"	chr7:20046905-20046846	hs|7p21.1	Agilent_HUMAN_G3V2	ENST00000418442	ENST00000418442	chr7	 20046846	 20046905	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35414_PI429285431	1.2254703	A	0.9088966	A	1.24536936869044	0	lncRNA	36824-1_{1..1653}	n342476|AF130054|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4970|NULL|0.1815020|-0.3153047	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342476|AF130054|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4970|NULL|0.1815020|-0.3153047	chr2	238672594	238674246	-	NA	NA	NA	NA	LRRFIP1	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_LRRFIP1:range=chr2:238601099-2386727835'pad=0,hg19_refFlat_LRRFIP1:range=chr2:238601099-2386727835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40chr2:238662594-238684103"	NA	inner
CUST_30322_PI429285431	0.92967916	A	0.9322294	A	0.998233869780974	0	lncRNA	32098-1_{1..217}	n335235|AY543657|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255353|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255353|-1.0550500|-0.1235644	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335235|AY543657|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255353|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255353|-1.0550500|-0.1235644	chr4	 76932357	 76932573	+	NA	NA	NA	NA	ART3	NA	chr4:76932337-77013001	inner
LNCA_21_P0007799	5.204171	P	4.897314	P	1.23700986013504	0	lncRNA	TCONS_00020993	NA	NA	NA	NA	XLOC_010257	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010257), lincRNA [TCONS_00020993]"	chr12:128602857-128602798	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020993	TCONS_00020993	chr12	128602798	128602857	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47382_PI429285431	4.7959647	P	5.1596727	P	0.777164550176418	0	lncRNA	51430-1_{1..840}	"gi|397139745|ref|XR_158951.1| PREDICTED: Homo sapiens uncharacterized LOC100996609 (LOC100996609), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139745|ref|XR_158951.1| PREDICTED: Homo sapiens uncharacterized LOC100996609 (LOC100996609), misc_RNA"	Chr21	 37377636	 37378475	+	100996609	XR_158951.2	NA	NA	NA	NA	NA	inter
CUST_10740_PI429285431	5.6219416	P	5.5697837	P	1.0368145720289	0	lncRNA	12276-1_{1..1260}	lnc-NLGN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NLGN2-1:1	chr17	  7310934	  7312193	+	lnc-NLGN2-1	lnc-NLGN2-1:1	XLOC_012097	linc-NLGN2	C17orf61	NA	chr17:7306293-7307450	inter
CUST_30903_PI429285431	5.253565	P	4.454304	P	1.74020950070306	0	lncRNA	32691-1_{1..398}	n336936|BC090919|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000334281|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000334281|1.7843300|-0.1133043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336936|BC090919|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000334281|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000334281|1.7843300|-0.1133043	chr10	 12077096	 12077493	-	NA	NA	NA	NA	UPF2	NA	chr10:12067096-12085023	inner
CUST_1947_PI429285431	0.9174503	A	1.1308815	A	0.862483522571942	0	lncRNA	1940-1_{1..552}	"transcript_id ""ENST00000504799.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504799.1"" | genecode_v17"	chr4	153067537	153068088	-	ENSG00000250706.1	ENST00000504799.1	RP11-18H21.2	RP11-18H21.2-001	NA	NA	NA	inter
CUST_17595_PI429285431	0.90603435	A	0.90503585	A	1.00069234702142	0	lncRNA	19321-1_{1..420}	lnc-MIS12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-MIS12-1:1	chr17	  5373412	  5373831	+	lnc-MIS12-1	lnc-MIS12-1:1	XLOC_012091	linc-MIS12	DHX33	NA	chr17:5363412-5372380	inter
CUST_30872_PI429285431	3.762508	P	2.5618038	A	2.29851837578186	0	lncRNA	32660-1_{1..315}	n336880|AY702947|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332193|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332193|1.2344500|-0.2088817	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336880|AY702947|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332193|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332193|1.2344500|-0.2088817	chr1	 40307386	 40307700	-	NA	NA	NA	NA	TRIT1	NA	chr1:40306703-40349177	inner
CUST_34972_PI429285431	4.5336485	P	3.9140503	P	1.53644721110226	0	lncRNA	36389-1_{1..1992}	n341894|BC035337|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4374|NULL|-1.0374400|-0.2792126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341894|BC035337|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4374|NULL|-1.0374400|-0.2792126	chr6	 56953487	 56955478	-	NA	NA	NA	NA	ZNF451	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30chr6:56954828-56965427"	NA	inner
LNCA_21_P0010078	0.9253323	A	0.9131501	A	1.00847980919596	0	lncRNA	THC2713069	NA	NA	NA	NA	XLOC_013448	NA	NA	THC2713069	NA	"BROAD Institute lincRNA (XLOC_013448), lincRNA [TCONS_00028492]"	chr20:005483218-005483277	hs|20p12.3	Agilent_HUMAN_G3V2	THC2713069	THC2713069	chr20	  5483218	  5483277	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24859_PI429285431	5.4715643	P	5.8212214	P	0.784770600140181	0	lncRNA	26399-1_{1..703}	lnc-GDPD4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GDPD4-1:3	chr11	 76835302	 76836004	-	lnc-GDPD4-1	lnc-GDPD4-1:3	ENSG00000254808.1	RP11-689N19.3	CAPN5	"hg19_refFlat_CAPN5:range=chr11:76795933-768349165'pad=0,hg19_refFlat_CAPN5:range=chr11:76795933-768349165'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.40chr11:76825302-76837201"	NA	inner
CUST_23743_PI429285431	0.92420816	A	0.990313	A	0.955213518923234	0	lncRNA	25306-1_{1..696}	lnc-YLPM1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YLPM1-1:2	chr14	 75321920	 75322615	+	lnc-YLPM1-1	lnc-YLPM1-1:2	ENSG00000259606.1	RP11-316E14.6	PROX2	"hg19_refFlat_PROX2:range=chr14:75321835-753305375'pad=0,hg19_refFlat_PROX2:range=chr14:75321835-753305375'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80chr14:75321835-75330537"	NA	inner
CUST_22968_PI429285431	2.1680195	A	2.6368706	A	0.722539768164996	0	lncRNA	24542-1_{1..480}	lnc-SMOX-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMOX-1:1	chr20	  4176173	  4176652	+	lnc-SMOX-1	lnc-SMOX-1:1	ENSG00000230176.1	RP4-779E11.3	SMOX	NA	chr20:4166173-4168369	inter
LNCA_21_P0003921	0.9294631	A	0.9181867	A	1.00784683113786	0	lncRNA	ENST00000503757	NA	BC034630	NA	NA	XLOC_004267	NA	ENST00000503757	THC2613162	NA	"BROAD Institute lincRNA (XLOC_004267), lincRNA [TCONS_00009232]"	chr5:4774885-4774944	hs|5p15.32	Agilent_HUMAN_G3V2	ENST00000503757	ENST00000503757	chr5	  4774885	  4774944	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6260_PI429285431	1.7623473	A	1.3628104	A	1.31908442137843	0	lncRNA	6185-1_{1..211}	"transcript_id ""ENST00000579775.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579775.1"" | genecode_v17"	chr18	 73720073	 73720283	-	ENSG00000264108.1	ENST00000579775.1	RP11-357H3.1	RP11-357H3.1-001	NA	NA	NA	inter
CUST_36831_PI429285431	0.9037273	A	1.4620953	A	0.679069904277441	0	lncRNA	37997-1_{1..214}	n345305|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_854|NULL|-1.4147100|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345305|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_854|NULL|-1.4147100|-1.0000000	chr15	 59678952	 59679165	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8509_PI429285431	5.2696285	P	5.25061	P	1.01326989346142	0	lncRNA	10072-1_{1..458}	lnc-RP11-167N24.6.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-167N24.6.1-4:1	chr12	 95830530	 95830987	-	lnc-RP11-167N24.6.1-4	lnc-RP11-167N24.6.1-4:1	ENSG00000257943	RP11-167N24.3	NA	NA	NA	inter
CUST_20413_PI429285431	0.90199244	A	0.8983979	A	1.00249465174476	0	lncRNA	22055-1_{1..2815}	lnc-FARSB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FARSB-1:1	chr2	223431624	223434438	-	lnc-FARSB-1	lnc-FARSB-1:1	ENSG00000261428.1	RP11-16P6.1	SGPP2	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40chr2:223421624-223423617"	NA	inter
LNCA_21_P0006492	4.3532495	P	4.0570416	P	1.22791261988109	0	lncRNA	TCONS_00017157	NA	NA	NA	NA	XLOC_007963	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007963), lincRNA [TCONS_00017157]"	chrX:43297748-43297807	hs|Xp11.3	Agilent_HUMAN_G3V2	TCONS_00017157	TCONS_00017157	chrX	 43297748	 43297807	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44378_PI429285431	1.2673643	A	0.9951381	A	1.20766992708089	0	lncRNA	48999-1_{1..341}	"gi|372624399|ref|NR_033737.2| Homo sapiens transmembrane protease, serine 11G, pseudogene (TMPRSS11GP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372624399|ref|NR_033737.2| Homo sapiens transmembrane protease, serine 11G, pseudogene (TMPRSS11GP), non-coding RNA"	Chr4	 68857530	 68857870	-	644759	NR_033737.2	NA	NA	NA	NA	NA	inter
CUST_31973_PI429285431	6.743287	P	6.6060934	P	1.09976372032923	0	lncRNA	33696-1_{1..671}	n338531|BC071809|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|931|NULL|-0.4255740|-0.1081832	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338531|BC071809|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|931|NULL|-0.4255740|-0.1081832	chr19	 36505410	 36506080	+	NA	NA	NA	NA	WDR62	"hg19_refFlat_CLIP3:range=chr19:36507060-365232595'pad=0,hg19_refFlat_CLIP3:range=chr19:36507060-365232595'pad=0 3'pad=0 strand=- repeatMasking=none,-97.20chr19:36545783-36546874"	NA	inner
CUST_7355_PI429285431	2.0708442	A	2.478983	A	0.753594948804079	0	lncRNA	9001-1_{1..2849}	lnc-LSMD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LSMD1-1:1	chr17	  7775934	  7778782	-	lnc-LSMD1-1	lnc-LSMD1-1:1	ENSG00000248291	ENST00000507426	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50"	NA	inter
CUST_13784_PI429285431	1.6249983	A	1.6554046	A	0.979144506497304	0	lncRNA	15426-1_{1..433}	lnc-CRABP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRABP2-1:2	chr1	156682670	156683102	-	lnc-CRABP2-1	lnc-CRABP2-1:2	XLOC_001048	linc-CRABP2	ISG20L2	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00chr1:156692413-156692966"	NA	inter
CUST_12258_PI429285431	6.129987	P	6.2487116	P	0.921001492918009	0	lncRNA	13864-1_{1..857}	lnc-UCHL3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UCHL3-5:1	chr13	 75146348	 75147204	+	lnc-UCHL3-5	lnc-UCHL3-5:1	XLOC_010430	linc-UCHL3-3	NA	NA	NA	inter
CUST_41309_PI429285431	18.82134	P	18.82134	P	1	0	lncRNA	42326-1_{1..64}	ENST00000582110 ncrna:miRNA chromosome:GRCh37:21:35677430:35677493:1 gene:ENSG00000266007 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582110 ncrna:miRNA chromosome:GRCh37:21:35677430:35677493:1 gene:ENSG00000266007 gene_biotype:miRNA transcript_biotype:miRNA	chr21	 35677430	 35677493	+	ENSG00000266007	ENST00000582110	NA	NA	NA	NA	NA	inter
LNCA_21_P0011320	1.9897873	A	2.6901512	A	0.615416956622568	0	lncRNA	TCONS_l2_00008608	NA	NA	NA	NA	XLOC_l2_004640	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004640), lincRNA [TCONS_l2_00008608]"	chr15:42930560-42930619	hs|15q15.2	Agilent_HUMAN_G3V2	TCONS_l2_00008608	TCONS_l2_00008608	chr15	 42930560	 42930619	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20318_PI429285431	0.928264	A	0.9280825	A	1.0001258141272	0	lncRNA	21961-1_{1..1676}	lnc-RIOK1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RIOK1-2:1	chr6	  7184741	  7186416	+	lnc-RIOK1-2	lnc-RIOK1-2:1	ENSG00000225092.2	RP11-405O10.2	RREB1	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70chr6:7174741-7195520"	NA	inner
LNCA_21_P0013720	0.9903284	A	0.93068284	A	1.04220968026321	0	lncRNA	ENST00000424177	NA	NA	NA	NA	XLOC_l2_015143	NA	ENST00000424177	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015143), lincRNA [TCONS_l2_00029911]"	chr9:32840706-32840647	hs|9p21.1	Agilent_HUMAN_G3V2	ENST00000424177	ENST00000424177	chr9	 32840647	 32840706	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6140_PI429285431	3.55797	P	3.7293491	P	0.887993425288382	0	lncRNA	6066-1_{1..557}	"transcript_id ""ENST00000581532.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581532.1"" | genecode_v17"	chr18	 27108268	 27108824	+	ENSG00000264587.1	ENST00000581532.1	RP11-784B15.1	RP11-784B15.1-002	NA	NA	NA	inter
CUST_28925_PI429285431	1.4265019	A	2.6597981	A	0.425344528220056	0	lncRNA	30642-1_{1..810}	n326350|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000081455|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000081455|-1.0224100|-0.3732061	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326350|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000081455|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000081455|-1.0224100|-0.3732061	chr1	164623587	164624396	-	NA	NA	NA	NA	PBX1	NA	chr1:164613587-164698493	inner
CUST_8742_PI429285431	0.92151237	A	0.92832035	A	0.995292184524833	0	lncRNA	10285-1_{1..566}	lnc-SSR3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SSR3-3:1	chr3	156534676	156535241	-	lnc-SSR3-3	lnc-SSR3-3:1	ENSG00000240875	RP11-392A22.2	LEKR1	NA	chr3:156544096-156544851	inter
CUST_51358_PI429285431	4.0148773	P	4.7468686	P	0.602072321329929	0	lncRNA	54954-1_{1..735}	hg19_lincRNAsTranscripts_TCONS_l2_00009243 range=chr15:84873076-84898864 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009243 range=chr15:84873076-84898864 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 84873076	 84873810	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006892	2.21276	A	3.0610332	A	0.555449170174896	0	lncRNA	TCONS_00018278	NA	NA	NA	NA	XLOC_008554	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008554), lincRNA [TCONS_00018278]"	chr10:91613712-91674399	hs|10q23.31	Agilent_HUMAN_G3V2	TCONS_00018278	TCONS_00018278	chr10	 91613712	 91674399	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45245_PI429285431	1.2335677	A	0.91251653	A	1.24924043335358	0	lncRNA	49698-2_{3001..5129}	"gi|363498931|ref|NR_045639.1| Homo sapiens ubiquinol-cytochrome c reductase binding protein (UQCRB), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|363498931|ref|NR_045639.1| Homo sapiens ubiquinol-cytochrome c reductase binding protein (UQCRB), transcript variant 4, non-coding RNA"	Chr8	 97241904	 97244032	-	7381	NR_045639.1	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-25.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10"	NA	inter
CUST_5095_PI429285431	6.2778397	P	6.377206	P	0.933442913844953	0	lncRNA	5035-1_{1..545}	"transcript_id ""ENST00000565129.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565129.1"" | genecode_v17"	chr15	 22433890	 22434434	-	ENSG00000260739.1	ENST00000565129.1	RP11-2F9.4	RP11-2F9.4-001	NA	NA	NA	inter
CUST_51890_PI429285431	1.9117193	A	0.90939385	A	2.00322635777287	0	lncRNA	55439-1_{1..255}	hg19_lincRNAsTranscripts_TCONS_l2_00012705 range=chr19:55209054-55221353 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012705 range=chr19:55209054-55221353 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 55209054	 55209308	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007130	2.367206	A	3.5209875	P	0.449445627886502	0	lncRNA	BC034795	NA	BC034795	NA	NA	XLOC_009269	NA	ENST00000526101	THC2631765	NA	"BROAD Institute lincRNA (XLOC_009269), lincRNA [TCONS_00019108]"	chr11:106133879-106133938	hs|11q22.3	Agilent_HUMAN_G3V2	BC034795	BC034795	chr11	106133879	106133938	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13374_PI429285431	4.329901	P	4.376497	P	0.96821812046939	0	lncRNA	15009-1_{1..484}	lnc-C15orf2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-4:1	chr15	 24656595	 24657078	+	lnc-C15orf2-4	lnc-C15orf2-4:1	XLOC_011180	linc-C15orf2-2	NA	NA	NA	inter
CUST_13551_PI429285431	0.98711777	A	0.9822581	A	1.00337414621789	0	lncRNA	15192-1_{1..579}	lnc-C15orf59-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf59-1:1	chr15	 74102541	 74103119	-	lnc-C15orf59-1	lnc-C15orf59-1:1	XLOC_011525	linc-C15orf59-1	NA	NA	NA	inter
CUST_29124_PI429285431	1.1588311	A	0.9153887	A	1.18381398065905	0	lncRNA	30862-1_{1..363}	n326627|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021645|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021645|-1.1977600|-0.4635325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326627|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021645|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021645|-1.1977600|-0.4635325	chr1	 47416427	 47416789	-	NA	NA	NA	NA	CYP4A11	NA	chr1:47406427-47407156	inter
CUST_38844_PI429285431	7.2624135	P	7.1654897	P	1.0694905982367	0	lncRNA	39835-1_{1..1357}	n384662|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jxp.3||1.9181800|-0.2245297	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384662|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jxp.3||1.9181800|-0.2245297	chr5	 69140556	 69141912	+	NA	NA	NA	NA	SERF1B	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.85;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60chr5:69321078-69338935"	NA	inner
CUST_24938_PI429285431	9.024345	P	9.37758	P	0.782826771540754	0	lncRNA	26478-1_{1..427}	lnc-PXMP4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PXMP4-2:2	chr20	 32398846	 32399272	-	lnc-PXMP4-2	lnc-PXMP4-2:2	ENSG00000230753.1	RP4-553F4.6	CHMP4B	NA	chr20:32399110-32408880	inter
CUST_23167_PI429285431	0.9201357	A	0.914353	A	1.00401630602762	0	lncRNA	24738-1_{1..638}	lnc-CRLF3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CRLF3-2:1	chr17	 29189714	 29190351	-	lnc-CRLF3-2	lnc-CRLF3-2:1	ENSG00000265334.1	CTD-2349P21.11	ATAD5	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_ATAD5:range=chr17:29159366-292219315'pad=0,hg19_refFlat_ATAD5:range=chr17:29159366-292219315'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50chr17:29179714-29200046"	NA	inner
CUST_34986_PI429285431	5.733201	P	5.8210626	P	0.940916366768467	0	lncRNA	36402-1_{1..3000}	n341914|BX537514|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4395|NULL|-0.6981510|-0.3575935	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341914|BX537514|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4395|NULL|-0.6981510|-0.3575935	chr12	 49082246	 49085245	-	NA	NA	NA	NA	C12orf41	NA	chr12:49072246-49076035	inner
CUST_42563_PI429285431	8.353983	P	8.437598	P	0.943690051993897	0	lncRNA	45388-1_{1..136}	ENST00000363922 ncrna:snoRNA chromosome:GRCh37:21:33749496:33749631:-1 gene:ENSG00000200792 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363922 ncrna:snoRNA chromosome:GRCh37:21:33749496:33749631:-1 gene:ENSG00000200792 gene_biotype:snoRNA transcript_biotype:snoRNA	chr21	 33749496	 33749631	-	ENSG00000200792	ENST00000363922	NA	NA	URB1	NA	chr21:33739496-33759631	inner
CUST_44763_PI429285431	0.91410726	A	0.90564203	A	1.00588489868667	0	lncRNA	49307-1_{1..3000}	"gi|365733562|ref|NR_045673.1| Homo sapiens chloride intracellular channel 5 (CLIC5), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|365733562|ref|NR_045673.1| Homo sapiens chloride intracellular channel 5 (CLIC5), transcript variant 5, non-coding RNA"	Chr6	 45866188	 45869187	-	53405	NR_045673.1	NA	NA	NA	NA	NA	inter
CUST_16500_PI429285431	0.9925612	A	0.9276891	A	1.0459922047865	0	lncRNA	18197-1_{1..762}	lnc-ZMYM2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZMYM2-3:1	chr13	 20710819	 20711580	+	lnc-ZMYM2-3	lnc-ZMYM2-3:1	XLOC_010294	linc-IFT88-2	GJA3	NA	chr13:20712394-20721260	inter
LNCA_33_P3339148	2.1904879	A	0.96304667	A	2.34151329562751	0	lncRNA	XR_109873	XR_109873	XR_109873	   645010	Hs.538222	FLJ16126	uncharacterized LOC645010	NA	THC2487037	NA	"PREDICTED: Homo sapiens hypothetical LOC645010 (FLJ16126), miscRNA [XR_109873]"	chr1:9888019-9887960	hs|1p36.22	Agilent_HUMAN_G3V2	XR_109873	XR_109873	chr1	  9887960	  9888019	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2221_PI429285431	0.9953519	A	0.9121411	A	1.05937311412927	0	lncRNA	2213-1_{1..424}	"transcript_id ""ENST00000511793.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511793.1"" | genecode_v17"	chr5	 84715846	 84716269	-	ENSG00000248667.1	ENST00000511793.1	CTD-2331D11.2	CTD-2331D11.2-001	NA	NA	NA	inter
CUST_21602_PI429285431	0.9074597	A	0.9117875	A	0.997004692543358	0	lncRNA	23215-1_{1..457}	lnc-APC-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-APC-5:1	chr5	111510908	111511364	+	lnc-APC-5	lnc-APC-5:1	ENSG00000250882.1	CTC-459M5.1	EPB41L4A	NA	chr5:111500908-111521245	inner
CUST_1846_PI429285431	0.91955864	A	0.9143822	A	1.0035944794938	0	lncRNA	1836-1_{1..583}	"transcript_id ""ENST00000511219.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511219.1"" | genecode_v17"	chr4	112748037	112748619	-	ENSG00000249815.1	ENST00000511219.1	RP11-269F21.3	RP11-269F21.3-001	NA	NA	NA	inter
CUST_24607_PI429285431	0.89659166	A	1.4707265	A	0.67168893121547	0	lncRNA	26156-1_{1..686}	lnc-CPPED1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPPED1-5:1	chr16	 13426377	 13427062	-	lnc-CPPED1-5	lnc-CPPED1-5:1	ENSG00000262011.1	AC003009.1	NA	NA	NA	inter
CUST_17012_PI429285431	6.9318743	P	7.515093	P	0.667472960892223	0	lncRNA	18723-1_{1..1951}	lnc-C20orf78-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf78-1:2	chr20	 18774812	 18776762	-	lnc-C20orf78-1	lnc-C20orf78-1:2	XLOC_013669	linc-RBBP9-5	NA	NA	NA	inter
CUST_49686_PI429285431	2.6054466	A	3.230725	P	0.648294662422953	0	lncRNA	53463-1_{1..1348}	hg19_lincRNAsTranscripts_TCONS_l2_00025621 range=chr7:5862845-5894605 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025621 range=chr7:5862845-5894605 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  5862845	  5864192	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39698_PI429285431	0.9131956	A	1.2033715	A	0.817802342264457	0	lncRNA	40635-3_{6001..6257}	n405483|NR_002328|lncRNA|Homosapiens||RefGeneNoncode|NR_002328||1.9532700|-0.3021892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405483|NR_002328|lncRNA|Homosapiens||RefGeneNoncode|NR_002328||1.9532700|-0.3021892	chr1	145515819	145516075	-	NA	NA	NA	NA	ITGA10	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70chr1:145524990-145526076"	NA	inter
CUST_9992_PI429285431	1.1401334	A	0.97047615	A	1.1247912293216	0	lncRNA	11518-1_{1..695}	lnc-RP11-736N17.6.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-736N17.6.1-2:1	chr14	103766042	103766736	-	lnc-RP11-736N17.6.1-2	lnc-RP11-736N17.6.1-2:1	XLOC_011148	linc-CDC42BPB-2	NA	NA	NA	inter
CUST_5021_PI429285431	4.5711355	P	3.9712386	P	1.51560825200879	0	lncRNA	4961-1_{1..541}	"transcript_id ""ENST00000554485.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554485.1"" | genecode_v17"	chr14	101405265	101405805	+	ENSG00000225746.4	ENST00000554485.1	AL132709.5	AL132709.5-009	NA	NA	NA	inter
CUST_2865_PI429285431	0.91061425	A	0.9091393	A	1.00102288021947	0	lncRNA	2846-1_{1..510}	"transcript_id ""ENST00000444745.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444745.1"" | genecode_v17"	chr7	 67485240	 67485749	+	ENSG00000225209.1	ENST00000444745.1	RP11-358M3.1	RP11-358M3.1-001	NA	NA	NA	inter
CUST_1043_PI429285431	1.695652	A	2.4530444	A	0.591564588775952	0	lncRNA	1033-1_{1..778}	"transcript_id ""ENST00000414886.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414886.1"" | genecode_v17"	chr2	118889704	118890481	-	ENSG00000226856.1	ENST00000414886.1	AC093901.1	AC093901.1-001	NA	NA	NA	inter
CUST_4483_PI429285431	3.8559134	P	4.2042375	P	0.785496035945277	0	lncRNA	4432-1_{1..676}	"transcript_id ""ENST00000541359.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000541359.1"" | genecode_v17"	chr12	127211108	127211783	+	ENSG00000189238.4	ENST00000541359.1	RP11-173C20.1	RP11-173C20.1-005	NA	NA	NA	inter
CUST_24677_PI429285431	3.956926	P	4.1028323	P	0.903811425490669	0	lncRNA	26224-1_{1..869}	lnc-PDE4DIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE4DIP-1:1	chr1	144835453	144836321	-	lnc-PDE4DIP-1	lnc-PDE4DIP-1:1	ENSG00000254539.1	RP4-791M13.3	NBPF9	NA	chr1:144825453-144828810	inter
CUST_1811_PI429285431	3.6468544	P	3.799066	P	0.899869936241384	0	lncRNA	1798-1_{1..741}	"transcript_id ""ENST00000506460.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506460.1"" | genecode_v17"	chr4	 80584915	 80585655	+	ENSG00000248408.1	ENST00000506460.1	RP11-452C8.1	RP11-452C8.1-001	NA	NA	NA	inter
CUST_29121_PI429285431	5.857652	P	6.3197165	P	0.725946683607068	0	lncRNA	30856-1_{1..1158}	n326621|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021842|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021842|-1.0139400|-0.2601517	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326621|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021842|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021842|-1.0139400|-0.2601517	chr1	 48003894	 48005051	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18625_PI429285431	3.5072262	P	6.127316	P	0.162657607054712	0	lncRNA	20330-1_{1..1122}	lnc-HOXD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-HOXD3-1:1	chr2	177043153	177044274	+	lnc-HOXD3-1	lnc-HOXD3-1:1	ENSG00000226363	AC009336.24	HOXD3	NA	chr2:177033153-177037826	inter
CUST_44388_PI429285431	2.2223969	A	2.691245	A	0.722541270645767	0	lncRNA	49007-1_{1..1902}	"gi|379991118|ref|NR_046429.1| Homo sapiens chromosome 4 open reading frame 26 (C4orf26), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379991118|ref|NR_046429.1| Homo sapiens chromosome 4 open reading frame 26 (C4orf26), transcript variant 4, non-coding RNA"	Chr4	 76481258	 76483159	+	152816	NR_046429.1	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60"	NA	inter
CUST_31651_PI429285431	4.792872	P	2.5280216	A	4.80604581022112	0	lncRNA	33402-1_{1..1299}	n338173|AK027101|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|562|NULL|-0.8623770|-0.2929308	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338173|AK027101|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|562|NULL|-0.8623770|-0.2929308	chr22	 46638411	 46639709	+	NA	NA	NA	NA	PPARA	NA	chr22:46628411-46639653	inner
CUST_46728_PI429285431	9.909306	P	10.018752	P	0.926943943309923	0	lncRNA	50880-2_{3001..3542}	"gi|378744179|ref|NR_046388.1| Homo sapiens proline, glutamate and leucine rich protein 1 (PELP1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378744179|ref|NR_046388.1| Homo sapiens proline, glutamate and leucine rich protein 1 (PELP1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_046388.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011482	2.2337306	A	2.2570493	A	0.983966633883944	0	lncRNA	TCONS_l2_00010170	NA	NA	NA	NA	XLOC_l2_005490	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005490), lincRNA [TCONS_l2_00010170]"	chr16:53399767-53399708	hs|16q12.2	Agilent_HUMAN_G3V2	TCONS_l2_00010170	TCONS_l2_00010170	chr16	 53399708	 53399767	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48418_PI429285431	3.9115896	P	2.9055338	A	2.00841276558675	0	lncRNA	52270-1_{1..406}	hg19_lincRNAsTranscripts_TCONS_l2_00000577 range=chr1:148882245-148890225 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000577 range=chr1:148882245-148890225 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	148882245	148882650	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13460_PI429285431	0.9269244	A	0.9153604	A	1.00804776455323	0	lncRNA	15098-1_{1..462}	lnc-AMY1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AMY1B-1:1	chr1	104068018	104068479	-	lnc-AMY1B-1	lnc-AMY1B-1:1	XLOC_000945	linc-COL11A1	RNPC3	NA	chr1:104068578-104078139	inter
CUST_49082_PI429285431	1.7588501	A	2.178546	A	0.747582187612878	0	lncRNA	52906-1_{1..795}	hg19_lincRNAsTranscripts_TCONS_l2_00021053 range=chr4:9146461-9153487 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021053 range=chr4:9146461-9153487 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  9146461	  9147255	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31059_PI429285431	0.9221993	A	0.9217866	A	1.00028610276101	0	lncRNA	32849-1_{1..327}	n337284|BC128169|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389697|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389697|-1.0810100|-0.3115166	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337284|BC128169|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389697|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389697|-1.0810100|-0.3115166	chr17	 67209846	 67210172	+	NA	NA	NA	NA	ABCA10	NA	chr17:67199846-67220173	inner
CUST_47963_PI429285431	0.9119778	A	0.92999876	A	0.987586513323905	0	lncRNA	51854-1_{1..1002}	"gi|410172634|ref|XR_171895.1| PREDICTED: Homo sapiens glycine N-acyltransferase-like protein 1-like (LOC101060277), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172634|ref|XR_171895.1| PREDICTED: Homo sapiens glycine N-acyltransferase-like protein 1-like (LOC101060277), misc_RNA"	NA	NA	NA	NA	NA	XR_171895.1	NA	NA	NA	NA	NA	Unknown
CUST_6876_PI429285431	0.8957144	A	0.8911475	A	1.00317054945215	0	lncRNA	6827-1_{1..2033}	"transcript_id ""ENST00000412102.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000412102.1"" | genecode_v17"	chr21	 43131680	 43133712	-	ENSG00000236384.3	ENST00000412102.1	LINC00479	LINC00479-001	NA	NA	NA	inter
CUST_12831_PI429285431	7.894166	P	8.197488	P	0.810384227294418	0	lncRNA	14458-1_{1..1263}	lnc-C14orf79-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf79-2:6	chr14	105564810	105566072	+	lnc-C14orf79-2	lnc-C14orf79-2:6	XLOC_010952	linc-BTBD6-1	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00"	NA	inter
CUST_14718_PI429285431	1.5055001	A	1.339478	A	1.12196066721244	0	lncRNA	16382-1_{1..884}	lnc-CCDC37-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CCDC37-2:4	chr3	126009796	126010679	+	lnc-CCDC37-2	lnc-CCDC37-2:4	XLOC_002797	linc-CCDC37-3	LOC644662	NA	chr3:125999796-126010368	inter
LNCA_21_P0009905	0.9544946	A	1.3089545	A	0.782162405519698	0	lncRNA	ENST00000451572	NA	NA	NA	NA	XLOC_013775	NA	ENST00000451572	NA	NA	"BROAD Institute lincRNA (XLOC_013775), lincRNA [TCONS_00028058]"	chr20:46987488-46987429	hs|20q13.13	Agilent_HUMAN_G3V2	ENST00000451572	ENST00000451572	chr20	 46987429	 46987488	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33029_PI429285431	3.6194563	A	4.141209	P	0.696525125163754	0	lncRNA	34644-1_{1..3000}	n339717|AK125862|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2162|NULL|-0.7299570|-0.2398916	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339717|AK125862|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2162|NULL|-0.7299570|-0.2398916	chr20	 49187511	 49190510	-	NA	NA	NA	NA	PTPN1	"hg19_refFlat_PTPN1:range=chr20:49127065-491992525'pad=0,hg19_refFlat_PTPN1:range=chr20:49127065-491992525'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80chr20:49177511-49201088"	NA	inner
LNCA_21_P0000970	0.9468865	A	0.9175042	A	1.02057506577659	0	lncRNA	ENST00000456803	NA	NA	NA	NA	XLOC_000181	NA	ENST00000456803	THC2684388	NA	"BROAD Institute lincRNA (XLOC_000181), lincRNA [TCONS_00000196]"	chr1:48522389-48522448	hs|1p33	Agilent_HUMAN_G3V2	ENST00000456803	ENST00000456803	chr1	 48522389	 48522448	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10166_PI429285431	1.1079905	A	1.1185318	A	0.992719956460628	0	lncRNA	11691-1_{1..338}	lnc-CDRT4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDRT4-1:2	chr17	 15319426	 15319763	-	lnc-CDRT4-1	lnc-CDRT4-1:2	XLOC_012398	linc-TEKT3	NA	NA	NA	inter
LNCA_21_P0010377	7.640262	P	7.7905607	P	0.901063884270213	0	lncRNA	ENST00000420180	NA	NA	NA	NA	XLOC_014338	NA	ENST00000420180	NA	NA	"BROAD Institute lincRNA (XLOC_014338), lincRNA [TCONS_00029468]"	chr22:30107868-30107809	hs|22q12.2	Agilent_HUMAN_G3V2	ENST00000420180	ENST00000420180	chr22	 30107809	 30107868	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48961_PI429285431	4.8642673	P	3.6699557	P	2.28835614286309	0	lncRNA	52800-1_{1..1385}	hg19_lincRNAsTranscripts_TCONS_l2_00019664 range=chr3:192873422-192875018 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019664 range=chr3:192873422-192875018 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	192873422	192874806	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012942	1.6469767	A	0.9151752	A	1.66071153563421	0	lncRNA	ENST00000504609	NA	NA	NA	NA	XLOC_l2_011584	NA	ENST00000504609	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011584), lincRNA [TCONS_l2_00023392]"	chr5:53692897-53692956	hs|5q11.2	Agilent_HUMAN_G3V2	ENST00000504609	ENST00000504609	chr5	 53692897	 53692956	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39455_PI429285431	3.0806706	P	3.0831087	P	0.998311465041021	0	lncRNA	40399-1_{1..1216}	n386957|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vfv.1||1.5945200|-0.1947164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386957|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vfv.1||1.5945200|-0.1947164	chr16	 32187410	 32188625	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70"	NA	inter
CUST_10610_PI429285431	4.857368	P	4.6356053	P	1.16615753995862	0	lncRNA	12140-1_{1..465}	lnc-AP001631.10.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP001631.10.1-1:1	chr21	 44561640	 44562104	-	lnc-AP001631.10.1-1	lnc-AP001631.10.1-1:1	XLOC_014100	linc-U2AF1-5	NA	NA	NA	inter
CUST_50630_PI429285431	0.9143049	A	0.91274273	A	1.0010834001855	0	lncRNA	54314-1_{1..1263}	hg19_lincRNAsTranscripts_TCONS_l2_00003425 range=chr10:22497810-22501886 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003425 range=chr10:22497810-22501886 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 22497810	 22499072	-	NA	NA	NA	NA	EBLN1	NA	chr10:22497743-22498912	inner
CUST_33902_PI429285431	0.9069759	A	1.8444271	A	0.522154553096861	0	lncRNA	35444-1_{1..521}	n340694|AF147432|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3157|NULL|-1.2303400|-0.3369114	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340694|AF147432|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3157|NULL|-1.2303400|-0.3369114	chr5	153689475	153689995	+	NA	NA	NA	NA	GALNT10	NA	chr5:153679475-153699992	inner
CUST_21083_PI429285431	2.7590394	A	1.2473685	A	2.8514009139645	0	lncRNA	22708-2_{3001..3539}	lnc-EIF4E3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-EIF4E3-1:1	chr3	 71625646	 71626184	-	lnc-EIF4E3-1	lnc-EIF4E3-1:1	ENSG00000242094.1	FOXP1-IT1	FOXP1	NA	chr3:71612646-71633140	inner
LNCA_21_P0002608	3.9768112	P	3.8122804	P	1.12080150646225	0	lncRNA	TCONS_00004878	NA	NA	NA	NA	XLOC_001641	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001641), lincRNA [TCONS_00004878]"	chr2:121334884-121345836	hs|2q14.2	Agilent_HUMAN_G3V2	TCONS_00004878	TCONS_00004878	chr2	121334884	121345836	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6075_PI429285431	2.1220481	A	1.8242733	A	1.22924697082674	0	lncRNA	5999-1_{1..582}	"transcript_id ""ENST00000583316.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583316.1"" | genecode_v17"	chr18	  6927307	  6927888	-	ENSG00000265933.1	ENST00000583316.1	LINC00668	LINC00668-006	LAMA1	NA	chr18:6926973-6939804	inter
CUST_14696_PI429285431	5.964309	P	5.039712	P	1.8981539407167	0	lncRNA	16360-6_{15001..16894}	lnc-NAP1L2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-NAP1L2-1:6	chrX	 73076217	 73078110	-	lnc-NAP1L2-1	lnc-NAP1L2-1:6	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90"	NA	inter
LNCA_21_P0013103	0.9271709	A	0.9104029	A	1.01169049784856	0	lncRNA	TCONS_l2_00024953	NA	NA	NA	NA	XLOC_l2_013149	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013149), lincRNA [TCONS_l2_00024953]"	chr6:143287565-143287506	hs|6q24.2	Agilent_HUMAN_G3V2	TCONS_l2_00024953	TCONS_l2_00024953	chr6	143287506	143287565	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35439_PI429285431	9.729079	P	9.934756	P	0.867131680894913	0	lncRNA	36845-1_{1..579}	n342503|AF088021|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4997|NULL|-1.3415400|-0.3993909	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342503|AF088021|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4997|NULL|-1.3415400|-0.3993909	chr3	 51698596	 51699174	+	NA	NA	NA	NA	RAD54L2	NA	chr3:51688596-51697634	inter
CUST_51003_PI429285431	1.0912704	A	1.1644006	A	0.950573310243924	0	lncRNA	54647-1_{1..704}	hg19_lincRNAsTranscripts_TCONS_l2_00006753 range=chr13:25163011-25169283 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006753 range=chr13:25163011-25169283 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 25163011	 25163714	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37036_PI429285431	0.9215772	A	0.9060183	A	1.01084297116935	0	lncRNA	38174-1_{1..655}	n345491|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1040|NULL|-1.3912900|-0.3402012	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345491|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1040|NULL|-1.3912900|-0.3402012	chr1	235115806	235116460	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18794_PI429285431	0.92097765	A	0.9118486	A	1.00634783793364	0	lncRNA	20489-2_{3001..3484}	lnc-SEC61G-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SEC61G-4:1	chr7	 53882201	 53882684	-	lnc-SEC61G-4	lnc-SEC61G-4:1	ENSG00000205628	GS1-179L18.1	NA	NA	NA	inter
CUST_7230_PI429285431	1.8709013	A	2.3794777	A	0.702915707910596	0	lncRNA	7793-1_{1..319}	"transcript_id ""ENST00000516902.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516902.1"" | genecode_v17"	chr6	 47683019	 47683337	+	ENSG00000252711.1	ENST00000516902.1	RN7SKP116	RN7SKP116-201	GPR115	NA	chr6:47673019-47689757	inner
CUST_45596_PI429285431	6.184901	P	5.4868703	P	1.62228883247414	0	lncRNA	49985-1_{1..2389}	"gi|341915533|ref|XR_132791.1| PREDICTED: Homo sapiens uncharacterized LOC100652748 (LOC100652748), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915533|ref|XR_132791.1| PREDICTED: Homo sapiens uncharacterized LOC100652748 (LOC100652748), misc_RNA"	NA	NA	NA	NA	NA	XR_132791.1	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60"	NA	Unknown
CUST_12221_PI429285431	0.9495592	A	0.9183637	A	1.02185854566382	0	lncRNA	13825-1_{1..1330}	lnc-DLL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-DLL1-1:1	chr6	170571504	170572833	-	lnc-DLL1-1	lnc-DLL1-1:1	XLOC_005948	linc-TCTE3-1	NA	NA	NA	inter
CUST_27576_PI429285431	0.9203368	A	0.906608	A	1.00956150085732	0	lncRNA	29154-1_{1..2323}	n324777|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206835|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206835|-0.5076620|-0.1759023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324777|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206835|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206835|-0.5076620|-0.1759023	chr21	 45544587	 45546909	-	NA	NA	NA	NA	C21orf33	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PWP2:range=chr21:45527298-455506535'pad=0,hg19_refFlat_PWP2:range=chr21:45527298-455506535'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60chr21:45553494-45559600"	NA	inner
CUST_34649_PI429285431	0.907349	A	0.90478694	A	1.00177746248247	0	lncRNA	36101-1_{1..420}	n341547|AX785178|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4018|NULL|-1.0152200|-0.4455748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341547|AX785178|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4018|NULL|-1.0152200|-0.4455748	chr8	 82437197	 82437616	+	NA	NA	NA	NA	FABP12	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_FABP12:range=chr8:82437281-824435505'pad=0,hg19_refFlat_FABP12:range=chr8:82437281-824435505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-30.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50chr8:82433755-82443550"	NA	inner
LNCA_19_P00807507	6.4301686	P	6.7460623	P	0.803353186880623	0	lncRNA	TCONS_00019683	NA	NA	NA	NA	XLOC_009483	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009483), lincRNA [TCONS_00019683]"	chr11:68997624-68997565	hs|11q13.3	Agilent_HUMAN_G3V2	TCONS_00019683	TCONS_00019683	chr11	 68997565	 68997624	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011955	0.92217124	A	1.8466437	A	0.526873140699183	0	lncRNA	THC2768846	NA	NA	NA	NA	XLOC_l2_008221	NA	NA	THC2768846	NA	"BROAD Institute lincRNA (XLOC_l2_008221), lincRNA [TCONS_l2_00014843]"	chr2:114587009-114586950	hs|2q14.1	Agilent_HUMAN_G3V2	THC2768846	THC2768846	chr2	114586950	114587009	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49665_PI429285431	2.0061426	A	2.766593	A	0.590312010377676	0	lncRNA	53446-1_{1..619}	hg19_lincRNAsTranscripts_TCONS_l2_00026243 range=chr7:140912417-141170728 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026243 range=chr7:140912417-141170728 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	140912417	140913035	+	NA	NA	NA	NA	LOC100507421	NA	chr7:140902417-141180180	inner
CUST_38260_PI429285431	3.382812	P	3.8113484	P	0.743015184725106	0	lncRNA	39317-1_{1..902}	n381803|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qge.1||-1.0752000|-0.2096927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381803|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qge.1||-1.0752000|-0.2096927	chr11	130272231	130273132	+	NA	NA	NA	NA	ADAMTS8	NA	chr11:130274818-130283133	inter
CUST_10955_PI429285431	2.579005	A	3.788202	P	0.432509282119923	0	lncRNA	12496-1_{1..525}	lnc-RPL13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPL13-1:1	chr16	 89565218	 89565742	+	lnc-RPL13-1	lnc-RPL13-1:1	XLOC_011834	linc-SPG7	ANKRD11	NA	chr16:89555218-89556969	inter
CUST_17377_PI429285431	0.9213539	A	1.3372194	A	0.749569678724147	0	lncRNA	19098-1_{1..2334}	lnc-NFE2L3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NFE2L3-1:1	chr7	 25886348	 25888681	+	lnc-NFE2L3-1	lnc-NFE2L3-1:1	XLOC_006016	linc-NFE2L3-1	NA	NA	NA	inter
CUST_49698_PI429285431	1.4063097	A	0.8888428	A	1.43143970249903	0	lncRNA	53475-1_{1..772}	hg19_lincRNAsTranscripts_TCONS_l2_00025670 range=chr7:12536132-12581438 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025670 range=chr7:12536132-12581438 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 12536132	 12536903	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002095	0.9211719	A	0.9061959	A	1.01043463722887	0	lncRNA	ENST00000432474	NA	NA	NA	NA	XLOC_002297	NA	ENST00000432474	NA	NA	"BROAD Institute lincRNA (XLOC_002297), lincRNA [TCONS_00003391]"	chr2:121312140-121312081	hs|2q14.2	Agilent_HUMAN_G3V2	ENST00000432474	ENST00000432474	chr2	121312081	121312140	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1943_PI429285431	0.9168766	A	0.90670556	A	1.00707493764885	0	lncRNA	1936-1_{1..764}	"transcript_id ""ENST00000513617.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513617.1"" | genecode_v17"	chr4	152720652	152721415	+	ENSG00000249184.1	ENST00000513617.1	RP11-424M21.1	RP11-424M21.1-001	NA	NA	NA	inter
CUST_47945_PI429285431	0.9191327	A	1.3793075	A	0.726898180794597	0	lncRNA	51837-1_{1..961}	"gi|410172450|ref|XR_171783.1| PREDICTED: Homo sapiens uncharacterized LOC101060493, transcript variant 2 (LOC101060493), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172450|ref|XR_171783.1| PREDICTED: Homo sapiens uncharacterized LOC101060493, transcript variant 2 (LOC101060493), misc_RNA"	NA	NA	NA	NA	NA	XR_171783.1	NA	NA	NA	NA	NA	Unknown
CUST_2816_PI429285431	0.9178078	A	0.9160704	A	1.00120499934051	0	lncRNA	2799-1_{1..1039}	"transcript_id ""ENST00000582727.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582727.1"" | genecode_v17"	chr7	 45023214	 45024252	-	ENSG00000232956.3	ENST00000582727.1	SNHG15	SNHG15-006	MYO1G	NA	chr7:45013214-45018704	inter
CUST_41700_PI429285431	6.9700975	P	7.0910406	P	0.919586313989251	0	lncRNA	43191-1_{1..94}	ENST00000390192 ncrna:miRNA chromosome:GRCh37:X:91715451:91715544:1 gene:ENSG00000211526 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390192 ncrna:miRNA chromosome:GRCh37:X:91715451:91715544:1 gene:ENSG00000211526 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 91715451	 91715544	+	ENSG00000211526	ENST00000390192	NA	NA	PCDH11X	NA	chrX:91705451-91725544	inner
CUST_39613_PI429285431	1.5079577	A	1.8083082	A	0.812055085159713	0	lncRNA	40553-1_{1..1839}	n387672|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kzm.1||2.9841100|-0.1975975	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387672|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kzm.1||2.9841100|-0.1975975	chr8	 22497883	 22499721	-	NA	NA	NA	NA	BIN3	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40chr8:22487883-22509722"	NA	inner
CUST_41075_PI429285431	3.3750758	P	2.8957944	A	1.39404912370601	0	lncRNA	41749-1_{1..80}	ENST00000584578 ncrna:miRNA chromosome:GRCh37:10:82904408:82904487:1 gene:ENSG00000265990 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584578 ncrna:miRNA chromosome:GRCh37:10:82904408:82904487:1 gene:ENSG00000265990 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 82904408	 82904487	+	ENSG00000265990	ENST00000584578	NA	NA	NA	NA	NA	inter
CUST_50560_PI429285431	2.0354733	A	1.1738645	A	1.81706345265867	0	lncRNA	54252-1_{1..853}	hg19_lincRNAsTranscripts_TCONS_l2_00031044 range=chrY:15271184-15273460 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00031044 range=chrY:15271184-15273460 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrY	 15271184	 15272036	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34853_PI429285431	9.052943	P	8.386536	P	1.58711536577989	0	lncRNA	36279-1_{1..1752}	n341759|AX810714|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4233|NULL|3.2465800|-0.2401671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341759|AX810714|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4233|NULL|3.2465800|-0.2401671	chr9	115913264	115915015	+	NA	NA	NA	NA	FKBP15	NA	chr9:115927800-115936417	inner
CUST_35090_PI429285431	7.0437694	P	7.6517634	P	0.656108355968249	0	lncRNA	36497-1_{1..1535}	n342053|BC038786|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4534|NULL|1.0086000|-0.1946318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n342053|BC038786|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4534|NULL|1.0086000|-0.1946318	chr12	122233172	122234706	-	NA	NA	NA	NA	SETD1B	NA	chr12:122242638-122251390	inter
CUST_11179_PI429285431	0.9929527	A	1.0426307	A	0.966151943591679	0	lncRNA	12736-1_{1..254}	lnc-CADM1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CADM1-3:1	chr11	115757246	115757499	-	lnc-CADM1-3	lnc-CADM1-3:1	XLOC_009563	linc-CADM1-4	NA	NA	NA	inter
CUST_21289_PI429285431	0.92149335	A	0.9200587	A	1.00099491820568	0	lncRNA	22914-1_{1..544}	lnc-KLHL31-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL31-3:1	chr6	 53912090	 53912633	-	lnc-KLHL31-3	lnc-KLHL31-3:1	ENSG00000235050.1	MLIP-AS1	MLIP	NA	chr6:53902090-53922392	inner
CUST_26487_PI429285431	0.89824545	A	0.89495784	A	1.00228139603493	0	lncRNA	27996-1_{1..427}	lnc-C4orf21-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C4orf21-4:1	chr4	113955682	113956108	-	lnc-C4orf21-4	lnc-C4orf21-4:1	ENSG00000249373.2	RP11-650J17.2	ANK2	NA	chr4:113945682-113965707	inner
LNCA_21_P0008051	6.547056	P	7.1838884	P	0.643123449970676	0	lncRNA	ENST00000441430	NA	NA	NA	NA	XLOC_010352	NA	ENST00000441430	THC2684040	NA	"BROAD Institute lincRNA (XLOC_010352), lincRNA [TCONS_00021758]"	chr13:39152937-39152996	hs|13q13.3	Agilent_HUMAN_G3V2	ENST00000441430	ENST00000441430	chr13	 39152937	 39152996	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18068_PI429285431	5.9067216	P	5.910424	P	0.997436982032264	0	lncRNA	19803-1_{1..1093}	lnc-RABL2A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RABL2A-2:2	chr2	114336158	114337250	+	lnc-RABL2A-2	lnc-RABL2A-2:2	XLOC_001632	linc-RABL2A-1	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50"	NA	inter
CUST_35620_PI429285431	0.9057005	A	0.89854014	A	1.00497552034207	0	lncRNA	37035-1_{1..1944}	n342761|AK094584|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5264|NULL|-0.1658550|-0.2265088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342761|AK094584|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5264|NULL|-0.1658550|-0.2265088	chr11	 44650183	 44652126	-	NA	NA	NA	NA	CD82	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80chr11:44640183-44641339"	NA	inter
CUST_26382_PI429285431	3.399739	P	3.3268576	P	1.05181530879972	0	lncRNA	27888-1_{1..503}	lnc-RBMS1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBMS1-2:1	chr2	162016643	162017145	-	lnc-RBMS1-2	lnc-RBMS1-2:1	ENSG00000224467.1	AC009313.1	TANK	NA	chr2:162006643-162026735	inner
CUST_29146_PI429285431	4.404907	P	4.4700527	P	0.955848780074759	0	lncRNA	30889-1_{1..670}	n326656|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000010559|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000010559|-1.0156900|-0.1531204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326656|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000010559|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000010559|-1.0156900|-0.1531204	chr1	 31069661	 31070330	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32139_PI429285431	1.2570391	A	1.0418136	A	1.16088535202774	0	lncRNA	33839-1_{1..1418}	n338706|U79295|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1126|NULL|-1.1148900|-0.3025973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n338706|U79295|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1126|NULL|-1.1148900|-0.3025973	chr13	 46870579	 46871996	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28426_PI429285431	1.617	A	2.459722	A	0.557590543875598	0	lncRNA	30085-1_{1..547}	n325748|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044714|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044714|-1.0276500|-0.2443859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325748|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044714|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044714|-1.0276500|-0.2443859	chr13	 42630766	 42631312	+	NA	NA	NA	NA	DGKH	NA	chr13:42620766-42641602	inner
CUST_3549_PI429285431	8.221277	P	8.120226	P	1.07255453149341	0	lncRNA	3519-1_{1..545}	"transcript_id ""ENST00000423122.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423122.1"" | genecode_v17"	chr9	132104122	132104666	+	ENSG00000233901.1	ENST00000423122.1	RP11-65J3.1	RP11-65J3.1-002	NA	NA	NA	inter
CUST_40305_PI429285431	1.2778077	A	0.91729385	A	1.28388310150339	0	lncRNA	41108-1_{1..1431}	n408318|NR_029378|lncRNA|Homosapiens||RefGeneNoncode|NR_029378||0.0720537|-0.1456815	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408318|NR_029378|lncRNA|Homosapiens||RefGeneNoncode|NR_029378||0.0720537|-0.1456815	chr14	 70232999	 70234429	-	NA	NA	NA	NA	SLC10A1	NA	chr14:70242552-70244430	inner
CUST_5379_PI429285431	1.8510137	A	3.188508	P	0.395707331411838	0	lncRNA	5315-2_{3001..3222}	"transcript_id ""ENST00000562570.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562570.1"" | genecode_v17"	chr16	  1028761	  1028982	-	ENSG00000260807.2	ENST00000562570.1	RP11-161M6.2	RP11-161M6.2-004	LMF1	NA	chr16:1015761-1031318	inter
CUST_42752_PI429285431	0.94864875	A	0.9228182	A	1.0180656170771	0	lncRNA	45710-1_{1..124}	ENST00000517184 ncrna:snoRNA chromosome:GRCh37:10:93835999:93836122:1 gene:ENSG00000252993 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517184 ncrna:snoRNA chromosome:GRCh37:10:93835999:93836122:1 gene:ENSG00000252993 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	 93835999	 93836122	+	ENSG00000252993	ENST00000517184	NA	NA	CPEB3	NA	chr10:93825999-93846122	inner
CUST_24892_PI429285431	2.1501231	A	2.8675733	P	0.608171366871462	0	lncRNA	26433-1_{1..554}	lnc-SSR3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SSR3-2:2	chr3	156391436	156391989	-	lnc-SSR3-2	lnc-SSR3-2:2	ENSG00000243926.1	TIPARP-AS1	TIPARP	NA	chr3:156392205-156401722	inter
CUST_18660_PI429285431	6.20362	P	6.6408744	P	0.73853878885776	0	lncRNA	20362-1_{1..573}	lnc-TLX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TLX1-2:1	chr10	102992011	102992583	+	lnc-TLX1-2	lnc-TLX1-2:1	ENSG00000257638	RP11-324L3.3	LBX1	NA	chr10:102986733-102988717	inter
CUST_16128_PI429285431	0.91287094	A	0.91097045	A	1.00131818733135	0	lncRNA	17834-1_{1..394}	lnc-HDGFL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HDGFL1-2:1	chr6	 22517914	 22518307	+	lnc-HDGFL1-2	lnc-HDGFL1-2:1	XLOC_005198	linc-HDGFL1-1	NA	NA	NA	inter
CUST_3707_PI429285431	0.92287135	A	1.2144809	A	0.81699007082672	0	lncRNA	3675-1_{1..706}	"transcript_id ""ENST00000442753.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442753.1"" | genecode_v17"	chr10	 64049280	 64049985	+	ENSG00000234756.1	ENST00000442753.1	RP11-120C12.3	RP11-120C12.3-001	NA	NA	NA	inter
CUST_51080_PI429285431	8.594622	P	8.671877	P	0.947859413771061	0	lncRNA	54718-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00007204 range=chr13:52741849-52810431 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007204 range=chr13:52741849-52810431 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 52741849	 52744848	-	NA	NA	NA	NA	NEK3	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70chr13:52731849-52733996"	NA	inter
CUST_7139_PI429285431	1.1461964	A	0.90697974	A	1.18035159200404	0	lncRNA	7075-1_{1..837}	"transcript_id ""ENST00000253470.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000253470.4"" | genecode_v17"	chrY	  8651351	  8652187	-	ENSG00000180910.7	ENST00000253470.4	TTTY11	TTTY11-001	NA	NA	NA	inter
CUST_8045_PI429285431	0.9199371	A	0.9109008	A	1.00628314251358	0	lncRNA	9653-2_{3001..3436}	lnc-KIAA1191-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1191-1:1	chr5	175724929	175725364	-	lnc-KIAA1191-1	lnc-KIAA1191-1:1	ENSG00000251133	ENST00000505928	C5orf25	"hg19_refFlat_SIMC1:range=chr5:175665512-1757724485'pad=0,hg19_refFlat_SIMC1:range=chr5:175665512-1757724485'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40chr5:175711929-175733503"	NA	inner
CUST_719_PI429285431	3.1698718	A	3.680395	P	0.701967819840254	0	lncRNA	712-1_{1..616}	"transcript_id ""ENST00000415657.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000415657.1"" | genecode_v17"	chr2	  6789237	  6789852	-	ENSG00000236172.2	ENST00000415657.1	AC097517.2	AC097517.2-002	NA	NA	NA	inter
CUST_3335_PI429285431	0.9048388	A	0.90266883	A	1.00150524032607	0	lncRNA	3314-1_{1..487}	"transcript_id ""ENST00000521097.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521097.1"" | genecode_v17"	chr8	137802077	137802563	+	ENSG00000254101.1	ENST00000521097.1	RP11-30J20.1	RP11-30J20.1-007	NA	NA	NA	inter
CUST_22751_PI429285431	0.9295758	A	0.9215623	A	1.00556998996249	0	lncRNA	24334-1_{1..520}	lnc-FGF7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FGF7-1:2	chr15	 50175360	 50175879	+	lnc-FGF7-1	lnc-FGF7-1:2	ENSG00000259188.1	CTD-2647E9.3	ATP8B4	NA	chr15:50165360-50185722	inner
LNCA_21_P0004553	1.0114051	A	0.9540332	A	1.04056847118664	0	lncRNA	THC2694829	NA	NA	NA	NA	XLOC_004742	NA	NA	THC2694829	NA	"BROAD Institute lincRNA (XLOC_004742), lincRNA [TCONS_00010903]"	chr5:016180660-016180601	hs|5p15.1	Agilent_HUMAN_G3V2	THC2694829	THC2694829	chr5	 16180601	 16180660	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011376	15.227212	P	13.994268	P	2.35046141898928	0	lncRNA	TCONS_l2_00009118	NA	NA	NA	NA	XLOC_l2_004940	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004940), lincRNA [TCONS_l2_00009118]"	chr15:53229192-53229133	hs|15q21.3	Agilent_HUMAN_G3V2	TCONS_l2_00009118	TCONS_l2_00009118	chr15	 53229133	 53229192	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28418_PI429285431	3.8988295	P	4.4292865	P	0.692335389438892	0	lncRNA	30078-1_{1..2036}	n325741|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044748|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044748|0.2889360|-0.2925876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325741|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044748|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044748|0.2889360|-0.2925876	chr13	 44271638	 44273673	-	NA	NA	NA	NA	ENOX1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40chr13:44261638-44291766"	NA	inner
CUST_28992_PI429285431	0.9185374	A	0.910904	A	1.00530509211762	0	lncRNA	30716-1_{1..377}	n326476|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033546|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033546|-0.9400910|-0.2570283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326476|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033546|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033546|-0.9400910|-0.2570283	chr1	113352398	113352774	+	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00"	NA	inter
CUST_47863_PI429285431	4.7155604	P	3.0812328	A	3.10442827516991	0	lncRNA	51765-1_{1..3000}	"gi|410171170|ref|XR_171189.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410171170|ref|XR_171189.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	XR_171189.1	NA	NA	NA	NA	NA	Unknown
CUST_49224_PI429285431	4.0101457	P	3.5990925	P	1.32965613891958	0	lncRNA	53044-1_{1..1155}	hg19_lincRNAsTranscripts_TCONS_l2_00021469 range=chr4:187337206-187422182 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021469 range=chr4:187337206-187422182 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	187337206	187338360	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28865_PI429285431	0.9162543	A	0.90691197	A	1.00649662179073	0	lncRNA	30578-1_{1..850}	n326285|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086757|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086757|-1.1478600|-0.3290054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326285|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086757|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086757|-1.1478600|-0.3290054	chr1	191919998	191920847	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30"	NA	inter
CUST_1804_PI429285431	0.9281936	A	0.9145571	A	1.00949691371786	0	lncRNA	1791-1_{1..422}	"transcript_id ""ENST00000509215.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509215.1"" | genecode_v17"	chr4	 76266489	 76266910	-	ENSG00000251454.1	ENST00000509215.1	RP11-542G1.2	RP11-542G1.2-001	NA	NA	NA	inter
CUST_11874_PI429285431	1.4027802	A	1.1063309	A	1.22811809844628	0	lncRNA	13455-1_{1..850}	lnc-PTS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTS-2:1	chr11	112237174	112238023	+	lnc-PTS-2	lnc-PTS-2:1	XLOC_009279	linc-NCAM1-2	NA	NA	NA	inter
CUST_23943_PI429285431	2.6467614	A	3.281648	A	0.643991432353437	0	lncRNA	25500-1_{1..415}	lnc-ING5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ING5-1:1	chr2	242633530	242633944	+	lnc-ING5-1	lnc-ING5-1:1	ENSG00000228989.1	AC133528.2	ING5	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90chr2:242641456-242643704"	NA	inter
CUST_24346_PI429285431	2.5866442	A	3.5731807	A	0.504687933848025	0	lncRNA	25899-1_{1..3000}	lnc-TBC1D29-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBC1D29-1:1	chr17	 28903482	 28906481	+	lnc-TBC1D29-1	lnc-TBC1D29-1:1	ENSG00000214719.5	LRRC37BP1	NA	"hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.92"	NA	inter
LNCA_21_P0011401	5.5659137	P	5.303114	P	1.19980479305477	0	lncRNA	BC037839	NA	BC037839	NA	NA	XLOC_l2_004611	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004611), lincRNA [TCONS_l2_00009425]"	chr15:32868143-32871909	hs|15q13.3	Agilent_HUMAN_G3V2	BC037839	BC037839	chr15	 32868143	 32871909	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007031	1.0302734	A	0.96261954	A	1.04801100029976	0	lncRNA	TCONS_00018637	NA	NA	NA	NA	XLOC_008986	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008986), lincRNA [TCONS_00018637]"	chr10:128591630-128591571	hs|10q26.2	Agilent_HUMAN_G3V2	TCONS_00018637	TCONS_00018637	chr10	128591571	128591630	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20560_PI429285431	0.9195619	A	1.0668645	A	0.902937102539088	0	lncRNA	22201-1_{1..327}	lnc-TMEM65-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM65-3:1	chr8	125052681	125053007	-	lnc-TMEM65-3	lnc-TMEM65-3:1	ENSG00000254249.1	RP11-959I15.4	FER1L6	NA	chr8:125042681-125062709	inter
CUST_50086_PI429285431	5.4892135	P	6.504196	P	0.494834330549068	0	lncRNA	53820-1_{1..451}	hg19_lincRNAsTranscripts_TCONS_l2_00027964 range=chr8:123781577-123782123 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027964 range=chr8:123781577-123782123 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	123781577	123782027	+	NA	NA	NA	NA	ZHX2	NA	chr8:123781468-123792123	inter
CUST_22883_PI429285431	0.90291363	A	1.1838675	A	0.823046661675754	0	lncRNA	24460-1_{1..727}	lnc-LIF-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIF-2:2	chr22	 30476117	 30476843	-	lnc-LIF-2	lnc-LIF-2:2	ENSG00000227117.2	CTA-85E5.10	HORMAD2	NA	chr22:30466117-30486427	inter
CUST_17238_PI429285431	0.91935074	A	0.91713256	A	1.00153870781088	0	lncRNA	18956-1_{1..633}	lnc-ROBO2-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ROBO2-4:3	chr3	 80838388	 80839020	+	lnc-ROBO2-4	lnc-ROBO2-4:3	XLOC_002716	linc-CADM2-8	NA	NA	NA	inter
LNCA_19_P00317818	5.6070304	P	5.54914	P	1.04094251539014	0	lncRNA	AK126880	NA	AK126880	NA	Hs.563592	XLOC_007808	NA	NA	THC2606605	NA	"BROAD Institute lincRNA (XLOC_007808), lincRNA [TCONS_00016444]"	chr9:102565917-102565858	hs|9q22.33	Agilent_HUMAN_G3V2	AK126880	AK126880	chr9	102565858	102565917	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008973	0.92894566	A	0.92413145	A	1.00334252992425	0	lncRNA	TCONS_00024473	NA	NA	NA	NA	XLOC_011794	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011794), lincRNA [TCONS_00024473]"	chr16:77809241-77809300	hs|16q23.1	Agilent_HUMAN_G3V2	TCONS_00024473	TCONS_00024473	chr16	 77809241	 77809300	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_98_PI429201921	4.238214	P	4.320697	P	0.94443080199181	0	lncRNA	101-1_{1..2857}	TC0Y000294.hg.1	 TCONS_00017583-XLOC_008314 // Rinn lincRNAs // linc-SRY-1 chrY:-:6339072-6341671 // chrY // 100 // 100 // 0 // --- // 0///TCONS_00017624-XLOC_008314 // Rinn lincRNAs // linc-SRY-1 chrY:-:6338813-6341671 // chrY // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:6338813-6341671	NA	Affy_HUMAN_HTA2.0	TCONS_00017624-XLOC_008314	linc-SRY-1	chrY	  6338813	  6341671	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41172_PI429285431	4.417226	P	3.9597805	P	1.37310837763719	0	lncRNA	42002-1_{1..85}	ENST00000408439 ncrna:miRNA chromosome:GRCh37:22:20073581:20073665:1 gene:ENSG00000221366 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408439 ncrna:miRNA chromosome:GRCh37:22:20073581:20073665:1 gene:ENSG00000221366 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 20073581	 20073665	+	ENSG00000221366	ENST00000408439	NA	NA	DGCR8	NA	chr22:20067755-20083665	inner
CUST_37315_PI429285431	1.7958019	A	1.4348598	A	1.28426426629255	0	lncRNA	38422-1_{1..858}	n345759|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1308|NULL|-1.3153000|-0.3505023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345759|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1308|NULL|-1.3153000|-0.3505023	chr18	 14183698	 14184555	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30281_PI429285431	6.3777637	P	5.632456	P	1.67633176157527	0	lncRNA	32057-1_{1..227}	n335177|AY425959|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254574|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254574|1.7689900|-0.1001894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335177|AY425959|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254574|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254574|1.7689900|-0.1001894	chr10	 51585311	 51585537	+	NA	NA	NA	NA	TIMM23	NA	chr10:51592088-51596347	inner
CUST_48577_PI429285431	3.7192965	P	3.9956045	P	0.8257013676845	0	lncRNA	52425-1_{1..1188}	hg19_lincRNAsTranscripts_TCONS_l2_00013449 range=chr2:7561499-7569603 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013449 range=chr2:7561499-7569603 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	  7561499	  7562686	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12846_PI429285431	0.9051533	A	0.9014985	A	1.00253652586761	0	lncRNA	14473-1_{1..3000}	lnc-CRIPAK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRIPAK-1:1	chr4	  1549531	  1552530	+	lnc-CRIPAK-1	lnc-CRIPAK-1:1	XLOC_003422	linc-TACC3	NA	NA	NA	inter
CUST_8460_PI429285431	2.8497744	A	2.3955092	A	1.370084809415	0	lncRNA	10028-1_{1..419}	lnc-SHPRH-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SHPRH-2:3	chr6	147523506	147523924	-	lnc-SHPRH-2	lnc-SHPRH-2:3	ENSG00000233452	RP11-497D6.4	STXBP5	NA	chr6:147525494-147533603	inter
LNCA_19_P00320780	6.7718825	P	6.687401	P	1.06030660206848	0	lncRNA	ENST00000438867	NA	NA	NA	NA	XLOC_008144	NA	ENST00000438867	NA	NA	"BROAD Institute lincRNA (XLOC_008144), lincRNA [TCONS_00017054]"	chrX:39260766-39260707	hs|Xp11.4	Agilent_HUMAN_G3V2	ENST00000438867	ENST00000438867	chrX	 39260707	 39260766	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27171_PI429285431	0.9165024	A	0.92388904	A	0.994893056315688	0	lncRNA	28710-1_{1..557}	n324299|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043200|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043200|-0.8325120|-0.3310213	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324299|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043200|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043200|-0.8325120|-0.3310213	chr6	168858669	168859225	+	NA	NA	NA	NA	SMOC2	NA	chr6:168848669-168875529	inner
CUST_27920_PI429285431	6.8568583	P	7.40639	P	0.683241873261465	0	lncRNA	29521-1_{1..390}	n325164|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331364|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331364|-1.1998800|-0.3197786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325164|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331364|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331364|-1.1998800|-0.3197786	chr2	114305234	114305623	-	NA	NA	NA	NA	NA	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0,hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-26.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-60.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30"	NA	inter
CUST_50729_PI429285431	1.1847044	A	1.6451156	A	0.726779081021539	0	lncRNA	54397-1_{1..1525}	hg19_lincRNAsTranscripts_TCONS_l2_00003767 range=chr10:114073774-114078594 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003767 range=chr10:114073774-114078594 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	114073774	114075298	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41859_PI429285431	2.9845445	A	2.377876	A	1.52273880718158	0	lncRNA	43513-1_{1..138}	ENST00000408479 ncrna:miRNA chromosome:GRCh37:1:224444706:224444843:-1 gene:ENSG00000221406 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408479 ncrna:miRNA chromosome:GRCh37:1:224444706:224444843:-1 gene:ENSG00000221406 gene_biotype:miRNA transcript_biotype:miRNA	chr1	224444706	224444843	-	ENSG00000221406	ENST00000408479	NA	NA	NVL	NA	chr1:224434706-224454843	inner
CUST_15584_PI429285431	1.752357	A	0.91810256	A	1.78293541034495	0	lncRNA	17269-1_{1..348}	lnc-RBM26-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-RBM26-3:1	chr13	 80144698	 80145045	-	lnc-RBM26-3	lnc-RBM26-3:1	XLOC_010668	linc-RBM26-3	NA	NA	NA	inter
CUST_48496_PI429285431	3.8918889	P	4.412858	P	0.696903545636775	0	lncRNA	52349-1_{1..615}	hg19_lincRNAsTranscripts_TCONS_l2_00001906 range=chr1:246942005-246944345 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001906 range=chr1:246942005-246944345 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	246942005	246942619	-	NA	NA	NA	NA	LOC100130097	NA	chr1:246935180-246948062	inter
CUST_13365_PI429285431	9.283905	P	8.958038	P	1.25341746434436	0	lncRNA	15003-1_{1..512}	lnc-STX18-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STX18-1:5	chr4	  4577483	  4577994	-	lnc-STX18-1	lnc-STX18-1:5	XLOC_003863	linc-STX18-1	NA	NA	NA	inter
CUST_19758_PI429285431	0.9382501	A	1.2677895	A	0.795790510138315	0	lncRNA	21416-1_{1..1943}	lnc-SNTG2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SNTG2-3:1	chr2	   681256	   683198	+	lnc-SNTG2-3	lnc-SNTG2-3:1	ENSG00000233296.1	AC092159.2	TMEM18	"hg19_refFlat_TMEM18:range=chr2:669580-6773455'pad=0,hg19_refFlat_TMEM18:range=chr2:669580-6773455'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20chr2:671256-677439"	NA	inter
CUST_17617_PI429285431	1.2253008	A	0.9102829	A	1.24402708826297	0	lncRNA	19341-1_{1..205}	lnc-AL355390.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL355390.1-2:2	chr13	 75306837	 75307041	-	lnc-AL355390.1-2	lnc-AL355390.1-2:2	XLOC_010654	linc-KLF12-2	NA	NA	NA	inter
CUST_26991_PI429285431	0.9102991	A	0.90885735	A	1.00099984445912	0	lncRNA	28518-1_{1..891}	n324091|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129824|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129824|-0.8323310|-0.3300799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324091|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129824|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129824|-0.8323310|-0.3300799	chr9	 45104573	 45105463	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10099_PI429285431	0.9223649	M	0.92676103	A	0.996957472780737	0	lncRNA	11623-2_{3001..6000}	lnc-BATF3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BATF3-2:2	chr1	212813445	212816444	-	lnc-BATF3-2	lnc-BATF3-2:2	XLOC_001195	linc-TMEM206-2	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10"	NA	inter
CUST_35996_PI429285431	3.1154108	P	3.374887	P	0.835391170258505	0	lncRNA	37332-1_{1..2144}	n344607|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_155|NULL|-1.3817900|-0.4070197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344607|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_155|NULL|-1.3817900|-0.4070197	chr3	112130090	112132233	-	NA	NA	NA	NA	BTLA	NA	chr3:112182813-112189627	inter
CUST_13466_PI429285431	0.9279542	A	1.2419934	A	0.804386514361796	0	lncRNA	15104-1_{1..574}	lnc-PPAP2B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPAP2B-4:1	chr1	 56526365	 56526938	-	lnc-PPAP2B-4	lnc-PPAP2B-4:1	XLOC_000842	linc-USP24-3	NA	NA	NA	inter
CUST_25080_PI429285431	7.425042	P	9.720083	M	0.203762292290777	0	lncRNA	26616-2_{3001..3939}	lnc-CHAC2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHAC2-4:1	chr2	 52637116	 52638054	+	lnc-CHAC2-4	lnc-CHAC2-4:1	ENSG00000231918.1	AC007682.1	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.00"	NA	inter
CUST_4378_PI429285431	0.9169656	A	0.91605854	A	1.00062892377127	0	lncRNA	4331-2_{3001..6000}	"transcript_id ""ENST00000504409.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000504409.3"" | genecode_v17"	chr12	 92863227	 92866226	+	ENSG00000205056.8	ENST00000504409.3	RP11-693J15.5	RP11-693J15.5-001	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.91;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.56;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.21;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_42160_PI429285431	0.9219723	A	0.92340255	A	0.999009117493615	0	lncRNA	44194-1_{1..77}	ENST00000584029 ncrna:miRNA chromosome:GRCh37:3:131704699:131704775:-1 gene:ENSG00000265859 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584029 ncrna:miRNA chromosome:GRCh37:3:131704699:131704775:-1 gene:ENSG00000265859 gene_biotype:miRNA transcript_biotype:miRNA	chr3	131704699	131704775	-	ENSG00000265859	ENST00000584029	NA	NA	CPNE4	NA	chr3:131694699-131714775	inner
CUST_36521_PI429285431	0.91963655	A	0.9113226	A	1.00577942782471	0	lncRNA	37720-1_{1..960}	n345021|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_570|NULL|-1.3894200|-0.2506467	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345021|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_570|NULL|-1.3894200|-0.2506467	chr8	118699745	118700704	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41266_PI429285431	4.347289	P	4.237664	P	1.07894774895611	0	lncRNA	42231-1_{1..75}	ENST00000384904 ncrna:miRNA chromosome:GRCh37:15:75645952:75646026:-1 gene:ENSG00000207636 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384904 ncrna:miRNA chromosome:GRCh37:15:75645952:75646026:-1 gene:ENSG00000207636 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 75645952	 75646026	-	ENSG00000207636	ENST00000384904	NA	NA	NEIL1	NA	chr15:75639331-75647588	inter
CUST_38580_PI429285431	13.528841	P	13.124775	P	1.32323197336124	0	lncRNA	39591-1_{1..405}	n383576|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002qyd.1||0.6455210|-0.2246757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383576|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002qyd.1||0.6455210|-0.2246757	chr2	  3664889	  3665293	-	NA	NA	NA	NA	COLEC11	NA	chr2:3654889-3675294	inner
CUST_50900_PI429285431	2.4471805	A	2.2610857	A	1.13767998276934	0	lncRNA	54542-1_{1..514}	hg19_lincRNAsTranscripts_TCONS_l2_00006068 range=chr12:5343468-5352289 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006068 range=chr12:5343468-5352289 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  5343468	  5343981	-	NA	NA	NA	NA	LOC100507271	NA	chr12:5343813-5347432	inter
CUST_14948_PI429285431	0.91944075	A	0.9010934	A	1.0127986241278	0	lncRNA	16612-1_{1..249}	lnc-EVX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EVX1-2:1	chr7	 27261147	 27261395	+	lnc-EVX1-2	lnc-EVX1-2:1	XLOC_006027	linc-EVX1-1	NA	NA	NA	inter
CUST_17967_PI429285431	1.2076963	A	1.2286773	A	0.98556231650898	0	lncRNA	19699-2_{3001..3835}	lnc-ECI2-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ECI2-2:6	chr6	  4350244	  4351078	-	lnc-ECI2-2	lnc-ECI2-2:6	XLOC_005589	linc-PECI-2	NA	NA	NA	inter
CUST_32244_PI429285431	0.91023904	A	0.9003573	A	1.00687301169663	0	lncRNA	33936-1_{1..1239}	n338819|BC029533|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1242|NULL|-0.2222620|-0.2607530	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338819|BC029533|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1242|NULL|-0.2222620|-0.2607530	chr13	 97600271	 97601509	+	NA	NA	NA	NA	OXGR1	"hg19_refFlat_TULP3:range=chr12:3000114-30486105'pad=0,hg19_refFlat_TULP3:range=chr12:3000114-30486105'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TULP3:range=chr12:3000114-30498925'pad=0,hg19_refFlat_TULP3:range=chr12:3000114-30498925'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40chr13:97598849-97611835"	NA	inter
CUST_1177_PI429285431	0.91897684	A	0.9049451	A	1.00977351286591	0	lncRNA	1166-1_{1..463}	"transcript_id ""ENST00000605021.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605021.1"" | genecode_v17"	chr2	179509444	179509906	+	ENSG00000271401.1	ENST00000605021.1	RP11-171I2.3	RP11-171I2.3-001	TTN	NA	chr2:179499444-179519906	inter
CUST_51610_PI429285431	4.081362	P	3.976641	P	1.07528642278992	0	lncRNA	55176-1_{1..1310}	hg19_lincRNAsTranscripts_TCONS_l2_00010743 range=chr17:37201620-37209452 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010743 range=chr17:37201620-37209452 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 37201620	 37202929	+	NA	NA	NA	NA	NA	"hg19_refFlat_ARL17A:range=chr17_ctg5_hap1:195721-1959975'pad=0,hg19_refFlat_ARL17A:range=chr17_ctg5_hap1:195721-1959975'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ARL17B:range=chr17:44416866-444357635'pad=0,hg19_refFlat_ARL17B:range=chr17:44416866-444357635'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ARL17A:range=chr17:44416866-444357635'pad=0,hg19_refFlat_ARL17A:range=chr17:44416866-444357635'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ARL17A:range=chr17_ctg5_hap1:394983-4139185'pad=0,hg19_refFlat_ARL17A:range=chr17_ctg5_hap1:394983-4139185'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ARL17B:range=chr17_ctg5_hap1:394983-4139185'pad=0,hg19_refFlat_ARL17B:range=chr17_ctg5_hap1:394983-4139185'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ARL17A:range=chr17:44634722-446536885'pad=0,hg19_refFlat_ARL17A:range=chr17:44634722-446536885'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ARL17A:range=chr17_ctg5_hap1:1491572-15104845'pad=0,hg19_refFlat_ARL17A:range=chr17_ctg5_hap1:1491572-15104845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00"	NA	inter
LNCA_33_P3364023	0.92766577	A	1.3852448	A	0.728207230124663	0	lncRNA	ENST00000473249	XR_109669	XR_109669	NA	Hs.567951	NA	NA	ENST00000473249	THC2517042	NA	"PREDICTED: Homo sapiens hypothetical LOC388820 (LOC388820), miscRNA [XR_109669]"	chr21:35791691-35791632	hs|21q22.11	Agilent_HUMAN_G3V2	ENST00000473249	ENST00000473249	chr21	 35791632	 35791691	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003753	0.9265238	A	0.9097902	A	1.01166637512184	0	lncRNA	TCONS_00008533	NA	NA	NA	NA	XLOC_004023	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004023), lincRNA [TCONS_00008533]"	chr4:99708180-99706634	hs|4q23	Agilent_HUMAN_G3V2	TCONS_00008533	TCONS_00008533	chr4	 99706634	 99708180	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8224_PI429285431	2.8682473	A	3.343119	A	0.719530775595681	0	lncRNA	9815-1_{1..1381}	lnc-SERHL2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERHL2-3:1	chr22	 43116750	 43118130	+	lnc-SERHL2-3	lnc-SERHL2-3:1	ENSG00000248178	AL049757.1	A4GALT	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60chr22:43106750-43116876"	NA	inner
LNCA_21_P0002523	3.5655897	P	3.59445	P	0.980194325571555	0	lncRNA	TCONS_00004502	NA	NA	NA	NA	XLOC_002401	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002401), lincRNA [TCONS_00004502]"	chr2:176748787-176748728	hs|2q31.1	Agilent_HUMAN_G3V2	TCONS_00004502	TCONS_00004502	chr2	176748728	176748787	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5275_PI429285431	3.0737236	P	3.1938214	P	0.920125273407653	0	lncRNA	5215-1_{1..2569}	"transcript_id ""ENST00000440479.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440479.1"" | genecode_v17"	chr15	 83379225	 83381793	-	ENSG00000228141.2	ENST00000440479.1	AC105339.1	AC105339.1-002	AP3B2	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.26;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-24.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00chr15:83369225-83378635"	NA	inter
CUST_32291_PI429285431	0.9176856	A	0.9189991	A	0.999089965511111	0	lncRNA	33975-1_{1..2736}	n338868|AK091143|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1293|NULL|-0.8236410|-0.3300605	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338868|AK091143|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1293|NULL|-0.8236410|-0.3300605	chr2	 66554654	 66557389	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48670_PI429285431	6.765686	P	7.1651087	P	0.758161603861546	0	lncRNA	52513-1_{1..852}	hg19_lincRNAsTranscripts_TCONS_l2_00014712 range=chr2:96498771-96500862 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014712 range=chr2:96498771-96500862 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 96498771	 96499622	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12335_PI429285431	0.9222843	A	0.9222268	A	1.00003985675714	0	lncRNA	13947-1_{1..208}	lnc-CHMP2B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHMP2B-2:2	chr3	 86729265	 86729472	+	lnc-CHMP2B-2	lnc-CHMP2B-2:2	XLOC_002725	linc-CHMP2B-2	NA	NA	NA	inter
CUST_6854_PI429285431	1.0694472	A	1.7168063	A	0.638447944281537	0	lncRNA	6802-1_{1..348}	"transcript_id ""ENST00000445464.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445464.1"" | genecode_v17"	chr21	 37455157	 37455504	+	ENSG00000236119.1	ENST00000445464.1	AP000688.15	AP000688.15-001	CBR1	NA	chr21:37445157-37445462	inter
CUST_4145_PI429285431	1.7539166	A	1.7295759	A	1.01701481831808	0	lncRNA	4104-1_{1..992}	"transcript_id ""ENST00000537192.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537192.1"" | genecode_v17"	chr12	  5399646	  5400637	+	ENSG00000256417.1	ENST00000537192.1	RP11-1038A11.3	RP11-1038A11.3-002	NA	NA	NA	inter
CUST_41657_PI429285431	2.2539253	A	1.8343337	A	1.33754886610554	0	lncRNA	43073-1_{1..67}	ENST00000362161 ncrna:miRNA chromosome:GRCh37:19:54290929:54290995:1 gene:ENSG00000199031 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362161 ncrna:miRNA chromosome:GRCh37:19:54290929:54290995:1 gene:ENSG00000199031 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54290929	 54290995	+	ENSG00000199031	ENST00000362161	NA	NA	NLRP12	NA	chr19:54296838-54300995	inter
CUST_49184_PI429285431	4.2043796	P	4.398846	P	0.873896058261089	0	lncRNA	53008-1_{1..1591}	hg19_lincRNAsTranscripts_TCONS_l2_00021336 range=chr4:146998878-147038560 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021336 range=chr4:146998878-147038560 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	146998878	147000468	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36973_PI429285431	0.91650563	A	1.3041315	A	0.764386460848046	0	lncRNA	38120-1_{1..554}	n345436|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_985|NULL|-1.3379500|-0.2775428	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345436|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_985|NULL|-1.3379500|-0.2775428	chr1	 33886392	 33886945	+	NA	NA	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00"	NA	inter
CUST_3589_PI429285431	6.0059876	P	6.0848465	P	0.946806227261601	0	lncRNA	3559-1_{1..463}	"transcript_id ""ENST00000436340.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436340.1"" | genecode_v17"	chr10	  3308195	  3308657	+	ENSG00000227338.1	ENST00000436340.1	RP11-195B3.1	RP11-195B3.1-001	NA	NA	NA	inter
CUST_38067_PI429285431	8.604603	P	8.976437	P	0.772799464718334	0	lncRNA	39145-1_{1..335}	n381037|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ahc.1||0.5918840|-0.1950390	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381037|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ahc.1||0.5918840|-0.1950390	chr1	  1586822	  1587156	-	NA	NA	NA	NA	CDK11B	NA	chr1:1576822-1590473	inner
CUST_51907_PI429285431	5.239056	P	5.2412057	P	0.998511051091924	0	lncRNA	55450-2_{3001..3283}	hg19_lincRNAsTranscripts_TCONS_l2_00012778 range=chr19:59086565-59111095 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012778 range=chr19:59086565-59111095 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 59089565	 59089847	+	NA	NA	NA	NA	MZF1	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10chr19:59076565-59084942"	NA	inter
CUST_43643_PI429285431	4.7468686	P	5.5147753	P	0.587268963433776	0	lncRNA	48401-1_{1..1495}	"gi|254553490|ref|NR_028106.1| Homo sapiens DDB1 and CUL4 associated factor 8 (DCAF8), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254553490|ref|NR_028106.1| Homo sapiens DDB1 and CUL4 associated factor 8 (DCAF8), transcript variant 5, non-coding RNA"	Chr1	160209012	160210506	-	50717	NR_028106.1	NA	NA	NA	NA	NA	inter
CUST_20451_PI429285431	4.9066114	P	5.194119	P	0.819316287440185	0	lncRNA	22095-1_{1..688}	lnc-GNAT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNAT2-1:1	chr1	110172873	110173560	-	lnc-GNAT2-1	lnc-GNAT2-1:1	ENSG00000228703.1	RP5-1160K1.6	AMPD2	"hg19_refFlat_AMPD2:range=chr1:110163636-1101737745'pad=0,hg19_refFlat_AMPD2:range=chr1:110163636-1101737745'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.50;hg19_refFlat_AMPD2:range=chr1:110162891-1101737745'pad=0,hg19_refFlat_AMPD2:range=chr1:110162891-1101737745'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.50;hg19_refFlat_AMPD2:range=chr1:110168026-1101737745'pad=0,hg19_refFlat_AMPD2:range=chr1:110168026-1101737745'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.50;hg19_refFlat_AMPD2:range=chr1:110168257-1101737745'pad=0,hg19_refFlat_AMPD2:range=chr1:110168257-1101737745'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.50chr1:110162873-110174677"	NA	inner
CUST_47837_PI429285431	7.054059	P	6.625297	P	1.34607798978027	0	lncRNA	51744-1_{1..645}	"gi|410170963|ref|XR_171125.1| PREDICTED: Homo sapiens vesicle-trafficking protein SEC22b-like (LOC100996517), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170963|ref|XR_171125.1| PREDICTED: Homo sapiens vesicle-trafficking protein SEC22b-like (LOC100996517), misc_RNA"	NA	NA	NA	NA	NA	XR_171125.1	NA	NA	NA	NA	NA	Unknown
CUST_21376_PI429285431	0.9174422	A	0.9042668	A	1.00917431979764	0	lncRNA	22998-1_{1..441}	lnc-IGSF11-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGSF11-2:7	chr3	117407354	117407794	-	lnc-IGSF11-2	lnc-IGSF11-2:7	ENSG00000241213.1	RP11-768G7.2	NA	NA	NA	inter
CUST_18751_PI429285431	5.2582884	P	5.3982577	P	0.907538467183989	0	lncRNA	20447-1_{1..576}	lnc-SLC39A11-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC39A11-3:1	chr17	 70053600	 70054175	-	lnc-SLC39A11-3	lnc-SLC39A11-3:1	ENSG00000254148	RP11-84E24.2	NA	NA	NA	inter
LNCA_21_P0001684	1.9727676	A	1.9934589	A	0.985760241963453	0	lncRNA	TCONS_00002052	NA	NA	NA	NA	XLOC_000236	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000236), lincRNA [TCONS_00002052]"	chr1:67993091-67997818	hs|1p31.3	Agilent_HUMAN_G3V2	TCONS_00002052	TCONS_00002052	chr1	 67993091	 67997818	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30549_PI429285431	0.9128635	A	0.9153491	A	0.998278596685189	0	lncRNA	32330-1_{1..227}	n335727|CR749858|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000306781|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000306781|-0.9709070|-0.2708467	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335727|CR749858|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000306781|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000306781|-0.9709070|-0.2708467	chr1	 85483655	 85483881	-	NA	NA	NA	NA	MCOLN3	NA	chr1:85483765-85493882	inner
CUST_42925_PI429285431	0.90696776	A	0.9116745	A	0.996742852490901	0	lncRNA	46032-1_{1..124}	ENST00000391306 ncrna:snoRNA chromosome:GRCh37:3:53421740:53421863:-1 gene:ENSG00000212608 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391306 ncrna:snoRNA chromosome:GRCh37:3:53421740:53421863:-1 gene:ENSG00000212608 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	 53421740	 53421863	-	ENSG00000212608	ENST00000391306	NA	NA	NA	NA	NA	inter
CUST_46029_PI429285431	0.8954912	A	0.99750745	A	0.931729934573539	0	lncRNA	50310-1_{1..551}	"gi|397139446|ref|XR_110339.2| PREDICTED: Homo sapiens uncharacterized LOC100506125, transcript variant 1 (LOC100506125), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139446|ref|XR_110339.2| PREDICTED: Homo sapiens uncharacterized LOC100506125, transcript variant 1 (LOC100506125), misc_RNA"	Chr12	 49183305	 49183855	+	100506125	XR_110339.3	NA	NA	NA	NA	NA	inter
CUST_4012_PI429285431	0.8976215	A	0.89378476	A	1.00266296492248	0	lncRNA	3973-1_{1..2157}	"transcript_id ""ENST00000502071.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502071.2"" | genecode_v17"	chr11	 74022407	 74024563	+	ENSG00000246211.2	ENST00000502071.2	RP11-632K5.3	RP11-632K5.3-001	PGM2L1	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chr11:74041361-74045750"	NA	inner
CUST_17005_PI429285431	1.074228	A	1.5463328	A	0.720912065460244	0	lncRNA	18715-1_{1..506}	lnc-NTRK2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTRK2-2:1	chr9	 87172828	 87173333	+	lnc-NTRK2-2	lnc-NTRK2-2:1	XLOC_007429	linc-NTRK2-3	NA	NA	NA	inter
CUST_36518_PI429285431	2.2132554	A	2.308319	A	0.936230973568061	0	lncRNA	37717-1_{1..538}	n345018|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_567|NULL|-1.3250000|-0.3613185	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345018|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_567|NULL|-1.3250000|-0.3613185	chr8	104369498	104370035	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33190_PI429285431	1.7819706	A	1.5183973	A	1.20044832329286	0	lncRNA	34782-1_{1..1053}	n339883|BC034434|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2331|NULL|-1.0464400|-0.3034713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339883|BC034434|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2331|NULL|-1.0464400|-0.3034713	chr18	 51105992	 51107044	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49884_PI429285431	0.91520584	A	0.91472244	A	1.00033512348842	0	lncRNA	53635-1_{1..1263}	hg19_lincRNAsTranscripts_TCONS_l2_00026697 range=chr7:76680283-76682520 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026697 range=chr7:76680283-76682520 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 76680283	 76681545	-	NA	NA	NA	NA	LOC100505767	NA	chr7:76682095-76689829	inter
CUST_48528_PI429285431	0.9220494	A	0.9053823	A	1.01161974415581	0	lncRNA	52378-1_{1..364}	hg19_lincRNAsTranscripts_TCONS_l2_00014572 range=chr2:52953814-53188604 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014572 range=chr2:52953814-53188604 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 52953814	 52954177	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006189	0.92363095	A	0.9105692	A	1.00909482403395	0	lncRNA	TCONS_00016095	NA	NA	NA	NA	XLOC_007486	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007486), lincRNA [TCONS_00016095]"	chr9:101691689-101691748	hs|9q22.33	Agilent_HUMAN_G3V2	TCONS_00016095	TCONS_00016095	chr9	101691689	101691748	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22650_PI429285431	9.09834	P	9.174311	P	0.948703385090009	0	lncRNA	24235-1_{1..413}	lnc-SERPINB6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SERPINB6-1:2	chr6	  2998851	  2999263	-	lnc-SERPINB6-1	lnc-SERPINB6-1:2	ENSG00000224846.1	RP1-90J20.8	NQO2	NA	chr6:3000067-3008977	inter
CUST_42366_PI429285431	2.4925823	A	2.8429174	A	0.7844018808709	0	lncRNA	45042-1_{1..69}	ENST00000391076 ncrna:snoRNA chromosome:GRCh37:2:72987663:72987731:1 gene:ENSG00000212378 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391076 ncrna:snoRNA chromosome:GRCh37:2:72987663:72987731:1 gene:ENSG00000212378 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 72987663	 72987731	+	ENSG00000212378	ENST00000391076	NA	NA	EXOC6B	NA	chr2:72977663-72997731	inner
CUST_51583_PI429285431	5.3095274	P	4.0295434	P	2.42836283723509	0	lncRNA	55148-1_{1..1110}	hg19_lincRNAsTranscripts_TCONS_l2_00011135 range=chr17:20384566-20385774 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011135 range=chr17:20384566-20385774 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 20384566	 20385675	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34279_PI429285431	0.9125638	A	0.90321416	A	1.00650172162731	0	lncRNA	35778-1_{1..2871}	n341139|S67803|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3605|NULL|11.6500000|-0.0426414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341139|S67803|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3605|NULL|11.6500000|-0.0426414	chr11	120531027	120533897	+	NA	NA	NA	NA	GRIK4	NA	chr11:120531028-120856969	inner
CUST_14734_PI429285431	0.91828644	A	1.5830894	A	0.630774848323728	0	lncRNA	16398-1_{1..657}	lnc-PCDH10-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH10-8:1	chr4	135948353	135949009	+	lnc-PCDH10-8	lnc-PCDH10-8:1	XLOC_003697	linc-CCRN4L-14	NA	NA	NA	inter
CUST_8031_PI429285431	0.9105375	A	1.022096	A	0.92558763717674	0	lncRNA	9640-1_{1..3000}	lnc-SLC19A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SLC19A1-1:2	chr21	 46843685	 46846684	-	lnc-SLC19A1-1	lnc-SLC19A1-1:2	ENSG00000183535	NCRNA00175	COL18A1	NA	chr21:46833685-46854955	inner
CUST_21810_PI429285431	0.909023	A	0.9090897	A	0.999953768151781	0	lncRNA	23420-1_{1..3000}	lnc-TCL1B-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TCL1B-1:7	chr14	 96158268	 96161267	+	lnc-TCL1B-1	lnc-TCL1B-1:7	ENSG00000259084.1	RP11-1070N10.6	TCL1B	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80chr14:96152754-96158980"	NA	inner
CUST_46504_PI429285431	3.6932292	P	4.367196	P	0.626780933842095	0	lncRNA	50698-1_{1..1690}	"gi|336285186|ref|NR_038448.1| Homo sapiens uncharacterized LOC440288 (LOC440288), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336285186|ref|NR_038448.1| Homo sapiens uncharacterized LOC440288 (LOC440288), transcript variant 1, non-coding RNA"	Chr15	 74753606	 74755295	+	440288	NR_038448.1	NA	NA	NA	NA	NA	inter
CUST_23182_PI429285431	5.7479954	P	5.871072	P	0.918227407654433	0	lncRNA	24754-1_{1..563}	lnc-CPPED1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPPED1-3:1	chr16	 12651176	 12651738	-	lnc-CPPED1-3	lnc-CPPED1-3:1	ENSG00000259876.1	CTD-3037G24.4	SNX29	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.02;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60chr16:12641176-12661551"	NA	inner
CUST_19253_PI429285431	5.9151998	P	6.103859	P	0.87742079259372	0	lncRNA	20922-1_{1..545}	lnc-BPIFB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-BPIFB1-1:1	chr20	 31941571	 31942115	+	lnc-BPIFB1-1	lnc-BPIFB1-1:1	ENSG00000242518.2	RP5-1187J4.11	CDK5RAP1	NA	chr20:31946645-31951866	inter
CUST_51023_PI429285431	1.0445597	A	1.2428865	A	0.871560790789916	0	lncRNA	54667-4_{9001..12000}	hg19_lincRNAsTranscripts_TCONS_l2_00007045 range=chr13:19312253-19328859 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007045 range=chr13:19312253-19328859 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 19321253	 19324252	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21071_PI429285431	1.3274825	A	0.90462387	A	1.34058122129927	0	lncRNA	22697-2_{3001..5586}	lnc-TDRD7-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TDRD7-1:6	chr9	100142045	100144630	+	lnc-TDRD7-1	lnc-TDRD7-1:6	ENSG00000255036.1	RP11-23J9.4	C9orf174	NA	chr9:100129045-100139577	inner
LNCA_21_P0006998	5.1284666	P	5.4529395	P	0.798590104249267	0	lncRNA	TCONS_00018521	NA	NA	NA	NA	XLOC_008828	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008828), lincRNA [TCONS_00018521]"	chr10:57914731-57914672	hs|10q21.1	Agilent_HUMAN_G3V2	TCONS_00018521	TCONS_00018521	chr10	 57914672	 57914731	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37600_PI429285431	4.269585	P	4.9969664	P	0.603999223525627	0	lncRNA	38698-1_{1..385}	n346076|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1626|NULL|-1.2946300|-0.1619927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346076|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1626|NULL|-1.2946300|-0.1619927	chr4	  9534031	  9534415	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5779_PI429285431	1.0798333	A	0.90587	A	1.12815343855852	0	lncRNA	5701-1_{1..396}	"transcript_id ""ENST00000584594.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584594.1"" | genecode_v17"	chr17	 21422775	 21423170	+	ENSG00000265265.1	ENST00000584594.1	RP11-822E23.7	RP11-822E23.7-001	C17orf51	NA	chr17:21412775-21434530	inter
CUST_49413_PI429285431	4.6243467	P	5.0239882	P	0.758046629334226	0	lncRNA	53218-2_{3001..5668}	hg19_lincRNAsTranscripts_TCONS_l2_00023260 range=chr5:175570100-175598721 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023260 range=chr5:175570100-175598721 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175573100	175575767	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80"	NA	inter
CUST_21860_PI429285431	1.0880435	A	1.9960489	A	0.532921373308322	0	lncRNA	23470-1_{1..1806}	lnc-DLC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DLC1-1:1	chr8	 13462046	 13463851	-	lnc-DLC1-1	lnc-DLC1-1:1	ENSG00000255069.1	RP11-145O15.3	NA	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00"	NA	inter
CUST_14241_PI429285431	0.91308737	A	0.90343434	A	1.00671340508006	0	lncRNA	15899-1_{1..1692}	lnc-CCDC54-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC54-2:8	chr3	107010609	107012300	+	lnc-CCDC54-2	lnc-CCDC54-2:8	XLOC_002746	linc-CCDC54	NA	NA	NA	inter
CUST_49005_PI429285431	8.253968	P	8.446868	P	0.874845402466674	0	lncRNA	52836-1_{1..2584}	hg19_lincRNAsTranscripts_TCONS_l2_00019733 range=chr3:197344824-197354746 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019733 range=chr3:197344824-197354746 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	197344824	197347407	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17727_PI429285431	0.9224908	A	0.91003424	A	1.00867161191467	0	lncRNA	19458-1_{1..1079}	lnc-RBM26-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RBM26-1:1	chr13	 80003530	 80004608	-	lnc-RBM26-1	lnc-RBM26-1:1	XLOC_010666	linc-RBM26-5	NA	NA	NA	inter
CUST_19081_PI429285431	1.2298278	A	2.0724044	A	0.557646742689877	0	lncRNA	20772-1_{1..572}	lnc-CHST1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHST1-5:3	chr11	 45563994	 45564565	-	lnc-CHST1-5	lnc-CHST1-5:3	ENSG00000254746	RP11-958J22.1	NA	NA	NA	inter
CUST_43827_PI429285431	0.9212428	A	0.9109192	A	1.00718143796377	0	lncRNA	48551-1_{1..1392}	"gi|224465255|ref|NR_027097.1| Homo sapiens uncharacterized LOC100271832 (LOC100271832), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224465255|ref|NR_027097.1| Homo sapiens uncharacterized LOC100271832 (LOC100271832), non-coding RNA"	Chr2	 33152194	 33153585	+	100271832	NR_027097.1	NA	NA	NA	NA	NA	inter
CUST_9099_PI429285431	1.0919636	A	1.3815229	A	0.818151941232798	0	lncRNA	10620-2_{3001..3746}	lnc-ZNF708-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF708-1:1	chr19	 21611886	 21612631	-	lnc-ZNF708-1	lnc-ZNF708-1:1	ENSG00000196686	ENST00000341265	ZNF493	"hg19_refFlat_ZNF493:range=chr19:21580040-216077865'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-216077865'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_ZNF493:range=chr19:21605846-216077865'pad=0,hg19_refFlat_ZNF493:range=chr19:21605846-216077865'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF431:range=chr19:21324987-213668375'pad=0,hg19_refFlat_ZNF431:range=chr19:21324987-213668375'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70chr19:21598886-21610297"	NA	inner
CUST_44560_PI429285431	9.404371	P	7.585325	P	3.52847796370453	0	lncRNA	49143-2_{3001..3705}	"gi|375268725|ref|NR_046318.1| Homo sapiens ectodermal-neural cortex 1 (with BTB-like domain) (ENC1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|375268725|ref|NR_046318.1| Homo sapiens ectodermal-neural cortex 1 (with BTB-like domain) (ENC1), transcript variant 5, non-coding RNA"	Chr5	 73926231	 73926935	-	8507	NR_046318.1	NA	NA	NA	NA	NA	inter
CUST_51123_PI429285431	4.566278	P	4.7019825	P	0.910225241866489	0	lncRNA	54756-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00007025 range=chr13:114053727-114064046 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007025 range=chr13:114053727-114064046 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	114059727	114062726	+	NA	NA	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20"	NA	inter
CUST_9178_PI429285431	0.91860485	A	1.6081978	A	0.620028763655416	0	lncRNA	10694-1_{1..3000}	lnc-NDUFV1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDUFV1-2:1	chr11	 67547802	 67550801	+	lnc-NDUFV1-2	lnc-NDUFV1-2:1	ENSG00000248509	XLOC_009180	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00"	NA	inter
CUST_35612_PI429285431	5.152395	P	5.6158447	P	0.72525000224412	0	lncRNA	37025-1_{1..1083}	n342750|BC020770|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5253|NULL|3.2000600|-0.0966054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342750|BC020770|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5253|NULL|3.2000600|-0.0966054	chr11	  5699549	  5700631	-	NA	NA	NA	NA	OR52E4	NA	chr11:5895190-5906461	inner
LNCA_21_P0008787	2.6189914	A	0.9573356	A	3.16379429266415	0	lncRNA	TCONS_00023798	NA	NA	NA	NA	XLOC_011591	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011591), lincRNA [TCONS_00023798]"	chr15:95635270-95635211	hs|15q26.2	Agilent_HUMAN_G3V2	TCONS_00023798	TCONS_00023798	chr15	 95635211	 95635270	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10128_PI429285431	0.9242928	A	0.9162676	A	1.0055781449892	0	lncRNA	11652-2_{3001..6000}	lnc-GALNTL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GALNTL2-1:1	chr3	 16281167	 16284166	+	lnc-GALNTL2-1	lnc-GALNTL2-1:1	XLOC_002585	linc-OXNAD1	GALNTL2	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-16.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr3:16268167-16271253"	NA	inter
CUST_27995_PI429285431	1.032008	A	0.921082	A	1.07992116613319	0	lncRNA	29604-1_{1..3000}	n325249|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328656|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328656|0.2747500|-0.2878244	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325249|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328656|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328656|0.2747500|-0.2878244	chr2	 75008873	 75011872	+	NA	NA	NA	NA	HK2	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40chr2:74998873-75023659"	NA	inter
CUST_43539_PI429285431	2.2449217	A	3.294382	P	0.483148872562202	0	lncRNA	48322-1_{1..3000}	"gi|388490238|ref|NR_049773.1| Homo sapiens KIAA1324 (KIAA1324), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388490238|ref|NR_049773.1| Homo sapiens KIAA1324 (KIAA1324), transcript variant 4, non-coding RNA"	Chr1	109656585	109659584	+	57535	NR_049773.1	NA	NA	NA	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	inter
CUST_32416_PI429285431	6.5724363	P	7.030962	P	0.727729550648496	0	lncRNA	34092-1_{1..360}	n339011|AF527735|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1440|NULL|-1.0730200|-0.0954005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339011|AF527735|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1440|NULL|-1.0730200|-0.0954005	chr16	   819118	   819477	-	NA	NA	NA	NA	MSLNL	NA	chr16:819428-829443	inter
CUST_16329_PI429285431	0.92735416	A	1.5666188	A	0.642040121403003	0	lncRNA	18030-1_{1..493}	lnc-IRS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRS2-1:1	chr13	110054378	110054870	-	lnc-IRS2-1	lnc-IRS2-1:1	XLOC_010718	linc-LIG4-1	NA	NA	NA	inter
CUST_33112_PI429285431	1.6127299	A	1.9958978	A	0.766752090486689	0	lncRNA	34711-2_{3001..4761}	n339800|AL832590|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2247|NULL|-1.1840500|-0.3057429	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339800|AL832590|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2247|NULL|-1.1840500|-0.3057429	chr18	 13517518	 13519278	+	NA	NA	NA	NA	C18orf1	NA	chr18:13504518-13532887	inner
CUST_47611_PI429285431	0.9852555	A	0.92412174	A	1.04328531762686	0	lncRNA	51608-1_{1..817}	"gi|148225708|ref|NR_003539.1| Homo sapiens bromodomain, testis-specific pseudogene (LOC643486), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|148225708|ref|NR_003539.1| Homo sapiens bromodomain, testis-specific pseudogene (LOC643486), non-coding RNA"	ChrX	 95592085	 95592901	-	643486	NR_003539.1	NA	NA	NA	NA	NA	inter
CUST_8165_PI429285431	3.2039053	P	0.9610225	A	4.73341954329959	0	lncRNA	9767-1_{1..1840}	lnc-RP11-144F15.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-144F15.1.1-1:1	chr12	106856267	106858106	-	lnc-RP11-144F15.1.1-1	lnc-RP11-144F15.1.1-1:1	ENSG00000250518	ENST00000512615	POLR3B	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10chr12:106846267-106866449"	NA	inner
CUST_12747_PI429285431	4.3264413	P	4.4126353	P	0.942004593508964	0	lncRNA	14372-1_{1..2299}	lnc-JAM3-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-JAM3-3:2	chr11	133909657	133911955	+	lnc-JAM3-3	lnc-JAM3-3:2	XLOC_009341	linc-JAM3-2	NA	NA	NA	inter
CUST_52056_PI429285431	0.9465752	A	0.941772	A	1.00333487289432	0	lncRNA	55587-1_{1..1171}	hg19_lincRNAsTranscripts_TCONS_l2_00017094 range=chr21:45894774-45897323 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017094 range=chr21:45894774-45897323 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr21	 45894774	 45895944	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15529_PI429285431	0.94670415	A	0.93033105	A	1.01141361195607	0	lncRNA	17214-1_{1..512}	lnc-PLCXD3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLCXD3-1:3	chr5	 41293250	 41293761	-	lnc-PLCXD3-1	lnc-PLCXD3-1:3	XLOC_004799	linc-C6	NA	"hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70"	NA	inter
CUST_15971_PI429285431	0.9663497	A	1.63456	A	0.629286849644688	0	lncRNA	17669-1_{1..427}	lnc-PARN-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PARN-5:3	chr16	 14114790	 14115216	-	lnc-PARN-5	lnc-PARN-5:3	XLOC_011881	linc-CPPED1-6	NA	NA	NA	inter
CUST_50925_PI429285431	0.9155541	A	1.0457367	A	0.913715795112728	0	lncRNA	54566-2_{3001..5042}	hg19_lincRNAsTranscripts_TCONS_l2_00005549 range=chr12:19189967-19201653 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005549 range=chr12:19189967-19201653 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 19192967	 19195008	+	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10"	NA	inter
CUST_26787_PI429285431	4.8007116	P	4.9822083	P	0.881787725581421	0	lncRNA	28293-5_{12001..15000}	n323846|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057239|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057239|3.8963400|-0.3476478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323846|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057239|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057239|3.8963400|-0.3476478	chrX	 72969215	 72972214	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_SEPHS1:range=chr10:13361142-133869505'pad=0,hg19_refFlat_SEPHS1:range=chr10:13361142-133869505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_CASP7:range=chr10:115451731-1154892995'pad=0,hg19_refFlat_CASP7:range=chr10:115451731-1154892995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30"	NA	inter
CUST_5410_PI429285431	7.348222	P	7.496785	P	0.902148602608895	0	lncRNA	5344-1_{1..677}	"transcript_id ""ENST00000574387.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000574387.1"" | genecode_v17"	chr16	  3128321	  3128997	-	ENSG00000262370.1	ENST00000574387.1	RP11-473M20.9	RP11-473M20.9-003	ZSCAN10	NA	chr16:3138895-3142861	inter
CUST_34295_PI429285431	4.0939293	P	4.0510116	P	1.030195183416	0	lncRNA	35793-1_{1..1934}	n341155|AX747861|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3621|NULL|-0.9703870|-0.2325790	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341155|AX747861|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3621|NULL|-0.9703870|-0.2325790	chr11	128551134	128553067	-	NA	NA	NA	NA	FLI1	NA	chr11:128563811-128566817	inner
CUST_1622_PI429285431	1.8863844	A	1.554314	A	1.25881859928416	0	lncRNA	1608-1_{1..432}	"transcript_id ""ENST00000455796.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455796.1"" | genecode_v17"	chr3	194489535	194489966	+	ENSG00000244576.1	ENST00000455796.1	AC090505.3	AC090505.3-001	NA	NA	NA	inter
CUST_3121_PI429285431	0.93078244	A	0.89862424	A	1.02254065206151	0	lncRNA	3100-1_{1..157}	"transcript_id ""ENST00000520881.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520881.1"" | genecode_v17"	chr8	 58405458	 58405614	+	ENSG00000253821.1	ENST00000520881.1	RP11-246K15.1	RP11-246K15.1-002	NA	NA	NA	inter
LNCA_21_P0012600	0.93360144	A	1.2797308	A	0.786691903053009	0	lncRNA	TCONS_l2_00020647	NA	NA	NA	NA	XLOC_l2_010751	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010751), lincRNA [TCONS_l2_00020647]"	chr4:90605762-90605821	hs|4q22.1	Agilent_HUMAN_G3V2	TCONS_l2_00020647	TCONS_l2_00020647	chr4	 90605762	 90605821	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25853_PI429285431	2.703119	A	3.0242493	A	0.800442513762878	0	lncRNA	27374-1_{1..414}	lnc-TGIF1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TGIF1-2:1	chr18	  3596577	  3596990	+	lnc-TGIF1-2	lnc-TGIF1-2:1	ENSG00000177337.3	RP11-874J12.2	DLGAP1	NA	chr18:3586577-3606806	inner
LNCA_21_P0011958	2.0637133	A	2.8257663	A	0.589656633634551	0	lncRNA	TCONS_l2_00014848	NA	NA	NA	NA	XLOC_l2_008221	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008221), lincRNA [TCONS_l2_00014848]"	chr2:114647172-114632834	hs|2q14.1	Agilent_HUMAN_G3V2	TCONS_l2_00014848	TCONS_l2_00014848	chr2	114632834	114647172	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26817_PI429285431	0.91992456	A	1.512562	A	0.663129508591344	0	lncRNA	28330-1_{1..478}	n323886|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056291|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056291|-1.2298400|-0.3649640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323886|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056291|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056291|-1.2298400|-0.3649640	chrX	 41792079	 41792556	-	NA	NA	NA	NA	CASK	NA	chrX:41782079-41782287	inter
CUST_26830_PI429285431	0.9111122	A	0.90789443	A	1.00223287736922	0	lncRNA	28346-1_{1..3000}	n323903|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056029|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056029|0.3319580|-0.3342359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323903|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056029|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056029|0.3319580|-0.3342359	chrX	 21821638	 21824637	+	NA	NA	NA	NA	NA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60"	NA	inter
CUST_13558_PI429285431	1.4805396	A	1.1009872	A	1.30093817327124	0	lncRNA	15199-1_{1..493}	lnc-CCDC125-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC125-7:1	chr5	 67740558	 67741050	-	lnc-CCDC125-7	lnc-CCDC125-7:1	XLOC_004858	linc-CD180-8	NA	NA	NA	inter
CUST_24332_PI429285431	0.92788017	A	0.9271231	A	1.00052489864709	0	lncRNA	25885-1_{1..868}	lnc-C1orf96-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C1orf96-1:2	chr1	229406723	229407590	-	lnc-C1orf96-1	lnc-C1orf96-1:2	ENSG00000177788.5	RP5-1061H20.4	RAB4A	NA	chr1:229406879-229416750	inter
CUST_18556_PI429285431	5.568079	P	5.767261	P	0.871044300544842	0	lncRNA	20267-1_{1..2155}	lnc-RP11-706O15.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-706O15.1.1-1:1	chrX	  3799806	  3801960	-	lnc-RP11-706O15.1.1-1	lnc-RP11-706O15.1.1-1:1	ENSG00000234449	RP11-706O15.3	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70"	NA	inter
CUST_30508_PI429285431	12.239529	P	12.468158	P	0.85344553990547	0	lncRNA	32288-1_{1..595}	n335664|CR613149|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000292344_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000292344_03|1.2209900|-0.0768349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335664|CR613149|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000292344_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000292344_03|1.2209900|-0.0768349	chr8	145537785	145538379	+	NA	NA	NA	NA	DGAT1	NA	chr8:145538247-145548380	inner
CUST_23230_PI429285431	2.6383297	A	2.6694932	A	0.978630736317948	0	lncRNA	24802-1_{1..566}	lnc-C2orf42-3:21	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:21	chr2	 70313256	 70313821	-	lnc-C2orf42-3	lnc-C2orf42-3:21	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_40164_PI429285431	3.253049	P	2.4313884	A	1.76743921579864	0	lncRNA	41000-1_{1..2049}	n407879|NR_027439|lncRNA|Homosapiens||RefGeneNoncode|NR_027439||3.7345200|-0.1782833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407879|NR_027439|lncRNA|Homosapiens||RefGeneNoncode|NR_027439||3.7345200|-0.1782833	chr5	 68926979	 68929027	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.02;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60"	NA	inter
CUST_5221_PI429285431	0.91155654	A	0.91319025	A	0.998868239444253	0	lncRNA	5162-1_{1..826}	"transcript_id ""ENST00000558633.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558633.1"" | genecode_v17"	chr15	 69755365	 69756190	+	ENSG00000245750.3	ENST00000558633.1	RP11-279F6.1	RP11-279F6.1-005	RPLP1	NA	chr15:69745365-69747884	inter
CUST_9367_PI429285431	3.7616482	P	4.505642	P	0.597084159508432	0	lncRNA	10868-1_{1..1606}	lnc-SAP30-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SAP30-2:2	chr4	174431483	174433088	+	lnc-SAP30-2	lnc-SAP30-2:2	XLOC_003782	linc-KIAA1712-5	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40"	NA	inter
CUST_44304_PI429285431	4.575017	P	3.685771	P	1.85220784588058	0	lncRNA	48937-1_{1..2167}	"gi|338753365|ref|NR_033752.2| Homo sapiens NmrA-like family domain containing 1 pseudogene (LOC344887), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338753365|ref|NR_033752.2| Homo sapiens NmrA-like family domain containing 1 pseudogene (LOC344887), non-coding RNA"	Chr3	185677758	185679924	+	344887	NR_033752.2	NA	NA	NA	NA	NA	inter
CUST_47402_PI429285431	4.335761	P	5.136803	P	0.57393449819896	0	lncRNA	51445-2_{3001..4622}	"gi|224028235|ref|NR_026961.1| Homo sapiens uncharacterized LOC284837 (LOC284837), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224028235|ref|NR_026961.1| Homo sapiens uncharacterized LOC284837 (LOC284837), non-coding RNA"	Chr21	 45228639	 45230260	-	284837	NR_026961.1	NA	NA	NA	NA	NA	inter
CUST_40123_PI429285431	3.4713538	P	3.8803642	P	0.753139804115327	0	lncRNA	40964-1_{1..1790}	n407668|NR_027138|lncRNA|Homosapiens||RefGeneNoncode|NR_027138||4.0595500|-0.1242127	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407668|NR_027138|lncRNA|Homosapiens||RefGeneNoncode|NR_027138||4.0595500|-0.1242127	chr11	  3239561	  3241350	+	NA	NA	NA	NA	MRGPRE	"hg19_refFlat_MRGPRG:range=chr11:3239174-32400435'pad=0,hg19_refFlat_MRGPRG:range=chr11:3239174-32400435'pad=0 3'pad=0 strand=- repeatMasking=none,-105.00chr11:3249041-3253616"	NA	inter
CUST_12624_PI429285431	0.9043818	A	2.8453288	A	0.260445425007948	0	lncRNA	14239-1_{1..782}	lnc-HEXB-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-HEXB-1:5	chr5	 73624048	 73624829	+	lnc-HEXB-1	lnc-HEXB-1:5	XLOC_004429	linc-HEXB-1	NA	NA	NA	inter
LNCA_21_P0001172	3.7466822	P	3.4473782	P	1.23055061505145	0	lncRNA	ENST00000450546	NA	NA	NA	NA	XLOC_000991	NA	ENST00000450546	NA	NA	"BROAD Institute lincRNA (XLOC_000991), lincRNA [TCONS_00000627]"	chr1:121315813-121315754	hs|1p11.2	Agilent_HUMAN_G3V2	ENST00000450546	ENST00000450546	chr1	121315754	121315813	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007925	0.96062845	A	0.92168593	A	1.02736050636357	0	lncRNA	ENST00000425800	NA	NA	NA	NA	XLOC_010310	NA	ENST00000425800	NA	NA	"BROAD Institute lincRNA (XLOC_010310), lincRNA [TCONS_00021530]"	chr13:24076954-24077013	hs|13q12.12	Agilent_HUMAN_G3V2	ENST00000425800	ENST00000425800	chr13	 24076954	 24077013	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14168_PI429285431	0.9277219	A	0.90596646	A	1.01519399458166	0	lncRNA	15820-1_{1..591}	lnc-PIRT-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIRT-2:1	chr17	 10694855	 10695445	-	lnc-PIRT-2	lnc-PIRT-2:1	XLOC_012388	linc-TMEM220-1	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-12.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10"	NA	inter
CUST_36392_PI429285431	0.9117992	A	0.9034673	A	1.00579194180204	0	lncRNA	37610-1_{1..2538}	n344909|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_458|NULL|-1.2960800|-0.2466377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344909|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_458|NULL|-1.2960800|-0.2466377	chr6	 73983861	 73986398	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80"	NA	inter
CUST_18651_PI429285431	2.2063591	A	1.4125624	A	1.73363081207151	0	lncRNA	20354-1_{1..811}	lnc-FBXO25-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXO25-5:1	chr8	  1087299	  1088109	+	lnc-FBXO25-5	lnc-FBXO25-5:1	ENSG00000237647	CTD-3212A4.1	NA	NA	NA	inter
CUST_20395_PI429285431	7.254824	P	6.5647774	P	1.61333562940604	0	lncRNA	22036-1_{1..381}	lnc-IL15RA-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL15RA-1:2	chr10	  5987618	  5987998	-	lnc-IL15RA-1	lnc-IL15RA-1:2	ENSG00000232807.1	RP11-536K7.3	FBXO18	NA	chr10:5977618-5979556	inter
CUST_51868_PI429285431	3.8233864	P	4.2661805	P	0.735708365000947	0	lncRNA	55420-1_{1..626}	hg19_lincRNAsTranscripts_TCONS_l2_00012654 range=chr19:52206289-52207691 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012654 range=chr19:52206289-52207691 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 52206289	 52206914	+	NA	NA	NA	NA	HAS1	NA	chr19:52216365-52217691	inter
LNCA_19_P00319558	1.4973081	A	2.299147	A	0.573617562121792	0	lncRNA	ENST00000444792	NA	NA	NA	NA	XLOC_l2_008760	NA	ENST00000444792	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008760), lincRNA [TCONS_l2_00016849]"	chr20:11275347-11275288	hs|20p12.2	Agilent_HUMAN_G3V2	ENST00000444792	ENST00000444792	chr20	 11275288	 11275347	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3785_PI429285431	0.90183496	A	0.8961233	A	1.00396686830148	0	lncRNA	3753-1_{1..463}	"transcript_id ""ENST00000449761.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449761.1"" | genecode_v17"	chr10	107900022	107900484	+	ENSG00000229775.2	ENST00000449761.1	RP11-298H24.1	RP11-298H24.1-001	NA	NA	NA	inter
CUST_24569_PI429285431	0.9099349	A	1.0090909	A	0.933578990664619	0	lncRNA	26117-1_{1..467}	lnc-CDC14A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDC14A-1:1	chr1	100810448	100810914	+	lnc-CDC14A-1	lnc-CDC14A-1:1	ENSG00000223906.1	RP5-837M10.2	CDC14A	NA	chr1:100800448-100820798	inter
LNCA_21_P0007326	3.2297733	P	3.484151	P	0.838348674608259	0	lncRNA	TCONS_00019591	NA	NA	NA	NA	XLOC_009392	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009392), lincRNA [TCONS_00019591]"	chr11:22501626-22467262	hs|11p14.3	Agilent_HUMAN_G3V2	TCONS_00019591	TCONS_00019591	chr11	 22467262	 22501626	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14201_PI429285431	1.2843239	A	0.90874964	A	1.29735586010607	0	lncRNA	15854-2_{3001..4768}	lnc-C5orf32-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C5orf32-1:7	chr5	139555892	139557659	+	lnc-C5orf32-1	lnc-C5orf32-1:7	XLOC_004577	linc-C5orf32-1	C5orf32	NA	chr5:139554653-139563608	inter
CUST_29653_PI429285431	6.26456	P	6.8335114	P	0.674106574082502	0	lncRNA	31415-1_{1..273}	n333267|AY007210|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083106|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083106|0.2550420|-0.1398492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333267|AY007210|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083106|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083106|0.2550420|-0.1398492	chr9	130565518	130565790	+	NA	NA	NA	NA	FPGS	NA	chr9:130565154-130576556	inner
CUST_12210_PI429285431	0.9230892	A	0.91764474	A	1.00378094189356	0	lncRNA	13812-1_{1..468}	lnc-ADAMTS16-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAMTS16-1:7	chr5	  5067016	  5067483	+	lnc-ADAMTS16-1	lnc-ADAMTS16-1:7	XLOC_004269	linc-ADAMTS16-1	NA	NA	NA	inter
LNCA_21_P0001510	0.9270045	A	0.9103154	A	1.01163517070364	0	lncRNA	TCONS_00001503	NA	NA	NA	NA	XLOC_000845	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000845), lincRNA [TCONS_00001503]"	chr1:56840895-56798041	hs|1p32.2	Agilent_HUMAN_G3V2	TCONS_00001503	TCONS_00001503	chr1	 56798041	 56840895	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18770_PI429285431	1.0588537	A	1.951096	A	0.538776077716579	0	lncRNA	20466-1_{1..1796}	lnc-C11orf89-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C11orf89-2:8	chr11	  2017973	  2019768	-	lnc-C11orf89-2	lnc-C11orf89-2:8	ENSG00000130600	H19	NA	NA	NA	inter
LNCA_21_P0005504	0.925963	A	0.9092327	A	1.01166406105329	0	lncRNA	TCONS_00013857	NA	NA	NA	NA	XLOC_006488	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006488), lincRNA [TCONS_00013857]"	chr7:67998012-67997953	hs|7q11.22	Agilent_HUMAN_G3V2	TCONS_00013857	TCONS_00013857	chr7	 67997953	 67998012	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14690_PI429285431	1.3242282	A	1.3157772	A	1.00587497720562	0	lncRNA	16359-1_{1..406}	lnc-KCTD15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCTD15-1:1	chr19	 34287334	 34287739	+	lnc-KCTD15-1	lnc-KCTD15-1:1	XLOC_013044	linc-KCTD15	KCTD15	NA	chr19:34287751-34297633	inter
LNCA_33_P3337405	2.8287475	A	1.8225695	A	2.00858289054559	0	lncRNA	XR_110395	XR_110395	XR_110395	   440993	Hs.708999	LOC440993	uncharacterized LOC440993	ENST00000445707	THC2474701	NA	"PREDICTED: Homo sapiens hypothetical LOC440993 (LOC440993), miscRNA [XR_110395]"	chr3:195435359-195435418	hs|3q29	Agilent_HUMAN_G3V2	XR_110395	XR_110395	chr3	195435359	195435418	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50771_PI429285431	8.020142	P	8.525699	P	0.704388372704454	0	lncRNA	54430-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00004572 range=chr11:65266529-65274354 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004572 range=chr11:65266529-65274354 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65269529	 65272528	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39929_PI429285431	1.1416721	A	0.99411505	A	1.10769220141901	0	lncRNA	40807-1_{1..1553}	n406793|NR_024240_6|lncRNA|Homosapiens||RefGeneNoncode|NR_024240_6||-1.1730200|-0.3875784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406793|NR_024240_6|lncRNA|Homosapiens||RefGeneNoncode|NR_024240_6||-1.1730200|-0.3875784	chr6	  1355611	  1357163	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31888_PI429285431	3.8586454	P	3.7871032	P	1.05083940089638	0	lncRNA	33620-1_{1..1086}	n338443|BC067103|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|840|NULL|2.8991100|-0.1876721	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n338443|BC067103|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|840|NULL|2.8991100|-0.1876721	chr14	 89883697	 89884782	+	NA	NA	NA	NA	FOXN3	NA	chr14:89873697-89896137	inner
CUST_38332_PI429285431	0.9196262	A	1.9365866	A	0.494156389479294	0	lncRNA	39378-1_{1..583}	n382048|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ven.1||-1.0239400|-0.3347956	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382048|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ven.1||-1.0239400|-0.3347956	chr13	 50795408	 50795990	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48387_PI429285431	3.6687186	P	4.487227	P	0.567027888881229	0	lncRNA	52240-1_{1..205}	hg19_lincRNAsTranscripts_TCONS_l2_00000487 range=chr1:111794402-111795135 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000487 range=chr1:111794402-111795135 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	111794402	111794606	+	NA	NA	NA	NA	CHI3L2	NA	chr1:111784402-111786062	inter
CUST_49987_PI429285431	1.9217628	A	2.0490108	A	0.915576284867941	0	lncRNA	53726-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026978 range=chr7:150885762-150902611 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026978 range=chr7:150885762-150902611 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	150885762	150888761	-	NA	NA	NA	NA	ABCF2	NA	chr7:150904923-150912611	inter
CUST_48747_PI429285431	0.8938453	A	0.89027435	A	1.00247825974588	0	lncRNA	52584-2_{3001..3970}	hg19_lincRNAsTranscripts_TCONS_l2_00014911 range=chr2:132783681-132796342 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014911 range=chr2:132783681-132796342 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	132786681	132787650	-	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30"	NA	inter
CUST_3307_PI429285431	4.298985	P	4.6521344	P	0.782873220691648	0	lncRNA	3286-1_{1..290}	"transcript_id ""ENST00000521586.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521586.1"" | genecode_v17"	chr8	128351519	128351808	+	ENSG00000253929.1	ENST00000521586.1	RP11-382A18.2	RP11-382A18.2-001	NA	NA	NA	inter
CUST_1670_PI429285431	1.0992228	A	1.0292274	A	1.04971333663087	0	lncRNA	1655-1_{1..2549}	"transcript_id ""ENST00000511079.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511079.1"" | genecode_v17"	chr4	   124386	   126934	+	ENSG00000250312.2	ENST00000511079.1	ZNF718	ZNF718-004	ZNF718	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20chr4:124420-156491"	NA	inner
CUST_7219_PI429285431	0.8978132	A	0.8928663	A	1.00343481529233	0	lncRNA	7702-1_{1..293}	"transcript_id ""ENST00000517248.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517248.1"" | genecode_v17"	chr5	111055466	111055758	-	ENSG00000253057.1	ENST00000517248.1	RN7SKP57	RN7SKP57-201	C5orf13	NA	chr5:111065000-111065758	inter
CUST_29548_PI429285431	9.618285	P	9.7561455	P	0.908865994117064	0	lncRNA	31308-1_{1..515}	n333028|AF161446|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072175|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072175|4.0236300|-0.2546615	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333028|AF161446|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072175|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072175|4.0236300|-0.2546615	chr14	 94545626	 94546140	-	NA	NA	NA	NA	DDX24	NA	chr14:94535626-94547558	inner
CUST_32045_PI429285431	7.6885962	P	7.9847465	P	0.814422712074962	0	lncRNA	33759-1_{1..463}	n338606|U82313|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1012|NULL|1.6631500|-0.2846408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338606|U82313|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1012|NULL|1.6631500|-0.2846408	chr13	 26545851	 26546313	-	NA	NA	NA	NA	ATP8A2	NA	chr13:26535851-26556315	inner
CUST_30846_PI429285431	0.9273918	A	0.9298215	A	0.998317277662873	0	lncRNA	32634-1_{1..245}	n336823|AB233423|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330032|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330032|1.3377000|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336823|AB233423|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330032|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330032|1.3377000|-1.0000000	chr9	 98242821	 98243065	-	NA	NA	NA	NA	PTCH1	NA	chr9:98232821-98278885	inner
CUST_48428_PI429285431	1.6051154	A	1.5627135	A	1.02982692839196	0	lncRNA	52280-1_{1..215}	hg19_lincRNAsTranscripts_TCONS_l2_00000598 range=chr1:149640884-149666092 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000598 range=chr1:149640884-149666092 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	149640884	149641098	+	NA	NA	NA	NA	LOC100288037	NA	chr1:149671871-149672242	inter
CUST_19201_PI429285431	12.189009	P	12.337715	P	0.902059186028728	0	lncRNA	20871-1_{1..489}	lnc-C9orf103-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C9orf103-1:1	chr9	 86327413	 86327901	+	lnc-C9orf103-1	lnc-C9orf103-1:1	ENSG00000254473.1	RP11-522I20.3	UBQLN1	"hg19_refFlat_UBQLN1:range=chr9:86276702-863225945'pad=0,hg19_refFlat_UBQLN1:range=chr9:86276702-863225945'pad=0 3'pad=0 strand=- repeatMasking=none,-107.10chr9:86317413-86323168"	NA	inter
CUST_3201_PI429285431	4.7503505	P	4.8035665	P	0.963785499174483	0	lncRNA	3180-1_{1..3000}	"transcript_id ""ENST00000523871.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523871.1"" | genecode_v17"	chr8	 81447241	 81450240	-	ENSG00000254162.1	ENST00000523871.1	RP11-48B3.3	RP11-48B3.3-001	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-24.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40"	NA	inter
CUST_12670_PI429285431	1.2701066	A	0.9048293	A	1.28812919666007	0	lncRNA	14287-1_{1..3000}	lnc-SOX11-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SOX11-3:9	chr2	  6125557	  6128556	+	lnc-SOX11-3	lnc-SOX11-3:9	XLOC_001327	linc-RSAD2-2	NA	NA	NA	inter
CUST_24945_PI429285431	1.6847976	A	1.5139272	A	1.12573745448856	0	lncRNA	26485-1_{1..462}	lnc-TDRD9-AS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TDRD9-AS1-1:1	chr14	104603867	104604328	-	lnc-TDRD9-AS1-1	lnc-TDRD9-AS1-1:1	ENSG00000258748.1	CTD-2223O18.1	KIF26A	NA	chr14:104605060-104614235	inter
CUST_51086_PI429285431	3.7503674	P	3.901084	P	0.900802914311726	0	lncRNA	54724-1_{1..951}	hg19_lincRNAsTranscripts_TCONS_l2_00006860 range=chr13:53144435-53161223 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006860 range=chr13:53144435-53161223 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 53144435	 53145385	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11097_PI429285431	2.1043649	A	0.9104885	A	2.28766594682654	0	lncRNA	12652-1_{1..2600}	lnc-SNTG2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNTG2-4:1	chr2	   665531	   668130	+	lnc-SNTG2-4	lnc-SNTG2-4:1	XLOC_001309	linc-SNTG2-3	TMEM18	NA	chr2:667973-676523	inter
CUST_28643_PI429285431	1.0866928	A	0.89316994	A	1.14355270547516	0	lncRNA	30334-1_{1..552}	n326021|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047515|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047515|-1.1467300|-0.3208904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326021|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047515|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047515|-1.1467300|-0.3208904	chr10	 33425190	 33425741	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46422_PI429285431	2.343513	A	2.426165	A	0.94432017607785	0	lncRNA	50634-2_{3001..3590}	"gi|310123203|ref|XR_110299.1| PREDICTED: Homo sapiens uncharacterized LOC100506948 (LOC100506948), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310123203|ref|XR_110299.1| PREDICTED: Homo sapiens uncharacterized LOC100506948 (LOC100506948), misc_RNA"	NA	NA	NA	NA	NA	XR_110299.1	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-21.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-17.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30"	NA	Unknown
CUST_27188_PI429285431	1.0172664	A	1.2292295	A	0.863361640605763	0	lncRNA	28728-1_{1..573}	n324317|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042974|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042974|-1.1488900|-0.3725872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324317|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042974|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042974|-1.1488900|-0.3725872	chr6	161272101	161272673	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-60.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40"	NA	inter
CUST_29153_PI429285431	4.458928	P	4.4052052	P	1.03793982121172	0	lncRNA	30896-1_{1..1085}	n326664|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000010344|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000010344|-0.9487800|-0.2075502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326664|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000010344|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000010344|-0.9487800|-0.2075502	chr1	 29069581	 29070665	-	NA	NA	NA	NA	YTHDF2	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_YTHDF2:range=chr1:29063633-290954645'pad=0,hg19_refFlat_YTHDF2:range=chr1:29063633-290954645'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_YTHDF2:range=chr1:29068933-290954645'pad=0,hg19_refFlat_YTHDF2:range=chr1:29068933-290954645'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10chr1:29063133-29086435"	NA	inner
LNCA_32_P45974	2.5752387	A	2.249296	A	1.25348323444042	0	lncRNA	XR_133543	XR_133543	XR_133543	100134167	Hs.655680	LOC100134167	uncharacterized protein C2orf27-like	NA	THC2500237	NA	"PREDICTED: Homo sapiens uncharacterized protein C2orf27-like (LOC100134167), miscRNA [XR_133543]"	chr4_gl000194_random:10637-10578	NA	Agilent_HUMAN_G3V2	XR_133543	XR_133543	chr4_gl000194_random	    10578	    10637	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7705_PI429285431	0.9147601	A	1.3958874	A	0.71641760740137	0	lncRNA	9338-1_{1..3000}	lnc-CCDC57-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC57-1:1	chr17	 80173574	 80176573	-	lnc-CCDC57-1	lnc-CCDC57-1:1	ENSG00000248630	XLOC_012590	CCDC57	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-56.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90chr17:80163574-80170689"	NA	inter
CUST_24780_PI429285431	2.07044	A	1.4776096	A	1.50820276532315	0	lncRNA	26323-1_{1..547}	lnc-ITGB3BP-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITGB3BP-1:3	chr1	 63787987	 63788533	-	lnc-ITGB3BP-1	lnc-ITGB3BP-1:3	ENSG00000230798.1	RP4-792G4.2	FOXD3	NA	chr1:63788730-63790797	inter
CUST_30171_PI429285431	4.196444	P	4.8217425	P	0.648285630277162	0	lncRNA	31945-1_{1..520}	n334863|AJ315537|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247165_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247165_07|0.5883220|-0.1797410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334863|AJ315537|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247165_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247165_07|0.5883220|-0.1797410	chr6	  3026026	  3026545	+	NA	NA	NA	NA	NQO2	NA	chr6:3016026-3019994	inter
CUST_3529_PI429285431	5.0084944	P	5.1101522	P	0.931961459656073	0	lncRNA	3498-1_{1..509}	"transcript_id ""ENST00000416507.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416507.1"" | genecode_v17"	chr9	118774640	118775148	+	ENSG00000228707.1	ENST00000416507.1	RP11-787B4.2	RP11-787B4.2-001	NA	NA	NA	inter
CUST_40672_PI429285431	5.546529	P	5.9593754	P	0.751139931134126	0	lncRNA	41406-1_{1..1057}	n410227|NR_037170_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037170_4||-1.0025100|-0.1866741	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410227|NR_037170_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037170_4||-1.0025100|-0.1866741	chr6	  3435316	  3436372	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3425316-3446880	inner
CUST_51269_PI429285431	0.9073304	A	0.9038779	A	1.00239595636782	0	lncRNA	54875-1_{1..1649}	hg19_lincRNAsTranscripts_TCONS_l2_00008496 range=chr15:29033890-29044556 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008496 range=chr15:29033890-29044556 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 29033890	 29035538	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4104_PI429285431	0.91342646	A	0.915905	A	0.998283481892345	0	lncRNA	4065-1_{1..666}	"transcript_id ""ENST00000532961.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532961.1"" | genecode_v17"	chr11	123539207	123539872	+	ENSG00000254467.1	ENST00000532961.1	RP11-634B22.4	RP11-634B22.4-001	NA	NA	NA	inter
CUST_5723_PI429285431	2.2736223	A	2.4072042	A	0.911565418427854	0	lncRNA	5647-1_{1..457}	"transcript_id ""ENST00000579367.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579367.1"" | genecode_v17"	chr17	 10671490	 10671946	-	ENSG00000264016.2	ENST00000579367.1	CTC-297N7.9	CTC-297N7.9-002	NA	NA	NA	inter
CUST_10576_PI429285431	0.9090273	A	0.9061731	A	1.00198033896902	0	lncRNA	12108-1_{1..771}	lnc-RHOBTB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RHOBTB1-1:1	chr10	 62927311	 62928081	-	lnc-RHOBTB1-1	lnc-RHOBTB1-1:1	XLOC_008832	linc-RHOBTB1	NA	NA	NA	inter
LNCA_21_P0012209	0.9273734	A	0.91574043	A	1.00809595680055	0	lncRNA	ENST00000507941	NA	BC127901	NA	Hs.558645	XLOC_l2_008975	NA	ENST00000507941	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008975), lincRNA [TCONS_l2_00017318]"	chr21:14418410-14418469	hs|21q11.2	Agilent_HUMAN_G3V2	ENST00000507941	ENST00000507941	chr21	 14418410	 14418469	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42118_PI429285431	0.9180214	A	1.0064483	A	0.940547753990398	0	lncRNA	44091-1_{1..73}	ENST00000386972 ncrna:miRNA chromosome:GRCh37:19:13947101:13947173:-1 gene:ENSG00000209707 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000386972 ncrna:miRNA chromosome:GRCh37:19:13947101:13947173:-1 gene:ENSG00000209707 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 13947101	 13947173	-	ENSG00000209707	ENST00000386972	NA	NA	ZSWIM4	NA	chr19:13937101-13943044	inter
CUST_446_PI429285431	8.912624	P	9.039734	P	0.915663867875342	0	lncRNA	438-1_{1..381}	"transcript_id ""ENST00000427732.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427732.1"" | genecode_v17"	chr1	148246959	148247339	-	ENSG00000236140.1	ENST00000427732.1	RP11-89F3.2	RP11-89F3.2-001	NA	NA	NA	inter
CUST_39959_PI429285431	3.4873157	P	3.0041947	A	1.39776419854896	0	lncRNA	40830-1_{1..3000}	n407002|NR_024499|lncRNA|Homosapiens||RefGeneNoncode|NR_024499||-0.9907780|-0.2599502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407002|NR_024499|lncRNA|Homosapiens||RefGeneNoncode|NR_024499||-0.9907780|-0.2599502	chrX	146990948	146993947	-	NA	NA	NA	NA	FMR1	"hg19_refFlat_FMR1:range=chrX:146993698-1470303645'pad=0,hg19_refFlat_FMR1:range=chrX:146993698-1470303645'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60;hg19_refFlat_FMR1:range=chrX:146993698-1470303505'pad=0,hg19_refFlat_FMR1:range=chrX:146993698-1470303505'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60chrX:146993469-147013676"	NA	inter
CUST_10337_PI429285431	0.92460066	A	0.9144937	A	1.00703020752431	0	lncRNA	11866-1_{1..264}	lnc-EVX1-14:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EVX1-14:1	chr7	 27448428	 27448691	+	lnc-EVX1-14	lnc-EVX1-14:1	XLOC_006028	linc-TAX1BP1	NA	NA	NA	inter
CUST_44570_PI429285431	4.781474	P	5.566982	P	0.580147640349856	0	lncRNA	49152-1_{1..2249}	"gi|300796467|ref|NR_034122.1| Homo sapiens uncharacterized LOC100131067 (LOC100131067), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300796467|ref|NR_034122.1| Homo sapiens uncharacterized LOC100131067 (LOC100131067), transcript variant 2, non-coding RNA"	Chr5	 80533384	 80535632	-	100131067	NR_034122.1	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00"	NA	inter
CUST_18746_PI429285431	7.8681297	P	8.828416	P	0.513954909863797	0	lncRNA	20442-1_{1..2421}	lnc-SMUG1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-SMUG1-7:1	chr12	 54368682	 54371102	-	lnc-SMUG1-7	lnc-SMUG1-7:1	ENSG00000228630	HOTAIR	HOXC11	NA	chr12:54366910-54370203	inter
CUST_397_PI429201921	1.1146296	A	0.9053722	A	1.15609295373321	0	lncRNA	248-3_{6001..9000}	TC01005733.hg.1	 TCONS_l2_00001463-XLOC_l2_001066 // Broad TUCP // linc-IGSF3-1 chr1:-:117315571-117325219 // chr1 // 100 // 100 // 0 // --- // 0///TCONS_l2_00001462-XLOC_l2_001066 // Broad TUCP // linc-IGSF3-1 chr1:-:117315569-117319121 // chr1 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:117315569-117319121	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00001462-XLOC_l2_001066	linc-IGSF3-1	chr1	117315569	117319121	-	NA	NA	NA	NA	NFIA	NA	chr1:61704668-61729182	Unknown
CUST_50451_PI429285431	2.8210168	A	2.8716495	A	0.965512806346038	0	lncRNA	54157-1_{1..310}	hg19_lincRNAsTranscripts_TCONS_l2_00030513 range=chrX:65041569-65041930 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030513 range=chrX:65041569-65041930 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 65041569	 65041878	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18324_PI429285431	2.8089864	A	2.7600822	P	1.03447888621952	0	lncRNA	20053-1_{1..1580}	lnc-UBLCP1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-UBLCP1-2:2	chr5	158789216	158790795	+	lnc-UBLCP1-2	lnc-UBLCP1-2:2	ENSG00000249738	AC008697.1	NA	NA	NA	inter
CUST_28981_PI429285431	6.2831225	P	6.169575	P	1.08188525896759	0	lncRNA	30702-1_{1..653}	n326462|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000034368|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000034368|-1.4255200|-0.3848705	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326462|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000034368|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000034368|-1.4255200|-0.3848705	chr1	119344489	119345141	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5770_PI429285431	4.0634065	P	4.2201233	P	0.897064235444583	0	lncRNA	5694-1_{1..1519}	"transcript_id ""ENST00000587907.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587907.1"" | genecode_v17"	chr17	 20410726	 20412244	-	ENSG00000266925.1	ENST00000587907.1	RP11-434D2.7	RP11-434D2.7-001	CDRT15L2	NA	chr17:20416807-20422244	inter
CUST_20485_PI429285431	1.2056146	A	0.91309494	A	1.22477747886148	0	lncRNA	22128-1_{1..1155}	lnc-PRPF18-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRPF18-1:5	chr10	 13697378	 13698532	+	lnc-PRPF18-1	lnc-PRPF18-1:5	ENSG00000239665.1	RP11-295P9.3	FRMD4A	NA	chr10:13687378-13707929	inner
CUST_30885_PI429285431	4.2171183	P	3.9901075	P	1.17040740309938	0	lncRNA	32673-1_{1..205}	n336895|AY927367|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332576|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332576|-0.8884420|-0.1866597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336895|AY927367|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332576|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332576|-0.8884420|-0.1866597	chr1	 84630580	 84630784	+	NA	NA	NA	NA	PRKACB	NA	chr1:84620580-84654903	inner
CUST_49966_PI429285431	1.7293564	A	1.184437	A	1.45893883446053	0	lncRNA	53714-2_{3001..5965}	hg19_lincRNAsTranscripts_TCONS_l2_00026263 range=chr7:149244153-149250817 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026263 range=chr7:149244153-149250817 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	149247153	149250117	+	NA	NA	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70"	NA	inter
CUST_2182_PI429285431	8.606565	P	8.880498	P	0.827061777012501	0	lncRNA	2174-1_{1..587}	"transcript_id ""ENST00000515504.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515504.1"" | genecode_v17"	chr5	 67819705	 67820291	+	ENSG00000249588.1	ENST00000515504.1	CTC-537E7.1	CTC-537E7.1-001	NA	NA	NA	inter
CUST_15273_PI429285431	0.9366229	A	0.9207256	A	1.01108010332336	0	lncRNA	16947-1_{1..308}	lnc-PPAP2B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPAP2B-1:1	chr1	 56840874	 56841181	-	lnc-PPAP2B-1	lnc-PPAP2B-1:1	XLOC_000845	linc-USP24-2	NA	NA	NA	inter
CUST_48033_PI429285431	0.91603446	A	0.91580874	A	1.00015646942166	0	lncRNA	51914-1_{1..2173}	"gi|410173757|ref|XR_172379.1| PREDICTED: Homo sapiens uncharacterized LOC100131530 (LOC100131530), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173757|ref|XR_172379.1| PREDICTED: Homo sapiens uncharacterized LOC100131530 (LOC100131530), misc_RNA"	NA	NA	NA	NA	NA	XR_172379.1	NA	NA	NA	"hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90"	NA	Unknown
CUST_45836_PI429285431	2.530989	A	3.3207567	A	0.578437223311434	0	lncRNA	50170-1_{1..553}	"gi|410170626|ref|XR_171116.1| PREDICTED: Homo sapiens uncharacterized LOC101059993 (LOC101059993), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170626|ref|XR_171116.1| PREDICTED: Homo sapiens uncharacterized LOC101059993 (LOC101059993), misc_RNA"	NA	NA	NA	NA	NA	XR_171116.1	NA	NA	NA	NA	NA	Unknown
CUST_18844_PI429285431	1.1843843	A	0.9203069	A	1.20086785182705	0	lncRNA	20538-2_{3001..3416}	lnc-ARHGAP21-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARHGAP21-1:1	chr10	 24543120	 24543535	-	lnc-ARHGAP21-1	lnc-ARHGAP21-1:1	ENSG00000228508	RP11-183E9.3	KIAA1217	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr10:24530120-24550350"	NA	inner
CUST_18431_PI429285431	6.890022	P	7.3117824	P	0.746513160814756	0	lncRNA	20154-1_{1..853}	lnc-XIAP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-XIAP-1:1	chrX	122867413	122868265	+	lnc-XIAP-1	lnc-XIAP-1:1	ENSG00000229033	RP5-931E15.2	THOC2	NA	chrX:122857413-122866904	inter
CUST_48162_PI429285431	1.6930604	A	0.922314	A	1.70615225879348	0	lncRNA	52028-1_{1..1354}	"gi|397137777|ref|XR_159277.1| PREDICTED: Homo sapiens uncharacterized LOC100996816 (LOC100996816), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397137777|ref|XR_159277.1| PREDICTED: Homo sapiens uncharacterized LOC100996816 (LOC100996816), misc_RNA"	NA	NA	NA	NA	NA	XR_159277.1	NA	NA	NA	NA	NA	Unknown
CUST_41275_PI429285431	1.6064341	A	1.3734869	A	1.17523331624266	0	lncRNA	42249-1_{1..94}	ENST00000579990 ncrna:miRNA chromosome:GRCh37:2:52929660:52929753:-1 gene:ENSG00000264975 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579990 ncrna:miRNA chromosome:GRCh37:2:52929660:52929753:-1 gene:ENSG00000264975 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 52929660	 52929753	-	ENSG00000264975	ENST00000579990	NA	NA	NA	NA	NA	inter
CUST_13689_PI429285431	0.9322468	A	0.9280249	A	1.00293068416438	0	lncRNA	15329-1_{1..701}	lnc-LPHN2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LPHN2-1:5	chr1	 81112248	 81112948	+	lnc-LPHN2-1	lnc-LPHN2-1:5	XLOC_000268	linc-LPHN2-1	NA	NA	NA	inter
CUST_48003_PI429285431	0.91726005	A	1.0308567	A	0.92428094764007	0	lncRNA	51888-1_{1..2025}	"gi|410173243|ref|XR_172163.1| PREDICTED: Homo sapiens uncharacterized LOC100996345 (LOC100996345), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|410173243|ref|XR_172163.1| PREDICTED: Homo sapiens uncharacterized LOC100996345 (LOC100996345), misc_RNA"	NA	NA	NA	NA	NA	XR_172163.1	NA	NA	NA	NA	NA	Unknown
CUST_10447_PI429285431	1.2337675	A	1.9843335	A	0.59437032761172	0	lncRNA	11973-1_{1..323}	lnc-C13orf44-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-C13orf44-2:1	chr13	 44810107	 44810429	-	lnc-C13orf44-2	lnc-C13orf44-2:1	XLOC_010586	linc-CCDC122-1	NA	NA	NA	inter
LNCA_21_P0004825	1.0267817	A	0.96451944	A	1.04410171197079	0	lncRNA	TCONS_00011658	NA	NA	NA	NA	XLOC_005140	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005140), lincRNA [TCONS_00011658]"	chr6:4466786-4467047	hs|6p25.1	Agilent_HUMAN_G3V2	TCONS_00011658	TCONS_00011658	chr6	  4466786	  4467047	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38569_PI429285431	9.671714	P	9.541169	P	1.0947071654456	0	lncRNA	39581-1_{1..1845}	n383530|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002prf.2||3.6611600|-0.1873754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383530|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002prf.2||3.6611600|-0.1873754	chr19	 50472911	 50474755	+	NA	NA	NA	NA	SIGLEC11	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_LOC100129083:range=chr19:51919279-519204175'pad=0,hg19_refFlat_LOC100129083:range=chr19:51919279-519204175'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr19:50462911-50464429"	NA	inter
CUST_30601_PI429285431	6.3565044	P	6.560959	P	0.867866715622595	0	lncRNA	32383-1_{1..292}	n335909|X65231|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322736|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322736|1.2070600|-0.0111101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335909|X65231|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322736|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322736|1.2070600|-0.0111101	chr19	 58579131	 58579422	+	NA	NA	NA	NA	ZNF135	NA	chr19:58570607-58581123	inner
CUST_3070_PI429285431	2.7862349	A	2.8440144	P	0.960741691487239	0	lncRNA	3049-1_{1..387}	"transcript_id ""ENST00000523342.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523342.1"" | genecode_v17"	chr8	 35861838	 35862224	-	ENSG00000253524.1	ENST00000523342.1	RP11-89M20.2	RP11-89M20.2-002	NA	NA	NA	inter
CUST_16575_PI429285431	1.108104	A	0.93876505	A	1.12454309541514	0	lncRNA	18276-1_{1..419}	lnc-GADL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GADL1-1:1	chr3	 30567647	 30568065	-	lnc-GADL1-1	lnc-GADL1-1:1	XLOC_003075	linc-AZI2-2	NA	NA	NA	inter
CUST_10559_PI429285431	0.9807402	A	0.9728588	A	1.00547791942051	0	lncRNA	12090-1_{1..439}	lnc-C17orf67-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C17orf67-2:1	chr17	 54587814	 54588252	-	lnc-C17orf67-2	lnc-C17orf67-2:1	XLOC_012527	linc-TMEM100-1	NA	NA	NA	inter
LNCA_21_P0002702	4.634817	P	4.5717106	P	1.0447128084912	0	lncRNA	ENST00000416209	XR_110001	XR_110001	NA	Hs.634259	XLOC_002643	NA	ENST00000416209	THC2479360	NA	"PREDICTED: Homo sapiens hypothetical LOC100506637 (LOC100506637), miscRNA [XR_110001]"	chr3:48889355-48889414	hs|3p21.31	Agilent_HUMAN_G3V2	ENST00000416209	ENST00000416209	chr3	 48889355	 48889414	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16214_PI429285431	9.337682	P	9.250929	P	1.06197735259805	0	lncRNA	17920-1_{1..342}	lnc-AL355149.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL355149.1-1:1	chr1	 16848056	 16848397	+	lnc-AL355149.1-1	lnc-AL355149.1-1:1	XLOC_000063	linc-CROCC-3	NA	NA	NA	inter
CUST_13119_PI429285431	0.9103441	A	0.9213539	A	0.992397633462231	0	lncRNA	14744-1_{1..455}	lnc-EDAR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EDAR-1:1	chr2	109686165	109686619	-	lnc-EDAR-1	lnc-EDAR-1:1	XLOC_002262	linc-EDAR	NA	NA	NA	inter
CUST_17064_PI429285431	0.9103968	A	0.9014568	A	1.0062159752816	0	lncRNA	18773-1_{1..295}	lnc-POM121L12-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POM121L12-1:2	chr7	 52842357	 52842651	+	lnc-POM121L12-1	lnc-POM121L12-1:2	XLOC_006101	linc-POM121L12-1	NA	NA	NA	inter
CUST_43470_PI429285431	6.3986034	P	7.0383406	P	0.641829853268501	0	lncRNA	48272-1_{1..3000}	"gi|379030592|ref|NR_046405.1| Homo sapiens thioredoxin domain containing 12 (endoplasmic reticulum) (TXNDC12), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379030592|ref|NR_046405.1| Homo sapiens thioredoxin domain containing 12 (endoplasmic reticulum) (TXNDC12), transcript variant 2, non-coding RNA"	Chr1	 52497769	 52500768	-	51060	NR_046405.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008231	0.92875975	A	0.9240815	A	1.00324797908791	0	lncRNA	TCONS_00022142	NA	NA	NA	NA	XLOC_010309	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010309), lincRNA [TCONS_00022142]"	chr13:24040303-24044707	hs|13q12.12	Agilent_HUMAN_G3V2	TCONS_00022142	TCONS_00022142	chr13	 24040303	 24044707	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21348_PI429285431	1.5458673	A	0.924937	A	1.53786653151631	0	lncRNA	22972-1_{1..435}	lnc-ZBTB25-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZBTB25-1:1	chr14	 64908399	 64908833	-	lnc-ZBTB25-1	lnc-ZBTB25-1:1	ENSG00000258824.1	CTD-2555O16.2	MTHFD1	NA	chr14:64898399-64918481	inner
CUST_50436_PI429285431	0.9198434	A	0.9100937	A	1.0067808637201	0	lncRNA	54140-1_{1..483}	hg19_lincRNAsTranscripts_TCONS_l2_00030477 range=chrX:45708587-45710946 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030477 range=chrX:45708587-45710946 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 45708587	 45709069	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31755_PI429285431	0.9184966	A	0.9105934	A	1.00549311291854	0	lncRNA	33495-1_{1..1713}	n338293|AK022050|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|687|NULL|0.1255760|-0.2479293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338293|AK022050|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|687|NULL|0.1255760|-0.2479293	chr19	  8166026	  8167738	-	NA	NA	NA	NA	KANK3	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_HNRNPM:range=chr19:8509883-85537385'pad=0,hg19_refFlat_HNRNPM:range=chr19:8509883-85537385'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70chr19:8387468-8408146"	NA	inner
LNCA_21_P0002508	1.3018563	A	0.92599267	A	1.29761610465313	0	lncRNA	TCONS_00004460	NA	NA	NA	NA	XLOC_002336	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002336), lincRNA [TCONS_00004460]"	chr2:138836390-138830230	hs|2q22.1	Agilent_HUMAN_G3V2	TCONS_00004460	TCONS_00004460	chr2	138830230	138836390	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45805_PI429285431	0.9131354	A	0.9088094	A	1.00300305486513	0	lncRNA	50145-1_{1..3000}	"gi|197209880|ref|NR_024091.1| Homo sapiens ZFP91-CNTF readthrough (non-protein coding) (ZFP91-CNTF), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|197209880|ref|NR_024091.1| Homo sapiens ZFP91-CNTF readthrough (non-protein coding) (ZFP91-CNTF), non-coding RNA"	Chr11	 58346587	 58349586	+	386607	NR_024091.1	NA	NA	NA	NA	NA	inter
CUST_50513_PI429285431	7.6736975	P	7.417658	P	1.19419588289061	0	lncRNA	54209-1_{1..387}	hg19_lincRNAsTranscripts_TCONS_l2_00030350 range=chrX:125606112-125607249 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030350 range=chrX:125606112-125607249 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	125606112	125606498	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45700_PI429285431	3.112346	P	3.0624518	A	1.03518900550125	0	lncRNA	50070-1_{1..3000}	"gi|141801873|ref|NR_002934.2| Homo sapiens scavenger receptor protein family member (LOC619207), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|141801873|ref|NR_002934.2| Homo sapiens scavenger receptor protein family member (LOC619207), non-coding RNA"	NA	NA	NA	NA	NA	NR_002934.2	NA	NA	NA	NA	NA	Unknown
CUST_43072_PI429285431	1.210239	A	0.8998235	A	1.2400647904652	0	lncRNA	47129-1_{1..137}	ENST00000408580 ncrna:snRNA chromosome:GRCh37:7:144148774:144148910:1 gene:ENSG00000221507 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408580 ncrna:snRNA chromosome:GRCh37:7:144148774:144148910:1 gene:ENSG00000221507 gene_biotype:snRNA transcript_biotype:snRNA	chr7	144148774	144148910	+	ENSG00000221507	ENST00000408580	NA	NA	TPK1	NA	chr7:144149034-144158910	inter
CUST_41673_PI429285431	0.9210281	A	0.9255667	A	0.996859025420686	0	lncRNA	43107-1_{1..78}	ENST00000390813 ncrna:miRNA chromosome:GRCh37:22:22007270:22007347:1 gene:ENSG00000212102 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390813 ncrna:miRNA chromosome:GRCh37:22:22007270:22007347:1 gene:ENSG00000212102 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 22007270	 22007347	+	ENSG00000212102	ENST00000390813	NA	NA	SDF2L1	NA	chr22:21997270-21998588	inter
CUST_46088_PI429285431	0.9062858	A	1.166408	A	0.8350171883181	0	lncRNA	50355-1_{1..1619}	"gi|397139449|ref|XR_110369.3| PREDICTED: Homo sapiens uncharacterized LOC100507065, transcript variant 1 (LOC100507065), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139449|ref|XR_110369.3| PREDICTED: Homo sapiens uncharacterized LOC100507065, transcript variant 1 (LOC100507065), misc_RNA"	Chr12	 65938018	 65939636	-	100507065	XR_110369.4	NA	NA	NA	NA	NA	inter
LNCA_21_P0010325	5.5969443	P	6.100322	P	0.705453208683992	0	lncRNA	TCONS_00029309	NA	NA	NA	NA	XLOC_014107	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014107), lincRNA [TCONS_00029309]"	chr21:45230118-45229183	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029309	TCONS_00029309	chr21	 45229183	 45230118	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13612_PI429285431	2.7206504	A	3.1829863	P	0.725810131256355	0	lncRNA	15251-1_{1..901}	lnc-UBXN4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBXN4-4:1	chr2	136868410	136869310	+	lnc-UBXN4-4	lnc-UBXN4-4:1	XLOC_001684	linc-THSD7B-2	CXCR4	NA	chr2:136871919-136875725	inter
CUST_34406_PI429285431	1.2184093	A	1.3708692	A	0.899715074352917	0	lncRNA	35888-1_{1..1064}	n341276|AF320003|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3745|NULL|7.8260800|-0.1359899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341276|AF320003|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3745|NULL|7.8260800|-0.1359899	chr7	 94989285	 94990348	-	NA	NA	NA	NA	PON2	NA	chr7:95034174-95035662	inner
CUST_10657_PI429285431	0.89459044	A	0.8908125	A	1.00262210016642	0	lncRNA	12189-1_{1..920}	lnc-AC131097.4.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC131097.4.1-3:2	chr2	243026247	243027166	-	lnc-AC131097.4.1-3	lnc-AC131097.4.1-3:2	XLOC_002560	linc-PDCD1-4	NA	NA	NA	inter
CUST_46416_PI429285431	0.91281164	A	0.9100726	A	1.00190036125551	0	lncRNA	50629-1_{1..2476}	"gi|211971075|ref|NR_024387.1| Homo sapiens coxsackie virus and adenovirus receptor pseudogene 2 (CXADRP2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|211971075|ref|NR_024387.1| Homo sapiens coxsackie virus and adenovirus receptor pseudogene 2 (CXADRP2), non-coding RNA"	Chr15	 22014403	 22016878	-	646243	NR_024387.1	NA	NA	NA	NA	NA	inter
CUST_24541_PI429285431	1.9931878	A	2.7130446	A	0.607157704876742	0	lncRNA	26091-1_{1..420}	lnc-RARRES2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RARRES2-3:1	chr7	150080889	150081308	-	lnc-RARRES2-3	lnc-RARRES2-3:1	ENSG00000239377.1	RP4-584D14.6	ZNF775	NA	chr7:150076406-150090973	inner
CUST_10912_PI429285431	1.5049181	A	1.5886658	A	0.943603254779471	0	lncRNA	12456-1_{1..321}	lnc-WNT4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WNT4-1:1	chr1	 22745334	 22745654	-	lnc-WNT4-1	lnc-WNT4-1:1	XLOC_000733	linc-WNT4	NA	NA	NA	inter
CUST_7654_PI429285431	0.95017064	A	0.9213281	A	1.0201933062597	0	lncRNA	9286-1_{1..313}	lnc-EMP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EMP1-1:1	chr12	 13683591	 13683903	+	lnc-EMP1-1	lnc-EMP1-1:1	ENSG00000256306	RP11-4N23.1	NA	NA	NA	inter
CUST_37815_PI429285431	5.236177	P	3.452335	P	3.44341961884178	0	lncRNA	38906-1_{1..225}	n346330|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1880|NULL|-1.4682800|-0.1103701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346330|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1880|NULL|-1.4682800|-0.1103701	chr4	119428059	119428283	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37309_PI429285431	0.9178287	A	0.99709916	A	0.946536168805324	0	lncRNA	38416-1_{1..411}	n345752|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1301|NULL|-1.4249000|-0.1109244	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345752|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1301|NULL|-1.4249000|-0.1109244	chr9	 98577662	 98578072	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51171_PI429285431	3.626559	P	3.1564598	P	1.38520471178986	0	lncRNA	54792-1_{1..1635}	hg19_lincRNAsTranscripts_TCONS_l2_00008314 range=chr14:62037258-62125394 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008314 range=chr14:62037258-62125394 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 62037258	 62038892	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47595_PI429285431	0.9808403	A	0.8969054	A	1.05990495529264	0	lncRNA	51598-1_{1..459}	"gi|341916020|ref|XR_109760.2| PREDICTED: Homo sapiens XAGE-4 protein (XAGE-4), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341916020|ref|XR_109760.2| PREDICTED: Homo sapiens XAGE-4 protein (XAGE-4), misc_RNA"	ChrX	 55653184	 55653642	-	139629	XR_109760.3	NA	NA	NA	NA	NA	inter
CUST_21241_PI429285431	7.68665	P	7.49428	P	1.14263925562979	0	lncRNA	22867-1_{1..1101}	lnc-KIF16B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIF16B-1:1	chr20	 16711154	 16712254	-	lnc-KIF16B-1	lnc-KIF16B-1:1	ENSG00000228809.1	RP4-705D16.3	SNRPB2	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50chr20:16710609-16721593"	NA	inner
CUST_18540_PI429285431	5.5017548	P	5.826314	P	0.798542335134669	0	lncRNA	20252-1_{1..846}	lnc-HSCB-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HSCB-1:3	chr22	 28381680	 28382525	+	lnc-HSCB-1	lnc-HSCB-1:3	ENSG00000235954	TTC28-AS1	TTC28	NA	chr22:28374002-28392380	inner
CUST_5615_PI429285431	3.3330386	P	3.7980835	P	0.724448530415997	0	lncRNA	5543-1_{1..532}	"transcript_id ""ENST00000567227.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567227.1"" | genecode_v17"	chr16	 73577840	 73578371	+	ENSG00000260848.1	ENST00000567227.1	CTD-2009A10.1	CTD-2009A10.1-001	NA	NA	NA	inter
CUST_20092_PI429285431	0.9142566	A	0.9037889	A	1.00728204279677	0	lncRNA	21740-1_{1..314}	lnc-TFPI2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TFPI2-1:1	chr7	 93597667	 93597980	-	lnc-TFPI2-1	lnc-TFPI2-1:1	ENSG00000241247.1	AC006378.3	NA	NA	NA	inter
CUST_44620_PI429285431	2.5727813	A	0.929165	A	3.12448042157056	0	lncRNA	49188-1_{1..3000}	"gi|197099983|ref|NR_024084.1| Homo sapiens SAP30-like (SAP30L), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|197099983|ref|NR_024084.1| Homo sapiens SAP30-like (SAP30L), transcript variant 4, non-coding RNA"	Chr5	153825517	153828516	+	79685	NR_024084.1	NA	NA	NA	NA	NA	inter
CUST_33413_PI429285431	0.91164297	A	0.9116381	A	1.00000337563247	0	lncRNA	34993-1_{1..1767}	n340141|AL049314|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2601|NULL|-0.8162630|-0.4056915	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340141|AL049314|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2601|NULL|-0.8162630|-0.4056915	chr10	112670355	112672121	+	NA	NA	NA	NA	BBIP1	NA	chr10:112660355-112679124	inner
CUST_21600_PI429285431	8.326742	P	8.400713	P	0.950019479279337	0	lncRNA	23213-1_{1..457}	lnc-SCRN3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SCRN3-2:1	chr2	175452201	175452657	+	lnc-SCRN3-2	lnc-SCRN3-2:1	ENSG00000237798.1	AC010894.5	WIPF1	"hg19_refFlat_WIPF1:range=chr2:175427275-1754503015'pad=0,hg19_refFlat_WIPF1:range=chr2:175427275-1754503015'pad=0 3'pad=0 strand=- repeatMasking=none,-99.00chr2:175442201-175462454"	NA	inner
CUST_49142_PI429285431	0.9146599	A	0.903373	A	1.00785416631954	0	lncRNA	52969-1_{1..826}	hg19_lincRNAsTranscripts_TCONS_l2_00021247 range=chr4:113614024-113627873 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021247 range=chr4:113614024-113627873 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	113614024	113614849	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17403_PI429285431	6.352605	P	6.3169923	P	1.02499203578787	0	lncRNA	19126-1_{1..2158}	lnc-ARID3B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARID3B-1:1	chr15	 74804733	 74806890	+	lnc-ARID3B-1	lnc-ARID3B-1:1	XLOC_011313	linc-ARID3B-1	NA	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10"	NA	inter
CUST_5764_PI429285431	0.90800816	A	1.0861007	A	0.883870834375859	0	lncRNA	5689-1_{1..485}	"transcript_id ""ENST00000582654.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582654.1"" | genecode_v17"	chr17	 19374432	 19374916	-	ENSG00000263726.1	ENST00000582654.1	CTB-187M2.3	CTB-187M2.3-001	NA	NA	NA	inter
CUST_35301_PI429285431	0.9061234	A	0.89990413	A	1.00432017462973	0	lncRNA	36704-1_{1..1515}	n342322|AK024584|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4814|NULL|2.2986400|-0.3868833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342322|AK024584|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4814|NULL|2.2986400|-0.3868833	chr14	 52753176	 52754690	+	NA	NA	NA	NA	PTGDR	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60chr14:52743176-52743442"	NA	inter
CUST_3623_PI429285431	4.502411	P	4.358651	P	1.10478068336437	0	lncRNA	3593-1_{1..465}	"transcript_id ""ENST00000434919.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000434919.2"" | genecode_v17"	chr10	 10826401	 10826865	-	ENSG00000225383.2	ENST00000434919.2	SFTA1P	SFTA1P-002	NA	NA	NA	inter
LNCA_21_P0005441	3.4363382	P	4.068535	P	0.645193227533776	0	lncRNA	TCONS_00013626	NA	NA	NA	NA	XLOC_006291	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006291), lincRNA [TCONS_00013626]"	chr7:150054522-150054581	hs|7q36.1	Agilent_HUMAN_G3V2	TCONS_00013626	TCONS_00013626	chr7	150054522	150054581	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27800_PI429285431	1.2033169	A	1.5692654	A	0.775958553234862	0	lncRNA	29386-1_{1..505}	n325028|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078323|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078323|-1.1202200|-0.2074666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325028|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078323|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078323|-1.1202200|-0.2074666	chr20	 23285431	 23285935	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50635_PI429285431	1.0605145	A	2.1969855	A	0.454870885042722	0	lncRNA	54317-1_{1..1492}	hg19_lincRNAsTranscripts_TCONS_l2_00003439 range=chr10:27220145-27229265 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003439 range=chr10:27220145-27229265 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 27220145	 27221636	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45319_PI429285431	7.558934	P	7.4033003	P	1.11391079317086	0	lncRNA	49761-1_{1..1895}	"gi|305410840|ref|NR_036577.1| Homo sapiens aprataxin (APTX), transcript variant 13, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|305410840|ref|NR_036577.1| Homo sapiens aprataxin (APTX), transcript variant 13, non-coding RNA"	Chr9	 32972604	 32974498	-	54840	NR_036577.1	NA	NA	NA	NA	NA	inter
CUST_18155_PI429285431	6.256153	P	6.5541887	P	0.813359071024678	0	lncRNA	19890-1_{1..563}	lnc-SART1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SART1-1:5	chr11	 65714581	 65715143	+	lnc-SART1-1	lnc-SART1-1:5	ENSG00000175513	TSGA10IP	TSGA10IP	NA	chr11:65713115-65724830	inner
CUST_42614_PI429285431	0.89762706	A	0.9861973	A	0.94045430983624	0	lncRNA	45476-1_{1..75}	ENST00000391316 ncrna:snoRNA chromosome:GRCh37:17:18847312:18847386:1 gene:ENSG00000212618 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391316 ncrna:snoRNA chromosome:GRCh37:17:18847312:18847386:1 gene:ENSG00000212618 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 18847312	 18847386	+	ENSG00000212618	ENST00000391316	NA	NA	SLC5A10	NA	chr17:18855478-18857386	inter
CUST_6156_PI429285431	0.90128064	A	0.9052333	A	0.997263974623902	0	lncRNA	6082-1_{1..1115}	"transcript_id ""ENST00000585822.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585822.1"" | genecode_v17"	chr18	 37421138	 37422252	-	ENSG00000267413.1	ENST00000585822.1	RP11-636O21.1	RP11-636O21.1-001	NA	NA	NA	inter
CUST_23929_PI429285431	1.6524659	A	0.89064294	A	1.69563183741604	0	lncRNA	25486-1_{1..664}	lnc-THBS4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THBS4-3:1	chr5	 79439373	 79440036	+	lnc-THBS4-3	lnc-THBS4-3:1	ENSG00000251675.1	CTC-458I2.2	SERINC5	"hg19_refFlat_SERINC5:range=chr5:79439486-795517415'pad=0,hg19_refFlat_SERINC5:range=chr5:79439486-795517415'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50chr5:79429373-79449706"	NA	inner
CUST_13707_PI429285431	3.8177958	P	3.7308524	P	1.06211751654505	0	lncRNA	15345-1_{1..302}	lnc-NCOR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCOR2-1:1	chr12	124750642	124750943	-	lnc-NCOR2-1	lnc-NCOR2-1:1	XLOC_010235	linc-CCDC92-2	ZNF664-FAM101A	NA	chr12:124740642-124760677	inner
CUST_25682_PI429285431	1.1167967	A	0.9034318	A	1.159389158434	0	lncRNA	27211-1_{1..357}	lnc-KRR1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KRR1-2:2	chr12	 76085885	 76086241	-	lnc-KRR1-2	lnc-KRR1-2:2	ENSG00000258077.1	RP11-114H23.1	NA	NA	NA	inter
CUST_4681_PI429285431	9.200483	P	9.4199095	P	0.85890680113624	0	lncRNA	4628-1_{1..809}	"transcript_id ""ENST00000596398.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596398.1"" | genecode_v17"	chr13	106357848	106358656	+	ENSG00000226620.2	ENST00000596398.1	LINC00343	LINC00343-004	NA	NA	NA	inter
CUST_40170_PI429285431	6.9520206	P	6.5341477	P	1.33595637677576	0	lncRNA	41005-1_{1..2004}	n407911|NR_027476|lncRNA|Homosapiens||RefGeneNoncode|NR_027476||3.1673400|-0.1290555	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407911|NR_027476|lncRNA|Homosapiens||RefGeneNoncode|NR_027476||3.1673400|-0.1290555	chr3	 52002525	 52004528	-	NA	NA	NA	NA	ACY1	NA	chr3:52017300-52018646	inner
CUST_33310_PI429285431	7.7277794	P	7.42197	P	1.23611194262188	0	lncRNA	34893-1_{1..2589}	n340027|AL080114|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2481|NULL|-0.2023270|-0.2049169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340027|AL080114|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2481|NULL|-0.2023270|-0.2049169	chr10	 50222411	 50224999	-	NA	NA	NA	NA	VSTM4	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.12;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20chr10:50222333-50234993"	NA	inner
CUST_14525_PI429285431	0.90214205	A	0.9045867	A	0.998306932603419	0	lncRNA	16193-1_{1..205}	lnc-TPCN2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPCN2-4:1	chr11	 68763838	 68764042	+	lnc-TPCN2-4	lnc-TPCN2-4:1	XLOC_009187	linc-TPCN2	MRGPRF	NA	chr11:68771862-68774006	inter
CUST_7707_PI429285431	0.89742917	A	0.89195156	A	1.00380400686543	0	lncRNA	9340-1_{1..2423}	lnc-RP11-625H11.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-RP11-625H11.1.1-1:1	chr15	 62936716	 62939138	-	lnc-RP11-625H11.1.1-1	lnc-RP11-625H11.1.1-1:1	ENSG00000248615	ENST00000508975	TLN2	NA	chr15:62939510-62947490	inter
CUST_14554_PI429285431	1.1144993	A	1.4849193	A	0.773557264592265	0	lncRNA	16223-1_{1..844}	lnc-AL035696.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL035696.1-3:1	chr6	   226079	   226922	+	lnc-AL035696.1-3	lnc-AL035696.1-3:1	XLOC_005118	linc-DUSP22-2	NA	NA	NA	inter
CUST_29543_PI429285431	2.581257	A	0.90913355	A	3.1868330676563	0	lncRNA	31302-1_{1..282}	n333019|AF155192|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071938|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071938|0.2251800|-0.0639922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333019|AF155192|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071938|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071938|0.2251800|-0.0639922	chr4	120549658	120549939	-	NA	NA	NA	NA	PDE5A	NA	chr4:120539658-120549981	inner
CUST_20801_PI429285431	3.3537383	P	3.6727626	P	0.801611827355717	0	lncRNA	22432-1_{1..690}	lnc-RPS21-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS21-1:2	chr20	 60931248	 60931937	+	lnc-RPS21-1	lnc-RPS21-1:2	ENSG00000228812.2	RP11-157P1.5	LAMA5	"hg19_refFlat_LAMA5:range=chr20:60884392-609423015'pad=0,hg19_refFlat_LAMA5:range=chr20:60884392-609423015'pad=0 3'pad=0 strand=- repeatMasking=none,-96.60chr20:60921248-60941527"	NA	inner
CUST_16471_PI429285431	1.1717298	A	0.90833807	A	1.20029725069577	0	lncRNA	18169-1_{1..2784}	lnc-OBFC2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OBFC2A-1:1	chr2	192562533	192565316	+	lnc-OBFC2A-1	lnc-OBFC2A-1:1	XLOC_001788	linc-SLC39A10-10	OBFC2A	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80chr2:192552533-192553248"	NA	inter
LNCA_21_P0009987	0.9224179	A	0.90883017	A	1.00946278846551	0	lncRNA	TCONS_00028580	NA	NA	NA	NA	XLOC_013594	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013594), lincRNA [TCONS_00028580]"	chr20:59658799-59658858	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028580	TCONS_00028580	chr20	 59658799	 59658858	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40619_PI429285431	3.1484957	P	3.3733473	P	0.855683039315915	0	lncRNA	41362-1_{1..3000}	n410098|NR_036529|lncRNA|Homosapiens||RefGeneNoncode|NR_036529||23.2247000|-0.2399239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410098|NR_036529|lncRNA|Homosapiens||RefGeneNoncode|NR_036529||23.2247000|-0.2399239	chr9	100000707	100003706	+	NA	NA	NA	NA	C9orf174	NA	chr9:100069910-100139577	inner
LNCA_21_P0011245	0.9229141	A	0.9095298	A	1.00932045725089	0	lncRNA	XR_110295	XR_110295	XR_110295	NA	Hs.666245	LRRC9	leucine rich repeat containing 9	NA	THC2483068	NA	"PREDICTED: Homo sapiens leucine rich repeat containing 9 (LRRC9), miscRNA [XR_110295]"	chr14:60498718-60498777	hs|14q23.1	Agilent_HUMAN_G3V2	XR_110295	XR_110295	chr14	 60498718	 60498777	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30475_PI429285431	4.729398	P	3.4932084	A	2.35575515385141	0	lncRNA	32255-1_{1..611}	n335620|CR600756|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000279951|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000279951|-1.2824600|-0.3871338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335620|CR600756|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000279951|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000279951|-1.2824600|-0.3871338	chr7	 79847993	 79848603	+	NA	NA	NA	NA	GNAI1	NA	chr7:79837993-79848725	inner
LNCA_21_P0004379	0.923451	A	2.8123033	A	0.270021782789678	0	lncRNA	TCONS_00010311	NA	NA	NA	NA	XLOC_004797	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004797), lincRNA [TCONS_00010311]"	chr5:40308174-40308115	hs|5p13.1	Agilent_HUMAN_G3V2	TCONS_00010311	TCONS_00010311	chr5	 40308115	 40308174	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48273_PI429285431	0.9108629	A	0.9124855	A	0.998875931623512	0	lncRNA	52134-1_{1..667}	hg19_lincRNAsTranscripts_TCONS_l2_00002430 range=chr1:13162851-13164468 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002430 range=chr1:13162851-13164468 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 13162851	 13163517	-	NA	NA	NA	NA	LOC440563	NA	chr1:13171872-13174468	inter
CUST_20736_PI429285431	6.376801	P	6.5493827	P	0.887253521222123	0	lncRNA	22370-1_{1..570}	lnc-FAM186B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM186B-1:1	chr12	 49971194	 49971763	-	lnc-FAM186B-1	lnc-FAM186B-1:1	ENSG00000257964.1	RP11-133N21.10	FAM186B	NA	chr12:49976658-49981288	inter
CUST_39503_PI429285431	0.921215	A	0.9200114	A	1.00083462004816	0	lncRNA	40449-2_{3001..3995}	n387238|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ait.1||6.0159900|-0.1058462	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387238|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ait.1||6.0159900|-0.1058462	chr22	 22977027	 22978021	-	NA	NA	NA	NA	GGTLC2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0,hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-55.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr22:22988782-22990368"	NA	inter
CUST_42782_PI429285431	1.3427849	A	1.2011311	A	1.10316898351422	0	lncRNA	45770-1_{1..70}	ENST00000516268 ncrna:snoRNA chromosome:GRCh37:16:50532072:50532141:-1 gene:ENSG00000252077 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516268 ncrna:snoRNA chromosome:GRCh37:16:50532072:50532141:-1 gene:ENSG00000252077 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 50532072	 50532141	-	ENSG00000252077	ENST00000516268	NA	NA	NA	NA	NA	inter
CUST_4511_PI429285431	0.91035944	A	0.976516	A	0.955179275541051	0	lncRNA	4460-1_{1..564}	"transcript_id ""ENST00000536216.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536216.1"" | genecode_v17"	chr12	128884523	128885086	+	ENSG00000257025.1	ENST00000536216.1	RP11-553N19.1	RP11-553N19.1-001	TMEM132C	NA	chr12:128874523-128899359	inner
CUST_50260_PI429285431	8.221064	P	7.9796715	P	1.1821331146419	0	lncRNA	53983-1_{1..736}	hg19_lincRNAsTranscripts_TCONS_l2_00028783 range=chr9:68726962-68748425 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028783 range=chr9:68726962-68748425 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 68726962	 68727697	+	NA	NA	NA	NA	LOC100652863	NA	chr9:68726465-68750959	inter
CUST_21630_PI429285431	0.92577416	A	1.04388	A	0.92139658757991	0	lncRNA	23242-1_{1..538}	lnc-PRKD1-8:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRKD1-8:3	chr14	 29234366	 29234903	-	lnc-PRKD1-8	lnc-PRKD1-8:3	ENSG00000257126.1	RP11-966I7.1	FOXG1	NA	chr14:29236287-29238871	inter
LNCA_21_P0003511	0.9291296	A	0.91764104	A	1.00799505408224	0	lncRNA	ENST00000511234	NA	NA	NA	NA	XLOC_004086	NA	ENST00000511234	NA	NA	"BROAD Institute lincRNA (XLOC_004086), lincRNA [TCONS_00007840]"	chr4:136713598-136713539	hs|4q28.3	Agilent_HUMAN_G3V2	ENST00000511234	ENST00000511234	chr4	136713539	136713598	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51215_PI429285431	0.8941975	A	0.9774461	A	0.943929750569251	0	lncRNA	54833-1_{1..860}	hg19_lincRNAsTranscripts_TCONS_l2_00008394 range=chr15:20487974-20496841 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008394 range=chr15:20487974-20496841 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 20487974	 20488833	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13659_PI429285431	5.2644467	P	5.187447	P	1.05482209772395	0	lncRNA	15297-1_{1..803}	lnc-MFSD4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MFSD4-2:1	chr1	205751861	205752663	+	lnc-MFSD4-2	lnc-MFSD4-2:1	XLOC_000535	linc-FAM72A-3	SLC41A1	NA	chr1:205758221-205762610	inter
CUST_32328_PI429285431	1.1120154	A	1.6352763	A	0.695797355082778	0	lncRNA	34010-1_{1..1852}	n338907|BC045766|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1333|NULL|-0.9336180|-0.1588442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338907|BC045766|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1333|NULL|-0.9336180|-0.1588442	chr19	 51656179	 51658030	-	NA	NA	NA	NA	CD33	"hg19_refFlat_SIGLEC7:range=chr19:51645627-516565025'pad=0,hg19_refFlat_SIGLEC7:range=chr19:51645627-516565025'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.60chr19:51688070-51695222"	NA	inter
CUST_27681_PI429285431	7.688839	P	7.706635	P	0.987740520080683	0	lncRNA	29259-1_{1..469}	n324888|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158284|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158284|-1.2249600|-0.4611430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324888|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158284|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158284|-1.2249600|-0.4611430	chr21	 19424711	 19425179	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_4904_PI429285431	2.0381835	A	2.6326501	A	0.662289274644439	0	lncRNA	4846-1_{1..581}	"transcript_id ""ENST00000553613.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553613.1"" | genecode_v17"	chr14	 77425981	 77426561	+	ENSG00000258602.1	ENST00000553613.1	RP11-7F17.7	RP11-7F17.7-001	NA	NA	NA	inter
CUST_36189_PI429285431	3.3893347	P	2.9127038	A	1.39149034652859	0	lncRNA	37452-1_{1..910}	n344741|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_290|NULL|-1.3106800|-0.2874409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344741|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_290|NULL|-1.3106800|-0.2874409	chr7	112757057	112757966	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1163_PI429285431	0.9050535	A	0.9014444	A	1.00250476919534	0	lncRNA	1152-1_{1..1405}	"transcript_id ""ENST00000412835.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412835.1"" | genecode_v17"	chr2	175412102	175413506	+	ENSG00000236449.1	ENST00000412835.1	AC018890.6	AC018890.6-001	WIPF1	NA	chr2:175424302-175540417	inner
CUST_45082_PI429285431	0.9427198	A	1.8076739	A	0.549063875332981	0	lncRNA	49566-1_{1..1083}	"gi|396941686|ref|NR_073058.1| Homo sapiens chromosome 7 open reading frame 55 (C7orf55), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|396941686|ref|NR_073058.1| Homo sapiens chromosome 7 open reading frame 55 (C7orf55), transcript variant 2, non-coding RNA"	Chr7	139025196	139026278	+	154791	NR_073058.1	NA	NA	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.12;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-26.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70"	NA	inter
CUST_1292_PI429285431	0.9269035	A	0.9160259	A	1.00756827346773	0	lncRNA	1282-1_{1..761}	"transcript_id ""ENST00000414438.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000414438.1"" | genecode_v17"	chr3	  6532421	  6533181	+	ENSG00000189229.10	ENST00000414438.1	AC069277.2	AC069277.2-006	NA	NA	NA	inter
CUST_47525_PI429285431	2.7332778	A	2.9323113	A	0.871133963801697	0	lncRNA	51536-1_{1..2197}	"gi|310124150|ref|XR_109728.1| PREDICTED: Homo sapiens uncharacterized LOC100506679 (LOC100506679), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310124150|ref|XR_109728.1| PREDICTED: Homo sapiens uncharacterized LOC100506679 (LOC100506679), misc_RNA"	Chr22	 43434319	 43436515	+	100506679	XR_109728.2	NA	NA	NA	"hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-58.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TTLL1:range=chr22:43435782-434715925'pad=0,hg19_refFlat_TTLL1:range=chr22:43435782-434715925'pad=0 3'pad=0 strand=- repeatMasking=none,-99.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40"	NA	inter
CUST_20045_PI429285431	5.047638	P	5.2168407	P	0.889334032497773	0	lncRNA	21696-1_{1..552}	lnc-NBPF11-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-NBPF11-1:5	chr1	146136069	146136620	-	lnc-NBPF11-1	lnc-NBPF11-1:5	ENSG00000227733.2	RP4-565E6.1	NA	NA	NA	inter
CUST_23365_PI429285431	7.257997	P	7.013894	P	1.18435616494836	0	lncRNA	24934-1_{1..198}	lnc-ANKRD12-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD12-1:2	chr18	  9254209	  9254406	+	lnc-ANKRD12-1	lnc-ANKRD12-1:2	ENSG00000265257.1	RP11-21J18.1	ANKRD12	NA	chr18:9244209-9264344	inner
LNCA_21_P0011825	0.9938877	A	0.93120366	A	1.04440700559683	0	lncRNA	TCONS_l2_00013841	NA	NA	NA	NA	XLOC_l2_007449	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007449), lincRNA [TCONS_l2_00013841]"	chr2:98319562-98319621	hs|2q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00013841	TCONS_l2_00013841	chr2	 98319562	 98319621	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41247_PI429285431	6.033817	P	6.291737	P	0.836292772546521	0	lncRNA	42188-1_{1..91}	ENST00000578235 ncrna:miRNA chromosome:GRCh37:19:20137836:20137926:-1 gene:ENSG00000264441 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578235 ncrna:miRNA chromosome:GRCh37:19:20137836:20137926:-1 gene:ENSG00000264441 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 20137836	 20137926	-	ENSG00000264441	ENST00000578235	NA	NA	ZNF682	NA	chr19:20127836-20147926	inner
CUST_29815_PI429285431	1.0326105	A	1.1150035	A	0.944489720488842	0	lncRNA	31578-1_{1..755}	n333532|BC043514|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000097710|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000097710|-0.9423400|-0.3303338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333532|BC043514|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000097710|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000097710|-0.9423400|-0.3303338	chr9	 80071212	 80071966	+	NA	NA	NA	NA	GNA14	NA	chr9:80061212-80151768	inner
CUST_34818_PI429285431	3.6454914	P	3.059181	A	1.50140209375812	0	lncRNA	36250-1_{1..1343}	n341725|BC015241|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4198|NULL|0.2876260|-0.3223641	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341725|BC015241|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4198|NULL|0.2876260|-0.3223641	chr9	 96205613	 96206955	-	NA	NA	NA	NA	FAM120A	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.82;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-22.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70chr9:96214173-96216945"	NA	inter
CUST_32798_PI429285431	3.7124982	P	3.9442825	P	0.851581019682379	0	lncRNA	34433-1_{1..632}	n339443|BC009878|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1876|NULL|-1.1645100|-0.2702737	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n339443|BC009878|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1876|NULL|-1.1645100|-0.2702737	chr21	 23095612	 23096243	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12713_PI429285431	5.7156887	P	6.0165844	P	0.811748264400455	0	lncRNA	14331-1_{1..466}	lnc-FAF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAF1-1:1	chr1	 51443654	 51444119	-	lnc-FAF1-1	lnc-FAF1-1:1	XLOC_000833	linc-FAF1-1	CDKN2C	NA	chr1:51434367-51440309	inter
LNCA_21_P0005773	1.01599	A	0.95714587	A	1.04163088424142	0	lncRNA	TCONS_00014875	NA	NA	NA	NA	XLOC_006942	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006942), lincRNA [TCONS_00014875]"	chr8:141648355-141648414	hs|8q24.3	Agilent_HUMAN_G3V2	TCONS_00014875	TCONS_00014875	chr8	141648355	141648414	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004221	1.0175848	A	0.9588164	A	1.0415762083506	0	lncRNA	TCONS_00009861	NA	NA	NA	NA	XLOC_004276	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004276), lincRNA [TCONS_00009861]"	chr5:7276049-7277758	hs|5p15.31	Agilent_HUMAN_G3V2	TCONS_00009861	TCONS_00009861	chr5	  7276049	  7277758	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29137_PI429285431	0.9244449	A	1.5618563	A	0.642865395596575	0	lncRNA	30878-1_{1..720}	n326645|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000011553|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000011553|-0.0698933|-0.3226666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326645|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000011553|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000011553|-0.0698933|-0.3226666	chr1	 35088881	 35089600	+	NA	NA	NA	NA	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70"	NA	inter
CUST_25006_PI429285431	2.594662	A	2.7948732	A	0.870423130389991	0	lncRNA	26546-1_{1..439}	lnc-CLCNKB-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLCNKB-4:1	chr1	 16524777	 16525215	+	lnc-CLCNKB-4	lnc-CLCNKB-4:1	ENSG00000234166.1	ARHGEF19-AS1	ARHGEF19	NA	chr1:16524599-16534852	inner
CUST_28614_PI429285431	0.9135623	A	0.905013	A	1.00594351620805	0	lncRNA	30298-1_{1..491}	n325982|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047852|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047852|-0.9818240|-0.3874110	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325982|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047852|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047852|-0.9818240|-0.3874110	chr10	 46699197	 46699687	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29725_PI429285431	7.594743	P	7.5971704	P	0.998318869219996	0	lncRNA	31487-1_{1..465}	n333397|BC008311|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087028|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087028|1.7951700|-0.1750339	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333397|BC008311|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087028|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087028|1.7951700|-0.1750339	chr20	 16710704	 16711168	+	NA	NA	NA	NA	SNRPB2	NA	chr20:16710609-16722417	inner
CUST_29312_PI429285431	2.197712	A	1.4403942	A	1.69034508070584	0	lncRNA	31063-1_{1..240}	n332498|DQ925692|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468698|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468698|-0.3517600|-0.4494564	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332498|DQ925692|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468698|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468698|-0.3517600|-0.4494564	chr4	114294515	114294754	+	NA	NA	NA	NA	ANK2	NA	chr4:114284515-114304896	inner
CUST_21034_PI429285431	8.544895	P	8.650025	P	0.92972116247022	0	lncRNA	22662-1_{1..647}	lnc-U47924.19.1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-U47924.19.1-1:6	chr12	  7084391	  7085037	+	lnc-U47924.19.1-1	lnc-U47924.19.1-1:6	ENSG00000126749.7	EMG1	PHB2	NA	chr12:7074515-7079916	inner
CUST_43288_PI429285431	0.9160569	A	0.90631056	A	1.00677851895584	0	lncRNA	48106-1_{1..268}	ENST00000604451 havana:sense_intronic chromosome:GRCh37:15:25236633:25236900:1 gene:ENSG00000271347 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000604451 havana:sense_intronic chromosome:GRCh37:15:25236633:25236900:1 gene:ENSG00000271347 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr15	 25236633	 25236900	+	ENSG00000271347	ENST00000604451	NA	NA	SNRPN	NA	chr15:25226633-25246900	inter
CUST_52149_PI429285431	5.8234434	P	5.7611594	P	1.04411744567861	0	lncRNA	55673-1_{1..421}	hg19_lincRNAsTranscripts_TCONS_l2_00017630 range=chr22:21527570-21532890 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017630 range=chr22:21527570-21532890 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 21527570	 21527990	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35195_PI429285431	1.6936285	A	2.353292	A	0.633025929283767	0	lncRNA	36596-1_{1..1910}	n342179|AK130868|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4666|NULL|-0.8855990|-0.2000919	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342179|AK130868|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4666|NULL|-0.8855990|-0.2000919	chr6	168931140	168933049	-	NA	NA	NA	NA	SMOC2	NA	chr6:168921140-168951706	inner
CUST_36148_PI429285431	7.667841	P	7.287055	P	1.30205103746073	0	lncRNA	37423-1_{1..758}	n344710|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_259|NULL|-1.3774000|-0.2098610	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344710|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_259|NULL|-1.3774000|-0.2098610	chr1	 91254950	 91255707	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43958_PI429285431	4.326347	P	4.5219197	P	0.873226186531472	0	lncRNA	48664-1_{1..2474}	"gi|303227934|ref|NR_036537.1| Homo sapiens uncharacterized LOC100131320 (LOC100131320), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|303227934|ref|NR_036537.1| Homo sapiens uncharacterized LOC100131320 (LOC100131320), non-coding RNA"	Chr2	130724165	130726638	-	100131320	NR_036537.1	NA	NA	NA	"hg19_refFlat_RAB6C:range=chr2:130737689-1307384535'pad=0,hg19_refFlat_RAB6C:range=chr2:130737689-1307384535'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_RAB6A:range=chr11:73388943-734418395'pad=0,hg19_refFlat_RAB6A:range=chr11:73388943-734418395'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_WTH3DI:range=chr2:132120529-1321212935'pad=0,hg19_refFlat_WTH3DI:range=chr2:132120529-1321212935'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30;hg19_refFlat_RAB6B:range=chr3:133547632-1336143105'pad=0,hg19_refFlat_RAB6B:range=chr3:133547632-1336143105'pad=0 3'pad=0 strand=- repeatMasking=none,-60.70;hg19_refFlat_RAB6A:range=chr11:73388943-734716805'pad=0,hg19_refFlat_RAB6A:range=chr11:73388943-734716805'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80"	NA	inter
CUST_10606_PI429285431	0.8989404	A	0.90354425	A	0.996813940646244	0	lncRNA	12134-1_{1..2328}	lnc-AL355390.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AL355390.1-1:1	chr13	 74992909	 74995236	-	lnc-AL355390.1-1	lnc-AL355390.1-1:1	XLOC_010653	linc-KLF12-1	NA	NA	NA	inter
CUST_48130_PI429285431	6.359612	P	6.626272	P	0.831241737286357	0	lncRNA	51998-1_{1..1277}	"gi|341913722|ref|XR_132952.1| PREDICTED: Homo sapiens uncharacterized LOC100131262 (LOC100131262), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|341913722|ref|XR_132952.1| PREDICTED: Homo sapiens uncharacterized LOC100131262 (LOC100131262), misc_RNA"	NA	NA	NA	NA	NA	XR_132952.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40"	NA	Unknown
LNCA_21_P0013615	7.923255	P	8.191423	P	0.830373322544825	0	lncRNA	TCONS_l2_00029170	NA	NA	NA	NA	XLOC_l2_015098	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015098), lincRNA [TCONS_l2_00029170]"	chr9:2422404-2422345	hs|9p24.2	Agilent_HUMAN_G3V2	TCONS_l2_00029170	TCONS_l2_00029170	chr9	  2422345	  2422404	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45796_PI429285431	1.175142	A	1.4816314	A	0.808607001126803	0	lncRNA	50136-1_{1..1540}	"gi|336594533|ref|NR_038909.1| Homo sapiens LRP4 antisense RNA 1 (LRP4-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336594533|ref|NR_038909.1| Homo sapiens LRP4 antisense RNA 1 (LRP4-AS1), non-coding RNA"	Chr11	 46867962	 46869501	+	100507401	NR_038909.1	NA	NA	NA	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_LRP4:range=chr11:46880534-469399305'pad=0,hg19_refFlat_LRP4:range=chr11:46880534-469399305'pad=0 3'pad=0 strand=- repeatMasking=none,-95.70"	NA	inter
CUST_36106_PI429285431	0.92500484	A	0.91794413	A	1.0049061069531	0	lncRNA	37399-2_{3001..3865}	n344684|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_233|NULL|-1.4001700|-0.3625463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344684|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_233|NULL|-1.4001700|-0.3625463	chr2	181973579	181974443	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_34991_PI429285431	2.0180578	A	1.4052086	A	1.52927641947151	0	lncRNA	36404-2_{3001..3418}	n341916|AL833333|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4397|NULL|11.8217000|-0.1479888	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341916|AL833333|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4397|NULL|11.8217000|-0.1479888	chr12	 50750426	 50750843	-	NA	NA	NA	NA	LARP4	NA	chr12:50759382-50800405	inner
CUST_46824_PI429285431	7.145318	P	7.799629	P	0.635378862046998	0	lncRNA	50964-1_{1..1379}	"gi|365192545|ref|NR_045670.1| Homo sapiens PSMC3 interacting protein (PSMC3IP), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|365192545|ref|NR_045670.1| Homo sapiens PSMC3 interacting protein (PSMC3IP), transcript variant 7, non-coding RNA"	Chr17	 40724328	 40725706	-	29893	NR_045670.1	NA	NA	NA	NA	NA	inter
CUST_23575_PI429285431	3.1739452	P	2.3226445	A	1.80412675055798	0	lncRNA	25143-1_{1..1528}	lnc-BAG3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BAG3-1:1	chr10	121333003	121334530	+	lnc-BAG3-1	lnc-BAG3-1:1	ENSG00000233177.1	RP11-179H18.2	TIAL1	NA	chr10:121332977-121344113	inner
CUST_51967_PI429285431	6.287519	P	6.4149866	P	0.91543693091925	0	lncRNA	55509-1_{1..507}	hg19_lincRNAsTranscripts_TCONS_l2_00016250 range=chr20:37267470-37274817 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016250 range=chr20:37267470-37274817 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 37267470	 37267976	+	NA	NA	NA	NA	ARHGAP40	NA	chr20:37257470-37279295	inner
CUST_48465_PI429285431	6.224284	P	6.2195954	P	1.00325517648828	0	lncRNA	52317-1_{1..1061}	hg19_lincRNAsTranscripts_TCONS_l2_00001801 range=chr1:224139108-224142353 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001801 range=chr1:224139108-224142353 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	224139108	224140168	-	NA	NA	NA	NA	LOC441124	NA	chr1:224133977-224141141	inter
CUST_14913_PI429285431	7.4552565	P	7.310099	P	1.10585137327805	0	lncRNA	16575-2_{3001..3122}	lnc-LRFN2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-LRFN2-2:1	chr6	 40324178	 40324299	-	lnc-LRFN2-2	lnc-LRFN2-2:1	XLOC_005712	linc-MOCS1-3	NA	NA	NA	inter
CUST_21214_PI429285431	2.7445247	A	2.2892528	A	1.37104117626302	0	lncRNA	22839-1_{1..482}	lnc-UBAP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBAP2-1:1	chr9	 33910993	 33911474	-	lnc-UBAP2-1	lnc-UBAP2-1:1	ENSG00000230925.1	RP11-176F3.7	UBE2R2	"hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr9:33900993-33920401"	NA	inner
CUST_12938_PI429285431	0.91920626	A	0.9170355	A	1.00150578873674	0	lncRNA	14566-1_{1..396}	lnc-CDH6-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH6-2:11	chr5	 29172150	 29172545	+	lnc-CDH6-2	lnc-CDH6-2:11	XLOC_004325	linc-CDH6-3	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00"	NA	inter
CUST_35325_PI429285431	3.9261098	P	4.3935914	P	0.723225975568933	0	lncRNA	36734-1_{1..1187}	n342362|BC001569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4854|NULL|-1.2024600|-0.4321239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342362|BC001569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4854|NULL|-1.2024600|-0.4321239	chr1	229734940	229736126	-	NA	NA	NA	NA	TAF5L	NA	chr1:229728858-229746108	inner
CUST_39816_PI429285431	0.90249306	A	0.89460486	A	1.00548265865214	0	lncRNA	40726-1_{1..2426}	n406278|NR_003934|lncRNA|Homosapiens||RefGeneNoncode|NR_003934||2.2114100|-0.2934756	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406278|NR_003934|lncRNA|Homosapiens||RefGeneNoncode|NR_003934||2.2114100|-0.2934756	chr7	 66274979	 66277404	-	NA	NA	NA	NA	RABGEF1	NA	chr7:66264979-66276451	inter
CUST_44614_PI429285431	1.0441319	A	0.94236296	A	1.07308840830616	0	lncRNA	49185-2_{3001..6000}	"gi|400974228|ref|NR_073101.1| Homo sapiens janus kinase and microtubule interacting protein 2 (JAKMIP2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|400974228|ref|NR_073101.1| Homo sapiens janus kinase and microtubule interacting protein 2 (JAKMIP2), transcript variant 4, non-coding RNA"	Chr5	146968002	146971001	-	9832	NR_073101.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_28230_PI429285431	0.9058464	A	1.5917711	A	0.621607277764789	0	lncRNA	29864-1_{1..362}	n325520|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000109475|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000109475|-0.8744670|-0.2697532	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325520|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000109475|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000109475|-0.8744670|-0.2697532	chr19	 40780648	 40781009	+	NA	NA	NA	NA	AKT2	NA	chr19:40770648-40791265	inner
CUST_23415_PI429285431	0.91656727	A	0.917025	A	0.999682776067197	0	lncRNA	24983-1_{1..459}	lnc-TOB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TOB1-1:1	chr17	 48918831	 48919289	-	lnc-TOB1-1	lnc-TOB1-1:1	ENSG00000261976.1	RP11-506D12.5	TOB1	"hg19_refFlat_WFIKKN2:range=chr17:48913299-489183805'pad=0,hg19_refFlat_WFIKKN2:range=chr17:48913299-489183805'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.80chr17:48925295-48928987"	NA	inner
CUST_36531_PI429285431	3.6132329	P	3.7034626	P	0.939373174154677	0	lncRNA	37731-1_{1..2258}	n345033|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_582|NULL|-1.3162000|-0.2581534	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345033|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_582|NULL|-1.3162000|-0.2581534	chr9	  2213893	  2216150	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16832_PI429285431	1.6877007	A	1.4683708	A	1.16419271904844	0	lncRNA	18539-1_{1..602}	lnc-PHF21A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PHF21A-1:1	chr11	 46241132	 46241733	-	lnc-PHF21A-1	lnc-PHF21A-1:1	XLOC_009436	linc-PHF21A-1	NA	NA	NA	inter
CUST_11168_PI429285431	0.95663	A	0.9180788	A	1.02708188046998	0	lncRNA	12725-1_{1..441}	lnc-DCT-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCT-9:1	chr13	 91510151	 91510591	-	lnc-DCT-9	lnc-DCT-9:1	XLOC_010688	linc-SLITRK6-10	NA	NA	NA	inter
CUST_13416_PI429285431	0.9113811	A	0.9062328	A	1.00357490441215	0	lncRNA	15054-1_{1..596}	lnc-GNAI3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNAI3-1:1	chr1	110139982	110140577	+	lnc-GNAI3-1	lnc-GNAI3-1:1	XLOC_000337	linc-AMPD2	GNAI3	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-32.60;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0,hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80chr1:110129982-110138452"	NA	inter
CUST_38692_PI429285431	4.0841384	P	4.541504	P	0.728314967908237	0	lncRNA	39688-2_{3001..5868}	n384088|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zrw.1||1.8546700|-0.1439766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384088|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zrw.1||1.8546700|-0.1439766	chr22	 20294560	 20297427	+	NA	NA	NA	NA	DGCR6L	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10chr22:20301761-20307628"	NA	inter
CUST_13639_PI429285431	5.4868703	P	5.843027	P	0.781243019944456	0	lncRNA	15277-3_{6001..6064}	lnc-ARFGEF2-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ARFGEF2-2:8	chr20	 47138445	 47138508	+	lnc-ARFGEF2-2	lnc-ARFGEF2-2:8	XLOC_013553	linc-ARFGEF2-2	NA	NA	NA	inter
CUST_2091_PI429285431	0.91943526	A	2.067341	A	0.451279847612174	0	lncRNA	2082-1_{1..558}	"transcript_id ""ENST00000511443.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511443.1"" | genecode_v17"	chr5	 15192248	 15192805	-	ENSG00000248486.1	ENST00000511443.1	RP1-137K24.1	RP1-137K24.1-001	NA	NA	NA	inter
CUST_39836_PI429285431	0.8840983	A	0.91646665	A	0.977813785410725	0	lncRNA	40740-3_{6001..9000}	n406441|NR_022012|lncRNA|Homosapiens||RefGeneNoncode|NR_022012||17.5057000|-0.3286454	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406441|NR_022012|lncRNA|Homosapiens||RefGeneNoncode|NR_022012||17.5057000|-0.3286454	chr3	130070358	130073357	+	NA	NA	NA	NA	COL6A5	NA	chr3:130064359-130203688	inner
CUST_10743_PI429285431	0.9323504	A	1.0919837	A	0.895252594693509	0	lncRNA	12279-1_{1..396}	lnc-RP11-67H2.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-67H2.1.1-3:1	chr8	112712240	112712635	+	lnc-RP11-67H2.1.1-3	lnc-RP11-67H2.1.1-3:1	XLOC_006902	linc-UTP23-4	NA	NA	NA	inter
CUST_25849_PI429285431	1.3262874	A	0.906409	A	1.33781479004384	0	lncRNA	27370-1_{1..362}	lnc-ARHGAP26-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ARHGAP26-4:6	chr5	141909560	141909921	+	lnc-ARHGAP26-4	lnc-ARHGAP26-4:6	ENSG00000231185.2	AC005592.2	NA	NA	NA	inter
LNCA_21_P0004450	0.93188024	A	0.9150259	A	1.01175104562126	0	lncRNA	TCONS_00010510	NA	NA	NA	NA	XLOC_005028	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005028), lincRNA [TCONS_00010510]"	chr5:140457448-140457389	hs|5q31.3	Agilent_HUMAN_G3V2	TCONS_00010510	TCONS_00010510	chr5	140457389	140457448	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_647_PI429285431	4.4642425	P	4.793743	P	0.795811967665591	0	lncRNA	639-1_{1..389}	"transcript_id ""ENST00000456255.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456255.1"" | genecode_v17"	chr2	   729306	   729694	-	ENSG00000227713.1	ENST00000456255.1	AC116609.1	AC116609.1-001	NA	NA	NA	inter
CUST_5753_PI429285431	0.9240724	A	1.1701488	A	0.843186456910894	0	lncRNA	5678-1_{1..985}	"transcript_id ""ENST00000584957.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584957.1"" | genecode_v17"	chr17	 18713269	 18714253	-	ENSG00000265478.1	ENST00000584957.1	CTD-2145A24.3	CTD-2145A24.3-001	FAM18B1	NA	chr17:18703269-18710026	inter
CUST_2733_PI429285431	0.92484397	A	1.1337438	A	0.865196761319584	0	lncRNA	2718-1_{1..605}	"transcript_id ""ENST00000478759.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000478759.1"" | genecode_v17"	chr7	    77038	    77642	+	ENSG00000242611.1	ENST00000478759.1	AC093627.8	AC093627.8-001	NA	NA	NA	inter
CUST_5257_PI429285431	6.6626806	P	7.002	P	0.790414106496789	0	lncRNA	5197-1_{1..576}	"transcript_id ""ENST00000560452.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560452.1"" | genecode_v17"	chr15	 79529085	 79529660	-	ENSG00000259234.1	ENST00000560452.1	RP11-17L5.4	RP11-17L5.4-005	ANKRD34C	"hg19_refFlat_LOC440563:range=chr1:13182991-131838725'pad=0,hg19_refFlat_LOC440563:range=chr1:13182991-131838725'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_LOC649330:range=chr1:12907261-129081425'pad=0,hg19_refFlat_LOC649330:range=chr1:12907261-129081425'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_HNRNPC:range=chr14:21679382-217023525'pad=0,hg19_refFlat_HNRNPC:range=chr14:21679382-217023525'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_HNRNPCL1:range=chr1:12907261-129081425'pad=0,hg19_refFlat_HNRNPCL1:range=chr1:12907261-129081425'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50chr15:79575146-79586156"	NA	inter
CUST_10064_PI429285431	1.3226107	A	0.9093876	A	1.33165752634726	0	lncRNA	11588-2_{3001..4143}	lnc-KHDRBS3-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KHDRBS3-5:5	chr8	135780007	135781149	+	lnc-KHDRBS3-5	lnc-KHDRBS3-5:5	XLOC_006934	linc-KHDRBS3-4	NA	"hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0,hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0 3'pad=0 strand=- repeatMasking=none,-60.30;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20"	NA	inter
CUST_6257_PI429285431	1.273328	A	2.0008783	A	0.603928515930058	0	lncRNA	6182-1_{1..423}	"transcript_id ""ENST00000581192.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581192.1"" | genecode_v17"	chr18	 72260932	 72261354	-	ENSG00000264247.1	ENST00000581192.1	RP11-231E4.4	RP11-231E4.4-002	CNDP1	NA	chr18:72250932-72252261	inter
LNCA_21_P0011847	0.9268333	A	1.4194709	A	0.710724530711058	0	lncRNA	TCONS_l2_00013965	NA	NA	NA	NA	XLOC_l2_007542	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007542), lincRNA [TCONS_l2_00013965]"	chr2:127782565-127782624	hs|2q14.3	Agilent_HUMAN_G3V2	TCONS_l2_00013965	TCONS_l2_00013965	chr2	127782565	127782624	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38529_PI429285431	0.91521	A	0.8985514	A	1.01161378396169	0	lncRNA	39541-1_{1..1772}	n383191|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ilq.2||1.1020500|-0.2939739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383191|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ilq.2||1.1020500|-0.2939739	chr17	 45532475	 45534246	-	NA	NA	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70"	NA	inter
CUST_35781_PI429285431	3.888705	P	4.3096423	P	0.746939190073134	0	lncRNA	37195-1_{1..2276}	n344465|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_13|NULL|-1.2714200|-0.2596000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344465|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_13|NULL|-1.2714200|-0.2596000	chr10	 33271389	 33273664	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20088_PI429285431	0.9726548	A	1.7098942	A	0.599886138160103	0	lncRNA	21736-1_{1..460}	lnc-C9orf9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C9orf9-1:2	chr9	135826596	135827055	+	lnc-C9orf9-1	lnc-C9orf9-1:2	ENSG00000233800.2	RP11-295G24.4	TSC1	NA	chr9:135816596-135820020	inter
CUST_24051_PI429285431	0.9127887	A	0.9221892	A	0.99350525256832	0	lncRNA	25603-1_{1..708}	lnc-NAA30-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NAA30-2:1	chr14	 58047705	 58048412	+	lnc-NAA30-2	lnc-NAA30-2:1	ENSG00000259039.1	RP11-409I10.2	SLC35F4	"hg19_refFlat_SLC35F4:range=chr14:58030853-583325435'pad=0,hg19_refFlat_SLC35F4:range=chr14:58030853-583325435'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40chr14:58037705-58058038"	NA	inner
CUST_34731_PI429285431	2.1925697	A	1.4380225	A	1.68710200031064	0	lncRNA	36176-1_{1..2744}	n341637|AK124079|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4108|NULL|0.5429050|-0.1972743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341637|AK124079|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4108|NULL|0.5429050|-0.1972743	chr8	144816309	144819052	+	NA	NA	NA	NA	FAM83H	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50chr8:144806309-144815914"	NA	inter
CUST_22440_PI429285431	0.9227183	A	0.91412616	A	1.00597338756606	0	lncRNA	24028-2_{3001..6000}	lnc-SNURF-3:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SNURF-3:18	chr15	 25621669	 25624668	+	lnc-SNURF-3	lnc-SNURF-3:18	ENSG00000224078.4	SNHG14	SNRPN	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30chr15:25608669-25630623"	NA	inner
CUST_37175_PI429285431	7.849845	P	7.9184136	P	0.953583646764288	0	lncRNA	38290-1_{1..1216}	n345609|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1158|NULL|-1.3460000|-0.3733471	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345609|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1158|NULL|-1.3460000|-0.3733471	chr3	182655945	182657160	+	NA	NA	NA	NA	DCUN1D1	NA	chr3:182660559-182667951	inter
CUST_9339_PI429285431	6.5051565	P	6.5750966	P	0.952677551933773	0	lncRNA	10845-1_{1..594}	lnc-DNAJB11-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAJB11-3:2	chr3	186174813	186175406	+	lnc-DNAJB11-3	lnc-DNAJB11-3:2	XLOC_002958	linc-DNAJB11-3	NA	NA	NA	inter
CUST_47600_PI429285431	3.5203538	P	4.7843943	P	0.416376196571746	0	lncRNA	51603-1_{1..1257}	"gi|282847477|ref|NR_033187.1| Homo sapiens protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) (PIN4), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|282847477|ref|NR_033187.1| Homo sapiens protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) (PIN4), transcript variant 3, non-coding RNA"	ChrX	 71401526	 71402782	+	5303	NR_033187.1	NA	NA	NA	NA	NA	inter
CUST_10411_PI429285431	0.927324	A	0.9147532	A	1.00875148687374	0	lncRNA	11938-1_{1..274}	lnc-TIMM21-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TIMM21-3:1	chr18	 71108983	 71109256	+	lnc-TIMM21-3	lnc-TIMM21-3:1	XLOC_012715	linc-C18orf55-3	NA	NA	NA	inter
CUST_34338_PI429285431	2.0278366	A	0.95274794	A	2.10685154328998	0	lncRNA	35831-1_{1..2609}	n341204|BC042871|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3672|NULL|-1.0491800|-0.3445525	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n341204|BC042871|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3672|NULL|-1.0491800|-0.3445525	chr7	 22689578	 22692186	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4225_PI429285431	1.4484288	A	0.9079469	A	1.45445826543112	0	lncRNA	4184-1_{1..743}	"transcript_id ""ENST00000545923.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000545923.2"" | genecode_v17"	chr12	 34343972	 34344714	-	ENSG00000255652.2	ENST00000545923.2	RP11-313F23.4	RP11-313F23.4-001	NA	NA	NA	inter
CUST_48595_PI429285431	3.2712245	P	3.0790865	P	1.14245552241787	0	lncRNA	52442-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00013564 range=chr2:34902480-34950808 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013564 range=chr2:34902480-34950808 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 34902480	 34905479	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
CUST_24228_PI429285431	0.911436	A	0.89898336	A	1.00866887121949	0	lncRNA	25779-1_{1..441}	lnc-ANK2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANK2-2:1	chr4	114865284	114865724	+	lnc-ANK2-2	lnc-ANK2-2:1	ENSG00000249304.1	RP11-26P13.2	ARSJ	NA	chr4:114855284-114875476	inner
CUST_40728_PI429285431	0.92461073	A	0.90735316	A	1.01203386727171	0	lncRNA	41462-1_{1..1880}	n410318|NR_037181_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037181_7||0.1349300|-0.2463405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410318|NR_037181_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037181_7||0.1349300|-0.2463405	chr6	   800666	   802545	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80"	NA	inter
CUST_33847_PI429285431	0.92628586	A	0.9262398	A	1.00003192686879	0	lncRNA	35392-1_{1..794}	n340633|AY545524|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3095|NULL|-1.0216500|-0.3520629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340633|AY545524|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3095|NULL|-1.0216500|-0.3520629	chr17	 35911455	 35912248	+	NA	NA	NA	NA	SYNRG	NA	chr17:35901455-35922255	inner
CUST_46759_PI429285431	13.109532	P	12.783281	P	1.25375112901599	0	lncRNA	50909-1_{1..1259}	"gi|237649079|ref|NR_027667.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|237649079|ref|NR_027667.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 1, non-coding RNA"	Chr17	 16342301	 16343559	+	125144	NR_027667.1	NA	NA	NA	NA	NA	inter
CUST_10338_PI429285431	5.553402	P	5.519589	P	1.02371419950611	0	lncRNA	11867-1_{1..365}	lnc-AC068473.1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC068473.1-5:3	chr18	 76556229	 76556593	-	lnc-AC068473.1-5	lnc-AC068473.1-5:3	XLOC_012899	linc-MBP-8	NA	NA	NA	inter
CUST_28970_PI429285431	1.1573534	A	0.9237891	A	1.17573611939076	0	lncRNA	30692-1_{1..872}	n326402|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000100476|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000100476|-0.3397410|-0.3365849	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326402|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000100476|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000100476|-0.3397410|-0.3365849	chr1	144087683	144088554	-	NA	NA	NA	NA	NA	"hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.62;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-23.60;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30"	NA	inter
CUST_14353_PI429285431	3.1448836	P	2.1535378	A	1.98803864311075	0	lncRNA	16011-1_{1..799}	lnc-CMPK2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMPK2-1:2	chr2	  6973445	  6974243	-	lnc-CMPK2-1	lnc-CMPK2-1:2	XLOC_001966	linc-RNASEH1-12	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40"	NA	inter
CUST_34721_PI429285431	3.4706047	P	3.702293	P	0.851637687582109	0	lncRNA	36167-2_{3001..3395}	n341627|BC039302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4098|NULL|-0.4661510|-0.1361449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341627|BC039302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4098|NULL|-0.4661510|-0.1361449	chr8	143488012	143488406	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12498_PI429285431	0.9128881	A	1.5736796	A	0.632531178728503	0	lncRNA	14110-1_{1..967}	lnc-TLE4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TLE4-2:1	chr9	 82649216	 82650182	+	lnc-TLE4-2	lnc-TLE4-2:1	XLOC_007419	linc-FAM75D4-2	NA	NA	NA	inter
CUST_1372_PI429285431	0.9037934	A	0.90262055	A	1.00081328821037	0	lncRNA	1360-1_{1..2044}	"transcript_id ""ENST00000483525.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000483525.1"" | genecode_v17"	chr3	 70048895	 70050938	+	ENSG00000240405.1	ENST00000483525.1	RP11-460N16.1	RP11-460N16.1-001	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.52;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_49582_PI429285431	1.0433404	A	1.4679223	A	0.74505462070929	0	lncRNA	53371-1_{1..596}	hg19_lincRNAsTranscripts_TCONS_l2_00024949 range=chr6:141167170-141219542 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024949 range=chr6:141167170-141219542 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	141167170	141167765	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40"	NA	inter
CUST_39146_PI429285431	6.4709587	P	5.55516	P	1.88661324328392	0	lncRNA	40121-2_{3001..4098}	n385776|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dwz.2||-0.0503229|-0.4181090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385776|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dwz.2||-0.0503229|-0.4181090	chrX	 67756021	 67757118	+	NA	NA	NA	NA	YIPF6	NA	chrX:67743021-67757127	inner
LNCA_21_P0013094	0.9217828	A	0.9079109	A	1.00966164358449	0	lncRNA	ENST00000422736	NA	NA	NA	NA	XLOC_l2_013124	NA	ENST00000422736	THC2751607	NA	"BROAD Institute lincRNA (XLOC_l2_013124), lincRNA [TCONS_l2_00024921]"	chr6:134768658-134768599	hs|6q23.2	Agilent_HUMAN_G3V2	ENST00000422736	ENST00000422736	chr6	134768599	134768658	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29924_PI429285431	6.2913976	P	4.806725	P	2.79853656934475	0	lncRNA	31688-1_{1..433}	n334072|M33328|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195508|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195508|1.3306000|-0.2707693	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334072|M33328|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195508|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195508|1.3306000|-0.2707693	chr5	 96071867	 96072299	+	NA	NA	NA	NA	CAST	NA	chr5:96061867-96087284	inner
LNCA_21_P0001462	4.4675264	P	4.91032	P	0.735708619978081	0	lncRNA	TCONS_00001382	NA	NA	NA	NA	XLOC_000686	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000686), lincRNA [TCONS_00001382]"	chr1:5058227-5058168	hs|1p36.32	Agilent_HUMAN_G3V2	TCONS_00001382	TCONS_00001382	chr1	  5058168	  5058227	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29980_PI429285431	4.1713915	P	5.163987	P	0.502572800833761	0	lncRNA	31746-1_{1..222}	n334242|S65442|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216096|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216096|1.3507200|0.0052086	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334242|S65442|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216096|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216096|1.3507200|0.0052086	chr15	 91422950	 91423171	+	NA	NA	NA	NA	FURIN	NA	chr15:91412950-91426687	inner
CUST_9609_PI429285431	0.9239375	A	0.91953886	A	1.00305355755217	0	lncRNA	11126-1_{1..3000}	lnc-RNASEH1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RNASEH1-4:1	chr2	  4021135	  4024134	-	lnc-RNASEH1-4	lnc-RNASEH1-4:1	XLOC_001954	linc-RNASEH1-7	NA	NA	NA	inter
CUST_16213_PI429285431	2.4140768	A	1.3125402	A	2.14583121164563	0	lncRNA	17919-1_{1..561}	lnc-FGGY-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGGY-3:1	chr1	 59598019	 59598579	+	lnc-FGGY-3	lnc-FGGY-3:1	XLOC_000220	linc-FGGY-2	NA	NA	NA	inter
CUST_18174_PI429285431	1.3648443	A	0.97148883	A	1.31344470917749	0	lncRNA	19909-1_{1..403}	lnc-PFKP-15:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PFKP-15:1	chr10	  3977871	  3978273	+	lnc-PFKP-15	lnc-PFKP-15:1	ENSG00000226005	RP11-464C19.3	NA	NA	NA	inter
CUST_5786_PI429285431	0.9024864	A	0.9085169	A	0.995828700068317	0	lncRNA	5708-2_{3001..3644}	"transcript_id ""ENST00000582527.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582527.1"" | genecode_v17"	chr17	 21937719	 21938362	+	ENSG00000266885.1	ENST00000582527.1	RP11-744K17.2	RP11-744K17.2-001	NA	NA	NA	inter
CUST_6265_PI429285431	0.8985528	A	0.93023914	A	0.978276139833267	0	lncRNA	6190-1_{1..598}	"transcript_id ""ENST00000579714.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579714.1"" | genecode_v17"	chr18	 73966247	 73966844	-	ENSG00000265717.1	ENST00000579714.1	RP11-94B19.7	RP11-94B19.7-001	NA	NA	NA	inter
LNCA_21_P0006656	2.172397	A	0.9166519	A	2.38790443423971	0	lncRNA	ENST00000434386	NA	NA	NA	NA	XLOC_008401	NA	ENST00000434386	THC2664400	NA	"BROAD Institute lincRNA (XLOC_008401), lincRNA [TCONS_00017792]"	chr10:16330985-16331044	hs|10p13	Agilent_HUMAN_G3V2	ENST00000434386	ENST00000434386	chr10	 16330985	 16331044	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36116_PI429285431	0.9207331	A	0.92045045	A	1.00019593724378	0	lncRNA	37408-1_{1..3000}	n344693|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_242|NULL|-1.5480700|-0.3232083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n344693|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_242|NULL|-1.5480700|-0.3232083	chr4	 24427775	 24430774	-	NA	NA	NA	NA	DHX15	"hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.72;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr4:24529087-24536490"	NA	inter
CUST_46742_PI429285431	11.752959	P	12.021109	P	0.830383682886149	0	lncRNA	50894-1_{1..706}	"gi|262263354|ref|NR_030697.1| Homo sapiens trafficking protein particle complex 1 (TRAPPC1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|262263354|ref|NR_030697.1| Homo sapiens trafficking protein particle complex 1 (TRAPPC1), transcript variant 4, non-coding RNA"	Chr17	  7833663	  7834368	-	58485	NR_030697.1	NA	NA	NA	NA	NA	inter
CUST_8159_PI429285431	1.2993643	A	0.96495444	A	1.26086154302728	0	lncRNA	9762-1_{1..629}	lnc-WRNIP1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WRNIP1-2:5	chr6	  2398811	  2399439	+	lnc-WRNIP1-2	lnc-WRNIP1-2:5	ENSG00000250903	RP1-80B9.2	NA	NA	NA	inter
CUST_27420_PI429285431	2.2162285	A	3.1263342	A	0.532146101764645	0	lncRNA	28985-1_{1..784}	n324590|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039869|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039869|-1.0652900|-0.3664831	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324590|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039869|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039869|-1.0652900|-0.3664831	chr6	 12115888	 12116671	+	NA	NA	NA	NA	HIVEP1	NA	chr6:12105888-12127075	inner
CUST_29511_PI429285431	2.3117034	A	2.4266822	A	0.92339587967381	0	lncRNA	31269-1_{1..364}	n332945|AF088050|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067598|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067598|-1.0325400|-0.2881628	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332945|AF088050|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067598|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067598|-1.0325400|-0.2881628	chr1	156129356	156129719	+	NA	NA	NA	NA	SEMA4A	"hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90chr1:156119735-156139720"	NA	inner
LNCA_21_P0006816	1.3188107	A	2.332086	A	0.495420234828498	0	lncRNA	TCONS_00018090	NA	NA	NA	NA	XLOC_008357	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008357), lincRNA [TCONS_00018090]"	chr10:4006341-4006400	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_00018090	TCONS_00018090	chr10	  4006341	  4006400	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39453_PI429285431	4.0412397	P	3.257461	A	1.72163426896572	0	lncRNA	40397-1_{1..1256}	n386950|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vdm.1||6.3290900|-0.2453515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386950|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vdm.1||6.3290900|-0.2453515	chr16	 29086162	 29087417	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11388_PI429285431	0.9077233	A	0.90295136	A	1.00331313308969	0	lncRNA	12952-1_{1..931}	lnc-MCTP2-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MCTP2-8:1	chr15	 95613602	 95614532	+	lnc-MCTP2-8	lnc-MCTP2-8:1	XLOC_011366	linc-NR2F2-5	NA	NA	NA	inter
CUST_7746_PI429285431	2.0692766	A	1.9457511	A	1.08939375349071	0	lncRNA	9374-1_{1..2013}	lnc-PDE6A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDE6A-1:1	chr5	149188987	149190999	-	lnc-PDE6A-1	lnc-PDE6A-1:1	ENSG00000227424	ENST00000417016	PPARGC1B	NA	chr5:149178987-149199250	inner
CUST_816_PI429285431	0.92375714	A	1.273585	A	0.784677718766423	0	lncRNA	809-1_{1..541}	"transcript_id ""ENST00000421563.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421563.1"" | genecode_v17"	chr2	 23598100	 23598640	-	ENSG00000235497.1	ENST00000421563.1	AC012506.4	AC012506.4-002	KLHL29	NA	chr2:23608298-23614170	inter
CUST_12078_PI429285431	6.421551	P	6.665436	P	0.844468198927365	0	lncRNA	13670-1_{1..1003}	lnc-TMEM140-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM140-1:1	chr7	134856452	134857454	+	lnc-TMEM140-1	lnc-TMEM140-1:1	XLOC_006263	linc-STRA8-2	TMEM140	NA	chr7:134846452-134850967	inter
CUST_41030_PI429285431	0.89680994	A	1.1854047	A	0.818699114479299	0	lncRNA	41689-1_{1..569}	n411661|NR_040246|lncRNA|Homosapiens||RefGeneNoncode|NR_040246||-1.0339300|-0.2638469	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411661|NR_040246|lncRNA|Homosapiens||RefGeneNoncode|NR_040246||-1.0339300|-0.2638469	chr12	106890187	106890755	-	NA	NA	NA	NA	RFX4	"hg19_refFlat_RIC8B:range=chr12:107168524-1072797935'pad=0,hg19_refFlat_RIC8B:range=chr12:107168524-1072797935'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10chr12:106976685-107156582"	NA	inter
CUST_914_PI429285431	4.0936513	P	3.9018407	P	1.14219628710548	0	lncRNA	904-1_{1..765}	"transcript_id ""ENST00000433432.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433432.1"" | genecode_v17"	chr2	 66924257	 66925021	-	ENSG00000237179.1	ENST00000433432.1	AC007392.4	AC007392.4-002	NA	NA	NA	inter
LNCA_21_P0003683	0.9946924	A	0.93176764	A	1.04458128402909	0	lncRNA	TCONS_00008340	NA	NA	NA	NA	XLOC_003789	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003789), lincRNA [TCONS_00008340]"	chr4:175790267-175802529	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_00008340	TCONS_00008340	chr4	175790267	175802529	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35953_PI429285431	1.0885623	A	0.9448526	A	1.10474216552236	0	lncRNA	37309-1_{1..1184}	n344584|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_132|NULL|-1.6816400|-0.3126758	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344584|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_132|NULL|-1.6816400|-0.3126758	chr7	155754952	155756135	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46020_PI429285431	0.92079973	A	0.92724437	A	0.995542878534131	0	lncRNA	50302-1_{1..1003}	"gi|310122878|ref|XR_110357.1| PREDICTED: Homo sapiens uncharacterized LOC100506684 (LOC100506684), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310122878|ref|XR_110357.1| PREDICTED: Homo sapiens uncharacterized LOC100506684 (LOC100506684), misc_RNA"	NA	NA	NA	NA	NA	XR_110357.1	NA	NA	NA	NA	NA	Unknown
CUST_31242_PI429285431	5.109576	P	4.600734	P	1.42290761976512	0	lncRNA	33031-1_{1..369}	n337692|AF147383|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|74|NULL|-1.1653000|-0.2517397	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337692|AF147383|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|74|NULL|-1.1653000|-0.2517397	chr15	 35292102	 35292470	-	NA	NA	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-19.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20"	NA	inter
CUST_33068_PI429285431	5.941944	P	5.8852696	P	1.04006550897641	0	lncRNA	34676-1_{1..970}	n339755|BC032042|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2202|NULL|-1.1609900|-0.1436850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339755|BC032042|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2202|NULL|-1.1609900|-0.1436850	chr3	196729776	196730745	+	NA	NA	NA	NA	MFI2	"hg19_refFlat_MFI2:range=chr3:196730243-1967565735'pad=0,hg19_refFlat_MFI2:range=chr3:196730243-1967565735'pad=0 3'pad=0 strand=- repeatMasking=none,-99.80chr3:196719776-196741615"	NA	inner
CUST_7482_PI429285431	1.5247848	A	0.9045072	A	1.53717093166288	0	lncRNA	9122-2_{3001..3370}	lnc-RHOV-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RHOV-1:1	chr15	 41323640	 41324009	-	lnc-RHOV-1	lnc-RHOV-1:1	ENSG00000251290	ENST00000511636	INO80	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10chr15:41310640-41332414"	NA	inner
CUST_39212_PI429285431	1.6646639	A	1.8215152	A	0.896980607573005	0	lncRNA	40187-1_{1..932}	n386020|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009yyz.1||-0.4637520|-0.3560032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386020|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009yyz.1||-0.4637520|-0.3560032	chr11	114578109	114579040	+	NA	NA	NA	NA	FAM55B	NA	chr11:114568109-114577652	inter
CUST_41827_PI429285431	8.189276	P	8.51227	P	0.79940915499477	0	lncRNA	43427-1_{1..111}	ENST00000385292 ncrna:miRNA chromosome:GRCh37:14:101521738:101521848:1 gene:ENSG00000208027 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385292 ncrna:miRNA chromosome:GRCh37:14:101521738:101521848:1 gene:ENSG00000208027 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101521738	101521848	+	ENSG00000208027	ENST00000385292	NA	NA	NA	NA	NA	inter
CUST_33839_PI429285431	0.9208627	A	0.91231084	A	1.00594530121293	0	lncRNA	35386-1_{1..2090}	n340626|BC040477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3088|NULL|-0.8109940|-0.2461139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340626|BC040477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3088|NULL|-0.8109940|-0.2461139	chr17	 34884341	 34886430	-	NA	NA	NA	NA	MYO19	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80chr17:34874341-34891305"	NA	inner
CUST_15878_PI429285431	6.409431	P	6.0509195	P	1.28210240630754	0	lncRNA	17569-1_{1..1529}	lnc-C2orf55-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2orf55-1:3	chr2	 99388452	 99389980	-	lnc-C2orf55-1	lnc-C2orf55-1:3	XLOC_002221	linc-MGAT4A	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40"	NA	inter
CUST_26937_PI429285431	0.91993886	A	1.4109232	A	0.71153945411191	0	lncRNA	28458-1_{1..425}	n324017|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053285|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053285|-1.3294400|-0.3462262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324017|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053285|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053285|-1.3294400|-0.3462262	chr9	 98489158	 98489582	+	NA	NA	NA	NA	LOC100506667	NA	chr9:98532606-98533224	inter
CUST_22786_PI429285431	1.1938937	A	0.90677655	A	1.22019958913102	0	lncRNA	24366-1_{1..2513}	lnc-FAM138A-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>lnc-FAM138A-5:1	chr1	   267096	   269608	-	lnc-FAM138A-5	lnc-FAM138A-5:1	ENSG00000228463.3	AP006222.2	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90"	NA	inter
CUST_44928_PI429285431	0.911061	A	0.9054322	A	1.00390920794815	0	lncRNA	49442-1_{1..628}	"gi|397139178|ref|XR_158816.1| PREDICTED: Homo sapiens uncharacterized LOC100996411 (LOC100996411), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139178|ref|XR_158816.1| PREDICTED: Homo sapiens uncharacterized LOC100996411 (LOC100996411), misc_RNA"	NA	NA	NA	NA	NA	XR_158816.1	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.50"	NA	Unknown
CUST_48408_PI429285431	6.1343784	P	4.757621	P	2.59684049052197	0	lncRNA	52261-1_{1..408}	hg19_lincRNAsTranscripts_TCONS_l2_00000557 range=chr1:143347988-143351592 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000557 range=chr1:143347988-143351592 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	143347988	143348395	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18215_PI429285431	7.67609	P	7.624784	P	1.0362025219556	0	lncRNA	19950-1_{1..517}	lnc-PPIAL4B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-PPIAL4B-1:3	chr1	144340851	144341367	-	lnc-PPIAL4B-1	lnc-PPIAL4B-1:3	ENSG00000235398	BX248398.1	LOC730256	NA	chr1:144339763-144340584	inter
CUST_11489_PI429285431	0.93042153	A	0.93803835	A	0.994734335165681	0	lncRNA	13057-1_{1..424}	lnc-UTP11L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UTP11L-2:1	chr1	 38627951	 38628374	+	lnc-UTP11L-2	lnc-UTP11L-2:1	XLOC_000147	linc-AKIRIN1-4	NA	NA	NA	inter
CUST_12594_PI429285431	4.2420435	P	4.126613	P	1.08329825334941	0	lncRNA	14207-1_{1..350}	lnc-FAM92A1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM92A1-2:1	chr8	 94508477	 94508826	+	lnc-FAM92A1-2	lnc-FAM92A1-2:1	XLOC_006872	linc-FAM92A1-1	NA	NA	NA	inter
CUST_10031_PI429285431	0.9066476	A	0.9872793	A	0.945643495585321	0	lncRNA	11558-1_{1..508}	lnc-ZFP64-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP64-4:1	chr20	 51233279	 51233786	-	lnc-ZFP64-4	lnc-ZFP64-4:1	XLOC_013798	linc-ZFP64-6	NA	NA	NA	inter
CUST_46047_PI429285431	7.1862655	P	5.607128	P	2.98791167175544	0	lncRNA	50323-2_{3001..4696}	"gi|345110612|ref|NR_045072.1| Homo sapiens cysteine-serine-rich nuclear protein 2 (CSRNP2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|345110612|ref|NR_045072.1| Homo sapiens cysteine-serine-rich nuclear protein 2 (CSRNP2), transcript variant 2, non-coding RNA"	Chr12	 51457988	 51459683	-	81566	NR_045072.1	NA	NA	NA	NA	NA	inter
CUST_13602_PI429285431	6.227191	P	6.4130683	P	0.879114325666513	0	lncRNA	15241-1_{1..286}	lnc-PAK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAK1-1:1	chr11	 77186081	 77186366	-	lnc-PAK1-1	lnc-PAK1-1:1	XLOC_009510	linc-PAK1-1	PAK1	NA	chr11:77176081-77185108	inter
CUST_20982_PI429285431	4.481367	P	4.487746	P	0.995588174954589	0	lncRNA	22611-1_{1..898}	lnc-STYX-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STYX-2:1	chr14	 53244271	 53245168	+	lnc-STYX-2	lnc-STYX-2:1	ENSG00000259049.1	RP11-589M4.1	STYX	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60chr14:53234271-53241707"	NA	inner
CUST_49764_PI429285431	2.6472921	A	2.6982846	A	0.965272042925676	0	lncRNA	53528-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00026562 range=chr7:51453002-51461071 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026562 range=chr7:51453002-51461071 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 51456002	 51459001	-	NA	NA	NA	NA	LOC100131871	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20chr7:51459730-51460910"	NA	inter
CUST_21317_PI429285431	4.508226	P	4.509783	P	0.99892135199929	0	lncRNA	22940-1_{1..570}	lnc-SDSL-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SDSL-4:1	chr12	114374652	114375221	+	lnc-SDSL-4	lnc-SDSL-4:1	ENSG00000257359.1	RP11-780K2.1	RBM19	"hg19_refFlat_RBM19:range=chr12:114261029-1144040325'pad=0,hg19_refFlat_RBM19:range=chr12:114261029-1144040325'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20chr12:114364652-114385060"	NA	inner
CUST_43295_PI429285431	0.920968	A	0.9280462	A	0.995105781535437	0	lncRNA	48114-1_{1..421}	ENST00000589356 havana:sense_overlapping chromosome:GRCh37:17:34145403:34150717:1 gene:ENSG00000267347 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000589356 havana:sense_overlapping chromosome:GRCh37:17:34145403:34150717:1 gene:ENSG00000267347 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	chr17	 34145403	 34145823	+	ENSG00000267347	ENST00000589356	NA	NA	TAF15	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10chr17:34136488-34160717"	NA	inner
CUST_11492_PI429285431	1.4316648	A	0.9111588	A	1.43445827089473	0	lncRNA	13060-1_{1..1240}	lnc-CCDC102B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC102B-2:1	chr18	 66832297	 66833536	+	lnc-CCDC102B-2	lnc-CCDC102B-2:1	XLOC_012707	linc-DOK6	NA	NA	NA	inter
CUST_18465_PI429285431	3.5543919	P	4.260623	P	0.612919240888884	0	lncRNA	20186-1_{1..3000}	lnc-C16orf42-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C16orf42-2:1	chr16	  1358431	  1361430	-	lnc-C16orf42-2	lnc-C16orf42-2:1	ENSG00000206088	AC120498.2	UBE2I	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90chr16:1348431-1369414"	NA	inner
LNCA_21_P0014182	0.92856884	A	0.9240442	A	1.00314116460968	0	lncRNA	XR_108738	XR_108738	XR_108738	NA	Hs.520664	LOC100505904	uncharacterized LOC100505904	NA	THC2621911	NA	"PREDICTED: Homo sapiens hypothetical LOC100505904 (LOC100505904), miscRNA [XR_108738]"	chr7:7319191-7319250	hs|7p21.3	Agilent_HUMAN_G3V2	XR_108738	XR_108738	chr7	  7319191	  7319250	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30467_PI429285431	3.9269755	P	5.266959	P	0.395025173780513	0	lncRNA	32247-1_{1..417}	n335611|CR598168|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000277363|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000277363|-0.8212700|-0.2043811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335611|CR598168|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000277363|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000277363|-0.8212700|-0.2043811	chr2	113960077	113960493	+	NA	NA	NA	NA	PSD4	NA	chr2:113950077-113960677	inner
CUST_29402_PI429285431	5.054325	P	3.7485847	P	2.47210547728186	0	lncRNA	31156-1_{1..201}	n332758|AF024705|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062745_02|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062745_02|1.2506800|-0.0067557	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332758|AF024705|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062745_02|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062745_02|1.2506800|-0.0067557	chr19	 37642871	 37643071	-	NA	NA	NA	NA	ZNF585A	NA	chr19:37640990-37653072	inner
CUST_11474_PI429285431	0.9170088	A	0.91207314	A	1.00342699758791	0	lncRNA	13040-1_{1..366}	lnc-RDX-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RDX-1:1	chr11	109694414	109694779	-	lnc-RDX-1	lnc-RDX-1:1	XLOC_009547	linc-EXPH5	NA	NA	NA	inter
CUST_30566_PI429285431	0.9026126	A	0.90054816	A	1.00143198507832	0	lncRNA	32348-1_{1..224}	n335771|X07062|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321238|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321238|-0.8194670|-0.1478670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335771|X07062|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321238|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321238|-0.8194670|-0.1478670	chr6	  2615166	  2615389	-	NA	NA	NA	NA	C6orf195	NA	chr6:2622972-2625390	inter
CUST_8434_PI429285431	13.303406	P	12.220222	P	2.1187068700644	0	lncRNA	10004-1_{1..712}	lnc-SERPINC1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:4	chr1	173837098	173837809	-	lnc-SERPINC1-1	lnc-SERPINC1-1:4	ENSG00000234741	GAS5	DARS2	NA	chr1:173827098-173827682	inter
LNCA_21_P0004323	0.94359493	A	0.9257644	A	1.01243587189972	0	lncRNA	TCONS_00010156	NA	NA	NA	NA	XLOC_004622	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004622), lincRNA [TCONS_00010156]"	chr5:160490648-160509390	hs|5q34	Agilent_HUMAN_G3V2	TCONS_00010156	TCONS_00010156	chr5	160490648	160509390	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24097_PI429285431	0.9280217	A	0.93049115	A	0.998289771804752	0	lncRNA	25648-1_{1..332}	lnc-NME1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NME1-1:1	chr17	 49162658	 49162989	+	lnc-NME1-1	lnc-NME1-1:1	ENSG00000249870.1	RP11-481C4.1	SPAG9	NA	chr17:49152658-49172832	inner
CUST_12995_PI429285431	1.534344	A	0.922814	A	1.52787868861943	0	lncRNA	14622-1_{1..804}	lnc-C15orf2-9:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-9:7	chr15	 24523358	 24524161	+	lnc-C15orf2-9	lnc-C15orf2-9:7	XLOC_011174	linc-C15orf2-8	NA	NA	NA	inter
CUST_8714_PI429285431	0.91122043	A	0.90581423	A	1.00375432216555	0	lncRNA	10257-1_{1..2276}	lnc-CNN1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CNN1-2:1	chr19	 11637919	 11640194	+	lnc-CNN1-2	lnc-CNN1-2:1	ENSG00000247118	AC008481.2	ECSIT	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50chr19:11627919-11639987"	NA	inner
CUST_11219_PI429285431	0.9072929	A	1.3951857	A	0.713065841340303	0	lncRNA	12777-1_{1..719}	lnc-IRX3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-IRX3-2:1	chr16	 54882053	 54882771	-	lnc-IRX3-2	lnc-IRX3-2:1	XLOC_011948	linc-IRX3-2	NA	NA	NA	inter
CUST_50217_PI429285431	0.9154048	A	0.9089648	A	1.00447384574202	0	lncRNA	53941-1_{1..456}	hg19_lincRNAsTranscripts_TCONS_l2_00029313 range=chr9:66523822-66536451 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029313 range=chr9:66523822-66536451 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 66523822	 66524277	-	NA	NA	NA	NA	LOC100132004	NA	chr9:66544359-66546451	inter
CUST_39479_PI429285431	7.076077	P	6.5146403	P	1.47573809152654	0	lncRNA	40425-1_{1..3000}	n387116|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010yta.1||0.2024760|-0.2286897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387116|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010yta.1||0.2024760|-0.2286897	chr2	 86247338	 86250337	-	NA	NA	NA	NA	POLR1A	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_EFCAB5:range=chr17:28270646-284007085'pad=0,hg19_refFlat_EFCAB5:range=chr17:28270646-284007085'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60chr2:86253451-86260991"	NA	inter
CUST_24980_PI429285431	1.0860305	A	0.9062549	A	1.13270768771642	0	lncRNA	26520-1_{1..384}	lnc-TNFRSF17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNFRSF17-1:1	chr16	 12002662	 12003045	+	lnc-TNFRSF17-1	lnc-TNFRSF17-1:1	ENSG00000261216.1	RP11-166B2.5	GSPT1	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60chr16:11992662-12010519"	NA	inner
CUST_18995_PI429285431	4.3111725	P	5.5665836	P	0.418874190950422	0	lncRNA	20686-1_{1..1101}	lnc-RASA1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASA1-3:5	chr5	 87732090	 87733190	+	lnc-RASA1-3	lnc-RASA1-3:5	ENSG00000247828	CTC-358I24.1	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
LNCA_21_P0001086	5.9495883	M	5.9438963	M	1.00395318706353	0	lncRNA	ENST00000458555	NA	NA	NA	NA	XLOC_000671	NA	ENST00000458555	NA	NA	"BROAD Institute lincRNA (XLOC_000671), lincRNA [TCONS_00000447]"	chr1:948497-948438	hs|1p36.33	Agilent_HUMAN_G3V2	ENST00000458555	ENST00000458555	chr1	   948438	   948497	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25457_PI429285431	1.1154666	A	1.6634643	A	0.683968742359689	0	lncRNA	26987-1_{1..964}	lnc-KLHL25-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL25-2:1	chr15	 86293473	 86294436	-	lnc-KLHL25-2	lnc-KLHL25-2:1	ENSG00000259407.1	RP11-158M2.3	AKAP13	"hg19_refFlat_AKAP13:range=chr15:86163323-862879085'pad=0,hg19_refFlat_AKAP13:range=chr15:86163323-862879085'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_AKAP13:range=chr15:86028952-862879085'pad=0,hg19_refFlat_AKAP13:range=chr15:86028952-862879085'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60chr15:86283473-86292586"	NA	inter
CUST_25754_PI429285431	0.98347676	A	0.9247377	A	1.04155502609493	0	lncRNA	27280-1_{1..569}	lnc-AC005323.1.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC005323.1.1-1:4	chr17	 10515776	 10516344	+	lnc-AC005323.1.1-1	lnc-AC005323.1.1-1:4	ENSG00000214970.2	CTC-297N7.7	NA	NA	NA	inter
CUST_17616_PI429285431	4.598687	P	4.9042478	P	0.809127633792593	0	lncRNA	19340-1_{1..289}	lnc-ALDH1A1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALDH1A1-3:1	chr9	 75799389	 75799677	-	lnc-ALDH1A1-3	lnc-ALDH1A1-3:1	XLOC_007735	linc-ALDH1A1-1	NA	NA	NA	inter
CUST_2117_PI429285431	0.9122125	A	0.90643996	A	1.00400923539283	0	lncRNA	2108-1_{1..487}	"transcript_id ""ENST00000512939.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512939.1"" | genecode_v17"	chr5	 26382628	 26383114	-	ENSG00000249099.1	ENST00000512939.1	RP11-351N6.1	RP11-351N6.1-001	NA	NA	NA	inter
CUST_5519_PI429285431	8.11815	P	9.071463	M	0.516445136297367	0	lncRNA	5450-1_{1..657}	"transcript_id ""ENST00000562218.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562218.1"" | genecode_v17"	chr16	 46737281	 46737937	-	ENSG00000261788.1	ENST00000562218.1	RP11-480G7.1	RP11-480G7.1-001	MYLK3	NA	chr16:46736194-46747937	inner
CUST_17876_PI429285431	0.9123869	A	0.9040266	A	1.00581174139342	0	lncRNA	19613-1_{1..694}	lnc-CLIC6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CLIC6-1:1	chr21	 36109407	 36110100	+	lnc-CLIC6-1	lnc-CLIC6-1:1	XLOC_013927	linc-CBR1-3	NA	NA	NA	inter
CUST_33031_PI429285431	10.361546	P	10.257688	P	1.07464339383236	0	lncRNA	34645-1_{1..718}	n339718|AF095854|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2163|NULL|-0.9644640|-0.2535209	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339718|AF095854|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2163|NULL|-0.9644640|-0.2535209	chr20	 49714681	 49715398	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29348_PI429285431	3.7976456	P	3.0702825	P	1.65561026659932	0	lncRNA	31100-1_{1..1049}	n332602|AK026365|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000009639|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000009639|-1.4244800|-0.3931728	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332602|AK026365|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000009639|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000009639|-1.4244800|-0.3931728	chr1	246830009	246831057	+	NA	NA	NA	NA	CNST	NA	chr1:246820009-246831884	inner
CUST_31487_PI429285431	0.9122309	A	1.7027675	A	0.578129021044485	0	lncRNA	33251-1_{1..538}	n337965|BC019907|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|350|NULL|1.2813800|-0.3125886	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337965|BC019907|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|350|NULL|1.2813800|-0.3125886	chr22	 21356900	 21357437	-	NA	NA	NA	NA	LZTR1	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30chr22:21346900-21353326"	NA	inter
CUST_38623_PI429285431	2.6852648	A	1.9600873	A	1.65310401117545	0	lncRNA	39627-1_{1..892}	n383795|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vbd.1||0.2019860|-0.3013908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383795|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vbd.1||0.2019860|-0.3013908	chr2	206983254	206984145	-	NA	NA	NA	NA	NDUFS1	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.11;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20chr2:206987803-206994146"	NA	inter
CUST_31328_PI429285431	9.045805	P	9.148071	P	0.931568653496105	0	lncRNA	33111-1_{1..2680}	n337795|AK091670|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|177|NULL|-1.1080700|-0.2541751	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337795|AK091670|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|177|NULL|-1.1080700|-0.2541751	chrX	100516804	100519483	+	NA	NA	NA	NA	TAF7L	NA	chrX:100523241-100529485	inner
CUST_5705_PI429285431	2.7442284	A	2.8499207	A	0.929358868063463	0	lncRNA	5629-1_{1..737}	"transcript_id ""ENST00000574520.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000574520.2"" | genecode_v17"	chr17	  1898908	  1899644	+	ENSG00000262445.2	ENST00000574520.2	CTD-2545H1.2	CTD-2545H1.2-001	RTN4RL1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30chr17:1888908-1916832"	NA	inner
CUST_32829_PI429285431	1.5603197	A	2.1725016	A	0.654206545894506	0	lncRNA	34463-2_{3001..3230}	n339478|AK026743|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1918|NULL|-1.2072600|-0.3454749	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339478|AK026743|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1918|NULL|-1.2072600|-0.3454749	chr21	 36317113	 36317342	-	NA	NA	NA	NA	RUNX1	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80chr21:36304113-36327337"	NA	inner
CUST_18088_PI429285431	0.91313666	A	0.9155633	A	0.998319395126385	0	lncRNA	19823-1_{1..316}	lnc-CEP350-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEP350-1:1	chr1	180103701	180104016	+	lnc-CEP350-1	lnc-CEP350-1:1	XLOC_000476	linc-QSOX1	NA	NA	NA	inter
CUST_41529_PI429285431	7.621569	P	7.4868894	P	1.09784897162872	0	lncRNA	42781-1_{1..63}	ENST00000580839 ncrna:miRNA chromosome:GRCh37:16:83541951:83542013:1 gene:ENSG00000263785 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580839 ncrna:miRNA chromosome:GRCh37:16:83541951:83542013:1 gene:ENSG00000263785 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 83541951	 83542013	+	ENSG00000263785	ENST00000580839	NA	NA	CDH13	NA	chr16:83531951-83552013	inner
CUST_22028_PI429285431	0.9228911	A	0.9230898	A	0.999862281139336	0	lncRNA	23636-1_{1..353}	lnc-TASP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TASP1-3:1	chr20	 13000308	 13000660	-	lnc-TASP1-3	lnc-TASP1-3:1	ENSG00000238144.1	RP11-157E14.3	SPTLC3	NA	chr20:12990308-13010437	inner
CUST_12732_PI429285431	1.5314867	A	1.5258539	A	1.00391199137935	0	lncRNA	14357-1_{1..1766}	lnc-SUPT3H-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUPT3H-1:8	chr6	 45544322	 45546087	-	lnc-SUPT3H-1	lnc-SUPT3H-1:8	XLOC_005737	linc-SUPT3H	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.31;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20"	NA	inter
CUST_2521_PI429285431	0.905419	A	0.897803	A	1.00529296744634	0	lncRNA	2509-1_{1..497}	"transcript_id ""ENST00000427609.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427609.2"" | genecode_v17"	chr6	 36907847	 36908343	-	ENSG00000232598.2	ENST00000427609.2	RP1-90K10.4	RP1-90K10.4-001	PI16	NA	chr6:36916039-36922451	inter
CUST_43456_PI429285431	1.5732757	A	1.2996832	A	1.208814189003	0	lncRNA	48260-1_{1..1267}	"gi|356460918|ref|NR_045483.1| Homo sapiens fatty acid amide hydrolase pseudogene (LOC729041), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|356460918|ref|NR_045483.1| Homo sapiens fatty acid amide hydrolase pseudogene (LOC729041), non-coding RNA"	Chr1	 46899499	 46900765	+	729041	NR_045483.1	NA	NA	NA	NA	NA	inter
CUST_4017_PI429285431	7.366588	P	7.482026	P	0.923102015827874	0	lncRNA	3978-1_{1..831}	"transcript_id ""ENST00000528781.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000528781.1"" | genecode_v17"	chr11	 76336506	 76337336	-	ENSG00000255479.1	ENST00000528781.1	RP11-672A2.6	RP11-672A2.6-001	NA	NA	NA	inter
CUST_25486_PI429285431	2.5497637	A	3.5431597	P	0.502294018469708	0	lncRNA	27016-1_{1..304}	lnc-RABGEF1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RABGEF1-2:3	chr7	 66134730	 66135033	+	lnc-RABGEF1-2	lnc-RABGEF1-2:3	ENSG00000226824.2	RP4-756H11.3	NA	NA	NA	inter
CUST_47950_PI429285431	1.6864352	A	1.0725881	A	1.53033457299707	0	lncRNA	51842-1_{1..2492}	"gi|410172530|ref|XR_171839.1| PREDICTED: Homo sapiens uncharacterized LOC100507213 (LOC100507213), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|410172530|ref|XR_171839.1| PREDICTED: Homo sapiens uncharacterized LOC100507213 (LOC100507213), misc_RNA"	NA	NA	NA	NA	NA	XR_171839.1	NA	NA	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30"	NA	Unknown
CUST_858_PI429285431	6.445115	P	6.426589	P	1.01292404750023	0	lncRNA	852-1_{1..803}	"transcript_id ""ENST00000449766.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000449766.1"" | genecode_v17"	chr2	 43259640	 43260442	-	ENSG00000231826.1	ENST00000449766.1	AC016735.2	AC016735.2-002	NA	NA	NA	inter
LNCA_21_P0005884	0.92559737	A	0.9089169	A	1.01162911926161	0	lncRNA	TCONS_00015134	NA	NA	NA	NA	XLOC_007181	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007181), lincRNA [TCONS_00015134]"	chr8:109928168-109928109	hs|8q23.1	Agilent_HUMAN_G3V2	TCONS_00015134	TCONS_00015134	chr8	109928109	109928168	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17375_PI429285431	0.8965227	A	1.0979599	A	0.869683760370956	0	lncRNA	19096-1_{1..827}	lnc-MTHFSD-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTHFSD-5:2	chr16	 86755371	 86756197	-	lnc-MTHFSD-5	lnc-MTHFSD-5:2	XLOC_012048	linc-MTHFSD-6	NA	NA	NA	inter
CUST_6847_PI429285431	1.7618866	A	2.2199218	A	0.727977012531335	0	lncRNA	6795-1_{1..428}	"transcript_id ""ENST00000414877.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414877.1"" | genecode_v17"	chr21	 33452629	 33453056	-	ENSG00000230323.1	ENST00000414877.1	LINC00159	LINC00159-001	NA	NA	NA	inter
CUST_10914_PI429285431	6.115943	P	7.047769	P	0.524194455786282	0	lncRNA	12458-1_{1..397}	lnc-LRRK1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRK1-2:1	chr15	101709228	101709624	+	lnc-LRRK1-2	lnc-LRRK1-2:1	XLOC_011389	linc-OR4F6-2	CHSY1	NA	chr15:101715928-101719271	inter
CUST_13009_PI429285431	0.9380727	A	0.92915964	A	1.00619718599869	0	lncRNA	14635-1_{1..908}	lnc-AC073348.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC073348.1-3:1	chr7	112698874	112699781	+	lnc-AC073348.1-3	lnc-AC073348.1-3:1	XLOC_006213	linc-FOXP2-2	NA	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20"	NA	inter
CUST_17982_PI429285431	3.4493685	P	3.518074	P	0.953493163741971	0	lncRNA	19715-1_{1..256}	lnc-SMC1B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMC1B-2:1	chr22	 45894644	 45894899	-	lnc-SMC1B-2	lnc-SMC1B-2:1	XLOC_014397	linc-SMC1B-2	FBLN1	NA	chr22:45898719-45904662	inter
CUST_22620_PI429285431	0.90804636	A	0.90054154	A	1.0052154984301	0	lncRNA	24206-1_{1..414}	lnc-FCRL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FCRL3-1:1	chr1	157646466	157646879	-	lnc-FCRL3-1	lnc-FCRL3-1:1	ENSG00000241609.1	RP11-367J7.2	FCRL3	NA	chr1:157647978-157656522	inter
CUST_3409_PI429285431	1.1160347	A	1.649029	A	0.691118833827202	0	lncRNA	3381-1_{1..789}	"transcript_id ""ENST00000590863.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590863.1"" | genecode_v17"	chr9	 42470339	 42471127	+	ENSG00000223839.3	ENST00000590863.1	FAM95B1	FAM95B1-004	CBWD7	NA	chr9:42478004-42484152	inter
CUST_33810_PI429285431	0.8972762	A	1.0532647	A	0.897517204921229	0	lncRNA	35360-2_{3001..3251}	n340597|CR627150|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3059|NULL|-1.1678400|-0.3408608	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340597|CR627150|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3059|NULL|-1.1678400|-0.3408608	chr5	117689660	117689910	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18501_PI429285431	9.233043	P	9.732136	P	0.707551468023823	0	lncRNA	20216-1_{1..884}	lnc-HIC2-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-HIC2-1:10	chr22	 21823906	 21824789	+	lnc-HIC2-1	lnc-HIC2-1:10	ENSG00000206140	KB-1323B2.6	TMEM191C	NA	chr22:21821459-21824224	inner
CUST_24556_PI429285431	3.8112907	P	3.1991677	P	1.52850683127481	0	lncRNA	26105-1_{1..485}	lnc-CEP170-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CEP170-1:8	chr1	243254692	243255176	-	lnc-CEP170-1	lnc-CEP170-1:8	ENSG00000214837.3	RP11-261C10.3	NA	NA	NA	inter
CUST_40174_PI429285431	3.2449288	P	2.9550223	A	1.22256104184637	0	lncRNA	41009-1_{1..3000}	n407919|NR_027489|lncRNA|Homosapiens||RefGeneNoncode|NR_027489||6.1045800|-0.1425622	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407919|NR_027489|lncRNA|Homosapiens||RefGeneNoncode|NR_027489||6.1045800|-0.1425622	chr16	 86563781	 86566780	-	NA	NA	NA	NA	MTHFSD	NA	chr16:86559041-86588841	inner
CUST_47911_PI429285431	0.9088422	A	0.9046874	A	1.00288403876668	0	lncRNA	51802-2_{3001..3822}	"gi|410171988|ref|XR_171519.1| PREDICTED: Homo sapiens putative POM121-like protein 1-like (LOC101060558), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171988|ref|XR_171519.1| PREDICTED: Homo sapiens putative POM121-like protein 1-like (LOC101060558), misc_RNA"	NA	NA	NA	NA	NA	XR_171519.1	NA	NA	NA	NA	NA	Unknown
CUST_16469_PI429285431	0.8965072	A	1.1405643	A	0.84436746779235	0	lncRNA	18167-1_{1..450}	lnc-NELL1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NELL1-1:3	chr11	 21864351	 21864800	+	lnc-NELL1-1	lnc-NELL1-1:3	XLOC_009085	linc-ANO5-3	NA	NA	NA	inter
CUST_39941_PI429285431	5.5986295	P	5.577452	P	1.01478739187161	0	lncRNA	40816-1_{1..2922}	n406898|NR_024386|lncRNA|Homosapiens||RefGeneNoncode|NR_024386||11.3775000|-0.1173794	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406898|NR_024386|lncRNA|Homosapiens||RefGeneNoncode|NR_024386||11.3775000|-0.1173794	chr17	 62780958	 62783879	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16315_PI429285431	0.89109635	A	0.88888764	A	1.00153213362842	0	lncRNA	18021-1_{1..730}	lnc-SRP9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRP9-1:2	chr1	225898205	225898934	+	lnc-SRP9-1	lnc-SRP9-1:2	XLOC_000587	linc-SRP9-1	NA	NA	NA	inter
CUST_37784_PI429285431	0.9019804	A	0.90051264	A	1.00101789140592	0	lncRNA	38882-2_{3001..6000}	n346296|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1846|NULL|-1.2991100|-0.3277946	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n346296|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1846|NULL|-1.2991100|-0.3277946	chr5	 90600137	 90603136	-	NA	NA	NA	NA	NA	"hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.61;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_42930_PI429285431	10.196982	P	10.44117	P	0.844290859303169	0	lncRNA	46042-1_{1..135}	ENST00000390912 ncrna:snoRNA chromosome:GRCh37:X:3450158:3450292:-1 gene:ENSG00000212214 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390912 ncrna:snoRNA chromosome:GRCh37:X:3450158:3450292:-1 gene:ENSG00000212214 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	  3450158	  3450292	-	ENSG00000212214	ENST00000390912	NA	NA	NA	NA	NA	inter
LNCA_21_P0004850	1.6919732	A	1.9494768	A	0.836534183627857	0	lncRNA	TCONS_00011716	NA	NA	NA	NA	XLOC_005194	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005194), lincRNA [TCONS_00011716]"	chr6:20333178-20333237	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00011716	TCONS_00011716	chr6	 20333178	 20333237	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33402_PI429285431	6.7215395	P	7.037257	P	0.803451308432197	0	lncRNA	34981-1_{1..1896}	n340124|BC019674|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2583|NULL|-1.0243600|-0.1851616	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340124|BC019674|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2583|NULL|-1.0243600|-0.1851616	chr10	102849077	102850972	-	NA	NA	NA	NA	TLX1	NA	chr10:102891061-102897546	inner
CUST_24197_PI429285431	3.8562922	P	4.217209	P	0.778669595522042	0	lncRNA	25748-1_{1..2517}	lnc-TMEM178-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TMEM178-1:4	chr2	 39826506	 39829022	+	lnc-TMEM178-1	lnc-TMEM178-1:4	ENSG00000231312.2	AC007246.3	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40"	NA	inter
CUST_9833_PI429285431	0.8982532	A	0.917194	A	0.986957044159282	0	lncRNA	11354-1_{1..760}	lnc-AC068473.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC068473.1-1:1	chr18	 77345190	 77345949	-	lnc-AC068473.1-1	lnc-AC068473.1-1:1	XLOC_012904	linc-MBP-2	NA	NA	NA	inter
CUST_51067_PI429285431	0.9009588	A	0.90134805	A	0.999730228854748	0	lncRNA	54704-1_{1..253}	hg19_lincRNAsTranscripts_TCONS_l2_00006779 range=chr13:32515471-32520365 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006779 range=chr13:32515471-32520365 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 32515471	 32515723	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43097_PI429285431	0.9181484	A	0.8995909	A	1.01294616406328	0	lncRNA	47493-1_{1..156}	ENST00000516692 ncrna:snRNA chromosome:GRCh37:1:233584372:233584527:-1 gene:ENSG00000252501 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516692 ncrna:snRNA chromosome:GRCh37:1:233584372:233584527:-1 gene:ENSG00000252501 gene_biotype:snRNA transcript_biotype:snRNA	chr1	233584372	233584527	-	ENSG00000252501	ENST00000516692	NA	NA	NA	NA	NA	inter
CUST_45389_PI429285431	1.0040672	A	0.9102541	A	1.06718707584376	0	lncRNA	49819-3_{6001..8030}	"gi|190570167|ref|NR_023390.1| Homo sapiens long intergenic non-protein coding RNA 476 (LINC00476), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|190570167|ref|NR_023390.1| Homo sapiens long intergenic non-protein coding RNA 476 (LINC00476), transcript variant 1, non-coding RNA"	Chr9	 98574370	 98576399	-	100128782	NR_023390.1	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
CUST_32457_PI429285431	6.4467545	P	5.8203173	P	1.54374792764625	0	lncRNA	34128-1_{1..2149}	n339058|S73885|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1487|NULL|6.7510700|-0.0795312	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339058|S73885|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1487|NULL|6.7510700|-0.0795312	chr16	  4307186	  4309334	-	NA	NA	NA	NA	TFAP4	NA	chr16:4307187-4323001	inner
LNCA_21_P0002089	5.449649	P	5.3128653	P	1.09945129871389	0	lncRNA	ENST00000417284	NA	NA	NA	NA	XLOC_002254	NA	ENST00000417284	THC2538017	NA	"BROAD Institute lincRNA (XLOC_002254), lincRNA [TCONS_00003363]"	chr2:108441029-108440595	hs|2q12.3	Agilent_HUMAN_G3V2	ENST00000417284	ENST00000417284	chr2	108440595	108441029	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47631_PI429285431	0.8945696	A	1.4790642	A	0.666882917776258	0	lncRNA	51621-1_{1..2879}	"gi|337298625|ref|NR_038978.1| Homo sapiens MORF4L2 antisense RNA 1 (MORF4L2-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|337298625|ref|NR_038978.1| Homo sapiens MORF4L2 antisense RNA 1 (MORF4L2-AS1), non-coding RNA"	ChrX	102942212	102945090	+	340544	NR_038978.1	NA	NA	NA	NA	NA	inter
CUST_48763_PI429285431	2.286056	A	0.9293736	A	2.56095588269351	0	lncRNA	52600-2_{3001..4576}	hg19_lincRNAsTranscripts_TCONS_l2_00014965 range=chr2:162359313-162364091 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014965 range=chr2:162359313-162364091 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	162362313	162363888	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21509_PI429285431	0.9148708	A	0.90382683	A	1.00768447182891	0	lncRNA	23127-1_{1..1776}	lnc-IKZF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-IKZF1-1:1	chr7	 50609943	 50611718	+	lnc-IKZF1-1	lnc-IKZF1-1:1	ENSG00000226122.1	AC018705.5	DDC	"hg19_refFlat_DDC:range=chr7:50530929-506117835'pad=0,hg19_refFlat_DDC:range=chr7:50530929-506117835'pad=0 3'pad=0 strand=- repeatMasking=none,-95.10;hg19_refFlat_DDC:range=chr7:50560631-506117835'pad=0,hg19_refFlat_DDC:range=chr7:50560631-506117835'pad=0 3'pad=0 strand=- repeatMasking=none,-95.10chr7:50599943-50621161"	NA	inner
CUST_16245_PI429285431	2.1681027	A	1.4786161	A	1.61270951466702	0	lncRNA	17950-2_{3001..3663}	lnc-CRIPAK-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRIPAK-1:3	chr4	  1553083	  1553745	+	lnc-CRIPAK-1	lnc-CRIPAK-1:3	XLOC_003422	linc-TACC3	NA	NA	NA	inter
CUST_23983_PI429285431	3.7934632	P	3.9174225	P	0.917665770298064	0	lncRNA	25538-1_{1..465}	lnc-LAMP5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LAMP5-1:1	chr20	  9558007	  9558471	+	lnc-LAMP5-1	lnc-LAMP5-1:1	ENSG00000232738.1	RP5-986I17.2	PAK7	NA	chr20:9548007-9568336	inner
CUST_29287_PI429285431	12.300997	P	12.092017	P	1.15587068267363	0	lncRNA	31038-1_{1..461}	n332411|AB439566|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000487365|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000487365|-0.5120030|-0.0846593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332411|AB439566|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000487365|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000487365|-0.5120030|-0.0846593	chr2	 85886446	 85886906	-	NA	NA	NA	NA	SFTPB	NA	chr2:85884440-85895864	inner
LNCA_21_P0011217	0.9252369	A	0.91294175	A	1.00855876715333	0	lncRNA	AK091626	NA	AK091626	NA	Hs.380803	XLOC_l2_003903	NA	NA	THC2498598	NA	"BROAD Institute lincRNA (XLOC_l2_003903), lincRNA [TCONS_l2_00007494]"	chr13:23430487-23430428	hs|13q12.12	Agilent_HUMAN_G3V2	AK091626	AK091626	chr13	 23430428	 23430487	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9656_PI429285431	1.4038599	A	0.90753204	A	1.41061849449842	0	lncRNA	11173-2_{3001..4938}	lnc-KB-1448A5.1.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KB-1448A5.1.1-1:3	chr8	 97401610	 97403547	-	lnc-KB-1448A5.1.1-1	lnc-KB-1448A5.1.1-1:3	XLOC_007166	linc-MTERFD1	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10"	NA	inter
CUST_3058_PI429285431	1.1866977	A	0.9029883	A	1.21732079077893	0	lncRNA	3037-1_{1..766}	"transcript_id ""ENST00000523063.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523063.1"" | genecode_v17"	chr8	 33462374	 33463139	+	ENSG00000253642.1	ENST00000523063.1	RP11-317N12.1	RP11-317N12.1-003	DUSP26	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr8:33452374-33457439"	NA	inter
CUST_20592_PI429285431	0.92094374	A	0.9161389	A	1.0033360134473	0	lncRNA	22231-1_{1..349}	lnc-ST7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ST7-1:1	chr7	116962112	116962460	+	lnc-ST7-1	lnc-ST7-1:1	ENSG00000238202.1	AC002465.2	WNT2	NA	chr7:116952112-116963343	inner
CUST_26170_PI429285431	0.90636206	A	0.9014854	A	1.00338596259393	0	lncRNA	27681-1_{1..445}	lnc-CARD18-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CARD18-2:1	chr11	105402329	105402773	-	lnc-CARD18-2	lnc-CARD18-2:1	ENSG00000254998.1	RP11-94P11.4	NA	NA	NA	inter
CUST_33551_PI429285431	9.200199	P	9.132021	P	1.04839181832787	0	lncRNA	35119-1_{1..945}	n340300|BC061593|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2761|NULL|1.1115900|-0.0927175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340300|BC061593|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2761|NULL|1.1115900|-0.0927175	chr5	   667578	   668522	+	NA	NA	NA	NA	TPPP	NA	chr5:659977-678841	inner
CUST_31542_PI429285431	4.531493	P	4.5550437	P	0.983808414787958	0	lncRNA	33301-1_{1..1594}	n338030|BC041349|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|417|NULL|-1.1424300|-0.2589645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n338030|BC041349|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|417|NULL|-1.1424300|-0.2589645	chr22	 32772650	 32774243	+	NA	NA	NA	NA	C22orf28	NA	chr22:32783562-32790330	inter
LNCA_21_P0004378	0.9316687	A	0.91992456	A	1.00817364081717	0	lncRNA	TCONS_00010304	NA	NA	NA	NA	XLOC_004787	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004787), lincRNA [TCONS_00010304]"	chr5:37072405-37072346	hs|5p13.2	Agilent_HUMAN_G3V2	TCONS_00010304	TCONS_00010304	chr5	 37072346	 37072405	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49106_PI429285431	0.959381	A	0.9411304	A	1.01273070611427	0	lncRNA	52930-1_{1..795}	hg19_lincRNAsTranscripts_TCONS_l2_00021111 range=chr4:38607544-38609799 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021111 range=chr4:38607544-38609799 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 38607544	 38608338	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49513_PI429285431	0.93085027	A	0.9396372	A	0.99392787456773	0	lncRNA	53305-1_{1..331}	hg19_lincRNAsTranscripts_TCONS_l2_00024682 range=chr6:28281281-28283677 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024682 range=chr6:28281281-28283677 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 28281281	 28281611	-	NA	NA	NA	NA	ZNF323	NA	chr6:28292514-28293677	inter
CUST_39609_PI429285431	2.9807134	A	1.7367797	A	2.3684343782458	0	lncRNA	40551-1_{1..3000}	n387663|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kwn.1||1.3550400|-0.2245321	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387663|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kwn.1||1.3550400|-0.2245321	chr8	  7118141	  7121140	-	NA	NA	NA	NA	FAM90A15	NA	chr8:7108141-7117436	inter
CUST_34779_PI429285431	4.184721	P	4.832353	P	0.638327186975797	0	lncRNA	36216-1_{1..265}	n341686|AF086013|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4157|NULL|-1.2280200|-0.6074626	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341686|AF086013|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4157|NULL|-1.2280200|-0.6074626	chr9	 37340150	 37340414	-	NA	NA	NA	NA	ZCCHC7	NA	chr9:37330150-37350415	inner
CUST_24303_PI429285431	7.4834843	P	7.594743	P	0.925779999387641	0	lncRNA	25854-1_{1..544}	lnc-MED13L-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MED13L-4:1	chr12	116077450	116077993	-	lnc-MED13L-4	lnc-MED13L-4:1	ENSG00000257407.1	RP11-1028N23.4	NA	NA	NA	inter
CUST_25246_PI429285431	4.3886833	P	4.6424456	P	0.838706359227296	0	lncRNA	26776-1_{1..931}	lnc-EVX1-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EVX1-5:5	chr7	 27228220	 27229150	+	lnc-EVX1-5	lnc-EVX1-5:5	ENSG00000240990.4	HOXA11-AS	HOXA10	NA	chr7:27218220-27219880	inter
CUST_2584_PI429285431	2.6245642	A	2.885593	A	0.834492622314332	0	lncRNA	2572-1_{1..578}	"transcript_id ""ENST00000574739.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000574739.1"" | genecode_v17"	chr6	 97753462	 97754039	+	ENSG00000226684.2	ENST00000574739.1	RP3-418C23.2	RP3-418C23.2-003	NA	NA	NA	inter
CUST_4726_PI429285431	4.9080324	P	3.0238638	P	3.69140133960386	0	lncRNA	4671-1_{1..903}	"transcript_id ""ENST00000553153.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553153.1"" | genecode_v17"	chr14	 19880596	 19881498	-	ENSG00000244306.5	ENST00000553153.1	CTD-2314B22.3	CTD-2314B22.3-006	NA	"hg19_refFlat_TIGD1:range=chr2:233412817-2334145925'pad=0,hg19_refFlat_TIGD1:range=chr2:233412817-2334145925'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90"	NA	inter
CUST_17029_PI429285431	0.99261785	A	0.922827	A	1.04956451540679	0	lncRNA	18740-1_{1..940}	lnc-ONECUT1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ONECUT1-1:3	chr15	 53097866	 53098805	-	lnc-ONECUT1-1	lnc-ONECUT1-1:3	XLOC_011481	linc-ONECUT1	NA	NA	NA	inter
CUST_12698_PI429285431	2.6522565	A	0.9105011	A	3.34441852615878	0	lncRNA	14315-1_{1..598}	lnc-MRAP2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRAP2-2:2	chr6	 84716534	 84717131	+	lnc-MRAP2-2	lnc-MRAP2-2:2	XLOC_005371	linc-MRAP2-2	NA	NA	NA	inter
CUST_63_PI429285431	2.9542303	A	3.3522036	P	0.758923671780008	0	lncRNA	62-1_{1..400}	"transcript_id ""ENST00000419151.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419151.2"" | genecode_v17"	chr17	 16891643	 16892042	+	ENSG00000230969.2	ENST00000419151.2	AC104024.2	AC104024.2-001	NA	NA	NA	inter
CUST_17111_PI429285431	0.90965873	A	1.1633667	A	0.838737944401717	0	lncRNA	18821-1_{1..339}	lnc-INSC-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INSC-3:3	chr11	 15948778	 15949116	+	lnc-INSC-3	lnc-INSC-3:3	XLOC_009075	linc-C11orf58-2	NA	NA	NA	inter
CUST_1705_PI429285431	2.257292	A	2.025539	A	1.17426091189957	0	lncRNA	1689-1_{1..317}	"transcript_id ""ENST00000514863.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514863.1"" | genecode_v17"	chr4	 14166079	 14166395	+	ENSG00000249988.1	ENST00000514863.1	RP11-669M16.1	RP11-669M16.1-001	NA	NA	NA	inter
CUST_49344_PI429285431	0.9149388	A	1.0868939	A	0.887638962213156	0	lncRNA	53157-1_{1..619}	hg19_lincRNAsTranscripts_TCONS_l2_00022962 range=chr5:74376179-74400141 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022962 range=chr5:74376179-74400141 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 74376179	 74376797	-	NA	NA	NA	NA	ANKRD31	NA	chr5:74366179-74410141	inner
CUST_38193_PI429285431	0.97141236	A	1.000791	A	0.979842218819021	0	lncRNA	39260-1_{1..2628}	n381509|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kas.1||1.4963300|-0.3744399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381509|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kas.1||1.4963300|-0.3744399	chr10	 81522330	 81524957	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45276_PI429285431	0.9429838	A	3.0723286	A	0.228561640266643	0	lncRNA	49724-1_{1..472}	"gi|310120268|ref|XR_108890.1| PREDICTED: Homo sapiens uncharacterized LOC100507162 (LOC100507162), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120268|ref|XR_108890.1| PREDICTED: Homo sapiens uncharacterized LOC100507162 (LOC100507162), misc_RNA"	NA	NA	NA	NA	NA	XR_108890.1	NA	NA	NA	NA	NA	Unknown
CUST_36293_PI429285431	5.8564677	P	5.837455	P	1.01326581986762	0	lncRNA	37524-1_{1..1079}	n344819|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_368|NULL|-1.2996100|-0.2370886	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344819|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_368|NULL|-1.2996100|-0.2370886	chr14	 34509336	 34510414	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43432_PI429285431	4.759299	P	3.9600067	P	1.74024725583959	0	lncRNA	48240-1_{1..1893}	"gi|333609258|ref|NR_038260.1| Homo sapiens human immunodeficiency virus type I enhancer binding protein 3 (HIVEP3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333609258|ref|NR_038260.1| Homo sapiens human immunodeficiency virus type I enhancer binding protein 3 (HIVEP3), transcript variant 3, non-coding RNA"	Chr1	 42312860	 42314752	-	59269	NR_038260.1	NA	NA	NA	NA	NA	inter
CUST_27285_PI429285431	0.97511595	A	0.9294395	A	1.03216702772649	0	lncRNA	28841-1_{1..528}	n324434|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041682|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041682|-0.3210480|-0.2485725	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324434|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041682|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041682|-0.3210480|-0.2485725	chr6	107301817	107302344	-	NA	NA	NA	NA	C6orf203	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60chr6:107349407-107352003"	NA	inter
CUST_29977_PI429285431	3.110155	A	3.5126665	P	0.756540121576739	0	lncRNA	31743-1_{1..208}	n334233|S63836|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216034|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216034|0.3532710|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334233|S63836|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216034|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216034|0.3532710|-1.0000000	chr1	 41945125	 41945332	-	NA	NA	NA	NA	EDN2	NA	chr1:41944446-41950344	inner
CUST_44358_PI429285431	0.9306035	A	0.9344967	A	0.997305077238261	0	lncRNA	48978-1_{1..1644}	"gi|336391110|ref|NR_038857.1| Homo sapiens uncharacterized LOC441009 (LOC441009), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336391110|ref|NR_038857.1| Homo sapiens uncharacterized LOC441009 (LOC441009), non-coding RNA"	Chr4	 14911585	 14913228	-	441009	NR_038857.1	NA	NA	NA	NA	NA	inter
CUST_35488_PI429285431	1.3447376	A	1.4833972	A	0.90836271816972	0	lncRNA	36895-1_{1..2516}	n342585|AK096470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5085|NULL|-0.9640520|-0.2303827	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342585|AK096470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5085|NULL|-0.9640520|-0.2303827	chr4	 48341836	 48344351	-	NA	NA	NA	NA	SLAIN2	"hg19_refFlat_SLAIN2:range=chr4:48343757-484240945'pad=0,hg19_refFlat_SLAIN2:range=chr4:48343757-484240945'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.10;hg19_refFlat_SLAIN1:range=chr13:78272049-783373555'pad=0,hg19_refFlat_SLAIN1:range=chr13:78272049-783373555'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70chr4:48343613-48354353"	NA	inner
CUST_42685_PI429285431	8.089523	P	8.35635	P	0.831145521986476	0	lncRNA	45605-1_{1..132}	ENST00000384416 ncrna:snoRNA chromosome:GRCh37:11:93466632:93466763:-1 gene:ENSG00000207145 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384416 ncrna:snoRNA chromosome:GRCh37:11:93466632:93466763:-1 gene:ENSG00000207145 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 93466632	 93466763	-	ENSG00000207145	ENST00000384416	NA	NA	KIAA1731	NA	chr11:93456632-93463522	inter
CUST_850_PI429285431	3.9478226	A	4.1143622	A	0.890977188303915	0	lncRNA	844-1_{1..451}	"transcript_id ""ENST00000437979.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437979.1"" | genecode_v17"	chr2	 38685779	 38686229	-	ENSG00000231367.1	ENST00000437979.1	AC016995.3	AC016995.3-003	NA	NA	NA	inter
CUST_49144_PI429285431	4.434991	P	4.6747355	P	0.846895283478682	0	lncRNA	52971-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00021264 range=chr4:120328645-120334655 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021264 range=chr4:120328645-120334655 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	120328645	120331644	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32147_PI429285431	6.5844316	P	6.926871	P	0.788706588792266	0	lncRNA	33847-1_{1..2044}	n338714|BC020346|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1134|NULL|1.6657700|-0.1913600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338714|BC020346|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1134|NULL|1.6657700|-0.1913600	chr19	 45836691	 45838734	-	NA	NA	NA	NA	ERCC2	"hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_KLC3:range=chr19:45848800-458546155'pad=0,hg19_refFlat_KLC3:range=chr19:45848800-458546155'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40chr19:45854649-45863645"	NA	inner
CUST_9722_PI429285431	0.9275161	A	0.9237369	A	1.0026229758223	0	lncRNA	11238-1_{1..346}	lnc-TMEM132B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132B-2:2	chr12	126511752	126512097	+	lnc-TMEM132B-2	lnc-TMEM132B-2:2	XLOC_009934	linc-TMEM132C-15	NA	NA	NA	inter
CUST_29882_PI429285431	2.505605	A	2.0217755	A	1.39845080182678	0	lncRNA	31645-1_{1..249}	n333907|L40366|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193598|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193598|0.8078160|-0.0253006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333907|L40366|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193598|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193598|0.8078160|-0.0253006	chr17	 37566361	 37566609	-	NA	NA	NA	NA	FBXL20	NA	chr17:37556361-37557909	inner
LNCA_21_P0003187	2.2751203	A	2.417695	A	0.905900999192593	0	lncRNA	TCONS_00006704	NA	NA	NA	NA	XLOC_003318	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003318), lincRNA [TCONS_00006704]"	chr3:166643432-166641818	hs|3q26.1	Agilent_HUMAN_G3V2	TCONS_00006704	TCONS_00006704	chr3	166641818	166643432	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38217_PI429285431	5.071715	P	5.478877	P	0.754105355216719	0	lncRNA	39282-1_{1..1387}	n381590|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lub.1||2.4632200|-0.0665336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381590|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lub.1||2.4632200|-0.0665336	chr11	  1756059	  1757445	-	NA	NA	NA	NA	IFITM10	NA	chr11:1753640-1771824	inner
CUST_35962_PI429285431	10.219202	P	10.168472	P	1.035788897798	0	lncRNA	37313-2_{3001..3331}	n344588|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_136|NULL|-1.5526600|-0.1498977	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344588|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_136|NULL|-1.5526600|-0.1498977	chr21	 44883077	 44883407	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23611_PI429285431	0.9148669	A	1.1445163	A	0.85284212206305	0	lncRNA	25178-1_{1..871}	lnc-FBXL5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXL5-1:1	chr4	 15421553	 15422423	-	lnc-FBXL5-1	lnc-FBXL5-1:1	ENSG00000251379.1	RP11-484O2.1	C1QTNF7	"hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70chr4:15411553-15431656"	NA	inner
CUST_17683_PI429285431	4.3787804	P	4.3902884	P	0.992054991996031	0	lncRNA	19412-1_{1..668}	lnc-TM2D3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TM2D3-2:1	chr15	102041825	102042492	-	lnc-TM2D3-2	lnc-TM2D3-2:1	XLOC_011615	linc-PCSK6-1	NA	NA	NA	inter
CUST_51987_PI429285431	0.8975531	A	0.9613029	A	0.95677407265433	0	lncRNA	55523-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017151 range=chr21:16206963-16254319 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017151 range=chr21:16206963-16254319 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 16206963	 16209962	-	NA	NA	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20"	NA	inter
CUST_43305_PI429285431	0.9068467	A	1.543045	A	0.64340618069427	0	lncRNA	48136-1_{1..305}	ENST00000576417 ncrna:misc_RNA chromosome:GRCh37:HSCHR15_1_CTG4:28632285:28632589:1 gene:ENSG00000262405 gene_biotype:misc_RNA transcript_biotype:misc_RNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"gencode_v17,ensembl.GRCh37.72,"	>ENST00000576417 ncrna:misc_RNA chromosome:GRCh37:HSCHR15_1_CTG4:28632285:28632589:1 gene:ENSG00000262405 gene_biotype:misc_RNA transcript_biotype:misc_RNA	chrHSCHR15_1_CTG4	 28632285	 28632589	+	ENSG00000262405	ENST00000576417	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009024	1.0307342	A	0.9221616	A	1.07816097799646	0	lncRNA	TCONS_00024635	NA	NA	NA	NA	XLOC_011926	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011926), lincRNA [TCONS_00024635]"	chr16:34259839-34259780	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_00024635	TCONS_00024635	chr16	 34259780	 34259839	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3136_PI429285431	3.9801266	P	3.9079576	P	1.05129605266416	0	lncRNA	3115-1_{1..580}	"transcript_id ""ENST00000529234.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000529234.1"" | genecode_v17"	chr8	 61823149	 61823728	+	ENSG00000254777.1	ENST00000529234.1	AC022182.1	AC022182.1-001	NA	NA	NA	inter
CUST_18150_PI429285431	12.015589	P	11.930546	P	1.0607193559862	0	lncRNA	19884-2_{3001..3283}	lnc-RXFP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RXFP2-1:2	chr13	 32527296	 32527578	+	lnc-RXFP2-1	lnc-RXFP2-1:2	ENSG00000229715	EEF1DP3	NA	NA	NA	inter
CUST_11173_PI429285431	0.9568325	A	0.90496814	A	1.03660363653609	0	lncRNA	12730-1_{1..1851}	lnc-ANKRD46-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD46-1:3	chr8	101443122	101444972	-	lnc-ANKRD46-1	lnc-ANKRD46-1:3	XLOC_007170	linc-RNF19A	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10"	NA	inter
CUST_11716_PI429285431	3.6277032	P	3.9827793	P	0.781828401765098	0	lncRNA	13294-1_{1..295}	lnc-CCKAR-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCKAR-1:3	chr4	 26862132	 26862426	-	lnc-CCKAR-1	lnc-CCKAR-1:3	XLOC_003912	linc-CCKAR-11	STIM2	NA	chr4:26862313-26872203	inter
CUST_49712_PI429285431	0.9216291	A	0.9225642	A	0.999352048083025	0	lncRNA	53489-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026431 range=chr7:25694737-25815818 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026431 range=chr7:25694737-25815818 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 25694737	 25697736	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47582_PI429285431	2.2215092	A	0.90364456	A	2.49296847629963	0	lncRNA	51586-1_{1..2844}	"gi|298229000|ref|NR_033730.1| Homo sapiens zinc finger protein 630 (ZNF630), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298229000|ref|NR_033730.1| Homo sapiens zinc finger protein 630 (ZNF630), transcript variant 3, non-coding RNA"	ChrX	 47917567	 47920410	-	57232	NR_033730.1	NA	NA	NA	NA	NA	inter
CUST_15212_PI429285431	3.5329542	P	4.32762	P	0.576476698638167	0	lncRNA	16882-1_{1..1061}	lnc-TCF12-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF12-1:5	chr15	 57599740	 57600800	+	lnc-TCF12-1	lnc-TCF12-1:5	XLOC_011264	linc-CGNL1-2	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40"	NA	inter
CUST_23132_PI429285431	2.5939434	A	2.909368	A	0.803614443933433	0	lncRNA	24703-1_{1..531}	lnc-CLDN14-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CLDN14-2:1	chr21	 38178337	 38178867	-	lnc-CLDN14-2	lnc-CLDN14-2:1	ENSG00000237646.1	HLCS-IT1	HLCS	NA	chr21:38168337-38188585	inner
CUST_6442_PI429285431	4.1849914	P	4.638812	P	0.730106788902973	0	lncRNA	6383-1_{1..549}	"transcript_id ""ENST00000591828.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591828.1"" | genecode_v17"	chr19	 31910835	 31911383	+	ENSG00000267553.1	ENST00000591828.1	AC008992.2	AC008992.2-001	NA	NA	NA	inter
CUST_27621_PI429285431	0.9050648	A	0.9111432	A	0.995795637361698	0	lncRNA	29199-1_{1..514}	n324825|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171736|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171736|-1.1348500|-0.3177163	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324825|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171736|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171736|-1.1348500|-0.3177163	chr21	 28833510	 28834023	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40602_PI429285431	0.92372555	A	0.90793455	A	1.01100560812343	0	lncRNA	41348-1_{1..2597}	n410081|NR_036520|lncRNA|Homosapiens||RefGeneNoncode|NR_036520||0.2058990|-0.1168278	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410081|NR_036520|lncRNA|Homosapiens||RefGeneNoncode|NR_036520||0.2058990|-0.1168278	chr17	 73267379	 73269975	+	NA	NA	NA	NA	SLC25A19	"hg19_refFlat_SLC25A19:range=chr17:73269532-732828455'pad=0,hg19_refFlat_SLC25A19:range=chr17:73269532-732828455'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50chr17:73269061-73279976"	NA	inner
CUST_31447_PI429285431	3.739564	P	3.93861	P	0.871126416033759	0	lncRNA	33214-1_{1..2527}	n337914|BC006113|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|297|NULL|-1.0869700|-0.1367965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n337914|BC006113|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|297|NULL|-1.0869700|-0.1367965	chr1	 47897804	 47900330	-	NA	NA	NA	NA	FOXD2	NA	chr1:47901689-47906363	inter
CUST_33039_PI429285431	0.99192524	A	0.9877745	A	1.0028812164769	0	lncRNA	34653-1_{1..2415}	n339729|BC039344|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2174|NULL|-1.3453600|-0.2904803	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339729|BC039344|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2174|NULL|-1.3453600|-0.2904803	chr3	186499568	186501982	-	NA	NA	NA	NA	RFC4	NA	chr3:186507681-186511968	inner
CUST_38391_PI429285431	0.90507686	A	0.89960563	A	1.00379956777385	0	lncRNA	39429-1_{1..966}	n382304|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ytv.1||5.8540900|-0.2552750	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382304|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ytv.1||5.8540900|-0.2552750	chr15	 21122020	 21122985	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11310_PI429285431	1.1095757	A	0.983225	A	1.09152918105197	0	lncRNA	12873-1_{1..299}	lnc-ARF5-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARF5-5:1	chr7	125924175	125924473	+	lnc-ARF5-5	lnc-ARF5-5:1	XLOC_006235	linc-ARF5-4	NA	NA	NA	inter
CUST_21444_PI429285431	2.7107284	A	2.9072251	A	0.872667092166879	0	lncRNA	23063-1_{1..466}	lnc-DYNC1LI1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DYNC1LI1-1:1	chr3	 32778891	 32779356	-	lnc-DYNC1LI1-1	lnc-DYNC1LI1-1:1	ENSG00000251224.1	CNOT10-AS1	CNOT10	"hg19_refFlat_CNOT10:range=chr3:32737118-328151035'pad=0,hg19_refFlat_CNOT10:range=chr3:32737118-328151035'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CNOT10:range=chr3:32726953-328151035'pad=0,hg19_refFlat_CNOT10:range=chr3:32726953-328151035'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80chr3:32768891-32788946"	NA	inner
CUST_39053_PI429285431	0.93091345	A	0.9178457	A	1.00909902075007	0	lncRNA	40031-1_{1..876}	n385487|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zou.1||2.6924400|-0.2506015	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385487|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zou.1||2.6924400|-0.2506015	chr9	 21277686	 21278561	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8495_PI429285431	0.9214908	A	0.9218623	A	0.999742528973777	0	lncRNA	10059-1_{1..475}	lnc-GPR55-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR55-1:8	chr2	231860563	231861037	-	lnc-GPR55-1	lnc-GPR55-1:8	ENSG00000238062	XLOC_002517	SPATA3	NA	chr2:231860839-231870727	inter
CUST_21411_PI429285431	4.1596546	P	4.1998715	P	0.97250872593512	0	lncRNA	23032-1_{1..3000}	lnc-AGAP5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AGAP5-1:3	chr10	 75490197	 75493196	-	lnc-AGAP5-1	lnc-AGAP5-1:3	ENSG00000242288.4	RP11-464F9.1	NA	NA	NA	inter
CUST_3198_PI429285431	0.89677984	A	1.020122	A	0.91805840310229	0	lncRNA	3177-1_{1..633}	"transcript_id ""ENST00000519983.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519983.1"" | genecode_v17"	chr8	 80209952	 80210584	+	ENSG00000253659.1	ENST00000519983.1	RP11-1114I9.1	RP11-1114I9.1-001	NA	NA	NA	inter
CUST_16205_PI429285431	1.6621225	A	0.9181716	A	1.67475597619492	0	lncRNA	17911-1_{1..932}	lnc-FBXW7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXW7-2:1	chr4	153100642	153101573	-	lnc-FBXW7-2	lnc-FBXW7-2:1	XLOC_004126	linc-PET112L-5	NA	NA	NA	inter
LNCA_21_P0002517	0.94953096	A	0.9187624	A	1.02155618949847	0	lncRNA	THC2705861	NA	NA	NA	NA	XLOC_002383	NA	NA	THC2705861	NA	"BROAD Institute lincRNA (XLOC_002383), lincRNA [TCONS_00004488]"	chr2:169197837-169197778	hs|2q24.3	Agilent_HUMAN_G3V2	THC2705861	THC2705861	chr2	169197778	169197837	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23844_PI429285431	1.7921622	A	1.3610239	A	1.34829697633078	0	lncRNA	25407-1_{1..521}	lnc-GPRC5A-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPRC5A-2:3	chr12	 13132934	 13133454	+	lnc-GPRC5A-2	lnc-GPRC5A-2:3	ENSG00000247498.2	RP11-392P7.8	HEBP1	NA	chr12:13127798-13143309	inner
CUST_31828_PI429285431	0.9131951	A	1.1162682	A	0.868698167916841	0	lncRNA	33563-2_{3001..5596}	n338374|AB007979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|769|NULL|-0.8670110|-0.2640459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338374|AB007979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|769|NULL|-0.8670110|-0.2640459	chr1	175287332	175289927	-	NA	NA	NA	NA	TNR	NA	chr1:175291935-175299747	inter
CUST_22930_PI429285431	1.122047	A	0.91425467	A	1.154919526686	0	lncRNA	24506-1_{1..667}	lnc-SYT1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SYT1-5:1	chr12	 80218770	 80219436	+	lnc-SYT1-5	lnc-SYT1-5:1	ENSG00000258044.1	RP11-530C5.2	PPP1R12A	NA	chr12:80208770-80229276	inner
CUST_14600_PI429285431	7.008702	P	7.261984	P	0.838985626650603	0	lncRNA	16267-1_{1..1169}	lnc-ZNF644-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ZNF644-1:2	chr1	 91317040	 91318208	-	lnc-ZNF644-1	lnc-ZNF644-1:2	XLOC_000915	linc-BARHL2	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70"	NA	inter
CUST_49746_PI429285431	2.1818593	A	1.8126359	A	1.2916573467693	0	lncRNA	53515-2_{3001..3299}	hg19_lincRNAsTranscripts_TCONS_l2_00026541 range=chr7:45763425-45808571 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026541 range=chr7:45763425-45808571 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 45766425	 45766723	-	NA	NA	NA	NA	ADCY1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40chr7:45753425-45762715"	NA	inter
CUST_36955_PI429285431	0.9010376	A	0.9630323	A	0.957938737376668	0	lncRNA	38106-1_{1..3000}	n345422|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_971|NULL|-1.3087300|-0.2114874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n345422|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_971|NULL|-1.3087300|-0.2114874	chr1	201483784	201486783	+	NA	NA	NA	NA	CSRP1	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50chr1:201473784-201476387"	NA	inter
CUST_43185_PI429285431	0.9094934	A	0.9083079	A	1.00082206369184	0	lncRNA	47999-1_{1..375}	ENST00000592319 havana:sense_intronic chromosome:GRCh37:19:37828138:37828645:1 gene:ENSG00000267682 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000592319 havana:sense_intronic chromosome:GRCh37:19:37828138:37828645:1 gene:ENSG00000267682 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 37828138	 37828512	+	ENSG00000267682	ENST00000592319	NA	NA	HKR1	NA	chr19:37825580-37838645	inner
CUST_2250_PI429285431	0.9091026	A	1.086067	A	0.884562262555679	0	lncRNA	2242-1_{1..584}	"transcript_id ""ENST00000505109.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505109.1"" | genecode_v17"	chr5	 89196481	 89197064	+	ENSG00000214942.4	ENST00000505109.1	AC113167.1	AC113167.1-001	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40"	NA	inter
CUST_26904_PI429285431	2.8685434	A	2.5591164	A	1.23921541886497	0	lncRNA	28422-1_{1..386}	n323980|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053812|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053812|0.1806520|-0.1619912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323980|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053812|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053812|0.1806520|-0.1619912	chr9	120489850	120490235	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90"	NA	inter
CUST_22946_PI429285431	0.9016291	A	0.90190303	A	0.99981014421772	0	lncRNA	24522-1_{1..471}	lnc-CHD9-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD9-7:1	chr16	 52113978	 52114448	+	lnc-CHD9-7	lnc-CHD9-7:1	ENSG00000261470.1	RP11-152O14.4	LOC388276	NA	chr16:52103978-52107847	inter
CUST_16022_PI429285431	3.7055023	P	3.4972146	P	1.15531615293234	0	lncRNA	17719-1_{1..625}	lnc-GLI2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLI2-4:1	chr2	121335111	121335735	+	lnc-GLI2-4	lnc-GLI2-4:1	XLOC_001641	linc-GLI2-3	NA	NA	NA	inter
CUST_2807_PI429285431	0.8921714	A	0.92061156	A	0.98047981821054	0	lncRNA	2791-1_{1..587}	"transcript_id ""ENST00000419326.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419326.1"" | genecode_v17"	chr7	 36790292	 36790878	+	ENSG00000229424.1	ENST00000419326.1	AC007349.4	AC007349.4-001	NA	NA	NA	inter
CUST_52057_PI429285431	4.6896176	P	4.982873	P	0.816058566686076	0	lncRNA	55588-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017095 range=chr21:45894994-45899251 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017095 range=chr21:45894994-45899251 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr21	 45894994	 45897993	+	NA	NA	NA	NA	NA	"hg19_refFlat_RAET1G:range=chr6:150238048-1502441465'pad=0,hg19_refFlat_RAET1G:range=chr6:150238048-1502441465'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_VN1R2:range=chr19:53761629-537628165'pad=0,hg19_refFlat_VN1R2:range=chr19:53761629-537628165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_22756_PI429285431	4.7003	P	5.152938	P	0.730705514373068	0	lncRNA	24339-1_{1..1222}	lnc-U47924.19.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-U47924.19.1-1:3	chr12	  7084391	  7085612	+	lnc-U47924.19.1-1	lnc-U47924.19.1-1:3	ENSG00000126749.7	EMG1	PHB2	NA	chr12:7074515-7079916	inner
CUST_43484_PI429285431	9.889025	P	10.126953	P	0.847962282489072	0	lncRNA	48278-3_{6001..6339}	"gi|313851014|ref|NR_037640.1| Homo sapiens HEATR8-TTC4 readthrough (HEATR8-TTC4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|313851014|ref|NR_037640.1| Homo sapiens HEATR8-TTC4 readthrough (HEATR8-TTC4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_037640.1	NA	NA	NA	NA	NA	Unknown
CUST_48460_PI429285431	8.803902	P	8.63047	P	1.12773805100228	0	lncRNA	52312-1_{1..566}	hg19_lincRNAsTranscripts_TCONS_l2_00000837 range=chr1:222988474-223010704 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000837 range=chr1:222988474-223010704 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	222988474	222989039	+	NA	NA	NA	NA	DISP1	NA	chr1:222988431-223020704	inner
CUST_31393_PI429285431	3.7722962	P	1.4174755	A	5.11530654870905	0	lncRNA	33170-1_{1..1594}	n337860|CR598503|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|243|NULL|-0.3066020|-0.3020096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337860|CR598503|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|243|NULL|-0.3066020|-0.3020096	chr1	 36321682	 36323275	+	NA	NA	NA	NA	EIF2C4	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-12.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-24.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr1:36311682-36323491"	NA	inner
CUST_26000_PI429285431	0.90243983	A	0.9779051	A	0.949036006921266	0	lncRNA	27519-1_{1..304}	lnc-SCN4B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SCN4B-1:1	chr11	117957466	117957769	-	lnc-SCN4B-1	lnc-SCN4B-1:1	ENSG00000255274.3	RP11-652L8.2	TMPRSS4	NA	chr11:117947727-117967508	inner
CUST_5198_PI429285431	2.7882123	A	1.5563084	A	2.34876748242261	0	lncRNA	5139-1_{1..643}	"transcript_id ""ENST00000560503.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560503.1"" | genecode_v17"	chr15	 60365867	 60366509	-	ENSG00000259223.1	ENST00000560503.1	RP11-82L7.4	RP11-82L7.4-001	NA	NA	NA	inter
CUST_9446_PI429285431	0.9040547	A	1.0259444	A	0.918983140853491	0	lncRNA	10952-1_{1..483}	lnc-CMAHP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CMAHP-1:2	chr6	 25063465	 25063947	-	lnc-CMAHP-1	lnc-CMAHP-1:2	XLOC_005643	linc-FAM65B-1	NA	NA	NA	inter
CUST_35283_PI429285431	0.9022961	A	0.90256834	A	0.99981131541474	0	lncRNA	36685-2_{3001..3744}	n342300|BC038299|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4792|NULL|0.3847960|-0.3144386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n342300|BC038299|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4792|NULL|0.3847960|-0.3144386	chr1	121141613	121142356	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5893_PI429285431	3.5851498	P	3.5357938	P	1.03480289838985	0	lncRNA	5824-1_{1..2054}	"transcript_id ""ENST00000501718.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000501718.2"" | genecode_v17"	chr17	 49012350	 49014403	-	ENSG00000247011.2	ENST00000501718.2	RP11-700H6.1	RP11-700H6.1-001	NA	NA	NA	inter
CUST_45990_PI429285431	1.120242	A	0.91956633	A	1.14923646095315	0	lncRNA	50279-1_{1..2208}	"gi|253970458|ref|NR_028045.1| Homo sapiens killer cell lectin-like receptor subfamily A pseudogene 1 (KLRAP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|253970458|ref|NR_028045.1| Homo sapiens killer cell lectin-like receptor subfamily A pseudogene 1 (KLRAP1), non-coding RNA"	Chr12	 10741077	 10743284	-	10748	NR_028045.1	NA	NA	NA	NA	NA	inter
CUST_14886_PI429285431	4.3625727	P	4.4083343	P	0.968778263012172	0	lncRNA	16550-1_{1..2615}	lnc-AC012313.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC012313.1-1:1	chr19	 58919494	 58922108	-	lnc-AC012313.1-1	lnc-AC012313.1-1:1	XLOC_013429	linc-ZNF837	ZNF584	NA	chr19:58920063-58929694	inter
CUST_23323_PI429285431	0.97290087	A	2.1145763	A	0.453232923642104	0	lncRNA	24894-1_{1..447}	lnc-SENP6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SENP6-2:1	chr6	 76072482	 76072928	+	lnc-SENP6-2	lnc-SENP6-2:1	ENSG00000237174.1	RP11-415D17.3	FILIP1	"hg19_refFlat_FILIP1:range=chr6:76018407-761246885'pad=0,hg19_refFlat_FILIP1:range=chr6:76018407-761246885'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30chr6:76062482-76082740"	NA	inner
CUST_22867_PI429285431	1.0492675	A	1.1384096	A	0.940081603469745	0	lncRNA	24444-1_{1..637}	lnc-LIN54-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIN54-1:3	chr4	 83821487	 83822123	-	lnc-LIN54-1	lnc-LIN54-1:3	ENSG00000251022.1	RP11-163O17.1	SEC31A	NA	chr4:83811487-83812419	inter
CUST_6509_PI429285431	0.91313934	A	1.0803063	A	0.890589828593641	0	lncRNA	6451-1_{1..1716}	"transcript_id ""ENST00000592640.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000592640.1"" | genecode_v17"	chr19	 38314362	 38316077	-	ENSG00000225868.2	ENST00000592640.1	AC016582.2	AC016582.2-001	NA	"hg19_refFlat_ZNF461:range=chr19:37129555-371556085'pad=0,hg19_refFlat_ZNF461:range=chr19:37129555-371556085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF583:range=chr19:56918484-569357375'pad=0,hg19_refFlat_ZNF583:range=chr19:56918484-569357375'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40"	NA	inter
CUST_34080_PI429285431	1.4193673	A	1.8053737	A	0.765244990168397	0	lncRNA	35609-1_{1..1677}	n340905|AK123552|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3370|NULL|-1.2172200|-0.3296369	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340905|AK123552|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3370|NULL|-1.2172200|-0.3296369	chr6	 28138622	 28140298	+	NA	NA	NA	NA	ZNF389	NA	chr6:28129551-28137376	inter
CUST_20970_PI429285431	3.5875218	A	1.4914856	A	4.27533123980153	0	lncRNA	22600-1_{1..367}	lnc-AC007390.5.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC007390.5.1-1:1	chr2	 37443256	 37443622	+	lnc-AC007390.5.1-1	lnc-AC007390.5.1-1:1	ENSG00000243788.2	AC007390.6	CEBPZ	"hg19_refFlat_CEBPZ:range=chr2:37428907-374587105'pad=0,hg19_refFlat_CEBPZ:range=chr2:37428907-374587105'pad=0 3'pad=0 strand=- repeatMasking=none,-63.50chr2:37433256-37453336"	NA	inner
CUST_27213_PI429285431	6.276091	P	6.246523	P	1.02070644003253	0	lncRNA	28756-1_{1..413}	n324346|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042614|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042614|-1.1746000|-0.3481916	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324346|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042614|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042614|-1.1746000|-0.3481916	chr6	148055226	148055638	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008912	1.8378478	A	0.9074132	A	1.90585003124846	0	lncRNA	TCONS_00024349	NA	NA	NA	NA	XLOC_011671	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011671), lincRNA [TCONS_00024349]"	chr16:23030671-23030730	hs|16p12.2	Agilent_HUMAN_G3V2	TCONS_00024349	TCONS_00024349	chr16	 23030671	 23030730	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7935_PI429285431	0.90931916	A	0.90980554	A	0.999662923897238	0	lncRNA	9547-1_{1..1218}	lnc-TRIB1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIB1-3:1	chr8	126258545	126259762	+	lnc-TRIB1-3	lnc-TRIB1-3:1	ENSG00000244882	ENST00000501085	NSMCE2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-19.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60chr8:126248545-126269405"	NA	inner
CUST_20066_PI429285431	0.93262297	A	0.91637033	A	1.01132916597547	0	lncRNA	21717-1_{1..262}	lnc-IAH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IAH1-1:1	chr2	  9652446	  9652707	+	lnc-IAH1-1	lnc-IAH1-1:1	ENSG00000239300.1	RP11-400L8.2	ADAM17	NA	chr2:9642446-9662541	inner
CUST_46299_PI429285431	9.355204	P	8.516402	P	1.78856431853373	0	lncRNA	50530-1_{1..2145}	"gi|383792156|ref|NR_047546.1| Homo sapiens sec1 family domain containing 1 (SCFD1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|383792156|ref|NR_047546.1| Homo sapiens sec1 family domain containing 1 (SCFD1), transcript variant 4, non-coding RNA"	Chr14	 31091460	 31093604	+	23256	NR_047546.1	NA	NA	NA	NA	NA	inter
CUST_32037_PI429285431	4.4017577	P	4.969204	P	0.674810206660772	0	lncRNA	33753-5_{12001..15000}	n338599|D84239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1005|NULL|36.1234000|-0.1103645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338599|D84239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1005|NULL|36.1234000|-0.1103645	chr19	 40365970	 40368969	-	NA	NA	NA	NA	FCGBP	NA	chr19:40353963-40440533	inner
LNCA_21_P0005308	4.1888576	P	4.5832205	P	0.760825285987462	0	lncRNA	ENST00000457372	NA	NA	NA	NA	XLOC_006445	NA	ENST00000457372	NA	NA	"BROAD Institute lincRNA (XLOC_006445), lincRNA [TCONS_00013172]"	chr7:53582812-53582753	hs|7p12.1	Agilent_HUMAN_G3V2	ENST00000457372	ENST00000457372	chr7	 53582753	 53582812	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37409_PI429285431	10.829395	P	11.220577	P	0.762504628476559	0	lncRNA	38515-1_{1..586}	n345864|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1413|NULL|-1.3227300|-0.2064470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345864|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1413|NULL|-1.3227300|-0.2064470	chr10	 26657664	 26658249	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19380_PI429285431	0.9105291	A	0.9005011	A	1.00697509336158	0	lncRNA	21042-1_{1..970}	lnc-WDR34-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR34-2:2	chr9	131305658	131306627	-	lnc-WDR34-2	lnc-WDR34-2:2	ENSG00000228395.1	RP11-216B9.6	SPTAN1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_GLE1:range=chr9:131267085-1313034495'pad=0,hg19_refFlat_GLE1:range=chr9:131267085-1313034495'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90chr9:131314837-131315965"	NA	inter
CUST_21970_PI429285431	1.2320366	A	1.4055508	A	0.886680221560493	0	lncRNA	23578-1_{1..784}	lnc-FAM43A-11:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM43A-11:1	chr3	194872971	194873754	+	lnc-FAM43A-11	lnc-FAM43A-11:1	ENSG00000230266.1	XXYLT1-AS2	C3orf21	NA	chr3:194862971-194883519	inner
CUST_5237_PI429285431	7.2430325	P	7.2640643	P	0.98552761362112	0	lncRNA	5178-1_{1..439}	"transcript_id ""ENST00000565305.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565305.1"" | genecode_v17"	chr15	 72900828	 72901266	-	ENSG00000259783.1	ENST00000565305.1	RP11-1006G14.2	RP11-1006G14.2-001	LOC646670	NA	chr15:72929419-72939229	inter
CUST_34708_PI429285431	0.9107602	A	0.90913296	A	1.00112855315549	0	lncRNA	36157-1_{1..2149}	n341616|AK026820|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4087|NULL|-1.0679900|-0.1865953	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341616|AK026820|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4087|NULL|-1.0679900|-0.1865953	chr8	134507156	134509304	-	NA	NA	NA	NA	ST3GAL1	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30chr8:134497156-134519435"	NA	inner
CUST_44598_PI429285431	0.9054748	A	1.2943015	A	0.763750487016726	0	lncRNA	49174-2_{3001..3074}	"gi|293651596|ref|NR_033449.1| Homo sapiens transcription factor 7 (T-cell specific, HMG-box) (TCF7), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|293651596|ref|NR_033449.1| Homo sapiens transcription factor 7 (T-cell specific, HMG-box) (TCF7), transcript variant 6, non-coding RNA"	Chr5	133454350	133454423	+	6932	NR_033449.1	NA	NA	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40"	NA	inter
CUST_34291_PI429285431	7.694463	P	8.157195	P	0.725610883375136	0	lncRNA	35788-1_{1..509}	n341150|BC031955|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3616|NULL|-0.9693460|-0.2113193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n341150|BC031955|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3616|NULL|-0.9693460|-0.2113193	chr11	126810641	126811149	+	NA	NA	NA	NA	KIRREL3	NA	chr11:126800641-126824984	inner
CUST_20167_PI429285431	0.9207222	A	1.1029761	A	0.881325039803254	0	lncRNA	21812-1_{1..988}	lnc-TSPO-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSPO-2:1	chr22	 43634604	 43635591	+	lnc-TSPO-2	lnc-TSPO-2:1	ENSG00000234892.1	Z82214.2	SCUBE1	"hg19_refFlat_SCUBE1:range=chr22:43600003-437392675'pad=0,hg19_refFlat_SCUBE1:range=chr22:43600003-437392675'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90chr22:43624604-43645016"	NA	inner
CUST_27944_PI429285431	8.062458	P	9.305773	P	0.422400954537302	0	lncRNA	29548-1_{1..616}	n325191|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330059|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330059|0.1111730|-0.1719798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325191|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330059|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330059|0.1111730|-0.1719798	chr2	107345206	107345821	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28068_PI429285431	0.9221	A	1.077503	A	0.897881525138679	0	lncRNA	29687-1_{1..534}	n325335|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325744|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325744|-0.5942240|-0.1764518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325335|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325744|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325744|-0.5942240|-0.1764518	chr2	 41957717	 41958250	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003157	0.93075645	A	0.91942364	A	1.00788623915524	0	lncRNA	TCONS_00006602	NA	NA	NA	NA	XLOC_003209	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003209), lincRNA [TCONS_00006602]"	chr3:107757397-107757338	hs|3q13.12	Agilent_HUMAN_G3V2	TCONS_00006602	TCONS_00006602	chr3	107757338	107757397	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1065_PI429285431	0.9065921	A	1.1462513	A	0.846945358027559	0	lncRNA	1055-1_{1..3000}	"transcript_id ""ENST00000564121.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564121.1"" | genecode_v17"	chr2	127782787	127785786	+	ENSG00000260163.1	ENST00000564121.1	RP11-521O16.2	RP11-521O16.2-001	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00"	NA	inter
CUST_51803_PI429285431	0.9058836	A	0.90292275	A	1.00205441224856	0	lncRNA	55354-2_{3001..3221}	hg19_lincRNAsTranscripts_TCONS_l2_00012393 range=chr19:21673211-21686025 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012393 range=chr19:21673211-21686025 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 21676211	 21676431	+	NA	NA	NA	NA	ZNF429	NA	chr19:21688437-21696025	inter
CUST_28301_PI429285431	1.0037291	A	0.91455877	A	1.06375825677833	0	lncRNA	29944-1_{1..506}	n325604|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000144425|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000144425|-1.2091200|-0.4203060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325604|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000144425|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000144425|-1.2091200|-0.4203060	chr14	100496915	100497420	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4493_PI429285431	0.92331797	A	1.1522342	A	0.853275642072046	0	lncRNA	4442-1_{1..286}	"transcript_id ""ENST00000543451.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000543451.1"" | genecode_v17"	chr12	127359367	127359652	+	ENSG00000256286.1	ENST00000543451.1	RP11-983C2.3	RP11-983C2.3-001	NA	NA	NA	inter
CUST_31028_PI429285431	1.5386233	A	1.8882563	A	0.784783709722524	0	lncRNA	32817-1_{1..374}	n337240|BC127178|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389187|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389187|-0.5261690|-0.1251407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337240|BC127178|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389187|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389187|-0.5261690|-0.1251407	chr19	 13907377	 13907750	-	NA	NA	NA	NA	ZSWIM4	NA	chr19:13906274-13917751	inner
CUST_3969_PI429285431	1.4546486	A	1.1083088	A	1.27133109245213	0	lncRNA	3939-1_{1..700}	"transcript_id ""ENST00000598393.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598393.1"" | genecode_v17"	chr11	 64552393	 64553092	-	ENSG00000269290.1	ENST00000598393.1	RP11-869B15.1	RP11-869B15.1-001	MAP4K2	NA	chr11:64556609-64563092	inter
CUST_12579_PI429285431	4.0507965	P	3.8920045	P	1.11635200076129	0	lncRNA	14187-1_{1..417}	lnc-SLC25A26-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A26-3:3	chr3	 65178946	 65179362	+	lnc-SLC25A26-3	lnc-SLC25A26-3:3	XLOC_002688	linc-SLC25A26-3	NA	NA	NA	inter
CUST_6756_PI429285431	0.92503333	A	1.3529497	A	0.743334580510297	0	lncRNA	6704-1_{1..323}	"transcript_id ""ENST00000457565.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457565.1"" | genecode_v17"	chr21	 14371997	 14372319	-	ENSG00000229306.1	ENST00000457565.1	AP001464.4	AP001464.4-001	NA	NA	NA	inter
CUST_10367_PI429285431	0.919842	A	0.92371887	A	0.997316365891526	0	lncRNA	11892-1_{1..387}	lnc-CDKAL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDKAL1-2:1	chr6	 21355326	 21355712	+	lnc-CDKAL1-2	lnc-CDKAL1-2:1	XLOC_005195	linc-SOX4	NA	NA	NA	inter
CUST_4738_PI429285431	0.92265105	A	0.9141946	A	1.00587877705855	0	lncRNA	4682-1_{1..449}	"transcript_id ""ENST00000555642.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555642.1"" | genecode_v17"	chr14	 21384925	 21385373	-	ENSG00000258772.1	ENST00000555642.1	RP11-84C10.3	RP11-84C10.3-001	NA	NA	NA	inter
CUST_563_PI429285431	4.767191	P	5.6196632	P	0.553834871840089	0	lncRNA	555-1_{1..359}	"transcript_id ""ENST00000439570.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439570.1"" | genecode_v17"	chr1	212640158	212640516	-	ENSG00000224535.1	ENST00000439570.1	RP11-61J19.2	RP11-61J19.2-001	NA	NA	NA	inter
CUST_47739_PI429285431	1.2827495	A	1.3503013	A	0.954255961833911	0	lncRNA	51689-2_{3001..5971}	"gi|385137085|ref|NR_047623.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 53, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137085|ref|NR_047623.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 53, non-coding RNA"	ChrY	 15363259	 15366229	-	7404	NR_047623.1	NA	NA	NA	NA	NA	inter
CUST_46510_PI429285431	2.3388965	A	2.2853835	A	1.03778889261245	0	lncRNA	50702-1_{1..2249}	"gi|310123334|ref|XR_109175.1| PREDICTED: Homo sapiens golgin-like (LOC441728), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123334|ref|XR_109175.1| PREDICTED: Homo sapiens golgin-like (LOC441728), misc_RNA"	Chr15	 76067900	 76070148	+	441728	XR_109175.1	NA	NA	NA	NA	NA	inter
CUST_39559_PI429285431	0.92665255	A	0.92894566	A	0.998411799795671	0	lncRNA	40503-1_{1..1999}	n387501|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011fvp.1||-0.9586360|-0.2858713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387501|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011fvp.1||-0.9586360|-0.2858713	chr6	  1386907	  1388905	-	NA	NA	NA	NA	FOXF2	NA	chr6:1390069-1395832	inter
CUST_35423_PI429285431	6.5136147	P	6.7429743	P	0.853013453124021	0	lncRNA	36832-1_{1..767}	n342486|AL110259|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4980|NULL|-1.0193100|-0.2513870	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342486|AL110259|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4980|NULL|-1.0193100|-0.2513870	chr16	 65175658	 65176424	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36062_PI429285431	0.91001815	A	1.3033197	A	0.761385209599465	0	lncRNA	37373-1_{1..845}	n344655|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_203|NULL|-1.3246300|-0.2514765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344655|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_203|NULL|-1.3246300|-0.2514765	chr7	 39779299	 39780143	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00"	NA	inter
CUST_15842_PI429285431	2.8661244	A	3.3487506	P	0.715673665904508	0	lncRNA	17534-1_{1..719}	lnc-RALGPS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RALGPS2-1:1	chr1	178676832	178677550	+	lnc-RALGPS2-1	lnc-RALGPS2-1:1	XLOC_000475	linc-RALGPS2-1	NA	NA	NA	inter
CUST_28585_PI429285431	3.2659483	P	3.5273073	P	0.834301647836018	0	lncRNA	30265-1_{1..348}	n325946|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048822|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048822|-0.9706790|-0.4145028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325946|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048822|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048822|-0.9706790|-0.4145028	chr10	 76709489	 76709836	-	NA	NA	NA	NA	KAT6B	NA	chr10:76699489-76723135	inner
CUST_48701_PI429285431	0.92702544	A	0.9239413	A	1.0021400495898	0	lncRNA	52543-1_{1..2899}	hg19_lincRNAsTranscripts_TCONS_l2_00014842 range=chr2:114579400-114600928 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014842 range=chr2:114579400-114600928 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	114579400	114582298	-	NA	NA	NA	NA	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90"	NA	inter
LNCA_21_P0011844	1.0251162	A	1.9695061	A	0.519649259194461	0	lncRNA	TCONS_l2_00013960	NA	NA	NA	NA	XLOC_l2_007541	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007541), lincRNA [TCONS_l2_00013960]"	chr2:127658845-127659450	hs|2q14.3	Agilent_HUMAN_G3V2	TCONS_l2_00013960	TCONS_l2_00013960	chr2	127658845	127659450	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22162_PI429285431	0.96787626	A	0.9595159	A	1.00581178322396	0	lncRNA	23764-1_{1..386}	lnc-M6PR-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-M6PR-2:1	chr12	  8973182	  8973567	-	lnc-M6PR-2	lnc-M6PR-2:1	ENSG00000256904.1	A2ML1-AS2	A2ML1	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40chr12:8975150-8983309"	NA	inter
CUST_22252_PI429285431	2.0041313	A	1.9930377	A	1.00771913767245	0	lncRNA	23853-1_{1..839}	lnc-TIMM9-2:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMM9-2:14	chr14	 58740356	 58741194	-	lnc-TIMM9-2	lnc-TIMM9-2:14	ENSG00000257621.2	RP11-349A22.5	PSMA3	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60chr14:58730356-58738727"	NA	inter
CUST_44789_PI429285431	0.9140467	A	0.9057597	A	1.00576063972213	0	lncRNA	49326-2_{3001..4798}	"gi|168693608|ref|NR_015362.1| Homo sapiens tumor suppressor TSG1 (TSG1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|168693608|ref|NR_015362.1| Homo sapiens tumor suppressor TSG1 (TSG1), non-coding RNA"	Chr6	 94419801	 94421598	+	643432	NR_015362.1	NA	NA	NA	NA	NA	inter
CUST_23449_PI429285431	1.408053	A	1.4444568	A	0.975082504726894	0	lncRNA	25016-1_{1..596}	lnc-KIAA1147-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1147-4:1	chr7	141130957	141131552	-	lnc-KIAA1147-4	lnc-KIAA1147-4:1	ENSG00000261629.1	RP5-842K16.2	LOC100507421	NA	chr7:141120957-141141068	inner
CUST_9501_PI429285431	0.92107874	A	0.9282957	A	0.995010075766609	0	lncRNA	11010-1_{1..357}	lnc-LMAN1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LMAN1-2:1	chr18	 57065515	 57065871	-	lnc-LMAN1-2	lnc-LMAN1-2:1	XLOC_012858	linc-LMAN1-2	NA	NA	NA	inter
CUST_3425_PI429285431	2.1105683	A	2.8744984	P	0.588889926405004	0	lncRNA	3396-2_{3001..4464}	"transcript_id ""ENST00000603805.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603805.1"" | genecode_v17"	chr9	 70940327	 70941790	+	ENSG00000234394.3	ENST00000603805.1	RP11-561O23.5	RP11-561O23.5-003	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
CUST_29579_PI429285431	1.9398161	A	2.2603078	A	0.800796903098785	0	lncRNA	31339-1_{1..472}	n333081|AF284221|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076226|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076226|-1.0643100|-0.1638019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333081|AF284221|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076226|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076226|-1.0643100|-0.1638019	chr9	  1050355	  1050826	+	NA	NA	NA	NA	DMRT2	NA	chr9:1050346-1057554	inner
CUST_45987_PI429285431	12.427827	P	11.855454	P	1.48696738108059	0	lncRNA	50277-1_{1..3000}	"gi|393250347|ref|NR_036693.2| Homo sapiens C-type lectin domain family 2, member D (CLEC2D), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|393250347|ref|NR_036693.2| Homo sapiens C-type lectin domain family 2, member D (CLEC2D), transcript variant 6, non-coding RNA"	Chr12	  9822304	  9825303	+	29121	NR_036693.2	NA	NA	NA	NA	NA	inter
CUST_16978_PI429285431	2.9808772	A	3.940241	P	0.514283652257149	0	lncRNA	18687-3_{6001..9000}	lnc-KIAA0226-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA0226-3:1	chr3	197376878	197379877	-	lnc-KIAA0226-3	lnc-KIAA0226-3:1	XLOC_003405	linc-BDH1-3	NA	NA	NA	inter
CUST_35751_PI429285431	6.8683286	P	7.1297646	P	0.834257120399006	0	lncRNA	37171-1_{1..1490}	n342928|S70154|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5437|NULL|7.9341300|-0.2515406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342928|S70154|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5437|NULL|7.9341300|-0.2515406	chr6	160183084	160184573	+	NA	NA	NA	NA	WTAP	NA	chr6:160173084-160177351	inner
CUST_21994_PI429285431	0.9180918	A	0.9241807	A	0.995788389942218	0	lncRNA	23603-1_{1..708}	lnc-FBXL7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXL7-1:1	chr5	 16141121	 16141828	+	lnc-FBXL7-1	lnc-FBXL7-1:1	ENSG00000250981.1	RP11-19O2.1	11-Mar	NA	chr5:16131121-16151711	inner
CUST_39454_PI429285431	0.9469502	A	0.92533946	A	1.01509217735747	0	lncRNA	40398-1_{1..2312}	n386951|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vdn.1||7.3718900|-0.3015671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386951|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vdn.1||7.3718900|-0.3015671	chr16	 29086162	 29088473	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44596_PI429285431	12.904147	P	12.220836	P	1.60582090496581	0	lncRNA	49173-1_{1..2074}	"gi|307133766|ref|NR_036625.1| Homo sapiens voltage-dependent anion channel 1 (VDAC1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|307133766|ref|NR_036625.1| Homo sapiens voltage-dependent anion channel 1 (VDAC1), transcript variant 2, non-coding RNA"	Chr5	133307566	133309639	-	7416	NR_036625.1	NA	NA	NA	NA	NA	inter
CUST_27637_PI429285431	0.90409243	A	0.9116322	M	0.994787462351301	0	lncRNA	29215-1_{1..1046}	n324843|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171193|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171193|-1.3025300|-0.3057873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324843|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171193|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171193|-1.3025300|-0.3057873	chr21	 25809655	 25810700	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1717_PI429285431	3.3059547	P	3.3789263	P	0.950677815499606	0	lncRNA	1702-1_{1..482}	"transcript_id ""ENST00000506878.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506878.1"" | genecode_v17"	chr4	 27135618	 27136099	-	ENSG00000251080.1	ENST00000506878.1	RP11-415C15.1	RP11-415C15.1-001	NA	NA	NA	inter
CUST_2673_PI429285431	2.7282102	A	2.4233394	A	1.23530800463952	0	lncRNA	2659-1_{1..438}	"transcript_id ""ENST00000436953.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436953.1"" | genecode_v17"	chr6	153625730	153626167	-	ENSG00000237312.1	ENST00000436953.1	RP11-475C16.2	RP11-475C16.2-001	NA	NA	NA	inter
CUST_29539_PI429285431	8.304424	P	7.543662	P	1.69438532573291	0	lncRNA	31298-1_{1..363}	n333007|AF147357|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071430|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071430|0.8269340|-0.2612153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333007|AF147357|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071430|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071430|0.8269340|-0.2612153	chr17	 48821107	 48821469	+	NA	NA	NA	NA	LUC7L3	NA	chr17:48811107-48830072	inner
LNCA_21_P0001507	0.9570586	A	0.9256951	A	1.02197754671858	0	lncRNA	TCONS_00001499	NA	NA	NA	NA	XLOC_000842	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000842), lincRNA [TCONS_00001499]"	chr1:56522474-56522415	hs|1p32.2	Agilent_HUMAN_G3V2	TCONS_00001499	TCONS_00001499	chr1	 56522415	 56522474	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34967_PI429285431	3.879114	P	1.5923158	A	4.87971943234127	0	lncRNA	36384-1_{1..1200}	n341889|CR626416|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4369|NULL|-1.3829800|-0.4329859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341889|CR626416|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4369|NULL|-1.3829800|-0.4329859	chr12	 40148895	 40150094	-	NA	NA	NA	NA	SLC2A13	NA	chr12:40148823-40160095	inner
CUST_28438_PI429285431	0.91083753	A	1.4475754	A	0.689327812299812	0	lncRNA	30097-1_{1..643}	n325762|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044469|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044469|-1.2386300|-0.4142573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325762|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044469|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044469|-1.2386300|-0.4142573	chr13	 35169863	 35170505	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44476_PI429285431	7.7170277	P	7.4728622	P	1.18440747438079	0	lncRNA	49080-1_{1..1760}	"gi|205830458|ref|NR_024158.1| Homo sapiens uncharacterized LOC25845 (PP7080), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|205830458|ref|NR_024158.1| Homo sapiens uncharacterized LOC25845 (PP7080), non-coding RNA"	Chr5	   470625	   472384	-	25845	NR_024158.1	NA	NA	NA	NA	NA	inter
CUST_18916_PI429285431	3.389912	P	3.3421164	P	1.03368427422534	0	lncRNA	20607-1_{1..729}	lnc-CCNJ-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCNJ-1:3	chr10	 97915681	 97916409	+	lnc-CCNJ-1	lnc-CCNJ-1:3	ENSG00000177853	ZNF518A	ZNF518A	NA	chr10:97905681-97923517	inner
CUST_10940_PI429285431	2.7592177	P	1.0164709	A	3.34671755397158	0	lncRNA	12481-1_{1..349}	lnc-RP11-116D17.1.1-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-116D17.1.1-8:1	chr12	115335691	115336039	+	lnc-RP11-116D17.1.1-8	lnc-RP11-116D17.1.1-8:1	XLOC_009891	linc-MAP1LC3B2-8	NA	NA	NA	inter
CUST_3587_PI429285431	1.2173157	A	0.91481644	A	1.23327904098539	0	lncRNA	3557-1_{1..597}	"transcript_id ""ENST00000445932.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445932.1"" | genecode_v17"	chr10	  3266008	  3266604	+	ENSG00000236968.1	ENST00000445932.1	RP11-298E9.5	RP11-298E9.5-001	NA	NA	NA	inter
CUST_14043_PI429285431	0.91482383	A	0.91470027	A	1.00008564893329	0	lncRNA	15690-1_{1..210}	lnc-CDH8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH8-2:1	chr16	 60855036	 60855245	-	lnc-CDH8-2	lnc-CDH8-2:1	XLOC_011973	linc-GOT2-1	NA	NA	NA	inter
CUST_11283_PI429285431	0.92107594	A	0.9173598	A	1.00257915226896	0	lncRNA	12843-1_{1..411}	lnc-C9orf66-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf66-5:1	chr9	   755232	   755642	-	lnc-C9orf66-5	lnc-C9orf66-5:1	XLOC_007629	linc-C9orf66-5	KANK1	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-62.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr9:745232-746103"	NA	inter
CUST_42361_PI429285431	9.55048	P	9.909108	P	0.77990591601303	0	lncRNA	45034-1_{1..163}	ENST00000581572 ncrna:snoRNA chromosome:GRCh37:HSCHR6_MHC_SSTO:30090184:30090346:-1 gene:ENSG00000263942 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581572 ncrna:snoRNA chromosome:GRCh37:HSCHR6_MHC_SSTO:30090184:30090346:-1 gene:ENSG00000263942 gene_biotype:snoRNA transcript_biotype:snoRNA	chrHSCHR6_MHC_SSTO	 30090184	 30090346	-	ENSG00000263942	ENST00000581572	NA	NA	NA	NA	NA	Unknown
CUST_51444_PI429285431	4.675806	P	4.6524186	P	1.01634302008565	0	lncRNA	55021-1_{1..455}	hg19_lincRNAsTranscripts_TCONS_l2_00010089 range=chr16:30305441-30306273 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010089 range=chr16:30305441-30306273 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 30305441	 30305895	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51902_PI429285431	0.9157863	A	0.9147495	A	1.00071891329118	0	lncRNA	55446-1_{1..306}	hg19_lincRNAsTranscripts_TCONS_l2_00012725 range=chr19:56717368-56718434 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012725 range=chr19:56717368-56718434 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 56717368	 56717673	+	NA	NA	NA	NA	ZSCAN5A	NA	chr19:56717154-56728434	inter
CUST_17596_PI429285431	5.545921	P	5.696284	P	0.901023725321165	0	lncRNA	19322-1_{1..811}	lnc-WNT1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WNT1-3:1	chr12	 49457155	 49457965	+	lnc-WNT1-3	lnc-WNT1-3:1	XLOC_009740	linc-TUBA1C-2	MLL2	NA	chr12:49447155-49449107	inter
CUST_19984_PI429285431	5.8704047	P	5.9794097	P	0.927227332904836	0	lncRNA	21637-1_{1..493}	lnc-STK3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STK3-3:1	chr8	100106157	100106649	-	lnc-STK3-3	lnc-STK3-3:1	ENSG00000253562.1	CTD-2340D6.2	VPS13B	NA	chr8:100096157-100116288	inner
CUST_10929_PI429285431	0.9118727	A	1.1081338	A	0.8728096151186	0	lncRNA	12470-1_{1..464}	lnc-RP11-17A1.2.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-17A1.2.1-1:3	chr11	 22881923	 22882386	-	lnc-RP11-17A1.2.1-1	lnc-RP11-17A1.2.1-1:3	XLOC_009393	linc-SVIP	LOC100500938	NA	chr11:22871923-22881972	inner
CUST_38622_PI429285431	6.6395464	P	6.0259523	P	1.5300662275122	0	lncRNA	39626-1_{1..2004}	n383794|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vbc.1||0.4737430|-0.3374189	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383794|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vbc.1||0.4737430|-0.3374189	chr2	206980284	206982287	-	NA	NA	NA	NA	NDUFS1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90chr2:206987803-206992288"	NA	inter
CUST_13927_PI429285431	0.91759443	A	0.92235225	A	0.996707562480088	0	lncRNA	15574-1_{1..908}	lnc-POLR2B-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLR2B-1:7	chr4	 58067299	 58068206	+	lnc-POLR2B-1	lnc-POLR2B-1:7	XLOC_003547	linc-LPHN3-8	NA	NA	NA	inter
CUST_36855_PI429285431	0.96107143	A	1.6357703	A	0.626462965659001	0	lncRNA	38015-2_{3001..3500}	n345323|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_872|NULL|-1.3250500|-0.4053388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345323|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_872|NULL|-1.3250500|-0.4053388	chr16	 72317107	 72317606	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25411_PI429285431	0.9250034	A	0.90500265	A	1.01396000690753	0	lncRNA	26941-1_{1..1190}	lnc-OTOGL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OTOGL-1:1	chr12	 80334142	 80335331	+	lnc-OTOGL-1	lnc-OTOGL-1:1	ENSG00000257557.1	RP11-84G21.1	PPP1R12A	NA	chr12:80324142-80329235	inter
CUST_14184_PI429285431	3.0131211	P	3.0533333	P	0.972511894171185	0	lncRNA	15836-1_{1..256}	lnc-MED10-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MED10-9:2	chr5	  5034246	  5034501	-	lnc-MED10-9	lnc-MED10-9:2	XLOC_004717	linc-IRX2-7	NA	NA	NA	inter
CUST_37089_PI429285431	0.904661	A	0.8975168	A	1.00496426341459	0	lncRNA	38216-1_{1..3000}	n345534|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1083|NULL|-1.4757100|-0.2508002	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n345534|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1083|NULL|-1.4757100|-0.2508002	chr2	 75145821	 75148820	-	NA	NA	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.71;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90"	NA	inter
CUST_21323_PI429285431	0.9297708	A	0.9291479	A	1.00043185460113	0	lncRNA	22946-1_{1..560}	lnc-MMRN1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MMRN1-2:1	chr4	 90612436	 90612995	+	lnc-MMRN1-2	lnc-MMRN1-2:1	ENSG00000251095.1	RP11-115D19.1	NA	NA	NA	inter
CUST_3462_PI429285431	1.0681999	A	0.9259811	A	1.10360110015911	0	lncRNA	3433-1_{1..360}	"transcript_id ""ENST00000418478.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418478.1"" | genecode_v17"	chr9	 88400637	 88400996	-	ENSG00000230303.1	ENST00000418478.1	RP11-213G2.2	RP11-213G2.2-002	NA	"hg19_refFlat_KIF27:range=chr9:86451916-865305065'pad=0,hg19_refFlat_KIF27:range=chr9:86451916-865305065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_45800_PI429285431	8.914956	P	9.045081	P	0.91375227619775	0	lncRNA	50140-1_{1..1031}	"gi|284055258|ref|NR_003034.2| Homo sapiens septin 7 pseudogene (LOC441601), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|284055258|ref|NR_003034.2| Homo sapiens septin 7 pseudogene (LOC441601), non-coding RNA"	Chr11	 50238999	 50240029	-	441601	NR_003034.2	NA	NA	NA	NA	NA	inter
CUST_47295_PI429285431	0.9044072	A	0.9005311	A	1.00269032022039	0	lncRNA	51363-1_{1..3000}	"gi|224028227|ref|NR_026958.1| Homo sapiens long intergenic non-protein coding RNA 494 (LINC00494), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224028227|ref|NR_026958.1| Homo sapiens long intergenic non-protein coding RNA 494 (LINC00494), non-coding RNA"	Chr20	 46988654	 46991653	+	284749	NR_026958.1	NA	NA	NA	NA	NA	inter
CUST_47508_PI429285431	1.1869193	A	0.915867	A	1.2066876632834	0	lncRNA	51520-1_{1..1357}	"gi|81158081|ref|NR_002596.1| Homo sapiens RFPL3 antisense RNA 1 (RFPL3-AS1), transcript variant 1, antisense RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|81158081|ref|NR_002596.1| Homo sapiens RFPL3 antisense RNA 1 (RFPL3-AS1), transcript variant 1, antisense RNA"	NA	NA	NA	NA	NA	NR_002596.1	NA	NA	NA	"hg19_refFlat_RFPL2:range=chr22:32586759-325892615'pad=0,hg19_refFlat_RFPL2:range=chr22:32586759-325892615'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60;hg19_refFlat_RFPL3:range=chr22:32754146-327568195'pad=0,hg19_refFlat_RFPL3:range=chr22:32754146-327568195'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_RFPL3:range=chr22:32754059-327568195'pad=0,hg19_refFlat_RFPL3:range=chr22:32754059-327568195'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_RFPL2:range=chr22:32586759-325984385'pad=0,hg19_refFlat_RFPL2:range=chr22:32586759-325984385'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60;hg19_refFlat_RFPL1:range=chr22:29834781-298381115'pad=0,hg19_refFlat_RFPL1:range=chr22:29834781-298381115'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_RFPL2:range=chr22:32586759-325891745'pad=0,hg19_refFlat_RFPL2:range=chr22:32586759-325891745'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60"	NA	Unknown
CUST_49120_PI429285431	0.89782834	A	0.8930122	A	1.00334387217075	0	lncRNA	52943-1_{1..318}	hg19_lincRNAsTranscripts_TCONS_l2_00020560 range=chr4:69652271-69653039 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020560 range=chr4:69652271-69653039 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 69652271	 69652588	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9759_PI429285431	0.9162086	A	0.9145618	A	1.00114212650723	0	lncRNA	11276-1_{1..828}	lnc-TNFAIP3-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFAIP3-5:2	chr6	137745371	137746198	+	lnc-TNFAIP3-5	lnc-TNFAIP3-5:2	XLOC_005476	linc-TNFAIP3-4	NA	NA	NA	inter
CUST_14622_PI429285431	1.5689474	A	1.5944886	A	0.982451980965855	0	lncRNA	16293-1_{1..1869}	lnc-PPP3CC-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP3CC-1:2	chr8	 22408060	 22409928	+	lnc-PPP3CC-1	lnc-PPP3CC-1:2	XLOC_006738	linc-SORBS3	SORBS3	NA	chr8:22409251-22418678	inter
LNCA_21_P0011565	2.4212918	A	2.8149085	A	0.761218906717793	0	lncRNA	ENST00000477499	XR_108271	XR_108271	NA	Hs.513842	XLOC_l2_005936	NA	ENST00000477499	THC2732647	NA	"PREDICTED: Homo sapiens hypothetical LOC100506371 (LOC100506371), miscRNA [XR_108271]"	chr17:36973-36914	hs|17p13.3	Agilent_HUMAN_G3V2	ENST00000477499	ENST00000477499	chr17	    36914	    36973	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45266_PI429285431	7.5113363	P	7.517428	P	0.995786457305932	0	lncRNA	49717-1_{1..1716}	"gi|389886559|ref|NR_003367.2| Homo sapiens Pvt1 oncogene (non-protein coding) (PVT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|389886559|ref|NR_003367.2| Homo sapiens Pvt1 oncogene (non-protein coding) (PVT1), non-coding RNA"	Chr8	128902874	128904589	+	5820	NR_003367.2	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60"	NA	inter
CUST_40339_PI429285431	4.7800617	P	5.189179	P	0.753084000456178	0	lncRNA	41144-1_{1..1375}	n408908|NR_030775|lncRNA|Homosapiens||RefGeneNoncode|NR_030775||2.2385100|-0.1180596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408908|NR_030775|lncRNA|Homosapiens||RefGeneNoncode|NR_030775||2.2385100|-0.1180596	chr1	201857796	201859170	+	NA	NA	NA	NA	IPO9	NA	chr1:201847796-201853422	inner
CUST_41884_PI429285431	4.715418	P	3.8670592	P	1.8004515783938	0	lncRNA	43570-1_{1..71}	ENST00000582492 ncrna:miRNA chromosome:GRCh37:10:12620752:12620822:1 gene:ENSG00000263584 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582492 ncrna:miRNA chromosome:GRCh37:10:12620752:12620822:1 gene:ENSG00000263584 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 12620752	 12620822	+	ENSG00000263584	ENST00000582492	NA	NA	CAMK1D	NA	chr10:12610752-12630822	inner
CUST_14151_PI429285431	1.0875454	A	0.908771	A	1.13192188511329	0	lncRNA	15802-1_{1..458}	lnc-GNAQ-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNAQ-2:3	chr9	 81753438	 81753895	-	lnc-GNAQ-2	lnc-GNAQ-2:3	XLOC_007745	linc-GNAQ-5	NA	NA	NA	inter
CUST_50490_PI429285431	4.799738	P	5.1493316	P	0.784805142457446	0	lncRNA	54186-1_{1..2482}	hg19_lincRNAsTranscripts_TCONS_l2_00030560 range=chrX:101032844-101035506 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030560 range=chrX:101032844-101035506 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	101032844	101035325	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_52153_PI429285431	5.83898	P	6.0590196	P	0.858541870317605	0	lncRNA	55677-1_{1..423}	hg19_lincRNAsTranscripts_TCONS_l2_00017633 range=chr22:22012460-22015212 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017633 range=chr22:22012460-22015212 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 22012460	 22012882	+	NA	NA	NA	NA	PPIL2	NA	chr22:22020273-22025212	inter
CUST_41960_PI429285431	2.6586611	A	1.9537026	A	1.63009777337728	0	lncRNA	43740-1_{1..102}	ENST00000347538 ncrna:miRNA chromosome:GRCh37:20:61162119:61162220:1 gene:ENSG00000207764 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000347538 ncrna:miRNA chromosome:GRCh37:20:61162119:61162220:1 gene:ENSG00000207764 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 61162119	 61162220	+	ENSG00000207764	ENST00000347538	NA	NA	C20orf166	NA	chr20:61152119-61167971	inner
CUST_45636_PI429285431	2.207516	A	1.9870403	A	1.16511769752947	0	lncRNA	50018-1_{1..3000}	"gi|226061032|ref|NR_027432.1| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|226061032|ref|NR_027432.1| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 5, non-coding RNA"	Chr10	 81805989	 81808988	-	219347	NR_027432.1	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20"	NA	inter
CUST_28736_PI429285431	0.9218623	A	1.6405917	A	0.607632356208574	0	lncRNA	30436-1_{1..2097}	n326129|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046440|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046440|0.0433087|-0.3231492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326129|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046440|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046440|0.0433087|-0.3231492	chr10	  2037666	  2039762	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_36421_PI429285431	0.91410625	A	1.0213317	A	0.928371764285389	0	lncRNA	37637-1_{1..1308}	n344936|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_485|NULL|-1.4026600|-0.1670845	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344936|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_485|NULL|-1.4026600|-0.1670845	chr6	168084230	168085537	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12857_PI429285431	5.2104354	P	5.2766943	P	0.955111520695271	0	lncRNA	14484-1_{1..379}	lnc-TAF12-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TAF12-3:2	chr1	 29198752	 29199130	-	lnc-TAF12-3	lnc-TAF12-3:2	XLOC_000762	linc-TAF12-2	OPRD1	NA	chr1:29188752-29190208	inter
CUST_35993_PI429285431	0.92383724	A	0.9110248	A	1.00892045891358	0	lncRNA	37330-4_{9001..12000}	n344605|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_153|NULL|-1.5217100|-0.2534201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344605|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_153|NULL|-1.5217100|-0.2534201	chr2	239447308	239450307	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00"	NA	inter
CUST_44360_PI429285431	3.1727939	A	2.8288777	A	1.26919716163028	0	lncRNA	48980-1_{1..2496}	"gi|237874232|ref|NR_027697.1| Homo sapiens uncharacterized FLJ39653 (FLJ39653), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|237874232|ref|NR_027697.1| Homo sapiens uncharacterized FLJ39653 (FLJ39653), transcript variant 2, non-coding RNA"	Chr4	 16228286	 16230781	+	202020	NR_027697.1	NA	NA	NA	"hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0,hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.30;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_RPS21:range=chr20:60962395-609635225'pad=0,hg19_refFlat_RPS21:range=chr20:60962395-609635225'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90"	NA	inter
CUST_42912_PI429285431	1.0478956	A	0.8994578	A	1.10836864220243	0	lncRNA	46011-1_{1..72}	ENST00000516763 ncrna:snoRNA chromosome:GRCh37:18:5579413:5579484:1 gene:ENSG00000252572 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516763 ncrna:snoRNA chromosome:GRCh37:18:5579413:5579484:1 gene:ENSG00000252572 gene_biotype:snoRNA transcript_biotype:snoRNA	chr18	  5579413	  5579484	+	ENSG00000252572	ENST00000516763	NA	NA	NA	NA	NA	inter
CUST_18042_PI429285431	2.719315	P	2.8852644	A	0.891341757598669	0	lncRNA	19777-1_{1..811}	lnc-PANK1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PANK1-2:5	chr10	 91452286	 91453096	-	lnc-PANK1-2	lnc-PANK1-2:5	XLOC_008897	linc-PANK1-2	KIF20B	NA	chr10:91461367-91462913	inter
CUST_47682_PI429285431	1.0998001	A	1.0596496	A	1.02822108369756	0	lncRNA	51661-2_{3001..5768}	"gi|385137089|ref|NR_047627.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 57, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137089|ref|NR_047627.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 57, non-coding RNA"	ChrY	 15363259	 15366026	-	7404	NR_047627.1	NA	NA	NA	NA	NA	inter
CUST_44972_PI429285431	9.48009	P	9.689869	P	0.864669676043221	0	lncRNA	49483-1_{1..1784}	"gi|291621681|ref|NR_033323.2| Homo sapiens NOP2/Sun domain family, member 5 pseudogene 2 (NSUN5P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|291621681|ref|NR_033323.2| Homo sapiens NOP2/Sun domain family, member 5 pseudogene 2 (NSUN5P2), non-coding RNA"	NW_003871064.1	   477529	   479312	-	260294	NR_033323.3	NA	NA	NA	"hg19_refFlat_POM121:range=chr7:72396951-724190095'pad=0,hg19_refFlat_POM121:range=chr7:72396951-724190095'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.40"	NA	Unknown
CUST_7114_PI429285431	0.9997765	A	2.7319822	A	0.300991426777742	0	lncRNA	7050-1_{1..481}	"transcript_id ""ENST00000449485.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449485.1"" | genecode_v17"	chrX	127457598	127458078	-	ENSG00000225689.1	ENST00000449485.1	RP1-30E17.2	RP1-30E17.2-001	NA	NA	NA	inter
CUST_39656_PI429285431	7.3671765	P	7.11531	P	1.1907466583478	0	lncRNA	40595-1_{1..2783}	n405263|NR_001284|lncRNA|Homosapiens||RefGeneNoncode|NR_001284||7.0020200|-0.0822726	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405263|NR_001284|lncRNA|Homosapiens||RefGeneNoncode|NR_001284||7.0020200|-0.0822726	chr6	 31976196	 31978978	-	NA	NA	NA	NA	C4B	NA	chr6:31982572-31990800	inter
CUST_50931_PI429285431	1.5030535	A	0.90718675	A	1.51138032796846	0	lncRNA	54572-1_{1..896}	hg19_lincRNAsTranscripts_TCONS_l2_00005598 range=chr12:40959354-40964628 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005598 range=chr12:40959354-40964628 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 40959354	 40960249	+	NA	NA	NA	NA	LOC100506072	NA	chr12:40949354-40964554	inter
CUST_28129_PI429285431	0.9200773	A	0.91249657	A	1.00526839104693	0	lncRNA	29753-1_{1..545}	n325404|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323746|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323746|-1.1081400|-0.3635451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325404|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323746|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323746|-1.1081400|-0.3635451	chr2	 16567938	 16568482	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9622_PI429285431	1.7714996	A	2.010303	A	0.847447911123023	0	lncRNA	11138-1_{1..727}	lnc-CNTN1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CNTN1-1:5	chr12	 40931464	 40932190	+	lnc-CNTN1-1	lnc-CNTN1-1:5	XLOC_009713	linc-CNTN1	LOC100506072	NA	chr12:40936368-40941517	inter
CUST_46903_PI429285431	0.8957313	A	0.89127195	A	1.00309576790227	0	lncRNA	51024-1_{1..3000}	"gi|383276554|ref|NR_002947.2| Homo sapiens testicular cell adhesion molecule 1 homolog (mouse), pseudogene (TCAM1P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|383276554|ref|NR_002947.2| Homo sapiens testicular cell adhesion molecule 1 homolog (mouse), pseudogene (TCAM1P), non-coding RNA"	Chr17	 61934376	 61937375	+	146771	NR_002947.2	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60"	NA	inter
CUST_3596_PI429285431	0.89754075	A	0.8966596	A	1.00061095319407	0	lncRNA	3566-1_{1..2287}	"transcript_id ""ENST00000455199.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455199.1"" | genecode_v17"	chr10	  4093918	  4096204	+	ENSG00000236990.1	ENST00000455199.1	RP11-433J20.1	RP11-433J20.1-001	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90"	NA	inter
CUST_50357_PI429285431	0.90707713	A	0.90544593	A	1.00113130111982	0	lncRNA	54070-1_{1..1240}	hg19_lincRNAsTranscripts_TCONS_l2_00029140 range=chr9:139442073-139444762 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029140 range=chr9:139442073-139444762 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	139442073	139443312	+	NA	NA	NA	NA	NOTCH1	NA	chr9:139432073-139440238	inter
CUST_10936_PI429285431	0.90949917	A	0.8996913	A	1.00682145831693	0	lncRNA	12477-1_{1..280}	lnc-NPY5R-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NPY5R-2:2	chr4	163813492	163813771	+	lnc-NPY5R-2	lnc-NPY5R-2:2	XLOC_003764	linc-NPY5R-2	NA	NA	NA	inter
CUST_48483_PI429285431	0.9029148	A	1.5667008	A	0.631219640128461	0	lncRNA	52335-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00000881 range=chr1:228382416-228391302 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000881 range=chr1:228382416-228391302 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	228385416	228388415	+	NA	NA	NA	NA	OBSCN	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.54;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20chr1:228395861-228401302"	NA	inter
LNCA_21_P0013536	0.9228621	A	0.9095239	A	1.00928820585447	0	lncRNA	TCONS_l2_00028479	NA	NA	NA	NA	XLOC_l2_014182	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014182), lincRNA [TCONS_l2_00028479]"	chr8:39250857-39251795	hs|8p11.22	Agilent_HUMAN_G3V2	TCONS_l2_00028479	TCONS_l2_00028479	chr8	 39250857	 39251795	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008611	0.9231453	A	0.9099078	A	1.00921776007593	0	lncRNA	TCONS_00023350	NA	NA	NA	NA	XLOC_011212	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011212), lincRNA [TCONS_00023350]"	chr15:36793853-36799342	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00023350	TCONS_00023350	chr15	 36793853	 36799342	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33862_PI429285431	2.6582592	A	2.5562053	A	1.07330038482621	0	lncRNA	35406-1_{1..539}	n340649|AJ308027|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3111|NULL|-1.0392000|-0.1189385	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340649|AJ308027|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3111|NULL|-1.0392000|-0.1189385	chr17	 38078107	 38078645	+	NA	NA	NA	NA	ORMDL3	NA	chr17:38077296-38083884	inner
CUST_51146_PI429285431	0.9048325	A	0.907168	A	0.99838246438297	0	lncRNA	54769-3_{6001..6665}	hg19_lincRNAsTranscripts_TCONS_l2_00007752 range=chr14:60395000-60532322 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007752 range=chr14:60395000-60532322 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 60401000	 60401664	+	NA	NA	NA	NA	NA	"hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-27.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-28.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.21;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50"	NA	inter
CUST_34750_PI429285431	1.2921867	A	0.90339625	A	1.30929523545885	0	lncRNA	36193-1_{1..1705}	n341657|AK130883|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4128|NULL|-1.2863700|-0.3872057	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341657|AK130883|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4128|NULL|-1.2863700|-0.3872057	chr9	 16424468	 16426172	-	NA	NA	NA	NA	BNC2	NA	chr9:16414468-16436173	inner
CUST_50935_PI429285431	9.119673	P	8.929855	P	1.14061981442349	0	lncRNA	54576-1_{1..1292}	hg19_lincRNAsTranscripts_TCONS_l2_00005685 range=chr12:53547053-53548406 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005685 range=chr12:53547053-53548406 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 53547053	 53548344	+	NA	NA	NA	NA	CSAD	NA	chr12:53537053-53558406	inter
CUST_28610_PI429285431	1.0721785	A	1.4762682	A	0.755712976014796	0	lncRNA	30294-1_{1..428}	n325975|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047864|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047864|-1.3588200|-0.3242502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325975|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047864|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047864|-1.3588200|-0.3242502	chr10	 47138647	 47139074	+	NA	NA	NA	NA	ANXA8L1	NA	chr10:47157989-47161741	inter
LNCA_21_P0009452	3.6278825	P	3.3651462	P	1.19975206815427	0	lncRNA	TCONS_00026275	NA	NA	NA	NA	XLOC_012622	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012622), lincRNA [TCONS_00026275]"	chr18:8997608-8997667	hs|18p11.22	Agilent_HUMAN_G3V2	TCONS_00026275	TCONS_00026275	chr18	  8997608	  8997667	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12975_PI429285431	0.9755097	A	1.2681742	A	0.816392876958595	0	lncRNA	14601-1_{1..1199}	lnc-TPRA1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPRA1-1:8	chr3	127241036	127242234	-	lnc-TPRA1-1	lnc-TPRA1-1:8	XLOC_003240	linc-TXNRD3-3	NA	NA	NA	inter
LNCA_21_P0010718	0.9287728	A	0.9171057	A	1.00811980572289	0	lncRNA	ENST00000423394	NA	DQ481239	NA	NA	XLOC_l2_000399	NA	ENST00000423394	THC2526511	NA	"BROAD Institute lincRNA (XLOC_l2_000399), lincRNA [TCONS_l2_00002163]"	chr1:143380885-143380944	hs|1q21.1	Agilent_HUMAN_G3V2	ENST00000423394	ENST00000423394	chr1	143380885	143380944	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002499	0.92979777	A	2.4359787	A	0.352041903990208	0	lncRNA	TCONS_00005248	NA	NA	NA	NA	XLOC_002302	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002302), lincRNA [TCONS_00005248]"	chr2:123561369-123561310	hs|2q14.3	Agilent_HUMAN_G3V2	TCONS_00005248	TCONS_00005248	chr2	123561310	123561369	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8497_PI429285431	5.09329	P	5.6390967	P	0.685008264906526	0	lncRNA	10060-2_{3001..3323}	lnc-RP11-630A13.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-630A13.2.1-1:1	chr4	 57494996	 57495318	+	lnc-RP11-630A13.2.1-1	lnc-RP11-630A13.2.1-1:1	ENSG00000250128	XLOC_003546	NA	"hg19_refFlat_LOC100130451:range=chr2:214142441-2141488025'pad=0,hg19_refFlat_LOC100130451:range=chr2:214142441-2141488025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_3205_PI429285431	3.0649128	P	3.4045444	P	0.790243078955491	0	lncRNA	3183-1_{1..431}	"transcript_id ""ENST00000519107.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519107.1"" | genecode_v17"	chr8	 81970758	 81971188	+	ENSG00000254177.1	ENST00000519107.1	RP11-1149M10.1	RP11-1149M10.1-001	PAG1	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90chr8:81960758-81989979"	NA	inner
CUST_41483_PI429285431	0.9089488	A	0.91195506	A	0.997918388920627	0	lncRNA	42683-1_{1..82}	ENST00000581563 ncrna:miRNA chromosome:GRCh37:18:46576057:46576138:-1 gene:ENSG00000263849 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581563 ncrna:miRNA chromosome:GRCh37:18:46576057:46576138:-1 gene:ENSG00000263849 gene_biotype:miRNA transcript_biotype:miRNA	chr18	 46576057	 46576138	-	ENSG00000263849	ENST00000581563	NA	NA	DYM	NA	chr18:46570172-46586138	inner
CUST_10761_PI429285431	11.545223	P	11.69165	P	0.903485279161325	0	lncRNA	12297-1_{1..1277}	lnc-FTCD-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FTCD-2:1	chr21	 47397451	 47398727	-	lnc-FTCD-2	lnc-FTCD-2:1	XLOC_014129	linc-SLC19A1-4	COL6A1	NA	chr21:47401663-47407653	inter
CUST_7396_PI429285431	3.5897145	A	3.3185399	A	1.20678996082546	0	lncRNA	9042-1_{1..3000}	lnc-DIAPH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DIAPH1-1:1	chr5	140813140	140816139	-	lnc-DIAPH1-1	lnc-DIAPH1-1:1	ENSG00000248269	ENST00000513512	PCDHGA1	"hg19_refFlat_PCDHGA12:range=chr5:140810327-1408907405'pad=0,hg19_refFlat_PCDHGA12:range=chr5:140810327-1408907405'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_PCDHGA12:range=chr5:140810327-1408127895'pad=0,hg19_refFlat_PCDHGA12:range=chr5:140810327-1408127895'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70chr5:140803140-140823405"	NA	inner
CUST_27308_PI429285431	1.1126995	A	0.9210105	A	1.14210001921004	0	lncRNA	28867-1_{1..835}	n324461|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041365|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041365|-0.8150160|-0.2384461	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324461|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041365|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041365|-0.8150160|-0.2384461	chr6	 84750165	 84750999	+	NA	NA	NA	NA	MRAP2	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF680:range=chr7:63986777-640233325'pad=0,hg19_refFlat_ZNF680:range=chr7:63986777-640233325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30chr6:84743420-84783761"	NA	inner
CUST_47255_PI429285431	0.9232023	A	0.90763724	A	1.01084728726237	0	lncRNA	51327-1_{1..592}	"gi|404247484|ref|NR_073151.1| Homo sapiens defensin, beta 119 (DEFB119), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|404247484|ref|NR_073151.1| Homo sapiens defensin, beta 119 (DEFB119), transcript variant 5, non-coding RNA"	Chr20	 29964966	 29965557	-	245932	NR_073151.1	NA	NA	NA	NA	NA	inter
CUST_21735_PI429285431	1.2086197	A	1.1047846	A	1.07462633607746	0	lncRNA	23345-1_{1..495}	lnc-RMI1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RMI1-5:3	chr9	 86452323	 86452817	+	lnc-RMI1-5	lnc-RMI1-5:3	ENSG00000226877.1	RP11-575L7.2	KIF27	"hg19_refFlat_KIF27:range=chr9:86451916-865305065'pad=0,hg19_refFlat_KIF27:range=chr9:86451916-865305065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr9:86451613-86462500"	NA	inner
CUST_18587_PI429285431	1.7321104	A	1.5285593	A	1.15152928392275	0	lncRNA	20294-1_{1..678}	lnc-ADAM21-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ADAM21-2:2	chr14	 70838489	 70839166	+	lnc-ADAM21-2	lnc-ADAM21-2:2	ENSG00000258889	RP11-718G2.4	SYNJ2BP-COX16	NA	chr14:70828489-70848831	inner
CUST_1237_PI429285431	2.6326501	A	2.340547	A	1.22442389085897	0	lncRNA	1229-1_{1..508}	"transcript_id ""ENST00000428487.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428487.1"" | genecode_v17"	chr2	216542747	216543254	+	ENSG00000237525.2	ENST00000428487.1	AC012668.2	AC012668.2-003	NA	NA	NA	inter
CUST_28560_PI429285431	0.93006176	A	0.95267665	A	0.984446773127945	0	lncRNA	30237-1_{1..462}	n325914|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049340|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049340|-1.1141100|-0.4119016	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325914|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049340|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049340|-1.1141100|-0.4119016	chr10	 92204434	 92204895	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50158_PI429285431	2.009556	A	1.5679162	A	1.35814715142281	0	lncRNA	53883-1_{1..294}	hg19_lincRNAsTranscripts_TCONS_l2_00028604 range=chr9:3606700-3647592 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028604 range=chr9:3606700-3647592 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	  3606700	  3606993	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012604	0.97910935	A	0.9281926	A	1.03592298441454	0	lncRNA	TCONS_l2_00020666	NA	NA	NA	NA	XLOC_l2_010772	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010772), lincRNA [TCONS_l2_00020666]"	chr4:105541309-105541368	hs|4q24	Agilent_HUMAN_G3V2	TCONS_l2_00020666	TCONS_l2_00020666	chr4	105541309	105541368	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46331_PI429285431	0.9141016	A	0.9141145	A	0.999991058441347	0	lncRNA	50558-2_{3001..6000}	"gi|304766544|ref|NR_015358.2| Homo sapiens long intergenic non-protein coding RNA 643 (LINC00643), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|304766544|ref|NR_015358.2| Homo sapiens long intergenic non-protein coding RNA 643 (LINC00643), non-coding RNA"	Chr14	 62587075	 62590074	+	646113	NR_015358.2	NA	NA	NA	NA	NA	inter
CUST_14949_PI429285431	0.91633964	A	0.904739	A	1.0080733661794	0	lncRNA	16613-1_{1..689}	lnc-AC016251.1-8:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC016251.1-8:17	chr15	 95786880	 95787568	-	lnc-AC016251.1-8	lnc-AC016251.1-8:17	XLOC_011592	linc-RGMA-7	NA	NA	NA	inter
CUST_49968_PI429285431	2.337197	A	2.5669065	A	0.852806594981798	0	lncRNA	53716-1_{1..258}	hg19_lincRNAsTranscripts_TCONS_l2_00026264 range=chr7:149589257-149606765 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026264 range=chr7:149589257-149606765 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	149589257	149589514	+	NA	NA	NA	NA	NA	"hg19_refFlat_ACTR3B:range=chr7:152456968-1525516385'pad=0,hg19_refFlat_ACTR3B:range=chr7:152456968-1525516385'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50"	NA	inter
CUST_10868_PI429285431	0.91445565	A	0.91960657	A	0.996436020430178	0	lncRNA	12407-1_{1..450}	lnc-EPS8L3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPS8L3-1:1	chr1	110428847	110429296	-	lnc-EPS8L3-1	lnc-EPS8L3-1:1	XLOC_000955	linc-EPS8L3	NA	NA	NA	inter
CUST_1262_PI429285431	3.3488705	P	3.3970168	P	0.967178245578122	0	lncRNA	1254-1_{1..2609}	"transcript_id ""ENST00000415174.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000415174.1"" | genecode_v17"	chr2	231555636	231558244	-	ENSG00000226125.1	ENST00000415174.1	AC098823.3	AC098823.3-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60"	NA	inter
CUST_44039_PI429285431	4.632539	P	4.595203	P	1.026217120861	0	lncRNA	48719-2_{3001..3397}	"gi|223555985|ref|NR_026830.1| Homo sapiens SATB2 antisense RNA 1 (SATB2-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223555985|ref|NR_026830.1| Homo sapiens SATB2 antisense RNA 1 (SATB2-AS1), non-coding RNA"	Chr2	200335821	200336217	+	150538	NR_026830.1	NA	NA	NA	NA	NA	inter
CUST_33155_PI429285431	0.9245105	A	0.9150319	A	1.00659169508653	0	lncRNA	34751-1_{1..3000}	n339848|AK128175|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2296|NULL|-1.1605300|-0.3319926	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339848|AK128175|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2296|NULL|-1.1605300|-0.3319926	chr18	 37642866	 37645865	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25343_PI429285431	4.3096423	P	4.8229413	P	0.700618505601707	0	lncRNA	26874-1_{1..355}	lnc-SLC39A11-1:30	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC39A11-1:30	chr17	 70321934	 70322288	-	lnc-SLC39A11-1	lnc-SLC39A11-1:30	ENSG00000227036.2	LINC00511	NA	NA	NA	inter
CUST_50482_PI429285431	0.9214499	A	0.9113883	A	1.0069985458281	0	lncRNA	54180-2_{3001..3999}	hg19_lincRNAsTranscripts_TCONS_l2_00030279 range=chrX:100740363-100789419 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030279 range=chrX:100740363-100789419 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	100743363	100744361	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_44144_PI429285431	1.2070992	A	1.3088446	A	0.93190487296032	0	lncRNA	48807-1_{1..2039}	"gi|338968871|ref|NR_040100.1| Homo sapiens ENTPD3 antisense RNA 1 (ENTPD3-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338968871|ref|NR_040100.1| Homo sapiens ENTPD3 antisense RNA 1 (ENTPD3-AS1), non-coding RNA"	Chr3	 40432442	 40434480	-	285266	NR_040100.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_ENTPD3:range=chr3:40429549-404689995'pad=0,hg19_refFlat_ENTPD3:range=chr3:40429549-404689995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_1872_PI429285431	4.033002	P	4.023507	P	1.00660313769717	0	lncRNA	1862-1_{1..1771}	"transcript_id ""ENST00000563724.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563724.1"" | genecode_v17"	chr4	125421097	125422867	-	ENSG00000261083.1	ENST00000563724.1	RP11-93I21.3	RP11-93I21.3-001	NA	NA	NA	inter
CUST_1567_PI429285431	1.0970957	A	0.91264355	A	1.13638535953813	0	lncRNA	1555-1_{1..723}	"transcript_id ""ENST00000456755.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456755.1"" | genecode_v17"	chr3	177339170	177339892	-	ENSG00000236385.1	ENST00000456755.1	RP11-114M1.2	RP11-114M1.2-001	NA	NA	NA	inter
CUST_34149_PI429285431	0.9296363	A	0.94934183	A	0.98643402603175	0	lncRNA	35667-1_{1..1836}	n340991|AK057087|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3457|NULL|-1.1699200|-0.3692950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340991|AK057087|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3457|NULL|-1.1699200|-0.3692950	chr11	 20155176	 20157011	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4203_PI429285431	5.6629906	P	5.453329	P	1.1564169017787	0	lncRNA	4162-1_{1..772}	"transcript_id ""ENST00000536949.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536949.1"" | genecode_v17"	chr12	 25935640	 25936411	-	ENSG00000256686.1	ENST00000536949.1	RP11-443N24.2	RP11-443N24.2-001	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60"	NA	inter
LNCA_19_P00317903	1.0201378	A	0.9582415	A	1.04383689439444	0	lncRNA	AK056484	NA	AK056484	NA	Hs.587432	LOC441204	uncharacterized LOC441204	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013314), lincRNA [TCONS_l2_00027077]"	chr7:26537415-26537474	hs|7p15.2	Agilent_HUMAN_G3V2	AK056484	AK056484	chr7	 26537415	 26537474	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3545_PI429285431	4.9510746	P	4.747487	P	1.15155841783488	0	lncRNA	3515-1_{1..395}	"transcript_id ""ENST00000435157.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435157.1"" | genecode_v17"	chr9	132021341	132021735	+	ENSG00000241084.1	ENST00000435157.1	RP11-344B5.3	RP11-344B5.3-001	NA	NA	NA	inter
CUST_8885_PI429285431	3.7241547	P	3.8583512	P	0.911177166737736	0	lncRNA	10422-1_{1..507}	lnc-CRYBA4-1:25	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:25	chr22	 27061421	 27061927	+	lnc-CRYBA4-1	lnc-CRYBA4-1:25	ENSG00000225783	XLOC_014192	NA	NA	NA	inter
CUST_12687_PI429285431	6.411137	P	6.3412695	P	1.04962027996893	0	lncRNA	14305-1_{1..253}	lnc-FOXO1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXO1-2:2	chr13	 40918094	 40918346	-	lnc-FOXO1-2	lnc-FOXO1-2:2	XLOC_010577	linc-LHFP	NA	NA	NA	inter
CUST_38683_PI429285431	0.97535247	A	0.9304858	A	1.0315878383191	0	lncRNA	39682-1_{1..3000}	n384064|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zlf.1||0.2411670|-0.2242832	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384064|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zlf.1||0.2411670|-0.2242832	chr22	 16251234	 16254233	-	NA	NA	NA	NA	POTEH	NA	chr22:16256332-16264941	inter
CUST_50394_PI429285431	7.937649	P	8.031264	P	0.937171508653726	0	lncRNA	54099-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030416 range=chrX:281391-284839 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030416 range=chrX:281391-284839 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	   281391	   284390	-	NA	NA	NA	NA	PPP2R3B	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80chrX:294668-294839"	NA	inter
CUST_28281_PI429285431	1.4694396	A	1.6281315	A	0.895836963393188	0	lncRNA	29916-1_{1..645}	n325575|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129994|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129994|-0.7990000|-0.1921729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325575|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129994|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129994|-0.7990000|-0.1921729	chr17	 13868526	 13869170	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29217_PI429285431	4.897235	P	4.7434206	P	1.11250698944923	0	lncRNA	30966-1_{1..3000}	n326740|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097856|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097856|-0.1576960|-0.1560282	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326740|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097856|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097856|-0.1576960|-0.1560282	chr1	   836677	   839676	+	NA	NA	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-57.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30"	NA	inter
CUST_45887_PI429285431	0.9086425	A	0.9062804	A	1.00163862403475	0	lncRNA	50206-5_{12001..12125}	"gi|403048747|ref|NR_073142.1| Homo sapiens progesterone receptor (PGR), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|403048747|ref|NR_073142.1| Homo sapiens progesterone receptor (PGR), transcript variant 5, non-coding RNA"	Chr11	100912355	100912479	-	5241	NR_073142.2	NA	NA	NA	NA	NA	inter
CUST_16809_PI429285431	1.179022	A	0.90395355	A	1.21005149986945	0	lncRNA	18515-1_{1..1131}	lnc-TERF2IP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TERF2IP-1:1	chr16	 75794731	 75795861	+	lnc-TERF2IP-1	lnc-TERF2IP-1:1	XLOC_011790	linc-CNTNAP4	NA	NA	NA	inter
CUST_31338_PI429285431	11.237558	P	11.848341	P	0.654841200723617	0	lncRNA	33120-1_{1..290}	n337806|AF083121|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|188|NULL|1.5741800|-0.4866839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337806|AF083121|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|188|NULL|1.5741800|-0.4866839	chr1	 28390942	 28391231	-	NA	NA	NA	NA	EYA3	NA	chr1:28380942-28401232	inner
CUST_8961_PI429285431	0.924647	A	1.188133	A	0.833072523135807	0	lncRNA	10495-1_{1..979}	lnc-SOX2-1:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SOX2-1:15	chr3	181427597	181428575	+	lnc-SOX2-1	lnc-SOX2-1:15	ENSG00000242808	RP11-4B14.2	SOX2	NA	chr3:181429712-181432224	inter
CUST_41851_PI429285431	12.602125	P	13.644545	P	0.485512383947943	0	lncRNA	43500-1_{1..108}	ENST00000581277 ncrna:miRNA chromosome:GRCh37:10:135185060:135185167:-1 gene:ENSG00000265395 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581277 ncrna:miRNA chromosome:GRCh37:10:135185060:135185167:-1 gene:ENSG00000265395 gene_biotype:miRNA transcript_biotype:miRNA	chr10	135185060	135185167	-	ENSG00000265395	ENST00000581277	NA	NA	PAOX	NA	chr10:135192741-135195167	inner
CUST_44837_PI429285431	8.350239	P	8.428791	P	0.94700765981085	0	lncRNA	49366-1_{1..1718}	"gi|311771699|ref|NR_037166.1| Homo sapiens uncharacterized LOC100129518 (LOC100129518), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|311771699|ref|NR_037166.1| Homo sapiens uncharacterized LOC100129518 (LOC100129518), non-coding RNA"	Chr6	160181290	160183007	-	100129518	NR_037166.1	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_ACAT2:range=chr6:160183120-1601998615'pad=0,hg19_refFlat_ACAT2:range=chr6:160183120-1601998615'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90"	NA	inter
CUST_12168_PI429285431	1.3774402	A	0.89974785	A	1.39251449984136	0	lncRNA	13767-1_{1..280}	lnc-BMP2K-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BMP2K-2:1	chr4	 80320267	 80320546	+	lnc-BMP2K-2	lnc-BMP2K-2:1	XLOC_003586	linc-PRDM8-3	GK2	NA	chr4:80327507-80329372	inter
CUST_24237_PI429285431	2.534159	A	3.071889	A	0.688853929961788	0	lncRNA	25788-1_{1..816}	lnc-GYG2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GYG2-1:1	chrX	  2823609	  2824424	+	lnc-GYG2-1	lnc-GYG2-1:1	ENSG00000229851.1	ARSD-AS1	ARSD	NA	chrX:2822011-2834122	inner
CUST_27470_PI429285431	1.5923158	A	0.91250235	A	1.60193260131778	0	lncRNA	29041-1_{1..568}	n324647|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317512|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317512|-1.1213900|-0.1729141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324647|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317512|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317512|-1.1213900|-0.1729141	chr22	 47223365	 47223932	+	NA	NA	NA	NA	TBC1D22A	NA	chr22:47213365-47235693	inner
CUST_44016_PI429285431	6.8859034	P	4.899822	P	3.96159500325475	0	lncRNA	48703-2_{3001..4275}	"gi|371118828|ref|NR_045770.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371118828|ref|NR_045770.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 9, non-coding RNA"	Chr2	175939978	175941252	-	1386	NR_045770.1	NA	NA	NA	NA	NA	inter
CUST_11317_PI429285431	1.097605	A	0.923611	A	1.12817744548866	0	lncRNA	12880-1_{1..397}	lnc-DENND5A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DENND5A-1:2	chr11	  9142141	  9142537	-	lnc-DENND5A-1	lnc-DENND5A-1:2	XLOC_009370	linc-SCUBE2	NA	NA	NA	inter
CUST_31740_PI429285431	3.3128793	P	3.5210996	P	0.865604377358556	0	lncRNA	33481-1_{1..2524}	n338277|BC028236|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|670|NULL|8.8501800|-0.1121198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338277|BC028236|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|670|NULL|8.8501800|-0.1121198	chr19	  4186417	  4188940	+	NA	NA	NA	NA	ANKRD24	NA	chr19:4183351-4224811	inner
CUST_6591_PI429285431	2.543685	A	1.9406471	A	1.5189115915204	0	lncRNA	6539-1_{1..645}	"transcript_id ""ENST00000589396.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589396.1"" | genecode_v17"	chr19	 56088136	 56088780	-	ENSG00000267730.1	ENST00000589396.1	CTD-2537I9.5	CTD-2537I9.5-001	ZNF579	NA	chr19:56088891-56092211	inter
CUST_44064_PI429285431	8.48044	P	8.946251	P	0.724063935840265	0	lncRNA	48736-2_{3001..4245}	"gi|386869267|ref|NR_048551.1| Homo sapiens solute carrier family 4, anion exchanger, member 3 (SLC4A3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386869267|ref|NR_048551.1| Homo sapiens solute carrier family 4, anion exchanger, member 3 (SLC4A3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_048551.1	NA	NA	NA	NA	NA	Unknown
CUST_41509_PI429285431	0.9009584	A	0.89787054	A	1.00214263361878	0	lncRNA	42735-1_{1..85}	ENST00000362291 ncrna:miRNA chromosome:GRCh37:9:139565054:139565138:1 gene:ENSG00000199161 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362291 ncrna:miRNA chromosome:GRCh37:9:139565054:139565138:1 gene:ENSG00000199161 gene_biotype:miRNA transcript_biotype:miRNA	chr9	139565054	139565138	+	ENSG00000199161	ENST00000362291	NA	NA	AGPAT2	NA	chr9:139567595-139575138	inter
CUST_34031_PI429285431	0.904162	A	0.9015671	A	1.00180026615571	0	lncRNA	35564-1_{1..795}	n340849|BC030116|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3313|NULL|-1.0948700|-0.3541747	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n340849|BC030116|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3313|NULL|-1.0948700|-0.3541747	chr6	 11417585	 11418379	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36861_PI429285431	2.3497639	A	2.8540256	A	0.705021080203258	0	lncRNA	38021-1_{1..1837}	n345330|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_879|NULL|-1.3123600|-0.2565917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345330|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_879|NULL|-1.3123600|-0.2565917	chr16	 30816810	 30818646	-	NA	NA	NA	NA	BCL7C	NA	chr16:30899116-30900450	inter
LNCA_21_P0009133	6.8003464	P	8.21252	P	0.375745153249994	0	lncRNA	TCONS_00025051	NA	NA	NA	NA	XLOC_012007	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012007), lincRNA [TCONS_00025051]"	chr16:74239708-74239649	hs|16q23.1	Agilent_HUMAN_G3V2	TCONS_00025051	TCONS_00025051	chr16	 74239649	 74239708	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44468_PI429285431	0.9045228	A	0.90051633	A	1.0027809330248	0	lncRNA	49072-1_{1..1798}	"gi|299829241|ref|NR_033901.1| Homo sapiens uncharacterized LOC285441 (LOC285441), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299829241|ref|NR_033901.1| Homo sapiens uncharacterized LOC285441 (LOC285441), non-coding RNA"	Chr4	187337280	187339077	-	285441	NR_033901.1	NA	NA	NA	NA	NA	inter
CUST_29180_PI429285431	0.9070485	A	1.1815991	A	0.826707797812162	0	lncRNA	30925-1_{1..882}	n326693|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006253|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006253|-0.5522700|-0.3206624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326693|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006253|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006253|-0.5522700|-0.3206624	chr1	 17054488	 17055369	+	NA	NA	NA	NA	LOC729587	"hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-62.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10chr1:17060447-17060956"	NA	inter
CUST_8927_PI429285431	1.6277021	A	1.9242336	A	0.814207547458142	0	lncRNA	10462-1_{1..1277}	lnc-SLTM-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLTM-2:1	chr15	 59394165	 59395441	-	lnc-SLTM-2	lnc-SLTM-2:1	ENSG00000247934	ENST00000433570	RNF111	"hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-16.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr15:59384165-59389254"	NA	inter
CUST_47905_PI429285431	6.9181137	P	6.851969	P	1.04691528063336	0	lncRNA	51797-2_{3001..4748}	"gi|410171903|ref|XR_171464.1| PREDICTED: Homo sapiens uncharacterized LOC729218 (LOC729218), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171903|ref|XR_171464.1| PREDICTED: Homo sapiens uncharacterized LOC729218 (LOC729218), misc_RNA"	NA	NA	NA	NA	NA	XR_171464.1	NA	NA	NA	NA	NA	Unknown
CUST_38654_PI429285431	0.9078656	A	1.2465569	A	0.790758300642152	0	lncRNA	39657-1_{1..1160}	n383912|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xjm.2||-1.2553800|-0.3298867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383912|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xjm.2||-1.2553800|-0.3298867	chr20	 39666472	 39667631	+	NA	NA	NA	NA	TOP1	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-30.70chr20:39657462-39677632"	NA	inner
CUST_36095_PI429285431	0.9076383	A	0.9083566	A	0.999502236305677	0	lncRNA	37393-4_{9001..12000}	n344678|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_227|NULL|-1.3041500|-0.3744234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n344678|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_227|NULL|-1.3041500|-0.3744234	chr6	 72092204	 72095203	-	NA	NA	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-22.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.50"	NA	inter
CUST_32151_PI429285431	7.1952515	P	7.235916	P	0.972207049298916	0	lncRNA	33851-1_{1..929}	n338718|BC007358|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1138|NULL|-0.3625010|-0.1943536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338718|BC007358|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1138|NULL|-0.3625010|-0.1943536	chr19	 46144948	 46145876	+	NA	NA	NA	NA	EML2	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_EML2:range=chr19:46112921-461487025'pad=0,hg19_refFlat_EML2:range=chr19:46112921-461487025'pad=0 3'pad=0 strand=- repeatMasking=none,-102.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_EML2:range=chr19:46112921-461468465'pad=0,hg19_refFlat_EML2:range=chr19:46112921-461468465'pad=0 3'pad=0 strand=- repeatMasking=none,-102.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50chr19:46134948-46148775"	NA	inner
CUST_22055_PI429285431	0.92826545	A	0.9147841	A	1.00938835645507	0	lncRNA	23663-1_{1..544}	lnc-RHPN1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RHPN1-2:1	chr8	144499080	144499623	+	lnc-RHPN1-2	lnc-RHPN1-2:1	ENSG00000253931.1	RP11-909N17.2	NA	NA	NA	inter
CUST_31600_PI429285431	0.9177859	A	0.90171623	A	1.01120091214586	0	lncRNA	33356-1_{1..1782}	n338109|AK025924|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|497|NULL|-1.1771800|-0.3208471	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338109|AK025924|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|497|NULL|-1.1771800|-0.3208471	chr1	108025755	108027536	+	NA	NA	NA	NA	NTNG1	NA	chr1:108015755-108024475	inter
CUST_36427_PI429285431	3.1335993	P	3.1689656	A	0.975783977952762	0	lncRNA	37641-2_{3001..3283}	n344940|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_489|NULL|-1.2909300|-0.3620517	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344940|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_489|NULL|-1.2909300|-0.3620517	chr7	 93240403	 93240685	-	NA	NA	NA	NA	NA	"hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90"	NA	inter
CUST_9116_PI429285431	1.2361776	A	0.9262617	A	1.23963543492397	0	lncRNA	10635-1_{1..796}	lnc-GADD45A-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-GADD45A-1:4	chr1	 68492257	 68493052	+	lnc-GADD45A-1	lnc-GADD45A-1:4	ENSG00000232284	RP11-518D3.1	NA	NA	NA	inter
CUST_22651_PI429285431	0.9150878	A	1.0420408	A	0.915763519600551	0	lncRNA	24236-1_{1..3000}	lnc-DTWD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-DTWD1-1:1	chr15	 49944336	 49947335	+	lnc-DTWD1-1	lnc-DTWD1-1:1	ENSG00000261597.1	RP11-353B9.1	DTWD1	NA	chr15:49934336-49937333	inter
CUST_1667_PI429285431	0.92080534	A	0.91230816	A	1.00590717531304	0	lncRNA	1652-1_{1..600}	"transcript_id ""ENST00000445908.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445908.1"" | genecode_v17"	chr3	197177198	197177797	-	ENSG00000229912.1	ENST00000445908.1	AC128709.4	AC128709.4-001	NA	NA	NA	inter
CUST_45687_PI429285431	0.91511804	A	0.9109742	A	1.00287641999279	0	lncRNA	50059-2_{3001..4457}	"gi|394025694|ref|NR_073009.1| Homo sapiens fibroblast growth factor receptor 2 (FGFR2), transcript variant 14, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|394025694|ref|NR_073009.1| Homo sapiens fibroblast growth factor receptor 2 (FGFR2), transcript variant 14, non-coding RNA"	Chr10	123240844	123242300	-	2263	NR_073009.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002975	0.9334712	A	3.0004115	A	0.238665129505268	0	lncRNA	THC2663070	NA	NA	NA	NA	XLOC_002701	NA	NA	THC2663070	NA	"BROAD Institute lincRNA (XLOC_002701), lincRNA [TCONS_00006091]"	chr3:071835552-071835611	hs|3p13	Agilent_HUMAN_G3V2	THC2663070	THC2663070	chr3	 71835552	 71835611	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51376_PI429285431	2.282748	A	2.0356882	A	1.18678598915529	0	lncRNA	54970-3_{6001..7159}	hg19_lincRNAsTranscripts_TCONS_l2_00009366 range=chr15:100326887-100347024 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009366 range=chr15:100326887-100347024 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	100332887	100334045	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0,hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0,hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_GOLGA8B:range=chr15:34819833-348281135'pad=0,hg19_refFlat_GOLGA8B:range=chr15:34819833-348281135'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0,hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0,hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-59.20;hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00;hg19_refFlat_GOLGA8A:range=chr15:34673612-346818925'pad=0,hg19_refFlat_GOLGA8A:range=chr15:34673612-346818925'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0,hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_GOLGA2:range=chr9:131019346-1310382555'pad=0,hg19_refFlat_GOLGA2:range=chr9:131019346-1310382555'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90"	NA	inter
CUST_25121_PI429285431	1.1239216	A	2.157609	A	0.48846009147775	0	lncRNA	26659-1_{1..578}	lnc-PODXL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PODXL-1:1	chr7	131012749	131013326	-	lnc-PODXL-1	lnc-PODXL-1:1	ENSG00000236753.1	AC018642.1	MKLN1	NA	chr7:131002749-131022981	inner
CUST_34716_PI429285431	5.827298	P	3.1236904	P	6.51428843605526	0	lncRNA	36163-1_{1..2319}	n341623|BC078139|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4094|NULL|-0.2988950|-0.1891433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341623|BC078139|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4094|NULL|-0.2988950|-0.1891433	chr8	141608075	141610393	+	NA	NA	NA	NA	EIF2C2	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr8:141598075-141619842"	NA	inner
CUST_34693_PI429285431	6.975101	P	4.6526613	P	5.00177340262827	0	lncRNA	36144-2_{3001..4939}	n341598|AK125888|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4069|NULL|-0.9005200|-0.2820388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341598|AK125888|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4069|NULL|-0.9005200|-0.2820388	chr8	124513129	124515067	-	NA	NA	NA	NA	FBXO32	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20chr8:124510127-124525058"	NA	inner
CUST_10430_PI429285431	0.9145023	A	1.22978	A	0.803696274790851	0	lncRNA	11958-1_{1..254}	lnc-DPY30-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DPY30-2:1	chr2	 31997832	 31998085	-	lnc-DPY30-2	lnc-DPY30-2:1	XLOC_002043	linc-SRD5A2-3	NA	NA	NA	inter
CUST_5306_PI429285431	1.0498446	A	0.89709926	A	1.11168290941947	0	lncRNA	5246-1_{1..592}	"transcript_id ""ENST00000555396.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555396.1"" | genecode_v17"	chr15	 92186247	 92186838	-	ENSG00000258765.1	ENST00000555396.1	RP11-692C24.2	RP11-692C24.2-001	NA	NA	NA	inter
CUST_35453_PI429285431	0.9761873	A	0.9056951	A	1.05007487345705	0	lncRNA	36858-2_{3001..6000}	n342528|BX648813|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5024|NULL|0.3531140|-0.2538413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342528|BX648813|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5024|NULL|0.3531140|-0.2538413	chr3	123427798	123430797	+	NA	NA	NA	NA	MYLK	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MYLK:range=chr3:123332952-1235126885'pad=0,hg19_refFlat_MYLK:range=chr3:123332952-1235126885'pad=0 3'pad=0 strand=- repeatMasking=none,-95.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00chr3:123414798-123444293"	NA	inner
CUST_26238_PI429285431	0.90037215	A	0.89377594	A	1.00458261256388	0	lncRNA	27745-1_{1..2367}	lnc-RP11-664D7.4.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RP11-664D7.4.1-3:1	chr8	 70016233	 70018599	-	lnc-RP11-664D7.4.1-3	lnc-RP11-664D7.4.1-3:1	ENSG00000253658.1	RP11-600K15.1	NA	NA	NA	inter
CUST_23510_PI429285431	1.0204873	A	1.0363555	A	0.989061269724694	0	lncRNA	25077-1_{1..645}	lnc-STAT6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STAT6-2:1	chr12	 57541222	 57541866	-	lnc-STAT6-2	lnc-STAT6-2:1	ENSG00000259125.1	RP11-545N8.3	LRP1	"hg19_refFlat_LRP1:range=chr12:57522748-576063385'pad=0,hg19_refFlat_LRP1:range=chr12:57522748-576063385'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70chr12:57531222-57551402"	NA	inner
CUST_34251_PI429285431	3.286744	P	1.6010058	A	3.21704964588406	0	lncRNA	35754-2_{3001..3409}	n341106|AK125524|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3572|NULL|12.6542000|-0.1558765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341106|AK125524|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3572|NULL|12.6542000|-0.1558765	chr11	102983159	102983567	+	NA	NA	NA	NA	DYNC2H1	NA	chr11:102980160-103034200	inner
CUST_43424_PI429285431	1.466023	A	2.0294232	A	0.676705397101278	0	lncRNA	48235-1_{1..3000}	"gi|400154062|ref|NR_073090.1| Homo sapiens MYST/Esa1-associated factor 6 (MEAF6), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|400154062|ref|NR_073090.1| Homo sapiens MYST/Esa1-associated factor 6 (MEAF6), transcript variant 4, non-coding RNA"	Chr1	 37955561	 37958560	-	64769	NR_073090.1	NA	NA	NA	"hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40"	NA	inter
CUST_39577_PI429285431	8.342848	P	8.305488	P	1.02623419267109	0	lncRNA	40520-1_{1..1980}	n387550|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011hog.1||-1.0855100|-0.2145493	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387550|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011hog.1||-1.0855100|-0.2145493	chr6	  2403916	  2405895	+	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20"	NA	inter
LNCA_21_P0003118	0.92242855	A	0.9060829	A	1.0113943680835	0	lncRNA	TCONS_00006511	NA	NA	NA	NA	XLOC_003125	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003125), lincRNA [TCONS_00006511]"	chr3:52217873-52217814	hs|3p21.2	Agilent_HUMAN_G3V2	TCONS_00006511	TCONS_00006511	chr3	 52217814	 52217873	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18171_PI429285431	1.0620164	A	0.9062175	A	1.11403835207554	0	lncRNA	19906-1_{1..3000}	lnc-TTC30B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TTC30B-2:1	chr2	178110372	178113371	-	lnc-TTC30B-2	lnc-TTC30B-2:1	ENSG00000245460	AC079305.1	NFE2L2	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50chr2:178100372-178121509"	NA	inner
CUST_2440_PI429285431	1.0949312	A	0.90436363	A	1.14121259149333	0	lncRNA	2432-1_{1..659}	"transcript_id ""ENST00000505567.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505567.1"" | genecode_v17"	chr5	174045167	174045825	+	ENSG00000250256.1	ENST00000505567.1	RP11-267A15.3	RP11-267A15.3-001	NA	NA	NA	inter
CUST_46328_PI429285431	2.0238714	A	1.1829064	A	1.79124788370986	0	lncRNA	50556-1_{1..1386}	"gi|337756440|ref|NR_039985.1| Homo sapiens uncharacterized LOC400221 (FLJ22447), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|337756440|ref|NR_039985.1| Homo sapiens uncharacterized LOC400221 (FLJ22447), non-coding RNA"	Chr14	 62037258	 62038643	+	400221	NR_039985.1	NA	NA	NA	NA	NA	inter
CUST_10272_PI429285431	1.4394896	A	1.2893467	A	1.10967938117957	0	lncRNA	11797-1_{1..1036}	lnc-ANKRD5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD5-1:1	chr20	  9987161	  9988196	+	lnc-ANKRD5-1	lnc-ANKRD5-1:1	XLOC_013457	linc-ANKRD5-1	NA	NA	NA	inter
LNCA_21_P0002355	7.782755	P	7.5901604	P	1.14281715653559	0	lncRNA	TCONS_00004031	NA	NA	NA	NA	XLOC_001869	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001869), lincRNA [TCONS_00004031]"	chr2:220603646-220607703	hs|2q35	Agilent_HUMAN_G3V2	TCONS_00004031	TCONS_00004031	chr2	220603646	220607703	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6604_PI429285431	6.2026114	P	6.2753763	P	0.950814032216623	0	lncRNA	6552-1_{1..413}	"transcript_id ""ENST00000590613.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590613.1"" | genecode_v17"	chr19	 57047527	 57047939	-	ENSG00000267421.2	ENST00000590613.1	AC005498.3	AC005498.3-001	ZNF471	NA	chr19:57037527-57040270	inter
CUST_24762_PI429285431	0.9063599	A	0.9142209	A	0.994565987962018	0	lncRNA	26306-1_{1..522}	lnc-CMAS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CMAS-1:1	chr12	 22040782	 22041303	+	lnc-CMAS-1	lnc-CMAS-1:1	ENSG00000257022.1	RP11-729I10.2	ABCC9	"hg19_refFlat_ABCC9:range=chr12:21953978-220896085'pad=0,hg19_refFlat_ABCC9:range=chr12:21953978-220896085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ABCC9:range=chr12:21958108-220896085'pad=0,hg19_refFlat_ABCC9:range=chr12:21958108-220896085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80chr12:22030782-22050891"	NA	inner
CUST_20300_PI429285431	0.9159571	A	1.5122004	A	0.661474157753332	0	lncRNA	21944-1_{1..677}	lnc-AC092117.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC092117.1-1:2	chr16	  2802443	  2803119	-	lnc-AC092117.1-1	lnc-AC092117.1-1:2	ENSG00000205913.2	CTD-2270P14.3	SRRM2	NA	chr16:2802330-2812519	inner
CUST_45759_PI429285431	1.6824977	A	1.5156212	A	1.12262531710539	0	lncRNA	50104-2_{3001..5879}	"gi|354548827|ref|NR_045405.1| Homo sapiens resistance to inhibitors of cholinesterase 3 homolog (C. elegans) (RIC3), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|354548827|ref|NR_045405.1| Homo sapiens resistance to inhibitors of cholinesterase 3 homolog (C. elegans) (RIC3), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NR_045405.1	NA	NA	NA	NA	NA	Unknown
CUST_5998_PI429285431	3.4579792	P	3.7452142	P	0.819471113453824	0	lncRNA	5924-1_{1..867}	"transcript_id ""ENST00000591384.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591384.1"" | genecode_v17"	chr17	 76613551	 76614417	-	ENSG00000267123.1	ENST00000591384.1	CTD-2357A8.3	CTD-2357A8.3-001	NA	NA	NA	inter
CUST_7269_PI429285431	0.91418844	A	0.8974113	A	1.01169690729767	0	lncRNA	8095-1_{1..296}	"transcript_id ""ENST00000516825.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516825.1"" | genecode_v17"	chr10	 22074221	 22074516	+	ENSG00000252634.1	ENST00000516825.1	RN7SKP219	RN7SKP219-201	DNAJC1	NA	chr10:22064221-22084516	inner
CUST_34647_PI429285431	0.9524018	A	0.9063419	A	1.03244140106075	0	lncRNA	36099-2_{3001..3174}	n341545|BC004287|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4016|NULL|-1.2351700|-0.3444545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341545|BC004287|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4016|NULL|-1.2351700|-0.3444545	chr8	 81543691	 81543864	-	NA	NA	NA	NA	ZNF704	NA	chr8:81530691-81553847	inner
CUST_22717_PI429285431	0.90490466	A	0.89881617	A	1.00422913734486	0	lncRNA	24301-1_{1..810}	lnc-RARS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RARS-1:1	chr5	168094602	168095411	+	lnc-RARS-1	lnc-RARS-1:1	ENSG00000254192.1	CTC-558O2.2	SLIT3	"hg19_refFlat_SLIT3:range=chr5:168093459-1687277135'pad=0,hg19_refFlat_SLIT3:range=chr5:168093459-1687277135'pad=0 3'pad=0 strand=- repeatMasking=none,-103.90chr5:168093071-168104766"	NA	inner
CUST_22680_PI429285431	5.736	P	5.88191	P	0.903809107538578	0	lncRNA	24263-1_{1..562}	lnc-C17orf48-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf48-2:1	chr17	 10669996	 10670557	+	lnc-C17orf48-2	lnc-C17orf48-2:1	ENSG00000263400.1	CTC-297N7.5	NA	"hg19_refFlat_TMEM220:range=chr17:10618770-106331685'pad=0,hg19_refFlat_TMEM220:range=chr17:10618770-106331685'pad=0 3'pad=0 strand=- repeatMasking=none,-99.20"	NA	inter
CUST_37693_PI429285431	8.157897	P	8.589481	P	0.741447269827661	0	lncRNA	38785-1_{1..444}	n346185|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1735|NULL|-1.3475300|-0.1593232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346185|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1735|NULL|-1.3475300|-0.1593232	chr9	 66553428	 66553871	+	NA	NA	NA	NA	LOC100132004	NA	chr9:66544359-66564644	inter
CUST_38007_PI429285431	1.6421494	A	1.733327	A	0.938756176557458	0	lncRNA	39093-1_{1..3000}	n377581|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029945||1.5980800|-0.1479720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377581|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029945||1.5980800|-0.1479720	chr6	  1380440	  1383439	+	NA	NA	NA	NA	FOXF2	NA	chr6:1390069-1394050	inter
CUST_31829_PI429285431	3.4227126	P	3.9715903	P	0.683551669488775	0	lncRNA	33564-1_{1..709}	n338375|Y13359|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|770|NULL|-0.9450820|-0.2281135	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338375|Y13359|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|770|NULL|-0.9450820|-0.2281135	chr1	175375844	175376552	-	NA	NA	NA	NA	TNR	NA	chr1:175365844-175712752	inner
CUST_1832_PI429285431	0.93091226	A	0.9124951	A	1.01284763322577	0	lncRNA	1821-1_{1..547}	"transcript_id ""ENST00000508358.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508358.1"" | genecode_v17"	chr4	105478117	105478663	+	ENSG00000250670.1	ENST00000508358.1	AC004063.1	AC004063.1-001	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90"	NA	inter
CUST_49370_PI429285431	0.91491383	A	2.1221373	A	0.433101336646224	0	lncRNA	53183-1_{1..279}	hg19_lincRNAsTranscripts_TCONS_l2_00023044 range=chr5:104099016-104109523 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023044 range=chr5:104099016-104109523 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	104099016	104099294	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11010_PI429285431	0.914111	A	0.9139481	A	1.0001129200507	0	lncRNA	12555-1_{1..663}	lnc-ZBED3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZBED3-1:1	chr5	 76393558	 76394220	-	lnc-ZBED3-1	lnc-ZBED3-1:1	XLOC_004894	linc-ZBED3	NA	NA	NA	inter
CUST_33948_PI429285431	7.1229515	P	7.2345653	P	0.925552159120802	0	lncRNA	35488-1_{1..3000}	n340748|AK091489|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3211|NULL|-0.9864430|-0.3518448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340748|AK091489|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3211|NULL|-0.9864430|-0.3518448	chr17	 48830416	 48833415	+	NA	NA	NA	NA	LUC7L3	NA	chr17:48820416-48830072	inter
CUST_49378_PI429285431	0.90117645	A	0.899923	A	1.00086920287153	0	lncRNA	53192-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00023086 range=chr5:126380878-126385981 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023086 range=chr5:126380878-126385981 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	126380878	126383877	-	NA	NA	NA	NA	C5orf63	NA	chr5:126378250-126395981	inner
CUST_11053_PI429285431	1.1910875	A	2.0878193	A	0.53710207491921	0	lncRNA	12602-1_{1..680}	lnc-HDAC4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HDAC4-2:1	chr2	240418233	240418912	-	lnc-HDAC4-2	lnc-HDAC4-2:1	XLOC_002540	linc-HDAC4-2	NA	NA	NA	inter
CUST_29573_PI429285431	6.72849	P	6.746996	P	0.987254538489445	0	lncRNA	31333-1_{1..230}	n333071|AF270490|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075767|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075767|-1.1221300|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333071|AF270490|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075767|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075767|-1.1221300|-1.0000000	chr22	 46546922	 46547151	+	NA	NA	NA	NA	PPARA	NA	chr22:46546499-46557863	inner
CUST_9684_PI429285431	0.9159102	A	0.9074761	A	1.0058631942667	0	lncRNA	11201-1_{1..1853}	lnc-GIMAP8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GIMAP8-1:1	chr7	150144164	150146016	+	lnc-GIMAP8-1	lnc-GIMAP8-1:1	XLOC_006293	linc-GIMAP8-1	GIMAP8	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr7:150147962-150155228"	NA	inter
LNCA_21_P0005655	0.92681766	A	1.8916705	A	0.512330668392523	0	lncRNA	THC2655346	NA	NA	NA	NA	XLOC_006712	NA	NA	THC2655346	NA	"BROAD Institute lincRNA (XLOC_006712), lincRNA [TCONS_00014617]"	chr8:011506764-011506823	hs|8p23.1	Agilent_HUMAN_G3V2	THC2655346	THC2655346	chr8	 11506764	 11506823	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37299_PI429285431	0.9213849	A	0.9192257	A	1.00149776392193	0	lncRNA	38407-1_{1..2592}	n345742|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1291|NULL|-1.4162700|-0.2457100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345742|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1291|NULL|-1.4162700|-0.2457100	chr19	 20577287	 20579878	-	NA	NA	NA	NA	ZNF737	NA	chr19:20599320-20617787	inter
CUST_43586_PI429285431	0.91292447	A	0.90409243	A	1.00614068077433	0	lncRNA	48352-7_{18001..21000}	"gi|387942412|ref|NR_049745.1| Homo sapiens HYDIN2, axonemal central pair apparatus protein (pseudogene) (HYDIN2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387942412|ref|NR_049745.1| Homo sapiens HYDIN2, axonemal central pair apparatus protein (pseudogene) (HYDIN2), non-coding RNA"	NA	NA	NA	NA	NA	NR_049745.1	NA	NA	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-59.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20"	NA	Unknown
LNCA_21_P0006136	4.077486	P	4.008369	P	1.049074402192	0	lncRNA	TCONS_00015943	NA	NA	NA	NA	XLOC_007314	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007314), lincRNA [TCONS_00015943]"	chr9:32743383-32745637	hs|9p21.1	Agilent_HUMAN_G3V2	TCONS_00015943	TCONS_00015943	chr9	 32743383	 32745637	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24705_PI429285431	1.9046183	A	1.8158228	A	1.06348191513767	0	lncRNA	26251-1_{1..2631}	lnc-GLUL-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-GLUL-1:2	chr1	182213490	182216120	-	lnc-GLUL-1	lnc-GLUL-1:2	ENSG00000228918.1	GS1-122H1.2	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10"	NA	inter
CUST_42951_PI429285431	3.783395	P	4.1235733	P	0.789943678158617	0	lncRNA	46073-1_{1..134}	ENST00000364941 ncrna:snoRNA chromosome:GRCh37:20:37070679:37070812:1 gene:ENSG00000201811 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364941 ncrna:snoRNA chromosome:GRCh37:20:37070679:37070812:1 gene:ENSG00000201811 gene_biotype:snoRNA transcript_biotype:snoRNA	chr20	 37070679	 37070812	+	ENSG00000201811	ENST00000364941	NA	NA	NA	NA	NA	inter
CUST_19166_PI429285431	6.9822025	P	7.426817	P	0.734780629847229	0	lncRNA	20835-1_{1..2161}	lnc-RP11-389E17.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-389E17.1.1-1:1	chr4	178596991	178599151	+	lnc-RP11-389E17.1.1-1	lnc-RP11-389E17.1.1-1:1	ENSG00000250131.1	RP11-130F10.1	NA	NA	NA	inter
CUST_18130_PI429285431	0.92176294	A	0.92078334	A	1.0006792375555	0	lncRNA	19865-1_{1..601}	lnc-SIK1-4:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIK1-4:11	chr21	 44895852	 44896452	-	lnc-SIK1-4	lnc-SIK1-4:11	XLOC_014105	linc-SIK1-2	NA	NA	NA	inter
CUST_28158_PI429285431	0.9265834	A	0.95996284	A	0.977128740165105	0	lncRNA	29784-1_{1..1170}	n325435|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324061|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324061|-0.2725620|-0.3373192	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325435|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324061|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324061|-0.2725620|-0.3373192	chr2	 11739037	 11740206	+	NA	NA	NA	NA	GREB1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90chr2:11729037-11750905"	NA	inner
CUST_51253_PI429285431	0.9164229	A	0.90388227	A	1.00873039183059	0	lncRNA	54862-2_{3001..3268}	hg19_lincRNAsTranscripts_TCONS_l2_00008479 range=chr15:28900749-28928519 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008479 range=chr15:28900749-28928519 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28903749	 28904016	+	NA	NA	NA	NA	NA	"hg19_refFlat_HERC2:range=chr15:28356909-285665795'pad=0,hg19_refFlat_HERC2:range=chr15:28356909-285665795'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30"	NA	inter
CUST_31388_PI429285431	1.9350919	A	1.6754915	A	1.1971470709657	0	lncRNA	33165-2_{3001..5204}	n337853|CR627122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|236|NULL|-1.1633500|-0.4378281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337853|CR627122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|236|NULL|-1.1633500|-0.4378281	chrX	131509031	131511234	-	NA	NA	NA	NA	MBNL3	NA	chrX:131503342-131521219	inner
CUST_39720_PI429285431	8.677997	P	9.221928	P	0.68589944813037	0	lncRNA	40653-1_{1..3000}	n405658|NR_002824|lncRNA|Homosapiens||RefGeneNoncode|NR_002824||16.0397000|-0.2276221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405658|NR_002824|lncRNA|Homosapiens||RefGeneNoncode|NR_002824||16.0397000|-0.2276221	chr15	 23282264	 23285263	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42233_PI429285431	3.801549	P	3.5630817	P	1.17973865678941	0	lncRNA	44349-1_{1..99}	ENST00000581891 ncrna:miRNA chromosome:GRCh37:5:172089168:172089266:1 gene:ENSG00000265160 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581891 ncrna:miRNA chromosome:GRCh37:5:172089168:172089266:1 gene:ENSG00000265160 gene_biotype:miRNA transcript_biotype:miRNA	chr5	172089168	172089266	+	ENSG00000265160	ENST00000581891	NA	NA	NEURL1B	NA	chr5:172079168-172099266	inner
CUST_10782_PI429285431	1.3450396	A	0.901787	A	1.35966628364665	0	lncRNA	12317-1_{1..715}	lnc-AC110619.2.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC110619.2.1-1:2	chr2	241322289	241323003	-	lnc-AC110619.2.1-1	lnc-AC110619.2.1-1:2	XLOC_002543	linc-OTOS-1	NA	NA	NA	inter
CUST_45171_PI429285431	7.0235243	P	6.9795685	P	1.03093673339361	0	lncRNA	49646-1_{1..1045}	"gi|356460959|ref|NR_045492.1| Homo sapiens LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) (LSM1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|356460959|ref|NR_045492.1| Homo sapiens LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) (LSM1), transcript variant 2, non-coding RNA"	Chr8	 38020839	 38021883	-	27257	NR_045492.1	NA	NA	NA	NA	NA	inter
CUST_34314_PI429285431	1.4571791	A	0.9058464	A	1.46543878058291	0	lncRNA	35808-1_{1..3000}	n341175|AK123586|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3641|NULL|-1.0580500|-0.2177169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341175|AK123586|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3641|NULL|-1.0580500|-0.2177169	chr7	  4029592	  4032591	+	NA	NA	NA	NA	SDK1	NA	chr7:4019592-4042608	inner
CUST_25695_PI429285431	0.918849	A	0.9079002	A	1.00761800028407	0	lncRNA	27223-2_{3001..3910}	lnc-PGPEP1L-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PGPEP1L-3:1	chr15	 99700436	 99701345	-	lnc-PGPEP1L-3	lnc-PGPEP1L-3:1	ENSG00000259921.1	AC022819.3	TTC23	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.81;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.31;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70chr15:99687436-99711345"	NA	inner
CUST_9993_PI429285431	0.9145618	A	0.9142982	A	1.00018273028994	0	lncRNA	11519-1_{1..863}	lnc-PPP2R2B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP2R2B-2:1	chr5	146614276	146615138	-	lnc-PPP2R2B-2	lnc-PPP2R2B-2:1	XLOC_005047	linc-PPP2R2B-1	STK32A	NA	chr5:146614579-146624422	inter
CUST_44697_PI429285431	10.835932	P	10.540161	P	1.22754082003105	0	lncRNA	49254-1_{1..698}	"gi|224028268|ref|NR_026973.1| Homo sapiens HLA-F antisense RNA 1 (HLA-F-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224028268|ref|NR_026973.1| Homo sapiens HLA-F antisense RNA 1 (HLA-F-AS1), transcript variant 2, non-coding RNA"	Chr6	 29694378	 29695075	-	285830	NR_026973.1	NA	NA	NA	"hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90"	NA	inter
CUST_51012_PI429285431	2.2470028	A	0.94139075	A	2.47188572644974	0	lncRNA	54658-1_{1..1627}	hg19_lincRNAsTranscripts_TCONS_l2_00007210 range=chr13:52793486-52866465 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007210 range=chr13:52793486-52866465 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 52793486	 52795112	-	NA	NA	NA	NA	LOC100652836	NA	chr13:52863953-52876465	inter
CUST_23178_PI429285431	5.8467035	P	5.9165144	P	0.952762872426215	0	lncRNA	24750-1_{1..328}	lnc-PIK3CA-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PIK3CA-1:3	chr3	178174882	178175209	+	lnc-PIK3CA-1	lnc-PIK3CA-1:3	ENSG00000223941.1	KCNMB2-IT1	NA	NA	NA	inter
CUST_40006_PI429285431	3.0346315	P	1.2520257	A	3.44047032464367	0	lncRNA	40869-2_{3001..3350}	n407155|NR_026569|lncRNA|Homosapiens||RefGeneNoncode|NR_026569||4.0043800|-0.3618965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407155|NR_026569|lncRNA|Homosapiens||RefGeneNoncode|NR_026569||4.0043800|-0.3618965	chr18	  5292017	  5292366	-	NA	NA	NA	NA	ZFP161	NA	chr18:5289018-5296039	inner
CUST_4788_PI429285431	0.90519	A	0.93323576	A	0.980747895726452	0	lncRNA	4732-1_{1..318}	"transcript_id ""ENST00000555362.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555362.1"" | genecode_v17"	chr14	 42728934	 42729251	-	ENSG00000259149.1	ENST00000555362.1	RP11-313C4.1	RP11-313C4.1-001	NA	NA	NA	inter
CUST_6594_PI429285431	2.492889	A	3.3568728	P	0.549433278331471	0	lncRNA	6542-1_{1..1438}	"transcript_id ""ENST00000588685.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588685.1"" | genecode_v17"	chr19	 56988619	 56990056	+	ENSG00000166770.6	ENST00000588685.1	AC004696.2	AC004696.2-006	ZNF667	NA	chr19:56978619-56988770	inter
CUST_43012_PI429285431	7.1333985	P	7.491529	P	0.780174905709092	0	lncRNA	46232-1_{1..126}	ENST00000408749 ncrna:snRNA chromosome:GRCh37:9:137029561:137029686:-1 gene:ENSG00000221676 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408749 ncrna:snRNA chromosome:GRCh37:9:137029561:137029686:-1 gene:ENSG00000221676 gene_biotype:snRNA transcript_biotype:snRNA	chr9	137029561	137029686	-	ENSG00000221676	ENST00000408749	NA	NA	WDR5	NA	chr9:137019561-137025094	inter
CUST_6824_PI429285431	1.2799987	A	1.0943594	A	1.13732084142711	0	lncRNA	6772-1_{1..291}	"transcript_id ""ENST00000426609.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426609.1"" | genecode_v17"	chr21	 26499782	 26500072	+	ENSG00000223870.1	ENST00000426609.1	AP000233.3	AP000233.3-001	NA	NA	NA	inter
CUST_11661_PI429285431	0.9448619	A	0.914267	A	1.02143323019933	0	lncRNA	13238-1_{1..544}	lnc-C15orf2-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-2:8	chr15	 24758770	 24759313	+	lnc-C15orf2-2	lnc-C15orf2-2:8	XLOC_011181	linc-C15orf2-1	NA	NA	NA	inter
CUST_31493_PI429285431	0.9136797	A	0.90623796	A	1.00517154762579	0	lncRNA	33257-1_{1..2347}	n337974|AK097193|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|360|NULL|1.1181000|-0.2669751	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337974|AK097193|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|360|NULL|1.1181000|-0.2669751	chr1	 61125302	 61127648	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00"	NA	inter
CUST_7427_PI429285431	6.1953974	P	9.3410425	P	0.112996884425324	0	lncRNA	9069-1_{1..1778}	lnc-ANP32A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ANP32A-3:1	chr15	 69706491	 69708268	-	lnc-ANP32A-3	lnc-ANP32A-3:1	ENSG00000245371	ENSG00000259426.1	PAQR5	"hg19_refFlat_PAQR5:range=chr15:69652420-696961615'pad=0,hg19_refFlat_PAQR5:range=chr15:69652420-696961615'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90chr15:69696491-69699976"	NA	inner
CUST_37885_PI429285431	0.96928215	A	0.91587794	A	1.03771063851595	0	lncRNA	38976-1_{1..577}	n346421|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1971|NULL|-1.2628100|-0.3784802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n346421|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1971|NULL|-1.2628100|-0.3784802	chr1	 24348288	 24348864	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2003_PI429285431	0.9169024	A	0.92048836	A	0.997517488477436	0	lncRNA	1994-1_{1..802}	"transcript_id ""ENST00000522554.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522554.1"" | genecode_v17"	chr4	185505247	185506048	-	ENSG00000254233.1	ENST00000522554.1	RP11-242J7.1	RP11-242J7.1-001	CASP3	NA	chr4:185548850-185556184	inter
CUST_29295_PI429285431	7.2465343	P	6.0350084	P	2.3158244585998	0	lncRNA	31046-1_{1..468}	n332455|EU039832|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000484287|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000484287|0.9216680|-0.2248007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332455|EU039832|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000484287|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000484287|0.9216680|-0.2248007	chr11	 17298286	 17298753	+	NA	NA	NA	NA	NUCB2	NA	chr11:17298286-17327713	inner
CUST_35404_PI429285431	0.9130516	A	0.9120088	A	1.00072307517279	0	lncRNA	36815-1_{1..1708}	n342464|BC033401|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4958|NULL|-0.6386500|-0.1445254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342464|BC033401|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4958|NULL|-0.6386500|-0.1445254	chr2	231174306	231176013	-	NA	NA	NA	NA	SP140	"hg19_refFlat_SP140L:range=chr2:231191985-2312676115'pad=0,hg19_refFlat_SP140L:range=chr2:231191985-2312676115'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_SP140:range=chr2:231090560-2311773995'pad=0,hg19_refFlat_SP140:range=chr2:231090560-2311773995'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.80chr2:231164306-231177930"	NA	inner
CUST_5025_PI429285431	6.4753	P	6.30121	P	1.12825251931591	0	lncRNA	4965-1_{1..485}	"transcript_id ""ENST00000554369.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554369.1"" | genecode_v17"	chr14	101417781	101418265	+	ENSG00000225746.4	ENST00000554369.1	AL132709.5	AL132709.5-003	NA	"hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.04;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-25.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90"	NA	inter
CUST_47504_PI429285431	5.9822507	P	5.6451545	P	1.26321149093824	0	lncRNA	51517-1_{1..3000}	"gi|209529685|ref|NR_024210.1| Homo sapiens ring finger protein 185 (RNF185), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209529685|ref|NR_024210.1| Homo sapiens ring finger protein 185 (RNF185), transcript variant 5, non-coding RNA"	Chr22	 31556138	 31559137	+	91445	NR_024210.1	NA	NA	NA	NA	NA	inter
CUST_48467_PI429285431	6.2251053	P	6.1860867	P	1.027414685276	0	lncRNA	52319-1_{1..1117}	hg19_lincRNAsTranscripts_TCONS_l2_00001802 range=chr1:224139118-224140327 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001802 range=chr1:224139118-224140327 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	224139118	224140234	-	NA	NA	NA	NA	LOC441124	NA	chr1:224133977-224141141	inter
CUST_5850_PI429285431	1.7874507	A	1.0235627	A	1.69806066310897	0	lncRNA	5779-1_{1..2141}	"transcript_id ""ENST00000456403.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000456403.1"" | genecode_v17"	chr17	 39705858	 39707998	-	ENSG00000226629.1	ENST00000456403.1	AC019349.2	AC019349.2-001	NA	NA	NA	inter
CUST_35740_PI429285431	0.9192157	A	0.925493	A	0.9956583594935	0	lncRNA	37158-1_{1..3000}	n342911|BX648825|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5419|NULL|-0.9353100|-0.2013609	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342911|BX648825|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5419|NULL|-0.9353100|-0.2013609	chr12	131963388	131966387	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40712_PI429285431	0.9163899	A	1.1755159	A	0.835593977844103	0	lncRNA	41451-1_{1..3000}	n410282|NR_037177_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_3||0.0246734|-0.2632021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410282|NR_037177_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_3||0.0246734|-0.2632021	chr6	  4143278	  4146277	+	NA	NA	NA	NA	ECI2	NA	chr6:4133278-4135831	inter
CUST_42734_PI429285431	8.070851	P	8.476416	P	0.754940578892681	0	lncRNA	45681-1_{1..95}	ENST00000391250 ncrna:snoRNA chromosome:GRCh37:17:2232413:2232507:-1 gene:ENSG00000212552 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391250 ncrna:snoRNA chromosome:GRCh37:17:2232413:2232507:-1 gene:ENSG00000212552 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	  2232413	  2232507	-	ENSG00000212552	ENST00000391250	NA	NA	TSR1	NA	chr17:2225972-2240678	inner
CUST_16617_PI429285431	0.89886916	A	0.8986307	A	1.00016530153747	0	lncRNA	18317-1_{1..2655}	lnc-CCDC59-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC59-5:1	chr12	 83866039	 83868693	-	lnc-CCDC59-5	lnc-CCDC59-5:1	XLOC_010142	linc-CCDC59-1	NA	NA	NA	inter
CUST_44913_PI429285431	0.91895354	A	0.91798824	A	1.00066931886737	0	lncRNA	49429-1_{1..1598}	"gi|336285246|ref|NR_038454.1| Homo sapiens phosphoribosyl pyrophosphate synthetase 2 pseudogene (LOC100130673), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336285246|ref|NR_038454.1| Homo sapiens phosphoribosyl pyrophosphate synthetase 2 pseudogene (LOC100130673), non-coding RNA"	Chr7	 32496509	 32498106	-	100130673	NR_038454.1	NA	NA	NA	NA	NA	inter
CUST_21377_PI429285431	1.2152232	A	0.9169913	A	1.22963650416371	0	lncRNA	22999-1_{1..2486}	lnc-RP11-305N23.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RP11-305N23.1.1-1:2	chr11	119369261	119371746	+	lnc-RP11-305N23.1.1-1	lnc-RP11-305N23.1.1-1:2	ENSG00000245248.3	RP11-305N23.1	NA	NA	NA	inter
CUST_28692_PI429285431	0.91777223	A	0.90685683	A	1.00759467307306	0	lncRNA	30391-1_{1..3000}	n326080|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046670|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046670|-0.0742789|-0.3280015	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326080|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046670|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046670|-0.0742789|-0.3280015	chr10	  6861565	  6864564	+	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20"	NA	inter
CUST_15070_PI429285431	0.92191863	A	1.1829344	A	0.834500159241862	0	lncRNA	16734-1_{1..840}	lnc-CMPK2-13:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMPK2-13:3	chr2	  5831319	  5832158	-	lnc-CMPK2-13	lnc-CMPK2-13:3	XLOC_001958	linc-RNASEH1-2	SOX11	NA	chr2:5832799-5841468	inter
CUST_34707_PI429285431	0.9209727	A	0.9161227	A	1.00336742089119	0	lncRNA	36156-1_{1..365}	n341614|AF075077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4085|NULL|-1.2495100|-0.2853169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341614|AF075077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4085|NULL|-1.2495100|-0.2853169	chr8	134521000	134521364	+	NA	NA	NA	NA	ST3GAL1	NA	chr8:134511000-134531364	inner
CUST_30495_PI429285431	10.681557	P	10.884238	P	0.868934297405801	0	lncRNA	32275-1_{1..429}	n335649|CR609392|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000288587|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000288587|-1.0266800|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335649|CR609392|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000288587|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000288587|-1.0266800|-1.0000000	chr12	 49952085	 49952513	-	NA	NA	NA	NA	KCNH3	NA	chr12:49942085-49952077	inner
CUST_12374_PI429285431	0.92217916	A	0.9054768	A	1.01164446881837	0	lncRNA	13986-1_{1..340}	lnc-OR5AC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR5AC2-1:1	chr3	 97801367	 97801706	+	lnc-OR5AC2-1	lnc-OR5AC2-1:1	XLOC_002732	linc-OR5AC2-1	OR5AC2	NA	chr3:97791367-97806946	inter
CUST_40649_PI429285431	0.92998016	A	0.9340955	A	0.997151528297937	0	lncRNA	41388-1_{1..953}	n410192|NR_036695|lncRNA|Homosapiens||RefGeneNoncode|NR_036695||3.6800500|-0.1843135	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410192|NR_036695|lncRNA|Homosapiens||RefGeneNoncode|NR_036695||3.6800500|-0.1843135	chr1	240170823	240171775	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005414	0.95621395	A	0.92126185	A	1.02452280651806	0	lncRNA	TCONS_00013559	NA	NA	NA	NA	XLOC_006201	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006201), lincRNA [TCONS_00013559]"	chr7:106593710-106635400	hs|7q22.3	Agilent_HUMAN_G3V2	TCONS_00013559	TCONS_00013559	chr7	106593710	106635400	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44416_PI429285431	7.202425	P	6.594588	P	1.52397263762659	0	lncRNA	49029-1_{1..2189}	"gi|388490153|ref|NR_049768.1| Homo sapiens La ribonucleoprotein domain family, member 7 (LARP7), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388490153|ref|NR_049768.1| Homo sapiens La ribonucleoprotein domain family, member 7 (LARP7), transcript variant 4, non-coding RNA"	Chr4	113558120	113560308	+	51574	NR_049768.1	NA	NA	NA	NA	NA	inter
CUST_10285_PI429285431	0.9705432	A	1.7154635	A	0.596700834644991	0	lncRNA	11811-1_{1..547}	lnc-NR2F1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR2F1-2:1	chr5	 92426103	 92426649	+	lnc-NR2F1-2	lnc-NR2F1-2:1	XLOC_004474	linc-NR2F1-2	NA	NA	NA	inter
CUST_49925_PI429285431	0.922233	A	0.92739576	A	0.996427842850207	0	lncRNA	53675-1_{1..535}	hg19_lincRNAsTranscripts_TCONS_l2_00027182 range=chr7:98855833-98859259 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027182 range=chr7:98855833-98859259 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 98855833	 98856367	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31618_PI429285431	0.91012645	A	0.89811957	A	1.00835726359029	0	lncRNA	33374-1_{1..3000}	n338137|BC034233|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|525|NULL|2.1514900|-0.2518129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338137|BC034233|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|525|NULL|2.1514900|-0.2518129	chr1	112533157	112536156	+	NA	NA	NA	NA	KCND3	NA	chr1:112523157-112531777	inner
CUST_43871_PI429285431	10.023488	P	8.287933	P	3.33007576157315	0	lncRNA	48591-1_{1..2306}	"gi|225703115|ref|NR_027405.1| Homo sapiens methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase (MTHFD2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225703115|ref|NR_027405.1| Homo sapiens methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase (MTHFD2), transcript variant 3, non-coding RNA"	Chr2	 74425690	 74427995	+	10797	NR_027405.1	NA	NA	NA	NA	NA	inter
CUST_32071_PI429285431	0.90894264	A	0.8990164	A	1.00690406922353	0	lncRNA	33779-1_{1..1626}	n338632|U50525|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1045|NULL|-0.8843240|-0.3416259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338632|U50525|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1045|NULL|-0.8843240|-0.3416259	chr13	 32534461	 32536086	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44770_PI429285431	1.6504457	A	1.9283845	A	0.824768535050266	0	lncRNA	49311-2_{3001..6000}	"gi|289063384|ref|NR_033327.1| Homo sapiens EF-hand domain (C-terminal) containing 1 (EFHC1), transcript variant B, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|289063384|ref|NR_033327.1| Homo sapiens EF-hand domain (C-terminal) containing 1 (EFHC1), transcript variant B, non-coding RNA"	Chr6	 52287994	 52290993	+	114327	NR_033327.1	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20"	NA	inter
CUST_10617_PI429285431	0.9047947	A	0.90125847	A	1.0024541343241	0	lncRNA	12148-1_{1..207}	lnc-GAS6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GAS6-2:1	chr13	114459516	114459722	-	lnc-GAS6-2	lnc-GAS6-2:1	XLOC_010740	linc-ATP4B-1	FAM70B	NA	chr13:114462216-114469561	inter
CUST_26349_PI429285431	0.9169377	A	0.9206273	A	0.99744583161561	0	lncRNA	27856-1_{1..427}	lnc-NCKAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NCKAP1-1:1	chr2	183973168	183973594	-	lnc-NCKAP1-1	lnc-NCKAP1-1:1	ENSG00000224643.1	AC064871.3	DUSP19	"hg19_refFlat_CCDC79:range=chr16:66788879-668307015'pad=0,hg19_refFlat_CCDC79:range=chr16:66788879-668307015'pad=0 3'pad=0 strand=- repeatMasking=none,-60.10;hg19_refFlat_DUSP19:range=chr2:183943662-1839603865'pad=0,hg19_refFlat_DUSP19:range=chr2:183943662-1839603865'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90chr2:183963168-183964736"	NA	inter
CUST_35375_PI429285431	5.922762	P	6.340858	P	0.748411690831853	0	lncRNA	36783-1_{1..432}	n342422|BC029311|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4915|NULL|-1.3338800|-0.0667408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342422|BC029311|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4915|NULL|-1.3338800|-0.0667408	chr2	 75061106	 75061537	-	NA	NA	NA	NA	HK2	NA	chr2:75051106-75071538	inner
LNCA_21_P0003178	0.9286407	A	0.9123045	A	1.01138774322849	0	lncRNA	TCONS_00006666	NA	NA	NA	NA	XLOC_003262	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003262), lincRNA [TCONS_00006666]"	chr3:134294906-134294847	hs|3q22.2	Agilent_HUMAN_G3V2	TCONS_00006666	TCONS_00006666	chr3	134294847	134294906	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29990_PI429285431	0.90271866	A	0.8957878	A	1.00481566428697	0	lncRNA	31756-1_{1..319}	n334350|S73490|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216478|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216478|1.7016300|-0.2664494	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334350|S73490|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216478|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216478|1.7016300|-0.2664494	chr11	 71903212	 71903530	+	NA	NA	NA	NA	FOLR1	NA	chr11:71900602-71907367	inner
CUST_27347_PI429285431	0.923163	A	1.0169907	A	0.937033349388848	0	lncRNA	28909-1_{1..381}	n324505|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040874|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040874|-1.2560700|-0.5681715	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324505|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040874|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040874|-1.2560700|-0.5681715	chr6	 49893101	 49893481	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48832_PI429285431	0.91926336	A	0.9058807	A	1.00931930989503	0	lncRNA	52670-1_{1..1450}	hg19_lincRNAsTranscripts_TCONS_l2_00019131 range=chr3:6673221-6847146 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019131 range=chr3:6673221-6847146 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	  6673221	  6674670	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33113_PI429285431	1.3433168	A	0.9477318	A	1.31547606591022	0	lncRNA	34712-1_{1..1291}	n339801|CR622189|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2248|NULL|-0.9379520|-0.2035247	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339801|CR622189|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2248|NULL|-0.9379520|-0.2035247	chr18	 13542302	 13543592	+	NA	NA	NA	NA	C18orf1	NA	chr18:13532302-13553593	inner
LNCA_21_P0007096	2.7743778	A	3.0001934	A	0.855111468125514	0	lncRNA	TCONS_00018880	NA	NA	NA	NA	XLOC_008727	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008727), lincRNA [TCONS_00018880]"	chr10:9832697-9832638	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018880	TCONS_00018880	chr10	  9832638	  9832697	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10551_PI429285431	1.3598522	A	0.9286874	A	1.3483217426168	0	lncRNA	12082-1_{1..327}	lnc-NLRP3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NLRP3-1:2	chr1	247556644	247556970	+	lnc-NLRP3-1	lnc-NLRP3-1:2	XLOC_000647	linc-NLRP3-2	NA	NA	NA	inter
CUST_4043_PI429285431	0.915619	A	0.918074	A	0.99829977070198	0	lncRNA	4005-1_{1..1192}	"transcript_id ""ENST00000602510.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602510.1"" | genecode_v17"	chr11	 86544110	 86545301	+	ENSG00000269895.1	ENST00000602510.1	AP000654.4	AP000654.4-001	NA	"hg19_refFlat_OR1Q1:range=chr9:125377017-1253779615'pad=0,hg19_refFlat_OR1Q1:range=chr9:125377017-1253779615'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_OR7E24:range=chr19:9361720-93627395'pad=0,hg19_refFlat_OR7E24:range=chr19:9361720-93627395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00"	NA	inter
CUST_9820_PI429285431	0.9062682	A	0.89888287	A	1.00513224575195	0	lncRNA	11338-1_{1..1870}	lnc-AL445989.1-19:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL445989.1-19:1	chr13	 68626777	 68628646	+	lnc-AL445989.1-19	lnc-AL445989.1-19:1	XLOC_010419	linc-C13orf34-6	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80"	NA	inter
CUST_7290_PI429285431	3.33462	P	4.3646827	P	0.489688866292139	0	lncRNA	8258-1_{1..345}	"transcript_id ""ENST00000363605.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000363605.1"" | genecode_v17"	chr12	 13836476	 13836820	+	ENSG00000200475.1	ENST00000363605.1	RN7SKP162	RN7SKP162-201	GRIN2B	NA	chr12:13826476-13846820	inner
CUST_27843_PI429285431	6.1366453	P	6.467765	P	0.794919293983529	0	lncRNA	29433-1_{1..932}	n325075|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077917|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077917|-1.2466700|-0.4260814	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325075|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077917|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077917|-1.2466700|-0.4260814	chr20	  6659904	  6660835	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26542_PI429285431	7.8361225	P	7.7691073	P	1.04754716382798	0	lncRNA	28048-1_{1..3000}	lnc-AL358813.2-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AL358813.2-2:6	chr1	149646918	149649917	+	lnc-AL358813.2-2	lnc-AL358813.2-2:6	ENSG00000232151.3	RP11-277L2.2	NA	NA	NA	inter
CUST_9817_PI429285431	4.9383974	P	5.273451	P	0.792754683095052	0	lncRNA	11334-1_{1..293}	lnc-RP11-736N17.6.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-736N17.6.1-1:1	chr14	103655667	103655959	-	lnc-RP11-736N17.6.1-1	lnc-RP11-736N17.6.1-1:1	XLOC_011147	linc-CDC42BPB-4	NA	NA	NA	inter
CUST_20543_PI429285431	3.0610332	A	3.8403053	P	0.582660695780237	0	lncRNA	22184-1_{1..980}	lnc-C6orf120-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C6orf120-1:1	chr6	169639320	169640299	+	lnc-C6orf120-1	lnc-C6orf120-1:1	ENSG00000226445.1	XXyac-YX65C7_A.2	THBS2	NA	chr6:169629320-169649660	inner
CUST_29888_PI429285431	2.4327302	A	2.962841	A	0.692501547404243	0	lncRNA	31651-1_{1..212}	n333955|M11428|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194114|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194114|-1.0237300|-0.2866295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333955|M11428|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194114|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194114|-1.0237300|-0.2866295	chr11	  5246696	  5246907	-	NA	NA	NA	NA	HBD	NA	chr11:5254059-5255858	inner
CUST_23028_PI429285431	0.90970093	A	0.9004568	A	1.00642811486326	0	lncRNA	24599-1_{1..335}	lnc-PRR15L-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRR15L-3:1	chr17	 46010454	 46010788	-	lnc-PRR15L-3	lnc-PRR15L-3:1	ENSG00000266601.1	RP11-6N17.3	SP2	NA	chr17:46000454-46006323	inter
CUST_42477_PI429285431	1.2003227	A	0.918037	A	1.21612009021404	0	lncRNA	45235-1_{1..60}	ENST00000408373 ncrna:snoRNA chromosome:GRCh37:2:42667517:42667576:1 gene:ENSG00000221300 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408373 ncrna:snoRNA chromosome:GRCh37:2:42667517:42667576:1 gene:ENSG00000221300 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 42667517	 42667576	+	ENSG00000221300	ENST00000408373	NA	NA	KCNG3	NA	chr2:42669157-42677576	inter
CUST_37291_PI429285431	0.9184816	A	0.919412	A	0.999355303769184	0	lncRNA	38400-1_{1..549}	n345734|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1283|NULL|-1.5299600|-0.3472612	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345734|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1283|NULL|-1.5299600|-0.3472612	chr6	138051336	138051884	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24546_PI429285431	6.5372896	P	6.8147335	P	0.825051510977136	0	lncRNA	26096-1_{1..844}	lnc-MSX2-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MSX2-4:3	chr5	173953867	173954710	+	lnc-MSX2-4	lnc-MSX2-4:3	ENSG00000249306.1	RP11-267A15.1	NA	NA	NA	inter
LNCA_21_P0001870	0.92049766	A	0.9056379	A	1.01035322834664	0	lncRNA	THC2676600	NA	NA	NA	NA	XLOC_001505	NA	NA	THC2676600	NA	"BROAD Institute lincRNA (XLOC_001505), lincRNA [TCONS_00002915]"	chr2:066126568-066126627	hs|2p14	Agilent_HUMAN_G3V2	THC2676600	THC2676600	chr2	 66126568	 66126627	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25440_PI429285431	6.5567403	P	6.4883895	P	1.04851739785155	0	lncRNA	26970-1_{1..2386}	lnc-LCN15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-LCN15-1:1	chr9	139703179	139705564	-	lnc-LCN15-1	lnc-LCN15-1:1	ENSG00000228544.1	RP11-216L13.8	C9orf86	"hg19_refFlat_KIAA1984:range=chr9:139690850-1397021425'pad=0,hg19_refFlat_KIAA1984:range=chr9:139690850-1397021425'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70chr9:139702374-139713300"	NA	inner
CUST_13366_PI429285431	5.172051	P	5.331861	P	0.895142951669973	0	lncRNA	15004-1_{1..3000}	lnc-PCYOX1L-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCYOX1L-2:2	chr5	148800044	148803043	+	lnc-PCYOX1L-2	lnc-PCYOX1L-2:2	XLOC_004598	linc-ARHGEF37-2	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.01;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60"	NA	inter
LNCA_21_P0010630	0.92069286	A	0.9061357	A	1.01014133268103	0	lncRNA	ENST00000421931	NA	U80773	NA	NA	XLOC_l2_000969	NA	ENST00000421931	THC2642695	NA	"BROAD Institute lincRNA (XLOC_l2_000969), lincRNA [TCONS_l2_00001305]"	chr1:83444805-83444746	hs|1p31.1	Agilent_HUMAN_G3V2	ENST00000421931	ENST00000421931	chr1	 83444746	 83444805	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52183_PI429285431	2.5545342	A	3.3977063	P	0.55741661081905	0	lncRNA	55701-1_{1..564}	hg19_lincRNAsTranscripts_TCONS_l2_00017658 range=chr22:25723229-25742265 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017658 range=chr22:25723229-25742265 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 25723229	 25723792	+	NA	NA	NA	NA	LRP5L	NA	chr22:25745514-25752265	inter
CUST_22612_PI429285431	6.3032155	P	6.1412964	P	1.11877436332528	0	lncRNA	24197-1_{1..571}	lnc-GLUD1-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLUD1-4:7	chr10	 89096543	 89097113	-	lnc-GLUD1-4	lnc-GLUD1-4:7	ENSG00000223482.1	RP11-322M19.1	NA	NA	NA	inter
CUST_6856_PI429285431	9.125753	P	9.010927	P	1.08284443837089	0	lncRNA	6805-1_{1..438}	"transcript_id ""ENST00000430068.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430068.1"" | genecode_v17"	chr21	 38338812	 38339249	+	ENSG00000224790.1	ENST00000430068.1	AP000704.5	AP000704.5-001	HLCS	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-63.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40chr21:38328812-38354128"	NA	inner
CUST_23782_PI429285431	1.0595099	A	1.0161287	A	1.03052621122546	0	lncRNA	25347-1_{1..558}	lnc-WHAMM-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WHAMM-2:2	chr15	 83423381	 83423938	+	lnc-WHAMM-2	lnc-WHAMM-2:2	ENSG00000250988.3	RP11-752G15.6	FSD2	NA	chr15:83428024-83433789	inter
CUST_49709_PI429285431	0.92048836	A	0.92745334	A	0.995183878634555	0	lncRNA	53486-1_{1..1937}	hg19_lincRNAsTranscripts_TCONS_l2_00026419 range=chr7:22689207-22693030 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026419 range=chr7:22689207-22693030 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 22689207	 22691143	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48098_PI429285431	3.740522	A	3.496235	A	1.18450722627838	0	lncRNA	51972-2_{3001..4975}	"gi|397138424|ref|XR_159489.1| PREDICTED: Homo sapiens uncharacterized LOC100996798 (LOC100996798), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138424|ref|XR_159489.1| PREDICTED: Homo sapiens uncharacterized LOC100996798 (LOC100996798), misc_RNA"	NA	NA	NA	NA	NA	XR_159489.1	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30"	NA	Unknown
CUST_44315_PI429285431	0.89965737	A	1.351002	A	0.731360882498513	0	lncRNA	48947-1_{1..3000}	"gi|213512111|ref|NR_024480.1| Homo sapiens uncharacterized LOC100131551 (LOC100131551), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|213512111|ref|NR_024480.1| Homo sapiens uncharacterized LOC100131551 (LOC100131551), non-coding RNA"	Chr3	194018988	194021987	-	100131551	NR_024480.1	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10"	NA	inter
CUST_47264_PI429285431	2.4879591	A	2.3208585	A	1.12279971284875	0	lncRNA	51336-1_{1..3000}	"gi|211971042|ref|NR_024377.1| Homo sapiens fer-1-like 4 (C. elegans) pseudogene (FER1L4), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|211971042|ref|NR_024377.1| Homo sapiens fer-1-like 4 (C. elegans) pseudogene (FER1L4), non-coding RNA"	NA	NA	NA	NA	NA	NR_024377.1	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.91"	NA	Unknown
CUST_13225_PI429285431	7.9638367	P	8.214734	P	0.840373573118274	0	lncRNA	14853-1_{1..382}	lnc-DIAPH3-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DIAPH3-3:2	chr13	 61192968	 61193349	-	lnc-DIAPH3-3	lnc-DIAPH3-3:2	XLOC_010634	linc-DIAPH3-1	NA	NA	NA	inter
LNCA_21_P0011668	8.4016695	P	8.729572	P	0.796693936516449	0	lncRNA	TCONS_l2_00012262	NA	NA	NA	NA	XLOC_l2_006575	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006575), lincRNA [TCONS_l2_00012262]"	chr19:7849592-7849651	hs|19p13.2	Agilent_HUMAN_G3V2	TCONS_l2_00012262	TCONS_l2_00012262	chr19	  7849592	  7849651	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36754_PI429285431	0.9110104	A	1.4798758	A	0.674146759216347	0	lncRNA	37927-1_{1..420}	n345234|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_783|NULL|-1.1824600|-0.3224349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345234|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_783|NULL|-1.1824600|-0.3224349	chr13	100574717	100575136	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44414_PI429285431	1.5233322	A	0.9164873	A	1.52292500560907	0	lncRNA	49027-2_{3001..4645}	"gi|372622369|ref|NR_045756.2| Homo sapiens collagen, type XXV, alpha 1 (COL25A1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372622369|ref|NR_045756.2| Homo sapiens collagen, type XXV, alpha 1 (COL25A1), transcript variant 4, non-coding RNA"	Chr4	109734877	109736521	-	84570	NR_045756.2	NA	NA	NA	NA	NA	inter
CUST_46_PI429285431	5.4851665	P	6.0889745	P	0.658014828103164	0	lncRNA	45-1_{1..496}	"transcript_id ""ENST00000530834.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530834.1"" | genecode_v17"	chr11	125809107	125809602	+	ENSG00000255124.1	ENST00000530834.1	RP11-680F20.5	RP11-680F20.5-001	LOC338667	NA	chr11:125817319-125823597	inter
LNCA_21_P0014578	0.9296154	A	0.9180577	A	1.00804336259241	0	lncRNA	XR_110369	XR_110369	XR_110369	NA	NA	LOC100507065	uncharacterized LOC100507065	NA	THC2574866	NA	"PREDICTED: Homo sapiens hypothetical LOC100507065, transcript variant 1 (LOC100507065), miscRNA [XR_110369]"	chr12:65893504-65893445	hs|12q14.3	Agilent_HUMAN_G3V2	XR_110369	XR_110369	chr12	 65893445	 65893504	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002230	1.6528873	A	0.91869754	A	1.6634629803233	0	lncRNA	TCONS_00002913	NA	NA	NA	NA	XLOC_001504	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001504), lincRNA [TCONS_00002913]"	chr2:65961087-65981911	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00002913	TCONS_00002913	chr2	 65961087	 65981911	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3875_PI429285431	1.5708778	A	2.0117629	A	0.736682511890693	0	lncRNA	3844-1_{1..421}	"transcript_id ""ENST00000532380.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532380.1"" | genecode_v17"	chr11	 22467234	 22467654	-	ENSG00000255323.1	ENST00000532380.1	CTD-2140G10.1	CTD-2140G10.1-001	NA	NA	NA	inter
CUST_29464_PI429285431	8.185966	P	7.286508	P	1.86536506030602	0	lncRNA	31222-1_{1..610}	n332877|AF085994|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066873|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066873|1.1550900|-0.4428154	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332877|AF085994|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066873|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066873|1.1550900|-0.4428154	chr7	  6080765	  6081374	-	NA	NA	NA	NA	EIF2AK1	NA	chr7:6070765-6096068	inner
CUST_28525_PI429285431	1.0003182	A	1.2395356	A	0.847204759874459	0	lncRNA	30195-1_{1..229}	n325871|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050620|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050620|-1.2810600|-0.5336116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325871|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050620|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050620|-1.2810600|-0.5336116	chr10	120753037	120753265	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22052_PI429285431	1.2898538	A	0.9852904	A	1.23504482134911	0	lncRNA	23660-1_{1..515}	lnc-C1orf186-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf186-1:2	chr1	206306069	206306583	-	lnc-C1orf186-1	lnc-C1orf186-1:2	ENSG00000240754.1	RP11-38J22.6	NA	NA	NA	inter
CUST_30002_PI429285431	6.4123783	P	6.192569	P	1.16457963846879	0	lncRNA	31768-1_{1..357}	n334388|S79616|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216858|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216858|1.6507900|-0.1808494	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334388|S79616|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216858|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216858|1.6507900|-0.1808494	chr1	117064503	117064859	-	NA	NA	NA	NA	CD58	NA	chr1:117057156-117097188	inner
CUST_7460_PI429285431	2.1154566	A	0.9165546	A	2.29564888260356	0	lncRNA	9103-1_{1..1940}	lnc-ZNF345-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF345-1:1	chr19	 37295554	 37297493	+	lnc-ZNF345-1	lnc-ZNF345-1:1	ENSG00000247207	AC020928.2	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80"	NA	inter
CUST_31298_PI429285431	1.0395774	A	2.03495	A	0.50160630934847	0	lncRNA	33083-1_{1..2754}	n337761|AK123754|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|143|NULL|-0.1669420|-0.3393892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337761|AK123754|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|143|NULL|-0.1669420|-0.3393892	chrX	 74588261	 74591014	-	NA	NA	NA	NA	ZDHHC15	"hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.97;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90chrX:74588262-74601027"	NA	inner
CUST_30277_PI429285431	0.9239498	A	1.2413651	A	0.802506342757458	0	lncRNA	32053-1_{1..341}	n335172|AY425005|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254567|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254567|-1.0756700|-0.2080181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335172|AY425005|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254567|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254567|-1.0756700|-0.2080181	chr7	 87229433	 87229773	-	NA	NA	NA	NA	ABCB1	NA	chr7:87219433-87342639	inner
CUST_51828_PI429285431	0.91164446	A	0.905901	A	1.00398899806375	0	lncRNA	55381-1_{1..1309}	hg19_lincRNAsTranscripts_TCONS_l2_00013072 range=chr19:36805260-36822633 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013072 range=chr19:36805260-36822633 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 36805260	 36806568	-	NA	NA	NA	NA	ZFP14	NA	chr19:36825355-36832633	inter
CUST_46794_PI429285431	5.967527	P	4.903867	P	2.09022753834929	0	lncRNA	50939-2_{3001..4607}	"gi|239735497|ref|NR_015341.2| Homo sapiens leucine rich repeat containing 37B pseudogene 1 (LRRC37BP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|239735497|ref|NR_015341.2| Homo sapiens leucine rich repeat containing 37B pseudogene 1 (LRRC37BP1), non-coding RNA"	Chr17	 28906483	 28908089	+	147172	NR_015341.2	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90"	NA	inter
LNCA_21_P0014660	3.9162014	P	3.1375227	P	1.71555894928236	0	lncRNA	XR_110939	XR_110939	XR_110939	NA	Hs.674998	LOC100506543	uncharacterized LOC100506543	NA	THC2538490	NA	"PREDICTED: Homo sapiens hypothetical LOC100506543 (LOC100506543), miscRNA [XR_110939]"	chr1_gl000192_random:4555-4496	NA	Agilent_HUMAN_G3V2	XR_110939	XR_110939	chr1_gl000192_random	     4496	     4555	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46172_PI429285431	4.849358	P	5.227142	P	0.76961882862514	0	lncRNA	50419-1_{1..1769}	"gi|343403823|ref|NR_003272.2| Homo sapiens paraspeckle component 1 (PSPC1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|343403823|ref|NR_003272.2| Homo sapiens paraspeckle component 1 (PSPC1), transcript variant 2, non-coding RNA"	Chr13	 20248892	 20250660	-	55269	NR_003272.2	NA	NA	NA	NA	NA	inter
CUST_9412_PI429285431	5.2855306	P	5.5070634	P	0.85765373284806	0	lncRNA	10915-1_{1..778}	lnc-PPDPF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPDPF-1:1	chr20	 62136763	 62137540	+	lnc-PPDPF-1	lnc-PPDPF-1:1	XLOC_013614	linc-PPDPF-1	EEF1A2	NA	chr20:62126763-62130505	inter
CUST_44396_PI429285431	2.2409081	A	0.92327917	A	2.49256120408858	0	lncRNA	49012-2_{3001..4262}	"gi|332801092|ref|NR_003249.2| Homo sapiens heterogeneous nuclear ribonucleoprotein D-like (HNRPDL), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|332801092|ref|NR_003249.2| Homo sapiens heterogeneous nuclear ribonucleoprotein D-like (HNRPDL), transcript variant 3, non-coding RNA"	Chr4	 83346717	 83347978	-	9987	NR_003249.2	NA	NA	NA	NA	NA	inter
CUST_45001_PI429285431	2.7729425	A	2.8748772	A	0.931782603170542	0	lncRNA	49507-2_{3001..6000}	"gi|262205173|ref|NR_030672.1| Homo sapiens KIAA1324-like (KIAA1324L), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|262205173|ref|NR_030672.1| Homo sapiens KIAA1324-like (KIAA1324L), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_030672.1	NA	NA	NA	NA	NA	Unknown
CUST_3547_PI429285431	9.483952	P	9.502531	P	0.987204584926187	0	lncRNA	3517-1_{1..508}	"transcript_id ""ENST00000427109.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427109.1"" | genecode_v17"	chr9	132094579	132095086	+	ENSG00000233901.1	ENST00000427109.1	RP11-65J3.1	RP11-65J3.1-004	C9orf106	NA	chr9:132084579-132084882	inter
CUST_43930_PI429285431	5.52792	P	4.557604	P	1.95926969585415	0	lncRNA	48641-1_{1..3000}	"gi|310923210|ref|NR_027145.2| Homo sapiens LIMS3-LOC440895 readthrough (LIMS3-LOC440895), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310923210|ref|NR_027145.2| Homo sapiens LIMS3-LOC440895 readthrough (LIMS3-LOC440895), non-coding RNA"	Chr2	110656009	110659008	+	100271835	NR_027145.2	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20"	NA	inter
CUST_47757_PI429285431	3.4396515	P	2.2139468	A	2.33869657981322	0	lncRNA	51697-1_{1..3000}	"gi|385137078|ref|NR_047616.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 46, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137078|ref|NR_047616.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 46, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047616.1	NA	NA	NA	NA	NA	inter
CUST_21032_PI429285431	0.92471945	A	0.9101926	A	1.0101201105507	0	lncRNA	22660-1_{1..438}	lnc-C5orf22-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C5orf22-3:1	chr5	 31754326	 31754763	+	lnc-C5orf22-3	lnc-C5orf22-3:1	ENSG00000249688.1	RP11-5N11.7	NA	NA	NA	inter
CUST_15189_PI429285431	0.98472095	A	1.5410187	A	0.680045060909336	0	lncRNA	16855-1_{1..245}	lnc-RWDD3-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RWDD3-6:1	chr1	 96284207	 96284451	+	lnc-RWDD3-6	lnc-RWDD3-6:1	XLOC_000311	linc-PTBP2-3	NA	NA	NA	inter
CUST_14387_PI429285431	4.068535	P	4.1804986	P	0.925327774278829	0	lncRNA	16048-1_{1..537}	lnc-TMEM18-9:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TMEM18-9:4	chr2	   863804	   864340	-	lnc-TMEM18-9	lnc-TMEM18-9:4	XLOC_001936	linc-TMEM18-10	NA	NA	NA	inter
CUST_37684_PI429285431	2.0539	A	0.93383193	A	2.17357227726886	0	lncRNA	38776-1_{1..892}	n346172|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1722|NULL|-1.2861900|-0.3330444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n346172|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1722|NULL|-1.2861900|-0.3330444	chr9	 92316545	 92317436	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33006_PI429285431	7.4236016	P	6.1599846	P	2.40096937212337	0	lncRNA	34621-1_{1..2729}	n339688|AK056178|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2133|NULL|-0.1059850|-0.2642703	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339688|AK056178|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2133|NULL|-0.1059850|-0.2642703	chr20	 43120515	 43123243	+	NA	NA	NA	NA	TTPAL	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.11;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50chr20:43110515-43123244"	NA	inner
CUST_52187_PI429285431	5.4618607	P	5.8897843	P	0.743330855332489	0	lncRNA	55705-1_{1..786}	hg19_lincRNAsTranscripts_TCONS_l2_00017660 range=chr22:25844064-25855713 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017660 range=chr22:25844064-25855713 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 25844064	 25844849	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47856_PI429285431	7.2991295	P	7.1142206	P	1.13674519038962	0	lncRNA	51760-2_{3001..4034}	"gi|410171123|ref|XR_171156.1| PREDICTED: Homo sapiens rootletin-like (LOC101060339), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171123|ref|XR_171156.1| PREDICTED: Homo sapiens rootletin-like (LOC101060339), misc_RNA"	NA	NA	NA	NA	NA	XR_171156.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002321	2.2805166	A	2.5278668	A	0.842442310115107	0	lncRNA	TCONS_00003951	NA	NA	NA	NA	XLOC_001768	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001768), lincRNA [TCONS_00003951]"	chr2:177722051-177722631	hs|2q31.1	Agilent_HUMAN_G3V2	TCONS_00003951	TCONS_00003951	chr2	177722051	177722631	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46378_PI429285431	4.797393	P	5.5848875	P	0.579349363386006	0	lncRNA	50595-1_{1..830}	"gi|213512533|ref|NR_015415.1| Homo sapiens DICER1 antisense RNA 1 (DICER1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|213512533|ref|NR_015415.1| Homo sapiens DICER1 antisense RNA 1 (DICER1-AS1), non-coding RNA"	Chr14	 95624025	 95624854	+	400242	NR_015415.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60"	NA	inter
CUST_45936_PI429285431	8.076046	P	7.5625877	P	1.42746789650278	0	lncRNA	50240-1_{1..3000}	"gi|214010187|ref|NR_024516.1| Homo sapiens amyloid beta (A4) precursor-like protein 2 (APLP2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|214010187|ref|NR_024516.1| Homo sapiens amyloid beta (A4) precursor-like protein 2 (APLP2), transcript variant 6, non-coding RNA"	Chr11	129939716	129942715	+	334	NR_024516.1	NA	NA	NA	NA	NA	inter
CUST_20950_PI429285431	2.5403116	A	1.7525492	A	1.72639477072402	0	lncRNA	22581-1_{1..419}	lnc-ZNF862-1:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF862-1:15	chr7	149524858	149525276	+	lnc-ZNF862-1	lnc-ZNF862-1:15	ENSG00000197558.7	SSPO	SSPO	NA	chr7:149514858-149531054	inner
CUST_51437_PI429285431	2.155292	A	2.4289327	A	0.827229362428926	0	lncRNA	55014-1_{1..285}	hg19_lincRNAsTranscripts_TCONS_l2_00009632 range=chr16:22386850-22393983 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009632 range=chr16:22386850-22393983 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 22386850	 22387134	+	NA	NA	NA	NA	CDR2	NA	chr16:22376850-22385938	inter
CUST_21999_PI429285431	8.731819	P	8.353947	P	1.29942376877495	0	lncRNA	23608-1_{1..496}	lnc-HNRNPU-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HNRNPU-1:1	chr1	245018726	245019221	-	lnc-HNRNPU-1	lnc-HNRNPU-1:1	ENSG00000188206.5	HNRNPU-AS1	HNRNPU	NA	chr1:245013602-245027827	inner
CUST_41456_PI429285431	0.9023875	A	0.9030143	A	0.999565629713326	0	lncRNA	42640-1_{1..75}	ENST00000578405 ncrna:miRNA chromosome:GRCh37:11:103720634:103720708:1 gene:ENSG00000264200 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578405 ncrna:miRNA chromosome:GRCh37:11:103720634:103720708:1 gene:ENSG00000264200 gene_biotype:miRNA transcript_biotype:miRNA	chr11	103720634	103720708	+	ENSG00000264200	ENST00000578405	NA	NA	NA	NA	NA	inter
LNCA_21_P0008387	0.9265727	A	2.1998725	A	0.413712427377725	0	lncRNA	TCONS_00022629	NA	NA	NA	NA	XLOC_010931	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010931), lincRNA [TCONS_00022629]"	chr14:101150228-101154021	hs|14q32.2	Agilent_HUMAN_G3V2	TCONS_00022629	TCONS_00022629	chr14	101150228	101154021	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_739_PI429285431	0.9090793	A	0.9028456	A	1.00433022000466	0	lncRNA	731-1_{1..455}	"transcript_id ""ENST00000474561.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000474561.1"" | genecode_v17"	chr2	  9283295	  9283749	+	ENSG00000240980.1	ENST00000474561.1	RP11-734K21.4	RP11-734K21.4-001	NA	NA	NA	inter
CUST_51321_PI429285431	4.019062	P	4.4889245	P	0.722033409852601	0	lncRNA	54925-1_{1..620}	hg19_lincRNAsTranscripts_TCONS_l2_00008616 range=chr15:42967903-42974233 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008616 range=chr15:42967903-42974233 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 42967903	 42968522	+	NA	NA	NA	NA	STARD9	NA	chr15:42957903-42984233	inner
CUST_4128_PI429285431	7.677397	P	7.7369947	P	0.959531650408162	0	lncRNA	4087-1_{1..714}	"transcript_id ""ENST00000532071.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532071.1"" | genecode_v17"	chr11	134931675	134932388	-	ENSG00000255512.1	ENST00000532071.1	AP005135.2	AP005135.2-001	NA	NA	NA	inter
CUST_37187_PI429285431	0.9022385	A	0.90191704	A	1.00022284391868	0	lncRNA	38300-1_{1..3000}	n345619|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1168|NULL|-1.3382700|-0.3289288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345619|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1168|NULL|-1.3382700|-0.3289288	chr4	   248107	   251106	-	NA	NA	NA	NA	ZNF732	"hg19_refFlat_ZNF729:range=chr19:22469328-224999785'pad=0,hg19_refFlat_ZNF729:range=chr19:22469328-224999785'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90;hg19_refFlat_ZNF595:range=chr4:53383-873405'pad=0,hg19_refFlat_ZNF595:range=chr4:53383-873405'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90chr4:264464-270058"	NA	inter
CUST_2121_PI429285431	0.9170179	A	0.91745114	A	0.999699746000751	0	lncRNA	2112-1_{1..869}	"transcript_id ""ENST00000565798.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565798.2"" | genecode_v17"	chr5	 29153643	 29154511	+	ENSG00000259786.2	ENST00000565798.2	CTD-2118P12.1	CTD-2118P12.1-003	NA	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30"	NA	inter
CUST_6115_PI429285431	3.1785486	P	3.5847511	P	0.754607058441073	0	lncRNA	6041-1_{1..719}	"transcript_id ""ENST00000582300.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582300.1"" | genecode_v17"	chr18	 21538060	 21538778	-	ENSG00000265752.1	ENST00000582300.1	RP11-403A21.1	RP11-403A21.1-001	LAMA3	NA	chr18:21528060-21535030	inter
CUST_14035_PI429285431	4.6685953	P	4.7123165	P	0.970149373044799	0	lncRNA	15681-1_{1..810}	lnc-AQP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AQP2-1:1	chr12	 50323178	 50323987	+	lnc-AQP2-1	lnc-AQP2-1:1	XLOC_009748	linc-AQP2-1	NA	NA	NA	inter
CUST_19714_PI429285431	5.3454924	P	5.246515	P	1.07101404548977	0	lncRNA	21371-1_{1..936}	lnc-AC090186.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC090186.1-1:3	chr8	 52858996	 52859931	+	lnc-AC090186.1-1	lnc-AC090186.1-1:3	ENSG00000228801.4	RP11-110G21.1	LOC100287313	NA	chr8:52848996-52859733	inter
CUST_50368_PI429285431	1.1208191	A	1.2502779	A	0.91417432127418	0	lncRNA	54082-1_{1..2146}	hg19_lincRNAsTranscripts_TCONS_l2_00030542 range=chrX:75876640-75913441 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030542 range=chrX:75876640-75913441 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 75876640	 75878785	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19881_PI429285431	4.0613503	P	3.807426	P	1.19244630155112	0	lncRNA	21537-1_{1..411}	lnc-CDC25C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDC25C-1:1	chr5	137684991	137685401	-	lnc-CDC25C-1	lnc-CDC25C-1:1	ENSG00000249971.1	RP11-256P1.1	KDM3B	NA	chr5:137688285-137695330	inner
LNCA_21_P0009117	2.5189564	A	3.9448493	P	0.3721889426079	0	lncRNA	XR_109344	XR_109344	XR_109344	NA	NA	LOC100506268	uncharacterized LOC100506268	NA	THC2651395	NA	"PREDICTED: Homo sapiens hypothetical LOC100506268 (LOC100506268), miscRNA [XR_109344]"	chr16:89565614-89565673	hs|16q24.3	Agilent_HUMAN_G3V2	XR_109344	XR_109344	chr16	 89565614	 89565673	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51822_PI429285431	2.3303351	A	2.5305636	A	0.870412692820412	0	lncRNA	55375-1_{1..508}	hg19_lincRNAsTranscripts_TCONS_l2_00012483 range=chr19:36087727-36092394 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012483 range=chr19:36087727-36092394 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 36087727	 36088234	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23551_PI429285431	2.7193513	A	2.528472	A	1.1414592053848	0	lncRNA	25118-1_{1..823}	lnc-NEBL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NEBL-2:1	chr10	 20017334	 20018156	-	lnc-NEBL-2	lnc-NEBL-2:1	ENSG00000233968.1	RP11-354E11.2	C10orf112	NA	chr10:20007334-20023407	inter
CUST_38973_PI429285431	10.633879	P	10.066114	P	1.48222555102932	0	lncRNA	39957-1_{1..1674}	n385198|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tuh.2||4.9731100|-0.3695327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385198|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tuh.2||4.9731100|-0.3695327	chr7	 65216091	 65217764	+	NA	NA	NA	NA	NA	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.90"	NA	inter
CUST_15064_PI429285431	1.6202512	A	1.0836858	A	1.45051518625852	0	lncRNA	16727-1_{1..672}	lnc-EIF2B5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2B5-1:1	chr3	184432819	184433490	+	lnc-EIF2B5-1	lnc-EIF2B5-1:1	XLOC_002951	linc-VPS8-3	MAGEF1	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00chr3:184428155-184429836"	NA	inter
CUST_28375_PI429285431	8.86994	P	9.089102	P	0.859064285337064	0	lncRNA	30026-1_{1..518}	n325689|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045342|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045342|-1.1121500|-0.3371933	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325689|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045342|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045342|-1.1121500|-0.3371933	chr13	 77134635	 77135152	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12276_PI429285431	2.746073	A	2.756974	A	0.992472477369583	0	lncRNA	13885-1_{1..395}	lnc-SYNC-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYNC-2:1	chr1	 33190679	 33191073	-	lnc-SYNC-2	lnc-SYNC-2:1	XLOC_000778	linc-SYNC-2	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80"	NA	inter
CUST_34086_PI429285431	0.9048996	A	0.8994205	A	1.003805043584	0	lncRNA	35615-1_{1..2390}	n340911|AL157459|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3376|NULL|-0.7307420|-0.1872561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340911|AL157459|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3376|NULL|-0.7307420|-0.1872561	chr17	 77759428	 77761817	+	NA	NA	NA	NA	CBX2	NA	chr17:77751977-77761449	inner
CUST_9585_PI429285431	1.5807358	A	1.6192732	A	0.973641522153272	0	lncRNA	11101-1_{1..1578}	lnc-MYH13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYH13-1:1	chr17	 10182345	 10183922	-	lnc-MYH13-1	lnc-MYH13-1:1	XLOC_012387	linc-GAS7-2	NA	NA	NA	inter
CUST_9530_PI429285431	1.8543938	A	1.7630329	A	1.06537468080101	0	lncRNA	11041-1_{1..1561}	lnc-UBL4B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBL4B-1:1	chr1	110652227	110653787	+	lnc-UBL4B-1	lnc-UBL4B-1:1	XLOC_000340	linc-UBL4B	UBL4B	NA	chr1:110655062-110656569	inter
CUST_19655_PI429285431	2.1967614	A	1.8571775	A	1.26539157894022	0	lncRNA	21311-1_{1..386}	lnc-FBXO45-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXO45-2:1	chr3	196159073	196159458	+	lnc-FBXO45-2	lnc-FBXO45-2:1	ENSG00000225822.2	UBXN7-AS1	UBXN7	"hg19_refFlat_UBXN7:range=chr3:196083556-1961592705'pad=0,hg19_refFlat_UBXN7:range=chr3:196083556-1961592705'pad=0 3'pad=0 strand=- repeatMasking=none,-103.30chr3:196149073-196159345"	NA	inner
CUST_796_PI429285431	0.91574043	A	0.9543447	A	0.973596394182442	0	lncRNA	789-1_{1..679}	"transcript_id ""ENST00000602445.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602445.1"" | genecode_v17"	chr2	 20878014	 20878692	-	ENSG00000270100.1	ENST00000602445.1	RP11-130L8.1	RP11-130L8.1-001	C2orf43	NA	chr2:20884818-20888692	inter
CUST_10352_PI429285431	1.4252223	A	1.1614053	A	1.20065112011284	0	lncRNA	11880-1_{1..245}	lnc-FAM20C-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM20C-5:2	chr7	    80778	    81022	+	lnc-FAM20C-5	lnc-FAM20C-5:2	XLOC_005952	linc-FAM20C-3	NA	NA	NA	inter
CUST_40610_PI429285431	0.8965775	A	0.89626026	A	1.00021991819002	0	lncRNA	41356-1_{1..1348}	n410092|NR_036524_4|lncRNA|Homosapiens||RefGeneNoncode|NR_036524_4||-1.1147500|-0.4310605	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410092|NR_036524_4|lncRNA|Homosapiens||RefGeneNoncode|NR_036524_4||-1.1147500|-0.4310605	chr6	  2881168	  2882515	+	NA	NA	NA	NA	SERPINB9	"hg19_refFlat_SERPINB9:range=chr6:2890397-29008455'pad=0,hg19_refFlat_SERPINB9:range=chr6:2890397-29008455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90chr6:2887504-2903545"	NA	inner
LNCA_21_P0005802	1.514604	A	1.6132302	A	0.933921891252782	0	lncRNA	TCONS_00014938	NA	NA	NA	NA	XLOC_007012	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007012), lincRNA [TCONS_00014938]"	chr8:16225231-16225172	hs|8p22	Agilent_HUMAN_G3V2	TCONS_00014938	TCONS_00014938	chr8	 16225172	 16225231	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3939_PI429285431	0.90936214	A	1.8125056	A	0.53472036929645	0	lncRNA	3909-1_{1..860}	"transcript_id ""ENST00000532068.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532068.1"" | genecode_v17"	chr11	 45755545	 45756404	-	ENSG00000255426.1	ENST00000532068.1	CTD-2210P24.2	CTD-2210P24.2-001	NA	NA	NA	inter
CUST_41639_PI429285431	0.90171915	A	0.8958103	A	1.00410410157072	0	lncRNA	43036-1_{1..69}	ENST00000584834 ncrna:miRNA chromosome:GRCh37:13:21007917:21007985:-1 gene:ENSG00000263978 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584834 ncrna:miRNA chromosome:GRCh37:13:21007917:21007985:-1 gene:ENSG00000263978 gene_biotype:miRNA transcript_biotype:miRNA	chr13	 21007917	 21007985	-	ENSG00000263978	ENST00000584834	NA	NA	CRYL1	NA	chr13:20997917-21017985	inner
CUST_5626_PI429285431	1.0550398	A	1.245683	A	0.876214989307383	0	lncRNA	5554-1_{1..419}	"transcript_id ""ENST00000563289.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563289.1"" | genecode_v17"	chr16	 77624703	 77625121	+	ENSG00000261154.1	ENST00000563289.1	RP11-571O6.1	RP11-571O6.1-001	NA	NA	NA	inter
CUST_14497_PI429285431	1.0547754	A	1.2423141	A	0.878102524949719	0	lncRNA	16164-1_{1..560}	lnc-GALNT2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GALNT2-2:1	chr1	230142520	230143079	+	lnc-GALNT2-2	lnc-GALNT2-2:1	XLOC_000604	linc-GALNT2	NA	NA	NA	inter
CUST_13419_PI429285431	0.9236931	A	0.9231851	A	1.00035218076881	0	lncRNA	15058-1_{1..632}	lnc-NDC80-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDC80-1:2	chr18	  2370779	  2371410	+	lnc-NDC80-1	lnc-NDC80-1:2	XLOC_012609	linc-NDC80-1	NA	NA	NA	inter
CUST_25565_PI429285431	1.1306455	A	0.90212995	A	1.17162879034434	0	lncRNA	27094-1_{1..467}	lnc-RABEP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RABEP2-3:1	chr16	 28989795	 28990261	-	lnc-RABEP2-3	lnc-RABEP2-3:1	ENSG00000260367.1	RP11-264B17.4	LAT	NA	chr16:28996147-29000145	inner
CUST_27831_PI429285431	1.0810685	A	0.8864425	A	1.14442744415095	0	lncRNA	29418-1_{1..484}	n325060|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078027|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078027|-1.2194700|-0.3149958	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325060|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078027|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078027|-1.2194700|-0.3149958	chr20	 12864686	 12865169	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32419_PI429285431	0.91395664	A	1.1947932	A	0.823113588868754	0	lncRNA	34095-1_{1..534}	n339014|U44029|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1443|NULL|0.0356637|-0.2442590	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339014|U44029|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1443|NULL|0.0356637|-0.2442590	chr2	174776573	174777106	+	NA	NA	NA	NA	SP3	NA	chr2:174771187-174787086	inner
CUST_49640_PI429285431	0.9097354	A	0.9063537	A	1.00234676517334	0	lncRNA	53423-1_{1..1551}	hg19_lincRNAsTranscripts_TCONS_l2_00025732 range=chr7:26451825-26577877 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025732 range=chr7:26451825-26577877 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 26451825	 26453375	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15857_PI429285431	2.1443808	A	1.5295688	A	1.53135843021739	0	lncRNA	17547-1_{1..804}	lnc-POLR2B-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLR2B-1:12	chr4	 58071240	 58072043	+	lnc-POLR2B-1	lnc-POLR2B-1:12	XLOC_003547	linc-LPHN3-8	NA	NA	NA	inter
CUST_34330_PI429285431	0.9213805	A	0.9059694	A	1.01073941848896	0	lncRNA	35823-1_{1..2352}	n341193|AK096065|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3659|NULL|-1.2300500|-0.3436244	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341193|AK096065|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3659|NULL|-1.2300500|-0.3436244	chr7	 17980193	 17982544	+	NA	NA	NA	NA	SNX13	NA	chr7:17970193-17980131	inter
LNCA_21_P0003648	2.254574	A	1.9511743	A	1.2340490168782	0	lncRNA	TCONS_00008217	NA	NA	NA	NA	XLOC_003679	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003679), lincRNA [TCONS_00008217]"	chr4:124249466-124249525	hs|4q28.1	Agilent_HUMAN_G3V2	TCONS_00008217	TCONS_00008217	chr4	124249466	124249525	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18822_PI429285431	3.4442408	P	4.2932825	P	0.55515337029759	0	lncRNA	20516-1_{1..2545}	lnc-WDR73-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR73-5:3	chr15	 84898604	 84901148	-	lnc-WDR73-5	lnc-WDR73-5:3	ENSG00000225151	AC103965.1	NA	NA	NA	inter
CUST_27137_PI429285431	3.0429564	A	2.8562255	A	1.13818170889911	0	lncRNA	28673-1_{1..418}	n324253|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323712|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323712|-1.1808300|-0.2172020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324253|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323712|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323712|-1.1808300|-0.2172020	chr7	  3202783	  3203200	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40376_PI429285431	0.9302083	A	1.39763	A	0.723256004184863	0	lncRNA	41172-1_{1..2084}	n409157|NR_033297|lncRNA|Homosapiens||RefGeneNoncode|NR_033297||0.0419831|-0.2140161	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409157|NR_033297|lncRNA|Homosapiens||RefGeneNoncode|NR_033297||0.0419831|-0.2140161	chr1	 45959597	 45961680	-	NA	NA	NA	NA	TESK2	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30chr1:45949597-45956840"	NA	inter
CUST_51057_PI429285431	1.3283527	A	1.1596155	A	1.12407414481701	0	lncRNA	54696-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00007082 range=chr13:24513744-24528372 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007082 range=chr13:24513744-24528372 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 24516744	 24519743	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32047_PI429285431	3.8376498	P	3.6209397	P	1.16208057167162	0	lncRNA	33761-1_{1..2982}	n338608|BC033567|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1014|NULL|0.2421090|-0.2266781	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338608|BC033567|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1014|NULL|0.2421090|-0.2266781	chr1	246845409	246848390	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80"	NA	inter
CUST_3141_PI429285431	1.9716319	A	0.8913151	A	2.11450035122088	0	lncRNA	3120-1_{1..430}	"transcript_id ""ENST00000519967.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519967.1"" | genecode_v17"	chr8	 62738028	 62738457	+	ENSG00000254119.1	ENST00000519967.1	RP11-705O24.1	RP11-705O24.1-005	NA	NA	NA	inter
CUST_20920_PI429285431	5.878838	P	6.433202	P	0.680957186350617	0	lncRNA	22551-1_{1..1526}	lnc-RPS25-1:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS25-1:17	chr11	118899932	118901457	-	lnc-RPS25-1	lnc-RPS25-1:17	ENSG00000137700.10	SLC37A4	SLC37A4	NA	chr11:118895061-118901616	inner
CUST_10956_PI429285431	0.9029645	A	0.8960261	A	1.00482091579868	0	lncRNA	12497-1_{1..875}	lnc-WDR7-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR7-2:2	chr18	 54711191	 54712065	+	lnc-WDR7-2	lnc-WDR7-2:2	XLOC_012688	linc-ST8SIA3-2	NA	NA	NA	inter
CUST_40812_PI429285431	7.3052616	P	7.2810297	P	1.01693812363428	0	lncRNA	41517-1_{1..2878}	n410580|NR_037846_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037846_3||0.2497170|-0.3287040	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410580|NR_037846_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037846_3||0.2497170|-0.3287040	chr6	  3040681	  3043558	+	NA	NA	NA	NA	NA	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70"	NA	inter
LNCA_21_P0001635	0.9206215	A	0.90508837	A	1.01082491524625	0	lncRNA	TCONS_00001844	NA	NA	NA	NA	XLOC_001229	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001229), lincRNA [TCONS_00001844]"	chr1:225072425-225072366	hs|1q42.12	Agilent_HUMAN_G3V2	TCONS_00001844	TCONS_00001844	chr1	225072366	225072425	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6705_PI429285431	0.93950754	A	0.91277635	A	1.01870136950822	0	lncRNA	6654-1_{1..425}	"transcript_id ""ENST00000431915.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000431915.1"" | genecode_v17"	chr20	 46579543	 46579967	+	ENSG00000234967.1	ENST00000431915.1	RP11-347D21.1	RP11-347D21.1-001	NA	NA	NA	inter
CUST_48777_PI429285431	8.601823	P	9.035601	P	0.740320559781716	0	lncRNA	52615-1_{1..296}	hg19_lincRNAsTranscripts_TCONS_l2_00015068 range=chr2:200773626-200775881 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015068 range=chr2:200773626-200775881 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	200773626	200773921	-	NA	NA	NA	NA	C2orf69	NA	chr2:200775979-200785881	inter
CUST_41662_PI429285431	9.202902	P	9.025227	P	1.1310596371348	0	lncRNA	43086-1_{1..76}	ENST00000581063 ncrna:miRNA chromosome:GRCh37:1:32224261:32224336:-1 gene:ENSG00000266580 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581063 ncrna:miRNA chromosome:GRCh37:1:32224261:32224336:-1 gene:ENSG00000266580 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 32224261	 32224336	-	ENSG00000266580	ENST00000581063	NA	NA	BAI2	NA	chr1:32214261-32229648	inner
CUST_35972_PI429285431	0.9914776	A	0.89887977	A	1.06628849761574	0	lncRNA	37320-1_{1..3000}	n344595|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_143|NULL|-1.2970000|-0.2761046	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344595|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_143|NULL|-1.2970000|-0.2761046	chr2	208084574	208087573	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25277_PI429285431	6.096513	P	6.241934	P	0.904115504629381	0	lncRNA	26807-1_{1..1915}	lnc-CECR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CECR1-1:1	chr22	 17747413	 17749327	-	lnc-CECR1-1	lnc-CECR1-1:1	ENSG00000241832.1	CECR3	NA	NA	NA	inter
CUST_18785_PI429285431	7.812935	P	8.391707	P	0.669533431556537	0	lncRNA	20481-1_{1..518}	lnc-RNF144A-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RNF144A-2:5	chr2	  7562704	  7563221	+	lnc-RNF144A-2	lnc-RNF144A-2:5	ENSG00000229727	AC013460.1	NA	NA	NA	inter
CUST_41167_PI429285431	0.9810239	A	1.2052228	A	0.85607025259485	0	lncRNA	41991-1_{1..82}	ENST00000583943 ncrna:miRNA chromosome:GRCh37:6:44403378:44403459:1 gene:ENSG00000266619 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583943 ncrna:miRNA chromosome:GRCh37:6:44403378:44403459:1 gene:ENSG00000266619 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 44403378	 44403459	+	ENSG00000266619	ENST00000583943	NA	NA	CDC5L	NA	chr6:44393378-44413459	inner
CUST_32083_PI429285431	3.9937756	P	2.8682473	A	2.18181427688172	0	lncRNA	33790-1_{1..1576}	n338647|AF052107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1061|NULL|-1.2327500|-0.4137472	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338647|AF052107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1061|NULL|-1.2327500|-0.4137472	chr2	  8992819	  8994394	-	NA	NA	NA	NA	MBOAT2	NA	chr2:8996701-9004376	inter
CUST_23203_PI429285431	7.6695647	P	7.980665	P	0.806026792416575	0	lncRNA	24775-1_{1..1566}	lnc-NBPF6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NBPF6-2:1	chr1	108742548	108744113	+	lnc-NBPF6-2	lnc-NBPF6-2:1	ENSG00000260879.1	RP11-483I13.5	SLC25A24	"hg19_refFlat_SLC25A24:range=chr1:108679275-1087427605'pad=0,hg19_refFlat_SLC25A24:range=chr1:108679275-1087427605'pad=0 3'pad=0 strand=- repeatMasking=none,-103.80chr1:108732548-108742974"	NA	inner
CUST_7238_PI429285431	0.910988	A	0.9125848	A	0.998893794878559	0	lncRNA	7828-1_{1..331}	"transcript_id ""ENST00000410513.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410513.1"" | genecode_v17"	chr6	126196314	126196644	+	ENSG00000222445.1	ENST00000410513.1	RN7SKP56	RN7SKP56-201	NCOA7	NA	chr6:126186314-126206644	inner
CUST_13079_PI429285431	6.672252	P	6.813536	P	0.906711821696854	0	lncRNA	14706-1_{1..403}	lnc-NDFIP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDFIP1-2:1	chr5	141615755	141616157	+	lnc-NDFIP1-2	lnc-NDFIP1-2:1	XLOC_004585	linc-ARHGAP26-5	NA	NA	NA	inter
LNCA_21_P0010411	2.962971	A	3.91499	P	0.51690856049864	0	lncRNA	TCONS_00029582	NA	NA	NA	NA	XLOC_014217	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014217), lincRNA [TCONS_00029582]"	chr22:34602081-34602140	hs|22q12.3	Agilent_HUMAN_G3V2	TCONS_00029582	TCONS_00029582	chr22	 34602081	 34602140	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41003_PI429285431	6.004269	P	5.870776	P	1.09694637477443	0	lncRNA	41666-2_{3001..3127}	n411545|NR_040016|lncRNA|Homosapiens||RefGeneNoncode|NR_040016||1.6971800|-0.2933111	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411545|NR_040016|lncRNA|Homosapiens||RefGeneNoncode|NR_040016||1.6971800|-0.2933111	chr21	 34807792	 34807918	-	NA	NA	NA	NA	IFNGR2	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_IFNGR2:range=chr21:34775850-348092695'pad=0,hg19_refFlat_IFNGR2:range=chr21:34775850-348092695'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr21:34794792-34809828"	NA	inner
CUST_34684_PI429285431	1.4759333	A	1.759634	A	0.821481106684112	0	lncRNA	36136-1_{1..2799}	n341589|AK093981|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4060|NULL|-1.1291100|-0.2853145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341589|AK093981|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4060|NULL|-1.1291100|-0.2853145	chr8	117947898	117950696	-	NA	NA	NA	NA	C8orf85	"hg19_refFlat_AARD:range=chr8:117950483-1179549405'pad=0,hg19_refFlat_AARD:range=chr8:117950483-1179549405'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.80chr8:117950464-117956239"	NA	inner
CUST_33737_PI429285431	3.2090442	A	3.256075	P	0.967926362477939	0	lncRNA	35294-1_{1..1329}	n340515|CR591190|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2977|NULL|3.9324700|-0.1541818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340515|CR591190|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2977|NULL|3.9324700|-0.1541818	chr17	 15163829	 15165157	+	NA	NA	NA	NA	PMP22	"hg19_refFlat_PMP22:range=chr17:15134234-151640445'pad=0,hg19_refFlat_PMP22:range=chr17:15134234-151640445'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80chr17:15153829-15168644"	NA	inner
CUST_5431_PI429285431	1.2189375	A	1.0935736	A	1.09078283294984	0	lncRNA	5365-1_{1..400}	"transcript_id ""ENST00000574540.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000574540.1"" | genecode_v17"	chr16	 13444412	 13444811	+	ENSG00000262801.1	ENST00000574540.1	U91319.1	U91319.1-002	NA	NA	NA	inter
CUST_1449_PI429285431	0.90875584	A	0.9084253	A	1.00022913911742	0	lncRNA	1438-1_{1..458}	"transcript_id ""ENST00000476460.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000476460.1"" | genecode_v17"	chr3	118227258	118227715	-	ENSG00000243276.1	ENST00000476460.1	RP11-384F7.1	RP11-384F7.1-002	NA	NA	NA	inter
CUST_4909_PI429285431	0.9054949	A	0.8977097	A	1.00541087562521	0	lncRNA	4851-1_{1..446}	"transcript_id ""ENST00000554307.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554307.1"" | genecode_v17"	chr14	 80359423	 80359868	-	ENSG00000258416.1	ENST00000554307.1	RP11-526N18.1	RP11-526N18.1-001	NA	NA	NA	inter
CUST_31156_PI429285431	10.184812	P	10.217302	P	0.97773133830395	0	lncRNA	32951-1_{1..255}	n337535|EF217321|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395416|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395416|0.1143790|-0.0757037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337535|EF217321|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395416|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395416|0.1143790|-0.0757037	chr22	 19950160	 19950414	+	NA	NA	NA	NA	COMT	NA	chr22:19940160-19957498	inner
CUST_9423_PI429285431	1.0561746	A	0.92261904	A	1.09699394300693	0	lncRNA	10928-1_{1..1628}	lnc-ATXN7-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATXN7-6:2	chr3	 64440413	 64442040	+	lnc-ATXN7-6	lnc-ATXN7-6:2	XLOC_002685	linc-SLC25A26-5	NA	NA	NA	inter
CUST_32094_PI429285431	1.8903656	A	2.8780768	A	0.504277164003612	0	lncRNA	33799-2_{3001..3751}	n338656|AK095374|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1070|NULL|-1.1321900|-0.2718374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338656|AK095374|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1070|NULL|-1.1321900|-0.2718374	chr13	 37720103	 37720853	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51525_PI429285431	5.6200027	P	5.4045005	P	1.1611080240225	0	lncRNA	55098-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00011139 range=chr17:20432533-20460098 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011139 range=chr17:20432533-20460098 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 20432533	 20435532	-	NA	NA	NA	NA	CDRT15L2	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70chr17:20422533-20470098"	NA	inter
CUST_36709_PI429285431	0.9092529	A	0.9053124	A	1.00273507999016	0	lncRNA	37890-1_{1..3000}	n345197|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_746|NULL|-1.3517400|-0.2884354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345197|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_746|NULL|-1.3517400|-0.2884354	chr13	 45921524	 45924523	-	NA	NA	NA	NA	TPT1	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-14.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40chr13:45911524-45915297"	NA	inter
CUST_22603_PI429285431	1.1281111	A	1.4657016	A	0.791361892452862	0	lncRNA	24188-1_{1..507}	lnc-FMNL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FMNL2-2:1	chr2	152965330	152965836	+	lnc-FMNL2-2	lnc-FMNL2-2:1	ENSG00000225214.1	AC079790.2	CACNB4	"hg19_refFlat_CACNB4:range=chr2:152695633-1529551635'pad=0,hg19_refFlat_CACNB4:range=chr2:152695633-1529551635'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20;hg19_refFlat_CACNB4:range=chr2:152695633-1529555255'pad=0,hg19_refFlat_CACNB4:range=chr2:152695633-1529555255'pad=0 3'pad=0 strand=- repeatMasking=none,-94.50chr2:152955330-152955593"	NA	inter
CUST_20209_PI429285431	1.2487106	A	0.91054857	A	1.26414506741897	0	lncRNA	21853-1_{1..330}	lnc-ZBTB4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZBTB4-1:1	chr17	  7346578	  7346907	-	lnc-ZBTB4-1	lnc-ZBTB4-1:1	ENSG00000263301.1	RP11-104H15.8	TMEM102	NA	chr17:7338762-7340998	inner
LNCA_21_P0002282	0.9538721	A	0.92343545	A	1.02132119478011	0	lncRNA	THC2684169	NA	NA	NA	NA	XLOC_001644	NA	NA	THC2684169	NA	"BROAD Institute lincRNA (XLOC_001644), lincRNA [TCONS_00003838]"	chr2:121808203-121808262	hs|2q14.2	Agilent_HUMAN_G3V2	THC2684169	THC2684169	chr2	121808203	121808262	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011960	5.5933194	P	5.7139263	P	0.919800635752402	0	lncRNA	ENST00000449819	XR_109883	XR_109883	NA	Hs.116176	XLOC_l2_008226	NA	ENST00000449819	THC2665394	NA	"PREDICTED: Homo sapiens hypothetical LOC100506797, transcript variant 3 (LOC100506797), miscRNA [XR_109883]"	chr2:118943807-118940840	hs|2q14.2	Agilent_HUMAN_G3V2	ENST00000449819	ENST00000449819	chr2	118940840	118943807	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26797_PI429285431	0.9081919	A	2.1228254	A	0.430882526679193	0	lncRNA	28305-1_{1..726}	n323861|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057132|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057132|-1.1078100|-0.2492703	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323861|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057132|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057132|-1.1078100|-0.2492703	chrX	 70320133	 70320858	-	NA	NA	NA	NA	MED12	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_FOXO4:range=chrX:70316379-703219345'pad=0,hg19_refFlat_FOXO4:range=chrX:70316379-703219345'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10chrX:70338406-70344750"	NA	inner
CUST_7658_PI429285431	0.9154666	A	1.0710224	A	0.897786432948035	0	lncRNA	9290-1_{1..2904}	lnc-CHP2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHP2.1-1:1	chr16	 23889391	 23892294	+	lnc-CHP2.1-1	lnc-CHP2.1-1:1	ENSG00000249591	ENST00000514276	PRKCB	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90chr16:23879391-23899817"	NA	inner
CUST_17685_PI429285431	7.310989	P	7.3387904	P	0.980914026368255	0	lncRNA	19414-1_{1..517}	lnc-TMEM116-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM116-2:3	chr12	112279488	112280004	-	lnc-TMEM116-2	lnc-TMEM116-2:3	XLOC_010202	linc-BRAP-2	MAPKAPK5	NA	chr12:112280279-112289779	inter
CUST_40583_PI429285431	9.668321	P	9.3392105	P	1.25623859624443	0	lncRNA	41334-1_{1..911}	n410028|NR_036465|lncRNA|Homosapiens||RefGeneNoncode|NR_036465||2.0998100|-0.3377824	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410028|NR_036465|lncRNA|Homosapiens||RefGeneNoncode|NR_036465||2.0998100|-0.3377824	chr11	 85339621	 85340531	+	NA	NA	NA	NA	DLG2	NA	chr11:85329621-85338314	inner
CUST_47399_PI429285431	3.422581	P	3.4158878	P	1.00465015126062	0	lncRNA	51444-1_{1..3000}	"gi|397139747|ref|XR_109689.2| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 322 (LINC00322), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139747|ref|XR_109689.2| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 322 (LINC00322), misc_RNA"	NA	NA	NA	NA	NA	XR_109689.2	NA	NA	NA	NA	NA	Unknown
CUST_14064_PI429285431	1.7608638	A	1.7908778	A	0.979410793279192	0	lncRNA	15710-1_{1..327}	lnc-FAM84B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM84B-1:1	chr8	127634520	127634846	-	lnc-FAM84B-1	lnc-FAM84B-1:1	XLOC_007210	linc-FAM84B-5	NA	NA	NA	inter
CUST_45526_PI429285431	7.0507755	P	7.191072	P	0.907332662833671	0	lncRNA	49934-1_{1..2516}	"gi|302699230|ref|NR_036533.1| Homo sapiens uncharacterized LOC100499489 (LOC100499489), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302699230|ref|NR_036533.1| Homo sapiens uncharacterized LOC100499489 (LOC100499489), non-coding RNA"	Chr10	 22724354	 22726869	-	100499489	NR_036533.1	NA	NA	NA	NA	NA	inter
CUST_26181_PI429285431	8.358209	P	8.081716	P	1.21124692242566	0	lncRNA	27692-1_{1..601}	lnc-ACOT12-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACOT12-1:5	chr5	 80597106	 80597706	-	lnc-ACOT12-1	lnc-ACOT12-1:5	ENSG00000247572.2	CTC-281B15.1	ZCCHC9	NA	chr5:80597402-80607342	inter
LNCA_21_P0013021	1.004085	A	0.93913555	A	1.04604828709338	0	lncRNA	TCONS_l2_00024133	NA	NA	NA	NA	XLOC_l2_012467	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012467), lincRNA [TCONS_l2_00024133]"	chr6:28957830-28957889	hs|6p22.1	Agilent_HUMAN_G3V2	TCONS_l2_00024133	TCONS_l2_00024133	chr6	 28957830	 28957889	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4881_PI429285431	2.6943324	A	2.9265103	P	0.851348720713205	0	lncRNA	4824-1_{1..651}	"transcript_id ""ENST00000561794.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561794.1"" | genecode_v17"	chr14	 71648173	 71648823	+	ENSG00000259907.1	ENST00000561794.1	RP6-91H8.2	RP6-91H8.2-001	NA	NA	NA	inter
CUST_50557_PI429285431	18.045525	P	18.086988	P	0.971669102947138	0	lncRNA	54249-1_{1..811}	hg19_lincRNAsTranscripts_TCONS_l2_00030893 range=chrY:10035280-10036679 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030893 range=chrY:10035280-10036679 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrY	 10035280	 10036090	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14671_PI429285431	0.9258917	A	0.9334145	A	0.994799163814219	0	lncRNA	16340-1_{1..414}	lnc-NUFIP1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUFIP1-1:4	chr13	 45462155	 45462568	-	lnc-NUFIP1-1	lnc-NUFIP1-1:4	XLOC_010590	linc-TSC22D1-1	NA	NA	NA	inter
CUST_22761_PI429285431	2.806849	A	3.5902073	P	0.581012738632621	0	lncRNA	24344-1_{1..3000}	lnc-STUB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STUB1-1:1	chr16	   739001	   742000	+	lnc-STUB1-1	lnc-STUB1-1:1	ENSG00000261659.2	LA16c-313D11.12	FBXL16	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_WDR24:range=chr16:734734-7396405'pad=0,hg19_refFlat_WDR24:range=chr16:734734-7396405'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90chr16:742500-752413"	NA	inner
CUST_24774_PI429285431	0.9640097	A	1.2838922	A	0.801135123217477	0	lncRNA	26317-2_{3001..3177}	lnc-SLC7A6OS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC7A6OS-2:1	chr16	 68262872	 68263048	-	lnc-SLC7A6OS-2	lnc-SLC7A6OS-2:1	ENSG00000262160.1	RP11-96D1.11	NFATC3	"hg19_refFlat_NFATC3:range=chr16:68119585-682603745'pad=0,hg19_refFlat_NFATC3:range=chr16:68119585-682603745'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.20chr16:68249872-68263162"	NA	inner
CUST_1802_PI429285431	0.9266033	A	0.91336125	A	1.00922094297178	0	lncRNA	1789-1_{1..425}	"transcript_id ""ENST00000562355.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562355.1"" | genecode_v17"	chr4	 76007229	 76007653	-	ENSG00000260265.1	ENST00000562355.1	RP11-44F21.5	RP11-44F21.5-003	NA	NA	NA	inter
LNCA_21_P0012817	1.0204777	A	0.9562445	A	1.04552908787885	0	lncRNA	ENST00000515660	NA	NA	NA	NA	XLOC_l2_011413	NA	ENST00000515660	THC2669150	NA	"BROAD Institute lincRNA (XLOC_l2_011413), lincRNA [TCONS_l2_00022091]"	chr4:188476250-188454334	hs|4q35.2	Agilent_HUMAN_G3V2	ENST00000515660	ENST00000515660	chr4	188454334	188476250	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7472_PI429285431	1.4612724	A	0.91153646	A	1.46381774528432	0	lncRNA	9114-1_{1..578}	lnc-KLF14-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF14-1:2	chr7	130597710	130598287	-	lnc-KLF14-1	lnc-KLF14-1:2	ENSG00000226380	AC058791.1	NA	NA	NA	inter
CUST_51075_PI429285431	1.0888034	A	1.1580677	A	0.953123918135021	0	lncRNA	54713-1_{1..832}	hg19_lincRNAsTranscripts_TCONS_l2_00006815 range=chr13:44495592-44561640 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006815 range=chr13:44495592-44561640 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 44495592	 44496423	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23106_PI429285431	6.963351	P	7.041745	P	0.947111379169197	0	lncRNA	24677-1_{1..773}	lnc-JPH1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JPH1-3:3	chr8	 75779100	 75779872	-	lnc-JPH1-3	lnc-JPH1-3:3	ENSG00000253706.1	RP11-758M4.4	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00"	NA	inter
CUST_38203_PI429285431	5.5178404	P	5.534919	P	0.988231809812774	0	lncRNA	39271-1_{1..3000}	n381557|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001laz.2||0.3048070|-0.3809799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381557|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001laz.2||0.3048070|-0.3809799	chr10	115671514	115674513	+	NA	NA	NA	NA	NHLRC2	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20chr10:115661514-115672265"	NA	inner
CUST_31358_PI429285431	2.9136283	A	2.7801309	A	1.09694972029879	0	lncRNA	33138-1_{1..1140}	n337824|BC040635|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|207|NULL|-1.0245300|-0.2304309	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337824|BC040635|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|207|NULL|-1.0245300|-0.2304309	chrX	107979769	107980908	-	NA	NA	NA	NA	IRS4	NA	chrX:107975727-107979607	inter
CUST_20041_PI429285431	8.494001	P	8.631681	P	0.908979712241918	0	lncRNA	21692-1_{1..3000}	lnc-SFTA2-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SFTA2-10:1	chr6	 30842554	 30845553	-	lnc-SFTA2-10	lnc-SFTA2-10:1	ENSG00000237775.1	DDR1-AS1	DDR1	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr6:30851861-30853695"	NA	inter
CUST_15050_PI429285431	4.9847307	P	5.036735	P	0.964595309571821	0	lncRNA	16713-1_{1..388}	lnc-RASA1-3:21	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASA1-3:21	chr5	 87588385	 87588772	+	lnc-RASA1-3	lnc-RASA1-3:21	XLOC_004457	linc-POLR3G-10	NA	NA	NA	inter
CUST_3009_PI429285431	0.9151107	A	0.9053993	A	1.00675413652263	0	lncRNA	2988-1_{1..707}	"transcript_id ""ENST00000602443.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602443.1"" | genecode_v17"	chr8	 11060474	 11061180	+	ENSG00000270076.1	ENST00000602443.1	AF131215.8	AF131215.8-001	XKR6	NA	chr8:11050474-11058875	inter
CUST_33387_PI429285431	0.9116841	A	0.9055525	A	1.00425914574144	0	lncRNA	34965-1_{1..638}	n340105|AF086377|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2564|NULL|-0.8534630|-0.4262891	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340105|AF086377|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2564|NULL|-0.8534630|-0.4262891	chr10	 96098032	 96098669	+	NA	NA	NA	NA	PLCE1	"hg19_refFlat_NOC3L:range=chr10:96093934-961225955'pad=0,hg19_refFlat_NOC3L:range=chr10:96093934-961225955'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60chr10:96088032-96088149"	NA	inner
CUST_45692_PI429285431	6.6148243	P	6.3709702	P	1.18415185231564	0	lncRNA	50064-1_{1..2440}	"gi|282721136|ref|NR_033191.1| Homo sapiens protein phosphatase 2, regulatory subunit B, delta (PPP2R2D), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|282721136|ref|NR_033191.1| Homo sapiens protein phosphatase 2, regulatory subunit B, delta (PPP2R2D), transcript variant 2, non-coding RNA"	NW_004070870.1	    25720	    28159	+	55844	NR_033191.1	NA	NA	NA	NA	NA	Unknown
CUST_24165_PI429285431	3.7454002	P	3.4247074	P	1.24893015662691	0	lncRNA	25716-1_{1..912}	lnc-MTX1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTX1-1:4	chr1	155174826	155175737	+	lnc-MTX1-1	lnc-MTX1-1:4	ENSG00000231064.1	RP11-263K19.4	THBS3	"hg19_refFlat_THBS3:range=chr1:155165632-1551776675'pad=0,hg19_refFlat_THBS3:range=chr1:155165632-1551776675'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70chr1:155165379-155177690"	NA	inner
CUST_586_PI429285431	6.3727374	P	5.995421	P	1.29892344069077	0	lncRNA	578-1_{1..385}	"transcript_id ""ENST00000457955.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000457955.1"" | genecode_v17"	chr1	222988389	222988773	+	ENSG00000228106.1	ENST00000457955.1	RP11-452F19.3	RP11-452F19.3-002	DISP1	NA	chr1:222988431-223020571	inner
CUST_15414_PI429285431	1.39763	A	1.0562463	A	1.26697117329702	0	lncRNA	17101-1_{1..622}	lnc-CWC27-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CWC27-1:1	chr5	 64365743	 64366364	+	lnc-CWC27-1	lnc-CWC27-1:1	XLOC_004407	linc-PPWD1	NA	NA	NA	inter
LNCA_21_P0006256	0.9240783	A	0.92173785	A	1.00162359292084	0	lncRNA	TCONS_00016272	NA	NA	NA	NA	XLOC_007647	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007647), lincRNA [TCONS_00016272]"	chr9:11829269-11829210	hs|9p23	Agilent_HUMAN_G3V2	TCONS_00016272	TCONS_00016272	chr9	 11829210	 11829269	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013527	6.5827556	P	7.196695	P	0.653410072676745	0	lncRNA	ENST00000521696	NA	NA	NA	NA	XLOC_l2_014602	NA	ENST00000521696	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014602), lincRNA [TCONS_l2_00028340]"	chr8:100025178-100025119	hs|8q22.2	Agilent_HUMAN_G3V2	ENST00000521696	ENST00000521696	chr8	100025119	100025178	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37095_PI429285431	0.90165716	A	0.9026177	A	0.999334425999889	0	lncRNA	38220-1_{1..834}	n345538|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1087|NULL|-1.3551600|-0.2268521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345538|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1087|NULL|-1.3551600|-0.2268521	chr2	101845072	101845905	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28037_PI429285431	0.9029883	A	0.90595263	A	0.997947392504142	0	lncRNA	29653-1_{1..438}	n325300|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327021|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327021|-1.2029100|-0.2973184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325300|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327021|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327021|-1.2029100|-0.2973184	chr2	 59515851	 59516288	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014749	6.3504124	P	6.439181	P	0.940325013146592	0	lncRNA	XR_112040	XR_112040	XR_112040	NA	NA	LOC100509213	uncharacterized LOC100509213	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100509213 (LOC100509213), miscRNA [XR_112040]"	chr1:24114297-24114238	hs|1p36.11	Agilent_HUMAN_G3V2	XR_112040	XR_112040	chr1	 24114238	 24114297	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2118_PI429285431	1.4349157	A	0.93453336	A	1.41458840393934	0	lncRNA	2109-1_{1..491}	"transcript_id ""ENST00000510512.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510512.1"" | genecode_v17"	chr5	 27412720	 27413210	-	ENSG00000248490.1	ENST00000510512.1	CTD-3007L5.1	CTD-3007L5.1-001	NA	NA	NA	inter
CUST_10021_PI429285431	1.0705506	A	0.93010503	A	1.10224548696976	0	lncRNA	11546-1_{1..283}	lnc-PELI2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PELI2-6:1	chr14	 56970275	 56970557	+	lnc-PELI2-6	lnc-PELI2-6:1	XLOC_010842	linc-C14orf101-2	NA	NA	NA	inter
CUST_22111_PI429285431	7.121797	P	6.9365053	P	1.13704685067247	0	lncRNA	23716-1_{1..561}	lnc-RP11-809H16.2.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-809H16.2.1-2:3	chr15	 69383255	 69383815	+	lnc-RP11-809H16.2.1-2	lnc-RP11-809H16.2.1-2:3	ENSG00000212766.4	LINC00277	NA	NA	NA	inter
CUST_10138_PI429285431	3.6104074	P	3.9793465	P	0.77435171461152	0	lncRNA	11660-1_{1..1593}	lnc-RP11-17M16.1.1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-17M16.1.1-2:4	chr18	 74269932	 74271524	+	lnc-RP11-17M16.1.1-2	lnc-RP11-17M16.1.1-2:4	XLOC_012726	linc-ZNF236-4	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20"	NA	inter
CUST_21455_PI429285431	4.167879	P	4.05422	P	1.08196887668623	0	lncRNA	23073-1_{1..2400}	lnc-RXRG-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RXRG-1:2	chr1	165550592	165552991	-	lnc-RXRG-1	lnc-RXRG-1:2	ENSG00000237463.1	RP11-280O1.2	NA	"hg19_refFlat_RPS2:range=chr16:2012099-20146265'pad=0,hg19_refFlat_RPS2:range=chr16:2012099-20146265'pad=0 3'pad=0 strand=- repeatMasking=none,-96.80"	NA	inter
CUST_7145_PI429285431	0.9051939	A	0.902696	A	1.00173291210211	0	lncRNA	7080-1_{1..882}	"transcript_id ""ENST00000417071.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417071.1"" | genecode_v17"	chrY	 14774468	 14775349	+	ENSG00000233864.3	ENST00000417071.1	TTTY15	TTTY15-003	NA	NA	NA	inter
CUST_12757_PI429285431	1.4767067	A	0.92225605	A	1.46860930914971	0	lncRNA	14381-1_{1..3000}	lnc-SYNM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYNM-1:1	chr15	 99638610	 99641609	+	lnc-SYNM-1	lnc-SYNM-1:1	XLOC_011380	linc-SYNM-1	SYNM	NA	chr15:99645286-99651439	inter
CUST_47056_PI429285431	8.507591	P	9.864059	P	0.390537232038031	0	lncRNA	51143-1_{1..1459}	"gi|260763988|ref|NR_029375.1| Homo sapiens WD repeat domain 83 (WDR83), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|260763988|ref|NR_029375.1| Homo sapiens WD repeat domain 83 (WDR83), transcript variant 3, non-coding RNA"	Chr19	 12777618	 12779076	+	84292	NR_029375.1	NA	NA	NA	"hg19_refFlat_WDR83OS:range=chr19:12779173-127802175'pad=0,hg19_refFlat_WDR83OS:range=chr19:12779173-127802175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30"	NA	inter
CUST_35218_PI429285431	12.916588	P	12.829642	P	1.06211943067655	0	lncRNA	36618-1_{1..694}	n342204|CR614989|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4694|NULL|1.5965800|-0.4403507	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342204|CR614989|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4694|NULL|1.5965800|-0.4403507	chr1	   568149	   568842	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28490_PI429285431	1.5729439	A	0.9029709	A	1.59104319089945	0	lncRNA	30157-1_{1..772}	n325832|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280452|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280452|-1.0720400|-0.3908159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325832|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280452|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280452|-1.0720400|-0.3908159	chr11	 60139784	 60140555	+	NA	NA	NA	NA	MS4A7	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90chr11:60145958-60163427"	NA	inner
CUST_17633_PI429285431	4.585083	P	4.557813	P	1.01908189968244	0	lncRNA	19361-1_{1..285}	lnc-IL1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL1B-1:1	chr2	113581838	113582122	-	lnc-IL1B-1	lnc-IL1B-1:1	XLOC_002277	linc-IL1A	IL1B	NA	chr2:113587337-113591878	inter
CUST_17338_PI429285431	0.9252281	A	0.92643845	A	0.999161401130746	0	lncRNA	19056-1_{1..1022}	lnc-NEIL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NEIL3-1:1	chr4	178303743	178304764	+	lnc-NEIL3-1	lnc-NEIL3-1:1	XLOC_003794	linc-ODZ3-6	NA	NA	NA	inter
CUST_27033_PI429285431	0.92861944	A	0.92964536	A	0.999289139225842	0	lncRNA	28564-1_{1..689}	n324139|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051951|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051951|-1.2093800|-0.3101112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324139|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051951|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051951|-1.2093800|-0.3101112	chr9	 23884987	 23885675	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20"	NA	inter
CUST_10494_PI429285431	1.8254392	A	1.832443	A	0.995157100613344	0	lncRNA	12022-1_{1..486}	lnc-IDH3B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IDH3B-1:2	chr20	  2672712	  2673197	-	lnc-IDH3B-1	lnc-IDH3B-1:2	XLOC_013631	linc-IDH3B-1	EBF4	NA	chr20:2673524-2682959	inter
CUST_6006_PI429285431	1.5034475	A	2.9920251	A	0.356363726349496	0	lncRNA	5931-1_{1..351}	"transcript_id ""ENST00000575647.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000575647.1"" | genecode_v17"	chr17	 78991769	 78992119	-	ENSG00000262873.1	ENST00000575647.1	CTD-2561B21.11	CTD-2561B21.11-002	NA	NA	NA	inter
CUST_51196_PI429285431	7.1733103	P	8.011295	P	0.559424483267997	0	lncRNA	54815-2_{3001..3577}	hg19_lincRNAsTranscripts_TCONS_l2_00008933 range=chr15:23186906-23208186 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008933 range=chr15:23186906-23208186 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 23189906	 23190482	-	NA	NA	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
CUST_47031_PI429285431	8.658164	P	8.684369	P	0.982000047883398	0	lncRNA	51121-1_{1..2846}	"gi|321267474|ref|NR_037699.1| Homo sapiens scaffold attachment factor B (SAFB), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|321267474|ref|NR_037699.1| Homo sapiens scaffold attachment factor B (SAFB), transcript variant 5, non-coding RNA"	Chr19	  5623046	  5625891	+	6294	NR_037699.1	NA	NA	NA	NA	NA	inter
CUST_36286_PI429285431	0.92077726	A	0.9579596	A	0.974556450421484	0	lncRNA	37519-2_{3001..6000}	n344813|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_362|NULL|-1.3714300|-0.2082293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344813|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_362|NULL|-1.3714300|-0.2082293	chr1	 94161693	 94164692	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90"	NA	inner
CUST_4918_PI429285431	0.9080101	A	0.9039546	A	1.00281501312019	0	lncRNA	4861-1_{1..539}	"transcript_id ""ENST00000554451.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554451.1"" | genecode_v17"	chr14	 83254822	 83255360	-	ENSG00000258683.1	ENST00000554451.1	RP11-11K13.1	RP11-11K13.1-001	NA	NA	NA	inter
CUST_18600_PI429285431	11.392383	P	12.096601	P	0.613775089798887	0	lncRNA	20307-1_{1..548}	lnc-FAM149B1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM149B1-1:2	chr10	 75013651	 75014198	+	lnc-FAM149B1-1	lnc-FAM149B1-1:2	ENSG00000227540	RP11-152N13.5	TTC18	"hg19_refFlat_TTC18:range=chr10:75013733-751145545'pad=0,hg19_refFlat_TTC18:range=chr10:75013733-751145545'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70chr10:75013516-75024102"	NA	inner
CUST_40121_PI429285431	0.8984581	A	1.3192363	A	0.747021566857364	0	lncRNA	40963-2_{3001..6000}	n407667|NR_027136|lncRNA|Homosapiens||RefGeneNoncode|NR_027136||2.1882900|-0.1812133	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n407667|NR_027136|lncRNA|Homosapiens||RefGeneNoncode|NR_027136||2.1882900|-0.1812133	chr1	 15441310	 15444309	-	NA	NA	NA	NA	KAZN	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_KAZN:range=chr1:14925494-154411315'pad=0,hg19_refFlat_KAZN:range=chr1:14925494-154411315'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr1:15428310-15444544"	NA	inter
CUST_17667_PI429285431	1.1752912	A	2.1788487	A	0.498768583333931	0	lncRNA	19395-1_{1..366}	lnc-WDR11-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR11-2:3	chr10	122713957	122714322	+	lnc-WDR11-2	lnc-WDR11-2:3	XLOC_008645	linc-TACC2-5	NA	NA	NA	inter
CUST_2979_PI429285431	8.9944935	P	9.030316	P	0.975475470427712	0	lncRNA	2958-1_{1..577}	"transcript_id ""ENST00000520842.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520842.1"" | genecode_v17"	chr8	  2554056	  2554632	-	ENSG00000254319.1	ENST00000520842.1	RP11-134O21.1	RP11-134O21.1-002	NA	NA	NA	inter
CUST_2270_PI429285431	1.8281778	A	1.3565618	A	1.38666183428305	0	lncRNA	2262-1_{1..414}	"transcript_id ""ENST00000505796.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505796.1"" | genecode_v17"	chr5	 96559075	 96559488	-	ENSG00000251054.1	ENST00000505796.1	CTD-2215E18.3	CTD-2215E18.3-001	NA	NA	NA	inter
LNCA_21_P0009327	1.7338376	A	1.7549821	A	0.985450629490173	0	lncRNA	TCONS_00025662	NA	NA	NA	NA	XLOC_012488	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012488), lincRNA [TCONS_00025662]"	chr17:42723498-42723439	hs|17q21.31	Agilent_HUMAN_G3V2	TCONS_00025662	TCONS_00025662	chr17	 42723439	 42723498	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42784_PI429285431	1.121342	A	0.912852	A	1.15547816696749	0	lncRNA	45774-1_{1..78}	ENST00000517176 ncrna:snoRNA chromosome:GRCh37:9:129189172:129189249:1 gene:ENSG00000252985 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517176 ncrna:snoRNA chromosome:GRCh37:9:129189172:129189249:1 gene:ENSG00000252985 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	129189172	129189249	+	ENSG00000252985	ENST00000517176	NA	NA	FAM125B	NA	chr9:129179172-129199249	inner
CUST_39834_PI429285431	0.904395	A	0.8946966	A	1.00674506478921	0	lncRNA	40740-1_{1..3000}	n406441|NR_022012|lncRNA|Homosapiens||RefGeneNoncode|NR_022012||17.5057000|-0.3286454	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406441|NR_022012|lncRNA|Homosapiens||RefGeneNoncode|NR_022012||17.5057000|-0.3286454	chr3	130064358	130067357	+	NA	NA	NA	NA	COL6A5	NA	chr3:130064359-130203688	inner
CUST_27935_PI429285431	1.4372356	A	1.3336682	A	1.0744269517491	0	lncRNA	29536-2_{3001..4394}	n325179|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331943|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331943|7.0920000|-0.2944677	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325179|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331943|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331943|7.0920000|-0.2944677	chr2	111186622	111188015	-	NA	NA	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60"	NA	inter
CUST_32145_PI429285431	1.7118173	A	2.3434134	A	0.64546192483877	0	lncRNA	33845-1_{1..2363}	n338712|AX747015|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1132|NULL|3.2261500|-0.1716230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338712|AX747015|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1132|NULL|3.2261500|-0.1716230	chr2	 26785902	 26788264	+	NA	NA	NA	NA	OTOF	NA	chr2:26775902-26781566	inner
CUST_37796_PI429285431	2.4244432	A	3.0285265	A	0.657889275443614	0	lncRNA	38888-1_{1..437}	n346302|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1852|NULL|-1.2935100|-0.2272271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346302|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1852|NULL|-1.2935100|-0.2272271	chr16	 52646146	 52646582	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37286_PI429285431	0.9065635	A	0.8947012	A	1.00825621590926	0	lncRNA	38395-1_{1..1307}	n345729|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1278|NULL|-1.6602300|-0.3306896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345729|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1278|NULL|-1.6602300|-0.3306896	chr5	147601240	147602546	+	NA	NA	NA	NA	SPINK6	NA	chr5:147591240-147594700	inter
CUST_27227_PI429285431	0.9093157	A	0.90688	A	1.00168972456613	0	lncRNA	28772-1_{1..1252}	n324363|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042472|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042472|1.4591100|-0.3592098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324363|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042472|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042472|1.4591100|-0.3592098	chr6	140430264	140431515	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48863_PI429285431	5.741186	P	5.8335648	P	0.93797488558545	0	lncRNA	52699-1_{1..268}	hg19_lincRNAsTranscripts_TCONS_l2_00019174 range=chr3:12818116-12833839 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019174 range=chr3:12818116-12833839 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 12818116	 12818383	-	NA	NA	NA	NA	CAND2	NA	chr3:12828834-12843839	inter
CUST_37281_PI429285431	9.268325	P	9.298046	P	0.979609724097332	0	lncRNA	38390-1_{1..323}	n345723|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1272|NULL|-1.2733600|-0.1180957	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345723|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1272|NULL|-1.2733600|-0.1180957	chr2	112186898	112187220	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35542_PI429285431	0.92087126	A	0.920705	A	1.00011524929093	0	lncRNA	36957-1_{1..1772}	n342665|AL050132|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5167|NULL|-1.2929100|-0.3856220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342665|AL050132|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5167|NULL|-1.2929100|-0.3856220	chr5	 88185151	 88186922	+	NA	NA	NA	NA	MEF2C	NA	chr5:88175151-88199922	inner
CUST_11906_PI429285431	0.92369044	A	0.9084973	A	1.01058672917008	0	lncRNA	13488-1_{1..255}	lnc-DCUN1D1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCUN1D1-1:1	chr3	182508253	182508507	-	lnc-DCUN1D1-1	lnc-DCUN1D1-1:1	XLOC_003350	linc-DNAJC19-1	ATP11B	NA	chr3:182511291-182518355	inter
CUST_12052_PI429285431	4.9823112	P	5.1801777	P	0.871838911547746	0	lncRNA	13638-1_{1..282}	lnc-ZBTB17-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZBTB17-2:1	chr1	 16126600	 16126881	-	lnc-ZBTB17-2	lnc-ZBTB17-2:1	XLOC_000721	linc-AGMAT-3	UQCRHL	NA	chr1:16133657-16134194	inter
CUST_38787_PI429285431	4.107489	P	2.531642	A	2.98110460616245	0	lncRNA	39780-2_{3001..3518}	n384454|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hay.2||-1.1487400|-0.3979733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384454|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hay.2||-1.1487400|-0.3979733	chr4	 56297073	 56297590	-	NA	NA	NA	NA	CLOCK	NA	chr4:56298660-56307591	inner
CUST_5412_PI429285431	6.801197	P	7.27056	P	0.722283440607248	0	lncRNA	5346-1_{1..454}	"transcript_id ""ENST00000576762.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000576762.1"" | genecode_v17"	chr16	  3231233	  3231686	-	ENSG00000262521.1	ENST00000576762.1	AJ003147.8	AJ003147.8-001	NA	NA	NA	inter
CUST_39799_PI429285431	5.777031	P	5.618449	P	1.11618951537655	0	lncRNA	40709-1_{1..3000}	n406195|NR_003654|lncRNA|Homosapiens||RefGeneNoncode|NR_003654||1.6331000|-0.2757100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406195|NR_003654|lncRNA|Homosapiens||RefGeneNoncode|NR_003654||1.6331000|-0.2757100	chr15	 85174690	 85177689	+	NA	NA	NA	NA	WDR73	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.91;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20chr15:85185999-85195694"	NA	inter
CUST_49830_PI429285431	1.0706449	A	0.9132385	A	1.11528034339409	0	lncRNA	53588-1_{1..647}	hg19_lincRNAsTranscripts_TCONS_l2_00025973 range=chr7:65162819-65173519 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025973 range=chr7:65162819-65173519 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 65162819	 65163465	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47941_PI429285431	0.8967329	A	0.89105046	A	1.00394653440279	0	lncRNA	51833-1_{1..1718}	"gi|410172412|ref|XR_171769.1| PREDICTED: Homo sapiens uncharacterized LOC100509484 (LOC100509484), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410172412|ref|XR_171769.1| PREDICTED: Homo sapiens uncharacterized LOC100509484 (LOC100509484), misc_RNA"	NA	NA	NA	NA	NA	XR_171769.1	NA	NA	NA	NA	NA	Unknown
CUST_9244_PI429285431	10.136988	P	9.871172	P	1.20231589685437	0	lncRNA	10754-1_{1..2652}	lnc-RALGAPB-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RALGAPB-1:2	chr20	 37079176	 37081827	+	lnc-RALGAPB-1	lnc-RALGAPB-1:2	ENSG00000174365	SNHG11	NA	NA	NA	inter
CUST_16025_PI429285431	0.91723835	A	0.9034543	A	1.00960016415026	0	lncRNA	17722-1_{1..282}	lnc-NLGN1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NLGN1-1:3	chr3	174176304	174176585	+	lnc-NLGN1-1	lnc-NLGN1-1:3	XLOC_002925	linc-NAALADL2	NA	NA	NA	inter
CUST_11539_PI429285431	0.91379434	A	0.92288893	A	0.993715938408025	0	lncRNA	13110-1_{1..498}	lnc-ALCAM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALCAM-1:1	chr3	104736532	104737029	+	lnc-ALCAM-1	lnc-ALCAM-1:1	XLOC_002745	linc-ALCAM-1	NA	NA	NA	inter
CUST_26762_PI429285431	0.9166461	A	0.9048238	A	1.00822826149866	0	lncRNA	28261-1_{1..639}	n323813|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058182|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058182|-0.9868150|-0.3293166	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323813|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058182|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058182|-0.9868150|-0.3293166	chrX	125071425	125072063	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16462_PI429285431	3.926897	P	4.098599	P	0.887794699304447	0	lncRNA	18160-1_{1..778}	lnc-RASGRP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASGRP1-1:1	chr15	 39049397	 39050174	-	lnc-RASGRP1-1	lnc-RASGRP1-1:1	XLOC_011433	linc-RASGRP1-1	NA	NA	NA	inter
CUST_41418_PI429285431	0.9027516	A	0.89601237	A	1.00468220570239	0	lncRNA	42562-1_{1..75}	ENST00000579348 ncrna:miRNA chromosome:GRCh37:4:49585042:49585116:-1 gene:ENSG00000265591 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579348 ncrna:miRNA chromosome:GRCh37:4:49585042:49585116:-1 gene:ENSG00000265591 gene_biotype:miRNA transcript_biotype:miRNA	chr4	 49585042	 49585116	-	ENSG00000265591	ENST00000579348	NA	NA	NA	NA	NA	inter
CUST_25170_PI429285431	0.9539684	A	0.90087646	A	1.03748605131996	0	lncRNA	26703-4_{9001..12000}	lnc-ZNF862-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:2	chr7	149539900	149542899	+	lnc-ZNF862-1	lnc-ZNF862-1:2	ENSG00000197558.7	SSPO	ZNF862	NA	chr7:149535509-149541054	inner
CUST_20183_PI429285431	1.6980909	A	1.1346695	A	1.47776964556783	0	lncRNA	21827-1_{1..595}	lnc-DHX36-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHX36-1:2	chr3	153838861	153839455	-	lnc-DHX36-1	lnc-DHX36-1:2	ENSG00000243069.1	ARHGEF26-AS1	ARHGEF26	NA	chr3:153839149-153849121	inner
LNCA_21_P0007911	0.92173076	A	0.90801436	A	1.00955282368823	0	lncRNA	BC036310	NA	BC036310	NA	Hs.342412	XLOC_010450	NA	NA	THC2604937	NA	"BROAD Institute lincRNA (XLOC_010450), lincRNA [TCONS_00021500]"	chr13:80492097-80492156	hs|13q31.1	Agilent_HUMAN_G3V2	BC036310	BC036310	chr13	 80492097	 80492156	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8881_PI429285431	1.7000246	A	1.4642861	A	1.17750933727761	0	lncRNA	10418-1_{1..488}	lnc-ST8SIA4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ST8SIA4-3:1	chr5	 99870865	 99871352	-	lnc-ST8SIA4-3	lnc-ST8SIA4-3:1	ENSG00000247877	CTD-2001C12.1	FAM174A	NA	chr5:99871124-99880966	inter
CUST_28842_PI429285431	0.8969954	A	0.9006133	A	0.997495404561572	0	lncRNA	30550-1_{1..865}	n326257|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088523|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088523|-0.6595030|-0.2647727	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326257|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088523|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088523|-0.6595030|-0.2647727	chr1	207768422	207769286	-	NA	NA	NA	NA	CR1	NA	chr1:207758422-207815110	inner
CUST_6512_PI429285431	0.90353125	A	1.1434747	A	0.846778503289594	0	lncRNA	6454-1_{1..554}	"transcript_id ""ENST00000592714.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592714.1"" | genecode_v17"	chr19	 38327458	 38328011	-	ENSG00000225868.2	ENST00000592714.1	AC016582.2	AC016582.2-004	NA	NA	NA	inter
CUST_8842_PI429285431	0.91415143	A	1.5211042	A	0.656582057111159	0	lncRNA	10381-1_{1..2927}	lnc-SHPRH-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SHPRH-2:1	chr6	147525549	147528475	-	lnc-SHPRH-2	lnc-SHPRH-2:1	ENSG00000233452	RP11-497D6.4	STXBP5	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_STXBP5:range=chr6:147525669-1477058915'pad=0,hg19_refFlat_STXBP5:range=chr6:147525669-1477058915'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-24.51;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20chr6:147525494-147535750"	NA	inner
CUST_24216_PI429285431	0.9266453	A	0.91760886	A	1.00628324016391	0	lncRNA	25767-1_{1..966}	lnc-AC016251.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC016251.1-1:4	chr15	 96870428	 96871393	-	lnc-AC016251.1-1	lnc-AC016251.1-1:4	ENSG00000247809.3	RP11-327J17.3	NR2F2	NA	chr15:96869157-96880577	inner
CUST_6768_PI429285431	6.284175	P	7.0035834	P	0.607346443189474	0	lncRNA	6715-1_{1..648}	"transcript_id ""ENST00000456342.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456342.1"" | genecode_v17"	chr21	 17443553	 17444200	+	ENSG00000215386.6	ENST00000456342.1	LINC00478	LINC00478-002	NA	NA	NA	inter
CUST_14669_PI429285431	4.213765	P	4.850826	P	0.643021552917345	0	lncRNA	16338-1_{1..643}	lnc-OPN4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OPN4-1:1	chr10	 88282266	 88282908	+	lnc-OPN4-1	lnc-OPN4-1:1	XLOC_008542	linc-OPN4-1	WAPAL	NA	chr10:88272266-88281541	inter
CUST_40596_PI429285431	9.223627	P	8.760664	P	1.37836980223606	0	lncRNA	41342-1_{1..626}	n410068|NR_036506|lncRNA|Homosapiens||RefGeneNoncode|NR_036506||3.3459200|-0.1069335	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410068|NR_036506|lncRNA|Homosapiens||RefGeneNoncode|NR_036506||3.3459200|-0.1069335	chr10	 15196720	 15197345	-	NA	NA	NA	NA	NMT2	NA	chr10:15186720-15207346	inner
CUST_15494_PI429285431	2.1181884	A	2.2093644	A	0.938757217671951	0	lncRNA	17183-1_{1..1106}	lnc-RP11-831A10.1.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-831A10.1.1-1:3	chr11	119865303	119866408	-	lnc-RP11-831A10.1.1-1	lnc-RP11-831A10.1.1-1:3	XLOC_009578	linc-PVRL1	NA	NA	NA	inter
CUST_10417_PI429285431	0.9165437	A	1.4462548	A	0.692693432180342	0	lncRNA	11944-1_{1..1249}	lnc-SYK-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYK-6:1	chr9	 94189112	 94190360	+	lnc-SYK-6	lnc-SYK-6:1	XLOC_007456	linc-CENPP-6	NFIL3	NA	chr9:94179112-94186144	inter
CUST_6047_PI429285431	1.4925689	A	1.6186895	A	0.916292045368905	0	lncRNA	5973-1_{1..779}	"transcript_id ""ENST00000579097.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579097.1"" | genecode_v17"	chr18	  2034680	  2035458	-	ENSG00000263745.1	ENST00000579097.1	RP11-161I6.2	RP11-161I6.2-003	NA	NA	NA	inter
CUST_44241_PI429285431	0.91029084	A	0.90198255	A	1.00577548194548	0	lncRNA	48890-1_{1..3000}	"gi|242247281|ref|NR_027898.1| Homo sapiens collagen, type VI, alpha 4 pseudogene 2 (COL6A4P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|242247281|ref|NR_027898.1| Homo sapiens collagen, type VI, alpha 4 pseudogene 2 (COL6A4P2), non-coding RNA"	Chr3	129931663	129934662	+	646300	NR_027898.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70"	NA	inter
LNCA_21_P0011810	0.9299606	A	0.9184047	A	1.00804210489284	0	lncRNA	TCONS_l2_00013766	NA	NA	NA	NA	XLOC_l2_007419	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007419), lincRNA [TCONS_l2_00013766]"	chr2:89087907-89087966	hs|2p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00013766	TCONS_l2_00013766	chr2	 89087907	 89087966	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5981_PI429285431	1.8828679	A	1.7696209	A	1.08165993576683	0	lncRNA	5909-1_{1..695}	"transcript_id ""ENST00000581153.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581153.1"" | genecode_v17"	chr17	 75269866	 75270560	-	ENSG00000263718.2	ENST00000581153.1	RP11-285E9.6	RP11-285E9.6-001	9-Sep	NA	chr17:75277492-75287979	inner
CUST_7310_PI429285431	1.5324016	A	2.741439	A	0.432557131663862	0	lncRNA	8477-1_{1..279}	"transcript_id ""ENST00000461817.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000461817.2"" | genecode_v17"	chr15	 23263708	 23263986	+	ENSG00000244736.2	ENST00000461817.2	RN7SL495P	RN7SL495P-201	NA	NA	NA	inter
CUST_1564_PI429285431	1.0766397	A	0.9053183	A	1.12608942558636	0	lncRNA	1552-1_{1..542}	"transcript_id ""ENST00000439009.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439009.1"" | genecode_v17"	chr3	177159752	177160293	+	ENSG00000228221.1	ENST00000439009.1	LINC00578	LINC00578-002	NA	NA	NA	inter
CUST_26006_PI429285431	0.95707124	A	0.9587832	A	0.998814063531902	0	lncRNA	27525-1_{1..1966}	lnc-HNRNPH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HNRNPH1-1:1	chr5	179030608	179032573	-	lnc-HNRNPH1-1	lnc-HNRNPH1-1:1	ENSG00000244945.1	RP11-1379J22.2	RUFY1	NA	chr5:179020608-179037019	inner
CUST_40797_PI429285431	5.0701528	P	5.434461	P	0.77684129603434	0	lncRNA	41505-1_{1..2697}	n410555|NR_037772_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037772_2||4.6742100|-0.1351218	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n410555|NR_037772_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037772_2||4.6742100|-0.1351218	chr17	 43697709	 43700405	+	NA	NA	NA	NA	CRHR1	NA	chr17:43697710-43913194	inner
LNCA_21_P0011103	1.6089518	A	1.299311	A	1.23939907783773	0	lncRNA	TCONS_l2_00006314	NA	NA	NA	NA	XLOC_l2_003419	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003419), lincRNA [TCONS_l2_00006314]"	chr12:70618992-70618755	hs|12q15	Agilent_HUMAN_G3V2	TCONS_l2_00006314	TCONS_l2_00006314	chr12	 70618755	 70618992	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007815	3.5306382	P	3.7469451	P	0.860766060791851	0	lncRNA	TCONS_00021025	NA	NA	NA	NA	XLOC_009625	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009625), lincRNA [TCONS_00021025]"	chr12:4673646-4675672	hs|12p13.32	Agilent_HUMAN_G3V2	TCONS_00021025	TCONS_00021025	chr12	  4673646	  4675672	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006634	0.9703162	A	0.9263773	A	1.0309246568783	0	lncRNA	ENST00000437289	NA	NA	NA	NA	XLOC_008342	NA	ENST00000437289	NA	NA	"BROAD Institute lincRNA (XLOC_008342), lincRNA [TCONS_00017761]"	chr10:2544138-2579700	hs|10p15.3	Agilent_HUMAN_G3V2	ENST00000437289	ENST00000437289	chr10	  2544138	  2579700	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22585_PI429285431	7.0109897	P	7.2480364	P	0.848480435972281	0	lncRNA	24170-1_{1..3000}	lnc-SP6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SP6-2:2	chr17	 45969220	 45972219	-	lnc-SP6-2	lnc-SP6-2:2	ENSG00000264920.1	RP11-6N17.4	SP2	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.30;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10chr17:45973516-45983158"	NA	inter
CUST_4968_PI429285431	0.9248016	A	0.9228064	A	1.00138392399486	0	lncRNA	4912-1_{1..789}	"transcript_id ""ENST00000555496.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555496.1"" | genecode_v17"	chr14	 97059105	 97059893	+	ENSG00000258702.1	ENST00000555496.1	RP11-433J8.1	RP11-433J8.1-001	NA	NA	NA	inter
CUST_9575_PI429285431	4.9261394	P	5.2765074	P	0.784383993149036	0	lncRNA	11091-1_{1..678}	lnc-PIWIL4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIWIL4-4:1	chr11	 94475637	 94476314	+	lnc-PIWIL4-4	lnc-PIWIL4-4:1	XLOC_009254	linc-AMOTL1-1	NA	NA	NA	inter
CUST_29195_PI429285431	0.91583484	A	0.90772116	A	1.00563981864868	0	lncRNA	30941-1_{1..497}	n326711|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000004930|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000004930|0.0128703|-0.1952082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326711|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000004930|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000004930|0.0128703|-0.1952082	chr1	  8191318	  8191814	+	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00"	NA	inter
CUST_52077_PI429285431	4.1546383	P	4.7987137	P	0.639902762619808	0	lncRNA	55606-1_{1..318}	hg19_lincRNAsTranscripts_TCONS_l2_00017857 range=chr22:16915159-16940793 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017857 range=chr22:16915159-16940793 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 16915159	 16915476	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9037_PI429285431	1.4366083	A	1.728142	A	0.817033025383402	0	lncRNA	10563-1_{1..557}	lnc-CYB5R2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYB5R2-3:2	chr11	  7486984	  7487540	-	lnc-CYB5R2-3	lnc-CYB5R2-3:2	ENSG00000251364	ENSG00000251364.2	SYT9	NA	chr11:7476984-7490276	inner
CUST_21436_PI429285431	1.054152	A	1.1990492	A	0.904443821889084	0	lncRNA	23055-1_{1..259}	lnc-AC006156.2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AC006156.2-4:1	chrY	  9172360	  9172618	-	lnc-AC006156.2-4	lnc-AC006156.2-4:1	ENSG00000232808.1	TTTY20	TSPY4	NA	chrY:9175119-9177887	inter
CUST_34280_PI429285431	1.7906713	A	1.5296658	A	1.19831358967298	0	lncRNA	35779-1_{1..744}	n341140|AF143331|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3606|NULL|-1.1230600|-0.2236148	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341140|AF143331|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3606|NULL|-1.1230600|-0.2236148	chr11	121061480	121062223	+	NA	NA	NA	NA	TECTA	NA	chr11:121051480-121061515	inner
CUST_38887_PI429285431	2.787437	A	0.92223775	A	3.64318245800759	0	lncRNA	39874-1_{1..3000}	n384826|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003nbc.1||0.0213217|-0.3118503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384826|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003nbc.1||0.0213217|-0.3118503	chr6	 13786976	 13789975	-	NA	NA	NA	NA	CCDC90A	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-60.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10chr6:13786781-13800645"	NA	inner
CUST_7227_PI429285431	1.8267052	A	1.8527802	A	0.982088539043655	0	lncRNA	7748-1_{1..271}	"transcript_id ""ENST00000516655.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516655.1"" | genecode_v17"	chr5	178046729	178046999	-	ENSG00000252464.1	ENST00000516655.1	RN7SKP70	RN7SKP70-201	CLK4	NA	chr5:178036729-178054054	inner
CUST_23608_PI429285431	1.1794665	A	1.2455562	A	0.955223543223693	0	lncRNA	25175-1_{1..571}	lnc-KRT80-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KRT80-1:1	chr12	 52604361	 52604931	-	lnc-KRT80-1	lnc-KRT80-1:1	ENSG00000257137.1	RP11-845M18.3	LOC283403	NA	chr12:52599365-52604639	inner
CUST_14937_PI429285431	0.91446304	A	0.9084078	A	1.00420599299827	0	lncRNA	16601-1_{1..924}	lnc-CD180-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD180-7:1	chr5	 67485144	 67486067	-	lnc-CD180-7	lnc-CD180-7:1	XLOC_004856	linc-CD180-4	NA	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-28.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10"	NA	inter
CUST_35527_PI429285431	4.748851	P	5.009105	P	0.834940907305616	0	lncRNA	36937-1_{1..1027}	n342638|BC032891|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5140|NULL|-0.9866290|-0.2466276	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342638|BC032891|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5140|NULL|-0.9866290|-0.2466276	chr5	  8839876	  8840902	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32641_PI429285431	2.596945	A	2.0919118	A	1.41915601413308	0	lncRNA	34298-1_{1..1426}	n339264|AF052160|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1696|NULL|-1.2576100|-0.4223608	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339264|AF052160|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1696|NULL|-1.2576100|-0.4223608	chr3	 16349798	 16351223	+	NA	NA	NA	NA	RFTN1	NA	chr3:16357352-16361028	inter
LNCA_21_P0005869	7.369734	P	7.65464	P	0.820795086657495	0	lncRNA	TCONS_00015084	NA	NA	NA	NA	XLOC_007149	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007149), lincRNA [TCONS_00015084]"	chr8:91566582-91546799	hs|8q21.3	Agilent_HUMAN_G3V2	TCONS_00015084	TCONS_00015084	chr8	 91546799	 91566582	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002232	1.023896	A	0.95501107	A	1.04890566305486	0	lncRNA	TCONS_00003718	NA	NA	NA	NA	XLOC_001506	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001506), lincRNA [TCONS_00003718]"	chr2:66311810-66312403	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00003718	TCONS_00003718	chr2	 66311810	 66312403	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30736_PI429285431	7.9447384	P	7.9589276	P	0.990213003471407	0	lncRNA	32519-1_{1..682}	n336301|Y18282|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326077|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326077|2.3076000|-0.1247747	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336301|Y18282|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326077|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326077|2.3076000|-0.1247747	chr1	 11104839	 11105520	-	NA	NA	NA	NA	MASP2	NA	chr1:11094839-11107296	inner
CUST_10221_PI429285431	2.4503355	A	2.9819894	A	0.691761246906315	0	lncRNA	11746-1_{1..518}	lnc-ZNF664-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF664-2:5	chr12	124599655	124600172	+	lnc-ZNF664-2	lnc-ZNF664-2:5	XLOC_009926	linc-FAM101A-3	ZNF664-FAM101A	NA	chr12:124589655-124609680	inner
CUST_23542_PI429285431	0.92342144	A	0.98539346	A	0.957953796845732	0	lncRNA	25109-1_{1..2392}	lnc-TAF4B-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TAF4B-4:4	chr18	 24514244	 24516635	+	lnc-TAF4B-4	lnc-TAF4B-4:4	ENSG00000260372.2	CHST9-AS1	CHST9	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40chr18:24504244-24525910"	NA	inner
CUST_8192_PI429285431	1.0693958	A	0.9802752	A	1.06372158944055	0	lncRNA	9790-2_{3001..3608}	lnc-HES5-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HES5-1:4	chr1	  2485431	  2486038	-	lnc-HES5-1	lnc-HES5-1:4	ENSG00000238164	RP3-395M20.8	TNFRSF14	NA	chr1:2487805-2495268	inter
CUST_45694_PI429285431	6.19201	P	7.0484047	P	0.552331112113947	0	lncRNA	50066-1_{1..1699}	"gi|219555705|ref|NR_026559.1| Homo sapiens leucine rich repeat containing 27 (LRRC27), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219555705|ref|NR_026559.1| Homo sapiens leucine rich repeat containing 27 (LRRC27), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NR_026559.1	NA	NA	NA	NA	NA	Unknown
CUST_14178_PI429285431	3.4791071	P	3.7763557	P	0.813802941403349	0	lncRNA	15830-1_{1..482}	lnc-ZNF730-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF730-1:1	chr19	 23294625	 23295106	+	lnc-ZNF730-1	lnc-ZNF730-1:1	XLOC_013018	linc-ZNF726-5	ZNF730	NA	chr19:23284625-23304867	inter
CUST_18298_PI429285431	3.0999265	P	3.4676628	P	0.774997574326835	0	lncRNA	20028-1_{1..551}	lnc-RP11-973F15.1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-973F15.1.1-4:1	chr8	123501864	123502414	-	lnc-RP11-973F15.1.1-4	lnc-RP11-973F15.1.1-4:1	ENSG00000255325	RP11-96B2.1	NA	NA	NA	inter
CUST_47667_PI429285431	7.7123055	P	8.388872	P	0.625652507444279	0	lncRNA	51649-1_{1..1935}	"gi|195232768|ref|NR_024048.1| Homo sapiens tafazzin (TAZ), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|195232768|ref|NR_024048.1| Homo sapiens tafazzin (TAZ), transcript variant 5, non-coding RNA"	ChrX	153639877	153641811	+	6901	NR_024048.1	NA	NA	NA	NA	NA	inter
CUST_51013_PI429285431	0.92453235	A	0.9149728	A	1.00664817679714	0	lncRNA	54659-1_{1..956}	hg19_lincRNAsTranscripts_TCONS_l2_00007211 range=chr13:52797376-52882404 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007211 range=chr13:52797376-52882404 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 52797376	 52798331	-	NA	NA	NA	NA	LOC100652836	NA	chr13:52863953-52892404	inter
CUST_51827_PI429285431	1.552475	A	1.2883663	A	1.20089390554626	0	lncRNA	55380-1_{1..519}	hg19_lincRNAsTranscripts_TCONS_l2_00013070 range=chr19:36803582-36812950 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013070 range=chr19:36803582-36812950 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 36803582	 36804100	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6121_PI429285431	1.1795381	A	1.2898538	A	0.926385321990955	0	lncRNA	6047-1_{1..472}	"transcript_id ""ENST00000577354.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577354.1"" | genecode_v17"	chr18	 22305745	 22306216	+	ENSG00000266573.1	ENST00000577354.1	RP11-449D8.5	RP11-449D8.5-001	NA	NA	NA	inter
LNCA_21_P0008926	2.5899935	A	1.7933576	A	1.73704592820534	0	lncRNA	THC2772690	NA	NA	NA	NA	XLOC_011704	NA	NA	THC2772690	NA	"BROAD Institute lincRNA (XLOC_011704), lincRNA [TCONS_00024378]"	chr16:047007858-047007917	hs|16q12.1	Agilent_HUMAN_G3V2	THC2772690	THC2772690	chr16	 47007858	 47007917	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50282_PI429285431	8.066054	P	8.562871	P	0.708668584281649	0	lncRNA	54005-1_{1..952}	hg19_lincRNAsTranscripts_TCONS_l2_00029403 range=chr9:75477340-75478879 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029403 range=chr9:75477340-75478879 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 75477340	 75478291	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15241_PI429285431	0.9080087	A	0.90500915	A	1.00208129251416	0	lncRNA	16912-1_{1..748}	lnc-PION-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PION-1:1	chr7	 77163526	 77164273	-	lnc-PION-1	lnc-PION-1:1	XLOC_006505	linc-PION-1	PTPN12	NA	chr7:77166773-77173609	inter
CUST_9645_PI429285431	0.9248683	A	0.91159815	A	1.00924060019931	0	lncRNA	11163-1_{1..482}	lnc-TET2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TET2-1:1	chr4	106280121	106280602	+	lnc-TET2-1	lnc-TET2-1:1	XLOC_003634	linc-ARHGEF38-2	PPA2	NA	chr4:106290234-106290565	inter
CUST_27491_PI429285431	0.9127791	A	1.1548921	A	0.845506059987895	0	lncRNA	29062-1_{1..592}	n324668|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000321691|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000321691|-0.2449720|-0.2708019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324668|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000321691|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000321691|-0.2449720|-0.2708019	chr22	 37817584	 37818175	+	NA	NA	NA	NA	ELFN2	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60chr22:37807584-37823505"	NA	inner
CUST_49263_PI429285431	0.9150257	A	0.9093334	A	1.00395339582975	0	lncRNA	53082-1_{1..505}	hg19_lincRNAsTranscripts_TCONS_l2_00022498 range=chr5:121492827-121518246 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022498 range=chr5:121492827-121518246 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	121492827	121493331	+	NA	NA	NA	NA	LOC100505841	NA	chr5:121495871-121518358	inner
CUST_47705_PI429285431	6.408019	P	5.8349915	P	1.48764211892511	0	lncRNA	51671-1_{1..3000}	"gi|385137070|ref|NR_047608.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 38, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137070|ref|NR_047608.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 38, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047608.1	NA	NA	NA	NA	NA	inter
CUST_30721_PI429285431	1.2367864	A	0.91275537	A	1.25182338302868	0	lncRNA	32503-1_{1..651}	n336267|Y10206|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325567|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325567|-1.1121200|-0.4606355	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336267|Y10206|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325567|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325567|-1.1121200|-0.4606355	chr6	 25618019	 25618669	-	NA	NA	NA	NA	LRRC16A	NA	chr6:25608019-25620758	inner
CUST_49697_PI429285431	5.0182333	P	5.2860675	P	0.830565470348374	0	lncRNA	53474-1_{1..1096}	hg19_lincRNAsTranscripts_TCONS_l2_00027052 range=chr7:12536055-12581536 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027052 range=chr7:12536055-12581536 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 12536055	 12537150	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34687_PI429285431	0.9132528	A	0.90726644	A	1.00415804935416	0	lncRNA	36139-1_{1..2935}	n341592|AK055169|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4063|NULL|-0.8365960|-0.3106247	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341592|AK055169|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4063|NULL|-0.8365960|-0.3106247	chr8	119573405	119576339	-	NA	NA	NA	NA	SAMD12	NA	chr8:119563405-119586339	inner
CUST_25475_PI429285431	4.0565634	P	4.530125	P	0.72018447258762	0	lncRNA	27005-1_{1..553}	lnc-FLRT1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FLRT1-2:2	chr11	 63870666	 63871218	+	lnc-FLRT1-2	lnc-FLRT1-2:2	ENSG00000256824.1	RP11-21A7A.2	MACROD1	NA	chr11:63860666-63880985	inner
CUST_18046_PI429285431	4.3170853	P	5.048312	P	0.602391492389756	0	lncRNA	19782-1_{1..608}	lnc-DUSP4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DUSP4-4:1	chr8	 29387761	 29388368	-	lnc-DUSP4-4	lnc-DUSP4-4:1	XLOC_007038	linc-DUSP4-6	NA	NA	NA	inter
CUST_35561_PI429285431	1.0920492	A	1.3318007	A	0.846891174327105	0	lncRNA	36975-1_{1..2558}	n342691|BC030525|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5193|NULL|0.2120240|-0.3965273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342691|BC030525|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5193|NULL|0.2120240|-0.3965273	chr5	131584599	131587156	-	NA	NA	NA	NA	PDLIM4	NA	chr5:131593351-131609147	inner
CUST_883_PI429285431	0.910342	A	0.90030587	A	1.0069807679708	0	lncRNA	873-1_{1..813}	"transcript_id ""ENST00000454367.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454367.1"" | genecode_v17"	chr2	 58503012	 58503824	+	ENSG00000225226.1	ENST00000454367.1	AC007250.4	AC007250.4-001	NA	NA	NA	inter
CUST_47094_PI429285431	4.28153	P	3.738365	P	1.45716575937399	0	lncRNA	51177-1_{1..3000}	"gi|365777419|ref|NR_045692.1| Homo sapiens chromosome 19 open reading frame 12 (C19orf12), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|365777419|ref|NR_045692.1| Homo sapiens chromosome 19 open reading frame 12 (C19orf12), transcript variant 7, non-coding RNA"	Chr19	 30189793	 30192792	-	83636	NR_045692.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
CUST_24671_PI429285431	4.658446	P	4.901492	P	0.844959442645253	0	lncRNA	26218-1_{1..353}	lnc-LGSN-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LGSN-1:2	chr6	 65443266	 65443618	-	lnc-LGSN-1	lnc-LGSN-1:2	ENSG00000243828.1	RP11-69I22.3	EYS	NA	chr6:65433266-65453438	inner
CUST_50934_PI429285431	4.484351	P	5.0885873	P	0.657819508986351	0	lncRNA	54575-1_{1..973}	hg19_lincRNAsTranscripts_TCONS_l2_00005679 range=chr12:52487309-52502030 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005679 range=chr12:52487309-52502030 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 52487309	 52488281	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21530_PI429285431	0.9061316	A	1.4712981	A	0.675877409673071	0	lncRNA	23148-1_{1..227}	lnc-AL591684.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL591684.1-1:1	chr10	 48358501	 48358727	+	lnc-AL591684.1-1	lnc-AL591684.1-1:1	ENSG00000228865.1	RP11-463P17.3	ZNF488	NA	chr10:48355089-48368600	inner
CUST_30895_PI429285431	3.9926472	P	4.294067	P	0.811453427316677	0	lncRNA	32683-1_{1..218}	n336911|AY927614|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332776|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332776|-0.9362970|-0.1248571	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336911|AY927614|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332776|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332776|-0.9362970|-0.1248571	chrX	 53221898	 53222115	+	NA	NA	NA	NA	KDM5C	"hg19_refFlat_KDM5C:range=chrX:53222149-532540715'pad=0,hg19_refFlat_KDM5C:range=chrX:53222149-532540715'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_KDM5C:range=chrX:53221926-532540715'pad=0,hg19_refFlat_KDM5C:range=chrX:53221926-532540715'pad=0 3'pad=0 strand=- repeatMasking=none,-102.10chrX:53220503-53233883"	NA	inner
LNCA_21_P0009599	0.95118105	A	0.92001283	A	1.02183922346697	0	lncRNA	TCONS_00026597	NA	NA	NA	NA	XLOC_012622	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012622), lincRNA [TCONS_00026597]"	chr18:8974744-8974803	hs|18p11.22	Agilent_HUMAN_G3V2	TCONS_00026597	TCONS_00026597	chr18	  8974744	  8974803	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49651_PI429285431	7.1193695	P	6.6416683	P	1.39252304204243	0	lncRNA	53434-1_{1..1726}	hg19_lincRNAsTranscripts_TCONS_l2_00026651 range=chr7:65887913-66057375 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026651 range=chr7:65887913-66057375 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 65887913	 65889638	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42456_PI429285431	2.5583816	A	3.369257	P	0.570035866017479	0	lncRNA	45188-1_{1..82}	ENST00000362842 ncrna:snoRNA chromosome:GRCh37:15:25417782:25417863:1 gene:ENSG00000199712 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362842 ncrna:snoRNA chromosome:GRCh37:15:25417782:25417863:1 gene:ENSG00000199712 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 25417782	 25417863	+	ENSG00000199712	ENST00000362842	NA	NA	SNRPN	NA	chr15:25407782-25427863	inter
CUST_50402_PI429285431	0.89876986	A	0.89852685	A	1.00016845588345	0	lncRNA	54106-1_{1..602}	hg19_lincRNAsTranscripts_TCONS_l2_00030654 range=chrX:2527389-2534212 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030654 range=chrX:2527389-2534212 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	  2527389	  2527990	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2813_PI429285431	10.525747	P	10.316181	P	1.15634027450139	0	lncRNA	2796-1_{1..953}	"transcript_id ""ENST00000585030.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585030.1"" | genecode_v17"	chr7	 45022625	 45023577	-	ENSG00000232956.3	ENST00000585030.1	SNHG15	SNHG15-004	MYO1G	NA	chr7:45012625-45018704	inter
CUST_39216_PI429285431	7.1667037	P	5.835725	P	2.51573280103086	0	lncRNA	40190-2_{3001..3082}	n386026|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zba.2||-1.2594100|-0.3698958	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n386026|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zba.2||-1.2594100|-0.3698958	chr11	121962810	121962891	-	NA	NA	NA	NA	BLID	NA	chr11:121986062-121986923	inter
CUST_38031_PI429285431	0.9093049	A	0.90783083	A	1.00102226962621	0	lncRNA	39115-1_{1..3000}	n377604|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029977||-1.1645100|-0.3389575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377604|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029977||-1.1645100|-0.3389575	chr6	  4181124	  4184123	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22816_PI429285431	8.3305855	P	8.723133	P	0.761783265019906	0	lncRNA	24396-1_{1..447}	lnc-SMYD3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMYD3-2:1	chr1	245839508	245839954	-	lnc-SMYD3-2	lnc-SMYD3-2:1	ENSG00000231612.1	RP11-522M21.3	KIF26B	NA	chr1:245829508-245849780	inner
CUST_40640_PI429285431	2.1838036	A	1.1529567	A	2.04322332536119	0	lncRNA	41379-1_{1..1882}	n410152|NR_036619|lncRNA|Homosapiens||RefGeneNoncode|NR_036619||3.0365400|-0.3275407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410152|NR_036619|lncRNA|Homosapiens||RefGeneNoncode|NR_036619||3.0365400|-0.3275407	chr12	 17141680	 17143561	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00"	NA	inter
CUST_43502_PI429285431	3.911446	P	5.0541215	P	0.452918853396595	0	lncRNA	48293-1_{1..888}	"gi|356460919|ref|NR_045484.1| Homo sapiens uncharacterized LOC646626 (LOC646626), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|356460919|ref|NR_045484.1| Homo sapiens uncharacterized LOC646626 (LOC646626), non-coding RNA"	Chr1	 85742041	 85742928	+	646626	NR_045484.1	NA	NA	NA	NA	NA	inter
CUST_40713_PI429285431	1.5407596	A	1.1160347	A	1.34231651903223	0	lncRNA	41452-1_{1..3000}	n410283|NR_037177_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_4||-1.0612800|-0.2921671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410283|NR_037177_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_4||-1.0612800|-0.2921671	chr6	  4148913	  4151912	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007648	0.92972225	A	0.91380775	A	1.01109215762518	0	lncRNA	TCONS_00020609	NA	NA	NA	NA	XLOC_009926	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009926), lincRNA [TCONS_00020609]"	chr12:124575792-124575851	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00020609	TCONS_00020609	chr12	124575792	124575851	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006359	0.9293361	A	0.91334087	A	1.01114873767252	0	lncRNA	TCONS_00016656	NA	NA	NA	NA	XLOC_007475	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007475), lincRNA [TCONS_00016656]"	chr9:98537317-98537376	hs|9q22.32	Agilent_HUMAN_G3V2	TCONS_00016656	TCONS_00016656	chr9	 98537317	 98537376	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32934_PI429285431	2.9221158	A	3.4423983	P	0.697235291321157	0	lncRNA	34555-1_{1..1467}	n339605|CR749513|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2049|NULL|-0.8012620|-0.1285865	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339605|CR749513|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2049|NULL|-0.8012620|-0.1285865	chr20	 23027732	 23029198	+	NA	NA	NA	NA	THBD	"hg19_refFlat_THBD:range=chr20:23028414-230301415'pad=0,hg19_refFlat_THBD:range=chr20:23028414-230301415'pad=0 3'pad=0 strand=- repeatMasking=none,-106.90chr20:23026270-23030301"	NA	inner
CUST_49632_PI429285431	1.7253364	A	1.2136803	A	1.42568583139754	0	lncRNA	53416-1_{1..798}	hg19_lincRNAsTranscripts_TCONS_l2_00026402 range=chr7:17496962-17564201 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026402 range=chr7:17496962-17564201 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 17496962	 17497759	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005622	2.2117338	A	0.9119874	A	2.46185603836688	0	lncRNA	ENST00000426023	XR_133487	XR_133487	NA	Hs.651507	XLOC_007085	NA	ENST00000426023	NP706921	NA	"PREDICTED: Homo sapiens hypothetical LOC100507516 (LOC100507516), miscRNA [XR_133487]"	chr8:54427931-54427872	hs|8q11.23	Agilent_HUMAN_G3V2	ENST00000426023	ENST00000426023	chr8	 54427872	 54427931	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012705	2.8035707	A	3.0938132	P	0.817764590433817	0	lncRNA	TCONS_l2_00021491	NA	NA	NA	NA	XLOC_l2_011424	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011424), lincRNA [TCONS_l2_00021491]"	chr4:190700574-190700515	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_l2_00021491	TCONS_l2_00021491	chr4	190700515	190700574	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004406	3.1418653	P	3.0122685	A	1.09398791413436	0	lncRNA	TCONS_00010366	NA	NA	NA	NA	XLOC_004863	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004863), lincRNA [TCONS_00010366]"	chr5:68430349-68430290	hs|5q13.2	Agilent_HUMAN_G3V2	TCONS_00010366	TCONS_00010366	chr5	 68430290	 68430349	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36425_PI429285431	2.8003762	A	1.7025062	A	2.140384519969	0	lncRNA	37640-1_{1..3000}	n344939|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_488|NULL|-1.3286400|-0.2541322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344939|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_488|NULL|-1.3286400|-0.2541322	chr7	 66804436	 66807435	+	NA	NA	NA	NA	NA	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-62.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80"	NA	inter
CUST_39529_PI429285431	2.3279264	A	1.7271988	A	1.51648118653605	0	lncRNA	40475-1_{1..2817}	n387367|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011cue.1||-1.0003300|-0.3495053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n387367|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011cue.1||-1.0003300|-0.3495053	chr5	 92745064	 92747880	-	NA	NA	NA	NA	NR2F1	NA	chr5:92919043-92926738	inter
CUST_20472_PI429285431	4.172179	P	4.984326	P	0.569533654369403	0	lncRNA	22115-2_{3001..3478}	lnc-RARS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RARS-2:1	chr5	168149944	168150421	+	lnc-RARS-2	lnc-RARS-2:1	ENSG00000254042.1	CTC-558O2.1	SLIT3	"hg19_refFlat_SLIT3:range=chr5:168093459-1687277135'pad=0,hg19_refFlat_SLIT3:range=chr5:168093459-1687277135'pad=0 3'pad=0 strand=- repeatMasking=none,-97.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70chr5:168136944-168157889"	NA	inner
CUST_29397_PI429285431	10.507947	P	10.775711	P	0.830605885760457	0	lncRNA	31151-1_{1..329}	n332741|AF017065|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062412|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062412|-1.1742000|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332741|AF017065|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062412|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062412|-1.1742000|-1.0000000	chr17	 18259293	 18259621	-	NA	NA	NA	NA	SHMT1	NA	chr17:18249293-18266856	inner
CUST_5387_PI429285431	5.632983	P	5.0869045	P	1.46011145615603	0	lncRNA	5321-1_{1..879}	"transcript_id ""ENST00000564390.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564390.1"" | genecode_v17"	chr16	  1115240	  1116118	+	ENSG00000261720.1	ENST00000564390.1	RP11-161M6.5	RP11-161M6.5-001	SSTR5	NA	chr16:1122756-1126502	inter
CUST_2376_PI429285431	0.9005742	A	0.97584295	A	0.949165290833627	0	lncRNA	2369-1_{1..427}	"transcript_id ""ENST00000446720.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446720.2"" | genecode_v17"	chr5	135802366	135802792	+	ENSG00000249803.1	ENST00000446720.2	RP11-114H21.2	RP11-114H21.2-001	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00"	NA	inter
CUST_29555_PI429285431	1.6767831	A	0.89382446	A	1.72065593177525	0	lncRNA	31315-1_{1..503}	n333038|AF187843|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072943|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072943|3.7388600|-0.1012890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333038|AF187843|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072943|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072943|3.7388600|-0.1012890	chr20	  4702566	  4703068	+	NA	NA	NA	NA	PRND	NA	chr20:4702556-4709106	inner
CUST_3836_PI429285431	1.1306007	A	1.0873665	A	1.03042121354314	0	lncRNA	3803-1_{1..475}	"transcript_id ""ENST00000414581.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414581.1"" | genecode_v17"	chr10	131076515	131076989	+	ENSG00000225424.1	ENST00000414581.1	RP11-168C9.1	RP11-168C9.1-001	NA	NA	NA	inter
CUST_3299_PI429285431	1.6180629	A	0.92417836	A	1.61763323110426	0	lncRNA	3277-1_{1..204}	"transcript_id ""ENST00000523525.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523525.1"" | genecode_v17"	chr8	127011238	127011441	-	ENSG00000254227.1	ENST00000523525.1	RP11-622O11.4	RP11-622O11.4-001	NA	NA	NA	inter
CUST_27801_PI429285431	1.1190739	A	1.3021885	A	0.88079940534068	0	lncRNA	29387-1_{1..514}	n325029|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078321|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078321|-1.1344400|-0.0610598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325029|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078321|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078321|-1.1344400|-0.0610598	chr20	 23285230	 23285743	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30359_PI429285431	0.8990887	A	0.88988316	A	1.00640119473085	0	lncRNA	32135-1_{1..851}	n335454|AY726598|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257382|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257382|-1.0271000|-0.3729804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335454|AY726598|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257382|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257382|-1.0271000|-0.3729804	chr14	 22133349	 22134199	-	NA	NA	NA	NA	OR4E2	"hg19_refFlat_OR4E2:range=chr14:22133297-221342385'pad=0,hg19_refFlat_OR4E2:range=chr14:22133297-221342385'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.00chr14:22133297-22134238"	NA	inner
CUST_19965_PI429285431	2.1218538	A	2.365315	A	0.844716302776891	0	lncRNA	21619-1_{1..560}	lnc-KCNA1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-KCNA1-2:1	chr12	  4951689	  4952248	+	lnc-KCNA1-2	lnc-KCNA1-2:1	ENSG00000255608.1	RP3-377H17.2	KCNA6	NA	chr12:4941689-4960278	inner
CUST_7363_PI429285431	2.505312	A	2.6332803	A	0.91511927560838	0	lncRNA	9009-1_{1..564}	lnc-RP11-62N21.1.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-62N21.1.1-5:1	chr4	134070184	134070747	-	lnc-RP11-62N21.1.1-5	lnc-RP11-62N21.1.1-5:1	ENSG00000250241	RP11-9G1.3	PCDH10	NA	chr4:134060184-134080271	inter
CUST_50587_PI429285431	0.9180702	A	0.90767443	A	1.00723182290337	0	lncRNA	54278-1_{1..1086}	hg19_lincRNAsTranscripts_TCONS_l2_00002977 range=chr10:37597320-37635807 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002977 range=chr10:37597320-37635807 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 37597320	 37598405	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010805	6.506749	P	6.583078	P	0.948467996691233	0	lncRNA	TCONS_l2_00002890	NA	NA	NA	NA	XLOC_l2_001483	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001483), lincRNA [TCONS_l2_00002890]"	chr10:13570227-13570286	hs|10p13	Agilent_HUMAN_G3V2	TCONS_l2_00002890	TCONS_l2_00002890	chr10	 13570227	 13570286	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46254_PI429285431	1.3205941	A	0.9126105	A	1.32683005761981	0	lncRNA	50493-1_{1..651}	"gi|388490250|ref|NR_046536.1| Homo sapiens GPC6 antisense RNA 2 (GPC6-AS2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388490250|ref|NR_046536.1| Homo sapiens GPC6 antisense RNA 2 (GPC6-AS2), non-coding RNA"	Chr13	 94470677	 94471327	-	100873973	NR_046536.1	NA	NA	NA	NA	NA	inter
CUST_17710_PI429285431	4.2574577	P	4.067867	P	1.14044012124246	0	lncRNA	19441-1_{1..370}	lnc-TMEM215-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM215-1:1	chr9	 32745609	 32745978	+	lnc-TMEM215-1	lnc-TMEM215-1:1	XLOC_007314	linc-TMEM215-1	NA	NA	NA	inter
CUST_29407_PI429285431	6.9138703	P	6.9057355	P	1.00565454058771	0	lncRNA	31161-1_{1..421}	n332769|AF029311|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062960|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062960|2.2620000|-0.1681389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332769|AF029311|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062960|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062960|2.2620000|-0.1681389	chr17	 40474289	 40474709	-	NA	NA	NA	NA	STAT3	NA	chr17:40465343-40485337	inner
CUST_32841_PI429285431	0.89651144	A	0.89206034	A	1.00309003175139	0	lncRNA	34475-1_{1..697}	n339497|AJ001876|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1937|NULL|-0.9377430|-0.2136632	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339497|AJ001876|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1937|NULL|-0.9377430|-0.2136632	chr21	 39059186	 39059882	+	NA	NA	NA	NA	KCNJ6	NA	chr21:39049186-39069882	inner
CUST_34940_PI429285431	1.5290737	A	0.9189687	A	1.52637029484104	0	lncRNA	36358-1_{1..2912}	n341857|S70004|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4337|NULL|13.7833000|-0.3571103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341857|S70004|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4337|NULL|13.7833000|-0.3571103	chr12	 21689122	 21692033	-	NA	NA	NA	NA	GYS2	NA	chr12:21689123-21757781	inner
CUST_5977_PI429285431	2.7981057	A	3.3832202	P	0.666596431785578	0	lncRNA	5905-1_{1..457}	"transcript_id ""ENST00000589914.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589914.1"" | genecode_v17"	chr17	 74852251	 74852707	+	ENSG00000267535.1	ENST00000589914.1	LINC00868	LINC00868-002	MGAT5B	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50chr17:74864798-74867918"	NA	inter
CUST_24811_PI429285431	4.283976	P	4.9176087	P	0.644551392601692	0	lncRNA	26352-1_{1..594}	lnc-WHAMM-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WHAMM-2:1	chr15	 83423381	 83423974	+	lnc-WHAMM-2	lnc-WHAMM-2:1	ENSG00000250988.3	RP11-752G15.6	FSD2	NA	chr15:83428024-83433689	inter
CUST_48993_PI429285431	10.729939	P	11.12679	P	0.759514282679072	0	lncRNA	52825-1_{1..956}	hg19_lincRNAsTranscripts_TCONS_l2_00020324 range=chr3:197305084-197342531 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020324 range=chr3:197305084-197342531 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	197305084	197306039	-	NA	NA	NA	NA	BDH1	NA	chr3:197295084-197300194	inter
CUST_34694_PI429285431	0.9142622	A	0.90432024	A	1.00691504078561	0	lncRNA	36145-1_{1..1905}	n341601|BC033393|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4072|NULL|-1.0923800|-0.3770398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341601|BC033393|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4072|NULL|-1.0923800|-0.3770398	chr8	125952282	125954186	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10856_PI429285431	0.9104897	A	0.9192914	A	0.993917699001068	0	lncRNA	12394-1_{1..692}	lnc-SBDS-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SBDS-1:3	chr7	 66440229	 66440920	-	lnc-SBDS-1	lnc-SBDS-1:3	XLOC_006483	linc-GUSB-4	NA	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-26.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70"	NA	inter
CUST_30183_PI429285431	2.6013215	A	3.2672052	A	0.63030250433011	0	lncRNA	31957-1_{1..215}	n334884|AJ459835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248092_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248092_05|-1.3295600|-0.3439158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334884|AJ459835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248092_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248092_05|-1.3295600|-0.3439158	chr6	   729608	   729822	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24032_PI429285431	3.0716949	A	2.7582912	A	1.24263595190119	0	lncRNA	25584-1_{1..535}	lnc-JAG2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JAG2-1:1	chr14	105647466	105648000	-	lnc-JAG2-1	lnc-JAG2-1:1	ENSG00000257622.1	RP11-44N21.4	NUDT14	NA	chr14:105639276-105647660	inner
LNCA_21_P0006913	0.9231851	A	0.909996	A	1.00918390307992	0	lncRNA	TCONS_00018335	NA	NA	NA	NA	XLOC_008615	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008615), lincRNA [TCONS_00018335]"	chr10:112877740-112877799	hs|10q25.2	Agilent_HUMAN_G3V2	TCONS_00018335	TCONS_00018335	chr10	112877740	112877799	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12774_PI429285431	0.89469045	A	0.8919111	A	1.00192835550699	0	lncRNA	14397-1_{1..1100}	lnc-GNAO1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNAO1-1:1	chr16	 56170559	 56171658	+	lnc-GNAO1-1	lnc-GNAO1-1:1	XLOC_011734	linc-GNAO1-1	NA	NA	NA	inter
CUST_46697_PI429285431	0.92349106	A	0.923163	A	1.00022741972	0	lncRNA	50857-1_{1..1562}	"gi|397139914|ref|XR_109340.2| PREDICTED: Homo sapiens uncharacterized LOC100129697 (LOC100129697), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139914|ref|XR_109340.2| PREDICTED: Homo sapiens uncharacterized LOC100129697 (LOC100129697), misc_RNA"	Chr16	 89006056	 89007617	+	100129697	XR_109340.3	NA	NA	NA	NA	NA	inter
CUST_33182_PI429285431	0.9059574	A	0.9135127	A	0.994776753943979	0	lncRNA	34774-1_{1..1535}	n339872|AK130568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2320|NULL|-0.9572520|-0.2582116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339872|AK130568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2320|NULL|-0.9572520|-0.2582116	chr4	 15412321	 15413855	+	NA	NA	NA	NA	C1QTNF7	NA	chr4:15402321-15423823	inner
CUST_23579_PI429285431	6.380885	P	6.6166677	P	0.849224147704726	0	lncRNA	25146-1_{1..950}	lnc-ITGAL-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITGAL-3:1	chr16	 30593851	 30594800	+	lnc-ITGAL-3	lnc-ITGAL-3:1	ENSG00000239791.1	AC002310.7	ZNF785	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF787:range=chr19:56599389-566145865'pad=0,hg19_refFlat_ZNF787:range=chr19:56599389-566145865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF785:range=chr16:30593881-305969325'pad=0,hg19_refFlat_ZNF785:range=chr16:30593881-305969325'pad=0 3'pad=0 strand=- repeatMasking=none,-102.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_REPIN1:range=chr7:150068331-1500700345'pad=0,hg19_refFlat_REPIN1:range=chr7:150068331-1500700345'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_REPIN1:range=chr7:150066801-1500700345'pad=0,hg19_refFlat_REPIN1:range=chr7:150066801-1500700345'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF764:range=chr16:30566515-305695035'pad=0,hg19_refFlat_ZNF764:range=chr16:30566515-305695035'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20chr16:30591994-30597092"	NA	inner
CUST_44875_PI429285431	6.3426647	P	6.427761	P	0.942721607081459	0	lncRNA	49399-1_{1..1694}	"gi|410170507|ref|XR_171040.1| PREDICTED: Homo sapiens zinc finger protein 316 (ZNF316), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170507|ref|XR_171040.1| PREDICTED: Homo sapiens zinc finger protein 316 (ZNF316), misc_RNA"	NA	NA	NA	NA	NA	XR_171040.1	NA	NA	NA	NA	NA	Unknown
CUST_9813_PI429285431	2.7394567	A	3.4385219	P	0.615971198386626	0	lncRNA	11330-1_{1..1324}	lnc-TMCC1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMCC1-3:1	chr3	129838403	129839726	-	lnc-TMCC1-3	lnc-TMCC1-3:1	XLOC_003249	linc-TMCC1-2	NA	NA	NA	inter
CUST_20317_PI429285431	1.3087063	A	2.2893736	A	0.506745297172886	0	lncRNA	21960-1_{1..580}	lnc-RGS5-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RGS5-1:5	chr1	163291412	163291991	-	lnc-RGS5-1	lnc-RGS5-1:5	ENSG00000232995.2	RP11-267N12.3	NUF2	NA	chr1:163291723-163301562	inner
CUST_7084_PI429285431	4.5789366	P	4.4016647	P	1.13074365458994	0	lncRNA	7019-1_{1..775}	"transcript_id ""ENST00000602863.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602863.1"" | genecode_v17"	chrX	 73048923	 73049697	-	ENSG00000229807.5	ENST00000602863.1	XIST	XIST-008	NA	NA	NA	inter
LNCA_21_P0005061	4.0109143	P	3.8308454	P	1.13293799067594	0	lncRNA	TCONS_00012290	NA	NA	NA	NA	XLOC_005847	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005847), lincRNA [TCONS_00012290]"	chr6:137994354-137994295	hs|6q23.3	Agilent_HUMAN_G3V2	TCONS_00012290	TCONS_00012290	chr6	137994295	137994354	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16535_PI429285431	1.791633	A	1.6648595	A	1.0918491143402	0	lncRNA	18234-1_{1..2868}	lnc-MYEOV-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYEOV-6:2	chr11	 69306869	 69309736	+	lnc-MYEOV-6	lnc-MYEOV-6:2	XLOC_009194	linc-CCND1-1	NA	NA	NA	inter
CUST_51968_PI429285431	0.90343654	A	0.9003104	A	1.00216922449757	0	lncRNA	55510-1_{1..2064}	hg19_lincRNAsTranscripts_TCONS_l2_00016251 range=chr20:37270445-37279882 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016251 range=chr20:37270445-37279882 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 37270445	 37272508	+	NA	NA	NA	NA	ARHGAP40	NA	chr20:37260445-37279295	inner
CUST_13591_PI429285431	0.91712093	A	0.91926336	A	0.998516082781523	0	lncRNA	15230-1_{1..495}	lnc-TPO-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPO-1:1	chr2	  1558089	  1558583	+	lnc-TPO-1	lnc-TPO-1:1	XLOC_001313	linc-TTC15-9	NA	NA	NA	inter
CUST_228_PI429285431	1.2270018	A	1.0954645	A	1.09546037492613	0	lncRNA	218-1_{1..789}	"transcript_id ""ENST00000439795.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439795.1"" | genecode_v17"	chr1	 48519881	 48520669	+	ENSG00000226133.1	ENST00000439795.1	RP4-683M8.2	RP4-683M8.2-002	NA	NA	NA	inter
CUST_32269_PI429285431	0.9595159	A	0.9158396	A	1.03073702458571	0	lncRNA	33957-2_{3001..4409}	n338846|AK124568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1269|NULL|-1.1894500|-0.3401477	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338846|AK124568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1269|NULL|-1.1894500|-0.3401477	chr12	  5026005	  5027413	+	NA	NA	NA	NA	KCNA1	NA	chr12:5019073-5027422	inner
CUST_46687_PI429285431	0.941889	A	0.94586945	A	0.997244764951622	0	lncRNA	50850-1_{1..1797}	"gi|336391112|ref|NR_038859.1| Homo sapiens long intergenic non-protein coding RNA 311 (LINC00311), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|336391112|ref|NR_038859.1| Homo sapiens long intergenic non-protein coding RNA 311 (LINC00311), non-coding RNA"	Chr16	 85316564	 85318360	+	197196	NR_038859.1	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.21;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50"	NA	inter
CUST_23525_PI429285431	3.4163191	P	3.5567358	P	0.907257070390492	0	lncRNA	25092-1_{1..629}	lnc-AC021066.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC021066.1-2:1	chr12	 52821941	 52822569	+	lnc-AC021066.1-2	lnc-AC021066.1-2:1	ENSG00000257500.1	RP11-1020M18.10	KRT75	"hg19_refFlat_LMNB2:range=chr19:2430909-24569315'pad=0,hg19_refFlat_LMNB2:range=chr19:2430909-24569315'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_KRT6B:range=chr12:52840974-528458625'pad=0,hg19_refFlat_KRT6B:range=chr12:52840974-528458625'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10;hg19_refFlat_LMNA:range=chr1:156095995-1561096305'pad=0,hg19_refFlat_LMNA:range=chr1:156095995-1561096305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_LMNA:range=chr1:156084710-1561088975'pad=0,hg19_refFlat_LMNA:range=chr1:156084710-1561088975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_LMNA:range=chr1:156084710-1561075555'pad=0,hg19_refFlat_LMNA:range=chr1:156084710-1561075555'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_KRT5:range=chr12:52908726-529140805'pad=0,hg19_refFlat_KRT5:range=chr12:52908726-529140805'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_KRT75:range=chr12:52818301-528280885'pad=0,hg19_refFlat_KRT75:range=chr12:52818301-528280885'pad=0 3'pad=0 strand=- repeatMasking=none,-95.40;hg19_refFlat_KRT6C:range=chr12:52862846-528675215'pad=0,hg19_refFlat_KRT6C:range=chr12:52862846-528675215'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10chr12:52811941-52828110"	NA	inner
CUST_13849_PI429285431	8.149305	P	8.248039	P	0.933852110033765	0	lncRNA	15492-1_{1..413}	lnc-C6orf100-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C6orf100-10:1	chr6	 28864888	 28865300	+	lnc-C6orf100-10	lnc-C6orf100-10:1	XLOC_005225	linc-LOC100129636-2	TRIM27	NA	chr6:28870779-28875099	inter
CUST_44197_PI429285431	0.93401957	A	0.92090577	A	1.00913123112734	0	lncRNA	48854-1_{1..3000}	"gi|299782590|ref|NR_033860.1| Homo sapiens uncharacterized LOC440970 (LOC440970), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299782590|ref|NR_033860.1| Homo sapiens uncharacterized LOC440970 (LOC440970), non-coding RNA"	Chr3	 84687556	 84690555	-	440970	NR_033860.1	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70"	NA	inter
CUST_41816_PI429285431	5.2536664	P	5.639824	P	0.765164793746923	0	lncRNA	43411-1_{1..74}	ENST00000577305 ncrna:miRNA chromosome:GRCh37:1:19209696:19209769:-1 gene:ENSG00000265606 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577305 ncrna:miRNA chromosome:GRCh37:1:19209696:19209769:-1 gene:ENSG00000265606 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 19209696	 19209769	-	ENSG00000265606	ENST00000577305	NA	NA	ALDH4A1	NA	chr1:19199696-19219769	inner
CUST_31902_PI429285431	4.562954	P	4.727379	P	0.892284076970465	0	lncRNA	33633-1_{1..1486}	n338457|BC042084|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|854|NULL|-0.7475520|-0.1612388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338457|BC042084|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|854|NULL|-0.7475520|-0.1612388	chr14	 93372041	 93373526	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3172_PI429285431	0.93005204	A	0.93178093	A	0.998802342535851	0	lncRNA	3152-1_{1..473}	"transcript_id ""ENST00000521131.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521131.1"" | genecode_v17"	chr8	 72587612	 72588084	+	ENSG00000254277.1	ENST00000521131.1	RP11-1144P22.1	RP11-1144P22.1-001	NA	NA	NA	inter
CUST_6282_PI429285431	5.879649	P	6.039661	P	0.89501762634968	0	lncRNA	6206-1_{1..523}	"transcript_id ""ENST00000580639.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580639.1"" | genecode_v17"	chr18	 76685064	 76685586	-	ENSG00000265101.1	ENST00000580639.1	CTD-2382H12.1	CTD-2382H12.1-001	NA	NA	NA	inter
CUST_7082_PI429285431	5.163866	P	5.0268974	P	1.09959221662582	0	lncRNA	7017-13_{36001..37027}	"transcript_id ""ENST00000604411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000604411.1"" | genecode_v17"	chrX	 73048040	 73049066	+	ENSG00000270641.1	ENST00000604411.1	TSIX	TSIX-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_50909_PI429285431	1.4115747	A	1.1200557	A	1.22392826204192	0	lncRNA	54550-1_{1..574}	hg19_lincRNAsTranscripts_TCONS_l2_00006112 range=chr12:9549595-9552570 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006112 range=chr12:9549595-9552570 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  9549595	  9550168	-	NA	NA	NA	NA	LOC728715	NA	chr12:9549658-9555094	inter
LNCA_21_P0014828	4.277466	P	4.631	P	0.782664546715265	0	lncRNA	XR_132678	XR_132678	XR_132678	NA	NA	LOC100652746	uncharacterized LOC100652746	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652746 (LOC100652746), miscRNA [XR_132678]"	chr22:20229945-20230004	hs|22q11.21	Agilent_HUMAN_G3V2	XR_132678	XR_132678	chr22	 20229945	 20230004	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1223_PI429285431	0.9125804	A	0.9111413	A	1.00099800578422	0	lncRNA	1215-1_{1..974}	"transcript_id ""ENST00000430494.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430494.1"" | genecode_v17"	chr2	208104535	208105508	+	ENSG00000229647.1	ENST00000430494.1	AC007879.7	AC007879.7-002	NA	NA	NA	inter
LNCA_21_P0005132	1.0915034	A	0.93093914	A	1.11772421155356	0	lncRNA	TCONS_00012597	NA	NA	NA	NA	XLOC_005461	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005461), lincRNA [TCONS_00012597]"	chr6:129015145-129015204	hs|6q22.33	Agilent_HUMAN_G3V2	TCONS_00012597	TCONS_00012597	chr6	129015145	129015204	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003942	2.8533113	A	2.905427	A	0.96452082968116	0	lncRNA	ENST00000507389	XR_110569	XR_110569	NA	Hs.125844	XLOC_005005	NA	ENST00000507389	THC2613924	NA	"PREDICTED: Homo sapiens hypothetical LOC100506102 (LOC100506102), miscRNA [XR_110569]"	chr5:132446844-132446785	hs|5q31.1	Agilent_HUMAN_G3V2	ENST00000507389	ENST00000507389	chr5	132446785	132446844	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30194_PI429285431	0.90803576	A	1.3342777	A	0.744197815122959	0	lncRNA	31968-1_{1..342}	n334956|AJ459855|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248112_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248112_08|-1.1092400|-0.2825648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334956|AJ459855|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248112_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248112_08|-1.1092400|-0.2825648	chr6	   698595	   698936	-	NA	NA	NA	NA	EXOC2	NA	chr6:688595-693109	inter
CUST_22184_PI429285431	3.7122092	P	4.254808	P	0.686533107520921	0	lncRNA	23784-3_{6001..8941}	lnc-ARC-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARC-1:4	chr8	143757347	143760287	-	lnc-ARC-1	lnc-ARC-1:4	ENSG00000234616.3	JRK	PSCA	NA	chr8:143751726-143761350	inner
CUST_11551_PI429285431	2.6190882	A	2.4596338	A	1.11686468107907	0	lncRNA	13124-1_{1..687}	lnc-SUCLG1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SUCLG1-3:2	chr2	 82765701	 82766387	-	lnc-SUCLG1-3	lnc-SUCLG1-3:2	XLOC_002184	linc-LRRTM1-7	NA	NA	NA	inter
CUST_3773_PI429285431	2.1504996	A	1.9164679	A	1.17611709255227	0	lncRNA	3741-1_{1..2222}	"transcript_id ""ENST00000422661.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422661.1"" | genecode_v17"	chr10	103012578	103014799	-	ENSG00000229649.1	ENST00000422661.1	RP11-107I14.4	RP11-107I14.4-001	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-23.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	inter
CUST_40143_PI429285431	0.9072023	A	0.90214753	A	1.00350984470403	0	lncRNA	40981-1_{1..2112}	n407761|NR_027282|lncRNA|Homosapiens||RefGeneNoncode|NR_027282||5.1009400|-0.2629676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407761|NR_027282|lncRNA|Homosapiens||RefGeneNoncode|NR_027282||5.1009400|-0.2629676	chr10	124639148	124641259	+	NA	NA	NA	NA	FAM24B	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20chr10:124629148-124639157"	NA	inter
CUST_16792_PI429285431	3.359357	P	3.1888502	A	1.12545377252439	0	lncRNA	18501-1_{1..3000}	lnc-NDFIP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDFIP1-1:1	chr5	141543806	141546805	+	lnc-NDFIP1-1	lnc-NDFIP1-1:1	XLOC_004584	linc-ARHGAP26-6	NDFIP1	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70chr5:141533806-141534008"	NA	inter
LNCA_21_P0012647	1.0183017	A	0.9539684	A	1.04560163342007	0	lncRNA	THC2774778	NA	NA	NA	NA	XLOC_l2_011001	NA	NA	THC2774778	NA	"BROAD Institute lincRNA (XLOC_l2_011001), lincRNA [TCONS_l2_00020967]"	chr4:189700372-189700431	hs|4q35.2	Agilent_HUMAN_G3V2	THC2774778	THC2774778	chr4	189700372	189700431	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14709_PI429285431	1.5892177	A	2.1966782	A	0.656351025781459	0	lncRNA	16373-1_{1..994}	lnc-SEL1L3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEL1L3-1:1	chr4	 25871333	 25872326	-	lnc-SEL1L3-1	lnc-SEL1L3-1:1	XLOC_003911	linc-SEL1L3	SEL1L3	NA	chr4:25861333-25864610	inter
CUST_37664_PI429285431	5.5162187	P	6.113136	P	0.661165201637607	0	lncRNA	38757-1_{1..253}	n346147|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1697|NULL|-1.2564900|-0.1167320	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346147|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1697|NULL|-1.2564900|-0.1167320	chrX	153791116	153791368	+	NA	NA	NA	NA	IKBKG	NA	chrX:153781116-153793261	inner
CUST_39951_PI429285431	8.88605	P	9.314437	P	0.74309213252998	0	lncRNA	40825-1_{1..1643}	n406954|NR_024450|lncRNA|Homosapiens||RefGeneNoncode|NR_024450||4.8006600|-0.1840140	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406954|NR_024450|lncRNA|Homosapiens||RefGeneNoncode|NR_024450||4.8006600|-0.1840140	chrX	152965946	152967588	-	NA	NA	NA	NA	SLC6A8	NA	chrX:152955946-152962048	inner
CUST_50043_PI429285431	0.9332209	A	0.91653985	A	1.01162952596226	0	lncRNA	53779-1_{1..833}	hg19_lincRNAsTranscripts_TCONS_l2_00027740 range=chr8:47748413-47775995 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027740 range=chr8:47748413-47775995 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 47748413	 47749245	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49875_PI429285431	4.0784874	P	3.9999983	P	1.05591163031616	0	lncRNA	53626-1_{1..847}	hg19_lincRNAsTranscripts_TCONS_l2_00026042 range=chr7:76610338-76633660 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026042 range=chr7:76610338-76633660 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 76610338	 76611184	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009256	1.0247425	A	0.9531343	A	1.05088747549631	0	lncRNA	TCONS_00025434	NA	NA	NA	NA	XLOC_012253	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012253), lincRNA [TCONS_00025434]"	chr17:51002491-51004171	hs|17q22	Agilent_HUMAN_G3V2	TCONS_00025434	TCONS_00025434	chr17	 51002491	 51004171	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42464_PI429285431	6.7723274	P	6.797017	P	0.983032077981703	0	lncRNA	45207-1_{1..136}	ENST00000384225 ncrna:snoRNA chromosome:GRCh37:16:58593700:58593835:-1 gene:ENSG00000206952 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384225 ncrna:snoRNA chromosome:GRCh37:16:58593700:58593835:-1 gene:ENSG00000206952 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 58593700	 58593835	-	ENSG00000206952	ENST00000384225	NA	NA	CNOT1	NA	chr16:58583700-58603835	inner
CUST_35809_PI429285431	0.92688423	A	0.9122861	A	1.01017001932433	0	lncRNA	37214-2_{3001..3407}	n344484|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_32|NULL|-1.3225200|-0.2905349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344484|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_32|NULL|-1.3225200|-0.2905349	chr13	 32518444	 32518850	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31627_PI429285431	0.9070098	A	0.90472996	A	1.00158151394431	0	lncRNA	33382-1_{1..3000}	n338150|AK125592|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|539|NULL|-1.2643700|-0.3443037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338150|AK125592|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|539|NULL|-1.2643700|-0.3443037	chr15	 95823981	 95826980	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009438	0.91878015	A	0.91851205	A	1.00018585002709	0	lncRNA	TCONS_00026231	NA	NA	NA	NA	XLOC_012607	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012607), lincRNA [TCONS_00026231]"	chr18:1972062-1972876	hs|18p11.32	Agilent_HUMAN_G3V2	TCONS_00026231	TCONS_00026231	chr18	  1972062	  1972876	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44759_PI429285431	4.651968	P	5.074896	P	0.745909238208592	0	lncRNA	49304-2_{3001..4040}	"gi|393715084|ref|NR_072998.1| Homo sapiens PTK7 protein tyrosine kinase 7 (PTK7), transcript variant PTK7-5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393715084|ref|NR_072998.1| Homo sapiens PTK7 protein tyrosine kinase 7 (PTK7), transcript variant PTK7-5, non-coding RNA"	Chr6	 43047006	 43048045	+	5754	NR_072998.1	NA	NA	NA	NA	NA	inter
CUST_20230_PI429285431	0.91195506	A	0.90243924	A	1.00661766441831	0	lncRNA	21873-1_{1..1752}	lnc-RXRG-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-RXRG-1:3	chr1	165550592	165552343	-	lnc-RXRG-1	lnc-RXRG-1:3	ENSG00000237463.1	RP11-280O1.2	NA	"hg19_refFlat_RPS2:range=chr16:2012099-20146265'pad=0,hg19_refFlat_RPS2:range=chr16:2012099-20146265'pad=0 3'pad=0 strand=- repeatMasking=none,-96.80"	NA	inter
CUST_23269_PI429285431	4.3261313	P	5.224983	P	0.536313435232359	0	lncRNA	24840-1_{1..532}	lnc-RFC2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RFC2-2:1	chr7	 73476540	 73477071	-	lnc-RFC2-2	lnc-RFC2-2:1	ENSG00000232415.1	CTB-51J22.1	ELN	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ELN:range=chr7:73442518-734830305'pad=0,hg19_refFlat_ELN:range=chr7:73442518-734830305'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.50chr7:73466540-73484237"	NA	inner
CUST_14675_PI429285431	5.102112	P	4.815953	P	1.21938947607502	0	lncRNA	16343-3_{6001..8535}	lnc-BANP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BANP-1:2	chr16	 88225528	 88228062	+	lnc-BANP-1	lnc-BANP-1:2	XLOC_011826	linc-ZNF469-3	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.54;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20"	NA	inter
CUST_47394_PI429285431	1.3429731	A	1.3101214	A	1.02303230302614	0	lncRNA	51441-2_{3001..6000}	"gi|408684414|ref|NR_073202.1| Homo sapiens Down syndrome cell adhesion molecule (DSCAM), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|408684414|ref|NR_073202.1| Homo sapiens Down syndrome cell adhesion molecule (DSCAM), transcript variant 3, non-coding RNA"	Chr21	 41387343	 41390342	-	1826	NR_073202.1	NA	NA	NA	NA	NA	inter
CUST_25546_PI429285431	0.9227804	A	0.91421187	A	1.00595692474013	0	lncRNA	27076-1_{1..434}	lnc-FOXB1-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXB1-3:8	chr15	 60837004	 60837437	+	lnc-FOXB1-3	lnc-FOXB1-3:8	ENSG00000259274.1	CTD-2501E16.2	RORA	NA	chr15:60827004-60847358	inner
CUST_22685_PI429285431	7.8265257	P	7.7705584	P	1.03955587242548	0	lncRNA	24268-1_{1..345}	lnc-KCNMB1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNMB1-3:2	chr5	170194312	170194656	-	lnc-KCNMB1-3	lnc-KCNMB1-3:2	ENSG00000253348.1	MIR4454	NA	NA	NA	inter
CUST_51661_PI429285431	7.743471	P	7.547926	P	1.14515667925561	0	lncRNA	55230-1_{1..760}	hg19_lincRNAsTranscripts_TCONS_l2_00011415 range=chr17:62967132-62971708 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011415 range=chr17:62967132-62971708 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 62967132	 62967891	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9901_PI429285431	0.89508003	A	0.8816256	A	1.00936952192644	0	lncRNA	11425-1_{1..2715}	lnc-MAP1LC3B2-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MAP1LC3B2-2:6	chr12	116974158	116976872	+	lnc-MAP1LC3B2-2	lnc-MAP1LC3B2-2:6	XLOC_009897	linc-MAP1LC3B2-2	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00"	NA	inter
LNCA_21_P0012517	0.94515896	A	0.9257622	A	1.01353559737626	0	lncRNA	ENST00000482787	NA	BC036236	NA	Hs.606987	XLOC_l2_010014	NA	ENST00000482787	THC2606871	NA	"BROAD Institute lincRNA (XLOC_l2_010014), lincRNA [TCONS_l2_00019997]"	chr3:181721565-181721624	hs|3q26.33	Agilent_HUMAN_G3V2	ENST00000482787	ENST00000482787	chr3	181721565	181721624	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25538_PI429285431	3.8235643	P	0.9020487	A	7.57641627640857	0	lncRNA	27068-1_{1..404}	lnc-VIM-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VIM-1:3	chr10	 17450062	 17450465	+	lnc-VIM-1	lnc-VIM-1:3	ENSG00000204832.5	RP11-414K1.3	ST8SIA6	NA	chr10:17440062-17460285	inter
CUST_50619_PI429285431	2.6605256	A	2.2640836	A	1.31625772652798	0	lncRNA	54304-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00003384 range=chr10:6162514-6183674 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003384 range=chr10:6162514-6183674 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	  6162514	  6165513	-	NA	NA	NA	NA	PFKFB3	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30chr10:6186843-6193674"	NA	inter
CUST_18182_PI429285431	1.2950569	A	1.0222036	A	1.20819498220959	0	lncRNA	19918-1_{1..1073}	lnc-PPIAL4C-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPIAL4C-5:2	chr1	149231540	149232612	+	lnc-PPIAL4C-5	lnc-PPIAL4C-5:2	ENSG00000232721	RP11-403I13.5	NA	NA	NA	inter
CUST_26417_PI429285431	1.0610769	A	1.0887775	A	0.980982564475988	0	lncRNA	27924-1_{1..599}	lnc-CHURC1-FNTB-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHURC1-FNTB-1:3	chr14	 65560350	 65560948	+	lnc-CHURC1-FNTB-1	lnc-CHURC1-FNTB-1:3	ENSG00000259118.1	RP11-840I19.3	MAX	"hg19_refFlat_MAX:range=chr14:65472922-655690575'pad=0,hg19_refFlat_MAX:range=chr14:65472922-655690575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MAX:range=chr14:65543194-655690575'pad=0,hg19_refFlat_MAX:range=chr14:65543194-655690575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MAX:range=chr14:65544130-655690575'pad=0,hg19_refFlat_MAX:range=chr14:65544130-655690575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MAX:range=chr14:65550898-655690575'pad=0,hg19_refFlat_MAX:range=chr14:65550898-655690575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60chr14:65550350-65569227"	NA	inner
CUST_39515_PI429285431	6.8470516	P	6.9872026	P	0.907424174591922	0	lncRNA	40461-1_{1..1528}	n387314|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011byo.1||0.9989540|-0.2862193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n387314|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011byo.1||0.9989540|-0.2862193	chr4	 39481874	 39483401	+	NA	NA	NA	NA	LIAS	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10chr4:39471874-39479273"	NA	inter
CUST_25944_PI429285431	2.0077887	A	1.6448004	A	1.28608705345121	0	lncRNA	27463-1_{1..277}	lnc-TBC1D5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBC1D5-1:1	chr3	 17085546	 17085822	-	lnc-TBC1D5-1	lnc-TBC1D5-1:1	ENSG00000226441.1	PLCL2-AS1	PLCL2	"hg19_refFlat_PLCL2:range=chr3:17051217-171314045'pad=0,hg19_refFlat_PLCL2:range=chr3:17051217-171314045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PLCL2:range=chr3:16926535-171314045'pad=0,hg19_refFlat_PLCL2:range=chr3:16926535-171314045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40chr3:17075546-17095684"	NA	inner
CUST_18464_PI429285431	7.183653	P	8.376115	P	0.437555522255134	0	lncRNA	20185-2_{3001..3212}	lnc-RNF112-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RNF112-1:1	chr17	 19322018	 19322229	+	lnc-RNF112-1	lnc-RNF112-1:1	ENSG00000128482	RNF112	RNF112	NA	chr17:19314491-19320589	inner
CUST_13877_PI429285431	0.91636217	A	0.9164229	A	0.999957906057699	0	lncRNA	15523-1_{1..1540}	lnc-TTC14-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC14-3:1	chr3	180587856	180589395	+	lnc-TTC14-3	lnc-TTC14-3:1	XLOC_002938	linc-FXR1	NA	NA	NA	inter
CUST_18384_PI429285431	9.589269	P	10.067109	P	0.718051885398384	0	lncRNA	20110-1_{1..763}	lnc-HIC2-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HIC2-1:9	chr22	 21823931	 21824693	+	lnc-HIC2-1	lnc-HIC2-1:9	ENSG00000206140	KB-1323B2.6	TMEM191C	NA	chr22:21821459-21824224	inner
CUST_46463_PI429285431	8.322174	P	7.9754734	P	1.27164907623043	0	lncRNA	50664-1_{1..2477}	"gi|315468528|ref|NR_037672.1| Homo sapiens small EDRK-rich factor 2 (SERF2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315468528|ref|NR_037672.1| Homo sapiens small EDRK-rich factor 2 (SERF2), transcript variant 6, non-coding RNA"	Chr15	 44084174	 44086650	+	10169	NR_037672.1	NA	NA	NA	"hg19_refFlat_SERINC4:range=chr15:44087198-440921845'pad=0,hg19_refFlat_SERINC4:range=chr15:44087198-440921845'pad=0 3'pad=0 strand=- repeatMasking=none,-97.40;hg19_refFlat_SERINC4:range=chr15:44087198-440906405'pad=0,hg19_refFlat_SERINC4:range=chr15:44087198-440906405'pad=0 3'pad=0 strand=- repeatMasking=none,-97.40"	NA	inter
CUST_50933_PI429285431	0.9169372	A	0.915441	A	1.00103762477204	0	lncRNA	54574-1_{1..1710}	hg19_lincRNAsTranscripts_TCONS_l2_00005629 range=chr12:47432453-47436922 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005629 range=chr12:47432453-47436922 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 47432453	 47434162	+	NA	NA	NA	NA	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80"	NA	inter
CUST_5471_PI429285431	1.988419	A	1.9328234	A	1.03928807283227	0	lncRNA	5404-1_{1..684}	"transcript_id ""ENST00000598600.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598600.1"" | genecode_v17"	chr16	 26329450	 26330133	+	ENSG00000231876.2	ENST00000598600.1	AC009158.1	AC009158.1-005	NA	NA	NA	inter
LNCA_21_P0010864	1.7387748	A	0.9215922	A	1.76196174330512	0	lncRNA	TCONS_l2_00003443	NA	NA	NA	NA	XLOC_l2_001890	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001890), lincRNA [TCONS_l2_00003443]"	chr10:27257895-27255783	hs|10p12.1	Agilent_HUMAN_G3V2	TCONS_l2_00003443	TCONS_l2_00003443	chr10	 27255783	 27257895	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5316_PI429285431	0.9134192	A	1.2415906	A	0.796545456740936	0	lncRNA	5255-2_{3001..3480}	"transcript_id ""ENST00000557481.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557481.2"" | genecode_v17"	chr15	 94264771	 94265250	-	ENSG00000258754.3	ENST00000557481.2	CTD-3049M7.1	CTD-3049M7.1-001	NA	NA	NA	inter
CUST_36068_PI429285431	5.14604	P	5.188817	P	0.970784514103335	0	lncRNA	37376-3_{6001..9000}	n344659|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_208|NULL|-1.3129200|-0.4214645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n344659|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_208|NULL|-1.3129200|-0.4214645	chr1	 23613825	 23616824	-	NA	NA	NA	NA	HNRNPR	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20chr1:23636276-23646128"	NA	inter
CUST_9666_PI429285431	1.040785	A	0.9122212	A	1.09320487614234	0	lncRNA	11183-1_{1..490}	lnc-MRPS18A-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPS18A-2:4	chr6	 43819326	 43819815	-	lnc-MRPS18A-2	lnc-MRPS18A-2:4	XLOC_005730	linc-MRPS18A-4	NA	NA	NA	inter
CUST_5883_PI429285431	0.9065094	A	1.0130655	A	0.928802589787789	0	lncRNA	5814-1_{1..545}	"transcript_id ""ENST00000502823.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502823.1"" | genecode_v17"	chr17	 47438527	 47439071	+	ENSG00000248714.2	ENST00000502823.1	RP11-1079K10.3	RP11-1079K10.3-002	ZNF652	NA	chr17:47428527-47439835	inner
CUST_37202_PI429285431	7.728865	P	7.952319	P	0.856512377484952	0	lncRNA	38314-1_{1..834}	n345635|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1184|NULL|-1.3191600|-0.3351893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345635|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1184|NULL|-1.3191600|-0.3351893	chr4	 56804559	 56805392	-	NA	NA	NA	NA	CEP135	NA	chr4:56815037-56824177	inter
CUST_28231_PI429285431	1.0730495	A	1.0234219	A	1.03499772745364	0	lncRNA	29866-1_{1..474}	n325522|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000109453|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000109453|-1.2514900|-0.3677197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325522|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000109453|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000109453|-1.2514900|-0.3677197	chr19	 40589326	 40589799	+	NA	NA	NA	NA	ZNF780A	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10chr19:40579326-40596845"	NA	inner
CUST_6496_PI429285431	6.6246195	P	6.805772	P	0.881998128705768	0	lncRNA	6438-1_{1..815}	"transcript_id ""ENST00000591116.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591116.1"" | genecode_v17"	chr19	 37742824	 37743638	+	ENSG00000226686.3	ENST00000591116.1	AC012309.5	AC012309.5-003	ZNF383	NA	chr19:37732824-37734574	inter
CUST_51095_PI429285431	2.0208004	A	2.4731386	A	0.730857374794077	0	lncRNA	54733-1_{1..854}	hg19_lincRNAsTranscripts_TCONS_l2_00006890 range=chr13:64314447-64317067 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006890 range=chr13:64314447-64317067 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 64314447	 64315300	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33232_PI429285431	2.005466	A	2.2294703	A	0.85618573265293	0	lncRNA	34820-1_{1..2072}	n339930|AK002023|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2379|NULL|1.7766700|-0.2568199	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339930|AK002023|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2379|NULL|1.7766700|-0.2568199	chr18	 77437286	 77439357	-	NA	NA	NA	NA	CTDP1	NA	chr18:77439801-77449358	inter
CUST_9760_PI429285431	0.9059274	A	1.1970236	A	0.817280829765438	0	lncRNA	11278-1_{1..3000}	lnc-KCNV1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNV1-2:6	chr8	112016890	112019889	-	lnc-KCNV1-2	lnc-KCNV1-2:6	XLOC_007182	linc-KCNV1-1	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70"	NA	inter
CUST_19424_PI429285431	5.031219	P	4.673934	P	1.28101289652187	0	lncRNA	21085-1_{1..801}	lnc-SESN3-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SESN3-2:7	chr11	 94703153	 94703953	-	lnc-SESN3-2	lnc-SESN3-2:7	ENSG00000150316.7	CWC15	KDM4D	NA	chr11:94706845-94713662	inner
CUST_46543_PI429285431	7.474429	P	7.387368	P	1.0622040976362	0	lncRNA	50728-2_{3001..4216}	"gi|212274344|ref|NR_015411.1| Homo sapiens uncharacterized LOC254559 (LOC254559), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|212274344|ref|NR_015411.1| Homo sapiens uncharacterized LOC254559 (LOC254559), non-coding RNA"	Chr15	 89924273	 89925488	+	254559	NR_015411.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008079	0.9247043	A	0.9081933	A	1.01151029254286	0	lncRNA	ENST00000424524	NA	AF252280	NA	NA	XLOC_010422	NA	ENST00000424524	NA	NA	"BROAD Institute lincRNA (XLOC_010422), lincRNA [TCONS_00021821]"	chr13:70705091-70705150	hs|13q21.33	Agilent_HUMAN_G3V2	ENST00000424524	ENST00000424524	chr13	 70705091	 70705150	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16264_PI429285431	0.9584311	A	0.9327388	A	1.01796806296897	0	lncRNA	17967-1_{1..700}	lnc-IGSF5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-IGSF5-1:3	chr21	 41101059	 41101758	+	lnc-IGSF5-1	lnc-IGSF5-1:3	XLOC_013946	linc-IGSF5-1	NA	NA	NA	inter
CUST_32851_PI429285431	4.243701	P	4.02104	P	1.16688387885194	0	lncRNA	34484-1_{1..2984}	n339512|AK125019|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1953|NULL|-0.0885469|-0.2982546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339512|AK125019|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1953|NULL|-0.0885469|-0.2982546	chr21	 40778282	 40781265	+	NA	NA	NA	NA	WRB	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_LCA5L:range=chr21:40777808-408004195'pad=0,hg19_refFlat_LCA5L:range=chr21:40777808-408004195'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-60.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00chr21:40768282-40769815"	NA	inner
CUST_5621_PI429285431	0.90331537	A	0.9330451	A	0.979603796325505	0	lncRNA	5549-1_{1..590}	"transcript_id ""ENST00000564561.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564561.1"" | genecode_v17"	chr16	 76141181	 76141770	-	ENSG00000260223.1	ENST00000564561.1	RP11-293N14.1	RP11-293N14.1-002	NA	NA	NA	inter
CUST_21801_PI429285431	2.1612697	A	2.345299	A	0.880241136377422	0	lncRNA	23411-1_{1..299}	lnc-PINK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PINK1-1:1	chr1	 21060293	 21060591	+	lnc-PINK1-1	lnc-PINK1-1:1	ENSG00000233069.1	RP5-930J4.2	HP1BP3	NA	chr1:21069171-21070445	inter
CUST_33791_PI429285431	7.069675	P	7.1000047	P	0.979196495627535	0	lncRNA	35344-1_{1..594}	n340580|AF086453|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3042|NULL|-1.2184700|-0.2599765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340580|AF086453|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3042|NULL|-1.2184700|-0.2599765	chr17	 26865333	 26865926	+	NA	NA	NA	NA	FOXN1	NA	chr17:26855333-26865175	inter
CUST_31688_PI429285431	0.89730847	A	0.8923358	A	1.00345273920931	0	lncRNA	33434-2_{3001..3104}	n338214|BC036212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|606|NULL|-1.0360700|-0.3418029	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338214|BC036212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|606|NULL|-1.0360700|-0.3418029	chr1	146733538	146733641	-	NA	NA	NA	NA	BCL9	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_CHD1L:range=chr1:146724344-1467671905'pad=0,hg19_refFlat_CHD1L:range=chr1:146724344-1467671905'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CHD1L:range=chr1:146726624-1467671905'pad=0,hg19_refFlat_CHD1L:range=chr1:146726624-1467671905'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CHD1L:range=chr1:146714354-1467671905'pad=0,hg19_refFlat_CHD1L:range=chr1:146714354-1467671905'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20chr1:146890733-146999699"	NA	inter
CUST_35030_PI429285431	0.91729766	A	0.9040644	A	1.00921479404576	0	lncRNA	36443-1_{1..402}	n341973|AF169351|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4454|NULL|1.1446700|-0.1824236	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341973|AF169351|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4454|NULL|1.1446700|-0.1824236	chr12	 81062890	 81063291	+	NA	NA	NA	NA	PTPRQ	NA	chr12:81052890-81073968	inner
CUST_15450_PI429285431	0.9147159	A	0.9139426	A	1.00053615439414	0	lncRNA	17138-1_{1..576}	lnc-ACSL1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACSL1-1:2	chr4	185776623	185777198	-	lnc-ACSL1-1	lnc-ACSL1-1:2	XLOC_004208	linc-ACSL1-1	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TVP23C:range=chr17:15406178-154667625'pad=0,hg19_refFlat_TVP23C:range=chr17:15406178-154667625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20"	NA	inter
CUST_27569_PI429285431	0.907858	A	0.89385843	A	1.00975099663704	0	lncRNA	29148-1_{1..3000}	n324769|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206848|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206848|0.9151980|-0.2357284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324769|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206848|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206848|0.9151980|-0.2357284	chr21	 46072302	 46075301	-	NA	NA	NA	NA	TSPEAR	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90chr21:46062302-46090761"	NA	inner
CUST_36676_PI429285431	3.2910702	P	4.219352	P	0.525483802358513	0	lncRNA	37861-2_{3001..3761}	n345167|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_716|NULL|-1.6047000|-0.1740192	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345167|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_716|NULL|-1.6047000|-0.1740192	chr12	  7265893	  7266653	+	NA	NA	NA	NA	C1RL	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40chr12:7252893-7261869"	NA	inter
CUST_49423_PI429285431	0.90762216	A	0.9460405	A	0.973721876309735	0	lncRNA	53226-2_{3001..5120}	hg19_lincRNAsTranscripts_TCONS_l2_00023271 range=chr5:175603837-175626435 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023271 range=chr5:175603837-175626435 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175606837	175608956	-	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00"	NA	inter
CUST_34792_PI429285431	1.1554786	A	0.89510715	A	1.19778705858065	0	lncRNA	36229-1_{1..1705}	n341700|BC043560|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4171|NULL|-1.0446400|-0.4080076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341700|BC043560|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4171|NULL|-1.0446400|-0.4080076	chr9	 75705766	 75707470	-	NA	NA	NA	NA	ANXA1	NA	chr9:75766781-75785307	inner
CUST_24881_PI429285431	0.9201757	A	0.9086658	A	1.00800996421427	0	lncRNA	26422-1_{1..2693}	lnc-GCSH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GCSH-1:1	chr16	 81344336	 81347028	-	lnc-GCSH-1	lnc-GCSH-1:1	ENSG00000260495.1	RP11-55K13.1	GAN	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60chr16:81348571-81357028"	NA	inter
LNCA_21_P0005365	0.92014277	A	0.9050879	A	1.0104898777031	0	lncRNA	ENST00000489284	NA	NA	NA	NA	XLOC_006028	NA	ENST00000489284	NA	NA	"BROAD Institute lincRNA (XLOC_006028), lincRNA [TCONS_00012984]"	chr7:27448452-27448511	hs|7p15.2	Agilent_HUMAN_G3V2	ENST00000489284	ENST00000489284	chr7	 27448452	 27448511	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32029_PI429285431	0.9067817	A	0.89876986	A	1.00556883292987	0	lncRNA	33749-1_{1..611}	n338593|AX785169|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|999|NULL|-0.8772300|-0.2054153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338593|AX785169|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|999|NULL|-0.8772300|-0.2054153	chr8	 82437218	 82437828	+	NA	NA	NA	NA	FABP12	"hg19_refFlat_MRP63:range=chr13:21751056-217513645'pad=0,hg19_refFlat_MRP63:range=chr13:21751056-217513645'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.50;hg19_refFlat_FABP12:range=chr8:82437281-824435505'pad=0,hg19_refFlat_FABP12:range=chr8:82437281-824435505'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20chr8:82433755-82443550"	NA	inner
CUST_24129_PI429285431	4.7997017	P	4.930302	P	0.913451287485184	0	lncRNA	25681-1_{1..340}	lnc-SLURP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLURP1-1:1	chr8	143809013	143809352	-	lnc-SLURP1-1	lnc-SLURP1-1:1	ENSG00000253806.1	CTD-2292P10.2	C8orf55	"hg19_refFlat_THEM6:range=chr8:143808765-1438168575'pad=0,hg19_refFlat_THEM6:range=chr8:143808765-1438168575'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.30chr8:143808621-143818350"	NA	inner
CUST_3855_PI429285431	3.3402421	P	3.4721437	P	0.912627732818168	0	lncRNA	3824-1_{1..2456}	"transcript_id ""ENST00000531479.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531479.1"" | genecode_v17"	chr11	  6384042	  6386497	+	ENSG00000254443.1	ENST00000531479.1	RP11-304C12.3	RP11-304C12.3-001	NA	NA	NA	inter
CUST_48580_PI429285431	1.1229515	A	0.89166087	A	1.17388463277771	0	lncRNA	52428-1_{1..433}	hg19_lincRNAsTranscripts_TCONS_l2_00015234 range=chr2:8231978-8232539 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015234 range=chr2:8231978-8232539 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	  8231978	  8232410	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18859_PI429285431	0.908865	A	0.9051574	A	1.00257321754237	0	lncRNA	20551-1_{1..456}	lnc-AL117340.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AL117340.1-2:1	chr10	 31608444	 31608899	-	lnc-AL117340.1-2	lnc-AL117340.1-2:1	ENSG00000237036	ZEB1-AS1	ZEB1	NA	chr10:31608101-31618810	inner
CUST_30628_PI429285431	2.0650735	A	2.1618698	A	0.935107220035124	0	lncRNA	32410-1_{1..368}	n335973|X72480|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323322|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323322|2.4656200|-0.1241735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335973|X72480|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323322|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323322|2.4656200|-0.1241735	chr2	 89901336	 89901703	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11444_PI429285431	0.8897871	A	0.88537276	A	1.00306447325237	0	lncRNA	13012-2_{3001..3909}	lnc-GPX5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPX5-2:1	chr6	 28600488	 28601396	+	lnc-GPX5-2	lnc-GPX5-2:1	XLOC_005224	linc-LOC100129636-3	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_12896_PI429285431	4.3993526	P	4.719699	P	0.800877558848104	0	lncRNA	14524-1_{1..447}	lnc-ZNF462-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF462-1:5	chr9	109441839	109442285	+	lnc-ZNF462-1	lnc-ZNF462-1:5	XLOC_007502	linc-ZNF462-1	NA	NA	NA	inter
CUST_36616_PI429285431	1.4007627	A	0.93957996	A	1.37666996743419	0	lncRNA	37809-1_{1..1825}	n345112|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_661|NULL|-1.3120900|-0.4969637	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345112|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_661|NULL|-1.3120900|-0.4969637	chr10	 31605457	 31607281	-	NA	NA	NA	NA	ZEB1	NA	chr10:31608101-31617365	inter
LNCA_21_P0010482	0.9226366	A	1.9223897	A	0.500085576341915	0	lncRNA	AL137569	NA	AL137569	NA	Hs.528519	LOC100271722	uncharacterized LOC100271722	NA	THC2493154	NA	"BROAD Institute lincRNA (XLOC_014404), lincRNA [TCONS_00029929]"	chr22:46436952-46436893	hs|22q13.31	Agilent_HUMAN_G3V2	AL137569	AL137569	chr22	 46436893	 46436952	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29315_PI429285431	1.5594523	A	2.001344	A	0.736168691603219	0	lncRNA	31066-1_{1..473}	n332501|DQ925682|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468688|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468688|1.4728900|-0.0792876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332501|DQ925682|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468688|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468688|1.4728900|-0.0792876	chr9	134473664	134474136	-	NA	NA	NA	NA	RAPGEF1	NA	chr9:134463664-134507278	inner
CUST_35817_PI429285431	0.91962516	A	1.1254138	A	0.867064582282511	0	lncRNA	37223-1_{1..881}	n344493|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_41|NULL|-1.3106700|-0.2443718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344493|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_41|NULL|-1.3106700|-0.2443718	chr4	 79567000	 79567880	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37997_PI429285431	2.271004	A	2.1495006	A	1.08786791470506	0	lncRNA	39084-1_{1..1032}	n346557|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2107|NULL|-1.2814400|-0.2047774	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346557|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2107|NULL|-1.2814400|-0.2047774	chr8	144112673	144113704	+	NA	NA	NA	NA	LY6E	NA	chr8:144102673-144103827	inter
CUST_28840_PI429285431	10.861507	P	10.595177	P	1.20274433145394	0	lncRNA	30548-1_{1..585}	n326254|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000089836|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000089836|-1.1830200|-0.4247203	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326254|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000089836|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000089836|-1.1830200|-0.4247203	chr1	209875870	209876454	+	NA	NA	NA	NA	HSD11B1	NA	chr1:209865870-209892832	inner
CUST_28472_PI429285431	0.902147	A	1.0792497	A	0.884477470486684	0	lncRNA	30139-1_{1..422}	n325807|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044027|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044027|-1.1004600|-0.2232980	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325807|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044027|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044027|-1.1004600|-0.2232980	chr13	 19059257	 19059678	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49016_PI429285431	0.9044928	A	1.5239894	A	0.650898006131887	0	lncRNA	52844-1_{1..1433}	hg19_lincRNAsTranscripts_TCONS_l2_00020446 range=chr4:22999214-23123172 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020446 range=chr4:22999214-23123172 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 22999214	 23000646	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40757_PI429285431	4.951153	P	5.4474187	P	0.708939441002119	0	lncRNA	41482-2_{3001..4899}	n410476|NR_037625|lncRNA|Homosapiens||RefGeneNoncode|NR_037625||11.0607000|-0.1548134	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410476|NR_037625|lncRNA|Homosapiens||RefGeneNoncode|NR_037625||11.0607000|-0.1548134	chr6	 32941664	 32943562	+	NA	NA	NA	NA	BRD2	NA	chr6:32936437-32949282	inner
CUST_374_PI429285431	5.8568225	P	6.044161	P	0.878224385993474	0	lncRNA	366-1_{1..480}	"transcript_id ""ENST00000430107.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430107.1"" | genecode_v17"	chr1	117006343	117006822	-	ENSG00000233154.1	ENST00000430107.1	RP4-655J12.4	RP4-655J12.4-006	NA	NA	NA	inter
CUST_36801_PI429285431	0.9354197	A	0.9433092	A	0.994546340808684	0	lncRNA	37973-1_{1..2964}	n345280|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_829|NULL|-1.2988900|-0.3628503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345280|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_829|NULL|-1.2988900|-0.3628503	chr14	 92221775	 92224738	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7312_PI429285431	1.3864745	A	2.1355307	A	0.594992669838861	0	lncRNA	8503-1_{1..301}	"transcript_id ""ENST00000461517.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000461517.2"" | genecode_v17"	chr15	 50536828	 50537128	-	ENSG00000241175.2	ENST00000461517.2	RN7SL494P	RN7SL494P-201	SLC27A2	NA	chr15:50526828-50528589	inner
CUST_36998_PI429285431	1.367177	A	1.3297056	A	1.02631343804155	0	lncRNA	38140-1_{1..493}	n345456|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1005|NULL|-1.2829200|-0.3146197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345456|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1005|NULL|-1.2829200|-0.3146197	chr1	113541551	113542043	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47559_PI429285431	4.21349	P	1.854889	A	5.12872778456802	0	lncRNA	51566-1_{1..1203}	"gi|310124189|ref|XR_110931.1| PREDICTED: Homo sapiens uncharacterized LOC100506661 (LOC100506661), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124189|ref|XR_110931.1| PREDICTED: Homo sapiens uncharacterized LOC100506661 (LOC100506661), misc_RNA"	NA	NA	NA	NA	NA	XR_110931.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007790	0.946627	A	0.9220147	A	1.01720629830449	0	lncRNA	THC2671543	NA	NA	NA	NA	XLOC_010245	NA	NA	THC2671543	NA	"BROAD Institute lincRNA (XLOC_010245), lincRNA [TCONS_00020982]"	chr12:127245553-127245494	hs|12q24.32	Agilent_HUMAN_G3V2	THC2671543	THC2671543	chr12	127245494	127245553	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17898_PI429285431	2.4139714	A	3.0076025	P	0.662672933651615	0	lncRNA	19631-1_{1..331}	lnc-JPH3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JPH3-1:1	chr16	 87617925	 87618255	+	lnc-JPH3-1	lnc-JPH3-1:1	XLOC_011822	linc-JPH3-1	NA	NA	NA	inter
CUST_39143_PI429285431	0.91672	A	0.90749246	A	1.00641654169918	0	lncRNA	40118-2_{3001..3845}	n385763|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dqd.2||0.4045140|-0.3008187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385763|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dqd.2||0.4045140|-0.3008187	chrX	 52111073	 52111917	-	NA	NA	NA	NA	XAGE2B	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.21;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60chrX:52113158-52118734"	NA	inter
CUST_40579_PI429285431	8.045718	P	8.210495	P	0.892066397091505	0	lncRNA	41331-1_{1..1431}	n410025|NR_036462|lncRNA|Homosapiens||RefGeneNoncode|NR_036462||1.8920800|-0.2977930	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410025|NR_036462|lncRNA|Homosapiens||RefGeneNoncode|NR_036462||1.8920800|-0.2977930	chr1	 10490803	 10492233	+	NA	NA	NA	NA	APITD1	NA	chr1:10490159-10502872	inter
CUST_38457_PI429285431	4.892029	P	4.8402905	P	1.03651320769338	0	lncRNA	39477-1_{1..418}	n382905|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002cqa.1||0.2175670|-0.1520006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382905|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002cqa.1||0.2175670|-0.1520006	chr16	  2389290	  2389707	+	NA	NA	NA	NA	ABCA3	NA	chr16:2379290-2390747	inner
CUST_39882_PI429285431	4.200983	P	3.535147	P	1.58648733037931	0	lncRNA	40771-1_{1..3000}	n406544|NR_024052_7|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_7||4.7428800|-0.2834894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n406544|NR_024052_7|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_7||4.7428800|-0.2834894	chr6	 30255173	 30258172	-	NA	NA	NA	NA	TRIM39-RPP21	NA	chr6:30297088-30304927	inter
CUST_15424_PI429285431	0.9150236	A	0.9079186	A	1.00493695753025	0	lncRNA	17109-2_{3001..3118}	lnc-HAND2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HAND2-2:1	chr4	174443130	174443247	-	lnc-HAND2-2	lnc-HAND2-2:1	XLOC_004166	linc-SCRG1	HAND2	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40chr4:174447652-174451378"	NA	inter
CUST_188_PI429285431	0.92952955	A	0.9267282	A	1.00194363426741	0	lncRNA	178-1_{1..614}	"transcript_id ""ENST00000429666.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429666.1"" | genecode_v17"	chr1	 25436949	 25437562	-	ENSG00000233755.1	ENST00000429666.1	RP4-799D16.1	RP4-799D16.1-002	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90"	NA	inter
CUST_31179_PI429285431	0.9091091	A	0.90654194	A	1.00178100382277	0	lncRNA	32974-1_{1..283}	n337610|AB305771|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000409269|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000409269|-0.7252790|-0.1275385	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337610|AB305771|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000409269|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000409269|-0.7252790|-0.1275385	chr14	 22433627	 22433909	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41508_PI429285431	5.702112	P	5.58706	P	1.08301408060657	0	lncRNA	42731-1_{1..97}	ENST00000408363 ncrna:miRNA chromosome:GRCh37:1:231155574:231155670:-1 gene:ENSG00000221290 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408363 ncrna:miRNA chromosome:GRCh37:1:231155574:231155670:-1 gene:ENSG00000221290 gene_biotype:miRNA transcript_biotype:miRNA	chr1	231155574	231155670	-	ENSG00000221290	ENST00000408363	NA	NA	FAM89A	NA	chr1:231154704-231165670	inner
CUST_32813_PI429285431	1.1564362	A	0.9235427	A	1.17518957251806	0	lncRNA	34448-1_{1..631}	n339460|AJ457066|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1898|NULL|2.3528500|-0.2001290	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339460|AJ457066|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1898|NULL|2.3528500|-0.2001290	chr21	 31768523	 31769153	+	NA	NA	NA	NA	KRTAP13-1	NA	chr21:31768392-31769140	inner
LNCA_21_P0002435	5.487627	P	5.320405	P	1.12289419825035	0	lncRNA	THC2682661	NA	NA	NA	NA	XLOC_002080	NA	NA	THC2682661	NA	"BROAD Institute lincRNA (XLOC_002080), lincRNA [TCONS_00004240]"	chr2:045875944-045875885	hs|2p21	Agilent_HUMAN_G3V2	THC2682661	THC2682661	chr2	 45875885	 45875944	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3193_PI429285431	0.9183261	A	0.92064667	A	0.998392796384467	0	lncRNA	3172-1_{1..246}	"transcript_id ""ENST00000524014.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524014.1"" | genecode_v17"	chr8	 78362933	 78363178	+	ENSG00000254366.2	ENST00000524014.1	RP11-38H17.1	RP11-38H17.1-002	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80"	NA	inter
LNCA_33_P3385662	6.974266	P	6.7753425	P	1.14784154707166	0	lncRNA	XR_132601	XR_132601	XR_132601	   441736	Hs.730017	LOC441736	putative golgin subfamily A member 8I-like	NA	NA	NA	"PREDICTED: Homo sapiens putative golgin subfamily A member 8I-like (LOC441736), miscRNA [XR_132601]"	chr15:102312271-102312211	hs|15q26.3	Agilent_HUMAN_G3V2	XR_132601	XR_132601	chr15	102312211	102312271	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43480_PI429285431	8.708813	P	8.308094	P	1.32016568154905	0	lncRNA	48277-2_{3001..6000}	"gi|313851015|ref|NR_037641.1| Homo sapiens HEATR8-TTC4 readthrough (HEATR8-TTC4), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|313851015|ref|NR_037641.1| Homo sapiens HEATR8-TTC4 readthrough (HEATR8-TTC4), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_037641.1	NA	NA	NA	NA	NA	Unknown
CUST_37446_PI429285431	6.9723067	P	6.9812813	P	0.993798589925275	0	lncRNA	38545-1_{1..539}	n345894|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1443|NULL|-1.3328100|-0.1712425	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345894|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1443|NULL|-1.3328100|-0.1712425	chr21	 40383013	 40383551	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2741_PI429285431	13.532015	P	13.180742	P	1.27568576581208	0	lncRNA	2725-1_{1..530}	"transcript_id ""ENST00000510017.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510017.1"" | genecode_v17"	chr7	   331310	   331839	+	ENSG00000248767.1	ENST00000510017.1	WI2-2373I1.2	WI2-2373I1.2-001	LOC100288524	NA	chr7:330136-331454	inner
CUST_48381_PI429285431	1.9910998	A	1.5882361	A	1.32212968976929	0	lncRNA	52234-1_{1..1727}	hg19_lincRNAsTranscripts_TCONS_l2_00000473 range=chr1:108815658-108880726 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000473 range=chr1:108815658-108880726 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	108815658	108817384	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22006_PI429285431	2.9748101	A	3.0400407	A	0.955792531753829	0	lncRNA	23615-1_{1..393}	lnc-C11orf71-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf71-2:1	chr11	114227244	114227636	-	lnc-C11orf71-2	lnc-C11orf71-2:1	ENSG00000256947.1	RP11-64D24.2	NA	NA	NA	inter
CUST_5641_PI429285431	1.7504761	A	1.9238577	A	0.886761721251968	0	lncRNA	5569-1_{1..1338}	"transcript_id ""ENST00000567317.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567317.1"" | genecode_v17"	chr16	 80600691	 80602028	-	ENSG00000260737.1	ENST00000567317.1	RP11-18F14.1	RP11-18F14.1-001	NA	NA	NA	inter
CUST_23222_PI429285431	6.3181667	P	5.6966324	P	1.53851051089304	0	lncRNA	24794-1_{1..614}	lnc-IRX3-4:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRX3-4:15	chr16	 54962406	 54963019	-	lnc-IRX3-4	lnc-IRX3-4:15	ENSG00000245694.4	CRNDE	IRX5	NA	chr16:54965111-54968397	inter
CUST_27186_PI429285431	0.96318835	A	0.9286406	A	1.02423569958519	0	lncRNA	28726-1_{1..719}	n324315|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043020|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043020|-1.1933200|-0.3613646	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324315|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043020|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043020|-1.1933200|-0.3613646	chr6	164044925	164045643	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45834_PI429285431	2.724942	A	3.4159896	P	0.619403912062429	0	lncRNA	50168-1_{1..1352}	"gi|399364214|ref|NR_073079.1| Homo sapiens cornichon homolog 2 (Drosophila) (CNIH2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|399364214|ref|NR_073079.1| Homo sapiens cornichon homolog 2 (Drosophila) (CNIH2), transcript variant 3, non-coding RNA"	Chr11	 66045672	 66047023	+	254263	NR_073079.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0009985	4.8775444	P	4.347289	P	1.44418483663201	0	lncRNA	TCONS_00028250	NA	NA	NA	NA	XLOC_013592	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013592), lincRNA [TCONS_00028250]"	chr20:59050119-59050178	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028250	TCONS_00028250	chr20	 59050119	 59050178	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11505_PI429285431	5.864697	P	6.369002	P	0.704999920530702	0	lncRNA	13074-1_{1..970}	lnc-NACA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NACA2-2:1	chr17	 59476398	 59477367	-	lnc-NACA2-2	lnc-NACA2-2:1	XLOC_012542	linc-APPBP2-2	BCAS3	NA	chr17:59466398-59470199	inter
CUST_17010_PI429285431	0.89990306	A	1.6959577	A	0.575922008543754	0	lncRNA	18721-1_{1..433}	lnc-MT1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MT1A-1:1	chr16	 56678023	 56678455	+	lnc-MT1A-1	lnc-MT1A-1:1	XLOC_011736	linc-MT1B	MT1A	NA	chr16:56672578-56673999	inter
CUST_29149_PI429285431	4.722267	P	5.170312	P	0.73303551367053	0	lncRNA	30892-1_{1..507}	n326659|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000010416|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000010416|-0.8828700|-0.3322085	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326659|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000010416|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000010416|-0.8828700|-0.3322085	chr1	 30654993	 30655499	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42493_PI429285431	9.183515	P	9.235737	P	0.964449764914074	0	lncRNA	45261-1_{1..77}	ENST00000391150 ncrna:snoRNA chromosome:GRCh37:3:52726752:52726828:1 gene:ENSG00000212452 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391150 ncrna:snoRNA chromosome:GRCh37:3:52726752:52726828:1 gene:ENSG00000212452 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	 52726752	 52726828	+	ENSG00000212452	ENST00000391150	NA	NA	PBRM1	NA	chr3:52716752-52719866	inner
CUST_34918_PI429285431	6.2000318	P	4.022042	P	4.52522585746555	0	lncRNA	36340-1_{1..2466}	n341836|AK125103|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4315|NULL|-1.3572300|-0.3568819	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341836|AK125103|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4315|NULL|-1.3572300|-0.3568819	chr12	 14653398	 14655863	+	NA	NA	NA	NA	PLBD1	NA	chr12:14656597-14665865	inter
CUST_30272_PI429285431	11.249495	P	11.525607	P	0.825813552489563	0	lncRNA	32048-1_{1..340}	n335163|AY353240|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000252100|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000252100|0.3226920|-0.0105225	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335163|AY353240|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000252100|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000252100|0.3226920|-0.0105225	chr1	205473787	205474126	+	NA	NA	NA	NA	CDK18	NA	chr1:205473684-205501921	inner
LNCA_21_P0001200	0.92893887	A	0.92444724	A	1.00311821221151	0	lncRNA	ENST00000442108	NA	NA	NA	NA	XLOC_001107	NA	ENST00000442108	NA	NA	"BROAD Institute lincRNA (XLOC_001107), lincRNA [TCONS_00000693]"	chr1:179798803-179798744	hs|1q25.2	Agilent_HUMAN_G3V2	ENST00000442108	ENST00000442108	chr1	179798744	179798803	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3249893	5.6284804	P	6.1004105	P	0.720999368015525	0	lncRNA	XR_108343	XR_108343	XR_108343	   642691	Hs.631791	FLJ37786	uncharacterized LOC642691	NA	THC2480914	NA	"PREDICTED: Homo sapiens hypothetical LOC642691 (FLJ37786), miscRNA [XR_108343]"	chr2:91911606-91911547	hs|2p11.1	Agilent_HUMAN_G3V2	XR_108343	XR_108343	chr2	 91911547	 91911606	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7759_PI429285431	0.9185336	A	1.7687992	A	0.554682609625422	0	lncRNA	9386-1_{1..1573}	lnc-LONRF1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LONRF1-2:1	chr8	 12522787	 12524359	-	lnc-LONRF1-2	lnc-LONRF1-2:1	ENSG00000247397	AC068587.3	LONRF1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-55.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10chr8:12512787-12533137"	NA	inter
CUST_39019_PI429285431	3.7397928	P	4.002323	P	0.83362462494205	0	lncRNA	39998-1_{1..1356}	n385353|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wtv.2||3.6591700|-0.2157181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385353|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wtv.2||3.6591700|-0.2157181	chr8	 11251632	 11252987	+	NA	NA	NA	NA	FAM167A	NA	chr8:11278973-11306166	inter
CUST_15967_PI429285431	2.7421236	A	3.4357812	P	0.618284352696654	0	lncRNA	17665-1_{1..1343}	lnc-CRYL1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYL1-1:2	chr13	 21141065	 21142407	-	lnc-CRYL1-1	lnc-CRYL1-1:2	XLOC_010525	linc-CRYL1	IFT88	"hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30chr13:21141208-21151167"	NA	inter
CUST_1834_PI429285431	1.1537896	A	0.92228186	A	1.17406130301179	0	lncRNA	1823-1_{1..448}	"transcript_id ""ENST00000515649.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515649.1"" | genecode_v17"	chr4	105828563	105829010	+	ENSG00000248373.1	ENST00000515649.1	RP11-556I14.1	RP11-556I14.1-003	NA	NA	NA	inter
CUST_42476_PI429285431	7.4406962	P	7.709465	P	0.830027591525281	0	lncRNA	45234-1_{1..166}	ENST00000516600 ncrna:snoRNA chromosome:GRCh37:3:41729360:41729525:-1 gene:ENSG00000252409 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516600 ncrna:snoRNA chromosome:GRCh37:3:41729360:41729525:-1 gene:ENSG00000252409 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	 41729360	 41729525	-	ENSG00000252409	ENST00000516600	NA	NA	ULK4	NA	chr3:41719360-41739525	inner
CUST_19216_PI429285431	0.9281014	A	0.9334712	A	0.9962848565555	0	lncRNA	20886-1_{1..544}	lnc-AL078585.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL078585.1-1:2	chr6	163472292	163472835	-	lnc-AL078585.1-1	lnc-AL078585.1-1:2	ENSG00000225437.1	RP1-257A15.1	PACRG	NA	chr6:163462292-163482446	inner
CUST_40483_PI429285431	1.0128828	A	0.8982238	A	1.08271910034022	0	lncRNA	41248-1_{1..2609}	n409418|NR_033821|lncRNA|Homosapiens||RefGeneNoncode|NR_033821||-1.2111000|-0.3067352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409418|NR_033821|lncRNA|Homosapiens||RefGeneNoncode|NR_033821||-1.2111000|-0.3067352	chr6	  1887519	  1890127	+	NA	NA	NA	NA	GMDS	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.60;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60chr6:1877519-1915355"	NA	inner
CUST_29829_PI429285431	5.075915	P	6.773216	P	0.308362449831102	0	lncRNA	31592-1_{1..238}	n333666|D63785|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000101688|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000101688|0.8019050|-0.1282642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333666|D63785|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000101688|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000101688|0.8019050|-0.1282642	chr17	 34416039	 34416276	-	NA	NA	NA	NA	CCL3	NA	chr17:34415602-34417506	inner
CUST_41184_PI429285431	2.9632697	A	4.016271	P	0.481964469576119	0	lncRNA	42034-1_{1..94}	ENST00000385046 ncrna:miRNA chromosome:GRCh37:22:18463634:18463727:-1 gene:ENSG00000207780 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385046 ncrna:miRNA chromosome:GRCh37:22:18463634:18463727:-1 gene:ENSG00000207780 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 18463634	 18463727	-	ENSG00000207780	ENST00000385046	NA	NA	MICAL3	NA	chr22:18453634-18473727	inner
CUST_51568_PI429285431	2.1990256	A	3.4860592	P	0.409792759738633	0	lncRNA	55133-1_{1..1170}	hg19_lincRNAsTranscripts_TCONS_l2_00010600 range=chr17:19401354-19410608 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010600 range=chr17:19401354-19410608 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 19401354	 19402523	+	NA	NA	NA	NA	NA	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.31;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10"	NA	inter
CUST_28774_PI429285431	1.6966968	A	1.9915929	A	0.815131034389163	0	lncRNA	30481-1_{1..1373}	n326179|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092701|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092701|-0.2940290|-0.3609228	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326179|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092701|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092701|-0.2940290|-0.3609228	chr1	232848657	232850029	+	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
CUST_39491_PI429285431	8.415274	P	8.327847	P	1.06247360436241	0	lncRNA	40438-1_{1..1590}	n387201|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011abv.1||-0.8001170|-0.2093750	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n387201|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011abv.1||-0.8001170|-0.2093750	chr21	 10453044	 10454633	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30"	NA	inter
CUST_51506_PI429285431	16.952866	P	16.791618	P	1.11825406287813	0	lncRNA	55082-1_{1..440}	hg19_lincRNAsTranscripts_TCONS_l2_00010291 range=chr16:76268918-76269528 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010291 range=chr16:76268918-76269528 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 76268918	 76269357	-	NA	NA	NA	NA	CNTNAP4	NA	chr16:76268915-76279528	inter
CUST_18087_PI429285431	0.91754943	A	0.9199718	A	0.998322349895068	0	lncRNA	19822-1_{1..353}	lnc-PIK3CG-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIK3CG-4:1	chr7	106151672	106152024	+	lnc-PIK3CG-4	lnc-PIK3CG-4:1	XLOC_006197	linc-PIK3CG-4	NA	NA	NA	inter
CUST_22199_PI429285431	0.929511	A	0.9321803	A	0.998151492828672	0	lncRNA	23799-1_{1..945}	lnc-NOC3L-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NOC3L-3:2	chr10	 95868475	 95869419	-	lnc-NOC3L-3	lnc-NOC3L-3:2	ENSG00000232913.1	RP11-429H9.4	PLCE1	NA	chr10:95858475-95878537	inner
LNCA_21_P0008616	0.9529517	A	0.920912	A	1.02245666612713	0	lncRNA	TCONS_00023358	NA	NA	NA	NA	XLOC_011215	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011215), lincRNA [TCONS_00023358]"	chr15:39680926-39680985	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00023358	TCONS_00023358	chr15	 39680926	 39680985	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36056_PI429285431	2.4348755	A	3.0782752	P	0.640202537385398	0	lncRNA	37371-1_{1..3000}	n344653|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_201|NULL|-1.3065500|-0.2698776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n344653|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_201|NULL|-1.3065500|-0.2698776	chr1	 94164463	 94167462	-	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40"	NA	inner
CUST_48620_PI429285431	14.164169	P	13.725681	P	1.3551832986096	0	lncRNA	52467-1_{1..418}	hg19_lincRNAsTranscripts_TCONS_l2_00015391 range=chr2:78015508-78020213 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015391 range=chr2:78015508-78020213 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 78015508	 78015925	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11405_PI429285431	1.7738311	A	1.0712762	A	1.62738421241393	0	lncRNA	12971-1_{1..632}	lnc-BOD1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-BOD1-2:5	chr5	173217812	173218443	-	lnc-BOD1-2	lnc-BOD1-2:5	XLOC_005088	linc-BOD1-2	NA	NA	NA	inter
CUST_45438_PI429285431	7.203592	P	7.0320873	P	1.12623250870451	0	lncRNA	49856-1_{1..2691}	"gi|387942393|ref|NR_049743.1| Homo sapiens ubiquitin related modifier 1 (URM1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387942393|ref|NR_049743.1| Homo sapiens ubiquitin related modifier 1 (URM1), transcript variant 4, non-coding RNA"	Chr9	131133598	131136288	+	81605	NR_049743.1	NA	NA	NA	NA	NA	inter
CUST_8352_PI429285431	2.7946143	A	4.324461	P	0.346314164229715	0	lncRNA	9931-1_{1..601}	lnc-SSR3-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SSR3-3:3	chr3	156469211	156469811	-	lnc-SSR3-3	lnc-SSR3-3:3	ENSG00000240875	RP11-392A22.2	NA	NA	NA	inter
CUST_7527_PI429285431	4.0820827	P	3.8205001	P	1.19879302925381	0	lncRNA	9165-2_{3001..4349}	lnc-NUCB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUCB2-1:1	chr11	 17152161	 17153509	+	lnc-NUCB2-1	lnc-NUCB2-1:1	ENSG00000245502	ENST00000500523	PIK3C2A	"hg19_refFlat_PIK3C2A:range=chr11:17111285-171912885'pad=0,hg19_refFlat_PIK3C2A:range=chr11:17111285-171912885'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20chr11:17139161-17161081"	NA	inner
CUST_42266_PI429285431	6.481788	P	6.4092836	P	1.05154048802734	0	lncRNA	44841-1_{1..109}	ENST00000516815 ncrna:rRNA chromosome:GRCh37:16:34969996:34970104:1 gene:ENSG00000252624 gene_biotype:rRNA transcript_biotype:rRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516815 ncrna:rRNA chromosome:GRCh37:16:34969996:34970104:1 gene:ENSG00000252624 gene_biotype:rRNA transcript_biotype:rRNA	chr16	 34969996	 34970104	+	ENSG00000252624	ENST00000516815	NA	NA	NA	NA	NA	inter
LNCA_21_P0007141	6.6431627	P	6.720931	P	0.947522232536909	0	lncRNA	ENST00000418080	NA	NA	NA	NA	XLOC_009040	NA	ENST00000418080	NA	NA	"BROAD Institute lincRNA (XLOC_009040), lincRNA [TCONS_00019139]"	chr11:5228418-5228477	hs|11p15.4	Agilent_HUMAN_G3V2	ENST00000418080	ENST00000418080	chr11	  5228418	  5228477	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45341_PI429285431	1.2648671	A	2.107401	A	0.55766324781925	0	lncRNA	49779-1_{1..1741}	"gi|224591428|ref|NR_027294.1| Homo sapiens family with sequence similarity 201, member A (FAM201A), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224591428|ref|NR_027294.1| Homo sapiens family with sequence similarity 201, member A (FAM201A), non-coding RNA"	Chr9	 38621085	 38622825	+	158228	NR_027294.1	NA	NA	NA	NA	NA	inter
CUST_42654_PI429285431	4.198981	P	4.131804	P	1.04766465410214	0	lncRNA	45548-1_{1..132}	ENST00000364595 ncrna:snoRNA chromosome:GRCh37:7:137872744:137872875:-1 gene:ENSG00000201465 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364595 ncrna:snoRNA chromosome:GRCh37:7:137872744:137872875:-1 gene:ENSG00000201465 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	137872744	137872875	-	ENSG00000201465	ENST00000364595	NA	NA	NA	NA	NA	inter
CUST_17941_PI429285431	1.0834994	A	1.7655778	A	0.623266726196236	0	lncRNA	19673-1_{1..3000}	lnc-C3orf38-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C3orf38-2:3	chr3	 88514238	 88517237	+	lnc-C3orf38-2	lnc-C3orf38-2:3	XLOC_002727	linc-EPHA3	NA	NA	NA	inter
CUST_24372_PI429285431	2.51057	A	3.6097956	P	0.466766976529448	0	lncRNA	25925-1_{1..483}	lnc-PAFAH1B2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAFAH1B2-1:1	chr11	116978663	116979145	+	lnc-PAFAH1B2-1	lnc-PAFAH1B2-1:1	ENSG00000224077.1	AP000936.4	SIK3	NA	chr11:116968663-116968993	inter
CUST_5953_PI429285431	0.9234111	A	1.0673623	A	0.905037075771345	0	lncRNA	5882-1_{1..458}	"transcript_id ""ENST00000588782.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588782.1"" | genecode_v17"	chr17	 68047519	 68047976	+	ENSG00000267603.1	ENST00000588782.1	RP11-1064E11.1	RP11-1064E11.1-002	KCNJ16	NA	chr17:68071426-68073632	inter
CUST_28409_PI429285431	0.9087076	A	0.90114504	A	1.00525573028972	0	lncRNA	30067-1_{1..731}	n325730|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044966|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044966|-0.3476190|-0.3670386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325730|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044966|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044966|-0.3476190|-0.3670386	chr13	 49993069	 49993799	-	NA	NA	NA	NA	CAB39L	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90chr13:49983069-50009586"	NA	inner
CUST_39769_PI429285431	5.7651467	P	3.9804957	P	3.44535107877974	0	lncRNA	40686-2_{3001..3146}	n405970|NR_003252|lncRNA|Homosapiens||RefGeneNoncode|NR_003252||9.4504000|-0.2941363	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405970|NR_003252|lncRNA|Homosapiens||RefGeneNoncode|NR_003252||9.4504000|-0.2941363	chr10	121581785	121581930	+	NA	NA	NA	NA	INPP5F	"hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90chr10:121568785-121588659"	NA	inner
CUST_22543_PI429285431	5.721689	P	6.172036	P	0.731866796683437	0	lncRNA	24130-1_{1..687}	lnc-PCID2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PCID2-3:1	chr13	113622933	113623619	-	lnc-PCID2-3	lnc-PCID2-3:1	ENSG00000235280.1	MCF2L-AS1	MCF2L	NA	chr13:113623535-113633138	inter
CUST_50986_PI429285431	16.097715	P	16.025042	P	1.05166338308216	0	lncRNA	54629-1_{1..484}	hg19_lincRNAsTranscripts_TCONS_l2_00006603 range=chr12:120807243-120809491 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006603 range=chr12:120807243-120809491 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	120807243	120807726	+	NA	NA	NA	NA	COX6A1	NA	chr12:120809159-120819491	inter
CUST_40539_PI429285431	1.3803864	A	1.2470944	A	1.09679355601756	0	lncRNA	41297-1_{1..1305}	n409661|NR_034061|lncRNA|Homosapiens||RefGeneNoncode|NR_034061||5.4226500|-0.2691418	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409661|NR_034061|lncRNA|Homosapiens||RefGeneNoncode|NR_034061||5.4226500|-0.2691418	chr11	104757417	104758721	-	NA	NA	NA	NA	CASP12	NA	chr11:104756445-104769397	inter
CUST_19776_PI429285431	6.8734064	P	7.0668993	P	0.874485943776101	0	lncRNA	21434-1_{1..2614}	lnc-PHACTR4-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-PHACTR4-2:3	chr1	 28835342	 28837955	+	lnc-PHACTR4-2	lnc-PHACTR4-2:3	ENSG00000242125.1	SNHG3	RCC1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20chr1:28832455-28846145"	NA	inter
CUST_3445_PI429285431	0.9155431	A	0.905539	A	1.00695841173123	0	lncRNA	3416-1_{1..805}	"transcript_id ""ENST00000585998.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585998.1"" | genecode_v17"	chr9	 84887671	 84888475	+	ENSG00000228430.4	ENST00000585998.1	RP11-15B24.5	RP11-15B24.5-002	NA	NA	NA	inter
CUST_47015_PI429285431	11.748569	P	11.95436	P	0.867063163915717	0	lncRNA	51110-1_{1..1309}	"gi|338797715|ref|NR_040024.1| Homo sapiens uncharacterized LOC100131655 (LOC100131655), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338797715|ref|NR_040024.1| Homo sapiens uncharacterized LOC100131655 (LOC100131655), non-coding RNA"	Chr18	 74506688	 74507996	-	100131655	NR_040024.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10"	NA	inter
LNCA_21_P0012293	0.9221575	A	0.90591323	A	1.01132329862282	0	lncRNA	TCONS_l2_00017938	NA	NA	NA	NA	XLOC_l2_009493	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009493), lincRNA [TCONS_l2_00017938]"	chr22:23811549-23804870	hs|22q11.23	Agilent_HUMAN_G3V2	TCONS_l2_00017938	TCONS_l2_00017938	chr22	 23804870	 23811549	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41454_PI429285431	4.791952	P	4.2967787	P	1.40949005631073	0	lncRNA	42635-1_{1..73}	ENST00000580105 ncrna:miRNA chromosome:GRCh37:2:11680731:11680803:-1 gene:ENSG00000264010 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580105 ncrna:miRNA chromosome:GRCh37:2:11680731:11680803:-1 gene:ENSG00000264010 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 11680731	 11680803	-	ENSG00000264010	ENST00000580105	NA	NA	GREB1	NA	chr2:11674242-11690803	inner
CUST_26725_PI429285431	2.745438	A	3.414347	P	0.628982158592888	0	lncRNA	28220-2_{3001..3414}	n4308|D43770|CMPD-associatedncRNA|Homosapiens|CMPD-associatedncRNA|NONCODEv2.0|n4308|NULL|-1.5906100|-0.3255106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n4308|D43770|CMPD-associatedncRNA|Homosapiens|CMPD-associatedncRNA|NONCODEv2.0|n4308|NULL|-1.5906100|-0.3255106	chr17	 70029956	 70030369	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00"	NA	inter
CUST_49369_PI429285431	1.6705976	A	2.053842	A	0.766711433952818	0	lncRNA	53182-1_{1..1079}	hg19_lincRNAsTranscripts_TCONS_l2_00023043 range=chr5:104078844-104109523 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023043 range=chr5:104078844-104109523 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	104078844	104079922	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32394_PI429285431	0.8974614	A	0.89096665	A	1.00451196605506	0	lncRNA	34071-1_{1..3000}	n338985|AK128708|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1413|NULL|-1.0628700|-0.4145767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338985|AK128708|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1413|NULL|-1.0628700|-0.4145767	chr2	157193083	157196082	-	NA	NA	NA	NA	NR4A2	NA	chr2:157183083-157189287	inter
CUST_27295_PI429285431	1.63955	A	1.3333758	A	1.23642454552149	0	lncRNA	28853-1_{1..499}	n324447|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041580|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041580|-1.0860400|-0.3323320	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324447|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041580|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041580|-1.0860400|-0.3323320	chr6	 98265549	 98266047	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4449_PI429285431	3.8896296	P	4.2624893	P	0.772250229654843	0	lncRNA	4399-1_{1..559}	"transcript_id ""ENST00000545885.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000545885.1"" | genecode_v17"	chr12	122237662	122238220	-	ENSG00000212694.4	ENST00000545885.1	AC084018.1	AC084018.1-007	SETD1B	NA	chr12:122242638-122250792	inter
CUST_13595_PI429285431	2.377532	A	1.2379345	A	2.20319547266199	0	lncRNA	15234-1_{1..2078}	lnc-ZCCHC24-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZCCHC24-3:5	chr10	 80737616	 80739693	-	lnc-ZCCHC24-3	lnc-ZCCHC24-3:5	XLOC_008863	linc-POLR3A-1	NA	NA	NA	inter
CUST_38133_PI429285431	4.7215414	P	4.549314	P	1.12679682209618	0	lncRNA	39204-1_{1..1864}	n381274|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gcu.1||3.2743600|-0.2988127	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381274|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gcu.1||3.2743600|-0.2988127	chr1	164595272	164597135	+	NA	NA	NA	NA	PBX1	NA	chr1:164585272-164661720	inner
CUST_11552_PI429285431	1.6282867	A	1.2254703	A	1.32208634331879	0	lncRNA	13125-1_{1..483}	lnc-SNX19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNX19-1:1	chr11	130953279	130953761	-	lnc-SNX19-1	lnc-SNX19-1:1	XLOC_009607	linc-SNX19	NA	NA	NA	inter
CUST_29056_PI429285431	10.34744	P	9.963846	P	1.30458776186553	0	lncRNA	30784-2_{3001..3177}	n326545|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027492|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027492|2.8335300|-0.3011660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326545|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027492|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027492|2.8335300|-0.3011660	chr1	 83817046	 83817222	-	NA	NA	NA	NA	NA	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-26.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-25.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
LNCA_21_P0006725	0.92013603	A	1.2806621	A	0.778880513814977	0	lncRNA	XR_132573	XR_132573	XR_132573	NA	Hs.559870	LOC100652988	uncharacterized LOC100652988	ENST00000454470	THC2623629	NA	"PREDICTED: Homo sapiens hypothetical LOC100652988 (LOC100652988), miscRNA [XR_132573]"	chr10:4277833-4277774	hs|10p15.1	Agilent_HUMAN_G3V2	XR_132573	XR_132573	chr10	  4277774	  4277833	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40739_PI429285431	1.3940756	A	1.2863197	A	1.07755081100997	0	lncRNA	41470-1_{1..2877}	n410450|NR_037592|lncRNA|Homosapiens||RefGeneNoncode|NR_037592||3.4486300|-0.2507851	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410450|NR_037592|lncRNA|Homosapiens||RefGeneNoncode|NR_037592||3.4486300|-0.2507851	chr1	 33476825	 33479701	-	NA	NA	NA	NA	AK2	NA	chr1:33473541-33502512	inter
CUST_2600_PI429285431	1.4352404	A	0.91642916	A	1.43277417613963	0	lncRNA	2587-1_{1..595}	"transcript_id ""ENST00000444910.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444910.1"" | genecode_v17"	chr6	109072857	109073451	+	ENSG00000203801.4	ENST00000444910.1	LINC00222	LINC00222-002	NA	NA	NA	inter
CUST_18484_PI429285431	4.230287	P	4.677747	P	0.733332813319874	0	lncRNA	20203-2_{3001..6000}	lnc-ABCB9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ABCB9-1:1	chr12	123465447	123468446	-	lnc-ABCB9-1	lnc-ABCB9-1:1	ENSG00000256028	RP11-197N18.4	PITPNM2	"hg19_refFlat_ARL6IP4:range=chr12:123464935-1234671335'pad=0,hg19_refFlat_ARL6IP4:range=chr12:123464935-1234671335'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.30;hg19_refFlat_ARL6IP4:range=chr12:123464935-1234672235'pad=0,hg19_refFlat_ARL6IP4:range=chr12:123464935-1234672235'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.30;hg19_refFlat_OGFOD2:range=chr12:123460940-1234638935'pad=0,hg19_refFlat_OGFOD2:range=chr12:123460940-1234638935'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.80chr12:123468027-123476196"	NA	inner
CUST_15905_PI429285431	1.5964195	A	2.0555267	A	0.727436287381009	0	lncRNA	17598-1_{1..1404}	lnc-P2RY6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-P2RY6-1:1	chr11	 72969046	 72970449	+	lnc-P2RY6-1	lnc-P2RY6-1:1	XLOC_009208	linc-P2RY6	P2RY6	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40chr11:72960361-72980234"	NA	inter
CUST_12480_PI429285431	0.9057754	A	0.8987012	A	1.00491550342732	0	lncRNA	14092-1_{1..503}	lnc-PCM1-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCM1-4:5	chr8	 17677867	 17678369	+	lnc-PCM1-4	lnc-PCM1-4:5	XLOC_006726	linc-PCM1	NA	NA	NA	inter
CUST_14375_PI429285431	2.2667696	A	2.3975258	A	0.91335258376916	0	lncRNA	16035-1_{1..207}	lnc-GNAI2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNAI2-1:5	chr3	 50304705	 50304911	+	lnc-GNAI2-1	lnc-GNAI2-1:5	XLOC_002647	linc-SEMA3B	GNAI2	NA	chr3:50294705-50296786	inter
CUST_32784_PI429285431	0.89829135	A	0.89246595	A	1.00404602272415	0	lncRNA	34419-1_{1..317}	n339426|U94386|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1858|NULL|0.0782172|-0.1856312	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n339426|U94386|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1858|NULL|0.0782172|-0.1856312	chrY	  9448329	  9448645	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11266_PI429285431	0.90936756	A	2.1086254	A	0.435499256222888	0	lncRNA	12827-1_{1..369}	lnc-GALC-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GALC-3:4	chr14	 88192299	 88192667	-	lnc-GALC-3	lnc-GALC-3:4	XLOC_011096	linc-SEL1L-7	NA	NA	NA	inter
CUST_31076_PI429285431	1.1797726	A	2.0441988	A	0.549264821373581	0	lncRNA	32867-1_{1..245}	n337317|DQ335648|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391845|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391845|1.1678800|-0.1122542	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337317|DQ335648|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391845|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391845|1.1678800|-0.1122542	chr11	  6292006	  6292250	+	NA	NA	NA	NA	CCKBR	NA	chr11:6282006-6293356	inner
CUST_32456_PI429285431	5.947595	P	3.8083606	P	4.40528207672503	0	lncRNA	34127-1_{1..1806}	n339056|AK130306|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1485|NULL|-1.0846000|-0.3071581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339056|AK130306|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1485|NULL|-1.0846000|-0.3071581	chr2	188328959	188330764	-	NA	NA	NA	NA	TFPI	NA	chr2:188328957-188340769	inner
CUST_49346_PI429285431	2.4412577	A	2.9619398	A	0.697042196708344	0	lncRNA	53159-1_{1..1014}	hg19_lincRNAsTranscripts_TCONS_l2_00023440 range=chr5:74912638-74962641 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023440 range=chr5:74912638-74962641 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 74912638	 74913651	+	NA	NA	NA	NA	POC5	NA	chr5:74970023-74972641	inner
CUST_10312_PI429285431	0.92090577	A	0.9274477	A	0.995475745080307	0	lncRNA	11840-1_{1..900}	lnc-TNFAIP6-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFAIP6-2:3	chr2	151491749	151492648	+	lnc-TNFAIP6-2	lnc-TNFAIP6-2:3	XLOC_001707	linc-TNFAIP6-2	NA	NA	NA	inter
CUST_24431_PI429285431	3.7312915	P	4.493484	P	0.589599620113811	0	lncRNA	25984-1_{1..263}	lnc-AC006035.2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC006035.2-5:1	chr7	 14856021	 14856283	+	lnc-AC006035.2-5	lnc-AC006035.2-5:1	ENSG00000226323.1	AC006150.1	DGKB	NA	chr7:14846021-14866190	inner
CUST_38943_PI429285431	0.92538023	A	0.9260016	A	0.999569391874718	0	lncRNA	39930-2_{3001..4320}	n385094|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003sya.2||0.7382050|-0.3245939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385094|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003sya.2||0.7382050|-0.3245939	chr7	 26575739	 26577058	-	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80"	NA	inter
CUST_25086_PI429285431	5.8758807	P	5.9085255	P	0.977626434157783	0	lncRNA	26623-1_{1..2194}	lnc-B4GALNT3-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-B4GALNT3-2:3	chr12	   753125	   755318	+	lnc-B4GALNT3-2	lnc-B4GALNT3-2:3	ENSG00000177406.4	RP11-218M22.1	NINJ2	NA	chr12:743125-764581	inner
CUST_6532_PI429285431	1.2609022	A	0.9235442	A	1.26344074158856	0	lncRNA	6475-1_{1..556}	"transcript_id ""ENST00000595680.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595680.1"" | genecode_v17"	chr19	 44298461	 44299016	-	ENSG00000268601.1	ENST00000595680.1	AC115522.3	AC115522.3-001	LYPD5	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr19:44300079-44309810"	NA	inter
CUST_19532_PI429285431	4.4752626	P	4.5871253	P	0.925392492625243	0	lncRNA	21188-1_{1..478}	lnc-TK2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TK2-1:2	chr16	 66510167	 66510644	-	lnc-TK2-1	lnc-TK2-1:2	ENSG00000261656.1	CTD-2258A20.5	BEAN1	"hg19_refFlat_BEAN1:range=chr16:66471580-665148285'pad=0,hg19_refFlat_BEAN1:range=chr16:66471580-665148285'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.10chr16:66500167-66520305"	NA	inner
CUST_35990_PI429285431	0.8942643	A	0.88889277	A	1.00373020082097	0	lncRNA	37330-1_{1..3000}	n344605|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_153|NULL|-1.5217100|-0.2534201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344605|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_153|NULL|-1.5217100|-0.2534201	chr2	239438308	239441307	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00"	NA	inter
CUST_8270_PI429285431	4.4345226	P	4.541929	P	0.928255330575266	0	lncRNA	9855-1_{1..1624}	lnc-RALB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RALB-1:1	chr2	120976770	120978393	+	lnc-RALB-1	lnc-RALB-1:1	ENSG00000249674	ENST00000512879	TMEM185B	NA	chr2:120972914-120980984	inner
CUST_37426_PI429285431	2.0503716	A	2.7648978	A	0.609405235660846	0	lncRNA	38531-1_{1..636}	n345880|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1429|NULL|-1.3024400|-0.2289330	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345880|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1429|NULL|-1.3024400|-0.2289330	chr7	130737183	130737818	+	NA	NA	NA	NA	MKLN1	NA	chr7:130794855-130802983	inter
CUST_14153_PI429285431	1.8901874	A	2.519146	A	0.6466430219353	0	lncRNA	15804-1_{1..1302}	lnc-C15orf2-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-C15orf2-2:12	chr15	 24832714	 24834015	+	lnc-C15orf2-2	lnc-C15orf2-2:12	XLOC_011181	linc-C15orf2-1	NA	NA	NA	inter
CUST_9215_PI429285431	5.808165	P	5.6816196	P	1.09167649913835	0	lncRNA	10726-1_{1..2483}	lnc-PAPLN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAPLN-1:1	chr14	 73751885	 73754367	+	lnc-PAPLN-1	lnc-PAPLN-1:1	ENSG00000248570	ENST00000504856	NUMB	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_NUMB:range=chr14:73743286-738224595'pad=0,hg19_refFlat_NUMB:range=chr14:73743286-738224595'pad=0 3'pad=0 strand=- repeatMasking=none,-100.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20chr14:73741918-73762205"	NA	inner
CUST_31439_PI429285431	6.5436773	P	5.656691	P	1.84930899489059	0	lncRNA	33208-1_{1..1410}	n337907|BC016780|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|290|NULL|-1.1407600|-0.4192221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337907|BC016780|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|290|NULL|-1.1407600|-0.4192221	chr1	 46103194	 46104603	-	NA	NA	NA	NA	GPBP1L1	NA	chr1:46093194-46114558	inner
CUST_30096_PI429285431	0.9239305	A	1.2125006	A	0.818713108630619	0	lncRNA	31868-1_{1..308}	n334633|U88357|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000222077|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000222077|0.4891320|-0.2568067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334633|U88357|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000222077|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000222077|0.4891320|-0.2568067	chr12	 56482413	 56482720	+	NA	NA	NA	NA	ERBB3	NA	chr12:56473809-56492813	inner
CUST_26529_PI429285431	0.9119418	A	0.90612525	A	1.00403986357077	0	lncRNA	28036-1_{1..1603}	lnc-UBASH3A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBASH3A-1:1	chr21	 43916933	 43918535	+	lnc-UBASH3A-1	lnc-UBASH3A-1:1	ENSG00000239930.1	AP001625.4	RSPH1	"hg19_refFlat_RSPH1:range=chr21:43892928-439162965'pad=0,hg19_refFlat_RSPH1:range=chr21:43892928-439162965'pad=0 3'pad=0 strand=- repeatMasking=none,-95.10chr21:43906933-43916401"	NA	inter
CUST_6587_PI429285431	2.9435663	P	2.844633	P	1.070981307457	0	lncRNA	6535-1_{1..847}	"transcript_id ""ENST00000596330.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596330.1"" | genecode_v17"	chr19	 55100906	 55101752	+	ENSG00000269271.1	ENST00000596330.1	CTB-83J4.2	CTB-83J4.2-001	LILRA1	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-24.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30chr19:55105113-55111752"	NA	inter
CUST_13987_PI429285431	3.0756757	P	3.6189275	P	0.686222435712596	0	lncRNA	15632-1_{1..1149}	lnc-ANKRD27-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD27-5:1	chr19	 32516621	 32517769	-	lnc-ANKRD27-5	lnc-ANKRD27-5:1	XLOC_013297	linc-TSHZ3-3	NA	NA	NA	inter
LNCA_19_P00322930	5.2207155	P	5.9230623	P	0.614571683012949	0	lncRNA	XR_108543	XR_108543	XR_108543	NA	NA	LOC100507376	NA	NA	THC2666657	NA	"PREDICTED: Homo sapiens hypothetical LOC100507376, transcript variant 1 (LOC100507376), miscRNA [XR_108543]"	chr4:6675594-6675535	hs|4p16.1	Agilent_HUMAN_G3V2	XR_108543	XR_108543	chr4	  6675535	  6675594	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13441_PI429285431	5.7986307	P	5.882799	P	0.943328198949471	0	lncRNA	15079-2_{3001..5835}	lnc-SULF2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SULF2-4:1	chr20	 46757811	 46760645	-	lnc-SULF2-4	lnc-SULF2-4:1	XLOC_013773	linc-SULF2-5	NA	NA	NA	inter
CUST_10246_PI429285431	8.459927	P	8.78661	P	0.79736766102071	0	lncRNA	11772-1_{1..492}	lnc-TMED5-1:21	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMED5-1:21	chr1	 93802934	 93803425	-	lnc-TMED5-1	lnc-TMED5-1:21	XLOC_000918	linc-TMED5	DR1	NA	chr1:93811478-93812994	inter
CUST_46107_PI429285431	5.443394	P	5.5037823	P	0.959005969040656	0	lncRNA	50369-1_{1..719}	"gi|397139452|ref|XR_110325.2| PREDICTED: Homo sapiens uncharacterized LOC100507559 (LOC100507559), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139452|ref|XR_110325.2| PREDICTED: Homo sapiens uncharacterized LOC100507559 (LOC100507559), misc_RNA"	NA	NA	NA	NA	NA	XR_110325.2	NA	NA	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-29.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40"	NA	Unknown
CUST_36261_PI429285431	0.91688865	A	1.0510756	A	0.911183198345592	0	lncRNA	37500-2_{3001..6000}	n344793|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_342|NULL|-1.3348700|-0.3926699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344793|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_342|NULL|-1.3348700|-0.3926699	chr5	 27475375	 27478374	+	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80"	NA	inter
CUST_34725_PI429285431	1.4524568	A	0.9107631	A	1.45568045924176	0	lncRNA	36170-2_{3001..5781}	n341630|CR627188|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4101|NULL|5.0421200|-0.2349764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341630|CR627188|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4101|NULL|5.0421200|-0.2349764	chr8	143786669	143789449	-	NA	NA	NA	NA	C8orf55	"hg19_refFlat_LY6K:range=chr8:143781946-1437844075'pad=0,hg19_refFlat_LY6K:range=chr8:143781946-1437844075'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_LY6K:range=chr8:143781946-1437847895'pad=0,hg19_refFlat_LY6K:range=chr8:143781946-1437847895'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.50;hg19_refFlat_LY6K:range=chr8:143781946-1437846415'pad=0,hg19_refFlat_LY6K:range=chr8:143781946-1437846415'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70chr8:143808621-143818350"	NA	inter
CUST_6466_PI429285431	2.8119078	A	3.4368234	P	0.648457712043851	0	lncRNA	6408-1_{1..646}	"transcript_id ""ENST00000587150.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587150.1"" | genecode_v17"	chr19	 35282724	 35283369	-	ENSG00000267767.1	ENST00000587150.1	CTC-523E23.4	CTC-523E23.4-002	NA	NA	NA	inter
LNCA_21_P0002507	1.0023286	A	0.93459225	A	1.04807092488294	0	lncRNA	TCONS_00004459	NA	NA	NA	NA	XLOC_002334	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002334), lincRNA [TCONS_00004459]"	chr2:136843528-136843469	hs|2q22.1	Agilent_HUMAN_G3V2	TCONS_00004459	TCONS_00004459	chr2	136843469	136843528	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13641_PI429285431	1.1230323	A	0.9042966	A	1.1637133239885	0	lncRNA	15279-1_{1..372}	lnc-DBC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DBC1-1:1	chr9	121494992	121495363	-	lnc-DBC1-1	lnc-DBC1-1:1	XLOC_007842	linc-ASTN2-2	NA	NA	NA	inter
CUST_14736_PI429285431	2.279408	A	1.56305	A	1.64302906314674	0	lncRNA	16400-1_{1..852}	lnc-RAD23B-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAD23B-5:2	chr9	110276945	110277796	+	lnc-RAD23B-5	lnc-RAD23B-5:2	XLOC_007507	linc-ACTL7A-9	NA	NA	NA	inter
CUST_46880_PI429285431	3.0895271	A	4.64304	P	0.340679513547039	0	lncRNA	51005-3_{6001..7867}	"gi|373838810|ref|NR_046057.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 33, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373838810|ref|NR_046057.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 33, non-coding RNA"	Chr17	 48644429	 48646295	+	8913	NR_046057.1	NA	NA	NA	NA	NA	inter
CUST_41585_PI429285431	0.92391026	A	0.9213661	A	1.00176503317147	0	lncRNA	42913-1_{1..129}	ENST00000385138 ncrna:miRNA chromosome:GRCh37:X:146294981:146295109:-1 gene:ENSG00000207873 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385138 ncrna:miRNA chromosome:GRCh37:X:146294981:146295109:-1 gene:ENSG00000207873 gene_biotype:miRNA transcript_biotype:miRNA	chrX	146294981	146295109	-	ENSG00000207873	ENST00000385138	NA	NA	NA	NA	NA	inter
CUST_1600_PI429285431	4.581443	P	4.8059483	P	0.855888459446427	0	lncRNA	1586-1_{1..589}	"transcript_id ""ENST00000417384.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417384.1"" | genecode_v17"	chr3	187514043	187514631	+	ENSG00000224049.1	ENST00000417384.1	RP11-30O15.1	RP11-30O15.1-002	NA	NA	NA	inter
CUST_19295_PI429285431	1.7377927	A	0.91896486	A	1.76397221911575	0	lncRNA	20962-1_{1..1966}	lnc-NSUN6-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-NSUN6-5:1	chr10	 18299458	 18301423	-	lnc-NSUN6-5	lnc-NSUN6-5:1	ENSG00000226083.1	RP11-110H10.2	SLC39A12	"hg19_refFlat_SLC39A12:range=chr10:18242206-183317625'pad=0,hg19_refFlat_SLC39A12:range=chr10:18242206-183317625'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30chr10:18289458-18309491"	NA	inner
CUST_50350_PI429285431	9.029211	P	8.958579	P	1.05017663271733	0	lncRNA	54064-1_{1..1137}	hg19_lincRNAsTranscripts_TCONS_l2_00029133 range=chr9:139440710-139444183 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029133 range=chr9:139440710-139444183 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	139440710	139441846	+	NA	NA	NA	NA	NOTCH1	NA	chr9:139430710-139440238	inter
CUST_13183_PI429285431	1.6141948	A	1.3748106	A	1.18048867405067	0	lncRNA	14810-1_{1..238}	lnc-NRSN1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NRSN1-2:2	chr6	 23404092	 23404329	+	lnc-NRSN1-2	lnc-NRSN1-2:2	XLOC_005202	linc-NRSN1-2	NA	NA	NA	inter
CUST_39489_PI429285431	4.002856	P	4.501679	P	0.707683898487994	0	lncRNA	40436-1_{1..2218}	n387194|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010zvh.1||5.3976500|-0.1244344	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387194|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010zvh.1||5.3976500|-0.1244344	chr20	 34188484	 34190701	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013295	1.0229273	A	0.95193255	A	1.05044072142617	0	lncRNA	TCONS_l2_00026506	NA	NA	NA	NA	XLOC_l2_013783	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013783), lincRNA [TCONS_l2_00026506]"	chr7:35771780-35771721	hs|7p14.2	Agilent_HUMAN_G3V2	TCONS_l2_00026506	TCONS_l2_00026506	chr7	 35771721	 35771780	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22398_PI429285431	2.2743545	A	1.9943476	A	1.21420069155768	0	lncRNA	23987-1_{1..701}	lnc-TCL1B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCL1B-2:2	chr14	 96221582	 96222282	+	lnc-TCL1B-2	lnc-TCL1B-2:2	ENSG00000257275.2	RP11-164H13.1	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TCL1A:range=chr14:96178092-961804035'pad=0,hg19_refFlat_TCL1A:range=chr14:96178092-961804035'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00"	NA	inter
CUST_33191_PI429285431	8.681132	P	8.642427	P	1.02719137943481	0	lncRNA	34783-1_{1..1517}	n339884|CR608159|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2332|NULL|-1.0980700|-0.3778103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339884|CR608159|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2332|NULL|-1.0980700|-0.3778103	chr18	 52394574	 52396090	+	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40"	NA	inter
CUST_2907_PI429285431	0.92070776	A	0.9179182	A	1.00193544621183	0	lncRNA	2888-1_{1..746}	"transcript_id ""ENST00000419905.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419905.1"" | genecode_v17"	chr7	114719052	114719797	+	ENSG00000225535.2	ENST00000419905.1	AC068610.3	AC068610.3-002	NA	NA	NA	inter
CUST_51602_PI429285431	6.148692	P	6.1637053	P	0.98964753295357	0	lncRNA	55168-1_{1..233}	hg19_lincRNAsTranscripts_TCONS_l2_00010643 range=chr17:26075315-26081142 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010643 range=chr17:26075315-26081142 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 26075315	 26075547	+	NA	NA	NA	NA	NOS2	NA	chr17:26083792-26091142	inter
CUST_43162_PI429285431	0.9410994	A	1.6435188	A	0.614540757016602	0	lncRNA	47977-1_{1..855}	ENST00000597755 havana:sense_intronic chromosome:GRCh37:17:40422535:40423389:-1 gene:ENSG00000236194 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000597755 havana:sense_intronic chromosome:GRCh37:17:40422535:40423389:-1 gene:ENSG00000236194 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr17	 40422535	 40423389	-	ENSG00000236194	ENST00000597755	NA	NA	STAT5B	NA	chr17:40412535-40428424	inner
CUST_6501_PI429285431	5.114836	P	2.8597705	A	4.77355969226063	0	lncRNA	6443-1_{1..654}	"transcript_id ""ENST00000591976.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591976.1"" | genecode_v17"	chr19	 37978901	 37979554	+	ENSG00000267381.1	ENST00000591976.1	CTD-2086O20.3	CTD-2086O20.3-001	ZNF570	NA	chr19:37968901-37976242	inter
CUST_7022_PI429285431	1.2721186	A	1.4368086	A	0.892120193711356	0	lncRNA	6969-1_{1..580}	"transcript_id ""ENST00000419566.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000419566.1"" | genecode_v17"	chrX	 13353360	 13353939	+	ENSG00000226985.1	ENST00000419566.1	RP11-142G7.2	RP11-142G7.2-001	NA	NA	NA	inter
CUST_38417_PI429285431	0.9178592	A	1.0968124	A	0.883343706057624	0	lncRNA	39447-1_{1..1821}	n382490|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zhb.2||4.3542500|-0.3143151	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382490|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zhb.2||4.3542500|-0.3143151	chr15	 32962079	 32963899	+	NA	NA	NA	NA	SCG5	NA	chr15:32952079-32973900	inner
CUST_51207_PI429285431	3.3216894	P	3.6341858	P	0.805247175329433	0	lncRNA	54825-1_{1..926}	hg19_lincRNAsTranscripts_TCONS_l2_00008525 range=chr15:30800618-30808756 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008525 range=chr15:30800618-30808756 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 30800618	 30801543	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19403_PI429285431	1.6841166	A	1.7587372	A	0.949591811810167	0	lncRNA	21065-1_{1..391}	lnc-ATIC-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATIC-8:2	chr2	215887616	215888006	+	lnc-ATIC-8	lnc-ATIC-8:2	ENSG00000227769.2	AC072062.3	ABCA12	NA	chr2:215877616-215897842	inner
CUST_39653_PI429285431	0.9183589	A	0.99298537	A	0.9495879481436	0	lncRNA	40592-1_{1..555}	n405230|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000328927||-1.1091200|-0.1510894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405230|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000328927||-1.1091200|-0.1510894	chr2	 97435686	 97436240	-	NA	NA	NA	NA	CNNM4	NA	chr2:97426639-97448109	inner
CUST_19103_PI429285431	5.050277	P	3.828457	P	2.33240771509257	0	lncRNA	20792-1_{1..3000}	lnc-AC012652.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-AC012652.1.1-2:1	NA	NA	     2999	NA	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.14;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70"	NA	Unknown
LNCA_33_P3288969	0.9465323	A	0.925727	A	1.0145256212694	0	lncRNA	XR_132793	XR_132793	XR_132793	100652967	NA	LOC100652967	6.8 kDa mitochondrial proteolipid-like	NA	THC2673793	NA	"PREDICTED: Homo sapiens 6.8 kDa mitochondrial proteolipid-like (LOC100652967), miscRNA [XR_132793]"	chr1:53390845-53390786	hs|1p32.3	Agilent_HUMAN_G3V2	XR_132793	XR_132793	chr1	 53390786	 53390845	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26873_PI429285431	1.8687773	A	2.4189746	A	0.682926726339214	0	lncRNA	28390-1_{1..829}	n323948|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054768|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054768|-0.9446280|-0.3419495	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323948|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054768|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054768|-0.9446280|-0.3419495	chr9	133681399	133682227	+	NA	NA	NA	NA	ABL1	NA	chr9:133671399-133696196	inner
CUST_9095_PI429285431	5.5628653	P	5.923631	P	0.778751153394037	0	lncRNA	10617-1_{1..3000}	lnc-CYGB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CYGB-1:1	chr17	 74485799	 74488798	-	lnc-CYGB-1	lnc-CYGB-1:1	ENSG00000250233	AC015802.1	RHBDF2	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-61.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50chr17:74475799-74497509"	NA	inner
CUST_40641_PI429285431	0.95963806	A	0.9720909	A	0.991405494809773	0	lncRNA	41380-1_{1..1692}	n410160|NR_036635|lncRNA|Homosapiens||RefGeneNoncode|NR_036635||0.8611360|-0.3109421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410160|NR_036635|lncRNA|Homosapiens||RefGeneNoncode|NR_036635||0.8611360|-0.3109421	chr2	 63344985	 63346676	-	NA	NA	NA	NA	WDPCP	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-23.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00chr2:63348518-63356677"	NA	inter
CUST_37130_PI429285431	3.0111403	A	2.3883667	A	1.53983268584374	0	lncRNA	38253-1_{1..1397}	n345571|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1120|NULL|-1.4127000|-0.2493347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345571|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1120|NULL|-1.4127000|-0.2493347	chr2	224711264	224712660	+	NA	NA	NA	NA	AP1S3	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00chr2:224701264-224702319"	NA	inter
LNCA_21_P0013476	6.7318106	P	6.933468	P	0.86955102979062	0	lncRNA	TCONS_l2_00027747	NA	NA	NA	NA	XLOC_l2_014196	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014196), lincRNA [TCONS_l2_00027747]"	chr8:49277964-49278023	hs|8q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00027747	TCONS_l2_00027747	chr8	 49277964	 49278023	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47952_PI429285431	4.666648	P	3.6992497	P	1.95531128167046	0	lncRNA	51843-2_{3001..4113}	"gi|410172547|ref|XR_171850.1| PREDICTED: Homo sapiens supervillin pseudogene (LOC645954), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172547|ref|XR_171850.1| PREDICTED: Homo sapiens supervillin pseudogene (LOC645954), misc_RNA"	NA	NA	NA	NA	NA	XR_171850.1	NA	NA	NA	NA	NA	Unknown
CUST_28331_PI429285431	1.1542499	A	0.90162027	A	1.19137668399158	0	lncRNA	29976-1_{1..739}	n325636|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045725|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045725|-1.1637000|-0.4494591	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325636|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045725|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045725|-1.1637000|-0.4494591	chr13	105827140	105827878	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10422_PI429285431	0.9152937	A	0.9052385	A	1.00699407864951	0	lncRNA	11950-1_{1..475}	lnc-UTRN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UTRN-2:1	chr6	145475560	145476034	+	lnc-UTRN-2	lnc-UTRN-2:1	XLOC_005493	linc-GRM1	NA	NA	NA	inter
CUST_40697_PI429285431	0.92489636	A	1.1045097	A	0.882939603246422	0	lncRNA	41434-1_{1..1360}	n410257|NR_037174_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037174_2||-0.2355440|-0.3419822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410257|NR_037174_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037174_2||-0.2355440|-0.3419822	chr6	  4043969	  4045328	+	NA	NA	NA	NA	PRPF4B	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80chr6:4033969-4056384"	NA	inner
LNCA_21_P0007407	11.222664	P	10.941694	P	1.21501152618791	0	lncRNA	TCONS_00019776	NA	NA	NA	NA	XLOC_009575	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009575), lincRNA [TCONS_00019776]"	chr11:118789547-118789488	hs|11q23.3	Agilent_HUMAN_G3V2	TCONS_00019776	TCONS_00019776	chr11	118789488	118789547	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14536_PI429285431	3.09509	P	2.9851046	P	1.07921731482515	0	lncRNA	16204-1_{1..918}	lnc-ANKRD18B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD18B-1:1	chr9	 33584785	 33585702	+	lnc-ANKRD18B-1	lnc-ANKRD18B-1:1	XLOC_007323	linc-PRSS3-4	NA	NA	NA	inter
CUST_21701_PI429285431	0.92611563	A	0.9233401	A	1.00192570258233	0	lncRNA	23312-1_{1..325}	lnc-AIPL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AIPL1-2:1	chr17	  6093774	  6094098	-	lnc-AIPL1-2	lnc-AIPL1-2:1	ENSG00000262231.1	RP11-960B9.2	NA	NA	NA	inter
CUST_25233_PI429285431	1.9259366	A	2.0177054	A	0.938371563776135	0	lncRNA	26764-1_{1..477}	lnc-GDF5-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GDF5-1:4	chr20	 34068958	 34069434	-	lnc-GDF5-1	lnc-GDF5-1:4	ENSG00000230155.1	RP3-477O4.14	CEP250	"hg19_refFlat_CEP250:range=chr20:34050193-340994555'pad=0,hg19_refFlat_CEP250:range=chr20:34050193-340994555'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chr20:34058958-34079012"	NA	inner
CUST_7854_PI429285431	0.9160389	A	0.9041811	A	1.00825307099938	0	lncRNA	9478-1_{1..3000}	lnc-IL34-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-IL34-3:1	chr16	 70838337	 70841336	+	lnc-IL34-3	lnc-IL34-3:1	ENSG00000251103	XLOC_011772	VAC14	NA	chr16:70828337-70835061	inter
CUST_15134_PI429285431	1.8939612	A	0.9091989	A	1.97898722588575	0	lncRNA	16795-1_{1..727}	lnc-SH3BP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SH3BP2-1:1	chr4	  2770931	  2771657	+	lnc-SH3BP2-1	lnc-SH3BP2-1:1	XLOC_003425	linc-SH3BP2	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	inter
CUST_17559_PI429285431	2.089999	A	1.7881926	A	1.23268689604905	0	lncRNA	19287-1_{1..685}	lnc-TMEM189-UBE2V1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM189-UBE2V1-2:1	chr20	 48646251	 48646935	-	lnc-TMEM189-UBE2V1-2	lnc-TMEM189-UBE2V1-2:1	XLOC_013786	linc-SPATA2-3	NA	NA	NA	inter
CUST_45628_PI429285431	1.4869481	A	0.9023654	A	1.49960516527537	0	lncRNA	50011-1_{1..1916}	"gi|310120528|ref|XR_110423.1| PREDICTED: Homo sapiens uncharacterized LOC100131132 (LOC100131132), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120528|ref|XR_110423.1| PREDICTED: Homo sapiens uncharacterized LOC100131132 (LOC100131132), misc_RNA"	NA	NA	NA	NA	NA	XR_110423.1	NA	NA	NA	"hg19_refFlat_DLG5:range=chr10:79552198-796862785'pad=0,hg19_refFlat_DLG5:range=chr10:79552198-796862785'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30"	NA	Unknown
CUST_43228_PI429285431	1.0025724	A	1.2974007	A	0.815169342681079	0	lncRNA	48043-1_{1..454}	ENST00000602426 havana:sense_intronic chromosome:GRCh37:6:106548015:106548468:1 gene:ENSG00000269919 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602426 havana:sense_intronic chromosome:GRCh37:6:106548015:106548468:1 gene:ENSG00000269919 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr6	106548015	106548468	+	ENSG00000269919	ENST00000602426	NA	NA	PRDM1	NA	chr6:106538015-106557814	inner
CUST_40472_PI429285431	5.437207	P	5.4284744	P	1.00607133335269	0	lncRNA	41241-1_{1..1028}	n409404|NR_033800|lncRNA|Homosapiens||RefGeneNoncode|NR_033800||4.1633700|-0.1781407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n409404|NR_033800|lncRNA|Homosapiens||RefGeneNoncode|NR_033800||4.1633700|-0.1781407	chr21	 40685860	 40686887	-	NA	NA	NA	NA	BRWD1	NA	chr21:40675860-40685712	inter
CUST_9346_PI429285431	4.7141747	P	5.0595016	P	0.787129600811591	0	lncRNA	10852-1_{1..375}	lnc-UMODL1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UMODL1-4:2	chr21	 43194276	 43194650	+	lnc-UMODL1-4	lnc-UMODL1-4:2	XLOC_013950	linc-UMODL1-2	RIPK4	NA	chr21:43184276-43187249	inter
CUST_11012_PI429285431	5.270168	P	5.779233	P	0.702677690551259	0	lncRNA	12557-1_{1..552}	lnc-FSIP1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FSIP1-4:2	chr15	 39811912	 39812463	-	lnc-FSIP1-4	lnc-FSIP1-4:2	XLOC_011437	linc-RASGRP1-3	NA	NA	NA	inter
CUST_47306_PI429285431	6.750968	P	6.7703505	P	0.986654920573457	0	lncRNA	51370-1_{1..3000}	"gi|386781512|ref|NR_048539.1| Homo sapiens solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 (SLC9A8), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386781512|ref|NR_048539.1| Homo sapiens solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 (SLC9A8), transcript variant 5, non-coding RNA"	Chr20	 48429250	 48432249	+	23315	NR_048539.1	NA	NA	NA	NA	NA	inter
CUST_4640_PI429285431	0.9523178	A	0.9502176	A	1.00145680782367	0	lncRNA	4586-1_{1..611}	"transcript_id ""ENST00000415120.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415120.1"" | genecode_v17"	chr13	 67946519	 67947129	+	ENSG00000230040.1	ENST00000415120.1	LINC00364	LINC00364-001	NA	NA	NA	inter
CUST_17057_PI429285431	1.3941638	A	1.5929226	A	0.871299850060974	0	lncRNA	18766-1_{1..722}	lnc-TCP11L2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCP11L2-1:2	chr12	106645908	106646629	+	lnc-TCP11L2-1	lnc-TCP11L2-1:2	XLOC_009869	linc-TCP11L2-1	CKAP4	"hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr12:106635908-106641713"	NA	inter
CUST_12318_PI429285431	0.92585135	A	0.92541724	A	1.00030094739814	0	lncRNA	13931-1_{1..285}	lnc-CES1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CES1-1:4	chr16	 55470385	 55470669	-	lnc-CES1-1	lnc-CES1-1:4	XLOC_011952	linc-IRX3-4	NA	NA	NA	inter
CUST_23645_PI429285431	1.1143079	A	1.5298483	A	0.749738607398586	0	lncRNA	25210-1_{1..471}	lnc-CCDC34-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC34-1:4	chr11	 27240206	 27240676	-	lnc-CCDC34-1	lnc-CCDC34-1:4	ENSG00000254560.1	RP11-1L12.3	NA	NA	NA	inter
LNCA_21_P0003465	0.9276462	A	0.9116422	A	1.01115488436405	0	lncRNA	ENST00000507808	NA	NA	NA	NA	XLOC_003960	NA	ENST00000507808	NA	NA	"BROAD Institute lincRNA (XLOC_003960), lincRNA [TCONS_00007762]"	chr4:58471923-58471864	hs|4q12	Agilent_HUMAN_G3V2	ENST00000507808	ENST00000507808	chr4	 58471864	 58471923	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8823_PI429285431	4.175878	P	4.4397726	P	0.832836613796165	0	lncRNA	10363-1_{1..804}	lnc-MKKS-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MKKS-3:3	chr20	 10199885	 10200688	-	lnc-MKKS-3	lnc-MKKS-3:3	ENSG00000227906	RP5-839B4.7	SNAP25	NA	chr20:10199477-10210154	inner
LNCA_21_P0010246	0.92614275	A	0.9099144	A	1.01131213882978	0	lncRNA	THC2675996	NA	NA	NA	NA	XLOC_013942	NA	NA	THC2675996	NA	"BROAD Institute lincRNA (XLOC_013942), lincRNA [TCONS_00029020]"	chr21:040701282-040701341	hs|21q22.2	Agilent_HUMAN_G3V2	THC2675996	THC2675996	chr21	 40701282	 40701341	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34685_PI429285431	0.91744006	A	0.9124942	A	1.00343409194345	0	lncRNA	36137-1_{1..578}	n341590|AF147437|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4061|NULL|-0.9009050|-0.3543022	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341590|AF147437|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4061|NULL|-0.9009050|-0.3543022	chr8	119047208	119047785	-	NA	NA	NA	NA	EXT1	NA	chr8:119037208-119057786	inner
CUST_50288_PI429285431	3.9678257	P	3.8866568	P	1.05787480447935	0	lncRNA	54007-7_{18001..18582}	hg19_lincRNAsTranscripts_TCONS_l2_00028843 range=chr9:76064311-76092053 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028843 range=chr9:76064311-76092053 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 76082311	 76082892	+	NA	NA	NA	NA	NA	"hg19_refFlat_DPP3:range=chr11:66249672-662767225'pad=0,hg19_refFlat_DPP3:range=chr11:66249672-662767225'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60"	NA	inter
CUST_8278_PI429285431	0.8993603	A	0.8930758	A	1.00436558497923	0	lncRNA	9862-1_{1..2190}	lnc-ALX4-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ALX4-5:4	chr11	 43855160	 43857349	-	lnc-ALX4-5	lnc-ALX4-5:4	ENSG00000246250	ENSG00000246250.2	HSD17B12	NA	chr11:43845160-43865467	inner
CUST_25072_PI429285431	7.432618	P	7.486489	P	0.963348028883319	0	lncRNA	26609-1_{1..376}	lnc-CTTNBP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTTNBP2-1:1	chr7	117287405	117287780	-	lnc-CTTNBP2-1	lnc-CTTNBP2-1:1	ENSG00000083622.8	AC000111.6	CFTR	NA	chr7:117277405-117297469	inner
CUST_43337_PI429285431	1.9996125	A	0.9930198	A	2.009160336942	0	lncRNA	48164-1_{1..1637}	ENST00000591150 havana:sense_intronic chromosome:GRCh37:19:19418030:19419666:-1 gene:ENSG00000267266 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000591150 havana:sense_intronic chromosome:GRCh37:19:19418030:19419666:-1 gene:ENSG00000267266 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 19418030	 19419666	-	ENSG00000267266	ENST00000591150	NA	NA	SUGP1	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90chr19:19408030-19429666"	NA	inner
CUST_45528_PI429285431	0.89239514	A	0.88877416	A	1.00251302444358	0	lncRNA	49936-1_{1..2859}	"gi|393281728|ref|NR_072993.1| Homo sapiens enkurin, TRPC channel interacting protein (ENKUR), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393281728|ref|NR_072993.1| Homo sapiens enkurin, TRPC channel interacting protein (ENKUR), transcript variant 4, non-coding RNA"	Chr10	 25270908	 25273766	-	219670	NR_072993.1	NA	NA	NA	NA	NA	inter
CUST_45145_PI429285431	4.09303	P	3.722342	P	1.29296928162995	0	lncRNA	49625-1_{1..3000}	"gi|338968835|ref|NR_040091.1| Homo sapiens uncharacterized LOC100506990 (LOC100506990), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338968835|ref|NR_040091.1| Homo sapiens uncharacterized LOC100506990 (LOC100506990), transcript variant 1, non-coding RNA"	Chr8	 12294522	 12297521	+	100506990	NR_040091.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_34029_PI429285431	6.35425	P	4.7426295	P	3.05594907036098	0	lncRNA	35562-1_{1..1847}	n340847|AJ420516|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3311|NULL|-1.1864900|-0.5005306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340847|AJ420516|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3311|NULL|-1.1864900|-0.5005306	chr6	 11137152	 11138998	+	NA	NA	NA	NA	LOC221710	NA	chr6:11127152-11138971	inner
CUST_21534_PI429285431	4.5827174	P	5.033137	P	0.731829968253971	0	lncRNA	23152-1_{1..704}	lnc-IKBKE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IKBKE-1:1	chr1	206577004	206577707	+	lnc-IKBKE-1	lnc-IKBKE-1:1	ENSG00000224900.1	SRGAP2-IT1	SRGAP2	NA	chr1:206567004-206587294	inner
CUST_51846_PI429285431	1.0708737	A	0.9119373	A	1.11646374253066	0	lncRNA	55401-1_{1..359}	hg19_lincRNAsTranscripts_TCONS_l2_00013125 range=chr19:43787824-43788569 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013125 range=chr19:43787824-43788569 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 43787824	 43788182	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3063_PI429285431	1.0454738	A	1.0437242	A	1.00121346596186	0	lncRNA	3042-1_{1..537}	"transcript_id ""ENST00000518217.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518217.1"" | genecode_v17"	chr8	 34032404	 34032940	+	ENSG00000254302.1	ENST00000518217.1	RP11-431M3.1	RP11-431M3.1-001	NA	NA	NA	inter
CUST_1788_PI429285431	0.9697517	A	0.9104004	A	1.04199712713326	0	lncRNA	1774-1_{1..760}	"transcript_id ""ENST00000511603.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511603.1"" | genecode_v17"	chr4	 60633534	 60634293	-	ENSG00000249892.1	ENST00000511603.1	RP11-525J21.1	RP11-525J21.1-001	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-17.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10"	NA	inter
CUST_29763_PI429285431	1.3579284	A	0.9057692	A	1.36808626256686	0	lncRNA	31525-1_{1..817}	n333452|BC020617|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090184|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090184|-1.3169800|-0.4466706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333452|BC020617|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090184|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090184|-1.3169800|-0.4466706	chr4	187187126	187187942	+	NA	NA	NA	NA	KLKB1	NA	chr4:187177126-187179625	inner
CUST_25365_PI429285431	4.910472	P	5.063625	P	0.899282936769371	0	lncRNA	26895-1_{1..1459}	lnc-CTTNBP2NL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTTNBP2NL-1:1	chr1	113005177	113006635	+	lnc-CTTNBP2NL-1	lnc-CTTNBP2NL-1:1	ENSG00000248201.1	RP4-671G15.3	CTTNBP2NL	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50chr1:112995177-113003786"	NA	inter
CUST_9304_PI429285431	0.949295	A	0.93074805	A	1.01293875671616	0	lncRNA	10811-1_{1..486}	lnc-GPR65-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR65-2:1	chr14	 88557680	 88558165	+	lnc-GPR65-2	lnc-GPR65-2:1	XLOC_010898	linc-SPATA7-2	NA	NA	NA	inter
CUST_7258_PI429285431	0.9122677	A	1.3634859	A	0.731424977823914	0	lncRNA	8030-1_{1..284}	"transcript_id ""ENST00000515888.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515888.1"" | genecode_v17"	chr9	 34478620	 34478903	+	ENSG00000251697.1	ENST00000515888.1	RN7SKP24	RN7SKP24-201	DNAI1	NA	chr9:34468620-34488903	inner
CUST_14771_PI429285431	0.92782915	A	0.90946037	A	1.01281366849623	0	lncRNA	16432-1_{1..232}	lnc-TECRL-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TECRL-3:1	chr4	 63320310	 63320541	-	lnc-TECRL-3	lnc-TECRL-3:1	XLOC_003967	linc-IGFBP7-4	NA	NA	NA	inter
CUST_14793_PI429285431	7.504837	P	7.596098	P	0.938701910063174	0	lncRNA	16454-1_{1..705}	lnc-MYC-2:32	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYC-2:32	chr8	129113226	129113930	+	lnc-MYC-2	lnc-MYC-2:32	XLOC_006925	linc-EFR3A-4	NA	NA	NA	inter
CUST_14084_PI429285431	0.91205895	A	0.9150741	A	0.997912239688189	0	lncRNA	15729-1_{1..316}	lnc-COBL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COBL-1:1	chr7	 51470225	 51470540	-	lnc-COBL-1	lnc-COBL-1:1	XLOC_006442	linc-COBL-7	LOC100131871	NA	chr7:51460225-51460910	inter
CUST_19641_PI429285431	1.229656	A	0.9090484	A	1.24885640181086	0	lncRNA	21297-1_{1..1300}	lnc-GJA10-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GJA10-3:7	chr6	 90583525	 90584824	+	lnc-GJA10-3	lnc-GJA10-3:7	ENSG00000118412.8	CASP8AP2	CASP8AP2	NA	chr6:90573525-90584155	inner
CUST_9930_PI429285431	0.9206751	A	0.91640556	A	1.00296380301856	0	lncRNA	11455-1_{1..3000}	lnc-C9orf91-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf91-1:1	chr9	117421271	117424270	+	lnc-C9orf91-1	lnc-C9orf91-1:1	XLOC_007528	linc-DEC1	LOC100505478	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30chr9:117428714-117435007"	NA	inter
CUST_50225_PI429285431	6.303605	P	6.4487305	P	0.904300709046852	0	lncRNA	53949-1_{1..1726}	hg19_lincRNAsTranscripts_TCONS_l2_00029327 range=chr9:67271999-67290239 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029327 range=chr9:67271999-67290239 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 67271999	 67273724	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15751_PI429285431	0.9098135	A	0.8946115	A	1.01059293548926	0	lncRNA	17439-1_{1..318}	lnc-SLC20A1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC20A1-2:1	chr2	113438585	113438902	+	lnc-SLC20A1-2	lnc-SLC20A1-2:1	XLOC_001628	linc-IL1F7	NA	NA	NA	inter
CUST_36580_PI429285431	1.116237	A	0.920172	A	1.14556950995501	0	lncRNA	37773-1_{1..670}	n345075|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_624|NULL|-1.4393000|-0.4148553	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345075|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_624|NULL|-1.4393000|-0.4148553	chrX	  7923513	  7924182	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22471_PI429285431	3.1235404	A	3.3127284	A	0.877099245018104	0	lncRNA	24058-1_{1..449}	lnc-FAM101A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM101A-2:2	chr12	124720091	124720539	+	lnc-FAM101A-2	lnc-FAM101A-2:2	ENSG00000255906.1	RP11-522N14.1	ZNF664-FAM101A	NA	chr12:124710091-124730148	inner
CUST_22755_PI429285431	0.8987152	A	0.9022282	A	0.997567936225723	0	lncRNA	24338-1_{1..510}	lnc-ZFP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZFP1-1:1	chr16	 75177986	 75178495	+	lnc-ZFP1-1	lnc-ZFP1-1:1	ENSG00000261058.1	RP11-252E2.2	ZFP1	NA	chr16:75182421-75188098	inter
CUST_12984_PI429285431	5.5889597	P	5.329918	P	1.19668355195635	0	lncRNA	14610-1_{1..3000}	lnc-HHLA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HHLA2-1:1	chr3	107855161	107858160	+	lnc-HHLA2-1	lnc-HHLA2-1:1	XLOC_002749	linc-HHLA2-2	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10"	NA	inter
CUST_35681_PI429285431	1.8490397	A	0.89138657	A	1.94214798049292	0	lncRNA	37101-1_{1..2080}	n342842|AK172857|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5345|NULL|-0.9486560|-0.4116202	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342842|AK172857|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5345|NULL|-0.9486560|-0.4116202	chr8	 64128538	 64130617	+	NA	NA	NA	NA	YTHDF3	NA	chr8:64118538-64125346	inter
CUST_3819_PI429285431	3.2376044	P	3.26363	A	0.982122167775354	0	lncRNA	3787-1_{1..574}	"transcript_id ""ENST00000448671.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448671.1"" | genecode_v17"	chr10	125208869	125209442	+	ENSG00000230131.1	ENST00000448671.1	RP11-282I1.1	RP11-282I1.1-002	NA	NA	NA	inter
CUST_41010_PI429285431	3.196483	P	3.3902438	P	0.874323571946075	0	lncRNA	41671-1_{1..1297}	n411612|NR_040081|lncRNA|Homosapiens||RefGeneNoncode|NR_040081||-1.1248300|-0.3381779	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411612|NR_040081|lncRNA|Homosapiens||RefGeneNoncode|NR_040081||-1.1248300|-0.3381779	chr6	 75994729	 75996025	+	NA	NA	NA	NA	TMEM30A	NA	chr6:75984729-75994632	inter
CUST_9049_PI429285431	0.9239846	A	1.3476789	A	0.745513147241787	0	lncRNA	10573-2_{3001..3768}	lnc-SYK-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SYK-3:1	chr9	 93575886	 93576653	+	lnc-SYK-3	lnc-SYK-3:1	ENSG00000249765	ENST00000515738	SYK	"hg19_refFlat_DIRAS2:range=chr9:93375510-933761095'pad=0,hg19_refFlat_DIRAS2:range=chr9:93375510-933761095'pad=0 3'pad=0 strand=- repeatMasking=none,-102.00chr9:93564012-93582918"	NA	inner
CUST_10930_PI429285431	0.91582614	A	0.9196619	A	0.997344785106116	0	lncRNA	12471-1_{1..273}	lnc-PAPPA-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAPPA-3:1	chr9	118660973	118661245	+	lnc-PAPPA-3	lnc-PAPPA-3:1	XLOC_007533	linc-PAPPA-2	NA	NA	NA	inter
CUST_27856_PI429285431	9.85247	P	9.675906	P	1.13018895864955	0	lncRNA	29449-1_{1..571}	n325092|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322463|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322463|-1.0644500|-0.1114127	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325092|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322463|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322463|-1.0644500|-0.1114127	chr2	242435204	242435774	+	NA	NA	NA	NA	FARP2	"hg19_refFlat_STK25:range=chr2:242435077-2424474505'pad=0,hg19_refFlat_STK25:range=chr2:242435077-2424474505'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80chr2:242425204-242434256"	NA	inner
CUST_32262_PI429285431	3.5704982	P	3.597455	P	0.981488453062675	0	lncRNA	33951-1_{1..2492}	n338837|AK124829|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1260|NULL|-0.6503880|-0.2166584	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338837|AK124829|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1260|NULL|-0.6503880|-0.2166584	chr12	  2027013	  2029504	+	NA	NA	NA	NA	CACNA2D4	"hg19_refFlat_CACNA2D4:range=chr12:1902821-20276395'pad=0,hg19_refFlat_CACNA2D4:range=chr12:1902821-20276395'pad=0 3'pad=0 strand=- repeatMasking=none,-100.70chr12:2017013-2027870"	NA	inner
CUST_38782_PI429285431	0.9197454	A	0.92019916	A	0.999685526992354	0	lncRNA	39775-2_{3001..3788}	n384430|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003gpk.1||-1.1615000|-0.3316093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384430|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003gpk.1||-1.1615000|-0.3316093	chr4	 17632878	 17633665	+	NA	NA	NA	NA	FAM184B	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40chr4:17633696-17643666"	NA	inter
CUST_40788_PI429285431	6.182436	P	6.3719797	P	0.8768830207049	0	lncRNA	41500-1_{1..3000}	n410542|NR_037709|lncRNA|Homosapiens||RefGeneNoncode|NR_037709||7.7407300|-0.1120809	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410542|NR_037709|lncRNA|Homosapiens||RefGeneNoncode|NR_037709||7.7407300|-0.1120809	chr17	 73975297	 73978296	+	NA	NA	NA	NA	ACOX1	NA	chr17:73965297-73975515	inter
CUST_14572_PI429285431	4.719241	P	4.7134523	P	1.00402048162274	0	lncRNA	16238-1_{1..257}	lnc-TMEM179-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM179-2:2	chr14	105121812	105122068	-	lnc-TMEM179-2	lnc-TMEM179-2:2	XLOC_011149	linc-TMEM179	NA	NA	NA	inter
CUST_5517_PI429285431	0.9226452	A	1.457336	A	0.690306608122606	0	lncRNA	5448-1_{1..726}	"transcript_id ""ENST00000565625.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565625.1"" | genecode_v17"	chr16	 34982728	 34983453	+	ENSG00000261122.1	ENST00000565625.1	RP11-352B15.1	RP11-352B15.1-002	NA	NA	NA	inter
CUST_42575_PI429285431	3.4060364	P	3.3585017	A	1.03349735749278	0	lncRNA	45412-1_{1..72}	ENST00000365659 ncrna:snoRNA chromosome:GRCh37:15:66794358:66794429:-1 gene:ENSG00000202529 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365659 ncrna:snoRNA chromosome:GRCh37:15:66794358:66794429:-1 gene:ENSG00000202529 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 66794358	 66794429	-	ENSG00000202529	ENST00000365659	NA	NA	ZWILCH	NA	chr15:66797431-66804429	inter
CUST_5597_PI429285431	3.6354756	P	3.9059243	P	0.829061654985919	0	lncRNA	5526-1_{1..475}	"transcript_id ""ENST00000567261.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567261.1"" | genecode_v17"	chr16	 67464570	 67465044	-	ENSG00000261320.1	ENST00000567261.1	RP11-297D21.2	RP11-297D21.2-001	ATP6V0D1	"hg19_refFlat_HSD11B2:range=chr16:67465152-674709065'pad=0,hg19_refFlat_HSD11B2:range=chr16:67465152-674709065'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.50chr16:67471917-67475367"	NA	inner
CUST_46576_PI429285431	10.649665	P	10.781647	P	0.912576874373999	0	lncRNA	50760-1_{1..2141}	"gi|225579153|ref|NR_027389.1| Homo sapiens insulin-like growth factor binding protein, acid labile subunit (IGFALS), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225579153|ref|NR_027389.1| Homo sapiens insulin-like growth factor binding protein, acid labile subunit (IGFALS), transcript variant 3, non-coding RNA"	Chr16	  1840414	  1842554	-	3483	NR_027389.1	NA	NA	NA	NA	NA	inter
CUST_32130_PI429285431	0.9232243	A	0.9142909	A	1.00621137208407	0	lncRNA	33830-1_{1..2220}	n338697|BC041923|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1117|NULL|-1.1290200|-0.3416153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n338697|BC041923|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1117|NULL|-1.1290200|-0.3416153	chr19	 44395955	 44398174	-	NA	NA	NA	NA	ZNF404	NA	chr19:44385955-44388116	inter
CUST_10775_PI429285431	1.5400176	A	1.7969433	A	0.836869341043862	0	lncRNA	12311-2_{3001..3295}	lnc-GPR63-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR63-4:1	chr6	 96374927	 96375221	-	lnc-GPR63-4	lnc-GPR63-4:1	XLOC_005787	linc-EPHA7-2	NA	NA	NA	inter
LNCA_21_P0009999	3.7321384	P	3.7939618	P	0.958052486050811	0	lncRNA	TCONS_00028299	NA	NA	NA	NA	XLOC_013639	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013639), lincRNA [TCONS_00028299]"	chr20:4552591-4552532	hs|20p13	Agilent_HUMAN_G3V2	TCONS_00028299	TCONS_00028299	chr20	  4552532	  4552591	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28900_PI429285431	0.9076759	A	0.9062878	A	1.00096262062345	0	lncRNA	30616-1_{1..657}	n326323|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000084671|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000084671|-1.3103400|-0.3833010	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326323|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000084671|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000084671|-1.3103400|-0.3833010	chr1	174140520	174141176	-	NA	NA	NA	NA	RABGAP1L	NA	chr1:174130520-174166272	inner
LNCA_21_P0014844	10.903531	P	10.456079	P	1.36362976901422	0	lncRNA	ENST00000430166	XR_132714	XR_132714	NA	Hs.707663	LOC100652874	NA	ENST00000430166	THC2508944	NA	"PREDICTED: Homo sapiens hypothetical LOC100652874 (LOC100652874), miscRNA [XR_132714]"	chr3:14963815-14962915	hs|3p25.1	Agilent_HUMAN_G3V2	ENST00000430166	ENST00000430166	chr3	 14962915	 14963815	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10213_PI429285431	0.9084697	A	0.9125153	A	0.99719973185202	0	lncRNA	11739-2_{3001..3742}	lnc-PLA2R1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLA2R1-1:2	chr2	160792611	160793352	-	lnc-PLA2R1-1	lnc-PLA2R1-1:2	XLOC_002368	linc-LY75	PLA2R1	NA	chr2:160797260-160802473	inter
CUST_32438_PI429285431	3.1034384	A	3.485197	P	0.767501459998428	0	lncRNA	34112-1_{1..3000}	n339037|CR749491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1466|NULL|-0.1938820|-0.3414275	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339037|CR749491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1466|NULL|-0.1938820|-0.3414275	chr2	179419287	179422286	+	NA	NA	NA	NA	TTN	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30chr2:179409287-179433693"	NA	inter
CUST_9441_PI429285431	1.3400369	A	0.93172085	A	1.32713584329691	0	lncRNA	10947-1_{1..377}	lnc-FAM153B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM153B-3:1	chr5	175414056	175414432	+	lnc-FAM153B-3	lnc-FAM153B-3:1	XLOC_004653	linc-FAM153B	NA	NA	NA	inter
CUST_49586_PI429285431	0.9263146	A	0.9920807	A	0.955437826214566	0	lncRNA	53375-1_{1..1513}	hg19_lincRNAsTranscripts_TCONS_l2_00024953 range=chr6:143287506-143358191 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024953 range=chr6:143287506-143358191 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	143287506	143289018	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40502_PI429285431	0.898289	A	0.89948845	A	0.999168950127662	0	lncRNA	41267-1_{1..1609}	n409437|NR_033823_6|lncRNA|Homosapiens||RefGeneNoncode|NR_033823_6||-1.0286600|-0.3832296	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409437|NR_033823_6|lncRNA|Homosapiens||RefGeneNoncode|NR_033823_6||-1.0286600|-0.3832296	chr6	  2106665	  2108273	+	NA	NA	NA	NA	GMDS	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10chr6:2096665-2136649"	NA	inner
LNCA_21_P0008451	2.475536	A	2.0130582	A	1.37790631372291	0	lncRNA	THC2686750	NA	NA	NA	NA	XLOC_011059	NA	NA	THC2686750	NA	"BROAD Institute lincRNA (XLOC_011059), lincRNA [TCONS_00022775]"	chr14:069283989-069283930	hs|14q24.1	Agilent_HUMAN_G3V2	THC2686750	THC2686750	chr14	 69283930	 69283989	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14786_PI429285431	1.4237084	A	1.2229787	A	1.14927950151748	0	lncRNA	16447-1_{1..512}	lnc-ENPP1-4:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENPP1-4:15	chr6	132490141	132490652	+	lnc-ENPP1-4	lnc-ENPP1-4:15	XLOC_005465	linc-TAAR9-1	NA	NA	NA	inter
CUST_35978_PI429285431	6.0433025	P	5.837819	P	1.15307271899336	0	lncRNA	37324-1_{1..3000}	n344599|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_147|NULL|-1.5340900|-0.2563807	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344599|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_147|NULL|-1.5340900|-0.2563807	chr2	 65040867	 65043866	-	NA	NA	NA	NA	SLC1A4	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr2:65187142-65193459"	NA	inter
CUST_29127_PI429285431	6.346638	P	6.8343043	P	0.713177799923	0	lncRNA	30865-1_{1..1129}	n326630|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021455|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021455|-1.0448800|-0.3008231	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326630|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021455|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021455|-1.0448800|-0.3008231	chr1	 46684931	 46686059	-	NA	NA	NA	NA	POMGNT1	"hg19_refFlat_LURAP1:range=chr1:46669099-466858925'pad=0,hg19_refFlat_LURAP1:range=chr1:46669099-466858925'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00chr1:46674931-46685977"	NA	inner
CUST_902_PI429285431	7.4143705	P	7.497192	P	0.944209235884016	0	lncRNA	891-1_{1..1977}	"transcript_id ""ENST00000445865.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445865.1"" | genecode_v17"	chr2	 65073264	 65075240	-	ENSG00000234572.1	ENST00000445865.1	AC007880.1	AC007880.1-001	NA	NA	NA	inter
LNCA_21_P0010312	1.0096264	A	0.9441048	A	1.04646321554555	0	lncRNA	TCONS_00029216	NA	NA	NA	NA	XLOC_013942	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013942), lincRNA [TCONS_00029216]"	chr21:40695106-40695165	hs|21q22.2	Agilent_HUMAN_G3V2	TCONS_00029216	TCONS_00029216	chr21	 40695106	 40695165	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003818	1.0126734	A	0.94740355	A	1.04628062385247	0	lncRNA	TCONS_00008698	NA	NA	NA	NA	XLOC_004212	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004212), lincRNA [TCONS_00008698]"	chr4:186938434-186938375	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00008698	TCONS_00008698	chr4	186938375	186938434	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18705_PI429285431	4.3879414	P	5.0023036	P	0.653218610660274	0	lncRNA	20403-1_{1..1152}	lnc-PCM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PCM1-1:1	chr8	 17773611	 17774762	+	lnc-PCM1-1	lnc-PCM1-1:1	ENSG00000254054	RP11-156K13.3	PCM1	NA	chr8:17780366-17783919	inter
CUST_2218_PI429285431	0.90581524	A	0.8959286	A	1.00687643146726	0	lncRNA	2210-1_{1..825}	"transcript_id ""ENST00000514840.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514840.1"" | genecode_v17"	chr5	 82308104	 82308928	-	ENSG00000249664.1	ENST00000514840.1	CTD-2227C6.2	CTD-2227C6.2-001	NA	NA	NA	inter
CUST_23982_PI429285431	1.6122541	A	2.0705228	A	0.727859199083227	0	lncRNA	25537-1_{1..651}	lnc-STC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STC1-2:1	chr8	 24769525	 24770175	-	lnc-STC1-2	lnc-STC1-2:1	ENSG00000253535.1	RP11-624C23.1	NEFM	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70chr8:24771274-24776606"	NA	inter
CUST_46379_PI429285431	6.23547	P	5.5906506	P	1.56354354590225	0	lncRNA	50596-1_{1..2840}	"gi|223278401|ref|NR_026779.1| Homo sapiens long intergenic non-protein coding RNA 341 (LINC00341), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223278401|ref|NR_026779.1| Homo sapiens long intergenic non-protein coding RNA 341 (LINC00341), non-coding RNA"	Chr14	 95873603	 95876442	-	79686	NR_026779.1	NA	NA	NA	NA	NA	inter
CUST_1468_PI429285431	1.6352309	A	0.9324758	A	1.62761005704264	0	lncRNA	1457-1_{1..3000}	"transcript_id ""ENST00000418282.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000418282.1"" | genecode_v17"	chr3	138823027	138826026	+	ENSG00000232416.2	ENST00000418282.1	BPESC1	BPESC1-001	NA	NA	NA	inter
CUST_6419_PI429285431	2.9109914	A	3.8254008	P	0.530561023444728	0	lncRNA	6358-1_{1..583}	"transcript_id ""ENST00000592311.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592311.1"" | genecode_v17"	chr19	 28807612	 28808194	-	ENSG00000267320.1	ENST00000592311.1	AC005780.1	AC005780.1-003	NA	NA	NA	inter
CUST_14430_PI429285431	1.0876597	A	1.5290258	A	0.736436940085926	0	lncRNA	16091-1_{1..807}	lnc-AUH-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AUH-2:2	chr9	 93869405	 93870211	-	lnc-AUH-2	lnc-AUH-2:2	XLOC_007775	linc-DIRAS2-4	NA	NA	NA	inter
CUST_33462_PI429285431	0.955254	A	0.9287281	A	1.01855642250294	0	lncRNA	35035-1_{1..1748}	n340196|CR605402|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2657|NULL|-0.3501230|-0.3934266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340196|CR605402|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2657|NULL|-0.3501230|-0.3934266	chr4	106962788	106964535	-	NA	NA	NA	NA	TBCK	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70chr4:106967233-106974536"	NA	inter
CUST_50445_PI429285431	0.91381925	A	0.9009001	A	1.00899508721746	0	lncRNA	54148-1_{1..2139}	hg19_lincRNAsTranscripts_TCONS_l2_00030217 range=chrX:55363319-55381743 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030217 range=chrX:55363319-55381743 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 55363319	 55365457	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_522_PI429285431	0.92277575	A	0.91115427	A	1.0080879280931	0	lncRNA	514-1_{1..299}	"transcript_id ""ENST00000434983.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434983.1"" | genecode_v17"	chr1	191190289	191190587	+	ENSG00000233882.1	ENST00000434983.1	RP11-309H21.2	RP11-309H21.2-001	NA	NA	NA	inter
CUST_25162_PI429285431	1.4436376	A	1.6127299	A	0.889402090008981	0	lncRNA	26699-1_{1..569}	lnc-NPTX1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPTX1-2:3	chr17	 78388729	 78389297	-	lnc-NPTX1-2	lnc-NPTX1-2:3	ENSG00000263069.1	CTD-2047H16.4	ENDOV	"hg19_refFlat_RNF213:range=chr17:78237481-783672985'pad=0,hg19_refFlat_RNF213:range=chr17:78237481-783672985'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30chr17:78388967-78398918"	NA	inter
CUST_32135_PI429285431	4.7567935	P	5.382013	P	0.648321130480313	0	lncRNA	33835-1_{1..1132}	n338702|BC047034|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1122|NULL|-1.0207400|-0.1879401	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338702|BC047034|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1122|NULL|-1.0207400|-0.1879401	chr2	 25048478	 25049609	+	NA	NA	NA	NA	CENPO	"hg19_refFlat_ADCY3:range=chr2:25042801-251418565'pad=0,hg19_refFlat_ADCY3:range=chr2:25042801-251418565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10chr2:25038478-25045245"	NA	inner
CUST_29186_PI429285431	1.2197926	A	0.959401	A	1.19780378808834	0	lncRNA	30931-1_{1..282}	n326699|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000005700|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000005700|-1.3933200|-0.5734541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326699|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000005700|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000005700|-1.3933200|-0.5734541	chr1	 14420972	 14421253	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17780_PI429285431	1.095403	A	1.6566571	A	0.677712788216211	0	lncRNA	19512-1_{1..917}	lnc-GTPBP8-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GTPBP8-1:7	chr3	112883901	112884817	+	lnc-GTPBP8-1	lnc-GTPBP8-1:7	XLOC_002760	linc-BOC	NA	NA	NA	inter
CUST_24496_PI429285431	0.8982783	A	0.90851146	A	0.992932010559884	0	lncRNA	26048-1_{1..583}	lnc-OSGIN1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OSGIN1-1:3	chr16	 83984733	 83985315	+	lnc-OSGIN1-1	lnc-OSGIN1-1:3	ENSG00000260300.1	RP11-505K9.4	OSGIN1	NA	chr16:83982672-83994760	inter
CUST_29114_PI429285431	7.881507	P	8.3610325	P	0.717213475539704	0	lncRNA	30848-1_{1..2366}	n326613|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000022441|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000022441|-0.8529050|-0.1639414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326613|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000022441|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000022441|-0.8529050|-0.1639414	chr1	 51433354	 51435719	-	NA	NA	NA	NA	FAF1	NA	chr1:51423354-51425936	inner
CUST_36806_PI429285431	1.1274253	A	1.637406	A	0.702231832081442	0	lncRNA	37978-1_{1..1184}	n345285|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_834|NULL|-1.2996200|-0.1788999	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345285|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_834|NULL|-1.2996200|-0.1788999	chr14	103221176	103222359	+	NA	NA	NA	NA	NA	"hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60"	NA	inter
CUST_1601_PI429285431	0.91694134	A	0.924056	A	0.995080633394414	0	lncRNA	1587-1_{1..153}	"transcript_id ""ENST00000413056.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413056.1"" | genecode_v17"	chr3	187650552	187650704	-	ENSG00000236864.1	ENST00000413056.1	RP11-44H4.1	RP11-44H4.1-001	NA	NA	NA	inter
CUST_37830_PI429285431	0.91754776	A	1.5214173	A	0.657986760238703	0	lncRNA	38922-1_{1..465}	n346352|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1902|NULL|-1.4468400|-0.1701095	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346352|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1902|NULL|-1.4468400|-0.1701095	chr2	114082764	114083228	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30089_PI429285431	3.0679994	A	4.2207575	P	0.449764562811933	0	lncRNA	31861-1_{1..366}	n334625|U84581|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221895|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221895|2.1438800|-0.1302595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334625|U84581|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221895|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221895|2.1438800|-0.1302595	chr9	 71866096	 71866461	+	NA	NA	NA	NA	TJP2	NA	chr9:71856096-71870124	inner
CUST_24960_PI429285431	3.3302355	P	4.0320387	P	0.614803294064034	0	lncRNA	26498-1_{1..917}	lnc-C3orf37-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C3orf37-1:1	chr3	129036775	129037691	+	lnc-C3orf37-1	lnc-C3orf37-1:1	ENSG00000206417.4	H1FX-AS1	H1FX	"hg19_refFlat_H1FX:range=chr3:129034104-1290347455'pad=0,hg19_refFlat_H1FX:range=chr3:129034104-1290347455'pad=0 3'pad=0 strand=- repeatMasking=none,-113.90chr3:129033614-129035120"	NA	inter
CUST_34990_PI429285431	1.0546627	A	1.0598722	A	0.996395561403586	0	lncRNA	36404-1_{1..3000}	n341916|AL833333|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4397|NULL|11.8217000|-0.1479888	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341916|AL833333|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4397|NULL|11.8217000|-0.1479888	chr12	 50747426	 50750425	-	NA	NA	NA	NA	LARP4	NA	chr12:50759382-50800405	inner
CUST_9761_PI429285431	0.9274125	A	0.9365903	A	0.99365862572837	0	lncRNA	11278-2_{3001..4337}	lnc-KCNV1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNV1-2:6	chr8	112019890	112021226	-	lnc-KCNV1-2	lnc-KCNV1-2:6	XLOC_007182	linc-KCNV1-1	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70"	NA	inter
CUST_30715_PI429285431	0.92656094	A	0.9193887	A	1.00498379593601	0	lncRNA	32497-1_{1..544}	n336258|Y07824|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325363|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325363|-1.2803700|-0.2881923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336258|Y07824|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325363|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325363|-1.2803700|-0.2881923	chr6	  2617459	  2618002	+	NA	NA	NA	NA	C6orf195	NA	chr6:2622972-2628250	inter
CUST_20527_PI429285431	0.91161036	A	1.701643	A	0.578331007456554	0	lncRNA	22169-1_{1..1157}	lnc-N4BP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-N4BP2-1:1	chr4	 40168295	 40169451	+	lnc-N4BP2-1	lnc-N4BP2-1:1	ENSG00000260296.1	RP11-395I6.3	N4BP2	NA	chr4:40158295-40159872	inter
CUST_27256_PI429285431	0.9269418	A	0.91583484	A	1.00772846964465	0	lncRNA	28808-1_{1..843}	n324401|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042072|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042072|1.6829000|-0.1283785	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324401|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042072|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042072|1.6829000|-0.1283785	chr6	126037197	126038039	+	NA	NA	NA	NA	HEY2	NA	chr6:126070732-126082415	inner
CUST_13320_PI429285431	0.9235884	A	0.91814053	A	1.00378331446501	0	lncRNA	14955-1_{1..459}	lnc-HS1BP3-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HS1BP3-1:11	chr2	 20727553	 20728011	-	lnc-HS1BP3-1	lnc-HS1BP3-1:11	XLOC_002010	linc-PUM2-2	HS1BP3	NA	chr2:20729156-20737696	inter
CUST_45818_PI429285431	2.4461856	A	2.9748101	P	0.693215347195574	0	lncRNA	50152-2_{3001..3177}	"gi|363543325|ref|NR_045638.1| Homo sapiens CD6 molecule (CD6), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|363543325|ref|NR_045638.1| Homo sapiens CD6 molecule (CD6), transcript variant 4, non-coding RNA"	Chr11	 60742113	 60742289	+	923	NR_045638.1	NA	NA	NA	NA	NA	inter
CUST_23131_PI429285431	6.7534795	P	7.025695	P	0.828046964057057	0	lncRNA	24702-1_{1..487}	lnc-TARDBP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TARDBP-2:1	chr1	 11161858	 11162344	+	lnc-TARDBP-2	lnc-TARDBP-2:1	ENSG00000230337.1	RP4-635E18.6	MTOR	"hg19_refFlat_EXOSC10:range=chr1:11126775-111598885'pad=0,hg19_refFlat_EXOSC10:range=chr1:11126775-111598885'pad=0 3'pad=0 strand=- repeatMasking=none,-101.90chr1:11166588-11172108"	NA	inter
CUST_47129_PI429285431	4.632839	P	4.6875215	P	0.962806308644671	0	lncRNA	51210-1_{1..3000}	"gi|28476829|ref|NR_001278.1| Homo sapiens cytochrome P450, family 2, subfamily B, polypeptide 7 pseudogene 1 (CYP2B7P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|28476829|ref|NR_001278.1| Homo sapiens cytochrome P450, family 2, subfamily B, polypeptide 7 pseudogene 1 (CYP2B7P1), non-coding RNA"	Chr19	 41430170	 41433169	+	1556	NR_001278.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_22424_PI429285431	0.9078601	A	0.9025763	A	1.00366916604182	0	lncRNA	24013-1_{1..388}	lnc-SLC38A8-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC38A8-1:2	chr16	 83964636	 83965023	-	lnc-SLC38A8-1	lnc-SLC38A8-1:2	ENSG00000260932.1	RP11-483P21.6	NA	NA	NA	inter
CUST_39470_PI429285431	5.109438	P	4.306767	P	1.74432758026159	0	lncRNA	40413-1_{1..1342}	n387037|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wpy.1||-1.1036000|-0.2547891	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387037|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wpy.1||-1.1036000|-0.2547891	chr17	 62399863	 62401204	-	NA	NA	NA	NA	PECAM1	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20chr17:62396775-62404856"	NA	inner
CUST_243_PI429285431	2.9650207	A	2.9806092	A	0.989253040852775	0	lncRNA	235-1_{1..994}	"transcript_id ""ENST00000544621.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000544621.1"" | genecode_v17"	chr1	 59250823	 59251816	+	ENSG00000234807.4	ENST00000544621.1	RP4-794H19.2	RP4-794H19.2-201	JUN	NA	chr1:59246463-59249785	inter
CUST_29898_PI429285431	1.1348823	A	1.2178266	A	0.944128869655309	0	lncRNA	31661-1_{1..408}	n333982|M15221|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194384|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194384|2.0628500|-0.0687963	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333982|M15221|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194384|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194384|2.0628500|-0.0687963	NA	NA	      407	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11239_PI429285431	4.115506	P	4.4441223	P	0.796299854983986	0	lncRNA	12797-1_{1..847}	lnc-EIF2B5-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-EIF2B5-2:8	chr3	184456423	184457269	+	lnc-EIF2B5-2	lnc-EIF2B5-2:8	XLOC_002952	linc-VPS8-2	NA	NA	NA	inter
CUST_31933_PI429285431	2.9623852	A	1.4287351	A	2.89517408666625	0	lncRNA	33661-1_{1..2357}	n338489|AK024944|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|886|NULL|-1.1228700|-0.3992641	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338489|AK024944|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|886|NULL|-1.1228700|-0.3992641	chr1	205578843	205581199	-	NA	NA	NA	NA	ELK4	NA	chr1:205577071-205591144	inner
CUST_51129_PI429285431	3.1574843	P	3.0249915	A	1.09618614097857	0	lncRNA	54760-1_{1..266}	hg19_lincRNAsTranscripts_TCONS_l2_00007037 range=chr13:114920207-114943193 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007037 range=chr13:114920207-114943193 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	114920207	114920472	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46975_PI429285431	0.9190764	A	0.9086193	A	1.00727464196006	0	lncRNA	51078-1_{1..574}	"gi|397139921|ref|XR_158926.1| PREDICTED: Homo sapiens uncharacterized LOC100996324 (LOC100996324), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">gi|397139921|ref|XR_158926.1| PREDICTED: Homo sapiens uncharacterized LOC100996324 (LOC100996324), misc_RNA"	Chr18	 12739485	 12740058	-	100996324	XR_158926.2	NA	NA	NA	NA	NA	inter
CUST_22084_PI429285431	1.566925	A	1.6090572	A	0.971218494772773	0	lncRNA	23689-1_{1..156}	lnc-TMEM219-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM219-1:1	chr16	 29952206	 29952361	+	lnc-TMEM219-1	lnc-TMEM219-1:1	ENSG00000260358.1	CTD-2574D22.1	NA	NA	NA	inter
CUST_41910_PI429285431	5.3383937	P	5.6111193	P	0.827754239620756	0	lncRNA	43643-1_{1..66}	ENST00000577203 ncrna:miRNA chromosome:GRCh37:11:113320745:113320810:-1 gene:ENSG00000265140 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577203 ncrna:miRNA chromosome:GRCh37:11:113320745:113320810:-1 gene:ENSG00000265140 gene_biotype:miRNA transcript_biotype:miRNA	chr11	113320745	113320810	-	ENSG00000265140	ENST00000577203	NA	NA	DRD2	NA	chr11:113310745-113330810	inner
LNCA_21_P0004937	0.933398	A	0.9165494	A	1.01174702021098	0	lncRNA	TCONS_00011946	NA	NA	NA	NA	XLOC_005458	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005458), lincRNA [TCONS_00011946]"	chr6:126399975-126400034	hs|6q22.32	Agilent_HUMAN_G3V2	TCONS_00011946	TCONS_00011946	chr6	126399975	126400034	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002172	0.9319778	A	0.9160652	A	1.01109082603826	0	lncRNA	TCONS_00003580	NA	NA	NA	NA	XLOC_001356	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001356), lincRNA [TCONS_00003580]"	chr2:13353592-13353651	hs|2p24.3	Agilent_HUMAN_G3V2	TCONS_00003580	TCONS_00003580	chr2	 13353592	 13353651	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44685_PI429285431	4.7481465	P	5.4523396	P	0.613785683258482	0	lncRNA	49245-1_{1..954}	"gi|223278364|ref|NR_026776.1| Homo sapiens uncharacterized LOC100270746 (LOC100270746), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223278364|ref|NR_026776.1| Homo sapiens uncharacterized LOC100270746 (LOC100270746), non-coding RNA"	Chr6	 26987145	 26988098	-	100270746	NR_026776.1	NA	NA	NA	NA	NA	inter
CUST_38727_PI429285431	5.9593754	P	6.0470734	P	0.94102307167944	0	lncRNA	39722-1_{1..611}	n384224|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003byc.1||-0.0796128|-0.1323613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384224|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003byc.1||-0.0796128|-0.1323613	chr3	 13652923	 13653533	-	NA	NA	NA	NA	FBLN2	NA	chr3:13642923-13663534	inner
CUST_33301_PI429285431	3.8727298	P	4.263207	P	0.762877225969155	0	lncRNA	34884-1_{1..1946}	n340017|BC033403|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2470|NULL|-1.0337300|-0.2405049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340017|BC033403|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2470|NULL|-1.0337300|-0.2405049	chr10	 44124264	 44126209	+	NA	NA	NA	NA	ZNF32	NA	chr10:44139307-44144326	inter
CUST_51443_PI429285431	2.2167206	A	2.1925697	A	1.01688102932582	0	lncRNA	55020-1_{1..1668}	hg19_lincRNAsTranscripts_TCONS_l2_00010088 range=chr16:30304719-30311727 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010088 range=chr16:30304719-30311727 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 30304719	 30306386	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4187_PI429285431	5.262538	P	5.634354	P	0.772809106726347	0	lncRNA	4146-1_{1..485}	"transcript_id ""ENST00000540994.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000540994.1"" | genecode_v17"	chr12	 23174721	 23175205	+	ENSG00000256995.2	ENST00000540994.1	RP11-114G22.1	RP11-114G22.1-005	NA	NA	NA	inter
CUST_26606_PI429285431	0.9382199	A	1.0555835	A	0.921870751100442	0	lncRNA	28109-1_{1..622}	lnc-ZIC5-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZIC5-4:1	chr13	100379483	100380104	-	lnc-ZIC5-4	lnc-ZIC5-4:1	ENSG00000234303.1	CLYBL-AS1	CLYBL	NA	chr13:100369483-100389745	inner
CUST_9525_PI429285431	1.8993244	A	1.4910862	A	1.32706423097765	0	lncRNA	11033-1_{1..783}	lnc-FOXG1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXG1-3:1	chr14	 27349576	 27350358	+	lnc-FOXG1-3	lnc-FOXG1-3:1	XLOC_010779	linc-FOXG1-2	NA	NA	NA	inter
CUST_31802_PI429285431	5.7233458	P	5.6427464	P	1.05745729364716	0	lncRNA	33539-2_{3001..3197}	n338343|AK055795|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|737|NULL|0.0869479|-0.2037193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338343|AK055795|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|737|NULL|0.0869479|-0.2037193	chr1	165883632	165883828	+	NA	NA	NA	NA	FAM78B	NA	chr1:166039256-166069452	inner
CUST_16916_PI429285431	0.9174167	A	0.9044267	A	1.00904463965597	0	lncRNA	18626-1_{1..221}	lnc-KCTD6-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCTD6-1:6	chr3	 58470299	 58470519	+	lnc-KCTD6-1	lnc-KCTD6-1:6	XLOC_002675	linc-KCTD6	KCTD6	NA	chr3:58477823-58480467	inter
CUST_7262_PI429285431	0.9310535	A	0.9272494	A	1.00264028060733	0	lncRNA	8046-1_{1..289}	"transcript_id ""ENST00000515967.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515967.1"" | genecode_v17"	chr9	 85815855	 85816143	-	ENSG00000251776.1	ENST00000515967.1	RN7SKP242	RN7SKP242-201	NA	NA	NA	inter
CUST_41193_PI429285431	0.92046607	A	1.0051254	A	0.943007186112754	0	lncRNA	42057-1_{1..77}	ENST00000577977 ncrna:miRNA chromosome:GRCh37:11:48118334:48118410:1 gene:ENSG00000263693 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577977 ncrna:miRNA chromosome:GRCh37:11:48118334:48118410:1 gene:ENSG00000263693 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 48118334	 48118410	+	ENSG00000263693	ENST00000577977	NA	NA	PTPRJ	NA	chr11:48108334-48128410	inner
CUST_35985_PI429285431	1.9910192	A	2.257979	A	0.83106901860753	0	lncRNA	37327-1_{1..1528}	n344602|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_150|NULL|-1.3538700|-0.4256448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344602|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_150|NULL|-1.3538700|-0.4256448	chr8	115299950	115301477	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7619_PI429285431	5.3701563	P	5.5326157	P	0.893500598035113	0	lncRNA	9252-1_{1..1267}	lnc-RPS24-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RPS24-3:1	chr10	 80310395	 80311661	+	lnc-RPS24-3	lnc-RPS24-3:1	ENSG00000230417	RP11-90J7.3	NA	NA	NA	inter
CUST_19097_PI429285431	0.90490556	A	1.2199371	A	0.803833417255758	0	lncRNA	20786-1_{1..1188}	lnc-OR51B4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OR51B4-1:1	NA	NA	     1187	NA	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-24.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10"	NA	Unknown
CUST_4773_PI429285431	0.8990813	A	1.7622387	A	0.549748093117265	0	lncRNA	4719-1_{1..1044}	"transcript_id ""ENST00000555636.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555636.1"" | genecode_v17"	chr14	 38760157	 38761200	+	ENSG00000259072.1	ENST00000555636.1	RP11-96D24.1	RP11-96D24.1-001	NA	NA	NA	inter
CUST_33564_PI429285431	0.89761245	A	0.8914912	A	1.00425194113854	0	lncRNA	35129-2_{3001..3464}	n340313|AK128141|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2774|NULL|-0.8278660|-0.1639401	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340313|AK128141|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2774|NULL|-0.8278660|-0.1639401	chr5	  6770320	  6770783	-	NA	NA	NA	NA	NA	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-23.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30"	NA	inter
CUST_6426_PI429285431	1.793018	A	1.1867573	A	1.52230844240423	0	lncRNA	6366-1_{1..437}	"transcript_id ""ENST00000585883.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585883.1"" | genecode_v17"	chr19	 29360703	 29361139	+	ENSG00000267617.1	ENST00000585883.1	AC007795.1	AC007795.1-001	NA	NA	NA	inter
CUST_26905_PI429285431	0.9040034	A	0.9030955	A	1.00062950638126	0	lncRNA	28423-1_{1..625}	n323981|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053809|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053809|-1.0351500|-0.2416456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323981|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053809|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053809|-1.0351500|-0.2416456	chr9	119642420	119643044	-	NA	NA	NA	NA	ASTN2	NA	chr9:119632420-119709355	inner
CUST_8319_PI429285431	1.3621356	A	0.8904482	A	1.38673046285817	0	lncRNA	9904-1_{1..2584}	lnc-FBXO7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXO7-1:1	chr22	 32905862	 32908445	+	lnc-FBXO7-1	lnc-FBXO7-1:1	ENSG00000249905	ENST00000512799	SYN3	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10chr22:32908539-32917788"	NA	inter
LNCA_21_P0001359	0.9219905	A	0.9058037	A	1.01128301319124	0	lncRNA	TCONS_00001085	NA	NA	NA	NA	XLOC_000329	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000329), lincRNA [TCONS_00001085]"	chr1:107028186-107028245	hs|1p21.1	Agilent_HUMAN_G3V2	TCONS_00001085	TCONS_00001085	chr1	107028186	107028245	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39974_PI429285431	11.887696	P	12.160461	P	0.827731633962053	0	lncRNA	40846-1_{1..1688}	n407053|NR_024547|lncRNA|Homosapiens||RefGeneNoncode|NR_024547||3.7212100|-0.1310013	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407053|NR_024547|lncRNA|Homosapiens||RefGeneNoncode|NR_024547||3.7212100|-0.1310013	chr17	 21101262	 21102949	-	NA	NA	NA	NA	TMEM11	NA	chr17:21101263-21117908	inner
CUST_23916_PI429285431	5.1123514	P	5.287888	P	0.885438125533028	0	lncRNA	25473-1_{1..897}	lnc-GPBP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPBP1-1:1	chr5	 56828763	 56829659	+	lnc-GPBP1-1	lnc-GPBP1-1:1	ENSG00000250961.1	CTD-2023N9.1	NA	NA	NA	inter
CUST_31057_PI429285431	5.1291785	P	5.815694	P	0.621352774641161	0	lncRNA	32847-1_{1..514}	n337281|BC128111|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389639|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389639|-0.8464250|-0.1928237	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337281|BC128111|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389639|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389639|-0.8464250|-0.1928237	chr7	150767877	150768390	-	NA	NA	NA	NA	SLC4A2	"hg19_refFlat_SLC4A2:range=chr7:150759727-1507734545'pad=0,hg19_refFlat_SLC4A2:range=chr7:150759727-1507734545'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_SLC4A2:range=chr7:150759075-1507734545'pad=0,hg19_refFlat_SLC4A2:range=chr7:150759075-1507734545'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_SLC4A2:range=chr7:150760268-1507734545'pad=0,hg19_refFlat_SLC4A2:range=chr7:150760268-1507734545'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70chr7:150757877-150773614"	NA	inner
CUST_6536_PI429285431	3.6362517	P	4.2051535	P	0.674129750332434	0	lncRNA	6479-1_{1..856}	"transcript_id ""ENST00000589594.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589594.1"" | genecode_v17"	chr19	 45653008	 45653863	-	ENSG00000267037.1	ENST00000589594.1	AC005757.7	AC005757.7-001	LRRC68	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60chr19:45643008-45650543"	NA	inner
CUST_17153_PI429285431	1.2965697	A	1.0491331	A	1.18709599185857	0	lncRNA	18862-1_{1..316}	lnc-LONP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LONP2-2:1	chr16	 48538281	 48538596	+	lnc-LONP2-2	lnc-LONP2-2:1	XLOC_011708	linc-C16orf78-6	NA	NA	NA	inter
CUST_25601_PI429285431	2.2610857	A	2.6102357	A	0.785046491515843	0	lncRNA	27130-1_{1..379}	lnc-CRNKL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CRNKL1-3:1	chr20	 19677260	 19677638	-	lnc-CRNKL1-3	lnc-CRNKL1-3:1	ENSG00000232675.1	RP4-718D20.3	SLC24A3	"hg19_refFlat_SLC24A3:range=chr20:19193487-197017845'pad=0,hg19_refFlat_SLC24A3:range=chr20:19193487-197017845'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90chr20:19667260-19687414"	NA	inner
CUST_23029_PI429285431	0.88862085	A	1.0901054	A	0.869655217366976	0	lncRNA	24600-1_{1..329}	lnc-OLR1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OLR1-2:1	chr12	 10367241	 10367569	-	lnc-OLR1-2	lnc-OLR1-2:1	ENSG00000255958.1	RP11-656E20.5	GABARAPL1	NA	chr12:10365489-10375727	inner
CUST_29320_PI429285431	1.8312365	A	1.8419658	A	0.992590601893702	0	lncRNA	31071-1_{1..401}	n332510|DQ914956|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468656|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468656|-1.2474700|-0.2227605	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332510|DQ914956|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468656|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468656|-1.2474700|-0.2227605	chr12	113357283	113357683	+	NA	NA	NA	NA	OAS3	NA	chr12:113376249-113379947	inner
CUST_51270_PI429285431	0.90615994	A	1.105616	A	0.87087884927362	0	lncRNA	54876-1_{1..814}	hg19_lincRNAsTranscripts_TCONS_l2_00008499 range=chr15:29053439-29064354 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008499 range=chr15:29053439-29064354 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 29053439	 29054252	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40288_PI429285431	3.922202	P	4.056103	P	0.911363817708231	0	lncRNA	41093-1_{1..2569}	n408237|NR_028400|lncRNA|Homosapiens||RefGeneNoncode|NR_028400||5.0939900|-0.1771698	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408237|NR_028400|lncRNA|Homosapiens||RefGeneNoncode|NR_028400||5.0939900|-0.1771698	chr1	231664398	231666966	+	NA	NA	NA	NA	DISC1	NA	chr1:231762561-231896365	inter
CUST_4204_PI429285431	0.9103184	A	0.8976954	A	1.00878798646566	0	lncRNA	4163-1_{1..373}	"transcript_id ""ENST00000545704.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000545704.1"" | genecode_v17"	chr12	 25984350	 25984722	-	ENSG00000256440.1	ENST00000545704.1	RP11-443N24.3	RP11-443N24.3-001	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00"	NA	inter
CUST_46229_PI429285431	6.7217655	P	6.557836	P	1.12033446561082	0	lncRNA	50468-2_{3001..3515}	"gi|388890255|ref|NR_002816.2| Homo sapiens mitochondrial ribosomal protein S31 pseudogene 3 (MRPS31P3), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|388890255|ref|NR_002816.2| Homo sapiens mitochondrial ribosomal protein S31 pseudogene 3 (MRPS31P3), transcript variant 1, non-coding RNA"	Chr13	 52744844	 52745358	-	100887750	NR_002816.2	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30"	NA	inter
CUST_36736_PI429285431	0.90728307	A	0.9035742	A	1.00257410010487	0	lncRNA	37912-1_{1..3000}	n345219|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_768|NULL|-1.3300000|-0.3283629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345219|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_768|NULL|-1.3300000|-0.3283629	chr13	 41025067	 41028066	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8672_PI429285431	0.8969469	A	0.8913798	A	1.00386627449938	0	lncRNA	10221-3_{6001..8459}	lnc-MAGI2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAGI2-1:1	chr7	 79099975	 79102433	-	lnc-MAGI2-1	lnc-MAGI2-1:1	ENSG00000249657	XLOC_006507	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.04;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_25764_PI429285431	0.9141833	A	0.9036068	A	1.00735800924545	0	lncRNA	27289-1_{1..462}	lnc-RIMKLB-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RIMKLB-2:2	chr12	  8821225	  8821686	+	lnc-RIMKLB-2	lnc-RIMKLB-2:2	ENSG00000255829.1	RP11-20D14.3	MFAP5	NA	chr12:8811225-8815433	inter
CUST_27951_PI429285431	1.0614349	A	1.4046402	A	0.788287990236965	0	lncRNA	29555-1_{1..415}	n325199|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329373|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329373|-1.2962900|-0.3110116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325199|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329373|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329373|-1.2962900|-0.3110116	chr2	105127031	105127445	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00"	NA	inter
CUST_5299_PI429285431	0.90674144	A	0.91492665	A	0.994342508985933	0	lncRNA	5239-1_{1..806}	"transcript_id ""ENST00000561108.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561108.1"" | genecode_v17"	chr15	 90048508	 90049313	-	ENSG00000259218.1	ENST00000561108.1	RP11-429B14.2	RP11-429B14.2-003	RHCG	NA	chr15:90038508-90039799	inter
LNCA_21_P0013604	1.7815608	A	3.4421554	P	0.316308756452571	0	lncRNA	TCONS_l2_00029085	NA	NA	NA	NA	XLOC_l2_015039	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015039), lincRNA [TCONS_l2_00029085]"	chr9:133072295-133072354	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_l2_00029085	TCONS_l2_00029085	chr9	133072295	133072354	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3245_PI429285431	1.113754	A	1.3091927	A	0.873307297050326	0	lncRNA	3224-1_{1..492}	"transcript_id ""ENST00000523870.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523870.1"" | genecode_v17"	chr8	101393702	101394193	-	ENSG00000253824.1	ENST00000523870.1	KB-173C10.2	KB-173C10.2-002	NA	NA	NA	inter
CUST_23587_PI429285431	0.9144188	A	1.1741508	A	0.835243062646174	0	lncRNA	25154-1_{1..510}	lnc-ANO3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANO3-1:1	chr11	 26229593	 26230102	+	lnc-ANO3-1	lnc-ANO3-1:1	ENSG00000255243.1	CTD-2507G9.1	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10"	NA	inter
CUST_8052_PI429285431	0.91389143	A	0.9099899	A	1.00270799453052	0	lncRNA	9660-1_{1..928}	lnc-NXPH2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NXPH2-3:1	chr2	139258889	139259816	-	lnc-NXPH2-3	lnc-NXPH2-3:1	ENSG00000228043	AC097721.2	SPOPL	NA	chr2:139259350-139269268	inter
CUST_18887_PI429285431	8.536839	P	7.031834	P	2.83825654903134	0	lncRNA	20580-2_{3001..4295}	lnc-SPATA21-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPATA21-2:4	chr1	 16934286	 16935580	-	lnc-SPATA21-2	lnc-SPATA21-2:4	ENSG00000219481	NBPF1	NBPF1	NA	chr1:16921286-16939982	inner
CUST_22429_PI429285431	4.612488	P	5.363287	P	0.594274342597664	0	lncRNA	24017-1_{1..511}	lnc-LRRC18-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC18-2:1	chr10	 50044637	 50045147	-	lnc-LRRC18-2	lnc-LRRC18-2:1	ENSG00000237241.1	RP11-563N6.4	WDFY4	NA	chr10:50034637-50054714	inner
CUST_21763_PI429285431	0.9121628	A	0.90712756	A	1.0034962601182	0	lncRNA	23373-1_{1..308}	lnc-CRLF3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CRLF3-1:1	chr17	 29109010	 29109317	-	lnc-CRLF3-1	lnc-CRLF3-1:1	ENSG00000265791.1	CTD-2349P21.10	CRLF3	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.81;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-60.40chr17:29109702-29119239"	NA	inter
CUST_31434_PI429285431	1.6490937	A	2.7290773	A	0.473034200602323	0	lncRNA	33205-1_{1..3000}	n337904|BX538221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|287|NULL|-0.8754770|-0.2419007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337904|BX538221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|287|NULL|-0.8754770|-0.2419007	chr15	 67152640	 67155639	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8367_PI429285431	4.1454277	P	4.047503	P	1.07023283725464	0	lncRNA	9946-1_{1..2469}	lnc-RPL36AL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPL36AL-1:1	chr14	 50087964	 50090432	-	lnc-RPL36AL-1	lnc-RPL36AL-1:1	ENSG00000248934	ENSG00000258377.1	LRR1	"hg19_refFlat_MGAT2:range=chr14:50087987-500893305'pad=0,hg19_refFlat_MGAT2:range=chr14:50087987-500893305'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.70chr14:50077964-50081390"	NA	inner
CUST_26776_PI429285431	0.9014936	A	0.90028596	A	1.00083742270389	0	lncRNA	28275-1_{1..1133}	n323828|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057680|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057680|-0.9275980|-0.2471032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323828|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057680|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057680|-0.9275980|-0.2471032	chrX	102025997	102027129	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22268_PI429285431	4.2487907	P	4.48358	P	0.849809101390407	0	lncRNA	23869-1_{1..478}	lnc-NT5DC3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NT5DC3-3:1	chr12	104051385	104051862	-	lnc-NT5DC3-3	lnc-NT5DC3-3:1	ENSG00000257737.1	RP11-341G23.2	STAB2	NA	chr12:104041385-104061773	inner
CUST_49569_PI429285431	3.4549718	P	3.5910854	P	0.909967169062044	0	lncRNA	53359-1_{1..524}	hg19_lincRNAsTranscripts_TCONS_l2_00024915 range=chr6:132930180-132935917 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024915 range=chr6:132930180-132935917 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	132930180	132930703	-	NA	NA	NA	NA	TAAR2	NA	chr6:132938289-132945414	inter
CUST_39733_PI429285431	0.9180821	A	0.91410726	A	1.00275894805062	0	lncRNA	40660-2_{3001..5068}	n405704|NR_002940_2|lncRNA|Homosapiens||RefGeneNoncode|NR_002940_2||0.9168350|-0.1984682	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405704|NR_002940_2|lncRNA|Homosapiens||RefGeneNoncode|NR_002940_2||0.9168350|-0.1984682	chr17	   200720	   202787	-	NA	NA	NA	NA	VPS53	"hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20chr17:411908-434115"	NA	inner
CUST_1975_PI429285431	0.9222088	A	0.9094093	A	1.00891140961915	0	lncRNA	1966-1_{1..553}	"transcript_id ""ENST00000508977.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508977.1"" | genecode_v17"	chr4	172523834	172524386	-	ENSG00000249297.1	ENST00000508977.1	RP11-97E7.2	RP11-97E7.2-001	NA	NA	NA	inter
CUST_44277_PI429285431	4.757293	P	5.07395	P	0.802928261804141	0	lncRNA	48914-1_{1..2556}	"gi|242332511|ref|NR_027954.1| Homo sapiens TIPARP antisense RNA 1 (TIPARP-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|242332511|ref|NR_027954.1| Homo sapiens TIPARP antisense RNA 1 (TIPARP-AS1), non-coding RNA"	Chr3	156390960	156393515	-	100287227	NR_027954.1	NA	NA	NA	NA	NA	inter
CUST_18278_PI429285431	3.2486658	P	1.8664584	A	2.60666900320547	0	lncRNA	20009-1_{1..2311}	lnc-ZNF131-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF131-1:5	chr5	 43044495	 43046805	+	lnc-ZNF131-1	lnc-ZNF131-1:5	ENSG00000215068	AC025171.1	C5orf39	NA	chr5:43039182-43040447	inter
CUST_26026_PI429285431	4.410646	P	4.2414436	P	1.12443666329431	0	lncRNA	27545-1_{1..400}	lnc-PLLP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLLP-1:1	chr16	 57286345	 57286744	-	lnc-PLLP-1	lnc-PLLP-1:1	ENSG00000260946.1	RP11-407G23.3	PLLP	"hg19_refFlat_ARL2BP:range=chr16:57279280-572861795'pad=0,hg19_refFlat_ARL2BP:range=chr16:57279280-572861795'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40chr16:57290009-57296664"	NA	inner
CUST_15136_PI429285431	0.90294456	A	0.89740574	A	1.00384659670248	0	lncRNA	16797-1_{1..342}	lnc-FOXG1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXG1-5:1	chr14	 27296923	 27297264	+	lnc-FOXG1-5	lnc-FOXG1-5:1	XLOC_010778	linc-FOXG1-3	NA	NA	NA	inter
CUST_44518_PI429285431	0.9279554	A	0.914513	A	1.00936110527263	0	lncRNA	49115-1_{1..3000}	"gi|374532768|ref|NR_046262.1| Homo sapiens uncharacterized LOC646719 (LOC646719), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374532768|ref|NR_046262.1| Homo sapiens uncharacterized LOC646719 (LOC646719), non-coding RNA"	Chr5	 36871463	 36874462	-	646719	NR_046262.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90"	NA	inter
LNCA_21_P0014361	0.93726695	A	0.92057955	A	1.01163397864383	0	lncRNA	XR_109455	XR_109455	XR_109455	NA	NA	LOC100506629	uncharacterized LOC100506629	NA	THC2529192	NA	"PREDICTED: Homo sapiens hypothetical LOC100506629 (LOC100506629), miscRNA [XR_109455]"	chr17:30837246-30837187	hs|17q11.2	Agilent_HUMAN_G3V2	XR_109455	XR_109455	chr17	 30837187	 30837246	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013235	1.076023	A	0.9218699	A	1.1127682022082	0	lncRNA	TCONS_l2_00025979	NA	NA	NA	NA	XLOC_l2_013462	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013462), lincRNA [TCONS_l2_00025979]"	chr7:65267426-65267485	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025979	TCONS_l2_00025979	chr7	 65267426	 65267485	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3276_PI429285431	1.0585189	A	0.8989928	A	1.11692018912846	0	lncRNA	3254-1_{1..556}	"transcript_id ""ENST00000523307.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523307.1"" | genecode_v17"	chr8	120227351	120227906	-	ENSG00000253972.1	ENST00000523307.1	RP11-4K16.2	RP11-4K16.2-003	MAL2	NA	chr8:120220610-120257913	inner
CUST_14267_PI429285431	2.0087345	A	1.8393339	A	1.12459115100635	0	lncRNA	15926-1_{1..220}	lnc-TRNP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRNP1-1:1	chr1	 27384889	 27385108	+	lnc-TRNP1-1	lnc-TRNP1-1:1	XLOC_000105	linc-WDTC1	NA	NA	NA	inter
CUST_43431_PI429285431	3.9242363	P	3.7434096	P	1.13353324185926	0	lncRNA	48239-2_{3001..4384}	"gi|303305010|ref|NR_036543.1| Homo sapiens peptidylprolyl isomerase E (cyclophilin E) (PPIE), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|303305010|ref|NR_036543.1| Homo sapiens peptidylprolyl isomerase E (cyclophilin E) (PPIE), transcript variant 3, non-coding RNA"	Chr1	 40207517	 40208900	+	10450	NR_036543.1	NA	NA	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.70"	NA	inter
LNCA_21_P0005511	11.568451	P	11.379297	P	1.14009496525438	0	lncRNA	ENST00000439105	NA	NA	NA	NA	XLOC_006513	NA	ENST00000439105	NA	NA	"BROAD Institute lincRNA (XLOC_006513), lincRNA [TCONS_00013877]"	chr7:84568859-84568800	hs|7q21.11	Agilent_HUMAN_G3V2	ENST00000439105	ENST00000439105	chr7	 84568800	 84568859	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2007_PI429285431	6.043343	P	6.2149477	P	0.887854577057413	0	lncRNA	1998-1_{1..188}	"transcript_id ""ENST00000507644.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507644.1"" | genecode_v17"	chr4	187812431	187812618	+	ENSG00000250829.1	ENST00000507644.1	RP11-11N5.1	RP11-11N5.1-001	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70"	NA	inter
CUST_8948_PI429285431	8.34606	P	8.614398	P	0.830275481251857	0	lncRNA	10482-1_{1..2586}	lnc-CERS5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CERS5-2:1	chr12	 50613600	 50616185	-	lnc-CERS5-2	lnc-CERS5-2:1	ENSG00000251589	ENST00000443172	LIMA1	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.56;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.60;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00chr12:50603600-50624726"	NA	inner
CUST_26711_PI429285431	3.0300112	A	2.4544756	A	1.49023060800063	0	lncRNA	28207-1_{1..2892}	n1836|AF400488|UBE3AantisenseRNA|Homosapiens|UBE3AantisenseRNA|NONCODEv2.0|n1836|NULL|-0.0426230|-0.2722525	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n1836|AF400488|UBE3AantisenseRNA|Homosapiens|UBE3AantisenseRNA|NONCODEv2.0|n1836|NULL|-0.0426230|-0.2722525	chr15	 25340607	 25343498	+	NA	NA	NA	NA	SNRPN	NA	chr15:25330607-25374501	inter
CUST_31776_PI429285431	0.9152515	A	0.91529274	A	0.999971415018832	0	lncRNA	33516-2_{3001..3987}	n338318|BX648929|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|712|NULL|-1.1313700|-0.3718485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338318|BX648929|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|712|NULL|-1.1313700|-0.3718485	chr14	 57825163	 57826149	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11655_PI429285431	2.17027	A	1.8678116	A	1.23324411255867	0	lncRNA	13232-1_{1..324}	lnc-ETNK2-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ETNK2-1:8	chr1	204009989	204010312	-	lnc-ETNK2-1	lnc-ETNK2-1:8	XLOC_001164	linc-FMOD-1	NA	NA	NA	inter
CUST_14691_PI429285431	3.929512	P	3.893157	P	1.02551955361946	0	lncRNA	16360-1_{1..3000}	lnc-NAP1L2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-NAP1L2-1:6	chrX	 73061217	 73064216	-	lnc-NAP1L2-1	lnc-NAP1L2-1:6	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90"	NA	inter
CUST_13281_PI429285431	1.1350076	A	0.92468774	A	1.15694466173948	0	lncRNA	14912-1_{1..587}	lnc-CDC42EP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDC42EP3-1:1	chr2	 38103254	 38103840	-	lnc-CDC42EP3-1	lnc-CDC42EP3-1:1	XLOC_002049	linc-CDC42EP3	NA	NA	NA	inter
CUST_3629_PI429285431	7.1240654	P	7.0891275	P	1.02451272250734	0	lncRNA	3599-1_{1..439}	"transcript_id ""ENST00000433460.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433460.1"" | genecode_v17"	chr10	 21629162	 21629600	-	ENSG00000230109.1	ENST00000433460.1	RP11-275N1.1	RP11-275N1.1-001	NA	NA	NA	inter
LNCA_21_P0007791	1.4916273	A	0.9315735	A	1.47432419575887	0	lncRNA	TCONS_00020983	NA	NA	NA	NA	XLOC_010248	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010248), lincRNA [TCONS_00020983]"	chr12:127629479-127629420	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020983	TCONS_00020983	chr12	127629420	127629479	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012641	4.4626746	P	4.321596	P	1.10272923963031	0	lncRNA	TCONS_l2_00020926	NA	NA	NA	NA	XLOC_l2_010969	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010969), lincRNA [TCONS_l2_00020926]"	chr4:184773748-184773807	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_l2_00020926	TCONS_l2_00020926	chr4	184773748	184773807	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29799_PI429285431	7.912438	P	6.711688	P	2.29859134602826	0	lncRNA	31562-1_{1..218}	n333508|BC035463|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000093919|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000093919|-1.2223000|-0.3618598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333508|BC035463|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000093919|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000093919|-1.2223000|-0.3618598	chr3	179305990	179306207	+	NA	NA	NA	NA	MRPL47	NA	chr3:179306253-179316208	inner
CUST_28546_PI429285431	3.5369837	P	4.311693	P	0.584506389216955	0	lncRNA	30218-1_{1..450}	n325895|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050223|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050223|-0.9787440|-0.2413523	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325895|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050223|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050223|-0.9787440|-0.2413523	chr10	107239343	107239792	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007489	1.0099566	A	0.9439025	A	1.04684953732411	0	lncRNA	XR_110328	XR_110328	XR_110328	NA	NA	LOC100507616	uncharacterized LOC100507616	NA	THC2602196	NA	"PREDICTED: Homo sapiens hypothetical LOC100507616 (LOC100507616), miscRNA [XR_110328]"	chr12:92876426-92876485	hs|12q22	Agilent_HUMAN_G3V2	XR_110328	XR_110328	chr12	 92876426	 92876485	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12457_PI429285431	1.928012	A	2.2746375	A	0.78642140776183	0	lncRNA	14069-1_{1..450}	lnc-ANGPTL2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANGPTL2-2:2	chr9	129375728	129376177	-	lnc-ANGPTL2-2	lnc-ANGPTL2-2:2	XLOC_007855	linc-MAPKAP1-3	LMX1B	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90chr9:129376722-129385979"	NA	inter
CUST_33489_PI429285431	0.919857	A	0.9121109	A	1.00538362729385	0	lncRNA	35061-1_{1..2029}	n340228|BC042886|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2689|NULL|-1.1806500|-0.3156206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n340228|BC042886|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2689|NULL|-1.1806500|-0.3156206	chr4	138948575	138950603	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23037_PI429285431	0.91642964	A	0.96241826	A	0.968625829731485	0	lncRNA	24608-1_{1..525}	lnc-PAWR-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAWR-3:1	chr12	 78934371	 78934895	-	lnc-PAWR-3	lnc-PAWR-3:1	ENSG00000257165.1	RP11-171L9.1	NA	NA	NA	inter
CUST_31683_PI429285431	5.732971	P	4.6600833	P	2.10363980381098	0	lncRNA	33430-1_{1..2101}	n338209|AK027019|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|601|NULL|-1.2337800|-0.3826811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338209|AK027019|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|601|NULL|-1.2337800|-0.3826811	chr1	120162037	120164137	-	NA	NA	NA	NA	ZNF697	NA	chr1:120152037-120174121	inner
CUST_12644_PI429285431	4.927013	P	5.16261	P	0.849333464691076	0	lncRNA	14261-2_{3001..4425}	lnc-NKX2-5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NKX2-5-1:1	chr5	172672696	172674120	-	lnc-NKX2-5-1	lnc-NKX2-5-1:1	XLOC_005085	linc-NKX2-5-1	NKX2-5	NA	chr5:172659696-172662315	inter
CUST_45538_PI429285431	6.089699	P	4.5387874	P	2.93002220892377	0	lncRNA	49942-2_{3001..3860}	"gi|409168317|ref|NR_073196.1| Homo sapiens acyl-CoA binding domain containing 5 (ACBD5), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|409168317|ref|NR_073196.1| Homo sapiens acyl-CoA binding domain containing 5 (ACBD5), transcript variant 6, non-coding RNA"	Chr10	 27487143	 27488002	-	91452	NR_073196.1	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50"	NA	inter
CUST_19558_PI429285431	0.924101	A	0.91537017	A	1.0060700990342	0	lncRNA	21214-1_{1..748}	lnc-SRPK2-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRPK2-4:7	chr7	104398056	104398803	-	lnc-SRPK2-4	lnc-SRPK2-4:7	ENSG00000226869.2	RP11-203P23.1	LHFPL3	NA	chr7:104388056-104408195	inner
CUST_12340_PI429285431	3.059598	A	3.2457879	A	0.87892386173628	0	lncRNA	13952-1_{1..721}	lnc-PHKB-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHKB-4:2	chr16	 48005274	 48005994	+	lnc-PHKB-4	lnc-PHKB-4:2	XLOC_011706	linc-LONP2-2	NA	NA	NA	inter
CUST_43676_PI429285431	1.2448566	A	1.316933	A	0.951267899232115	0	lncRNA	48429-1_{1..580}	"gi|397138913|ref|XR_108315.2| PREDICTED: Homo sapiens uncharacterized LOC100506206, transcript variant 1 (LOC100506206), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397138913|ref|XR_108315.2| PREDICTED: Homo sapiens uncharacterized LOC100506206, transcript variant 1 (LOC100506206), misc_RNA"	NA	NA	NA	NA	NA	XR_108315.2	NA	NA	NA	NA	NA	Unknown
CUST_27431_PI429285431	4.561473	P	4.657142	P	0.935838184163739	0	lncRNA	28996-1_{1..933}	n324601|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039767|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039767|-1.0581700|-0.2651338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324601|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039767|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039767|-1.0581700|-0.2651338	chr6	  6846253	  6847185	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002353	0.91842085	A	0.9183855	A	1.00002450305303	0	lncRNA	TCONS_00004026	NA	NA	NA	NA	XLOC_001864	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001864), lincRNA [TCONS_00004026]"	chr2:218167474-218182616	hs|2q35	Agilent_HUMAN_G3V2	TCONS_00004026	TCONS_00004026	chr2	218167474	218182616	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8432_PI429285431	1.3412657	A	1.3035799	A	1.02646597059068	0	lncRNA	10003-1_{1..3000}	lnc-ZNF83-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF83-1:2	chr19	 52900715	 52903714	-	lnc-ZNF83-1	lnc-ZNF83-1:2	ENSG00000246015	AC010332.1	ZNF528	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF880:range=chr19:52873219-528885675'pad=0,hg19_refFlat_ZNF880:range=chr19:52873219-528885675'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF528:range=chr19:52905267-529199925'pad=0,hg19_refFlat_ZNF528:range=chr19:52905267-529199925'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF534:range=chr19:52934728-529426995'pad=0,hg19_refFlat_ZNF534:range=chr19:52934728-529426995'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF766:range=chr19:52772867-527944515'pad=0,hg19_refFlat_ZNF766:range=chr19:52772867-527944515'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF480:range=chr19:52803666-528261115'pad=0,hg19_refFlat_ZNF480:range=chr19:52803666-528261115'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60chr19:52901121-52910985"	NA	inter
CUST_52067_PI429285431	2.0981805	A	2.0208004	A	1.0551002626994	0	lncRNA	55595-2_{3001..4016}	hg19_lincRNAsTranscripts_TCONS_l2_00018010 range=chr22:30920673-30941110 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018010 range=chr22:30920673-30941110 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 30923673	 30924688	-	NA	NA	NA	NA	SEC14L6	"hg19_refFlat_SIRPG:range=chr20:1610870-16383605'pad=0,hg19_refFlat_SIRPG:range=chr20:1610870-16383605'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SIRPB1:range=chr20:1579470-16005905'pad=0,hg19_refFlat_SIRPB1:range=chr20:1579470-16005905'pad=0 3'pad=0 strand=- repeatMasking=none,-99.50;hg19_refFlat_SIRPA:range=chr20:1876094-19182145'pad=0,hg19_refFlat_SIRPA:range=chr20:1876094-19182145'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.30;hg19_refFlat_SIRPB1:range=chr20:1546801-16005905'pad=0,hg19_refFlat_SIRPB1:range=chr20:1546801-16005905'pad=0 3'pad=0 strand=- repeatMasking=none,-97.60chr22:30920917-30942669"	NA	inner
LNCA_21_P0007372	1.4531708	A	1.820436	A	0.775250684626519	0	lncRNA	TCONS_00019702	NA	NA	NA	NA	XLOC_009500	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009500), lincRNA [TCONS_00019702]"	chr11:72929134-72929075	hs|11q13.4	Agilent_HUMAN_G3V2	TCONS_00019702	TCONS_00019702	chr11	 72929075	 72929134	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48685_PI429285431	0.93715084	A	0.90140414	A	1.02508724323483	0	lncRNA	52526-1_{1..535}	hg19_lincRNAsTranscripts_TCONS_l2_00015425 range=chr2:105281897-105283314 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015425 range=chr2:105281897-105283314 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	105281897	105282431	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10813_PI429285431	6.8308086	P	6.7339334	P	1.06945457096403	0	lncRNA	12348-1_{1..1934}	lnc-RP4-725G10.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP4-725G10.1.1-3:1	chr7	 56550668	 56552601	-	lnc-RP4-725G10.1.1-3	lnc-RP4-725G10.1.1-3:1	XLOC_006456	linc-LOC389493-1	NA	NA	NA	inter
CUST_44098_PI429285431	4.0637503	P	4.033396	P	1.02126289874551	0	lncRNA	48763-2_{3001..4574}	"gi|254028260|ref|NR_028049.1| Homo sapiens MTERF domain containing 2 (MTERFD2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254028260|ref|NR_028049.1| Homo sapiens MTERF domain containing 2 (MTERFD2), transcript variant 2, non-coding RNA"	Chr2	242029509	242031082	-	130916	NR_028049.1	NA	NA	NA	"hg19_refFlat_SNED1:range=chr2:241938255-2420278165'pad=0,hg19_refFlat_SNED1:range=chr2:241938255-2420278165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70"	NA	inter
CUST_39843_PI429285431	7.044836	P	6.911697	P	1.09667724556289	0	lncRNA	40745-2_{3001..3267}	n406457|NR_023348|lncRNA|Homosapiens||RefGeneNoncode|NR_023348||9.6036700|-0.1488921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406457|NR_023348|lncRNA|Homosapiens||RefGeneNoncode|NR_023348||9.6036700|-0.1488921	chr16	 90092007	 90092273	+	NA	NA	NA	NA	DBNDD1	NA	chr16:90079007-90085937	inter
CUST_31624_PI429285431	1.2007943	A	0.95362675	A	1.18687462948616	0	lncRNA	33380-1_{1..3000}	n338148|BC043440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|537|NULL|-1.0734800|-0.2979032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338148|BC043440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|537|NULL|-1.0734800|-0.2979032	chr15	 94448631	 94451630	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10204_PI429285431	0.9360951	A	1.2386554	A	0.810812198991213	0	lncRNA	11730-1_{1..508}	lnc-RXFP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RXFP3-1:1	chr5	 34049587	 34050094	+	lnc-RXFP3-1	lnc-RXFP3-1:1	XLOC_004335	linc-RAI14-2	C1QTNF3	NA	chr5:34039587-34043371	inter
CUST_7743_PI429285431	1.4621544	A	1.7810214	A	0.801699233502711	0	lncRNA	9371-1_{1..1086}	lnc-UGGT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UGGT1-1:1	chr2	129625432	129626517	+	lnc-UGGT1-1	lnc-UGGT1-1:1	ENSG00000250519	XLOC_001666	NA	NA	NA	inter
CUST_40494_PI429285431	0.94468445	A	0.95778483	A	0.990960611694952	0	lncRNA	41259-1_{1..2092}	n409429|NR_033822_5|lncRNA|Homosapiens||RefGeneNoncode|NR_033822_5||-0.9729130|-0.2607901	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409429|NR_033822_5|lncRNA|Homosapiens||RefGeneNoncode|NR_033822_5||-0.9729130|-0.2607901	chr6	  1976468	  1978559	+	NA	NA	NA	NA	GMDS	NA	chr6:1966468-2004306	inner
CUST_51246_PI429285431	0.91139066	A	0.9867646	A	0.949096087672648	0	lncRNA	54859-1_{1..1198}	hg19_lincRNAsTranscripts_TCONS_l2_00008470 range=chr15:28874186-28882273 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008470 range=chr15:28874186-28882273 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28874186	 28875383	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9569_PI429285431	0.92807615	A	0.9303953	A	0.998393779072026	0	lncRNA	11083-1_{1..395}	lnc-IL12RB2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL12RB2-2:3	chr1	 67997789	 67998183	+	lnc-IL12RB2-2	lnc-IL12RB2-2:3	XLOC_000236	linc-GADD45A	NA	NA	NA	inter
CUST_26655_PI429285431	5.9160137	P	6.6666126	P	0.594356773423027	0	lncRNA	28155-1_{1..213}	lnc-CTU2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTU2-2:1	chr16	 88764949	 88765161	+	lnc-CTU2-2	lnc-CTU2-2:1	ENSG00000259813.1	RP5-1142A6.5	RNF166	"hg19_refFlat_RNF166:range=chr16:88763976-887661255'pad=0,hg19_refFlat_RNF166:range=chr16:88763976-887661255'pad=0 3'pad=0 strand=- repeatMasking=none,-99.50;hg19_refFlat_RNF166:range=chr16:88763976-887727335'pad=0,hg19_refFlat_RNF166:range=chr16:88763976-887727335'pad=0 3'pad=0 strand=- repeatMasking=none,-99.50chr16:88762903-88772829"	NA	inner
CUST_21552_PI429285431	4.048124	P	4.562773	P	0.69996320939437	0	lncRNA	23168-1_{1..418}	lnc-AL391421.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL391421.1-5:1	chr10	 79075214	 79075631	+	lnc-AL391421.1-5	lnc-AL391421.1-5:1	ENSG00000224500.1	RP11-328K22.1	KCNMA1	NA	chr10:79065214-79085452	inner
CUST_47113_PI429285431	2.2136993	A	2.1598303	A	1.03804500940928	0	lncRNA	51195-1_{1..874}	"gi|338797719|ref|NR_040028.1| Homo sapiens ZNF790 antisense RNA 1 (ZNF790-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338797719|ref|NR_040028.1| Homo sapiens ZNF790 antisense RNA 1 (ZNF790-AS1), transcript variant 2, non-coding RNA"	Chr19	 37288465	 37289338	+	284408	NR_040028.1	NA	NA	NA	"hg19_refFlat_ZNF780A:range=chr19:40580423-405906605'pad=0,hg19_refFlat_ZNF780A:range=chr19:40580423-405906605'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF566:range=chr19:36939879-369674595'pad=0,hg19_refFlat_ZNF566:range=chr19:36939879-369674595'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00;hg19_refFlat_ZNF695:range=chr1:247150269-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247150269-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_ZNF540:range=chr19:38089349-381041645'pad=0,hg19_refFlat_ZNF540:range=chr19:38089349-381041645'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_ZNF761:range=chr19:53950522-539600025'pad=0,hg19_refFlat_ZNF761:range=chr19:53950522-539600025'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ZNF780B:range=chr19:40540264-405562395'pad=0,hg19_refFlat_ZNF780B:range=chr19:40540264-405562395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF845:range=chr19:53844561-538568415'pad=0,hg19_refFlat_ZNF845:range=chr19:53844561-538568415'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90;hg19_refFlat_ZNF841:range=chr19:52568360-525880545'pad=0,hg19_refFlat_ZNF841:range=chr19:52568360-525880545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF813:range=chr19:53987077-539953405'pad=0,hg19_refFlat_ZNF813:range=chr19:53987077-539953405'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ZNF320:range=chr19:53383849-533935085'pad=0,hg19_refFlat_ZNF320:range=chr19:53383849-533935085'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF420:range=chr19:37580021-376199605'pad=0,hg19_refFlat_ZNF420:range=chr19:37580021-376199605'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.10;hg19_refFlat_ZNF701:range=chr19:53077401-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53077401-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ZNF571:range=chr19:38055500-380775775'pad=0,hg19_refFlat_ZNF571:range=chr19:38055500-380775775'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_ZNF677:range=chr19:53740225-537548035'pad=0,hg19_refFlat_ZNF677:range=chr19:53740225-537548035'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF790:range=chr19:37309335-373165215'pad=0,hg19_refFlat_ZNF790:range=chr19:37309335-373165215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF383:range=chr19:37721356-377345665'pad=0,hg19_refFlat_ZNF383:range=chr19:37721356-377345665'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ZNF780A:range=chr19:40578764-405951695'pad=0,hg19_refFlat_ZNF780A:range=chr19:40578764-405951695'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF850:range=chr19:37238669-372535085'pad=0,hg19_refFlat_ZNF850:range=chr19:37238669-372535085'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF347:range=chr19:53643561-536570005'pad=0,hg19_refFlat_ZNF347:range=chr19:53643561-536570005'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZFP30:range=chr19:38125882-381387235'pad=0,hg19_refFlat_ZFP30:range=chr19:38125882-381387235'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90;hg19_refFlat_ZNF461:range=chr19:37129555-371556085'pad=0,hg19_refFlat_ZNF461:range=chr19:37129555-371556085'pad=0 3'pad=0 strand=- repeatMasking=none,-64.30;hg19_refFlat_ZNF765:range=chr19:53901269-539123805'pad=0,hg19_refFlat_ZNF765:range=chr19:53901269-539123805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40"	NA	inter
CUST_8829_PI429285431	2.0996253	A	1.0327388	A	2.0949074367291	0	lncRNA	10370-1_{1..435}	lnc-CCDC90B-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCDC90B-2:5	chr11	 82904509	 82904943	-	lnc-CCDC90B-2	lnc-CCDC90B-2:5	ENSG00000247137	RP11-727A23.5	ANKRD42	NA	chr11:82905291-82914642	inter
CUST_21301_PI429285431	1.3571811	A	0.9825777	A	1.29648309963832	0	lncRNA	22926-1_{1..954}	lnc-MRE11A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRE11A-1:2	chr11	 94473384	 94474337	-	lnc-MRE11A-1	lnc-MRE11A-1:2	ENSG00000255929.1	RP11-867G2.8	NA	"hg19_refFlat_FUT4:range=chr11:94277300-942788925'pad=0,hg19_refFlat_FUT4:range=chr11:94277300-942788925'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.20"	NA	inter
CUST_8646_PI429285431	1.2809645	A	1.4375052	A	0.897173740675504	0	lncRNA	10199-1_{1..3000}	lnc-AC016251.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC016251.1-2:1	chr15	 96903842	 96906841	-	lnc-AC016251.1-2	lnc-AC016251.1-2:1	ENSG00000248661	AC087477.1	NA	NA	NA	inter
CUST_25893_PI429285431	0.906804	A	0.90162086	A	1.00359914028381	0	lncRNA	27412-1_{1..304}	lnc-AP4E1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP4E1-1:1	chr15	 51041845	 51042148	+	lnc-AP4E1-1	lnc-AP4E1-1:1	ENSG00000259773.1	RP11-507J18.2	SPPL2A	"hg19_refFlat_SPPL2A:range=chr15:50999997-510577305'pad=0,hg19_refFlat_SPPL2A:range=chr15:50999997-510577305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr15:51031845-51052026"	NA	inner
CUST_3110_PI429285431	0.9245905	A	0.9204367	A	1.00288334362068	0	lncRNA	3089-2_{3001..5183}	"transcript_id ""ENST00000605536.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605536.1"" | genecode_v17"	chr8	 56452431	 56454613	+	ENSG00000270907.1	ENST00000605536.1	RP11-628E19.4	RP11-628E19.4-001	NA	NA	NA	inter
CUST_39171_PI429285431	1.7997701	A	1.6150228	A	1.13661786775406	0	lncRNA	40148-1_{1..475}	n385874|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004frv.1||2.0031400|-0.1384026	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385874|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004frv.1||2.0031400|-0.1384026	chrY	  9296351	  9296825	-	NA	NA	NA	NA	TSPY1	NA	chrY:9304564-9307358	inner
CUST_11250_PI429285431	3.2657099	P	3.6239455	P	0.780118072217861	0	lncRNA	12808-1_{1..1167}	lnc-PABPC1L2B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PABPC1L2B-1:1	chrX	 72304012	 72305178	+	lnc-PABPC1L2B-1	lnc-PABPC1L2B-1:1	XLOC_008013	linc-CDX4	PABPC1L2A	NA	chrX:72297177-72299351	inter
CUST_25425_PI429285431	8.694454	P	8.747868	P	0.963653235300964	0	lncRNA	26955-1_{1..481}	lnc-PRDM4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRDM4-3:1	chr12	108258219	108258699	-	lnc-PRDM4-3	lnc-PRDM4-3:1	ENSG00000257398.1	RP11-554D14.6	NA	NA	NA	inter
CUST_40326_PI429285431	1.935559	A	1.5933375	A	1.26770714083407	0	lncRNA	41130-1_{1..648}	n408367|NR_029461_7|lncRNA|Homosapiens||RefGeneNoncode|NR_029461_7||-1.1537600|-0.2185011	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408367|NR_029461_7|lncRNA|Homosapiens||RefGeneNoncode|NR_029461_7||-1.1537600|-0.2185011	chr6	  3063571	  3064218	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49100_PI429285431	0.9141053	A	0.9046963	A	1.00654313521068	0	lncRNA	52924-1_{1..522}	hg19_lincRNAsTranscripts_TCONS_l2_00021100 range=chr4:34124883-34127480 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021100 range=chr4:34124883-34127480 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 34124883	 34125404	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38792_PI429285431	0.9293795	A	2.0093257	A	0.473046463560133	0	lncRNA	39787-1_{1..3000}	n384484|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003huc.1||-0.0978752|-0.2945695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384484|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003huc.1||-0.0978752|-0.2945695	chr4	 99792835	 99795834	-	NA	NA	NA	NA	EIF4E	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.11;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70chr4:99799607-99805886"	NA	inter
CUST_30805_PI429285431	0.955965	A	0.91445625	A	1.02918957590929	0	lncRNA	32592-1_{1..413}	n336716|Z70716|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327967_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327967_06|-1.1213500|-0.3253659	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336716|Z70716|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327967_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327967_06|-1.1213500|-0.3253659	chr5	 70378668	 70379080	+	NA	NA	NA	NA	NA	"hg19_refFlat_OCLN:range=chr5:68809799-688494985'pad=0,hg19_refFlat_OCLN:range=chr5:68809799-688494985'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_OCLN:range=chr5:68800072-688494985'pad=0,hg19_refFlat_OCLN:range=chr5:68800072-688494985'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10"	NA	inter
CUST_31115_PI429285431	2.0456011	A	0.9017972	A	2.20962860285077	0	lncRNA	32909-1_{1..290}	n337405|DQ668391|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393201|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393201|-1.1612900|-0.5758418	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337405|DQ668391|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393201|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393201|-1.1612900|-0.5758418	chr21	 22859410	 22859699	+	NA	NA	NA	NA	NCAM2	NA	chr21:22849410-22869700	inner
CUST_49914_PI429285431	1.7803669	A	1.5362382	A	1.18437726311789	0	lncRNA	53664-1_{1..1150}	hg19_lincRNAsTranscripts_TCONS_l2_00026773 range=chr7:97595436-97601666 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026773 range=chr7:97595436-97601666 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 97595436	 97596585	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008920	1.9397492	A	3.319878	P	0.384184494814654	0	lncRNA	TCONS_00024362	NA	NA	NA	NA	XLOC_011686	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011686), lincRNA [TCONS_00024362]"	chr16:30597354-30597413	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_00024362	TCONS_00024362	chr16	 30597354	 30597413	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30265_PI429285431	6.9628963	P	7.1907434	P	0.853908208669658	0	lncRNA	32040-1_{1..306}	n335150|AY295765|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251482|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251482|1.4969500|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335150|AY295765|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251482|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251482|1.4969500|-1.0000000	chr17	 39967442	 39967747	-	NA	NA	NA	NA	FKBP10	NA	chr17:39968962-39977918	inner
CUST_47365_PI429285431	0.9128252	A	1.8971286	A	0.505469728531427	0	lncRNA	51415-1_{1..1103}	"gi|224282133|ref|NR_027021.1| Homo sapiens GRIK1 antisense RNA 1 (GRIK1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224282133|ref|NR_027021.1| Homo sapiens GRIK1 antisense RNA 1 (GRIK1-AS1), non-coding RNA"	Chr21	 31120494	 31121596	+	642976	NR_027021.1	NA	NA	NA	NA	NA	inter
CUST_5454_PI429285431	1.12852	A	1.0178434	A	1.07973449531733	0	lncRNA	5388-1_{1..375}	"transcript_id ""ENST00000566098.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566098.1"" | genecode_v17"	chr16	 22623864	 22624238	-	ENSG00000260905.1	ENST00000566098.1	RP11-105C19.1	RP11-105C19.1-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20"	NA	inter
CUST_7441_PI429285431	2.229202	A	1.9929935	A	1.17789300779043	0	lncRNA	9084-1_{1..2066}	lnc-ARFGEF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARFGEF2-1:1	chr20	 47274041	 47276106	+	lnc-ARFGEF2-1	lnc-ARFGEF2-1:1	ENSG00000245952	ENST00000456747	PREX1	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_PREX1:range=chr20:47242423-474443975'pad=0,hg19_refFlat_PREX1:range=chr20:47242423-474443975'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-57.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00chr20:47264041-47285840"	NA	inner
CUST_20232_PI429285431	0.9007402	A	0.8930886	A	1.00531777440151	0	lncRNA	21875-1_{1..1189}	lnc-THUMPD3-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-THUMPD3-3:2	chr3	  9235410	  9236598	+	lnc-THUMPD3-3	lnc-THUMPD3-3:2	ENSG00000228723.1	SRGAP3-AS2	SRGAP3	NA	chr3:9225410-9246137	inner
CUST_29862_PI429285431	4.0816765	P	3.8806386	P	1.14952504598071	0	lncRNA	31625-1_{1..430}	n333834|L20494|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192427|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192427|2.5843700|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333834|L20494|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192427|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192427|2.5843700|-1.0000000	chr22	 24999182	 24999611	+	NA	NA	NA	NA	GGT1	NA	chr22:24989182-25016512	inner
CUST_38673_PI429285431	0.9009268	A	0.897165	A	1.0026108834992	0	lncRNA	39672-2_{3001..3278}	n383972|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ykc.2||1.6080700|-0.4122339	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n383972|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ykc.2||1.6080700|-0.4122339	chr21	 17569698	 17569975	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5186_PI429285431	1.238311	A	1.558841	A	0.800775644195545	0	lncRNA	5127-1_{1..462}	"transcript_id ""ENST00000558343.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558343.1"" | genecode_v17"	chr15	 52374499	 52374960	+	ENSG00000259178.1	ENST00000558343.1	CTD-2184D3.3	CTD-2184D3.3-001	NA	NA	NA	inter
CUST_48797_PI429285431	2.0291693	A	2.6084933	A	0.669277305522654	0	lncRNA	52635-1_{1..555}	hg19_lincRNAsTranscripts_TCONS_l2_00014275 range=chr2:225016562-225034805 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014275 range=chr2:225016562-225034805 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	225016562	225017116	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22704_PI429285431	0.9162855	A	0.9056319	A	1.00741184555575	0	lncRNA	24288-1_{1..864}	lnc-CPS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPS1-1:1	chr2	211325199	211326062	+	lnc-CPS1-1	lnc-CPS1-1:1	ENSG00000234281.1	AC007970.1	LANCL1	NA	chr2:211315199-211335606	inner
CUST_9991_PI429285431	0.8952974	A	0.89214873	A	1.00218487510167	0	lncRNA	11517-1_{1..534}	lnc-TGFBRAP1-11:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGFBRAP1-11:1	chr2	104991795	104992328	-	lnc-TGFBRAP1-11	lnc-TGFBRAP1-11:1	XLOC_002236	linc-MFSD9-6	NA	NA	NA	inter
CUST_32930_PI429285431	0.9126059	A	1.0854867	A	0.88706959460319	0	lncRNA	34551-2_{3001..3166}	n339599|BC033531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2043|NULL|-1.2682700|-0.3418847	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339599|BC033531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2043|NULL|-1.2682700|-0.3418847	chr3	136474471	136474636	+	NA	NA	NA	NA	STAG1	"hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10chr3:136461471-136471245"	NA	inter
CUST_9211_PI429285431	4.530125	P	4.6188765	P	0.940336158712746	0	lncRNA	10722-1_{1..910}	lnc-USP35-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-USP35-1:5	chr11	 77884446	 77885355	+	lnc-USP35-1	lnc-USP35-1:5	ENSG00000246174	RP11-705O3.1	KCTD21	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10chr11:77882298-77894852"	NA	inner
CUST_30416_PI429285431	3.1695547	P	4.907059	P	0.29988800018285	0	lncRNA	32196-1_{1..1003}	n335550|BX248289|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267040|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267040|1.7197100|-0.0568598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335550|BX248289|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267040|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267040|1.7197100|-0.0568598	chr14	 75412914	 75413916	-	NA	NA	NA	NA	PGF	NA	chr14:75408533-75422467	inner
CUST_23746_PI429285431	5.655515	P	5.8701286	P	0.861776940307706	0	lncRNA	25309-1_{1..445}	lnc-RACGAP1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RACGAP1-1:3	chr12	 50356450	 50356894	-	lnc-RACGAP1-1	lnc-RACGAP1-1:3	ENSG00000257588.1	RP11-469H8.6	AQP2	NA	chr12:50346450-50352664	inner
CUST_18188_PI429285431	0.9874671	A	1.2701066	A	0.822085584014419	0	lncRNA	19924-1_{1..1032}	lnc-PCDH8-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-PCDH8-5:3	chr13	 54706497	 54707528	-	lnc-PCDH8-5	lnc-PCDH8-5:3	ENSG00000234787	RP11-168P6.1	NA	NA	NA	inter
LNCA_21_P0008709	0.92257977	A	0.9062971	A	1.01135021722336	0	lncRNA	TCONS_00023590	NA	NA	NA	NA	XLOC_011401	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011401), lincRNA [TCONS_00023590]"	chr15:24621959-24621900	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023590	TCONS_00023590	chr15	 24621900	 24621959	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011986	8.522393	P	9.059153	P	0.689317238542327	0	lncRNA	TCONS_l2_00015069	NA	NA	NA	NA	XLOC_l2_008405	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008405), lincRNA [TCONS_l2_00015069]"	chr2:200773693-200773634	hs|2q33.1	Agilent_HUMAN_G3V2	TCONS_l2_00015069	TCONS_l2_00015069	chr2	200773634	200773693	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51972_PI429285431	7.613016	P	8.146494	P	0.690887157598739	0	lncRNA	55514-1_{1..1535}	hg19_lincRNAsTranscripts_TCONS_00075451_GNASAS range=chr20:57394046-57402349 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00075451_GNASAS range=chr20:57394046-57402349 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	 57394046	 57395580	-	NA	NA	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20"	NA	inter
LNCA_21_P0009350	1.7562306	A	3.0009413	P	0.421992510675613	0	lncRNA	TCONS_00025741	NA	NA	NA	NA	XLOC_012558	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012558), lincRNA [TCONS_00025741]"	chr17:66794736-66794239	hs|17q24.2	Agilent_HUMAN_G3V2	TCONS_00025741	TCONS_00025741	chr17	 66794239	 66794736	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003732	0.92153573	A	2.0597615	A	0.454317955608572	0	lncRNA	TCONS_00008452	NA	NA	NA	NA	XLOC_003911	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003911), lincRNA [TCONS_00008452]"	chr4:25866472-25866413	hs|4p15.2	Agilent_HUMAN_G3V2	TCONS_00008452	TCONS_00008452	chr4	 25866413	 25866472	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28861_PI429285431	0.9020278	A	0.90411776	A	0.998552398905254	0	lncRNA	30570-1_{1..917}	n326277|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000087439|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000087439|-1.2689400|-0.3447283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326277|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000087439|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000087439|-1.2689400|-0.3447283	chr1	197219375	197220291	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_28798_PI429285431	0.91206515	A	0.9821098	A	0.952608515286181	0	lncRNA	30506-1_{1..437}	n326205|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091468|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091468|-1.1532000|-0.2983647	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326205|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091468|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091468|-1.1532000|-0.2983647	chr1	222463071	222463507	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3465_PI429285431	0.893106	A	0.8895439	A	1.00247211020968	0	lncRNA	3436-1_{1..1220}	"transcript_id ""ENST00000418343.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418343.2"" | genecode_v17"	chr9	 91242104	 91243323	-	ENSG00000228189.4	ENST00000418343.2	RP13-60M5.2	RP13-60M5.2-001	LOC286238	NA	chr9:91262094-91267075	inner
CUST_19432_PI429285431	0.8931594	A	0.88965476	A	1.00243218430798	0	lncRNA	21092-1_{1..570}	lnc-FGL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FGL2-1:1	chr7	 76887224	 76887793	-	lnc-FGL2-1	lnc-FGL2-1:1	ENSG00000250990.1	AC073635.5	CCDC146	NA	chr7:76877224-76897440	inner
CUST_39706_PI429285431	0.9174992	A	0.9033214	A	1.00987574859921	0	lncRNA	40642-2_{3001..4396}	n405572|NR_002729|lncRNA|Homosapiens||RefGeneNoncode|NR_002729||4.0029800|-0.2061064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405572|NR_002729|lncRNA|Homosapiens||RefGeneNoncode|NR_002729||4.0029800|-0.2061064	chr1	 17084400	 17085795	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21786_PI429285431	5.869991	P	3.7327235	P	4.39928022241315	0	lncRNA	23396-1_{1..564}	lnc-CCDC53-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC53-2:2	chr12	102318134	102318697	-	lnc-CCDC53-2	lnc-CCDC53-2:2	ENSG00000257202.1	RP11-512N21.3	DRAM1	NA	chr12:102308134-102317401	inter
CUST_16238_PI429285431	3.0246027	A	3.1216335	A	0.93495523724152	0	lncRNA	17945-1_{1..1212}	lnc-ZC3H12B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZC3H12B-3:1	chrX	 64271342	 64272553	+	lnc-ZC3H12B-3	lnc-ZC3H12B-3:1	XLOC_007999	linc-ZC3H12B-3	NA	NA	NA	inter
CUST_50250_PI429285431	4.349298	P	4.684704	P	0.792561064467819	0	lncRNA	53973-1_{1..664}	hg19_lincRNAsTranscripts_TCONS_l2_00029347 range=chr9:68424015-68425059 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029347 range=chr9:68424015-68425059 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 68424015	 68424678	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17870_PI429285431	0.9163755	A	0.9127441	A	1.00252026521391	0	lncRNA	19607-1_{1..355}	lnc-NUDT12-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUDT12-4:1	chr5	103716610	103716964	-	lnc-NUDT12-4	lnc-NUDT12-4:1	XLOC_004946	linc-NUDT12-4	NA	NA	NA	inter
CUST_21062_PI429285431	3.5576851	P	4.0762825	P	0.698050153495462	0	lncRNA	22689-1_{1..386}	lnc-SNX27-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNX27-2:1	chr1	151680590	151680975	+	lnc-SNX27-2	lnc-SNX27-2:1	ENSG00000227045.1	RP11-98D18.1	SNX27	NA	chr1:151670590-151671559	inner
CUST_1851_PI429285431	1.7304533	A	0.9081645	A	1.76820898837836	0	lncRNA	1841-1_{1..515}	"transcript_id ""ENST00000426240.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426240.1"" | genecode_v17"	chr4	118281822	118282336	+	ENSG00000228358.1	ENST00000426240.1	AC113617.1	AC113617.1-001	NA	NA	NA	inter
CUST_25977_PI429285431	2.7400339	A	3.045388	A	0.809243568663614	0	lncRNA	27497-1_{1..386}	lnc-TIGD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIGD1-1:1	chr2	233449016	233449401	-	lnc-TIGD1-1	lnc-TIGD1-1:1	ENSG00000237126.1	AC073254.1	NA	NA	NA	inter
CUST_14233_PI429285431	0.9309025	A	0.92798823	A	1.00202205964478	0	lncRNA	15890-1_{1..3000}	lnc-PCM1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCM1-4:4	chr8	 17677867	 17680866	+	lnc-PCM1-4	lnc-PCM1-4:4	XLOC_006726	linc-PCM1	NA	NA	NA	inter
CUST_10995_PI429285431	1.0542511	A	0.89651704	A	1.11553367084586	0	lncRNA	12539-1_{1..1016}	lnc-DHX57-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX57-1:1	chr2	 39011973	 39012988	-	lnc-DHX57-1	lnc-DHX57-1:1	XLOC_002055	linc-SRSF7	GEMIN6	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr2:39001973-39009107"	NA	inter
CUST_4138_PI429285431	3.2110758	P	2.363504	A	1.79946968759714	0	lncRNA	4097-1_{1..438}	"transcript_id ""ENST00000536141.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536141.1"" | genecode_v17"	chr12	  4135151	  4135588	+	ENSG00000256969.1	ENST00000536141.1	RP11-320N7.2	RP11-320N7.2-001	NA	NA	NA	inter
CUST_41060_PI429285431	1.3318007	A	0.9044773	A	1.34473640158839	0	lncRNA	41721-1_{1..3000}	n411753|NR_045089|lncRNA|Homosapiens||RefGeneNoncode|NR_045089||2.0965000|-0.3029527	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411753|NR_045089|lncRNA|Homosapiens||RefGeneNoncode|NR_045089||2.0965000|-0.3029527	chr5	110405777	110408776	+	NA	NA	NA	NA	TSLP	NA	chr5:110407390-110413722	inner
CUST_21512_PI429285431	1.0274379	A	1.0538658	A	0.981848338134642	0	lncRNA	23130-1_{1..569}	lnc-E2F8-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-E2F8-1:2	chr11	 19527239	 19527807	-	lnc-E2F8-1	lnc-E2F8-1:2	ENSG00000255043.1	NAV2-AS5	NAV2	NA	chr11:19517239-19537447	inner
CUST_41900_PI429285431	1.4326344	A	1.0405046	A	1.31232932021107	0	lncRNA	43619-1_{1..91}	ENST00000583390 ncrna:miRNA chromosome:GRCh37:13:100295313:100295403:1 gene:ENSG00000263615 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583390 ncrna:miRNA chromosome:GRCh37:13:100295313:100295403:1 gene:ENSG00000263615 gene_biotype:miRNA transcript_biotype:miRNA	chr13	100295313	100295403	+	ENSG00000263615	ENST00000583390	NA	NA	CLYBL	NA	chr13:100285313-100305403	inner
CUST_21463_PI429285431	1.5212698	A	1.8693929	A	0.785605480906071	0	lncRNA	23082-1_{1..779}	lnc-GLIPR1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLIPR1-4:1	chr12	 76427044	 76427822	+	lnc-GLIPR1-4	lnc-GLIPR1-4:1	ENSG00000257839.1	RP11-290L1.2	PHLDA1	NA	chr12:76419227-76425556	inter
CUST_2001_PI429285431	11.9863825	P	12.17895	P	0.875047052580605	0	lncRNA	1992-1_{1..2503}	"transcript_id ""ENST00000605834.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605834.1"" | genecode_v17"	chr4	185395956	185398458	+	ENSG00000271646.1	ENST00000605834.1	RP11-326I11.3	RP11-326I11.3-001	IRF2	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30chr4:185385956-185395726"	NA	inter
CUST_45679_PI429285431	6.4816976	P	6.6874847	P	0.867065507828196	0	lncRNA	50054-1_{1..1293}	"gi|410170607|ref|XR_110455.3| PREDICTED: Homo sapiens uncharacterized LOC100505890 (LOC100505890), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410170607|ref|XR_110455.3| PREDICTED: Homo sapiens uncharacterized LOC100505890 (LOC100505890), misc_RNA"	NA	NA	NA	NA	NA	XR_110455.3	NA	NA	NA	NA	NA	Unknown
CUST_39263_PI429285431	5.857341	P	6.0318503	P	0.886068844077628	0	lncRNA	40235-1_{1..2184}	n386165|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010cic.1||1.2025100|-0.0983789	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n386165|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010cic.1||1.2025100|-0.0983789	chr16	 88809228	 88811411	+	NA	NA	NA	NA	FAM38A	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-61.70chr16:88799228-88822156"	NA	inner
CUST_2294_PI429285431	4.77803	P	4.848254	P	0.95249009821736	0	lncRNA	2286-1_{1..472}	"transcript_id ""ENST00000518276.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518276.1"" | genecode_v17"	chr5	104079393	104079864	-	ENSG00000251574.2	ENST00000518276.1	RP11-6N13.1	RP11-6N13.1-005	NA	NA	NA	inter
CUST_16143_PI429285431	0.9156579	A	0.91983986	A	0.997105483431097	0	lncRNA	17848-1_{1..2054}	lnc-KLK4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLK4-1:2	chr19	 51390975	 51393028	-	lnc-KLK4-1	lnc-KLK4-1:2	XLOC_013385	linc-KLK15	KLK2	NA	chr19:51380975-51383823	inter
CUST_50833_PI429285431	11.089432	P	10.986198	P	1.07417868545028	0	lncRNA	54479-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00004569 range=chr11:65266464-65272757 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004569 range=chr11:65266464-65272757 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65266464	 65269463	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32656_PI429285431	0.9162082	A	0.9002554	A	1.01111899998795	0	lncRNA	34308-1_{1..2169}	n339280|AK000115|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1712|NULL|1.9400600|-0.2890536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339280|AK000115|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1712|NULL|1.9400600|-0.2890536	chr3	 32303233	 32305401	+	NA	NA	NA	NA	CMTM8	NA	chr3:32293233-32315396	inner
CUST_49090_PI429285431	5.3689528	P	4.964058	P	1.32399236256585	0	lncRNA	52914-1_{1..1537}	hg19_lincRNAsTranscripts_TCONS_l2_00021062 range=chr4:9569105-9647456 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021062 range=chr4:9569105-9647456 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  9569105	  9570641	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18114_PI429285431	7.753044	P	7.751781	P	1.00087582820277	0	lncRNA	19848-1_{1..1104}	lnc-CEBPB-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEBPB-1:2	chr20	 48789460	 48790563	+	lnc-CEBPB-1	lnc-CEBPB-1:2	XLOC_013559	linc-CEBPB-1	NA	NA	NA	inter
CUST_14829_PI429285431	2.233143	A	1.2207141	A	2.01730454678597	0	lncRNA	16491-2_{3001..6000}	lnc-CCDC54-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC54-2:12	chr3	107007167	107010166	+	lnc-CCDC54-2	lnc-CCDC54-2:12	XLOC_002746	linc-CCDC54	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.60"	NA	inter
CUST_36038_PI429285431	5.6040497	P	6.127906	P	0.695510258878065	0	lncRNA	37362-1_{1..3000}	n344643|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_191|NULL|-1.3262900|-0.2857767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344643|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_191|NULL|-1.3262900|-0.2857767	chr2	216475716	216478715	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_TBX1:range=chr22:19747167-197543905'pad=0,hg19_refFlat_TBX1:range=chr22:19747167-197543905'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40"	NA	inter
CUST_24253_PI429285431	0.9252185	A	0.907105	A	1.01263447040346	0	lncRNA	25804-1_{1..575}	lnc-CAST-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CAST-4:3	chr5	 95966671	 95967245	+	lnc-CAST-4	lnc-CAST-4:3	ENSG00000251314.1	CTD-2337A12.1	NA	NA	NA	inter
CUST_10374_PI429285431	1.2900164	A	1.7340573	A	0.735072828790482	0	lncRNA	11902-1_{1..619}	lnc-ZNF516-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF516-4:1	chr18	 73958676	 73959294	-	lnc-ZNF516-4	lnc-ZNF516-4:1	XLOC_012891	linc-C18orf62-6	NA	NA	NA	inter
CUST_16894_PI429285431	6.4635186	P	6.8676934	P	0.755668400220385	0	lncRNA	18602-1_{1..431}	lnc-NDFIP2-12:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDFIP2-12:1	chr13	 83239531	 83239961	+	lnc-NDFIP2-12	lnc-NDFIP2-12:1	XLOC_010457	linc-SLITRK5-6	NA	NA	NA	inter
CUST_41776_PI429285431	7.506106	P	7.578391	P	0.951130364872477	0	lncRNA	43343-1_{1..68}	ENST00000581102 ncrna:miRNA chromosome:GRCh37:2:134884696:134884763:1 gene:ENSG00000263813 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581102 ncrna:miRNA chromosome:GRCh37:2:134884696:134884763:1 gene:ENSG00000263813 gene_biotype:miRNA transcript_biotype:miRNA	chr2	134884696	134884763	+	ENSG00000263813	ENST00000581102	NA	NA	NA	NA	NA	inter
CUST_4610_PI429285431	1.873667	A	1.0414592	A	1.78040789084008	0	lncRNA	4558-1_{1..3000}	"transcript_id ""ENST00000423211.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423211.1"" | genecode_v17"	chr13	 44599455	 44602454	+	ENSG00000233725.2	ENST00000423211.1	LINC00284	LINC00284-002	NA	NA	NA	inter
CUST_20788_PI429285431	2.1439693	A	2.0909915	A	1.037403973008	0	lncRNA	22421-1_{1..370}	lnc-AP3S1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP3S1-5:1	chr5	114524260	114524629	+	lnc-AP3S1-5	lnc-AP3S1-5:1	ENSG00000249791.1	CTC-428G20.2	TRIM36	NA	chr5:114514260-114516243	inter
CUST_2187_PI429285431	0.90196574	A	0.9281745	A	0.981997488565412	0	lncRNA	2179-1_{1..501}	"transcript_id ""ENST00000518473.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518473.1"" | genecode_v17"	chr5	 70668503	 70669003	-	ENSG00000253985.1	ENST00000518473.1	RP11-136K7.3	RP11-136K7.3-001	NA	NA	NA	inter
CUST_189_PI429285431	5.6642814	P	6.2220283	P	0.679362316123031	0	lncRNA	179-1_{1..483}	"transcript_id ""ENST00000412797.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412797.1"" | genecode_v17"	chr1	 25907969	 25908451	+	ENSG00000225643.1	ENST00000412797.1	RP11-70P17.1	RP11-70P17.1-001	NA	NA	NA	inter
CUST_50198_PI429285431	0.9224727	A	0.9264318	A	0.997259522979251	0	lncRNA	53923-1_{1..709}	hg19_lincRNAsTranscripts_TCONS_l2_00029722 range=chr9:42411969-42429625 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029722 range=chr9:42411969-42429625 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 42411969	 42412677	+	NA	NA	NA	NA	ANKRD20A2	NA	chr9:42401969-42411410	inter
CUST_5324_PI429285431	0.9495083	A	0.92971516	A	1.01381410421481	0	lncRNA	5263-1_{1..1332}	"transcript_id ""ENST00000555772.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555772.1"" | genecode_v17"	chr15	 94607598	 94608929	-	ENSG00000258754.3	ENST00000555772.1	CTD-3049M7.1	CTD-3049M7.1-003	NA	NA	NA	inter
CUST_26643_PI429285431	6.297641	P	6.368501	P	0.952070293492459	0	lncRNA	28145-1_{1..3000}	lnc-SAP30-5:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:8	chr4	174457999	174460998	+	lnc-SAP30-5	lnc-SAP30-5:8	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174447999-174451378	inter
CUST_18471_PI429285431	3.580305	P	3.6410158	P	0.958791616838236	0	lncRNA	20192-1_{1..2146}	lnc-GRPEL1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GRPEL1-1:2	chr4	  7102967	  7105112	-	lnc-GRPEL1-1	lnc-GRPEL1-1:2	ENSG00000245468	RP11-367J11.4	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30"	NA	inter
CUST_6601_PI429285431	1.0365841	A	0.9144104	A	1.08837347358445	0	lncRNA	6549-1_{1..465}	"transcript_id ""ENST00000592125.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592125.1"" | genecode_v17"	chr19	 57046668	 57047132	+	ENSG00000267224.1	ENST00000592125.1	AC005498.4	AC005498.4-001	ZNF471	NA	chr19:57036668-57040270	inter
CUST_35576_PI429285431	4.5306187	P	4.5589566	P	0.980549318289812	0	lncRNA	36991-1_{1..1841}	n342708|BC036881|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5210|NULL|-0.4540120|-0.0863147	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342708|BC036881|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5210|NULL|-0.4540120|-0.0863147	chr17	 42634925	 42636765	-	NA	NA	NA	NA	FZD2	"hg19_refFlat_FZD2:range=chr17:42635057-426367545'pad=0,hg19_refFlat_FZD2:range=chr17:42635057-426367545'pad=0 3'pad=0 strand=+ repeatMasking=none,-113.50chr17:42634812-42638630"	NA	inner
CUST_7978_PI429285431	0.9205726	A	0.97445816	A	0.963338306609294	0	lncRNA	9590-1_{1..2142}	lnc-CENPV-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CENPV-1:1	chr17	 16253943	 16256084	-	lnc-CENPV-1	lnc-CENPV-1:1	ENSG00000250690	ENST00000504164	CENPV	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-17.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90chr17:16245848-16256812"	NA	inner
CUST_6551_PI429285431	9.062098	P	9.371036	P	0.807235764817404	0	lncRNA	6499-1_{1..454}	"transcript_id ""ENST00000598924.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598924.1"" | genecode_v17"	chr19	 49016464	 49016917	-	ENSG00000269814.1	ENST00000598924.1	CTC-273B12.10	CTC-273B12.10-001	LMTK3	NA	chr19:49006464-49016446	inter
CUST_50039_PI429285431	5.66739	P	3.531472	P	4.39516705040072	0	lncRNA	53775-1_{1..303}	hg19_lincRNAsTranscripts_TCONS_l2_00028186 range=chr8:47491107-47501771 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028186 range=chr8:47491107-47501771 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 47491107	 47491409	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4940_PI429285431	4.628472	P	4.7158256	P	0.941247739417907	0	lncRNA	4884-1_{1..467}	"transcript_id ""ENST00000553921.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553921.1"" | genecode_v17"	chr14	 88484949	 88485415	-	ENSG00000258826.1	ENST00000553921.1	RP11-300J18.1	RP11-300J18.1-001	GPR65	NA	chr14:88474949-88481155	inter
CUST_24338_PI429285431	1.1378541	A	1.2097249	A	0.951403475089385	0	lncRNA	25891-1_{1..641}	lnc-CDH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CDH1-1:1	chr16	 68971070	 68971710	+	lnc-CDH1-1	lnc-CDH1-1:1	ENSG00000266801.1	RP11-521L9.2	TMCO7	NA	chr16:68961070-68981628	inner
CUST_38047_PI429285431	0.9106261	A	0.90424967	A	1.00442958621816	0	lncRNA	39126-1_{1..593}	n377620|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030004||-1.1543500|-0.3308589	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377620|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030004||-1.1543500|-0.3308589	chr6	  2489874	  2490466	-	NA	NA	NA	NA	NA	"hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00"	NA	inter
CUST_18238_PI429285431	1.1311011	A	1.0735221	A	1.04071785632538	0	lncRNA	19972-1_{1..587}	lnc-C14orf101-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C14orf101-4:3	chr14	 57618762	 57619348	+	lnc-C14orf101-4	lnc-C14orf101-4:3	ENSG00000248550	RP11-1077A2.1	NA	NA	NA	inter
CUST_29323_PI429285431	4.062571	P	4.7041354	P	0.641017478419799	0	lncRNA	31074-1_{1..298}	n332519|DQ673951|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468529|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468529|-1.0535000|-0.1878432	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332519|DQ673951|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468529|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468529|-1.0535000|-0.1878432	chr9	102135203	102135500	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014353	2.2516952	A	2.672482	A	0.747017113825958	0	lncRNA	XR_109418	XR_109418	XR_109418	NA	NA	LOC100506882	uncharacterized LOC100506882	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506882 (LOC100506882), miscRNA [XR_109418]"	chr17:58498696-58498637	hs|17q23.2	Agilent_HUMAN_G3V2	XR_109418	XR_109418	chr17	 58498637	 58498696	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009766	1.7684865	A	1.7836733	A	0.989528524072362	0	lncRNA	TCONS_00027327	NA	NA	NA	NA	XLOC_013323	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013323), lincRNA [TCONS_00027327]"	chr19:36372769-36371013	hs|19q13.12	Agilent_HUMAN_G3V2	TCONS_00027327	TCONS_00027327	chr19	 36371013	 36372769	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010632	3.4983976	P	3.1916323	P	1.23693123631225	0	lncRNA	TCONS_l2_00001386	NA	NA	NA	NA	XLOC_l2_001011	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001011), lincRNA [TCONS_l2_00001386]"	chr1:95145177-95145118	hs|1p21.3	Agilent_HUMAN_G3V2	TCONS_l2_00001386	TCONS_l2_00001386	chr1	 95145118	 95145177	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16043_PI429285431	0.9272578	A	0.92976224	A	0.998265560357049	0	lncRNA	17742-1_{1..548}	lnc-LINGO2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LINGO2-2:2	chr9	 29212920	 29213467	-	lnc-LINGO2-2	lnc-LINGO2-2:2	XLOC_007662	linc-LINGO2-1	NA	NA	NA	inner
CUST_10635_PI429285431	0.93222713	A	0.92613864	A	1.00422913734486	0	lncRNA	12168-1_{1..1126}	lnc-FAM75A5-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-FAM75A5-3:1	chr9	 41286244	 41287369	+	lnc-FAM75A5-3	lnc-FAM75A5-3:1	XLOC_007358	linc-FAM75A7-16	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
CUST_48052_PI429285431	3.568914	A	2.282909	A	2.43851863939956	0	lncRNA	51930-1_{1..2117}	"gi|310113534|ref|XR_111953.1| PREDICTED: Homo sapiens uncharacterized LOC100505799 (LOC100505799), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310113534|ref|XR_111953.1| PREDICTED: Homo sapiens uncharacterized LOC100505799 (LOC100505799), misc_RNA"	NA	NA	NA	NA	NA	XR_111953.1	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60"	NA	Unknown
CUST_9682_PI429285431	10.128829	P	11.187735	P	0.479995904034528	0	lncRNA	11199-1_{1..2498}	lnc-PRPS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRPS1-1:1	chrX	106949529	106952026	+	lnc-PRPS1-1	lnc-PRPS1-1:1	XLOC_008043	linc-MID2	TSC22D3	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10chrX:106956451-106961858"	NA	inter
CUST_38482_PI429285431	12.177341	P	11.88945	P	1.22085426992981	0	lncRNA	39500-1_{1..583}	n382987|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002eea.2||-1.1314700|-0.3221350	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382987|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002eea.2||-1.1314700|-0.3221350	chr16	 35036458	 35037040	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47442_PI429285431	8.6484785	P	9.138971	P	0.711782071724312	0	lncRNA	51475-1_{1..1534}	"gi|374717339|ref|NR_033687.2| Homo sapiens solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 (SLC25A1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|374717339|ref|NR_033687.2| Homo sapiens solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 (SLC25A1), transcript variant 2, non-coding RNA"	NW_003871096.1	    28792	    30325	-	6576	NR_033687.2	NA	NA	NA	NA	NA	Unknown
CUST_34112_PI429285431	5.4705772	P	5.4077735	P	1.04449363438648	0	lncRNA	35635-1_{1..1478}	n340942|BC019904|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3407|NULL|-0.8790520|-0.1516673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340942|BC019904|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3407|NULL|-0.8790520|-0.1516673	chr11	  2349978	  2351455	-	NA	NA	NA	NA	CD81	NA	chr11:2398547-2409222	inner
CUST_11169_PI429285431	1.2213207	A	0.90872586	A	1.24193945210335	0	lncRNA	12726-1_{1..1313}	lnc-C15orf2-2:21	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-2:21	chr15	 24832714	 24834026	+	lnc-C15orf2-2	lnc-C15orf2-2:21	XLOC_011181	linc-C15orf2-1	NA	NA	NA	inter
CUST_9399_PI429285431	0.9011439	A	1.1720868	A	0.828777705786379	0	lncRNA	10902-1_{1..661}	lnc-CYBB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CYBB-1:1	chrX	 37755653	 37756313	+	lnc-CYBB-1	lnc-CYBB-1:1	XLOC_007952	linc-CXorf27-1	NA	NA	NA	inter
CUST_27742_PI429285431	0.89610493	A	0.9020509	A	0.995887049105174	0	lncRNA	29324-1_{1..573}	n324959|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079676|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079676|-0.8856320|-0.1711390	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324959|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079676|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079676|-0.8856320|-0.1711390	chr20	 48222533	 48223105	+	NA	NA	NA	NA	LOC728671	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80chr20:48212533-48236503"	NA	inter
CUST_50637_PI429285431	0.9224308	A	1.2158452	A	0.8159686334995	0	lncRNA	54319-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00003441 range=chr10:27225454-27235683 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003441 range=chr10:27225454-27235683 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 27225454	 27228453	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_50609_PI429285431	6.5679436	P	6.354984	P	1.15906349402564	0	lncRNA	54294-3_{6001..6101}	hg19_lincRNAsTranscripts_TCONS_l2_00002834 range=chr10:973603-982331 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002834 range=chr10:973603-982331 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	   979603	   979703	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50"	NA	inner
CUST_45678_PI429285431	9.861691	P	9.7640705	P	1.07000719670086	0	lncRNA	50053-1_{1..1863}	"gi|375493578|ref|NR_046344.1| Homo sapiens calcium homeostasis modulator 2 (CALHM2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|375493578|ref|NR_046344.1| Homo sapiens calcium homeostasis modulator 2 (CALHM2), transcript variant 3, non-coding RNA"	Chr10	105206543	105208405	-	51063	NR_046344.1	NA	NA	NA	NA	NA	inter
CUST_11668_PI429285431	0.9146072	A	0.9124326	A	1.0015084544334	0	lncRNA	13246-1_{1..578}	lnc-HDHD1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HDHD1-1:2	chrX	  6701362	  6701939	-	lnc-HDHD1-1	lnc-HDHD1-1:2	XLOC_008109	linc-VCX3A-1	NA	NA	NA	inter
CUST_10416_PI429285431	1.252862	A	1.1757667	A	1.05489199768955	0	lncRNA	11943-1_{1..1067}	lnc-SIK1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIK1-3:1	chr21	 44874118	 44875184	-	lnc-SIK1-3	lnc-SIK1-3:1	XLOC_014106	linc-SIK1-1	NA	NA	NA	inter
CUST_234_PI429201921	3.0896254	A	4.0571876	P	0.51136942184259	0	lncRNA	181-1_{1..3000}	TC22001193.hg.1	TCONS_l2_00018301-XLOC_l2_009446 // Broad TUCP // linc-CCT8L2-1 chr22:-:17075906-17082026 // chr22 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr22:-:17075906-17082026	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00018301-XLOC_l2_009446	linc-CCT8L2-1	chr22	 17075906	 17082026	-	NA	NA	NA	NA	IFI6	NA	chr1:27992572-27998724	Unknown
LNCA_21_P0001024	0.9431715	A	0.92567587	A	1.01220087738423	0	lncRNA	ENST00000430905	NA	NA	NA	NA	XLOC_000443	NA	ENST00000430905	NA	NA	"BROAD Institute lincRNA (XLOC_000443), lincRNA [TCONS_00000325]"	chr1:162009023-162009181	hs|1q23.3	Agilent_HUMAN_G3V2	ENST00000430905	ENST00000430905	chr1	162009023	162009181	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39169_PI429285431	2.1679087	A	2.6785574	A	0.701906758335758	0	lncRNA	40146-1_{1..934}	n385872|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004frp.1||2.0916900|-0.1256268	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n385872|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004frp.1||2.0916900|-0.1256268	chrY	  9187188	  9188121	-	NA	NA	NA	NA	FAM197Y8	NA	chrY:9190859-9193055	inter
CUST_11862_PI429285431	4.9984884	P	4.820489	P	1.13131399234554	0	lncRNA	13441-1_{1..521}	lnc-PTGFR-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTGFR-1:3	chr1	 78717178	 78717698	+	lnc-PTGFR-1	lnc-PTGFR-1:3	XLOC_000264	linc-PTGFR	NA	NA	NA	inter
CUST_2806_PI429285431	5.9440827	P	6.1722445	P	0.853721963067614	0	lncRNA	2790-1_{1..482}	"transcript_id ""ENST00000446024.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446024.1"" | genecode_v17"	chr7	 36069221	 36069702	+	ENSG00000232930.1	ENST00000446024.1	AC083864.3	AC083864.3-001	NA	NA	NA	inter
CUST_25996_PI429285431	0.9158159	A	0.9134072	A	1.00167097814452	0	lncRNA	27515-1_{1..577}	lnc-PAX6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAX6-1:1	chr11	 31789183	 31789759	-	lnc-PAX6-1	lnc-PAX6-1:1	ENSG00000228061.1	Z83001.1	ELP4	NA	chr11:31779183-31799501	inner
LNCA_19_P00322080	3.4299297	P	2.3951075	A	2.04886112564624	0	lncRNA	XR_132651	XR_132651	XR_132651	NA	NA	LOC100506694	uncharacterized LOC100506694	NA	THC2516977	NA	"PREDICTED: Homo sapiens hypothetical LOC100506694, transcript variant 4 (LOC100506694), miscRNA [XR_132651]"	chr19:28288861-28288920	hs|19q11	Agilent_HUMAN_G3V2	XR_132651	XR_132651	chr19	 28288861	 28288920	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51345_PI429285431	4.0676556	P	4.3195424	P	0.839797384440068	0	lncRNA	54944-2_{3001..3499}	hg19_lincRNAsTranscripts_TCONS_l2_00008748 range=chr15:78181465-78191653 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008748 range=chr15:78181465-78191653 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 78184465	 78184963	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36069_PI429285431	0.9491507	A	0.9257002	A	1.01638747344914	0	lncRNA	37376-4_{9001..12000}	n344659|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_208|NULL|-1.3129200|-0.4214645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n344659|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_208|NULL|-1.3129200|-0.4214645	chr1	 23616825	 23619824	-	NA	NA	NA	NA	HNRNPR	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20chr1:23636276-23646128"	NA	inter
CUST_10712_PI429285431	0.9130279	A	1.2524161	A	0.790376413711867	0	lncRNA	12248-1_{1..951}	lnc-APOB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APOB-2:1	chr2	 21319226	 21320176	-	lnc-APOB-2	lnc-APOB-2:1	XLOC_002012	linc-APOB-4	NA	NA	NA	inter
CUST_32828_PI429285431	5.230119	P	5.3290205	P	0.93374369408723	0	lncRNA	34463-1_{1..3000}	n339478|AK026743|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1918|NULL|-1.2072600|-0.3454749	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339478|AK026743|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1918|NULL|-1.2072600|-0.3454749	chr21	 36314113	 36317112	-	NA	NA	NA	NA	RUNX1	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80chr21:36304113-36327337"	NA	inner
CUST_38796_PI429285431	4.708025	P	4.7899594	P	0.944790000051739	0	lncRNA	39790-2_{3001..3301}	n384489|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hxf.1||-1.2171600|-0.3781603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384489|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hxf.1||-1.2171600|-0.3781603	chr4	105392565	105392865	-	NA	NA	NA	NA	CXXC4	NA	chr4:105393330-105402866	inner
CUST_41430_PI429285431	12.083267	P	11.915545	P	1.12328343116917	0	lncRNA	42592-1_{1..77}	ENST00000584126 ncrna:miRNA chromosome:GRCh37:X:47446828:47446904:1 gene:ENSG00000263858 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584126 ncrna:miRNA chromosome:GRCh37:X:47446828:47446904:1 gene:ENSG00000263858 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 47446828	 47446904	+	ENSG00000263858	ENST00000584126	NA	NA	SYN1	NA	chrX:47436828-47456904	inner
CUST_43306_PI429285431	0.9152536	A	0.9045829	A	1.00742378629455	0	lncRNA	48138-1_{1..3000}	ENST00000588930 havana:lincRNA chromosome:GRCh37:19:32962847:32967434:1 gene:ENSG00000267569 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000588930 havana:lincRNA chromosome:GRCh37:19:32962847:32967434:1 gene:ENSG00000267569 gene_biotype:lincRNA transcript_biotype:lincRNA	chr19	 32962847	 32965846	+	ENSG00000267569	ENST00000588930	NA	NA	DPY19L3	"hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr19:32952847-32976799"	NA	inner
CUST_45867_PI429285431	1.210533	A	0.9303558	A	1.21434402786699	0	lncRNA	50195-2_{3001..4505}	"gi|253735744|ref|NR_028027.1| Homo sapiens CREB/ATF bZIP transcription factor (CREBZF), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|253735744|ref|NR_028027.1| Homo sapiens CREB/ATF bZIP transcription factor (CREBZF), transcript variant 5, non-coding RNA"	Chr11	 85371608	 85373112	-	58487	NR_028027.1	NA	NA	NA	NA	NA	inter
CUST_28520_PI429285431	0.9155633	A	0.92105556	A	0.996200292692621	0	lncRNA	30189-1_{1..310}	n325865|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050714|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050714|-1.0896000|-0.4322707	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325865|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050714|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050714|-1.0896000|-0.4322707	chr10	123364928	123365237	-	NA	NA	NA	NA	FGFR2	NA	chr10:123354928-123357972	inter
LNCA_21_P0010264	3.5529563	P	5.049386	P	0.354429428042522	0	lncRNA	TCONS_00029062	NA	NA	NA	NA	XLOC_013983	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013983), lincRNA [TCONS_00029062]"	chr21:46767554-46773289	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029062	TCONS_00029062	chr21	 46767554	 46773289	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13143_PI429285431	2.4666326	A	2.739634	A	0.827596012973635	0	lncRNA	14771-1_{1..373}	lnc-SEL1L-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEL1L-9:1	chr14	 84687871	 84688243	-	lnc-SEL1L-9	lnc-SEL1L-9:1	XLOC_011091	linc-SEL1L-5	NA	NA	NA	inter
CUST_40860_PI429285431	0.9159736	A	1.1126995	A	0.872528463139573	0	lncRNA	41559-1_{1..1084}	n410644|NR_037885|lncRNA|Homosapiens||RefGeneNoncode|NR_037885||-0.5529400|-0.2196366	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410644|NR_037885|lncRNA|Homosapiens||RefGeneNoncode|NR_037885||-0.5529400|-0.2196366	chr2	104995307	104996390	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34417_PI429285431	0.92429996	A	0.9111871	A	1.00913057361967	0	lncRNA	35897-1_{1..2741}	n341287|BC041378|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3756|NULL|-0.9118040|-0.2843608	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341287|BC041378|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3756|NULL|-0.9118040|-0.2843608	chr7	103085653	103088393	+	NA	NA	NA	NA	SLC26A5	NA	chr7:103075653-103086624	inner
LNCA_21_P0007981	0.9344881	A	0.9169602	A	1.01222351840447	0	lncRNA	ENST00000412722	XR_110111	XR_110111	NA	Hs.183176	XLOC_010555	NA	ENST00000412722	THC2674403	NA	"PREDICTED: Homo sapiens hypothetical LOC100507040 (LOC100507040), miscRNA [XR_110111]"	chr13:30890556-30890497	hs|13q12.3	Agilent_HUMAN_G3V2	ENST00000412722	ENST00000412722	chr13	 30890497	 30890556	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27818_PI429285431	0.89930886	A	1.7178227	A	0.567025750781484	0	lncRNA	29404-1_{1..512}	n325046|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078250|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078250|-1.3435300|-0.5098273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325046|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078250|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078250|-1.3435300|-0.5098273	chr20	 20899088	 20899599	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48165_PI429285431	2.5072484	A	2.9431372	A	0.73923819241768	0	lncRNA	52031-1_{1..995}	"gi|410169952|ref|XR_172435.1| PREDICTED: Homo sapiens uncharacterized LOC101059954 (LOC101059954), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410169952|ref|XR_172435.1| PREDICTED: Homo sapiens uncharacterized LOC101059954 (LOC101059954), misc_RNA"	NA	NA	NA	NA	NA	XR_172435.1	NA	NA	NA	NA	NA	Unknown
CUST_1852_PI429285431	0.91723543	A	0.9069607	A	1.00714732117413	0	lncRNA	1842-1_{1..601}	"transcript_id ""ENST00000448804.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448804.1"" | genecode_v17"	chr4	118282505	118283105	+	ENSG00000228358.1	ENST00000448804.1	AC113617.1	AC113617.1-002	NA	NA	NA	inter
CUST_27991_PI429285431	7.7368336	P	7.835993	P	0.933576790501217	0	lncRNA	29599-1_{1..284}	n325244|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328232|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328232|-1.1860100|-0.2502938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325244|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328232|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328232|-1.1860100|-0.2502938	chr2	 77733046	 77733329	-	NA	NA	NA	NA	LRRTM4	NA	chr2:77723046-77745302	inner
CUST_34460_PI429285431	2.1093085	A	2.6800857	A	0.673253999374417	0	lncRNA	35934-1_{1..3000}	n341336|BX537891|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3805|NULL|3.3123800|-0.2442902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341336|BX537891|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3805|NULL|3.3123800|-0.2442902	chr7	137665745	137668744	-	NA	NA	NA	NA	CREB3L2	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50chr7:137655745-137678441"	NA	inner
CUST_7740_PI429285431	0.9148152	A	0.9108382	A	1.00276044938035	0	lncRNA	9368-2_{3001..3715}	lnc-LSM11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LSM11-1:1	chr5	157278967	157279681	+	lnc-LSM11-1	lnc-LSM11-1:1	ENSG00000245834	ENST00000500739	CLINT1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CLINT1:range=chr5:157214654-1572859785'pad=0,hg19_refFlat_CLINT1:range=chr5:157214654-1572859785'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CLINT1:range=chr5:157214654-1572445425'pad=0,hg19_refFlat_CLINT1:range=chr5:157214654-1572445425'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60chr5:157265967-157286183"	NA	inner
CUST_37711_PI429285431	6.2446938	P	6.5358386	P	0.817253298528283	0	lncRNA	38805-1_{1..1097}	n346207|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1757|NULL|-1.3045200|-0.2558781	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346207|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1757|NULL|-1.3045200|-0.2558781	chr16	 33962500	 33963596	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42770_PI429285431	6.4871016	P	6.583666	P	0.935257542028024	0	lncRNA	45753-1_{1..143}	ENST00000517097 ncrna:snoRNA chromosome:GRCh37:1:175937534:175937676:-1 gene:ENSG00000252906 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517097 ncrna:snoRNA chromosome:GRCh37:1:175937534:175937676:-1 gene:ENSG00000252906 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	175937534	175937676	-	ENSG00000252906	ENST00000517097	NA	NA	RFWD2	NA	chr1:175927534-175947676	inner
CUST_9155_PI429285431	0.90126354	A	0.8947815	A	1.00450311644341	0	lncRNA	10674-1_{1..601}	lnc-LGALSL-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LGALSL-2:4	chr2	 64478935	 64479535	+	lnc-LGALSL-2	lnc-LGALSL-2:4	ENSG00000225889	AC074289.1	NA	NA	NA	inter
LNCA_21_P0014105	0.9260659	A	0.90998733	A	1.01120715027355	0	lncRNA	ENST00000413820	XR_108454	XR_108454	NA	Hs.678184	LOC100505565	NA	ENST00000413820	THC2626620	NA	"PREDICTED: Homo sapiens hypothetical LOC100505565 (LOC100505565), miscRNA [XR_108454]"	chr2:242750018-242749959	hs|2q37.3	Agilent_HUMAN_G3V2	ENST00000413820	ENST00000413820	chr2	242749959	242750018	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006170	0.92573565	A	1.4124032	A	0.71367169011839	0	lncRNA	TCONS_00016042	NA	NA	NA	NA	XLOC_007438	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007438), lincRNA [TCONS_00016042]"	chr9:89612959-89613018	hs|9q21.33	Agilent_HUMAN_G3V2	TCONS_00016042	TCONS_00016042	chr9	 89612959	 89613018	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14170_PI429285431	2.8569844	A	2.1596794	A	1.62147299896646	0	lncRNA	15822-1_{1..2136}	lnc-SLC4A1AP-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC4A1AP-1:5	chr2	 27961140	 27963275	+	lnc-SLC4A1AP-1	lnc-SLC4A1AP-1:5	XLOC_001406	linc-MRPL33	NA	NA	NA	inter
CUST_48072_PI429285431	2.7365444	A	2.6058698	A	1.09480550945956	0	lncRNA	51948-1_{1..563}	"gi|410170126|ref|XR_172467.1| PREDICTED: Homo sapiens phospholipid scramblase-like (LOC440981), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170126|ref|XR_172467.1| PREDICTED: Homo sapiens phospholipid scramblase-like (LOC440981), misc_RNA"	NA	NA	NA	NA	NA	XR_172467.1	NA	NA	NA	NA	NA	Unknown
CUST_38797_PI429285431	2.0399923	A	1.8449665	A	1.1447446321097	0	lncRNA	39791-1_{1..1821}	n384498|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003icx.1||0.5882660|-0.1321228	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384498|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003icx.1||0.5882660|-0.1321228	chr4	120299286	120301106	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CIC:range=chr19:42788857-427993435'pad=0,hg19_refFlat_CIC:range=chr19:42788857-427993435'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30"	NA	inter
CUST_34709_PI429285431	0.91493535	A	0.90603614	A	1.00618752646307	0	lncRNA	36158-2_{3001..6000}	n341617|AL833303|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4088|NULL|-1.0298700|-0.3703548	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341617|AL833303|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4088|NULL|-1.0298700|-0.3703548	chr8	135807262	135810261	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36708_PI429285431	3.0689971	A	3.4318373	P	0.777632165476575	0	lncRNA	37889-1_{1..1498}	n345196|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_745|NULL|-1.3303300|-0.3052759	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345196|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_745|NULL|-1.3303300|-0.3052759	chr13	 89063051	 89064548	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004143	1.5610147	A	0.90687627	A	1.57367588138437	0	lncRNA	ENST00000507890	NA	NA	NA	NA	XLOC_004886	NA	ENST00000507890	NA	NA	"BROAD Institute lincRNA (XLOC_004886), lincRNA [TCONS_00009700]"	chr5:73602294-73602235	hs|5q13.3	Agilent_HUMAN_G3V2	ENST00000507890	ENST00000507890	chr5	 73602235	 73602294	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45978_PI429285431	6.6308303	P	6.9385924	P	0.807893988113908	0	lncRNA	50269-1_{1..3000}	"gi|211938459|ref|NR_024374.1| Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like (LOC642846), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|211938459|ref|NR_024374.1| Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like (LOC642846), non-coding RNA"	Chr12	  9436253	  9439252	+	642846	NR_024374.1	NA	NA	NA	NA	NA	inter
CUST_22903_PI429285431	1.6304308	A	1.4936453	A	1.09945267046157	0	lncRNA	24480-1_{1..521}	lnc-C5orf49-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C5orf49-1:1	chr5	  7749854	  7750374	-	lnc-C5orf49-1	lnc-C5orf49-1:1	ENSG00000250761.1	RP11-711G10.1	ADCY2	"hg19_refFlat_ADCY2:range=chr5:7396410-78269845'pad=0,hg19_refFlat_ADCY2:range=chr5:7396410-78269845'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60chr5:7739854-7759878"	NA	inner
CUST_51393_PI429285431	6.6086617	P	6.7272243	P	0.921104917837958	0	lncRNA	54978-3_{6001..7001}	hg19_lincRNAsTranscripts_TCONS_l2_00009670 range=chr16:31711913-31724332 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009670 range=chr16:31711913-31724332 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 31717913	 31718913	+	NA	NA	NA	NA	ZNF720	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40chr16:31724550-31734332"	NA	inter
CUST_9863_PI429285431	3.1738873	P	2.8593512	A	1.24361170444129	0	lncRNA	11386-1_{1..292}	lnc-RADIL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RADIL-2:1	chr7	  4646511	  4646802	-	lnc-RADIL-2	lnc-RADIL-2:1	XLOC_006345	linc-CARD11-1	NA	NA	NA	inter
CUST_45489_PI429285431	1.5262402	A	0.9027516	A	1.5405960164211	0	lncRNA	49901-1_{1..1166}	"gi|397139356|ref|XR_132573.2| PREDICTED: Homo sapiens uncharacterized LOC100652988 (LOC100652988), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139356|ref|XR_132573.2| PREDICTED: Homo sapiens uncharacterized LOC100652988 (LOC100652988), misc_RNA"	Chr10	  4277487	  4278652	-	100652988	XR_132573.3	NA	NA	NA	NA	NA	inter
LNCA_21_P0001571	0.9204178	A	0.9046722	A	1.01097379340784	0	lncRNA	TCONS_00001635	NA	NA	NA	NA	XLOC_000972	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000972), lincRNA [TCONS_00001635]"	chr1:116464101-116464042	hs|1p13.1	Agilent_HUMAN_G3V2	TCONS_00001635	TCONS_00001635	chr1	116464042	116464101	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23228_PI429285431	1.1099491	A	1.1367471	A	0.981596493182143	0	lncRNA	24800-1_{1..449}	lnc-ANKRA2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRA2-4:1	chr5	 72446247	 72446695	-	lnc-ANKRA2-4	lnc-ANKRA2-4:1	ENSG00000251599.1	RP11-232L2.2	NA	NA	NA	inter
CUST_19825_PI429285431	0.9198739	A	0.9093491	A	1.00732191050355	0	lncRNA	21482-1_{1..229}	lnc-HELZ-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HELZ-2:1	chr17	 65029363	 65029591	-	lnc-HELZ-2	lnc-HELZ-2:1	ENSG00000265664.1	RP11-74H8.1	CACNG4	NA	chr17:65019363-65029518	inner
CUST_44546_PI429285431	7.057728	P	5.9081693	P	2.21846024473932	0	lncRNA	49133-1_{1..3000}	"gi|402478649|ref|NR_073104.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402478649|ref|NR_073104.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 3, non-coding RNA"	Chr5	 52285156	 52288155	+	3673	NR_073104.1	NA	NA	NA	"hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.21;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70"	NA	inter
CUST_25961_PI429285431	0.90271395	A	0.9859667	A	0.943927035301839	0	lncRNA	27481-1_{1..2509}	lnc-FAM132B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM132B-1:1	chr2	239163415	239165923	+	lnc-FAM132B-1	lnc-FAM132B-1:1	ENSG00000225057.2	AC096574.4	PER2	"hg19_refFlat_PER2:range=chr2:239155016-2391865775'pad=0,hg19_refFlat_PER2:range=chr2:239155016-2391865775'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00chr2:239153415-239174274"	NA	inner
CUST_18414_PI429285431	6.49139	P	6.4291635	P	1.04407583220172	0	lncRNA	20139-1_{1..320}	lnc-AL117340.1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AL117340.1-2:4	chr10	 31607825	 31608144	-	lnc-AL117340.1-2	lnc-AL117340.1-2:4	ENSG00000237036	ZEB1-AS1	ZEB1	NA	chr10:31608101-31617861	inter
CUST_21628_PI429285431	2.007277	A	2.7382183	A	0.602510671795933	0	lncRNA	23240-1_{1..502}	lnc-GLUD1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLUD1-3:2	chr10	 88728799	 88729300	-	lnc-GLUD1-3	lnc-GLUD1-3:2	ENSG00000233165.1	RP11-96C23.8	AGAP11	NA	chr10:88730498-88738935	inner
CUST_39150_PI429285431	9.274802	P	8.753384	P	1.43536535069384	0	lncRNA	40127-1_{1..1672}	n385792|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004egm.2||4.8024900|-0.2938922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385792|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004egm.2||4.8024900|-0.2938922	chrX	100141956	100143627	-	NA	NA	NA	NA	XKRX	NA	chrX:100131956-100153628	inter
CUST_38781_PI429285431	0.90875345	A	0.9027282	A	1.00418511829928	0	lncRNA	39775-1_{1..3000}	n384430|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003gpk.1||-1.1615000|-0.3316093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384430|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003gpk.1||-1.1615000|-0.3316093	chr4	 17629878	 17632877	+	NA	NA	NA	NA	FAM184B	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40chr4:17633696-17643666"	NA	inter
CUST_46833_PI429285431	0.8997236	A	0.8937589	A	1.00414297347224	0	lncRNA	50971-1_{1..3000}	"gi|237681126|ref|NR_027676.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237681126|ref|NR_027676.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant 6, non-coding RNA"	Chr17	 41196312	 41199311	-	672	NR_027676.1	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20"	NA	inter
CUST_2366_PI429285431	3.5202317	P	3.7027926	P	0.8811375171503	0	lncRNA	2359-1_{1..683}	"transcript_id ""ENST00000513561.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513561.1"" | genecode_v17"	chr5	133249368	133250050	+	ENSG00000249073.1	ENST00000513561.1	CTD-2131I18.1	CTD-2131I18.1-001	NA	NA	NA	inter
CUST_7239_PI429285431	1.5969734	A	1.8334767	A	0.848800081564795	0	lncRNA	7842-1_{1..316}	"transcript_id ""ENST00000411107.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411107.1"" | genecode_v17"	chr6	151640770	151641085	+	ENSG00000223039.1	ENST00000411107.1	RN7SKP268	RN7SKP268-201	AKAP12	NA	chr6:151630770-151651085	inner
CUST_314_PI429201921	4.0493174	P	4.3662343	P	0.802783628147255	0	lncRNA	213-1_{1..3000}	TC16001572.hg.1	TCONS_l2_00009765-XLOC_l2_005236 // Broad TUCP // linc-GNAO1-2 chr16:+:55819980-55827371 // chr16 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr16:+:55819980-55827371	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00009765-XLOC_l2_005236	linc-GNAO1-2	chr16	 55819980	 55827371	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33181_PI429285431	0.91650647	A	0.919444	A	0.997965930890824	0	lncRNA	34773-1_{1..796}	n339871|CR596894|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2319|NULL|-0.8919810|-0.2039448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339871|CR596894|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2319|NULL|-0.8919810|-0.2039448	chr18	 46188210	 46189005	-	NA	NA	NA	NA	CTIF	NA	chr18:46178210-46199006	inner
CUST_5535_PI429285431	2.7817478	P	3.243036	P	0.726337413486016	0	lncRNA	5466-1_{1..3000}	"transcript_id ""ENST00000563424.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563424.2"" | genecode_v17"	chr16	 50679720	 50682719	+	ENSG00000261685.2	ENST00000563424.2	RP11-401P9.4	RP11-401P9.4-001	NKD1	NA	chr16:50669720-50674771	inter
CUST_50859_PI429285431	0.9163102	A	0.91194504	A	1.00303028039207	0	lncRNA	54503-1_{1..2394}	hg19_lincRNAsTranscripts_TCONS_l2_00004724 range=chr11:94380265-94386363 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004724 range=chr11:94380265-94386363 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 94380265	 94382658	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29863_PI429285431	3.2133431	P	3.3733883	P	0.894997030005719	0	lncRNA	31626-1_{1..321}	n333835|L23206|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192531|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192531|-1.2049700|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333835|L23206|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192531|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192531|-1.2049700|-1.0000000	chr13	 21278218	 21278538	-	NA	NA	NA	NA	N6AMT2	"hg19_refFlat_IL17D:range=chr13:21278141-212960935'pad=0,hg19_refFlat_IL17D:range=chr13:21278141-212960935'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.00chr13:21303073-21305884"	NA	inner
CUST_22477_PI429285431	0.90013623	A	0.8947169	A	1.00376345739777	0	lncRNA	24064-1_{1..381}	lnc-CDK13-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CDK13-2:1	chr7	 40824783	 40825163	+	lnc-CDK13-2	lnc-CDK13-2:1	ENSG00000227658.1	AC005160.3	C7orf10	NA	chr7:40814783-40834816	inner
CUST_13475_PI429285431	5.530001	P	5.687203	P	0.896762590002256	0	lncRNA	15113-1_{1..604}	lnc-RP11-327F22.5.1-7:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-327F22.5.1-7:7	chr16	 51828754	 51829357	+	lnc-RP11-327F22.5.1-7	lnc-RP11-327F22.5.1-7:7	XLOC_011722	linc-CHD9-6	NA	NA	NA	inter
CUST_13234_PI429285431	3.3403351	P	3.2534935	A	1.06204257364618	0	lncRNA	14862-1_{1..284}	lnc-FRG1-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRG1-6:2	chr4	190125797	190126080	+	lnc-FRG1-6	lnc-FRG1-6:2	XLOC_003838	linc-FRG1-6	NA	NA	NA	inter
CUST_45857_PI429285431	1.3751804	A	1.124083	A	1.19011204107579	0	lncRNA	50186-2_{3001..4068}	"gi|379030613|ref|NR_046410.1| Homo sapiens polymerase (DNA-directed), delta 3, accessory subunit (POLD3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379030613|ref|NR_046410.1| Homo sapiens polymerase (DNA-directed), delta 3, accessory subunit (POLD3), transcript variant 3, non-coding RNA"	Chr11	 74306650	 74307717	+	10714	NR_046410.1	NA	NA	NA	NA	NA	inter
CUST_34533_PI429285431	1.1423193	A	1.0921139	A	1.03541232751806	0	lncRNA	35995-1_{1..1352}	n341413|BC043573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3883|NULL|-0.8842350|-0.2356782	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341413|BC043573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3883|NULL|-0.8842350|-0.2356782	chr8	 10586823	 10588174	+	NA	NA	NA	NA	PINX1	NA	chr8:10622884-10632686	inner
CUST_43955_PI429285431	3.7567933	P	2.7379293	A	2.02632277388567	0	lncRNA	48663-2_{3001..6000}	"gi|254750700|ref|NR_027671.2| Homo sapiens UDP-glucose glycoprotein glucosyltransferase 1 (UGGT1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254750700|ref|NR_027671.2| Homo sapiens UDP-glucose glycoprotein glucosyltransferase 1 (UGGT1), transcript variant 2, non-coding RNA"	Chr2	128851782	128854781	+	56886	NR_027671.2	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30"	NA	inter
CUST_38461_PI429285431	4.103045	P	3.3403351	P	1.69667459839121	0	lncRNA	39480-1_{1..2714}	n382908|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002cqy.3||0.6467810|-0.1719672	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382908|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002cqy.3||0.6467810|-0.1719672	chr16	  2653384	  2656097	+	NA	NA	NA	NA	PDPK1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr16:2643384-2653189"	NA	inter
CUST_34503_PI429285431	4.347207	P	4.756319	P	0.753086767050933	0	lncRNA	35969-1_{1..3000}	n341380|AK125943|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3849|NULL|2.6716600|-0.1839885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341380|AK125943|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3849|NULL|2.6716600|-0.1839885	chr7	157406714	157409713	+	NA	NA	NA	NA	PTPRN2	NA	chr7:157396714-157421457	inner
CUST_11338_PI429285431	4.0015373	P	3.8438215	P	1.11551955177332	0	lncRNA	12901-1_{1..451}	lnc-CRYBA4-1:44	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:44	chr22	 27174419	 27174869	+	lnc-CRYBA4-1	lnc-CRYBA4-1:44	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
CUST_10220_PI429285431	5.3803906	P	5.6998715	P	0.801358164567858	0	lncRNA	11745-1_{1..330}	lnc-TOMM20-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TOMM20-2:7	chr1	235099514	235099843	-	lnc-TOMM20-2	lnc-TOMM20-2:7	XLOC_001265	linc-IRF2BP2-1	NA	NA	NA	inter
CUST_20636_PI429285431	7.250658	P	6.7562594	P	1.40873338993653	0	lncRNA	22275-1_{1..319}	lnc-MTHFSD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTHFSD-1:1	chr16	 86601223	 86601541	-	lnc-MTHFSD-1	lnc-MTHFSD-1:1	ENSG00000260944.1	RP11-463O9.5	FOXC2	"hg19_refFlat_FOXC1:range=chr6:1610681-16123425'pad=0,hg19_refFlat_FOXC1:range=chr6:1610681-16123425'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_FOXD1:range=chr5:72742792-727441875'pad=0,hg19_refFlat_FOXD1:range=chr5:72742792-727441875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_FOXL1:range=chr16:86612330-866133675'pad=0,hg19_refFlat_FOXL1:range=chr16:86612330-866133675'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_FOXC2:range=chr16:86600942-866024475'pad=0,hg19_refFlat_FOXC2:range=chr16:86600942-866024475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90chr16:86600857-86602539"	NA	inner
CUST_12599_PI429285431	0.9129968	A	1.1792909	A	0.831452585675056	0	lncRNA	14212-1_{1..676}	lnc-PLEKHA5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLEKHA5-2:1	chr12	 19804309	 19804984	+	lnc-PLEKHA5-2	lnc-PLEKHA5-2:1	XLOC_009682	linc-PDE3A-4	NA	NA	NA	inter
LNCA_21_P0004235	1.8435016	A	1.938215	A	0.936458261993018	0	lncRNA	TCONS_00009889	NA	NA	NA	NA	XLOC_004309	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004309), lincRNA [TCONS_00009889]"	chr5:17485664-17485723	hs|5p15.1	Agilent_HUMAN_G3V2	TCONS_00009889	TCONS_00009889	chr5	 17485664	 17485723	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42218_PI429285431	6.2037497	P	6.21123	P	0.99482846979089	0	lncRNA	44320-1_{1..149}	ENST00000408840 ncrna:miRNA chromosome:GRCh37:10:105154010:105154158:-1 gene:ENSG00000221767 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408840 ncrna:miRNA chromosome:GRCh37:10:105154010:105154158:-1 gene:ENSG00000221767 gene_biotype:miRNA transcript_biotype:miRNA	chr10	105154010	105154158	-	ENSG00000221767	ENST00000408840	NA	NA	USMG5	NA	chr10:105148807-105156270	inner
CUST_29395_PI429285431	2.5748239	A	2.5963793	A	0.985169999146309	0	lncRNA	31149-1_{1..709}	n332739|AF016693|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062404|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062404|2.2948300|-0.1207372	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332739|AF016693|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062404|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062404|2.2948300|-0.1207372	chr7	100678735	100679443	+	NA	NA	NA	NA	MUC17	NA	chr7:100668735-100689444	inner
LNCA_21_P0003597	0.92899406	A	0.96197534	A	0.977398448772452	0	lncRNA	XR_112629	XR_112629	XR_112629	NA	Hs.397553	LOC100508631	uncharacterized LOC100508631	NA	THC2608522	NA	"PREDICTED: Homo sapiens hypothetical LOC100508631 (LOC100508631), miscRNA [XR_112629]"	chr4:37020559-37020617	hs|4p14	Agilent_HUMAN_G3V2	XR_112629	XR_112629	chr4	 37020559	 37020617	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30455_PI429285431	2.0367107	A	1.7302735	A	1.23664996342882	0	lncRNA	32235-1_{1..759}	n335596|CR595830|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000275025|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000275025|-0.6127610|-0.0915964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335596|CR595830|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000275025|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000275025|-0.6127610|-0.0915964	chr2	 65296704	 65297462	-	NA	NA	NA	NA	CEP68	"hg19_refFlat_CEP68:range=chr2:65296579-653098395'pad=0,hg19_refFlat_CEP68:range=chr2:65296579-653098395'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.30chr2:65286704-65309116"	NA	inner
CUST_17484_PI429285431	0.92591166	A	0.9081611	A	1.0123797531425	0	lncRNA	19211-1_{1..636}	lnc-PSMA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PSMA2-1:1	chr7	 43084146	 43084781	-	lnc-PSMA2-1	lnc-PSMA2-1:1	XLOC_006422	linc-PSMA2	NA	NA	NA	inter
CUST_23885_PI429285431	4.052537	P	4.693985	P	0.641069199291146	0	lncRNA	25443-1_{1..449}	lnc-SPAG1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPAG1-4:1	chr8	101632041	101632489	+	lnc-SPAG1-4	lnc-SPAG1-4:1	ENSG00000253740.1	KB-1083B1.1	SNX31	NA	chr8:101622041-101642221	inner
CUST_47419_PI429285431	10.731568	P	10.872055	P	0.907212862421158	0	lncRNA	51459-1_{1..3000}	"gi|165905586|ref|NR_004858.1| Homo sapiens protein O-fucosyltransferase 2 (POFUT2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|165905586|ref|NR_004858.1| Homo sapiens protein O-fucosyltransferase 2 (POFUT2), transcript variant 2, non-coding RNA"	Chr21	 46683843	 46686842	-	23275	NR_004858.1	NA	NA	NA	NA	NA	inter
CUST_29946_PI429285431	4.618422	P	4.6457396	P	0.981243025756905	0	lncRNA	31710-1_{1..285}	n334137|M73463|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196262|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196262|1.0122400|-0.1312222	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334137|M73463|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196262|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196262|1.0122400|-0.1312222	NA	NA	      284	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29691_PI429285431	2.835183	A	2.839997	A	0.996668750438016	0	lncRNA	31453-1_{1..562}	n333352|AY258331|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085635|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085635|-1.3369600|-0.2455106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333352|AY258331|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085635|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085635|-1.3369600|-0.2455106	chr22	 46567231	 46567792	+	NA	NA	NA	NA	PPARA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30chr22:46557231-46604307"	NA	inner
CUST_37995_PI429285431	4.457518	P	4.273283	P	1.1362143271969	0	lncRNA	39082-1_{1..2892}	n346551|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2101|NULL|-1.4929800|-0.2232839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n346551|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2101|NULL|-1.4929800|-0.2232839	chr2	 89109724	 89112615	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28532_PI429285431	0.8949497	A	1.3893735	A	0.709845127535919	0	lncRNA	30203-1_{1..244}	n325880|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050576|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050576|-1.0731100|-0.4245423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325880|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050576|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050576|-1.0731100|-0.4245423	chr10	119484813	119485056	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50983_PI429285431	0.9151063	A	0.91595674	A	0.999410693621017	0	lncRNA	54626-1_{1..613}	hg19_lincRNAsTranscripts_TCONS_l2_00005931 range=chr12:120377247-120413171 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005931 range=chr12:120377247-120413171 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	120377247	120377859	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50058_PI429285431	2.0124843	A	1.9015687	A	1.07991338130041	0	lncRNA	53793-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00027780 range=chr8:58121382-58153517 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027780 range=chr8:58121382-58153517 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 58121382	 58124381	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13804_PI429285431	1.9291704	A	0.90814984	A	2.02935401349491	0	lncRNA	15446-1_{1..313}	lnc-GDAP2-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GDAP2-1:9	chr1	118147411	118147723	-	lnc-GDAP2-1	lnc-GDAP2-1:9	XLOC_000980	linc-VTCN1-2	FAM46C	NA	chr1:118148604-118157593	inter
CUST_10749_PI429285431	0.9171394	A	0.9099324	A	1.00500801010227	0	lncRNA	12285-1_{1..896}	lnc-BHLHE23-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-BHLHE23-2:1	chr20	 61733467	 61734362	-	lnc-BHLHE23-2	lnc-BHLHE23-2:1	XLOC_013841	linc-BHLHE23-3	NA	NA	NA	inter
CUST_23434_PI429285431	4.687349	P	4.619048	P	1.0484812049877	0	lncRNA	25002-1_{1..602}	lnc-CLEC16A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLEC16A-2:1	chr16	 11317958	 11318559	+	lnc-CLEC16A-2	lnc-CLEC16A-2:1	ENSG00000263033.1	RP11-396B14.2	NA	NA	NA	inter
CUST_44047_PI429285431	6.537103	P	6.1398897	P	1.31696161819415	0	lncRNA	48724-1_{1..3000}	"gi|401709976|ref|NR_073108.1| Homo sapiens Kruppel-like factor 7 (ubiquitous) (KLF7), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|401709976|ref|NR_073108.1| Homo sapiens Kruppel-like factor 7 (ubiquitous) (KLF7), transcript variant 5, non-coding RNA"	Chr2	207938861	207941860	-	8609	NR_073108.1	NA	NA	NA	NA	NA	inter
CUST_2988_PI429285431	0.9236345	A	0.9111854	A	1.00866639621034	0	lncRNA	2967-1_{1..579}	"transcript_id ""ENST00000524073.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524073.1"" | genecode_v17"	chr8	  8417404	  8417982	+	ENSG00000253774.1	ENST00000524073.1	CTD-3023L14.1	CTD-3023L14.1-001	NA	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.50"	NA	inter
CUST_51093_PI429285431	1.1936314	A	1.162492	A	1.02181881089783	0	lncRNA	54731-1_{1..1963}	hg19_lincRNAsTranscripts_TCONS_l2_00006889 range=chr13:64312310-64325174 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006889 range=chr13:64312310-64325174 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 64312310	 64314272	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37263_PI429285431	1.820018	A	0.92911255	A	1.8543395609145	0	lncRNA	38370-1_{1..540}	n345701|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1250|NULL|-1.2891500|-0.4690203	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345701|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1250|NULL|-1.2891500|-0.4690203	chr13	 50601279	 50601818	-	NA	NA	NA	NA	KCNRG	NA	chr13:50591279-50595058	inter
LNCA_21_P0011993	2.1862223	A	0.9380727	A	2.37536563248401	0	lncRNA	ENST00000425850	NA	NA	NA	NA	XLOC_l2_007167	NA	ENST00000425850	THC2784684	NA	"BROAD Institute lincRNA (XLOC_l2_007167), lincRNA [TCONS_l2_00015218]"	chr2:742881-747685	hs|2p25.3	Agilent_HUMAN_G3V2	ENST00000425850	ENST00000425850	chr2	   742881	   747685	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24704_PI429285431	4.9668813	P	5.46277	P	0.709124722773925	0	lncRNA	26250-1_{1..544}	lnc-RBM6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBM6-1:1	chr3	 49940864	 49941407	+	lnc-RBM6-1	lnc-RBM6-1:1	ENSG00000230698.1	CTD-2330K9.2	MST1R	"hg19_refFlat_MST1R:range=chr3:49924740-499410425'pad=0,hg19_refFlat_MST1R:range=chr3:49924740-499410425'pad=0 3'pad=0 strand=- repeatMasking=none,-106.70chr3:49930864-49941306"	NA	inner
CUST_9086_PI429285431	0.9263377	A	0.91550946	A	1.00753380137363	0	lncRNA	10607-1_{1..2176}	lnc-JAM2-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-JAM2-6:4	chr21	 25918309	 25920484	+	lnc-JAM2-6	lnc-JAM2-6:4	ENSG00000237484	AP000476.1	NA	NA	NA	inter
CUST_43655_PI429285431	0.99165785	A	0.98791033	A	1.00260095956368	0	lncRNA	48411-1_{1..1390}	"gi|148806882|ref|NR_002925.2| Homo sapiens flavin containing monooxygenase 9 pseudogene (FMO9P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|148806882|ref|NR_002925.2| Homo sapiens flavin containing monooxygenase 9 pseudogene (FMO9P), non-coding RNA"	NA	NA	NA	NA	NA	NR_002925.2	NA	NA	NA	NA	NA	Unknown
CUST_43605_PI429285431	7.176344	P	7.161717	P	1.01019023419957	0	lncRNA	48368-1_{1..2045}	"gi|344313188|ref|NR_045034.1| Homo sapiens anterior pharynx defective 1 homolog A (C. elegans) (APH1A), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|344313188|ref|NR_045034.1| Homo sapiens anterior pharynx defective 1 homolog A (C. elegans) (APH1A), transcript variant 6, non-coding RNA"	NW_003871055.3	  7080812	  7082856	-	51107	NR_045034.1	NA	NA	NA	NA	NA	Unknown
CUST_30788_PI429285431	1.9272405	A	1.6560099	A	1.20683680478591	0	lncRNA	32575-1_{1..321}	n336663|Z68974|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327611|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327611|2.5600900|-0.0817905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336663|Z68974|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327611|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327611|2.5600900|-0.0817905	chr2	 89160396	 89160716	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16729_PI429285431	0.9719322	A	0.925963	A	1.03237649511118	0	lncRNA	18436-1_{1..429}	lnc-KLF5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF5-2:1	chr13	 74735529	 74735957	+	lnc-KLF5-2	lnc-KLF5-2:1	XLOC_010427	linc-UCHL3-6	NA	NA	NA	inter
LNCA_19_P00803209	1.0199074	A	0.94864875	A	1.05063288723671	0	lncRNA	AK056484	NA	AK056484	NA	Hs.587432	LOC441204	uncharacterized LOC441204	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013314), lincRNA [TCONS_l2_00025735]"	chr7:26537355-26537414	hs|7p15.2	Agilent_HUMAN_G3V2	AK056484	AK056484	chr7	 26537355	 26537414	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4163_PI429285431	2.631804	A	1.6987511	A	1.909312036668	0	lncRNA	4120-2_{3001..3956}	"transcript_id ""ENST00000420905.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420905.1"" | genecode_v17"	chr12	 10103736	 10104691	-	ENSG00000231560.1	ENST00000420905.1	AC091814.3	AC091814.3-001	CLEC12A	NA	chr12:10103915-10115935	inner
CUST_30234_PI429285431	5.435458	P	5.4524627	P	0.988282431877136	0	lncRNA	32009-1_{1..495}	n335102|AL110291|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250265|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250265|1.8421800|-0.1774335	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335102|AL110291|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250265|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250265|1.8421800|-0.1774335	chr15	 89631706	 89632200	+	NA	NA	NA	NA	ABHD2	NA	chr15:89631381-89705017	inner
CUST_40845_PI429285431	0.914924	A	0.9131746	A	1.00121332716421	0	lncRNA	41548-1_{1..2728}	n410617|NR_037861_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037861_2||-1.1457700|-0.3053827	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410617|NR_037861_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037861_2||-1.1457700|-0.3053827	chr6	  3382788	  3385515	+	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-31.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50chr6:3372788-3407082"	NA	inner
CUST_15744_PI429285431	3.36208	P	4.041653	P	0.624350038388985	0	lncRNA	17431-1_{1..479}	lnc-PCDH8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH8-1:1	chr13	 53508234	 53508712	-	lnc-PCDH8-1	lnc-PCDH8-1:1	XLOC_010623	linc-PCDH8-6	NA	NA	NA	inter
CUST_32099_PI429285431	5.1376343	P	4.518595	P	1.53585210679447	0	lncRNA	33803-2_{3001..3208}	n338661|BC051708|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1075|NULL|-1.0126100|-0.3234062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338661|BC051708|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1075|NULL|-1.0126100|-0.3234062	chr2	 10095865	 10096072	-	NA	NA	NA	NA	GRHL1	"hg19_refFlat_GRHL1:range=chr2:10091963-101408355'pad=0,hg19_refFlat_GRHL1:range=chr2:10091963-101408355'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50chr2:10091792-10106058"	NA	inner
CUST_14822_PI429285431	5.9033957	P	5.9950094	P	0.938472450830618	0	lncRNA	16482-1_{1..434}	lnc-FOXA2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXA2-4:2	chr20	 22665754	 22666187	-	lnc-FOXA2-4	lnc-FOXA2-4:2	XLOC_013686	linc-FOXA2-3	NA	NA	NA	inter
CUST_18209_PI429285431	5.5706863	P	5.8384223	P	0.830622006416473	0	lncRNA	19944-1_{1..490}	lnc-RP11-706O15.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-706O15.1.1-1:2	chrX	  3784895	  3785384	-	lnc-RP11-706O15.1.1-1	lnc-RP11-706O15.1.1-1:2	ENSG00000234449	RP11-706O15.3	NA	NA	NA	inter
CUST_27490_PI429285431	3.5814352	P	4.1174684	P	0.689664589833924	0	lncRNA	29061-1_{1..1778}	n324667|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331463|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331463|0.7548950|-0.1935469	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324667|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331463|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331463|0.7548950|-0.1935469	chr22	 38018938	 38020715	+	NA	NA	NA	NA	GGA1	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80chr22:38008938-38029571"	NA	inner
CUST_17921_PI429285431	13.397873	P	13.071029	P	1.25426657213935	0	lncRNA	19653-1_{1..294}	lnc-TTC7B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC7B-2:1	chr14	 90983329	 90983622	-	lnc-TTC7B-2	lnc-TTC7B-2:1	XLOC_011103	linc-C14orf102-1	NA	NA	NA	inter
LNCA_21_P0005060	4.0764923	P	4.204961	P	0.914801920751142	0	lncRNA	TCONS_00012278	NA	NA	NA	NA	XLOC_005834	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005834), lincRNA [TCONS_00012278]"	chr6:133134542-133134483	hs|6q23.2	Agilent_HUMAN_G3V2	TCONS_00012278	TCONS_00012278	chr6	133134483	133134542	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17021_PI429285431	7.1102467	P	7.1792417	P	0.953301849174878	0	lncRNA	18732-1_{1..1158}	lnc-CTDSP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTDSP2-2:1	chr12	 58329622	 58330779	-	lnc-CTDSP2-2	lnc-CTDSP2-2:1	XLOC_010102	linc-CTDSP2-1	XRCC6BP1	NA	chr12:58335445-58340391	inter
CUST_6109_PI429285431	1.6616498	A	0.94559896	A	1.64267928784958	0	lncRNA	6035-1_{1..349}	"transcript_id ""ENST00000584028.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584028.1"" | genecode_v17"	chr18	 19605985	 19606333	+	ENSG00000265758.1	ENST00000584028.1	RP11-595B24.1	RP11-595B24.1-003	NA	NA	NA	inter
CUST_6530_PI429285431	1.231488	M	0.9199299	A	1.24104729835639	0	lncRNA	6473-1_{1..500}	"transcript_id ""ENST00000419624.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419624.1"" | genecode_v17"	chr19	 43657431	 43657930	+	ENSG00000227606.2	ENST00000419624.1	AC005392.13	AC005392.13-001	PSG5	NA	chr19:43671895-43675014	inter
CUST_5201_PI429285431	5.785903	P	5.685971	P	1.07172294674755	0	lncRNA	5142-1_{1..564}	"transcript_id ""ENST00000565136.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565136.1"" | genecode_v17"	chr15	 62522583	 62523146	-	ENSG00000259878.1	ENST00000565136.1	RP11-1O10.1	RP11-1O10.1-001	NA	NA	NA	inter
CUST_21545_PI429285431	0.91056633	A	0.91013896	A	1.00029627419109	0	lncRNA	23162-1_{1..317}	lnc-KLF9-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLF9-1:5	chr9	 72772428	 72772744	-	lnc-KLF9-1	lnc-KLF9-1:5	ENSG00000204706.6	RP11-195E11.3	MAMDC2	NA	chr9:72762428-72782456	inner
CUST_34652_PI429285431	0.9424964	A	0.9196856	A	1.01593690079031	0	lncRNA	36104-1_{1..2137}	n341550|AK093022|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4021|NULL|0.0435791|-0.3236567	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341550|AK093022|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4021|NULL|0.0435791|-0.3236567	chr8	 82608602	 82610738	-	NA	NA	NA	NA	ZFAND1	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr8:82613566-82620929"	NA	inter
CUST_47507_PI429285431	2.0794575	A	2.879073	A	0.574502270621689	0	lncRNA	51519-1_{1..1950}	"gi|397139771|ref|XR_158963.1| PREDICTED: Homo sapiens uncharacterized protein FLJ20464 (FLJ20464), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139771|ref|XR_158963.1| PREDICTED: Homo sapiens uncharacterized protein FLJ20464 (FLJ20464), misc_RNA"	Chr22	 31742745	 31744694	+	54944	XR_158963.2	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.26;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30"	NA	inter
CUST_8078_PI429285431	9.547298	P	9.387471	P	1.11715316721858	0	lncRNA	9684-1_{1..2300}	lnc-WDR5-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR5-3:3	chr9	136890967	136893266	+	lnc-WDR5-3	lnc-WDR5-3:3	ENSG00000235106	NCRNA00094	BRD3	NA	chr9:136895427-136903224	inter
CUST_51797_PI429285431	5.785533	P	5.8527484	P	0.954478496136225	0	lncRNA	55345-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00012909 range=chr19:19852148-19863638 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012909 range=chr19:19852148-19863638 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 19855148	 19858147	-	NA	NA	NA	NA	ZNF14	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.81;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40chr19:19842148-19843921"	NA	inter
CUST_36209_PI429285431	5.207266	P	5.324829	P	0.921743344878152	0	lncRNA	37465-1_{1..2410}	n344754|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_303|NULL|-1.5391900|-0.3514826	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344754|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_303|NULL|-1.5391900|-0.3514826	chrX	 13284165	 13286574	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44256_PI429285431	5.148343	P	5.6867805	P	0.68851619769053	0	lncRNA	48900-1_{1..659}	"gi|397139048|ref|XR_158774.1| PREDICTED: Homo sapiens uncharacterized LOC100507291 (LOC100507291), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139048|ref|XR_158774.1| PREDICTED: Homo sapiens uncharacterized LOC100507291 (LOC100507291), misc_RNA"	NA	NA	NA	NA	NA	XR_158774.1	NA	NA	NA	NA	NA	Unknown
CUST_20657_PI429285431	0.9081985	A	1.3912044	A	0.715485333979285	0	lncRNA	22296-1_{1..566}	lnc-PPIAL4C-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPIAL4C-4:1	chr1	149245050	149245615	+	lnc-PPIAL4C-4	lnc-PPIAL4C-4:1	ENSG00000223779.4	RP11-403I13.4	NA	NA	NA	inter
CUST_33126_PI429285431	2.3993447	A	2.8563309	A	0.728506525394646	0	lncRNA	34723-1_{1..1008}	n339816|AK129535|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2263|NULL|1.1860000|-0.3450283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339816|AK129535|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2263|NULL|1.1860000|-0.3450283	chr4	  4567589	  4568596	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43135_PI429285431	2.1963007	A	0.9988451	A	2.29334849164843	0	lncRNA	47949-1_{1..707}	ENST00000577150 havana:lincRNA chromosome:GRCh37:HSCHR5_1_CTG1:69057393:69058099:-1 gene:ENSG00000262989 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577150 havana:lincRNA chromosome:GRCh37:HSCHR5_1_CTG1:69057393:69058099:-1 gene:ENSG00000262989 gene_biotype:lincRNA transcript_biotype:lincRNA	chrHSCHR5_1_CTG1	 69057393	 69058099	-	ENSG00000262989	ENST00000577150	NA	NA	NA	NA	NA	Unknown
CUST_3149_PI429285431	1.2507906	A	1.6774943	A	0.743959659597991	0	lncRNA	3128-1_{1..432}	"transcript_id ""ENST00000519819.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519819.1"" | genecode_v17"	chr8	 64298167	 64298598	-	ENSG00000253205.1	ENST00000519819.1	CTD-3046C4.1	CTD-3046C4.1-006	NA	NA	NA	inter
CUST_21605_PI429285431	1.9588201	A	1.4176348	A	1.45516757360666	0	lncRNA	23218-1_{1..2929}	lnc-RPGRIP1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RPGRIP1L-1:1	chr16	 53524952	 53527880	-	lnc-RPGRIP1L-1	lnc-RPGRIP1L-1:1	ENSG00000262557.1	RP11-44F14.11	RBL2	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_GABRG2:range=chr5:161495006-1615803745'pad=0,hg19_refFlat_GABRG2:range=chr5:161495006-1615803745'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00chr16:53514952-53525560"	NA	inner
CUST_17565_PI429285431	0.9233662	A	0.9100131	A	1.00929862972888	0	lncRNA	19294-1_{1..339}	lnc-PENK-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PENK-1:3	chr8	 57449578	 57449916	-	lnc-PENK-1	lnc-PENK-1:3	XLOC_007088	linc-PENK-2	NA	NA	NA	inter
CUST_46535_PI429285431	14.009175	P	13.688924	P	1.24854775227247	0	lncRNA	50724-1_{1..3000}	"gi|345842457|ref|NR_033787.2| Homo sapiens DNM1 pseudogene 41 (DNM1P41), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|345842457|ref|NR_033787.2| Homo sapiens DNM1 pseudogene 41 (DNM1P41), non-coding RNA"	Chr15	 84835299	 84838298	-	440299	NR_033787.2	NA	NA	NA	NA	NA	inter
CUST_13986_PI429285431	8.1173115	P	8.0282345	P	1.06368944296525	0	lncRNA	15631-1_{1..971}	lnc-RRP1B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RRP1B-2:1	chr21	 44886938	 44887908	+	lnc-RRP1B-2	lnc-RRP1B-2:1	XLOC_013965	linc-RRP1B-1	NA	NA	NA	inter
CUST_10923_PI429285431	3.675253	P	3.8302493	P	0.898134676277199	0	lncRNA	12464-1_{1..877}	lnc-GBE1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GBE1-5:3	chr3	 80818910	 80819786	-	lnc-GBE1-5	lnc-GBE1-5:3	XLOC_003167	linc-ROBO1-3	NA	NA	NA	inter
CUST_41213_PI429285431	5.9212756	P	6.072528	P	0.900468428801208	0	lncRNA	42098-1_{1..82}	ENST00000582134 ncrna:miRNA chromosome:GRCh37:14:65511406:65511487:1 gene:ENSG00000266531 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582134 ncrna:miRNA chromosome:GRCh37:14:65511406:65511487:1 gene:ENSG00000266531 gene_biotype:miRNA transcript_biotype:miRNA	chr14	 65511406	 65511487	+	ENSG00000266531	ENST00000582134	NA	NA	CHURC1-FNTB	NA	chr14:65501406-65521487	inner
CUST_50165_PI429285431	7.2092876	P	6.9729047	P	1.17803540583825	0	lncRNA	53891-1_{1..376}	hg19_lincRNAsTranscripts_TCONS_l2_00028630 range=chr9:14993324-15017544 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028630 range=chr9:14993324-15017544 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 14993324	 14993699	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45020_PI429285431	5.870574	P	6.7853384	P	0.530430485814387	0	lncRNA	49521-2_{3001..3562}	"gi|253970400|ref|NR_028039.1| Homo sapiens GATS, stromal antigen 3 opposite strand (GATS), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|253970400|ref|NR_028039.1| Homo sapiens GATS, stromal antigen 3 opposite strand (GATS), transcript variant 3, non-coding RNA"	Chr7	 99801276	 99801837	-	352954	NR_028039.1	NA	NA	NA	"hg19_refFlat_STAG3:range=chr7:99778180-998116385'pad=0,hg19_refFlat_STAG3:range=chr7:99778180-998116385'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.60"	NA	inter
CUST_47506_PI429285431	0.9396847	A	0.94350725	A	0.997353917309774	0	lncRNA	51518-1_{1..1165}	"gi|310124117|ref|XR_109708.1| PREDICTED: Homo sapiens uncharacterized protein MGC15705 (MGC15705), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124117|ref|XR_109708.1| PREDICTED: Homo sapiens uncharacterized protein MGC15705 (MGC15705), misc_RNA"	NA	NA	NA	NA	NA	XR_109708.1	NA	NA	NA	NA	NA	Unknown
CUST_27057_PI429285431	0.9170282	A	0.9015693	A	1.01077290730206	0	lncRNA	28591-1_{1..574}	n324168|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055438|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055438|-0.9362100|-0.4518891	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324168|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055438|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055438|-0.9362100|-0.4518891	chr9	    91001	    91574	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38387_PI429285431	0.92826235	A	1.6182616	A	0.619854172207038	0	lncRNA	39425-1_{1..2071}	n382293|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ysv.2||1.9370500|-0.2075399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382293|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ysv.2||1.9370500|-0.2075399	chr14	106576815	106578885	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2703_PI429285431	3.021326	P	3.0908384	P	0.952960023683527	0	lncRNA	2689-1_{1..3000}	"transcript_id ""ENST00000605741.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605741.1"" | genecode_v17"	chr6	165241239	165244238	+	ENSG00000227455.2	ENST00000605741.1	RP11-300M24.1	RP11-300M24.1-002	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
CUST_23667_PI429285431	0.9040936	A	1.0637729	A	0.895224050225231	0	lncRNA	25232-1_{1..1298}	lnc-KIAA1257-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-KIAA1257-1:1	chr3	128590164	128591461	-	lnc-KIAA1257-1	lnc-KIAA1257-1:1	ENSG00000231305.3	RP11-723O4.2	ACAD9	"hg19_refFlat_CIDEC:range=chr3:9908818-99204765'pad=0,hg19_refFlat_CIDEC:range=chr3:9908818-99204765'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CIDEC:range=chr3:9908818-99201705'pad=0,hg19_refFlat_CIDEC:range=chr3:9908818-99201705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80chr3:128598333-128600383"	NA	inter
CUST_36006_PI429285431	1.6885849	A	1.7873704	A	0.933818774835461	0	lncRNA	37341-1_{1..3000}	n344618|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_166|NULL|-1.3732500|-0.2138910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344618|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_166|NULL|-1.3732500|-0.2138910	chr19	 52192593	 52195592	+	NA	NA	NA	NA	HAS1	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30chr19:52216365-52225296"	NA	inter
CUST_34876_PI429285431	1.1562437	A	2.0694742	A	0.530994749213265	0	lncRNA	36302-1_{1..3000}	n341790|AB040935|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4267|NULL|9.7232500|-0.1119601	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341790|AB040935|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4267|NULL|9.7232500|-0.1119601	chr9	131174044	131177043	+	NA	NA	NA	NA	ODF2	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60chr9:131206867-131208079"	NA	inner
CUST_23990_PI429285431	4.1833224	P	4.5940742	P	0.752231277777663	0	lncRNA	25545-1_{1..316}	lnc-SPAG1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPAG1-4:2	chr8	101632041	101632356	+	lnc-SPAG1-4	lnc-SPAG1-4:2	ENSG00000253740.1	KB-1083B1.1	SNX31	NA	chr8:101622041-101642208	inner
CUST_49014_PI429285431	0.91553575	A	0.9186309	A	0.99785690521797	0	lncRNA	52842-1_{1..1878}	hg19_lincRNAsTranscripts_TCONS_l2_00021841 range=chr4:21950649-22331953 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021841 range=chr4:21950649-22331953 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 21950649	 21952526	-	NA	NA	NA	NA	KCNIP4	NA	chr4:21940649-21950374	inter
CUST_25318_PI429285431	4.5488462	P	4.8895073	P	0.789679366582965	0	lncRNA	26848-1_{1..234}	lnc-IFT46-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IFT46-1:1	chr11	118401706	118401939	-	lnc-IFT46-1	lnc-IFT46-1:1	ENSG00000255435.2	RP11-770J1.3	MLL	"hg19_refFlat_MLL:range=chr11:118307228-1183928875'pad=0,hg19_refFlat_MLL:range=chr11:118307228-1183928875'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80chr11:118391706-118397539"	NA	inner
CUST_43168_PI429285431	0.90810865	A	1.2075996	A	0.812539047399048	0	lncRNA	47982-1_{1..191}	ENST00000584365 havana:sense_intronic chromosome:GRCh37:17:19053592:19054599:1 gene:ENSG00000266664 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584365 havana:sense_intronic chromosome:GRCh37:17:19053592:19054599:1 gene:ENSG00000266664 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr17	 19053592	 19053782	+	ENSG00000266664	ENST00000584365	NA	NA	GRAPL	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80chr17:19043592-19062148"	NA	inner
CUST_24782_PI429285431	0.92121613	A	0.90945596	A	1.00818484284725	0	lncRNA	26325-1_{1..521}	lnc-HMGB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMGB2-1:1	chr4	174250771	174251291	-	lnc-HMGB2-1	lnc-HMGB2-1:1	ENSG00000248774.1	RP11-798M19.3	GALNT7	NA	chr4:174240771-174245118	inter
CUST_18326_PI429285431	0.91717184	A	1.8526489	A	0.522869542574142	0	lncRNA	20055-1_{1..702}	lnc-ATP13A4-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP13A4-3:2	chr3	193561441	193562142	-	lnc-ATP13A4-3	lnc-ATP13A4-3:2	ENSG00000229155	RP11-528A4.2	NA	NA	NA	inter
CUST_12584_PI429285431	0.92115486	A	0.91325676	A	1.00548955845577	0	lncRNA	14193-1_{1..671}	lnc-KHDRBS3-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KHDRBS3-9:1	chr8	137767960	137768630	+	lnc-KHDRBS3-9	lnc-KHDRBS3-9:1	XLOC_006938	linc-CHRAC1-3	NA	NA	NA	inter
CUST_49583_PI429285431	2.2045598	A	2.8942811	A	0.619973604976902	0	lncRNA	53373-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00024456 range=chr6:143268774-143279584 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024456 range=chr6:143268774-143279584 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	143268774	143271773	+	NA	NA	NA	NA	HIVEP2	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-27.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50chr6:143258774-143266338"	NA	inter
CUST_14309_PI429285431	3.0965343	A	2.8863344	A	1.15684846586455	0	lncRNA	15968-1_{1..514}	lnc-CLCNKB-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLCNKB-3:1	chr1	 16510278	 16510791	+	lnc-CLCNKB-3	lnc-CLCNKB-3:1	XLOC_000061	linc-C1orf144-2	NA	NA	NA	inter
CUST_35139_PI429285431	2.7001963	A	2.770955	A	0.952137146225746	0	lncRNA	36541-1_{1..1833}	n342109|CR590599|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4591|NULL|-1.0248300|-0.3453577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342109|CR590599|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4591|NULL|-1.0248300|-0.3453577	chr6	112606856	112608688	-	NA	NA	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30"	NA	inter
CUST_15459_PI429285431	0.9196667	A	0.905886	A	1.00959781981793	0	lncRNA	17147-1_{1..1806}	lnc-SDHC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SDHC-1:1	chr1	161341093	161342898	+	lnc-SDHC-1	lnc-SDHC-1:1	XLOC_000441	linc-FCGR2A	SDHC	"hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.36;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80chr1:161331093-161334541"	NA	inter
CUST_7287_PI429285431	1.3113444	A	0.925482	A	1.30664062441903	0	lncRNA	8229-1_{1..315}	"transcript_id ""ENST00000411337.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411337.1"" | genecode_v17"	chr11	 98990906	 98991220	+	ENSG00000223269.1	ENST00000411337.1	RN7SKP53	RN7SKP53-201	CNTN5	NA	chr11:98980906-99001220	inner
CUST_46016_PI429285431	6.621192	P	4.993491	P	3.09020168480971	0	lncRNA	50299-2_{3001..4417}	"gi|332205984|ref|NR_038177.1| Homo sapiens caprin family member 2 (CAPRIN2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|332205984|ref|NR_038177.1| Homo sapiens caprin family member 2 (CAPRIN2), transcript variant 5, non-coding RNA"	Chr12	 30865486	 30866902	-	65981	NR_038177.1	NA	NA	NA	NA	NA	inter
CUST_22288_PI429285431	6.1685777	P	5.9875145	P	1.13371907641087	0	lncRNA	23888-1_{1..391}	lnc-ROM1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ROM1-2:1	chr11	 62314853	 62315243	+	lnc-ROM1-2	lnc-ROM1-2:1	ENSG00000257058.1	RP11-864I4.4	AHNAK	NA	chr11:62304853-62314332	inter
CUST_50062_PI429285431	1.2702597	A	1.2539179	A	1.01139166906326	0	lncRNA	53795-1_{1..1586}	hg19_lincRNAsTranscripts_TCONS_l2_00027783 range=chr8:58131226-58142445 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027783 range=chr8:58131226-58142445 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 58131226	 58132811	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4140_PI429285431	2.451737	A	1.8306379	A	1.53804647741638	0	lncRNA	4099-1_{1..449}	"transcript_id ""ENST00000542988.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000542988.1"" | genecode_v17"	chr12	  4915708	  4916156	-	ENSG00000256988.1	ENST00000542988.1	RP11-234B24.4	RP11-234B24.4-001	KCNA6	NA	chr12:4918342-4927807	inter
CUST_39948_PI429285431	5.158058	P	5.474981	P	0.802780233826459	0	lncRNA	40822-1_{1..1183}	n406933|NR_024427|lncRNA|Homosapiens||RefGeneNoncode|NR_024427||1.1799400|-0.1464634	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406933|NR_024427|lncRNA|Homosapiens||RefGeneNoncode|NR_024427||1.1799400|-0.1464634	chr22	 44568835	 44570017	+	NA	NA	NA	NA	PARVB	NA	chr22:44558835-44565106	inner
CUST_29132_PI429285431	7.424049	P	7.424049	P	1	0	lncRNA	30871-1_{1..596}	n326636|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000012052|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000012052|-1.0750200|-0.1511864	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326636|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000012052|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000012052|-1.0750200|-0.1511864	chr1	 37500926	 37501521	-	NA	NA	NA	NA	GRIK3	NA	chr1:37490926-37499844	inter
CUST_34141_PI429285431	0.9112555	A	1.2412544	A	0.795537090321408	0	lncRNA	35660-2_{3001..3405}	n340980|AL833334|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3446|NULL|0.3614670|-0.1909833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340980|AL833334|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3446|NULL|0.3614670|-0.1909833	chr11	 16801845	 16802249	-	NA	NA	NA	NA	PLEKHA7	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50chr11:16809207-16812232"	NA	inter
CUST_10793_PI429285431	0.9156743	A	0.92271435	A	0.995132096027715	0	lncRNA	12330-1_{1..601}	lnc-GAP43-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GAP43-1:1	chr3	115156966	115157566	+	lnc-GAP43-1	lnc-GAP43-1:1	XLOC_002766	linc-GAP43-1	NA	NA	NA	inter
CUST_43511_PI429285431	3.5683162	P	3.734923	P	0.890935688006946	0	lncRNA	48298-2_{3001..3229}	"gi|224177486|ref|NR_026986.1| Homo sapiens uncharacterized LOC339524 (LOC339524), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224177486|ref|NR_026986.1| Homo sapiens uncharacterized LOC339524 (LOC339524), transcript variant 2, non-coding RNA"	Chr1	 87600609	 87600837	+	339524	NR_026986.1	NA	NA	NA	NA	NA	inter
CUST_17654_PI429285431	0.8949925	A	1.1625801	A	0.830707451116944	0	lncRNA	19383-1_{1..614}	lnc-RP11-45H22.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-45H22.3.1-1:1	chr5	 53998995	 53999608	-	lnc-RP11-45H22.3.1-1	lnc-RP11-45H22.3.1-1:1	XLOC_004822	linc-ARL15	NA	"hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.40;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-23.40;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50"	NA	inter
CUST_46851_PI429285431	3.405486	P	3.8802855	P	0.71956678557733	0	lncRNA	50984-1_{1..3000}	"gi|239787874|ref|NR_027774.1| Homo sapiens pleckstrin homology domain containing, family M (with RUN domain) member 1 (PLEKHM1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239787874|ref|NR_027774.1| Homo sapiens pleckstrin homology domain containing, family M (with RUN domain) member 1 (PLEKHM1), transcript variant 2, non-coding RNA"	Chr17	 43513266	 43516265	-	9842	NR_027774.1	NA	NA	NA	NA	NA	inter
CUST_34566_PI429285431	0.9300281	A	0.9478245	A	0.987740246220899	0	lncRNA	36026-1_{1..1635}	n341448|BC037976|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3918|NULL|-0.7488110|-0.2126376	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341448|BC037976|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3918|NULL|-0.7488110|-0.2126376	chr13	114005987	114007621	+	NA	NA	NA	NA	GRTP1	"hg19_refFlat_GRTP1:range=chr13:113978803-1140183665'pad=0,hg19_refFlat_GRTP1:range=chr13:113978803-1140183665'pad=0 3'pad=0 strand=- repeatMasking=none,-99.60chr13:113995987-114018463"	NA	inner
CUST_11395_PI429285431	1.7681191	A	0.9114568	A	1.81084404164943	0	lncRNA	12961-1_{1..326}	lnc-CPT2-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPT2-7:2	chr1	 53802776	 53803101	+	lnc-CPT2-7	lnc-CPT2-7:2	XLOC_000197	linc-DMRTB1-2	LRP8	NA	chr1:53792776-53793821	inter
CUST_22456_PI429285431	0.9219516	A	0.9085005	A	1.00936719212248	0	lncRNA	24044-1_{1..271}	lnc-SMYD3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMYD3-3:1	chr1	245778288	245778558	-	lnc-SMYD3-3	lnc-SMYD3-3:1	ENSG00000238224.1	RP11-522M21.2	KIF26B	NA	chr1:245768288-245788447	inner
CUST_47708_PI429285431	1.0851145	A	1.164928	A	0.946179953346857	0	lncRNA	51672-2_{3001..5619}	"gi|385137066|ref|NR_047604.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 34, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137066|ref|NR_047604.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 34, non-coding RNA"	ChrY	 15363259	 15365877	-	7404	NR_047604.1	NA	NA	NA	NA	NA	inter
CUST_31853_PI429285431	0.9709954	A	0.9065599	A	1.04567570608892	0	lncRNA	33586-1_{1..1908}	n338402|AK094873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|798|NULL|-0.8086450|-0.1961390	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338402|AK094873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|798|NULL|-0.8086450|-0.1961390	chr14	 74872602	 74874509	-	NA	NA	NA	NA	SYNDIG1L	NA	chr14:74872596-74884510	inner
CUST_40081_PI429285431	0.95359826	A	1.1157393	A	0.893697788868941	0	lncRNA	40928-1_{1..1123}	n407406|NR_026861|lncRNA|Homosapiens||RefGeneNoncode|NR_026861||-0.8407250|-0.0909794	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407406|NR_026861|lncRNA|Homosapiens||RefGeneNoncode|NR_026861||-0.8407250|-0.0909794	chr6	166337535	166338657	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50299_PI429285431	0.9074386	A	1.0840048	A	0.884806445350742	0	lncRNA	54017-1_{1..1881}	hg19_lincRNAsTranscripts_TCONS_l2_00028914 range=chr9:94897999-94900914 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028914 range=chr9:94897999-94900914 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 94897999	 94899879	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006060	0.96558833	A	2.3727117	A	0.377062773809934	0	lncRNA	ENST00000423455	NA	NA	NA	NA	XLOC_007601	NA	ENST00000423455	NA	NA	"BROAD Institute lincRNA (XLOC_007601), lincRNA [TCONS_00015771]"	chr9:137476902-137476961	hs|9q34.3	Agilent_HUMAN_G3V2	ENST00000423455	ENST00000423455	chr9	137476902	137476961	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003264	4.6606016	P	4.9293447	P	0.830042377671001	0	lncRNA	TCONS_00007046	NA	NA	NA	NA	XLOC_002932	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002932), lincRNA [TCONS_00007046]"	chr3:177484557-177484616	hs|3q26.32	Agilent_HUMAN_G3V2	TCONS_00007046	TCONS_00007046	chr3	177484557	177484616	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11916_PI429285431	0.9165852	A	0.9208344	A	0.997059012202992	0	lncRNA	13497-1_{1..310}	lnc-PML-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PML-3:1	chr15	 74268254	 74268563	+	lnc-PML-3	lnc-PML-3:1	XLOC_011307	linc-PML	STOML1	NA	chr15:74275560-74278524	inter
CUST_216_PI429285431	0.908572	A	0.9022807	A	1.00437031896797	0	lncRNA	206-1_{1..514}	"transcript_id ""ENST00000422305.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422305.1"" | genecode_v17"	chr1	 41726453	 41726966	+	ENSG00000235358.1	ENST00000422305.1	RP11-399E6.1	RP11-399E6.1-003	NA	NA	NA	inter
CUST_6557_PI429285431	0.89965904	A	1.1327767	A	0.850794339551415	0	lncRNA	6505-1_{1..573}	"transcript_id ""ENST00000358234.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000358234.4"" | genecode_v17"	chr19	 49834916	 49835488	-	ENSG00000197813.4	ENST00000358234.4	CTC-301O7.4	CTC-301O7.4-001	SLC6A16	"hg19_refFlat_CD37:range=chr19:49838798-498435855'pad=0,hg19_refFlat_CD37:range=chr19:49838798-498435855'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CD37:range=chr19:49840228-498435855'pad=0,hg19_refFlat_CD37:range=chr19:49840228-498435855'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20chr19:49824916-49828474"	NA	inner
CUST_14283_PI429285431	1.7842484	A	2.3638325	A	0.66915665401209	0	lncRNA	15942-1_{1..437}	lnc-BASP1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BASP1-4:3	chr5	 17485639	 17486075	+	lnc-BASP1-4	lnc-BASP1-4:3	XLOC_004309	linc-PRDM9-7	NA	NA	NA	inter
CUST_16477_PI429285431	3.8430645	P	4.687349	P	0.556986976539446	0	lncRNA	18175-2_{3001..5958}	lnc-AC114947.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC114947.1.1-2:1	chr5	 43074269	 43077226	+	lnc-AC114947.1.1-2	lnc-AC114947.1.1-2:1	XLOC_004366	linc-ZNF131-1	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00"	NA	inter
LNCA_21_P0003781	0.93026	A	0.9185517	A	1.00814859568049	0	lncRNA	TCONS_00008605	NA	NA	NA	NA	XLOC_004111	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004111), lincRNA [TCONS_00008605]"	chr4:146389692-146389633	hs|4q31.21	Agilent_HUMAN_G3V2	TCONS_00008605	TCONS_00008605	chr4	146389633	146389692	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14625_PI429285431	2.1394053	A	0.9443402	A	2.28955163232289	0	lncRNA	16296-1_{1..252}	lnc-ADAMTS8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAMTS8-1:1	chr11	130271679	130271930	-	lnc-ADAMTS8-1	lnc-ADAMTS8-1:1	XLOC_009604	linc-ZBTB44	ADAMTS8	NA	chr11:130274818-130281852	inter
CUST_10694_PI429285431	0.9295029	A	1.404885	A	0.719276263351511	0	lncRNA	12229-1_{1..261}	lnc-C15orf41-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf41-1:1	chr15	 36799335	 36799595	+	lnc-C15orf41-1	lnc-C15orf41-1:1	XLOC_011212	linc-C15orf41-1	NA	NA	NA	inter
CUST_42713_PI429285431	5.867859	P	5.899349	P	0.978409284955702	0	lncRNA	45645-1_{1..135}	ENST00000384334 ncrna:snoRNA chromosome:GRCh37:7:64530916:64531050:1 gene:ENSG00000207062 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384334 ncrna:snoRNA chromosome:GRCh37:7:64530916:64531050:1 gene:ENSG00000207062 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 64530916	 64531050	+	ENSG00000207062	ENST00000384334	NA	NA	NA	NA	NA	inter
CUST_5515_PI429285431	0.906815	A	0.90023667	A	1.00457016237497	0	lncRNA	5446-1_{1..554}	"transcript_id ""ENST00000566449.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566449.1"" | genecode_v17"	chr16	 34874400	 34874953	+	ENSG00000259791.1	ENST00000566449.1	RP11-14K3.7	RP11-14K3.7-001	NA	NA	NA	inter
CUST_50367_PI429285431	3.7599764	P	4.484477	P	0.605206505247423	0	lncRNA	54081-1_{1..247}	hg19_lincRNAsTranscripts_TCONS_l2_00030263 range=chrX:74743968-74844631 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030263 range=chrX:74743968-74844631 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 74743968	 74744214	+	NA	NA	NA	NA	ZDHHC15	NA	chrX:74733968-74743337	inter
LNCA_21_P0007049	0.9573356	A	0.9236456	A	1.02362692431941	0	lncRNA	TCONS_00018685	NA	NA	NA	NA	XLOC_008413	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008413), lincRNA [TCONS_00018685]"	chr10:23875022-23875081	hs|10p12.2	Agilent_HUMAN_G3V2	TCONS_00018685	TCONS_00018685	chr10	 23875022	 23875081	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_146_PI429285431	3.0940025	A	3.1575556	A	0.956904530086396	0	lncRNA	136-1_{1..937}	"transcript_id ""ENST00000425194.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425194.1"" | genecode_v17"	chr1	  4007209	  4008145	-	ENSG00000226374.1	ENST00000425194.1	RP13-614K11.2	RP13-614K11.2-001	NA	NA	NA	inter
CUST_49828_PI429285431	1.6683333	A	1.6989032	A	0.979033478903465	0	lncRNA	53586-1_{1..2202}	hg19_lincRNAsTranscripts_TCONS_l2_00025966 range=chr7:64660726-64694533 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025966 range=chr7:64660726-64694533 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 64660726	 64662927	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_52075_PI429285431	2.5388434	A	1.3857043	A	2.22397273297105	0	lncRNA	55604-1_{1..562}	hg19_lincRNAsTranscripts_TCONS_l2_00017539 range=chr22:16352061-16352999 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017539 range=chr22:16352061-16352999 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 16352061	 16352622	+	NA	NA	NA	NA	OR11H1	NA	chr22:16345913-16362999	inter
CUST_34151_PI429285431	0.9119445	A	0.9069909	A	1.00343947534084	0	lncRNA	35669-1_{1..2977}	n340993|D83017|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3459|NULL|3.1248400|-0.1235456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340993|D83017|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3459|NULL|3.1248400|-0.1235456	chr11	 20691167	 20694143	+	NA	NA	NA	NA	NELL1	NA	chr11:20691117-21597232	inner
CUST_34005_PI429285431	7.7546215	P	7.8053837	P	0.965426143334546	0	lncRNA	35542-1_{1..1600}	n340819|AL833395|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3283|NULL|1.2382900|-0.1581055	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340819|AL833395|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3283|NULL|1.2382900|-0.1581055	chr17	 71515984	 71517583	+	NA	NA	NA	NA	SDK2	NA	chr17:71505984-71527546	inner
CUST_1545_PI429285431	1.0053024	A	0.9246247	A	1.05751468703292	0	lncRNA	1532-1_{1..558}	"transcript_id ""ENST00000470523.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000470523.2"" | genecode_v17"	chr3	167584288	167584845	-	ENSG00000244706.2	ENST00000470523.2	RP11-298O21.3	RP11-298O21.3-001	NA	NA	NA	inter
CUST_24485_PI429285431	1.350467	A	1.696778	A	0.786592862217528	0	lncRNA	26037-1_{1..548}	lnc-GPR63-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR63-2:1	chr6	 96969517	 96970064	-	lnc-GPR63-2	lnc-GPR63-2:1	ENSG00000233797.1	UFL1-AS1	KIAA0776	NA	chr6:96969702-96979545	inter
CUST_38003_PI429285431	1.1301447	A	0.9099575	A	1.1648847287874	0	lncRNA	39089-1_{1..3000}	n377577|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029940||0.2537680|-0.3364523	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377577|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029940||0.2537680|-0.3364523	chr6	  4131252	  4134251	+	NA	NA	NA	NA	C6orf201	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ECI2:range=chr6:4116108-41357945'pad=0,hg19_refFlat_ECI2:range=chr6:4116108-41357945'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ECI2:range=chr6:4116108-41339055'pad=0,hg19_refFlat_ECI2:range=chr6:4116108-41339055'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00chr6:4121252-4130999"	NA	inner
CUST_25888_PI429285431	9.863795	P	9.8234625	P	1.02835080483495	0	lncRNA	27408-1_{1..3000}	lnc-YTHDC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YTHDC2-1:1	chr5	112771242	112774241	+	lnc-YTHDC2-1	lnc-YTHDC2-1:1	ENSG00000232633.3	CTD-2201G3.1	MCC	"hg19_refFlat_TSSK2:range=chr22:19118913-191199895'pad=0,hg19_refFlat_TSSK2:range=chr22:19118913-191199895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_TSSK1B:range=chr5:112769433-1127705365'pad=0,hg19_refFlat_TSSK1B:range=chr5:112769433-1127705365'pad=0 3'pad=0 strand=- repeatMasking=none,-101.10chr5:112761242-112782038"	NA	inner
CUST_1456_PI429285431	1.2174515	A	1.346287	A	0.914569365233494	0	lncRNA	1445-1_{1..348}	"transcript_id ""ENST00000597749.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597749.1"" | genecode_v17"	chr3	125605679	125606026	-	ENSG00000241288.2	ENST00000597749.1	RP11-379B18.5	RP11-379B18.5-002	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20"	NA	inter
CUST_21718_PI429285431	6.9581203	P	7.0866823	P	0.914742761845764	0	lncRNA	23328-1_{1..666}	lnc-LUZP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LUZP1-1:1	chr1	 23414291	 23414956	-	lnc-LUZP1-1	lnc-LUZP1-1:1	ENSG00000240553.1	RP1-184J9.2	LUZP1	NA	chr1:23410516-23424551	inner
CUST_45329_PI429285431	8.753201	P	8.527145	P	1.16963306393101	0	lncRNA	49769-1_{1..2528}	"gi|149274649|ref|NR_003582.1| Homo sapiens ATPase, class I, type 8B, member 5, pseudogene (ATP8B5P), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|149274649|ref|NR_003582.1| Homo sapiens ATPase, class I, type 8B, member 5, pseudogene (ATP8B5P), transcript variant 2, non-coding RNA"	Chr9	 35406752	 35409279	+	158381	NR_003582.1	NA	NA	NA	NA	NA	inter
CUST_20707_PI429285431	0.9287662	A	0.92147875	A	1.00506405462069	0	lncRNA	22342-2_{3001..3112}	lnc-TMEM106C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM106C-1:1	chr12	 48419618	 48419729	+	lnc-TMEM106C-1	lnc-TMEM106C-1:1	ENSG00000257985.1	RP1-228P16.4	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10"	NA	inter
CUST_50806_PI429285431	0.91726494	A	1.0293117	A	0.925274437961878	0	lncRNA	54457-1_{1..1115}	hg19_lincRNAsTranscripts_TCONS_l2_00004467 range=chr11:32474944-32479794 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004467 range=chr11:32474944-32479794 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 32474944	 32476058	+	NA	NA	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-29.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
CUST_27461_PI429285431	0.97920984	A	0.9258839	A	1.03765434151196	0	lncRNA	29031-1_{1..576}	n324637|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000132194|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000132194|-1.1229000|-0.4753235	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324637|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000132194|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000132194|-1.1229000|-0.4753235	chr4	118975003	118975578	+	NA	NA	NA	NA	NDST3	NA	chr4:118965003-119020551	inner
CUST_7008_PI429285431	1.0419271	A	1.4745619	A	0.740907426616859	0	lncRNA	6955-1_{1..588}	"transcript_id ""ENST00000420865.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420865.1"" | genecode_v17"	chrX	   950956	   951543	+	ENSG00000237531.1	ENST00000420865.1	RP11-309M23.1	RP11-309M23.1-001	NA	NA	NA	inter
CUST_3358_PI429285431	1.039319	A	1.0170447	A	1.01555917105565	0	lncRNA	3333-1_{1..758}	"transcript_id ""ENST00000443792.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443792.1"" | genecode_v17"	chr9	  5584490	  5585247	+	ENSG00000231509.1	ENST00000443792.1	RP11-574F11.3	RP11-574F11.3-001	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.40"	NA	inter
CUST_8418_PI429285431	2.789391	A	3.5146828	P	0.604874690071449	0	lncRNA	9991-2_{3001..4256}	lnc-GLT1D1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GLT1D1-1:1	chr12	129600610	129601865	+	lnc-GLT1D1-1	lnc-GLT1D1-1:1	ENSG00000249196	ENST00000512133	TMEM132D	NA	chr12:129587610-129607839	inner
CUST_23972_PI429285431	0.98171943	A	0.97348964	A	1.00572075712483	0	lncRNA	25527-1_{1..464}	lnc-ATP6V1E2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATP6V1E2-4:1	chr2	 46305859	 46306322	-	lnc-ATP6V1E2-4	lnc-ATP6V1E2-4:1	ENSG00000232696.1	AC017006.2	PRKCE	NA	chr2:46295859-46315967	inner
CUST_26286_PI429285431	1.9723766	A	2.2830284	A	0.806277406166102	0	lncRNA	27792-1_{1..597}	lnc-RIC3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RIC3-1:2	chr11	  8061064	  8061660	-	lnc-RIC3-1	lnc-RIC3-1:2	ENSG00000254921.1	RP11-236J17.6	TUB	"hg19_refFlat_TUB:range=chr11:8060421-81231665'pad=0,hg19_refFlat_TUB:range=chr11:8060421-81231665'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90chr11:8060180-8071246"	NA	inner
CUST_2853_PI429285431	1.6272737	A	1.6875175	A	0.959102027666158	0	lncRNA	2836-1_{1..728}	"transcript_id ""ENST00000600182.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600182.1"" | genecode_v17"	chr7	 63359257	 63359984	-	ENSG00000236299.3	ENST00000600182.1	RP11-340I6.7	RP11-340I6.7-004	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40"	NA	inter
LNCA_21_P0010827	1.0197569	A	0.94771594	A	1.05120275368573	0	lncRNA	TCONS_l2_00003048	NA	NA	NA	NA	XLOC_l2_001591	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001591), lincRNA [TCONS_l2_00003048]"	chr10:48325985-48326044	hs|10q11.22	Agilent_HUMAN_G3V2	TCONS_l2_00003048	TCONS_l2_00003048	chr10	 48325985	 48326044	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38696_PI429285431	3.3827097	P	3.7149062	P	0.794326202781657	0	lncRNA	39692-1_{1..2095}	n384095|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ztx.3||5.2941300|-0.1371481	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384095|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ztx.3||5.2941300|-0.1371481	chr22	 21362503	 21364597	-	NA	NA	NA	NA	P2RX6	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr22:21369442-21378576"	NA	inter
CUST_28396_PI429285431	0.91783184	A	0.9035192	A	1.0099701400027	0	lncRNA	30053-1_{1..324}	n325716|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045179|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045179|-0.8896540|-0.1266315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325716|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045179|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045179|-0.8896540|-0.1266315	chr13	 60157333	 60157656	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13945_PI429285431	1.6645868	A	1.0324733	A	1.54983378596358	0	lncRNA	15592-1_{1..1609}	lnc-CAMK1G-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CAMK1G-5:3	chr1	208909423	208911031	+	lnc-CAMK1G-5	lnc-CAMK1G-5:3	XLOC_000545	linc-LOC642587-4	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90"	NA	inter
CUST_46462_PI429285431	1.6498655	A	1.1098549	A	1.45398320021924	0	lncRNA	50663-1_{1..1794}	"gi|315467864|ref|NR_037673.1| Homo sapiens SERF2-C15orf63 readthrough (SERF2-C15ORF63), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315467864|ref|NR_037673.1| Homo sapiens SERF2-C15orf63 readthrough (SERF2-C15ORF63), non-coding RNA"	Chr15	 44084174	 44085967	+	100529067	NR_037673.1	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60"	NA	inter
CUST_35087_PI429285431	10.655519	P	10.837042	P	0.881771650939765	0	lncRNA	36494-3_{6001..8608}	n342048|D86973|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4529|NULL|34.1658000|-0.1596028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342048|D86973|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4529|NULL|34.1658000|-0.1596028	chr12	120571073	120573680	-	NA	NA	NA	NA	GCN1L1	NA	chr12:120565014-120632513	inner
CUST_48143_PI429285431	4.8705587	P	6.2736073	P	0.378129261083799	0	lncRNA	52010-1_{1..2129}	"gi|310110487|ref|XR_111368.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 540 (LINC00540), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310110487|ref|XR_111368.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 540 (LINC00540), misc_RNA"	NA	NA	NA	NA	NA	XR_111368.1	NA	NA	NA	NA	NA	Unknown
CUST_38615_PI429285431	6.92518	P	7.4301176	P	0.704690856471435	0	lncRNA	39619-1_{1..2791}	n383750|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ttk.1||0.4549280|-0.3159724	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n383750|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ttk.1||0.4549280|-0.3159724	chr2	133062358	133065148	+	NA	NA	NA	NA	ZNF806	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30chr2:133062580-133076309"	NA	inter
CUST_7537_PI429285431	1.0859907	A	0.91387177	A	1.12671210630163	0	lncRNA	9174-1_{1..1968}	lnc-CLLU1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CLLU1.1-1:1	chr12	 92875794	 92877761	+	lnc-CLLU1.1-1	lnc-CLLU1.1-1:1	ENSG00000205056	CLLU1	NA	NA	NA	inter
CUST_32387_PI429285431	0.8978839	A	0.89965546	A	0.998772801805139	0	lncRNA	34064-1_{1..1891}	n338978|BC043586|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1406|NULL|-1.1075300|-0.2538872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338978|BC043586|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1406|NULL|-1.1075300|-0.2538872	chr2	149635629	149637519	-	NA	NA	NA	NA	KIF5C	NA	chr2:149627550-149653156	inner
CUST_26513_PI429285431	1.7528753	A	1.8216714	A	0.953433287076601	0	lncRNA	28021-1_{1..3000}	lnc-MFSD8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MFSD8-1:1	chr4	128761353	128764352	-	lnc-MFSD8-1	lnc-MFSD8-1:1	ENSG00000261668.1	RP11-50D9.3	HSPA4L	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90chr4:128751353-128754522"	NA	inter
CUST_29712_PI429285431	5.967005	P	7.719349	P	0.296819133744955	0	lncRNA	31474-1_{1..240}	n333380|BC005178|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086478|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086478|-1.1429900|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333380|BC005178|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086478|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086478|-1.1429900|-1.0000000	chr3	193853936	193854175	+	NA	NA	NA	NA	HES1	NA	chr3:193853931-193856401	inner
CUST_23244_PI429285431	2.5621033	A	0.8994168	A	3.16605539969491	0	lncRNA	24817-1_{1..3000}	lnc-RP11-298P3.4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-RP11-298P3.4.1-1:1	chr13	 33070344	 33073343	-	lnc-RP11-298P3.4.1-1	lnc-RP11-298P3.4.1-1:1	ENSG00000230905.1	MINOS1P1	N4BP2L2	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80chr13:33060344-33082629"	NA	inner
CUST_46745_PI429285431	3.1135018	A	3.690494	P	0.670359920113461	0	lncRNA	50896-2_{3001..6000}	"gi|379991134|ref|NR_046431.1| Homo sapiens CTS telomere maintenance complex component 1 (CTC1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">gi|379991134|ref|NR_046431.1| Homo sapiens CTS telomere maintenance complex component 1 (CTC1), transcript variant 2, non-coding RNA"	Chr17	  8131139	  8134138	-	80169	NR_046431.1	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80"	NA	inter
CUST_34855_PI429285431	1.132255	A	0.917617	A	1.16041270793015	0	lncRNA	36281-1_{1..978}	n341761|CR749681|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4235|NULL|-0.7983750|-0.1821271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341761|CR749681|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4235|NULL|-0.7983750|-0.1821271	chr9	115923285	115924262	-	NA	NA	NA	NA	FKBP15	"hg19_refFlat_SLC31A2:range=chr9:115913355-1159251975'pad=0,hg19_refFlat_SLC31A2:range=chr9:115913355-1159251975'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50chr9:115927800-115934232"	NA	inner
CUST_47772_PI429285431	3.7017298	P	1.1313269	A	5.93975283974375	0	lncRNA	51703-1_{1..3000}	"gi|385137102|ref|NR_047640.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 70, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137102|ref|NR_047640.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 70, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047640.1	NA	NA	NA	NA	NA	inter
CUST_42792_PI429285431	5.3592	P	5.4068775	P	0.967492578700762	0	lncRNA	45783-1_{1..72}	ENST00000363543 ncrna:snoRNA chromosome:GRCh37:14:101453383:101453454:1 gene:ENSG00000200413 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363543 ncrna:snoRNA chromosome:GRCh37:14:101453383:101453454:1 gene:ENSG00000200413 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101453383	101453454	+	ENSG00000200413	ENST00000363543	NA	NA	NA	NA	NA	inter
CUST_435_PI429285431	2.134124	A	2.062817	A	1.05066809838659	0	lncRNA	427-1_{1..590}	"transcript_id ""ENST00000432038.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432038.1"" | genecode_v17"	chr1	147634989	147635578	+	ENSG00000232265.2	ENST00000432038.1	XXyac-YX155B6.5	XXyac-YX155B6.5-001	NA	NA	NA	inter
CUST_36478_PI429285431	0.92806077	A	0.91963065	A	1.0058604193698	0	lncRNA	37683-1_{1..1491}	n344983|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_532|NULL|-1.3206100|-0.3068950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344983|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_532|NULL|-1.3206100|-0.3068950	chr8	130039859	130041349	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30"	NA	inter
CUST_9890_PI429285431	0.90633684	A	1.2100539	A	0.810162346333012	0	lncRNA	11414-1_{1..307}	lnc-TCEAL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCEAL1-1:1	chrX	102883334	102883640	+	lnc-TCEAL1-1	lnc-TCEAL1-1:1	XLOC_008037	linc-TCEAL1	TCEAL1	NA	chrX:102883648-102885881	inter
CUST_38555_PI429285431	0.9206593	A	0.91047585	A	1.00708360050092	0	lncRNA	39565-1_{1..1117}	n383428|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002npe.2||0.4449740|-0.3259479	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n383428|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002npe.2||0.4449740|-0.3259479	chr19	 20959109	 20960225	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5958_PI429285431	1.8778175	A	2.6869526	A	0.570723906086375	0	lncRNA	5887-1_{1..639}	"transcript_id ""ENST00000538693.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000538693.1"" | genecode_v17"	chr17	 70026432	 70027070	+	ENSG00000256124.1	ENST00000538693.1	RP11-84E24.3	RP11-84E24.3-001	NA	NA	NA	inter
CUST_28741_PI429285431	4.6173353	P	4.56174	P	1.03928785671841	0	lncRNA	30442-1_{1..522}	n326136|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097697|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097697|-1.1096300|-0.2355967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326136|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097697|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097697|-1.1096300|-0.2355967	chr1	244919971	244920492	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22860_PI429285431	0.91110283	A	0.9033779	A	1.00536887447733	0	lncRNA	24438-1_{1..356}	lnc-SLC2A13-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC2A13-3:1	chr12	 40837625	 40837980	-	lnc-SLC2A13-3	lnc-SLC2A13-3:1	ENSG00000258167.1	RP11-115F18.1	LOC100652946	NA	chr12:40827625-40847649	inter
CUST_35865_PI429285431	1.9879049	A	1.3315938	A	1.57604759134738	0	lncRNA	37259-1_{1..3000}	n344531|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_79|NULL|-1.6447100|-0.2367879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344531|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_79|NULL|-1.6447100|-0.2367879	chr12	 30948614	 30951613	+	NA	NA	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_27405_PI429285431	0.9145536	A	0.912768	A	1.00123844985205	0	lncRNA	28969-1_{1..543}	n324570|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039989|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039989|-0.5591090|-0.3508335	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324570|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039989|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039989|-0.5591090|-0.3508335	chr6	 21630685	 21631227	-	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30"	NA	inter
CUST_32859_PI429285431	5.35192	P	5.326731	P	1.01761299557519	0	lncRNA	34489-2_{3001..5263}	n339521|X87832|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1962|NULL|19.2526000|-0.1192334	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339521|X87832|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1962|NULL|19.2526000|-0.1192334	chr3	126710501	126712763	+	NA	NA	NA	NA	PLXNA1	NA	chr3:126707437-126756235	inner
CUST_52110_PI429285431	3.8489542	P	4.59822	P	0.594906233411684	0	lncRNA	55635-1_{1..333}	hg19_lincRNAsTranscripts_TCONS_l2_00017873 range=chr22:18766243-18768441 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017873 range=chr22:18766243-18768441 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 18766243	 18766575	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36539_PI429285431	0.9137791	A	0.904395	A	1.00652576306544	0	lncRNA	37737-1_{1..1674}	n345039|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_588|NULL|-1.3426200|-0.3269408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345039|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_588|NULL|-1.3426200|-0.3269408	chr9	  2763772	  2765445	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
CUST_12080_PI429285431	0.92535	A	0.92836416	A	0.997912924471479	0	lncRNA	13672-1_{1..261}	lnc-IFI44-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IFI44-2:5	chr1	 79871919	 79872179	+	lnc-IFI44-2	lnc-IFI44-2:5	XLOC_000266	linc-LPHN2-2	NA	NA	NA	inter
CUST_4220_PI429285431	7.761914	P	8.077379	P	0.80359194051584	0	lncRNA	4179-1_{1..565}	"transcript_id ""ENST00000544329.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544329.1"" | genecode_v17"	chr12	 31151851	 31152415	-	ENSG00000226472.3	ENST00000544329.1	RP11-551L14.4	RP11-551L14.4-002	TSPAN11	NA	chr12:31141851-31149537	inter
CUST_25421_PI429285431	4.8049774	P	4.8775444	P	0.950944467962199	0	lncRNA	26951-1_{1..480}	lnc-CLUAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CLUAP1-1:1	chr16	  3595606	  3596085	+	lnc-CLUAP1-1	lnc-CLUAP1-1:1	ENSG00000262312.1	LA16c-390H2.4	CLUAP1	NA	chr16:3585606-3587669	inner
CUST_8471_PI429285431	6.808117	P	6.8805804	P	0.951012757781917	0	lncRNA	10037-1_{1..2412}	lnc-KIAA0564-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0564-2:1	chr13	 42883549	 42885960	-	lnc-KIAA0564-2	lnc-KIAA0564-2:1	ENSG00000247944	ENST00000499294	AKAP11	"hg19_refFlat_AKAP11:range=chr13:42860485-428933645'pad=0,hg19_refFlat_AKAP11:range=chr13:42860485-428933645'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30chr13:42873549-42894992"	NA	inner
CUST_33641_PI429285431	0.92769945	A	0.91443074	A	1.00923959284453	0	lncRNA	35206-1_{1..339}	n340403|AF056428|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2864|NULL|-1.2444000|-0.3595522	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340403|AF056428|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2864|NULL|-1.2444000|-0.3595522	chr5	 10985906	 10986244	-	NA	NA	NA	NA	CTNND2	NA	chr5:10975906-10996242	inner
CUST_50832_PI429285431	5.4977174	P	5.5820203	P	0.943240192788035	0	lncRNA	54478-3_{6001..6641}	hg19_lincRNAsTranscripts_TCONS_l2_00004568 range=chr11:65266283-65273709 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004568 range=chr11:65266283-65273709 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65272283	 65272923	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1417_PI429285431	0.9155489	A	0.9200413	A	0.996890948746887	0	lncRNA	1406-1_{1..345}	"transcript_id ""ENST00000599131.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599131.1"" | genecode_v17"	chr3	107039904	107040248	-	ENSG00000239828.2	ENST00000599131.1	RP11-446H18.5	RP11-446H18.5-004	CCDC54	NA	chr3:107046680-107051591	inter
LNCA_21_P0013415	0.9332702	A	0.9169073	A	1.01140646118472	0	lncRNA	ENST00000418442	NA	NA	NA	NA	XLOC_l2_013734	NA	ENST00000418442	THC2659460	NA	"BROAD Institute lincRNA (XLOC_l2_013734), lincRNA [TCONS_l2_00027289]"	chr7:20046966-20046907	hs|7p21.1	Agilent_HUMAN_G3V2	ENST00000418442	ENST00000418442	chr7	 20046907	 20046966	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14684_PI429285431	0.9802422	A	0.93190634	A	1.0340714404863	0	lncRNA	16353-1_{1..1909}	lnc-LVRN.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LVRN.1-1:2	chr5	115294126	115296034	+	lnc-LVRN.1-1	lnc-LVRN.1-1:2	XLOC_004517	linc-AQPEP	AQPEP	NA	chr5:115298151-115305651	inter
CUST_18862_PI429285431	1.0174772	A	0.92315835	A	1.06756125365889	0	lncRNA	20554-1_{1..541}	lnc-GPHN-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPHN-1:5	chr14	 66965071	 66965611	+	lnc-GPHN-1	lnc-GPHN-1:5	ENSG00000196553	NCRNA00238	GPHN	NA	chr14:66974125-66975271	inter
CUST_30671_PI429285431	0.91936964	A	0.9043593	A	1.01045868856156	0	lncRNA	32453-1_{1..267}	n336138|X92027|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324505|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324505|-1.3260300|-0.1862892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336138|X92027|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324505|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324505|-1.3260300|-0.1862892	chr14	 22466241	 22466507	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22091_PI429285431	3.453428	P	3.6658597	P	0.863081258711954	0	lncRNA	23696-1_{1..749}	lnc-SMCR7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SMCR7-1:1	chr17	 18171394	 18172142	+	lnc-SMCR7-1	lnc-SMCR7-1:1	ENSG00000260647.1	RP1-178F10.1	FLII	NA	chr17:18161394-18162055	inter
CUST_335_PI429285431	1.2250546	A	0.91418016	A	1.24045933390639	0	lncRNA	328-1_{1..474}	"transcript_id ""ENST00000439146.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439146.1"" | genecode_v17"	chr1	101789393	101789866	+	ENSG00000231671.1	ENST00000439146.1	RP11-157N3.1	RP11-157N3.1-002	NA	NA	NA	inter
CUST_40343_PI429285431	9.335151	P	8.771448	P	1.47805811994133	0	lncRNA	41147-2_{3001..3589}	n409061|NR_033118|lncRNA|Homosapiens||RefGeneNoncode|NR_033118||0.5404500|-0.2717276	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409061|NR_033118|lncRNA|Homosapiens||RefGeneNoncode|NR_033118||0.5404500|-0.2717276	chr3	147106834	147107422	-	NA	NA	NA	NA	ZIC4	NA	chr3:147103835-147120217	inner
CUST_35310_PI429285431	2.1650436	A	3.6057549	P	0.368385632313669	0	lncRNA	36713-1_{1..1000}	n342333|BC035790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4825|NULL|-0.7569930|-0.2369760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342333|BC035790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4825|NULL|-0.7569930|-0.2369760	chr1	179559506	179560505	+	NA	NA	NA	NA	TDRD5	NA	chr1:179555840-179570440	inter
CUST_6386_PI429285431	3.9717681	P	4.560047	P	0.665135924866083	0	lncRNA	6315-1_{1..1178}	"transcript_id ""ENST00000596996.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000596996.1"" | genecode_v17"	chr19	 21753624	 21754801	-	ENSG00000268555.1	ENST00000596996.1	RP11-678G14.3	RP11-678G14.3-001	NA	NA	NA	inter
CUST_37060_PI429285431	0.90436304	A	0.8997958	A	1.00317078586942	0	lncRNA	38192-1_{1..397}	n345509|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1058|NULL|-1.6445400|-0.1214129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345509|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1058|NULL|-1.6445400|-0.1214129	chr2	  3180848	  3181244	+	NA	NA	NA	NA	TSSC1	NA	chr2:3192741-3194717	inter
CUST_40204_PI429285431	2.046704	A	2.9657798	A	0.528847695127163	0	lncRNA	41035-1_{1..3000}	n408036|NR_027816|lncRNA|Homosapiens||RefGeneNoncode|NR_027816||7.6441700|-0.1432517	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408036|NR_027816|lncRNA|Homosapiens||RefGeneNoncode|NR_027816||7.6441700|-0.1432517	chr7	  4169316	  4172315	+	NA	NA	NA	NA	SDK1	NA	chr7:4159316-4308632	inner
CUST_12605_PI429285431	4.8177996	P	4.5127525	P	1.23545897078443	0	lncRNA	14218-1_{1..209}	lnc-EPHA4-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPHA4-3:2	chr2	221618625	221618833	-	lnc-EPHA4-3	lnc-EPHA4-3:2	XLOC_002497	linc-OBSL1-1	NA	NA	NA	inter
CUST_18039_PI429285431	5.041648	P	5.239556	P	0.871813832932085	0	lncRNA	19775-1_{1..268}	lnc-CD276-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD276-2:2	chr15	 74061094	 74061361	+	lnc-CD276-2	lnc-CD276-2:2	XLOC_011305	linc-TBC1D21	NA	NA	NA	inter
CUST_48035_PI429285431	6.291318	P	6.558476	P	0.830954852716111	0	lncRNA	51916-1_{1..775}	"gi|410173838|ref|XR_172411.1| PREDICTED: Homo sapiens uncharacterized LOC101060533 (LOC101060533), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173838|ref|XR_172411.1| PREDICTED: Homo sapiens uncharacterized LOC101060533 (LOC101060533), misc_RNA"	NA	NA	NA	NA	NA	XR_172411.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006434	6.423317	P	5.8913283	P	1.44592096923411	0	lncRNA	ENST00000439434	XR_109777	XR_109777	NA	Hs.161358	XLOC_008074	NA	ENST00000439434	THC2696909	NA	"PREDICTED: Homo sapiens hypothetical LOC100506790, transcript variant 2 (LOC100506790), miscRNA [XR_109777]"	chrX:134531579-134531638	hs|Xq26.3	Agilent_HUMAN_G3V2	ENST00000439434	ENST00000439434	chrX	134531579	134531638	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014584	1.5752654	A	2.2598028	A	0.622205304726073	0	lncRNA	XR_110384	XR_110384	XR_110384	NA	Hs.675200	LOC100507153	uncharacterized LOC100507153	NA	THC2508918	NA	"PREDICTED: Homo sapiens hypothetical LOC100507153 (LOC100507153), miscRNA [XR_110384]"	chr3:197375438-197375379	hs|3q29	Agilent_HUMAN_G3V2	XR_110384	XR_110384	chr3	197375379	197375438	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18696_PI429285431	6.4484715	P	6.5822086	P	0.911467360737547	0	lncRNA	20395-1_{1..1380}	lnc-GPR20-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GPR20-2:1	chr8	142402508	142403887	-	lnc-GPR20-2	lnc-GPR20-2:1	ENSG00000244998	CTD-3064M3.4	NA	"hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30"	NA	inter
CUST_18963_PI429285431	2.76356	A	2.8680456	A	0.930136528241224	0	lncRNA	20655-1_{1..3000}	lnc-PLCD1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLCD1-1:9	chr3	 37862505	 37865504	-	lnc-PLCD1-1	lnc-PLCD1-1:9	ENSG00000235257	AC093415.2	ITGA9	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30chr3:37852505-37861281"	NA	inter
CUST_11886_PI429285431	0.9082707	A	0.9012549	A	1.00487482547673	0	lncRNA	13468-1_{1..301}	lnc-RP13-395E19.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP13-395E19.1.1-1:1	chr15	 32500193	 32500493	-	lnc-RP13-395E19.1.1-1	lnc-RP13-395E19.1.1-1:1	XLOC_011414	linc-OTUD7A-1	NA	NA	NA	inter
LNCA_21_P0006615	0.9224885	A	0.90625846	A	1.01131332350046	0	lncRNA	XR_109009	XR_109009	XR_109009	NA	NA	LOC100507228	uncharacterized LOC100507228	NA	THC2504213	NA	"PREDICTED: Homo sapiens hypothetical LOC100507228 (LOC100507228), miscRNA [XR_109009]"	chr10:11722422-11722481	hs|10p14	Agilent_HUMAN_G3V2	XR_109009	XR_109009	chr10	 11722422	 11722481	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11704_PI429285431	6.461639	P	6.658138	P	0.872665700928499	0	lncRNA	13282-1_{1..410}	lnc-DUSP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DUSP1-1:1	chr5	172233950	172234359	-	lnc-DUSP1-1	lnc-DUSP1-1:1	XLOC_005083	linc-DUSP1-1	NA	NA	NA	inter
CUST_25515_PI429285431	3.8903837	P	3.520135	P	1.29257563299319	0	lncRNA	27045-1_{1..508}	lnc-ANKAR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKAR-1:1	chr2	190630185	190630692	+	lnc-ANKAR-1	lnc-ANKAR-1:1	ENSG00000253559.1	OSGEPL1-AS1	OSGEPL1	NA	chr2:190620185-190627924	inter
CUST_33279_PI429285431	5.6500273	P	5.7846913	P	0.910881950976284	0	lncRNA	34863-1_{1..720}	n339989|X64802|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2442|NULL|2.1720600|-0.1273038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339989|X64802|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2442|NULL|2.1720600|-0.1273038	chr4	 47945260	 47945979	-	NA	NA	NA	NA	CNGA1	NA	chr4:47937994-48014961	inner
CUST_27120_PI429285431	2.285965	A	2.2180643	A	1.04819032660213	0	lncRNA	28654-1_{1..388}	n324234|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327604|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327604|-1.3136400|-0.4918895	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324234|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327604|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327604|-1.3136400|-0.4918895	chr7	 17442178	 17442565	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28441_PI429285431	1.5321577	A	1.2003227	A	1.25861321857936	0	lncRNA	30100-1_{1..437}	n325765|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044404|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044404|-1.0788500|-0.1894343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325765|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044404|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044404|-1.0788500|-0.1894343	chr13	 31770290	 31770726	+	NA	NA	NA	NA	B3GALTL	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60chr13:31774112-31780849"	NA	inter
CUST_47700_PI429285431	1.8265766	A	1.0988736	A	1.65600037553439	0	lncRNA	51668-3_{6001..6399}	"gi|385137108|ref|NR_047646.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 76, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137108|ref|NR_047646.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 76, non-coding RNA"	ChrY	 15366259	 15366657	-	7404	NR_047646.1	NA	NA	NA	NA	NA	inter
CUST_15741_PI429285431	0.9102541	A	1.5519202	A	0.640972292723593	0	lncRNA	17428-1_{1..815}	lnc-KATNAL1-3:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KATNAL1-3:17	chr13	 30938206	 30939020	-	lnc-KATNAL1-3	lnc-KATNAL1-3:17	XLOC_010556	linc-KATNAL1-3	NA	NA	NA	inter
CUST_25990_PI429285431	6.9359546	P	7.2488256	P	0.805038117680285	0	lncRNA	27509-1_{1..606}	lnc-TECRL-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TECRL-4:2	chr4	 63031232	 63031837	-	lnc-TECRL-4	lnc-TECRL-4:2	ENSG00000248692.1	RP11-84A1.3	NA	NA	NA	inter
CUST_3845_PI429285431	1.1168334	A	0.9220952	A	1.14451645100882	0	lncRNA	3814-1_{1..587}	"transcript_id ""ENST00000524824.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524824.1"" | genecode_v17"	chr11	   327310	   327896	+	ENSG00000255328.1	ENST00000524824.1	RP11-326C3.12	RP11-326C3.12-003	IFITM3	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40chr11:319673-320914"	NA	inter
CUST_46434_PI429285431	0.9673847	A	1.4223436	A	0.729530954956591	0	lncRNA	50644-1_{1..3000}	"gi|375493495|ref|NR_046324.1| Homo sapiens cholinergic receptor, nicotinic, alpha 7 (neuronal) (CHRNA7), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375493495|ref|NR_046324.1| Homo sapiens cholinergic receptor, nicotinic, alpha 7 (neuronal) (CHRNA7), transcript variant 3, non-coding RNA"	Chr15	 32322686	 32325685	+	1139	NR_046324.1	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.00"	NA	inter
CUST_52134_PI429285431	5.4982734	P	5.8113003	P	0.804951128636814	0	lncRNA	55658-1_{1..932}	hg19_lincRNAsTranscripts_TCONS_l2_00017892 range=chr22:20386105-20387519 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017892 range=chr22:20386105-20387519 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 20386105	 20387036	-	NA	NA	NA	NA	TMEM191B	NA	chr22:20376105-20380440	inter
CUST_23191_PI429285431	3.2572575	P	1.4898565	A	3.40440104667667	0	lncRNA	24763-1_{1..503}	lnc-C17orf97-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C17orf97-3:4	chr17	   182847	   183349	+	lnc-C17orf97-3	lnc-C17orf97-3:4	ENSG00000262061.1	RP11-1260E13.4	RPH3AL	NA	chr17:172847-193235	inner
LNCA_21_P0004352	3.211016	P	3.206542	P	1.00310595399649	0	lncRNA	TCONS_00010246	NA	NA	NA	NA	XLOC_004707	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004707), lincRNA [TCONS_00010246]"	chr5:1929066-1929007	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00010246	TCONS_00010246	chr5	  1929007	  1929066	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27859_PI429285431	5.618513	P	5.8784733	P	0.835110899646376	0	lncRNA	29452-1_{1..429}	n325095|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326022|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326022|-0.2675370|-0.1547687	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325095|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326022|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326022|-0.2675370|-0.1547687	chr2	240815649	240816077	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80"	NA	inter
LNCA_21_P0005880	4.7801843	P	5.510892	P	0.602608237729367	0	lncRNA	TCONS_00015127	NA	NA	NA	NA	XLOC_007176	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007176), lincRNA [TCONS_00015127]"	chr8:104457350-104457291	hs|8q22.3	Agilent_HUMAN_G3V2	TCONS_00015127	TCONS_00015127	chr8	104457291	104457350	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013528	6.254082	P	6.9177227	P	0.63128321616486	0	lncRNA	ENST00000521696	NA	NA	NA	NA	XLOC_l2_014602	NA	ENST00000521696	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014602), lincRNA [TCONS_l2_00028340]"	chr8:100025156-100025097	hs|8q22.2	Agilent_HUMAN_G3V2	ENST00000521696	ENST00000521696	chr8	100025097	100025156	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27036_PI429285431	1.616306	A	0.9061847	A	1.63594165926799	0	lncRNA	28567-1_{1..447}	n324142|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051937|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051937|-1.1143000|-0.4251965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324142|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051937|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051937|-1.1143000|-0.4251965	chr9	 22757173	 22757619	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36506_PI429285431	1.5859047	A	0.9844832	A	1.51721075125188	0	lncRNA	37705-1_{1..2106}	n345006|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_555|NULL|-1.4203200|-0.3340559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345006|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_555|NULL|-1.4203200|-0.3340559	chr8	 90732819	 90734924	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60"	NA	inter
CUST_15973_PI429285431	6.348826	P	6.4828143	P	0.911308671158295	0	lncRNA	17671-1_{1..617}	lnc-C14orf79-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf79-2:2	chr14	105561877	105562493	+	lnc-C14orf79-2	lnc-C14orf79-2:2	XLOC_010952	linc-BTBD6-1	NA	NA	NA	inter
CUST_50232_PI429285431	5.925417	P	5.970937	P	0.968940512427948	0	lncRNA	53956-1_{1..2325}	hg19_lincRNAsTranscripts_TCONS_l2_00028769 range=chr9:67290021-67334319 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028769 range=chr9:67290021-67334319 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 67290021	 67292345	+	NA	NA	NA	NA	NA	"hg19_refFlat_BMS1:range=chr10:43279843-433265445'pad=0,hg19_refFlat_BMS1:range=chr10:43279843-433265445'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00"	NA	inter
CUST_4599_PI429285431	3.0097818	A	3.2535903	P	0.844512978682058	0	lncRNA	4548-1_{1..702}	"transcript_id ""ENST00000400430.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000400430.2"" | genecode_v17"	chr13	 41025131	 41025832	-	ENSG00000215483.4	ENST00000400430.2	LINC00598	LINC00598-001	NA	NA	NA	inter
CUST_26236_PI429285431	5.5612416	P	5.751546	P	0.876420782278126	0	lncRNA	27743-1_{1..399}	lnc-RRP8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RRP8-1:1	chr11	  6625289	  6625687	-	lnc-RRP8-1	lnc-RRP8-1:1	ENSG00000254400.1	RP11-732A19.8	TPP1	"hg19_refFlat_ILK:range=chr11:6625502-66318425'pad=0,hg19_refFlat_ILK:range=chr11:6625502-66318425'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.80chr11:6633997-6635650"	NA	inner
CUST_28291_PI429285431	5.9408193	P	4.9725146	P	1.95654012834315	0	lncRNA	29931-1_{1..895}	n325591|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000133428|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000133428|-1.2576800|-0.4545947	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325591|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000133428|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000133428|-1.2576800|-0.4545947	chr16	 26236967	 26237861	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22201_PI429285431	3.0814776	A	3.2265496	A	0.904334244190193	0	lncRNA	23801-1_{1..286}	lnc-CPLX1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPLX1-3:1	chr4	   758700	   758985	-	lnc-CPLX1-3	lnc-CPLX1-3:1	ENSG00000233799.1	AC139887.4	PCGF3	"hg19_refFlat_PCGF3:range=chr4:727470-7598675'pad=0,hg19_refFlat_PCGF3:range=chr4:727470-7598675'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40chr4:748700-764428"	NA	inner
LNCA_21_P0005904	0.925765	A	0.91351736	A	1.00852555442528	0	lncRNA	TCONS_00015168	NA	NA	NA	NA	XLOC_007214	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007214), lincRNA [TCONS_00015168]"	chr8:128153653-128153594	hs|8q24.21	Agilent_HUMAN_G3V2	TCONS_00015168	TCONS_00015168	chr8	128153594	128153653	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18162_PI429285431	2.3582702	A	2.3729742	A	0.989859726652065	0	lncRNA	19897-1_{1..2020}	lnc-C6orf183-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C6orf183-1:1	chr6	109560531	109562550	+	lnc-C6orf183-1	lnc-C6orf183-1:1	ENSG00000243587	C6orf183	C6orf183	NA	chr6:109550531-109563542	inter
CUST_12535_PI429285431	0.90613234	A	0.906527	A	0.999726479947152	0	lncRNA	14147-1_{1..1063}	lnc-NETO1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NETO1-1:6	chr18	 70931475	 70932537	-	lnc-NETO1-1	lnc-NETO1-1:6	XLOC_012877	linc-NETO1-3	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40"	NA	inter
CUST_49580_PI429285431	1.5526171	A	2.9123569	A	0.389652560019595	0	lncRNA	53369-1_{1..601}	hg19_lincRNAsTranscripts_TCONS_l2_00024448 range=chr6:140175896-140181452 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024448 range=chr6:140175896-140181452 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	140175896	140176496	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43469_PI429285431	5.749031	P	6.4184923	P	0.628741414464285	0	lncRNA	48271-2_{3001..3065}	"gi|379030593|ref|NR_046406.1| Homo sapiens thioredoxin domain containing 12 (endoplasmic reticulum) (TXNDC12), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379030593|ref|NR_046406.1| Homo sapiens thioredoxin domain containing 12 (endoplasmic reticulum) (TXNDC12), transcript variant 3, non-coding RNA"	Chr1	 52500769	 52500833	-	51060	NR_046406.1	NA	NA	NA	NA	NA	inter
CUST_42987_PI429285431	10.797986	P	11.025859	P	0.853892879009918	0	lncRNA	46143-1_{1..86}	ENST00000411292 ncrna:snoRNA chromosome:GRCh37:16:71792305:71792390:-1 gene:ENSG00000223224 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000411292 ncrna:snoRNA chromosome:GRCh37:16:71792305:71792390:-1 gene:ENSG00000223224 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 71792305	 71792390	-	ENSG00000223224	ENST00000411292	NA	NA	AP1G1	NA	chr16:71782305-71802390	inner
CUST_33894_PI429285431	0.97447693	A	0.961144	A	1.0092845190468	0	lncRNA	35438-1_{1..2586}	n340686|AL117601|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3149|NULL|-1.1847800|-0.4732928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340686|AL117601|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3149|NULL|-1.1847800|-0.4732928	chr17	 42751055	 42753640	-	NA	NA	NA	NA	C17orf104	"hg19_refFlat_C17orf104:range=chr17:42733982-427515645'pad=0,hg19_refFlat_C17orf104:range=chr17:42733982-427515645'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70chr17:42741055-42753167"	NA	inner
CUST_22742_PI429285431	3.8444066	P	3.4690723	P	1.29714009196742	0	lncRNA	24325-1_{1..696}	lnc-MSMP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MSMP-1:1	chr9	 35757728	 35758423	-	lnc-MSMP-1	lnc-MSMP-1:1	ENSG00000228843.1	RP11-112J3.15	RGP1	NA	chr9:35749277-35753264	inter
LNCA_21_P0012252	4.7841687	P	5.522463	P	0.599447661166462	0	lncRNA	TCONS_l2_00017628	NA	NA	NA	NA	XLOC_l2_009311	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009311), lincRNA [TCONS_l2_00017628]"	chr22:21424300-21424359	hs|22q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00017628	TCONS_l2_00017628	chr22	 21424300	 21424359	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40356_PI429285431	4.0265875	P	2.7248714	A	2.46521948624681	0	lncRNA	41157-1_{1..1546}	n409088|NR_033192|lncRNA|Homosapiens||RefGeneNoncode|NR_033192||2.8939500|-0.2565755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409088|NR_033192|lncRNA|Homosapiens||RefGeneNoncode|NR_033192||2.8939500|-0.2565755	chr12	 82746082	 82747627	-	NA	NA	NA	NA	C12orf26	"hg19_refFlat_METTL25:range=chr12:82752345-828728035'pad=0,hg19_refFlat_METTL25:range=chr12:82752345-828728035'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.60chr12:82752276-82762584"	NA	inner
LNCA_21_P0006707	0.94321024	A	0.9212871	A	1.01531200838453	0	lncRNA	ENST00000445647	NA	NA	NA	NA	XLOC_008633	NA	ENST00000445647	NA	NA	"BROAD Institute lincRNA (XLOC_008633), lincRNA [TCONS_00017872]"	chr10:119495835-119495894	hs|10q26.11	Agilent_HUMAN_G3V2	ENST00000445647	ENST00000445647	chr10	119495835	119495894	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_200_PI429285431	1.9763494	A	2.1501231	A	0.886520747230465	0	lncRNA	190-1_{1..481}	"transcript_id ""ENST00000420354.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420354.1"" | genecode_v17"	chr1	 30888672	 30889152	+	ENSG00000231949.1	ENST00000420354.1	RP4-591L5.2	RP4-591L5.2-001	NA	NA	NA	inter
CUST_5483_PI429285431	0.89786744	A	1.0303742	A	0.912244997751456	0	lncRNA	5417-1_{1..3000}	"transcript_id ""ENST00000604430.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604430.1"" | genecode_v17"	chr16	 29302541	 29305540	+	ENSG00000198106.7	ENST00000604430.1	SNX29P2	SNX29P2-001	LOC728888	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr16:29392710-29393431"	NA	inter
CUST_43285_PI429285431	3.3341274	P	2.685911	A	1.56722943606081	0	lncRNA	48103-1_{1..686}	ENST00000605082 havana:sense_intronic chromosome:GRCh37:4:185393078:185393763:-1 gene:ENSG00000270426 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000605082 havana:sense_intronic chromosome:GRCh37:4:185393078:185393763:-1 gene:ENSG00000270426 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr4	185393078	185393763	-	ENSG00000270426	ENST00000605082	NA	NA	IRF2	NA	chr4:185383078-185395726	inner
CUST_51082_PI429285431	1.4983256	A	0.9106645	A	1.50280841551132	0	lncRNA	54719-1_{1..858}	hg19_lincRNAsTranscripts_TCONS_l2_00007205 range=chr13:52743734-52750039 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007205 range=chr13:52743734-52750039 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 52743734	 52744591	-	NA	NA	NA	NA	NEK3	NA	chr13:52733734-52733996	inter
CUST_35808_PI429285431	1.1937699	A	1.0658903	A	1.09268654522691	0	lncRNA	37214-1_{1..3000}	n344484|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_32|NULL|-1.3225200|-0.2905349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344484|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_32|NULL|-1.3225200|-0.2905349	chr13	 32515444	 32518443	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39015_PI429285431	5.004734	P	5.001524	P	1.00222747960443	0	lncRNA	39994-1_{1..496}	n385335|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wqw.1||-0.9787600|-0.1509468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385335|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wqw.1||-0.9787600|-0.1509468	chr8	  6844699	  6845194	-	NA	NA	NA	NA	DEFA1B	NA	chr8:6854288-6856724	inter
LNCA_21_P0010313	7.0240684	P	7.538676	P	0.699983296032114	0	lncRNA	TCONS_00029224	NA	NA	NA	NA	XLOC_013949	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013949), lincRNA [TCONS_00029224]"	chr21:43137403-43137462	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029224	TCONS_00029224	chr21	 43137403	 43137462	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42420_PI429285431	0.9205071	A	0.92021704	A	1.00020107448396	0	lncRNA	45132-1_{1..76}	ENST00000391109 ncrna:snoRNA chromosome:GRCh37:10:29864235:29864310:1 gene:ENSG00000212411 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391109 ncrna:snoRNA chromosome:GRCh37:10:29864235:29864310:1 gene:ENSG00000212411 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	 29864235	 29864310	+	ENSG00000212411	ENST00000391109	NA	NA	SVIL	NA	chr10:29854235-29874310	inner
CUST_8728_PI429285431	0.9750008	A	0.91839695	A	1.04001464942155	0	lncRNA	10271-1_{1..2329}	lnc-PLCL2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLCL2-3:1	chr3	 18308510	 18310838	+	lnc-PLCL2-3	lnc-PLCL2-3:1	ENSG00000226472	ENST00000448265	NA	NA	NA	inner
CUST_22461_PI429285431	0.96722835	A	0.92766213	A	1.02780474666108	0	lncRNA	24049-1_{1..496}	lnc-NENF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NENF-1:1	chr1	212531258	212531753	+	lnc-NENF-1	lnc-NENF-1:1	ENSG00000229832.1	RP11-384C4.2	PPP2R5A	NA	chr1:212521258-212535205	inner
CUST_948_PI429285431	7.8769813	P	7.303566	P	1.48804205456044	0	lncRNA	938-1_{1..1096}	"transcript_id ""ENST00000409054.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000409054.1"" | genecode_v17"	chr2	 87754887	 87755982	+	ENSG00000222041.6	ENST00000409054.1	LINC00152	LINC00152-005	NA	NA	NA	inter
CUST_32001_PI429285431	9.198899	P	9.121873	P	1.05484132706435	0	lncRNA	33723-1_{1..1329}	n338562|CR602593|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|967|NULL|0.1922640|-0.4698279	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338562|CR602593|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|967|NULL|0.1922640|-0.4698279	chr1	234510107	234511435	+	NA	NA	NA	NA	TARBP1	NA	chr1:234527059-234530769	inner
CUST_38152_PI429285431	0.9224424	A	0.9813842	A	0.959967986485598	0	lncRNA	39225-1_{1..2575}	n381363|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001htg.1||0.3316680|-0.2567097	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381363|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001htg.1||0.3316680|-0.2567097	chr1	229050379	229052953	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00"	NA	inter
CUST_5992_PI429285431	0.9080601	A	0.913543	A	0.996206755919237	0	lncRNA	5918-1_{1..2281}	"transcript_id ""ENST00000593118.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593118.1"" | genecode_v17"	chr17	 75718954	 75721234	-	ENSG00000267790.1	ENST00000593118.1	RP11-316M20.1	RP11-316M20.1-001	LOC100132174	NA	chr17:75719694-75720167	inter
CUST_4433_PI429285431	0.9890221	A	1.581016	A	0.663425375386364	0	lncRNA	4383-1_{1..570}	"transcript_id ""ENST00000544515.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544515.1"" | genecode_v17"	chr12	119287159	119287728	-	ENSG00000256149.1	ENST00000544515.1	RP11-357K6.3	RP11-357K6.3-001	NA	NA	NA	inter
CUST_44026_PI429285431	0.9687046	A	0.96345556	A	1.003644984133	0	lncRNA	48710-1_{1..2745}	"gi|388490284|ref|NR_049778.1| Homo sapiens zinc finger protein 385B (ZNF385B), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388490284|ref|NR_049778.1| Homo sapiens zinc finger protein 385B (ZNF385B), transcript variant 4, non-coding RNA"	Chr2	180306709	180309453	-	151126	NR_049778.1	NA	NA	NA	NA	NA	inter
CUST_26894_PI429285431	1.3636887	A	1.2749461	A	1.06344292064451	0	lncRNA	28411-1_{1..2627}	n323969|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054147|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054147|-0.9639340|-0.3617462	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323969|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054147|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054147|-0.9639340|-0.3617462	chr9	129026710	129029336	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41658_PI429285431	4.115904	P	4.264335	P	0.902231148857505	0	lncRNA	43075-1_{1..91}	ENST00000459007 ncrna:miRNA chromosome:GRCh37:6:98472407:98472497:1 gene:ENSG00000238367 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459007 ncrna:miRNA chromosome:GRCh37:6:98472407:98472497:1 gene:ENSG00000238367 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 98472407	 98472497	+	ENSG00000238367	ENST00000459007	NA	NA	NA	NA	NA	inter
CUST_21635_PI429285431	0.9150491	A	1.1983515	A	0.821707932926585	0	lncRNA	23247-1_{1..591}	lnc-RGS5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RGS5-1:3	chr1	163291412	163292002	-	lnc-RGS5-1	lnc-RGS5-1:3	ENSG00000232995.2	RP11-267N12.3	NUF2	NA	chr1:163291723-163301577	inner
LNCA_21_P0008525	2.21256	A	2.3567762	A	0.904870850205497	0	lncRNA	TCONS_00023051	NA	NA	NA	NA	XLOC_010932	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010932), lincRNA [TCONS_00023051]"	chr14:101364018-101364077	hs|14q32.2	Agilent_HUMAN_G3V2	TCONS_00023051	TCONS_00023051	chr14	101364018	101364077	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44193_PI429285431	1.4501339	A	1.2080212	A	1.18272338825127	0	lncRNA	48850-1_{1..733}	"gi|397139031|ref|XR_158988.1| PREDICTED: Homo sapiens uncharacterized LOC100996321 (LOC100996321), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139031|ref|XR_158988.1| PREDICTED: Homo sapiens uncharacterized LOC100996321 (LOC100996321), misc_RNA"	NA	NA	NA	NA	NA	XR_158988.1	NA	NA	NA	NA	NA	Unknown
CUST_1557_PI429285431	3.4057264	P	3.632608	P	0.854479864000776	0	lncRNA	1544-1_{1..328}	"transcript_id ""ENST00000441185.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441185.2"" | genecode_v17"	chr3	172278678	172279005	-	ENSG00000223387.2	ENST00000441185.2	RP11-408H1.3	RP11-408H1.3-004	NA	NA	NA	inter
CUST_23625_PI429285431	0.91505027	A	0.92030257	A	0.99636600207452	0	lncRNA	25192-1_{1..3000}	lnc-HERC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-HERC3-1:1	chr4	 89648986	 89651985	+	lnc-HERC3-1	lnc-HERC3-1:1	ENSG00000248019.2	FAM13A-AS1	FAM13A	"hg19_refFlat_FAM13A:range=chr4:89649684-897441555'pad=0,hg19_refFlat_FAM13A:range=chr4:89649684-897441555'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_FAM13A:range=chr4:89649684-899781155'pad=0,hg19_refFlat_FAM13A:range=chr4:89649684-899781155'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr4:89647106-89661254"	NA	inner
LNCA_21_P0011095	4.730794	P	4.946568	P	0.861084067680704	0	lncRNA	TCONS_l2_00006273	NA	NA	NA	NA	XLOC_l2_003391	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003391), lincRNA [TCONS_l2_00006273]"	chr12:56849560-56849501	hs|12q13.3	Agilent_HUMAN_G3V2	TCONS_l2_00006273	TCONS_l2_00006273	chr12	 56849501	 56849560	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00316557	0.9147245	A	0.9164018	A	0.998838059809919	0	lncRNA	TCONS_00009085	NA	NA	NA	NA	XLOC_004016	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004016), lincRNA [TCONS_00009085]"	chr4:90472335-90472276	hs|4q22.1	Agilent_HUMAN_G3V2	TCONS_00009085	TCONS_00009085	chr4	 90472276	 90472335	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24898_PI429285431	3.2782614	P	3.9263186	P	0.638139082962591	0	lncRNA	26439-1_{1..381}	lnc-CTAGE1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTAGE1-1:2	chr18	 20366713	 20367093	-	lnc-CTAGE1-1	lnc-CTAGE1-1:2	ENSG00000266850.1	RP11-370A5.1	NA	NA	NA	inter
CUST_15047_PI429285431	1.330708	A	1.9691548	A	0.642404186529345	0	lncRNA	16710-1_{1..253}	lnc-C17orf58-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C17orf58-5:1	chr17	 65761725	 65761977	-	lnc-C17orf58-5	lnc-C17orf58-5:1	XLOC_012554	linc-PSMD12	NA	NA	NA	inter
CUST_10425_PI429285431	6.03828	P	6.3892713	P	0.784045182152238	0	lncRNA	11953-1_{1..2755}	lnc-BCL11A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BCL11A-2:1	chr2	 60627568	 60630322	-	lnc-BCL11A-2	lnc-BCL11A-2:1	XLOC_002108	linc-FANCL-6	NA	NA	NA	inter
CUST_36257_PI429285431	0.91507274	A	1.1066486	A	0.875648725090532	0	lncRNA	37499-1_{1..3000}	n344792|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_341|NULL|-1.3287300|-0.2615506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344792|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_341|NULL|-1.3287300|-0.2615506	chr7	 22551433	 22554432	+	NA	NA	NA	NA	NA	"hg19_refFlat_EEF1A1:range=chr6:74227533-742297495'pad=0,hg19_refFlat_EEF1A1:range=chr6:74227533-742297495'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_EEF1A2:range=chr20:62119651-621291165'pad=0,hg19_refFlat_EEF1A2:range=chr20:62119651-621291165'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	inter
CUST_39714_PI429285431	0.91302407	A	0.92036295	A	0.994925992506314	0	lncRNA	40649-1_{1..3000}	n405626|NR_002789|lncRNA|Homosapiens||RefGeneNoncode|NR_002789||3.3045700|-0.3419804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405626|NR_002789|lncRNA|Homosapiens||RefGeneNoncode|NR_002789||3.3045700|-0.3419804	chr7	 64310070	 64313069	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31148_PI429285431	1.5676465	A	2.0866187	A	0.697868829509082	0	lncRNA	32943-1_{1..300}	n337477|EF100451|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394866|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394866|-1.0947300|-0.2257600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337477|EF100451|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394866|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394866|-1.0947300|-0.2257600	chr6	144263761	144264060	-	NA	NA	NA	NA	PLAGL1	NA	chr6:144261437-144339255	inner
CUST_27027_PI429285431	0.915728	A	0.909961	A	1.00400537996925	0	lncRNA	28557-1_{1..1144}	n324132|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001049|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001049|-1.1765500|-0.3044624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324132|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001049|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001049|-1.1765500|-0.3044624	chr9	 33709687	 33710830	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10905_PI429285431	0.9126718	A	1.2970047	A	0.766133175474441	0	lncRNA	12449-1_{1..1210}	lnc-SLFN5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLFN5-1:2	chr17	 33651673	 33652882	+	lnc-SLFN5-1	lnc-SLFN5-1:2	XLOC_012177	linc-AP2B1-2	NA	NA	NA	inter
CUST_23372_PI429285431	0.92449933	A	0.9198111	A	1.00325491918902	0	lncRNA	24940-1_{1..1100}	lnc-OCA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OCA2-2:1	chr15	 27786259	 27787358	-	lnc-OCA2-2	lnc-OCA2-2:1	ENSG00000259168.1	RP11-100M12.3	GABRG3	NA	chr15:27776259-27778373	inter
CUST_47176_PI429285431	8.375043	P	8.352448	P	1.0157849471336	0	lncRNA	51253-1_{1..2017}	"gi|210147553|ref|NR_024330.1| Homo sapiens long intergenic non-protein coding RNA 85 (LINC00085), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|210147553|ref|NR_024330.1| Homo sapiens long intergenic non-protein coding RNA 85 (LINC00085), non-coding RNA"	Chr19	 52196593	 52198609	+	147650	NR_024330.1	NA	NA	NA	NA	NA	inter
CUST_8084_PI429285431	3.4803538	P	4.6713815	P	0.437990747952989	0	lncRNA	9690-1_{1..824}	lnc-RRP36-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RRP36-1:1	chr6	 42998360	 42999183	+	lnc-RRP36-1	lnc-RRP36-1:1	ENSG00000249374	ENST00000232863	RRP36	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.91;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40chr6:42989385-42997337"	NA	inter
CUST_45305_PI429285431	5.386191	P	2.6663225	A	6.58812761048899	0	lncRNA	49747-3_{6001..7689}	"gi|408684415|ref|NR_073201.1| Homo sapiens DENN/MADD domain containing 4C (DENND4C), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|408684415|ref|NR_073201.1| Homo sapiens DENN/MADD domain containing 4C (DENND4C), transcript variant 2, non-coding RNA"	Chr9	 19236763	 19238451	+	55667	NR_073201.2	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_16570_PI429285431	0.9064426	A	0.90663815	A	0.999864464254641	0	lncRNA	18271-1_{1..1109}	lnc-DFNA5-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DFNA5-3:1	chr7	 24222497	 24223605	-	lnc-DFNA5-3	lnc-DFNA5-3:1	XLOC_006376	linc-TRA2A-3	NA	NA	NA	inter
CUST_30899_PI429285431	0.9827725	A	0.98752296	A	0.996712647259728	0	lncRNA	32687-1_{1..299}	n336930|AY962468|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000333391|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000333391|-1.0220900|-0.5790584	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336930|AY962468|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000333391|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000333391|-1.0220900|-0.5790584	chr10	 80486248	 80486546	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25398_PI429285431	0.9046359	A	0.90117556	A	1.0024014036768	0	lncRNA	26929-1_{1..673}	lnc-TCL1B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCL1B-2:1	chr14	 96221582	 96222254	+	lnc-TCL1B-2	lnc-TCL1B-2:1	ENSG00000257275.2	RP11-164H13.1	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TCL1A:range=chr14:96178092-961804035'pad=0,hg19_refFlat_TCL1A:range=chr14:96178092-961804035'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30"	NA	inter
CUST_46230_PI429285431	1.3407547	A	1.2816083	A	1.04184914710672	0	lncRNA	50469-1_{1..2394}	"gi|397139502|ref|XR_159013.1| PREDICTED: Homo sapiens transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 2 (TPTE2P2), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139502|ref|XR_159013.1| PREDICTED: Homo sapiens transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 2 (TPTE2P2), misc_RNA"	Chr13	 52793490	 52795883	-	644623	XR_159013.2	NA	NA	NA	NA	NA	inter
CUST_19106_PI429285431	8.264587	P	8.1459465	P	1.08571127811427	0	lncRNA	20793-1_{1..587}	lnc-MSH3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MSH3-1:1	chr5	 79950178	 79950764	+	lnc-MSH3-1	lnc-MSH3-1:1	DHFR	;	MSH3	"hg19_refFlat_DHFRL1:range=chr3:93779792-937803555'pad=0,hg19_refFlat_DHFRL1:range=chr3:93779792-937803555'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_DHFR:range=chr5:79924906-799503085'pad=0,hg19_refFlat_DHFR:range=chr5:79924906-799503085'pad=0 3'pad=0 strand=- repeatMasking=none,-97.70chr5:79950294-79960765"	NA	inner
CUST_36369_PI429285431	0.9181464	A	0.9126191	A	1.00383858096368	0	lncRNA	37589-1_{1..839}	n344886|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_435|NULL|-1.3161100|-0.1929737	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344886|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_435|NULL|-1.3161100|-0.1929737	chr6	  5901435	  5902273	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35293_PI429285431	2.0133672	A	1.502327	A	1.42507732268635	0	lncRNA	36696-1_{1..2537}	n342313|AK130505|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4805|NULL|0.0301584|-0.3429569	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342313|AK130505|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4805|NULL|0.0301584|-0.3429569	chr14	 36263046	 36265582	-	NA	NA	NA	NA	RALGAPA1	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10chr14:36253046-36275529"	NA	inner
CUST_17895_PI429285431	1.5465444	A	1.3068333	A	1.18075619106612	0	lncRNA	19628-1_{1..838}	lnc-C1D-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1D-3:1	chr2	 67442360	 67443197	-	lnc-C1D-3	lnc-C1D-3:1	XLOC_002142	linc-SPRED2-11	NA	NA	NA	inter
CUST_6459_PI429285431	4.1466618	P	4.6886044	P	0.68684544344919	0	lncRNA	6400-1_{1..407}	"transcript_id ""ENST00000592668.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592668.1"" | genecode_v17"	chr19	 32595443	 32595849	+	ENSG00000267133.1	ENST00000592668.1	AC011518.2	AC011518.2-002	NA	NA	NA	inter
LNCA_33_P3241771	6.715819	P	6.7416644	P	0.982244847525982	0	lncRNA	XR_109230	XR_109230	XR_109230	   440313	Hs.534903	LOC440313	uncharacterized LOC440313	NA	THC2487607	NA	"PREDICTED: Homo sapiens hypothetical LOC440313 (LOC440313), miscRNA [XR_109230]"	chr15:101324317-101324258	hs|15q26.3	Agilent_HUMAN_G3V2	XR_109230	XR_109230	chr15	101324258	101324317	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40289_PI429285431	3.7699547	P	3.049212	P	1.64803022282863	0	lncRNA	41094-1_{1..3000}	n408238|NR_028402|lncRNA|Homosapiens||RefGeneNoncode|NR_028402||11.8013000|-0.2415566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408238|NR_028402|lncRNA|Homosapiens||RefGeneNoncode|NR_028402||11.8013000|-0.2415566	chr20	 18125742	 18128741	+	NA	NA	NA	NA	PET117	NA	chr20:18118499-18123813	inter
CUST_18118_PI429285431	4.464176	P	4.2400236	P	1.16809078010188	0	lncRNA	19851-2_{3001..4004}	lnc-CD47-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD47-1:2	chr3	107757645	107758648	-	lnc-CD47-1	lnc-CD47-1:2	XLOC_003209	linc-CBLB-8	CD47	NA	chr3:107761941-107767940	inter
CUST_28853_PI429285431	1.6025385	A	0.9411662	A	1.58158632265307	0	lncRNA	30561-1_{1..354}	n326268|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098769|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098769|-1.2301400|-0.3350709	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326268|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098769|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098769|-1.2301400|-0.3350709	chr1	201523520	201523873	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002383	0.9322698	A	0.91665363	A	1.01088309893327	0	lncRNA	TCONS_00004101	NA	NA	NA	NA	XLOC_001954	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001954), lincRNA [TCONS_00004101]"	chr2:4005107-4005048	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00004101	TCONS_00004101	chr2	  4005048	  4005107	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17989_PI429285431	4.4351645	P	4.6668572	P	0.851635090220917	0	lncRNA	19722-1_{1..548}	lnc-C5orf38-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf38-3:1	chr5	  2965042	  2965589	+	lnc-C5orf38-3	lnc-C5orf38-3:1	XLOC_004257	linc-IRX1-7	NA	NA	NA	inter
CUST_40556_PI429285431	3.8198688	P	3.4029922	P	1.33503410712142	0	lncRNA	41314-1_{1..2316}	n409729|NR_034130|lncRNA|Homosapiens||RefGeneNoncode|NR_034130||-0.9867520|-0.1583779	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409729|NR_034130|lncRNA|Homosapiens||RefGeneNoncode|NR_034130||-0.9867520|-0.1583779	chr2	114735245	114737560	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12183_PI429285431	2.161725	A	2.0053103	A	1.11451396974249	0	lncRNA	13783-1_{1..373}	lnc-GFRA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GFRA2-1:1	chr8	 21266930	 21267302	-	lnc-GFRA2-1	lnc-GFRA2-1:1	XLOC_007020	linc-LZTS1-1	NA	NA	NA	inter
CUST_4838_PI429285431	1.7453216	A	0.9067738	A	1.78824920481617	0	lncRNA	4781-1_{1..684}	"transcript_id ""ENST00000602485.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602485.1"" | genecode_v17"	chr14	 57266623	 57267306	-	ENSG00000270163.1	ENST00000602485.1	RP11-1085N6.6	RP11-1085N6.6-001	OTX2	NA	chr14:57267425-57277184	inter
CUST_40013_PI429285431	8.301825	P	7.7549458	P	1.46092204723725	0	lncRNA	40874-1_{1..2412}	n407162|NR_026580|lncRNA|Homosapiens||RefGeneNoncode|NR_026580||6.5047800|-0.2190033	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407162|NR_026580|lncRNA|Homosapiens||RefGeneNoncode|NR_026580||6.5047800|-0.2190033	chr13	114239002	114241413	+	NA	NA	NA	NA	TFDP1	NA	chr13:114239003-114295788	inner
CUST_29677_PI429285431	3.4905221	P	2.593594	A	1.8620968355023	0	lncRNA	31439-1_{1..315}	n333323|AY219703|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085334|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085334|-0.9932150|-0.3266330	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333323|AY219703|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085334|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085334|-0.9932150|-0.3266330	chr7	136553984	136554298	+	NA	NA	NA	NA	CHRM2	NA	chr7:136553399-136701771	inter
CUST_49416_PI429285431	0.91530395	A	0.9146953	A	1.00042197303703	0	lncRNA	53221-1_{1..2218}	hg19_lincRNAsTranscripts_TCONS_l2_00023265 range=chr5:175598867-175603580 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023265 range=chr5:175598867-175603580 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175598867	175601084	-	NA	NA	NA	NA	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.76;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
LNCA_21_P0002119	0.9266992	A	0.9109448	A	1.01097996005863	0	lncRNA	AK057534	NA	AK057534	NA	Hs.516528	XLOC_002400	NA	ENST00000416004	THC2618807	NA	"BROAD Institute lincRNA (XLOC_002400), lincRNA [TCONS_00003441]"	chr2:175647867-175647808	hs|2q31.1	Agilent_HUMAN_G3V2	AK057534	AK057534	chr2	175647808	175647867	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32097_PI429285431	2.588624	A	2.1446035	A	1.36039018275632	0	lncRNA	33802-1_{1..1309}	n338660|BC009884|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1074|NULL|-0.7274820|-0.1576303	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338660|BC009884|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1074|NULL|-0.7274820|-0.1576303	chr2	 10161704	 10163012	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14088_PI429285431	0.94940346	A	0.9136433	A	1.02509680709848	0	lncRNA	15733-1_{1..1400}	lnc-P2RX7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-P2RX7-2:1	chr12	121557252	121558651	+	lnc-P2RX7-2	lnc-P2RX7-2:1	XLOC_009912	linc-P2RX7	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30"	NA	inter
LNCA_21_P0001367	4.532065	P	4.561473	P	0.979822278447699	0	lncRNA	TCONS_00001117	NA	NA	NA	NA	XLOC_000367	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000367), lincRNA [TCONS_00001117]"	chr1:118749565-118749624	hs|1p12	Agilent_HUMAN_G3V2	TCONS_00001117	TCONS_00001117	chr1	118749565	118749624	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35541_PI429285431	7.506578	P	5.861307	P	3.12806610229504	0	lncRNA	36956-2_{3001..4524}	n342663|BC028585|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5165|NULL|0.9446330|-0.4096806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n342663|BC028585|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5165|NULL|0.9446330|-0.4096806	chr5	 82351664	 82353187	-	NA	NA	NA	NA	XRCC4	NA	chr5:82373317-82383191	inner
CUST_35518_PI429285431	2.5129442	A	1.4926571	A	2.02832256079295	0	lncRNA	36925-1_{1..3000}	n342623|D90348|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5125|NULL|4.3886300|-0.2427078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342623|D90348|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5125|NULL|4.3886300|-0.2427078	chr4	148402129	148405128	+	NA	NA	NA	NA	EDNRA	NA	chr4:148392129-148466106	inter
CUST_3247_PI429285431	5.948521	P	6.1545305	P	0.866931854837868	0	lncRNA	3226-1_{1..579}	"transcript_id ""ENST00000522947.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522947.1"" | genecode_v17"	chr8	101441122	101441700	-	ENSG00000253842.1	ENST00000522947.1	KB-173C10.1	KB-173C10.1-001	NA	NA	NA	inter
CUST_21669_PI429285431	4.514796	P	4.321781	P	1.14315022092254	0	lncRNA	23279-1_{1..433}	lnc-IKZF2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IKZF2-4:1	chr2	213886189	213886621	-	lnc-IKZF2-4	lnc-IKZF2-4:1	ENSG00000225332.2	AC093865.1	IKZF2	NA	chr2:213876189-213896269	inner
CUST_12727_PI429285431	6.654054	P	6.3806777	P	1.20863305159086	0	lncRNA	14347-1_{1..228}	lnc-SMARCA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMARCA2-2:1	chr9	  1929409	  1929636	+	lnc-SMARCA2-2	lnc-SMARCA2-2:1	XLOC_007264	linc-SMARCA2-2	NA	NA	NA	inter
LNCA_21_P0007035	5.185388	P	4.936797	P	1.18804624952892	0	lncRNA	TCONS_00018646	NA	NA	NA	NA	XLOC_008997	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008997), lincRNA [TCONS_00018646]"	chr10:132608062-132608003	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_00018646	TCONS_00018646	chr10	132608003	132608062	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15780_PI429285431	0.9075377	A	0.8985751	A	1.00623173790538	0	lncRNA	17470-1_{1..845}	lnc-RAD23B-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAD23B-6:1	chr9	110338188	110339032	+	lnc-RAD23B-6	lnc-RAD23B-6:1	XLOC_007508	linc-ACTL7A-8	NA	NA	NA	inter
CUST_49952_PI429285431	8.551588	P	9.047176	P	0.709272540588314	0	lncRNA	53702-1_{1..526}	hg19_lincRNAsTranscripts_TCONS_l2_00026884 range=chr7:128552675-128553989 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026884 range=chr7:128552675-128553989 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	128552675	128553200	-	NA	NA	NA	NA	KCP	NA	chr7:128542675-128550773	inter
CUST_3155_PI429285431	0.9251863	A	0.9128245	A	1.00860536188935	0	lncRNA	3134-1_{1..607}	"transcript_id ""ENST00000517899.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517899.1"" | genecode_v17"	chr8	 64382886	 64383492	+	ENSG00000253894.1	ENST00000517899.1	RP11-45K10.2	RP11-45K10.2-002	NA	NA	NA	inter
CUST_8029_PI429285431	0.90092623	A	0.8945306	A	1.0044429536838	0	lncRNA	9638-1_{1..569}	lnc-PRKD1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PRKD1-3:2	chr14	 29850387	 29850955	-	lnc-PRKD1-3	lnc-PRKD1-3:2	ENSG00000257522	RP11-562L8.1	NA	NA	NA	inter
CUST_43499_PI429285431	0.90809757	A	0.9097057	A	0.998885950239231	0	lncRNA	48291-1_{1..1553}	"gi|157412274|ref|NR_003927.1| Homo sapiens urate oxidase, pseudogene (UOX), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|157412274|ref|NR_003927.1| Homo sapiens urate oxidase, pseudogene (UOX), non-coding RNA"	Chr1	 84830641	 84832193	-	391051	NR_003927.1	NA	NA	NA	NA	NA	inter
CUST_13069_PI429285431	2.2895803	A	1.7006128	A	1.50416986614621	0	lncRNA	14696-1_{1..1005}	lnc-RP11-680F20.4.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-680F20.4.1-2:1	chr11	125808581	125809585	-	lnc-RP11-680F20.4.1-2	lnc-RP11-680F20.4.1-2:1	XLOC_009595	linc-PUS3-1	LOC338667	NA	chr11:125817319-125819290	inter
CUST_3212_PI429285431	2.571102	A	2.8094826	A	0.847696302830285	0	lncRNA	3191-1_{1..814}	"transcript_id ""ENST00000522123.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522123.1"" | genecode_v17"	chr8	 83775014	 83775827	-	ENSG00000253836.1	ENST00000522123.1	RP11-731N10.1	RP11-731N10.1-001	NA	NA	NA	inter
LNCA_21_P0004544	0.92068374	A	0.9067623	A	1.00969631445754	0	lncRNA	TCONS_00010853	NA	NA	NA	NA	XLOC_004670	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004670), lincRNA [TCONS_00010853]"	chr5:177389894-177389953	hs|5q35.3	Agilent_HUMAN_G3V2	TCONS_00010853	TCONS_00010853	chr5	177389894	177389953	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3922_PI429285431	0.9194766	A	1.5276798	A	0.656013222961601	0	lncRNA	3892-1_{1..270}	"transcript_id ""ENST00000526455.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526455.1"" | genecode_v17"	chr11	 41898184	 41898453	+	ENSG00000254822.1	ENST00000526455.1	RP11-375D13.3	RP11-375D13.3-001	NA	NA	NA	inter
CUST_48975_PI429285431	2.889264	A	3.4063735	P	0.698770447503933	0	lncRNA	52814-1_{1..436}	hg19_lincRNAsTranscripts_TCONS_l2_00019078 range=chr3:194466287-194470700 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019078 range=chr3:194466287-194470700 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	194466287	194466722	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4156_PI429285431	3.821691	P	4.5268054	P	0.613393846996917	0	lncRNA	4114-1_{1..603}	"transcript_id ""ENST00000535746.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535746.1"" | genecode_v17"	chr12	  8474472	  8475074	+	ENSG00000256101.1	ENST00000535746.1	RP11-90D4.3	RP11-90D4.3-002	NA	NA	NA	inter
CUST_33451_PI429285431	7.1615014	P	7.1002903	P	1.04334124756837	0	lncRNA	35028-1_{1..3000}	n340186|AK127031|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2647|NULL|-1.0542600|-0.3510595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340186|AK127031|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2647|NULL|-1.0542600|-0.3510595	chr4	 99580054	 99583053	+	NA	NA	NA	NA	TSPAN5	NA	chr4:99570054-99579812	inter
LNCA_21_P0007015	4.7869377	P	4.7031593	P	1.059789985653	0	lncRNA	TCONS_00018595	NA	NA	NA	NA	XLOC_008935	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008935), lincRNA [TCONS_00018595]"	chr10:105725560-105725501	hs|10q24.33	Agilent_HUMAN_G3V2	TCONS_00018595	TCONS_00018595	chr10	105725501	105725560	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51693_PI429285431	4.5972853	P	4.909662	P	0.805313989231826	0	lncRNA	55255-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00011027 range=chr17:81054544-81060433 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011027 range=chr17:81054544-81060433 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 81054544	 81057543	+	NA	NA	NA	NA	METRNL	NA	chr17:81044544-81052592	inter
CUST_31167_PI429285431	1.9295336	A	2.2807314	A	0.783932965960369	0	lncRNA	32962-1_{1..288}	n337584|M13304|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000397419|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000397419|1.8223000|-0.1618219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337584|M13304|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000397419|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000397419|1.8223000|-0.1618219	chrX	153420160	153420447	+	NA	NA	NA	NA	OPN1LW	NA	chrX:153410160-153424507	inner
CUST_43002_PI429285431	7.6023107	P	7.4581294	P	1.10510335174229	0	lncRNA	46169-1_{1..64}	ENST00000365223 ncrna:snoRNA chromosome:GRCh37:18:47015615:47015678:-1 gene:ENSG00000202093 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365223 ncrna:snoRNA chromosome:GRCh37:18:47015615:47015678:-1 gene:ENSG00000202093 gene_biotype:snoRNA transcript_biotype:snoRNA	chr18	 47015615	 47015678	-	ENSG00000202093	ENST00000365223	NA	NA	RPL17-C18ORF32	NA	chr18:47007548-47018935	inter
CUST_44864_PI429285431	4.50383	P	4.2188606	P	1.2183844210975	0	lncRNA	49388-2_{3001..5822}	"gi|224967046|ref|NR_027329.1| Homo sapiens uncharacterized LOC114796 (KIAA1908), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224967046|ref|NR_027329.1| Homo sapiens uncharacterized LOC114796 (KIAA1908), transcript variant 1, non-coding RNA"	Chr7	  1612709	  1615530	+	114796	NR_027329.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0013254	6.389331	P	6.527939	P	0.908395207610075	0	lncRNA	ENST00000418395	NA	NA	NA	NA	XLOC_l2_013506	NA	ENST00000418395	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013506), lincRNA [TCONS_l2_00026092]"	chr7:91143145-91144210	hs|7q21.2	Agilent_HUMAN_G3V2	ENST00000418395	ENST00000418395	chr7	 91143145	 91144210	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23385_PI429285431	5.8615255	P	5.9371743	P	0.948915284595969	0	lncRNA	24953-1_{1..362}	lnc-EPCAM-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EPCAM-3:2	chr2	 47762011	 47762372	+	lnc-EPCAM-3	lnc-EPCAM-3:2	ENSG00000235760.3	AC138655.4	KCNK12	NA	chr2:47752011-47772338	inner
CUST_14491_PI429285431	0.922827	A	0.9180883	A	1.00329001680842	0	lncRNA	16157-1_{1..383}	lnc-CD2AP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD2AP-2:1	chr6	 47280145	 47280527	+	lnc-CD2AP-2	lnc-CD2AP-2:1	XLOC_005309	linc-CD2AP-2	TNFRSF21	NA	chr6:47270145-47277680	inter
CUST_30387_PI429285431	9.8441515	P	8.750254	P	2.13449901968989	0	lncRNA	32167-1_{1..675}	n335504|BC057832|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259769|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259769|2.2680700|-0.1833021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335504|BC057832|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259769|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259769|2.2680700|-0.1833021	chr10	 65281168	 65281842	+	NA	NA	NA	NA	REEP3	NA	chr10:65281123-65380072	inner
CUST_31745_PI429285431	9.876197	P	10.389944	P	0.700400976357797	0	lncRNA	33487-1_{1..3000}	n338283|AK125037|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|676|NULL|2.4824300|-0.1332547	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338283|AK125037|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|676|NULL|2.4824300|-0.1332547	chr19	  7597615	  7600614	-	NA	NA	NA	NA	PNPLA6	"hg19_refFlat_PNPLA6:range=chr19:7600437-76264485'pad=0,hg19_refFlat_PNPLA6:range=chr19:7600437-76264485'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.60;hg19_refFlat_PNPLA7:range=chr9:140354845-1404446495'pad=0,hg19_refFlat_PNPLA7:range=chr9:140354845-1404446495'pad=0 3'pad=0 strand=- repeatMasking=none,-60.70;hg19_refFlat_MCOLN1:range=chr19:7587637-75986815'pad=0,hg19_refFlat_MCOLN1:range=chr19:7587637-75986815'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.20;hg19_refFlat_PNPLA6:range=chr19:7600675-76264485'pad=0,hg19_refFlat_PNPLA6:range=chr19:7600675-76264485'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.30chr19:7599038-7611370"	NA	inner
CUST_2557_PI429285431	3.3689477	P	3.8555863	P	0.713686011234177	0	lncRNA	2545-1_{1..587}	"transcript_id ""ENST00000436672.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000436672.1"" | genecode_v17"	chr6	 75303895	 75304481	-	ENSG00000238052.2	ENST00000436672.1	RP11-554D15.5	RP11-554D15.5-001	NA	NA	NA	inter
CUST_30293_PI429285431	2.8050888	A	2.613772	A	1.14180540753847	0	lncRNA	32069-1_{1..1241}	n335193|AY449385|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254734|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254734|4.1654500|-0.1050222	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335193|AY449385|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254734|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254734|4.1654500|-0.1050222	chr1	 25599039	 25600279	+	NA	NA	NA	NA	RHD	NA	chr1:25598981-25656936	inner
CUST_4713_PI429285431	2.5628135	A	2.7549953	A	0.875281024943561	0	lncRNA	4660-1_{1..3000}	"transcript_id ""ENST00000418499.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418499.3"" | genecode_v17"	chr14	 19650037	 19653036	+	ENSG00000225210.5	ENST00000418499.3	AL589743.1	AL589743.1-003	NA	NA	NA	inter
CUST_32559_PI429285431	3.0433025	A	3.2569156	A	0.862374784509929	0	lncRNA	34223-1_{1..1227}	n339175|BC021684|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1606|NULL|-1.2324800|-0.3622055	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339175|BC021684|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1606|NULL|-1.2324800|-0.3622055	chr2	235131957	235133183	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35318_PI429285431	6.47666	P	6.8139563	P	0.791523286512188	0	lncRNA	36725-1_{1..3000}	n342350|AK126236|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4842|NULL|-0.8124410|-0.2853588	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342350|AK126236|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4842|NULL|-0.8124410|-0.2853588	chr19	 22703796	 22706795	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40392_PI429285431	1.0573087	A	1.0208472	A	1.02559526044641	0	lncRNA	41184-1_{1..3000}	n409250|NR_033417|lncRNA|Homosapiens||RefGeneNoncode|NR_033417||2.3534800|-0.3260915	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n409250|NR_033417|lncRNA|Homosapiens||RefGeneNoncode|NR_033417||2.3534800|-0.3260915	chr5	 69711196	 69714195	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-23.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-31.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90"	NA	inter
CUST_45207_PI429285431	1.1039304	A	1.3865582	A	0.822092251009219	0	lncRNA	49670-1_{1..2715}	"gi|168823566|ref|NR_015374.1| Homo sapiens uncharacterized LOC401463 (LOC401463), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|168823566|ref|NR_015374.1| Homo sapiens uncharacterized LOC401463 (LOC401463), non-coding RNA"	NA	NA	NA	NA	NA	NR_015374.1	NA	NA	NA	NA	NA	Unknown
CUST_3656_PI429285431	5.3430915	P	5.5745535	P	0.851771285272141	0	lncRNA	3625-1_{1..398}	"transcript_id ""ENST00000426283.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426283.1"" | genecode_v17"	chr10	 36727544	 36727941	+	ENSG00000237002.1	ENST00000426283.1	RP11-92J19.3	RP11-92J19.3-002	NA	NA	NA	inter
CUST_29129_PI429285431	1.6766104	A	2.6216292	A	0.519422782919705	0	lncRNA	30868-1_{1..471}	n326633|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000019595|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000019595|-1.1832700|-0.3562322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326633|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000019595|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000019595|-1.1832700|-0.3562322	chr1	 40907347	 40907817	-	NA	NA	NA	NA	ZNF643	NA	chr1:40916337-40929390	inner
CUST_44924_PI429285431	0.96281123	A	0.9269228	A	1.02518795249598	0	lncRNA	49439-2_{3001..3736}	"gi|330688438|ref|NR_038121.1| Homo sapiens engulfment and cell motility 1 (ELMO1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|330688438|ref|NR_038121.1| Homo sapiens engulfment and cell motility 1 (ELMO1), transcript variant 2, non-coding RNA"	Chr7	 36895511	 36896246	-	9844	NR_038121.1	NA	NA	NA	NA	NA	inter
CUST_39337_PI429285431	0.9230647	A	0.9271053	A	0.997203187888921	0	lncRNA	40304-1_{1..757}	n386399|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010jfh.1||-1.1592500|-0.2880465	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386399|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010jfh.1||-1.1592500|-0.2880465	chr5	139485048	139485804	-	NA	NA	NA	NA	PURA	NA	chr5:139493708-139497256	inter
CUST_23869_PI429285431	4.340213	P	4.601771	P	0.834186575299388	0	lncRNA	25429-1_{1..1338}	lnc-SEC14L1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC14L1-1:5	chr17	 75090152	 75091489	+	lnc-SEC14L1-1	lnc-SEC14L1-1:5	ENSG00000234912.3	LINC00338	SEC14L1	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30chr17:75084725-75101065"	NA	inner
CUST_14831_PI429285431	1.4049246	A	1.5901928	A	0.879485562534192	0	lncRNA	16492-1_{1..1264}	lnc-KATNAL1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KATNAL1-3:3	chr13	 30950964	 30952227	-	lnc-KATNAL1-3	lnc-KATNAL1-3:3	XLOC_010556	linc-KATNAL1-3	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30"	NA	inter
CUST_31313_PI429285431	6.9809513	P	7.146261	P	0.89173707174203	0	lncRNA	33096-1_{1..284}	n337779|AF022726|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|161|NULL|-0.7571050|-0.0335254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337779|AF022726|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|161|NULL|-0.7571050|-0.0335254	chr1	 25256227	 25256510	-	NA	NA	NA	NA	RUNX3	NA	chr1:25246227-25291501	inner
CUST_32689_PI429285431	3.7027926	P	3.4389553	P	1.20066801445885	0	lncRNA	34335-3_{6001..7442}	n339316|CR627169|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1748|NULL|-0.7688600|-0.1675337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339316|CR627169|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1748|NULL|-0.7688600|-0.1675337	chr16	 86121014	 86122455	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0,hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.00;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90"	NA	inter
CUST_12348_PI429285431	2.451149	A	3.42941	P	0.507591213083596	0	lncRNA	13960-1_{1..494}	lnc-RHOG-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RHOG-2:1	chr11	  3876587	  3877080	-	lnc-RHOG-2	lnc-RHOG-2:1	XLOC_009363	linc-RHOG	STIM1	NA	chr11:3876933-3886739	inter
CUST_2903_PI429285431	7.1779814	P	7.0658956	P	1.08078967688208	0	lncRNA	2884-1_{1..495}	"transcript_id ""ENST00000435466.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435466.1"" | genecode_v17"	chr7	110072296	110072790	-	ENSG00000226965.1	ENST00000435466.1	AC003088.1	AC003088.1-001	NA	NA	NA	inter
CUST_2179_PI429285431	1.7857361	A	1.9540702	A	0.889869632958485	0	lncRNA	2171-1_{1..566}	"transcript_id ""ENST00000514791.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514791.1"" | genecode_v17"	chr5	 67096568	 67097133	-	ENSG00000249894.1	ENST00000514791.1	RP11-434D9.2	RP11-434D9.2-001	NA	NA	NA	inter
CUST_9636_PI429285431	1.334899	A	1.0018365	A	1.25968455044001	0	lncRNA	11154-1_{1..577}	lnc-PCYOX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCYOX1-2:1	chr2	 70649535	 70650111	+	lnc-PCYOX1-2	lnc-PCYOX1-2:1	XLOC_001523	linc-VAX2-3	NA	NA	NA	inter
CUST_34805_PI429285431	3.7884943	P	3.8072774	P	0.987064933649704	0	lncRNA	36240-2_{3001..3677}	n341711|BX647080|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4183|NULL|-1.0089700|-0.3213459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341711|BX647080|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4183|NULL|-1.0089700|-0.3213459	chr9	 85885089	 85885765	+	NA	NA	NA	NA	FRMD3	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20chr9:85872089-85895748"	NA	inner
CUST_52114_PI429285431	0.95720404	A	0.9193867	A	1.02655956451422	0	lncRNA	55639-1_{1..778}	hg19_lincRNAsTranscripts_TCONS_l2_00017583 range=chr22:18958056-18982142 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017583 range=chr22:18958056-18982142 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 18958056	 18958833	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29858_PI429285431	6.5448112	P	6.1307364	P	1.33244390706551	0	lncRNA	31621-1_{1..777}	n333775|L16886|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192294|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192294|3.3111400|-0.3296640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333775|L16886|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192294|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192294|3.3111400|-0.3296640	chr5	 39383147	 39383923	-	NA	NA	NA	NA	DAB2	NA	chr5:39373147-39403457	inner
CUST_10593_PI429285431	5.66499	P	5.946209	P	0.82289542090388	0	lncRNA	12123-1_{1..428}	lnc-NDUFS6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDUFS6-1:1	chr5	  1851298	  1851725	+	lnc-NDUFS6-1	lnc-NDUFS6-1:1	XLOC_004248	linc-C5orf38-8	NA	NA	NA	inter
LNCA_21_P0008284	2.6221676	A	2.1985278	A	1.34130729671475	0	lncRNA	ENST00000502187	NA	AK091668	NA	Hs.651477	XLOC_011117	NA	ENST00000502187	NA	NA	"BROAD Institute lincRNA (XLOC_011117), lincRNA [TCONS_00022385]"	chr14:98424328-98424269	hs|14q32.2	Agilent_HUMAN_G3V2	ENST00000502187	ENST00000502187	chr14	 98424269	 98424328	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22882_PI429285431	0.91718364	A	0.91957104	A	0.998346548880095	0	lncRNA	24458-1_{1..516}	lnc-PRKACG-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRKACG-3:1	chr9	 71458083	 71458598	-	lnc-PRKACG-3	lnc-PRKACG-3:1	ENSG00000236733.1	RP11-203L2.4	PIP5K1B	NA	chr9:71448083-71468191	inner
CUST_34226_PI429285431	0.8959155	A	0.89845526	A	0.998241121160272	0	lncRNA	35736-1_{1..1195}	n341086|AL137429|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3552|NULL|-0.9358900|-0.3607254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341086|AL137429|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3552|NULL|-0.9358900|-0.3607254	chr11	 82959130	 82960324	-	NA	NA	NA	NA	ANKRD42	NA	chr11:82949130-82960013	inner
CUST_17725_PI429285431	3.656109	P	5.072871	P	0.374552017992358	0	lncRNA	19455-1_{1..2332}	lnc-ZNF85-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ZNF85-1:1	chr19	 21165698	 21168029	+	lnc-ZNF85-1	lnc-ZNF85-1:1	XLOC_013005	linc-ZNF430	ZNF430	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-29.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90chr19:21155698-21177734"	NA	inter
CUST_33945_PI429285431	1.7027675	A	3.3862107	A	0.311338695071444	0	lncRNA	35485-1_{1..1527}	n340745|BC041476|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3208|NULL|-0.6205520|-0.1370015	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340745|BC041476|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3208|NULL|-0.6205520|-0.1370015	chr17	 48633567	 48635093	-	NA	NA	NA	NA	SPATA20	NA	chr17:48624562-48633213	inter
CUST_12826_PI429285431	0.9238332	A	1.1665804	A	0.8451344623281	0	lncRNA	14453-1_{1..353}	lnc-WDR60-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR60-3:2	chr7	158775374	158775726	+	lnc-WDR60-3	lnc-WDR60-3:2	XLOC_006321	TCONS_00013660	NA	NA	NA	inter
CUST_26149_PI429285431	5.204764	P	6.11237	P	0.533068929275476	0	lncRNA	27660-1_{1..613}	lnc-FAM153C-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FAM153C-4:1	chr5	177384610	177385222	+	lnc-FAM153C-4	lnc-FAM153C-4:1	ENSG00000249684.1	RP11-423H2.3	NA	NA	NA	inter
CUST_13752_PI429285431	0.91407186	A	0.903474	A	1.00737292391955	0	lncRNA	15397-1_{1..665}	lnc-FAAH2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAAH2-2:1	chrX	 57153318	 57153982	+	lnc-FAAH2-2	lnc-FAAH2-2:1	XLOC_007996	linc-FAAH2-2	SPIN2B	NA	chrX:57146115-57147979	inter
CUST_50756_PI429285431	0.89648616	A	0.89911026	A	0.998182765656927	0	lncRNA	54420-1_{1..936}	hg19_lincRNAsTranscripts_TCONS_l2_00004705 range=chr11:88071175-88158232 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004705 range=chr11:88071175-88158232 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 88071175	 88072110	+	NA	NA	NA	NA	CTSC	NA	chr11:88061175-88070941	inter
CUST_50610_PI429285431	6.850057	P	6.874749	P	0.983030442656871	0	lncRNA	54295-1_{1..1971}	hg19_lincRNAsTranscripts_TCONS_l2_00002836 range=chr10:977936-988734 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002836 range=chr10:977936-988734 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	   977936	   979906	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50061_PI429285431	0.90225613	A	0.8965726	A	1.00394729291523	0	lncRNA	53794-2_{3001..5319}	hg19_lincRNAsTranscripts_TCONS_l2_00027781 range=chr8:58127214-58144454 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027781 range=chr8:58127214-58144454 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 58130214	 58132532	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13638_PI429285431	4.1710906	P	4.8280063	P	0.634232758263657	0	lncRNA	15277-2_{3001..6000}	lnc-ARFGEF2-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ARFGEF2-2:8	chr20	 47135445	 47138444	+	lnc-ARFGEF2-2	lnc-ARFGEF2-2:8	XLOC_013553	linc-ARFGEF2-2	NA	NA	NA	inter
CUST_35066_PI429285431	1.4621884	A	0.9055702	A	1.47081745193002	0	lncRNA	36476-1_{1..1587}	n342016|BC037811|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4497|NULL|0.0320960|-0.2349666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342016|BC037811|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4497|NULL|0.0320960|-0.2349666	chr12	109302139	109303725	-	NA	NA	NA	NA	SVOP	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30chr12:109304658-109313778"	NA	inter
CUST_48578_PI429285431	2.5102496	A	2.5428598	A	0.977649880748565	0	lncRNA	52426-1_{1..916}	hg19_lincRNAsTranscripts_TCONS_l2_00014410 range=chr2:8027458-8039813 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014410 range=chr2:8027458-8039813 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	  8027458	  8028373	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36208_PI429285431	4.999195	P	4.9071503	P	1.06587976043265	0	lncRNA	37464-1_{1..726}	n344753|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_302|NULL|-1.2951100|-0.1997202	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344753|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_302|NULL|-1.2951100|-0.1997202	chr1	200298332	200299057	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12574_PI429285431	5.213108	P	5.538629	P	0.79801014916362	0	lncRNA	14182-1_{1..478}	lnc-CDH16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH16-1:1	chr16	 66934496	 66934973	-	lnc-CDH16-1	lnc-CDH16-1:1	XLOC_011989	linc-NAE1-2	CDH16	NA	chr16:66942025-66944554	inter
CUST_8197_PI429285431	3.2799053	P	2.8647788	A	1.33341559000246	0	lncRNA	9794-1_{1..901}	lnc-AC073348.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC073348.1-2:1	chr7	112727500	112728400	+	lnc-AC073348.1-2	lnc-AC073348.1-2:1	ENSG00000247285	ENST00000501255	GPR85	"hg19_refFlat_GPR85:range=chr7:112723664-1127247765'pad=0,hg19_refFlat_GPR85:range=chr7:112723664-1127247765'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60chr7:112720468-112727833"	NA	inner
CUST_7717_PI429285431	12.913864	P	11.832504	P	2.11602988061569	0	lncRNA	9348-1_{1..542}	lnc-SERPINC1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:8	chr1	173837098	173837639	-	lnc-SERPINC1-1	lnc-SERPINC1-1:8	ENSG00000234741	GAS5	DARS2	NA	chr1:173827098-173827682	inter
CUST_11974_PI429285431	1.1173809	A	1.1159569	A	1.00098752887097	0	lncRNA	13554-1_{1..554}	lnc-RP11-80A15.1.1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-80A15.1.1-5:3	chr14	 25731966	 25732519	+	lnc-RP11-80A15.1.1-5	lnc-RP11-80A15.1.1-5:3	XLOC_010775	linc-FOXG1-6	NA	NA	NA	inter
CUST_11488_PI429285431	1.628577	A	1.3944314	A	1.17620995003165	0	lncRNA	13056-1_{1..557}	lnc-ZNF804A-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ZNF804A-1:4	chr2	186084780	186085336	+	lnc-ZNF804A-1	lnc-ZNF804A-1:4	XLOC_001780	linc-FSIP2	NA	NA	NA	inter
CUST_4495_PI429285431	1.2714942	A	2.020878	A	0.59485757720729	0	lncRNA	4444-1_{1..505}	"transcript_id ""ENST00000541419.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000541419.1"" | genecode_v17"	chr12	127629617	127630121	-	ENSG00000256001.1	ENST00000541419.1	RP11-575F12.2	RP11-575F12.2-001	NA	NA	NA	inter
CUST_28698_PI429285431	1.1042602	A	1.0748745	A	1.0205774709691	0	lncRNA	30397-1_{1..613}	n326086|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046558|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046558|-1.1078300|-0.1970240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326086|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046558|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046558|-1.1078300|-0.1970240	chr10	  5690443	  5691055	-	NA	NA	NA	NA	ASB13	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr10:5680820-5702762"	NA	inter
CUST_16209_PI429285431	0.92983985	A	0.91777706	A	1.00839634208258	0	lncRNA	17915-1_{1..841}	lnc-RP11-433C9.2.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-433C9.2.1-1:3	chr3	184168683	184169523	+	lnc-RP11-433C9.2.1-1	lnc-RP11-433C9.2.1-1:3	XLOC_002949	linc-EPHB3-2	NA	NA	NA	inter
LNCA_21_P0012140	6.2414722	P	6.109496	P	1.0957936890965	0	lncRNA	BX648489	NA	BX648489	NA	Hs.682103	FAM182B	"family with sequence similarity 182, member B"	NA	THC2508726	NA	"BROAD Institute lincRNA (XLOC_l2_008815), lincRNA [TCONS_l2_00016545]"	chr20:25829318-25829259	hs|20p11.1	Agilent_HUMAN_G3V2	BX648489	BX648489	chr20	 25829259	 25829318	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30617_PI429285431	4.7596345	P	5.015615	P	0.837417806280864	0	lncRNA	32399-1_{1..401}	n335950|X72434|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323276|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323276|2.3738400|-0.0644399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335950|X72434|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323276|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323276|2.3738400|-0.0644399	chr2	 89161396	 89161796	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41952_PI429285431	6.371185	P	6.949313	P	0.669832369147949	0	lncRNA	43724-1_{1..85}	ENST00000583764 ncrna:miRNA chromosome:GRCh37:11:67801364:67801448:1 gene:ENSG00000266737 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583764 ncrna:miRNA chromosome:GRCh37:11:67801364:67801448:1 gene:ENSG00000266737 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 67801364	 67801448	+	ENSG00000266737	ENST00000583764	NA	NA	ALDH3B1	NA	chr11:67791364-67796743	inter
CUST_21170_PI429285431	1.0486699	A	0.8980403	A	1.11005379992309	0	lncRNA	22794-1_{1..296}	lnc-BARHL2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BARHL2-3:1	chr1	 90468714	 90469009	-	lnc-BARHL2-3	lnc-BARHL2-3:1	ENSG00000232236.1	RP11-302M6.4	ZNF326	NA	chr1:90460678-90478748	inner
CUST_25258_PI429285431	0.91536736	A	0.90975505	A	1.00389773333448	0	lncRNA	26788-1_{1..539}	lnc-RP11-276H1.3.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-276H1.3.1-2:1	chr16	 12466389	 12466927	-	lnc-RP11-276H1.3.1-2	lnc-RP11-276H1.3.1-2:1	ENSG00000261394.1	RP11-165M1.3	SNX29	NA	chr16:12456389-12476439	inner
CUST_1967_PI429285431	1.9703212	A	1.6661313	A	1.23472512139786	0	lncRNA	1960-1_{1..589}	"transcript_id ""ENST00000509096.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509096.1"" | genecode_v17"	chr4	168228061	168228649	-	ENSG00000250150.1	ENST00000509096.1	RP11-436A7.1	RP11-436A7.1-001	NA	NA	NA	inter
CUST_36053_PI429285431	3.6382935	P	2.3009093	A	2.52692737291412	0	lncRNA	37368-1_{1..1321}	n344650|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_198|NULL|-1.5167100|-0.2605905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344650|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_198|NULL|-1.5167100|-0.2605905	chr1	159946783	159948103	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20353_PI429285431	5.526578	P	5.7352977	P	0.865304793591078	0	lncRNA	21995-1_{1..3000}	lnc-C14orf109-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C14orf109-1:1	chr14	 93533797	 93536796	+	lnc-C14orf109-1	lnc-C14orf109-1:1	ENSG00000258730.1	ITPK1-AS1	ITPK1	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60chr14:93523797-93548497"	NA	inner
CUST_21793_PI429285431	1.9633155	A	2.2891526	A	0.79783532124196	0	lncRNA	23403-1_{1..983}	lnc-GGCT-1:24	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GGCT-1:24	chr7	 30601082	 30602064	-	lnc-GGCT-1	lnc-GGCT-1:24	ENSG00000196295.5	AC005154.6	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20"	NA	inter
CUST_33799_PI429285431	5.388569	P	5.131668	P	1.19490920549662	0	lncRNA	35351-1_{1..253}	n340587|AB002442|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3049|NULL|-1.3290400|-0.4666343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340587|AB002442|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3049|NULL|-1.3290400|-0.4666343	chr5	114914346	114914598	+	NA	NA	NA	NA	TMED7-TICAM2	NA	chr5:114914339-114924598	inner
CUST_28119_PI429285431	5.0973854	P	4.590196	P	1.42127861934176	0	lncRNA	29742-1_{1..754}	n325393|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323866|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323866|-1.2305000|-0.3166448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325393|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323866|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323866|-1.2305000|-0.3166448	chr2	 19538691	 19539444	+	NA	NA	NA	NA	OSR1	"hg19_refFlat_OSR1:range=chr2:19552036-195535665'pad=0,hg19_refFlat_OSR1:range=chr2:19552036-195535665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20chr2:19551246-19558372"	NA	inner
CUST_41278_PI429285431	8.367319	P	8.7428	P	0.770848366086457	0	lncRNA	42259-1_{1..87}	ENST00000408249 ncrna:miRNA chromosome:GRCh37:8:129061398:129061484:1 gene:ENSG00000221176 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408249 ncrna:miRNA chromosome:GRCh37:8:129061398:129061484:1 gene:ENSG00000221176 gene_biotype:miRNA transcript_biotype:miRNA	chr8	129061398	129061484	+	ENSG00000221176	ENST00000408249	NA	NA	NA	NA	NA	inter
CUST_50555_PI429285431	4.6436296	P	4.9236603	P	0.823573491751441	0	lncRNA	54247-1_{1..320}	hg19_lincRNAsTranscripts_TCONS_l2_00030927 range=chrY:9861073-9868148 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030927 range=chrY:9861073-9868148 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrY	  9861073	  9861392	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36337_PI429285431	1.4651945	A	0.9102716	A	1.46909012058386	0	lncRNA	37567-2_{3001..3418}	n344864|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_413|NULL|-1.3509700|-0.2557729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344864|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_413|NULL|-1.3509700|-0.2557729	chr5	180675875	180676292	-	NA	NA	NA	NA	GNB2L1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90chr5:180663928-180670906"	NA	inter
CUST_5110_PI429285431	0.9051804	A	0.9035771	A	1.00111194062268	0	lncRNA	5050-1_{1..642}	"transcript_id ""ENST00000562501.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562501.1"" | genecode_v17"	chr15	 24815173	 24815814	+	ENSG00000259905.1	ENST00000562501.1	PWRN1	PWRN1-006	NA	NA	NA	inter
CUST_44787_PI429285431	5.4970055	P	5.7141347	P	0.860275585512138	0	lncRNA	49325-2_{3001..5530}	"gi|259013566|ref|NR_028493.1| Homo sapiens LYR motif containing 2 (LYRM2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|259013566|ref|NR_028493.1| Homo sapiens LYR motif containing 2 (LYRM2), transcript variant 2, non-coding RNA"	Chr6	 90344943	 90347472	-	57226	NR_028493.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60"	NA	inter
CUST_11495_PI429285431	0.9120522	A	0.9033439	A	1.00605438775655	0	lncRNA	13063-1_{1..890}	lnc-CHSY1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHSY1-1:1	chr15	101710665	101711554	-	lnc-CHSY1-1	lnc-CHSY1-1:1	XLOC_011614	linc-LINS-4	CHSY1	NA	chr15:101715928-101721509	inter
CUST_19018_PI429285431	0.9173598	A	0.9174139	A	0.99996250144062	0	lncRNA	20708-1_{1..561}	lnc-SMOC1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMOC1-2:3	chr14	 70696735	 70697295	+	lnc-SMOC1-2	lnc-SMOC1-2:3	ENSG00000258422	RP11-486O13.2	NA	NA	NA	inter
CUST_36195_PI429285431	0.9172273	A	1.4557533	A	0.688473962975041	0	lncRNA	37455-3_{6001..6688}	n344744|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_293|NULL|-1.3219500|-0.2905813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344744|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_293|NULL|-1.3219500|-0.2905813	chr13	109888818	109889505	-	NA	NA	NA	NA	NA	"hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40"	NA	inter
CUST_87_PI429285431	2.5398133	A	2.3750389	A	1.12099077050694	0	lncRNA	80-2_{3001..3584}	"transcript_id ""ENST00000317726.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000317726.4"" | genecode_v17"	chr19	 10335111	 10335694	-	ENSG00000175898.4	ENST00000317726.4	CTD-2369P2.2	CTD-2369P2.2-002	S1PR2	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_S1PR2:range=chr19:10334520-103355815'pad=0,hg19_refFlat_S1PR2:range=chr19:10334520-103355815'pad=0 3'pad=0 strand=- repeatMasking=none,-106.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80chr19:10332109-10341948"	NA	inner
CUST_47416_PI429285431	6.2664275	P	5.0553455	P	2.31511201673686	0	lncRNA	51457-2_{3001..5075}	"gi|408440837|ref|NR_073200.1| Homo sapiens adenosine deaminase, RNA-specific, B1 (ADARB1), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|408440837|ref|NR_073200.1| Homo sapiens adenosine deaminase, RNA-specific, B1 (ADARB1), transcript variant 8, non-coding RNA"	Chr21	 46497493	 46499567	+	104	NR_073200.1	NA	NA	NA	NA	NA	inter
CUST_26512_PI429285431	5.0870357	P	5.976457	P	0.539830613991254	0	lncRNA	28020-1_{1..824}	lnc-DNTT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DNTT-1:1	chr10	 98066266	 98067089	+	lnc-DNTT-1	lnc-DNTT-1:1	ENSG00000229418.1	RP11-35J23.1	DNTT	NA	chr10:98064085-98076452	inner
CUST_2093_PI429285431	1.3901248	A	2.0541267	A	0.63112518487649	0	lncRNA	2084-1_{1..285}	"transcript_id ""ENST00000511182.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511182.1"" | genecode_v17"	chr5	 17369334	 17369618	-	ENSG00000249199.1	ENST00000511182.1	CTD-2139B15.5	CTD-2139B15.5-001	NA	NA	NA	inter
CUST_5184_PI429285431	1.520637	A	1.4619808	A	1.04149520695874	0	lncRNA	5125-1_{1..855}	"transcript_id ""ENST00000559918.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559918.1"" | genecode_v17"	chr15	 51985413	 51986267	-	ENSG00000259241.1	ENST00000559918.1	RP11-313P18.2	RP11-313P18.2-001	SCG3	NA	chr15:51975413-51997962	inner
CUST_16868_PI429285431	0.9116934	A	1.1249937	A	0.862561781810308	0	lncRNA	18574-1_{1..413}	lnc-TMEM132B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132B-3:1	chr12	126585235	126585647	+	lnc-TMEM132B-3	lnc-TMEM132B-3:1	XLOC_009935	linc-TMEM132C-14	NA	NA	NA	inter
LNCA_21_P0009568	0.92230064	A	0.9061614	A	1.01124967570413	0	lncRNA	TCONS_00026546	NA	NA	NA	NA	XLOC_012866	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012866), lincRNA [TCONS_00026546]"	chr18:62603584-62603525	hs|18q22.1	Agilent_HUMAN_G3V2	TCONS_00026546	TCONS_00026546	chr18	 62603525	 62603584	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7438_PI429285431	5.580219	P	5.8155694	P	0.849478653748886	0	lncRNA	9081-1_{1..2110}	lnc-EVX1-15:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EVX1-15:1	chr7	 27497304	 27499413	+	lnc-EVX1-15	lnc-EVX1-15:1	ENSG00000248357	ENST00000506075	NA	"hg19_refFlat_EIF4H:range=chr7:73588714-736096385'pad=0,hg19_refFlat_EIF4H:range=chr7:73588714-736096385'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.70"	NA	inter
CUST_6732_PI429285431	2.2657318	A	2.4041631	P	0.908506473857485	0	lncRNA	6680-1_{1..453}	"transcript_id ""ENST00000431983.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431983.1"" | genecode_v17"	chr20	 54871023	 54871475	-	ENSG00000230843.1	ENST00000431983.1	RP11-380D15.3	RP11-380D15.3-001	NA	NA	NA	inter
LNCA_21_P0008007	0.92147636	A	0.90545225	A	1.01116897914213	0	lncRNA	ENST00000450888	NA	NA	NA	NA	XLOC_010682	NA	ENST00000450888	NA	NA	"BROAD Institute lincRNA (XLOC_010682), lincRNA [TCONS_00021677]"	chr13:88079531-88079472	hs|13q31.2	Agilent_HUMAN_G3V2	ENST00000450888	ENST00000450888	chr13	 88079472	 88079531	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4861_PI429285431	9.294563	P	9.742024	P	0.733332305012478	0	lncRNA	4804-1_{1..295}	"transcript_id ""ENST00000555156.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555156.1"" | genecode_v17"	chr14	 62600867	 62601161	-	ENSG00000259142.1	ENST00000555156.1	LINC00644	LINC00644-001	NA	NA	NA	inter
CUST_5232_PI429285431	3.2674246	P	2.375935	A	1.85509053859918	0	lncRNA	5173-1_{1..630}	"transcript_id ""ENST00000563041.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563041.1"" | genecode_v17"	chr15	 72110755	 72111384	+	ENSG00000260037.1	ENST00000563041.1	CTD-2524L6.3	CTD-2524L6.3-002	MYO9A	NA	chr15:72118351-72124796	inter
CUST_39913_PI429285431	7.655629	P	7.8397026	P	0.880214107738279	0	lncRNA	40794-1_{1..728}	n406656|NR_024187|lncRNA|Homosapiens||RefGeneNoncode|NR_024187||1.6053500|-0.1511806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406656|NR_024187|lncRNA|Homosapiens||RefGeneNoncode|NR_024187||1.6053500|-0.1511806	chr17	 29036625	 29037352	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10282_PI429285431	0.9115011	A	0.9207413	A	0.993615648553298	0	lncRNA	11808-1_{1..1868}	lnc-ATF3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATF3-1:2	chr1	212734097	212735964	+	lnc-ATF3-1	lnc-ATF3-1:2	XLOC_000555	linc-ATF3-1	ATF3	NA	chr1:212738697-212744165	inter
CUST_35475_PI429285431	2.255811	A	1.9968314	A	1.1966320424917	0	lncRNA	36884-1_{1..1817}	n342572|BC051809|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5071|NULL|-0.8625160|-0.4209388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342572|BC051809|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5071|NULL|-0.8625160|-0.4209388	chr18	 32848503	 32850319	+	NA	NA	NA	NA	ZSCAN30	NA	chr18:32838503-32860202	inner
CUST_31061_PI429285431	2.4935696	A	3.7599764	P	0.415693818529428	0	lncRNA	32851-1_{1..608}	n337288|BC128230|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389756|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389756|-0.8918500|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337288|BC128230|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389756|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389756|-0.8918500|-1.0000000	chr3	  3841996	  3842603	-	NA	NA	NA	NA	LRRN1	NA	chr3:3841121-3852681	inner
CUST_2579_PI429285431	3.5565243	P	2.5895262	A	1.95476895842899	0	lncRNA	2567-1_{1..593}	"transcript_id ""ENST00000404689.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000404689.2"" | genecode_v17"	chr6	 93432721	 93433313	-	ENSG00000220908.2	ENST00000404689.2	RP11-127B16.1	RP11-127B16.1-001	NA	NA	NA	inter
CUST_4208_PI429285431	0.9298215	A	0.88998795	A	1.02799521553591	0	lncRNA	4167-1_{1..351}	"transcript_id ""ENST00000538920.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000538920.1"" | genecode_v17"	chr12	 27258084	 27258434	-	ENSG00000256226.1	ENST00000538920.1	RP11-582E3.2	RP11-582E3.2-001	NA	NA	NA	inter
CUST_25029_PI429285431	4.733572	P	5.0546675	P	0.80046182188736	0	lncRNA	26568-1_{1..428}	lnc-MAPK15-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAPK15-3:3	chr8	144872141	144872568	+	lnc-MAPK15-3	lnc-MAPK15-3:3	ENSG00000214733.4	RP11-429J17.8	SCRIB	NA	chr8:144873090-144882445	inter
CUST_42489_PI429285431	1.0948912	A	0.9217125	A	1.12754006669875	0	lncRNA	45250-1_{1..132}	ENST00000365074 ncrna:snoRNA chromosome:GRCh37:1:205700349:205700480:-1 gene:ENSG00000201944 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365074 ncrna:snoRNA chromosome:GRCh37:1:205700349:205700480:-1 gene:ENSG00000201944 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	205700349	205700480	-	ENSG00000201944	ENST00000365074	NA	NA	NUCKS1	NA	chr1:205690349-205710480	inner
CUST_35101_PI429285431	7.0054812	P	6.327202	P	1.60022991390405	0	lncRNA	36508-1_{1..206}	n342070|AF128543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4551|NULL|-1.2083800|-0.1711362	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342070|AF128543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4551|NULL|-1.2083800|-0.1711362	chr12	133262082	133262287	-	NA	NA	NA	NA	PXMP2	NA	chr12:133264192-133272290	inner
CUST_43152_PI429285431	5.174563	P	5.059657	P	1.0829044856813	0	lncRNA	47967-1_{1..788}	ENST00000598804 havana:sense_intronic chromosome:GRCh37:1:146147430:146157213:-1 gene:ENSG00000227733 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000598804 havana:sense_intronic chromosome:GRCh37:1:146147430:146157213:-1 gene:ENSG00000227733 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr1	146147430	146148217	-	ENSG00000227733	ENST00000598804	NA	NA	NA	NA	NA	inter
CUST_13379_PI429285431	2.7691438	A	2.6538296	A	1.08321092892858	0	lncRNA	15014-1_{1..534}	lnc-IDS-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IDS-5:1	chrX	146982566	146983099	-	lnc-IDS-5	lnc-IDS-5:1	XLOC_008252	linc-CXorf51-3	NA	NA	NA	inter
CUST_42504_PI429285431	0.89810425	A	1.1812913	A	0.82177363482247	0	lncRNA	45279-1_{1..72}	ENST00000516319 ncrna:snoRNA chromosome:GRCh37:13:21714025:21714096:-1 gene:ENSG00000252128 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516319 ncrna:snoRNA chromosome:GRCh37:13:21714025:21714096:-1 gene:ENSG00000252128 gene_biotype:snoRNA transcript_biotype:snoRNA	chr13	 21714025	 21714096	-	ENSG00000252128	ENST00000516319	NA	NA	SAP18	NA	chr13:21714653-21723224	inter
CUST_24250_PI429285431	3.3329349	P	3.6843045	P	0.783839618675569	0	lncRNA	25801-1_{1..623}	lnc-IRAK3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IRAK3-1:1	chr12	 66527832	 66528454	+	lnc-IRAK3-1	lnc-IRAK3-1:1	ENSG00000239335.4	RP11-745O10.2	LLPH	NA	chr12:66517832-66524533	inter
LNCA_21_P0014397	12.384716	P	12.050013	P	1.2611177624604	0	lncRNA	XR_109594	XR_109594	XR_109594	NA	Hs.405849	LOC100505490	uncharacterized LOC100505490	ENST00000419662	THC2633654	NA	"PREDICTED: Homo sapiens hypothetical LOC100505490, transcript variant 1 (LOC100505490), miscRNA [XR_109594]"	chr20:32580464-32580405	hs|20q11.22	Agilent_HUMAN_G3V2	XR_109594	XR_109594	chr20	 32580405	 32580464	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010644	3.0441163	P	2.6424274	A	1.3210535054898	0	lncRNA	TCONS_l2_00001463	NA	NA	NA	NA	XLOC_l2_001066	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001066), lincRNA [TCONS_l2_00001463]"	chr1:117315631-117315572	hs|1p13.1	Agilent_HUMAN_G3V2	TCONS_l2_00001463	TCONS_l2_00001463	chr1	117315572	117315631	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18308_PI429285431	0.9084909	A	0.90033054	A	1.00567235776808	0	lncRNA	20036-2_{3001..6000}	lnc-ITSN1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ITSN1-2:2	chr21	 35344538	 35347537	+	lnc-ITSN1-2	lnc-ITSN1-2:2	ENSG00000237945	AP000569.8	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-54.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
CUST_42915_PI429285431	10.625706	P	10.429823	P	1.145425002284	0	lncRNA	46016-1_{1..130}	ENST00000364432 ncrna:snoRNA chromosome:GRCh37:9:130210780:130210909:-1 gene:ENSG00000201302 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364432 ncrna:snoRNA chromosome:GRCh37:9:130210780:130210909:-1 gene:ENSG00000201302 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	130210780	130210909	-	ENSG00000201302	ENST00000364432	NA	NA	ZNF79	NA	chr9:130200780-130207651	inter
CUST_36288_PI429285431	5.2712903	P	5.475177	P	0.868208408434409	0	lncRNA	37520-1_{1..2293}	n344815|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_364|NULL|-1.3271400|-0.2294286	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344815|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_364|NULL|-1.3271400|-0.2294286	chr4	129349182	129351474	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4708_PI429285431	2.6820428	A	2.419744	A	1.19938829623033	0	lncRNA	4655-1_{1..418}	"transcript_id ""ENST00000551067.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551067.1"" | genecode_v17"	chr14	 19515341	 19515758	+	ENSG00000257891.1	ENST00000551067.1	CTD-2311B13.1	CTD-2311B13.1-002	POTEG	NA	chr14:19505341-19529837	inter
CUST_25582_PI429285431	0.9413032	A	1.1293743	A	0.877778537190567	0	lncRNA	27112-1_{1..523}	lnc-AIRE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AIRE-1:1	chr21	 45671010	 45671532	+	lnc-AIRE-1	lnc-AIRE-1:1	ENSG00000232010.1	AP001059.5	DNMT3L	"hg19_refFlat_DNMT3L:range=chr21:45666280-456811425'pad=0,hg19_refFlat_DNMT3L:range=chr21:45666280-456811425'pad=0 3'pad=0 strand=- repeatMasking=none,-100.40chr21:45666223-45681403"	NA	inner
LNCA_21_P0005423	0.9251539	A	2.6984408	A	0.292541478636726	0	lncRNA	ENST00000484322	NA	EU233817	NA	Hs.583532	XLOC_006229	NA	ENST00000484322	NA	NA	"BROAD Institute lincRNA (XLOC_006229), lincRNA [TCONS_00013574]"	chr7:124028512-124028571	hs|7q31.33	Agilent_HUMAN_G3V2	ENST00000484322	ENST00000484322	chr7	124028512	124028571	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44521_PI429285431	1.0681028	A	1.0672032	A	1.00062374965459	0	lncRNA	49117-1_{1..3000}	"gi|310119523|ref|XR_108573.1| PREDICTED: Homo sapiens LIFR antisense RNA 1 (LIFR-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310119523|ref|XR_108573.1| PREDICTED: Homo sapiens LIFR antisense RNA 1 (LIFR-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_108573.1	NA	NA	NA	NA	NA	Unknown
CUST_36542_PI429285431	1.001378	A	1.2957916	A	0.81540369526947	0	lncRNA	37739-1_{1..3000}	n345041|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_590|NULL|-1.5868200|-0.3322607	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345041|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_590|NULL|-1.5868200|-0.3322607	chr9	  4876529	  4879528	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20"	NA	inter
CUST_15608_PI429285431	5.8035636	P	6.9532814	P	0.450713384986373	0	lncRNA	17295-1_{1..543}	lnc-SRPK2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRPK2-1:4	chr7	104654328	104654870	-	lnc-SRPK2-1	lnc-SRPK2-1:4	XLOC_006554	linc-ORC5-2	MLL5	NA	chr7:104654637-104664454	inter
CUST_22133_PI429285431	2.5140874	A	3.4791336	P	0.512262006882717	0	lncRNA	23735-1_{1..409}	lnc-TMEM184A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM184A-1:2	chr7	  1585235	  1585643	-	lnc-TMEM184A-1	lnc-TMEM184A-1:2	ENSG00000241340.1	AC093734.14	MAFK	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80chr7:1575235-1582679"	NA	inner
CUST_15870_PI429285431	0.9134301	A	0.904188	A	1.00642669873055	0	lncRNA	17561-1_{1..3000}	lnc-PDE6B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE6B-1:1	chr4	   575913	   578912	+	lnc-PDE6B-1	lnc-PDE6B-1:1	XLOC_003411	linc-PDE6B	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10"	NA	inter
CUST_16615_PI429285431	2.0894783	A	1.8038788	A	1.21891666919882	0	lncRNA	18315-1_{1..1413}	lnc-CHL1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHL1-1:2	chr3	   111531	   112943	+	lnc-CHL1-1	lnc-CHL1-1:2	XLOC_002563	linc-CHL1-1	NA	NA	NA	inter
CUST_43376_PI429285431	0.9221654	A	1.8423676	A	0.52843495262782	0	lncRNA	48190-1_{1..1965}	"gi|213021183|ref|NR_024455.1| Homo sapiens uncharacterized LOC100133612 (LOC100133612), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|213021183|ref|NR_024455.1| Homo sapiens uncharacterized LOC100133612 (LOC100133612), non-coding RNA"	Chr1	  3816968	  3818932	+	100133612	NR_024455.1	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60"	NA	inter
CUST_41522_PI429285431	2.3549213	A	1.2410891	A	2.1641975563847	0	lncRNA	42762-1_{1..68}	ENST00000581087 ncrna:miRNA chromosome:GRCh37:11:111218482:111218549:1 gene:ENSG00000264032 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581087 ncrna:miRNA chromosome:GRCh37:11:111218482:111218549:1 gene:ENSG00000264032 gene_biotype:miRNA transcript_biotype:miRNA	chr11	111218482	111218549	+	ENSG00000264032	ENST00000581087	NA	NA	POU2AF1	NA	chr11:111222980-111228549	inter
CUST_34574_PI429285431	5.1742754	P	5.4115353	P	0.848355057664208	0	lncRNA	36034-1_{1..917}	n341457|BC038538|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3927|NULL|-1.0973300|-0.2267407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n341457|BC038538|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3927|NULL|-1.0973300|-0.2267407	chr8	 20133283	 20134199	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16350_PI429285431	9.516175	P	9.361769	P	1.11296328414704	0	lncRNA	18050-1_{1..239}	lnc-C14orf118-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf118-1:3	chr14	 76731028	 76731266	+	lnc-C14orf118-1	lnc-C14orf118-1:3	XLOC_010878	linc-ESRRB-2	NA	NA	NA	inter
CUST_39518_PI429285431	6.288588	P	6.3109007	P	0.984652999059662	0	lncRNA	40464-1_{1..1026}	n387328|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011cmd.1||1.6902800|-0.2164622	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387328|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011cmd.1||1.6902800|-0.2164622	chr5	  1568636	  1569661	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39896_PI429285431	0.91440535	A	1.0688448	A	0.898481404318714	0	lncRNA	40780-2_{3001..3422}	n406596|NR_024115|lncRNA|Homosapiens||RefGeneNoncode|NR_024115||2.6855400|-0.2010907	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406596|NR_024115|lncRNA|Homosapiens||RefGeneNoncode|NR_024115||2.6855400|-0.2010907	chr7	150325463	150325884	-	NA	NA	NA	NA	GIMAP6	NA	chr7:150312463-150329680	inner
CUST_49122_PI429285431	1.0689707	A	0.90606934	A	1.11953634105628	0	lncRNA	52947-1_{1..1083}	hg19_lincRNAsTranscripts_TCONS_l2_00020565 range=chr4:70276576-70289107 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020565 range=chr4:70276576-70289107 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 70276576	 70277658	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15117_PI429285431	1.3587577	A	1.3874959	A	0.980277286133858	0	lncRNA	16776-1_{1..492}	lnc-RP11-181C3.1.1-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-181C3.1.1-1:11	chr12	 98884772	 98885263	-	lnc-RP11-181C3.1.1-1	lnc-RP11-181C3.1.1-1:11	XLOC_010167	linc-CDK17-4	NA	NA	NA	inter
CUST_39416_PI429285431	1.154315	A	0.9300281	A	1.16819968429102	0	lncRNA	40376-1_{1..999}	n386692|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010scb.1||4.2385000|-0.1813177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386692|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010scb.1||4.2385000|-0.1813177	chr11	130238788	130239786	+	NA	NA	NA	NA	ADAMTS8	NA	chr11:130274818-130282193	inter
CUST_22265_PI429285431	0.92025596	A	1.1227586	A	0.869041730160159	0	lncRNA	23866-1_{1..723}	lnc-N4BP2L2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-N4BP2L2-2:1	chr13	 33859607	 33860329	-	lnc-N4BP2L2-2	lnc-N4BP2L2-2:1	ENSG00000249121.1	RP11-81F11.3	STARD13	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80chr13:33849607-33859901"	NA	inner
CUST_20928_PI429285431	1.0047863	A	1.1461502	A	0.90666160715642	0	lncRNA	22559-1_{1..748}	lnc-PARP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PARP2-1:1	chr14	 20774596	 20775343	+	lnc-PARP2-1	lnc-PARP2-1:1	ENSG00000258459.1	CTD-2292M16.7	TTC5	"hg19_refFlat_TTC5:range=chr14:20757786-207740965'pad=0,hg19_refFlat_TTC5:range=chr14:20757786-207740965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60chr14:20764596-20774153"	NA	inter
CUST_19810_PI429285431	1.4597074	A	2.039477	A	0.669070620182353	0	lncRNA	21467-1_{1..624}	lnc-CLEC4E-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLEC4E-2:8	chr12	  8527013	  8527636	-	lnc-CLEC4E-2	lnc-CLEC4E-2:8	ENSG00000226091.2	RP11-90D4.2	CLEC6A	NA	chr12:8517013-8537109	inter
LNCA_21_P0011995	0.98994166	A	0.9292665	A	1.04295373361439	0	lncRNA	ENST00000441014	NA	NA	NA	NA	XLOC_l2_007184	NA	ENST00000441014	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007184), lincRNA [TCONS_l2_00015229]"	chr2:7568536-7576143	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000441014	ENST00000441014	chr2	  7568536	  7576143	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39499_PI429285431	0.9608108	A	0.96317434	A	0.998363060162772	0	lncRNA	40446-1_{1..344}	n387233|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ain.1||1.1729100|-0.0983211	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387233|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ain.1||1.1729100|-0.0983211	chr22	 22516609	 22516952	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44644_PI429285431	1.8323526	A	1.4730518	A	1.28280403781956	0	lncRNA	49208-1_{1..605}	"gi|310119674|ref|XR_110079.1| PREDICTED: Homo sapiens uncharacterized LOC100507546, transcript variant 3 (LOC100507546), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310119674|ref|XR_110079.1| PREDICTED: Homo sapiens uncharacterized LOC100507546, transcript variant 3 (LOC100507546), misc_RNA"	NA	NA	NA	NA	NA	XR_110079.1	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40"	NA	Unknown
CUST_34980_PI429285431	0.9148165	A	0.92736757	A	0.99133799444159	0	lncRNA	36396-1_{1..2187}	n341904|AK127397|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4385|NULL|-1.3254800|-0.3746506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341904|AK127397|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4385|NULL|-1.3254800|-0.3746506	chr6	 72082955	 72085141	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24937_PI429285431	4.7229557	P	4.8577805	P	0.910780431492785	0	lncRNA	26477-1_{1..448}	lnc-NUDCD2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUDCD2-2:2	chr5	162864189	162864636	-	lnc-NUDCD2-2	lnc-NUDCD2-2:2	ENSG00000250061.1	RP11-541P9.3	CCNG1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60chr5:162864577-162872022"	NA	inter
CUST_50792_PI429285431	4.3294992	P	4.2744007	P	1.03893003382148	0	lncRNA	54446-1_{1..2479}	hg19_lincRNAsTranscripts_TCONS_l2_00004350 range=chr11:3424159-3432082 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004350 range=chr11:3424159-3432082 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	  3424159	  3426637	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0,hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0,hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0,hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0,hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
CUST_5158_PI429285431	1.2458941	A	1.072775	A	1.12749348720829	0	lncRNA	5098-1_{1..401}	"transcript_id ""ENST00000561261.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561261.1"" | genecode_v17"	chr15	 40664026	 40664426	+	ENSG00000259714.1	ENST00000561261.1	LINC00594	LINC00594-001	DISP2	NA	chr15:40654026-40663256	inter
CUST_19382_PI429285431	1.0138255	A	0.93849504	A	1.05360234374882	0	lncRNA	21044-1_{1..471}	lnc-KCNQ4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-KCNQ4-1:1	chr1	 41342139	 41342609	+	lnc-KCNQ4-1	lnc-KCNQ4-1:1	ENSG00000229528.1	RP5-1066H13.4	NA	NA	NA	inter
CUST_37324_PI429285431	3.21824	A	3.1245832	P	1.06707146422799	0	lncRNA	38430-1_{1..1740}	n345767|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1316|NULL|-1.2927400|-0.2566101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345767|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1316|NULL|-1.2927400|-0.2566101	chr16	 53076475	 53078214	-	NA	NA	NA	NA	CHD9	NA	chr16:53066475-53090674	inter
CUST_41531_PI429285431	0.911485	A	0.9917485	A	0.945884870484682	0	lncRNA	42788-1_{1..82}	ENST00000581646 ncrna:miRNA chromosome:GRCh37:1:23046010:23046091:1 gene:ENSG00000265422 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581646 ncrna:miRNA chromosome:GRCh37:1:23046010:23046091:1 gene:ENSG00000265422 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 23046010	 23046091	+	ENSG00000265422	ENST00000581646	NA	NA	EPHB2	NA	chr1:23037331-23056091	inner
CUST_39917_PI429285431	5.944355	P	6.0810566	P	0.909596368818354	0	lncRNA	40796-2_{3001..6000}	n406668|NR_024207|lncRNA|Homosapiens||RefGeneNoncode|NR_024207||13.0783000|-0.0860457	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406668|NR_024207|lncRNA|Homosapiens||RefGeneNoncode|NR_024207||13.0783000|-0.0860457	chr8	145165628	145168627	+	NA	NA	NA	NA	MAF1	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80chr8:145159305-145162515"	NA	inter
CUST_28189_PI429285431	0.90353614	A	0.9043196	A	0.99945709433656	0	lncRNA	29816-1_{1..627}	n325469|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323191|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323191|-1.2275500|-0.4091197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325469|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323191|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323191|-1.2275500|-0.4091197	chr2	  4655664	  4656290	-	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-57.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80"	NA	inter
CUST_37628_PI429285431	6.8386545	P	7.2971535	P	0.727743018885546	0	lncRNA	38725-1_{1..3000}	n346107|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1657|NULL|-1.3084500|-0.2458811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346107|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1657|NULL|-1.3084500|-0.2458811	chr22	 42665996	 42668995	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1368_PI429285431	0.92213917	A	0.9154394	A	1.00465472642469	0	lncRNA	1356-1_{1..556}	"transcript_id ""ENST00000481004.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000481004.1"" | genecode_v17"	chr3	 65160633	 65161188	+	ENSG00000243149.1	ENST00000481004.1	RP11-543A18.1	RP11-543A18.1-001	NA	NA	NA	inter
CUST_15530_PI429285431	0.91261363	A	0.9045696	A	1.00559126984199	0	lncRNA	17215-1_{1..266}	lnc-ZFY-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFY-2:1	chrY	  2981711	  2981976	+	lnc-ZFY-2	lnc-ZFY-2:1	XLOC_008277	linc-TGIF2LY-1	NA	NA	NA	inter
CUST_31852_PI429285431	0.91894984	A	0.9085558	A	1.00723061508747	0	lncRNA	33585-1_{1..1318}	n338400|CR616131|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|796|NULL|-1.2701900|-0.4503211	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338400|CR616131|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|796|NULL|-1.2701900|-0.4503211	chr14	 74583620	 74584937	+	NA	NA	NA	NA	LIN52	"hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30chr14:74573620-74594938"	NA	inner
CUST_16540_PI429285431	8.721199	P	8.539551	P	1.13417872539376	0	lncRNA	18240-1_{1..771}	lnc-BLID-1:21	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BLID-1:21	chr11	121908735	121909505	-	lnc-BLID-1	lnc-BLID-1:21	XLOC_009582	linc-TRIM29-3	NA	NA	NA	inter
CUST_43241_PI429285431	0.9057163	A	1.561415	A	0.634767997446003	0	lncRNA	48058-1_{1..357}	ENST00000592671 havana:sense_intronic chromosome:GRCh37:19:10601015:10601676:-1 gene:ENSG00000267197 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000592671 havana:sense_intronic chromosome:GRCh37:19:10601015:10601676:-1 gene:ENSG00000267197 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 10601015	 10601371	-	ENSG00000267197	ENST00000592671	NA	NA	KEAP1	NA	chr19:10596796-10611676	inner
CUST_40666_PI429285431	7.994924	P	7.8126745	P	1.13465169488466	0	lncRNA	41399-1_{1..1126}	n410219|NR_037169_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037169_4||-1.0099300|-0.1938878	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410219|NR_037169_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037169_4||-1.0099300|-0.1938878	chr6	  3435316	  3436441	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3425316-3446880	inner
CUST_31390_PI429285431	1.1251924	A	2.1301353	A	0.498289852690251	0	lncRNA	33167-1_{1..1107}	n337856|BC017958|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|239|NULL|3.0345900|-0.3810478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337856|BC017958|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|239|NULL|3.0345900|-0.3810478	chrX	133378258	133379364	+	NA	NA	NA	NA	CCDC160	NA	chrX:133368258-133379808	inner
CUST_19416_PI429285431	1.5790284	A	0.92523396	A	1.57330070560559	0	lncRNA	21077-1_{1..390}	lnc-KCTD3-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCTD3-2:4	chr1	216260064	216260453	+	lnc-KCTD3-2	lnc-KCTD3-2:4	ENSG00000233620.1	RP11-22M7.2	USH2A	"hg19_refFlat_USH2A:range=chr1:215799123-2165956785'pad=0,hg19_refFlat_USH2A:range=chr1:215799123-2165956785'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90chr1:216250064-216270247"	NA	inner
CUST_19107_PI429285431	2.973948	A	4.910472	P	0.261245121206103	0	lncRNA	20794-1_{1..1746}	lnc-HSP90AA1-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,"	>lnc-HSP90AA1-8:1	NA	NA	     1745	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23392_PI429285431	0.90140414	A	1.0670595	A	0.89152344314792	0	lncRNA	24960-1_{1..748}	lnc-RP11-778D12.2.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-778D12.2.1-4:1	chr8	107072609	107073356	-	lnc-RP11-778D12.2.1-4	lnc-RP11-778D12.2.1-4:1	ENSG00000251003.2	RP11-152P17.2	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
CUST_32210_PI429285431	13.439226	P	13.682455	P	0.844852269772889	0	lncRNA	33905-1_{1..3000}	n338786|BC041859|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1208|NULL|-1.0312900|-0.3242755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338786|BC041859|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1208|NULL|-1.0312900|-0.3242755	chr13	 79170263	 79173262	+	NA	NA	NA	NA	POU4F1	NA	chr13:79173227-79177695	inter
CUST_28322_PI429285431	0.9096435	A	0.91059244	A	0.999342461187935	0	lncRNA	29967-1_{1..347}	n325627|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045815|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045815|-1.1838300|-0.2896575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325627|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045815|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045815|-1.1838300|-0.2896575	chr13	111602302	111602648	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6603_PI429285431	6.3677855	P	6.251886	P	1.08365047572357	0	lncRNA	6551-1_{1..385}	"transcript_id ""ENST00000587920.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587920.1"" | genecode_v17"	chr19	 57047527	 57047911	-	ENSG00000267421.2	ENST00000587920.1	AC005498.3	AC005498.3-003	ZNF471	NA	chr19:57037527-57040270	inter
CUST_43657_PI429285431	2.255352	A	0.92777455	A	2.50980877866426	0	lncRNA	48413-1_{1..1879}	"gi|223556016|ref|NR_026844.1| Homo sapiens ankyrin repeat domain 36B pseudogene 1 (ANKRD36BP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223556016|ref|NR_026844.1| Homo sapiens ankyrin repeat domain 36B pseudogene 1 (ANKRD36BP1), non-coding RNA"	Chr1	168214803	168216681	-	84832	NR_026844.1	NA	NA	NA	NA	NA	inter
CUST_40111_PI429285431	7.2004914	P	7.7184834	P	0.698343138659583	0	lncRNA	40956-1_{1..1796}	n407556|NR_027014|lncRNA|Homosapiens||RefGeneNoncode|NR_027014||3.9757600|-0.1643032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407556|NR_027014|lncRNA|Homosapiens||RefGeneNoncode|NR_027014||3.9757600|-0.1643032	chr11	  3818953	  3820748	+	NA	NA	NA	NA	NUP98	NA	chr11:3808953-3819022	inner
CUST_40272_PI429285431	4.586581	P	4.488154	P	1.07060552277268	0	lncRNA	41082-1_{1..384}	n408215|NR_028370|lncRNA|Homosapiens||RefGeneNoncode|NR_028370||-0.9177050|-0.1189808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408215|NR_028370|lncRNA|Homosapiens||RefGeneNoncode|NR_028370||-0.9177050|-0.1189808	chr20	  5100231	  5100614	+	NA	NA	NA	NA	CDS2	"hg19_refFlat_PCNA:range=chr20:5095929-51004445'pad=0,hg19_refFlat_PCNA:range=chr20:5095929-51004445'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30chr20:5107407-5110615"	NA	inter
CUST_6851_PI429285431	0.9079702	A	0.9107894	A	0.998047787519035	0	lncRNA	6799-1_{1..1361}	"transcript_id ""ENST00000421051.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421051.1"" | genecode_v17"	chr21	 34484005	 34485365	-	ENSG00000226527.1	ENST00000421051.1	AP000289.6	AP000289.6-001	NA	NA	NA	inter
CUST_43262_PI429285431	2.3766818	A	2.3236313	A	1.03745625097874	0	lncRNA	48080-1_{1..1894}	ENST00000602886 havana:sense_intronic chromosome:GRCh37:15:31218717:31220610:1 gene:ENSG00000270015 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602886 havana:sense_intronic chromosome:GRCh37:15:31218717:31220610:1 gene:ENSG00000270015 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr15	 31218717	 31220610	+	ENSG00000270015	ENST00000602886	NA	NA	FAN1	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10chr15:31208717-31230610"	NA	inner
LNCA_21_P0014927	4.2411237	P	3.8323483	P	1.32755846685439	0	lncRNA	XR_133265	XR_133265	XR_133265	NA	Hs.638423	LOC100291105	uncharacterized LOC100291105	ENST00000417346	THC2488289	NA	"PREDICTED: Homo sapiens hypothetical LOC100291105 (LOC100291105), miscRNA [XR_133265]"	chr20:55959444-55959385	hs|20q13.31	Agilent_HUMAN_G3V2	XR_133265	XR_133265	chr20	 55959385	 55959444	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46288_PI429285431	8.443739	P	8.943873	P	0.707041106940951	0	lncRNA	50523-1_{1..1370}	"gi|373251215|ref|NR_046051.1| Homo sapiens thiamine triphosphatase (THTPA), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|373251215|ref|NR_046051.1| Homo sapiens thiamine triphosphatase (THTPA), transcript variant 8, non-coding RNA"	Chr14	 23980969	 23982338	+	79178	NR_046051.1	NA	NA	NA	NA	NA	inter
CUST_46613_PI429285431	6.831583	P	7.0917144	P	0.835011863468828	0	lncRNA	50791-1_{1..3000}	"gi|134288910|ref|NR_003501.1| Homo sapiens glutamyl-tRNA synthetase 2, mitochondrial (EARS2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|134288910|ref|NR_003501.1| Homo sapiens glutamyl-tRNA synthetase 2, mitochondrial (EARS2), transcript variant 2, non-coding RNA"	Chr16	 23533334	 23536333	-	124454	NR_003501.1	NA	NA	NA	NA	NA	inter
CUST_41863_PI429285431	0.9196882	A	0.9238332	A	0.997131028324294	0	lncRNA	43519-1_{1..87}	ENST00000362263 ncrna:miRNA chromosome:GRCh37:9:96941116:96941202:1 gene:ENSG00000199133 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362263 ncrna:miRNA chromosome:GRCh37:9:96941116:96941202:1 gene:ENSG00000199133 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 96941116	 96941202	+	ENSG00000199133	ENST00000362263	NA	NA	NA	NA	NA	inter
CUST_27805_PI429285431	0.9217287	A	0.9105291	A	1.00779318114652	0	lncRNA	29391-1_{1..719}	n325033|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078306|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078306|-1.0876200|-0.3323762	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325033|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078306|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078306|-1.0876200|-0.3323762	chr20	 22938845	 22939563	-	NA	NA	NA	NA	SSTR4	NA	chr20:22941885-22969422	inter
CUST_27578_PI429285431	3.7110472	P	3.5346446	P	1.13006252701325	0	lncRNA	29156-1_{1..734}	n324779|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206637|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206637|-0.9169830|-0.2570402	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324779|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206637|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206637|-0.9169830|-0.2570402	chr21	 45243549	 45244282	-	NA	NA	NA	NA	NA	"hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90"	NA	inter
CUST_47796_PI429285431	0.9178895	A	0.90374273	A	1.00985402806466	0	lncRNA	51717-1_{1..2521}	"gi|299782576|ref|NR_033856.1| Homo sapiens asparagine synthetase pseudogene (FLJ43315), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|299782576|ref|NR_033856.1| Homo sapiens asparagine synthetase pseudogene (FLJ43315), non-coding RNA"	NA	NA	NA	NA	NA	NR_033856.1	NA	NA	NA	NA	NA	Unknown
CUST_48915_PI429285431	2.0352547	A	1.1279147	A	1.87558415982957	0	lncRNA	52757-1_{1..1594}	hg19_lincRNAsTranscripts_TCONS_l2_00019530 range=chr3:129107866-129112997 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019530 range=chr3:129107866-129112997 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	129107866	129109459	-	NA	NA	NA	NA	C3orf25	"hg19_refFlat_IFT122:range=chr3:129159174-1292391085'pad=0,hg19_refFlat_IFT122:range=chr3:129159174-1292391085'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30chr3:129120164-129122997"	NA	inter
CUST_35046_PI429285431	3.114811	P	2.9358165	P	1.13209458620751	0	lncRNA	36456-1_{1..2103}	n341991|AK056164|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4472|NULL|-1.1487900|-0.3211624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341991|AK056164|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4472|NULL|-1.1487900|-0.3211624	chr12	 97858798	 97860900	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6364_PI429285431	1.1380394	A	1.9088788	A	0.586076379898823	0	lncRNA	6289-1_{1..1931}	"transcript_id ""ENST00000595909.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595909.1"" | genecode_v17"	chr19	 16653557	 16655487	-	ENSG00000269399.1	ENST00000595909.1	CTD-3222D19.7	CTD-3222D19.7-002	CHERP	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50chr19:16643557-16653263"	NA	inter
CUST_14711_PI429285431	0.92401224	A	0.89774364	A	1.01837478245332	0	lncRNA	16375-1_{1..841}	lnc-CHD9-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD9-5:3	chr16	 52307614	 52308454	+	lnc-CHD9-5	lnc-CHD9-5:3	XLOC_011724	linc-CHD9-4	NA	NA	NA	inter
CUST_28172_PI429285431	9.448888	P	9.481041	P	0.977959753830577	0	lncRNA	29798-1_{1..799}	n325450|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323697|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323697|-1.3419700|-0.3689123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325450|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323697|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323697|-1.3419700|-0.3689123	chr2	  6886095	  6886893	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16140_PI429285431	1.5802901	A	2.114756	A	0.690414227580121	0	lncRNA	17846-1_{1..536}	lnc-BRI3BP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BRI3BP-2:1	chr12	125227254	125227789	+	lnc-BRI3BP-2	lnc-BRI3BP-2:1	XLOC_009929	linc-BRI3BP-2	NA	NA	NA	inter
CUST_25436_PI429285431	4.375832	P	4.9022293	P	0.694286343859803	0	lncRNA	26966-1_{1..638}	lnc-XRN2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XRN2-3:1	chr20	 21492591	 21493228	+	lnc-XRN2-3	lnc-XRN2-3:1	ENSG00000258197.1	NKX2-2-AS1	NKX2-2	"hg19_refFlat_NKX2-8:range=chr14:37050107-370515945'pad=0,hg19_refFlat_NKX2-8:range=chr14:37050107-370515945'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_NKX2-2:range=chr20:21492561-214943075'pad=0,hg19_refFlat_NKX2-2:range=chr20:21492561-214943075'pad=0 3'pad=0 strand=- repeatMasking=none,-106.80;hg19_refFlat_NKX2-1:range=chr14:36986483-369885625'pad=0,hg19_refFlat_NKX2-1:range=chr14:36986483-369885625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_NKX2-4:range=chr20:21376549-213780375'pad=0,hg19_refFlat_NKX2-4:range=chr20:21376549-213780375'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_NKX2-1:range=chr14:36986483-369893345'pad=0,hg19_refFlat_NKX2-1:range=chr14:36986483-369893345'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr20:21482591-21494664"	NA	inner
CUST_42338_PI429285431	5.151327	P	5.1473894	P	1.00273306436751	0	lncRNA	44997-1_{1..110}	ENST00000516205 ncrna:snoRNA chromosome:GRCh37:4:132689295:132689404:1 gene:ENSG00000252014 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516205 ncrna:snoRNA chromosome:GRCh37:4:132689295:132689404:1 gene:ENSG00000252014 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	132689295	132689404	+	ENSG00000252014	ENST00000516205	NA	NA	NA	NA	NA	inter
CUST_27846_PI429285431	0.90450925	A	0.9040205	A	1.00033883307546	0	lncRNA	29438-1_{1..675}	n325080|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077867|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077867|-1.3659400|-0.2898393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325080|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077867|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077867|-1.3659400|-0.2898393	chr20	  5362518	  5363192	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5892_PI429285431	5.799315	P	5.932598	P	0.911754297659342	0	lncRNA	5823-1_{1..492}	"transcript_id ""ENST00000573301.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000573301.1"" | genecode_v17"	chr17	 48986998	 48987489	-	ENSG00000262006.1	ENST00000573301.1	RP11-700H6.4	RP11-700H6.4-001	NA	NA	NA	inter
LNCA_21_P0006942	6.686823	P	6.690127	P	0.997712462127147	0	lncRNA	TCONS_00018397	NA	NA	NA	NA	XLOC_008679	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008679), lincRNA [TCONS_00018397]"	chr10:134830919-134830978	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_00018397	TCONS_00018397	chr10	134830919	134830978	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45726_PI429285431	5.8050528	P	6.0471835	P	0.845495686787022	0	lncRNA	50085-9_{24001..27000}	"gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	Chr11	  2653558	  2656557	-	10984	NR_002728.3	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.02;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0,hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_19297_PI429285431	1.1712823	A	1.4738321	A	0.81081810014068	0	lncRNA	20964-1_{1..380}	lnc-SMG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMG1-1:1	chr16	 19078903	 19079282	-	lnc-SMG1-1	lnc-SMG1-1:1	ENSG00000261465.2	RP11-626G11.5	TMC7	NA	chr16:19068903-19075264	inner
CUST_16368_PI429285431	8.105275	P	8.244848	P	0.907787797005465	0	lncRNA	18065-2_{3001..4371}	lnc-SLCO5A1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLCO5A1-3:1	chr8	 70241898	 70243268	-	lnc-SLCO5A1-3	lnc-SLCO5A1-3:1	XLOC_007118	linc-CPA6-5	NA	NA	NA	inter
LNCA_21_P0012108	0.9251503	A	0.90918267	A	1.01112939371041	0	lncRNA	ENST00000438659	NA	NA	NA	NA	XLOC_l2_008450	NA	ENST00000438659	THC2711008	NA	"BROAD Institute lincRNA (XLOC_l2_008450), lincRNA [TCONS_l2_00016094]"	chr2:220768971-220768821	hs|2q35	Agilent_HUMAN_G3V2	ENST00000438659	ENST00000438659	chr2	220768821	220768971	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14836_PI429285431	4.8781166	P	5.4726667	P	0.662250943914422	0	lncRNA	16497-1_{1..743}	lnc-SLC25A32-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A32-2:1	chr8	104457713	104458455	-	lnc-SLC25A32-2	lnc-SLC25A32-2:1	XLOC_007176	linc-SLC25A32-2	DCAF13	NA	chr8:104447713-104455681	inter
CUST_22325_PI429285431	0.89320695	A	0.99192524	A	0.933862279124329	0	lncRNA	23924-1_{1..430}	lnc-RS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RS1-1:1	chrX	 18709557	 18709986	-	lnc-RS1-1	lnc-RS1-1:1	ENSG00000237221.1	PPEF1-AS1	PPEF1	NA	chrX:18709045-18719723	inner
CUST_15271_PI429285431	0.9088664	A	0.9058564	A	1.0020885510041	0	lncRNA	16945-1_{1..903}	lnc-GPR98-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR98-2:1	chr5	 90620894	 90621796	+	lnc-GPR98-2	lnc-GPR98-2:1	XLOC_004468	linc-NR2F1-7	NA	NA	NA	inter
CUST_39713_PI429285431	3.1438866	P	3.2719765	P	0.91504214647766	0	lncRNA	40648-1_{1..1215}	n405620|NR_002781|lncRNA|Homosapiens||RefGeneNoncode|NR_002781||4.6055700|-0.0951056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405620|NR_002781|lncRNA|Homosapiens||RefGeneNoncode|NR_002781||4.6055700|-0.0951056	chr20	 30776948	 30778162	-	NA	NA	NA	NA	PLAGL2	NA	chr20:30780307-30788163	inter
LNCA_21_P0014600	0.9229647	A	1.5185434	A	0.661778946351237	0	lncRNA	XR_110482	XR_110482	XR_110482	NA	NA	LOC100506051	uncharacterized LOC100506051	NA	THC2531780	NA	"PREDICTED: Homo sapiens hypothetical LOC100506051 (LOC100506051), miscRNA [XR_110482]"	chr1:101546924-101546983	hs|1p21.2	Agilent_HUMAN_G3V2	XR_110482	XR_110482	chr1	101546924	101546983	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41348_PI429285431	6.201718	P	6.138811	P	1.04456842500561	0	lncRNA	42419-1_{1..80}	ENST00000577635 ncrna:miRNA chromosome:GRCh37:2:66585381:66585460:-1 gene:ENSG00000264525 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577635 ncrna:miRNA chromosome:GRCh37:2:66585381:66585460:-1 gene:ENSG00000264525 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 66585381	 66585460	-	ENSG00000264525	ENST00000577635	NA	NA	NA	NA	NA	inter
CUST_11990_PI429285431	0.91189915	A	0.89574313	A	1.0112614376273	0	lncRNA	13571-1_{1..701}	lnc-FOXG1-6:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXG1-6:8	chr14	 27133246	 27133946	+	lnc-FOXG1-6	lnc-FOXG1-6:8	XLOC_010776	linc-FOXG1-5	NA	NA	NA	inter
CUST_49389_PI429285431	0.9152807	A	0.90370363	A	1.00805689693644	0	lncRNA	53202-2_{3001..5049}	hg19_lincRNAsTranscripts_TCONS_l2_00022558 range=chr5:142095841-142142773 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022558 range=chr5:142095841-142142773 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	142098841	142100889	+	NA	NA	NA	NA	ARHGAP26	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90chr5:142150292-142152773"	NA	inter
CUST_39096_PI429285431	2.2069314	A	2.1709921	A	1.02522410166758	0	lncRNA	40072-1_{1..766}	n385648|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azq.1||-0.9411030|-0.1513112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385648|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azq.1||-0.9411030|-0.1513112	chr9	102118838	102119603	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3092_PI429285431	1.0846097	A	1.0467553	A	1.02658593515044	0	lncRNA	3071-1_{1..550}	"transcript_id ""ENST00000518278.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518278.1"" | genecode_v17"	chr8	 47752438	 47752987	+	ENSG00000253314.1	ENST00000518278.1	LINC00293	LINC00293-004	NA	NA	NA	inter
CUST_42478_PI429285431	0.9172065	A	0.9126811	A	1.00314169305641	0	lncRNA	45236-1_{1..74}	ENST00000516345 ncrna:snoRNA chromosome:GRCh37:13:97618195:97618268:-1 gene:ENSG00000252154 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516345 ncrna:snoRNA chromosome:GRCh37:13:97618195:97618268:-1 gene:ENSG00000252154 gene_biotype:snoRNA transcript_biotype:snoRNA	chr13	 97618195	 97618268	-	ENSG00000252154	ENST00000516345	NA	NA	OXGR1	NA	chr13:97608195-97628268	inter
CUST_20205_PI429285431	0.89833146	A	0.89518386	A	1.00218413181402	0	lncRNA	21849-1_{1..461}	lnc-UMODL1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UMODL1-5:1	chr21	 43161307	 43161767	+	lnc-UMODL1-5	lnc-UMODL1-5:1	ENSG00000236883.1	AP001615.9	RIPK4	"hg19_refFlat_RIPK4:range=chr21:43160998-431872015'pad=0,hg19_refFlat_RIPK4:range=chr21:43160998-431872015'pad=0 3'pad=0 strand=- repeatMasking=none,-99.50chr21:43159529-43171468"	NA	inner
CUST_49256_PI429285431	0.90207386	A	0.9008513	A	1.00084777317377	0	lncRNA	53075-1_{1..351}	hg19_lincRNAsTranscripts_TCONS_l2_00022946 range=chr5:70513955-70518240 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022946 range=chr5:70513955-70518240 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 70513955	 70514305	-	NA	NA	NA	NA	LOC100652870	NA	chr5:70519357-70519728	inter
CUST_26614_PI429285431	5.51293	P	5.8268595	P	0.804447680826684	0	lncRNA	28117-1_{1..477}	lnc-IFFO1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IFFO1-1:1	chr12	  6642630	  6643106	-	lnc-IFFO1-1	lnc-IFFO1-1:1	ENSG00000255966.1	RP5-940J5.3	NCAPD2	NA	chr12:6632630-6641132	inter
LNCA_21_P0013712	2.4470305	A	3.5118947	P	0.478017652187871	0	lncRNA	ENST00000430816	NA	NA	NA	NA	XLOC_l2_015068	NA	ENST00000430816	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015068), lincRNA [TCONS_l2_00029880]"	chr9:138506142-138507212	hs|9q34.3	Agilent_HUMAN_G3V2	ENST00000430816	ENST00000430816	chr9	138506142	138507212	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48754_PI429285431	15.793427	P	15.7227745	P	1.05019155532628	0	lncRNA	52591-1_{1..415}	hg19_lincRNAsTranscripts_TCONS_l2_00014931 range=chr2:137086872-137087504 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014931 range=chr2:137086872-137087504 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	137086872	137087286	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5134_PI429285431	6.715142	P	6.6458273	P	1.04921817216054	0	lncRNA	5074-1_{1..732}	"transcript_id ""ENST00000500941.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000500941.2"" | genecode_v17"	chr15	 32905934	 32906665	+	ENSG00000244952.2	ENST00000500941.2	RP11-1000B6.5	RP11-1000B6.5-001	ARHGAP11A	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30chr15:32907691-32917312"	NA	inter
CUST_34225_PI429285431	4.589662	P	1.8563195	A	6.64994542175817	0	lncRNA	35735-1_{1..2194}	n341084|BC063022|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3550|NULL|-0.4686870|-0.2701327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341084|BC063022|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3550|NULL|-0.4686870|-0.2701327	chr11	 86511596	 86513789	+	NA	NA	NA	NA	FZD4	"hg19_refFlat_FZD4:range=chr11:86662184-866661275'pad=0,hg19_refFlat_FZD4:range=chr11:86662184-866661275'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20chr11:86656717-86666440"	NA	inner
CUST_17708_PI429285431	0.8979684	A	0.92932206	A	0.97850175260933	0	lncRNA	19439-1_{1..899}	lnc-DLX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLX2-1:1	chr2	173190824	173191722	-	lnc-DLX2-1	lnc-DLX2-1:1	XLOC_002392	linc-DLX2-3	NA	NA	NA	inter
CUST_494_PI429285431	1.7175629	A	1.5458044	A	1.12643065380551	0	lncRNA	485-1_{1..506}	"transcript_id ""ENST00000566904.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566904.1"" | genecode_v17"	chr1	180086275	180086780	-	ENSG00000261817.1	ENST00000566904.1	RP11-502H18.2	RP11-502H18.2-001	CEP350	NA	chr1:180076275-180084015	inter
CUST_17444_PI429285431	3.1080532	P	3.6124508	P	0.704954671260602	0	lncRNA	19168-1_{1..613}	lnc-SOCS6-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOCS6-1:5	chr18	 68019215	 68019827	+	lnc-SOCS6-1	lnc-SOCS6-1:5	XLOC_012709	linc-C18orf55-9	NA	NA	NA	inter
CUST_31310_PI429285431	0.92441344	A	0.9092094	A	1.01059436448915	0	lncRNA	33092-2_{3001..4367}	n337774|BX647455|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|156|NULL|12.0156000|-0.1526221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337774|BX647455|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|156|NULL|12.0156000|-0.1526221	chr1	 24386963	 24388329	-	NA	NA	NA	NA	IL22RA1	NA	chr1:24446261-24448665	inner
CUST_11511_PI429285431	1.8964262	A	2.584662	A	0.620612302050724	0	lncRNA	13081-1_{1..588}	lnc-RP11-88J22.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-88J22.1.1-1:1	chr8	 94178960	 94179547	-	lnc-RP11-88J22.1.1-1	lnc-RP11-88J22.1.1-1:1	XLOC_007158	linc-C8orf83-2	LOC389676	NA	chr8:94168960-94179079	inner
CUST_45630_PI429285431	5.5815315	P	5.7459364	P	0.892296508589328	0	lncRNA	50013-1_{1..2830}	"gi|337298882|ref|NR_038985.1| Homo sapiens uncharacterized LOC100132987 (LOC100132987), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|337298882|ref|NR_038985.1| Homo sapiens uncharacterized LOC100132987 (LOC100132987), non-coding RNA"	Chr10	 80008382	 80011211	+	100132987	NR_038985.1	NA	NA	NA	NA	NA	inter
CUST_23624_PI429285431	2.145965	A	3.390983	P	0.421902634100987	0	lncRNA	25191-1_{1..576}	lnc-EFCAB5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EFCAB5-2:1	chr17	 28114497	 28115072	+	lnc-EFCAB5-2	lnc-EFCAB5-2:1	ENSG00000263657.1	RP11-82O19.1	SSH2	NA	chr17:28104497-28124854	inner
CUST_33506_PI429285431	4.0146728	P	4.974433	P	0.514142365270215	0	lncRNA	35077-1_{1..1145}	n340244|BC039450|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2705|NULL|-1.2213100|-0.1887892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340244|BC039450|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2705|NULL|-1.2213100|-0.1887892	chr4	145564073	145565217	-	NA	NA	NA	NA	HHIP	NA	chr4:145567148-145577174	inner
CUST_4752_PI429285431	1.1783215	A	0.9133954	A	1.201574499007	0	lncRNA	4696-1_{1..822}	"transcript_id ""ENST00000548170.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548170.1"" | genecode_v17"	chr14	 27342339	 27343160	+	ENSG00000257612.1	ENST00000548170.1	RP11-384J4.1	RP11-384J4.1-001	NA	NA	NA	inter
CUST_36016_PI429285431	1.6168978	A	3.7964146	P	0.220749672097097	0	lncRNA	37348-2_{3001..5203}	n344626|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_174|NULL|-1.5760500|-0.3682952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344626|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_174|NULL|-1.5760500|-0.3682952	chr3	176007973	176010175	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40955_PI429285431	4.4126353	P	4.6649747	P	0.839533965858396	0	lncRNA	41631-1_{1..1329}	n410967|NR_038429|lncRNA|Homosapiens||RefGeneNoncode|NR_038429||-1.1211700|-0.2524776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410967|NR_038429|lncRNA|Homosapiens||RefGeneNoncode|NR_038429||-1.1211700|-0.2524776	chr2	  3605975	  3607303	+	NA	NA	NA	NA	RNASEH1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10chr2:3595975-3605940"	NA	inter
CUST_34269_PI429285431	0.9006865	A	0.8959519	A	1.00328716555912	0	lncRNA	35770-1_{1..2062}	n341127|AK127180|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3593|NULL|-0.8526160|-0.2018337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341127|AK127180|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3593|NULL|-0.8526160|-0.2018337	chr11	113276481	113278542	-	NA	NA	NA	NA	ANKK1	NA	chr11:113266481-113271140	inter
CUST_36073_PI429285431	0.9015361	A	2.1009867	A	0.435441072596836	0	lncRNA	37379-1_{1..428}	n344662|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_211|NULL|-1.5596600|-0.0942792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344662|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_211|NULL|-1.5596600|-0.0942792	chr17	 43622979	 43623406	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24520_PI429285431	3.7721343	P	3.7492213	P	1.01600887194569	0	lncRNA	26071-1_{1..625}	lnc-WDR67-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR67-1:1	chr8	124042470	124043094	+	lnc-WDR67-1	lnc-WDR67-1:1	ENSG00000253607.1	RP11-557C18.3	DERL1	"hg19_refFlat_DERL1:range=chr8:124027687-1240543625'pad=0,hg19_refFlat_DERL1:range=chr8:124027687-1240543625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00chr8:124032470-124052991"	NA	inner
CUST_19944_PI429285431	0.92300034	A	0.9035174	A	1.01359614316328	0	lncRNA	21599-1_{1..556}	lnc-ZNF862-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:3	chr7	149480195	149480750	+	lnc-ZNF862-1	lnc-ZNF862-1:3	ENSG00000197558.7	SSPO	SSPO	NA	chr7:149473131-149490379	inner
CUST_34479_PI429285431	12.023966	P	11.640769	P	1.30422881553753	0	lncRNA	35947-1_{1..3000}	n341356|AL359620|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3825|NULL|0.4326960|-0.1549499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341356|AL359620|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3825|NULL|0.4326960|-0.1549499	chr7	148979111	148982110	+	NA	NA	NA	NA	ZNF783	NA	chr7:148969111-148982085	inner
CUST_1937_PI429285431	2.6182406	A	3.200595	P	0.667872955141874	0	lncRNA	1929-1_{1..2138}	"transcript_id ""ENST00000511993.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511993.1"" | genecode_v17"	chr4	150351084	150353221	-	ENSG00000234828.3	ENST00000511993.1	RP11-526A4.1	RP11-526A4.1-001	LOC285423	NA	chr4:150351084-150736980	inter
CUST_11708_PI429285431	2.8429174	A	2.9523482	A	0.926953709491799	0	lncRNA	13286-1_{1..532}	lnc-CCDC37-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC37-3:1	chr3	125965874	125966405	+	lnc-CCDC37-3	lnc-CCDC37-3:1	XLOC_002796	linc-CCDC37-4	NA	NA	NA	inter
CUST_41949_PI429285431	4.073911	P	4.4287586	P	0.781952240783722	0	lncRNA	43714-1_{1..77}	ENST00000578136 ncrna:miRNA chromosome:GRCh37:22:46372758:46372834:-1 gene:ENSG00000265610 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578136 ncrna:miRNA chromosome:GRCh37:22:46372758:46372834:-1 gene:ENSG00000265610 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 46372758	 46372834	-	ENSG00000265610	ENST00000578136	NA	NA	WNT7B	NA	chr22:46362758-46373008	inner
CUST_10363_PI429285431	0.89214194	A	0.8928235	A	0.999527690181033	0	lncRNA	11888-1_{1..254}	lnc-ELTD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELTD1-2:1	chr1	 79493775	 79494028	-	lnc-ELTD1-2	lnc-ELTD1-2:1	XLOC_000877	linc-ELTD1-3	NA	NA	NA	inter
CUST_30258_PI429285431	2.2923274	A	2.8713224	A	0.669429948552608	0	lncRNA	32033-1_{1..218}	n335135|AY243317|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251169|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251169|-1.2698100|-0.3260744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335135|AY243317|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251169|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251169|-1.2698100|-0.3260744	chr18	 55721941	 55722158	+	NA	NA	NA	NA	NEDD4L	NA	chr18:55711941-55843071	inner
CUST_51826_PI429285431	9.995342	P	10.440783	P	0.734359804758913	0	lncRNA	55379-1_{1..1750}	hg19_lincRNAsTranscripts_TCONS_l2_00013068 range=chr19:36802821-36807311 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013068 range=chr19:36802821-36807311 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 36802821	 36804570	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-17.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10"	NA	inter
CUST_40340_PI429285431	2.5734591	P	3.394015	P	0.566223722990282	0	lncRNA	41145-1_{1..3000}	n408909|NR_030778|lncRNA|Homosapiens||RefGeneNoncode|NR_030778||8.6248000|-0.1365787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408909|NR_030778|lncRNA|Homosapiens||RefGeneNoncode|NR_030778||8.6248000|-0.1365787	chr1	 43638000	 43640999	+	NA	NA	NA	NA	WDR65	"hg19_refFlat_EBNA1BP2:range=chr1:43630114-436380925'pad=0,hg19_refFlat_EBNA1BP2:range=chr1:43630114-436380925'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70chr1:43638001-43676549"	NA	inner
CUST_13479_PI429285431	5.7167797	P	6.283347	P	0.675221477851268	0	lncRNA	15117-1_{1..215}	lnc-ARSD-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARSD-2:1	chrX	  2742051	  2742265	-	lnc-ARSD-2	lnc-ARSD-2:1	XLOC_008102	linc-ZBED1-2	GYG2	NA	chrX:2746863-2752169	inter
CUST_18139_PI429285431	2.078496	A	1.8211702	A	1.19526109702892	0	lncRNA	19874-1_{1..311}	lnc-WRN-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WRN-3:3	chr8	 31203806	 31204116	+	lnc-WRN-3	lnc-WRN-3:3	ENSG00000254095	RP11-566H8.2	NA	NA	NA	inter
CUST_673_PI429285431	1.3084048	A	0.90314615	A	1.32432631767049	0	lncRNA	666-1_{1..1746}	"transcript_id ""ENST00000413960.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413960.1"" | genecode_v17"	chr2	  5866581	  5868326	+	ENSG00000236106.1	ENST00000413960.1	AC010729.2	AC010729.2-001	NA	NA	NA	inter
CUST_22270_PI429285431	6.3213415	P	6.4051566	P	0.94355917243914	0	lncRNA	23871-1_{1..180}	lnc-TGIF1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TGIF1-2:6	chr18	  3597174	  3597353	+	lnc-TGIF1-2	lnc-TGIF1-2:6	ENSG00000177337.3	RP11-874J12.2	DLGAP1	NA	chr18:3587174-3607226	inner
CUST_22864_PI429285431	0.9092795	A	0.9057569	A	1.0024446635871	0	lncRNA	24442-1_{1..3000}	lnc-SRGAP3-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRGAP3-1:11	chr3	  9435634	  9438633	-	lnc-SRGAP3-1	lnc-SRGAP3-1:11	ENSG00000206573.4	RP11-58B17.1	LOC100652926	NA	chr3:9435634-9438752	inter
LNCA_21_P0010542	1.2256594	A	2.4535992	A	0.426926671389668	0	lncRNA	ENST00000451023	NA	NA	NA	NA	XLOC_l2_000342	NA	ENST00000451023	THC2670296	NA	"BROAD Institute lincRNA (XLOC_l2_000342), lincRNA [TCONS_l2_00000472]"	chr1:108615205-108615264	hs|1p13.3	Agilent_HUMAN_G3V2	ENST00000451023	ENST00000451023	chr1	108615205	108615264	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42665_PI429285431	2.610414	A	3.462978	A	0.553799631943737	0	lncRNA	45571-1_{1..148}	ENST00000390873 ncrna:snoRNA chromosome:GRCh37:2:55792839:55792986:1 gene:ENSG00000212175 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390873 ncrna:snoRNA chromosome:GRCh37:2:55792839:55792986:1 gene:ENSG00000212175 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 55792839	 55792986	+	ENSG00000212175	ENST00000390873	NA	NA	SMEK2	NA	chr2:55782839-55802986	inner
CUST_6133_PI429285431	0.90928733	A	1.0804429	A	0.888131020928977	0	lncRNA	6059-1_{1..572}	"transcript_id ""ENST00000582893.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582893.1"" | genecode_v17"	chr18	 24920706	 24921277	-	ENSG00000264151.1	ENST00000582893.1	RP11-739N10.1	RP11-739N10.1-005	NA	NA	NA	inter
CUST_40041_PI429285431	3.222332	P	4.2687078	P	0.484182955928346	0	lncRNA	40894-1_{1..2792}	n407232|NR_026700|lncRNA|Homosapiens||RefGeneNoncode|NR_026700||3.8044500|-0.1904389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407232|NR_026700|lncRNA|Homosapiens||RefGeneNoncode|NR_026700||3.8044500|-0.1904389	chr3	 52321835	 52324626	+	NA	NA	NA	NA	WDR82	NA	chr3:52311835-52312659	inter
CUST_17294_PI429285431	0.92627674	A	0.91917956	A	1.00493151037372	0	lncRNA	19013-1_{1..1651}	lnc-TYW5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TYW5-2:1	chr2	200875414	200877064	-	lnc-TYW5-2	lnc-TYW5-2:1	XLOC_002455	linc-C2orf60-2	NA	NA	NA	inter
CUST_5956_PI429285431	3.8122804	P	4.59289	P	0.582120770482309	0	lncRNA	5885-1_{1..561}	"transcript_id ""ENST00000442627.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442627.1"" | genecode_v17"	chr17	 69592479	 69593039	+	ENSG00000225818.1	ENST00000442627.1	AC118653.2	AC118653.2-001	NA	NA	NA	inter
CUST_47563_PI429285431	7.0998588	P	7.304091	P	0.868000512738369	0	lncRNA	51569-1_{1..2308}	"gi|290641470|ref|NR_033349.1| Homo sapiens retinoic acid induced 2 (RAI2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|290641470|ref|NR_033349.1| Homo sapiens retinoic acid induced 2 (RAI2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NR_033349.1	NA	NA	NA	NA	NA	Unknown
CUST_25109_PI429285431	2.8898444	A	2.960964	A	0.951898992416598	0	lncRNA	26646-1_{1..681}	lnc-C5orf42-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C5orf42-3:2	chr5	 36725216	 36725896	-	lnc-C5orf42-3	lnc-C5orf42-3:2	ENSG00000250155.1	CTD-2353F22.1	NA	NA	NA	inter
LNCA_21_P0010320	2.7785232	A	3.191177	P	0.751240215119147	0	lncRNA	TCONS_00029275	NA	NA	NA	NA	XLOC_014057	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014057), lincRNA [TCONS_00029275]"	chr21:34402833-34402774	hs|21q22.11	Agilent_HUMAN_G3V2	TCONS_00029275	TCONS_00029275	chr21	 34402774	 34402833	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18322_PI429285431	0.912167	A	0.91031253	A	1.00128624715916	0	lncRNA	20051-1_{1..2238}	lnc-RP1-241P17.4.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP1-241P17.4.1-2:1	chrX	114832305	114834542	-	lnc-RP1-241P17.4.1-2	lnc-RP1-241P17.4.1-2:1	ENSG00000246653	AL589842.1	PLS3	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-20.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60chrX:114822305-114843648"	NA	inner
CUST_51233_PI429285431	0.9246152	A	0.91434574	A	1.00714364218686	0	lncRNA	54848-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008417 range=chr15:23094342-23105732 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008417 range=chr15:23094342-23105732 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 23094342	 23097341	+	NA	NA	NA	NA	NIPA1	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr15:23084342-23086843"	NA	inter
CUST_22381_PI429285431	6.6311502	P	6.7544475	P	0.918086950188891	0	lncRNA	23972-1_{1..3000}	lnc-HMBS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMBS-1:1	chr11	118952169	118955168	+	lnc-HMBS-1	lnc-HMBS-1:1	ENSG00000160695.8	VPS11	HMBS	NA	chr11:118955587-118962688	inner
CUST_51974_PI429285431	1.145586	A	1.6539977	A	0.702995958290825	0	lncRNA	55515-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00016358 range=chr20:58609422-58621469 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016358 range=chr20:58609422-58621469 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 58612422	 58615421	+	NA	NA	NA	NA	C20orf197	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0,hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70chr20:58630980-58631469"	NA	inter
CUST_7002_PI429285431	0.91409796	A	0.9129034	A	1.00082834878752	0	lncRNA	6949-2_{3001..4364}	"transcript_id ""ENST00000434707.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434707.1"" | genecode_v17"	chr22	 47744319	 47745682	+	ENSG00000224715.1	ENST00000434707.1	CITF22-49D8.1	CITF22-49D8.1-001	NA	NA	NA	inter
LNCA_21_P0009423	5.026006	P	4.9996347	P	1.01844727928034	0	lncRNA	AK054836	NA	AK054836	NA	Hs.586981	XLOC_012701	NA	NA	THC2603033	NA	"BROAD Institute lincRNA (XLOC_012701), lincRNA [TCONS_00026194]"	chr18:59419946-59420005	hs|18q21.33	Agilent_HUMAN_G3V2	AK054836	AK054836	chr18	 59419946	 59420005	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43451_PI429285431	7.638495	P	6.994961	P	1.56215109375188	0	lncRNA	48257-2_{3001..5303}	"gi|371123537|ref|NR_045789.1| Homo sapiens NOP2/Sun domain family, member 4 (NSUN4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371123537|ref|NR_045789.1| Homo sapiens NOP2/Sun domain family, member 4 (NSUN4), transcript variant 4, non-coding RNA"	Chr1	 46808849	 46811151	+	387338	NR_045789.1	NA	NA	NA	"hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-17.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70"	NA	inter
LNCA_21_P0014502	8.88839	P	8.672804	P	1.16117546979282	0	lncRNA	XR_110120	XR_110120	XR_110120	NA	NA	LOC100287803	uncharacterized LOC100287803	NA	THC2569152	NA	"PREDICTED: Homo sapiens hypothetical LOC100287803, transcript variant 1 (LOC100287803), miscRNA [XR_110120]"	chr13:45911432-45911491	hs|13q14.13	Agilent_HUMAN_G3V2	XR_110120	XR_110120	chr13	 45911432	 45911491	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41896_PI429285431	1.7471424	A	2.8900762	A	0.452837770101583	0	lncRNA	43611-1_{1..87}	ENST00000362162 ncrna:miRNA chromosome:GRCh37:3:49057581:49057667:-1 gene:ENSG00000199032 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362162 ncrna:miRNA chromosome:GRCh37:3:49057581:49057667:-1 gene:ENSG00000199032 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 49057581	 49057667	-	ENSG00000199032	ENST00000362162	NA	NA	QRICH1	NA	chr3:49067142-49067667	inner
CUST_40592_PI429285431	6.420636	P	5.784074	P	1.55462001985981	0	lncRNA	41339-2_{3001..3559}	n410054|NR_036492|lncRNA|Homosapiens||RefGeneNoncode|NR_036492||5.0948500|-0.2336017	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410054|NR_036492|lncRNA|Homosapiens||RefGeneNoncode|NR_036492||5.0948500|-0.2336017	chr1	160249598	160250156	-	NA	NA	NA	NA	COPA	NA	chr1:160258377-160264941	inter
CUST_37581_PI429285431	1.171167	A	1.3786306	A	0.866058509811896	0	lncRNA	38684-1_{1..3000}	n346058|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1608|NULL|-1.3006800|-0.3158944	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346058|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1608|NULL|-1.3006800|-0.3158944	chr6	138141786	138144785	-	NA	NA	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80"	NA	inter
CUST_2227_PI429285431	0.9224223	A	0.9076482	A	1.01029324041725	0	lncRNA	2219-1_{1..557}	"transcript_id ""ENST00000510946.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510946.1"" | genecode_v17"	chr5	 85649621	 85650177	+	ENSG00000248363.1	ENST00000510946.1	CTC-261N6.1	CTC-261N6.1-002	NA	NA	NA	inter
LNCA_21_P0011180	1.0147643	A	0.9432274	A	1.05083554045572	0	lncRNA	TCONS_l2_00007086	NA	NA	NA	NA	XLOC_l2_003908	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003908), lincRNA [TCONS_l2_00007086]"	chr13:25325825-25325766	hs|13q12.12	Agilent_HUMAN_G3V2	TCONS_l2_00007086	TCONS_l2_00007086	chr13	 25325766	 25325825	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9504_PI429285431	7.035992	P	7.045743	P	0.993263911685837	0	lncRNA	11014-1_{1..268}	lnc-GABARAPL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GABARAPL1-1:1	chr12	 10412867	 10413134	+	lnc-GABARAPL1-1	lnc-GABARAPL1-1:1	XLOC_009659	linc-KLRD1	NA	NA	NA	inter
CUST_24481_PI429285431	1.5117353	A	1.9052107	A	0.761293465440155	0	lncRNA	26033-1_{1..575}	lnc-TMEM185B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM185B-1:1	chr2	120973916	120974490	-	lnc-TMEM185B-1	lnc-TMEM185B-1:1	ENSG00000224789.1	AC012363.4	TMEM185B	NA	chr2:120972914-120980984	inter
CUST_40037_PI429285431	1.9042783	A	1.6742955	A	1.17282096662273	0	lncRNA	40892-2_{3001..6000}	n407230|NR_026698|lncRNA|Homosapiens||RefGeneNoncode|NR_026698||8.1665200|-0.3248800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407230|NR_026698|lncRNA|Homosapiens||RefGeneNoncode|NR_026698||8.1665200|-0.3248800	chr3	122143747	122146746	-	NA	NA	NA	NA	KPNA1	NA	chr3:122140748-122233786	inter
CUST_41381_PI429285431	3.887795	P	4.1262345	P	0.847661695174738	0	lncRNA	42478-1_{1..80}	ENST00000580204 ncrna:miRNA chromosome:GRCh37:2:213790981:213791060:1 gene:ENSG00000266354 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580204 ncrna:miRNA chromosome:GRCh37:2:213790981:213791060:1 gene:ENSG00000266354 gene_biotype:miRNA transcript_biotype:miRNA	chr2	213790981	213791060	+	ENSG00000266354	ENST00000580204	NA	NA	NA	NA	NA	inter
CUST_50383_PI429285431	1.253979	A	1.0613691	A	1.14282927634935	0	lncRNA	54092-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030613 range=chrX:135886490-135930734 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030613 range=chrX:135886490-135930734 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	135886490	135889489	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RAB28:range=chr4:13371500-134857745'pad=0,hg19_refFlat_RAB28:range=chr4:13371500-134857745'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_RAB28:range=chr4:13373450-134857745'pad=0,hg19_refFlat_RAB28:range=chr4:13373450-134857745'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_RAB28:range=chr4:13370182-134857745'pad=0,hg19_refFlat_RAB28:range=chr4:13370182-134857745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10"	NA	inter
CUST_19693_PI429285431	6.9564314	P	5.088107	P	3.65108283321335	0	lncRNA	21351-1_{1..309}	lnc-HLA-DRB1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HLA-DRB1-3:1	chr6	 32630131	 32630439	-	lnc-HLA-DRB1-3	lnc-HLA-DRB1-3:1	ENSG00000241287.1	XXbac-BPG254F23.6	HLA-DQB1	NA	chr6:32627657-32634466	inner
CUST_38855_PI429285431	1.2572036	A	1.0869191	A	1.12528036851856	0	lncRNA	39845-1_{1..2792}	n384705|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kkf.2||-0.9998240|-0.3319504	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384705|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kkf.2||-0.9998240|-0.3319504	chr5	 92745064	 92747855	-	NA	NA	NA	NA	NR2F1	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40chr5:92919043-92927003"	NA	inter
CUST_21221_PI429285431	0.91033036	A	0.9231317	A	0.991166038044394	0	lncRNA	22846-1_{1..591}	lnc-TMEM98-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM98-2:1	chr17	 31205318	 31205908	+	lnc-TMEM98-2	lnc-TMEM98-2:1	ENSG00000226377.1	AC084809.2	MYO1D	"hg19_refFlat_MYO1D:range=chr17:30821777-312038905'pad=0,hg19_refFlat_MYO1D:range=chr17:30821777-312038905'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00chr17:31195318-31203902"	NA	inter
CUST_25112_PI429285431	0.9094869	A	0.9215006	A	0.991707313325523	0	lncRNA	26650-1_{1..1963}	lnc-LMX1A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-LMX1A-2:1	chr1	164743666	164745628	-	lnc-LMX1A-2	lnc-LMX1A-2:1	ENSG00000233693.1	RP11-506O24.1	PBX1	NA	chr1:164733666-164753878	inner
LNCA_21_P0014831	2.5351763	A	2.580066	A	0.969363925981564	0	lncRNA	ENST00000375625	XR_132683	XR_132683	NA	Hs.722862	LOC401589	NA	ENST00000375625	THC2485612	NA	"PREDICTED: Homo sapiens hypothetical LOC401589 (LOC401589), miscRNA [XR_132683]"	chrX:51944311-51944370	hs|Xp11.22	Agilent_HUMAN_G3V2	ENST00000375625	ENST00000375625	chrX	 51944311	 51944370	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46995_PI429285431	1.722281	A	1.5022669	A	1.16474496990248	0	lncRNA	51094-1_{1..761}	"gi|380692332|ref|NR_046458.1| Homo sapiens uncharacterized LOC284260 (LOC284260), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">gi|380692332|ref|NR_046458.1| Homo sapiens uncharacterized LOC284260 (LOC284260), transcript variant 6, non-coding RNA"	Chr18	 39766633	 39767393	+	284260	NR_046458.1	NA	NA	NA	NA	NA	inter
CUST_7364_PI429285431	0.8973469	A	0.89910877	A	0.998779510181253	0	lncRNA	9010-1_{1..3000}	lnc-RP11-173D9.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-173D9.3.1-1:1	chr14	 35579776	 35582775	+	lnc-RP11-173D9.3.1-1	lnc-RP11-173D9.3.1-1:1	ENSG00000247658	ENST00000502168	PPP2R3C	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40chr14:35569776-35589932"	NA	inner
CUST_34583_PI429285431	0.89644396	A	0.9215692	A	0.982735283835081	0	lncRNA	36041-1_{1..435}	n341467|AF147373|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3937|NULL|-1.1128500|-0.2109058	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341467|AF147373|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3937|NULL|-1.1128500|-0.2109058	chr8	 28156120	 28156554	-	NA	NA	NA	NA	PNOC	NA	chr8:28157125-28166555	inter
CUST_3839_PI429285431	0.9037327	A	0.9196432	A	0.989032270749032	0	lncRNA	3806-1_{1..297}	"transcript_id ""ENST00000439421.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439421.2"" | genecode_v17"	chr10	132237331	132237627	+	ENSG00000236303.2	ENST00000439421.2	RP11-540N6.1	RP11-540N6.1-001	NA	NA	NA	inter
CUST_36685_PI429285431	3.1420631	P	3.5752811	P	0.740607980181892	0	lncRNA	37868-1_{1..503}	n345174|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_723|NULL|-1.3155300|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345174|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_723|NULL|-1.3155300|-1.0000000	chr12	 38447468	 38447970	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13276_PI429285431	4.2009277	P	4.213933	P	0.991025922545224	0	lncRNA	14907-1_{1..710}	lnc-LSR-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LSR-1:3	chr19	 35706538	 35707247	+	lnc-LSR-1	lnc-LSR-1:3	XLOC_013049	linc-LSR	FAM187B	NA	chr19:35715704-35716774	inter
CUST_29215_PI429285431	0.9161994	A	0.9084275	A	1.00540160692834	0	lncRNA	30964-1_{1..1389}	n326738|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097858|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097858|1.1586300|-0.0987022	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326738|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097858|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097858|1.1586300|-0.0987022	chr1	   842112	   843500	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_40405_PI429285431	1.7073792	A	1.5456072	A	1.11866029672462	0	lncRNA	41192-1_{1..3000}	n409269|NR_033441|lncRNA|Homosapiens||RefGeneNoncode|NR_033441||6.6855000|-0.2982223	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409269|NR_033441|lncRNA|Homosapiens||RefGeneNoncode|NR_033441||6.6855000|-0.2982223	chr6	114257319	114260318	-	NA	NA	NA	NA	HDAC2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10chr6:114257320-114292359"	NA	inter
CUST_22999_PI429285431	1.5156733	A	1.9083333	A	0.761723864194683	0	lncRNA	24573-1_{1..506}	lnc-NAPG-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NAPG-4:2	chr18	 10908334	 10908839	+	lnc-NAPG-4	lnc-NAPG-4:2	ENSG00000263952.1	RP11-513M1.1	FAM38B	NA	chr18:10898334-10918781	inner
CUST_16056_PI429285431	3.581337	P	3.749363	P	0.890059692606428	0	lncRNA	17756-1_{1..2168}	lnc-SUPT3H-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUPT3H-1:2	chr6	 45544322	 45546489	-	lnc-SUPT3H-1	lnc-SUPT3H-1:2	XLOC_005737	linc-SUPT3H	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10"	NA	inter
CUST_44429_PI429285431	0.9282914	A	0.9226899	A	1.00389021123623	0	lncRNA	49041-1_{1..2844}	"gi|310119449|ref|XR_109837.1| PREDICTED: Homo sapiens uncharacterized LOC100507639 (LOC100507639), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310119449|ref|XR_109837.1| PREDICTED: Homo sapiens uncharacterized LOC100507639 (LOC100507639), misc_RNA"	Chr4	142242255	142245098	-	100507639	XR_109837.2	NA	NA	NA	NA	NA	inter
CUST_24759_PI429285431	4.5720606	P	4.5413947	P	1.02148349968931	0	lncRNA	26303-1_{1..302}	lnc-NUPL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-NUPL1-2:1	chr13	 25784239	 25784540	+	lnc-NUPL1-2	lnc-NUPL1-2:1	ENSG00000225105.1	RP11-165I9.6	NA	NA	NA	inter
CUST_19057_PI429285431	3.4851027	P	3.7545426	P	0.829641576488491	0	lncRNA	20748-1_{1..475}	lnc-PLCD1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLCD1-1:7	chr3	 37903192	 37903666	-	lnc-PLCD1-1	lnc-PLCD1-1:7	ENSG00000235257	AC093415.2	CTDSPL	"hg19_refFlat_ITGA9:range=chr3:37493866-378604805'pad=0,hg19_refFlat_ITGA9:range=chr3:37493866-378604805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60chr3:37903669-37913211"	NA	inter
CUST_12449_PI429285431	1.2928456	A	1.5695689	A	0.825463712173981	0	lncRNA	14061-1_{1..645}	lnc-NT5DC1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NT5DC1-3:1	chr6	115807259	115807903	+	lnc-NT5DC1-3	lnc-NT5DC1-3:1	XLOC_005443	linc-NT5DC1-1	NA	NA	NA	inter
CUST_36137_PI429285431	1.0498978	A	0.91670334	A	1.09671940477698	0	lncRNA	37422-1_{1..3000}	n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	chr8	128089803	128092802	-	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00"	NA	inter
CUST_36621_PI429285431	2.3275433	A	1.2424232	A	2.12155208818198	0	lncRNA	37815-1_{1..512}	n345118|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_667|NULL|-1.2703500|-0.1037003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345118|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_667|NULL|-1.2703500|-0.1037003	chr10	 74008147	 74008658	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18584_PI429285431	1.8062212	A	1.4989159	A	1.23739430568562	0	lncRNA	20291-1_{1..873}	lnc-EIF2S2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF2S2-1:1	chr20	 32605233	 32606105	-	lnc-EIF2S2-1	lnc-EIF2S2-1:1	ENSG00000228386	RP5-1125A11.4	RALY	NA	chr20:32595233-32615555	inner
CUST_42157_PI429285431	2.154865	A	3.256687	A	0.465927697357819	0	lncRNA	44191-1_{1..78}	ENST00000581495 ncrna:miRNA chromosome:GRCh37:2:103048749:103048826:1 gene:ENSG00000264764 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581495 ncrna:miRNA chromosome:GRCh37:2:103048749:103048826:1 gene:ENSG00000264764 gene_biotype:miRNA transcript_biotype:miRNA	chr2	103048749	103048826	+	ENSG00000264764	ENST00000581495	NA	NA	IL18RAP	NA	chr2:103038749-103058826	inner
CUST_26272_PI429285431	3.419198	P	3.0649128	A	1.27835204998716	0	lncRNA	27778-1_{1..567}	lnc-SCN2A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SCN2A-2:1	chr2	165705352	165705918	+	lnc-SCN2A-2	lnc-SCN2A-2:1	ENSG00000233255.1	AC019181.2	COBLL1	NA	chr2:165695352-165697928	inter
CUST_33391_PI429285431	0.97270757	A	0.92513514	A	1.03352438632707	0	lncRNA	34969-1_{1..740}	n340110|AF143880|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2569|NULL|-1.0396800|-0.3283872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340110|AF143880|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2569|NULL|-1.0396800|-0.3283872	chr10	 97152265	 97153004	-	NA	NA	NA	NA	SORBS1	NA	chr10:97142265-97162995	inner
LNCA_21_P0014218	1.0631495	A	0.9219754	A	1.10280223782122	0	lncRNA	XR_108901	XR_108901	XR_108901	NA	NA	LOC100507186	uncharacterized LOC100507186	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507186 (LOC100507186), miscRNA [XR_108901]"	chr8:80714987-80715046	hs|8q21.13	Agilent_HUMAN_G3V2	XR_108901	XR_108901	chr8	 80714987	 80715046	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30517_PI429285431	9.28904	P	9.363388	P	0.949771255960198	0	lncRNA	32297-1_{1..376}	n335674|CR614960|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000294155|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000294155|-1.1175600|-0.1839433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335674|CR614960|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000294155|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000294155|-1.1175600|-0.1839433	chr3	 11597543	 11597918	-	NA	NA	NA	NA	ATG7	NA	chr3:11587543-11599139	inner
CUST_17580_PI429285431	3.887281	P	3.8841448	P	1.0021762127087	0	lncRNA	19305-1_{1..304}	lnc-C10orf107-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf107-1:2	chr10	 63253054	 63253357	+	lnc-C10orf107-1	lnc-C10orf107-1:2	XLOC_008495	linc-C10orf107-1	NA	NA	NA	inter
LNCA_21_P0004862	0.94406223	A	1.8266561	A	0.542391370368555	0	lncRNA	AK125456	NA	AK125456	NA	Hs.640203	XLOC_005214	NA	NA	THC2509702	NA	"BROAD Institute lincRNA (XLOC_005214), lincRNA [TCONS_00011748]"	chr6:58189339-58189280	hs|6p11.2	Agilent_HUMAN_G3V2	AK125456	AK125456	chr6	 58189280	 58189339	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51331_PI429285431	0.9097051	A	0.90593386	A	1.00261744391387	0	lncRNA	54933-1_{1..1783}	hg19_lincRNAsTranscripts_TCONS_l2_00009129 range=chr15:59698610-59702722 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009129 range=chr15:59698610-59702722 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 59698610	 59700392	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70"	NA	inter
CUST_15784_PI429285431	2.2044048	A	1.6445096	A	1.47416212757496	0	lncRNA	17474-1_{1..214}	lnc-FPGT-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FPGT-6:1	chr1	 73023544	 73023757	+	lnc-FPGT-6	lnc-FPGT-6:1	XLOC_000253	linc-FPGT-5	NA	NA	NA	inter
CUST_45949_PI429285431	4.4449687	P	3.5439715	P	1.86735626563946	0	lncRNA	50247-1_{1..3000}	"gi|242247112|ref|NR_027946.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant alpha, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|242247112|ref|NR_027946.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant alpha, non-coding RNA"	Chr12	  1100404	  1103403	+	23085	NR_027946.1	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10"	NA	inter
CUST_50495_PI429285431	2.8331528	A	3.1266215	A	0.815937922738223	0	lncRNA	54191-1_{1..1291}	hg19_lincRNAsTranscripts_TCONS_l2_00030310 range=chrX:102156591-102161770 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030310 range=chrX:102156591-102161770 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	102156591	102157881	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27826_PI429285431	2.1689992	A	1.6912138	A	1.39260431622611	0	lncRNA	29412-1_{1..455}	n325054|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000127627|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000127627|-1.1830000|-0.4678094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325054|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000127627|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000127627|-1.1830000|-0.4678094	chr20	 18252298	 18252752	-	NA	NA	NA	NA	ZNF133	NA	chr20:18269121-18297640	inner
CUST_3097_PI429285431	1.0537655	A	0.90483636	A	1.10874618463435	0	lncRNA	3076-1_{1..594}	"transcript_id ""ENST00000518620.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518620.1"" | genecode_v17"	chr8	 49569820	 49570413	-	ENSG00000253892.1	ENST00000518620.1	RP11-770E5.2	RP11-770E5.2-001	NA	NA	NA	inter
CUST_36071_PI429285431	0.9191544	A	0.9149127	A	1.00294444879464	0	lncRNA	37377-1_{1..216}	n344660|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_209|NULL|-1.3020700|-0.2783969	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344660|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_209|NULL|-1.3020700|-0.2783969	chr12	 97211552	 97211767	-	NA	NA	NA	NA	C12orf63	NA	chr12:97201552-97216602	inter
CUST_28104_PI429285431	1.7682936	A	0.9079405	A	1.8154825961172	0	lncRNA	29726-1_{1..2098}	n325376|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324015|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324015|-1.2081900|-0.3174616	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325376|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324015|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324015|-1.2081900|-0.3174616	chr2	 21763810	 21765907	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002327	2.3213897	A	2.3773427	A	0.961958792768483	0	lncRNA	XR_108408	XR_108408	XR_108408	NA	Hs.333185	LOC100506923	uncharacterized LOC100506923	NA	THC2667101	NA	"PREDICTED: Homo sapiens hypothetical LOC100506923 (LOC100506923), miscRNA [XR_108408]"	chr2:186084926-186084985	hs|2q32.1	Agilent_HUMAN_G3V2	XR_108408	XR_108408	chr2	186084926	186084985	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20525_PI429285431	0.90500826	A	0.89863753	A	1.00442561778605	0	lncRNA	22167-1_{1..2364}	lnc-PDGFB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDGFB-2:1	chr22	 39535619	 39537982	-	lnc-PDGFB-2	lnc-PDGFB-2:1	ENSG00000233899.1	RP4-742C19.8	CBX7	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00chr22:39525619-39547189"	NA	inner
CUST_15267_PI429285431	1.1235228	A	1.4250174	A	0.811411356649498	0	lncRNA	16940-1_{1..395}	lnc-SMC1A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMC1A-2:1	chrX	 53393313	 53393707	-	lnc-SMC1A-2	lnc-SMC1A-2:1	XLOC_008172	linc-IQSEC2	SMC1A	NA	chrX:53401070-53403518	inter
CUST_50023_PI429285431	0.91391575	A	0.9018796	A	1.00837772177145	0	lncRNA	53759-1_{1..567}	hg19_lincRNAsTranscripts_TCONS_l2_00028089 range=chr8:8100281-8102380 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028089 range=chr8:8100281-8102380 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	  8100281	  8100847	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1679_PI429285431	5.2548075	P	5.7559476	P	0.706548205770028	0	lncRNA	1663-1_{1..466}	"transcript_id ""ENST00000505702.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505702.1"" | genecode_v17"	chr4	  3634756	  3635221	+	ENSG00000250681.1	ENST00000505702.1	RP3-368B9.2	RP3-368B9.2-001	NA	NA	NA	inter
CUST_45316_PI429285431	0.90325105	A	0.89688	A	1.0044258405748	0	lncRNA	49758-1_{1..1270}	"gi|374253788|ref|NR_046204.1| Homo sapiens uncharacterized LOC401497 (LOC401497), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374253788|ref|NR_046204.1| Homo sapiens uncharacterized LOC401497 (LOC401497), non-coding RNA"	Chr9	 30388933	 30390202	-	401497	NR_046204.1	NA	NA	NA	NA	NA	inter
CUST_1264_PI429285431	3.1267252	P	3.319589	P	0.874867354299874	0	lncRNA	1256-1_{1..1104}	"transcript_id ""ENST00000565664.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565664.1"" | genecode_v17"	chr2	235131482	235132585	+	ENSG00000261298.1	ENST00000565664.1	RP11-309M7.1	RP11-309M7.1-002	NA	NA	NA	inter
CUST_29193_PI429285431	8.227089	P	8.426771	P	0.870742471900249	0	lncRNA	30939-1_{1..548}	n326709|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000004910|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000004910|-0.0096520|-0.2801429	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326709|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000004910|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000004910|-0.0096520|-0.2801429	chr1	  9150913	  9151460	-	NA	NA	NA	NA	GPR157	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20chr1:9164476-9189229"	NA	inner
CUST_6336_PI429285431	1.8489618	A	1.9607794	A	0.925421421714609	0	lncRNA	6259-1_{1..472}	"transcript_id ""ENST00000440004.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440004.1"" | genecode_v17"	chr19	 12305830	 12306301	+	ENSG00000234773.2	ENST00000440004.1	CTD-2666L21.1	CTD-2666L21.1-002	ZNF136	NA	chr19:12295830-12300064	inter
CUST_17169_PI429285431	1.5599145	A	1.2543757	A	1.23588011225263	0	lncRNA	18879-1_{1..340}	lnc-CMPK2-13:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMPK2-13:1	chr2	  5831877	  5832216	-	lnc-CMPK2-13	lnc-CMPK2-13:1	XLOC_001958	linc-RNASEH1-2	SOX11	NA	chr2:5832799-5841517	inter
CUST_19384_PI429285431	0.8969311	A	0.89116156	A	1.00400714761649	0	lncRNA	21046-1_{1..577}	lnc-AL117340.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL117340.1-1:1	chr10	 31647037	 31647613	-	lnc-AL117340.1-1	lnc-AL117340.1-1:1	ENSG00000259552.1	RP11-192P3.4	ZEB1	NA	chr10:31637037-31657519	inner
CUST_42277_PI429285431	1.4916543	A	1.3233368	A	1.12374718361656	0	lncRNA	44889-1_{1..123}	ENST00000364646 ncrna:snoRNA chromosome:GRCh37:4:177019314:177019436:1 gene:ENSG00000201516 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364646 ncrna:snoRNA chromosome:GRCh37:4:177019314:177019436:1 gene:ENSG00000201516 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	177019314	177019436	+	ENSG00000201516	ENST00000364646	NA	NA	WDR17	NA	chr4:177009314-177029436	inner
CUST_9348_PI429285431	0.9028712	A	0.8948688	A	1.00556225320341	0	lncRNA	10853-2_{3001..6000}	lnc-HMBOX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HMBOX1-1:1	chr8	 28924912	 28927911	+	lnc-HMBOX1-1	lnc-HMBOX1-1:1	XLOC_006753	linc-LEPROTL1-6	KIF13B	NA	chr8:28924795-28932437	inter
CUST_32604_PI429285431	4.300693	P	4.3626747	P	0.957947369318513	0	lncRNA	34264-1_{1..1221}	n339224|CR619343|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1656|NULL|-1.1548800|-0.0420153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339224|CR619343|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1656|NULL|-1.1548800|-0.0420153	chr2	242497867	242499087	-	NA	NA	NA	NA	BOK	"hg19_refFlat_BOK:range=chr2:242498899-2425118375'pad=0,hg19_refFlat_BOK:range=chr2:242498899-2425118375'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.70chr2:242498192-242509088"	NA	inner
CUST_34306_PI429285431	0.9132139	A	0.91522837	A	0.998604650206232	0	lncRNA	35801-1_{1..2004}	n341166|AK097578|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3632|NULL|5.3641300|-0.0568240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341166|AK097578|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3632|NULL|5.3641300|-0.0568240	chr11	133792470	133794473	-	NA	NA	NA	NA	IGSF9B	NA	chr11:133785185-133817995	inner
CUST_5066_PI429285431	0.92583644	A	0.9697517	A	0.97001888495102	0	lncRNA	5006-2_{3001..3816}	"transcript_id ""ENST00000564585.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564585.1"" | genecode_v17"	chr14	105130457	105131272	-	ENSG00000260792.1	ENST00000564585.1	RP11-982M15.8	RP11-982M15.8-001	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20"	NA	inter
CUST_4196_PI429285431	0.9100726	A	1.7865696	A	0.54468838182175	0	lncRNA	4155-1_{1..576}	"transcript_id ""ENST00000456299.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456299.2"" | genecode_v17"	chr12	 24484220	 24484795	-	ENSG00000255864.1	ENST00000456299.2	RP11-444D3.1	RP11-444D3.1-002	SOX5	NA	chr12:24474220-24715380	inner
CUST_18482_PI429285431	7.534577	P	6.8635926	P	1.59215898129654	0	lncRNA	20202-1_{1..709}	lnc-GTF2F2-2:22	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2F2-2:22	chr13	 45965167	 45965875	+	lnc-GTF2F2-2	lnc-GTF2F2-2:22	ENSG00000170919	XXyac-R12DG2.2	SLC25A30	"hg19_refFlat_RCN1:range=chr11:32112743-321260185'pad=0,hg19_refFlat_RCN1:range=chr11:32112743-321260185'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60chr13:45967451-45975292"	NA	inter
CUST_29576_PI429285431	1.9624417	A	2.7136283	A	0.594114704012017	0	lncRNA	31336-1_{1..408}	n333077|AF277724|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076011|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076011|1.8292600|-0.2669007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333077|AF277724|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076011|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076011|1.8292600|-0.2669007	chr5	137654894	137655301	-	NA	NA	NA	NA	CDC25C	NA	chr5:137644894-137667516	inner
CUST_17515_PI429285431	1.352351	A	0.9052571	A	1.36329133628412	0	lncRNA	19240-1_{1..978}	lnc-FZD10-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FZD10-3:3	chr12	130443911	130444888	+	lnc-FZD10-3	lnc-FZD10-3:3	XLOC_009952	linc-FZD10-2	NA	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10"	NA	inter
CUST_31336_PI429285431	4.0626225	P	4.349964	P	0.819410622185808	0	lncRNA	33118-1_{1..2297}	n337802|AK091319|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|184|NULL|-1.1993900|-0.3953064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337802|AK091319|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|184|NULL|-1.1993900|-0.3953064	chrX	102851535	102853831	+	NA	NA	NA	NA	TCEAL4	NA	chrX:102841535-102842657	inter
CUST_6087_PI429285431	2.197551	A	2.1485999	A	1.03451251622933	0	lncRNA	6012-1_{1..441}	"transcript_id ""ENST00000591431.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591431.1"" | genecode_v17"	chr18	 11490223	 11490663	+	ENSG00000267252.1	ENST00000591431.1	RP11-712C7.1	RP11-712C7.1-005	NA	NA	NA	inter
CUST_1614_PI429285431	0.8970119	A	0.8899018	A	1.00494051003954	0	lncRNA	1600-1_{1..406}	"transcript_id ""ENST00000457815.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457815.1"" | genecode_v17"	chr3	193809350	193809755	+	ENSG00000229964.1	ENST00000457815.1	RP11-135A1.3	RP11-135A1.3-001	NA	NA	NA	inter
CUST_31477_PI429285431	5.0549517	P	5.445872	P	0.762642956782493	0	lncRNA	33243-1_{1..283}	n337956|U84511|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|341|NULL|-1.0870200|-0.1522607	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337956|U84511|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|341|NULL|-1.0870200|-0.1522607	chr22	 19948946	 19949228	-	NA	NA	NA	NA	COMT	NA	chr22:19938946-19957498	inner
CUST_5736_PI429285431	0.89096904	A	0.90256363	A	0.991995451024814	0	lncRNA	5660-1_{1..1885}	"transcript_id ""ENST00000571192.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000571192.1"" | genecode_v17"	chr17	 14198829	 14200713	-	ENSG00000262786.1	ENST00000571192.1	RP11-214O1.1	RP11-214O1.1-001	HS3ST3B1	NA	chr17:14204506-14210917	inter
CUST_7353_PI429285431	5.421859	P	5.676889	P	0.837969709396531	0	lncRNA	8999-1_{1..1261}	lnc-C15orf40-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf40-2:1	chr15	 83654539	 83655799	-	lnc-C15orf40-2	lnc-C15orf40-2:1	ENSG00000245763	XLOC_011554	C15orf40	NA	chr15:83657715-83664620	inter
LNCA_21_P0014594	4.7259965	P	4.894501	P	0.889764534634441	0	lncRNA	XR_110451	XR_110451	XR_110451	NA	NA	LOC100505820	uncharacterized LOC100505820	ENST00000411906	THC2647765	NA	"PREDICTED: Homo sapiens hypothetical LOC100505820 (LOC100505820), miscRNA [XR_110451]"	chr10:105222200-105222259	hs|10q24.33	Agilent_HUMAN_G3V2	XR_110451	XR_110451	chr10	105222200	105222259	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36064_PI429285431	6.101454	P	6.2980576	P	0.872602432170561	0	lncRNA	37374-2_{3001..3551}	n344656|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_204|NULL|-1.5598300|-0.2418167	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344656|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_204|NULL|-1.5598300|-0.2418167	chr22	 27067942	 27068492	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36703_PI429285431	0.91083574	A	1.2463583	A	0.792497033481866	0	lncRNA	37884-1_{1..644}	n345191|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_740|NULL|-1.3176100|-0.2841983	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345191|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_740|NULL|-1.3176100|-0.2841983	chr12	102601068	102601711	+	NA	NA	NA	NA	C12orf48	NA	chr12:102591068-102591298	inter
CUST_19117_PI429285431	5.870776	P	1.4567714	A	21.3180651735251	0	lncRNA	20798-3_{6001..7282}	lnc-PDZD8-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-PDZD8-3:1	NA	     6000	     7281	NA	NA	NA	NA	NA	NA	"hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-20.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30"	NA	Unknown
CUST_46447_PI429285431	1.0142423	A	1.6249983	A	0.65485345617426	0	lncRNA	50654-1_{1..723}	"gi|338827634|ref|NR_040061.1| Homo sapiens uncharacterized LOC100131089 (LOC100131089), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338827634|ref|NR_040061.1| Homo sapiens uncharacterized LOC100131089 (LOC100131089), transcript variant 3, non-coding RNA"	Chr15	 40331512	 40332234	+	100131089	NR_040061.1	NA	NA	NA	NA	NA	inter
CUST_34308_PI429285431	5.80586	P	5.7759066	P	1.0209791468757	0	lncRNA	35803-1_{1..822}	n341168|AK123632|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3634|NULL|-0.9300690|-0.3613460	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341168|AK123632|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3634|NULL|-0.9300690|-0.3613460	chr22	 37099962	 37100783	+	NA	NA	NA	NA	CACNG2	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40chr22:37089962-37098690"	NA	inter
CUST_4427_PI429285431	0.9140705	A	0.9063578	A	1.00536035181046	0	lncRNA	4377-1_{1..366}	"transcript_id ""ENST00000552718.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552718.1"" | genecode_v17"	chr12	117136141	117136506	+	ENSG00000257654.1	ENST00000552718.1	RP11-497G19.2	RP11-497G19.2-001	NA	NA	NA	inter
CUST_49146_PI429285431	7.6580977	P	6.3958144	P	2.398750820668	0	lncRNA	52972-1_{1..536}	hg19_lincRNAsTranscripts_TCONS_l2_00021265 range=chr4:120331562-120340231 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021265 range=chr4:120331562-120340231 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	120331562	120332097	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009591	0.9242381	A	1.118771	A	0.87385577757329	0	lncRNA	TCONS_00026578	NA	NA	NA	NA	XLOC_012895	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012895), lincRNA [TCONS_00026578]"	chr18:74528854-74528795	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026578	TCONS_00026578	chr18	 74528795	 74528854	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001360	7.619403	P	7.8740873	P	0.838170528579059	0	lncRNA	TCONS_00001086	NA	NA	NA	NA	XLOC_000329	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000329), lincRNA [TCONS_00001086]"	chr1:106995051-106995110	hs|1p21.1	Agilent_HUMAN_G3V2	TCONS_00001086	TCONS_00001086	chr1	106995051	106995110	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20212_PI429285431	0.9258065	A	0.91375875	A	1.00838582967248	0	lncRNA	21856-1_{1..697}	lnc-NSRP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NSRP1-1:1	chr17	 28533009	 28533705	+	lnc-NSRP1-1	lnc-NSRP1-1:1	ENSG00000264125.1	RP11-354P11.4	SLC6A4	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.71;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00chr17:28523376-28543486"	NA	inner
CUST_20273_PI429285431	0.9820324	A	0.97940314	A	1.00182412585307	0	lncRNA	21916-1_{1..587}	lnc-SLC1A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC1A2-1:1	chr11	 35236378	 35236964	-	lnc-SLC1A2-1	lnc-SLC1A2-1:1	ENSG00000255443.1	RP1-68D18.4	CD44	"hg19_refFlat_CD44:range=chr11:35160851-352508805'pad=0,hg19_refFlat_CD44:range=chr11:35160851-352508805'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_CD44:range=chr11:35160851-352439255'pad=0,hg19_refFlat_CD44:range=chr11:35160851-352439255'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10chr11:35226378-35246532"	NA	inner
CUST_17190_PI429285431	0.9104176	A	0.90951556	A	1.00062544199008	0	lncRNA	18901-1_{1..724}	lnc-IRX1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRX1-4:2	chr5	  3339819	  3340542	+	lnc-IRX1-4	lnc-IRX1-4:2	XLOC_004260	linc-IRX1-4	NA	NA	NA	inter
CUST_35797_PI429285431	0.91937053	A	0.9107717	A	1.00597805243104	0	lncRNA	37207-1_{1..1047}	n344477|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_25|NULL|-1.2911900|-0.2536080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344477|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_25|NULL|-1.2911900|-0.2536080	chr6	 30789404	 30790450	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2982_PI429285431	1.1558834	A	1.0323074	A	1.08943188722367	0	lncRNA	2961-1_{1..923}	"transcript_id ""ENST00000518926.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518926.1"" | genecode_v17"	chr8	  5517201	  5518123	-	ENSG00000254007.1	ENST00000518926.1	RP11-281H11.1	RP11-281H11.1-001	NA	NA	NA	inter
CUST_14031_PI429285431	0.91794413	A	0.92355305	A	0.996119740653424	0	lncRNA	15677-2_{3001..5534}	lnc-BMP6-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BMP6-8:2	chr6	  8929047	  8931580	+	lnc-BMP6-8	lnc-BMP6-8:2	XLOC_005160	linc-SLC35B3-BP	NA	NA	NA	inter
LNCA_21_P0009653	2.3516445	A	3.0772302	P	0.604751479995834	0	lncRNA	TCONS_00026793	NA	NA	NA	NA	XLOC_013100	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013100), lincRNA [TCONS_00026793]"	chr19:46715594-46715653	hs|19q13.32	Agilent_HUMAN_G3V2	TCONS_00026793	TCONS_00026793	chr19	 46715594	 46715653	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45501_PI429285431	4.5048194	P	5.0622544	P	0.679509205109896	0	lncRNA	49913-1_{1..3000}	"gi|338827691|ref|NR_040079.1| Homo sapiens uncharacterized LOC399715 (LOC399715), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338827691|ref|NR_040079.1| Homo sapiens uncharacterized LOC399715 (LOC399715), non-coding RNA"	NA	NA	NA	NA	NA	NR_040079.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_DPPA5:range=chr6:74063043-740639485'pad=0,hg19_refFlat_DPPA5:range=chr6:74063043-740639485'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10"	NA	Unknown
CUST_19492_PI429285431	3.197587	A	4.2747984	P	0.473944029834507	0	lncRNA	21148-1_{1..686}	lnc-CLIC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLIC3-1:1	chr9	139871001	139871686	-	lnc-CLIC3-1	lnc-CLIC3-1:1	ENSG00000238268.1	RP11-229P13.19	LCNL1	NA	chr9:139877445-139880210	inter
CUST_10802_PI429285431	2.7239149	A	2.8371212	A	0.924531064173348	0	lncRNA	12339-1_{1..1436}	lnc-P2RX6-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-P2RX6-1:4	chr22	 21416013	 21417448	+	lnc-P2RX6-1	lnc-P2RX6-1:4	XLOC_014162	linc-RIMBP3C-5	NA	NA	NA	inter
CUST_23763_PI429285431	1.4570321	A	1.2129923	A	1.18430428311053	0	lncRNA	25326-1_{1..368}	lnc-SMUG1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMUG1-6:1	chr12	 54379260	 54379627	-	lnc-SMUG1-6	lnc-SMUG1-6:1	ENSG00000251151.2	HOXC-AS3	HOXC10	"hg19_refFlat_HOXC10:range=chr12:54379044-543832305'pad=0,hg19_refFlat_HOXC10:range=chr12:54379044-543832305'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.40chr12:54378946-54384063"	NA	inner
CUST_28319_PI429285431	1.9682806	A	2.6308687	A	0.631743972708118	0	lncRNA	29964-1_{1..657}	n325624|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045824|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045824|-0.5270320|-0.4788902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325624|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045824|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045824|-0.5270320|-0.4788902	chr13	112024881	112025537	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37419_PI429285431	3.778798	P	4.1530027	P	0.771530609423498	0	lncRNA	38524-2_{3001..5475}	n345873|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1422|NULL|-1.1956600|-0.2180165	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345873|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1422|NULL|-1.1956600|-0.2180165	chr1	  3656489	  3658963	-	NA	NA	NA	NA	CCDC27	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70chr1:3668965-3673820"	NA	inter
CUST_17205_PI429285431	7.918606	P	7.847101	P	1.05081230527283	0	lncRNA	18918-1_{1..500}	lnc-CTDSP2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTDSP2-4:1	chr12	 58491565	 58492064	-	lnc-CTDSP2-4	lnc-CTDSP2-4:1	XLOC_010104	linc-CTDSP2-3	NA	NA	NA	inter
CUST_35383_PI429285431	0.9171796	A	0.8990416	A	1.01265166721531	0	lncRNA	36791-1_{1..1157}	n342432|BC016831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4925|NULL|-1.1685800|-0.2344521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342432|BC016831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4925|NULL|-1.1685800|-0.2344521	chr2	 96331831	 96332987	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51077_PI429285431	0.89792985	A	0.9102849	A	0.99147269738996	0	lncRNA	54715-1_{1..359}	hg19_lincRNAsTranscripts_TCONS_l2_00007175 range=chr13:48399493-48481219 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007175 range=chr13:48399493-48481219 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 48399493	 48399851	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22013_PI429285431	0.90972155	A	0.90259904	A	1.00494915453128	0	lncRNA	23622-1_{1..702}	lnc-CTSL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-CTSL1-1:1	chr9	 90168810	 90169511	+	lnc-CTSL1-1	lnc-CTSL1-1:1	ENSG00000236709.1	DAPK1-IT1	DAPK1	NA	chr9:90158810-90179374	inner
CUST_36338_PI429285431	0.9274933	A	1.6443542	A	0.608419838366463	0	lncRNA	37568-1_{1..2025}	n344865|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_414|NULL|-1.6681600|-0.3652682	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344865|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_414|NULL|-1.6681600|-0.3652682	chr6	 98264507	 98266531	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51204_PI429285431	5.1239243	P	4.916213	P	1.15485466162542	0	lncRNA	54822-1_{1..450}	hg19_lincRNAsTranscripts_TCONS_l2_00008964 range=chr15:28964879-28972488 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008964 range=chr15:28964879-28972488 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 28964879	 28965328	-	NA	NA	NA	NA	LOC653720	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10chr15:28954879-28982488"	NA	inter
CUST_33398_PI429285431	0.93051994	A	0.92263895	A	1.00547763367344	0	lncRNA	34976-1_{1..1765}	n340119|CR623142|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2578|NULL|-1.0919000|-0.2698797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340119|CR623142|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2578|NULL|-1.0919000|-0.2698797	chr10	100164851	100166615	+	NA	NA	NA	NA	HPS1	"hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr10:100175955-100176616"	NA	inner
CUST_11876_PI429285431	0.94586945	A	0.92081463	A	1.01751835536477	0	lncRNA	13457-1_{1..342}	lnc-MCM10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MCM10-1:1	chr10	 13442069	 13442410	+	lnc-MCM10-1	lnc-MCM10-1:1	XLOC_008394	linc-PRPF18-3	NA	NA	NA	inter
CUST_18203_PI429285431	0.9161338	A	0.90498495	A	1.0077577304082	0	lncRNA	19938-1_{1..2029}	lnc-GAS2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GAS2-1:3	chr11	 22965527	 22967555	+	lnc-GAS2-1	lnc-GAS2-1:3	ENSG00000246225	RP11-17A1.3	NA	NA	NA	inter
CUST_30459_PI429285431	12.503611	P	12.720058	P	0.860682475927078	0	lncRNA	32239-1_{1..394}	n335601|CR597056|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000276251|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000276251|-1.0581700|-0.3610636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335601|CR597056|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000276251|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000276251|-1.0581700|-0.3610636	chr1	 33789227	 33789620	-	NA	NA	NA	NA	PHC2	NA	chr1:33779227-33799621	inner
CUST_27310_PI429285431	2.5762296	A	2.6593788	A	0.943994788464921	0	lncRNA	28869-1_{1..822}	n324463|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041336|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041336|-1.3299100|-0.4714245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324463|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041336|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041336|-1.3299100|-0.4714245	chr6	 82611620	 82612441	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43105_PI429285431	7.2434907	P	7.4269233	P	0.880605280223498	0	lncRNA	47769-1_{1..161}	ENST00000411280 ncrna:snRNA chromosome:GRCh37:7:140752049:140752209:1 gene:ENSG00000223212 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000411280 ncrna:snRNA chromosome:GRCh37:7:140752049:140752209:1 gene:ENSG00000223212 gene_biotype:snRNA transcript_biotype:snRNA	chr7	140752049	140752209	+	ENSG00000223212	ENST00000411280	NA	NA	NA	NA	NA	inter
CUST_39925_PI429285431	1.3389133	A	1.2456137	A	1.06680729838957	0	lncRNA	40803-1_{1..1554}	n406789|NR_024240_2|lncRNA|Homosapiens||RefGeneNoncode|NR_024240_2||-0.9761400|-0.3275268	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406789|NR_024240_2|lncRNA|Homosapiens||RefGeneNoncode|NR_024240_2||-0.9761400|-0.3275268	chr6	  1266663	  1268216	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8524_PI429285431	4.3870153	P	4.5868683	P	0.87063927050662	0	lncRNA	10085-1_{1..468}	lnc-RALA-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-RALA-1:7	chr7	 39828953	 39829420	+	lnc-RALA-1	lnc-RALA-1:7	ENSG00000188185	NCRNA00265	NA	NA	NA	inter
CUST_25912_PI429285431	0.8999485	A	0.9043857	A	0.996929092243305	0	lncRNA	27431-1_{1..1751}	lnc-ESR2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ESR2-1:2	chr14	 64803131	 64804881	-	lnc-ESR2-1	lnc-ESR2-1:2	ENSG00000214770.2	RP11-544I20.2	ESR2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr14:64793131-64805268"	NA	inter
CUST_20770_PI429285431	2.1774557	A	2.049629	A	1.09264647989302	0	lncRNA	22403-1_{1..458}	lnc-PTTG1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTTG1-3:1	chr5	160119638	160120095	+	lnc-PTTG1-3	lnc-PTTG1-3:1	ENSG00000254391.1	CTC-529G1.1	ATP10B	NA	chr5:160109638-160129896	inner
CUST_48748_PI429285431	1.3913448	A	2.1973102	A	0.571979204153145	0	lncRNA	52585-1_{1..2429}	hg19_lincRNAsTranscripts_TCONS_l2_00014913 range=chr2:132889690-132893383 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014913 range=chr2:132889690-132893383 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	132889690	132892118	-	NA	NA	NA	NA	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00"	NA	inter
CUST_44634_PI429285431	0.91979694	A	1.2063694	A	0.819847531936401	0	lncRNA	49200-1_{1..3000}	"gi|302371203|ref|NR_036494.1| Homo sapiens centrosomal protein 192kDa pseudogene (LOC643201), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|302371203|ref|NR_036494.1| Homo sapiens centrosomal protein 192kDa pseudogene (LOC643201), non-coding RNA"	Chr5	175570088	175573087	-	643201	NR_036494.1	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10"	NA	inter
CUST_8790_PI429285431	1.5972533	A	3.1249835	A	0.346822595896878	0	lncRNA	10330-1_{1..548}	lnc-DUSP1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DUSP1-4:1	chr5	172386293	172386840	-	lnc-DUSP1-4	lnc-DUSP1-4:1	ENSG00000204758	CTC-308K20.1	ERGIC1	NA	chr5:172376293-172379688	inter
CUST_24631_PI429285431	1.3137656	A	1.0498978	A	1.20069339803646	0	lncRNA	26180-1_{1..790}	lnc-LIN28B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIN28B-1:2	chr6	105616614	105617403	+	lnc-LIN28B-1	lnc-LIN28B-1:2	ENSG00000203808.6	BVES-AS1	POPDC3	NA	chr6:105606614-105626858	inner
CUST_33756_PI429285431	0.9176555	A	1.066602	A	0.901908823584478	0	lncRNA	35311-1_{1..2534}	n340536|BC041991|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2998|NULL|-1.1322700|-0.4117552	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340536|BC041991|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2998|NULL|-1.1322700|-0.4117552	chr5	 80813190	 80815723	-	NA	NA	NA	NA	SSBP2	NA	chr5:80803190-80825724	inner
CUST_48397_PI429285431	7.0463724	P	7.255964	P	0.864782000281712	0	lncRNA	52250-3_{6001..7810}	hg19_lincRNAsTranscripts_TCONS_l2_00000536 range=chr1:120102717-120147798 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000536 range=chr1:120102717-120147798 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	120108717	120110526	+	NA	NA	NA	NA	ZNF697	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr1:120143876-120157798"	NA	inter
LNCA_21_P0009349	0.92899615	A	0.92475307	A	1.0029454081547	0	lncRNA	TCONS_00025738	NA	NA	NA	NA	XLOC_012554	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012554), lincRNA [TCONS_00025738]"	chr17:65761746-65760074	hs|17q24.2	Agilent_HUMAN_G3V2	TCONS_00025738	TCONS_00025738	chr17	 65760074	 65761746	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12357_PI429285431	1.0649427	A	0.9025926	A	1.11910864310766	0	lncRNA	13969-1_{1..481}	lnc-KLHL32-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL32-1:1	chr6	 97243475	 97243955	+	lnc-KLHL32-1	lnc-KLHL32-1:1	XLOC_005395	linc-KLHL32	GPR63	NA	chr6:97245888-97253697	inner
CUST_12647_PI429285431	1.5650567	A	1.2244965	A	1.26624818402175	0	lncRNA	14263-2_{3001..4320}	lnc-GGTLC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GGTLC1-2:1	chr20	 24095361	 24096680	-	lnc-GGTLC1-2	lnc-GGTLC1-2:1	XLOC_013697	linc-GGTLC1-2	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20"	NA	inter
CUST_23421_PI429285431	2.2910218	A	2.6272936	A	0.792085570002232	0	lncRNA	24989-1_{1..300}	lnc-C14orf102-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C14orf102-1:1	chr14	 90871536	 90871835	-	lnc-C14orf102-1	lnc-C14orf102-1:1	ENSG00000258424.1	RP11-471B22.2	CALM1	NA	chr14:90863327-90874619	inner
CUST_38420_PI429285431	0.9273678	A	0.9284105	A	0.999277516551773	0	lncRNA	39450-1_{1..3000}	n382508|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zqg.2||4.2931100|-0.3206019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n382508|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zqg.2||4.2931100|-0.3206019	chr15	 42867856	 42870855	+	NA	NA	NA	NA	STARD9	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_XPNPEP3:range=chr22:41253186-412567855'pad=0,hg19_refFlat_XPNPEP3:range=chr22:41253186-412567855'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-14.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.44chr15:42867857-42975295"	NA	inner
CUST_34105_PI429285431	0.92097104	A	0.9268414	A	0.995939243776155	0	lncRNA	35629-1_{1..3000}	n340932|BX647227|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3397|NULL|-0.2023320|-0.1347336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340932|BX647227|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3397|NULL|-0.2023320|-0.1347336	chr11	  1052610	  1055609	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40"	NA	inter
CUST_11839_PI429285431	0.9198072	A	1.3457453	A	0.744354564033987	0	lncRNA	13416-5_{12001..14080}	lnc-FAM174B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-FAM174B-2:1	chr15	 93126431	 93128510	-	lnc-FAM174B-2	lnc-FAM174B-2:1	XLOC_011584	linc-VPS33B-3	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90"	NA	inter
LNCA_19_P00322942	3.8271384	P	2.6972277	A	2.18845193743639	0	lncRNA	BX640700	NA	BX640700	NA	NA	XLOC_004598	NA	NA	THC2514370	NA	"BROAD Institute lincRNA (XLOC_004598), lincRNA [TCONS_00009262]"	chr5:148793335-148793394	hs|5q32	Agilent_HUMAN_G3V2	BX640700	BX640700	chr5	148793335	148793394	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31951_PI429285431	14.629142	P	14.333164	P	1.2277169620242	0	lncRNA	33676-1_{1..2095}	n338506|AF119897|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|903|NULL|1.6931500|-0.2867342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338506|AF119897|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|903|NULL|1.6931500|-0.2867342	chr1	208890124	208892218	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33846_PI429285431	1.2882113	A	0.9117842	A	1.2981230104992	0	lncRNA	35391-1_{1..2396}	n340632|AL080165|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3094|NULL|-1.1357800|-0.4304814	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340632|AL080165|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3094|NULL|-1.1357800|-0.4304814	chr5	134061116	134063511	-	NA	NA	NA	NA	SEC24A	NA	chr5:134051116-134063601	inner
CUST_11394_PI429285431	0.9127841	A	0.98253876	A	0.95280001432166	0	lncRNA	12959-1_{1..1138}	lnc-PPAPDC3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPAPDC3-2:1	chr9	134222176	134223313	+	lnc-PPAPDC3-2	lnc-PPAPDC3-2:1	XLOC_007591	linc-BAT2L1	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
CUST_4826_PI429285431	1.5771883	A	1.118949	A	1.37386409753432	0	lncRNA	4769-1_{1..514}	"transcript_id ""ENST00000454942.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454942.1"" | genecode_v17"	chr14	 53635772	 53636285	+	ENSG00000237356.1	ENST00000454942.1	AL163953.3	AL163953.3-004	NA	NA	NA	inter
CUST_16728_PI429285431	2.051306	A	2.035109	A	1.0112901630898	0	lncRNA	18435-1_{1..901}	lnc-NOX3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOX3-2:1	chr6	156133055	156133955	-	lnc-NOX3-2	lnc-NOX3-2:1	XLOC_005888	linc-NOX3-2	NA	NA	NA	inter
CUST_163_PI429201921	0.92329776	A	0.9097792	A	1.00941439094195	0	lncRNA	140-1_{1..3000}	TC0Y000292.hg.1	TCONS_00017622-XLOC_008312 // Rinn lincRNAs // linc-SRY-2 chrY:-:6225259-6229454 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:6225259-6229454	NA	Affy_HUMAN_HTA2.0	TCONS_00017622-XLOC_008312	linc-SRY-2	chrY	  6225259	  6229454	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36880_PI429285431	0.92316747	A	0.91865885	A	1.00313002557351	0	lncRNA	38038-1_{1..1159}	n345350|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_899|NULL|-1.2594700|-0.2832958	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345350|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_899|NULL|-1.2594700|-0.2832958	chr18	 36737731	 36738889	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48324_PI429285431	0.907105	A	0.9011334	A	1.00414777601394	0	lncRNA	52182-1_{1..1060}	hg19_lincRNAsTranscripts_TCONS_l2_00000198 range=chr1:31302600-31307282 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000198 range=chr1:31302600-31307282 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 31302600	 31303659	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51799_PI429285431	4.547835	P	4.9688306	P	0.746909006511334	0	lncRNA	55347-1_{1..361}	hg19_lincRNAsTranscripts_TCONS_l2_00012912 range=chr19:19869252-19873507 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012912 range=chr19:19869252-19873507 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 19869252	 19869612	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40178_PI429285431	8.102179	P	8.713464	P	0.65461338189316	0	lncRNA	41012-1_{1..1009}	n407946|NR_027649|lncRNA|Homosapiens||RefGeneNoncode|NR_027649||1.1151800|-0.2058077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407946|NR_027649|lncRNA|Homosapiens||RefGeneNoncode|NR_027649||1.1151800|-0.2058077	chr15	 83676701	 83677709	-	NA	NA	NA	NA	C15orf40	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50chr15:83666701-83680393"	NA	inner
CUST_50684_PI429285431	1.514065	A	1.0772022	A	1.35365754037893	0	lncRNA	54356-1_{1..583}	hg19_lincRNAsTranscripts_TCONS_l2_00003544 range=chr10:47639736-47644864 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003544 range=chr10:47639736-47644864 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 47639736	 47640318	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29254_PI429285431	4.1808124	P	4.7077312	P	0.694035421186588	0	lncRNA	31005-1_{1..232}	n332349|FJ423751|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558582|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558582|0.3746710|-0.0321000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332349|FJ423751|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558582|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558582|0.3746710|-0.0321000	chrX	 21871517	 21871748	+	NA	NA	NA	NA	MBTPS2	NA	chrX:21861517-21884729	inner
CUST_51356_PI429285431	4.037161	P	4.4892697	P	0.730973646843696	0	lncRNA	54952-1_{1..445}	hg19_lincRNAsTranscripts_TCONS_l2_00008793 range=chr15:84866001-84868640 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008793 range=chr15:84866001-84868640 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 84866001	 84866445	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24310_PI429285431	1.0853348	A	0.90356004	A	1.13427838249892	0	lncRNA	25861-1_{1..491}	lnc-ZBED2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZBED2-1:1	chr3	111396190	111396680	-	lnc-ZBED2-1	lnc-ZBED2-1:1	ENSG00000240766.1	PLCXD2-AS1	PLCXD2	NA	chr3:111393523-111406280	inner
CUST_40480_PI429285431	9.074572	P	8.835732	P	1.18004346507078	0	lncRNA	41246-2_{3001..5224}	n409415|NR_033815|lncRNA|Homosapiens||RefGeneNoncode|NR_033815||9.5968700|-0.1350098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409415|NR_033815|lncRNA|Homosapiens||RefGeneNoncode|NR_033815||9.5968700|-0.1350098	chr3	 46713484	 46715707	-	NA	NA	NA	NA	ALS2CL	NA	chr3:46710485-46735194	inner
CUST_12419_PI429285431	1.1370659	A	0.8995408	A	1.17896844074051	0	lncRNA	14032-1_{1..312}	lnc-EFR3A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFR3A-2:2	chr8	132101582	132101893	+	lnc-EFR3A-2	lnc-EFR3A-2:2	XLOC_006928	linc-EFR3A-1	NA	NA	NA	inter
CUST_18267_PI429285431	3.726786	P	3.5479941	P	1.13193561549467	0	lncRNA	20001-1_{1..1519}	lnc-GTF2F2-2:21	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2F2-2:21	chr13	 45965167	 45966685	+	lnc-GTF2F2-2	lnc-GTF2F2-2:21	ENSG00000170919	XXyac-R12DG2.2	SLC25A30	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_RCN1:range=chr11:32112743-321260185'pad=0,hg19_refFlat_RCN1:range=chr11:32112743-321260185'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.80;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90chr13:45967451-45975857"	NA	inter
CUST_14787_PI429285431	0.91518813	A	0.9165877	A	0.999030362403143	0	lncRNA	16448-1_{1..319}	lnc-SLITRK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK1-1:1	chr13	 84655952	 84656270	-	lnc-SLITRK1-1	lnc-SLITRK1-1:1	XLOC_010674	linc-SLITRK1-5	NA	NA	NA	inter
CUST_14295_PI429285431	0.90206635	A	0.9034025	A	0.999074280137944	0	lncRNA	15954-1_{1..542}	lnc-C15orf54-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf54-2:1	chr15	 39684805	 39685346	+	lnc-C15orf54-2	lnc-C15orf54-2:1	XLOC_011215	linc-THBS1-3	NA	NA	NA	inter
CUST_32488_PI429285431	3.6812952	P	4.0072293	P	0.797781680366823	0	lncRNA	34157-1_{1..2113}	n339093|AK096380|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1523|NULL|12.3502000|-0.1579286	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339093|AK096380|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1523|NULL|12.3502000|-0.1579286	chr2	202938036	202940148	+	NA	NA	NA	NA	LOC100652824	NA	chr2:202937978-202978327	inter
CUST_51632_PI429285431	7.1404443	P	7.5396	P	0.758301930039609	0	lncRNA	55202-1_{1..376}	hg19_lincRNAsTranscripts_TCONS_l2_00010788 range=chr17:42010026-42011880 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010788 range=chr17:42010026-42011880 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 42010026	 42010401	+	NA	NA	NA	NA	PPY	NA	chr17:42018172-42019833	inter
CUST_25499_PI429285431	5.093357	P	5.38192	P	0.818717137810182	0	lncRNA	27029-1_{1..1388}	lnc-ARCN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARCN1-1:1	chr11	118508671	118510058	+	lnc-ARCN1-1	lnc-ARCN1-1:1	ENSG00000255176.1	AP002954.3	PHLDB1	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10chr11:118498671-118518815"	NA	inner
CUST_48819_PI429285431	3.0788448	P	2.0776782	A	2.00161790505317	0	lncRNA	52656-1_{1..945}	hg19_lincRNAsTranscripts_TCONS_l2_00014345 range=chr2:242913235-242914707 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014345 range=chr2:242913235-242914707 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	242913235	242914179	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6833_PI429285431	0.90654016	A	1.5788444	A	0.627503651773043	0	lncRNA	6781-1_{1..572}	"transcript_id ""ENST00000442550.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000442550.1"" | genecode_v17"	chr21	 29097118	 29097689	+	ENSG00000225298.1	ENST00000442550.1	LINC00113	LINC00113-003	NA	NA	NA	inter
CUST_45930_PI429285431	5.9311523	P	6.3065867	P	0.770873265398503	0	lncRNA	50236-1_{1..753}	"gi|299782550|ref|NR_033839.1| Homo sapiens uncharacterized LOC399972 (FLJ39051), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299782550|ref|NR_033839.1| Homo sapiens uncharacterized LOC399972 (FLJ39051), non-coding RNA"	Chr11	126211611	126212363	-	399972	NR_033839.1	NA	NA	NA	NA	NA	inter
CUST_9826_PI429285431	2.0679688	A	3.51013	P	0.368015592902597	0	lncRNA	11347-1_{1..421}	lnc-TMEM169-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM169-1:1	chr2	216777131	216777551	+	lnc-TMEM169-1	lnc-TMEM169-1:1	XLOC_001853	linc-TMEM169-1	NA	NA	NA	inter
LNCA_21_P0014840	2.9599867	A	0.92793363	A	4.08986456665301	0	lncRNA	XR_132706	XR_132706	XR_132706	NA	Hs.684535	LOC100507630	uncharacterized LOC100507630	NA	NP283772	NA	"PREDICTED: Homo sapiens hypothetical LOC100507630 (LOC100507630), miscRNA [XR_132706]"	chr2:24448460-24448401	hs|2p23.3	Agilent_HUMAN_G3V2	XR_132706	XR_132706	chr2	 24448401	 24448460	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11133_PI429285431	3.8336234	P	3.9723961	P	0.908291509914591	0	lncRNA	12691-2_{3001..3743}	lnc-PARK7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PARK7-1:2	chr1	  8184534	  8185276	+	lnc-PARK7-1	lnc-PARK7-1:2	XLOC_000042	linc-SLC45A1-2	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60"	NA	inter
CUST_18180_PI429285431	3.3972907	P	3.4789457	P	0.944972990830468	0	lncRNA	19916-1_{1..568}	lnc-SEC22A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SEC22A-2:2	chr3	123348341	123348908	+	lnc-SEC22A-2	lnc-SEC22A-2:2	ENSG00000239523	MYLK-AS1	MYLK	"hg19_refFlat_MYLK:range=chr3:123332952-1235126885'pad=0,hg19_refFlat_MYLK:range=chr3:123332952-1235126885'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40chr3:123338341-123358669"	NA	inner
CUST_17935_PI429285431	0.90508586	A	1.6000028	A	0.617744882845254	0	lncRNA	19667-1_{1..649}	lnc-NEDD1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NEDD1-5:2	chr12	 98110462	 98111110	+	lnc-NEDD1-5	lnc-NEDD1-5:2	XLOC_009850	linc-TMPO-1	NA	NA	NA	inter
CUST_44933_PI429285431	3.167272	P	3.314289	P	0.903115868221421	0	lncRNA	49445-3_{6001..6486}	"gi|195539386|ref|NR_003655.2| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide J4, pseudogene (POLR2J4), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|195539386|ref|NR_003655.2| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide J4, pseudogene (POLR2J4), non-coding RNA"	NA	NA	NA	NA	NA	NR_003655.2	NA	NA	NA	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_UBE2D4:range=chr7:43966132-439922945'pad=0,hg19_refFlat_UBE2D4:range=chr7:43966132-439922945'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-62.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20"	NA	Unknown
CUST_29518_PI429285431	0.90780306	A	0.9075684	A	1.00016266714626	0	lncRNA	31276-1_{1..2382}	n332962|AF094508|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000068406|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000068406|6.8551300|-0.0396781	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332962|AF094508|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000068406|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000068406|6.8551300|-0.0396781	chr4	 88535201	 88537582	-	NA	NA	NA	NA	DSPP	"hg19_refFlat_DSPP:range=chr4:88532061-885377205'pad=0,hg19_refFlat_DSPP:range=chr4:88532061-885377205'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80chr4:88529681-88538025"	NA	inner
LNCA_21_P0006818	8.086463	P	8.431137	P	0.787485901490103	0	lncRNA	TCONS_00018092	NA	NA	NA	NA	XLOC_008358	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008358), lincRNA [TCONS_00018092]"	chr10:4094320-4132012	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_00018092	TCONS_00018092	chr10	  4094320	  4132012	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13851_PI429285431	2.0658123	A	1.4080931	A	1.5775865971048	0	lncRNA	15494-1_{1..1024}	lnc-TP53I13-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TP53I13-1:3	chr17	 27895296	 27896319	+	lnc-TP53I13-1	lnc-TP53I13-1:3	XLOC_012161	linc-TP53I13	GIT1	NA	chr17:27900487-27905678	inter
CUST_37462_PI429285431	8.422251	P	8.806587	P	0.766131529242753	0	lncRNA	38561-1_{1..920}	n345914|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1463|NULL|-1.2651900|-0.2992624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345914|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1463|NULL|-1.2651900|-0.2992624	chr3	104528126	104529045	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40"	NA	inter
CUST_37320_PI429285431	6.675603	P	6.5611115	P	1.08259340161894	0	lncRNA	38427-1_{1..1549}	n345764|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1313|NULL|-1.3489700|-0.1186405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345764|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1313|NULL|-1.3489700|-0.1186405	chr17	 62796439	 62797987	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11912_PI429285431	2.289749	A	1.3020542	A	1.98301391344322	0	lncRNA	13493-1_{1..337}	lnc-IRX5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRX5-2:1	chr16	 54888738	 54889074	+	lnc-IRX5-2	lnc-IRX5-2:1	XLOC_011730	linc-IRX5	NA	NA	NA	inter
CUST_11216_PI429285431	0.9019881	A	1.2649868	A	0.777546736522869	0	lncRNA	12774-1_{1..584}	lnc-AC018682.6.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC018682.6.1-1:4	chr2	 46671183	 46671766	+	lnc-AC018682.6.1-1	lnc-AC018682.6.1-1:4	XLOC_001455	linc-LOC388946	NA	NA	NA	inter
LNCA_21_P0005571	12.9283285	P	13.017134	P	0.940300962638155	0	lncRNA	TCONS_00014180	NA	NA	NA	NA	XLOC_006188	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006188), lincRNA [TCONS_00014180]"	chr7:99597123-99597182	hs|7q22.1	Agilent_HUMAN_G3V2	TCONS_00014180	TCONS_00014180	chr7	 99597123	 99597182	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16148_PI429285431	1.1135674	A	0.90702116	A	1.15392242590991	0	lncRNA	17853-1_{1..567}	lnc-TIMP3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TIMP3-4:1	chr22	 33562167	 33562733	+	lnc-TIMP3-4	lnc-TIMP3-4:1	XLOC_014216	linc-ISX-3	NA	NA	NA	inter
CUST_15671_PI429285431	2.6642733	A	1.7878811	A	1.83577875751544	0	lncRNA	17358-1_{1..1711}	lnc-PFKP-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PFKP-9:2	chr10	  2608721	  2610431	+	lnc-PFKP-9	lnc-PFKP-9:2	XLOC_008342	linc-PFKP-3	NA	NA	NA	inter
CUST_39977_PI429285431	10.350344	P	10.545633	P	0.873397919726396	0	lncRNA	40848-1_{1..1574}	n407057|NR_024551|lncRNA|Homosapiens||RefGeneNoncode|NR_024551||8.3056400|-0.0614349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407057|NR_024551|lncRNA|Homosapiens||RefGeneNoncode|NR_024551||8.3056400|-0.0614349	chr19	 11616743	 11618316	-	NA	NA	NA	NA	ECSIT	NA	chr19:11616744-11639987	inner
CUST_35102_PI429285431	5.855623	P	6.192218	P	0.791908142773566	0	lncRNA	36509-1_{1..745}	n342071|AF128541|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4552|NULL|-0.7199850|-0.2335515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342071|AF128541|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4552|NULL|-0.7199850|-0.2335515	chr12	133413292	133414036	-	NA	NA	NA	NA	CHFR	NA	chr12:133416938-133424030	inter
CUST_35731_PI429285431	0.92374206	A	0.90339667	A	1.01420225693941	0	lncRNA	37149-1_{1..3000}	n342899|D64053|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5407|NULL|4.8252500|-0.2845979	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342899|D64053|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5407|NULL|4.8252500|-0.2845979	chr12	 71031861	 71034860	-	NA	NA	NA	NA	PTPRR	NA	chr12:71031853-71314584	inner
CUST_30760_PI429285431	0.91817904	A	0.9122769	A	1.00409943147575	0	lncRNA	32545-1_{1..360}	n336585|Z25425|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326706|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326706|0.8403380|-0.3277792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336585|Z25425|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326706|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326706|0.8403380|-0.3277792	chr1	211844573	211844932	-	NA	NA	NA	NA	NEK2	NA	chr1:211834573-211848972	inner
CUST_31211_PI429285431	0.90892994	A	0.8954715	A	1.00937232749331	0	lncRNA	33003-2_{3001..3865}	n337657|AK125468|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|37|NULL|-0.9797720|-0.1779769	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337657|AK125468|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|37|NULL|-0.9797720|-0.1779769	chrX	 39961944	 39962808	-	NA	NA	NA	NA	BCOR	NA	chrX:39948944-39972809	inner
CUST_15311_PI429285431	1.985801	A	2.8566756	A	0.54681525621775	0	lncRNA	16990-1_{1..544}	lnc-RBMY1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RBMY1B-1:1	chrY	 23331842	 23332385	+	lnc-RBMY1B-1	lnc-RBMY1B-1:1	XLOC_008299	linc-RBMY1B	NA	NA	NA	inter
CUST_12217_PI429285431	0.9293226	A	0.9085313	A	1.01451577629914	0	lncRNA	13820-1_{1..1053}	lnc-CCHCR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCHCR1-1:1	chr6	 31153803	 31154855	-	lnc-CCHCR1-1	lnc-CCHCR1-1:1	XLOC_005677	linc-POU5F1-1	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
CUST_6445_PI429285431	0.90522623	A	0.9513863	A	0.968510724996075	0	lncRNA	6386-1_{1..560}	"transcript_id ""ENST00000593063.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593063.1"" | genecode_v17"	chr19	 32032945	 32033504	+	ENSG00000267407.1	ENST00000593063.1	CTD-2050I18.1	CTD-2050I18.1-001	NA	NA	NA	inter
CUST_14811_PI429285431	6.563428	P	6.7848554	P	0.857716393357072	0	lncRNA	16473-1_{1..279}	lnc-RPL21-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPL21-1:1	chr13	 27756971	 27757249	+	lnc-RPL21-1	lnc-RPL21-1:1	XLOC_010323	linc-RPL21-1	NA	NA	NA	inter
CUST_4367_PI429285431	9.6188345	P	9.235503	P	1.30435041223536	0	lncRNA	4321-1_{1..926}	"transcript_id ""ENST00000548722.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000548722.2"" | genecode_v17"	chr12	 90501516	 90502441	+	ENSG00000257194.2	ENST00000548722.2	RP11-567C2.1	RP11-567C2.1-001	NA	NA	NA	inter
CUST_29978_PI429285431	1.5192909	A	1.3529963	A	1.12217260608304	0	lncRNA	31744-1_{1..357}	n334234|S63838|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216036|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216036|0.8661040|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334234|S63838|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216036|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216036|0.8661040|-1.0000000	chr1	 41945125	 41945481	-	NA	NA	NA	NA	EDN2	NA	chr1:41944446-41950344	inner
CUST_22873_PI429285431	2.0980315	A	3.1638417	P	0.477704310518737	0	lncRNA	24450-1_{1..437}	lnc-PLEKHA8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PLEKHA8-1:1	chr7	 30180929	 30181365	+	lnc-PLEKHA8-1	lnc-PLEKHA8-1:1	ENSG00000230751.1	AC007036.4	C7orf41	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.81;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60chr7:30174552-30191033"	NA	inner
CUST_40888_PI429285431	8.519714	P	8.956473	P	0.738792435630182	0	lncRNA	41578-2_{3001..4014}	n410696|NR_037946|lncRNA|Homosapiens||RefGeneNoncode|NR_037946||14.2831000|-0.0655742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410696|NR_037946|lncRNA|Homosapiens||RefGeneNoncode|NR_037946||14.2831000|-0.0655742	chr11	 62460733	 62461746	-	NA	NA	NA	NA	TTC9C	NA	chr11:62495952-62504856	inner
CUST_38601_PI429285431	6.4006066	P	6.3769884	P	1.01650562599099	0	lncRNA	39609-1_{1..3000}	n383703|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tfs.3||3.5612600|-0.1913834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n383703|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tfs.3||3.5612600|-0.1913834	chr2	111132686	111135685	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZBTB45:range=chr19:59025421-590290405'pad=0,hg19_refFlat_ZBTB45:range=chr19:59025421-590290405'pad=0 3'pad=0 strand=- repeatMasking=none,-101.60"	NA	inter
CUST_4209_PI429285431	0.91373986	A	0.91488266	A	0.999208185053091	0	lncRNA	4168-1_{1..380}	"transcript_id ""ENST00000540595.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000540595.1"" | genecode_v17"	chr12	 27301216	 27301595	-	ENSG00000256226.1	ENST00000540595.1	RP11-582E3.2	RP11-582E3.2-002	NA	NA	NA	inter
CUST_5902_PI429285431	0.9017541	A	0.9046026	A	0.998027518160371	0	lncRNA	5834-1_{1..3000}	"transcript_id ""ENST00000565472.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565472.1"" | genecode_v17"	chr17	 53246184	 53249183	+	ENSG00000261589.1	ENST00000565472.1	CTC-462L7.1	CTC-462L7.1-001	STXBP4	NA	chr17:53236184-53241449	inter
CUST_20783_PI429285431	5.9523077	P	6.042039	P	0.939697750351627	0	lncRNA	22416-1_{1..535}	lnc-HPS4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HPS4-1:1	chr22	 26649940	 26650474	-	lnc-HPS4-1	lnc-HPS4-1:1	ENSG00000224192.2	RP11-259P1.1	SEZ6L	NA	chr22:26639940-26660058	inner
CUST_12371_PI429285431	5.881337	P	6.616937	P	0.600568203523956	0	lncRNA	13983-1_{1..453}	lnc-STAU1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STAU1-1:3	chr20	 47659687	 47660139	-	lnc-STAU1-1	lnc-STAU1-1:3	XLOC_013781	linc-PREX1-2	CSE1L	NA	chr20:47654895-47669915	inter
LNCA_21_P0008311	0.9263813	A	1.3489821	A	0.746078427936301	0	lncRNA	TCONS_00022454	NA	NA	NA	NA	XLOC_010782	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010782), lincRNA [TCONS_00022454]"	chr14:29566422-29566481	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022454	TCONS_00022454	chr14	 29566422	 29566481	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46260_PI429285431	13.619281	P	13.284994	P	1.26075417255125	0	lncRNA	50499-1_{1..1144}	"gi|302318968|ref|NR_036487.1| Homo sapiens FGF14 antisense RNA 2 (FGF14-AS2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302318968|ref|NR_036487.1| Homo sapiens FGF14 antisense RNA 2 (FGF14-AS2), non-coding RNA"	Chr13	103046928	103048071	+	283481	NR_036487.1	NA	NA	NA	NA	NA	inter
CUST_1255_PI429285431	0.9114133	A	0.91239333	A	0.999320925644063	0	lncRNA	1247-1_{1..512}	"transcript_id ""ENST00000424395.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424395.1"" | genecode_v17"	chr2	221655798	221656309	+	ENSG00000224819.1	ENST00000424395.1	AC093843.1	AC093843.1-001	NA	NA	NA	inter
CUST_23127_PI429285431	0.9470321	A	0.91301924	A	1.0238560269101	0	lncRNA	24698-1_{1..834}	lnc-GOLPH3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GOLPH3-1:1	chr5	 32121966	 32122799	-	lnc-GOLPH3-1	lnc-GOLPH3-1:1	ENSG00000250764.1	CTD-2152M20.2	GOLPH3	NA	chr5:32124824-32132047	inter
CUST_11808_PI429285431	9.140651	P	9.39986	P	0.835545906489302	0	lncRNA	13389-1_{1..399}	lnc-ZNF296-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF296-1:1	chr19	 45457152	 45457550	-	lnc-ZNF296-1	lnc-ZNF296-1:1	XLOC_013360	linc-CEACAM20-4	CLPTM1	NA	chr19:45457842-45467419	inter
CUST_235_PI429285431	0.9030859	A	0.89659655	A	1.00450820617906	0	lncRNA	226-1_{1..683}	"transcript_id ""ENST00000433377.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433377.1"" | genecode_v17"	chr1	 54982085	 54982767	-	ENSG00000235741.1	ENST00000433377.1	RP5-866L20.1	RP5-866L20.1-001	ACOT11	NA	chr1:54990059-54992932	inter
LNCA_21_P0004438	2.101527	A	1.2439778	A	1.81195760431775	0	lncRNA	TCONS_00010462	NA	NA	NA	NA	XLOC_004983	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004983), lincRNA [TCONS_00010462]"	chr5:124331293-124329391	hs|5q23.2	Agilent_HUMAN_G3V2	TCONS_00010462	TCONS_00010462	chr5	124329391	124331293	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12451_PI429285431	0.92144555	A	0.92614275	A	0.996749443598503	0	lncRNA	14063-1_{1..1464}	lnc-GALNT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GALNT2-1:1	chr1	230451758	230453221	+	lnc-GALNT2-1	lnc-GALNT2-1:1	XLOC_000605	linc-COG2-2	PGBD5	NA	chr1:230457392-230461789	inter
CUST_12902_PI429285431	8.535473	P	8.502038	P	1.02344601165855	0	lncRNA	14531-1_{1..345}	lnc-CMTM4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMTM4-1:1	chr16	 66586328	 66586672	-	lnc-CMTM4-1	lnc-CMTM4-1:1	XLOC_011984	linc-TK2	CKLF-CMTM1	NA	chr16:66586466-66596381	inter
CUST_45333_PI429285431	14.819314	P	14.621134	P	1.1472501536748	0	lncRNA	49772-1_{1..277}	"gi|292658850|ref|NR_003051.3| Homo sapiens RNA component of mitochondrial RNA processing endoribonuclease (RMRP), RNase MRP RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|292658850|ref|NR_003051.3| Homo sapiens RNA component of mitochondrial RNA processing endoribonuclease (RMRP), RNase MRP RNA"	NA	NA	NA	NA	NA	NR_003051.3	NA	NA	NA	NA	NA	Unknown
CUST_35055_PI429285431	0.92745334	A	0.9368514	A	0.993506932864431	0	lncRNA	36465-1_{1..3000}	n342002|BC041342|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4483|NULL|-1.1430000|-0.2864410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342002|BC041342|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4483|NULL|-1.1430000|-0.2864410	chr12	103941571	103944570	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28953_PI429285431	0.8978535	A	0.89530736	A	1.00176640802622	0	lncRNA	30674-1_{1..3000}	n326383|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098435|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098435|-1.1549100|-0.3112374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326383|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098435|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098435|-1.1549100|-0.3112374	chr1	147638915	147641914	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007293	1.8653541	A	0.92585945	A	1.91785633056625	0	lncRNA	TCONS_00020017	NA	NA	NA	NA	XLOC_009322	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009322), lincRNA [TCONS_00020017]"	chr11:126891279-126891338	hs|11q24.2	Agilent_HUMAN_G3V2	TCONS_00020017	TCONS_00020017	chr11	126891279	126891338	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19042_PI429285431	9.511537	P	9.986578	P	0.719446343744486	0	lncRNA	20732-1_{1..1791}	lnc-HIC2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HIC2-1:3	chr22	 21823783	 21825573	+	lnc-HIC2-1	lnc-HIC2-1:3	ENSG00000206140	KB-1323B2.6	TMEM191C	NA	chr22:21821459-21824224	inner
CUST_30036_PI429285431	1.245683	A	0.9023793	A	1.26865843498136	0	lncRNA	31805-1_{1..410}	n334519|U36217|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219446_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219446_10|-1.3762900|-0.5510800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334519|U36217|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219446_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219446_10|-1.3762900|-0.5510800	chrY	 24050342	 24050751	-	NA	NA	NA	NA	RBMY1E	NA	chrY:24049765-24060752	inner
CUST_24007_PI429285431	0.91116357	A	1.3710039	A	0.727066722178998	0	lncRNA	25560-1_{1..431}	lnc-STRN3-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STRN3-1:5	chr14	 31354174	 31354604	-	lnc-STRN3-1	lnc-STRN3-1:5	ENSG00000258525.1	RP11-829H16.3	STRN3	"hg19_refFlat_COCH:range=chr14:31344145-313589975'pad=0,hg19_refFlat_COCH:range=chr14:31344145-313589975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10chr14:31363005-31364394"	NA	inter
CUST_25585_PI429285431	6.8773236	P	5.7481213	P	2.18737761559247	0	lncRNA	27114-2_{3001..3334}	lnc-BLID-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-BLID-1:5	chr11	121975155	121975488	-	lnc-BLID-1	lnc-BLID-1:5	ENSG00000255248.2	RP11-166D19.1	NA	NA	NA	inter
CUST_14796_PI429285431	0.9294528	A	0.92814875	A	1.00090430722025	0	lncRNA	16457-1_{1..427}	lnc-SNX10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNX10-1:1	chr7	 26303338	 26303764	+	lnc-SNX10-1	lnc-SNX10-1:1	XLOC_006019	linc-SNX10	NA	NA	NA	inter
LNCA_21_P0005956	1.28683	A	2.2491262	A	0.513239388763227	0	lncRNA	TCONS_00015375	NA	NA	NA	NA	XLOC_006941	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006941), lincRNA [TCONS_00015375]"	chr8:141475300-141475359	hs|8q24.3	Agilent_HUMAN_G3V2	TCONS_00015375	TCONS_00015375	chr8	141475300	141475359	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39688_PI429285431	2.119909	A	3.0827212	A	0.513055854362401	0	lncRNA	40628-1_{1..985}	n405418|NR_002169|lncRNA|Homosapiens||RefGeneNoncode|NR_002169||7.4845800|-0.0798106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405418|NR_002169|lncRNA|Homosapiens||RefGeneNoncode|NR_002169||7.4845800|-0.0798106	chr16	  3265561	  3266545	+	NA	NA	NA	NA	ZNF200	NA	chr16:3272325-3276546	inter
CUST_40379_PI429285431	1.921252	A	1.9728835	A	0.964844598289555	0	lncRNA	41174-1_{1..1073}	n409202|NR_033368|lncRNA|Homosapiens||RefGeneNoncode|NR_033368||-0.9565230|-0.2946776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409202|NR_033368|lncRNA|Homosapiens||RefGeneNoncode|NR_033368||-0.9565230|-0.2946776	chr21	 30968359	 30969431	+	NA	NA	NA	NA	GRIK1	"hg19_refFlat_GRIK1:range=chr21:30925876-313118185'pad=0,hg19_refFlat_GRIK1:range=chr21:30925876-313118185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chr21:30958359-31013067"	NA	inner
CUST_28811_PI429285431	1.2789403	A	1.4829494	A	0.868134751702858	0	lncRNA	30519-1_{1..605}	n326223|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091110|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091110|-1.0593000|-0.5535996	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326223|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091110|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091110|-1.0593000|-0.5535996	chr1	220153612	220154216	-	NA	NA	NA	NA	EPRS	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70chr1:220143612-220220000"	NA	inner
CUST_21631_PI429285431	1.7665294	A	1.0514767	A	1.64154318022094	0	lncRNA	23243-1_{1..673}	lnc-SAP30-5:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:13	chr4	174462626	174463298	+	lnc-SAP30-5	lnc-SAP30-5:13	ENSG00000237125.3	RP11-471J12.1	NA	NA	NA	inter
CUST_24424_PI429285431	1.2651831	A	1.75477	A	0.712229007616707	0	lncRNA	25977-1_{1..699}	lnc-KCTD3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCTD3-3:1	chr1	216377372	216378070	+	lnc-KCTD3-3	lnc-KCTD3-3:1	ENSG00000236292.1	RP5-1099E6.3	USH2A	NA	chr1:216367372-216387708	inner
CUST_8171_PI429285431	9.596168	P	9.446622	P	1.10922035789405	0	lncRNA	9773-1_{1..3000}	lnc-KIAA0141-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA0141-1:1	chr5	141230405	141233404	+	lnc-KIAA0141-1	lnc-KIAA0141-1:1	ENSG00000246581	XLOC_004581	PCDH1	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30chr5:141232672-141241803"	NA	inter
CUST_43129_PI429285431	4.728377	P	4.584901	P	1.10456322449398	0	lncRNA	47943-1_{1..1881}	ENST00000561575 havana:lincRNA chromosome:GRCh37:HG14_PATCH:57472478:57483910:1 gene:ENSG00000260653 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000561575 havana:lincRNA chromosome:GRCh37:HG14_PATCH:57472478:57483910:1 gene:ENSG00000260653 gene_biotype:lincRNA transcript_biotype:lincRNA	chrHG14_PATCH	 57472478	 57474358	+	ENSG00000260653	ENST00000561575	NA	NA	NA	NA	NA	Unknown
CUST_47994_PI429285431	6.597756	P	6.2613096	P	1.26264265970474	0	lncRNA	51881-2_{3001..4689}	"gi|410173208|ref|XR_172152.1| PREDICTED: Homo sapiens polycystic kidney disease 1 (autosomal dominant) pseudogene 1 (PKD1P1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173208|ref|XR_172152.1| PREDICTED: Homo sapiens polycystic kidney disease 1 (autosomal dominant) pseudogene 1 (PKD1P1), misc_RNA"	NA	NA	NA	NA	NA	XR_172152.1	NA	NA	NA	"hg19_refFlat_PLA2G10:range=chr16:14766464-147880865'pad=0,hg19_refFlat_PLA2G10:range=chr16:14766464-147880865'pad=0 3'pad=0 strand=- repeatMasking=none,-96.70"	NA	Unknown
CUST_29537_PI429285431	0.9185482	A	0.9195016	A	0.999339371789024	0	lncRNA	31296-1_{1..428}	n333004|AF147347|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071420|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071420|-1.0265000|-0.4695899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333004|AF147347|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071420|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071420|-1.0265000|-0.4695899	chr13	 72287225	 72287652	-	NA	NA	NA	NA	DACH1	NA	chr13:72277225-72297653	inner
CUST_21360_PI429285431	0.91417104	A	0.90801585	A	1.00427556686043	0	lncRNA	22983-2_{3001..3294}	lnc-NPHS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NPHS2-1:1	chr1	179520817	179521110	-	lnc-NPHS2-1	lnc-NPHS2-1:1	ENSG00000261250.1	RP11-545A16.1	AXDND1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr1:179507817-179523870"	NA	inner
CUST_37929_PI429285431	0.97008306	A	0.91510457	A	1.03884361444375	0	lncRNA	39018-1_{1..1423}	n346473|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2023|NULL|-1.3050500|-0.3512785	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346473|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2023|NULL|-1.3050500|-0.3512785	chr6	 25107309	 25108731	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46621_PI429285431	7.009876	P	8.375362	P	0.388103675174284	0	lncRNA	50798-1_{1..1479}	"gi|73760397|ref|NR_002556.1| Homo sapiens coiled-coil domain containing 101 pseudogene (LOC388242), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|73760397|ref|NR_002556.1| Homo sapiens coiled-coil domain containing 101 pseudogene (LOC388242), non-coding RNA"	Chr16	 29476288	 29477766	-	388242	NR_002556.1	NA	NA	NA	"hg19_refFlat_SLX1B:range=chr16:30205406-302087875'pad=0,hg19_refFlat_SLX1B:range=chr16:30205406-302087875'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_SLX1A:range=chr16:30205406-302087875'pad=0,hg19_refFlat_SLX1A:range=chr16:30205406-302087875'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_SLX1A:range=chr16:29466064-294694455'pad=0,hg19_refFlat_SLX1A:range=chr16:29466064-294694455'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_SLX1B:range=chr16:29466064-294694455'pad=0,hg19_refFlat_SLX1B:range=chr16:29466064-294694455'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40"	NA	inter
LNCA_21_P0014649	0.91334873	A	0.9157635	A	0.998327608989769	0	lncRNA	XR_110894	XR_110894	XR_110894	NA	Hs.628183	LOC100289388	uncharacterized LOC100289388	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100289388 (LOC100289388), miscRNA [XR_110894]"	chr11:77885738-77885797	hs|11q14.1	Agilent_HUMAN_G3V2	XR_110894	XR_110894	chr11	 77885738	 77885797	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46597_PI429285431	5.267854	P	6.1312523	P	0.549656304308398	0	lncRNA	50779-1_{1..736}	"gi|190341053|ref|NR_023387.1| Homo sapiens ATP-binding cassette, sub-family C, member 6 pseudogene 2 (ABCC6P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|190341053|ref|NR_023387.1| Homo sapiens ATP-binding cassette, sub-family C, member 6 pseudogene 2 (ABCC6P2), non-coding RNA"	Chr16	 14916289	 14917024	-	730013	NR_023387.1	NA	NA	NA	NA	NA	inter
CUST_43752_PI429285431	2.8102436	A	1.0275192	A	3.44075316789281	0	lncRNA	48490-2_{3001..3429}	"gi|257196139|ref|NR_028396.1| Homo sapiens TSNAX-DISC1 readthrough (TSNAX-DISC1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|257196139|ref|NR_028396.1| Homo sapiens TSNAX-DISC1 readthrough (TSNAX-DISC1), transcript variant 4, non-coding RNA"	Chr1	231667399	231667827	+	100303453	NR_028396.1	NA	NA	NA	NA	NA	inter
CUST_43038_PI429285431	0.95506775	A	0.97810537	A	0.984158358592028	0	lncRNA	46614-1_{1..107}	ENST00000516134 ncrna:snRNA chromosome:GRCh37:1:172582568:172582674:-1 gene:ENSG00000251943 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516134 ncrna:snRNA chromosome:GRCh37:1:172582568:172582674:-1 gene:ENSG00000251943 gene_biotype:snRNA transcript_biotype:snRNA	chr1	172582568	172582674	-	ENSG00000251943	ENST00000516134	NA	NA	C1orf9	NA	chr1:172572568-172580973	inter
CUST_42426_PI429285431	7.0385413	P	7.370252	P	0.79459372199753	0	lncRNA	45144-1_{1..79}	ENST00000386148 ncrna:snoRNA chromosome:GRCh37:X:109468213:109468291:-1 gene:ENSG00000208883 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000386148 ncrna:snoRNA chromosome:GRCh37:X:109468213:109468291:-1 gene:ENSG00000208883 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	109468213	109468291	-	ENSG00000208883	ENST00000386148	NA	NA	AMMECR1	NA	chrX:109458213-109478291	inner
CUST_140_PI429201921	3.583192	P	3.9934485	P	0.752489574995694	0	lncRNA	125-2_{3001..3743}	TC0Y000340.hg.1	TCONS_l2_00030950-XLOC_l2_015963 // Broad TUCP // linc-BPY2B-5 chrY:-:27670207-27673951 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:27670207-27673951	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00030950-XLOC_l2_015963	linc-BPY2B-5	chrY	 27670207	 27673951	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10715_PI429285431	0.90707016	A	1.0688212	A	0.893939412526242	0	lncRNA	12251-1_{1..544}	lnc-TTC34-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC34-3:7	chr1	  2977671	  2978214	-	lnc-TTC34-3	lnc-TTC34-3:7	XLOC_000682	linc-MMEL1-3	PRDM16	NA	chr1:2985742-2988038	inter
LNCA_21_P0007463	0.9305037	A	1.6310376	A	0.615344443225141	0	lncRNA	TCONS_00020070	NA	NA	NA	NA	XLOC_009449	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009449), lincRNA [TCONS_00020070]"	chr11:61239789-61238708	hs|11q12.2	Agilent_HUMAN_G3V2	TCONS_00020070	TCONS_00020070	chr11	 61238708	 61239789	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26161_PI429285431	1.1124063	A	1.2966624	A	0.880102768258924	0	lncRNA	27672-1_{1..1192}	lnc-FAM106B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM106B-1:1	chr17	 20319410	 20320601	+	lnc-FAM106B-1	lnc-FAM106B-1:1	ENSG00000266348.1	AC015818.11	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.32;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_SRP68:range=chr17:74035787-740685725'pad=0,hg19_refFlat_SRP68:range=chr17:74035787-740685725'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_SRP68:range=chr17:74035787-740465685'pad=0,hg19_refFlat_SRP68:range=chr17:74035787-740465685'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10"	NA	inter
CUST_18969_PI429285431	3.115841	A	4.14511	P	0.489958343190762	0	lncRNA	20661-1_{1..466}	lnc-KL-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KL-3:1	chr13	 33909142	 33909607	+	lnc-KL-3	lnc-KL-3:1	ENSG00000227911	RP11-141M1.1	NA	NA	NA	inner
CUST_31329_PI429285431	6.422346	P	6.8773236	P	0.729521498945406	0	lncRNA	33112-1_{1..673}	n337796|AL050085|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|178|NULL|-1.3107500|-0.2756440	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337796|AL050085|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|178|NULL|-1.3107500|-0.2756440	chr1	 26789254	 26789926	-	NA	NA	NA	NA	DHDDS	NA	chr1:26779254-26797797	inner
CUST_8604_PI429285431	0.9157468	A	0.9142577	A	1.00103269833267	0	lncRNA	10159-1_{1..1899}	lnc-NKX3-2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NKX3-2-2:1	chr4	 13535915	 13537813	-	lnc-NKX3-2-2	lnc-NKX3-2-2:1	ENSG00000249512	AC006445.1	NKX3-2	NA	chr4:13542454-13545959	inter
CUST_25145_PI429285431	0.9198799	A	0.91046655	A	1.00654617013428	0	lncRNA	26683-1_{1..444}	lnc-SETD6-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SETD6-3:2	chr16	 60476115	 60476558	+	lnc-SETD6-3	lnc-SETD6-3:2	ENSG00000261436.1	RP11-354I13.2	NA	NA	NA	inter
CUST_51767_PI429285431	3.0060978	A	2.843491	A	1.11930778481094	0	lncRNA	55318-1_{1..509}	hg19_lincRNAsTranscripts_TCONS_l2_00012261 range=chr19:7437657-7441585 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012261 range=chr19:7437657-7441585 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	  7437657	  7438165	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5496_PI429285431	2.3962076	A	3.1277647	A	0.602253550999054	0	lncRNA	5428-1_{1..1682}	"transcript_id ""ENST00000566260.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566260.1"" | genecode_v17"	chr16	 32896515	 32898196	+	ENSG00000214614.2	ENST00000566260.1	RP11-989E6.3	RP11-989E6.3-001	NA	NA	NA	inter
CUST_10266_PI429285431	0.9110044	A	1.0619817	A	0.900640150805757	0	lncRNA	11792-1_{1..3000}	lnc-ATOH8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATOH8-2:1	chr2	 86141408	 86144407	+	lnc-ATOH8-2	lnc-ATOH8-2:1	XLOC_001558	linc-PTCD3-2	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
CUST_28522_PI429285431	1.1532199	A	0.91542435	A	1.17918947283246	0	lncRNA	30192-1_{1..907}	n325868|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050705|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050705|-0.3819280|-0.3331781	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325868|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050705|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050705|-0.3819280|-0.3331781	chr10	122512902	122513808	-	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60"	NA	inter
CUST_48302_PI429285431	3.711774	P	4.3264413	P	0.653080483114005	0	lncRNA	52160-1_{1..1403}	hg19_lincRNAsTranscripts_TCONS_l2_00000129 range=chr1:16974263-16976016 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000129 range=chr1:16974263-16976016 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16974263	 16975665	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23375_PI429285431	1.1097136	A	0.89984953	A	1.15657920646126	0	lncRNA	24943-1_{1..751}	lnc-NUB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUB1-1:1	chr7	151110358	151111108	+	lnc-NUB1-1	lnc-NUB1-1:1	ENSG00000243836.1	RP4-555L14.5	WDR86	NA	chr7:151100358-151107124	inter
CUST_13761_PI429285431	1.4057875	A	1.7560551	A	0.784438581881236	0	lncRNA	15404-3_{6001..9000}	lnc-PTPN14-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPN14-2:1	chr1	214458057	214461056	-	lnc-PTPN14-2	lnc-PTPN14-2:1	XLOC_001200	linc-ANGEL2-1	SMYD2	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0,hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40chr1:214454565-214462637"	NA	inter
CUST_15791_PI429285431	1.2661947	A	1.1998949	A	1.04702783753836	0	lncRNA	17481-1_{1..1119}	lnc-SEMA6A-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEMA6A-5:1	chr5	116260134	116261252	-	lnc-SEMA6A-5	lnc-SEMA6A-5:1	XLOC_004964	linc-SEMA6A-3	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90"	NA	inter
CUST_12683_PI429285431	3.0754497	A	3.516882	P	0.736403148462929	0	lncRNA	14301-1_{1..379}	lnc-KIAA1328-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1328-1:1	chr18	 35462220	 35462598	+	lnc-KIAA1328-1	lnc-KIAA1328-1:1	XLOC_012662	linc-PIK3C3-4	NA	NA	NA	inter
CUST_16589_PI429285431	4.791524	P	5.3932686	P	0.658956620494068	0	lncRNA	18290-1_{1..1050}	lnc-ARHGEF9-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGEF9-1:6	chrX	 62780712	 62781761	-	lnc-ARHGEF9-1	lnc-ARHGEF9-1:6	XLOC_008174	linc-SPIN4	NA	NA	NA	inter
CUST_19203_PI429285431	1.22978	A	2.302534	A	0.475410607966538	0	lncRNA	20873-1_{1..1712}	lnc-SERHL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SERHL2-1:1	chr22	 42908124	 42909835	+	lnc-SERHL2-1	lnc-SERHL2-1:1	ENSG00000172250.10	SERHL	RRP7A	NA	chr22:42904341-42915829	inner
LNCA_19_P00321210	1.6105067	A	1.8407989	A	0.852462218625043	0	lncRNA	ENST00000492553	NA	NA	NA	NA	XLOC_l2_010415	NA	ENST00000492553	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010415), lincRNA [TCONS_l2_00020244]"	chr3:162967114-162967055	hs|3q26.1	Agilent_HUMAN_G3V2	ENST00000492553	ENST00000492553	chr3	162967055	162967114	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003990	0.9299279	A	0.9152631	A	1.0102167025037	0	lncRNA	ENST00000511734	NA	NA	NA	NA	XLOC_004345	NA	ENST00000511734	NA	NA	"BROAD Institute lincRNA (XLOC_004345), lincRNA [TCONS_00009386]"	chr5:38685147-38685206	hs|5p13.1	Agilent_HUMAN_G3V2	ENST00000511734	ENST00000511734	chr5	 38685147	 38685206	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21708_PI429285431	0.92429745	A	1.0422753	A	0.921478333740512	0	lncRNA	23318-2_{3001..3676}	lnc-TRIM44-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TRIM44-2:1	chr11	 35838882	 35839557	+	lnc-TRIM44-2	lnc-TRIM44-2:1	ENSG00000261355.1	RP11-698N11.4	TRIM44	NA	chr11:35825882-35830930	inter
CUST_26556_PI429285431	9.400289	P	9.0492115	P	1.27551290899688	0	lncRNA	28061-1_{1..387}	lnc-DEGS2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DEGS2-3:1	chr14	100715578	100715964	-	lnc-DEGS2-3	lnc-DEGS2-3:1	ENSG00000258522.1	RP11-638I2.3	YY1	"hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00chr14:100705578-100725854"	NA	inner
CUST_4971_PI429285431	2.1123202	A	2.5462162	A	0.740260010427128	0	lncRNA	4915-1_{1..301}	"transcript_id ""ENST00000495064.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000495064.1"" | genecode_v17"	chr14	 97409976	 97410276	+	ENSG00000225163.3	ENST00000495064.1	LINC00618	LINC00618-003	NA	NA	NA	inter
CUST_6862_PI429285431	0.89805657	A	0.89237195	A	1.00394805142824	0	lncRNA	6811-1_{1..860}	"transcript_id ""ENST00000432141.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000432141.1"" | genecode_v17"	chr21	 39578250	 39579109	+	ENSG00000233316.3	ENST00000432141.1	DSCR10	DSCR10-001	NA	NA	NA	inter
LNCA_21_P0013172	0.92644143	A	0.91096854	A	1.01078270894491	0	lncRNA	TCONS_l2_00025652	NA	NA	NA	NA	XLOC_l2_013277	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013277), lincRNA [TCONS_l2_00025652]"	chr7:9809178-9809237	hs|7p21.3	Agilent_HUMAN_G3V2	TCONS_l2_00025652	TCONS_l2_00025652	chr7	  9809178	  9809237	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45920_PI429285431	3.4136248	P	2.8058283	A	1.52392985656493	0	lncRNA	50230-1_{1..3000}	"gi|384871606|ref|NR_047588.1| Homo sapiens transmembrane protein 218 (TMEM218), transcript variant 14, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384871606|ref|NR_047588.1| Homo sapiens transmembrane protein 218 (TMEM218), transcript variant 14, non-coding RNA"	Chr11	124964266	124967265	-	219854	NR_047588.1	NA	NA	NA	NA	NA	inter
CUST_49680_PI429285431	0.9267441	A	1.0935544	A	0.890810025534342	0	lncRNA	53458-1_{1..1228}	hg19_lincRNAsTranscripts_TCONS_l2_00025599 range=chr7:1615450-1620075 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025599 range=chr7:1615450-1620075 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  1615450	  1616677	+	NA	NA	NA	NA	PSMG3	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr7:1606968-1609668"	NA	inter
CUST_11128_PI429285431	0.9096245	A	0.906145	A	1.0024147163575	0	lncRNA	12686-1_{1..409}	lnc-PLD5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLD5-2:1	chr1	242717724	242718132	-	lnc-PLD5-2	lnc-PLD5-2:1	XLOC_001281	linc-PLD5-4	NA	NA	NA	inter
LNCA_21_P0009032	0.92505926	A	0.9092629	A	1.01100936428809	0	lncRNA	THC2784828	NA	NA	NA	NA	XLOC_011943	NA	NA	THC2784828	NA	"BROAD Institute lincRNA (XLOC_011943), lincRNA [TCONS_00024656]"	chr16:052607162-052607103	hs|16q12.2	Agilent_HUMAN_G3V2	THC2784828	THC2784828	chr16	 52607103	 52607162	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8187_PI429285431	2.0265088	A	1.0057533	A	2.02898120347647	0	lncRNA	9786-1_{1..1746}	lnc-RNF144B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RNF144B-1:1	chr6	 18722234	 18723979	+	lnc-RNF144B-1	lnc-RNF144B-1:1	ENSG00000250139	ENST00000510325	NA	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-64.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60"	NA	inter
CUST_6358_PI429285431	2.7814767	A	2.5886824	A	1.14297535794042	0	lncRNA	6283-1_{1..512}	"transcript_id ""ENST00000549131.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549131.1"" | genecode_v17"	chr19	 16127715	 16128226	+	ENSG00000205396.6	ENST00000549131.1	LINC00661	LINC00661-002	NA	NA	NA	inter
CUST_1492_PI429285431	5.7974844	P	5.91589	P	0.921205161712791	0	lncRNA	1479-1_{1..680}	"transcript_id ""ENST00000471176.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000471176.2"" | genecode_v17"	chr3	149694542	149695221	+	ENSG00000242791.2	ENST00000471176.2	RP11-651P23.5	RP11-651P23.5-002	PFN2	NA	chr3:149684542-149688741	inter
CUST_12617_PI429285431	2.7540781	A	2.710164	A	1.03090693538414	0	lncRNA	14232-1_{1..361}	lnc-RFPL3-AS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RFPL3-AS1-1:1	chr22	 32738999	 32739359	-	lnc-RFPL3-AS1-1	lnc-RFPL3-AS1-1:1	XLOC_014349	linc-SLC5A4	NA	NA	NA	inter
CUST_50397_PI429285431	0.91206396	A	0.89271283	A	1.01350354146934	0	lncRNA	54101-1_{1..486}	hg19_lincRNAsTranscripts_TCONS_l2_00030421 range=chrX:698300-698866 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030421 range=chrX:698300-698866 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	   698300	   698785	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51823_PI429285431	2.7140257	A	3.0578625	A	0.787943014398231	0	lncRNA	55376-1_{1..469}	hg19_lincRNAsTranscripts_TCONS_l2_00012484 range=chr19:36088248-36092394 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012484 range=chr19:36088248-36092394 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 36088248	 36088716	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1148_PI429285431	3.4065685	P	3.5474856	P	0.906942442072931	0	lncRNA	1137-1_{1..660}	"transcript_id ""ENST00000604239.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604239.1"" | genecode_v17"	chr2	158774224	158774883	+	ENSG00000271320.1	ENST00000604239.1	RP11-1152H14.1	RP11-1152H14.1-001	NA	NA	NA	inter
CUST_13958_PI429285431	3.4732378	P	3.4829276	P	0.993306047438035	0	lncRNA	15603-1_{1..292}	lnc-GAPVD1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GAPVD1-2:3	chr9	128183941	128184232	+	lnc-GAPVD1-2	lnc-GAPVD1-2:3	XLOC_007562	linc-PBX3-4	NA	NA	NA	inter
CUST_45589_PI429285431	1.6909859	A	1.8209512	A	0.913853430157088	0	lncRNA	49979-2_{3001..4235}	"gi|219689089|ref|NR_003611.2| Homo sapiens BMS1 pseudogene 5 (BMS1P5), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|219689089|ref|NR_003611.2| Homo sapiens BMS1 pseudogene 5 (BMS1P5), non-coding RNA"	NW_003871068.1	  1060848	  1062082	+	399761	NR_003611.2	NA	NA	NA	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0,hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00"	NA	Unknown
CUST_3014_PI429285431	1.9431711	A	2.0113673	A	0.95382982518484	0	lncRNA	2993-1_{1..661}	"transcript_id ""ENST00000602979.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602979.1"" | genecode_v17"	chr8	 12333971	 12334631	+	ENSG00000270154.1	ENST00000602979.1	RP11-419I17.1	RP11-419I17.1-001	LOC100127885	NA	chr8:12323971-12334631	inter
CUST_45455_PI429285431	10.95186	P	11.238594	P	0.819755737931282	0	lncRNA	49871-1_{1..1659}	"gi|389565495|ref|NR_051967.1| Homo sapiens mitochondrial ribosomal protein S2 (MRPS2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|389565495|ref|NR_051967.1| Homo sapiens mitochondrial ribosomal protein S2 (MRPS2), transcript variant 2, non-coding RNA"	Chr9	138392477	138394135	+	51116	NR_051967.1	NA	NA	NA	NA	NA	inter
CUST_21761_PI429285431	2.456449	A	3.3059547	P	0.554974850417999	0	lncRNA	23371-1_{1..617}	lnc-TGFB3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TGFB3-2:1	chr14	 76673006	 76673622	-	lnc-TGFB3-2	lnc-TGFB3-2:1	ENSG00000258756.1	RP11-361H10.2	C14orf118	"hg19_refFlat_GPATCH2L:range=chr14:76620707-766681945'pad=0,hg19_refFlat_GPATCH2L:range=chr14:76620707-766681945'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.00chr14:76663006-76669134"	NA	inter
LNCA_21_P0003119	1.3345381	A	0.9040448	A	1.34769431454004	0	lncRNA	TCONS_00006513	NA	NA	NA	NA	XLOC_003130	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003130), lincRNA [TCONS_00006513]"	chr3:53119801-53112204	hs|3p21.1	Agilent_HUMAN_G3V2	TCONS_00006513	TCONS_00006513	chr3	 53112204	 53119801	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12317_PI429285431	0.9052126	A	0.9057803	A	0.999606577756431	0	lncRNA	13930-1_{1..384}	lnc-C5orf64-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf64-1:2	chr5	 61052978	 61053361	+	lnc-C5orf64-1	lnc-C5orf64-1:2	XLOC_004405	linc-KIF2A-2	NA	NA	NA	inter
CUST_36767_PI429285431	7.1947646	P	7.480827	P	0.820137437530136	0	lncRNA	37939-2_{3001..4556}	n345246|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_795|NULL|-1.3214200|-0.4346259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345246|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_795|NULL|-1.3214200|-0.4346259	chr14	 71823681	 71825236	+	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70"	NA	inter
CUST_5511_PI429285431	0.90955997	A	0.91958666	A	0.993074123298244	0	lncRNA	5442-1_{1..476}	"transcript_id ""ENST00000562572.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562572.1"" | genecode_v17"	chr16	 34442308	 34442783	+	ENSG00000260958.2	ENST00000562572.1	RP11-488I20.8	RP11-488I20.8-001	NA	NA	NA	inter
CUST_48641_PI429285431	3.9304328	P	4.06532	P	0.910741038919678	0	lncRNA	52488-1_{1..1505}	hg19_lincRNAsTranscripts_TCONS_l2_00014684 range=chr2:91804903-91848026 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014684 range=chr2:91804903-91848026 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 91804903	 91806407	-	NA	NA	NA	NA	LOC100506191	NA	chr2:91832852-91835376	inter
CUST_24226_PI429285431	3.9683297	P	4.977322	P	0.496893198689122	0	lncRNA	25777-1_{1..538}	lnc-SLC39A11-1:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC39A11-1:16	chr17	 70427269	 70427806	-	lnc-SLC39A11-1	lnc-SLC39A11-1:16	ENSG00000227036.2	LINC00511	NA	NA	NA	inter
LNCA_21_P0003415	0.9191144	A	0.90434086	A	1.01029284825946	0	lncRNA	ENST00000505781	NA	NA	NA	NA	XLOC_003732	NA	ENST00000505781	NA	NA	"BROAD Institute lincRNA (XLOC_003732), lincRNA [TCONS_00007656]"	chr4:150632154-150632213	hs|4q31.23	Agilent_HUMAN_G3V2	ENST00000505781	ENST00000505781	chr4	150632154	150632213	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21094_PI429285431	1.2248669	A	0.8982204	A	1.25409487910242	0	lncRNA	22719-1_{1..573}	lnc-CYP7B1-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYP7B1-6:2	chr8	 65280898	 65281470	-	lnc-CYP7B1-6	lnc-CYP7B1-6:2	ENSG00000253554.1	RP11-32K4.1	NA	NA	NA	inter
LNCA_21_P0010732	4.860093	P	5.053507	P	0.87453377011898	0	lncRNA	ENST00000422062	NA	NA	NA	NA	XLOC_l2_000465	NA	ENST00000422062	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000465), lincRNA [TCONS_l2_00002225]"	chr1:157912919-157912978	hs|1q23.1	Agilent_HUMAN_G3V2	ENST00000422062	ENST00000422062	chr1	157912919	157912978	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46667_PI429285431	9.2245245	P	9.664404	P	0.737196179821326	0	lncRNA	50836-1_{1..1753}	"gi|226371728|ref|NR_027398.1| Homo sapiens glucose-fructose oxidoreductase domain containing 2 (GFOD2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226371728|ref|NR_027398.1| Homo sapiens glucose-fructose oxidoreductase domain containing 2 (GFOD2), transcript variant 2, non-coding RNA"	Chr16	 67708436	 67710188	-	81577	NR_027398.1	NA	NA	NA	NA	NA	inter
CUST_15904_PI429285431	0.8981235	A	0.88981175	A	1.00577789408889	0	lncRNA	17597-1_{1..546}	lnc-NUDT6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUDT6-1:1	chr4	124457519	124458064	-	lnc-NUDT6-1	lnc-NUDT6-1:1	XLOC_004060	linc-NUDT6-1	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20"	NA	inter
CUST_14540_PI429285431	0.9086469	A	0.9096056	A	0.999335700542648	0	lncRNA	16208-1_{1..600}	lnc-HAO1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HAO1-2:4	chr20	  7128648	  7129247	-	lnc-HAO1-2	lnc-HAO1-2:4	XLOC_013647	linc-FERMT1-3	NA	NA	NA	inter
CUST_27958_PI429285431	0.92080516	A	0.9112359	A	1.00665495202434	0	lncRNA	29562-1_{1..637}	n325206|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329330|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329330|-0.8775920|-0.4832607	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325206|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329330|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329330|-0.8775920|-0.4832607	chr2	104790461	104791097	-	NA	NA	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60"	NA	inter
CUST_6144_PI429285431	4.8168583	P	5.0621347	P	0.843654148422766	0	lncRNA	6070-1_{1..857}	"transcript_id ""ENST00000573479.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000573479.1"" | genecode_v17"	chr18	 29992145	 29993001	+	ENSG00000262477.1	ENST00000573479.1	AC021224.1	AC021224.1-201	FAM59A	"hg19_refFlat_HNRNPA1L2:range=chr13:53216628-532175905'pad=0,hg19_refFlat_HNRNPA1L2:range=chr13:53216628-532175905'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_HNRNPA1:range=chr12:54674592-546780975'pad=0,hg19_refFlat_HNRNPA1:range=chr12:54674592-546780975'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70chr18:29982145-30003199"	NA	inner
LNCA_21_P0007311	12.292838	P	12.508699	P	0.861032142600904	0	lncRNA	TCONS_00019562	NA	NA	NA	NA	XLOC_009356	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009356), lincRNA [TCONS_00019562]"	chr11:2006246-2006187	hs|11p15.5	Agilent_HUMAN_G3V2	TCONS_00019562	TCONS_00019562	chr11	  2006187	  2006246	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32933_PI429285431	1.0609685	A	0.9187171	A	1.10362603807137	0	lncRNA	34554-1_{1..1171}	n339604|AL080075|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2048|NULL|-1.1607700|-0.4079982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339604|AL080075|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2048|NULL|-1.1607700|-0.4079982	chr3	137749544	137750714	-	NA	NA	NA	NA	CLDN18	"hg19_refFlat_CLDN18:range=chr3:137729068-1377499835'pad=0,hg19_refFlat_CLDN18:range=chr3:137729068-1377499835'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_CLDN18:range=chr3:137717711-1377499835'pad=0,hg19_refFlat_CLDN18:range=chr3:137717711-1377499835'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30chr3:137739544-137752494"	NA	inner
LNCA_21_P0008117	1.3741149	A	2.474107	A	0.466519050355688	0	lncRNA	TCONS_00021900	NA	NA	NA	NA	XLOC_010496	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010496), lincRNA [TCONS_00021900]"	chr13:110678520-110678579	hs|13q34	Agilent_HUMAN_G3V2	TCONS_00021900	TCONS_00021900	chr13	110678520	110678579	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00812062	0.9248265	A	2.268933	A	0.393897864342218	0	lncRNA	TCONS_l2_00017153	NA	NA	NA	NA	XLOC_l2_009140	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009140), lincRNA [TCONS_l2_00017153]"	chr21:16742059-16742000	hs|21q21.1	Agilent_HUMAN_G3V2	TCONS_l2_00017153	TCONS_l2_00017153	chr21	 16742000	 16742059	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25091_PI429285431	1.9738232	A	1.884244	A	1.06405977613226	0	lncRNA	26628-1_{1..446}	lnc-SOX13-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SOX13-3:1	chr1	204246732	204247177	+	lnc-SOX13-3	lnc-SOX13-3:1	ENSG00000231691.1	RP11-203F10.5	PLEKHA6	NA	chr1:204236732-204257076	inner
CUST_43993_PI429285431	0.9167099	A	0.90516496	A	1.00803444693382	0	lncRNA	48690-3_{6001..7290}	"gi|363001194|ref|NR_045628.1| Homo sapiens sodium channel, voltage-gated, type VII, alpha subunit (SCN7A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|363001194|ref|NR_045628.1| Homo sapiens sodium channel, voltage-gated, type VII, alpha subunit (SCN7A), transcript variant 2, non-coding RNA"	Chr2	167266083	167267372	-	6332	NR_045628.1	NA	NA	NA	NA	NA	inter
CUST_49663_PI429285431	5.904284	P	5.770567	P	1.09711670534154	0	lncRNA	53444-1_{1..226}	hg19_lincRNAsTranscripts_TCONS_l2_00026195 range=chr7:128171844-128202497 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026195 range=chr7:128171844-128202497 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	128171844	128172069	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31269_PI429285431	7.3094454	P	7.374165	P	0.956131131719217	0	lncRNA	33058-1_{1..3000}	n337725|AK124653|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|107|NULL|-1.0725200|-0.3373205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337725|AK124653|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|107|NULL|-1.0725200|-0.3373205	chrX	 54219295	 54222294	-	NA	NA	NA	NA	FAM120C	NA	chrX:54209295-54209714	inner
CUST_12821_PI429285431	3.5290134	P	3.8535178	P	0.798572667914527	0	lncRNA	14448-1_{1..687}	lnc-PITRM1-7:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PITRM1-7:8	chr10	  2543498	  2544184	-	lnc-PITRM1-7	lnc-PITRM1-7:8	XLOC_008688	linc-ADARB2-5	NA	NA	NA	inter
CUST_19258_PI429285431	2.2691395	A	2.3714483	A	0.931541017338897	0	lncRNA	20927-1_{1..435}	lnc-TIMP3-6:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMP3-6:7	chr22	 34146591	 34147025	+	lnc-TIMP3-6	lnc-TIMP3-6:7	ENSG00000224973.1	CTA-282F2.3	LARGE	NA	chr22:34136591-34156670	inner
CUST_10407_PI429285431	5.2653103	P	5.448756	P	0.880597284163021	0	lncRNA	11934-1_{1..1031}	lnc-GMNN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GMNN-1:1	chr6	 24797586	 24798616	+	lnc-GMNN-1	lnc-GMNN-1:1	XLOC_005205	linc-LRRC16A-2	FAM65B	NA	chr6:24804513-24808091	inter
CUST_11202_PI429285431	0.92396116	A	1.1533563	A	0.852992439864907	0	lncRNA	12760-1_{1..240}	lnc-RNF144A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF144A-3:1	chr2	  7870367	  7870606	+	lnc-RNF144A-3	lnc-RNF144A-3:1	XLOC_001331	linc-ID2-3	NA	NA	NA	inter
CUST_24781_PI429285431	0.90857744	A	0.8965676	A	1.00835933245479	0	lncRNA	26324-1_{1..482}	lnc-AC016251.1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC016251.1-1:7	chr15	 96870185	 96870666	-	lnc-AC016251.1-1	lnc-AC016251.1-1:7	ENSG00000247809.3	RP11-327J17.3	NR2F2	NA	chr15:96869157-96880326	inner
CUST_1464_PI429285431	1.3732561	A	1.2176627	A	1.11387967780919	0	lncRNA	1453-1_{1..384}	"transcript_id ""ENST00000505557.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505557.1"" | genecode_v17"	chr3	132733848	132734231	-	ENSG00000249725.1	ENST00000505557.1	RP11-469L4.1	RP11-469L4.1-001	TMEM108	NA	chr3:132757171-132765896	inter
CUST_39332_PI429285431	4.444461	P	4.304756	P	1.10167982309598	0	lncRNA	40299-1_{1..1178}	n386391|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010iyn.2||2.3494200|-0.2099971	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386391|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010iyn.2||2.3494200|-0.2099971	chr5	 70422488	 70423665	-	NA	NA	NA	NA	LOC100652870	NA	chr5:70519357-70519728	inter
CUST_42552_PI429285431	1.7087162	A	0.90489393	A	1.74572010843818	0	lncRNA	45364-1_{1..131}	ENST00000383922 ncrna:snoRNA chromosome:GRCh37:8:81229174:81229304:-1 gene:ENSG00000206649 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000383922 ncrna:snoRNA chromosome:GRCh37:8:81229174:81229304:-1 gene:ENSG00000206649 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	 81229174	 81229304	-	ENSG00000206649	ENST00000383922	NA	NA	NA	NA	NA	inter
CUST_34834_PI429285431	1.6966274	A	1.3869851	A	1.23940036646737	0	lncRNA	36264-1_{1..539}	n341740|AF147420|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4213|NULL|-1.1977400|-0.2198951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341740|AF147420|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4213|NULL|-1.1977400|-0.2198951	chr9	103802629	103803167	+	NA	NA	NA	NA	LPPR1	NA	chr9:103792629-103813168	inner
CUST_48236_PI429285431	3.0246673	A	3.0635905	A	0.973381189464666	0	lncRNA	52098-1_{1..477}	hg19_lincRNAsTranscripts_TCONS_l2_00000749 range=chr1:200929145-200934218 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000749 range=chr1:200929145-200934218 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	200929145	200929621	+	NA	NA	NA	NA	KIF21B	NA	chr1:200938520-200944218	inter
CUST_30632_PI429285431	2.6901512	A	1.5672168	A	2.17789499854409	0	lncRNA	32414-1_{1..310}	n335986|X73875|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323403|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323403|0.2920480|-0.1768132	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335986|X73875|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323403|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323403|0.2920480|-0.1768132	chrX	 18915322	 18915631	-	NA	NA	NA	NA	PHKA2	NA	chrX:18910416-18929702	inner
CUST_42839_PI429285431	0.9247291	A	0.9297086	A	0.996554423284481	0	lncRNA	45880-1_{1..88}	ENST00000517136 ncrna:snoRNA chromosome:GRCh37:14:51311343:51311430:1 gene:ENSG00000252945 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517136 ncrna:snoRNA chromosome:GRCh37:14:51311343:51311430:1 gene:ENSG00000252945 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 51311343	 51311430	+	ENSG00000252945	ENST00000517136	NA	NA	NA	NA	NA	inter
LNCA_21_P0010097	0.9816352	A	0.9276399	A	1.03813588850702	0	lncRNA	TCONS_00028579	NA	NA	NA	NA	XLOC_013588	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013588), lincRNA [TCONS_00028579]"	chr20:57721277-57721336	hs|20q13.32	Agilent_HUMAN_G3V2	TCONS_00028579	TCONS_00028579	chr20	 57721277	 57721336	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46821_PI429285431	11.921869	P	11.835327	P	1.06182204546123	0	lncRNA	50961-1_{1..1654}	"gi|294459998|ref|NR_033465.1| Homo sapiens 5'-nucleotidase, cytosolic III-like (NT5C3L), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|294459998|ref|NR_033465.1| Homo sapiens 5'-nucleotidase, cytosolic III-like (NT5C3L), transcript variant 3, non-coding RNA"	NW_003571052.1	   111724	   113377	-	115024	NR_033465.1	NA	NA	NA	NA	NA	Unknown
CUST_43011_PI429285431	3.0462635	A	3.534883	P	0.712706753351058	0	lncRNA	46219-1_{1..62}	ENST00000459284 ncrna:snRNA chromosome:GRCh37:11:102774622:102774683:-1 gene:ENSG00000238562 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459284 ncrna:snRNA chromosome:GRCh37:11:102774622:102774683:-1 gene:ENSG00000238562 gene_biotype:snRNA transcript_biotype:snRNA	chr11	102774622	102774683	-	ENSG00000238562	ENST00000459284	NA	NA	NA	NA	NA	inter
CUST_9409_PI429285431	0.92392606	A	0.92554975	A	0.998875176942638	0	lncRNA	10912-1_{1..693}	lnc-CHMP2B-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHMP2B-2:4	chr3	 86771631	 86772323	+	lnc-CHMP2B-2	lnc-CHMP2B-2:4	XLOC_002725	linc-CHMP2B-2	NA	NA	NA	inter
CUST_14034_PI429285431	0.91061735	A	0.91086584	A	0.999827774689584	0	lncRNA	15680-1_{1..209}	lnc-C6orf146-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C6orf146-1:1	chr6	  4021278	  4021486	-	lnc-C6orf146-1	lnc-C6orf146-1:1	XLOC_005587	linc-C6orf145-3	PRPF4B	NA	chr6:4021569-4031449	inter
LNCA_21_P0014281	2.9823692	A	3.682977	P	0.615312923889165	0	lncRNA	XR_109121	XR_109121	XR_109121	NA	Hs.564504	LOC100507492	uncharacterized LOC100507492	NA	THC2643991	NA	"PREDICTED: Homo sapiens hypothetical LOC100507492 (LOC100507492), miscRNA [XR_109121]"	chr12:4019486-4019545	hs|12p13.32	Agilent_HUMAN_G3V2	XR_109121	XR_109121	chr12	  4019486	  4019545	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28338_PI429285431	1.0519905	A	1.0008814	A	1.03606110998116	0	lncRNA	29983-1_{1..361}	n325643|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045702|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045702|-1.3884300|-0.3503111	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325643|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045702|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045702|-1.3884300|-0.3503111	chr13	102330286	102330646	+	NA	NA	NA	NA	ITGBL1	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30chr13:102320286-102341518"	NA	inner
CUST_26963_PI429285431	0.92204684	A	0.9075284	A	1.01011422220623	0	lncRNA	28485-1_{1..2720}	n324046|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053006|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053006|0.5250280|-0.2648299	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324046|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053006|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053006|0.5250280|-0.2648299	chr9	 91822755	 91825474	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0,hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60"	NA	inter
CUST_37559_PI429285431	1.2563691	A	0.90581715	A	1.27504834531073	0	lncRNA	38662-1_{1..2734}	n346035|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1585|NULL|-1.4660100|-0.2396763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346035|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1585|NULL|-1.4660100|-0.2396763	chr2	202835672	202838405	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16461_PI429285431	0.9118103	A	0.90538657	A	1.00446251784745	0	lncRNA	18159-1_{1..1230}	lnc-STAB2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STAB2-1:4	chr12	103972097	103973326	+	lnc-STAB2-1	lnc-STAB2-1:4	XLOC_009859	linc-STAB2-1	STAB2	NA	chr12:103981069-103982694	inter
CUST_2424_PI429285431	0.91687715	A	0.90850204	A	1.00582206661665	0	lncRNA	2416-1_{1..494}	"transcript_id ""ENST00000520275.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520275.1"" | genecode_v17"	chr5	169623579	169624072	-	ENSG00000249601.2	ENST00000520275.1	CTB-27N1.1	CTB-27N1.1-002	NA	NA	NA	inter
CUST_34839_PI429285431	1.3168774	A	0.9244221	A	1.31262544057844	0	lncRNA	36268-1_{1..3000}	n341744|BC035187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4217|NULL|0.2800410|-0.3604748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341744|BC035187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4217|NULL|0.2800410|-0.3604748	chr9	105902804	105905803	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50"	NA	inter
CUST_38511_PI429285431	6.904677	P	7.228091	P	0.799176463422413	0	lncRNA	39522-1_{1..1931}	n383079|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gvi.1||0.3713340|-0.2059523	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383079|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gvi.1||0.3713340|-0.2059523	chr17	 19192082	 19194012	+	NA	NA	NA	NA	EPN2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60chr17:19182082-19204013"	NA	inner
CUST_19863_PI429285431	7.2141094	P	7.529076	P	0.803869601005972	0	lncRNA	21520-1_{1..1794}	lnc-CDK5-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK5-2:9	chr7	150715707	150717500	-	lnc-CDK5-2	lnc-CDK5-2:9	ENSG00000181652.11	ATG9B	ABCB8	NA	chr7:150725510-150725888	inter
LNCA_21_P0004994	1.0147253	A	2.2478642	A	0.4253909069349	0	lncRNA	TCONS_00012058	NA	NA	NA	NA	XLOC_005589	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005589), lincRNA [TCONS_00012058]"	chr6:4341762-4341703	hs|6p25.1	Agilent_HUMAN_G3V2	TCONS_00012058	TCONS_00012058	chr6	  4341703	  4341762	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32823_PI429285431	0.9157957	A	0.90711373	A	1.00603602686284	0	lncRNA	34458-1_{1..966}	n339471|BC042374|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1909|NULL|-1.0350000|-0.3776535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339471|BC042374|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1909|NULL|-1.0350000|-0.3776535	chr3	122597947	122598912	-	NA	NA	NA	NA	DIRC2	"hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_DIRC2:range=chr3:122514040-1225982255'pad=0,hg19_refFlat_DIRC2:range=chr3:122514040-1225982255'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60chr3:122587947-122599986"	NA	inner
CUST_47109_PI429285431	0.93027896	A	0.91204333	A	1.01272019765643	0	lncRNA	51190-1_{1..568}	"gi|291045275|ref|NR_033390.1| Homo sapiens TYRO protein tyrosine kinase binding protein (TYROBP), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|291045275|ref|NR_033390.1| Homo sapiens TYRO protein tyrosine kinase binding protein (TYROBP), transcript variant 5, non-coding RNA"	Chr19	 36395303	 36395870	-	7305	NR_033390.1	NA	NA	NA	NA	NA	inter
CUST_23962_PI429285431	0.91695094	A	0.9129337	A	1.00278841900808	0	lncRNA	25517-1_{1..559}	lnc-C16orf88-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf88-1:2	chr16	 19777291	 19777849	-	lnc-C16orf88-1	lnc-C16orf88-1:2	ENSG00000261195.1	CTD-2380F24.1	IQCK	NA	chr16:19767291-19787392	inner
CUST_20497_PI429285431	6.3817344	P	6.5352993	P	0.89902622155365	0	lncRNA	22139-1_{1..805}	lnc-FRAT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRAT1-1:1	chr10	 99102564	 99103368	+	lnc-FRAT1-1	lnc-FRAT1-1:1	ENSG00000225850.1	RP11-452K12.4	FRAT2	NA	chr10:99092564-99094458	inter
CUST_14101_PI429285431	6.893156	P	7.4416523	P	0.683732401426859	0	lncRNA	15747-1_{1..529}	lnc-RGL4-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGL4-4:2	chr22	 23854168	 23854696	+	lnc-RGL4-4	lnc-RGL4-4:2	XLOC_014172	linc-RGL4-6	NA	NA	NA	inter
CUST_45512_PI429285431	0.9298571	A	1.4019375	A	0.720924258198591	0	lncRNA	49922-1_{1..561}	"gi|310120437|ref|XR_109007.1| PREDICTED: Homo sapiens CELF2 antisense RNA 1 (CELF2-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120437|ref|XR_109007.1| PREDICTED: Homo sapiens CELF2 antisense RNA 1 (CELF2-AS1), misc_RNA"	Chr10	 11358796	 11359356	-	414196	XR_109007.2	NA	NA	NA	NA	NA	inter
CUST_49325_PI429285431	0.89066464	A	0.89582825	A	0.996427255779903	0	lncRNA	53140-2_{3001..3472}	hg19_lincRNAsTranscripts_TCONS_l2_00022337 range=chr5:61003088-61029193 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022337 range=chr5:61003088-61029193 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 61006088	 61006559	+	NA	NA	NA	NA	C5orf64	NA	chr5:60993088-61002362	inter
CUST_20454_PI429285431	1.4010965	A	2.2388818	A	0.559501808654143	0	lncRNA	22098-1_{1..566}	lnc-AC005323.1.1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC005323.1.1-1:6	chr17	 10526069	 10526634	+	lnc-AC005323.1.1-1	lnc-AC005323.1.1-1:6	ENSG00000214970.2	CTC-297N7.7	MYH3	NA	chr17:10531843-10536172	inter
CUST_47641_PI429285431	4.4694858	P	4.4754453	P	0.995877709440027	0	lncRNA	51629-1_{1..3000}	"gi|324711010|ref|NR_037916.1| Homo sapiens X-linked inhibitor of apoptosis (XIAP), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|324711010|ref|NR_037916.1| Homo sapiens X-linked inhibitor of apoptosis (XIAP), transcript variant 3, non-coding RNA"	ChrX	122994017	122997016	+	331	NR_037916.1	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	inter
CUST_22703_PI429285431	2.2959418	A	2.4907908	A	0.873664333404836	0	lncRNA	24286-1_{1..569}	lnc-CXXC11-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CXXC11-4:5	chr2	242908078	242908646	+	lnc-CXXC11-4	lnc-CXXC11-4:5	ENSG00000233806.2	AC131097.3	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80"	NA	inter
CUST_11611_PI429285431	0.90768474	A	0.9115896	A	0.997297016955333	0	lncRNA	13191-1_{1..706}	lnc-BEST3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BEST3-1:2	chr12	 70132058	 70132763	-	lnc-BEST3-1	lnc-BEST3-1:2	XLOC_010123	linc-BEST3-1	RAB3IP	NA	chr12:70132631-70142348	inter
CUST_31751_PI429285431	7.592931	P	7.794414	P	0.869656151706024	0	lncRNA	33492-1_{1..3000}	n338288|BC010117|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|681|NULL|-0.6074120|-0.2311403	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338288|BC010117|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|681|NULL|-0.6074120|-0.2311403	chr1	156611457	156614456	-	NA	NA	NA	NA	BCAN	NA	chr1:156611740-156624679	inner
CUST_5671_PI429285431	6.5674887	P	6.5296216	P	1.02659497219458	0	lncRNA	5596-1_{1..1532}	"transcript_id ""ENST00000600892.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600892.1"" | genecode_v17"	chr16	 86365450	 86366981	-	ENSG00000168367.5	ENST00000600892.1	RP11-158I3.2	RP11-158I3.2-003	NA	NA	NA	inter
CUST_46130_PI429285431	2.2341375	A	2.7684696	A	0.690478261700187	0	lncRNA	50386-1_{1..1044}	"gi|334724442|ref|NR_031766.2| Homo sapiens tescalcin (TESC), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|334724442|ref|NR_031766.2| Homo sapiens tescalcin (TESC), transcript variant 3, non-coding RNA"	Chr12	117476728	117477771	-	54997	NR_031766.2	NA	NA	NA	NA	NA	inter
CUST_51313_PI429285431	1.3440591	A	1.9907229	A	0.638755715384302	0	lncRNA	54918-1_{1..632}	hg19_lincRNAsTranscripts_TCONS_l2_00008604 range=chr15:42867918-42931120 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008604 range=chr15:42867918-42931120 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 42867918	 42868549	+	NA	NA	NA	NA	STARD9	NA	chr15:42867857-42941120	inner
CUST_35609_PI429285431	3.8421	P	4.2248974	P	0.766949026167652	0	lncRNA	37022-1_{1..1149}	n342746|AJ628245|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5249|NULL|0.8128910|-0.0967444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342746|AJ628245|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5249|NULL|0.8128910|-0.0967444	chr11	  1618406	  1619554	-	NA	NA	NA	NA	KRTAP5-3	NA	chr11:1628795-1629524	inner
CUST_3882_PI429285431	0.90768075	A	0.9040665	A	1.002508347851	0	lncRNA	3851-1_{1..398}	"transcript_id ""ENST00000534492.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534492.1"" | genecode_v17"	chr11	 24280945	 24281342	-	ENSG00000254594.1	ENST00000534492.1	RP11-2F20.1	RP11-2F20.1-001	NA	NA	NA	inter
LNCA_21_P0014551	0.9467236	A	1.5147405	A	0.674543365396209	0	lncRNA	ENST00000556705	XR_110279	XR_110279	NA	NA	LOC100506157	NA	ENST00000556705	THC2519087	NA	"PREDICTED: Homo sapiens hypothetical LOC100506157 (LOC100506157), miscRNA [XR_110279]"	chr14:35433119-35433060	hs|14q13.2	Agilent_HUMAN_G3V2	ENST00000556705	ENST00000556705	chr14	 35433060	 35433119	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23513_PI429285431	3.5495858	P	3.3178475	P	1.17424894710661	0	lncRNA	25080-1_{1..744}	lnc-AKIP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AKIP1-3:1	chr11	  8718015	  8718758	+	lnc-AKIP1-3	lnc-AKIP1-3:1	ENSG00000254665.1	RP11-152H18.3	ST5	"hg19_refFlat_ST5:range=chr11:8715643-87722475'pad=0,hg19_refFlat_ST5:range=chr11:8715643-87722475'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70chr11:8714899-8728154"	NA	inner
CUST_7009_PI429285431	8.605638	P	8.6708555	P	0.955801210607404	0	lncRNA	6956-1_{1..356}	"transcript_id ""ENST00000434938.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434938.2"" | genecode_v17"	chrX	  1515320	  1515675	+	ENSG00000236871.2	ENST00000434938.2	LINC00106	LINC00106-002	SLC25A6	NA	chrX:1505320-1511039	inter
CUST_16554_PI429285431	3.7967248	P	3.7157316	A	1.05774597802591	0	lncRNA	18255-1_{1..299}	lnc-SH2D1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SH2D1B-1:1	chr1	162531028	162531326	-	lnc-SH2D1B-1	lnc-SH2D1B-1:1	XLOC_001072	linc-SH2D1B	UAP1	NA	chr1:162531296-162541146	inter
CUST_35822_PI429285431	0.9040665	A	1.2756058	A	0.772957340955564	0	lncRNA	37227-1_{1..3000}	n344497|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_45|NULL|-1.5164300|-0.3616546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344497|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_45|NULL|-1.5164300|-0.3616546	chr12	 97858899	 97861898	+	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30"	NA	inter
CUST_25185_PI429285431	3.5571263	P	4.0034943	P	0.733888095313062	0	lncRNA	26716-1_{1..425}	lnc-PHLDB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHLDB1-1:1	chr11	118620923	118621347	+	lnc-PHLDB1-1	lnc-PHLDB1-1:1	ENSG00000255422.1	AP002954.4	DDX6	NA	chr11:118610923-118630973	inner
CUST_17770_PI429285431	0.92694557	A	0.91091	A	1.01117701136114	0	lncRNA	19502-1_{1..1443}	lnc-BRMS1L-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BRMS1L-4:1	chr14	 36758889	 36760331	+	lnc-BRMS1L-4	lnc-BRMS1L-4:1	XLOC_010799	linc-PAX9-3	MBIP	NA	chr14:36767764-36769236	inter
LNCA_21_P0005185	3.8536873	P	3.8700259	P	0.988738832503563	0	lncRNA	TCONS_00012833	NA	NA	NA	NA	XLOC_005939	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005939), lincRNA [TCONS_00012833]"	chr6:169828921-169827791	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012833	TCONS_00012833	chr6	169827791	169828921	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5861_PI429285431	5.9634194	P	6.291119	P	0.796805991082941	0	lncRNA	5790-1_{1..2890}	"transcript_id ""ENST00000586231.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586231.1"" | genecode_v17"	chr17	 41463231	 41466120	-	ENSG00000188825.8	ENST00000586231.1	CTD-3014M21.4	CTD-3014M21.4-003	ARL4D	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-56.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr17:41476353-41476567"	NA	inter
CUST_34982_PI429285431	0.9180333	A	1.5392921	A	0.650103443038611	0	lncRNA	36398-1_{1..682}	n341906|BC038189|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4387|NULL|-1.0281000|-0.2716978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341906|BC038189|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4387|NULL|-1.0281000|-0.2716978	chr6	 72313782	 72314463	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37666_PI429285431	10.490312	P	10.70878	P	0.859477632591418	0	lncRNA	38759-1_{1..629}	n346149|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1699|NULL|-1.3944500|-0.1882555	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346149|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1699|NULL|-1.3944500|-0.1882555	chr12	123848355	123848983	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15942_PI429285431	1.9712837	A	2.3271797	A	0.781384206025075	0	lncRNA	17639-1_{1..429}	lnc-POLR3G-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLR3G-1:1	chr5	 89706317	 89706745	+	lnc-POLR3G-1	lnc-POLR3G-1:1	XLOC_004467	linc-POLR3G-1	CETN3	NA	chr5:89696317-89705603	inter
CUST_24367_PI429285431	5.667258	P	5.732176	P	0.95599965322363	0	lncRNA	25920-1_{1..474}	lnc-WWC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-WWC1-1:1	chr5	167155701	167156174	+	lnc-WWC1-1	lnc-WWC1-1:1	ENSG00000253357.1	CTB-78F1.2	ODZ2	NA	chr5:167145701-167166129	inner
CUST_16998_PI429285431	2.1036148	A	2.2796738	A	0.885117566351385	0	lncRNA	18708-1_{1..3000}	lnc-NSUN2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NSUN2-1:2	chr5	  6705221	  6708220	-	lnc-NSUN2-1	lnc-NSUN2-1:2	XLOC_004725	linc-NSUN2-3	PAPD7	NA	chr5:6714718-6717824	inter
CUST_18276_PI429285431	7.4739914	P	5.9151998	P	2.94606977559924	0	lncRNA	20007-2_{3001..5162}	lnc-NKAIN3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKAIN3-3:1	chr8	 64125241	 64127402	+	lnc-NKAIN3-3	lnc-NKAIN3-3:1	ENSG00000185728	YTHDF3	YTHDF3	NA	chr8:64112241-64125346	inner
CUST_41609_PI429285431	0.9273157	A	1.074228	A	0.903181411984931	0	lncRNA	42973-1_{1..75}	ENST00000401124 ncrna:miRNA chromosome:GRCh37:X:145078187:145078261:-1 gene:ENSG00000215943 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401124 ncrna:miRNA chromosome:GRCh37:X:145078187:145078261:-1 gene:ENSG00000215943 gene_biotype:miRNA transcript_biotype:miRNA	chrX	145078187	145078261	-	ENSG00000215943	ENST00000401124	NA	NA	NA	NA	NA	inter
CUST_33107_PI429285431	1.519466	A	0.91412985	A	1.52133318474744	0	lncRNA	34708-1_{1..1292}	n339797|BC065363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2244|NULL|-0.8516620|-0.3033866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339797|BC065363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2244|NULL|-0.8516620|-0.3033866	chr18	 12774648	 12775939	-	NA	NA	NA	NA	PTPN2	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00chr18:12785477-12785922"	NA	inter
CUST_5579_PI429285431	1.413956	A	1.5726893	A	0.895811256561807	0	lncRNA	5508-1_{1..443}	"transcript_id ""ENST00000563061.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563061.1"" | genecode_v17"	chr16	 63764181	 63764623	+	ENSG00000261014.1	ENST00000563061.1	RP11-370P15.2	RP11-370P15.2-001	NA	NA	NA	inter
CUST_35549_PI429285431	7.972558	P	7.464445	P	1.42218880006063	0	lncRNA	36963-1_{1..2256}	n342675|AK090937|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5177|NULL|0.0372628|-0.1863629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342675|AK090937|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5177|NULL|0.0372628|-0.1863629	chr17	 21435875	 21438130	-	NA	NA	NA	NA	C17orf51	NA	chr17:21425875-21454941	inner
CUST_43747_PI429285431	1.0906115	A	0.9189376	A	1.12636460156538	0	lncRNA	48488-2_{3001..6000}	"gi|257153363|ref|NR_028393.1| Homo sapiens TSNAX-DISC1 readthrough (TSNAX-DISC1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|257153363|ref|NR_028393.1| Homo sapiens TSNAX-DISC1 readthrough (TSNAX-DISC1), transcript variant 1, non-coding RNA"	Chr1	231667399	231670398	+	100303453	NR_028393.1	NA	NA	NA	NA	NA	inter
CUST_29630_PI429285431	4.3045163	P	4.4413633	P	0.909504701041091	0	lncRNA	31391-1_{1..544}	n333191|AF436089|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079647_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079647_08|-0.6452900|-0.1488765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333191|AF436089|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079647_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079647_08|-0.6452900|-0.1488765	chr6	  1096103	  1096646	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26548_PI429285431	8.339062	P	8.419702	P	0.945638055198952	0	lncRNA	28052-2_{3001..5582}	lnc-ATL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ATL3-1:1	chr11	 63538956	 63541537	-	lnc-ATL3-1	lnc-ATL3-1:1	ENSG00000188070.7	C11orf95	RTN3	NA	chr11:63525956-63527363	inner
CUST_40558_PI429285431	0.92129904	A	1.2934139	A	0.772649032835175	0	lncRNA	41316-1_{1..3000}	n409752|NR_034154|lncRNA|Homosapiens||RefGeneNoncode|NR_034154||1.0805000|-0.2479988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409752|NR_034154|lncRNA|Homosapiens||RefGeneNoncode|NR_034154||1.0805000|-0.2479988	chr11	111164113	111167112	-	NA	NA	NA	NA	C11orf53	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90chr11:111154113-111156973"	NA	inter
CUST_46527_PI429285431	1.080223	A	0.90657026	A	1.12791061411203	0	lncRNA	50717-1_{1..1223}	"gi|213418017|ref|NR_024474.1| Homo sapiens ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 3 (UBE2Q2P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|213418017|ref|NR_024474.1| Homo sapiens ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 3 (UBE2Q2P3), non-coding RNA"	Chr15	 83023773	 83024995	+	100133144	NR_024474.1	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90"	NA	inter
CUST_15196_PI429285431	5.2501235	P	5.3609185	P	0.92607760433502	0	lncRNA	16864-1_{1..517}	lnc-NBAS-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NBAS-5:1	chr2	 16202942	 16203458	-	lnc-NBAS-5	lnc-NBAS-5:1	XLOC_001998	linc-NBAS-2	NA	NA	NA	inter
CUST_10637_PI429285431	0.9247701	A	1.5881064	A	0.631416427189754	0	lncRNA	12170-1_{1..576}	lnc-KLHDC10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHDC10-1:1	chr7	129781995	129782570	+	lnc-KLHDC10-1	lnc-KLHDC10-1:1	XLOC_006245	linc-C7orf45-2	KLHDC10	NA	chr7:129771995-129775560	inter
CUST_6558_PI429285431	8.871399	P	8.78263	P	1.06346238085556	0	lncRNA	6506-1_{1..270}	"transcript_id ""ENST00000602721.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602721.1"" | genecode_v17"	chr19	 49843506	 49843775	-	ENSG00000197813.4	ENST00000602721.1	CTC-301O7.4	CTC-301O7.4-002	CD37	"hg19_refFlat_CD37:range=chr19:49840228-498435855'pad=0,hg19_refFlat_CD37:range=chr19:49840228-498435855'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CD37:range=chr19:49838798-498435855'pad=0,hg19_refFlat_CD37:range=chr19:49838798-498435855'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30chr19:49838677-49843863"	NA	inner
CUST_2056_PI429285431	0.8957513	A	0.9126536	A	0.988352580945197	0	lncRNA	2048-1_{1..1800}	"transcript_id ""ENST00000508201.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508201.1"" | genecode_v17"	chr5	  5034472	  5036271	+	ENSG00000215231.3	ENST00000508201.1	CTD-2247C11.3	CTD-2247C11.3-001	NA	NA	NA	inter
CUST_3316_PI429285431	0.9123527	A	1.0943296	A	0.881494272015896	0	lncRNA	3295-1_{1..884}	"transcript_id ""ENST00000524275.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524275.1"" | genecode_v17"	chr8	132320792	132321675	+	ENSG00000253507.1	ENST00000524275.1	CTD-2501M5.1	CTD-2501M5.1-001	NA	NA	NA	inter
CUST_14853_PI429285431	4.7707763	P	4.5178094	P	1.1916552339098	0	lncRNA	16516-1_{1..670}	lnc-C20orf196-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf196-3:2	chr20	  5483193	  5483862	+	lnc-C20orf196-3	lnc-C20orf196-3:2	XLOC_013448	linc-C20orf196-2	NA	NA	NA	inter
CUST_27883_PI429285431	1.2562926	A	1.693157	A	0.738738463116156	0	lncRNA	29477-1_{1..2333}	n325120|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324253|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324253|-0.7205310|-0.3230536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325120|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324253|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324253|-0.7205310|-0.3230536	chr2	161809495	161811827	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6427_PI429285431	3.2953296	P	3.5884278	P	0.816147491505536	0	lncRNA	6367-1_{1..537}	"transcript_id ""ENST00000591285.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591285.1"" | genecode_v17"	chr19	 29374337	 29374873	+	ENSG00000267528.1	ENST00000591285.1	AC011524.1	AC011524.1-001	NA	NA	NA	inter
CUST_42715_PI429285431	5.6442447	P	5.7092495	P	0.955942137067185	0	lncRNA	45648-1_{1..91}	ENST00000516540 ncrna:snoRNA chromosome:GRCh37:17:19565313:19565403:1 gene:ENSG00000252349 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516540 ncrna:snoRNA chromosome:GRCh37:17:19565313:19565403:1 gene:ENSG00000252349 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 19565313	 19565403	+	ENSG00000252349	ENST00000516540	NA	NA	ALDH3A2	NA	chr17:19555313-19575403	inner
CUST_2049_PI429285431	1.1287153	A	0.9078638	A	1.16542123240694	0	lncRNA	2041-1_{1..1676}	"transcript_id ""ENST00000503188.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503188.1"" | genecode_v17"	chr5	  4512375	  4514050	+	ENSG00000231291.3	ENST00000503188.1	RP11-445O3.1	RP11-445O3.1-001	NA	NA	NA	inter
CUST_25156_PI429285431	4.359621	P	4.577974	P	0.859546145939293	0	lncRNA	26694-1_{1..666}	lnc-EID1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EID1-2:1	chr15	 49240022	 49240687	+	lnc-EID1-2	lnc-EID1-2:1	ENSG00000259602.1	RP11-138E16.1	SHC4	NA	chr15:49230022-49250228	inner
CUST_36325_PI429285431	0.91072994	A	0.9259214	A	0.98952532783522	0	lncRNA	37556-1_{1..812}	n344851|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_400|NULL|-1.3100200|-0.1750583	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344851|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_400|NULL|-1.3100200|-0.1750583	chr5	139017754	139018565	-	NA	NA	NA	NA	UBE2D2	NA	chr5:139007754-139008019	inter
CUST_9701_PI429285431	1.5580975	A	2.3780282	A	0.566469152396545	0	lncRNA	11217-1_{1..1359}	lnc-WDR7-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR7-8:1	chr18	 53505062	 53506420	+	lnc-WDR7-8	lnc-WDR7-8:1	XLOC_012683	linc-WDR7-5	NA	NA	NA	inter
CUST_25683_PI429285431	0.9090328	A	0.9087142	A	1.00022086107794	0	lncRNA	27212-1_{1..434}	lnc-VAX2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VAX2-2:1	chr2	 70918740	 70919173	+	lnc-VAX2-2	lnc-VAX2-2:1	ENSG00000235035.1	AC007395.3	ADD2	NA	chr2:70908740-70928956	inner
CUST_32171_PI429285431	0.90834534	A	0.90485847	A	1.00241983720086	0	lncRNA	33871-1_{1..1858}	n338743|AK057270|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1164|NULL|1.9255500|-0.2625227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338743|AK057270|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1164|NULL|1.9255500|-0.2625227	chr13	 53919345	 53921202	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32370_PI429285431	2.108925	A	1.9600086	A	1.1087363936781	0	lncRNA	34047-1_{1..1249}	n338957|AB005217|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1385|NULL|6.7678500|-0.0717526	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338957|AB005217|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1385|NULL|6.7678500|-0.0717526	chr2	133541151	133542399	-	NA	NA	NA	NA	NCKAP5	NA	chr2:133531151-133552403	inner
CUST_7686_PI429285431	5.882398	P	5.922762	P	0.972409572103824	0	lncRNA	9319-2_{3001..4643}	lnc-RP11-582J16.5.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-582J16.5.1-2:1	chr8	 22449664	 22451306	-	lnc-RP11-582J16.5.1-2	lnc-RP11-582J16.5.1-2:1	ENSG00000251263	ENST00000502542	PDLIM2	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PDLIM2:range=chr8:22436293-224514235'pad=0,hg19_refFlat_PDLIM2:range=chr8:22436293-224514235'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-59.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PDLIM2:range=chr8:22438118-224513195'pad=0,hg19_refFlat_PDLIM2:range=chr8:22438118-224513195'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.70;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PDLIM2:range=chr8:22438118-224521625'pad=0,hg19_refFlat_PDLIM2:range=chr8:22438118-224521625'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00chr8:22436664-22455538"	NA	inner
CUST_39129_PI429285431	12.796163	P	13.101716	P	0.809132008391816	0	lncRNA	40105-1_{1..2554}	n385725|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004cos.3||3.3302700|-0.3485624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n385725|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004cos.3||3.3302700|-0.3485624	chrM	     1708	     4261	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21606_PI429285431	0.91463566	A	0.9111061	A	1.00244949969694	0	lncRNA	23219-1_{1..437}	lnc-NCBP2L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NCBP2L-1:1	chrX	107037379	107037815	+	lnc-NCBP2L-1	lnc-NCBP2L-1:1	ENSG00000249615.1	RP5-820B18.3	NA	NA	NA	inter
CUST_405_PI429285431	1.6487145	A	1.5960995	A	1.03714312589126	0	lncRNA	397-1_{1..1338}	"transcript_id ""ENST00000432361.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432361.1"" | genecode_v17"	chr1	143382245	143383582	-	ENSG00000185044.9	ENST00000432361.1	RP11-435B5.4	RP11-435B5.4-004	NA	NA	NA	inter
CUST_23550_PI429285431	1.361608	A	1.097782	A	1.20065861018765	0	lncRNA	25117-1_{1..244}	lnc-GLIS2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLIS2-2:1	chr16	  4082790	  4083033	+	lnc-GLIS2-2	lnc-GLIS2-2:1	ENSG00000263159.1	RP11-462G12.4	ADCY9	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80chr16:4072790-4092937"	NA	inner
CUST_25267_PI429285431	0.89699984	A	0.89165753	A	1.00370987171563	0	lncRNA	26797-1_{1..598}	lnc-PAX6-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAX6-1:3	chr11	 31789183	 31789780	-	lnc-PAX6-1	lnc-PAX6-1:3	ENSG00000228061.1	Z83001.1	ELP4	NA	chr11:31779183-31799373	inner
CUST_38840_PI429285431	4.4428096	P	4.5180945	P	0.949154665626488	0	lncRNA	39831-1_{1..2082}	n384655|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jvo.3||-0.4649910|-0.2455932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384655|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jvo.3||-0.4649910|-0.2455932	chr5	 68483211	 68485292	-	NA	NA	NA	NA	CCNB1	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.61;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30chr5:68473211-68474072"	NA	inter
CUST_2559_PI429285431	4.79088	P	5.937646	P	0.451636502968546	0	lncRNA	2547-1_{1..461}	"transcript_id ""ENST00000455530.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455530.1"" | genecode_v17"	chr6	 76164660	 76165120	+	ENSG00000238156.1	ENST00000455530.1	RP11-415D17.4	RP11-415D17.4-001	FILIP1	NA	chr6:76154660-76178616	inner
CUST_50917_PI429285431	3.7337124	P	3.2278833	P	1.41993914421781	0	lncRNA	54558-1_{1..554}	hg19_lincRNAsTranscripts_TCONS_l2_00006127 range=chr12:9554190-9559064 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006127 range=chr12:9554190-9559064 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  9554190	  9554743	-	NA	NA	NA	NA	LOC728715	NA	chr12:9549658-9555094	inter
CUST_22274_PI429285431	1.9236186	A	2.1151636	A	0.875667455874173	0	lncRNA	23875-1_{1..759}	lnc-ZNF574-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ZNF574-1:1	chr19	 42640824	 42641582	+	lnc-ZNF574-1	lnc-ZNF574-1:1	ENSG00000254887.1	CTC-378H22.1	POU2F2	NA	chr19:42630824-42636625	inter
CUST_11995_PI429285431	1.5302017	A	2.3748326	A	0.556853256576473	0	lncRNA	13576-2_{3001..5065}	lnc-C10orf136-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf136-1:13	chr10	 44478902	 44480966	+	lnc-C10orf136-1	lnc-C10orf136-1:13	XLOC_008473	linc-TMEM72-2	NA	NA	NA	inter
CUST_41313_PI429285431	0.9170182	A	0.9127702	A	1.00294882848934	0	lncRNA	42342-1_{1..92}	ENST00000385207 ncrna:miRNA chromosome:GRCh37:14:101351034:101351125:1 gene:ENSG00000207942 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385207 ncrna:miRNA chromosome:GRCh37:14:101351034:101351125:1 gene:ENSG00000207942 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101351034	101351125	+	ENSG00000207942	ENST00000385207	NA	NA	RTL1	"hg19_refFlat_RTL1:range=chr14:101347049-1013511255'pad=0,hg19_refFlat_RTL1:range=chr14:101347049-1013511255'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20chr14:101346992-101351184"	NA	inter
CUST_14663_PI429285431	4.5104265	P	5.181648	P	0.627974768884717	0	lncRNA	16332-1_{1..984}	lnc-FAM120B-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM120B-6:2	chr6	170455748	170456731	+	lnc-FAM120B-6	lnc-FAM120B-6:2	XLOC_005560	linc-FAM120B-5	NA	NA	NA	inter
CUST_34617_PI429285431	1.3506911	A	1.1929014	A	1.11557669413809	0	lncRNA	36072-1_{1..418}	n341504|BC039537|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3974|NULL|-1.1427200|-0.3298687	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341504|BC039537|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3974|NULL|-1.1427200|-0.3298687	chr8	 54955551	 54955968	-	NA	NA	NA	NA	LYPLA1	"hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30chr8:54958938-54967513"	NA	inter
CUST_51897_PI429285431	3.1519601	A	3.186345	P	0.976447985355784	0	lncRNA	55443-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00012719 range=chr19:56118128-56130307 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012719 range=chr19:56118128-56130307 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 56118128	 56121127	+	NA	NA	NA	NA	ZNF784	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-63.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-58.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60chr19:56132107-56135941"	NA	inner
CUST_40388_PI429285431	1.6467876	A	1.4410073	A	1.15330996053002	0	lncRNA	41181-1_{1..1313}	n409236|NR_033400|lncRNA|Homosapiens||RefGeneNoncode|NR_033400||4.6364200|-0.1192896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409236|NR_033400|lncRNA|Homosapiens||RefGeneNoncode|NR_033400||4.6364200|-0.1192896	chr19	  1952525	  1953837	-	NA	NA	NA	NA	CSNK1G2	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70chr19:1942525-1964548"	NA	inner
LNCA_21_P0014872	4.9417596	P	4.782282	P	1.11688264154072	0	lncRNA	XR_132769	XR_132769	XR_132769	NA	Hs.640048	LOC100505923	uncharacterized LOC100505923	NA	NP852804	NA	"PREDICTED: Homo sapiens hypothetical LOC100505923 (LOC100505923), miscRNA [XR_132769]"	chr12:48760960-48761019	hs|12q13.11	Agilent_HUMAN_G3V2	XR_132769	XR_132769	chr12	 48760960	 48761019	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31199_PI429285431	1.8537964	A	1.2778077	A	1.49069871076142	0	lncRNA	32993-1_{1..2815}	n337641|BC038597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|20|NULL|-0.5944470|-0.2488490	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337641|BC038597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|20|NULL|-0.5944470|-0.2488490	chrX	 18917182	 18919996	+	NA	NA	NA	NA	PHKA2	"hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PHKA2:range=chrX:18911603-190020505'pad=0,hg19_refFlat_PHKA2:range=chrX:18911603-190020505'pad=0 3'pad=0 strand=- repeatMasking=none,-94.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20chrX:18910416-18931344"	NA	inner
LNCA_21_P0004301	0.92490333	A	0.9123839	A	1.00871556892861	0	lncRNA	TCONS_00010100	NA	NA	NA	NA	XLOC_004565	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004565), lincRNA [TCONS_00010100]"	chr5:135148582-135160117	hs|5q31.1	Agilent_HUMAN_G3V2	TCONS_00010100	TCONS_00010100	chr5	135148582	135160117	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009056	5.818173	P	5.93455	P	0.922501396329741	0	lncRNA	TCONS_00024721	NA	NA	NA	NA	XLOC_012004	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012004), lincRNA [TCONS_00024721]"	chr16:72460032-72459973	hs|16q22.2	Agilent_HUMAN_G3V2	TCONS_00024721	TCONS_00024721	chr16	 72459973	 72460032	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6736_PI429285431	5.7170744	P	5.963768	P	0.842825810091631	0	lncRNA	6684-1_{1..377}	"transcript_id ""ENST00000442780.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442780.1"" | genecode_v17"	chr20	 55680797	 55681173	+	ENSG00000231078.1	ENST00000442780.1	RP11-560A15.4	RP11-560A15.4-001	NA	NA	NA	inter
CUST_30787_PI429285431	1.5986477	A	1.7653983	A	0.890846888805774	0	lncRNA	32574-1_{1..400}	n336660|Z68955|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327592_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327592_03|2.2525300|-0.2666332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336660|Z68955|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327592_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327592_03|2.2525300|-0.2666332	chr2	 89998819	 89999218	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_498_PI429285431	8.970379	P	8.974426	P	0.997198764163834	0	lncRNA	489-1_{1..541}	"transcript_id ""ENST00000438428.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438428.1"" | genecode_v17"	chr1	181144473	181145013	+	ENSG00000237292.1	ENST00000438428.1	RP11-540K16.1	RP11-540K16.1-002	NA	NA	NA	inter
CUST_371_PI429285431	0.9005431	A	0.89661515	A	1.00272635723853	0	lncRNA	363-1_{1..539}	"transcript_id ""ENST00000437308.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437308.1"" | genecode_v17"	chr1	116995656	116996194	-	ENSG00000233154.1	ENST00000437308.1	RP4-655J12.4	RP4-655J12.4-005	NA	NA	NA	inter
CUST_29063_PI429285431	0.8928235	A	0.9046282	A	0.99185099015013	0	lncRNA	30791-1_{1..591}	n326553|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001251|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001251|-1.0708500|-0.3960913	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326553|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001251|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001251|-1.0708500|-0.3960913	chr1	 80774027	 80774617	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003144	4.341697	P	4.6130424	P	0.828546515903556	0	lncRNA	TCONS_00006577	NA	NA	NA	NA	XLOC_003200	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003200), lincRNA [TCONS_00006577]"	chr3:106403935-106403876	hs|3q13.12	Agilent_HUMAN_G3V2	TCONS_00006577	TCONS_00006577	chr3	106403876	106403935	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44512_PI429285431	4.1388187	P	4.8674126	P	0.603491811095486	0	lncRNA	49111-1_{1..3000}	"gi|397139086|ref|XR_158785.1| PREDICTED: Homo sapiens integral membrane glycoprotein-like (LOC646652), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139086|ref|XR_158785.1| PREDICTED: Homo sapiens integral membrane glycoprotein-like (LOC646652), misc_RNA"	NA	NA	NA	NA	NA	XR_158785.1	NA	NA	NA	NA	NA	Unknown
CUST_34094_PI429285431	6.0547996	P	7.3133764	P	0.417956064665184	0	lncRNA	35620-2_{3001..6000}	n340916|BX537550|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3381|NULL|1.8330300|-0.1877632	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340916|BX537550|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3381|NULL|1.8330300|-0.1877632	chr17	 78443634	 78446633	-	NA	NA	NA	NA	NPTX1	NA	chr17:78440633-78450404	inner
CUST_2058_PI429285431	4.8198686	P	4.3131495	P	1.42081537632905	0	lncRNA	2050-1_{1..545}	"transcript_id ""ENST00000511514.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511514.1"" | genecode_v17"	chr5	  5046909	  5047453	-	ENSG00000251426.1	ENST00000511514.1	CTD-2247C11.4	CTD-2247C11.4-001	NA	NA	NA	inter
CUST_29209_PI429285431	9.433125	P	9.198899	P	1.17627550090167	0	lncRNA	30956-1_{1..1629}	n326730|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000002186|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000002186|-1.0386200|-0.1641284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326730|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000002186|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000002186|-1.0386200|-0.1641284	chr1	  2471218	  2472846	-	NA	NA	NA	NA	HES5	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90chr1:2461218-2461684"	NA	inter
CUST_8179_PI429285431	2.5764048	A	2.9416957	A	0.776312326306712	0	lncRNA	9779-1_{1..755}	lnc-ENDOD1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ENDOD1-1:9	chr11	 94966618	 94967372	+	lnc-ENDOD1-1	lnc-ENDOD1-1:9	ENSG00000245552	RP11-712B9.2	SESN3	NA	chr11:94956618-94964246	inter
CUST_28812_PI429285431	7.7650876	P	7.486148	P	1.21330276294304	0	lncRNA	30520-1_{1..720}	n326224|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091109|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091109|-0.1580070|-0.2903005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326224|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091109|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091109|-0.1580070|-0.2903005	chr1	220120945	220121664	-	NA	NA	NA	NA	EPRS	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70chr1:220141942-220168677"	NA	inner
CUST_18292_PI429285431	4.040064	P	4.005148	P	1.02449717060088	0	lncRNA	20022-1_{1..657}	lnc-LRRC47-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LRRC47-1:5	chr1	  3654345	  3655001	-	lnc-LRRC47-1	lnc-LRRC47-1:5	ENSG00000244553	RP5-1092A11.3	TP73	NA	chr1:3644345-3652765	inter
CUST_32144_PI429285431	6.334416	P	6.2530174	P	1.05804324838535	0	lncRNA	33844-1_{1..950}	n338711|CR590107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1131|NULL|4.0839300|-0.3503295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338711|CR590107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1131|NULL|4.0839300|-0.3503295	chr13	 48627460	 48628409	-	NA	NA	NA	NA	MED4	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90chr13:48650092-48669240"	NA	inner
CUST_25693_PI429285431	7.8989754	P	7.5824676	P	1.24531248351049	0	lncRNA	27222-1_{1..752}	lnc-NID1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NID1-4:1	chr1	235990642	235991393	-	lnc-NID1-4	lnc-NID1-4:1	ENSG00000226135.1	LYST-IT1	LYST	NA	chr1:235980642-236001238	inner
CUST_9298_PI429285431	5.2472157	P	5.5521097	P	0.80950169136686	0	lncRNA	10803-1_{1..1401}	lnc-ZFC3H1-6:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFC3H1-6:8	chr12	 72649182	 72650582	-	lnc-ZFC3H1-6	lnc-ZFC3H1-6:8	XLOC_010128	linc-ZFC3H1-3	NA	NA	NA	inter
CUST_51147_PI429285431	9.368644	P	9.212308	P	1.11445317390235	0	lncRNA	54770-1_{1..1775}	hg19_lincRNAsTranscripts_TCONS_00090080_MEG3 range=chr14:101292445-101327368 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00090080_MEG3 range=chr14:101292445-101327368 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	101292445	101294219	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35381_PI429285431	1.0798938	A	3.134318	P	0.240744676209612	0	lncRNA	36789-1_{1..2466}	n342429|AL137712|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4922|NULL|0.8088340|-0.1602131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n342429|AL137712|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4922|NULL|0.8088340|-0.1602131	chr2	 95421070	 95423535	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005011	2.7290225	A	3.8829894	P	0.449387873570372	0	lncRNA	TCONS_00012106	NA	NA	NA	NA	XLOC_005635	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005635), lincRNA [TCONS_00012106]"	chr6:20331558-20331499	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00012106	TCONS_00012106	chr6	 20331499	 20331558	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29286_PI429285431	8.305187	P	8.669735	P	0.776712182773117	0	lncRNA	31037-1_{1..445}	n332409|AB451448|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000487661|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000487661|2.1486700|-0.1532000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332409|AB451448|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000487661|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000487661|2.1486700|-0.1532000	chr1	 26227510	 26227954	-	NA	NA	NA	NA	STMN1	NA	chr1:26217510-26233368	inner
CUST_17701_PI429285431	8.180381	P	8.001783	P	1.13178349216927	0	lncRNA	19430-1_{1..786}	lnc-LYZL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYZL1-2:1	chr10	 29524097	 29524882	+	lnc-LYZL1-2	lnc-LYZL1-2:1	XLOC_008429	linc-LYZL1-1	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90"	NA	inter
CUST_24095_PI429285431	2.3078465	A	2.1389399	A	1.12420614037708	0	lncRNA	25646-1_{1..472}	lnc-NPR2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NPR2-1:2	chr9	 35790153	 35790624	+	lnc-NPR2-1	lnc-NPR2-1:2	ENSG00000227388.2	RP11-112J3.16	NPR2	NA	chr9:35792406-35800429	inter
CUST_34871_PI429285431	0.90185606	A	0.8957504	A	1.00424108908546	0	lncRNA	36297-1_{1..2107}	n341785|BC034568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4262|NULL|0.1281010|-0.2543828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341785|BC034568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4262|NULL|0.1281010|-0.2543828	chr9	127534005	127536111	+	NA	NA	NA	NA	NR6A1	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40chr9:127524005-127533576"	NA	inter
CUST_40755_PI429285431	4.887917	P	3.9374313	P	1.93252315465435	0	lncRNA	41481-1_{1..2992}	n410472|NR_037618|lncRNA|Homosapiens||RefGeneNoncode|NR_037618||1.9787300|-0.4002822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410472|NR_037618|lncRNA|Homosapiens||RefGeneNoncode|NR_037618||1.9787300|-0.4002822	chr6	  8013799	  8016790	-	NA	NA	NA	NA	MUTED	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-12.50chr6:8013800-8064647"	NA	inter
CUST_37132_PI429285431	2.0377405	A	2.4707832	A	0.740697975962855	0	lncRNA	38255-1_{1..780}	n345573|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1122|NULL|-1.3407800|-0.1168680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345573|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1122|NULL|-1.3407800|-0.1168680	chr2	232220509	232221288	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_22480_PI429285431	0.91030264	A	0.9027777	A	1.0052295173851	0	lncRNA	24067-1_{1..669}	lnc-DCBLD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DCBLD2-1:1	chr3	 98451270	 98451938	-	lnc-DCBLD2-1	lnc-DCBLD2-1:1	ENSG00000239445.1	ST3GAL6-AS1	ST3GAL6	NA	chr3:98451572-98461495	inter
CUST_18973_PI429285431	6.991693	P	6.439422	P	1.46639218265954	0	lncRNA	20665-1_{1..817}	lnc-GTF2F2-2:19	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2F2-2:19	chr13	 45964893	 45965709	+	lnc-GTF2F2-2	lnc-GTF2F2-2:19	ENSG00000170919	XXyac-R12DG2.2	SLC25A30	"hg19_refFlat_RCN1:range=chr11:32112743-321260185'pad=0,hg19_refFlat_RCN1:range=chr11:32112743-321260185'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30chr13:45967451-45975014"	NA	inter
CUST_45672_PI429285431	5.523011	P	5.820976	P	0.813398931073914	0	lncRNA	50048-1_{1..3000}	"gi|387165116|ref|NR_048560.1| Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) (NFKB2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387165116|ref|NR_048560.1| Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) (NFKB2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_048560.1	NA	NA	NA	NA	NA	Unknown
CUST_32869_PI429285431	1.1368343	A	1.5910455	A	0.729909144146526	0	lncRNA	34498-1_{1..2404}	n339534|AK096268|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1975|NULL|0.4066840|-0.1821854	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339534|AK096268|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1975|NULL|0.4066840|-0.1821854	chr21	 45550939	 45553342	-	NA	NA	NA	NA	C21orf33	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60chr21:45553494-45563342"	NA	inner
CUST_18107_PI429285431	9.326326	P	9.258802	P	1.04791667088173	0	lncRNA	19842-1_{1..479}	lnc-WDR63-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR63-1:1	chr1	 85463140	 85463618	+	lnc-WDR63-1	lnc-WDR63-1:1	XLOC_000274	linc-WDR63	MCOLN2	NA	chr1:85453140-85462796	inter
CUST_14845_PI429285431	5.2421927	P	5.097	P	1.10587835503241	0	lncRNA	16507-1_{1..267}	lnc-KIAA1328-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1328-2:1	chr18	 36906858	 36907124	+	lnc-KIAA1328-2	lnc-KIAA1328-2:1	XLOC_012663	linc-PIK3C3-3	NA	NA	NA	inter
CUST_24403_PI429285431	0.9578166	A	0.9741739	A	0.988726016699935	0	lncRNA	25956-1_{1..920}	lnc-AC018816.3.1-8:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC018816.3.1-8:8	chr3	  6706516	  6707435	-	lnc-AC018816.3.1-8	lnc-AC018816.3.1-8:8	ENSG00000226258.2	GRM7-AS3	NA	NA	NA	inter
CUST_35088_PI429285431	2.9045854	A	2.6473818	A	1.1951598596113	0	lncRNA	36495-1_{1..545}	n342050|AF086044|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4531|NULL|-1.1250000|-0.3953951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342050|AF086044|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4531|NULL|-1.1250000|-0.3953951	chr12	121625344	121625888	+	NA	NA	NA	NA	P2RX7	NA	chr12:121615344-121624354	inter
CUST_15046_PI429285431	0.9270789	A	0.92623705	A	1.00058369623834	0	lncRNA	16709-1_{1..362}	lnc-SOCS6-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOCS6-4:1	chr18	 68870468	 68870829	+	lnc-SOCS6-4	lnc-SOCS6-4:1	XLOC_012711	linc-C18orf55-7	NA	NA	NA	inter
CUST_46133_PI429285431	0.9433811	A	1.073469	A	0.913775774334483	0	lncRNA	50388-2_{3001..3819}	"gi|300068993|ref|NR_033949.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|300068993|ref|NR_033949.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_033949.1	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60"	NA	Unknown
CUST_22470_PI429285431	1.0562955	A	1.2521359	A	0.873064169641638	0	lncRNA	24057-1_{1..517}	lnc-RP11-1085N6.3.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-1085N6.3.1-3:1	chr14	 56777427	 56777943	-	lnc-RP11-1085N6.3.1-3	lnc-RP11-1085N6.3.1-3:1	ENSG00000259483.1	RP11-930O11.2	PELI2	NA	chr14:56767427-56768031	inter
CUST_19667_PI429285431	3.7150397	P	3.700137	P	1.0103833006849	0	lncRNA	21323-1_{1..496}	lnc-MAT2B-3:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAT2B-3:11	chr5	163969076	163969571	+	lnc-MAT2B-3	lnc-MAT2B-3:11	ENSG00000241956.5	CTC-340A15.2	NA	NA	NA	inter
CUST_47669_PI429285431	1.0198617	A	1.4177232	A	0.758982485979663	0	lncRNA	51651-1_{1..722}	"gi|225690539|ref|NR_027401.1| Homo sapiens family with sequence similarity 223, member A (non-protein coding) (FAM223A), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225690539|ref|NR_027401.1| Homo sapiens family with sequence similarity 223, member A (non-protein coding) (FAM223A), non-coding RNA"	ChrX	153799479	153800200	+	100132967	NR_027401.1	NA	NA	NA	NA	NA	inter
CUST_24655_PI429285431	1.074655	A	1.2633071	A	0.87742511069476	0	lncRNA	26204-1_{1..726}	lnc-NPY2R-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPY2R-1:2	chr4	156250861	156251586	+	lnc-NPY2R-1	lnc-NPY2R-1:2	ENSG00000250910.1	RP11-27G13.2	NA	NA	NA	inter
CUST_10906_PI429285431	1.3201015	A	0.9203313	A	1.31929774940052	0	lncRNA	12450-1_{1..387}	lnc-FAM70A-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM70A-1:10	chrX	119269833	119270219	-	lnc-FAM70A-1	lnc-FAM70A-1:10	XLOC_008223	linc-RHOXF1-2	NA	NA	NA	inter
CUST_43063_PI429285431	3.148994	A	3.2378154	P	0.940290599600579	0	lncRNA	46912-1_{1..135}	ENST00000516811 ncrna:snRNA chromosome:GRCh37:3:195249885:195250019:-1 gene:ENSG00000252620 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516811 ncrna:snRNA chromosome:GRCh37:3:195249885:195250019:-1 gene:ENSG00000252620 gene_biotype:snRNA transcript_biotype:snRNA	chr3	195249885	195250019	-	ENSG00000252620	ENST00000516811	NA	NA	PPP1R2	NA	chr3:195241221-195260019	inner
CUST_13340_PI429285431	2.025539	A	1.6853836	A	1.26589294237601	0	lncRNA	14977-1_{1..922}	lnc-NETO1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NETO1-1:7	chr18	 70931475	 70932396	-	lnc-NETO1-1	lnc-NETO1-1:7	XLOC_012877	linc-NETO1-3	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00"	NA	inter
CUST_36716_PI429285431	0.90435076	A	0.90376663	A	1.00040497004082	0	lncRNA	37895-1_{1..1663}	n345202|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_751|NULL|-1.3007700|-0.4305772	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345202|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_751|NULL|-1.3007700|-0.4305772	chr13	 73689189	 73690851	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45460_PI429285431	1.9754311	A	0.9146209	A	2.08610272271927	0	lncRNA	49876-1_{1..3000}	"gi|380036071|ref|NR_026964.2| Homo sapiens uncharacterized LOC26102 (DKFZP434A062), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|380036071|ref|NR_026964.2| Homo sapiens uncharacterized LOC26102 (DKFZP434A062), non-coding RNA"	NW_003315927.1	    13207	    16206	-	26102	NR_026964.3	NA	NA	NA	NA	NA	Unknown
CUST_47258_PI429285431	4.617818	P	5.2309422	P	0.653779388710407	0	lncRNA	51330-1_{1..888}	"gi|52145316|ref|NR_002165.1| Homo sapiens high mobility group box 3 pseudogene 1 (HMGB3P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|52145316|ref|NR_002165.1| Homo sapiens high mobility group box 3 pseudogene 1 (HMGB3P1), non-coding RNA"	Chr20	 33421378	 33422265	-	128872	NR_002165.1	NA	NA	NA	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-23.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.16;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10"	NA	inter
LNCA_19_P00812723	7.003244	P	7.120872	P	0.921701817066622	0	lncRNA	TCONS_00026739	NA	NA	NA	NA	XLOC_012885	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012885), lincRNA [TCONS_00026739]"	chr18:72880197-72880138	hs|18q22.3	Agilent_HUMAN_G3V2	TCONS_00026739	TCONS_00026739	chr18	 72880138	 72880197	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30845_PI429285431	2.8257663	A	2.9290984	A	0.930880511890086	0	lncRNA	32633-1_{1..290}	n336822|AF071509|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330060|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330060|-0.2033730|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336822|AF071509|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330060|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330060|-0.2033730|-1.0000000	chr8	 54870537	 54870826	+	NA	NA	NA	NA	TCEA1	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-20.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-18.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-25.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr8:54879116-54880827"	NA	inner
CUST_41028_PI429285431	5.242778	P	5.1072807	P	1.09847139392309	0	lncRNA	41687-1_{1..1014}	n411655|NR_040117|lncRNA|Homosapiens||RefGeneNoncode|NR_040117||6.2652300|-0.0692877	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411655|NR_040117|lncRNA|Homosapiens||RefGeneNoncode|NR_040117||6.2652300|-0.0692877	chr9	 90472957	 90473970	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17635_PI429285431	0.9203904	A	0.915998	A	1.00304921911578	0	lncRNA	19363-1_{1..430}	lnc-CPN2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPN2-3:1	chr3	193848923	193849352	-	lnc-CPN2-3	lnc-CPN2-3:1	XLOC_003383	linc-ATP13A4-6	HES1	NA	chr3:193853931-193856401	inter
CUST_2454_PI429285431	4.3900914	P	4.385667	P	1.00307146770615	0	lncRNA	2446-1_{1..1039}	"transcript_id ""ENST00000513535.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000513535.1"" | genecode_v17"	chr5	180111766	180112804	+	ENSG00000248717.1	ENST00000513535.1	RP11-451H23.3	RP11-451H23.3-001	OR2Y1	NA	chr5:180119835-180123546	inter
CUST_4059_PI429285431	1.0769334	A	2.1860588	A	0.463574977225149	0	lncRNA	4021-1_{1..404}	"transcript_id ""ENST00000543403.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000543403.1"" | genecode_v17"	chr11	 96241589	 96241992	+	ENSG00000256684.1	ENST00000543403.1	RP11-49K4.2	RP11-49K4.2-001	NA	NA	NA	inter
CUST_11245_PI429285431	1.0973719	A	1.2166663	A	0.920637810354604	0	lncRNA	12803-1_{1..404}	lnc-HOXC13-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOXC13-2:3	chr12	 54124825	 54125228	+	lnc-HOXC13-2	lnc-HOXC13-2:3	XLOC_009763	linc-HOXC13-2	CALCOCO1	NA	chr12:54114825-54121307	inter
CUST_17322_PI429285431	0.9415451	A	0.9549247	A	0.99076883918591	0	lncRNA	19040-1_{1..777}	lnc-PITRM1-7:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PITRM1-7:6	chr10	  2543876	  2544652	-	lnc-PITRM1-7	lnc-PITRM1-7:6	XLOC_008688	linc-ADARB2-5	NA	NA	NA	inter
CUST_49293_PI429285431	0.9268455	A	0.9243964	A	1.00169902847601	0	lncRNA	53110-1_{1..306}	hg19_lincRNAsTranscripts_TCONS_l2_00022763 range=chr5:4968060-4974687 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022763 range=chr5:4968060-4974687 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	  4968060	  4968365	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22562_PI429285431	1.2508183	A	1.2211133	A	1.02080337210623	0	lncRNA	24149-1_{1..553}	lnc-FAM98B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM98B-2:1	chr15	 38826785	 38827337	+	lnc-FAM98B-2	lnc-FAM98B-2:1	ENSG00000259598.1	RP11-275I4.1	RASGRP1	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90chr15:38816785-38836856"	NA	inner
CUST_19100_PI429285431	8.996453	P	6.901478	P	4.27218760018022	0	lncRNA	20789-1_{1..2375}	lnc-FANK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,"	>lnc-FANK1-1:1	NA	NA	     2374	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51382_PI429285431	11.558136	P	12.278377	P	0.606996035968464	0	lncRNA	54974-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00009371 range=chr15:101087837-101099853 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009371 range=chr15:101087837-101099853 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	101093837	101096836	-	NA	NA	NA	NA	CERS3	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60chr15:101077837-101084925"	NA	inter
CUST_13944_PI429285431	0.9131662	A	0.90625614	A	1.00480117750039	0	lncRNA	15591-1_{1..706}	lnc-CALN1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CALN1-1:6	chr7	 69061742	 69062447	-	lnc-CALN1-1	lnc-CALN1-1:6	XLOC_006493	linc-SBDS-8	AUTS2	NA	chr7:69063905-69071918	inter
CUST_16742_PI429285431	2.2633142	A	3.180182	P	0.529657699802288	0	lncRNA	18449-1_{1..470}	lnc-RBMY1J-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RBMY1J-1:2	chrY	 24587492	 24587961	+	lnc-RBMY1J-1	lnc-RBMY1J-1:2	XLOC_008300	linc-PRY	NA	NA	NA	inter
CUST_8288_PI429285431	0.92670804	A	0.91441065	A	1.008560333093	0	lncRNA	9873-1_{1..2602}	lnc-SHANK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHANK2-1:1	chr11	 70244204	 70246805	-	lnc-SHANK2-1	lnc-SHANK2-1:1	ENSG00000246889	ENSG00000246889.2	CTTN	"hg19_refFlat_PPFIA1:range=chr11:70118279-702282525'pad=0,hg19_refFlat_PPFIA1:range=chr11:70118279-702282525'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PPFIA1:range=chr11:70118279-702243095'pad=0,hg19_refFlat_PPFIA1:range=chr11:70118279-702243095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30chr11:70244612-70254594"	NA	inter
CUST_36786_PI429285431	0.9024037	A	0.8972964	A	1.00354638418767	0	lncRNA	37958-1_{1..504}	n345265|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_814|NULL|-1.2932400|-0.3143066	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345265|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_814|NULL|-1.2932400|-0.3143066	chr14	 66213365	 66213868	-	NA	NA	NA	NA	FUT8	NA	chr14:66203365-66210839	inter
CUST_46842_PI429285431	7.0869427	P	7.412939	P	0.797747285744652	0	lncRNA	50979-1_{1..937}	"gi|387849321|ref|NR_049730.1| Homo sapiens ASB16 antisense RNA 1 (ASB16-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387849321|ref|NR_049730.1| Homo sapiens ASB16 antisense RNA 1 (ASB16-AS1), transcript variant 2, non-coding RNA"	Chr17	 42253341	 42254277	-	339201	NR_049730.1	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10"	NA	inter
CUST_47853_PI429285431	5.6001244	P	5.789299	P	0.877107391704779	0	lncRNA	51758-1_{1..1152}	"gi|410171061|ref|XR_172500.1| PREDICTED: Homo sapiens killer cell immunoglobulin-like receptor 3DS1-like (LOC101060228), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410171061|ref|XR_172500.1| PREDICTED: Homo sapiens killer cell immunoglobulin-like receptor 3DS1-like (LOC101060228), misc_RNA"	NA	NA	NA	NA	NA	XR_172500.1	NA	NA	NA	NA	NA	Unknown
CUST_46631_PI429285431	3.2155502	P	0.9144771	A	4.92824199684087	0	lncRNA	50807-1_{1..3000}	"gi|388240760|ref|NR_049749.1| Homo sapiens zinc finger protein 267 (ZNF267), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388240760|ref|NR_049749.1| Homo sapiens zinc finger protein 267 (ZNF267), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_049749.1	NA	NA	NA	NA	NA	Unknown
CUST_11617_PI429285431	0.91990584	A	0.90584695	A	1.00979251591788	0	lncRNA	13197-1_{1..1694}	lnc-H3F3C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-H3F3C-1:1	chr12	 31931957	 31933650	-	lnc-H3F3C-1	lnc-H3F3C-1:1	XLOC_010043	linc-AMN1	H3F3C	NA	chr12:31921957-31942287	inter
CUST_20637_PI429285431	2.9890246	A	2.8497744	A	1.10133258060726	0	lncRNA	22276-1_{1..670}	lnc-CNN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CNN3-1:1	chr1	 95320800	 95321469	-	lnc-CNN3-1	lnc-CNN3-1:1	ENSG00000237416.2	RP11-465K1.2	SLC44A3	NA	chr1:95310800-95330982	inner
CUST_5072_PI429285431	5.14457	P	5.476149	P	0.794666261769895	0	lncRNA	5012-1_{1..357}	"transcript_id ""ENST00000412518.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412518.1"" | genecode_v17"	chr14	106064224	106064580	-	ENSG00000227468.4	ENST00000412518.1	AL928742.12	AL928742.12-003	NA	NA	NA	inter
LNCA_21_P0014751	7.954112	P	8.192311	P	0.847803013765985	0	lncRNA	XR_132487	XR_132487	XR_132487	NA	NA	LOC100652785	uncharacterized LOC100652785	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652785 (LOC100652785), miscRNA [XR_132487]"	chr2:12857317-12857258	hs|2p24.3	Agilent_HUMAN_G3V2	XR_132487	XR_132487	chr2	 12857258	 12857317	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24357_PI429285431	1.5705752	A	0.90786755	A	1.58305090730317	0	lncRNA	25910-1_{1..553}	lnc-FEV-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FEV-1:1	chr2	219826581	219827133	-	lnc-FEV-1	lnc-FEV-1:1	ENSG00000235024.1	AC097468.7	CDK5R2	NA	chr2:219818123-219826877	inner
CUST_2503_PI429285431	0.9020998	A	1.0545738	A	0.899706281142851	0	lncRNA	2495-1_{1..1176}	"transcript_id ""ENST00000422944.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422944.1"" | genecode_v17"	chr6	 30749735	 30750910	+	ENSG00000228022.1	ENST00000422944.1	HCG20	HCG20-002	NA	"hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80"	NA	inter
CUST_18946_PI429285431	1.7417768	A	2.3893328	A	0.638360814417958	0	lncRNA	20637-1_{1..719}	lnc-OSTF1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OSTF1-2:1	chr9	 77610914	 77611632	+	lnc-OSTF1-2	lnc-OSTF1-2:1	ENSG00000203321	RP11-197P3.4	C9orf41	NA	chr9:77600914-77621209	inner
CUST_42432_PI429285431	2.3322089	A	2.4132318	A	0.945387110435454	0	lncRNA	45153-1_{1..135}	ENST00000517204 ncrna:snoRNA chromosome:GRCh37:4:187051175:187051309:1 gene:ENSG00000253013 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517204 ncrna:snoRNA chromosome:GRCh37:4:187051175:187051309:1 gene:ENSG00000253013 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	187051175	187051309	+	ENSG00000253013	ENST00000517204	NA	NA	NA	NA	NA	inter
CUST_16648_PI429285431	1.771233	A	0.8937035	A	1.83722650237744	0	lncRNA	18350-1_{1..281}	lnc-GPR27-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR27-1:3	chr3	 71837855	 71838135	+	lnc-GPR27-1	lnc-GPR27-1:3	XLOC_002701	linc-GXYLT2-3	PROK2	NA	chr3:71827855-71834357	inter
CUST_49923_PI429285431	1.8313794	A	2.488174	A	0.634285998074202	0	lncRNA	53673-1_{1..1549}	hg19_lincRNAsTranscripts_TCONS_l2_00026784 range=chr7:97599990-97601648 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026784 range=chr7:97599990-97601648 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 97599990	 97601538	-	NA	NA	NA	NA	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40"	NA	inter
CUST_1820_PI429285431	3.4114077	P	3.2253394	P	1.13765908559994	0	lncRNA	1807-1_{1..686}	"transcript_id ""ENST00000603357.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603357.1"" | genecode_v17"	chr4	 90032651	 90033336	+	ENSG00000271359.1	ENST00000603357.1	RP11-84C13.1	RP11-84C13.1-001	TIGD2	NA	chr4:90033968-90036052	inter
CUST_31111_PI429285431	4.651081	P	4.755041	P	0.930475455602924	0	lncRNA	32904-1_{1..373}	n337400|DQ656056|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393169|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393169|0.5496160|-0.2712664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337400|DQ656056|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393169|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393169|0.5496160|-0.2712664	chr9	131703757	131704129	+	NA	NA	NA	NA	NUP188	NA	chr9:131709977-131729300	inner
LNCA_21_P0007148	0.9252792	A	0.9095746	A	1.01094506291707	0	lncRNA	ENST00000439104	NA	NA	NA	NA	XLOC_009286	NA	ENST00000439104	NA	NA	"BROAD Institute lincRNA (XLOC_009286), lincRNA [TCONS_00019155]"	chr11:116644715-116644774	hs|11q23.3	Agilent_HUMAN_G3V2	ENST00000439104	ENST00000439104	chr11	116644715	116644774	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33411_PI429285431	0.905557	A	0.897364	A	1.00569511068269	0	lncRNA	34990-1_{1..1314}	n340136|CR604602|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2595|NULL|-0.9672640|-0.2367208	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340136|CR604602|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2595|NULL|-0.9672640|-0.2367208	chr10	105342117	105343430	+	NA	NA	NA	NA	NEURL	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60chr10:105332117-105352309"	NA	inner
CUST_44748_PI429285431	0.9184957	A	0.9206255	A	0.998524824277799	0	lncRNA	49296-1_{1..2146}	"gi|336020377|ref|NR_038401.1| Homo sapiens uncharacterized LOC100131047 (LOC100131047), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336020377|ref|NR_038401.1| Homo sapiens uncharacterized LOC100131047 (LOC100131047), non-coding RNA"	Chr6	 38874271	 38876416	-	100131047	NR_038401.1	NA	NA	NA	"hg19_refFlat_DNAH8:range=chr6:38690586-389981685'pad=0,hg19_refFlat_DNAH8:range=chr6:38690586-389981685'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90"	NA	inter
CUST_35719_PI429285431	0.9248142	A	0.91955125	A	1.0036546610007	0	lncRNA	37137-2_{3001..4402}	n342884|BC047234|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5390|NULL|-1.0405800|-0.3172943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342884|BC047234|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5390|NULL|-1.0405800|-0.3172943	chr12	  9523059	  9524460	+	NA	NA	NA	NA	LOC728715	NA	chr12:9549658-9555094	inter
CUST_41524_PI429285431	0.91483295	A	0.9048003	A	1.00697833898286	0	lncRNA	42767-1_{1..81}	ENST00000583126 ncrna:miRNA chromosome:GRCh37:9:130631694:130631774:-1 gene:ENSG00000263979 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583126 ncrna:miRNA chromosome:GRCh37:9:130631694:130631774:-1 gene:ENSG00000263979 gene_biotype:miRNA transcript_biotype:miRNA	chr9	130631694	130631774	-	ENSG00000263979	ENST00000583126	NA	NA	AK1	NA	chr9:130628759-130640022	inner
CUST_9691_PI429285431	0.8912573	A	0.896536	A	0.996347769654611	0	lncRNA	11206-3_{6001..7388}	lnc-KCNK10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNK10-1:1	chr14	 88632762	 88634149	-	lnc-KCNK10-1	lnc-KCNK10-1:1	XLOC_011100	linc-GALC-3	NA	NA	NA	inter
CUST_44740_PI429285431	3.175666	A	1.7043061	A	2.77283140572796	0	lncRNA	49292-1_{1..3000}	"gi|300795034|ref|NR_034069.1| Homo sapiens SRSF protein kinase 1 (SRPK1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300795034|ref|NR_034069.1| Homo sapiens SRSF protein kinase 1 (SRPK1), transcript variant 2, non-coding RNA"	Chr6	 35800811	 35803810	-	6732	NR_034069.1	NA	NA	NA	NA	NA	inter
CUST_45331_PI429285431	5.4043517	P	5.7606726	P	0.781154108011975	0	lncRNA	49771-1_{1..3000}	"gi|392306973|ref|NR_052015.1| Homo sapiens RUN and SH3 domain containing 2 (RUSC2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392306973|ref|NR_052015.1| Homo sapiens RUN and SH3 domain containing 2 (RUSC2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_052015.1	NA	NA	NA	NA	NA	Unknown
CUST_32612_PI429285431	5.436083	P	5.6667857	P	0.852219696157901	0	lncRNA	34271-1_{1..1854}	n339233|CR601020|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1665|NULL|1.1348900|-0.1983902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339233|CR601020|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1665|NULL|1.1348900|-0.1983902	chr3	  5018473	  5020326	-	NA	NA	NA	NA	BHLHE40	NA	chr3:5021097-5026866	inter
CUST_10999_PI429285431	1.2689695	A	1.0324168	A	1.17817406451395	0	lncRNA	12544-1_{1..1775}	lnc-FOXD4L6-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXD4L6-1:10	chr9	 69176914	 69178688	-	lnc-FOXD4L6-1	lnc-FOXD4L6-1:10	XLOC_007714	linc-FAM75A7-8	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80"	NA	inter
CUST_22797_PI429285431	1.2562561	A	1.1579498	A	1.07051595659442	0	lncRNA	24377-1_{1..738}	lnc-NT5DC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NT5DC3-1:1	chr12	104162585	104163322	-	lnc-NT5DC3-1	lnc-NT5DC3-1:1	ENSG00000257681.1	RP11-341G23.4	NT5DC3	"hg19_refFlat_STAB2:range=chr12:103981255-1041601145'pad=0,hg19_refFlat_STAB2:range=chr12:103981255-1041601145'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80chr12:104166081-104172636"	NA	inter
CUST_19179_PI429285431	1.2501814	A	1.9431711	A	0.618570655561032	0	lncRNA	20848-1_{1..160}	lnc-KIAA1598-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1598-1:1	chr10	118609602	118609761	-	lnc-KIAA1598-1	lnc-KIAA1598-1:1	ENSG00000225302.1	RP11-539I5.1	ENO4	NA	chr10:118609023-118619716	inner
CUST_35749_PI429285431	1.113637	A	0.89701253	A	1.16201159936392	0	lncRNA	37168-1_{1..1189}	n342925|BC040898|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5434|NULL|0.1428130|-0.1670828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n342925|BC040898|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5434|NULL|0.1428130|-0.1670828	chr6	150255662	150256850	+	NA	NA	NA	NA	ULBP2	NA	chr6:150263136-150267455	inter
LNCA_21_P0006319	0.92047906	A	0.90470594	A	1.01099307833179	0	lncRNA	TCONS_00016477	NA	NA	NA	NA	XLOC_007849	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007849), lincRNA [TCONS_00016477]"	chr9:126760960-126759373	hs|9q33.3	Agilent_HUMAN_G3V2	TCONS_00016477	TCONS_00016477	chr9	126759373	126760960	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32372_PI429285431	8.897272	P	9.122904	P	0.855220298094064	0	lncRNA	34049-1_{1..2141}	n338961|CR616808|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1389|NULL|-1.0107200|-0.2525182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338961|CR616808|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1389|NULL|-1.0107200|-0.2525182	chr19	 57417513	 57419653	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45017_PI429285431	10.849005	P	10.996739	P	0.902667143315628	0	lncRNA	49519-1_{1..2338}	"gi|298676522|ref|NR_033792.1| Homo sapiens TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa (TAF6), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298676522|ref|NR_033792.1| Homo sapiens TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa (TAF6), transcript variant 6, non-coding RNA"	Chr7	 99704693	 99707030	-	6878	NR_033792.1	NA	NA	NA	NA	NA	inter
CUST_34501_PI429285431	0.920158	A	0.9068789	A	1.00924686121161	0	lncRNA	35968-1_{1..3000}	n341379|BC039304|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3848|NULL|-1.1253100|-0.2138356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341379|BC039304|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3848|NULL|-1.1253100|-0.2138356	chr7	157258922	157261921	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37153_PI429285431	0.8976829	A	0.8946216	A	1.00212418435363	0	lncRNA	38271-1_{1..2052}	n345590|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1139|NULL|-1.5233000|-0.2866072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345590|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1139|NULL|-1.5233000|-0.2866072	chr3	 71666785	 71668836	-	NA	NA	NA	NA	NA	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.99;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30"	NA	inter
CUST_29918_PI429285431	5.741309	P	6.0465827	P	0.809288668282081	0	lncRNA	31682-1_{1..212}	n334057|M28590|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195249|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195249|0.5421470|-0.0392233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334057|M28590|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195249|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195249|0.5421470|-0.0392233	chr5	149782673	149782884	-	NA	NA	NA	NA	TCOF1	NA	chr5:149772673-149779871	inner
CUST_26763_PI429285431	2.7957425	A	2.9627094	A	0.890713336161238	0	lncRNA	28262-1_{1..2390}	n323814|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058088|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058088|-1.1832300|-0.2976042	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323814|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058088|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058088|-1.1832300|-0.2976042	chrX	119254332	119256721	-	NA	NA	NA	NA	RHOXF1	NA	chrX:119244332-119249847	inter
CUST_43787_PI429285431	4.7981415	P	4.8796487	P	0.945069805582425	0	lncRNA	48518-1_{1..2145}	"gi|335334955|ref|NR_038369.1| Homo sapiens long intergenic non-protein coding RNA 487 (LINC00487), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|335334955|ref|NR_038369.1| Homo sapiens long intergenic non-protein coding RNA 487 (LINC00487), non-coding RNA"	Chr2	  6869300	  6871444	-	400941	NR_038369.1	NA	NA	NA	NA	NA	inter
CUST_1827_PI429285431	0.9276742	A	0.9112555	A	1.0114455807286	0	lncRNA	1816-1_{1..417}	"transcript_id ""ENST00000510200.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510200.1"" | genecode_v17"	chr4	104346199	104346615	+	ENSG00000248740.1	ENST00000510200.1	RP11-328K4.1	RP11-328K4.1-001	NA	NA	NA	inter
CUST_22521_PI429285431	0.9154592	A	1.1077172	A	0.875234795733047	0	lncRNA	24108-1_{1..568}	lnc-AGGF1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGGF1-3:3	chr5	 76383312	 76383879	+	lnc-AGGF1-3	lnc-AGGF1-3:3	ENSG00000250802.2	CTC-564N23.3	ZBED3	NA	chr5:76373312-76383030	inter
CUST_40756_PI429285431	8.575967	P	8.902246	P	0.797590980318492	0	lncRNA	41482-1_{1..3000}	n410476|NR_037625|lncRNA|Homosapiens||RefGeneNoncode|NR_037625||11.0607000|-0.1548134	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410476|NR_037625|lncRNA|Homosapiens||RefGeneNoncode|NR_037625||11.0607000|-0.1548134	chr6	 32938664	 32941663	+	NA	NA	NA	NA	BRD2	NA	chr6:32936437-32949282	inner
CUST_44420_PI429285431	5.2954435	P	5.506462	P	0.863927108999411	0	lncRNA	49033-1_{1..1245}	"gi|410170483|ref|XR_171076.1| PREDICTED: Homo sapiens uncharacterized LOC101059947 (LOC101059947), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170483|ref|XR_171076.1| PREDICTED: Homo sapiens uncharacterized LOC101059947 (LOC101059947), misc_RNA"	NA	NA	NA	NA	NA	XR_171076.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009019	0.9188945	A	0.90408427	A	1.01031854191952	0	lncRNA	TCONS_00024610	NA	NA	NA	NA	XLOC_011899	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011899), lincRNA [TCONS_00024610]"	chr16:22824537-22824478	hs|16p12.2	Agilent_HUMAN_G3V2	TCONS_00024610	TCONS_00024610	chr16	 22824478	 22824537	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47263_PI429285431	0.93108386	A	0.9329211	A	0.998727332802647	0	lncRNA	51335-1_{1..2121}	"gi|223972619|ref|NR_026933.1| Homo sapiens chromosome 20 open reading frame 173 (C20orf173), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223972619|ref|NR_026933.1| Homo sapiens chromosome 20 open reading frame 173 (C20orf173), transcript variant 2, non-coding RNA"	Chr20	 34108569	 34110689	-	140873	NR_026933.1	NA	NA	NA	NA	NA	inter
CUST_50825_PI429285431	1.5058098	A	1.346334	A	1.11688124804629	0	lncRNA	54474-1_{1..734}	hg19_lincRNAsTranscripts_TCONS_l2_00004563 range=chr11:65222726-65234212 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004563 range=chr11:65222726-65234212 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65222726	 65223459	+	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-27.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40"	NA	inter
CUST_197_PI429201921	1.4611051	A	1.715914	A	0.838098142152848	0	lncRNA	158-2_{3001..5093}	TC09002522.hg.1	 TCONS_l2_00029288-XLOC_l2_015176 // Broad TUCP // linc-ANKRD20A2-4 chr9:-:43185431-43188152 // chr9 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00029287-XLOC_l2_015176 // Broad TUCP // linc-ANKRD20A2-4 chr9:-:43184316-43187301 // chr9 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00029289-XLOC_l2_015176 // Broad TUCP // linc-ANKRD20A2-4 chr9:-:43185439-43189410 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:-:43184316-43187301	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00029287-XLOC_l2_015176	linc-ANKRD20A2-4	chr9	 43184316	 43187301	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21969_PI429285431	6.8427873	P	6.5024595	P	1.26604422381615	0	lncRNA	23577-1_{1..906}	lnc-THAP10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THAP10-2:1	chr15	 71145686	 71146591	-	lnc-THAP10-2	lnc-THAP10-2:1	ENSG00000259510.1	RP11-138H8.5	THAP10	NA	chr15:71150976-71156145	inner
LNCA_21_P0007558	1.6710925	A	2.7443311	A	0.475250944776788	0	lncRNA	TCONS_00020424	NA	NA	NA	NA	XLOC_009752	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009752), lincRNA [TCONS_00020424]"	chr12:51568359-51568418	hs|12q13.13	Agilent_HUMAN_G3V2	TCONS_00020424	TCONS_00020424	chr12	 51568359	 51568418	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006161	0.91962314	A	1.6714362	A	0.593856778191953	0	lncRNA	TCONS_00016029	NA	NA	NA	NA	XLOC_007426	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007426), lincRNA [TCONS_00016029]"	chr9:86711603-86711662	hs|9q21.32	Agilent_HUMAN_G3V2	TCONS_00016029	TCONS_00016029	chr9	 86711603	 86711662	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29866_PI429285431	5.46698	P	6.0012455	P	0.690510137399748	0	lncRNA	31629-1_{1..268}	n333854|L29139|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192782|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192782|1.2627700|-0.1142014	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333854|L29139|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192782|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192782|1.2627700|-0.1142014	chr15	 59519712	 59519979	-	NA	NA	NA	NA	MYO1E	NA	chr15:59509712-59538886	inner
CUST_16045_PI429285431	0.9281141	A	1.1697615	A	0.845778973626086	0	lncRNA	17744-1_{1..348}	lnc-PHGDH-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHGDH-2:1	chr1	120389145	120389492	+	lnc-PHGDH-2	lnc-PHGDH-2:1	XLOC_000371	linc-FAM72B-3	NBPF7	NA	chr1:120379145-120387779	inter
CUST_40475_PI429285431	1.3476789	A	2.188022	A	0.558510728890775	0	lncRNA	41243-1_{1..3000}	n409408|NR_033807|lncRNA|Homosapiens||RefGeneNoncode|NR_033807||5.7123500|-0.2902576	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409408|NR_033807|lncRNA|Homosapiens||RefGeneNoncode|NR_033807||5.7123500|-0.2902576	chr7	 99245812	 99248811	-	NA	NA	NA	NA	CYP3A5	NA	chr7:99245813-99277621	inner
CUST_16900_PI429285431	7.6160192	P	7.77855	P	0.893456379151521	0	lncRNA	18609-1_{1..359}	lnc-EPHA6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EPHA6-1:1	chr3	 96336490	 96336848	+	lnc-EPHA6-1	lnc-EPHA6-1:1	XLOC_002730	linc-EPHA6-1	NA	"hg19_refFlat_MTRNR2L2:range=chr5:79945819-799459055'pad=0,hg19_refFlat_MTRNR2L2:range=chr5:79945819-799459055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MTRNR2L4:range=chr16:3421816-34219025'pad=0,hg19_refFlat_MTRNR2L4:range=chr16:3421816-34219025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_MTRNR2L1:range=chr17:22023388-220234625'pad=0,hg19_refFlat_MTRNR2L1:range=chr17:22023388-220234625'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MTRNR2L6:range=chr7:142375063-1423751375'pad=0,hg19_refFlat_MTRNR2L6:range=chr7:142375063-1423751375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MTRNR2L5:range=chr10:57359660-573597345'pad=0,hg19_refFlat_MTRNR2L5:range=chr10:57359660-573597345'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MTRNR2L8:range=chr11:10529699-105297735'pad=0,hg19_refFlat_MTRNR2L8:range=chr11:10529699-105297735'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MTRNR2L10:range=chrX:55208353-552084275'pad=0,hg19_refFlat_MTRNR2L10:range=chrX:55208353-552084275'pad=0 3'pad=0 strand=- repeatMasking=none,-62.60;hg19_refFlat_MTRNR2L3:range=chr20:55934021-559340955'pad=0,hg19_refFlat_MTRNR2L3:range=chr20:55934021-559340955'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40"	NA	inter
CUST_36185_PI429285431	0.91877013	A	0.9156146	A	1.00218964049172	0	lncRNA	37449-2_{3001..6000}	n344737|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_286|NULL|-1.3158900|-0.3715000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344737|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_286|NULL|-1.3158900|-0.3715000	chr13	 83136840	 83139839	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
CUST_71_PI429201921	4.4385605	P	4.4820676	P	0.970293356622716	0	lncRNA	73-1_{1..2056}	TC16001509.hg.1	TCONS_l2_00009683-XLOC_l2_005186 // Broad TUCP // linc-TP53TG3B-20 chr16:+:32769844-32771213 // chr16 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00009684-XLOC_l2_005186 // Broad TUCP // linc-TP53TG3B-20 chr16:+:32770032-32771901 // chr16 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr16:+:32769844-32771213	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00009683-XLOC_l2_005186	linc-TP53TG3B-20	chr16	 32769844	 32771213	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10040_PI429285431	6.723934	P	6.713243	P	1.00743796174131	0	lncRNA	11568-1_{1..264}	lnc-RPP30-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPP30-1:1	chr10	 92621370	 92621633	+	lnc-RPP30-1	lnc-RPP30-1:1	XLOC_008558	linc-RPP30-1	HTR7	NA	chr10:92611370-92617671	inter
CUST_26993_PI429285431	0.91425467	A	0.9117184	A	1.00175955460235	0	lncRNA	28520-1_{1..579}	n324093|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000037009|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000037009|-0.7591280|-0.1955159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324093|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000037009|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000037009|-0.7591280|-0.1955159	chr9	 45048416	 45048994	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35380_PI429285431	9.211363	P	8.911638	P	1.23090976053314	0	lncRNA	36788-1_{1..992}	n342428|CR596520|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4921|NULL|-1.0098800|-0.3093850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342428|CR596520|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4921|NULL|-1.0098800|-0.3093850	chr2	 91934346	 91935337	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_903_PI429285431	1.1382791	A	0.93033427	A	1.15504161384358	0	lncRNA	892-1_{1..1099}	"transcript_id ""ENST00000600508.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600508.1"" | genecode_v17"	chr2	 65669189	 65670287	-	ENSG00000234255.4	ENST00000600508.1	AC012370.3	AC012370.3-006	SPRED2	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr2:65659189-65659656"	NA	inter
CUST_15130_PI429285431	1.7757165	A	2.0574288	A	0.822614096779876	0	lncRNA	16790-1_{1..455}	lnc-AKR1E2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AKR1E2-3:1	chr10	  4396782	  4397236	+	lnc-AKR1E2-3	lnc-AKR1E2-3:1	XLOC_008360	linc-AKR1E2-3	NA	NA	NA	inter
CUST_13717_PI429285431	5.7852693	P	5.974054	P	0.877344469104014	0	lncRNA	15356-1_{1..361}	lnc-TXLNB-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TXLNB-2:2	chr6	139617679	139618039	-	lnc-TXLNB-2	lnc-TXLNB-2:2	XLOC_005854	linc-TXLNB-1	TXLNB	NA	chr6:139607679-139613208	inter
CUST_17170_PI429285431	3.0563054	A	3.369838	A	0.804669022966779	0	lncRNA	18880-1_{1..1075}	lnc-WRNIP1-2:19	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRNIP1-2:19	chr6	  2329517	  2330591	+	lnc-WRNIP1-2	lnc-WRNIP1-2:19	XLOC_005126	linc-WRNIP1-3	NA	NA	NA	inter
CUST_20164_PI429285431	0.90191704	A	0.8974484	A	1.00310222719507	0	lncRNA	21809-1_{1..547}	lnc-FAM153C-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FAM153C-5:1	chr5	177409654	177410200	+	lnc-FAM153C-5	lnc-FAM153C-5:1	ENSG00000250101.1	RP11-1252I4.2	PROP1	NA	chr5:177419236-177420055	inter
CUST_1770_PI429285431	9.481435	P	9.200483	P	1.21499636700983	0	lncRNA	1756-1_{1..554}	"transcript_id ""ENST00000504250.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504250.1"" | genecode_v17"	chr4	 56686169	 56686722	+	ENSG00000250821.1	ENST00000504250.1	RP11-345F18.1	RP11-345F18.1-001	NA	NA	NA	inter
CUST_5827_PI429285431	4.4907274	P	4.8198686	P	0.796010187553095	0	lncRNA	5756-1_{1..3000}	"transcript_id ""ENST00000587132.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587132.1"" | genecode_v17"	chr17	 34220711	 34223710	-	ENSG00000266999.1	ENST00000587132.1	AC015849.16	AC015849.16-001	RDM1	NA	chr17:34245084-34248027	inter
CUST_16812_PI429285431	2.4502614	A	3.3632774	P	0.531073703419183	0	lncRNA	18519-1_{1..2016}	lnc-DMRT2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRT2-1:2	chr9	  1047151	  1049166	+	lnc-DMRT2-1	lnc-DMRT2-1:2	XLOC_007262	linc-DMRT2	DMRT2	NA	chr9:1050346-1057554	inter
CUST_42918_PI429285431	10.972335	P	10.82703	P	1.10596444042772	0	lncRNA	46022-1_{1..134}	ENST00000363484 ncrna:snoRNA chromosome:GRCh37:20:37062508:37062641:-1 gene:ENSG00000200354 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363484 ncrna:snoRNA chromosome:GRCh37:20:37062508:37062641:-1 gene:ENSG00000200354 gene_biotype:snoRNA transcript_biotype:snoRNA	chr20	 37062508	 37062641	-	ENSG00000200354	ENST00000363484	NA	NA	NA	NA	NA	inter
CUST_45909_PI429285431	1.1978024	A	1.1806709	A	1.01194543449029	0	lncRNA	50219-1_{1..572}	"gi|377823726|ref|NR_046369.1| Homo sapiens uncharacterized LOC100131626 (LOC100131626), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|377823726|ref|NR_046369.1| Homo sapiens uncharacterized LOC100131626 (LOC100131626), transcript variant 1, non-coding RNA"	NW_003871072.2	     6658	     7229	-	100131626	NR_046369.1	NA	NA	NA	"hg19_refFlat_UBE4A:range=chr11:118235796-1182671555'pad=0,hg19_refFlat_UBE4A:range=chr11:118235796-1182671555'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90"	NA	Unknown
CUST_50384_PI429285431	0.89923483	A	0.9029494	A	0.997428568087162	0	lncRNA	54092-2_{3001..4752}	hg19_lincRNAsTranscripts_TCONS_l2_00030613 range=chrX:135886490-135930734 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030613 range=chrX:135886490-135930734 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	135889490	135891241	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RAB28:range=chr4:13371500-134857745'pad=0,hg19_refFlat_RAB28:range=chr4:13371500-134857745'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_RAB28:range=chr4:13373450-134857745'pad=0,hg19_refFlat_RAB28:range=chr4:13373450-134857745'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_RAB28:range=chr4:13370182-134857745'pad=0,hg19_refFlat_RAB28:range=chr4:13370182-134857745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10"	NA	inter
CUST_8659_PI429285431	0.90319127	A	0.9009775	A	1.001535646333	0	lncRNA	10210-1_{1..1321}	lnc-AP4B1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AP4B1-1:4	chr1	114470866	114472186	-	lnc-AP4B1-1	lnc-AP4B1-1:4	ENSG00000235527	RP5-1073O3.7	HIPK1	NA	chr1:114471996-114481854	inter
CUST_23526_PI429285431	0.9324758	A	0.9295029	A	1.00206278186636	0	lncRNA	25093-1_{1..456}	lnc-GPR65-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR65-3:2	chr14	 88646242	 88646697	+	lnc-GPR65-3	lnc-GPR65-3:2	ENSG00000258538.1	RP11-753D20.3	KCNK10	NA	chr14:88646452-88656542	inner
CUST_12229_PI429285431	3.9812121	P	5.4374633	P	0.364438883601521	0	lncRNA	13835-1_{1..423}	lnc-C13orf33-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C13orf33-1:1	chr13	 31457231	 31457653	+	lnc-C13orf33-1	lnc-C13orf33-1:1	XLOC_010338	linc-C13orf33-1	NA	NA	NA	inter
CUST_25332_PI429285431	4.463553	P	4.784076	P	0.800779529592631	0	lncRNA	26864-1_{1..3000}	lnc-ARMCX5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ARMCX5-1:1	chrX	101826349	101829348	+	lnc-ARMCX5-1	lnc-ARMCX5-1:1	ENSG00000196970.3	NXF4	NA	NA	NA	inter
CUST_9495_PI429285431	0.97348964	A	0.9250456	A	1.03414898289095	0	lncRNA	11002-1_{1..408}	lnc-CD2AP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD2AP-1:1	chr6	 47415163	 47415570	+	lnc-CD2AP-1	lnc-CD2AP-1:1	XLOC_005310	linc-CD2AP-1	NA	NA	NA	inter
CUST_40421_PI429285431	6.4366274	P	6.639051	P	0.869089343091548	0	lncRNA	41206-1_{1..1895}	n409287|NR_033489_7|lncRNA|Homosapiens||RefGeneNoncode|NR_033489_7||-0.3483780|-0.3604972	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409287|NR_033489_7|lncRNA|Homosapiens||RefGeneNoncode|NR_033489_7||-0.3483780|-0.3604972	chr6	  3164344	  3166238	-	NA	NA	NA	NA	TUBB2A	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40chr6:3154344-3157783"	NA	inter
CUST_2408_PI429285431	1.0055999	A	1.4164971	A	0.75215546902162	0	lncRNA	2400-1_{1..346}	"transcript_id ""ENST00000523820.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523820.1"" | genecode_v17"	chr5	157702719	157703064	+	ENSG00000253134.1	ENST00000523820.1	CTC-436K13.2	CTC-436K13.2-001	NA	NA	NA	inter
LNCA_21_P0013551	1.0045259	A	0.9320878	A	1.0514921649026	0	lncRNA	TCONS_l2_00028610	NA	NA	NA	NA	XLOC_l2_014697	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014697), lincRNA [TCONS_l2_00028610]"	chr9:6669819-6669878	hs|9p24.1	Agilent_HUMAN_G3V2	TCONS_l2_00028610	TCONS_l2_00028610	chr9	  6669819	  6669878	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39187_PI429285431	0.9161227	A	1.3045319	A	0.763971539950205	0	lncRNA	40162-1_{1..1282}	n385936|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vyn.1||3.9063900|-0.3015834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385936|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vyn.1||3.9063900|-0.3015834	chr1	 47333618	 47334899	-	NA	NA	NA	NA	CYP4A11	NA	chr1:47357206-47376147	inter
LNCA_21_P0013873	3.3442428	P	3.292748	P	1.03633813470269	0	lncRNA	ENST00000427671	NA	NA	NA	NA	XLOC_l2_015842	NA	ENST00000427671	THC2735090	NA	"BROAD Institute lincRNA (XLOC_l2_015842), lincRNA [TCONS_l2_00030871]"	chrX:149007698-149007639	hs|Xq28	Agilent_HUMAN_G3V2	ENST00000427671	ENST00000427671	chrX	149007639	149007698	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39333_PI429285431	0.9291479	A	1.4844424	A	0.680518128649305	0	lncRNA	40300-1_{1..2597}	n386392|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010iyu.1||0.3264070|-0.4040939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n386392|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010iyu.1||0.3264070|-0.4040939	chr5	 70647681	 70650277	-	NA	NA	NA	NA	BDP1	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10chr5:70751442-70752163"	NA	inter
CUST_28_PI429201921	0.9198482	A	0.99446994	A	0.949591061454612	0	lncRNA	29-1_{1..1017}	TC03002540.hg.1	TCONS_l2_00018853-XLOC_l2_009884 // Broad TUCP // linc-COL6A5-4 chr3:+:129831700-129832718 // chr3 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr3:+:129831700-129832718	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00018853-XLOC_l2_009884	linc-COL6A5-4	chr3	129831700	129832718	+	NA	NA	NA	NA	OXR1	NA	chr8:107267663-107290969	Unknown
CUST_39439_PI429285431	6.091786	P	6.006535	P	1.0608722958142	0	lncRNA	40387-1_{1..1208}	n386747|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tqj.1||4.0113100|-0.1956520	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386747|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tqj.1||4.0113100|-0.1956520	chr14	 50467799	 50469006	-	NA	NA	NA	NA	C14orf182	NA	chr14:50457799-50474238	inner
CUST_36669_PI429285431	1.4434423	A	1.0708914	A	1.29463992455301	0	lncRNA	37856-2_{3001..6000}	n345161|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_710|NULL|-1.3467000|-0.3548475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345161|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_710|NULL|-1.3467000|-0.3548475	chr12	 57748328	 57751327	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.34;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-18.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10"	NA	inter
CUST_23708_PI429285431	5.5230803	P	5.8290515	P	0.808897495929102	0	lncRNA	25273-1_{1..389}	lnc-TCTN3-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCTN3-1:9	chr10	 97667535	 97667923	-	lnc-TCTN3-1	lnc-TCTN3-1:9	ENSG00000226688.1	RP11-429G19.2	C10orf131	NA	chr10:97667722-97677640	inter
CUST_13736_PI429285431	3.9054031	P	4.384499	P	0.717427076321248	0	lncRNA	15379-1_{1..203}	lnc-FRMD4A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRMD4A-1:2	chr10	 13570473	 13570675	-	lnc-FRMD4A-1	lnc-FRMD4A-1:2	XLOC_008735	linc-BEND7-1	NA	NA	NA	inter
CUST_23435_PI429285431	6.6766376	P	6.6354685	P	1.02894730496202	0	lncRNA	25003-1_{1..1007}	lnc-AL353698.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AL353698.1-2:1	chrX	 56041278	 56042284	+	lnc-AL353698.1-2	lnc-AL353698.1-2:1	ENSG00000227486.1	RP13-188A5.1	NA	NA	NA	inter
CUST_34840_PI429285431	0.9141805	A	0.91431093	A	0.999909596899846	0	lncRNA	36268-2_{3001..3757}	n341744|BC035187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4217|NULL|0.2800410|-0.3604748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341744|BC035187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4217|NULL|0.2800410|-0.3604748	chr9	105905804	105906560	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50"	NA	inter
CUST_21324_PI429285431	0.9865417	A	0.9106461	A	1.05401514718261	0	lncRNA	22947-1_{1..447}	lnc-DDX60-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DDX60-1:1	chr4	169034380	169034826	-	lnc-DDX60-1	lnc-DDX60-1:1	ENSG00000248601.1	RP11-310I9.1	ANXA10	NA	chr4:169024380-169044482	inner
CUST_11861_PI429285431	2.7623456	A	1.6147609	A	2.21542686223797	0	lncRNA	13440-1_{1..819}	lnc-FGF20-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGF20-2:1	chr8	 16230770	 16231588	-	lnc-FGF20-2	lnc-FGF20-2:1	XLOC_007012	linc-MSR1-1	NA	NA	NA	inter
CUST_52220_PI429285431	0.999867	A	0.9268143	A	1.05194020467474	0	lncRNA	55733-1_{1..2203}	hg19_lincRNAsTranscripts_TCONS_00030021 range=chrUn_gl000211:21807-48108 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00030021 range=chrUn_gl000211:21807-48108 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrUn_gl000211	    21807	    24009	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50"	NA	Unknown
LNCA_21_P0002386	0.9139162	A	0.91626483	A	0.998373378123065	0	lncRNA	TCONS_00004109	NA	NA	NA	NA	XLOC_001958	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001958), lincRNA [TCONS_00004109]"	chr2:5816848-5816789	hs|2p25.2	Agilent_HUMAN_G3V2	TCONS_00004109	TCONS_00004109	chr2	  5816789	  5816848	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38272_PI429285431	5.0214443	P	6.2258244	P	0.433955766476301	0	lncRNA	39327-1_{1..2740}	n381846|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001rbb.3||-0.1942030|-0.2081681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n381846|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001rbb.3||-0.1942030|-0.2081681	chr12	 13068125	 13070864	+	NA	NA	NA	NA	GPRC5A	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr12:13058125-13066600"	NA	inter
CUST_51367_PI429285431	4.8999743	P	5.2349114	P	0.792818701925789	0	lncRNA	54963-1_{1..324}	hg19_lincRNAsTranscripts_TCONS_l2_00008798 range=chr15:85115449-85133471 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008798 range=chr15:85115449-85133471 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 85115449	 85115772	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33578_PI429285431	0.90712464	A	0.90017676	A	1.00482751853406	0	lncRNA	35143-1_{1..291}	n340330|AF009294|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2791|NULL|-1.3667000|-0.4020990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340330|AF009294|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2791|NULL|-1.3667000|-0.4020990	chr5	  9168274	  9168564	+	NA	NA	NA	NA	SEMA5A	NA	chr5:9158274-9178565	inner
CUST_26246_PI429285431	1.0239338	A	1.1157674	A	0.938329416884353	0	lncRNA	27753-1_{1..349}	lnc-SLC25A16-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A16-2:1	chr10	 70452666	 70453014	-	lnc-SLC25A16-2	lnc-SLC25A16-2:1	ENSG00000228088.1	RP11-119F7.4	TET1	"hg19_refFlat_TET1:range=chr10:70332096-704515715'pad=0,hg19_refFlat_TET1:range=chr10:70332096-704515715'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00chr10:70442666-70454239"	NA	inner
CUST_1974_PI429285431	0.9199692	A	0.9024047	A	1.01224919801773	0	lncRNA	1965-1_{1..404}	"transcript_id ""ENST00000399152.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000399152.2"" | genecode_v17"	chr4	172474151	172474554	-	ENSG00000251176.1	ENST00000399152.2	RP11-97E7.1	RP11-97E7.1-001	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60"	NA	inter
CUST_45808_PI429285431	1.0862734	A	0.90302837	A	1.13543493014371	0	lncRNA	50146-2_{3001..3573}	"gi|387849363|ref|NR_049734.1| Homo sapiens membrane-spanning 4-domains, subfamily A, member 14 (MS4A14), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387849363|ref|NR_049734.1| Homo sapiens membrane-spanning 4-domains, subfamily A, member 14 (MS4A14), transcript variant 8, non-coding RNA"	Chr11	 60166487	 60167059	+	84689	NR_049734.1	NA	NA	NA	NA	NA	inter
CUST_10119_PI429285431	0.9215888	A	1.0785493	A	0.8969127161804	0	lncRNA	11644-1_{1..558}	lnc-UBXN4-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBXN4-2:6	chr2	136774028	136774585	+	lnc-UBXN4-2	lnc-UBXN4-2:6	XLOC_001682	linc-THSD7B-4	NA	NA	NA	inter
CUST_28559_PI429285431	0.9131475	A	0.9205928	A	0.994852604772862	0	lncRNA	30236-1_{1..784}	n325913|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049338|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049338|-0.9003820|-0.3329336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325913|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049338|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049338|-0.9003820|-0.3329336	chr10	 92204434	 92205217	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35408_PI429285431	12.050854	P	12.322986	P	0.82809489097194	0	lncRNA	36819-1_{1..1644}	n342469|S75463|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4963|NULL|9.6242700|-0.1585066	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342469|S75463|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4963|NULL|9.6242700|-0.1585066	chr16	 28854107	 28855750	-	NA	NA	NA	NA	ATXN2L	NA	chr16:28844107-28848558	inter
CUST_34998_PI429285431	1.0706596	A	0.91253513	A	1.11583558803638	0	lncRNA	36411-1_{1..2347}	n341924|BC073920|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4405|NULL|-1.0085200|-0.2773458	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341924|BC073920|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4405|NULL|-1.0085200|-0.2773458	chr12	 53907767	 53910113	+	NA	NA	NA	NA	ATF7	"hg19_refFlat_ATF7:range=chr12:53910921-539947845'pad=0,hg19_refFlat_ATF7:range=chr12:53910921-539947845'pad=0 3'pad=0 strand=- repeatMasking=none,-92.90chr12:53905843-53921392"	NA	inner
CUST_47763_PI429285431	1.9307399	A	1.650246	A	1.21461062957945	0	lncRNA	51699-3_{6001..6421}	"gi|385137100|ref|NR_047638.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 68, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137100|ref|NR_047638.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 68, non-coding RNA"	ChrY	 15366259	 15366679	-	7404	NR_047638.1	NA	NA	NA	NA	NA	inter
CUST_40768_PI429285431	2.1285806	A	2.833805	A	0.61334707983613	0	lncRNA	41489-1_{1..622}	n410487|NR_037629|lncRNA|Homosapiens||RefGeneNoncode|NR_037629||1.8210700|-0.1860084	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410487|NR_037629|lncRNA|Homosapiens||RefGeneNoncode|NR_037629||1.8210700|-0.1860084	chr12	108296926	108297547	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5899_PI429285431	1.5058897	A	1.6391212	A	0.911786845206185	0	lncRNA	5830-1_{1..2645}	"transcript_id ""ENST00000441895.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000441895.2"" | genecode_v17"	chr17	 49414076	 49416720	+	ENSG00000225860.2	ENST00000441895.2	RP11-1018N14.2	RP11-1018N14.2-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90"	NA	inter
CUST_5254_PI429285431	7.9754734	P	7.827674	P	1.10787829185828	0	lncRNA	5194-1_{1..612}	"transcript_id ""ENST00000560533.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560533.1"" | genecode_v17"	chr15	 79505439	 79506050	-	ENSG00000259234.1	ENST00000560533.1	RP11-17L5.4	RP11-17L5.4-007	ANKRD34C	NA	chr15:79575146-79586197	inter
CUST_8263_PI429285431	2.7739248	A	3.1641126	P	0.763030272044705	0	lncRNA	9851-1_{1..777}	lnc-ENDOD1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ENDOD1-1:5	chr11	 94966618	 94967394	+	lnc-ENDOD1-1	lnc-ENDOD1-1:5	ENSG00000245552	RP11-712B9.2	SESN3	NA	chr11:94956618-94964246	inter
CUST_33625_PI429285431	2.974741	A	2.8871303	A	1.06260889894798	0	lncRNA	35190-1_{1..349}	n340385|U52832|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2846|NULL|-0.9815330|-0.1734894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340385|U52832|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2846|NULL|-0.9815330|-0.1734894	chr5	 10581868	 10582216	-	NA	NA	NA	NA	ANKRD33B	NA	chr5:10571868-10592216	inner
CUST_22409_PI429285431	0.91704553	A	0.9261796	A	0.993688745295592	0	lncRNA	23998-1_{1..588}	lnc-C12orf42-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C12orf42-2:2	chr12	103572110	103572697	-	lnc-C12orf42-2	lnc-C12orf42-2:2	ENSG00000257703.1	RP11-328J6.1	NA	NA	NA	inter
LNCA_21_P0011573	10.637099	P	10.188672	P	1.36455164671661	0	lncRNA	TCONS_l2_00011128	NA	NA	NA	NA	XLOC_l2_006013	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006013), lincRNA [TCONS_l2_00011128]"	chr17:19364076-19364017	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00011128	TCONS_l2_00011128	chr17	 19364017	 19364076	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2778_PI429285431	0.91951305	A	0.9085808	A	1.00760644137399	0	lncRNA	2761-1_{1..376}	"transcript_id ""ENST00000453564.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453564.1"" | genecode_v17"	chr7	 20337917	 20338292	+	ENSG00000226097.1	ENST00000453564.1	AC099342.1	AC099342.1-003	NA	NA	NA	inter
CUST_48787_PI429285431	6.935308	P	7.0234547	P	0.940730444765196	0	lncRNA	52624-1_{1..686}	hg19_lincRNAsTranscripts_TCONS_l2_00015101 range=chr2:216476319-216477172 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015101 range=chr2:216476319-216477172 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	216476319	216477004	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26128_PI429285431	1.1792909	A	0.8990389	A	1.2144069900908	0	lncRNA	27639-1_{1..908}	lnc-ADI1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADI1-1:1	chr2	  3485917	  3486824	-	lnc-ADI1-1	lnc-ADI1-1:1	ENSG00000225234.1	TRAPPC12-AS1	TTC15	NA	chr2:3475917-3483342	inter
LNCA_23_P166508	8.598153	P	8.993765	P	0.760166840823006	0	lncRNA	ENST00000424852	XR_109724	XR_109724	NA	Hs.335413	NA	NA	ENST00000424852	THC2605722	NA	"PREDICTED: Homo sapiens hypothetical LOC100134361, transcript variant 2 (LOC100134361), miscRNA [XR_109724]"	chr22:42760626-42760567	hs|22q13.2	Agilent_HUMAN_G3V2	ENST00000424852	ENST00000424852	chr22	 42760567	 42760626	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14482_PI429285431	0.9127676	A	0.90128887	A	1.00798818599346	0	lncRNA	16147-1_{1..1324}	lnc-PITRM1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PITRM1-2:1	chr10	  3108945	  3110268	-	lnc-PITRM1-2	lnc-PITRM1-2:1	XLOC_008691	linc-ADARB2-7	PFKP	NA	chr10:3109712-3119519	inter
CUST_23733_PI429285431	1.0159185	A	0.90376806	A	1.08083810278488	0	lncRNA	25296-1_{1..457}	lnc-MBD2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MBD2-2:1	chr18	 51094534	 51094990	-	lnc-MBD2-2	lnc-MBD2-2:1	ENSG00000264263.1	RP11-671P2.1	NA	NA	NA	inter
CUST_9212_PI429285431	0.9177367	A	2.8602846	A	0.260156579604019	0	lncRNA	10723-1_{1..3000}	lnc-RSL24D1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RSL24D1-1:1	chr15	 55469323	 55472322	-	lnc-RSL24D1-1	lnc-RSL24D1-1:1	ENSG00000248800	XLOC_011482	RSL24D1	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90chr15:55473512-55480373"	NA	inter
CUST_32497_PI429285431	0.9276909	A	1.4629309	A	0.690043874677729	0	lncRNA	34164-1_{1..774}	n339101|L27175|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1531|NULL|-1.0776800|-0.3409719	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339101|L27175|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1531|NULL|-1.0776800|-0.3409719	chr16	 18055453	 18056226	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013665	0.92834127	A	0.91346216	A	1.01036677969708	0	lncRNA	TCONS_l2_00029406	NA	NA	NA	NA	XLOC_l2_015239	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015239), lincRNA [TCONS_l2_00029406]"	chr9:75487457-75487398	hs|9q21.13	Agilent_HUMAN_G3V2	TCONS_l2_00029406	TCONS_l2_00029406	chr9	 75487398	 75487457	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44657_PI429285431	2.3086677	A	0.89555013	A	2.6631202441242	0	lncRNA	49219-1_{1..2826}	"gi|223633972|ref|NR_026855.1| Homo sapiens uncharacterized LOC401232 (DKFZP686I15217), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223633972|ref|NR_026855.1| Homo sapiens uncharacterized LOC401232 (DKFZP686I15217), transcript variant 1, non-coding RNA"	Chr6	  2988201	  2991026	+	401232	NR_026855.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001620	3.7380311	P	4.596188	P	0.551656871429817	0	lncRNA	TCONS_00001811	NA	NA	NA	NA	XLOC_001195	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001195), lincRNA [TCONS_00001811]"	chr1:212810798-212810739	hs|1q32.3	Agilent_HUMAN_G3V2	TCONS_00001811	TCONS_00001811	chr1	212810739	212810798	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37514_PI429285431	0.92027324	A	1.0989099	A	0.883537540711434	0	lncRNA	38617-1_{1..2978}	n345987|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1536|NULL|-1.3523300|-0.3279938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n345987|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1536|NULL|-1.3523300|-0.3279938	chr7	 17472875	 17475852	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8115_PI429285431	0.9107158	A	0.903287	A	1.00516253195641	0	lncRNA	9719-1_{1..2648}	lnc-C4orf34-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C4orf34-2:1	chr4	 39958919	 39961566	-	lnc-C4orf34-2	lnc-C4orf34-2:1	ENSG00000246290	ENST00000499303	PDS5A	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80chr4:39948919-39969114"	NA	inner
CUST_1095_PI429285431	5.2568035	P	5.439851	P	0.880840372428567	0	lncRNA	1084-1_{1..883}	"transcript_id ""ENST00000596230.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596230.1"" | genecode_v17"	chr2	145425552	145426434	+	ENSG00000226674.3	ENST00000596230.1	AC074093.1	AC074093.1-022	NA	NA	NA	inter
LNCA_21_P0004739	0.9247074	A	0.9089334	A	1.01099369500694	0	lncRNA	ENST00000427775	NA	CR614876	NA	Hs.571122	XLOC_005640	NA	ENST00000427775	THC2604081	NA	"BROAD Institute lincRNA (XLOC_005640), lincRNA [TCONS_00011467]"	chr6:22589496-22589437	hs|6p22.3	Agilent_HUMAN_G3V2	ENST00000427775	ENST00000427775	chr6	 22589437	 22589496	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16660_PI429285431	4.4332747	P	5.028311	P	0.662027797546078	0	lncRNA	18362-1_{1..316}	lnc-PLD5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLD5-1:1	chr1	242693591	242693906	-	lnc-PLD5-1	lnc-PLD5-1:1	XLOC_001280	linc-PLD5-5	PLD5	NA	chr1:242683591-242687998	inter
CUST_38744_PI429285431	0.9164071	A	0.9192599	A	0.998024543510974	0	lncRNA	39736-1_{1..3000}	n384279|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003dqm.1||-1.2099200|-0.3762285	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384279|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003dqm.1||-1.2099200|-0.3762285	chr3	 86118792	 86121791	+	NA	NA	NA	NA	CADM2	NA	chr3:86108792-86123579	inner
LNCA_21_P0005900	12.841775	P	12.462794	P	1.30042302012926	0	lncRNA	TCONS_00015162	NA	NA	NA	NA	XLOC_007207	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007207), lincRNA [TCONS_00015162]"	chr8:125947534-125947475	hs|8q24.13	Agilent_HUMAN_G3V2	TCONS_00015162	TCONS_00015162	chr8	125947475	125947534	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36353_PI429285431	1.9943476	A	1.7783135	A	1.16153618604092	0	lncRNA	37578-2_{3001..6000}	n344875|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_424|NULL|-1.4420000|-0.3394417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344875|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_424|NULL|-1.4420000|-0.3394417	chr6	111811355	111814354	+	NA	NA	NA	NA	REV3L	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr6:111798355-111804414"	NA	inter
CUST_35519_PI429285431	4.6368413	P	4.243492	P	1.31343909195673	0	lncRNA	36925-2_{3001..4101}	n342623|D90348|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5125|NULL|4.3886300|-0.2427078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342623|D90348|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5125|NULL|4.3886300|-0.2427078	chr4	148405129	148406229	+	NA	NA	NA	NA	EDNRA	NA	chr4:148392129-148466106	inter
CUST_38165_PI429285431	5.9637027	P	4.3748913	P	3.00801424671557	0	lncRNA	39235-2_{3001..3519}	n381409|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001iqe.2||-1.2488100|-0.4433531	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381409|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001iqe.2||-1.2488100|-0.4433531	chr10	 18970048	 18970566	+	NA	NA	NA	NA	ARL5B	NA	chr10:18957048-18966940	inter
CUST_13916_PI429285431	1.3098749	A	2.1405413	A	0.562269462618816	0	lncRNA	15564-1_{1..323}	lnc-NLGN1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NLGN1-1:4	chr3	174177031	174177353	+	lnc-NLGN1-1	lnc-NLGN1-1:4	XLOC_002925	linc-NAALADL2	NA	NA	NA	inter
LNCA_21_P0009649	0.9212642	A	0.9053999	A	1.01105697628621	0	lncRNA	AK125858	NA	AK125858	NA	NA	XLOC_013045	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013045), lincRNA [TCONS_00026786]"	chr19:35345314-35345373	hs|19q13.11	Agilent_HUMAN_G3V2	AK125858	AK125858	chr19	 35345314	 35345373	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29067_PI429285431	0.9115018	A	0.89876807	A	1.00886541612155	0	lncRNA	30796-1_{1..497}	n326558|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026695|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026695|-1.1544400|-0.3885336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326558|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026695|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026695|-1.1544400|-0.3885336	chr1	 77306192	 77306688	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41667_PI429285431	4.096262	P	4.077486	P	1.01309958907122	0	lncRNA	43094-1_{1..85}	ENST00000408812 ncrna:miRNA chromosome:GRCh37:17:46233789:46233873:-1 gene:ENSG00000221739 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408812 ncrna:miRNA chromosome:GRCh37:17:46233789:46233873:-1 gene:ENSG00000221739 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 46233789	 46233873	-	ENSG00000221739	ENST00000408812	NA	NA	SKAP1	NA	chr17:46223789-46243873	inner
CUST_32753_PI429285431	7.0552907	P	6.8458295	P	1.15625627888491	0	lncRNA	34390-1_{1..3000}	n339385|AL832189|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1817|NULL|-1.0622500|-0.2680365	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339385|AL832189|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1817|NULL|-1.0622500|-0.2680365	chr3	 64053639	 64056638	+	NA	NA	NA	NA	PRICKLE2	"hg19_refFlat_PRICKLE2:range=chr3:64084727-641846035'pad=0,hg19_refFlat_PRICKLE2:range=chr3:64084727-641846035'pad=0 3'pad=0 strand=- repeatMasking=none,-101.10chr3:64079526-64098807"	NA	inner
CUST_51820_PI429285431	6.6053715	P	6.9773245	P	0.772735723358566	0	lncRNA	55373-1_{1..748}	hg19_lincRNAsTranscripts_TCONS_l2_00013055 range=chr19:35914755-35920593 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013055 range=chr19:35914755-35920593 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 35914755	 35915502	-	NA	NA	NA	NA	NA	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30"	NA	inter
CUST_48845_PI429285431	4.963967	P	5.5564866	P	0.663183675529297	0	lncRNA	52681-1_{1..370}	hg19_lincRNAsTranscripts_TCONS_l2_00019484 range=chr3:125546116-125581845 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019484 range=chr3:125546116-125581845 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	125546116	125546485	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38032_PI429285431	6.5428824	P	6.473131	P	1.04953581581827	0	lncRNA	39115-2_{3001..3566}	n377604|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029977||-1.1645100|-0.3389575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377604|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029977||-1.1645100|-0.3389575	chr6	  4184124	  4184689	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2740_PI429285431	0.92587066	A	0.9020444	A	1.01665223314339	0	lncRNA	2724-1_{1..568}	"transcript_id ""ENST00000497017.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000497017.1"" | genecode_v17"	chr7	   174920	   175487	+	ENSG00000239715.1	ENST00000497017.1	AC093627.11	AC093627.11-001	NA	NA	NA	inter
LNCA_21_P0013110	0.9190699	A	0.9037708	A	1.01066095532269	0	lncRNA	TCONS_l2_00024971	NA	NA	NA	NA	XLOC_l2_013153	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013153), lincRNA [TCONS_l2_00024971]"	chr6:147283435-147283376	hs|6q24.3	Agilent_HUMAN_G3V2	TCONS_l2_00024971	TCONS_l2_00024971	chr6	147283376	147283435	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007834	3.8313155	P	3.1841502	P	1.56608802025937	0	lncRNA	ENST00000552712	NA	NA	NA	NA	XLOC_009714	NA	ENST00000552712	THC2706107	NA	"BROAD Institute lincRNA (XLOC_009714), lincRNA [TCONS_00021107]"	chr12:42159305-42159364	hs|12q12	Agilent_HUMAN_G3V2	ENST00000552712	ENST00000552712	chr12	 42159305	 42159364	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38206_PI429285431	0.9000582	A	0.89497185	A	1.00353181136147	0	lncRNA	39273-1_{1..3000}	n381562|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ldk.2||1.0501300|-0.3689664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n381562|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ldk.2||1.0501300|-0.3689664	chr10	119806331	119809330	+	NA	NA	NA	NA	RAB11FIP2	NA	chr10:119796331-119806114	inter
CUST_12942_PI429285431	3.901084	P	4.1206727	P	0.858810240984564	0	lncRNA	14570-1_{1..566}	lnc-WRNIP1-2:32	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRNIP1-2:32	chr6	  2481068	  2481633	+	lnc-WRNIP1-2	lnc-WRNIP1-2:32	XLOC_005127	linc-WRNIP1-2	NA	NA	NA	inter
CUST_22400_PI429285431	3.0490751	A	2.759758	A	1.22206167761139	0	lncRNA	23989-1_{1..378}	lnc-GPRC5A-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPRC5A-2:4	chr12	 13136511	 13136888	+	lnc-GPRC5A-2	lnc-GPRC5A-2:4	ENSG00000247498.2	RP11-392P7.8	HEBP1	NA	chr12:13127798-13146747	inner
CUST_19721_PI429285431	0.9311675	A	0.9202457	A	1.00759914291598	0	lncRNA	21379-1_{1..363}	lnc-KIAA0564-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0564-1:1	chr13	 42618243	 42618605	-	lnc-KIAA0564-1	lnc-KIAA0564-1:1	ENSG00000231530.1	RP11-187A9.3	DGKH	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00chr13:42614172-42628383"	NA	inner
CUST_10607_PI429285431	5.7760487	P	6.943922	P	0.445076952345785	0	lncRNA	12136-1_{1..626}	lnc-SRPK2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRPK2-1:3	chr7	104654328	104654953	-	lnc-SRPK2-1	lnc-SRPK2-1:3	XLOC_006554	linc-ORC5-2	MLL5	NA	chr7:104654637-104664516	inter
CUST_33383_PI429285431	1.2897325	A	0.8906919	A	1.31863072258002	0	lncRNA	34961-1_{1..1239}	n340100|AK026195|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2557|NULL|-0.0989770|-0.3709177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340100|AK026195|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2557|NULL|-0.0989770|-0.3709177	chr10	 90775592	 90776830	+	NA	NA	NA	NA	FAS	NA	chr10:90765592-90775542	inter
CUST_10149_PI429285431	0.9139051	A	0.9032458	A	1.00741582578629	0	lncRNA	11673-1_{1..280}	lnc-GJA5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GJA5-1:1	chr1	147210816	147211095	-	lnc-GJA5-1	lnc-GJA5-1:1	XLOC_001006	linc-ACP6	NA	NA	NA	inter
CUST_34320_PI429285431	0.90008175	A	1.1723725	A	0.828003774812435	0	lncRNA	35814-1_{1..890}	n341183|BC039511|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3649|NULL|-1.2156200|-0.3648187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341183|BC039511|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3649|NULL|-1.2156200|-0.3648187	chr7	  9136900	  9137789	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35933_PI429285431	0.9005188	A	0.9033169	A	0.998062384479389	0	lncRNA	37296-2_{3001..5409}	n344571|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_119|NULL|-1.3512800|-0.3379247	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n344571|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_119|NULL|-1.3512800|-0.3379247	chr21	 26937385	 26939793	+	NA	NA	NA	NA	MRPL39	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60chr21:26957968-26961344"	NA	inter
CUST_1194_PI429285431	0.91043097	A	0.9065511	A	1.00269294041894	0	lncRNA	1185-1_{1..882}	"transcript_id ""ENST00000438505.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438505.1"" | genecode_v17"	chr2	195208993	195209874	+	ENSG00000225539.1	ENST00000438505.1	AC018799.1	AC018799.1-002	NA	NA	NA	inter
CUST_5754_PI429285431	4.4810953	P	7.1860576	P	0.153364629774992	0	lncRNA	5679-1_{1..440}	"transcript_id ""ENST00000442355.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442355.2"" | genecode_v17"	chr17	 18981088	 18981527	+	ENSG00000230197.2	ENST00000442355.2	RP11-160E2.17	RP11-160E2.17-001	LOC100132472	NA	chr17:18986174-18997365	inter
CUST_7361_PI429285431	0.91437274	A	1.3730708	A	0.727642613375274	0	lncRNA	9007-1_{1..685}	lnc-EGFLAM-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EGFLAM-2:3	chr5	 38579248	 38579932	+	lnc-EGFLAM-2	lnc-EGFLAM-2:3	ENSG00000244968	CTD-2196P11.1	LIFR	NA	chr5:38569248-38589696	inner
CUST_10042_PI429285431	2.1409774	A	2.214087	A	0.950586883417352	0	lncRNA	11570-1_{1..3000}	lnc-DR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DR1-1:1	chr1	 93797269	 93800268	+	lnc-DR1-1	lnc-DR1-1:1	XLOC_000294	linc-DR1	DR1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60chr1:93811478-93815355"	NA	inter
CUST_20260_PI429285431	0.9271934	A	0.9079735	A	1.01341135565244	0	lncRNA	21903-1_{1..323}	lnc-TSR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TSR1-1:1	chr17	  2119199	  2119521	-	lnc-TSR1-1	lnc-TSR1-1:1	ENSG00000236457.1	AC130689.5	SMG6	NA	chr17:2109199-2129309	inner
CUST_35334_PI429285431	6.052361	P	5.455838	P	1.51206797776977	0	lncRNA	36743-1_{1..1005}	n342372|U82319|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4864|NULL|1.5014400|-0.3080891	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342372|U82319|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4864|NULL|1.5014400|-0.3080891	chr13	 24902845	 24903849	+	NA	NA	NA	NA	C1QTNF9	NA	chr13:24892845-24896669	inter
CUST_7127_PI429285431	3.4593523	P	3.1620135	A	1.22887553356059	0	lncRNA	7064-1_{1..543}	"transcript_id ""ENST00000420988.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420988.1"" | genecode_v17"	chrX	152435672	152436214	-	ENSG00000237736.1	ENST00000420988.1	U82670.4	U82670.4-002	NA	NA	NA	inter
CUST_38028_PI429285431	2.488617	A	3.6417356	A	0.449652189881941	0	lncRNA	39112-2_{3001..5661}	n377601|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029974||0.6585910|-0.2682644	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377601|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029974||0.6585910|-0.2682644	chr6	  2406916	  2409576	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10"	NA	inter
CUST_1151_PI429285431	0.8983532	A	1.7623969	A	0.549410466601186	0	lncRNA	1140-1_{1..779}	"transcript_id ""ENST00000425688.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425688.1"" | genecode_v17"	chr2	166651361	166652139	+	ENSG00000235192.1	ENST00000425688.1	AC009495.2	AC009495.2-001	GALNT3	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-24.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50chr2:166641361-166650803"	NA	inter
CUST_25616_PI429285431	0.9273632	A	0.9187194	A	1.00600941008932	0	lncRNA	27145-1_{1..959}	lnc-JMJD7-PLA2G4B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JMJD7-PLA2G4B-1:3	chr15	 42187183	 42188141	+	lnc-JMJD7-PLA2G4B-1	lnc-JMJD7-PLA2G4B-1:3	ENSG00000174171.3	RP11-23P13.6	EHD4	NA	chr15:42191638-42198141	inter
CUST_44019_PI429285431	3.277453	A	2.7157812	A	1.47597859578142	0	lncRNA	48705-1_{1..3000}	"gi|371118729|ref|NR_045769.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|371118729|ref|NR_045769.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 8, non-coding RNA"	Chr2	175936978	175939977	-	1386	NR_045769.1	NA	NA	NA	NA	NA	inter
CUST_39274_PI429285431	12.451075	P	11.970993	P	1.39482294313983	0	lncRNA	40246-1_{1..1036}	n386230|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010euw.2||3.3354500|-0.2121603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386230|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010euw.2||3.3354500|-0.2121603	chr19	 59086765	 59087800	+	NA	NA	NA	NA	MZF1	"hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90chr19:59076765-59084942"	NA	inter
CUST_12291_PI429285431	1.164788	A	1.9232634	A	0.59112068065596	0	lncRNA	13902-1_{1..274}	lnc-YWHAH-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-YWHAH-2:1	chr22	 32369374	 32369647	+	lnc-YWHAH-2	lnc-YWHAH-2:1	XLOC_014212	linc-SLC5A1-1	NA	NA	NA	inter
CUST_39879_PI429285431	0.89301836	A	0.8925658	A	1.0003137398941	0	lncRNA	40770-1_{1..3000}	n406543|NR_024052_6|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_6||-1.2453200|-0.3296761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406543|NR_024052_6|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_6||-1.2453200|-0.3296761	chr6	  1767196	  1770195	-	NA	NA	NA	NA	GMDS	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10chr6:1757196-1816933"	NA	inner
CUST_6214_PI429285431	1.9095515	A	2.3438814	A	0.740037405848241	0	lncRNA	6140-1_{1..379}	"transcript_id ""ENST00000590797.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590797.1"" | genecode_v17"	chr18	 56113507	 56113885	+	ENSG00000267391.1	ENST00000590797.1	RP11-1151B14.3	RP11-1151B14.3-001	NA	NA	NA	inter
CUST_30373_PI429285431	2.2442567	A	2.6100678	A	0.776032457822705	0	lncRNA	32149-1_{1..327}	n335477|AY845867|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257890|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257890|-1.3482100|-0.2216418	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335477|AY845867|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257890|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257890|-1.3482100|-0.2216418	chr14	 95599757	 95600083	-	NA	NA	NA	NA	DICER1	NA	chr14:95589757-95623759	inter
CUST_33471_PI429285431	0.92369527	A	0.90833014	A	1.0107072128256	0	lncRNA	35044-1_{1..2961}	n340206|AX746903|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2667|NULL|3.1126300|-0.2407100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340206|AX746903|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2667|NULL|3.1126300|-0.2407100	chr4	120548944	120551904	+	NA	NA	NA	NA	PDE5A	"hg19_refFlat_PDE5A:range=chr4:120419756-1205498265'pad=0,hg19_refFlat_PDE5A:range=chr4:120419756-1205498265'pad=0 3'pad=0 strand=- repeatMasking=none,-101.40chr4:120538944-120549981"	NA	inner
CUST_44462_PI429285431	0.9053329	A	0.9026966	A	1.00182901452243	0	lncRNA	49066-1_{1..2475}	"gi|153791949|ref|NR_003612.1| Homo sapiens family with sequence similarity 92, member A1 pseudogene 2 (FAM92A1P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|153791949|ref|NR_003612.1| Homo sapiens family with sequence similarity 92, member A1 pseudogene 2 (FAM92A1P2), non-coding RNA"	Chr4	183958818	183961292	+	403315	NR_003612.1	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
CUST_40829_PI429285431	4.425207	P	4.532547	P	0.928298054484773	0	lncRNA	41532-1_{1..1201}	n410599|NR_037853_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037853_3||0.3950680|-0.2672772	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410599|NR_037853_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037853_3||0.3950680|-0.2672772	chr6	  2812683	  2813883	-	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10"	NA	inter
CUST_16708_PI429285431	0.9193054	A	1.2110178	A	0.816931829527409	0	lncRNA	18414-1_{1..651}	lnc-CXCR3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CXCR3-4:1	chrX	 71004123	 71004773	-	lnc-CXCR3-4	lnc-CXCR3-4:1	XLOC_008182	linc-CXorf49B-2	NA	NA	NA	inter
CUST_30011_PI429285431	0.90824056	A	0.90522623	A	1.00209155860433	0	lncRNA	31779-1_{1..234}	n334444|U10514|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218012|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218012|-1.2423000|-0.3319437	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334444|U10514|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218012|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218012|-1.2423000|-0.3319437	chr5	  9361864	  9362097	-	NA	NA	NA	NA	SEMA5A	NA	chr5:9351864-9372098	inner
CUST_37579_PI429285431	0.9212005	A	0.9263146	A	0.996461451475143	0	lncRNA	38681-1_{1..1017}	n346055|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1605|NULL|-1.3081500|-0.2705940	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346055|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1605|NULL|-1.3081500|-0.2705940	chr6	127185938	127186954	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28313_PI429285431	10.013643	P	10.040413	P	0.981615544310584	0	lncRNA	29958-1_{1..514}	n325618|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045980|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045980|-1.2946800|-0.1959796	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325618|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045980|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045980|-1.2946800|-0.1959796	chr13	114113135	114113648	-	NA	NA	NA	NA	ADPRHL1	NA	chr13:114103135-114107839	inner
CUST_8230_PI429285431	3.9470196	P	4.168353	P	0.857772280405514	0	lncRNA	9821-1_{1..1035}	lnc-KCNT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KCNT1-2:1	chr9	138901384	138902418	+	lnc-KCNT1-2	lnc-KCNT1-2:1	ENSG00000251337	AL355574.1	NACC2	NA	chr9:138898383-138911544	inner
CUST_44712_PI429285431	1.9664234	A	2.370376	A	0.755784795192932	0	lncRNA	49267-1_{1..600}	"gi|223555922|ref|NR_026816.1| Homo sapiens psoriasis susceptibility 1 candidate 3 (non-protein coding) (PSORS1C3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223555922|ref|NR_026816.1| Homo sapiens psoriasis susceptibility 1 candidate 3 (non-protein coding) (PSORS1C3), non-coding RNA"	Chr6	 31141512	 31142111	-	100130889	NR_026816.1	NA	NA	NA	NA	NA	inter
CUST_48835_PI429285431	9.874544	P	9.888081	P	0.990660750848347	0	lncRNA	52673-1_{1..648}	hg19_lincRNAsTranscripts_TCONS_l2_00019769 range=chr3:22423310-22597727 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019769 range=chr3:22423310-22597727 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	 22423310	 22423957	+	NA	NA	NA	NA	LOC100505836	NA	chr3:22413310-22414019	inter
CUST_45862_PI429285431	0.91410303	A	0.91619337	A	0.998552135890652	0	lncRNA	50191-1_{1..818}	"gi|310120740|ref|XR_110893.1| PREDICTED: Homo sapiens uncharacterized LOC100506113, transcript variant 1 (LOC100506113), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310120740|ref|XR_110893.1| PREDICTED: Homo sapiens uncharacterized LOC100506113, transcript variant 1 (LOC100506113), misc_RNA"	Chr11	 75524803	 75525620	-	100506113	XR_110893.2	NA	NA	NA	NA	NA	inter
CUST_16429_PI429285431	0.92923987	A	0.9112053	A	1.01257907057875	0	lncRNA	18129-1_{1..287}	lnc-LAMA2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LAMA2-1:3	chr6	129014070	129014356	+	lnc-LAMA2-1	lnc-LAMA2-1:3	XLOC_005461	linc-LAMA2	NA	NA	NA	inter
CUST_36700_PI429285431	0.9274477	A	0.9143928	A	1.00909003280439	0	lncRNA	37881-1_{1..2639}	n345188|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_737|NULL|-1.3060100|-0.3555178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345188|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_737|NULL|-1.3060100|-0.3555178	chr12	 93970039	 93972677	-	NA	NA	NA	NA	SOCS2	NA	chr12:93963598-93969978	inner
CUST_35642_PI429285431	3.4289744	P	3.5761445	P	0.903020033897978	0	lncRNA	37057-1_{1..1261}	n342787|AK026219|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5290|NULL|-0.3973850|-0.1056073	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n342787|AK026219|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5290|NULL|-0.3973850|-0.1056073	chr11	117066328	117067588	-	NA	NA	NA	NA	PCSK7	"hg19_refFlat_SIDT2:range=chr11:117049980-1170667825'pad=0,hg19_refFlat_SIDT2:range=chr11:117049980-1170667825'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00chr11:117075788-117082630"	NA	inner
CUST_50600_PI429285431	5.4259415	P	5.767734	P	0.78906032169089	0	lncRNA	54288-1_{1..549}	hg19_lincRNAsTranscripts_TCONS_l2_00003169 range=chr10:92792905-92821945 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003169 range=chr10:92792905-92821945 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 92792905	 92793453	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24143_PI429285431	0.9173831	A	0.90860456	A	1.00610337037481	0	lncRNA	25695-1_{1..437}	lnc-LRRC8C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC8C-1:1	chr1	 90141790	 90142226	+	lnc-LRRC8C-1	lnc-LRRC8C-1:1	ENSG00000230735.1	RP11-413E1.4	LRRC8C	NA	chr1:90131790-90151945	inner
CUST_42894_PI429285431	1.2205716	A	1.3956122	A	0.885742592382408	0	lncRNA	45987-1_{1..170}	ENST00000516868 ncrna:snoRNA chromosome:GRCh37:18:19291911:19292080:-1 gene:ENSG00000252677 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516868 ncrna:snoRNA chromosome:GRCh37:18:19291911:19292080:-1 gene:ENSG00000252677 gene_biotype:snoRNA transcript_biotype:snoRNA	chr18	 19291911	 19292080	-	ENSG00000252677	ENST00000516868	NA	NA	ABHD3	NA	chr18:19281911-19284766	inter
CUST_25513_PI429285431	0.977592	A	1.0763481	A	0.93383780488058	0	lncRNA	27043-1_{1..2138}	lnc-SAP30-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:1	chr4	174503856	174505993	+	lnc-SAP30-5	lnc-SAP30-5:1	ENSG00000237125.3	RP11-471J12.1	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_HAND2:range=chr4:174448428-1744504405'pad=0,hg19_refFlat_HAND2:range=chr4:174448428-1744504405'pad=0 3'pad=0 strand=- repeatMasking=none,-103.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60"	NA	inter
CUST_27342_PI429285431	0.9260112	A	0.9281575	A	0.998513404286104	0	lncRNA	28903-1_{1..518}	n324499|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040895|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040895|-0.8856300|-0.3497652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324499|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040895|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040895|-0.8856300|-0.3497652	chr6	 52119570	 52120087	-	NA	NA	NA	NA	MCM3	NA	chr6:52128812-52134182	inter
CUST_20558_PI429285431	9.15169	P	9.396292	P	0.844048613881477	0	lncRNA	22199-1_{1..352}	lnc-RECQL5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RECQL5-1:1	chr17	 73676024	 73676375	-	lnc-RECQL5-1	lnc-RECQL5-1:1	ENSG00000264829.1	RP11-474I11.8	SAP30BP	NA	chr17:73666024-73686047	inner
CUST_27209_PI429285431	1.5941966	A	1.3670717	A	1.17049997204978	0	lncRNA	28751-1_{1..466}	n324341|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042630|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042630|-1.2068700|-0.2407791	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324341|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042630|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042630|-1.2068700|-0.2407791	chr6	149580829	149581294	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33407_PI429285431	13.000051	P	12.926544	P	1.05227150940191	0	lncRNA	34986-1_{1..2790}	n340130|AK123345|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2589|NULL|0.7147030|-0.2458411	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340130|AK123345|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2589|NULL|0.7147030|-0.2458411	chr10	103847545	103850334	-	NA	NA	NA	NA	NA	"hg19_refFlat_SKP1:range=chr5:133493424-1335097135'pad=0,hg19_refFlat_SKP1:range=chr5:133493424-1335097135'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_SKP1:range=chr5:133494119-1335097135'pad=0,hg19_refFlat_SKP1:range=chr5:133494119-1335097135'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70"	NA	inter
CUST_34580_PI429285431	4.887989	P	5.5321074	P	0.639883690391819	0	lncRNA	36038-1_{1..1975}	n341464|BC043400|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3934|NULL|-0.3099620|-0.1714693	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341464|BC043400|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3934|NULL|-0.3099620|-0.1714693	chr8	 22863895	 22865869	-	NA	NA	NA	NA	TNFRSF10B	"hg19_refFlat_RHOBTB2:range=chr8:22852097-228749825'pad=0,hg19_refFlat_RHOBTB2:range=chr8:22852097-228749825'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.60;hg19_refFlat_RHOBTB2:range=chr8:22853385-228749825'pad=0,hg19_refFlat_RHOBTB2:range=chr8:22853385-228749825'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.60;hg19_refFlat_RHOBTB2:range=chr8:22861948-228749825'pad=0,hg19_refFlat_RHOBTB2:range=chr8:22861948-228749825'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.60chr8:22877646-22886848"	NA	inner
CUST_17840_PI429285431	3.3209016	P	2.593118	A	1.65609289498928	0	lncRNA	19575-1_{1..808}	lnc-PPP2R2D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP2R2D-1:1	chr10	133773025	133773832	+	lnc-PPP2R2D-1	lnc-PPP2R2D-1:1	XLOC_008672	linc-JAKMIP3-3	BNIP3	NA	chr10:133781204-133783355	inter
CUST_28012_PI429285431	0.89881617	A	0.9077649	A	0.993816410600679	0	lncRNA	29622-1_{1..2100}	n325268|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328266|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328266|-1.2871400|-0.3188664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325268|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328266|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328266|-1.2871400|-0.3188664	chr2	 67203992	 67206091	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80"	NA	inter
CUST_33337_PI429285431	9.404596	P	9.20959	P	1.14472892138253	0	lncRNA	34919-1_{1..1220}	n340056|CR604878|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2511|NULL|2.0383300|-0.1847820	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340056|CR604878|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2511|NULL|2.0383300|-0.1847820	chr4	 56814121	 56815340	-	NA	NA	NA	NA	CEP135	NA	chr4:56815037-56825341	inner
CUST_4583_PI429285431	0.92562926	A	0.96898866	A	0.970392698244448	0	lncRNA	4532-1_{1..399}	"transcript_id ""ENST00000415283.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415283.1"" | genecode_v17"	chr13	 31569299	 31569697	-	ENSG00000230403.1	ENST00000415283.1	RP11-252M21.7	RP11-252M21.7-001	NA	NA	NA	inter
CUST_26311_PI429285431	4.666258	P	4.7307076	P	0.956310088156033	0	lncRNA	27817-1_{1..618}	lnc-RP11-279O9.4.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-279O9.4.1-2:1	chr4	186596257	186596874	+	lnc-RP11-279O9.4.1-2	lnc-RP11-279O9.4.1-2:1	ENSG00000235902.1	RP11-626E13.1	SORBS2	NA	chr4:186586257-186606571	inner
CUST_15472_PI429285431	0.9205939	A	1.6859599	A	0.58830410170972	0	lncRNA	17160-1_{1..927}	lnc-KIAA1383-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1383-1:3	chr1	233033019	233033945	+	lnc-KIAA1383-1	lnc-KIAA1383-1:3	XLOC_000618	linc-C1orf57-2	NA	NA	NA	inter
CUST_25446_PI429285431	4.4574847	P	5.074677	P	0.651938463523682	0	lncRNA	26976-1_{1..530}	lnc-TK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TK2-1:1	chr16	 66515067	 66515596	-	lnc-TK2-1	lnc-TK2-1:1	ENSG00000261656.1	CTD-2258A20.5	BEAN1	NA	chr16:66505067-66525133	inner
CUST_30548_PI429285431	4.5927734	P	5.00672	P	0.750567329786798	0	lncRNA	32329-1_{1..344}	n335725|CR749453|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000306481|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000306481|-1.4871600|-0.1211442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335725|CR749453|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000306481|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000306481|-1.4871600|-0.1211442	chr16	  2014996	  2015339	+	NA	NA	NA	NA	RNF151	NA	chr16:2016875-2018976	inter
LNCA_21_P0010129	1.1670138	A	1.100267	A	1.0473522955442	0	lncRNA	TCONS_00028725	NA	NA	NA	NA	XLOC_013838	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013838), lincRNA [TCONS_00028725]"	chr20:61418340-61418281	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028725	TCONS_00028725	chr20	 61418281	 61418340	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009606	0.92726225	A	0.9241923	A	1.00213019283077	0	lncRNA	TCONS_00026615	NA	NA	NA	NA	XLOC_012664	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012664), lincRNA [TCONS_00026615]"	chr18:37245461-37245520	hs|18q12.3	Agilent_HUMAN_G3V2	TCONS_00026615	TCONS_00026615	chr18	 37245461	 37245520	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14180_PI429285431	1.0230086	A	1.813472	A	0.578158355114929	0	lncRNA	15832-1_{1..722}	lnc-TK2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TK2-4:2	chr16	 66167669	 66168390	-	lnc-TK2-4	lnc-TK2-4:2	XLOC_011980	linc-CDH11-2	NA	NA	NA	inter
CUST_40548_PI429285431	8.006891	P	7.0497856	P	1.94141076938862	0	lncRNA	41306-1_{1..619}	n409677|NR_034078|lncRNA|Homosapiens||RefGeneNoncode|NR_034078||1.9475500|-0.2285946	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409677|NR_034078|lncRNA|Homosapiens||RefGeneNoncode|NR_034078||1.9475500|-0.2285946	chr11	104772275	104772893	-	NA	NA	NA	NA	CASP12	NA	chr11:104762275-104769397	inter
CUST_33587_PI429285431	0.92064595	A	2.1312294	A	0.432093834341776	0	lncRNA	35152-1_{1..336}	n340340|U10508|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2801|NULL|-0.8310320|-0.1494575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340340|U10508|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2801|NULL|-0.8310320|-0.1494575	chr5	  9389596	  9389931	+	NA	NA	NA	NA	SEMA5A	NA	chr5:9379596-9399933	inner
CUST_12537_PI429285431	1.7838926	A	2.46775	A	0.622498644151793	0	lncRNA	14149-1_{1..1199}	lnc-B4GALT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-B4GALT1-1:1	chr9	 33171160	 33172358	-	lnc-B4GALT1-1	lnc-B4GALT1-1:1	XLOC_007667	linc-B4GALT1	B4GALT1	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00chr9:33161160-33167356"	NA	inter
LNCA_21_P0012369	0.9334612	A	0.9254755	A	1.00555061332668	0	lncRNA	TCONS_l2_00018477	NA	NA	NA	NA	XLOC_l2_009652	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009652), lincRNA [TCONS_l2_00018477]"	chr3:27675455-27688215	hs|3p24.1	Agilent_HUMAN_G3V2	TCONS_l2_00018477	TCONS_l2_00018477	chr3	 27675455	 27688215	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18334_PI429285431	0.91792846	A	0.91961306	A	0.998833005727676	0	lncRNA	20063-1_{1..1359}	lnc-PKN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PKN2-1:1	chr1	 89514767	 89516125	+	lnc-PKN2-1	lnc-PKN2-1:1	ENSG00000247275	AL160008.1	GBP1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50chr1:89517987-89525726"	NA	inter
CUST_51478_PI429285431	3.4675806	P	3.7894187	P	0.800049905318475	0	lncRNA	55053-1_{1..783}	hg19_lincRNAsTranscripts_TCONS_l2_00009701 range=chr16:34269170-34285938 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009701 range=chr16:34269170-34285938 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 34269170	 34269952	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32342_PI429285431	0.9304563	A	1.811554	A	0.542954157800173	0	lncRNA	34022-3_{6001..6794}	n338920|CR749844|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1346|NULL|0.4480540|-0.3244629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338920|CR749844|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1346|NULL|0.4480540|-0.3244629	chr2	100895908	100896701	-	NA	NA	NA	NA	LONRF2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30chr2:100889753-100908479"	NA	inner
CUST_35449_PI429285431	3.3301516	P	3.4131825	P	0.944072198561341	0	lncRNA	36855-2_{3001..5644}	n342524|BX648100|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5019|NULL|0.7153140|-0.1942101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342524|BX648100|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5019|NULL|0.7153140|-0.1942101	chr21	 15218453	 15221096	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2694_PI429285431	0.9104004	A	0.9113339	A	0.999353156400527	0	lncRNA	2680-1_{1..439}	"transcript_id ""ENST00000454826.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454826.1"" | genecode_v17"	chr6	161293926	161294364	-	ENSG00000224371.1	ENST00000454826.1	RP11-235G24.1	RP11-235G24.1-001	NA	NA	NA	inter
CUST_51429_PI429285431	5.4070234	P	5.582574	P	0.885429533229554	0	lncRNA	55007-2_{3001..4137}	hg19_lincRNAsTranscripts_TCONS_l2_00009611 range=chr16:16450071-16464251 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009611 range=chr16:16450071-16464251 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 16453071	 16454207	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1795_PI429285431	4.136112	P	4.4592705	P	0.799318009391991	0	lncRNA	1781-1_{1..768}	"transcript_id ""ENST00000507344.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507344.1"" | genecode_v17"	chr4	 66724479	 66725246	+	ENSG00000251527.1	ENST00000507344.1	RP11-51P8.1	RP11-51P8.1-001	NA	NA	NA	inter
CUST_43810_PI429285431	2.5934045	A	2.629029	A	0.975609356933266	0	lncRNA	48536-1_{1..1897}	"gi|341915154|ref|XR_132706.1| PREDICTED: Homo sapiens uncharacterized LOC100507630 (LOC100507630), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915154|ref|XR_132706.1| PREDICTED: Homo sapiens uncharacterized LOC100507630 (LOC100507630), misc_RNA"	NA	NA	NA	NA	NA	XR_132706.1	NA	NA	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90"	NA	Unknown
CUST_30723_PI429285431	7.482354	P	7.1414504	P	1.26654962082489	0	lncRNA	32505-1_{1..360}	n336269|Y10209|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325570|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325570|-1.1868000|-0.2962316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336269|Y10209|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325570|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325570|-1.1868000|-0.2962316	chr6	 25318492	 25318851	-	NA	NA	NA	NA	LRRC16A	NA	chr6:25308492-25328861	inner
CUST_27964_PI429285431	0.91497123	A	0.9718799	A	0.961321783064906	0	lncRNA	29568-1_{1..451}	n325213|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329250|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329250|1.0291200|-0.3165344	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325213|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329250|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329250|1.0291200|-0.3165344	chr2	104566041	104566491	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17101_PI429285431	1.2489208	A	1.4941568	A	0.843677773723927	0	lncRNA	18810-1_{1..257}	lnc-NRK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NRK-1:1	chrX	105253151	105253407	+	lnc-NRK-1	lnc-NRK-1:1	XLOC_008041	linc-MUM1L1	NA	NA	NA	inter
CUST_13033_PI429285431	4.34549	P	4.5979843	P	0.839443831196134	0	lncRNA	14658-1_{1..973}	lnc-NCOR2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCOR2-3:1	chr12	124691050	124692022	-	lnc-NCOR2-3	lnc-NCOR2-3:1	XLOC_010233	linc-CCDC92-3	ZNF664-FAM101A	NA	chr12:124681050-124701914	inner
CUST_6169_PI429285431	3.1954174	P	3.0962887	P	1.07112637201606	0	lncRNA	6093-1_{1..1036}	"transcript_id ""ENST00000591199.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591199.1"" | genecode_v17"	chr18	 39766635	 39767670	+	ENSG00000267586.2	ENST00000591199.1	RP11-21F16.1	RP11-21F16.1-005	NA	NA	NA	inter
CUST_33792_PI429285431	3.206604	P	3.8133037	P	0.656697241395364	0	lncRNA	35345-1_{1..2159}	n340581|BC001556|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3043|NULL|5.0793200|-0.1891268	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340581|BC001556|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3043|NULL|5.0793200|-0.1891268	chr17	 26925807	 26927965	+	NA	NA	NA	NA	SPAG5	"hg19_refFlat_SPAG5:range=chr17:26904717-269259645'pad=0,hg19_refFlat_SPAG5:range=chr17:26904717-269259645'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_KIAA0100:range=chr17:26942082-269720745'pad=0,hg19_refFlat_KIAA0100:range=chr17:26942082-269720745'pad=0 3'pad=0 strand=- repeatMasking=none,-97.60chr17:26915807-26926056"	NA	inner
CUST_36021_PI429285431	4.5550437	P	5.3724546	P	0.567459407571084	0	lncRNA	37353-1_{1..1744}	n344633|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_181|NULL|-1.3820000|-0.1657271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344633|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_181|NULL|-1.3820000|-0.1657271	chr11	  6741850	  6743593	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010566	0.9295195	A	0.9151544	A	1.01000686571073	0	lncRNA	TCONS_l2_00000673	NA	NA	NA	NA	XLOC_l2_000489	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000489), lincRNA [TCONS_l2_00000673]"	chr1:166543922-166543981	hs|1q24.1	Agilent_HUMAN_G3V2	TCONS_l2_00000673	TCONS_l2_00000673	chr1	166543922	166543981	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7657_PI429285431	0.90657073	A	0.90029836	A	1.00435714043414	0	lncRNA	9289-1_{1..2269}	lnc-IL12RB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-IL12RB2-1:1	chr1	 67865109	 67867377	+	lnc-IL12RB2-1	lnc-IL12RB2-1:1	ENSG00000249294	ENST00000506150	SERBP1	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80chr1:67873493-67876317"	NA	inter
CUST_36503_PI429285431	2.359096	P	1.3464378	A	2.01762519992567	0	lncRNA	37702-1_{1..1840}	n345003|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_552|NULL|-1.6126000|-0.3403807	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345003|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_552|NULL|-1.6126000|-0.3403807	chr8	 66504084	 66505923	-	NA	NA	NA	NA	ARMC1	NA	chr8:66514691-66519987	inter
CUST_23069_PI429285431	2.3293333	A	3.1426318	P	0.569079257334318	0	lncRNA	24640-1_{1..407}	lnc-HEATR4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HEATR4-1:1	chr14	 74100365	 74100771	-	lnc-HEATR4-1	lnc-HEATR4-1:1	ENSG00000258603.1	RP3-414A15.10	NA	"hg19_refFlat_ACOT6:range=chr14:74083879-740865435'pad=0,hg19_refFlat_ACOT6:range=chr14:74083879-740865435'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40"	NA	inter
CUST_19413_PI429285431	0.9128528	A	1.0932968	A	0.882431379755432	0	lncRNA	21074-1_{1..624}	lnc-NFKBIA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NFKBIA-1:1	chr14	 35832774	 35833397	-	lnc-NFKBIA-1	lnc-NFKBIA-1:1	ENSG00000258860.1	RP11-561B11.3	NA	NA	NA	inter
LNCA_21_P0010888	5.9197407	P	6.120145	P	0.870306634904926	0	lncRNA	TCONS_l2_00003640	NA	NA	NA	NA	XLOC_l2_002033	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002033), lincRNA [TCONS_l2_00003640]"	chr10:81451533-81451474	hs|10q22.3	Agilent_HUMAN_G3V2	TCONS_l2_00003640	TCONS_l2_00003640	chr10	 81451474	 81451533	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3381117	1.9983076	A	1.6496171	A	1.27340426381163	0	lncRNA	XR_132703	XR_132703	XR_132703	100128563	Hs.689442	LOC100128563	uncharacterized LOC100128563	NA	THC2489122	NA	"PREDICTED: Homo sapiens hypothetical LOC100128563 (LOC100128563), miscRNA [XR_132703]"	chr2:240269810-240269751	hs|2q37.3	Agilent_HUMAN_G3V2	XR_132703	XR_132703	chr2	240269751	240269810	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1826_PI429285431	0.91165185	A	0.90789443	A	1.00260783959257	0	lncRNA	1815-1_{1..527}	"transcript_id ""ENST00000508099.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508099.1"" | genecode_v17"	chr4	104298160	104298686	+	ENSG00000248740.1	ENST00000508099.1	RP11-328K4.1	RP11-328K4.1-003	NA	NA	NA	inter
CUST_24004_PI429285431	2.3803701	A	2.0794575	A	1.23192343995285	0	lncRNA	25558-1_{1..3000}	lnc-C17orf84-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-C17orf84-1:2	chr17	 17091982	 17094981	+	lnc-C17orf84-1	lnc-C17orf84-1:2	ENSG00000259850.1	RP11-45M22.1	MPRIP	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr17:17081982-17095962"	NA	inner
CUST_44484_PI429285431	1.243149	A	1.7479304	A	0.704767157191712	0	lncRNA	49087-1_{1..2583}	"gi|157266267|ref|NR_003713.1| Homo sapiens programmed cell death 6 pseudogene (LOC728613), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|157266267|ref|NR_003713.1| Homo sapiens programmed cell death 6 pseudogene (LOC728613), non-coding RNA"	Chr5	  1597672	  1600254	-	728613	NR_003713.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CCDC127:range=chr5:205412-2169645'pad=0,hg19_refFlat_CCDC127:range=chr5:205412-2169645'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80"	NA	inter
CUST_38518_PI429285431	0.9167358	A	0.9933524	A	0.948278939266928	0	lncRNA	39529-1_{1..1605}	n383154|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002hmk.1||-0.0894900|-0.1953058	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383154|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002hmk.1||-0.0894900|-0.1953058	chr17	 34791544	 34793148	-	NA	NA	NA	NA	TBC1D3G	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NOS2:range=chr17:26084272-261258355'pad=0,hg19_refFlat_NOS2:range=chr17:26084272-261258355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10chr17:34797174-34803149"	NA	inter
CUST_27030_PI429285431	3.130625	P	3.3818917	P	0.840158424213333	0	lncRNA	28561-1_{1..839}	n324136|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052014|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052014|3.6580000|-0.0751681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324136|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052014|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052014|3.6580000|-0.0751681	chr9	 32633100	 32633938	-	NA	NA	NA	NA	TAF1L	NA	chr9:32629452-32635667	inner
CUST_47318_PI429285431	2.6825666	A	1.1086076	A	2.97720589981392	0	lncRNA	51378-1_{1..3000}	"gi|307574675|ref|NR_036633.1| Homo sapiens VAMP (vesicle-associated membrane protein)-associated protein B and C (VAPB), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|307574675|ref|NR_036633.1| Homo sapiens VAMP (vesicle-associated membrane protein)-associated protein B and C (VAPB), transcript variant 3, non-coding RNA"	Chr20	 56964175	 56967174	+	9217	NR_036633.1	NA	NA	NA	NA	NA	inter
CUST_40341_PI429285431	8.209927	P	8.273439	P	0.956931791105034	0	lncRNA	41146-1_{1..1853}	n409058|NR_031764|lncRNA|Homosapiens||RefGeneNoncode|NR_031764||3.6181700|-0.1724098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409058|NR_031764|lncRNA|Homosapiens||RefGeneNoncode|NR_031764||3.6181700|-0.1724098	chr5	 36035118	 36036970	-	NA	NA	NA	NA	UGT3A2	NA	chr5:36035119-36067023	inter
CUST_26380_PI429285431	8.731089	P	8.778716	P	0.967526445338526	0	lncRNA	27887-1_{1..3000}	lnc-TRIM32-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM32-1:1	chr9	119344217	119347216	+	lnc-TRIM32-1	lnc-TRIM32-1:1	ENSG00000230894.1	RP11-67K19.3	ASTN2	NA	chr9:119334217-119358607	inner
CUST_51434_PI429285431	1.8599579	A	1.6354129	A	1.16840869541399	0	lncRNA	55011-1_{1..364}	hg19_lincRNAsTranscripts_TCONS_l2_00009629 range=chr16:21353828-21358759 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009629 range=chr16:21353828-21358759 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 21353828	 21354191	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14860_PI429285431	1.1207974	A	0.91832775	A	1.15066641638908	0	lncRNA	16523-1_{1..248}	lnc-ABCA5-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABCA5-4:1	chr17	 68884682	 68884929	-	lnc-ABCA5-4	lnc-ABCA5-4:1	XLOC_012562	linc-ABCA5-1	NA	NA	NA	inter
CUST_24981_PI429285431	0.9132979	A	0.9106199	A	1.00185797204463	0	lncRNA	26521-1_{1..669}	lnc-REG3A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-REG3A-1:1	chr2	 79727788	 79728456	-	lnc-REG3A-1	lnc-REG3A-1:1	ENSG00000229385.1	AC010975.1	NA	NA	NA	inter
CUST_45885_PI429285431	0.9133637	A	0.907272	A	1.00423137175963	0	lncRNA	50206-3_{6001..9000}	"gi|403048747|ref|NR_073142.1| Homo sapiens progesterone receptor (PGR), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|403048747|ref|NR_073142.1| Homo sapiens progesterone receptor (PGR), transcript variant 5, non-coding RNA"	Chr11	100906355	100909354	-	5241	NR_073142.2	NA	NA	NA	NA	NA	inter
CUST_9251_PI429285431	7.250018	P	7.6152954	P	0.776319590673152	0	lncRNA	10760-1_{1..586}	lnc-USP35-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP35-1:7	chr11	 77852641	 77853226	+	lnc-USP35-1	lnc-USP35-1:7	ENSG00000246174	RP11-705O3.1	ALG8	NA	chr11:77842641-77850699	inter
CUST_37531_PI429285431	4.935995	P	4.941216	P	0.996387618974339	0	lncRNA	38635-1_{1..399}	n346006|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1555|NULL|-1.2757600|-0.1338410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346006|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1555|NULL|-1.2757600|-0.1338410	chr1	 17086934	 17087332	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47261_PI429285431	10.32246	P	10.269682	P	1.03726031204302	0	lncRNA	51333-1_{1..1128}	"gi|392494086|ref|NR_052023.1| Homo sapiens eukaryotic translation initiation factor 6 (EIF6), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|392494086|ref|NR_052023.1| Homo sapiens eukaryotic translation initiation factor 6 (EIF6), transcript variant 8, non-coding RNA"	Chr20	 33866709	 33867836	-	3692	NR_052023.1	NA	NA	NA	NA	NA	inter
CUST_11235_PI429285431	0.91999274	A	0.9124992	A	1.00520763898221	0	lncRNA	12793-1_{1..3000}	lnc-RBL2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RBL2-1:3	chr16	 53418086	 53421085	+	lnc-RBL2-1	lnc-RBL2-1:3	XLOC_011728	linc-RBL2	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10"	NA	inter
CUST_2993_PI429285431	0.9135475	A	0.89975655	A	1.0096049927922	0	lncRNA	2972-1_{1..328}	"transcript_id ""ENST00000521298.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521298.2"" | genecode_v17"	chr8	  9037761	  9038088	-	ENSG00000253252.2	ENST00000521298.2	RP11-10A14.6	RP11-10A14.6-001	NA	NA	NA	inter
CUST_36935_PI429285431	7.5971704	P	7.7814784	P	0.880071107713361	0	lncRNA	38089-2_{3001..4303}	n345405|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_954|NULL|-1.3357300|-0.2913457	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345405|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_954|NULL|-1.3357300|-0.2913457	chr22	 17851274	 17852576	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60"	NA	inter
CUST_38795_PI429285431	0.9004643	A	0.89362437	A	1.00475233488854	0	lncRNA	39790-1_{1..3000}	n384489|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hxf.1||-1.2171600|-0.3781603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384489|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hxf.1||-1.2171600|-0.3781603	chr4	105389565	105392564	-	NA	NA	NA	NA	CXXC4	NA	chr4:105393330-105402866	inner
CUST_44727_PI429285431	13.074682	P	13.171289	P	0.935229926085681	0	lncRNA	49281-1_{1..1143}	"gi|311771779|ref|NR_037169.1| Homo sapiens uncharacterized LOC100507547 (LOC100507547), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|311771779|ref|NR_037169.1| Homo sapiens uncharacterized LOC100507547 (LOC100507547), transcript variant 1, non-coding RNA"	Chr6	 32120579	 32121721	-	100507547	NR_037169.1	NA	NA	NA	NA	NA	inter
CUST_49774_PI429285431	3.810215	P	2.708825	A	2.145613173277	0	lncRNA	53534-1_{1..834}	hg19_lincRNAsTranscripts_TCONS_l2_00025881 range=chr7:55838664-55841617 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025881 range=chr7:55838664-55841617 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 55838664	 55839497	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35629_PI429285431	7.2758393	P	7.400351	P	0.917314468379525	0	lncRNA	37044-1_{1..1058}	n342773|AB126079|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5276|NULL|0.7075720|-0.0854927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342773|AB126079|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5276|NULL|0.7075720|-0.0854927	chr11	 71276608	 71277665	+	NA	NA	NA	NA	KRTAP5-11	NA	chr11:71279598-71287666	inner
CUST_24375_PI429285431	2.4521987	A	0.9125289	A	2.90727954848639	0	lncRNA	25928-1_{1..443}	lnc-OSBP2-2:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OSBP2-2:13	chr22	 31371199	 31371641	+	lnc-OSBP2-2	lnc-OSBP2-2:13	ENSG00000253352.3	TUG1	MORC2	NA	chr22:31361199-31364187	inter
CUST_51192_PI429285431	1.9082514	A	1.7146617	A	1.14360568745078	0	lncRNA	54813-1_{1..551}	hg19_lincRNAsTranscripts_TCONS_l2_00008907 range=chr15:20433918-20448145 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008907 range=chr15:20433918-20448145 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 20433918	 20434468	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20208_PI429285431	3.7929428	P	4.0543995	P	0.834245150441382	0	lncRNA	21852-1_{1..411}	lnc-C10orf68-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf68-3:1	chr10	 33609226	 33609636	+	lnc-C10orf68-3	lnc-C10orf68-3:1	ENSG00000228832.1	RP11-90B22.2	NRP1	NA	chr10:33599226-33619590	inner
CUST_29227_PI429285431	3.0620484	P	3.4877071	P	0.744498733660376	0	lncRNA	30978-1_{1..3000}	n326752|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006890|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006890|-0.1963390|-0.2815025	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326752|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006890|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006890|-0.1963390|-0.2815025	chr1	   667055	   670054	-	NA	NA	NA	NA	LOC100287654	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80chr1:657055-659924"	NA	inter
CUST_32131_PI429285431	1.227596	A	0.9087064	A	1.24737011519869	0	lncRNA	33831-1_{1..1881}	n338698|AK057914|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1118|NULL|-1.3310700|-0.3977423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338698|AK057914|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1118|NULL|-1.3310700|-0.3977423	chr19	 44750630	 44752510	-	NA	NA	NA	NA	ZNF227	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-27.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00chr19:44740630-44741421"	NA	inter
CUST_42461_PI429285431	4.9838557	P	5.4141903	P	0.742089654692486	0	lncRNA	45200-1_{1..86}	ENST00000365237 ncrna:snoRNA chromosome:GRCh37:1:31421964:31422049:-1 gene:ENSG00000202107 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365237 ncrna:snoRNA chromosome:GRCh37:1:31421964:31422049:-1 gene:ENSG00000202107 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 31421964	 31422049	-	ENSG00000202107	ENST00000365237	NA	NA	PUM1	NA	chr1:31411964-31432049	inner
CUST_9500_PI429285431	3.6969383	P	3.8130832	P	0.922649819795616	0	lncRNA	11009-1_{1..2672}	lnc-CEBPB-7:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEBPB-7:4	chr20	 48929837	 48932508	+	lnc-CEBPB-7	lnc-CEBPB-7:4	XLOC_013560	linc-PTPN1-2	NA	NA	NA	inter
CUST_50336_PI429285431	2.161393	A	2.6736546	A	0.701122481146012	0	lncRNA	54052-1_{1..232}	hg19_lincRNAsTranscripts_TCONS_l2_00029082 range=chr9:132337708-132339861 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029082 range=chr9:132337708-132339861 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132337708	132337939	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007333	0.9192772	A	0.90502226	A	1.00992974746644	0	lncRNA	TCONS_00019602	NA	NA	NA	NA	XLOC_009404	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009404), lincRNA [TCONS_00019602]"	chr11:30709018-30708959	hs|11p14.1	Agilent_HUMAN_G3V2	TCONS_00019602	TCONS_00019602	chr11	 30708959	 30709018	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16250_PI429285431	0.9173297	A	0.90731734	A	1.0069641769831	0	lncRNA	17955-1_{1..3000}	lnc-SLC39A11-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC39A11-3:4	chr17	 70033431	 70036430	-	lnc-SLC39A11-3	lnc-SLC39A11-3:4	XLOC_012564	linc-ABCA5-7	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90"	NA	inter
CUST_47007_PI429285431	2.300365	A	2.6963534	A	0.759968538708771	0	lncRNA	51104-1_{1..3000}	"gi|334085283|ref|NR_038325.1| Homo sapiens uncharacterized LOC100505776 (LOC100505776), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|334085283|ref|NR_038325.1| Homo sapiens uncharacterized LOC100505776 (LOC100505776), transcript variant 1, non-coding RNA"	Chr18	 69187200	 69190199	-	100505776	NR_038325.1	NA	NA	NA	NA	NA	inter
CUST_21711_PI429285431	3.0239656	P	2.2113855	A	1.75634967211304	0	lncRNA	23321-1_{1..281}	lnc-RP11-324D17.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-324D17.1.1-2:1	chr16	 54088440	 54088720	-	lnc-RP11-324D17.1.1-2	lnc-RP11-324D17.1.1-2:1	ENSG00000261049.2	RP11-357N13.1	FTO	NA	chr16:54078440-54098495	inner
CUST_25385_PI429285431	5.8274226	P	5.8579764	P	0.979044404654587	0	lncRNA	26916-1_{1..575}	lnc-C17orf48-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf48-2:6	chr17	 10671182	 10671756	+	lnc-C17orf48-2	lnc-C17orf48-2:6	ENSG00000263400.1	CTC-297N7.5	NA	"hg19_refFlat_TMEM220:range=chr17:10618770-106331685'pad=0,hg19_refFlat_TMEM220:range=chr17:10618770-106331685'pad=0 3'pad=0 strand=- repeatMasking=none,-99.20"	NA	inter
CUST_18812_PI429285431	4.2716193	P	3.3379865	P	1.91007965045566	0	lncRNA	20506-2_{3001..4600}	lnc-PADI1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PADI1-1:2	chr1	 17523556	 17525155	+	lnc-PADI1-1	lnc-PADI1-1:2	ENSG00000204362	RP11-380J14.1	PADI1	NA	chr1:17531621-17534112	inter
LNCA_21_P0007412	6.90756	P	7.759889	P	0.553889847484691	0	lncRNA	TCONS_00019784	NA	NA	NA	NA	XLOC_009582	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009582), lincRNA [TCONS_00019784]"	NA	NA	Agilent_HUMAN_G3V2	TCONS_00019784	TCONS_00019784	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28995_PI429285431	0.90811634	A	0.8958951	A	1.00850709949872	0	lncRNA	30719-1_{1..704}	n326479|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033532|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033532|-0.4334420|-0.2689575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326479|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033532|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033532|-0.4334420|-0.2689575	chr1	113164434	113165137	-	NA	NA	NA	NA	ST7L	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-27.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-27.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80chr1:113154434-113162040"	NA	inner
CUST_30070_PI429285431	5.0554276	P	5.333838	P	0.82449897200078	0	lncRNA	31839-1_{1..375}	n334586|U71216|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221150|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221150|1.2316100|-0.1911193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334586|U71216|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221150|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221150|1.2316100|-0.1911193	chr22	 25595826	 25596200	+	NA	NA	NA	NA	KIAA1671	NA	chr22:25585826-25593415	inner
CUST_1912_PI429285431	0.91279787	A	0.90845734	A	1.00301315658958	0	lncRNA	1903-1_{1..405}	"transcript_id ""ENST00000507220.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507220.1"" | genecode_v17"	chr4	139198269	139198673	-	ENSG00000249091.1	ENST00000507220.1	RP11-733C7.1	RP11-733C7.1-001	NA	NA	NA	inter
CUST_5115_PI429285431	0.8934805	A	0.8882022	M	1.00366533975162	0	lncRNA	5055-1_{1..518}	"transcript_id ""ENST00000557171.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557171.1"" | genecode_v17"	chr15	 26147580	 26148097	+	ENSG00000206187.3	ENST00000557171.1	RP11-1084I9.1	RP11-1084I9.1-002	NA	NA	NA	inter
CUST_23302_PI429285431	1.6470219	A	1.679197	A	0.977944773017301	0	lncRNA	24873-1_{1..312}	lnc-AC022532.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC022532.1-1:1	chr10	 72316338	 72316649	+	lnc-AC022532.1-1	lnc-AC022532.1-1:1	ENSG00000227918.1	RP11-710A11.2	KIAA1274	NA	chr10:72306338-72326552	inner
CUST_29096_PI429285431	7.2178717	P	7.450093	P	0.851323110325921	0	lncRNA	30829-1_{1..772}	n326592|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023102|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023102|-1.2440300|-0.3060885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326592|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023102|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023102|-1.2440300|-0.3060885	chr1	 59370773	 59371544	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35672_PI429285431	0.91575205	A	0.9140365	A	1.0011898359394	0	lncRNA	37092-3_{6001..6917}	n342831|BX649107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5334|NULL|-0.8883230|-0.2424715	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342831|BX649107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5334|NULL|-0.8883230|-0.2424715	chr13	112973780	112974696	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28899_PI429285431	2.960255	A	1.4218047	A	2.90482308383614	0	lncRNA	30615-1_{1..491}	n326322|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098153|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098153|-0.8556830|-0.2329539	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326322|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098153|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098153|-0.8556830|-0.2329539	chr1	175587344	175587834	+	NA	NA	NA	NA	TNR	NA	chr1:175577344-175612031	inner
CUST_25252_PI429285431	5.006873	P	4.985912	P	1.01463511784277	0	lncRNA	26782-1_{1..1124}	lnc-TELO2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TELO2-3:2	chr16	  1495911	  1497034	+	lnc-TELO2-3	lnc-TELO2-3:2	ENSG00000261641.1	LA16c-390E6.5	CLCN7	NA	chr16:1494935-1506520	inner
CUST_25936_PI429285431	5.810587	P	6.0861745	P	0.826113836292209	0	lncRNA	27455-1_{1..204}	lnc-MUC20-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MUC20-4:2	chr3	195640020	195640223	+	lnc-MUC20-4	lnc-MUC20-4:2	ENSG00000226155.1	AC124944.3	TNK2	NA	chr3:195630020-195635880	inter
CUST_16722_PI429285431	4.3005786	P	1.1992952	A	8.58181856348834	0	lncRNA	18429-1_{1..1143}	lnc-TCF4-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF4-5:1	chr18	 53857995	 53859137	-	lnc-TCF4-5	lnc-TCF4-5:1	XLOC_012852	linc-TCF4-4	NA	NA	NA	inter
CUST_679_PI429285431	4.1376405	P	4.599963	P	0.725816872737161	0	lncRNA	672-1_{1..834}	"transcript_id ""ENST00000586893.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586893.1"" | genecode_v17"	chr2	  6757444	  6758277	-	ENSG00000236172.2	ENST00000586893.1	AC097517.2	AC097517.2-029	NA	NA	NA	inter
CUST_9377_PI429285431	0.9151698	A	0.92081565	A	0.996094242380988	0	lncRNA	10880-1_{1..748}	lnc-CHL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHL1-2:1	chr3	    65642	    66389	+	lnc-CHL1-2	lnc-CHL1-2:1	XLOC_002562	linc-CHL1-2	NA	NA	NA	inter
CUST_18690_PI429285431	0.91529727	A	1.8931093	A	0.507749201213175	0	lncRNA	20389-1_{1..445}	lnc-SLC39A11-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC39A11-2:9	chr17	 70106531	 70106975	-	lnc-SLC39A11-2	lnc-SLC39A11-2:9	ENSG00000234899	AC005152.2	NA	NA	NA	inter
CUST_1942_PI429285431	1.3358384	A	1.9408478	A	0.657467096306817	0	lncRNA	1934-1_{1..358}	"transcript_id ""ENST00000505586.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505586.1"" | genecode_v17"	chr4	150877360	150877717	+	ENSG00000250704.1	ENST00000505586.1	RP11-423J7.1	RP11-423J7.1-001	NA	NA	NA	inter
CUST_45328_PI429285431	0.916647	A	0.90757495	A	1.00630807853059	0	lncRNA	49768-3_{6001..6144}	"gi|213512396|ref|NR_024481.1| Homo sapiens family with sequence similarity 205, member B (FAM205B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|213512396|ref|NR_024481.1| Homo sapiens family with sequence similarity 205, member B (FAM205B), non-coding RNA"	Chr9	 34836264	 34836407	-	389715	NR_024481.1	NA	NA	NA	NA	NA	inter
CUST_6527_PI429285431	0.9092086	A	0.89922035	A	1.00694734896141	0	lncRNA	6470-1_{1..599}	"transcript_id ""ENST00000595395.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595395.1"" | genecode_v17"	chr19	 42055888	 42056486	+	ENSG00000268027.1	ENST00000595395.1	AC006129.2	AC006129.2-002	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30"	NA	inter
CUST_4428_PI429285431	0.90310127	A	0.8987917	A	1.00299163232198	0	lncRNA	4378-1_{1..1053}	"transcript_id ""ENST00000547006.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547006.1"" | genecode_v17"	chr12	117537286	117538338	+	ENSG00000258285.1	ENST00000547006.1	RP11-103B5.2	RP11-103B5.2-001	FBXO21	NA	chr12:117581585-117589896	inter
LNCA_21_P0012169	2.2492065	A	3.0985892	P	0.55502216798315	0	lncRNA	TCONS_l2_00016969	NA	NA	NA	NA	XLOC_l2_008979	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008979), lincRNA [TCONS_l2_00016969]"	chr21:15032417-15032476	hs|21q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00016969	TCONS_l2_00016969	chr21	 15032417	 15032476	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25054_PI429285431	1.0635629	A	0.93679374	A	1.09184582978047	0	lncRNA	26592-1_{1..686}	lnc-GTF2IRD2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTF2IRD2-1:2	chr7	 74143043	 74143728	-	lnc-GTF2IRD2-1	lnc-GTF2IRD2-1:2	ENSG00000232729.2	AC083884.8	GTF2I	"hg19_refFlat_GTF2IRD2:range=chr7:74211001-742515005'pad=0,hg19_refFlat_GTF2IRD2:range=chr7:74211001-742515005'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_GTF2IRD2B:range=chr7:74524757-745651035'pad=0,hg19_refFlat_GTF2IRD2B:range=chr7:74524757-745651035'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_GTF2I:range=chr7:74103463-741731685'pad=0,hg19_refFlat_GTF2I:range=chr7:74103463-741731685'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60chr7:74133043-74153103"	NA	inner
CUST_20968_PI429285431	3.222408	P	2.949626	A	1.20813527300485	0	lncRNA	22598-1_{1..444}	lnc-RFPL3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RFPL3-1:2	chr22	 32781443	 32781886	+	lnc-RFPL3-1	lnc-RFPL3-1:2	ENSG00000241954.1	RP1-149A16.17	C22orf28	NA	chr22:32783562-32791618	inter
CUST_29183_PI429285431	1.8146235	A	2.6129112	A	0.575031263400992	0	lncRNA	30928-1_{1..342}	n326696|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007047|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007047|-0.2002640|-0.1620319	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326696|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007047|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007047|-0.2002640|-0.1620319	chr1	 16719775	 16720116	+	NA	NA	NA	NA	SPATA21	NA	chr1:16725138-16730890	inner
CUST_38557_PI429285431	0.9260765	A	0.9294961	A	0.997632520811287	0	lncRNA	39567-1_{1..1907}	n383432|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002nqc.2||-0.4516410|-0.3550800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n383432|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002nqc.2||-0.4516410|-0.3550800	chr19	 21676921	 21678827	+	NA	NA	NA	NA	ZNF429	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10chr19:21688437-21692695"	NA	inter
LNCA_21_P0005026	0.98466814	A	0.9279528	A	1.04009502379756	0	lncRNA	XR_108647	XR_108647	XR_108647	NA	NA	LOC100505711	uncharacterized LOC100505711	NA	THC2674101	NA	"PREDICTED: Homo sapiens hypothetical LOC100505711 (LOC100505711), miscRNA [XR_108647]"	chr6:41349234-41349175	hs|6p21.1	Agilent_HUMAN_G3V2	XR_108647	XR_108647	chr6	 41349175	 41349234	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22416_PI429285431	0.9246987	A	0.90871286	A	1.01114215647866	0	lncRNA	24005-1_{1..1010}	lnc-C1QTNF8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1QTNF8-1:1	chr16	  1127722	  1128731	-	lnc-C1QTNF8-1	lnc-C1QTNF8-1:1	ENSG00000261713.1	RP11-161M6.4	SSTR5	NA	chr16:1122756-1131454	inner
CUST_24020_PI429285431	1.3563437	A	1.5019331	A	0.904009977015389	0	lncRNA	25573-2_{3001..4571}	lnc-CDK5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK5-2:1	chr7	150723961	150725531	-	lnc-CDK5-2	lnc-CDK5-2:1	ENSG00000181652.11	ATG9B	ABCB8	"hg19_refFlat_NOS3:range=chr7:150690892-1507112575'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507112575'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.60chr7:150725510-150731586"	NA	inter
CUST_20328_PI429285431	1.6141558	A	2.224948	A	0.654837024844677	0	lncRNA	21971-1_{1..2673}	lnc-AC007952.2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC007952.2-1:1	chr17	 19044330	 19047002	-	lnc-AC007952.2-1	lnc-AC007952.2-1:1	ENSG00000262319.1	CTC-457L16.2	GRAPL	NA	chr17:19034330-19057002	inner
CUST_5514_PI429285431	0.9132671	A	1.0819345	A	0.889664073722129	0	lncRNA	5445-1_{1..572}	"transcript_id ""ENST00000567902.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567902.1"" | genecode_v17"	chr16	 34728125	 34728696	-	ENSG00000261445.1	ENST00000567902.1	RP11-80F22.4	RP11-80F22.4-001	NA	NA	NA	inter
CUST_49849_PI429285431	0.9218284	A	1.0641632	A	0.906051650379195	0	lncRNA	53602-6_{15001..15664}	hg19_lincRNAsTranscripts_TCONS_l2_00026657 range=chr7:65982683-66057999 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026657 range=chr7:65982683-66057999 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 65997683	 65998346	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-59.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_GTF2IRD1:range=chr7:73922411-740167605'pad=0,hg19_refFlat_GTF2IRD1:range=chr7:73922411-740167605'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.01;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.90;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_12334_PI429285431	0.947261	A	1.0029348	A	0.962144975487351	0	lncRNA	13946-1_{1..1397}	lnc-APOBEC3F-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APOBEC3F-1:1	chr22	 39464714	 39466110	+	lnc-APOBEC3F-1	lnc-APOBEC3F-1:1	XLOC_014244	linc-APOBEC3G	APOBEC3G	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30chr22:39473010-39475987"	NA	inter
CUST_10321_PI429285431	0.9681748	A	0.9108572	A	1.04052930712003	0	lncRNA	11849-1_{1..300}	lnc-AL137145.1-2:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL137145.1-2:14	chr10	  6657332	  6657631	+	lnc-AL137145.1-2	lnc-AL137145.1-2:14	XLOC_008370	linc-ITIH2-10	NA	NA	NA	inter
CUST_3988_PI429285431	0.92148733	A	0.9122472	A	1.00642532445589	0	lncRNA	3949-1_{1..580}	"transcript_id ""ENST00000504911.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504911.1"" | genecode_v17"	chr11	 66326337	 66326916	-	ENSG00000250105.1	ENST00000504911.1	CTD-3074O7.2	CTD-3074O7.2-001	ACTN3	"hg19_refFlat_ACTN3:range=chr11:66313982-663306645'pad=0,hg19_refFlat_ACTN3:range=chr11:66313982-663306645'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70;hg19_refFlat_ACTN3:range=chr11:66314409-663306645'pad=0,hg19_refFlat_ACTN3:range=chr11:66314409-663306645'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70chr11:66316337-66330797"	NA	inter
CUST_22498_PI429285431	0.9133546	A	0.9061957	A	1.0049745033125	0	lncRNA	24085-1_{1..421}	lnc-RP11-1085N6.3.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-1085N6.3.1-1:2	chr14	 57114432	 57114852	-	lnc-RP11-1085N6.3.1-1	lnc-RP11-1085N6.3.1-1:2	ENSG00000258428.1	RP11-1085N6.2	C14orf101	NA	chr14:57104432-57116233	inner
CUST_8314_PI429285431	3.812389	P	4.203814	P	0.762376207004369	0	lncRNA	9898-1_{1..2293}	lnc-GSTO2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GSTO2-2:1	chr10	106098041	106100333	+	lnc-GSTO2-2	lnc-GSTO2-2:1	ENSG00000246977	ENST00000499336	ITPRIP	"hg19_refFlat_ITPRIP:range=chr10:106074166-1060758095'pad=0,hg19_refFlat_ITPRIP:range=chr10:106074166-1060758095'pad=0 3'pad=0 strand=- repeatMasking=none,-106.30chr10:106088041-106093663"	NA	inter
LNCA_21_P0002006	2.6932712	A	2.018598	A	1.59623515177509	0	lncRNA	ENST00000414795	NA	NA	NA	NA	XLOC_001966	NA	ENST00000414795	THC2690286	NA	"BROAD Institute lincRNA (XLOC_001966), lincRNA [TCONS_00004118]"	chr2:6970158-6970099	hs|2p25.2	Agilent_HUMAN_G3V2	ENST00000414795	ENST00000414795	chr2	  6970099	  6970158	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9724_PI429285431	5.807377	P	5.82127	P	0.990416325167418	0	lncRNA	11240-1_{1..295}	lnc-CCHCR1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCHCR1-1:2	chr6	 31148224	 31148518	-	lnc-CCHCR1-1	lnc-CCHCR1-1:2	XLOC_005677	linc-POU5F1-1	POU5F1	NA	chr6:31138224-31138451	inter
CUST_21797_PI429285431	0.9258234	A	0.9154048	A	1.00724776201996	0	lncRNA	23407-1_{1..1200}	lnc-IL18R1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-IL18R1-1:1	chr2	103050935	103052134	+	lnc-IL18R1-1	lnc-IL18R1-1:1	ENSG00000236525.1	AC007278.2	IL18RAP	NA	chr2:103040935-103061800	inner
CUST_37005_PI429285431	3.3236325	P	3.7651896	P	0.736339448834518	0	lncRNA	38146-1_{1..699}	n345463|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1012|NULL|-1.5248300|-0.2760139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345463|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1012|NULL|-1.5248300|-0.2760139	chr1	150517407	150518105	-	NA	NA	NA	NA	ADAMTSL4	"hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-21.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr1:150521898-150528106"	NA	inter
CUST_32588_PI429285431	1.6765436	A	3.3329349	P	0.317231667568608	0	lncRNA	34250-2_{3001..3149}	n339208|AK023784|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1640|NULL|-0.7793830|-0.2186507	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339208|AK023784|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1640|NULL|-0.7793830|-0.2186507	chr16	 50674503	 50674651	+	NA	NA	NA	NA	NKD1	NA	chr16:50661503-50674771	inner
CUST_6143_PI429285431	0.9092986	A	0.92334974	A	0.9903077673299	0	lncRNA	6069-1_{1..433}	"transcript_id ""ENST00000580937.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580937.1"" | genecode_v17"	chr18	 29076608	 29077040	-	ENSG00000266521.1	ENST00000580937.1	RP11-650P15.1	RP11-650P15.1-001	DSG2	NA	chr18:29078027-29087158	inter
CUST_35459_PI429285431	3.2486238	P	4.40774	P	0.447786767188818	0	lncRNA	36862-1_{1..237}	n342532|U17614|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5028|NULL|-1.1435000|-0.4436598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342532|U17614|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5028|NULL|-1.1435000|-0.4436598	chr21	 39050979	 39051215	+	NA	NA	NA	NA	KCNJ6	NA	chr21:39040979-39061214	inner
CUST_13654_PI429285431	0.9024889	A	0.89736164	A	1.00356026856644	0	lncRNA	15293-1_{1..675}	lnc-FAM153C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM153C-1:1	chr5	177490173	177490847	+	lnc-FAM153C-1	lnc-FAM153C-1:1	XLOC_004671	linc-N4BP3	NA	"hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.46;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-32.50;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00"	NA	inter
LNCA_21_P0011557	1.5214907	A	2.2390947	A	0.608106535588371	0	lncRNA	TCONS_l2_00010999	NA	NA	NA	NA	XLOC_l2_005915	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005915), lincRNA [TCONS_l2_00010999]"	chr17:76482204-76482263	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_l2_00010999	TCONS_l2_00010999	chr17	 76482204	 76482263	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5032_PI429285431	1.0862033	A	0.9203677	A	1.12181563854437	0	lncRNA	4972-1_{1..588}	"transcript_id ""ENST00000448840.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448840.2"" | genecode_v17"	chr14	101540233	101540820	-	ENSG00000230805.2	ENST00000448840.2	AL132709.1	AL132709.1-001	NA	NA	NA	inter
CUST_5018_PI429285431	5.103432	P	5.2553315	P	0.900064627274194	0	lncRNA	4958-1_{1..439}	"transcript_id ""ENST00000553421.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553421.1"" | genecode_v17"	chr14	101379721	101380159	+	ENSG00000258399.1	ENST00000553421.1	MEG8	MEG8-006	NA	NA	NA	inter
CUST_5192_PI429285431	0.93077624	A	1.0068957	A	0.948605764141692	0	lncRNA	5133-1_{1..839}	"transcript_id ""ENST00000561934.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561934.1"" | genecode_v17"	chr15	 56700681	 56701519	-	ENSG00000261823.1	ENST00000561934.1	RP11-48G14.1	RP11-48G14.1-001	TEX9	NA	chr15:56690681-56712384	inner
CUST_49542_PI429285431	0.9125538	A	0.9164329	A	0.997314824322647	0	lncRNA	53334-1_{1..521}	hg19_lincRNAsTranscripts_TCONS_l2_00025400 range=chr6:52804524-52810263 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025400 range=chr6:52804524-52810263 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 52804524	 52805044	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8343_PI429285431	3.1843617	A	3.6316195	P	0.73343560031378	0	lncRNA	9924-1_{1..3000}	lnc-SLC25A16-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A16-3:1	chr10	 70550128	 70553127	-	lnc-SLC25A16-3	lnc-SLC25A16-3:1	ENSG00000247499	ENST00000501160	CCAR1	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CCAR1:range=chr10:70482262-705510235'pad=0,hg19_refFlat_CCAR1:range=chr10:70482262-705510235'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60chr10:70540128-70551309"	NA	inner
CUST_12552_PI429285431	1.036107	A	0.9100649	A	1.09129572223237	0	lncRNA	14163-1_{1..238}	lnc-COIL-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COIL-2:6	chr17	 55161965	 55162202	-	lnc-COIL-2	lnc-COIL-2:6	XLOC_012530	linc-COIL-2	AKAP1	NA	chr17:55162553-55172000	inter
CUST_4794_PI429285431	1.1235938	A	2.1096349	A	0.50486126592947	0	lncRNA	4738-1_{1..645}	"transcript_id ""ENST00000554319.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554319.1"" | genecode_v17"	chr14	 46037198	 46037842	+	ENSG00000258845.1	ENST00000554319.1	RP11-945F5.1	RP11-945F5.1-001	NA	NA	NA	inter
CUST_48552_PI429285431	5.795	P	5.7596474	P	1.02480725910948	0	lncRNA	52401-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00014889 range=chr2:130745749-130810383 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014889 range=chr2:130745749-130810383 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	130745749	130748748	-	NA	NA	NA	NA	RAB6C	NA	chr2:130737235-130740311	inter
CUST_49191_PI429285431	1.6434249	A	2.3722804	A	0.603382391474021	0	lncRNA	53014-2_{3001..3948}	hg19_lincRNAsTranscripts_TCONS_l2_00020804 range=chr4:147143417-147152283 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020804 range=chr4:147143417-147152283 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	147146417	147147364	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1655_PI429285431	2.801527	A	3.4983976	P	0.6169089149859	0	lncRNA	1640-1_{1..570}	"transcript_id ""ENST00000597662.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597662.1"" | genecode_v17"	chr3	195435025	195435594	+	ENSG00000242086.3	ENST00000597662.1	AC069513.3	AC069513.3-021	MUC20	NA	chr3:195447753-195464540	inner
CUST_139_PI429201921	2.9055338	A	0.924873	A	3.94673813504502	0	lncRNA	125-1_{1..3000}	TC0Y000340.hg.1	TCONS_l2_00030950-XLOC_l2_015963 // Broad TUCP // linc-BPY2B-5 chrY:-:27670207-27673951 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:27670207-27673951	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00030950-XLOC_l2_015963	linc-BPY2B-5	chrY	 27670207	 27673951	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004995	6.7623754	P	6.9000616	P	0.908975805898618	0	lncRNA	TCONS_00012060	NA	NA	NA	NA	XLOC_005590	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005590), lincRNA [TCONS_00012060]"	chr6:4399978-4399919	hs|6p25.1	Agilent_HUMAN_G3V2	TCONS_00012060	TCONS_00012060	chr6	  4399919	  4399978	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10170_PI429285431	0.9153248	A	0.9057987	A	1.0066248371514	0	lncRNA	11695-1_{1..749}	lnc-ATHL1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATHL1-1:2	chr11	   288619	   289367	+	lnc-ATHL1-1	lnc-ATHL1-1:2	XLOC_009013	linc-ATHL1	ATHL1	NA	chr11:289138-295688	inter
CUST_35476_PI429285431	5.0631227	P	5.3078437	P	0.843978995812604	0	lncRNA	36885-1_{1..720}	n342575|AF073924|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5074|NULL|4.7619800|-0.0824939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342575|AF073924|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5074|NULL|4.7619800|-0.0824939	chr4	  9756691	  9757410	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28137_PI429285431	0.92738557	A	1.7669592	A	0.558808693370828	0	lncRNA	29763-1_{1..474}	n325414|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323740|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323740|-1.1370900|-0.2332789	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325414|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323740|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323740|-1.1370900|-0.2332789	chr2	 16130970	 16131443	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32044_PI429285431	2.7490473	A	3.9635553	P	0.430920010768108	0	lncRNA	33758-1_{1..666}	n338605|AF087985|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1011|NULL|-1.2379600|-0.4408649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n338605|AF087985|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1011|NULL|-1.2379600|-0.4408649	chr19	 40526291	 40526956	+	NA	NA	NA	NA	ZNF780B	NA	chr19:40529284-40536948	inter
CUST_5991_PI429285431	3.7936559	P	4.7748837	P	0.506548460305833	0	lncRNA	5917-1_{1..1767}	"transcript_id ""ENST00000585798.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585798.1"" | genecode_v17"	chr17	 75559450	 75561216	-	ENSG00000267466.1	ENST00000585798.1	RP11-13K12.5	RP11-13K12.5-001	LOC100652922	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30chr17:75549450-75550976"	NA	inter
CUST_38507_PI429285431	9.69884	P	9.564879	P	1.09730227409118	0	lncRNA	39519-2_{3001..4838}	n383068|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gqr.1||3.2065800|-0.1278350	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383068|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gqr.1||3.2065800|-0.1278350	chr17	 16829228	 16831065	-	NA	NA	NA	NA	TNFRSF13B	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-58.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80chr17:16842398-16848153"	NA	inter
CUST_4009_PI429285431	0.9178276	A	1.507808	A	0.664351932662859	0	lncRNA	3970-1_{1..347}	"transcript_id ""ENST00000532530.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532530.1"" | genecode_v17"	chr11	 71412314	 71412660	-	ENSG00000254972.1	ENST00000532530.1	RP11-167J8.3	RP11-167J8.3-001	FAM86C1	NA	chr11:71402314-71426450	inter
CUST_20008_PI429285431	10.146552	P	9.9288225	P	1.16290198127264	0	lncRNA	21661-1_{1..2108}	lnc-CHMP4A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHMP4A-1:2	chr14	 24685125	 24687232	-	lnc-CHMP4A-1	lnc-CHMP4A-1:2	ENSG00000260669.2	AL136419.6	NEDD8	NA	chr14:24686057-24695180	inner
LNCA_33_P3404281	2.86448	A	2.8717842	A	0.994949909167254	0	lncRNA	XR_108997	XR_108997	XR_108997	    51145	Hs.104671	LOC51145	erythrocyte transmembrane protein	NA	THC2488498	GO:0016021	"PREDICTED: Homo sapiens erythrocyte transmembrane protein (LOC51145), miscRNA [XR_108997]"	chr9:128507004-128506945	hs|9q33.3	Agilent_HUMAN_G3V2	XR_108997	XR_108997	chr9	128506945	128507004	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8734_PI429285431	3.83708	P	4.0478773	P	0.864059580049783	0	lncRNA	10277-1_{1..1422}	lnc-BTNL8-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BTNL8-3:1	chr5	180257672	180259093	+	lnc-BTNL8-3	lnc-BTNL8-3:1	ENSG00000249705	ENST00000545462	NA	NA	NA	inter
CUST_30888_PI429285431	1.7101356	A	2.3013325	A	0.66379197822825	0	lncRNA	32676-1_{1..217}	n336901|AY927509|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332671|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332671|-1.0158700|-0.0413928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336901|AY927509|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332671|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332671|-1.0158700|-0.0413928	chr14	 64628927	 64629143	-	NA	NA	NA	NA	SYNE2	"hg19_refFlat_SYNE2:range=chr14:64375867-646922445'pad=0,hg19_refFlat_SYNE2:range=chr14:64375867-646922445'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10chr14:64618927-64639144"	NA	inner
CUST_2641_PI429285431	4.8453126	P	5.3070865	P	0.726092924738007	0	lncRNA	2628-1_{1..777}	"transcript_id ""ENST00000447848.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447848.1"" | genecode_v17"	chr6	136128286	136129062	-	ENSG00000236378.1	ENST00000447848.1	RP11-394G3.2	RP11-394G3.2-001	NA	NA	NA	inter
CUST_31526_PI429285431	0.9082638	A	0.9003608	A	1.0054929735276	0	lncRNA	33283-2_{3001..3773}	n338012|AK127470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|399|NULL|16.6599000|-0.1252656	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338012|AK127470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|399|NULL|16.6599000|-0.1252656	chr1	 75040868	 75041640	-	NA	NA	NA	NA	C1orf173	NA	chr1:75033795-75139422	inner
CUST_16466_PI429285431	0.90926635	A	2.186807	A	0.412498091618202	0	lncRNA	18164-1_{1..637}	lnc-EIF2B5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2B5-2:1	chr3	184477408	184478044	+	lnc-EIF2B5-2	lnc-EIF2B5-2:1	XLOC_002952	linc-VPS8-2	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90"	NA	inter
CUST_39334_PI429285431	0.9120772	A	0.9029294	A	1.006360917028	0	lncRNA	40301-1_{1..1121}	n386393|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010izt.2||1.4498100|-0.2437691	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386393|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010izt.2||1.4498100|-0.2437691	chr5	 74907300	 74908420	+	NA	NA	NA	NA	POC5	NA	chr5:74970023-74976977	inner
CUST_36360_PI429285431	0.9973295	A	1.2641128	A	0.831170698207632	0	lncRNA	37582-2_{3001..3646}	n344879|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_428|NULL|-1.2914100|-0.2769935	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344879|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_428|NULL|-1.2914100|-0.2769935	chr6	143863212	143863857	-	NA	NA	NA	NA	PHACTR2	NA	chr6:143929317-143931694	inter
CUST_16934_PI429285431	1.563391	A	0.8945887	A	1.58975263490411	0	lncRNA	18646-1_{1..295}	lnc-KCNH1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNH1-2:1	chr1	211432078	211432372	-	lnc-KCNH1-2	lnc-KCNH1-2:1	XLOC_001189	linc-KCNH1	RCOR3	NA	chr1:211432708-211442110	inter
CUST_16066_PI429285431	5.28753	P	4.786092	P	1.41562387632879	0	lncRNA	17769-1_{1..230}	lnc-MYC-2:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYC-2:18	chr8	129007129	129007358	+	lnc-MYC-2	lnc-MYC-2:18	XLOC_006924	linc-EFR3A-5	NA	NA	NA	inter
CUST_39831_PI429285431	4.807962	P	3.9422066	P	1.82229357650346	0	lncRNA	40738-1_{1..3000}	n406427|NR_016021|lncRNA|Homosapiens||RefGeneNoncode|NR_016021||5.3292200|-0.3526673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406427|NR_016021|lncRNA|Homosapiens||RefGeneNoncode|NR_016021||5.3292200|-0.3526673	chr11	124492741	124495740	+	NA	NA	NA	NA	SIAE	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-55.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.12;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10chr11:124505685-124515822"	NA	inner
CUST_20809_PI429285431	4.7354736	P	4.999139	P	0.832968936504882	0	lncRNA	22440-1_{1..423}	lnc-IFT46-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IFT46-1:5	chr11	118401219	118401641	-	lnc-IFT46-1	lnc-IFT46-1:5	ENSG00000255435.2	RP11-770J1.3	MLL	"hg19_refFlat_TTC36:range=chr11:118398210-1184016315'pad=0,hg19_refFlat_TTC36:range=chr11:118398210-1184016315'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_MLL:range=chr11:118307228-1183928875'pad=0,hg19_refFlat_MLL:range=chr11:118307228-1183928875'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80chr11:118391219-118397539"	NA	inner
CUST_14513_PI429285431	1.3308592	A	1.2575455	A	1.05213052988023	0	lncRNA	16179-1_{1..3000}	lnc-OXCT1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OXCT1-1:10	chr5	 42168565	 42171564	-	lnc-OXCT1-1	lnc-OXCT1-1:10	XLOC_004800	linc-OXCT1-1	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70"	NA	inter
CUST_6110_PI429285431	2.8510313	A	3.4047947	P	0.681240730701286	0	lncRNA	6036-1_{1..1788}	"transcript_id ""ENST00000583490.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000583490.1"" | genecode_v17"	chr18	 19746859	 19748646	-	ENSG00000266010.1	ENST00000583490.1	RP11-627G18.3	RP11-627G18.3-001	GATA6	NA	chr18:19749416-19758929	inter
CUST_10270_PI429285431	0.9073269	A	1.0706061	A	0.892993017643826	0	lncRNA	11795-1_{1..312}	lnc-SLC2A13-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC2A13-3:3	chr12	 40814022	 40814333	-	lnc-SLC2A13-3	lnc-SLC2A13-3:3	XLOC_010054	linc-SLC2A13-1	LOC100652946	NA	chr12:40804022-40824118	inter
CUST_35107_PI429285431	0.9220273	A	0.9090028	A	1.00906876981191	0	lncRNA	36514-1_{1..3000}	n342077|AK124105|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4558|NULL|0.9387890|-0.3534307	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342077|AK124105|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4558|NULL|0.9387890|-0.3534307	chr6	 84563308	 84566307	+	NA	NA	NA	NA	CYB5R4	NA	chr6:84569370-84577232	inner
CUST_24622_PI429285431	0.89373934	A	0.89512897	A	0.99903724562914	0	lncRNA	26171-1_{1..390}	lnc-SLC25A27-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A27-1:1	chr6	 46575722	 46576111	+	lnc-SLC25A27-1	lnc-SLC25A27-1:1	ENSG00000228402.1	RP3-347E1.2	CYP39A1	NA	chr6:46565722-46585916	inner
CUST_13676_PI429285431	2.111823	A	2.596657	A	0.714579286370968	0	lncRNA	15313-1_{1..206}	lnc-AC010872.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC010872.2.1-1:1	chr2	 21319248	 21319453	+	lnc-AC010872.2.1-1	lnc-AC010872.2.1-1:1	XLOC_001387	linc-KLHL29-8	NA	NA	NA	inter
CUST_44344_PI429285431	0.9093682	A	0.8997473	A	1.00669098499778	0	lncRNA	48969-1_{1..740}	"gi|354623064|ref|NR_045414.1| Homo sapiens HTT antisense RNA 1 (head to head) (HTT-AS1), antisense RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|354623064|ref|NR_045414.1| Homo sapiens HTT antisense RNA 1 (head to head) (HTT-AS1), antisense RNA"	NA	NA	NA	NA	NA	NR_045414.1	NA	NA	NA	NA	NA	Unknown
CUST_3054_PI429285431	0.9074998	A	1.1206708	A	0.862639091451792	0	lncRNA	3033-1_{1..1496}	"transcript_id ""ENST00000517356.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517356.1"" | genecode_v17"	chr8	 29672520	 29674015	-	ENSG00000248964.2	ENST00000517356.1	RP11-94H18.1	RP11-94H18.1-002	NA	NA	NA	inter
CUST_45877_PI429285431	0.91654515	A	0.9005054	A	1.01117994110437	0	lncRNA	50201-1_{1..3000}	"gi|219842349|ref|NR_026571.1| Homo sapiens NADPH oxidase 4 (NOX4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219842349|ref|NR_026571.1| Homo sapiens NADPH oxidase 4 (NOX4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_026571.1	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	Unknown
CUST_13978_PI429285431	3.4467974	P	4.35833	P	0.531620041944759	0	lncRNA	15623-1_{1..627}	lnc-TCF12-1:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF12-1:15	chr15	 57599740	 57600366	+	lnc-TCF12-1	lnc-TCF12-1:15	XLOC_011264	linc-CGNL1-2	NA	NA	NA	inter
CUST_18729_PI429285431	3.4142067	A	2.6973808	A	1.64356202261217	0	lncRNA	20427-1_{1..573}	lnc-FAM70A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM70A-1:1	chrX	119378619	119379191	-	lnc-FAM70A-1	lnc-FAM70A-1:1	ENSG00000233382	NKAPP1	ZBTB33	NA	chrX:119384607-119389122	inter
CUST_32520_PI429285431	4.0766006	P	4.7377567	P	0.632371344721826	0	lncRNA	34186-2_{3001..4312}	n339124|AK126661|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1554|NULL|0.3834500|-0.2385297	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339124|AK126661|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1554|NULL|0.3834500|-0.2385297	chr16	 23426691	 23428002	+	NA	NA	NA	NA	COG7	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_COG7:range=chr16:23400241-234643155'pad=0,hg19_refFlat_COG7:range=chr16:23400241-234643155'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70chr16:23413691-23438001"	NA	inner
CUST_14559_PI429285431	4.8096647	P	4.8548174	P	0.96918722926536	0	lncRNA	16228-1_{1..350}	lnc-PITRM1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PITRM1-3:1	chr10	  3089012	  3089361	-	lnc-PITRM1-3	lnc-PITRM1-3:1	XLOC_008690	linc-ADARB2-8	NA	NA	NA	inter
CUST_46258_PI429285431	1.8048776	A	1.9329119	A	0.91507741195115	0	lncRNA	50497-1_{1..463}	"gi|386365492|ref|NR_047686.1| Homo sapiens PCCA antisense RNA 1 (PCCA-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386365492|ref|NR_047686.1| Homo sapiens PCCA antisense RNA 1 (PCCA-AS1), non-coding RNA"	Chr13	101116691	101117153	-	100885777	NR_047686.1	NA	NA	NA	NA	NA	inter
CUST_33642_PI429285431	3.543868	P	4.1142325	P	0.673446619202497	0	lncRNA	35207-1_{1..586}	n340404|AF056420|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2865|NULL|1.6195100|-0.1488856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340404|AF056420|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2865|NULL|1.6195100|-0.1488856	chr5	 10994668	 10995253	-	NA	NA	NA	NA	CTNND2	NA	chr5:10984668-11005255	inner
CUST_24685_PI429285431	3.6440125	P	3.229187	P	1.33313741879164	0	lncRNA	26232-1_{1..409}	lnc-BANP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BANP-1:1	chr16	 88211954	 88212362	+	lnc-BANP-1	lnc-BANP-1:1	ENSG00000260162.1	RP11-863P13.1	NA	NA	NA	inter
CUST_41984_PI429285431	1.9270129	A	2.5610895	A	0.644353102358576	0	lncRNA	43809-1_{1..79}	ENST00000579460 ncrna:miRNA chromosome:GRCh37:6:120336325:120336403:1 gene:ENSG00000265725 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579460 ncrna:miRNA chromosome:GRCh37:6:120336325:120336403:1 gene:ENSG00000265725 gene_biotype:miRNA transcript_biotype:miRNA	chr6	120336325	120336403	+	ENSG00000265725	ENST00000579460	NA	NA	NA	NA	NA	inter
CUST_45577_PI429285431	1.5463328	A	1.755775	A	0.864871558446854	0	lncRNA	49971-1_{1..981}	"gi|299782561|ref|NR_033846.1| Homo sapiens uncharacterized LOC283033 (LOC283033), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299782561|ref|NR_033846.1| Homo sapiens uncharacterized LOC283033 (LOC283033), non-coding RNA"	Chr10	 44404752	 44405732	+	283033	NR_033846.1	NA	NA	NA	NA	NA	inter
CUST_5216_PI429285431	2.8711948	P	3.131515	P	0.834902595799458	0	lncRNA	5157-1_{1..396}	"transcript_id ""ENST00000563057.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563057.1"" | genecode_v17"	chr15	 68560130	 68560525	-	ENSG00000260657.1	ENST00000563057.1	RP11-315D16.4	RP11-315D16.4-001	FEM1B	NA	chr15:68570141-68580332	inner
CUST_19436_PI429285431	1.0496204	A	0.91509515	A	1.09773152205024	0	lncRNA	21096-1_{1..561}	lnc-SNX24-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNX24-1:1	chr5	122390158	122390718	+	lnc-SNX24-1	lnc-SNX24-1:1	ENSG00000249996.1	RP11-359P5.1	NA	"hg19_refFlat_PPIC:range=chr5:122359570-1223723205'pad=0,hg19_refFlat_PPIC:range=chr5:122359570-1223723205'pad=0 3'pad=0 strand=- repeatMasking=none,-101.00"	NA	inter
CUST_4535_PI429285431	0.9291568	A	0.9153853	A	1.00959138167954	0	lncRNA	4483-1_{1..494}	"transcript_id ""ENST00000537280.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537280.1"" | genecode_v17"	chr12	132131658	132132151	-	ENSG00000256424.1	ENST00000537280.1	RP11-495K9.7	RP11-495K9.7-001	NA	NA	NA	inter
CUST_27827_PI429285431	0.9091054	A	0.90935993	A	0.999823588810416	0	lncRNA	29413-1_{1..2490}	n325055|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000127626|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000127626|-0.2260760|-0.3275238	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n325055|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000127626|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000127626|-0.2260760|-0.3275238	chr20	 18251195	 18253684	-	NA	NA	NA	NA	ZNF133	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-10.60chr20:18269121-18297640"	NA	inner
CUST_30081_PI429285431	0.8963547	A	1.0865626	A	0.876479406888109	0	lncRNA	31853-1_{1..906}	n334605|U80741|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221580|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221580|2.9342400|-0.1722182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334605|U80741|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221580|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221580|2.9342400|-0.1722182	chr7	114066567	114067472	+	NA	NA	NA	NA	FOXP2	NA	chr7:114056567-114292601	inner
CUST_4418_PI429285431	1.6463094	A	1.0110033	A	1.55326727541381	0	lncRNA	4368-1_{1..435}	"transcript_id ""ENST00000547876.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547876.1"" | genecode_v17"	chr12	115206479	115206913	+	ENSG00000257517.1	ENST00000547876.1	RP4-601P9.1	RP4-601P9.1-001	NA	NA	NA	inter
LNCA_21_P0011660	0.92155075	A	0.9082222	A	1.00928145487915	0	lncRNA	THC2503207	NA	NA	NA	NA	XLOC_l2_006449	NA	NA	THC2503207	NA	"BROAD Institute lincRNA (XLOC_l2_006449), lincRNA [TCONS_l2_00012046]"	chr18:029304739-029304680	hs|18q12.1	Agilent_HUMAN_G3V2	THC2503207	THC2503207	chr18	 29304680	 29304739	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6626_PI429285431	3.61349	P	5.438589	P	0.282221734038313	0	lncRNA	6572-1_{1..536}	"transcript_id ""ENST00000411839.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000411839.1"" | genecode_v17"	chr20	  2187873	  2188408	+	ENSG00000226644.1	ENST00000411839.1	RP11-128M1.1	RP11-128M1.1-002	NA	NA	NA	inter
CUST_42668_PI429285431	0.9831842	A	0.96660495	A	1.01155814549063	0	lncRNA	45578-1_{1..130}	ENST00000364957 ncrna:snoRNA chromosome:GRCh37:3:133270030:133270159:1 gene:ENSG00000201827 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364957 ncrna:snoRNA chromosome:GRCh37:3:133270030:133270159:1 gene:ENSG00000201827 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	133270030	133270159	+	ENSG00000201827	ENST00000364957	NA	NA	NA	NA	NA	inter
CUST_31268_PI429285431	6.598142	P	4.7120237	P	3.69639337907254	0	lncRNA	33057-2_{3001..3596}	n337724|AK125664|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|106|NULL|-1.1525600|-0.3268759	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337724|AK125664|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|106|NULL|-1.1525600|-0.3268759	chrX	 54097776	 54098371	-	NA	NA	NA	NA	FAM120C	NA	chrX:54094757-54108372	inner
CUST_32858_PI429285431	5.1452284	P	5.411383	P	0.831532986064778	0	lncRNA	34489-1_{1..3000}	n339521|X87832|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1962|NULL|19.2526000|-0.1192334	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339521|X87832|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1962|NULL|19.2526000|-0.1192334	chr3	126707501	126710500	+	NA	NA	NA	NA	PLXNA1	NA	chr3:126707437-126756235	inner
CUST_51051_PI429285431	18.16772	P	17.925999	P	1.18240231563846	0	lncRNA	54693-1_{1..814}	hg19_lincRNAsTranscripts_TCONS_l2_00007075 range=chr13:23269999-23270909 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007075 range=chr13:23269999-23270909 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 23269999	 23270812	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45610_PI429285431	0.8938306	A	0.89325964	A	1.00039583763726	0	lncRNA	49996-1_{1..3000}	"gi|372220202|ref|NR_045663.3| Homo sapiens myopalladin (MYPN), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372220202|ref|NR_045663.3| Homo sapiens myopalladin (MYPN), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_045663.3	NA	NA	NA	NA	NA	Unknown
CUST_23353_PI429285431	1.11177	A	1.3434657	A	0.851633319297374	0	lncRNA	24923-1_{1..917}	lnc-EFR3A-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EFR3A-6:1	chr8	130856131	130857047	+	lnc-EFR3A-6	lnc-EFR3A-6:1	ENSG00000254317.1	RP11-473O4.5	FAM49B	NA	chr8:130853716-130866750	inter
CUST_18737_PI429285431	1.108069	A	0.8944729	A	1.15957497196028	0	lncRNA	20434-1_{1..628}	lnc-SART1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SART1-1:4	chr11	 65714351	 65714978	+	lnc-SART1-1	lnc-SART1-1:4	ENSG00000175513	TSGA10IP	TSGA10IP	NA	chr11:65713115-65724767	inner
CUST_47937_PI429285431	2.4440045	A	1.9367702	A	1.42132285350161	0	lncRNA	51828-1_{1..1030}	"gi|410172323|ref|XR_171712.1| PREDICTED: Homo sapiens uncharacterized LOC100507207 (LOC100507207), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172323|ref|XR_171712.1| PREDICTED: Homo sapiens uncharacterized LOC100507207 (LOC100507207), misc_RNA"	NA	NA	NA	NA	NA	XR_171712.1	NA	NA	NA	NA	NA	Unknown
CUST_32375_PI429285431	1.4265528	A	0.9605199	A	1.38130594783452	0	lncRNA	34051-1_{1..2096}	n338964|AK094176|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1392|NULL|-1.0987800|-0.4679856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338964|AK094176|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1392|NULL|-1.0987800|-0.4679856	chr2	135622096	135624191	-	NA	NA	NA	NA	ACMSD	NA	chr2:135612096-135634192	inner
LNCA_19_P00316937	0.92893654	A	2.268712	A	0.395082141442048	0	lncRNA	XR_109476	XR_109476	XR_109476	NA	Hs.729611	LOC100506854	NA	NA	THC2636278	NA	"PREDICTED: Homo sapiens hypothetical LOC100506854 (LOC100506854), miscRNA [XR_109476]"	chr18:37243420-37243479	hs|18q12.3	Agilent_HUMAN_G3V2	XR_109476	XR_109476	chr18	 37243420	 37243479	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15726_PI429285431	0.92216945	A	1.3077483	A	0.765471808014069	0	lncRNA	17411-1_{1..1929}	lnc-HPCAL1-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HPCAL1-1:11	chr2	 10595549	 10597477	+	lnc-HPCAL1-1	lnc-HPCAL1-1:11	XLOC_001342	linc-ATP6V1C2-4	ODC1	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_EFCAB5:range=chr17:28270646-284007085'pad=0,hg19_refFlat_EFCAB5:range=chr17:28270646-284007085'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80chr2:10585549-10588453"	NA	inter
CUST_42491_PI429285431	0.9108398	A	0.91205853	A	0.999155597445291	0	lncRNA	45259-1_{1..68}	ENST00000362913 ncrna:snoRNA chromosome:GRCh37:22:25297114:25297181:-1 gene:ENSG00000199783 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362913 ncrna:snoRNA chromosome:GRCh37:22:25297114:25297181:-1 gene:ENSG00000199783 gene_biotype:snoRNA transcript_biotype:snoRNA	chr22	 25297114	 25297181	-	ENSG00000199783	ENST00000362913	NA	NA	SGSM1	NA	chr22:25287114-25307181	inner
LNCA_21_P0005940	5.1670637	P	5.225194	P	0.960508109750333	0	lncRNA	ENST00000520259	NA	AK024336	NA	Hs.367827	XLOC_006833	NA	ENST00000520259	THC2508825	NA	"BROAD Institute lincRNA (XLOC_006833), lincRNA [TCONS_00015293]"	chr8:71397473-71397532	hs|8q13.3	Agilent_HUMAN_G3V2	ENST00000520259	ENST00000520259	chr8	 71397473	 71397532	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51658_PI429285431	3.4147441	P	3.0565133	A	1.28185297650662	0	lncRNA	55227-1_{1..1334}	hg19_lincRNAsTranscripts_TCONS_l2_00011409 range=chr17:62964154-62972076 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011409 range=chr17:62964154-62972076 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 62964154	 62965487	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27865_PI429285431	0.8995861	A	0.8957532	A	1.00266029615288	0	lncRNA	29458-1_{1..2057}	n325101|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328769|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328769|-1.2100000|-0.3810758	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325101|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328769|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328769|-1.2100000|-0.3810758	chr2	238186358	238188414	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31420_PI429285431	0.9136808	A	0.90563345	A	1.0055935839602	0	lncRNA	33192-1_{1..2321}	n337887|BC047580|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|270|NULL|-0.6974970|-0.1638582	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337887|BC047580|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|270|NULL|-0.6974970|-0.1638582	chrX	152846079	152848399	+	NA	NA	NA	NA	ATP2B3	NA	chrX:152836079-152848387	inner
CUST_21903_PI429285431	0.9251336	A	0.914218	A	1.00759481275535	0	lncRNA	23512-1_{1..275}	lnc-POLA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POLA1-1:1	chrX	 24676157	 24676431	+	lnc-POLA1-1	lnc-POLA1-1:1	ENSG00000236836.1	PCYT1B-AS1	PCYT1B	NA	chrX:24666157-24686354	inner
CUST_2731_PI429285431	0.8930643	A	0.8915182	A	1.00107224930455	0	lncRNA	2716-1_{1..439}	"transcript_id ""ENST00000415530.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415530.1"" | genecode_v17"	chr6	171045261	171045699	-	ENSG00000225532.1	ENST00000415530.1	XX-C2158C6.3	XX-C2158C6.3-001	NA	NA	NA	inter
CUST_40008_PI429285431	1.4161253	A	1.4747553	A	0.960175480347315	0	lncRNA	40870-2_{3001..3081}	n407156|NR_026570|lncRNA|Homosapiens||RefGeneNoncode|NR_026570||4.0157400|-0.2603840	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407156|NR_026570|lncRNA|Homosapiens||RefGeneNoncode|NR_026570||4.0157400|-0.2603840	chr18	 32624323	 32624403	+	NA	NA	NA	NA	MAPRE2	NA	chr18:32611323-32722378	inter
CUST_13830_PI429285431	2.4874916	A	3.6904168	P	0.43439361417489	0	lncRNA	15473-1_{1..283}	lnc-FBXO15-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXO15-5:3	chr18	 71314806	 71315088	-	lnc-FBXO15-5	lnc-FBXO15-5:3	XLOC_012879	linc-NETO1-5	NA	NA	NA	inter
CUST_39420_PI429285431	0.90974206	A	0.9026499	A	1.00492801362128	0	lncRNA	40380-1_{1..1687}	n386718|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tbf.1||5.7364100|-0.2052614	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n386718|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tbf.1||5.7364100|-0.2052614	chr12	126927026	126928712	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30776_PI429285431	7.7730303	P	7.883456	P	0.926314691332503	0	lncRNA	32562-1_{1..289}	n336620|Z36853|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327161|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327161|-0.9074800|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336620|Z36853|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327161|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327161|-0.9074800|-1.0000000	chr20	 25277958	 25278246	+	NA	NA	NA	NA	ABHD12	NA	chr20:25275379-25288247	inner
LNCA_21_P0003619	1.0523834	A	1.0496856	A	1.00187172195255	0	lncRNA	TCONS_00008096	NA	NA	NA	NA	XLOC_003562	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003562), lincRNA [TCONS_00008096]"	chr4:66899782-66899841	hs|4q13.2	Agilent_HUMAN_G3V2	TCONS_00008096	TCONS_00008096	chr4	 66899782	 66899841	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1533_PI429285431	0.9121719	A	0.9059382	A	1.00433022000466	0	lncRNA	1520-1_{1..553}	"transcript_id ""ENST00000463978.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000463978.1"" | genecode_v17"	chr3	164431883	164432435	-	ENSG00000241767.2	ENST00000463978.1	RP11-71H9.1	RP11-71H9.1-002	NA	NA	NA	inter
CUST_4245_PI429285431	6.5794697	P	6.7757797	P	0.872780031827846	0	lncRNA	4202-1_{1..343}	"transcript_id ""ENST00000550684.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550684.1"" | genecode_v17"	chr12	 48220637	 48220979	+	ENSG00000257488.1	ENST00000550684.1	RP5-1057I20.2	RP5-1057I20.2-003	VDR	NA	chr12:48235320-48238304	inter
CUST_27022_PI429285431	0.9245504	A	0.9293983	A	0.996645331300412	0	lncRNA	28552-1_{1..477}	n324127|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001152|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001152|-1.0322000|-0.2527811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324127|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001152|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001152|-1.0322000|-0.2527811	chr9	 34655024	 34655500	-	NA	NA	NA	NA	IL11RA	"hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.34;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00chr9:34652182-34661884"	NA	inter
CUST_27663_PI429285431	2.1344576	A	1.8447287	A	1.22241055025185	0	lncRNA	29241-1_{1..726}	n324870|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171046|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171046|-1.0633100|-0.2654146	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324870|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171046|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171046|-1.0633100|-0.2654146	chr21	 22392806	 22393531	+	NA	NA	NA	NA	NCAM2	NA	chr21:22382806-22420718	inner
CUST_25244_PI429285431	0.92730683	A	0.91877013	A	1.00593473068332	0	lncRNA	26774-1_{1..810}	lnc-HNRNPU-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HNRNPU-4:1	chr1	245397689	245398498	-	lnc-HNRNPU-4	lnc-HNRNPU-4:1	ENSG00000232192.1	RP11-62I21.1	KIF26B	NA	chr1:245387689-245407803	inner
CUST_8173_PI429285431	0.9256528	A	0.9303325	A	0.996761534317999	0	lncRNA	9774-1_{1..631}	lnc-C1orf31-6:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf31-6:5	chr1	234818438	234819068	+	lnc-C1orf31-6	lnc-C1orf31-6:5	ENSG00000228044	XLOC_000624	NA	NA	NA	inter
CUST_37225_PI429285431	0.9857105	A	0.9690415	A	1.01162107643929	0	lncRNA	38337-1_{1..3000}	n345660|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1209|NULL|-1.3176000|-0.4580732	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345660|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1209|NULL|-1.3176000|-0.4580732	chr5	 12653169	 12656168	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-23.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.59;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-62.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-23.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30"	NA	inter
CUST_37798_PI429285431	5.7900896	P	5.6041994	P	1.13751865080851	0	lncRNA	38890-1_{1..757}	n346305|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1855|NULL|-1.6190000|-0.3331456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346305|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1855|NULL|-1.6190000|-0.3331456	chr17	 30410031	 30410787	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8411_PI429285431	0.91764987	A	0.90544015	A	1.00849904654569	0	lncRNA	9987-2_{3001..6000}	lnc-KIF13B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIF13B-2:1	chr8	 28919370	 28922369	-	lnc-KIF13B-2	lnc-KIF13B-2:1	ENSG00000247743	AC091558.1	HMBOX1	NA	chr8:28906370-28910242	inter
CUST_44753_PI429285431	6.3437223	P	6.768221	P	0.745097589133076	0	lncRNA	49299-2_{3001..4585}	"gi|254826702|ref|NR_026938.2| Homo sapiens adenylate cyclase 10 (soluble) pseudogene 1 (ADCY10P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254826702|ref|NR_026938.2| Homo sapiens adenylate cyclase 10 (soluble) pseudogene 1 (ADCY10P1), non-coding RNA"	Chr6	 41071773	 41073357	+	221442	NR_026938.2	NA	NA	NA	NA	NA	inter
CUST_9996_PI429285431	1.9350135	A	2.3514445	A	0.749275923927248	0	lncRNA	11522-1_{1..369}	lnc-PARN-6:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PARN-6:6	chr16	 14109719	 14110087	-	lnc-PARN-6	lnc-PARN-6:6	XLOC_011880	linc-CPPED1-3	NA	NA	NA	inter
CUST_16674_PI429285431	3.8305662	P	4.101412	P	0.828833488208275	0	lncRNA	18378-1_{1..1014}	lnc-MS4A8B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MS4A8B-1:1	chr11	 60454383	 60455396	+	lnc-MS4A8B-1	lnc-MS4A8B-1:1	XLOC_009142	linc-MS4A8B	NA	NA	NA	inter
CUST_16018_PI429285431	0.9188709	A	0.90331113	A	1.0108435807463	0	lncRNA	17713-1_{1..220}	lnc-AKAP4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AKAP4-1:1	chrX	 49969060	 49969279	-	lnc-AKAP4-1	lnc-AKAP4-1:1	XLOC_008165	linc-AKAP4	AKAP4	NA	chrX:49959060-49965664	inter
CUST_50591_PI429285431	6.33429	P	6.1309624	P	1.15135090467192	0	lncRNA	54282-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00003632 range=chr10:81421262-81588870 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003632 range=chr10:81421262-81588870 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 81421262	 81424261	-	NA	NA	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00"	NA	inter
CUST_12960_PI429285431	1.406138	A	1.3906608	A	1.01078572862673	0	lncRNA	14587-1_{1..307}	lnc-RNF152-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF152-3:1	chr18	 59274084	 59274390	-	lnc-RNF152-3	lnc-RNF152-3:1	XLOC_012861	linc-MC4R-1	NA	NA	NA	inter
CUST_3067_PI429285431	0.9187674	A	0.926075	A	0.994947564371154	0	lncRNA	3046-1_{1..563}	"transcript_id ""ENST00000524167.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524167.1"" | genecode_v17"	chr8	 35719641	 35720203	+	ENSG00000253452.1	ENST00000524167.1	RP11-473J6.1	RP11-473J6.1-002	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10"	NA	inter
CUST_28262_PI429285431	0.8989674	A	0.89848906	A	1.00033161499445	0	lncRNA	29897-2_{3001..3239}	n325554|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256893|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256893|2.5535800|-0.2766341	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325554|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256893|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256893|2.5535800|-0.2766341	chr17	 34442684	 34442922	+	NA	NA	NA	NA	TBC1D3B	NA	chr17:34445502-34464720	inter
LNCA_21_P0014254	4.101107	P	3.840491	P	1.19799011164764	0	lncRNA	XR_109026	XR_109026	XR_109026	NA	Hs.408581	LOC645954	supervillin pseudogene	NA	NA	NA	"PREDICTED: Homo sapiens supervillin pseudogene (LOC645954), miscRNA [XR_109026]"	chr10:30993478-30993537	hs|10p11.23	Agilent_HUMAN_G3V2	XR_109026	XR_109026	chr10	 30993478	 30993537	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47652_PI429285431	11.4409075	P	11.393585	P	1.0333453558533	0	lncRNA	51636-1_{1..2606}	"gi|228480214|ref|NR_027621.1| Homo sapiens four and a half LIM domains 1 (FHL1), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|228480214|ref|NR_027621.1| Homo sapiens four and a half LIM domains 1 (FHL1), transcript variant 8, non-coding RNA"	ChrX	135228861	135231466	+	2273	NR_027621.1	NA	NA	NA	NA	NA	inter
CUST_9655_PI429285431	0.9349042	A	0.9422596	A	0.99491459988152	0	lncRNA	11173-1_{1..3000}	lnc-KB-1448A5.1.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KB-1448A5.1.1-1:3	chr8	 97398610	 97401609	-	lnc-KB-1448A5.1.1-1	lnc-KB-1448A5.1.1-1:3	XLOC_007166	linc-MTERFD1	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10"	NA	inter
CUST_42180_PI429285431	0.9177853	A	0.9228462	A	0.996498197097152	0	lncRNA	44237-1_{1..79}	ENST00000584064 ncrna:miRNA chromosome:GRCh37:5:128433381:128433459:1 gene:ENSG00000264563 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584064 ncrna:miRNA chromosome:GRCh37:5:128433381:128433459:1 gene:ENSG00000264563 gene_biotype:miRNA transcript_biotype:miRNA	chr5	128433381	128433459	+	ENSG00000264563	ENST00000584064	NA	NA	ISOC1	NA	chr5:128430442-128443459	inner
CUST_41269_PI429285431	9.061569	P	9.074572	P	0.991027502478179	0	lncRNA	42234-1_{1..86}	ENST00000578184 ncrna:miRNA chromosome:GRCh37:HSCHR6_MHC_MCF:30630566:30630651:1 gene:ENSG00000266871 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578184 ncrna:miRNA chromosome:GRCh37:HSCHR6_MHC_MCF:30630566:30630651:1 gene:ENSG00000266871 gene_biotype:miRNA transcript_biotype:miRNA	chrHSCHR6_MHC_MCF	 30630566	 30630651	+	ENSG00000266871	ENST00000578184	NA	NA	NA	NA	NA	Unknown
CUST_50663_PI429285431	0.9107251	A	1.0218555	A	0.925862333389078	0	lncRNA	54339-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00003499 range=chr10:43009044-43048251 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003499 range=chr10:43009044-43048251 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 43009044	 43012043	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2438_PI429285431	0.92102	A	0.9124837	A	1.00593445177903	0	lncRNA	2430-1_{1..372}	"transcript_id ""ENST00000518675.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518675.1"" | genecode_v17"	chr5	173217812	173218183	-	ENSG00000254211.1	ENST00000518675.1	CTB-43E15.4	CTB-43E15.4-002	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90"	NA	inter
CUST_24208_PI429285431	2.6619937	A	1.4649761	A	2.29265234024705	0	lncRNA	25759-1_{1..951}	lnc-TACC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-TACC2-1:1	chr10	123710853	123711803	+	lnc-TACC2-1	lnc-TACC2-1:1	ENSG00000226864.1	RP11-500G22.2	NSMCE4A	NA	chr10:123716603-123721480	inter
CUST_22033_PI429285431	12.039553	P	11.686028	P	1.27767862475906	0	lncRNA	23642-1_{1..402}	lnc-AGRN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AGRN-1:1	chr1	   991278	   991679	+	lnc-AGRN-1	lnc-AGRN-1:1	ENSG00000242590.1	RP11-54O7.14	AGRN	NA	chr1:981278-991492	inner
CUST_49512_PI429285431	0.9091587	A	1.0791531	A	0.888846131326537	0	lncRNA	53304-1_{1..235}	hg19_lincRNAsTranscripts_TCONS_l2_00024680 range=chr6:28007038-28028206 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024680 range=chr6:28007038-28028206 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 28007038	 28007272	-	NA	NA	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-23.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20"	NA	inter
CUST_48436_PI429285431	6.5793104	P	7.008702	P	0.742574871095916	0	lncRNA	52288-1_{1..1041}	hg19_lincRNAsTranscripts_TCONS_l2_00002224 range=chr1:157895764-157918861 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002224 range=chr1:157895764-157918861 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	157895764	157896804	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46798_PI429285431	0.9340931	A	0.9657859	A	0.978271759385886	0	lncRNA	50943-1_{1..1215}	"gi|60593083|ref|NR_002222.1| Homo sapiens arginine-fifty homeobox pseudogene 2 (ARGFXP2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|60593083|ref|NR_002222.1| Homo sapiens arginine-fifty homeobox pseudogene 2 (ARGFXP2), non-coding RNA"	Chr17	 30477376	 30478590	-	503640	NR_002222.1	NA	NA	NA	NA	NA	inter
CUST_28931_PI429285431	1.294227	A	1.1304058	A	1.12025036767936	0	lncRNA	30649-1_{1..575}	n326357|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000071456|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000071456|-1.0855300|-0.1036391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326357|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000071456|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000071456|-1.0855300|-0.1036391	chr1	159168152	159168726	-	NA	NA	NA	NA	CADM3	"hg19_refFlat_CADM3:range=chr1:159141556-1591707125'pad=0,hg19_refFlat_CADM3:range=chr1:159141556-1591707125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90chr1:159158152-159172932"	NA	inter
CUST_3047_PI429285431	0.917949	A	0.91179574	A	1.00427422336753	0	lncRNA	3026-1_{1..465}	"transcript_id ""ENST00000522524.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522524.1"" | genecode_v17"	chr8	 25634195	 25634659	+	ENSG00000253342.1	ENST00000522524.1	RP11-219J21.2	RP11-219J21.2-001	NA	NA	NA	inter
CUST_48294_PI429285431	2.3663597	A	1.6488878	A	1.64429813023127	0	lncRNA	52152-1_{1..1188}	hg19_lincRNAsTranscripts_TCONS_l2_00000119 range=chr1:16972281-16973789 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000119 range=chr1:16972281-16973789 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16972281	 16973468	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_52100_PI429285431	5.367843	P	6.012192	P	0.639781419722897	0	lncRNA	55626-1_{1..681}	hg19_lincRNAsTranscripts_TCONS_l2_00017564 range=chr22:17518149-17532828 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017564 range=chr22:17518149-17532828 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17518149	 17518829	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19197_PI429285431	3.828457	P	3.708781	P	1.08649083135457	0	lncRNA	20867-1_{1..544}	lnc-INPP5F-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-INPP5F-1:1	chr10	121673563	121674106	+	lnc-INPP5F-1	lnc-INPP5F-1:1	ENSG00000229304.1	RP11-198M6.5	SEC23IP	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10chr10:121663563-121683914"	NA	inter
CUST_49962_PI429285431	1.1849939	A	1.1128644	A	1.05126726929385	0	lncRNA	53711-1_{1..693}	hg19_lincRNAsTranscripts_TCONS_l2_00027510 range=chr7:141987201-141991423 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027510 range=chr7:141987201-141991423 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	141987201	141987893	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44825_PI429285431	1.5522215	A	1.1004913	A	1.36767950872285	0	lncRNA	49356-2_{3001..3082}	"gi|300796161|ref|NR_034115.1| Homo sapiens STXBP5 antisense RNA 1 (STXBP5-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300796161|ref|NR_034115.1| Homo sapiens STXBP5 antisense RNA 1 (STXBP5-AS1), non-coding RNA"	Chr6	147165524	147165605	-	729178	NR_034115.1	NA	NA	NA	"hg19_refFlat_STXBP5:range=chr6:147525669-1477058915'pad=0,hg19_refFlat_STXBP5:range=chr6:147525669-1477058915'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.70"	NA	inter
CUST_9733_PI429285431	2.9892302	P	3.147993	P	0.895792939342201	0	lncRNA	11249-1_{1..302}	lnc-CXXC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CXXC1-1:1	chr18	 47967801	 47968102	-	lnc-CXXC1-1	lnc-CXXC1-1:1	XLOC_012842	linc-CXXC1	NA	NA	NA	inter
CUST_20006_PI429285431	4.525693	P	4.8002	P	0.826732782305504	0	lncRNA	21659-1_{1..1294}	lnc-KIR2DL4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-KIR2DL4-1:1	chr19	 55309395	 55310688	+	lnc-KIR2DL4-1	lnc-KIR2DL4-1:1	ENSG00000215765.3	CTB-61M7.1	KIR2DL4	NA	chr19:55315067-55319738	inner
CUST_43053_PI429285431	10.5225525	P	10.7104225	P	0.877900900934958	0	lncRNA	46761-1_{1..126}	ENST00000516592 ncrna:snRNA chromosome:GRCh37:10:28941559:28941684:1 gene:ENSG00000252401 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516592 ncrna:snRNA chromosome:GRCh37:10:28941559:28941684:1 gene:ENSG00000252401 gene_biotype:snRNA transcript_biotype:snRNA	chr10	 28941559	 28941684	+	ENSG00000252401	ENST00000516592	NA	NA	NA	NA	NA	inter
LNCA_21_P0004851	0.932437	A	0.9180403	A	1.01002898858881	0	lncRNA	TCONS_00011730	NA	NA	NA	NA	XLOC_005198	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005198), lincRNA [TCONS_00011730]"	chr6:22352839-22517931	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00011730	TCONS_00011730	chr6	 22352839	 22517931	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011524	0.9311335	A	0.9175468	A	1.00946206776829	0	lncRNA	TCONS_l2_00010607	NA	NA	NA	NA	XLOC_l2_005692	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005692), lincRNA [TCONS_l2_00010607]"	chr17:19534109-19534168	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00010607	TCONS_l2_00010607	chr17	 19534109	 19534168	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19538_PI429285431	0.9091142	A	0.9027401	A	1.00442796403261	0	lncRNA	21194-1_{1..1397}	lnc-DLX2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DLX2-4:1	chr2	173420817	173422213	-	lnc-DLX2-4	lnc-DLX2-4:1	ENSG00000225205.1	AC093818.1	PDK1	"hg19_refFlat_ITGA6:range=chr2:173292517-1733689805'pad=0,hg19_refFlat_ITGA6:range=chr2:173292517-1733689805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PDK3:range=chrX:24483573-245521895'pad=0,hg19_refFlat_PDK3:range=chrX:24483573-245521895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_PDK1:range=chr2:173420879-1734606975'pad=0,hg19_refFlat_PDK1:range=chr2:173420879-1734606975'pad=0 3'pad=0 strand=+ repeatMasking=none,-111.50;hg19_refFlat_PDK3:range=chrX:24483573-245572815'pad=0,hg19_refFlat_PDK3:range=chrX:24483573-245572815'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10chr2:173420779-173431324"	NA	inner
CUST_48118_PI429285431	4.4627953	P	3.1933885	A	2.4106242633692	0	lncRNA	51989-2_{3001..3939}	"gi|410169817|ref|XR_111043.4| PREDICTED: Homo sapiens supervillin pseudogene (LOC645954), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410169817|ref|XR_111043.4| PREDICTED: Homo sapiens supervillin pseudogene (LOC645954), misc_RNA"	NA	NA	NA	NA	NA	XR_111043.4	NA	NA	NA	NA	NA	Unknown
CUST_49853_PI429285431	7.0234547	P	7.154106	P	0.913418997090519	0	lncRNA	53605-1_{1..508}	hg19_lincRNAsTranscripts_TCONS_l2_00026663 range=chr7:66049142-66057439 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026663 range=chr7:66049142-66057439 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 66049142	 66049649	-	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80"	NA	inter
CUST_21147_PI429285431	0.98542565	A	0.9626484	A	1.01591327536308	0	lncRNA	22770-3_{6001..7344}	lnc-GJA10-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GJA10-3:4	chr6	 90587008	 90588351	+	lnc-GJA10-3	lnc-GJA10-3:4	ENSG00000118412.8	CASP8AP2	CASP8AP2	NA	chr6:90571008-90584155	inner
CUST_28240_PI429285431	1.0898458	A	0.9034556	A	1.13791295305476	0	lncRNA	29875-1_{1..1747}	n325531|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255287|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255287|0.0688153|-0.3291410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325531|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255287|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255287|0.0688153|-0.3291410	chr17	 67892037	 67893783	-	NA	NA	NA	NA	KCNJ16	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00chr17:68071426-68110538"	NA	inner
CUST_23842_PI429285431	0.9069654	A	0.90005535	A	1.00480117053564	0	lncRNA	25405-1_{1..389}	lnc-HSPA4-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSPA4-3:2	chr5	132611433	132611821	+	lnc-HSPA4-3	lnc-HSPA4-3:2	ENSG00000250244.1	CTB-49A3.4	FSTL4	NA	chr5:132601433-132621669	inner
CUST_40320_PI429285431	3.9276364	P	4.4686375	P	0.687293823750461	0	lncRNA	41123-1_{1..394}	n408360|NR_029455|lncRNA|Homosapiens||RefGeneNoncode|NR_029455||-0.1562740|-0.1084973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408360|NR_029455|lncRNA|Homosapiens||RefGeneNoncode|NR_029455||-0.1562740|-0.1084973	chr16	  4845378	  4845771	+	NA	NA	NA	NA	ROGDI	NA	chr16:4846969-4852674	inner
CUST_19434_PI429285431	0.93803835	A	0.9861079	A	0.967229699906851	0	lncRNA	21094-1_{1..345}	lnc-C4orf21-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C4orf21-1:3	chr4	113569810	113570154	-	lnc-C4orf21-1	lnc-C4orf21-1:3	ENSG00000249532.1	RP11-148B6.1	LARP7	"hg19_refFlat_LARP7:range=chr4:113565626-1135784835'pad=0,hg19_refFlat_LARP7:range=chr4:113565626-1135784835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_LARP7:range=chr4:113565826-1135784835'pad=0,hg19_refFlat_LARP7:range=chr4:113565826-1135784835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90chr4:113559810-113578742"	NA	inner
CUST_27629_PI429285431	1.2038363	A	0.9560834	A	1.18735628222833	0	lncRNA	29207-1_{1..449}	n324833|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171688|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171688|-1.3517900|-0.3146528	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324833|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171688|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171688|-1.3517900|-0.3146528	chr21	 28384503	 28384951	+	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70"	NA	inter
CUST_2211_PI429285431	0.8843179	A	0.8949883	A	0.992631126591049	0	lncRNA	2203-1_{1..440}	"transcript_id ""ENST00000515871.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515871.1"" | genecode_v17"	chr5	 79904442	 79904881	-	ENSG00000251221.1	ENST00000515871.1	CTC-325J23.3	CTC-325J23.3-001	DHFR	NA	chr5:79922045-79928343	inter
CUST_18266_PI429285431	0.9113339	A	0.88960254	A	1.01517705013624	0	lncRNA	20000-1_{1..1345}	lnc-ENPP1-4:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENPP1-4:8	chr6	132467360	132468704	+	lnc-ENPP1-4	lnc-ENPP1-4:8	ENSG00000228495	RP3-523C21.1	NA	NA	NA	inter
CUST_5010_PI429285431	4.9905868	P	5.3090935	P	0.801899475617475	0	lncRNA	4951-1_{1..954}	"transcript_id ""ENST00000522618.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522618.1"" | genecode_v17"	chr14	101302057	101303010	+	ENSG00000214548.9	ENST00000522618.1	MEG3	MEG3-019	NA	NA	NA	inter
LNCA_21_P0008351	0.92490447	A	0.90941966	A	1.01079106038394	0	lncRNA	TCONS_00022535	NA	NA	NA	NA	XLOC_010856	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010856), lincRNA [TCONS_00022535]"	chr14:66595452-66595511	hs|14q23.3	Agilent_HUMAN_G3V2	TCONS_00022535	TCONS_00022535	chr14	 66595452	 66595511	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22405_PI429285431	4.300152	P	4.536314	P	0.849000906915352	0	lncRNA	23994-1_{1..206}	lnc-MAN2C1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAN2C1-4:1	chr15	 75504438	 75504643	-	lnc-MAN2C1-4	lnc-MAN2C1-4:1	ENSG00000261779.1	RP11-69H7.3	C15orf39	NA	chr15:75494438-75504510	inner
CUST_50210_PI429285431	1.4619417	A	1.6827507	A	0.858084125620168	0	lncRNA	53936-1_{1..569}	hg19_lincRNAsTranscripts_TCONS_l2_00028757 range=chr9:65629315-65635808 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028757 range=chr9:65629315-65635808 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 65629315	 65629883	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4644_PI429285431	2.1488004	A	1.8953749	A	1.19203409426688	0	lncRNA	4590-1_{1..485}	"transcript_id ""ENST00000452852.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452852.1"" | genecode_v17"	chr13	 74120525	 74121009	-	ENSG00000224853.1	ENST00000452852.1	LINC00393	LINC00393-002	NA	NA	NA	inter
CUST_4121_PI429285431	3.0525613	A	3.5145254	P	0.725997205429861	0	lncRNA	4081-1_{1..516}	"transcript_id ""ENST00000532272.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532272.1"" | genecode_v17"	chr11	133896882	133897397	+	ENSG00000255406.1	ENST00000532272.1	RP11-713P17.5	RP11-713P17.5-001	NA	NA	NA	inter
CUST_44739_PI429285431	9.563154	P	9.3229475	P	1.18116171478593	0	lncRNA	49291-1_{1..1813}	"gi|224465153|ref|NR_027117.1| Homo sapiens uncharacterized LOC285847 (LOC285847), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224465153|ref|NR_027117.1| Homo sapiens uncharacterized LOC285847 (LOC285847), non-coding RNA"	Chr6	 35694539	 35696351	-	285847	NR_027117.1	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10"	NA	inter
CUST_39340_PI429285431	5.4515452	P	3.6620216	P	3.45700718000976	0	lncRNA	40307-1_{1..1117}	n386409|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010jrd.2||-1.1834200|-0.2954743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386409|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010jrd.2||-1.1834200|-0.2954743	chr6	 28334981	 28336097	+	NA	NA	NA	NA	ZSCAN12	NA	chr6:28346598-28346930	inner
LNCA_21_P0004442	3.630043	P	3.8096063	P	0.882970228612654	0	lncRNA	THC2786259	NA	NA	NA	NA	XLOC_004989	NA	NA	THC2786259	NA	"BROAD Institute lincRNA (XLOC_004989), lincRNA [TCONS_00010469]"	chr5:126567976-126567917	hs|5q23.2	Agilent_HUMAN_G3V2	THC2786259	THC2786259	chr5	126567917	126567976	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_436_PI429285431	6.870967	P	6.5581293	P	1.24214853496217	0	lncRNA	428-1_{1..452}	"transcript_id ""ENST00000411978.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000411978.1"" | genecode_v17"	chr1	147635092	147635543	+	ENSG00000232265.2	ENST00000411978.1	XXyac-YX155B6.5	XXyac-YX155B6.5-002	NA	NA	NA	inter
CUST_38497_PI429285431	4.4649377	P	4.364606	P	1.07201990971962	0	lncRNA	39511-1_{1..2768}	n383033|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fqc.1||1.7820500|-0.2382525	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383033|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fqc.1||1.7820500|-0.2382525	chr16	 90056739	 90059506	+	NA	NA	NA	NA	DBNDD1	NA	chr16:90071279-90073028	inter
CUST_23169_PI429285431	0.9145969	A	0.9148593	A	0.999818134719317	0	lncRNA	24740-1_{1..343}	lnc-FMR1NB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FMR1NB-1:1	chrX	147029000	147029342	+	lnc-FMR1NB-1	lnc-FMR1NB-1:1	ENSG00000236337.1	FMR1-IT1	FMR1	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.82chrX:147019000-147032647"	NA	inter
CUST_46819_PI429285431	11.116379	P	11.560873	P	0.734842004400514	0	lncRNA	50959-2_{3001..3641}	"gi|392583924|ref|NR_052017.1| Homo sapiens mediator complex subunit 24 (MED24), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392583924|ref|NR_052017.1| Homo sapiens mediator complex subunit 24 (MED24), transcript variant 4, non-coding RNA"	Chr17	 38178350	 38178990	-	9862	NR_052017.1	NA	NA	NA	NA	NA	inter
CUST_11092_PI429285431	6.591015	P	6.4421306	P	1.10871180139067	0	lncRNA	12646-1_{1..474}	lnc-MYCN-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-MYCN-2:3	chr2	 16221020	 16221493	+	lnc-MYCN-2	lnc-MYCN-2:3	XLOC_001365	linc-VSNL1-8	NA	NA	NA	inter
CUST_38907_PI429285431	12.224081	P	11.060846	P	2.23959055357983	0	lncRNA	39896-1_{1..1078}	n384971|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003plc.3||-1.1521100|-0.4166136	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n384971|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003plc.3||-1.1521100|-0.4166136	chr6	 86386725	 86387802	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34812_PI429285431	0.92172074	A	0.9177591	A	1.0027497733067	0	lncRNA	36246-1_{1..619}	n341719|CR592272|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4192|NULL|-1.1934800|-0.2479096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341719|CR592272|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4192|NULL|-1.1934800|-0.2479096	chr9	 92920309	 92920927	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43978_PI429285431	3.9543085	P	3.1664143	A	1.72655249582757	0	lncRNA	48679-1_{1..3000}	"gi|310119042|ref|XR_109894.1| PREDICTED: Homo sapiens uncharacterized LOC100507460 (LOC100507460), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310119042|ref|XR_109894.1| PREDICTED: Homo sapiens uncharacterized LOC100507460 (LOC100507460), misc_RNA"	Chr2	132442470	132445469	+	100507460	XR_109894.1	NA	NA	NA	NA	NA	inter
CUST_36256_PI429285431	0.92192364	A	0.9062228	A	1.01094242816172	0	lncRNA	37498-1_{1..1633}	n344791|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_340|NULL|-1.3225700|-0.4024593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344791|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_340|NULL|-1.3225700|-0.4024593	chr15	 83419335	 83420967	+	NA	NA	NA	NA	FSD2	NA	chr15:83428024-83435918	inter
CUST_25498_PI429285431	1.9254491	A	1.6896143	A	1.1775879387357	0	lncRNA	27028-1_{1..526}	lnc-ATP13A5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ATP13A5-1:1	chr3	192894392	192894917	-	lnc-ATP13A5-1	lnc-ATP13A5-1:1	ENSG00000232130.1	RP11-143P4.2	NA	NA	NA	inter
CUST_40292_PI429285431	0.93876505	A	0.89924735	A	1.02777018062576	0	lncRNA	41096-1_{1..786}	n408242|NR_028409|lncRNA|Homosapiens||RefGeneNoncode|NR_028409||3.6763700|-0.1487709	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n408242|NR_028409|lncRNA|Homosapiens||RefGeneNoncode|NR_028409||3.6763700|-0.1487709	chr22	 44965219	 44966004	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2684_PI429285431	0.97962236	A	0.9249815	A	1.03860052514152	0	lncRNA	2670-1_{1..420}	"transcript_id ""ENST00000427460.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427460.1"" | genecode_v17"	chr6	159774954	159775373	-	ENSG00000231178.1	ENST00000427460.1	RP11-125D12.1	RP11-125D12.1-001	NA	NA	NA	inter
CUST_44991_PI429285431	10.677381	P	10.606569	P	1.05030766774652	0	lncRNA	49500-1_{1..1782}	"gi|190194394|ref|NR_023383.1| Homo sapiens DTX2P1-UPK3BP1-PMS2P11 readthrough (non-protein coding) (DTX2P1-UPK3BP1-PMS2P11), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|190194394|ref|NR_023383.1| Homo sapiens DTX2P1-UPK3BP1-PMS2P11 readthrough (non-protein coding) (DTX2P1-UPK3BP1-PMS2P11), non-coding RNA"	Chr7	 76610139	 76611920	+	441263	NR_023383.1	NA	NA	NA	NA	NA	inter
CUST_35669_PI429285431	1.6063001	A	2.2809246	A	0.6264952602537	0	lncRNA	37091-1_{1..1504}	n342829|AF124366|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5332|NULL|-0.9754350|-0.2118529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342829|AF124366|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5332|NULL|-0.9754350|-0.2118529	chr8	 11279006	 11280509	+	NA	NA	NA	NA	FAM167A	NA	chr8:11278973-11290443	inter
CUST_33377_PI429285431	6.164353	P	5.8339667	P	1.25735000095313	0	lncRNA	34956-1_{1..2678}	n340094|BC041821|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2549|NULL|-1.1019500|-0.2564965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340094|BC041821|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2549|NULL|-1.1019500|-0.2564965	chr10	 87192618	 87195295	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24966_PI429285431	9.244547	P	9.207807	P	1.02579326199404	0	lncRNA	26504-1_{1..459}	lnc-TLCD2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TLCD2-2:1	chr17	  1641585	  1642043	-	lnc-TLCD2-2	lnc-TLCD2-2:1	ENSG00000262791.1	RP11-961A15.1	WDR81	"hg19_refFlat_WDR81:range=chr17:1628254-16409795'pad=0,hg19_refFlat_WDR81:range=chr17:1628254-16409795'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.40chr17:1631585-1641893"	NA	inner
CUST_20529_PI429285431	1.5344194	A	1.7143846	A	0.882724288687098	0	lncRNA	22171-1_{1..552}	lnc-LIFR-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIFR-4:1	chr5	 38346595	 38347146	-	lnc-LIFR-4	lnc-LIFR-4:1	ENSG00000249071.1	EGFLAM-AS3	EGFLAM	NA	chr5:38336595-38356653	inner
CUST_7951_PI429285431	6.4419293	P	6.358676	P	1.05940432240216	0	lncRNA	9563-1_{1..2158}	lnc-FLII-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FLII-1:1	chr17	 18087711	 18089868	-	lnc-FLII-1	lnc-FLII-1:1	ENSG00000246628	ENSG00000266677.1	ALKBH5	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_ALKBH5:range=chr17:18087558-181117105'pad=0,hg19_refFlat_ALKBH5:range=chr17:18087558-181117105'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-56.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr17:18086867-18098067"	NA	inner
CUST_16198_PI429285431	3.9702005	P	2.3642533	A	3.04395535644106	0	lncRNA	17904-1_{1..1663}	lnc-SCRG1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCRG1-1:2	chr4	174290585	174292247	-	lnc-SCRG1-1	lnc-SCRG1-1:2	XLOC_004165	linc-HMGB2	SAP30	NA	chr4:174292093-174298683	inter
CUST_33739_PI429285431	1.2242844	A	0.93688816	A	1.22043566011979	0	lncRNA	35296-1_{1..1046}	n340517|BC012754|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2979|NULL|0.2251830|-0.2472457	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340517|BC012754|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2979|NULL|0.2251830|-0.2472457	chr17	 15332272	 15333317	-	NA	NA	NA	NA	FAM18B2-CDRT4	"hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90chr17:15339332-15343318"	NA	inter
CUST_26735_PI429285431	9.007892	P	9.11796	P	0.926544389110236	0	lncRNA	28230-1_{1..307}	n5726|X72205|snoRNA|Homosapiens|u16snoRNA|NONCODEv2.0|n5726|NULL|-1.5906100|-0.3436204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n5726|X72205|snoRNA|Homosapiens|u16snoRNA|NONCODEv2.0|n5726|NULL|-1.5906100|-0.3436204	chr15	 66795088	 66795394	-	NA	NA	NA	NA	ZWILCH	NA	chr15:66797431-66805395	inter
CUST_49852_PI429285431	10.180992	P	9.566253	P	1.53128094583294	0	lncRNA	53604-1_{1..1577}	hg19_lincRNAsTranscripts_TCONS_l2_00026660 range=chr7:66018453-66038576 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026660 range=chr7:66018453-66038576 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 66018453	 66020029	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7548_PI429285431	0.9170391	A	1.1115828	A	0.873849235922556	0	lncRNA	9184-1_{1..983}	lnc-LRRN4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LRRN4-1:1	chr20	  5986419	  5987401	-	lnc-LRRN4-1	lnc-LRRN4-1:1	ENSG00000247862	AL035461.1	CRLS1	NA	chr20:5986739-5996467	inter
CUST_16883_PI429285431	5.3621817	P	5.7320933	P	0.77382991113561	0	lncRNA	18592-1_{1..411}	lnc-ARID2-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARID2-3:7	chr12	 46878241	 46878651	+	lnc-ARID2-3	lnc-ARID2-3:7	XLOC_009723	linc-FAM113B-3	NA	NA	NA	inter
CUST_40195_PI429285431	0.8945414	A	0.8899509	A	1.00318695972455	0	lncRNA	41027-2_{3001..5051}	n408014|NR_027774|lncRNA|Homosapiens||RefGeneNoncode|NR_027774||0.2856030|-0.2387937	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408014|NR_027774|lncRNA|Homosapiens||RefGeneNoncode|NR_027774||0.2856030|-0.2387937	chr17	   131327	   133377	-	NA	NA	NA	NA	RPH3AL	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80chr17:118327-193214"	NA	inner
CUST_44865_PI429285431	4.26835	P	3.6449013	P	1.54055340940486	0	lncRNA	49389-1_{1..2223}	"gi|29171303|ref|NR_001288.1| Homo sapiens transcription factor A, mitochondrial pseudogene 1 (TFAMP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|29171303|ref|NR_001288.1| Homo sapiens transcription factor A, mitochondrial pseudogene 1 (TFAMP1), non-coding RNA"	Chr7	  1654106	  1656328	+	260341	NR_001288.1	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	inter
CUST_41128_PI429285431	5.152179	P	5.566046	P	0.750608743118093	0	lncRNA	41904-1_{1..82}	ENST00000585066 ncrna:miRNA chromosome:GRCh37:22:19951276:19951357:1 gene:ENSG00000265087 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585066 ncrna:miRNA chromosome:GRCh37:22:19951276:19951357:1 gene:ENSG00000265087 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 19951276	 19951357	+	ENSG00000265087	ENST00000585066	NA	NA	COMT	NA	chr22:19941276-19957498	inner
CUST_28852_PI429285431	3.8280947	P	4.010007	P	0.881533743840009	0	lncRNA	30560-1_{1..2885}	n326267|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090406|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090406|1.0658500|-0.2550378	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326267|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090406|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090406|1.0658500|-0.2550378	chr1	203691679	203694563	+	NA	NA	NA	NA	ATP2B4	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.02;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.54;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50chr1:203681679-203713209"	NA	inner
CUST_14549_PI429285431	3.0638964	P	3.8487008	P	0.580430646405616	0	lncRNA	16217-1_{1..352}	lnc-ARL15-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARL15-3:1	chr5	 52811442	 52811793	-	lnc-ARL15-3	lnc-ARL15-3:1	XLOC_004820	linc-MOCS2-1	NA	NA	NA	inter
CUST_41138_PI429285431	1.9840138	A	2.467659	A	0.715168351921225	0	lncRNA	41924-1_{1..110}	ENST00000583906 ncrna:miRNA chromosome:GRCh37:HSCHR6_MHC_MANN:33329535:33329644:1 gene:ENSG00000266574 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583906 ncrna:miRNA chromosome:GRCh37:HSCHR6_MHC_MANN:33329535:33329644:1 gene:ENSG00000266574 gene_biotype:miRNA transcript_biotype:miRNA	chrHSCHR6_MHC_MANN	 33329535	 33329644	+	ENSG00000266574	ENST00000583906	NA	NA	NA	NA	NA	Unknown
CUST_27895_PI429285431	0.9011377	A	1.0454738	A	0.904795651009818	0	lncRNA	29490-1_{1..826}	n325133|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331840|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331840|-1.1315500|-0.2300188	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325133|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331840|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331840|-1.1315500|-0.2300188	chr2	138944695	138945520	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4919_PI429285431	0.92212296	A	0.9221219	A	1.00000073473628	0	lncRNA	4862-1_{1..744}	"transcript_id ""ENST00000557770.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557770.1"" | genecode_v17"	chr14	 83483450	 83484193	-	ENSG00000258600.1	ENST00000557770.1	RP11-452D21.2	RP11-452D21.2-001	NA	NA	NA	inter
CUST_3753_PI429285431	3.6279593	P	3.3608356	P	1.20340620439937	0	lncRNA	3722-1_{1..309}	"transcript_id ""ENST00000432108.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432108.1"" | genecode_v17"	chr10	 85671410	 85671718	-	ENSG00000233258.1	ENST00000432108.1	RP11-219F10.1	RP11-219F10.1-001	NA	NA	NA	inter
CUST_36383_PI429285431	1.3438354	A	1.0421375	A	1.23259419350606	0	lncRNA	37601-1_{1..1191}	n344900|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_449|NULL|-1.3189200|-0.1707991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344900|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_449|NULL|-1.3189200|-0.1707991	chr6	 41373556	 41374746	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42015_PI429285431	0.9254204	A	1.5463624	A	0.650246214295915	0	lncRNA	43871-1_{1..94}	ENST00000384887 ncrna:miRNA chromosome:GRCh37:5:168690605:168690698:-1 gene:ENSG00000207619 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384887 ncrna:miRNA chromosome:GRCh37:5:168690605:168690698:-1 gene:ENSG00000207619 gene_biotype:miRNA transcript_biotype:miRNA	chr5	168690605	168690698	-	ENSG00000207619	ENST00000384887	NA	NA	SLIT3	NA	chr5:168680605-168700698	inner
CUST_2814_PI429285431	10.675796	P	10.436415	P	1.1804860556459	0	lncRNA	2797-1_{1..710}	"transcript_id ""ENST00000580458.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580458.1"" | genecode_v17"	chr7	 45022633	 45023342	-	ENSG00000232956.3	ENST00000580458.1	SNHG15	SNHG15-008	MYO1G	NA	chr7:45012633-45018704	inter
CUST_51573_PI429285431	9.600461	P	9.440037	P	1.11761555076735	0	lncRNA	55138-1_{1..322}	hg19_lincRNAsTranscripts_TCONS_l2_00010603 range=chr17:19499054-19519146 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010603 range=chr17:19499054-19519146 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 19499054	 19499375	+	NA	NA	NA	NA	ALDH3A2	NA	chr17:19506587-19529146	inter
CUST_41291_PI429285431	0.9037414	A	0.9573934	A	0.963494275474554	0	lncRNA	42281-1_{1..71}	ENST00000362307 ncrna:miRNA chromosome:GRCh37:9:21512114:21512184:-1 gene:ENSG00000199177 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362307 ncrna:miRNA chromosome:GRCh37:9:21512114:21512184:-1 gene:ENSG00000199177 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 21512114	 21512184	-	ENSG00000199177	ENST00000362307	NA	NA	NA	NA	NA	inter
CUST_24042_PI429285431	7.4269233	P	7.1642275	P	1.19971838863409	0	lncRNA	25594-1_{1..351}	lnc-ATL3-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ATL3-1:5	chr11	 63533367	 63533717	-	lnc-ATL3-1	lnc-ATL3-1:5	ENSG00000188070.7	C11orf95	RTN3	NA	chr11:63523367-63527363	inner
LNCA_21_P0013264	1.48748	A	0.9200907	A	1.48183960693095	0	lncRNA	BC142949	NA	BC142949	NA	Hs.658551	XLOC_l2_013580	NA	NA	THC2504399	NA	"BROAD Institute lincRNA (XLOC_l2_013580), lincRNA [TCONS_l2_00026180]"	chr7:124783744-124783803	hs|7q31.33	Agilent_HUMAN_G3V2	BC142949	BC142949	chr7	124783744	124783803	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41303_PI429285431	5.0027328	P	5.050277	P	0.967581975777282	0	lncRNA	42306-1_{1..88}	ENST00000581038 ncrna:miRNA chromosome:GRCh37:10:126721352:126721439:-1 gene:ENSG00000264572 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581038 ncrna:miRNA chromosome:GRCh37:10:126721352:126721439:-1 gene:ENSG00000264572 gene_biotype:miRNA transcript_biotype:miRNA	chr10	126721352	126721439	-	ENSG00000264572	ENST00000581038	NA	NA	CTBP2	NA	chr10:126711352-126731439	inner
CUST_42249_PI429285431	7.5068765	P	7.8425407	P	0.792419232029271	0	lncRNA	44386-1_{1..71}	ENST00000387456 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:12266:12336:1 gene:ENSG00000210191 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000387456 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:12266:12336:1 gene:ENSG00000210191 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	chrMT	    12266	    12336	+	ENSG00000210191	ENST00000387456	NA	NA	NA	NA	NA	Unknown
CUST_16784_PI429285431	0.92145663	A	0.9100825	A	1.00791510627865	0	lncRNA	18493-1_{1..630}	lnc-C1orf186-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf186-2:1	chr1	206223506	206224135	-	lnc-C1orf186-2	lnc-C1orf186-2:1	XLOC_001170	linc-SLC26A9-1	AVPR1B	NA	chr1:206224283-206231482	inter
CUST_34212_PI429285431	3.975375	P	4.0015373	P	0.982029112946626	0	lncRNA	35725-1_{1..1453}	n341071|BC039543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3537|NULL|-1.1672300|-0.2365860	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341071|BC039543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3537|NULL|-1.1672300|-0.2365860	chr11	 76368099	 76369551	+	NA	NA	NA	NA	LRRC32	"hg19_refFlat_LRRC32:range=chr11:76370648-763769985'pad=0,hg19_refFlat_LRRC32:range=chr11:76370648-763769985'pad=0 3'pad=0 strand=- repeatMasking=none,-100.60chr11:76368568-76381791"	NA	inner
CUST_7157_PI429285431	0.9290726	A	0.9172411	A	1.00823469094447	0	lncRNA	7171-1_{1..232}	"transcript_id ""ENST00000516988.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516988.1"" | genecode_v17"	chr1	 90453272	 90453503	-	ENSG00000252797.1	ENST00000516988.1	RN7SKP272	RN7SKP272-201	ZNF326	NA	chr1:90460678-90463503	inter
CUST_20688_PI429285431	0.93108046	A	1.7534161	A	0.565525647751733	0	lncRNA	22324-1_{1..638}	lnc-UBLCP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBLCP1-3:1	chr5	158675358	158675995	+	lnc-UBLCP1-3	lnc-UBLCP1-3:1	ENSG00000253256.1	CTB-11I22.1	NA	NA	NA	inter
CUST_4903_PI429285431	2.2067041	A	2.451783	A	0.843769649686082	0	lncRNA	4845-1_{1..756}	"transcript_id ""ENST00000553991.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553991.1"" | genecode_v17"	chr14	 77388183	 77388938	-	ENSG00000259058.1	ENST00000553991.1	RP11-488C13.4	RP11-488C13.4-001	NA	NA	NA	inter
CUST_40133_PI429285431	0.9058807	A	0.9008761	A	1.00347494806122	0	lncRNA	40973-1_{1..3000}	n407722|NR_027240|lncRNA|Homosapiens||RefGeneNoncode|NR_027240||1.1095100|-0.1445414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407722|NR_027240|lncRNA|Homosapiens||RefGeneNoncode|NR_027240||1.1095100|-0.1445414	chr22	 46402495	 46405494	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.41;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
CUST_22977_PI429285431	2.913747	P	2.844937	A	1.04885118691255	0	lncRNA	24551-1_{1..692}	lnc-RP11-315O6.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-315O6.2.1-1:1	chr11	102332179	102332870	+	lnc-RP11-315O6.2.1-1	lnc-RP11-315O6.2.1-1:1	ENSG00000255337.1	RP11-315O6.1	TMEM123	NA	chr11:102322179-102323775	inter
CUST_39812_PI429285431	4.903112	P	5.3699665	P	0.723540410415055	0	lncRNA	40722-1_{1..852}	n406245|NR_003698|lncRNA|Homosapiens||RefGeneNoncode|NR_003698||1.2716800|-0.1251368	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406245|NR_003698|lncRNA|Homosapiens||RefGeneNoncode|NR_003698||1.2716800|-0.1251368	chr2	 96676298	 96677149	+	NA	NA	NA	NA	GPAT2	"hg19_refFlat_GPAT2:range=chr2:96687907-966981075'pad=0,hg19_refFlat_GPAT2:range=chr2:96687907-966981075'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00chr2:96687694-96698884"	NA	inner
LNCA_21_P0014442	1.7110493	A	3.5649939	P	0.276634960949484	0	lncRNA	XR_109826	XR_109826	XR_109826	NA	Hs.655864	LOC100507306	uncharacterized LOC100507306	NA	THC2553135	NA	"PREDICTED: Homo sapiens hypothetical LOC100507306 (LOC100507306), miscRNA [XR_109826]"	chr4:120370811-120370752	hs|4q26	Agilent_HUMAN_G3V2	XR_109826	XR_109826	chr4	120370752	120370811	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17966_PI429285431	0.944499	A	0.91493434	A	1.02070407698597	0	lncRNA	19699-1_{1..3000}	lnc-ECI2-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ECI2-2:6	chr6	  4347244	  4350243	-	lnc-ECI2-2	lnc-ECI2-2:6	XLOC_005589	linc-PECI-2	NA	NA	NA	inter
CUST_17913_PI429285431	5.19441	P	5.3528748	P	0.895977991525915	0	lncRNA	19644-1_{1..206}	lnc-SGCG-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SGCG-5:4	chr13	 23508603	 23508808	+	lnc-SGCG-5	lnc-SGCG-5:4	XLOC_010305	linc-SGCG-4	NA	NA	NA	inter
CUST_6179_PI429285431	7.5565643	P	7.745735	P	0.877109762769595	0	lncRNA	6104-1_{1..539}	"transcript_id ""ENST00000582689.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582689.1"" | genecode_v17"	chr18	 48872619	 48873157	+	ENSG00000227115.2	ENST00000582689.1	RP11-267C16.1	RP11-267C16.1-006	NA	NA	NA	inter
CUST_11009_PI429285431	1.022151	A	0.9096547	A	1.08109724520053	0	lncRNA	12554-1_{1..314}	lnc-AC073043.2.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC073043.2.1-1:4	chr2	200684295	200684608	-	lnc-AC073043.2.1-1	lnc-AC073043.2.1-1:4	XLOC_002452	linc-SATB2-2	NA	NA	NA	inter
CUST_11749_PI429285431	0.9113037	A	1.3257016	A	0.750332576043706	0	lncRNA	13329-1_{1..500}	lnc-ULBP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ULBP2-2:1	chr6	150256510	150257009	+	lnc-ULBP2-2	lnc-ULBP2-2:1	XLOC_005500	linc-ULBP2-2	ULBP2	NA	chr6:150263136-150266756	inter
CUST_24902_PI429285431	0.91663474	A	1.6406403	A	0.605414208765977	0	lncRNA	26443-1_{1..1225}	lnc-AKT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AKT1-1:1	chr14	105325379	105326603	-	lnc-AKT1-1	lnc-AKT1-1:1	ENSG00000258593.1	CTD-3051D23.4	KIAA0284	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-25.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90chr14:105331650-105335618"	NA	inter
CUST_13218_PI429285431	1.6150228	A	1.9266793	A	0.805716106040172	0	lncRNA	14846-1_{1..1501}	lnc-XRCC6BP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-XRCC6BP1-1:1	chr12	 58289435	 58290935	+	lnc-XRCC6BP1-1	lnc-XRCC6BP1-1:1	XLOC_009779	linc-XRCC6BP1	NA	NA	NA	inter
CUST_39818_PI429285431	0.9243668	A	0.91276175	A	1.00807644764167	0	lncRNA	40728-1_{1..2049}	n406298|NR_003951|lncRNA|Homosapiens||RefGeneNoncode|NR_003951||4.9570200|-0.1284088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406298|NR_003951|lncRNA|Homosapiens||RefGeneNoncode|NR_003951||4.9570200|-0.1284088	chr14	 70712469	 70714517	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21892_PI429285431	0.92693365	A	1.1048237	A	0.883994899102513	0	lncRNA	23501-1_{1..422}	lnc-ZNF678-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ZNF678-1:2	chr1	227613457	227613878	+	lnc-ZNF678-1	lnc-ZNF678-1:2	ENSG00000234277.2	CTD-2090I13.1	NA	NA	NA	inter
CUST_17624_PI429285431	1.6457148	A	1.8613088	A	0.861191508821964	0	lncRNA	19349-1_{1..697}	lnc-ANXA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANXA1-1:1	chr9	 75979582	 75980278	+	lnc-ANXA1-1	lnc-ANXA1-1:1	XLOC_007401	linc-RORB-8	NA	NA	NA	inter
CUST_2696_PI429285431	2.796781	A	2.1846712	A	1.52849284620014	0	lncRNA	2682-1_{1..332}	"transcript_id ""ENST00000413062.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413062.1"" | genecode_v17"	chr6	161294118	161294449	-	ENSG00000224371.1	ENST00000413062.1	RP11-235G24.1	RP11-235G24.1-003	NA	NA	NA	inter
LNCA_21_P0012131	2.764793	A	3.0842664	P	0.80136233052233	0	lncRNA	AK309218	NA	AK309218	NA	NA	XLOC_l2_008692	NA	NA	THC2525387	NA	"BROAD Institute lincRNA (XLOC_l2_008692), lincRNA [TCONS_l2_00016366]"	chr20:58713569-58713628	hs|20q13.33	Agilent_HUMAN_G3V2	AK309218	AK309218	chr20	 58713569	 58713628	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32574_PI429285431	1.2457373	A	1.4529692	A	0.866197611885154	0	lncRNA	34237-1_{1..1477}	n339191|BC034308|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1622|NULL|-0.4441410|-0.1524684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339191|BC034308|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1622|NULL|-0.4441410|-0.1524684	chr2	239143096	239144572	+	NA	NA	NA	NA	PER2	NA	chr2:239152679-239155847	inter
CUST_5718_PI429285431	2.7029657	A	2.212349	A	1.40504535350665	0	lncRNA	5642-1_{1..674}	"transcript_id ""ENST00000602597.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602597.1"" | genecode_v17"	chr17	  8181081	  8181754	+	ENSG00000269947.1	ENST00000602597.1	RP11-849F2.9	RP11-849F2.9-001	SLC25A35	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70chr17:8191082-8191754"	NA	inter
CUST_21634_PI429285431	0.9189383	A	0.90801954	A	1.00759701973812	0	lncRNA	23246-1_{1..367}	lnc-SPARCL1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPARCL1-1:3	chr4	 88594142	 88594508	-	lnc-SPARCL1-1	lnc-SPARCL1-1:3	ENSG00000249001.1	RP11-742B18.1	DMP1	NA	chr4:88584142-88585513	inter
CUST_14119_PI429285431	0.96612513	A	0.9194059	A	1.0329133477592	0	lncRNA	15768-1_{1..576}	lnc-ST3GAL5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ST3GAL5-1:2	chr2	 86131681	 86132256	-	lnc-ST3GAL5-1	lnc-ST3GAL5-1:2	XLOC_002192	linc-ST3GAL5-2	NA	NA	NA	inter
CUST_27714_PI429285431	1.1928327	A	1.2136029	A	0.985706332887624	0	lncRNA	29294-1_{1..620}	n324926|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000268116|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000268116|-1.1187700|-0.2129761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324926|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000268116|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000268116|-1.1187700|-0.2129761	chr20	 57369376	 57369995	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5151_PI429285431	1.1749383	A	1.2366227	A	0.958144796419429	0	lncRNA	5091-1_{1..405}	"transcript_id ""ENST00000558897.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558897.1"" | genecode_v17"	chr15	 38332594	 38332998	+	ENSG00000259225.2	ENST00000558897.1	RP11-1008C21.1	RP11-1008C21.1-004	NA	NA	NA	inter
CUST_47125_PI429285431	5.903997	P	6.5011954	P	0.661036390331062	0	lncRNA	51206-1_{1..576}	"gi|397139728|ref|XR_158938.1| PREDICTED: Homo sapiens interleukin-like (LOC723805), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139728|ref|XR_158938.1| PREDICTED: Homo sapiens interleukin-like (LOC723805), misc_RNA"	Chr19	 39930207	 39930782	+	723805	XR_158938.2	NA	NA	NA	NA	NA	inter
CUST_24323_PI429285431	1.0654263	A	1.2467976	A	0.881864374480509	0	lncRNA	25876-1_{1..523}	lnc-CD300LF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CD300LF-1:1	chr17	 72673488	 72674010	-	lnc-CD300LF-1	lnc-CD300LF-1:1	ENSG00000264659.1	CTD-2006K23.2	RAB37	NA	chr17:72667256-72683739	inner
CUST_43685_PI429285431	0.9045242	A	0.9070953	A	0.9982194363717	0	lncRNA	48437-1_{1..673}	"gi|336088670|ref|NR_038424.1| Homo sapiens microtubule-associated protein 1 light chain 3 beta pseudogene (LOC100288079), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|336088670|ref|NR_038424.1| Homo sapiens microtubule-associated protein 1 light chain 3 beta pseudogene (LOC100288079), non-coding RNA"	Chr1	185292978	185293650	-	100288079	NR_038424.1	NA	NA	NA	NA	NA	inter
CUST_10171_PI429285431	1.1625597	A	0.9156371	A	1.18667313141964	0	lncRNA	11696-1_{1..470}	lnc-ALG14-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALG14-3:1	chr1	 95783704	 95784173	-	lnc-ALG14-3	lnc-ALG14-3:1	XLOC_000927	linc-ALG14-1	NA	NA	NA	inter
CUST_1355_PI429285431	0.915617	A	2.4675066	A	0.34106305704262	0	lncRNA	1343-1_{1..563}	"transcript_id ""ENST00000472238.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000472238.1"" | genecode_v17"	chr3	 55527858	 55528420	-	ENSG00000242317.1	ENST00000472238.1	RP11-875H7.5	RP11-875H7.5-001	ERC2	NA	chr3:55542336-55549289	inter
CUST_25008_PI429285431	0.92368954	A	0.921054	A	1.00182848676721	0	lncRNA	26548-1_{1..467}	lnc-APOH-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-APOH-1:2	chr17	 64412661	 64413127	-	lnc-APOH-1	lnc-APOH-1:2	ENSG00000264630.1	RP11-4F22.2	PRKCA	NA	chr17:64402661-64422909	inner
CUST_43753_PI429285431	0.909847	A	0.90624136	A	1.00250236490182	0	lncRNA	48491-1_{1..612}	"gi|300360572|ref|NR_034037.1| Homo sapiens long intergenic non-protein coding RNA 582 (LINC00582), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300360572|ref|NR_034037.1| Homo sapiens long intergenic non-protein coding RNA 582 (LINC00582), non-coding RNA"	Chr1	231727038	231727649	-	100287814	NR_034037.1	NA	NA	NA	NA	NA	inter
CUST_4185_PI429285431	1.1538196	A	1.734197	A	0.668788803539658	0	lncRNA	4144-1_{1..779}	"transcript_id ""ENST00000593117.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593117.1"" | genecode_v17"	chr12	 23012465	 23013243	+	ENSG00000256995.2	ENST00000593117.1	RP11-114G22.1	RP11-114G22.1-007	NA	NA	NA	inter
LNCA_21_P0009127	5.1306057	P	5.870574	P	0.59875250841346	0	lncRNA	TCONS_00025033	NA	NA	NA	NA	XLOC_011976	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011976), lincRNA [TCONS_00025033]"	chr16:65175631-65175572	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00025033	TCONS_00025033	chr16	 65175572	 65175631	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_127_PI429285431	4.1339235	P	3.3360364	P	1.73855306209741	0	lncRNA	119-1_{1..1317}	"transcript_id ""ENST00000473798.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000473798.1"" | genecode_v17"	chr1	   761586	   762902	-	ENSG00000225880.4	ENST00000473798.1	LINC00115	LINC00115-001	NA	NA	NA	inter
CUST_44114_PI429285431	0.9022807	A	0.95502114	A	0.964103247117707	0	lncRNA	48780-1_{1..1125}	"gi|201023356|ref|NR_024133.1| Homo sapiens ghrelin/obestatin prepropeptide (GHRL), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|201023356|ref|NR_024133.1| Homo sapiens ghrelin/obestatin prepropeptide (GHRL), transcript variant 8, non-coding RNA"	Chr3	 10327434	 10328558	-	51738	NR_024133.1	NA	NA	NA	NA	NA	inter
CUST_2110_PI429285431	1.3029541	A	1.3063031	A	0.997681342341382	0	lncRNA	2101-1_{1..440}	"transcript_id ""ENST00000507674.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507674.1"" | genecode_v17"	chr5	 23013157	 23013596	+	ENSG00000249404.1	ENST00000507674.1	CTD-2234B20.1	CTD-2234B20.1-001	NA	NA	NA	inter
LNCA_21_P0001308	0.946759	A	0.9234656	A	1.01627680156484	0	lncRNA	TCONS_00000960	NA	NA	NA	NA	XLOC_000218	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000218), lincRNA [TCONS_00000960]"	chr1:59184598-59184657	hs|1p32.1	Agilent_HUMAN_G3V2	TCONS_00000960	TCONS_00000960	chr1	 59184598	 59184657	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5522_PI429285431	0.90812016	A	1.1906317	A	0.82215850222207	0	lncRNA	5453-1_{1..2626}	"transcript_id ""ENST00000569726.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569726.1"" | genecode_v17"	chr16	 47892490	 47895115	+	ENSG00000261231.2	ENST00000569726.1	RP11-523L20.2	RP11-523L20.2-002	NA	NA	NA	inter
CUST_3003_PI429285431	3.262942	P	3.3949635	P	0.912551888987585	0	lncRNA	2982-1_{1..545}	"transcript_id ""ENST00000522129.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522129.1"" | genecode_v17"	chr8	  9232408	  9232952	-	ENSG00000254237.1	ENST00000522129.1	RP11-115J16.2	RP11-115J16.2-001	NA	NA	NA	inter
CUST_17117_PI429285431	9.343427	P	9.518183	P	0.885917339782506	0	lncRNA	18827-1_{1..965}	lnc-BPHL-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BPHL-2:3	chr6	  3257557	  3258521	+	lnc-BPHL-2	lnc-BPHL-2:3	XLOC_005133	linc-PSMG4	PSMG4	NA	chr6:3259162-3268300	inter
CUST_4975_PI429285431	1.5089636	A	0.9441671	A	1.47917884829288	0	lncRNA	4919-1_{1..445}	"transcript_id ""ENST00000554445.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554445.1"" | genecode_v17"	chr14	 97621194	 97621638	+	ENSG00000259110.1	ENST00000554445.1	RP11-359N5.1	RP11-359N5.1-001	NA	NA	NA	inter
CUST_38083_PI429285431	1.7771626	A	2.4490173	A	0.627699210735352	0	lncRNA	39159-1_{1..2093}	n381072|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001bcf.1||-0.0642470|-0.2308806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381072|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001bcf.1||-0.0642470|-0.2308806	chr1	 19673334	 19675426	-	NA	NA	NA	NA	CAPZB	"hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-17.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80chr1:19665267-19685427"	NA	inter
CUST_16079_PI429285431	5.5653334	P	6.061444	P	0.709015661142169	0	lncRNA	17782-1_{1..2987}	lnc-MEIS2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MEIS2-1:3	chr15	 37178622	 37181608	-	lnc-MEIS2-1	lnc-MEIS2-1:3	XLOC_011427	linc-ATPBD4-2	MEIS2	NA	chr15:37183222-37188734	inter
CUST_10807_PI429285431	1.357224	A	1.1960835	A	1.1181707411575	0	lncRNA	12344-1_{1..3000}	lnc-ARFGEF2-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ARFGEF2-2:7	chr20	 47132105	 47135104	+	lnc-ARFGEF2-2	lnc-ARFGEF2-2:7	XLOC_013553	linc-ARFGEF2-2	NA	NA	NA	inter
CUST_22641_PI429285431	7.066524	P	5.748705	P	2.49288961189771	0	lncRNA	24227-1_{1..515}	lnc-ARSD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARSD-1:1	chrX	  2771557	  2772071	-	lnc-ARSD-1	lnc-ARSD-1:1	ENSG00000235483.1	GYG2-AS1	GYG2	NA	chrX:2761557-2781801	inner
CUST_5622_PI429285431	0.91663134	A	0.91729116	A	0.999542752196977	0	lncRNA	5550-1_{1..491}	"transcript_id ""ENST00000563923.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563923.1"" | genecode_v17"	chr16	 76170020	 76170510	-	ENSG00000260223.1	ENST00000563923.1	RP11-293N14.1	RP11-293N14.1-001	NA	NA	NA	inter
CUST_243_PI429201921	8.059735	P	8.048692	P	1.0076837943097	0	lncRNA	185-2_{3001..6000}	TC20001207.hg.1	TCONS_l2_00016765-XLOC_l2_008619 // Broad TUCP // linc-CTNNBL1-1 chr20:+:36305311-36311636 // chr20 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00016245-XLOC_l2_008619 // Broad TUCP // linc-CTNNBL1-1 chr20:+:36306777-36311547 // chr20 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr20:+:36305311-36311636	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00016765-XLOC_l2_008619	linc-CTNNBL1-1	chr20	 36305311	 36311636	+	NA	NA	NA	NA	SRSF4	NA	chr1:29474250-29483506	Unknown
CUST_25392_PI429285431	3.608707	P	4.3678746	P	0.590837131063569	0	lncRNA	26923-1_{1..406}	lnc-RBM48-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBM48-1:3	chr7	 92546151	 92546556	+	lnc-RBM48-1	lnc-RBM48-1:3	ENSG00000237819.1	AC002454.1	NA	NA	NA	inter
CUST_17680_PI429285431	6.8852453	P	6.4245024	P	1.37625032072582	0	lncRNA	19409-1_{1..212}	lnc-AC027763.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC027763.2.1-1:1	chr17	  6923118	  6923329	-	lnc-AC027763.2.1-1	lnc-AC027763.2.1-1:1	XLOC_012373	linc-TEKT1-1	BCL6B	NA	chr17:6926369-6932961	inter
CUST_180_PI429201921	5.4373503	P	5.3807964	P	1.03997864192796	0	lncRNA	149-1_{1..3000}	TC17002275.hg.1	TCONS_l2_00011572-XLOC_l2_005826 // Broad TUCP // linc-NME1-3 chr17:+:49021464-49025188 // chr17 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00011573-XLOC_l2_005826 // Broad TUCP // linc-NME1-3 chr17:+:49021474-49026111 // chr17 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr17:+:49021464-49025188	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00011572-XLOC_l2_005826	linc-NME1-3	chr17	 49021464	 49025188	+	NA	NA	NA	NA	RERE	NA	chr1:8855919-8877110	Unknown
CUST_38729_PI429285431	0.9055966	A	0.8992951	A	1.00437741999291	0	lncRNA	39724-1_{1..3000}	n384231|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003can.2||-0.1070410|-0.3911618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384231|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003can.2||-0.1070410|-0.3911618	chr3	 15781726	 15784725	+	NA	NA	NA	NA	ANKRD28	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10chr3:15771726-15813693"	NA	inner
CUST_15538_PI429285431	0.92752147	A	1.250601	A	0.799361763525074	0	lncRNA	17223-1_{1..366}	lnc-UBE2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBE2A-1:1	chrX	118707606	118707971	+	lnc-UBE2A-1	lnc-UBE2A-1:1	XLOC_008054	linc-UBE2A	CXorf56	NA	chrX:118697606-118699397	inter
CUST_21178_PI429285431	1.3741747	A	1.0180104	A	1.28001817923896	0	lncRNA	22803-1_{1..468}	lnc-FOXG1-6:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXG1-6:14	chr14	 27275442	 27275909	+	lnc-FOXG1-6	lnc-FOXG1-6:14	ENSG00000257842.1	NOVA1-AS1	NA	NA	NA	inter
CUST_2305_PI429285431	0.91171604	A	0.91484207	A	0.997835546933241	0	lncRNA	2297-1_{1..744}	"transcript_id ""ENST00000505002.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505002.1"" | genecode_v17"	chr5	108806544	108807287	+	ENSG00000248876.1	ENST00000505002.1	RP11-231G15.3	RP11-231G15.3-001	NA	NA	NA	inter
LNCA_21_P0003437	0.92673206	A	0.91188854	A	1.01034185515715	0	lncRNA	ENST00000503637	NA	NA	NA	NA	XLOC_003825	NA	ENST00000503637	NA	NA	"BROAD Institute lincRNA (XLOC_003825), lincRNA [TCONS_00007693]"	chr4:188124672-188124731	hs|4q35.2	Agilent_HUMAN_G3V2	ENST00000503637	ENST00000503637	chr4	188124672	188124731	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13794_PI429285431	1.4490523	A	1.7705785	A	0.80022288889034	0	lncRNA	15436-1_{1..2444}	lnc-FER-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FER-1:1	chr5	108063807	108066250	+	lnc-FER-1	lnc-FER-1:1	XLOC_004501	linc-FER-1	LOC100652853	NA	chr5:108063524-108064130	inter
CUST_34655_PI429285431	2.1158438	A	3.369122	P	0.419493918253748	0	lncRNA	36108-1_{1..1581}	n341556|CR590356|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4027|NULL|-1.0013100|-0.2011955	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341556|CR590356|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4027|NULL|-1.0013100|-0.2011955	chr8	 90729655	 90731235	-	NA	NA	NA	NA	RIPK2	NA	chr8:90769975-90779939	inter
CUST_3790_PI429285431	5.905484	P	6.04038	P	0.910735483693888	0	lncRNA	3758-1_{1..386}	"transcript_id ""ENST00000593666.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593666.1"" | genecode_v17"	chr10	109520581	109520966	-	ENSG00000229981.2	ENST00000593666.1	RP11-215N21.1	RP11-215N21.1-012	LOC100128304	NA	chr10:109673555-109675061	inter
LNCA_21_P0001672	0.9243747	A	0.90877384	A	1.0108723714145	0	lncRNA	TCONS_00001987	NA	NA	NA	NA	XLOC_000147	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000147), lincRNA [TCONS_00001987]"	chr1:38628124-38628183	hs|1p34.3	Agilent_HUMAN_G3V2	TCONS_00001987	TCONS_00001987	chr1	 38628124	 38628183	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35062_PI429285431	0.91116154	A	0.96950036	A	0.960369292694785	0	lncRNA	36472-1_{1..1319}	n342011|CR614432|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4492|NULL|-1.0367800|-0.2784706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342011|CR614432|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4492|NULL|-1.0367800|-0.2784706	chr12	107727719	107729037	+	NA	NA	NA	NA	BTBD11	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80chr12:107717719-107739038"	NA	inner
CUST_28173_PI429285431	1.157382	A	0.90375644	A	1.19219940631823	0	lncRNA	29799-1_{1..2131}	n325451|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323346|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323346|-0.9494930|-0.2654919	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325451|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323346|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323346|-0.9494930|-0.2654919	chr2	  6786750	  6788880	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11067_PI429285431	1.1397715	A	0.9149638	A	1.16862147004944	0	lncRNA	12618-1_{1..520}	lnc-UBE2B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBE2B-1:1	chr5	133737364	133737883	+	lnc-UBE2B-1	lnc-UBE2B-1:1	XLOC_004557	linc-PHF15-3	UBE2B	NA	chr5:133727364-133727799	inter
CUST_22791_PI429285431	0.91133904	A	0.90757847	A	1.00261002870257	0	lncRNA	24371-1_{1..428}	lnc-ADAM12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAM12-1:1	chr10	127661531	127661958	-	lnc-ADAM12-1	lnc-ADAM12-1:1	ENSG00000233409.1	FANK1-AS1	FANK1	NA	chr10:127651531-127671695	inner
CUST_9565_PI429285431	0.9106558	A	0.91001964	A	1.00044104974423	0	lncRNA	11080-1_{1..304}	lnc-FAM160A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM160A1-1:1	chr4	152591443	152591746	+	lnc-FAM160A1-1	lnc-FAM160A1-1:1	XLOC_003734	linc-ARFIP1-8	FAM160A1	NA	chr4:152581443-152584784	inter
CUST_42351_PI429285431	7.3251534	P	7.32051	P	1.0032237447426	0	lncRNA	45015-1_{1..80}	ENST00000517285 ncrna:snoRNA chromosome:GRCh37:13:23377284:23377363:1 gene:ENSG00000253094 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517285 ncrna:snoRNA chromosome:GRCh37:13:23377284:23377363:1 gene:ENSG00000253094 gene_biotype:snoRNA transcript_biotype:snoRNA	chr13	 23377284	 23377363	+	ENSG00000253094	ENST00000517285	NA	NA	NA	NA	NA	inter
CUST_17175_PI429285431	0.91805017	A	0.9154362	A	1.00181350835645	0	lncRNA	18886-1_{1..326}	lnc-FAM83A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM83A-1:1	chr8	124478223	124478548	+	lnc-FAM83A-1	lnc-FAM83A-1:1	XLOC_006912	linc-FAM91A1-3	NA	NA	NA	inter
CUST_16113_PI429285431	4.269904	P	4.528374	P	0.835974012623379	0	lncRNA	17819-1_{1..1063}	lnc-C6orf118-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C6orf118-1:2	chr6	165235427	165236489	-	lnc-C6orf118-1	lnc-C6orf118-1:2	XLOC_005915	linc-PARK2-4	NA	NA	NA	inter
CUST_15519_PI429285431	2.3271797	A	2.9011295	A	0.67177508753217	0	lncRNA	17205-1_{1..709}	lnc-FAIM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-FAIM2-1:1	chr12	 50305597	 50306305	-	lnc-FAIM2-1	lnc-FAIM2-1:1	XLOC_010072	linc-FAIM2-2	FAIM2	NA	chr12:50295597-50297760	inter
LNCA_21_P0010702	4.0512156	P	3.7192965	P	1.25868658991143	0	lncRNA	ENST00000454285	NA	NA	NA	NA	XLOC_l2_000192	NA	ENST00000454285	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000192), lincRNA [TCONS_l2_00002041]"	chr1:48168873-48168932	hs|1p33	Agilent_HUMAN_G3V2	ENST00000454285	ENST00000454285	chr1	 48168873	 48168932	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4423_PI429285431	0.9262773	A	0.9121253	A	1.00985768895348	0	lncRNA	4373-1_{1..497}	"transcript_id ""ENST00000546414.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546414.1"" | genecode_v17"	chr12	116248164	116248660	-	ENSG00000257683.1	ENST00000546414.1	RP11-110L15.2	RP11-110L15.2-001	NA	NA	NA	inter
CUST_15411_PI429285431	4.6061115	P	4.59247	P	1.00950041237362	0	lncRNA	17097-1_{1..250}	lnc-FAM135B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM135B-2:1	chr8	137817353	137817602	-	lnc-FAM135B-2	lnc-FAM135B-2:1	XLOC_007237	linc-ZFAT-6	NA	NA	NA	inter
CUST_7213_PI429285431	0.89587915	A	0.8893584	A	1.00453006935875	0	lncRNA	7644-1_{1..244}	"transcript_id ""ENST00000515933.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515933.1"" | genecode_v17"	chr4	182756018	182756261	-	ENSG00000251742.1	ENST00000515933.1	RN7SKP13	RN7SKP13-201	NA	NA	NA	inter
CUST_27382_PI429285431	12.0878315	P	12.117833	P	0.97941927926383	0	lncRNA	28944-1_{1..612}	n324544|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257856|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257856|-0.0620427|-0.1175910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324544|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257856|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257856|-0.0620427|-0.1175910	chr6	 31105667	 31106278	+	NA	NA	NA	NA	PSORS1C1	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_PSORS1C2:range=chr6_mann_hap4:2454096-24551715'pad=0,hg19_refFlat_PSORS1C2:range=chr6_mann_hap4:2454096-24551715'pad=0 3'pad=0 strand=- repeatMasking=none,-104.30;hg19_refFlat_PSORS1C2:range=chr6_mcf_hap5:2487673-24887485'pad=0,hg19_refFlat_PSORS1C2:range=chr6_mcf_hap5:2487673-24887485'pad=0 3'pad=0 strand=- repeatMasking=none,-104.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PSORS1C2:range=chr6:31105728-311068035'pad=0,hg19_refFlat_PSORS1C2:range=chr6:31105728-311068035'pad=0 3'pad=0 strand=- repeatMasking=none,-104.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PSORS1C2:range=chr6_dbb_hap3:2402866-24039415'pad=0,hg19_refFlat_PSORS1C2:range=chr6_dbb_hap3:2402866-24039415'pad=0 3'pad=0 strand=- repeatMasking=none,-104.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PSORS1C2:range=chr6_cox_hap2:2620450-26215255'pad=0,hg19_refFlat_PSORS1C2:range=chr6_cox_hap2:2620450-26215255'pad=0 3'pad=0 strand=- repeatMasking=none,-104.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-31.60;hg19_refFlat_PSORS1C2:range=chr6_qbl_hap6:2401574-24026485'pad=0,hg19_refFlat_PSORS1C2:range=chr6_qbl_hap6:2401574-24026485'pad=0 3'pad=0 strand=- repeatMasking=none,-104.30chr6:31095667-31107869"	NA	inner
CUST_3108_PI429285431	0.9147495	A	1.1372715	A	0.85706587452697	0	lncRNA	3088-1_{1..865}	"transcript_id ""ENST00000518261.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518261.1"" | genecode_v17"	chr8	 56438745	 56439609	+	ENSG00000253151.1	ENST00000518261.1	RP11-628E19.3	RP11-628E19.3-001	XKR4	NA	chr8:56428745-56438714	inter
CUST_41811_PI429285431	7.9674883	P	8.223985	P	0.8371182296316	0	lncRNA	43403-1_{1..84}	ENST00000584598 ncrna:miRNA chromosome:GRCh37:5:56777647:56777730:-1 gene:ENSG00000264748 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584598 ncrna:miRNA chromosome:GRCh37:5:56777647:56777730:-1 gene:ENSG00000264748 gene_biotype:miRNA transcript_biotype:miRNA	chr5	 56777647	 56777730	-	ENSG00000264748	ENST00000584598	NA	NA	ACTBL2	NA	chr5:56775843-56778636	inner
CUST_33844_PI429285431	5.003365	P	5.048157	P	0.969429573994314	0	lncRNA	35390-2_{3001..6000}	n340631|D87076|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3093|NULL|9.2830400|-0.1678169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340631|D87076|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3093|NULL|9.2830400|-0.1678169	chr5	133864797	133867796	+	NA	NA	NA	NA	PHF15	NA	chr5:133861798-133918918	inner
CUST_21395_PI429285431	1.3355318	A	0.91035944	A	1.34273291063757	0	lncRNA	23017-1_{1..583}	lnc-CCDC34-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC34-1:1	chr11	 27241594	 27242176	-	lnc-CCDC34-1	lnc-CCDC34-1:1	ENSG00000254560.1	RP11-1L12.3	NA	NA	NA	inter
CUST_24588_PI429285431	2.8936028	A	2.6734679	A	1.16484250062045	0	lncRNA	26137-1_{1..1457}	lnc-CDH6-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-CDH6-2:4	chr5	 29172150	 29173606	+	lnc-CDH6-2	lnc-CDH6-2:4	ENSG00000259786.1	CTD-2118P12.1	NA	"hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30"	NA	inter
CUST_25014_PI429285431	2.789153	A	2.9199057	P	0.913354799579036	0	lncRNA	26554-1_{1..583}	lnc-PAX8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAX8-1:1	chr2	113932847	113933429	-	lnc-PAX8-1	lnc-PAX8-1:1	ENSG00000234174.1	AC016683.5	PSD4	NA	chr2:113931560-113942937	inner
CUST_36180_PI429285431	0.89487374	A	1.0945913	A	0.870721009831117	0	lncRNA	37448-3_{6001..9000}	n344736|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_285|NULL|-1.6131600|-0.3223694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344736|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_285|NULL|-1.6131600|-0.3223694	chrX	 45610650	 45613649	-	NA	NA	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-22.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10"	NA	inter
CUST_12606_PI429285431	1.7373494	A	1.4619417	A	1.21033607715656	0	lncRNA	14219-1_{1..554}	lnc-LRP5L-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRP5L-2:3	chr22	 25960703	 25961256	-	lnc-LRP5L-2	lnc-LRP5L-2:3	XLOC_014323	linc-LRP5L-1	ADRBK2	NA	chr22:25960861-25970715	inter
LNCA_21_P0012379	10.842515	P	11.003242	P	0.894574165303314	0	lncRNA	XR_132460	XR_132460	XR_132460	NA	NA	DUX4L9	double homeobox 4 like 9	NA	NA	GO:0010468|GO:0005515|GO:0000976|GO:0008283|GO:0005634	"PREDICTED: Homo sapiens double homeobox 4 like 9 (DUX4L9), miscRNA [XR_132460]"	chr4:190940645-190940586	hs|4q35.2	Agilent_HUMAN_G3V2	XR_132460	XR_132460	chr4	190940586	190940645	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12378_PI429285431	3.1805477	A	3.4635954	A	0.821853013820393	0	lncRNA	13990-1_{1..679}	lnc-TTC14-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC14-2:3	chr3	180139875	180140553	+	lnc-TTC14-2	lnc-TTC14-2:3	XLOC_002937	linc-TTC14	NA	NA	NA	inter
CUST_42604_PI429285431	2.1635332	A	2.4393678	A	0.8259723543833	0	lncRNA	45463-1_{1..129}	ENST00000383966 ncrna:snoRNA chromosome:GRCh37:X:154003273:154003401:1 gene:ENSG00000206693 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000383966 ncrna:snoRNA chromosome:GRCh37:X:154003273:154003401:1 gene:ENSG00000206693 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	154003273	154003401	+	ENSG00000206693	ENST00000383966	NA	NA	MPP1	NA	chrX:154006959-154013401	inner
CUST_21714_PI429285431	3.063773	P	3.253049	P	0.8770457462693	0	lncRNA	23324-1_{1..1388}	lnc-C21orf90-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C21orf90-1:1	chr21	 45935380	 45936767	+	lnc-C21orf90-1	lnc-C21orf90-1:1	ENSG00000235890.1	TSPEAR-AS1	TSPEAR	"hg19_refFlat_TSPEAR:range=chr21:45919666-459877675'pad=0,hg19_refFlat_TSPEAR:range=chr21:45919666-459877675'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40;hg19_refFlat_TSPEAR:range=chr21:45919666-461314295'pad=0,hg19_refFlat_TSPEAR:range=chr21:45919666-461314295'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40chr21:45925380-45945738"	NA	inner
CUST_31708_PI429285431	3.0024195	A	4.027335	P	0.491439082477107	0	lncRNA	33451-1_{1..416}	n338237|AF005081|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|629|NULL|2.1360000|-0.1132511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338237|AF005081|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|629|NULL|2.1360000|-0.1132511	chr1	152692385	152692800	+	NA	NA	NA	NA	C1orf68	NA	chr1:152691998-152692905	inner
CUST_37296_PI429285431	1.2869515	A	1.3408191	A	0.963350299208693	0	lncRNA	38404-1_{1..247}	n345738|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1287|NULL|-1.3629300|-0.2441300	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345738|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1287|NULL|-1.3629300|-0.2441300	chr2	 67548936	 67549182	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18869_PI429285431	7.709098	P	7.495758	P	1.15936914828625	0	lncRNA	20562-1_{1..2743}	lnc-SPATA21-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPATA21-2:2	chr1	 16939833	 16942575	-	lnc-SPATA21-2	lnc-SPATA21-2:2	ENSG00000219481	NBPF1	NBPF1	NA	chr1:16929833-16939982	inner
CUST_19397_PI429285431	1.2875264	A	0.9128508	A	1.29654798405218	0	lncRNA	21059-1_{1..491}	lnc-TIAL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIAL1-1:1	chr10	121484121	121484611	-	lnc-TIAL1-1	lnc-TIAL1-1:1	ENSG00000224489.1	RP11-179H18.8	INPP5F	"hg19_refFlat_BAG3:range=chr10:121411188-1214367945'pad=0,hg19_refFlat_BAG3:range=chr10:121411188-1214367945'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.00chr10:121485609-121494200"	NA	inter
CUST_47765_PI429285431	2.433865	A	2.0635357	A	1.29264784818996	0	lncRNA	51700-2_{3001..6000}	"gi|385137107|ref|NR_047645.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 75, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137107|ref|NR_047645.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 75, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047645.1	NA	NA	NA	NA	NA	inter
CUST_1227_PI429285431	0.9256404	A	0.9265492	A	0.999370266207914	0	lncRNA	1219-1_{1..403}	"transcript_id ""ENST00000453965.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453965.1"" | genecode_v17"	chr2	213660064	213660466	+	ENSG00000234308.1	ENST00000453965.1	AC093381.2	AC093381.2-001	NA	NA	NA	inter
CUST_8959_PI429285431	0.923028	A	0.9163102	A	1.004667282119	0	lncRNA	10493-1_{1..249}	lnc-CTH-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CTH-6:4	chr1	 71702813	 71703061	+	lnc-CTH-6	lnc-CTH-6:4	ENSG00000229956	RP11-386O9.1	NA	NA	NA	inter
CUST_42720_PI429285431	0.90479136	A	0.89905316	A	1.00398533757255	0	lncRNA	45657-1_{1..115}	ENST00000574449 ncrna:snoRNA chromosome:GRCh37:HSCHR5_3_CTG1:29079491:29079605:1 gene:ENSG00000261955 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000574449 ncrna:snoRNA chromosome:GRCh37:HSCHR5_3_CTG1:29079491:29079605:1 gene:ENSG00000261955 gene_biotype:snoRNA transcript_biotype:snoRNA	chrHSCHR5_3_CTG1	 29079491	 29079605	+	ENSG00000261955	ENST00000574449	NA	NA	NA	NA	NA	Unknown
CUST_20526_PI429285431	5.9157734	P	5.912416	P	1.00232988231135	0	lncRNA	22168-1_{1..374}	lnc-C21orf90-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C21orf90-1:2	chr21	 45935380	 45935753	+	lnc-C21orf90-1	lnc-C21orf90-1:2	ENSG00000235890.1	TSPEAR-AS1	TSPEAR	NA	chr21:45925380-45945506	inner
CUST_2709_PI429285431	2.097947	A	2.407513	A	0.806884454438926	0	lncRNA	2694-1_{1..1035}	"transcript_id ""ENST00000456477.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456477.1"" | genecode_v17"	chr6	166513153	166514187	+	ENSG00000231297.1	ENST00000456477.1	RP11-459F1.2	RP11-459F1.2-001	NA	NA	NA	inter
CUST_25783_PI429285431	0.9139817	A	1.0908606	A	0.88461468688128	0	lncRNA	27305-2_{3001..5187}	lnc-RBFA-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RBFA-1:5	chr18	 77833238	 77835424	+	lnc-RBFA-1	lnc-RBFA-1:5	ENSG00000261126.1	RP11-795F19.1	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70"	NA	inter
CUST_28534_PI429285431	7.7875123	P	8.042591	P	0.837941423144124	0	lncRNA	30205-1_{1..2381}	n325882|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050558|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050558|-0.0583464|-0.2791933	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325882|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050558|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050558|-0.0583464|-0.2791933	chr10	118908156	118910536	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-64.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10"	NA	inter
CUST_10714_PI429285431	3.7498808	P	4.3123007	P	0.677165369383605	0	lncRNA	12250-1_{1..1182}	lnc-NRP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NRP1-1:1	chr10	 33405399	 33406580	-	lnc-NRP1-1	lnc-NRP1-1:1	XLOC_008774	linc-ITGB1	NA	NA	NA	inter
CUST_31263_PI429285431	0.90740955	A	0.90063775	A	1.00470488746665	0	lncRNA	33053-1_{1..1986}	n337720|AK026705|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|102|NULL|3.1226800|-0.2347879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337720|AK026705|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|102|NULL|3.1226800|-0.2347879	chr1	 12806166	 12808151	+	NA	NA	NA	NA	C1orf158	NA	chr1:12806163-12821102	inner
CUST_37544_PI429285431	0.91527516	A	0.90508264	A	1.00708993189925	0	lncRNA	38650-1_{1..1745}	n346022|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1572|NULL|-1.6171800|-0.3131021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346022|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1572|NULL|-1.6171800|-0.3131021	chr3	 34262109	 34263853	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.36;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
CUST_42922_PI429285431	1.465121	A	1.3856415	A	1.05663675509286	0	lncRNA	46026-1_{1..84}	ENST00000459623 ncrna:snoRNA chromosome:GRCh37:3:52724760:52724843:1 gene:ENSG00000238862 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459623 ncrna:snoRNA chromosome:GRCh37:3:52724760:52724843:1 gene:ENSG00000238862 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	 52724760	 52724843	+	ENSG00000238862	ENST00000459623	NA	NA	PBRM1	NA	chr3:52714760-52719866	inner
CUST_11525_PI429285431	5.609259	P	5.681817	P	0.950950400280994	0	lncRNA	13095-1_{1..1167}	lnc-AL359392.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL359392.1-1:1	chr13	 76457186	 76458352	+	lnc-AL359392.1-1	lnc-AL359392.1-1:1	XLOC_010433	linc-CLN5-4	NA	NA	NA	inner
CUST_12261_PI429285431	9.595745	P	9.436619	P	1.11661047862516	0	lncRNA	13868-1_{1..1369}	lnc-MIB2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MIB2-1:2	chr1	  1537467	  1538835	+	lnc-MIB2-1	lnc-MIB2-1:2	XLOC_000019	linc-MIB2	LOC643988	NA	chr1:1533388-1535476	inter
CUST_51084_PI429285431	2.9959583	P	3.550538	P	0.68085538279467	0	lncRNA	54721-1_{1..1527}	hg19_lincRNAsTranscripts_TCONS_l2_00007207 range=chr13:52754729-52765098 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007207 range=chr13:52754729-52765098 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 52754729	 52756255	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10"	NA	inter
CUST_15121_PI429285431	1.0837376	A	0.9086161	A	1.12905948723691	0	lncRNA	16781-1_{1..591}	lnc-ZNF608-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF608-4:1	chr5	123735913	123736503	-	lnc-ZNF608-4	lnc-ZNF608-4:1	XLOC_004980	linc-CEP120-4	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20"	NA	inter
CUST_2131_PI429285431	1.3682199	A	2.265379	A	0.536943018621064	0	lncRNA	2122-1_{1..425}	"transcript_id ""ENST00000511840.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511840.1"" | genecode_v17"	chr5	 33011428	 33011852	-	ENSG00000251281.1	ENST00000511840.1	CTD-2066L21.2	CTD-2066L21.2-001	NA	NA	NA	inter
CUST_4927_PI429285431	1.5560248	A	1.4701971	A	1.06129645153166	0	lncRNA	4870-1_{1..522}	"transcript_id ""ENST00000554647.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554647.1"" | genecode_v17"	chr14	 86537098	 86537619	+	ENSG00000258733.1	ENST00000554647.1	CTD-2341M24.1	CTD-2341M24.1-003	NA	NA	NA	inter
CUST_39703_PI429285431	9.7015295	P	8.512491	P	2.28000738923177	0	lncRNA	40640-1_{1..1812}	n405558|NR_002711|lncRNA|Homosapiens||RefGeneNoncode|NR_002711||3.2952600|-0.2080674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405558|NR_002711|lncRNA|Homosapiens||RefGeneNoncode|NR_002711||3.2952600|-0.2080674	chr7	 23624334	 23626145	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14608_PI429285431	7.6449466	P	7.90463	P	0.835271199913875	0	lncRNA	16276-1_{1..243}	lnc-INSIG2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INSIG2-3:1	chr2	118983408	118983650	+	lnc-INSIG2-3	lnc-INSIG2-3:1	XLOC_001638	linc-MARCO	NA	NA	NA	inter
CUST_12862_PI429285431	0.92731035	A	0.9290447	A	0.998798562492033	0	lncRNA	14489-1_{1..556}	lnc-CHD9-5:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD9-5:10	chr16	 52313928	 52314483	+	lnc-CHD9-5	lnc-CHD9-5:10	XLOC_011724	linc-CHD9-4	NA	NA	NA	inter
CUST_13269_PI429285431	0.90770143	A	0.90255195	A	1.00357572525012	0	lncRNA	14901-1_{1..973}	lnc-AMZ2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AMZ2-1:3	chr17	 66182878	 66183850	+	lnc-AMZ2-1	lnc-AMZ2-1:3	XLOC_012288	linc-AMZ2-2	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
CUST_26942_PI429285431	0.9055482	A	0.89965594	A	1.00409255513103	0	lncRNA	28463-1_{1..391}	n324023|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053163|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053163|-1.1445000|-0.2314699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324023|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053163|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053163|-1.1445000|-0.2314699	chr9	 95659185	 95659575	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29327_PI429285431	12.518032	P	12.797165	P	0.824086110127107	0	lncRNA	31078-1_{1..311}	n332542|BC141938|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000435266|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000435266|-0.8947930|-0.1824902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332542|BC141938|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000435266|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000435266|-0.8947930|-0.1824902	chr1	 38274003	 38274313	+	NA	NA	NA	NA	YRDC	NA	chr1:38268614-38273865	inner
CUST_45354_PI429285431	0.9197288	A	0.9161338	A	1.00249497138793	0	lncRNA	49791-1_{1..1860}	"gi|223468682|ref|NR_026802.1| Homo sapiens family with sequence similarity 74, member A4 (FAM74A4), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223468682|ref|NR_026802.1| Homo sapiens family with sequence similarity 74, member A4 (FAM74A4), non-coding RNA"	Chr9	 65487273	 65489132	-	401508	NR_026802.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20"	NA	inter
LNCA_21_P0014814	4.6617966	P	4.957538	P	0.814653574894339	0	lncRNA	XR_132647	XR_132647	XR_132647	NA	NA	LOC100652778	uncharacterized LOC100652778	NA	THC2678276	NA	"PREDICTED: Homo sapiens hypothetical LOC100652778 (LOC100652778), miscRNA [XR_132647]"	chr18:43073306-43073365	hs|18q12.3	Agilent_HUMAN_G3V2	XR_132647	XR_132647	chr18	 43073306	 43073365	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51216_PI429285431	0.9133589	A	1.2602129	A	0.786296860954131	0	lncRNA	54834-1_{1..1083}	hg19_lincRNAsTranscripts_TCONS_l2_00008395 range=chr15:20487974-20496841 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008395 range=chr15:20487974-20496841 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 20487974	 20489056	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7975_PI429285431	0.9112796	A	0.90828925	A	1.00207490230817	0	lncRNA	9587-1_{1..2828}	lnc-REL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-REL-1:1	chr2	 61162609	 61165436	+	lnc-REL-1	lnc-REL-1:1	ENSG00000245247	XLOC_001489	PUS10	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20chr2:61167548-61173467"	NA	inter
CUST_32763_PI429285431	0.9246638	A	0.9179829	A	1.00464158594097	0	lncRNA	34400-1_{1..1385}	n339401|BC040672|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1833|NULL|-1.0435600|-0.3235352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339401|BC040672|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1833|NULL|-1.0435600|-0.3235352	chr3	 74048955	 74050339	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8606_PI429285431	1.5703161	A	0.92877656	A	1.55999298330313	0	lncRNA	10160-2_{3001..4126}	lnc-DHRS12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-DHRS12-1:1	chr13	 52422152	 52423277	-	lnc-DHRS12-1	lnc-DHRS12-1:1	ENSG00000246013	NCRNA00282	NA	"hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.91"	NA	inter
CUST_11284_PI429285431	1.2204326	A	1.4496046	A	0.853124381438129	0	lncRNA	12844-1_{1..366}	lnc-PRL-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRL-4:1	chr6	 21981614	 21981979	-	lnc-PRL-4	lnc-PRL-4:1	XLOC_005639	linc-MBOAT1-2	NA	NA	NA	inter
CUST_33602_PI429285431	0.9173917	A	1.334899	A	0.74871714683937	0	lncRNA	35167-1_{1..308}	n340358|AF009293|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2819|NULL|2.8970600|-0.1424210	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340358|AF009293|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2819|NULL|2.8970600|-0.1424210	chr5	  9362080	  9362387	-	NA	NA	NA	NA	SEMA5A	NA	chr5:9352080-9372388	inner
CUST_46935_PI429285431	3.6516764	P	3.0814776	A	1.48472814859741	0	lncRNA	51044-1_{1..2081}	"gi|290542337|ref|NR_033357.1| Homo sapiens progressive rod-cone degeneration (PRCD), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|290542337|ref|NR_033357.1| Homo sapiens progressive rod-cone degeneration (PRCD), transcript variant 2, non-coding RNA"	Chr17	 74523668	 74525748	+	768206	NR_033357.1	NA	NA	NA	NA	NA	inter
CUST_2776_PI429285431	0.914687	A	0.91015416	A	1.00314686628654	0	lncRNA	2759-1_{1..670}	"transcript_id ""ENST00000590912.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590912.1"" | genecode_v17"	chr7	 20135760	 20136429	+	ENSG00000267055.1	ENST00000590912.1	RP11-486P11.1	RP11-486P11.1-001	MACC1	NA	chr7:20174278-20180098	inter
LNCA_21_P0012128	0.91255	A	0.915617	A	0.997876375684791	0	lncRNA	TCONS_l2_00016336	NA	NA	NA	NA	XLOC_l2_008667	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008667), lincRNA [TCONS_l2_00016336]"	chr20:51155568-51166596	hs|20q13.2	Agilent_HUMAN_G3V2	TCONS_l2_00016336	TCONS_l2_00016336	chr20	 51155568	 51166596	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008337	0.9142321	A	0.9166711	A	0.998310842262116	0	lncRNA	TCONS_00022511	NA	NA	NA	NA	XLOC_010834	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010834), lincRNA [TCONS_00022511]"	chr14:54582159-54582218	hs|14q22.2	Agilent_HUMAN_G3V2	TCONS_00022511	TCONS_00022511	chr14	 54582159	 54582218	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19308_PI429285431	0.90382683	A	0.89879405	A	1.00349454901597	0	lncRNA	20974-1_{1..862}	lnc-CHRNA9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHRNA9-2:1	chr4	 40428805	 40429666	+	lnc-CHRNA9-2	lnc-CHRNA9-2:1	ENSG00000250893.1	RP11-588L15.2	RBM47	NA	chr4:40425272-40439602	inner
CUST_10354_PI429285431	1.2695843	A	0.90849835	A	1.28439232566754	0	lncRNA	11881-2_{3001..6000}	lnc-VTI1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-VTI1A-1:1	chr10	114593541	114596540	+	lnc-VTI1A-1	lnc-VTI1A-1:1	XLOC_008617	linc-TCF7L2-3	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30"	NA	inter
CUST_43683_PI429285431	0.9511979	A	0.92613804	A	1.01752191003248	0	lncRNA	48435-1_{1..2468}	"gi|338827639|ref|NR_040063.1| Homo sapiens SMG7 antisense RNA 1 (SMG7-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338827639|ref|NR_040063.1| Homo sapiens SMG7 antisense RNA 1 (SMG7-AS1), non-coding RNA"	Chr1	183430009	183432476	-	284649	NR_040063.1	NA	NA	NA	"hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10"	NA	inter
CUST_40461_PI429285431	0.92901444	A	0.93282664	A	0.997361072425567	0	lncRNA	41232-2_{3001..5697}	n409378|NR_033760|lncRNA|Homosapiens||RefGeneNoncode|NR_033760||1.8295700|-0.2944327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409378|NR_033760|lncRNA|Homosapiens||RefGeneNoncode|NR_033760||1.8295700|-0.2944327	chr6	 52607260	 52609956	-	NA	NA	NA	NA	GSTA2	NA	chr6:52614885-52619957	inter
CUST_11779_PI429285431	4.9249644	P	4.472315	P	1.36855119092274	0	lncRNA	13358-1_{1..1838}	lnc-MYEOV-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYEOV-1:1	chr11	 69186171	 69188008	+	lnc-MYEOV-1	lnc-MYEOV-1:1	XLOC_009191	linc-CCND1-4	NA	NA	NA	inter
CUST_11901_PI429285431	0.90655386	A	1.0456102	A	0.908112953481757	0	lncRNA	13483-1_{1..751}	lnc-COBLL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COBLL1-1:1	chr2	165522357	165523107	-	lnc-COBLL1-1	lnc-COBLL1-1:1	XLOC_002377	linc-GRB14	NA	NA	NA	inter
CUST_42705_PI429285431	6.3667974	P	6.521776	P	0.898145695294274	0	lncRNA	45634-1_{1..132}	ENST00000384220 ncrna:snoRNA chromosome:GRCh37:7:39368602:39368733:-1 gene:ENSG00000206947 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384220 ncrna:snoRNA chromosome:GRCh37:7:39368602:39368733:-1 gene:ENSG00000206947 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 39368602	 39368733	-	ENSG00000206947	ENST00000384220	NA	NA	POU6F2	NA	chr7:39358602-39378733	inner
CUST_20668_PI429285431	2.8771725	A	3.065044	A	0.877899988163631	0	lncRNA	22307-1_{1..3000}	lnc-STX8-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STX8-3:1	chr17	  9082246	  9085245	-	lnc-STX8-3	lnc-STX8-3:1	ENSG00000262966.1	RP11-85B7.2	NTN1	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70chr17:9072246-9092435"	NA	inner
CUST_17715_PI429285431	0.9059301	A	1.1026204	A	0.872549993952153	0	lncRNA	19445-1_{1..2620}	lnc-MANEA-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MANEA-3:3	chr6	 94485886	 94488505	+	lnc-MANEA-3	lnc-MANEA-3:3	XLOC_005392	linc-MANEA-3	NA	NA	NA	inter
CUST_10283_PI429285431	2.2704542	A	2.956656	P	0.621487896446509	0	lncRNA	11809-1_{1..643}	lnc-RNF113B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF113B-1:1	chr13	 98716286	 98716928	-	lnc-RNF113B-1	lnc-RNF113B-1:1	XLOC_010704	linc-OXGR1-1	NA	NA	NA	inter
CUST_27597_PI429285431	2.9506583	A	3.0547743	A	0.930374847838003	0	lncRNA	29176-1_{1..811}	n324800|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194413|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194413|-1.2227200|-0.2670281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324800|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194413|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194413|-1.2227200|-0.2670281	chr21	 36299505	 36300315	+	NA	NA	NA	NA	RUNX1	NA	chr21:36289505-36311769	inner
CUST_30995_PI429285431	6.324044	P	6.5449147	P	0.85804742856574	0	lncRNA	32783-1_{1..640}	n337158|AF399579|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383992|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383992|5.3994000|-0.1950233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337158|AF399579|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383992|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383992|5.3994000|-0.1950233	chr11	 48238557	 48239196	+	NA	NA	NA	NA	OR4B1	NA	chr11:48238362-48239291	inner
CUST_40253_PI429285431	11.883615	P	11.544645	P	1.26485324019675	0	lncRNA	41067-1_{1..3000}	n408179|NR_028322_2|lncRNA|Homosapiens||RefGeneNoncode|NR_028322_2||4.3633100|-0.0932403	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408179|NR_028322_2|lncRNA|Homosapiens||RefGeneNoncode|NR_028322_2||4.3633100|-0.0932403	chr1	   323891	   326890	+	NA	NA	NA	NA	LOC100288646	NA	chr1:327463-338581	inter
CUST_13092_PI429285431	0.9216358	A	0.9132525	A	1.00582777655942	0	lncRNA	14716-1_{1..800}	lnc-HMGA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HMGA1-1:1	chr6	 34203881	 34204680	+	lnc-HMGA1-1	lnc-HMGA1-1:1	XLOC_005264	linc-HMGA1-1	HMGA1	NA	chr6:34193881-34214008	inter
CUST_33327_PI429285431	3.3432446	P	3.1389494	A	1.15212336231336	0	lncRNA	34909-1_{1..552}	n340043|AF086121|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2498|NULL|-0.8725200|-0.2202274	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340043|AF086121|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2498|NULL|-0.8725200|-0.2202274	chr10	 63842994	 63843545	-	NA	NA	NA	NA	ARID5B	NA	chr10:63832994-63853539	inner
CUST_40647_PI429285431	7.464445	P	5.431815	P	4.09150041993629	0	lncRNA	41386-1_{1..1257}	n410189|NR_036692|lncRNA|Homosapiens||RefGeneNoncode|NR_036692||8.6233200|-0.1497104	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,UCSC,"	>n410189|NR_036692|lncRNA|Homosapiens||RefGeneNoncode|NR_036692||8.6233200|-0.1497104	chr4	190394298	190395554	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9727_PI429285431	4.973064	P	5.3669963	P	0.761052402775606	0	lncRNA	11243-1_{1..392}	lnc-CTSO-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTSO-1:2	chr4	157064904	157065295	-	lnc-CTSO-1	lnc-CTSO-1:2	XLOC_004134	linc-CTSO-1	NA	NA	NA	inter
CUST_48211_PI429285431	0.9227902	A	0.9234334	A	0.999554267101901	0	lncRNA	52074-1_{1..225}	hg19_lincRNAsTranscripts_TCONS_l2_00001233 range=chr1:52035312-52039739 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001233 range=chr1:52035312-52039739 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 52035312	 52035536	-	NA	NA	NA	NA	OSBPL9	NA	chr1:52025312-52049739	inter
CUST_11146_PI429285431	1.1131588	A	1.058987	A	1.0382629023165	0	lncRNA	12704-1_{1..512}	lnc-SEL1L-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEL1L-1:4	chr14	 82073968	 82074479	-	lnc-SEL1L-1	lnc-SEL1L-1:4	XLOC_011088	linc-SEL1L-1	NA	NA	NA	inter
CUST_10228_PI429285431	5.1599255	P	5.4213977	P	0.834236187542084	0	lncRNA	11752-1_{1..445}	lnc-MAP3K2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP3K2-2:1	chr2	128227827	128228271	-	lnc-MAP3K2-2	lnc-MAP3K2-2:1	XLOC_002310	linc-MAP3K2-1	NA	NA	NA	inter
CUST_22011_PI429285431	1.2047334	A	0.9199462	A	1.21823055931928	0	lncRNA	23620-1_{1..565}	lnc-TMEM178-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM178-2:2	chr2	 40332301	 40332865	+	lnc-TMEM178-2	lnc-TMEM178-2:2	ENSG00000227028.1	AC007254.3	SLC8A1	NA	chr2:40339286-40342562	inter
CUST_330_PI429285431	4.980219	P	4.9604373	P	1.01380606510257	0	lncRNA	323-1_{1..2639}	"transcript_id ""ENST00000424528.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000424528.2"" | genecode_v17"	chr1	 98453556	 98456194	-	ENSG00000225206.3	ENST00000424528.2	MIR137HG	MIR137HG-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80"	NA	inter
CUST_35342_PI429285431	0.9194608	A	0.9106055	A	1.00615690251228	0	lncRNA	36751-1_{1..2258}	n342383|AL050175|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4875|NULL|-1.1627300|-0.4397819	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342383|AL050175|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4875|NULL|-1.1627300|-0.4397819	chr13	 35499970	 35502227	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20500_PI429285431	2.1391704	A	2.8989189	A	0.590599278855791	0	lncRNA	22142-1_{1..447}	lnc-CLEC4E-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLEC4E-2:6	chr12	  8542883	  8543329	-	lnc-CLEC4E-2	lnc-CLEC4E-2:6	ENSG00000226091.2	RP11-90D4.2	CLEC6A	NA	chr12:8532883-8552933	inter
CUST_10561_PI429285431	1.9619479	A	3.358034	P	0.379958537508743	0	lncRNA	12092-1_{1..325}	lnc-TMEM242-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM242-1:1	chr6	157542401	157542725	-	lnc-TMEM242-1	lnc-TMEM242-1:1	XLOC_005893	linc-NOX3-4	NA	NA	NA	inter
CUST_32647_PI429285431	0.90619045	A	0.8969311	A	1.00643873243404	0	lncRNA	34301-2_{3001..3779}	n339270|AK125886|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1702|NULL|-1.2554000|-0.3098642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339270|AK125886|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1702|NULL|-1.2554000|-0.3098642	chr16	 70838989	 70839767	-	NA	NA	NA	NA	VAC14	NA	chr16:70825989-70835061	inter
CUST_47889_PI429285431	7.2610445	P	7.3455515	P	0.943106760773067	0	lncRNA	51784-1_{1..1264}	"gi|410171753|ref|XR_171360.1| PREDICTED: Homo sapiens uncharacterized LOC101060680, transcript variant 2 (LOC101060680), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410171753|ref|XR_171360.1| PREDICTED: Homo sapiens uncharacterized LOC101060680, transcript variant 2 (LOC101060680), misc_RNA"	NA	NA	NA	NA	NA	XR_171360.1	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	Unknown
CUST_47932_PI429285431	4.271251	P	4.208196	P	1.04467558837172	0	lncRNA	51823-1_{1..2140}	"gi|410172288|ref|XR_171697.1| PREDICTED: Homo sapiens uncharacterized LOC644090 (LOC644090), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410172288|ref|XR_171697.1| PREDICTED: Homo sapiens uncharacterized LOC644090 (LOC644090), misc_RNA"	NA	NA	NA	NA	NA	XR_171697.1	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.51;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70"	NA	Unknown
CUST_26438_PI429285431	0.91033345	A	0.91134167	A	0.999301399284804	0	lncRNA	27945-1_{1..407}	lnc-H3F3C-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-H3F3C-4:1	chr12	 32260328	 32260734	-	lnc-H3F3C-4	lnc-H3F3C-4:1	ENSG00000257530.1	RP11-843B15.2	BICD1	"hg19_refFlat_BICD1:range=chr12:32260266-325206515'pad=0,hg19_refFlat_BICD1:range=chr12:32260266-325206515'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60;hg19_refFlat_BICD1:range=chr12:32260266-325305615'pad=0,hg19_refFlat_BICD1:range=chr12:32260266-325305615'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60chr12:32260185-32270462"	NA	inner
CUST_38135_PI429285431	6.278489	P	6.0593405	P	1.16404634626905	0	lncRNA	39206-1_{1..1149}	n381279|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gfa.1||-1.1320300|-0.2938299	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381279|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gfa.1||-1.1320300|-0.2938299	chr1	168048780	168049928	-	NA	NA	NA	NA	DCAF6	NA	chr1:168038780-168045081	inner
CUST_1251_PI429285431	6.163606	P	6.4643626	P	0.811826534321653	0	lncRNA	1243-1_{1..361}	"transcript_id ""ENST00000442416.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442416.1"" | genecode_v17"	chr2	220594832	220595192	+	ENSG00000235667.1	ENST00000442416.1	AC009502.3	AC009502.3-001	NA	NA	NA	inter
CUST_2821_PI429285431	5.097524	P	5.540011	P	0.735864988598581	0	lncRNA	2804-1_{1..532}	"transcript_id ""ENST00000436056.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436056.1"" | genecode_v17"	chr7	 46030504	 46031035	+	ENSG00000229628.1	ENST00000436056.1	AC073115.7	AC073115.7-001	NA	"hg19_refFlat_TTC4:range=chr1:55181582-552071865'pad=0,hg19_refFlat_TTC4:range=chr1:55181582-552071865'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30"	NA	inter
CUST_27700_PI429285431	0.920919	A	0.9214853	A	0.999607547781175	0	lncRNA	29279-1_{1..816}	n324909|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000157907|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000157907|1.5142400|-0.4839064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324909|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000157907|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000157907|1.5142400|-0.4839064	chr21	 15041936	 15042751	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7829_PI429285431	0.90426433	A	0.8933519	A	1.00759259879332	0	lncRNA	9453-1_{1..2163}	lnc-ZKSCAN4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-ZKSCAN4-1:1	chr6	 28104523	 28106685	-	lnc-ZKSCAN4-1	lnc-ZKSCAN4-1:1	ENSG00000224024	ENST00000440300	ZNF192	"hg19_refFlat_ZNF498:range=chr7:99217230-992276435'pad=0,hg19_refFlat_ZNF498:range=chr7:99217230-992276435'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZSCAN16:range=chr6:28093222-280977285'pad=0,hg19_refFlat_ZSCAN16:range=chr6:28093222-280977285'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70chr6:28109716-28115071"	NA	inter
CUST_2710_PI429285431	0.91011417	A	1.1979917	A	0.819106228619413	0	lncRNA	2695-1_{1..579}	"transcript_id ""ENST00000454185.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454185.1"" | genecode_v17"	chr6	167650996	167651574	-	ENSG00000231720.1	ENST00000454185.1	RP11-568A7.3	RP11-568A7.3-001	UNC93A	NA	chr6:167640996-167663968	inter
CUST_2238_PI429285431	5.780115	P	6.324795	P	0.685543444029004	0	lncRNA	2230-1_{1..581}	"transcript_id ""ENST00000506014.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506014.1"" | genecode_v17"	chr5	 87836545	 87837125	-	ENSG00000245526.3	ENST00000506014.1	LINC00461	LINC00461-009	NA	NA	NA	inter
CUST_22531_PI429285431	4.1236086	P	4.174482	P	0.965351733118364	0	lncRNA	24119-1_{1..504}	lnc-DHRS7B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHRS7B-3:1	chr17	 20903424	 20903927	+	lnc-DHRS7B-3	lnc-DHRS7B-3:1	ENSG00000263986.1	RP11-746M1.1	USP22	NA	chr17:20902906-20913636	inner
CUST_32994_PI429285431	0.8979167	A	0.89275086	A	1.00358710575084	0	lncRNA	34609-1_{1..2429}	n339675|BC043538|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2119|NULL|1.9846800|-0.3732321	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339675|BC043538|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2119|NULL|1.9846800|-0.3732321	chr3	167613736	167616164	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15755_PI429285431	7.1712036	P	7.1949883	P	0.983648857505351	0	lncRNA	17443-1_{1..564}	lnc-RP11-17M16.1.1-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-17M16.1.1-7:2	chr18	 73933519	 73934082	+	lnc-RP11-17M16.1.1-7	lnc-RP11-17M16.1.1-7:2	XLOC_012724	linc-ZNF236-6	NA	NA	NA	inter
CUST_45895_PI429285431	0.9253724	A	0.9139476	A	1.00795050666047	0	lncRNA	50208-4_{9001..12000}	"gi|403048746|ref|NR_073141.1| Homo sapiens progesterone receptor (PGR), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|403048746|ref|NR_073141.1| Homo sapiens progesterone receptor (PGR), transcript variant 4, non-coding RNA"	Chr11	100909355	100912354	-	5241	NR_073141.2	NA	NA	NA	NA	NA	inter
CUST_36549_PI429285431	1.3884982	A	2.4062767	A	0.493876250760296	0	lncRNA	37745-1_{1..408}	n345047|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_596|NULL|-1.5386200|-0.2426348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345047|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_596|NULL|-1.5386200|-0.2426348	chr9	 32530972	 32531379	+	NA	NA	NA	NA	DDX58	NA	chr9:32520972-32526322	inter
CUST_3642_PI429285431	0.90886045	A	1.5486165	A	0.641821467287158	0	lncRNA	3611-1_{1..541}	"transcript_id ""ENST00000440932.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440932.1"" | genecode_v17"	chr10	 30842783	 30843323	-	ENSG00000228800.1	ENST00000440932.1	RP11-253D19.1	RP11-253D19.1-001	NA	NA	NA	inter
LNCA_21_P0005495	2.9481728	A	3.0551498	P	0.928531655198006	0	lncRNA	TCONS_00013798	NA	NA	NA	NA	XLOC_006436	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006436), lincRNA [TCONS_00013798]"	chr7:48122507-48120563	hs|7p12.3	Agilent_HUMAN_G3V2	TCONS_00013798	TCONS_00013798	chr7	 48120563	 48122507	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51659_PI429285431	10.3448305	P	9.682482	P	1.5826568656282	0	lncRNA	55228-1_{1..476}	hg19_lincRNAsTranscripts_TCONS_l2_00011410 range=chr17:62964155-62968566 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011410 range=chr17:62964155-62968566 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 62964155	 62964630	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8994_PI429285431	0.91207314	A	0.9077767	A	1.00298250411412	0	lncRNA	10525-1_{1..1616}	lnc-MKLN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MKLN1-1:1	chr7	130612321	130613936	+	lnc-MKLN1-1	lnc-MKLN1-1:1	ENSG00000233559	AC016831.7	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_41405_PI429285431	3.4597154	P	3.755319	P	0.814731390801977	0	lncRNA	42523-1_{1..78}	ENST00000583734 ncrna:miRNA chromosome:GRCh37:7:93346240:93346317:1 gene:ENSG00000265423 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583734 ncrna:miRNA chromosome:GRCh37:7:93346240:93346317:1 gene:ENSG00000265423 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 93346240	 93346317	+	ENSG00000265423	ENST00000583734	NA	NA	NA	NA	NA	inter
CUST_11801_PI429285431	0.909745	A	0.9095796	A	1.00011465311583	0	lncRNA	13382-1_{1..989}	lnc-SLITRK5-11:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK5-11:2	chr13	 85985736	 85986724	+	lnc-SLITRK5-11	lnc-SLITRK5-11:2	XLOC_010460	linc-SLITRK5-3	NA	NA	NA	inter
CUST_57_PI429285431	1.7236056	A	0.9095624	A	1.7581317664595	0	lncRNA	56-1_{1..3000}	"transcript_id ""ENST00000398878.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000398878.3"" | genecode_v17"	chr16	 29262829	 29265828	+	ENSG00000198106.7	ENST00000398878.3	SNX29P2	SNX29P2-202	LOC728888	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NPIPL3:range=chr16:21413605-214364195'pad=0,hg19_refFlat_NPIPL3:range=chr16:21413605-214364195'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100132247:range=chr16:22525123-225477065'pad=0,hg19_refFlat_LOC100132247:range=chr16:22525123-225477065'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ACSM1:range=chr16:20634808-207025105'pad=0,hg19_refFlat_ACSM1:range=chr16:20634808-207025105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30chr16:29392710-29415759"	NA	inter
LNCA_21_P0012918	7.072755	P	6.1986833	P	1.83282837618843	0	lncRNA	TCONS_l2_00023029	NA	NA	NA	NA	XLOC_l2_012150	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012150), lincRNA [TCONS_l2_00023029]"	chr5:96392247-96392072	hs|5q15	Agilent_HUMAN_G3V2	TCONS_l2_00023029	TCONS_l2_00023029	chr5	 96392072	 96392247	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28113_PI429285431	0.9188002	A	0.91104496	A	1.0053899967865	0	lncRNA	29735-1_{1..1498}	n325385|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323904|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323904|-1.2353600|-0.4546386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325385|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323904|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323904|-1.2353600|-0.4546386	chr2	 20923011	 20924508	+	NA	NA	NA	NA	C2orf43	NA	chr2:20913011-20934902	inner
CUST_38747_PI429285431	1.5323046	A	1.8193274	A	0.819591654908865	0	lncRNA	39738-1_{1..2595}	n384283|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003dro.1||1.4541500|-0.3202974	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384283|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003dro.1||1.4541500|-0.3202974	chr3	 95373266	 95375860	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30"	NA	inter
CUST_5672_PI429285431	0.9073186	A	0.9067981	A	1.00036084819753	0	lncRNA	5597-1_{1..1588}	"transcript_id ""ENST00000304488.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000304488.4"" | genecode_v17"	chr16	 86369374	 86370961	-	ENSG00000168367.5	ENST00000304488.4	RP11-158I3.2	RP11-158I3.2-201	NA	NA	NA	inter
CUST_18014_PI429285431	6.0214734	P	7.9400105	P	0.264522601437647	0	lncRNA	19747-1_{1..279}	lnc-GNAI2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNAI2-1:4	chr3	 50304100	 50304378	+	lnc-GNAI2-1	lnc-GNAI2-1:4	XLOC_002647	linc-SEMA3B	GNAI2	NA	chr3:50294100-50296786	inter
CUST_15345_PI429285431	5.3947425	P	5.086231	P	1.23842929165442	0	lncRNA	17026-1_{1..851}	lnc-ATF3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATF3-1:4	chr1	212734632	212735482	+	lnc-ATF3-1	lnc-ATF3-1:4	XLOC_000555	linc-ATF3-1	ATF3	NA	chr1:212738697-212744705	inter
CUST_3052_PI429285431	0.92391187	A	0.922354	A	1.00108041642796	0	lncRNA	3031-1_{1..2980}	"transcript_id ""ENST00000522158.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522158.1"" | genecode_v17"	chr8	 29605825	 29608804	+	ENSG00000253490.1	ENST00000522158.1	AC145110.1	AC145110.1-003	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50"	NA	inter
CUST_50381_PI429285431	2.958444	P	3.163022	P	0.867792486371324	0	lncRNA	54090-2_{3001..3580}	hg19_lincRNAsTranscripts_TCONS_l2_00030347 range=chrX:123466548-123470714 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030347 range=chrX:123466548-123470714 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	123469548	123470127	+	NA	NA	NA	NA	SH2D1A	NA	chrX:123466768-123480714	inter
CUST_14044_PI429285431	1.1771183	A	1.5330187	A	0.781381822925968	0	lncRNA	15691-1_{1..477}	lnc-ARF5-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARF5-5:3	chr7	125924175	125924651	+	lnc-ARF5-5	lnc-ARF5-5:3	XLOC_006235	linc-ARF5-4	NA	NA	NA	inter
CUST_21787_PI429285431	0.8962896	A	0.8951188	A	1.00081186610402	0	lncRNA	23397-1_{1..390}	lnc-C12orf66-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C12orf66-2:1	chr12	 64514214	 64514603	-	lnc-C12orf66-2	lnc-C12orf66-2:1	ENSG00000255817.1	RP11-196H14.4	SRGAP1	"hg19_refFlat_SRGAP1:range=chr12:64238597-645364525'pad=0,hg19_refFlat_SRGAP1:range=chr12:64238597-645364525'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30chr12:64504214-64524269"	NA	inner
CUST_36136_PI429285431	0.9108507	A	0.892	A	1.01315204679544	0	lncRNA	37421-2_{3001..3926}	n344708|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_257|NULL|-1.4103200|-0.2829408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344708|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_257|NULL|-1.4103200|-0.2829408	chr13	 51747126	 51748051	+	NA	NA	NA	NA	NA	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80"	NA	inter
CUST_20546_PI429285431	0.9170681	A	0.9158312	A	1.00085772138042	0	lncRNA	22187-1_{1..507}	lnc-C2orf42-3:37	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:37	chr2	 70312948	 70313454	-	lnc-C2orf42-3	lnc-C2orf42-3:37	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_18237_PI429285431	0.92081463	A	1.4971626	A	0.670659333639884	0	lncRNA	19971-1_{1..1333}	lnc-IGSF6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGSF6-1:1	chr16	 21609977	 21611309	-	lnc-IGSF6-1	lnc-IGSF6-1:1	ENSG00000245927	AC005632.1	METTL9	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00chr16:21610856-21620706"	NA	inter
CUST_19676_PI429285431	0.9126839	A	0.89923674	A	1.00936443554455	0	lncRNA	21333-1_{1..699}	lnc-TFEC-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TFEC-2:3	chr7	116105243	116105941	-	lnc-TFEC-2	lnc-TFEC-2:3	ENSG00000237813.2	AC002066.1	NA	NA	NA	inter
LNCA_21_P0008666	3.7978382	P	4.1816382	P	0.766416220588179	0	lncRNA	TCONS_00023491	NA	NA	NA	NA	XLOC_011338	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011338), lincRNA [TCONS_00023491]"	chr15:84295116-84295175	hs|15q25.2	Agilent_HUMAN_G3V2	TCONS_00023491	TCONS_00023491	chr15	 84295116	 84295175	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2962_PI429285431	1.4910862	A	2.2053611	A	0.609511395916499	0	lncRNA	2942-2_{3001..4049}	"transcript_id ""ENST00000444158.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444158.1"" | genecode_v17"	chr7	157261925	157262973	+	ENSG00000234210.1	ENST00000444158.1	AC006372.4	AC006372.4-001	NA	NA	NA	inter
LNCA_21_P0003774	0.9197836	A	0.90602314	A	1.00958365596767	0	lncRNA	TCONS_00008582	NA	NA	NA	NA	XLOC_004091	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004091), lincRNA [TCONS_00008582]"	chr4:138628405-138628346	hs|4q28.3	Agilent_HUMAN_G3V2	TCONS_00008582	TCONS_00008582	chr4	138628346	138628405	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11863_PI429285431	0.8940772	A	1.0636765	A	0.889089586241718	0	lncRNA	13442-1_{1..969}	lnc-GALC-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GALC-5:2	chr14	 87906534	 87907502	-	lnc-GALC-5	lnc-GALC-5:2	XLOC_011095	linc-SEL1L-8	NA	NA	NA	inter
CUST_41168_PI429285431	4.2509646	P	4.716598	P	0.724153075725563	0	lncRNA	41992-1_{1..85}	ENST00000362309 ncrna:miRNA chromosome:GRCh37:12:62997466:62997550:1 gene:ENSG00000199179 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362309 ncrna:miRNA chromosome:GRCh37:12:62997466:62997550:1 gene:ENSG00000199179 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 62997466	 62997550	+	ENSG00000199179	ENST00000362309	NA	NA	MON2	NA	chr12:62987466-62991363	inter
CUST_15131_PI429285431	2.1483514	A	1.8828679	A	1.20203882931055	0	lncRNA	16791-1_{1..1262}	lnc-TMEM17-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM17-2:2	chr2	 62889743	 62891004	-	lnc-TMEM17-2	lnc-TMEM17-2:2	XLOC_002117	linc-TMEM17	NA	NA	NA	inter
CUST_11211_PI429285431	0.8958901	A	0.9277012	A	0.978191545064	0	lncRNA	12768-1_{1..485}	lnc-GMPS-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GMPS-1:3	chr3	155580439	155580923	+	lnc-GMPS-1	lnc-GMPS-1:3	XLOC_002888	linc-GMPS-1	GMPS	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50chr3:155588325-155590750"	NA	inter
CUST_24620_PI429285431	0.8944406	A	0.90060335	A	0.995737417915314	0	lncRNA	26169-1_{1..512}	lnc-JAK1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JAK1-3:1	chr1	 65772116	 65772627	-	lnc-JAK1-3	lnc-JAK1-3:1	ENSG00000229294.1	RP5-1044H5.1	DNAJC6	NA	chr1:65762116-65782204	inner
CUST_14073_PI429285431	3.1772432	P	2.9811642	P	1.14558062668481	0	lncRNA	15718-2_{3001..3368}	lnc-NDFIP2-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDFIP2-2:7	chr13	 79999122	 79999489	+	lnc-NDFIP2-2	lnc-NDFIP2-2:7	XLOC_010445	linc-NDFIP2-1	NA	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
CUST_6347_PI429285431	4.4175444	P	4.227584	P	1.14073240389889	0	lncRNA	6271-1_{1..490}	"transcript_id ""ENST00000602793.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602793.1"" | genecode_v17"	chr19	 15346330	 15346819	-	ENSG00000270143.1	ENST00000602793.1	AC004257.3	AC004257.3-001	BRD4	NA	chr19:15348301-15356819	inter
CUST_3037_PI429285431	0.89568096	A	0.8916249	A	1.00281540237537	0	lncRNA	3016-1_{1..1644}	"transcript_id ""ENST00000522604.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000522604.1"" | genecode_v17"	chr8	 20831497	 20833140	+	ENSG00000253199.1	ENST00000522604.1	RP11-421P23.1	RP11-421P23.1-001	NA	NA	NA	inter
CUST_18799_PI429285431	4.848059	P	5.335308	P	0.713384116665891	0	lncRNA	20494-1_{1..791}	lnc-ULK4-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ULK4-7:1	chr3	 40494613	 40495403	-	lnc-ULK4-7	lnc-ULK4-7:1	ENSG00000223797	ENTPD3-AS1	RPL14	NA	chr3:40498801-40503859	inter
CUST_3123_PI429285431	0.91660446	A	1.1089194	A	0.875200252822443	0	lncRNA	3102-1_{1..2461}	"transcript_id ""ENST00000518934.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000518934.1"" | genecode_v17"	chr8	 58658708	 58661168	+	ENSG00000254139.1	ENST00000518934.1	CTD-2339F6.1	CTD-2339F6.1-001	NA	NA	NA	inter
CUST_40109_PI429285431	1.6784487	A	1.8875346	A	0.865085180718215	0	lncRNA	40954-1_{1..1444}	n407550|NR_027005|lncRNA|Homosapiens||RefGeneNoncode|NR_027005||1.2525400|-0.2888750	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407550|NR_027005|lncRNA|Homosapiens||RefGeneNoncode|NR_027005||1.2525400|-0.2888750	chr6	 73983861	 73985304	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_EIF3E:range=chr8:109214114-1092609315'pad=0,hg19_refFlat_EIF3E:range=chr8:109214114-1092609315'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50"	NA	inter
CUST_11144_PI429285431	1.2525656	A	1.6683333	A	0.749620493620796	0	lncRNA	12702-1_{1..336}	lnc-LBH-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LBH-2:1	chr2	 30582334	 30582669	+	lnc-LBH-2	lnc-LBH-2:1	XLOC_001412	linc-LCLAT1-1	NA	NA	NA	inter
CUST_42032_PI429285431	14.196938	P	14.399912	P	0.868757841612804	0	lncRNA	43906-1_{1..89}	ENST00000582477 ncrna:miRNA chromosome:GRCh37:19:58898137:58898225:-1 gene:ENSG00000266640 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582477 ncrna:miRNA chromosome:GRCh37:19:58898137:58898225:-1 gene:ENSG00000266640 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 58898137	 58898225	-	ENSG00000266640	ENST00000582477	NA	NA	ZNF837	NA	chr19:58888137-58892389	inter
CUST_35980_PI429285431	1.1575409	A	0.9035897	A	1.1924685357057	0	lncRNA	37324-3_{6001..9000}	n344599|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_147|NULL|-1.5340900|-0.2563807	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344599|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_147|NULL|-1.5340900|-0.2563807	chr2	 65046867	 65049866	-	NA	NA	NA	NA	SLC1A4	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr2:65187142-65193459"	NA	inter
CUST_26115_PI429285431	0.9265901	A	1.2586107	A	0.794423056581821	0	lncRNA	27626-1_{1..602}	lnc-C2orf42-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:3	chr2	 70314920	 70315521	-	lnc-C2orf42-3	lnc-C2orf42-3:3	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inner
CUST_40001_PI429285431	4.820221	P	4.392399	P	1.34520122708869	0	lncRNA	40865-1_{1..2392}	n407138|NR_026550|lncRNA|Homosapiens||RefGeneNoncode|NR_026550||1.2633800|-0.3165515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407138|NR_026550|lncRNA|Homosapiens||RefGeneNoncode|NR_026550||1.2633800|-0.3165515	chr1	167885912	167888303	-	NA	NA	NA	NA	DCAF6	NA	chr1:167905797-167915439	inner
CUST_36911_PI429285431	0.90870684	A	0.9094523	A	0.999483419976209	0	lncRNA	38071-1_{1..2177}	n345384|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_933|NULL|-1.6486100|-0.2021195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345384|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_933|NULL|-1.6486100|-0.2021195	chr20	 19737100	 19739276	+	NA	NA	NA	NA	NA	"hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80"	NA	inter
CUST_39916_PI429285431	5.3946986	P	5.5481243	P	0.899112969261265	0	lncRNA	40796-1_{1..3000}	n406668|NR_024207|lncRNA|Homosapiens||RefGeneNoncode|NR_024207||13.0783000|-0.0860457	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406668|NR_024207|lncRNA|Homosapiens||RefGeneNoncode|NR_024207||13.0783000|-0.0860457	chr8	145162628	145165627	+	NA	NA	NA	NA	MAF1	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80chr8:145159305-145162515"	NA	inter
CUST_40714_PI429285431	0.92090183	A	0.9118378	A	1.00630248443888	0	lncRNA	41452-2_{3001..3690}	n410283|NR_037177_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_4||-1.0612800|-0.2921671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410283|NR_037177_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_4||-1.0612800|-0.2921671	chr6	  4151913	  4152602	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10875_PI429285431	0.91236305	A	1.0776712	A	0.891738029805352	0	lncRNA	12415-1_{1..856}	lnc-TWIST1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TWIST1-1:3	chr7	 19040803	 19041658	-	lnc-TWIST1-1	lnc-TWIST1-1:3	XLOC_006364	linc-PRPS1L1	HDAC9	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60chr7:19030803-19036993"	NA	inter
CUST_24521_PI429285431	1.1729362	A	1.1370659	A	1.02517506928763	0	lncRNA	26072-1_{1..560}	lnc-GLDN-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLDN-3:1	chr15	 51790965	 51791524	+	lnc-GLDN-3	lnc-GLDN-3:1	ENSG00000259678.1	RP11-707P17.1	DMXL2	"hg19_refFlat_DMXL2:range=chr15:51741181-519147425'pad=0,hg19_refFlat_DMXL2:range=chr15:51741181-519147425'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60chr15:51780965-51801030"	NA	inner
CUST_44046_PI429285431	4.6497645	P	2.8475823	A	3.48747336828864	0	lncRNA	48723-2_{3001..3657}	"gi|299890813|ref|NR_033915.1| Homo sapiens origin recognition complex, subunit 2 (ORC2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299890813|ref|NR_033915.1| Homo sapiens origin recognition complex, subunit 2 (ORC2), transcript variant 2, non-coding RNA"	Chr2	201777894	201778550	-	4999	NR_033915.1	NA	NA	NA	NA	NA	inter
CUST_35064_PI429285431	3.8185592	P	3.4017856	P	1.33493879688565	0	lncRNA	36474-1_{1..2096}	n342014|AK126405|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4495|NULL|-0.8363650|-0.1737908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342014|AK126405|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4495|NULL|-0.8363650|-0.1737908	chr12	108681824	108683919	-	NA	NA	NA	NA	CMKLR1	NA	chr12:108674883-108693920	inner
CUST_21935_PI429285431	4.604093	P	5.0219855	P	0.748517265826409	0	lncRNA	23543-1_{1..640}	lnc-STOML1-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STOML1-1:12	chr15	 74218581	 74219220	-	lnc-STOML1-1	lnc-STOML1-1:12	ENSG00000261801.1	RP11-941F15.1	LOXL1	NA	chr15:74218789-74228639	inter
CUST_37905_PI429285431	1.2694995	A	2.2047534	A	0.522950427715315	0	lncRNA	38994-1_{1..398}	n346444|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1994|NULL|-1.3234900|-0.1310763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346444|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1994|NULL|-1.3234900|-0.1310763	chr1	 23953890	 23954287	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32940_PI429285431	0.91021025	A	0.90475094	A	1.0037912741005	0	lncRNA	34561-1_{1..486}	n339612|AK130979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2056|NULL|-1.2252500|-0.1649023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339612|AK130979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2056|NULL|-1.2252500|-0.1649023	chr20	 25513662	 25514147	+	NA	NA	NA	NA	NINL	NA	chr20:25503662-25524148	inner
CUST_41575_PI429285431	0.91369313	A	0.9110557	A	1.00182979921164	0	lncRNA	42895-1_{1..105}	ENST00000408273 ncrna:miRNA chromosome:GRCh37:17:2651372:2651476:-1 gene:ENSG00000221200 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408273 ncrna:miRNA chromosome:GRCh37:17:2651372:2651476:-1 gene:ENSG00000221200 gene_biotype:miRNA transcript_biotype:miRNA	chr17	  2651372	  2651476	-	ENSG00000221200	ENST00000408273	NA	NA	NA	NA	NA	inter
CUST_43351_PI429285431	3.106935	P	1.474079	A	3.10126326294736	0	lncRNA	48170-3_{6001..6727}	"gi|383276540|ref|NR_047520.1| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|383276540|ref|NR_047520.1| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 2, non-coding RNA"	Chr1	   768971	   769697	+	643837	NR_047520.1	NA	NA	NA	NA	NA	inter
CUST_25869_PI429285431	0.98184	A	0.98344845	A	0.998885728679262	0	lncRNA	27390-1_{1..445}	lnc-AC107021.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC107021.1-1:1	chr3	145782674	145783118	+	lnc-AC107021.1-1	lnc-AC107021.1-1:1	ENSG00000243415.2	RP11-274H2.2	PLOD2	NA	chr3:145787227-145792909	inter
CUST_7429_PI429285431	0.92844045	A	1.1251924	A	0.87251270848553	0	lncRNA	9071-1_{1..2262}	lnc-KIAA1147-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-KIAA1147-2:6	chr7	141437998	141440259	-	lnc-KIAA1147-2	lnc-KIAA1147-2:6	ENSG00000228775	RP5-894A10.5	WEE2	"hg19_refFlat_WEE2:range=chr7:141408559-1414301205'pad=0,hg19_refFlat_WEE2:range=chr7:141408559-1414301205'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80chr7:141427998-141431071"	NA	inter
CUST_15795_PI429285431	1.1434747	A	1.1221459	A	1.01489382142137	0	lncRNA	17486-1_{1..596}	lnc-SLC15A4-14:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC15A4-14:2	chr12	127630487	127631082	-	lnc-SLC15A4-14	lnc-SLC15A4-14:2	XLOC_010248	linc-DHX37-2	NA	NA	NA	inter
CUST_42287_PI429285431	7.475811	P	7.943523	P	0.723110484799811	0	lncRNA	44901-1_{1..92}	ENST00000384468 ncrna:snoRNA chromosome:GRCh37:15:25322198:25322289:1 gene:ENSG00000207197 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384468 ncrna:snoRNA chromosome:GRCh37:15:25322198:25322289:1 gene:ENSG00000207197 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 25322198	 25322289	+	ENSG00000207197	ENST00000384468	NA	NA	SNRPN	NA	chr15:25312198-25332289	inter
CUST_43954_PI429285431	5.53828	P	3.6593883	P	3.67792408042836	0	lncRNA	48663-1_{1..3000}	"gi|254750700|ref|NR_027671.2| Homo sapiens UDP-glucose glycoprotein glucosyltransferase 1 (UGGT1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254750700|ref|NR_027671.2| Homo sapiens UDP-glucose glycoprotein glucosyltransferase 1 (UGGT1), transcript variant 2, non-coding RNA"	Chr2	128848782	128851781	+	56886	NR_027671.2	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30"	NA	inter
CUST_30697_PI429285431	0.982926	A	1.0377158	A	0.962734702884415	0	lncRNA	32479-1_{1..340}	n336194|X93699|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324649|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324649|2.0914200|-0.0872976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336194|X93699|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324649|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324649|2.0914200|-0.0872976	chr2	 89160374	 89160713	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3034_PI429285431	0.9248879	A	0.917957	A	1.00481569214638	0	lncRNA	3013-1_{1..676}	"transcript_id ""ENST00000523035.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523035.1"" | genecode_v17"	chr8	 20811153	 20811828	+	ENSG00000253147.1	ENST00000523035.1	RP11-369E15.4	RP11-369E15.4-002	NA	NA	NA	inter
CUST_48456_PI429285431	6.856951	P	5.1434283	P	3.27960644307759	0	lncRNA	52310-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00001786 range=chr1:219781270-219785789 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001786 range=chr1:219781270-219785789 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	219781270	219784269	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13803_PI429285431	5.014773	P	5.3303156	P	0.803548717897225	0	lncRNA	15445-1_{1..346}	lnc-TCF24-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF24-1:1	chr8	 67894284	 67894629	-	lnc-TCF24-1	lnc-TCF24-1:1	XLOC_007112	linc-TCF24	LRRC67	NA	chr8:67900366-67904344	inter
CUST_21048_PI429285431	5.940608	P	6.2152343	P	0.826664420565635	0	lncRNA	22675-1_{1..719}	lnc-GAS8-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GAS8-1:6	chr16	 90288797	 90289515	+	lnc-GAS8-1	lnc-GAS8-1:6	ENSG00000260923.1	AC137934.1	NA	NA	NA	inter
CUST_25183_PI429285431	0.92532766	A	0.92770445	A	0.998353891038718	0	lncRNA	26714-1_{1..538}	lnc-OR13G1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR13G1-1:1	chr1	247804013	247804550	-	lnc-OR13G1-1	lnc-OR13G1-1:1	ENSG00000236817.1	RP11-978I15.10	NA	NA	NA	inter
CUST_18450_PI429285431	5.8695893	P	6.0998015	P	0.852509490478355	0	lncRNA	20174-1_{1..425}	lnc-GNAI2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GNAI2-1:2	chr3	 50298565	 50298989	+	lnc-GNAI2-1	lnc-GNAI2-1:2	ENSG00000230454	U73166.2	GNAI2	NA	chr3:50288565-50296786	inter
CUST_20011_PI429285431	0.9075469	A	0.9026051	A	1.00343126810573	0	lncRNA	21664-1_{1..491}	lnc-OR6F1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR6F1-1:2	chr1	247886953	247887443	-	lnc-OR6F1-1	lnc-OR6F1-1:2	ENSG00000239395.1	RP11-634B7.5	NA	NA	NA	inter
CUST_13395_PI429285431	0.9283669	A	0.9357774	A	0.994876602421167	0	lncRNA	15032-1_{1..336}	lnc-C11orf82-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C11orf82-4:1	chr11	 80808251	 80808586	+	lnc-C11orf82-4	lnc-C11orf82-4:1	XLOC_009230	linc-C11orf82-3	NA	NA	NA	inter
CUST_10938_PI429285431	2.0921443	A	0.92044055	A	2.25277581357889	0	lncRNA	12479-1_{1..348}	lnc-VSTM2B-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VSTM2B-7:2	chr19	 29386399	 29386746	+	lnc-VSTM2B-7	lnc-VSTM2B-7:2	XLOC_013026	linc-VSTM2B-7	NA	NA	NA	inter
CUST_20491_PI429285431	0.9466919	A	0.9276099	A	1.01331449336122	0	lncRNA	22133-1_{1..713}	lnc-AGGF1-3:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGGF1-3:14	chr5	 76443477	 76444189	+	lnc-AGGF1-3	lnc-AGGF1-3:14	ENSG00000250802.2	CTC-564N23.3	NA	NA	NA	inter
CUST_32353_PI429285431	0.92838037	A	0.9224748	A	1.00410181871979	0	lncRNA	34032-2_{3001..3480}	n338935|BC035177|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1362|NULL|-0.8668450|-0.2019873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338935|BC035177|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1362|NULL|-0.8668450|-0.2019873	chr2	106729630	106730109	+	NA	NA	NA	NA	UXS1	"hg19_refFlat_UXS1:range=chr2:106710482-1068106975'pad=0,hg19_refFlat_UXS1:range=chr2:106710482-1068106975'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30;hg19_refFlat_UXS1:range=chr2:106710482-1067461875'pad=0,hg19_refFlat_UXS1:range=chr2:106710482-1067461875'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30chr2:106716630-106740096"	NA	inter
CUST_21543_PI429285431	1.8728195	A	1.3866528	A	1.40071816120772	0	lncRNA	23160-1_{1..477}	lnc-NRBF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NRBF2-1:1	chr10	 65041568	 65042044	+	lnc-NRBF2-1	lnc-NRBF2-1:1	ENSG00000230677.1	RP11-444I9.3	JMJD1C	NA	chr10:65031568-65051994	inner
CUST_17485_PI429285431	1.0012357	A	0.9282791	A	1.05187013575238	0	lncRNA	19212-1_{1..1125}	lnc-TNFRSF10A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFRSF10A-1:2	chr8	 23087516	 23088640	-	lnc-TNFRSF10A-1	lnc-TNFRSF10A-1:2	XLOC_007026	linc-TNFRSF10A	TNFRSF10A	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30chr8:23077516-23082680"	NA	inter
CUST_40213_PI429285431	0.98201257	A	1.1081167	A	0.916302505941446	0	lncRNA	41039-2_{3001..4622}	n408041|NR_027822_5|lncRNA|Homosapiens||RefGeneNoncode|NR_027822_5||-1.2140400|-0.2826014	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n408041|NR_027822_5|lncRNA|Homosapiens||RefGeneNoncode|NR_027822_5||-1.2140400|-0.2826014	chr6	  1742434	  1744055	+	NA	NA	NA	NA	GMDS	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr6:1729434-1756752"	NA	inner
CUST_14526_PI429285431	0.90187573	A	0.9013469	A	1.00036662421373	0	lncRNA	16194-1_{1..538}	lnc-SERPINI1-9:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERPINI1-9:6	chr3	164405416	164405953	+	lnc-SERPINI1-9	lnc-SERPINI1-9:6	XLOC_002900	linc-SERPINI1-4	NA	NA	NA	inter
CUST_5930_PI429285431	1.4475116	A	1.1107295	A	1.26293649758983	0	lncRNA	5859-1_{1..502}	"transcript_id ""ENST00000577329.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577329.1"" | genecode_v17"	chr17	 62050280	 62050781	-	ENSG00000263489.1	ENST00000577329.1	CTC-264K15.6	CTC-264K15.6-001	C17orf72	NA	chr17:62075711-62076782	inter
CUST_28921_PI429285431	1.5365353	A	1.2934676	A	1.18350655775414	0	lncRNA	30638-1_{1..906}	n326346|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000083238|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000083238|-1.2693000|-0.4285841	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326346|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000083238|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000083238|-1.2693000|-0.4285841	chr1	165412081	165412986	-	NA	NA	NA	NA	RXRG	NA	chr1:165402081-165414592	inter
CUST_19485_PI429285431	0.91635907	A	0.9121308	A	1.00293511246169	0	lncRNA	21141-1_{1..743}	lnc-MACC1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MACC1-1:5	chr7	 20164703	 20165445	-	lnc-MACC1-1	lnc-MACC1-1:5	ENSG00000243004.1	AC005062.2	MACC1	NA	chr7:20174278-20174785	inter
CUST_1009_PI429285431	0.90319115	A	0.90953076	A	0.995615357936762	0	lncRNA	998-1_{1..609}	"transcript_id ""ENST00000414300.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414300.1"" | genecode_v17"	chr2	108002088	108002696	-	ENSG00000237880.1	ENST00000414300.1	AC096669.2	AC096669.2-001	NA	NA	NA	inter
CUST_49643_PI429285431	6.8881617	P	5.9242935	P	1.95053272049089	0	lncRNA	53426-1_{1..952}	hg19_lincRNAsTranscripts_TCONS_l2_00025880 range=chr7:55832306-55846856 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025880 range=chr7:55832306-55846856 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 55832306	 55833257	+	NA	NA	NA	NA	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40"	NA	inter
CUST_43957_PI429285431	7.4876966	P	5.858756	P	3.09285800513482	0	lncRNA	48663-4_{9001..10955}	"gi|254750700|ref|NR_027671.2| Homo sapiens UDP-glucose glycoprotein glucosyltransferase 1 (UGGT1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254750700|ref|NR_027671.2| Homo sapiens UDP-glucose glycoprotein glucosyltransferase 1 (UGGT1), transcript variant 2, non-coding RNA"	Chr2	128857782	128859736	+	56886	NR_027671.2	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30"	NA	inter
LNCA_21_P0005895	0.9247926	A	1.0154271	A	0.939109636187509	0	lncRNA	TCONS_00015150	NA	NA	NA	NA	XLOC_007193	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007193), lincRNA [TCONS_00015150]"	chr8:119740406-119740347	hs|8q24.12	Agilent_HUMAN_G3V2	TCONS_00015150	TCONS_00015150	chr8	119740347	119740406	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17905_PI429285431	1.075161	A	1.4801894	A	0.755221425814386	0	lncRNA	19637-1_{1..3000}	lnc-TECRL-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TECRL-1:3	chr4	 64339712	 64342711	-	lnc-TECRL-1	lnc-TECRL-1:3	XLOC_003970	linc-IGFBP7-11	NA	NA	NA	inter
CUST_42451_PI429285431	4.8125696	P	5.219345	P	0.754307460434563	0	lncRNA	45179-1_{1..72}	ENST00000384769 ncrna:snoRNA chromosome:GRCh37:13:27829201:27829272:1 gene:ENSG00000207500 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384769 ncrna:snoRNA chromosome:GRCh37:13:27829201:27829272:1 gene:ENSG00000207500 gene_biotype:snoRNA transcript_biotype:snoRNA	chr13	 27829201	 27829272	+	ENSG00000207500	ENST00000384769	NA	NA	RPL21	NA	chr13:27825692-27830705	inter
CUST_40222_PI429285431	2.6114247	A	2.1036148	A	1.42189003966127	0	lncRNA	41045-1_{1..3000}	n408055|NR_027867|lncRNA|Homosapiens||RefGeneNoncode|NR_027867||10.4246000|-0.3394865	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408055|NR_027867|lncRNA|Homosapiens||RefGeneNoncode|NR_027867||10.4246000|-0.3394865	chr3	 33870129	 33873128	+	NA	NA	NA	NA	PDCD6IP	NA	chr3:33860129-33911195	inner
CUST_25483_PI429285431	8.868912	P	8.74545	P	1.08934580504769	0	lncRNA	27013-1_{1..885}	lnc-CCDC51-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC51-1:2	chr3	 48487663	 48488547	-	lnc-CCDC51-1	lnc-CCDC51-1:2	ENSG00000244380.1	RP11-24C3.2	ATRIP	"hg19_refFlat_TMA7:range=chr3:48481707-484852905'pad=0,hg19_refFlat_TMA7:range=chr3:48481707-484852905'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20chr3:48488218-48498036"	NA	inter
LNCA_21_P0006336	4.139781	P	4.308839	P	0.889423235749051	0	lncRNA	AY129027	NA	AY129027	NA	Hs.609301	LOC401561	FP7915 protein	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007896), lincRNA [TCONS_00016514]"	chr9:139506605-139506546	hs|9q34.3	Agilent_HUMAN_G3V2	AY129027	AY129027	chr9	139506546	139506605	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16690_PI429285431	7.384658	P	7.3849998	P	0.999763110356468	0	lncRNA	18395-1_{1..614}	lnc-TMEM116-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM116-2:8	chr12	112279509	112280122	-	lnc-TMEM116-2	lnc-TMEM116-2:8	XLOC_010202	linc-BRAP-2	MAPKAPK5	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80chr12:112280279-112289752"	NA	inter
CUST_137_PI429285431	5.444152	P	5.7103286	P	0.831520305917073	0	lncRNA	129-1_{1..1697}	"transcript_id ""ENST00000453118.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000453118.1"" | genecode_v17"	chr1	  2976181	  2977877	-	ENSG00000177133.5	ENST00000453118.1	RP1-163G9.1	RP1-163G9.1-003	PRDM16	NA	chr1:2985742-2988596	inter
CUST_8375_PI429285431	0.9266287	A	0.9177431	A	1.00617803440324	0	lncRNA	9953-1_{1..2642}	lnc-AP3M1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP3M1-1:1	chr10	 75869787	 75872428	-	lnc-AP3M1-1	lnc-AP3M1-1:1	ENSG00000250779	ENST00000506015	VCL	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_VCL:range=chr10:75757966-758779275'pad=0,hg19_refFlat_VCL:range=chr10:75757966-758779275'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-29.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90chr10:75859787-75879918"	NA	inner
CUST_39876_PI429285431	0.9042966	A	0.9120124	A	0.994666091064006	0	lncRNA	40769-1_{1..3000}	n406542|NR_024052_5|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_5||1.5958200|-0.1895631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406542|NR_024052_5|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_5||1.5958200|-0.1895631	chr6	  1603264	  1606263	-	NA	NA	NA	NA	GMDS	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_FOXC1:range=chr6:1610681-16123425'pad=0,hg19_refFlat_FOXC1:range=chr6:1610681-16123425'pad=0 3'pad=0 strand=+ repeatMasking=none,-112.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FOXC2:range=chr16:86600942-866024475'pad=0,hg19_refFlat_FOXC2:range=chr16:86600942-866024475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50chr6:1624041-1652995"	NA	inner
CUST_49020_PI429285431	4.768011	P	4.791583	P	0.983793889913365	0	lncRNA	52848-1_{1..459}	hg19_lincRNAsTranscripts_TCONS_l2_00021022 range=chr4:3923469-3957127 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021022 range=chr4:3923469-3957127 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  3923469	  3923927	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20420_PI429285431	0.92065585	A	0.9282216	A	0.994769548416036	0	lncRNA	22062-1_{1..848}	lnc-HELT-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-HELT-2:1	chr4	185983611	185984458	+	lnc-HELT-2	lnc-HELT-2:1	ENSG00000250754.1	RP11-386B13.3	NA	NA	NA	inter
CUST_21250_PI429285431	4.078032	P	4.47475	P	0.759584304446049	0	lncRNA	22876-1_{1..838}	lnc-C17orf62-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf62-2:1	chr17	 80435505	 80436342	-	lnc-C17orf62-2	lnc-C17orf62-2:1	ENSG00000266445.1	RP13-991F5.2	NARF	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.82;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.79;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80chr17:80425505-80445800"	NA	inner
CUST_18531_PI429285431	6.6244802	P	6.9638624	P	0.790379700801798	0	lncRNA	20245-1_{1..616}	lnc-ZNF8-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF8-4:3	chr19	 58817454	 58818069	+	lnc-ZNF8-4	lnc-ZNF8-4:3	ENSG00000142396	AC020915.4	NA	NA	NA	inter
LNCA_21_P0006969	3.548708	P	4.469109	P	0.528362140544935	0	lncRNA	TCONS_00018437	NA	NA	NA	NA	XLOC_008730	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008730), lincRNA [TCONS_00018437]"	chr10:10836807-10828645	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018437	TCONS_00018437	chr10	 10828645	 10836807	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51782_PI429285431	0.92674285	A	1.3040545	A	0.769870849295573	0	lncRNA	55332-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00012299 range=chr19:10151450-10186935 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012299 range=chr19:10151450-10186935 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 10151450	 10154449	+	NA	NA	NA	NA	C19orf66	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-14.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.76;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90chr19:10196806-10196935"	NA	inter
CUST_18096_PI429285431	3.600769	P	3.7532043	P	0.899730415903904	0	lncRNA	19831-1_{1..550}	lnc-PARN-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PARN-6:1	chr16	 14109719	 14110268	-	lnc-PARN-6	lnc-PARN-6:1	XLOC_011880	linc-CPPED1-3	NA	NA	NA	inter
CUST_44892_PI429285431	7.6314473	P	8.849952	P	0.429727884523219	0	lncRNA	49414-1_{1..1052}	"gi|335353771|ref|NR_038366.1| Homo sapiens HOXA transcript antisense RNA, myeloid-specific 1 (HOTAIRM1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|335353771|ref|NR_038366.1| Homo sapiens HOXA transcript antisense RNA, myeloid-specific 1 (HOTAIRM1), transcript variant 1, non-coding RNA"	Chr7	 27135713	 27136764	+	100506311	NR_038366.1	NA	NA	NA	NA	NA	inter
CUST_26299_PI429285431	0.9207596	A	0.9180047	A	1.0019113755216	0	lncRNA	27806-1_{1..3000}	lnc-RP11-582J16.5.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-582J16.5.1-4:1	chr8	 22402699	 22405698	-	lnc-RP11-582J16.5.1-4	lnc-RP11-582J16.5.1-4:1	ENSG00000251034.1	RP11-582J16.4	SORBS3	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60chr8:22409251-22412918"	NA	inter
CUST_31783_PI429285431	0.99776345	A	0.92194724	A	1.05395714742671	0	lncRNA	33523-1_{1..3000}	n338325|AL833129|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|719|NULL|-1.2066200|-0.3348852	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338325|AL833129|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|719|NULL|-1.2066200|-0.3348852	chr14	 60606870	 60609869	+	NA	NA	NA	NA	C14orf135	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.71;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00chr14:60596870-60601532"	NA	inter
CUST_24056_PI429285431	2.3338232	A	2.7108874	A	0.770002908306516	0	lncRNA	25608-1_{1..3000}	lnc-SEC16B.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC16B.1-2:2	chr1	177991575	177994574	-	lnc-SEC16B.1-2	lnc-SEC16B.1-2:2	ENSG00000254154.3	SEC16B	NA	NA	NA	inter
CUST_32499_PI429285431	5.0611916	P	5.0036983	P	1.040656036697	0	lncRNA	34166-1_{1..2537}	n339103|BC041389|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1533|NULL|-1.0741100|-0.2707686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339103|BC041389|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1533|NULL|-1.0741100|-0.2707686	chr2	204102183	204104719	-	NA	NA	NA	NA	CYP20A1	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CYP20A1:range=chr2:204103786-2041616315'pad=0,hg19_refFlat_CYP20A1:range=chr2:204103786-2041616315'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90chr2:204103164-204114694"	NA	inner
CUST_25610_PI429285431	3.7572381	P	4.4142737	P	0.634180050417798	0	lncRNA	27139-1_{1..558}	lnc-WBSCR22-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-WBSCR22-1:1	chr7	 73150260	 73150817	+	lnc-WBSCR22-1	lnc-WBSCR22-1:1	ENSG00000225969.1	ABHD11-AS1	ABHD11	NA	chr7:73150424-73153190	inter
CUST_42518_PI429285431	0.91107225	A	1.422667	A	0.701446632532928	0	lncRNA	45308-1_{1..68}	ENST00000391045 ncrna:snoRNA chromosome:GRCh37:X:45752347:45752414:-1 gene:ENSG00000212347 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391045 ncrna:snoRNA chromosome:GRCh37:X:45752347:45752414:-1 gene:ENSG00000212347 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	 45752347	 45752414	-	ENSG00000212347	ENST00000391045	NA	NA	NA	NA	NA	inter
CUST_17843_PI429285431	8.094005	P	8.528466	P	0.739970160523927	0	lncRNA	19578-1_{1..262}	lnc-NMNAT2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NMNAT2-3:1	chr1	183119135	183119396	-	lnc-NMNAT2-3	lnc-NMNAT2-3:1	XLOC_001120	linc-C1orf14	LAMC1	NA	chr1:183109135-183114727	inter
CUST_11302_PI429285431	0.9295504	A	1.0455108	A	0.922767821017155	0	lncRNA	12865-1_{1..414}	lnc-SLC25A38-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A38-1:1	chr3	 39422418	 39422831	+	lnc-SLC25A38-1	lnc-SLC25A38-1:1	XLOC_002619	linc-SLC25A38	SLC25A38	NA	chr3:39412418-39432626	inter
CUST_34681_PI429285431	0.9033945	A	0.8942732	A	1.00634243195762	0	lncRNA	36133-1_{1..1748}	n341586|AF035317|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4057|NULL|-0.2721770|-0.3615592	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341586|AF035317|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4057|NULL|-0.2721770|-0.3615592	chr8	110975868	110977615	-	NA	NA	NA	NA	KCNV1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60chr8:110979233-110986959"	NA	inter
CUST_29401_PI429285431	3.4218678	P	1.0191647	A	5.28793007691179	0	lncRNA	31155-1_{1..200}	n332754|AF024703|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062743|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062743|0.1590440|-0.1886245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332754|AF024703|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062743|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062743|0.1590440|-0.1886245	chr19	 44418480	 44418679	-	NA	NA	NA	NA	ZNF45	NA	chr19:44416776-44428680	inner
CUST_5281_PI429285431	1.0401484	A	0.9128635	A	1.09223621667123	0	lncRNA	5221-1_{1..628}	"transcript_id ""ENST00000570008.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000570008.1"" | genecode_v17"	chr15	 86631339	 86631966	-	ENSG00000260477.2	ENST00000570008.1	RP11-553E24.2	RP11-553E24.2-003	NA	NA	NA	inter
CUST_3942_PI429285431	2.8563871	A	2.852935	A	1.00239567844468	0	lncRNA	3912-1_{1..653}	"transcript_id ""ENST00000530049.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530049.1"" | genecode_v17"	chr11	 46259933	 46260585	+	ENSG00000254639.1	ENST00000530049.1	CTD-2589M5.5	CTD-2589M5.5-001	NA	NA	NA	inter
CUST_35239_PI429285431	2.525905	A	3.0594382	P	0.690860723570456	0	lncRNA	36640-1_{1..2415}	n342233|AK091825|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4723|NULL|0.1963600|-0.2012328	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342233|AK091825|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4723|NULL|0.1963600|-0.2012328	chr1	 25629228	 25631642	-	NA	NA	NA	NA	RHD	"hg19_refFlat_RHCE:range=chr1:25689018-257472775'pad=0,hg19_refFlat_RHCE:range=chr1:25689018-257472775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_RHD:range=chr1:25599039-256554155'pad=0,hg19_refFlat_RHD:range=chr1:25599039-256554155'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RHCE:range=chr1:25696986-257472775'pad=0,hg19_refFlat_RHCE:range=chr1:25696986-257472775'pad=0 3'pad=0 strand=- repeatMasking=none,-93.80chr1:25619228-25641643"	NA	inner
CUST_48825_PI429285431	3.0583029	A	3.6310816	P	0.67232061876039	0	lncRNA	52663-1_{1..316}	hg19_lincRNAsTranscripts_TCONS_l2_00014353 range=chr2:243030917-243081018 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014353 range=chr2:243030917-243081018 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	243030917	243031232	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_137_PI429201921	1.8033534	A	2.8552227	A	0.482342787837584	0	lncRNA	124-1_{1..3000}	TC07002996.hg.1	TCONS_l2_00026666-XLOC_l2_013877 // Broad TUCP // linc-GUSB-6 chr7:-:66367519-66371249 // chr7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr7:-:66367519-66371249	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00026666-XLOC_l2_013877	linc-GUSB-6	chr7	 66367519	 66371249	-	NA	NA	NA	NA	SKI	NA	chr1:2160134-2162177	Unknown
LNCA_21_P0008530	9.477173	P	9.952418	P	0.719344619766879	0	lncRNA	TCONS_00023086	NA	NA	NA	NA	XLOC_010979	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010979), lincRNA [TCONS_00023086]"	chr14:26860598-26860539	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00023086	TCONS_00023086	chr14	 26860539	 26860598	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18451_PI429285431	1.4234957	A	1.2132812	A	1.15686017317108	0	lncRNA	20175-1_{1..837}	lnc-AC091435.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC091435.1-1:1	chr5	 38845770	 38846606	-	lnc-AC091435.1-1	lnc-AC091435.1-1:1	ENSG00000249740	CTD-2127H9.1	OSMR	NA	chr5:38835770-38855931	inter
LNCA_21_P0014790	6.0634403	P	4.84921	P	2.32016965229869	0	lncRNA	XR_132582	XR_132582	XR_132582	NA	NA	LOC100652786	uncharacterized LOC100652786	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652786 (LOC100652786), miscRNA [XR_132582]"	chr12:124081285-124081226	hs|12q24.31	Agilent_HUMAN_G3V2	XR_132582	XR_132582	chr12	124081226	124081285	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46376_PI429285431	0.89679474	A	0.89135677	A	1.00377642636986	0	lncRNA	50593-1_{1..1891}	"gi|208022649|ref|NR_024183.1| Homo sapiens long intergenic non-protein coding RNA 521 (LINC00521), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|208022649|ref|NR_024183.1| Homo sapiens long intergenic non-protein coding RNA 521 (LINC00521), transcript variant 2, non-coding RNA"	Chr14	 94463642	 94465532	+	256369	NR_024183.1	NA	NA	NA	NA	NA	inter
CUST_47215_PI429285431	11.544645	P	11.529809	P	1.0103365887975	0	lncRNA	51290-1_{1..1137}	"gi|390517023|ref|NR_052002.1| Homo sapiens inosine triphosphatase (nucleoside triphosphate pyrophosphatase) (ITPA), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|390517023|ref|NR_052002.1| Homo sapiens inosine triphosphatase (nucleoside triphosphate pyrophosphatase) (ITPA), transcript variant 6, non-coding RNA"	Chr20	  3190006	  3191142	+	3704	NR_052002.1	NA	NA	NA	NA	NA	inter
CUST_16373_PI429285431	0.8974715	A	0.8933547	A	1.0028576235573	0	lncRNA	18071-1_{1..439}	lnc-DBC1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DBC1-1:2	chr9	121494992	121495430	-	lnc-DBC1-1	lnc-DBC1-1:2	XLOC_007842	linc-ASTN2-2	NA	NA	NA	inter
CUST_21986_PI429285431	5.6792927	P	5.6878347	P	0.994096630551174	0	lncRNA	23594-1_{1..413}	lnc-BTBD6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BTBD6-1:1	chr14	105639787	105640199	+	lnc-BTBD6-1	lnc-BTBD6-1:1	ENSG00000257816.1	AL512355.4	NUDT14	"hg19_refFlat_NUDT14:range=chr14:105639358-1056475465'pad=0,hg19_refFlat_NUDT14:range=chr14:105639358-1056475465'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50chr14:105639276-105647660"	NA	inner
CUST_49192_PI429285431	1.623035	A	1.9430696	A	0.801050665847282	0	lncRNA	53015-1_{1..425}	hg19_lincRNAsTranscripts_TCONS_l2_00020806 range=chr4:147150075-147151315 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020806 range=chr4:147150075-147151315 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	147150075	147150499	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24523_PI429285431	0.9071044	A	0.8985802	A	1.0059260149608	0	lncRNA	26074-1_{1..621}	lnc-BAG4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BAG4-1:1	chr8	 37981595	 37982215	+	lnc-BAG4-1	lnc-BAG4-1:1	ENSG00000240015.2	RP11-90P5.5	ASH2L	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-61.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20chr8:37971595-37992169"	NA	inner
LNCA_21_P0012562	0.9195691	A	0.9040783	A	1.01079525714822	0	lncRNA	TCONS_l2_00020303	NA	NA	NA	NA	XLOC_l2_010494	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010494), lincRNA [TCONS_l2_00020303]"	chr3:193723306-193723247	hs|3q29	Agilent_HUMAN_G3V2	TCONS_l2_00020303	TCONS_l2_00020303	chr3	193723247	193723306	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40447_PI429285431	4.2703724	P	4.8817363	P	0.654577582516251	0	lncRNA	41223-1_{1..3000}	n409346|NR_033709|lncRNA|Homosapiens||RefGeneNoncode|NR_033709||1.7795700|-0.1681109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409346|NR_033709|lncRNA|Homosapiens||RefGeneNoncode|NR_033709||1.7795700|-0.1681109	chr1	  3652547	  3655546	-	NA	NA	NA	NA	CCDC27	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50chr1:3668965-3673937"	NA	inter
CUST_25169_PI429285431	6.685767	P	6.9777546	P	0.816776011290122	0	lncRNA	26703-3_{6001..9000}	lnc-ZNF862-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:2	chr7	149536900	149539899	+	lnc-ZNF862-1	lnc-ZNF862-1:2	ENSG00000197558.7	SSPO	ZNF862	NA	chr7:149535509-149541054	inner
CUST_42090_PI429285431	0.92174125	A	0.9069932	A	1.01027499823816	0	lncRNA	44028-1_{1..87}	ENST00000385053 ncrna:miRNA chromosome:GRCh37:19:54189723:54189809:1 gene:ENSG00000207788 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385053 ncrna:miRNA chromosome:GRCh37:19:54189723:54189809:1 gene:ENSG00000207788 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54189723	 54189809	+	ENSG00000207788	ENST00000385053	NA	NA	NA	NA	NA	inter
CUST_16510_PI429285431	0.91115427	A	0.9108931	A	1.00018104563593	0	lncRNA	18210-1_{1..571}	lnc-EFR3B-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFR3B-3:5	chr2	 25250180	 25250750	+	lnc-EFR3B-3	lnc-EFR3B-3:5	XLOC_001398	linc-EFR3B	NA	NA	NA	inter
CUST_36882_PI429285431	0.91407967	A	0.9150439	A	0.999331869992409	0	lncRNA	38040-1_{1..250}	n345353|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_902|NULL|-1.3355300|-0.5660521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345353|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_902|NULL|-1.3355300|-0.5660521	chr18	 20494085	 20494334	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44567_PI429285431	15.062201	P	15.101396	P	0.973197824249092	0	lncRNA	49149-1_{1..1456}	"gi|164259358|ref|NR_004845.1| Homo sapiens actin, beta pseudogene (LOC644936), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|164259358|ref|NR_004845.1| Homo sapiens actin, beta pseudogene (LOC644936), non-coding RNA"	Chr5	 79594904	 79596359	-	644936	NR_004845.1	NA	NA	NA	NA	NA	inter
CUST_40229_PI429285431	1.6547154	A	1.2469698	A	1.32661118980729	0	lncRNA	41051-1_{1..548}	n408084|NR_027992|lncRNA|Homosapiens||RefGeneNoncode|NR_027992||1.8819400|-0.1831690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408084|NR_027992|lncRNA|Homosapiens||RefGeneNoncode|NR_027992||1.8819400|-0.1831690	chr15	 20874796	 20875343	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27215_PI429285431	6.3608484	P	6.4641504	P	0.930899933732479	0	lncRNA	28758-1_{1..406}	n324348|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042612|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042612|-0.8755320|-0.5461461	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324348|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042612|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042612|-0.8755320|-0.5461461	chr6	148023565	148023970	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46018_PI429285431	1.9924176	A	1.1484257	A	1.79501002323652	0	lncRNA	50301-1_{1..3000}	"gi|300244515|ref|NR_034000.1| Homo sapiens YY1 associated factor 2 (YAF2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300244515|ref|NR_034000.1| Homo sapiens YY1 associated factor 2 (YAF2), transcript variant 5, non-coding RNA"	Chr12	 42550906	 42553905	-	10138	NR_034000.1	NA	NA	NA	NA	NA	inter
CUST_19098_PI429285431	0.9308513	A	0.93718594	A	0.995618787779321	0	lncRNA	20787-1_{1..1047}	lnc-OR51B4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OR51B4-2:1	NA	NA	     1046	NA	NA	NA	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-32.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10"	NA	Unknown
CUST_40424_PI429285431	4.467362	P	4.967166	P	0.707202853010467	0	lncRNA	41208-2_{3001..6000}	n409293|NR_033579|lncRNA|Homosapiens||RefGeneNoncode|NR_033579||13.8952000|-0.1150642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409293|NR_033579|lncRNA|Homosapiens||RefGeneNoncode|NR_033579||13.8952000|-0.1150642	chr15	 82756446	 82759445	+	NA	NA	NA	NA	NA	"hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.00;hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.00;hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00;hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0,hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00"	NA	inter
CUST_18647_PI429285431	3.467492	P	3.3094745	P	1.11575285640945	0	lncRNA	20351-1_{1..554}	lnc-TLX1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TLX1-2:3	chr10	102997988	102998541	+	lnc-TLX1-2	lnc-TLX1-2:3	ENSG00000227128	RP11-107I14.1	LBX1	NA	chr10:102987988-102988717	inter
CUST_35635_PI429285431	0.901653	A	0.9197767	A	0.987516185900062	0	lncRNA	37050-1_{1..1112}	n342780|CR592158|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5283|NULL|-1.2868300|-0.4132430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342780|CR592158|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5283|NULL|-1.2868300|-0.4132430	chr11	 95554873	 95555984	-	NA	NA	NA	NA	CEP57	"hg19_refFlat_CEP57:range=chr11:95528706-955644205'pad=0,hg19_refFlat_CEP57:range=chr11:95528706-955644205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CEP57:range=chr11:95523863-955644205'pad=0,hg19_refFlat_CEP57:range=chr11:95523863-955644205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80chr11:95544873-95565854"	NA	inner
CUST_27760_PI429285431	1.4584773	A	1.396611	A	1.04381518864211	0	lncRNA	29341-1_{1..750}	n324976|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079600|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079600|0.0085356|-0.2220278	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324976|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079600|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079600|0.0085356|-0.2220278	chr20	 45454079	 45454828	-	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40"	NA	inter
CUST_36327_PI429285431	0.92288435	A	0.9132544	A	1.006697299972	0	lncRNA	37558-1_{1..886}	n344853|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_402|NULL|-1.3180300|-0.2258188	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344853|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_402|NULL|-1.3180300|-0.2258188	chr5	139516264	139517149	-	NA	NA	NA	NA	C5orf53	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50chr5:139506264-139508391"	NA	inter
CUST_16683_PI429285431	0.9136772	A	0.91595757	A	0.998420616504769	0	lncRNA	18387-1_{1..835}	lnc-ZNF354A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF354A-1:1	chr5	178133940	178134774	-	lnc-ZNF354A-1	lnc-ZNF354A-1:1	XLOC_005102	linc-CLK4	ZNF354A	NA	chr5:178138522-178144039	inter
CUST_29867_PI429285431	6.8520927	P	7.1802397	P	0.796558928661856	0	lncRNA	31630-1_{1..267}	n333856|L29140|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192783|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192783|1.1659900|-0.0272100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333856|L29140|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192783|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192783|1.1659900|-0.0272100	chr19	  8616971	  8617237	-	NA	NA	NA	NA	MYO1F	NA	chr19:8606971-8628335	inner
CUST_26432_PI429285431	0.9240815	A	0.91027325	A	1.00961709948877	0	lncRNA	27939-1_{1..440}	lnc-MSH6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MSH6-2:1	chr2	 48134457	 48134896	+	lnc-MSH6-2	lnc-MSH6-2:1	ENSG00000233230.1	AC079807.2	FBXO11	"hg19_refFlat_FBXO11:range=chr2:48035257-481328595'pad=0,hg19_refFlat_FBXO11:range=chr2:48035257-481328595'pad=0 3'pad=0 strand=- repeatMasking=none,-94.70chr2:48124457-48132932"	NA	inter
CUST_32211_PI429285431	1.5439415	A	1.3065618	A	1.17884962604409	0	lncRNA	33905-2_{3001..3505}	n338786|BC041859|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1208|NULL|-1.0312900|-0.3242755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338786|BC041859|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1208|NULL|-1.0312900|-0.3242755	chr13	 79173263	 79173767	+	NA	NA	NA	NA	POU4F1	NA	chr13:79173227-79177695	inter
CUST_32119_PI429285431	7.927149	P	7.8830943	P	1.03100740885509	0	lncRNA	33820-1_{1..536}	n338684|AY491432|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1101|NULL|-1.1304300|-0.2770643	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338684|AY491432|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1101|NULL|-1.1304300|-0.2770643	chr13	 45006279	 45006814	+	NA	NA	NA	NA	TSC22D1	NA	chr13:45007655-45016814	inner
CUST_46065_PI429285431	5.052864	P	5.089262	P	0.97508642481377	0	lncRNA	50339-1_{1..3000}	"gi|302191711|ref|NR_036476.1| Homo sapiens transmembrane protein 198B, pseudogene (TMEM198B), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302191711|ref|NR_036476.1| Homo sapiens transmembrane protein 198B, pseudogene (TMEM198B), transcript variant 1, non-coding RNA"	Chr12	 56223392	 56226391	+	440104	NR_036476.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20"	NA	inter
CUST_2047_PI429285431	0.8974037	A	0.89632016	A	1.00075133480672	0	lncRNA	2039-1_{1..566}	"transcript_id ""ENST00000503415.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503415.1"" | genecode_v17"	chr5	  4135795	  4136360	+	ENSG00000250921.1	ENST00000503415.1	CTD-2008N3.1	CTD-2008N3.1-001	NA	NA	NA	inter
LNCA_21_P0004494	0.92585504	A	0.91357696	A	1.00854683393403	0	lncRNA	TCONS_00010650	NA	NA	NA	NA	XLOC_004325	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004325), lincRNA [TCONS_00010650]"	chr5:29162649-29162708	hs|5p13.3	Agilent_HUMAN_G3V2	TCONS_00010650	TCONS_00010650	chr5	 29162649	 29162708	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002541	0.92630017	A	0.9141196	A	1.00847866978596	0	lncRNA	TCONS_00004576	NA	NA	NA	NA	XLOC_002486	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002486), lincRNA [TCONS_00004576]"	chr2:217726622-217726563	hs|2q35	Agilent_HUMAN_G3V2	TCONS_00004576	TCONS_00004576	chr2	217726563	217726622	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15629_PI429285431	1.9676504	A	3.0834575	P	0.461432939519895	0	lncRNA	17317-1_{1..305}	lnc-BNIP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BNIP1-2:1	chr5	172724396	172724700	+	lnc-BNIP1-2	lnc-BNIP1-2:1	XLOC_004638	linc-CPEB4-7	NA	NA	NA	inter
CUST_27804_PI429285431	0.92326087	A	1.0795075	A	0.897356633639849	0	lncRNA	29390-1_{1..1896}	n325032|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256764|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256764|-0.7812230|-0.2292683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325032|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256764|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256764|-0.7812230|-0.2292683	chr20	 23053704	 23055599	-	NA	NA	NA	NA	CD93	NA	chr20:23059993-23066977	inner
CUST_101_PI429201921	1.1760646	A	0.90550923	A	1.20627209656707	0	lncRNA	104-1_{1..2923}	TC01005098.hg.1	TCONS_00000415-XLOC_000606 // Rinn lincRNAs // linc-COG2-1 chr1:+:230728405-230731329 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:230728405-230731329	NA	Affy_HUMAN_HTA2.0	TCONS_00000415-XLOC_000606	linc-COG2-1	chr1	230728405	230731329	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37768_PI429285431	2.398038	A	2.7466862	A	0.785319594864738	0	lncRNA	38865-1_{1..639}	n346276|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1826|NULL|-1.3174700|-0.3618469	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346276|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1826|NULL|-1.3174700|-0.3618469	chr13	 88236872	 88237510	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008191	0.93014836	A	0.91809964	A	1.0083865076637	0	lncRNA	TCONS_00022072	NA	NA	NA	NA	XLOC_010676	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010676), lincRNA [TCONS_00022072]"	chr13:85458213-85455734	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00022072	TCONS_00022072	chr13	 85455734	 85458213	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2065_PI429285431	2.390797	A	3.456699	P	0.477673914725253	0	lncRNA	2056-1_{1..558}	"transcript_id ""ENST00000502644.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502644.1"" | genecode_v17"	chr5	  6337352	  6337909	-	ENSG00000250490.1	ENST00000502644.1	CTD-2324F15.2	CTD-2324F15.2-002	NA	NA	NA	inter
CUST_8845_PI429285431	1.3181235	A	1.0752134	A	1.18337727856427	0	lncRNA	10384-1_{1..1618}	lnc-GUSB-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GUSB-4:1	chr7	 65619245	 65620862	-	lnc-GUSB-4	lnc-GUSB-4:1	ENSG00000245589	ENST00000500514	CRCP	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-61.40chr7:65609245-65619555"	NA	inter
CUST_21384_PI429285431	0.9141582	A	0.9034085	A	1.00747895294857	0	lncRNA	23006-1_{1..524}	lnc-LAMC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LAMC2-1:1	chr1	183110277	183110800	+	lnc-LAMC2-1	lnc-LAMC2-1:1	ENSG00000224468.1	RP11-181K3.4	LAMC1	NA	chr1:183100277-183114727	inner
CUST_16861_PI429285431	1.1413949	A	0.90850294	A	1.17518831806655	0	lncRNA	18567-1_{1..411}	lnc-PPP1R3D-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP1R3D-3:3	chr20	 59045614	 59046024	-	lnc-PPP1R3D-3	lnc-PPP1R3D-3:3	XLOC_013827	linc-PPP1R3D-3	NA	NA	NA	inter
CUST_32490_PI429285431	3.9416971	P	4.300152	P	0.779999497684532	0	lncRNA	34158-2_{3001..3112}	n339094|BC040292|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1524|NULL|-0.6706910|-0.2621447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n339094|BC040292|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1524|NULL|-0.6706910|-0.2621447	chr2	202981348	202981459	-	NA	NA	NA	NA	LOC100652824	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chr2:202968348-202978327"	NA	inter
CUST_17753_PI429285431	2.5146084	A	2.9093258	A	0.760638358451167	0	lncRNA	19484-1_{1..1765}	lnc-SGCG-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SGCG-5:2	chr13	 23507571	 23509335	+	lnc-SGCG-5	lnc-SGCG-5:2	XLOC_010305	linc-SGCG-4	NA	NA	NA	inter
LNCA_21_P0010845	3.9571788	P	4.1288714	P	0.887800483823784	0	lncRNA	TCONS_l2_00003294	NA	NA	NA	NA	XLOC_l2_001771	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001771), lincRNA [TCONS_l2_00003294]"	chr10:124436478-124436537	hs|10q26.13	Agilent_HUMAN_G3V2	TCONS_l2_00003294	TCONS_l2_00003294	chr10	124436478	124436537	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43323_PI429285431	1.6747053	A	1.065192	A	1.52574440503362	0	lncRNA	48154-1_{1..657}	ENST00000589973 havana:lincRNA chromosome:GRCh37:9:85106861:85179347:1 gene:ENSG00000228430 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"gencode_v17,ensembl.GRCh37.72,"	>ENST00000589973 havana:lincRNA chromosome:GRCh37:9:85106861:85179347:1 gene:ENSG00000228430 gene_biotype:lincRNA transcript_biotype:lincRNA	chr9	 85106861	 85107517	+	ENSG00000228430	ENST00000589973	NA	NA	NA	NA	NA	inter
CUST_7807_PI429285431	1.7275758	A	2.5656083	A	0.559405948479592	0	lncRNA	9431-1_{1..2160}	lnc-PTN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PTN-2:1	chr7	136866355	136868514	-	lnc-PTN-2	lnc-PTN-2:1	ENSG00000234352	AC009264.1	NA	NA	NA	inter
CUST_18020_PI429285431	0.924215	A	2.7372127	A	0.284598960986983	0	lncRNA	19753-1_{1..425}	lnc-FGF9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGF9-1:1	chr13	 22326585	 22327009	+	lnc-FGF9-1	lnc-FGF9-1:1	XLOC_010301	linc-SGCG-8	NA	NA	NA	inter
CUST_32679_PI429285431	0.9293344	A	0.9258456	A	1.00242117821302	0	lncRNA	34329-2_{3001..5395}	n339310|BX648254|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1742|NULL|-0.0149092|-0.3014636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339310|BX648254|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1742|NULL|-0.0149092|-0.3014636	chr16	 83850971	 83853365	+	NA	NA	NA	NA	HSBP1	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr16:83841593-83846594"	NA	inter
CUST_23829_PI429285431	5.944628	P	6.1894903	P	0.843896339125683	0	lncRNA	25392-1_{1..1591}	lnc-NDUFS8-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFS8-1:7	chr11	 67795217	 67796807	+	lnc-NDUFS8-1	lnc-NDUFS8-1:7	ENSG00000006534.11	ALDH3B1	ALDH3B1	NA	chr11:67785217-67796743	inner
CUST_894_PI429285431	1.2560092	A	0.9044629	A	1.2759274509466	0	lncRNA	883-1_{1..470}	"transcript_id ""ENST00000441598.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441598.1"" | genecode_v17"	chr2	 60586855	 60587324	-	ENSG00000223929.1	ENST00000441598.1	AC007381.2	AC007381.2-002	NA	NA	NA	inter
CUST_45725_PI429285431	0.92416996	A	0.9251947	A	0.999289956558427	0	lncRNA	50085-8_{21001..24000}	"gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	Chr11	  2650558	  2653557	-	10984	NR_002728.3	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.02;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0,hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_14547_PI429285431	0.97148883	A	1.6270708	A	0.634819359281966	0	lncRNA	16215-1_{1..720}	lnc-GLB1L2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLB1L2-1:6	chr11	134350739	134351458	+	lnc-GLB1L2-1	lnc-GLB1L2-1:6	XLOC_009344	TCONS_00019546	NA	NA	NA	inter
CUST_10488_PI429285431	6.3614087	P	6.917412	P	0.680183870358343	0	lncRNA	12016-1_{1..761}	lnc-OBP2B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OBP2B-1:1	chr9	136126740	136127500	-	lnc-OBP2B-1	lnc-OBP2B-1:1	XLOC_007880	linc-OBP2B	ABO	NA	chr9:136116740-136136767	inter
CUST_3027_PI429285431	1.1004493	A	1.3359587	A	0.849385037524049	0	lncRNA	3006-1_{1..445}	"transcript_id ""ENST00000519159.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519159.1"" | genecode_v17"	chr8	 20207721	 20208165	+	ENSG00000253164.1	ENST00000519159.1	RP11-563N12.2	RP11-563N12.2-002	NA	NA	NA	inter
CUST_7761_PI429285431	0.920704	A	0.90781933	A	1.00897097281082	0	lncRNA	9388-1_{1..2579}	lnc-KLHL13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL13-1:1	chrX	117579012	117581590	-	lnc-KLHL13-1	lnc-KLHL13-1:1	ENSG00000250881	ENST00000504917	WDR44	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_WDR44:range=chrX:117480467-1175829505'pad=0,hg19_refFlat_WDR44:range=chrX:117480467-1175829505'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-19.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chrX:117569012-117583924"	NA	inner
CUST_35942_PI429285431	0.9136642	A	1.0505426	A	0.909484906049065	0	lncRNA	37304-1_{1..742}	n344579|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_127|NULL|-1.6503300|-0.2997794	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344579|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_127|NULL|-1.6503300|-0.2997794	chrX	 56778875	 56779616	-	NA	NA	NA	NA	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-20.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
CUST_25608_PI429285431	0.92030853	A	0.9094684	A	1.0075421050178	0	lncRNA	27137-1_{1..653}	lnc-RAD51C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAD51C-1:1	chr17	 56634170	 56634822	+	lnc-RAD51C-1	lnc-RAD51C-1:1	ENSG00000264672.1	RP11-112H10.4	TEX14	"hg19_refFlat_SEPT4:range=chr17:56597787-566093245'pad=0,hg19_refFlat_SEPT4:range=chr17:56597787-566093245'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPT4:range=chr17:56597787-566180625'pad=0,hg19_refFlat_SEPT4:range=chr17:56597787-566180625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPT4:range=chr17:56599243-566093245'pad=0,hg19_refFlat_SEPT4:range=chr17:56599243-566093245'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPT4:range=chr17:56597787-566035905'pad=0,hg19_refFlat_SEPT4:range=chr17:56597787-566035905'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C17orf47:range=chr17:56619176-566215475'pad=0,hg19_refFlat_C17orf47:range=chr17:56619176-566215475'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_SEPT4:range=chr17:56597787-566180345'pad=0,hg19_refFlat_SEPT4:range=chr17:56597787-566180345'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPT4:range=chr17:56597787-566065355'pad=0,hg19_refFlat_SEPT4:range=chr17:56597787-566065355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70chr17:56634038-56644286"	NA	inner
CUST_6108_PI429285431	1.1505466	A	1.8168949	A	0.630099556799293	0	lncRNA	6034-1_{1..393}	"transcript_id ""ENST00000585185.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585185.1"" | genecode_v17"	chr18	 19590257	 19590649	+	ENSG00000265758.1	ENST00000585185.1	RP11-595B24.1	RP11-595B24.1-002	NA	NA	NA	inter
CUST_25770_PI429285431	1.2985493	A	1.2249789	A	1.0523177530485	0	lncRNA	27295-1_{1..1064}	lnc-SH2B2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SH2B2-1:1	chr7	101818011	101819074	+	lnc-SH2B2-1	lnc-SH2B2-1:1	ENSG00000259643.1	CTA-305I2.2	CUX1	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50chr7:101808011-101828248"	NA	inner
CUST_34970_PI429285431	3.9877405	P	3.9330337	P	1.0386479966319	0	lncRNA	36387-1_{1..456}	n341892|AF543759|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4372|NULL|2.7327500|-0.2452152	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341892|AF543759|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4372|NULL|2.7327500|-0.2452152	chr12	 42863306	 42863761	-	NA	NA	NA	NA	PRICKLE1	NA	chr12:42853306-42983572	inner
LNCA_21_P0003309	4.753392	P	4.8825693	P	0.914352713222578	0	lncRNA	TCONS_00007321	NA	NA	NA	NA	XLOC_003354	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003354), lincRNA [TCONS_00007321]"	chr3:184097404-184096132	hs|3q27.1	Agilent_HUMAN_G3V2	TCONS_00007321	TCONS_00007321	chr3	184096132	184097404	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38266_PI429285431	1.4635742	A	1.0214404	A	1.35861228061099	0	lncRNA	39322-1_{1..2679}	n381826|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qtw.1||-1.0077300|-0.2920475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381826|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qtw.1||-1.0077300|-0.2920475	chr12	  8232080	  8234758	-	NA	NA	NA	NA	NECAP1	NA	chr12:8234807-8244759	inter
CUST_33238_PI429285431	4.839259	P	4.5527754	P	1.219663864178	0	lncRNA	34825-1_{1..2338}	n339939|AK097064|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2388|NULL|-0.9422800|-0.1534505	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339939|AK097064|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2388|NULL|-0.9422800|-0.1534505	chr10	  1657286	  1659623	-	NA	NA	NA	NA	ADARB2	NA	chr10:1647286-1669814	inner
CUST_31568_PI429285431	7.492532	P	7.271097	P	1.16589268396569	0	lncRNA	33325-1_{1..1682}	n338063|BC042068|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|450|NULL|4.7374900|-0.0415098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338063|BC042068|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|450|NULL|4.7374900|-0.0415098	chr22	 37602685	 37604366	-	NA	NA	NA	NA	SSTR3	NA	chr22:37602245-37608353	inner
LNCA_21_P0008233	1.0134722	A	2.4442651	A	0.370926976495854	0	lncRNA	TCONS_00022147	NA	NA	NA	NA	XLOC_010319	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010319), lincRNA [TCONS_00022147]"	chr13:25692991-25693050	hs|13q12.13	Agilent_HUMAN_G3V2	TCONS_00022147	TCONS_00022147	chr13	 25692991	 25693050	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27321_PI429285431	1.9808254	A	1.8954434	A	1.06096862981175	0	lncRNA	28881-1_{1..441}	n324476|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041236|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041236|-1.2792100|-0.5176961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324476|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041236|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041236|-1.2792100|-0.5176961	chr6	 75408819	 75409259	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011329	1.8813881	A	1.1373647	A	1.67484014010742	0	lncRNA	TCONS_l2_00008707	NA	NA	NA	NA	XLOC_l2_004706	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004706), lincRNA [TCONS_l2_00008707]"	chr15:69383430-69383489	hs|15q23	Agilent_HUMAN_G3V2	TCONS_l2_00008707	TCONS_l2_00008707	chr15	 69383430	 69383489	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28664_PI429285431	1.5378969	A	1.4772966	A	1.0428996171943	0	lncRNA	30356-1_{1..422}	n326043|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047266|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047266|-0.9787260|-0.3552778	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326043|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047266|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047266|-0.9787260|-0.3552778	chr10	 26906610	 26907031	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_52198_PI429285431	0.92045045	A	0.91035426	A	1.00702268987537	0	lncRNA	55714-1_{1..1316}	hg19_lincRNAsTranscripts_TCONS_l2_00017676 range=chr22:25916451-25918270 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017676 range=chr22:25916451-25918270 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 25916451	 25917766	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006234	3.236692	P	2.891565	A	1.27026279845998	0	lncRNA	TCONS_00016201	NA	NA	NA	NA	XLOC_007591	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007591), lincRNA [TCONS_00016201]"	chr9:134200451-134200510	hs|9q34.13	Agilent_HUMAN_G3V2	TCONS_00016201	TCONS_00016201	chr9	134200451	134200510	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3583_PI429285431	1.4812157	A	1.3943888	A	1.06203175226962	0	lncRNA	3553-1_{1..332}	"transcript_id ""ENST00000431209.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431209.1"" | genecode_v17"	chr10	  2541913	  2542244	+	ENSG00000237500.1	ENST00000431209.1	RP11-526P5.1	RP11-526P5.1-001	NA	NA	NA	inter
LNCA_21_P0014933	0.9199312	A	0.92022204	A	0.999798425392898	0	lncRNA	ENST00000420020	XR_108441	XR_108441	NA	NA	LOC100505957	NA	ENST00000420020	THC2679600	NA	"PREDICTED: Homo sapiens hypothetical LOC100505957, transcript variant 2 (LOC100505957), miscRNA [XR_108441]"	chr2:160255494-160260957	hs|2q24.2	Agilent_HUMAN_G3V2	ENST00000420020	ENST00000420020	chr2	160255494	160260957	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36817_PI429285431	0.90260565	A	2.4962525	A	0.331332849622782	0	lncRNA	37988-1_{1..3000}	n345296|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_845|NULL|-1.4014700|-0.2549410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n345296|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_845|NULL|-1.4014700|-0.2549410	chr15	 80488538	 80491537	-	NA	NA	NA	NA	ARNT2	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20chr15:80696692-80699989"	NA	inter
LNCA_21_P0012448	4.095698	P	4.6731	P	0.670169530270319	0	lncRNA	TCONS_l2_00019358	NA	NA	NA	NA	XLOC_l2_010245	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010245), lincRNA [TCONS_l2_00019358]"	chr3:75440798-75436010	hs|3p12.3	Agilent_HUMAN_G3V2	TCONS_l2_00019358	TCONS_l2_00019358	chr3	 75436010	 75440798	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36658_PI429285431	0.96141595	A	0.92130005	A	1.0281964242776	0	lncRNA	37849-1_{1..595}	n345154|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_703|NULL|-1.2990800|-0.3278129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345154|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_703|NULL|-1.2990800|-0.3278129	chr11	120039684	120040278	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26517_PI429285431	0.90432024	A	0.9084168	A	0.99716450860705	0	lncRNA	28024-1_{1..539}	lnc-CAST-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CAST-4:1	chr5	 95970155	 95970693	+	lnc-CAST-4	lnc-CAST-4:1	ENSG00000251314.1	CTD-2337A12.1	NA	NA	NA	inter
CUST_17625_PI429285431	8.242291	P	8.358209	P	0.922794941045604	0	lncRNA	19350-1_{1..695}	lnc-CLCN3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLCN3-1:4	chr4	170862158	170862852	+	lnc-CLCN3-1	lnc-CLCN3-1:4	XLOC_003772	linc-GALNTL6-7	NA	NA	NA	inter
CUST_10570_PI429285431	1.371671	A	1.0608032	A	1.24045362470882	0	lncRNA	12102-1_{1..265}	lnc-ZNF609-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF609-4:1	chr15	 65016836	 65017100	+	lnc-ZNF609-4	lnc-ZNF609-4:1	XLOC_011287	linc-PLEKHO2-2	NA	NA	NA	inter
CUST_28122_PI429285431	3.2235696	P	2.68107	P	1.45649384015052	0	lncRNA	29745-1_{1..553}	n325396|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323837|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323837|-0.9314590|-0.2801819	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325396|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323837|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323837|-0.9314590|-0.2801819	chr2	 19089895	 19090447	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39856_PI429285431	0.9093628	A	1.8903656	A	0.506627466809868	0	lncRNA	40755-1_{1..3000}	n406503|NR_024010|lncRNA|Homosapiens||RefGeneNoncode|NR_024010||0.0242179|-0.2691826	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406503|NR_024010|lncRNA|Homosapiens||RefGeneNoncode|NR_024010||0.0242179|-0.2691826	chr4	   506427	   509426	-	NA	NA	NA	NA	PIGG	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40chr4:496427-533320"	NA	inner
CUST_24363_PI429285431	1.0456102	A	1.3280512	A	0.822198702317689	0	lncRNA	25916-1_{1..586}	lnc-POTEC-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POTEC-2:1	chr18	 14825150	 14825735	-	lnc-POTEC-2	lnc-POTEC-2:1	ENSG00000265737.1	RP11-1157N2__B.2	ANKRD30B	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60chr18:14815150-14835248"	NA	inner
CUST_34714_PI429285431	0.9111588	A	1.0870388	A	0.885227392661962	0	lncRNA	36161-1_{1..2786}	n341621|AF220264|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4092|NULL|1.4916600|-0.2212647	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341621|AF220264|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4092|NULL|1.4916600|-0.2212647	chr8	140943415	140946200	+	NA	NA	NA	NA	TRAPPC9	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30chr8:140933415-140956180"	NA	inner
LNCA_21_P0008310	1.8143525	A	1.8902721	A	0.948737185873463	0	lncRNA	TCONS_00022453	NA	NA	NA	NA	XLOC_010782	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010782), lincRNA [TCONS_00022453]"	chr14:29532111-29532170	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022453	TCONS_00022453	chr14	 29532111	 29532170	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46138_PI429285431	1.5939739	A	1.1108041	A	1.3978114795367	0	lncRNA	50391-1_{1..3000}	"gi|300069000|ref|NR_033955.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|300069000|ref|NR_033955.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NR_033955.1	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.00"	NA	Unknown
CUST_10663_PI429285431	3.2826865	P	3.4717178	P	0.877194517346802	0	lncRNA	12196-1_{1..919}	lnc-GNAQ-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNAQ-3:1	chr9	 82182547	 82183465	-	lnc-GNAQ-3	lnc-GNAQ-3:1	XLOC_007747	linc-GNAQ-7	TLE4	NA	chr9:82186878-82192686	inter
CUST_2923_PI429285431	0.9138657	A	0.91165745	A	1.00153181429225	0	lncRNA	2904-1_{1..531}	"transcript_id ""ENST00000453278.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453278.1"" | genecode_v17"	chr7	125071401	125071931	+	ENSG00000227869.1	ENST00000453278.1	RP11-807H17.1	RP11-807H17.1-003	NA	NA	NA	inter
CUST_35855_PI429285431	0.91902804	A	0.9163209	A	1.00187820808573	0	lncRNA	37251-1_{1..2146}	n344522|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_70|NULL|-1.5987400|-0.3494109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344522|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_70|NULL|-1.5987400|-0.3494109	chr13	 54812997	 54815142	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2010_PI429285431	0.9227736	A	1.4784415	A	0.68034201895118	0	lncRNA	2001-1_{1..578}	"transcript_id ""ENST00000515222.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515222.1"" | genecode_v17"	chr4	188123140	188123717	+	ENSG00000249747.1	ENST00000515222.1	RP11-308K2.1	RP11-308K2.1-001	NA	NA	NA	inter
CUST_15849_PI429285431	3.905095	P	4.17932	P	0.826894397494439	0	lncRNA	17543-1_{1..215}	lnc-DHX37-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-5:4	chr12	126650625	126650839	-	lnc-DHX37-5	lnc-DHX37-5:4	XLOC_010240	linc-DHX37-7	NA	NA	NA	inter
CUST_41921_PI429285431	7.004114	P	4.7680793	P	4.71100446707266	0	lncRNA	43667-1_{1..92}	ENST00000581262 ncrna:miRNA chromosome:GRCh37:20:22713848:22713939:-1 gene:ENSG00000265151 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581262 ncrna:miRNA chromosome:GRCh37:20:22713848:22713939:-1 gene:ENSG00000265151 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 22713848	 22713939	-	ENSG00000265151	ENST00000581262	NA	NA	NA	NA	NA	inter
CUST_6984_PI429285431	2.4136198	A	1.921928	A	1.40609278709082	0	lncRNA	6932-1_{1..601}	"transcript_id ""ENST00000417782.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417782.1"" | genecode_v17"	chr22	 36081987	 36082587	+	ENSG00000228587.1	ENST00000417782.1	RP1-41P2.7	RP1-41P2.7-001	NA	NA	NA	inter
CUST_8077_PI429285431	6.0818424	P	4.166242	P	3.77270788813168	0	lncRNA	9683-1_{1..2194}	lnc-XRN2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-XRN2-2:1	chr20	 21227117	 21229310	+	lnc-XRN2-2	lnc-XRN2-2:1	ENSG00000088970	PLK1S1	PLK1S1	NA	chr20:21217117-21227260	inner
CUST_30631_PI429285431	8.943784	P	9.213654	P	0.829394278447083	0	lncRNA	32413-1_{1..531}	n335978|X73357|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323366|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323366|2.1266200|-0.0696760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335978|X73357|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323366|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323366|2.1266200|-0.0696760	chr19	  3053865	  3054395	-	NA	NA	NA	NA	TLE2	NA	chr19:3043865-3047633	inner
CUST_21185_PI429285431	1.1463131	A	0.91281164	A	1.17568490853428	0	lncRNA	22810-1_{1..414}	lnc-SLC16A8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC16A8-1:1	chr22	 38469872	 38470285	-	lnc-SLC16A8-1	lnc-SLC16A8-1:1	ENSG00000233739.1	RP5-1039K5.13	PICK1	NA	chr22:38459872-38471708	inner
CUST_46481_PI429285431	7.0306582	P	6.0381236	P	1.98967748865185	0	lncRNA	50677-1_{1..2323}	"gi|345478719|ref|NR_045107.1| Homo sapiens von Willebrand factor A domain containing 9 (VWA9), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|345478719|ref|NR_045107.1| Homo sapiens von Willebrand factor A domain containing 9 (VWA9), transcript variant 1, non-coding RNA"	Chr15	 65871095	 65873417	-	81556	NR_045107.1	NA	NA	NA	NA	NA	inter
CUST_17257_PI429285431	0.91870666	A	0.9227605	A	0.99719403632934	0	lncRNA	18975-1_{1..2333}	lnc-BOD1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BOD1-1:9	chr5	173141829	173144161	-	lnc-BOD1-1	lnc-BOD1-1:9	XLOC_005087	linc-BOD1-3	NA	"hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40"	NA	inter
CUST_17932_PI429285431	3.8982356	P	3.785177	P	1.0815186921771	0	lncRNA	19664-1_{1..459}	lnc-DYDC1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DYDC1-1:2	chr10	 82295336	 82295794	-	lnc-DYDC1-1	lnc-DYDC1-1:2	XLOC_008873	linc-DYDC1-5	SH2D4B	NA	chr10:82297658-82305433	inter
CUST_34995_PI429285431	0.9076737	A	0.90181977	A	1.00406587842162	0	lncRNA	36408-1_{1..1455}	n341920|BC028005|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4401|NULL|-1.1267600|-0.1076540	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341920|BC028005|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4401|NULL|-1.1267600|-0.1076540	chr12	 52400033	 52401487	-	NA	NA	NA	NA	ACVR1B	"hg19_refFlat_GRASP:range=chr12:52400804-524089835'pad=0,hg19_refFlat_GRASP:range=chr12:52400804-524089835'pad=0 3'pad=0 strand=+ repeatMasking=none,-110.90chr12:52390033-52390863"	NA	inner
CUST_6410_PI429285431	6.4187913	P	5.7177377	P	1.62569160166095	0	lncRNA	6348-1_{1..883}	"transcript_id ""ENST00000590677.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590677.1"" | genecode_v17"	chr19	 28206694	 28207576	-	ENSG00000261824.2	ENST00000590677.1	LINC00662	LINC00662-004	NA	NA	NA	inter
LNCA_21_P0004516	0.92780834	A	0.9134803	A	1.00998092095275	0	lncRNA	TCONS_00010734	NA	NA	NA	NA	XLOC_004458	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004458), lincRNA [TCONS_00010734]"	chr5:87643055-87643114	hs|5q14.3	Agilent_HUMAN_G3V2	TCONS_00010734	TCONS_00010734	chr5	 87643055	 87643114	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010021	4.175522	P	4.4873176	P	0.805638425238348	0	lncRNA	TCONS_00028340	NA	NA	NA	NA	XLOC_013688	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013688), lincRNA [TCONS_00028340]"	chr20:23051961-23051902	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028340	TCONS_00028340	chr20	 23051902	 23051961	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35521_PI429285431	6.563928	P	6.642653	P	0.946894106705055	0	lncRNA	36927-1_{1..1794}	n342626|BC047077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5128|NULL|-1.1456600|-0.3360887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n342626|BC047077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5128|NULL|-1.1456600|-0.3360887	chr4	171961760	171963553	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41289_PI429285431	0.9242371	A	0.8995985	A	1.01722484191124	0	lncRNA	42278-1_{1..72}	ENST00000580598 ncrna:miRNA chromosome:GRCh37:10:121137484:121137555:1 gene:ENSG00000265719 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580598 ncrna:miRNA chromosome:GRCh37:10:121137484:121137555:1 gene:ENSG00000265719 gene_biotype:miRNA transcript_biotype:miRNA	chr10	121137484	121137555	+	ENSG00000265719	ENST00000580598	NA	NA	GRK5	NA	chr10:121127484-121147555	inner
CUST_45696_PI429285431	1.2842461	A	0.95826536	A	1.25351628586815	0	lncRNA	50068-1_{1..3000}	"gi|374349253|ref|NR_046231.1| Homo sapiens uncharacterized LOC399829 (LOC399829), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|374349253|ref|NR_046231.1| Homo sapiens uncharacterized LOC399829 (LOC399829), non-coding RNA"	Chr10	134779038	134782037	+	399829	NR_046231.1	NA	NA	NA	NA	NA	inter
CUST_18091_PI429285431	5.5081	P	5.3775864	P	1.09468333959887	0	lncRNA	19826-1_{1..843}	lnc-C2orf27B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2orf27B-3:1	chr2	132230340	132231182	-	lnc-C2orf27B-3	lnc-C2orf27B-3:1	XLOC_002323	linc-LOC150786	TUBA3D	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40chr2:132233666-132240483"	NA	inter
CUST_49814_PI429285431	4.5485005	P	4.4636655	P	1.06056643820666	0	lncRNA	53568-1_{1..1315}	hg19_lincRNAsTranscripts_TCONS_l2_00025933 range=chr7:63575029-63611321 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025933 range=chr7:63575029-63611321 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 63575029	 63576343	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37351_PI429285431	0.92009115	A	0.90079445	A	1.01346530472797	0	lncRNA	38455-2_{3001..3459}	n345794|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1343|NULL|-1.6091300|-0.3116698	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345794|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1343|NULL|-1.6091300|-0.3116698	chr17	 14280082	 14280540	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80"	NA	inter
LNCA_21_P0001453	0.9232523	A	1.7472233	A	0.564884962075084	0	lncRNA	ENST00000449298	NA	BC036260	NA	Hs.652980	XLOC_000650	NA	ENST00000449298	THC2608842	NA	"BROAD Institute lincRNA (XLOC_000650), lincRNA [TCONS_00001363]"	chr1:247803577-247803636	hs|1q44	Agilent_HUMAN_G3V2	ENST00000449298	ENST00000449298	chr1	247803577	247803636	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9068_PI429285431	0.9051318	A	1.6240463	A	0.607554401040613	0	lncRNA	10591-1_{1..726}	lnc-KLF14-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF14-1:3	chr7	130597710	130598435	-	lnc-KLF14-1	lnc-KLF14-1:3	ENSG00000226380	AC058791.1	NA	NA	NA	inter
CUST_36244_PI429285431	3.0328178	P	2.966557	A	1.04699953388957	0	lncRNA	37489-1_{1..956}	n344781|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_330|NULL|-1.4864800|-0.2810912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344781|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_330|NULL|-1.4864800|-0.2810912	chr5	 54152967	 54153922	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41809_PI429285431	6.2545543	P	3.9505405	P	4.93829766429425	0	lncRNA	43400-1_{1..91}	ENST00000385111 ncrna:miRNA chromosome:GRCh37:X:106672219:106672309:1 gene:ENSG00000207846 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385111 ncrna:miRNA chromosome:GRCh37:X:106672219:106672309:1 gene:ENSG00000207846 gene_biotype:miRNA transcript_biotype:miRNA	chrX	106672219	106672309	+	ENSG00000207846	ENST00000385111	NA	NA	NA	NA	NA	inter
CUST_16775_PI429285431	0.89844173	A	0.8927696	A	1.00393935987768	0	lncRNA	18484-1_{1..534}	lnc-C22orf42-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C22orf42-2:2	chr22	 32517398	 32517931	-	lnc-C22orf42-2	lnc-C22orf42-2:2	XLOC_014347	linc-C22orf24-2	SLC5A1	NA	chr22:32507398-32509016	inter
CUST_8955_PI429285431	5.3580203	P	5.6054726	P	0.842382692306838	0	lncRNA	10489-1_{1..1729}	lnc-ID3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ID3-4:1	chr1	 23945768	 23947496	-	lnc-ID3-4	lnc-ID3-4:1	ENSG00000247296	XLOC_000738	NA	NA	NA	inter
CUST_20053_PI429285431	3.7959757	P	3.9207692	P	0.917135307874132	0	lncRNA	21704-1_{1..589}	lnc-WDR60-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR60-7:1	chr7	158332103	158332691	+	lnc-WDR60-7	lnc-WDR60-7:1	ENSG00000225365.1	AC078942.1	PTPRN2	NA	chr7:158322103-158342571	inner
CUST_12421_PI429285431	1.662977	A	1.2097924	A	1.36905897978492	0	lncRNA	14034-1_{1..726}	lnc-NDUFS5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDUFS5-2:1	chr1	 39513563	 39514288	+	lnc-NDUFS5-2	lnc-NDUFS5-2:1	XLOC_000153	linc-MACF1-1	NA	NA	NA	inter
CUST_40685_PI429285431	3.368176	P	4.2209415	P	0.553722288617426	0	lncRNA	41420-1_{1..548}	n410243|NR_037172_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037172_4||-0.8980170|-0.2316433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410243|NR_037172_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037172_4||-0.8980170|-0.2316433	chr6	  3435316	  3435863	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3425316-3446880	inner
CUST_25672_PI429285431	3.5584803	P	3.217353	A	1.26674602346663	0	lncRNA	27201-1_{1..1447}	lnc-GLP2R-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLP2R-1:1	chr17	 10048831	 10050277	+	lnc-GLP2R-1	lnc-GLP2R-1:1	ENSG00000264194.1	CTB-104H12.6	GAS7	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20chr17:10038831-10060277"	NA	inner
CUST_27953_PI429285431	0.9013313	A	0.90738547	A	0.99581236184624	0	lncRNA	29557-1_{1..797}	n325201|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329371|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329371|-0.4101910|-0.3707393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325201|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329371|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329371|-0.4101910|-0.3707393	chr2	105127002	105127798	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	inter
CUST_17651_PI429285431	4.1502204	P	4.4871607	P	0.791718627212215	0	lncRNA	19380-1_{1..249}	lnc-H3F3C-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-H3F3C-3:1	chr12	 32112062	 32112310	-	lnc-H3F3C-3	lnc-H3F3C-3:1	XLOC_010047	linc-H3F3C-1	C12orf35	NA	chr12:32106787-32122260	inter
CUST_24640_PI429285431	4.1192236	P	4.3716125	P	0.839505161282782	0	lncRNA	26189-1_{1..537}	lnc-RASSF7-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASSF7-1:3	chr11	   559779	   560315	+	lnc-RASSF7-1	lnc-RASSF7-1:3	ENSG00000254815.1	RP11-496I9.1	LRRC56	NA	chr11:549779-554916	inner
CUST_43121_PI429285431	11.35477	P	11.639351	P	0.820980010320896	0	lncRNA	47936-1_{1..974}	ENST00000590594 havana:3prime_overlapping_ncrna chromosome:GRCh37:16:67977450:67978423:-1 gene:ENSG00000267660 gene_biotype:3prime_overlapping_ncrna transcript_biotype:3prime_overlapping_ncrna	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000590594 havana:3prime_overlapping_ncrna chromosome:GRCh37:16:67977450:67978423:-1 gene:ENSG00000267660 gene_biotype:3prime_overlapping_ncrna transcript_biotype:3prime_overlapping_ncrna	chr16	 67977450	 67978423	-	ENSG00000267660	ENST00000590594	NA	NA	LCAT	NA	chr16:67973787-67978015	inner
CUST_31808_PI429285431	1.8632445	A	2.279973	A	0.749121430704914	0	lncRNA	33545-1_{1..1097}	n338350|BC030138|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|744|NULL|-0.8694920|-0.1286886	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n338350|BC030138|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|744|NULL|-0.8694920|-0.1286886	chr19	 16697718	 16698814	-	NA	NA	NA	NA	MED26	NA	chr19:16687718-16708796	inner
CUST_24420_PI429285431	2.8417227	A	3.1050766	A	0.833148806699304	0	lncRNA	25973-1_{1..448}	lnc-IFT46-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IFT46-1:4	chr11	118401219	118401666	-	lnc-IFT46-1	lnc-IFT46-1:4	ENSG00000255435.2	RP11-770J1.3	MLL	"hg19_refFlat_MLL:range=chr11:118307228-1183928875'pad=0,hg19_refFlat_MLL:range=chr11:118307228-1183928875'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80chr11:118391219-118397539"	NA	inner
CUST_14004_PI429285431	2.7435727	A	2.9117515	P	0.889965428804797	0	lncRNA	15650-1_{1..319}	lnc-C3orf30-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C3orf30-6:1	chr3	117374762	117375080	+	lnc-C3orf30-6	lnc-C3orf30-6:1	XLOC_002771	linc-C3orf30-5	NA	NA	NA	inter
CUST_30240_PI429285431	4.484187	P	5.012332	P	0.693445785364451	0	lncRNA	32015-1_{1..337}	n335110|AL360185|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250479|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250479|1.8313200|-0.0910491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335110|AL360185|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250479|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250479|1.8313200|-0.0910491	chr11	  6477382	  6477718	-	NA	NA	NA	NA	TRIM3	NA	chr11:6469843-6487841	inner
CUST_2325_PI429285431	0.90470594	A	0.9111323	A	0.995555492869523	0	lncRNA	2317-1_{1..807}	"transcript_id ""ENST00000509367.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509367.1"" | genecode_v17"	chr5	117523162	117523968	+	ENSG00000249797.1	ENST00000509367.1	CTD-3179P9.1	CTD-3179P9.1-001	NA	NA	NA	inter
CUST_4476_PI429285431	2.7324703	A	2.5964775	A	1.0988487335831	0	lncRNA	4425-1_{1..456}	"transcript_id ""ENST00000545853.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000545853.1"" | genecode_v17"	chr12	127094580	127095035	-	ENSG00000256732.1	ENST00000545853.1	RP11-407A16.3	RP11-407A16.3-001	NA	NA	NA	inter
CUST_44517_PI429285431	0.9131087	A	0.9168005	A	0.997444310587885	0	lncRNA	49114-1_{1..1498}	"gi|324073379|ref|NR_037910.1| Homo sapiens prolactin receptor (PRLR), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|324073379|ref|NR_037910.1| Homo sapiens prolactin receptor (PRLR), transcript variant 7, non-coding RNA"	Chr5	 35048861	 35050358	-	5618	NR_037910.1	NA	NA	NA	NA	NA	inter
CUST_30510_PI429285431	9.880711	P	10.331331	P	0.731728319231818	0	lncRNA	32290-1_{1..281}	n335666|CR613939|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000293134|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000293134|-1.1325600|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335666|CR613939|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000293134|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000293134|-1.1325600|-1.0000000	chr1	 52818208	 52818488	-	NA	NA	NA	NA	CC2D1B	NA	chr1:52816265-52828489	inner
CUST_2652_PI429285431	1.9494768	A	0.90422297	A	2.06372942241375	0	lncRNA	2638-1_{1..349}	"transcript_id ""ENST00000426166.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426166.1"" | genecode_v17"	chr6	142572984	142573332	-	ENSG00000237494.1	ENST00000426166.1	RP11-753B14.1	RP11-753B14.1-001	NA	NA	NA	inter
CUST_8979_PI429285431	6.4468584	P	7.1086626	P	0.632087329171227	0	lncRNA	10510-1_{1..926}	lnc-POM121L4P-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-POM121L4P-1:4	chr22	 21058599	 21059524	+	lnc-POM121L4P-1	lnc-POM121L4P-1:4	ENSG00000226287	TMEM191A	PI4KA	NA	chr22:21061979-21068628	inter
CUST_15900_PI429285431	7.0852757	P	7.364296	P	0.82415048834263	0	lncRNA	17592-1_{1..406}	lnc-GRIK1-AS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-GRIK1-AS2-1:1	chr21	 30872493	 30872898	+	lnc-GRIK1-AS2-1	lnc-GRIK1-AS2-1:1	XLOC_013906	linc-KRTAP13-1-4	NA	NA	NA	inter
CUST_15805_PI429285431	3.6649294	P	4.701213	P	0.48758187418456	0	lncRNA	17495-1_{1..343}	lnc-TOMM20-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TOMM20-2:11	chr1	235096029	235096371	-	lnc-TOMM20-2	lnc-TOMM20-2:11	XLOC_001265	linc-IRF2BP2-1	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_27880_PI429285431	3.3968897	P	3.9014435	P	0.704878350239353	0	lncRNA	29473-1_{1..613}	n325116|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000131980|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000131980|-0.5108830|-0.2330024	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325116|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000131980|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000131980|-0.5108830|-0.2330024	chr2	220477015	220477627	-	NA	NA	NA	NA	STK11IP	NA	chr2:220467015-220481173	inner
CUST_7851_PI429285431	3.6244397	P	3.636888	P	0.991408614656935	0	lncRNA	9475-1_{1..615}	lnc-TMPRSS15-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMPRSS15-3:3	chr21	 20125066	 20125680	-	lnc-TMPRSS15-3	lnc-TMPRSS15-3:3	ENSG00000224141	AL109763.2	NA	NA	NA	inter
CUST_28646_PI429285431	1.693799	A	0.9170956	A	1.71321165850657	0	lncRNA	30337-1_{1..408}	n326024|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047438|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047438|-0.3422380|-0.1899984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326024|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047438|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047438|-0.3422380|-0.1899984	chr10	 31052185	 31052592	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40"	NA	inter
CUST_49661_PI429285431	4.5723934	P	4.4680996	P	1.07496806420266	0	lncRNA	53442-1_{1..618}	hg19_lincRNAsTranscripts_TCONS_l2_00026193 range=chr7:128171486-128218953 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026193 range=chr7:128171486-128218953 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	128171486	128172103	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17501_PI429285431	2.294861	A	2.2036319	A	1.06527735602679	0	lncRNA	19226-1_{1..1097}	lnc-MFNG-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MFNG-1:2	chr22	 37862227	 37863323	-	lnc-MFNG-1	lnc-MFNG-1:2	XLOC_014369	linc-ELFN2	MFNG	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr22:37865101-37872735"	NA	inter
CUST_48023_PI429285431	0.9050144	A	0.89944744	A	1.00386617708359	0	lncRNA	51906-1_{1..3000}	"gi|410173643|ref|XR_172313.1| PREDICTED: Homo sapiens uncharacterized LOC100996873 (LOC100996873), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173643|ref|XR_172313.1| PREDICTED: Homo sapiens uncharacterized LOC100996873 (LOC100996873), misc_RNA"	NA	NA	NA	NA	NA	XR_172313.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90"	NA	Unknown
CUST_39188_PI429285431	5.632833	P	6.315897	P	0.622841077057536	0	lncRNA	40163-1_{1..996}	n385938|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009wbh.1||2.0810500|-0.0830748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385938|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009wbh.1||2.0810500|-0.0830748	chr1	 70385004	 70385999	+	NA	NA	NA	NA	LRRC7	NA	chr1:70375004-70396000	inner
CUST_28571_PI429285431	2.4590974	A	2.1538758	A	1.23560841375258	0	lncRNA	30249-1_{1..674}	n325928|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049128|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049128|1.1036500|-0.3315077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325928|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049128|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049128|1.1036500|-0.3315077	chr10	 86029726	 86030399	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11028_PI429285431	1.4731946	A	2.418821	A	0.51920407083949	0	lncRNA	12574-2_{3001..4013}	lnc-BTG2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTG2-2:3	chr1	203370603	203371615	+	lnc-BTG2-2	lnc-BTG2-2:3	XLOC_000529	linc-PRELP	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-17.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
CUST_20103_PI429285431	0.9161777	A	0.89995974	A	1.01130485558905	0	lncRNA	21751-1_{1..2469}	lnc-SNX20-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNX20-2:1	chr16	 50647502	 50649970	-	lnc-SNX20-2	lnc-SNX20-2:1	ENSG00000205414.1	RP11-401P9.6	NKD1	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NKD1:range=chr16:50582465-506676925'pad=0,hg19_refFlat_NKD1:range=chr16:50582465-506676925'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-23.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chr16:50637502-50657595"	NA	inner
CUST_6556_PI429285431	2.4332209	A	2.8128428	A	0.768639008352629	0	lncRNA	6504-1_{1..511}	"transcript_id ""ENST00000602554.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602554.1"" | genecode_v17"	chr19	 49834874	 49835384	-	ENSG00000197813.4	ENST00000602554.1	CTC-301O7.4	CTC-301O7.4-003	SLC6A16	NA	chr19:49824874-49828474	inner
CUST_24049_PI429285431	0.90741265	A	0.90033245	A	1.0049196827621	0	lncRNA	25601-1_{1..1879}	lnc-DCAF8L1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCAF8L1-2:1	chrX	 27417054	 27418932	-	lnc-DCAF8L1-2	lnc-DCAF8L1-2:1	ENSG00000228933.2	RP11-268G12.1	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90"	NA	inter
CUST_17497_PI429285431	0.91609526	A	0.91965145	A	0.997538072454772	0	lncRNA	19223-1_{1..436}	lnc-ULK4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ULK4-4:1	chr3	 40762243	 40762678	-	lnc-ULK4-4	lnc-ULK4-4:1	XLOC_003094	linc-CX3CR1-3	NA	NA	NA	inter
CUST_40120_PI429285431	2.0525022	A	1.9008529	A	1.11083866570857	0	lncRNA	40963-1_{1..3000}	n407667|NR_027136|lncRNA|Homosapiens||RefGeneNoncode|NR_027136||2.1882900|-0.1812133	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n407667|NR_027136|lncRNA|Homosapiens||RefGeneNoncode|NR_027136||2.1882900|-0.1812133	chr1	 15438310	 15441309	-	NA	NA	NA	NA	KAZN	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_KAZN:range=chr1:14925494-154411315'pad=0,hg19_refFlat_KAZN:range=chr1:14925494-154411315'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr1:15428310-15444544"	NA	inter
CUST_20740_PI429285431	0.90023506	A	1.0058208	A	0.929427514683588	0	lncRNA	22374-1_{1..350}	lnc-PTPN6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPN6-1:1	chr12	  7073364	  7073713	+	lnc-PTPN6-1	lnc-PTPN6-1:1	ENSG00000257084.1	U47924.27	PHB2	NA	chr12:7074515-7079916	inter
CUST_11475_PI429285431	3.8320253	P	4.391838	P	0.678390231013865	0	lncRNA	13041-1_{1..2636}	lnc-COL1A1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL1A1-4:3	chr17	 48359829	 48362464	-	lnc-COL1A1-4	lnc-COL1A1-4:3	XLOC_012515	linc-COL1A1-2	TMEM92	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40chr17:48349829-48358846"	NA	inter
CUST_43666_PI429285431	7.529914	P	7.6857886	P	0.897588066220561	0	lncRNA	48421-1_{1..926}	"gi|310118767|ref|XR_108306.1| PREDICTED: Homo sapiens uncharacterized LOC100505991, transcript variant 1 (LOC100505991), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118767|ref|XR_108306.1| PREDICTED: Homo sapiens uncharacterized LOC100505991, transcript variant 1 (LOC100505991), misc_RNA"	NA	NA	NA	NA	NA	XR_108306.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002651	0.9463082	A	0.92129904	A	1.01748615233392	0	lncRNA	TCONS_00005105	NA	NA	NA	NA	XLOC_002010	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002010), lincRNA [TCONS_00005105]"	chr2:20737776-20737717	hs|2p24.1	Agilent_HUMAN_G3V2	TCONS_00005105	TCONS_00005105	chr2	 20737717	 20737776	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35991_PI429285431	0.9163209	A	0.9165897	A	0.999813699393979	0	lncRNA	37330-2_{3001..6000}	n344605|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_153|NULL|-1.5217100|-0.2534201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344605|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_153|NULL|-1.5217100|-0.2534201	chr2	239441308	239444307	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00"	NA	inter
CUST_10919_PI429285431	6.036474	P	6.408019	P	0.772954287054348	0	lncRNA	12463-1_{1..3000}	lnc-CRYBA4-1:28	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,ncbi,"	>lnc-CRYBA4-1:28	chr22	 27064121	 27067120	+	lnc-CRYBA4-1	lnc-CRYBA4-1:28	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
CUST_44017_PI429285431	5.4326563	P	3.8401484	P	3.01573131881681	0	lncRNA	48704-1_{1..3000}	"gi|371118720|ref|NR_045768.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371118720|ref|NR_045768.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 7, non-coding RNA"	Chr2	175936978	175939977	-	1386	NR_045768.1	NA	NA	NA	NA	NA	inter
CUST_45989_PI429285431	0.9207331	A	0.9221796	A	0.998997865076248	0	lncRNA	50278-1_{1..1222}	"gi|410170637|ref|XR_171059.1| PREDICTED: Homo sapiens uncharacterized LOC101060038 (LOC101060038), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|410170637|ref|XR_171059.1| PREDICTED: Homo sapiens uncharacterized LOC101060038 (LOC101060038), misc_RNA"	Chr12	 10706089	 10707310	+	101060038	XR_171059.2	NA	NA	NA	NA	NA	inter
CUST_5239_PI429285431	5.9283805	P	5.4203134	P	1.4221435531958	0	lncRNA	5180-1_{1..2441}	"transcript_id ""ENST00000563464.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563464.1"" | genecode_v17"	chr15	 72908151	 72910591	+	ENSG00000260672.1	ENST00000563464.1	RP11-1006G14.1	RP11-1006G14.1-001	NA	NA	NA	inter
CUST_9966_PI429285431	4.0849166	P	4.649968	P	0.675931334162281	0	lncRNA	11490-1_{1..614}	lnc-ELK3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELK3-1:1	chr12	 96545622	 96546235	+	lnc-ELK3-1	lnc-ELK3-1:1	XLOC_009846	linc-ELK3-1	NA	NA	NA	inter
CUST_13938_PI429285431	0.9219411	A	0.92457646	A	0.998174975033295	0	lncRNA	15585-1_{1..2695}	lnc-SOX11-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOX11-3:8	chr2	  6122430	  6125124	+	lnc-SOX11-3	lnc-SOX11-3:8	XLOC_001327	linc-RSAD2-2	NA	NA	NA	inter
CUST_32817_PI429285431	3.7113075	P	4.3791375	P	0.629452753960886	0	lncRNA	34452-1_{1..596}	n339465|BC034802|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1903|NULL|-1.0805400|-0.2662182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339465|BC034802|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1903|NULL|-1.0805400|-0.2662182	chr21	 33678774	 33679369	-	NA	NA	NA	NA	MRAP	"hg19_refFlat_MRAP:range=chr21:33671283-336843075'pad=0,hg19_refFlat_MRAP:range=chr21:33671283-336843075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_MRAP:range=chr21:33671283-336869645'pad=0,hg19_refFlat_MRAP:range=chr21:33671283-336869645'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40chr21:33668774-33687095"	NA	inner
CUST_40414_PI429285431	6.420306	P	6.6375556	P	0.860203794277215	0	lncRNA	41199-1_{1..2270}	n409280|NR_033488_7|lncRNA|Homosapiens||RefGeneNoncode|NR_033488_7||-0.1120950|-0.3268977	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409280|NR_033488_7|lncRNA|Homosapiens||RefGeneNoncode|NR_033488_7||-0.1120950|-0.3268977	chr6	  3164344	  3166613	-	NA	NA	NA	NA	TUBB2A	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40chr6:3154344-3157783"	NA	inter
CUST_1711_PI429285431	9.813439	P	10.038637	P	0.8554776091907	0	lncRNA	1695-1_{1..641}	"transcript_id ""ENST00000505347.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505347.1"" | genecode_v17"	chr4	 19173958	 19174598	-	ENSG00000248238.1	ENST00000505347.1	RP11-3J1.1	RP11-3J1.1-001	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50"	NA	inter
CUST_41305_PI429285431	0.9058856	A	0.9021927	A	1.00256300211166	0	lncRNA	42310-1_{1..75}	ENST00000384846 ncrna:miRNA chromosome:GRCh37:5:95414842:95414916:1 gene:ENSG00000207578 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384846 ncrna:miRNA chromosome:GRCh37:5:95414842:95414916:1 gene:ENSG00000207578 gene_biotype:miRNA transcript_biotype:miRNA	chr5	 95414842	 95414916	+	ENSG00000207578	ENST00000384846	NA	NA	NA	NA	NA	inter
CUST_35274_PI429285431	1.1750653	A	1.2554419	A	0.945810720797742	0	lncRNA	36674-1_{1..2042}	n342283|BX538249|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4775|NULL|1.2845700|-0.2824834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342283|BX538249|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4775|NULL|1.2845700|-0.2824834	chr1	101491408	101493449	+	NA	NA	NA	NA	DPH5	NA	chr1:101481408-101491362	inter
CUST_7366_PI429285431	1.9121343	A	2.2588406	A	0.786377364448046	0	lncRNA	9011-1_{1..2874}	lnc-TRIM16L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRIM16L-1:1	chr17	 18576100	 18578973	+	lnc-TRIM16L-1	lnc-TRIM16L-1:1	ENSG00000248683	AC026271.1	ZNF286B	"hg19_refFlat_FOXO3:range=chr6:108882412-1089860585'pad=0,hg19_refFlat_FOXO3:range=chr6:108882412-1089860585'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.60chr17:18566100-18585572"	NA	inner
CUST_38475_PI429285431	0.9288373	A	0.92868495	A	1.00010560654894	0	lncRNA	39493-1_{1..638}	n382967|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ebp.1||-0.8563190|-0.2988352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382967|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ebp.1||-0.8563190|-0.2988352	chr16	 31237192	 31237829	+	NA	NA	NA	NA	PYDC1	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20chr16:31227283-31228398"	NA	inter
LNCA_19_P00315863	2.2739906	A	0.93457305	A	2.53049136266672	0	lncRNA	ENST00000417922	NA	NA	NA	NA	XLOC_l2_008434	NA	ENST00000417922	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008434), lincRNA [TCONS_l2_00016084]"	chr2:216708430-216708371	hs|2q35	Agilent_HUMAN_G3V2	ENST00000417922	ENST00000417922	chr2	216708371	216708430	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45026_PI429285431	4.9298477	P	3.6851954	P	2.36961437875523	0	lncRNA	49526-1_{1..2055}	"gi|223718698|ref|NR_026879.1| Homo sapiens family with sequence similarity 185, member A (FAM185A), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223718698|ref|NR_026879.1| Homo sapiens family with sequence similarity 185, member A (FAM185A), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_026879.1	NA	NA	NA	NA	NA	Unknown
CUST_3732_PI429285431	2.9854193	A	0.91905683	A	4.18829328370953	0	lncRNA	3701-1_{1..790}	"transcript_id ""ENST00000524517.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524517.1"" | genecode_v17"	chr10	 77029577	 77030366	+	ENSG00000226051.2	ENST00000524517.1	ZNF503-AS1	ZNF503-AS1-003	NA	NA	NA	inter
CUST_16833_PI429285431	0.95196533	A	0.92529845	A	1.01865596058736	0	lncRNA	18540-1_{1..1232}	lnc-ZNF404-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF404-1:3	chr19	 44405189	 44406420	-	lnc-ZNF404-1	lnc-ZNF404-1:3	XLOC_013350	linc-ZNF404	NA	NA	NA	inter
CUST_46120_PI429285431	2.159405	A	1.4653214	A	1.61785644410336	0	lncRNA	50380-1_{1..2453}	"gi|307548896|ref|NR_024261.2| Homo sapiens golgin A2 pseudogene 5 (GOLGA2P5), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|307548896|ref|NR_024261.2| Homo sapiens golgin A2 pseudogene 5 (GOLGA2P5), transcript variant 2, non-coding RNA"	Chr12	100558828	100561280	-	55592	NR_024261.2	NA	NA	NA	NA	NA	inter
CUST_39423_PI429285431	1.0296794	A	1.1065936	A	0.948083347891529	0	lncRNA	40381-3_{6001..9000}	n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	chr13	 19414542	 19417541	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
LNCA_21_P0008748	2.6556516	A	1.942624	A	1.63924057506059	0	lncRNA	TCONS_00023699	NA	NA	NA	NA	XLOC_011504	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011504), lincRNA [TCONS_00023699]"	chr15:65128246-65128187	hs|15q22.31	Agilent_HUMAN_G3V2	TCONS_00023699	TCONS_00023699	chr15	 65128187	 65128246	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7188_PI429285431	0.91739714	A	0.90879494	A	1.00598040230395	0	lncRNA	7502-1_{1..328}	"transcript_id ""ENST00000410851.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410851.1"" | genecode_v17"	chr3	130530612	130530939	-	ENSG00000222783.1	ENST00000410851.1	RN7SKP212	RN7SKP212-201	NA	NA	NA	inter
CUST_43086_PI429285431	0.9146098	A	0.90899503	A	1.00389944512419	0	lncRNA	47338-1_{1..212}	ENST00000411266 ncrna:snRNA chromosome:GRCh37:2:232366701:232366912:-1 gene:ENSG00000223198 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000411266 ncrna:snRNA chromosome:GRCh37:2:232366701:232366912:-1 gene:ENSG00000223198 gene_biotype:snRNA transcript_biotype:snRNA	chr2	232366701	232366912	-	ENSG00000223198	ENST00000411266	NA	NA	NA	NA	NA	inter
CUST_5987_PI429285431	1.5061569	A	1.4675621	A	1.02711292060348	0	lncRNA	5914-1_{1..559}	"transcript_id ""ENST00000590438.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590438.1"" | genecode_v17"	chr17	 75525131	 75525689	+	ENSG00000267665.1	ENST00000590438.1	RP11-13K12.2	RP11-13K12.2-004	NA	NA	NA	inter
CUST_489_PI429285431	3.3932495	P	3.2466145	P	1.10698448339481	0	lncRNA	480-1_{1..657}	"transcript_id ""ENST00000426575.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426575.1"" | genecode_v17"	chr1	175873898	175874554	-	ENSG00000227740.1	ENST00000426575.1	RP11-318C24.2	RP11-318C24.2-001	RFWD2	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90chr1:175891081-175899649"	NA	inter
CUST_8696_PI429285431	0.89767957	A	0.8989504	A	0.999119515622581	0	lncRNA	10243-1_{1..571}	lnc-FAM84B-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM84B-7:3	chr8	126963158	126963728	-	lnc-FAM84B-7	lnc-FAM84B-7:3	ENSG00000245164	RP11-622O11.2	NA	NA	NA	inter
CUST_45190_PI429285431	10.327765	P	9.601573	P	1.65426687911872	0	lncRNA	49658-1_{1..1624}	"gi|297206886|ref|NR_033698.1| Homo sapiens farnesyltransferase, CAAX box, alpha (FNTA), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|297206886|ref|NR_033698.1| Homo sapiens farnesyltransferase, CAAX box, alpha (FNTA), transcript variant 4, non-coding RNA"	Chr8	 42911442	 42913065	+	2339	NR_033698.1	NA	NA	NA	NA	NA	inter
CUST_44119_PI429285431	3.7039614	P	3.6698606	P	1.02391843832807	0	lncRNA	48785-1_{1..1338}	"gi|410170462|ref|XR_171086.1| PREDICTED: Homo sapiens uncharacterized LOC101059963 (LOC101059963), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170462|ref|XR_171086.1| PREDICTED: Homo sapiens uncharacterized LOC101059963 (LOC101059963), misc_RNA"	NA	NA	NA	NA	NA	XR_171086.1	NA	NA	NA	NA	NA	Unknown
CUST_28461_PI429285431	4.188966	P	4.337714	P	0.902032925500157	0	lncRNA	30126-1_{1..771}	n325793|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044224|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044224|-1.2766800|-0.2446417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325793|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044224|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044224|-1.2766800|-0.2446417	chr13	 24653578	 24654348	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10675_PI429285431	2.979053	P	3.271834	P	0.816326954551268	0	lncRNA	12208-1_{1..336}	lnc-CYBB-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CYBB-1:2	chrX	 37758102	 37758437	+	lnc-CYBB-1	lnc-CYBB-1:2	XLOC_007952	linc-CXorf27-1	NA	NA	NA	inter
CUST_8864_PI429285431	5.5682335	P	5.6292872	P	0.95856375816528	0	lncRNA	10403-1_{1..741}	lnc-BHLHE41-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BHLHE41-2:9	chr12	 26110952	 26111692	-	lnc-BHLHE41-2	lnc-BHLHE41-2:9	ENSG00000246695	RP11-877E17.2	NA	NA	NA	inter
CUST_32068_PI429285431	0.9236031	A	0.9169188	A	1.004643953583	0	lncRNA	33777-2_{3001..3111}	n338628|AK055410|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1040|NULL|-0.9936090|-0.2437467	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338628|AK055410|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1040|NULL|-0.9936090|-0.2437467	chr2	  2955872	  2955982	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33231_PI429285431	0.9228823	A	0.91204524	A	1.00753996100893	0	lncRNA	34819-1_{1..1945}	n339929|AK097505|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2378|NULL|-1.0390900|-0.1596210	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339929|AK097505|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2378|NULL|-1.0390900|-0.1596210	chr18	 77180835	 77182779	+	NA	NA	NA	NA	NFATC1	NA	chr18:77170835-77192780	inner
CUST_21691_PI429285431	4.8877673	P	4.626126	P	1.19884180642461	0	lncRNA	23302-1_{1..1716}	lnc-NRIP1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NRIP1-1:3	chr21	 16229863	 16231578	-	lnc-NRIP1-1	lnc-NRIP1-1:3	ENSG00000235609.1	AF127936.7	NA	NA	NA	inter
CUST_14045_PI429285431	1.7237471	A	0.9049082	A	1.7639857421452	0	lncRNA	15692-1_{1..1194}	lnc-DHX37-10:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-10:7	chr12	127232477	127233670	-	lnc-DHX37-10	lnc-DHX37-10:7	XLOC_010244	linc-DHX37-4	NA	NA	NA	inter
CUST_5005_PI429285431	4.907484	P	5.0756407	P	0.88997906189153	0	lncRNA	4947-2_{3001..3452}	"transcript_id ""ENST00000398461.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000398461.1"" | genecode_v17"	chr14	101302306	101302757	+	ENSG00000214548.9	ENST00000398461.1	MEG3	MEG3-011	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90"	NA	inter
CUST_20028_PI429285431	0.90400827	A	0.89916384	A	1.00336354706783	0	lncRNA	21681-1_{1..722}	lnc-SLC25A32-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A32-3:4	chr8	104511198	104511919	-	lnc-SLC25A32-3	lnc-SLC25A32-3:4	ENSG00000253477.1	RP11-1C8.4	RIMS2	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60chr8:104512976-104521448"	NA	inter
CUST_31997_PI429285431	3.8053286	P	3.9524922	P	0.903024102424782	0	lncRNA	33719-1_{1..257}	n338557|AF230317|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|962|NULL|-0.9813800|-0.2156763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338557|AF230317|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|962|NULL|-0.9813800|-0.2156763	chr1	231829207	231829463	+	NA	NA	NA	NA	DISC1	NA	chr1:231819207-231839464	inter
CUST_6524_PI429285431	0.9317428	A	0.99415946	A	0.957658600055948	0	lncRNA	6467-1_{1..749}	"transcript_id ""ENST00000487420.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000487420.2"" | genecode_v17"	chr19	 42041702	 42042450	+	ENSG00000270164.1	ENST00000487420.2	AC006129.4	AC006129.4-003	NA	NA	NA	inter
CUST_27061_PI429285431	1.2718918	A	0.9364389	A	1.26177345060809	0	lncRNA	28595-1_{1..394}	n324172|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051453|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051453|-1.1849500|-0.2807109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324172|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051453|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051453|-1.1849500|-0.2807109	chr9	    62700	    63093	+	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_14445_PI429285431	1.7496932	A	1.8249664	A	0.949162363133101	0	lncRNA	16108-1_{1..1153}	lnc-SERGEF-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERGEF-2:1	chr11	 17718366	 17719518	-	lnc-SERGEF-2	lnc-SERGEF-2:1	XLOC_009385	linc-USH1C	NA	NA	NA	inter
CUST_22443_PI429285431	5.5960345	P	5.9398065	P	0.787978406392088	0	lncRNA	24030-1_{1..1882}	lnc-TNPO3-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNPO3-1:9	chr7	128519772	128521653	-	lnc-TNPO3-1	lnc-TNPO3-1:9	ENSG00000135253.8	KCP	KCP	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.71;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-62.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20chr7:128516919-128529866"	NA	inner
CUST_35421_PI429285431	2.62389	A	1.8639982	A	1.69336362018884	0	lncRNA	36831-1_{1..3000}	n342485|AK126307|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4979|NULL|-1.0325700|-0.3769077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342485|AK126307|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4979|NULL|-1.0325700|-0.3769077	chr3	   577913	   580912	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90"	NA	inter
CUST_12007_PI429285431	0.9205723	A	0.90724826	A	1.0092782997756	0	lncRNA	13588-1_{1..281}	lnc-FRMD4A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRMD4A-1:1	chr10	 13570473	 13570753	-	lnc-FRMD4A-1	lnc-FRMD4A-1:1	XLOC_008735	linc-BEND7-1	NA	NA	NA	inter
LNCA_21_P0005045	1.7090911	A	2.2688637	A	0.678409087269386	0	lncRNA	TCONS_00012234	NA	NA	NA	NA	XLOC_005791	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005791), lincRNA [TCONS_00012234]"	chr6:102580400-102575851	hs|6q16.3	Agilent_HUMAN_G3V2	TCONS_00012234	TCONS_00012234	chr6	102575851	102580400	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46905_PI429285431	9.545362	P	8.85693	P	1.6115310660453	0	lncRNA	51025-1_{1..2879}	"gi|223890248|ref|NR_026899.1| Homo sapiens Rho GTPase activating protein 27 pseudogene (LOC146880), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223890248|ref|NR_026899.1| Homo sapiens Rho GTPase activating protein 27 pseudogene (LOC146880), transcript variant 2, non-coding RNA"	Chr17	 62745780	 62748658	-	146880	NR_026899.1	NA	NA	NA	"hg19_refFlat_SNRNP200:range=chr2:96940750-969711755'pad=0,hg19_refFlat_SNRNP200:range=chr2:96940750-969711755'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40"	NA	inter
CUST_38115_PI429285431	0.9002554	A	0.89494133	A	1.00369022481274	0	lncRNA	39188-2_{3001..4096}	n381200|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001eiw.1||0.2415650|-0.3432812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n381200|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001eiw.1||0.2415650|-0.3432812	chr1	142621798	142622893	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80"	NA	inter
CUST_70_PI429285431	2.7487078	A	2.7240825	A	1.0172154643036	0	lncRNA	66-1_{1..1678}	"transcript_id ""ENST00000360166.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000360166.3"" | genecode_v17"	chr17	 40905951	 40907628	-	ENSG00000197291.4	ENST00000360166.3	RAMP2-AS1	RAMP2-AS1-201	EZH1	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80chr17:40895951-40897071"	NA	inter
CUST_38239_PI429285431	8.7869	P	8.722269	P	1.04581741549148	0	lncRNA	39300-1_{1..2320}	n381730|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001onl.1||0.1819610|-0.2815529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381730|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001onl.1||0.1819610|-0.2815529	chr11	 67826216	 67828535	-	NA	NA	NA	NA	CHKA	"hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30chr11:67820326-67838536"	NA	inner
CUST_32676_PI429285431	0.90045154	A	0.89291203	A	1.00523966940449	0	lncRNA	34327-1_{1..1557}	n339308|BC039544|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1740|NULL|-0.8675220|-0.3759940	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339308|BC039544|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1740|NULL|-0.8675220|-0.3759940	chr16	 82986834	 82988390	-	NA	NA	NA	NA	CDH13	NA	chr16:82976834-83033903	inner
CUST_52062_PI429285431	5.599332	P	6.1515255	P	0.681982441106321	0	lncRNA	55592-2_{3001..4218}	hg19_lincRNAsTranscripts_TCONS_l2_00017584 range=chr22:18975276-19008329 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017584 range=chr22:18975276-19008329 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 18978276	 18979493	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27520_PI429285431	4.706793	P	4.9746127	P	0.830573818099978	0	lncRNA	29090-2_{3001..6000}	n324698|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320766|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320766|0.2124910|-0.2625664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324698|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320766|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320766|0.2124910|-0.2625664	chr22	 25587596	 25590595	+	NA	NA	NA	NA	KIAA1671	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50chr22:25574596-25593415"	NA	inner
CUST_30660_PI429285431	0.9195404	A	0.9064122	A	1.00914130363874	0	lncRNA	32442-1_{1..434}	n336098|X87308|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324278|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324278|1.8054500|-0.3461769	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336098|X87308|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324278|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324278|1.8054500|-0.3461769	chr12	 68549136	 68549569	-	NA	NA	NA	NA	IFNG	NA	chr12:68548550-68553521	inner
CUST_14599_PI429285431	4.936961	P	4.8842793	P	1.03719107715171	0	lncRNA	16266-1_{1..864}	lnc-TBC1D19-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBC1D19-4:3	chr4	 26860235	 26861098	+	lnc-TBC1D19-4	lnc-TBC1D19-4:3	XLOC_003483	linc-STIM2-1	STIM2	NA	chr4:26862313-26870539	inter
CUST_39116_PI429285431	6.2941456	P	5.0298753	P	2.40205685662033	0	lncRNA	40092-2_{3001..3939}	n385685|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bnb.1||-1.1638100|-0.3543083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385685|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bnb.1||-1.1638100|-0.3543083	chr9	125609834	125610772	-	NA	NA	NA	NA	RC3H2	NA	chr9:125599786-125620773	inter
CUST_17493_PI429285431	1.4993534	A	0.90325296	A	1.51162516354762	0	lncRNA	19220-1_{1..756}	lnc-GJA10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-GJA10-1:1	chr6	 90630844	 90631599	+	lnc-GJA10-1	lnc-GJA10-1:1	XLOC_005383	linc-MANEA-10	BACH2	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30chr6:90636247-90641479"	NA	inter
CUST_40215_PI429285431	4.5086327	P	3.5845788	P	1.89743951849824	0	lncRNA	41040-2_{3001..4622}	n408042|NR_027822_6|lncRNA|Homosapiens||RefGeneNoncode|NR_027822_6||6.0445700|-0.2749678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408042|NR_027822_6|lncRNA|Homosapiens||RefGeneNoncode|NR_027822_6||6.0445700|-0.2749678	chr6	 30230338	 30231959	+	NA	NA	NA	NA	NA	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80"	NA	inter
CUST_29257_PI429285431	2.1560743	A	1.4079926	A	1.67955809677957	0	lncRNA	31008-1_{1..234}	n332353|FJ169506|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558446|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558446|-1.0897000|-0.1111300	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332353|FJ169506|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558446|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558446|-1.0897000|-0.1111300	chr21	 46572509	 46572742	+	NA	NA	NA	NA	ADARB1	NA	chr21:46562509-46605691	inter
CUST_7970_PI429285431	4.1747255	P	2.9297152	A	2.37020246368406	0	lncRNA	9582-1_{1..588}	lnc-WDR74-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR74-1:9	chr11	 62622896	 62623483	-	lnc-WDR74-1	lnc-WDR74-1:9	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62632960	inter
CUST_16249_PI429285431	3.715428	P	4.062356	P	0.786256530549005	0	lncRNA	17954-1_{1..206}	lnc-SORL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SORL1-1:1	chr11	121759989	121760194	+	lnc-SORL1-1	lnc-SORL1-1:1	XLOC_009305	linc-UBASH3B-4	NA	NA	NA	inter
CUST_38809_PI429285431	0.92512125	A	0.92465764	A	1.00032140160281	0	lncRNA	39802-2_{3001..4222}	n384558|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003iwb.1||-1.2145300|-0.2927861	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384558|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003iwb.1||-1.2145300|-0.2927861	chr4	184943455	184944676	+	NA	NA	NA	NA	STOX2	NA	chr4:184930455-184938875	inter
LNCA_21_P0013780	4.4120955	P	4.574762	P	0.893372344532023	0	lncRNA	THC2497183	NA	NA	NA	NA	XLOC_l2_015578	NA	NA	THC2497183	NA	"BROAD Institute lincRNA (XLOC_l2_015578), lincRNA [TCONS_l2_00030289]"	chrX:100790605-100790664	hs|Xq22.1	Agilent_HUMAN_G3V2	THC2497183	THC2497183	chrX	100790605	100790664	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44382_PI429285431	0.9444619	A	0.92902905	A	1.01075465646195	0	lncRNA	49002-1_{1..779}	"gi|157057146|ref|NR_003720.1| Homo sapiens casein alpha s2-like A, pseudogene (CSN1S2AP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|157057146|ref|NR_003720.1| Homo sapiens casein alpha s2-like A, pseudogene (CSN1S2AP), non-coding RNA"	Chr4	 70933103	 70933881	+	286828	NR_003720.1	NA	NA	NA	NA	NA	inter
CUST_3241_PI429285431	9.433566	P	9.702486	P	0.829940605993301	0	lncRNA	3220-1_{1..435}	"transcript_id ""ENST00000518704.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518704.1"" | genecode_v17"	chr8	 99383583	 99384017	-	ENSG00000254267.1	ENST00000518704.1	KB-1458E12.1	KB-1458E12.1-001	NA	NA	NA	inter
CUST_30431_PI429285431	1.2798461	A	1.0325822	A	1.18695389723575	0	lncRNA	32211-1_{1..820}	n335566|CR541836|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000268707|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000268707|2.9261000|-0.0685412	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335566|CR541836|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000268707|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000268707|2.9261000|-0.0685412	chr16	  1290940	  1291759	+	NA	NA	NA	NA	TPSAB1	NA	chr16:1290678-1292555	inner
CUST_17818_PI429285431	0.9658745	A	1.0052173	A	0.973098128009297	0	lncRNA	19554-1_{1..2056}	lnc-XPO7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-XPO7-2:1	chr8	 21466266	 21468321	+	lnc-XPO7-2	lnc-XPO7-2:1	XLOC_006736	linc-XPO7-2	NA	NA	NA	inter
CUST_48618_PI429285431	3.5159178	P	3.445253	P	1.05020050899343	0	lncRNA	52465-1_{1..564}	hg19_lincRNAsTranscripts_TCONS_l2_00014653 range=chr2:74622325-74640230 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014653 range=chr2:74622325-74640230 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 74622325	 74622888	-	NA	NA	NA	NA	LOC100130009	NA	chr2:74645222-74645569	inter
CUST_45883_PI429285431	1.2821407	A	0.9056761	A	1.29815675307416	0	lncRNA	50206-1_{1..3000}	"gi|403048747|ref|NR_073142.1| Homo sapiens progesterone receptor (PGR), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|403048747|ref|NR_073142.1| Homo sapiens progesterone receptor (PGR), transcript variant 5, non-coding RNA"	Chr11	100900355	100903354	-	5241	NR_073142.2	NA	NA	NA	NA	NA	inter
CUST_28157_PI429285431	0.933063	A	1.0947437	A	0.893982998474346	0	lncRNA	29783-1_{1..558}	n325434|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323603|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323603|-1.0905500|-0.3658516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325434|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323603|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323603|-1.0905500|-0.3658516	chr2	 11906198	 11906755	+	NA	NA	NA	NA	LPIN1	NA	chr2:11896198-11933861	inner
CUST_3016_PI429285431	0.9823561	A	0.9108077	A	1.05084391690157	0	lncRNA	2995-1_{1..504}	"transcript_id ""ENST00000530150.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530150.1"" | genecode_v17"	chr8	 12651752	 12652255	+	ENSG00000255494.1	ENST00000530150.1	LINC00681	LINC00681-001	NA	NA	NA	inter
CUST_44012_PI429285431	7.0330997	P	5.1295576	P	3.74130634180625	0	lncRNA	48701-2_{3001..4267}	"gi|371118923|ref|NR_045771.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 10, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371118923|ref|NR_045771.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 10, non-coding RNA"	Chr2	175939978	175941244	-	1386	NR_045771.1	NA	NA	NA	NA	NA	inter
CUST_47208_PI429285431	8.270794	P	8.395084	P	0.91745544359506	0	lncRNA	51283-1_{1..3000}	"gi|219281870|ref|NR_026052.1| Homo sapiens CENPB DNA-binding domains containing 1 pseudogene (MGC2752), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219281870|ref|NR_026052.1| Homo sapiens CENPB DNA-binding domains containing 1 pseudogene (MGC2752), non-coding RNA"	Chr19	 59086766	 59089765	+	65996	NR_026052.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30"	NA	inter
CUST_39629_PI429285431	1.1498511	A	1.1866403	A	0.974822057025775	0	lncRNA	40568-1_{1..2085}	n405205|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000039945||-0.2376640|-0.3193664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405205|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000039945||-0.2376640|-0.3193664	chr6	 17236147	 17238231	+	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40"	NA	inter
CUST_24098_PI429285431	0.91547394	A	1.3386658	A	0.745772828496952	0	lncRNA	25649-1_{1..563}	lnc-PMFBP1-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PMFBP1-4:5	chr16	 72661434	 72661996	-	lnc-PMFBP1-4	lnc-PMFBP1-4:5	ENSG00000261008.2	AC004158.2	NA	NA	NA	inter
CUST_4596_PI429285431	1.7230153	A	1.6494682	A	1.05230075790749	0	lncRNA	4545-1_{1..498}	"transcript_id ""ENST00000451826.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451826.1"" | genecode_v17"	chr13	 38628057	 38628554	-	ENSG00000223685.1	ENST00000451826.1	LINC00571	LINC00571-002	NA	NA	NA	inter
CUST_1052_PI429285431	4.458824	P	6.023045	P	0.338160252538302	0	lncRNA	1042-1_{1..708}	"transcript_id ""ENST00000603720.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603720.1"" | genecode_v17"	chr2	121623953	121624660	-	ENSG00000271709.1	ENST00000603720.1	RP11-297J22.1	RP11-297J22.1-001	GLI2	NA	chr2:121613953-121634978	inner
CUST_2535_PI429285431	0.91438454	A	0.90297705	A	1.00793841296215	0	lncRNA	2523-1_{1..817}	"transcript_id ""ENST00000573382.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000573382.2"" | genecode_v17"	chr6	 44184676	 44185492	+	ENSG00000262179.2	ENST00000573382.2	RP1-302G2.5	RP1-302G2.5-001	SLC29A1	NA	chr6:44187242-44195973	inter
CUST_857_PI429285431	4.218117	P	4.3281727	P	0.926552288592972	0	lncRNA	851-1_{1..2156}	"transcript_id ""ENST00000422351.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000422351.1"" | genecode_v17"	chr2	 43254992	 43257147	-	ENSG00000231826.1	ENST00000422351.1	AC016735.2	AC016735.2-001	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60"	NA	inter
CUST_19187_PI429285431	2.5636907	A	3.3310876	P	0.587476521242212	0	lncRNA	20857-1_{1..570}	lnc-OR4N4-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR4N4-1:4	chr15	 22318877	 22319446	+	lnc-OR4N4-1	lnc-OR4N4-1:4	ENSG00000259176.1	RP11-69H14.6	OR4M2	NA	chr15:22308877-22328937	inter
CUST_32445_PI429285431	2.947278	A	3.7766783	P	0.56276312331122	0	lncRNA	34117-1_{1..1244}	n339044|BC001713|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1473|NULL|-0.5756840|-0.0807060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339044|BC001713|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1473|NULL|-0.5756840|-0.0807060	chr16	  2285689	  2286932	-	NA	NA	NA	NA	ECI1	"hg19_refFlat_DNASE1L2:range=chr16:2286818-22884195'pad=0,hg19_refFlat_DNASE1L2:range=chr16:2286818-22884195'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.00chr16:2289873-2296914"	NA	inner
LNCA_21_P0008806	3.8133793	P	4.399931	P	0.665932704988607	0	lncRNA	TCONS_00023844	NA	NA	NA	NA	XLOC_011616	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011616), lincRNA [TCONS_00023844]"	chr15:102153784-102148173	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_00023844	TCONS_00023844	chr15	102148173	102153784	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43547_PI429285431	5.760871	P	5.776602	P	0.989155333719542	0	lncRNA	48325-1_{1..1359}	"gi|215277006|ref|NR_024538.1| Homo sapiens glutathione S-transferase mu 4 (GSTM4), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|215277006|ref|NR_024538.1| Homo sapiens glutathione S-transferase mu 4 (GSTM4), transcript variant 3, non-coding RNA"	Chr1	110198698	110200056	+	2948	NR_024538.1	NA	NA	NA	NA	NA	inter
CUST_12805_PI429285431	1.1641207	A	0.9157765	A	1.18784302935557	0	lncRNA	14432-1_{1..574}	lnc-SPATA19-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPATA19-1:2	chr11	133689475	133690048	-	lnc-SPATA19-1	lnc-SPATA19-1:2	XLOC_009608	linc-OPCML	NA	NA	NA	inter
CUST_45306_PI429285431	8.896485	P	9.023108	P	0.915973013996913	0	lncRNA	49748-1_{1..2166}	"gi|224451067|ref|NR_027054.1| Homo sapiens MIR31 host gene (non-protein coding) (MIR31HG), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224451067|ref|NR_027054.1| Homo sapiens MIR31 host gene (non-protein coding) (MIR31HG), non-coding RNA"	Chr9	 21454267	 21456432	-	554202	NR_027054.1	NA	NA	NA	NA	NA	inter
CUST_33849_PI429285431	3.0203552	A	3.6330001	P	0.653996626941901	0	lncRNA	35394-1_{1..1315}	n340635|CR609746|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3097|NULL|0.7999490|-0.2227947	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340635|CR609746|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3097|NULL|0.7999490|-0.2227947	chr17	 36828519	 36829833	-	NA	NA	NA	NA	C17orf96	NA	chr17:36827956-36831187	inner
CUST_9582_PI429285431	6.3584814	P	6.4940677	P	0.910299819672627	0	lncRNA	11098-1_{1..303}	lnc-DIO3.1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DIO3.1-4:2	chr14	101758105	101758407	+	lnc-DIO3.1-4	lnc-DIO3.1-4:2	XLOC_010936	linc-DIO3-4	NA	NA	NA	inter
CUST_45193_PI429285431	3.7112148	P	4.1659107	P	0.729663958900739	0	lncRNA	49661-1_{1..3000}	"gi|239582729|ref|NR_027765.1| Homo sapiens SET binding factor 1 pseudogene 1 (SBF1P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239582729|ref|NR_027765.1| Homo sapiens SET binding factor 1 pseudogene 1 (SBF1P1), non-coding RNA"	Chr8	 56361757	 56364756	-	100133234	NR_027765.1	NA	NA	NA	NA	NA	inter
CUST_22259_PI429285431	1.1191971	A	0.9007883	A	1.16344966827563	0	lncRNA	23860-1_{1..783}	lnc-LOX-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LOX-4:3	chr5	121804679	121805461	-	lnc-LOX-4	lnc-LOX-4:3	ENSG00000250328.1	CTC-210G5.1	SNCAIP	"hg19_refFlat_SNCAIP:range=chr5:121726876-1217992705'pad=0,hg19_refFlat_SNCAIP:range=chr5:121726876-1217992705'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_SNCAIP:range=chr5:121726830-1217991915'pad=0,hg19_refFlat_SNCAIP:range=chr5:121726830-1217991915'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50chr5:121794679-121799794"	NA	inter
CUST_50121_PI429285431	4.4719133	P	4.5220056	P	0.965874532724881	0	lncRNA	53848-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00029375 range=chr9:69494689-69650121 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029375 range=chr9:69494689-69650121 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 69497689	 69500688	-	NA	NA	NA	NA	LOC100132154	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_GXYLT1:range=chr12:42481588-425384485'pad=0,hg19_refFlat_GXYLT1:range=chr12:42481588-425384485'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00chr9:69484689-69660121"	NA	inter
CUST_5085_PI429285431	0.92106175	A	0.917225	A	1.00266297187241	0	lncRNA	5025-1_{1..1499}	"transcript_id ""ENST00000433371.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433371.1"" | genecode_v17"	chr14	106938445	106939943	+	ENSG00000187156.4	ENST00000433371.1	LINC00221	LINC00221-001	NA	NA	NA	inter
CUST_43991_PI429285431	1.0674478	A	1.2173157	A	0.901332989155617	0	lncRNA	48690-1_{1..3000}	"gi|363001194|ref|NR_045628.1| Homo sapiens sodium channel, voltage-gated, type VII, alpha subunit (SCN7A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|363001194|ref|NR_045628.1| Homo sapiens sodium channel, voltage-gated, type VII, alpha subunit (SCN7A), transcript variant 2, non-coding RNA"	Chr2	167260083	167263082	-	6332	NR_045628.1	NA	NA	NA	NA	NA	inter
CUST_2504_PI429285431	2.2386386	A	2.6722791	A	0.740391121421647	0	lncRNA	2496-1_{1..799}	"transcript_id ""ENST00000442852.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442852.1"" | genecode_v17"	chr6	 30807303	 30808101	-	ENSG00000237923.1	ENST00000442852.1	XXbac-BPG27H4.8	XXbac-BPG27H4.8-001	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30"	NA	inter
CUST_41504_PI429285431	0.91619205	A	0.9119068	A	1.00297472469409	0	lncRNA	42724-1_{1..83}	ENST00000584484 ncrna:miRNA chromosome:GRCh37:10:35368526:35368608:-1 gene:ENSG00000266228 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584484 ncrna:miRNA chromosome:GRCh37:10:35368526:35368608:-1 gene:ENSG00000266228 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 35368526	 35368608	-	ENSG00000266228	ENST00000584484	NA	NA	CUL2	NA	chr10:35358526-35378608	inner
CUST_31822_PI429285431	0.9283756	A	0.91636354	A	1.00836088410596	0	lncRNA	33558-1_{1..1611}	n338369|BC071772|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|764|NULL|-1.1934500|-0.3271631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338369|BC071772|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|764|NULL|-1.1934500|-0.3271631	chr1	174083004	174084614	-	NA	NA	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10"	NA	inter
CUST_43915_PI429285431	0.91916645	A	0.9182351	A	1.00064577104701	0	lncRNA	48628-1_{1..1546}	"gi|310118981|ref|XR_109928.1| PREDICTED: Homo sapiens AHPA9419 (LOC100131131), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118981|ref|XR_109928.1| PREDICTED: Homo sapiens AHPA9419 (LOC100131131), misc_RNA"	NA	NA	NA	NA	NA	XR_109928.1	NA	NA	NA	NA	NA	Unknown
CUST_3284_PI429285431	1.9929935	A	2.0758755	A	0.94416964091807	0	lncRNA	3262-1_{1..414}	"transcript_id ""ENST00000518922.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518922.1"" | genecode_v17"	chr8	122684013	122684426	-	ENSG00000254209.1	ENST00000518922.1	RP11-3G20.1	RP11-3G20.1-001	NA	NA	NA	inter
CUST_37335_PI429285431	2.9828832	A	1.0831549	A	3.73142916704679	0	lncRNA	38439-2_{3001..4112}	n345777|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1326|NULL|-1.3663800|-0.2559466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345777|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1326|NULL|-1.3663800|-0.2559466	chr7	 29688154	 29689265	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16630_PI429285431	1.8746485	A	1.2695843	A	1.52104643837603	0	lncRNA	18332-1_{1..239}	lnc-C1orf138-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf138-2:1	chr1	150508299	150508537	-	lnc-C1orf138-2	lnc-C1orf138-2:1	XLOC_001020	linc-APH1A-5	NA	NA	NA	inter
CUST_8272_PI429285431	0.9270944	A	0.92461354	A	1.00172108047621	0	lncRNA	9856-2_{3001..3473}	lnc-GGT5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GGT5-1:1	chr22	 24538128	 24538600	-	lnc-GGT5-1	lnc-GGT5-1:1	ENSG00000225686	ENST00000452954	CABIN1	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CABIN1:range=chr22:24431966-245741645'pad=0,hg19_refFlat_CABIN1:range=chr22:24431966-245741645'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20chr22:24525128-24545705"	NA	inner
CUST_51114_PI429285431	0.9240247	A	0.91902155	A	1.00347393950578	0	lncRNA	54751-1_{1..1281}	hg19_lincRNAsTranscripts_TCONS_l2_00006990 range=chr13:106359046-106384044 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006990 range=chr13:106359046-106384044 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	106359046	106360326	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44581_PI429285431	5.4409766	P	3.4800892	P	3.89301364139645	0	lncRNA	49162-1_{1..1809}	"gi|298919190|ref|NR_033798.1| Homo sapiens calpastatin (CAST), transcript variant 12, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298919190|ref|NR_033798.1| Homo sapiens calpastatin (CAST), transcript variant 12, non-coding RNA"	Chr5	 96079244	 96081052	+	831	NR_033798.1	NA	NA	NA	NA	NA	inter
CUST_44903_PI429285431	0.9177749	A	1.1423689	A	0.855835839197192	0	lncRNA	49422-1_{1..1691}	"gi|302318958|ref|NR_036482.1| Homo sapiens dpy-19-like 2 pseudogene 3 (C. elegans) (DPY19L2P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302318958|ref|NR_036482.1| Homo sapiens dpy-19-like 2 pseudogene 3 (C. elegans) (DPY19L2P3), non-coding RNA"	Chr7	 29724770	 29726460	+	442524	NR_036482.1	NA	NA	NA	NA	NA	inter
CUST_45293_PI429285431	5.842803	P	4.5129867	P	2.51370665553845	0	lncRNA	49739-1_{1..928}	"gi|168823567|ref|NR_015375.1| Homo sapiens uncharacterized LOC401491 (FLJ35024), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|168823567|ref|NR_015375.1| Homo sapiens uncharacterized LOC401491 (FLJ35024), non-coding RNA"	NA	NA	NA	NA	NA	NR_015375.1	NA	NA	NA	"hg19_refFlat_VLDLR:range=chr9:2622190-26538685'pad=0,hg19_refFlat_VLDLR:range=chr9:2622190-26538685'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.70"	NA	Unknown
CUST_48643_PI429285431	10.552602	P	10.40061	P	1.11110256737712	0	lncRNA	52490-1_{1..630}	hg19_lincRNAsTranscripts_TCONS_l2_00014685 range=chr2:91805841-91843683 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014685 range=chr2:91805841-91843683 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 91805841	 91806470	-	NA	NA	NA	NA	LOC100506191	NA	chr2:91832852-91835376	inter
CUST_50786_PI429285431	1.7500374	A	2.366963	A	0.652058993542484	0	lncRNA	54442-1_{1..1652}	hg19_lincRNAsTranscripts_TCONS_00061605_H19 range=chr11:2016406-2019057 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00061605_H19 range=chr11:2016406-2019057 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	  2016406	  2018057	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39735_PI429285431	0.9079109	A	1.9662263	A	0.480192441491466	0	lncRNA	40661-2_{3001..6000}	n405705|NR_002940_3|lncRNA|Homosapiens||RefGeneNoncode|NR_002940_3||8.1029800|-0.2473154	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405705|NR_002940_3|lncRNA|Homosapiens||RefGeneNoncode|NR_002940_3||8.1029800|-0.2473154	chr17	 43586248	 43589247	-	NA	NA	NA	NA	NA	"hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.01;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30"	NA	inter
CUST_47069_PI429285431	0.92437613	A	0.92404336	A	1.00023068519101	0	lncRNA	51155-1_{1..1725}	"gi|210147564|ref|NR_024335.1| Homo sapiens uncharacterized LOC148231 (FLJ25328), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ncbi,"	">gi|210147564|ref|NR_024335.1| Homo sapiens uncharacterized LOC148231 (FLJ25328), transcript variant 1, non-coding RNA"	Chr19	 16144523	 16146247	+	148231	NR_024335.1	NA	NA	NA	NA	NA	inter
CUST_39874_PI429285431	5.636049	P	5.0340867	P	1.51777959037276	0	lncRNA	40768-2_{3001..6000}	n406541|NR_024052_4|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_4||1.1295700|-0.2281621	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406541|NR_024052_4|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_4||1.1295700|-0.2281621	chr6	  1588164	  1591163	-	NA	NA	NA	NA	GMDS	"hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.24;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_FOXC1:range=chr6:1610681-16123425'pad=0,hg19_refFlat_FOXC1:range=chr6:1610681-16123425'pad=0 3'pad=0 strand=+ repeatMasking=none,-112.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20chr6:1624041-1634902"	NA	inner
CUST_22975_PI429285431	5.5600586	P	6.192425	P	0.645117384520058	0	lncRNA	24549-1_{1..428}	lnc-GIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GIP-1:1	chr17	 47074818	 47075245	-	lnc-GIP-1	lnc-GIP-1:1	ENSG00000250838.1	RP11-501C14.5	IGF2BP1	NA	chr17:47074774-47084854	inner
CUST_6171_PI429285431	2.2388818	A	2.8757963	A	0.643086852539197	0	lncRNA	6095-1_{1..467}	"transcript_id ""ENST00000586447.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586447.1"" | genecode_v17"	chr18	 39805929	 39806395	+	ENSG00000267586.2	ENST00000586447.1	RP11-21F16.1	RP11-21F16.1-009	NA	NA	NA	inter
CUST_20130_PI429285431	5.516616	P	5.794957	P	0.82453863499492	0	lncRNA	21777-1_{1..293}	lnc-LRRC32-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC32-6:4	chr11	 76494029	 76494321	-	lnc-LRRC32-6	lnc-LRRC32-6:4	ENSG00000255100.1	RP11-21L23.3	TSKU	NA	chr11:76494285-76504104	inner
CUST_24505_PI429285431	0.9207823	A	0.9100972	A	1.00743384176331	0	lncRNA	26056-1_{1..440}	lnc-MOCS1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MOCS1-1:2	chr6	 39864973	 39865412	-	lnc-MOCS1-1	lnc-MOCS1-1:2	ENSG00000235033.2	RP11-61I13.3	DAAM2	"hg19_refFlat_DAAM2:range=chr6:39824079-398698135'pad=0,hg19_refFlat_DAAM2:range=chr6:39824079-398698135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70chr6:39854973-39872653"	NA	inner
CUST_48336_PI429285431	2.6426556	A	2.8482373	A	0.86718896284037	0	lncRNA	52191-1_{1..424}	hg19_lincRNAsTranscripts_TCONS_l2_00001221 range=chr1:48243960-48260424 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001221 range=chr1:48243960-48260424 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 48243960	 48244383	-	NA	NA	NA	NA	LOC388630	NA	chr1:48233960-48270424	inner
CUST_17940_PI429285431	0.915679	A	1.0112547	A	0.935898707367524	0	lncRNA	19672-1_{1..2364}	lnc-PCM1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCM1-4:3	chr8	 17677867	 17680230	+	lnc-PCM1-4	lnc-PCM1-4:3	XLOC_006726	linc-PCM1	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10"	NA	inter
CUST_26859_PI429285431	3.2680964	P	3.6537054	P	0.765455811054765	0	lncRNA	28373-1_{1..538}	n323931|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055377|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055377|-0.5660660|-0.0722726	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323931|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055377|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055377|-0.5660660|-0.0722726	chr9	140210203	140210740	-	NA	NA	NA	NA	EXD3	NA	chr9:140201348-140223596	inner
CUST_42779_PI429285431	9.748308	P	10.085013	P	0.791847765096773	0	lncRNA	45764-1_{1..134}	ENST00000391081 ncrna:snoRNA chromosome:GRCh37:12:57255159:57255292:1 gene:ENSG00000212383 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391081 ncrna:snoRNA chromosome:GRCh37:12:57255159:57255292:1 gene:ENSG00000212383 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 57255159	 57255292	+	ENSG00000212383	ENST00000391081	NA	NA	NA	NA	NA	inter
CUST_35798_PI429285431	2.3581047	A	1.1824985	A	2.25887775863606	0	lncRNA	37208-1_{1..3000}	n344478|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_26|NULL|-1.2862300|-0.2792485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344478|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_26|NULL|-1.2862300|-0.2792485	chr14	101292452	101295451	+	NA	NA	NA	NA	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10"	NA	inter
CUST_22342_PI429285431	0.90296674	A	0.8987868	A	1.00290151489552	0	lncRNA	23936-1_{1..2340}	lnc-AC006156.2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC006156.2-2:3	chrY	  9233622	  9235961	-	lnc-AC006156.2-2	lnc-AC006156.2-2:3	ENSG00000237802.2	FAM197Y6	FAM197Y6	NA	chrY:9223622-9233681	inner
CUST_3091_PI429285431	0.9062258	A	0.9079304	A	0.998819159058018	0	lncRNA	3070-1_{1..1770}	"transcript_id ""ENST00000563810.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563810.1"" | genecode_v17"	chr8	 41685683	 41687452	-	ENSG00000260588.1	ENST00000563810.1	RP11-930P14.2	RP11-930P14.2-001	ANK1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30chr8:41675683-41697452"	NA	inner
CUST_4962_PI429285431	1.9810424	A	0.9141257	A	2.09495128997942	0	lncRNA	4906-1_{1..1714}	"transcript_id ""ENST00000555032.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555032.1"" | genecode_v17"	chr14	 96087251	 96088964	+	ENSG00000258927.1	ENST00000555032.1	RP11-1070N10.5	RP11-1070N10.5-001	NA	NA	NA	inter
CUST_44534_PI429285431	0.9074821	A	0.92069286	A	0.990884796609344	0	lncRNA	49128-2_{3001..6000}	"gi|374429566|ref|NR_046243.1| Homo sapiens uncharacterized LOC642366 (LOC642366), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|374429566|ref|NR_046243.1| Homo sapiens uncharacterized LOC642366 (LOC642366), non-coding RNA"	Chr5	 50671570	 50674569	-	642366	NR_046243.1	NA	NA	NA	NA	NA	inter
CUST_14070_PI429285431	0.90568787	A	0.90213853	A	1.00246324382614	0	lncRNA	15716-1_{1..1063}	lnc-GPR26-4:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-GPR26-4:9	chr10	125312053	125313115	+	lnc-GPR26-4	lnc-GPR26-4:9	XLOC_008652	linc-GPR26-3	NA	NA	NA	inter
LNCA_21_P0005431	0.92095745	A	0.92092884	A	1.00001983113747	0	lncRNA	TCONS_00013597	NA	NA	NA	NA	XLOC_006252	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006252), lincRNA [TCONS_00013597]"	chr7:130624431-130624490	hs|7q32.3	Agilent_HUMAN_G3V2	TCONS_00013597	TCONS_00013597	chr7	130624431	130624490	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009090	0.96778446	A	0.9216038	A	1.03252782462099	0	lncRNA	TCONS_00024780	NA	NA	NA	NA	XLOC_012056	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012056), lincRNA [TCONS_00024780]"	chr16:88143708-88143649	hs|16q24.2	Agilent_HUMAN_G3V2	TCONS_00024780	TCONS_00024780	chr16	 88143649	 88143708	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32866_PI429285431	1.9338967	A	1.9786482	A	0.96945678865003	0	lncRNA	34495-1_{1..334}	n339527|AF086547|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1968|NULL|-1.1877900|-0.2123106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339527|AF086547|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1968|NULL|-1.1877900|-0.2123106	chr21	 43724172	 43724505	+	NA	NA	NA	NA	ABCG1	NA	chr21:43714172-43717354	inter
CUST_17095_PI429285431	1.1650976	A	1.0075005	A	1.11542777442608	0	lncRNA	18803-1_{1..428}	lnc-MAK16-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-MAK16-1:3	chr8	 33653812	 33654239	+	lnc-MAK16-1	lnc-MAK16-1:3	XLOC_006768	linc-UNC5D-4	NA	NA	NA	inter
CUST_35133_PI429285431	0.9089629	A	1.0374774	A	0.91477287978147	0	lncRNA	36535-1_{1..1856}	n342101|AK123151|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4583|NULL|-1.2801900|-0.3872472	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342101|AK123151|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4583|NULL|-1.2801900|-0.3872472	chr6	108940212	108942067	+	NA	NA	NA	NA	FOXO3	NA	chr6:108930212-108951819	inner
CUST_30399_PI429285431	0.9165629	A	0.9073046	A	1.00643799994363	0	lncRNA	32179-1_{1..595}	n335520|BC066266|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000262161|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000262161|3.2913200|-0.2126400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335520|BC066266|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000262161|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000262161|3.2913200|-0.2126400	chr12	 68642569	 68643163	-	NA	NA	NA	NA	IL22	NA	chr12:68642025-68647281	inner
CUST_33599_PI429285431	1.5551311	A	0.9136971	A	1.55987886657522	0	lncRNA	35164-1_{1..414}	n340355|AF009282|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2816|NULL|-1.2109400|-0.4569101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340355|AF009282|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2816|NULL|-1.2109400|-0.4569101	chr5	  9294796	  9295209	-	NA	NA	NA	NA	SEMA5A	NA	chr5:9284796-9305210	inner
CUST_45104_PI429285431	0.9286325	A	1.3371662	A	0.753388700143625	0	lncRNA	49586-1_{1..3000}	"gi|406035361|ref|NR_073169.1| Homo sapiens autophagy related 9B (ATG9B), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|406035361|ref|NR_073169.1| Homo sapiens autophagy related 9B (ATG9B), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_073169.1	NA	NA	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507112575'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507112575'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.60"	NA	Unknown
CUST_36643_PI429285431	8.186324	P	6.476084	P	3.27215252894866	0	lncRNA	37833-1_{1..2168}	n345137|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_686|NULL|-1.5116100|-0.2783725	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345137|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_686|NULL|-1.5116100|-0.2783725	chr11	 12552895	 12555062	+	NA	NA	NA	NA	PARVA	NA	chr11:12542895-12556903	inner
LNCA_21_P0011961	0.9331421	A	0.9253014	A	1.00544955419229	0	lncRNA	TCONS_l2_00014855	NA	NA	NA	NA	XLOC_l2_008226	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008226), lincRNA [TCONS_l2_00014855]"	chr2:118954931-118954872	hs|2q14.2	Agilent_HUMAN_G3V2	TCONS_l2_00014855	TCONS_l2_00014855	chr2	118954872	118954931	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49235_PI429285431	4.144461	P	4.3465014	P	0.869320216048155	0	lncRNA	53055-1_{1..518}	hg19_lincRNAsTranscripts_TCONS_l2_00021496 range=chr4:190816735-190838700 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021496 range=chr4:190816735-190838700 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	190816735	190817252	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50406_PI429285431	4.3401184	P	3.7768514	P	1.47761150027879	0	lncRNA	54110-1_{1..809}	hg19_lincRNAsTranscripts_TCONS_l2_00030125 range=chrX:2529039-2576883 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030125 range=chrX:2529039-2576883 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	  2529039	  2529847	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9475_PI429285431	1.184358	A	0.91932607	A	1.20166264465788	0	lncRNA	10981-1_{1..579}	lnc-C9orf91-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf91-1:2	chr9	117421271	117421849	+	lnc-C9orf91-1	lnc-C9orf91-1:2	XLOC_007528	linc-DEC1	LOC100505478	NA	chr9:117428714-117431636	inter
CUST_42502_PI429285431	2.6757228	A	1.577603	A	2.14075515570906	0	lncRNA	45276-1_{1..94}	ENST00000408139 ncrna:snoRNA chromosome:GRCh37:16:70571908:70572001:1 gene:ENSG00000221066 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408139 ncrna:snoRNA chromosome:GRCh37:16:70571908:70572001:1 gene:ENSG00000221066 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 70571908	 70572001	+	ENSG00000221066	ENST00000408139	NA	NA	SF3B3	NA	chr16:70561908-70582001	inner
LNCA_21_P0007629	0.94293493	A	1.6221894	A	0.624487902711135	0	lncRNA	TCONS_00020569	NA	NA	NA	NA	XLOC_009888	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009888), lincRNA [TCONS_00020569]"	chr12:114532930-114532989	hs|12q24.21	Agilent_HUMAN_G3V2	TCONS_00020569	TCONS_00020569	chr12	114532930	114532989	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40345_PI429285431	4.0357904	P	3.8381171	P	1.14684728989217	0	lncRNA	41149-1_{1..3000}	n409064|NR_033124|lncRNA|Homosapiens||RefGeneNoncode|NR_033124||9.3581200|-0.1442070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409064|NR_033124|lncRNA|Homosapiens||RefGeneNoncode|NR_033124||9.3581200|-0.1442070	chrX	110924345	110927344	+	NA	NA	NA	NA	ALG13	NA	chrX:110924346-111003877	inner
CUST_48007_PI429285431	0.9338534	A	0.9232163	A	1.00740032392441	0	lncRNA	51891-2_{3001..4386}	"gi|410173273|ref|XR_172185.1| PREDICTED: Homo sapiens uncharacterized LOC642533 (LOC642533), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173273|ref|XR_172185.1| PREDICTED: Homo sapiens uncharacterized LOC642533 (LOC642533), misc_RNA"	NA	NA	NA	NA	NA	XR_172185.1	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00"	NA	Unknown
LNCA_21_P0006268	0.9422947	A	0.9224698	A	1.01383642292352	0	lncRNA	TCONS_00016322	NA	NA	NA	NA	XLOC_007696	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007696), lincRNA [TCONS_00016322]"	chr9:44136730-44136671	hs|9p11.2	Agilent_HUMAN_G3V2	TCONS_00016322	TCONS_00016322	chr9	 44136671	 44136730	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38293_PI429285431	8.949056	P	9.096674	P	0.90273972525107	0	lncRNA	39346-1_{1..441}	n381945|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ugx.1||1.9202400|-0.3066105	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381945|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ugx.1||1.9202400|-0.3066105	chr12	125420000	125420440	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20996_PI429285431	1.9174628	A	1.2331035	A	1.60698816051868	0	lncRNA	22625-1_{1..573}	lnc-RTN3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RTN3-2:1	chr11	 63388676	 63389248	+	lnc-RTN3-2	lnc-RTN3-2:1	ENSG00000203520.3	RP11-697H9.3	ATL3	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-28.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-29.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60chr11:63396437-63399143"	NA	inter
CUST_31288_PI429285431	1.1195753	A	1.8488892	A	0.603190704011792	0	lncRNA	33076-1_{1..1853}	n337749|AK057018|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|131|NULL|-1.0605000|-0.1657234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337749|AK057018|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|131|NULL|-1.0605000|-0.1657234	chr1	 22691122	 22692974	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8080_PI429285431	3.66684	P	3.7147632	P	0.967327822685805	0	lncRNA	9686-1_{1..1212}	lnc-MDS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MDS2-1:1	chr1	 23853897	 23855108	+	lnc-MDS2-1	lnc-MDS2-1:1	ENSG00000247196	ENST00000501865	E2F2	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_E2F2:range=chr1:23836372-238572855'pad=0,hg19_refFlat_E2F2:range=chr1:23836372-238572855'pad=0 3'pad=0 strand=- repeatMasking=none,-95.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10chr1:23843897-23857712"	NA	inner
CUST_29971_PI429285431	10.396648	P	9.943958	P	1.36858970492509	0	lncRNA	31737-1_{1..213}	n334214|S59749|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000215889|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000215889|0.1708410|-0.3138991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334214|S59749|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000215889|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000215889|0.1708410|-0.3138991	chr11	119290970	119291182	-	NA	NA	NA	NA	THY1	NA	chr11:119288655-119294246	inter
CUST_18225_PI429285431	0.9286719	A	1.1039	A	0.885627484241226	0	lncRNA	19960-1_{1..600}	lnc-FAM70A-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM70A-1:6	chrX	119378619	119379218	-	lnc-FAM70A-1	lnc-FAM70A-1:6	ENSG00000233382	NKAPP1	ZBTB33	NA	chrX:119384607-119388916	inter
CUST_42264_PI429285431	7.9364142	P	8.149136	P	0.86290772605654	0	lncRNA	44739-1_{1..150}	ENST00000365096 ncrna:rRNA chromosome:GRCh37:19:24187160:24187309:-1 gene:ENSG00000201966 gene_biotype:rRNA transcript_biotype:rRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365096 ncrna:rRNA chromosome:GRCh37:19:24187160:24187309:-1 gene:ENSG00000201966 gene_biotype:rRNA transcript_biotype:rRNA	chr19	 24187160	 24187309	-	ENSG00000201966	ENST00000365096	NA	NA	NA	NA	NA	inter
CUST_28161_PI429285431	2.2940302	A	2.0706956	A	1.16742882874319	0	lncRNA	29788-1_{1..499}	n325440|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324044|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324044|-1.3288700|-0.3993158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325440|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324044|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324044|-1.3288700|-0.3993158	chr2	 11451557	 11452055	+	NA	NA	NA	NA	ROCK2	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.20;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50chr2:11441557-11469823"	NA	inner
CUST_37587_PI429285431	0.9179631	A	1.0493522	A	0.912951990395754	0	lncRNA	38688-1_{1..712}	n346064|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1614|NULL|-1.2821400|-0.3268563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346064|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1614|NULL|-1.2821400|-0.3268563	chr9	 88420916	 88421627	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6093_PI429285431	3.0960534	P	2.7941895	P	1.2327360269513	0	lncRNA	6019-1_{1..466}	"transcript_id ""ENST00000593121.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593121.1"" | genecode_v17"	chr18	 13183401	 13183866	-	ENSG00000267286.1	ENST00000593121.1	RP11-794M8.2	RP11-794M8.2-001	NA	NA	NA	inter
CUST_10901_PI429285431	7.1459775	P	7.5225363	P	0.770272700349391	0	lncRNA	12443-1_{1..2218}	lnc-BHLHE23-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-BHLHE23-1:1	chr20	 61669082	 61671299	-	lnc-BHLHE23-1	lnc-BHLHE23-1:1	XLOC_013840	linc-BHLHE23-2	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_6665_PI429285431	0.90061414	A	0.9043124	A	0.997439844310787	0	lncRNA	6611-1_{1..2320}	"transcript_id ""ENST00000441568.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441568.1"" | genecode_v17"	chr20	 22656710	 22659029	-	ENSG00000230400.1	ENST00000441568.1	RP11-359G22.2	RP11-359G22.2-001	NA	NA	NA	inter
CUST_8003_PI429285431	6.3942356	P	5.682329	P	1.63796735036811	0	lncRNA	9614-1_{1..566}	lnc-VAPB-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-VAPB-1:4	chr20	 57098770	 57099335	+	lnc-VAPB-1	lnc-VAPB-1:4	ENSG00000231290	RP5-907D15.2	APCDD1L	NA	chr20:57088770-57089949	inter
CUST_9282_PI429285431	3.2946453	A	4.020658	P	0.604572515860024	0	lncRNA	10788-1_{1..1999}	lnc-SIK1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIK1-5:3	chr21	 44781863	 44783861	-	lnc-SIK1-5	lnc-SIK1-5:3	XLOC_014102	linc-U2AF1-2	NA	NA	NA	inter
LNCA_21_P0013016	5.884492	P	5.965127	P	0.94564133253639	0	lncRNA	THC2704841	NA	NA	NA	NA	XLOC_l2_012415	NA	NA	THC2704841	NA	"BROAD Institute lincRNA (XLOC_l2_012415), lincRNA [TCONS_l2_00024057]"	chr6:016163864-016163923	hs|6p22.3	Agilent_HUMAN_G3V2	THC2704841	THC2704841	chr6	 16163864	 16163923	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26447_PI429285431	6.9817567	P	7.561035	P	0.669298506439295	0	lncRNA	27955-1_{1..531}	lnc-KIDINS220-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIDINS220-2:3	chr2	  8818871	  8819401	-	lnc-KIDINS220-2	lnc-KIDINS220-2:3	ENSG00000235092.1	AC011747.7	ID2	NA	chr2:8822113-8824583	inter
CUST_14287_PI429285431	1.0426307	A	1.1264158	A	0.943578793404545	0	lncRNA	15947-1_{1..207}	lnc-NTSR2-5:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTSR2-5:6	chr2	 13143949	 13144155	-	lnc-NTSR2-5	lnc-NTSR2-5:6	XLOC_001992	linc-NTSR2-2	NA	NA	NA	inter
CUST_24827_PI429285431	1.1247787	A	1.2181913	A	0.937302996469398	0	lncRNA	26367-1_{1..385}	lnc-EMID1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EMID1-1:1	chr22	 29657833	 29658217	+	lnc-EMID1-1	lnc-EMID1-1:1	ENSG00000237015.1	CTA-984G1.5	EMID1	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80chr22:29647833-29655586"	NA	inner
CUST_46940_PI429285431	0.92084116	A	0.90631163	A	1.01012198698636	0	lncRNA	51048-2_{3001..3189}	"gi|338827664|ref|NR_040071.1| Homo sapiens uncharacterized LOC100131096 (LOC100131096), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338827664|ref|NR_040071.1| Homo sapiens uncharacterized LOC100131096 (LOC100131096), non-coding RNA"	Chr17	 76106482	 76106670	-	100131096	NR_040071.1	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70"	NA	inter
CUST_51273_PI429285431	4.7489905	P	5.2946095	P	0.6850973928318	0	lncRNA	54879-1_{1..701}	hg19_lincRNAsTranscripts_TCONS_l2_00008514 range=chr15:29967224-29973149 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008514 range=chr15:29967224-29973149 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 29967224	 29967924	+	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.40"	NA	inter
CUST_31659_PI429285431	5.0072517	P	2.2412386	A	6.80225504626032	0	lncRNA	33410-1_{1..3000}	n338183|AL050064|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|574|NULL|-0.8431260|-0.4757503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338183|AL050064|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|574|NULL|-0.8431260|-0.4757503	chr1	114304453	114307452	-	NA	NA	NA	NA	PHTF1	NA	chr1:114294453-114301777	inner
CUST_28914_PI429285431	0.9025926	A	0.8938332	A	1.0060900226539	0	lncRNA	30631-1_{1..568}	n326339|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000083698|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000083698|-1.3898000|-0.4054901	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326339|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000083698|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000083698|-1.3898000|-0.4054901	chr1	167339985	167340552	+	NA	NA	NA	NA	POU2F1	NA	chr1:167329985-167350769	inner
CUST_30953_PI429285431	1.1207696	A	1.142664	A	0.984938534155168	0	lncRNA	32741-1_{1..277}	n337071|DQ187489|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342138|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342138|2.2082000|-0.2377448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337071|DQ187489|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342138|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342138|2.2082000|-0.2377448	chr2	 90198906	 90199182	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21705_PI429285431	3.9971285	P	3.9133646	P	1.05977933414514	0	lncRNA	23316-1_{1..769}	lnc-DCBLD2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-DCBLD2-1:2	chr3	 98451270	 98452038	-	lnc-DCBLD2-1	lnc-DCBLD2-1:2	ENSG00000239445.1	ST3GAL6-AS1	ST3GAL6	NA	chr3:98451572-98461492	inter
CUST_7710_PI429285431	1.1308815	A	1.3887118	A	0.836344770918786	0	lncRNA	9343-1_{1..2838}	lnc-ATG7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATG7-1:1	chr3	 11624130	 11626967	+	lnc-ATG7-1	lnc-ATG7-1:1	ENSG00000248829	ENST00000513786	VGLL4	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-9.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40chr3:11614130-11635091"	NA	inner
CUST_25226_PI429285431	0.9157215	A	0.89724326	A	1.01289051549909	0	lncRNA	26757-1_{1..714}	lnc-FAM110B-8:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM110B-8:6	chr8	 58152654	 58153367	+	lnc-FAM110B-8	lnc-FAM110B-8:6	ENSG00000253301.1	RP11-513O17.2	NA	NA	NA	inter
CUST_41210_PI429285431	0.8984009	A	1.7841271	A	0.541215026305898	0	lncRNA	42095-1_{1..73}	ENST00000584380 ncrna:miRNA chromosome:GRCh37:11:1880694:1880766:-1 gene:ENSG00000264493 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584380 ncrna:miRNA chromosome:GRCh37:11:1880694:1880766:-1 gene:ENSG00000264493 gene_biotype:miRNA transcript_biotype:miRNA	chr11	  1880694	  1880766	-	ENSG00000264493	ENST00000584380	NA	NA	LSP1	NA	chr11:1874200-1890766	inner
LNCA_21_P0003129	1.5358264	A	2.2405849	A	0.613545184454488	0	lncRNA	TCONS_00006534	NA	NA	NA	NA	XLOC_003157	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003157), lincRNA [TCONS_00006534]"	chr3:71835015-71834956	hs|3p13	Agilent_HUMAN_G3V2	TCONS_00006534	TCONS_00006534	chr3	 71834956	 71835015	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24894_PI429285431	0.9128208	A	0.90642655	A	1.00444199289127	0	lncRNA	26435-1_{1..637}	lnc-CHMP7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHMP7-2:1	chr8	 23047725	 23048361	+	lnc-CHMP7-2	lnc-CHMP7-2:1	ENSG00000253930.1	RP11-1149O23.2	TNFRSF10A	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-27.00chr8:23048970-23058188"	NA	inter
CUST_18282_PI429285431	0.9032614	A	0.90329856	A	0.999974242982488	0	lncRNA	20013-1_{1..2398}	lnc-RAB6C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RAB6C-1:1	chr2	130702225	130704622	+	lnc-RAB6C-1	lnc-RAB6C-1:1	ENSG00000237574	AC079776.3	NA	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20"	NA	inter
CUST_52176_PI429285431	2.4782987	A	2.5806985	A	0.93148226094428	0	lncRNA	55697-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017651 range=chr22:24647047-24658668 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017651 range=chr22:24647047-24658668 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 24647047	 24650046	+	NA	NA	NA	NA	SPECC1L	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0,hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80chr22:24653368-24668668"	NA	inter
CUST_28551_PI429285431	1.0419271	A	0.9164363	A	1.09087878283911	0	lncRNA	30225-1_{1..421}	n325902|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049929|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049929|-1.0146600|-0.0620449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325902|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049929|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049929|-1.0146600|-0.0620449	chr10	102987749	102988169	+	NA	NA	NA	NA	LBX1	"hg19_refFlat_LBX1:range=chr10:102987027-1029885725'pad=0,hg19_refFlat_LBX1:range=chr10:102987027-1029885725'pad=0 3'pad=0 strand=- repeatMasking=none,-108.20chr10:102986733-102988717"	NA	inner
CUST_41587_PI429285431	0.916332	A	0.90069306	A	1.01089905378801	0	lncRNA	42915-1_{1..85}	ENST00000384897 ncrna:miRNA chromosome:GRCh37:19:54209506:54209590:1 gene:ENSG00000207629 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384897 ncrna:miRNA chromosome:GRCh37:19:54209506:54209590:1 gene:ENSG00000207629 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54209506	 54209590	+	ENSG00000207629	ENST00000384897	NA	NA	NA	NA	NA	inter
CUST_27374_PI429285431	6.7335777	P	6.170453	P	1.47746576348675	0	lncRNA	28936-2_{3001..4785}	n324535|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040220|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040220|-1.0494200|-0.3199008	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324535|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040220|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040220|-1.0494200|-0.3199008	chr6	 34358459	 34360243	+	NA	NA	NA	NA	NUDT3	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_NUDT3:range=chr6:34256530-343601395'pad=0,hg19_refFlat_NUDT3:range=chr6:34256530-343601395'pad=0 3'pad=0 strand=- repeatMasking=none,-94.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90chr6:34345459-34360457"	NA	inner
CUST_23276_PI429285431	0.9153853	A	0.9157045	A	0.999778771894512	0	lncRNA	24847-1_{1..1363}	lnc-SYT17-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SYT17-2:1	chr16	 19326486	 19327848	+	lnc-SYT17-2	lnc-SYT17-2:1	ENSG00000259871.1	CTA-363E6.1	NA	NA	NA	inter
CUST_30832_PI429285431	0.900873	A	0.89002705	A	1.00754616956832	0	lncRNA	32620-1_{1..335}	n336785|Z96969|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328306|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328306|2.5119200|-0.1051892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336785|Z96969|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328306|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328306|2.5119200|-0.1051892	chr14	106573191	106573525	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19924_PI429285431	9.999949	P	10.124863	P	0.917058708047931	0	lncRNA	21579-1_{1..1023}	lnc-PDGFRB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDGFRB-1:1	chr5	149534960	149535982	-	lnc-PDGFRB-1	lnc-PDGFRB-1:1	ENSG00000253830.1	AC005895.3	PDGFRB	NA	chr5:149524960-149535422	inner
CUST_15191_PI429285431	0.89512897	A	0.90812606	A	0.991031562230497	0	lncRNA	16859-1_{1..241}	lnc-KHDRBS3-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KHDRBS3-10:1	chr8	138728972	138729212	+	lnc-KHDRBS3-10	lnc-KHDRBS3-10:1	XLOC_006939	linc-CHRAC1-2	NA	NA	NA	inter
CUST_13692_PI429285431	0.9177915	A	0.91435516	A	1.00238472833454	0	lncRNA	15332-1_{1..798}	lnc-NDUFV2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDUFV2-1:5	chr18	  8991415	  8992212	+	lnc-NDUFV2-1	lnc-NDUFV2-1:5	XLOC_012622	linc-NDUFV2	NA	NA	NA	inter
CUST_27052_PI429285431	4.2675953	P	3.9690611	P	1.22989418721668	0	lncRNA	28586-1_{1..728}	n324163|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051552|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051552|-1.0196900|-0.3762050	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324163|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051552|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051552|-1.0196900|-0.3762050	chr9	  3637334	  3638061	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35863_PI429285431	0.91461724	A	0.91352177	A	1.00075961029977	0	lncRNA	37257-2_{3001..5889}	n344529|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_77|NULL|-1.2915300|-0.3016574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344529|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_77|NULL|-1.2915300|-0.3016574	chr2	216479098	216481986	+	NA	NA	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_NDUFA4:range=chr7:10973263-109796845'pad=0,hg19_refFlat_NDUFA4:range=chr7:10973263-109796845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
LNCA_21_P0009306	1.9845043	A	3.0864565	P	0.465885650322809	0	lncRNA	TCONS_00025592	NA	NA	NA	NA	XLOC_012421	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012421), lincRNA [TCONS_00025592]"	chr17:21405218-21405159	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_00025592	TCONS_00025592	chr17	 21405159	 21405218	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35923_PI429285431	0.91458416	A	0.95072854	A	0.975257856163171	0	lncRNA	37290-1_{1..2205}	n344565|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_113|NULL|-1.6649700|-0.3526049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344565|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_113|NULL|-1.6649700|-0.3526049	chr1	247353144	247355348	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF695:range=chr1:247150269-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247150269-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50"	NA	inter
CUST_49858_PI429285431	9.135885	P	8.558966	P	1.49166027519113	0	lncRNA	53610-1_{1..1437}	hg19_lincRNAsTranscripts_TCONS_l2_00025999 range=chr7:72299944-72307976 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025999 range=chr7:72299944-72307976 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 72299944	 72301380	+	NA	NA	NA	NA	TYW1B	NA	chr7:72289944-72298813	inter
CUST_42969_PI429285431	0.9096287	A	0.90550447	A	1.00286278837115	0	lncRNA	46113-1_{1..71}	ENST00000363242 ncrna:snoRNA chromosome:GRCh37:12:116290453:116290523:-1 gene:ENSG00000200112 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363242 ncrna:snoRNA chromosome:GRCh37:12:116290453:116290523:-1 gene:ENSG00000200112 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	116290453	116290523	-	ENSG00000200112	ENST00000363242	NA	NA	NA	NA	NA	inter
CUST_39793_PI429285431	12.702163	P	11.610255	P	2.13155753935667	0	lncRNA	40703-1_{1..1310}	n406145|NR_003573|lncRNA|Homosapiens||RefGeneNoncode|NR_003573||4.4656700|-0.3207543	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406145|NR_003573|lncRNA|Homosapiens||RefGeneNoncode|NR_003573||4.4656700|-0.3207543	chr9	 33624222	 33625531	+	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-26.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_25223_PI429285431	0.9136578	A	0.9116707	A	1.00137830174845	0	lncRNA	26754-1_{1..1404}	lnc-NEBL-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NEBL-2:3	chr10	 20017334	 20018737	-	lnc-NEBL-2	lnc-NEBL-2:3	ENSG00000233968.1	RP11-354E11.2	C10orf112	NA	chr10:20007334-20023407	inter
CUST_11675_PI429285431	5.063733	P	5.825163	P	0.589911320454409	0	lncRNA	13253-1_{1..2551}	lnc-FOXO1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-FOXO1-2:3	chr13	 40794574	 40797124	-	lnc-FOXO1-2	lnc-FOXO1-2:3	XLOC_010577	linc-LHFP	NA	NA	NA	inter
LNCA_21_P0014855	1.7865696	A	2.6417043	A	0.552813709734217	0	lncRNA	XR_132739	XR_132739	XR_132739	NA	NA	LOC100652895	uncharacterized LOC100652895	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652895 (LOC100652895), miscRNA [XR_132739]"	chr18:61078708-61078767	hs|18q21.33	Agilent_HUMAN_G3V2	XR_132739	XR_132739	chr18	 61078708	 61078767	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29912_PI429285431	2.3455052	A	1.9580051	A	1.30812472210662	0	lncRNA	31676-1_{1..374}	n334033|M25786|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195012|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195012|1.8137700|-0.1600762	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334033|M25786|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195012|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195012|1.8137700|-0.1600762	chr5	149465929	149466302	-	NA	NA	NA	NA	CSF1R	NA	chr5:149455929-149476303	inner
CUST_4800_PI429285431	1.8397453	A	1.9506135	A	0.926030617855552	0	lncRNA	4744-1_{1..866}	"transcript_id ""ENST00000556886.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556886.1"" | genecode_v17"	chr14	 46533362	 46534227	+	ENSG00000258700.1	ENST00000556886.1	LINC00871	LINC00871-002	NA	NA	NA	inter
CUST_9420_PI429285431	5.1375446	P	5.389371	P	0.839832544208695	0	lncRNA	10924-1_{1..1129}	lnc-BCL2L11-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BCL2L11-2:2	chr2	112043757	112044885	+	lnc-BCL2L11-2	lnc-BCL2L11-2:2	XLOC_001624	linc-MERTK-3	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40"	NA	inter
CUST_46210_PI429285431	4.7529097	P	4.706348	P	1.03280056858422	0	lncRNA	50452-1_{1..1894}	"gi|397139487|ref|XR_159007.1| PREDICTED: Homo sapiens small integral membrane protein 2 (SMIM2), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|397139487|ref|XR_159007.1| PREDICTED: Homo sapiens small integral membrane protein 2 (SMIM2), misc_RNA"	NA	NA	NA	NA	NA	XR_159007.1	NA	NA	NA	NA	NA	Unknown
CUST_45086_PI429285431	5.41288	P	6.0840173	P	0.628011420441045	0	lncRNA	49570-1_{1..2111}	"gi|261278373|ref|NR_029394.1| Homo sapiens thromboxane A synthase 1 (platelet) (TBXAS1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|261278373|ref|NR_029394.1| Homo sapiens thromboxane A synthase 1 (platelet) (TBXAS1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NR_029394.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014610	6.9547977	P	7.1630964	P	0.865557339323937	0	lncRNA	XR_110521	XR_110521	XR_110521	NA	NA	LOC100506941	uncharacterized LOC100506941	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506941 (LOC100506941), miscRNA [XR_110521]"	chr11:114166851-114166792	hs|11q23.2	Agilent_HUMAN_G3V2	XR_110521	XR_110521	chr11	114166792	114166851	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32358_PI429285431	0.9186963	A	0.9171394	A	1.001079743349	0	lncRNA	34036-1_{1..1571}	n338941|AK001781|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1368|NULL|-1.0764000|-0.3623507	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338941|AK001781|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1368|NULL|-1.0764000|-0.3623507	chr2	114031712	114033282	-	NA	NA	NA	NA	PAX8	NA	chr2:114021712-114036498	inner
CUST_26347_PI429285431	6.985169	P	7.3754315	P	0.762990764814071	0	lncRNA	27854-1_{1..415}	lnc-WDR77-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR77-1:1	chr1	111983760	111984174	-	lnc-WDR77-1	lnc-WDR77-1:1	ENSG00000243960.1	RP11-552M11.4	WDR77	NA	chr1:111982512-111991830	inner
CUST_7240_PI429285431	0.9561214	A	0.95909804	A	0.997938877412842	0	lncRNA	7854-1_{1..263}	"transcript_id ""ENST00000411042.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411042.1"" | genecode_v17"	chr7	 12916309	 12916571	+	ENSG00000222974.1	ENST00000411042.1	RN7SKP228	RN7SKP228-201	NA	NA	NA	inter
CUST_24771_PI429285431	1.8538576	A	1.0681381	A	1.72395187330582	0	lncRNA	26315-1_{1..441}	lnc-SLC25A47-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC25A47-4:2	chr14	100873855	100874295	+	lnc-SLC25A47-4	lnc-SLC25A47-4:2	ENSG00000258620.1	RP11-362L22.1	WDR25	NA	chr14:100863855-100883950	inner
CUST_27979_PI429285431	0.92333794	A	1.0778673	A	0.898425411926969	0	lncRNA	29584-1_{1..581}	n325229|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329692|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329692|-1.0861900|-0.3388910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325229|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329692|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329692|-1.0861900|-0.3388910	chr2	100225524	100226104	+	NA	NA	NA	NA	AFF3	NA	chr2:100215524-100242156	inner
CUST_47817_PI429285431	0.9011619	A	0.8959034	A	1.0036515652277	0	lncRNA	51731-2_{3001..3177}	"gi|341915973|ref|XR_132906.1| PREDICTED: Homo sapiens von Willebrand factor-like (LOC100289038), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915973|ref|XR_132906.1| PREDICTED: Homo sapiens von Willebrand factor-like (LOC100289038), misc_RNA"	NT_167232.1	    12317	    12493	+	100289038	XR_132906.2	NA	NA	NA	NA	NA	Unknown
CUST_26467_PI429285431	0.9164935	A	0.9148268	A	1.00115593598544	0	lncRNA	27975-1_{1..373}	lnc-ZNF286A-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF286A-4:1	chr17	 15168773	 15169145	+	lnc-ZNF286A-4	lnc-ZNF286A-4:1	ENSG00000265445.1	RP11-849N15.1	PMP22	NA	chr17:15158773-15168644	inter
CUST_41159_PI429285431	2.5588622	A	2.089872	A	1.38414031377258	0	lncRNA	41973-1_{1..68}	ENST00000583892 ncrna:miRNA chromosome:GRCh37:17:46801770:46801837:-1 gene:ENSG00000263602 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583892 ncrna:miRNA chromosome:GRCh37:17:46801770:46801837:-1 gene:ENSG00000263602 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 46801770	 46801837	-	ENSG00000263602	ENST00000583892	NA	NA	PRAC	NA	chr17:46799081-46799882	inter
CUST_19962_PI429285431	5.537767	P	4.9207225	P	1.53372996692029	0	lncRNA	21616-1_{1..572}	lnc-AC108463.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC108463.1-3:1	chr2	112252462	112253033	-	lnc-AC108463.1-3	lnc-AC108463.1-3:1	ENSG00000172965.6	AC068491.1	NA	NA	NA	inter
CUST_13709_PI429285431	0.91759706	A	1.4101422	A	0.710770081360385	0	lncRNA	15347-1_{1..377}	lnc-RBPJ-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RBPJ-1:2	chr4	 26105667	 26106043	+	lnc-RBPJ-1	lnc-RBPJ-1:2	XLOC_003479	linc-RBPJ	NA	NA	NA	inter
CUST_17196_PI429285431	0.90465254	A	0.899419	A	1.00363420124872	0	lncRNA	18909-1_{1..418}	lnc-SEZ6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEZ6-2:1	chr17	 27339380	 27339797	-	lnc-SEZ6-2	lnc-SEZ6-2:1	XLOC_012430	linc-SEZ6-1	SEZ6	NA	chr17:27329380-27333081	inter
CUST_24656_PI429285431	0.93114567	A	1.414887	A	0.715120700240642	0	lncRNA	26205-1_{1..416}	lnc-EAPP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EAPP-2:1	chr14	 35015063	 35015478	-	lnc-EAPP-2	lnc-EAPP-2:1	ENSG00000258612.1	RP11-671J11.6	EAPP	NA	chr14:35005063-35008943	inter
CUST_24083_PI429285431	4.351803	P	4.022685	P	1.25624512694821	0	lncRNA	25633-1_{1..2055}	lnc-FPGS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FPGS-1:1	chr9	130584617	130586671	+	lnc-FPGS-1	lnc-FPGS-1:1	ENSG00000225032.1	RP11-228B15.4	ENG	"hg19_refFlat_ENG:range=chr9:130578196-1306166345'pad=0,hg19_refFlat_ENG:range=chr9:130578196-1306166345'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ENG:range=chr9:130577961-1306166345'pad=0,hg19_refFlat_ENG:range=chr9:130577961-1306166345'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40chr9:130577291-130594799"	NA	inner
CUST_36229_PI429285431	1.54069	A	1.5401115	A	1.00040106604944	0	lncRNA	37479-1_{1..1652}	n344770|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_319|NULL|-1.3021600|-0.2854154	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344770|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_319|NULL|-1.3021600|-0.2854154	chr11	  7900553	  7902204	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF649:range=chr19:52393871-524033605'pad=0,hg19_refFlat_ZNF649:range=chr19:52393871-524033605'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80"	NA	inter
CUST_14624_PI429285431	1.4722099	A	1.7739365	A	0.811280883961806	0	lncRNA	16295-1_{1..319}	lnc-ARAP2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARAP2-7:1	chr4	 32561642	 32561960	-	lnc-ARAP2-7	lnc-ARAP2-7:1	XLOC_003919	linc-CCKAR-4	NA	NA	NA	inter
CUST_32292_PI429285431	2.6736546	A	1.9445293	A	1.65763377044132	0	lncRNA	33976-1_{1..773}	n338869|BC040863|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1294|NULL|-0.7171840|-0.2336754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338869|BC040863|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1294|NULL|-0.7171840|-0.2336754	chr2	 67313577	 67314349	+	NA	NA	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00"	NA	inter
CUST_38505_PI429285431	7.7702737	P	7.7045407	P	1.04661656641062	0	lncRNA	39518-1_{1..1829}	n383067|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gqq.1||7.7658100|-0.0843825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n383067|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gqq.1||7.7658100|-0.0843825	chr17	 16721340	 16723168	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25076_PI429285431	0.9205452	A	0.9193954	A	1.00079729830166	0	lncRNA	26613-1_{1..638}	lnc-C9orf38-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C9orf38-1:1	chr9	  6449340	  6449977	-	lnc-C9orf38-1	lnc-C9orf38-1:1	ENSG00000233367.1	RP11-307L3.4	UHRF2	NA	chr9:6439340-6459558	inter
CUST_11153_PI429285431	0.9299081	A	0.9724737	A	0.970926774856342	0	lncRNA	12711-1_{1..365}	lnc-LRRC4C-5:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC4C-5:6	chr11	 38641256	 38641620	-	lnc-LRRC4C-5	lnc-LRRC4C-5:6	XLOC_009417	linc-RAG2-1	NA	NA	NA	inter
CUST_28362_PI429285431	1.0850532	A	0.9238554	A	1.11821515279962	0	lncRNA	30012-1_{1..913}	n325674|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045403|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045403|-0.9910940|-0.3727080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325674|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045403|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045403|-0.9910940|-0.3727080	chr13	 84835736	 84836648	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25366_PI429285431	0.9215922	A	0.9132497	A	1.00579933174478	0	lncRNA	26896-1_{1..2214}	lnc-TM4SF20-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TM4SF20-1:2	chr2	228189884	228192097	-	lnc-TM4SF20-1	lnc-TM4SF20-1:2	ENSG00000236432.2	AC097662.2	MFF	"hg19_refFlat_COL4A3:range=chr2:228029443-2281765865'pad=0,hg19_refFlat_COL4A3:range=chr2:228029443-2281765865'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30chr2:228192228-228199902"	NA	inter
CUST_2846_PI429285431	5.3668113	P	5.796857	P	0.742238273189389	0	lncRNA	2829-1_{1..673}	"transcript_id ""ENST00000451103.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451103.1"" | genecode_v17"	chr7	 62854655	 62855327	+	ENSG00000234387.1	ENST00000451103.1	RP11-340I6.1	RP11-340I6.1-001	LOC100506447	NA	chr7:62857832-62859970	inter
CUST_41117_PI429285431	0.9154907	A	1.2863617	A	0.773315481130456	0	lncRNA	41873-1_{1..96}	ENST00000581016 ncrna:miRNA chromosome:GRCh37:11:81601783:81601878:-1 gene:ENSG00000264110 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581016 ncrna:miRNA chromosome:GRCh37:11:81601783:81601878:-1 gene:ENSG00000264110 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 81601783	 81601878	-	ENSG00000264110	ENST00000581016	NA	NA	NA	NA	NA	inter
CUST_34658_PI429285431	2.595131	A	1.4739902	A	2.1751890591948	0	lncRNA	36110-1_{1..767}	n341558|AL049240|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4029|NULL|-1.1493300|-0.3005446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341558|AL049240|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4029|NULL|-1.1493300|-0.3005446	chr8	 92967202	 92967968	-	NA	NA	NA	NA	RUNX1T1	NA	chr8:92967195-92977952	inner
CUST_23253_PI429285431	5.426773	P	5.428562	P	0.998760728226255	0	lncRNA	24825-1_{1..366}	lnc-C20orf78-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C20orf78-4:1	chr20	 19193873	 19194238	-	lnc-C20orf78-4	lnc-C20orf78-4:1	ENSG00000235996.1	RP11-97N19.2	SLC24A3	"hg19_refFlat_SLC24A3:range=chr20:19193487-197017845'pad=0,hg19_refFlat_SLC24A3:range=chr20:19193487-197017845'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.00chr20:19193290-19204121"	NA	inner
CUST_26985_PI429285431	0.96233153	A	1.0566158	A	0.936736853168235	0	lncRNA	28511-1_{1..416}	n324076|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052540|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052540|-1.2043800|-0.4502341	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324076|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052540|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052540|-1.2043800|-0.4502341	chr9	 70112128	 70112543	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22876_PI429285431	6.2921724	P	5.56618	P	1.65403802352596	0	lncRNA	24453-1_{1..230}	lnc-TBCD-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBCD-2:1	chr17	 80939335	 80939564	+	lnc-TBCD-2	lnc-TBCD-2:1	ENSG00000262339.1	RP11-1197K16.2	B3GNTL1	NA	chr17:80929335-80949384	inner
CUST_23676_PI429285431	3.185058	P	3.6719828	P	0.713544445156904	0	lncRNA	25241-1_{1..342}	lnc-PDZD7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDZD7-2:1	chr10	102745204	102745545	-	lnc-PDZD7-2	lnc-PDZD7-2:1	ENSG00000236662.1	RP11-108L7.4	MRPL43	"hg19_refFlat_SEMA4G:range=chr10:102732670-1027438885'pad=0,hg19_refFlat_SEMA4G:range=chr10:102732670-1027438885'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_SEMA4G:range=chr10:102732670-1027446505'pad=0,hg19_refFlat_SEMA4G:range=chr10:102732670-1027446505'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10chr10:102737579-102747272"	NA	inner
CUST_27173_PI429285431	0.93033427	A	1.0477798	A	0.921818399963222	0	lncRNA	28712-1_{1..2246}	n324301|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043190|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043190|-1.1090500|-0.2554266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324301|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043190|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043190|-1.1090500|-0.2554266	chr6	168386466	168388711	+	NA	NA	NA	NA	HGC6.3	NA	chr6:168376604-168377619	inter
CUST_40391_PI429285431	2.9613788	P	3.2463725	P	0.820745192855136	0	lncRNA	41183-2_{3001..4774}	n409244|NR_033411|lncRNA|Homosapiens||RefGeneNoncode|NR_033411||10.8076000|-0.2513982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409244|NR_033411|lncRNA|Homosapiens||RefGeneNoncode|NR_033411||10.8076000|-0.2513982	chr22	 32458156	 32459929	+	NA	NA	NA	NA	SLC5A1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90chr22:32445156-32509016"	NA	inner
CUST_23268_PI429285431	7.816284	P	7.9044576	P	0.940712904389491	0	lncRNA	24839-1_{1..621}	lnc-GK-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GK-3:1	chrX	 31187560	 31188180	+	lnc-GK-3	lnc-GK-3:1	ENSG00000244186.1	DMD-AS1	DMD	"hg19_refFlat_DMD:range=chrX:31140036-315263545'pad=0,hg19_refFlat_DMD:range=chrX:31140036-315263545'pad=0 3'pad=0 strand=- repeatMasking=none,-97.90;hg19_refFlat_DMD:range=chrX:31140036-324303265'pad=0,hg19_refFlat_DMD:range=chrX:31140036-324303265'pad=0 3'pad=0 strand=- repeatMasking=none,-97.90;hg19_refFlat_DMD:range=chrX:31140036-312849465'pad=0,hg19_refFlat_DMD:range=chrX:31140036-312849465'pad=0 3'pad=0 strand=- repeatMasking=none,-97.90;hg19_refFlat_DMD:range=chrX:31139950-317922385'pad=0,hg19_refFlat_DMD:range=chrX:31139950-317922385'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20;hg19_refFlat_DMD:range=chrX:31140036-332294295'pad=0,hg19_refFlat_DMD:range=chrX:31140036-332294295'pad=0 3'pad=0 strand=- repeatMasking=none,-97.90;hg19_refFlat_DMD:range=chrX:31140036-331462825'pad=0,hg19_refFlat_DMD:range=chrX:31140036-331462825'pad=0 3'pad=0 strand=- repeatMasking=none,-97.90;hg19_refFlat_DMD:range=chrX:31140036-328347455'pad=0,hg19_refFlat_DMD:range=chrX:31140036-328347455'pad=0 3'pad=0 strand=- repeatMasking=none,-97.90;hg19_refFlat_DMD:range=chrX:31140036-324301745'pad=0,hg19_refFlat_DMD:range=chrX:31140036-324301745'pad=0 3'pad=0 strand=- repeatMasking=none,-97.90;hg19_refFlat_DMD:range=chrX:31140036-333573825'pad=0,hg19_refFlat_DMD:range=chrX:31140036-333573825'pad=0 3'pad=0 strand=- repeatMasking=none,-97.90;hg19_refFlat_DMD:range=chrX:31140036-317922385'pad=0,hg19_refFlat_DMD:range=chrX:31140036-317922385'pad=0 3'pad=0 strand=- repeatMasking=none,-97.90;hg19_refFlat_DMD:range=chrX:31139950-312849465'pad=0,hg19_refFlat_DMD:range=chrX:31139950-312849465'pad=0 3'pad=0 strand=- repeatMasking=none,-97.90chrX:31177560-31197673"	NA	inner
CUST_36495_PI429285431	2.746121	A	2.5870628	A	1.11655800432574	0	lncRNA	37695-2_{3001..3981}	n344995|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_544|NULL|-1.3125200|-0.2492554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344995|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_544|NULL|-1.3125200|-0.2492554	chr8	 28916454	 28917434	+	NA	NA	NA	NA	HMBOX1	NA	chr8:28903454-28910242	inter
CUST_3524_PI429285431	5.1231327	P	5.441123	P	0.802186559857871	0	lncRNA	3493-1_{1..404}	"transcript_id ""ENST00000415101.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415101.1"" | genecode_v17"	chr9	117418584	117418987	-	ENSG00000230054.1	ENST00000415101.1	RP11-402G3.5	RP11-402G3.5-002	LOC100505478	NA	chr9:117428714-117434654	inter
CUST_52117_PI429285431	0.91481745	A	0.9225366	A	0.994663781409199	0	lncRNA	55642-1_{1..667}	hg19_lincRNAsTranscripts_TCONS_l2_00017589 range=chr22:18985666-19002321 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017589 range=chr22:18985666-19002321 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 18985666	 18986332	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3413_PI429285431	5.0564885	P	5.42233	P	0.7760161056918	0	lncRNA	3385-1_{1..439}	"transcript_id ""ENST00000377547.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000377547.3"" | genecode_v17"	chr9	 45001907	 45002345	-	ENSG00000235659.1	ENST00000377547.3	RP11-374M1.5	RP11-374M1.5-001	LOC100132439	NA	chr9:44998147-44998488	inter
CUST_51840_PI429285431	2.765433	A	2.9433742	A	0.883963558080151	0	lncRNA	55395-1_{1..914}	hg19_lincRNAsTranscripts_TCONS_l2_00013113 range=chr19:41324357-41332324 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013113 range=chr19:41324357-41332324 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 41324357	 41325270	-	NA	NA	NA	NA	LOC100652943	NA	chr19:41314400-41321962	inter
CUST_40449_PI429285431	1.072041	A	0.92740023	A	1.10545536147914	0	lncRNA	41224-1_{1..3000}	n409347|NR_033710|lncRNA|Homosapiens||RefGeneNoncode|NR_033710||1.6581600|-0.1888462	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409347|NR_033710|lncRNA|Homosapiens||RefGeneNoncode|NR_033710||1.6581600|-0.1888462	chr1	  3652547	  3655546	-	NA	NA	NA	NA	CCDC27	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50chr1:3668965-3673937"	NA	inter
CUST_29136_PI429285431	3.9061222	P	4.3198547	P	0.750678724354081	0	lncRNA	30877-1_{1..440}	n326644|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000012077|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000012077|-1.2638900|-0.3337347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326644|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000012077|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000012077|-1.2638900|-0.3337347	chr1	 35414565	 35415004	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22139_PI429285431	5.5223193	P	5.657875	P	0.910319127613047	0	lncRNA	23741-1_{1..204}	lnc-SENP5-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SENP5-2:3	chr3	196730473	196730676	+	lnc-SENP5-2	lnc-SENP5-2:3	ENSG00000228109.1	MFI2-AS1	MFI2	NA	chr3:196720473-196740601	inner
CUST_26200_PI429285431	4.862625	P	4.810145	P	1.03704607989933	0	lncRNA	27711-1_{1..432}	lnc-BMP3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BMP3-1:2	chr4	 82114214	 82114645	+	lnc-BMP3-1	lnc-BMP3-1:2	ENSG00000251059.1	RP11-100N20.1	PRKG2	NA	chr4:82104214-82124334	inner
CUST_28800_PI429285431	2.6056042	A	2.534159	A	1.05076874979384	0	lncRNA	30508-1_{1..549}	n326207|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092506|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092506|-0.7422700|-0.3070344	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326207|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092506|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092506|-0.7422700|-0.3070344	chr1	221070944	221071492	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24907_PI429285431	0.9155821	A	1.7881534	A	0.546172545133201	0	lncRNA	26448-1_{1..573}	lnc-NEK11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NEK11-1:1	chr3	130574725	130575297	+	lnc-NEK11-1	lnc-NEK11-1:1	ENSG00000249179.1	RP11-39E3.6	ATP2C1	NA	chr3:130564725-130585067	inner
CUST_30843_PI429285431	7.2631965	P	8.286391	P	0.49202567305779	0	lncRNA	32631-1_{1..288}	n336816|AB231759|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000329999|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000329999|0.1495130|-0.2126096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336816|AB231759|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000329999|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000329999|0.1495130|-0.2126096	chr11	 33720003	 33720290	-	NA	NA	NA	NA	CD59	NA	chr11:33724556-33731943	inner
CUST_19638_PI429285431	2.5280216	A	2.584176	A	0.96182451284579	0	lncRNA	21294-1_{1..1000}	lnc-RAD51C-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAD51C-1:3	chr17	 56620818	 56621817	+	lnc-RAD51C-1	lnc-RAD51C-1:3	ENSG00000264672.1	RP11-112H10.4	4-Sep	"hg19_refFlat_SEPT4:range=chr17:56597787-566035905'pad=0,hg19_refFlat_SEPT4:range=chr17:56597787-566035905'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPT4:range=chr17:56597787-566180345'pad=0,hg19_refFlat_SEPT4:range=chr17:56597787-566180345'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPT4:range=chr17:56597787-566180625'pad=0,hg19_refFlat_SEPT4:range=chr17:56597787-566180625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPT4:range=chr17:56597787-566065355'pad=0,hg19_refFlat_SEPT4:range=chr17:56597787-566065355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C17orf47:range=chr17:56619176-566215475'pad=0,hg19_refFlat_C17orf47:range=chr17:56619176-566215475'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_SEPT4:range=chr17:56599243-566093245'pad=0,hg19_refFlat_SEPT4:range=chr17:56599243-566093245'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPT4:range=chr17:56597787-566093245'pad=0,hg19_refFlat_SEPT4:range=chr17:56597787-566093245'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70chr17:56610818-56618179"	NA	inner
CUST_51611_PI429285431	1.4602362	A	1.6130217	A	0.89951204171958	0	lncRNA	55177-1_{1..519}	hg19_lincRNAsTranscripts_TCONS_l2_00011646 range=chr17:38873487-38875392 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011646 range=chr17:38873487-38875392 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 38873487	 38874005	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2829_PI429285431	1.6795902	A	1.4423544	A	1.1787320488732	0	lncRNA	2813-1_{1..360}	"transcript_id ""ENST00000440351.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440351.1"" | genecode_v17"	chr7	 50314386	 50314745	-	ENSG00000235620.1	ENST00000440351.1	AC020743.4	AC020743.4-001	NA	NA	NA	inter
CUST_2113_PI429285431	0.9205655	A	1.1816463	A	0.834462544693554	0	lncRNA	2104-1_{1..937}	"transcript_id ""ENST00000502100.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502100.2"" | genecode_v17"	chr5	 25190791	 25191727	+	ENSG00000245662.2	ENST00000502100.2	RP11-184E9.1	RP11-184E9.1-001	NA	NA	NA	inter
LNCA_21_P0012488	0.9403168	A	0.9218713	A	1.01286752958851	0	lncRNA	ENST00000425894	NA	NA	NA	NA	XLOC_l2_009613	NA	ENST00000425894	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009613), lincRNA [TCONS_l2_00019753]"	chr3:6165745-6165804	hs|3p26.1	Agilent_HUMAN_G3V2	ENST00000425894	ENST00000425894	chr3	  6165745	  6165804	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5434_PI429285431	5.7125797	P	5.3264666	P	1.30686770170049	0	lncRNA	5368-1_{1..885}	"transcript_id ""ENST00000575767.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000575767.1"" | genecode_v17"	chr16	 14112737	 14113621	-	ENSG00000261856.1	ENST00000575767.1	CTD-2135D7.4	CTD-2135D7.4-001	NA	NA	NA	inter
CUST_34075_PI429285431	1.0487347	A	0.90426713	A	1.10532265611129	0	lncRNA	35604-1_{1..222}	n340899|U80232|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3364|NULL|1.0796100|-0.3161508	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340899|U80232|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3364|NULL|1.0796100|-0.3161508	chr6	 27368314	 27368535	+	NA	NA	NA	NA	ZNF391	NA	chr6:27358314-27369227	inner
CUST_41528_PI429285431	5.1456985	P	4.8579917	P	1.22069840400209	0	lncRNA	42778-1_{1..85}	ENST00000578688 ncrna:miRNA chromosome:GRCh37:10:97824072:97824156:-1 gene:ENSG00000266407 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578688 ncrna:miRNA chromosome:GRCh37:10:97824072:97824156:-1 gene:ENSG00000266407 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 97824072	 97824156	-	ENSG00000266407	ENST00000578688	NA	NA	CCNJ	NA	chr10:97814072-97820627	inter
CUST_28286_PI429285431	1.214607	A	1.699613	A	0.714494098366948	0	lncRNA	29922-1_{1..2082}	n325581|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256341|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256341|0.8953840|-0.1808671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325581|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256341|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256341|0.8953840|-0.1808671	chr17	  8064684	  8066765	-	NA	NA	NA	NA	TMEM107	NA	chr17:8076296-8078086	inner
CUST_33312_PI429285431	0.9140869	A	0.90498894	A	1.0063261514259	0	lncRNA	34895-1_{1..2916}	n340029|AK092543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2483|NULL|-0.9710790|-0.2851457	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340029|AK092543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2483|NULL|-0.9710790|-0.2851457	chr10	 51557352	 51560267	+	NA	NA	NA	NA	MSMB	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80chr10:51549553-51562517"	NA	inner
CUST_52081_PI429285431	4.656522	P	4.2675953	P	1.30941889284645	0	lncRNA	55610-1_{1..512}	hg19_lincRNAsTranscripts_TCONS_l2_00017544 range=chr22:17082244-17128645 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017544 range=chr22:17082244-17128645 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17082244	 17082755	+	NA	NA	NA	NA	CCT8L2	NA	chr22:17072244-17073700	inter
CUST_51368_PI429285431	3.631732	P	3.4946887	P	1.09964915288942	0	lncRNA	54964-1_{1..499}	hg19_lincRNAsTranscripts_TCONS_l2_00008800 range=chr15:85116306-85133575 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008800 range=chr15:85116306-85133575 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 85116306	 85116804	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40770_PI429285431	3.0195568	A	3.1729681	P	0.899121943639776	0	lncRNA	41491-1_{1..3000}	n410491|NR_037633|lncRNA|Homosapiens||RefGeneNoncode|NR_037633||4.9840900|-0.3603942	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410491|NR_037633|lncRNA|Homosapiens||RefGeneNoncode|NR_037633||4.9840900|-0.3603942	chr1	 39328161	 39331160	-	NA	NA	NA	NA	RRAGC	NA	chr1:39318161-39325340	inter
CUST_50176_PI429285431	0.9222056	A	1.2561527	A	0.793362933281941	0	lncRNA	53902-1_{1..1965}	hg19_lincRNAsTranscripts_TCONS_l2_00029247 range=chr9:34663495-34665821 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029247 range=chr9:34663495-34665821 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 34663495	 34665459	-	NA	NA	NA	NA	IL11RA	NA	chr9:34653495-34661884	inter
CUST_42787_PI429285431	5.5665836	P	6.1142936	P	0.684105151942772	0	lncRNA	45777-1_{1..76}	ENST00000390856 ncrna:snoRNA chromosome:GRCh37:3:184043484:184043559:1 gene:ENSG00000212158 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390856 ncrna:snoRNA chromosome:GRCh37:3:184043484:184043559:1 gene:ENSG00000212158 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	184043484	184043559	+	ENSG00000212158	ENST00000390856	NA	NA	EIF4G1	NA	chr3:184033484-184053146	inner
CUST_46516_PI429285431	4.864076	P	4.2646084	P	1.51515732245866	0	lncRNA	50707-1_{1..481}	"gi|302371204|ref|NR_036495.1| Homo sapiens TBC1 domain family, member 2B pseudogene (LOC646938), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|302371204|ref|NR_036495.1| Homo sapiens TBC1 domain family, member 2B pseudogene (LOC646938), non-coding RNA"	Chr15	 79044379	 79044859	+	646938	NR_036495.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008765	4.4102945	P	4.743531	P	0.793753800754428	0	lncRNA	THC2654585	NA	NA	NA	NA	XLOC_011545	NA	NA	THC2654585	NA	"BROAD Institute lincRNA (XLOC_011545), lincRNA [TCONS_00023754]"	chr15:080637272-080637213	hs|15q25.1	Agilent_HUMAN_G3V2	THC2654585	THC2654585	chr15	 80637213	 80637272	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20524_PI429285431	0.91432065	A	0.8983817	A	1.01110929320271	0	lncRNA	22166-1_{1..681}	lnc-AGGF1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGGF1-3:5	chr5	 76401481	 76402161	+	lnc-AGGF1-3	lnc-AGGF1-3:5	ENSG00000250802.2	CTC-564N23.3	NA	NA	NA	inter
CUST_2773_PI429285431	2.0458832	A	0.8899587	A	2.22827068736172	0	lncRNA	2756-1_{1..442}	"transcript_id ""ENST00000451792.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451792.1"" | genecode_v17"	chr7	 17503069	 17503510	-	ENSG00000226598.1	ENST00000451792.1	AC017060.1	AC017060.1-001	NA	NA	NA	inter
LNCA_21_P0011916	0.92654586	A	0.912156	A	1.01002419992474	0	lncRNA	TCONS_l2_00014568	NA	NA	NA	NA	XLOC_l2_008014	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008014), lincRNA [TCONS_l2_00014568]"	chr2:51427709-51427650	hs|2p16.3	Agilent_HUMAN_G3V2	TCONS_l2_00014568	TCONS_l2_00014568	chr2	 51427650	 51427709	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36033_PI429285431	1.2533833	A	1.4368676	A	0.880573723674154	0	lncRNA	37358-2_{3001..5700}	n344639|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_187|NULL|-1.5430200|-0.2933511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344639|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_187|NULL|-1.5430200|-0.2933511	chr10	  6824471	  6827170	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40"	NA	inter
CUST_26845_PI429285431	3.835969	P	3.1871667	A	1.56786604059693	0	lncRNA	28359-1_{1..860}	n323917|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055667|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055667|-0.2113410|-0.1519759	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323917|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055667|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055667|-0.2113410|-0.1519759	chrX	  5581461	  5582320	-	NA	NA	NA	NA	NA	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80"	NA	inter
LNCA_21_P0003505	0.9248298	A	0.9097888	A	1.01048016294923	0	lncRNA	ENST00000510967	NA	NA	NA	NA	XLOC_004078	NA	ENST00000510967	NA	NA	"BROAD Institute lincRNA (XLOC_004078), lincRNA [TCONS_00007832]"	chr4:132948580-132948521	hs|4q28.3	Agilent_HUMAN_G3V2	ENST00000510967	ENST00000510967	chr4	132948521	132948580	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35662_PI429285431	0.9013658	A	0.89330333	A	1.00560412302371	0	lncRNA	37083-1_{1..2060}	n342821|AK095429|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5324|NULL|-1.0879400|-0.3860551	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342821|AK095429|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5324|NULL|-1.0879400|-0.3860551	chr7	112715178	112717237	-	NA	NA	NA	NA	GPR85	NA	chr7:112720468-112727236	inter
CUST_85_PI429285431	3.991725	P	4.406663	P	0.750051727517191	0	lncRNA	79-1_{1..649}	"transcript_id ""ENST00000358469.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000358469.4"" | genecode_v17"	chr19	  7019311	  7019959	-	ENSG00000196589.4	ENST00000358469.4	CTB-25J19.1	CTB-25J19.1-001	MBD3L5	"hg19_refFlat_MBD3L3:range=chr19:7056333-70586165'pad=0,hg19_refFlat_MBD3L3:range=chr19:7056333-70586165'pad=0 3'pad=0 strand=- repeatMasking=none,-101.60;hg19_refFlat_MBD3L4:range=chr19:7037872-70401555'pad=0,hg19_refFlat_MBD3L4:range=chr19:7037872-70401555'pad=0 3'pad=0 strand=- repeatMasking=none,-101.60;hg19_refFlat_MBD3L2:range=chr19:7049385-70516335'pad=0,hg19_refFlat_MBD3L2:range=chr19:7049385-70516335'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.60;hg19_refFlat_MBD3L5:range=chr19:7030623-70329055'pad=0,hg19_refFlat_MBD3L5:range=chr19:7030623-70329055'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.60chr19:7030594-7031442"	NA	inter
CUST_27824_PI429285431	1.0319005	A	1.3610986	A	0.795978793471033	0	lncRNA	29410-1_{1..734}	n325052|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078197|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078197|-1.2238800|-0.2493931	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325052|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078197|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078197|-1.2238800|-0.2493931	chr20	 18717190	 18717923	-	NA	NA	NA	NA	DTD1	"hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr20:18707190-18732979"	NA	inner
CUST_13193_PI429285431	1.7617898	A	1.722281	A	1.02776384032089	0	lncRNA	14821-1_{1..424}	lnc-RP11-1286E23.8.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-1286E23.8.1-1:1	chr4	  9174843	  9175266	+	lnc-RP11-1286E23.8.1-1	lnc-RP11-1286E23.8.1-1:1	XLOC_003448	linc-USP17	LOC100287045	NA	chr4:9174899-9177893	inter
CUST_21128_PI429285431	0.90844685	A	0.8951756	A	1.00924136970711	0	lncRNA	22754-1_{1..288}	lnc-C14orf126-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C14orf126-2:1	chr14	 32030317	 32030604	-	lnc-C14orf126-2	lnc-C14orf126-2:1	ENSG00000257155.1	CTD-2213F21.3	NUBPL	NA	chr14:32030591-32040540	inter
LNCA_21_P0002309	2.390579	A	2.9444444	A	0.681192567994521	0	lncRNA	TCONS_00003924	NA	NA	NA	NA	XLOC_001734	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001734), lincRNA [TCONS_00003924]"	chr2:164309788-164309847	hs|2q24.3	Agilent_HUMAN_G3V2	TCONS_00003924	TCONS_00003924	chr2	164309788	164309847	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13133_PI429285431	0.9155003	A	0.91763854	A	0.998518982762699	0	lncRNA	14761-1_{1..1929}	lnc-PHLDA3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHLDA3-2:1	chr1	201429915	201431843	-	lnc-PHLDA3-2	lnc-PHLDA3-2:1	XLOC_001153	linc-TNNI1	PHLDA3	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80chr1:201434622-201438299"	NA	inter
CUST_4459_PI429285431	3.5092213	P	1.0388694	A	5.5417894525302	0	lncRNA	4409-1_{1..575}	"transcript_id ""ENST00000602688.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602688.1"" | genecode_v17"	chr12	123773656	123774230	-	ENSG00000270113.1	ENST00000602688.1	RP11-282O18.6	RP11-282O18.6-001	SBNO1	NA	chr12:123773656-123784230	inner
CUST_2156_PI429285431	13.125691	P	13.153561	P	0.980867385116643	0	lncRNA	2147-1_{1..432}	"transcript_id ""ENST00000508923.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508923.2"" | genecode_v17"	chr5	 50265494	 50265925	+	ENSG00000248918.2	ENST00000508923.2	CTD-2089N3.3	CTD-2089N3.3-001	NA	NA	NA	inter
LNCA_21_P0003257	0.92118776	A	0.9057165	A	1.01078156693303	0	lncRNA	TCONS_00007011	NA	NA	NA	NA	XLOC_002884	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002884), lincRNA [TCONS_00007011]"	chr3:153481134-153481193	hs|3q25.2	Agilent_HUMAN_G3V2	TCONS_00007011	TCONS_00007011	chr3	153481134	153481193	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5258_PI429285431	7.279315	P	7.624027	P	0.78746515970524	0	lncRNA	5198-1_{1..594}	"transcript_id ""ENST00000557790.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557790.1"" | genecode_v17"	chr15	 79529189	 79529782	-	ENSG00000259234.1	ENST00000557790.1	RP11-17L5.4	RP11-17L5.4-001	ANKRD34C	"hg19_refFlat_HNRNPC:range=chr14:21679382-217023525'pad=0,hg19_refFlat_HNRNPC:range=chr14:21679382-217023525'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LOC649330:range=chr1:12907261-129081425'pad=0,hg19_refFlat_LOC649330:range=chr1:12907261-129081425'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_HNRNPCL1:range=chr1:12907261-129081425'pad=0,hg19_refFlat_HNRNPCL1:range=chr1:12907261-129081425'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_LOC440563:range=chr1:13182991-131838725'pad=0,hg19_refFlat_LOC440563:range=chr1:13182991-131838725'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10chr15:79575146-79586287"	NA	inter
CUST_2601_PI429285431	1.8072753	A	2.6190882	A	0.569665562515571	0	lncRNA	2588-1_{1..599}	"transcript_id ""ENST00000417773.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417773.1"" | genecode_v17"	chr6	109080364	109080962	+	ENSG00000203801.4	ENST00000417773.1	LINC00222	LINC00222-006	NA	NA	NA	inter
CUST_33237_PI429285431	5.292131	P	5.127308	P	1.12102853390637	0	lncRNA	34824-1_{1..653}	n339937|AF086274|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2386|NULL|3.1723100|-0.1219097	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339937|AF086274|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2386|NULL|3.1723100|-0.1219097	chr10	  1568824	  1569476	+	NA	NA	NA	NA	ADARB2	NA	chr10:1558824-1609179	inter
CUST_4285_PI429285431	1.1755159	A	0.89598596	A	1.2137993389325	0	lncRNA	4240-2_{3001..3546}	"transcript_id ""ENST00000535058.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000535058.1"" | genecode_v17"	chr12	 65280174	 65280719	+	ENSG00000255693.1	ENST00000535058.1	RP11-766N7.3	RP11-766N7.3-001	TBC1D30	NA	chr12:65267174-65274802	inter
LNCA_21_P0004719	1.7616379	A	0.90368795	A	1.81246099751735	0	lncRNA	ENST00000443445	NA	NA	NA	NA	XLOC_005584	NA	ENST00000443445	THC2776454	NA	"BROAD Institute lincRNA (XLOC_005584), lincRNA [TCONS_00011435]"	chr6:3594607-3594548	hs|6p25.2	Agilent_HUMAN_G3V2	ENST00000443445	ENST00000443445	chr6	  3594548	  3594607	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48828_PI429285431	5.4017215	P	5.3895435	P	1.0084768732955	0	lncRNA	52666-1_{1..731}	hg19_lincRNAsTranscripts_TCONS_l2_00014356 range=chr2:243036928-243101623 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014356 range=chr2:243036928-243101623 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	243036928	243037658	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24844_PI429285431	5.4958577	P	4.452091	P	2.06160322622374	0	lncRNA	26384-1_{1..559}	lnc-BHMT2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BHMT2-1:6	chr5	 77712365	 77712923	+	lnc-BHMT2-1	lnc-BHMT2-1:6	ENSG00000085365.12	SCAMP1	SCAMP1	NA	chr5:77702365-77722459	inner
LNCA_21_P0008468	4.1735096	P	4.5241776	P	0.784220902040546	0	lncRNA	TCONS_00022818	NA	NA	NA	NA	XLOC_011090	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011090), lincRNA [TCONS_00022818]"	chr14:84369916-84369857	hs|14q31.2	Agilent_HUMAN_G3V2	TCONS_00022818	TCONS_00022818	chr14	 84369857	 84369916	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1259_PI429285431	0.9016506	A	0.90191615	A	0.999815951705168	0	lncRNA	1251-1_{1..1134}	"transcript_id ""ENST00000423838.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423838.1"" | genecode_v17"	chr2	227044760	227045893	-	ENSG00000235070.3	ENST00000423838.1	AC068138.1	AC068138.1-001	NA	NA	NA	inter
CUST_36722_PI429285431	7.3877277	P	7.4490414	P	0.958391023031508	0	lncRNA	37899-2_{3001..3515}	n345206|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_755|NULL|-1.3223500|-0.2328543	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n345206|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_755|NULL|-1.3223500|-0.2328543	chr13	111418060	111418574	+	NA	NA	NA	NA	NA	"hg19_refFlat_RPL21:range=chr13:27827914-278306625'pad=0,hg19_refFlat_RPL21:range=chr13:27827914-278306625'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
LNCA_21_P0007669	0.91784275	A	0.9031163	A	1.01025987253524	0	lncRNA	TCONS_00020653	NA	NA	NA	NA	XLOC_009952	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009952), lincRNA [TCONS_00020653]"	chr12:130444545-130444604	hs|12q24.33	Agilent_HUMAN_G3V2	TCONS_00020653	TCONS_00020653	chr12	130444545	130444604	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44271_PI429285431	0.9243896	A	1.0931041	A	0.889635029126646	0	lncRNA	48910-2_{3001..3646}	"gi|377823734|ref|NR_046371.1| Homo sapiens ceruloplasmin (ferroxidase) (CP), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|377823734|ref|NR_046371.1| Homo sapiens ceruloplasmin (ferroxidase) (CP), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_046371.1	NA	NA	NA	"hg19_refFlat_HPS3:range=chr3:148847511-1488900095'pad=0,hg19_refFlat_HPS3:range=chr3:148847511-1488900095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40"	NA	Unknown
CUST_34343_PI429285431	0.8955809	A	0.88998115	A	1.00388899351055	0	lncRNA	35835-1_{1..752}	n341214|BC028376|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3682|NULL|-0.8769560|-0.2319505	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341214|BC028376|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3682|NULL|-0.8769560|-0.2319505	chr7	 27451782	 27452533	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24608_PI429285431	4.2227893	P	5.1357903	P	0.531079225131491	0	lncRNA	26157-1_{1..563}	lnc-GNG11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNG11-2:1	chr7	 93629609	 93630171	+	lnc-GNG11-2	lnc-GNG11-2:1	ENSG00000236861.2	AC006378.2	BET1	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80chr7:93621000-93633690"	NA	inner
LNCA_21_P0001320	4.706613	P	4.5049486	P	1.15002434334743	0	lncRNA	TCONS_00000984	NA	NA	NA	NA	XLOC_000255	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000255), lincRNA [TCONS_00000984]"	chr1:73315992-73319838	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_00000984	TCONS_00000984	chr1	 73315992	 73319838	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009460	0.9184497	A	0.90437794	A	1.00980152411939	0	lncRNA	TCONS_00026290	NA	NA	NA	NA	XLOC_012632	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012632), lincRNA [TCONS_00026290]"	chr18:12438557-12438616	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_00026290	TCONS_00026290	chr18	 12438557	 12438616	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36419_PI429285431	0.91848356	A	0.9086915	A	1.00681042496644	0	lncRNA	37635-3_{6001..7686}	n344934|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_483|NULL|-1.2951200|-0.3220261	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n344934|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_483|NULL|-1.2951200|-0.3220261	chr6	167397322	167399007	-	NA	NA	NA	NA	FGFR1OP	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.82;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10chr6:167412816-167421574"	NA	inter
CUST_12205_PI429285431	6.199104	P	6.590851	P	0.762206068660224	0	lncRNA	13806-1_{1..406}	lnc-ADCY6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADCY6-1:1	chr12	 49204062	 49204467	-	lnc-ADCY6-1	lnc-ADCY6-1:1	XLOC_010065	linc-ADCY6-1	CACNB3	NA	chr12:49208215-49214315	inter
CUST_10899_PI429285431	0.89619833	A	1.1921601	A	0.814529147005717	0	lncRNA	12441-1_{1..898}	lnc-INSIG2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INSIG2-1:5	chr2	118815208	118816105	+	lnc-INSIG2-1	lnc-INSIG2-1:5	XLOC_001637	linc-INSIG2-1	NA	NA	NA	inter
CUST_35359_PI429285431	1.4579387	A	1.4349157	A	1.01608634170439	0	lncRNA	36769-1_{1..1637}	n342402|AL137376|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4894|NULL|-0.8838550|-0.1460482	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342402|AL137376|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4894|NULL|-0.8838550|-0.1460482	chr19	 46713498	 46715134	+	NA	NA	NA	NA	IGFL1	NA	chr19:46722592-46728095	inter
CUST_27019_PI429285431	0.91489583	A	0.90387034	A	1.00767156411852	0	lncRNA	28549-1_{1..679}	n324124|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052320|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052320|0.4717530|-0.2806394	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324124|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052320|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052320|0.4717530|-0.2806394	chr9	 35632510	 35633188	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00"	NA	inter
CUST_4875_PI429285431	1.0730046	A	0.8877944	A	1.13698261901003	0	lncRNA	4818-1_{1..553}	"transcript_id ""ENST00000556182.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556182.1"" | genecode_v17"	chr14	 69650791	 69651343	-	ENSG00000258957.1	ENST00000556182.1	RP11-363J20.1	RP11-363J20.1-003	EXD2	NA	chr14:69658194-69668137	inter
CUST_40597_PI429285431	2.5216434	A	0.9910606	A	2.88902522382307	0	lncRNA	41343-1_{1..2328}	n410069|NR_036507|lncRNA|Homosapiens||RefGeneNoncode|NR_036507||2.6330600|-0.5097525	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410069|NR_036507|lncRNA|Homosapiens||RefGeneNoncode|NR_036507||2.6330600|-0.5097525	chr15	 49448494	 49450821	+	NA	NA	NA	NA	GALK2	NA	chr15:49447976-49460822	inner
CUST_2497_PI429285431	0.9034662	A	0.903819	A	0.999755487572736	0	lncRNA	2489-1_{1..1724}	"transcript_id ""ENST00000562904.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562904.1"" | genecode_v17"	chr6	 26686469	 26688192	+	ENSG00000261584.1	ENST00000562904.1	RP11-457M11.5	RP11-457M11.5-001	NA	NA	NA	inter
CUST_51251_PI429285431	5.5820203	P	5.095514	P	1.40104791896299	0	lncRNA	54861-3_{6001..6478}	hg19_lincRNAsTranscripts_TCONS_l2_00008476 range=chr15:28895664-28930415 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008476 range=chr15:28895664-28930415 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28901664	 28902141	+	NA	NA	NA	NA	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40"	NA	inter
CUST_3264_PI429285431	0.89132154	A	0.88862276	A	1.00187240250845	0	lncRNA	3242-1_{1..202}	"transcript_id ""ENST00000523264.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523264.1"" | genecode_v17"	chr8	111621470	111621671	+	ENSG00000253122.1	ENST00000523264.1	RP11-238I10.1	RP11-238I10.1-001	NA	NA	NA	inter
CUST_9754_PI429285431	4.7842665	P	4.924312	P	0.907490534250848	0	lncRNA	11271-1_{1..243}	lnc-ZNF74-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF74-1:6	chr22	 20855028	 20855270	+	lnc-ZNF74-1	lnc-ZNF74-1:6	XLOC_014159	linc-MED15	KLHL22	NA	chr22:20845028-20850170	inter
CUST_33669_PI429285431	0.9047104	A	1.121604	A	0.860416084697729	0	lncRNA	35231-1_{1..1609}	n340433|BC014585|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2894|NULL|-1.0030200|-0.2801778	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340433|BC014585|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2894|NULL|-1.0030200|-0.2801778	chr5	 38282365	 38283973	-	NA	NA	NA	NA	EGFLAM	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10chr5:38272365-38301088"	NA	inner
CUST_15993_PI429285431	0.901458	A	0.8972999	A	1.00288633275191	0	lncRNA	17690-1_{1..2687}	lnc-RP3-368B9.1.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,UCSC,"	>lnc-RP3-368B9.1.1-1:3	chr4	  3590661	  3593347	+	lnc-RP3-368B9.1.1-1	lnc-RP3-368B9.1.1-1:3	XLOC_003428	linc-ADRA2C-4	NA	NA	NA	inter
CUST_40437_PI429285431	5.3033094	P	4.9354157	P	1.29046740331631	0	lncRNA	41217-1_{1..3000}	n409329|NR_033684|lncRNA|Homosapiens||RefGeneNoncode|NR_033684||1.0555400|-0.3018298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409329|NR_033684|lncRNA|Homosapiens||RefGeneNoncode|NR_033684||1.0555400|-0.3018298	chr12	120884240	120887239	+	NA	NA	NA	NA	COX6A1	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SRSF9:range=chr12:120899822-1209074125'pad=0,hg19_refFlat_SRSF9:range=chr12:120899822-1209074125'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50chr12:120874240-120878532"	NA	inter
CUST_35890_PI429285431	2.9100595	A	2.560521	A	1.27415297660832	0	lncRNA	37275-1_{1..3000}	n344550|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_98|NULL|-1.3174600|-0.2409892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344550|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_98|NULL|-1.3174600|-0.2409892	chr6	 44042791	 44045790	+	NA	NA	NA	NA	MRPL14	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40chr6:44056862-44071228"	NA	inter
CUST_28234_PI429285431	0.9114184	A	0.89945257	A	1.00832857251171	0	lncRNA	29869-1_{1..217}	n325525|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000134073|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000134073|-1.2609200|-0.2697948	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325525|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000134073|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000134073|-1.2609200|-0.2697948	chr18	 59957666	 59957882	-	NA	NA	NA	NA	KIAA1468	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50chr18:59947666-59974355"	NA	inner
LNCA_21_P0010988	0.9273797	A	2.2418776	A	0.402065401524233	0	lncRNA	TCONS_l2_00004688	NA	NA	NA	NA	XLOC_l2_002423	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002423), lincRNA [TCONS_l2_00004688]"	chr11:82843561-82859757	hs|11q14.1	Agilent_HUMAN_G3V2	TCONS_l2_00004688	TCONS_l2_00004688	chr11	 82843561	 82859757	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_565_PI429285431	4.658942	P	4.614807	P	1.0310647960344	0	lncRNA	557-1_{1..1899}	"transcript_id ""ENST00000564287.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564287.1"" | genecode_v17"	chr1	212731175	212733073	+	ENSG00000260805.1	ENST00000564287.1	RP11-61J19.4	RP11-61J19.4-001	ATF3	NA	chr1:212738697-212743073	inter
CUST_15549_PI429285431	0.9225444	A	1.1369445	A	0.861904481462436	0	lncRNA	17234-2_{3001..3250}	lnc-RP1-177G6.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP1-177G6.2.1-1:1	chrX	139859568	139859817	+	lnc-RP1-177G6.2.1-1	lnc-RP1-177G6.2.1-1:1	XLOC_008079	linc-SPANXB1-2	CDR1	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40chrX:139865425-139866723"	NA	inter
CUST_17424_PI429285431	0.9345809	A	0.9006603	A	1.02379055365757	0	lncRNA	19148-1_{1..771}	lnc-MATN2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MATN2-2:1	chr8	 99059865	 99060635	+	lnc-MATN2-2	lnc-MATN2-2:1	XLOC_006878	linc-C8orf47	RPL30	"hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60chr8:99053938-99057818"	NA	inter
CUST_25340_PI429285431	1.1383555	A	1.4832551	A	0.787362768794272	0	lncRNA	26871-1_{1..919}	lnc-STAT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-STAT1-2:1	chr2	191746639	191747557	-	lnc-STAT1-2	lnc-STAT1-2:1	ENSG00000235852.1	AC005540.3	GLS	"hg19_refFlat_GLS:range=chr2:191745811-1918277125'pad=0,hg19_refFlat_GLS:range=chr2:191745811-1918277125'pad=0 3'pad=0 strand=+ repeatMasking=none,-113.40;hg19_refFlat_GLS:range=chr2:191745811-1917975885'pad=0,hg19_refFlat_GLS:range=chr2:191745811-1917975885'pad=0 3'pad=0 strand=+ repeatMasking=none,-113.40chr2:191745547-191756785"	NA	inner
CUST_50195_PI429285431	2.189212	A	1.2914354	A	1.86319232265308	0	lncRNA	53920-1_{1..832}	hg19_lincRNAsTranscripts_TCONS_l2_00028739 range=chr9:40308743-40324812 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028739 range=chr9:40308743-40324812 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 40308743	 40309574	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_267_PI429285431	0.9018531	A	0.8988326	A	1.0020958442766	0	lncRNA	259-1_{1..1059}	"transcript_id ""ENST00000436475.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436475.2"" | genecode_v17"	chr1	 63722693	 63723751	-	ENSG00000224209.2	ENST00000436475.2	LINC00466	LINC00466-002	FOXD3	NA	chr1:63788730-63790797	inter
CUST_40600_PI429285431	4.0651627	P	4.760915	P	0.617387295150648	0	lncRNA	41346-1_{1..1700}	n410072|NR_036511|lncRNA|Homosapiens||RefGeneNoncode|NR_036511||-1.0752400|-0.1889676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410072|NR_036511|lncRNA|Homosapiens||RefGeneNoncode|NR_036511||-1.0752400|-0.1889676	chr4	   773936	   775635	-	NA	NA	NA	NA	CPLX1	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50chr4:778745-785636"	NA	inter
CUST_28459_PI429285431	0.926331	A	0.9135013	A	1.00893252942799	0	lncRNA	30123-1_{1..580}	n325790|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044280|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044280|-0.9574820|-0.5049244	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325790|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044280|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044280|-0.9574820|-0.5049244	chr13	 26845484	 26846063	+	NA	NA	NA	NA	CDK8	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50chr13:26835484-26856503"	NA	inner
CUST_43714_PI429285431	4.3574038	P	4.426852	P	0.953002431394834	0	lncRNA	48461-1_{1..759}	"gi|310124617|ref|XR_110789.1| PREDICTED: Homo sapiens uncharacterized LOC100505650, transcript variant 3 (LOC100505650), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124617|ref|XR_110789.1| PREDICTED: Homo sapiens uncharacterized LOC100505650, transcript variant 3 (LOC100505650), misc_RNA"	NA	NA	NA	NA	NA	XR_110789.1	NA	NA	NA	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20"	NA	Unknown
CUST_13530_PI429285431	1.4672834	A	1.2311752	A	1.17781112037928	0	lncRNA	15170-1_{1..648}	lnc-C5orf49-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf49-2:5	chr5	  7369546	  7370193	-	lnc-C5orf49-2	lnc-C5orf49-2:5	XLOC_004727	linc-NSUN2-1	NA	NA	NA	inter
LNCA_21_P0011192	3.0252392	A	3.1372337	P	0.925307955591431	0	lncRNA	TCONS_l2_00007295	NA	NA	NA	NA	XLOC_l2_004072	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004072), lincRNA [TCONS_l2_00007295]"	chr13:97591795-97591736	hs|13q32.1	Agilent_HUMAN_G3V2	TCONS_l2_00007295	TCONS_l2_00007295	chr13	 97591736	 97591795	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11140_PI429285431	0.9078001	A	0.90319896	A	1.00319435834194	0	lncRNA	12697-1_{1..359}	lnc-RP11-167N24.6.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-167N24.6.1-1:1	chr12	 95776228	 95776586	-	lnc-RP11-167N24.6.1-1	lnc-RP11-167N24.6.1-1:1	XLOC_010163	linc-FGD6-3	NA	NA	NA	inter
CUST_27977_PI429285431	1.0270305	A	1.1000352	A	0.950656004185487	0	lncRNA	29582-1_{1..438}	n325227|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329775|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329775|-1.4182800|-0.2244678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325227|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329775|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329775|-1.4182800|-0.2244678	chr2	100590137	100590574	+	NA	NA	NA	NA	AFF3	NA	chr2:100580137-100602252	inner
CUST_15824_PI429285431	0.9171654	A	0.9092073	A	1.00553137646049	0	lncRNA	17513-1_{1..546}	lnc-P2RX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-P2RX2-1:1	chr12	133183463	133184008	+	lnc-P2RX2-1	lnc-P2RX2-1:1	XLOC_009964	linc-P2RX2	LOC100507055	NA	chr12:133179736-133187037	inner
CUST_7094_PI429285431	8.672169	P	8.690162	P	0.987605653326266	0	lncRNA	7029-1_{1..475}	"transcript_id ""ENST00000415215.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415215.1"" | genecode_v17"	chrX	 73164202	 73164676	+	ENSG00000225470.2	ENST00000415215.1	JPX	JPX-003	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40"	NA	inter
CUST_18111_PI429285431	2.6330478	A	3.102402	P	0.722287846329513	0	lncRNA	19846-1_{1..3000}	lnc-ARRDC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARRDC3-1:1	chr5	 90609897	 90612896	-	lnc-ARRDC3-1	lnc-ARRDC3-1:1	XLOC_004924	linc-LYSMD3-2	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80"	NA	inter
CUST_27190_PI429285431	0.9128115	A	0.90591455	A	1.00479204675327	0	lncRNA	28730-1_{1..1190}	n324319|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042967|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042967|-0.9644260|-0.2986967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324319|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042967|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042967|-0.9644260|-0.2986967	chr6	161156571	161157760	-	NA	NA	NA	NA	PLG	NA	chr6:161146571-161168373	inner
CUST_46565_PI429285431	5.417177	P	5.521925	P	0.929967368700441	0	lncRNA	50749-1_{1..605}	"gi|341915732|ref|XR_132599.1| PREDICTED: Homo sapiens uncharacterized LOC100128108, transcript variant 1 (LOC100128108), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|341915732|ref|XR_132599.1| PREDICTED: Homo sapiens uncharacterized LOC100128108, transcript variant 1 (LOC100128108), misc_RNA"	NA	NA	NA	NA	NA	XR_132599.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004668	0.9946113	A	0.92897815	A	1.04654413180396	0	lncRNA	ENST00000458201	XR_108617	XR_108617	NA	NA	XLOC_005383	NA	ENST00000458201	THC2705417	NA	"PREDICTED: Homo sapiens hypothetical LOC100507024 (LOC100507024), miscRNA [XR_108617]"	chr6:90631395-90631454	hs|6q15	Agilent_HUMAN_G3V2	ENST00000458201	ENST00000458201	chr6	 90631395	 90631454	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004880	0.9988903	A	2.9940848	A	0.250834118112674	0	lncRNA	TCONS_00011811	NA	NA	NA	NA	XLOC_005284	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005284), lincRNA [TCONS_00011811]"	chr6:40137117-40139165	hs|6p21.2	Agilent_HUMAN_G3V2	TCONS_00011811	TCONS_00011811	chr6	 40137117	 40139165	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009454	1.0005635	A	0.92979777	A	1.05027398290315	0	lncRNA	TCONS_00026277	NA	NA	NA	NA	XLOC_012625	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012625), lincRNA [TCONS_00026277]"	chr18:11186591-11186650	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_00026277	TCONS_00026277	chr18	 11186591	 11186650	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23_PI429285431	6.996487	P	7.063459	P	0.954639541719714	0	lncRNA	22-1_{1..523}	"transcript_id ""ENST00000521725.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521725.1"" | genecode_v17"	chr8	 41292817	 41293339	+	ENSG00000253396.1	ENST00000521725.1	RP11-15G16.1	RP11-15G16.1-001	NA	NA	NA	inter
CUST_22246_PI429285431	4.2494073	P	3.6161265	A	1.55108828051306	0	lncRNA	23847-1_{1..302}	lnc-ZNF205-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZNF205-1:1	chr16	  3159426	  3159727	+	lnc-ZNF205-1	lnc-ZNF205-1:1	ENSG00000263011.1	RP11-473M20.11	ZNF205	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10chr16:3162563-3169577"	NA	inter
CUST_52022_PI429285431	0.99712133	A	0.9209666	A	1.05420448135768	0	lncRNA	55553-1_{1..498}	hg19_lincRNAsTranscripts_TCONS_l2_00017144 range=chr21:15342220-15352308 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017144 range=chr21:15342220-15352308 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 15342220	 15342717	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10839_PI429285431	2.5959954	A	1.7800754	A	1.76042040598441	0	lncRNA	12375-1_{1..1773}	lnc-CHIC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHIC1-1:1	chrX	 73047121	 73048893	+	lnc-CHIC1-1	lnc-CHIC1-1:1	XLOC_008014	linc-ZCCHC13-3	NA	NA	NA	inter
CUST_29271_PI429285431	4.538013	P	3.2146053	P	2.50256527550847	0	lncRNA	31022-1_{1..252}	n332378|EF210211|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000503688|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000503688|0.8565400|-0.2031154	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332378|EF210211|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000503688|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000503688|0.8565400|-0.2031154	chr7	 55224299	 55224550	+	NA	NA	NA	NA	EGFR	NA	chr7:55214299-55248904	inner
CUST_16142_PI429285431	2.6257725	A	2.6901112	A	0.956383602559349	0	lncRNA	17847-2_{3001..4147}	lnc-WDR27-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR27-1:4	chr6	169833736	169834882	-	lnc-WDR27-1	lnc-WDR27-1:4	XLOC_005939	linc-THBS2-3	NA	NA	NA	inter
CUST_44956_PI429285431	1.6045396	A	0.91165304	A	1.61651462507273	0	lncRNA	49467-1_{1..2586}	"gi|237512952|ref|NR_027660.1| Homo sapiens zinc finger protein 138 (ZNF138), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237512952|ref|NR_027660.1| Homo sapiens zinc finger protein 138 (ZNF138), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_027660.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006374	4.669178	P	5.2141957	P	0.685382993676442	0	lncRNA	TCONS_00016727	NA	NA	NA	NA	XLOC_007617	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007617), lincRNA [TCONS_00016727]"	chr9:139736787-139736846	hs|9q34.3	Agilent_HUMAN_G3V2	TCONS_00016727	TCONS_00016727	chr9	139736787	139736846	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_777_PI429285431	7.532276	P	7.210272	P	1.25006576849866	0	lncRNA	769-1_{1..415}	"transcript_id ""ENST00000439745.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439745.1"" | genecode_v17"	chr2	 16408295	 16408709	-	ENSG00000231266.1	ENST00000439745.1	AC010745.3	AC010745.3-001	NA	NA	NA	inter
LNCA_21_P0006053	4.10737	P	4.0562177	P	1.03609213421622	0	lncRNA	ENST00000441473	NA	NA	NA	NA	XLOC_007566	NA	ENST00000441473	NA	NA	"BROAD Institute lincRNA (XLOC_007566), lincRNA [TCONS_00015752]"	chr9:128921833-128921892	hs|9q33.3	Agilent_HUMAN_G3V2	ENST00000441473	ENST00000441473	chr9	128921833	128921892	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35415_PI429285431	1.4526306	A	1.151119	A	1.23243503480253	0	lncRNA	36825-1_{1..1778}	n342477|BC047414|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4971|NULL|-0.9737660|-0.2364738	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342477|BC047414|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4971|NULL|-0.9737660|-0.2364738	chr16	 34430149	 34431926	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10041_PI429285431	1.0888367	A	0.9088775	A	1.13285184733377	0	lncRNA	11569-1_{1..204}	lnc-MUC20-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MUC20-1:1	chr3	195327681	195327884	+	lnc-MUC20-1	lnc-MUC20-1:1	XLOC_002993	linc-MUC20-5	NA	NA	NA	inter
CUST_11182_PI429285431	1.0616442	A	2.891934	A	0.281208128081991	0	lncRNA	12739-1_{1..447}	lnc-KLF6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KLF6-1:2	chr10	  3731613	  3732059	-	lnc-KLF6-1	lnc-KLF6-1:2	XLOC_008697	linc-PITRM1-1	NA	NA	NA	inter
CUST_12886_PI429285431	0.9129207	A	0.91945386	A	0.995481796496977	0	lncRNA	14514-1_{1..1499}	lnc-GALNT5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GALNT5-1:1	chr2	157906038	157907536	+	lnc-GALNT5-1	lnc-GALNT5-1:1	XLOC_001719	linc-GALNT5-1	NA	NA	NA	inter
CUST_31843_PI429285431	3.5007985	P	3.6109831	P	0.92646950792809	0	lncRNA	33577-1_{1..3000}	n338391|AK123435|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|787|NULL|-1.1443300|-0.3730624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338391|AK123435|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|787|NULL|-1.1443300|-0.3730624	chr1	179070802	179073801	-	NA	NA	NA	NA	ABL2	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10chr1:179068462-179084885"	NA	inner
CUST_36829_PI429285431	3.976613	P	4.064232	P	0.941074602221928	0	lncRNA	37996-2_{3001..6000}	n345304|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_853|NULL|-1.3761500|-0.3435426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n345304|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_853|NULL|-1.3761500|-0.3435426	chr15	 50651294	 50654293	+	NA	NA	NA	NA	GABPB1	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.52;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00chr15:50638294-50647605"	NA	inter
CUST_7706_PI429285431	3.2488475	A	2.6586611	A	1.50544124182066	0	lncRNA	9339-1_{1..389}	lnc-NBAS-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NBAS-4:1	chr2	 16082274	 16082662	-	lnc-NBAS-4	lnc-NBAS-4:1	ENSG00000233718	MYCNOS	MYCN	"hg19_refFlat_MYCN:range=chr2:16082187-160862195'pad=0,hg19_refFlat_MYCN:range=chr2:16082187-160862195'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.50chr2:16080683-16087129"	NA	inner
CUST_9000_PI429285431	0.92878073	A	1.1383818	A	0.864776323781528	0	lncRNA	10529-1_{1..490}	lnc-OSBPL6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OSBPL6-2:1	chr2	179295383	179295872	+	lnc-OSBPL6-2	lnc-OSBPL6-2:1	ENSG00000223960	AC009948.5	PRKRA	NA	chr2:179296141-179305551	inter
CUST_27175_PI429285431	1.4443293	A	0.9082271	A	1.45004955023139	0	lncRNA	28714-1_{1..455}	n324303|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043188|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043188|-0.9263380|-0.3432042	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324303|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043188|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043188|-0.9263380|-0.3432042	chr6	168368807	168369261	-	NA	NA	NA	NA	MLLT4	"hg19_refFlat_MLLT4:range=chr6:168227813-1683706155'pad=0,hg19_refFlat_MLLT4:range=chr6:168227813-1683706155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr6:168358807-168372700"	NA	inner
CUST_28968_PI429285431	9.529891	P	9.425403	P	1.0751127745144	0	lncRNA	30690-1_{1..866}	n326400|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000038921|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000038921|-0.9620150|-0.2832409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326400|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000038921|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000038921|-0.9620150|-0.2832409	chr1	144837899	144838764	-	NA	NA	NA	NA	PDE4DIP	NA	chr1:144851424-144880459	inner
CUST_38819_PI429285431	0.9005481	A	0.9007988	A	0.999826243099313	0	lncRNA	39813-1_{1..3000}	n384604|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jfw.2||1.0827400|-0.2088434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n384604|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jfw.2||1.0827400|-0.2088434	chr5	 17130136	 17133135	-	NA	NA	NA	NA	BASP1	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-61.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00chr5:17217750-17227531"	NA	inter
CUST_36520_PI429285431	0.9174916	A	0.9138906	A	1.00249914065597	0	lncRNA	37719-1_{1..336}	n345020|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_569|NULL|-1.5854600|-0.4700955	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345020|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_569|NULL|-1.5854600|-0.4700955	chr8	110243903	110244238	-	NA	NA	NA	NA	NUDCD1	NA	chr8:110253148-110254239	inter
CUST_43095_PI429285431	0.964185	A	0.9604701	A	1.00257829055003	0	lncRNA	47478-1_{1..131}	ENST00000410795 ncrna:snRNA chromosome:GRCh37:4:186947610:186947740:-1 gene:ENSG00000222727 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410795 ncrna:snRNA chromosome:GRCh37:4:186947610:186947740:-1 gene:ENSG00000222727 gene_biotype:snRNA transcript_biotype:snRNA	chr4	186947610	186947740	-	ENSG00000222727	ENST00000410795	NA	NA	NA	NA	NA	inter
CUST_29486_PI429285431	6.693288	P	6.654198	P	1.02746553401515	0	lncRNA	31244-1_{1..294}	n332910|AF086366|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067245|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067245|-0.9397920|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332910|AF086366|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067245|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067245|-0.9397920|-1.0000000	chr15	 41150090	 41150383	+	NA	NA	NA	NA	SPINT1	NA	chr15:41140090-41149853	inter
CUST_3371_PI429285431	3.4102225	P	3.628685	P	0.859480909192402	0	lncRNA	3346-1_{1..237}	"transcript_id ""ENST00000443359.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443359.1"" | genecode_v17"	chr9	 18360595	 18360831	-	ENSG00000227167.1	ENST00000443359.1	RP11-570H19.2	RP11-570H19.2-001	NA	NA	NA	inter
CUST_36342_PI429285431	4.2747984	P	3.0538378	P	2.3310187352807	0	lncRNA	37571-1_{1..2149}	n344868|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_417|NULL|-1.6046900|-0.2899497	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344868|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_417|NULL|-1.6046900|-0.2899497	chr6	  5021614	  5023762	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7622_PI429285431	2.984424	A	2.9808772	A	1.00246147889708	0	lncRNA	9254-1_{1..2043}	lnc-ELSPBP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ELSPBP1-1:1	chr19	 48602211	 48604253	+	lnc-ELSPBP1-1	lnc-ELSPBP1-1:1	ENSG00000250291	ENST00000503308	PLA2G4C	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PLA2G4C:range=chr19:48551600-486137725'pad=0,hg19_refFlat_PLA2G4C:range=chr19:48551600-486137725'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_PLA2G4C:range=chr19:48551600-486097865'pad=0,hg19_refFlat_PLA2G4C:range=chr19:48551600-486097865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_PLA2G4C:range=chr19:48556250-486097865'pad=0,hg19_refFlat_PLA2G4C:range=chr19:48556250-486097865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00chr19:48592211-48614109"	NA	inner
CUST_32051_PI429285431	0.9016065	A	2.9443018	A	0.242709872827012	0	lncRNA	33765-1_{1..1635}	n338614|CR600638|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1020|NULL|3.7889900|-0.2966969	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338614|CR600638|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1020|NULL|3.7889900|-0.2966969	chr13	 29069769	 29071403	+	NA	NA	NA	NA	FLT1	NA	chr13:29059769-29069265	inter
CUST_3987_PI429285431	6.2490296	P	6.2525573	P	0.997557771794892	0	lncRNA	3948-1_{1..2039}	"transcript_id ""ENST00000602427.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602427.1"" | genecode_v17"	chr11	 66303369	 66305407	-	ENSG00000269990.1	ENST00000602427.1	CTD-3074O7.12	CTD-3074O7.12-001	ACTN3	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10chr11:66314391-66315407"	NA	inter
CUST_60_PI429285431	4.222382	P	4.6373096	P	0.750057134457577	0	lncRNA	59-1_{1..1452}	"transcript_id ""ENST00000539813.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539813.1"" | genecode_v17"	chr16	 33961052	 33962503	-	ENSG00000256642.1	ENST00000539813.1	LINC00273	LINC00273-001	NA	NA	NA	inter
CUST_46402_PI429285431	0.9013247	A	1.5970938	A	0.61738010579609	0	lncRNA	50616-1_{1..408}	"gi|341915674|ref|XR_132757.1| PREDICTED: Homo sapiens esophagus cancer-related gene-2 interaction susceptibility protein (LOC100288160), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915674|ref|XR_132757.1| PREDICTED: Homo sapiens esophagus cancer-related gene-2 interaction susceptibility protein (LOC100288160), misc_RNA"	NA	NA	NA	NA	NA	XR_132757.1	NA	NA	NA	NA	NA	Unknown
CUST_30581_PI429285431	1.3835905	A	0.90601057	A	1.3924059943177	0	lncRNA	32363-1_{1..455}	n335833|X58082|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322170|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322170|2.6168500|-0.1108817	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335833|X58082|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322170|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322170|2.6168500|-0.1108817	chr2	 89157145	 89157599	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15011_PI429285431	1.0771484	A	1.0622447	A	1.01038400102947	0	lncRNA	16673-1_{1..853}	lnc-ALG2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALG2-3:1	chr9	102338998	102339850	-	lnc-ALG2-3	lnc-ALG2-3:1	XLOC_007807	linc-ALG2-1	NA	NA	NA	inter
CUST_18273_PI429285431	0.91110015	A	1.2605523	A	0.784882092974701	0	lncRNA	20005-1_{1..2551}	lnc-MEP1A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MEP1A-1:2	chr6	 46723816	 46726366	+	lnc-MEP1A-1	lnc-MEP1A-1:2	ENSG00000230062	RP11-268F1.2	LOC100287718	NA	chr6:46714654-46726955	inner
LNCA_21_P0002694	3.1115599	P	2.9212968	A	1.14097177252223	0	lncRNA	TCONS_00005365	NA	NA	NA	NA	XLOC_002552	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002552), lincRNA [TCONS_00005365]"	chr2:242492158-242492099	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_00005365	TCONS_00005365	chr2	242492099	242492158	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24202_PI429285431	7.2228317	P	7.312641	P	0.939646946515	0	lncRNA	25753-1_{1..471}	lnc-TAF4B-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TAF4B-4:2	chr18	 24512957	 24513427	+	lnc-TAF4B-4	lnc-TAF4B-4:2	ENSG00000260372.2	CHST9-AS1	CHST9	NA	chr18:24502957-24523049	inner
LNCA_21_P0005530	4.348951	P	4.4885178	P	0.907791698243269	0	lncRNA	TCONS_00013950	NA	NA	NA	NA	XLOC_006599	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006599), lincRNA [TCONS_00013950]"	chr7:127921902-127921843	hs|7q32.1	Agilent_HUMAN_G3V2	TCONS_00013950	TCONS_00013950	chr7	127921843	127921902	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003482	1.4567714	A	0.91984695	A	1.45087622741835	0	lncRNA	ENST00000510169	NA	NA	NA	NA	XLOC_004002	NA	ENST00000510169	NA	NA	"BROAD Institute lincRNA (XLOC_004002), lincRNA [TCONS_00007787]"	chr4:84589725-84589666	hs|4q21.23	Agilent_HUMAN_G3V2	ENST00000510169	ENST00000510169	chr4	 84589666	 84589725	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4936_PI429285431	7.6259127	P	7.755307	P	0.914215193087111	0	lncRNA	4880-1_{1..487}	"transcript_id ""ENST00000556168.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556168.1"" | genecode_v17"	chr14	 88192299	 88192785	-	ENSG00000258807.1	ENST00000556168.1	RP11-1152H15.1	RP11-1152H15.1-002	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	inter
CUST_51275_PI429285431	8.785013	P	9.828973	P	0.484994401884546	0	lncRNA	54881-1_{1..881}	hg19_lincRNAsTranscripts_TCONS_l2_00008516 range=chr15:30336704-30337753 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008516 range=chr15:30336704-30337753 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 30336704	 30337584	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28541_PI429285431	0.9145086	A	1.548769	A	0.644271016711211	0	lncRNA	30213-1_{1..683}	n325890|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050229|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050229|-1.2559200|-0.4106728	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325890|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050229|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050229|-1.2559200|-0.4106728	chr10	107934132	107934814	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37907_PI429285431	7.3425627	P	7.289484	P	1.03747653007542	0	lncRNA	38996-1_{1..235}	n346446|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1996|NULL|-1.5220500|-0.4026865	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346446|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1996|NULL|-1.5220500|-0.4026865	chr14	 19856963	 19857197	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19044_PI429285431	5.9114313	P	6.7640715	P	0.553770382229603	0	lncRNA	20734-1_{1..700}	lnc-VAMP1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-VAMP1-1:4	chr12	  6560635	  6561334	-	lnc-VAMP1-1	lnc-VAMP1-1:4	ENSG00000215039	AC005840.1	TAPBPL	NA	chr12:6561177-6570681	inter
LNCA_21_P0005597	0.9262867	A	0.9119009	A	1.01002135754131	0	lncRNA	TCONS_00014261	NA	NA	NA	NA	XLOC_006364	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006364), lincRNA [TCONS_00014261]"	chr7:19039651-19039592	hs|7p21.1	Agilent_HUMAN_G3V2	TCONS_00014261	TCONS_00014261	chr7	 19039592	 19039651	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22884_PI429285431	4.091523	P	4.1462364	P	0.962785687241331	0	lncRNA	24461-1_{1..380}	lnc-OCA2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OCA2-3:1	chr15	 27665828	 27666207	-	lnc-OCA2-3	lnc-OCA2-3:1	ENSG00000258970.1	RP11-100M12.1	GABRG3	NA	chr15:27655828-27675881	inner
LNCA_21_P0008860	0.9256018	A	0.9109155	A	1.01023175753635	0	lncRNA	THC2712170	NA	NA	NA	NA	XLOC_011544	NA	NA	THC2712170	NA	"BROAD Institute lincRNA (XLOC_011544), lincRNA [TCONS_00024183]"	chr15:080631622-080631563	hs|15q25.1	Agilent_HUMAN_G3V2	THC2712170	THC2712170	chr15	 80631563	 80631622	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24438_PI429285431	0.89647555	A	0.8932738	A	1.00222174841882	0	lncRNA	25991-1_{1..1707}	lnc-MRC2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-MRC2-2:1	chr17	 60628964	 60630670	+	lnc-MRC2-2	lnc-MRC2-2:1	ENSG00000264546.1	RP11-464D20.6	TLK2	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr17:60618964-60639482"	NA	inner
CUST_40438_PI429285431	7.2253637	P	6.321886	P	1.87056966928149	0	lncRNA	41217-2_{3001..4346}	n409329|NR_033684|lncRNA|Homosapiens||RefGeneNoncode|NR_033684||1.0555400|-0.3018298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409329|NR_033684|lncRNA|Homosapiens||RefGeneNoncode|NR_033684||1.0555400|-0.3018298	chr12	120887240	120888585	+	NA	NA	NA	NA	COX6A1	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SRSF9:range=chr12:120899822-1209074125'pad=0,hg19_refFlat_SRSF9:range=chr12:120899822-1209074125'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50chr12:120874240-120878532"	NA	inter
CUST_35944_PI429285431	0.9150958	A	0.9145086	A	1.00040709886669	0	lncRNA	37306-1_{1..3000}	n344581|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_129|NULL|-1.4169800|-0.3011090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344581|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_129|NULL|-1.4169800|-0.3011090	chr6	 14286249	 14289248	-	NA	NA	NA	NA	NA	"hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_16654_PI429285431	0.8987738	A	2.6430838	A	0.298476654519613	0	lncRNA	18356-1_{1..570}	lnc-MAP3K13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP3K13-1:1	chr3	184898291	184898860	+	lnc-MAP3K13-1	lnc-MAP3K13-1:1	XLOC_002954	linc-MAP3K13	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90"	NA	inter
LNCA_21_P0004250	1.311782	A	0.9064669	A	1.32437813713414	0	lncRNA	TCONS_00009958	NA	NA	NA	NA	XLOC_004380	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004380), lincRNA [TCONS_00009958]"	chr5:51283561-51283620	hs|5q11.2	Agilent_HUMAN_G3V2	TCONS_00009958	TCONS_00009958	chr5	 51283561	 51283620	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23260_PI429285431	4.695564	P	4.9278784	P	0.851268174513406	0	lncRNA	24832-1_{1..496}	lnc-NKX2-5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKX2-5-2:1	chr5	172571963	172572458	-	lnc-NKX2-5-2	lnc-NKX2-5-2:1	ENSG00000253172.1	CTC-209H22.3	C5orf41	"hg19_refFlat_BNIP1:range=chr5:172571549-1725909245'pad=0,hg19_refFlat_BNIP1:range=chr5:172571549-1725909245'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90chr5:172561963-172566291"	NA	inner
CUST_15454_PI429285431	0.9169251	A	1.7732252	A	0.552367330604231	0	lncRNA	17142-1_{1..2659}	lnc-MGAT1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MGAT1-2:4	chr5	180257708	180260366	-	lnc-MGAT1-2	lnc-MGAT1-2:4	XLOC_005110	linc-MGAT1-2	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10"	NA	inter
CUST_25308_PI429285431	10.458615	P	10.354562	P	1.07478865642677	0	lncRNA	26838-1_{1..2083}	lnc-ACHE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACHE-1:1	chr7	100611326	100613408	-	lnc-ACHE-1	lnc-ACHE-1:1	ENSG00000225946.1	RP11-395B7.2	MUC12	NA	chr7:100612904-100621410	inter
CUST_14919_PI429285431	0.8991889	A	0.89310396	A	1.00422666626888	0	lncRNA	16581-1_{1..630}	lnc-VAX1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VAX1-1:5	chr10	118928371	118929000	-	lnc-VAX1-1	lnc-VAX1-1:5	XLOC_008959	linc-VAX1-2	NA	NA	NA	inter
CUST_15683_PI429285431	0.91793287	A	0.91444373	A	1.00242141445368	0	lncRNA	17370-1_{1..369}	lnc-ACTBL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACTBL2-1:1	chr5	 56595052	 56595420	-	lnc-ACTBL2-1	lnc-ACTBL2-1:1	XLOC_004834	linc-MIER3	NA	NA	NA	inter
CUST_18062_PI429285431	3.471034	P	3.5176373	P	0.968213221322864	0	lncRNA	19797-1_{1..419}	lnc-WDR7-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR7-9:1	chr18	 53462319	 53462737	+	lnc-WDR7-9	lnc-WDR7-9:1	XLOC_012682	linc-WDR7-6	NA	NA	NA	inter
CUST_37165_PI429285431	5.4026413	P	5.469018	P	0.955033536408494	0	lncRNA	38282-1_{1..1147}	n345601|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1150|NULL|-1.5553200|-0.2348305	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345601|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1150|NULL|-1.5553200|-0.2348305	chr3	156465139	156466285	+	NA	NA	NA	NA	NA	"hg19_refFlat_PA2G4:range=chr12:56498522-565066725'pad=0,hg19_refFlat_PA2G4:range=chr12:56498522-565066725'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40"	NA	inter
CUST_17556_PI429285431	1.4713593	A	1.6671444	A	0.873097635739839	0	lncRNA	19284-1_{1..401}	lnc-RTKN2-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RTKN2-3:3	chr10	 63554109	 63554509	-	lnc-RTKN2-3	lnc-RTKN2-3:3	XLOC_008833	linc-TMEM26-1	NA	NA	NA	inter
CUST_49902_PI429285431	11.358769	P	11.703644	P	0.787376194562504	0	lncRNA	53651-1_{1..660}	hg19_lincRNAsTranscripts_TCONS_l2_00026732 range=chr7:84477153-84509872 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026732 range=chr7:84477153-84509872 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 84477153	 84477812	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4668_PI429285431	0.92094827	A	0.9142796	A	1.00463306943944	0	lncRNA	4614-1_{1..307}	"transcript_id ""ENST00000448425.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448425.1"" | genecode_v17"	chr13	 89194540	 89194846	+	ENSG00000229443.1	ENST00000448425.1	LINC00433	LINC00433-002	NA	NA	NA	inter
CUST_9288_PI429285431	1.3198444	A	1.6557629	A	0.792279566718149	0	lncRNA	10794-1_{1..788}	lnc-RP1L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP1L1-1:1	chr8	 10438163	 10438950	-	lnc-RP1L1-1	lnc-RP1L1-1:1	XLOC_007004	linc-PPP1R3B-1	NA	NA	NA	inter
CUST_14861_PI429285431	3.2051504	P	3.2077763	P	0.998181520260079	0	lncRNA	16524-1_{1..1355}	lnc-CSNK1A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CSNK1A1-1:1	chr5	149020562	149021916	-	lnc-CSNK1A1-1	lnc-CSNK1A1-1:1	XLOC_005050	linc-CSNK1A1	ARHGEF37	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60chr5:149010562-149014527"	NA	inter
LNCA_21_P0009529	0.9178945	A	0.90298057	A	1.0103911655824	0	lncRNA	TCONS_00026422	NA	NA	NA	NA	XLOC_012768	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012768), lincRNA [TCONS_00026422]"	chr18:11376060-11376001	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_00026422	TCONS_00026422	chr18	 11376001	 11376060	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17345_PI429285431	0.913455	A	0.89561206	A	1.01244458086652	0	lncRNA	19063-1_{1..474}	lnc-KLHL25-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-KLHL25-7:2	chr15	 86622995	 86623468	-	lnc-KLHL25-7	lnc-KLHL25-7:2	XLOC_011564	linc-KLHL25-4	NA	NA	NA	inter
CUST_29761_PI429285431	6.4515615	P	6.2720356	P	1.13251165693621	0	lncRNA	31523-1_{1..795}	n333449|BC019867|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000089980|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000089980|-0.8090740|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333449|BC019867|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000089980|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000089980|-0.8090740|-1.0000000	chr6	 43737961	 43738755	+	NA	NA	NA	NA	VEGFA	NA	chr6:43737946-43748756	inner
CUST_49696_PI429285431	0.90781134	A	0.9158844	A	0.994419808653392	0	lncRNA	53473-1_{1..847}	hg19_lincRNAsTranscripts_TCONS_l2_00025652 range=chr7:9775337-9809237 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025652 range=chr7:9775337-9809237 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  9775337	  9776183	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20155_PI429285431	0.8984811	A	0.89257133	A	1.00410474188349	0	lncRNA	21800-1_{1..396}	lnc-ZNF236-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF236-1:4	chr18	 74695683	 74696078	+	lnc-ZNF236-1	lnc-ZNF236-1:4	ENSG00000266844.1	RP11-862L9.3	MBP	NA	chr18:74690789-74705709	inner
CUST_24101_PI429285431	3.9259996	P	2.9975066	A	1.90328683569606	0	lncRNA	25652-1_{1..2226}	lnc-GLUD1-4:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLUD1-4:12	chr10	 89067714	 89069939	-	lnc-GLUD1-4	lnc-GLUD1-4:12	ENSG00000223482.1	RP11-322M19.1	NA	NA	NA	inter
CUST_10527_PI429285431	1.8246342	A	2.6407988	A	0.567949830149961	0	lncRNA	12055-1_{1..366}	lnc-MEF2D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MEF2D-1:1	chr1	156477944	156478309	-	lnc-MEF2D-1	lnc-MEF2D-1:1	XLOC_001045	linc-MEF2D	MEF2D	NA	chr1:156467944-156470529	inter
CUST_67_PI429285431	1.0950756	A	0.89166796	A	1.15141478281677	0	lncRNA	65-2_{3001..6000}	"transcript_id ""ENST00000488188.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000488188.2"" | genecode_v17"	chr17	 37916974	 37919973	-	ENSG00000264198.1	ENST00000488188.2	RP11-94L15.2	RP11-94L15.2-001	IKZF3	"hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_IKZF3:range=chr17:37922043-380203795'pad=0,hg19_refFlat_IKZF3:range=chr17:37922043-380203795'pad=0 3'pad=0 strand=- repeatMasking=none,-99.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60chr17:37921198-37930089"	NA	inter
CUST_40642_PI429285431	2.0568304	A	1.397052	A	1.5798399394384	0	lncRNA	41381-1_{1..2840}	n410161|NR_036636|lncRNA|Homosapiens||RefGeneNoncode|NR_036636||5.7459900|-0.2888144	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410161|NR_036636|lncRNA|Homosapiens||RefGeneNoncode|NR_036636||5.7459900|-0.2888144	chr12	112336866	112339705	+	NA	NA	NA	NA	MAPKAPK5	NA	chr12:112326866-112331228	inter
CUST_10832_PI429285431	0.91505945	A	0.90665436	A	1.00584296837206	0	lncRNA	12368-1_{1..306}	lnc-MTERF-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTERF-3:2	chr7	 91010060	 91010365	-	lnc-MTERF-3	lnc-MTERF-3:2	XLOC_006521	linc-MGC26647-2	NA	NA	NA	inter
CUST_30874_PI429285431	5.3269515	P	5.32925	P	0.998408069672953	0	lncRNA	32662-1_{1..222}	n336882|AY736017|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332226|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332226|0.8311080|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336882|AY736017|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332226|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332226|0.8311080|-1.0000000	chrX	 24381608	 24381829	+	NA	NA	NA	NA	FAM48B1	NA	chrX:24380878-24383541	inner
CUST_20629_PI429285431	5.775501	P	5.993727	P	0.859621814852228	0	lncRNA	22268-1_{1..498}	lnc-ZC3H3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZC3H3-1:1	chr8	144631826	144632323	-	lnc-ZC3H3-1	lnc-ZC3H3-1:1	ENSG00000254859.1	RP11-661A12.5	ZC3H3	NA	chr8:144621826-144623620	inter
CUST_49999_PI429285431	0.9140487	A	1.0004876	A	0.941844700157342	0	lncRNA	53736-1_{1..344}	hg19_lincRNAsTranscripts_TCONS_l2_00027548 range=chr8:833649-952276 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027548 range=chr8:833649-952276 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	   833649	   833992	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011547	4.2536063	P	4.2798314	P	0.98198636650036	0	lncRNA	TCONS_l2_00010847	NA	NA	NA	NA	XLOC_l2_005814	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005814), lincRNA [TCONS_l2_00010847]"	chr17:46821170-46821229	hs|17q21.32	Agilent_HUMAN_G3V2	TCONS_l2_00010847	TCONS_l2_00010847	chr17	 46821170	 46821229	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37812_PI429285431	0.9689444	A	1.3066983	A	0.791272267683191	0	lncRNA	38903-1_{1..1791}	n346325|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1875|NULL|-1.5234700|-0.2522000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346325|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1875|NULL|-1.5234700|-0.2522000	chr12	 92860391	 92862181	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13661_PI429285431	2.5217853	A	2.5756235	A	0.963369931068914	0	lncRNA	15299-1_{1..555}	lnc-EIF2B5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2B5-2:2	chr3	184445188	184445742	+	lnc-EIF2B5-2	lnc-EIF2B5-2:2	XLOC_002952	linc-VPS8-2	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40"	NA	inter
CUST_35230_PI429285431	1.4850168	A	1.059746	A	1.34282453300652	0	lncRNA	36631-1_{1..1126}	n342223|BC033316|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4713|NULL|-1.2468100|-0.2599198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342223|BC033316|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4713|NULL|-1.2468100|-0.2599198	chr1	 16841137	 16842262	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45603_PI429285431	1.0397301	A	0.9742334	A	1.04644515441103	0	lncRNA	49991-1_{1..554}	"gi|333108237|ref|NR_038200.1| Homo sapiens uncharacterized LOC100507027 (M1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|333108237|ref|NR_038200.1| Homo sapiens uncharacterized LOC100507027 (M1), transcript variant 1, non-coding RNA"	Chr10	 61496748	 61497301	-	100507027	NR_038200.1	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
CUST_19344_PI429285431	8.202963	P	8.076779	P	1.09140306472293	0	lncRNA	21010-1_{1..975}	lnc-TM4SF4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TM4SF4-2:1	chr3	149375427	149376401	+	lnc-TM4SF4-2	lnc-TM4SF4-2:1	ENSG00000241313.2	WWTR1-AS1	WWTR1	"hg19_refFlat_WWTR1:range=chr3:149238592-1493750935'pad=0,hg19_refFlat_WWTR1:range=chr3:149238592-1493750935'pad=0 3'pad=0 strand=- repeatMasking=none,-108.90chr3:149365427-149386098"	NA	inner
CUST_9385_PI429285431	0.92181146	A	0.9219253	A	0.99992109523811	0	lncRNA	10889-1_{1..487}	lnc-RP11-171N4.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-171N4.2.1-1:1	chr4	157563417	157563903	-	lnc-RP11-171N4.2.1-1	lnc-RP11-171N4.2.1-1:1	XLOC_004135	linc-CTSO-2	NA	NA	NA	inter
CUST_33824_PI429285431	0.90910196	A	0.90208095	A	1.00487845438453	0	lncRNA	35372-1_{1..1363}	n340610|BC029435|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3072|NULL|-1.2450500|-0.4047698	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340610|BC029435|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3072|NULL|-1.2450500|-0.4047698	chr5	127338040	127339402	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38405_PI429285431	4.142186	P	4.0491476	P	1.06661417036517	0	lncRNA	39437-2_{3001..6000}	n382350|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yxy.2||-0.8366460|-0.3167362	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n382350|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yxy.2||-0.8366460|-0.3167362	chr15	 25329237	 25332236	+	NA	NA	NA	NA	SNRPN	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20chr15:25316237-25369068"	NA	inter
CUST_21717_PI429285431	10.556059	P	10.481052	P	1.05336614690686	0	lncRNA	23327-1_{1..460}	lnc-DEFB116-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DEFB116-1:1	chr20	 29596333	 29596792	-	lnc-DEFB116-1	lnc-DEFB116-1:1	ENSG00000231934.1	RP4-610C12.1	NA	NA	NA	inter
LNCA_19_P00322332	4.2980914	P	4.4165	P	0.921203246122501	0	lncRNA	XR_111691	XR_111691	XR_111691	NA	NA	LOC100508196	uncharacterized LOC100508196	NA	THC2608833	NA	"PREDICTED: Homo sapiens hypothetical LOC100508196 (LOC100508196), miscRNA [XR_111691]"	chr17:38683195-38683252	hs|17q21.2	Agilent_HUMAN_G3V2	XR_111691	XR_111691	chr17	 38683195	 38683252	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21551_PI429285431	0.928466	A	1.2898126	A	0.778437652986893	0	lncRNA	23167-1_{1..490}	lnc-RFC4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RFC4-4:1	chr3	186463866	186464355	-	lnc-RFC4-4	lnc-RFC4-4:1	ENSG00000197099.2	RP11-573D15.8	KNG1	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_KNG1:range=chr3:186435332-1864615745'pad=0,hg19_refFlat_KNG1:range=chr3:186435332-1864615745'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10chr3:186453866-186462199"	NA	inter
CUST_5657_PI429285431	10.64661	P	10.947913	P	0.811519124913406	0	lncRNA	5583-1_{1..674}	"transcript_id ""ENST00000562180.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562180.1"" | genecode_v17"	chr16	 81772908	 81773581	+	ENSG00000261218.1	ENST00000562180.1	RP11-960L18.1	RP11-960L18.1-007	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_39097_PI429285431	5.5312567	P	5.923541	P	0.761922254647062	0	lncRNA	40073-1_{1..818}	n385649|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azr.1||-1.0261900|-0.1594254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385649|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azr.1||-1.0261900|-0.1594254	chr9	102121666	102122483	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3133_PI429285431	3.9318745	P	4.282597	P	0.784191277462465	0	lncRNA	3112-1_{1..430}	"transcript_id ""ENST00000529518.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000529518.1"" | genecode_v17"	chr8	 61565061	 61565490	-	ENSG00000254869.1	ENST00000529518.1	RP11-91I20.2	RP11-91I20.2-001	NA	NA	NA	inter
CUST_3087_PI429285431	1.0886514	A	5.4854884	P	0.0474701033179628	0	lncRNA	3066-1_{1..881}	"transcript_id ""ENST00000521363.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521363.1"" | genecode_v17"	chr8	 40156260	 40157140	-	ENSG00000253802.1	ENST00000521363.1	CTA-392C11.1	CTA-392C11.1-003	NA	NA	NA	inter
CUST_28320_PI429285431	0.9097036	A	1.211354	A	0.81132373517722	0	lncRNA	29965-1_{1..545}	n325625|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045818|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045818|-1.4077200|-0.4307549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325625|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045818|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045818|-1.4077200|-0.4307549	chr13	111809433	111809977	+	NA	NA	NA	NA	ARHGEF7	NA	chr13:111799433-111820330	inner
CUST_6084_PI429285431	3.4198043	P	3.6252494	P	0.867271075564943	0	lncRNA	6009-1_{1..810}	"transcript_id ""ENST00000592198.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592198.1"" | genecode_v17"	chr18	 11366912	 11367721	-	ENSG00000267051.1	ENST00000592198.1	RP11-128P17.2	RP11-128P17.2-001	NA	NA	NA	inter
CUST_46456_PI429285431	7.861117	P	8.279996	P	0.748005612386149	0	lncRNA	50659-3_{6001..7008}	"gi|388454182|ref|NR_049762.1| Homo sapiens mitogen-activated protein kinase binding protein 1 (MAPKBP1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388454182|ref|NR_049762.1| Homo sapiens mitogen-activated protein kinase binding protein 1 (MAPKBP1), transcript variant 5, non-coding RNA"	Chr15	 42072632	 42073639	+	23005	NR_049762.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.71"	NA	inter
CUST_7376_PI429285431	3.3107846	P	3.1296544	P	1.13377172852362	0	lncRNA	9023-1_{1..240}	lnc-WDR74-1:23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR74-1:23	chr11	 62622605	 62622844	-	lnc-WDR74-1	lnc-WDR74-1:23	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62632646	inter
CUST_38054_PI429285431	1.5801058	A	0.90176094	A	1.60030274529544	0	lncRNA	39131-2_{3001..3567}	n377625|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030013||-0.0349141|-0.2661912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377625|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030013||-0.0349141|-0.2661912	chr6	  4278022	  4278588	+	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90"	NA	inter
CUST_30055_PI429285431	5.423	P	4.509511	P	1.88359526357181	0	lncRNA	31824-1_{1..348}	n334562|U59479|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220590|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220590|-1.1494400|-0.7424988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334562|U59479|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220590|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220590|-1.1494400|-0.7424988	chr14	 39650766	 39651113	+	NA	NA	NA	NA	PNN	NA	chr14:39644387-39652422	inner
LNCA_21_P0010880	0.98785394	A	0.92799985	A	1.04236033420325	0	lncRNA	TCONS_l2_00003560	NA	NA	NA	NA	XLOC_l2_001972	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001972), lincRNA [TCONS_l2_00003560]"	chr10:49272389-49272330	hs|10q11.22	Agilent_HUMAN_G3V2	TCONS_l2_00003560	TCONS_l2_00003560	chr10	 49272330	 49272389	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41647_PI429285431	0.93620044	A	0.92090744	A	1.01065668205729	0	lncRNA	43053-1_{1..84}	ENST00000582405 ncrna:miRNA chromosome:GRCh37:5:14826038:14826121:-1 gene:ENSG00000264792 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582405 ncrna:miRNA chromosome:GRCh37:5:14826038:14826121:-1 gene:ENSG00000264792 gene_biotype:miRNA transcript_biotype:miRNA	chr5	 14826038	 14826121	-	ENSG00000264792	ENST00000582405	NA	NA	ANKH	NA	chr5:14816038-14836121	inner
CUST_43177_PI429285431	2.931604	A	3.4152293	P	0.715178216756103	0	lncRNA	47991-1_{1..672}	ENST00000589244 havana:sense_intronic chromosome:GRCh37:17:59460146:59460916:1 gene:ENSG00000266934 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000589244 havana:sense_intronic chromosome:GRCh37:17:59460146:59460916:1 gene:ENSG00000266934 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr17	 59460146	 59460817	+	ENSG00000266934	ENST00000589244	NA	NA	BCAS3	NA	chr17:59450146-59470199	inner
CUST_39457_PI429285431	0.92431337	A	0.9263196	A	0.998610353785702	0	lncRNA	40401-1_{1..1820}	n386963|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vgd.1||1.6257400|-0.2488745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386963|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vgd.1||1.6257400|-0.2488745	chr16	 34711784	 34713603	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27988_PI429285431	1.0681381	A	0.91556627	A	1.11154921761525	0	lncRNA	29596-1_{1..1103}	n325241|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328255|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328255|0.0406642|-0.3605755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325241|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328255|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328255|0.0406642|-0.3605755	chr2	 78169363	 78170465	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22421_PI429285431	1.3376021	A	1.0777751	A	1.19733511821324	0	lncRNA	24010-1_{1..452}	lnc-COQ10B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COQ10B-1:1	chr2	198177228	198177679	+	lnc-COQ10B-1	lnc-COQ10B-1:1	ENSG00000225979.1	AC010746.3	ANKRD44	NA	chr2:198167228-198175521	inter
CUST_26240_PI429285431	3.4193213	A	3.6221817	P	0.868826251618834	0	lncRNA	27747-1_{1..366}	lnc-SNTB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNTB2-1:1	chr16	 69264830	 69265195	+	lnc-SNTB2-1	lnc-SNTB2-1:1	ENSG00000260499.2	RP11-70O5.1	SNTB2	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-96.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20chr16:69254830-69275033"	NA	inner
CUST_21582_PI429285431	1.9839246	A	1.8425113	A	1.10298509847946	0	lncRNA	23196-1_{1..951}	lnc-SAP30-5:21	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:21	chr4	174512224	174513174	+	lnc-SAP30-5	lnc-SAP30-5:21	ENSG00000237125.3	RP11-471J12.1	NA	NA	NA	inter
CUST_44673_PI429285431	4.5766373	P	4.726619	P	0.901261894679009	0	lncRNA	49233-2_{3001..4990}	"gi|402693482|ref|NR_073131.1| Homo sapiens neural precursor cell expressed, developmentally down-regulated 9 (NEDD9), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402693482|ref|NR_073131.1| Homo sapiens neural precursor cell expressed, developmentally down-regulated 9 (NEDD9), transcript variant 5, non-coding RNA"	Chr6	 11186531	 11188520	-	4739	NR_073131.1	NA	NA	NA	NA	NA	inter
CUST_14052_PI429285431	3.8854964	P	4.3294525	P	0.735116036818594	0	lncRNA	15698-1_{1..384}	lnc-AC069257.9.1-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC069257.9.1-6:2	chr3	195365480	195365863	+	lnc-AC069257.9.1-6	lnc-AC069257.9.1-6:2	XLOC_002995	linc-MUC20-3	NA	NA	NA	inter
CUST_14332_PI429285431	4.6937776	P	2.3395133	A	5.11333412368564	0	lncRNA	15988-3_{6001..6335}	lnc-HMBOX1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HMBOX1-1:2	chr8	 28927693	 28928027	+	lnc-HMBOX1-1	lnc-HMBOX1-1:2	XLOC_006753	linc-LEPROTL1-6	KIF13B	NA	chr8:28924795-28932445	inter
CUST_26078_PI429285431	0.95260704	A	1.1939614	A	0.845950785572783	0	lncRNA	27591-1_{1..381}	lnc-DROSHA-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DROSHA-5:1	chr5	 31267593	 31267973	-	lnc-DROSHA-5	lnc-DROSHA-5:1	ENSG00000254138.1	RP11-152K4.2	CDH6	"hg19_refFlat_CDH6:range=chr5:31267581-313234155'pad=0,hg19_refFlat_CDH6:range=chr5:31267581-313234155'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40chr5:31257593-31277717"	NA	inner
CUST_33186_PI429285431	3.0463223	A	0.9108479	A	4.39381583179065	0	lncRNA	34777-1_{1..1719}	n339875|BC029598|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2323|NULL|-1.2155800|-0.3400966	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339875|BC029598|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2323|NULL|-1.2155800|-0.3400966	chr4	 17173379	 17175097	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34935_PI429285431	1.2770256	A	1.5436244	A	0.831276999813714	0	lncRNA	36353-1_{1..1961}	n341852|AK097717|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4332|NULL|-0.6392980|-0.1860179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341852|AK097717|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4332|NULL|-0.6392980|-0.1860179	chr6	 43112730	 43114690	-	NA	NA	NA	NA	PTK7	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PTK7:range=chr6:43044622-431286195'pad=0,hg19_refFlat_PTK7:range=chr6:43044622-431286195'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.50;hg19_refFlat_PTK7:range=chr6:43044227-431286195'pad=0,hg19_refFlat_PTK7:range=chr6:43044227-431286195'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.50chr6:43102730-43125192"	NA	inner
LNCA_21_P0012408	1.0110662	A	0.92916244	A	1.0584137873402	0	lncRNA	ENST00000492731	NA	NA	NA	NA	XLOC_l2_009946	NA	ENST00000492731	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009946), lincRNA [TCONS_l2_00018933]"	chr3:151360563-151360622	hs|3q25.1	Agilent_HUMAN_G3V2	ENST00000492731	ENST00000492731	chr3	151360563	151360622	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31381_PI429285431	0.90770507	A	0.90099245	A	1.00466367486519	0	lncRNA	33159-1_{1..1914}	n337847|BC040595|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|230|NULL|-1.1295700|-0.2231527	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337847|BC040595|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|230|NULL|-1.1295700|-0.2231527	chrX	126794611	126796524	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40"	NA	inter
CUST_27202_PI429285431	0.9518039	A	1.1555386	A	0.86829988627729	0	lncRNA	28744-1_{1..438}	n324334|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042775|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042775|-1.0933000|-0.4466464	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324334|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042775|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042775|-1.0933000|-0.4466464	chr6	153667422	153667859	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27947_PI429285431	0.914088	A	0.9186464	A	0.996845344308115	0	lncRNA	29551-1_{1..860}	n325194|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330102|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330102|-1.2457100|-0.4200564	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325194|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330102|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330102|-1.2457100|-0.4200564	chr2	107237578	107238437	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18097_PI429285431	2.010887	A	2.7322001	A	0.606545130757003	0	lncRNA	19832-1_{1..1141}	lnc-RASA1-3:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASA1-3:17	chr5	 87583253	 87584393	+	lnc-RASA1-3	lnc-RASA1-3:17	XLOC_004457	linc-POLR3G-10	NA	NA	NA	inter
CUST_28821_PI429285431	1.192725	A	0.91582835	A	1.2115858632343	0	lncRNA	30530-1_{1..1728}	n326235|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000095286|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000095286|-0.4946030|-0.4421491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326235|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000095286|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000095286|-0.4946030|-0.4421491	chr1	216283469	216285196	+	NA	NA	NA	NA	USH2A	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90chr1:216273469-216309105"	NA	inner
CUST_15880_PI429285431	0.8983458	A	0.90177035	A	0.997629097861623	0	lncRNA	17571-1_{1..983}	lnc-ZNF711-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF711-1:2	chrX	 84474056	 84475038	+	lnc-ZNF711-1	lnc-ZNF711-1:2	XLOC_008021	linc-ZNF711	NA	NA	NA	inter
CUST_10602_PI429285431	0.91657203	A	1.2321866	A	0.803508633224353	0	lncRNA	12130-1_{1..372}	lnc-BTG3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTG3-2:1	chr21	 18386481	 18386852	-	lnc-BTG3-2	lnc-BTG3-2:1	XLOC_014010	linc-NRIP1-1	NA	NA	NA	inter
LNCA_21_P0002345	0.925052	A	0.92342573	A	1.00112788004417	0	lncRNA	TCONS_00004013	NA	NA	NA	NA	XLOC_001847	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001847), lincRNA [TCONS_00004013]"	chr2:216341374-216341433	hs|2q35	Agilent_HUMAN_G3V2	TCONS_00004013	TCONS_00004013	chr2	216341374	216341433	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28568_PI429285431	0.9130808	A	0.9212255	A	0.994370429911308	0	lncRNA	30246-1_{1..500}	n325925|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049143|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049143|-0.1388930|-0.2253652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325925|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049143|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049143|-0.1388930|-0.2253652	chr10	 87182598	 87183097	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-63.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10"	NA	inter
LNCA_21_P0002996	0.9265553	A	0.9242067	A	1.00162925125826	0	lncRNA	TCONS_00006911	NA	NA	NA	NA	XLOC_002727	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002727), lincRNA [TCONS_00006911]"	chr3:88517013-88517072	hs|3p11.1	Agilent_HUMAN_G3V2	TCONS_00006911	TCONS_00006911	chr3	 88517013	 88517072	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13946_PI429285431	1.8143296	A	1.2546303	A	1.47396196832677	0	lncRNA	15593-1_{1..498}	lnc-EIF2S2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2S2-2:1	chr20	 32579581	 32580078	-	lnc-EIF2S2-2	lnc-EIF2S2-2:1	XLOC_013728	linc-PXMP4-2	RALY	NA	chr20:32581732-32589666	inter
CUST_5513_PI429285431	1.4645334	A	2.8264492	A	0.38906529463001	0	lncRNA	5444-1_{1..480}	"transcript_id ""ENST00000566562.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566562.1"" | genecode_v17"	chr16	 34725545	 34726024	-	ENSG00000261350.1	ENST00000566562.1	RP11-80F22.14	RP11-80F22.14-001	NA	NA	NA	inter
CUST_31309_PI429285431	11.607929	P	11.727878	P	0.920220180299098	0	lncRNA	33092-1_{1..3000}	n337774|BX647455|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|156|NULL|12.0156000|-0.1526221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337774|BX647455|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|156|NULL|12.0156000|-0.1526221	chr1	 24383963	 24386962	-	NA	NA	NA	NA	IL22RA1	NA	chr1:24446261-24448665	inner
CUST_42362_PI429285431	5.839362	P	5.88663	P	0.967767234419986	0	lncRNA	45035-1_{1..120}	ENST00000516379 ncrna:snoRNA chromosome:GRCh37:7:138309805:138309924:-1 gene:ENSG00000252188 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516379 ncrna:snoRNA chromosome:GRCh37:7:138309805:138309924:-1 gene:ENSG00000252188 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	138309805	138309924	-	ENSG00000252188	ENST00000516379	NA	NA	SVOPL	NA	chr7:138299805-138319924	inner
LNCA_21_P0004279	0.9297773	A	0.9252635	A	1.00313362732074	0	lncRNA	TCONS_00010040	NA	NA	NA	NA	XLOC_004474	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004474), lincRNA [TCONS_00010040]"	chr5:92426445-92426504	hs|5q15	Agilent_HUMAN_G3V2	TCONS_00010040	TCONS_00010040	chr5	 92426445	 92426504	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011734	1.7161589	A	1.915626	A	0.870872185033821	0	lncRNA	XR_109588	XR_109588	XR_109588	NA	Hs.190888	LOC100505851	uncharacterized LOC100505851	NA	THC2687904	NA	"PREDICTED: Homo sapiens hypothetical LOC100505851 (LOC100505851), miscRNA [XR_109588]"	chr19:24135032-24134973	hs|19p12	Agilent_HUMAN_G3V2	XR_109588	XR_109588	chr19	 24134973	 24135032	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39160_PI429285431	7.818781	P	8.700935	P	0.542556767808873	0	lncRNA	40137-1_{1..2808}	n385829|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004eyh.2||-0.0833846|-0.1518022	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n385829|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004eyh.2||-0.0833846|-0.1518022	chrX	134229014	134231821	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41893_PI429285431	0.9047798	A	0.90118086	A	1.00249770920532	0	lncRNA	43601-1_{1..85}	ENST00000577308 ncrna:miRNA chromosome:GRCh37:3:99683158:99683242:-1 gene:ENSG00000264897 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577308 ncrna:miRNA chromosome:GRCh37:3:99683158:99683242:-1 gene:ENSG00000264897 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 99683158	 99683242	-	ENSG00000264897	ENST00000577308	NA	NA	C3orf26	NA	chr3:99673158-99693242	inner
CUST_789_PI429285431	3.922316	A	2.4904783	A	2.69790154365247	0	lncRNA	782-1_{1..443}	"transcript_id ""ENST00000432822.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432822.1"" | genecode_v17"	chr2	 19911476	 19911918	+	ENSG00000235911.1	ENST00000432822.1	AC019055.1	AC019055.1-001	NA	NA	NA	inter
CUST_18644_PI429285431	3.4967334	P	3.7701814	P	0.827339862389109	0	lncRNA	20348-1_{1..787}	lnc-POTEG-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-POTEG-3:1	chr14	 19643072	 19643858	+	lnc-POTEG-3	lnc-POTEG-3:1	ENSG00000258314	CTD-2314B22.1	NA	NA	NA	inter
CUST_40953_PI429285431	0.92241424	A	0.9231353	A	0.999500324173553	0	lncRNA	41630-1_{1..3000}	n410961|NR_038423|lncRNA|Homosapiens||RefGeneNoncode|NR_038423||-1.2095700|-0.2652545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n410961|NR_038423|lncRNA|Homosapiens||RefGeneNoncode|NR_038423||-1.2095700|-0.2652545	chr1	146853913	146856912	-	NA	NA	NA	NA	BCL9	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30chr1:146890733-146999699"	NA	inter
CUST_2958_PI429285431	2.1309915	A	2.156933	A	0.982179420957379	0	lncRNA	2939-1_{1..531}	"transcript_id ""ENST00000427073.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427073.1"" | genecode_v17"	chr7	156737415	156737945	+	ENSG00000230033.1	ENST00000427073.1	RP5-1121A15.3	RP5-1121A15.3-001	NOM1	NA	chr7:156742417-156748339	inter
CUST_30596_PI429285431	0.91772735	A	0.90972155	A	1.00556462301519	0	lncRNA	32378-1_{1..333}	n335890|X64162|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322661|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322661|2.1851200|-0.1019657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335890|X64162|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322661|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322661|2.1851200|-0.1019657	chr2	 89161034	 89161366	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50891_PI429285431	1.4642062	A	1.6214687	A	0.896724984688875	0	lncRNA	54534-1_{1..508}	hg19_lincRNAsTranscripts_TCONS_l2_00006326 range=chr12:74551602-74686383 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006326 range=chr12:74551602-74686383 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 74551602	 74552109	-	NA	NA	NA	NA	NA	"hg19_refFlat_VENTX:range=chr10:135051419-1350538105'pad=0,hg19_refFlat_VENTX:range=chr10:135051419-1350538105'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20"	NA	inter
CUST_930_PI429285431	1.0248401	A	1.3256526	A	0.811795079147272	0	lncRNA	920-1_{1..167}	"transcript_id ""ENST00000419809.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419809.1"" | genecode_v17"	chr2	 67792736	 67792902	-	ENSG00000235495.1	ENST00000419809.1	AC010987.5	AC010987.5-001	NA	NA	NA	inter
CUST_2996_PI429285431	4.1614585	P	4.36727	P	0.867050843454308	0	lncRNA	2976-1_{1..674}	"transcript_id ""ENST00000523246.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523246.1"" | genecode_v17"	chr8	  9107050	  9107723	+	ENSG00000254235.1	ENST00000523246.1	RP11-115J16.1	RP11-115J16.1-002	NA	NA	NA	inter
CUST_47099_PI429285431	1.9041682	A	1.6609846	A	1.18360163947	0	lncRNA	51180-1_{1..812}	"gi|397139707|ref|XR_158928.1| PREDICTED: Homo sapiens uncharacterized LOC100996665, transcript variant 1 (LOC100996665), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139707|ref|XR_158928.1| PREDICTED: Homo sapiens uncharacterized LOC100996665, transcript variant 1 (LOC100996665), misc_RNA"	Chr19	 32516768	 32517579	+	100996665	XR_158928.2	NA	NA	NA	NA	NA	inter
CUST_21922_PI429285431	3.2979927	P	3.2440386	P	1.03810624219461	0	lncRNA	23531-1_{1..472}	lnc-KDM4C-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KDM4C-1:2	chr9	  6719071	  6719542	+	lnc-KDM4C-1	lnc-KDM4C-1:2	ENSG00000225489.1	RP11-390F4.3	KDM4C	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.51;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_GJC3:range=chr7:99521168-995272435'pad=0,hg19_refFlat_GJC3:range=chr7:99521168-995272435'pad=0 3'pad=0 strand=- repeatMasking=none,-61.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-59.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80chr9:6709071-6729370"	NA	inter
CUST_6308_PI429285431	0.90704954	A	0.9077012	A	0.999548405707728	0	lncRNA	6232-1_{1..725}	"transcript_id ""ENST00000592709.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592709.1"" | genecode_v17"	chr19	  4769153	  4769877	+	ENSG00000176840.7	ENST00000592709.1	MIR7-3HG	MIR7-3HG-004	NA	NA	NA	inter
CUST_47293_PI429285431	0.91009873	A	0.902376	A	1.00536734136757	0	lncRNA	51361-2_{3001..3865}	"gi|395455056|ref|NR_073026.1| Homo sapiens zinc finger protein 334 (ZNF334), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|395455056|ref|NR_073026.1| Homo sapiens zinc finger protein 334 (ZNF334), transcript variant 4, non-coding RNA"	Chr20	 45131269	 45132133	-	55713	NR_073026.1	NA	NA	NA	NA	NA	inter
CUST_18071_PI429285431	0.91238093	A	0.9135623	A	0.999181471892347	0	lncRNA	19806-1_{1..936}	lnc-TMEM116-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM116-2:5	chr12	112279131	112280066	-	lnc-TMEM116-2	lnc-TMEM116-2:5	XLOC_010202	linc-BRAP-2	MAPKAPK5	NA	chr12:112280279-112289765	inter
CUST_46367_PI429285431	1.307509	A	0.90642554	A	1.32049922976998	0	lncRNA	50589-1_{1..3000}	"gi|258613864|ref|NR_028467.1| Homo sapiens ataxin 3 (ATXN3), transcript variant z, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|258613864|ref|NR_028467.1| Homo sapiens ataxin 3 (ATXN3), transcript variant z, non-coding RNA"	Chr14	 92524896	 92527895	-	4287	NR_028467.1	NA	NA	NA	"hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_40357_PI429285431	1.5968795	A	1.4210181	A	1.12963868474347	0	lncRNA	41158-1_{1..1727}	n409093|NR_033200|lncRNA|Homosapiens||RefGeneNoncode|NR_033200||8.4364700|-0.3880395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409093|NR_033200|lncRNA|Homosapiens||RefGeneNoncode|NR_033200||8.4364700|-0.3880395	chr12	 50794591	 50796317	+	NA	NA	NA	NA	LARP4	NA	chr12:50784591-50865272	inner
CUST_25818_PI429285431	10.49986	P	10.387802	P	1.08076885081511	0	lncRNA	27339-1_{1..249}	lnc-TCN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TCN2-1:1	chr22	 31002579	 31002827	+	lnc-TCN2-1	lnc-TCN2-1:1	ENSG00000223831.1	RP1-56J10.8	TCN2	NA	chr22:31003070-31012674	inter
CUST_16616_PI429285431	0.9043038	A	0.9030534	A	1.00086708693729	0	lncRNA	18316-1_{1..779}	lnc-ADCY2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADCY2-4:1	chr5	  7318280	  7319058	+	lnc-ADCY2-4	lnc-ADCY2-4:1	XLOC_004277	linc-ADCY2-4	NA	NA	NA	inter
CUST_3085_PI429285431	4.0675383	P	4.6043844	P	0.689276101336208	0	lncRNA	3064-1_{1..739}	"transcript_id ""ENST00000521257.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521257.1"" | genecode_v17"	chr8	 39972170	 39972908	+	ENSG00000253665.1	ENST00000521257.1	RP11-359E19.2	RP11-359E19.2-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80"	NA	inter
CUST_12631_PI429285431	0.90369105	A	0.90056926	A	1.00216620277126	0	lncRNA	14247-1_{1..1396}	lnc-SLITRK6-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK6-3:2	chr13	 85722163	 85723558	-	lnc-SLITRK6-3	lnc-SLITRK6-3:2	XLOC_010679	linc-SLITRK1-4	NA	NA	NA	inter
CUST_28187_PI429285431	1.0351156	A	0.9031313	A	1.09579984143885	0	lncRNA	29814-1_{1..319}	n325467|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322559|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322559|-1.2385900|-0.4264041	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325467|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322559|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322559|-1.2385900|-0.4264041	chr2	  5607362	  5607680	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35695_PI429285431	6.4109983	P	6.3940997	P	1.01178208529833	0	lncRNA	37114-1_{1..1298}	n342857|BC020828|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5361|NULL|1.4366600|-0.3225028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342857|BC020828|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5361|NULL|1.4366600|-0.3225028	chr9	 35507475	 35508772	+	NA	NA	NA	NA	RUSC2	NA	chr9:35497475-35518705	inter
CUST_51322_PI429285431	1.1165807	A	0.9083137	A	1.15529957640568	0	lncRNA	54926-1_{1..726}	hg19_lincRNAsTranscripts_TCONS_l2_00009062 range=chr15:43991625-43993449 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009062 range=chr15:43991625-43993449 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 43991625	 43992350	-	NA	NA	NA	NA	CKMT1A	NA	chr15:43985084-43991420	inter
CUST_21522_PI429285431	0.91496813	A	0.9111982	A	1.00261653351477	0	lncRNA	23140-1_{1..876}	lnc-FGFR1OP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FGFR1OP2-2:1	chr12	 26801686	 26802561	+	lnc-FGFR1OP2-2	lnc-FGFR1OP2-2:1	ENSG00000234428.2	RP11-666F17.1	ITPR2	NA	chr12:26791686-26812412	inner
CUST_46495_PI429285431	0.93286526	A	1.0840595	A	0.900504730512922	0	lncRNA	50689-1_{1..2956}	"gi|296278233|ref|NR_033672.1| Homo sapiens NADPH oxidase, EF-hand calcium binding domain 5 (NOX5), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|296278233|ref|NR_033672.1| Homo sapiens NADPH oxidase, EF-hand calcium binding domain 5 (NOX5), transcript variant 5, non-coding RNA"	Chr15	 69222839	 69225794	+	79400	NR_033672.1	NA	NA	NA	NA	NA	inter
CUST_16434_PI429285431	2.8969297	A	3.265184	P	0.774719361211369	0	lncRNA	18133-3_{6001..6805}	lnc-NDRG4-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDRG4-1:4	chr16	 58477060	 58477864	+	lnc-NDRG4-1	lnc-NDRG4-1:4	XLOC_011740	linc-NDRG4	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40"	NA	inter
CUST_3387_PI429285431	3.6315339	P	3.0748267	P	1.47090818960312	0	lncRNA	3361-1_{1..852}	"transcript_id ""ENST00000433357.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433357.2"" | genecode_v17"	chr9	 33580693	 33581544	+	ENSG00000226562.2	ENST00000433357.2	RP11-255A11.21	RP11-255A11.21-003	NA	NA	NA	inter
CUST_17841_PI429285431	5.011079	P	4.620697	P	1.31074041867646	0	lncRNA	19576-1_{1..633}	lnc-MKI67IP-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MKI67IP-1:3	chr2	123260716	123261348	-	lnc-MKI67IP-1	lnc-MKI67IP-1:3	XLOC_002301	linc-MKI67IP-3	NA	NA	NA	inter
CUST_29940_PI429285431	3.9482265	P	4.2610245	P	0.805078853433696	0	lncRNA	31704-1_{1..345}	n334128|M62627|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196023|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196023|-1.2329300|-0.2185139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334128|M62627|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196023|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196023|-1.2329300|-0.2185139	chr5	 74632744	 74633088	+	NA	NA	NA	NA	HMGCR	NA	chr5:74632993-74643089	inner
CUST_38773_PI429285431	7.577795	P	7.813067	P	0.84952481799995	0	lncRNA	39765-1_{1..1325}	n384395|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fxw.2||3.4845500|-0.1684723	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384395|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fxw.2||3.4845500|-0.1684723	chr3	197338442	197339766	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34586_PI429285431	4.7333593	P	5.85855	P	0.458441419358278	0	lncRNA	36044-1_{1..2118}	n341470|BC012900|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3940|NULL|-0.9355230|-0.2740585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341470|BC012900|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3940|NULL|-0.9355230|-0.2740585	chr8	 29190579	 29192696	-	NA	NA	NA	NA	DUSP4	NA	chr8:29190579-29202682	inner
CUST_25824_PI429285431	2.8517566	A	3.6575875	P	0.572032531285333	0	lncRNA	27345-1_{1..414}	lnc-TRPC7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TRPC7-1:1	chr5	135732576	135732989	-	lnc-TRPC7-1	lnc-TRPC7-1:1	ENSG00000249612.1	AC063980.1	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
CUST_41477_PI429285431	7.337716	P	5.1349654	P	4.60356207456937	0	lncRNA	42675-1_{1..92}	ENST00000583484 ncrna:miRNA chromosome:GRCh37:6:112683050:112683141:-1 gene:ENSG00000266485 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583484 ncrna:miRNA chromosome:GRCh37:6:112683050:112683141:-1 gene:ENSG00000266485 gene_biotype:miRNA transcript_biotype:miRNA	chr6	112683050	112683141	-	ENSG00000266485	ENST00000583484	NA	NA	NA	NA	NA	inter
CUST_15275_PI429285431	1.4075099	A	1.3330309	A	1.05298070469845	0	lncRNA	16950-1_{1..747}	lnc-SLC44A3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC44A3-2:2	chr1	 95153449	 95154195	+	lnc-SLC44A3-2	lnc-SLC44A3-2:2	XLOC_000303	linc-SLC44A3-1	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10"	NA	inter
CUST_34012_PI429285431	1.1767207	A	1.6529442	A	0.718856893640761	0	lncRNA	35547-3_{6001..7073}	n340827|BX647262|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3291|NULL|-0.6889870|-0.2464559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340827|BX647262|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3291|NULL|-0.6889870|-0.2464559	chr6	  3911153	  3912225	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34621_PI429285431	1.6252629	A	1.8940352	A	0.830025577868227	0	lncRNA	36075-1_{1..591}	n341511|AF086211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3981|NULL|-0.7988100|-0.2980561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341511|AF086211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3981|NULL|-0.7988100|-0.2980561	chr8	 62575376	 62575966	+	NA	NA	NA	NA	ASPH	NA	chr8:62565376-62585957	inner
CUST_18764_PI429285431	3.0366402	A	2.9670658	P	1.0494070592627	0	lncRNA	20460-1_{1..1122}	lnc-TUBGCP2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUBGCP2-1:5	chr10	135090276	135091397	-	lnc-TUBGCP2-1	lnc-TUBGCP2-1:5	ENSG00000151651	ADAM8	ADAM8	NA	chr10:135080276-135090407	inner
CUST_6458_PI429285431	0.9129337	A	0.90023506	A	1.00884087825601	0	lncRNA	6399-1_{1..532}	"transcript_id ""ENST00000593038.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593038.1"" | genecode_v17"	chr19	 32594489	 32595020	+	ENSG00000267133.1	ENST00000593038.1	AC011518.2	AC011518.2-001	NA	NA	NA	inter
CUST_5135_PI429285431	6.4555135	P	7.366889	P	0.531677935022395	0	lncRNA	5075-1_{1..1738}	"transcript_id ""ENST00000558441.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558441.1"" | genecode_v17"	chr15	 33009471	 33011208	-	ENSG00000259721.1	ENST00000558441.1	RP11-758N13.1	RP11-758N13.1-002	GREM1	NA	chr15:33010205-33021208	inner
CUST_28457_PI429285431	4.5114355	P	4.4334817	P	1.05551991576055	0	lncRNA	30118-1_{1..480}	n325785|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044344|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044344|-0.7679340|-0.1106468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325785|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044344|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044344|-0.7679340|-0.1106468	chr13	 29579735	 29580214	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38148_PI429285431	7.40578	P	5.7620854	P	3.12465000242382	0	lncRNA	39220-1_{1..2331}	n381351|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hns.1||0.3689630|-0.4298839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381351|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hns.1||0.3689630|-0.4298839	chr1	222906202	222908532	+	NA	NA	NA	NA	FAM177B	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40chr1:222910558-222918533"	NA	inter
CUST_1265_PI429285431	9.128248	P	9.785353	P	0.634149544291638	0	lncRNA	1257-1_{1..562}	"transcript_id ""ENST00000418025.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418025.1"" | genecode_v17"	chr2	235346972	235347533	+	ENSG00000228162.1	ENST00000418025.1	AC097713.3	AC097713.3-001	NA	NA	NA	inter
CUST_29258_PI429285431	0.9177308	A	0.89982694	A	1.01248733378683	0	lncRNA	31009-1_{1..213}	n332355|FJ011559|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558398|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558398|0.9670750|-0.1411137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332355|FJ011559|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558398|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558398|0.9670750|-0.1411137	chr6	152163859	152164071	+	NA	NA	NA	NA	ESR1	NA	chr6:152153859-152424409	inner
CUST_21744_PI429285431	0.905057	A	0.9054397	A	0.999734767754292	0	lncRNA	23354-1_{1..391}	lnc-KCTD3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCTD3-2:2	chr1	216260064	216260454	+	lnc-KCTD3-2	lnc-KCTD3-2:2	ENSG00000233620.1	RP11-22M7.2	USH2A	"hg19_refFlat_USH2A:range=chr1:215799123-2165956785'pad=0,hg19_refFlat_USH2A:range=chr1:215799123-2165956785'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90chr1:216250064-216270247"	NA	inner
LNCA_21_P0001241	0.91802615	A	0.9030099	A	1.01046282791389	0	lncRNA	ENST00000441459	NA	BC041826	NA	Hs.639388	XLOC_001258	NA	ENST00000441459	THC2614476	NA	"BROAD Institute lincRNA (XLOC_001258), lincRNA [TCONS_00000761]"	chr1:232310773-232310714	hs|1q42.2	Agilent_HUMAN_G3V2	ENST00000441459	ENST00000441459	chr1	232310714	232310773	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1161_PI429285431	0.89777255	A	0.89303905	A	1.00328640059118	0	lncRNA	1150-1_{1..561}	"transcript_id ""ENST00000444196.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444196.1"" | genecode_v17"	chr2	175352117	175352677	+	ENSG00000226853.1	ENST00000444196.1	AC010894.3	AC010894.3-002	GPR155	NA	chr2:175342117-175351811	inter
CUST_40801_PI429285431	2.833964	A	1.307087	A	2.88161380915671	0	lncRNA	41509-1_{1..1853}	n410561|NR_037793|lncRNA|Homosapiens||RefGeneNoncode|NR_037793||3.9483600|-0.1905938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410561|NR_037793|lncRNA|Homosapiens||RefGeneNoncode|NR_037793||3.9483600|-0.1905938	chr14	 50065414	 50067266	+	NA	NA	NA	NA	LRR1	NA	chr14:50065415-50081390	inner
CUST_27697_PI429285431	0.89741427	A	1.3827549	A	0.714328392221737	0	lncRNA	29276-1_{1..824}	n324905|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000157934|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000157934|-0.0660443|-0.2716202	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324905|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000157934|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000157934|-0.0660443|-0.2716202	chr21	 15265661	 15266484	+	NA	NA	NA	NA	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20"	NA	inter
CUST_13429_PI429285431	0.9508149	A	0.9640605	A	0.990860867775812	0	lncRNA	15068-1_{1..1649}	lnc-EIF2B5-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2B5-2:4	chr3	184456423	184458071	+	lnc-EIF2B5-2	lnc-EIF2B5-2:4	XLOC_002952	linc-VPS8-2	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60"	NA	inter
CUST_35081_PI429285431	0.9047594	A	1.0145309	A	0.926734830357715	0	lncRNA	36490-1_{1..3000}	n342043|BC042096|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4524|NULL|0.1174040|-0.3070131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342043|BC042096|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4524|NULL|0.1174040|-0.3070131	chr6	 79943434	 79946433	+	NA	NA	NA	NA	HMGN3	NA	chr6:79933434-79944455	inner
CUST_15901_PI429285431	3.928612	P	3.6751387	P	1.19207358991359	0	lncRNA	17594-1_{1..315}	lnc-PDZRN4-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PDZRN4-1:5	chr12	 42159122	 42159436	+	lnc-PDZRN4-1	lnc-PDZRN4-1:5	XLOC_009714	linc-PPHLN1	NA	NA	NA	inter
CUST_15701_PI429285431	4.335321	P	4.6173353	P	0.822441916623935	0	lncRNA	17389-1_{1..728}	lnc-RXRA-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RXRA-2:1	chr9	137160152	137160879	+	lnc-RXRA-2	lnc-RXRA-2:1	XLOC_007597	linc-RXRA-1	NA	NA	NA	inter
CUST_20304_PI429285431	4.498637	P	4.4815884	P	1.01188728785227	0	lncRNA	21947-1_{1..370}	lnc-RP11-410N8.4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-410N8.4.1-1:1	chr20	 31181495	 31181864	+	lnc-RP11-410N8.4.1-1	lnc-RP11-410N8.4.1-1:1	ENSG00000228156.1	RP11-410N8.1	LOC284804	NA	chr20:31171495-31173628	inter
LNCA_21_P0007587	0.91855705	A	0.90465254	A	1.00968446575922	0	lncRNA	TCONS_00020480	NA	NA	NA	NA	XLOC_009811	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009811), lincRNA [TCONS_00020480]"	chr12:77407113-77407172	hs|12q21.2	Agilent_HUMAN_G3V2	TCONS_00020480	TCONS_00020480	chr12	 77407113	 77407172	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44745_PI429285431	0.9140915	A	0.91760856	A	0.99756512889638	0	lncRNA	49294-1_{1..3000}	"gi|378925610|ref|NR_046399.1| Homo sapiens ring finger protein 8, E3 ubiquitin protein ligase (RNF8), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378925610|ref|NR_046399.1| Homo sapiens ring finger protein 8, E3 ubiquitin protein ligase (RNF8), transcript variant 3, non-coding RNA"	Chr6	 37321748	 37324747	+	9025	NR_046399.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70"	NA	inter
CUST_39927_PI429285431	1.0445436	A	0.9298598	A	1.08273771249575	0	lncRNA	40805-1_{1..1553}	n406791|NR_024240_4|lncRNA|Homosapiens||RefGeneNoncode|NR_024240_4||-1.0280700|-0.3152641	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406791|NR_024240_4|lncRNA|Homosapiens||RefGeneNoncode|NR_024240_4||-1.0280700|-0.3152641	chr6	  1272321	  1273873	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42874_PI429285431	0.9525236	A	0.96847117	A	0.989006857924971	0	lncRNA	45943-1_{1..125}	ENST00000408221 ncrna:snoRNA chromosome:GRCh37:12:84577103:84577227:-1 gene:ENSG00000221148 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408221 ncrna:snoRNA chromosome:GRCh37:12:84577103:84577227:-1 gene:ENSG00000221148 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 84577103	 84577227	-	ENSG00000221148	ENST00000408221	NA	NA	NA	NA	NA	inter
CUST_28093_PI429285431	2.8029964	A	3.3588798	P	0.680240401664509	0	lncRNA	29714-1_{1..466}	n325364|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324840|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324840|-1.2483100|-0.2906232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325364|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324840|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324840|-1.2483100|-0.2906232	chr2	 25280685	 25281150	+	NA	NA	NA	NA	EFR3B	NA	chr2:25270685-25295575	inner
CUST_22292_PI429285431	3.6862097	P	2.6887484	A	1.99648370920848	0	lncRNA	23892-1_{1..500}	lnc-CACNA2D3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CACNA2D3-3:1	chr3	 55522018	 55522517	+	lnc-CACNA2D3-3	lnc-CACNA2D3-3:1	ENSG00000244586.1	WNT5A-AS1	WNT5A	NA	chr3:55512018-55521331	inter
CUST_50821_PI429285431	3.5357938	P	4.242161	P	0.612861422450673	0	lncRNA	54472-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00004559 range=chr11:65184126-65194186 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004559 range=chr11:65184126-65194186 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65184126	 65187125	+	NA	NA	NA	NA	FRMD8	NA	chr11:65174126-65180996	inter
CUST_29101_PI429285431	1.1115828	A	0.8961272	A	1.16107052007431	0	lncRNA	30834-1_{1..530}	n326599|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023037|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023037|-1.0336300|-0.3083419	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326599|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023037|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023037|-1.0336300|-0.3083419	chr1	 59258646	 59259175	+	NA	NA	NA	NA	JUN	NA	chr1:59248646-59249785	inter
CUST_7158_PI429285431	0.91864866	A	0.9023134	A	1.01138708425057	0	lncRNA	7177-1_{1..291}	"transcript_id ""ENST00000410732.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410732.1"" | genecode_v17"	chr1	 93491809	 93492099	+	ENSG00000222664.1	ENST00000410732.1	RN7SKP123	RN7SKP123-201	NA	NA	NA	inter
CUST_35516_PI429285431	0.90054715	A	0.9227954	A	0.984696987776277	0	lncRNA	36923-1_{1..2593}	n342620|BC041865|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5122|NULL|-1.2549300|-0.3415438	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342620|BC041865|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5122|NULL|-1.2549300|-0.3415438	chr4	132678559	132681151	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014827	0.9261372	A	1.8066545	A	0.543172633626101	0	lncRNA	XR_132674	XR_132674	XR_132674	NA	Hs.650137	LOC100287166	uncharacterized LOC100287166	NA	THC2495854	NA	"PREDICTED: Homo sapiens hypothetical LOC100287166 (LOC100287166), miscRNA [XR_132674]"	chr20:19738581-19738522	hs|20p11.23	Agilent_HUMAN_G3V2	XR_132674	XR_132674	chr20	 19738522	 19738581	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23615_PI429285431	0.9019592	A	0.89008665	A	1.00826337935173	0	lncRNA	25182-1_{1..325}	lnc-CHRNA3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHRNA3-2:1	chr15	 78774042	 78774366	-	lnc-CHRNA3-2	lnc-CHRNA3-2:1	ENSG00000259474.1	RP11-650L12.1	IREB2	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20chr15:78764042-78784162"	NA	inner
CUST_49843_PI429285431	3.255185	P	3.6971083	P	0.736152567145016	0	lncRNA	53601-1_{1..421}	hg19_lincRNAsTranscripts_TCONS_l2_00026656 range=chr7:65956931-65958227 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026656 range=chr7:65956931-65958227 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 65956931	 65957351	-	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90"	NA	inter
CUST_11406_PI429285431	1.1229632	A	0.91847587	A	1.15227680583091	0	lncRNA	12972-1_{1..1030}	lnc-DPYD-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-DPYD-2:1	chr1	 98440520	 98441549	-	lnc-DPYD-2	lnc-DPYD-2:1	XLOC_000933	linc-DPYD-2	NA	NA	NA	inter
CUST_13282_PI429285431	0.9077365	A	0.9054759	A	1.00156815679032	0	lncRNA	14913-1_{1..670}	lnc-TMEM18-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM18-8:1	chr2	   492521	   493190	-	lnc-TMEM18-8	lnc-TMEM18-8:1	XLOC_001928	linc-FAM150B-1	NA	NA	NA	inter
LNCA_21_P0006148	3.2457879	P	3.7317932	P	0.713999366832479	0	lncRNA	TCONS_00015989	NA	NA	NA	NA	XLOC_007368	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007368), lincRNA [TCONS_00015989]"	chr9:47163942-47164001	hs|9p11.2	Agilent_HUMAN_G3V2	TCONS_00015989	TCONS_00015989	chr9	 47163942	 47164001	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35998_PI429285431	0.9113742	A	0.90740144	A	1.00275750232783	0	lncRNA	37334-1_{1..2825}	n344609|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_157|NULL|-1.4518600|-0.2107381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344609|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_157|NULL|-1.4518600|-0.2107381	chr1	 38520034	 38522858	-	NA	NA	NA	NA	POU3F1	NA	chr1:38510034-38512450	inter
CUST_2838_PI429285431	0.90252197	A	0.929671	A	0.981357684639066	0	lncRNA	2822-1_{1..939}	"transcript_id ""ENST00000421500.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421500.1"" | genecode_v17"	chr7	 55659767	 55660705	+	ENSG00000233977.1	ENST00000421500.1	RP11-310H4.2	RP11-310H4.2-001	NA	NA	NA	inter
LNCA_21_P0006006	0.9625003	A	0.9236708	A	1.02728002661341	0	lncRNA	ENST00000433838	NA	NA	NA	NA	XLOC_007342	NA	ENST00000433838	NA	NA	"BROAD Institute lincRNA (XLOC_007342), lincRNA [TCONS_00015665]"	chr9:35935742-35935801	hs|9p13.3	Agilent_HUMAN_G3V2	ENST00000433838	ENST00000433838	chr9	 35935742	 35935801	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50531_PI429285431	3.0478945	P	3.6652102	P	0.651882702767852	0	lncRNA	54226-1_{1..1550}	hg19_lincRNAsTranscripts_TCONS_l2_00030389 range=chrX:149112083-149113822 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030389 range=chrX:149112083-149113822 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	149112083	149113632	+	NA	NA	NA	NA	CXorf40B	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90chrX:149102083-149106716"	NA	inter
LNCA_21_P0010499	0.97477376	A	0.9805014	A	0.996037772900998	0	lncRNA	TCONS_00040338_HOTTIP	NA	NA	NA	NA	HOTTIP	NA	NA	NA	NA	"BROAD Institute lincRNA (HOTTIP), lincRNA [TCONS_00040338_HOTTIP]"	chr7:27246973-27247032	hs|7p15.2	Agilent_HUMAN_G3V2	TCONS_00040338_HOTTIP	TCONS_00040338_HOTTIP	chr7	 27246973	 27247032	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13139_PI429285431	7.840711	P	8.177894	P	0.791585450106947	0	lncRNA	14767-1_{1..362}	lnc-QPCT-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-QPCT-1:2	chr2	 37553620	 37553981	+	lnc-QPCT-1	lnc-QPCT-1:2	XLOC_001428	linc-QPCT	PRKD3	NA	chr2:37543620-37544222	inter
CUST_28325_PI429285431	4.4778633	P	5.2169614	P	0.599113770903146	0	lncRNA	29970-1_{1..684}	n325630|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045793|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045793|-1.0919900|-0.3714769	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325630|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045793|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045793|-1.0919900|-0.3714769	chr13	110433654	110434337	+	NA	NA	NA	NA	IRS2	NA	chr13:110423654-110438914	inner
CUST_24891_PI429285431	0.9207621	A	0.90631586	A	1.01006367207616	0	lncRNA	26432-1_{1..641}	lnc-MRPS6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPS6-2:1	chr21	 35732205	 35732845	+	lnc-MRPS6-2	lnc-MRPS6-2:1	ENSG00000214955.4	AP000318.2	KCNE2	NA	chr21:35736323-35742332	inter
CUST_1864_PI429285431	5.702256	P	5.727736	P	0.982493658059656	0	lncRNA	1854-1_{1..637}	"transcript_id ""ENST00000512219.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512219.1"" | genecode_v17"	chr4	120720251	120720887	-	ENSG00000250772.1	ENST00000512219.1	RP11-236P13.1	RP11-236P13.1-002	NA	NA	NA	inter
CUST_4884_PI429285431	1.946847	A	1.8314619	A	1.08326416370089	0	lncRNA	4826-2_{3001..3625}	"transcript_id ""ENST00000602396.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602396.1"" | genecode_v17"	chr14	 71688817	 71689441	+	ENSG00000269945.1	ENST00000602396.1	RP6-91H8.5	RP6-91H8.5-001	NA	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50"	NA	inter
CUST_29198_PI429285431	7.0962343	P	7.0895414	P	1.00464994234951	0	lncRNA	30945-1_{1..1686}	n326715|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000004978|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000004978|0.1837990|-0.1871665	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326715|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000004978|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000004978|0.1837990|-0.1871665	chr1	  6707283	  6708968	+	NA	NA	NA	NA	DNAJC11	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00chr1:6697283-6720055"	NA	inner
CUST_18212_PI429285431	1.30301	A	1.1131365	A	1.14066369453368	0	lncRNA	19947-1_{1..592}	lnc-APOBEC3G-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-APOBEC3G-1:1	chr22	 39488535	 39489126	+	lnc-APOBEC3G-1	lnc-APOBEC3G-1:1	ENSG00000225720	RP4-742C19.12	APOBEC3H	NA	chr22:39493229-39498860	inter
CUST_22130_PI429285431	1.0653296	A	0.9155515	A	1.10939882302222	0	lncRNA	23732-2_{3001..3851}	lnc-ACSL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACSL1-3:1	chr4	185908431	185909281	-	lnc-ACSL1-3	lnc-ACSL1-3:1	ENSG00000265405.1	RP11-517M22.1	NA	NA	NA	inter
CUST_51403_PI429285431	0.9339454	A	0.92903924	A	1.00340647988116	0	lncRNA	54984-1_{1..261}	hg19_lincRNAsTranscripts_TCONS_l2_00009776 range=chr16:58963575-59233253 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009776 range=chr16:58963575-59233253 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 58963575	 58963835	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50666_PI429285431	3.387408	P	2.37533	A	2.01681394685587	0	lncRNA	54341-1_{1..2832}	hg19_lincRNAsTranscripts_TCONS_l2_00003504 range=chr10:43014643-43047847 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003504 range=chr10:43014643-43047847 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 43014643	 43017474	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1746_PI429285431	0.91917896	A	1.5526621	A	0.64461821483399	0	lncRNA	1732-1_{1..500}	"transcript_id ""ENST00000512170.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512170.1"" | genecode_v17"	chr4	 38565624	 38566123	+	ENSG00000251635.1	ENST00000512170.1	RP11-213G21.2	RP11-213G21.2-001	NA	NA	NA	inter
CUST_19620_PI429285431	4.304023	P	4.1627955	P	1.10284305776425	0	lncRNA	21276-1_{1..471}	lnc-AP000322.54.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP000322.54.1-1:1	chr21	 35747536	 35748006	-	lnc-AP000322.54.1-1	lnc-AP000322.54.1-1:1	ENSG00000225555.1	AP000320.6	FAM165B	"hg19_refFlat_KCNE2:range=chr21:35742778-357431495'pad=0,hg19_refFlat_KCNE2:range=chr21:35742778-357431495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10chr21:35747749-35757647"	NA	inter
LNCA_21_P0005860	1.0738113	A	0.9296495	A	1.10508841485743	0	lncRNA	TCONS_00015042	NA	NA	NA	NA	XLOC_007124	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007124), lincRNA [TCONS_00015042]"	chr8:77071092-77071033	hs|8q21.11	Agilent_HUMAN_G3V2	TCONS_00015042	TCONS_00015042	chr8	 77071033	 77071092	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001416	1.0099909	A	0.92943734	A	1.0574236946738	0	lncRNA	TCONS_00001266	NA	NA	NA	NA	XLOC_000555	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000555), lincRNA [TCONS_00001266]"	chr1:212733308-212733367	hs|1q32.3	Agilent_HUMAN_G3V2	TCONS_00001266	TCONS_00001266	chr1	212733308	212733367	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28031_PI429285431	0.9171372	A	0.9111378	A	1.00416712561752	0	lncRNA	29645-2_{3001..3307}	n325292|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327085|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327085|0.2861310|-0.3701586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325292|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327085|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327085|0.2861310|-0.3701586	chr2	 64268715	 64269021	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20"	NA	inter
CUST_47013_PI429285431	1.5319047	A	1.0204873	A	1.4254499651563	0	lncRNA	51108-1_{1..2076}	"gi|310123785|ref|XR_110157.1| PREDICTED: Homo sapiens FLJ44313 protein (FLJ44313), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123785|ref|XR_110157.1| PREDICTED: Homo sapiens FLJ44313 protein (FLJ44313), misc_RNA"	NA	NA	NA	NA	NA	XR_110157.1	NA	NA	NA	NA	NA	Unknown
CUST_30586_PI429285431	3.132832	A	2.7899218	A	1.26831245124632	0	lncRNA	32368-1_{1..344}	n335866|X58815|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322294|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322294|2.3259800|-0.0827816	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335866|X58815|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322294|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322294|2.3259800|-0.0827816	chr7	142161936	142162279	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17602_PI429285431	1.205714	A	0.9110546	A	1.2265953611618	0	lncRNA	19328-1_{1..387}	lnc-ZUFSP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZUFSP-1:1	chr6	116937425	116937811	-	lnc-ZUFSP-1	lnc-ZUFSP-1:1	XLOC_005816	linc-BET3L	RSPH4A	NA	chr6:116937642-116947516	inter
CUST_28276_PI429285431	0.8951472	A	0.8998963	A	0.996713586841415	0	lncRNA	29911-1_{1..627}	n325570|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129991|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129991|-0.9965240|-0.3692545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325570|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129991|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129991|-0.9965240|-0.3692545	chr17	 14682003	 14682629	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17_PI429201921	3.8037055	P	2.6398783	A	2.24051005335871	0	lncRNA	18-1_{1..869}	TC0X001696.hg.1	 TCONS_l2_00030197-XLOC_l2_015512 // Broad TUCP // linc-FTSJ1 chrX:+:48306415-48307284 // chrX // 100 // 100 // 0 // --- // 0///TCONS_l2_00030196-XLOC_l2_015512 // Broad TUCP // linc-FTSJ1 chrX:+:48306414-48307208 // chrX // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chrX:+:48306414-48307208	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00030196-XLOC_l2_015512	linc-FTSJ1	chrX	 48306414	 48307208	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7311_PI429285431	0.89906365	A	0.9010395	A	0.998631382555549	0	lncRNA	8496-1_{1..293}	"transcript_id ""ENST00000410411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410411.1"" | genecode_v17"	chr15	 47564794	 47565086	+	ENSG00000222343.1	ENST00000410411.1	RN7SKP139	RN7SKP139-201	SEMA6D	NA	chr15:47554794-47575086	inner
CUST_26490_PI429285431	3.9077382	P	4.2065215	P	0.812937700116606	0	lncRNA	27999-1_{1..394}	lnc-SPIN4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SPIN4-1:1	chrX	 62891135	 62891528	-	lnc-SPIN4-1	lnc-SPIN4-1:1	ENSG00000231729.1	ARHGEF9-IT1	ARHGEF9	NA	chrX:62881135-62901382	inner
CUST_18564_PI429285431	2.1471162	A	1.90285	A	1.18449014881433	0	lncRNA	20274-1_{1..613}	lnc-TUBGCP2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUBGCP2-1:7	chr10	135084704	135085316	-	lnc-TUBGCP2-1	lnc-TUBGCP2-1:7	ENSG00000151651	ADAM8	ADAM8	NA	chr10:135075920-135090407	inner
CUST_28588_PI429285431	4.4567432	P	4.5234804	P	0.954794922863541	0	lncRNA	30268-1_{1..524}	n325949|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048479|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048479|-1.0968100|-0.1828988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325949|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048479|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048479|-1.0968100|-0.1828988	chr10	 71424387	 71424910	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70"	NA	inter
CUST_40115_PI429285431	10.416163	P	10.550637	P	0.911001920174627	0	lncRNA	40959-1_{1..496}	n407605|NR_027071|lncRNA|Homosapiens||RefGeneNoncode|NR_027071||3.0665400|-0.1157040	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407605|NR_027071|lncRNA|Homosapiens||RefGeneNoncode|NR_027071||3.0665400|-0.1157040	chr8	104145190	104145685	-	NA	NA	NA	NA	BAALC	NA	chr8:104152921-104163570	inner
CUST_47555_PI429285431	3.750651	P	3.3256888	P	1.34253732654805	0	lncRNA	51563-1_{1..2206}	"gi|397139795|ref|XR_110933.2| PREDICTED: Homo sapiens uncharacterized LOC441528 (LOC441528), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139795|ref|XR_110933.2| PREDICTED: Homo sapiens uncharacterized LOC441528 (LOC441528), misc_RNA"	ChrX	  3785091	  3787296	-	441528	XR_110933.3	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20"	NA	inter
CUST_14996_PI429285431	2.9305472	A	3.2292917	A	0.812959563647028	0	lncRNA	16658-2_{3001..4480}	lnc-PDE4D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PDE4D-1:1	chr5	 59820878	 59822357	-	lnc-PDE4D-1	lnc-PDE4D-1:1	XLOC_004839	linc-PDE4D	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20"	NA	inter
LNCA_21_P0002401	0.92988276	A	0.925284	A	1.00319270338331	0	lncRNA	TCONS_00004139	NA	NA	NA	NA	XLOC_001983	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001983), lincRNA [TCONS_00004139]"	chr2:10149610-10149551	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_00004139	TCONS_00004139	chr2	 10149551	 10149610	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18996_PI429285431	0.9140817	A	0.9145536	A	0.999672957335609	0	lncRNA	20687-1_{1..589}	lnc-SCGB1C1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SCGB1C1-1:1	chr11	   185902	   186490	+	lnc-SCGB1C1-1	lnc-SCGB1C1-1:1	ENSG00000255229	RP11-304M2.3	SCGB1C1	NA	chr11:193080-194573	inter
CUST_45828_PI429285431	2.162683	A	2.405404	A	0.845149810494792	0	lncRNA	50162-1_{1..2372}	"gi|406719610|ref|NR_073177.1| Homo sapiens uncharacterized LOC100996455 (LOC100996455), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|406719610|ref|NR_073177.1| Homo sapiens uncharacterized LOC100996455 (LOC100996455), non-coding RNA"	Chr11	 64216529	 64218900	+	100996455	NR_073177.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30"	NA	inter
CUST_50290_PI429285431	0.8949681	A	0.8966912	A	0.998806351059485	0	lncRNA	54009-1_{1..434}	hg19_lincRNAsTranscripts_TCONS_l2_00028853 range=chr9:79571754-79603477 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028853 range=chr9:79571754-79603477 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 79571754	 79572187	+	NA	NA	NA	NA	FOXB2	NA	chr9:79561754-79613477	inter
CUST_38187_PI429285431	7.2978363	P	6.398054	P	1.86578441842972	0	lncRNA	39254-1_{1..330}	n381457|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jii.1||2.3417000|-0.3616685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381457|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jii.1||2.3417000|-0.3616685	chr10	 51188370	 51188699	+	NA	NA	NA	NA	AGAP8	NA	chr10:51178370-51199564	inner
CUST_11831_PI429285431	0.9193808	A	0.9103043	A	1.00631118249763	0	lncRNA	13413-1_{1..3000}	lnc-TECRL-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TECRL-1:2	chr4	 64339712	 64342711	-	lnc-TECRL-1	lnc-TECRL-1:2	XLOC_003970	linc-IGFBP7-11	NA	NA	NA	inter
LNCA_21_P0006034	0.93973804	A	0.9234933	A	1.01132362809095	0	lncRNA	ENST00000420204	NA	NA	NA	NA	XLOC_007483	NA	ENST00000420204	THC2720504	NA	"BROAD Institute lincRNA (XLOC_007483), lincRNA [TCONS_00015722]"	chr9:99995598-99997190	hs|9q22.33	Agilent_HUMAN_G3V2	ENST00000420204	ENST00000420204	chr9	 99995598	 99997190	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16567_PI429285431	1.0467553	A	0.944499	A	1.07345097190857	0	lncRNA	18268-1_{1..363}	lnc-RP11-487E13.1.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-487E13.1.1-1:4	chr4	178147166	178147528	-	lnc-RP11-487E13.1.1-1	lnc-RP11-487E13.1.1-1:4	XLOC_004182	linc-VEGFC-2	NA	NA	NA	inter
CUST_3646_PI429285431	0.9163808	A	0.9075137	A	1.00616513204081	0	lncRNA	3615-1_{1..421}	"transcript_id ""ENST00000420945.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420945.1"" | genecode_v17"	chr10	 31893528	 31893948	+	ENSG00000223834.2	ENST00000420945.1	RP11-472N13.2	RP11-472N13.2-001	NA	NA	NA	inter
CUST_7483_PI429285431	4.0229383	P	4.401436	P	0.769238193008182	0	lncRNA	9123-1_{1..359}	lnc-AMIGO2-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AMIGO2-1:8	chr12	 47609948	 47610306	-	lnc-AMIGO2-1	lnc-AMIGO2-1:8	ENSG00000247774	RP11-493L12.2	FAM113B	NA	chr12:47610052-47619983	inter
CUST_49176_PI429285431	7.1158333	P	7.475811	P	0.779176623442395	0	lncRNA	53000-1_{1..282}	hg19_lincRNAsTranscripts_TCONS_l2_00021320 range=chr4:142234721-142237891 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021320 range=chr4:142234721-142237891 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	142234721	142235002	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11391_PI429285431	2.875256	A	3.2499368	P	0.771276040641249	0	lncRNA	12955-1_{1..1035}	lnc-TBX20-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBX20-2:1	chr7	 35414417	 35415451	-	lnc-TBX20-2	lnc-TBX20-2:1	XLOC_006407	linc-TBX20-2	NA	NA	NA	inter
CUST_1461_PI429285431	12.355934	P	12.641587	P	0.820370204610201	0	lncRNA	1450-1_{1..697}	"transcript_id ""ENST00000479610.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000479610.1"" | genecode_v17"	chr3	127208396	127209092	+	ENSG00000240562.1	ENST00000479610.1	RP11-59J16.2	RP11-59J16.2-001	NA	NA	NA	inter
CUST_37066_PI429285431	3.0584345	A	2.5256443	A	1.4467244846015	0	lncRNA	38198-1_{1..3000}	n345515|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1064|NULL|-1.4190800|-0.2425175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345515|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1064|NULL|-1.4190800|-0.2425175	chr2	 20729143	 20732142	+	NA	NA	NA	NA	HS1BP3	"hg19_refFlat_NDUFAF2:range=chr5:60241083-604487825'pad=0,hg19_refFlat_NDUFAF2:range=chr5:60241083-604487825'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30chr2:20729156-20810965"	NA	inter
CUST_4416_PI429285431	0.90437186	A	1.1859212	A	0.822707020620815	0	lncRNA	4366-1_{1..700}	"transcript_id ""ENST00000551982.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551982.1"" | genecode_v17"	chr12	114175253	114175952	-	ENSG00000249550.2	ENST00000551982.1	RP11-438N16.1	RP11-438N16.1-004	NA	NA	NA	inter
LNCA_33_P3235247	0.9325286	A	0.9197888	A	1.00886966083425	0	lncRNA	XR_109158	XR_109158	XR_109158	100130579	Hs.711976	LOC100130579	prohibitin pseudogene	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100130579 (LOC100130579), miscRNA [XR_109158]"	chr15:72743172-72743231	hs|15q24.1	Agilent_HUMAN_G3V2	XR_109158	XR_109158	chr15	 72743172	 72743231	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27226_PI429285431	1.0490582	A	1.2743708	A	0.855409657310683	0	lncRNA	28771-1_{1..876}	n324362|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042473|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042473|-0.3570740|-0.4011437	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324362|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042473|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042473|-0.3570740|-0.4011437	chr6	140445924	140446799	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41374_PI429285431	3.8906977	P	4.3036923	P	0.751062774689245	0	lncRNA	42462-1_{1..81}	ENST00000349529 ncrna:miRNA chromosome:GRCh37:14:101495971:101496051:1 gene:ENSG00000194717 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000349529 ncrna:miRNA chromosome:GRCh37:14:101495971:101496051:1 gene:ENSG00000194717 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101495971	101496051	+	ENSG00000194717	ENST00000349529	NA	NA	NA	NA	NA	inter
CUST_4585_PI429285431	1.8020637	A	1.5948348	A	1.15446857257465	0	lncRNA	4534-1_{1..466}	"transcript_id ""ENST00000443576.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443576.2"" | genecode_v17"	chr13	 33907983	 33908448	-	ENSG00000227911.2	ENST00000443576.2	RP11-141M1.1	RP11-141M1.1-001	NA	NA	NA	inner
LNCA_21_P0009590	7.502698	P	6.499108	P	2.00498299402226	0	lncRNA	TCONS_00026577	NA	NA	NA	NA	XLOC_012895	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012895), lincRNA [TCONS_00026577]"	chr18:74528124-74528065	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026577	TCONS_00026577	chr18	 74528065	 74528124	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32867_PI429285431	5.2973785	P	5.468102	P	0.888397045436632	0	lncRNA	34496-1_{1..1380}	n339531|CR624629|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1972|NULL|-1.1135100|-0.1422849	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339531|CR624629|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1972|NULL|-1.1135100|-0.1422849	chr21	 44875730	 44877109	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12358_PI429285431	1.0160856	A	0.9038401	A	1.08090932217094	0	lncRNA	13970-1_{1..268}	lnc-C20orf187-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf187-2:3	chr20	 10847661	 10847928	+	lnc-C20orf187-2	lnc-C20orf187-2:3	XLOC_013461	linc-BTBD3-3	NA	NA	NA	inter
CUST_15328_PI429285431	0.9225337	A	0.9185797	A	1.00274446311448	0	lncRNA	17007-1_{1..1953}	lnc-RTL1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RTL1-6:1	chr14	101822457	101824409	-	lnc-RTL1-6	lnc-RTL1-6:1	XLOC_011134	linc-RTL1-2	NA	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30"	NA	inter
CUST_12769_PI429285431	1.3416303	A	0.915137	A	1.34396288772884	0	lncRNA	14392-1_{1..450}	lnc-ZPLD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZPLD1-1:1	chr3	102446238	102446687	+	lnc-ZPLD1-1	lnc-ZPLD1-1:1	XLOC_002742	linc-ALCAM-4	NA	NA	NA	inter
CUST_52007_PI429285431	2.8587513	A	2.7552848	A	1.07435181051313	0	lncRNA	55540-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017135 range=chr21:15215457-15221989 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017135 range=chr21:15215457-15221989 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 15215457	 15218456	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_886_PI429285431	2.9030979	A	2.9751163	A	0.951306143383279	0	lncRNA	876-1_{1..3000}	"transcript_id ""ENST00000452840.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452840.1"" | genecode_v17"	chr2	 58655473	 58658472	+	ENSG00000233723.3	ENST00000452840.1	AC007092.1	AC007092.1-001	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_IK:range=chr5:140027494-1400419145'pad=0,hg19_refFlat_IK:range=chr5:140027494-1400419145'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-12.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.11;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60"	NA	inter
CUST_34765_PI429285431	3.563666	P	3.2029018	P	1.28410591229492	0	lncRNA	36205-1_{1..1660}	n341674|BC073955|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4145|NULL|-1.1365800|-0.2850770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341674|BC073955|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4145|NULL|-1.1365800|-0.2850770	chr9	 33252468	 33254127	-	NA	NA	NA	NA	SPINK4	NA	chr9:33242468-33248565	inner
CUST_33668_PI429285431	1.3577523	A	1.2303876	A	1.09229663336237	0	lncRNA	35230-1_{1..2625}	n340432|BC028978|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2893|NULL|1.8237500|-0.3486393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n340432|BC028978|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2893|NULL|1.8237500|-0.3486393	chr5	 38148581	 38151205	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43096_PI429285431	3.947873	P	4.0914326	P	0.905282769153116	0	lncRNA	47489-1_{1..189}	ENST00000410457 ncrna:snRNA chromosome:GRCh37:3:81558627:81558815:1 gene:ENSG00000222389 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410457 ncrna:snRNA chromosome:GRCh37:3:81558627:81558815:1 gene:ENSG00000222389 gene_biotype:snRNA transcript_biotype:snRNA	chr3	 81558627	 81558815	+	ENSG00000222389	ENST00000410457	NA	NA	GBE1	NA	chr3:81548627-81568815	inner
CUST_4766_PI429285431	0.92334396	A	0.9298383	A	0.995508583255213	0	lncRNA	4712-1_{1..1236}	"transcript_id ""ENST00000550309.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550309.1"" | genecode_v17"	chr14	 32395007	 32396242	-	ENSG00000257472.1	ENST00000550309.1	RP11-159D23.2	RP11-159D23.2-001	NA	NA	NA	inter
CUST_29690_PI429285431	2.8433332	A	2.4085925	A	1.3516678717867	0	lncRNA	31452-1_{1..276}	n333349|AY258329|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085633|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085633|-1.2814900|-0.2256393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333349|AY258329|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085633|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085633|-1.2814900|-0.2256393	chr22	 46567183	 46567458	+	NA	NA	NA	NA	PPARA	NA	chr22:46557183-46604307	inner
CUST_35425_PI429285431	9.060264	P	8.832325	P	1.17116066118259	0	lncRNA	36833-2_{3001..4689}	n342487|D86972|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4981|NULL|7.0012800|-0.2001420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342487|D86972|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4981|NULL|7.0012800|-0.2001420	chr3	 10293218	 10294906	+	NA	NA	NA	NA	IRAK2	NA	chr3:10280218-10285427	inner
CUST_37423_PI429285431	0.92160964	A	0.9996756	A	0.947326757841117	0	lncRNA	38530-2_{3001..6000}	n345879|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1428|NULL|-1.2825800|-0.2416485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345879|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1428|NULL|-1.2825800|-0.2416485	chr11	  3405167	  3408166	+	NA	NA	NA	NA	ZNF195	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00chr11:3392167-3400452"	NA	inter
CUST_24270_PI429285431	0.8996189	A	0.895528	A	1.0028396199054	0	lncRNA	25821-1_{1..553}	lnc-RP11-422N16.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-422N16.3.1-1:1	chr8	110986541	110987093	+	lnc-RP11-422N16.3.1-1	lnc-RP11-422N16.3.1-1:1	ENSG00000255402.1	RP11-696P8.2	KCNV1	"hg19_refFlat_KCNV1:range=chr8:110980317-1109866175'pad=0,hg19_refFlat_KCNV1:range=chr8:110980317-1109866175'pad=0 3'pad=0 strand=- repeatMasking=none,-98.60chr8:110979233-110986959"	NA	inner
CUST_9016_PI429285431	5.2323656	P	2.8021283	A	5.38982077289804	0	lncRNA	10543-1_{1..2392}	lnc-MED7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MED7-1:1	chr5	156562992	156565383	-	lnc-MED7-1	lnc-MED7-1:1	ENSG00000250783	ENST00000507127	MED7	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50chr5:156565451-156569921"	NA	inter
CUST_15565_PI429285431	0.9230075	A	0.92309177	A	0.999941590193013	0	lncRNA	17249-2_{3001..5151}	lnc-ARFGEF2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARFGEF2-2:4	chr20	 47107047	 47109197	+	lnc-ARFGEF2-2	lnc-ARFGEF2-2:4	XLOC_013552	linc-ARFGEF2-3	NA	NA	NA	inter
CUST_28915_PI429285431	0.8989172	A	1.012783	A	0.924108529349236	0	lncRNA	30632-1_{1..955}	n326340|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000083615|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000083615|-0.8510820|-0.1988664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326340|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000083615|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000083615|-0.8510820|-0.1988664	chr1	167022800	167023754	+	NA	NA	NA	NA	GPA33	NA	chr1:167022082-167038748	inner
CUST_6796_PI429285431	0.89927614	A	0.9030117	A	0.997414056445581	0	lncRNA	6744-1_{1..864}	"transcript_id ""ENST00000436373.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436373.1"" | genecode_v17"	chr21	 21629065	 21629928	-	ENSG00000233236.1	ENST00000436373.1	AP001171.1	AP001171.1-001	NA	NA	NA	inter
LNCA_21_P0006202	2.6137152	A	3.1118019	P	0.708045167245052	0	lncRNA	TCONS_00016119	NA	NA	NA	NA	XLOC_007506	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007506), lincRNA [TCONS_00016119]"	chr9:110103301-110105192	hs|9q31.2	Agilent_HUMAN_G3V2	TCONS_00016119	TCONS_00016119	chr9	110103301	110105192	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11044_PI429285431	2.9382625	A	3.0866966	P	0.90222921018476	0	lncRNA	12591-1_{1..204}	lnc-RP11-467M13.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-467M13.1.1-1:1	chr16	 16550844	 16551047	+	lnc-RP11-467M13.1.1-1	lnc-RP11-467M13.1.1-1:1	XLOC_011654	linc-TMC7-2	NA	NA	NA	inter
CUST_14024_PI429285431	7.4159293	P	7.0502977	P	1.28844557691086	0	lncRNA	15673-1_{1..3000}	lnc-TCF12-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF12-1:4	chr15	 57595298	 57598297	+	lnc-TCF12-1	lnc-TCF12-1:4	XLOC_011264	linc-CGNL1-2	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80"	NA	inter
CUST_11894_PI429285431	0.9020107	A	0.89531535	A	1.00465164845813	0	lncRNA	13476-1_{1..1390}	lnc-ACTR2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACTR2-3:2	chr2	 65957633	 65959022	+	lnc-ACTR2-3	lnc-ACTR2-3:2	XLOC_001504	linc-MEIS1-4	NA	NA	NA	inter
CUST_21213_PI429285431	2.0381215	A	1.7134111	A	1.25241300973374	0	lncRNA	22838-1_{1..700}	lnc-KIAA1257-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1257-1:2	chr3	128584125	128584824	-	lnc-KIAA1257-1	lnc-KIAA1257-1:2	ENSG00000231305.3	RP11-723O4.2	NA	NA	NA	inter
CUST_1191_PI429285431	1.2706711	A	1.1883858	A	1.05869373603929	0	lncRNA	1182-1_{1..565}	"transcript_id ""ENST00000414394.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414394.1"" | genecode_v17"	chr2	193494645	193495209	+	ENSG00000229395.1	ENST00000414394.1	AC013401.1	AC013401.1-001	NA	NA	NA	inter
CUST_34888_PI429285431	4.496919	P	4.7291126	P	0.851339456037159	0	lncRNA	36313-1_{1..890}	n341803|BC058547|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4281|NULL|-0.9054490|-0.1543043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341803|BC058547|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4281|NULL|-0.9054490|-0.1543043	chr9	137711260	137712149	-	NA	NA	NA	NA	COL5A1	"hg19_refFlat_COL5A1:range=chr9:137534034-1377341495'pad=0,hg19_refFlat_COL5A1:range=chr9:137534034-1377341495'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.60chr9:137701260-137736689"	NA	inner
CUST_14775_PI429285431	0.9191157	A	1.3992847	A	0.716893640824839	0	lncRNA	16436-1_{1..486}	lnc-RP3-368B9.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP3-368B9.1.1-2:1	chr4	  3547241	  3547726	+	lnc-RP3-368B9.1.1-2	lnc-RP3-368B9.1.1-2:1	XLOC_003427	linc-ADRA2C-5	NA	NA	NA	inter
CUST_34666_PI429285431	1.1603869	A	1.096649	A	1.04517020283414	0	lncRNA	36118-1_{1..2859}	n341569|BX649145|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4040|NULL|-0.9791890|-0.2954985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341569|BX649145|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4040|NULL|-0.9791890|-0.2954985	chr8	102179032	102181890	-	NA	NA	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30"	NA	inter
CUST_6839_PI429285431	0.8904346	A	0.9202646	A	0.9795357143979	0	lncRNA	6787-1_{1..3000}	"transcript_id ""ENST00000453420.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453420.1"" | genecode_v17"	chr21	 29488413	 29491412	-	ENSG00000236532.1	ENST00000453420.1	AL035610.2	AL035610.2-001	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.01;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
CUST_28629_PI429285431	0.8987273	A	0.90012467	A	0.999031885849478	0	lncRNA	30314-1_{1..303}	n325998|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047701|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047701|-0.9639720|-0.2797448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325998|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047701|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047701|-0.9639720|-0.2797448	chr10	 43236052	 43236354	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15489_PI429285431	0.91184473	A	0.9060472	A	1.00402662673846	0	lncRNA	17178-1_{1..947}	lnc-CDH4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH4-2:2	chr20	 59658382	 59659328	+	lnc-CDH4-2	lnc-CDH4-2:2	XLOC_013594	linc-CDH4-1	NA	NA	NA	inter
CUST_21314_PI429285431	7.4671087	P	7.347104	P	1.08673840288769	0	lncRNA	22937-1_{1..722}	lnc-KDM6A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KDM6A-1:1	chrX	 45192755	 45193476	+	lnc-KDM6A-1	lnc-KDM6A-1:1	ENSG00000229491.1	RP11-342D14.1	NA	NA	NA	inter
CUST_21341_PI429285431	6.138981	P	6.6789618	P	0.687780062278936	0	lncRNA	22964-1_{1..1161}	lnc-EVX1-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-EVX1-7:2	chr7	 27210927	 27212087	+	lnc-EVX1-7	lnc-EVX1-7:2	ENSG00000253187.2	HOXA-AS4	HOXA10	NA	chr7:27210210-27219880	inner
CUST_50085_PI429285431	6.5156193	P	7.0835543	P	0.674581659469584	0	lncRNA	53819-1_{1..653}	hg19_lincRNAsTranscripts_TCONS_l2_00028339 range=chr8:100008717-100025293 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028339 range=chr8:100008717-100025293 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	100008717	100009369	-	NA	NA	NA	NA	VPS13B	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr8:100025494-100035293"	NA	inter
CUST_35947_PI429285431	3.6550415	P	2.4344678	A	2.33039368965246	0	lncRNA	37308-1_{1..3000}	n344583|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_131|NULL|-1.2937000|-0.1534478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344583|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_131|NULL|-1.2937000|-0.1534478	chrX	114957339	114960338	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16752_PI429285431	4.549876	P	4.800078	P	0.840778684770133	0	lncRNA	18460-1_{1..313}	lnc-ZNF74-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF74-1:7	chr22	 20853528	 20853840	+	lnc-ZNF74-1	lnc-ZNF74-1:7	XLOC_014159	linc-MED15	KLHL22	NA	chr22:20843528-20850170	inter
CUST_15777_PI429285431	0.90676117	A	0.89756197	A	1.00639677205705	0	lncRNA	17467-1_{1..383}	lnc-WRN-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRN-4:2	chr8	 31144702	 31145084	+	lnc-WRN-4	lnc-WRN-4:2	XLOC_006764	linc-NRG1-3	NA	NA	NA	inter
CUST_5732_PI429285431	2.0371056	A	2.6723475	A	0.643832852766892	0	lncRNA	5655-2_{3001..5258}	"transcript_id ""ENST00000577761.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577761.1"" | genecode_v17"	chr17	 12724314	 12726571	+	ENSG00000266878.1	ENST00000577761.1	RP11-1090M7.2	RP11-1090M7.2-001	ARHGAP44	NA	chr17:12711314-12736571	inner
CUST_51235_PI429285431	4.51685	P	5.5648375	P	0.483642355230499	0	lncRNA	54849-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008922 range=chr15:23095153-23158364 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008922 range=chr15:23095153-23158364 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 23095153	 23098152	-	NA	NA	NA	NA	NIPA1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_GOLGA6L6:range=chr15:20739497-207470235'pad=0,hg19_refFlat_GOLGA6L6:range=chr15:20739497-207470235'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_GOLGA6L1:range=chr15:22736337-227442785'pad=0,hg19_refFlat_GOLGA6L1:range=chr15:22736337-227442785'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-62.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_LOC440243:range=chr15:23571396-235792885'pad=0,hg19_refFlat_LOC440243:range=chr15:23571396-235792885'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40chr15:23085153-23086843"	NA	inter
CUST_36526_PI429285431	3.1393938	P	2.584429	A	1.46913278779223	0	lncRNA	37725-1_{1..474}	n345027|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_576|NULL|-1.2946000|-0.2539043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345027|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_576|NULL|-1.2946000|-0.2539043	chr8	128655772	128656245	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35624_PI429285431	0.9187755	A	1.4438695	A	0.694913830755207	0	lncRNA	37039-1_{1..916}	n342767|AL137356|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5270|NULL|-0.6083500|-0.2410783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342767|AL137356|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5270|NULL|-0.6083500|-0.2410783	chr11	 64418766	 64419681	+	NA	NA	NA	NA	NRXN2	"hg19_refFlat_NRXN2:range=chr11:64374668-644811715'pad=0,hg19_refFlat_NRXN2:range=chr11:64374668-644811715'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60chr11:64408766-64433783"	NA	inner
CUST_36183_PI429285431	1.5414913	A	1.4837744	A	1.04081733809212	0	lncRNA	37448-6_{15001..18000}	n344736|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_285|NULL|-1.6131600|-0.3223694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344736|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_285|NULL|-1.6131600|-0.3223694	chrX	 45619650	 45622649	-	NA	NA	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-22.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10"	NA	inter
LNCA_33_P3358432	2.2929041	A	3.1406236	P	0.555662390032835	0	lncRNA	XR_109943	XR_109943	XR_109943	100507073	Hs.667940	LOC100507073	uncharacterized LOC100507073	NA	THC2621272	NA	"PREDICTED: Homo sapiens hypothetical LOC100507073 (LOC100507073), miscRNA [XR_109943]"	chr2:66922830-66922889	hs|2p14	Agilent_HUMAN_G3V2	XR_109943	XR_109943	chr2	 66922830	 66922889	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51065_PI429285431	0.90498894	A	0.8969188	A	1.00560946927077	0	lncRNA	54702-1_{1..1373}	hg19_lincRNAsTranscripts_TCONS_l2_00006770 range=chr13:30727523-30734612 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006770 range=chr13:30727523-30734612 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 30727523	 30728895	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30344_PI429285431	1.8729877	A	2.155963	A	0.82189425860849	0	lncRNA	32120-1_{1..656}	n335273|AY670725|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000256008|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000256008|-0.9835210|-0.1074304	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335273|AY670725|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000256008|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000256008|-0.9835210|-0.1074304	chr14	106322021	106322676	+	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106859077	inter
CUST_23609_PI429285431	0.9023899	A	0.90404534	A	0.998853194516001	0	lncRNA	25176-1_{1..437}	lnc-AC040934.1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC040934.1-3:3	chr17	 45726762	 45727198	-	lnc-AC040934.1-3	lnc-AC040934.1-3:3	ENSG00000263766.1	RP11-580I16.2	KPNB1	"hg19_refFlat_NPEPPS:range=chr17:45608667-456992865'pad=0,hg19_refFlat_NPEPPS:range=chr17:45608667-456992865'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70chr17:45727275-45736768"	NA	inter
CUST_38983_PI429285431	0.9187875	A	0.91553175	A	1.00225926222856	0	lncRNA	39966-1_{1..2045}	n385222|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003uey.1||0.1973770|-0.1929499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385222|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003uey.1||0.1973770|-0.1929499	chr7	 75935608	 75937652	+	NA	NA	NA	NA	HSPB1	"hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-60.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10chr7:75931875-75933614"	NA	inter
CUST_14516_PI429285431	6.693427	P	6.569267	P	1.08987297629199	0	lncRNA	16182-1_{1..1152}	lnc-SIPA1L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIPA1L2-1:1	chr1	232878113	232879264	-	lnc-SIPA1L2-1	lnc-SIPA1L2-1:1	XLOC_001259	linc-SIPA1L2	NA	NA	NA	inter
CUST_50263_PI429285431	0.8926431	A	0.9075204	A	0.989740829460961	0	lncRNA	53986-1_{1..965}	hg19_lincRNAsTranscripts_TCONS_l2_00028790 range=chr9:69065475-69068114 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028790 range=chr9:69065475-69068114 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69065475	 69066439	+	NA	NA	NA	NA	LOC100507370	NA	chr9:69065490-69078114	inter
CUST_38575_PI429285431	0.9134533	A	0.90737575	A	1.0042215222739	0	lncRNA	39587-1_{1..3000}	n383554|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002qgs.1||2.6988000|-0.1765929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383554|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002qgs.1||2.6988000|-0.1765929	chr19	 55219600	 55222599	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006219	2.8233366	A	3.8220372	P	0.500450540588175	0	lncRNA	TCONS_00016145	NA	NA	NA	NA	XLOC_007542	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007542), lincRNA [TCONS_00016145]"	chr9:121738686-121738745	hs|9q33.1	Agilent_HUMAN_G3V2	TCONS_00016145	TCONS_00016145	chr9	121738686	121738745	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30063_PI429285431	7.2453337	P	7.533382	P	0.819009277781996	0	lncRNA	31832-1_{1..328}	n334579|U68067|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221037|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221037|-1.2208900|-0.1181003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334579|U68067|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221037|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221037|-1.2208900|-0.1181003	chr6	152128454	152128781	+	NA	NA	NA	NA	ESR1	NA	chr6:152118454-152139116	inner
CUST_10503_PI429285431	0.9142991	A	1.0050213	A	0.939052550379683	0	lncRNA	12030-1_{1..3000}	lnc-PANK1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-PANK1-2:3	chr10	 91457527	 91460526	-	lnc-PANK1-2	lnc-PANK1-2:3	XLOC_008897	linc-PANK1-2	KIF20B	NA	chr10:91461367-91467685	inter
CUST_1970_PI429285431	4.1779327	P	4.322836	P	0.904439997729789	0	lncRNA	1962-1_{1..469}	"transcript_id ""ENST00000504509.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504509.1"" | genecode_v17"	chr4	171195070	171195538	+	ENSG00000250266.1	ENST00000504509.1	RP11-789C1.1	RP11-789C1.1-001	NA	NA	NA	inter
CUST_20200_PI429285431	0.91707325	A	0.9011446	A	1.01110207449866	0	lncRNA	21844-1_{1..506}	lnc-PPIF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPIF-1:1	chr10	 81168784	 81169289	+	lnc-PPIF-1	lnc-PPIF-1:1	ENSG00000235426.1	RP11-342M3.5	ZCCHC24	NA	chr10:81158784-81179030	inner
CUST_36145_PI429285431	3.5952814	P	3.579527	P	1.01097996005863	0	lncRNA	37422-9_{24001..27000}	n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	chr8	128113803	128116802	-	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00"	NA	inter
CUST_18508_PI429285431	0.979545	A	1.5541551	A	0.671467696444782	0	lncRNA	20222-2_{3001..3635}	lnc-C8orf22-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-C8orf22-5:2	chr8	 49703197	 49703831	+	lnc-C8orf22-5	lnc-C8orf22-5:2	ENSG00000233858	AC026904.1	NA	NA	NA	inter
CUST_40680_PI429285431	0.908024	A	0.8960189	A	1.00835601947787	0	lncRNA	41415-1_{1..599}	n410237|NR_037171_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037171_6||-0.9941030|-0.2683678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410237|NR_037171_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037171_6||-0.9941030|-0.2683678	chr6	  3468303	  3468901	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50500_PI429285431	6.6617117	P	6.6574264	P	1.00297475945455	0	lncRNA	54196-1_{1..636}	hg19_lincRNAsTranscripts_TCONS_l2_00030569 range=chrX:103315111-103316578 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030569 range=chrX:103315111-103316578 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	103315111	103315746	-	NA	NA	NA	NA	MCART6	NA	chrX:103315219-103326578	inter
CUST_3043_PI429285431	15.03887	P	15.317348	P	0.824460339564165	0	lncRNA	3022-1_{1..443}	"transcript_id ""ENST00000520375.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520375.1"" | genecode_v17"	chr8	 23583844	 23584286	-	ENSG00000254002.1	ENST00000520375.1	RP11-213G6.2	RP11-213G6.2-001	NA	NA	NA	inter
CUST_1677_PI429285431	2.8848107	A	3.071918	P	0.878365137671927	0	lncRNA	1661-1_{1..632}	"transcript_id ""ENST00000602641.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602641.1"" | genecode_v17"	chr4	  3546282	  3546913	+	ENSG00000270090.1	ENST00000602641.1	RP11-529E10.7	RP11-529E10.7-002	NA	NA	NA	inter
CUST_28678_PI429285431	0.9279661	A	0.9240164	A	1.00274147440609	0	lncRNA	30374-1_{1..254}	n326062|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046744|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046744|-0.6787960|-0.1585426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326062|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046744|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046744|-0.6787960|-0.1585426	chr10	 10868612	 10868865	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37946_PI429285431	0.9278232	A	1.4686773	A	0.687363857497456	0	lncRNA	39036-1_{1..2594}	n346493|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2043|NULL|-1.3057100|-0.3171962	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346493|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2043|NULL|-1.3057100|-0.3171962	chr2	130783566	130786159	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90"	NA	inter
LNCA_21_P0004401	0.9557903	A	0.9226687	A	1.02322371024691	0	lncRNA	TCONS_00010352	NA	NA	NA	NA	XLOC_004841	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004841), lincRNA [TCONS_00010352]"	chr5:60617412-60617353	hs|5q12.1	Agilent_HUMAN_G3V2	TCONS_00010352	TCONS_00010352	chr5	 60617353	 60617412	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13317_PI429285431	9.987343	P	9.815334	P	1.12662625673568	0	lncRNA	14951-1_{1..618}	lnc-EPHA6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPHA6-1:2	chr3	 96336693	 96337310	+	lnc-EPHA6-1	lnc-EPHA6-1:2	XLOC_002730	linc-EPHA6-1	NA	"hg19_refFlat_MTRNR2L4:range=chr16:3421816-34219025'pad=0,hg19_refFlat_MTRNR2L4:range=chr16:3421816-34219025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_MTRNR2L10:range=chrX:55208353-552084275'pad=0,hg19_refFlat_MTRNR2L10:range=chrX:55208353-552084275'pad=0 3'pad=0 strand=- repeatMasking=none,-62.60;hg19_refFlat_MTRNR2L8:range=chr11:10529699-105297735'pad=0,hg19_refFlat_MTRNR2L8:range=chr11:10529699-105297735'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MTRNR2L6:range=chr7:142375063-1423751375'pad=0,hg19_refFlat_MTRNR2L6:range=chr7:142375063-1423751375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MTRNR2L2:range=chr5:79945819-799459055'pad=0,hg19_refFlat_MTRNR2L2:range=chr5:79945819-799459055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MTRNR2L5:range=chr10:57359660-573597345'pad=0,hg19_refFlat_MTRNR2L5:range=chr10:57359660-573597345'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MTRNR2L1:range=chr17:22023388-220234625'pad=0,hg19_refFlat_MTRNR2L1:range=chr17:22023388-220234625'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MTRNR2L7:range=chr10:37890898-378909725'pad=0,hg19_refFlat_MTRNR2L7:range=chr10:37890898-378909725'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_MTRNR2L3:range=chr20:55934021-559340955'pad=0,hg19_refFlat_MTRNR2L3:range=chr20:55934021-559340955'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40"	NA	inter
CUST_51905_PI429285431	1.2099603	A	0.924285	A	1.21898071344113	0	lncRNA	55449-2_{3001..3403}	hg19_lincRNAsTranscripts_TCONS_l2_00013262 range=chr19:58521909-58537013 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013262 range=chr19:58521909-58537013 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 58524909	 58525311	-	NA	NA	NA	NA	ZNF606	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.21;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-20.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-55.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90chr19:58511909-58514714"	NA	inter
CUST_17949_PI429285431	2.1244273	A	3.2543259	P	0.456947840621755	0	lncRNA	19680-1_{1..739}	lnc-RAD23B-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAD23B-5:4	chr9	110276945	110277683	+	lnc-RAD23B-5	lnc-RAD23B-5:4	XLOC_007507	linc-ACTL7A-9	NA	NA	NA	inter
CUST_1458_PI429285431	6.5569243	P	6.705717	P	0.902004977634538	0	lncRNA	1447-1_{1..427}	"transcript_id ""ENST00000510244.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510244.1"" | genecode_v17"	chr3	125626848	125627274	-	ENSG00000248787.1	ENST00000510244.1	RP11-666A20.4	RP11-666A20.4-001	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_8073_PI429285431	2.1836295	A	0.9194636	A	2.40188303910842	0	lncRNA	9679-2_{3001..6000}	lnc-INADL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-INADL-2:1	chr1	 61596091	 61599090	+	lnc-INADL-2	lnc-INADL-2:1	ENSG00000248141	ENST00000514954	NFIA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30chr1:61583091-61607315"	NA	inner
LNCA_21_P0010853	0.98151505	A	0.92688155	A	1.03859522666877	0	lncRNA	TCONS_l2_00003376	NA	NA	NA	NA	XLOC_l2_001841	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001841), lincRNA [TCONS_l2_00003376]"	chr10:5320054-5319995	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_l2_00003376	TCONS_l2_00003376	chr10	  5319995	  5320054	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45662_PI429285431	1.2309203	A	1.2769908	A	0.968570857037959	0	lncRNA	50038-1_{1..706}	"gi|397139381|ref|XR_110437.2| PREDICTED: Homo sapiens uncharacterized LOC100507633 (LOC100507633), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139381|ref|XR_110437.2| PREDICTED: Homo sapiens uncharacterized LOC100507633 (LOC100507633), misc_RNA"	Chr10	 93542596	 93543301	-	100507633	XR_110437.3	NA	NA	NA	NA	NA	inter
CUST_20709_PI429285431	0.92666554	A	0.9134508	A	1.00920183875203	0	lncRNA	22344-1_{1..769}	lnc-ARMC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ARMC1-2:1	chr8	 65646901	 65647669	-	lnc-ARMC1-2	lnc-ARMC1-2:1	ENSG00000254330.1	RP11-1D12.1	CYP7B1	NA	chr8:65636901-65657016	inner
CUST_12673_PI429285431	0.9161353	A	0.90398514	A	1.00845741268569	0	lncRNA	14290-1_{1..497}	lnc-NKIRAS1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-NKIRAS1-3:4	chr3	 23243883	 23244379	-	lnc-NKIRAS1-3	lnc-NKIRAS1-3:4	XLOC_003065	linc-ZNF385D-1	UBE2E2	NA	chr3:23244784-23254034	inter
CUST_11225_PI429285431	1.1346695	A	1.0854709	A	1.03469000613832	0	lncRNA	12783-1_{1..449}	lnc-CISD2-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CISD2-3:5	chr4	104360782	104361230	+	lnc-CISD2-3	lnc-CISD2-3:5	XLOC_003629	linc-TET2-5	NA	NA	NA	inter
CUST_18018_PI429285431	1.8168503	A	1.4157693	A	1.32049697813311	0	lncRNA	19751-1_{1..652}	lnc-MCFD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MCFD2-1:1	chr2	 47080533	 47081184	-	lnc-MCFD2-1	lnc-MCFD2-1:1	XLOC_002089	linc-PIGF-4	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20"	NA	inter
CUST_37467_PI429285431	2.2393289	A	2.5539274	A	0.804074732474913	0	lncRNA	38566-1_{1..236}	n345922|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1471|NULL|-1.2970100|-0.2663757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345922|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1471|NULL|-1.2970100|-0.2663757	chr2	 28967210	 28967445	-	NA	NA	NA	NA	PPP1CB	NA	chr2:28974614-28981829	inter
CUST_19262_PI429285431	6.1697655	P	6.3817344	P	0.863358169679955	0	lncRNA	20930-1_{1..425}	lnc-RAI1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAI1-1:1	chr17	 17513650	 17514074	+	lnc-RAI1-1	lnc-RAI1-1:1	ENSG00000264666.1	RP11-524F11.2	NA	"hg19_refFlat_PEMT:range=chr17:17409148-174949405'pad=0,hg19_refFlat_PEMT:range=chr17:17409148-174949405'pad=0 3'pad=0 strand=- repeatMasking=none,-100.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PEMT:range=chr17:17409105-174949405'pad=0,hg19_refFlat_PEMT:range=chr17:17409105-174949405'pad=0 3'pad=0 strand=- repeatMasking=none,-100.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60"	NA	inter
CUST_10003_PI429285431	8.229478	P	7.880341	P	1.27379843096474	0	lncRNA	11529-1_{1..1611}	lnc-LMF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LMF1-1:1	chr16	  1041865	  1043475	-	lnc-LMF1-1	lnc-LMF1-1:1	XLOC_011849	linc-LMF1	SOX8	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40chr16:1031865-1036979"	NA	inter
LNCA_21_P0001266	2.1910286	A	2.3797307	A	0.877394701984624	0	lncRNA	TCONS_00000846	NA	NA	NA	NA	XLOC_000061	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000061), lincRNA [TCONS_00000846]"	chr1:16510413-16510472	hs|1p36.13	Agilent_HUMAN_G3V2	TCONS_00000846	TCONS_00000846	chr1	 16510413	 16510472	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46429_PI429285431	0.90612614	A	0.9064426	A	0.999780670699429	0	lncRNA	50640-2_{3001..4303}	"gi|223029496|ref|NR_026771.1| Homo sapiens uncharacterized LOC26082 (DKFZP434L187), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223029496|ref|NR_026771.1| Homo sapiens uncharacterized LOC26082 (DKFZP434L187), non-coding RNA"	Chr15	 30491239	 30492541	+	26082	NR_026771.1	NA	NA	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00"	NA	inter
CUST_48185_PI429285431	11.124559	P	10.666914	P	1.3732982681232	0	lncRNA	52048-1_{1..723}	"gi|341914360|ref|XR_133281.1| PREDICTED: Homo sapiens uncharacterized LOC100653309 (LOC100653309), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341914360|ref|XR_133281.1| PREDICTED: Homo sapiens uncharacterized LOC100653309 (LOC100653309), misc_RNA"	NA	NA	NA	NA	NA	XR_133281.1	NA	NA	NA	NA	NA	Unknown
CUST_13763_PI429285431	2.4117832	A	1.3677576	A	2.06197322608871	0	lncRNA	15406-1_{1..830}	lnc-WRAP73-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRAP73-1:1	chr1	  3541196	  3542025	-	lnc-WRAP73-1	lnc-WRAP73-1:1	XLOC_000683	linc-MEGF6	WRAP73	NA	chr1:3547331-3551333	inter
CUST_37782_PI429285431	0.9232765	A	0.91050714	A	1.00889033221098	0	lncRNA	38881-1_{1..622}	n346295|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1845|NULL|-1.3700300|-0.3546746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346295|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1845|NULL|-1.3700300|-0.3546746	chr3	148941863	148942484	+	NA	NA	NA	NA	CP	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70chr3:148931863-148939832"	NA	inter
CUST_16987_PI429285431	7.5495996	P	7.6080666	P	0.960283969973049	0	lncRNA	18696-1_{1..342}	lnc-LSG1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LSG1-1:2	chr3	194489365	194489706	-	lnc-LSG1-1	lnc-LSG1-1:2	XLOC_003386	linc-LSG1-1	NA	NA	NA	inter
CUST_50543_PI429285431	1.057781	A	0.8971668	A	1.11776290310768	0	lncRNA	54235-1_{1..509}	hg19_lincRNAsTranscripts_TCONS_l2_00030640 range=chrX:154564518-154584191 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030640 range=chrX:154564518-154584191 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	154564518	154565026	-	NA	NA	NA	NA	CLIC2	NA	chrX:154554518-154563986	inter
CUST_50065_PI429285431	0.9203684	A	0.9087076	A	1.00811540344747	0	lncRNA	53798-1_{1..2174}	hg19_lincRNAsTranscripts_TCONS_l2_00027787 range=chr8:58134131-58145802 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027787 range=chr8:58134131-58145802 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 58134131	 58136304	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29781_PI429285431	1.7358733	A	1.7061566	A	1.02081165067346	0	lncRNA	31544-1_{1..348}	n333479|BC028007|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091442|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091442|-0.9034680|-0.3287388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333479|BC028007|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091442|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091442|-0.9034680|-0.3287388	chr20	 10654276	 10654623	-	NA	NA	NA	NA	JAG1	NA	chr20:10644276-10654694	inner
CUST_1798_PI429285431	1.0525713	A	1.223831	A	0.888066920240234	0	lncRNA	1785-1_{1..455}	"transcript_id ""ENST00000508147.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508147.1"" | genecode_v17"	chr4	 74375916	 74376370	+	ENSG00000250436.1	ENST00000508147.1	RP11-622A1.2	RP11-622A1.2-002	AFM	NA	chr4:74365916-74369718	inter
CUST_19013_PI429285431	3.1564598	A	3.6048741	A	0.732847895800911	0	lncRNA	20703-1_{1..851}	lnc-NTSR2-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NTSR2-5:4	chr2	 13146996	 13147846	-	lnc-NTSR2-5	lnc-NTSR2-5:4	ENSG00000225649	AC064875.2	NA	NA	NA	inter
CUST_4559_PI429285431	1.3434657	A	0.9113699	A	1.34919212244415	0	lncRNA	4508-1_{1..585}	"transcript_id ""ENST00000575845.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000575845.1"" | genecode_v17"	chr13	 23492730	 23493314	+	ENSG00000262198.1	ENST00000575845.1	RP11-124N19.3	RP11-124N19.3-001	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.40"	NA	inter
LNCA_21_P0005499	0.92316103	A	1.7493342	A	0.564023363644893	0	lncRNA	TCONS_00013823	NA	NA	NA	NA	XLOC_006462	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006462), lincRNA [TCONS_00013823]"	chr7:62452993-62441319	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_00013823	TCONS_00013823	chr7	 62441319	 62452993	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23780_PI429285431	0.9228383	A	1.0153556	A	0.937884843488918	0	lncRNA	25345-1_{1..387}	lnc-PRB1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PRB1-1:5	chr12	 11589237	 11589623	-	lnc-PRB1-1	lnc-PRB1-1:5	ENSG00000255790.1	RP11-711K1.7	NA	NA	NA	inter
LNCA_21_P0002215	0.9248794	A	0.9234185	A	1.00101313158751	0	lncRNA	ENST00000491538	NA	NA	NA	NA	C2orf73	chromosome 2 open reading frame 73	ENST00000491538	THC2728663	NA	"BROAD Institute lincRNA (XLOC_001473), lincRNA [TCONS_00003679]"	chr2:54610676-54610735	hs|2p16.2	Agilent_HUMAN_G3V2	ENST00000491538	ENST00000491538	chr2	 54610676	 54610735	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15179_PI429285431	1.4368676	A	2.351822	A	0.530360633798984	0	lncRNA	16844-1_{1..773}	lnc-TLR3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TLR3-1:1	chr4	186939607	186940379	+	lnc-TLR3-1	lnc-TLR3-1:1	XLOC_003820	linc-TLR3-1	NA	NA	NA	inter
CUST_29038_PI429285431	0.90377414	A	0.91035634	A	0.995447958716844	0	lncRNA	30767-1_{1..352}	n326528|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029326|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029326|-0.8879220|-0.4750556	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326528|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029326|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029326|-0.8879220|-0.4750556	chr1	 94383254	 94383605	+	NA	NA	NA	NA	GCLM	NA	chr1:94373254-94375012	inter
CUST_18064_PI429285431	5.195352	P	5.6115584	P	0.749392580925425	0	lncRNA	19799-1_{1..352}	lnc-ATP13A4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP13A4-2:1	chr3	193555141	193555492	-	lnc-ATP13A4-2	lnc-ATP13A4-2:1	XLOC_003378	linc-ATP13A4-2	NA	NA	NA	inter
CUST_13014_PI429285431	1.9553055	A	2.1221848	A	0.890767421643586	0	lncRNA	14640-1_{1..981}	lnc-CNIH3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CNIH3-1:1	chr1	224966875	224967855	+	lnc-CNIH3-1	lnc-CNIH3-1:1	XLOC_000584	linc-DNAH14	NA	NA	NA	inter
CUST_49618_PI429285431	0.9187017	A	0.9153925	A	1.00229639533599	0	lncRNA	53405-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00025633 range=chr7:6676931-6696870 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025633 range=chr7:6676931-6696870 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  6679931	  6682930	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21764_PI429285431	0.9082817	A	0.91611063	A	0.994588096643924	0	lncRNA	23374-1_{1..457}	lnc-AL078585.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL078585.1-1:3	chr6	163467616	163468072	-	lnc-AL078585.1-1	lnc-AL078585.1-1:3	ENSG00000225437.1	RP1-257A15.1	PACRG	NA	chr6:163457616-163477717	inner
CUST_18612_PI429285431	0.8929161	A	0.90782094	A	0.989721936208049	0	lncRNA	20319-1_{1..502}	lnc-ETV6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ETV6-1:2	chr12	 11709870	 11710371	+	lnc-ETV6-1	lnc-ETV6-1:2	ENSG00000247157	RP11-434C1.1	NA	NA	NA	inter
CUST_50954_PI429285431	1.2196074	A	1.8396213	A	0.650664658702173	0	lncRNA	54595-1_{1..1294}	hg19_lincRNAsTranscripts_TCONS_l2_00006311 range=chr12:70612843-70616238 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006311 range=chr12:70612843-70616238 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 70612843	 70614136	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39498_PI429285431	2.9616494	A	2.886229	A	1.05366802911263	0	lncRNA	40445-1_{1..1999}	n387230|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ahz.1||3.4504700|-0.1535262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387230|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ahz.1||3.4504700|-0.1535262	chr22	 21400248	 21402246	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12283_PI429285431	1.0303742	A	1.259108	A	0.853383546316013	0	lncRNA	13892-1_{1..484}	lnc-PCDH7-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH7-8:1	chr4	 29287979	 29288462	+	lnc-PCDH7-8	lnc-PCDH7-8:1	XLOC_003492	linc-PCDH7-1	NA	NA	NA	inter
CUST_42095_PI429285431	4.82111	P	5.375579	P	0.680907627780937	0	lncRNA	44036-1_{1..150}	ENST00000516378 ncrna:miRNA chromosome:GRCh37:11:1941339:1941488:-1 gene:ENSG00000252187 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516378 ncrna:miRNA chromosome:GRCh37:11:1941339:1941488:-1 gene:ENSG00000252187 gene_biotype:miRNA transcript_biotype:miRNA	chr11	  1941339	  1941488	-	ENSG00000252187	ENST00000516378	NA	NA	TNNT3	NA	chr11:1940799-1951488	inner
CUST_25261_PI429285431	3.8396366	P	3.5687926	P	1.20651345120911	0	lncRNA	26792-1_{1..1713}	lnc-RP11-809H16.2.1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-809H16.2.1-2:4	chr15	 69387056	 69388768	+	lnc-RP11-809H16.2.1-2	lnc-RP11-809H16.2.1-2:4	ENSG00000212766.4	LINC00277	NA	NA	NA	inter
CUST_44720_PI429285431	8.597355	P	8.744794	P	0.902851738137498	0	lncRNA	49275-1_{1..728}	"gi|371873628|ref|NR_045828.1| Homo sapiens apolipoprotein M (APOM), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371873628|ref|NR_045828.1| Homo sapiens apolipoprotein M (APOM), transcript variant 3, non-coding RNA"	NT_167249.1	  2950986	  2951713	+	55937	NR_045828.1	NA	NA	NA	NA	NA	Unknown
CUST_32460_PI429285431	2.6198254	A	1.7164137	A	1.87048409695278	0	lncRNA	34131-1_{1..1953}	n339062|AK001864|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1491|NULL|-0.8128020|-0.2978675	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339062|AK001864|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1491|NULL|-0.8128020|-0.2978675	chr2	192018843	192020795	-	NA	NA	NA	NA	STAT4	NA	chr2:192008843-192015925	inter
CUST_50913_PI429285431	1.0820594	A	0.9025621	A	1.13248920623705	0	lncRNA	54554-1_{1..451}	hg19_lincRNAsTranscripts_TCONS_l2_00006118 range=chr12:9549679-9550529 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006118 range=chr12:9549679-9550529 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  9549679	  9550129	-	NA	NA	NA	NA	LOC728715	NA	chr12:9549658-9555094	inter
CUST_41150_PI429285431	0.91692597	A	0.9962066	A	0.946529496404966	0	lncRNA	41953-1_{1..110}	ENST00000384881 ncrna:miRNA chromosome:GRCh37:19:13985513:13985622:1 gene:ENSG00000207613 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384881 ncrna:miRNA chromosome:GRCh37:19:13985513:13985622:1 gene:ENSG00000207613 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 13985513	 13985622	+	ENSG00000207613	ENST00000384881	NA	NA	C19orf57	NA	chr19:13993168-13995622	inter
CUST_15771_PI429285431	0.9073998	A	0.9002346	A	1.00497889187212	0	lncRNA	17460-1_{1..925}	lnc-NRAP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NRAP-2:1	chr10	115251752	115252676	-	lnc-NRAP-2	lnc-NRAP-2:1	XLOC_008955	linc-ZDHHC6-2	NA	NA	NA	inter
CUST_28704_PI429285431	0.90883267	A	0.91094863	A	0.998534403329132	0	lncRNA	30404-1_{1..846}	n326093|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046512|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046512|-1.1916000|-0.4148623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326093|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046512|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046512|-1.1916000|-0.4148623	chr10	  4683008	  4683853	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013606	2.5121887	A	3.242768	P	0.602661872308277	0	lncRNA	ENST00000462148	XM_001715154	XM_001715154	NA	Hs.32194	XLOC_l2_015041	NA	ENST00000462148	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015041), lincRNA [TCONS_l2_00029088]"	chr9:133247698-133247757	hs|9q34.11	Agilent_HUMAN_G3V2	ENST00000462148	ENST00000462148	chr9	133247698	133247757	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36601_PI429285431	3.0105598	A	2.551462	A	1.37468188181539	0	lncRNA	37795-1_{1..541}	n345098|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_647|NULL|-1.2840200|-0.2965911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345098|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_647|NULL|-1.2840200|-0.2965911	chrX	118610256	118610796	-	NA	NA	NA	NA	SLC25A5	NA	chrX:118602363-118605359	inter
CUST_5086_PI429285431	2.7784855	A	2.451737	A	1.2541835480145	0	lncRNA	5026-1_{1..485}	"transcript_id ""ENST00000449670.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449670.1"" | genecode_v17"	chr14	106938455	106938939	+	ENSG00000187156.4	ENST00000449670.1	LINC00221	LINC00221-003	NA	NA	NA	inter
CUST_21617_PI429285431	0.9018993	A	0.9063125	A	0.9969456768274	0	lncRNA	23230-1_{1..603}	lnc-SLC39A8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC39A8-2:1	chr4	102957839	102958441	-	lnc-SLC39A8-2	lnc-SLC39A8-2:1	ENSG00000251309.1	RP11-498M5.2	BANK1	NA	chr4:102947839-102968060	inner
CUST_18027_PI429285431	0.92994136	A	1.1485497	A	0.859394029874946	0	lncRNA	19761-1_{1..781}	lnc-FCGR3B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FCGR3B-4:1	chr1	161735620	161736400	-	lnc-FCGR3B-4	lnc-FCGR3B-4:1	XLOC_001070	linc-FCGR3B-3	ATF6	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-18.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80chr1:161736084-161746000"	NA	inter
CUST_17972_PI429285431	1.4730518	A	2.114666	A	0.640995351692693	0	lncRNA	19704-1_{1..1284}	lnc-MAP1LC3B2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP1LC3B2-1:3	chr12	116988920	116990203	+	lnc-MAP1LC3B2-1	lnc-MAP1LC3B2-1:3	XLOC_009898	linc-MAP1LC3B2-1	MAP1LC3B2	NA	chr12:116997186-116999617	inter
CUST_25027_PI429285431	1.7240148	A	1.5854431	A	1.10081474527453	0	lncRNA	26566-2_{3001..4821}	lnc-TYR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-TYR-1:1	chr11	 88260170	 88261990	+	lnc-TYR-1	lnc-TYR-1:1	ENSG00000255082.1	GRM5-AS1	GRM5	"hg19_refFlat_GRM5:range=chr11:88241760-887810405'pad=0,hg19_refFlat_GRM5:range=chr11:88241760-887810405'pad=0 3'pad=0 strand=- repeatMasking=none,-110.30chr11:88247170-88267222"	NA	inner
CUST_2701_PI429285431	0.9023302	A	0.89949834	A	1.00196482351576	0	lncRNA	2687-1_{1..466}	"transcript_id ""ENST00000434356.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434356.1"" | genecode_v17"	chr6	164767522	164767987	-	ENSG00000226739.1	ENST00000434356.1	RP11-347L18.1	RP11-347L18.1-001	NA	NA	NA	inter
CUST_27775_PI429285431	2.8283577	A	2.5129442	A	1.24436825849129	0	lncRNA	29360-1_{1..1518}	n324995|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079223|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079223|-0.7199990|-0.2231013	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324995|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079223|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079223|-0.7199990|-0.2231013	chr20	 37275833	 37277350	-	NA	NA	NA	NA	ARHGAP40	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-23.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40chr20:37265833-37279295"	NA	inner
CUST_16114_PI429285431	1.8994768	A	2.7289011	A	0.562753761524956	0	lncRNA	17820-1_{1..1326}	lnc-RAP1GDS1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAP1GDS1-3:4	chr4	 99599126	 99600451	+	lnc-RAP1GDS1-3	lnc-RAP1GDS1-3:4	XLOC_003615	linc-METAP1-2	NA	NA	NA	inter
LNCA_21_P0008210	0.9245269	A	0.90963435	A	1.01037619221489	0	lncRNA	TCONS_00022103	NA	NA	NA	NA	XLOC_010714	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010714), lincRNA [TCONS_00022103]"	chr13:107112554-107112495	hs|13q33.3	Agilent_HUMAN_G3V2	TCONS_00022103	TCONS_00022103	chr13	107112495	107112554	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11315_PI429285431	0.906039	A	0.8978487	A	1.00569322852868	0	lncRNA	12878-1_{1..2820}	lnc-DHX37-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-DHX37-3:3	chr12	126467750	126470569	-	lnc-DHX37-3	lnc-DHX37-3:3	XLOC_010238	linc-DHX37-20	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00"	NA	inter
CUST_25741_PI429285431	3.5056515	P	3.5732849	P	0.954201989870189	0	lncRNA	27267-1_{1..387}	lnc-UBASH3A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-UBASH3A-2:1	chr21	 43929431	 43929817	+	lnc-UBASH3A-2	lnc-UBASH3A-2:1	ENSG00000231867.1	AP001625.5	SLC37A1	NA	chr21:43919742-43939771	inner
LNCA_21_P0004909	0.9227663	A	0.9075478	A	1.01060449363448	0	lncRNA	TCONS_00011889	NA	NA	NA	NA	XLOC_005388	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005388), lincRNA [TCONS_00011889]"	chr6:93099369-93099428	hs|6q15	Agilent_HUMAN_G3V2	TCONS_00011889	TCONS_00011889	chr6	 93099369	 93099428	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23492_PI429285431	0.91540295	A	0.9064948	A	1.00619376156065	0	lncRNA	25059-1_{1..966}	lnc-ZNF461-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ZNF461-1:2	chr19	 37178170	 37179135	-	lnc-ZNF461-1	lnc-ZNF461-1:2	ENSG00000225975.1	AC074138.3	ZNF567	NA	chr19:37180302-37188312	inter
CUST_5007_PI429285431	3.58941	P	2.2856996	A	2.46862962263465	0	lncRNA	4948-2_{3001..4867}	"transcript_id ""ENST00000455531.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455531.1"" | genecode_v17"	chr14	101302615	101304481	+	ENSG00000214548.9	ENST00000455531.1	MEG3	MEG3-008	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50"	NA	inter
CUST_46896_PI429285431	0.90030205	A	0.89848995	A	1.00125684116959	0	lncRNA	51018-2_{3001..6000}	"gi|387157886|ref|NR_048561.1| Homo sapiens protein phosphatase, Mg2+/Mn2+ dependent, 1E (PPM1E), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387157886|ref|NR_048561.1| Homo sapiens protein phosphatase, Mg2+/Mn2+ dependent, 1E (PPM1E), transcript variant 2, non-coding RNA"	Chr17	 56836230	 56839229	+	22843	NR_048561.1	NA	NA	NA	NA	NA	inter
CUST_27795_PI429285431	2.1119523	A	0.8913074	A	2.33050870226456	0	lncRNA	29380-1_{1..805}	n325022|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078375|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078375|-0.8718640|-0.2503329	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325022|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078375|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078375|-0.8718640|-0.2503329	chr20	 24608182	 24608986	+	NA	NA	NA	NA	SYNDIG1	NA	chr20:24598182-24619627	inner
CUST_6495_PI429285431	2.5209308	A	3.03234	P	0.701536853812601	0	lncRNA	6437-1_{1..553}	"transcript_id ""ENST00000438770.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438770.2"" | genecode_v17"	chr19	 37742814	 37743366	+	ENSG00000226686.3	ENST00000438770.2	AC012309.5	AC012309.5-002	ZNF383	NA	chr19:37732814-37734574	inter
CUST_21177_PI429285431	5.000425	P	4.766152	P	1.17631382213209	0	lncRNA	22802-1_{1..441}	lnc-AGR3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGR3-1:3	chr7	 17337976	 17338416	-	lnc-AGR3-1	lnc-AGR3-1:3	ENSG00000237773.1	AC003075.4	AHR	NA	chr7:17338276-17348070	inter
CUST_43481_PI429285431	4.2916207	P	3.2553961	A	2.05085372959139	0	lncRNA	48277-3_{6001..6118}	"gi|313851015|ref|NR_037641.1| Homo sapiens HEATR8-TTC4 readthrough (HEATR8-TTC4), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|313851015|ref|NR_037641.1| Homo sapiens HEATR8-TTC4 readthrough (HEATR8-TTC4), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_037641.1	NA	NA	NA	NA	NA	Unknown
CUST_49198_PI429285431	0.8959015	A	0.8902042	A	1.00395687527311	0	lncRNA	53021-1_{1..595}	hg19_lincRNAsTranscripts_TCONS_l2_00020844 range=chr4:156902136-156931520 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020844 range=chr4:156902136-156931520 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	156902136	156902730	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46840_PI429285431	10.974413	P	11.437948	P	0.725207122775756	0	lncRNA	50977-1_{1..1713}	"gi|260166683|ref|NR_028582.1| Homo sapiens glucose 6 phosphatase, catalytic, 3 (G6PC3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|260166683|ref|NR_028582.1| Homo sapiens glucose 6 phosphatase, catalytic, 3 (G6PC3), transcript variant 2, non-coding RNA"	Chr17	 42148098	 42149810	+	92579	NR_028582.1	NA	NA	NA	NA	NA	inter
CUST_40604_PI429285431	0.9247871	A	1.1595486	A	0.849825476937538	0	lncRNA	41350-1_{1..2186}	n410085|NR_036523_2|lncRNA|Homosapiens||RefGeneNoncode|NR_036523_2||-1.0118100|-0.2934206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410085|NR_036523_2|lncRNA|Homosapiens||RefGeneNoncode|NR_036523_2||-1.0118100|-0.2934206	chr6	  2701358	  2703543	+	NA	NA	NA	NA	MYLK4	"hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40chr6:2691358-2726834"	NA	inner
LNCA_21_P0006397	8.695036	P	8.644185	P	1.03587577389378	0	lncRNA	AK124587	NA	AK124587	NA	Hs.654423	ABO	"ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)"	NA	THC2491790	GO:0030173|GO:0005794|GO:0016758|GO:0016020|GO:0005975|GO:0004381|GO:0032580|GO:0004380|GO:0006486|GO:0005576|GO:0016021|GO:0046872	"BROAD Institute lincRNA (XLOC_007880), lincRNA [TCONS_00016890]"	chr9:136126458-136126399	hs|9q34.2	Agilent_HUMAN_G3V2	AK124587	AK124587	chr9	136126399	136126458	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12279_PI429285431	6.8352685	P	7.0740743	P	0.847446501349482	0	lncRNA	13888-1_{1..2057}	lnc-GPR183-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR183-3:1	chr13	100152992	100155048	-	lnc-GPR183-3	lnc-GPR183-3:1	XLOC_010707	linc-GPR183-3	TM9SF2	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr13:100153728-100163447"	NA	inter
CUST_30717_PI429285431	8.539648	P	9.51561	P	0.508400727537795	0	lncRNA	32499-1_{1..251}	n336262|Y08770|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325480|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325480|0.2414760|-0.2311932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336262|Y08770|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325480|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325480|0.2414760|-0.2311932	chr4	 74702683	 74702933	+	NA	NA	NA	NA	CXCL6	NA	chr4:74702273-74704477	inner
CUST_29278_PI429285431	0.9951806	A	1.4017701	A	0.754404663785082	0	lncRNA	31029-1_{1..591}	n332387|AM991278|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500224|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500224|-0.7932750|-0.2165480	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332387|AM991278|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500224|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500224|-0.7932750|-0.2165480	chr18	 45567404	 45567994	-	NA	NA	NA	NA	ZBTB7C	NA	chr18:45557404-45663680	inner
CUST_43498_PI429285431	5.6299047	P	5.463336	P	1.12238582975401	0	lncRNA	48290-1_{1..1193}	"gi|254826733|ref|NR_027310.2| Homo sapiens uncharacterized MGC27382 (MGC27382), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|254826733|ref|NR_027310.2| Homo sapiens uncharacterized MGC27382 (MGC27382), non-coding RNA"	Chr1	 78695283	 78696475	+	149047	NR_027310.2	NA	NA	NA	NA	NA	inter
CUST_43973_PI429285431	4.340413	P	5.0653768	P	0.605012225342347	0	lncRNA	48675-1_{1..2747}	"gi|215272311|ref|NR_002826.2| Homo sapiens nucleolar complex associated 2 homolog (S. cerevisiae) pseudogene (LOC401010), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|215272311|ref|NR_002826.2| Homo sapiens nucleolar complex associated 2 homolog (S. cerevisiae) pseudogene (LOC401010), non-coding RNA"	Chr2	132199734	132202480	-	401010	NR_002826.2	NA	NA	NA	NA	NA	inter
CUST_22354_PI429285431	1.699419	A	1.934662	A	0.849541894697821	0	lncRNA	23948-1_{1..877}	lnc-PPARA-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPARA-3:2	chr22	 46452942	 46453818	+	lnc-PPARA-3	lnc-PPARA-3:2	ENSG00000241990.1	RP6-109B7.3	C22orf26	NA	chr22:46446339-46450024	inter
LNCA_21_P0008731	0.91753715	A	0.90274394	A	1.01030662289321	0	lncRNA	TCONS_00023648	NA	NA	NA	NA	XLOC_011448	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011448), lincRNA [TCONS_00023648]"	chr15:41578317-41578258	hs|15q15.1	Agilent_HUMAN_G3V2	TCONS_00023648	TCONS_00023648	chr15	 41578258	 41578317	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24718_PI429285431	1.3542374	A	0.9014698	A	1.3686633209107	0	lncRNA	26264-1_{1..810}	lnc-MUC20-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MUC20-2:2	chr3	195277107	195277916	+	lnc-MUC20-2	lnc-MUC20-2:2	ENSG00000223711.1	AC091633.3	APOD	NA	chr3:195281388-195287400	inter
CUST_24850_PI429285431	6.0431304	P	5.973697	P	1.04930450178468	0	lncRNA	26390-1_{1..1253}	lnc-C1orf86-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf86-1:3	chr1	  2115010	  2116262	-	lnc-C1orf86-1	lnc-C1orf86-1:3	ENSG00000182873.4	RP11-181G12.2	PRKCZ	NA	chr1:2105010-2116834	inner
CUST_27345_PI429285431	2.402736	A	2.3115191	A	1.06526834765813	0	lncRNA	28907-1_{1..692}	n324503|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040877|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040877|-0.8340510|-0.2077615	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324503|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040877|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040877|-0.8340510|-0.2077615	chr6	 50169382	 50170073	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47265_PI429285431	7.9258995	P	8.535192	P	0.655518090258179	0	lncRNA	51336-2_{3001..6000}	"gi|211971042|ref|NR_024377.1| Homo sapiens fer-1-like 4 (C. elegans) pseudogene (FER1L4), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|211971042|ref|NR_024377.1| Homo sapiens fer-1-like 4 (C. elegans) pseudogene (FER1L4), non-coding RNA"	NA	NA	NA	NA	NA	NR_024377.1	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.91"	NA	Unknown
CUST_24509_PI429285431	0.91606313	A	0.9125335	A	1.0024495483361	0	lncRNA	26060-1_{1..589}	lnc-LRTM2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-LRTM2-3:1	chr12	  2158300	  2158888	+	lnc-LRTM2-3	lnc-LRTM2-3:1	ENSG00000256257.1	CACNA1C-IT2	CACNA1C	NA	chr12:2162416-2168629	inter
CUST_19061_PI429285431	0.9110778	A	0.91570646	A	0.996796798602694	0	lncRNA	20752-1_{1..462}	lnc-RP11-58E21.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RP11-58E21.3.1-1:1	chr14	 50519393	 50519854	-	lnc-RP11-58E21.3.1-1	lnc-RP11-58E21.3.1-1:1	ENSG00000258391	RP11-58E21.5	NA	NA	NA	inter
CUST_29385_PI429285431	2.969585	P	2.610965	A	1.28219883232841	0	lncRNA	31137-1_{1..583}	n332686|AB083192|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061404|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061404|4.4440300|-0.2448033	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332686|AB083192|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061404|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061404|4.4440300|-0.2448033	chr3	 97680498	 97681080	-	NA	NA	NA	NA	MINA	NA	chr3:97670498-97691295	inner
CUST_34360_PI429285431	0.91681945	A	1.3737043	A	0.728557705115764	0	lncRNA	35848-1_{1..1620}	n341229|CR594841|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3697|NULL|-0.8805920|-0.2530096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341229|CR594841|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3697|NULL|-0.8805920|-0.2530096	chr7	 40172587	 40174206	+	NA	NA	NA	NA	C7orf10	"hg19_refFlat_MPLKIP:range=chr7:40172658-401741665'pad=0,hg19_refFlat_MPLKIP:range=chr7:40172658-401741665'pad=0 3'pad=0 strand=- repeatMasking=none,-109.90chr7:40174575-40184207"	NA	inner
CUST_11690_PI429285431	0.9301081	A	0.9387318	A	0.994040336329059	0	lncRNA	13268-1_{1..566}	lnc-LRRC1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC1-3:1	chr6	 53495811	 53496376	+	lnc-LRRC1-3	lnc-LRRC1-3:1	XLOC_005327	linc-LRRC1-1	NA	NA	NA	inter
LNCA_21_P0012774	0.918205	A	0.90426344	A	1.00971039590298	0	lncRNA	ENST00000515128	NA	NA	NA	NA	XLOC_l2_011098	NA	ENST00000515128	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011098), lincRNA [TCONS_l2_00021860]"	chr4:36550587-36550528	hs|4p14	Agilent_HUMAN_G3V2	ENST00000515128	ENST00000515128	chr4	 36550528	 36550587	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18160_PI429285431	7.512512	P	7.4008527	P	1.08047021320116	0	lncRNA	19895-1_{1..3000}	lnc-MFSD6L-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MFSD6L-1:3	chr17	  8770846	  8773845	-	lnc-MFSD6L-1	lnc-MFSD6L-1:3	ENSG00000174083	PIK3R6	PIK3R6	NA	chr17:8760846-8770994	inner
LNCA_21_P0014252	4.985912	P	4.8694334	P	1.08408554199726	0	lncRNA	XR_109021	XR_109021	XR_109021	NA	NA	LOC100505485	uncharacterized LOC100505485	NA	THC2637822	NA	"PREDICTED: Homo sapiens hypothetical LOC100505485 (LOC100505485), miscRNA [XR_109021]"	chr10:31596956-31596897	hs|10p11.22	Agilent_HUMAN_G3V2	XR_109021	XR_109021	chr10	 31596897	 31596956	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43928_PI429285431	3.0842664	A	1.036107	A	4.13577987239175	0	lncRNA	48639-1_{1..2942}	"gi|384871591|ref|NR_047585.1| Homo sapiens septin 10 (SEPT10), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384871591|ref|NR_047585.1| Homo sapiens septin 10 (SEPT10), transcript variant 3, non-coding RNA"	Chr2	110300374	110303315	-	151011	NR_047585.1	NA	NA	NA	NA	NA	inter
CUST_50489_PI429285431	0.89744425	A	1.0819882	A	0.879927185545266	0	lncRNA	54185-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030559 range=chrX:101032476-101035614 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030559 range=chrX:101032476-101035614 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	101032476	101035475	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1594_PI429285431	1.3770597	A	1.3994449	A	0.984603518367819	0	lncRNA	1580-1_{1..575}	"transcript_id ""ENST00000421006.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421006.1"" | genecode_v17"	chr3	186158193	186158767	+	ENSG00000234548.1	ENST00000421006.1	RP11-78H24.1	RP11-78H24.1-003	NA	NA	NA	inter
LNCA_21_P0005468	4.246581	P	4.007362	P	1.18035350649386	0	lncRNA	TCONS_00013686	NA	NA	NA	NA	XLOC_006348	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006348), lincRNA [TCONS_00013686]"	chr7:5655871-5655812	hs|7p22.1	Agilent_HUMAN_G3V2	TCONS_00013686	TCONS_00013686	chr7	  5655812	  5655871	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19140_PI429285431	0.9156107	A	0.91540295	A	1.00014401169545	0	lncRNA	20815-1_{1..1603}	lnc-OBFC2A-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-OBFC2A-8:1	NA	NA	     1602	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001068	0.922119	A	0.9090784	A	1.00908003074883	0	lncRNA	ENST00000446145	NA	NA	NA	NA	XLOC_000580	NA	ENST00000446145	NA	NA	"BROAD Institute lincRNA (XLOC_000580), lincRNA [TCONS_00000409]"	chr1:223354491-223354550	hs|1q41	Agilent_HUMAN_G3V2	ENST00000446145	ENST00000446145	chr1	223354491	223354550	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11851_PI429285431	5.0154386	P	5.2062225	P	0.876129539899131	0	lncRNA	13428-1_{1..518}	lnc-SLC44A3-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC44A3-1:7	chr1	 95428535	 95429052	+	lnc-SLC44A3-1	lnc-SLC44A3-1:7	XLOC_000304	linc-TMEM56-3	NA	NA	NA	inter
CUST_31784_PI429285431	0.9203245	A	0.91673416	A	1.00249173326837	0	lncRNA	33523-2_{3001..3270}	n338325|AL833129|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|719|NULL|-1.2066200|-0.3348852	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338325|AL833129|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|719|NULL|-1.2066200|-0.3348852	chr14	 60609870	 60610139	+	NA	NA	NA	NA	C14orf135	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.71;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00chr14:60596870-60601532"	NA	inter
CUST_27258_PI429285431	0.9215293	A	0.911878	A	1.00671219788582	0	lncRNA	28811-1_{1..660}	n324404|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042045|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042045|-1.2325600|-0.4138370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324404|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042045|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042045|-1.2325600|-0.4138370	chr6	123434014	123434673	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45325_PI429285431	1.1907105	A	0.9217684	A	1.20492395654406	0	lncRNA	49767-1_{1..1606}	"gi|341915454|ref|XR_108937.2| PREDICTED: Homo sapiens uncharacterized LOC730098 (LOC730098), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915454|ref|XR_108937.2| PREDICTED: Homo sapiens uncharacterized LOC730098 (LOC730098), misc_RNA"	NA	NA	NA	NA	NA	XR_108937.2	NA	NA	NA	NA	NA	Unknown
CUST_33624_PI429285431	0.90195465	A	1.184047	A	0.822397423606756	0	lncRNA	35189-1_{1..232}	n340384|AF056435|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2845|NULL|-1.0403400|-0.1445179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340384|AF056435|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2845|NULL|-1.0403400|-0.1445179	chr5	 10556693	 10556924	+	NA	NA	NA	NA	ANKRD33B	NA	chr5:10564435-10566927	inter
CUST_2111_PI429285431	0.9155549	A	0.9157863	A	0.99983961860489	0	lncRNA	2102-1_{1..487}	"transcript_id ""ENST00000507526.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507526.1"" | genecode_v17"	chr5	 24352418	 24352904	-	ENSG00000250694.1	ENST00000507526.1	CTD-2074D8.1	CTD-2074D8.1-001	NA	NA	NA	inter
CUST_30667_PI429285431	0.91472906	A	0.9066613	A	1.00560781032796	0	lncRNA	32449-1_{1..236}	n336126|X92015|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324493|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324493|-1.3130400|-0.2071492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336126|X92015|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324493|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324493|-1.3130400|-0.2071492	chr14	 22466271	 22466506	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004264	0.93028176	A	0.91815186	A	1.00844325085444	0	lncRNA	TCONS_00009995	NA	NA	NA	NA	XLOC_004421	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004421), lincRNA [TCONS_00009995]"	chr5:71867458-71867517	hs|5q13.2	Agilent_HUMAN_G3V2	TCONS_00009995	TCONS_00009995	chr5	 71867458	 71867517	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47397_PI429285431	1.516855	A	0.90086687	A	1.53260735038826	0	lncRNA	51442-2_{3001..3218}	"gi|373251167|ref|NR_046020.1| Homo sapiens transmembrane protease, serine 3 (TMPRSS3), transcript variant G, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|373251167|ref|NR_046020.1| Homo sapiens transmembrane protease, serine 3 (TMPRSS3), transcript variant G, non-coding RNA"	Chr21	 43794996	 43795213	-	64699	NR_046020.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00"	NA	inter
CUST_12832_PI429285431	0.926437	A	0.9266302	A	0.999866092931068	0	lncRNA	14459-1_{1..216}	lnc-AL590867.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL590867.1-2:1	chr6	153861937	153862152	+	lnc-AL590867.1-2	lnc-AL590867.1-2:1	XLOC_005508	linc-OPRM1-1	NA	NA	NA	inter
CUST_23945_PI429285431	2.065642	A	1.1533874	A	1.88198430941671	0	lncRNA	25502-1_{1..1007}	lnc-LYZL1-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LYZL1-3:7	chr10	 29771762	 29772768	+	lnc-LYZL1-3	lnc-LYZL1-3:7	ENSG00000224597.3	RP11-534G20.3	SVIL	"hg19_refFlat_SVIL:range=chr10:29747176-298439875'pad=0,hg19_refFlat_SVIL:range=chr10:29747176-298439875'pad=0 3'pad=0 strand=- repeatMasking=none,-105.90chr10:29761762-29782361"	NA	inner
CUST_29032_PI429285431	0.9271428	A	0.91090006	A	1.01132222609968	0	lncRNA	30761-1_{1..382}	n326522|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030082|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030082|-1.2985900|-0.5037298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326522|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030082|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030082|-1.2985900|-0.5037298	chr1	 95549071	 95549452	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43801_PI429285431	2.2055721	A	2.2758	A	0.952487523379118	0	lncRNA	48529-1_{1..3000}	"gi|109638758|ref|NR_003094.1| Homo sapiens E2F transcription factor 6 (E2F6), transcript variant d, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|109638758|ref|NR_003094.1| Homo sapiens E2F transcription factor 6 (E2F6), transcript variant d, non-coding RNA"	NA	NA	NA	NA	NA	NR_003094.1	NA	NA	NA	NA	NA	Unknown
CUST_25028_PI429285431	0.911685	A	0.9117733	A	0.999938796976938	0	lncRNA	26567-1_{1..600}	lnc-GDF5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GDF5-1:1	chr20	 34078682	 34079281	-	lnc-GDF5-1	lnc-GDF5-1:1	ENSG00000230155.1	RP3-477O4.14	CEP250	"hg19_refFlat_CEP250:range=chr20:34050193-340994555'pad=0,hg19_refFlat_CEP250:range=chr20:34050193-340994555'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90chr20:34068682-34088808"	NA	inner
CUST_105_PI429201921	5.7352977	P	5.900572	P	0.891758952928795	0	lncRNA	108-1_{1..3000}	TC15002682.hg.1	TCONS_l2_00009263-XLOC_l2_005024 // Broad TUCP // linc-SEC11A-2 chr15:-:85798750-85801879 // chr15 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr15:-:85798750-85801879	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00009263-XLOC_l2_005024	linc-SEC11A-2	chr15	 85798750	 85801879	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45102_PI429285431	4.6693153	P	4.453435	P	1.16141236587213	0	lncRNA	49585-1_{1..3000}	"gi|224549007|ref|NR_027237.1| Homo sapiens zinc finger protein pseudogene (LOC728743), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224549007|ref|NR_027237.1| Homo sapiens zinc finger protein pseudogene (LOC728743), non-coding RNA"	Chr7	150102840	150105839	+	728743	NR_027237.1	NA	NA	NA	NA	NA	inter
CUST_2585_PI429285431	0.9124837	A	0.91043675	A	1.00141984464756	0	lncRNA	2573-1_{1..357}	"transcript_id ""ENST00000417315.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417315.1"" | genecode_v17"	chr6	 98155635	 98155991	+	ENSG00000242486.1	ENST00000417315.1	RP1-104O17.2	RP1-104O17.2-001	NA	NA	NA	inter
LNCA_21_P0006419	0.9868934	A	0.9276742	A	1.04190172130255	0	lncRNA	ENST00000423919	NA	NA	NA	NA	XLOC_007953	NA	ENST00000423919	NA	NA	"BROAD Institute lincRNA (XLOC_007953), lincRNA [TCONS_00016976]"	chrX:38081040-38082721	hs|Xp11.4	Agilent_HUMAN_G3V2	ENST00000423919	ENST00000423919	chrX	 38081040	 38082721	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30662_PI429285431	6.0223637	P	5.8826556	P	1.10168219033994	0	lncRNA	32444-1_{1..236}	n336102|X87723|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324307|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324307|-1.3204500|-0.3369410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336102|X87723|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324307|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324307|-1.3204500|-0.3369410	chrX	115301975	115302210	+	NA	NA	NA	NA	AGTR2	NA	chrX:115301958-115306225	inner
CUST_808_PI429285431	2.46522	A	2.6188688	A	0.898973940160407	0	lncRNA	801-1_{1..569}	"transcript_id ""ENST00000419013.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419013.1"" | genecode_v17"	chr2	 22600466	 22601034	+	ENSG00000234207.1	ENST00000419013.1	AC096570.2	AC096570.2-001	NA	NA	NA	inter
CUST_2980_PI429285431	3.5442998	P	3.6811416	P	0.909507979234219	0	lncRNA	2959-1_{1..582}	"transcript_id ""ENST00000520570.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520570.1"" | genecode_v17"	chr8	  2558974	  2559555	-	ENSG00000254319.1	ENST00000520570.1	RP11-134O21.1	RP11-134O21.1-003	NA	NA	NA	inter
CUST_31716_PI429285431	13.646697	P	13.923877	P	0.82520244447496	0	lncRNA	33458-1_{1..2184}	n338245|AK097132|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|638|NULL|1.1961100|-0.1807538	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338245|AK097132|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|638|NULL|1.1961100|-0.1807538	chr1	153591283	153593466	-	NA	NA	NA	NA	CHTOP	"hg19_refFlat_S100A1:range=chr1:153602998-1536043175'pad=0,hg19_refFlat_S100A1:range=chr1:153602998-1536043175'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80chr1:153606458-153613836"	NA	inner
CUST_44968_PI429285431	0.93031144	A	0.92977875	A	1.00036930074635	0	lncRNA	49479-1_{1..2143}	"gi|341865586|ref|NR_040586.1| Homo sapiens stromal antigen 3-like 4 (STAG3L4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341865586|ref|NR_040586.1| Homo sapiens stromal antigen 3-like 4 (STAG3L4), transcript variant 2, non-coding RNA"	Chr7	 66767625	 66769767	+	64940	NR_040586.1	NA	NA	NA	NA	NA	inter
CUST_39965_PI429285431	0.93679374	A	1.1557711	A	0.859174237735692	0	lncRNA	40836-1_{1..2355}	n407021|NR_024517_5|lncRNA|Homosapiens||RefGeneNoncode|NR_024517_5||-0.9255260|-0.2602492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407021|NR_024517_5|lncRNA|Homosapiens||RefGeneNoncode|NR_024517_5||-0.9255260|-0.2602492	chr6	  4760077	  4762431	-	NA	NA	NA	NA	CDYL	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30chr6:4750077-4774535"	NA	inter
CUST_26457_PI429285431	0.9322859	A	0.9167987	A	1.01079273488379	0	lncRNA	27965-1_{1..743}	lnc-RP11-817J15.3.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-817J15.3.1-2:1	chr11	102478441	102479183	+	lnc-RP11-817J15.3.1-2	lnc-RP11-817J15.3.1-2:1	ENSG00000256916.1	RP11-817J15.2	MMP20	NA	chr11:102468441-102488853	inner
CUST_41398_PI429285431	4.6209674	P	4.112023	P	1.42300861887251	0	lncRNA	42511-1_{1..149}	ENST00000408348 ncrna:miRNA chromosome:GRCh37:4:9557789:9557937:-1 gene:ENSG00000221275 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408348 ncrna:miRNA chromosome:GRCh37:4:9557789:9557937:-1 gene:ENSG00000221275 gene_biotype:miRNA transcript_biotype:miRNA	chr4	  9557789	  9557937	-	ENSG00000221275	ENST00000408348	NA	NA	NA	NA	NA	inter
CUST_11178_PI429285431	2.9886582	A	3.4612958	P	0.720645875433797	0	lncRNA	12735-1_{1..506}	lnc-SSH1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SSH1-2:1	chr12	109162340	109162845	-	lnc-SSH1-2	lnc-SSH1-2:1	XLOC_010194	linc-CORO1C	NA	NA	NA	inter
CUST_5121_PI429285431	0.92304343	A	0.9177749	A	1.00365854290483	0	lncRNA	5061-1_{1..595}	"transcript_id ""ENST00000451816.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451816.2"" | genecode_v17"	chr15	 26902177	 26902771	-	ENSG00000235518.2	ENST00000451816.2	AC011196.3	AC011196.3-001	GABRB3	NA	chr15:26892177-26913910	inner
CUST_18161_PI429285431	1.4523892	A	0.8940189	A	1.47260479067148	0	lncRNA	19896-1_{1..562}	lnc-SYK-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SYK-5:3	chr9	 93944751	 93945312	+	lnc-SYK-5	lnc-SYK-5:3	ENSG00000229694	RP11-305L7.6	NA	NA	NA	inter
LNCA_19_P00319155	1.0092546	A	3.4115164	P	0.189167768500982	0	lncRNA	XR_109781	XR_109781	XR_109781	NA	Hs.695847	LOC100126447	uncharacterized LOC100126447	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100126447 (LOC100126447), miscRNA [XR_109781]"	chrX:115945180-115945121	hs|Xq23	Agilent_HUMAN_G3V2	XR_109781	XR_109781	chrX	115945121	115945180	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31677_PI429285431	0.9302554	A	0.91427904	A	1.01113551224971	0	lncRNA	33425-1_{1..2385}	n338202|AK126361|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|594|NULL|-1.0293200|-0.3563183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338202|AK126361|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|594|NULL|-1.0293200|-0.3563183	chr1	117963931	117966315	+	NA	NA	NA	NA	MAN1A2	NA	chr1:117953931-117976317	inner
CUST_8598_PI429285431	0.9265077	A	0.9224461	A	1.00281925322939	0	lncRNA	10154-1_{1..2606}	lnc-CTSL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CTSL2-2:1	chr9	 99892925	 99895530	-	lnc-CTSL2-2	lnc-CTSL2-2:1	ENSG00000249385	AL445670.1	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_FAM220A:range=chr7:6370006-63707855'pad=0,hg19_refFlat_FAM220A:range=chr7:6370006-63707855'pad=0 3'pad=0 strand=- repeatMasking=none,-97.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90"	NA	inter
CUST_7027_PI429285431	0.9445287	A	1.3934598	A	0.732585423168206	0	lncRNA	6974-1_{1..708}	"transcript_id ""ENST00000453902.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453902.1"" | genecode_v17"	chrX	 17988317	 17989024	-	ENSG00000225882.1	ENST00000453902.1	RP3-410B11.1	RP3-410B11.1-001	NA	NA	NA	inter
LNCA_21_P0009804	5.36236	P	5.8180156	P	0.72917873810043	0	lncRNA	TCONS_00027313	NA	NA	NA	NA	XLOC_013310	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013310), lincRNA [TCONS_00027313]"	chr19:35393954-35393895	hs|19q13.11	Agilent_HUMAN_G3V2	TCONS_00027313	TCONS_00027313	chr19	 35393895	 35393954	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7369_PI429285431	3.7032733	P	3.8248754	P	0.919166357603748	0	lncRNA	9014-1_{1..2235}	lnc-COX19-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COX19-2:1	chr7	  1099501	  1101735	-	lnc-COX19-2	lnc-COX19-2:1	ENSG00000244981	ENST00000501630	C7orf50	"hg19_refFlat_GPR146:range=chr7:1097152-10981535'pad=0,hg19_refFlat_GPR146:range=chr7:1097152-10981535'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.60chr7:1089501-1109548"	NA	inner
LNCA_21_P0005969	0.9163715	A	0.91833854	A	0.998637480843194	0	lncRNA	TCONS_00015478	NA	NA	NA	NA	XLOC_007155	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007155), lincRNA [TCONS_00015478]"	chr8:93470600-93470541	hs|8q22.1	Agilent_HUMAN_G3V2	TCONS_00015478	TCONS_00015478	chr8	 93470541	 93470600	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46699_PI429285431	4.659307	P	5.1714044	P	0.701202283779148	0	lncRNA	50858-2_{3001..3717}	"gi|364502996|ref|NR_045666.1| Homo sapiens acyl-CoA synthetase family member 3 (ACSF3), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|364502996|ref|NR_045666.1| Homo sapiens acyl-CoA synthetase family member 3 (ACSF3), transcript variant 5, non-coding RNA"	Chr16	 89163217	 89163933	+	197322	NR_045666.1	NA	NA	NA	NA	NA	inter
CUST_43478_PI429285431	8.756544	P	8.471442	P	1.21849640955964	0	lncRNA	48276-3_{6001..6472}	"gi|313851016|ref|NR_037639.1| Homo sapiens HEATR8-TTC4 readthrough (HEATR8-TTC4), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|313851016|ref|NR_037639.1| Homo sapiens HEATR8-TTC4 readthrough (HEATR8-TTC4), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NR_037639.1	NA	NA	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10"	NA	Unknown
CUST_39736_PI429285431	6.0932884	P	6.124339	P	0.978707323351437	0	lncRNA	40661-3_{6001..7238}	n405705|NR_002940_3|lncRNA|Homosapiens||RefGeneNoncode|NR_002940_3||8.1029800|-0.2473154	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405705|NR_002940_3|lncRNA|Homosapiens||RefGeneNoncode|NR_002940_3||8.1029800|-0.2473154	chr17	 43589248	 43590485	-	NA	NA	NA	NA	NA	"hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.01;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30"	NA	inter
CUST_1213_PI429285431	2.9424963	A	3.3402421	A	0.759043356636634	0	lncRNA	1204-1_{1..570}	"transcript_id ""ENST00000411436.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411436.1"" | genecode_v17"	chr2	204955180	204955749	+	ENSG00000234714.1	ENST00000411436.1	AC009965.2	AC009965.2-001	NA	NA	NA	inter
LNCA_21_P0002433	3.283453	P	3.7534528	P	0.7219646978468	0	lncRNA	TCONS_00004231	NA	NA	NA	NA	XLOC_002071	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002071), lincRNA [TCONS_00004231]"	chr2:43401158-43401099	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00004231	TCONS_00004231	chr2	 43401099	 43401158	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48674_PI429285431	1.3419987	A	1.423431	A	0.945118871784183	0	lncRNA	52517-1_{1..649}	hg19_lincRNAsTranscripts_TCONS_l2_00013838 range=chr2:98287111-98291356 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013838 range=chr2:98287111-98291356 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 98287111	 98287759	+	NA	NA	NA	NA	ACTR1B	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10chr2:98277111-98280561"	NA	inter
CUST_35164_PI429285431	4.5837803	P	4.725166	P	0.906647907051308	0	lncRNA	36566-1_{1..1360}	n342139|CR620215|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4624|NULL|-0.1634110|-0.2295557	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342139|CR620215|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4624|NULL|-0.1634110|-0.2295557	chr6	137303295	137304654	-	NA	NA	NA	NA	IL20RA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10chr6:137321108-137324368"	NA	inter
CUST_37722_PI429285431	3.9903903	P	4.2305474	P	0.846653112387922	0	lncRNA	38819-3_{6001..6548}	n346224|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1774|NULL|-1.5995900|-0.2887375	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346224|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1774|NULL|-1.5995900|-0.2887375	chr12	100556208	100556755	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42510_PI429285431	5.1130133	P	5.4502006	P	0.791583090764005	0	lncRNA	45290-1_{1..180}	ENST00000516320 ncrna:snoRNA chromosome:GRCh37:17:15477333:15477512:1 gene:ENSG00000252129 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516320 ncrna:snoRNA chromosome:GRCh37:17:15477333:15477512:1 gene:ENSG00000252129 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 15477333	 15477512	+	ENSG00000252129	ENST00000516320	NA	NA	NA	NA	NA	inter
CUST_18157_PI429285431	4.140855	P	4.4419827	P	0.811617737538935	0	lncRNA	19892-1_{1..592}	lnc-ARHGEF35-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARHGEF35-1:3	chr7	144052431	144053022	-	lnc-ARHGEF35-1	lnc-ARHGEF35-1:3	ENSG00000244479	RP4-798C17.6	ARHGEF5	NA	chr7:144052489-144062796	inner
CUST_35999_PI429285431	1.5419939	A	1.3005879	A	1.18214417648884	0	lncRNA	37335-1_{1..3000}	n344610|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_158|NULL|-1.5903400|-0.2935589	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344610|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_158|NULL|-1.5903400|-0.2935589	chr10	 43011215	 43014214	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1094_PI429285431	3.239131	A	2.988758	A	1.18951461699585	0	lncRNA	1083-1_{1..882}	"transcript_id ""ENST00000596540.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596540.1"" | genecode_v17"	chr2	145425552	145426433	+	ENSG00000226674.3	ENST00000596540.1	AC074093.1	AC074093.1-030	NA	NA	NA	inter
CUST_13413_PI429285431	0.91377217	A	0.90647435	A	1.00507127898301	0	lncRNA	15051-1_{1..425}	lnc-ZNF572-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF572-1:10	chr8	125963058	125963482	+	lnc-ZNF572-1	lnc-ZNF572-1:10	XLOC_006916	linc-ZNF572	NA	NA	NA	inter
CUST_45539_PI429285431	2.9229534	A	2.402134	A	1.43476991545043	0	lncRNA	49943-1_{1..3000}	"gi|409168318|ref|NR_073197.1| Homo sapiens acyl-CoA binding domain containing 5 (ACBD5), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|409168318|ref|NR_073197.1| Homo sapiens acyl-CoA binding domain containing 5 (ACBD5), transcript variant 7, non-coding RNA"	Chr10	 27484143	 27487142	-	91452	NR_073197.1	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50"	NA	inter
CUST_15315_PI429285431	3.563478	P	3.7648933	P	0.869696962203895	0	lncRNA	16994-1_{1..392}	lnc-CD9-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD9-3:1	chr12	  6281771	  6282162	+	lnc-CD9-3	lnc-CD9-3:1	XLOC_009629	linc-CD9-3	NA	NA	NA	inter
CUST_12772_PI429285431	0.9021268	A	1.1072382	A	0.867471701354063	0	lncRNA	14395-1_{1..850}	lnc-EIF3H-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF3H-1:1	chr8	117460251	117461100	-	lnc-EIF3H-1	lnc-EIF3H-1:1	XLOC_007186	linc-TRPS1-1	NA	NA	NA	inter
CUST_415_PI429285431	1.8837235	A	1.6014903	A	1.21607583613314	0	lncRNA	407-1_{1..670}	"transcript_id ""ENST00000457439.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457439.1"" | genecode_v17"	chr1	143687152	143687821	+	ENSG00000231734.3	ENST00000457439.1	RP6-206I17.2	RP6-206I17.2-005	NA	NA	NA	inter
CUST_1758_PI429285431	0.9107549	A	0.90931	A	1.00100203005819	0	lncRNA	1744-1_{1..582}	"transcript_id ""ENST00000508563.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508563.1"" | genecode_v17"	chr4	 43459544	 43460125	-	ENSG00000248143.1	ENST00000508563.1	RP11-324J13.2	RP11-324J13.2-001	NA	NA	NA	inter
CUST_44153_PI429285431	1.5408225	A	1.176539	A	1.28724217483798	0	lncRNA	48814-1_{1..771}	"gi|397139023|ref|XR_158995.1| PREDICTED: Homo sapiens uncharacterized LOC100506319, transcript variant 2 (LOC100506319), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139023|ref|XR_158995.1| PREDICTED: Homo sapiens uncharacterized LOC100506319, transcript variant 2 (LOC100506319), misc_RNA"	Chr3	 44469194	 44469964	+	100506319	XR_158995.2	NA	NA	NA	NA	NA	inter
CUST_33664_PI429285431	0.9183968	A	0.9198857	A	0.998968505519409	0	lncRNA	35226-1_{1..1754}	n340427|AK097591|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2888|NULL|-0.9173820|-0.2210756	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340427|AK097591|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2888|NULL|-0.9173820|-0.2210756	chr5	 35723088	 35724841	-	NA	NA	NA	NA	SPEF2	NA	chr5:35713088-35756487	inner
CUST_17666_PI429285431	1.2691011	A	0.9070819	A	1.28522344165645	0	lncRNA	19394-1_{1..499}	lnc-NR2F2-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR2F2-8:1	chr15	 95902733	 95903231	+	lnc-NR2F2-8	lnc-NR2F2-8:1	XLOC_011368	linc-NR2F2-3	NA	NA	NA	inter
CUST_40193_PI429285431	5.8841896	P	5.8998885	P	0.989177342694797	0	lncRNA	41026-1_{1..2820}	n407997|NR_027749|lncRNA|Homosapiens||RefGeneNoncode|NR_027749||6.5670600|-0.1976548	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407997|NR_027749|lncRNA|Homosapiens||RefGeneNoncode|NR_027749||6.5670600|-0.1976548	chr2	 74710199	 74713018	+	NA	NA	NA	NA	TTC31	NA	chr2:74710200-74721691	inner
CUST_14020_PI429285431	1.1190441	A	1.1149172	A	1.00286464437401	0	lncRNA	15668-1_{1..296}	lnc-TMED3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMED3-2:1	chr15	 79709644	 79709939	+	lnc-TMED3-2	lnc-TMED3-2:1	XLOC_011326	linc-KIAA1024	NA	NA	NA	inter
CUST_36196_PI429285431	6.505382	P	6.234199	P	1.20679698730361	0	lncRNA	37456-1_{1..1092}	n344745|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_294|NULL|-1.3263900|-0.2748847	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344745|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_294|NULL|-1.3263900|-0.2748847	chr16	 54952842	 54953933	-	NA	NA	NA	NA	IRX5	NA	chr16:54965111-54968397	inter
CUST_28204_PI429285431	0.9073602	A	1.0146867	A	0.928306741062334	0	lncRNA	29833-1_{1..547}	n325487|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322466|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322466|-1.2904300|-0.3931471	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325487|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322466|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322466|-1.2904300|-0.3931471	chr2	  2624767	  2625313	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004884	3.8992038	P	3.489843	P	1.3280972573803	0	lncRNA	TCONS_00011819	NA	NA	NA	NA	XLOC_005302	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005302), lincRNA [TCONS_00011819]"	chr6:45545783-45545842	hs|6p21.1	Agilent_HUMAN_G3V2	TCONS_00011819	TCONS_00011819	chr6	 45545783	 45545842	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20416_PI429285431	6.530606	P	6.32486	P	1.1532825409713	0	lncRNA	22058-1_{1..1238}	lnc-NBPF6-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NBPF6-1:4	chr1	108953126	108954363	+	lnc-NBPF6-1	lnc-NBPF6-1:4	ENSG00000243967.3	NBPF5	NA	NA	NA	inter
CUST_3071_PI429285431	0.9029869	A	0.90539	A	0.99833568452201	0	lncRNA	3050-1_{1..639}	"transcript_id ""ENST00000523411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523411.1"" | genecode_v17"	chr8	 36924959	 36925597	-	ENSG00000254038.1	ENST00000523411.1	RP11-419C23.1	RP11-419C23.1-001	NA	NA	NA	inter
CUST_34045_PI429285431	2.9500146	A	3.1822865	P	0.851293252183523	0	lncRNA	35577-1_{1..3000}	n340863|AK123944|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3328|NULL|0.3428940|-0.1299303	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340863|AK123944|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3328|NULL|0.3428940|-0.1299303	chr17	 73872452	 73875451	+	NA	NA	NA	NA	TRIM65	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-60.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TRIM47:range=chr17:73870564-738746295'pad=0,hg19_refFlat_TRIM47:range=chr17:73870564-738746295'pad=0 3'pad=0 strand=- repeatMasking=none,-115.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr17:73885041-73885621"	NA	inner
CUST_4959_PI429285431	0.91134727	A	0.9112759	A	1.00004947113793	0	lncRNA	4903-1_{1..465}	"transcript_id ""ENST00000554033.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554033.1"" | genecode_v17"	chr14	 95514557	 95515021	+	ENSG00000258866.1	ENST00000554033.1	RP11-991C1.2	RP11-991C1.2-001	NA	NA	NA	inter
CUST_47262_PI429285431	9.772099	P	9.8688965	P	0.935106442235128	0	lncRNA	51334-1_{1..803}	"gi|392494087|ref|NR_052024.1| Homo sapiens eukaryotic translation initiation factor 6 (EIF6), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392494087|ref|NR_052024.1| Homo sapiens eukaryotic translation initiation factor 6 (EIF6), transcript variant 9, non-coding RNA"	Chr20	 33866709	 33867511	-	3692	NR_052024.1	NA	NA	NA	NA	NA	inter
CUST_7897_PI429285431	3.3306625	P	2.27932	A	2.07245747615699	0	lncRNA	9512-3_{6001..8319}	lnc-GRHL2-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-GRHL2-9:1	chr8	102031826	102034144	+	lnc-GRHL2-9	lnc-GRHL2-9:1	ENSG00000248638	ENST00000512945	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10"	NA	inter
CUST_4886_PI429285431	0.89946944	A	0.90356123	A	0.997167805549532	0	lncRNA	4828-1_{1..654}	"transcript_id ""ENST00000555303.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555303.1"" | genecode_v17"	chr14	 73019288	 73019941	-	ENSG00000258871.1	ENST00000555303.1	RP3-514A23.2	RP3-514A23.2-001	RGS6	NA	chr14:73009288-73033238	inner
CUST_41337_PI429285431	0.9015253	A	0.899622	A	1.00132013764432	0	lncRNA	42398-1_{1..85}	ENST00000578474 ncrna:miRNA chromosome:GRCh37:2:101925912:101925996:1 gene:ENSG00000264857 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578474 ncrna:miRNA chromosome:GRCh37:2:101925912:101925996:1 gene:ENSG00000264857 gene_biotype:miRNA transcript_biotype:miRNA	chr2	101925912	101925996	+	ENSG00000264857	ENST00000578474	NA	NA	RNF149	NA	chr2:101915912-101925178	inter
CUST_19616_PI429285431	0.9183291	A	0.9187767	A	0.999689795445367	0	lncRNA	21272-1_{1..437}	lnc-ROPN1B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-ROPN1B-3:1	chr3	125826727	125827163	+	lnc-ROPN1B-3	lnc-ROPN1B-3:1	ENSG00000250218.1	ALDH1L1-AS1	ALDH1L1	NA	chr3:125822408-125836912	inner
LNCA_21_P0005344	0.9202646	A	0.9050137	A	1.01062719001337	0	lncRNA	TCONS_00014043	NA	NA	NA	NA	XLOC_005955	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005955), lincRNA [TCONS_00014043]"	chr7:391070-391129	hs|7p22.3	Agilent_HUMAN_G3V2	TCONS_00014043	TCONS_00014043	chr7	   391070	   391129	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001663	0.9192752	A	0.9040445	A	1.01061303974201	0	lncRNA	TCONS_00001932	NA	NA	NA	NA	XLOC_000036	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000036), lincRNA [TCONS_00001932]"	chr1:5080839-5080898	hs|1p36.32	Agilent_HUMAN_G3V2	TCONS_00001932	TCONS_00001932	chr1	  5080839	  5080898	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34434_PI429285431	0.90836847	A	0.9067219	A	1.00114196690131	0	lncRNA	35914-1_{1..1556}	n341311|BC042072|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3780|NULL|-0.6935000|-0.3161614	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341311|BC042072|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3780|NULL|-0.6935000|-0.3161614	chr7	124824623	124826178	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12895_PI429285431	2.2865753	A	2.8433332	A	0.679828193984864	0	lncRNA	14523-1_{1..404}	lnc-GPR26-4:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR26-4:11	chr10	125264157	125264560	+	lnc-GPR26-4	lnc-GPR26-4:11	XLOC_008652	linc-GPR26-3	NA	NA	NA	inter
CUST_8435_PI429285431	5.4334726	P	6.4448276	P	0.496080103256737	0	lncRNA	10005-1_{1..578}	lnc-WDR74-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR74-1:12	chr11	 62622896	 62623473	-	lnc-WDR74-1	lnc-WDR74-1:12	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62632960	inter
CUST_5652_PI429285431	4.480798	P	4.2703724	P	1.15702946123512	0	lncRNA	5578-3_{6001..7616}	"transcript_id ""ENST00000568107.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000568107.1"" | genecode_v17"	chr16	 81422874	 81424489	+	ENSG00000261609.1	ENST00000568107.1	MIR4720	MIR4720-001	GAN	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr16:81406874-81413803"	NA	inter
CUST_21366_PI429285431	0.891248	A	0.888002	A	1.00225248879793	0	lncRNA	22989-1_{1..2305}	lnc-CSRNP3-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CSRNP3-4:2	chr2	167157441	167159745	+	lnc-CSRNP3-4	lnc-CSRNP3-4:2	ENSG00000236107.2	AC010127.3	SCN9A	"hg19_refFlat_SCN1A:range=chr2:166847755-1669301315'pad=0,hg19_refFlat_SCN1A:range=chr2:166847755-1669301315'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_SCN9A:range=chr2:167055182-1671682665'pad=0,hg19_refFlat_SCN9A:range=chr2:167055182-1671682665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_SCN3A:range=chr2:165946660-1660329045'pad=0,hg19_refFlat_SCN3A:range=chr2:165946660-1660329045'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SCN2A:range=chr2:166152334-1662463345'pad=0,hg19_refFlat_SCN2A:range=chr2:166152334-1662463345'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40chr2:167147441-167168294"	NA	inner
CUST_8219_PI429285431	0.89634573	A	0.8909649	A	1.00373667115648	0	lncRNA	9809-3_{6001..6120}	lnc-TMEM132D-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM132D-3:6	chr12	130652507	130652626	-	lnc-TMEM132D-3	lnc-TMEM132D-3:6	ENSG00000250208	ENST00000505807	FZD10	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10chr12:130647004-130650285"	NA	inter
CUST_28805_PI429285431	2.0559168	A	2.6566722	A	0.659408596408764	0	lncRNA	30513-1_{1..767}	n326214|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092501|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092501|-0.7851670|-0.2350730	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326214|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092501|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092501|-0.7851670|-0.2350730	chr1	221055024	221055790	+	NA	NA	NA	NA	HLX	NA	chr1:221052743-221058401	inner
CUST_8253_PI429285431	0.9067528	A	0.9071044	A	0.999756319146318	0	lncRNA	9843-1_{1..3000}	lnc-KLHL36-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL36-2:1	chr16	 84608898	 84611897	+	lnc-KLHL36-2	lnc-KLHL36-2:1	ENSG00000245982	ENST00000499573	COTL1	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_COTL1:range=chr16:84600451-846515205'pad=0,hg19_refFlat_COTL1:range=chr16:84600451-846515205'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-64.40chr16:84599202-84620702"	NA	inner
CUST_24418_PI429285431	9.102995	P	8.640745	P	1.37768876096959	0	lncRNA	25971-1_{1..563}	lnc-RPS21-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS21-1:1	chr20	 60931248	 60931810	+	lnc-RPS21-1	lnc-RPS21-1:1	ENSG00000228812.2	RP11-157P1.5	LAMA5	"hg19_refFlat_LAMA5:range=chr20:60884392-609423015'pad=0,hg19_refFlat_LAMA5:range=chr20:60884392-609423015'pad=0 3'pad=0 strand=- repeatMasking=none,-98.90chr20:60921248-60941271"	NA	inner
CUST_16583_PI429285431	2.9762044	A	2.7882123	A	1.1391771392274	0	lncRNA	18284-1_{1..970}	lnc-LY6H-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LY6H-1:1	chr8	144164488	144165457	-	lnc-LY6H-1	lnc-LY6H-1:1	XLOC_007248	linc-CYP11B2	NA	NA	NA	inter
CUST_21853_PI429285431	0.91980004	A	0.9136373	A	1.00428082251056	0	lncRNA	23463-1_{1..543}	lnc-C19orf12-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C19orf12-3:1	chr19	 30017527	 30018069	-	lnc-C19orf12-3	lnc-C19orf12-3:1	ENSG00000266248.1	CTC-525D6.2	VSTM2B	"hg19_refFlat_VSTM2B:range=chr19:30017491-300548415'pad=0,hg19_refFlat_VSTM2B:range=chr19:30017491-300548415'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.40chr19:30017491-30027855"	NA	inner
LNCA_21_P0006298	0.917874	A	0.9038505	A	1.00976774552787	0	lncRNA	TCONS_00016430	NA	NA	NA	NA	XLOC_007796	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007796), lincRNA [TCONS_00016430]"	chr9:100164902-100164843	hs|9q22.33	Agilent_HUMAN_G3V2	TCONS_00016430	TCONS_00016430	chr9	100164843	100164902	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47172_PI429285431	0.9230584	A	0.9110029	A	1.00839124662544	0	lncRNA	51249-1_{1..1146}	"gi|91176316|ref|NR_002948.1| Homo sapiens kallikrein pseudogene 1 (KLKP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|91176316|ref|NR_002948.1| Homo sapiens kallikrein pseudogene 1 (KLKP1), non-coding RNA"	Chr19	 51385352	 51386497	-	606293	NR_002948.1	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60"	NA	inter
CUST_46459_PI429285431	0.90486026	A	0.897857	A	1.00486609107674	0	lncRNA	50661-1_{1..3000}	"gi|345842468|ref|NR_027513.2| Homo sapiens cyclin D-type binding-protein 1 (CCNDBP1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|345842468|ref|NR_027513.2| Homo sapiens cyclin D-type binding-protein 1 (CCNDBP1), transcript variant 3, non-coding RNA"	Chr15	 43477466	 43480465	+	23582	NR_027513.2	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90"	NA	inter
CUST_39768_PI429285431	5.338476	P	3.9482265	P	2.62124008636181	0	lncRNA	40686-1_{1..3000}	n405970|NR_003252|lncRNA|Homosapiens||RefGeneNoncode|NR_003252||9.4504000|-0.2941363	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405970|NR_003252|lncRNA|Homosapiens||RefGeneNoncode|NR_003252||9.4504000|-0.2941363	chr10	121578785	121581784	+	NA	NA	NA	NA	INPP5F	"hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90chr10:121568785-121588659"	NA	inner
CUST_9347_PI429285431	0.9197295	A	1.0820916	A	0.893560860625242	0	lncRNA	10853-1_{1..3000}	lnc-HMBOX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HMBOX1-1:1	chr8	 28921912	 28924911	+	lnc-HMBOX1-1	lnc-HMBOX1-1:1	XLOC_006753	linc-LEPROTL1-6	KIF13B	NA	chr8:28924795-28932437	inter
CUST_50214_PI429285431	2.8236187	A	3.1712842	P	0.785854702035036	0	lncRNA	53940-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00029312 range=chr9:66523686-66559785 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029312 range=chr9:66523686-66559785 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 66523686	 66526685	-	NA	NA	NA	NA	LOC100132004	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr9:66544359-66569785"	NA	inter
CUST_46518_PI429285431	10.62176	P	10.7425165	P	0.919705262137646	0	lncRNA	50709-1_{1..659}	"gi|315113862|ref|NR_037652.1| Homo sapiens suppressor of tumorigenicity 20 (ST20), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315113862|ref|NR_037652.1| Homo sapiens suppressor of tumorigenicity 20 (ST20), transcript variant 4, non-coding RNA"	Chr15	 80191182	 80191840	-	400410	NR_037652.1	NA	NA	NA	NA	NA	inter
CUST_33553_PI429285431	0.91427577	A	0.91604143	A	0.998776886363146	0	lncRNA	35121-1_{1..2872}	n340302|AK096910|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2763|NULL|3.9542200|-0.1532833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340302|AK096910|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2763|NULL|3.9542200|-0.1532833	chr5	   414938	   417809	-	NA	NA	NA	NA	AHRR	NA	chr5:404938-427808	inner
CUST_28998_PI429285431	6.4617553	P	6.891573	P	0.742355583982432	0	lncRNA	30722-1_{1..547}	n326482|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033693|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033693|-1.2858200|-0.3743957	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326482|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033693|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033693|-1.2858200|-0.3743957	chr1	112521378	112521924	-	NA	NA	NA	NA	KCND3	NA	chr1:112511378-112531777	inner
CUST_47832_PI429285431	9.298328	P	8.094916	P	2.30283652507527	0	lncRNA	51739-7_{18001..18678}	"gi|410170958|ref|XR_171122.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410170958|ref|XR_171122.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	XR_171122.1	NA	NA	NA	NA	NA	Unknown
CUST_12343_PI429285431	0.9144424	A	0.9113333	A	1.00215738771831	0	lncRNA	13955-1_{1..551}	lnc-NAALADL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAALADL2-1:1	chr3	176276509	176277059	+	lnc-NAALADL2-1	lnc-NAALADL2-1:1	XLOC_002926	linc-KCNMB2-10	NA	NA	NA	inter
CUST_44275_PI429285431	0.9203943	A	0.9186528	A	1.00120784467248	0	lncRNA	48912-3_{6001..6669}	"gi|224451008|ref|NR_027038.1| Homo sapiens uncharacterized LOC401093 (LOC401093), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224451008|ref|NR_027038.1| Homo sapiens uncharacterized LOC401093 (LOC401093), transcript variant 1, non-coding RNA"	Chr3	151986405	151987073	-	401093	NR_027038.1	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90"	NA	inter
LNCA_21_P0006602	0.9221909	A	0.9091992	A	1.00904582866463	0	lncRNA	TCONS_00017638	NA	NA	NA	NA	XLOC_008297	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008297), lincRNA [TCONS_00017638]"	chrY:17572236-17572618	hs|Yq11.221	Agilent_HUMAN_G3V2	TCONS_00017638	TCONS_00017638	chrY	 17572236	 17572618	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_470_PI429285431	1.6523099	A	1.9484897	A	0.814406059058425	0	lncRNA	461-1_{1..423}	"transcript_id ""ENST00000425271.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425271.1"" | genecode_v17"	chr1	166304121	166304543	+	ENSG00000229588.1	ENST00000425271.1	RP11-479J7.2	RP11-479J7.2-001	NA	NA	NA	inter
CUST_41111_PI429285431	4.901398	P	4.720258	P	1.13377943008241	0	lncRNA	41862-1_{1..65}	ENST00000584344 ncrna:miRNA chromosome:GRCh37:7:99754228:99754292:-1 gene:ENSG00000266154 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584344 ncrna:miRNA chromosome:GRCh37:7:99754228:99754292:-1 gene:ENSG00000266154 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 99754228	 99754292	-	ENSG00000266154	ENST00000584344	NA	NA	GAL3ST4	NA	chr7:99756865-99764292	inter
CUST_22622_PI429285431	1.0079969	A	1.2818274	A	0.82712053984269	0	lncRNA	24208-1_{1..1327}	lnc-SLC9A4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC9A4-1:1	chr2	103056053	103057379	+	lnc-SLC9A4-1	lnc-SLC9A4-1:1	ENSG00000234389.1	AC007278.3	IL18RAP	NA	chr2:103046053-103066935	inner
CUST_39280_PI429285431	5.3485684	P	5.752656	P	0.755714076038265	0	lncRNA	40252-1_{1..1260}	n386255|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fjx.1||0.1900180|-0.2236365	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386255|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fjx.1||0.1900180|-0.2236365	chr2	110969791	110971050	-	NA	NA	NA	NA	NPHP1	NA	chr2:110959791-110962639	inter
CUST_45000_PI429285431	0.92179334	A	0.9210504	A	1.00051509938447	0	lncRNA	49507-1_{1..3000}	"gi|262205173|ref|NR_030672.1| Homo sapiens KIAA1324-like (KIAA1324L), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|262205173|ref|NR_030672.1| Homo sapiens KIAA1324-like (KIAA1324L), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_030672.1	NA	NA	NA	NA	NA	Unknown
CUST_27011_PI429285431	0.92064804	A	0.907527	A	1.00913629534967	0	lncRNA	28541-1_{1..311}	n324116|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052437|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052437|-1.3972200|-0.5089480	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324116|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052437|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052437|-1.3972200|-0.5089480	chr9	 37069931	 37070241	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15010_PI429285431	2.2994883	A	1.3744819	A	1.89869266475255	0	lncRNA	16672-1_{1..676}	lnc-IKZF2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IKZF2-3:1	chr2	214148757	214149432	-	lnc-IKZF2-3	lnc-IKZF2-3:1	XLOC_002478	linc-IKZF2-1	SPAG16	NA	chr2:214149116-214158967	inner
CUST_49392_PI429285431	0.9212871	A	0.91025555	A	1.00767579682351	0	lncRNA	53205-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00022568 range=chr5:147618054-147646815 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022568 range=chr5:147618054-147646815 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	147618054	147621053	+	NA	NA	NA	NA	SPINK13	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr5:147648423-147656815"	NA	inter
CUST_17996_PI429285431	9.892054	P	10.3985	P	0.703954456769243	0	lncRNA	19730-1_{1..478}	lnc-ATP8A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP8A1-1:2	chr4	 42393192	 42393669	-	lnc-ATP8A1-1	lnc-ATP8A1-1:2	XLOC_003939	linc-BEND4	SHISA3	NA	chr4:42399856-42403276	inter
CUST_25286_PI429285431	1.0476648	A	0.9247516	A	1.08893149761077	0	lncRNA	26817-1_{1..660}	lnc-OR5P3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR5P3-1:2	chr11	  7904407	  7905066	-	lnc-OR5P3-1	lnc-OR5P3-1:2	ENSG00000254951.2	RP11-494M8.4	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00"	NA	inter
CUST_4637_PI429285431	6.0155535	P	6.0433025	P	0.980949654707565	0	lncRNA	4583-1_{1..433}	"transcript_id ""ENST00000448411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448411.1"" | genecode_v17"	chr13	 63246418	 63246850	-	ENSG00000228669.1	ENST00000448411.1	LINC00448	LINC00448-001	NA	NA	NA	inter
CUST_34921_PI429285431	2.6415951	P	3.0986493	P	0.728472188771265	0	lncRNA	36343-1_{1..3000}	n341839|S57551|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4318|NULL|11.9602000|-0.1445185	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341839|S57551|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4318|NULL|11.9602000|-0.1445185	chr12	 14765565	 14768564	-	NA	NA	NA	NA	GUCY2C	NA	chr12:14765566-14849519	inner
CUST_50564_PI429285431	1.0741539	A	1.0782164	A	0.997188050535952	0	lncRNA	54256-1_{1..576}	hg19_lincRNAsTranscripts_TCONS_l2_00030901 range=chrY:15971224-15983548 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030901 range=chrY:15971224-15983548 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrY	 15971224	 15971799	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_25295_PI429285431	0.908276	A	0.90313977	A	1.00356650825213	0	lncRNA	26826-1_{1..411}	lnc-CCDC81-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC81-1:1	chr11	 86333767	 86334177	+	lnc-CCDC81-1	lnc-CCDC81-1:1	ENSG00000254733.1	RP11-317J19.1	ME3	NA	chr11:86323767-86343909	inner
CUST_17382_PI429285431	0.9239048	A	0.9109699	A	1.00900610254566	0	lncRNA	19104-1_{1..1093}	lnc-MPZ-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MPZ-1:1	chr1	161262233	161263325	-	lnc-MPZ-1	lnc-MPZ-1:1	XLOC_001065	linc-NR1I3	PCP4L1	NA	chr1:161252233-161255240	inter
CUST_9131_PI429285431	0.90776676	A	1.3591377	A	0.731347545009426	0	lncRNA	10650-1_{1..2282}	lnc-C6orf223-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C6orf223-2:1	chr6	 43904101	 43906382	+	lnc-C6orf223-2	lnc-C6orf223-2:1	ENSG00000250581	ENST00000504566	NA	NA	NA	inter
CUST_22158_PI429285431	0.90850013	A	0.90726066	A	1.00085950429819	0	lncRNA	23760-1_{1..301}	lnc-NUP160-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUP160-1:1	chr11	 48037379	 48037679	-	lnc-NUP160-1	lnc-NUP160-1:1	ENSG00000254879.1	AC103828.1	PTPRJ	NA	chr11:48027379-48047407	inner
CUST_17304_PI429285431	1.5381367	A	1.7803041	A	0.845474178917268	0	lncRNA	19022-1_{1..442}	lnc-CLMP-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CLMP-2:2	chr11	123185200	123185641	-	lnc-CLMP-2	lnc-CLMP-2:2	XLOC_009585	linc-ASAM-2	NA	NA	NA	inter
CUST_50251_PI429285431	2.558455	A	2.7339637	A	0.885455249015035	0	lncRNA	53974-1_{1..1317}	hg19_lincRNAsTranscripts_TCONS_l2_00029351 range=chr9:68425681-68440107 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029351 range=chr9:68425681-68440107 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 68425681	 68426997	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50849_PI429285431	0.91875863	A	0.91785866	A	1.00062400627905	0	lncRNA	54494-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00005134 range=chr11:78133641-78139043 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005134 range=chr11:78133641-78139043 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	 78133641	 78136640	-	NA	NA	NA	NA	NARS2	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60chr11:78147016-78149043"	NA	inter
CUST_27566_PI429285431	3.0313375	A	2.2288458	A	1.74411080645139	0	lncRNA	29144-1_{1..1915}	n324756|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316076|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316076|0.1310970|-0.3773054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324756|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316076|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316076|0.1310970|-0.3773054	chr22	 16117748	 16119662	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26187_PI429285431	1.2879698	A	1.143011	A	1.10569907668685	0	lncRNA	27698-1_{1..730}	lnc-MRP63-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRP63-6:1	chr13	 21950684	 21951413	+	lnc-MRP63-6	lnc-MRP63-6:1	ENSG00000227146.1	ZDHHC20-AS1	ZDHHC20	NA	chr13:21940684-21960797	inner
CUST_7542_PI429285431	0.91752106	A	0.91023237	A	1.00506491847613	0	lncRNA	9179-1_{1..1246}	lnc-CCDC73-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC73-1:1	chr11	 32878982	 32880227	-	lnc-CCDC73-1	lnc-CCDC73-1:1	ENSG00000248689	ENST00000503260	PRRG4	NA	chr11:32868982-32879669	inner
CUST_42569_PI429285431	6.13925	P	6.1803207	P	0.971933356728645	0	lncRNA	45402-1_{1..123}	ENST00000363548 ncrna:snoRNA chromosome:GRCh37:3:186504112:186504234:1 gene:ENSG00000200418 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363548 ncrna:snoRNA chromosome:GRCh37:3:186504112:186504234:1 gene:ENSG00000200418 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	186504112	186504234	+	ENSG00000200418	ENST00000363548	NA	NA	RFC4	NA	chr3:186507681-186514234	inner
CUST_16623_PI429285431	2.803341	A	2.3043194	A	1.41325480294571	0	lncRNA	18323-1_{1..731}	lnc-ATP1B3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP1B3-1:1	chr3	141579726	141580456	+	lnc-ATP1B3-1	lnc-ATP1B3-1:1	XLOC_002841	linc-ATP1B3	ATP1B3	NA	chr3:141582711-141590150	inter
CUST_29358_PI429285431	5.2643576	P	4.499607	P	1.69907625203548	0	lncRNA	31110-1_{1..211}	n332616|AL137373|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000025661|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000025661|-1.2020200|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332616|AL137373|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000025661|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000025661|-1.2020200|-1.0000000	chr10	105148625	105148835	+	NA	NA	NA	NA	USMG5	NA	chr10:105148807-105156270	inner
CUST_51994_PI429285431	0.9517484	A	0.9270005	A	1.01730191078846	0	lncRNA	55530-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017239 range=chr21:40360514-40384579 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017239 range=chr21:40360514-40384579 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 40360514	 40363513	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27109_PI429285431	0.92998683	A	0.91761255	A	1.00861408684439	0	lncRNA	28642-1_{1..2592}	n324221|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319722|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319722|-0.7664820|-0.3076370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324221|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319722|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319722|-0.7664820|-0.3076370	chr7	 22656103	 22658694	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40589_PI429285431	4.4111695	P	4.516778	P	0.929412852123051	0	lncRNA	41338-1_{1..3000}	n410053|NR_036491|lncRNA|Homosapiens||RefGeneNoncode|NR_036491||8.9975200|-0.2501217	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410053|NR_036491|lncRNA|Homosapiens||RefGeneNoncode|NR_036491||8.9975200|-0.2501217	chr8	101145587	101148586	-	NA	NA	NA	NA	FBXO43	NA	chr8:101145588-101158099	inner
CUST_38127_PI429285431	1.6440786	A	0.9702412	A	1.59531066882941	0	lncRNA	39200-1_{1..559}	n381244|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001eqj.1||-1.2224100|-0.2592875	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381244|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001eqj.1||-1.2224100|-0.2592875	chr1	147751388	147751946	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3989_PI429285431	0.9239799	A	0.9071191	A	1.01175557598021	0	lncRNA	3950-1_{1..446}	"transcript_id ""ENST00000602912.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602912.1"" | genecode_v17"	chr11	 67227339	 67227784	+	ENSG00000269913.1	ENST00000602912.1	CTC-1337H24.1	CTC-1337H24.1-001	CABP4	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40chr11:67222818-67229245"	NA	inner
CUST_11325_PI429285431	0.9132925	A	0.9040823	A	1.00640444547824	0	lncRNA	12888-1_{1..454}	lnc-FAM175B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM175B-1:1	chr10	126574836	126575289	+	lnc-FAM175B-1	lnc-FAM175B-1:1	XLOC_008658	linc-ZRANB1	NA	NA	NA	inter
CUST_30951_PI429285431	11.121049	P	11.083174	P	1.02660059370312	0	lncRNA	32739-1_{1..259}	n337067|DQ185040|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342122|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342122|1.5017300|-0.2142094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337067|DQ185040|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342122|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342122|1.5017300|-0.2142094	chr11	 62339127	 62339385	-	NA	NA	NA	NA	EEF1G	NA	chr11:62329127-62341460	inner
LNCA_21_P0011318	2.2237391	A	1.426376	A	1.73792171842694	0	lncRNA	TCONS_l2_00008604	NA	NA	NA	NA	XLOC_l2_004640	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004640), lincRNA [TCONS_l2_00008604]"	chr15:42931058-42931117	hs|15q15.2	Agilent_HUMAN_G3V2	TCONS_l2_00008604	TCONS_l2_00008604	chr15	 42931058	 42931117	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13072_PI429285431	4.50709	P	4.8993006	P	0.761961178399417	0	lncRNA	14699-1_{1..1176}	lnc-CD93-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD93-3:1	chr20	 23169415	 23170590	-	lnc-CD93-3	lnc-CD93-3:1	XLOC_013690	linc-CD93-3	NA	NA	NA	inter
CUST_21914_PI429285431	4.9188867	P	4.8821917	P	1.02576126633621	0	lncRNA	23523-1_{1..558}	lnc-FN1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FN1-3:1	chr2	216708347	216708904	-	lnc-FN1-3	lnc-FN1-3:1	ENSG00000235770.1	LINC00607	NA	NA	NA	inter
CUST_49104_PI429285431	3.2322245	P	3.7171295	P	0.714544120324444	0	lncRNA	52928-1_{1..297}	hg19_lincRNAsTranscripts_TCONS_l2_00021109 range=chr4:38604077-38607986 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021109 range=chr4:38604077-38607986 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 38604077	 38604373	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19755_PI429285431	1.4288363	A	1.4514285	A	0.984462256145703	0	lncRNA	21413-1_{1..587}	lnc-SQLE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SQLE-1:1	chr8	126056741	126057327	+	lnc-SQLE-1	lnc-SQLE-1:1	ENSG00000253167.1	KIAA0196-AS1	KIAA0196	"hg19_refFlat_KIAA0196:range=chr8:126036859-1260961405'pad=0,hg19_refFlat_KIAA0196:range=chr8:126036859-1260961405'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90chr8:126046741-126067231"	NA	inner
CUST_51816_PI429285431	1.3066031	A	0.9228431	A	1.30473787954242	0	lncRNA	55369-3_{6001..6158}	hg19_lincRNAsTranscripts_TCONS_l2_00012434 range=chr19:28284385-28302073 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012434 range=chr19:28284385-28302073 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 28290385	 28290542	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00"	NA	inter
CUST_16601_PI429285431	0.9026051	A	1.5374701	A	0.644001074251882	0	lncRNA	18302-1_{1..507}	lnc-PRL-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,UCSC,"	>lnc-PRL-6:1	chr6	 21502673	 21503179	-	lnc-PRL-6	lnc-PRL-6:1	XLOC_005637	linc-MBOAT1-4	NA	NA	NA	inter
CUST_25774_PI429285431	0.90200275	A	0.9045447	A	0.998239605839061	0	lncRNA	27299-1_{1..625}	lnc-ADAM22-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAM22-3:1	chr7	 87921503	 87922127	+	lnc-ADAM22-3	lnc-ADAM22-3:1	ENSG00000228113.1	AC003991.3	STEAP4	NA	chr7:87911503-87931775	inner
CUST_40206_PI429285431	6.50217	P	6.524265	P	0.984801592577916	0	lncRNA	41036-1_{1..3000}	n408037|NR_027822|lncRNA|Homosapiens||RefGeneNoncode|NR_027822||-0.2538840|-0.2061593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408037|NR_027822|lncRNA|Homosapiens||RefGeneNoncode|NR_027822||-0.2538840|-0.2061593	chr6	  1520254	  1523253	+	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50"	NA	inter
CUST_39352_PI429285431	2.1534278	A	1.6305659	A	1.43680263400368	0	lncRNA	40318-1_{1..3000}	n386440|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lal.1||1.1334400|-0.1965963	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386440|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lal.1||1.1334400|-0.1965963	chr7	 72333317	 72336316	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30"	NA	inter
CUST_16973_PI429285431	0.9249938	A	0.91216946	A	1.00892878097932	0	lncRNA	18684-2_{3001..6000}	lnc-S1PR1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-S1PR1-2:2	chr1	101635013	101638012	+	lnc-S1PR1-2	lnc-S1PR1-2:2	XLOC_000318	linc-S1PR1	NA	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60"	NA	inter
CUST_27769_PI429285431	0.9174586	A	0.9178044	A	0.999760338428386	0	lncRNA	29354-1_{1..273}	n324989|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079231|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079231|-1.1854700|-0.2476287	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324989|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079231|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079231|-1.1854700|-0.2476287	chr20	 38759948	 38760220	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2884_PI429285431	2.3793242	A	3.1085036	A	0.603246941074562	0	lncRNA	2865-1_{1..630}	"transcript_id ""ENST00000419226.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419226.1"" | genecode_v17"	chr7	 90941755	 90942384	+	ENSG00000243144.2	ENST00000419226.1	RP11-115N4.1	RP11-115N4.1-002	NA	NA	NA	inter
CUST_10640_PI429285431	0.975882	A	0.911553	A	1.04559851697467	0	lncRNA	12173-1_{1..204}	lnc-CRH-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRH-4:3	chr8	 66933258	 66933461	-	lnc-CRH-4	lnc-CRH-4:3	XLOC_007107	linc-PDE7A	DNAJC5B	NA	chr8:66933791-66943376	inter
CUST_49117_PI429285431	0.9140964	A	0.9166028	A	0.998264204145851	0	lncRNA	52940-2_{3001..4918}	hg19_lincRNAsTranscripts_TCONS_l2_00020549 range=chr4:63796124-63814906 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020549 range=chr4:63796124-63814906 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 63799124	 63801041	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3597_PI429285431	3.633311	P	3.4727204	P	1.11774461858599	0	lncRNA	3567-1_{1..446}	"transcript_id ""ENST00000418372.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418372.1"" | genecode_v17"	chr10	  4285142	  4285587	-	ENSG00000233117.1	ENST00000418372.1	LINC00702	LINC00702-001	NA	NA	NA	inter
CUST_4935_PI429285431	6.1293807	P	6.1240897	P	1.00367417502558	0	lncRNA	4879-1_{1..826}	"transcript_id ""ENST00000554305.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554305.1"" | genecode_v17"	chr14	 88176763	 88177588	-	ENSG00000258807.1	ENST00000554305.1	RP11-1152H15.1	RP11-1152H15.1-001	NA	NA	NA	inter
CUST_47962_PI429285431	0.9194059	A	0.9108167	A	1.00597133754256	0	lncRNA	51853-1_{1..2598}	"gi|410172618|ref|XR_171893.1| PREDICTED: Homo sapiens uncharacterized LOC399886 (FLJ41423), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410172618|ref|XR_171893.1| PREDICTED: Homo sapiens uncharacterized LOC399886 (FLJ41423), misc_RNA"	NA	NA	NA	NA	NA	XR_171893.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30"	NA	Unknown
CUST_45929_PI429285431	8.818783	P	9.127981	P	0.807090299295018	0	lncRNA	50235-1_{1..2106}	"gi|315113914|ref|NR_037648.1| Homo sapiens FAD-dependent oxidoreductase domain containing 1 (FOXRED1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315113914|ref|NR_037648.1| Homo sapiens FAD-dependent oxidoreductase domain containing 1 (FOXRED1), transcript variant 2, non-coding RNA"	Chr11	126139040	126141145	+	55572	NR_037648.1	NA	NA	NA	NA	NA	inter
CUST_5813_PI429285431	4.017017	P	4.829797	P	0.569283819363086	0	lncRNA	5740-1_{1..273}	"transcript_id ""ENST00000584724.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584724.1"" | genecode_v17"	chr17	 32496391	 32496663	-	ENSG00000261156.2	ENST00000584724.1	RP11-215E13.1	RP11-215E13.1-003	NA	NA	NA	inter
CUST_49061_PI429285431	2.1175547	A	1.213533	A	1.87127514185035	0	lncRNA	52887-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00020966 range=chr4:189659760-189663173 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020966 range=chr4:189659760-189663173 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	189659760	189662759	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003607	0.933956	A	0.92464054	A	1.00647787610186	0	lncRNA	TCONS_00008060	NA	NA	NA	NA	XLOC_003527	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003527), lincRNA [TCONS_00008060]"	chr4:43768108-43768167	hs|4p13	Agilent_HUMAN_G3V2	TCONS_00008060	TCONS_00008060	chr4	 43768108	 43768167	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5028_PI429285431	6.983265	P	6.6725373	P	1.24033317020533	0	lncRNA	4968-1_{1..625}	"transcript_id ""ENST00000442197.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442197.1"" | genecode_v17"	chr14	101427364	101427988	+	ENSG00000232018.4	ENST00000442197.1	AL132709.8	AL132709.8-002	NA	NA	NA	inter
CUST_36468_PI429285431	3.5411508	P	1.1639137	A	5.19540818113958	0	lncRNA	37675-2_{3001..4359}	n344975|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_524|NULL|-1.4011800|-0.3524123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344975|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_524|NULL|-1.4011800|-0.3524123	chr7	140422592	140423950	-	NA	NA	NA	NA	BRAF	NA	chr7:140433812-140436316	inter
CUST_2637_PI429285431	5.2138815	P	4.935675	P	1.21268638437542	0	lncRNA	2624-1_{1..655}	"transcript_id ""ENST00000436554.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436554.1"" | genecode_v17"	chr6	135819094	135819748	+	ENSG00000231028.4	ENST00000436554.1	LINC00271	LINC00271-001	AHI1	NA	chr6:135809094-135818903	inter
CUST_4867_PI429285431	0.9152346	A	1.025035	A	0.926716266234608	0	lncRNA	4810-1_{1..608}	"transcript_id ""ENST00000554187.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554187.1"" | genecode_v17"	chr14	 66578299	 66578906	+	ENSG00000258502.1	ENST00000554187.1	RP11-783L4.1	RP11-783L4.1-001	NA	NA	NA	inter
CUST_13878_PI429285431	0.9147668	A	0.9218563	A	0.995097987337097	0	lncRNA	15524-1_{1..560}	lnc-LIN28B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LIN28B-3:1	chr6	103988516	103989075	+	lnc-LIN28B-3	lnc-LIN28B-3:1	XLOC_005406	linc-LIN28B-2	NA	NA	NA	inter
CUST_48_PI429201921	7.5130816	P	8.096002	P	0.667610985744522	0	lncRNA	49-1_{1..1475}	TC09001964.hg.1	TCONS_l2_00028762-XLOC_l2_014816 // Broad TUCP // linc-ANKRD20A1-8 chr9:+:66544444-66545920 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:+:66544444-66545920	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00028762-XLOC_l2_014816	linc-ANKRD20A1-8	chr9	 66544444	 66545920	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17744_PI429285431	6.233751	P	6.3922353	P	0.895965881237694	0	lncRNA	19474-1_{1..618}	lnc-PRKCE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRKCE-1:1	chr2	 45559950	 45560567	+	lnc-PRKCE-1	lnc-PRKCE-1:1	XLOC_001454	linc-PRKCE-1	NA	NA	NA	inter
LNCA_21_P0013400	4.360915	P	4.355233	P	1.00394622821444	0	lncRNA	ENST00000440208	NA	NA	NA	NA	XLOC_l2_013554	NA	ENST00000440208	THC2788696	NA	"BROAD Institute lincRNA (XLOC_l2_013554), lincRNA [TCONS_l2_00027191]"	chr7:108243670-108254393	hs|7q31.1	Agilent_HUMAN_G3V2	ENST00000440208	ENST00000440208	chr7	108243670	108254393	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39962_PI429285431	1.0980713	A	0.90657616	A	1.14194656152948	0	lncRNA	40833-1_{1..2357}	n407018|NR_024517_2|lncRNA|Homosapiens||RefGeneNoncode|NR_024517_2||-1.2139200|-0.3125948	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407018|NR_024517_2|lncRNA|Homosapiens||RefGeneNoncode|NR_024517_2||-1.2139200|-0.3125948	chr6	  4518582	  4520938	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.10;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60"	NA	inter
CUST_40960_PI429285431	1.1724455	A	1.6370885	A	0.724650372395337	0	lncRNA	41635-1_{1..653}	n410985|NR_038447|lncRNA|Homosapiens||RefGeneNoncode|NR_038447||1.5360700|-0.2983268	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410985|NR_038447|lncRNA|Homosapiens||RefGeneNoncode|NR_038447||1.5360700|-0.2983268	chr8	126934766	126935418	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30654_PI429285431	0.92907584	A	1.5864282	A	0.634040824305807	0	lncRNA	32436-1_{1..262}	n336057|X85157|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324122|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324122|1.7749900|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336057|X85157|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324122|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324122|1.7749900|-1.0000000	chr2	 89246830	 89247091	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34756_PI429285431	1.4906961	A	1.2855968	A	1.15276568837159	0	lncRNA	36198-2_{3001..4867}	n341664|CR627240|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4135|NULL|-0.9469710|-0.2923848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n341664|CR627240|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4135|NULL|-0.9469710|-0.2923848	chr9	 23503688	 23505554	-	NA	NA	NA	NA	ELAVL2	NA	chr9:23681883-23682385	inter
CUST_48889_PI429285431	2.2412386	A	0.9125668	A	2.51171330535681	0	lncRNA	52728-1_{1..234}	hg19_lincRNAsTranscripts_TCONS_l2_00019377 range=chr3:90263034-90264881 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019377 range=chr3:90263034-90264881 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 90263034	 90263267	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5362_PI429285431	10.02518	P	10.047023	P	0.984973625939	0	lncRNA	5300-1_{1..643}	"transcript_id ""ENST00000559755.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559755.1"" | genecode_v17"	chr15	101256454	101257096	+	ENSG00000259579.1	ENST00000559755.1	RP11-66B24.5	RP11-66B24.5-001	NA	NA	NA	inter
CUST_50054_PI429285431	0.8998826	A	0.8901285	A	1.00678393425298	0	lncRNA	53790-1_{1..1715}	hg19_lincRNAsTranscripts_TCONS_l2_00027778 range=chr8:58106131-58153837 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027778 range=chr8:58106131-58153837 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 58106131	 58107845	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36691_PI429285431	0.8971668	A	0.8943005	A	1.00198874269441	0	lncRNA	37874-1_{1..224}	n345181|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_730|NULL|-1.4844100|-0.7828067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345181|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_730|NULL|-1.4844100|-0.7828067	chr12	 60011427	 60011650	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_51815_PI429285431	3.6069999	P	1.9033206	A	3.25730609772996	0	lncRNA	55369-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00012434 range=chr19:28284385-28302073 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012434 range=chr19:28284385-28302073 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 28284385	 28287384	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00"	NA	inter
CUST_5285_PI429285431	0.9069949	A	0.89935315	A	1.00531091061811	0	lncRNA	5225-1_{1..1786}	"transcript_id ""ENST00000560153.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000560153.1"" | genecode_v17"	chr15	 88120160	 88121945	+	ENSG00000259527.1	ENST00000560153.1	LINC00052	LINC00052-002	NA	NA	NA	inter
CUST_35901_PI429285431	0.923045	A	1.1668116	A	0.844537506116236	0	lncRNA	37278-1_{1..2253}	n344553|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_101|NULL|-1.2895800|-0.2675413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344553|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_101|NULL|-1.2895800|-0.2675413	chr2	178168168	178170420	+	NA	NA	NA	NA	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.82;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20"	NA	inter
CUST_8876_PI429285431	4.644968	P	5.7410274	P	0.467792488125964	0	lncRNA	10413-1_{1..727}	lnc-SNX10-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SNX10-2:4	chr7	 26438866	 26439592	+	lnc-SNX10-2	lnc-SNX10-2:4	ENSG00000214870	AC004540.5	NA	NA	NA	inter
CUST_2840_PI429285431	3.141037	P	2.7359014	A	1.32421336836418	0	lncRNA	2824-1_{1..3000}	"transcript_id ""ENST00000566570.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000566570.1"" | genecode_v17"	chr7	 56560817	 56563816	+	ENSG00000261275.1	ENST00000566570.1	RP11-760D2.11	RP11-760D2.11-001	NA	NA	NA	inter
LNCA_21_P0003086	2.3749652	A	1.0829751	A	2.44865598168076	0	lncRNA	TCONS_00006372	NA	NA	NA	NA	XLOC_002988	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002988), lincRNA [TCONS_00006372]"	chr3:194570595-194570654	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00006372	TCONS_00006372	chr3	194570595	194570654	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29699_PI429285431	1.6041869	A	2.2972949	A	0.61851993527273	0	lncRNA	31461-1_{1..956}	n333364|BC001876|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086102_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086102_05|0.1738870|-0.3107132	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333364|BC001876|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086102_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086102_05|0.1738870|-0.3107132	chr6	  3081111	  3082066	+	NA	NA	NA	NA	RIPK1	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr6:3077058-3092067"	NA	inner
CUST_51390_PI429285431	6.183164	P	6.1512065	P	1.02239841158179	0	lncRNA	54977-1_{1..2702}	hg19_lincRNAsTranscripts_TCONS_l2_00009669 range=chr16:31711898-31719831 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009669 range=chr16:31711898-31719831 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 31711898	 31714599	+	NA	NA	NA	NA	ZNF720	NA	chr16:31724550-31729831	inter
CUST_35069_PI429285431	0.90737575	A	0.9036513	A	1.00258492719471	0	lncRNA	36479-1_{1..1234}	n342020|BC034929|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4501|NULL|1.0929300|-0.2043969	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342020|BC034929|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4501|NULL|1.0929300|-0.2043969	chr19	 55701075	 55702308	+	NA	NA	NA	NA	PTPRH	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-43.44;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_PTPRH:range=chr19:55693122-557208015'pad=0,hg19_refFlat_PTPRH:range=chr19:55693122-557208015'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90chr19:55692615-55714619"	NA	inner
LNCA_21_P0014161	2.7171469	A	2.8299036	A	0.92481922898348	0	lncRNA	XR_108647	XR_108647	XR_108647	NA	NA	LOC100505711	uncharacterized LOC100505711	NA	THC2674101	NA	"PREDICTED: Homo sapiens hypothetical LOC100505711 (LOC100505711), miscRNA [XR_108647]"	chr6:41349215-41349156	hs|6p21.1	Agilent_HUMAN_G3V2	XR_108647	XR_108647	chr6	 41349156	 41349215	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38698_PI429285431	1.8180084	A	2.6360457	A	0.567213077330378	0	lncRNA	39693-2_{3001..4801}	n384099|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zuh.2||3.3641400|-0.2249792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384099|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zuh.2||3.3641400|-0.2249792	chr22	 21403248	 21405048	+	NA	NA	NA	NA	NA	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40"	NA	inter
CUST_10053_PI429285431	1.8764281	A	2.1169767	A	0.846423389741164	0	lncRNA	11578-1_{1..434}	lnc-IRF2BPL-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRF2BPL-1:3	chr14	 77542448	 77542881	-	lnc-IRF2BPL-1	lnc-IRF2BPL-1:3	XLOC_011081	linc-C14orf4-2	NA	NA	NA	inter
CUST_1488_PI429285431	0.9171896	A	1.3975348	A	0.716806090134942	0	lncRNA	1475-1_{1..376}	"transcript_id ""ENST00000470219.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000470219.2"" | genecode_v17"	chr3	147909506	147909881	+	ENSG00000244650.2	ENST00000470219.2	RP11-501O2.3	RP11-501O2.3-001	NA	NA	NA	inter
CUST_38249_PI429285431	0.9185158	A	0.90354013	A	1.01043440610352	0	lncRNA	39307-1_{1..588}	n381763|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pia.1||2.0984400|-0.3045138	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381763|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pia.1||2.0984400|-0.3045138	chr11	104774117	104774704	-	NA	NA	NA	NA	CASP12	NA	chr11:104764117-104769397	inter
CUST_13727_PI429285431	6.467366	P	6.967398	P	0.707091097230193	0	lncRNA	15367-1_{1..745}	lnc-SLC35G3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC35G3-1:2	chr17	 33569645	 33570389	-	lnc-SLC35G3-1	lnc-SLC35G3-1:2	XLOC_012444	linc-AMAC1	SLFN5	NA	chr17:33570086-33579901	inter
CUST_39158_PI429285431	8.280825	P	8.287788	P	0.995185244457113	0	lncRNA	40135-1_{1..493}	n385818|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004eri.2||-1.1658900|-0.1637408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385818|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004eri.2||-1.1658900|-0.1637408	chrX	118672112	118672604	-	NA	NA	NA	NA	CXorf56	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90chrX:118672112-118682605"	NA	inner
CUST_20851_PI429285431	6.3360176	P	6.475196	P	0.908036125340623	0	lncRNA	22482-1_{1..321}	lnc-ANKRD10-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD10-3:1	chr13	111797032	111797352	-	lnc-ANKRD10-3	lnc-ANKRD10-3:1	ENSG00000227352.1	ARHGEF7-AS1	ARHGEF7	NA	chr13:111787032-111807080	inner
LNCA_21_P0002612	6.9418745	P	6.8088255	P	1.09660883341013	0	lncRNA	TCONS_00004898	NA	NA	NA	NA	XLOC_001680	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001680), lincRNA [TCONS_00004898]"	chr2:133095079-133095138	hs|2q21.2	Agilent_HUMAN_G3V2	TCONS_00004898	TCONS_00004898	chr2	133095079	133095138	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7919_PI429285431	5.6598916	P	5.1221805	P	1.45166755404817	0	lncRNA	9532-1_{1..472}	lnc-LXN-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LXN-1:2	chr3	158288558	158289029	-	lnc-LXN-1	lnc-LXN-1:2	ENSG00000243150	RP11-538P18.2	MLF1	NA	chr3:158288953-158298696	inter
CUST_14237_PI429285431	1.3276323	A	2.3912635	A	0.478426364829065	0	lncRNA	15895-1_{1..757}	lnc-CCL28-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCL28-1:1	chr5	 43363158	 43363914	-	lnc-CCL28-1	lnc-CCL28-1:1	XLOC_004806	linc-HMGCS1	NA	NA	NA	inter
CUST_41561_PI429285431	4.3213882	P	3.78048	P	1.45488810483358	0	lncRNA	42867-1_{1..67}	ENST00000584521 ncrna:miRNA chromosome:GRCh37:HG183_PATCH:62578133:62578199:-1 gene:ENSG00000265387 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584521 ncrna:miRNA chromosome:GRCh37:HG183_PATCH:62578133:62578199:-1 gene:ENSG00000265387 gene_biotype:miRNA transcript_biotype:miRNA	chrHG183_PATCH	 62578133	 62578199	-	ENSG00000265387	ENST00000584521	NA	NA	NA	NA	NA	Unknown
CUST_6299_PI429285431	2.312312	A	3.1435375	P	0.562051603721923	0	lncRNA	6223-1_{1..581}	"transcript_id ""ENST00000592720.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592720.1"" | genecode_v17"	chr19	  1875015	  1875595	+	ENSG00000267232.1	ENST00000592720.1	CTB-31O20.9	CTB-31O20.9-001	FAM108A1	NA	chr19:1876975-1885518	inter
CUST_34674_PI429285431	3.9690611	P	1.8952392	A	4.2100048637071	0	lncRNA	36127-1_{1..863}	n341579|AF064841|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4050|NULL|1.3448100|-0.2239920	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341579|AF064841|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4050|NULL|1.3448100|-0.2239920	chr8	105509981	105510843	-	NA	NA	NA	NA	LRP12	NA	chr8:105501459-105601252	inner
CUST_14881_PI429285431	0.89585567	A	0.88923466	A	1.00459988153773	0	lncRNA	16546-1_{1..2291}	lnc-CIT-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CIT-2:1	chr12	119741140	119743430	-	lnc-CIT-2	lnc-CIT-2:1	XLOC_010217	linc-TAOK3-2	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00"	NA	inter
CUST_11200_PI429285431	1.0702512	A	0.88829416	A	1.134421704074	0	lncRNA	12758-1_{1..498}	lnc-AMMECR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AMMECR1-1:1	chrX	109839187	109839684	-	lnc-AMMECR1-1	lnc-AMMECR1-1:1	XLOC_008208	linc-AMMECR1	NA	NA	NA	inter
CUST_37478_PI429285431	0.8959216	A	0.89186496	A	1.00281580553268	0	lncRNA	38579-2_{3001..6000}	n345937|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1486|NULL|-1.3000400|-0.2079454	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345937|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1486|NULL|-1.3000400|-0.2079454	chr16	 50542773	 50545772	+	NA	NA	NA	NA	NKD1	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70chr16:50582241-50590961"	NA	inter
CUST_28236_PI429285431	0.91488266	A	0.9015736	A	1.00926782014545	0	lncRNA	29871-1_{1..873}	n325527|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000134071|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000134071|-1.0962700|-0.4667603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325527|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000134071|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000134071|-1.0962700|-0.4667603	chr18	 59898222	 59899094	-	NA	NA	NA	NA	KIAA1468	"hg19_refFlat_KIAA1468:range=chr18:59854739-599727675'pad=0,hg19_refFlat_KIAA1468:range=chr18:59854739-599727675'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90chr18:59888222-59974355"	NA	inner
CUST_24969_PI429285431	1.6078259	A	1.6157222	A	0.994541653124185	0	lncRNA	26508-1_{1..635}	lnc-SCN2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SCN2A-1:1	chr2	165947630	165948264	+	lnc-SCN2A-1	lnc-SCN2A-1:1	ENSG00000236283.1	AC013463.2	SCN3A	"hg19_refFlat_SCN1A:range=chr2:166847755-1669301315'pad=0,hg19_refFlat_SCN1A:range=chr2:166847755-1669301315'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SCN9A:range=chr2:167055182-1671682665'pad=0,hg19_refFlat_SCN9A:range=chr2:167055182-1671682665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_SCN2A:range=chr2:166152334-1662463345'pad=0,hg19_refFlat_SCN2A:range=chr2:166152334-1662463345'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SCN3A:range=chr2:165946660-1660329045'pad=0,hg19_refFlat_SCN3A:range=chr2:165946660-1660329045'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20chr2:165944030-165957803"	NA	inner
CUST_12568_PI429285431	0.9065285	A	0.8976215	A	1.00619295950454	0	lncRNA	14177-1_{1..913}	lnc-C3orf30-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C3orf30-2:1	chr3	118215386	118216298	+	lnc-C3orf30-2	lnc-C3orf30-2:1	XLOC_002775	linc-C3orf30-1	NA	NA	NA	inter
CUST_43918_PI429285431	0.9058238	A	0.90434325	A	1.00102676582166	0	lncRNA	48631-1_{1..2874}	"gi|323510691|ref|NR_037883.1| Homo sapiens uncharacterized LOC100506421 (LOC100506421), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|323510691|ref|NR_037883.1| Homo sapiens uncharacterized LOC100506421 (LOC100506421), non-coding RNA"	Chr2	105421883	105424756	-	100506421	NR_037883.1	NA	NA	NA	NA	NA	inter
CUST_1037_PI429285431	0.93054634	A	0.91576	A	1.01030181190421	0	lncRNA	1027-1_{1..561}	"transcript_id ""ENST00000424612.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424612.1"" | genecode_v17"	chr2	114435279	114435839	-	ENSG00000227359.1	ENST00000424612.1	AC017074.2	AC017074.2-001	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00"	NA	inter
CUST_37981_PI429285431	0.91504526	A	0.91709834	A	0.998577925494128	0	lncRNA	39068-1_{1..767}	n346536|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2086|NULL|-1.4200600|-0.2854617	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346536|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2086|NULL|-1.4200600|-0.2854617	chr15	 39177381	 39178147	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50576_PI429285431	1.7474574	A	1.5670878	A	1.13317415282378	0	lncRNA	54269-1_{1..417}	hg19_lincRNAsTranscripts_TCONS_l2_00030953 range=chrY:28425310-28437202 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030953 range=chrY:28425310-28437202 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrY	 28425310	 28425726	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29456_PI429285431	2.8385558	A	3.429606	P	0.663859479142549	0	lncRNA	31213-1_{1..229}	n332859|AF079569|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066429|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066429|-0.3210100|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332859|AF079569|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066429|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066429|-0.3210100|-1.0000000	chr11	 66488610	 66488838	-	NA	NA	NA	NA	SPTBN2	NA	chr11:66478610-66488870	inner
CUST_23180_PI429285431	1.0772619	A	1.6717421	A	0.662283031404235	0	lncRNA	24752-1_{1..1539}	lnc-CTU2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTU2-3:1	chr16	 88804912	 88806450	+	lnc-CTU2-3	lnc-CTU2-3:1	ENSG00000224888.3	RP5-1142A6.2	FAM38A	"hg19_refFlat_PIEZO1:range=chr16:88782013-888513725'pad=0,hg19_refFlat_PIEZO1:range=chr16:88782013-888513725'pad=0 3'pad=0 strand=- repeatMasking=none,-105.20chr16:88794912-88815596"	NA	inner
CUST_48614_PI429285431	2.267898	A	2.5471387	A	0.824024592787132	0	lncRNA	52461-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00015350 range=chr2:65908047-65928945 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015350 range=chr2:65908047-65928945 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 65908047	 65911046	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6903_PI429285431	1.159332	A	0.91573334	A	1.18394220789044	0	lncRNA	6853-1_{1..2323}	"transcript_id ""ENST00000441947.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000441947.1"" | genecode_v17"	chr21	 46720160	 46722482	-	ENSG00000184274.3	ENST00000441947.1	LINC00315	LINC00315-001	NA	NA	NA	inter
CUST_51924_PI429285431	1.0232928	A	1.2092294	A	0.879078191621096	0	lncRNA	55464-1_{1..762}	hg19_lincRNAsTranscripts_TCONS_l2_00016422 range=chr20:1394556-1404641 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016422 range=chr20:1394556-1404641 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	  1394556	  1395317	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004041	0.92046314	A	0.90717924	A	1.00925021908895	0	lncRNA	ENST00000504436	NA	NA	NA	NA	XLOC_004493	NA	ENST00000504436	NA	NA	"BROAD Institute lincRNA (XLOC_004493), lincRNA [TCONS_00009475]"	chr5:101953219-101953278	hs|5q21.1	Agilent_HUMAN_G3V2	ENST00000504436	ENST00000504436	chr5	101953219	101953278	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50602_PI429285431	6.7283487	P	6.927227	P	0.871227682335259	0	lncRNA	54289-2_{3001..3067}	hg19_lincRNAsTranscripts_TCONS_l2_00003718 range=chr10:96857903-96880251 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003718 range=chr10:96857903-96880251 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 96860903	 96860969	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35520_PI429285431	1.9048771	A	1.8606513	A	1.03112969098935	0	lncRNA	36926-1_{1..1007}	n342624|CR599612|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5126|NULL|-1.2420500|-0.3283020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342624|CR599612|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5126|NULL|-1.2420500|-0.3283020	chr4	166143200	166144206	+	NA	NA	NA	NA	KLHL2	NA	chr4:166133200-166154207	inner
CUST_36869_PI429285431	0.9299464	A	0.9160178	A	1.00970132552595	0	lncRNA	38028-1_{1..625}	n345338|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_887|NULL|-1.2730900|-0.2958681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345338|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_887|NULL|-1.2730900|-0.2958681	chr16	 82168722	 82169346	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6924_PI429285431	1.7241338	A	2.1657813	A	0.736293310878242	0	lncRNA	6876-1_{1..287}	"transcript_id ""ENST00000452326.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452326.1"" | genecode_v17"	chr22	 19654546	 19654832	+	ENSG00000225007.1	ENST00000452326.1	AC000067.1	AC000067.1-001	NA	NA	NA	inter
LNCA_21_P0003346	0.92398095	A	0.91127753	A	1.00884422079705	0	lncRNA	ENST00000512268	NA	NA	NA	NA	XLOC_003492	NA	ENST00000512268	THC2737086	NA	"BROAD Institute lincRNA (XLOC_003492), lincRNA [TCONS_00007501]"	chr4:29222703-29222762	hs|4p15.1	Agilent_HUMAN_G3V2	ENST00000512268	ENST00000512268	chr4	 29222703	 29222762	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36426_PI429285431	0.9131678	A	1.2553368	A	0.788854427554263	0	lncRNA	37641-1_{1..3000}	n344940|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_489|NULL|-1.2909300|-0.3620517	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344940|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_489|NULL|-1.2909300|-0.3620517	chr7	 93237403	 93240402	-	NA	NA	NA	NA	NA	"hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90"	NA	inter
CUST_2788_PI429285431	7.2684426	P	7.4884477	P	0.858562401370839	0	lncRNA	2772-1_{1..556}	"transcript_id ""ENST00000523331.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523331.1"" | genecode_v17"	chr7	 27226192	 27226747	-	ENSG00000253508.1	ENST00000523331.1	RP1-170O19.14	RP1-170O19.14-001	HOXA10	NA	chr7:27216192-27219880	inter
CUST_5294_PI429285431	1.11543	A	0.910131	A	1.15292526696235	0	lncRNA	5234-1_{1..606}	"transcript_id ""ENST00000560596.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560596.1"" | genecode_v17"	chr15	 89921280	 89921885	+	ENSG00000255571.2	ENST00000560596.1	CTD-2335A18.1	CTD-2335A18.1-012	NA	NA	NA	inter
CUST_47423_PI429285431	4.244022	P	3.6423585	P	1.51746527198394	0	lncRNA	51460-3_{6001..7181}	"gi|223972655|ref|NR_026943.1| Homo sapiens uncharacterized LOC642852 (LOC642852), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223972655|ref|NR_026943.1| Homo sapiens uncharacterized LOC642852 (LOC642852), non-coding RNA"	Chr21	 46713967	 46715147	+	642852	NR_026943.1	NA	NA	NA	NA	NA	inter
CUST_26351_PI429285431	0.9105562	A	0.909736	A	1.00056868095523	0	lncRNA	27858-1_{1..567}	lnc-AC021860.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC021860.1-2:1	chr4	 38666415	 38666981	-	lnc-AC021860.1-2	lnc-AC021860.1-2:1	ENSG00000231160.3	RP11-617D20.1	KLF3	NA	chr4:38665790-38676504	inner
LNCA_21_P0014503	5.587348	P	5.6547966	P	0.954324224865807	0	lncRNA	XR_110124	XR_110124	XR_110124	NA	Hs.594897	LOC100507398	uncharacterized LOC100507398	NA	THC2605193	NA	"PREDICTED: Homo sapiens hypothetical LOC100507398 (LOC100507398), miscRNA [XR_110124]"	chr13:52028785-52028844	hs|13q14.3	Agilent_HUMAN_G3V2	XR_110124	XR_110124	chr13	 52028785	 52028844	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23544_PI429285431	0.8972879	A	0.89516634	A	1.00147163512615	0	lncRNA	25111-1_{1..459}	lnc-KIAA0319L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0319L-2:1	chr1	 35831567	 35832025	-	lnc-KIAA0319L-2	lnc-KIAA0319L-2:1	ENSG00000227409.1	ZMYM4-AS1	ZMYM4	"hg19_refFlat_ZMYM4:range=chr1:35734648-358852785'pad=0,hg19_refFlat_ZMYM4:range=chr1:35734648-358852785'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60chr1:35821567-35841678"	NA	inner
CUST_40654_PI429285431	5.418789	P	5.6058445	P	0.878396675959423	0	lncRNA	41393-1_{1..1741}	n410204|NR_037156|lncRNA|Homosapiens||RefGeneNoncode|NR_037156||7.1297600|-0.2213039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410204|NR_037156|lncRNA|Homosapiens||RefGeneNoncode|NR_037156||7.1297600|-0.2213039	chr17	 56597610	 56599350	-	NA	NA	NA	NA	4-Sep	NA	chr17:56597611-56615374	inner
CUST_28804_PI429285431	1.2449961	A	0.90833294	A	1.26283238170192	0	lncRNA	30512-1_{1..577}	n326213|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092503|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092503|-0.7487380|-0.2545935	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326213|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092503|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092503|-0.7487380|-0.2545935	chr1	221055025	221055601	+	NA	NA	NA	NA	HLX	NA	chr1:221052743-221058401	inner
CUST_8941_PI429285431	3.1433	P	3.5267026	P	0.766627364142241	0	lncRNA	10475-2_{3001..3105}	lnc-ZNF30-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ZNF30-1:1	chr19	 35419828	 35419932	+	lnc-ZNF30-1	lnc-ZNF30-1:1	ENSG00000248495	XLOC_013047	ZNF30	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50chr19:35417807-35427732"	NA	inter
CUST_42677_PI429285431	5.4592586	P	5.4916534	P	0.977795858588487	0	lncRNA	45593-1_{1..135}	ENST00000384452 ncrna:snoRNA chromosome:GRCh37:1:235291118:235291252:-1 gene:ENSG00000207181 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384452 ncrna:snoRNA chromosome:GRCh37:1:235291118:235291252:-1 gene:ENSG00000207181 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	235291118	235291252	-	ENSG00000207181	ENST00000384452	NA	NA	TOMM20	NA	chr1:235281118-235292256	inner
CUST_23984_PI429285431	1.0116676	A	0.9224713	A	1.0637774056974	0	lncRNA	25539-1_{1..670}	lnc-MRPS14-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPS14-2:1	chr1	174923294	174923963	-	lnc-MRPS14-2	lnc-MRPS14-2:1	ENSG00000229531.1	RP1-102G20.5	RABGAP1L	NA	chr1:174913294-174927327	inner
CUST_33202_PI429285431	1.1328856	A	1.2285897	A	0.93581541599739	0	lncRNA	34793-1_{1..1673}	n339897|AK130936|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2346|NULL|-1.1744900|-0.4429763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339897|AK130936|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2346|NULL|-1.1744900|-0.4429763	chr4	 30729934	 30731606	+	NA	NA	NA	NA	PCDH7	NA	chr4:30722030-30741607	inner
CUST_10829_PI429285431	0.89905405	A	0.9190363	A	0.986244838546432	0	lncRNA	12363-1_{1..486}	lnc-FGGY-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGGY-2:1	chr1	 59615573	 59616058	+	lnc-FGGY-2	lnc-FGGY-2:1	XLOC_000221	linc-FGGY-1	NA	NA	NA	inter
CUST_27340_PI429285431	0.9058554	A	0.90072405	A	1.0035631136357	0	lncRNA	28900-1_{1..566}	n324496|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040964|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040964|-1.2589400|-0.4699471	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324496|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040964|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040964|-1.2589400|-0.4699471	chr6	 53601136	 53601701	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36920_PI429285431	1.2722827	A	0.9069085	A	1.2882157180021	0	lncRNA	38078-1_{1..3000}	n345392|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_941|NULL|-1.3307700|-0.3408934	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n345392|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_941|NULL|-1.3307700|-0.3408934	chr21	 29949540	 29952539	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0,hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40"	NA	inter
CUST_6897_PI429285431	1.8890891	A	1.7097348	A	1.13237695941695	0	lncRNA	6847-1_{1..821}	"transcript_id ""ENST00000411956.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411956.1"" | genecode_v17"	chr21	 45595372	 45596192	+	ENSG00000237604.1	ENST00000411956.1	AP001056.1	AP001056.1-001	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40"	NA	inter
LNCA_21_P0005914	6.424391	P	6.8385544	P	0.750454547274517	0	lncRNA	TCONS_00015182	NA	NA	NA	NA	XLOC_007236	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007236), lincRNA [TCONS_00015182]"	chr8:137909266-137809593	hs|8q24.23	Agilent_HUMAN_G3V2	TCONS_00015182	TCONS_00015182	chr8	137809593	137909266	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37345_PI429285431	2.375533	A	3.3128793	P	0.522192520929601	0	lncRNA	38449-1_{1..499}	n345788|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1337|NULL|-1.3080500|-0.3279078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345788|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1337|NULL|-1.3080500|-0.3279078	chr12	 46668825	 46669323	+	NA	NA	NA	NA	SLC38A1	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-26.20chr12:46658825-46663208"	NA	inter
CUST_25540_PI429285431	0.9122623	A	0.9062676	A	1.00416385425547	0	lncRNA	27070-1_{1..410}	lnc-C1orf31-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf31-1:1	chr1	234501250	234501659	+	lnc-C1orf31-1	lnc-C1orf31-1:1	ENSG00000236358.1	RP5-827C21.2	C1orf31	"hg19_refFlat_RPS15:range=chr19:1438425-14404615'pad=0,hg19_refFlat_RPS15:range=chr19:1438425-14404615'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.10chr1:234509214-234511574"	NA	inter
CUST_18567_PI429285431	2.5861263	A	3.304272	P	0.607878247928532	0	lncRNA	20276-2_{3001..3485}	lnc-TEAD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TEAD4-1:1	chr12	  3155644	  3156128	+	lnc-TEAD4-1	lnc-TEAD4-1:1	ENSG00000250899	RP11-253E3.3	TEAD4	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80chr12:3142644-3149842"	NA	inter
CUST_39331_PI429285431	6.6084228	P	6.575511	P	1.02307492154242	0	lncRNA	40298-1_{1..1252}	n386388|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010iyc.2||2.5998100|-0.1385608	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386388|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010iyc.2||2.5998100|-0.1385608	chr5	 69790941	 69792192	-	NA	NA	NA	NA	LOC100652848	NA	chr5:69825252-69826273	inter
CUST_45944_PI429285431	3.3029513	P	3.6595101	P	0.781025306542729	0	lncRNA	50245-1_{1..1442}	"gi|341915579|ref|XR_132810.1| PREDICTED: Homo sapiens uncharacterized LOC100507548 (LOC100507548), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915579|ref|XR_132810.1| PREDICTED: Homo sapiens uncharacterized LOC100507548 (LOC100507548), misc_RNA"	Chr11	134855252	134856693	+	100507548	XR_132810.2	NA	NA	NA	NA	NA	inter
CUST_14092_PI429285431	9.076646	P	9.06714	P	1.00661081269183	0	lncRNA	15738-1_{1..297}	lnc-COL4A2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL4A2-3:1	chr13	110460336	110460632	+	lnc-COL4A2-3	lnc-COL4A2-3:1	XLOC_010495	linc-COL4A2-3	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-19.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.30"	NA	inter
CUST_3610_PI429285431	1.224613	A	2.2824495	A	0.480351866959793	0	lncRNA	3580-1_{1..2214}	"transcript_id ""ENST00000355358.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000355358.1"" | genecode_v17"	chr10	  8092413	  8094626	-	ENSG00000197308.4	ENST00000355358.1	GATA3-AS1	GATA3-AS1-001	GATA3	NA	chr10:8096667-8105447	inter
CUST_34090_PI429285431	1.2895603	A	1.0202563	A	1.20522624958947	0	lncRNA	35617-2_{3001..4412}	n340913|AL833696|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3378|NULL|1.1576800|-0.1694017	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340913|AL833696|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3378|NULL|1.1576800|-0.1694017	chr17	 78177028	 78178439	-	NA	NA	NA	NA	CARD14	"hg19_refFlat_CARD14:range=chr17:78155238-781762235'pad=0,hg19_refFlat_CARD14:range=chr17:78155238-781762235'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.40;hg19_refFlat_CARD14:range=chr17:78155238-781821445'pad=0,hg19_refFlat_CARD14:range=chr17:78155238-781821445'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr17:78164028-78182851"	NA	inner
CUST_43558_PI429285431	0.91730505	A	0.9073748	A	1.00690686793761	0	lncRNA	48333-1_{1..2181}	"gi|336391095|ref|NR_038846.1| Homo sapiens uncharacterized LOC643441 (LOC643441), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336391095|ref|NR_038846.1| Homo sapiens uncharacterized LOC643441 (LOC643441), non-coding RNA"	Chr1	113739403	113741583	-	643441	NR_038846.1	NA	NA	NA	NA	NA	inter
CUST_27177_PI429285431	0.9269009	A	0.9135807	A	1.00927561339809	0	lncRNA	28717-1_{1..205}	n324306|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043123|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043123|-1.4153100|-0.4607113	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324306|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043123|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043123|-1.4153100|-0.4607113	chr6	167575368	167575572	+	NA	NA	NA	NA	TCP10L2	NA	chr6:167584081-167589394	inter
LNCA_21_P0012901	7.041048	P	7.4499903	P	0.753175355655831	0	lncRNA	TCONS_l2_00022844	NA	NA	NA	NA	XLOC_l2_011996	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011996), lincRNA [TCONS_l2_00022844]"	chr5:36488458-36488399	hs|5p13.2	Agilent_HUMAN_G3V2	TCONS_l2_00022844	TCONS_l2_00022844	chr5	 36488399	 36488458	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6821_PI429285431	3.5493944	P	3.8297324	P	0.823398085879255	0	lncRNA	6769-1_{1..479}	"transcript_id ""ENST00000424017.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424017.1"" | genecode_v17"	chr21	 26427848	 26428326	+	ENSG00000244278.1	ENST00000424017.1	AP000235.3	AP000235.3-001	NA	NA	NA	inter
CUST_19513_PI429285431	0.9202082	A	0.9187383	A	1.00101937625186	0	lncRNA	21169-1_{1..665}	lnc-GDE1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GDE1-2:1	chr16	 19422890	 19423554	-	lnc-GDE1-2	lnc-GDE1-2:1	ENSG00000260681.1	CTA-363E6.5	TMC5	NA	chr16:19422057-19432984	inner
CUST_32482_PI429285431	0.9330352	A	0.93517506	A	0.998517861527928	0	lncRNA	34151-1_{1..1521}	n339086|BC033565|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1516|NULL|-0.8382260|-0.2115130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n339086|BC033565|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1516|NULL|-0.8382260|-0.2115130	chr2	201593648	201595168	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17412_PI429285431	2.8430188	A	2.9407365	A	0.934510189694703	0	lncRNA	19137-1_{1..497}	lnc-POLN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLN-1:1	chr4	  2043443	  2043939	-	lnc-POLN-1	lnc-POLN-1:1	XLOC_003854	linc-WHSC2-1	C4orf48	NA	chr4:2043720-2045697	inter
CUST_33500_PI429285431	0.902001	A	1.6161121	A	0.609580602250279	0	lncRNA	35072-1_{1..1630}	n340239|BC029602|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2700|NULL|-0.8130610|-0.2450584	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340239|BC029602|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2700|NULL|-0.8130610|-0.2450584	chr4	142128796	142130425	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25873_PI429285431	1.6282022	A	1.7222035	A	0.936920602621009	0	lncRNA	27394-1_{1..1737}	lnc-AGGF1-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AGGF1-3:10	chr5	 76443477	 76445213	+	lnc-AGGF1-3	lnc-AGGF1-3:10	ENSG00000250802.2	CTC-564N23.3	NA	NA	NA	inter
CUST_13089_PI429285431	8.911121	P	9.230595	P	0.801361997245176	0	lncRNA	14714-3_{6001..9000}	lnc-SLITRK5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK5-1:2	chr13	 88350720	 88353719	+	lnc-SLITRK5-1	lnc-SLITRK5-1:2	XLOC_010463	linc-GPC5-8	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30"	NA	inter
CUST_28916_PI429285431	0.9167338	A	0.91492283	A	1.00125605692915	0	lncRNA	30633-1_{1..418}	n326341|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000083614|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000083614|1.1033200|-0.3432721	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326341|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000083614|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000083614|1.1033200|-0.3432721	chr1	166999226	166999643	-	NA	NA	NA	NA	MAEL	NA	chr1:166989226-166991447	inter
CUST_6607_PI429285431	8.398	P	8.053548	P	1.26966861409543	0	lncRNA	6555-1_{1..1328}	"transcript_id ""ENST00000602145.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602145.1"" | genecode_v17"	chr19	 57183942	 57185269	-	ENSG00000268568.1	ENST00000602145.1	AC007228.9	AC007228.9-001	ZNF835	NA	chr19:57174020-57183123	inter
CUST_22344_PI429285431	3.9861643	P	4.153881	P	0.890250533336855	0	lncRNA	23938-1_{1..444}	lnc-DCTD-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DCTD-2:1	chr4	183694683	183695126	-	lnc-DCTD-2	lnc-DCTD-2:1	ENSG00000248694.1	RP11-18D7.2	ODZ3	"hg19_refFlat_TENM3:range=chr4:183245174-1837215045'pad=0,hg19_refFlat_TENM3:range=chr4:183245174-1837215045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90chr4:183684683-183705084"	NA	inner
CUST_11069_PI429285431	0.91281843	A	0.91647613	A	0.997467886778278	0	lncRNA	12620-2_{3001..5610}	lnc-LCP2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-LCP2-2:4	chr5	169627756	169630365	-	lnc-LCP2-2	lnc-LCP2-2:4	XLOC_005077	linc-FAM196B	NA	NA	NA	inter
LNCA_21_P0013808	2.4344678	A	2.7141206	A	0.82378924711131	0	lncRNA	THC2666070	NA	NA	NA	NA	XLOC_l2_015673	NA	NA	THC2666070	NA	"BROAD Institute lincRNA (XLOC_l2_015673), lincRNA [TCONS_l2_00030438]"	chrX:005637619-005637560	hs|Xp22.32	Agilent_HUMAN_G3V2	THC2666070	THC2666070	chrX	  5637560	  5637619	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11047_PI429285431	5.110973	P	4.9229155	P	1.13922878137732	0	lncRNA	12594-1_{1..469}	lnc-SLC15A4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC15A4-2:1	chr12	128602670	128603138	-	lnc-SLC15A4-2	lnc-SLC15A4-2:1	XLOC_010257	linc-DHX37-11	NA	NA	NA	inter
CUST_1069_PI429285431	1.8125056	A	2.1241052	A	0.805747884170142	0	lncRNA	1058-1_{1..660}	"transcript_id ""ENST00000413403.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413403.1"" | genecode_v17"	chr2	129821419	129822078	-	ENSG00000238277.1	ENST00000413403.1	AC068483.1	AC068483.1-001	NA	NA	NA	inter
CUST_15499_PI429285431	0.91214	A	0.9209475	A	0.993913703207846	0	lncRNA	17189-1_{1..1229}	lnc-TGFBRAP1-7:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGFBRAP1-7:5	chr2	105371294	105372522	-	lnc-TGFBRAP1-7	lnc-TGFBRAP1-7:5	XLOC_002240	linc-MFSD9-14	NA	NA	NA	inter
CUST_10732_PI429285431	1.4095021	A	0.9127612	A	1.41102240888009	0	lncRNA	12270-1_{1..621}	lnc-NEURL1B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NEURL1B-3:2	chr5	171962482	171963102	+	lnc-NEURL1B-3	lnc-NEURL1B-3:2	XLOC_004632	linc-NEURL1B-2	NA	NA	NA	inter
CUST_1775_PI429285431	1.4118415	A	0.9082023	A	1.4177854209236	0	lncRNA	1761-1_{1..560}	"transcript_id ""ENST00000511330.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511330.1"" | genecode_v17"	chr4	 58020743	 58021302	+	ENSG00000250192.1	ENST00000511330.1	RP11-300M6.1	RP11-300M6.1-001	NA	NA	NA	inter
CUST_45660_PI429285431	5.676698	P	4.8261456	P	1.80319122506433	0	lncRNA	50036-1_{1..1174}	"gi|375065848|ref|NR_046310.1| Homo sapiens polycomb group ring finger 5 (PCGF5), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375065848|ref|NR_046310.1| Homo sapiens polycomb group ring finger 5 (PCGF5), transcript variant 3, non-coding RNA"	Chr10	 92980359	 92981532	+	84333	NR_046310.1	NA	NA	NA	NA	NA	inter
CUST_11812_PI429285431	0.910834	A	0.91038036	A	1.0003144887282	0	lncRNA	13394-1_{1..382}	lnc-APOC3-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APOC3-6:2	chr11	115799965	115800346	+	lnc-APOC3-6	lnc-APOC3-6:2	XLOC_009284	linc-APOC3-3	NA	NA	NA	inter
CUST_49967_PI429285431	0.90311855	A	1.5162567	A	0.653773067084477	0	lncRNA	53715-1_{1..629}	hg19_lincRNAsTranscripts_TCONS_l2_00026969 range=chr7:149584361-149606795 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026969 range=chr7:149584361-149606795 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	149584361	149584989	-	NA	NA	NA	NA	ATP6V0E2	NA	chr7:149574361-149577787	inter
CUST_40169_PI429285431	6.6525407	P	6.731616	P	0.946664219771329	0	lncRNA	41004-1_{1..1311}	n407895|NR_027462|lncRNA|Homosapiens||RefGeneNoncode|NR_027462||3.5436300|-0.0864689	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407895|NR_027462|lncRNA|Homosapiens||RefGeneNoncode|NR_027462||3.5436300|-0.0864689	chr17	  7531286	  7532596	+	NA	NA	NA	NA	SHBG	NA	chr17:7521286-7536700	inner
CUST_22813_PI429285431	9.179727	P	8.853154	P	1.25403098921369	0	lncRNA	24393-1_{1..476}	lnc-TMEM43-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM43-1:1	chr3	 14186822	 14187297	+	lnc-TMEM43-1	lnc-TMEM43-1:1	ENSG00000228242.1	AC093495.4	XPC	NA	chr3:14186647-14197021	inner
CUST_29276_PI429285431	1.1508411	A	0.91522914	A	1.17740606146882	0	lncRNA	31027-1_{1..343}	n332385|AM991283|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500229|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500229|-1.0032600|-0.1658842	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332385|AM991283|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500229|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500229|-1.0032600|-0.1658842	chr18	 45567404	 45567746	-	NA	NA	NA	NA	ZBTB7C	NA	chr18:45557404-45663680	inner
LNCA_19_P00812314	6.63413	P	6.610626	P	1.01642516522497	0	lncRNA	TCONS_l2_00003442	NA	NA	NA	NA	XLOC_l2_001890	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001890), lincRNA [TCONS_l2_00003442]"	chr10:27255704-27255645	hs|10p12.1	Agilent_HUMAN_G3V2	TCONS_l2_00003442	TCONS_l2_00003442	chr10	 27255645	 27255704	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33919_PI429285431	6.641288	P	6.754935	P	0.924248690834353	0	lncRNA	35460-2_{3001..5634}	n340713|AL833484|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3176|NULL|-0.9080490|-0.3083337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340713|AL833484|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3176|NULL|-0.9080490|-0.3083337	chr5	159206778	159209411	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21574_PI429285431	4.043046	P	3.6865504	P	1.28031215593267	0	lncRNA	23188-1_{1..619}	lnc-SLC6A9-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC6A9-4:1	chr1	 44709917	 44710535	-	lnc-SLC6A9-4	lnc-SLC6A9-4:1	ENSG00000233602.1	ERI3-IT1	ERI3	NA	chr1:44699917-44719945	inner
CUST_27744_PI429285431	8.439454	P	8.0827675	P	1.28048158034659	0	lncRNA	29326-1_{1..341}	n324961|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079674|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079674|-0.9681160|-0.1251572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324961|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079674|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079674|-0.9681160|-0.1251572	chr20	 48219289	 48219629	+	NA	NA	NA	NA	LOC728671	NA	chr20:48211006-48231686	inter
CUST_21464_PI429285431	0.90277004	A	0.9223096	A	0.986547513545217	0	lncRNA	23083-1_{1..562}	lnc-IL3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL3-3:1	chr5	131303652	131304213	+	lnc-IL3-3	lnc-IL3-3:1	ENSG00000234758.1	AC034228.4	ACSL6	"hg19_refFlat_ACSL6:range=chr5:131289927-1313476135'pad=0,hg19_refFlat_ACSL6:range=chr5:131289927-1313476135'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ACSL6:range=chr5:131289927-1313299185'pad=0,hg19_refFlat_ACSL6:range=chr5:131289927-1313299185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ACSL6:range=chr5:131289927-1313472465'pad=0,hg19_refFlat_ACSL6:range=chr5:131289927-1313472465'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr5:131293652-131313913"	NA	inner
CUST_41878_PI429285431	1.3532193	A	1.113279	A	1.18094379191718	0	lncRNA	43550-1_{1..80}	ENST00000580643 ncrna:miRNA chromosome:GRCh37:10:121718025:121718104:1 gene:ENSG00000265370 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580643 ncrna:miRNA chromosome:GRCh37:10:121718025:121718104:1 gene:ENSG00000265370 gene_biotype:miRNA transcript_biotype:miRNA	chr10	121718025	121718104	+	ENSG00000265370	ENST00000580643	NA	NA	NA	NA	NA	inter
CUST_26590_PI429285431	0.91936046	A	0.92369694	A	0.996998694065195	0	lncRNA	28093-1_{1..592}	lnc-APBB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APBB2-1:1	chr4	 41258576	 41259167	-	lnc-APBB2-1	lnc-APBB2-1:1	ENSG00000251173.1	RP11-124A7.2	UCHL1	NA	chr4:41258898-41268744	inter
CUST_32757_PI429285431	0.9129106	A	0.9046533	A	1.00573993487275	0	lncRNA	34394-1_{1..648}	n339392|BC041825|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1824|NULL|1.8403600|-0.2549083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339392|BC041825|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1824|NULL|1.8403600|-0.2549083	chr3	 71617013	 71617660	+	NA	NA	NA	NA	FOXP1	NA	chr3:71607013-71630263	inner
CUST_31303_PI429285431	2.9142234	A	0.91113645	A	4.00856800601419	0	lncRNA	33088-1_{1..3000}	n337768|AL833463|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|150|NULL|-1.1406300|-0.3999243	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337768|AL833463|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|150|NULL|-1.1406300|-0.3999243	chr15	 55831081	 55834080	-	NA	NA	NA	NA	PYGO1	NA	chr15:55838221-55844829	inter
CUST_25137_PI429285431	1.7520288	A	1.6785175	A	1.05227464573641	0	lncRNA	26675-1_{1..280}	lnc-DYDC1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DYDC1-4:3	chr10	 83992236	 83992515	-	lnc-DYDC1-4	lnc-DYDC1-4:3	ENSG00000225738.2	NRG3-AS1	NRG3	NA	chr10:83982236-84002333	inner
CUST_31230_PI429285431	0.9231656	A	0.9106005	A	1.0087475013661	0	lncRNA	33020-2_{3001..3373}	n337678|BX641061|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|60|NULL|-0.4250080|-0.3446239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337678|BX641061|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|60|NULL|-0.4250080|-0.3446239	chr15	 29668805	 29669177	-	NA	NA	NA	NA	FAM189A1	NA	chr15:29655805-29679160	inner
LNCA_21_P0014469	0.92929834	A	0.9167363	A	1.00874536178428	0	lncRNA	ENST00000417609	XR_109959	XR_109959	NA	Hs.112970	LOC100507562	NA	ENST00000417609	THC2669124	NA	"PREDICTED: Homo sapiens hypothetical LOC100507562 (LOC100507562), miscRNA [XR_109959]"	chr2:21625981-21626040	hs|2p24.1	Agilent_HUMAN_G3V2	ENST00000417609	ENST00000417609	chr2	 21625981	 21626040	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13362_PI429285431	6.5953574	P	7.4799533	P	0.541639215081677	0	lncRNA	15000-1_{1..570}	lnc-CKAP2L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CKAP2L-1:2	chr2	113403007	113403576	-	lnc-CKAP2L-1	lnc-CKAP2L-1:2	XLOC_002275	linc-RGPD8-2	SLC20A1	NA	chr2:113403434-113413284	inter
CUST_4119_PI429285431	1.9654677	A	2.4148278	A	0.732367613849384	0	lncRNA	4079-1_{1..562}	"transcript_id ""ENST00000447864.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447864.1"" | genecode_v17"	chr11	131074894	131075455	+	ENSG00000227125.1	ENST00000447864.1	AP002856.6	AP002856.6-001	NA	NA	NA	inter
CUST_51238_PI429285431	4.065785	P	4.232192	P	0.89105908295341	0	lncRNA	54851-2_{3001..3235}	hg19_lincRNAsTranscripts_TCONS_l2_00008419 range=chr15:23101594-23106207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008419 range=chr15:23101594-23106207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 23104594	 23104828	+	NA	NA	NA	NA	NA	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-57.20"	NA	inter
CUST_15883_PI429285431	4.3147616	P	4.106706	P	1.15513030124308	0	lncRNA	17574-1_{1..693}	lnc-KRT8P11-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KRT8P11-1:2	chr9	102299113	102299805	+	lnc-KRT8P11-1	lnc-KRT8P11-1:2	XLOC_007488	linc-NR4A3	NA	NA	NA	inter
LNCA_21_P0013296	0.9267759	A	0.9131797	A	1.00946871499515	0	lncRNA	TCONS_l2_00026507	NA	NA	NA	NA	XLOC_l2_013783	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013783), lincRNA [TCONS_l2_00026507]"	chr7:35797812-35773369	hs|7p14.2	Agilent_HUMAN_G3V2	TCONS_l2_00026507	TCONS_l2_00026507	chr7	 35773369	 35797812	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36582_PI429285431	0.90307975	A	0.9063425	A	0.997740989450156	0	lncRNA	37776-1_{1..700}	n345078|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_627|NULL|-1.2914200|-0.2817301	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345078|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_627|NULL|-1.2914200|-0.2817301	chrX	 18903152	 18903851	-	NA	NA	NA	NA	PHKA2	NA	chrX:18910416-18913852	inter
CUST_6662_PI429285431	7.1156044	P	7.305011	P	0.876966355277506	0	lncRNA	6608-1_{1..439}	"transcript_id ""ENST00000439450.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439450.1"" | genecode_v17"	chr20	 22201192	 22201630	+	ENSG00000234862.1	ENST00000439450.1	RP5-1097P24.1	RP5-1097P24.1-001	NA	NA	NA	inter
CUST_13347_PI429285431	0.9120177	A	0.9013606	A	1.00741428955509	0	lncRNA	14984-1_{1..461}	lnc-TMPRSS15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMPRSS15-1:1	chr21	 19858810	 19859270	-	lnc-TMPRSS15-1	lnc-TMPRSS15-1:1	XLOC_014013	linc-TMPRSS15-26	NA	NA	NA	inter
CUST_43646_PI429285431	8.88573	P	8.480155	P	1.32461674395964	0	lncRNA	48403-1_{1..1210}	"gi|54792770|ref|NR_002190.1| Homo sapiens SUMO1 pseudogene 3 (SUMO1P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|54792770|ref|NR_002190.1| Homo sapiens SUMO1 pseudogene 3 (SUMO1P3), non-coding RNA"	Chr1	160287055	160288264	+	474338	NR_002190.1	NA	NA	NA	NA	NA	inter
CUST_28096_PI429285431	2.0771062	A	1.951812	A	1.09073013593155	0	lncRNA	29718-1_{1..892}	n325368|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324320|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324320|-1.0755300|-0.3569398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325368|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324320|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324320|-1.0755300|-0.3569398	chr2	 23424029	 23424920	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28114_PI429285431	0.9140581	A	0.91327065	A	1.00054596773349	0	lncRNA	29736-1_{1..308}	n325386|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323901|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323901|-1.1596600|-0.4622976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325386|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323901|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323901|-1.1596600|-0.4622976	chr2	 20514283	 20514590	+	NA	NA	NA	NA	PUM2	NA	chr2:20504283-20526189	inner
CUST_424_PI429285431	2.3124752	A	1.3918377	A	1.89295156862263	0	lncRNA	416-1_{1..373}	"transcript_id ""ENST00000412194.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412194.1"" | genecode_v17"	chr1	144325839	144326211	-	ENSG00000235398.3	ENST00000412194.1	LINC00623	LINC00623-016	LOC730256	NA	chr1:144339763-144340584	inter
CUST_212_PI429201921	3.4940655	P	3.7396793	P	0.843456867903258	0	lncRNA	168-1_{1..3000}	TC0Y000334.hg.1	TCONS_l2_00031057-XLOC_l2_015958 // Broad TUCP // linc-DAZ4-1 chrY:-:25687555-25693043 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:25687555-25693043	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031057-XLOC_l2_015958	linc-DAZ4-1	chrY	 25687555	 25693043	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12141_PI429285431	0.90020806	A	0.9767867	A	0.948303890584489	0	lncRNA	13739-1_{1..1097}	lnc-SYNDIG1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYNDIG1-3:1	chr20	 24046360	 24047456	+	lnc-SYNDIG1-3	lnc-SYNDIG1-3:1	XLOC_013496	linc-TMEM90B-2	NA	NA	NA	inter
CUST_37561_PI429285431	2.8802357	A	1.2346458	A	3.12875762095306	0	lncRNA	38663-2_{3001..5514}	n346036|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1586|NULL|-1.4286700|-0.3416271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n346036|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1586|NULL|-1.4286700|-0.3416271	chr6	138144786	138147299	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10"	NA	inter
CUST_9128_PI429285431	2.882813	A	2.9448187	A	0.957931433486628	0	lncRNA	10647-1_{1..2293}	lnc-BCAN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BCAN-1:1	chr1	156647045	156649337	+	lnc-BCAN-1	lnc-BCAN-1:1	ENSG00000250495	ENST00000515307	NES	"hg19_refFlat_NES:range=chr1:156639114-1566470565'pad=0,hg19_refFlat_NES:range=chr1:156639114-1566470565'pad=0 3'pad=0 strand=- repeatMasking=none,-110.50chr1:156638555-156647189"	NA	inner
CUST_15891_PI429285431	2.7864687	A	2.737741	A	1.03435233532005	0	lncRNA	17583-1_{1..234}	lnc-RYR3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RYR3-1:1	chr15	 33496383	 33496616	+	lnc-RYR3-1	lnc-RYR3-1:1	XLOC_011204	linc-RYR3	LOC100652815	NA	chr15:33486383-33486897	inter
CUST_15002_PI429285431	6.1597614	P	6.2598243	P	0.93299231315769	0	lncRNA	16664-1_{1..1226}	lnc-LSM3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LSM3-1:2	chr3	 14271205	 14272430	+	lnc-LSM3-1	lnc-LSM3-1:2	XLOC_002581	linc-SLC6A6	NA	NA	NA	inter
CUST_51532_PI429285431	0.9224214	A	0.91313726	A	1.00645602633873	0	lncRNA	55098-8_{21001..24000}	hg19_lincRNAsTranscripts_TCONS_l2_00011139 range=chr17:20432533-20460098 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011139 range=chr17:20432533-20460098 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 20453533	 20456532	-	NA	NA	NA	NA	CDRT15L2	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70chr17:20422533-20470098"	NA	inter
CUST_48346_PI429285431	3.214262	P	3.3942204	P	0.882728449330297	0	lncRNA	52202-1_{1..937}	hg19_lincRNAsTranscripts_TCONS_l2_00001273 range=chr1:65445347-65455927 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001273 range=chr1:65445347-65455927 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 65445347	 65446283	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00"	NA	inter
CUST_26602_PI429285431	0.899523	A	1.0084735	A	0.927262360989581	0	lncRNA	28105-1_{1..620}	lnc-PMP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PMP2-1:1	chr8	 82193568	 82194187	-	lnc-PMP2-1	lnc-PMP2-1:1	ENSG00000254027.1	RP11-363E6.3	FABP5	NA	chr8:82192718-82197012	inner
CUST_16642_PI429285431	0.91731894	A	0.9122046	A	1.00355128126126	0	lncRNA	18343-1_{1..1507}	lnc-SFSWAP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SFSWAP-2:1	chr12	131942548	131944054	+	lnc-SFSWAP-2	lnc-SFSWAP-2:1	XLOC_009958	linc-SFSWAP-2	NA	NA	NA	inter
CUST_23617_PI429285431	0.899257	A	0.90073746	A	0.998974349664298	0	lncRNA	25184-1_{1..591}	lnc-SPARCL1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPARCL1-1:4	chr4	 88581855	 88582445	-	lnc-SPARCL1-1	lnc-SPARCL1-1:4	ENSG00000249001.1	RP11-742B18.1	DMP1	NA	chr4:88571855-88585513	inner
CUST_10520_PI429285431	4.7014	P	4.970054	P	0.830093642184681	0	lncRNA	12048-1_{1..583}	lnc-GPR26-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR26-3:5	chr10	125321344	125321926	+	lnc-GPR26-3	lnc-GPR26-3:5	XLOC_008653	linc-GPR26-2	NA	NA	NA	inter
CUST_42638_PI429285431	0.9199413	A	0.9031502	A	1.01170669686286	0	lncRNA	45515-1_{1..108}	ENST00000516618 ncrna:snoRNA chromosome:GRCh37:11:46780316:46780423:-1 gene:ENSG00000252427 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516618 ncrna:snoRNA chromosome:GRCh37:11:46780316:46780423:-1 gene:ENSG00000252427 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 46780316	 46780423	-	ENSG00000252427	ENST00000516618	NA	NA	CKAP5	NA	chr11:46770316-46790423	inner
CUST_51971_PI429285431	0.91135573	A	0.8998245	A	1.00802486757976	0	lncRNA	55513-1_{1..1868}	hg19_lincRNAsTranscripts_TCONS_l2_00016265 range=chr20:42839835-42855166 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016265 range=chr20:42839835-42855166 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 42839835	 42841702	+	NA	NA	NA	NA	C20orf111	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-19.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60chr20:42829835-42839546"	NA	inter
CUST_41025_PI429285431	0.91213584	A	0.9131544	A	0.999294237175594	0	lncRNA	41684-2_{3001..3707}	n411650|NR_040113|lncRNA|Homosapiens||RefGeneNoncode|NR_040113||5.5985600|-0.3554412	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411650|NR_040113|lncRNA|Homosapiens||RefGeneNoncode|NR_040113||5.5985600|-0.3554412	chr18	 14182095	 14182801	+	NA	NA	NA	NA	LOC100652806	NA	chr18:14234721-14237049	inter
CUST_36192_PI429285431	1.389882	A	0.9124358	A	1.39227693182116	0	lncRNA	37454-2_{3001..3820}	n344743|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_292|NULL|-1.3177700|-0.3053820	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344743|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_292|NULL|-1.3177700|-0.3053820	chr3	106531685	106532504	-	NA	NA	NA	NA	NA	"hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40"	NA	inter
CUST_42101_PI429285431	0.896913	A	0.8928652	A	1.0028096608768	0	lncRNA	44054-1_{1..73}	ENST00000583739 ncrna:miRNA chromosome:GRCh37:6:35632494:35632566:-1 gene:ENSG00000265527 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583739 ncrna:miRNA chromosome:GRCh37:6:35632494:35632566:-1 gene:ENSG00000265527 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 35632494	 35632566	-	ENSG00000265527	ENST00000583739	NA	NA	FKBP5	NA	chr6:35622494-35642566	inner
CUST_45999_PI429285431	1.8704598	A	1.3828956	A	1.40207565670859	0	lncRNA	50286-1_{1..3000}	"gi|238550108|ref|NR_027716.1| Homo sapiens H2A histone family, member J (H2AFJ), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|238550108|ref|NR_027716.1| Homo sapiens H2A histone family, member J (H2AFJ), transcript variant 2, non-coding RNA"	Chr12	 14927270	 14930269	+	55766	NR_027716.1	NA	NA	NA	NA	NA	inter
CUST_13769_PI429285431	1.3279954	A	1.469348	A	0.906668708668516	0	lncRNA	15412-1_{1..2414}	lnc-ERC1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ERC1-1:3	chr12	  1615339	  1617752	+	lnc-ERC1-1	lnc-ERC1-1:3	XLOC_009615	linc-WNT5B	NA	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20"	NA	inter
CUST_334_PI429201921	8.15744	P	8.340728	P	0.880693546905981	0	lncRNA	221-1_{1..3000}	TC01005080.hg.1	 TCONS_l2_00000880-XLOC_l2_000656 // Broad TUCP // linc-WNT3A chr1:+:228159872-228161284 // chr1 // 100 // 100 // 0 // --- // 0///TCONS_l2_00000879-XLOC_l2_000656 // Broad TUCP // linc-WNT3A chr1:+:228154669-228162651 // chr1 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:228154669-228162651	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00000879-XLOC_l2_000656	linc-WNT3A	chr1	228154669	228162651	+	NA	NA	NA	NA	RNF11	NA	chr1:51701945-51710768	Unknown
CUST_8106_PI429285431	1.5566922	A	2.246054	A	0.620128113224574	0	lncRNA	9710-2_{3001..3624}	lnc-USP8-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP8-2:8	chr15	 50662561	 50663184	+	lnc-USP8-2	lnc-USP8-2:8	ENSG00000246338	XLOC_011248	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80"	NA	inter
CUST_27004_PI429285431	0.9045555	A	0.89803517	A	1.00452977691818	0	lncRNA	28532-1_{1..1126}	n324106|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000143045|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000143045|-1.1291100|-0.3533650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324106|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000143045|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000143045|-1.1291100|-0.3533650	chr9	 41275356	 41276481	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33019_PI429285431	1.6728283	A	1.8416808	A	0.889549935770804	0	lncRNA	34635-1_{1..1583}	n339702|AF070579|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2147|NULL|-0.6547060|-0.4018464	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339702|AF070579|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2147|NULL|-0.6547060|-0.4018464	chr3	179058109	179059691	+	NA	NA	NA	NA	ZNF639	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00chr3:179048109-179053320"	NA	inter
CUST_6149_PI429285431	1.7392008	A	1.388202	A	1.27544333079416	0	lncRNA	6075-1_{1..571}	"transcript_id ""ENST00000586741.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586741.1"" | genecode_v17"	chr18	 33026872	 33027442	-	ENSG00000267583.1	ENST00000586741.1	RP11-322E11.5	RP11-322E11.5-001	INO80C	NA	chr18:33048291-33057052	inter
LNCA_21_P0006927	0.9196384	A	0.90618813	A	1.00936661142143	0	lncRNA	TCONS_00018360	NA	NA	NA	NA	XLOC_008646	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008646), lincRNA [TCONS_00018360]"	chr10:122739023-122740503	hs|10q26.12	Agilent_HUMAN_G3V2	TCONS_00018360	TCONS_00018360	chr10	122739023	122740503	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48022_PI429285431	0.9094919	A	0.9051886	A	1.0029872732969	0	lncRNA	51905-1_{1..526}	"gi|410173630|ref|XR_172304.1| PREDICTED: Homo sapiens chromosome 20 open reading frame 61 (C20orf61), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|410173630|ref|XR_172304.1| PREDICTED: Homo sapiens chromosome 20 open reading frame 61 (C20orf61), misc_RNA"	NA	NA	NA	NA	NA	XR_172304.1	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00320499	3.3702245	P	4.0643673	P	0.618076449349621	0	lncRNA	TCONS_l2_00025239	NA	NA	NA	NA	XLOC_l2_012721	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012721), lincRNA [TCONS_l2_00025239]"	chr6:132228583-132228642	hs|6q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00025239	TCONS_l2_00025239	chr6	132228583	132228642	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25376_PI429285431	3.0126638	A	3.4876494	P	0.719473971269078	0	lncRNA	26907-1_{1..1094}	lnc-OR4N4-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR4N4-1:10	chr15	 22383302	 22384395	+	lnc-OR4N4-1	lnc-OR4N4-1:10	ENSG00000259176.1	RP11-69H14.6	OR4N4	NA	chr15:22382473-22383815	inner
CUST_24046_PI429285431	1.0786769	A	0.91489583	A	1.1202192072326	0	lncRNA	25598-1_{1..563}	lnc-RP11-43D2.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-43D2.2.1-2:1	chr5	124064524	124065086	+	lnc-RP11-43D2.2.1-2	lnc-RP11-43D2.2.1-2:1	ENSG00000250206.1	RP11-436H11.2	ZNF608	NA	chr5:124054524-124075086	inner
CUST_8599_PI429285431	0.9085138	A	0.8959699	A	1.00873267821269	0	lncRNA	10155-1_{1..3000}	lnc-BRD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-BRD1-2:1	chr22	 50117159	 50120158	-	lnc-BRD1-2	lnc-BRD1-2:1	ENSG00000226954	XLOC_014412	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90"	NA	inter
CUST_13593_PI429285431	7.306925	P	7.2817235	P	1.01762181255812	0	lncRNA	15232-1_{1..943}	lnc-TMEM116-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TMEM116-2:7	chr12	112279509	112280451	-	lnc-TMEM116-2	lnc-TMEM116-2:7	XLOC_010202	linc-BRAP-2	MAPKAPK5	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr12:112280279-112289752"	NA	inter
CUST_46007_PI429285431	4.61267	P	4.7343245	P	0.919132973249398	0	lncRNA	50291-1_{1..1374}	"gi|397139443|ref|XR_158866.1| PREDICTED: Homo sapiens uncharacterized LOC100996472 (LOC100996472), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139443|ref|XR_158866.1| PREDICTED: Homo sapiens uncharacterized LOC100996472 (LOC100996472), misc_RNA"	NA	NA	NA	NA	NA	XR_158866.1	NA	NA	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60"	NA	Unknown
CUST_3202_PI429285431	1.6030108	A	0.88673145	A	1.64293949417352	0	lncRNA	3180-2_{3001..3766}	"transcript_id ""ENST00000523871.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523871.1"" | genecode_v17"	chr8	 81450241	 81451006	-	ENSG00000254162.1	ENST00000523871.1	RP11-48B3.3	RP11-48B3.3-001	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-24.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40"	NA	inter
CUST_44919_PI429285431	8.968943	P	8.973234	P	0.997030124280203	0	lncRNA	49435-1_{1..1409}	"gi|296040436|ref|NR_015356.2| Homo sapiens NPSR1 antisense RNA 1 (NPSR1-AS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|296040436|ref|NR_015356.2| Homo sapiens NPSR1 antisense RNA 1 (NPSR1-AS1), transcript variant 3, non-coding RNA"	Chr7	 34758474	 34759882	-	404744	NR_015356.2	NA	NA	NA	NA	NA	inter
CUST_46559_PI429285431	5.496398	P	5.576114	P	0.946243900099432	0	lncRNA	50744-1_{1..911}	"gi|410170714|ref|XR_109229.3| PREDICTED: Homo sapiens uncharacterized LOC400464 (LOC400464), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170714|ref|XR_109229.3| PREDICTED: Homo sapiens uncharacterized LOC400464 (LOC400464), misc_RNA"	NA	NA	NA	NA	NA	XR_109229.3	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013039	0.93076164	A	0.9186032	A	1.00846320050024	0	lncRNA	TCONS_l2_00024447	NA	NA	NA	NA	XLOC_l2_012741	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012741), lincRNA [TCONS_l2_00024447]"	chr6:138704487-138704546	hs|6q23.3	Agilent_HUMAN_G3V2	TCONS_l2_00024447	TCONS_l2_00024447	chr6	138704487	138704546	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1079_PI429285431	8.256476	P	8.090955	P	1.12157103749374	0	lncRNA	1068-1_{1..553}	"transcript_id ""ENST00000446520.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446520.1"" | genecode_v17"	chr2	138859454	138860006	+	ENSG00000224231.1	ENST00000446520.1	AC069394.1	AC069394.1-001	NA	NA	NA	inter
LNCA_21_P0002558	3.990912	P	2.886569	A	2.15000944858607	0	lncRNA	TCONS_00004641	NA	NA	NA	NA	XLOC_002554	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002554), lincRNA [TCONS_00004641]"	chr2:242672623-242672564	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_00004641	TCONS_00004641	chr2	242672564	242672623	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16425_PI429285431	0.9121209	A	2.0795205	A	0.445223114606684	0	lncRNA	18124-1_{1..390}	lnc-ZNF674-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF674-1:3	chrX	 46186986	 46187375	-	lnc-ZNF674-1	lnc-ZNF674-1:3	XLOC_008151	linc-CXorf36-3	NA	NA	NA	inter
CUST_12714_PI429285431	0.91242546	A	0.91317064	A	0.99948361395718	0	lncRNA	14332-1_{1..507}	lnc-FNDC1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FNDC1-4:1	chr6	159817093	159817599	+	lnc-FNDC1-4	lnc-FNDC1-4:1	XLOC_005523	linc-WTAP-3	NA	NA	NA	inter
CUST_6592_PI429285431	2.5389323	A	2.763677	A	0.855746445582197	0	lncRNA	6540-1_{1..537}	"transcript_id ""ENST00000587937.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587937.1"" | genecode_v17"	chr19	 56207251	 56207787	+	ENSG00000267183.1	ENST00000587937.1	AC010525.6	AC010525.6-001	NLRP9	NA	chr19:56218943-56219196	inter
CUST_688_PI429285431	0.9428632	A	0.918656	A	1.01692071305483	0	lncRNA	681-1_{1..540}	"transcript_id ""ENST00000456028.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456028.1"" | genecode_v17"	chr2	  6766244	  6766783	-	ENSG00000236172.2	ENST00000456028.1	AC097517.2	AC097517.2-055	NA	NA	NA	inter
LNCA_21_P0007269	0.9697206	A	1.3620421	A	0.76190260867778	0	lncRNA	TCONS_00019452	NA	NA	NA	NA	XLOC_009261	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009261), lincRNA [TCONS_00019452]"	chr11:102552004-102552063	hs|11q22.2	Agilent_HUMAN_G3V2	TCONS_00019452	TCONS_00019452	chr11	102552004	102552063	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30745_PI429285431	4.782902	P	4.8444686	P	0.958223034759477	0	lncRNA	32530-1_{1..232}	n336383|Z11232|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326180|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326180|-1.0091500|-0.2293390	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336383|Z11232|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326180|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326180|-1.0091500|-0.2293390	chr7	 38305210	 38305441	-	NA	NA	NA	NA	TARP	NA	chr7:38295938-38313248	inner
CUST_10126_PI429285431	1.0743313	A	1.0319005	A	1.02984755804374	0	lncRNA	11651-1_{1..253}	lnc-ALDH7A1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALDH7A1-3:1	chr5	125470706	125470958	-	lnc-ALDH7A1-3	lnc-ALDH7A1-3:1	XLOC_004985	linc-ZNF608-2	NA	NA	NA	inter
CUST_46265_PI429285431	8.998537	P	8.613506	P	1.30588784713431	0	lncRNA	50504-1_{1..2612}	"gi|338968903|ref|NR_040103.1| Homo sapiens carbohydrate kinase domain containing (CARKD), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338968903|ref|NR_040103.1| Homo sapiens carbohydrate kinase domain containing (CARKD), transcript variant 5, non-coding RNA"	Chr13	111267807	111270418	+	55739	NR_040103.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004262	0.9836242	A	1.5275216	A	0.685915422739817	0	lncRNA	TCONS_00009990	NA	NA	NA	NA	XLOC_004416	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004416), lincRNA [TCONS_00009990]"	chr5:67976879-67976938	hs|5q13.1	Agilent_HUMAN_G3V2	TCONS_00009990	TCONS_00009990	chr5	 67976879	 67976938	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26116_PI429285431	7.0772896	P	7.5688906	P	0.711235381424386	0	lncRNA	27627-1_{1..561}	lnc-DOCK4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DOCK4-1:1	chr7	112049564	112050124	-	lnc-DOCK4-1	lnc-DOCK4-1:1	ENSG00000226851.1	AC004112.4	NA	NA	NA	inter
CUST_49376_PI429285431	0.91322494	A	0.9037749	A	1.00657176850922	0	lncRNA	53190-1_{1..1035}	hg19_lincRNAsTranscripts_TCONS_l2_00023524 range=chr5:121493063-121499013 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023524 range=chr5:121493063-121499013 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	121493063	121494097	+	NA	NA	NA	NA	LOC100505841	NA	chr5:121495871-121509013	inner
CUST_47387_PI429285431	0.9145785	A	1.3267292	A	0.751502235053226	0	lncRNA	51435-1_{1..728}	"gi|223556002|ref|NR_026839.1| Homo sapiens Down syndrome critical region gene 8 (DSCR8), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223556002|ref|NR_026839.1| Homo sapiens Down syndrome critical region gene 8 (DSCR8), transcript variant 3, non-coding RNA"	Chr21	 39493545	 39494272	+	84677	NR_026839.1	NA	NA	NA	NA	NA	inter
CUST_3151_PI429285431	1.3643913	A	0.8970282	A	1.38258013291867	0	lncRNA	3130-1_{1..562}	"transcript_id ""ENST00000522265.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522265.1"" | genecode_v17"	chr8	 64326191	 64326752	-	ENSG00000253205.1	ENST00000522265.1	CTD-3046C4.1	CTD-3046C4.1-003	NA	NA	NA	inter
CUST_35992_PI429285431	0.9255836	A	0.9295778	A	0.997235260482704	0	lncRNA	37330-3_{6001..9000}	n344605|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_153|NULL|-1.5217100|-0.2534201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344605|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_153|NULL|-1.5217100|-0.2534201	chr2	239444308	239447307	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00"	NA	inter
CUST_15385_PI429285431	0.9840831	A	0.92734534	A	1.04011118737404	0	lncRNA	17068-1_{1..509}	lnc-UQCRFS1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UQCRFS1-6:1	chr19	 28380013	 28380521	-	lnc-UQCRFS1-6	lnc-UQCRFS1-6:1	XLOC_013284	linc-ZNF681-6	NA	NA	NA	inter
CUST_48082_PI429285431	3.0069468	A	3.1466427	P	0.907710467864415	0	lncRNA	51958-1_{1..1314}	"gi|397138320|ref|XR_159444.1| PREDICTED: Homo sapiens uncharacterized LOC100996645 (LOC100996645), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397138320|ref|XR_159444.1| PREDICTED: Homo sapiens uncharacterized LOC100996645 (LOC100996645), misc_RNA"	NA	NA	NA	NA	NA	XR_159444.1	NA	NA	NA	NA	NA	Unknown
CUST_27665_PI429285431	1.7849257	A	2.1854281	A	0.757594414798516	0	lncRNA	29243-1_{1..897}	n324872|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171043|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171043|-0.2627430|-0.2790419	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324872|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171043|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171043|-0.2627430|-0.2790419	chr21	 22303347	 22304243	-	NA	NA	NA	NA	NCAM2	"hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30chr21:22370633-22402649"	NA	inner
CUST_51315_PI429285431	1.0321012	A	1.2418953	A	0.864660626006026	0	lncRNA	54920-1_{1..810}	hg19_lincRNAsTranscripts_TCONS_l2_00008609 range=chr15:42943214-42961485 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008609 range=chr15:42943214-42961485 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 42943214	 42944023	+	NA	NA	NA	NA	STARD9	NA	chr15:42933214-42971485	inner
CUST_26825_PI429285431	0.99585056	A	0.9200493	A	1.05394622579929	0	lncRNA	28338-1_{1..1773}	n323894|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060659|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060659|-1.1684100|-0.3631478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323894|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060659|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060659|-1.1684100|-0.3631478	chrX	 39049153	 39050925	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31374_PI429285431	1.0031248	A	0.96018624	A	1.03021007916755	0	lncRNA	33153-1_{1..2491}	n337841|AK091435|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|224|NULL|-0.8591940|-0.1248213	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337841|AK091435|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|224|NULL|-0.8591940|-0.1248213	chrX	118827530	118830020	+	NA	NA	NA	NA	6-Sep	NA	chrX:118817530-118827333	inter
CUST_15850_PI429285431	0.93329346	A	1.0315173	A	0.934182393442716	0	lncRNA	17544-1_{1..313}	lnc-CD109-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD109-1:1	chr6	 74365848	 74366160	+	lnc-CD109-1	lnc-CD109-1:1	XLOC_005347	linc-CD109-1	SLC17A5	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20chr6:74355848-74363737"	NA	inter
CUST_49722_PI429285431	0.95167047	A	0.93291026	A	1.01308850096562	0	lncRNA	53497-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_00040338_HOTTIP range=chr7:27240241-27247033 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00040338_HOTTIP range=chr7:27240241-27247033 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 27240241	 27243240	+	NA	NA	NA	NA	HOXA13	NA	chr7:27236499-27239725	inter
CUST_16563_PI429285431	0.93136483	A	0.92337763	A	1.00555165881909	0	lncRNA	18264-1_{1..540}	lnc-AC114546.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC114546.1-4:1	chr15	 35015735	 35016274	+	lnc-AC114546.1-4	lnc-AC114546.1-4:1	XLOC_011205	linc-C15orf41-5	NA	NA	NA	inter
CUST_7659_PI429285431	4.896002	P	4.8730793	P	1.0160157031324	0	lncRNA	9291-1_{1..415}	lnc-CTR9-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CTR9-3:7	chr11	 10928002	 10928416	+	lnc-CTR9-3	lnc-CTR9-3:7	ENSG00000247271	CTD-2003C8.1	NA	NA	NA	inter
CUST_44696_PI429285431	6.460955	P	6.6074367	P	0.90345102403014	0	lncRNA	49253-1_{1..1906}	"gi|311893295|ref|NR_037181.1| Homo sapiens uncharacterized LOC100507362 (LOC100507362), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|311893295|ref|NR_037181.1| Homo sapiens uncharacterized LOC100507362 (LOC100507362), transcript variant 3, non-coding RNA"	NT_167247.1	   800373	   802278	+	100507362	NR_037181.1	NA	NA	NA	NA	NA	Unknown
CUST_5889_PI429285431	4.816022	P	4.112556	P	1.6284122730904	0	lncRNA	5820-1_{1..839}	"transcript_id ""ENST00000509943.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509943.1"" | genecode_v17"	chr17	 48286333	 48287171	+	ENSG00000249406.1	ENST00000509943.1	RP11-893F2.5	RP11-893F2.5-001	COL1A1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50chr17:48276333-48279000"	NA	inter
CUST_30426_PI429285431	11.894925	P	11.948893	P	0.963283260089616	0	lncRNA	32206-1_{1..240}	n335561|CR407662|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267159|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267159|-0.8822160|-0.2330712	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335561|CR407662|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267159|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267159|-0.8822160|-0.2330712	chr14	 24686336	 24686575	-	NA	NA	NA	NA	NEDD8	NA	chr14:24686057-24697655	inner
CUST_3294_PI429285431	1.3496985	A	1.3917217	A	0.971291876057216	0	lncRNA	3272-1_{1..782}	"transcript_id ""ENST00000533516.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533516.1"" | genecode_v17"	chr8	125823860	125824641	-	ENSG00000255491.1	ENST00000533516.1	RP11-1082L8.4	RP11-1082L8.4-001	NA	NA	NA	inter
CUST_45402_PI429285431	1.6295824	A	1.3347784	A	1.22671830785053	0	lncRNA	49831-1_{1..2688}	"gi|397139341|ref|XR_158851.1| PREDICTED: Homo sapiens uncharacterized LOC100996569, transcript variant 2 (LOC100996569), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139341|ref|XR_158851.1| PREDICTED: Homo sapiens uncharacterized LOC100996569, transcript variant 2 (LOC100996569), misc_RNA"	NA	NA	NA	NA	NA	XR_158851.1	NA	NA	NA	NA	NA	Unknown
CUST_18533_PI429285431	1.3578337	A	0.9202069	A	1.35437457912666	0	lncRNA	20247-1_{1..3000}	lnc-CCNJ-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCNJ-1:2	chr10	 97920102	 97923101	+	lnc-CCNJ-1	lnc-CCNJ-1:2	ENSG00000177853	ZNF518A	ZNF518A	NA	chr10:97910102-97923517	inner
CUST_46076_PI429285431	11.1283655	P	11.689245	P	0.677888781177526	0	lncRNA	50347-1_{1..1567}	"gi|224450998|ref|NR_027032.1| Homo sapiens uncharacterized LOC100130776 (LOC100130776), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224450998|ref|NR_027032.1| Homo sapiens uncharacterized LOC100130776 (LOC100130776), non-coding RNA"	Chr12	 58120023	 58121589	+	100130776	NR_027032.1	NA	NA	NA	"hg19_refFlat_AGAP2:range=chr12:58120335-581320295'pad=0,hg19_refFlat_AGAP2:range=chr12:58120335-581320295'pad=0 3'pad=0 strand=- repeatMasking=none,-105.60;hg19_refFlat_AGAP2:range=chr12:58120335-581358545'pad=0,hg19_refFlat_AGAP2:range=chr12:58120335-581358545'pad=0 3'pad=0 strand=- repeatMasking=none,-105.60"	NA	inter
CUST_3584_PI429285431	2.6520827	A	2.9364777	A	0.82108586230043	0	lncRNA	3554-1_{1..918}	"transcript_id ""ENST00000438753.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438753.1"" | genecode_v17"	chr10	  2543975	  2544892	+	ENSG00000235281.1	ENST00000438753.1	RP11-526P5.2	RP11-526P5.2-002	NA	NA	NA	inter
CUST_26098_PI429285431	10.601326	P	11.680966	P	0.473146874385283	0	lncRNA	27611-1_{1..3000}	lnc-GINS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GINS1-1:1	chr20	 25654488	 25657487	+	lnc-GINS1-1	lnc-GINS1-1:1	ENSG00000213742.2	RP4-694B14.5	ZNF337	"hg19_refFlat_ZNF337:range=chr20:25655668-256670535'pad=0,hg19_refFlat_ZNF337:range=chr20:25655668-256670535'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ZSCAN23:range=chr6:28402242-284040435'pad=0,hg19_refFlat_ZSCAN23:range=chr6:28402242-284040435'pad=0 3'pad=0 strand=- repeatMasking=none,-61.30chr20:25650496-25668710"	NA	inner
CUST_21902_PI429285431	6.9866195	P	6.991849	P	0.996381748523847	0	lncRNA	23511-1_{1..317}	lnc-CES2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CES2-1:1	chr16	 66997082	 66997398	+	lnc-CES2-1	lnc-CES2-1:1	ENSG00000265408.1	RP11-361L15.4	CES3	NA	chr16:66995132-67007159	inner
CUST_11504_PI429285431	1.9290164	A	2.1278214	A	0.871271948524334	0	lncRNA	13073-1_{1..871}	lnc-LRFN5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-LRFN5-1:3	chr14	 41444546	 41445416	+	lnc-LRFN5-1	lnc-LRFN5-1:3	XLOC_010813	linc-LRFN5-1	NA	NA	NA	inter
CUST_9272_PI429285431	4.1498227	P	4.288852	P	0.9081299741297	0	lncRNA	10777-1_{1..882}	lnc-SOX2-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SOX2-1:12	chr3	181457357	181458238	+	lnc-SOX2-1	lnc-SOX2-1:12	ENSG00000242808	RP11-4B14.2	NA	NA	NA	inter
LNCA_21_P0014150	1.2424626	A	1.0752608	A	1.12287847607527	0	lncRNA	XR_108607	XR_108607	XR_108607	NA	Hs.660059	LOC100506740	uncharacterized LOC100506740	NA	THC2496927	NA	"PREDICTED: Homo sapiens hypothetical LOC100506740 (LOC100506740), miscRNA [XR_108607]"	chr6:74404084-74404025	hs|6q13	Agilent_HUMAN_G3V2	XR_108607	XR_108607	chr6	 74404025	 74404084	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7809_PI429285431	2.028247	A	2.0746727	A	0.968332418552861	0	lncRNA	9433-1_{1..1702}	lnc-GXYLT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GXYLT2-1:1	chr3	 73446525	 73448226	+	lnc-GXYLT2-1	lnc-GXYLT2-1:1	ENSG00000249953	ENST00000509224	PDZRN3	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40chr3:73436525-73457965"	NA	inner
CUST_4995_PI429285431	5.6542826	P	5.544614	P	1.07898035656295	0	lncRNA	4939-1_{1..574}	"transcript_id ""ENST00000556308.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556308.1"" | genecode_v17"	chr14	101129423	101129996	+	ENSG00000196273.3	ENST00000556308.1	LINC00523	LINC00523-005	NA	NA	NA	inter
CUST_31796_PI429285431	0.9071771	A	0.9099301	A	0.998093585333235	0	lncRNA	33534-1_{1..1922}	n338336|AK055008|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|730|NULL|-1.2389600|-0.4177164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338336|AK055008|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|730|NULL|-1.2389600|-0.4177164	chr14	 62268430	 62270351	+	NA	NA	NA	NA	SNAPC1	NA	chr14:62258430-62263146	inter
CUST_8438_PI429285431	4.2635355	P	4.6349573	P	0.77302029687043	0	lncRNA	10008-1_{1..1692}	lnc-HSPB6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSPB6-1:1	chr19	 36242862	 36244553	-	lnc-HSPB6-1	lnc-HSPB6-1:1	ENSG00000247203	ENST00000501632	C19orf55	"hg19_refFlat_LIN37:range=chr19:36239626-362453755'pad=0,hg19_refFlat_LIN37:range=chr19:36239626-362453755'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.00chr19:36249044-36254316"	NA	inner
CUST_39355_PI429285431	0.91332746	A	0.91445845	A	0.999216364672922	0	lncRNA	40319-1_{1..2055}	n386442|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lcg.2||2.2574600|-0.2326043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386442|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lcg.2||2.2574600|-0.2326043	chr7	 74698156	 74700210	+	NA	NA	NA	NA	LOC653375	NA	chr7:74697002-74714118	inter
CUST_22014_PI429285431	0.92605877	A	0.92497754	A	1.000749732435	0	lncRNA	23623-1_{1..612}	lnc-TRIO-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIO-2:1	chr5	 13897644	 13898255	+	lnc-TRIO-2	lnc-TRIO-2:1	ENSG00000251423.1	CTB-51A17.1	DNAH5	NA	chr5:13887644-13907880	inner
CUST_1657_PI429285431	4.776824	P	4.858976	P	0.944647509230884	0	lncRNA	1642-1_{1..704}	"transcript_id ""ENST00000595086.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595086.1"" | genecode_v17"	chr3	195435025	195435728	+	ENSG00000242086.3	ENST00000595086.1	AC069513.3	AC069513.3-022	MUC20	NA	chr3:195447753-195464540	inner
CUST_47736_PI429285431	2.116551	A	1.3129902	A	1.74540374769447	0	lncRNA	51687-2_{3001..5891}	"gi|385137098|ref|NR_047636.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 66, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137098|ref|NR_047636.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 66, non-coding RNA"	ChrY	 15363259	 15366149	-	7404	NR_047636.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0006252	0.93557966	A	0.9232398	A	1.00859002348952	0	lncRNA	TCONS_00016267	NA	NA	NA	NA	XLOC_007642	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007642), lincRNA [TCONS_00016267]"	chr9:7925602-7924817	hs|9p24.1	Agilent_HUMAN_G3V2	TCONS_00016267	TCONS_00016267	chr9	  7924817	  7925602	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19312_PI429285431	6.8565726	P	6.1550426	P	1.62622851857246	0	lncRNA	20978-1_{1..568}	lnc-PIGC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PIGC-1:1	chr1	172113794	172114361	-	lnc-PIGC-1	lnc-PIGC-1:1	ENSG00000230630.1	DNM3OS	DNM3	NA	chr1:172103794-172123934	inner
CUST_24530_PI429285431	6.092214	P	6.238331	P	0.903679436985388	0	lncRNA	26081-1_{1..3000}	lnc-MYH13-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYH13-2:1	chr17	 10063121	 10066120	-	lnc-MYH13-2	lnc-MYH13-2:1	ENSG00000263807.1	CTB-104H12.5	GAS7	"hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-24.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-54.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20chr17:10053121-10077385"	NA	inner
CUST_30564_PI429285431	3.2323534	P	3.850642	P	0.651443245456697	0	lncRNA	32345-1_{1..223}	n335766|X07060|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321236|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321236|-1.2586700|-0.1272365	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335766|X07060|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321236|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321236|-1.2586700|-0.1272365	chr6	  1206217	  1206439	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28465_PI429285431	1.1502081	A	0.9238866	A	1.16984833198533	0	lncRNA	30130-1_{1..264}	n325798|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044145|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044145|-0.9233320|-0.2792600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325798|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044145|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044145|-0.9233320|-0.2792600	chr13	 22641973	 22642236	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28621_PI429285431	0.90041447	A	1.2596619	A	0.779571130481545	0	lncRNA	30306-1_{1..2126}	n325990|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047736|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047736|-0.9116850|-0.1233786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325990|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047736|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047736|-0.9116850|-0.1233786	chr10	 43754456	 43756581	+	NA	NA	NA	NA	RASGEF1A	NA	chr10:43744456-43762367	inner
CUST_33339_PI429285431	7.1447444	P	6.778949	P	1.28859187211592	0	lncRNA	34921-1_{1..950}	n340058|AL831914|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2513|NULL|-1.2242600|-0.1812362	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340058|AL831914|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2513|NULL|-1.2242600|-0.1812362	chr10	 71785389	 71786338	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32644_PI429285431	4.725166	P	2.9397042	A	3.44728792315685	0	lncRNA	34299-3_{6001..6611}	n339265|D86965|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1697|NULL|6.3038200|-0.3014843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339265|D86965|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1697|NULL|6.3038200|-0.3014843	chr3	 17205898	 17206508	-	NA	NA	NA	NA	TBC1D5	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30chr3:17198654-17784240"	NA	inner
CUST_28356_PI429285431	1.1148885	A	0.89163697	A	1.16736161043432	0	lncRNA	30005-1_{1..307}	n325665|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045421|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045421|-0.2712500|-0.3802193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325665|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045421|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045421|-0.2712500|-0.3802193	chr13	 87992540	 87992846	+	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10"	NA	inter
CUST_6480_PI429285431	0.9535438	A	1.0776134	A	0.917595613638197	0	lncRNA	6421-1_{1..885}	"transcript_id ""ENST00000602796.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602796.1"" | genecode_v17"	chr19	 35890484	 35891368	+	ENSG00000205786.4	ENST00000602796.1	AC002511.1	AC002511.1-007	NA	NA	NA	inter
CUST_27035_PI429285431	0.91628265	A	0.9046772	A	1.00807672713985	0	lncRNA	28566-1_{1..237}	n324141|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051942|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051942|-1.1430000|-0.1595640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324141|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051942|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051942|-1.1430000|-0.1595640	chr9	 23661785	 23662021	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013155	0.9268583	A	1.4841692	A	0.679567658710246	0	lncRNA	ENST00000422736	NA	NA	NA	NA	XLOC_l2_013124	NA	ENST00000422736	THC2751607	NA	"BROAD Institute lincRNA (XLOC_l2_013124), lincRNA [TCONS_l2_00025477]"	chr6:134768643-134768584	hs|6q23.2	Agilent_HUMAN_G3V2	ENST00000422736	ENST00000422736	chr6	134768584	134768643	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21641_PI429285431	0.9174428	A	0.9141933	A	1.00225492028058	0	lncRNA	23253-1_{1..364}	lnc-SLC7A13-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC7A13-2:2	chr8	 87166252	 87166615	-	lnc-SLC7A13-2	lnc-SLC7A13-2:2	ENSG00000253675.1	CTD-3118D11.2	ATP6V0D2	NA	chr8:87156252-87166454	inner
CUST_41234_PI429285431	1.5371937	A	1.5843928	A	0.967813453997106	0	lncRNA	42151-1_{1..137}	ENST00000384853 ncrna:miRNA chromosome:GRCh37:19:13985689:13985825:1 gene:ENSG00000207585 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384853 ncrna:miRNA chromosome:GRCh37:19:13985689:13985825:1 gene:ENSG00000207585 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 13985689	 13985825	+	ENSG00000207585	ENST00000384853	NA	NA	C19orf57	NA	chr19:13993168-13995825	inter
CUST_3477_PI429285431	0.90702057	A	2.0405269	A	0.455806584253675	0	lncRNA	3448-1_{1..815}	"transcript_id ""ENST00000423380.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000423380.1"" | genecode_v17"	chr9	 93867239	 93868053	-	ENSG00000230537.1	ENST00000423380.1	RP11-305L7.1	RP11-305L7.1-001	NA	NA	NA	inter
CUST_47444_PI429285431	1.5482123	A	0.90770507	A	1.55887714087308	0	lncRNA	51476-2_{3001..4050}	"gi|374671825|ref|NR_046282.1| Homo sapiens zinc finger protein 74 (ZNF74), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374671825|ref|NR_046282.1| Homo sapiens zinc finger protein 74 (ZNF74), transcript variant 5, non-coding RNA"	Chr22	 20751405	 20752454	+	7625	NR_046282.1	NA	NA	NA	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30"	NA	inter
LNCA_21_P0005373	0.92342573	A	0.90866125	A	1.01028650372773	0	lncRNA	TCONS_00013414	NA	NA	NA	NA	XLOC_006051	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006051), lincRNA [TCONS_00013414]"	chr7:37570239-37570298	hs|7p14.1	Agilent_HUMAN_G3V2	TCONS_00013414	TCONS_00013414	chr7	 37570239	 37570298	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26117_PI429285431	4.3341985	P	4.2944226	P	1.0279541377347	0	lncRNA	27628-1_{1..431}	lnc-TMED5-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMED5-1:14	chr1	 93806015	 93806445	-	lnc-TMED5-1	lnc-TMED5-1:14	ENSG00000223745.1	RP4-717I23.3	DR1	"hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0,hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10chr1:93811478-93816029"	NA	inter
LNCA_19_P00317612	5.3297462	P	5.1334696	P	1.14573754289259	0	lncRNA	ENST00000446799	NA	NA	NA	NA	XLOC_002049	NA	ENST00000446799	NA	NA	"BROAD Institute lincRNA (XLOC_002049), lincRNA [TCONS_00004207]"	chr2:38102975-38102916	hs|2p22.2	Agilent_HUMAN_G3V2	ENST00000446799	ENST00000446799	chr2	 38102916	 38102975	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35897_PI429285431	1.5683744	A	2.6149957	A	0.484100570670731	0	lncRNA	37277-5_{12001..15000}	n344552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_100|NULL|-1.2931500|-0.3004446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n344552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_100|NULL|-1.2931500|-0.3004446	chr15	 25253369	 25256368	+	NA	NA	NA	NA	SNRPN	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr15:25231369-25375009"	NA	inter
CUST_231_PI429201921	4.123926	P	4.8494997	P	0.604756510198154	0	lncRNA	179-1_{1..3000}	TC16001436.hg.1	TCONS_l2_00010394-XLOC_l2_005139 // Broad TUCP // linc-TMC5-2 chr16:+:19316202-19322269 // chr16 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr16:+:19316202-19322269	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00010394-XLOC_l2_005139	linc-TMC5-2	chr16	 19316202	 19322269	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34565_PI429285431	0.9129348	A	0.898814	A	1.00983584981332	0	lncRNA	36025-1_{1..2216}	n341447|BC041346|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3917|NULL|-0.9876410|-0.2625137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341447|BC041346|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3917|NULL|-0.9876410|-0.2625137	chr13	113399762	113401977	-	NA	NA	NA	NA	ATP11A	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10chr13:113389762-113419007"	NA	inner
CUST_13735_PI429285431	0.9023624	A	0.9081281	A	0.996011496594141	0	lncRNA	15378-1_{1..1100}	lnc-EBF3-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EBF3-6:1	chr10	130834910	130836009	-	lnc-EBF3-6	lnc-EBF3-6:1	XLOC_008992	linc-MKI67-4	NA	NA	NA	inter
CUST_8789_PI429285431	12.207793	P	11.061235	P	2.2138508052542	0	lncRNA	10329-1_{1..981}	lnc-SYNCRIP-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SYNCRIP-2:4	chr6	 86387854	 86388834	-	lnc-SYNCRIP-2	lnc-SYNCRIP-2:4	ENSG00000203875	SNHG5	NA	NA	NA	inter
CUST_44798_PI429285431	7.8227243	P	8.203175	P	0.768197567132332	0	lncRNA	49332-3_{6001..6355}	"gi|373938457|ref|NR_028338.2| Homo sapiens TRAF3 interacting protein 2 (TRAF3IP2), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|373938457|ref|NR_028338.2| Homo sapiens TRAF3 interacting protein 2 (TRAF3IP2), transcript variant 1, non-coding RNA"	Chr6	111882581	111882935	-	10758	NR_028338.2	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.44;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30"	NA	inter
CUST_30432_PI429285431	14.453022	P	14.068955	P	1.30501555232768	0	lncRNA	32212-1_{1..394}	n335567|CR541874|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000268744|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000268744|2.1432800|-0.1786364	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335567|CR541874|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000268744|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000268744|2.1432800|-0.1786364	chr11	   308193	   308586	+	NA	NA	NA	NA	IFITM1	NA	chr11:313991-315272	inner
CUST_35899_PI429285431	2.0422757	A	2.561551	A	0.697722227616142	0	lncRNA	37277-7_{18001..21000}	n344552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_100|NULL|-1.2931500|-0.3004446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n344552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_100|NULL|-1.2931500|-0.3004446	chr15	 25259369	 25262368	+	NA	NA	NA	NA	SNRPN	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr15:25231369-25375009"	NA	inter
CUST_50212_PI429285431	2.1509516	A	1.3557725	A	1.73529278479529	0	lncRNA	53938-1_{1..639}	hg19_lincRNAsTranscripts_TCONS_l2_00029309 range=chr9:66514486-66522897 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029309 range=chr9:66514486-66522897 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 66514486	 66515124	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51217_PI429285431	5.4610553	P	5.8377547	P	0.770197635930726	0	lncRNA	54835-1_{1..351}	hg19_lincRNAsTranscripts_TCONS_l2_00008396 range=chr15:20488722-20490547 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008396 range=chr15:20488722-20490547 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 20488722	 20489072	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004838	6.3413982	P	6.41549	P	0.949939935408091	0	lncRNA	TCONS_00012426	NA	NA	NA	NA	XLOC_005173	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005173), lincRNA [TCONS_00012426]"	chr6:11951825-11951884	hs|6p24.1	Agilent_HUMAN_G3V2	TCONS_00012426	TCONS_00012426	chr6	 11951825	 11951884	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1823_PI429285431	0.89429075	A	0.8899761	A	1.00299516404997	0	lncRNA	1812-1_{1..799}	"transcript_id ""ENST00000522173.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522173.1"" | genecode_v17"	chr4	 97231883	 97232681	+	ENSG00000248510.2	ENST00000522173.1	RP11-145G20.1	RP11-145G20.1-002	NA	NA	NA	inter
CUST_2260_PI429285431	0.9299388	A	0.97035944	A	0.972371396193147	0	lncRNA	2252-1_{1..264}	"transcript_id ""ENST00000512284.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512284.1"" | genecode_v17"	chr5	 91889150	 91889413	-	ENSG00000249776.1	ENST00000512284.1	RP11-133F8.2	RP11-133F8.2-001	NA	NA	NA	inter
CUST_38446_PI429285431	6.6429563	P	6.6649594	P	0.98486432665989	0	lncRNA	39469-1_{1..2206}	n382693|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bke.1||1.9259700|-0.2060034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382693|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bke.1||1.9259700|-0.2060034	chr15	 84945011	 84947216	-	NA	NA	NA	NA	NA	"hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0,hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0,hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0,hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0,hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0,hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50"	NA	inter
CUST_14056_PI429285431	5.2835035	P	5.1254287	P	1.11579717201773	0	lncRNA	15702-1_{1..2636}	lnc-ZNF30-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF30-3:1	chr19	 35341596	 35344231	+	lnc-ZNF30-3	lnc-ZNF30-3:1	XLOC_013045	linc-ZNF30-3	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90"	NA	inter
CUST_25297_PI429285431	0.9110335	A	0.9123371	A	0.999096821446922	0	lncRNA	26828-1_{1..3000}	lnc-FAM174B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM174B-1:3	chr15	 93135809	 93138808	-	lnc-FAM174B-1	lnc-FAM174B-1:3	ENSG00000260337.1	RP11-386M24.6	NA	NA	NA	inter
CUST_27439_PI429285431	4.374589	P	4.6078978	P	0.850681626848271	0	lncRNA	29007-1_{1..1506}	n324612|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039673|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039673|-0.3992280|-0.2446938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324612|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039673|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039673|-0.3992280|-0.2446938	chr6	  3127976	  3129481	-	NA	NA	NA	NA	BPHL	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70chr6:3118926-3150989"	NA	inter
CUST_18757_PI429285431	4.1270027	P	3.9658003	P	1.11821871820864	0	lncRNA	20453-1_{1..2425}	lnc-MYBL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYBL2-1:1	chr20	 42454192	 42456616	+	lnc-MYBL2-1	lnc-MYBL2-1:1	ENSG00000225865	RP5-1030M6.2	NA	NA	NA	inter
CUST_43575_PI429285431	10.874338	P	10.816441	P	1.04094727747507	0	lncRNA	48346-1_{1..853}	"gi|213972564|ref|NR_024511.1| Homo sapiens long intergenic non-protein coding RNA 623 (LINC00623), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|213972564|ref|NR_024511.1| Homo sapiens long intergenic non-protein coding RNA 623 (LINC00623), non-coding RNA"	Chr1	144300512	144301364	-	728855	NR_024511.1	NA	NA	NA	NA	NA	inter
CUST_33538_PI429285431	0.89664817	A	0.89428085	A	1.0016422481985	0	lncRNA	35106-1_{1..1243}	n340284|BC038536|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2745|NULL|-0.9320620|-0.3149864	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340284|BC038536|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2745|NULL|-0.9320620|-0.3149864	chr4	176711457	176712699	+	NA	NA	NA	NA	GPM6A	NA	chr4:176701457-176743340	inner
CUST_1898_PI429285431	0.910741	A	1.0348132	A	0.917593959964774	0	lncRNA	1889-1_{1..564}	"transcript_id ""ENST00000511234.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511234.1"" | genecode_v17"	chr4	136713539	136714102	-	ENSG00000250865.1	ENST00000511234.1	RP11-780O17.1	RP11-780O17.1-001	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20"	NA	inter
CUST_21138_PI429285431	6.0795765	P	5.3150573	P	1.69880375181578	0	lncRNA	22763-1_{1..631}	lnc-AKIRIN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AKIRIN1-1:1	chr1	 39384846	 39385476	+	lnc-AKIRIN1-1	lnc-AKIRIN1-1:1	ENSG00000228436.1	RP5-864K19.4	RHBDL2	"hg19_refFlat_GJA9:range=chr1:39340223-393417705'pad=0,hg19_refFlat_GJA9:range=chr1:39340223-393417705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RHBDL2:range=chr1:39352176-393848845'pad=0,hg19_refFlat_RHBDL2:range=chr1:39352176-393848845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90chr1:39374846-39395068"	NA	inner
CUST_28763_PI429285431	5.4412174	P	5.652352	P	0.863857587791704	0	lncRNA	30471-1_{1..317}	n326169|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092799|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092799|-1.0383800|-0.3121509	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326169|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092799|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092799|-1.0383800|-0.3121509	chr1	233162030	233162346	-	NA	NA	NA	NA	PCNXL2	NA	chr1:233152030-233176197	inner
CUST_51454_PI429285431	1.1518553	A	0.91152096	A	1.18126638444912	0	lncRNA	55031-1_{1..486}	hg19_lincRNAsTranscripts_TCONS_l2_00009686 range=chr16:32772061-32773365 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009686 range=chr16:32772061-32773365 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 32772061	 32772546	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46506_PI429285431	9.370558	P	10.129536	P	0.590914784398647	0	lncRNA	50699-2_{3001..3276}	"gi|296010975|ref|NR_033660.1| Homo sapiens secretory carrier membrane protein 5 (SCAMP5), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|296010975|ref|NR_033660.1| Homo sapiens secretory carrier membrane protein 5 (SCAMP5), transcript variant 4, non-coding RNA"	Chr15	 75290876	 75291151	+	192683	NR_033660.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0006200	1.9365009	A	1.1055039	A	1.77891428792368	0	lncRNA	TCONS_00016116	NA	NA	NA	NA	XLOC_007504	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007504), lincRNA [TCONS_00016116]"	chr9:109994176-109994235	hs|9q31.2	Agilent_HUMAN_G3V2	TCONS_00016116	TCONS_00016116	chr9	109994176	109994235	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33628_PI429285431	2.819404	A	2.480754	A	1.2645727178825	0	lncRNA	35193-1_{1..305}	n340390|U52838|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2851|NULL|-0.9858630|-0.2023951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340390|U52838|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2851|NULL|-0.9858630|-0.2023951	chr5	 10705979	 10706283	+	NA	NA	NA	NA	DAP	NA	chr5:10695979-10716280	inner
CUST_3096_PI429285431	0.8961397	A	1.1003716	A	0.86800069323402	0	lncRNA	3075-1_{1..559}	"transcript_id ""ENST00000523038.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523038.1"" | genecode_v17"	chr8	 49510018	 49510576	-	ENSG00000253702.1	ENST00000523038.1	RP11-567J20.1	RP11-567J20.1-001	NA	NA	NA	inter
CUST_44218_PI429285431	10.925446	P	10.512649	P	1.3312642793543	0	lncRNA	48869-1_{1..1717}	"gi|258613923|ref|NR_028444.1| Homo sapiens protein disulfide isomerase family A, member 5 (PDIA5), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|258613923|ref|NR_028444.1| Homo sapiens protein disulfide isomerase family A, member 5 (PDIA5), transcript variant 2, non-coding RNA"	Chr3	122785856	122787572	+	10954	NR_028444.1	NA	NA	NA	NA	NA	inter
CUST_17357_PI429285431	3.2645712	P	3.1306634	A	1.09726181134402	0	lncRNA	19077-1_{1..1379}	lnc-TBPL2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBPL2-1:5	chr14	 56046654	 56048032	-	lnc-TBPL2-1	lnc-TBPL2-1:5	XLOC_011036	linc-TBPL2-3	KTN1	NA	chr14:56046925-56056810	inter
CUST_22089_PI429285431	1.7944422	A	0.92500055	A	1.82695569754658	0	lncRNA	23694-1_{1..664}	lnc-SLC23A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC23A1-1:1	chr5	138704771	138705434	-	lnc-SLC23A1-1	lnc-SLC23A1-1:1	ENSG00000249758.1	CTB-43P18.1	PAIP2	NA	chr5:138694771-138705409	inner
CUST_19834_PI429285431	0.91268885	A	1.0826993	A	0.888836242957444	0	lncRNA	21491-1_{1..484}	lnc-TMCO1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TMCO1-2:1	chr1	166134027	166134510	-	lnc-TMCO1-2	lnc-TMCO1-2:1	ENSG00000230898.1	RP11-9L18.3	FAM78B	"hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr1:166124027-166135958"	NA	inner
CUST_12057_PI429285431	1.0304763	A	0.9025813	A	1.09269820913517	0	lncRNA	13642-1_{1..230}	lnc-MCTP2-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MCTP2-9:1	chr15	 95622059	 95622288	+	lnc-MCTP2-9	lnc-MCTP2-9:1	XLOC_011367	linc-NR2F2-4	NA	NA	NA	inter
CUST_13597_PI429285431	0.9058893	A	0.9072151	A	0.999081447595791	0	lncRNA	15236-1_{1..1527}	lnc-NUB1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUB1-1:5	chr7	151109805	151111331	+	lnc-NUB1-1	lnc-NUB1-1:5	XLOC_006294	linc-GALNTL5-3	WDR86	NA	chr7:151099805-151107124	inter
CUST_19469_PI429285431	5.050659	P	5.134486	P	0.943551389569216	0	lncRNA	21127-1_{1..407}	lnc-RBM48-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBM48-1:2	chr7	 92546151	 92546557	+	lnc-RBM48-1	lnc-RBM48-1:2	ENSG00000237819.1	AC002454.1	NA	NA	NA	inter
CUST_14166_PI429285431	9.313626	P	9.164144	P	1.10917115239579	0	lncRNA	15817-1_{1..741}	lnc-USP38-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP38-1:1	chr4	143778385	143779125	+	lnc-USP38-1	lnc-USP38-1:1	XLOC_003714	linc-USP38	NA	NA	NA	inter
CUST_20925_PI429285431	0.8946799	A	0.89154804	A	1.00217319790786	0	lncRNA	22556-1_{1..867}	lnc-SAP30-5:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SAP30-5:14	chr4	174462626	174463492	+	lnc-SAP30-5	lnc-SAP30-5:14	ENSG00000237125.3	RP11-471J12.1	NA	NA	NA	inter
CUST_20206_PI429285431	0.9215325	A	0.9170836	A	1.0030885021167	0	lncRNA	21850-1_{1..1284}	lnc-FGF7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FGF7-1:1	chr15	 50175415	 50176698	+	lnc-FGF7-1	lnc-FGF7-1:1	ENSG00000259188.1	CTD-2647E9.3	ATP8B4	NA	chr15:50165415-50185720	inner
CUST_41629_PI429285431	0.9033473	A	0.8983215	A	1.00348969395318	0	lncRNA	43017-1_{1..68}	ENST00000385017 ncrna:miRNA chromosome:GRCh37:1:100746797:100746864:1 gene:ENSG00000207750 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385017 ncrna:miRNA chromosome:GRCh37:1:100746797:100746864:1 gene:ENSG00000207750 gene_biotype:miRNA transcript_biotype:miRNA	chr1	100746797	100746864	+	ENSG00000207750	ENST00000385017	NA	NA	RTCD1	NA	chr1:100736797-100756864	inner
CUST_30238_PI429285431	7.3277345	P	7.1898394	P	1.10029860249258	0	lncRNA	32013-1_{1..302}	n335107|AL357617|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250418|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250418|-1.1948700|-0.2453699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335107|AL357617|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250418|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250418|-1.1948700|-0.2453699	chr10	 81914851	 81915152	-	NA	NA	NA	NA	ANXA11	NA	chr10:81914880-81925153	inner
CUST_49441_PI429285431	5.3156176	P	5.280632	P	1.02454659665494	0	lncRNA	53242-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00022682 range=chr5:180255984-180262712 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022682 range=chr5:180255984-180262712 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	180255984	180258983	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22891_PI429285431	2.9526935	P	3.6010814	P	0.637992823078306	0	lncRNA	24468-1_{1..806}	lnc-SEC14L1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC14L1-1:8	chr17	 75095100	 75095905	+	lnc-SEC14L1-1	lnc-SEC14L1-1:8	ENSG00000234912.3	LINC00338	SEC14L1	NA	chr17:75085100-75105278	inner
CUST_16243_PI429285431	6.24183	P	6.5412865	P	0.812558450185917	0	lncRNA	17949-2_{3001..3187}	lnc-AC099552.4.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC099552.4.1-2:2	chr7	155061311	155061497	-	lnc-AC099552.4.1-2	lnc-AC099552.4.1-2:2	XLOC_006663	linc-PAXIP1-6	NA	NA	NA	inter
CUST_10618_PI429285431	5.1518073	P	5.1647987	P	0.991035470874076	0	lncRNA	12149-1_{1..660}	lnc-DCC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-DCC-1:1	chr18	 51103789	 51104448	+	lnc-DCC-1	lnc-DCC-1:1	XLOC_012678	linc-POLI-3	NA	NA	NA	inter
CUST_10094_PI429285431	9.266575	P	9.28871	P	0.984774288458541	0	lncRNA	11620-1_{1..760}	lnc-GRXCR1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRXCR1-4:2	chr4	 43347395	 43348154	+	lnc-GRXCR1-4	lnc-GRXCR1-4:2	XLOC_003526	linc-GUF1-3	NA	NA	NA	inter
CUST_50584_PI429285431	0.909488	A	0.9084186	A	1.00074152638975	0	lncRNA	54276-2_{3001..5130}	hg19_lincRNAsTranscripts_TCONS_l2_00002975 range=chr10:37592575-37636288 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002975 range=chr10:37592575-37636288 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 37595575	 37597704	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35856_PI429285431	2.9050758	A	3.0296364	P	0.917283376626912	0	lncRNA	37252-1_{1..3000}	n344523|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_71|NULL|-1.2887000|-0.2896918	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344523|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_71|NULL|-1.2887000|-0.2896918	chr6	 14230100	 14233099	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40670_PI429285431	5.6670675	P	5.5889597	P	1.05563259289494	0	lncRNA	41404-1_{1..1056}	n410225|NR_037170_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037170_2||-1.1758500|-0.2933468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410225|NR_037170_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037170_2||-1.1758500|-0.2933468	chr6	  3381592	  3382647	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3371592-3393155	inner
CUST_10342_PI429285431	0.9161945	A	0.9071096	A	1.00631704169746	0	lncRNA	11871-1_{1..262}	lnc-TMEM64-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM64-3:1	chr8	 91516828	 91517089	-	lnc-TMEM64-3	lnc-TMEM64-3:1	XLOC_007148	linc-CALB1-1	NA	NA	NA	inter
LNCA_21_P0011891	0.96036553	A	0.92321527	A	1.0260850088809	0	lncRNA	TCONS_l2_00014337	NA	NA	NA	NA	XLOC_l2_007834	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007834), lincRNA [TCONS_l2_00014337]"	chr2:242824767-242829934	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_l2_00014337	TCONS_l2_00014337	chr2	242824767	242829934	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4101_PI429285431	1.8211702	A	2.0450084	A	0.856284312486547	0	lncRNA	4062-1_{1..562}	"transcript_id ""ENST00000534423.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534423.1"" | genecode_v17"	chr11	119879313	119879874	-	ENSG00000255216.1	ENST00000534423.1	RP11-831A10.1	RP11-831A10.1-001	NA	NA	NA	inter
CUST_16324_PI429285431	5.7645917	P	4.6844845	P	2.11419317120861	0	lncRNA	18025-6_{15001..16923}	lnc-NAP1L2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NAP1L2-1:7	chrX	 73076217	 73078139	-	lnc-NAP1L2-1	lnc-NAP1L2-1:7	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70"	NA	inter
CUST_32055_PI429285431	0.91377175	A	0.9107602	A	1.0020896276267	0	lncRNA	33770-1_{1..621}	n338619|BC012528|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1025|NULL|-1.0904900|-0.2673427	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338619|BC012528|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1025|NULL|-1.0904900|-0.2673427	chr1	247196990	247197610	-	NA	NA	NA	NA	ZNF670	NA	chr1:247197940-247207582	inter
CUST_22336_PI429285431	0.91416824	A	0.9088422	A	1.00369855243673	0	lncRNA	23931-1_{1..371}	lnc-FLRT3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FLRT3-2:1	chr20	 14915884	 14916254	-	lnc-FLRT3-2	lnc-FLRT3-2:1	ENSG00000237832.1	RP5-974N19.1	MACROD2	NA	chr20:14905884-14926009	inner
CUST_17619_PI429285431	1.3015578	A	1.5144219	A	0.862822617485177	0	lncRNA	19343-1_{1..493}	lnc-MME-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MME-1:2	chr3	154960690	154961182	+	lnc-MME-1	lnc-MME-1:2	XLOC_002886	linc-GMPS-3	NA	NA	NA	inter
CUST_751_PI429285431	0.91262746	A	0.90658176	A	1.00419935258347	0	lncRNA	742-1_{1..574}	"transcript_id ""ENST00000590207.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590207.1"" | genecode_v17"	chr2	 11268665	 11269238	-	ENSG00000145063.10	ENST00000590207.1	AC062028.1	AC062028.1-004	C2orf50	NA	chr2:11258665-11282234	inter
CUST_2153_PI429285431	4.5450897	P	4.3428454	P	1.15048669550629	0	lncRNA	2144-1_{1..382}	"transcript_id ""ENST00000514113.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514113.1"" | genecode_v17"	chr5	 50225318	 50225699	-	ENSG00000251601.1	ENST00000514113.1	RP11-317O24.2	RP11-317O24.2-001	NA	NA	NA	inter
CUST_24693_PI429285431	2.7678905	A	3.9056022	P	0.454479869831585	0	lncRNA	26240-1_{1..689}	lnc-NSUN6-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NSUN6-2:3	chr10	 18948122	 18948810	-	lnc-NSUN6-2	lnc-NSUN6-2:3	ENSG00000152487.5	RP11-139J15.2	NSUN6	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10chr10:18938122-18940550"	NA	inter
CUST_24658_PI429285431	4.634157	P	5.2675166	P	0.644673416759399	0	lncRNA	26207-1_{1..513}	lnc-AC040934.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC040934.1-1:1	chr17	 45500728	 45501240	-	lnc-AC040934.1-1	lnc-AC040934.1-1:1	ENSG00000253347.1	CTD-2026D20.2	C17orf57	NA	chr17:45490728-45510892	inner
CUST_20761_PI429285431	7.7215466	P	7.6832485	P	1.0269017095986	0	lncRNA	22394-1_{1..752}	lnc-ZBTB32-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZBTB32-2:1	chr19	 36205425	 36206176	+	lnc-ZBTB32-2	lnc-ZBTB32-2:1	ENSG00000239352.1	AD000671.1	MLL4	NA	chr19:36208921-36215962	inner
LNCA_21_P0004281	3.1904476	P	1.7212477	A	2.76868303458372	0	lncRNA	TCONS_00010050	NA	NA	NA	NA	XLOC_004495	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004495), lincRNA [TCONS_00010050]"	chr5:102057934-102057993	hs|5q21.1	Agilent_HUMAN_G3V2	TCONS_00010050	TCONS_00010050	chr5	102057934	102057993	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1748_PI429285431	4.5343847	P	4.509676	P	1.0172742696779	0	lncRNA	1734-1_{1..608}	"transcript_id ""ENST00000412595.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412595.3"" | genecode_v17"	chr4	 39549456	 39550063	+	ENSG00000238206.3	ENST00000412595.3	RP11-472B18.2	RP11-472B18.2-001	C4orf34	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-62.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90chr4:39552550-39561432"	NA	inter
CUST_26589_PI429285431	0.9264116	A	0.9194112	A	1.00486409903123	0	lncRNA	28092-1_{1..565}	lnc-ERAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ERAP1-1:1	chr5	 96078107	 96078671	-	lnc-ERAP1-1	lnc-ERAP1-1:1	ENSG00000249180.1	CTC-506B8.1	CAST	"hg19_refFlat_CAST:range=chr5:96058382-961073835'pad=0,hg19_refFlat_CAST:range=chr5:96058382-961073835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CAST:range=chr5:95998127-961073835'pad=0,hg19_refFlat_CAST:range=chr5:95998127-961073835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10chr5:96068107-96088402"	NA	inner
CUST_13991_PI429285431	0.90462315	A	0.90682846	A	0.998472563311888	0	lncRNA	15636-1_{1..908}	lnc-OR10H5-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR10H5-2:3	chr19	 15939974	 15940881	+	lnc-OR10H5-2	lnc-OR10H5-2:3	XLOC_012981	linc-OR10H4	NA	NA	NA	inter
CUST_11287_PI429285431	5.461749	P	5.6263475	P	0.892176776415284	0	lncRNA	12847-1_{1..1897}	lnc-C9orf102-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf102-3:1	chr9	 98537058	 98538954	+	lnc-C9orf102-3	lnc-C9orf102-3:1	XLOC_007475	linc-C9orf102-2	LOC100506667	NA	chr9:98532606-98534956	inter
CUST_13630_PI429285431	4.0293555	P	4.5682607	P	0.688293027287004	0	lncRNA	15269-1_{1..387}	lnc-RHOB-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RHOB-6:3	chr2	 19688129	 19688515	+	lnc-RHOB-6	lnc-RHOB-6:3	XLOC_001377	linc-RHOB-5	NA	NA	NA	inter
CUST_23698_PI429285431	1.771657	A	2.4255772	A	0.635550998005116	0	lncRNA	25263-1_{1..539}	lnc-COPZ2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COPZ2-1:1	chr17	 46124987	 46125525	-	lnc-COPZ2-1	lnc-COPZ2-1:1	ENSG00000263412.1	RP5-890E16.2	NFE2L1	NA	chr17:46125686-46135435	inter
CUST_17993_PI429285431	5.4490514	P	5.292318	P	1.11476019976852	0	lncRNA	19727-1_{1..220}	lnc-GEMIN8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GEMIN8-1:1	chrX	 14011122	 14011341	-	lnc-GEMIN8-1	lnc-GEMIN8-1:1	XLOC_008117	linc-GPM6B	NA	NA	NA	inter
CUST_38141_PI429285431	5.9630876	P	6.098891	P	0.91016284601126	0	lncRNA	39212-1_{1..2796}	n381322|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gyh.2||4.3959300|-0.2416214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n381322|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gyh.2||4.3959300|-0.2416214	chr1	202789393	202792188	+	NA	NA	NA	NA	NA	"hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50"	NA	inter
CUST_35300_PI429285431	1.8438227	A	1.6263552	A	1.1626908121437	0	lncRNA	36703-2_{3001..5994}	n342321|BC055421|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4813|NULL|0.0030393|-0.2218815	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342321|BC055421|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4813|NULL|0.0030393|-0.2218815	chr14	 52234993	 52237986	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50"	NA	inter
CUST_10693_PI429285431	1.1237603	A	1.7672011	A	0.640184299331792	0	lncRNA	12227-1_{1..272}	lnc-OGFRL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OGFRL1-3:1	chr6	 72188949	 72189220	+	lnc-OGFRL1-3	lnc-OGFRL1-3:1	XLOC_005344	linc-RIMS1-1	NA	NA	NA	inter
CUST_48228_PI429285431	1.8141721	A	2.2998981	A	0.71413760764028	0	lncRNA	52091-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00000561 range=chr1:143392419-143405365 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000561 range=chr1:143392419-143405365 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	143392419	143395418	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22982_PI429285431	4.172487	P	5.196274	P	0.491823644667854	0	lncRNA	24556-1_{1..777}	lnc-KIAA0513-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0513-2:1	chr16	 85218725	 85219501	+	lnc-KIAA0513-2	lnc-KIAA0513-2:1	ENSG00000262601.1	CTC-786C10.1	NA	NA	NA	inter
CUST_5211_PI429285431	1.5593841	A	1.6805627	A	0.919436216500629	0	lncRNA	5151-1_{1..741}	"transcript_id ""ENST00000558071.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558071.1"" | genecode_v17"	chr15	 67278699	 67279439	-	ENSG00000259347.1	ENST00000558071.1	RP11-798K3.2	RP11-798K3.2-003	SMAD3	NA	chr15:67358195-67361591	inter
CUST_40297_PI429285431	1.1376829	A	1.0977318	A	1.02807897943425	0	lncRNA	41101-1_{1..2568}	n408283|NR_028484|lncRNA|Homosapiens||RefGeneNoncode|NR_028484||5.0562000|-0.1384789	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408283|NR_028484|lncRNA|Homosapiens||RefGeneNoncode|NR_028484||5.0562000|-0.1384789	chr22	 24825177	 24827744	-	NA	NA	NA	NA	UPB1	NA	chr22:24891251-24900783	inter
CUST_9949_PI429285431	0.9217866	A	0.9214748	A	1.00021614664722	0	lncRNA	11472-1_{1..846}	lnc-PABPC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PABPC3-1:1	chr13	 25692963	 25693808	+	lnc-PABPC3-1	lnc-PABPC3-1:1	XLOC_010319	linc-NUPL1-2	C13orf41	NA	chr13:25691059-25703540	inter
CUST_36891_PI429285431	2.305259	A	2.881527	A	0.670696509974364	0	lncRNA	38050-1_{1..609}	n345363|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_912|NULL|-1.3098000|-0.2656261	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345363|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_912|NULL|-1.3098000|-0.2656261	chr18	 53695460	 53696068	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11640_PI429285431	0.9244982	A	0.9130808	A	1.00794533660415	0	lncRNA	13217-1_{1..289}	lnc-SCEL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCEL-2:1	chr13	 78039829	 78040117	+	lnc-SCEL-2	lnc-SCEL-2:1	XLOC_010439	linc-SCEL-1	NA	NA	NA	inter
CUST_29522_PI429285431	8.163651	P	8.256954	P	0.937374205080839	0	lncRNA	31280-1_{1..477}	n332978|AF107836|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000069565|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000069565|1.6036400|-0.2890981	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332978|AF107836|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000069565|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000069565|1.6036400|-0.2890981	chr11	   248764	   249240	+	NA	NA	NA	NA	PSMD13	NA	chr11:238764-252984	inner
LNCA_19_P00322184	6.9435425	P	7.8636365	P	0.528474585955994	0	lncRNA	ENST00000436710	XR_108951	XR_108951	NA	NA	LOC100506119	NA	ENST00000436710	THC2610745	NA	"PREDICTED: Homo sapiens hypothetical LOC100506119, transcript variant 1 (LOC100506119), miscRNA [XR_108951]"	chr9:132104136-132104195	hs|9q34.11	Agilent_HUMAN_G3V2	ENST00000436710	ENST00000436710	chr9	132104136	132104195	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30219_PI429285431	4.321658	P	3.9381566	P	1.30450402902771	0	lncRNA	31994-1_{1..220}	n335069|AJ608789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249223|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249223|-1.0369300|-0.0685411	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335069|AJ608789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249223|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249223|-1.0369300|-0.0685411	chr6	 41658917	 41659136	-	NA	NA	NA	NA	TFEB	NA	chr6:41651716-41703997	inner
CUST_15339_PI429285431	0.9212086	A	0.9176583	A	1.00246391088675	0	lncRNA	17017-2_{3001..4712}	lnc-SULF2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SULF2-2:2	chr20	 46531127	 46532838	-	lnc-SULF2-2	lnc-SULF2-2:2	XLOC_013771	linc-SULF2-3	NA	NA	NA	inter
CUST_1429_PI429285431	3.250979	A	3.1603677	A	1.06482127387632	0	lncRNA	1418-1_{1..714}	"transcript_id ""ENST00000600240.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600240.1"" | genecode_v17"	chr3	107575968	107576681	-	ENSG00000241469.2	ENST00000600240.1	LINC00635	LINC00635-011	NA	NA	NA	inter
CUST_19154_PI429285431	2.3145666	A	1.637368	A	1.59903176671685	0	lncRNA	20828-1_{1..506}	lnc-AE000662.92.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,"	>lnc-AE000662.92.1-1:1	NA	NA	      505	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008754	4.954364	P	5.0626516	P	0.927688524137462	0	lncRNA	TCONS_00023724	NA	NA	NA	NA	XLOC_011519	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011519), lincRNA [TCONS_00023724]"	chr15:70265802-70265743	hs|15q23	Agilent_HUMAN_G3V2	TCONS_00023724	TCONS_00023724	chr15	 70265743	 70265802	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17214_PI429285431	5.8109875	P	6.3506804	P	0.68791732735088	0	lncRNA	18928-1_{1..330}	lnc-ADD3-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADD3-3:3	chr10	110600221	110600550	+	lnc-ADD3-3	lnc-ADD3-3:3	XLOC_008608	linc-ADD3-3	NA	NA	NA	inter
LNCA_21_P0001440	0.9344101	A	0.92268234	A	1.00816219432985	0	lncRNA	TCONS_00001330	NA	NA	NA	NA	XLOC_000619	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000619), lincRNA [TCONS_00001330]"	chr1:233067099-233067158	hs|1q42.2	Agilent_HUMAN_G3V2	TCONS_00001330	TCONS_00001330	chr1	233067099	233067158	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6242_PI429285431	0.9195149	A	0.9070704	A	1.00866318010583	0	lncRNA	6167-1_{1..2149}	"transcript_id ""ENST00000580659.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580659.1"" | genecode_v17"	chr18	 65475742	 65477890	-	ENSG00000265555.1	ENST00000580659.1	RP11-638L3.3	RP11-638L3.3-001	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70"	NA	inter
CUST_31438_PI429285431	1.1079527	A	2.6924398	A	0.333443192322688	0	lncRNA	33207-1_{1..1846}	n337906|AK128017|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|289|NULL|-0.0159731|-0.1993571	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337906|AK128017|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|289|NULL|-0.0159731|-0.1993571	chr1	 46048538	 46050383	-	NA	NA	NA	NA	NASP	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NASP:range=chr1:46049819-460838135'pad=0,hg19_refFlat_NASP:range=chr1:46049819-460838135'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.61;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00chr1:46049660-46060383"	NA	inner
CUST_1206_PI429285431	0.92245406	A	0.9259959	A	0.997547994678198	0	lncRNA	1197-1_{1..556}	"transcript_id ""ENST00000456031.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456031.1"" | genecode_v17"	chr2	199747297	199747852	-	ENSG00000231557.1	ENST00000456031.1	AC018717.1	AC018717.1-001	NA	NA	NA	inter
CUST_1714_PI429285431	1.2531024	A	0.99588335	A	1.19517265879489	0	lncRNA	1699-1_{1..511}	"transcript_id ""ENST00000604448.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604448.1"" | genecode_v17"	chr4	 25222025	 25222535	+	ENSG00000271172.1	ENST00000604448.1	RP11-660M5.1	RP11-660M5.1-001	NA	NA	NA	inter
CUST_17721_PI429285431	0.9206273	A	1.2768914	A	0.781184863248196	0	lncRNA	19451-1_{1..254}	lnc-ELTD1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELTD1-4:1	chr1	 79787090	 79787343	-	lnc-ELTD1-4	lnc-ELTD1-4:1	XLOC_000880	linc-ELTD1-6	NA	NA	NA	inter
CUST_10854_PI429285431	1.1673793	A	1.6046246	A	0.738543447308773	0	lncRNA	12392-1_{1..482}	lnc-AJAP1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AJAP1-3:4	chr1	  5063750	  5064231	+	lnc-AJAP1-3	lnc-AJAP1-3:4	XLOC_000036	linc-KCNAB2-2	NA	NA	NA	inter
CUST_12280_PI429285431	6.4885483	P	6.7370768	P	0.841754538624836	0	lncRNA	13889-1_{1..400}	lnc-THADA-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THADA-4:1	chr2	 43233140	 43233539	-	lnc-THADA-4	lnc-THADA-4:1	XLOC_002067	linc-HAAO-4	NA	NA	NA	inter
LNCA_24_P931201	1.4275137	A	3.1721356	P	0.29841213304874	0	lncRNA	XR_109863	XR_109863	XR_109863	100130071	Hs.668606	LOC100130071	GSQS6193	NA	THC2490178	NA	"PREDICTED: Homo sapiens GSQS6193 (LOC100130071), miscRNA [XR_109863]"	chr1:6327110-6327169	hs|1p36.31	Agilent_HUMAN_G3V2	XR_109863	XR_109863	chr1	  6327110	  6327169	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24112_PI429285431	3.6893272	P	1.6923274	A	3.99169032263039	0	lncRNA	25662-2_{3001..3719}	lnc-AC003682.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC003682.1-1:3	chr19	 58074024	 58074742	-	lnc-AC003682.1-1	lnc-AC003682.1-1:3	ENSG00000105132.8	ZNF550	ZNF550	NA	chr19:58061024-58067725	inter
CUST_10467_PI429285431	11.278971	P	11.1170225	P	1.11879716253128	0	lncRNA	11993-1_{1..470}	lnc-SFSWAP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SFSWAP-1:2	chr12	132148878	132149347	+	lnc-SFSWAP-1	lnc-SFSWAP-1:2	XLOC_009959	linc-SFSWAP-1	SFSWAP	NA	chr12:132152025-132159209	inter
CUST_34754_PI429285431	0.87383795	A	1.07684	A	0.868740950710798	0	lncRNA	36197-1_{1..944}	n341663|BC038540|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4134|NULL|-1.2284300|-0.3884559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341663|BC038540|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4134|NULL|-1.2284300|-0.3884559	chr9	 22113676	 22114619	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36388_PI429285431	0.9132544	A	0.9156511	A	0.998340113290649	0	lncRNA	37606-1_{1..798}	n344905|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_454|NULL|-1.2892400|-0.3505861	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344905|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_454|NULL|-1.2892400|-0.3505861	chr6	 56757551	 56758348	-	NA	NA	NA	NA	NA	"hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0,hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00"	NA	inter
CUST_31564_PI429285431	2.8767915	A	3.2903569	P	0.750765676673185	0	lncRNA	33322-1_{1..3000}	n338058|AL133652|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|445|NULL|1.0613300|-0.3136887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338058|AL133652|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|445|NULL|1.0613300|-0.3136887	chr1	 90222227	 90225226	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6379_PI429285431	8.271416	P	8.205564	P	1.04670289963048	0	lncRNA	6305-1_{1..565}	"transcript_id ""ENST00000588223.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588223.1"" | genecode_v17"	chr19	 19869205	 19869769	-	ENSG00000266904.1	ENST00000588223.1	LINC00663	LINC00663-005	NA	NA	NA	inter
CUST_25959_PI429285431	3.124001	A	3.5711784	P	0.733476475109732	0	lncRNA	27479-1_{1..597}	lnc-EIF4ENIF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF4ENIF1-1:1	chr22	 31835796	 31836392	-	lnc-EIF4ENIF1-1	lnc-EIF4ENIF1-1:1	ENSG00000240529.1	RP11-247I13.7	EIF4ENIF1	NA	chr22:31835345-31845893	inner
CUST_34168_PI429285431	0.8984977	A	0.89399153	A	1.00312832204893	0	lncRNA	35685-1_{1..633}	n341014|AF075023|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3480|NULL|-1.2839000|-0.4798866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341014|AF075023|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3480|NULL|-1.2839000|-0.4798866	chr11	 38035059	 38035691	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26705_PI429285431	0.9097341	A	0.9013175	A	1.00585099314405	0	lncRNA	28203-10_{27001..30000}	n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	chr13	 70708309	 70711308	+	NA	NA	NA	NA	KLHL1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0,hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0 3'pad=0 strand=- repeatMasking=none,-105.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr13:70671309-70682625"	NA	inner
CUST_26139_PI429285431	1.1206057	A	1.4070373	A	0.819927583061542	0	lncRNA	27650-1_{1..761}	lnc-FOXB1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXB1-3:1	chr15	 60922643	 60923403	+	lnc-FOXB1-3	lnc-FOXB1-3:1	ENSG00000245534.2	RP11-219B17.1	RORA	NA	chr15:60912643-60932836	inner
CUST_20299_PI429285431	11.373346	P	12.184204	P	0.570042741125247	0	lncRNA	21943-1_{1..403}	lnc-SMARCC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SMARCC2-1:1	chr12	 56583857	 56584259	-	lnc-SMARCC2-1	lnc-SMARCC2-1:1	ENSG00000258199.1	RP11-977G19.5	SMARCC2	NA	chr12:56573857-56583351	inter
CUST_52115_PI429285431	0.91161954	A	0.89602023	A	1.01087128535592	0	lncRNA	55640-1_{1..347}	hg19_lincRNAsTranscripts_TCONS_l2_00017587 range=chr22:18985657-19002251 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017587 range=chr22:18985657-19002251 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 18985657	 18986003	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15945_PI429285431	5.7575054	P	6.2299914	P	0.720721605682998	0	lncRNA	17642-1_{1..268}	lnc-SCNN1D-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCNN1D-1:2	chr1	  1215691	  1215958	+	lnc-SCNN1D-1	lnc-SCNN1D-1:2	XLOC_000015	linc-SCNN1D	UBE2J2	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00chr1:1205691-1209234"	NA	inter
CUST_45615_PI429285431	8.311454	P	8.977867	P	0.630071299595905	0	lncRNA	50000-1_{1..2194}	"gi|291575132|ref|NR_033413.1| Homo sapiens solute carrier family 29 (nucleoside transporters), member 3 (SLC29A3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|291575132|ref|NR_033413.1| Homo sapiens solute carrier family 29 (nucleoside transporters), member 3 (SLC29A3), transcript variant 3, non-coding RNA"	Chr10	 73079010	 73081203	+	55315	NR_033413.1	NA	NA	NA	NA	NA	inter
CUST_13662_PI429285431	1.7245772	A	2.393811	A	0.628840569134041	0	lncRNA	15300-1_{1..981}	lnc-PRSS3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRSS3-1:1	chr9	 33742229	 33743209	+	lnc-PRSS3-1	lnc-PRSS3-1:1	XLOC_007326	linc-PRSS3-1	PRSS3	NA	chr9:33750464-33752432	inter
CUST_18829_PI429285431	3.8944478	P	3.3911924	P	1.41740829779224	0	lncRNA	20522-1_{1..573}	lnc-ARHGEF35-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARHGEF35-1:2	chr7	144052431	144053003	-	lnc-ARHGEF35-1	lnc-ARHGEF35-1:2	ENSG00000244479	RP4-798C17.6	ARHGEF5	NA	chr7:144052489-144062800	inner
CUST_1303_PI429285431	9.390393	P	9.321641	P	1.04880902128204	0	lncRNA	1293-1_{1..579}	"transcript_id ""ENST00000426698.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426698.1"" | genecode_v17"	chr3	 10049987	 10050565	-	ENSG00000206567.5	ENST00000426698.1	AC022007.5	AC022007.5-005	LOC401052	NA	chr3:10048102-10052779	inner
CUST_12679_PI429285431	0.9013022	A	0.9079702	A	0.995388759168255	0	lncRNA	14296-1_{1..979}	lnc-FAM20C-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM20C-4:3	chr7	   391006	   391984	+	lnc-FAM20C-4	lnc-FAM20C-4:3	XLOC_005955	linc-HEATR2-5	NA	NA	NA	inter
CUST_12359_PI429285431	0.90274215	A	0.89611095	A	1.0046069772223	0	lncRNA	13971-1_{1..468}	lnc-WDR63-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR63-2:1	chr1	 85710525	 85710992	+	lnc-WDR63-2	lnc-WDR63-2:1	XLOC_000276	linc-CYR61-1	C1orf52	NA	chr1:85715636-85720928	inter
CUST_39305_PI429285431	6.159687	P	5.0716233	P	2.12588521186531	0	lncRNA	40272-2_{3001..3179}	n386315|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gto.2||1.9354800|-0.3043597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386315|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gto.2||1.9354800|-0.3043597	chr22	 22655462	 22655640	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60"	NA	inter
CUST_40310_PI429285431	5.2955728	P	5.245252	P	1.03549515261841	0	lncRNA	41113-1_{1..2080}	n408343|NR_029413|lncRNA|Homosapiens||RefGeneNoncode|NR_029413||6.0007500|-0.1559769	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408343|NR_029413|lncRNA|Homosapiens||RefGeneNoncode|NR_029413||6.0007500|-0.1559769	chr22	 37865100	 37867179	-	NA	NA	NA	NA	MFNG	NA	chr22:37865101-37882478	inter
CUST_15743_PI429285431	1.9507756	A	1.0152667	A	1.91256515942114	0	lncRNA	17430-1_{1..321}	lnc-OBFC2A-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OBFC2A-3:2	chr2	192679069	192679389	+	lnc-OBFC2A-3	lnc-OBFC2A-3:2	XLOC_001789	linc-SLC39A10-9	NA	NA	NA	inter
LNCA_21_P0005215	0.9178372	A	0.9028909	A	1.01041383615936	0	lncRNA	ENST00000442176	NA	NA	NA	NA	XLOC_005991	NA	ENST00000442176	THC2626433	NA	"BROAD Institute lincRNA (XLOC_005991), lincRNA [TCONS_00012958]"	chr7:15734826-15734885	hs|7p21.2	Agilent_HUMAN_G3V2	ENST00000442176	ENST00000442176	chr7	 15734826	 15734885	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46014_PI429285431	0.9184343	A	0.92906827	A	0.99265619218529	0	lncRNA	50298-1_{1..1232}	"gi|406362858|ref|NR_073171.1| Homo sapiens uncharacterized LOC101055625 (LOC101055625), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|406362858|ref|NR_073171.1| Homo sapiens uncharacterized LOC101055625 (LOC101055625), transcript variant 2, non-coding RNA"	Chr12	 29542227	 29543458	+	101055625	NR_073171.1	NA	NA	NA	NA	NA	inter
CUST_8697_PI429285431	0.9321612	A	0.9294528	A	1.00187908309192	0	lncRNA	10244-1_{1..2541}	lnc-GGNBP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-GGNBP2-1:1	chr17	 34898834	 34901374	+	lnc-GGNBP2-1	lnc-GGNBP2-1:1	ENSG00000249827	ENST00000511851	MYO19	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40chr17:34888834-34891305"	NA	inter
CUST_45619_PI429285431	4.340873	P	4.0078526	M	1.2596477914963	0	lncRNA	50003-2_{3001..3083}	"gi|335892805|ref|NR_038392.1| Homo sapiens anaphase promoting complex subunit 16 (ANAPC16), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|335892805|ref|NR_038392.1| Homo sapiens anaphase promoting complex subunit 16 (ANAPC16), transcript variant 6, non-coding RNA"	Chr10	 73978758	 73978840	+	119504	NR_038392.1	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.76;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.52;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.21;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90"	NA	inter
CUST_430_PI429285431	0.9004895	A	0.9189067	A	0.987315307327379	0	lncRNA	422-1_{1..594}	"transcript_id ""ENST00000455718.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455718.1"" | genecode_v17"	chr1	146473735	146474328	-	ENSG00000234225.1	ENST00000455718.1	RP4-704D21.2	RP4-704D21.2-002	KIAA1245	NA	chr1:146463735-146466121	inter
CUST_1524_PI429285431	0.9206421	A	1.3309759	A	0.752449257475905	0	lncRNA	1511-1_{1..547}	"transcript_id ""ENST00000474168.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000474168.1"" | genecode_v17"	chr3	162917363	162917909	-	ENSG00000241369.1	ENST00000474168.1	CT64	CT64-008	NA	NA	NA	inter
CUST_35233_PI429285431	2.262935	A	3.0825505	A	0.566592928092804	0	lncRNA	36634-1_{1..1564}	n342226|BC036435|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4716|NULL|1.6409600|-0.1567839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342226|BC036435|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4716|NULL|1.6409600|-0.1567839	chr1	 16860384	 16861947	-	NA	NA	NA	NA	LOC100506533	NA	chr1:16862280-16863350	inter
CUST_3154_PI429285431	0.91310155	A	0.9119834	A	1.00077534294301	0	lncRNA	3133-1_{1..453}	"transcript_id ""ENST00000522740.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522740.1"" | genecode_v17"	chr8	 64382843	 64383295	+	ENSG00000253894.1	ENST00000522740.1	RP11-45K10.2	RP11-45K10.2-003	NA	NA	NA	inter
CUST_49934_PI429285431	1.9662788	A	2.7682796	A	0.573553194067571	0	lncRNA	53684-1_{1..345}	hg19_lincRNAsTranscripts_TCONS_l2_00026147 range=chr7:105954987-105955711 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026147 range=chr7:105954987-105955711 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	105954987	105955331	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2752_PI429285431	3.030405	P	3.282325	P	0.83977805883655	0	lncRNA	2736-1_{1..418}	"transcript_id ""ENST00000414126.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414126.1"" | genecode_v17"	chr7	  3236258	  3236675	-	ENSG00000231892.1	ENST00000414126.1	AC073316.2	AC073316.2-001	NA	NA	NA	inter
CUST_201_PI429285431	0.89814645	A	0.89294565	A	1.00361142539521	0	lncRNA	191-1_{1..444}	"transcript_id ""ENST00000440358.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440358.1"" | genecode_v17"	chr1	 31283225	 31283668	-	ENSG00000229607.1	ENST00000440358.1	RP5-1125N11.1	RP5-1125N11.1-001	NA	NA	NA	inter
CUST_26479_PI429285431	2.0409482	A	2.3560162	A	0.803813102916809	0	lncRNA	27987-1_{1..1489}	lnc-RARS-4:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RARS-4:9	chr5	168450836	168452324	+	lnc-RARS-4	lnc-RARS-4:9	ENSG00000248222.1	CTB-174D11.1	SLIT3	NA	chr5:168440836-168461992	inner
CUST_37259_PI429285431	0.9139434	A	0.89706737	A	1.01176625676743	0	lncRNA	38366-1_{1..808}	n345695|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1244|NULL|-1.3112500|-0.3189561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345695|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1244|NULL|-1.3112500|-0.3189561	chr6	 41107198	 41108005	+	NA	NA	NA	NA	TREML1	NA	chr6:41117342-41118541	inter
CUST_43727_PI429285431	6.8778906	P	6.8067155	P	1.05057204427717	0	lncRNA	48471-1_{1..942}	"gi|224591396|ref|NR_027285.1| Homo sapiens FLVCR1 antisense RNA 1 (head to head) (FLVCR1-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224591396|ref|NR_027285.1| Homo sapiens FLVCR1 antisense RNA 1 (head to head) (FLVCR1-AS1), transcript variant 1, non-coding RNA"	Chr1	213029946	213030887	-	642946	NR_027285.1	NA	NA	NA	NA	NA	inter
CUST_7586_PI429285431	7.739975	P	7.436	P	1.23454121373914	0	lncRNA	9221-1_{1..712}	lnc-ZNF644-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF644-1:3	chr1	 91317040	 91317751	-	lnc-ZNF644-1	lnc-ZNF644-1:3	ENSG00000233593	XLOC_000915	NA	NA	NA	inter
CUST_23682_PI429285431	1.4599273	A	2.1708615	A	0.610924413904546	0	lncRNA	25247-1_{1..562}	lnc-KCTD6-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCTD6-4:3	chr3	 58956084	 58956645	+	lnc-KCTD6-4	lnc-KCTD6-4:3	ENSG00000242428.1	RP11-147N17.1	C3orf67	"hg19_refFlat_C3orf67:range=chr3:58728187-589233915'pad=0,hg19_refFlat_C3orf67:range=chr3:58728187-589233915'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40chr3:58946084-58966386"	NA	inner
CUST_40522_PI429285431	1.1434509	A	1.0701516	A	1.05212002828177	0	lncRNA	41284-2_{3001..3903}	n409565|NR_033948|lncRNA|Homosapiens||RefGeneNoncode|NR_033948||5.7493000|-0.1809634	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409565|NR_033948|lncRNA|Homosapiens||RefGeneNoncode|NR_033948||5.7493000|-0.1809634	chr12	121573630	121574532	+	NA	NA	NA	NA	P2RX7	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50chr12:121570622-121624354"	NA	inter
CUST_47551_PI429285431	8.715859	P	8.677101	P	1.02722911585282	0	lncRNA	51559-2_{3001..3287}	"gi|225543350|ref|NR_027383.1| Homo sapiens A kinase (PRKA) anchor protein 17A (AKAP17A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225543350|ref|NR_027383.1| Homo sapiens A kinase (PRKA) anchor protein 17A (AKAP17A), transcript variant 2, non-coding RNA"	ChrY	  1663486	  1663772	+	8227	NR_027383.1	NA	NA	NA	NA	NA	inter
CUST_26720_PI429285431	8.9669695	P	8.709123	P	1.19569257059954	0	lncRNA	28216-1_{1..266}	n3892|AY077738|scaRNA|Homosapiens|U88|NONCODEv2.0|n3892|NULL|-1.5906100|-0.2343171	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n3892|AY077738|scaRNA|Homosapiens|U88|NONCODEv2.0|n3892|NULL|-1.5906100|-0.2343171	chr2	234197321	234197586	+	NA	NA	NA	NA	ATG16L1	NA	chr2:234187321-234204320	inner
CUST_20840_PI429285431	2.9881945	A	3.262942	A	0.82659497586906	0	lncRNA	22471-1_{1..510}	lnc-TMC5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMC5-1:1	chr16	 19513300	 19513809	+	lnc-TMC5-1	lnc-TMC5-1:1	ENSG00000260934.1	CTA-363E6.7	GDE1	NA	chr16:19513015-19523608	inner
CUST_5270_PI429285431	0.90415597	A	0.99264234	A	0.940508984035202	0	lncRNA	5210-1_{1..476}	"transcript_id ""ENST00000559428.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559428.1"" | genecode_v17"	chr15	 81926228	 81926703	-	ENSG00000259610.1	ENST00000559428.1	RP11-499F3.1	RP11-499F3.1-001	NA	NA	NA	inter
CUST_48427_PI429285431	4.7287183	P	4.959265	P	0.852311852474306	0	lncRNA	52279-1_{1..888}	hg19_lincRNAsTranscripts_TCONS_l2_00001517 range=chr1:149380676-149400614 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001517 range=chr1:149380676-149400614 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	149380676	149381563	-	NA	NA	NA	NA	NA	NA	NA	inner
CUST_33429_PI429285431	0.9235627	A	0.91410303	A	1.0065784874056	0	lncRNA	35007-1_{1..1597}	n340159|AF052141|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2619|NULL|-0.9023420|-0.3603650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340159|AF052141|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2619|NULL|-0.9023420|-0.3603650	chr4	 86933448	 86935044	-	NA	NA	NA	NA	MAPK10	NA	chr4:86936276-86945027	inter
CUST_14428_PI429285431	0.91368103	A	1.0851145	A	0.887959960632705	0	lncRNA	16089-1_{1..1024}	lnc-STX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STX2-1:1	chr12	131260293	131261316	-	lnc-STX2-1	lnc-STX2-1:1	XLOC_010266	linc-RIMBP2	NA	NA	NA	inter
CUST_28171_PI429285431	3.9728098	P	4.2107296	P	0.847967102156625	0	lncRNA	29797-1_{1..506}	n325449|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323698|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323698|-1.2049200|-0.3182130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325449|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323698|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323698|-1.2049200|-0.3182130	chr2	  6886461	  6886966	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38926_PI429285431	1.7403669	A	0.921667	A	1.76381579478995	0	lncRNA	39916-1_{1..2019}	n385031|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qls.1||-1.0751600|-0.2829165	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385031|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qls.1||-1.0751600|-0.2829165	chr6	147163036	147165054	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34042_PI429285431	0.9035709	A	0.8951974	A	1.00582094415308	0	lncRNA	35574-1_{1..1054}	n340860|BC038788|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3325|NULL|-0.9726570|-0.2441042	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340860|BC038788|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3325|NULL|-0.9726570|-0.2441042	chr6	 17501590	 17502643	-	NA	NA	NA	NA	CAP2	NA	chr6:17491590-17521496	inner
CUST_11124_PI429285431	0.91164005	A	0.98795164	A	0.948479442580344	0	lncRNA	12682-1_{1..1923}	lnc-UBIAD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBIAD1-2:1	chr1	 11437344	 11439266	+	lnc-UBIAD1-2	lnc-UBIAD1-2:1	XLOC_000052	linc-PTCHD2-1	NA	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
CUST_43937_PI429285431	2.1823328	A	3.5936654	P	0.37596425277368	0	lncRNA	48647-1_{1..1939}	"gi|384229068|ref|NR_047570.1| Homo sapiens uncharacterized LOC654433 (LOC654433), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|384229068|ref|NR_047570.1| Homo sapiens uncharacterized LOC654433 (LOC654433), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_047570.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PAX8:range=chr2:113976110-1140359715'pad=0,hg19_refFlat_PAX8:range=chr2:113976110-1140359715'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00"	NA	Unknown
CUST_43196_PI429285431	3.273554	P	0.91434616	A	5.13088553221284	0	lncRNA	48010-1_{1..785}	ENST00000602636 havana:sense_intronic chromosome:GRCh37:13:51936795:51937579:-1 gene:ENSG00000270101 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602636 havana:sense_intronic chromosome:GRCh37:13:51936795:51937579:-1 gene:ENSG00000270101 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr13	 51936795	 51937579	-	ENSG00000270101	ENST00000602636	NA	NA	SERPINE3	NA	chr13:51926795-51936239	inner
CUST_38880_PI429285431	0.92739576	A	1.8889996	A	0.513485755246411	0	lncRNA	39867-1_{1..2301}	n384797|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003mth.1||-1.0339800|-0.3566378	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384797|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003mth.1||-1.0339800|-0.3566378	chr6	   709104	   711404	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007369	1.6509081	A	0.9149392	A	1.66551563805784	0	lncRNA	TCONS_00019699	NA	NA	NA	NA	XLOC_009497	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009497), lincRNA [TCONS_00019699]"	chr11:72239291-72239232	hs|11q13.4	Agilent_HUMAN_G3V2	TCONS_00019699	TCONS_00019699	chr11	 72239232	 72239291	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002375	4.13644	P	3.7873025	P	1.27379887242971	0	lncRNA	ENST00000445534	NA	NA	NA	NA	XLOC_001910	NA	ENST00000445534	NA	NA	"BROAD Institute lincRNA (XLOC_001910), lincRNA [TCONS_00004062]"	chr2:238165756-238165815	hs|2q37.3	Agilent_HUMAN_G3V2	ENST00000445534	ENST00000445534	chr2	238165756	238165815	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1793_PI429285431	1.046055	A	1.0343993	A	1.00811183971479	0	lncRNA	1779-1_{1..448}	"transcript_id ""ENST00000508825.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508825.1"" | genecode_v17"	chr4	 64334419	 64334866	-	ENSG00000250775.1	ENST00000508825.1	RP11-12K22.1	RP11-12K22.1-001	NA	NA	NA	inter
LNCA_21_P0009510	4.1076455	P	4.3110266	P	0.868512729920821	0	lncRNA	TCONS_00026384	NA	NA	NA	NA	XLOC_012735	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012735), lincRNA [TCONS_00026384]"	chr18:77586475-77616409	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026384	TCONS_00026384	chr18	 77586475	 77616409	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12636_PI429285431	0.94981796	A	0.9198688	A	1.02097614627953	0	lncRNA	14253-1_{1..780}	lnc-EFR3B-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFR3B-3:6	chr2	 25258142	 25258921	+	lnc-EFR3B-3	lnc-EFR3B-3:6	XLOC_001398	linc-EFR3B	EFR3B	NA	chr2:25264973-25268533	inter
CUST_17786_PI429285431	0.91564846	A	1.5027196	A	0.665692980161523	0	lncRNA	19518-1_{1..372}	lnc-VRK2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VRK2-3:2	chr2	 57940102	 57940473	+	lnc-VRK2-3	lnc-VRK2-3:2	XLOC_001483	linc-VRK2-2	NA	NA	NA	inter
CUST_8520_PI429285431	1.0558407	A	0.9002959	A	1.11384215522887	0	lncRNA	10081-1_{1..1899}	lnc-RPIA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RPIA-1:1	chr2	 89077719	 89079617	+	lnc-RPIA-1	lnc-RPIA-1:1	ENSG00000230006	ANKRD36BP2	NA	NA	NA	inter
CUST_25951_PI429285431	0.9247727	A	1.571434	A	0.638756822264569	0	lncRNA	27471-1_{1..493}	lnc-C12orf49-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C12orf49-2:1	chr12	116618979	116619471	-	lnc-C12orf49-2	lnc-C12orf49-2:1	ENSG00000258337.1	RP11-115H15.2	MED13L	NA	chr12:116608979-116629100	inner
CUST_27889_PI429285431	4.343983	P	2.3801527	A	3.90096296025369	0	lncRNA	29483-1_{1..799}	n325126|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332166|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332166|0.7936810|-0.2660798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325126|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332166|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332166|0.7936810|-0.2660798	chr2	145162449	145163247	-	NA	NA	NA	NA	ZEB2	NA	chr2:145152449-145174222	inner
CUST_37518_PI429285431	11.88945	P	11.300152	P	1.50451448858779	0	lncRNA	38621-1_{1..482}	n345991|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1540|NULL|-1.4580900|-0.1496235	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345991|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1540|NULL|-1.4580900|-0.1496235	chr20	 30161086	 30161567	+	NA	NA	NA	NA	HM13	NA	chr20:30151086-30157370	inter
CUST_49846_PI429285431	7.4530716	P	7.3909674	P	1.0439873276609	0	lncRNA	53602-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00026657 range=chr7:65982683-66057999 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026657 range=chr7:65982683-66057999 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 65988683	 65991682	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-59.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_GTF2IRD1:range=chr7:73922411-740167605'pad=0,hg19_refFlat_GTF2IRD1:range=chr7:73922411-740167605'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.01;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.90;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_14230_PI429285431	0.9092195	A	1.2402865	A	0.794948332006641	0	lncRNA	15888-1_{1..615}	lnc-TPO-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPO-1:4	chr2	  1558089	  1558703	+	lnc-TPO-1	lnc-TPO-1:4	XLOC_001313	linc-TTC15-9	NA	NA	NA	inter
CUST_23043_PI429285431	2.6499567	A	2.5189564	A	1.09505269850336	0	lncRNA	24614-1_{1..1987}	lnc-AGGF1-3:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AGGF1-3:16	chr5	 76443477	 76445463	+	lnc-AGGF1-3	lnc-AGGF1-3:16	ENSG00000250802.2	CTC-564N23.3	NA	NA	NA	inter
CUST_2493_PI429285431	0.9015001	A	0.89848113	A	1.00209478153931	0	lncRNA	2485-1_{1..543}	"transcript_id ""ENST00000447728.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447728.1"" | genecode_v17"	chr6	 21522707	 21523249	-	ENSG00000231754.1	ENST00000447728.1	RP11-204E9.1	RP11-204E9.1-001	NA	NA	NA	inter
CUST_27134_PI429285431	0.91884494	A	0.93290097	A	0.990304410697598	0	lncRNA	28670-1_{1..540}	n324250|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324258|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324258|-1.0939800|-0.2212386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324250|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324258|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324258|-1.0939800|-0.2212386	chr7	  6087827	  6088366	+	NA	NA	NA	NA	EIF2AK1	NA	chr7:6077827-6098860	inner
CUST_28702_PI429285431	2.5297928	A	2.3135097	A	1.16173667710975	0	lncRNA	30402-1_{1..703}	n326091|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046513|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046513|-1.1571300|-0.3851456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326091|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046513|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046513|-1.1571300|-0.3851456	chr10	  4683352	  4684054	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6713_PI429285431	1.6753129	A	1.1406591	A	1.44859449716521	0	lncRNA	6661-1_{1..2010}	"transcript_id ""ENST00000425497.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000425497.1"" | genecode_v17"	chr20	 48884023	 48886032	+	ENSG00000224397.1	ENST00000425497.1	RP11-290F20.3	RP11-290F20.3-001	NA	"hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-37.54"	NA	inter
CUST_16621_PI429285431	0.91655695	A	2.7656717	A	0.277562630575286	0	lncRNA	18321-1_{1..2087}	lnc-EIF2AK4-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2AK4-2:8	chr15	 40348654	 40350740	+	lnc-EIF2AK4-2	lnc-EIF2AK4-2:8	XLOC_011219	linc-BUB1B	NA	NA	NA	inter
CUST_41228_PI429285431	0.90129185	A	0.8989576	A	1.00161928844016	0	lncRNA	42134-1_{1..61}	ENST00000580479 ncrna:miRNA chromosome:GRCh37:9:36823536:36823596:-1 gene:ENSG00000266255 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580479 ncrna:miRNA chromosome:GRCh37:9:36823536:36823596:-1 gene:ENSG00000266255 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 36823536	 36823596	-	ENSG00000266255	ENST00000580479	NA	NA	NA	NA	NA	inter
LNCA_21_P0014121	1.0062534	A	0.92797077	A	1.05576052528811	0	lncRNA	XR_132495	XR_132495	XR_132495	NA	Hs.730373	LOC100507335	uncharacterized LOC100507335	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507335, transcript variant 2 (LOC100507335), miscRNA [XR_132495]"	chr3:139738454-139738395	hs|3q23	Agilent_HUMAN_G3V2	XR_132495	XR_132495	chr3	139738395	139738454	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17794_PI429285431	0.9221464	A	0.9060004	A	1.01125441410249	0	lncRNA	19526-1_{1..428}	lnc-FBXL7-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXL7-4:1	chr5	 16446036	 16446463	+	lnc-FBXL7-4	lnc-FBXL7-4:1	XLOC_004303	linc-BASP1-3	ZNF622	NA	chr5:16451628-16456407	inter
CUST_39092_PI429285431	0.92353666	A	0.9101659	A	1.00931098460804	0	lncRNA	40068-1_{1..548}	n385642|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azk.1||-0.9631610|-0.2463720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385642|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azk.1||-0.9631610|-0.2463720	chr9	102117621	102118168	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0000909	1.51899	A	3.505927	P	0.252273924587093	0	lncRNA	ENST00000448179	XR_108282	XR_108282	NA	Hs.551839	XLOC_000011	NA	ENST00000448179	THC2491916	NA	"PREDICTED: Homo sapiens hypothetical LOC284600 (LOC284600), miscRNA [XR_108282]"	chr1:849983-850042	hs|1p36.33	Agilent_HUMAN_G3V2	ENST00000448179	ENST00000448179	chr1	   849983	   850042	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42670_PI429285431	7.069097	P	7.2466946	P	0.884174112661534	0	lncRNA	45580-1_{1..134}	ENST00000362915 ncrna:snoRNA chromosome:GRCh37:11:811681:811814:1 gene:ENSG00000199785 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362915 ncrna:snoRNA chromosome:GRCh37:11:811681:811814:1 gene:ENSG00000199785 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	   811681	   811814	+	ENSG00000199785	ENST00000362915	NA	NA	PNPLA2	NA	chr11:818901-821814	inter
CUST_38731_PI429285431	11.007553	P	10.767736	P	1.18084286681291	0	lncRNA	39725-1_{1..360}	n384234|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ccf.2||-1.1670700|-0.4967439	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384234|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ccf.2||-1.1670700|-0.4967439	chr3	 22424045	 22424404	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5762_PI429285431	4.6631675	P	4.777215	P	0.923992149974707	0	lncRNA	5687-1_{1..684}	"transcript_id ""ENST00000421796.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421796.2"" | genecode_v17"	chr17	 19351555	 19352238	-	ENSG00000235979.3	ENST00000421796.2	AC004448.5	AC004448.5-002	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20"	NA	inter
CUST_15137_PI429285431	0.8965349	A	0.9008182	A	0.997035445676774	0	lncRNA	16798-1_{1..581}	lnc-SORCS3-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SORCS3-6:1	chr10	108071151	108071731	+	lnc-SORCS3-6	lnc-SORCS3-6:1	XLOC_008604	linc-ADD3-7	NA	NA	NA	inter
CUST_39354_PI429285431	0.92112315	A	0.9122177	A	1.00619187847341	0	lncRNA	40318-3_{6001..6338}	n386440|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lal.1||1.1334400|-0.1965963	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386440|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lal.1||1.1334400|-0.1965963	chr7	 72339317	 72339654	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30"	NA	inter
CUST_38240_PI429285431	0.9198111	A	0.9236659	A	0.997331622712912	0	lncRNA	39301-1_{1..1554}	n381734|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001oqd.1||-0.8985860|-0.1851180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381734|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001oqd.1||-0.8985860|-0.1851180	chr11	 70449407	 70450960	+	NA	NA	NA	NA	SHANK2	NA	chr11:70439407-70460961	inner
CUST_10827_PI429285431	4.1934977	P	3.860321	P	1.25978426775057	0	lncRNA	12362-1_{1..3000}	lnc-MLN-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-MLN-1:4	chr6	 33860473	 33863472	-	lnc-MLN-1	lnc-MLN-1:4	XLOC_005689	linc-MLN	NA	NA	NA	inter
CUST_14219_PI429285431	0.91890234	A	0.920185	A	0.999111322944936	0	lncRNA	15875-1_{1..423}	lnc-CLDN23-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLDN23-1:3	chr8	  8426697	  8427119	+	lnc-CLDN23-1	lnc-CLDN23-1:3	XLOC_006698	linc-CLDN23-1	NA	NA	NA	inter
CUST_4915_PI429285431	2.8961174	P	3.1562414	P	0.835016146497092	0	lncRNA	4857-1_{1..789}	"transcript_id ""ENST00000555798.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555798.1"" | genecode_v17"	chr14	 83108964	 83109752	+	ENSG00000258743.1	ENST00000555798.1	RP11-406A9.2	RP11-406A9.2-003	NA	NA	NA	inter
CUST_44319_PI429285431	7.699075	P	7.14386	P	1.46938759486408	0	lncRNA	48951-1_{1..2319}	"gi|195927057|ref|NR_003265.3| Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2 (SDHAP2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|195927057|ref|NR_003265.3| Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2 (SDHAP2), non-coding RNA"	Chr3	195384910	195387228	+	727956	NR_003265.3	NA	NA	NA	NA	NA	inter
LNCA_21_P0006250	7.6660833	P	7.899853	P	0.850409901689241	0	lncRNA	TCONS_00016264	NA	NA	NA	NA	XLOC_007638	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007638), lincRNA [TCONS_00016264]"	chr9:6408650-6408591	hs|9p24.1	Agilent_HUMAN_G3V2	TCONS_00016264	TCONS_00016264	chr9	  6408591	  6408650	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11167_PI429285431	0.91433394	A	1.045653	A	0.912996313490917	0	lncRNA	12724-1_{1..837}	lnc-HLA-DRA-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HLA-DRA-1:2	chr6	 32361226	 32362062	+	lnc-HLA-DRA-1	lnc-HLA-DRA-1:2	XLOC_005254	linc-C6orf10-AS	BTNL2	NA	chr6:32362513-32371247	inter
CUST_40140_PI429285431	0.91171545	A	0.97787064	A	0.955180182590837	0	lncRNA	40978-1_{1..1073}	n407754|NR_027273|lncRNA|Homosapiens||RefGeneNoncode|NR_027273||4.7872100|-0.1336245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n407754|NR_027273|lncRNA|Homosapiens||RefGeneNoncode|NR_027273||4.7872100|-0.1336245	chr21	 43442112	 43443184	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25316_PI429285431	6.114829	P	6.249589	P	0.910821340968276	0	lncRNA	26846-1_{1..707}	lnc-GNAI1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNAI1-2:6	chr7	 79088852	 79089558	+	lnc-GNAI1-2	lnc-GNAI1-2:6	ENSG00000234456.2	MAGI2-AS3	MAGI2	NA	chr7:79078852-79082890	inter
CUST_14993_PI429285431	4.257187	P	3.9772356	P	1.21415398255801	0	lncRNA	16656-1_{1..329}	lnc-AC018682.6.1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC018682.6.1-1:9	chr2	 46667266	 46667594	+	lnc-AC018682.6.1-1	lnc-AC018682.6.1-1:9	XLOC_001455	linc-LOC388946	NA	NA	NA	inter
CUST_30732_PI429285431	1.4508536	A	2.8321123	A	0.383883724308127	0	lncRNA	32515-1_{1..200}	n336285|Y13808|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325798|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325798|-1.1857800|-0.4087462	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336285|Y13808|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325798|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325798|-1.1857800|-0.4087462	chr3	 15907724	 15907923	+	NA	NA	NA	NA	ANKRD28	NA	chr3:15897724-15901053	inter
CUST_44349_PI429285431	5.1302557	P	5.0984197	P	1.02231231148937	0	lncRNA	48973-1_{1..3000}	"gi|223890188|ref|NR_026892.1| Homo sapiens AFAP1 antisense RNA 1 (AFAP1-AS1), antisense RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223890188|ref|NR_026892.1| Homo sapiens AFAP1 antisense RNA 1 (AFAP1-AS1), antisense RNA"	NA	NA	NA	NA	NA	NR_026892.1	NA	NA	NA	"hg19_refFlat_AFAP1:range=chr4:7765492-78738055'pad=0,hg19_refFlat_AFAP1:range=chr4:7765492-78738055'pad=0 3'pad=0 strand=- repeatMasking=none,-102.50"	NA	Unknown
CUST_35524_PI429285431	1.1967658	A	1.30301	A	0.929003411747107	0	lncRNA	36930-1_{1..2882}	n342630|AK098328|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5132|NULL|-0.1902830|-0.2602593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342630|AK098328|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5132|NULL|-0.1902830|-0.2602593	chr5	   214012	   216893	-	NA	NA	NA	NA	CCDC127	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50chr5:204875-218297"	NA	inner
CUST_8691_PI429285431	1.4516939	A	1.2428156	A	1.15578920467455	0	lncRNA	10238-2_{3001..4185}	lnc-LL22NC03-75H12.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-LL22NC03-75H12.2.1-2:1	chr22	 48028077	 48029261	-	lnc-LL22NC03-75H12.2.1-2	lnc-LL22NC03-75H12.2.1-2:1	ENSG00000205634	RP11-191L9.6	NA	NA	NA	inter
CUST_25382_PI429285431	0.9263851	A	0.9144616	A	1.0082989876576	0	lncRNA	26913-1_{1..538}	lnc-SRPK2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRPK2-2:1	chr7	104653379	104653916	-	lnc-SRPK2-2	lnc-SRPK2-2:1	ENSG00000228393.3	RP11-325F22.3	MLL5	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30chr7:104654637-104663491"	NA	inter
CUST_27049_PI429285431	0.90683746	A	0.90424705	A	1.00179714832688	0	lncRNA	28583-1_{1..499}	n324160|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051653|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051653|-1.1431500|-0.3039296	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324160|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051653|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051653|-1.1431500|-0.3039296	chr9	  6037359	  6037857	+	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90"	NA	inter
LNCA_21_P0005371	0.92999876	A	0.91840196	A	1.00807068300904	0	lncRNA	TCONS_00013408	NA	NA	NA	NA	XLOC_006039	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006039), lincRNA [TCONS_00013408]"	chr7:33916948-33917007	hs|7p14.3	Agilent_HUMAN_G3V2	TCONS_00013408	TCONS_00013408	chr7	 33916948	 33917007	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014609	3.9358165	P	4.481781	P	0.684933343741795	0	lncRNA	XR_110518	XR_110518	XR_110518	NA	NA	LOC100506852	uncharacterized LOC100506852	NA	THC2641466	NA	"PREDICTED: Homo sapiens hypothetical LOC100506852 (LOC100506852), miscRNA [XR_110518]"	chr11:111346015-111346074	hs|11q23.1	Agilent_HUMAN_G3V2	XR_110518	XR_110518	chr11	111346015	111346074	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17331_PI429285431	7.734825	P	7.7343707	P	1.00031494634932	0	lncRNA	19049-1_{1..885}	lnc-MTRR-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTRR-2:1	chr5	  8051309	  8052193	+	lnc-MTRR-2	lnc-MTRR-2:1	XLOC_004283	linc-CCT5-9	NA	NA	NA	inter
CUST_29550_PI429285431	5.142931	P	5.6009974	P	0.727961269330899	0	lncRNA	31310-1_{1..842}	n333030|AF174592|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072602|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072602|5.5866800|-0.1128762	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333030|AF174592|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072602|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072602|5.5866800|-0.1128762	chr8	145580069	145580910	-	NA	NA	NA	NA	FBXL6	NA	chr8:145579091-145582132	inner
CUST_50774_PI429285431	4.1672997	P	4.3655396	P	0.871613290390773	0	lncRNA	54431-3_{6001..6984}	hg19_lincRNAsTranscripts_TCONS_l2_00004573 range=chr11:65266529-65274354 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004573 range=chr11:65266529-65274354 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65272529	 65273512	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49076_PI429285431	0.92326236	A	0.9098088	A	1.0093689132384	0	lncRNA	52900-2_{3001..5565}	hg19_lincRNAsTranscripts_TCONS_l2_00020386 range=chr4:6202500-6239906 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020386 range=chr4:6202500-6239906 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	  6205500	  6208064	+	NA	NA	NA	NA	JAKMIP1	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-58.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40chr4:6192500-6202318"	NA	inter
CUST_38954_PI429285431	6.302691	P	6.6366425	P	0.793360513649597	0	lncRNA	39940-1_{1..1442}	n385129|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003teo.1||1.0322000|-0.2072867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385129|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003teo.1||1.0322000|-0.2072867	chr7	 35082722	 35084163	+	NA	NA	NA	NA	DPY19L1	NA	chr7:35072722-35077653	inter
LNCA_21_P0007264	0.9263189	A	0.9128252	A	1.00939699722751	0	lncRNA	TCONS_00019442	NA	NA	NA	NA	XLOC_009252	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009252), lincRNA [TCONS_00019442]"	chr11:94371479-94373010	hs|11q21	Agilent_HUMAN_G3V2	TCONS_00019442	TCONS_00019442	chr11	 94371479	 94373010	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2017_PI429285431	0.9236605	A	0.91903037	A	1.00321451706975	0	lncRNA	2008-1_{1..564}	"transcript_id ""ENST00000502952.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502952.1"" | genecode_v17"	chr4	188477065	188477628	-	ENSG00000250590.1	ENST00000502952.1	RP11-565A3.2	RP11-565A3.2-004	NA	NA	NA	inter
CUST_232_PI429285431	1.4124032	A	1.7949466	A	0.767084066627874	0	lncRNA	223-1_{1..383}	"transcript_id ""ENST00000429099.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429099.1"" | genecode_v17"	chr1	 53814160	 53814542	-	ENSG00000226938.1	ENST00000429099.1	RP11-117D22.1	RP11-117D22.1-001	NA	NA	NA	inter
CUST_9403_PI429285431	0.9236841	A	0.9101484	A	1.00942638340393	0	lncRNA	10906-1_{1..2093}	lnc-TCF4-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-TCF4-5:4	chr18	 53804537	 53806629	-	lnc-TCF4-5	lnc-TCF4-5:4	XLOC_012852	linc-TCF4-4	NA	NA	NA	inter
CUST_2755_PI429285431	4.227803	P	4.325395	P	0.934591615806994	0	lncRNA	2738-1_{1..524}	"transcript_id ""ENST00000436915.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436915.1"" | genecode_v17"	chr7	  6120734	  6121257	+	ENSG00000231704.1	ENST00000436915.1	AC004895.4	AC004895.4-002	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60"	NA	inter
LNCA_21_P0014815	3.0272992	P	2.17285	A	1.80806832912176	0	lncRNA	XR_132648	XR_132648	XR_132648	NA	Hs.631680	LOC646778	uncharacterized LOC646778	NA	THC2606519	NA	"PREDICTED: Homo sapiens hypothetical LOC646778 (LOC646778), miscRNA [XR_132648]"	chr18:29266538-29266597	hs|18q12.1	Agilent_HUMAN_G3V2	XR_132648	XR_132648	chr18	 29266538	 29266597	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38348_PI429285431	0.8986592	A	0.89281285	A	1.0040606030175	0	lncRNA	39392-1_{1..2139}	n382096|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vpg.1||2.8149500|-0.2288955	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382096|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vpg.1||2.8149500|-0.2288955	chr13	102944676	102946814	-	NA	NA	NA	NA	FGF14	NA	chr13:102934676-103029749	inner
CUST_41552_PI429285431	0.9074992	A	0.9027566	A	1.00329272897991	0	lncRNA	42846-1_{1..90}	ENST00000384914 ncrna:miRNA chromosome:GRCh37:2:220158833:220158922:-1 gene:ENSG00000207647 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384914 ncrna:miRNA chromosome:GRCh37:2:220158833:220158922:-1 gene:ENSG00000207647 gene_biotype:miRNA transcript_biotype:miRNA	chr2	220158833	220158922	-	ENSG00000207647	ENST00000384914	NA	NA	PTPRN	NA	chr2:220154345-220168922	inner
CUST_36833_PI429285431	0.9126044	A	0.957833	A	0.969136241791483	0	lncRNA	37999-1_{1..3000}	n345307|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_856|NULL|-1.3929100|-0.3403179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345307|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_856|NULL|-1.3929100|-0.3403179	chr15	 64762012	 64765011	-	NA	NA	NA	NA	ZNF609	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20chr15:64791619-64794651"	NA	inter
CUST_13873_PI429285431	0.90325356	A	0.8994382	A	1.00264810608208	0	lncRNA	15517-1_{1..264}	lnc-LRRC4C-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC4C-4:1	chr11	 39115800	 39116063	-	lnc-LRRC4C-4	lnc-LRRC4C-4:1	XLOC_009419	linc-RAG2-2	NA	NA	NA	inter
CUST_26109_PI429285431	0.90049565	A	0.8992589	A	1.00085761731916	0	lncRNA	27620-1_{1..600}	lnc-ITM2C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITM2C-2:1	chr2	231774366	231774965	+	lnc-ITM2C-2	lnc-ITM2C-2:1	ENSG00000230385.1	AC012507.4	GPR55	"hg19_refFlat_GPR55:range=chr2:231774718-2317756775'pad=0,hg19_refFlat_GPR55:range=chr2:231774718-2317756775'pad=0 3'pad=0 strand=- repeatMasking=none,-100.10chr2:231772043-231784817"	NA	inner
CUST_38280_PI429285431	0.9011317	A	0.8954576	A	1.00394073075776	0	lncRNA	39335-1_{1..1050}	n381899|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001szx.2||-0.3242300|-0.3994070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381899|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001szx.2||-0.3242300|-0.3994070	chr12	 85258119	 85259168	-	NA	NA	NA	NA	SLC6A15	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.86;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80chr12:85253267-85269169"	NA	inner
CUST_29943_PI429285431	1.0520302	A	2.1460488	A	0.468454683827674	0	lncRNA	31707-1_{1..453}	n334133|M64353|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196122|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196122|2.2290700|-0.0829213	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334133|M64353|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196122|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196122|2.2290700|-0.0829213	chr7	142028120	142028572	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009041	0.9174832	A	0.902642	A	1.01034023042624	0	lncRNA	TCONS_00024691	NA	NA	NA	NA	XLOC_011971	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011971), lincRNA [TCONS_00024691]"	chr16:59436546-59436487	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024691	TCONS_00024691	chr16	 59436487	 59436546	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001856	7.914487	P	7.7788844	P	1.09855157251652	0	lncRNA	ENST00000442821	NA	NA	NA	NA	XLOC_001452	NA	ENST00000442821	THC2706192	NA	"BROAD Institute lincRNA (XLOC_001452), lincRNA [TCONS_00002885]"	chr2:45395834-45395893	hs|2p21	Agilent_HUMAN_G3V2	ENST00000442821	ENST00000442821	chr2	 45395834	 45395893	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20843_PI429285431	3.059181	P	2.9550753	A	1.07482791794437	0	lncRNA	22474-1_{1..562}	lnc-SENP5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SENP5-1:1	chr3	196669264	196669825	+	lnc-SENP5-1	lnc-SENP5-1:1	ENSG00000225578.1	NCBP2-AS1	SENP5	"hg19_refFlat_NCBP2:range=chr3:196663882-1966693745'pad=0,hg19_refFlat_NCBP2:range=chr3:196663882-1966693745'pad=0 3'pad=0 strand=- repeatMasking=none,-95.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.90chr3:196659264-196661585"	NA	inner
CUST_46423_PI429285431	4.378732	P	4.6020317	P	0.856603988618125	0	lncRNA	50635-1_{1..741}	"gi|336391103|ref|NR_038852.1| Homo sapiens uncharacterized LOC503519 (LOC503519), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|336391103|ref|NR_038852.1| Homo sapiens uncharacterized LOC503519 (LOC503519), non-coding RNA"	Chr15	 26360960	 26361700	+	503519	NR_038852.1	NA	NA	NA	NA	NA	inter
CUST_42911_PI429285431	0.8914108	A	0.8889915	A	1.00167833780895	0	lncRNA	46009-1_{1..68}	ENST00000364339 ncrna:snoRNA chromosome:GRCh37:22:28628744:28628811:-1 gene:ENSG00000201209 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364339 ncrna:snoRNA chromosome:GRCh37:22:28628744:28628811:-1 gene:ENSG00000201209 gene_biotype:snoRNA transcript_biotype:snoRNA	chr22	 28628744	 28628811	-	ENSG00000201209	ENST00000364339	NA	NA	TTC28	NA	chr22:28618744-28638811	inner
CUST_238_PI429201921	0.9021776	A	0.89904535	A	1.00217346882278	0	lncRNA	182-2_{3001..6000}	TC22000970.hg.1	TCONS_00029362-XLOC_014156 // Rinn lincRNAs // linc-ZNF74-3 chr22:+:20186295-20192440 // chr22 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr22:+:20186295-20192440	NA	Affy_HUMAN_HTA2.0	TCONS_00029362-XLOC_014156	linc-ZNF74-3	chr22	 20186295	 20192440	+	NA	NA	NA	NA	ATPIF1	NA	chr1:28563655-28564616	Unknown
CUST_44196_PI429285431	8.26091	P	7.808065	P	1.36873675110888	0	lncRNA	48853-1_{1..2527}	"gi|209870108|ref|NR_024241.1| Homo sapiens family with sequence similarity 86, member D, pseudogene (FAM86DP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209870108|ref|NR_024241.1| Homo sapiens family with sequence similarity 86, member D, pseudogene (FAM86DP), non-coding RNA"	Chr3	 75470703	 75473229	-	692099	NR_024241.1	NA	NA	NA	"hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40"	NA	inter
CUST_3386_PI429285431	0.9135202	A	1.5999222	A	0.621401659756945	0	lncRNA	3360-1_{1..839}	"transcript_id ""ENST00000413291.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413291.1"" | genecode_v17"	chr9	 32643101	 32643939	-	ENSG00000230516.1	ENST00000413291.1	RP11-555J4.3	RP11-555J4.3-001	TAF1L	NA	chr9:32633101-32635667	inter
CUST_49257_PI429285431	0.9057811	A	0.92324775	A	0.987966035152371	0	lncRNA	53076-1_{1..441}	hg19_lincRNAsTranscripts_TCONS_l2_00022964 range=chr5:75075708-75158886 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022964 range=chr5:75075708-75158886 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 75075708	 75076148	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46572_PI429285431	6.964612	P	6.760515	P	1.15196509243716	0	lncRNA	50756-1_{1..2749}	"gi|295821178|ref|NR_033645.1| Homo sapiens lipase maturation factor 1 (LMF1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|295821178|ref|NR_033645.1| Homo sapiens lipase maturation factor 1 (LMF1), transcript variant 2, non-coding RNA"	Chr16	   903634	   906382	-	64788	NR_033645.1	NA	NA	NA	NA	NA	inter
CUST_7120_PI429285431	1.3101214	A	0.90568215	A	1.32357436050149	0	lncRNA	7057-1_{1..681}	"transcript_id ""ENST00000412163.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000412163.1"" | genecode_v17"	chrX	140713994	140714674	+	ENSG00000223438.1	ENST00000412163.1	RP1-171K16.5	RP1-171K16.5-001	NA	NA	NA	inter
CUST_4270_PI429285431	2.8011756	A	3.8683224	P	0.477261941284531	0	lncRNA	4226-1_{1..528}	"transcript_id ""ENST00000504891.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000504891.1"" | genecode_v17"	chr12	 54475902	 54476429	+	ENSG00000249388.1	ENST00000504891.1	RP11-834C11.6	RP11-834C11.6-001	NA	NA	NA	inter
CUST_711_PI429285431	0.9098771	A	0.9134469	A	0.9975286619912	0	lncRNA	704-1_{1..780}	"transcript_id ""ENST00000585718.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585718.1"" | genecode_v17"	chr2	  6777816	  6778595	-	ENSG00000236172.2	ENST00000585718.1	AC097517.2	AC097517.2-016	NA	NA	NA	inter
LNCA_21_P0006681	0.9175652	A	0.9037414	A	1.00962798164339	0	lncRNA	ENST00000428346	NA	NA	NA	NA	XLOC_008499	NA	ENST00000428346	NA	NA	"BROAD Institute lincRNA (XLOC_008499), lincRNA [TCONS_00017834]"	chr10:67074614-67074673	hs|10q21.3	Agilent_HUMAN_G3V2	ENST00000428346	ENST00000428346	chr10	 67074614	 67074673	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49499_PI429285431	6.3818755	P	5.9648786	P	1.33514543439072	0	lncRNA	53289-1_{1..1707}	hg19_lincRNAsTranscripts_TCONS_l2_00024064 range=chr6:17102352-17131851 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024064 range=chr6:17102352-17131851 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 17102352	 17104058	+	NA	NA	NA	NA	FLJ23152	NA	chr6:17102489-17131603	inner
CUST_24111_PI429285431	0.89645654	A	0.8914839	A	1.00345271834309	0	lncRNA	25662-1_{1..3000}	lnc-AC003682.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC003682.1-1:3	chr19	 58071024	 58074023	-	lnc-AC003682.1-1	lnc-AC003682.1-1:3	ENSG00000105132.8	ZNF550	ZNF550	NA	chr19:58061024-58067725	inter
CUST_34178_PI429285431	2.927126	A	2.4692562	A	1.37351227142624	0	lncRNA	35694-1_{1..960}	n341026|BC039472|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3492|NULL|-1.0254700|-0.1590265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341026|BC039472|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3492|NULL|-1.0254700|-0.1590265	chr11	 46193505	 46194464	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28706_PI429285431	0.89183533	A	1.0668343	A	0.885768151488863	0	lncRNA	30406-1_{1..2390}	n326096|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046508|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046508|-0.5707760|-0.3289102	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326096|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046508|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046508|-0.5707760|-0.3289102	chr10	  4416437	  4418826	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5336_PI429285431	3.0849032	P	3.1462543	P	0.958366178307816	0	lncRNA	5274-1_{1..715}	"transcript_id ""ENST00000554649.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554649.1"" | genecode_v17"	chr15	 95577613	 95578327	-	ENSG00000258433.1	ENST00000554649.1	RP11-255M2.1	RP11-255M2.1-001	NA	NA	NA	inter
CUST_47281_PI429285431	4.9076543	P	5.4926577	P	0.666647767454679	0	lncRNA	51350-1_{1..1743}	"gi|334358901|ref|NR_038337.1| Homo sapiens uncharacterized LOC100505783 (LOC100505783), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|334358901|ref|NR_038337.1| Homo sapiens uncharacterized LOC100505783 (LOC100505783), transcript variant 1, non-coding RNA"	Chr20	 42839726	 42841468	+	100505783	NR_038337.1	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20"	NA	inter
CUST_22605_PI429285431	2.6230521	A	2.725091	A	0.931715306729983	0	lncRNA	24190-1_{1..1922}	lnc-KLF9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLF9-1:1	chr9	 72790671	 72792592	-	lnc-KLF9-1	lnc-KLF9-1:1	ENSG00000204706.6	RP11-195E11.3	MAMDC2	"hg19_refFlat_MAMDC2:range=chr9:72659114-728409485'pad=0,hg19_refFlat_MAMDC2:range=chr9:72659114-728409485'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50chr9:72780671-72800804"	NA	inner
CUST_29608_PI429285431	5.106578	P	5.547816	P	0.736502332811134	0	lncRNA	31369-1_{1..337}	n333145|AF364518|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078424|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078424|1.2874400|-0.0547585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333145|AF364518|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078424|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078424|1.2874400|-0.0547585	chr1	211751384	211751720	-	NA	NA	NA	NA	SLC30A1	NA	chr1:211748381-211752099	inner
CUST_32053_PI429285431	0.9203447	A	0.9174036	A	1.00204069456144	0	lncRNA	33768-1_{1..1555}	n338617|BC036260|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1023|NULL|-1.2513800|-0.3416931	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338617|BC036260|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1023|NULL|-1.2513800|-0.3416931	chr1	247803050	247804604	+	NA	NA	NA	NA	OR6F1	NA	chr1:247875131-247876057	inner
CUST_27291_PI429285431	0.92858666	A	0.9242344	A	1.00302131173798	0	lncRNA	28848-1_{1..414}	n324441|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041665|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041665|-1.2519200|-0.2906381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324441|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041665|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041665|-1.2519200|-0.2906381	chr6	106913133	106913546	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49888_PI429285431	0.9136971	A	0.9052248	A	1.00588982808856	0	lncRNA	53638-4_{9001..12000}	hg19_lincRNAsTranscripts_TCONS_l2_00026700 range=chr7:76684553-76702721 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026700 range=chr7:76684553-76702721 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 76693553	 76696552	-	NA	NA	NA	NA	LOC100505767	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_NSL1:range=chr1:212912886-2129651055'pad=0,hg19_refFlat_NSL1:range=chr1:212912886-2129651055'pad=0 3'pad=0 strand=- repeatMasking=none,-58.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.41;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10chr7:76682095-76689829"	NA	inter
CUST_11939_PI429285431	1.7208174	A	1.5862437	A	1.097768387766	0	lncRNA	13519-1_{1..232}	lnc-CAPN13-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CAPN13-2:1	chr2	 30626809	 30627040	-	lnc-CAPN13-2	lnc-CAPN13-2:1	XLOC_002041	linc-ALK-2	NA	NA	NA	inter
CUST_34487_PI429285431	3.0028152	A	2.8668127	A	1.09885612174779	0	lncRNA	35955-2_{3001..3343}	n341364|AK130536|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3833|NULL|0.3612520|-0.2222985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341364|AK130536|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3833|NULL|0.3612520|-0.2222985	chr7	151565746	151566088	-	NA	NA	NA	NA	PRKAG2	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60chr7:151552746-151574316"	NA	inner
CUST_31223_PI429285431	2.3882315	A	1.7202009	A	1.58890250093944	0	lncRNA	33015-1_{1..3000}	n337672|D86969|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|54|NULL|8.2041100|-0.2955297	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337672|D86969|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|54|NULL|8.2041100|-0.2955297	chrX	 46771867	 46774866	+	NA	NA	NA	NA	PHF16	NA	chrX:46771736-46920641	inner
CUST_26074_PI429285431	4.241915	P	5.1471143	P	0.533958935581045	0	lncRNA	27587-1_{1..781}	lnc-GABPA-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GABPA-3:1	chr21	 27843070	 27843850	+	lnc-GABPA-3	lnc-GABPA-3:1	ENSG00000232692.1	AP001596.6	CYYR1	NA	chr21:27838528-27853421	inner
CUST_24301_PI429285431	7.6662726	P	7.846721	P	0.882428688478316	0	lncRNA	25852-1_{1..377}	lnc-STT3B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STT3B-1:2	chr3	 31746220	 31746596	+	lnc-STT3B-1	lnc-STT3B-1:2	ENSG00000232490.2	OSBPL10-AS1	OSBPL10	NA	chr3:31736220-31756462	inner
CUST_27280_PI429285431	12.477335	P	12.485096	P	0.994634928412328	0	lncRNA	28836-1_{1..1785}	n324429|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317438|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317438|-0.8509820|-0.4021360	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324429|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317438|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317438|-0.8509820|-0.4021360	chr6	109179549	109181333	+	NA	NA	NA	NA	ARMC2	NA	chr6:109169549-109206352	inner
CUST_39068_PI429285431	4.7645245	P	5.354215	P	0.664485443191088	0	lncRNA	40043-1_{1..2392}	n385540|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004acz.1||11.2324000|-0.1827304	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385540|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004acz.1||11.2324000|-0.1827304	chr9	 43685062	 43687453	+	NA	NA	NA	NA	LOC100653009	NA	chr9:43714701-43900529	inner
LNCA_21_P0006143	0.9283881	A	1.2707522	A	0.788747755604634	0	lncRNA	ENST00000433838	NA	NA	NA	NA	XLOC_007342	NA	ENST00000433838	NA	NA	"BROAD Institute lincRNA (XLOC_007342), lincRNA [TCONS_00015971]"	chr9:35930033-35930092	hs|9p13.3	Agilent_HUMAN_G3V2	ENST00000433838	ENST00000433838	chr9	 35930033	 35930092	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34023_PI429285431	0.91846424	A	0.92391026	A	0.996232222545044	0	lncRNA	35556-1_{1..1180}	n340840|AY309077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3304|NULL|-1.2391200|-0.4223463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340840|AY309077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3304|NULL|-1.2391200|-0.4223463	chr6	 10024110	 10025289	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9290_PI429285431	1.7766125	A	1.7462186	A	1.02129093139599	0	lncRNA	10796-1_{1..453}	lnc-BOD1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BOD1-1:7	chr5	173141829	173142281	-	lnc-BOD1-1	lnc-BOD1-1:7	XLOC_005087	linc-BOD1-3	NA	NA	NA	inter
CUST_27238_PI429285431	0.92640287	A	1.1214415	A	0.873549505201249	0	lncRNA	28787-1_{1..216}	n324380|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042346|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042346|-1.1929400|-0.4033474	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324380|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042346|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042346|-1.1929400|-0.4033474	chr6	135622826	135623041	+	NA	NA	NA	NA	AHI1	NA	chr6:135612826-135633764	inner
CUST_27777_PI429285431	0.920035	A	0.9239192	A	0.997311298770489	0	lncRNA	29362-1_{1..543}	n324997|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000276668|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000276668|-1.1224600|-0.3210059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324997|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000276668|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000276668|-1.1224600|-0.3210059	chr20	 35681113	 35681655	-	NA	NA	NA	NA	RBL1	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-62.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20chr20:35671113-35694935"	NA	inner
CUST_29105_PI429285431	1.7917683	A	1.3472037	A	1.3609033389486	0	lncRNA	30838-1_{1..1824}	n326603|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000022925|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000022925|1.5442900|-0.2733813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326603|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000022925|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000022925|1.5442900|-0.2733813	chr1	 57061939	 57063762	-	NA	NA	NA	NA	PRKAA2	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30chr1:57051939-57075181"	NA	inter
CUST_29024_PI429285431	3.9453895	P	4.079227	P	0.911403932129095	0	lncRNA	30753-1_{1..1440}	n326514|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030152|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030152|-1.2890200|-0.3860130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326514|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030152|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030152|-1.2890200|-0.3860130	chr1	 95748483	 95749922	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5599_PI429285431	1.1609138	A	1.2670887	A	0.929048037590326	0	lncRNA	5528-1_{1..515}	"transcript_id ""ENST00000565929.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565929.1"" | genecode_v17"	chr16	 67583122	 67583636	-	ENSG00000261386.2	ENST00000565929.1	CTD-2012K14.6	CTD-2012K14.6-001	FAM65A	NA	chr16:67573122-67580691	inter
CUST_26688_PI429285431	5.009518	P	4.4476395	P	1.47619007958321	0	lncRNA	28196-1_{1..258}	n676|AF040097|FMR1PbindingRNA|Homosapiens|FMR1PbindingRNA|NONCODEv2.0|n676|NULL|-1.1808000|-0.3532742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n676|AF040097|FMR1PbindingRNA|Homosapiens|FMR1PbindingRNA|NONCODEv2.0|n676|NULL|-1.1808000|-0.3532742	chr1	 13921082	 13921339	-	NA	NA	NA	NA	PDPN	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr1:13911082-13931501"	NA	inner
CUST_24785_PI429285431	0.9082523	A	1.1702145	A	0.833952893907988	0	lncRNA	26328-1_{1..594}	lnc-RARS-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RARS-4:1	chr5	168463136	168463729	+	lnc-RARS-4	lnc-RARS-4:1	ENSG00000248222.1	CTB-174D11.1	SLIT3	NA	chr5:168453136-168473413	inner
CUST_26869_PI429285431	1.4749643	A	1.6837002	A	0.865295077151667	0	lncRNA	28386-1_{1..743}	n323944|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054944|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054944|-0.8759050|-0.1333616	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323944|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054944|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054944|-0.8759050|-0.1333616	chr9	136325597	136326339	-	NA	NA	NA	NA	ADAMTS13	NA	chr9:136315597-136324508	inner
CUST_2663_PI429285431	3.3804636	P	4.0520725	P	0.627806164461444	0	lncRNA	2649-1_{1..406}	"transcript_id ""ENST00000432506.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432506.1"" | genecode_v17"	chr6	147981873	147982278	+	ENSG00000227681.1	ENST00000432506.1	RP11-307P5.1	RP11-307P5.1-001	NA	NA	NA	inter
CUST_8854_PI429285431	0.91901773	A	0.91016793	A	1.00615306673808	0	lncRNA	10393-1_{1..594}	lnc-ENDOD1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ENDOD1-1:4	chr11	 94890792	 94891385	+	lnc-ENDOD1-1	lnc-ENDOD1-1:4	ENSG00000245552	RP11-712B9.2	NA	NA	NA	inter
CUST_14041_PI429285431	5.4758363	P	5.7266364	P	0.840430194275726	0	lncRNA	15688-1_{1..262}	lnc-EDEM3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EDEM3-2:1	chr1	184622320	184622581	-	lnc-EDEM3-2	lnc-EDEM3-2:1	XLOC_001124	linc-GLT25D2-2	NA	NA	NA	inter
CUST_979_PI429285431	0.9258954	A	0.9254422	A	1.00031418364758	0	lncRNA	968-1_{1..549}	"transcript_id ""ENST00000435291.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435291.1"" | genecode_v17"	chr2	103603781	103604329	+	ENSG00000227680.1	ENST00000435291.1	AC108051.2	AC108051.2-001	NA	NA	NA	inter
CUST_2562_PI429285431	0.90187657	A	0.9025551	A	0.999529789427232	0	lncRNA	2550-1_{1..2632}	"transcript_id ""ENST00000430931.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430931.1"" | genecode_v17"	chr6	 79519432	 79522063	-	ENSG00000229495.1	ENST00000430931.1	RP11-173D14.3	RP11-173D14.3-001	NA	NA	NA	inter
CUST_32659_PI429285431	1.1588916	A	0.91245514	A	1.18627332960812	0	lncRNA	34310-1_{1..431}	n339284|AF086009|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1716|NULL|-1.1689300|-0.3508161	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339284|AF086009|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1716|NULL|-1.1689300|-0.3508161	chr16	 73327764	 73328194	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46360_PI429285431	6.414267	P	6.6950126	P	0.823165486719798	0	lncRNA	50582-1_{1..837}	"gi|310123137|ref|XR_110230.1| PREDICTED: Homo sapiens uncharacterized LOC100506718 (LOC100506718), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123137|ref|XR_110230.1| PREDICTED: Homo sapiens uncharacterized LOC100506718 (LOC100506718), misc_RNA"	Chr14	 86024146	 86024982	+	100506718	XR_110230.2	NA	NA	NA	NA	NA	inter
CUST_25808_PI429285431	3.0133033	A	2.347201	A	1.58678019932139	0	lncRNA	27329-1_{1..567}	lnc-ZDHHC5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZDHHC5-1:1	chr11	 57417771	 57418337	+	lnc-ZDHHC5-1	lnc-ZDHHC5-1:1	ENSG00000254602.1	AP000662.4	CLP1	NA	chr11:57425216-57428182	inter
CUST_35035_PI429285431	1.0554439	A	1.3419987	A	0.819857567734418	0	lncRNA	36447-1_{1..1386}	n341977|BC031963|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4458|NULL|-0.7381800|-0.2790145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341977|BC031963|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4458|NULL|-0.7381800|-0.2790145	chr12	 82347500	 82348885	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005950	7.5760393	P	7.8001637	P	0.856114460746088	0	lncRNA	TCONS_00015357	NA	NA	NA	NA	XLOC_006924	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006924), lincRNA [TCONS_00015357]"	chr8:129008906-129008965	hs|8q24.21	Agilent_HUMAN_G3V2	TCONS_00015357	TCONS_00015357	chr8	129008906	129008965	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19180_PI429285431	0.90788275	A	1.4248415	A	0.698843467196757	0	lncRNA	20849-1_{1..633}	lnc-STK39-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STK39-2:2	chr2	168726250	168726882	-	lnc-STK39-2	lnc-STK39-2:2	ENSG00000235335.2	AC016723.4	B3GALT1	"hg19_refFlat_B3GALT1:range=chr2:168725550-1687265305'pad=0,hg19_refFlat_B3GALT1:range=chr2:168725550-1687265305'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50chr2:168716250-168727366"	NA	inner
CUST_52206_PI429285431	2.9105623	A	3.645982	P	0.60064326388708	0	lncRNA	55723-1_{1..732}	hg19_lincRNAsTranscripts_TCONS_l2_00018071 range=chr22:42546707-42548179 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018071 range=chr22:42546707-42548179 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 42546707	 42547438	-	NA	NA	NA	NA	TCF20	NA	chr22:42556019-42558179	inter
LNCA_21_P0007464	2.5019603	A	3.0871353	P	0.666568478380747	0	lncRNA	AF113016	NA	AF113016	NA	NA	XLOC_009474	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009474), lincRNA [TCONS_00020083]"	chr11:65269831-65269772	hs|11q13.1	Agilent_HUMAN_G3V2	AF113016	AF113016	chr11	 65269772	 65269831	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11521_PI429285431	5.788942	P	5.661394	P	1.09243542270245	0	lncRNA	13091-1_{1..536}	lnc-MAPK8IP2-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAPK8IP2-1:8	chr22	 51025699	 51026234	+	lnc-MAPK8IP2-1	lnc-MAPK8IP2-1:8	XLOC_014288	linc-MAPK8IP2	CHKB	NA	chr22:51017387-51021428	inter
CUST_48744_PI429285431	1.660458	A	1.0398555	A	1.53751714694893	0	lncRNA	52582-1_{1..2343}	hg19_lincRNAsTranscripts_TCONS_l2_00013997 range=chr2:132395383-132402697 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013997 range=chr2:132395383-132402697 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	132395383	132397725	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_899_PI429285431	0.925156	A	1.4194311	A	0.709918295743639	0	lncRNA	888-1_{1..572}	"transcript_id ""ENST00000436433.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436433.1"" | genecode_v17"	chr2	 64713487	 64714058	+	ENSG00000223863.1	ENST00000436433.1	AC008074.4	AC008074.4-001	NA	NA	NA	inter
CUST_38254_PI429285431	12.9425335	P	12.810061	P	1.09617071677493	0	lncRNA	39312-1_{1..382}	n381779|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pry.1||-0.7763190|-0.1339117	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n381779|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pry.1||-0.7763190|-0.1339117	chr11	117886486	117886867	-	NA	NA	NA	NA	TMPRSS4	NA	chr11:117947727-117967508	inner
CUST_90_PI429285431	0.9721798	A	1.3210338	A	0.785207577257997	0	lncRNA	83-1_{1..3000}	"transcript_id ""ENST00000536898.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000536898.1"" | genecode_v17"	chr19	 35896509	 35899508	+	ENSG00000205786.4	ENST00000536898.1	AC002511.1	AC002511.1-002	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_10051_PI429285431	0.91142637	A	0.90456426	A	1.00476778207417	0	lncRNA	11576-1_{1..221}	lnc-RP11-327F22.5.1-7:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-327F22.5.1-7:9	chr16	 51847292	 51847512	+	lnc-RP11-327F22.5.1-7	lnc-RP11-327F22.5.1-7:9	XLOC_011722	linc-CHD9-6	NA	NA	NA	inter
CUST_29303_PI429285431	6.6951523	P	7.1102467	P	0.749970420152496	0	lncRNA	31054-1_{1..357}	n332474|EF587245|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000469200|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000469200|1.8962600|-0.0441882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332474|EF587245|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000469200|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000469200|1.8962600|-0.0441882	chr16	 28493923	 28494279	-	NA	NA	NA	NA	APOBR	NA	chr16:28505993-28509073	inner
CUST_10073_PI429285431	6.21123	P	6.118215	P	1.06659687040332	0	lncRNA	11598-1_{1..239}	lnc-CLLU1.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLLU1.1-1:4	chr12	 92860917	 92861155	+	lnc-CLLU1.1-1	lnc-CLLU1.1-1:4	XLOC_009835	linc-C12orf74-2	NA	NA	NA	inter
CUST_3185_PI429285431	3.265337	P	3.5548122	P	0.818199635708651	0	lncRNA	3165-1_{1..490}	"transcript_id ""ENST00000467082.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000467082.2"" | genecode_v17"	chr8	 76079939	 76080428	-	ENSG00000253712.1	ENST00000467082.2	RP11-697M17.2	RP11-697M17.2-001	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50"	NA	inter
CUST_9265_PI429285431	1.3599784	A	0.9114949	A	1.36460508744771	0	lncRNA	10771-1_{1..585}	lnc-FAM84B-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM84B-7:1	chr8	126963430	126964014	-	lnc-FAM84B-7	lnc-FAM84B-7:1	ENSG00000245164	RP11-622O11.2	NA	NA	NA	inter
CUST_17408_PI429285431	0.97016555	A	0.9897532	A	0.98651462906314	0	lncRNA	19132-1_{1..785}	lnc-GATA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GATA3-1:1	chr10	  8094398	  8095182	+	lnc-GATA3-1	lnc-GATA3-1:1	XLOC_008381	linc-GATA3-1	GATA3	NA	chr10:8096667-8104726	inter
CUST_42404_PI429285431	1.9019728	A	0.926445	A	1.96636044488185	0	lncRNA	45102-1_{1..70}	ENST00000365465 ncrna:snoRNA chromosome:GRCh37:12:110934157:110934226:-1 gene:ENSG00000202335 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365465 ncrna:snoRNA chromosome:GRCh37:12:110934157:110934226:-1 gene:ENSG00000202335 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	110934157	110934226	-	ENSG00000202335	ENST00000365465	NA	NA	C12orf24	NA	chr12:110924157-110928192	inner
CUST_23017_PI429285431	0.90774536	A	1.9842614	A	0.474172519672074	0	lncRNA	24589-1_{1..2368}	lnc-AC021860.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AC021860.1-2:3	chr4	 38665797	 38668164	-	lnc-AC021860.1-2	lnc-AC021860.1-2:3	ENSG00000231160.3	RP11-617D20.1	KLF3	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-56.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80chr4:38665790-38676249"	NA	inner
CUST_256_PI429285431	0.9179182	A	0.9246545	A	0.995341636636412	0	lncRNA	248-1_{1..480}	"transcript_id ""ENST00000596404.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596404.1"" | genecode_v17"	chr1	 61714668	 61715147	-	ENSG00000237853.2	ENST00000596404.1	RP5-833A20.1	RP5-833A20.1-003	NFIA	NA	chr1:61704668-61729182	inner
CUST_12980_PI429285431	0.9145788	A	0.9191691	A	0.996823302910577	0	lncRNA	14606-1_{1..1141}	lnc-TTLL7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTLL7-1:1	chr1	 84465993	 84467133	-	lnc-TTLL7-1	lnc-TTLL7-1:1	XLOC_000888	linc-TTLL7-1	TTLL7	NA	chr1:84455993-84464833	inter
CUST_2594_PI429285431	0.90482813	A	0.9599845	A	0.962490115623101	0	lncRNA	2582-1_{1..419}	"transcript_id ""ENST00000424162.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424162.1"" | genecode_v17"	chr6	107143410	107143828	+	ENSG00000229654.1	ENST00000424162.1	RP1-60O19.2	RP1-60O19.2-001	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90"	NA	inter
CUST_6960_PI429285431	5.6104145	P	5.6002903	P	1.00704224146359	0	lncRNA	6908-1_{1..473}	"transcript_id ""ENST00000430468.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430468.1"" | genecode_v17"	chr22	 27539439	 27539911	+	ENSG00000231405.1	ENST00000430468.1	CTA-992D9.7	CTA-992D9.7-001	NA	NA	NA	inter
CUST_1989_PI429285431	0.92930365	A	0.91377234	A	1.01082364006325	0	lncRNA	1980-1_{1..428}	"transcript_id ""ENST00000510203.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510203.1"" | genecode_v17"	chr4	177787768	177788195	-	ENSG00000249458.1	ENST00000510203.1	RP11-624A4.1	RP11-624A4.1-001	NA	NA	NA	inter
CUST_5384_PI429285431	3.8348498	P	4.1487794	P	0.804447625066622	0	lncRNA	5318-1_{1..813}	"transcript_id ""ENST00000565069.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565069.1"" | genecode_v17"	chr16	  1026521	  1027333	-	ENSG00000260807.2	ENST00000565069.1	RP11-161M6.2	RP11-161M6.2-005	LMF1	NA	chr16:1016521-1031318	inter
CUST_37091_PI429285431	0.9545701	A	0.9140041	A	1.02851725674534	0	lncRNA	38217-1_{1..2701}	n345535|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1084|NULL|-1.2932300|-0.3605064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345535|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1084|NULL|-1.2932300|-0.3605064	chr2	 75513907	 75516607	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38492_PI429285431	0.95196533	A	1.437785	A	0.714091242264185	0	lncRNA	39508-1_{1..1650}	n383023|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fjt.1||-1.0515300|-0.1778492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383023|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fjt.1||-1.0515300|-0.1778492	chr16	 87117167	 87118816	-	NA	NA	NA	NA	C16orf95	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40chr16:87336404-87346368"	NA	inter
CUST_40051_PI429285431	0.90307564	A	1.5687296	A	0.630402883983151	0	lncRNA	40904-1_{1..1805}	n407255|NR_026717_5|lncRNA|Homosapiens||RefGeneNoncode|NR_026717_5||-0.8813690|-0.2542976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407255|NR_026717_5|lncRNA|Homosapiens||RefGeneNoncode|NR_026717_5||-0.8813690|-0.2542976	chr6	  3318795	  3320599	+	NA	NA	NA	NA	SLC22A23	NA	chr6:3308795-3339068	inner
CUST_5733_PI429285431	0.9160619	A	0.920569	A	0.996880791214024	0	lncRNA	5656-1_{1..485}	"transcript_id ""ENST00000440522.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440522.1"" | genecode_v17"	chr17	 13202501	 13202985	-	ENSG00000234634.1	ENST00000440522.1	AC003664.1	AC003664.1-001	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10"	NA	inter
CUST_41263_PI429285431	3.7302363	P	2.9983606	A	1.66079695075059	0	lncRNA	42227-1_{1..81}	ENST00000411202 ncrna:miRNA chromosome:GRCh37:11:33376011:33376091:1 gene:ENSG00000223134 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000411202 ncrna:miRNA chromosome:GRCh37:11:33376011:33376091:1 gene:ENSG00000223134 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 33376011	 33376091	+	ENSG00000223134	ENST00000411202	NA	NA	HIPK3	NA	chr11:33366011-33375939	inter
CUST_12187_PI429285431	1.0509017	A	1.6856384	A	0.644058348318516	0	lncRNA	13787-1_{1..781}	lnc-FRG1-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRG1-4:5	chr4	190497379	190498159	+	lnc-FRG1-4	lnc-FRG1-4:5	XLOC_003840	linc-FRG1-4	NA	NA	NA	inter
CUST_3084_PI429285431	0.919264	A	0.9116541	A	1.00528871687782	0	lncRNA	3063-1_{1..187}	"transcript_id ""ENST00000524098.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524098.1"" | genecode_v17"	chr8	 39961688	 39961874	+	ENSG00000253381.1	ENST00000524098.1	RP11-359E19.1	RP11-359E19.1-001	NA	NA	NA	inter
LNCA_21_P0011864	0.92976224	A	0.91812783	A	1.00809696301383	0	lncRNA	TCONS_l2_00014029	NA	NA	NA	NA	XLOC_l2_007595	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007595), lincRNA [TCONS_l2_00014029]"	chr2:151432587-151432646	hs|2q23.3	Agilent_HUMAN_G3V2	TCONS_l2_00014029	TCONS_l2_00014029	chr2	151432587	151432646	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41118_PI429285431	2.7232995	A	2.2912061	A	1.3491898779931	0	lncRNA	41880-1_{1..69}	ENST00000582929 ncrna:miRNA chromosome:GRCh37:19:42637597:42637665:-1 gene:ENSG00000266226 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582929 ncrna:miRNA chromosome:GRCh37:19:42637597:42637665:-1 gene:ENSG00000266226 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 42637597	 42637665	-	ENSG00000266226	ENST00000582929	NA	NA	POU2F2	NA	chr19:42627597-42636625	inter
LNCA_21_P0008196	0.9285824	A	0.9161408	A	1.00866115256696	0	lncRNA	TCONS_00022079	NA	NA	NA	NA	XLOC_010681	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010681), lincRNA [TCONS_00022079]"	chr13:86205931-86203773	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00022079	TCONS_00022079	chr13	 86203773	 86205931	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42241_PI429285431	11.842625	P	12.360236	P	0.698527587808089	0	lncRNA	44376-1_{1..73}	ENST00000387400 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:5657:5729:-1 gene:ENSG00000210135 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000387400 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:5657:5729:-1 gene:ENSG00000210135 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	chrMT	     5657	     5729	-	ENSG00000210135	ENST00000387400	NA	NA	NA	NA	NA	Unknown
CUST_2657_PI429285431	4.424123	P	4.1779327	P	1.18607093885777	0	lncRNA	2643-1_{1..1649}	"transcript_id ""ENST00000603994.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603994.1"" | genecode_v17"	chr6	146056706	146058354	+	ENSG00000270638.1	ENST00000603994.1	RP3-466P17.1	RP3-466P17.1-001	EPM2A	NA	chr6:146046706-146056991	inter
CUST_22206_PI429285431	4.0797167	P	3.9175076	P	1.11899927376518	0	lncRNA	23805-2_{3001..3523}	lnc-AC092117.1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC092117.1-1:6	chr16	  2790481	  2791003	-	lnc-AC092117.1-1	lnc-AC092117.1-1:6	ENSG00000205913.2	CTD-2270P14.3	NA	NA	NA	inter
CUST_26245_PI429285431	0.9085808	A	1.2040571	A	0.81480328394574	0	lncRNA	27752-1_{1..750}	lnc-SGSH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SGSH-1:1	chr17	 78179132	 78179881	-	lnc-SGSH-1	lnc-SGSH-1:1	ENSG00000262580.1	RP11-334C17.5	CARD14	"hg19_refFlat_CARD14:range=chr17:78155238-781821445'pad=0,hg19_refFlat_CARD14:range=chr17:78155238-781821445'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.60chr17:78169132-78182851"	NA	inner
CUST_43127_PI429285431	3.885866	P	4.151632	P	0.831756995458514	0	lncRNA	47941-1_{1..536}	ENST00000574969 havana:lincRNA chromosome:GRCh37:HSCHR20_1_CTG1:17853225:17853851:1 gene:ENSG00000262640 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>ENST00000574969 havana:lincRNA chromosome:GRCh37:HSCHR20_1_CTG1:17853225:17853851:1 gene:ENSG00000262640 gene_biotype:lincRNA transcript_biotype:lincRNA	chrHSCHR20_1_CTG1	 17853225	 17853760	+	ENSG00000262640	ENST00000574969	NA	NA	NA	NA	NA	Unknown
CUST_16516_PI429285431	5.085199	P	5.424852	P	0.790231357090519	0	lncRNA	18217-1_{1..1730}	lnc-SLC44A3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC44A3-1:4	chr1	 95428535	 95430264	+	lnc-SLC44A3-1	lnc-SLC44A3-1:4	XLOC_000304	linc-TMEM56-3	NA	NA	NA	inter
CUST_17451_PI429285431	6.732916	P	6.849137	P	0.92260115268476	0	lncRNA	19174-1_{1..465}	lnc-EGLN1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EGLN1-1:2	chr1	231664166	231664630	-	lnc-EGLN1-1	lnc-EGLN1-1:2	XLOC_001257	linc-EGLN1-2	TSNAX	NA	chr1:231664399-231674302	inter
CUST_15752_PI429285431	16.561195	P	16.568123	P	0.995209388094599	0	lncRNA	17440-1_{1..1225}	lnc-ELFN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELFN1-1:1	chr7	  1682027	  1683251	+	lnc-ELFN1-1	lnc-ELFN1-1:1	XLOC_005965	linc-ELFN1	NA	NA	NA	inter
CUST_36044_PI429285431	0.8964194	A	0.89242476	A	1.0027727103239	0	lncRNA	37362-7_{18001..18176}	n344643|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_191|NULL|-1.3262900|-0.2857767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344643|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_191|NULL|-1.3262900|-0.2857767	chr2	216493716	216493891	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_TBX1:range=chr22:19747167-197543905'pad=0,hg19_refFlat_TBX1:range=chr22:19747167-197543905'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40"	NA	inter
CUST_350_PI429285431	0.9179916	A	0.9191289	A	0.999211994351202	0	lncRNA	343-1_{1..331}	"transcript_id ""ENST00000429608.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429608.1"" | genecode_v17"	chr1	106623783	106624113	+	ENSG00000237480.1	ENST00000429608.1	RP5-947P14.1	RP5-947P14.1-002	NA	"hg19_refFlat_TJP3:range=chr19:3721891-37506825'pad=0,hg19_refFlat_TJP3:range=chr19:3721891-37506825'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_TJP3:range=chr19:3728431-37506825'pad=0,hg19_refFlat_TJP3:range=chr19:3728431-37506825'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60"	NA	inter
CUST_42620_PI429285431	1.0238345	A	0.9159291	A	1.077662478541	0	lncRNA	45485-1_{1..75}	ENST00000458800 ncrna:snoRNA chromosome:GRCh37:8:142457575:142457649:1 gene:ENSG00000238854 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000458800 ncrna:snoRNA chromosome:GRCh37:8:142457575:142457649:1 gene:ENSG00000238854 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	142457575	142457649	+	ENSG00000238854	ENST00000458800	NA	NA	FLJ43860	NA	chr8:142447575-142467649	inner
CUST_10897_PI429285431	9.868506	P	10.44465	P	0.67075415898477	0	lncRNA	12439-1_{1..243}	lnc-DHX37-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-3:5	chr12	126467750	126467992	-	lnc-DHX37-3	lnc-DHX37-3:5	XLOC_010238	linc-DHX37-20	NA	NA	NA	inter
CUST_18053_PI429285431	3.2639425	P	3.5174766	P	0.838839033093525	0	lncRNA	19788-1_{1..401}	lnc-RXFP4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RXFP4-1:1	chr1	155971299	155971699	+	lnc-RXFP4-1	lnc-RXFP4-1:1	XLOC_000421	linc-ROBLD3	SSR2	NA	chr1:155978839-155981578	inter
CUST_6019_PI429285431	2.3979194	A	2.0402296	A	1.28137238120998	0	lncRNA	5945-1_{1..360}	"transcript_id ""ENST00000566971.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566971.2"" | genecode_v17"	chr17	 80338986	 80339345	-	ENSG00000260011.2	ENST00000566971.2	RP13-20L14.1	RP13-20L14.1-001	C17orf101	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-11.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60chr17:80347086-80350566"	NA	inter
CUST_29825_PI429285431	0.90861857	A	0.9099033	A	0.999109889406388	0	lncRNA	31588-1_{1..324}	n333546|D16316|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000100580|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000100580|0.6967230|-0.1637801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333546|D16316|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000100580|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000100580|0.6967230|-0.1637801	chr2	112765947	112766270	+	NA	NA	NA	NA	MERTK	NA	chr2:112755947-112786945	inner
CUST_47744_PI429285431	1.6393316	A	1.1275246	A	1.42583496010279	0	lncRNA	51692-1_{1..3000}	"gi|385137106|ref|NR_047644.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 74, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137106|ref|NR_047644.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 74, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047644.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0006446	0.91821086	A	0.903282	A	1.01040162185884	0	lncRNA	ENST00000456037	NA	NA	NA	NA	XLOC_008136	NA	ENST00000456037	NA	NA	"BROAD Institute lincRNA (XLOC_008136), lincRNA [TCONS_00017049]"	chrX:28604486-28604427	hs|Xp21.3	Agilent_HUMAN_G3V2	ENST00000456037	ENST00000456037	chrX	 28604427	 28604486	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35190_PI429285431	0.9146567	A	0.9202146	A	0.996154968422553	0	lncRNA	36591-1_{1..1711}	n342171|BC039091|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4658|NULL|-1.0736600|-0.1893245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342171|BC039091|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4658|NULL|-1.0736600|-0.1893245	chr6	164505054	164506764	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1833_PI429285431	3.2321439	P	3.4139085	P	0.881623997979262	0	lncRNA	1822-1_{1..472}	"transcript_id ""ENST00000506148.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506148.1"" | genecode_v17"	chr4	105828514	105828985	+	ENSG00000248373.1	ENST00000506148.1	RP11-556I14.1	RP11-556I14.1-001	NA	NA	NA	inter
LNCA_21_P0002938	0.9170355	A	0.90234935	A	1.01023165250046	0	lncRNA	TCONS_00005966	NA	NA	NA	NA	XLOC_002597	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002597), lincRNA [TCONS_00005966]"	chr3:23643600-23643659	hs|3p24.3	Agilent_HUMAN_G3V2	TCONS_00005966	TCONS_00005966	chr3	 23643600	 23643659	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33559_PI429285431	3.4907503	P	3.513533	P	0.98433227186406	0	lncRNA	35126-1_{1..3000}	n340308|BX648790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2769|NULL|-0.0507015|-0.2925586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340308|BX648790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2769|NULL|-0.0507015|-0.2925586	chr5	  4520769	  4523768	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_362_PI429201921	1.4258076	A	0.9146567	A	1.42518667504962	0	lncRNA	232-3_{6001..8801}	TC04002705.hg.1	 TCONS_l2_00021957-XLOC_l2_011244 // Broad TUCP // linc-IL21 chr4:-:123651343-123653613 // chr4 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00021277-XLOC_l2_011244 // Broad TUCP // linc-IL21 chr4:-:123644828-123653566 // chr4 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00021278-XLOC_l2_011244 // Broad TUCP // linc-IL21 chr4:-:123644828-123653630 // chr4 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00021279-XLOC_l2_011244 // Broad TUCP // linc-IL21 chr4:-:123652770-123653534 // chr4 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr4:-:123644828-123653566	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00021277-XLOC_l2_011244	linc-IL21	chr4	123644828	123653566	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51990_PI429285431	2.132757	A	2.5614882	A	0.742914865820138	0	lncRNA	55526-1_{1..669}	hg19_lincRNAsTranscripts_TCONS_l2_00017187 range=chr21:29803705-30144437 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017187 range=chr21:29803705-30144437 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 29803705	 29804373	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35122_PI429285431	0.9041635	A	0.90405023	A	1.00007851586335	0	lncRNA	36526-2_{3001..6000}	n342089|AL833558|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4571|NULL|-0.9392120|-0.4404287	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342089|AL833558|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4571|NULL|-0.9392120|-0.4404287	chr6	 96659044	 96662043	+	NA	NA	NA	NA	FUT9	NA	chr6:96646044-96663488	inner
CUST_6521_PI429285431	5.3245945	P	5.4275713	P	0.931109792900001	0	lncRNA	6463-1_{1..596}	"transcript_id ""ENST00000598215.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598215.1"" | genecode_v17"	chr19	 41961934	 41962529	-	ENSG00000267107.2	ENST00000598215.1	AC011526.1	AC011526.1-004	NA	NA	NA	inter
CUST_3124_PI429285431	1.4117475	A	0.90854263	A	1.4173586543229	0	lncRNA	3103-1_{1..780}	"transcript_id ""ENST00000522281.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522281.1"" | genecode_v17"	chr8	 58802135	 58802914	-	ENSG00000253376.1	ENST00000522281.1	RP11-44D19.1	RP11-44D19.1-001	NA	NA	NA	inter
CUST_212_PI429285431	0.90648353	A	0.89227206	A	1.00989931762265	0	lncRNA	202-1_{1..790}	"transcript_id ""ENST00000452971.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452971.1"" | genecode_v17"	chr1	 38940868	 38941657	+	ENSG00000238063.1	ENST00000452971.1	RP11-329N22.1	RP11-329N22.1-001	NA	NA	NA	inter
CUST_29778_PI429285431	6.4049253	P	6.755169	P	0.784451577169131	0	lncRNA	31541-1_{1..508}	n333475|BC027902|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091402|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091402|1.3415300|-0.0359499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333475|BC027902|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091402|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091402|1.3415300|-0.0359499	chr19	 33792922	 33793429	-	NA	NA	NA	NA	CEBPA	NA	chr19:33790840-33793430	inner
LNCA_21_P0004473	0.9166919	A	0.9025452	A	1.00985397906624	0	lncRNA	TCONS_00010562	NA	NA	NA	NA	XLOC_005088	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005088), lincRNA [TCONS_00010562]"	chr5:173213653-173213594	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_00010562	TCONS_00010562	chr5	173213594	173213653	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13085_PI429285431	4.119788	P	4.008645	P	1.0800836124655	0	lncRNA	14712-1_{1..1454}	lnc-C5orf38-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf38-4:1	chr5	  3041841	  3043294	+	lnc-C5orf38-4	lnc-C5orf38-4:1	XLOC_004258	linc-IRX1-6	NA	NA	NA	inter
LNCA_21_P0012272	3.4015121	P	4.0248165	P	0.649182313339459	0	lncRNA	TCONS_l2_00017835	NA	NA	NA	NA	XLOC_l2_009439	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009439), lincRNA [TCONS_l2_00017835]"	chr22:51110508-51110567	hs|22q13.33	Agilent_HUMAN_G3V2	TCONS_l2_00017835	TCONS_l2_00017835	chr22	 51110508	 51110567	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38202_PI429285431	2.2187088	A	1.5090445	A	1.63542352694091	0	lncRNA	39270-1_{1..2743}	n381552|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kyd.1||-1.1088600|-0.2940413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381552|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kyd.1||-1.1088600|-0.2940413	chr10	106061961	106064703	+	NA	NA	NA	NA	GSTO2	NA	chr10:106051961-106059176	inter
CUST_51332_PI429285431	1.1347698	A	1.8168503	A	0.62326581896419	0	lncRNA	54934-1_{1..1398}	hg19_lincRNAsTranscripts_TCONS_l2_00009132 range=chr15:62488170-62489733 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009132 range=chr15:62488170-62489733 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 62488170	 62489567	-	NA	NA	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10"	NA	inter
CUST_18938_PI429285431	0.9092191	A	0.9120384	A	0.998047718339637	0	lncRNA	20629-1_{1..1253}	lnc-NKX2-2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NKX2-2-1:1	chr20	 21683960	 21685212	-	lnc-NKX2-2-1	lnc-NKX2-2-1:1	ENSG00000223871	AL035562.1	PAX1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50chr20:21686297-21694223"	NA	inter
CUST_48518_PI429285431	1.1015465	A	1.4751029	A	0.771877387973197	0	lncRNA	52371-1_{1..1217}	hg19_lincRNAsTranscripts_TCONS_l2_00013440 range=chr2:3751407-3891877 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013440 range=chr2:3751407-3891877 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	  3751407	  3752623	+	NA	NA	NA	NA	DCDC2C	NA	chr2:3750316-3818443	inter
CUST_10822_PI429285431	0.89877367	A	1.0888034	A	0.876587657055169	0	lncRNA	12357-1_{1..461}	lnc-EIF4E-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF4E-1:1	chr4	 99708176	 99708636	-	lnc-EIF4E-1	lnc-EIF4E-1:1	XLOC_004023	linc-TSPAN5-2	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50"	NA	inter
CUST_19742_PI429285431	0.90107703	A	0.93101543	A	0.979462117636674	0	lncRNA	21400-1_{1..1364}	lnc-TOMM7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-TOMM7-1:1	chr7	 22767187	 22768550	-	lnc-TOMM7-1	lnc-TOMM7-1:1	ENSG00000179428.2	AC073072.5	IL6	"hg19_refFlat_IL6:range=chr7:22766882-227711925'pad=0,hg19_refFlat_IL6:range=chr7:22766882-227711925'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70chr7:22766766-22771621"	NA	inner
CUST_36779_PI429285431	0.8957254	A	0.8915494	A	1.00289877597533	0	lncRNA	37951-1_{1..1573}	n345258|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_807|NULL|-1.3594300|-0.4161474	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345258|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_807|NULL|-1.3594300|-0.4161474	chr14	 53966411	 53967983	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20576_PI429285431	0.8817372	A	2.7946143	A	0.265562418335407	0	lncRNA	22217-1_{1..308}	lnc-ROS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ROS1-1:1	chr6	117774570	117774877	-	lnc-ROS1-1	lnc-ROS1-1:1	ENSG00000226181.1	RP1-92C8.3	NA	NA	NA	inter
CUST_37468_PI429285431	2.5964775	A	0.9299173	A	3.17456782148864	0	lncRNA	38567-1_{1..489}	n345923|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1472|NULL|-1.4803400|-0.2258162	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345923|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1472|NULL|-1.4803400|-0.2258162	chr6	 31021261	 31021749	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40527_PI429285431	3.0040472	A	3.1695547	P	0.891614818946592	0	lncRNA	41289-1_{1..1123}	n409630|NR_034014|lncRNA|Homosapiens||RefGeneNoncode|NR_034014||-0.4556020|-0.1626437	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409630|NR_034014|lncRNA|Homosapiens||RefGeneNoncode|NR_034014||-0.4556020|-0.1626437	chr1	 59250822	 59251944	+	NA	NA	NA	NA	JUN	NA	chr1:59246463-59249785	inter
CUST_11423_PI429285431	0.90190303	A	0.89416313	A	1.00537930665441	0	lncRNA	12991-1_{1..1189}	lnc-CTD-3203P2.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-3203P2.2.1-1:1	chr16	 27301566	 27302754	+	lnc-CTD-3203P2.2.1-1	lnc-CTD-3203P2.2.1-1:1	XLOC_011681	linc-IL4R-1	NA	NA	NA	inter
CUST_29861_PI429285431	4.0419817	P	3.9518497	P	1.06446757191385	0	lncRNA	31624-1_{1..220}	n333786|L19366|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192338_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192338_06|-1.2787400|-0.4258976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333786|L19366|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192338_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192338_06|-1.2787400|-0.4258976	chr10	 51853158	 51853377	-	NA	NA	NA	NA	FAM21A	NA	chr10:51843158-51863378	inner
CUST_5528_PI429285431	1.7294567	A	2.4507244	A	0.60656421835448	0	lncRNA	5459-1_{1..1235}	"transcript_id ""ENST00000564222.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564222.1"" | genecode_v17"	chr16	 49204463	 49205697	+	ENSG00000261815.1	ENST00000564222.1	RP11-22D3.2	RP11-22D3.2-001	NA	NA	NA	inter
CUST_44128_PI429285431	5.734888	P	4.804476	P	1.90582017610089	0	lncRNA	48792-1_{1..3000}	"gi|374532810|ref|NR_046252.1| Homo sapiens FGD5 antisense RNA 1 (FGD5-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|374532810|ref|NR_046252.1| Homo sapiens FGD5 antisense RNA 1 (FGD5-AS1), transcript variant 2, non-coding RNA"	Chr3	 14984286	 14987285	-	100505641	NR_046252.1	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50"	NA	inter
LNCA_21_P0007362	0.92454094	A	0.9119874	A	1.00873941852525	0	lncRNA	TCONS_00019665	NA	NA	NA	NA	XLOC_009473	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009473), lincRNA [TCONS_00019665]"	chr11:65254427-65254368	hs|11q13.1	Agilent_HUMAN_G3V2	TCONS_00019665	TCONS_00019665	chr11	 65254368	 65254427	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2756_PI429285431	1.4381922	A	1.4184108	A	1.01380585428754	0	lncRNA	2739-1_{1..547}	"transcript_id ""ENST00000435547.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435547.1"" | genecode_v17"	chr7	  6120734	  6121280	+	ENSG00000231704.1	ENST00000435547.1	AC004895.4	AC004895.4-001	NA	NA	NA	inter
CUST_36115_PI429285431	1.3942885	A	1.4454477	A	0.965160514467534	0	lncRNA	37407-1_{1..239}	n344692|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_241|NULL|-1.3687700|-0.1856229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344692|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_241|NULL|-1.3687700|-0.1856229	chr15	 52222725	 52222963	-	NA	NA	NA	NA	LEO1	NA	chr15:52216237-52238374	inter
CUST_8023_PI429285431	0.92728984	A	0.9095183	A	1.01239447550659	0	lncRNA	9633-1_{1..3000}	lnc-YTHDF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YTHDF1-1:1	chr20	 61823948	 61826947	-	lnc-YTHDF1-1	lnc-YTHDF1-1:1	ENSG00000249254	ENST00000504036	YTHDF1	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60chr20:61826781-61835062"	NA	inter
CUST_31004_PI429285431	6.71369	P	7.3646393	P	0.636861118201359	0	lncRNA	32792-1_{1..865}	n337167|AK226040|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000385170|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000385170|2.7917000|-0.2491841	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337167|AK226040|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000385170|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000385170|2.7917000|-0.2491841	chr17	 79993719	 79994583	-	NA	NA	NA	NA	LRRC45	NA	chr17:79983719-79989027	inner
CUST_6588_PI429285431	0.90357554	A	1.204381	A	0.811799040518968	0	lncRNA	6536-1_{1..748}	"transcript_id ""ENST00000594721.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594721.1"" | genecode_v17"	chr19	 55402039	 55402786	+	ENSG00000268734.1	ENST00000594721.1	CTB-61M7.2	CTB-61M7.2-001	FCAR	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60chr19:55392039-55401839"	NA	inter
CUST_40327_PI429285431	1.1348046	A	0.91089946	A	1.16789060101395	0	lncRNA	41131-1_{1..603}	n408369|NR_029462|lncRNA|Homosapiens||RefGeneNoncode|NR_029462||-1.2057400|-0.1488833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408369|NR_029462|lncRNA|Homosapiens||RefGeneNoncode|NR_029462||-1.2057400|-0.1488833	chr6	  2839498	  2840100	+	NA	NA	NA	NA	SERPINB1	NA	chr6:2833733-2842081	inter
CUST_50760_PI429285431	2.910143	A	2.8640661	A	1.03245356690781	0	lncRNA	54424-1_{1..306}	hg19_lincRNAsTranscripts_TCONS_l2_00004346 range=chr11:3404708-3407971 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004346 range=chr11:3404708-3407971 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	  3404708	  3405013	+	NA	NA	NA	NA	ZNF195	NA	chr11:3394708-3400452	inter
CUST_36_PI429201921	2.319895	A	3.214533	A	0.537882143297223	0	lncRNA	37-1_{1..1201}	TC0Y000224.hg.1	TCONS_00017565-XLOC_008270 // Rinn lincRNAs // linc-SHOX-5 chrY:+:231384-232052 // chrY // 100 // 100 // 0 // --- // 0 /// TCONS_00017599-XLOC_008270 // Rinn lincRNAs // linc-SHOX-5 chrY:+:231724-232586 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:+:231384-232052	NA	Affy_HUMAN_HTA2.0	TCONS_00017565-XLOC_008270	linc-SHOX-5	chrY	   231384	   232052	+	NA	NA	NA	NA	COMMD9	NA	chr11:36293842-36304909	Unknown
CUST_822_PI429285431	0.90626204	A	1.3817194	A	0.719238742379913	0	lncRNA	815-1_{1..779}	"transcript_id ""ENST00000366209.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000366209.2"" | genecode_v17"	chr2	 33931953	 33932731	+	ENSG00000203386.2	ENST00000366209.2	AC009499.1	AC009499.1-002	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10"	NA	inter
CUST_34774_PI429285431	6.6728907	P	6.8336864	P	0.894531567401356	0	lncRNA	36213-1_{1..964}	n341683|BC042185|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4154|NULL|3.0702900|-0.1083644	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341683|BC042185|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4154|NULL|3.0702900|-0.1083644	chr9	 35646266	 35647229	+	NA	NA	NA	NA	SIT1	NA	chr9:35649295-35650947	inter
CUST_38210_PI429285431	2.7365837	A	2.6708763	A	1.04659799481675	0	lncRNA	39277-1_{1..3000}	n381569|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lgo.1||5.7850500|-0.1883787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n381569|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lgo.1||5.7850500|-0.1883787	chr10	124516209	124519208	+	NA	NA	NA	NA	NA	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90"	NA	inter
CUST_25925_PI429285431	5.254038	P	5.314974	P	0.958641964268098	0	lncRNA	27444-1_{1..463}	lnc-TMC7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMC7-1:1	chr16	 18948178	 18948640	+	lnc-TMC7-1	lnc-TMC7-1:1	ENSG00000260352.1	CTD-2288F12.1	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10"	NA	inter
LNCA_21_P0004021	0.96950036	A	0.9244703	A	1.03170467568041	0	lncRNA	TCONS_00009438	NA	NA	NA	NA	XLOC_004451	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004451), lincRNA [TCONS_00009438]"	chr5:85815388-85815447	hs|5q14.3	Agilent_HUMAN_G3V2	TCONS_00009438	TCONS_00009438	chr5	 85815388	 85815447	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9281_PI429285431	0.928991	A	1.3778594	A	0.732617262263011	0	lncRNA	10787-1_{1..724}	lnc-C1orf31-7:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf31-7:4	chr1	234855038	234855761	+	lnc-C1orf31-7	lnc-C1orf31-7:4	XLOC_000625	linc-GGPS1-3	NA	NA	NA	inter
CUST_2811_PI429285431	10.500622	P	10.328073	P	1.12704803128499	0	lncRNA	2794-1_{1..982}	"transcript_id ""ENST00000578968.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000578968.1"" | genecode_v17"	chr7	 45022622	 45023603	-	ENSG00000232956.3	ENST00000578968.1	SNHG15	SNHG15-001	MYO1G	NA	chr7:45012622-45018704	inter
CUST_12874_PI429285431	0.9126536	A	0.9052499	A	1.00514504429661	0	lncRNA	14500-1_{1..583}	lnc-TNFRSF19-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFRSF19-5:4	chr13	 24045055	 24045637	+	lnc-TNFRSF19-5	lnc-TNFRSF19-5:4	XLOC_010309	linc-TNFRSF19-4	NA	NA	NA	inter
CUST_17655_PI429285431	5.661518	P	6.1416593	P	0.716907405441704	0	lncRNA	19384-1_{1..674}	lnc-RP11-168K9.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-168K9.2.1-1:1	chr11	126925991	126926664	+	lnc-RP11-168K9.2.1-1	lnc-RP11-168K9.2.1-1:1	XLOC_009324	linc-FLI1-5	NA	NA	NA	inter
CUST_44234_PI429285431	4.4016647	P	4.6582437	P	0.837070476736293	0	lncRNA	48883-1_{1..2761}	"gi|223972609|ref|NR_026954.1| Homo sapiens uncharacterized LOC90246 (LOC90246), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223972609|ref|NR_026954.1| Homo sapiens uncharacterized LOC90246 (LOC90246), non-coding RNA"	Chr3	128226678	128229438	+	90246	NR_026954.1	NA	NA	NA	NA	NA	inter
CUST_28752_PI429285431	3.5148003	P	3.6995554	P	0.879798410562187	0	lncRNA	30455-2_{3001..3834}	n326151|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096163|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096163|0.2448390|-0.3383417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326151|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096163|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096163|0.2448390|-0.3383417	chr1	241289238	241290071	-	NA	NA	NA	NA	RGS7	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.41;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-24.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80chr1:241276238-241341669"	NA	inner
CUST_7214_PI429285431	0.9107613	A	1.2676238	A	0.780860911147612	0	lncRNA	7651-1_{1..292}	"transcript_id ""ENST00000411075.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411075.1"" | genecode_v17"	chr5	  5126159	  5126450	+	ENSG00000223007.1	ENST00000411075.1	RN7SKP73	RN7SKP73-201	NA	NA	NA	inter
CUST_44475_PI429285431	3.9920583	P	3.6232154	P	1.29131672674864	0	lncRNA	49079-1_{1..1451}	"gi|380420347|ref|NR_046442.1| Homo sapiens MAFF interacting protein (pseudogene) (MAFIP), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|380420347|ref|NR_046442.1| Homo sapiens MAFF interacting protein (pseudogene) (MAFIP), transcript variant 4, non-coding RNA"	NT_113888.1	    61657	    63107	-	727764	NR_046442.1	NA	NA	NA	NA	NA	Unknown
CUST_12696_PI429285431	3.54457	P	4.049657	P	0.704617885150455	0	lncRNA	14313-2_{3001..3288}	lnc-GNA12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNA12-2:1	chr7	  2765138	  2765425	-	lnc-GNA12-2	lnc-GNA12-2:1	XLOC_006335	linc-C7orf27-3	AMZ1	"hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-58.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.71chr7:2752138-2755069"	NA	inter
CUST_5908_PI429285431	2.8559124	A	2.5141892	A	1.2672693564305	0	lncRNA	5839-1_{1..713}	"transcript_id ""ENST00000576871.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000576871.1"" | genecode_v17"	chr17	 55155659	 55156371	-	ENSG00000263004.1	ENST00000576871.1	RP11-166P13.3	RP11-166P13.3-002	AKAP1	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50chr17:55162553-55172383"	NA	inter
CUST_1127_PI429285431	3.2458882	P	3.2559795	P	0.993029650224881	0	lncRNA	1116-1_{1..747}	"transcript_id ""ENST00000414967.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414967.1"" | genecode_v17"	chr2	146672658	146673404	+	ENSG00000233842.1	ENST00000414967.1	AC062031.1	AC062031.1-001	NA	NA	NA	inter
LNCA_21_P0006866	6.3134255	P	6.582457	P	0.829876465756396	0	lncRNA	XR_110548	XR_110548	XR_110548	NA	NA	LOC100506853	uncharacterized LOC100506853	NA	THC2675641	NA	"PREDICTED: Homo sapiens hypothetical LOC100506853 (LOC100506853), miscRNA [XR_110548]"	chr10:44409798-44409857	hs|10q11.21	Agilent_HUMAN_G3V2	XR_110548	XR_110548	chr10	 44409798	 44409857	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14701_PI429285431	8.58847	P	7.862037	P	1.6545432449533	0	lncRNA	16365-1_{1..569}	lnc-FOXL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXL1-2:1	chr16	 86729779	 86730347	+	lnc-FOXL1-2	lnc-FOXL1-2:1	XLOC_011815	linc-MAP1LC3B-6	NA	NA	NA	inter
CUST_22223_PI429285431	1.4560322	A	0.91977096	A	1.45020940978987	0	lncRNA	23823-1_{1..384}	lnc-SASS6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SASS6-1:1	chr1	100549736	100550119	-	lnc-SASS6-1	lnc-SASS6-1:1	ENSG00000241073.1	RP4-714D9.2	HIAT1	NA	chr1:100539736-100548933	inner
CUST_11166_PI429285431	1.0010866	A	1.2955271	A	0.815388491671834	0	lncRNA	12723-1_{1..217}	lnc-NLGN1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NLGN1-1:5	chr3	174177031	174177247	+	lnc-NLGN1-1	lnc-NLGN1-1:5	XLOC_002925	linc-NAALADL2	NA	NA	NA	inter
CUST_46537_PI429285431	5.368534	P	5.5806203	P	0.86328791635384	0	lncRNA	50725-1_{1..3000}	"gi|298676494|ref|NR_033738.1| Homo sapiens chondroitin sulfate proteoglycan 4 pseudogene (LOC440300), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298676494|ref|NR_033738.1| Homo sapiens chondroitin sulfate proteoglycan 4 pseudogene (LOC440300), non-coding RNA"	Chr15	 84860600	 84863599	+	440300	NR_033738.1	NA	NA	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0,hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0,hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0,hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0,hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_GOLGA2:range=chr9:131019346-1310382555'pad=0,hg19_refFlat_GOLGA2:range=chr9:131019346-1310382555'pad=0 3'pad=0 strand=- repeatMasking=none,-101.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0,hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80"	NA	inter
CUST_49766_PI429285431	3.3920047	P	3.4874287	P	0.935997122690621	0	lncRNA	53529-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026563 range=chr7:51455484-51463804 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026563 range=chr7:51455484-51463804 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 51455484	 51458483	-	NA	NA	NA	NA	LOC100131871	NA	chr7:51459730-51460910	inter
CUST_37925_PI429285431	6.987056	P	6.882546	P	1.07512916928995	0	lncRNA	39013-3_{6001..6141}	n346465|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2015|NULL|-1.4387300|-0.2230069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n346465|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2015|NULL|-1.4387300|-0.2230069	chr19	 36809987	 36810127	-	NA	NA	NA	NA	ZFP14	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-60.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90chr19:36825355-36832640"	NA	inter
CUST_40031_PI429285431	0.9057639	A	0.9089109	A	0.99782104320324	0	lncRNA	40889-1_{1..3000}	n407221|NR_026686|lncRNA|Homosapiens||RefGeneNoncode|NR_026686||3.8937900|-0.4040145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407221|NR_026686|lncRNA|Homosapiens||RefGeneNoncode|NR_026686||3.8937900|-0.4040145	chr1	 26438267	 26441266	+	NA	NA	NA	NA	PDIK1L	NA	chr1:26437656-26452034	inner
LNCA_21_P0013075	4.1540556	P	4.099533	P	1.03851539289896	0	lncRNA	TCONS_l2_00024683	NA	NA	NA	NA	XLOC_l2_012932	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012932), lincRNA [TCONS_l2_00024683]"	chr6:28287107-28287048	hs|6p22.1	Agilent_HUMAN_G3V2	TCONS_l2_00024683	TCONS_l2_00024683	chr6	 28287048	 28287107	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45775_PI429285431	1.892946	A	2.0473042	A	0.898532006606606	0	lncRNA	50120-1_{1..3000}	"gi|387849277|ref|NR_049725.1| Homo sapiens NAV2 antisense RNA 5 (NAV2-AS5), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|387849277|ref|NR_049725.1| Homo sapiens NAV2 antisense RNA 5 (NAV2-AS5), non-coding RNA"	Chr11	 19524219	 19527218	-	100874012	NR_049725.1	NA	NA	NA	NA	NA	inter
CUST_38142_PI429285431	0.90739536	A	2.2610097	A	0.391310481670152	0	lncRNA	39213-1_{1..2321}	n381323|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gyk.1||4.3857500|-0.1838388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n381323|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gyk.1||4.3857500|-0.1838388	chr1	202830881	202833201	+	NA	NA	NA	NA	RABIF	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.10chr1:202848085-202854369"	NA	inter
CUST_15098_PI429285431	3.6669683	P	4.057111	P	0.76305412545945	0	lncRNA	16762-1_{1..1076}	lnc-MTA3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTA3-2:1	chr2	 43180230	 43181305	+	lnc-MTA3-2	lnc-MTA3-2:1	XLOC_001446	linc-PLEKHH2-5	NA	NA	NA	inter
CUST_38451_PI429285431	3.0002842	A	3.4300723	P	0.74237081516441	0	lncRNA	39472-1_{1..3000}	n382710|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bnt.2||-0.8513050|-0.1688713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n382710|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bnt.2||-0.8513050|-0.1688713	chr15	 89904809	 89907808	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7015_PI429285431	10.606569	P	11.7494545	P	0.452852930915066	0	lncRNA	6962-1_{1..860}	"transcript_id ""ENST00000422914.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422914.1"" | genecode_v17"	chrX	  5571462	  5572321	-	ENSG00000236120.2	ENST00000422914.1	RP11-733O18.1	RP11-733O18.1-001	NA	NA	NA	inter
LNCA_21_P0002969	1.6597017	A	2.0911188	A	0.741533050054284	0	lncRNA	TCONS_00006078	NA	NA	NA	NA	XLOC_002690	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002690), lincRNA [TCONS_00006078]"	chr3:66027406-66027465	hs|3p14.1	Agilent_HUMAN_G3V2	TCONS_00006078	TCONS_00006078	chr3	 66027406	 66027465	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3347_PI429285431	2.2560978	A	1.7330265	A	1.43701119388552	0	lncRNA	3322-1_{1..1064}	"transcript_id ""ENST00000517606.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517606.1"" | genecode_v17"	chr8	142065389	142066452	+	ENSG00000253266.1	ENST00000517606.1	RP11-128L5.1	RP11-128L5.1-001	NA	NA	NA	inter
LNCA_21_P0007994	2.8178043	A	3.1057477	P	0.819068831044699	0	lncRNA	ENST00000425350	NA	NA	NA	NA	XLOC_010607	NA	ENST00000425350	NA	NA	"BROAD Institute lincRNA (XLOC_010607), lincRNA [TCONS_00021651]"	chr13:49151169-49151110	hs|13q14.2	Agilent_HUMAN_G3V2	ENST00000425350	ENST00000425350	chr13	 49151110	 49151169	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23491_PI429285431	4.361835	P	4.377184	P	0.989417279145387	0	lncRNA	25058-1_{1..584}	lnc-MARCH4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MARCH4-2:2	chr2	217363330	217363913	-	lnc-MARCH4-2	lnc-MARCH4-2:2	ENSG00000232485.2	AC098820.3	RPL37A	NA	chr2:217363520-217366190	inter
CUST_928_PI429285431	0.9397623	A	1.1075605	A	0.890200243173608	0	lncRNA	918-1_{1..574}	"transcript_id ""ENST00000450944.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450944.1"" | genecode_v17"	chr2	 67551759	 67552332	+	ENSG00000236605.1	ENST00000450944.1	AC023115.4	AC023115.4-001	NA	NA	NA	inter
CUST_52162_PI429285431	7.325527	P	7.2287784	P	1.06936072784093	0	lncRNA	55684-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017934 range=chr22:23738063-23744587 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017934 range=chr22:23738063-23744587 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 23738063	 23741062	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008043	0.93287504	A	1.3120804	A	0.768860964558243	0	lncRNA	TCONS_00021745	NA	NA	NA	NA	XLOC_010336	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010336), lincRNA [TCONS_00021745]"	chr13:30992945-30993004	hs|13q12.3	Agilent_HUMAN_G3V2	TCONS_00021745	TCONS_00021745	chr13	 30992945	 30993004	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5155_PI429285431	1.3526001	A	1.1132185	A	1.18048654659636	0	lncRNA	5096-1_{1..462}	"transcript_id ""ENST00000559570.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559570.1"" | genecode_v17"	chr15	 39804683	 39805144	-	ENSG00000259390.1	ENST00000559570.1	RP11-27M9.1	RP11-27M9.1-002	NA	NA	NA	inter
CUST_34947_PI429285431	4.006275	P	3.970979	P	1.0247670545261	0	lncRNA	36364-2_{3001..4824}	n341865|BX648461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4345|NULL|-1.2056900|-0.3930871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341865|BX648461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4345|NULL|-1.2056900|-0.3930871	chr6	 46724802	 46726625	-	NA	NA	NA	NA	LOC100287718	"hg19_refFlat_ANKRD66:range=chr6:46714659-467266585'pad=0,hg19_refFlat_ANKRD66:range=chr6:46714659-467266585'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.50chr6:46714654-46726955"	NA	inner
CUST_5829_PI429285431	6.3435097	P	5.873014	P	1.38558546387765	0	lncRNA	5757-1_{1..381}	"transcript_id ""ENST00000587668.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587668.1"" | genecode_v17"	chr17	 34232042	 34232422	-	ENSG00000266999.1	ENST00000587668.1	AC015849.16	AC015849.16-002	NA	NA	NA	inter
LNCA_21_P0010596	5.147808	P	5.252813	P	0.929801720160374	0	lncRNA	TCONS_l2_00000977	NA	NA	NA	NA	XLOC_l2_000735	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000735), lincRNA [TCONS_l2_00000977]"	chr1:1006425-1006366	hs|1p36.33	Agilent_HUMAN_G3V2	TCONS_l2_00000977	TCONS_l2_00000977	chr1	  1006366	  1006425	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42303_PI429285431	0.9164624	A	1.1435865	A	0.854336248096353	0	lncRNA	44920-1_{1..74}	ENST00000516981 ncrna:snoRNA chromosome:GRCh37:1:184647068:184647141:1 gene:ENSG00000252790 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516981 ncrna:snoRNA chromosome:GRCh37:1:184647068:184647141:1 gene:ENSG00000252790 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	184647068	184647141	+	ENSG00000252790	ENST00000516981	NA	NA	NA	NA	NA	inter
CUST_15030_PI429285431	0.90711683	A	0.90088695	A	1.0043275607203	0	lncRNA	16693-1_{1..1228}	lnc-C16orf72-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C16orf72-4:3	chr16	  9611040	  9612267	+	lnc-C16orf72-4	lnc-C16orf72-4:3	XLOC_011639	linc-ATF7IP2-2	NA	NA	NA	inter
CUST_46764_PI429285431	13.225014	P	12.940907	P	1.21765632492428	0	lncRNA	50914-1_{1..936}	"gi|224548960|ref|NR_027165.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|224548960|ref|NR_027165.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 9, non-coding RNA"	Chr17	 16342301	 16343236	+	125144	NR_027165.1	NA	NA	NA	NA	NA	inter
CUST_33061_PI429285431	0.9254901	A	1.6811366	A	0.592280913276699	0	lncRNA	34671-1_{1..2204}	n339749|BC037164|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2195|NULL|-0.7278670|-0.1216607	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339749|BC037164|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2195|NULL|-0.7278670|-0.1216607	chr20	 61088964	 61091167	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12604_PI429285431	2.3795078	A	2.1358376	A	1.18400091837548	0	lncRNA	14217-1_{1..1770}	lnc-IMPACT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IMPACT-1:1	chr18	 21981064	 21982833	+	lnc-IMPACT-1	lnc-IMPACT-1:1	XLOC_012641	linc-IMPACT-1	OSBPL1A	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20chr18:21971064-21977833"	NA	inter
CUST_42833_PI429285431	7.541955	P	7.413667	P	1.09299590814932	0	lncRNA	45865-1_{1..138}	ENST00000458862 ncrna:snoRNA chromosome:GRCh37:5:76376259:76376396:-1 gene:ENSG00000238961 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000458862 ncrna:snoRNA chromosome:GRCh37:5:76376259:76376396:-1 gene:ENSG00000238961 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	 76376259	 76376396	-	ENSG00000238961	ENST00000458862	NA	NA	ZBED3	NA	chr5:76372532-76383030	inner
CUST_10846_PI429285431	0.9165785	A	0.90572715	A	1.00754994081543	0	lncRNA	12384-1_{1..482}	lnc-AKR1B1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AKR1B1-1:1	chr7	134102724	134103205	-	lnc-AKR1B1-1	lnc-AKR1B1-1:1	XLOC_006613	linc-SLC35B4-2	NA	NA	NA	inter
CUST_1740_PI429285431	0.91539085	A	0.90504265	A	1.00719861198455	0	lncRNA	1726-1_{1..538}	"transcript_id ""ENST00000508199.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508199.1"" | genecode_v17"	chr4	 37080199	 37080736	+	ENSG00000247810.2	ENST00000508199.1	RP11-103J17.1	RP11-103J17.1-001	NA	NA	NA	inter
CUST_39124_PI429285431	0.9094058	A	0.9013709	A	1.00558490604439	0	lncRNA	40100-1_{1..2439}	n385709|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bzx.1||0.3464430|-0.2969116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385709|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bzx.1||0.3464430|-0.2969116	chr9	133738695	133741133	+	NA	NA	NA	NA	ABL1	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50chr9:133728695-133751134"	NA	inner
CUST_38927_PI429285431	0.918754	A	1.8818913	A	0.512940254279205	0	lncRNA	39917-1_{1..1550}	n385032|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qlv.2||-1.0361600|-0.3205686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n385032|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qlv.2||-1.0361600|-0.3205686	chr6	147182942	147184491	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51558_PI429285431	3.0119874	A	3.7932138	P	0.581871947731377	0	lncRNA	55123-1_{1..301}	hg19_lincRNAsTranscripts_TCONS_l2_00010595 range=chr17:18353521-18354072 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010595 range=chr17:18353521-18354072 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 18353521	 18353821	+	NA	NA	NA	NA	LGALS9C	NA	chr17:18343521-18364072	inter
CUST_18570_PI429285431	2.2110882	A	2.0170887	A	1.14393057674761	0	lncRNA	20279-1_{1..3000}	lnc-ITGA2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITGA2-1:4	chr5	 52408070	 52411069	+	lnc-ITGA2-1	lnc-ITGA2-1:4	ENSG00000247796	CTD-2366F13.1	MOCS2	NA	chr5:52398070-52405598	inter
CUST_35852_PI429285431	2.6207547	A	1.3854995	A	2.35422988006273	0	lncRNA	37249-1_{1..3000}	n344520|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_68|NULL|-1.3155100|-0.3532158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n344520|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_68|NULL|-1.3155100|-0.3532158	chr2	208103707	208106706	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15352_PI429285431	3.1973827	A	2.9994156	A	1.14708086527385	0	lncRNA	17034-1_{1..608}	lnc-CRYBA4-1:42	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:42	chr22	 27174419	 27175026	+	lnc-CRYBA4-1	lnc-CRYBA4-1:42	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
LNCA_21_P0014808	10.171817	P	10.353695	P	0.881554702508332	0	lncRNA	XR_132629	XR_132629	XR_132629	NA	NA	LOC100288420	"NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa pseudogene"	NA	NA	NA	"PREDICTED: Homo sapiens NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4-like (LOC100288420), miscRNA [XR_132629]"	chr17:19743786-19743845	hs|17p11.2	Agilent_HUMAN_G3V2	XR_132629	XR_132629	chr17	 19743786	 19743845	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43720_PI429285431	3.1209922	A	3.4848523	P	0.777082619835064	0	lncRNA	48465-2_{3001..4942}	"gi|365192582|ref|NR_027459.2| Homo sapiens synaptotagmin XIV (SYT14), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|365192582|ref|NR_027459.2| Homo sapiens synaptotagmin XIV (SYT14), transcript variant 6, non-coding RNA"	Chr1	210114519	210116460	+	255928	NR_027459.2	NA	NA	NA	NA	NA	inter
CUST_9793_PI429285431	8.702994	P	8.322802	P	1.30151505508286	0	lncRNA	11310-1_{1..1463}	lnc-GLRX3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLRX3-3:1	chr10	132014246	132015708	+	lnc-GLRX3-3	lnc-GLRX3-3:1	XLOC_008668	linc-PPP2R2D-4	NA	NA	NA	inter
CUST_46226_PI429285431	8.569016	P	8.783267	P	0.861993562380725	0	lncRNA	50466-1_{1..2385}	"gi|388890256|ref|NR_051964.1| Homo sapiens mitochondrial ribosomal protein S31 pseudogene 3 (MRPS31P3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|388890256|ref|NR_051964.1| Homo sapiens mitochondrial ribosomal protein S31 pseudogene 3 (MRPS31P3), transcript variant 3, non-coding RNA"	Chr13	 52741844	 52744228	-	100887750	NR_051964.1	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10"	NA	inter
LNCA_21_P0004238	0.9186663	A	0.90377325	A	1.01037654238465	0	lncRNA	TCONS_00009913	NA	NA	NA	NA	XLOC_004325	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004325), lincRNA [TCONS_00009913]"	chr5:29162715-29162774	hs|5p13.3	Agilent_HUMAN_G3V2	TCONS_00009913	TCONS_00009913	chr5	 29162715	 29162774	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21792_PI429285431	7.757949	P	7.507779	P	1.18934725350418	0	lncRNA	23402-1_{1..777}	lnc-MARVELD3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MARVELD3-2:1	chr16	 71757619	 71758395	+	lnc-MARVELD3-2	lnc-MARVELD3-2:1	ENSG00000261513.1	RP11-432I5.8	AP1G1	NA	chr16:71762903-71768133	inter
LNCA_21_P0001071	3.4891014	P	3.0911589	P	1.31762743537745	0	lncRNA	ENST00000412647	NA	NA	NA	NA	XLOC_000606	NA	ENST00000412647	NA	NA	"BROAD Institute lincRNA (XLOC_000606), lincRNA [TCONS_00000415]"	chr1:230731270-230731329	hs|1q42.2	Agilent_HUMAN_G3V2	ENST00000412647	ENST00000412647	chr1	230731270	230731329	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8254_PI429285431	1.5131385	A	1.132255	A	1.30213903545227	0	lncRNA	9843-2_{3001..5330}	lnc-KLHL36-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL36-2:1	chr16	 84611898	 84614227	+	lnc-KLHL36-2	lnc-KLHL36-2:1	ENSG00000245982	ENST00000499573	COTL1	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_COTL1:range=chr16:84600451-846515205'pad=0,hg19_refFlat_COTL1:range=chr16:84600451-846515205'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-64.40chr16:84599202-84620702"	NA	inner
CUST_23060_PI429285431	0.8996864	A	0.9033656	A	0.997453021959892	0	lncRNA	24631-1_{1..514}	lnc-BEND5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BEND5-1:1	chr1	 49937668	 49938181	-	lnc-BEND5-1	lnc-BEND5-1:1	ENSG00000225623.1	AGBL4-IT1	AGBL4	NA	chr1:49927668-49947757	inner
CUST_2193_PI429285431	2.4926453	A	3.1214364	P	0.646718102940652	0	lncRNA	2185-1_{1..330}	"transcript_id ""ENST00000508217.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508217.2"" | genecode_v17"	chr5	 71986376	 71986705	-	ENSG00000251613.3	ENST00000508217.2	CTC-347C20.1	CTC-347C20.1-003	TNPO1	NA	chr5:72021244-72068554	inter
CUST_49208_PI429285431	0.91073185	A	0.9080392	A	1.00186814556945	0	lncRNA	53027-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00020888 range=chr4:174563946-174584210 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020888 range=chr4:174563946-174584210 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	174563946	174566945	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42378_PI429285431	6.260714	P	6.484832	P	0.85611825859979	0	lncRNA	45058-1_{1..125}	ENST00000408792 ncrna:snoRNA chromosome:GRCh37:16:2846409:2846533:-1 gene:ENSG00000221719 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408792 ncrna:snoRNA chromosome:GRCh37:16:2846409:2846533:-1 gene:ENSG00000221719 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	  2846409	  2846533	-	ENSG00000221719	ENST00000408792	NA	NA	PRSS33	NA	chr16:2836409-2836708	inter
CUST_15643_PI429285431	1.5892712	A	2.1876001	A	0.660518603203014	0	lncRNA	17335-1_{1..708}	lnc-AP000769.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP000769.1-1:1	chr11	 65220340	 65221047	+	lnc-AP000769.1-1	lnc-AP000769.1-1:1	XLOC_009167	linc-SCYL1-3	NA	NA	NA	inter
CUST_2123_PI429285431	0.89683145	A	0.8918762	A	1.00344062296804	0	lncRNA	2114-1_{1..470}	"transcript_id ""ENST00000506492.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506492.1"" | genecode_v17"	chr5	 29380403	 29380872	-	ENSG00000248391.1	ENST00000506492.1	CTD-2010I22.2	CTD-2010I22.2-001	NA	NA	NA	inter
CUST_4626_PI429285431	2.4163976	A	3.1747882	P	0.591155427089221	0	lncRNA	4572-1_{1..731}	"transcript_id ""ENST00000428276.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428276.1"" | genecode_v17"	chr13	 51095069	 51095799	-	ENSG00000229323.1	ENST00000428276.1	RP11-175B12.2	RP11-175B12.2-001	NA	NA	NA	inter
CUST_17373_PI429285431	0.91593105	A	0.9133589	A	1.00178446879333	0	lncRNA	19094-1_{1..1209}	lnc-BAG2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BAG2-4:1	chr6	 58186873	 58188081	+	lnc-BAG2-4	lnc-BAG2-4:1	XLOC_005332	linc-MTRNR2L9-3	NA	NA	NA	inter
CUST_44703_PI429285431	2.6729293	A	3.0327713	A	0.779249916298922	0	lncRNA	49260-1_{1..746}	"gi|392050766|ref|NR_052012.1| Homo sapiens HLA complex group 17 (non-protein coding) (HCG17), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|392050766|ref|NR_052012.1| Homo sapiens HLA complex group 17 (non-protein coding) (HCG17), non-coding RNA"	NT_167249.1	  1532221	  1532966	-	414778	NR_052012.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005990	5.1535625	P	4.9679956	P	1.13726376771403	0	lncRNA	BC036850	NA	BC036850	NA	Hs.553987	XLOC_007438	NA	NA	THC2611258	NA	"BROAD Institute lincRNA (XLOC_007438), lincRNA [TCONS_00015577]"	chr9:89615891-89615950	hs|9q21.33	Agilent_HUMAN_G3V2	BC036850	BC036850	chr9	 89615891	 89615950	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22670_PI429285431	3.9209557	P	4.56552	P	0.639685949330251	0	lncRNA	24253-2_{3001..4067}	lnc-CCDC148-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC148-1:1	chr2	159594240	159595306	-	lnc-CCDC148-1	lnc-CCDC148-1:1	ENSG00000204380.2	AC005042.4	NA	"hg19_refFlat_PKP4:range=chr2:159389697-1595371895'pad=0,hg19_refFlat_PKP4:range=chr2:159389697-1595371895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10"	NA	inter
LNCA_21_P0009116	8.048507	P	7.9914727	P	1.04032499990105	0	lncRNA	TCONS_00024905	NA	NA	NA	NA	XLOC_011826	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011826), lincRNA [TCONS_00024905]"	chr16:88219894-88219953	hs|16q24.2	Agilent_HUMAN_G3V2	TCONS_00024905	TCONS_00024905	chr16	 88219894	 88219953	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49903_PI429285431	10.818741	P	10.75486	P	1.04527387774089	0	lncRNA	53652-1_{1..458}	hg19_lincRNAsTranscripts_TCONS_l2_00026085 range=chr7:89748304-89748982 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026085 range=chr7:89748304-89748982 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 89748304	 89748761	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25093_PI429285431	2.8668127	A	2.9159317	A	0.966526370318513	0	lncRNA	26630-1_{1..385}	lnc-ESR1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ESR1-2:1	chr6	152725987	152726371	+	lnc-ESR1-2	lnc-ESR1-2:1	ENSG00000226193.1	RP3-398G3.5	SYNE1	NA	chr6:152715987-152736101	inner
CUST_30594_PI429285431	1.2025607	A	1.3148353	A	0.92512832400416	0	lncRNA	32376-1_{1..358}	n335888|X64147|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322646|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322646|1.5966700|-0.0672936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335888|X64147|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322646|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322646|1.5966700|-0.0672936	chr14	106330426	106330783	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20049_PI429285431	0.9198384	A	0.90645516	A	1.00931971566707	0	lncRNA	21700-1_{1..527}	lnc-AGGF1-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGGF1-3:9	chr5	 76447049	 76447575	+	lnc-AGGF1-3	lnc-AGGF1-3:9	ENSG00000250802.2	CTC-564N23.3	NA	NA	NA	inter
CUST_31840_PI429285431	2.3656137	A	3.0289075	P	0.631435028205675	0	lncRNA	33574-1_{1..1753}	n338386|BC044305|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|782|NULL|-0.7974760|-0.2093126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338386|BC044305|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|782|NULL|-0.7974760|-0.2093126	chr14	 73710725	 73712477	-	NA	NA	NA	NA	PAPLN	"hg19_refFlat_PAPLN:range=chr14:73706487-737393725'pad=0,hg19_refFlat_PAPLN:range=chr14:73706487-737393725'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.70chr14:73704205-73722687"	NA	inner
CUST_31680_PI429285431	0.92699534	A	0.92802954	A	0.999283404063459	0	lncRNA	33427-2_{3001..3173}	n338204|AK055194|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|596|NULL|0.0275504|-0.3373976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338204|AK055194|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|596|NULL|0.0275504|-0.3373976	chr1	118508992	118509164	+	NA	NA	NA	NA	WDR3	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SPAG17:range=chr1:118506422-1187277805'pad=0,hg19_refFlat_SPAG17:range=chr1:118506422-1187277805'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60chr1:118495992-118503049"	NA	inner
CUST_31033_PI429285431	3.5757074	P	4.2115655	P	0.643557919340482	0	lncRNA	32822-1_{1..581}	n337246|BC127632|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389260|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389260|-0.8566860|-0.1287487	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337246|BC127632|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389260|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389260|-0.8566860|-0.1287487	chr9	140703294	140703874	-	NA	NA	NA	NA	EHMT1	NA	chr9:140693294-140713875	inner
CUST_18514_PI429285431	5.6981187	P	5.881952	P	0.880360731286863	0	lncRNA	20228-1_{1..630}	lnc-RASA1-3:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASA1-3:11	chr5	 87583253	 87583882	+	lnc-RASA1-3	lnc-RASA1-3:11	ENSG00000247828	CTC-358I24.1	NA	NA	NA	inter
CUST_12077_PI429285431	4.216769	P	4.8709893	P	0.635418808586434	0	lncRNA	13668-2_{3001..4159}	lnc-C15orf2-2:26	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-2:26	chr15	 24835714	 24836872	+	lnc-C15orf2-2	lnc-C15orf2-2:26	XLOC_011181	linc-C15orf2-1	NA	NA	NA	inter
CUST_14458_PI429285431	1.0309842	A	0.903046	A	1.09273092933456	0	lncRNA	16121-1_{1..333}	lnc-SGTB-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SGTB-4:2	chr5	 65736080	 65736412	-	lnc-SGTB-4	lnc-SGTB-4:2	XLOC_004850	linc-SGTB-2	NA	NA	NA	inter
CUST_49468_PI429285431	0.8981129	A	1.0943115	A	0.872847427532886	0	lncRNA	53263-1_{1..704}	hg19_lincRNAsTranscripts_TCONS_l2_00024970 range=chr6:147182942-147429706 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024970 range=chr6:147182942-147429706 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	147182942	147183645	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9296_PI429285431	0.910233	A	0.89734757	A	1.00897150432865	0	lncRNA	10801-1_{1..531}	lnc-PCDH18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH18-1:1	chr4	138671967	138672497	-	lnc-PCDH18-1	lnc-PCDH18-1:1	XLOC_004091	linc-PCDH18-1	NA	NA	NA	inter
LNCA_21_P0003862	0.9259665	A	1.5890217	A	0.631539466671619	0	lncRNA	TCONS_00008935	NA	NA	NA	NA	XLOC_003783	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003783), lincRNA [TCONS_00008935]"	chr4:174438636-174438695	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_00008935	TCONS_00008935	chr4	174438636	174438695	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51966_PI429285431	1.2846555	A	2.3032901	A	0.493583269899175	0	lncRNA	55508-1_{1..981}	hg19_lincRNAsTranscripts_TCONS_l2_00016249 range=chr20:37252055-37268146 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016249 range=chr20:37252055-37268146 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 37252055	 37253035	+	NA	NA	NA	NA	ARHGAP40	NA	chr20:37242055-37278146	inner
CUST_47603_PI429285431	3.8900447	P	4.607234	P	0.608281359803624	0	lncRNA	51606-1_{1..471}	"gi|300796221|ref|NR_034116.1| Homo sapiens long intergenic non-protein coding RNA 684 (LINC00684), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300796221|ref|NR_034116.1| Homo sapiens long intergenic non-protein coding RNA 684 (LINC00684), non-coding RNA"	NW_004070882.1	   627180	   627650	+	100129407	NR_034116.1	NA	NA	NA	NA	NA	Unknown
CUST_30522_PI429285431	3.5140786	P	4.2366304	P	0.60602457375842	0	lncRNA	32302-1_{1..490}	n335680|CR616786|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000295981_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000295981_07|-1.2440900|-0.3193080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335680|CR616786|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000295981_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000295981_07|-1.2440900|-0.3193080	chr6	  1949488	  1949977	-	NA	NA	NA	NA	GMDS	NA	chr6:1939488-1959978	inner
CUST_5131_PI429285431	0.9131004	A	1.0965979	A	0.880565666864054	0	lncRNA	5071-1_{1..733}	"transcript_id ""ENST00000602684.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602684.1"" | genecode_v17"	chr15	 30941000	 30941732	+	ENSG00000269974.1	ENST00000602684.1	RP11-932O9.10	RP11-932O9.10-001	ARHGAP11B	NA	chr15:30931000-30931013	inter
CUST_10841_PI429285431	0.9129079	A	0.9071999	A	1.00396432132241	0	lncRNA	12377-1_{1..499}	lnc-TEK-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TEK-2:1	chr9	 27245986	 27246484	+	lnc-TEK-2	lnc-TEK-2:1	XLOC_007307	linc-IFNK	NA	NA	NA	inter
CUST_3195_PI429285431	6.8090863	P	6.6961536	P	1.08142431515468	0	lncRNA	3174-1_{1..508}	"transcript_id ""ENST00000520603.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520603.1"" | genecode_v17"	chr8	 79064557	 79065064	+	ENSG00000254001.1	ENST00000520603.1	RP11-91P17.1	RP11-91P17.1-001	NA	NA	NA	inter
CUST_36008_PI429285431	0.925435	A	0.9255	A	0.999954946448205	0	lncRNA	37342-1_{1..2609}	n344619|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_167|NULL|-1.6639600|-0.2398706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344619|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_167|NULL|-1.6639600|-0.2398706	chr18	  3347674	  3350282	-	NA	NA	NA	NA	TGIF1	NA	chr18:3377924-3393509	inter
CUST_43832_PI429285431	4.0920157	P	4.7145166	P	0.649543972080145	0	lncRNA	48556-1_{1..1068}	"gi|257096065|ref|NR_028386.1| Homo sapiens uncharacterized LOC375196 (LOC375196), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|257096065|ref|NR_028386.1| Homo sapiens uncharacterized LOC375196 (LOC375196), non-coding RNA"	Chr2	 39186428	 39187495	-	375196	NR_028386.1	NA	NA	NA	"hg19_refFlat_ARHGEF33:range=chr2:39146589-392009845'pad=0,hg19_refFlat_ARHGEF33:range=chr2:39146589-392009845'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.10"	NA	inter
CUST_13094_PI429285431	5.528921	P	5.7162127	P	0.87825287542939	0	lncRNA	14718-1_{1..711}	lnc-PCDH18-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH18-3:1	chr4	137502800	137503510	-	lnc-PCDH18-3	lnc-PCDH18-3:1	XLOC_004089	linc-PABPC4L-7	NA	"hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
CUST_7965_PI429285431	9.032623	P	8.067634	P	1.9520486378686	0	lncRNA	9577-1_{1..1114}	lnc-SERPINC1-1:21	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SERPINC1-1:21	chr1	173836129	173837242	-	lnc-SERPINC1-1	lnc-SERPINC1-1:21	ENSG00000234741	GAS5	DARS2	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50chr1:173826129-173827682"	NA	inter
CUST_49922_PI429285431	3.5686717	P	3.1642416	P	1.32356596602681	0	lncRNA	53672-1_{1..287}	hg19_lincRNAsTranscripts_TCONS_l2_00026783 range=chr7:97599957-97601647 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026783 range=chr7:97599957-97601647 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 97599957	 97600243	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29377_PI429285431	6.575511	P	8.021805	P	0.366962869760419	0	lncRNA	31129-1_{1..442}	n332647|AB038671|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059238|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059238|-0.2425480|-0.2892063	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332647|AB038671|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059238|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059238|-0.2425480|-0.2892063	chr11	 27680022	 27680463	-	NA	NA	NA	NA	BDNF	NA	chr11:27676440-27743605	inter
CUST_23085_PI429285431	0.90162975	A	0.9007056	A	1.00064077717695	0	lncRNA	24657-1_{1..391}	lnc-TRIP4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TRIP4-1:1	chr15	 64763503	 64763893	+	lnc-TRIP4-1	lnc-TRIP4-1:1	ENSG00000259682.1	RP11-702L15.3	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60"	NA	inter
CUST_3566_PI429285431	7.0519185	P	7.3664875	P	0.804091174235959	0	lncRNA	3536-1_{1..390}	"transcript_id ""ENST00000450850.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450850.1"" | genecode_v17"	chr9	138244530	138244919	+	ENSG00000235572.1	ENST00000450850.1	RP11-555H7.2	RP11-555H7.2-001	NA	NA	NA	inter
CUST_34825_PI429285431	1.1778533	A	0.9237261	A	1.19261401847133	0	lncRNA	36256-1_{1..2432}	n341731|AL137620|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4204|NULL|-0.9449190|-0.2509743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341731|AL137620|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4204|NULL|-0.9449190|-0.2509743	chr9	 98534604	 98537035	+	NA	NA	NA	NA	LOC100506667	NA	chr9:98532606-98534956	inter
CUST_6069_PI429285431	1.2589144	A	0.95432144	A	1.23507012697358	0	lncRNA	5993-1_{1..463}	"transcript_id ""ENST00000581798.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581798.1"" | genecode_v17"	chr18	  5381640	  5382102	-	ENSG00000266288.1	ENST00000581798.1	CTD-3096M3.2	CTD-3096M3.2-001	EPB41L3	NA	chr18:5392388-5395329	inter
CUST_20775_PI429285431	4.325467	P	4.5732484	P	0.842190554316013	0	lncRNA	22408-1_{1..514}	lnc-SPINK9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPINK9-1:1	chr5	147810153	147810666	+	lnc-SPINK9-1	lnc-SPINK9-1:1	ENSG00000251330.2	CTD-2283N19.1	HTR4	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00chr5:147800153-147820370"	NA	inner
CUST_14878_PI429285431	1.4755526	A	0.90187466	A	1.48831297456104	0	lncRNA	16544-1_{1..473}	lnc-PRDM4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRDM4-2:2	chr12	108230930	108231402	-	lnc-PRDM4-2	lnc-PRDM4-2:2	XLOC_010190	linc-PRDM4-3	NA	NA	NA	inter
CUST_50333_PI429285431	5.2518597	P	5.335689	P	0.943549885324448	0	lncRNA	54051-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00029080 range=chr9:132264726-132275305 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029080 range=chr9:132264726-132275305 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132264726	132267725	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00"	NA	inter
CUST_10572_PI429285431	8.393934	P	8.460192	P	0.955112116525029	0	lncRNA	12104-1_{1..370}	lnc-C9orf69-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf69-2:3	chr9	138999502	138999871	-	lnc-C9orf69-2	lnc-C9orf69-2:3	XLOC_007894	linc-NACC2	C9orf69	NA	chr9:139006427-139009842	inter
CUST_33416_PI429285431	5.1961308	P	5.4978986	P	0.811257716005855	0	lncRNA	34996-1_{1..691}	n340145|AF086181|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2605|NULL|-1.0082500|-0.2575023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340145|AF086181|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2605|NULL|-1.0082500|-0.2575023	chr10	114716294	114716984	+	NA	NA	NA	NA	TCF7L2	NA	chr10:114710009-114726950	inner
CUST_15250_PI429285431	4.1109505	P	4.2897	P	0.883468437765608	0	lncRNA	16921-1_{1..483}	lnc-KCTD6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCTD6-1:1	chr3	 58429381	 58429863	+	lnc-KCTD6-1	lnc-KCTD6-1:1	XLOC_002675	linc-KCTD6	PDHB	NA	chr3:58419381-58419579	inter
CUST_16090_PI429285431	0.9191289	A	0.9035836	A	1.01083344219807	0	lncRNA	17794-1_{1..367}	lnc-MARCKS-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MARCKS-6:1	chr6	113518503	113518869	+	lnc-MARCKS-6	lnc-MARCKS-6:1	XLOC_005436	linc-MARCKS-2	NA	NA	NA	inter
LNCA_21_P0010098	7.8724785	P	8.207941	P	0.792530026152697	0	lncRNA	TCONS_00028585	NA	NA	NA	NA	XLOC_013602	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013602), lincRNA [TCONS_00028585]"	chr20:61198442-61198501	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028585	TCONS_00028585	chr20	 61198442	 61198501	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46072_PI429285431	4.060416	P	3.365809	P	1.6184434979585	0	lncRNA	50344-1_{1..958}	"gi|295849291|ref|NR_033654.1| Homo sapiens tachykinin 3 (TAC3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|295849291|ref|NR_033654.1| Homo sapiens tachykinin 3 (TAC3), transcript variant 3, non-coding RNA"	Chr12	 57403781	 57404738	-	6866	NR_033654.1	NA	NA	NA	NA	NA	inter
CUST_51982_PI429285431	0.91977096	A	0.9295163	A	0.993267808479413	0	lncRNA	55520-1_{1..1354}	hg19_lincRNAsTranscripts_TCONS_l2_00017318 range=chr21:14410651-14418742 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017318 range=chr21:14410651-14418742 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr21	 14410651	 14412004	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80"	NA	inter
CUST_37510_PI429285431	1.2200682	A	0.92278534	A	1.22882788526163	0	lncRNA	38614-1_{1..1124}	n345984|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1533|NULL|-1.3251000|-0.2938961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345984|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1533|NULL|-1.3251000|-0.2938961	chr19	 20578692	 20579815	+	NA	NA	NA	NA	ZNF737	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF506:range=chr19:19905361-199324125'pad=0,hg19_refFlat_ZNF506:range=chr19:19905361-199324125'pad=0 3'pad=0 strand=- repeatMasking=none,-62.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF626:range=chr19:20828202-208442525'pad=0,hg19_refFlat_ZNF626:range=chr19:20828202-208442525'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF737:range=chr19:20727398-207484465'pad=0,hg19_refFlat_ZNF737:range=chr19:20727398-207484465'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_ZNF90:range=chr19:20188942-202301695'pad=0,hg19_refFlat_ZNF90:range=chr19:20188942-202301695'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_ZNF486:range=chr19:20278140-203089115'pad=0,hg19_refFlat_ZNF486:range=chr19:20278140-203089115'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF93:range=chr19:20011898-200456275'pad=0,hg19_refFlat_ZNF93:range=chr19:20011898-200456275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_ZNF492:range=chr19:22836202-228480675'pad=0,hg19_refFlat_ZNF492:range=chr19:22836202-228480675'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_ZNF626:range=chr19:20807096-208442525'pad=0,hg19_refFlat_ZNF626:range=chr19:20807096-208442525'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF273:range=chr7:64363696-643894165'pad=0,hg19_refFlat_ZNF273:range=chr7:64363696-643894165'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF257:range=chr19:22235435-222722445'pad=0,hg19_refFlat_ZNF257:range=chr19:22235435-222722445'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF253:range=chr19:19976806-200035565'pad=0,hg19_refFlat_ZNF253:range=chr19:19976806-200035565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50chr19:20599320-20601845"	NA	inter
CUST_32040_PI429285431	2.3686893	A	2.5330381	A	0.892331206710545	0	lncRNA	33755-1_{1..3000}	n338602|AL832586|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1008|NULL|-0.0437929|-0.3678242	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338602|AL832586|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1008|NULL|-0.0437929|-0.3678242	chr13	 25735825	 25738824	-	NA	NA	NA	NA	FAM123A	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chr13:25742660-25745857"	NA	inter
LNCA_21_P0011342	0.9196117	A	0.9207359	A	0.999221067465189	0	lncRNA	AK127420	NA	AK127420	NA	Hs.187134	LOC400464	uncharacterized LOC400464	NA	THC2483012	NA	"BROAD Institute lincRNA (XLOC_l2_004817), lincRNA [TCONS_l2_00008876]"	chr15:100353633-100353692	hs|15q26.3	Agilent_HUMAN_G3V2	AK127420	AK127420	chr15	100353633	100353692	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1114_PI429285431	2.532226	A	1.7348886	A	1.73789075956933	0	lncRNA	1103-1_{1..646}	"transcript_id ""ENST00000596970.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596970.1"" | genecode_v17"	chr2	145780795	145781440	+	ENSG00000226674.3	ENST00000596970.1	AC074093.1	AC074093.1-013	NA	NA	NA	inter
CUST_26145_PI429285431	0.90861857	A	0.9294677	A	0.985652406263898	0	lncRNA	27656-1_{1..341}	lnc-HDGFL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HDGFL1-3:1	chr6	 22317945	 22318285	+	lnc-HDGFL1-3	lnc-HDGFL1-3:1	ENSG00000260049.1	RP3-404K8.2	NA	NA	NA	inter
CUST_34424_PI429285431	5.802841	P	6.1396546	P	0.791788160379022	0	lncRNA	35904-1_{1..1614}	n341298|CR603563|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3767|NULL|-1.0984000|-0.2979541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341298|CR603563|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3767|NULL|-1.0984000|-0.2979541	chr7	107588858	107590471	-	NA	NA	NA	NA	LAMB1	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80chr7:107578858-107600472"	NA	inner
CUST_25108_PI429285431	0.9088447	A	0.92035526	A	0.992053231638884	0	lncRNA	26645-1_{1..587}	lnc-SNX25-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNX25-1:1	chr4	186311738	186312324	+	lnc-SNX25-1	lnc-SNX25-1:1	ENSG00000250410.1	RP11-714G18.1	UFSP2	"hg19_refFlat_LRP2BP:range=chr4:186288334-1862993405'pad=0,hg19_refFlat_LRP2BP:range=chr4:186288334-1862993405'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80chr4:186320694-186322082"	NA	inter
CUST_33175_PI429285431	0.9133724	A	1.3658903	A	0.730766345929754	0	lncRNA	34768-1_{1..678}	n339865|AF086240|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2313|NULL|-0.9374000|-0.4934361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n339865|AF086240|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2313|NULL|-0.9374000|-0.4934361	chr18	 44383186	 44383863	-	NA	NA	NA	NA	PIAS2	NA	chr18:44392060-44393857	inter
CUST_16826_PI429285431	4.041653	P	4.2608685	P	0.859032428925419	0	lncRNA	18532-1_{1..297}	lnc-NPTX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NPTX2-1:1	chr7	 98300215	 98300511	+	lnc-NPTX2-1	lnc-NPTX2-1:1	XLOC_006183	linc-TRRAP	NA	NA	NA	inter
CUST_50552_PI429285431	0.914786	A	1.7282724	A	0.569005143937989	0	lncRNA	54244-1_{1..743}	hg19_lincRNAsTranscripts_TCONS_l2_00030922 range=chrY:7673545-7678258 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030922 range=chrY:7673545-7678258 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrY	  7673545	  7674287	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29308_PI429285431	1.3606248	A	0.91808385	A	1.35899575531393	0	lncRNA	31059-1_{1..467}	n332489|EF405802|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468775|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468775|1.5330100|-0.0718034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332489|EF405802|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468775|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468775|1.5330100|-0.0718034	chr15	 32322748	 32323214	+	NA	NA	NA	NA	CHRNA7	NA	chr15:32322691-32414512	inter
CUST_31159_PI429285431	1.0643687	A	1.5137666	A	0.732348425363699	0	lncRNA	32954-1_{1..242}	n337547|EF491789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395516|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395516|1.3148500|-0.1683662	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337547|EF491789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395516|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395516|1.3148500|-0.1683662	chr6	152163737	152163978	+	NA	NA	NA	NA	ESR1	NA	chr6:152153737-152184803	inner
CUST_35279_PI429285431	3.961623	P	4.101711	P	0.907463801103142	0	lncRNA	36681-1_{1..561}	n342294|AF085853|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4786|NULL|-0.8078080|-0.3597534	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342294|AF085853|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4786|NULL|-0.8078080|-0.3597534	chr1	113400130	113400690	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21572_PI429285431	2.4626927	A	3.1349564	P	0.62752128499056	0	lncRNA	23186-1_{1..744}	lnc-IGFBP7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IGFBP7-1:2	chr4	 57906990	 57907733	-	lnc-IGFBP7-1	lnc-IGFBP7-1:2	ENSG00000250610.1	RP11-738E22.2	IGFBP7	NA	chr4:57897244-57917101	inner
CUST_44318_PI429285431	7.049872	P	7.2976036	P	0.84221962616578	0	lncRNA	48950-1_{1..1277}	"gi|384367977|ref|NR_047575.1| Homo sapiens TMEM44 antisense RNA 1 (TMEM44-AS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|384367977|ref|NR_047575.1| Homo sapiens TMEM44 antisense RNA 1 (TMEM44-AS1), transcript variant 3, non-coding RNA"	Chr3	194304997	194306273	+	100507297	NR_047575.1	NA	NA	NA	NA	NA	inter
CUST_31293_PI429285431	5.1767635	P	4.0456567	P	2.19026707693735	0	lncRNA	33079-3_{6001..6779}	n337752|D87445|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|134|NULL|16.8115000|-0.3645683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337752|D87445|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|134|NULL|16.8115000|-0.3645683	chr15	 49286966	 49287744	-	NA	NA	NA	NA	SECISBP2L	NA	chr15:49280835-49338760	inner
CUST_35815_PI429285431	8.216731	P	7.457219	P	1.6929178885293	0	lncRNA	37221-1_{1..983}	n344491|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_39|NULL|-1.2920200|-0.2704263	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344491|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_39|NULL|-1.2920200|-0.2704263	chr5	147328350	147329332	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00"	NA	inter
LNCA_21_P0004658	0.93207157	A	0.92393625	A	1.00565490306241	0	lncRNA	ENST00000449928	NA	NA	NA	NA	XLOC_005340	NA	ENST00000449928	NA	NA	"BROAD Institute lincRNA (XLOC_005340), lincRNA [TCONS_00011321]"	chr6:68770182-68770241	hs|6q12	Agilent_HUMAN_G3V2	ENST00000449928	ENST00000449928	chr6	 68770182	 68770241	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51564_PI429285431	0.9323201	A	1.0580679	A	0.916528850655841	0	lncRNA	55129-1_{1..660}	hg19_lincRNAsTranscripts_TCONS_l2_00011129 range=chr17:19342372-19364259 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011129 range=chr17:19342372-19364259 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 19342372	 19343031	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41850_PI429285431	0.9222284	A	0.9218986	A	1.00022862607111	0	lncRNA	43498-1_{1..91}	ENST00000362113 ncrna:miRNA chromosome:GRCh37:5:54466360:54466450:-1 gene:ENSG00000198983 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362113 ncrna:miRNA chromosome:GRCh37:5:54466360:54466450:-1 gene:ENSG00000198983 gene_biotype:miRNA transcript_biotype:miRNA	chr5	 54466360	 54466450	-	ENSG00000198983	ENST00000362113	NA	NA	CDC20B	NA	chr5:54456360-54469005	inner
CUST_15511_PI429285431	3.3139548	P	3.657096	P	0.788323015229277	0	lncRNA	17200-1_{1..763}	lnc-NBPF16-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-NBPF16-4:2	chr1	148556692	148557454	+	lnc-NBPF16-4	lnc-NBPF16-4:2	XLOC_000390	linc-NBPF15-1	NBPF15	NA	chr1:148558188-148567204	inter
LNCA_21_P0009876	1.697446	A	1.3011445	A	1.31612954614299	0	lncRNA	ENST00000450640	NA	NA	NA	NA	XLOC_013643	NA	ENST00000450640	NA	NA	"BROAD Institute lincRNA (XLOC_013643), lincRNA [TCONS_00027995]"	chr20:5488603-5488544	hs|20p12.3	Agilent_HUMAN_G3V2	ENST00000450640	ENST00000450640	chr20	  5488544	  5488603	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17168_PI429285431	4.9788485	P	5.631011	P	0.636325790144354	0	lncRNA	18878-1_{1..227}	lnc-CXCR5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CXCR5-1:1	chr11	118663602	118663828	+	lnc-CXCR5-1	lnc-CXCR5-1:1	XLOC_009294	linc-CXCR5-1	DDX6	NA	chr11:118653602-118661972	inter
CUST_21473_PI429285431	0.920653	A	0.9106836	A	1.00693419245017	0	lncRNA	23091-2_{3001..5786}	lnc-PPIAL4G-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PPIAL4G-9:1	chr1	142715961	142718746	-	lnc-PPIAL4G-9	lnc-PPIAL4G-9:1	ENSG00000203849.5	AL583842.6	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF717:range=chr3:75786029-758325135'pad=0,hg19_refFlat_ZNF717:range=chr3:75786029-758325135'pad=0 3'pad=0 strand=- repeatMasking=none,-61.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60"	NA	inter
CUST_47573_PI429285431	1.0983578	A	1.0888367	A	1.00662134846161	0	lncRNA	51578-1_{1..3000}	"gi|84872070|ref|NR_002784.1| Homo sapiens SMEK homolog 3, suppressor of mek1 (Dictyostelium) pseudogene (SMEK3P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|84872070|ref|NR_002784.1| Homo sapiens SMEK homolog 3, suppressor of mek1 (Dictyostelium) pseudogene (SMEK3P), non-coding RNA"	NA	NA	NA	NA	NA	NR_002784.1	NA	NA	NA	NA	NA	Unknown
CUST_36101_PI429285431	0.90815437	A	0.9122413	A	0.997171164709688	0	lncRNA	37396-1_{1..3000}	n344681|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_230|NULL|-1.3191300|-0.2580954	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344681|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_230|NULL|-1.3191300|-0.2580954	chr16	 14399433	 14402432	-	NA	NA	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
CUST_17353_PI429285431	0.9161849	A	0.91887057	A	0.998140167048259	0	lncRNA	19073-1_{1..876}	lnc-TRIML1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIML1-1:1	chr4	189081370	189082245	+	lnc-TRIML1-1	lnc-TRIML1-1:1	XLOC_003832	linc-FRG1-12	NA	NA	NA	inter
CUST_22972_PI429285431	10.7252245	P	10.56137	P	1.12027622537397	0	lncRNA	24546-1_{1..753}	lnc-TRPV2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRPV2-1:3	chr17	 16344682	 16345434	+	lnc-TRPV2-1	lnc-TRPV2-1:3	ENSG00000175061.10	C17orf76-AS1	C17orf76	NA	chr17:16345328-16355144	inter
CUST_22747_PI429285431	5.7190323	P	6.0897937	P	0.773374231312441	0	lncRNA	24330-1_{1..555}	lnc-ZNF286A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF286A-3:1	chr17	 15268640	 15269194	+	lnc-ZNF286A-3	lnc-ZNF286A-3:1	ENSG00000263704.1	RP11-849N15.5	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_8390_PI429285431	1.8548075	A	0.8936028	A	1.94693497392585	0	lncRNA	9968-1_{1..502}	lnc-DBN1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DBN1-2:4	chr5	176871397	176871898	-	lnc-DBN1-2	lnc-DBN1-2:4	ENSG00000246334	RP11-1334A24.4	PRR7	NA	chr5:176873796-176881478	inter
CUST_12702_PI429285431	0.9066292	A	1.6185731	A	0.610496995388619	0	lncRNA	14319-1_{1..332}	lnc-CDC16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDC16-1:1	chr13	114944538	114944869	+	lnc-CDC16-1	lnc-CDC16-1:1	XLOC_010517	linc-CDC16-2	NA	NA	NA	inter
CUST_26450_PI429285431	0.9188002	A	0.9110335	A	1.00539798310017	0	lncRNA	27958-1_{1..500}	lnc-MYOC-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYOC-2:1	chr1	171220662	171221161	-	lnc-MYOC-2	lnc-MYOC-2:1	ENSG00000231424.1	RP1-45C12.1	FMO1	NA	chr1:171217663-171230933	inner
CUST_1005_PI429285431	3.616562	P	2.9770408	A	1.55781206861092	0	lncRNA	994-1_{1..860}	"transcript_id ""ENST00000443123.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443123.1"" | genecode_v17"	chr2	107871147	107872006	-	ENSG00000229457.1	ENST00000443123.1	AC006227.1	AC006227.1-002	NA	NA	NA	inter
CUST_21732_PI429285431	4.6851497	P	4.9726095	P	0.819343433833722	0	lncRNA	23342-1_{1..829}	lnc-CTU2-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTU2-6:2	chr16	 88740012	 88740840	+	lnc-CTU2-6	lnc-CTU2-6:2	ENSG00000260630.1	RP5-1142A6.3	SNAI3	NA	chr16:88744090-88750055	inter
CUST_47371_PI429285431	4.6451583	P	3.2640135	P	2.60474979879577	0	lncRNA	51419-2_{3001..4028}	"gi|241982798|ref|NR_027873.1| Homo sapiens GC-rich sequence DNA-binding factor 1 (GCFC1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|241982798|ref|NR_027873.1| Homo sapiens GC-rich sequence DNA-binding factor 1 (GCFC1), transcript variant 3, non-coding RNA"	Chr21	 34109210	 34110237	-	94104	NR_027873.1	NA	NA	NA	NA	NA	inter
CUST_41695_PI429285431	0.91888875	A	0.9070997	A	1.00820502498475	0	lncRNA	43175-1_{1..70}	ENST00000582609 ncrna:miRNA chromosome:GRCh37:17:6558759:6558828:-1 gene:ENSG00000264468 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582609 ncrna:miRNA chromosome:GRCh37:17:6558759:6558828:-1 gene:ENSG00000264468 gene_biotype:miRNA transcript_biotype:miRNA	chr17	  6558759	  6558828	-	ENSG00000264468	ENST00000582609	NA	NA	MED31	NA	chr17:6548759-6554954	inter
CUST_512_PI429285431	5.048898	P	5.1274805	P	0.946987639343952	0	lncRNA	504-1_{1..858}	"transcript_id ""ENST00000458683.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458683.1"" | genecode_v17"	chr1	187061974	187062831	+	ENSG00000236030.1	ENST00000458683.1	RP11-108M21.1	RP11-108M21.1-001	NA	NA	NA	inter
CUST_50871_PI429285431	4.371254	P	5.2627506	P	0.539054632199582	0	lncRNA	54515-1_{1..496}	hg19_lincRNAsTranscripts_TCONS_l2_00004769 range=chr11:112161155-112164781 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004769 range=chr11:112161155-112164781 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	112161155	112161650	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7749_PI429285431	0.9198201	A	1.4452561	A	0.694749116552869	0	lncRNA	9378-1_{1..584}	lnc-SNURFL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNURFL-1:1	chrX	137798053	137798636	+	lnc-SNURFL-1	lnc-SNURFL-1:1	ENSG00000226031	RP1-260J9.2	FGF13	NA	chrX:137788053-137808254	inner
CUST_35714_PI429285431	5.0574093	P	5.964502	P	0.533258624918797	0	lncRNA	37134-1_{1..3000}	n342881|BC032104|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5387|NULL|0.1275940|-0.1256676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342881|BC032104|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5387|NULL|0.1275940|-0.1256676	chr9	139702412	139705411	-	NA	NA	NA	NA	C9orf86	"hg19_refFlat_RABL6:range=chr9:139702649-1397284115'pad=0,hg19_refFlat_RABL6:range=chr9:139702649-1397284115'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_RABL6:range=chr9:139702649-1397349745'pad=0,hg19_refFlat_RABL6:range=chr9:139702649-1397349745'pad=0 3'pad=0 strand=+ repeatMasking=none,-114.90chr9:139702374-139735639"	NA	inner
CUST_4622_PI429285431	2.9820344	P	2.7862926	A	1.14531290229658	0	lncRNA	4568-1_{1..552}	"transcript_id ""ENST00000594153.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594153.1"" | genecode_v17"	chr13	 47035080	 47035631	-	ENSG00000231817.2	ENST00000594153.1	RP11-189B4.6	RP11-189B4.6-003	LOC731932	"hg19_refFlat_OR1E1:range=chr17:3300760-33017045'pad=0,hg19_refFlat_OR1E1:range=chr17:3300760-33017045'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_OR7A17:range=chr19:14991238-149921675'pad=0,hg19_refFlat_OR7A17:range=chr19:14991238-149921675'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_OR1J2:range=chr9:125273081-1252740225'pad=0,hg19_refFlat_OR1J2:range=chr9:125273081-1252740225'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_OR7A5:range=chr19:14938094-149390535'pad=0,hg19_refFlat_OR7A5:range=chr19:14938094-149390535'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_OR1K1:range=chr9:125562402-1255633525'pad=0,hg19_refFlat_OR1K1:range=chr9:125562402-1255633525'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90chr13:47025080-47035198"	NA	inter
CUST_13615_PI429285431	4.4608564	P	5.026316	P	0.67574011139352	0	lncRNA	15254-1_{1..780}	lnc-PPP4R1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP4R1-2:3	chr18	  9334135	  9334914	-	lnc-PPP4R1-2	lnc-PPP4R1-2:3	XLOC_012754	linc-LAMA1-5	TWSG1	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60chr18:9334765-9344332"	NA	inter
LNCA_21_P0009008	0.92243606	A	1.3826442	A	0.72688138271556	0	lncRNA	TCONS_00024576	NA	NA	NA	NA	XLOC_011872	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011872), lincRNA [TCONS_00024576]"	chr16:10608890-10608831	hs|16p13.13	Agilent_HUMAN_G3V2	TCONS_00024576	TCONS_00024576	chr16	 10608831	 10608890	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38598_PI429285431	8.739088	P	7.595827	P	2.20879725481746	0	lncRNA	39606-1_{1..1720}	n383697|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tel.2||-0.4299340|-0.3452897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383697|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tel.2||-0.4299340|-0.3452897	chr2	109301977	109303696	+	NA	NA	NA	NA	LIMS1	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-26.30chr2:109291977-109303702"	NA	inner
CUST_10072_PI429285431	0.9861645	A	0.8883959	A	1.070117044032	0	lncRNA	11596-1_{1..346}	lnc-MAGI1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAGI1-2:1	chr3	 65094475	 65094820	-	lnc-MAGI1-2	lnc-MAGI1-2:1	XLOC_003150	linc-ADAMTS9-4	NA	NA	NA	inter
CUST_31026_PI429285431	2.8299036	A	2.9129477	A	0.944063560771886	0	lncRNA	32815-1_{1..463}	n337238|BC122566|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000388459|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000388459|-1.4265700|-0.2554000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337238|BC122566|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000388459|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000388459|-1.4265700|-0.2554000	chr21	 41526980	 41527442	+	NA	NA	NA	NA	DSCAM	NA	chr21:41516980-41537443	inter
CUST_33090_PI429285431	0.9113193	A	0.91033727	A	1.00068092304864	0	lncRNA	34694-1_{1..1695}	n339780|AF301223|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2227|NULL|2.0361700|-0.3289663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n339780|AF301223|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2227|NULL|2.0361700|-0.3289663	chr18	  5748817	  5750511	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35138_PI429285431	0.9251386	A	0.9177227	A	1.00515354423668	0	lncRNA	36540-1_{1..1932}	n342108|AK098461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4590|NULL|-1.2391200|-0.3372833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n342108|AK098461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4590|NULL|-1.2391200|-0.3372833	chr6	112538840	112540771	-	NA	NA	NA	NA	LAMA4	NA	chr6:112528840-112550771	inner
CUST_30973_PI429285431	3.3468118	P	3.6110504	P	0.832638053717052	0	lncRNA	32761-1_{1..335}	n337123|AB032733|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383135|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383135|1.8069300|-0.1038020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337123|AB032733|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383135|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383135|1.8069300|-0.1038020	chr2	218999677	219000011	+	NA	NA	NA	NA	CXCR2	NA	chr2:218990013-219001976	inner
CUST_14245_PI429285431	3.35707	P	3.457427	P	0.932802137780855	0	lncRNA	15903-1_{1..1867}	lnc-DTYMK-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DTYMK-2:1	chr2	242673809	242675675	-	lnc-DTYMK-2	lnc-DTYMK-2:1	XLOC_002554	linc-DTYMK-3	ING5	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.21;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40chr2:242663809-242668896"	NA	inter
CUST_807_PI429285431	3.4196181	P	3.587796	P	0.889965983994295	0	lncRNA	800-1_{1..579}	"transcript_id ""ENST00000430520.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430520.1"" | genecode_v17"	chr2	 22167481	 22168059	-	ENSG00000228999.1	ENST00000430520.1	AC068490.1	AC068490.1-001	NA	NA	NA	inter
CUST_34823_PI429285431	16.254591	P	16.258976	P	0.996965164066254	0	lncRNA	36254-1_{1..1750}	n341729|BC060667|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4202|NULL|0.5639140|-0.2758045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341729|BC060667|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4202|NULL|0.5639140|-0.2758045	chr9	 98207059	 98208808	+	NA	NA	NA	NA	PTCH1	"hg19_refFlat_RPL27A:range=chr11:8704361-87073535'pad=0,hg19_refFlat_RPL27A:range=chr11:8704361-87073535'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50chr9:98197059-98218373"	NA	inner
CUST_3793_PI429285431	4.6043262	P	4.930161	P	0.797836593182772	0	lncRNA	3761-1_{1..751}	"transcript_id ""ENST00000601410.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601410.1"" | genecode_v17"	chr10	109612916	109613666	-	ENSG00000229981.2	ENST00000601410.1	RP11-215N21.1	RP11-215N21.1-006	LOC100128304	NA	chr10:109673555-109675061	inter
CUST_10542_PI429285431	2.0344055	A	1.3399594	A	1.61826300725832	0	lncRNA	12070-1_{1..557}	lnc-PTN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PTN-1:1	chr7	137039108	137039664	-	lnc-PTN-1	lnc-PTN-1:1	XLOC_006620	linc-PTN	NA	NA	NA	inter
CUST_7832_PI429285431	1.25758	A	1.1919942	A	1.04650978424605	0	lncRNA	9456-1_{1..744}	lnc-WRNIP1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WRNIP1-2:6	chr6	  2398811	  2399554	+	lnc-WRNIP1-2	lnc-WRNIP1-2:6	ENSG00000250903	RP1-80B9.2	NA	NA	NA	inter
CUST_39471_PI429285431	0.9221876	A	0.9120616	A	1.00704349791565	0	lncRNA	40414-1_{1..517}	n387040|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wwy.1||-0.8555170|-0.2935808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387040|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wwy.1||-0.8555170|-0.2935808	chr17	   592240	   592756	-	NA	NA	NA	NA	VPS53	NA	chr17:582240-605386	inner
LNCA_21_P0005107	0.91651875	A	0.90209806	A	1.01004578409736	0	lncRNA	TCONS_00012426	NA	NA	NA	NA	XLOC_005173	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005173), lincRNA [TCONS_00012426]"	chr6:11953913-11953972	hs|6p24.1	Agilent_HUMAN_G3V2	TCONS_00012426	TCONS_00012426	chr6	 11953913	 11953972	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22361_PI429285431	0.9258095	A	1.1168334	A	0.875983803208611	0	lncRNA	23955-1_{1..2651}	lnc-AC005008.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC005008.2.1-1:1	chr7	 81656971	 81659621	+	lnc-AC005008.2.1-1	lnc-AC005008.2.1-1:1	ENSG00000223770.1	MIR1255B1	CACNA2D1	NA	chr7:81646971-81669271	inner
CUST_4733_PI429285431	3.6449013	P	4.491768	P	0.555990948013632	0	lncRNA	4677-1_{1..492}	"transcript_id ""ENST00000554678.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554678.1"" | genecode_v17"	chr14	 20942948	 20943439	-	ENSG00000258908.1	ENST00000554678.1	RP11-203M5.8	RP11-203M5.8-001	PNP	"hg19_refFlat_PNP:range=chr14:20937684-209447605'pad=0,hg19_refFlat_PNP:range=chr14:20937684-209447605'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30chr14:20937538-20946165"	NA	inner
CUST_38379_PI429285431	0.89725536	A	1.3658102	A	0.722688158230752	0	lncRNA	39418-1_{1..2963}	n382233|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yif.1||-1.0744300|-0.2299278	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382233|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yif.1||-1.0744300|-0.2299278	chr14	101320997	101323959	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24745_PI429285431	1.6670899	A	1.4724321	A	1.14445266999064	0	lncRNA	26290-1_{1..591}	lnc-CYB561-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYB561-2:1	chr17	 61508423	 61509013	-	lnc-CYB561-2	lnc-CYB561-2:1	ENSG00000263644.1	RP11-269G24.3	TANC2	NA	chr17:61498423-61505067	inter
CUST_29090_PI429285431	0.9192905	A	1.0945576	A	0.885603543627262	0	lncRNA	30821-1_{1..445}	n326584|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025346|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025346|-1.1207100|-0.4114664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326584|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025346|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025346|-1.1207100|-0.4114664	chr1	 63238755	 63239199	-	NA	NA	NA	NA	ATG4C	NA	chr1:63249777-63260730	inner
CUST_28497_PI429285431	13.332125	P	13.057271	P	1.20987164463231	0	lncRNA	30165-1_{1..258}	n325840|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051117|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051117|-1.1396900|-0.0634674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325840|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051117|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051117|-1.1396900|-0.0634674	chr10	134910382	134910639	+	NA	NA	NA	NA	GPR123	NA	chr10:134901409-134921380	inner
LNCA_21_P0013865	3.994618	P	4.0159845	P	0.985299001320402	0	lncRNA	ENST00000422194	XR_132685	XR_132685	NA	Hs.558667	XLOC_l2_015752	NA	ENST00000422194	THC2643762	NA	"PREDICTED: Homo sapiens uncharacterized protein CXorf49-like (LOC100129291), miscRNA [XR_132685]"	chrX:70882904-70882845	hs|Xq13.1	Agilent_HUMAN_G3V2	ENST00000422194	ENST00000422194	chrX	 70882845	 70882904	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11114_PI429285431	6.946256	P	7.0921755	P	0.903803156067194	0	lncRNA	12673-1_{1..3000}	lnc-SULF2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SULF2-2:1	chr20	 46528127	 46531126	-	lnc-SULF2-2	lnc-SULF2-2:1	XLOC_013771	linc-SULF2-3	NA	NA	NA	inter
CUST_45463_PI429285431	11.243622	P	11.2823	P	0.973546639088073	0	lncRNA	49878-1_{1..2141}	"gi|377652342|ref|NR_046367.1| Homo sapiens EGF-like-domain, multiple 7 (EGFL7), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|377652342|ref|NR_046367.1| Homo sapiens EGF-like-domain, multiple 7 (EGFL7), transcript variant 5, non-coding RNA"	Chr9	139553308	139555448	+	51162	NR_046367.1	NA	NA	NA	NA	NA	inter
CUST_4677_PI429285431	0.90512604	A	0.8975391	A	1.00527271817773	0	lncRNA	4623-1_{1..1844}	"transcript_id ""ENST00000433569.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433569.1"" | genecode_v17"	chr13	 95351948	 95353791	-	ENSG00000238230.1	ENST00000433569.1	LINC00391	LINC00391-001	SOX21	NA	chr13:95361876-95364389	inter
LNCA_21_P0005121	6.7590275	P	6.651099	P	1.07767973388731	0	lncRNA	ENST00000420766	XR_108615	XR_108615	NA	NA	XLOC_005371	NA	ENST00000420766	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506908 (LOC100506908), miscRNA [XR_108615]"	chr6:84697821-84697880	hs|6q14.2	Agilent_HUMAN_G3V2	ENST00000420766	ENST00000420766	chr6	 84697821	 84697880	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40312_PI429285431	10.41771	P	9.306091	P	2.16088006389992	0	lncRNA	41115-1_{1..2215}	n408346|NR_029417|lncRNA|Homosapiens||RefGeneNoncode|NR_029417||8.7196300|-0.1132558	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408346|NR_029417|lncRNA|Homosapiens||RefGeneNoncode|NR_029417||8.7196300|-0.1132558	chr12	 57623355	 57625569	+	NA	NA	NA	NA	STAC3	NA	chr12:57637242-57638718	inner
LNCA_21_P0008687	0.9195747	A	0.90632486	A	1.00922639239258	0	lncRNA	XR_109226	XR_109226	XR_109226	NA	NA	LOC100507288	uncharacterized LOC100507288	NA	THC2666603	NA	"PREDICTED: Homo sapiens hypothetical LOC100507288 (LOC100507288), miscRNA [XR_109226]"	chr15:96717243-96717302	hs|15q26.2	Agilent_HUMAN_G3V2	XR_109226	XR_109226	chr15	 96717243	 96717302	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14870_PI429285431	2.5021722	A	2.4753883	A	1.0187385892453	0	lncRNA	16534-1_{1..925}	lnc-ASB4-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASB4-3:3	chr7	 95239856	 95240780	+	lnc-ASB4-3	lnc-ASB4-3:3	XLOC_006178	linc-DYNC1I1-2	NA	NA	NA	inter
CUST_18915_PI429285431	4.6835337	P	4.5459566	P	1.10005610051785	0	lncRNA	20606-1_{1..1212}	lnc-AL592284.1-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL592284.1-1:14	chr1	144619347	144620558	+	lnc-AL592284.1-1	lnc-AL592284.1-1:14	ENSG00000225241	NBPF8	NBPF9	NA	chr1:144614959-144621685	inner
CUST_40151_PI429285431	3.5513399	P	4.3054156	P	0.592926137318645	0	lncRNA	40989-1_{1..1391}	n407804|NR_027336|lncRNA|Homosapiens||RefGeneNoncode|NR_027336||1.7016400|-0.0932173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407804|NR_027336|lncRNA|Homosapiens||RefGeneNoncode|NR_027336||1.7016400|-0.0932173	chr16	 90109309	 90110699	-	NA	NA	NA	NA	PRDM7	"hg19_refFlat_GAS8:range=chr16:90089130-901097535'pad=0,hg19_refFlat_GAS8:range=chr16:90089130-901097535'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.50chr16:90122974-90124191"	NA	inter
CUST_40378_PI429285431	1.9511743	A	2.5577784	A	0.656740758794819	0	lncRNA	41173-2_{3001..3361}	n409180|NR_033341|lncRNA|Homosapiens||RefGeneNoncode|NR_033341||1.2828100|-0.2550817	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409180|NR_033341|lncRNA|Homosapiens||RefGeneNoncode|NR_033341||1.2828100|-0.2550817	chr19	 44612491	 44612851	-	NA	NA	NA	NA	ZNF225	"hg19_refFlat_ZNF221:range=chr19:44466879-444715085'pad=0,hg19_refFlat_ZNF221:range=chr19:44466879-444715085'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF224:range=chr19:44602027-446124375'pad=0,hg19_refFlat_ZNF224:range=chr19:44602027-446124375'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90chr19:44617548-44627336"	NA	inter
CUST_7179_PI429285431	0.913803	A	0.91723835	A	0.997621629648575	0	lncRNA	7385-1_{1..300}	"transcript_id ""ENST00000410913.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410913.1"" | genecode_v17"	chr2	187987289	187987588	-	ENSG00000222845.1	ENST00000410913.1	RN7SKP42	RN7SKP42-201	NA	NA	NA	inter
CUST_23868_PI429285431	0.965319	A	0.9429445	A	1.01562970748912	0	lncRNA	25428-3_{6001..6584}	lnc-SETD6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SETD6-2:1	chr16	 60087759	 60088342	+	lnc-SETD6-2	lnc-SETD6-2:1	ENSG00000261807.1	RP11-430C1.1	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70"	NA	inter
CUST_50461_PI429285431	1.3610986	A	0.8993323	A	1.37722693339303	0	lncRNA	54163-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00030255 range=chrX:73207973-73230782 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030255 range=chrX:73207973-73230782 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 73210973	 73213972	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-19.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_10519_PI429285431	2.4449496	A	2.6312265	A	0.87887086088146	0	lncRNA	12047-1_{1..409}	lnc-TPM4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPM4-1:2	chr19	 16176915	 16177323	+	lnc-TPM4-1	lnc-TPM4-1:2	XLOC_012984	linc-TPM4-1	TPM4	NA	chr19:16166915-16187093	inter
CUST_15302_PI429285431	11.741466	P	11.431216	P	1.23992254352746	0	lncRNA	16980-1_{1..288}	lnc-S1PR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-S1PR2-1:1	chr19	 10361612	 10361899	-	lnc-S1PR2-1	lnc-S1PR2-1:1	XLOC_013220	linc-S1PR2	MRPL4	NA	chr19:10362640-10370736	inter
CUST_38823_PI429285431	0.9001598	A	0.8954294	A	1.00328424477556	0	lncRNA	39817-1_{1..1822}	n384612|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jgm.2||0.8107890|-0.3398298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384612|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jgm.2||0.8107890|-0.3398298	chr5	 22142460	 22144281	+	NA	NA	NA	NA	CDH12	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr5:22132460-22162370"	NA	inner
CUST_26346_PI429285431	1.6989032	A	1.5697783	A	1.09363013341211	0	lncRNA	27853-1_{1..442}	lnc-UBXN4-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBXN4-2:3	chr2	136743448	136743889	+	lnc-UBXN4-2	lnc-UBXN4-2:3	ENSG00000231890.1	AC093391.2	DARS	"hg19_refFlat_DARS:range=chr2:136664886-1367430385'pad=0,hg19_refFlat_DARS:range=chr2:136664886-1367430385'pad=0 3'pad=0 strand=- repeatMasking=none,-97.00chr2:136733448-136743222"	NA	inter
CUST_42088_PI429285431	0.90958965	A	0.90331393	A	1.00435947259737	0	lncRNA	44022-1_{1..85}	ENST00000577972 ncrna:miRNA chromosome:GRCh37:11:46473355:46473439:-1 gene:ENSG00000265014 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577972 ncrna:miRNA chromosome:GRCh37:11:46473355:46473439:-1 gene:ENSG00000265014 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 46473355	 46473439	-	ENSG00000265014	ENST00000577972	NA	NA	AMBRA1	NA	chr11:46463355-46483439	inner
CUST_43246_PI429285431	1.3874718	A	0.8964057	A	1.4054830937907	0	lncRNA	48063-1_{1..486}	ENST00000418571 havana:sense_intronic chromosome:GRCh37:9:8700595:8701552:-1 gene:ENSG00000235389 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,ensembl.GRCh37.72,"	>ENST00000418571 havana:sense_intronic chromosome:GRCh37:9:8700595:8701552:-1 gene:ENSG00000235389 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr9	  8700595	  8701080	-	ENSG00000235389	ENST00000418571	NA	NA	PTPRD	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70chr9:8690595-8711552"	NA	inner
CUST_44783_PI429285431	4.8266144	P	4.5166364	P	1.23968879548539	0	lncRNA	49322-1_{1..754}	"gi|310119807|ref|XR_108615.1| PREDICTED: Homo sapiens uncharacterized LOC100506908 (LOC100506908), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119807|ref|XR_108615.1| PREDICTED: Homo sapiens uncharacterized LOC100506908 (LOC100506908), misc_RNA"	Chr6	 84695149	 84695902	+	100506908	XR_108615.2	NA	NA	NA	NA	NA	inter
CUST_49059_PI429285431	3.1372337	P	0.90194	A	4.70858541254293	0	lncRNA	52886-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00020964 range=chr4:189659523-189663160 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020964 range=chr4:189659523-189663160 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	189659523	189662522	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35123_PI429285431	0.9086435	A	0.9053078	A	1.00231480608647	0	lncRNA	36526-3_{6001..7463}	n342089|AL833558|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4571|NULL|-0.9392120|-0.4404287	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342089|AL833558|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4571|NULL|-0.9392120|-0.4404287	chr6	 96662044	 96663506	+	NA	NA	NA	NA	FUT9	NA	chr6:96646044-96663488	inner
CUST_50722_PI429285431	3.443346	P	3.938337	P	0.709566104590088	0	lncRNA	54391-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00003714 range=chr10:95469445-95515325 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003714 range=chr10:95469445-95515325 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 95469445	 95472444	-	NA	NA	NA	NA	LGI1	NA	chr10:95517566-95525325	inter
CUST_10256_PI429285431	3.334896	P	3.3556452	P	0.985720681022925	0	lncRNA	11783-1_{1..374}	lnc-ENPP1-4:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENPP1-4:13	chr6	132490141	132490514	+	lnc-ENPP1-4	lnc-ENPP1-4:13	XLOC_005465	linc-TAAR9-1	NA	NA	NA	inter
CUST_37138_PI429285431	0.9235261	A	0.9675436	A	0.969950144701735	0	lncRNA	38260-1_{1..1009}	n345578|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1127|NULL|-1.7553900|-0.3592797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345578|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1127|NULL|-1.7553900|-0.3592797	chr3	 47210658	 47211666	-	NA	NA	NA	NA	SETD2	NA	chr3:47200658-47205467	inter
CUST_34017_PI429285431	5.163987	P	5.124726	P	1.02758732484013	0	lncRNA	35551-1_{1..1800}	n340833|AK098571|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3297|NULL|-1.1026900|-0.2516451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340833|AK098571|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3297|NULL|-1.1026900|-0.2516451	chr6	  6711294	  6713093	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20727_PI429285431	7.484718	P	7.3736715	P	1.08001136948976	0	lncRNA	22362-1_{1..3000}	lnc-TNPO3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNPO3-1:3	chr7	128550654	128553653	-	lnc-TNPO3-1	lnc-TNPO3-1:3	ENSG00000135253.8	KCP	KCP	NA	chr7:128540654-128550773	inner
CUST_47897_PI429285431	0.9079027	A	0.9045988	A	1.00229271322647	0	lncRNA	51790-1_{1..579}	"gi|410171824|ref|XR_171399.1| PREDICTED: Homo sapiens uncharacterized LOC100129297 (LOC100129297), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410171824|ref|XR_171399.1| PREDICTED: Homo sapiens uncharacterized LOC100129297 (LOC100129297), misc_RNA"	NA	NA	NA	NA	NA	XR_171399.1	NA	NA	NA	"hg19_refFlat_CD200R1L:range=chr3:112534810-1125482145'pad=0,hg19_refFlat_CD200R1L:range=chr3:112534810-1125482145'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CD200R1L:range=chr3:112534810-1125645715'pad=0,hg19_refFlat_CD200R1L:range=chr3:112534810-1125645715'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00"	NA	Unknown
CUST_3573_PI429285431	0.93187076	A	1.2015026	A	0.829531206100296	0	lncRNA	3543-1_{1..2434}	"transcript_id ""ENST00000425630.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000425630.1"" | genecode_v17"	chr10	  1205708	  1208141	+	ENSG00000229205.2	ENST00000425630.1	LINC00200	LINC00200-001	NA	NA	NA	inter
CUST_25189_PI429285431	3.1687062	A	3.664855	P	0.708996887916423	0	lncRNA	26720-1_{1..446}	lnc-RPS21-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS21-1:4	chr20	 60931248	 60931693	+	lnc-RPS21-1	lnc-RPS21-1:4	ENSG00000228812.2	RP11-157P1.5	LAMA5	"hg19_refFlat_LAMA5:range=chr20:60884392-609423015'pad=0,hg19_refFlat_LAMA5:range=chr20:60884392-609423015'pad=0 3'pad=0 strand=- repeatMasking=none,-97.00chr20:60921248-60941525"	NA	inner
CUST_10251_PI429285431	0.9372884	A	1.0427749	A	0.929491450273849	0	lncRNA	11778-1_{1..212}	lnc-NBEA-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NBEA-4:1	chr13	 35075408	 35075619	+	lnc-NBEA-4	lnc-NBEA-4:1	XLOC_010341	linc-NBEA-2	NA	NA	NA	inter
CUST_31082_PI429285431	4.5775256	P	5.493966	P	0.529814634726036	0	lncRNA	32873-1_{1..294}	n337344|DQ426880|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391923|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391923|-0.1356120|-0.4673479	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337344|DQ426880|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391923|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391923|-0.1356120|-0.4673479	chr16	 57805548	 57805841	-	NA	NA	NA	NA	KIFC3	NA	chr16:57795548-57823452	inner
CUST_10939_PI429285431	2.6248927	A	1.532372	A	2.13246298550512	0	lncRNA	12480-1_{1..514}	lnc-WFDC12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WFDC12-1:1	chr20	 43767454	 43767967	-	lnc-WFDC12-1	lnc-WFDC12-1:1	XLOC_013754	linc-WFDC12	NA	NA	NA	inter
CUST_2288_PI429285431	2.9947064	P	3.3714418	P	0.770178417198999	0	lncRNA	2280-1_{1..777}	"transcript_id ""ENST00000503650.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503650.1"" | genecode_v17"	chr5	103819905	103820681	-	ENSG00000251574.2	ENST00000503650.1	RP11-6N13.1	RP11-6N13.1-007	NA	NA	NA	inter
CUST_7709_PI429285431	2.6595423	A	2.5992827	A	1.0426533600589	0	lncRNA	9342-1_{1..2531}	lnc-DET1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DET1-1:1	chr15	 89052473	 89055003	-	lnc-DET1-1	lnc-DET1-1:1	ENSG00000248072	ENST00000501841	DET1	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.00chr15:89055714-89062959"	NA	inter
CUST_43174_PI429285431	6.2635984	P	6.646602	P	0.766839416316873	0	lncRNA	47988-1_{1..354}	ENST00000563427 havana:sense_intronic chromosome:GRCh37:HG989_PATCH:32010891:32013616:1 gene:ENSG00000260636 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000563427 havana:sense_intronic chromosome:GRCh37:HG989_PATCH:32010891:32013616:1 gene:ENSG00000260636 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chrHG989_PATCH	 32010891	 32011244	+	ENSG00000260636	ENST00000563427	NA	NA	NA	NA	NA	Unknown
CUST_27557_PI429285431	5.1553645	P	5.225461	P	0.952574279454943	0	lncRNA	29136-1_{1..542}	n324747|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319042|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319042|1.0782400|-0.3488991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324747|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319042|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319042|1.0782400|-0.3488991	chr22	 18705589	 18706130	+	NA	NA	NA	NA	LOC642643	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60chr22:18703328-18719425"	NA	inter
CUST_37908_PI429285431	1.0090154	A	0.9862386	A	1.01591295848329	0	lncRNA	38997-1_{1..1479}	n346447|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1997|NULL|-1.2963600|-0.2881680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346447|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1997|NULL|-1.2963600|-0.2881680	chr18	 56320674	 56322152	+	NA	NA	NA	NA	MALT1	"hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-17.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.82;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60chr18:56310674-56345416"	NA	inter
CUST_51377_PI429285431	0.95981055	A	0.9292337	A	1.02142045081495	0	lncRNA	54971-1_{1..1206}	hg19_lincRNAsTranscripts_TCONS_l2_00008876 range=chr15:100346547-100353719 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008876 range=chr15:100346547-100353719 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	100346547	100347752	+	NA	NA	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50"	NA	inter
CUST_10235_PI429285431	2.0430126	A	2.0585651	A	0.989277726287185	0	lncRNA	11759-1_{1..571}	lnc-BCKDHB-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BCKDHB-1:6	chr6	 81172589	 81173159	+	lnc-BCKDHB-1	lnc-BCKDHB-1:6	XLOC_005365	linc-TPBG-3	NA	NA	NA	inter
CUST_35762_PI429285431	1.9374832	A	1.5972533	A	1.26595831409811	0	lncRNA	37182-1_{1..1290}	n343063|AB116666|mRNAlikelncRNA|Homosapiens|Khps1a|lncRNAdb|343063|http://lncrnadb.com/Detail.aspx?TKeyID=102|-1.2931300|-0.1529557	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n343063|AB116666|mRNAlikelncRNA|Homosapiens|Khps1a|lncRNAdb|343063|http://lncrnadb.com/Detail.aspx?TKeyID=102|-1.2931300|-0.1529557	NA	NA	     1289	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46690_PI429285431	1.2018878	A	1.3175796	A	0.922939637308132	0	lncRNA	50852-1_{1..2611}	"gi|310124420|ref|XR_109334.1| PREDICTED: Homo sapiens uncharacterized LOC100129215 (LOC100129215), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124420|ref|XR_109334.1| PREDICTED: Homo sapiens uncharacterized LOC100129215 (LOC100129215), misc_RNA"	Chr16	 87727143	 87729753	-	100129215	XR_109334.1	NA	NA	NA	NA	NA	inter
CUST_26355_PI429285431	5.3852844	P	4.9636188	P	1.33947309209501	0	lncRNA	27862-1_{1..675}	lnc-IL36RN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL36RN-1:1	chr2	113822492	113823166	+	lnc-IL36RN-1	lnc-IL36RN-1:1	ENSG00000249076.1	AC016724.8	IL36RN	NA	chr2:113816215-113822321	inter
CUST_11827_PI429285431	1.7234251	A	1.688298	A	1.0246470894473	0	lncRNA	13409-1_{1..640}	lnc-FBXO4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXO4-1:1	chr5	 42157824	 42158463	+	lnc-FBXO4-1	lnc-FBXO4-1:1	XLOC_004360	linc-GHR	NA	NA	NA	inter
CUST_48593_PI429285431	7.28219	P	7.187207	P	1.06805282257106	0	lncRNA	52440-1_{1..465}	hg19_lincRNAsTranscripts_TCONS_l2_00013558 range=chr2:33860880-33862003 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013558 range=chr2:33860880-33862003 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 33860880	 33861344	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29501_PI429285431	5.099262	P	5.291378	P	0.875320946620161	0	lncRNA	31259-1_{1..697}	n332932|AF086516|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067395|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067395|-1.0400200|-0.1303585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332932|AF086516|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067395|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067395|-1.0400200|-0.1303585	chr7	100032898	100033594	+	NA	NA	NA	NA	ZCWPW1	"hg19_refFlat_PPP1R35:range=chr7:100032983-1000339975'pad=0,hg19_refFlat_PPP1R35:range=chr7:100032983-1000339975'pad=0 3'pad=0 strand=- repeatMasking=none,-104.80chr7:100022898-100026302"	NA	inner
CUST_4321_PI429285431	0.90053797	A	0.90198493	A	0.998997546548124	0	lncRNA	4276-1_{1..729}	"transcript_id ""ENST00000548029.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548029.1"" | genecode_v17"	chr12	 73597595	 73598323	-	ENSG00000257682.1	ENST00000548029.1	RP11-314D7.3	RP11-314D7.3-001	NA	NA	NA	inter
CUST_49078_PI429285431	0.92890775	A	0.9559171	A	0.981452703110391	0	lncRNA	52902-1_{1..891}	hg19_lincRNAsTranscripts_TCONS_l2_00021046 range=chr4:8747125-8749429 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021046 range=chr4:8747125-8749429 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  8747125	  8748015	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14568_PI429285431	1.3028554	A	2.048202	A	0.596524542372507	0	lncRNA	16235-2_{3001..4185}	lnc-RABGAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RABGAP1-1:1	chr9	125701623	125702807	+	lnc-RABGAP1-1	lnc-RABGAP1-1:1	XLOC_007556	linc-RABGAP1	RABGAP1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.30chr9:125703288-125712599"	NA	inter
CUST_4359_PI429285431	2.4411902	A	3.336344	A	0.537689871187235	0	lncRNA	4314-1_{1..599}	"transcript_id ""ENST00000549278.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549278.1"" | genecode_v17"	chr12	 89441964	 89442562	-	ENSG00000257156.1	ENST00000549278.1	RP11-13A1.3	RP11-13A1.3-001	DUSP6	NA	chr12:89713076-89713330	inter
CUST_14109_PI429285431	0.9241123	A	0.9366096	A	0.991374942816541	0	lncRNA	15756-1_{1..2843}	lnc-SLC15A4-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC15A4-8:1	chr12	128246794	128249636	-	lnc-SLC15A4-8	lnc-SLC15A4-8:1	XLOC_010254	linc-DHX37-18	NA	"hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-17.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.00"	NA	inter
CUST_13870_PI429285431	0.8966509	A	0.8963859	A	1.00018370087379	0	lncRNA	15514-1_{1..340}	lnc-TRIML2-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIML2-6:2	chr4	189739480	189739819	-	lnc-TRIML2-6	lnc-TRIML2-6:2	XLOC_004227	linc-TRIML2-2	NA	NA	NA	inter
CUST_27424_PI429285431	0.9050802	A	1.9674746	A	0.478836688160702	0	lncRNA	28989-1_{1..256}	n324594|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039810|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039810|-1.2216200|-0.4174984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324594|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039810|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039810|-1.2216200|-0.4174984	chr6	 10582718	 10582973	-	NA	NA	NA	NA	GCNT2	"hg19_refFlat_GCNT2:range=chr6:10586223-106268405'pad=0,hg19_refFlat_GCNT2:range=chr6:10586223-106268405'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60chr6:10572718-10596721"	NA	inner
CUST_12107_PI429285431	0.9014109	A	1.5915442	A	0.619796580277164	0	lncRNA	13704-1_{1..323}	lnc-CDR1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDR1-2:1	chrX	139769833	139770155	-	lnc-CDR1-2	lnc-CDR1-2:1	XLOC_008248	linc-SOX3-1	NA	NA	NA	inter
CUST_31794_PI429285431	0.9046722	A	0.9021856	A	1.00172506599656	0	lncRNA	33532-1_{1..472}	n338334|X89676|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|728|NULL|4.2082800|-0.1952467	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338334|X89676|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|728|NULL|4.2082800|-0.1952467	chr19	 14910102	 14910573	-	NA	NA	NA	NA	OR7C1	NA	chr19:14909986-14910948	inner
CUST_3910_PI429285431	1.8515435	A	2.420214	A	0.674237838810546	0	lncRNA	3879-1_{1..535}	"transcript_id ""ENST00000529910.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000529910.1"" | genecode_v17"	chr11	 36342708	 36343242	-	ENSG00000254566.1	ENST00000529910.1	RP11-514F3.4	RP11-514F3.4-001	PRR5L	NA	chr11:36332708-36354990	inner
CUST_19729_PI429285431	1.6014903	A	1.8957695	A	0.815479660985269	0	lncRNA	21387-1_{1..206}	lnc-SLC25A29-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC25A29-1:1	chr14	100757695	100757900	-	lnc-SLC25A29-1	lnc-SLC25A29-1:1	ENSG00000259052.1	AL157871.2	SLC25A29	NA	chr14:100757453-100767793	inner
CUST_10515_PI429285431	2.8036911	A	3.1508214	P	0.786146286498685	0	lncRNA	12042-1_{1..842}	lnc-SLC12A7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC12A7-2:1	chr5	  1003401	  1004242	-	lnc-SLC12A7-2	lnc-SLC12A7-2:1	XLOC_004699	linc-BRD9-2	NKD2	NA	chr5:1009168-1013982	inter
CUST_7623_PI429285431	3.1845758	A	3.0219781	A	1.11930072464339	0	lncRNA	9255-1_{1..531}	lnc-NBAS-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NBAS-4:4	chr2	 16081096	 16081626	-	lnc-NBAS-4	lnc-NBAS-4:4	ENSG00000233718	MYCNOS	MYCN	NA	chr2:16080683-16087129	inner
CUST_35450_PI429285431	0.92038494	A	1.1888477	A	0.830203684588415	0	lncRNA	36856-1_{1..1793}	n342525|CR601061|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5020|NULL|-1.0283100|-0.4345117	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342525|CR601061|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5020|NULL|-1.0283100|-0.4345117	chr21	 18940620	 18942412	+	NA	NA	NA	NA	CXADR	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50chr21:18930620-18952413"	NA	inner
CUST_39122_PI429285431	6.715664	P	7.0261803	P	0.806353136459814	0	lncRNA	40098-1_{1..1511}	n385705|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bxz.1||0.2090010|-0.1446449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n385705|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bxz.1||0.2090010|-0.1446449	chr9	132264675	132266185	+	NA	NA	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10"	NA	inter
LNCA_21_P0001495	0.93010056	A	0.9192988	A	1.00751530872657	0	lncRNA	TCONS_00001482	NA	NA	NA	NA	XLOC_000816	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000816), lincRNA [TCONS_00001482]"	chr1:45770290-45770231	hs|1p34.1	Agilent_HUMAN_G3V2	TCONS_00001482	TCONS_00001482	chr1	 45770231	 45770290	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35833_PI429285431	4.4367466	P	4.498851	P	0.957865900164824	0	lncRNA	37235-1_{1..480}	n344505|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_53|NULL|-1.2733300|-0.0655078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344505|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_53|NULL|-1.2733300|-0.0655078	chr16	 11477554	 11478033	+	NA	NA	NA	NA	LOC388210	NA	chr16:11467554-11484311	inter
CUST_39800_PI429285431	2.2659104	A	1.385594	A	1.84077896147282	0	lncRNA	40709-2_{3001..3951}	n406195|NR_003654|lncRNA|Homosapiens||RefGeneNoncode|NR_003654||1.6331000|-0.2757100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406195|NR_003654|lncRNA|Homosapiens||RefGeneNoncode|NR_003654||1.6331000|-0.2757100	chr15	 85177690	 85178640	+	NA	NA	NA	NA	WDR73	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.91;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20chr15:85185999-85195694"	NA	inter
CUST_19168_PI429285431	6.2509203	P	6.7288494	P	0.71800754030425	0	lncRNA	20837-1_{1..835}	lnc-GSX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-GSX2-1:1	chr4	 54782386	 54783220	+	lnc-GSX2-1	lnc-GSX2-1:1	ENSG00000249706.1	RP11-89B16.1	NA	NA	NA	inter
CUST_4328_PI429285431	2.8943777	A	2.8748262	A	1.01364431259676	0	lncRNA	4283-1_{1..838}	"transcript_id ""ENST00000548427.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548427.1"" | genecode_v17"	chr12	 74685887	 74686724	-	ENSG00000251138.2	ENST00000548427.1	RP11-81H3.2	RP11-81H3.2-002	NA	"hg19_refFlat_VENTX:range=chr10:135051419-1350538105'pad=0,hg19_refFlat_VENTX:range=chr10:135051419-1350538105'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.40"	NA	inter
CUST_49437_PI429285431	16.653133	P	16.20231	P	1.36681975057024	0	lncRNA	53239-1_{1..1340}	hg19_lincRNAsTranscripts_TCONS_l2_00022670 range=chr5:177479453-177483269 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022670 range=chr5:177479453-177483269 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	177479453	177480792	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24015_PI429285431	0.93124336	A	0.91233283	A	1.01319406409097	0	lncRNA	25568-1_{1..1084}	lnc-RBM11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RBM11-2:1	chr21	 15516078	 15517161	+	lnc-RBM11-2	lnc-RBM11-2:1	ENSG00000224905.2	AP001347.6	LIPI	NA	chr21:15506078-15526789	inner
CUST_48855_PI429285431	3.6419368	P	3.5968049	P	1.03177750639632	0	lncRNA	52691-1_{1..535}	hg19_lincRNAsTranscripts_TCONS_l2_00019632 range=chr3:180604459-180628232 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019632 range=chr3:180604459-180628232 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	180604459	180604993	-	NA	NA	NA	NA	FXR1	NA	chr3:180605458-180638232	inter
CUST_20717_PI429285431	4.3524365	P	4.037597	P	1.2438732645477	0	lncRNA	22352-1_{1..720}	lnc-MAN2C1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAN2C1-2:2	chr15	 75521879	 75522598	-	lnc-MAN2C1-2	lnc-MAN2C1-2:2	ENSG00000260660.1	RP11-69H7.2	NA	NA	NA	inter
LNCA_21_P0005103	0.92594993	A	0.9127135	A	1.00921701157221	0	lncRNA	TCONS_00012402	NA	NA	NA	NA	XLOC_005136	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005136), lincRNA [TCONS_00012402]"	chr6:3841975-3842034	hs|6p25.2	Agilent_HUMAN_G3V2	TCONS_00012402	TCONS_00012402	chr6	  3841975	  3842034	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4922_PI429285431	0.9203106	A	0.91313934	A	1.00498311326659	0	lncRNA	4865-1_{1..593}	"transcript_id ""ENST00000556016.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556016.1"" | genecode_v17"	chr14	 85669193	 85669785	-	ENSG00000259044.1	ENST00000556016.1	RP11-789A21.1	RP11-789A21.1-001	NA	NA	NA	inter
CUST_40146_PI429285431	5.4709616	P	6.0858765	P	0.652968408941809	0	lncRNA	40984-1_{1..2608}	n407773|NR_027295_2|lncRNA|Homosapiens||RefGeneNoncode|NR_027295_2||0.6614210|-0.1737606	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407773|NR_027295_2|lncRNA|Homosapiens||RefGeneNoncode|NR_027295_2||0.6614210|-0.1737606	chr17	 43697980	 43700587	+	NA	NA	NA	NA	CRHR1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40chr17:43697710-43725329"	NA	inner
CUST_2565_PI429285431	0.9093748	A	1.0467148	A	0.909193956772841	0	lncRNA	2553-1_{1..325}	"transcript_id ""ENST00000436418.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436418.1"" | genecode_v17"	chr6	 80581590	 80581914	+	ENSG00000233835.1	ENST00000436418.1	RP1-92C4.2	RP1-92C4.2-001	NA	NA	NA	inter
CUST_6832_PI429285431	1.4686773	A	1.160526	A	1.2381201296099	0	lncRNA	6780-1_{1..468}	"transcript_id ""ENST00000426418.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426418.1"" | genecode_v17"	chr21	 29011012	 29011479	+	ENSG00000234052.1	ENST00000426418.1	AP001607.1	AP001607.1-001	NA	NA	NA	inter
CUST_7745_PI429285431	8.4916115	P	8.032637	P	1.37456439958364	0	lncRNA	9373-1_{1..973}	lnc-KIAA1755-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1755-5:4	chr20	 37063840	 37064812	-	lnc-KIAA1755-5	lnc-KIAA1755-5:4	ENSG00000196756	RP4-564F22.2	NA	NA	NA	inter
CUST_21002_PI429285431	2.0509655	A	1.8785123	A	1.12697319383592	0	lncRNA	22631-1_{1..528}	lnc-STYX-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STYX-1:1	chr14	 53243580	 53244107	+	lnc-STYX-1	lnc-STYX-1:1	ENSG00000259049.1	RP11-589M4.1	STYX	NA	chr14:53233580-53241707	inner
LNCA_21_P0007867	0.9217713	A	1.4824948	A	0.677962085905506	0	lncRNA	TCONS_00021269	NA	NA	NA	NA	XLOC_009974	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009974), lincRNA [TCONS_00021269]"	chr12:1764127-1764068	hs|12p13.33	Agilent_HUMAN_G3V2	TCONS_00021269	TCONS_00021269	chr12	  1764068	  1764127	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52165_PI429285431	0.91842306	A	1.50127	A	0.667644980421316	0	lncRNA	55685-2_{3001..4399}	hg19_lincRNAsTranscripts_TCONS_l2_00017638 range=chr22:23775735-23806986 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017638 range=chr22:23775735-23806986 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 23778735	 23780133	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7514_PI429285431	2.140714	A	2.0659134	A	1.05321545724965	0	lncRNA	9154-1_{1..502}	lnc-FEZF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FEZF2-1:1	chr3	 62354867	 62355368	-	lnc-FEZF2-1	lnc-FEZF2-1:1	ENSG00000241472	RP11-204J18.3	FEZF2	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90chr3:62355347-62359190"	NA	inter
CUST_26321_PI429285431	2.1548133	A	3.2914178	P	0.454828795445192	0	lncRNA	27828-1_{1..445}	lnc-KIF20B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIF20B-1:2	chr10	 91410310	 91410754	+	lnc-KIF20B-1	lnc-KIF20B-1:2	ENSG00000232936.1	RP11-80H5.2	PANK1	NA	chr10:91400310-91405329	inter
CUST_987_PI429285431	0.8998893	A	0.88959706	A	1.00715954500253	0	lncRNA	977-1_{1..529}	"transcript_id ""ENST00000458182.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458182.1"" | genecode_v17"	chr2	104741726	104742254	-	ENSG00000228968.1	ENST00000458182.1	AC096554.1	AC096554.1-001	NA	NA	NA	inter
CUST_51778_PI429285431	1.1217141	A	1.8370118	A	0.609079435379199	0	lncRNA	55328-2_{3001..3976}	hg19_lincRNAsTranscripts_TCONS_l2_00012283 range=chr19:8784389-8790416 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012283 range=chr19:8784389-8790416 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	  8787389	  8788364	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40"	NA	inter
CUST_50120_PI429285431	0.91434354	A	0.91937244	A	0.996520300379588	0	lncRNA	53848-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00029375 range=chr9:69494689-69650121 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029375 range=chr9:69494689-69650121 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 69494689	 69497688	-	NA	NA	NA	NA	LOC100132154	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_GXYLT1:range=chr12:42481588-425384485'pad=0,hg19_refFlat_GXYLT1:range=chr12:42481588-425384485'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00chr9:69484689-69660121"	NA	inter
CUST_25260_PI429285431	0.92371655	A	0.90525186	A	1.01288100232988	0	lncRNA	26791-1_{1..213}	lnc-ZNF469-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF469-1:1	chr16	 88121457	 88121669	+	lnc-ZNF469-1	lnc-ZNF469-1:1	ENSG00000260166.1	RP11-863P13.6	NA	NA	NA	inter
CUST_11673_PI429285431	0.9042894	A	0.90538716	A	0.999239380169099	0	lncRNA	13251-1_{1..620}	lnc-CHD9-5:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD9-5:7	chr16	 52313928	 52314547	+	lnc-CHD9-5	lnc-CHD9-5:7	XLOC_011724	linc-CHD9-4	NA	NA	NA	inter
CUST_50310_PI429285431	0.90946096	A	0.8985035	A	1.00762404868503	0	lncRNA	54029-1_{1..577}	hg19_lincRNAsTranscripts_TCONS_l2_00029538 range=chr9:106039612-106087292 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029538 range=chr9:106039612-106087292 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	106039612	106040188	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42346_PI429285431	0.8943417	A	0.8894274	A	1.00341214133528	0	lncRNA	45005-1_{1..65}	ENST00000516037 ncrna:snoRNA chromosome:GRCh37:X:153121158:153121222:1 gene:ENSG00000251846 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516037 ncrna:snoRNA chromosome:GRCh37:X:153121158:153121222:1 gene:ENSG00000251846 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	153121158	153121222	+	ENSG00000251846	ENST00000516037	NA	NA	L1CAM	NA	chrX:153126971-153131222	inter
CUST_10458_PI429285431	1.0399501	A	0.94718814	A	1.06640981215668	0	lncRNA	11984-1_{1..310}	lnc-EMX2-5:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EMX2-5:9	chr10	120007211	120007520	+	lnc-EMX2-5	lnc-EMX2-5:9	XLOC_008636	linc-NANOS1-3	NA	NA	NA	inter
CUST_21738_PI429285431	4.295983	P	4.1930346	P	1.07396605903942	0	lncRNA	23348-1_{1..617}	lnc-CDK5-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK5-2:12	chr7	150712506	150713122	-	lnc-CDK5-2	lnc-CDK5-2:12	ENSG00000181652.11	ATG9B	NOS3	"hg19_refFlat_NOS3:range=chr7:150690892-1507112575'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507112575'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.40chr7:150702506-150711687"	NA	inter
CUST_15653_PI429285431	5.65158	P	5.619203	P	1.0226957429538	0	lncRNA	17346-1_{1..297}	lnc-SEC23IP-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEC23IP-1:3	chr10	122047902	122048198	+	lnc-SEC23IP-1	lnc-SEC23IP-1:3	XLOC_008642	linc-PPAPDC1A	NA	NA	NA	inter
CUST_12948_PI429285431	0.9140212	A	1.0499307	A	0.910095912442934	0	lncRNA	14576-1_{1..1836}	lnc-CRYBA4-1:39	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:39	chr22	 27113216	 27115051	+	lnc-CRYBA4-1	lnc-CRYBA4-1:39	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
CUST_30363_PI429285431	2.2019858	A	2.1009316	A	1.07255691049813	0	lncRNA	32139-1_{1..395}	n335461|AY764266|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257662|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257662|1.8528700|-0.1499449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335461|AY764266|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257662|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257662|1.8528700|-0.1499449	chr1	107937920	107938314	+	NA	NA	NA	NA	NTNG1	NA	chr1:107927920-108024475	inner
CUST_20211_PI429285431	0.90060335	A	0.89928544	A	1.00091392297405	0	lncRNA	21855-1_{1..573}	lnc-EMILIN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EMILIN2-1:1	chr18	  2950260	  2950832	+	lnc-EMILIN2-1	lnc-EMILIN2-1:1	ENSG00000265907.1	RP11-737O24.2	LPIN2	NA	chr18:2940260-2960676	inner
CUST_21075_PI429285431	5.191946	P	5.7019854	P	0.702203260436852	0	lncRNA	22701-1_{1..575}	lnc-STT3B-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STT3B-1:5	chr3	 31756112	 31756686	+	lnc-STT3B-1	lnc-STT3B-1:5	ENSG00000232490.2	OSBPL10-AS1	OSBPL10	NA	chr3:31746112-31766404	inner
CUST_46419_PI429285431	3.378895	P	3.8185592	P	0.737306203198921	0	lncRNA	50632-1_{1..1779}	"gi|302148482|ref|NR_036470.1| Homo sapiens hect domain and RLD 2 pseudogene 7 (HERC2P7), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302148482|ref|NR_036470.1| Homo sapiens hect domain and RLD 2 pseudogene 7 (HERC2P7), non-coding RNA"	Chr15	 23390722	 23392500	+	100132101	NR_036470.1	NA	NA	NA	NA	NA	inter
CUST_45557_PI429285431	4.3842263	P	4.466271	P	0.944717769711647	0	lncRNA	49956-1_{1..2220}	"gi|389616148|ref|NR_051974.1| Homo sapiens cAMP responsive element modulator (CREM), transcript variant 18, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|389616148|ref|NR_051974.1| Homo sapiens cAMP responsive element modulator (CREM), transcript variant 18, non-coding RNA"	Chr10	 35415769	 35417988	+	1390	NR_051974.1	NA	NA	NA	NA	NA	inter
CUST_16103_PI429285431	6.8359814	P	6.815277	P	1.01445466929916	0	lncRNA	17809-1_{1..885}	lnc-PKDCC-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PKDCC-2:1	chr2	 42119669	 42120553	+	lnc-PKDCC-2	lnc-PKDCC-2:1	XLOC_001441	linc-PKDCC-2	NA	NA	NA	inter
CUST_32920_PI429285431	0.91177684	A	1.0438566	A	0.912515038372534	0	lncRNA	34545-1_{1..1967}	n339593|AK124463|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2037|NULL|-0.9425970|-0.1470594	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339593|AK124463|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2037|NULL|-0.9425970|-0.1470594	chr20	 20344334	 20346300	+	NA	NA	NA	NA	C20orf26	NA	chr20:20334334-20341346	inter
LNCA_21_P0006448	0.9181701	A	0.9046888	A	1.00938832147233	0	lncRNA	ENST00000437466	NA	NA	NA	NA	XLOC_008148	NA	ENST00000437466	NA	NA	"BROAD Institute lincRNA (XLOC_008148), lincRNA [TCONS_00017055]"	chrX:41907198-41907139	hs|Xp11.4	Agilent_HUMAN_G3V2	ENST00000437466	ENST00000437466	chrX	 41907139	 41907198	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13140_PI429285431	2.2206607	A	2.5568018	A	0.79215733171945	0	lncRNA	14768-1_{1..321}	lnc-TSPY10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSPY10-2:1	chrY	  9579933	  9580253	+	lnc-TSPY10-2	lnc-TSPY10-2:1	XLOC_008290	linc-USP9Y-6	NA	NA	NA	inter
CUST_47543_PI429285431	6.0401764	P	5.874921	P	1.12136457539322	0	lncRNA	51552-2_{3001..4293}	"gi|311213902|ref|NR_027928.2| Homo sapiens CHKB-CPT1B readthrough (non-protein coding) (CHKB-CPT1B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|311213902|ref|NR_027928.2| Homo sapiens CHKB-CPT1B readthrough (non-protein coding) (CHKB-CPT1B), non-coding RNA"	Chr22	 51010290	 51011582	-	386593	NR_027928.2	NA	NA	NA	NA	NA	inter
CUST_50106_PI429285431	1.3194132	A	1.6644986	A	0.78726137343457	0	lncRNA	53836-1_{1..520}	hg19_lincRNAsTranscripts_TCONS_l2_00029318 range=chr9:67239131-67288055 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029318 range=chr9:67239131-67288055 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 67239131	 67239650	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008780	0.9205928	A	0.9075668	A	1.00906981896222	0	lncRNA	TCONS_00023783	NA	NA	NA	NA	XLOC_011578	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011578), lincRNA [TCONS_00023783]"	chr15:92346303-92346244	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00023783	TCONS_00023783	chr15	 92346244	 92346303	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012893	2.8110793	A	1.6639593	A	2.21471337598739	0	lncRNA	AK125192	NA	AK125192	NA	Hs.646924	LOC285696	uncharacterized LOC285696	NA	THC2625586	NA	"BROAD Institute lincRNA (XLOC_l2_011954), lincRNA [TCONS_l2_00022808]"	chr5:17216233-17182530	hs|5p15.1	Agilent_HUMAN_G3V2	AK125192	AK125192	chr5	 17182530	 17216233	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12869_PI429285431	1.2100539	A	0.89156926	A	1.24702003143237	0	lncRNA	14496-1_{1..431}	lnc-RAB28-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB28-3:1	chr4	 12564043	 12564473	-	lnc-RAB28-3	lnc-RAB28-3:1	XLOC_003884	linc-HS3ST1-6	NA	NA	NA	inter
CUST_42973_PI429285431	8.037493	P	8.187596	P	0.901186120888304	0	lncRNA	46117-1_{1..126}	ENST00000363365 ncrna:snoRNA chromosome:GRCh37:5:139959252:139959377:1 gene:ENSG00000200235 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363365 ncrna:snoRNA chromosome:GRCh37:5:139959252:139959377:1 gene:ENSG00000200235 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	139959252	139959377	+	ENSG00000200235	ENST00000363365	NA	NA	NA	NA	NA	inter
CUST_26605_PI429285431	0.9109344	A	0.98347676	A	0.950960709420803	0	lncRNA	28108-1_{1..450}	lnc-AC107021.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC107021.1-4:1	chr3	146307850	146308299	+	lnc-AC107021.1-4	lnc-AC107021.1-4:1	ENSG00000241457.1	PLSCR5-AS1	PLSCR5	"hg19_refFlat_PLSCR5:range=chr3:146303861-1463229995'pad=0,hg19_refFlat_PLSCR5:range=chr3:146303861-1463229995'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30chr3:146303625-146318112"	NA	inner
CUST_19642_PI429285431	1.1873981	A	0.90059733	A	1.21993203125597	0	lncRNA	21298-1_{1..341}	lnc-PDILT-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDILT-1:2	chr16	 20452816	 20453156	-	lnc-PDILT-1	lnc-PDILT-1:2	ENSG00000262995.1	CTD-2194A8.2	ACSM5	"hg19_refFlat_ACSM5:range=chr16:20422807-204517495'pad=0,hg19_refFlat_ACSM5:range=chr16:20422807-204517495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chr16:20442816-20452290"	NA	inter
CUST_236_PI429201921	4.855969	P	5.173306	P	0.802549898706607	0	lncRNA	181-3_{6001..6119}	TC22001193.hg.1	TCONS_l2_00018301-XLOC_l2_009446 // Broad TUCP // linc-CCT8L2-1 chr22:-:17075906-17082026 // chr22 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr22:-:17075906-17082026	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00018301-XLOC_l2_009446	linc-CCT8L2-1	chr22	 17075906	 17082026	-	NA	NA	NA	NA	IFI6	NA	chr1:27992572-27998724	Unknown
CUST_19545_PI429285431	0.9077128	A	0.9002723	A	1.0051706836787	0	lncRNA	21201-1_{1..681}	lnc-SERAC1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SERAC1-4:1	chr6	158251225	158251905	-	lnc-SERAC1-4	lnc-SERAC1-4:1	ENSG00000234361.1	RP11-52J3.3	SNX9	NA	chr6:158244294-158261605	inner
LNCA_33_P3628481	4.5072546	P	3.0953505	P	2.66088120001979	0	lncRNA	XR_108807	XR_108807	XR_108807	   157247	Hs.552129	MGC27345	uncharacterized protein MGC27345	NA	THC2531243	NA	"PREDICTED: Homo sapiens hypothetical protein MGC27345 (MGC27345), miscRNA [XR_108807]"	chr7:127944338-127944279	hs|7q32.1	Agilent_HUMAN_G3V2	XR_108807	XR_108807	chr7	127944279	127944338	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4314_PI429285431	2.1096349	A	1.8684251	A	1.18198342115912	0	lncRNA	4268-1_{1..565}	"transcript_id ""ENST00000546086.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546086.1"" | genecode_v17"	chr12	 68727033	 68727597	-	ENSG00000251301.2	ENST00000546086.1	RP11-81H14.2	RP11-81H14.2-006	MDM1	NA	chr12:68717033-68726161	inter
CUST_23022_PI429285431	1.7657248	A	2.0632052	A	0.813672196954395	0	lncRNA	24594-1_{1..646}	lnc-SHANK2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHANK2-6:1	chr11	 70034139	 70034784	-	lnc-SHANK2-6	lnc-SHANK2-6:1	ENSG00000254902.1	ANO1-AS1	ANO1	"hg19_refFlat_ANO1:range=chr11:69924713-700341105'pad=0,hg19_refFlat_ANO1:range=chr11:69924713-700341105'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90chr11:70024139-70035651"	NA	inter
CUST_28518_PI429285431	0.91905516	A	1.0146451	A	0.935889469703677	0	lncRNA	30187-1_{1..416}	n325863|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050846|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050846|-1.1812600|-0.5601274	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325863|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050846|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050846|-1.1812600|-0.5601274	chr10	125175218	125175633	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36840_PI429285431	0.91732824	A	0.90737814	A	1.00692072203586	0	lncRNA	38005-1_{1..852}	n345313|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_862|NULL|-1.3936700|-0.4314199	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345313|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_862|NULL|-1.3936700|-0.4314199	chr15	 75748768	 75749619	+	NA	NA	NA	NA	PTPN9	NA	chr15:75759462-75766274	inter
CUST_44286_PI429285431	7.7705584	P	7.9592404	P	0.877406926159424	0	lncRNA	48920-1_{1..3000}	"gi|228480225|ref|NR_027622.1| Homo sapiens four and a half LIM domains 1 pseudogene (LOC100128164), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|228480225|ref|NR_027622.1| Homo sapiens four and a half LIM domains 1 pseudogene (LOC100128164), transcript variant 1, non-coding RNA"	Chr3	169661772	169664771	-	100128164	NR_027622.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10"	NA	inter
CUST_34651_PI429285431	0.92443657	A	0.93796235	A	0.990668455357291	0	lncRNA	36103-1_{1..2520}	n341549|AK095808|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4020|NULL|4.0534300|-0.4153040	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341549|AK095808|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4020|NULL|4.0534300|-0.4153040	chr8	 82605892	 82608411	-	NA	NA	NA	NA	IMPA1	NA	chr8:82595892-82598589	inner
CUST_34882_PI429285431	9.142463	P	8.781842	P	1.28397845996737	0	lncRNA	36307-1_{1..2127}	n341796|AF129266|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4274|NULL|-0.4162570|-0.1114690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341796|AF129266|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4274|NULL|-0.4162570|-0.1114690	chr9	136548432	136550558	+	NA	NA	NA	NA	SARDH	"hg19_refFlat_SARDH:range=chr9:136529011-1365992955'pad=0,hg19_refFlat_SARDH:range=chr9:136529011-1365992955'pad=0 3'pad=0 strand=- repeatMasking=none,-93.80chr9:136538432-136560559"	NA	inner
CUST_42167_PI429285431	2.255896	A	0.9270363	A	2.51204045811747	0	lncRNA	44209-1_{1..66}	ENST00000579811 ncrna:miRNA chromosome:GRCh37:4:53617314:53617379:-1 gene:ENSG00000266656 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579811 ncrna:miRNA chromosome:GRCh37:4:53617314:53617379:-1 gene:ENSG00000266656 gene_biotype:miRNA transcript_biotype:miRNA	chr4	 53617314	 53617379	-	ENSG00000266656	ENST00000579811	NA	NA	LOC100288413	NA	chr4:53609684-53617807	inner
CUST_48689_PI429285431	1.387867	A	1.5030535	A	0.923262951013351	0	lncRNA	52530-1_{1..485}	hg19_lincRNAsTranscripts_TCONS_l2_00013877 range=chr2:106986278-106992912 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013877 range=chr2:106986278-106992912 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	106986278	106986762	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6120_PI429285431	0.90893835	A	1.1482416	A	0.847154347027266	0	lncRNA	6046-1_{1..577}	"transcript_id ""ENST00000578490.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578490.1"" | genecode_v17"	chr18	 22253127	 22253703	+	ENSG00000263553.1	ENST00000578490.1	RP11-449D8.2	RP11-449D8.2-001	NA	NA	NA	inter
CUST_5272_PI429285431	0.90316737	A	1.257632	A	0.78215984113706	0	lncRNA	5212-1_{1..566}	"transcript_id ""ENST00000560097.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560097.1"" | genecode_v17"	chr15	 81952823	 81953388	-	ENSG00000259692.1	ENST00000560097.1	RP11-499F3.2	RP11-499F3.2-001	NA	NA	NA	inter
CUST_5808_PI429285431	0.9249734	A	0.904873	A	1.01403004569013	0	lncRNA	5734-1_{1..271}	"transcript_id ""ENST00000580360.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580360.1"" | genecode_v17"	chr17	 30655460	 30655730	+	ENSG00000265139.1	ENST00000580360.1	RP11-227G15.2	RP11-227G15.2-001	RHBDL3	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-59.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60chr17:30645460-30651680"	NA	inner
CUST_29633_PI429285431	8.345379	P	8.217558	P	1.09264216292204	0	lncRNA	31394-1_{1..338}	n333195|AF442150|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079729|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079729|-0.9604930|-0.0970767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333195|AF442150|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079729|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079729|-0.9604930|-0.0970767	chr2	 27430438	 27430775	-	NA	NA	NA	NA	SLC5A6	NA	chr2:27422455-27435175	inter
CUST_12042_PI429285431	0.91540706	A	0.9074074	A	1.00556034341799	0	lncRNA	13627-1_{1..415}	lnc-MKRN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MKRN3-1:1	chr15	 23874165	 23874579	+	lnc-MKRN3-1	lnc-MKRN3-1:1	XLOC_011169	linc-C15orf2-13	NA	NA	NA	inter
CUST_33700_PI429285431	0.9134521	A	0.9063086	A	1.00496377580301	0	lncRNA	35261-1_{1..1463}	n340477|CR603521|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2938|NULL|-1.1306000|-0.2465568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340477|CR603521|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2938|NULL|-1.1306000|-0.2465568	chr5	 59063927	 59065389	+	NA	NA	NA	NA	PDE4D	"hg19_refFlat_PDE4D:range=chr5:58270491-590643355'pad=0,hg19_refFlat_PDE4D:range=chr5:58270491-590643355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80chr5:59053927-59075390"	NA	inner
CUST_48183_PI429285431	3.7100644	P	3.644355	P	1.04659944571065	0	lncRNA	52047-1_{1..3000}	"gi|410170046|ref|XR_172449.1| PREDICTED: Homo sapiens uncharacterized LOC101060781 (LOC101060781), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170046|ref|XR_172449.1| PREDICTED: Homo sapiens uncharacterized LOC101060781 (LOC101060781), misc_RNA"	NA	NA	NA	NA	NA	XR_172449.1	NA	NA	NA	NA	NA	Unknown
CUST_10949_PI429285431	5.0913634	P	5.7214956	P	0.646117206264922	0	lncRNA	12490-1_{1..495}	lnc-PCTP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCTP-1:1	chr17	 53930004	 53930498	+	lnc-PCTP-1	lnc-PCTP-1:1	XLOC_012256	linc-ANKFN1	NA	NA	NA	inter
CUST_43638_PI429285431	0.9086878	A	1.5995817	A	0.619469904839863	0	lncRNA	48397-1_{1..843}	"gi|300068989|ref|NR_033946.1| Homo sapiens hCG1654703 (LOC646268), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300068989|ref|NR_033946.1| Homo sapiens hCG1654703 (LOC646268), non-coding RNA"	Chr1	158101834	158102676	-	646268	NR_033946.1	NA	NA	NA	NA	NA	inter
CUST_51446_PI429285431	2.240836	A	1.5790284	A	1.58206360189875	0	lncRNA	55023-1_{1..749}	hg19_lincRNAsTranscripts_TCONS_l2_00010092 range=chr16:30309613-30346385 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010092 range=chr16:30309613-30346385 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 30309613	 30310361	-	NA	NA	NA	NA	CD2BP2	NA	chr16:30347721-30356385	inter
CUST_12723_PI429285431	2.1194396	A	0.91044176	A	2.31176995192987	0	lncRNA	14342-2_{3001..3210}	lnc-AL078633.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AL078633.1-1:1	chr20	 60813528	 60813737	+	lnc-AL078633.1-1	lnc-AL078633.1-1:1	XLOC_013597	linc-OSBPL2	OSBPL2	NA	chr20:60813580-60821355	inter
CUST_46067_PI429285431	5.079138	P	5.0525436	P	1.01860478530269	0	lncRNA	50340-1_{1..2971}	"gi|302191714|ref|NR_036479.1| Homo sapiens transmembrane protein 198B, pseudogene (TMEM198B), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|302191714|ref|NR_036479.1| Homo sapiens transmembrane protein 198B, pseudogene (TMEM198B), transcript variant 4, non-coding RNA"	Chr12	 56223392	 56226362	+	440104	NR_036479.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20"	NA	inter
CUST_9404_PI429285431	0.92492855	A	1.2310445	A	0.808816340843987	0	lncRNA	10907-1_{1..1017}	lnc-CD55-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD55-1:1	chr1	207559551	207560567	+	lnc-CD55-1	lnc-CD55-1:1	XLOC_000540	linc-CR2-2	NA	NA	NA	inter
LNCA_21_P0002369	0.9967123	A	0.9278593	A	1.04888244873288	0	lncRNA	ENST00000445199	NA	NA	NA	NA	XLOC_001894	NA	ENST00000445199	NA	NA	"BROAD Institute lincRNA (XLOC_001894), lincRNA [TCONS_00004051]"	chr2:230990193-230990252	hs|2q36.3	Agilent_HUMAN_G3V2	ENST00000445199	ENST00000445199	chr2	230990193	230990252	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11149_PI429285431	1.144413	A	0.92103755	A	1.16746188503123	0	lncRNA	12707-1_{1..2045}	lnc-AC093726.6.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC093726.6.1-1:4	chr7	154795672	154797716	+	lnc-AC093726.6.1-1	lnc-AC093726.6.1-1:4	XLOC_006301	linc-HTR5A-1	PAXIP1	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30chr7:154785672-154794682"	NA	inter
CUST_48305_PI429285431	6.0916123	P	6.7147126	P	0.64927416052766	0	lncRNA	52163-1_{1..1373}	hg19_lincRNAsTranscripts_TCONS_l2_00000133 range=chr1:16974501-16976773 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000133 range=chr1:16974501-16976773 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16974501	 16975873	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45868_PI429285431	2.1031325	A	2.069998	A	1.02323285954354	0	lncRNA	50196-1_{1..3000}	"gi|253735742|ref|NR_028025.1| Homo sapiens CREB/ATF bZIP transcription factor (CREBZF), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|253735742|ref|NR_028025.1| Homo sapiens CREB/ATF bZIP transcription factor (CREBZF), transcript variant 3, non-coding RNA"	Chr11	 85368608	 85371607	-	58487	NR_028025.1	NA	NA	NA	NA	NA	inter
CUST_48498_PI429285431	1.9063789	A	1.3802859	A	1.44002414334955	0	lncRNA	52351-1_{1..1314}	hg19_lincRNAsTranscripts_TCONS_l2_00000940 range=chr1:247338627-247349215 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000940 range=chr1:247338627-247349215 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	247338627	247339940	+	NA	NA	NA	NA	ZNF124	"hg19_refFlat_PEX5:range=chr12:7342974-73628195'pad=0,hg19_refFlat_PEX5:range=chr12:7342974-73628195'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30chr1:247328627-247335318"	NA	inter
LNCA_21_P0002964	2.0796869	A	1.7915046	A	1.22110080211086	0	lncRNA	TCONS_00006040	NA	NA	NA	NA	XLOC_002680	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002680), lincRNA [TCONS_00006040]"	chr3:61298945-61299004	hs|3p14.2	Agilent_HUMAN_G3V2	TCONS_00006040	TCONS_00006040	chr3	 61298945	 61299004	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49190_PI429285431	0.9221668	A	0.9092986	A	1.00895945432867	0	lncRNA	53014-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00020804 range=chr4:147143417-147152283 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020804 range=chr4:147143417-147152283 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	147143417	147146416	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51604_PI429285431	5.6404824	P	5.3044047	P	1.26232001572699	0	lncRNA	55170-1_{1..503}	hg19_lincRNAsTranscripts_TCONS_l2_00010687 range=chr17:29335468-29350639 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010687 range=chr17:29335468-29350639 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 29335468	 29335970	+	NA	NA	NA	NA	RNF135	NA	chr17:29325468-29326929	inter
CUST_12245_PI429285431	7.6702633	P	7.931806	P	0.834195422021612	0	lncRNA	13849-1_{1..468}	lnc-CNOT6-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CNOT6-4:1	chr5	179722035	179722502	+	lnc-CNOT6-4	lnc-CNOT6-4:1	XLOC_004678	linc-CNOT6-3	MAPK9	NA	chr5:179712035-179719071	inter
CUST_40574_PI429285431	4.7900786	P	4.7711296	P	1.01322108164785	0	lncRNA	41328-1_{1..3000}	n410019|NR_036447|lncRNA|Homosapiens||RefGeneNoncode|NR_036447||14.5527000|-0.0789384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410019|NR_036447|lncRNA|Homosapiens||RefGeneNoncode|NR_036447||14.5527000|-0.0789384	chr16	 16411465	 16414464	+	NA	NA	NA	NA	LOC100288368	NA	chr16:16418988-16419785	inter
CUST_20145_PI429285431	5.7650175	P	6.573719	P	0.570895462146495	0	lncRNA	21790-1_{1..1388}	lnc-RPS25-1:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS25-1:16	chr11	118899932	118901319	-	lnc-RPS25-1	lnc-RPS25-1:16	ENSG00000137700.10	SLC37A4	SLC37A4	NA	chr11:118895061-118901616	inner
CUST_37166_PI429285431	6.3972077	P	6.574397	P	0.884424379952697	0	lncRNA	38283-1_{1..651}	n345602|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1151|NULL|-1.3574000|-0.2127178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345602|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1151|NULL|-1.3574000|-0.2127178	chr3	156849514	156850164	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37770_PI429285431	7.7219744	P	7.9879103	P	0.831659048776236	0	lncRNA	38867-1_{1..1970}	n346279|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1829|NULL|-1.6015800|-0.2567108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346279|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1829|NULL|-1.6015800|-0.2567108	chr8	 22554737	 22556706	-	NA	NA	NA	NA	EGR3	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-59.50chr8:22545174-22550815"	NA	inter
CUST_6202_PI429285431	1.7395778	A	1.5604047	A	1.13223474376207	0	lncRNA	6128-1_{1..552}	"transcript_id ""ENST00000589617.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589617.1"" | genecode_v17"	chr18	 53728340	 53728891	-	ENSG00000267399.1	ENST00000589617.1	RP11-456O19.5	RP11-456O19.5-001	NA	NA	NA	inter
CUST_15186_PI429285431	12.022349	P	12.023966	P	0.998879808892037	0	lncRNA	16851-1_{1..1233}	lnc-TSC22D1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSC22D1-1:4	chr13	 44979750	 44980982	-	lnc-TSC22D1-1	lnc-TSC22D1-1:4	XLOC_010588	linc-CCDC122-4	SERP2	NA	chr13:44969750-44971850	inter
CUST_51208_PI429285431	2.3197374	A	2.3441596	A	0.983214297461354	0	lncRNA	54826-1_{1..266}	hg19_lincRNAsTranscripts_TCONS_l2_00008526 range=chr15:30800741-30805095 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008526 range=chr15:30800741-30805095 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 30800741	 30801006	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45890_PI429285431	0.907657	A	1.1830175	A	0.826243830913058	0	lncRNA	50207-3_{6001..9000}	"gi|403048748|ref|NR_073143.1| Homo sapiens progesterone receptor (PGR), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|403048748|ref|NR_073143.1| Homo sapiens progesterone receptor (PGR), transcript variant 6, non-coding RNA"	Chr11	100906355	100909354	-	5241	NR_073143.2	NA	NA	NA	NA	NA	inter
CUST_49075_PI429285431	1.2093593	A	1.0133996	A	1.14548589972287	0	lncRNA	52900-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00020386 range=chr4:6202500-6239906 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020386 range=chr4:6202500-6239906 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	  6202500	  6205499	+	NA	NA	NA	NA	JAKMIP1	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-58.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40chr4:6192500-6202318"	NA	inter
CUST_25557_PI429285431	1.0071311	A	0.957628	A	1.03490841429071	0	lncRNA	27086-1_{1..704}	lnc-BASP1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BASP1-5:1	chr5	 16621317	 16622020	+	lnc-BASP1-5	lnc-BASP1-5:1	ENSG00000250415.1	CTC-461F20.1	FAM134B	NA	chr5:16611317-16617118	inter
LNCA_21_P0013055	0.9294926	A	1.1578544	A	0.853603620276364	0	lncRNA	TCONS_l2_00024564	NA	NA	NA	NA	XLOC_l2_012844	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012844), lincRNA [TCONS_l2_00024564]"	chr6:1529151-1529092	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_l2_00024564	TCONS_l2_00024564	chr6	  1529092	  1529151	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003085	3.0894637	P	3.8211765	P	0.602188557486637	0	lncRNA	TCONS_00006371	NA	NA	NA	NA	XLOC_002987	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002987), lincRNA [TCONS_00006371]"	chr3:194567111-194567170	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00006371	TCONS_00006371	chr3	194567111	194567170	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014495	4.460943	P	4.3229094	P	1.10040423720208	0	lncRNA	ENST00000524012	XR_110085	XR_110085	NA	Hs.730423	LOC100505775	NA	ENST00000524012	THC2624426	NA	"PREDICTED: Homo sapiens hypothetical LOC100505775 (LOC100505775), miscRNA [XR_110085]"	chr8:47840330-47840389	hs|8q11.1	Agilent_HUMAN_G3V2	ENST00000524012	ENST00000524012	chr8	 47840330	 47840389	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26652_PI429285431	7.0022945	P	6.812173	P	1.14085979204814	0	lncRNA	28152-1_{1..826}	lnc-DLEU7-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DLEU7-3:2	chr13	 51746124	 51746949	-	lnc-DLEU7-3	lnc-DLEU7-3:2	ENSG00000226792.2	LINC00371	NA	NA	NA	inter
CUST_1287_PI429285431	0.96427643	A	0.9764588	A	0.991591376491975	0	lncRNA	1277-1_{1..559}	"transcript_id ""ENST00000420000.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420000.2"" | genecode_v17"	chr3	  3292371	  3292929	-	ENSG00000223727.2	ENST00000420000.2	AC026188.1	AC026188.1-002	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60"	NA	inter
CUST_16647_PI429285431	1.2001371	A	1.1092452	A	1.06502839866683	0	lncRNA	18349-1_{1..685}	lnc-KIAA1217-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1217-1:1	chr10	 23874677	 23875361	+	lnc-KIAA1217-1	lnc-KIAA1217-1:1	XLOC_008413	linc-KIAA1217	NA	NA	NA	inter
CUST_43326_PI429285431	2.0509295	A	1.3016163	A	1.68099239771129	0	lncRNA	48157-1_{1..3000}	ENST00000454051 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:29969382:29992343:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>ENST00000454051 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:29969382:29992343:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	chrHSCHR6_MHC_QBL	 29969382	 29972381	-	ENSG00000235814	ENST00000454051	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80"	NA	Unknown
CUST_45755_PI429285431	0.90312254	A	0.9057005	A	0.998214689859887	0	lncRNA	50102-1_{1..544}	"gi|310120624|ref|XR_109061.1| PREDICTED: Homo sapiens uncharacterized LOC100506238 (LOC100506238), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310120624|ref|XR_109061.1| PREDICTED: Homo sapiens uncharacterized LOC100506238 (LOC100506238), misc_RNA"	Chr11	  7244164	  7244707	+	100506238	XR_109061.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0012993	0.9311857	A	0.9222304	A	1.00622664641141	0	lncRNA	ENST00000447012	NA	BC035411	NA	Hs.654588	XLOC_l2_012081	NA	ENST00000447012	THC2498079	NA	"BROAD Institute lincRNA (XLOC_l2_012081), lincRNA [TCONS_l2_00023773]"	chr5:70299000-70298941	hs|5q13.2	Agilent_HUMAN_G3V2	ENST00000447012	ENST00000447012	chr5	 70298941	 70299000	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44906_PI429285431	5.193274	P	3.5459173	P	3.13259160877548	0	lncRNA	49424-1_{1..3000}	"gi|381342473|ref|NR_046478.1| Homo sapiens FK506 binding protein 14, 22 kDa (FKBP14), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|381342473|ref|NR_046478.1| Homo sapiens FK506 binding protein 14, 22 kDa (FKBP14), transcript variant 2, non-coding RNA"	Chr7	 30050199	 30053198	-	55033	NR_046478.1	NA	NA	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.81;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0,hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40"	NA	inter
CUST_32672_PI429285431	2.47268	A	0.897483	A	2.97976178492205	0	lncRNA	34323-1_{1..1491}	n339299|AK022464|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1731|NULL|-0.8271490|-0.2613265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339299|AK022464|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1731|NULL|-0.8271490|-0.2613265	chr16	 78837034	 78838524	+	NA	NA	NA	NA	WWOX	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10chr16:78827034-78848208"	NA	inner
CUST_45425_PI429285431	7.1128287	P	7.2669926	P	0.898653027696212	0	lncRNA	49846-2_{3001..6000}	"gi|221554512|ref|NR_026677.1| Homo sapiens MIR600 host gene (non-protein coding) (MIR600HG), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|221554512|ref|NR_026677.1| Homo sapiens MIR600 host gene (non-protein coding) (MIR600HG), non-coding RNA"	Chr9	125874773	125877772	-	81571	NR_026677.1	NA	NA	NA	NA	NA	inter
CUST_27118_PI429285431	0.9143487	A	0.90682316	A	1.00522993544839	0	lncRNA	28652-1_{1..273}	n324232|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327605|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327605|-1.0691800|-0.3469668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324232|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327605|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327605|-1.0691800|-0.3469668	chr7	 17685697	 17685969	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12309_PI429285431	1.4397365	A	1.4404178	A	0.999527870314197	0	lncRNA	13923-1_{1..371}	lnc-RP11-82I10.1.1-12:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-82I10.1.1-12:1	chr15	 97767137	 97767507	-	lnc-RP11-82I10.1.1-12	lnc-RP11-82I10.1.1-12:1	XLOC_011595	linc-RGMA-16	NA	NA	NA	inter
CUST_32725_PI429285431	9.243827	P	9.170492	P	1.05214606368681	0	lncRNA	34366-1_{1..751}	n339354|AL162034|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1786|NULL|-1.0608000|-0.2109940	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339354|AL162034|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1786|NULL|-1.0608000|-0.2109940	chr3	 49022283	 49023033	+	NA	NA	NA	NA	ARIH2	NA	chr3:49012283-49022974	inner
CUST_47124_PI429285431	5.041912	P	5.1654096	P	0.917959494249899	0	lncRNA	51205-1_{1..2267}	"gi|378744167|ref|NR_046384.1| Homo sapiens Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) (PAF1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378744167|ref|NR_046384.1| Homo sapiens Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) (PAF1), transcript variant 3, non-coding RNA"	Chr19	 39876269	 39878535	-	54623	NR_046384.1	NA	NA	NA	NA	NA	inter
CUST_24466_PI429285431	1.5871824	A	1.4039893	A	1.13539406074784	0	lncRNA	26019-1_{1..894}	lnc-GLYATL2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLYATL2-2:3	chr11	 58746601	 58747494	-	lnc-GLYATL2-2	lnc-GLYATL2-2:3	ENSG00000255240.1	RP11-142C4.6	NA	NA	NA	inter
CUST_29039_PI429285431	1.1454755	A	0.9122182	A	1.17548595384874	0	lncRNA	30768-1_{1..580}	n326529|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027727|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027727|-1.3365100|-0.4455116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326529|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027727|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027727|-1.3365100|-0.4455116	chr1	 91089903	 91090482	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35685_PI429285431	3.013833	P	2.5725112	A	1.35784782052712	0	lncRNA	37106-1_{1..3000}	n342847|AL832582|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5350|NULL|-1.1187100|-0.3027009	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342847|AL832582|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5350|NULL|-1.1187100|-0.3027009	chr8	103838595	103841594	+	NA	NA	NA	NA	AZIN1	"hg19_refFlat_AZIN1:range=chr8:103840795-1038558805'pad=0,hg19_refFlat_AZIN1:range=chr8:103840795-1038558805'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00chr8:103838536-103876397"	NA	inner
CUST_12139_PI429285431	0.9205886	A	0.9158304	A	1.00330357773917	0	lncRNA	13737-1_{1..470}	lnc-TNFSF15-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFSF15-2:7	chr9	117419104	117419573	-	lnc-TNFSF15-2	lnc-TNFSF15-2:7	XLOC_007832	linc-DFNB31-1	LOC100505478	NA	chr9:117428714-117429174	inter
CUST_29901_PI429285431	5.5861926	P	5.702256	P	0.922701943135746	0	lncRNA	31664-1_{1..213}	n333986|M16440|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194448|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194448|1.6904200|-0.0476088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333986|M16440|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194448|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194448|1.6904200|-0.0476088	chr19	 45810704	 45810916	-	NA	NA	NA	NA	MARK4	NA	chr19:45800704-45808541	inner
CUST_46085_PI429285431	6.1838436	P	5.4600115	P	1.65156311074341	0	lncRNA	50353-4_{9001..12000}	"gi|398303861|ref|NR_073055.1| Homo sapiens solute carrier family 16, member 7 (monocarboxylic acid transporter 2) (SLC16A7), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|398303861|ref|NR_073055.1| Homo sapiens solute carrier family 16, member 7 (monocarboxylic acid transporter 2) (SLC16A7), transcript variant 4, non-coding RNA"	Chr12	 60092118	 60095117	+	9194	NR_073055.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00"	NA	inter
CUST_14_PI429201921	2.8021924	A	3.3060298	A	0.705228459052646	0	lncRNA	15-1_{1..851}	TC05002369.hg.1	 TCONS_l2_00022305-XLOC_l2_011579 // Broad TUCP // linc-ISL1-1 chr5:+:50265354-50265902 // chr5 // 100 // 100 // 0 // --- // 0///TCONS_l2_00023390-XLOC_l2_011579 // Broad TUCP // linc-ISL1-1 chr5:+:50265050-50265801 // chr5 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr5:+:50265050-50265801	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00023390-XLOC_l2_011579	linc-ISL1-1	chr5	 50265050	 50265801	+	NA	NA	NA	NA	XKR6	NA	chr8:10910157-10934599	Unknown
CUST_26783_PI429285431	5.3968444	P	5.4895196	P	0.937782199542205	0	lncRNA	28288-1_{1..475}	n323841|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057245|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057245|-0.9786610|-0.3069367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323841|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057245|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057245|-0.9786610|-0.3069367	chrX	 73080926	 73081400	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49861_PI429285431	5.2379103	P	5.029522	P	1.15539671663707	0	lncRNA	53613-1_{1..264}	hg19_lincRNAsTranscripts_TCONS_l2_00026686 range=chr7:72334660-72338274 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026686 range=chr7:72334660-72338274 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 72334660	 72334923	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40994_PI429285431	0.9070893	A	1.4772129	A	0.6735590801395	0	lncRNA	41662-1_{1..978}	n411168|NR_038996|lncRNA|Homosapiens||RefGeneNoncode|NR_038996||-1.2125800|-0.1987879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n411168|NR_038996|lncRNA|Homosapiens||RefGeneNoncode|NR_038996||-1.2125800|-0.1987879	chr12	109489845	109490822	-	NA	NA	NA	NA	USP30	"hg19_refFlat_USP30:range=chr12:109490484-1095237365'pad=0,hg19_refFlat_USP30:range=chr12:109490484-1095237365'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.10chr12:109490380-109501770"	NA	inner
CUST_10113_PI429285431	1.4948983	A	1.7689856	A	0.826973325327004	0	lncRNA	11638-1_{1..638}	lnc-NVL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NVL-2:1	chr1	224624523	224625160	-	lnc-NVL-2	lnc-NVL-2:1	XLOC_001227	linc-WDR26-3	WDR26	NA	chr1:224614523-224622001	inter
CUST_50440_PI429285431	6.2335577	P	5.974347	P	1.19682374192052	0	lncRNA	54143-1_{1..550}	hg19_lincRNAsTranscripts_TCONS_l2_00030483 range=chrX:48239521-48240390 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030483 range=chrX:48239521-48240390 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 48239521	 48240070	-	NA	NA	NA	NA	SSX4	NA	chrX:48229521-48250390	inter
CUST_38227_PI429285431	6.989762	P	8.066725	P	0.474025639481245	0	lncRNA	39290-1_{1..211}	n381626|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001mur.1||0.4562870|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381626|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001mur.1||0.4562870|-1.0000000	chr11	 33720002	 33720212	-	NA	NA	NA	NA	CD59	NA	chr11:33724556-33731943	inner
CUST_24729_PI429285431	2.49913	A	1.8007452	A	1.6226870614573	0	lncRNA	26275-1_{1..481}	lnc-GINS1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GINS1-1:6	chr20	 25655533	 25656013	+	lnc-GINS1-1	lnc-GINS1-1:6	ENSG00000213742.2	RP4-694B14.5	ZNF337	NA	chr20:25650496-25665538	inner
CUST_29672_PI429285431	3.6009772	P	2.7994525	A	1.74294216720203	0	lncRNA	31434-1_{1..419}	n333316|AY166787|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084884|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084884|1.0833200|-0.0893761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333316|AY166787|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084884|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084884|1.0833200|-0.0893761	chr19	 44660391	 44660809	+	NA	NA	NA	NA	ZNF226	NA	chr19:44669215-44670810	inner
CUST_19712_PI429285431	0.90973246	A	0.909291	A	1.00030604357611	0	lncRNA	21369-1_{1..346}	lnc-A2LD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-A2LD1-1:1	chr13	101133374	101133719	-	lnc-A2LD1-1	lnc-A2LD1-1:1	ENSG00000234650.1	PCCA-AS1	PCCA	NA	chr13:101123374-101143411	inner
CUST_11418_PI429285431	0.9063048	A	1.1303728	A	0.856147929911811	0	lncRNA	12985-1_{1..455}	lnc-RP11-181C3.1.1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-181C3.1.1-1:7	chr12	 98897538	 98897992	-	lnc-RP11-181C3.1.1-1	lnc-RP11-181C3.1.1-1:7	XLOC_010167	linc-CDK17-4	NA	NA	NA	inter
CUST_35121_PI429285431	0.9126715	A	1.0098069	A	0.934887452456893	0	lncRNA	36526-1_{1..3000}	n342089|AL833558|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4571|NULL|-0.9392120|-0.4404287	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342089|AL833558|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4571|NULL|-0.9392120|-0.4404287	chr6	 96656044	 96659043	+	NA	NA	NA	NA	FUT9	NA	chr6:96646044-96663488	inner
CUST_47422_PI429285431	5.3488297	P	5.2242174	P	1.09021471644753	0	lncRNA	51460-2_{3001..6000}	"gi|223972655|ref|NR_026943.1| Homo sapiens uncharacterized LOC642852 (LOC642852), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223972655|ref|NR_026943.1| Homo sapiens uncharacterized LOC642852 (LOC642852), non-coding RNA"	Chr21	 46710967	 46713966	+	642852	NR_026943.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0006146	0.9162316	A	0.90195435	A	1.00994536525554	0	lncRNA	TCONS_00016775	NA	NA	NA	NA	XLOC_007354	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007703), lincRNA [TCONS_00016775]"	chr9:38965036-38967973	hs|9p13.1	Agilent_HUMAN_G3V2	TCONS_00016775	TCONS_00016775	chr9	 38965036	 38967973	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17586_PI429285431	0.8978352	A	0.89503694	A	1.00194148828199	0	lncRNA	19312-1_{1..622}	lnc-GNAZ-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNAZ-1:1	chr22	 23396368	 23396989	+	lnc-GNAZ-1	lnc-GNAZ-1:1	XLOC_014169	linc-GNAZ	RTDR1	NA	chr22:23401593-23406939	inter
CUST_12459_PI429285431	2.2875183	A	3.058565	A	0.585992172979236	0	lncRNA	14071-1_{1..569}	lnc-RBMY1B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RBMY1B-1:3	chrY	 23331842	 23332410	+	lnc-RBMY1B-1	lnc-RBMY1B-1:3	XLOC_008299	linc-RBMY1B	NA	NA	NA	inter
LNCA_21_P0010539	3.270252	P	4.0512776	P	0.581952940606024	0	lncRNA	TCONS_l2_00000436	NA	NA	NA	NA	XLOC_l2_000324	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000324), lincRNA [TCONS_l2_00000436]"	chr1:98674953-98675012	hs|1p21.3	Agilent_HUMAN_G3V2	TCONS_l2_00000436	TCONS_l2_00000436	chr1	 98674953	 98675012	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45214_PI429285431	4.6760526	P	5.1181817	P	0.736047562699301	0	lncRNA	49676-1_{1..1630}	"gi|336455057|ref|NR_038877.1| Homo sapiens uncharacterized LOC286189 (LOC286189), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336455057|ref|NR_038877.1| Homo sapiens uncharacterized LOC286189 (LOC286189), non-coding RNA"	Chr8	 69215703	 69217332	-	286189	NR_038877.1	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20"	NA	inter
CUST_6809_PI429285431	1.4795824	A	2.2862802	A	0.571688906313901	0	lncRNA	6757-1_{1..977}	"transcript_id ""ENST00000441759.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441759.1"" | genecode_v17"	chr21	 23872924	 23873900	-	ENSG00000234034.1	ENST00000441759.1	AP000959.2	AP000959.2-001	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20"	NA	inter
CUST_6440_PI429285431	0.9070344	A	0.89407265	A	1.00902488133479	0	lncRNA	6381-1_{1..677}	"transcript_id ""ENST00000589511.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589511.1"" | genecode_v17"	chr19	 31658422	 31659098	+	ENSG00000267777.1	ENST00000589511.1	CTC-439O9.3	CTC-439O9.3-001	NA	NA	NA	inter
CUST_35036_PI429285431	3.324831	P	3.2917469	P	1.02319711391895	0	lncRNA	36448-1_{1..3000}	n341978|AL133569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4459|NULL|-0.1638380|-0.3483007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341978|AL133569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4459|NULL|-0.1638380|-0.3483007	chr12	 82906455	 82909454	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-27.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80"	NA	inter
CUST_14839_PI429285431	6.1559606	P	6.16601	P	0.993058491071615	0	lncRNA	16500-1_{1..275}	lnc-TGDS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGDS-1:1	chr13	 95201424	 95201698	-	lnc-TGDS-1	lnc-TGDS-1:1	XLOC_010693	linc-DCT-2	NA	NA	NA	inter
CUST_43126_PI429285431	0.918879	A	0.9102594	A	1.00599253526626	0	lncRNA	47940-1_{1..431}	ENST00000574649 havana:lincRNA chromosome:GRCh37:HSCHR20_1_CTG1:17795253:17795683:-1 gene:ENSG00000262517 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000574649 havana:lincRNA chromosome:GRCh37:HSCHR20_1_CTG1:17795253:17795683:-1 gene:ENSG00000262517 gene_biotype:lincRNA transcript_biotype:lincRNA	chrHSCHR20_1_CTG1	 17795253	 17795683	-	ENSG00000262517	ENST00000574649	NA	NA	NA	NA	NA	Unknown
CUST_8533_PI429285431	1.0294361	A	1.3481886	A	0.801762863169678	0	lncRNA	10094-1_{1..3000}	lnc-RUNDC3B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RUNDC3B-1:1	chr7	 87208000	 87210999	+	lnc-RUNDC3B-1	lnc-RUNDC3B-1:1	ENSG00000249009	ENST00000505724	ABCB1	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40chr7:87198000-87224789"	NA	inner
CUST_24933_PI429285431	4.102605	P	4.0794053	P	1.01621079867349	0	lncRNA	26473-1_{1..551}	lnc-FAM153C-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FAM153C-4:2	chr5	177390828	177391378	+	lnc-FAM153C-4	lnc-FAM153C-4:2	ENSG00000249684.1	RP11-423H2.3	NA	NA	NA	inter
CUST_13582_PI429285431	0.9125783	A	1.4812157	A	0.67425330814249	0	lncRNA	15223-1_{1..1679}	lnc-NUDT12-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUDT12-3:1	chr5	103227033	103228711	-	lnc-NUDT12-3	lnc-NUDT12-3:1	XLOC_004945	linc-NUDT12-5	NA	NA	NA	inter
CUST_40239_PI429285431	5.406167	P	4.040475	P	2.57699904043631	0	lncRNA	41057-1_{1..2354}	n408138|NR_028085|lncRNA|Homosapiens||RefGeneNoncode|NR_028085||4.9241200|-0.2997475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408138|NR_028085|lncRNA|Homosapiens||RefGeneNoncode|NR_028085||4.9241200|-0.2997475	chr4	186320693	186323046	-	NA	NA	NA	NA	C4orf47	"hg19_refFlat_ANKRD37:range=chr4:186318078-1863211715'pad=0,hg19_refFlat_ANKRD37:range=chr4:186318078-1863211715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00chr4:186350545-186357139"	NA	inner
CUST_28181_PI429285431	3.308793	P	3.4754305	P	0.890916729437164	0	lncRNA	29808-1_{1..579}	n325461|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322747|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322747|-1.0740800|-0.4003739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325461|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322747|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322747|-1.0740800|-0.4003739	chr2	  6370536	  6371114	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32225_PI429285431	0.9191199	A	0.9152937	A	1.00265563972294	0	lncRNA	33917-1_{1..675}	n338798|AF075086|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1221|NULL|0.3281530|-0.3519318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338798|AF075086|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1221|NULL|0.3281530|-0.3519318	chr2	 42487061	 42487735	+	NA	NA	NA	NA	EML4	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40chr2:42477061-42497735"	NA	inner
CUST_10805_PI429285431	2.043288	A	0.9249794	A	2.17092306587722	0	lncRNA	12342-1_{1..691}	lnc-BAMBI-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BAMBI-1:1	chr10	 29046289	 29046979	+	lnc-BAMBI-1	lnc-BAMBI-1:1	XLOC_008424	linc-LYZL1-6	NA	NA	NA	inter
LNCA_21_P0007282	0.9249203	A	0.9125146	A	1.00863605337148	0	lncRNA	TCONS_00019499	NA	NA	NA	NA	XLOC_009300	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009300), lincRNA [TCONS_00019499]"	chr11:119737736-119737795	hs|11q23.3	Agilent_HUMAN_G3V2	TCONS_00019499	TCONS_00019499	chr11	119737736	119737795	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15960_PI429285431	0.9017072	A	1.6470983	A	0.596506142827217	0	lncRNA	17657-1_{1..281}	lnc-PSMB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PSMB2-1:1	chr1	 36130734	 36131014	-	lnc-PSMB2-1	lnc-PSMB2-1:1	XLOC_000783	linc-PSMB2	NA	NA	NA	inter
CUST_39766_PI429285431	6.8248587	P	6.564572	P	1.19771669757658	0	lncRNA	40683-1_{1..1941}	n405953|NR_003228|lncRNA|Homosapiens||RefGeneNoncode|NR_003228||6.8667000|-0.1044980	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405953|NR_003228|lncRNA|Homosapiens||RefGeneNoncode|NR_003228||6.8667000|-0.1044980	chr16	 90038987	 90040927	+	NA	NA	NA	NA	DBNDD1	NA	chr16:90071279-90077195	inter
CUST_48983_PI429285431	8.164139	P	8.482926	P	0.801743690380375	0	lncRNA	52820-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00019097 range=chr3:195663403-195673039 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019097 range=chr3:195663403-195673039 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	195666403	195669402	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4033_PI429285431	3.8024697	P	4.5402822	P	0.599647885126641	0	lncRNA	3995-1_{1..567}	"transcript_id ""ENST00000526795.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526795.1"" | genecode_v17"	chr11	 82783124	 82783690	+	ENSG00000246067.2	ENST00000526795.1	RP11-113K21.5	RP11-113K21.5-003	RAB30	NA	chr11:82773124-82782884	inter
CUST_48108_PI429285431	3.09232	P	3.234333	P	0.906253772056331	0	lncRNA	51981-1_{1..1859}	"gi|310115550|ref|XR_113199.1| PREDICTED: Homo sapiens uncharacterized LOC648570 (LOC648570), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310115550|ref|XR_113199.1| PREDICTED: Homo sapiens uncharacterized LOC648570 (LOC648570), misc_RNA"	NA	NA	NA	NA	NA	XR_113199.1	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20"	NA	Unknown
LNCA_21_P0007066	10.450239	P	10.449514	P	1.00050265799612	0	lncRNA	TCONS_00018746	NA	NA	NA	NA	XLOC_008504	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008504), lincRNA [TCONS_00018746]"	chr10:70829935-70829994	hs|10q22.1	Agilent_HUMAN_G3V2	TCONS_00018746	TCONS_00018746	chr10	 70829935	 70829994	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11181_PI429285431	1.0592766	A	0.8948729	A	1.12070276931227	0	lncRNA	12738-1_{1..415}	lnc-KIAA1429-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1429-1:2	chr8	 95650265	 95650679	-	lnc-KIAA1429-1	lnc-KIAA1429-1:2	XLOC_007162	linc-KIAA1429-1	ESRP1	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-18.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-23.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10chr8:95653364-95660636"	NA	inter
CUST_11981_PI429285431	0.9182909	A	0.91990584	A	0.998881235176745	0	lncRNA	13561-1_{1..458}	lnc-NSUN2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NSUN2-1:4	chr5	  6702671	  6703128	-	lnc-NSUN2-1	lnc-NSUN2-1:4	XLOC_004725	linc-NSUN2-3	NA	NA	NA	inter
CUST_33767_PI429285431	3.8644648	P	1.1216209	A	6.6938856220177	0	lncRNA	35320-1_{1..2237}	n340547|CR624187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3009|NULL|-1.1695800|-0.3721973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340547|CR624187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3009|NULL|-1.1695800|-0.3721973	chr5	 90664552	 90666788	+	NA	NA	NA	NA	ARRDC3	NA	chr5:90654552-90676789	inner
CUST_40384_PI429285431	6.423912	P	6.612116	P	0.877697680605298	0	lncRNA	41178-1_{1..1113}	n409224|NR_033381_2|lncRNA|Homosapiens||RefGeneNoncode|NR_033381_2||1.6837700|-0.2422753	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409224|NR_033381_2|lncRNA|Homosapiens||RefGeneNoncode|NR_033381_2||1.6837700|-0.2422753	chrX	  2527305	  2528417	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14803_PI429285431	6.3074875	P	5.799648	P	1.42191921310108	0	lncRNA	16464-1_{1..1168}	lnc-UQCRFS1-9:21	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UQCRFS1-9:21	chr19	 28262572	 28263739	-	lnc-UQCRFS1-9	lnc-UQCRFS1-9:21	XLOC_013282	linc-ZNF681-4	NA	NA	NA	inter
CUST_5793_PI429285431	1.7990303	A	2.0093992	A	0.864316195673978	0	lncRNA	5715-1_{1..1284}	"transcript_id ""ENST00000578929.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578929.1"" | genecode_v17"	chr17	 25641669	 25642952	+	ENSG00000264469.1	ENST00000578929.1	RP11-173M1.8	RP11-173M1.8-001	WSB1	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-94.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20chr17:25631669-25640645"	NA	inter
CUST_10947_PI429285431	3.6910434	P	4.2547016	P	0.676584391360426	0	lncRNA	12488-1_{1..243}	lnc-LYZL1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYZL1-5:1	chr10	 29386642	 29386884	+	lnc-LYZL1-5	lnc-LYZL1-5:1	XLOC_008427	linc-LYZL1-3	NA	NA	NA	inter
CUST_47296_PI429285431	2.5670295	A	0.9073974	A	3.15935948009839	0	lncRNA	51363-2_{3001..3610}	"gi|224028227|ref|NR_026958.1| Homo sapiens long intergenic non-protein coding RNA 494 (LINC00494), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224028227|ref|NR_026958.1| Homo sapiens long intergenic non-protein coding RNA 494 (LINC00494), non-coding RNA"	Chr20	 46991654	 46992263	+	284749	NR_026958.1	NA	NA	NA	NA	NA	inter
CUST_22198_PI429285431	2.3774004	A	3.1485825	A	0.585937178947359	0	lncRNA	23798-1_{1..572}	lnc-RP11-404P21.6.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-404P21.6.1-3:1	chr14	 96700295	 96700866	-	lnc-RP11-404P21.6.1-3	lnc-RP11-404P21.6.1-3:1	ENSG00000259036.1	RP11-404P21.1	BDKRB2	NA	chr14:96690295-96710438	inner
CUST_41379_PI429285431	6.3311725	P	6.497543	P	0.891081626919413	0	lncRNA	42475-1_{1..100}	ENST00000384856 ncrna:miRNA chromosome:GRCh37:7:127721913:127722012:1 gene:ENSG00000207588 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384856 ncrna:miRNA chromosome:GRCh37:7:127721913:127722012:1 gene:ENSG00000207588 gene_biotype:miRNA transcript_biotype:miRNA	chr7	127721913	127722012	+	ENSG00000207588	ENST00000384856	NA	NA	SND1	NA	chr7:127711913-127732012	inner
CUST_31382_PI429285431	0.92352194	A	0.9848466	A	0.958383742265014	0	lncRNA	33160-1_{1..461}	n337848|AF075070|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|231|NULL|-1.1604300|-0.3022094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337848|AF075070|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|231|NULL|-1.1604300|-0.3022094	chr1	 33750115	 33750575	+	NA	NA	NA	NA	ZNF362	NA	chr1:33740115-33760576	inner
CUST_44117_PI429285431	0.9264407	A	0.90043956	A	1.01818600432245	0	lncRNA	48783-1_{1..1470}	"gi|201860259|ref|NR_024144.1| Homo sapiens ghrelin opposite strand/antisense RNA (GHRLOS), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|201860259|ref|NR_024144.1| Homo sapiens ghrelin opposite strand/antisense RNA (GHRLOS), transcript variant 2, non-coding RNA"	Chr3	 10322636	 10324105	+	100126793	NR_024144.2	NA	NA	NA	"hg19_refFlat_GHRL:range=chr3:10327559-103345975'pad=0,hg19_refFlat_GHRL:range=chr3:10327559-103345975'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20"	NA	inter
CUST_48772_PI429285431	0.9129517	A	0.9047798	A	1.00568040209144	0	lncRNA	52610-1_{1..273}	hg19_lincRNAsTranscripts_TCONS_l2_00015045 range=chr2:196434365-196439098 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015045 range=chr2:196434365-196439098 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	196434365	196434637	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45046_PI429285431	0.99286556	A	0.98907435	A	1.00263132239016	0	lncRNA	49542-1_{1..3000}	"gi|298566296|ref|NR_033766.1| Homo sapiens forkhead box P2 (FOXP2), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298566296|ref|NR_033766.1| Homo sapiens forkhead box P2 (FOXP2), transcript variant 7, non-coding RNA"	Chr7	113726365	113729364	+	93986	NR_033766.1	NA	NA	NA	NA	NA	inter
CUST_7512_PI429285431	9.115659	P	9.212866	P	0.934841055762732	0	lncRNA	9152-1_{1..559}	lnc-MKLN1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MKLN1-2:1	chr7	131617784	131618342	+	lnc-MKLN1-2	lnc-MKLN1-2:1	ENSG00000243416	AC009518.4	NA	NA	NA	inter
CUST_52031_PI429285431	0.93241876	A	0.9225554	A	1.00686018417068	0	lncRNA	55561-1_{1..468}	hg19_lincRNAsTranscripts_TCONS_l2_00017159 range=chr21:19093368-19110972 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017159 range=chr21:19093368-19110972 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 19093368	 19093835	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33101_PI429285431	0.92483157	A	0.9265901	A	0.998781822469943	0	lncRNA	34703-1_{1..1054}	n339791|AL512751|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2238|NULL|-0.7874510|-0.0902394	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339791|AL512751|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2238|NULL|-0.7874510|-0.0902394	chr4	  1349358	  1350411	+	NA	NA	NA	NA	KIAA1530	NA	chr4:1341104-1360361	inner
CUST_48088_PI429285431	0.91529745	A	0.92093563	A	0.996099538069219	0	lncRNA	51964-1_{1..1230}	"gi|410170144|ref|XR_112813.3| PREDICTED: Homo sapiens uncharacterized LOC100507336, transcript variant 2 (LOC100507336), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170144|ref|XR_112813.3| PREDICTED: Homo sapiens uncharacterized LOC100507336, transcript variant 2 (LOC100507336), misc_RNA"	NA	NA	NA	NA	NA	XR_112813.3	NA	NA	NA	NA	NA	Unknown
CUST_3999_PI429285431	2.1295648	A	2.8794484	A	0.594651533438266	0	lncRNA	3960-1_{1..622}	"transcript_id ""ENST00000567925.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567925.1"" | genecode_v17"	chr11	 68870961	 68871582	+	ENSG00000260895.1	ENST00000567925.1	RP11-554A11.7	RP11-554A11.7-001	NA	NA	NA	inter
LNCA_21_P0014171	0.91441065	A	0.9178372	A	0.997627714854989	0	lncRNA	XR_108684	XR_108684	XR_108684	NA	NA	LOC100506935	uncharacterized LOC100506935	NA	THC2517752	NA	"PREDICTED: Homo sapiens hypothetical LOC100506935 (LOC100506935), miscRNA [XR_108684]"	chr6:24709881-24709822	hs|6p22.3	Agilent_HUMAN_G3V2	XR_108684	XR_108684	chr6	 24709822	 24709881	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23_PI429201921	4.187643	P	4.371125	P	0.880575127519819	0	lncRNA	24-1_{1..957}	TC0Y000343.hg.1	TCONS_l2_00030955-XLOC_l2_015966 // Broad TUCP // linc-BPY2B-8 chrY:-:28732669-28733627 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:28732669-28733627	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00030955-XLOC_l2_015966	linc-BPY2B-8	chrY	 28732669	 28733627	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_147_PI429285431	0.9199126	A	0.90904427	A	1.00756179938442	0	lncRNA	137-1_{1..2077}	"transcript_id ""ENST00000423197.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000423197.1"" | genecode_v17"	chr1	  4472111	  4474187	+	ENSG00000235054.1	ENST00000423197.1	RP5-1166F10.1	RP5-1166F10.1-001	NA	NA	NA	inter
CUST_22369_PI429285431	0.8983978	A	0.9007114	A	0.998397619867187	0	lncRNA	23963-1_{1..715}	lnc-WDR16-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR16-4:1	chr17	  9373076	  9373790	+	lnc-WDR16-4	lnc-WDR16-4:1	ENSG00000225751.2	AC087501.1	STX8	NA	chr17:9363076-9383331	inner
CUST_7231_PI429285431	1.3752395	A	2.4141726	A	0.486687254996478	0	lncRNA	7797-1_{1..314}	"transcript_id ""ENST00000517201.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517201.1"" | genecode_v17"	chr6	 53280092	 53280405	-	ENSG00000253010.1	ENST00000517201.1	RN7SKP256	RN7SKP256-201	NA	NA	NA	inter
CUST_36554_PI429285431	6.437957	P	6.4440255	P	0.995802470691234	0	lncRNA	37750-1_{1..1343}	n345052|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_601|NULL|-1.2942900|-0.3102143	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345052|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_601|NULL|-1.2942900|-0.3102143	chr9	 82106893	 82108235	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24119_PI429285431	4.641164	P	4.8512206	P	0.864503314335775	0	lncRNA	25669-1_{1..222}	lnc-RP11-432B6.3.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-432B6.3.1-2:1	chr3	159486363	159486584	-	lnc-RP11-432B6.3.1-2	lnc-RP11-432B6.3.1-2:1	ENSG00000241211.1	IQCJ-SCHIP1-AS1	SCHIP1	NA	chr3:159476363-159496401	inner
LNCA_21_P0014532	0.9246124	A	0.9236792	A	1.00064705419821	0	lncRNA	XR_110225	XR_110225	XR_110225	NA	NA	LOC100287415	NA	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100287415 (LOC100287415), miscRNA [XR_110225]"	chr14:75745728-75745669	hs|14q24.3	Agilent_HUMAN_G3V2	XR_110225	XR_110225	chr14	 75745669	 75745728	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28764_PI429285431	1.139848	A	1.5093215	A	0.774064934029304	0	lncRNA	30472-1_{1..889}	n326170|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092798|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092798|-1.1599700|-0.2909125	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326170|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092798|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092798|-1.1599700|-0.2909125	chr1	233159711	233160599	-	NA	NA	NA	NA	PCNXL2	"hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50chr1:233149711-233176369"	NA	inner
CUST_13147_PI429285431	3.9595	P	4.3116465	P	0.783417629934874	0	lncRNA	14773-1_{1..484}	lnc-NRXN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NRXN3-1:1	chr14	 80412299	 80412782	+	lnc-NRXN3-1	lnc-NRXN3-1:1	XLOC_010883	linc-TSHR-2	NA	NA	NA	inter
CUST_39746_PI429285431	0.92031986	A	0.9568926	A	0.974968328973137	0	lncRNA	40669-1_{1..3000}	n405875|NR_003099|lncRNA|Homosapiens||RefGeneNoncode|NR_003099||7.6274800|-0.2633420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405875|NR_003099|lncRNA|Homosapiens||RefGeneNoncode|NR_003099||7.6274800|-0.2633420	chr7	 64363619	 64366618	+	NA	NA	NA	NA	ZNF273	NA	chr7:64363620-64391955	inter
CUST_45098_PI429285431	1.7178997	A	1.6333423	A	1.06036238612942	0	lncRNA	49582-1_{1..1129}	"gi|310120116|ref|XR_108785.1| PREDICTED: Homo sapiens uncharacterized LOC100507538 (LOC100507538), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310120116|ref|XR_108785.1| PREDICTED: Homo sapiens uncharacterized LOC100507538 (LOC100507538), misc_RNA"	Chr7	147368791	147369919	+	100507538	XR_108785.1	NA	NA	NA	NA	NA	inter
CUST_35258_PI429285431	0.90963036	A	0.96791077	A	0.960408175691098	0	lncRNA	36659-1_{1..1529}	n342264|CR625262|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4754|NULL|-1.1587200|-0.2256964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342264|CR625262|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4754|NULL|-1.1587200|-0.2256964	chr22	 21803800	 21805328	-	NA	NA	NA	NA	HIC2	NA	chr22:21793800-21805752	inner
CUST_29966_PI429285431	10.101263	P	9.681082	P	1.33809542122507	0	lncRNA	31732-1_{1..263}	n334184|S47380|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000215648|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000215648|1.0556200|-0.1202912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334184|S47380|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000215648|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000215648|1.0556200|-0.1202912	chr4	123748445	123748707	+	NA	NA	NA	NA	NUDT6	NA	chr4:123813799-123823464	inner
CUST_4802_PI429285431	0.9195364	A	0.9174362	A	1.00145680782367	0	lncRNA	4746-1_{1..280}	"transcript_id ""ENST00000553747.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553747.1"" | genecode_v17"	chr14	 48235889	 48236168	-	ENSG00000259129.1	ENST00000553747.1	LINC00648	LINC00648-003	NA	NA	NA	inter
LNCA_33_P3364964	6.5146403	P	6.614711	P	0.932987268903594	0	lncRNA	XR_110585	XR_110585	XR_110585	100129596	Hs.639990	LOC100129596	uncharacterized LOC100129596	NA	THC2489577	NA	"PREDICTED: Homo sapiens hypothetical LOC100129596 (LOC100129596), miscRNA [XR_110585]"	chr8:146045756-146045697	hs|8q24.3	Agilent_HUMAN_G3V2	XR_110585	XR_110585	chr8	146045697	146045756	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_101_PI429285431	0.92405355	A	1.8699946	A	0.519090845422875	0	lncRNA	93-1_{1..491}	"transcript_id ""ENST00000477740.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000477740.1"" | genecode_v17"	chr1	    92230	    92720	-	ENSG00000238009.2	ENST00000477740.1	RP11-34P13.7	RP11-34P13.7-003	NA	NA	NA	inter
CUST_25593_PI429285431	6.58751	P	6.64188	P	0.96301488325783	0	lncRNA	27123-1_{1..648}	lnc-PANK3-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PANK3-8:1	chr5	166730128	166730775	-	lnc-PANK3-8	lnc-PANK3-8:1	ENSG00000254297.1	CTC-286N12.1	ODZ2	NA	chr5:166720128-166740377	inner
CUST_52156_PI429285431	1.4852898	A	2.821612	A	0.396028949639418	0	lncRNA	55680-1_{1..292}	hg19_lincRNAsTranscripts_TCONS_l2_00018349 range=chr22:23715835-23719258 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018349 range=chr22:23715835-23719258 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 23715835	 23716126	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3279_PI429285431	1.1403943	A	0.90581846	A	1.17656077125129	0	lncRNA	3257-1_{1..603}	"transcript_id ""ENST00000522828.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522828.1"" | genecode_v17"	chr8	120233334	120233936	-	ENSG00000253972.1	ENST00000522828.1	RP11-4K16.2	RP11-4K16.2-005	MAL2	NA	chr8:120223334-120257913	inner
CUST_5127_PI429285431	0.8981212	A	0.8963786	A	1.00120860805561	0	lncRNA	5067-1_{1..251}	"transcript_id ""ENST00000563502.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563502.1"" | genecode_v17"	chr15	 30462766	 30463016	-	ENSG00000259906.1	ENST00000563502.1	RP11-932O9.4	RP11-932O9.4-002	NA	NA	NA	inter
CUST_41824_PI429285431	2.3286695	A	2.8548665	A	0.694382743448717	0	lncRNA	43424-1_{1..97}	ENST00000385216 ncrna:miRNA chromosome:GRCh37:2:189162219:189162315:1 gene:ENSG00000207951 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385216 ncrna:miRNA chromosome:GRCh37:2:189162219:189162315:1 gene:ENSG00000207951 gene_biotype:miRNA transcript_biotype:miRNA	chr2	189162219	189162315	+	ENSG00000207951	ENST00000385216	NA	NA	GULP1	NA	chr2:189157390-189172315	inter
CUST_15958_PI429285431	4.3387737	P	4.4380903	P	0.933475070961047	0	lncRNA	17655-1_{1..582}	lnc-POLR2B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLR2B-2:2	chr4	 58293471	 58294052	+	lnc-POLR2B-2	lnc-POLR2B-2:2	XLOC_003548	linc-LPHN3-7	NA	NA	NA	inter
LNCA_21_P0007860	0.9305079	A	0.92070776	A	1.00681606375411	0	lncRNA	TCONS_00021248	NA	NA	NA	NA	XLOC_009937	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009937), lincRNA [TCONS_00021248]"	chr12:126651466-126655877	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00021248	TCONS_00021248	chr12	126651466	126655877	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49832_PI429285431	6.2307634	P	6.1366925	P	1.06737779210946	0	lncRNA	53590-1_{1..448}	hg19_lincRNAsTranscripts_TCONS_l2_00025977 range=chr7:65223132-65225024 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025977 range=chr7:65223132-65225024 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 65223132	 65223579	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2489_PI429285431	1.1188575	A	0.9167795	A	1.15035408611528	0	lncRNA	2481-1_{1..191}	"transcript_id ""ENST00000450310.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450310.1"" | genecode_v17"	chr6	 19690056	 19690246	-	ENSG00000237404.1	ENST00000450310.1	RP3-471C18.2	RP3-471C18.2-002	NA	NA	NA	inter
CUST_29175_PI429285431	3.5948882	P	3.829121	P	0.85013696692972	0	lncRNA	30919-1_{1..480}	n326687|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007692|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007692|-1.2005500|-0.3558299	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326687|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007692|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007692|-1.2005500|-0.3558299	chr1	 20442174	 20442653	+	NA	NA	NA	NA	PLA2G2D	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.41;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00chr1:20438432-20446008"	NA	inner
LNCA_19_P00319557	1.9803132	A	2.3378944	A	0.780472010542907	0	lncRNA	ENST00000444792	NA	NA	NA	NA	XLOC_l2_008760	NA	ENST00000444792	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008760), lincRNA [TCONS_l2_00016849]"	chr20:11251272-11251213	hs|20p12.2	Agilent_HUMAN_G3V2	ENST00000444792	ENST00000444792	chr20	 11251213	 11251272	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5506_PI429285431	1.8028495	A	2.331623	A	0.693143756353299	0	lncRNA	5437-1_{1..660}	"transcript_id ""ENST00000568893.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568893.1"" | genecode_v17"	chr16	 33350764	 33351423	-	ENSG00000261466.2	ENST00000568893.1	RP11-23E10.2	RP11-23E10.2-001	NA	NA	NA	inter
CUST_9239_PI429285431	0.91386896	A	0.9145837	A	0.999504702684399	0	lncRNA	10749-1_{1..566}	lnc-NICN1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NICN1-1:2	chr3	 49591474	 49592039	-	lnc-NICN1-1	lnc-NICN1-1:2	ENSG00000226913	XLOC_003118	BSN	NA	chr3:49591922-49601773	inter
CUST_25025_PI429285431	5.7180996	P	6.0449376	P	0.797281998184859	0	lncRNA	26565-1_{1..575}	lnc-TAF1C-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TAF1C-1:3	chr16	 84230488	 84231062	-	lnc-TAF1C-1	lnc-TAF1C-1:3	ENSG00000250685.3	RP11-486L19.2	TAF1C	"hg19_refFlat_ADAD2:range=chr16:84224837-842305805'pad=0,hg19_refFlat_ADAD2:range=chr16:84224837-842305805'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.20chr16:84220488-84220662"	NA	inner
CUST_31674_PI429285431	4.7872806	P	4.8049774	P	0.987808439651754	0	lncRNA	33422-1_{1..1674}	n338198|BC045765|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|590|NULL|7.7047400|-0.0745887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338198|BC045765|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|590|NULL|7.7047400|-0.0745887	chr22	 51133239	 51134912	+	NA	NA	NA	NA	SHANK3	NA	chr22:51123239-51169026	inner
CUST_17025_PI429285431	0.9185226	A	0.92003906	A	0.998949422270168	0	lncRNA	18736-1_{1..691}	lnc-MEOX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MEOX1-1:1	chr17	 41767934	 41768624	-	lnc-MEOX1-1	lnc-MEOX1-1:1	XLOC_012482	linc-MEOX1	NA	NA	NA	inter
CUST_766_PI429285431	0.92315537	A	0.9623108	A	0.973224517323465	0	lncRNA	757-1_{1..596}	"transcript_id ""ENST00000417751.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417751.1"" | genecode_v17"	chr2	 13850656	 13851251	-	ENSG00000230448.1	ENST00000417751.1	LINC00276	LINC00276-002	NA	NA	NA	inter
CUST_45897_PI429285431	0.8995122	A	0.9014653	A	0.998647130196206	0	lncRNA	50209-1_{1..3000}	"gi|376319258|ref|NR_046356.1| Homo sapiens glutamate receptor, ionotropic, AMPA 4 (GRIA4), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|376319258|ref|NR_046356.1| Homo sapiens glutamate receptor, ionotropic, AMPA 4 (GRIA4), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NR_046356.1	NA	NA	NA	NA	NA	Unknown
CUST_36673_PI429285431	0.91106737	A	0.8990148	A	1.00838919866431	0	lncRNA	37859-1_{1..1857}	n345165|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_714|NULL|-1.5725700|-0.4225102	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345165|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_714|NULL|-1.5725700|-0.4225102	chr12	  3900216	  3902072	-	NA	NA	NA	NA	PARP11	NA	chr12:3918027-3920010	inter
CUST_21357_PI429285431	1.4926571	A	2.7135816	A	0.429007715721282	0	lncRNA	22981-1_{1..560}	lnc-DNAH8-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DNAH8-3:1	chr6	 38449843	 38450402	+	lnc-DNAH8-3	lnc-DNAH8-3:1	ENSG00000226533.1	BTBD9-AS1	BTBD9	NA	chr6:38439843-38460307	inner
CUST_2561_PI429285431	4.876355	P	4.858693	P	1.01231761000298	0	lncRNA	2549-1_{1..387}	"transcript_id ""ENST00000449463.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449463.1"" | genecode_v17"	chr6	 79314184	 79314570	-	ENSG00000230309.1	ENST00000449463.1	RP3-390M24.1	RP3-390M24.1-001	NA	NA	NA	inter
CUST_13243_PI429285431	5.6234903	P	6.3390303	P	0.608977149344583	0	lncRNA	14873-1_{1..456}	lnc-TMEM106A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM106A-1:1	chr17	 41393607	 41394062	+	lnc-TMEM106A-1	lnc-TMEM106A-1:1	XLOC_012209	linc-ARL4D-2	NA	NA	NA	inter
CUST_8475_PI429285431	4.5565753	P	5.185539	P	0.646640736023524	0	lncRNA	10040-1_{1..939}	lnc-RRM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RRM1-1:1	chr11	  4100490	  4101428	+	lnc-RRM1-1	lnc-RRM1-1:1	ENSG00000248835	ENST00000512808	STIM1	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70chr11:4090490-4110803"	NA	inner
CUST_23225_PI429285431	1.0943296	A	0.9119364	A	1.13476471777897	0	lncRNA	24797-1_{1..647}	lnc-DHRS7B-5:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHRS7B-5:16	chr17	 20861615	 20862261	+	lnc-DHRS7B-5	lnc-DHRS7B-5:16	ENSG00000233098.3	RP11-344E13.3	NA	NA	NA	inter
CUST_18363_PI429285431	3.1348126	A	2.6401842	A	1.4089577982194	0	lncRNA	20090-1_{1..1643}	lnc-IGFL3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-IGFL3-2:1	chr19	 46706097	 46707739	-	lnc-IGFL3-2	lnc-IGFL3-2:1	ENSG00000256017	AC006262.2	NA	NA	NA	inter
CUST_4334_PI429285431	0.9247672	A	0.91300416	A	1.00818684846402	0	lncRNA	4289-1_{1..567}	"transcript_id ""ENST00000552167.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552167.1"" | genecode_v17"	chr12	 79939310	 79939876	+	ENSG00000257474.1	ENST00000552167.1	RP11-359M6.1	RP11-359M6.1-001	NA	NA	NA	inter
CUST_23923_PI429285431	4.019602	P	3.707571	P	1.24145416706364	0	lncRNA	25480-1_{1..399}	lnc-UBAP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBAP2-3:1	chr9	 33738286	 33738684	-	lnc-UBAP2-3	lnc-UBAP2-3:1	ENSG00000233776.1	RP11-384P7.6	NA	NA	NA	inter
CUST_40851_PI429285431	12.976042	P	12.885541	P	1.06473986699993	0	lncRNA	41554-1_{1..2728}	n410623|NR_037861_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037861_8||-1.1366900|-0.3232108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410623|NR_037861_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037861_8||-1.1366900|-0.3232108	chr6	  3592443	  3595170	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41017_PI429285431	1.1768534	A	1.194127	A	0.988098245771404	0	lncRNA	41677-1_{1..2409}	n411623|NR_040090_3|lncRNA|Homosapiens||RefGeneNoncode|NR_040090_3||-0.1186410|-0.2451889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411623|NR_040090_3|lncRNA|Homosapiens||RefGeneNoncode|NR_040090_3||-0.1186410|-0.2451889	chr6	  3267200	  3269608	+	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50chr6:3269207-3280475"	NA	inner
LNCA_21_P0004984	3.0709324	P	3.499833	P	0.742827638522334	0	lncRNA	TCONS_00012037	NA	NA	NA	NA	XLOC_005571	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005571), lincRNA [TCONS_00012037]"	chr6:1099955-1097096	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_00012037	TCONS_00012037	chr6	  1097096	  1099955	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39197_PI429285431	0.9124871	A	0.91653013	A	0.997201508253491	0	lncRNA	40172-1_{1..624}	n385954|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009wjz.1||-0.7103470|-0.1789136	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385954|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009wjz.1||-0.7103470|-0.1789136	chr1	147907097	147907720	-	NA	NA	NA	NA	PPIAL4A	"hg19_refFlat_FAM91A1:range=chr8:124780943-1248249445'pad=0,hg19_refFlat_FAM91A1:range=chr8:124780943-1248249445'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50chr1:147907427-147941980"	NA	inter
LNCA_21_P0012196	0.91758686	A	0.9029032	A	1.0102299089063	0	lncRNA	THC2650344	NA	NA	NA	NA	XLOC_l2_009182	NA	NA	THC2650344	NA	"BROAD Institute lincRNA (XLOC_l2_009182), lincRNA [TCONS_l2_00017188]"	chr21:029815185-029815126	hs|21q21.3	Agilent_HUMAN_G3V2	THC2650344	THC2650344	chr21	 29815126	 29815185	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35773_PI429285431	0.8976195	A	0.90177125	M	0.997126363014922	0	lncRNA	37189-2_{3001..3944}	n344459|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_7|NULL|-1.2969800|-0.2712783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344459|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_7|NULL|-1.2969800|-0.2712783	chr5	133766647	133767590	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36868_PI429285431	5.5222316	P	5.4271	P	1.06816283946239	0	lncRNA	38027-1_{1..1736}	n345337|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_886|NULL|-1.3929800|-0.2393409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345337|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_886|NULL|-1.3929800|-0.2393409	chr16	 81417176	 81418911	+	NA	NA	NA	NA	GAN	NA	chr16:81407176-81413803	inter
CUST_23411_PI429285431	0.90232337	A	0.90200275	A	1.00022226154547	0	lncRNA	24979-1_{1..448}	lnc-ZNF727-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZNF727-4:1	chr7	 63610065	 63610512	+	lnc-ZNF727-4	lnc-ZNF727-4:1	ENSG00000229881.1	RP11-321E8.4	NA	NA	NA	inter
CUST_42748_PI429285431	0.9215097	A	0.90728307	A	1.0099099298128	0	lncRNA	45703-1_{1..129}	ENST00000516049 ncrna:snoRNA chromosome:GRCh37:14:42063666:42063794:1 gene:ENSG00000251858 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516049 ncrna:snoRNA chromosome:GRCh37:14:42063666:42063794:1 gene:ENSG00000251858 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 42063666	 42063794	+	ENSG00000251858	ENST00000516049	NA	NA	NA	NA	NA	inter
CUST_42181_PI429285431	3.6019506	P	3.671781	P	0.952749994617719	0	lncRNA	44238-1_{1..77}	ENST00000401279 ncrna:miRNA chromosome:GRCh37:X:145078716:145078792:-1 gene:ENSG00000216098 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401279 ncrna:miRNA chromosome:GRCh37:X:145078716:145078792:-1 gene:ENSG00000216098 gene_biotype:miRNA transcript_biotype:miRNA	chrX	145078716	145078792	-	ENSG00000216098	ENST00000401279	NA	NA	NA	NA	NA	inter
CUST_47051_PI429285431	0.9158505	A	0.91788656	A	0.9985897061519	0	lncRNA	51140-1_{1..3000}	"gi|224451055|ref|NR_027049.1| Homo sapiens zinc finger family member 788 (ZNF788), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|224451055|ref|NR_027049.1| Homo sapiens zinc finger family member 788 (ZNF788), non-coding RNA"	Chr19	 12203078	 12206077	+	388507	NR_027049.1	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20"	NA	inter
CUST_38006_PI429285431	0.90585285	A	0.89411557	A	1.00816884697333	0	lncRNA	39092-1_{1..2776}	n377580|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029943||-0.0045276|-0.2268882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377580|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029943||-0.0045276|-0.2268882	chr6	   800680	   803455	+	NA	NA	NA	NA	NA	"hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
CUST_43317_PI429285431	1.3647008	A	1.2502205	A	1.08258499721005	0	lncRNA	48148-1_{1..726}	ENST00000601050 havana:lincRNA chromosome:GRCh37:10:10988011:10993929:-1 gene:ENSG00000229240 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000601050 havana:lincRNA chromosome:GRCh37:10:10988011:10993929:-1 gene:ENSG00000229240 gene_biotype:lincRNA transcript_biotype:lincRNA	chr10	 10988011	 10988736	-	ENSG00000229240	ENST00000601050	NA	NA	NA	NA	NA	inter
LNCA_21_P0014210	0.91622406	A	0.9023158	A	1.00968709023741	0	lncRNA	XR_108871	XR_108871	XR_108871	NA	NA	LOC100506689	uncharacterized LOC100506689	NA	THC2681173	NA	"PREDICTED: Homo sapiens hypothetical LOC100506689 (LOC100506689), miscRNA [XR_108871]"	chr8:102473259-102473200	hs|8q22.3	Agilent_HUMAN_G3V2	XR_108871	XR_108871	chr8	102473200	102473259	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49768_PI429285431	1.1539395	A	1.079448	A	1.05298982812056	0	lncRNA	53530-1_{1..256}	hg19_lincRNAsTranscripts_TCONS_l2_00026573 range=chr7:55744425-55746044 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026573 range=chr7:55744425-55746044 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 55744425	 55744680	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44297_PI429285431	0.89935124	A	0.8971829	A	1.00150410879614	0	lncRNA	48930-1_{1..2529}	"gi|166091438|ref|NR_004053.2| Homo sapiens SOX2 overlapping transcript (non-protein coding) (SOX2-OT), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|166091438|ref|NR_004053.2| Homo sapiens SOX2 overlapping transcript (non-protein coding) (SOX2-OT), non-coding RNA"	Chr3	181328122	181330650	+	347689	NR_004053.3	NA	NA	NA	NA	NA	inter
CUST_21087_PI429285431	1.8533171	A	1.1175368	A	1.6652979234962	0	lncRNA	22712-1_{1..476}	lnc-C2CD4A-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2CD4A-8:1	chr15	 61488058	 61488533	+	lnc-C2CD4A-8	lnc-C2CD4A-8:1	ENSG00000259481.1	RP11-39M21.1	RORA	NA	chr15:61478058-61498137	inner
CUST_36944_PI429285431	3.230561	P	3.600436	P	0.773849542820202	0	lncRNA	38099-1_{1..561}	n345415|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_964|NULL|-1.6361800|-0.2855880	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345415|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_964|NULL|-1.6361800|-0.2855880	chr22	 39573965	 39574525	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43404_PI429285431	10.462112	P	9.911642	P	1.46456274227724	0	lncRNA	48216-2_{3001..4296}	"gi|381214344|ref|NR_046474.1| Homo sapiens solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 (SLC9A1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|381214344|ref|NR_046474.1| Homo sapiens solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 (SLC9A1), transcript variant 2, non-coding RNA"	Chr1	 27428300	 27429595	-	6548	NR_046474.1	NA	NA	NA	NA	NA	inter
CUST_12849_PI429285431	0.9142112	A	0.90134025	A	1.00896137756336	0	lncRNA	14475-1_{1..1411}	lnc-CD1B-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD1B-2:6	chr1	158110288	158111698	-	lnc-CD1B-2	lnc-CD1B-2:6	XLOC_001054	linc-CD5L-1	NA	NA	NA	inter
CUST_41833_PI429285431	7.9857373	P	7.8783455	P	1.07727889855763	0	lncRNA	43447-1_{1..83}	ENST00000408210 ncrna:miRNA chromosome:GRCh37:8:87670098:87670180:-1 gene:ENSG00000221137 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408210 ncrna:miRNA chromosome:GRCh37:8:87670098:87670180:-1 gene:ENSG00000221137 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 87670098	 87670180	-	ENSG00000221137	ENST00000408210	NA	NA	CNGB3	NA	chr8:87660098-87680180	inner
CUST_48681_PI429285431	6.3230467	P	6.7505856	P	0.743529093699847	0	lncRNA	52522-2_{3001..3078}	hg19_lincRNAsTranscripts_TCONS_l2_00013854 range=chr2:102578558-102603782 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013854 range=chr2:102578558-102603782 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	102581558	102581635	+	NA	NA	NA	NA	IL1R2	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60chr2:102608306-102613782"	NA	inter
CUST_10386_PI429285431	5.071493	P	5.206796	P	0.9104785915224	0	lncRNA	11914-1_{1..739}	lnc-ZNF572-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF572-1:8	chr8	125963058	125963796	+	lnc-ZNF572-1	lnc-ZNF572-1:8	XLOC_006916	linc-ZNF572	NA	NA	NA	inter
CUST_46623_PI429285431	5.0143704	P	5.643106	P	0.646742982450249	0	lncRNA	50800-1_{1..782}	"gi|211938443|ref|NR_015396.1| Homo sapiens uncharacterized LOC440356 (LOC440356), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|211938443|ref|NR_015396.1| Homo sapiens uncharacterized LOC440356 (LOC440356), transcript variant 1, non-coding RNA"	Chr16	 29875155	 29875936	+	440356	NR_015396.1	NA	NA	NA	NA	NA	inter
CUST_41257_PI429285431	4.3692856	P	4.52092	P	0.900230032331879	0	lncRNA	42219-1_{1..67}	ENST00000584635 ncrna:miRNA chromosome:GRCh37:14:65801835:65801901:-1 gene:ENSG00000266740 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584635 ncrna:miRNA chromosome:GRCh37:14:65801835:65801901:-1 gene:ENSG00000266740 gene_biotype:miRNA transcript_biotype:miRNA	chr14	 65801835	 65801901	-	ENSG00000266740	ENST00000584635	NA	NA	NA	NA	NA	inter
CUST_15882_PI429285431	1.5101825	A	2.2619407	A	0.59387936065142	0	lncRNA	17573-1_{1..722}	lnc-C14orf23-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf23-4:1	chr14	 29636652	 29637373	+	lnc-C14orf23-4	lnc-C14orf23-4:1	XLOC_010784	linc-G2E3-2	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50"	NA	inter
LNCA_21_P0010280	0.9194022	A	0.906209	A	1.0091867710872	0	lncRNA	TCONS_00029138	NA	NA	NA	NA	XLOC_014080	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014080), lincRNA [TCONS_00029138]"	chr21:40389576-40389517	hs|21q22.2	Agilent_HUMAN_G3V2	TCONS_00029138	TCONS_00029138	chr21	 40389517	 40389576	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29108_PI429285431	0.9126252	A	0.89954394	A	1.00910847041977	0	lncRNA	30841-1_{1..453}	n326606|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000022602|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000022602|-1.3892400|-0.4589761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326606|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000022602|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000022602|-1.3892400|-0.4589761	chr1	 56183347	 56183799	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30386_PI429285431	4.444209	P	4.376875	P	1.04777867147673	0	lncRNA	32166-1_{1..478}	n335503|BC055410|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259503|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259503|-1.0844600|-0.2321133	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335503|BC055410|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259503|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259503|-1.0844600|-0.2321133	chr12	123011789	123012266	+	NA	NA	NA	NA	KNTC1	NA	chr12:123011809-123022372	inner
CUST_23545_PI429285431	5.510259	P	5.640278	P	0.913819415334477	0	lncRNA	25112-1_{1..581}	lnc-POLE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POLE-1:1	chr12	133424671	133425251	-	lnc-POLE-1	lnc-POLE-1:1	ENSG00000257072.1	RP11-46H11.10	CHFR	NA	chr12:133416938-133434778	inner
CUST_33276_PI429285431	0.9007933	A	1.6227022	A	0.606294693229881	0	lncRNA	34860-2_{3001..3916}	n339983|AK126494|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2436|NULL|-1.0113300|-0.3524037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339983|AK126494|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2436|NULL|-1.0113300|-0.3524037	chr4	 47555734	 47556649	+	NA	NA	NA	NA	ATP10D	NA	chr4:47542734-47566650	inner
CUST_48886_PI429285431	10.849458	P	11.097146	P	0.842245079452539	0	lncRNA	52723-1_{1..832}	hg19_lincRNAsTranscripts_TCONS_l2_00018665 range=chr3:75721315-75725140 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018665 range=chr3:75721315-75725140 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	 75721315	 75722146	+	NA	NA	NA	NA	FRG2C	NA	chr3:75711315-75716368	inter
CUST_13179_PI429285431	5.1865816	P	5.52287	P	0.792076456125464	0	lncRNA	14806-1_{1..1022}	lnc-CENPP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CENPP-1:1	chr9	 95435148	 95436169	+	lnc-CENPP-1	lnc-CENPP-1:1	XLOC_007462	linc-FGD3-2	IPPK	"hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-9.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20chr9:95425148-95432547"	NA	inter
CUST_41660_PI429285431	0.91976124	A	0.9103968	A	1.00651204695697	0	lncRNA	43079-1_{1..67}	ENST00000362225 ncrna:miRNA chromosome:GRCh37:19:54291144:54291210:1 gene:ENSG00000199095 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362225 ncrna:miRNA chromosome:GRCh37:19:54291144:54291210:1 gene:ENSG00000199095 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54291144	 54291210	+	ENSG00000199095	ENST00000362225	NA	NA	NLRP12	NA	chr19:54296838-54301210	inter
CUST_16913_PI429285431	6.3706403	P	6.834188	P	0.725200738827895	0	lncRNA	18623-1_{1..447}	lnc-POLN-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLN-1:3	chr4	  2025132	  2025578	-	lnc-POLN-1	lnc-POLN-1:3	XLOC_003854	linc-WHSC2-1	NA	NA	NA	inter
CUST_21112_PI429285431	1.170063	A	1.2728595	A	0.931226165093456	0	lncRNA	22737-1_{1..586}	lnc-OR3A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-OR3A1-1:2	chr17	  3289419	  3290004	-	lnc-OR3A1-1	lnc-OR3A1-1:2	ENSG00000262670.1	RP11-64J4.2	NA	NA	NA	inter
CUST_18772_PI429285431	0.9069315	A	0.9090198	A	0.998553547864589	0	lncRNA	20468-1_{1..2459}	lnc-SLC16A1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SLC16A1-2:1	chr1	113615561	113618019	-	lnc-SLC16A1-2	lnc-SLC16A1-2:1	ENSG00000238198	RP11-31F15.2	LRIG2	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90chr1:113615831-113625727"	NA	inter
CUST_35289_PI429285431	0.9059069	A	0.89951277	A	1.00444190934414	0	lncRNA	36692-1_{1..780}	n342309|BC058018|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4801|NULL|-0.7428060|-0.1667021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342309|BC058018|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4801|NULL|-0.7428060|-0.1667021	chr1	153065610	153066389	-	NA	NA	NA	NA	SPRR2F	NA	chr1:153084612-153085989	inner
CUST_18835_PI429285431	6.6645913	P	6.829099	P	0.892232929793744	0	lncRNA	20529-1_{1..1402}	lnc-GLB1L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLB1L2-1:1	chr11	134336080	134337481	+	lnc-GLB1L2-1	lnc-GLB1L2-1:1	ENSG00000255545	RP11-627G23.1	NA	NA	NA	inter
CUST_51224_PI429285431	7.9628906	P	8.048434	P	0.942429497166309	0	lncRNA	54842-1_{1..418}	hg19_lincRNAsTranscripts_TCONS_l2_00008916 range=chr15:22448413-22473375 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008916 range=chr15:22448413-22473375 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 22448413	 22448830	-	NA	NA	NA	NA	LOC642131	NA	chr15:22471454-22473353	inter
CUST_3710_PI429285431	1.1179003	A	0.90343887	A	1.16027069487254	0	lncRNA	3678-1_{1..307}	"transcript_id ""ENST00000428346.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428346.1"" | genecode_v17"	chr10	 67073543	 67073849	+	ENSG00000235356.1	ENST00000428346.1	RP11-428G2.1	RP11-428G2.1-001	NA	NA	NA	inter
CUST_36026_PI429285431	3.557487	P	4.123982	P	0.67525531711372	0	lncRNA	37356-1_{1..3000}	n344637|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_185|NULL|-1.3340200|-0.3109463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344637|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_185|NULL|-1.3340200|-0.3109463	chr11	 65189792	 65192791	-	NA	NA	NA	NA	FRMD8	NA	chr11:65179792-65180996	inter
LNCA_21_P0008168	0.9310231	A	0.9186908	A	1.0085847382973	0	lncRNA	TCONS_00022031	NA	NA	NA	NA	XLOC_010629	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010629), lincRNA [TCONS_00022031]"	chr13:57711300-57711241	hs|13q21.1	Agilent_HUMAN_G3V2	TCONS_00022031	TCONS_00022031	chr13	 57711241	 57711300	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40149_PI429285431	1.7343031	A	1.8351791	A	0.932466628732877	0	lncRNA	40987-1_{1..3000}	n407799|NR_027331|lncRNA|Homosapiens||RefGeneNoncode|NR_027331||1.5195200|-0.1526720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407799|NR_027331|lncRNA|Homosapiens||RefGeneNoncode|NR_027331||1.5195200|-0.1526720	chr3	 52096109	 52099108	-	NA	NA	NA	NA	DUSP7	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr3:52086109-52090461"	NA	inter
CUST_21234_PI429285431	3.732027	P	4.5032454	P	0.585922436225292	0	lncRNA	22860-1_{1..578}	lnc-SCD-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SCD-3:1	chr10	101950056	101950633	+	lnc-SCD-3	lnc-SCD-3:1	ENSG00000236308.1	RP11-316M21.7	CHUK	NA	chr10:101948124-101960504	inner
CUST_25762_PI429285431	4.8709893	P	4.5835805	P	1.22044628519174	0	lncRNA	27287-1_{1..367}	lnc-AGR3-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGR3-1:6	chr7	 17334790	 17335156	-	lnc-AGR3-1	lnc-AGR3-1:6	ENSG00000237773.1	AC003075.4	AHR	NA	chr7:17338276-17344846	inter
CUST_42247_PI429285431	4.488184	P	4.950585	P	0.725777380624957	0	lncRNA	44383-1_{1..65}	ENST00000387439 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:10405:10469:1 gene:ENSG00000210174 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000387439 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:10405:10469:1 gene:ENSG00000210174 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	chrMT	    10405	    10469	+	ENSG00000210174	ENST00000387439	NA	NA	NA	NA	NA	Unknown
CUST_30454_PI429285431	4.965439	P	4.4340262	P	1.44534389668344	0	lncRNA	32234-1_{1..808}	n335595|CR595525|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000274720|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000274720|1.2001300|-0.0637984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335595|CR595525|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000274720|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000274720|1.2001300|-0.0637984	chr11	 71950461	 71951268	-	NA	NA	NA	NA	INPPL1	NA	chr11:71940461-71950191	inner
CUST_35065_PI429285431	6.1836886	P	5.5797563	P	1.51985353398369	0	lncRNA	36475-1_{1..2232}	n342015|AK123971|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4496|NULL|-0.0273610|-0.2491323	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342015|AK123971|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4496|NULL|-0.0273610|-0.2491323	chr12	109171967	109174198	-	NA	NA	NA	NA	SSH1	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.51;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.01;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80chr12:109176466-109184194"	NA	inter
CUST_10284_PI429285431	6.680586	P	7.1527824	P	0.720866294561339	0	lncRNA	11810-1_{1..615}	lnc-AC007401.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC007401.2.1-1:1	chr2	 36582262	 36582876	-	lnc-AC007401.2.1-1	lnc-AC007401.2.1-1:1	XLOC_002048	linc-FAM98A-3	CRIM1	NA	chr2:36583370-36592644	inter
CUST_2908_PI429285431	2.3710642	A	2.0471644	A	1.25170952021868	0	lncRNA	2889-1_{1..685}	"transcript_id ""ENST00000467677.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000467677.1"" | genecode_v17"	chr7	114719073	114719757	+	ENSG00000225535.2	ENST00000467677.1	AC068610.3	AC068610.3-004	NA	NA	NA	inter
CUST_48557_PI429285431	1.2148297	A	1.3797468	A	0.891979772801158	0	lncRNA	52405-1_{1..655}	hg19_lincRNAsTranscripts_TCONS_l2_00014014 range=chr2:145425483-145558087 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014014 range=chr2:145425483-145558087 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	145425483	145426137	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32405_PI429285431	0.98832524	A	0.96612513	A	1.01550694768514	0	lncRNA	34081-1_{1..2096}	n338998|AK055302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1427|NULL|-1.1761500|-0.3739251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338998|AK055302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1427|NULL|-1.1761500|-0.3739251	chr2	166543820	166545915	+	NA	NA	NA	NA	CSRNP3	NA	chr2:166533820-166545917	inner
CUST_26350_PI429285431	2.7551272	A	3.002448	A	0.842459478023488	0	lncRNA	27857-1_{1..575}	lnc-TFEB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TFEB-1:1	chr6	 41516116	 41516690	-	lnc-TFEB-1	lnc-TFEB-1:1	ENSG00000234753.1	RP11-328M4.2	FOXP4	NA	chr6:41514164-41526359	inner
CUST_16781_PI429285431	1.9227024	A	1.7013491	A	1.16582666118712	0	lncRNA	18490-1_{1..525}	lnc-IAH1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IAH1-2:4	chr2	  9708494	  9709018	+	lnc-IAH1-2	lnc-IAH1-2:4	XLOC_001338	linc-TAF1B-3	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50"	NA	inter
CUST_39844_PI429285431	8.289519	P	8.751305	P	0.726086834963455	0	lncRNA	40746-1_{1..1246}	n406462|NR_023353|lncRNA|Homosapiens||RefGeneNoncode|NR_023353||3.7359500|-0.1612155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406462|NR_023353|lncRNA|Homosapiens||RefGeneNoncode|NR_023353||3.7359500|-0.1612155	chr3	 45017740	 45018985	+	NA	NA	NA	NA	ZDHHC3	NA	chr3:45007740-45017674	inner
CUST_29640_PI429285431	6.2043204	P	5.899087	P	1.23561852000407	0	lncRNA	31401-1_{1..628}	n333216|AF479407|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000080428|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000080428|1.0833900|-0.1560947	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333216|AF479407|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000080428|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000080428|1.0833900|-0.1560947	chr20	 45354925	 45355552	+	NA	NA	NA	NA	SLC2A10	NA	chr20:45344925-45364986	inner
CUST_15045_PI429285431	3.0189075	A	3.243744	P	0.855691995388505	0	lncRNA	16708-1_{1..983}	lnc-MC3R-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MC3R-3:1	chr20	 54615116	 54616098	+	lnc-MC3R-3	lnc-MC3R-3:1	XLOC_013574	linc-MC3R-3	NA	NA	NA	inter
CUST_15913_PI429285431	0.925831	A	1.0639464	A	0.908705426935196	0	lncRNA	17608-1_{1..707}	lnc-NLK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NLK-1:1	chr17	 26257835	 26258541	+	lnc-NLK-1	lnc-NLK-1:1	XLOC_012151	linc-NLK	NA	NA	NA	inter
CUST_4382_PI429285431	0.92847985	A	0.9129188	A	1.01084447759582	0	lncRNA	4333-1_{1..723}	"transcript_id ""ENST00000549914.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549914.1"" | genecode_v17"	chr12	 93397191	 93397913	+	ENSG00000257345.2	ENST00000549914.1	RP11-511B23.1	RP11-511B23.1-002	NA	NA	NA	inter
CUST_10255_PI429285431	0.914953	A	0.91771847	A	0.998084958303359	0	lncRNA	11782-1_{1..489}	lnc-RP11-1085N6.3.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-1085N6.3.1-2:1	chr14	 56981954	 56982442	-	lnc-RP11-1085N6.3.1-2	lnc-RP11-1085N6.3.1-2:1	XLOC_011038	linc-TBPL2-2	NA	NA	NA	inter
CUST_30466_PI429285431	6.7973623	P	7.035119	P	0.848062972211278	0	lncRNA	32246-1_{1..1006}	n335610|CR598307|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000277502|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000277502|5.3137500|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335610|CR598307|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000277502|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000277502|5.3137500|-1.0000000	chr12	 98908931	 98909936	-	NA	NA	NA	NA	TMPO	"hg19_refFlat_TMPO:range=chr12:98909646-989281205'pad=0,hg19_refFlat_TMPO:range=chr12:98909646-989281205'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.20;hg19_refFlat_TMPO:range=chr12:98909646-989416365'pad=0,hg19_refFlat_TMPO:range=chr12:98909646-989416365'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.20chr12:98909351-98919937"	NA	inner
CUST_14484_PI429285431	3.7633212	P	4.606402	P	0.557451887676249	0	lncRNA	16149-1_{1..308}	lnc-DNAJC19-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAJC19-2:3	chr3	181160162	181160469	-	lnc-DNAJC19-2	lnc-DNAJC19-2:3	XLOC_003343	linc-DNAJC19-6	NA	NA	NA	inter
CUST_38752_PI429285431	0.91195464	A	0.9182277	A	0.995661285682007	0	lncRNA	39743-1_{1..1482}	n384303|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003edb.1||-1.2924500|-0.4581095	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384303|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003edb.1||-1.2924500|-0.4581095	chr3	119389610	119391091	-	NA	NA	NA	NA	COX17	NA	chr3:119388372-119396243	inner
CUST_6763_PI429285431	1.3371662	A	0.91371703	A	1.34113007525734	0	lncRNA	6711-1_{1..1376}	"transcript_id ""ENST00000433588.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433588.1"" | genecode_v17"	chr21	 16866251	 16867626	-	ENSG00000224247.1	ENST00000433588.1	AJ009632.3	AJ009632.3-001	NA	NA	NA	inter
CUST_45676_PI429285431	11.118358	P	11.103826	P	1.01012371639096	0	lncRNA	50051-1_{1..1337}	"gi|336595079|ref|NR_038938.1| Homo sapiens uncharacterized LOC100505761 (LOC100505761), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336595079|ref|NR_038938.1| Homo sapiens uncharacterized LOC100505761 (LOC100505761), transcript variant 2, non-coding RNA"	Chr10	104209574	104210910	+	100505761	NR_038938.1	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20"	NA	inter
CUST_9094_PI429285431	3.3261824	P	4.541062	P	0.430809031489308	0	lncRNA	10616-1_{1..1912}	lnc-TCF12-1:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF12-1:16	chr15	 57599740	 57601651	+	lnc-TCF12-1	lnc-TCF12-1:16	ENSG00000247982	XLOC_011264	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30"	NA	inter
CUST_1829_PI429285431	2.48317	A	2.5452611	A	0.957874730634767	0	lncRNA	1818-1_{1..812}	"transcript_id ""ENST00000510505.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510505.1"" | genecode_v17"	chr4	104882773	104883584	+	ENSG00000249614.1	ENST00000510505.1	RP11-703G6.1	RP11-703G6.1-001	NA	NA	NA	inter
CUST_9520_PI429285431	0.90851146	A	0.9016046	A	1.00479894878253	0	lncRNA	11028-1_{1..918}	lnc-DIAPH3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DIAPH3-3:1	chr13	 61192968	 61193885	-	lnc-DIAPH3-3	lnc-DIAPH3-3:1	XLOC_010634	linc-DIAPH3-1	NA	NA	NA	inter
CUST_49671_PI429285431	0.9008492	A	0.93166625	A	0.97886577374562	0	lncRNA	53450-1_{1..2411}	hg19_lincRNAsTranscripts_TCONS_l2_00026949 range=chr7:149244256-149321776 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026949 range=chr7:149244256-149321776 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	149244256	149246666	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21998_PI429285431	5.15742	P	4.9211245	P	1.17796404136212	0	lncRNA	23607-1_{1..556}	lnc-C16orf61-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf61-1:1	chr16	 81069274	 81069829	-	lnc-C16orf61-1	lnc-C16orf61-1:1	ENSG00000260213.1	RP11-303E16.3	CENPN	NA	chr16:81059274-81066712	inter
CUST_50561_PI429285431	4.115437	P	4.7774057	P	0.632015260969023	0	lncRNA	54253-1_{1..364}	hg19_lincRNAsTranscripts_TCONS_l2_00030899 range=chrY:15863608-15866539 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030899 range=chrY:15863608-15866539 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrY	 15863608	 15863971	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49088_PI429285431	10.540682	P	10.3622	P	1.13169249469341	0	lncRNA	52912-1_{1..1159}	hg19_lincRNAsTranscripts_TCONS_l2_00020402 range=chr4:9482045-9500138 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020402 range=chr4:9482045-9500138 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	  9482045	  9483203	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003640	0.9279528	A	0.9250494	A	1.00201450992815	0	lncRNA	TCONS_00008203	NA	NA	NA	NA	XLOC_003657	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003657), lincRNA [TCONS_00008203]"	chr4:117276112-117276171	hs|4q26	Agilent_HUMAN_G3V2	TCONS_00008203	TCONS_00008203	chr4	117276112	117276171	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44077_PI429285431	7.084775	P	7.2956347	P	0.864022208221186	0	lncRNA	48745-1_{1..1309}	"gi|259490353|ref|NR_028501.1| Homo sapiens endothelin converting enzyme-like 1, pseudogene 2 (ECEL1P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|259490353|ref|NR_028501.1| Homo sapiens endothelin converting enzyme-like 1, pseudogene 2 (ECEL1P2), non-coding RNA"	Chr2	233250460	233251768	-	347694	NR_028501.1	NA	NA	NA	NA	NA	inter
CUST_42831_PI429285431	7.144497	P	7.6163216	P	0.721052094484014	0	lncRNA	45862-1_{1..183}	ENST00000516133 ncrna:snoRNA chromosome:GRCh37:2:53697585:53697767:-1 gene:ENSG00000251942 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516133 ncrna:snoRNA chromosome:GRCh37:2:53697585:53697767:-1 gene:ENSG00000251942 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 53697585	 53697767	-	ENSG00000251942	ENST00000516133	NA	NA	NA	NA	NA	inter
CUST_11183_PI429285431	3.7830539	P	3.9917607	P	0.865312530833826	0	lncRNA	12740-1_{1..279}	lnc-ASMT-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASMT-2:1	chrX	  1862680	  1862958	+	lnc-ASMT-2	lnc-ASMT-2:1	XLOC_007916	linc-CD99-6	NA	NA	NA	inter
CUST_15185_PI429285431	0.92844766	A	0.9189203	A	1.00662571630314	0	lncRNA	16850-1_{1..291}	lnc-PROP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PROP1-3:1	chr5	177479808	177480098	-	lnc-PROP1-3	lnc-PROP1-3:1	XLOC_005101	linc-PROP1-2	NA	NA	NA	inter
CUST_12783_PI429285431	1.3678892	A	1.3185023	A	1.03482506229218	0	lncRNA	14409-1_{1..434}	lnc-SMARCAL1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMARCAL1-2:3	chr2	217385437	217385870	+	lnc-SMARCAL1-2	lnc-SMARCAL1-2:3	XLOC_001856	linc-IGFBP2-3	NA	NA	NA	inter
CUST_6906_PI429285431	1.2922149	A	1.0658052	A	1.1699198535294	0	lncRNA	6856-1_{1..415}	"transcript_id ""ENST00000429512.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429512.1"" | genecode_v17"	chr21	 47472510	 47472924	+	ENSG00000228235.1	ENST00000429512.1	AP001476.4	AP001476.4-001	NA	NA	NA	inter
CUST_43982_PI429285431	0.9070914	A	1.1147153	A	0.865962286103686	0	lncRNA	48682-1_{1..1108}	"gi|310119045|ref|XR_109896.1| PREDICTED: Homo sapiens AML-associated zinc finger protein (AZFP), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119045|ref|XR_109896.1| PREDICTED: Homo sapiens AML-associated zinc finger protein (AZFP), misc_RNA"	NA	NA	NA	NA	NA	XR_109896.1	NA	NA	NA	"hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-24.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60"	NA	Unknown
CUST_22553_PI429285431	0.9267994	A	0.92918384	A	0.99834859720544	0	lncRNA	24140-1_{1..550}	lnc-INPPL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-INPPL1-3:1	chr11	 72074427	 72074976	+	lnc-INPPL1-3	lnc-INPPL1-3:1	ENSG00000255672.1	RP11-45F15.2	CLPB	NA	chr11:72064427-72084599	inner
CUST_4122_PI429285431	0.9264268	A	0.9157487	A	1.00742895367568	0	lncRNA	4082-1_{1..1130}	"transcript_id ""ENST00000526377.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526377.1"" | genecode_v17"	chr11	133905727	133906856	-	ENSG00000254648.1	ENST00000526377.1	RP11-713P17.4	RP11-713P17.4-001	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60"	NA	inter
CUST_39314_PI429285431	5.80454	P	5.4109564	P	1.31365241754595	0	lncRNA	40281-1_{1..1192}	n386345|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010hyn.1||3.0537000|-0.2952925	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386345|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010hyn.1||3.0537000|-0.2952925	chr3	185677757	185678948	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43045_PI429285431	6.7164154	P	7.0046043	P	0.818929463898823	0	lncRNA	46705-1_{1..118}	ENST00000459249 ncrna:snRNA chromosome:GRCh37:14:84216728:84216845:1 gene:ENSG00000238561 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459249 ncrna:snRNA chromosome:GRCh37:14:84216728:84216845:1 gene:ENSG00000238561 gene_biotype:snRNA transcript_biotype:snRNA	chr14	 84216728	 84216845	+	ENSG00000238561	ENST00000459249	NA	NA	NA	NA	NA	inter
CUST_23776_PI429285431	5.4768324	P	5.5919533	P	0.923304933154326	0	lncRNA	25339-1_{1..792}	lnc-VCAN-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VCAN-1:5	chr5	 83696476	 83697267	+	lnc-VCAN-1	lnc-VCAN-1:5	ENSG00000250320.1	CTD-2269F5.1	NA	NA	NA	inter
CUST_33696_PI429285431	0.90712756	A	0.9019504	A	1.00359498035378	0	lncRNA	35257-1_{1..2937}	n340472|AK094685|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2933|NULL|-1.3034900|-0.3470016	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340472|AK094685|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2933|NULL|-1.3034900|-0.3470016	chr5	 58152282	 58155218	+	NA	NA	NA	NA	RAB3C	NA	chr5:58142282-58147406	inter
CUST_21528_PI429285431	0.9020521	A	1.0560623	A	0.898748772343756	0	lncRNA	23146-1_{1..408}	lnc-ATMIN-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATMIN-3:2	chr16	 81110029	 81110436	+	lnc-ATMIN-3	lnc-ATMIN-3:2	ENSG00000261838.1	RP11-303E16.6	C16orf46	NA	chr16:81100029-81110872	inner
CUST_38214_PI429285431	4.226156	P	4.078269	P	1.10794556393041	0	lncRNA	39280-1_{1..1431}	n381580|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lnz.2||0.6383440|-0.1912934	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381580|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lnz.2||0.6383440|-0.1912934	chr11	   141452	   142882	-	NA	NA	NA	NA	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
CUST_3106_PI429285431	1.3663161	A	1.0117978	A	1.27855861334859	0	lncRNA	3086-1_{1..2387}	"transcript_id ""ENST00000426023.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426023.1"" | genecode_v17"	chr8	 54427731	 54430117	-	ENSG00000237807.3	ENST00000426023.1	RP11-400K9.4	RP11-400K9.4-001	NA	NA	NA	inter
CUST_22191_PI429285431	3.2350605	P	3.3571265	P	0.918870846276902	0	lncRNA	23791-1_{1..262}	lnc-FCHSD2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FCHSD2-2:1	chr11	 72926888	 72927149	-	lnc-FCHSD2-2	lnc-FCHSD2-2:1	ENSG00000215841.3	RP11-800A3.2	P2RY2	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.90chr11:72929344-72936958"	NA	inter
CUST_42814_PI429285431	4.8119535	P	4.9201713	P	0.927733408346249	0	lncRNA	45820-1_{1..116}	ENST00000516052 ncrna:snoRNA chromosome:GRCh37:1:204697119:204697234:1 gene:ENSG00000251861 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516052 ncrna:snoRNA chromosome:GRCh37:1:204697119:204697234:1 gene:ENSG00000251861 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	204697119	204697234	+	ENSG00000251861	ENST00000516052	NA	NA	NA	NA	NA	inter
CUST_18227_PI429285431	1.2185655	A	1.2577255	A	0.973221434461964	0	lncRNA	19962-1_{1..1723}	lnc-TARBP1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TARBP1-4:1	chr1	234350614	234352336	-	lnc-TARBP1-4	lnc-TARBP1-4:1	ENSG00000233332	RP4-799P18.2	SLC35F3	NA	chr1:234340614-234360834	inner
CUST_32333_PI429285431	0.91849494	A	0.92231977	A	0.997352341117252	0	lncRNA	34015-1_{1..1488}	n338912|BC053735|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1338|NULL|-1.1451800|-0.2481288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338912|BC053735|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1338|NULL|-1.1451800|-0.2481288	chr2	 96986185	 96987672	-	NA	NA	NA	NA	ITPRIPL1	NA	chr2:96991062-96994091	inter
CUST_11190_PI429285431	1.5902822	A	1.9710592	A	0.768023840520341	0	lncRNA	12748-1_{1..406}	lnc-PCDH20-9:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH20-9:3	chr13	 64291083	 64291488	-	lnc-PCDH20-9	lnc-PCDH20-9:3	XLOC_010643	linc-PCDH20-8	NA	NA	NA	inter
CUST_14643_PI429285431	0.9012246	A	0.8932253	A	1.00556009249755	0	lncRNA	16313-1_{1..324}	lnc-TMEM74-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM74-1:2	chr8	109930766	109931089	-	lnc-TMEM74-1	lnc-TMEM74-1:2	XLOC_007181	linc-TMEM74	NA	NA	NA	inter
LNCA_21_P0009584	1.5601859	A	1.3154821	A	1.1848494842893	0	lncRNA	TCONS_00026570	NA	NA	NA	NA	XLOC_012889	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012889), lincRNA [TCONS_00026570]"	chr18:73764527-73764468	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026570	TCONS_00026570	chr18	 73764468	 73764527	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48450_PI429285431	5.5897527	P	5.7086596	P	0.920885121848618	0	lncRNA	52305-1_{1..947}	hg19_lincRNAsTranscripts_TCONS_l2_00001738 range=chr1:208848851-208901923 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001738 range=chr1:208848851-208901923 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	208848851	208849797	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48355_PI429285431	0.9030033	A	0.90211934	A	1.00061290212953	0	lncRNA	52211-2_{3001..3565}	hg19_lincRNAsTranscripts_TCONS_l2_00001299 range=chr1:79575425-79654137 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001299 range=chr1:79575425-79654137 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 79578425	 79578989	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70"	NA	inter
CUST_11316_PI429285431	7.3509393	P	7.3773146	P	0.98188413652766	0	lncRNA	12879-1_{1..1633}	lnc-NR1D1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR1D1-1:2	chr17	 38278037	 38279669	-	lnc-NR1D1-1	lnc-NR1D1-1:2	XLOC_012467	linc-NR1D1-1	MSL1	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50chr17:38278790-38288113"	NA	inter
CUST_52154_PI429285431	2.3355298	A	0.89099234	A	2.72175547571217	0	lncRNA	55678-1_{1..848}	hg19_lincRNAsTranscripts_TCONS_l2_00017925 range=chr22:23701163-23712622 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017925 range=chr22:23701163-23712622 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 23701163	 23702010	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7867_PI429285431	1.270355	A	0.8985598	A	1.29396195507912	0	lncRNA	9489-1_{1..699}	lnc-NUBPL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NUBPL-1:1	chr14	 31908878	 31909576	+	lnc-NUBPL-1	lnc-NUBPL-1:1	ENSG00000250365	CTD-2213F21.2	C14orf126	NA	chr14:31915242-31919155	inter
CUST_1635_PI429285431	3.7313907	P	3.4547005	P	1.21141249741667	0	lncRNA	1620-1_{1..780}	"transcript_id ""ENST00000599448.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599448.1"" | genecode_v17"	chr3	195413288	195414067	+	ENSG00000242086.3	ENST00000599448.1	AC069513.3	AC069513.3-036	NA	NA	NA	inter
CUST_51020_PI429285431	0.9113784	A	0.9219109	A	0.992726011768238	0	lncRNA	54666-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00007044 range=chr13:19312242-19318510 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007044 range=chr13:19312242-19318510 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 19312242	 19315241	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28084_PI429285431	0.94436014	A	0.95847464	A	0.990264276141153	0	lncRNA	29705-1_{1..2186}	n325355|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325099|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325099|-0.8882070|-0.2690049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325355|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325099|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325099|-0.8882070|-0.2690049	chr2	 30423028	 30425213	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48605_PI429285431	0.9167826	A	0.9065021	A	1.00715134922683	0	lncRNA	52452-1_{1..1954}	hg19_lincRNAsTranscripts_TCONS_l2_00014568 range=chr2:51427647-51430276 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014568 range=chr2:51427647-51430276 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 51427647	 51429600	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4545_PI429285431	4.1708107	P	4.0506806	P	1.08683286700844	0	lncRNA	4493-1_{1..841}	"transcript_id ""ENST00000448748.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448748.1"" | genecode_v17"	chr13	 19114637	 19115477	+	ENSG00000231238.1	ENST00000448748.1	LINC00349	LINC00349-001	NA	NA	NA	inter
CUST_1674_PI429285431	2.8059652	A	3.956172	P	0.450560642035678	0	lncRNA	1658-1_{1..272}	"transcript_id ""ENST00000503095.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503095.1"" | genecode_v17"	chr4	  1021466	  1021737	+	ENSG00000250259.1	ENST00000503095.1	RP11-460I19.2	RP11-460I19.2-001	FGFRL1	NA	chr4:1011466-1020686	inter
CUST_585_PI429285431	6.744137	P	6.3641553	P	1.30132534855431	0	lncRNA	577-1_{1..543}	"transcript_id ""ENST00000450784.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000450784.1"" | genecode_v17"	chr1	222988364	222988906	+	ENSG00000228106.1	ENST00000450784.1	RP11-452F19.3	RP11-452F19.3-001	DISP1	NA	chr1:222988431-223020726	inner
LNCA_21_P0009630	1.8758467	A	0.90295947	A	1.9627646998377	0	lncRNA	TCONS_00026715	NA	NA	NA	NA	XLOC_012845	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012845), lincRNA [TCONS_00026715]"	chr18:51882149-51882090	hs|18q21.2	Agilent_HUMAN_G3V2	TCONS_00026715	TCONS_00026715	chr18	 51882090	 51882149	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34398_PI429285431	1.0569485	A	0.9188547	A	1.10045015523418	0	lncRNA	35881-1_{1..3000}	n341269|AL133090|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3737|NULL|-1.2026100|-0.3456197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341269|AL133090|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3737|NULL|-1.2026100|-0.3456197	chr7	 87829108	 87832107	+	NA	NA	NA	NA	ADAM22	NA	chr7:87819108-87832204	inner
CUST_18399_PI429285431	5.354698	P	5.4368954	P	0.944617782697619	0	lncRNA	20124-1_{1..717}	lnc-RASA1-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASA1-3:9	chr5	 87583253	 87583969	+	lnc-RASA1-3	lnc-RASA1-3:9	ENSG00000247828	CTC-358I24.1	NA	NA	NA	inter
CUST_7208_PI429285431	2.2135632	A	1.6215929	A	1.50730387917099	0	lncRNA	7626-1_{1..305}	"transcript_id ""ENST00000410662.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410662.1"" | genecode_v17"	chr4	145956284	145956588	+	ENSG00000222594.1	ENST00000410662.1	RN7SKP235	RN7SKP235-201	ANAPC10	NA	chr4:145946284-145966588	inner
CUST_33079_PI429285431	6.472068	P	5.6196632	P	1.8055079840838	0	lncRNA	34684-2_{3001..6000}	n339766|D87436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2213|NULL|15.9451000|-0.2685408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339766|D87436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2213|NULL|15.9451000|-0.2685408	chr18	  2919999	  2922998	-	NA	NA	NA	NA	EMILIN2	NA	chr18:2906999-2914090	inner
CUST_25564_PI429285431	8.187776	P	8.393085	P	0.867352895462977	0	lncRNA	27093-1_{1..445}	lnc-RPP30-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RPP30-4:1	chr10	 92821736	 92822180	+	lnc-RPP30-4	lnc-RPP30-4:1	ENSG00000224851.1	LINC00502	NA	NA	NA	inter
CUST_17620_PI429285431	0.9166099	A	0.8968389	A	1.01379854606052	0	lncRNA	19344-1_{1..3000}	lnc-CBWD5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBWD5-1:1	chr9	 70503370	 70506369	-	lnc-CBWD5-1	lnc-CBWD5-1:1	XLOC_007718	linc-CBWD3-2	NA	NA	NA	inter
CUST_29364_PI429285431	3.5253963	P	3.3270345	P	1.14739473254557	0	lncRNA	31116-1_{1..502}	n332622|AB000268|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000057898|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000057898|2.7354600|-0.2608725	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332622|AB000268|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000057898|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000057898|2.7354600|-0.2608725	chr11	  3752571	  3753072	-	NA	NA	NA	NA	NUP98	NA	chr11:3742571-3775871	inner
CUST_38323_PI429285431	1.8368156	A	1.4447985	A	1.31222680808372	0	lncRNA	39369-1_{1..1176}	n382036|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vdz.2||1.0482600|-0.4241192	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n382036|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vdz.2||1.0482600|-0.4241192	chr13	 50618045	 50619220	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37348_PI429285431	0.9018957	A	0.9031614	A	0.999123068343068	0	lncRNA	38452-1_{1..204}	n345791|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1340|NULL|-1.3152400|-0.2529671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345791|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1340|NULL|-1.3152400|-0.2529671	chr21	 26884777	 26884980	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010962	3.5207987	P	4.1279693	P	0.656482928418973	0	lncRNA	TCONS_l2_00004348	NA	NA	NA	NA	XLOC_l2_002204	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002204), lincRNA [TCONS_l2_00004348]"	chr11:3433279-3433338	hs|11p15.4	Agilent_HUMAN_G3V2	TCONS_l2_00004348	TCONS_l2_00004348	chr11	  3433279	  3433338	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15794_PI429285431	1.9828522	A	2.5378828	A	0.680642621459903	0	lncRNA	17484-1_{1..939}	lnc-GLB1L2-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLB1L2-1:9	chr11	134367586	134368524	+	lnc-GLB1L2-1	lnc-GLB1L2-1:9	XLOC_009344	TCONS_00019548	NA	NA	NA	inter
CUST_45298_PI429285431	8.048434	P	6.160188	P	3.70184887616206	0	lncRNA	49742-2_{3001..3736}	"gi|378744176|ref|NR_046386.1| Homo sapiens ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase (UHRF2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378744176|ref|NR_046386.1| Homo sapiens ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase (UHRF2), transcript variant 2, non-coding RNA"	Chr9	  6416151	  6416886	+	115426	NR_046386.1	NA	NA	NA	NA	NA	inter
CUST_19963_PI429285431	1.6349901	A	1.4435929	A	1.14186904102317	0	lncRNA	21617-1_{1..638}	lnc-SSH2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SSH2-1:1	chr17	 27948635	 27949272	-	lnc-SSH2-1	lnc-SSH2-1:1	ENSG00000264007.1	RP11-68I3.10	SSH2	NA	chr17:27952965-27959272	inter
CUST_23314_PI429285431	3.0785167	P	3.382289	P	0.810131326256028	0	lncRNA	24885-1_{1..265}	lnc-VCAN-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VCAN-1:3	chr5	 83713097	 83713361	+	lnc-VCAN-1	lnc-VCAN-1:3	ENSG00000250320.1	CTD-2269F5.1	NA	NA	NA	inter
LNCA_21_P0010108	1.6038487	A	0.90400136	A	1.62433290345377	0	lncRNA	TCONS_00028615	NA	NA	NA	NA	XLOC_013649	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013649), lincRNA [TCONS_00028615]"	chr20:10299034-10298975	hs|20p12.2	Agilent_HUMAN_G3V2	TCONS_00028615	TCONS_00028615	chr20	 10298975	 10299034	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30401_PI429285431	2.7319822	A	3.266584	A	0.690349194519215	0	lncRNA	32181-1_{1..552}	n335523|BC068061|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000262921|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000262921|-1.1010500|-0.2427805	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335523|BC068061|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000262921|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000262921|-1.1010500|-0.2427805	chr10	 72575717	 72576268	+	NA	NA	NA	NA	SGPL1	NA	chr10:72575704-72590258	inner
CUST_29869_PI429285431	6.539053	P	6.647692	P	0.927462592779557	0	lncRNA	31632-1_{1..264}	n333865|L29149|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192792|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192792|1.2140300|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333865|L29149|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192792|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192792|1.2140300|-1.0000000	chr19	 17213227	 17213490	+	NA	NA	NA	NA	MYO9B	NA	chr19:17203227-17273484	inner
CUST_15518_PI429285431	0.8998701	A	0.890945	A	1.00620558324435	0	lncRNA	17204-1_{1..1026}	lnc-COPS8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COPS8-1:1	chr2	238060625	238061650	+	lnc-COPS8-1	lnc-COPS8-1:1	XLOC_001907	linc-MLPH-5	NA	NA	NA	inter
CUST_34764_PI429285431	1.5163451	A	1.299641	A	1.16207573872444	0	lncRNA	36204-1_{1..786}	n341673|BC040892|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4144|NULL|-0.9626090|-0.4225260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341673|BC040892|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4144|NULL|-0.9626090|-0.4225260	chr9	 31371608	 31372393	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39496_PI429285431	1.2983712	A	0.94406223	A	1.27837311242773	0	lncRNA	40443-1_{1..710}	n387225|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ahb.1||-0.9025250|-0.2132217	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387225|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ahb.1||-0.9025250|-0.2132217	chr22	 19553652	 19554361	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004445	0.9208642	A	0.9079043	A	1.00902358744053	0	lncRNA	THC2733343	NA	NA	NA	NA	XLOC_005008	NA	NA	THC2733343	NA	"BROAD Institute lincRNA (XLOC_005008), lincRNA [TCONS_00010492]"	NA	NA	Agilent_HUMAN_G3V2	THC2733343	THC2733343	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6366_PI429285431	3.3479972	P	3.282099	P	1.04673641915255	0	lncRNA	6292-1_{1..456}	"transcript_id ""ENST00000598546.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598546.1"" | genecode_v17"	chr19	 17516553	 17517008	+	ENSG00000269640.1	ENST00000598546.1	CTD-2521M24.9	CTD-2521M24.9-004	FAM125A	NA	chr19:17527840-17535258	inter
CUST_19915_PI429285431	1.9163913	A	2.4196298	A	0.705521278387874	0	lncRNA	21570-1_{1..565}	lnc-RNF125-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF125-1:1	chr18	 29691717	 29692281	+	lnc-RNF125-1	lnc-RNF125-1:1	ENSG00000263917.1	RP11-53I6.2	RNF138	NA	chr18:29681717-29701742	inner
CUST_29916_PI429285431	14.244976	P	14.123972	P	1.08749140601711	0	lncRNA	31680-1_{1..336}	n334052|M28016|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195205|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195205|-0.3637180|-0.5183138	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334052|M28016|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195205|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195205|-0.3637180|-0.5183138	chrM	    15552	    15887	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39878_PI429285431	0.9293976	A	0.92625666	A	1.00217950538173	0	lncRNA	40769-3_{6001..6813}	n406542|NR_024052_5|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_5||1.5958200|-0.1895631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406542|NR_024052_5|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_5||1.5958200|-0.1895631	chr6	  1609264	  1610076	-	NA	NA	NA	NA	GMDS	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_FOXC1:range=chr6:1610681-16123425'pad=0,hg19_refFlat_FOXC1:range=chr6:1610681-16123425'pad=0 3'pad=0 strand=+ repeatMasking=none,-112.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FOXC2:range=chr16:86600942-866024475'pad=0,hg19_refFlat_FOXC2:range=chr16:86600942-866024475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50chr6:1624041-1652995"	NA	inner
CUST_21753_PI429285431	6.2511005	P	6.4357634	P	0.879854638665316	0	lncRNA	23363-1_{1..499}	lnc-HNRNPA3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HNRNPA3-2:1	chr2	178130108	178130606	+	lnc-HNRNPA3-2	lnc-HNRNPA3-2:1	ENSG00000222043.2	AC079305.10	NFE2L2	"hg19_refFlat_NFE2L2:range=chr2:178095513-1781293045'pad=0,hg19_refFlat_NFE2L2:range=chr2:178095513-1781293045'pad=0 3'pad=0 strand=- repeatMasking=none,-99.80chr2:178120108-178129859"	NA	inter
CUST_35733_PI429285431	1.3191577	A	1.1550314	A	1.12048730238878	0	lncRNA	37150-1_{1..518}	n342901|AJ293393|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5409|NULL|-1.1026800|-0.3046168	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342901|AJ293393|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5409|NULL|-1.1026800|-0.3046168	chr12	 98943553	 98944070	-	NA	NA	NA	NA	TMPO	NA	chr12:98933553-98944157	inner
CUST_50163_PI429285431	6.9729047	P	6.620082	P	1.27705680566129	0	lncRNA	53889-1_{1..677}	hg19_lincRNAsTranscripts_TCONS_l2_00028627 range=chr9:14992378-15017485 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028627 range=chr9:14992378-15017485 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 14992378	 14993054	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45776_PI429285431	6.6133285	P	6.823991	P	0.864140318299907	0	lncRNA	50121-1_{1..3000}	"gi|350606397|ref|NR_015384.2| Homo sapiens uncharacterized LOC100126784 (LOC100126784), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|350606397|ref|NR_015384.2| Homo sapiens uncharacterized LOC100126784 (LOC100126784), non-coding RNA"	Chr11	 19732480	 19735479	-	100126784	NR_015384.2	NA	NA	NA	"hg19_refFlat_NAV2:range=chr11:19735242-201398045'pad=0,hg19_refFlat_NAV2:range=chr11:19735242-201398045'pad=0 3'pad=0 strand=+ repeatMasking=none,-110.10"	NA	inter
CUST_25106_PI429285431	6.511103	P	6.7457376	P	0.849900231194713	0	lncRNA	26643-1_{1..1730}	lnc-RPL7L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPL7L1-1:1	chr6	 42757880	 42759609	+	lnc-RPL7L1-1	lnc-RPL7L1-1:1	ENSG00000236163.1	RP11-501I18.2	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50"	NA	inter
CUST_45552_PI429285431	5.8349915	P	4.739848	P	2.13634330037611	0	lncRNA	49952-1_{1..3000}	"gi|350276251|ref|NR_045259.1| Homo sapiens neuropilin 1 (NRP1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|350276251|ref|NR_045259.1| Homo sapiens neuropilin 1 (NRP1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NR_045259.1	NA	NA	NA	NA	NA	Unknown
CUST_7309_PI429285431	6.553721	P	6.8674097	P	0.804581962267383	0	lncRNA	8474-1_{1..98}	"transcript_id ""ENST00000517287.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517287.1"" | genecode_v17"	chr14	104192065	104192162	-	ENSG00000253096.1	ENST00000517287.1	Y_RNA	Y_RNA.810-201	PPP1R13B	NA	chr14:104200088-104202162	inner
CUST_50150_PI429285431	0.8989701	A	1.2821987	A	0.766719830811924	0	lncRNA	53875-1_{1..817}	hg19_lincRNAsTranscripts_TCONS_l2_00029179 range=chr9:2535669-2570842 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029179 range=chr9:2535669-2570842 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	  2535669	  2536485	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9387_PI429285431	0.91737956	A	1.0273918	A	0.92658020063803	0	lncRNA	10891-1_{1..240}	lnc-PCDH7-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH7-3:2	chr4	 31560274	 31560513	+	lnc-PCDH7-3	lnc-PCDH7-3:2	XLOC_003495	linc-DTHD1-11	NA	NA	NA	inter
CUST_38625_PI429285431	0.9368733	A	1.2453234	A	0.807508807229995	0	lncRNA	39629-1_{1..1285}	n383801|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vea.2||3.5309900|-0.3208707	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383801|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vea.2||3.5309900|-0.3208707	chr2	211097415	211098699	+	NA	NA	NA	NA	ACADL	NA	chr2:211087415-211090215	inter
CUST_29404_PI429285431	4.8825693	P	3.4711463	P	2.65999401562878	0	lncRNA	31158-1_{1..203}	n332765|AF027140|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062866|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062866|1.1155300|-0.0470722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332765|AF027140|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062866|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062866|1.1155300|-0.0470722	chr17	 16456079	 16456281	-	NA	NA	NA	NA	ZNF287	NA	chr17:16453631-16466282	inner
CUST_24635_PI429285431	2.9606683	P	3.7995534	P	0.55907544993849	0	lncRNA	26184-1_{1..534}	lnc-CPLX1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPLX1-2:4	chr4	   775560	   776093	-	lnc-CPLX1-2	lnc-CPLX1-2:4	ENSG00000249592.1	RP11-440L14.1	CPLX1	NA	chr4:778745-785618	inter
CUST_1663_PI429285431	0.9192128	A	1.7137873	A	0.576513181738566	0	lncRNA	1648-1_{1..519}	"transcript_id ""ENST00000444346.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444346.1"" | genecode_v17"	chr3	195563064	195563582	-	ENSG00000223783.1	ENST00000444346.1	AC124944.5	AC124944.5-002	TNK2	NA	chr3:195590236-195591099	inter
CUST_9333_PI429285431	3.1204019	A	3.648212	P	0.693606777080618	0	lncRNA	10841-1_{1..495}	lnc-DYNC1I1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DYNC1I1-2:1	chr7	 96005579	 96006073	+	lnc-DYNC1I1-2	lnc-DYNC1I1-2:1	XLOC_006181	linc-DLX6-2	NA	NA	NA	inter
CUST_6291_PI429285431	3.7444072	P	3.1282644	P	1.53277166861179	0	lncRNA	6215-1_{1..1882}	"transcript_id ""ENST00000591866.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591866.1"" | genecode_v17"	chr19	   663482	   665363	+	ENSG00000267666.1	ENST00000591866.1	AC004156.3	AC004156.3-001	RNF126	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50chr19:653482-663233"	NA	inter
CUST_5524_PI429285431	5.784074	P	5.646557	P	1.1000102751752	0	lncRNA	5455-1_{1..547}	"transcript_id ""ENST00000568150.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568150.1"" | genecode_v17"	chr16	 48657347	 48657893	+	ENSG00000260086.1	ENST00000568150.1	RP11-42I10.1	RP11-42I10.1-001	NA	NA	NA	inter
CUST_6831_PI429285431	1.1043007	A	1.0552408	A	1.03459053632562	0	lncRNA	6779-1_{1..516}	"transcript_id ""ENST00000435878.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435878.1"" | genecode_v17"	chr21	 27722099	 27722614	-	ENSG00000229025.1	ENST00000435878.1	AP001595.1	AP001595.1-001	NA	NA	NA	inter
CUST_24475_PI429285431	2.1621392	A	2.8142242	A	0.63635997378812	0	lncRNA	26027-1_{1..544}	lnc-CTD-2021H9.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2021H9.3.1-1:1	chr12	 71498130	 71498673	-	lnc-CTD-2021H9.3.1-1	lnc-CTD-2021H9.3.1-1:1	ENSG00000257454.1	CTD-2021H9.2	NA	NA	NA	inter
CUST_39849_PI429285431	5.9374714	P	6.112074	P	0.886011543298393	0	lncRNA	40749-2_{3001..6000}	n406467|NR_023361|lncRNA|Homosapiens||RefGeneNoncode|NR_023361||1.6067100|-0.2367649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406467|NR_023361|lncRNA|Homosapiens||RefGeneNoncode|NR_023361||1.6067100|-0.2367649	chr15	 90376830	 90379829	-	NA	NA	NA	NA	C15orf38-AP3S2	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr15:90373831-90447617"	NA	inner
CUST_8591_PI429285431	0.9086658	A	0.90160495	A	1.0049062044698	0	lncRNA	10147-1_{1..975}	lnc-PTAR1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTAR1-2:3	chr9	 72435469	 72436443	-	lnc-PTAR1-2	lnc-PTAR1-2:3	ENSG00000225626	RP11-109D9.3	C9orf135	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10chr9:72435731-72445583"	NA	inter
CUST_16492_PI429285431	1.1819371	A	0.9003567	A	1.21552570273263	0	lncRNA	18190-1_{1..597}	lnc-ABI1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABI1-3:1	chr10	 26868123	 26868719	-	lnc-ABI1-3	lnc-ABI1-3:1	XLOC_008752	linc-ENKUR-2	NA	NA	NA	inter
CUST_46822_PI429285431	9.162292	P	8.910222	P	1.19091463150149	0	lncRNA	50962-1_{1..2007}	"gi|262205532|ref|NR_029431.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 7 (DNAJC7), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|262205532|ref|NR_029431.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 7 (DNAJC7), transcript variant 3, non-coding RNA"	NW_003571052.1	   263063	   265069	-	7266	NR_029431.1	NA	NA	NA	NA	NA	Unknown
CUST_20567_PI429285431	0.92406076	A	0.9136586	A	1.007236284155	0	lncRNA	22208-1_{1..859}	lnc-PNPLA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PNPLA3-1:1	chr22	 44212794	 44213652	+	lnc-PNPLA3-1	lnc-PNPLA3-1:1	ENSG00000261251.1	RP3-388M5.9	EFCAB6	NA	chr22:44202794-44208217	inter
CUST_42762_PI429285431	6.981346	P	6.901189	P	1.05713307586529	0	lncRNA	45730-1_{1..153}	ENST00000516084 ncrna:snoRNA chromosome:GRCh37:12:76082932:76083084:-1 gene:ENSG00000251893 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516084 ncrna:snoRNA chromosome:GRCh37:12:76082932:76083084:-1 gene:ENSG00000251893 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 76082932	 76083084	-	ENSG00000251893	ENST00000516084	NA	NA	NA	NA	NA	inter
CUST_35242_PI429285431	0.9111351	A	0.90977013	A	1.0009465728246	0	lncRNA	36643-1_{1..2233}	n342241|BC040959|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4731|NULL|-0.5402180|-0.2897661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342241|BC040959|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4731|NULL|-0.5402180|-0.2897661	chrX	102024106	102026338	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24167_PI429285431	4.3195815	P	4.6507554	P	0.794889430557643	0	lncRNA	25718-1_{1..347}	lnc-GSX2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-GSX2-3:2	chr4	 54460012	 54460358	+	lnc-GSX2-3	lnc-GSX2-3:2	ENSG00000248494.1	LNX1-AS2	LNX1	NA	chr4:54450012-54457724	inter
CUST_22485_PI429285431	0.92262876	A	1.4928211	A	0.673526987876869	0	lncRNA	24072-1_{1..1609}	lnc-ZCWPW2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZCWPW2-2:1	chr3	 28798841	 28800449	+	lnc-ZCWPW2-2	lnc-ZCWPW2-2:1	ENSG00000228214.1	AC109586.1	NA	NA	NA	inter
CUST_18750_PI429285431	9.736612	P	9.4273405	P	1.23908185798923	0	lncRNA	20446-1_{1..514}	lnc-AL353597.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL353597.1-1:1	chr6	 37515377	 37515890	+	lnc-AL353597.1-1	lnc-AL353597.1-1:1	ENSG00000231872	RP1-153P14.4	NA	NA	NA	inter
LNCA_21_P0004463	2.9755409	A	2.955404	A	1.01405570084512	0	lncRNA	TCONS_00010544	NA	NA	NA	NA	XLOC_005072	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005072), lincRNA [TCONS_00010544]"	chr5:166332006-166331947	hs|5q34	Agilent_HUMAN_G3V2	TCONS_00010544	TCONS_00010544	chr5	166331947	166332006	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43333_PI429285431	5.2127204	P	5.3028555	P	0.939434772492043	0	lncRNA	48161-1_{1..3000}	ENST00000448262 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:30014128:30018360:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>ENST00000448262 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:30014128:30018360:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	chrHSCHR6_MHC_QBL	 30014128	 30017127	-	ENSG00000235814	ENST00000448262	NA	NA	NA	NA	NA	Unknown
CUST_42682_PI429285431	10.455394	P	10.335239	P	1.08685162521524	0	lncRNA	45602-1_{1..136}	ENST00000386157 ncrna:snoRNA chromosome:GRCh37:12:132515769:132515904:1 gene:ENSG00000208892 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000386157 ncrna:snoRNA chromosome:GRCh37:12:132515769:132515904:1 gene:ENSG00000208892 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	132515769	132515904	+	ENSG00000208892	ENST00000386157	NA	NA	EP400	NA	chr12:132505769-132525904	inner
CUST_50090_PI429285431	3.3843286	P	3.811316	P	0.743813377397917	0	lncRNA	53823-3_{6001..6161}	hg19_lincRNAsTranscripts_TCONS_l2_00028401 range=chr8:126957007-126967898 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028401 range=chr8:126957007-126967898 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	126963007	126963167	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.10"	NA	inter
CUST_27192_PI429285431	7.427676	P	7.783934	P	0.7811881662593	0	lncRNA	28733-1_{1..595}	n324323|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042929|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042929|0.1331520|-0.1936068	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324323|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042929|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042929|0.1331520|-0.1936068	chr6	160240207	160240801	+	NA	NA	NA	NA	PNLDC1	NA	chr6:160230207-160241735	inner
CUST_36415_PI429285431	0.89848644	A	0.9049621	A	0.995521473173179	0	lncRNA	37633-1_{1..780}	n344932|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_481|NULL|-1.2967100|-0.2858223	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344932|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_481|NULL|-1.2967100|-0.2858223	chr6	158201889	158202668	-	NA	NA	NA	NA	SNX9	NA	chr6:158244294-158247922	inter
CUST_47884_PI429285431	4.4892697	P	4.8819942	P	0.761689809810641	0	lncRNA	51779-1_{1..3000}	"gi|410171576|ref|XR_171261.1| PREDICTED: Homo sapiens uncharacterized LOC440742 (LOC440742), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171576|ref|XR_171261.1| PREDICTED: Homo sapiens uncharacterized LOC440742 (LOC440742), misc_RNA"	NA	NA	NA	NA	NA	XR_171261.1	NA	NA	NA	NA	NA	Unknown
CUST_34785_PI429285431	2.1986861	A	2.1852348	A	1.00936733205049	0	lncRNA	36222-1_{1..1387}	n341692|AK001225|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4163|NULL|-1.1253600|-0.2801905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341692|AK001225|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4163|NULL|-1.1253600|-0.2801905	chr9	 37930140	 37931526	-	NA	NA	NA	NA	SHB	NA	chr9:37920140-37984245	inner
CUST_22675_PI429285431	0.91753143	A	1.7127341	A	0.576262214316978	0	lncRNA	24258-1_{1..413}	lnc-TBL1XR1-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-TBL1XR1-10:1	chr3	174832971	174833383	-	lnc-TBL1XR1-10	lnc-TBL1XR1-10:1	ENSG00000230292.1	NAALADL2-AS3	NAALADL2	NA	chr3:174822971-174843032	inner
CUST_17817_PI429285431	3.752523	P	3.9919465	P	0.847083738851617	0	lncRNA	19553-1_{1..214}	lnc-FAM156B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM156B-1:1	chrX	 52944007	 52944220	+	lnc-FAM156B-1	lnc-FAM156B-1:1	XLOC_007985	linc-GPR173-2	FAM156B	NA	chrX:52934007-52937587	inter
CUST_28710_PI429285431	0.8997182	A	1.0949726	A	0.873418866585951	0	lncRNA	30410-1_{1..633}	n326100|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046504|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046504|-1.2887700|-0.3543939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326100|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046504|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046504|-1.2887700|-0.3543939	chr10	  4057131	  4057763	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50819_PI429285431	1.2430965	A	0.9084601	A	1.2610595460654	0	lncRNA	54470-1_{1..290}	hg19_lincRNAsTranscripts_TCONS_l2_00004527 range=chr11:58853837-58861440 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004527 range=chr11:58853837-58861440 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 58853837	 58854126	+	NA	NA	NA	NA	FAM111B	NA	chr11:58852434-58871440	inter
LNCA_21_P0009326	0.9297238	A	2.637338	A	0.306165960886244	0	lncRNA	TCONS_00025656	NA	NA	NA	NA	XLOC_012482	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012482), lincRNA [TCONS_00025656]"	chr17:41754224-41754165	hs|17q21.31	Agilent_HUMAN_G3V2	TCONS_00025656	TCONS_00025656	chr17	 41754165	 41754224	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44242_PI429285431	10.886149	P	11.008077	P	0.918958744438376	0	lncRNA	48890-2_{3001..6000}	"gi|242247281|ref|NR_027898.1| Homo sapiens collagen, type VI, alpha 4 pseudogene 2 (COL6A4P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|242247281|ref|NR_027898.1| Homo sapiens collagen, type VI, alpha 4 pseudogene 2 (COL6A4P2), non-coding RNA"	Chr3	129934663	129937662	+	646300	NR_027898.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70"	NA	inter
CUST_35892_PI429285431	1.5236901	A	0.9051496	A	1.53532119028686	0	lncRNA	37276-1_{1..2243}	n344551|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_99|NULL|-1.3083800|-0.2717891	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n344551|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_99|NULL|-1.3083800|-0.2717891	chr7	 66321912	 66324154	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_25039_PI429285431	1.6828043	A	1.6960074	A	0.990890057733474	0	lncRNA	26578-1_{1..1756}	lnc-PAPPA-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-PAPPA-2:1	chr9	119324278	119326033	+	lnc-PAPPA-2	lnc-PAPPA-2:1	ENSG00000229105.1	RP11-264C15.2	ASTN2	NA	chr9:119314278-119334572	inner
CUST_41618_PI429285431	2.4629202	A	1.8028755	A	1.58013158125795	0	lncRNA	42990-1_{1..85}	ENST00000577602 ncrna:miRNA chromosome:GRCh37:1:170120519:170120603:1 gene:ENSG00000263390 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577602 ncrna:miRNA chromosome:GRCh37:1:170120519:170120603:1 gene:ENSG00000263390 gene_biotype:miRNA transcript_biotype:miRNA	chr1	170120519	170120603	+	ENSG00000263390	ENST00000577602	NA	NA	METTL11B	NA	chr1:170115188-170130603	inner
CUST_31169_PI429285431	0.927151	A	0.92996794	A	0.998049350974722	0	lncRNA	32964-1_{1..216}	n337588|S50113|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000398629|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000398629|1.1508300|-0.1516751	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337588|S50113|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000398629|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000398629|1.1508300|-0.1516751	chr13	 47466517	 47466732	-	NA	NA	NA	NA	HTR2A	NA	chr13:47456517-47471169	inner
CUST_13075_PI429285431	8.403251	P	8.25249	P	1.1101549077164	0	lncRNA	14702-1_{1..422}	lnc-DPP6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DPP6-1:1	chr7	153445840	153446261	+	lnc-DPP6-1	lnc-DPP6-1:1	XLOC_006299	linc-DPP6-1	NA	NA	NA	inter
CUST_3414_PI429285431	2.9206371	A	2.9372866	A	0.988525782777499	0	lncRNA	3386-1_{1..719}	"transcript_id ""ENST00000441101.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441101.1"" | genecode_v17"	chr9	 45034957	 45035675	-	ENSG00000229697.1	ENST00000441101.1	RP11-374M1.3	RP11-374M1.3-001	NA	NA	NA	inter
CUST_17405_PI429285431	0.92667115	A	0.9126753	A	1.00974839298986	0	lncRNA	19129-1_{1..459}	lnc-CLEC2D-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLEC2D-6:1	chr12	  9500555	  9501013	+	lnc-CLEC2D-6	lnc-CLEC2D-6:1	XLOC_009650	linc-CLEC2D-5	NA	NA	NA	inter
CUST_18962_PI429285431	0.9219253	A	0.9271182	A	0.996407026239194	0	lncRNA	20654-1_{1..834}	lnc-AC005493.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC005493.1-1:3	chr7	 34911111	 34911944	-	lnc-AC005493.1-1	lnc-AC005493.1-1:3	ENSG00000197085	AC005688.1	NPSR1	NA	chr7:34901111-34917944	inner
CUST_35964_PI429285431	3.8832948	P	3.2522101	P	1.54872897824387	0	lncRNA	37314-2_{3001..3999}	n344589|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_137|NULL|-1.3735600|-0.2460965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344589|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_137|NULL|-1.3735600|-0.2460965	chr1	  9211455	  9212453	-	NA	NA	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20"	NA	inter
CUST_41566_PI429285431	1.3019487	A	1.7874507	A	0.714248496801774	0	lncRNA	42883-1_{1..85}	ENST00000577285 ncrna:miRNA chromosome:GRCh37:18:42550047:42550131:-1 gene:ENSG00000265957 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577285 ncrna:miRNA chromosome:GRCh37:18:42550047:42550131:-1 gene:ENSG00000265957 gene_biotype:miRNA transcript_biotype:miRNA	chr18	 42550047	 42550131	-	ENSG00000265957	ENST00000577285	NA	NA	SETBP1	NA	chr18:42540047-42560131	inner
CUST_36888_PI429285431	1.7272985	A	1.8078991	A	0.945663880925861	0	lncRNA	38047-1_{1..487}	n345360|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_909|NULL|-1.3182100|-0.3984878	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345360|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_909|NULL|-1.3182100|-0.3984878	chr18	 45483430	 45483916	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-18.40;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20"	NA	inter
CUST_39743_PI429285431	9.255197	P	9.38034	P	0.916913154225509	0	lncRNA	40667-2_{3001..3839}	n405862|NR_003083|lncRNA|Homosapiens||RefGeneNoncode|NR_003083||7.1593700|-0.0750099	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405862|NR_003083|lncRNA|Homosapiens||RefGeneNoncode|NR_003083||7.1593700|-0.0750099	chr16	 32891796	 32892634	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29006_PI429285431	0.9087153	A	0.91078454	A	0.998566740227359	0	lncRNA	30730-1_{1..377}	n326490|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030261|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030261|-0.6214980|-0.1708259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326490|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030261|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030261|-0.6214980|-0.1708259	chr1	106271769	106272145	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007992	0.92832303	A	0.9167431	A	1.00805889531135	0	lncRNA	ENST00000435067	NA	NA	NA	NA	XLOC_010594	NA	ENST00000435067	NA	NA	"BROAD Institute lincRNA (XLOC_010594), lincRNA [TCONS_00021645]"	chr13:46255287-46255228	hs|13q14.13	Agilent_HUMAN_G3V2	ENST00000435067	ENST00000435067	chr13	 46255228	 46255287	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1374_PI429285431	2.3662803	A	3.0691886	A	0.61433253693868	0	lncRNA	1362-1_{1..2506}	"transcript_id ""ENST00000468646.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000468646.2"" | genecode_v17"	chr3	 72084451	 72086956	-	ENSG00000241163.2	ENST00000468646.2	RP11-398A8.3	RP11-398A8.3-001	NA	NA	NA	inter
CUST_20692_PI429285431	4.334258	P	4.9170394	P	0.667675311464757	0	lncRNA	22328-1_{1..643}	lnc-CEL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CEL-1:1	chr9	136029566	136030208	+	lnc-CEL-1	lnc-CEL-1:1	ENSG00000227677.1	RP11-326L24.7	GBGT1	"hg19_refFlat_GBGT1:range=chr9:136028964-1360377995'pad=0,hg19_refFlat_GBGT1:range=chr9:136028964-1360377995'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50chr9:136028340-136039301"	NA	inner
CUST_27776_PI429285431	0.905615	A	0.89494926	A	1.00742032276743	0	lncRNA	29361-1_{1..2004}	n324996|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079172|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079172|-1.1901800|-0.3626153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324996|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079172|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079172|-1.1901800|-0.3626153	chr20	 36468071	 36470074	-	NA	NA	NA	NA	CTNNBL1	NA	chr20:36458071-36488858	inner
CUST_44147_PI429285431	1.6433225	A	0.8967329	A	1.67782192034067	0	lncRNA	48809-1_{1..2025}	"gi|410170463|ref|XR_171087.1| PREDICTED: Homo sapiens uncharacterized LOC100287063 (LOC100287063), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170463|ref|XR_171087.1| PREDICTED: Homo sapiens uncharacterized LOC100287063 (LOC100287063), misc_RNA"	NA	NA	NA	NA	NA	XR_171087.1	NA	NA	NA	NA	NA	Unknown
CUST_42964_PI429285431	7.700962	P	7.613439	P	1.06254430597069	0	lncRNA	46101-1_{1..121}	ENST00000384072 ncrna:snoRNA chromosome:GRCh37:11:93464145:93464265:-1 gene:ENSG00000206799 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384072 ncrna:snoRNA chromosome:GRCh37:11:93464145:93464265:-1 gene:ENSG00000206799 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 93464145	 93464265	-	ENSG00000206799	ENST00000384072	NA	NA	KIAA1731	NA	chr11:93454145-93463522	inter
CUST_12117_PI429285431	1.4696208	A	0.90921646	A	1.47468246440202	0	lncRNA	13713-1_{1..233}	lnc-C2CD4A-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2CD4A-5:1	chr15	 62897012	 62897244	+	lnc-C2CD4A-5	lnc-C2CD4A-5:1	XLOC_011280	linc-TLN2-1	NA	NA	NA	inter
CUST_34371_PI429285431	1.8868682	A	2.0031323	A	0.922573590715951	0	lncRNA	35857-2_{3001..3361}	n341238|BX537586|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3706|NULL|-1.0441800|-0.3884714	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341238|BX537586|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3706|NULL|-1.0441800|-0.3884714	chr7	 43666963	 43667323	-	NA	NA	NA	NA	STK17A	"hg19_refFlat_STK17A:range=chr7:43622843-436644415'pad=0,hg19_refFlat_STK17A:range=chr7:43622843-436644415'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90chr7:43653963-43666978"	NA	inner
LNCA_21_P0004528	6.8229823	P	6.8771424	P	0.963155004020418	0	lncRNA	TCONS_00010100	NA	NA	NA	NA	XLOC_004565	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004565), lincRNA [TCONS_00010100]"	chr5:135160225-135160284	hs|5q31.1	Agilent_HUMAN_G3V2	TCONS_00010100	TCONS_00010100	chr5	135160225	135160284	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30301_PI429285431	5.9161716	P	6.034711	P	0.921119730258679	0	lncRNA	32077-1_{1..525}	n335202|AY493738|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254929|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254929|1.6692200|-0.0731149	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335202|AY493738|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254929|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254929|1.6692200|-0.0731149	chr2	121554921	121555445	+	NA	NA	NA	NA	GLI2	NA	chr2:121554867-121738065	inner
CUST_12738_PI429285431	0.9016017	A	0.89939207	A	1.00153277230106	0	lncRNA	14363-1_{1..223}	lnc-RP11-187E13.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-187E13.1.1-1:1	chr14	 32023231	 32023453	+	lnc-RP11-187E13.1.1-1	lnc-RP11-187E13.1.1-1:1	XLOC_010790	linc-NUBPL-1	NUBPL	NA	chr14:32030591-32033433	inter
CUST_35810_PI429285431	4.1370335	P	4.0055666	P	1.09540692043534	0	lncRNA	37216-1_{1..2032}	n344486|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_34|NULL|-1.5416900|-0.2387917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344486|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_34|NULL|-1.5416900|-0.2387917	chr14	 23765123	 23767154	+	NA	NA	NA	NA	BCL2L2-PABPN1	NA	chr14:23775971-23779797	inter
CUST_24591_PI429285431	0.9050247	A	0.89955026	A	1.00380180123283	0	lncRNA	26140-1_{1..586}	lnc-RP11-115C10.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-115C10.1.1-1:1	chr11	126480556	126481141	+	lnc-RP11-115C10.1.1-1	lnc-RP11-115C10.1.1-1:1	ENSG00000257271.1	KIRREL3-AS1	KIRREL3	NA	chr11:126470556-126490843	inner
LNCA_21_P0011723	2.1793215	A	2.3902416	A	0.863986035747115	0	lncRNA	TCONS_l2_00012888	NA	NA	NA	NA	XLOC_l2_006937	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006937), lincRNA [TCONS_l2_00012888]"	chr19:15937955-15937896	hs|19p13.12	Agilent_HUMAN_G3V2	TCONS_l2_00012888	TCONS_l2_00012888	chr19	 15937896	 15937955	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009451	0.92171675	A	0.90741235	A	1.00996437154162	0	lncRNA	TCONS_00026274	NA	NA	NA	NA	XLOC_012622	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012622), lincRNA [TCONS_00026274]"	chr18:8991834-8991893	hs|18p11.22	Agilent_HUMAN_G3V2	TCONS_00026274	TCONS_00026274	chr18	  8991834	  8991893	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25866_PI429285431	3.0493565	A	3.657722	P	0.655939427076524	0	lncRNA	27387-1_{1..472}	lnc-ARRB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARRB2-1:1	chr17	  4608494	  4608965	+	lnc-ARRB2-1	lnc-ARRB2-1:1	ENSG00000244184.1	RP11-314A20.2	PELP1	NA	chr17:4598494-4607632	inter
CUST_38350_PI429285431	2.5066833	A	2.5072484	A	0.999608379231705	0	lncRNA	39394-1_{1..3000}	n382104|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vrk.2||0.5301040|-0.2365967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382104|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vrk.2||0.5301040|-0.2365967	chr13	111516333	111519332	-	NA	NA	NA	NA	ANKRD10	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_LOC100130451:range=chr2:214142441-2141488025'pad=0,hg19_refFlat_LOC100130451:range=chr2:214142441-2141488025'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00chr13:111530887-111532655"	NA	inter
LNCA_21_P0009796	3.0325637	P	2.7562993	A	1.21105501138236	0	lncRNA	TCONS_00027634	NA	NA	NA	NA	XLOC_013173	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013173), lincRNA [TCONS_00027634]"	chr19:57352789-57359360	hs|19q13.43	Agilent_HUMAN_G3V2	TCONS_00027634	TCONS_00027634	chr19	 57352789	 57359360	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9315_PI429285431	6.530381	P	6.9109564	P	0.768131170496857	0	lncRNA	10822-1_{1..733}	lnc-METTL11A-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-METTL11A-5:1	chr9	132173685	132174417	+	lnc-METTL11A-5	lnc-METTL11A-5:1	XLOC_007585	linc-METTL11A-4	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80"	NA	inter
CUST_30896_PI429285431	5.5966086	P	5.569912	P	1.01867694545674	0	lncRNA	32684-1_{1..216}	n336917|AY944071|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000333157|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000333157|-1.1874500|-0.1534392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336917|AY944071|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000333157|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000333157|-1.1874500|-0.1534392	chr16	  5804328	  5804543	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27806_PI429285431	0.9054662	A	0.8932318	A	1.00851629895778	0	lncRNA	29392-1_{1..565}	n325034|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078300|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078300|-1.3010400|-0.4647329	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325034|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078300|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078300|-1.3010400|-0.4647329	chr20	 22612299	 22612863	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23730_PI429285431	2.5182548	A	2.517283	A	1.00067382734979	0	lncRNA	25294-1_{1..557}	lnc-RP11-728F11.4.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-728F11.4.1-2:1	chr11	117692688	117693244	+	lnc-RP11-728F11.4.1-2	lnc-RP11-728F11.4.1-2:1	ENSG00000254844.2	RP11-728F11.3	FXYD6-FXYD2	NA	chr11:117690790-117702707	inner
CUST_37431_PI429285431	0.91205853	A	0.8947511	A	1.01206884408882	0	lncRNA	38533-1_{1..288}	n345882|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1431|NULL|-1.3081500|-0.2174156	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345882|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1431|NULL|-1.3081500|-0.2174156	chr12	 31264626	 31264913	-	NA	NA	NA	NA	OVOS2	NA	chr12:31267684-31277397	inter
CUST_16687_PI429285431	3.7522264	P	3.1733005	P	1.49373673352808	0	lncRNA	18392-1_{1..504}	lnc-CLTA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLTA-1:1	chr9	 36314995	 36315498	+	lnc-CLTA-1	lnc-CLTA-1:1	XLOC_007344	linc-MELK	NA	NA	NA	inter
CUST_45585_PI429285431	5.9798346	P	4.6303988	P	2.54812455541663	0	lncRNA	49977-1_{1..3000}	"gi|229577365|ref|NR_027634.1| Homo sapiens family with sequence similarity 35, member B2 (pseudogene) (FAM35B2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|229577365|ref|NR_027634.1| Homo sapiens family with sequence similarity 35, member B2 (pseudogene) (FAM35B2), non-coding RNA"	NW_003871068.1	  1960815	  1963814	+	439965	NR_027634.1	NA	NA	NA	NA	NA	Unknown
CUST_21453_PI429285431	3.8159065	P	4.745623	P	0.524961490402552	0	lncRNA	23072-1_{1..3000}	lnc-FAM40A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM40A-2:1	chr1	110616749	110619748	+	lnc-FAM40A-2	lnc-FAM40A-2:1	ENSG00000258686.1	RP4-773N10.5	ALX3	NA	chr1:110606749-110613322	inter
CUST_21730_PI429285431	4.8137474	P	4.147541	P	1.58689470015058	0	lncRNA	23340-1_{1..2852}	lnc-NRL-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-NRL-1:2	chr14	 24422983	 24425834	-	lnc-NRL-1	lnc-NRL-1:2	ENSG00000215256.3	DHRS4-AS1	DHRS4	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_DHRS4:range=chr14:24422998-244380805'pad=0,hg19_refFlat_DHRS4:range=chr14:24422998-244380805'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_DHRS4L2:range=chr14:24458157-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24458157-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_DHRS4L1:range=chr14:24505710-245201775'pad=0,hg19_refFlat_DHRS4L1:range=chr14:24505710-245201775'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70chr14:24422965-24433406"	NA	inner
CUST_13806_PI429285431	0.91880393	A	0.90917224	A	1.00669851412628	0	lncRNA	15448-1_{1..1637}	lnc-DNAJC19-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAJC19-2:2	chr3	181160162	181161798	-	lnc-DNAJC19-2	lnc-DNAJC19-2:2	XLOC_003343	linc-DNAJC19-6	NA	NA	NA	inter
CUST_23749_PI429285431	6.754935	P	6.9822025	P	0.854251333595343	0	lncRNA	25312-1_{1..418}	lnc-GABRG3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GABRG3-2:1	chr15	 28021603	 28022020	+	lnc-GABRG3-2	lnc-GABRG3-2:1	ENSG00000232394.1	AC090696.2	OCA2	NA	chr15:28011603-28031944	inner
LNCA_21_P0009605	2.0581167	A	1.2564368	A	1.74312967680535	0	lncRNA	TCONS_00026614	NA	NA	NA	NA	XLOC_012664	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012664), lincRNA [TCONS_00026614]"	chr18:37237486-37237545	hs|18q12.3	Agilent_HUMAN_G3V2	TCONS_00026614	TCONS_00026614	chr18	 37237486	 37237545	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25867_PI429285431	2.2069914	A	3.4074936	P	0.43512378933796	0	lncRNA	27388-1_{1..541}	lnc-JOSD1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JOSD1-1:3	chr22	 39077731	 39078271	-	lnc-JOSD1-1	lnc-JOSD1-1:3	ENSG00000228274.1	RP3-508I15.9	CBY1	"hg19_refFlat_CBY1:range=chr22:39064060-390692415'pad=0,hg19_refFlat_CBY1:range=chr22:39064060-390692415'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CBY1:range=chr22:39061600-390692415'pad=0,hg19_refFlat_CBY1:range=chr22:39061600-390692415'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00chr22:39067731-39069855"	NA	inter
CUST_31687_PI429285431	0.8897935	A	0.8881428	A	1.00114483287238	0	lncRNA	33434-1_{1..3000}	n338214|BC036212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|606|NULL|-1.0360700|-0.3418029	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338214|BC036212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|606|NULL|-1.0360700|-0.3418029	chr1	146730538	146733537	-	NA	NA	NA	NA	BCL9	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_CHD1L:range=chr1:146724344-1467671905'pad=0,hg19_refFlat_CHD1L:range=chr1:146724344-1467671905'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CHD1L:range=chr1:146726624-1467671905'pad=0,hg19_refFlat_CHD1L:range=chr1:146726624-1467671905'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CHD1L:range=chr1:146714354-1467671905'pad=0,hg19_refFlat_CHD1L:range=chr1:146714354-1467671905'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20chr1:146890733-146999699"	NA	inter
CUST_23751_PI429285431	0.88851476	A	1.3516781	A	0.725393971133968	0	lncRNA	25314-1_{1..683}	lnc-LIN54-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIN54-1:4	chr4	 83821487	 83822169	-	lnc-LIN54-1	lnc-LIN54-1:4	ENSG00000251022.1	RP11-163O17.1	SEC31A	NA	chr4:83811487-83812419	inter
CUST_32401_PI429285431	0.9169574	A	1.1049174	A	0.877846136335086	0	lncRNA	34077-1_{1..3000}	n338994|BC042876|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1423|NULL|-1.1777000|-0.3404797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338994|BC042876|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1423|NULL|-1.1777000|-0.3404797	chr2	163625445	163628444	+	NA	NA	NA	NA	KCNH7	NA	chr2:163615445-163664482	inner
CUST_15217_PI429285431	1.3106389	A	1.7953606	A	0.71463491169365	0	lncRNA	16887-1_{1..498}	lnc-RP11-723O4.6.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-723O4.6.1-1:2	chr3	128719987	128720484	-	lnc-RP11-723O4.6.1-1	lnc-RP11-723O4.6.1-1:2	XLOC_003245	linc-KIAA1257	KIAA1257	NA	chr3:128709987-128712986	inter
CUST_21673_PI429285431	0.9148256	A	1.2230729	A	0.807622326922023	0	lncRNA	23283-1_{1..658}	lnc-CISD2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CISD2-4:2	chr4	104514445	104515102	+	lnc-CISD2-4	lnc-CISD2-4:2	ENSG00000251577.1	RP11-297P16.3	TACR3	NA	chr4:104510625-104524574	inner
CUST_17761_PI429285431	4.469199	P	4.9545627	P	0.714316969555282	0	lncRNA	19493-1_{1..806}	lnc-PPP4R1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP4R1-2:4	chr18	  9334135	  9334940	-	lnc-PPP4R1-2	lnc-PPP4R1-2:4	XLOC_012754	linc-LAMA1-5	TWSG1	"hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40chr18:9334765-9344313"	NA	inter
CUST_49301_PI429285431	1.1251464	A	0.9139434	A	1.15765309759856	0	lncRNA	53118-1_{1..1483}	hg19_lincRNAsTranscripts_TCONS_l2_00022783 range=chr5:7302009-7307305 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022783 range=chr5:7302009-7307305 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	  7302009	  7303491	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20"	NA	inter
CUST_22371_PI429285431	0.90974796	A	0.9129846	A	0.997759046802704	0	lncRNA	23965-1_{1..772}	lnc-MEP1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MEP1B-1:1	chr18	 29870228	 29870999	+	lnc-MEP1B-1	lnc-MEP1B-1:1	ENSG00000264982.1	RP11-344B2.2	FAM59A	"hg19_refFlat_GAREM:range=chr18:29847834-300503915'pad=0,hg19_refFlat_GAREM:range=chr18:29847834-300503915'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70chr18:29860228-29880303"	NA	inner
LNCA_21_P0014695	4.94346	P	4.347068	P	1.51193068478223	0	lncRNA	XR_111771	XR_111771	XR_111771	NA	NA	LOC100509075	uncharacterized LOC100509075	NA	THC2603027	NA	"PREDICTED: Homo sapiens hypothetical LOC100509075, transcript variant 1 (LOC100509075), miscRNA [XR_111771]"	chr18:44526200-44526837	hs|18q21.1	Agilent_HUMAN_G3V2	XR_111771	XR_111771	chr18	 44526200	 44526837	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_868_PI429285431	0.92113227	A	0.9020177	A	1.01333737000851	0	lncRNA	862-1_{1..1046}	"transcript_id ""ENST00000413185.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000413185.2"" | genecode_v17"	chr2	 47558519	 47559564	-	ENSG00000234690.2	ENST00000413185.2	AC073283.4	AC073283.4-004	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10"	NA	inter
CUST_28839_PI429285431	5.370073	P	5.2096953	P	1.11757968402613	0	lncRNA	30547-1_{1..1204}	n326253|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000089833|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000089833|0.8216830|-0.2961060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326253|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000089833|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000089833|0.8216830|-0.2961060	chr1	209879659	209880862	+	NA	NA	NA	NA	HSD11B1	NA	chr1:209869659-209904546	inner
CUST_24542_PI429285431	3.360101	P	4.0816064	P	0.60646428840836	0	lncRNA	26092-1_{1..1382}	lnc-SAP30-5:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:18	chr4	174459214	174460595	+	lnc-SAP30-5	lnc-SAP30-5:18	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174449214-174451378	inter
CUST_45344_PI429285431	1.3667401	A	0.8914635	A	1.39018472677931	0	lncRNA	49782-1_{1..1883}	"gi|223468679|ref|NR_026801.1| Homo sapiens family with sequence similarity 74, member A3 (FAM74A3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">gi|223468679|ref|NR_026801.1| Homo sapiens family with sequence similarity 74, member A3 (FAM74A3), non-coding RNA"	Chr9	 40715524	 40717406	+	728495	NR_026801.1	NA	NA	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.76;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80"	NA	inter
CUST_3750_PI429285431	3.441196	P	3.396052	A	1.03178616003401	0	lncRNA	3719-1_{1..829}	"transcript_id ""ENST00000495430.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000495430.1"" | genecode_v17"	chr10	 81564241	 81565069	-	ENSG00000225484.2	ENST00000495430.1	RP11-773D16.1	RP11-773D16.1-004	NA	NA	NA	inter
CUST_726_PI429285431	1.7161098	A	1.8243028	A	0.92774935626707	0	lncRNA	719-1_{1..243}	"transcript_id ""ENST00000417930.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417930.1"" | genecode_v17"	chr2	  7865932	  7866174	+	ENSG00000235576.1	ENST00000417930.1	AC092580.4	AC092580.4-001	NA	NA	NA	inter
CUST_39336_PI429285431	3.9497657	P	3.0366912	A	1.88305416648138	0	lncRNA	40303-1_{1..3000}	n386398|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010jbc.2||-0.8690270|-0.3264184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n386398|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010jbc.2||-0.8690270|-0.3264184	chr5	 92877577	 92880576	-	NA	NA	NA	NA	NR2F1	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40chr5:92919043-92926738"	NA	inter
CUST_31988_PI429285431	17.679905	P	17.585659	P	1.06750734769014	0	lncRNA	33710-1_{1..1972}	n338547|BC039356|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|951|NULL|1.9804100|-0.1997484	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n338547|BC039356|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|951|NULL|1.9804100|-0.1997484	chr1	227581291	227583262	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29055_PI429285431	1.4597855	A	2.2250292	A	0.588353975480225	0	lncRNA	30784-1_{1..3000}	n326545|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027492|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027492|2.8335300|-0.3011660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326545|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027492|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027492|2.8335300|-0.3011660	chr1	 83814046	 83817045	-	NA	NA	NA	NA	NA	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-26.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-25.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
CUST_50622_PI429285431	6.2555866	P	5.1548376	P	2.14466007333977	0	lncRNA	54306-1_{1..245}	hg19_lincRNAsTranscripts_TCONS_l2_00003387 range=chr10:6335137-6335689 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003387 range=chr10:6335137-6335689 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	  6335137	  6335381	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002010	6.00163	P	6.2043204	P	0.868928635810276	0	lncRNA	ENST00000454043	NA	NA	NA	NA	XLOC_001974	NA	ENST00000454043	NA	NA	"BROAD Institute lincRNA (XLOC_001974), lincRNA [TCONS_00003195]"	chr2:8180158-8180099	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000454043	ENST00000454043	chr2	  8180099	  8180158	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40417_PI429285431	9.557167	P	9.060603	P	1.41084940311353	0	lncRNA	41202-1_{1..1895}	n409283|NR_033489_3|lncRNA|Homosapiens||RefGeneNoncode|NR_033489_3||-0.8320150|-0.2855222	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409283|NR_033489_3|lncRNA|Homosapiens||RefGeneNoncode|NR_033489_3||-0.8320150|-0.2855222	chr6	  2985531	  2987425	-	NA	NA	NA	NA	NQO2	"hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70chr6:3000067-3011955"	NA	inner
CUST_15573_PI429285431	0.91798395	A	1.0403924	A	0.918652761394561	0	lncRNA	17257-1_{1..752}	lnc-C15orf2-9:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-9:6	chr15	 24523358	 24524109	+	lnc-C15orf2-9	lnc-C15orf2-9:6	XLOC_011174	linc-C15orf2-8	NA	NA	NA	inter
CUST_50166_PI429285431	7.3740625	P	7.0451355	P	1.25607882226843	0	lncRNA	53892-1_{1..402}	hg19_lincRNAsTranscripts_TCONS_l2_00028631 range=chr9:14997256-15019645 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028631 range=chr9:14997256-15019645 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 14997256	 14997657	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43784_PI429285431	1.05237	A	0.91000634	A	1.10371191753715	0	lncRNA	48515-1_{1..761}	"gi|310118870|ref|XR_109907.1| PREDICTED: Homo sapiens uncharacterized LOC100506014, transcript variant 1 (LOC100506014), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310118870|ref|XR_109907.1| PREDICTED: Homo sapiens uncharacterized LOC100506014, transcript variant 1 (LOC100506014), misc_RNA"	Chr2	  3579403	  3580163	-	100506014	XR_109907.1	NA	NA	NA	NA	NA	inter
CUST_8227_PI429285431	0.9220284	A	0.92105985	A	1.00067157310604	0	lncRNA	9818-1_{1..504}	lnc-TRPM7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRPM7-1:1	chr15	 51025117	 51025620	-	lnc-TRPM7-1	lnc-TRPM7-1:1	ENSG00000250395	ENST00000506446	SPPL2A	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50chr15:51015117-51035495"	NA	inner
CUST_26307_PI429285431	2.2559338	A	2.6848183	A	0.74283592827961	0	lncRNA	27813-1_{1..550}	lnc-SMPD3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMPD3-2:1	chr16	 68679883	 68680432	-	lnc-SMPD3-2	lnc-SMPD3-2:1	ENSG00000260577.1	RP11-615I2.2	CDH3	"hg19_refFlat_CDH3:range=chr16:68679283-687323035'pad=0,hg19_refFlat_CDH3:range=chr16:68679283-687323035'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.70chr16:68678151-68690071"	NA	inner
CUST_45296_PI429285431	3.597455	P	3.390001	P	1.15464871539268	0	lncRNA	49741-2_{3001..3518}	"gi|390979640|ref|NR_052005.1| Homo sapiens CD274 molecule (CD274), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|390979640|ref|NR_052005.1| Homo sapiens CD274 molecule (CD274), transcript variant 3, non-coding RNA"	Chr9	  5453503	  5454020	+	29126	NR_052005.1	NA	NA	NA	NA	NA	inter
CUST_21847_PI429285431	1.8331418	A	1.8022436	A	1.02164799025406	0	lncRNA	23457-1_{1..2424}	lnc-SULT1A3.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SULT1A3.1-1:4	chr16	 30215129	 30217552	+	lnc-SULT1A3.1-1	lnc-SULT1A3.1-1:4	ENSG00000213599.5	SULT1A3	SULT1A3	NA	chr16:30210549-30215650	inner
CUST_6279_PI429285431	1.7299745	A	1.0596935	A	1.59138289790746	0	lncRNA	6203-1_{1..573}	"transcript_id ""ENST00000579769.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579769.1"" | genecode_v17"	chr18	 76240549	 76241121	+	ENSG00000265644.1	ENST00000579769.1	RP11-451L19.1	RP11-451L19.1-001	NA	NA	NA	inter
CUST_46551_PI429285431	5.4406123	P	6.4392986	P	0.500455501080861	0	lncRNA	50735-1_{1..1889}	"gi|255683421|ref|NR_028287.1| Homo sapiens GABA(A) receptors associated protein like 3, pseudogene (GABARAPL3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|255683421|ref|NR_028287.1| Homo sapiens GABA(A) receptors associated protein like 3, pseudogene (GABARAPL3), non-coding RNA"	Chr15	 90889759	 90891647	-	23766	NR_028287.1	NA	NA	NA	NA	NA	inter
CUST_39264_PI429285431	2.8364353	A	1.7895515	A	2.06606236035466	0	lncRNA	40236-1_{1..3000}	n386173|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010cpk.1||1.7716100|-0.3396480	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386173|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010cpk.1||1.7716100|-0.3396480	chr17	 16690205	 16693204	+	NA	NA	NA	NA	NA	"hg19_refFlat_SRP68:range=chr17:74035787-740685725'pad=0,hg19_refFlat_SRP68:range=chr17:74035787-740685725'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SRP68:range=chr17:74035787-740465685'pad=0,hg19_refFlat_SRP68:range=chr17:74035787-740465685'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
LNCA_21_P0009520	0.9650548	A	1.7033222	A	0.599458838367438	0	lncRNA	TCONS_00026401	NA	NA	NA	NA	XLOC_012751	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012751), lincRNA [TCONS_00026401]"	chr18:9010242-9010183	hs|18p11.22	Agilent_HUMAN_G3V2	TCONS_00026401	TCONS_00026401	chr18	  9010183	  9010242	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35364_PI429285431	0.9108545	A	0.90133893	A	1.00661748998478	0	lncRNA	36772-2_{3001..3455}	n342405|BC036321|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4897|NULL|-1.1798400|-0.3451269	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342405|BC036321|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4897|NULL|-1.1798400|-0.3451269	chr13	 52706026	 52706480	+	NA	NA	NA	NA	NEK5	NA	chr13:52693026-52703214	inner
CUST_13487_PI429285431	3.87556	P	4.25137	P	0.770672597687555	0	lncRNA	15125-1_{1..1576}	lnc-KIAA0930-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA0930-2:3	chr22	 45534705	 45536280	-	lnc-KIAA0930-2	lnc-KIAA0930-2:3	XLOC_014394	linc-PHF21B	NA	NA	NA	inter
CUST_39039_PI429285431	3.8321328	P	3.6676364	P	1.12077478209496	0	lncRNA	40019-1_{1..822}	n385437|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ypj.2||-1.1114700|-0.2103277	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n385437|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ypj.2||-1.1114700|-0.2103277	chr8	122966846	122967667	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29232_PI429285431	3.500139	P	2.96416	A	1.44992572747472	0	lncRNA	30983-1_{1..972}	n326763|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007037|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007037|-0.9695520|-0.1998058	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326763|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007037|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007037|-0.9695520|-0.1998058	chr1	   154267	   155238	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11437_PI429285431	4.1665335	P	4.6495934	P	0.71545855390181	0	lncRNA	13005-1_{1..496}	lnc-ASB7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASB7-2:1	chr15	101274000	101274495	+	lnc-ASB7-2	lnc-ASB7-2:1	XLOC_011387	linc-ALDH1A3-2	NA	NA	NA	inter
CUST_5116_PI429285431	0.90457326	A	0.89552534	A	1.00629124752321	0	lncRNA	5056-1_{1..877}	"transcript_id ""ENST00000557426.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557426.1"" | genecode_v17"	chr15	 26295685	 26296561	-	ENSG00000258931.1	ENST00000557426.1	RP11-1084I9.2	RP11-1084I9.2-001	NA	NA	NA	inter
CUST_37470_PI429285431	3.6052709	P	2.8955843	A	1.6354488061756	0	lncRNA	38570-1_{1..2590}	n345926|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1475|NULL|-1.6646900|-0.2685406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n345926|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1475|NULL|-1.6646900|-0.2685406	chr5	159895252	159897841	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39555_PI429285431	4.073293	P	4.0310802	P	1.02969195356741	0	lncRNA	40499-1_{1..1064}	n387497|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011fun.1||-0.6792530|-0.3814407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387497|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011fun.1||-0.6792530|-0.3814407	chr6	  1187370	  1188433	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002451	0.9976858	A	0.92702544	A	1.05019727692916	0	lncRNA	ENST00000416111	NA	BC038779	NA	Hs.385770	XLOC_002117	NA	ENST00000416111	THC2608039	NA	"BROAD Institute lincRNA (XLOC_002117), lincRNA [TCONS_00004280]"	chr2:62839186-62839127	hs|2p15	Agilent_HUMAN_G3V2	ENST00000416111	ENST00000416111	chr2	 62839127	 62839186	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39048_PI429285431	1.612149	A	3.0403712	A	0.371588510639813	0	lncRNA	40026-1_{1..1944}	n385479|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zln.1||0.7764240|-0.2545511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385479|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zln.1||0.7764240|-0.2545511	chr9	 14987299	 14989242	-	NA	NA	NA	NA	NA	"hg19_refFlat_C4orf27:range=chr4:170650729-1706790285'pad=0,hg19_refFlat_C4orf27:range=chr4:170650729-1706790285'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40"	NA	inter
LNCA_21_P0014752	3.0594382	A	3.6049774	P	0.685135288771297	0	lncRNA	XR_132490	XR_132490	XR_132490	NA	NA	LOC100130171	hematological and neurological expressed 1 pseudogene	NA	NA	NA	"PREDICTED: Homo sapiens hematological and neurological expressed 1 protein-like (LOC100130171), miscRNA [XR_132490]"	chr2:174296698-174296639	hs|2q31.1	Agilent_HUMAN_G3V2	XR_132490	XR_132490	chr2	174296639	174296698	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49225_PI429285431	4.5654545	P	4.6454773	P	0.946042695579796	0	lncRNA	53045-1_{1..734}	hg19_lincRNAsTranscripts_TCONS_l2_00021471 range=chr4:187348147-187422626 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021471 range=chr4:187348147-187422626 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	187348147	187348880	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50991_PI429285431	0.9025697	A	0.8999275	A	1.00183311157906	0	lncRNA	54636-1_{1..969}	hg19_lincRNAsTranscripts_TCONS_l2_00005995 range=chr12:127220909-127227460 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005995 range=chr12:127220909-127227460 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	127220909	127221877	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16709_PI429285431	4.400717	P	4.3874125	P	1.00926463010608	0	lncRNA	18415-1_{1..430}	lnc-DEPDC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DEPDC1-1:1	chr1	 69498916	 69499345	-	lnc-DEPDC1-1	lnc-DEPDC1-1:1	XLOC_000865	linc-DEPDC1-1	NA	NA	NA	inter
LNCA_21_P0011169	0.9117254	A	0.91638255	A	0.996777114289944	0	lncRNA	ENST00000453176	NA	NA	NA	NA	XLOC_l2_003881	NA	ENST00000453176	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003881), lincRNA [TCONS_l2_00007045]"	chr13:19314126-19313198	hs|13q11	Agilent_HUMAN_G3V2	ENST00000453176	ENST00000453176	chr13	 19313198	 19314126	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35420_PI429285431	1.4623995	A	1.827874	A	0.776213537671496	0	lncRNA	36830-1_{1..1112}	n342484|BC018099|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4978|NULL|-0.7374850|-0.2564341	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342484|BC018099|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4978|NULL|-0.7374850|-0.2564341	chr2	243029501	243030612	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41671_PI429285431	2.8369915	A	2.6426556	A	1.14419734353029	0	lncRNA	43105-1_{1..78}	ENST00000408112 ncrna:miRNA chromosome:GRCh37:22:20236657:20236734:-1 gene:ENSG00000221039 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408112 ncrna:miRNA chromosome:GRCh37:22:20236657:20236734:-1 gene:ENSG00000221039 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 20236657	 20236734	-	ENSG00000221039	ENST00000408112	NA	NA	RTN4R	NA	chr22:20228938-20246734	inner
CUST_29371_PI429285431	4.9488583	P	3.4032762	P	2.91921829993487	0	lncRNA	31123-1_{1..492}	n332637|AB020969|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000058648|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000058648|-0.9503770|-0.4333654	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332637|AB020969|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000058648|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000058648|-0.9503770|-0.4333654	chr4	103183266	103183757	-	NA	NA	NA	NA	SLC39A8	NA	chr4:103173266-103193758	inner
CUST_44502_PI429285431	0.89669526	A	0.8988458	A	0.998510469715392	0	lncRNA	49102-1_{1..3000}	"gi|224282143|ref|NR_027026.1| Homo sapiens glucuronidase, beta pseudogene 1 (GUSBP1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224282143|ref|NR_027026.1| Homo sapiens glucuronidase, beta pseudogene 1 (GUSBP1), transcript variant 1, non-coding RNA"	Chr5	 21459589	 21462588	+	728411	NR_027026.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00"	NA	inter
CUST_33941_PI429285431	1.0667841	A	1.8274608	A	0.590219421765746	0	lncRNA	35481-1_{1..2080}	n340741|AF244573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3204|NULL|-1.0462200|-0.2113652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340741|AF244573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3204|NULL|-1.0462200|-0.2113652	chr5	172084251	172086330	+	NA	NA	NA	NA	NEURL1B	NA	chr5:172074251-172096340	inner
CUST_50015_PI429285431	0.9163464	A	0.92622566	A	0.993175611412444	0	lncRNA	53752-1_{1..315}	hg19_lincRNAsTranscripts_TCONS_l2_00027552 range=chr8:846698-860569 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027552 range=chr8:846698-860569 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	   846698	   847012	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5796_PI429285431	0.92639583	A	0.9191283	A	1.00505017730276	0	lncRNA	5718-1_{1..721}	"transcript_id ""ENST00000587058.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587058.1"" | genecode_v17"	chr17	 26546311	 26547031	+	ENSG00000267644.1	ENST00000587058.1	CTD-2008P7.10	CTD-2008P7.10-001	NA	NA	NA	inter
CUST_51576_PI429285431	0.90673935	A	0.91559416	A	0.99388111053581	0	lncRNA	55141-1_{1..326}	hg19_lincRNAsTranscripts_TCONS_l2_00010607 range=chr17:19532865-19534171 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010607 range=chr17:19532865-19534171 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 19532865	 19533190	+	NA	NA	NA	NA	ALDH3A2	NA	chr17:19522865-19544171	inter
CUST_17310_PI429285431	3.67417	P	3.9738426	P	0.81243674689746	0	lncRNA	19028-1_{1..950}	lnc-GLI2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLI2-3:1	chr2	121361343	121362292	+	lnc-GLI2-3	lnc-GLI2-3:1	XLOC_001642	linc-GLI2-2	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00"	NA	inter
CUST_45162_PI429285431	0.9001415	A	0.899945	A	1.00013621269709	0	lncRNA	49638-1_{1..2842}	"gi|213418006|ref|NR_024473.1| Homo sapiens uncharacterized LOC286135 (LOC286135), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|213418006|ref|NR_024473.1| Homo sapiens uncharacterized LOC286135 (LOC286135), non-coding RNA"	NA	NA	NA	NA	NA	NR_024473.1	NA	NA	NA	"hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30"	NA	Unknown
CUST_12369_PI429285431	0.9204035	A	0.92112744	A	0.999498328909149	0	lncRNA	13981-1_{1..1083}	lnc-TRIML2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIML2-6:1	chr4	189739480	189740562	-	lnc-TRIML2-6	lnc-TRIML2-6:1	XLOC_004227	linc-TRIML2-2	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60"	NA	inter
CUST_19483_PI429285431	0.9072636	A	0.9072757	A	0.999991612954287	0	lncRNA	21139-2_{3001..4273}	lnc-SAP30-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:4	chr4	174462214	174463486	+	lnc-SAP30-5	lnc-SAP30-5:4	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174449214-174451378	inter
CUST_34811_PI429285431	7.804863	P	6.6325126	P	2.25378578724893	0	lncRNA	36245-2_{3001..4649}	n341717|BX538228|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4189|NULL|-1.1893500|-0.2872229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341717|BX538228|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4189|NULL|-1.1893500|-0.2872229	chr9	 91623685	 91625333	-	NA	NA	NA	NA	S1PR3	NA	chr9:91610685-91619925	inner
CUST_12438_PI429285431	1.9317423	A	1.7285088	A	1.15127581008588	0	lncRNA	14051-1_{1..226}	lnc-RNF152-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF152-1:1	chr18	 59577528	 59577753	-	lnc-RNF152-1	lnc-RNF152-1:1	XLOC_012863	linc-RNF152	NA	NA	NA	inter
CUST_29852_PI429285431	4.1941433	P	4.5340614	P	0.790086162797384	0	lncRNA	31615-1_{1..642}	n333751|L07517|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191834|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191834|-0.2598950|-0.2145757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333751|L07517|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191834|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191834|-0.2598950|-0.2145757	chr11	  1017313	  1017954	+	NA	NA	NA	NA	AP2A2	"hg19_refFlat_MUC6:range=chr11:1013456-10366555'pad=0,hg19_refFlat_MUC6:range=chr11:1013456-10366555'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30chr11:1007313-1012245"	NA	inner
CUST_28265_PI429285431	2.3287442	A	2.5531995	A	0.855918122794077	0	lncRNA	29900-1_{1..321}	n325557|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256096|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256096|-1.0040200|-0.3809125	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325557|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256096|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256096|-1.0040200|-0.3809125	chr17	 29830443	 29830763	+	NA	NA	NA	NA	RAB11FIP4	NA	chr17:29820443-29841060	inner
CUST_31184_PI429285431	5.4303126	P	5.8471813	P	0.749048635194733	0	lncRNA	32979-1_{1..2055}	n337624|AK129568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3|NULL|-1.2020400|-0.3572422	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337624|AK129568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3|NULL|-1.2020400|-0.3572422	chrX	  7407699	  7409753	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90"	NA	inter
CUST_47886_PI429285431	0.92155147	A	0.91030276	A	1.00782748747191	0	lncRNA	51781-1_{1..2407}	"gi|410171641|ref|XR_171302.1| PREDICTED: Homo sapiens ZNF638 intronic transcript 1 (non-protein coding) (ZNF638-IT1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410171641|ref|XR_171302.1| PREDICTED: Homo sapiens ZNF638 intronic transcript 1 (non-protein coding) (ZNF638-IT1), misc_RNA"	NA	NA	NA	NA	NA	XR_171302.1	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20"	NA	Unknown
CUST_17442_PI429285431	2.9647691	A	2.314183	A	1.56980580547008	0	lncRNA	19166-1_{1..427}	lnc-PREX1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PREX1-6:1	chr20	 46988546	 46988972	-	lnc-PREX1-6	lnc-PREX1-6:1	XLOC_013775	linc-SULF2-8	NA	NA	NA	inter
CUST_26629_PI429285431	6.7416644	P	6.5988345	P	1.10406866500653	0	lncRNA	28132-1_{1..546}	lnc-COPZ1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COPZ1-1:1	chr12	 54860625	 54861170	+	lnc-COPZ1-1	lnc-COPZ1-1:1	ENSG00000258086.1	RP11-753H16.5	GTSF1	"hg19_refFlat_ITGA5:range=chr12:54790077-548129825'pad=0,hg19_refFlat_ITGA5:range=chr12:54790077-548129825'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70chr12:54850625-54867386"	NA	inner
CUST_47376_PI429285431	2.4914231	A	1.6699133	A	1.76725448105086	0	lncRNA	51424-1_{1..1050}	"gi|310124055|ref|XR_109669.1| PREDICTED: Homo sapiens uncharacterized LOC388820 (LOC388820), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124055|ref|XR_109669.1| PREDICTED: Homo sapiens uncharacterized LOC388820 (LOC388820), misc_RNA"	NA	NA	NA	NA	NA	XR_109669.1	NA	NA	NA	NA	NA	Unknown
CUST_51854_PI429285431	4.342401	P	4.306034	P	1.02552808368678	0	lncRNA	55409-1_{1..1526}	hg19_lincRNAsTranscripts_TCONS_l2_00012612 range=chr19:50472301-50474212 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012612 range=chr19:50472301-50474212 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 50472301	 50473826	+	NA	NA	NA	NA	SIGLEC11	"hg19_refFlat_LOC100129083:range=chr19:51919279-519204175'pad=0,hg19_refFlat_LOC100129083:range=chr19:51919279-519204175'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.30chr19:50462301-50464429"	NA	inter
CUST_26753_PI429285431	0.9193954	A	0.9060466	A	1.00929562148562	0	lncRNA	28251-1_{1..304}	n323803|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058522|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058522|-1.1946700|-0.5312961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323803|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058522|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058522|-1.1946700|-0.5312961	chrX	136466015	136466318	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34159_PI429285431	0.9109223	A	0.89979255	A	1.00774438867991	0	lncRNA	35677-1_{1..325}	n341003|AJ011593|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3469|NULL|-0.8685890|-0.3241333	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341003|AJ011593|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3469|NULL|-0.8685890|-0.3241333	chr11	 27781806	 27782130	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11421_PI429285431	0.8977617	A	1.0216179	A	0.917731352225598	0	lncRNA	12988-1_{1..1843}	lnc-GLI2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLI2-4:2	chr2	121338061	121339903	+	lnc-GLI2-4	lnc-GLI2-4:2	XLOC_001641	linc-GLI2-3	NA	NA	NA	inter
CUST_13605_PI429285431	0.8956559	A	1.0773306	A	0.881678937148429	0	lncRNA	15244-1_{1..872}	lnc-LSR-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LSR-1:4	chr19	 35706538	 35707409	+	lnc-LSR-1	lnc-LSR-1:4	XLOC_013049	linc-LSR	FAM187B	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-25.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.50chr19:35715704-35716780"	NA	inter
CUST_20032_PI429285431	1.9961421	A	1.8297327	A	1.12226190460919	0	lncRNA	21685-1_{1..3000}	lnc-CEMP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CEMP1-1:2	chr16	  2611472	  2614471	-	lnc-CEMP1-1	lnc-CEMP1-1:2	ENSG00000261613.1	RP11-20I23.8	PDPK1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PDPK1:range=chr16:2588114-26476735'pad=0,hg19_refFlat_PDPK1:range=chr16:2588114-26476735'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PDPK1:range=chr16:2588114-26477685'pad=0,hg19_refFlat_PDPK1:range=chr16:2588114-26477685'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30chr16:2601472-2625097"	NA	inner
CUST_30129_PI429285431	10.367383	P	10.198044	P	1.12454313438883	0	lncRNA	31902-1_{1..544}	n334772|AJ223602|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244843|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244843|-1.3328700|-0.1659887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334772|AJ223602|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244843|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244843|-1.3328700|-0.1659887	chr6	 31323944	 31324487	+	NA	NA	NA	NA	HLA-B	"hg19_refFlat_HLA-B:range=chr6_mann_hap4:2668715-26713905'pad=0,hg19_refFlat_HLA-B:range=chr6_mann_hap4:2668715-26713905'pad=0 3'pad=0 strand=- repeatMasking=none,-105.30;hg19_refFlat_HLA-C:range=chr6_cox_hap2:2750201-27531035'pad=0,hg19_refFlat_HLA-C:range=chr6_cox_hap2:2750201-27531035'pad=0 3'pad=0 strand=- repeatMasking=none,-100.90;hg19_refFlat_HLA-C:range=chr6_ssto_hap7:2570423-25733175'pad=0,hg19_refFlat_HLA-C:range=chr6_ssto_hap7:2570423-25733175'pad=0 3'pad=0 strand=- repeatMasking=none,-100.90;hg19_refFlat_HLA-E:range=chr6_dbb_hap3:1750949-17539985'pad=0,hg19_refFlat_HLA-E:range=chr6_dbb_hap3:1750949-17539985'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.40;hg19_refFlat_HLA-A:range=chr6_dbb_hap3:1203692-12066085'pad=0,hg19_refFlat_HLA-A:range=chr6_dbb_hap3:1203692-12066085'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_HLA-C:range=chr6_dbb_hap3:2532552-25354465'pad=0,hg19_refFlat_HLA-C:range=chr6_dbb_hap3:2532552-25354465'pad=0 3'pad=0 strand=- repeatMasking=none,-100.40;hg19_refFlat_HLA-A:range=chr6_apd_hap1:1150217-11531195'pad=0,hg19_refFlat_HLA-A:range=chr6_apd_hap1:1150217-11531195'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.20;hg19_refFlat_HLA-E:range=chr6_mcf_hap5:1839173-18422225'pad=0,hg19_refFlat_HLA-E:range=chr6_mcf_hap5:1839173-18422225'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.40;hg19_refFlat_HLA-E:range=chr6:30457309-304603585'pad=0,hg19_refFlat_HLA-E:range=chr6:30457309-304603585'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.40;hg19_refFlat_HLA-B:range=chr6:31322260-313249355'pad=0,hg19_refFlat_HLA-B:range=chr6:31322260-313249355'pad=0 3'pad=0 strand=- repeatMasking=none,-106.10;hg19_refFlat_HLA-G:range=chr6:29795622-297981595'pad=0,hg19_refFlat_HLA-G:range=chr6:29795622-297981595'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10;hg19_refFlat_HLA-B:range=chr6_cox_hap2:2834949-28376235'pad=0,hg19_refFlat_HLA-B:range=chr6_cox_hap2:2834949-28376235'pad=0 3'pad=0 strand=- repeatMasking=none,-106.10;hg19_refFlat_HLA-B:range=chr6_qbl_hap6:2615766-26184515'pad=0,hg19_refFlat_HLA-B:range=chr6_qbl_hap6:2615766-26184515'pad=0 3'pad=0 strand=- repeatMasking=none,-106.10;hg19_refFlat_HLA-A:range=chr6:29910331-299132325'pad=0,hg19_refFlat_HLA-A:range=chr6:29910331-299132325'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_HLA-G:range=chr6_mcf_hap5:1095901-10984385'pad=0,hg19_refFlat_HLA-G:range=chr6_mcf_hap5:1095901-10984385'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10;hg19_refFlat_HLA-C:range=chr6_mcf_hap5:2617482-26203755'pad=0,hg19_refFlat_HLA-C:range=chr6_mcf_hap5:2617482-26203755'pad=0 3'pad=0 strand=- repeatMasking=none,-100.90;hg19_refFlat_HLA-A:range=chr6_cox_hap2:1422082-14249845'pad=0,hg19_refFlat_HLA-A:range=chr6_cox_hap2:1422082-14249845'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.20;hg19_refFlat_HLA-C:range=chr6_mann_hap4:2583839-25867335'pad=0,hg19_refFlat_HLA-C:range=chr6_mann_hap4:2583839-25867335'pad=0 3'pad=0 strand=- repeatMasking=none,-100.90;hg19_refFlat_HLA-E:range=chr6_cox_hap2:1969373-19724225'pad=0,hg19_refFlat_HLA-E:range=chr6_cox_hap2:1969373-19724225'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.40;hg19_refFlat_HLA-A:range=chr6_qbl_hap6:1203109-12060255'pad=0,hg19_refFlat_HLA-A:range=chr6_qbl_hap6:1203109-12060255'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.80;hg19_refFlat_HLA-G:range=chr6_qbl_hap6:1096207-10987445'pad=0,hg19_refFlat_HLA-G:range=chr6_qbl_hap6:1096207-10987445'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10;hg19_refFlat_HLA-G:range=chr6_dbb_hap3:1096243-10987805'pad=0,hg19_refFlat_HLA-G:range=chr6_dbb_hap3:1096243-10987805'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10;hg19_refFlat_HLA-G:range=chr6_cox_hap2:1311513-13140505'pad=0,hg19_refFlat_HLA-G:range=chr6_cox_hap2:1311513-13140505'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10;hg19_refFlat_HLA-B:range=chr6_ssto_hap7:2656019-26586945'pad=0,hg19_refFlat_HLA-B:range=chr6_ssto_hap7:2656019-26586945'pad=0 3'pad=0 strand=- repeatMasking=none,-105.30;hg19_refFlat_HLA-G:range=chr6_ssto_hap7:1133174-11357115'pad=0,hg19_refFlat_HLA-G:range=chr6_ssto_hap7:1133174-11357115'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10;hg19_refFlat_HLA-C:range=chr6_qbl_hap6:2530195-25330895'pad=0,hg19_refFlat_HLA-C:range=chr6_qbl_hap6:2530195-25330895'pad=0 3'pad=0 strand=- repeatMasking=none,-100.90;hg19_refFlat_HLA-A:range=chr6_mann_hap4:1202716-12056335'pad=0,hg19_refFlat_HLA-A:range=chr6_mann_hap4:1202716-12056335'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_HLA-C:range=chr6:31236946-312398485'pad=0,hg19_refFlat_HLA-C:range=chr6:31236946-312398485'pad=0 3'pad=0 strand=- repeatMasking=none,-100.90;hg19_refFlat_HLA-E:range=chr6_ssto_hap7:1789599-17926485'pad=0,hg19_refFlat_HLA-E:range=chr6_ssto_hap7:1789599-17926485'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.40;hg19_refFlat_HLA-G:range=chr6_mann_hap4:1095951-10984885'pad=0,hg19_refFlat_HLA-G:range=chr6_mann_hap4:1095951-10984885'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10;hg19_refFlat_HLA-B:range=chr6_mcf_hap5:2702040-27047285'pad=0,hg19_refFlat_HLA-B:range=chr6_mcf_hap5:2702040-27047285'pad=0 3'pad=0 strand=- repeatMasking=none,-106.10;hg19_refFlat_HLA-E:range=chr6_mann_hap4:1805387-18084365'pad=0,hg19_refFlat_HLA-E:range=chr6_mann_hap4:1805387-18084365'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.40;hg19_refFlat_HLA-A:range=chr6_ssto_hap7:1239666-12425835'pad=0,hg19_refFlat_HLA-A:range=chr6_ssto_hap7:1239666-12425835'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.90;hg19_refFlat_HLA-E:range=chr6_qbl_hap6:1750224-17532735'pad=0,hg19_refFlat_HLA-E:range=chr6_qbl_hap6:1750224-17532735'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.40;hg19_refFlat_HLA-A:range=chr6_mcf_hap5:1150182-12951355'pad=0,hg19_refFlat_HLA-A:range=chr6_mcf_hap5:1150182-12951355'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70chr6:31321649-31324989"	NA	inner
CUST_36515_PI429285431	0.92142695	A	0.90162575	A	1.01381976817308	0	lncRNA	37715-1_{1..461}	n345016|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_565|NULL|-1.4604800|-0.1971882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345016|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_565|NULL|-1.4604800|-0.1971882	chr8	102138204	102138664	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33596_PI429285431	0.9069885	A	0.90005684	A	1.00481622147524	0	lncRNA	35161-1_{1..247}	n340352|AF009320|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2813|NULL|-1.0408200|-0.2083945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340352|AF009320|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2813|NULL|-1.0408200|-0.2083945	chr5	  9257232	  9257478	-	NA	NA	NA	NA	SEMA5A	NA	chr5:9247232-9267479	inner
CUST_29661_PI429285431	4.769397	P	5.1856103	P	0.749388996802449	0	lncRNA	31423-1_{1..233}	n333289|AY055827|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083954|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083954|1.0194100|-0.0764878	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333289|AY055827|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083954|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083954|1.0194100|-0.0764878	chr17	 74465174	 74465406	+	NA	NA	NA	NA	RHBDF2	NA	chr17:74466975-74475407	inner
CUST_44393_PI429285431	1.2830801	A	1.371801	A	0.940356103739796	0	lncRNA	49011-1_{1..3000}	"gi|334085192|ref|NR_038304.1| Homo sapiens uncharacterized LOC100505702 (LOC100505702), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|334085192|ref|NR_038304.1| Homo sapiens uncharacterized LOC100505702 (LOC100505702), transcript variant 2, non-coding RNA"	Chr4	 79567148	 79570147	+	100505702	NR_038304.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10"	NA	inter
CUST_50595_PI429285431	6.366931	P	6.3393817	P	1.0192792089681	0	lncRNA	54284-1_{1..1146}	hg19_lincRNAsTranscripts_TCONS_l2_00004214 range=chr10:81451256-81586183 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004214 range=chr10:81451256-81586183 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 81451256	 81452401	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36600_PI429285431	4.813228	P	5.0103674	P	0.872278418043423	0	lncRNA	37794-1_{1..863}	n345097|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_646|NULL|-1.2731700|-0.2669586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345097|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_646|NULL|-1.2731700|-0.2669586	chrX	109085563	109086425	+	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80"	NA	inter
CUST_3814_PI429285431	1.8138206	A	0.89261776	A	1.89369349322596	0	lncRNA	3782-1_{1..580}	"transcript_id ""ENST00000445161.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000445161.1"" | genecode_v17"	chr10	120116620	120117199	+	ENSG00000232139.1	ENST00000445161.1	LINC00867	LINC00867-001	NA	NA	NA	inter
CUST_45239_PI429285431	0.8999808	A	0.89179605	A	1.00568935966761	0	lncRNA	49694-1_{1..890}	"gi|341915434|ref|XR_108868.2| PREDICTED: Homo sapiens uncharacterized LOC100506538 (LOC100506538), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915434|ref|XR_108868.2| PREDICTED: Homo sapiens uncharacterized LOC100506538 (LOC100506538), misc_RNA"	Chr8	 95993135	 95994024	+	100506538	XR_108868.3	NA	NA	NA	NA	NA	inter
CUST_34370_PI429285431	3.8025255	P	3.463975	P	1.26448550565607	0	lncRNA	35857-1_{1..3000}	n341238|BX537586|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3706|NULL|-1.0441800|-0.3884714	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341238|BX537586|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3706|NULL|-1.0441800|-0.3884714	chr7	 43663963	 43666962	-	NA	NA	NA	NA	STK17A	"hg19_refFlat_STK17A:range=chr7:43622843-436644415'pad=0,hg19_refFlat_STK17A:range=chr7:43622843-436644415'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90chr7:43653963-43666978"	NA	inner
CUST_1516_PI429285431	0.912047	A	1.215874	A	0.810100610586943	0	lncRNA	1503-1_{1..791}	"transcript_id ""ENST00000471719.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000471719.1"" | genecode_v17"	chr3	156807670	156808460	+	ENSG00000241135.1	ENST00000471719.1	RP11-6F2.6	RP11-6F2.6-003	NA	NA	NA	inter
CUST_42191_PI429285431	1.1644006	A	1.3580393	A	0.874397571941046	0	lncRNA	44258-1_{1..61}	ENST00000411029 ncrna:miRNA chromosome:GRCh37:5:32379513:32379573:-1 gene:ENSG00000222961 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000411029 ncrna:miRNA chromosome:GRCh37:5:32379513:32379573:-1 gene:ENSG00000222961 gene_biotype:miRNA transcript_biotype:miRNA	chr5	 32379513	 32379573	-	ENSG00000222961	ENST00000411029	NA	NA	ZFR	NA	chr5:32369513-32389573	inner
CUST_34951_PI429285431	0.90529937	A	0.9013276	A	1.00275681422011	0	lncRNA	36368-1_{1..942}	n341869|BC043511|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4349|NULL|-0.4722250|-0.3227834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341869|BC043511|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4349|NULL|-0.4722250|-0.3227834	chr12	 27542721	 27543662	-	NA	NA	NA	NA	ARNTL2	"hg19_refFlat_ARNTL2:range=chr12:27486006-275734655'pad=0,hg19_refFlat_ARNTL2:range=chr12:27486006-275734655'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ARNTL2:range=chr12:27486006-275733975'pad=0,hg19_refFlat_ARNTL2:range=chr12:27486006-275733975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20chr12:27532721-27573466"	NA	inner
CUST_23468_PI429285431	2.3155756	A	3.022154	A	0.612771710588533	0	lncRNA	25035-1_{1..610}	lnc-CCDC23-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC23-1:3	chr1	 43311928	 43312537	-	lnc-CCDC23-1	lnc-CCDC23-1:3	ENSG00000228192.2	RP11-342M1.3	ERMAP	"hg19_refFlat_ERMAP:range=chr1:43296120-433089035'pad=0,hg19_refFlat_ERMAP:range=chr1:43296120-433089035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30chr1:43301928-43310660"	NA	inter
CUST_38026_PI429285431	2.473841	A	2.7204382	A	0.842882129078205	0	lncRNA	39111-1_{1..2776}	n377600|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029970||-0.1478190|-0.2553518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377600|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029970||-0.1478190|-0.2553518	chr6	   800531	   803306	+	NA	NA	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50"	NA	inter
CUST_6719_PI429285431	0.9322294	A	0.9000099	A	1.02258410065729	0	lncRNA	6667-1_{1..465}	"transcript_id ""ENST00000413070.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413070.1"" | genecode_v17"	chr20	 51290950	 51291414	+	ENSG00000232294.1	ENST00000413070.1	RP4-715N11.2	RP4-715N11.2-002	NA	NA	NA	inter
CUST_34050_PI429285431	10.802743	P	10.042578	P	1.69368431911274	0	lncRNA	35581-1_{1..1233}	n340869|AJ420500|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3334|NULL|-1.0493900|-0.3673414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340869|AJ420500|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3334|NULL|-1.0493900|-0.3673414	chr6	 21597660	 21598892	+	NA	NA	NA	NA	SOX4	NA	chr6:21593972-21598850	inner
CUST_4519_PI429285431	1.7317477	A	1.5220323	A	1.15646002689358	0	lncRNA	4467-1_{1..1713}	"transcript_id ""ENST00000535487.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535487.1"" | genecode_v17"	chr12	130554870	130556582	+	ENSG00000256906.1	ENST00000535487.1	RP11-474D1.2	RP11-474D1.2-001	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20"	NA	inter
LNCA_21_P0011127	0.91737336	A	0.90283984	A	1.01012478064142	0	lncRNA	TCONS_l2_00006745	NA	NA	NA	NA	XLOC_l2_003644	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003644), lincRNA [TCONS_l2_00006745]"	chr13:24545782-24545841	hs|13q12.12	Agilent_HUMAN_G3V2	TCONS_l2_00006745	TCONS_l2_00006745	chr13	 24545782	 24545841	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20095_PI429285431	1.3752754	A	1.3727775	A	1.00173291210211	0	lncRNA	21743-1_{1..2312}	lnc-C7orf10-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C7orf10-2:2	chr7	 41750196	 41752507	+	lnc-C7orf10-2	lnc-C7orf10-2:2	ENSG00000224116.2	INHBA-AS1	INHBA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10chr7:41740196-41742706"	NA	inter
CUST_17773_PI429285431	2.6709192	A	1.7978656	A	1.83153541803777	0	lncRNA	19504-1_{1..637}	lnc-DCT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCT-1:1	chr13	 95143174	 95143810	-	lnc-DCT-1	lnc-DCT-1:1	XLOC_010692	linc-DCT-1	NA	NA	NA	inter
CUST_39375_PI429285431	0.8997527	A	0.8932048	A	1.00454897373372	0	lncRNA	40338-1_{1..1068}	n386502|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mnh.1||0.9171570|-0.3366511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386502|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mnh.1||0.9171570|-0.3366511	chr9	 66513679	 66514746	-	NA	NA	NA	NA	LOC100132004	"hg19_refFlat_MYO5B:range=chr18:47352841-477211635'pad=0,hg19_refFlat_MYO5B:range=chr18:47352841-477211635'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10chr9:66544359-66563531"	NA	inter
CUST_22514_PI429285431	0.91064906	A	1.1052711	A	0.873801786192308	0	lncRNA	24101-1_{1..567}	lnc-FSIP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FSIP1-3:1	chr15	 40107519	 40108085	-	lnc-FSIP1-3	lnc-FSIP1-3:1	ENSG00000259432.1	RP11-37C7.2	GPR176	NA	chr15:40097519-40117630	inner
CUST_11150_PI429285431	8.298128	P	8.318441	P	0.986018759519433	0	lncRNA	12708-1_{1..1751}	lnc-IL17RA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL17RA-1:1	chr22	 17595620	 17597370	+	lnc-IL17RA-1	lnc-IL17RA-1:1	XLOC_014141	linc-CECR2-3	IL17RA	NA	chr22:17585620-17596584	inner
CUST_3522_PI429285431	1.5151708	A	0.91887134	A	1.51183370685246	0	lncRNA	3491-1_{1..1223}	"transcript_id ""ENST00000428292.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428292.1"" | genecode_v17"	chr9	116413236	116414458	+	ENSG00000227482.1	ENST00000428292.1	RP11-18B16.2	RP11-18B16.2-001	NA	NA	NA	inter
CUST_16087_PI429285431	1.1852671	A	0.905535	A	1.21396943646556	0	lncRNA	17790-1_{1..1174}	lnc-SERPINB3-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERPINB3-3:3	chr18	 62659870	 62661043	-	lnc-SERPINB3-3	lnc-SERPINB3-3:3	XLOC_012866	linc-SERPINB3-4	NA	NA	NA	inter
LNCA_21_P0004959	0.91580766	A	0.90192246	A	1.00967095155421	0	lncRNA	TCONS_00011998	NA	NA	NA	NA	XLOC_005512	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005512), lincRNA [TCONS_00011998]"	chr6:156203472-156203531	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_00011998	TCONS_00011998	chr6	156203472	156203531	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38267_PI429285431	1.0658221	A	0.9091227	A	1.11473392851984	0	lncRNA	39323-1_{1..644}	n381831|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001quy.2||-1.1323600|-0.3033635	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n381831|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001quy.2||-1.1323600|-0.3033635	chr12	  8932407	  8933050	+	NA	NA	NA	NA	RIMKLB	NA	chr12:8922407-8929787	inter
CUST_1404_PI429285431	5.661394	P	6.224284	P	0.676944752016665	0	lncRNA	1393-1_{1..465}	"transcript_id ""ENST00000484675.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000484675.1"" | genecode_v17"	chr3	 99226031	 99226495	-	ENSG00000243089.1	ENST00000484675.1	RP11-779P15.2	RP11-779P15.2-001	NA	NA	NA	inter
CUST_3715_PI429285431	5.2816133	P	5.2843637	P	0.998095384081818	0	lncRNA	3683-1_{1..402}	"transcript_id ""ENST00000595269.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595269.1"" | genecode_v17"	chr10	 67375394	 67375795	+	ENSG00000228065.5	ENST00000595269.1	RP11-222A11.1	RP11-222A11.1-015	NA	NA	NA	inter
CUST_43026_PI429285431	0.89887494	A	0.89708036	A	1.00124468204181	0	lncRNA	46423-1_{1..149}	ENST00000516309 ncrna:snRNA chromosome:GRCh37:10:12498482:12498630:1 gene:ENSG00000252118 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516309 ncrna:snRNA chromosome:GRCh37:10:12498482:12498630:1 gene:ENSG00000252118 gene_biotype:snRNA transcript_biotype:snRNA	chr10	 12498482	 12498630	+	ENSG00000252118	ENST00000516309	NA	NA	CAMK1D	NA	chr10:12488482-12508630	inner
LNCA_21_P0010096	0.9167836	A	0.903296	A	1.00939272930637	0	lncRNA	THC2688494	NA	NA	NA	NA	XLOC_013575	NA	NA	THC2688494	NA	"BROAD Institute lincRNA (XLOC_013575), lincRNA [TCONS_00028572]"	chr20:054678592-054678651	hs|20q13.2	Agilent_HUMAN_G3V2	THC2688494	THC2688494	chr20	 54678592	 54678651	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13744_PI429285431	3.0782752	P	3.1799297	P	0.931963591413823	0	lncRNA	15387-1_{1..522}	lnc-CES1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CES1-2:1	chr16	 55403854	 55404375	-	lnc-CES1-2	lnc-CES1-2:1	XLOC_011951	linc-IRX3-6	NA	NA	NA	inter
LNCA_21_P0007918	0.9174998	A	0.9041022	A	1.00932976207525	0	lncRNA	ENST00000422609	NA	NA	NA	NA	XLOC_010284	NA	ENST00000422609	THC2659192	NA	"BROAD Institute lincRNA (XLOC_010284), lincRNA [TCONS_00021522]"	chr13:19250244-19250303	hs|13q11	Agilent_HUMAN_G3V2	ENST00000422609	ENST00000422609	chr13	 19250244	 19250303	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5973_PI429285431	6.364525	P	6.486239	P	0.919095066912552	0	lncRNA	5901-1_{1..526}	"transcript_id ""ENST00000577560.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577560.1"" | genecode_v17"	chr17	 72602646	 72603171	+	ENSG00000261222.2	ENST00000577560.1	CTD-2006K23.1	CTD-2006K23.1-003	CD300E	NA	chr17:72606022-72613330	inter
LNCA_21_P0013261	0.9182842	A	0.9050076	A	1.00924511232158	0	lncRNA	ENST00000440208	NA	NA	NA	NA	XLOC_l2_013554	NA	ENST00000440208	THC2788696	NA	"BROAD Institute lincRNA (XLOC_l2_013554), lincRNA [TCONS_l2_00026154]"	chr7:108242017-108243633	hs|7q31.1	Agilent_HUMAN_G3V2	ENST00000440208	ENST00000440208	chr7	108242017	108243633	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39165_PI429285431	0.9128972	A	1.7372141	A	0.564749541711835	0	lncRNA	40142-1_{1..1599}	n385843|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004fed.1||-0.2656910|-0.3186831	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n385843|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004fed.1||-0.2656910|-0.3186831	chrX	149115588	149117186	+	NA	NA	NA	NA	CXorf40B	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20chrX:149105588-149106716"	NA	inter
CUST_154_PI429201921	0.9106453	A	0.90004873	A	1.00737202316752	0	lncRNA	133-1_{...	TC6_dbb_hap3000204.hg.1	TCONS_00029966-XLOC_014451 // Rinn lincRNAs // linc-C3orf58-2 chr6_dbb_hap3:-:130811-134864 // chr6_dbb_hap3 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6_dbb_hap3:-:130811-134864	NA	Affy_HUMAN_HTA2.0	TCONS_00029966-XLOC_014451	linc-C3orf58-2	chr6_dbb_hap3	   130811	   134864	-	NA	NA	NA	NA	C1orf174	NA	chr1:3806936-3816857	Unknown
LNCA_21_P0014678	1.8374811	A	2.406729	A	0.673968047189267	0	lncRNA	XR_110371	XR_110371	XR_110371	NA	NA	LOC100507065	uncharacterized LOC100507065	NA	THC2500596	NA	"PREDICTED: Homo sapiens hypothetical LOC100507065, transcript variant 3 (LOC100507065), miscRNA [XR_110371]"	chr12:65951738-65951679	hs|12q14.3	Agilent_HUMAN_G3V2	XR_110371	XR_110371	chr12	 65951679	 65951738	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46078_PI429285431	8.154637	P	8.106467	P	1.03395256489186	0	lncRNA	50349-1_{1..711}	"gi|333805635|ref|NR_038269.1| Homo sapiens uncharacterized LOC100506844 (LOC100506844), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|333805635|ref|NR_038269.1| Homo sapiens uncharacterized LOC100506844 (LOC100506844), non-coding RNA"	Chr12	 58325232	 58325942	-	100506844	NR_038269.1	NA	NA	NA	NA	NA	inter
CUST_40729_PI429285431	0.9158073	A	0.910238	A	1.00386780532012	0	lncRNA	41463-1_{1..1880}	n410319|NR_037181_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037181_8||-1.2199900|-0.3865292	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410319|NR_037181_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037181_8||-1.2199900|-0.3865292	chr6	   837719	   839598	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1897_PI429285431	2.3629441	A	2.837351	A	0.719762627632693	0	lncRNA	1888-1_{1..289}	"transcript_id ""ENST00000506412.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506412.1"" | genecode_v17"	chr4	136042423	136042711	-	ENSG00000248456.1	ENST00000506412.1	RP11-553P9.3	RP11-553P9.3-002	NA	NA	NA	inter
CUST_41254_PI429285431	8.753132	P	8.876562	P	0.918002507855618	0	lncRNA	42215-1_{1..98}	ENST00000385003 ncrna:miRNA chromosome:GRCh37:17:79099076:79099173:-1 gene:ENSG00000207736 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385003 ncrna:miRNA chromosome:GRCh37:17:79099076:79099173:-1 gene:ENSG00000207736 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 79099076	 79099173	-	ENSG00000207736	ENST00000385003	NA	NA	BAIAP2	NA	chr17:79089076-79091232	inner
CUST_2490_PI429285431	0.9058778	A	0.901741	A	1.00287152621235	0	lncRNA	2482-1_{1..212}	"transcript_id ""ENST00000424083.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424083.1"" | genecode_v17"	chr6	 19740408	 19740619	-	ENSG00000237404.1	ENST00000424083.1	RP3-471C18.2	RP3-471C18.2-001	NA	NA	NA	inter
CUST_28809_PI429285431	0.92048746	A	0.9057454	A	1.01027080363397	0	lncRNA	30517-1_{1..1148}	n326221|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091111|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091111|-0.2609330|-0.3663643	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326221|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091111|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091111|-0.2609330|-0.3663643	chr1	220206374	220207521	+	NA	NA	NA	NA	EPRS	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-15.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr1:220196374-220220000"	NA	inner
CUST_5469_PI429285431	2.2642322	A	1.753686	A	1.42458943878625	0	lncRNA	5402-1_{1..518}	"transcript_id ""ENST00000568036.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568036.1"" | genecode_v17"	chr16	 25431135	 25431652	-	ENSG00000261636.1	ENST00000568036.1	CTA-249B10.1	CTA-249B10.1-001	NA	NA	NA	inter
LNCA_32_P37495	0.923608	A	0.91099	A	1.00878449027897	0	lncRNA	ENST00000555001	XR_110229	XR_110229	NA	NA	NA	NA	ENST00000555001	THC2728054	NA	"PREDICTED: Homo sapiens hypothetical LOC100506700 (LOC100506700), miscRNA [XR_110229]"	chr14:81908468-81908409	hs|14q31.1	Agilent_HUMAN_G3V2	ENST00000555001	ENST00000555001	chr14	 81908409	 81908468	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20044_PI429285431	2.5978227	A	2.4340668	A	1.12019966348241	0	lncRNA	21695-1_{1..394}	lnc-EDN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EDN2-1:1	chr1	 41841197	 41841590	-	lnc-EDN2-1	lnc-EDN2-1:1	ENSG00000229901.1	RP11-399E6.4	FOXO6	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90chr1:41831197-41851341"	NA	inter
CUST_33267_PI429285431	0.9109477	A	0.9029869	A	1.0055332583116	0	lncRNA	34853-1_{1..3000}	n339975|AK096685|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2428|NULL|-0.2592410|-0.4021960	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339975|AK096685|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2428|NULL|-0.2592410|-0.4021960	chr10	 14566481	 14569480	-	NA	NA	NA	NA	FAM107B	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr10:14560559-14579859"	NA	inner
CUST_3895_PI429285431	0.91341394	A	1.0910887	A	0.88412682543295	0	lncRNA	3864-1_{1..781}	"transcript_id ""ENST00000511073.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511073.1"" | genecode_v17"	chr11	 28923828	 28924608	+	ENSG00000249867.1	ENST00000511073.1	RP11-115J23.1	RP11-115J23.1-002	NA	NA	NA	inter
CUST_20934_PI429285431	2.363504	A	2.6987386	A	0.792655230616921	0	lncRNA	22565-1_{1..561}	lnc-ARID3B-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARID3B-3:3	chr15	 74771401	 74771961	+	lnc-ARID3B-3	lnc-ARID3B-3:3	ENSG00000247240.3	RP11-10O17.2	NA	NA	NA	inter
CUST_24276_PI429285431	0.9284266	A	1.1036896	A	0.885606060430596	0	lncRNA	25827-1_{1..388}	lnc-HMHB1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-HMHB1-4:1	chr5	142573477	142573864	+	lnc-HMHB1-4	lnc-HMHB1-4:1	ENSG00000230789.1	ARHGAP26-IT1	ARHGAP26	NA	chr5:142563477-142583731	inner
CUST_28739_PI429285431	3.7986698	P	2.7380295	A	2.08585706582465	0	lncRNA	30440-1_{1..967}	n326134|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099211|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099211|-0.1620290|-0.2901411	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326134|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099211|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099211|-0.1620290|-0.2901411	chr1	246714168	246715134	-	NA	NA	NA	NA	TFB2M	NA	chr1:246704168-246725408	inner
CUST_23079_PI429285431	2.3314018	A	2.1375856	A	1.14378524516411	0	lncRNA	24650-1_{1..771}	lnc-AC006050.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC006050.2.1-2:1	chr17	 28884750	 28885520	-	lnc-AC006050.2.1-2	lnc-AC006050.2.1-2:1	ENSG00000266775.1	RP11-218M11.6	TBC1D29	"hg19_refFlat_USP6:range=chr17:5033663-50762735'pad=0,hg19_refFlat_USP6:range=chr17:5033663-50762735'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40chr17:28874750-28890511"	NA	inter
CUST_13123_PI429285431	3.3325949	P	3.142817	A	1.14058811110601	0	lncRNA	14749-1_{1..432}	lnc-ODF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ODF1-1:1	chr8	103541539	103541970	+	lnc-ODF1-1	lnc-ODF1-1:1	XLOC_006892	linc-ODF1-1	ODF1	NA	chr8:103531539-103551931	inter
CUST_44615_PI429285431	0.9286034	A	0.92939085	A	0.999454330184623	0	lncRNA	49185-3_{6001..8995}	"gi|400974228|ref|NR_073101.1| Homo sapiens janus kinase and microtubule interacting protein 2 (JAKMIP2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|400974228|ref|NR_073101.1| Homo sapiens janus kinase and microtubule interacting protein 2 (JAKMIP2), transcript variant 4, non-coding RNA"	Chr5	146971002	146973996	-	9832	NR_073101.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_23300_PI429285431	1.464436	A	1.0872576	A	1.29879919900633	0	lncRNA	24871-1_{1..1594}	lnc-CCNJ-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCNJ-1:7	chr10	 97963676	 97965269	+	lnc-CCNJ-1	lnc-CCNJ-1:7	ENSG00000177853.10	ZNF518A	BLNK	"hg19_refFlat_BLNK:range=chr10:97951729-980311555'pad=0,hg19_refFlat_BLNK:range=chr10:97951729-980311555'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70chr10:97953676-97975044"	NA	inter
LNCA_21_P0008395	0.9520884	A	0.921713	A	1.02127783523876	0	lncRNA	TCONS_00022639	NA	NA	NA	NA	XLOC_010940	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010940), lincRNA [TCONS_00022639]"	chr14:102097521-102097580	hs|14q32.31	Agilent_HUMAN_G3V2	TCONS_00022639	TCONS_00022639	chr14	102097521	102097580	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006827	2.6817951	A	2.9103878	A	0.853467013925948	0	lncRNA	TCONS_00018110	NA	NA	NA	NA	XLOC_008371	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008371), lincRNA [TCONS_00018110]"	chr10:6663852-6663911	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018110	TCONS_00018110	chr10	  6663852	  6663911	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25403_PI429285431	2.0070958	A	2.1490328	A	0.906301514024594	0	lncRNA	26934-1_{1..692}	lnc-FGF10-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FGF10-3:7	chr5	 44808744	 44809435	-	lnc-FGF10-3	lnc-FGF10-3:7	ENSG00000251141.1	RP11-53O19.1	MRPS30	NA	chr5:44809027-44815616	inter
CUST_25922_PI429285431	1.340236	A	0.92047256	A	1.33770819158987	0	lncRNA	27441-1_{1..610}	lnc-C8A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C8A-1:1	chr1	 57462308	 57462917	+	lnc-C8A-1	lnc-C8A-1:1	ENSG00000236341.1	RP5-1103B4.3	DAB1	NA	chr1:57463579-57472430	inter
CUST_14176_PI429285431	4.488154	P	4.048124	P	1.35663253753492	0	lncRNA	15829-1_{1..3000}	lnc-CA5A-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CA5A-4:3	chr16	 88218773	 88221772	-	lnc-CA5A-4	lnc-CA5A-4:3	XLOC_012057	linc-CA5A-2	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.70;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70"	NA	inter
CUST_12014_PI429285431	2.5942512	A	2.1409774	A	1.36914362957776	0	lncRNA	13596-1_{1..614}	lnc-RP11-168K9.2.1-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-168K9.2.1-2:10	chr11	126969169	126969782	+	lnc-RP11-168K9.2.1-2	lnc-RP11-168K9.2.1-2:10	XLOC_009323	linc-FLI1-4	NA	NA	NA	inter
CUST_20403_PI429285431	4.3380203	P	4.904616	P	0.675208185990769	0	lncRNA	22044-1_{1..547}	lnc-ENGASE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ENGASE-1:1	chr17	 77132100	 77132646	+	lnc-ENGASE-1	lnc-ENGASE-1:1	ENSG00000266711.1	RP11-398J5.1	RBFOX3	NA	chr17:77122100-77142484	inner
CUST_22619_PI429285431	3.9627926	P	4.065621	P	0.931205574611473	0	lncRNA	24205-1_{1..380}	lnc-GAS6-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-GAS6-5:1	chr13	114874116	114874495	-	lnc-GAS6-5	lnc-GAS6-5:1	ENSG00000232487.1	RASA3-IT1	RASA3	NA	chr13:114864116-114884295	inner
CUST_45087_PI429285431	2.5068793	A	3.3159232	A	0.570759985551519	0	lncRNA	49571-1_{1..2398}	"gi|213021164|ref|NR_024451.1| Homo sapiens uncharacterized LOC100134229 (LOC100134229), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|213021164|ref|NR_024451.1| Homo sapiens uncharacterized LOC100134229 (LOC100134229), non-coding RNA"	Chr7	139877061	139879458	+	100134229	NR_024451.1	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.60;hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20"	NA	inter
CUST_40628_PI429285431	2.5534296	A	2.915324	A	0.778142131628741	0	lncRNA	41369-1_{1..1121}	n410121|NR_036554|lncRNA|Homosapiens||RefGeneNoncode|NR_036554||3.9750100|-0.3146715	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410121|NR_036554|lncRNA|Homosapiens||RefGeneNoncode|NR_036554||3.9750100|-0.3146715	chr7	 29725687	 29726807	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45209_PI429285431	1.404885	A	0.92590106	A	1.39376172332405	0	lncRNA	49672-1_{1..1058}	"gi|336455130|ref|NR_038901.1| Homo sapiens long intergenic non-protein coding RNA 251 (LINC00251), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336455130|ref|NR_038901.1| Homo sapiens long intergenic non-protein coding RNA 251 (LINC00251), non-coding RNA"	Chr8	 66073380	 66074437	-	552859	NR_038901.1	NA	NA	NA	NA	NA	inter
CUST_29533_PI429285431	6.951039	P	7.0962343	P	0.904256958523839	0	lncRNA	31292-1_{1..773}	n332997|AF146693|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071356|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071356|-1.0254100|-0.2244024	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332997|AF146693|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071356|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071356|-1.0254100|-0.2244024	chr21	 35949773	 35950545	-	NA	NA	NA	NA	RCAN1	NA	chr21:35939773-35960546	inner
LNCA_21_P0013006	3.6393783	P	3.5673592	P	1.05118682577481	0	lncRNA	ENST00000514282	NA	NA	NA	NA	XLOC_l2_012238	NA	ENST00000514282	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012238), lincRNA [TCONS_l2_00023905]"	chr5:135712095-135712036	hs|5q31.1	Agilent_HUMAN_G3V2	ENST00000514282	ENST00000514282	chr5	135712036	135712095	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3130_PI429285431	0.9092795	A	0.8986893	A	1.00736757527976	0	lncRNA	3109-1_{1..433}	"transcript_id ""ENST00000531077.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531077.1"" | genecode_v17"	chr8	 60962146	 60962578	+	ENSG00000254775.1	ENST00000531077.1	RP11-27P7.1	RP11-27P7.1-001	NA	NA	NA	inter
CUST_35079_PI429285431	0.90938866	A	0.90686125	A	1.0017534025313	0	lncRNA	36488-1_{1..2597}	n342041|BC036479|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4522|NULL|-1.1193700|-0.3025993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342041|BC036479|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4522|NULL|-1.1193700|-0.3025993	chr6	 79787561	 79790157	+	NA	NA	NA	NA	PHIP	"hg19_refFlat_PHIP:range=chr6:79650410-797877855'pad=0,hg19_refFlat_PHIP:range=chr6:79650410-797877855'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30chr6:79777561-79788011"	NA	inner
CUST_3370_PI429285431	0.92615795	A	0.9129256	A	1.00921415746967	0	lncRNA	3345-1_{1..436}	"transcript_id ""ENST00000442260.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442260.1"" | genecode_v17"	chr9	 14025970	 14026405	+	ENSG00000235533.1	ENST00000442260.1	RP11-284P20.3	RP11-284P20.3-001	NA	NA	NA	inter
CUST_12894_PI429285431	6.193963	P	6.0709443	P	1.08901113084603	0	lncRNA	14522-1_{1..223}	lnc-PLS3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLS3-2:1	chrX	115005066	115005288	+	lnc-PLS3-2	lnc-PLS3-2:1	XLOC_008050	linc-AGTR2-1	NA	NA	NA	inter
CUST_44031_PI429285431	2.373983	A	1.003182	A	2.58614111646308	0	lncRNA	48715-1_{1..3000}	"gi|358030329|ref|NR_045563.1| Homo sapiens GULP, engulfment adaptor PTB domain containing 1 (GULP1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|358030329|ref|NR_045563.1| Homo sapiens GULP, engulfment adaptor PTB domain containing 1 (GULP1), transcript variant 5, non-coding RNA"	Chr2	189157390	189160389	+	51454	NR_045563.1	NA	NA	NA	NA	NA	inter
CUST_49710_PI429285431	0.9184034	A	0.92261976	A	0.997081708469149	0	lncRNA	53487-1_{1..2576}	hg19_lincRNAsTranscripts_TCONS_l2_00026420 range=chr7:22694074-22705809 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026420 range=chr7:22694074-22705809 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 22694074	 22696649	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8954_PI429285431	2.7318254	A	2.8512528	A	0.92055294197877	0	lncRNA	10488-1_{1..2555}	lnc-PABPC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PABPC4-1:1	chr1	 39995148	 39997702	-	lnc-PABPC4-1	lnc-PABPC4-1:1	ENSG00000246649	ENST00000499859	BMP8A	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50chr1:39985148-39995541"	NA	inner
CUST_4899_PI429285431	1.0952762	A	0.9283925	A	1.12263091976029	0	lncRNA	4841-1_{1..540}	"transcript_id ""ENST00000556271.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556271.1"" | genecode_v17"	chr14	 77177001	 77177540	-	ENSG00000258569.1	ENST00000556271.1	RP11-99E15.2	RP11-99E15.2-001	VASH1	NA	chr14:77167001-77237731	inter
CUST_27102_PI429285431	9.205137	P	9.557891	P	0.783087812469913	0	lncRNA	28634-2_{3001..3157}	n324212|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000140062|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000140062|-0.9719720|-0.1521182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324212|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000140062|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000140062|-0.9719720|-0.1521182	chr7	 27211173	 27211329	+	NA	NA	NA	NA	HOXA10	"hg19_refFlat_HOXA10:range=chr7:27211518-272139255'pad=0,hg19_refFlat_HOXA10:range=chr7:27211518-272139255'pad=0 3'pad=0 strand=- repeatMasking=none,-110.20chr7:27210210-27219880"	NA	inner
CUST_37942_PI429285431	1.8661156	A	1.9916604	A	0.916657823475351	0	lncRNA	39032-1_{1..1452}	n346489|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2039|NULL|-1.4433300|-0.2906308	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346489|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2039|NULL|-1.4433300|-0.2906308	chr4	188228508	188229959	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17018_PI429285431	0.9139002	A	0.9088664	A	1.00349525849703	0	lncRNA	18729-1_{1..1053}	lnc-MPEG1-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MPEG1-2:7	chr11	 58903530	 58904582	-	lnc-MPEG1-2	lnc-MPEG1-2:7	XLOC_009445	linc-GLYATL2	FAM111B	NA	chr11:58893530-58894888	inter
CUST_15916_PI429285431	1.0246191	A	1.4597074	A	0.739648483130495	0	lncRNA	17611-1_{1..227}	lnc-SLC39A11-1:27	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC39A11-1:27	chr17	 70335643	 70335869	-	lnc-SLC39A11-1	lnc-SLC39A11-1:27	XLOC_012567	linc-ABCA5-5	NA	NA	NA	inter
CUST_22637_PI429285431	3.5116882	P	3.4824617	P	1.02046485744748	0	lncRNA	24223-1_{1..1147}	lnc-MRPS25-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPS25-3:1	chr3	 14808482	 14809628	-	lnc-MRPS25-3	lnc-MRPS25-3:1	ENSG00000230172.1	AC090957.2	C3orf20	NA	chr3:14798482-14814543	inner
CUST_6208_PI429285431	1.5528464	A	0.91119856	A	1.5601100930018	0	lncRNA	6134-1_{1..454}	"transcript_id ""ENST00000590589.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590589.1"" | genecode_v17"	chr18	 53805843	 53806296	+	ENSG00000267732.1	ENST00000590589.1	RP11-456O19.3	RP11-456O19.3-001	NA	NA	NA	inter
CUST_1013_PI429285431	9.056802	P	9.483952	P	0.743729550091071	0	lncRNA	1002-1_{1..577}	"transcript_id ""ENST00000419650.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419650.1"" | genecode_v17"	chr2	108370601	108371177	+	ENSG00000232991.1	ENST00000419650.1	AC096655.1	AC096655.1-002	NA	NA	NA	inter
CUST_5928_PI429285431	1.6775959	A	1.6035657	A	1.05265318971524	0	lncRNA	5857-1_{1..552}	"transcript_id ""ENST00000584608.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584608.1"" | genecode_v17"	chr17	 61507829	 61508380	-	ENSG00000265282.1	ENST00000584608.1	RP11-269G24.4	RP11-269G24.4-001	TANC2	NA	chr17:61497829-61505067	inter
CUST_4623_PI429285431	0.99240047	A	1.0231366	A	0.978920679347723	0	lncRNA	4569-1_{1..411}	"transcript_id ""ENST00000417987.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417987.1"" | genecode_v17"	chr13	 48399465	 48399875	-	ENSG00000228573.1	ENST00000417987.1	RP11-279N8.1	RP11-279N8.1-001	NA	NA	NA	inter
CUST_12558_PI429285431	1.3873328	A	1.4058518	A	0.987245642464428	0	lncRNA	14168-1_{1..351}	lnc-SCGB1D4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCGB1D4-3:1	chr11	 61973712	 61974062	-	lnc-SCGB1D4-3	lnc-SCGB1D4-3:1	XLOC_009453	linc-FTH1-2	SCGB2A1	NA	chr11:61976140-61981411	inter
CUST_36284_PI429285431	0.9516274	A	1.7166378	A	0.588449126622823	0	lncRNA	37518-1_{1..2159}	n344812|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_361|NULL|-1.3055400|-0.2530465	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344812|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_361|NULL|-1.3055400|-0.2530465	chr17	 38676963	 38679121	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29398_PI429285431	5.262643	P	5.684218	P	0.746609101002776	0	lncRNA	31152-1_{1..235}	n332742|AF021799|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062574|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062574|1.2183200|-0.0597754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332742|AF021799|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062574|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062574|1.2183200|-0.0597754	chr22	 17583026	 17583260	+	NA	NA	NA	NA	IL17RA	NA	chr22:17573026-17594453	inner
CUST_15855_PI429285431	0.9122177	A	0.9153026	A	0.997863994775584	0	lncRNA	17546-4_{9001..12000}	lnc-KLF7-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF7-1:7	chr2	208111812	208114811	-	lnc-KLF7-1	lnc-KLF7-1:7	XLOC_002473	linc-KLF7-2	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60"	NA	inter
CUST_33985_PI429285431	0.9076737	A	0.90322775	A	1.00308645101929	0	lncRNA	35522-1_{1..2249}	n340798|BC037855|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3261|NULL|3.5613800|-0.2205284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340798|BC037855|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3261|NULL|3.5613800|-0.2205284	chr6	   961240	   963488	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36308_PI429285431	6.687076	P	6.824394	P	0.909207821393564	0	lncRNA	37539-2_{3001..3615}	n344834|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_383|NULL|-1.3305200|-0.3808684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344834|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_383|NULL|-1.3305200|-0.3808684	chr5	 87569340	 87569954	-	NA	NA	NA	NA	TMEM161B	NA	chr5:87556340-87564665	inter
CUST_36978_PI429285431	0.9007316	A	0.89799696	A	1.00189730561676	0	lncRNA	38124-1_{1..812}	n345440|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_989|NULL|-1.3316600|-0.4329948	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345440|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_989|NULL|-1.3316600|-0.4329948	chr1	 51448271	 51449082	-	NA	NA	NA	NA	CDKN2C	NA	chr1:51438271-51440309	inter
CUST_29878_PI429285431	5.4014044	P	5.5220013	P	0.919807011346671	0	lncRNA	31641-1_{1..475}	n333883|L36162|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193253|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193253|1.3690600|-0.2157162	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333883|L36162|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193253|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193253|1.3690600|-0.2157162	chr13	 28588622	 28589096	-	NA	NA	NA	NA	FLT3	NA	chr13:28578622-28607558	inner
LNCA_21_P0001645	5.2234473	P	5.497652	P	0.826906032714559	0	lncRNA	TCONS_00001886	NA	NA	NA	NA	XLOC_001265	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001265), lincRNA [TCONS_00001886]"	chr1:235098174-235098115	hs|1q42.3	Agilent_HUMAN_G3V2	TCONS_00001886	TCONS_00001886	chr1	235098115	235098174	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19877_PI429285431	0.9250911	A	0.91726965	A	1.00543613848472	0	lncRNA	21533-1_{1..1623}	lnc-STK32C-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STK32C-4:1	chr10	134334331	134335953	-	lnc-STK32C-4	lnc-STK32C-4:1	ENSG00000229081.1	RP11-432J24.6	NA	NA	NA	inter
CUST_45797_PI429285431	0.9216071	A	1.3424833	A	0.746970824583302	0	lncRNA	50137-1_{1..991}	"gi|310120675|ref|XR_109050.1| PREDICTED: Homo sapiens uncharacterized LOC100507417 (LOC100507417), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310120675|ref|XR_109050.1| PREDICTED: Homo sapiens uncharacterized LOC100507417 (LOC100507417), misc_RNA"	NA	NA	NA	NA	NA	XR_109050.1	NA	NA	NA	NA	NA	Unknown
CUST_26423_PI429285431	6.6251907	P	6.7250123	P	0.933148375157724	0	lncRNA	27930-1_{1..1791}	lnc-TTC31-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTC31-1:1	chr2	 74730767	 74732557	+	lnc-TTC31-1	lnc-TTC31-1:1	ENSG00000257702.1	RP11-523H20.2	TTC31	"hg19_refFlat_LBX2:range=chr2:74725054-747299865'pad=0,hg19_refFlat_LBX2:range=chr2:74725054-747299865'pad=0 3'pad=0 strand=- repeatMasking=none,-107.70chr2:74720767-74721691"	NA	inter
CUST_6825_PI429285431	1.4410073	A	1.4075099	A	1.02349027909585	0	lncRNA	6773-1_{1..763}	"transcript_id ""ENST00000409758.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000409758.1"" | genecode_v17"	chr21	 26541745	 26542507	-	ENSG00000222042.1	ENST00000409758.1	AP000233.4	AP000233.4-001	NA	NA	NA	inter
CUST_25552_PI429285431	1.4445634	A	1.8461396	A	0.757030745978542	0	lncRNA	27081-1_{1..551}	lnc-CTH-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTH-6:1	chr1	 71929014	 71929564	+	lnc-CTH-6	lnc-CTH-6:1	ENSG00000229956.2	ZRANB2-AS2	NEGR1	NA	chr1:71919014-71939184	inner
CUST_6640_PI429285431	0.9101679	A	0.89906365	A	1.00772657670019	0	lncRNA	6586-1_{1..446}	"transcript_id ""ENST00000458004.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458004.1"" | genecode_v17"	chr20	 10160883	 10161328	+	ENSG00000232448.1	ENST00000458004.1	RP11-416N4.1	RP11-416N4.1-001	NA	NA	NA	inter
CUST_27126_PI429285431	1.2269347	A	1.2239637	A	1.00206146217094	0	lncRNA	28661-1_{1..359}	n324241|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326000|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326000|-0.3788010|-0.1978084	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324241|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326000|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326000|-0.3788010|-0.1978084	chr7	 13860504	 13860862	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70"	NA	inter
CUST_20235_PI429285431	1.0731056	A	0.89917856	A	1.12812508445147	0	lncRNA	21878-1_{1..711}	lnc-TCTA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCTA-1:1	chr3	 49461734	 49462444	+	lnc-TCTA-1	lnc-TCTA-1:1	ENSG00000235261.1	NICN1-AS1	NICN1	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70chr3:49459766-49466757"	NA	inner
CUST_11457_PI429285431	0.8992589	A	1.2914816	A	0.761954787796182	0	lncRNA	13024-1_{1..475}	lnc-BIN1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BIN1-3:1	chr2	126483362	126483836	-	lnc-BIN1-3	lnc-BIN1-3:1	XLOC_002307	linc-MKI67IP-6	NA	NA	NA	inter
CUST_42424_PI429285431	2.4268894	A	2.644849	A	0.8597805624666	0	lncRNA	45141-1_{1..73}	ENST00000516599 ncrna:snoRNA chromosome:GRCh37:19:3521246:3521318:-1 gene:ENSG00000252408 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516599 ncrna:snoRNA chromosome:GRCh37:19:3521246:3521318:-1 gene:ENSG00000252408 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	  3521246	  3521318	-	ENSG00000252408	ENST00000516599	NA	NA	FZR1	NA	chr19:3511246-3531318	inner
LNCA_21_P0003165	0.9240549	A	0.9105252	A	1.00942218532635	0	lncRNA	TCONS_00006635	NA	NA	NA	NA	XLOC_003235	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003235), lincRNA [TCONS_00006635]"	chr3:126007248-126007189	hs|3q21.3	Agilent_HUMAN_G3V2	TCONS_00006635	TCONS_00006635	chr3	126007189	126007248	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6056_PI429285431	0.89889634	A	0.9125314	A	0.990593417913039	0	lncRNA	5982-1_{1..540}	"transcript_id ""ENST00000583985.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583985.1"" | genecode_v17"	chr18	  5081181	  5081720	+	ENSG00000265514.1	ENST00000583985.1	RP11-92G19.2	RP11-92G19.2-001	NA	NA	NA	inter
CUST_752_PI429285431	1.1216475	A	1.0665276	A	1.03894544474825	0	lncRNA	743-1_{1..1061}	"transcript_id ""ENST00000430897.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430897.1"" | genecode_v17"	chr2	 11497641	 11498701	-	ENSG00000230952.1	ENST00000430897.1	AC099344.2	AC099344.2-001	LOC650157	NA	chr2:11491753-11512199	inter
CUST_28132_PI429285431	1.4058518	A	0.9238112	A	1.39671783803421	0	lncRNA	29757-1_{1..740}	n325408|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323738|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323738|-0.6255460|-0.2341608	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325408|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323738|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323738|-0.6255460|-0.2341608	chr2	 16361072	 16361811	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48850_PI429285431	1.5797585	A	0.9367856	A	1.56154365245267	0	lncRNA	52686-1_{1..889}	hg19_lincRNAsTranscripts_TCONS_l2_00018861 range=chr3:130532579-130555401 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018861 range=chr3:130532579-130555401 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	130532579	130533467	+	NA	NA	NA	NA	ATP2C1	NA	chr3:130546482-130565401	inter
CUST_40550_PI429285431	4.249204	P	4.26373	P	0.989981863275734	0	lncRNA	41308-1_{1..1194}	n409696|NR_034097|lncRNA|Homosapiens||RefGeneNoncode|NR_034097||-0.7811890|-0.1823644	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n409696|NR_034097|lncRNA|Homosapiens||RefGeneNoncode|NR_034097||-0.7811890|-0.1823644	chr7	 28220075	 28221268	+	NA	NA	NA	NA	JAZF1	"hg19_refFlat_JAZF1:range=chr7:27872419-282201965'pad=0,hg19_refFlat_JAZF1:range=chr7:27872419-282201965'pad=0 3'pad=0 strand=- repeatMasking=none,-100.10chr7:28210075-28220437"	NA	inner
CUST_5525_PI429285431	0.9205189	A	0.91630304	A	1.00292648529457	0	lncRNA	5456-1_{1..854}	"transcript_id ""ENST00000564212.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564212.1"" | genecode_v17"	chr16	 48657358	 48658211	+	ENSG00000260086.1	ENST00000564212.1	RP11-42I10.1	RP11-42I10.1-002	NA	NA	NA	inter
CUST_3655_PI429285431	1.7232716	A	1.6422397	A	1.05777435222644	0	lncRNA	3624-1_{1..187}	"transcript_id ""ENST00000412439.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412439.1"" | genecode_v17"	chr10	 36378014	 36378200	-	ENSG00000227475.1	ENST00000412439.1	RP11-810B23.1	RP11-810B23.1-001	NA	NA	NA	inter
CUST_44900_PI429285431	5.3048964	P	5.414533	P	0.92682148926353	0	lncRNA	49420-1_{1..557}	"gi|410170511|ref|XR_171041.1| PREDICTED: Homo sapiens uncharacterized LOC644086 (LOC644086), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170511|ref|XR_171041.1| PREDICTED: Homo sapiens uncharacterized LOC644086 (LOC644086), misc_RNA"	Chr7	 29186136	 29186692	+	644086	XR_171041.2	NA	NA	NA	NA	NA	inter
CUST_12899_PI429285431	6.5060062	P	6.9783173	P	0.720808985098909	0	lncRNA	14528-1_{1..403}	lnc-AC069257.9.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC069257.9.1-2:3	chr3	195871048	195871450	+	lnc-AC069257.9.1-2	lnc-AC069257.9.1-2:3	XLOC_003002	linc-OSTalpha-1	NA	NA	NA	inter
CUST_5340_PI429285431	1.015749	A	0.9166801	A	1.07108197453237	0	lncRNA	5278-1_{1..561}	"transcript_id ""ENST00000561051.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561051.1"" | genecode_v17"	chr15	 96571318	 96571878	-	ENSG00000259348.1	ENST00000561051.1	RP11-4G2.1	RP11-4G2.1-001	NA	NA	NA	inter
LNCA_21_P0007182	2.5739558	A	2.045155	A	1.44272946835484	0	lncRNA	TCONS_00019246	NA	NA	NA	NA	XLOC_009078	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009078), lincRNA [TCONS_00019246]"	chr11:17089724-17089783	hs|11p15.1	Agilent_HUMAN_G3V2	TCONS_00019246	TCONS_00019246	chr11	 17089724	 17089783	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1272_PI429285431	0.9202765	A	0.9210281	A	0.999479166260097	0	lncRNA	1264-1_{1..2057}	"transcript_id ""ENST00000417947.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417947.1"" | genecode_v17"	chr2	238521620	238523676	+	ENSG00000227107.1	ENST00000417947.1	AC096574.5	AC096574.5-001	LRRFIP1	NA	chr2:238536224-238545168	inter
CUST_32954_PI429285431	0.896403	A	0.89313453	A	1.00226809901919	0	lncRNA	34574-1_{1..3000}	n339632|AK128163|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2076|NULL|-1.0383400|-0.3633076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339632|AK128163|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2076|NULL|-1.0383400|-0.3633076	chr3	143372168	143375167	+	NA	NA	NA	NA	SLC9A9	NA	chr3:143362168-143386642	inner
CUST_49833_PI429285431	0.92924154	A	1.1593813	A	0.852552297403029	0	lncRNA	53591-2_{3001..3386}	hg19_lincRNAsTranscripts_TCONS_l2_00025978 range=chr7:65227750-65231395 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025978 range=chr7:65227750-65231395 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 65230750	 65231135	+	NA	NA	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70"	NA	inter
CUST_2933_PI429285431	0.91292703	A	0.9117107	A	1.00084345121522	0	lncRNA	2914-1_{1..1517}	"transcript_id ""ENST00000604514.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604514.1"" | genecode_v17"	chr7	130474967	130476483	+	ENSG00000271522.1	ENST00000604514.1	RP11-36B6.1	RP11-36B6.1-001	NA	"hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.30"	NA	inter
CUST_49804_PI429285431	1.1412078	A	0.9035634	A	1.17906593657057	0	lncRNA	53560-1_{1..360}	hg19_lincRNAsTranscripts_TCONS_l2_00025924 range=chr7:63361212-63365075 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025924 range=chr7:63361212-63365075 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 63361212	 63361571	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17161_PI429285431	1.8298335	A	1.3109874	A	1.43280879683895	0	lncRNA	18870-1_{1..220}	lnc-MAGEA8-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAGEA8-2:10	chrX	149391702	149391921	+	lnc-MAGEA8-2	lnc-MAGEA8-2:10	XLOC_008083	linc-MAMLD1	NA	NA	NA	inter
CUST_31726_PI429285431	3.4357812	P	3.3804636	P	1.039087826598	0	lncRNA	33467-1_{1..448}	n338259|BC059953|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|652|NULL|-1.0751100|-0.1945415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338259|BC059953|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|652|NULL|-1.0751100|-0.1945415	chr19	   637104	   637551	-	NA	NA	NA	NA	RNF126	NA	chr19:647526-647537	inter
CUST_27303_PI429285431	0.90630877	A	0.90426296	A	1.00141905333814	0	lncRNA	28861-1_{1..442}	n324455|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041535|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041535|-1.3806400|-0.4178776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324455|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041535|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041535|-1.3806400|-0.4178776	chr6	 92156751	 92157192	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22513_PI429285431	0.91717654	A	0.9044439	A	1.00886465389332	0	lncRNA	24100-1_{1..497}	lnc-TMEM178-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM178-2:4	chr2	 40481560	 40482056	+	lnc-TMEM178-2	lnc-TMEM178-2:4	ENSG00000227028.1	AC007254.3	SLC8A1	NA	chr2:40471560-40491718	inner
CUST_3499_PI429285431	0.8896487	A	0.88422024	A	1.00376980966842	0	lncRNA	3470-1_{1..439}	"transcript_id ""ENST00000450399.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450399.1"" | genecode_v17"	chr9	101945655	101946093	+	ENSG00000227269.1	ENST00000450399.1	RP11-96L7.2	RP11-96L7.2-001	NA	NA	NA	inter
CUST_37741_PI429285431	0.8943598	A	0.889145	A	1.00362116454848	0	lncRNA	38835-1_{1..660}	n346243|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1793|NULL|-1.5516200|-0.2190553	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346243|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1793|NULL|-1.5516200|-0.2190553	chr21	 45621678	 45622337	-	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00"	NA	inter
CUST_17478_PI429285431	4.6047497	P	4.546075	P	1.04150856236949	0	lncRNA	19205-1_{1..258}	lnc-SUN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUN3-1:1	chr7	 48122478	 48122735	-	lnc-SUN3-1	lnc-SUN3-1:1	XLOC_006436	linc-SUN3-2	UPP1	NA	chr7:48128355-48132554	inter
CUST_16216_PI429285431	1.9528353	A	1.5104672	A	1.35883294311986	0	lncRNA	17922-1_{1..1096}	lnc-AKTIP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AKTIP-1:2	chr16	 53076477	 53077572	-	lnc-AKTIP-1	lnc-AKTIP-1:2	XLOC_011944	linc-TOX3-2	CHD9	NA	chr16:53066477-53086913	inter
CUST_50410_PI429285431	4.6253858	P	4.688148	P	0.957429258637015	0	lncRNA	54114-1_{1..594}	hg19_lincRNAsTranscripts_TCONS_l2_00030129 range=chrX:2536690-2556357 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030129 range=chrX:2536690-2556357 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	  2536690	  2537283	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44212_PI429285431	10.715919	P	11.631677	P	0.530065298252381	0	lncRNA	48865-1_{1..1719}	"gi|337756625|ref|NR_038993.1| Homo sapiens ZBTB20 antisense RNA 1 (ZBTB20-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|337756625|ref|NR_038993.1| Homo sapiens ZBTB20 antisense RNA 1 (ZBTB20-AS1), non-coding RNA"	Chr3	114070658	114072376	+	100131117	NR_038993.1	NA	NA	NA	"hg19_refFlat_ZBTB20:range=chr3:114057852-1140996345'pad=0,hg19_refFlat_ZBTB20:range=chr3:114057852-1140996345'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZBTB20:range=chr3:114057852-1140707055'pad=0,hg19_refFlat_ZBTB20:range=chr3:114057852-1140707055'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30"	NA	inter
CUST_45427_PI429285431	0.9167346	A	0.8982517	A	1.01289378720745	0	lncRNA	49847-2_{3001..6000}	"gi|283806708|ref|NR_033234.1| Homo sapiens spermatid perinuclear RNA binding protein (STRBP), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|283806708|ref|NR_033234.1| Homo sapiens spermatid perinuclear RNA binding protein (STRBP), transcript variant 3, non-coding RNA"	Chr9	125886899	125889898	-	55342	NR_033234.1	NA	NA	NA	NA	NA	inter
CUST_19561_PI429285431	2.5253305	A	2.609429	A	0.943373839850198	0	lncRNA	21217-1_{1..1230}	lnc-FASTK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FASTK-1:1	chr7	150773083	150774312	-	lnc-FASTK-1	lnc-FASTK-1:1	ENSG00000244151.1	RP11-148K1.12	SLC4A2	"hg19_refFlat_SLC4A2:range=chr7:150759075-1507734545'pad=0,hg19_refFlat_SLC4A2:range=chr7:150759075-1507734545'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.50;hg19_refFlat_SLC4A2:range=chr7:150759727-1507734545'pad=0,hg19_refFlat_SLC4A2:range=chr7:150759727-1507734545'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.50;hg19_refFlat_SLC4A2:range=chr7:150760268-1507734545'pad=0,hg19_refFlat_SLC4A2:range=chr7:150760268-1507734545'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.50chr7:150763083-150773614"	NA	inner
LNCA_21_P0014596	0.9162204	A	0.90264684	A	1.00945287367613	0	lncRNA	XR_110464	XR_110464	XR_110464	NA	Hs.437448	LOC100506291	uncharacterized LOC100506291	ENST00000432699	THC2497315	NA	"PREDICTED: Homo sapiens hypothetical LOC100506291, transcript variant 1 (LOC100506291), miscRNA [XR_110464]"	chr10:126402213-126402272	hs|10q26.13	Agilent_HUMAN_G3V2	XR_110464	XR_110464	chr10	126402213	126402272	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28951_PI429285431	0.90227896	A	0.90271395	A	0.999698533358131	0	lncRNA	30672-1_{1..398}	n326381|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039132|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039132|-1.1947900|-0.3052560	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326381|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039132|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039132|-1.1947900|-0.3052560	chr1	147857375	147857772	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15534_PI429285431	6.8035154	P	7.173053	P	0.774030542519935	0	lncRNA	17219-1_{1..1264}	lnc-SBDS-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SBDS-2:2	chr7	 66800199	 66801462	-	lnc-SBDS-2	lnc-SBDS-2:2	XLOC_006486	linc-SBDS-5	NA	NA	NA	inter
CUST_30325_PI429285431	9.685547	P	9.6761055	P	1.00656581014851	0	lncRNA	32101-1_{1..462}	n335239|AY545552|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255366|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255366|1.8712100|-0.0602002	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335239|AY545552|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255366|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255366|1.8712100|-0.0602002	chr3	  9730351	  9730812	+	NA	NA	NA	NA	MTMR14	NA	chr3:9720351-9744078	inner
LNCA_21_P0002247	2.138279	A	0.90444005	A	2.35191993792126	0	lncRNA	TCONS_00003749	NA	NA	NA	NA	XLOC_001546	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001546), lincRNA [TCONS_00003749]"	chr2:82077595-82077654	hs|2p12	Agilent_HUMAN_G3V2	TCONS_00003749	TCONS_00003749	chr2	 82077595	 82077654	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8329_PI429285431	0.92734534	A	0.92869675	A	0.999063712559591	0	lncRNA	9911-1_{1..2104}	lnc-ZNF814-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF814-2:1	chr19	 58368385	 58370488	-	lnc-ZNF814-2	lnc-ZNF814-2:1	ENSG00000250014	ENST00000514177	ZNF587	NA	chr19:58361181-58376491	inner
CUST_19232_PI429285431	0.925403	A	0.9124503	A	1.00901855175974	0	lncRNA	20902-1_{1..600}	lnc-DHRS7-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHRS7-1:6	chr14	 60711886	 60712485	-	lnc-DHRS7-1	lnc-DHRS7-1:6	ENSG00000254718.2	CTD-2184C24.2	PPM1A	NA	chr14:60712470-60722054	inter
CUST_14113_PI429285431	5.8600225	P	5.9324203	P	0.951056001747921	0	lncRNA	15760-1_{1..1145}	lnc-BCL3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BCL3-1:2	chr19	 45248302	 45249446	+	lnc-BCL3-1	lnc-BCL3-1:2	XLOC_013095	linc-BCL3	BCL3	NA	chr19:45251978-45259208	inter
CUST_35027_PI429285431	4.3317394	P	1.1378541	A	9.15072023801585	0	lncRNA	36440-1_{1..2366}	n341969|BC017481|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4450|NULL|11.1118000|-0.2356742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341969|BC017481|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4450|NULL|11.1118000|-0.2356742	chr12	 77421731	 77424096	-	NA	NA	NA	NA	E2F7	NA	chr12:77415026-77459360	inner
CUST_36441_PI429285431	1.3915108	A	0.90148985	A	1.40446527043885	0	lncRNA	37655-1_{1..1469}	n344955|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_504|NULL|-1.3150800|-0.2504298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344955|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_504|NULL|-1.3150800|-0.2504298	chr7	 55532612	 55534080	-	NA	NA	NA	NA	VOPP1	NA	chr7:55538306-55544260	inter
CUST_51500_PI429285431	8.001783	P	8.160574	P	0.895775429672252	0	lncRNA	55076-1_{1..1252}	hg19_lincRNAsTranscripts_TCONS_l2_00010423 range=chr16:75259972-75262093 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010423 range=chr16:75259972-75262093 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 75259972	 75261223	+	NA	NA	NA	NA	BCAR1	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00chr16:75262928-75272093"	NA	inter
CUST_31008_PI429285431	1.8326935	A	2.825	A	0.502673486067892	0	lncRNA	32796-1_{1..580}	n337206|BC101210|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386337|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386337|1.8142800|-0.1151231	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337206|BC101210|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386337|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386337|1.8142800|-0.1151231	chr19	 13988060	 13988639	+	NA	NA	NA	NA	C19orf57	NA	chr19:13993168-14001317	inner
CUST_28430_PI429285431	0.91195905	A	0.9026353	A	1.00648365953171	0	lncRNA	30089-1_{1..444}	n325754|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044628|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044628|-1.3649400|-0.4180595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325754|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044628|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044628|-1.3649400|-0.4180595	chr13	 39816093	 39816536	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18125_PI429285431	1.245065	A	1.9240757	A	0.624593430403134	0	lncRNA	19860-1_{1..973}	lnc-C8orf45-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C8orf45-1:1	chr8	 67838508	 67839480	+	lnc-C8orf45-1	lnc-C8orf45-1:1	XLOC_006829	linc-CSPP1	C8orf45	NA	chr8:67828508-67834283	inter
CUST_46015_PI429285431	5.8338194	P	4.569838	P	2.40157589236343	0	lncRNA	50299-1_{1..3000}	"gi|332205984|ref|NR_038177.1| Homo sapiens caprin family member 2 (CAPRIN2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|332205984|ref|NR_038177.1| Homo sapiens caprin family member 2 (CAPRIN2), transcript variant 5, non-coding RNA"	Chr12	 30862486	 30865485	-	65981	NR_038177.1	NA	NA	NA	NA	NA	inter
CUST_20004_PI429285431	1.1658313	A	1.1188927	A	1.0330704200598	0	lncRNA	21657-1_{1..536}	lnc-HSPA4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSPA4-2:1	chr5	132582225	132582760	+	lnc-HSPA4-2	lnc-HSPA4-2:1	ENSG00000249478.1	CTB-49A3.5	FSTL4	NA	chr5:132572225-132592623	inner
LNCA_21_P0006904	1.0395621	A	0.913247	A	1.09150224676696	0	lncRNA	TCONS_00018320	NA	NA	NA	NA	XLOC_008599	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008599), lincRNA [TCONS_00018320]"	chr10:106345282-106345341	hs|10q25.1	Agilent_HUMAN_G3V2	TCONS_00018320	TCONS_00018320	chr10	106345282	106345341	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39360_PI429285431	1.010028	A	1.085397	A	0.949099337522801	0	lncRNA	40324-1_{1..723}	n386455|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lkv.1||-0.2298920|-0.2075906	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386455|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lkv.1||-0.2298920|-0.2075906	chr7	123634981	123635703	+	NA	NA	NA	NA	TMEM229A	NA	chr7:123670970-123673523	inter
CUST_41993_PI429285431	3.0139668	A	3.1727939	P	0.895753015310579	0	lncRNA	43824-1_{1..77}	ENST00000517008 ncrna:miRNA chromosome:GRCh37:1:154226921:154226997:1 gene:ENSG00000252817 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517008 ncrna:miRNA chromosome:GRCh37:1:154226921:154226997:1 gene:ENSG00000252817 gene_biotype:miRNA transcript_biotype:miRNA	chr1	154226921	154226997	+	ENSG00000252817	ENST00000517008	NA	NA	UBAP2L	NA	chr1:154216921-154236997	inner
CUST_1554_PI429285431	2.2983265	A	2.8317587	A	0.690909090947917	0	lncRNA	1541-1_{1..263}	"transcript_id ""ENST00000473110.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000473110.1"" | genecode_v17"	chr3	170458140	170458402	-	ENSG00000239739.1	ENST00000473110.1	RP11-373E16.4	RP11-373E16.4-001	NA	NA	NA	inter
CUST_34989_PI429285431	0.91092575	A	0.9038437	A	1.00492097139383	0	lncRNA	36403-2_{3001..3171}	n341915|BC034605|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4396|NULL|-1.0831300|-0.2466054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341915|BC034605|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4396|NULL|-1.0831300|-0.2466054	chr12	 50308735	 50308905	+	NA	NA	NA	NA	FAIM2	NA	chr12:50295735-50297760	inter
CUST_14826_PI429285431	1.09755	A	1.0393585	A	1.04115978965254	0	lncRNA	16489-1_{1..514}	lnc-NAPB-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAPB-1:5	chr20	 23338592	 23339105	-	lnc-NAPB-1	lnc-NAPB-1:5	XLOC_013693	linc-CD93-1	GZF1	NA	chr20:23345021-23348642	inter
LNCA_21_P0003057	3.0134766	A	3.6725705	P	0.633275907795021	0	lncRNA	TCONS_00006304	NA	NA	NA	NA	XLOC_002908	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002908), lincRNA [TCONS_00006304]"	chr3:167595500-167596232	hs|3q26.1	Agilent_HUMAN_G3V2	TCONS_00006304	TCONS_00006304	chr3	167595500	167596232	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009922	3.6676006	P	3.7089481	P	0.971746896431363	0	lncRNA	ENST00000420710	NA	NA	NA	NA	XLOC_013828	NA	ENST00000420710	NA	NA	"BROAD Institute lincRNA (XLOC_013828), lincRNA [TCONS_00028080]"	chr20:59652341-59652282	hs|20q13.33	Agilent_HUMAN_G3V2	ENST00000420710	ENST00000420710	chr20	 59652282	 59652341	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3907_PI429285431	0.9287067	A	0.92262346	A	1.00422548293888	0	lncRNA	3876-1_{1..389}	"transcript_id ""ENST00000527984.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527984.1"" | genecode_v17"	chr11	 34554561	 34554949	-	ENSG00000255271.1	ENST00000527984.1	RP4-594L9.2	RP4-594L9.2-001	NA	NA	NA	inter
CUST_42601_PI429285431	4.9007435	P	4.8959303	P	1.00334182750581	0	lncRNA	45457-1_{1..130}	ENST00000364790 ncrna:snoRNA chromosome:GRCh37:X:5328163:5328292:1 gene:ENSG00000201660 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364790 ncrna:snoRNA chromosome:GRCh37:X:5328163:5328292:1 gene:ENSG00000201660 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	  5328163	  5328292	+	ENSG00000201660	ENST00000364790	NA	NA	NA	NA	NA	inter
CUST_19964_PI429285431	0.9872556	A	0.9891201	A	0.998708461836083	0	lncRNA	21618-1_{1..668}	lnc-PKN3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PKN3-2:1	chr9	131449817	131450484	+	lnc-PKN3-2	lnc-PKN3-2:1	ENSG00000226602.1	RP11-216B9.8	SET	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30chr9:131445934-131458675"	NA	inner
CUST_9615_PI429285431	0.9239081	A	0.922414	A	1.00103616765364	0	lncRNA	11131-1_{1..528}	lnc-MME-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MME-1:7	chr3	154976047	154976574	+	lnc-MME-1	lnc-MME-1:7	XLOC_002886	linc-GMPS-3	NA	NA	NA	inter
CUST_4478_PI429285431	2.8749642	A	3.1121287	P	0.848411158050059	0	lncRNA	4427-1_{1..654}	"transcript_id ""ENST00000537478.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537478.1"" | genecode_v17"	chr12	127148225	127148878	-	ENSG00000256732.1	ENST00000537478.1	RP11-407A16.3	RP11-407A16.3-002	NA	NA	NA	inter
CUST_12287_PI429285431	6.8371162	P	7.3365545	P	0.707382140286924	0	lncRNA	13897-1_{1..492}	lnc-GPR39-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR39-2:1	chr2	133095945	133096436	+	lnc-GPR39-2	lnc-GPR39-2:1	XLOC_001680	linc-GPR39-1	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_51985_PI429285431	0.92062277	A	0.9253564	A	0.996724274645435	0	lncRNA	55522-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00017148 range=chr21:16190134-16254319 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017148 range=chr21:16190134-16254319 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 16193134	 16196133	-	NA	NA	NA	NA	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-13.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00"	NA	inter
CUST_49331_PI429285431	0.9209637	A	0.9255675	A	0.996813975193183	0	lncRNA	53144-3_{6001..7071}	hg19_lincRNAsTranscripts_TCONS_l2_00022345 range=chr5:67088978-67107273 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022345 range=chr5:67088978-67107273 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 67094978	 67096048	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4385_PI429285431	0.906735	A	1.1464689	A	0.846901505946168	0	lncRNA	4336-1_{1..420}	"transcript_id ""ENST00000549532.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549532.1"" | genecode_v17"	chr12	 94885322	 94885741	-	ENSG00000257400.1	ENST00000549532.1	RP11-778J16.3	RP11-778J16.3-001	NA	NA	NA	inter
CUST_2062_PI429285431	1.8981016	A	1.8879122	A	1.00708775394958	0	lncRNA	2053-2_{3001..3255}	"transcript_id ""ENST00000564741.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564741.1"" | genecode_v17"	chr5	  6022142	  6022396	-	ENSG00000261037.1	ENST00000564741.1	CTC-471C19.1	CTC-471C19.1-001	NA	NA	NA	inter
CUST_42245_PI429285431	5.920776	P	6.378008	P	0.728382416247931	0	lncRNA	44381-1_{1..70}	ENST00000387421 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:8295:8364:1 gene:ENSG00000210156 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000387421 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:8295:8364:1 gene:ENSG00000210156 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	chrMT	     8295	     8364	+	ENSG00000210156	ENST00000387421	NA	NA	NA	NA	NA	Unknown
CUST_52109_PI429285431	4.432617	P	4.6295185	P	0.872422268365421	0	lncRNA	55634-1_{1..586}	hg19_lincRNAsTranscripts_TCONS_l2_00017871 range=chr22:18762596-18774230 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017871 range=chr22:18762596-18774230 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 18762596	 18763181	-	NA	NA	NA	NA	LOC100132900	NA	chr22:18781949-18784230	inter
CUST_12198_PI429285431	0.9073974	A	0.9015877	A	1.00403509634239	0	lncRNA	13797-2_{3001..4708}	lnc-MANEA-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MANEA-3:1	chr6	 94488886	 94490593	+	lnc-MANEA-3	lnc-MANEA-3:1	XLOC_005392	linc-MANEA-3	NA	NA	NA	inter
CUST_20051_PI429285431	0.90750086	A	0.90069926	A	1.00472564065012	0	lncRNA	21702-1_{1..563}	lnc-AL353997.5.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL353997.5.1-1:2	chr17	 18325495	 18326057	+	lnc-AL353997.5.1-1	lnc-AL353997.5.1-1:2	ENSG00000205266.5	AL353997.3	LGALS9C	NA	chr17:18330120-18335631	inter
LNCA_21_P0009891	2.3410096	A	2.3027673	A	1.02686199226011	0	lncRNA	XR_133258	XR_133258	XR_133258	NA	NA	LOC100505683	uncharacterized LOC100505683	ENST00000452395	THC2721497	NA	"PREDICTED: Homo sapiens hypothetical LOC100505683 (LOC100505683), miscRNA [XR_133258]"	chr20:23337715-23337656	hs|20p11.21	Agilent_HUMAN_G3V2	XR_133258	XR_133258	chr20	 23337656	 23337715	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22722_PI429285431	0.90732205	A	0.9023688	A	1.00343923190493	0	lncRNA	24306-1_{1..728}	lnc-LRMP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRMP-2:1	chr12	 25112988	 25113715	+	lnc-LRMP-2	lnc-LRMP-2:1	ENSG00000255921.1	RP11-662I13.2	C12orf77	NA	chr12:25120061-25123092	inter
CUST_456_PI429285431	7.1156855	P	7.1222696	P	0.995446647733009	0	lncRNA	448-1_{1..473}	"transcript_id ""ENST00000413826.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413826.1"" | genecode_v17"	chr1	153653277	153653749	+	ENSG00000244484.1	ENST00000413826.1	RP11-354A16.2	RP11-354A16.2-003	NPR1	NA	chr1:153651164-153664268	inner
CUST_21830_PI429285431	3.432003	P	3.4603105	P	0.980569980323363	0	lncRNA	23440-1_{1..1101}	lnc-RP11-257K9.7.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-RP11-257K9.7.1-1:1	chr6	 73853149	 73854249	-	lnc-RP11-257K9.7.1-1	lnc-RP11-257K9.7.1-1:1	ENSG00000229154.1	KCNQ5-AS1	KCNQ5	NA	chr6:73843149-73863237	inner
CUST_7101_PI429285431	2.3277562	A	2.529461	A	0.869522461007502	0	lncRNA	7036-1_{1..654}	"transcript_id ""ENST00000455395.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455395.1"" | genecode_v17"	chrX	 73500296	 73500949	-	ENSG00000230590.3	ENST00000455395.1	FTX	FTX-004	NA	NA	NA	inter
CUST_36776_PI429285431	7.324709	P	6.509563	P	1.7594762009268	0	lncRNA	37948-1_{1..1796}	n345255|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_804|NULL|-1.3165900|-0.2995496	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345255|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_804|NULL|-1.3165900|-0.2995496	chr14	 50104308	 50106103	+	NA	NA	NA	NA	POLE2	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90chr14:50110270-50118957"	NA	inter
CUST_26851_PI429285431	0.9139632	A	0.9098526	A	1.00285331377336	0	lncRNA	28364-1_{1..1340}	n323922|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055623|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055623|-0.2895600|-0.3408290	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323922|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055623|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055623|-0.2895600|-0.3408290	chrX	  2541028	  2542367	-	NA	NA	NA	NA	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.05;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
CUST_44410_PI429285431	0.89266837	A	0.8969528	A	0.997034664742772	0	lncRNA	49024-2_{3001..3773}	"gi|224028263|ref|NR_026968.1| Homo sapiens RPL34 antisense RNA 1 (head to head) (RPL34-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224028263|ref|NR_026968.1| Homo sapiens RPL34 antisense RNA 1 (head to head) (RPL34-AS1), non-coding RNA"	Chr4	109462346	109463118	-	285456	NR_026968.1	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40"	NA	inter
LNCA_21_P0005862	1.425138	A	0.9190955	A	1.42014919375463	0	lncRNA	TCONS_00015456	NA	NA	NA	NA	XLOC_007131	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007131), lincRNA [TCONS_00015456]"	chr8:81220297-81220238	hs|8q21.13	Agilent_HUMAN_G3V2	TCONS_00015456	TCONS_00015456	chr8	 81220238	 81220297	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13625_PI429285431	0.9006624	A	0.91005933	A	0.993507711035314	0	lncRNA	15265-1_{1..368}	lnc-PPID-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPID-1:1	chr4	159689769	159690136	-	lnc-PPID-1	lnc-PPID-1:1	XLOC_004139	linc-PPID	FNIP2	NA	chr4:159690182-159699811	inter
CUST_41918_PI429285431	7.1747484	P	5.0107155	P	4.48165905779467	0	lncRNA	43663-1_{1..91}	ENST00000584665 ncrna:miRNA chromosome:GRCh37:6:116778895:116778985:-1 gene:ENSG00000265516 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584665 ncrna:miRNA chromosome:GRCh37:6:116778895:116778985:-1 gene:ENSG00000265516 gene_biotype:miRNA transcript_biotype:miRNA	chr6	116778895	116778985	-	ENSG00000265516	ENST00000584665	NA	NA	FAM26F	NA	chr6:116774180-116784934	inter
CUST_7487_PI429285431	4.4684644	P	4.8567758	P	0.764023331179156	0	lncRNA	9127-1_{1..494}	lnc-DYRK2-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DYRK2-4:3	chr12	 68628309	 68628802	+	lnc-DYRK2-4	lnc-DYRK2-4:3	ENSG00000255733	GS1-410F4.2	IL26	NA	chr12:68618309-68619571	inter
CUST_33726_PI429285431	3.1668131	P	3.837263	P	0.628310719945961	0	lncRNA	35284-1_{1..499}	n340503|AF086004|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2965|NULL|-1.4311500|-0.3922735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340503|AF086004|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2965|NULL|-1.4311500|-0.3922735	chr17	 10034210	 10034708	-	NA	NA	NA	NA	GAS7	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90chr17:10024210-10044704"	NA	inner
CUST_18086_PI429285431	2.5700958	A	2.6337738	P	0.956821690540257	0	lncRNA	19821-1_{1..336}	lnc-FGD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGD3-1:1	chr9	 95559359	 95559694	+	lnc-FGD3-1	lnc-FGD3-1:1	XLOC_007463	linc-FGD3-1	NA	NA	NA	inter
LNCA_19_P00331618	6.4787517	P	6.349027	P	1.09408490431779	0	lncRNA	XR_110916	XR_110916	XR_110916	NA	NA	LOC100507645	NA	NA	THC2560712	NA	"PREDICTED: Homo sapiens hypothetical LOC100507645, transcript variant 2 (LOC100507645), miscRNA [XR_110916]"	chr11:65266876-65266817	hs|11q13.1	Agilent_HUMAN_G3V2	XR_110916	XR_110916	chr11	 65266817	 65266876	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008987	3.6398084	P	4.401022	P	0.589999812048737	0	lncRNA	TCONS_00024494	NA	NA	NA	NA	XLOC_011814	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011814), lincRNA [TCONS_00024494]"	chr16:86338019-86338078	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024494	TCONS_00024494	chr16	 86338019	 86338078	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50262_PI429285431	3.5021708	P	4.1591816	P	0.634190952098323	0	lncRNA	53985-1_{1..752}	hg19_lincRNAsTranscripts_TCONS_l2_00028787 range=chr9:68810281-68811704 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028787 range=chr9:68810281-68811704 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 68810281	 68811032	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38257_PI429285431	5.0741234	P	6.1603756	P	0.470983296355937	0	lncRNA	39315-1_{1..2363}	n381793|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pyz.2||1.0360100|-0.2309206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381793|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pyz.2||1.0360100|-0.2309206	chr11	123496110	123498472	+	NA	NA	NA	NA	GRAMD1B	NA	chr11:123486110-123493518	inter
CUST_49777_PI429285431	6.8393893	P	7.0323195	P	0.874827089480299	0	lncRNA	53537-1_{1..827}	hg19_lincRNAsTranscripts_TCONS_l2_00026592 range=chr7:56718266-56730711 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026592 range=chr7:56718266-56730711 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 56718266	 56719092	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004989	8.351866	P	8.430552	P	0.946919704193272	0	lncRNA	TCONS_00012046	NA	NA	NA	NA	XLOC_005578	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005578), lincRNA [TCONS_00012046]"	chr6:2273117-2272911	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_00012046	TCONS_00012046	chr6	  2272911	  2273117	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3697_PI429285431	0.97182786	A	0.92139274	A	1.03557720911183	0	lncRNA	3665-1_{1..436}	"transcript_id ""ENST00000427182.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427182.1"" | genecode_v17"	chr10	 57265979	 57266414	+	ENSG00000228048.1	ENST00000427182.1	RP11-598C10.1	RP11-598C10.1-001	NA	NA	NA	inter
CUST_6900_PI429285431	0.9083051	A	1.4765861	A	0.674419894674438	0	lncRNA	6850-1_{1..734}	"transcript_id ""ENST00000422199.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000422199.1"" | genecode_v17"	chr21	 46419122	 46419855	-	ENSG00000224930.2	ENST00000422199.1	LINC00162	LINC00162-001	NA	NA	NA	inter
CUST_21368_PI429285431	2.621923	A	1.5654917	A	2.07978053691978	0	lncRNA	22991-1_{1..3000}	lnc-STOM-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STOM-2:1	chr9	124043046	124046045	-	lnc-STOM-2	lnc-STOM-2:1	ENSG00000235865.2	GSN-AS1	LOC100128064	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_GSN:range=chr9:124044730-1240948815'pad=0,hg19_refFlat_GSN:range=chr9:124044730-1240948815'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40chr9:124042136-124049119"	NA	inner
CUST_31137_PI429285431	8.882761	P	9.544993	P	0.631899925136381	0	lncRNA	32932-1_{1..251}	n337464|EF036488|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394741|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394741|1.1536700|-0.0203700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337464|EF036488|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394741|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394741|1.1536700|-0.0203700	chr17	 79670530	 79670780	+	NA	NA	NA	NA	HGS	NA	chr17:79660530-79669151	inner
CUST_46019_PI429285431	3.723701	P	3.5238445	P	1.14858410353599	0	lncRNA	50301-2_{3001..4297}	"gi|300244515|ref|NR_034000.1| Homo sapiens YY1 associated factor 2 (YAF2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300244515|ref|NR_034000.1| Homo sapiens YY1 associated factor 2 (YAF2), transcript variant 5, non-coding RNA"	Chr12	 42553906	 42555202	-	10138	NR_034000.1	NA	NA	NA	NA	NA	inter
CUST_17722_PI429285431	0.9057118	A	0.91803014	A	0.991497926163028	0	lncRNA	19452-1_{1..289}	lnc-CCDC125-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC125-6:3	chr5	 67829366	 67829654	-	lnc-CCDC125-6	lnc-CCDC125-6:3	XLOC_004859	linc-CD180-7	NA	NA	NA	inter
CUST_29534_PI429285431	5.1564274	P	6.6020985	P	0.367121344364169	0	lncRNA	31293-1_{1..393}	n333000|AF147314|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071387|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071387|-1.1132300|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333000|AF147314|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071387|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071387|-1.1132300|-1.0000000	chr3	194407048	194407440	+	NA	NA	NA	NA	FAM43A	NA	chr3:194406622-194409766	inner
CUST_32275_PI429285431	0.91501117	A	1.1359661	A	0.857997333969789	0	lncRNA	33962-1_{1..3000}	n338852|BC036673|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1275|NULL|-1.1478600|-0.4162130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338852|BC036673|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1275|NULL|-1.1478600|-0.4162130	chr2	 58236366	 58239365	-	NA	NA	NA	NA	NA	"hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-22.90"	NA	inter
CUST_13533_PI429285431	2.959278	A	4.0126915	P	0.481826784638892	0	lncRNA	15173-1_{1..750}	lnc-SRP9-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRP9-1:5	chr1	225903748	225904497	+	lnc-SRP9-1	lnc-SRP9-1:5	XLOC_000587	linc-SRP9-1	NA	NA	NA	inter
CUST_28767_PI429285431	1.9517387	A	1.8367165	A	1.08299171033055	0	lncRNA	30474-2_{3001..3574}	n326172|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092806|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092806|-0.3579010|-0.3380227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326172|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092806|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092806|-0.3579010|-0.3380227	chr1	232930770	232931343	+	NA	NA	NA	NA	KIAA1383	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40chr1:232940638-232944013"	NA	inter
CUST_3519_PI429285431	2.3414216	A	1.1994561	A	2.2068147066179	0	lncRNA	3490-1_{1..3000}	"transcript_id ""ENST00000439875.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000439875.1"" | genecode_v17"	chr9	115865618	115868617	-	ENSG00000225684.3	ENST00000439875.1	FAM225B	FAM225B-002	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-30.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.62;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90"	NA	inter
CUST_14766_PI429285431	1.5466646	A	1.3099827	A	1.17827958016419	0	lncRNA	16427-1_{1..686}	lnc-HNRNPA2B1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-HNRNPA2B1-4:2	chr7	 25872530	 25873215	-	lnc-HNRNPA2B1-4	lnc-HNRNPA2B1-4:2	XLOC_006383	linc-NPVF-3	NA	NA	NA	inter
CUST_5630_PI429285431	1.1456463	A	0.9057421	A	1.18091424198715	0	lncRNA	5558-1_{1..720}	"transcript_id ""ENST00000568751.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568751.1"" | genecode_v17"	chr16	 79804368	 79805087	+	ENSG00000260876.1	ENST00000568751.1	RP11-345M22.1	RP11-345M22.1-003	NA	NA	NA	inter
CUST_20151_PI429285431	2.358871	A	0.9170818	A	2.71657560649633	0	lncRNA	21796-1_{1..660}	lnc-KLHL25-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL25-5:1	chr15	 86213916	 86214575	-	lnc-KLHL25-5	lnc-KLHL25-5:1	ENSG00000259367.1	RP11-815J21.4	AKAP13	NA	chr15:86203916-86224179	inner
CUST_40820_PI429285431	0.907527	A	0.90390074	A	1.00251669346462	0	lncRNA	41523-2_{3001..3558}	n410587|NR_037850|lncRNA|Homosapiens||RefGeneNoncode|NR_037850||-1.1374300|-0.2660481	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n410587|NR_037850|lncRNA|Homosapiens||RefGeneNoncode|NR_037850||-1.1374300|-0.2660481	chr1	213994094	213994651	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_762_PI429285431	2.667758	A	2.5873535	A	1.05731444675301	0	lncRNA	753-1_{1..478}	"transcript_id ""ENST00000449986.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449986.1"" | genecode_v17"	chr2	 12246710	 12247187	+	ENSG00000224184.1	ENST00000449986.1	AC096559.1	AC096559.1-004	NA	NA	NA	inter
CUST_1870_PI429285431	0.9033675	A	0.9097583	A	0.995580031936079	0	lncRNA	1860-1_{1..477}	"transcript_id ""ENST00000439565.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439565.1"" | genecode_v17"	chr4	124666078	124666554	-	ENSG00000226655.1	ENST00000439565.1	AC096732.2	AC096732.2-001	NA	NA	NA	inter
CUST_37459_PI429285431	8.18447	P	8.295768	P	0.925754780850529	0	lncRNA	38558-1_{1..336}	n345910|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1459|NULL|-1.3149600|-0.1660025	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345910|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1459|NULL|-1.3149600|-0.1660025	chr15	102513192	102513527	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8705_PI429285431	2.9595973	A	3.3499644	P	0.762935447551164	0	lncRNA	10251-1_{1..3000}	lnc-TOP3A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TOP3A-1:1	chr17	 18260512	 18263511	-	lnc-TOP3A-1	lnc-TOP3A-1:1	ENSG00000249596	ENST00000503497	SHMT1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MYO15A:range=chr17:18022115-180821845'pad=0,hg19_refFlat_MYO15A:range=chr17:18022115-180821845'pad=0 3'pad=0 strand=+ repeatMasking=none,-112.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60chr17:18250512-18266856"	NA	inner
CUST_38234_PI429285431	6.0937223	P	3.9141488	P	4.53019609368924	0	lncRNA	39296-1_{1..3000}	n381720|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001nxj.1||0.2624210|-0.3810727	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381720|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001nxj.1||0.2624210|-0.3810727	chr11	 63391555	 63394554	-	NA	NA	NA	NA	ATL3	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90chr11:63396437-63405325"	NA	inter
CUST_31643_PI429285431	0.9183855	A	0.9015001	A	1.01177282799721	0	lncRNA	33394-1_{1..700}	n338164|BC035864|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|553|NULL|-1.1180100|-0.2005129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338164|BC035864|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|553|NULL|-1.1180100|-0.2005129	chr22	 44839206	 44839905	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13835_PI429285431	2.7329051	A	3.0716026	A	0.790754902355758	0	lncRNA	15478-1_{1..240}	lnc-MNAT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MNAT1-2:1	chr14	 61122573	 61122812	+	lnc-MNAT1-2	lnc-MNAT1-2:1	XLOC_010851	linc-MNAT1	SIX1	NA	chr14:61112573-61116155	inter
CUST_3140_PI429285431	0.9287036	A	0.9259384	A	1.0019185286092	0	lncRNA	3119-1_{1..472}	"transcript_id ""ENST00000519452.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519452.1"" | genecode_v17"	chr8	 62737996	 62738467	+	ENSG00000254119.1	ENST00000519452.1	RP11-705O24.1	RP11-705O24.1-007	NA	NA	NA	inter
CUST_8268_PI429285431	3.3449275	P	3.431619	P	0.94167980796736	0	lncRNA	9854-2_{3001..6000}	lnc-TIMP3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMP3-2:1	chr22	 33219342	 33222341	+	lnc-TIMP3-2	lnc-TIMP3-2:1	ENSG00000251658	ENST00000514117	SYN3	"hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60chr22:33206342-33226563"	NA	inner
LNCA_19_P00805433	4.2634897	P	4.164027	P	1.07137437843016	0	lncRNA	ENST00000457217	NA	BC031108	NA	NA	XLOC_000470	NA	ENST00000457217	THC2487317	NA	"BROAD Institute lincRNA (XLOC_000470), lincRNA [TCONS_00000338]"	chr1:175848632-175848691	hs|1q25.1	Agilent_HUMAN_G3V2	ENST00000457217	ENST00000457217	chr1	175848632	175848691	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27587_PI429285431	2.549581	A	2.8654308	A	0.803377632616198	0	lncRNA	29165-1_{1..292}	n324789|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141403|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141403|-1.1643500|-0.1945663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324789|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141403|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141403|-1.1643500|-0.1945663	chr21	 39322330	 39322621	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41844_PI429285431	6.705829	P	7.132426	P	0.744014683999507	0	lncRNA	43479-1_{1..73}	ENST00000579887 ncrna:miRNA chromosome:GRCh37:1:5624131:5624203:1 gene:ENSG00000264341 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579887 ncrna:miRNA chromosome:GRCh37:1:5624131:5624203:1 gene:ENSG00000264341 gene_biotype:miRNA transcript_biotype:miRNA	chr1	  5624131	  5624203	+	ENSG00000264341	ENST00000579887	NA	NA	NA	NA	NA	inter
CUST_23390_PI429285431	0.91764504	A	0.90863097	A	1.0062676371564	0	lncRNA	24958-1_{1..451}	lnc-PDE4D-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDE4D-2:1	chr5	 58159139	 58159589	-	lnc-PDE4D-2	lnc-PDE4D-2:1	ENSG00000248733.1	CTD-2176I21.2	NA	NA	NA	inter
CUST_44907_PI429285431	3.4734352	P	1.5856961	A	3.70054843668839	0	lncRNA	49424-2_{3001..5178}	"gi|381342473|ref|NR_046478.1| Homo sapiens FK506 binding protein 14, 22 kDa (FKBP14), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|381342473|ref|NR_046478.1| Homo sapiens FK506 binding protein 14, 22 kDa (FKBP14), transcript variant 2, non-coding RNA"	Chr7	 30053199	 30055376	-	55033	NR_046478.1	NA	NA	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.81;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0,hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40"	NA	inter
CUST_12319_PI429285431	0.9120088	A	0.9011796	A	1.0075344718083	0	lncRNA	13932-1_{1..432}	lnc-RDH14-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RDH14-2:1	chr2	 18606259	 18606690	-	lnc-RDH14-2	lnc-RDH14-2:1	XLOC_002003	linc-SMC6	NA	NA	NA	inter
CUST_28672_PI429285431	0.9233118	A	1.4291624	A	0.704245038612212	0	lncRNA	30364-1_{1..548}	n326051|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047086|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047086|-1.1428400|-0.3233979	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326051|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047086|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047086|-1.1428400|-0.3233979	chr10	 19075367	 19075914	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70"	NA	inter
CUST_8922_PI429285431	0.8992714	A	0.8980617	A	1.00083885178385	0	lncRNA	10457-1_{1..2719}	lnc-SEMA4B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEMA4B-2:1	chr15	 90621052	 90623770	+	lnc-SEMA4B-2	lnc-SEMA4B-2:1	ENSG00000246921	ENST00000500531	ZNF710	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00chr15:90611052-90625432"	NA	inner
LNCA_21_P0011137	2.5311856	A	2.1197608	A	1.32999866720604	0	lncRNA	TCONS_l2_00006779	NA	NA	NA	NA	XLOC_l2_003674	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003674), lincRNA [TCONS_l2_00006779]"	chr13:32520296-32520355	hs|13q13.1	Agilent_HUMAN_G3V2	TCONS_l2_00006779	TCONS_l2_00006779	chr13	 32520296	 32520355	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23009_PI429285431	8.585279	P	7.0596194	P	2.87918322137133	0	lncRNA	24581-2_{3001..3709}	lnc-DNASE1L3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DNASE1L3-1:1	chr3	 58159224	 58159932	-	lnc-DNASE1L3-1	lnc-DNASE1L3-1:1	ENSG00000244161.1	FLNB-AS1	FLNB	"hg19_refFlat_FLNB:range=chr3:57994292-581564895'pad=0,hg19_refFlat_FLNB:range=chr3:57994292-581564895'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10chr3:58146224-58157982"	NA	inner
CUST_51421_PI429285431	4.3859754	P	4.758486	P	0.772437119585045	0	lncRNA	55000-1_{1..310}	hg19_lincRNAsTranscripts_TCONS_l2_00009998 range=chr16:11477510-11477921 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009998 range=chr16:11477510-11477921 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 11477510	 11477819	-	NA	NA	NA	NA	LOC388210	NA	chr16:11467510-11484311	inter
LNCA_21_P0006910	5.8781185	P	5.9837294	P	0.929411305996582	0	lncRNA	TCONS_00018331	NA	NA	NA	NA	XLOC_008609	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008609), lincRNA [TCONS_00018331]"	chr10:110734897-110759905	hs|10q25.1	Agilent_HUMAN_G3V2	TCONS_00018331	TCONS_00018331	chr10	110734897	110759905	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12474_PI429285431	6.786873	P	6.8069725	P	0.986164688199225	0	lncRNA	14086-1_{1..596}	lnc-ACTR3C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACTR3C-2:1	chr7	149918021	149918616	-	lnc-ACTR3C-2	lnc-ACTR3C-2:1	XLOC_006644	linc-ZNF467-2	NA	NA	NA	inter
LNCA_21_P0006188	0.9164966	A	0.9021572	A	1.00998887372732	0	lncRNA	TCONS_00016089	NA	NA	NA	NA	XLOC_007478	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007478), lincRNA [TCONS_00016089]"	chr9:98894414-98894473	hs|9q22.32	Agilent_HUMAN_G3V2	TCONS_00016089	TCONS_00016089	chr9	 98894414	 98894473	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25915_PI429285431	5.8644166	P	5.4484386	P	1.33420282394628	0	lncRNA	27434-1_{1..444}	lnc-TM9SF2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TM9SF2-2:1	chr13	 99970900	 99971343	+	lnc-TM9SF2-2	lnc-TM9SF2-2:1	ENSG00000203341.3	UBAC2-IT1	UBAC2	"hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-26.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70chr13:99960900-99981209"	NA	inter
CUST_40479_PI429285431	2.1946032	A	2.1583226	A	1.02546666878566	0	lncRNA	41246-1_{1..3000}	n409415|NR_033815|lncRNA|Homosapiens||RefGeneNoncode|NR_033815||9.5968700|-0.1350098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409415|NR_033815|lncRNA|Homosapiens||RefGeneNoncode|NR_033815||9.5968700|-0.1350098	chr3	 46710484	 46713483	-	NA	NA	NA	NA	ALS2CL	NA	chr3:46710485-46735194	inner
LNCA_21_P0009463	0.9157962	A	0.9016198	A	1.00987476861015	0	lncRNA	TCONS_00026293	NA	NA	NA	NA	XLOC_012637	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012637), lincRNA [TCONS_00026293]"	chr18:19495233-19495292	hs|18q11.2	Agilent_HUMAN_G3V2	TCONS_00026293	TCONS_00026293	chr18	 19495233	 19495292	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9586_PI429285431	1.4188632	A	0.9096198	A	1.42330356940506	0	lncRNA	11102-1_{1..2110}	lnc-TUBGCP3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TUBGCP3-1:3	chr13	113343094	113345203	-	lnc-TUBGCP3-1	lnc-TUBGCP3-1:3	XLOC_010734	linc-TUBGCP3-2	ATP11A	NA	chr13:113344643-113353757	inter
CUST_18179_PI429285431	4.8076735	P	5.32341	P	0.699435777649193	0	lncRNA	19915-1_{1..476}	lnc-CENPP-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CENPP-3:6	chr9	 94910204	 94910679	+	lnc-CENPP-3	lnc-CENPP-3:6	ENSG00000225511	C9orf44	NA	NA	NA	inter
CUST_45690_PI429285431	7.379031	P	7.82733	P	0.732906467249894	0	lncRNA	50062-1_{1..2686}	"gi|300796527|ref|NR_034125.1| Homo sapiens uncharacterized LOC387723 (LOC387723), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300796527|ref|NR_034125.1| Homo sapiens uncharacterized LOC387723 (LOC387723), non-coding RNA"	Chr10	131862160	131864845	-	387723	NR_034125.1	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10"	NA	inter
CUST_32927_PI429285431	1.2300867	A	2.2048376	A	0.508827694164234	0	lncRNA	34549-2_{3001..3674}	n339597|AK126952|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2041|NULL|-1.0170800|-0.2367368	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339597|AK126952|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2041|NULL|-1.0170800|-0.2367368	chr20	 21482898	 21483571	-	NA	NA	NA	NA	NKX2-2	NA	chr20:21469898-21493572	inter
CUST_28160_PI429285431	1.1213272	A	0.90928876	A	1.15832366882838	0	lncRNA	29787-1_{1..490}	n325439|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324046|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324046|-1.3319700|-0.3502945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325439|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324046|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324046|-1.3319700|-0.3502945	chr2	 11456578	 11457067	+	NA	NA	NA	NA	ROCK2	"hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.20;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00chr2:11446578-11469685"	NA	inner
CUST_13438_PI429285431	0.92218256	A	0.92190987	A	1.000189032169	0	lncRNA	15077-1_{1..240}	lnc-WRN-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRN-5:2	chr8	 31249416	 31249655	+	lnc-WRN-5	lnc-WRN-5:2	XLOC_006765	linc-NRG1-2	NA	NA	NA	inter
CUST_26120_PI429285431	0.919201	A	0.9185158	A	1.00047505725209	0	lncRNA	27631-1_{1..412}	lnc-RAB9A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAB9A-1:1	chrX	 13785766	 13786177	+	lnc-RAB9A-1	lnc-RAB9A-1:1	ENSG00000225374.1	GS1-526D21.5	GPM6B	NA	chrX:13789062-13795984	inner
LNCA_21_P0001665	5.0185733	P	4.8592443	P	1.11676760668678	0	lncRNA	TCONS_00001938	NA	NA	NA	NA	XLOC_000048	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000048), lincRNA [TCONS_00001938]"	chr1:10519717-10519776	hs|1p36.22	Agilent_HUMAN_G3V2	TCONS_00001938	TCONS_00001938	chr1	 10519717	 10519776	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17224_PI429285431	1.0964192	A	0.900815	A	1.14520367093745	0	lncRNA	18940-1_{1..254}	lnc-NUAK1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUAK1-4:1	chr12	106148962	106149215	-	lnc-NUAK1-4	lnc-NUAK1-4:1	XLOC_010184	linc-APPL2-2	NA	NA	NA	inter
CUST_25822_PI429285431	0.89852446	A	0.89243066	A	1.004232833529	0	lncRNA	27343-1_{1..433}	lnc-TULP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TULP2-1:1	chr19	 49421961	 49422393	-	lnc-TULP2-1	lnc-TULP2-1:1	ENSG00000235191.1	NUCB1-AS1	NUCB1	"hg19_refFlat_NUCB1:range=chr19:49404054-494256815'pad=0,hg19_refFlat_NUCB1:range=chr19:49404054-494256815'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00chr19:49411961-49426540"	NA	inner
CUST_24000_PI429285431	0.9235775	A	0.9086193	A	1.0104221705432	0	lncRNA	25554-1_{1..552}	lnc-LIN54-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIN54-1:5	chr4	 83821525	 83822076	-	lnc-LIN54-1	lnc-LIN54-1:5	ENSG00000251022.1	RP11-163O17.1	SEC31A	NA	chr4:83811525-83812419	inter
CUST_36723_PI429285431	3.6545856	P	3.493678	P	1.11799024497577	0	lncRNA	37900-1_{1..1950}	n345207|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_756|NULL|-1.3674400|-0.2334172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345207|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_756|NULL|-1.3674400|-0.2334172	chr13	 20179731	 20181680	+	NA	NA	NA	NA	MPHOSPH8	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00chr13:20207788-20209044"	NA	inter
CUST_37332_PI429285431	0.90582776	A	0.8971142	A	1.00605805579143	0	lncRNA	38437-1_{1..250}	n345774|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1323|NULL|-1.3809100|-0.2033470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345774|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1323|NULL|-1.3809100|-0.2033470	chr7	 17619971	 17620220	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44000_PI429285431	0.91213584	A	0.9029362	A	1.00639707899278	0	lncRNA	48694-2_{3001..6000}	"gi|365733617|ref|NR_045684.1| Homo sapiens myosin IIIB (MYO3B), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|365733617|ref|NR_045684.1| Homo sapiens myosin IIIB (MYO3B), transcript variant 5, non-coding RNA"	Chr2	171037655	171040654	+	140469	NR_045684.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10"	NA	inter
CUST_44222_PI429285431	4.3444004	P	4.8137474	P	0.722291451031354	0	lncRNA	48872-2_{3001..6000}	"gi|292781202|ref|NR_033437.1| Homo sapiens uridine monophosphate synthetase (UMPS), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|292781202|ref|NR_033437.1| Homo sapiens uridine monophosphate synthetase (UMPS), transcript variant 3, non-coding RNA"	Chr3	124452213	124455212	+	7372	NR_033437.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
CUST_39324_PI429285431	6.328501	P	6.9240594	P	0.66178825823403	0	lncRNA	40290-1_{1..1337}	n386373|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010iti.1||0.2433080|-0.2667882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386373|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010iti.1||0.2433080|-0.2667882	chr5	  1628869	  1630205	-	NA	NA	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40"	NA	inter
CUST_39853_PI429285431	4.9387035	P	4.10483	P	1.78246469287905	0	lncRNA	40752-1_{1..3000}	n406488|NR_023921|lncRNA|Homosapiens||RefGeneNoncode|NR_023921||-0.3880240|-0.2871044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n406488|NR_023921|lncRNA|Homosapiens||RefGeneNoncode|NR_023921||-0.3880240|-0.2871044	chr14	 24407939	 24410938	-	NA	NA	NA	NA	DHRS4	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DHRS4L2:range=chr14:24458157-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24458157-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.70;hg19_refFlat_DHRS4L1:range=chr14:24505710-245201775'pad=0,hg19_refFlat_DHRS4L1:range=chr14:24505710-245201775'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DHRS4:range=chr14:24422998-244380805'pad=0,hg19_refFlat_DHRS4:range=chr14:24422998-244380805'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.03chr14:24422965-24433392"	NA	inner
CUST_7939_PI429285431	0.9189108	A	1.1025612	A	0.880472347519176	0	lncRNA	9551-1_{1..646}	lnc-WDR74-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-WDR74-1:11	chr11	 62622896	 62623541	-	lnc-WDR74-1	lnc-WDR74-1:11	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62632960	inter
CUST_39730_PI429285431	1.2389269	A	1.3574681	A	0.921118581010616	0	lncRNA	40659-1_{1..3000}	n405703|NR_002940|lncRNA|Homosapiens||RefGeneNoncode|NR_002940||0.4433670|-0.2578985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405703|NR_002940|lncRNA|Homosapiens||RefGeneNoncode|NR_002940||0.4433670|-0.2578985	chr17	  1481376	  1484375	+	NA	NA	NA	NA	SLC43A2	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_SLC43A2:range=chr17:1478898-15311685'pad=0,hg19_refFlat_SLC43A2:range=chr17:1478898-15311685'pad=0 3'pad=0 strand=- repeatMasking=none,-93.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90chr17:1477696-1499848"	NA	inner
CUST_36494_PI429285431	9.461703	P	9.645928	P	0.880121740730817	0	lncRNA	37695-1_{1..3000}	n344995|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_544|NULL|-1.3125200|-0.2492554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344995|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_544|NULL|-1.3125200|-0.2492554	chr8	 28913454	 28916453	+	NA	NA	NA	NA	HMBOX1	NA	chr8:28903454-28910242	inter
CUST_29472_PI429285431	0.90551424	A	0.8976829	A	1.00544303099991	0	lncRNA	31230-1_{1..622}	n332889|AF086048|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066927|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066927|-0.6945830|-0.0927609	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332889|AF086048|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066927|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066927|-0.6945830|-0.0927609	chr22	 44882172	 44882793	-	NA	NA	NA	NA	LDOC1L	NA	chr22:44888450-44892794	inter
LNCA_21_P0006844	0.9256199	A	0.9133936	A	1.00851063666682	0	lncRNA	TCONS_00018142	NA	NA	NA	NA	XLOC_008418	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008418), lincRNA [TCONS_00018142]"	chr10:26190413-26194330	hs|10p12.1	Agilent_HUMAN_G3V2	TCONS_00018142	TCONS_00018142	chr10	 26190413	 26194330	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46793_PI429285431	4.770646	P	4.7259965	P	1.03143256429123	0	lncRNA	50939-1_{1..3000}	"gi|239735497|ref|NR_015341.2| Homo sapiens leucine rich repeat containing 37B pseudogene 1 (LRRC37BP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|239735497|ref|NR_015341.2| Homo sapiens leucine rich repeat containing 37B pseudogene 1 (LRRC37BP1), non-coding RNA"	Chr17	 28903483	 28906482	+	147172	NR_015341.2	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90"	NA	inter
CUST_45918_PI429285431	0.9166588	A	0.90716654	A	1.00660122593488	0	lncRNA	50228-1_{1..830}	"gi|310120797|ref|XR_110533.1| PREDICTED: Homo sapiens IGYY565 (LOC100130428), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120797|ref|XR_110533.1| PREDICTED: Homo sapiens IGYY565 (LOC100130428), misc_RNA"	NA	NA	NA	NA	NA	XR_110533.1	NA	NA	NA	NA	NA	Unknown
CUST_33694_PI429285431	4.007457	P	4.3153486	P	0.807821472736052	0	lncRNA	35255-1_{1..1012}	n340470|M32443|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2931|NULL|-1.3290600|-0.3016705	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340470|M32443|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2931|NULL|-1.3290600|-0.3016705	chr5	 55286237	 55287248	-	NA	NA	NA	NA	IL6ST	NA	chr5:55276237-55290821	inner
CUST_18683_PI429285431	0.9074289	A	0.8959508	A	1.00798774582253	0	lncRNA	20383-2_{3001..3290}	lnc-MFSD6L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MFSD6L-1:1	chr17	  8773846	  8774135	-	lnc-MFSD6L-1	lnc-MFSD6L-1:1	ENSG00000174083	PIK3R6	PIK3R6	NA	chr17:8760846-8770994	inner
CUST_25381_PI429285431	9.156264	P	9.255511	P	0.933520105726049	0	lncRNA	26912-1_{1..603}	lnc-AL358813.2-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL358813.2-2:12	chr1	149616546	149617148	+	lnc-AL358813.2-2	lnc-AL358813.2-2:12	ENSG00000232151.3	RP11-277L2.2	NA	NA	NA	inter
CUST_34026_PI429285431	0.9221498	A	0.9095677	A	1.0087593880144	0	lncRNA	35559-1_{1..1096}	n340844|CR622974|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3308|NULL|-0.9777530|-0.2133968	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340844|CR622974|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3308|NULL|-0.9777530|-0.2133968	chr6	 10743560	 10744655	-	NA	NA	NA	NA	TMEM14B	NA	chr6:10747995-10757214	inter
CUST_29559_PI429285431	0.9030836	A	1.58779	A	0.622132422699819	0	lncRNA	31319-1_{1..517}	n333043|AF220493|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000074355|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000074355|2.1996400|-0.1218866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333043|AF220493|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000074355|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000074355|2.1996400|-0.1218866	chr11	  7794501	  7795017	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17854_PI429285431	3.4454904	P	3.8905315	P	0.73456338984277	0	lncRNA	19589-1_{1..379}	lnc-HOXB7-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOXB7-1:5	chr17	 46716448	 46716826	-	lnc-HOXB7-1	lnc-HOXB7-1:5	XLOC_012505	linc-HOXB9	NA	NA	NA	inter
CUST_43772_PI429285431	0.90894085	A	1.7328001	A	0.564928719305563	0	lncRNA	48506-3_{6001..9000}	"gi|410170795|ref|XR_171117.1| PREDICTED: Homo sapiens hydrocephalus-inducing protein homolog (LOC100996292), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170795|ref|XR_171117.1| PREDICTED: Homo sapiens hydrocephalus-inducing protein homolog (LOC100996292), misc_RNA"	NA	NA	NA	NA	NA	XR_171117.1	NA	NA	NA	NA	NA	Unknown
CUST_30693_PI429285431	5.1378307	P	5.4254646	P	0.819244563954094	0	lncRNA	32475-1_{1..204}	n336186|X92878|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324599|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324599|-0.0965064|-0.0934444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336186|X92878|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324599|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324599|-0.0965064|-0.0934444	NA	NA	      203	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22070_PI429285431	0.9233753	A	0.9091134	A	1.0099346196867	0	lncRNA	23676-1_{1..907}	lnc-LIMCH1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIMCH1-2:1	chr4	 41825901	 41826807	+	lnc-LIMCH1-2	lnc-LIMCH1-2:1	ENSG00000250467.1	RP11-227F19.1	NA	"hg19_refFlat_PHOX2B:range=chr4:41747824-417506275'pad=0,hg19_refFlat_PHOX2B:range=chr4:41747824-417506275'pad=0 3'pad=0 strand=- repeatMasking=none,-100.40"	NA	inter
CUST_1142_PI429285431	0.90461344	A	0.900084	A	1.00314450217269	0	lncRNA	1131-1_{1..357}	"transcript_id ""ENST00000429916.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429916.1"" | genecode_v17"	chr2	154194219	154194575	+	ENSG00000227708.1	ENST00000429916.1	AC079150.3	AC079150.3-001	NA	NA	NA	inter
CUST_20080_PI429285431	6.8020563	P	6.9195213	P	0.921805959577256	0	lncRNA	21728-1_{1..797}	lnc-DIRC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DIRC1-1:1	chr2	189704012	189704808	-	lnc-DIRC1-1	lnc-DIRC1-1:1	ENSG00000223523.1	AC079613.1	NA	NA	NA	inter
CUST_18745_PI429285431	4.3935065	P	4.895284	P	0.706236113233225	0	lncRNA	20441-1_{1..339}	lnc-PEX2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PEX2-2:1	chr8	 77491378	 77491716	-	lnc-PEX2-2	lnc-PEX2-2:1	ENSG00000253681	RP11-115I9.1	NA	NA	NA	inter
LNCA_21_P0005668	0.9691349	A	0.92405295	A	1.03174178408994	0	lncRNA	ENST00000517573	NA	NA	NA	NA	XLOC_006734	NA	ENST00000517573	THC2709059	NA	"BROAD Institute lincRNA (XLOC_006734), lincRNA [TCONS_00014645]"	chr8:20832429-20832488	hs|8p21.3	Agilent_HUMAN_G3V2	ENST00000517573	ENST00000517573	chr8	 20832429	 20832488	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37924_PI429285431	3.5142982	P	3.8618646	P	0.785908684944512	0	lncRNA	39013-2_{3001..6000}	n346465|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2015|NULL|-1.4387300|-0.2230069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n346465|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2015|NULL|-1.4387300|-0.2230069	chr19	 36806987	 36809986	-	NA	NA	NA	NA	ZFP14	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-60.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90chr19:36825355-36832640"	NA	inter
CUST_22357_PI429285431	0.942003	A	0.912769	A	1.02047016245381	0	lncRNA	23951-1_{1..423}	lnc-TMEM242-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM242-2:1	chr6	157440708	157441130	-	lnc-TMEM242-2	lnc-TMEM242-2:1	ENSG00000233044.1	RP1-137K2.2	ARID1B	NA	chr6:157430708-157450840	inner
CUST_16852_PI429285431	1.9555821	A	1.5823581	A	1.29524408927552	0	lncRNA	18560-1_{1..3000}	lnc-ADARB1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADARB1-3:1	chr21	 46715936	 46718935	+	lnc-ADARB1-3	lnc-ADARB1-3:1	XLOC_013981	linc-COL18A1-4	POFUT2	NA	chr21:46705936-46707811	inter
CUST_39964_PI429285431	0.9920625	A	0.904754	A	1.06238633855225	0	lncRNA	40835-1_{1..2358}	n407020|NR_024517_4|lncRNA|Homosapiens||RefGeneNoncode|NR_024517_4||1.0689700|-0.2211226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407020|NR_024517_4|lncRNA|Homosapiens||RefGeneNoncode|NR_024517_4||1.0689700|-0.2211226	chr6	  4730148	  4732505	-	NA	NA	NA	NA	CDYL	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80chr6:4720148-4744611"	NA	inter
CUST_40802_PI429285431	3.6578848	P	2.467277	A	2.2824888300103	0	lncRNA	41510-1_{1..3000}	n410565|NR_037804|lncRNA|Homosapiens||RefGeneNoncode|NR_037804||14.2283000|-0.2590850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410565|NR_037804|lncRNA|Homosapiens||RefGeneNoncode|NR_037804||14.2283000|-0.2590850	chr3	132276981	132279980	-	NA	NA	NA	NA	UBA5	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70chr3:132365965-132396944"	NA	inter
CUST_49537_PI429285431	3.8948336	P	3.745007	P	1.10943611901743	0	lncRNA	53329-1_{1..757}	hg19_lincRNAsTranscripts_TCONS_l2_00024250 range=chr6:52442058-52444429 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024250 range=chr6:52442058-52444429 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 52442058	 52442814	+	NA	NA	NA	NA	TRAM2	NA	chr6:52432058-52441862	inter
CUST_49735_PI429285431	0.90989804	A	1.0722736	A	0.893552523954819	0	lncRNA	53506-2_{3001..3743}	hg19_lincRNAsTranscripts_TCONS_l2_00026509 range=chr7:35791484-35833619 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026509 range=chr7:35791484-35833619 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 35794484	 35795226	-	NA	NA	NA	NA	7-Sep	NA	chr7:35840627-35843619	inter
CUST_10845_PI429285431	3.447957	P	3.5284655	P	0.945724252952566	0	lncRNA	12383-1_{1..1067}	lnc-PTGR2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTGR2-1:3	chr14	 74269588	 74270654	+	lnc-PTGR2-1	lnc-PTGR2-1:3	XLOC_010870	linc-PTGR2	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70"	NA	inter
CUST_43291_PI429285431	3.8939052	P	3.454853	A	1.35571337871749	0	lncRNA	48109-1_{1..651}	ENST00000602481 havana:sense_intronic chromosome:GRCh37:X:41092886:41093536:1 gene:ENSG00000269941 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602481 havana:sense_intronic chromosome:GRCh37:X:41092886:41093536:1 gene:ENSG00000269941 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chrX	 41092886	 41093536	+	ENSG00000269941	ENST00000602481	NA	NA	USP9X	NA	chrX:41082886-41095832	inner
CUST_42105_PI429285431	5.1081233	P	5.4101	P	0.8111402556535	0	lncRNA	44063-1_{1..83}	ENST00000579667 ncrna:miRNA chromosome:GRCh37:22:46486924:46487006:1 gene:ENSG00000266533 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579667 ncrna:miRNA chromosome:GRCh37:22:46486924:46487006:1 gene:ENSG00000266533 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 46486924	 46487006	+	ENSG00000266533	ENST00000579667	NA	NA	NA	NA	NA	inter
CUST_150_PI429201921	1.6021256	A	0.92545974	A	1.59844140569451	0	lncRNA	131-1_{1..3000}	TC06002802.hg.1	TCONS_00011305-XLOC_005297 // Rinn lincRNAs // linc-TMEM63B-1 chr6:+:44041649-44045689 // chr6 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6:+:44041649-44045689	NA	Affy_HUMAN_HTA2.0	TCONS_00011305-XLOC_005297	linc-TMEM63B-1	chr6	 44041649	 44045689	+	NA	NA	NA	NA	PRDM16	NA	chr1:2985742-2990246	Unknown
CUST_50473_PI429285431	0.9224301	A	0.926784	A	0.996986655753629	0	lncRNA	54172-1_{1..1490}	hg19_lincRNAsTranscripts_TCONS_l2_00030544 range=chrX:79526368-79545259 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030544 range=chrX:79526368-79545259 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 79526368	 79527857	-	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
CUST_6598_PI429285431	5.1892843	P	4.608176	P	1.49599805548954	0	lncRNA	6546-1_{1..662}	"transcript_id ""ENST00000592146.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592146.1"" | genecode_v17"	chr19	 56989552	 56990213	+	ENSG00000166770.6	ENST00000592146.1	AC004696.2	AC004696.2-002	ZNF667	NA	chr19:56979552-56988770	inter
CUST_37487_PI429285431	3.6785893	P	3.9275084	P	0.84152667008108	0	lncRNA	38588-1_{1..1245}	n345948|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1497|NULL|-1.3432300|-0.2045301	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345948|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1497|NULL|-1.3432300|-0.2045301	chr6	125269076	125270320	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25225_PI429285431	2.9477458	A	3.2999158	P	0.783404868981353	0	lncRNA	26756-1_{1..673}	lnc-APOM-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-APOM-3:1	chr6	 31628177	 31628849	+	lnc-APOM-3	lnc-APOM-3:1	ENSG00000227198.1	C6orf47-AS1	CSNK2B	NA	chr6:31633657-31637843	inner
CUST_10571_PI429285431	0.90276486	A	0.9188221	A	0.988931679001813	0	lncRNA	12103-1_{1..313}	lnc-PCDH20-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH20-7:1	chr13	 64159888	 64160200	-	lnc-PCDH20-7	lnc-PCDH20-7:1	XLOC_010641	linc-PCDH20-6	NA	NA	NA	inter
CUST_27922_PI429285431	0.9143685	A	0.9107358	A	1.00252116857664	0	lncRNA	29523-1_{1..416}	n325166|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331368|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331368|-1.2500000|-0.4866850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325166|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331368|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331368|-1.2500000|-0.4866850	chr2	114303436	114303851	-	NA	NA	NA	NA	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10"	NA	inter
CUST_2310_PI429285431	11.928942	P	11.595021	P	1.26043437003738	0	lncRNA	2302-1_{1..292}	"transcript_id ""ENST00000508590.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508590.1"" | genecode_v17"	chr5	111496631	111496922	+	ENSG00000224032.2	ENST00000508590.1	EPB41L4A-AS1	EPB41L4A-AS1-004	EPB41L4A	NA	chr5:111498315-111508008	inter
CUST_23210_PI429285431	1.4103692	A	2.1107876	A	0.615393708749888	0	lncRNA	24782-1_{1..980}	lnc-C6orf108-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C6orf108-1:1	chr6	 43190728	 43191707	-	lnc-C6orf108-1	lnc-C6orf108-1:1	ENSG00000245261.1	RP3-330M21.5	CUL9	"hg19_refFlat_CUL9:range=chr6:43152049-431921835'pad=0,hg19_refFlat_CUL9:range=chr6:43152049-431921835'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.80chr6:43180728-43192325"	NA	inner
LNCA_21_P0005094	2.8983784	A	2.6477308	A	1.18974104863431	0	lncRNA	ENST00000413088	NA	NA	NA	NA	XLOC_005940	NA	ENST00000413088	NA	NA	"BROAD Institute lincRNA (XLOC_005940), lincRNA [TCONS_00012374]"	chr6:170125535-170125372	hs|6q27	Agilent_HUMAN_G3V2	ENST00000413088	ENST00000413088	chr6	170125372	170125535	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16354_PI429285431	1.4438695	A	2.1038785	A	0.63287434889719	0	lncRNA	18054-1_{1..620}	lnc-LHX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LHX2-1:1	chr9	126763172	126763791	+	lnc-LHX2-1	lnc-LHX2-1:1	XLOC_007557	linc-LHX2-2	NA	NA	NA	inter
CUST_5582_PI429285431	0.90806687	A	0.9061761	A	1.00131144108234	0	lncRNA	5511-1_{1..548}	"transcript_id ""ENST00000564046.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564046.1"" | genecode_v17"	chr16	 64398684	 64399231	+	ENSG00000259846.1	ENST00000564046.1	RP11-467L24.1	RP11-467L24.1-001	NA	NA	NA	inter
CUST_23239_PI429285431	0.98850405	A	1.3911195	A	0.756485612820361	0	lncRNA	24811-1_{1..653}	lnc-SLC26A11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC26A11-1:1	chr17	 78289854	 78290506	+	lnc-SLC26A11-1	lnc-SLC26A11-1:1	ENSG00000262979.1	CTD-2047H16.2	RNF213	NA	chr17:78279854-78300433	inner
CUST_7398_PI429285431	0.91985214	A	0.90719265	A	1.00881350200297	0	lncRNA	9043-1_{1..590}	lnc-PEX2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PEX2-1:5	chr8	 77527028	 77527617	-	lnc-PEX2-1	lnc-PEX2-1:5	ENSG00000253661	RP11-65D13.1	NA	NA	NA	inter
CUST_1439_PI429285431	0.8979248	A	0.90014666	A	0.998461109313869	0	lncRNA	1428-1_{1..411}	"transcript_id ""ENST00000497896.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000497896.1"" | genecode_v17"	chr3	111185160	111185570	-	ENSG00000239311.1	ENST00000497896.1	RP11-615J4.3	RP11-615J4.3-001	NA	NA	NA	inter
CUST_46530_PI429285431	6.82318	P	6.578387	P	1.18492274429114	0	lncRNA	50719-1_{1..1381}	"gi|300796928|ref|NR_034139.1| Homo sapiens epididymal protein pseudogene (LOC338963), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300796928|ref|NR_034139.1| Homo sapiens epididymal protein pseudogene (LOC338963), non-coding RNA"	Chr15	 83379223	 83380603	-	338963	NR_034139.1	NA	NA	NA	NA	NA	inter
CUST_15066_PI429285431	5.7668486	P	5.5952005	P	1.12634445874514	0	lncRNA	16729-1_{1..366}	lnc-AL079342.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL079342.1-1:1	chr6	 89674977	 89675342	+	lnc-AL079342.1-1	lnc-AL079342.1-1:1	XLOC_005376	linc-PNRC1	RNGTT	NA	chr6:89664977-89673348	inter
CUST_39203_PI429285431	2.9614856	A	2.9310796	A	1.02129949708156	0	lncRNA	40178-1_{1..2042}	n385986|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xmf.2||1.6679400|-0.2294675	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385986|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xmf.2||1.6679400|-0.2294675	chr10	 42970938	 42972979	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19905_PI429285431	3.1558347	P	3.0389798	A	1.08436834230117	0	lncRNA	21560-1_{1..805}	lnc-XXbac-B461K10.4.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XXbac-B461K10.4.1-2:1	chr22	 18560295	 18561099	-	lnc-XXbac-B461K10.4.1-2	lnc-XXbac-B461K10.4.1-2:1	ENSG00000225335.1	XXbac-B476C20.9	PEX26	NA	chr22:18560686-18570563	inter
CUST_25753_PI429285431	5.646335	P	5.7502103	P	0.930530085016895	0	lncRNA	27279-1_{1..710}	lnc-DHRS7B-5:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHRS7B-5:15	chr17	 20905196	 20905905	+	lnc-DHRS7B-5	lnc-DHRS7B-5:15	ENSG00000233098.3	RP11-344E13.3	USP22	NA	chr17:20902906-20915320	inner
CUST_3352_PI429285431	2.7791724	A	2.6142044	A	1.12114121004491	0	lncRNA	3327-1_{1..947}	"transcript_id ""ENST00000583427.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583427.1"" | genecode_v17"	chr8	145939284	145940230	+	ENSG00000263612.1	ENST00000583427.1	AF186192.6	AF186192.6-001	ZNF251	NA	chr8:145946294-145950230	inter
CUST_18748_PI429285431	2.924185	A	2.9206371	P	1.00246224323606	0	lncRNA	20444-1_{1..1579}	lnc-TUBGCP2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUBGCP2-1:6	chr10	135089210	135090788	-	lnc-TUBGCP2-1	lnc-TUBGCP2-1:6	ENSG00000151651	ADAM8	ADAM8	NA	chr10:135079210-135090407	inner
CUST_22377_PI429285431	0.91951036	A	1.190521	A	0.828738792445587	0	lncRNA	23970-1_{1..277}	lnc-RGS9-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RGS9-3:1	chr17	 63454507	 63454783	+	lnc-RGS9-3	lnc-RGS9-3:1	ENSG00000263520.1	CTD-2535L24.3	NA	NA	NA	inter
CUST_4118_PI429285431	2.6755686	A	3.663698	P	0.504131008273281	0	lncRNA	4078-1_{1..635}	"transcript_id ""ENST00000441665.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441665.1"" | genecode_v17"	chr11	131056917	131057551	+	ENSG00000236129.1	ENST00000441665.1	AP002856.4	AP002856.4-001	NA	NA	NA	inter
CUST_13300_PI429285431	0.9218384	A	0.921933	A	0.999934430426497	0	lncRNA	14934-1_{1..557}	lnc-SPATA18-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPATA18-1:2	chr4	 52912848	 52913404	+	lnc-SPATA18-1	lnc-SPATA18-1:2	XLOC_003536	linc-SPATA18	SPATA18	NA	chr4:52917593-52923108	inter
CUST_47954_PI429285431	11.384088	P	10.782893	P	1.51697257114394	0	lncRNA	51845-1_{1..1343}	"gi|410172558|ref|XR_171853.1| PREDICTED: Homo sapiens putative heterogeneous nuclear ribonucleoprotein A1-like 3-like (LOC101060467), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172558|ref|XR_171853.1| PREDICTED: Homo sapiens putative heterogeneous nuclear ribonucleoprotein A1-like 3-like (LOC101060467), misc_RNA"	NA	NA	NA	NA	NA	XR_171853.1	NA	NA	NA	NA	NA	Unknown
CUST_34712_PI429285431	3.8684266	P	4.0221963	P	0.898898607957557	0	lncRNA	36160-1_{1..3000}	n341620|BC038357|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4091|NULL|-1.1321900|-0.3862816	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341620|BC038357|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4091|NULL|-1.1321900|-0.3862816	chr8	139449100	139452099	-	NA	NA	NA	NA	FAM135B	NA	chr8:139439100-139499699	inner
LNCA_21_P0008802	0.9285007	A	0.9176368	A	1.00755870552758	0	lncRNA	TCONS_00023836	NA	NA	NA	NA	XLOC_011610	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011610), lincRNA [TCONS_00023836]"	chr15:101359113-101359054	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_00023836	TCONS_00023836	chr15	101359054	101359113	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013040	0.928204	A	2.2875993	A	0.389745615954057	0	lncRNA	TCONS_l2_00024448	NA	NA	NA	NA	XLOC_l2_012743	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012743), lincRNA [TCONS_l2_00024448]"	chr6:140180683-140181447	hs|6q24.1	Agilent_HUMAN_G3V2	TCONS_l2_00024448	TCONS_l2_00024448	chr6	140180683	140181447	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19322_PI429285431	1.3579013	A	1.1189255	A	1.18015454706688	0	lncRNA	20988-1_{1..544}	lnc-CLCNKB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLCNKB-2:1	chr1	 16487996	 16488539	+	lnc-CLCNKB-2	lnc-CLCNKB-2:1	ENSG00000224621.1	RP11-276H7.3	EPHA2	NA	chr1:16477996-16482582	inter
CUST_31349_PI429285431	0.9071527	A	0.9058994	A	1.00086909880909	0	lncRNA	33131-1_{1..2227}	n337817|AK098221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|200|NULL|-1.1449700|-0.2803208	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337817|AK098221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|200|NULL|-1.1449700|-0.2803208	chrX	107461381	107463607	+	NA	NA	NA	NA	COL4A6	"hg19_refFlat_COL4A6:range=chrX:107400230-1076826015'pad=0,hg19_refFlat_COL4A6:range=chrX:107400230-1076826015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_COL4A6:range=chrX:107400230-1076814265'pad=0,hg19_refFlat_COL4A6:range=chrX:107400230-1076814265'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40chrX:107451381-107473608"	NA	inner
CUST_35876_PI429285431	1.448296	A	0.8959137	A	1.46650531519348	0	lncRNA	37265-3_{6001..7765}	n344538|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_86|NULL|-1.3315700|-0.3806893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344538|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_86|NULL|-1.3315700|-0.3806893	chr10	 67336296	 67338060	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10"	NA	inter
CUST_7552_PI429285431	4.465134	P	3.975222	P	1.40435921149414	0	lncRNA	9188-1_{1..1360}	lnc-ADD1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ADD1-1:2	chr4	  2942029	  2943388	+	lnc-ADD1-1	lnc-ADD1-1:2	ENSG00000249673	RP11-520M5.5	NOP14	NA	chr4:2939663-2952231	inner
CUST_7185_PI429285431	0.92418176	A	0.911759	A	1.00864798065502	0	lncRNA	7444-1_{1..305}	"transcript_id ""ENST00000411010.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411010.1"" | genecode_v17"	chr3	 41808107	 41808411	-	ENSG00000222942.1	ENST00000411010.1	RN7SKP58	RN7SKP58-201	ULK4	NA	chr3:41798107-41818411	inner
CUST_10552_PI429285431	4.2932825	P	4.4495907	P	0.897318337903449	0	lncRNA	12083-1_{1..438}	lnc-COL6A3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL6A3-2:1	chr2	238092632	238093069	-	lnc-COL6A3-2	lnc-COL6A3-2:1	XLOC_002528	linc-IQCA1-6	NA	NA	NA	inter
CUST_41230_PI429285431	0.9163315	A	0.9159541	A	1.00026162796457	0	lncRNA	42139-1_{1..87}	ENST00000408494 ncrna:miRNA chromosome:GRCh37:19:54191735:54191821:1 gene:ENSG00000221421 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408494 ncrna:miRNA chromosome:GRCh37:19:54191735:54191821:1 gene:ENSG00000221421 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54191735	 54191821	+	ENSG00000221421	ENST00000408494	NA	NA	NA	NA	NA	inter
CUST_743_PI429285431	3.7109852	P	3.2698781	A	1.35764576241551	0	lncRNA	734-2_{3001..3231}	"transcript_id ""ENST00000602458.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602458.1"" | genecode_v17"	chr2	 10079489	 10079719	+	ENSG00000269973.1	ENST00000602458.1	RP11-95D17.1	RP11-95D17.1-001	TAF1B	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-23.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-60.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10chr2:10066489-10074545"	NA	inter
LNCA_21_P0001643	6.1248837	P	6.062421	P	1.04424678371497	0	lncRNA	TCONS_00001880	NA	NA	NA	NA	XLOC_001263	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001263), lincRNA [TCONS_00001880]"	chr1:234845191-234845132	hs|1q42.3	Agilent_HUMAN_G3V2	TCONS_00001880	TCONS_00001880	chr1	234845132	234845191	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17048_PI429285431	1.1142576	A	0.89619213	A	1.16317282553534	0	lncRNA	18758-1_{1..637}	lnc-CHD9-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD9-3:4	chr16	 52644602	 52645238	+	lnc-CHD9-3	lnc-CHD9-3:4	XLOC_011726	linc-CHD9-2	NA	NA	NA	inter
CUST_24551_PI429285431	5.4203134	P	5.5492754	P	0.914489176455264	0	lncRNA	26101-1_{1..389}	lnc-B4GALNT3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-B4GALNT3-1:1	chr12	   700187	   700575	+	lnc-B4GALNT3-1	lnc-B4GALNT3-1:1	ENSG00000255825.1	RP5-1154L15.1	NINJ2	NA	chr12:690187-710435	inner
CUST_30588_PI429285431	1.3557018	A	1.1802657	A	1.12930572142768	0	lncRNA	32370-1_{1..478}	n335875|X61011|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322420|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322420|2.6578300|-0.2377339	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335875|X61011|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322420|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322420|2.6578300|-0.2377339	chr14	106329409	106329886	-	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106859077	inter
LNCA_21_P0006238	0.9220426	A	1.6607661	A	0.59926935274923	0	lncRNA	TCONS_00016208	NA	NA	NA	NA	XLOC_007598	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007598), lincRNA [TCONS_00016208]"	chr9:137375020-137375079	hs|9q34.2	Agilent_HUMAN_G3V2	TCONS_00016208	TCONS_00016208	chr9	137375020	137375079	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5477_PI429285431	1.1635035	A	1.7750664	A	0.654487298740549	0	lncRNA	5411-1_{1..689}	"transcript_id ""ENST00000564381.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564381.1"" | genecode_v17"	chr16	 27169775	 27170463	-	ENSG00000261045.1	ENST00000564381.1	RP11-673P17.4	RP11-673P17.4-001	NA	NA	NA	inter
CUST_41399_PI429285431	0.9127233	A	0.9068665	A	1.0040678758444	0	lncRNA	42512-1_{1..92}	ENST00000580818 ncrna:miRNA chromosome:GRCh37:6:91022461:91022552:1 gene:ENSG00000266760 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580818 ncrna:miRNA chromosome:GRCh37:6:91022461:91022552:1 gene:ENSG00000266760 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 91022461	 91022552	+	ENSG00000266760	ENST00000580818	NA	NA	NA	NA	NA	inter
CUST_41906_PI429285431	3.437444	P	3.3307805	P	1.07673520484769	0	lncRNA	43634-1_{1..75}	ENST00000583240 ncrna:miRNA chromosome:GRCh37:9:95290266:95290340:-1 gene:ENSG00000264158 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583240 ncrna:miRNA chromosome:GRCh37:9:95290266:95290340:-1 gene:ENSG00000264158 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 95290266	 95290340	-	ENSG00000264158	ENST00000583240	NA	NA	ECM2	NA	chr9:95280266-95298374	inner
CUST_23376_PI429285431	0.9188112	A	1.0281068	A	0.927040581637634	0	lncRNA	24944-1_{1..620}	lnc-CLEC6A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLEC6A-2:1	chr12	  8521578	  8522197	+	lnc-CLEC6A-2	lnc-CLEC6A-2:1	ENSG00000256552.1	RP11-113C12.3	CLEC6A	NA	chr12:8511606-8532151	inter
CUST_27247_PI429285431	3.6455777	P	3.1698098	A	1.39065822536719	0	lncRNA	28797-1_{1..1345}	n324390|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042240|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042240|-0.2096380|-0.2388755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324390|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042240|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042240|-0.2096380|-0.2388755	chr6	132496810	132498154	+	NA	NA	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-22.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50"	NA	inter
CUST_44180_PI429285431	10.256947	P	10.829395	P	0.672474748293428	0	lncRNA	48836-1_{1..500}	"gi|388490224|ref|NR_046572.1| Homo sapiens ARHGEF3 antisense RNA 1 (ARHGEF3-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|388490224|ref|NR_046572.1| Homo sapiens ARHGEF3 antisense RNA 1 (ARHGEF3-AS1), non-coding RNA"	Chr3	 56974068	 56974567	+	100874200	NR_046572.1	NA	NA	NA	NA	NA	inter
CUST_15723_PI429285431	4.870896	P	5.110973	P	0.846700120795832	0	lncRNA	17408-1_{1..1177}	lnc-GBP5-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GBP5-4:1	chr1	 90228890	 90230066	-	lnc-GBP5-4	lnc-GBP5-4:1	XLOC_000910	linc-GBP5-3	NA	NA	NA	inter
LNCA_21_P0011522	9.828667	P	9.6270685	P	1.14997181327613	0	lncRNA	TCONS_l2_00010603	NA	NA	NA	NA	XLOC_l2_005692	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005692), lincRNA [TCONS_l2_00010603]"	chr17:19499138-19499197	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00010603	TCONS_l2_00010603	chr17	 19499138	 19499197	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18539_PI429285431	4.280946	P	4.8283515	P	0.684249556683698	0	lncRNA	20251-1_{1..578}	lnc-HSCB-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HSCB-1:9	chr22	 28393399	 28393976	+	lnc-HSCB-1	lnc-HSCB-1:9	ENSG00000235954	TTC28-AS1	TTC28	NA	chr22:28383399-28403655	inner
CUST_21438_PI429285431	0.91389513	A	0.89673144	A	1.01196801368133	0	lncRNA	23057-1_{1..711}	lnc-SPRYD3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPRYD3-1:3	chr12	 53448105	 53448815	-	lnc-SPRYD3-1	lnc-SPRYD3-1:3	ENSG00000257337.1	RP11-983P16.4	SPRYD3	"hg19_refFlat_TENC1:range=chr12:53442928-534576665'pad=0,hg19_refFlat_TENC1:range=chr12:53442928-534576665'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_TENC1:range=chr12:53448076-534576665'pad=0,hg19_refFlat_TENC1:range=chr12:53448076-534576665'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_TENC1:range=chr12:53443970-534576665'pad=0,hg19_refFlat_TENC1:range=chr12:53443970-534576665'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_EIF4B:range=chr12:53400268-534340075'pad=0,hg19_refFlat_EIF4B:range=chr12:53400268-534340075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70chr12:53458100-53458168"	NA	inner
CUST_25618_PI429285431	4.2904716	P	4.6655593	P	0.771058539395778	0	lncRNA	27148-1_{1..376}	lnc-ARID3B-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARID3B-3:6	chr15	 74773546	 74773921	+	lnc-ARID3B-3	lnc-ARID3B-3:6	ENSG00000247240.3	RP11-10O17.2	NA	NA	NA	inter
CUST_7629_PI429285431	10.189244	P	9.961939	P	1.17064610147955	0	lncRNA	9261-1_{1..1181}	lnc-RALGAPB-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RALGAPB-1:9	chr20	 37079176	 37080356	+	lnc-RALGAPB-1	lnc-RALGAPB-1:9	ENSG00000174365	SNHG11	NA	NA	NA	inter
CUST_22956_PI429285431	1.432552	A	1.2843239	A	1.1082075492433	0	lncRNA	24532-1_{1..460}	lnc-SMAD5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMAD5-1:1	chr5	135557764	135558223	+	lnc-SMAD5-1	lnc-SMAD5-1:1	ENSG00000248211.1	TRPC7-AS1	TRPC7	NA	chr5:135548999-135567847	inner
CUST_23453_PI429285431	5.0999074	P	5.423269	P	0.799205490767769	0	lncRNA	25021-1_{1..733}	lnc-C5orf27-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C5orf27-2:2	chr5	 95198340	 95199072	+	lnc-C5orf27-2	lnc-C5orf27-2:2	ENSG00000250362.1	AC008592.5	NA	NA	NA	inter
CUST_11484_PI429285431	1.1342415	A	1.0539682	A	1.05721829798697	0	lncRNA	13052-1_{1..442}	lnc-PCMTD2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCMTD2-2:1	chr20	 62961031	 62961472	+	lnc-PCMTD2-2	lnc-PCMTD2-2:1	XLOC_013617	TCONS_00028271	NA	NA	NA	inter
CUST_42675_PI429285431	1.4299576	A	1.9603614	A	0.692360920074809	0	lncRNA	45590-1_{1..72}	ENST00000363836 ncrna:snoRNA chromosome:GRCh37:6:38175050:38175121:1 gene:ENSG00000200706 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363836 ncrna:snoRNA chromosome:GRCh37:6:38175050:38175121:1 gene:ENSG00000200706 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	 38175050	 38175121	+	ENSG00000200706	ENST00000363836	NA	NA	BTBD9	NA	chr6:38165050-38185121	inner
CUST_33797_PI429285431	0.9126525	A	0.9000157	A	1.00879763600378	0	lncRNA	35349-1_{1..2028}	n340585|AK097686|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3047|NULL|-0.9797910|-0.2596197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340585|AK097686|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3047|NULL|-0.9797910|-0.2596197	chr5	113783114	113785141	-	NA	NA	NA	NA	KCNN2	"hg19_refFlat_KCNN2:range=chr5:113698473-1138318795'pad=0,hg19_refFlat_KCNN2:range=chr5:113698473-1138318795'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.10;hg19_refFlat_KCNN2:range=chr5:113798789-1138318795'pad=0,hg19_refFlat_KCNN2:range=chr5:113798789-1138318795'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.10chr5:113773114-113832197"	NA	inner
LNCA_21_P0014606	2.31889	A	2.9583826	A	0.641938680766265	0	lncRNA	ENST00000415255	XR_110500	XR_110500	NA	NA	LOC100506950	NA	ENST00000415255	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506950 (LOC100506950), miscRNA [XR_110500]"	chr1:40038784-40038843	hs|1p34.3	Agilent_HUMAN_G3V2	ENST00000415255	ENST00000415255	chr1	 40038784	 40038843	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40114_PI429285431	5.161844	P	5.3427453	P	0.882151714330897	0	lncRNA	40958-2_{3001..3117}	n407566|NR_027024|lncRNA|Homosapiens||RefGeneNoncode|NR_027024||11.9366000|-0.2191142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407566|NR_027024|lncRNA|Homosapiens||RefGeneNoncode|NR_027024||11.9366000|-0.2191142	chr15	 78209558	 78209674	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26966_PI429285431	0.8956747	A	0.88938427	A	1.00436971329464	0	lncRNA	28489-1_{1..822}	n324050|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053003|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053003|0.3361980|-0.4069801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324050|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053003|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053003|0.3361980|-0.4069801	chr9	 91506385	 91507206	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49761_PI429285431	1.2597129	A	1.1497985	A	1.07916420412488	0	lncRNA	53526-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00025850 range=chr7:45836952-45863174 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025850 range=chr7:45836952-45863174 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 45836952	 45839951	+	NA	NA	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-26.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.11"	NA	inter
CUST_4895_PI429285431	6.6972733	P	6.680092	P	1.011980366164	0	lncRNA	4837-1_{1..715}	"transcript_id ""ENST00000558575.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000558575.1"" | genecode_v17"	chr14	 75761110	 75761824	+	ENSG00000259687.1	ENST00000558575.1	RP11-293M10.5	RP11-293M10.5-001	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.30;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_19064_PI429285431	0.9239092	A	0.9047647	A	1.01335839281737	0	lncRNA	20755-2_{3001..4915}	lnc-LRRC9-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-LRRC9-1:3	chr14	 60533041	 60534955	+	lnc-LRRC9-1	lnc-LRRC9-1:3	ENSG00000131951	LRRC9	NA	NA	NA	inter
CUST_46218_PI429285431	7.0818434	P	6.18601	P	1.86068443428617	0	lncRNA	50459-1_{1..874}	"gi|83715986|ref|NR_002605.1| Homo sapiens deleted in lymphocytic leukemia 1 (non-protein coding) (DLEU1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|83715986|ref|NR_002605.1| Homo sapiens deleted in lymphocytic leukemia 1 (non-protein coding) (DLEU1), non-coding RNA"	Chr13	 50656414	 50657287	+	10301	NR_002605.1	NA	NA	NA	NA	NA	inter
CUST_18609_PI429285431	1.014006	A	0.90213466	A	1.08062902690366	0	lncRNA	20316-1_{1..940}	lnc-FRG1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FRG1B-1:1	chr20	 29641421	 29642360	+	lnc-FRG1B-1	lnc-FRG1B-1:1	ENSG00000223346	RP11-348I14.4	NA	NA	NA	inter
CUST_17781_PI429285431	11.43022	P	11.71637	P	0.820087640548542	0	lncRNA	19513-1_{1..642}	lnc-NPAS2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NPAS2-1:2	chr2	101363677	101364318	+	lnc-NPAS2-1	lnc-NPAS2-1:2	XLOC_001591	linc-NPAS2-1	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00"	NA	inter
CUST_50644_PI429285431	1.0261685	A	0.91813517	A	1.07775804376422	0	lncRNA	54325-1_{1..1195}	hg19_lincRNAsTranscripts_TCONS_l2_00002966 range=chr10:35262922-35264491 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002966 range=chr10:35262922-35264491 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 35262922	 35264116	+	NA	NA	NA	NA	CUL2	NA	chr10:35253997-35274491	inter
CUST_39112_PI429285431	1.605778	A	1.5244846	A	1.05796609965433	0	lncRNA	40089-1_{1..1561}	n385676|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bfk.3||1.0627500|-0.2304894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385676|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bfk.3||1.0627500|-0.2304894	chr9	114365110	114366670	-	NA	NA	NA	NA	DNAJC25-GNG10	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-23.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.94;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50chr9:114393632-114403569"	NA	inter
CUST_772_PI429285431	1.3787595	A	0.9186288	A	1.37566644008302	0	lncRNA	764-1_{1..1039}	"transcript_id ""ENST00000433810.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433810.1"" | genecode_v17"	chr2	 16060521	 16061559	+	ENSG00000223850.1	ENST00000433810.1	AC010145.3	AC010145.3-001	MYCN	NA	chr2:16080683-16086139	inter
CUST_4679_PI429285431	1.7982731	A	1.0362884	A	1.69582194472168	0	lncRNA	4625-1_{1..692}	"transcript_id ""ENST00000437334.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437334.1"" | genecode_v17"	chr13	 98327265	 98327956	-	ENSG00000226134.1	ENST00000437334.1	RP11-120E13.1	RP11-120E13.1-001	NA	NA	NA	inter
CUST_21737_PI429285431	0.9198035	A	0.9084697	A	1.00788693078285	0	lncRNA	23347-1_{1..561}	lnc-RARS-4:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RARS-4:8	chr5	168449138	168449698	+	lnc-RARS-4	lnc-RARS-4:8	ENSG00000248222.1	CTB-174D11.1	SLIT3	NA	chr5:168439138-168459216	inner
CUST_5859_PI429285431	2.2510326	A	1.9397492	A	1.24081101610075	0	lncRNA	5788-1_{1..544}	"transcript_id ""ENST00000587874.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587874.1"" | genecode_v17"	chr17	 41454943	 41455486	-	ENSG00000188825.8	ENST00000587874.1	CTD-3014M21.4	CTD-3014M21.4-006	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00"	NA	inter
CUST_51596_PI429285431	4.796882	P	4.6978426	P	1.07106007344148	0	lncRNA	55161-1_{1..1419}	hg19_lincRNAsTranscripts_TCONS_l2_00010631 range=chr17:21904035-21905811 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010631 range=chr17:21904035-21905811 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 21904035	 21905453	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35506_PI429285431	3.2126586	P	1.8941469	A	2.49408684292228	0	lncRNA	36915-1_{1..3000}	n342611|D21211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5112|NULL|16.5493000|-0.1473824	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342611|D21211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5112|NULL|16.5493000|-0.1473824	chr4	 87515884	 87518883	+	NA	NA	NA	NA	PTPN13	NA	chr4:87515468-87736329	inner
CUST_46485_PI429285431	4.9548774	P	3.1143198	P	3.58148425585305	0	lncRNA	50681-1_{1..3000}	"gi|110578651|ref|NR_003105.1| Homo sapiens Zwilch, kinetochore associated, homolog (Drosophila) (ZWILCH), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|110578651|ref|NR_003105.1| Homo sapiens Zwilch, kinetochore associated, homolog (Drosophila) (ZWILCH), transcript variant 2, non-coding RNA"	Chr15	 66797431	 66800430	+	55055	NR_003105.1	NA	NA	NA	"hg19_refFlat_LCTL:range=chr15:66840828-668577035'pad=0,hg19_refFlat_LCTL:range=chr15:66840828-668577035'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10"	NA	inter
CUST_46136_PI429285431	1.6453216	A	1.7812593	A	0.910078123199072	0	lncRNA	50390-1_{1..3000}	"gi|300068996|ref|NR_033951.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|300068996|ref|NR_033951.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NR_033951.1	NA	NA	NA	"hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	Unknown
CUST_51187_PI429285431	4.6866	P	3.6352353	P	2.07248936710321	0	lncRNA	54807-1_{1..872}	hg19_lincRNAsTranscripts_TCONS_l2_00007928 range=chr14:103673868-103675204 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007928 range=chr14:103673868-103675204 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	103673868	103674739	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005496	0.9261796	A	0.91407394	A	1.00842630724657	0	lncRNA	TCONS_00013799	NA	NA	NA	NA	XLOC_006439	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006439), lincRNA [TCONS_00013799]"	chr7:50294112-50294053	hs|7p12.2	Agilent_HUMAN_G3V2	TCONS_00013799	TCONS_00013799	chr7	 50294053	 50294112	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43281_PI429285431	2.4054658	A	2.545462	A	0.907521545688815	0	lncRNA	48099-1_{1..554}	ENST00000602771 havana:sense_intronic chromosome:GRCh37:8:98156398:98156951:1 gene:ENSG00000270077 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602771 havana:sense_intronic chromosome:GRCh37:8:98156398:98156951:1 gene:ENSG00000270077 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr8	 98156398	 98156951	+	ENSG00000270077	ENST00000602771	NA	NA	PGCP	NA	chr8:98146398-98155722	inter
CUST_41000_PI429285431	1.2257137	A	1.1644623	A	1.04337039249391	0	lncRNA	41665-1_{1..3000}	n411518|NR_039988|lncRNA|Homosapiens||RefGeneNoncode|NR_039988||0.3355420|-0.2130761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411518|NR_039988|lncRNA|Homosapiens||RefGeneNoncode|NR_039988||0.3355420|-0.2130761	chr22	 40428335	 40431334	+	NA	NA	NA	NA	TNRC6B	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00chr22:40440821-40442581"	NA	inter
CUST_49219_PI429285431	1.1957374	A	0.91827357	A	1.21206227879563	0	lncRNA	53039-1_{1..285}	hg19_lincRNAsTranscripts_TCONS_l2_00020925 range=chr4:184718946-184719817 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020925 range=chr4:184718946-184719817 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	184718946	184719230	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45218_PI429285431	1.7193937	A	0.91672397	A	1.74432604473607	0	lncRNA	49679-1_{1..3000}	"gi|295849284|ref|NR_033651.1| Homo sapiens uncharacterized LOC100132891 (LOC100132891), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|295849284|ref|NR_033651.1| Homo sapiens uncharacterized LOC100132891 (LOC100132891), transcript variant 2, non-coding RNA"	Chr8	 72756351	 72759350	+	100132891	NR_033651.1	NA	NA	NA	"hg19_refFlat_MSC:range=chr8:72754896-727564135'pad=0,hg19_refFlat_MSC:range=chr8:72754896-727564135'pad=0 3'pad=0 strand=- repeatMasking=none,-95.20;hg19_refFlat_TRPA1:range=chr8:72935141-729876445'pad=0,hg19_refFlat_TRPA1:range=chr8:72935141-729876445'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70"	NA	inter
CUST_10953_PI429285431	1.3348277	A	0.9453479	A	1.30992099371754	0	lncRNA	12494-1_{1..1085}	lnc-CHD9-7:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD9-7:6	chr16	 52132212	 52133296	+	lnc-CHD9-7	lnc-CHD9-7:6	XLOC_011723	linc-CHD9-5	NA	NA	NA	inter
CUST_4597_PI429285431	0.9178044	A	0.9068957	A	1.0075899937275	0	lncRNA	4546-1_{1..435}	"transcript_id ""ENST00000441430.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441430.1"" | genecode_v17"	chr13	 39150777	 39151211	+	ENSG00000229437.1	ENST00000441430.1	LINC00366	LINC00366-001	NA	NA	NA	inter
LNCA_21_P0002339	0.93957996	A	1.6200845	A	0.623947029237009	0	lncRNA	TCONS_00003998	NA	NA	NA	NA	XLOC_001823	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001823), lincRNA [TCONS_00003998]"	chr2:207799660-207799719	hs|2q33.3	Agilent_HUMAN_G3V2	TCONS_00003998	TCONS_00003998	chr2	207799660	207799719	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24652_PI429285431	2.9024088	A	3.287127	P	0.765928591907321	0	lncRNA	26201-1_{1..548}	lnc-CD177-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CD177-1:2	chr19	 43658863	 43659410	+	lnc-CD177-1	lnc-CD177-1:2	ENSG00000227606.1	AC005392.13	NA	NA	NA	inter
CUST_22572_PI429285431	1.2179453	A	0.9034602	A	1.24356774291505	0	lncRNA	24159-1_{1..820}	lnc-PAX6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-PAX6-2:1	chr11	 32062654	 32063473	-	lnc-PAX6-2	lnc-PAX6-2:1	ENSG00000254584.1	RP1-17K7.2	NA	NA	NA	inter
CUST_36810_PI429285431	0.92770445	A	0.91530395	A	1.0086324178852	0	lncRNA	37982-1_{1..1254}	n345290|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_839|NULL|-1.2943300|-0.2262865	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345290|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_839|NULL|-1.2943300|-0.2262865	chr15	 67220822	 67222075	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47532_PI429285431	4.3729324	P	4.916728	P	0.685963824274213	0	lncRNA	51543-1_{1..1625}	"gi|224451006|ref|NR_027036.1| Homo sapiens uncharacterized LOC100271722 (LOC100271722), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224451006|ref|NR_027036.1| Homo sapiens uncharacterized LOC100271722 (LOC100271722), non-coding RNA"	Chr22	 46435787	 46437411	-	100271722	NR_027036.1	NA	NA	NA	NA	NA	inter
CUST_19690_PI429285431	0.90767086	A	2.0033932	A	0.467901792276799	0	lncRNA	21348-1_{1..601}	lnc-STX3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STX3-2:2	chr11	 59406793	 59407393	+	lnc-STX3-2	lnc-STX3-2:2	ENSG00000255139.1	AP000442.1	PATL1	"hg19_refFlat_PATL1:range=chr11:59405863-594363685'pad=0,hg19_refFlat_PATL1:range=chr11:59405863-594363685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80chr11:59404189-59417334"	NA	inner
CUST_13043_PI429285431	0.98242474	A	0.92450255	A	1.04096545296614	0	lncRNA	14668-1_{1..1245}	lnc-NFKBID-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NFKBID-1:1	chr19	 36375959	 36377203	-	lnc-NFKBID-1	lnc-NFKBID-1:1	XLOC_013323	linc-NPHS1	NFKBID	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90chr19:36379143-36386739"	NA	inter
CUST_4023_PI429285431	0.9127558	A	0.9109138	A	1.00127759253348	0	lncRNA	3984-1_{1..720}	"transcript_id ""ENST00000534593.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534593.1"" | genecode_v17"	chr11	 78804331	 78805050	+	ENSG00000255345.1	ENST00000534593.1	CTD-2337I7.1	CTD-2337I7.1-003	ODZ4	NA	chr11:78794331-78819048	inner
CUST_18270_PI429285431	0.9062333	A	1.0056273	A	0.933424991747934	0	lncRNA	20004-1_{1..3000}	lnc-WHAMM-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-WHAMM-2:4	chr15	 83421645	 83424644	+	lnc-WHAMM-2	lnc-WHAMM-2:4	ENSG00000250988	AC105339.1	FSD2	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80chr15:83428024-83435831"	NA	inter
CUST_36253_PI429285431	0.909374	A	0.8950019	A	1.0100117663065	0	lncRNA	37495-1_{1..1164}	n344788|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_337|NULL|-1.3296200|-0.4329368	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344788|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_337|NULL|-1.3296200|-0.4329368	chr5	 92763995	 92765158	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47280_PI429285431	5.0046263	P	5.457677	P	0.730496517302561	0	lncRNA	51349-1_{1..1612}	"gi|334358902|ref|NR_038338.1| Homo sapiens uncharacterized LOC100505783 (LOC100505783), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|334358902|ref|NR_038338.1| Homo sapiens uncharacterized LOC100505783 (LOC100505783), transcript variant 2, non-coding RNA"	Chr20	 42839722	 42841333	+	100505783	NR_038338.1	NA	NA	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90"	NA	inter
CUST_46642_PI429285431	7.202659	P	7.8432083	P	0.641468665813671	0	lncRNA	50815-1_{1..1703}	"gi|313661354|ref|NR_037620.1| Homo sapiens origin recognition complex, subunit 6 (ORC6), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|313661354|ref|NR_037620.1| Homo sapiens origin recognition complex, subunit 6 (ORC6), transcript variant 2, non-coding RNA"	Chr16	 46723558	 46725260	+	23594	NR_037620.1	NA	NA	NA	"hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90"	NA	inter
CUST_31371_PI429285431	0.9242275	A	0.9262266	A	0.99861528906947	0	lncRNA	33150-1_{1..1052}	n337838|CR620152|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|221|NULL|-0.9400450|-0.3210275	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337838|CR620152|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|221|NULL|-0.9400450|-0.3210275	chrX	117028594	117029645	-	NA	NA	NA	NA	KLHL13	NA	chrX:117031776-117039646	inter
CUST_25907_PI429285431	1.7318904	A	2.6415951	A	0.532294033406246	0	lncRNA	27426-1_{1..417}	lnc-LGSN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LGSN-1:1	chr6	 65443266	 65443682	-	lnc-LGSN-1	lnc-LGSN-1:1	ENSG00000243828.1	RP11-69I22.3	EYS	NA	chr6:65433266-65453460	inner
CUST_25007_PI429285431	2.1848311	A	1.4041948	A	1.71788837971273	0	lncRNA	26547-1_{1..285}	lnc-IKZF1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IKZF1-2:1	chr7	 51088669	 51088953	+	lnc-IKZF1-2	lnc-IKZF1-2:1	ENSG00000228204.2	RP4-724E13.2	COBL	NA	chr7:51083909-51098749	inner
CUST_1473_PI429285431	8.723474	P	9.056476	P	0.793882830375598	0	lncRNA	1460-1_{1..539}	"transcript_id ""ENST00000504735.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504735.1"" | genecode_v17"	chr3	139556062	139556600	+	ENSG00000251471.1	ENST00000504735.1	RP11-166D18.1	RP11-166D18.1-001	NA	NA	NA	inter
CUST_30461_PI429285431	1.5751218	A	3.1538167	P	0.334784606741185	0	lncRNA	32241-1_{1..238}	n335604|CR597396|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000276591|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000276591|-1.1425400|-0.3725113	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335604|CR597396|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000276591|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000276591|-1.1425400|-0.3725113	chr15	 58245627	 58245864	-	NA	NA	NA	NA	ALDH1A2	NA	chr15:58245622-58255865	inner
CUST_15920_PI429285431	1.3830076	A	3.4040105	P	0.246386838965551	0	lncRNA	17615-1_{1..410}	lnc-C7orf11-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C7orf11-7:2	chr7	 39605742	 39606151	-	lnc-C7orf11-7	lnc-C7orf11-7:2	XLOC_006414	linc-VPS41-5	C7orf36	NA	chr7:39606003-39612480	inter
CUST_44922_PI429285431	11.013965	P	10.652299	P	1.28490883230073	0	lncRNA	49438-1_{1..1489}	"gi|310119952|ref|XR_108769.1| PREDICTED: Homo sapiens uncharacterized LOC402481 (PP13004), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119952|ref|XR_108769.1| PREDICTED: Homo sapiens uncharacterized LOC402481 (PP13004), misc_RNA"	NA	NA	NA	NA	NA	XR_108769.1	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00316533	4.9435663	P	4.9080324	P	1.02493605225402	0	lncRNA	AK093009	NA	AK093009	NA	Hs.595233	XLOC_013732	NA	NA	THC2496488	NA	"BROAD Institute lincRNA (XLOC_013732), lincRNA [TCONS_00028662]"	chr20:36130408-36130349	hs|20q11.23	Agilent_HUMAN_G3V2	AK093009	AK093009	chr20	 36130349	 36130408	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11177_PI429285431	7.400563	P	7.3966813	P	1.00269421229497	0	lncRNA	12734-1_{1..806}	lnc-MYC-2:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYC-2:13	chr8	128944711	128945516	+	lnc-MYC-2	lnc-MYC-2:13	XLOC_006922	linc-EFR3A-7	NA	NA	NA	inter
CUST_11196_PI429285431	4.2966895	P	4.666771	P	0.773738785875639	0	lncRNA	12754-1_{1..622}	lnc-ZNF146-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF146-1:2	chr19	 36811922	 36812543	+	lnc-ZNF146-1	lnc-ZNF146-1:2	XLOC_013054	linc-ZNF382-3	NA	NA	NA	inter
CUST_11478_PI429285431	1.7661172	A	1.51236	A	1.19230819458306	0	lncRNA	13044-1_{1..762}	lnc-CFL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CFL1-1:1	chr11	 65585461	 65586222	-	lnc-CFL1-1	lnc-CFL1-1:1	XLOC_009475	linc-DKFZp761E198	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30"	NA	inter
CUST_5924_PI429285431	2.8877687	A	3.404926	P	0.698747295920876	0	lncRNA	5852-1_{1..699}	"transcript_id ""ENST00000589740.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589740.1"" | genecode_v17"	chr17	 58156670	 58157368	+	ENSG00000267416.1	ENST00000589740.1	CTD-2319I12.2	CTD-2319I12.2-001	HEATR6	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.52;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60chr17:58146670-58156292"	NA	inter
CUST_33085_PI429285431	0.9164703	A	0.90834796	A	1.00564585517526	0	lncRNA	34689-1_{1..729}	n339773|BC032898|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2220|NULL|-0.6879350|-0.1232784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339773|BC032898|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2220|NULL|-0.6879350|-0.1232784	chr4	   830299	   831027	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6573_PI429285431	1.9952315	A	2.0741107	A	0.94679290495117	0	lncRNA	6521-2_{3001..4060}	"transcript_id ""ENST00000596769.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596769.1"" | genecode_v17"	chr19	 53513765	 53514824	+	ENSG00000267943.1	ENST00000596769.1	CTD-2620I22.3	CTD-2620I22.3-001	ERVV-1	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr19:53507196-53519833"	NA	inter
CUST_4564_PI429285431	6.293744	P	6.0211773	P	1.20795499088766	0	lncRNA	4513-1_{1..1147}	"transcript_id ""ENST00000413501.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413501.1"" | genecode_v17"	chr13	 25746966	 25748112	-	ENSG00000234056.1	ENST00000413501.1	RP11-165I9.4	RP11-165I9.4-001	FAM123A	NA	chr13:25742660-25745857	inter
CUST_19235_PI429285431	0.919669	A	0.9244931	A	0.996661772997284	0	lncRNA	20904-1_{1..558}	lnc-HMGB4-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMGB4-1:5	chr1	 34339149	 34339706	+	lnc-HMGB4-1	lnc-HMGB4-1:5	ENSG00000231163.1	AL121980.1	CSMD2	NA	chr1:34329149-34349248	inner
CUST_13808_PI429285431	1.860244	A	2.3449597	A	0.714637883782875	0	lncRNA	15450-1_{1..267}	lnc-SPAG1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPAG1-3:4	chr8	101505022	101505288	+	lnc-SPAG1-3	lnc-SPAG1-3:4	XLOC_006883	linc-GRHL2-7	NA	NA	NA	inter
CUST_42357_PI429285431	4.8278933	P	5.7319226	P	0.534392142411775	0	lncRNA	45026-1_{1..137}	ENST00000363089 ncrna:snoRNA chromosome:GRCh37:1:84743004:84743140:1 gene:ENSG00000199959 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363089 ncrna:snoRNA chromosome:GRCh37:1:84743004:84743140:1 gene:ENSG00000199959 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 84743004	 84743140	+	ENSG00000199959	ENST00000363089	NA	NA	NA	NA	NA	inter
CUST_38748_PI429285431	0.91531056	A	0.90376985	A	1.00803149136848	0	lncRNA	39739-1_{1..2038}	n384284|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003dtq.2||-1.1240300|-0.3839292	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384284|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003dtq.2||-1.1240300|-0.3839292	chr3	 99652068	 99654105	+	NA	NA	NA	NA	C3orf26	NA	chr3:99642068-99664106	inner
LNCA_21_P0014164	3.2432673	P	3.7666686	P	0.69572964486506	0	lncRNA	XR_108660	XR_108660	XR_108660	NA	NA	LOC100505966	uncharacterized LOC100505966	NA	THC2620873	NA	"PREDICTED: Homo sapiens hypothetical LOC100505966 (LOC100505966), miscRNA [XR_108660]"	chr6:49682090-49682149	hs|6p12.3	Agilent_HUMAN_G3V2	XR_108660	XR_108660	chr6	 49682090	 49682149	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008843	0.929811	A	0.9208286	A	1.00624554784065	0	lncRNA	TCONS_00024045	NA	NA	NA	NA	XLOC_011403	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011403), lincRNA [TCONS_00024045]"	chr15:24588504-24587893	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00024045	TCONS_00024045	chr15	 24587893	 24588504	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4650_PI429285431	3.8103023	P	4.0973973	P	0.819550639285236	0	lncRNA	4596-1_{1..807}	"transcript_id ""ENST00000600832.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600832.1"" | genecode_v17"	chr13	 75129470	 75130276	+	ENSG00000236678.2	ENST00000600832.1	LINC00347	LINC00347-003	NA	NA	NA	inter
CUST_43458_PI429285431	8.64877	P	8.771196	P	0.918641586296954	0	lncRNA	48262-1_{1..2731}	"gi|373938434|ref|NR_024176.2| Homo sapiens MAP kinase interacting serine/threonine kinase 1 (MKNK1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|373938434|ref|NR_024176.2| Homo sapiens MAP kinase interacting serine/threonine kinase 1 (MKNK1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NR_024176.2	NA	NA	NA	NA	NA	Unknown
CUST_37382_PI429285431	2.537261	A	1.8030655	A	1.6634695986981	0	lncRNA	38485-1_{1..902}	n345830|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1379|NULL|-1.4013500|-0.2808417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345830|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1379|NULL|-1.4013500|-0.2808417	chr4	185299500	185300401	-	NA	NA	NA	NA	IRF2	NA	chr4:185308876-185313483	inter
CUST_12492_PI429285431	4.196132	P	4.305538	P	0.926969644009442	0	lncRNA	14103-1_{1..294}	lnc-TAF5L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TAF5L-1:1	chr1	229926458	229926751	-	lnc-TAF5L-1	lnc-TAF5L-1:1	XLOC_001246	linc-TAF5L-3	NA	NA	NA	inter
CUST_50503_PI429285431	1.3005879	A	1.8835642	A	0.667585118371275	0	lncRNA	54199-1_{1..951}	hg19_lincRNAsTranscripts_TCONS_l2_00030322 range=chrX:106769938-106806430 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030322 range=chrX:106769938-106806430 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	106769938	106770888	+	NA	NA	NA	NA	FRMPD3	NA	chrX:106765680-106816430	inter
CUST_40530_PI429285431	0.9008094	A	1.3087815	A	0.753682029949074	0	lncRNA	41292-1_{1..3000}	n409638|NR_034022|lncRNA|Homosapiens||RefGeneNoncode|NR_034022||2.9666000|-0.3061889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n409638|NR_034022|lncRNA|Homosapiens||RefGeneNoncode|NR_034022||2.9666000|-0.3061889	chr7	  7115400	  7118399	-	NA	NA	NA	NA	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.61;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00"	NA	inter
CUST_34143_PI429285431	0.9051412	A	0.901243	A	1.00270568010254	0	lncRNA	35662-1_{1..1604}	n340983|S56770|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3449|NULL|7.8972700|-0.1378833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340983|S56770|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3449|NULL|7.8972700|-0.1378833	chr11	 17757537	 17759140	+	NA	NA	NA	NA	KCNC1	NA	chr11:17757495-17804177	inner
CUST_14185_PI429285431	0.9120318	A	0.9223537	A	0.992870937308592	0	lncRNA	15837-1_{1..764}	lnc-LAMA4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LAMA4-1:2	chr6	112717504	112718267	-	lnc-LAMA4-1	lnc-LAMA4-1:2	XLOC_005807	linc-LAMA4-1	NA	NA	NA	inter
CUST_49770_PI429285431	2.4164948	A	2.6075048	A	0.875992243130547	0	lncRNA	53532-1_{1..2611}	hg19_lincRNAsTranscripts_TCONS_l2_00026575 range=chr7:55807836-55811374 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026575 range=chr7:55807836-55811374 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 55807836	 55810446	-	NA	NA	NA	NA	LOC100128326	NA	chr7:55810070-55815779	inter
CUST_31375_PI429285431	0.9164442	A	0.92148054	A	0.996515161322679	0	lncRNA	33154-1_{1..2714}	n337842|BC012502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|225|NULL|-1.1480800|-0.4209189	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337842|BC012502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|225|NULL|-1.1480800|-0.4209189	chrX	119748595	119751308	-	NA	NA	NA	NA	MCTS1	NA	chrX:119738595-119755014	inner
CUST_1253_PI429285431	0.91019607	A	0.90836	A	1.00127347692779	0	lncRNA	1245-1_{1..754}	"transcript_id ""ENST00000432993.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432993.1"" | genecode_v17"	chr2	220970377	220971130	+	ENSG00000239498.1	ENST00000432993.1	AC114765.1	AC114765.1-001	NA	NA	NA	inter
CUST_2147_PI429285431	4.038017	P	4.510875	P	0.720535791032842	0	lncRNA	2138-1_{1..539}	"transcript_id ""ENST00000510758.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510758.1"" | genecode_v17"	chr5	 44500734	 44501272	-	ENSG00000249203.1	ENST00000510758.1	RP11-473L15.3	RP11-473L15.3-002	NA	NA	NA	inter
CUST_43870_PI429285431	6.4696035	P	6.530606	P	0.958597777368171	0	lncRNA	48590-1_{1..659}	"gi|363543318|ref|NR_045637.1| Homo sapiens BOLA3 antisense RNA 1 (head to head) (BOLA3-AS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|363543318|ref|NR_045637.1| Homo sapiens BOLA3 antisense RNA 1 (head to head) (BOLA3-AS1), transcript variant 3, non-coding RNA"	Chr2	 74375108	 74375766	+	100507171	NR_045637.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001025	0.9252673	A	0.91271573	A	1.00873804109257	0	lncRNA	ENST00000416401	NA	NA	NA	NA	XLOC_000446	NA	ENST00000416401	NA	NA	"BROAD Institute lincRNA (XLOC_000446), lincRNA [TCONS_00000327]"	chr1:163229924-163229983	hs|1q23.3	Agilent_HUMAN_G3V2	ENST00000416401	ENST00000416401	chr1	163229924	163229983	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17191_PI429285431	1.3143638	A	1.3192033	A	0.996651134221277	0	lncRNA	18902-1_{1..762}	lnc-GPR123-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR123-2:1	chr10	134827828	134828589	+	lnc-GPR123-2	lnc-GPR123-2:1	XLOC_008678	linc-GPR123-2	NA	NA	NA	inter
CUST_9157_PI429285431	7.855347	P	7.6830416	P	1.12685774455421	0	lncRNA	10676-1_{1..494}	lnc-FBN2-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FBN2-2:5	chr5	127418662	127419155	-	lnc-FBN2-2	lnc-FBN2-2:5	ENSG00000245937	CTC-228N24.3	SLC12A2	NA	chr5:127419483-127428720	inter
CUST_33514_PI429285431	4.0745106	P	4.3963075	P	0.800072753200965	0	lncRNA	35084-2_{3001..3663}	n340252|AL162033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2713|NULL|-1.2894300|-0.3879073	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340252|AL162033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2713|NULL|-1.2894300|-0.3879073	chr4	147929643	147930305	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10964_PI429285431	1.672727	A	1.7619636	A	0.940020027877168	0	lncRNA	12506-1_{1..398}	lnc-TNFRSF19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFRSF19-1:1	chr13	 24090213	 24090610	+	lnc-TNFRSF19-1	lnc-TNFRSF19-1:1	XLOC_010312	linc-TNFRSF19-2	NA	NA	NA	inter
CUST_21329_PI429285431	4.664658	P	4.9232774	P	0.835887446823006	0	lncRNA	22952-1_{1..1238}	lnc-C10orf116-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf116-1:4	chr10	 88784298	 88785535	+	lnc-C10orf116-1	lnc-C10orf116-1:4	ENSG00000151303.10	AGAP11	FAM25A	NA	chr10:88780046-88784487	inner
CUST_14929_PI429285431	1.3486186	A	1.1143408	A	1.17631773585992	0	lncRNA	16592-1_{1..1617}	lnc-NME4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NME4-1:2	chr16	   433290	   434906	+	lnc-NME4-1	lnc-NME4-1:2	XLOC_011618	linc-NME4	TMEM8A	NA	chr16:423290-431950	inter
CUST_4409_PI429285431	4.840199	P	6.2942715	P	0.36498966031509	0	lncRNA	4359-1_{1..314}	"transcript_id ""ENST00000552663.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552663.1"" | genecode_v17"	chr12	111807086	111807399	+	ENSG00000257595.2	ENST00000552663.1	RP3-473L9.4	RP3-473L9.4-002	FAM109A	NA	chr12:111798455-111806925	inter
CUST_9639_PI429285431	4.477603	P	4.6504574	P	0.887085827314127	0	lncRNA	11157-1_{1..2180}	lnc-CPN2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPN2-2:4	chr3	193922608	193924787	-	lnc-CPN2-2	lnc-CPN2-2:4	XLOC_003384	linc-ATP13A4-7	NA	NA	NA	inter
CUST_29606_PI429285431	0.91417867	A	0.91809803	A	0.997286993538279	0	lncRNA	31367-1_{1..294}	n333136|AF352781|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078245|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078245|0.5944250|-0.4559965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333136|AF352781|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078245|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078245|0.5944250|-0.4559965	chr4	 76956242	 76956535	-	NA	NA	NA	NA	ART3	NA	chr4:76946242-76967218	inner
CUST_51288_PI429285431	0.89748657	A	0.9373136	A	0.972771569572445	0	lncRNA	54894-1_{1..1906}	hg19_lincRNAsTranscripts_TCONS_l2_00008981 range=chr15:32790878-32828512 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008981 range=chr15:32790878-32828512 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 32790878	 32792783	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40632_PI429285431	13.200993	P	13.018952	P	1.13448772552353	0	lncRNA	41373-1_{1..2220}	n410127|NR_036565|lncRNA|Homosapiens||RefGeneNoncode|NR_036565||8.4545000|-0.2574446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410127|NR_036565|lncRNA|Homosapiens||RefGeneNoncode|NR_036565||8.4545000|-0.2574446	chr1	156278751	156280970	-	NA	NA	NA	NA	CCT3	NA	chr1:156278752-156308206	inner
CUST_35_PI429285431	6.6797476	P	6.815664	P	0.910091559723474	0	lncRNA	34-1_{1..1652}	"transcript_id ""ENST00000427006.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000427006.2"" | genecode_v17"	chr9	 41306133	 41307784	-	ENSG00000231757.4	ENST00000427006.2	FAM74A2	FAM74A2-001	FAM75A4	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20chr9:41321107-41321985"	NA	inter
CUST_18447_PI429285431	6.6349063	P	6.868651	P	0.850424638297566	0	lncRNA	20171-1_{1..2270}	lnc-A1BG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-A1BG-1:1	chr19	 58789889	 58792158	-	lnc-A1BG-1	lnc-A1BG-1:1	ENSG00000246051	AC020915.1	ZNF8	NA	chr19:58790318-58800174	inter
CUST_2451_PI429285431	2.8388236	A	2.8792958	A	0.972336645555008	0	lncRNA	2443-1_{1..561}	"transcript_id ""ENST00000503218.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503218.1"" | genecode_v17"	chr5	178882416	178882976	+	ENSG00000250674.1	ENST00000503218.1	RP11-798K23.1	RP11-798K23.1-001	NA	NA	NA	inter
CUST_33203_PI429285431	0.89409006	A	0.88885254	A	1.00363697000408	0	lncRNA	34794-1_{1..916}	n339898|BC043520|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2347|NULL|-1.0768000|-0.3828377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339898|BC043520|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2347|NULL|-1.0768000|-0.3828377	chr4	 32352659	 32353574	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28965_PI429285431	1.7203074	A	2.0050905	A	0.820865011354054	0	lncRNA	30687-1_{1..701}	n326397|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099377|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099377|-1.1640100|-0.2394227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326397|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099377|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099377|-1.1640100|-0.2394227	chr1	145452781	145453481	-	NA	NA	NA	NA	POLR3GL	NA	chr1:145456236-145466323	inner
CUST_18841_PI429285431	1.1506233	A	1.4253613	A	0.826600418930762	0	lncRNA	20536-1_{1..426}	lnc-LRP5L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRP5L-1:2	chr22	 25678577	 25679002	-	lnc-LRP5L-1	lnc-LRP5L-1:2	ENSG00000233577	RP3-462D8.2	NA	NA	NA	inter
CUST_6692_PI429285431	0.90431774	A	0.90535945	A	0.999278202271937	0	lncRNA	6641-1_{1..731}	"transcript_id ""ENST00000445606.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000445606.1"" | genecode_v17"	chr20	 38633126	 38633856	+	ENSG00000237767.1	ENST00000445606.1	RP11-101E14.2	RP11-101E14.2-002	NA	NA	NA	inter
CUST_49648_PI429285431	3.9120176	P	3.8293185	P	1.05899743868513	0	lncRNA	53431-1_{1..1787}	hg19_lincRNAsTranscripts_TCONS_l2_00025971 range=chr7:65124600-65183669 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025971 range=chr7:65124600-65183669 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 65124600	 65126386	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13437_PI429285431	1.6687952	A	1.1354264	A	1.44730481699469	0	lncRNA	15076-1_{1..372}	lnc-RP11-32K4.2.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-32K4.2.1-2:2	chr8	 64654688	 64655059	+	lnc-RP11-32K4.2.1-2	lnc-RP11-32K4.2.1-2:2	XLOC_006821	linc-BHLHE22-3	NA	NA	NA	inter
CUST_5036_PI429285431	0.89542264	A	1.0177209	A	0.918722928831708	0	lncRNA	4976-1_{1..943}	"transcript_id ""ENST00000557121.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557121.1"" | genecode_v17"	chr14	101587193	101588135	+	ENSG00000259004.1	ENST00000557121.1	RP11-8L8.2	RP11-8L8.2-001	NA	NA	NA	inter
CUST_21961_PI429285431	0.9120461	A	0.899142	A	1.00898456157175	0	lncRNA	23569-1_{1..714}	lnc-MYCT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYCT1-2:1	chr6	152867524	152868237	+	lnc-MYCT1-2	lnc-MYCT1-2:1	ENSG00000233464.1	RP11-133I21.2	SYNE1	NA	chr6:152857524-152878109	inner
LNCA_21_P0003970	0.91537774	A	0.9016007	A	1.00959525855361	0	lncRNA	ENST00000506299	NA	NA	NA	NA	XLOC_004291	NA	ENST00000506299	NA	NA	"BROAD Institute lincRNA (XLOC_004291), lincRNA [TCONS_00009351]"	chr5:10138082-10138141	hs|5p15.2	Agilent_HUMAN_G3V2	ENST00000506299	ENST00000506299	chr5	 10138082	 10138141	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29679_PI429285431	4.6176577	P	4.9435663	P	0.797795781484565	0	lncRNA	31441-1_{1..452}	n333332|AY255535|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085511|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085511|4.1251400|-0.0579518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333332|AY255535|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085511|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085511|4.1251400|-0.0579518	chr7	  1097329	  1097780	+	NA	NA	NA	NA	C7orf50	NA	chr7:1087329-1107781	inner
LNCA_21_P0012502	5.7415085	P	4.4991612	P	2.36583145858713	0	lncRNA	ENST00000474979	NA	NA	NA	NA	XLOC_l2_009905	NA	ENST00000474979	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009905), lincRNA [TCONS_l2_00019900]"	chr3:141439853-141439912	hs|3q23	Agilent_HUMAN_G3V2	ENST00000474979	ENST00000474979	chr3	141439853	141439912	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3556_PI429285431	6.8425775	P	6.9984236	P	0.89760579797387	0	lncRNA	3526-1_{1..469}	"transcript_id ""ENST00000453213.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453213.1"" | genecode_v17"	chr9	132260618	132261086	+	ENSG00000204054.6	ENST00000453213.1	RP11-492E3.1	RP11-492E3.1-004	NA	NA	NA	inter
CUST_12180_PI429285431	1.1468043	A	0.91709334	A	1.17259999849877	0	lncRNA	13780-1_{1..326}	lnc-HES1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HES1-2:1	chr3	193826644	193826969	+	lnc-HES1-2	lnc-HES1-2:1	XLOC_002975	linc-HES1-1	NA	NA	NA	inter
CUST_48424_PI429285431	0.9103272	A	0.9139704	A	0.997477912013432	0	lncRNA	52276-1_{1..1471}	hg19_lincRNAsTranscripts_TCONS_l2_00000590 range=chr1:149238888-149250563 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000590 range=chr1:149238888-149250563 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	149238888	149240358	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27411_PI429285431	5.5910635	P	5.58723	P	1.00266071314766	0	lncRNA	28976-1_{1..716}	n324579|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039944|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039944|-1.3485200|-0.2827683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324579|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039944|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039944|-1.3485200|-0.2827683	chr6	 17218704	 17219419	+	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80"	NA	inter
CUST_1778_PI429285431	3.473726	P	3.5886123	P	0.923455086127508	0	lncRNA	1764-1_{1..427}	"transcript_id ""ENST00000509824.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509824.1"" | genecode_v17"	chr4	 59390680	 59391106	-	ENSG00000250340.1	ENST00000509824.1	RP11-577G20.1	RP11-577G20.1-001	NA	NA	NA	inter
CUST_48054_PI429285431	0.8982436	A	0.8953937	A	1.00197735253813	0	lncRNA	51931-2_{3001..3133}	"gi|410170005|ref|XR_172441.1| PREDICTED: Homo sapiens chromosome 1 open reading frame 81 (C1orf81), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170005|ref|XR_172441.1| PREDICTED: Homo sapiens chromosome 1 open reading frame 81 (C1orf81), misc_RNA"	NA	NA	NA	NA	NA	XR_172441.1	NA	NA	NA	NA	NA	Unknown
CUST_28593_PI429285431	1.9558271	A	1.8341935	A	1.087966096781	0	lncRNA	30273-1_{1..417}	n325954|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048311|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048311|-0.9646700|-0.3157280	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325954|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048311|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048311|-0.9646700|-0.3157280	chr10	 69663015	 69663431	-	NA	NA	NA	NA	SIRT1	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr10:69653015-69675196"	NA	inner
CUST_3941_PI429285431	0.9145603	A	0.91567826	A	0.999225389343873	0	lncRNA	3911-1_{1..605}	"transcript_id ""ENST00000528480.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000528480.1"" | genecode_v17"	chr11	 46138129	 46138733	+	ENSG00000254653.1	ENST00000528480.1	RP11-702F3.1	RP11-702F3.1-001	PHF21A	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-23.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10chr11:46128129-46142985"	NA	inner
CUST_36450_PI429285431	5.215861	P	5.5389924	P	0.799333024153178	0	lncRNA	37662-2_{3001..4822}	n344962|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_511|NULL|-1.2973400|-0.3427392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344962|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_511|NULL|-1.2973400|-0.3427392	chr7	 96269551	 96271372	+	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
LNCA_21_P0008517	2.805349	A	3.00362	A	0.871594501332523	0	lncRNA	XR_110221	XR_110221	XR_110221	NA	NA	LOC100506476	uncharacterized LOC100506476	NA	THC2640786	NA	"PREDICTED: Homo sapiens hypothetical LOC100506476 (LOC100506476), miscRNA [XR_110221]"	chr14:74269958-74270017	hs|14q24.3	Agilent_HUMAN_G3V2	XR_110221	XR_110221	chr14	 74269958	 74270017	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31925_PI429285431	4.623576	P	4.4519887	P	1.12629699181821	0	lncRNA	33653-1_{1..2357}	n338479|AK023040|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|876|NULL|0.8241700|-0.2626308	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n338479|AK023040|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|876|NULL|0.8241700|-0.2626308	chr19	 23437859	 23440215	-	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-27.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40"	NA	inter
CUST_12883_PI429285431	8.286958	P	8.76408	P	0.718409334167919	0	lncRNA	14511-1_{1..477}	lnc-TAOK3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TAOK3-1:2	chr12	118573662	118574138	-	lnc-TAOK3-1	lnc-TAOK3-1:2	XLOC_010212	linc-VSIG10	PEBP1	NA	chr12:118573870-118583390	inter
CUST_15797_PI429285431	1.4106641	A	1.2382404	A	1.12695014990191	0	lncRNA	17488-1_{1..829}	lnc-ZNF727-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF727-2:1	chr7	 63500318	 63501146	+	lnc-ZNF727-2	lnc-ZNF727-2:1	XLOC_006122	linc-ZNF727-1	ZNF727	NA	chr7:63505821-63510337	inter
CUST_48566_PI429285431	1.7893327	A	1.5442309	A	1.18517639686194	0	lncRNA	52414-1_{1..2984}	hg19_lincRNAsTranscripts_TCONS_l2_00013420 range=chr2:739751-749406 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013420 range=chr2:739751-749406 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	   739751	   742734	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3886_PI429285431	0.928921	A	0.9300358	A	0.999227577994696	0	lncRNA	3855-1_{1..348}	"transcript_id ""ENST00000531157.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531157.1"" | genecode_v17"	chr11	 25945735	 25946082	+	ENSG00000254754.1	ENST00000531157.1	RP11-20J1.1	RP11-20J1.1-001	NA	NA	NA	inter
CUST_42934_PI429285431	6.1818357	P	6.6043363	P	0.746130247380109	0	lncRNA	46049-1_{1..106}	ENST00000517251 ncrna:snoRNA chromosome:GRCh37:1:171737210:171737315:1 gene:ENSG00000253060 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517251 ncrna:snoRNA chromosome:GRCh37:1:171737210:171737315:1 gene:ENSG00000253060 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	171737210	171737315	+	ENSG00000253060	ENST00000517251	NA	NA	NA	NA	NA	inter
CUST_2835_PI429285431	0.91563797	A	1.0570256	A	0.906646694162069	0	lncRNA	2819-1_{1..625}	"transcript_id ""ENST00000418679.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418679.1"" | genecode_v17"	chr7	 53994369	 53994993	-	ENSG00000238131.1	ENST00000418679.1	RP11-806J6.1	RP11-806J6.1-001	NA	NA	NA	inter
CUST_34609_PI429285431	3.2766235	P	3.1969342	P	1.05679042479054	0	lncRNA	36064-1_{1..2132}	n341493|AK056102|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3963|NULL|-0.8646420|-0.2171884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341493|AK056102|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3963|NULL|-0.8646420|-0.2171884	chr8	 48171253	 48173384	-	NA	NA	NA	NA	KIAA0146	NA	chr8:48173489-48183385	inter
LNCA_21_P0014729	4.7028503	P	4.997745	P	0.815131825397636	0	lncRNA	XR_113027	XR_113027	XR_113027	NA	Hs.573343	LOC100505717	uncharacterized LOC100505717	NA	THC2496437	NA	"PREDICTED: Homo sapiens hypothetical LOC100505717 (LOC100505717), miscRNA [XR_113027]"	chr7:75122521-75122462	hs|7q11.23	Agilent_HUMAN_G3V2	XR_113027	XR_113027	chr7	 75122462	 75122521	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010027	0.92799914	A	0.9158077	A	1.00848626820706	0	lncRNA	TCONS_00028351	NA	NA	NA	NA	XLOC_013702	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013702), lincRNA [TCONS_00028351]"	chr20:24860997-24860842	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028351	TCONS_00028351	chr20	 24860842	 24860997	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44883_PI429285431	6.6801906	P	5.42957	P	2.37943756574003	0	lncRNA	49407-1_{1..3000}	"gi|289063410|ref|NR_033328.1| Homo sapiens kelch-like 7 (Drosophila) (KLHL7), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|289063410|ref|NR_033328.1| Homo sapiens kelch-like 7 (Drosophila) (KLHL7), transcript variant 4, non-coding RNA"	Chr7	 23145353	 23148352	+	55975	NR_033328.1	NA	NA	NA	NA	NA	inter
CUST_42625_PI429285431	5.2797227	P	5.8264704	P	0.684561612920895	0	lncRNA	45492-1_{1..141}	ENST00000411095 ncrna:snoRNA chromosome:GRCh37:10:27077946:27078086:1 gene:ENSG00000223027 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000411095 ncrna:snoRNA chromosome:GRCh37:10:27077946:27078086:1 gene:ENSG00000223027 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	 27077946	 27078086	+	ENSG00000223027	ENST00000411095	NA	NA	ABI1	NA	chr10:27067946-27088086	inner
CUST_5963_PI429285431	8.38223	P	8.425646	P	0.970354628418337	0	lncRNA	5892-1_{1..708}	"transcript_id ""ENST00000321800.7"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000321800.7"" | genecode_v17"	chr17	 71746469	 71747176	-	ENSG00000177338.9	ENST00000321800.7	LINC00469	LINC00469-001	NA	NA	NA	inter
CUST_44945_PI429285431	11.81483	P	10.675796	P	2.20233509802471	0	lncRNA	49457-1_{1..2471}	"gi|224994167|ref|NR_027342.1| Homo sapiens FK506 binding protein 9-like (FKBP9L), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224994167|ref|NR_027342.1| Homo sapiens FK506 binding protein 9-like (FKBP9L), transcript variant 3, non-coding RNA"	Chr7	 55748767	 55751237	-	360132	NR_027342.1	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50"	NA	inter
CUST_38704_PI429285431	0.9556388	A	0.9739623	A	0.987379433456568	0	lncRNA	39699-1_{1..2070}	n384115|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zzh.1||1.7694000|-0.1691565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384115|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zzh.1||1.7694000|-0.1691565	chr22	 24385937	 24388006	-	NA	NA	NA	NA	GSTT1	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40chr22:24376139-24384284"	NA	inter
CUST_17647_PI429285431	4.4392962	P	4.878619	P	0.737480700314473	0	lncRNA	19376-1_{1..906}	lnc-GPA33-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPA33-1:3	chr1	167164926	167165831	-	lnc-GPA33-1	lnc-GPA33-1:3	XLOC_001080	linc-GPA33	POU2F1	NA	chr1:167154926-167174985	inter
CUST_29037_PI429285431	0.9157366	A	0.91590273	A	0.999884854088693	0	lncRNA	30766-1_{1..212}	n326527|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029383|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029383|-1.3919000|-0.4150587	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326527|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029383|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029383|-1.3919000|-0.4150587	chr1	 94486051	 94486262	+	NA	NA	NA	NA	ABCA4	NA	chr1:94476051-94497636	inner
CUST_2828_PI429285431	0.90609294	A	1.0102795	A	0.930329345744992	0	lncRNA	2812-1_{1..808}	"transcript_id ""ENST00000457592.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457592.1"" | genecode_v17"	chr7	 50241835	 50242642	-	ENSG00000231681.1	ENST00000457592.1	AC020743.3	AC020743.3-001	NA	NA	NA	inter
CUST_22397_PI429285431	1.003466	A	1.606845	A	0.658210524579598	0	lncRNA	23986-2_{3001..5195}	lnc-ZNF821-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF821-2:1	chr16	 72036583	 72038777	-	lnc-ZNF821-2	lnc-ZNF821-2:1	ENSG00000187008.2	PKD1L3	DHODH	NA	chr16:72042643-72043877	inner
CUST_22465_PI429285431	2.3550894	A	2.9460814	A	0.66388626054813	0	lncRNA	24052-2_{3001..4811}	lnc-EIF2AK4-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF2AK4-1:6	chr15	 40216271	 40218081	+	lnc-EIF2AK4-1	lnc-EIF2AK4-1:6	ENSG00000246863.2	RP11-325N19.3	GPR176	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90chr15:40203271-40213093"	NA	inter
CUST_31104_PI429285431	7.1819606	P	7.142137	P	1.0279881256681	0	lncRNA	32897-1_{1..319}	n337392|DQ656026|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393139|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393139|2.0964700|-0.1235655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337392|DQ656026|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393139|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393139|2.0964700|-0.1235655	chr19	 54673349	 54673667	-	NA	NA	NA	NA	MBOAT7	NA	chr19:54677106-54686466	inner
CUST_13667_PI429285431	4.4518986	P	4.429921	P	1.01535033591326	0	lncRNA	15304-2_{3001..4820}	lnc-TPM4-2:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPM4-2:14	chr19	 16138241	 16140060	+	lnc-TPM4-2	lnc-TPM4-2:14	XLOC_012983	linc-TPM4-2	NA	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10"	NA	inter
CUST_14659_PI429285431	12.218868	P	11.887696	P	1.25803494747652	0	lncRNA	16328-1_{1..315}	lnc-STX17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-STX17-1:1	chr9	102657159	102657473	+	lnc-STX17-1	lnc-STX17-1:1	XLOC_007489	linc-STX17	NA	NA	NA	inter
CUST_49333_PI429285431	2.1215465	A	1.7728255	A	1.27343118512174	0	lncRNA	53146-1_{1..909}	hg19_lincRNAsTranscripts_TCONS_l2_00022934 range=chr5:67725581-67729380 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022934 range=chr5:67725581-67729380 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 67725581	 67726489	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14160_PI429285431	2.3395133	A	1.7794924	A	1.47429057485383	0	lncRNA	15811-1_{1..612}	lnc-LRRC61-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC61-2:1	chr7	150054388	150054999	+	lnc-LRRC61-2	lnc-LRRC61-2:1	XLOC_006291	linc-REPIN1	NA	NA	NA	inter
CUST_48289_PI429285431	0.92897135	A	0.9137821	A	1.01058400428577	0	lncRNA	52147-2_{3001..3205}	hg19_lincRNAsTranscripts_TCONS_l2_00000114 range=chr1:16971255-16977291 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000114 range=chr1:16971255-16977291 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16974255	 16974459	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26815_PI429285431	0.9476783	A	0.9410994	A	1.00457055927458	0	lncRNA	28328-1_{1..713}	n323884|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056296|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056296|-0.9878210|-0.2956590	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323884|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056296|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056296|-0.9878210|-0.2956590	chrX	 42200773	 42201485	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51339_PI429285431	0.9061718	A	0.897203	A	1.00623606220816	0	lncRNA	54939-1_{1..833}	hg19_lincRNAsTranscripts_TCONS_l2_00009514 range=chr15:71088936-71095023 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009514 range=chr15:71088936-71095023 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 71088936	 71089768	-	NA	NA	NA	NA	LARP6	NA	chr15:71088859-71105023	inter
CUST_37621_PI429285431	1.036992	A	0.9080434	A	1.09349649795427	0	lncRNA	38718-1_{1..2252}	n346099|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1649|NULL|-1.5606000|-0.2237454	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346099|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1649|NULL|-1.5606000|-0.2237454	chr15	 22482242	 22484493	-	NA	NA	NA	NA	LOC642131	NA	chr15:22472242-22473353	inter
CUST_48220_PI429285431	7.3021555	P	7.4438553	P	0.90645053539535	0	lncRNA	52083-1_{1..482}	hg19_lincRNAsTranscripts_TCONS_l2_00001487 range=chr1:142785297-142890997 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001487 range=chr1:142785297-142890997 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	142785297	142785778	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20474_PI429285431	1.099176	A	0.9011619	A	1.14711823538835	0	lncRNA	22117-1_{1..477}	lnc-ALDH7A1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALDH7A1-1:3	chr5	125803133	125803609	-	lnc-ALDH7A1-1	lnc-ALDH7A1-1:3	ENSG00000250602.1	RP11-517I3.1	GRAMD3	NA	chr5:125793133-125813323	inner
CUST_43238_PI429285431	5.0982747	P	5.1670637	P	0.95343797926227	0	lncRNA	48055-1_{1..483}	ENST00000596631 havana:sense_intronic chromosome:GRCh37:19:54945363:54945845:1 gene:ENSG00000268496 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000596631 havana:sense_intronic chromosome:GRCh37:19:54945363:54945845:1 gene:ENSG00000268496 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 54945363	 54945845	+	ENSG00000268496	ENST00000596631	NA	NA	TTYH1	NA	chr19:54935363-54947899	inner
CUST_43540_PI429285431	1.3981522	A	1.0770464	A	1.24928773877508	0	lncRNA	48322-2_{3001..6000}	"gi|388490238|ref|NR_049773.1| Homo sapiens KIAA1324 (KIAA1324), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388490238|ref|NR_049773.1| Homo sapiens KIAA1324 (KIAA1324), transcript variant 4, non-coding RNA"	Chr1	109659585	109662584	+	57535	NR_049773.1	NA	NA	NA	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	inter
CUST_33127_PI429285431	1.9868938	A	0.9079883	A	2.1124328767305	0	lncRNA	34724-1_{1..1048}	n339817|CR618310|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2264|NULL|-1.0598300|-0.2825896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339817|CR618310|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2264|NULL|-1.0598300|-0.2825896	chr4	  4822131	  4823178	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41928_PI429285431	0.9090376	A	0.9147245	A	0.996065900225671	0	lncRNA	43676-1_{1..70}	ENST00000390787 ncrna:miRNA chromosome:GRCh37:1:52302013:52302082:-1 gene:ENSG00000212076 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390787 ncrna:miRNA chromosome:GRCh37:1:52302013:52302082:-1 gene:ENSG00000212076 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 52302013	 52302082	-	ENSG00000212076	ENST00000390787	NA	NA	NRD1	NA	chr1:52292013-52312082	inner
CUST_25966_PI429285431	1.8322927	A	1.3473443	A	1.39953580835016	0	lncRNA	27486-1_{1..474}	lnc-A2LD1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-A2LD1-1:3	chr13	101132515	101132988	-	lnc-A2LD1-1	lnc-A2LD1-1:3	ENSG00000234650.1	PCCA-AS1	PCCA	NA	chr13:101122515-101142539	inner
CUST_2248_PI429285431	0.9114899	A	0.9139327	A	0.998308212755466	0	lncRNA	2240-1_{1..253}	"transcript_id ""ENST00000514662.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514662.1"" | genecode_v17"	chr5	 88762354	 88762606	-	ENSG00000250831.1	ENST00000514662.1	CTD-2232E5.2	CTD-2232E5.2-001	NA	NA	NA	inter
LNCA_21_P0013835	1.0260211	A	0.9247291	A	1.07273371505319	0	lncRNA	TCONS_l2_00030617	NA	NA	NA	NA	XLOC_l2_015830	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015830), lincRNA [TCONS_l2_00030617]"	chrX:135897160-135897101	hs|Xq26.3	Agilent_HUMAN_G3V2	TCONS_l2_00030617	TCONS_l2_00030617	chrX	135897101	135897160	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23771_PI429285431	0.9266038	A	1.9676504	A	0.485974796431162	0	lncRNA	25334-1_{1..589}	lnc-CCT4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCT4-1:2	chr2	 62373943	 62374531	-	lnc-CCT4-1	lnc-CCT4-1:2	ENSG00000229839.2	AC018462.2	NA	"hg19_refFlat_RPSA:range=chr3:39449145-394538595'pad=0,hg19_refFlat_RPSA:range=chr3:39449145-394538595'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20"	NA	inter
CUST_2161_PI429285431	0.9363746	A	0.9216961	A	1.01022629568462	0	lncRNA	2153-1_{1..591}	"transcript_id ""ENST00000512349.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512349.1"" | genecode_v17"	chr5	 54350256	 54350846	+	ENSG00000251376.1	ENST00000512349.1	CTD-2313F11.2	CTD-2313F11.2-001	NA	NA	NA	inter
CUST_31958_PI429285431	1.1549897	A	0.9006784	A	1.19276621574382	0	lncRNA	33681-1_{1..771}	n338515|BC015376|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|912|NULL|-1.0887000|-0.3102924	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338515|BC015376|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|912|NULL|-1.0887000|-0.3102924	chr1	211756356	211757126	-	NA	NA	NA	NA	SLC30A1	NA	chr1:211748381-211752099	inter
LNCA_21_P0003039	0.92877775	A	0.9250424	A	1.00259250205751	0	lncRNA	TCONS_00006256	NA	NA	NA	NA	XLOC_002858	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002858), lincRNA [TCONS_00006256]"	chr3:147539332-147541119	hs|3q24	Agilent_HUMAN_G3V2	TCONS_00006256	TCONS_00006256	chr3	147539332	147541119	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23541_PI429285431	0.8957466	A	1.2344351	A	0.790759835356924	0	lncRNA	25108-1_{1..489}	lnc-BTBD10-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BTBD10-5:1	chr11	 12844954	 12845442	-	lnc-BTBD10-5	lnc-BTBD10-5:1	ENSG00000254688.1	RP11-47J17.3	TEAD1	NA	chr11:12834954-12855214	inner
CUST_24899_PI429285431	8.543264	P	9.178102	P	0.644013126827944	0	lncRNA	26440-1_{1..470}	lnc-PTPRCAP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPRCAP-1:1	chr11	 67202528	 67202997	-	lnc-PTPRCAP-1	lnc-PTPRCAP-1:1	ENSG00000255949.1	AP003419.16	CARNS1	"hg19_refFlat_RPS6KB2:range=chr11:67196017-672026405'pad=0,hg19_refFlat_RPS6KB2:range=chr11:67196017-672026405'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.30chr11:67192528-67193078"	NA	inner
LNCA_21_P0010022	10.287197	P	10.303681	P	0.988639188865819	0	lncRNA	XR_109654	XR_109654	XR_109654	NA	NA	LOC100505683	uncharacterized LOC100505683	ENST00000442440	THC2670565	NA	"PREDICTED: Homo sapiens hypothetical LOC100505683 (LOC100505683), miscRNA [XR_109654]"	chr20:23337720-23337580	hs|20p11.21	Agilent_HUMAN_G3V2	XR_109654	XR_109654	chr20	 23337580	 23337720	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38901_PI429285431	2.781664	A	2.618112	A	1.12004135381553	0	lncRNA	39889-1_{1..1342}	n384940|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003oye.2||3.1603600|-0.3415976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n384940|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003oye.2||3.1603600|-0.3415976	chr6	 46459788	 46461129	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_18122_PI429285431	3.221153	P	2.928494	P	1.2248957774144	0	lncRNA	19857-1_{1..542}	lnc-FOXA2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXA2-6:1	chr20	 22447794	 22448335	-	lnc-FOXA2-6	lnc-FOXA2-6:1	XLOC_013681	linc-NKX2-2-4	NA	NA	NA	inter
CUST_22101_PI429285431	0.90889007	A	1.1359053	A	0.854400721248506	0	lncRNA	23706-1_{1..738}	lnc-MIPOL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MIPOL1-1:1	chr14	 38047909	 38048646	+	lnc-MIPOL1-1	lnc-MIPOL1-1:1	ENSG00000258414.1	RP11-356O9.1	NA	NA	NA	inter
CUST_4560_PI429285431	5.861307	P	6.463973	P	0.658535901792483	0	lncRNA	4509-1_{1..264}	"transcript_id ""ENST00000414345.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414345.2"" | genecode_v17"	chr13	 23743974	 23744237	-	ENSG00000229483.2	ENST00000414345.2	LINC00362	LINC00362-001	NA	NA	NA	inter
CUST_16762_PI429285431	4.679717	P	3.770702	P	1.87776301802154	0	lncRNA	18470-1_{1..293}	lnc-MX1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MX1-3:2	chr21	 43136535	 43136827	+	lnc-MX1-3	lnc-MX1-3:2	XLOC_013949	linc-UMODL1-3	NA	NA	NA	inter
CUST_31693_PI429285431	5.0478306	P	5.8571887	P	0.570635695070416	0	lncRNA	33438-1_{1..3000}	n338219|D87461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|611|NULL|2.8992100|-0.2654108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338219|D87461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|611|NULL|2.8992100|-0.2654108	chr14	 23776035	 23779034	+	NA	NA	NA	NA	PABPN1	NA	chr14:23789397-23790958	inner
CUST_51912_PI429285431	4.046317	P	4.5791054	P	0.691217476658078	0	lncRNA	55455-1_{1..1373}	hg19_lincRNAsTranscripts_TCONS_l2_00016541 range=chr20:25785018-25831353 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016541 range=chr20:25785018-25831353 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	 25785018	 25786390	-	NA	NA	NA	NA	LOC100289375	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30chr20:25825857-25841353"	NA	inter
CUST_29171_PI429285431	4.9717298	P	5.155137	P	0.880620784242286	0	lncRNA	30915-1_{1..376}	n326683|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007960|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007960|-0.9219730|-0.2699981	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326683|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007960|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007960|-0.9219730|-0.2699981	chr1	 20611383	 20611758	-	NA	NA	NA	NA	VWA5B1	NA	chr1:20617412-20622333	inter
CUST_3960_PI429285431	3.591986	P	3.732218	A	0.907373228762946	0	lncRNA	3930-1_{1..452}	"transcript_id ""ENST00000536495.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536495.1"" | genecode_v17"	chr11	 60823209	 60823660	+	ENSG00000256733.1	ENST00000536495.1	RP11-881M11.8	RP11-881M11.8-001	NA	NA	NA	inter
CUST_52037_PI429285431	1.8787432	A	0.8969747	A	1.97488480039422	0	lncRNA	55567-1_{1..307}	hg19_lincRNAsTranscripts_TCONS_l2_00017174 range=chr21:24775997-24786569 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017174 range=chr21:24775997-24786569 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 24775997	 24776303	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2137_PI429285431	1.7898952	A	1.9419326	A	0.899978598711802	0	lncRNA	2128-1_{1..540}	"transcript_id ""ENST00000513673.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513673.1"" | genecode_v17"	chr5	 37899465	 37900004	-	ENSG00000248539.1	ENST00000513673.1	CTD-2194L12.2	CTD-2194L12.2-001	NA	NA	NA	inter
CUST_15747_PI429285431	4.6019373	P	5.4906387	P	0.540100054881517	0	lncRNA	17434-1_{1..535}	lnc-USP25-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP25-2:7	chr21	 17885382	 17885916	+	lnc-USP25-2	lnc-USP25-2:7	XLOC_013868	linc-CXADR-3	NA	NA	NA	inter
CUST_18505_PI429285431	0.92225605	A	0.915219	A	1.00488962676646	0	lncRNA	20220-1_{1..1933}	lnc-TACR2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TACR2-2:1	chr10	 70992127	 70994059	-	lnc-TACR2-2	lnc-TACR2-2:1	ENSG00000229261	RP11-227H15.4	HKDC1	"hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.42chr10:70982127-71002246"	NA	inner
CUST_38811_PI429285431	6.4858637	P	6.6477876	P	0.893832309427275	0	lncRNA	39804-1_{1..1468}	n384573|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jbb.1||-0.9102790|-0.1947790	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384573|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jbb.1||-0.9102790|-0.1947790	chr5	   468366	   469833	+	NA	NA	NA	NA	SLC9A3	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr5:473334-482052"	NA	inter
CUST_36096_PI429285431	0.9257103	A	0.90700394	A	1.0130506871546	0	lncRNA	37393-5_{12001..12222}	n344678|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_227|NULL|-1.3041500|-0.3744234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n344678|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_227|NULL|-1.3041500|-0.3744234	chr6	 72095204	 72095425	-	NA	NA	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-22.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.50"	NA	inter
LNCA_21_P0007007	2.170142	A	1.7869625	A	1.30421299523927	0	lncRNA	TCONS_00018560	NA	NA	NA	NA	XLOC_008882	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008882), lincRNA [TCONS_00018560]"	chr10:87339854-87339795	hs|10q23.1	Agilent_HUMAN_G3V2	TCONS_00018560	TCONS_00018560	chr10	 87339795	 87339854	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33750_PI429285431	6.158344	P	4.4610195	P	3.24298983108722	0	lncRNA	35306-1_{1..1309}	n340528|AK026295|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2990|NULL|-1.2273400|-0.4124490	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340528|AK026295|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2990|NULL|-1.2273400|-0.4124490	chr5	 79434702	 79436010	-	NA	NA	NA	NA	SERINC5	NA	chr5:79424702-79445990	inner
CUST_45832_PI429285431	11.461323	P	11.727652	P	0.831432472384693	0	lncRNA	50166-1_{1..1964}	"gi|320118909|ref|NR_037718.1| Homo sapiens EGF containing fibulin-like extracellular matrix protein 2 (EFEMP2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|320118909|ref|NR_037718.1| Homo sapiens EGF containing fibulin-like extracellular matrix protein 2 (EFEMP2), transcript variant 2, non-coding RNA"	Chr11	 65633912	 65635875	-	30008	NR_037718.1	NA	NA	NA	NA	NA	inter
CUST_9693_PI429285431	1.0538658	A	1.260043	A	0.866831087857694	0	lncRNA	11208-1_{1..277}	lnc-CCDC85A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC85A-1:1	chr2	 56816620	 56816896	+	lnc-CCDC85A-1	lnc-CCDC85A-1:1	XLOC_001482	linc-VRK2-3	NA	NA	NA	inter
CUST_29934_PI429285431	2.366963	A	2.153648	A	1.15934905812391	0	lncRNA	31698-1_{1..404}	n334122|M61743|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195982|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195982|1.7738100|-0.1723575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334122|M61743|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195982|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195982|1.7738100|-0.1723575	chr1	 41979232	 41979635	-	NA	NA	NA	NA	HIVEP3	NA	chr1:41975684-42000535	inner
CUST_46914_PI429285431	2.296813	A	1.7684865	A	1.44225523499515	0	lncRNA	51030-1_{1..3000}	"gi|241896901|ref|NR_027751.1| Homo sapiens family with sequence similarity 20, member A (FAM20A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|241896901|ref|NR_027751.1| Homo sapiens family with sequence similarity 20, member A (FAM20A), transcript variant 2, non-coding RNA"	Chr17	 66531257	 66534256	-	54757	NR_027751.1	NA	NA	NA	NA	NA	inter
CUST_51523_PI429285431	4.2901807	P	4.4030075	P	0.924774293462728	0	lncRNA	55096-1_{1..460}	hg19_lincRNAsTranscripts_TCONS_l2_00010691 range=chr17:29343978-29372546 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010691 range=chr17:29343978-29372546 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 29343978	 29344437	+	NA	NA	NA	NA	LOC646021	NA	chr17:29333978-29359716	inter
CUST_5374_PI429285431	2.943653	A	4.417822	P	0.359940663035361	0	lncRNA	5311-1_{1..547}	"transcript_id ""ENST00000595428.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595428.1"" | genecode_v17"	chr16	   235747	   236293	-	ENSG00000268836.1	ENST00000595428.1	LA16c-OS12.2	LA16c-OS12.2-001	LUC7L	NA	chr16:238970-246293	inter
CUST_309_PI429201921	1.0716329	A	0.91566515	A	1.11416874441666	0	lncRNA	210-3_{6001..7257}	TC13001298.hg.1	TCONS_l2_00007471-XLOC_l2_003859 // Broad TUCP // linc-ARHGEF7-2 chr13:+:111635653-111642911 // chr13 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr13:+:111635653-111642911	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00007471-XLOC_l2_003859	linc-ARHGEF7-2	chr13	111635653	111642911	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41563_PI429285431	3.9027543	P	4.2191477	P	0.803074981118223	0	lncRNA	42874-1_{1..80}	ENST00000408770 ncrna:miRNA chromosome:GRCh37:6:33967749:33967828:-1 gene:ENSG00000221697 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408770 ncrna:miRNA chromosome:GRCh37:6:33967749:33967828:-1 gene:ENSG00000221697 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 33967749	 33967828	-	ENSG00000221697	ENST00000408770	NA	NA	NA	NA	NA	inter
CUST_25105_PI429285431	7.11642	P	7.131817	P	0.989384360726728	0	lncRNA	26642-1_{1..2923}	lnc-DOCK8-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DOCK8-4:1	chr9	    30758	    33680	+	lnc-DOCK8-4	lnc-DOCK8-4:1	ENSG00000227518.1	MIR1302-10	WASH1	NA	chr9:20758-29739	inter
LNCA_21_P0012500	0.91744167	A	0.90314895	A	1.00995619494451	0	lncRNA	ENST00000468859	XR_108477	XR_108477	NA	Hs.506711	XLOC_l2_009883	NA	ENST00000468859	THC2572859	NA	"PREDICTED: Homo sapiens hypothetical LOC100131679 (LOC100131679), miscRNA [XR_108477]"	chr3:125605883-125605824	hs|3q21.2	Agilent_HUMAN_G3V2	ENST00000468859	ENST00000468859	chr3	125605824	125605883	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18434_PI429285431	1.4699323	A	1.3563437	A	1.08191608053159	0	lncRNA	20156-1_{1..219}	lnc-SDSL-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SDSL-6:3	chr12	114551146	114551364	+	lnc-SDSL-6	lnc-SDSL-6:3	ENSG00000257997	RP11-100F15.2	NA	NA	NA	inter
CUST_34420_PI429285431	5.8658776	P	6.1386147	P	0.827747641458604	0	lncRNA	35900-1_{1..1800}	n341293|AK127937|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3762|NULL|-0.9811970|-0.2115940	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341293|AK127937|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3762|NULL|-0.9811970|-0.2115940	chr7	105573257	105575056	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46790_PI429285431	3.5392823	P	3.8294582	P	0.817802342264457	0	lncRNA	50936-1_{1..1379}	"gi|338753381|ref|NR_040012.1| Homo sapiens SPAG5 antisense RNA 1 (SPAG5-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338753381|ref|NR_040012.1| Homo sapiens SPAG5 antisense RNA 1 (SPAG5-AS1), non-coding RNA"	Chr17	 26926151	 26927529	+	100506436	NR_040012.1	NA	NA	NA	"hg19_refFlat_KIAA0100:range=chr17:26942082-269720745'pad=0,hg19_refFlat_KIAA0100:range=chr17:26942082-269720745'pad=0 3'pad=0 strand=- repeatMasking=none,-97.60"	NA	inter
CUST_38051_PI429285431	0.98554933	A	1.265283	A	0.823743071053738	0	lncRNA	39129-2_{3001..5659}	n377623|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030010||0.5272400|-0.2669228	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377623|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030010||0.5272400|-0.2669228	chr6	  2359965	  2362623	+	NA	NA	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20"	NA	inter
CUST_24495_PI429285431	3.6835165	P	4.046207	P	0.77771285999049	0	lncRNA	26047-1_{1..538}	lnc-THTPA-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THTPA-2:2	chr14	 23983445	 23983982	+	lnc-THTPA-2	lnc-THTPA-2:2	ENSG00000157306.10	RP11-66N24.4	ZFHX2	NA	chr14:23990064-23993762	inter
CUST_23374_PI429285431	5.3932686	P	5.568909	P	0.885374421722757	0	lncRNA	24942-1_{1..2680}	lnc-NEK3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-NEK3-1:1	chr13	 52908062	 52910741	-	lnc-NEK3-1	lnc-NEK3-1:1	ENSG00000217576.4	RP11-64P12.8	LOC100652836	NA	chr13:52898062-52908484	inter
CUST_43106_PI429285431	0.9058856	A	0.89768946	A	1.00569729956253	0	lncRNA	47781-1_{1..115}	ENST00000516542 ncrna:snRNA chromosome:GRCh37:11:131255144:131255258:1 gene:ENSG00000252351 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516542 ncrna:snRNA chromosome:GRCh37:11:131255144:131255258:1 gene:ENSG00000252351 gene_biotype:snRNA transcript_biotype:snRNA	chr11	131255144	131255258	+	ENSG00000252351	ENST00000516542	NA	NA	NTM	NA	chr11:131245144-131265258	inner
CUST_38363_PI429285431	14.83749	P	14.841112	P	0.997492569779978	0	lncRNA	39405-1_{1..443}	n382149|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001wqo.2||2.5368100|-0.2143077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382149|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001wqo.2||2.5368100|-0.2143077	chr14	 31290632	 31291074	+	NA	NA	NA	NA	COCH	NA	chr14:31290597-31301075	inter
LNCA_21_P0009763	2.2639077	A	3.841783	P	0.33497485305899	0	lncRNA	TCONS_00027300	NA	NA	NA	NA	XLOC_013300	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013300), lincRNA [TCONS_00027300]"	chr19:32895941-32882078	hs|19q13.11	Agilent_HUMAN_G3V2	TCONS_00027300	TCONS_00027300	chr19	 32882078	 32895941	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22855_PI429285431	1.6046246	A	1.0098995	A	1.51018479823121	0	lncRNA	24433-1_{1..1282}	lnc-STEAP1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STEAP1B-1:1	chr7	 22701284	 22702565	-	lnc-STEAP1B-1	lnc-STEAP1B-1:1	ENSG00000225541.1	AC002480.5	NA	NA	NA	inter
CUST_28748_PI429285431	1.1265339	A	1.2985493	A	0.887601862542511	0	lncRNA	30451-1_{1..485}	n326145|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096174|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096174|-1.3006500|-0.3402729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326145|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096174|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096174|-1.3006500|-0.3402729	chr1	241308912	241309396	-	NA	NA	NA	NA	RGS7	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-15.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80chr1:241298912-241331439"	NA	inner
CUST_3480_PI429285431	4.5076437	P	4.661344	P	0.898941849988694	0	lncRNA	3451-1_{1..534}	"transcript_id ""ENST00000421595.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421595.1"" | genecode_v17"	chr9	 93944339	 93944872	+	ENSG00000229694.2	ENST00000421595.1	RP11-305L7.6	RP11-305L7.6-004	NA	NA	NA	inter
CUST_42519_PI429285431	6.8108068	P	6.735766	P	1.05339082585274	0	lncRNA	45310-1_{1..72}	ENST00000364617 ncrna:snoRNA chromosome:GRCh37:1:76255162:76255233:1 gene:ENSG00000201487 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364617 ncrna:snoRNA chromosome:GRCh37:1:76255162:76255233:1 gene:ENSG00000201487 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 76255162	 76255233	+	ENSG00000201487	ENST00000364617	NA	NA	MSH4	NA	chr1:76262630-76265233	inter
LNCA_21_P0005406	4.125606	P	3.728393	P	1.31696134433971	0	lncRNA	TCONS_00013544	NA	NA	NA	NA	XLOC_006183	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006183), lincRNA [TCONS_00013544]"	chr7:98300385-98300444	hs|7q22.1	Agilent_HUMAN_G3V2	TCONS_00013544	TCONS_00013544	chr7	 98300385	 98300444	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10145_PI429285431	3.5838459	P	2.0543783	A	2.88679287677726	0	lncRNA	11667-1_{1..695}	lnc-PAFAH1B1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAFAH1B1-2:2	chr17	  2615776	  2616470	+	lnc-PAFAH1B1-2	lnc-PAFAH1B1-2:2	XLOC_012079	linc-RAP1GAP2-1	KIAA0664	"hg19_refFlat_LITAF:range=chr16:11645579-116505865'pad=0,hg19_refFlat_LITAF:range=chr16:11645579-116505865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70chr17:2605776-2614927"	NA	inter
CUST_27354_PI429285431	8.813559	P	8.714146	P	1.07133747084544	0	lncRNA	28917-1_{1..743}	n324515|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000106562|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000106562|-0.0294880|-0.1683405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324515|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000106562|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000106562|-0.0294880|-0.1683405	chr6	 41481534	 41482276	+	NA	NA	NA	NA	NA	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-20.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.61;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
CUST_25354_PI429285431	8.027121	P	8.207652	P	0.882378167390308	0	lncRNA	26884-1_{1..540}	lnc-SRGAP3-1:22	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRGAP3-1:22	chr3	  9404524	  9405063	-	lnc-SRGAP3-1	lnc-SRGAP3-1:22	ENSG00000254485.1	RP11-380O24.1	THUMPD3	NA	chr3:9404717-9414987	inner
CUST_25058_PI429285431	4.071772	P	4.2686343	P	0.872445973595266	0	lncRNA	26596-1_{1..517}	lnc-MFNG-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MFNG-2:3	chr22	 37822911	 37823427	-	lnc-MFNG-2	lnc-MFNG-2:3	ENSG00000243902.1	RP1-63G5.5	ELFN2	NA	chr22:37812911-37823505	inner
CUST_31556_PI429285431	6.819733	P	6.880319	P	0.958874560472198	0	lncRNA	33314-1_{1..1198}	n338047|AF153482|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|434|NULL|-0.9367700|-0.2169295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338047|AF153482|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|434|NULL|-0.9367700|-0.2169295	chr22	 36234311	 36235508	-	NA	NA	NA	NA	RBFOX2	NA	chr22:36224311-36245480	inner
CUST_32983_PI429285431	10.61943	P	10.384989	P	1.17645081035434	0	lncRNA	34599-1_{1..2170}	n339663|AK026967|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2107|NULL|1.9235800|-0.2290705	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339663|AK026967|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2107|NULL|1.9235800|-0.2290705	chr20	 34840481	 34842650	+	NA	NA	NA	NA	C20orf4	NA	chr20:34830481-34844853	inner
CUST_7107_PI429285431	0.9207649	A	0.91502225	A	1.00398843437507	0	lncRNA	7043-1_{1..497}	"transcript_id ""ENST00000468762.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000468762.2"" | genecode_v17"	chrX	112859587	112860083	-	ENSG00000241743.2	ENST00000468762.2	RP5-964N17.1	RP5-964N17.1-001	NA	NA	NA	inter
CUST_36816_PI429285431	0.90174806	A	0.89643586	A	1.00368892384514	0	lncRNA	37987-1_{1..2140}	n345295|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_844|NULL|-1.3374200|-0.2464443	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345295|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_844|NULL|-1.3374200|-0.2464443	chr15	 79646497	 79648636	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18362_PI429285431	9.39986	P	9.349072	P	1.03583053997599	0	lncRNA	20089-2_{3001..3620}	lnc-GLB1L2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLB1L2-1:5	chr11	134359408	134360027	+	lnc-GLB1L2-1	lnc-GLB1L2-1:5	ENSG00000255545	RP11-627G23.1	NA	NA	NA	inter
CUST_50907_PI429285431	10.804694	P	10.421191	P	1.30450547576978	0	lncRNA	54549-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00006111 range=chr12:9546891-9559219 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006111 range=chr12:9546891-9559219 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  9546891	  9549890	-	NA	NA	NA	NA	LOC728715	NA	chr12:9549658-9555094	inter
CUST_4179_PI429285431	1.6855551	A	2.2625196	A	0.670372791266079	0	lncRNA	4137-1_{1..389}	"transcript_id ""ENST00000536786.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536786.1"" | genecode_v17"	chr12	 22548022	 22548410	-	ENSG00000256714.1	ENST00000536786.1	RP11-73M14.1	RP11-73M14.1-001	NA	NA	NA	inter
CUST_45573_PI429285431	6.5358386	P	6.580185	P	0.969729044446841	0	lncRNA	49968-2_{3001..6000}	"gi|223278375|ref|NR_026777.1| Homo sapiens zinc finger protein 37B, pseudogene (ZNF37BP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|223278375|ref|NR_026777.1| Homo sapiens zinc finger protein 37B, pseudogene (ZNF37BP), non-coding RNA"	NA	NA	NA	NA	NA	NR_026777.1	NA	NA	NA	NA	NA	Unknown
CUST_45928_PI429285431	8.76408	P	9.099876	P	0.792346842451934	0	lncRNA	50234-1_{1..1866}	"gi|315113913|ref|NR_037647.1| Homo sapiens FAD-dependent oxidoreductase domain containing 1 (FOXRED1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315113913|ref|NR_037647.1| Homo sapiens FAD-dependent oxidoreductase domain containing 1 (FOXRED1), transcript variant 3, non-coding RNA"	Chr11	126138935	126140800	+	55572	NR_037647.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0011003	0.9259851	A	0.91380584	A	1.00847775406474	0	lncRNA	TCONS_l2_00004869	NA	NA	NA	NA	XLOC_l2_002537	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002537), lincRNA [TCONS_l2_00004869]"	chr7:20850-18292	hs|7p22.3	Agilent_HUMAN_G3V2	TCONS_l2_00004869	TCONS_l2_00004869	chr7	    18292	    20850	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48019_PI429285431	2.4132318	A	2.2618427	A	1.11063833636037	0	lncRNA	51902-1_{1..1114}	"gi|410173551|ref|XR_172273.1| PREDICTED: Homo sapiens uncharacterized LOC374890 (LOC374890), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|410173551|ref|XR_172273.1| PREDICTED: Homo sapiens uncharacterized LOC374890 (LOC374890), misc_RNA"	NA	NA	NA	NA	NA	XR_172273.1	NA	NA	NA	NA	NA	Unknown
CUST_21319_PI429285431	0.9078808	A	0.8967695	A	1.00773150115721	0	lncRNA	22942-1_{1..396}	lnc-PARN-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PARN-7:1	chr16	 14029274	 14029669	-	lnc-PARN-7	lnc-PARN-7:1	ENSG00000262732.1	CTD-2135D7.2	ERCC4	"hg19_refFlat_ERCC4:range=chr16:14014023-140422045'pad=0,hg19_refFlat_ERCC4:range=chr16:14014023-140422045'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40chr16:14019274-14039492"	NA	inner
CUST_37223_PI429285431	6.434217	P	7.2089005	P	0.584516842153478	0	lncRNA	38335-1_{1..265}	n345658|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1207|NULL|-1.2655200|-0.3784961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345658|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1207|NULL|-1.2655200|-0.3784961	chr4	184741553	184741817	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31162_PI429285431	7.375182	P	6.80764	P	1.48199645843246	0	lncRNA	32957-1_{1..210}	n337568|EF491814|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395541|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395541|0.2238000|-0.1321542	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337568|EF491814|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395541|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395541|0.2238000|-0.1321542	chr12	 57561968	 57562177	+	NA	NA	NA	NA	LRP1	NA	chr12:57551968-57573083	inner
CUST_50936_PI429285431	10.573852	P	10.293562	P	1.21443897749775	0	lncRNA	54577-1_{1..1161}	hg19_lincRNAsTranscripts_TCONS_l2_00005686 range=chr12:53547058-53548417 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005686 range=chr12:53547058-53548417 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 53547058	 53548218	+	NA	NA	NA	NA	CSAD	NA	chr12:53537058-53558417	inter
CUST_358_PI429201921	0.91910803	A	0.9099802	A	1.00634698692645	0	lncRNA	230-3_{6001..8523}	TC01004919.hg.1	TCONS_l2_00002268-XLOC_l2_000552 // Broad TUCP // linc-RGS1 chr1:+:192498708-192507232 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:192498708-192507232	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00002268-XLOC_l2_000552	linc-RGS1	chr1	192498708	192507232	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51814_PI429285431	3.7352731	P	1.2458941	A	5.61536188159253	0	lncRNA	55368-1_{1..1849}	hg19_lincRNAsTranscripts_TCONS_l2_00012433 range=chr19:28284306-28298149 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012433 range=chr19:28284306-28298149 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 28284306	 28286154	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60"	NA	inter
CUST_1933_PI429285431	0.90692276	A	0.910741	A	0.997356896873495	0	lncRNA	1925-1_{1..518}	"transcript_id ""ENST00000512752.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000512752.1"" | genecode_v17"	chr4	147895010	147895527	+	ENSG00000248346.1	ENST00000512752.1	RP11-292D4.1	RP11-292D4.1-002	NA	NA	NA	inter
CUST_17210_PI429285431	0.9035821	A	1.0871786	A	0.880505243137944	0	lncRNA	18924-1_{1..640}	lnc-RP3-368B9.1.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP3-368B9.1.1-5:1	chr4	  3650783	  3651422	+	lnc-RP3-368B9.1.1-5	lnc-RP3-368B9.1.1-5:1	XLOC_003431	linc-ADRA2C-1	NA	NA	NA	inter
CUST_32027_PI429285431	4.84426	P	4.40752	P	1.35354232401867	0	lncRNA	33747-1_{1..1559}	n338591|CR596712|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|997|NULL|2.1094200|-0.2450157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338591|CR596712|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|997|NULL|2.1094200|-0.2450157	chr13	 21276298	 21277856	-	NA	NA	NA	NA	IL17D	NA	chr13:21277482-21287857	inner
CUST_21637_PI429285431	8.25619	P	8.372245	P	0.922707315524689	0	lncRNA	23249-1_{1..440}	lnc-NNT-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NNT-3:1	chr5	 43488146	 43488585	+	lnc-NNT-3	lnc-NNT-3:1	ENSG00000249492.1	RP11-159F24.3	PAIP1	NA	chr5:43495178-43498542	inner
CUST_41460_PI429285431	7.3573236	P	6.6206484	P	1.66633122393182	0	lncRNA	42648-1_{1..98}	ENST00000401264 ncrna:miRNA chromosome:GRCh37:10:105807847:105807944:-1 gene:ENSG00000216083 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401264 ncrna:miRNA chromosome:GRCh37:10:105807847:105807944:-1 gene:ENSG00000216083 gene_biotype:miRNA transcript_biotype:miRNA	chr10	105807847	105807944	-	ENSG00000216083	ENST00000401264	NA	NA	COL17A1	NA	chr10:105797847-105817944	inter
LNCA_21_P0003761	0.95887065	A	0.9224949	A	1.02553430357227	0	lncRNA	TCONS_00008561	NA	NA	NA	NA	XLOC_004054	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004054), lincRNA [TCONS_00008561]"	chr4:120040962-120040903	hs|4q26	Agilent_HUMAN_G3V2	TCONS_00008561	TCONS_00008561	chr4	120040903	120040962	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_342_PI429201921	0.9951073	A	0.96882075	A	1.01838745314293	0	lncRNA	224-3_{6001..8051}	TC05002826.hg.1	TCONS_l2_00023648-XLOC_l2_011921 // Broad TUCP // linc-IRX2-5 chr5:-:4033825-4041877 // chr5 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr5:-:4033825-4041877	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00023648-XLOC_l2_011921	linc-IRX2-5	chr5	  4033825	  4041877	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17146_PI429285431	0.931956	A	0.91856456	A	1.00932545246172	0	lncRNA	18855-1_{1..3000}	lnc-FBXW11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXW11-2:1	chr5	171163981	171166980	-	lnc-FBXW11-2	lnc-FBXW11-2:1	XLOC_005081	linc-KCNMB1-2	C5orf50	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80chr5:171153981-171174435"	NA	inter
CUST_22124_PI429285431	1.8665867	A	1.6660247	A	1.14914591613347	0	lncRNA	23727-1_{1..467}	lnc-SPATA16-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPATA16-1:2	chr3	173638316	173638782	-	lnc-SPATA16-1	lnc-SPATA16-1:2	ENSG00000228213.1	NLGN1-AS1	NLGN1	NA	chr3:173628316-173648448	inner
LNCA_21_P0001647	2.8709	A	3.4695308	P	0.660380396792324	0	lncRNA	ENST00000549744	NA	NA	NA	NA	XLOC_001266	NA	ENST00000549744	NA	NA	"BROAD Institute lincRNA (XLOC_001266), lincRNA [TCONS_00001888]"	chr1:235115972-235115913	hs|1q42.3	Agilent_HUMAN_G3V2	ENST00000549744	ENST00000549744	chr1	235115913	235115972	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32017_PI429285431	1.9851793	A	3.0316496	A	0.484151241817234	0	lncRNA	33738-1_{1..2121}	n338582|AK091903|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|988|NULL|-1.0575300|-0.1351848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338582|AK091903|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|988|NULL|-1.0575300|-0.1351848	chr1	236227659	236229779	+	NA	NA	NA	NA	NID1	"hg19_refFlat_NID1:range=chr1:236141167-2362283795'pad=0,hg19_refFlat_NID1:range=chr1:236141167-2362283795'pad=0 3'pad=0 strand=- repeatMasking=none,-105.00chr1:236217659-236228481"	NA	inner
CUST_28625_PI429285431	0.9032915	A	0.8977922	A	1.00381909853204	0	lncRNA	30310-1_{1..1974}	n325994|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047732|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047732|-0.8557060|-0.2353546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325994|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047732|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047732|-0.8557060|-0.2353546	chr10	 43674864	 43676837	+	NA	NA	NA	NA	CSGALNACT2	NA	chr10:43664864-43680750	inner
CUST_36259_PI429285431	1.6540961	A	1.2842177	A	1.29224390707631	0	lncRNA	37499-3_{6001..6183}	n344792|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_341|NULL|-1.3287300|-0.2615506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344792|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_341|NULL|-1.3287300|-0.2615506	chr7	 22557433	 22557615	+	NA	NA	NA	NA	NA	"hg19_refFlat_EEF1A1:range=chr6:74227533-742297495'pad=0,hg19_refFlat_EEF1A1:range=chr6:74227533-742297495'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_EEF1A2:range=chr20:62119651-621291165'pad=0,hg19_refFlat_EEF1A2:range=chr20:62119651-621291165'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	inter
LNCA_21_P0008091	0.9942537	A	0.9252101	A	1.04902102978816	0	lncRNA	TCONS_00021856	NA	NA	NA	NA	XLOC_010451	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010451), lincRNA [TCONS_00021856]"	chr13:80733352-80733411	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00021856	TCONS_00021856	chr13	 80733352	 80733411	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47114_PI429285431	7.5111175	P	8.393551	P	0.54245166595169	0	lncRNA	51196-1_{1..2450}	"gi|261278317|ref|NR_029390.1| Homo sapiens uncharacterized LOC284412 (LOC284412), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|261278317|ref|NR_029390.1| Homo sapiens uncharacterized LOC284412 (LOC284412), non-coding RNA"	Chr19	 37756841	 37759290	-	284412	NR_029390.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30"	NA	inter
CUST_46436_PI429285431	1.0885096	A	0.90436393	A	1.13614397630449	0	lncRNA	50646-1_{1..857}	"gi|372622364|ref|NR_046005.1| Homo sapiens transmembrane and coiled-coil domains 5B, pseudogene (TMCO5B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372622364|ref|NR_046005.1| Homo sapiens transmembrane and coiled-coil domains 5B, pseudogene (TMCO5B), non-coding RNA"	Chr15	 33528677	 33529533	-	100652857	NR_046005.1	NA	NA	NA	NA	NA	inter
CUST_50371_PI429285431	6.4285707	P	5.9637027	P	1.38019106644726	0	lncRNA	54085-1_{1..976}	hg19_lincRNAsTranscripts_TCONS_l2_00030303 range=chrX:102085071-102160695 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030303 range=chrX:102085071-102160695 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	102085071	102086046	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6685_PI429285431	2.183186	A	1.4149289	A	1.7032109145034	0	lncRNA	6634-1_{1..427}	"transcript_id ""ENST00000599751.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599751.1"" | genecode_v17"	chr20	 34106682	 34107108	+	ENSG00000268340.1	ENST00000599751.1	RP3-477O4.16	RP3-477O4.16-001	CEP250	"hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-21.80chr20:34096682-34099803"	NA	inter
CUST_12310_PI429285431	7.5335307	P	7.502405	P	1.02180910763356	0	lncRNA	13924-1_{1..786}	lnc-LRRC30-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC30-1:1	chr18	  7276659	  7277444	+	lnc-LRRC30-1	lnc-LRRC30-1:1	XLOC_012621	linc-PTPRM	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40"	NA	inter
CUST_30918_PI429285431	6.422502	P	6.3821993	P	1.02832956366019	0	lncRNA	32706-1_{1..463}	n336968|BC105293|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338244|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338244|-1.3299500|-0.3208922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336968|BC105293|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338244|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338244|-1.3299500|-0.3208922	chr1	222886166	222886628	+	NA	NA	NA	NA	BROX	NA	chr1:222885906-222897275	inner
CUST_19582_PI429285431	0.90832746	A	2.029594	A	0.459690086820159	0	lncRNA	21238-1_{1..728}	lnc-PAPPA-AS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAPPA-AS1-1:1	chr9	119080883	119081610	-	lnc-PAPPA-AS1-1	lnc-PAPPA-AS1-1:1	ENSG00000244757.1	RP11-45A16.4	PAPPA	NA	chr9:119070883-119090968	inner
CUST_27716_PI429285431	4.671538	P	4.604214	P	1.04777140885358	0	lncRNA	29296-1_{1..1012}	n324929|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079862|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079862|-1.0775100|-0.3083516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324929|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079862|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079862|-1.0775100|-0.3083516	chr20	 56077515	 56078526	-	NA	NA	NA	NA	CTCFL	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.81;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00chr20:56067515-56090522"	NA	inter
CUST_1121_PI429285431	0.9081967	A	0.9122713	A	0.997179687074188	0	lncRNA	1110-1_{1..543}	"transcript_id ""ENST00000605238.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605238.1"" | genecode_v17"	chr2	145929565	145930107	+	ENSG00000226674.3	ENST00000605238.1	AC074093.1	AC074093.1-039	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.91;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60"	NA	inter
CUST_19422_PI429285431	0.9198222	A	0.9116621	A	1.00567217652756	0	lncRNA	21083-1_{1..281}	lnc-HRH4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-HRH4-3:1	chr18	 22019505	 22019785	+	lnc-HRH4-3	lnc-HRH4-3:1	ENSG00000265094.1	RP11-178F10.1	IMPACT	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-24.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50chr18:22009505-22029602"	NA	inner
CUST_47361_PI429285431	1.4857159	A	4.705221	P	0.107357500999135	0	lncRNA	51411-1_{1..880}	"gi|219521889|ref|NR_026552.1| Homo sapiens long intergenic non-protein coding RNA 161 (LINC00161), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|219521889|ref|NR_026552.1| Homo sapiens long intergenic non-protein coding RNA 161 (LINC00161), non-coding RNA"	Chr21	 29911640	 29912519	+	118421	NR_026552.1	NA	NA	NA	NA	NA	inter
CUST_50957_PI429285431	0.911091	A	1.0571736	A	0.903700984812456	0	lncRNA	54598-1_{1..336}	hg19_lincRNAsTranscripts_TCONS_l2_00006314 range=chr12:70616060-70619160 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006314 range=chr12:70616060-70619160 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 70616060	 70616395	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29886_PI429285431	12.362633	P	11.370192	P	1.98954840539691	0	lncRNA	31649-1_{1..251}	n333942|L47668|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193932|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193932|-0.7571940|-0.2210194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333942|L47668|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193932|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193932|-0.7571940|-0.2210194	chr7	 94047824	 94048074	+	NA	NA	NA	NA	COL1A2	NA	chr7:94037824-94059905	inner
CUST_2027_PI429285431	0.9122112	A	0.90364265	A	1.00595693868565	0	lncRNA	2018-1_{1..703}	"transcript_id ""ENST00000506276.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000506276.1"" | genecode_v17"	chr4	190701490	190702192	-	ENSG00000245685.2	ENST00000506276.1	AF146191.4	AF146191.4-004	FRG1	NA	chr4:190861974-190871426	inter
CUST_42950_PI429285431	8.722512	P	8.795128	P	0.950912170431317	0	lncRNA	46072-1_{1..129}	ENST00000365319 ncrna:snoRNA chromosome:GRCh37:9:20786926:20787054:1 gene:ENSG00000202189 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365319 ncrna:snoRNA chromosome:GRCh37:9:20786926:20787054:1 gene:ENSG00000202189 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	 20786926	 20787054	+	ENSG00000202189	ENST00000365319	NA	NA	KIAA1797	NA	chr9:20776926-20797054	inner
CUST_41593_PI429285431	6.500735	P	6.5664077	P	0.955499683210764	0	lncRNA	42926-1_{1..67}	ENST00000578505 ncrna:miRNA chromosome:GRCh37:3:113313723:113313789:1 gene:ENSG00000265253 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578505 ncrna:miRNA chromosome:GRCh37:3:113313723:113313789:1 gene:ENSG00000265253 gene_biotype:miRNA transcript_biotype:miRNA	chr3	113313723	113313789	+	ENSG00000265253	ENST00000578505	NA	NA	SIDT1	NA	chr3:113303723-113323789	inner
CUST_44285_PI429285431	0.92142504	A	0.9245361	A	0.997845900940993	0	lncRNA	48919-2_{3001..5184}	"gi|297747358|ref|NR_033703.1| Homo sapiens myoneurin (MYNN), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|297747358|ref|NR_033703.1| Homo sapiens myoneurin (MYNN), transcript variant 5, non-coding RNA"	Chr3	169493853	169496036	+	55892	NR_033703.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50"	NA	inter
CUST_20655_PI429285431	0.92085207	A	0.92401505	A	0.997809990907702	0	lncRNA	22294-1_{1..710}	lnc-MACC1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MACC1-1:7	chr7	 20042343	 20043052	-	lnc-MACC1-1	lnc-MACC1-1:7	ENSG00000243004.1	AC005062.2	NA	"hg19_refFlat_RPL21:range=chr13:27827914-278306625'pad=0,hg19_refFlat_RPL21:range=chr13:27827914-278306625'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40"	NA	inter
CUST_39757_PI429285431	4.1971836	P	4.0701876	P	1.092017518026	0	lncRNA	40679-2_{3001..6000}	n405913|NR_003149|lncRNA|Homosapiens||RefGeneNoncode|NR_003149||40.8024000|-0.2615927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405913|NR_003149|lncRNA|Homosapiens||RefGeneNoncode|NR_003149||40.8024000|-0.2615927	chr5	 89857616	 89860615	+	NA	NA	NA	NA	GPR98	NA	chr5:89854617-90460033	inner
CUST_38102_PI429285431	1.3649184	A	1.1598222	A	1.15276321136176	0	lncRNA	39178-1_{1..3000}	n381132|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001cza.2||-1.1734900|-0.3969690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381132|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001cza.2||-1.1734900|-0.3969690	chr1	 59120411	 59123410	-	NA	NA	NA	NA	MYSM1	NA	chr1:59120411-59134660	inner
CUST_39364_PI429285431	3.5036898	P	4.0182495	P	0.700006537088297	0	lncRNA	40328-1_{1..1428}	n386467|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lrw.2||-0.7735460|-0.4361489	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386467|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lrw.2||-0.7735460|-0.4361489	chr8	 10984314	 10985741	-	NA	NA	NA	NA	XKR6	NA	chr8:10974314-10997275	inner
CUST_19651_PI429285431	4.7748837	P	4.908535	P	0.911521569161957	0	lncRNA	21307-1_{1..685}	lnc-ALB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALB-1:1	chr4	 74183544	 74184228	+	lnc-ALB-1	lnc-ALB-1:1	ENSG00000250220.1	RP11-692D12.1	NA	NA	NA	inter
CUST_40965_PI429285431	3.2783287	P	3.4355688	P	0.896738907794608	0	lncRNA	41639-1_{1..3000}	n411020|NR_038843|lncRNA|Homosapiens||RefGeneNoncode|NR_038843||10.2222000|-0.3394568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n411020|NR_038843|lncRNA|Homosapiens||RefGeneNoncode|NR_038843||10.2222000|-0.3394568	chr15	 23599894	 23602893	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45106_PI429285431	5.4930544	P	5.4776835	P	1.01071125511598	0	lncRNA	49587-1_{1..2146}	"gi|378925620|ref|NR_046401.1| Homo sapiens acid-sensing (proton-gated) ion channel 3 (ASIC3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378925620|ref|NR_046401.1| Homo sapiens acid-sensing (proton-gated) ion channel 3 (ASIC3), transcript variant 4, non-coding RNA"	Chr7	150745379	150747524	+	9311	NR_046401.1	NA	NA	NA	NA	NA	inter
CUST_16997_PI429285431	3.0664105	A	3.6559918	P	0.664535741108923	0	lncRNA	18707-1_{1..238}	lnc-RGS8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGS8-2:1	chr1	182667649	182667886	-	lnc-RGS8-2	lnc-RGS8-2:1	XLOC_001117	linc-RGS8-1	NA	NA	NA	inter
LNCA_21_P0013787	4.654466	P	5.048478	P	0.761010360487125	0	lncRNA	ENST00000477796	XM_003403861	XM_003403861	NA	Hs.496546	FRMPD3	FERM and PDZ domain containing 3	ENST00000477796	THC2676068	GO:0005856	"BROAD Institute lincRNA (XLOC_l2_015593), lincRNA [TCONS_l2_00030321]"	chrX:106797630-106797689	hs|Xq22.3	Agilent_HUMAN_G3V2	ENST00000477796	ENST00000477796	chrX	106797630	106797689	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39447_PI429285431	0.9066003	A	1.0022212	A	0.935869385883978	0	lncRNA	40392-1_{1..3000}	n386856|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010uka.1||-0.1176710|-0.2199980	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386856|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010uka.1||-0.1176710|-0.2199980	chr15	 69096159	 69099158	-	NA	NA	NA	NA	ANP32A	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr15:69086159-69109440"	NA	inner
CUST_28061_PI429285431	0.9195352	A	0.91317666	A	1.00441713096367	0	lncRNA	29679-1_{1..2156}	n325327|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326016|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326016|-0.1772150|-0.2965566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325327|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326016|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326016|-0.1772150|-0.2965566	chr2	 43108495	 43110650	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.01;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70"	NA	inter
CUST_8360_PI429285431	3.2833638	P	3.5563254	P	0.827618844393115	0	lncRNA	9940-1_{1..1660}	lnc-SPRYD3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPRYD3-1:4	chr12	 53440637	 53442296	-	lnc-SPRYD3-1	lnc-SPRYD3-1:4	ENSG00000247550	ENST00000499537	EIF4B	"hg19_refFlat_EIF4B:range=chr12:53400268-534340075'pad=0,hg19_refFlat_EIF4B:range=chr12:53400268-534340075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80chr12:53430637-53435993"	NA	inner
CUST_46596_PI429285431	7.6092515	P	7.3796587	P	1.17250396382887	0	lncRNA	50778-1_{1..400}	"gi|310123459|ref|XR_109258.1| PREDICTED: Homo sapiens uncharacterized LOC100129781, transcript variant 1 (LOC100129781), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123459|ref|XR_109258.1| PREDICTED: Homo sapiens uncharacterized LOC100129781, transcript variant 1 (LOC100129781), misc_RNA"	NA	NA	NA	NA	NA	XR_109258.1	NA	NA	NA	NA	NA	Unknown
CUST_13373_PI429285431	0.94796234	A	0.9528455	A	0.99662097321783	0	lncRNA	15008-1_{1..569}	lnc-CUL2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CUL2-1:3	chr10	 35415533	 35416101	-	lnc-CUL2-1	lnc-CUL2-1:3	XLOC_008777	linc-CUL2-1	CREM	NA	chr10:35415801-35425585	inter
CUST_48740_PI429285431	4.8252187	P	4.279628	P	1.45961785081948	0	lncRNA	52578-2_{3001..3849}	hg19_lincRNAsTranscripts_TCONS_l2_00014902 range=chr2:132176511-132182503 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014902 range=chr2:132176511-132182503 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	132179511	132180359	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43796_PI429285431	0.90955657	A	0.901154	A	1.00584121143661	0	lncRNA	48526-1_{1..1340}	"gi|387598079|ref|NR_047499.1| Homo sapiens long intergenic non-protein coding RNA 570 (LINC00570), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|387598079|ref|NR_047499.1| Homo sapiens long intergenic non-protein coding RNA 570 (LINC00570), non-coding RNA"	Chr2	 11534107	 11535446	+	100874055	NR_047499.1	NA	NA	NA	NA	NA	inter
CUST_36464_PI429285431	4.206036	P	4.170567	P	1.02488994628446	0	lncRNA	37672-1_{1..1778}	n344972|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_521|NULL|-1.3488200|-0.2907388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344972|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_521|NULL|-1.3488200|-0.2907388	chr7	127921865	127923642	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13559_PI429285431	0.8997301	A	0.8928366	A	1.00478964393888	0	lncRNA	15200-1_{1..731}	lnc-BEST3-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BEST3-1:7	chr12	 70132058	 70132788	-	lnc-BEST3-1	lnc-BEST3-1:7	XLOC_010123	linc-BEST3-1	RAB3IP	NA	chr12:70132631-70142255	inter
CUST_4370_PI429285431	1.2467245	A	0.953221	A	1.22561299572498	0	lncRNA	4324-1_{1..537}	"transcript_id ""ENST00000548172.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548172.1"" | genecode_v17"	chr12	 90687100	 90687636	+	ENSG00000258183.1	ENST00000548172.1	RP11-753N8.1	RP11-753N8.1-002	NA	NA	NA	inter
CUST_2391_PI429285431	7.5845566	P	6.695423	P	1.85206354646439	0	lncRNA	2384-1_{1..368}	"transcript_id ""ENST00000519040.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519040.1"" | genecode_v17"	chr5	149855094	149855461	-	ENSG00000254333.1	ENST00000519040.1	CTC-367J11.1	CTC-367J11.1-001	NA	NA	NA	inter
CUST_35197_PI429285431	1.1019545	A	0.90532315	A	1.14601930747746	0	lncRNA	36598-1_{1..670}	n342181|AF075068|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4668|NULL|-1.0550500|-0.2752241	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342181|AF075068|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4668|NULL|-1.0550500|-0.2752241	chr6	169433475	169434144	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48627_PI429285431	4.513148	P	4.3707185	P	1.10376228857801	0	lncRNA	52474-1_{1..566}	hg19_lincRNAsTranscripts_TCONS_l2_00014674 range=chr2:88280271-88292380 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014674 range=chr2:88280271-88292380 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 88280271	 88280836	-	NA	NA	NA	NA	KRCC1	NA	chr2:88285246-88302380	inner
CUST_33338_PI429285431	0.92088205	A	0.90819967	A	1.00882950810516	0	lncRNA	34920-1_{1..1479}	n340057|BC034324|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2512|NULL|-1.2152500|-0.2969900	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340057|BC034324|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2512|NULL|-1.2152500|-0.2969900	chr4	 57095799	 57097277	-	NA	NA	NA	NA	KIAA1211	NA	chr4:57085799-57122587	inner
CUST_14908_PI429285431	0.92793363	A	0.91346157	A	1.01008174940827	0	lncRNA	16571-1_{1..966}	lnc-TOX3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TOX3-1:3	chr16	 52640416	 52641381	-	lnc-TOX3-1	lnc-TOX3-1:3	XLOC_011943	linc-TOX3-3	NA	NA	NA	inter
CUST_35601_PI429285431	1.2882607	A	0.91506076	A	1.29522248851303	0	lncRNA	37015-1_{1..3000}	n342739|AF086604|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5242|NULL|11.0086000|-0.0205524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342739|AF086604|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5242|NULL|11.0086000|-0.0205524	chr11	  1244353	  1247352	+	NA	NA	NA	NA	MUC5B	NA	chr11:1244295-1271606	inner
CUST_21815_PI429285431	2.4215891	A	2.4513707	A	0.979568576730199	0	lncRNA	23424-1_{1..314}	lnc-PPP1R12B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP1R12B-1:1	chr1	202574176	202574489	+	lnc-PPP1R12B-1	lnc-PPP1R12B-1:1	ENSG00000226862.1	RP11-569A11.1	SYT2	NA	chr1:202564176-202584421	inner
CUST_11935_PI429285431	0.91289204	A	0.9168942	A	0.997229758300642	0	lncRNA	13515-1_{1..241}	lnc-GALNT10-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GALNT10-1:2	chr5	153537433	153537673	+	lnc-GALNT10-1	lnc-GALNT10-1:2	XLOC_004609	linc-GALNT10	NA	NA	NA	inter
CUST_35702_PI429285431	0.8989067	A	0.8941885	A	1.00327576064296	0	lncRNA	37122-1_{1..914}	n342866|CR605703|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5370|NULL|-1.1198400|-0.2962564	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342866|CR605703|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5370|NULL|-1.1198400|-0.2962564	chr9	 86432880	 86433793	+	NA	NA	NA	NA	KIF27	NA	chr9:86451613-86453094	inter
CUST_40661_PI429285431	4.861732	P	2.731894	A	4.3766833203651	0	lncRNA	41395-5_{12001..13949}	n410211|NR_037163|lncRNA|Homosapiens||RefGeneNoncode|NR_037163||7.4038300|-0.3293164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410211|NR_037163|lncRNA|Homosapiens||RefGeneNoncode|NR_037163||7.4038300|-0.3293164	chr1	167202122	167204070	+	NA	NA	NA	NA	POU2F1	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr1:167180122-167396582"	NA	inner
CUST_51756_PI429285431	4.210519	P	4.591556	P	0.767885441066259	0	lncRNA	55309-1_{1..950}	hg19_lincRNAsTranscripts_TCONS_l2_00012438 range=chr19:28409545-28447647 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012438 range=chr19:28409545-28447647 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 28409545	 28410494	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43017_PI429285431	6.391519	P	6.6554317	P	0.832826165123562	0	lncRNA	46288-1_{1..91}	ENST00000516218 ncrna:snRNA chromosome:GRCh37:2:177529404:177529494:1 gene:ENSG00000252027 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516218 ncrna:snRNA chromosome:GRCh37:2:177529404:177529494:1 gene:ENSG00000252027 gene_biotype:snRNA transcript_biotype:snRNA	chr2	177529404	177529494	+	ENSG00000252027	ENST00000516218	NA	NA	NA	NA	NA	inter
CUST_27879_PI429285431	1.1514192	A	0.90891844	A	1.18304156316541	0	lncRNA	29472-1_{1..808}	n325115|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330941|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330941|-1.1764400|-0.3746850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325115|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330941|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330941|-1.1764400|-0.3746850	chr2	224071734	224072541	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21690_PI429285431	3.4831924	P	3.7669976	P	0.821421605774872	0	lncRNA	23301-1_{1..718}	lnc-MPZL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MPZL1-1:1	chr1	167789901	167790618	+	lnc-MPZL1-1	lnc-MPZL1-1:1	ENSG00000232194.1	RP1-313L4.3	ADCY10	NA	chr1:167779901-167800462	inner
CUST_24274_PI429285431	1.2482084	A	1.115696	A	1.09620103351906	0	lncRNA	25825-1_{1..821}	lnc-LAMA1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LAMA1-5:1	chr18	  7754762	  7755582	-	lnc-LAMA1-5	lnc-LAMA1-5:1	ENSG00000266767.1	RP11-678G15.2	PTPRM	NA	chr18:7744762-7764829	inner
LNCA_21_P0007649	3.1257856	P	3.1839898	P	0.960458910349652	0	lncRNA	TCONS_00020611	NA	NA	NA	NA	XLOC_009927	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009927), lincRNA [TCONS_00020611]"	chr12:124634290-124680015	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00020611	TCONS_00020611	chr12	124634290	124680015	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39710_PI429285431	6.253401	P	6.2867393	P	0.977156604438841	0	lncRNA	40646-1_{1..3000}	n405614|NR_002775|lncRNA|Homosapiens||RefGeneNoncode|NR_002775||5.3925300|-0.1908722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405614|NR_002775|lncRNA|Homosapiens||RefGeneNoncode|NR_002775||5.3925300|-0.1908722	chr11	 61382507	 61385506	+	NA	NA	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-58.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20"	NA	inter
CUST_8563_PI429285431	0.8942194	A	0.89038026	A	1.00266463290708	0	lncRNA	10122-1_{1..2376}	lnc-MLLT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MLLT1-1:1	chr19	  6199491	  6201866	-	lnc-MLLT1-1	lnc-MLLT1-1:1	ENSG00000247165	ENST00000502114	ACSBG2	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-30.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ACSBG2:range=chr19:6141555-61906685'pad=0,hg19_refFlat_ACSBG2:range=chr19:6141555-61906685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20chr19:6189491-6193112"	NA	inter
CUST_36318_PI429285431	0.899282	A	0.89804846	M	1.00085539041099	0	lncRNA	37550-1_{1..542}	n344845|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_394|NULL|-1.3452800|-0.3048988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344845|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_394|NULL|-1.3452800|-0.3048988	chr5	115267145	115267686	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22034_PI429285431	0.9068784	A	0.91140676	A	0.99686610097883	0	lncRNA	23643-1_{1..554}	lnc-CNBD1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CNBD1-4:4	chr8	 89721559	 89722112	+	lnc-CNBD1-4	lnc-CNBD1-4:4	ENSG00000253553.1	RP11-586K2.1	NA	NA	NA	inter
CUST_51058_PI429285431	1.1815991	A	0.91003	A	1.20711999851397	0	lncRNA	54696-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00007082 range=chr13:24513744-24528372 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007082 range=chr13:24513744-24528372 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 24519744	 24522743	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35885_PI429285431	0.908201	A	0.9082638	A	0.999956471304462	0	lncRNA	37273-1_{1..3000}	n344548|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_96|NULL|-1.5259900|-0.3527759	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344548|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_96|NULL|-1.5259900|-0.3527759	chr5	127292490	127295489	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40"	NA	inter
CUST_10027_PI429285431	6.66191	P	6.987056	P	0.798217603056074	0	lncRNA	11553-1_{1..793}	lnc-LRRC8D-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC8D-2:1	chr1	 90253130	 90253922	+	lnc-LRRC8D-2	lnc-LRRC8D-2:1	XLOC_000291	linc-LRRC8D-2	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10"	NA	inter
CUST_29421_PI429285431	5.607486	P	4.7381587	P	1.82681089625527	0	lncRNA	31177-1_{1..520}	n332792|AF049126|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064173|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064173|1.4308300|-0.3322806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332792|AF049126|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064173|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064173|1.4308300|-0.3322806	chr4	 39506864	 39507383	-	NA	NA	NA	NA	UGDH	NA	chr4:39500375-39521996	inner
CUST_37647_PI429285431	4.837638	P	4.891739	P	0.963194460471751	0	lncRNA	38739-1_{1..2419}	n346124|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1674|NULL|-1.5107100|-0.1671195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346124|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1674|NULL|-1.5107100|-0.1671195	chr8	  8086130	  8088548	+	NA	NA	NA	NA	NA	"hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ALG1L2:range=chr3:129800860-1298170985'pad=0,hg19_refFlat_ALG1L2:range=chr3:129800860-1298170985'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70"	NA	inter
CUST_43496_PI429285431	4.243492	P	3.5828643	P	1.58077024906015	0	lncRNA	48288-1_{1..3000}	"gi|242332559|ref|NR_027962.1| Homo sapiens tRNA-yW synthesizing protein 3 homolog (S. cerevisiae) (TYW3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|242332559|ref|NR_027962.1| Homo sapiens tRNA-yW synthesizing protein 3 homolog (S. cerevisiae) (TYW3), transcript variant 3, non-coding RNA"	Chr1	 75198862	 75201861	+	127253	NR_027962.1	NA	NA	NA	NA	NA	inter
CUST_37312_PI429285431	3.4168692	P	3.3773613	P	1.02776319916865	0	lncRNA	38419-1_{1..338}	n345756|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1305|NULL|-1.6872400|-0.1463944	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345756|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1305|NULL|-1.6872400|-0.1463944	chr15	 28912527	 28912864	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40897_PI429285431	6.1524267	P	5.025519	P	2.18390136650532	0	lncRNA	41584-1_{1..2048}	n410723|NR_038133|lncRNA|Homosapiens||RefGeneNoncode|NR_038133||2.9716400|-0.2854720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410723|NR_038133|lncRNA|Homosapiens||RefGeneNoncode|NR_038133||2.9716400|-0.2854720	chr2	175664041	175666088	-	NA	NA	NA	NA	CHN1	NA	chr2:175664042-175870107	inner
CUST_9814_PI429285431	3.14509	P	3.863863	P	0.607613993096716	0	lncRNA	11331-1_{1..299}	lnc-ARRDC3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARRDC3-1:4	chr5	 90610149	 90610447	-	lnc-ARRDC3-1	lnc-ARRDC3-1:4	XLOC_004924	linc-LYSMD3-2	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_28952_PI429285431	1.0424525	A	0.8924141	A	1.10959900570702	0	lncRNA	30673-1_{1..561}	n326382|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039131|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039131|0.1502080|-0.1633343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326382|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039131|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039131|0.1502080|-0.1633343	chr1	147843214	147843774	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40"	NA	inter
CUST_17631_PI429285431	2.0972445	A	1.3899734	A	1.63271287014571	0	lncRNA	19357-1_{1..300}	lnc-FBXL14-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXL14-2:2	chr12	  1769127	  1769426	-	lnc-FBXL14-2	lnc-FBXL14-2:2	XLOC_009974	linc-FBXL14	NA	NA	NA	inter
CUST_27642_PI429285431	1.3103361	A	1.1602907	A	1.10960438952803	0	lncRNA	29220-1_{1..291}	n324848|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171140|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171140|-1.0236200|-0.2617942	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324848|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171140|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171140|-1.0236200|-0.2617942	chr21	 25421652	 25421942	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33080_PI429285431	7.628867	P	6.7042975	P	1.8981177593101	0	lncRNA	34684-3_{6001..6219}	n339766|D87436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2213|NULL|15.9451000|-0.2685408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339766|D87436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2213|NULL|15.9451000|-0.2685408	chr18	  2922999	  2923217	-	NA	NA	NA	NA	EMILIN2	NA	chr18:2906999-2914090	inner
LNCA_21_P0011421	2.4523804	A	2.592964	A	0.907152119279953	0	lncRNA	TCONS_l2_00009632	NA	NA	NA	NA	XLOC_l2_005152	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005152), lincRNA [TCONS_l2_00009632]"	chr16:22393921-22393980	hs|16p12.2	Agilent_HUMAN_G3V2	TCONS_l2_00009632	TCONS_l2_00009632	chr16	 22393921	 22393980	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50108_PI429285431	2.9687216	A	2.3390112	A	1.54725437360529	0	lncRNA	53838-1_{1..933}	hg19_lincRNAsTranscripts_TCONS_l2_00028795 range=chr9:69065476-69107146 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028795 range=chr9:69065476-69107146 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69065476	 69066408	+	NA	NA	NA	NA	LOC100507370	NA	chr9:69065490-69089939	inter
CUST_16266_PI429285431	0.91831774	A	0.9175339	A	1.00054346410915	0	lncRNA	17969-1_{1..227}	lnc-CITED2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CITED2-1:5	chr6	139781234	139781460	-	lnc-CITED2-1	lnc-CITED2-1:5	XLOC_005856	linc-CITED2-2	NA	NA	NA	inter
CUST_24096_PI429285431	3.0537171	A	3.63467	P	0.668522072741644	0	lncRNA	25647-1_{1..421}	lnc-TSPYL4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSPYL4-1:1	chr6	116565653	116566073	-	lnc-TSPYL4-1	lnc-TSPYL4-1:1	ENSG00000236326.1	RP3-486I3.5	NT5DC1	NA	chr6:116555653-116566853	inner
CUST_6384_PI429285431	5.6913867	P	5.7912393	P	0.933128324289024	0	lncRNA	6311-1_{1..522}	"transcript_id ""ENST00000595094.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595094.1"" | genecode_v17"	chr19	 20736598	 20737119	-	ENSG00000269110.1	ENST00000595094.1	CTC-513N18.7	CTC-513N18.7-001	ZNF737	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.42;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40chr19:20726598-20748626"	NA	inner
CUST_38501_PI429285431	0.91353977	A	0.9159996	A	0.998296428498891	0	lncRNA	39515-1_{1..2183}	n383040|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002frx.1||-0.1515240|-0.1563081	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383040|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002frx.1||-0.1515240|-0.1563081	chr17	   699304	   701486	+	NA	NA	NA	NA	NXN	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-61.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80chr17:702553-711487"	NA	inter
LNCA_21_P0011377	0.9251417	A	0.9128602	A	1.00854922476104	0	lncRNA	TCONS_l2_00009128	NA	NA	NA	NA	XLOC_l2_004950	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004950), lincRNA [TCONS_l2_00009128]"	chr15:59157758-59157473	hs|15q22.1	Agilent_HUMAN_G3V2	TCONS_l2_00009128	TCONS_l2_00009128	chr15	 59157473	 59157758	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47470_PI429285431	0.9203476	A	0.90728724	A	1.00909385179721	0	lncRNA	51494-1_{1..721}	"gi|98162690|ref|NR_003081.1| Homo sapiens glutathione S-transferase theta pseudogene 1 (GSTTP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|98162690|ref|NR_003081.1| Homo sapiens glutathione S-transferase theta pseudogene 1 (GSTTP1), non-coding RNA"	Chr22	 24340595	 24341315	-	25774	NR_003081.1	NA	NA	NA	NA	NA	inter
CUST_22431_PI429285431	0.92808044	A	0.9184139	A	1.00672283240975	0	lncRNA	24019-1_{1..472}	lnc-HPS4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HPS4-3:1	chr22	 26379271	 26379742	-	lnc-HPS4-3	lnc-HPS4-3:1	ENSG00000232464.1	CTA-125H2.1	MYO18B	NA	chr22:26369271-26389492	inner
LNCA_21_P0012284	7.627548	P	7.5258203	P	1.07305773409422	0	lncRNA	TCONS_l2_00017898	NA	NA	NA	NA	XLOC_l2_009467	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009467), lincRNA [TCONS_l2_00017898]"	chr22:20957057-20956998	hs|22q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00017898	TCONS_l2_00017898	chr22	 20956998	 20957057	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45334_PI429285431	0.9092147	A	0.9078119	A	1.00097281974736	0	lncRNA	49773-1_{1..3000}	"gi|392583881|ref|NR_052026.1| Homo sapiens family with sequence similarity 221, member B (FAM221B), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392583881|ref|NR_052026.1| Homo sapiens family with sequence similarity 221, member B (FAM221B), transcript variant 2, non-coding RNA"	Chr9	 35817014	 35820013	-	392307	NR_052026.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002493	3.9310482	P	4.531374	P	0.659604981719907	0	lncRNA	THC2716004	NA	NA	NA	NA	XLOC_002277	NA	NA	THC2716004	NA	"BROAD Institute lincRNA (XLOC_002277), lincRNA [TCONS_00004393]"	chr2:113576890-113576831	hs|2q13	Agilent_HUMAN_G3V2	THC2716004	THC2716004	chr2	113576831	113576890	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10861_PI429285431	1.0310183	A	0.91842324	A	1.08117125447862	0	lncRNA	12398-1_{1..365}	lnc-GGTLC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GGTLC1-1:1	chr20	 23980262	 23980626	-	lnc-GGTLC1-1	lnc-GGTLC1-1:1	XLOC_013696	linc-GGTLC1-3	NA	NA	NA	inter
CUST_6806_PI429285431	0.92024344	A	1.0995759	A	0.88311152053456	0	lncRNA	6754-1_{1..465}	"transcript_id ""ENST00000419467.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419467.1"" | genecode_v17"	chr21	 23413493	 23413957	-	ENSG00000233215.1	ENST00000419467.1	AP000472.2	AP000472.2-002	NA	NA	NA	inter
CUST_40823_PI429285431	1.1166741	A	1.878861	A	0.589601908722413	0	lncRNA	41526-1_{1..1939}	n410592|NR_037852_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037852_4||1.4960400|-0.3178016	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410592|NR_037852_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037852_4||1.4960400|-0.3178016	chr6	  2828800	  2830738	-	NA	NA	NA	NA	SERPINB1	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30chr6:2833733-2842081"	NA	inter
CUST_50320_PI429285431	1.1839845	A	0.9310106	A	1.19166101587108	0	lncRNA	54039-1_{1..908}	hg19_lincRNAsTranscripts_TCONS_l2_00029018 range=chr9:125369138-125371333 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029018 range=chr9:125369138-125371333 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	125369138	125370045	+	NA	NA	NA	NA	OR1Q1	NA	chr9:125377017-125377961	inter
CUST_17263_PI429285431	0.9437965	A	0.9202584	A	1.0164491900582	0	lncRNA	18981-1_{1..346}	lnc-DROSHA-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DROSHA-4:1	chr5	 31175904	 31176249	-	lnc-DROSHA-4	lnc-DROSHA-4:1	XLOC_004767	linc-CDH9-4	NA	NA	NA	inter
CUST_9051_PI429285431	0.927886	A	0.9150878	A	1.00891050049823	0	lncRNA	10575-1_{1..869}	lnc-RP1L1-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP1L1-5:5	chr8	  9758065	  9758933	-	lnc-RP1L1-5	lnc-RP1L1-5:5	ENSG00000253230	XLOC_007002	NA	NA	NA	inter
CUST_37044_PI429285431	0.90874964	A	0.90279	A	1.00413945162293	0	lncRNA	38181-2_{3001..4083}	n345498|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1047|NULL|-1.4147500|-0.3365736	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345498|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1047|NULL|-1.4147500|-0.3365736	chr2	 54251556	 54252638	-	NA	NA	NA	NA	ACYP2	"hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_HMGB1:range=chr13:31035494-310378175'pad=0,hg19_refFlat_HMGB1:range=chr13:31035494-310378175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SP100:range=chr2:231281012-2313803555'pad=0,hg19_refFlat_SP100:range=chr2:231281012-2313803555'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30chr2:54256624-54322205"	NA	inter
CUST_3582_PI429285431	0.95109	A	0.9059592	A	1.03177671970559	0	lncRNA	3552-1_{1..714}	"transcript_id ""ENST00000439973.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439973.1"" | genecode_v17"	chr10	  2488452	  2489165	-	ENSG00000234170.1	ENST00000439973.1	RP11-446F3.2	RP11-446F3.2-002	NA	NA	NA	inter
CUST_42589_PI429285431	4.416704	P	4.9282684	P	0.701461389032828	0	lncRNA	45436-1_{1..92}	ENST00000384408 ncrna:snoRNA chromosome:GRCh37:15:25324205:25324296:1 gene:ENSG00000207137 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384408 ncrna:snoRNA chromosome:GRCh37:15:25324205:25324296:1 gene:ENSG00000207137 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 25324205	 25324296	+	ENSG00000207137	ENST00000384408	NA	NA	SNRPN	NA	chr15:25314205-25334296	inter
LNCA_21_P0013070	0.97750825	A	0.9250208	A	1.03705143516363	0	lncRNA	TCONS_l2_00024672	NA	NA	NA	NA	XLOC_l2_012925	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012925), lincRNA [TCONS_l2_00024672]"	chr6:26952330-26952271	hs|6p22.2	Agilent_HUMAN_G3V2	TCONS_l2_00024672	TCONS_l2_00024672	chr6	 26952271	 26952330	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25388_PI429285431	0.90741503	A	1.367177	A	0.727106213890002	0	lncRNA	26919-1_{1..258}	lnc-OR1J2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR1J2-1:1	chr9	125237971	125238228	+	lnc-OR1J2-1	lnc-OR1J2-1:1	ENSG00000231465.1	RP11-542K23.9	OR1J1	NA	chr9:125239237-125240205	inter
CUST_25055_PI429285431	2.357512	M	2.9009984	P	0.686110856556734	0	lncRNA	26593-1_{1..569}	lnc-TRH-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TRH-1:2	chr3	129837900	129838468	+	lnc-TRH-1	lnc-TRH-1:2	ENSG00000249846.1	RP11-77P16.4	NA	NA	NA	inter
LNCA_21_P0002337	0.98770356	A	0.9258691	A	1.04379215209736	0	lncRNA	TCONS_00003990	NA	NA	NA	NA	XLOC_001813	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001813), lincRNA [TCONS_00003990]"	chr2:203176195-203177181	hs|2q33.1	Agilent_HUMAN_G3V2	TCONS_00003990	TCONS_00003990	chr2	203176195	203177181	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47675_PI429285431	1.474079	A	0.92682683	A	1.46129977816349	0	lncRNA	51655-3_{6001..7240}	"gi|254039635|ref|NR_028062.1| Homo sapiens protein kinase, Y-linked, pseudogene (PRKY), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|254039635|ref|NR_028062.1| Homo sapiens protein kinase, Y-linked, pseudogene (PRKY), non-coding RNA"	ChrY	  7148013	  7149252	+	5616	NR_028062.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50"	NA	inter
CUST_27803_PI429285431	0.92190987	A	0.91104245	A	1.00756116385098	0	lncRNA	29389-1_{1..556}	n325031|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078311|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078311|-0.9638020|-0.2138905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325031|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078311|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078311|-0.9638020|-0.2138905	chr20	 23116764	 23117319	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49655_PI429285431	2.2918527	A	1.2170196	A	2.10647836719988	0	lncRNA	53437-1_{1..419}	hg19_lincRNAsTranscripts_TCONS_l2_00026731 range=chr7:84277854-84509818 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026731 range=chr7:84277854-84509818 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 84277854	 84278272	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21408_PI429285431	0.9124412	A	0.9066434	A	1.0040268146418	0	lncRNA	23029-1_{1..814}	lnc-ADCK3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADCK3-2:1	chr1	227370568	227371381	+	lnc-ADCK3-2	lnc-ADCK3-2:1	ENSG00000228625.1	RP11-1B20.1	CDC42BPA	NA	chr1:227360568-227381145	inner
CUST_23293_PI429285431	5.819127	P	5.914677	P	0.935915379505664	0	lncRNA	24864-1_{1..2252}	lnc-C17orf97-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C17orf97-3:2	chr17	   181025	   183276	+	lnc-C17orf97-3	lnc-C17orf97-3:2	ENSG00000262061.1	RP11-1260E13.4	RPH3AL	NA	chr17:171025-193276	inner
CUST_27884_PI429285431	5.6875253	P	6.005193	P	0.802365956273911	0	lncRNA	29478-1_{1..532}	n325121|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332203|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332203|-0.0208398|-0.3169002	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325121|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332203|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332203|-0.0208398|-0.3169002	chr2	147353946	147354477	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2246_PI429285431	0.91237783	A	0.9025884	A	1.00680858957577	0	lncRNA	2238-1_{1..581}	"transcript_id ""ENST00000509265.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509265.1"" | genecode_v17"	chr5	 87963171	 87963751	-	ENSG00000245526.3	ENST00000509265.1	LINC00461	LINC00461-016	NA	NA	NA	inter
CUST_11671_PI429285431	1.4967784	A	1.7277129	A	0.852082779726548	0	lncRNA	13249-1_{1..326}	lnc-CRYBA4-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-7:2	chr22	 27678415	 27678740	+	lnc-CRYBA4-7	lnc-CRYBA4-7:2	XLOC_014196	linc-HSCB-7	NA	NA	NA	inter
CUST_13801_PI429285431	0.91350406	A	1.2663795	A	0.783021898206065	0	lncRNA	15443-1_{1..788}	lnc-CDH5-11:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH5-11:2	chr16	 63765314	 63766101	+	lnc-CDH5-11	lnc-CDH5-11:2	XLOC_011750	linc-CDH5-5	NA	NA	NA	inter
CUST_21614_PI429285431	3.6586752	P	4.93361	P	0.41324383446478	0	lncRNA	23227-1_{1..513}	lnc-MAP3K9-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP3K9-3:3	chr14	 71788391	 71788903	-	lnc-MAP3K9-3	lnc-MAP3K9-3:3	ENSG00000259146.1	RP1-261D10.2	NA	NA	NA	inter
CUST_19047_PI429285431	1.3265074	A	0.91223454	A	1.33262684382523	0	lncRNA	20737-1_{1..511}	lnc-USP46-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP46-1:2	chr4	 53617510	 53618020	-	lnc-USP46-1	lnc-USP46-1:2	ENSG00000226887	AC104066.1	LOC100288413	NA	chr4:53609684-53617807	inner
CUST_12446_PI429285431	10.982327	P	11.200016	P	0.85994184287179	0	lncRNA	14059-1_{1..3000}	lnc-PTPN14-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPN14-3:5	chr1	214013081	214016080	-	lnc-PTPN14-3	lnc-PTPN14-3:5	XLOC_001199	linc-ANGEL2-2	NA	"hg19_refFlat_TIGD1:range=chr2:233412817-2334145925'pad=0,hg19_refFlat_TIGD1:range=chr2:233412817-2334145925'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20"	NA	inter
CUST_17659_PI429285431	3.6850736	P	4.1559587	P	0.721521805023067	0	lncRNA	19388-1_{1..966}	lnc-ZDHHC17-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZDHHC17-6:1	chr12	 76691143	 76692108	+	lnc-ZDHHC17-6	lnc-ZDHHC17-6:1	XLOC_009810	linc-ZDHHC17-1	NA	NA	NA	inter
CUST_37358_PI429285431	2.666254	A	3.1528194	P	0.713722223420326	0	lncRNA	38462-1_{1..287}	n345804|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1353|NULL|-1.3306900|-0.2379377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345804|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1353|NULL|-1.3306900|-0.2379377	chr14	 69149984	 69150270	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8741_PI429285431	0.9190174	A	0.91176	A	1.00504312028637	0	lncRNA	10284-1_{1..592}	lnc-CRYBA4-1:38	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:38	chr22	 27114103	 27114694	+	lnc-CRYBA4-1	lnc-CRYBA4-1:38	ENSG00000244625	XLOC_014192	NA	NA	NA	inter
CUST_1220_PI429285431	0.929353	A	1.116603	A	0.878278261025898	0	lncRNA	1211-1_{1..554}	"transcript_id ""ENST00000435643.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435643.1"" | genecode_v17"	chr2	208038358	208038911	+	ENSG00000224342.1	ENST00000435643.1	AC007879.1	AC007879.1-001	KLF7	NA	chr2:208028358-208030614	inter
CUST_15596_PI429285431	0.9170107	A	0.9236824	A	0.995386206353154	0	lncRNA	17283-1_{1..313}	lnc-C3orf30-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C3orf30-4:2	chr3	117441673	117441985	+	lnc-C3orf30-4	lnc-C3orf30-4:2	XLOC_002773	linc-C3orf30-3	NA	NA	NA	inter
CUST_35839_PI429285431	0.90381694	A	0.9029272	A	1.00061691098379	0	lncRNA	37239-1_{1..3000}	n344510|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_58|NULL|-1.4594500|-0.3051135	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344510|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_58|NULL|-1.4594500|-0.3051135	chr3	 62936035	 62939034	+	NA	NA	NA	NA	NA	"hg19_refFlat_KRT8:range=chr12:53291212-532987655'pad=0,hg19_refFlat_KRT8:range=chr12:53291212-532987655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_KRT6C:range=chr12:52862846-528675215'pad=0,hg19_refFlat_KRT6C:range=chr12:52862846-528675215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_KRT5:range=chr12:52908726-529140805'pad=0,hg19_refFlat_KRT5:range=chr12:52908726-529140805'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_KRT6A:range=chr12:52881504-528869725'pad=0,hg19_refFlat_KRT6A:range=chr12:52881504-528869725'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_KRT3:range=chr12:53183826-531898265'pad=0,hg19_refFlat_KRT3:range=chr12:53183826-531898265'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00;hg19_refFlat_KRT8:range=chr12:53291212-533202335'pad=0,hg19_refFlat_KRT8:range=chr12:53291212-533202335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_KRT6B:range=chr12:52840974-528458625'pad=0,hg19_refFlat_KRT6B:range=chr12:52840974-528458625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60"	NA	inter
CUST_36455_PI429285431	1.3288758	A	1.2051493	A	1.08954554121615	0	lncRNA	37665-2_{3001..4810}	n344965|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_514|NULL|-1.3151500|-0.3658060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344965|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_514|NULL|-1.3151500|-0.3658060	chr7	105551098	105552907	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36603_PI429285431	0.92543155	A	1.1602365	A	0.849799882920858	0	lncRNA	37797-1_{1..2940}	n345100|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_649|NULL|-1.2782700|-0.2923822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345100|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_649|NULL|-1.2782700|-0.2923822	chrX	139796000	139798939	-	NA	NA	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inner
CUST_7802_PI429285431	6.954047	P	6.9105306	P	1.03062278996763	0	lncRNA	9426-1_{1..1412}	lnc-KIAA1147-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1147-2:8	chr7	141437998	141439409	-	lnc-KIAA1147-2	lnc-KIAA1147-2:8	ENSG00000228775	RP5-894A10.5	WEE2	"hg19_refFlat_WEE2:range=chr7:141408559-1414301205'pad=0,hg19_refFlat_WEE2:range=chr7:141408559-1414301205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50chr7:141427998-141431071"	NA	inter
LNCA_19_P00322997	0.9295532	A	0.92441547	A	1.00356755168161	0	lncRNA	THC2654949	NA	NA	NA	NA	XLOC_012053	NA	NA	THC2654949	NA	"BROAD Institute lincRNA (XLOC_012053), lincRNA [TCONS_00025091]"	chr16:087324384-087324325	hs|16q24.2	Agilent_HUMAN_G3V2	THC2654949	THC2654949	chr16	 87324325	 87324384	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41200_PI429285431	1.7848085	A	0.8915077	A	1.85742093404157	0	lncRNA	42072-1_{1..82}	ENST00000390186 ncrna:miRNA chromosome:GRCh37:2:56227849:56227930:-1 gene:ENSG00000211520 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390186 ncrna:miRNA chromosome:GRCh37:2:56227849:56227930:-1 gene:ENSG00000211520 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 56227849	 56227930	-	ENSG00000211520	ENST00000390186	NA	NA	NA	NA	NA	inter
CUST_28397_PI429285431	0.91454494	A	0.9164966	A	0.998648126978301	0	lncRNA	30054-1_{1..403}	n325717|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045180|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045180|-0.9158660|-0.3237063	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325717|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045180|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045180|-0.9158660|-0.3237063	chr13	 60157333	 60157735	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27025_PI429285431	0.9023991	A	0.90100807	A	1.00096465350176	0	lncRNA	28555-1_{1..399}	n324130|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001051|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001051|-1.1522800|-0.4756991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324130|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001051|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001051|-1.1522800|-0.4756991	chr9	 33722972	 33723370	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48856_PI429285431	1.2884576	A	1.3538035	A	0.955716147991353	0	lncRNA	52692-1_{1..242}	hg19_lincRNAsTranscripts_TCONS_l2_00019020 range=chr3:180707591-180834859 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019020 range=chr3:180707591-180834859 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	180707591	180707832	+	NA	NA	NA	NA	FXR1	NA	chr3:180697591-180700541	inter
CUST_10432_PI429285431	0.9094661	A	0.91776943	A	0.994261100978136	0	lncRNA	11960-1_{1..370}	lnc-TCIRG1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCIRG1-2:2	chr11	 67896548	 67896917	+	lnc-TCIRG1-2	lnc-TCIRG1-2:2	XLOC_009183	linc-LRP5-3	CHKA	NA	chr11:67886548-67888858	inter
CUST_13039_PI429285431	7.0105014	P	6.8516507	P	1.11639742352475	0	lncRNA	14664-1_{1..1025}	lnc-SIK1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIK1-2:1	chr21	 44808786	 44809810	-	lnc-SIK1-2	lnc-SIK1-2:1	XLOC_014103	linc-U2AF1-3	NA	NA	NA	inter
CUST_38_PI429285431	4.1161904	P	4.20129	P	0.942719450716006	0	lncRNA	37-1_{1..2738}	"transcript_id ""ENST00000355500.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000355500.1"" | genecode_v17"	chr11	 36290834	 36293571	-	ENSG00000196559.2	ENST00000355500.1	LINC00610	LINC00610-001	COMMD9	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20chr11:36293842-36304909"	NA	inner
CUST_46298_PI429285431	1.3699815	A	0.89780736	A	1.38719840032374	0	lncRNA	50529-2_{3001..3154}	"gi|222831584|ref|NR_026731.1| Homo sapiens chromosome 14 open reading frame 23 (C14orf23), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|222831584|ref|NR_026731.1| Homo sapiens chromosome 14 open reading frame 23 (C14orf23), transcript variant 1, non-coding RNA"	Chr14	 29244910	 29245063	+	387978	NR_026731.1	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.73;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50"	NA	inter
CUST_4994_PI429285431	1.2283902	A	0.90602136	A	1.25038193487803	0	lncRNA	4938-1_{1..889}	"transcript_id ""ENST00000553367.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553367.1"" | genecode_v17"	chr14	101129423	101130311	+	ENSG00000196273.3	ENST00000553367.1	LINC00523	LINC00523-004	NA	NA	NA	inter
CUST_10093_PI429285431	4.829797	P	5.125781	P	0.81451659629824	0	lncRNA	11619-1_{1..1111}	lnc-SULF2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SULF2-3:1	chr20	 46618759	 46619869	-	lnc-SULF2-3	lnc-SULF2-3:1	XLOC_013772	linc-SULF2-4	NA	NA	NA	inter
CUST_34648_PI429285431	0.91176826	A	0.9149351	A	0.997807321222631	0	lncRNA	36100-1_{1..1809}	n341546|BC022353|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4017|NULL|-1.1079800|-0.3769837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341546|BC022353|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4017|NULL|-1.1079800|-0.3769837	chr8	 81700289	 81702097	-	NA	NA	NA	NA	ZNF704	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00chr8:81690289-81712069"	NA	inner
CUST_1422_PI429285431	0.9017337	A	0.8981417	A	1.00249288676041	0	lncRNA	1411-1_{1..707}	"transcript_id ""ENST00000461121.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000461121.1"" | genecode_v17"	chr3	107560952	107561658	-	ENSG00000241469.2	ENST00000461121.1	LINC00635	LINC00635-004	NA	NA	NA	inter
CUST_17250_PI429285431	1.2760496	A	1.7148002	A	0.7377732570501	0	lncRNA	18968-1_{1..2001}	lnc-E2F3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-E2F3-1:1	chr6	 20331937	 20333937	+	lnc-E2F3-1	lnc-E2F3-1:1	XLOC_005194	linc-E2F3	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80"	NA	inter
LNCA_21_P0008719	0.92645174	A	0.915003	A	1.00796723267301	0	lncRNA	TCONS_00023623	NA	NA	NA	NA	XLOC_011422	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011422), lincRNA [TCONS_00023623]"	chr15:34967615-34967556	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00023623	TCONS_00023623	chr15	 34967556	 34967615	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38740_PI429285431	4.3455763	P	4.7258463	P	0.768293791206104	0	lncRNA	39732-1_{1..1747}	n384258|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003dgd.2||-0.7511750|-0.2464797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384258|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003dgd.2||-0.7511750|-0.2464797	chr3	 52872019	 52873765	-	NA	NA	NA	NA	TMEM110-MUSTN1	NA	chr3:52867131-52883766	inner
CUST_6971_PI429285431	1.3963974	A	0.89661145	A	1.41400375368233	0	lncRNA	6919-1_{1..546}	"transcript_id ""ENST00000602847.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602847.1"" | genecode_v17"	chr22	 31372501	 31373046	-	ENSG00000269987.1	ENST00000602847.1	RP3-430N8.11	RP3-430N8.11-001	MORC2	NA	chr22:31362501-31364187	inter
CUST_37356_PI429285431	0.91999763	A	1.2220935	A	0.811073256329792	0	lncRNA	38460-1_{1..498}	n345801|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1350|NULL|-1.3473900|-0.1597542	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345801|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1350|NULL|-1.3473900|-0.1597542	chr14	 23290275	 23290772	-	NA	NA	NA	NA	SLC7A7	NA	chr14:23280275-23289014	inter
CUST_44343_PI429285431	7.7825537	P	7.4261723	P	1.280210813752	0	lncRNA	48968-2_{3001..4695}	"gi|375331930|ref|NR_046335.1| Homo sapiens family with sequence similarity 193, member A (FAM193A), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375331930|ref|NR_046335.1| Homo sapiens family with sequence similarity 193, member A (FAM193A), transcript variant 3, non-coding RNA"	Chr4	  2630159	  2631853	+	8603	NR_046335.1	NA	NA	NA	NA	NA	inter
CUST_16345_PI429285431	0.92252344	A	0.9115146	A	1.00765993474831	0	lncRNA	18045-2_{3001..3610}	lnc-FAM72B-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM72B-5:2	chr1	121204873	121205482	+	lnc-FAM72B-5	lnc-FAM72B-5:2	XLOC_000375	linc-NBPF9-9	NA	NA	NA	inter
LNCA_21_P0008801	3.5615149	P	3.1204019	P	1.35765131461203	0	lncRNA	TCONS_00023834	NA	NA	NA	NA	XLOC_011609	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011609), lincRNA [TCONS_00023834]"	chr15:100889531-100889258	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_00023834	TCONS_00023834	chr15	100889258	100889531	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8152_PI429285431	10.17723	P	10.030506	P	1.10705277548371	0	lncRNA	9755-1_{1..1509}	lnc-RALGAPB-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RALGAPB-1:3	chr20	 37079176	 37080684	+	lnc-RALGAPB-1	lnc-RALGAPB-1:3	ENSG00000174365	SNHG11	NA	NA	NA	inter
CUST_40857_PI429285431	4.179374	P	3.6839855	P	1.40970031896169	0	lncRNA	41557-2_{3001..3335}	n410638|NR_037879|lncRNA|Homosapiens||RefGeneNoncode|NR_037879||0.6363220|-0.3615903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410638|NR_037879|lncRNA|Homosapiens||RefGeneNoncode|NR_037879||0.6363220|-0.3615903	chr2	 37426634	 37426968	+	NA	NA	NA	NA	CEBPZ	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_CEBPZ:range=chr2:37428907-374587105'pad=0,hg19_refFlat_CEBPZ:range=chr2:37428907-374587105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90chr2:37428772-37441886"	NA	inner
LNCA_21_P0002648	1.1853169	A	0.90936935	A	1.21078906422426	0	lncRNA	TCONS_00005101	NA	NA	NA	NA	XLOC_002010	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002010), lincRNA [TCONS_00005101]"	chr2:20726101-20726042	hs|2p24.1	Agilent_HUMAN_G3V2	TCONS_00005101	TCONS_00005101	chr2	 20726042	 20726101	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31911_PI429285431	0.92528546	A	0.9270676	A	0.99876547733448	0	lncRNA	33641-1_{1..1462}	n338466|BC028968|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|863|NULL|-1.0433100|-0.2765394	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338466|BC028968|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|863|NULL|-1.0433100|-0.2765394	chr1	202106774	202108235	+	NA	NA	NA	NA	ARL8A	"hg19_refFlat_ARL8A:range=chr1:202103595-2021137005'pad=0,hg19_refFlat_ARL8A:range=chr1:202103595-2021137005'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00;hg19_refFlat_ARL8A:range=chr1:202103644-2021137005'pad=0,hg19_refFlat_ARL8A:range=chr1:202103644-2021137005'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00chr1:202101977-202113866"	NA	inner
CUST_10345_PI429285431	1.3974625	A	0.9031395	A	1.40865957152661	0	lncRNA	11874-1_{1..248}	lnc-EFNB2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFNB2-5:1	chr13	105607637	105607884	-	lnc-EFNB2-5	lnc-EFNB2-5:1	XLOC_010712	linc-SLC10A2-5	NA	NA	NA	inter
LNCA_19_P00807053	1.5698998	A	1.4539423	A	1.08369404209708	0	lncRNA	ENST00000554032	XR_110219	XR_110219	NA	NA	LOC100506411	NA	ENST00000554032	THC2562982	NA	"PREDICTED: Homo sapiens hypothetical LOC100506411 (LOC100506411), miscRNA [XR_110219]"	chr14:71281913-71281972	hs|14q24.2	Agilent_HUMAN_G3V2	ENST00000554032	ENST00000554032	chr14	 71281913	 71281972	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5152_PI429285431	0.89757705	A	1.138557	A	0.846170356256538	0	lncRNA	5093-1_{1..828}	"transcript_id ""ENST00000561161.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561161.1"" | genecode_v17"	chr15	 38434461	 38435288	-	ENSG00000259380.1	ENST00000561161.1	RP11-346D14.1	RP11-346D14.1-002	NA	NA	NA	inter
CUST_11722_PI429285431	2.3888202	A	2.2006497	A	1.13931801568556	0	lncRNA	13300-1_{1..615}	lnc-CXCR4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CXCR4-1:1	chr2	136844701	136845315	-	lnc-CXCR4-1	lnc-CXCR4-1:1	XLOC_002334	linc-DARS	NA	NA	NA	inter
CUST_16951_PI429285431	5.017398	P	5.0809956	P	0.956875014773968	0	lncRNA	18662-2_{3001..5024}	lnc-C9orf170-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C9orf170-1:1	chr9	 89616509	 89618532	+	lnc-C9orf170-1	lnc-C9orf170-1:1	XLOC_007438	linc-C9orf170-1	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60"	NA	inter
CUST_36695_PI429285431	8.243423	P	7.9410276	P	1.23319026009469	0	lncRNA	37877-1_{1..1833}	n345184|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_733|NULL|-1.3132800|-0.3973306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345184|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_733|NULL|-1.3132800|-0.3973306	chr12	 68399869	 68401701	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18577_PI429285431	0.9047532	A	1.1984652	A	0.815800332358665	0	lncRNA	20285-1_{1..938}	lnc-MYC-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYC-2:6	chr8	128902835	128903772	+	lnc-MYC-2	lnc-MYC-2:6	ENSG00000249859	PVT1	NA	NA	NA	inter
CUST_28328_PI429285431	0.90814567	A	0.9142622	A	0.995769319127548	0	lncRNA	29973-1_{1..414}	n325633|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045754|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045754|-1.0138400|-0.3397104	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325633|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045754|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045754|-1.0138400|-0.3397104	chr13	108851043	108851456	+	NA	NA	NA	NA	LIG4	NA	chr13:108859790-108861989	inter
CUST_14953_PI429285431	3.7342877	P	4.473335	P	0.599134867194837	0	lncRNA	16617-1_{1..334}	lnc-ZEB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZEB1-1:1	chr10	 31894854	 31895187	+	lnc-ZEB1-1	lnc-ZEB1-1:1	XLOC_008441	linc-CCDC7	NA	NA	NA	inter
LNCA_21_P0003924	0.9166801	A	2.098502	A	0.440794491460158	0	lncRNA	AK098570	NA	AK098570	NA	Hs.171348	XLOC_004325	NA	NA	THC2524131	NA	"BROAD Institute lincRNA (XLOC_004325), lincRNA [TCONS_00010654]"	chr5:29165152-29172180	hs|5p13.3	Agilent_HUMAN_G3V2	AK098570	AK098570	chr5	 29165152	 29172180	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45079_PI429285431	2.6732612	A	1.4534307	A	2.32919350353299	0	lncRNA	49562-1_{1..1352}	"gi|397139234|ref|XR_108816.2| PREDICTED: Homo sapiens uncharacterized LOC100506881, transcript variant 2 (LOC100506881), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139234|ref|XR_108816.2| PREDICTED: Homo sapiens uncharacterized LOC100506881, transcript variant 2 (LOC100506881), misc_RNA"	NA	NA	NA	NA	NA	XR_108816.2	NA	NA	NA	NA	NA	Unknown
CUST_11662_PI429285431	1.0611808	A	1.0278429	A	1.02337713136109	0	lncRNA	13239-1_{1..259}	lnc-CEP44-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEP44-2:1	chr4	175101426	175101684	+	lnc-CEP44-2	lnc-CEP44-2:1	XLOC_003786	linc-KIAA1712-1	NA	NA	NA	inter
LNCA_33_P3295096	2.9417937	A	2.69418	A	1.18724172439286	0	lncRNA	XR_108823	XR_108823	XR_108823	100129703	Hs.664650	NAG20	NAG20	NA	NA	NA	"PREDICTED: Homo sapiens NAG20 (NAG20), miscRNA [XR_108823]"	chr7:137352618-137352559	hs|7q33	Agilent_HUMAN_G3V2	XR_108823	XR_108823	chr7	137352559	137352618	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013167	0.9158579	A	1.2001371	A	0.821151770587488	0	lncRNA	TCONS_l2_00025599	NA	NA	NA	NA	XLOC_l2_013252	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013252), lincRNA [TCONS_l2_00025599]"	chr7:1619111-1619170	hs|7p22.3	Agilent_HUMAN_G3V2	TCONS_l2_00025599	TCONS_l2_00025599	chr7	  1619111	  1619170	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7842_PI429285431	2.281034	A	2.4053404	A	0.917445014375212	0	lncRNA	9466-1_{1..1825}	lnc-RP11-181C3.1.1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RP11-181C3.1.1-1:6	chr12	 98897538	 98899362	-	lnc-RP11-181C3.1.1-1	lnc-RP11-181C3.1.1-1:6	ENSG00000245017	XLOC_010167	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_2278_PI429285431	1.0599757	A	0.9136207	A	1.10676965935353	0	lncRNA	2270-1_{1..593}	"transcript_id ""ENST00000504436.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504436.1"" | genecode_v17"	chr5	101917072	101917664	+	ENSG00000250958.1	ENST00000504436.1	LINC00492	LINC00492-001	NA	NA	NA	inter
CUST_45494_PI429285431	4.774178	P	4.6677957	P	1.07652535562435	0	lncRNA	49907-1_{1..1408}	"gi|223005919|ref|NR_026743.1| Homo sapiens aldo-keto reductase, truncated (TAKR), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223005919|ref|NR_026743.1| Homo sapiens aldo-keto reductase, truncated (TAKR), non-coding RNA"	Chr10	  4913859	  4915266	-	389932	NR_026743.1	NA	NA	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	inter
CUST_11712_PI429285431	7.1838884	P	7.2335896	P	0.966136407013101	0	lncRNA	13290-1_{1..773}	lnc-SLC39A11-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC39A11-1:10	chr17	 70588342	 70589114	-	lnc-SLC39A11-1	lnc-SLC39A11-1:10	XLOC_012568	linc-ABCA5-3	NA	NA	NA	inter
CUST_7434_PI429285431	1.0217124	A	0.9056542	A	1.08376968649565	0	lncRNA	9077-1_{1..545}	lnc-FEZF2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FEZF2-1:2	chr3	 62354867	 62355411	-	lnc-FEZF2-1	lnc-FEZF2-1:2	ENSG00000241472	RP11-204J18.3	FEZF2	NA	chr3:62355347-62359190	inter
CUST_39329_PI429285431	2.5080762	A	2.2318594	A	1.21101505472767	0	lncRNA	40295-1_{1..2089}	n386384|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ixm.1||0.4846020|-0.1789981	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386384|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ixm.1||0.4846020|-0.1789981	chr5	 68933824	 68935912	-	NA	NA	NA	NA	LOC100652868	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00chr5:68939262-68939633"	NA	inter
CUST_7934_PI429285431	1.3961842	A	1.8726847	A	0.71871888509488	0	lncRNA	9546-1_{1..381}	lnc-CALM3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CALM3-1:3	chr19	 47176726	 47177106	+	lnc-CALM3-1	lnc-CALM3-1:3	ENSG00000245598	CTB-12A17.1	PRKD2	NA	chr19:47177573-47186893	inter
CUST_51470_PI429285431	6.2235374	P	5.169679	P	2.07607476509361	0	lncRNA	55046-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00010129 range=chr16:33496996-33509669 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010129 range=chr16:33496996-33509669 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 33496996	 33499995	-	NA	NA	NA	NA	NA	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_32735_PI429285431	0.9136084	A	0.91594136	A	0.998384222130533	0	lncRNA	34375-1_{1..2052}	n339363|AK094677|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1795|NULL|0.4561300|-0.2499654	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339363|AK094677|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1795|NULL|0.4561300|-0.2499654	chr3	 51985864	 51987915	-	NA	NA	NA	NA	RRP9	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40chr3:51975864-51975922"	NA	inter
CUST_20892_PI429285431	2.936978	A	2.8875542	A	1.03485153048681	0	lncRNA	22523-1_{1..423}	lnc-RTN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RTN3-1:1	chr11	 63426259	 63426681	+	lnc-RTN3-1	lnc-RTN3-1:1	ENSG00000256789.1	RP11-697H9.2	ATL3	"hg19_refFlat_ATL3:range=chr11:63396791-634388075'pad=0,hg19_refFlat_ATL3:range=chr11:63396791-634388075'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90chr11:63416259-63436434"	NA	inner
CUST_35632_PI429285431	1.4003737	A	1.171167	A	1.17219021546502	0	lncRNA	37047-1_{1..2295}	n342776|AL359570|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5279|NULL|-0.2669100|-0.3302687	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342776|AL359570|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5279|NULL|-0.2669100|-0.3302687	chr11	 82901961	 82904255	-	NA	NA	NA	NA	ANKRD42	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-20.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20chr11:82905291-82914242"	NA	inter
CUST_21266_PI429285431	6.391751	P	6.122728	P	1.20499152528066	0	lncRNA	22891-1_{1..382}	lnc-TRAF3IP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TRAF3IP2-1:1	chr6	111682510	111682891	-	lnc-TRAF3IP2-1	lnc-TRAF3IP2-1:1	ENSG00000229276.1	REV3L-IT1	REV3L	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-35.22;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80chr6:111672510-111692810"	NA	inner
CUST_4856_PI429285431	1.9391972	A	1.6185213	A	1.24891552651076	0	lncRNA	4799-1_{1..322}	"transcript_id ""ENST00000553990.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553990.1"" | genecode_v17"	chr14	 62536236	 62536557	-	ENSG00000258842.1	ENST00000553990.1	RP11-355I22.5	RP11-355I22.5-001	SYT16	"hg19_refFlat_SYT16:range=chr14:62462738-625674255'pad=0,hg19_refFlat_SYT16:range=chr14:62462738-625674255'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40chr14:62526236-62557872"	NA	inner
CUST_40976_PI429285431	6.6455336	P	6.8409443	P	0.873324246468544	0	lncRNA	41647-1_{1..2192}	n411087|NR_038911|lncRNA|Homosapiens||RefGeneNoncode|NR_038911||-0.9322770|-0.1389896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411087|NR_038911|lncRNA|Homosapiens||RefGeneNoncode|NR_038911||-0.9322770|-0.1389896	chr22	 24235896	 24238087	-	NA	NA	NA	NA	SLC2A11	"hg19_refFlat_MIF:range=chr22:24236662-242372935'pad=0,hg19_refFlat_MIF:range=chr22:24236662-242372935'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.50chr22:24225896-24227738"	NA	inner
CUST_33980_PI429285431	5.5725183	P	6.2491665	P	0.625617077667999	0	lncRNA	35517-1_{1..2766}	n340792|AK125169|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3255|NULL|10.7564000|-0.2444653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340792|AK125169|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3255|NULL|10.7564000|-0.2444653	chr17	 61851521	 61854286	+	NA	NA	NA	NA	DDX42	NA	chr17:61851567-61896677	inner
CUST_46109_PI429285431	4.737642	P	3.6802087	P	2.08122551585819	0	lncRNA	50371-1_{1..3000}	"gi|315138996|ref|NR_037659.1| Homo sapiens POC1 centriolar protein homolog B (Chlamydomonas) (POC1B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315138996|ref|NR_037659.1| Homo sapiens POC1 centriolar protein homolog B (Chlamydomonas) (POC1B), transcript variant 3, non-coding RNA"	Chr12	 89813495	 89816494	-	282809	NR_037659.1	NA	NA	NA	NA	NA	inter
CUST_7748_PI429285431	5.175901	P	5.3628564	P	0.878457624777589	0	lncRNA	9377-1_{1..1121}	lnc-BHLHE41-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BHLHE41-2:1	chr12	 26112259	 26113379	-	lnc-BHLHE41-2	lnc-BHLHE41-2:1	ENSG00000246695	RP11-877E17.2	NA	NA	NA	inner
CUST_47288_PI429285431	7.9719024	P	7.088194	P	1.84511201040653	0	lncRNA	51357-1_{1..2986}	"gi|313747442|ref|NR_037628.1| Homo sapiens zinc finger, SWIM-type containing 3 (ZSWIM3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|313747442|ref|NR_037628.1| Homo sapiens zinc finger, SWIM-type containing 3 (ZSWIM3), transcript variant 2, non-coding RNA"	Chr20	 44486220	 44489205	+	140831	NR_037628.1	NA	NA	NA	NA	NA	inter
CUST_1572_PI429285431	5.713407	P	6.3331614	P	0.650781705382517	0	lncRNA	1560-1_{1..579}	"transcript_id ""ENST00000439810.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439810.1"" | genecode_v17"	chr3	177924467	177925045	-	ENSG00000223930.1	ENST00000439810.1	RP11-33A14.1	RP11-33A14.1-001	NA	NA	NA	inter
CUST_46321_PI429285431	5.3385496	P	2.839407	A	5.65349335495966	0	lncRNA	50550-1_{1..2464}	"gi|224451118|ref|NR_026895.1| Homo sapiens adaptor-related protein complex 5, mu 1 subunit (AP5M1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224451118|ref|NR_026895.1| Homo sapiens adaptor-related protein complex 5, mu 1 subunit (AP5M1), transcript variant 2, non-coding RNA"	Chr14	 57735606	 57738069	+	55745	NR_026895.1	NA	NA	NA	NA	NA	inter
CUST_27659_PI429285431	0.9059047	A	0.913422	A	0.994802956303744	0	lncRNA	29237-1_{1..861}	n324866|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171047|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171047|-1.3093100|-0.2944017	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324866|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171047|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171047|-1.3093100|-0.2944017	chr21	 23771830	 23772690	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013451	2.4125896	A	1.5381814	A	1.83325592231769	0	lncRNA	ENST00000421965	NA	NA	NA	NA	XLOC_l2_013972	NA	ENST00000421965	THC2701349	NA	"BROAD Institute lincRNA (XLOC_l2_013972), lincRNA [TCONS_l2_00027468]"	chr7:116203937-116203878	hs|7q31.2	Agilent_HUMAN_G3V2	ENST00000421965	ENST00000421965	chr7	116203878	116203937	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8265_PI429285431	3.4088154	P	3.4058666	P	1.00204604270067	0	lncRNA	9853-1_{1..3000}	lnc-WDR27-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR27-1:9	chr6	169823265	169826264	-	lnc-WDR27-1	lnc-WDR27-1:9	ENSG00000245454	XLOC_005939	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50"	NA	inter
CUST_13556_PI429285431	10.907573	P	10.702618	P	1.15265039320148	0	lncRNA	15197-1_{1..765}	lnc-C13orf44-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-C13orf44-1:1	chr13	 44711239	 44712003	-	lnc-C13orf44-1	lnc-C13orf44-1:1	XLOC_010585	linc-CCDC122-3	NA	NA	NA	inter
CUST_13698_PI429285431	1.6687094	A	2.1138763	A	0.734499340239046	0	lncRNA	15338-1_{1..334}	lnc-TNKS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TNKS2-1:1	chr10	 93557566	 93557899	+	lnc-TNKS2-1	lnc-TNKS2-1:1	XLOC_008563	linc-TNKS2-1	TNKS2	NA	chr10:93558151-93567593	inter
LNCA_21_P0011297	1.9771752	A	2.2619953	A	0.820843959354085	0	lncRNA	AL832775	NA	AL832775	NA	NA	HERC2P9	hect domain and RLD 2 pseudogene 9	NA	THC2564482	NA	"BROAD Institute lincRNA (XLOC_l2_004594), lincRNA [TCONS_l2_00008479]"	chr15:28927526-28927585	hs|15q13.1	Agilent_HUMAN_G3V2	AL832775	AL832775	chr15	 28927526	 28927585	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46829_PI429285431	0.9302574	A	0.9100841	A	1.01408128635843	0	lncRNA	50968-1_{1..1696}	"gi|213385284|ref|NR_024462.1| Homo sapiens RAMP2 antisense RNA 1 (RAMP2-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|213385284|ref|NR_024462.1| Homo sapiens RAMP2 antisense RNA 1 (RAMP2-AS1), transcript variant 2, non-coding RNA"	Chr17	 40905932	 40907627	-	100190938	NR_024462.1	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	inter
CUST_35804_PI429285431	4.723415	P	4.296372	P	1.3444750660768	0	lncRNA	37211-1_{1..3000}	n344481|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_29|NULL|-1.6397700|-0.2736331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344481|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_29|NULL|-1.6397700|-0.2736331	chrX	110761302	110764301	+	NA	NA	NA	NA	NA	"hg19_refFlat_EIF4B:range=chr12:53400268-534340075'pad=0,hg19_refFlat_EIF4B:range=chr12:53400268-534340075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50"	NA	inter
LNCA_21_P0005071	0.9267146	A	0.9146352	A	1.00840795199264	0	lncRNA	TCONS_00012337	NA	NA	NA	NA	XLOC_005885	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005885), lincRNA [TCONS_00012337]"	chr6:154682760-154679596	hs|6q25.2	Agilent_HUMAN_G3V2	TCONS_00012337	TCONS_00012337	chr6	154679596	154682760	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40433_PI429285431	7.1061974	P	7.1349854	P	0.980243448791307	0	lncRNA	41215-1_{1..3000}	n409326|NR_033681|lncRNA|Homosapiens||RefGeneNoncode|NR_033681||5.8662100|-0.0969415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409326|NR_033681|lncRNA|Homosapiens||RefGeneNoncode|NR_033681||5.8662100|-0.0969415	chr17	 79860776	 79863775	-	NA	NA	NA	NA	ANAPC11	NA	chr17:79850776-79858363	inter
CUST_7593_PI429285431	10.319543	P	10.234069	P	1.06103628945116	0	lncRNA	9228-1_{1..2661}	lnc-CHCHD8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHCHD8-1:1	chr11	 73596627	 73599287	-	lnc-CHCHD8-1	lnc-CHCHD8-1:1	ENSG00000247629	ENST00000421949	PAAF1	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10chr11:73588033-73607748"	NA	inner
CUST_40996_PI429285431	1.190521	A	1.6845036	A	0.710062243111038	0	lncRNA	41664-1_{1..3000}	n411511|NR_039981|lncRNA|Homosapiens||RefGeneNoncode|NR_039981||-1.2098600|-0.3642356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411511|NR_039981|lncRNA|Homosapiens||RefGeneNoncode|NR_039981||-1.2098600|-0.3642356	chr7	104622193	104625192	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00"	NA	inter
CUST_36962_PI429285431	2.5863497	A	3.1746283	A	0.665136063177225	0	lncRNA	38108-2_{3001..4355}	n345424|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_973|NULL|-1.6790900|-0.2753956	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345424|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_973|NULL|-1.6790900|-0.2753956	chr1	224626282	224627636	+	NA	NA	NA	NA	WDR26	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70chr1:224613282-224622001"	NA	inter
CUST_32984_PI429285431	6.4103074	P	7.709252	P	0.406423407495152	0	lncRNA	34600-1_{1..651}	n339664|AK130977|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2108|NULL|-1.0926500|-0.1147136	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339664|AK130977|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2108|NULL|-1.0926500|-0.1147136	chr20	 35179196	 35179846	+	NA	NA	NA	NA	MYL9	NA	chr20:35169897-35178226	inter
CUST_17024_PI429285431	1.9094796	A	3.9683297	P	0.240007251380645	0	lncRNA	18735-1_{1..336}	lnc-SMC1B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMC1B-3:1	chr22	 46016089	 46016424	-	lnc-SMC1B-3	lnc-SMC1B-3:1	XLOC_014399	linc-FBLN1-AS	NA	NA	NA	inter
CUST_25399_PI429285431	5.507689	P	5.5139585	P	0.995663742582772	0	lncRNA	26930-1_{1..491}	lnc-NCOA5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NCOA5-1:2	chr20	 44650163	 44650653	-	lnc-NCOA5-1	lnc-NCOA5-1:2	ENSG00000204044.5	RP11-465L10.10	SLC12A5	NA	chr20:44650329-44660366	inner
CUST_41475_PI429285431	10.0554695	P	9.957993	P	1.06990040119484	0	lncRNA	42672-1_{1..75}	ENST00000581997 ncrna:miRNA chromosome:GRCh37:2:220413795:220413869:-1 gene:ENSG00000265252 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581997 ncrna:miRNA chromosome:GRCh37:2:220413795:220413869:-1 gene:ENSG00000265252 gene_biotype:miRNA transcript_biotype:miRNA	chr2	220413795	220413869	-	ENSG00000265252	ENST00000581997	NA	NA	TMEM198	NA	chr2:220408745-220415317	inner
CUST_18897_PI429285431	3.9288297	P	4.191513	P	0.833536164695976	0	lncRNA	20589-1_{1..1767}	lnc-TATDN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TATDN1-1:1	chr8	125485051	125486817	-	lnc-TATDN1-1	lnc-TATDN1-1:1	ENSG00000245149	RP11-383J24.5	RNF139	NA	chr8:125487008-125496817	inter
CUST_31966_PI429285431	0.9242877	A	0.91107094	A	1.00920325179435	0	lncRNA	33689-1_{1..2038}	n338523|BC023996|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|921|NULL|-1.2960900|-0.2483368	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338523|BC023996|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|921|NULL|-1.2960900|-0.2483368	chr1	214202233	214204270	-	NA	NA	NA	NA	PROX1	NA	chr1:214192233-214209766	inner
CUST_51743_PI429285431	5.6855392	P	5.488657	P	1.14621859002118	0	lncRNA	55296-1_{1..260}	hg19_lincRNAsTranscripts_TCONS_l2_00012131 range=chr18:68309780-68317925 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012131 range=chr18:68309780-68317925 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 68309780	 68310039	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12939_PI429285431	2.2122455	A	0.90861785	A	2.46848803121229	0	lncRNA	14567-1_{1..439}	lnc-BTBD9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTBD9-1:1	chr6	 38131289	 38131727	-	lnc-BTBD9-1	lnc-BTBD9-1:1	XLOC_005706	linc-MDGA1-1	BTBD9	NA	chr6:38136227-38141580	inter
CUST_51286_PI429285431	3.3915284	P	3.6793454	P	0.819140595924167	0	lncRNA	54892-1_{1..809}	hg19_lincRNAsTranscripts_TCONS_l2_00008535 range=chr15:31126795-31129026 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008535 range=chr15:31126795-31129026 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 31126795	 31127603	+	NA	NA	NA	NA	FAN1	NA	chr15:31117044-31139026	inter
CUST_15761_PI429285431	4.211397	P	4.088201	P	1.08914497308774	0	lncRNA	17449-1_{1..371}	lnc-APOB-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APOB-3:1	chr2	 21321870	 21322240	-	lnc-APOB-3	lnc-APOB-3:1	XLOC_002013	linc-APOB-3	NA	NA	NA	inter
CUST_26997_PI429285431	0.9207777	A	1.0586278	A	0.908872545910853	0	lncRNA	28526-1_{1..1761}	n324100|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000037052|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000037052|-1.1257200|-0.2780797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324100|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000037052|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000037052|-1.1257200|-0.2780797	chr9	 43174018	 43175778	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90"	NA	inter
CUST_30539_PI429285431	11.842756	P	12.238005	P	0.760358132311052	0	lncRNA	32319-1_{1..652}	n335709|CR623096|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000302291|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000302291|-1.2310100|-0.3198096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335709|CR623096|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000302291|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000302291|-1.2310100|-0.3198096	chr15	 64979774	 64980425	-	NA	NA	NA	NA	ZNF609	NA	chr15:64969774-64978267	inner
CUST_1971_PI429285431	4.4096155	P	4.205526	P	1.15195910384256	0	lncRNA	1963-1_{1..3000}	"transcript_id ""ENST00000503929.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503929.1"" | genecode_v17"	chr4	171961759	171964758	+	ENSG00000248872.1	ENST00000503929.1	RP11-344G13.1	RP11-344G13.1-001	NA	NA	NA	inter
LNCA_21_P0006386	0.98354614	A	0.9254959	A	1.04105785055409	0	lncRNA	TCONS_00016844	NA	NA	NA	NA	XLOC_007801	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007801), lincRNA [TCONS_00016844]"	chr9:100660100-100660041	hs|9q22.33	Agilent_HUMAN_G3V2	TCONS_00016844	TCONS_00016844	chr9	100660041	100660100	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48715_PI429285431	5.4770265	P	5.846797	P	0.773905597775525	0	lncRNA	52557-1_{1..1014}	hg19_lincRNAsTranscripts_TCONS_l2_00013968 range=chr2:128145000-128156214 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013968 range=chr2:128145000-128156214 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	128145000	128146013	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26185_PI429285431	3.6588762	P	4.6078424	P	0.518003517618355	0	lncRNA	27696-1_{1..1900}	lnc-DEF8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DEF8-1:1	chr16	 90038194	 90040093	+	lnc-DEF8-1	lnc-DEF8-1:1	ENSG00000261317.1	RP11-566K11.5	DEF8	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CENPBD1:range=chr16:90037767-900383305'pad=0,hg19_refFlat_CENPBD1:range=chr16:90037767-900383305'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr16:90028194-90034468"	NA	inner
CUST_4942_PI429285431	1.1476343	A	1.4669727	A	0.801437321406308	0	lncRNA	4886-1_{1..459}	"transcript_id ""ENST00000555996.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555996.1"" | genecode_v17"	chr14	 88490935	 88491393	+	ENSG00000258867.1	ENST00000555996.1	RP11-300J18.3	RP11-300J18.3-006	GPR65	NA	chr14:88480935-88481155	inter
CUST_31804_PI429285431	0.91459185	A	1.2932094	A	0.76917429220759	0	lncRNA	33541-1_{1..1188}	n338345|BC057229|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|739|NULL|5.5031600|-0.3556573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338345|BC057229|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|739|NULL|5.5031600|-0.3556573	chr14	 64932305	 64933492	+	NA	NA	NA	NA	MTHFD1	NA	chr14:64922305-64926725	inner
CUST_40958_PI429285431	0.9565149	A	0.9168381	A	1.02788352907974	0	lncRNA	41634-1_{1..3000}	n410982|NR_038444|lncRNA|Homosapiens||RefGeneNoncode|NR_038444||0.4131340|-0.2784239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n410982|NR_038444|lncRNA|Homosapiens||RefGeneNoncode|NR_038444||0.4131340|-0.2784239	chr10	 97512962	 97515961	-	NA	NA	NA	NA	ENTPD1	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ENTPD1:range=chr10:97602163-976261405'pad=0,hg19_refFlat_ENTPD1:range=chr10:97602163-976261405'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ENTPD1:range=chr10:97515997-976261405'pad=0,hg19_refFlat_ENTPD1:range=chr10:97515997-976261405'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.60;hg19_refFlat_ENTPD1:range=chr10:97604234-976261405'pad=0,hg19_refFlat_ENTPD1:range=chr10:97604234-976261405'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ENTPD1:range=chr10:97471714-976261405'pad=0,hg19_refFlat_ENTPD1:range=chr10:97471714-976261405'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ENTPD1:range=chr10:97515472-976261405'pad=0,hg19_refFlat_ENTPD1:range=chr10:97515472-976261405'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50chr10:97502962-97637023"	NA	inner
CUST_43792_PI429285431	2.157347	A	2.0515728	A	1.07607169278894	0	lncRNA	48523-1_{1..1400}	"gi|310118881|ref|XR_108388.1| PREDICTED: Homo sapiens uncharacterized LOC100506299 (LOC100506299), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310118881|ref|XR_108388.1| PREDICTED: Homo sapiens uncharacterized LOC100506299 (LOC100506299), misc_RNA"	Chr2	  8811202	  8812601	-	100506299	XR_108388.2	NA	NA	NA	NA	NA	inter
CUST_14256_PI429285431	1.2009377	A	1.080223	A	1.08727335596991	0	lncRNA	15913-1_{1..582}	lnc-FRK-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRK-1:2	chr6	116247641	116248222	-	lnc-FRK-1	lnc-FRK-1:2	XLOC_005815	linc-HS3ST5-2	NA	NA	NA	inter
CUST_18872_PI429285431	0.91090333	A	1.0635071	A	0.899625356463747	0	lncRNA	20565-1_{1..761}	lnc-ARHGEF35-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARHGEF35-1:10	chr7	144052431	144053191	-	lnc-ARHGEF35-1	lnc-ARHGEF35-1:10	ENSG00000244479	RP4-798C17.6	ARHGEF5	NA	chr7:144052489-144062461	inter
CUST_43953_PI429285431	8.633039	P	8.608806	P	1.01693889901114	0	lncRNA	48662-1_{1..2475}	"gi|397138974|ref|XR_158977.1| PREDICTED: Homo sapiens PP12901 (LOC100131492), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138974|ref|XR_158977.1| PREDICTED: Homo sapiens PP12901 (LOC100131492), misc_RNA"	NA	NA	NA	NA	NA	XR_158977.1	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00"	NA	Unknown
LNCA_21_P0010649	2.6103108	A	2.48317	A	1.09212712682597	0	lncRNA	TCONS_l2_00001494	NA	NA	NA	NA	XLOC_l2_001086	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001086), lincRNA [TCONS_l2_00001494]"	chr1:142815953-142814173	hs|1q21.1	Agilent_HUMAN_G3V2	TCONS_l2_00001494	TCONS_l2_00001494	chr1	142814173	142815953	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26383_PI429285431	5.746616	P	5.749734	P	0.997841100873273	0	lncRNA	27889-1_{1..578}	lnc-MZT2B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MZT2B-2:1	chr2	130866860	130867437	+	lnc-MZT2B-2	lnc-MZT2B-2:1	ENSG00000224087.1	AC018804.3	POTEF	NA	chr2:130856860-130877314	inner
CUST_32883_PI429285431	0.89416975	A	1.0454339	A	0.90046109498453	0	lncRNA	34510-1_{1..1483}	n339549|BC067836|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1991|NULL|2.6875100|-0.1343220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339549|BC067836|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1991|NULL|2.6875100|-0.1343220	chr20	   584440	   585922	-	NA	NA	NA	NA	TCF15	NA	chr20:584637-590910	inner
LNCA_21_P0001169	0.91822	A	0.9206215	A	0.998336791712328	0	lncRNA	ENST00000456126	NA	NA	NA	NA	XLOC_000980	NA	ENST00000456126	NA	NA	"BROAD Institute lincRNA (XLOC_000980), lincRNA [TCONS_00000617]"	chr1:118147353-118147294	hs|1p12	Agilent_HUMAN_G3V2	ENST00000456126	ENST00000456126	chr1	118147294	118147353	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011255	1.5705032	A	0.9213107	A	1.56829015245161	0	lncRNA	TCONS_l2_00007915	NA	NA	NA	NA	XLOC_l2_004306	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004306), lincRNA [TCONS_l2_00007915]"	chr14:101539279-101539338	hs|14q32.31	Agilent_HUMAN_G3V2	TCONS_l2_00007915	TCONS_l2_00007915	chr14	101539279	101539338	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005891	1.5721893	A	0.92191756	A	1.5694637855848	0	lncRNA	TCONS_00015146	NA	NA	NA	NA	XLOC_007189	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007189), lincRNA [TCONS_00015146]"	chr8:118694291-118694232	hs|8q24.11	Agilent_HUMAN_G3V2	TCONS_00015146	TCONS_00015146	chr8	118694232	118694291	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23217_PI429285431	1.9163059	A	1.5217167	A	1.31456839031306	0	lncRNA	24789-1_{1..579}	lnc-ASPH-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASPH-3:1	chr8	 62213480	 62214058	-	lnc-ASPH-3	lnc-ASPH-3:1	ENSG00000253711.1	RP11-787D18.1	CLVS1	"hg19_refFlat_CLVS1:range=chr8:62212387-624121015'pad=0,hg19_refFlat_CLVS1:range=chr8:62212387-624121015'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90chr8:62203480-62223628"	NA	inner
CUST_39774_PI429285431	14.6599455	P	14.174847	P	1.39968142557851	0	lncRNA	40690-1_{1..1638}	n405976|NR_003259|lncRNA|Homosapiens||RefGeneNoncode|NR_003259||6.1971100|-0.1888602	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405976|NR_003259|lncRNA|Homosapiens||RefGeneNoncode|NR_003259||6.1971100|-0.1888602	chr20	 57464179	 57465816	+	NA	NA	NA	NA	GNAS	NA	chr20:57454179-57486250	inner
CUST_22296_PI429285431	1.100796	A	0.900131	A	1.14922796136914	0	lncRNA	23896-1_{1..504}	lnc-ABRA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ABRA-1:1	chr8	107669730	107670233	-	lnc-ABRA-1	lnc-ABRA-1:1	ENSG00000253582.1	RP11-649G15.2	OXR1	NA	chr8:107659730-107679776	inner
CUST_21751_PI429285431	0.9121386	A	1.7340819	A	0.565679463006461	0	lncRNA	23361-1_{1..1316}	lnc-SUPT6H-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SUPT6H-1:2	chr17	 26962084	 26963399	+	lnc-SUPT6H-1	lnc-SUPT6H-1:2	ENSG00000264044.1	RP11-192H23.7	KIAA0100	"hg19_refFlat_KIAA0100:range=chr17:26942082-269720745'pad=0,hg19_refFlat_KIAA0100:range=chr17:26942082-269720745'pad=0 3'pad=0 strand=- repeatMasking=none,-95.90chr17:26952084-26972173"	NA	inner
CUST_33298_PI429285431	1.5918875	A	0.9114629	A	1.60261135079412	0	lncRNA	34881-1_{1..2520}	n340011|BC042008|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2464|NULL|2.5128600|-0.3528449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n340011|BC042008|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2464|NULL|2.5128600|-0.3528449	chr10	 31605456	 31607975	-	NA	NA	NA	NA	ZEB1	NA	chr10:31608101-31617959	inter
CUST_3237_PI429285431	0.91988754	A	0.918647	A	1.00086024660342	0	lncRNA	3216-1_{1..2125}	"transcript_id ""ENST00000519366.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519366.1"" | genecode_v17"	chr8	 96517634	 96519758	+	ENSG00000253872.1	ENST00000519366.1	RP11-90D11.1	RP11-90D11.1-001	NA	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-20.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-25.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30"	NA	inter
CUST_1507_PI429285431	4.4272823	P	4.590099	P	0.893279339747528	0	lncRNA	1494-1_{1..279}	"transcript_id ""ENST00000498604.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000498604.1"" | genecode_v17"	chr3	154229324	154229602	-	ENSG00000243861.1	ENST00000498604.1	RP11-656A15.1	RP11-656A15.1-001	NA	NA	NA	inter
CUST_45180_PI429285431	0.92126364	A	0.8997734	A	1.01500739610033	0	lncRNA	49652-1_{1..2491}	"gi|197304789|ref|NR_024106.1| Homo sapiens ADAM metallopeptidase domain 3A (pseudogene) (ADAM3A), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|197304789|ref|NR_024106.1| Homo sapiens ADAM metallopeptidase domain 3A (pseudogene) (ADAM3A), transcript variant 3, non-coding RNA"	Chr8	 39308564	 39311054	-	1587	NR_024106.2	NA	NA	NA	NA	NA	inter
CUST_29900_PI429285431	13.626125	P	13.970278	P	0.787770337378585	0	lncRNA	31663-1_{1..253}	n333985|M16439|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194447|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194447|1.3193300|-0.1375897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333985|M16439|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194447|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194447|1.3193300|-0.1375897	chr12	 54059020	 54059272	-	NA	NA	NA	NA	ATP5G2	NA	chr12:54058944-54070512	inner
CUST_50309_PI429285431	1.2729945	A	1.3847057	A	0.925489674857167	0	lncRNA	54028-1_{1..535}	hg19_lincRNAsTranscripts_TCONS_l2_00029514 range=chr9:99973438-99979711 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029514 range=chr9:99973438-99979711 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 99973438	 99973972	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50160_PI429285431	0.9955411	A	0.94886273	A	1.03288409400803	0	lncRNA	53885-1_{1..535}	hg19_lincRNAsTranscripts_TCONS_l2_00028610 range=chr9:6645889-6669881 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028610 range=chr9:6645889-6669881 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	  6645889	  6646423	+	NA	NA	NA	NA	GLDC	"hg19_refFlat_RNF2:range=chr1:185056686-1850694335'pad=0,hg19_refFlat_RNF2:range=chr1:185056686-1850694335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90chr9:6635889-6645692"	NA	inter
CUST_35674_PI429285431	0.91166437	A	0.9179193	A	0.995673797995435	0	lncRNA	37094-1_{1..2275}	n342833|CR613267|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5336|NULL|0.0529741|-0.3325861	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342833|CR613267|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5336|NULL|0.0529741|-0.3325861	chr8	 17942376	 17944650	+	NA	NA	NA	NA	ASAH1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60chr8:17932376-17942507"	NA	inner
CUST_1774_PI429285431	5.816492	P	6.0400505	P	0.85645033921673	0	lncRNA	1760-1_{1..447}	"transcript_id ""ENST00000602820.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602820.1"" | genecode_v17"	chr4	 57827093	 57827539	-	ENSG00000269949.1	ENST00000602820.1	RP11-738E22.3	RP11-738E22.3-001	C4orf14	NA	chr4:57829516-57837539	inter
CUST_11682_PI429285431	0.9246309	A	0.9256446	A	0.999297603499061	0	lncRNA	13260-1_{1..635}	lnc-ZNF507-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF507-1:1	chr19	 32707195	 32707829	+	lnc-ZNF507-1	lnc-ZNF507-1:1	XLOC_013041	linc-ZNF507-1	NA	NA	NA	inter
CUST_44890_PI429285431	0.925152	A	0.91529	A	1.006859235024	0	lncRNA	49412-1_{1..2712}	"gi|315360665|ref|NR_037670.1| Homo sapiens sorting nexin 10 (SNX10), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315360665|ref|NR_037670.1| Homo sapiens sorting nexin 10 (SNX10), transcript variant 5, non-coding RNA"	Chr7	 26331515	 26334226	+	29887	NR_037670.1	NA	NA	NA	NA	NA	inter
CUST_26833_PI429285431	0.9107968	A	0.91302466	A	0.998456956839487	0	lncRNA	28347-1_{1..708}	n323904|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055939|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055939|-0.0847313|-0.2674170	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323904|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055939|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055939|-0.0847313|-0.2674170	chrX	 17898237	 17898944	-	NA	NA	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50"	NA	inter
CUST_10318_PI429285431	0.91910005	A	0.91728824	A	1.00125663990429	0	lncRNA	11846-1_{1..3000}	lnc-FOXA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXA2-2:1	chr20	 22559148	 22562147	-	lnc-FOXA2-2	lnc-FOXA2-2:1	XLOC_013684	linc-NKX2-2-6	FOXA2	NA	chr20:22561642-22566101	inter
CUST_26463_PI429285431	0.9163558	A	0.9089376	A	1.00515514669245	0	lncRNA	27971-1_{1..840}	lnc-RBM11-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-RBM11-3:1	chr21	 15970246	 15971085	+	lnc-RBM11-3	lnc-RBM11-3:1	ENSG00000223662.1	SAMSN1-AS1	LOC388813	"hg19_refFlat_SAMSN1:range=chr21:15858233-159547175'pad=0,hg19_refFlat_SAMSN1:range=chr21:15858233-159547175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80chr21:15964484-15980624"	NA	inner
CUST_31778_PI429285431	4.1970744	P	2.6477034	A	2.92689501794905	0	lncRNA	33518-1_{1..1000}	n338320|BC031314|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|714|NULL|-1.1240900|-0.3740649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338320|BC031314|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|714|NULL|-1.1240900|-0.3740649	chr14	 58460262	 58461261	-	NA	NA	NA	NA	C14orf37	NA	chr14:58470808-58471243	inter
CUST_14007_PI429285431	6.1401334	P	6.370259	P	0.852560665214267	0	lncRNA	15653-1_{1..333}	lnc-APOA4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APOA4-1:1	chr11	116684632	116684964	-	lnc-APOA4-1	lnc-APOA4-1:1	XLOC_009567	linc-APOA5	APOA4	NA	chr11:116691418-116694011	inter
CUST_49864_PI429285431	2.6438112	A	2.9978104	P	0.782412215597848	0	lncRNA	53616-1_{1..736}	hg19_lincRNAsTranscripts_TCONS_l2_00026018 range=chr7:75796406-75807924 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026018 range=chr7:75796406-75807924 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 75796406	 75797141	+	NA	NA	NA	NA	SRRM3	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr7:75804786-75817924"	NA	inter
CUST_35821_PI429285431	1.0808944	A	0.9018011	A	1.13217211802953	0	lncRNA	37226-1_{1..2679}	n344496|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_44|NULL|-1.4199800|-0.2291305	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344496|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_44|NULL|-1.4199800|-0.2291305	chr12	  9470626	  9473304	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36484_PI429285431	0.90885967	A	0.9043956	A	1.00309904969061	0	lncRNA	37686-3_{6001..7219}	n344986|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_535|NULL|-1.3681000|-0.2402240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344986|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_535|NULL|-1.3681000|-0.2402240	chr8	   569150	   570368	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20"	NA	inter
CUST_8699_PI429285431	4.575613	P	4.441545	P	1.09738366045082	0	lncRNA	10246-1_{1..1992}	lnc-GOLPH3L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GOLPH3L-1:1	chr1	150587598	150589589	-	lnc-GOLPH3L-1	lnc-GOLPH3L-1:1	ENSG00000246674	XLOC_001023	ENSA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr1:150594599-150597960"	NA	inter
CUST_49487_PI429285431	0.9000065	A	0.8960151	A	1.00277045830262	0	lncRNA	53279-1_{1..434}	hg19_lincRNAsTranscripts_TCONS_l2_00024019 range=chr6:8328328-8330138 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024019 range=chr6:8328328-8330138 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	  8328328	  8328761	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34659_PI429285431	1.246275	A	1.0737767	A	1.12700842462555	0	lncRNA	36111-1_{1..301}	n341559|U29109|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4030|NULL|-0.8260060|-0.4590418	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341559|U29109|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4030|NULL|-0.8260060|-0.4590418	chr8	 93996822	 93997122	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34366_PI429285431	11.547615	P	11.013965	P	1.44758694299404	0	lncRNA	35853-1_{1..1932}	n341234|AK001903|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3702|NULL|-1.0615200|-0.3357324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341234|AK001903|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3702|NULL|-1.0615200|-0.3357324	chr7	 41724712	 41726643	-	NA	NA	NA	NA	INHBA	NA	chr7:41728601-41736643	inter
CUST_31123_PI429285431	0.9151703	A	0.90501	A	1.00706744060736	0	lncRNA	32918-1_{1..561}	n337429|DQ925366|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394012|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394012|1.3718400|-0.0590892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337429|DQ925366|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394012|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394012|1.3718400|-0.0590892	chr12	 58156896	 58157456	-	NA	NA	NA	NA	METTL1	NA	chr12:58162351-58165914	inner
CUST_5473_PI429285431	3.2443962	P	3.0981672	P	1.10667300213657	0	lncRNA	5406-1_{1..454}	"transcript_id ""ENST00000417476.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417476.1"" | genecode_v17"	chr16	 26329467	 26329920	+	ENSG00000231876.2	ENST00000417476.1	AC009158.1	AC009158.1-001	NA	NA	NA	inter
CUST_33168_PI429285431	6.952533	P	6.949918	P	1.00181422359304	0	lncRNA	34761-1_{1..3000}	n339858|AK128599|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2306|NULL|3.8298000|-0.3002030	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339858|AK128599|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2306|NULL|3.8298000|-0.3002030	chr4	 11470873	 11473872	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003270	5.8290515	P	6.1049366	P	0.825943442608678	0	lncRNA	TCONS_00007058	NA	NA	NA	NA	XLOC_002958	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002958), lincRNA [TCONS_00007058]"	chr3:186163080-186163139	hs|3q27.3	Agilent_HUMAN_G3V2	TCONS_00007058	TCONS_00007058	chr3	186163080	186163139	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4664_PI429285431	0.91397214	A	1.0552046	A	0.906744214379104	0	lncRNA	4610-1_{1..510}	"transcript_id ""ENST00000450888.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450888.1"" | genecode_v17"	chr13	 88079469	 88079978	-	ENSG00000232636.1	ENST00000450888.1	RP11-342C20.2	RP11-342C20.2-001	NA	NA	NA	inter
CUST_18023_PI429285431	0.89494824	A	1.6407568	A	0.596333562051096	0	lncRNA	19757-1_{1..967}	lnc-RAB31-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB31-1:1	chr18	  9647984	  9648950	+	lnc-RAB31-1	lnc-RAB31-1:1	XLOC_012623	linc-RAB31	NA	NA	NA	inter
LNCA_21_P0014067	0.92461354	A	0.91210127	A	1.00871056275243	0	lncRNA	ENST00000412772	XR_108333	XR_108333	NA	NA	LOC100506775	NA	ENST00000412772	THC2657248	NA	"PREDICTED: Homo sapiens hypothetical LOC100506775, transcript variant 2 (LOC100506775), miscRNA [XR_108333]"	chr1:203257772-203257831	hs|1q32.1	Agilent_HUMAN_G3V2	ENST00000412772	ENST00000412772	chr1	203257772	203257831	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21111_PI429285431	4.820161	P	4.772501	P	1.03358712202298	0	lncRNA	22736-1_{1..485}	lnc-NIF3L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NIF3L1-1:1	chr2	201873709	201874193	+	lnc-NIF3L1-1	lnc-NIF3L1-1:1	ENSG00000183308.6	AC005037.3	FAM126B	"hg19_refFlat_FAM126B:range=chr2:201845993-2018887325'pad=0,hg19_refFlat_FAM126B:range=chr2:201845993-2018887325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr2:201863709-201883825"	NA	inner
CUST_33682_PI429285431	0.90257305	A	0.89384645	A	1.00606714922834	0	lncRNA	35243-1_{1..374}	n340454|AJ276246|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2915|NULL|-0.9759480|-0.4065203	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340454|AJ276246|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2915|NULL|-0.9759480|-0.4065203	chr17	  2139006	  2139379	-	NA	NA	NA	NA	SMG6	NA	chr17:2129006-2149380	inner
CUST_28487_PI429285431	6.013695	P	6.1979423	P	0.880108136633918	0	lncRNA	30154-1_{1..985}	n325829|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000315945|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000315945|1.0200200|-0.1058391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325829|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000315945|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000315945|1.0200200|-0.1058391	chr11	 63918389	 63919373	-	NA	NA	NA	NA	MACROD1	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr11:63908389-63929879"	NA	inner
CUST_24602_PI429285431	2.8280702	A	3.3477802	P	0.697512027847975	0	lncRNA	26151-1_{1..392}	lnc-ACP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACP1-1:2	chr2	   301362	   301753	+	lnc-ACP1-1	lnc-ACP1-1:2	ENSG00000228643.1	AC079779.4	NA	NA	NA	inter
CUST_19482_PI429285431	2.4072042	A	0.8744862	A	2.89330416951744	0	lncRNA	21139-1_{1..3000}	lnc-SAP30-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:4	chr4	174459214	174462213	+	lnc-SAP30-5	lnc-SAP30-5:4	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174449214-174451378	inter
CUST_26251_PI429285431	5.3179064	P	4.9501944	P	1.29030488583652	0	lncRNA	27758-1_{1..578}	lnc-ZNF280D-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZNF280D-1:2	chr15	 56921713	 56922290	-	lnc-ZNF280D-1	lnc-ZNF280D-1:2	ENSG00000260392.1	RP11-1129I3.1	ZNF280D	NA	chr15:56922374-56931763	inter
CUST_36968_PI429285431	0.928557	A	0.90889454	A	1.01372227661211	0	lncRNA	38115-1_{1..669}	n345431|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_980|NULL|-1.6391300|-0.1406273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345431|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_980|NULL|-1.6391300|-0.1406273	chr1	 27845364	 27846032	-	NA	NA	NA	NA	AHDC1	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr1:27860756-27862960"	NA	inter
CUST_15823_PI429285431	0.9269517	A	0.9068317	A	1.01404382207623	0	lncRNA	17512-1_{1..528}	lnc-MEIS1-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MEIS1-3:7	chr2	 66957071	 66957598	+	lnc-MEIS1-3	lnc-MEIS1-3:7	XLOC_001508	linc-ETAA1-6	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00"	NA	inter
CUST_32674_PI429285431	1.0945576	A	0.89286196	A	1.15004924614978	0	lncRNA	34325-1_{1..2160}	n339302|AK094336|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1734|NULL|-1.0941300|-0.3128005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339302|AK094336|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1734|NULL|-1.0941300|-0.3128005	chr16	 79236519	 79238678	-	NA	NA	NA	NA	WWOX	NA	chr16:79226519-79246564	inner
CUST_1959_PI429285431	1.9592869	A	1.0084103	A	1.93304684512977	0	lncRNA	1952-1_{1..358}	"transcript_id ""ENST00000513718.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513718.1"" | genecode_v17"	chr4	160587655	160588012	-	ENSG00000250488.1	ENST00000513718.1	RP11-6C14.1	RP11-6C14.1-001	NA	NA	NA	inter
CUST_14315_PI429285431	4.2311997	P	4.7103963	P	0.71737700171556	0	lncRNA	15973-1_{1..352}	lnc-FOXP1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXP1-1:3	chr3	 70655142	 70655493	-	lnc-FOXP1-1	lnc-FOXP1-1:3	XLOC_003156	linc-FRMD4B-2	NA	NA	NA	inter
CUST_5617_PI429285431	1.0314608	A	0.9078442	A	1.08946254620269	0	lncRNA	5545-1_{1..2365}	"transcript_id ""ENST00000563701.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563701.1"" | genecode_v17"	chr16	 74401360	 74403724	+	ENSG00000261079.1	ENST00000563701.1	RP11-252A24.3	RP11-252A24.3-001	NPIPL2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr16:74411872-74413724"	NA	inter
CUST_37383_PI429285431	4.4347014	P	4.6606016	P	0.855061325644182	0	lncRNA	38486-1_{1..378}	n345831|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1380|NULL|-1.6971700|-0.2288488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345831|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1380|NULL|-1.6971700|-0.2288488	chr1	224149778	224150155	-	NA	NA	NA	NA	LOC441124	NA	chr1:224139778-224141141	inter
CUST_49517_PI429285431	2.057665	A	1.8504753	A	1.15443720450867	0	lncRNA	53309-1_{1..2582}	hg19_lincRNAsTranscripts_TCONS_l2_00024691 range=chr6:29113638-29128996 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024691 range=chr6:29113638-29128996 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 29113638	 29116219	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30"	NA	inter
CUST_47235_PI429285431	12.228191	P	12.045616	P	1.13490772320892	0	lncRNA	51310-1_{1..342}	"gi|397139940|ref|XR_132675.2| PREDICTED: Homo sapiens uncharacterized LOC100652902 (LOC100652902), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139940|ref|XR_132675.2| PREDICTED: Homo sapiens uncharacterized LOC100652902 (LOC100652902), misc_RNA"	NA	NA	NA	NA	NA	XR_132675.2	NA	NA	NA	"hg19_refFlat_RPL41:range=chr12:56510572-565113085'pad=0,hg19_refFlat_RPL41:range=chr12:56510572-565113085'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80"	NA	Unknown
CUST_26008_PI429285431	2.5710175	A	3.1500196	A	0.669426654064996	0	lncRNA	27527-1_{1..397}	lnc-ANGPTL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANGPTL2-1:1	chr9	129984083	129984479	-	lnc-ANGPTL2-1	lnc-ANGPTL2-1:1	ENSG00000228487.1	RP13-225O21.2	RALGPS1	NA	chr9:129974083-129985445	inner
CUST_7961_PI429285431	0.9177631	A	0.9052591	A	1.00870478051002	0	lncRNA	9573-1_{1..999}	lnc-TFAP2A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TFAP2A-2:1	chr6	 10434875	 10435873	-	lnc-TFAP2A-2	lnc-TFAP2A-2:1	ENSG00000183674	XLOC_005602	NA	NA	NA	inter
CUST_8622_PI429285431	0.902617	A	0.89485615	A	1.00539390630909	0	lncRNA	10174-1_{1..1519}	lnc-AK4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AK4-1:1	chr1	 65667854	 65669372	+	lnc-AK4-1	lnc-AK4-1:1	ENSG00000248905	ENST00000500320	AK4	"hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.11;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80chr1:65657854-65678079"	NA	inner
CUST_31625_PI429285431	0.90631586	A	0.89915824	A	1.00497361167098	0	lncRNA	33380-2_{3001..3187}	n338148|BC043440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|537|NULL|-1.0734800|-0.2979032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338148|BC043440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|537|NULL|-1.0734800|-0.2979032	chr15	 94451631	 94451817	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13671_PI429285431	1.1084716	A	1.7131923	A	0.657598676258405	0	lncRNA	15308-1_{1..331}	lnc-AC005008.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC005008.2.1-2:1	chr7	 82991467	 82991797	+	lnc-AC005008.2.1-2	lnc-AC005008.2.1-2:1	XLOC_006158	linc-GRM3-3	SEMA3E	NA	chr7:82993222-83001582	inter
CUST_2392_PI429285431	6.0730653	P	6.3188105	P	0.843380049738455	0	lncRNA	2385-1_{1..248}	"transcript_id ""ENST00000523781.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523781.1"" | genecode_v17"	chr5	150537667	150537914	-	ENSG00000254298.1	ENST00000523781.1	CTB-17P3.4	CTB-17P3.4-001	ANXA6	NA	chr5:150527667-150537443	inter
CUST_36568_PI429285431	4.5235853	P	4.520064	P	1.00244376029331	0	lncRNA	37764-1_{1..873}	n345066|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_615|NULL|-1.3071500|-0.2818454	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345066|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_615|NULL|-1.3071500|-0.2818454	chrX	 50906566	 50907438	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005098	0.9150992	A	0.90163636	A	1.00937540592977	0	lncRNA	TCONS_00012378	NA	NA	NA	NA	XLOC_005946	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005946), lincRNA [TCONS_00012378]"	chr6:170481579-170481520	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012378	TCONS_00012378	chr6	170481520	170481579	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46568_PI429285431	6.4850326	P	7.3890204	P	0.534407514747754	0	lncRNA	50752-1_{1..1488}	"gi|389886543|ref|NR_051985.1| Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 9 (DDX11L9), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|389886543|ref|NR_051985.1| Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 9 (DDX11L9), transcript variant 2, non-coding RNA"	Chr15	102516761	102518248	-	100288486	NR_051985.1	NA	NA	NA	NA	NA	inter
CUST_42236_PI429285431	9.642568	P	9.2316	P	1.3295776168794	0	lncRNA	44370-1_{1..71}	ENST00000387314 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:577:647:1 gene:ENSG00000210049 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000387314 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:577:647:1 gene:ENSG00000210049 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	chrMT	      577	      647	+	ENSG00000210049	ENST00000387314	NA	NA	NA	NA	NA	Unknown
CUST_49028_PI429285431	8.939832	P	9.072596	P	0.912082354242784	0	lncRNA	52857-1_{1..1010}	hg19_lincRNAsTranscripts_TCONS_l2_00021592 range=chr4:57396775-57450744 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021592 range=chr4:57396775-57450744 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 57396775	 57397784	+	NA	NA	NA	NA	ARL9	NA	chr4:57386775-57390058	inner
CUST_25737_PI429285431	0.90492594	A	1.1827972	A	0.824807147625491	0	lncRNA	27263-1_{1..623}	lnc-C5orf43-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C5orf43-4:2	chr5	 60983672	 60984294	-	lnc-C5orf43-4	lnc-C5orf43-4:2	ENSG00000248529.1	RP11-2O17.2	C5orf64	NA	chr5:60973672-60993740	inner
CUST_23946_PI429285431	3.1575556	A	3.422581	P	0.832184083200853	0	lncRNA	25503-1_{1..579}	lnc-AP002478.1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP002478.1-5:2	chr18	  4293160	  4293738	+	lnc-AP002478.1-5	lnc-AP002478.1-5:2	ENSG00000261520.1	RP11-138C24.1	DLGAP1	NA	chr18:4283160-4303469	inner
LNCA_21_P0009277	2.203109	A	0.90366954	A	2.46133232289442	0	lncRNA	TCONS_00025500	NA	NA	NA	NA	XLOC_012315	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012315), lincRNA [TCONS_00025500]"	chr17:75250040-75250099	hs|17q25.2	Agilent_HUMAN_G3V2	TCONS_00025500	TCONS_00025500	chr17	 75250040	 75250099	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45583_PI429285431	4.4754453	P	3.744352	P	1.6598965142655	0	lncRNA	49976-1_{1..3000}	"gi|392976404|ref|NR_072978.1| Homo sapiens BMS1 pseudogene 2 (BMS1P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392976404|ref|NR_072978.1| Homo sapiens BMS1 pseudogene 2 (BMS1P2), non-coding RNA"	Chr10	 47225563	 47228562	-	414216	NR_072978.1	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60"	NA	inter
CUST_31450_PI429285431	1.5710573	A	0.9070583	A	1.58446852357967	0	lncRNA	33217-1_{1..1761}	n337919|BC032417|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|303|NULL|-0.8655970|-0.2082958	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337919|BC032417|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|303|NULL|-0.8655970|-0.2082958	chr1	 48693559	 48695319	-	NA	NA	NA	NA	SLC5A9	"hg19_refFlat_SLC5A9:range=chr1:48688409-487132155'pad=0,hg19_refFlat_SLC5A9:range=chr1:48688409-487132155'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60chr1:48688357-48705233"	NA	inner
CUST_39701_PI429285431	6.766211	P	7.0582724	P	0.816734230784741	0	lncRNA	40638-1_{1..2125}	n405552|NR_002601|lncRNA|Homosapiens||RefGeneNoncode|NR_002601||4.6587100|-0.3032124	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405552|NR_002601|lncRNA|Homosapiens||RefGeneNoncode|NR_002601||4.6587100|-0.3032124	chr1	171106878	171109002	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51274_PI429285431	7.143328	P	7.761679	P	0.651415069592587	0	lncRNA	54880-1_{1..652}	hg19_lincRNAsTranscripts_TCONS_l2_00008515 range=chr15:29967514-29973149 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008515 range=chr15:29967514-29973149 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 29967514	 29968165	+	NA	NA	NA	NA	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_38458_PI429285431	3.8121543	P	3.7206502	P	1.06548043372991	0	lncRNA	39478-1_{1..1749}	n382906|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002cqb.1||-1.0887100|-0.2380966	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382906|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002cqb.1||-1.0887100|-0.2380966	chr16	  2390922	  2392670	+	NA	NA	NA	NA	ABCA3	NA	chr16:2380922-2390747	inter
CUST_32140_PI429285431	0.89731896	A	0.8934543	A	1.002682369315	0	lncRNA	33840-1_{1..2226}	n338707|AK023477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1127|NULL|-0.8872910|-0.2996496	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338707|AK023477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1127|NULL|-0.8872910|-0.2996496	chr13	 47151542	 47153767	+	NA	NA	NA	NA	LRCH1	NA	chr13:47141542-47163768	inner
CUST_47579_PI429285431	1.9005283	A	2.1963773	A	0.814592818148512	0	lncRNA	51583-1_{1..1089}	"gi|310124198|ref|XR_110617.1| PREDICTED: Homo sapiens chromosome X open reading frame 24 (CXorf24), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124198|ref|XR_110617.1| PREDICTED: Homo sapiens chromosome X open reading frame 24 (CXorf24), misc_RNA"	NA	NA	NA	NA	NA	XR_110617.1	NA	NA	NA	NA	NA	Unknown
CUST_36211_PI429285431	2.707386	A	2.9647691	A	0.836604057423848	0	lncRNA	37466-2_{3001..5497}	n344755|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_304|NULL|-1.3597900|-0.3098663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344755|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_304|NULL|-1.3597900|-0.3098663	chr7	 30566993	 30569489	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41857_PI429285431	5.4854884	P	5.720713	P	0.849552729746187	0	lncRNA	43509-1_{1..94}	ENST00000385193 ncrna:miRNA chromosome:GRCh37:17:30677128:30677221:1 gene:ENSG00000207928 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385193 ncrna:miRNA chromosome:GRCh37:17:30677128:30677221:1 gene:ENSG00000207928 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 30677128	 30677221	+	ENSG00000207928	ENST00000385193	NA	NA	ZNF207	NA	chr17:30677157-30687221	inner
CUST_16970_PI429285431	1.5547004	A	0.90231174	A	1.57176840848663	0	lncRNA	18682-1_{1..1171}	lnc-SDSL-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SDSL-6:2	chr12	114532913	114534083	+	lnc-SDSL-6	lnc-SDSL-6:2	XLOC_009888	linc-MAP1LC3B2-10	NA	NA	NA	inter
CUST_50844_PI429285431	1.8550317	A	2.0943465	A	0.84714756486384	0	lncRNA	54489-1_{1..218}	hg19_lincRNAsTranscripts_TCONS_l2_00004592 range=chr11:66177823-66178527 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004592 range=chr11:66177823-66178527 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 66177823	 66178040	+	NA	NA	NA	NA	NPAS4	NA	chr11:66188475-66188527	inter
CUST_2611_PI429285431	1.0233347	A	0.91193813	A	1.08027346608233	0	lncRNA	2598-1_{1..327}	"transcript_id ""ENST00000427157.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427157.1"" | genecode_v17"	chr6	113944737	113945063	-	ENSG00000230943.1	ENST00000427157.1	RP11-367G18.1	RP11-367G18.1-001	NA	NA	NA	inter
CUST_17832_PI429285431	0.90219706	A	0.9036588	A	0.99898731215507	0	lncRNA	19567-1_{1..207}	lnc-AIPL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AIPL1-1:1	chr17	  6265079	  6265285	-	lnc-AIPL1-1	lnc-AIPL1-1:1	XLOC_012368	linc-NLRP1-1	NA	NA	NA	inter
CUST_47490_PI429285431	4.8194366	P	5.1555653	P	0.792164140360811	0	lncRNA	51508-2_{3001..5058}	"gi|397139768|ref|XR_109755.2| PREDICTED: Homo sapiens uncharacterized LOC100507657 (LOC100507657), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139768|ref|XR_109755.2| PREDICTED: Homo sapiens uncharacterized LOC100507657 (LOC100507657), misc_RNA"	Chr22	 27709612	 27711669	+	100507657	XR_109755.3	NA	NA	NA	NA	NA	inter
CUST_24350_PI429285431	1.8914852	A	2.8765192	A	0.505213816726972	0	lncRNA	25902-1_{1..569}	lnc-MRPS22-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPS22-1:4	chr3	139170843	139171411	+	lnc-MRPS22-1	lnc-MRPS22-1:4	ENSG00000248932.1	RP11-319G6.1	RBP2	NA	chr3:139171726-139181082	inter
CUST_7696_PI429285431	1.2855968	A	1.4701102	A	0.879945818769459	0	lncRNA	9329-1_{1..3000}	lnc-ARL13A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARL13A-1:1	chrX	100261611	100264610	+	lnc-ARL13A-1	lnc-ARL13A-1:1	ENSG00000250499	XLOC_008024	TRMT2B	"hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.60;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.31;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chrX:100264334-100272956"	NA	inter
CUST_21916_PI429285431	1.1516829	A	1.4761382	A	0.798599846621126	0	lncRNA	23525-1_{1..924}	lnc-IL3RA-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL3RA-1:4	chrX	  1534088	  1535011	+	lnc-IL3RA-1	lnc-IL3RA-1:4	ENSG00000236017.2	ASMTL-AS1	ASMTL	"hg19_refFlat_ASMTL:range=chrX:1522162-15611295'pad=0,hg19_refFlat_ASMTL:range=chrX:1522162-15611295'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_ASMTL:range=chrY:1472162-15217335'pad=0,hg19_refFlat_ASMTL:range=chrY:1472162-15217335'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_ASMTL:range=chrX:1522162-15717335'pad=0,hg19_refFlat_ASMTL:range=chrX:1522162-15717335'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_ASMTL:range=chrY:1472162-15111295'pad=0,hg19_refFlat_ASMTL:range=chrY:1472162-15111295'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30chrX:1524088-1544314"	NA	inner
CUST_46542_PI429285431	0.921015	A	0.9201659	A	1.0005887245013	0	lncRNA	50728-1_{1..3000}	"gi|212274344|ref|NR_015411.1| Homo sapiens uncharacterized LOC254559 (LOC254559), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|212274344|ref|NR_015411.1| Homo sapiens uncharacterized LOC254559 (LOC254559), non-coding RNA"	Chr15	 89921273	 89924272	+	254559	NR_015411.1	NA	NA	NA	NA	NA	inter
CUST_34568_PI429285431	4.0671787	P	4.1888576	P	0.919117428276786	0	lncRNA	36028-1_{1..3000}	n341450|AK096356|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3920|NULL|-0.1168740|-0.1398074	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341450|AK096356|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3920|NULL|-0.1168740|-0.1398074	chr13	114253447	114256446	-	NA	NA	NA	NA	TFDP1	NA	chr13:114243447-114266824	inner
CUST_10698_PI429285431	0.9135379	A	1.1552823	A	0.845722109354588	0	lncRNA	12233-1_{1..2760}	lnc-DHRS2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHRS2-3:2	chr14	 24166097	 24168856	+	lnc-DHRS2-3	lnc-DHRS2-3:2	XLOC_010769	linc-DHRS4-2	NA	NA	NA	inter
CUST_5417_PI429285431	1.0667651	A	0.90381706	A	1.11957256548375	0	lncRNA	5351-1_{1..272}	"transcript_id ""ENST00000566684.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566684.1"" | genecode_v17"	chr16	  5265395	  5265666	-	ENSG00000261811.1	ENST00000566684.1	RP11-382N13.2	RP11-382N13.2-001	NA	NA	NA	inter
CUST_33128_PI429285431	3.1111262	A	3.4273891	A	0.803147627119038	0	lncRNA	34725-1_{1..3000}	n339818|AK124319|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2265|NULL|0.3534880|-0.2769077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339818|AK124319|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2265|NULL|0.3534880|-0.2769077	chr18	 24487308	 24490307	-	NA	NA	NA	NA	CHST9	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80chr18:24495595-24500602"	NA	inter
CUST_13221_PI429285431	0.9141382	A	0.9049414	A	1.00639509786384	0	lncRNA	14849-1_{1..235}	lnc-NUAK1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUAK1-3:1	chr12	106404753	106404987	-	lnc-NUAK1-3	lnc-NUAK1-3:1	XLOC_010185	linc-APPL2-3	NUAK1	NA	chr12:106409591-106414785	inter
CUST_49958_PI429285431	10.9306345	P	11.072542	P	0.90632004612407	0	lncRNA	53707-1_{1..1027}	hg19_lincRNAsTranscripts_TCONS_l2_00026918 range=chr7:138087706-138089261 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026918 range=chr7:138087706-138089261 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	138087706	138088732	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32896_PI429285431	1.3985841	A	0.9566463	A	1.35842771636716	0	lncRNA	34523-1_{1..3000}	n339566|D87448|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2008|NULL|14.6602000|-0.3807615	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339566|D87448|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2008|NULL|14.6602000|-0.3807615	chr3	133319449	133322448	-	NA	NA	NA	NA	TOPBP1	NA	chr3:133319449-133380737	inner
CUST_10595_PI429285431	0.9190363	A	0.9202263	A	0.999175494946376	0	lncRNA	12125-1_{1..574}	lnc-BMX-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-BMX-1:1	chrX	 15639135	 15639708	+	lnc-BMX-1	lnc-BMX-1:1	XLOC_007933	linc-CA5B	TMEM27	NA	chrX:15645441-15649607	inter
CUST_40948_PI429285431	0.9310456	A	1.1426282	A	0.863589375795567	0	lncRNA	41627-1_{1..3000}	n410935|NR_038397|lncRNA|Homosapiens||RefGeneNoncode|NR_038397||1.7563300|-0.4213743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n410935|NR_038397|lncRNA|Homosapiens||RefGeneNoncode|NR_038397||1.7563300|-0.4213743	chr1	172107723	172110722	-	NA	NA	NA	NA	DNM3	NA	chr1:172097723-172123975	inner
CUST_11713_PI429285431	5.7914114	P	6.284607	P	0.710449692583721	0	lncRNA	13291-1_{1..973}	lnc-AMOTL2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AMOTL2-2:2	chr3	134046056	134047028	-	lnc-AMOTL2-2	lnc-AMOTL2-2:2	XLOC_003261	linc-RYK	NA	NA	NA	inter
CUST_39452_PI429285431	3.5264313	P	3.3955235	P	1.09498249023025	0	lncRNA	40396-1_{1..2338}	n386944|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vbu.1||3.1798800|-0.1124466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386944|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vbu.1||3.1798800|-0.1124466	chr16	 22430866	 22433203	-	NA	NA	NA	NA	NA	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_SMG1:range=chr16:18820891-189373635'pad=0,hg19_refFlat_SMG1:range=chr16:18820891-189373635'pad=0 3'pad=0 strand=- repeatMasking=none,-100.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40"	NA	inter
CUST_36857_PI429285431	4.3497424	P	5.2505245	P	0.53559630022255	0	lncRNA	38017-1_{1..1907}	n345325|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_874|NULL|-1.5247800|-0.2342406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345325|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_874|NULL|-1.5247800|-0.2342406	chr16	  3175529	  3177435	+	NA	NA	NA	NA	CASP14L	NA	chr16:3194244-3194830	inter
CUST_49548_PI429285431	11.244267	P	11.896599	P	0.636251033607018	0	lncRNA	53339-2_{3001..3831}	hg19_lincRNAsTranscripts_TCONS_l2_00024809 range=chr6:69339822-69344886 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024809 range=chr6:69339822-69344886 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 69342822	 69343652	-	NA	NA	NA	NA	BAI3	NA	chr6:69345632-69354886	inter
CUST_36780_PI429285431	0.9231214	A	0.9216397	A	1.00102756375969	0	lncRNA	37952-1_{1..1162}	n345259|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_808|NULL|-1.4183400|-0.2913364	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345259|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_808|NULL|-1.4183400|-0.2913364	chr14	 56777597	 56778758	+	NA	NA	NA	NA	PELI2	NA	chr14:56767597-56768031	inter
CUST_32137_PI429285431	1.136559	A	0.9015452	A	1.17691799489291	0	lncRNA	33837-1_{1..2843}	n338704|AK096235|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1124|NULL|-0.9791070|-0.3119583	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338704|AK096235|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1124|NULL|-0.9791070|-0.3119583	chr13	 46693991	 46696833	+	NA	NA	NA	NA	LCP1	NA	chr13:46700058-46706834	inter
CUST_4405_PI429285431	1.4252926	A	1.4373957	A	0.99164586174748	0	lncRNA	4355-1_{1..524}	"transcript_id ""ENST00000553177.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553177.1"" | genecode_v17"	chr12	111374389	111374912	+	ENSG00000185847.3	ENST00000553177.1	RP1-46F2.2	RP1-46F2.2-003	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10"	NA	inter
CUST_42560_PI429285431	5.781848	P	5.928565	P	0.903303685413821	0	lncRNA	45380-1_{1..201}	ENST00000580726 proj_ncrna:snoRNA chromosome:GRCh37:HG1211_PATCH:46480058:46480258:1 gene:ENSG00000265733 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580726 proj_ncrna:snoRNA chromosome:GRCh37:HG1211_PATCH:46480058:46480258:1 gene:ENSG00000265733 gene_biotype:snoRNA transcript_biotype:snoRNA	chrHG1211_PATCH	 46480058	 46480258	+	ENSG00000265733	ENST00000580726	NA	NA	NA	NA	NA	Unknown
CUST_30938_PI429285431	2.2747984	A	1.3672116	A	1.87590504106444	0	lncRNA	32726-1_{1..402}	n337011|DQ088985|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341103|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341103|1.4354200|-0.3389432	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337011|DQ088985|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341103|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341103|1.4354200|-0.3389432	chr15	 93486170	 93486571	+	NA	NA	NA	NA	CHD2	NA	chr15:93476170-93499398	inner
LNCA_21_P0008280	0.9902663	A	0.9252101	A	1.0461256906907	0	lncRNA	ENST00000557526	NA	AK124327	NA	Hs.562528	XLOC_011081	NA	ENST00000557526	THC2640624	NA	"BROAD Institute lincRNA (XLOC_011081), lincRNA [TCONS_00022377]"	chr14:77535582-77535523	hs|14q24.3	Agilent_HUMAN_G3V2	ENST00000557526	ENST00000557526	chr14	 77535523	 77535582	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43844_PI429285431	2.889729	A	3.488083	P	0.660507111604131	0	lncRNA	48567-1_{1..2154}	"gi|224586797|ref|NR_027258.1| Homo sapiens prolyl-tRNA synthetase associated domain containing 1, pseudogene (PRORSD1P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224586797|ref|NR_027258.1| Homo sapiens prolyl-tRNA synthetase associated domain containing 1, pseudogene (PRORSD1P), non-coding RNA"	Chr2	 55509455	 55511608	+	344405	NR_027258.1	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90"	NA	inter
CUST_21494_PI429285431	1.2216954	A	1.3466	A	0.91706468323998	0	lncRNA	23112-1_{1..563}	lnc-RP11-503N18.3.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-503N18.3.1-3:1	chr4	  2320724	  2321286	+	lnc-RP11-503N18.3.1-3	lnc-RP11-503N18.3.1-3:1	ENSG00000251148.1	RP11-478C1.7	ZFYVE28	NA	chr4:2310724-2330816	inner
CUST_20587_PI429285431	7.2075305	P	7.0608544	P	1.10701602000446	0	lncRNA	22227-1_{1..3000}	lnc-CAPN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CAPN3-1:1	chr15	 42703945	 42706944	+	lnc-CAPN3-1	lnc-CAPN3-1:1	ENSG00000258461.1	RP11-164J13.1	ZFP106	NA	chr15:42705021-42714515	inner
CUST_6691_PI429285431	3.921672	P	3.6339602	P	1.2207026346277	0	lncRNA	6640-1_{1..480}	"transcript_id ""ENST00000444436.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444436.1"" | genecode_v17"	chr20	 38414363	 38414842	+	ENSG00000229976.1	ENST00000444436.1	RP5-1031J8.1	RP5-1031J8.1-001	NA	NA	NA	inter
CUST_7889_PI429285431	1.910478	A	0.9236605	A	1.98180841317415	0	lncRNA	9506-1_{1..383}	lnc-NBN-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NBN-1:4	chr8	 90769273	 90769655	-	lnc-NBN-1	lnc-NBN-1:4	ENSG00000251136	RP11-37B2.1	RIPK2	NA	chr8:90769975-90779422	inter
CUST_14529_PI429285431	1.3142447	A	1.5822169	A	0.830486026980247	0	lncRNA	16197-1_{1..442}	lnc-SOD3-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOD3-3:2	chr4	 23783872	 23784313	+	lnc-SOD3-3	lnc-SOD3-3:2	XLOC_003474	linc-SOD3-2	PPARGC1A	NA	chr4:23793644-23794183	inter
CUST_28055_PI429285431	0.89622885	A	0.90009385	A	0.997324571502294	0	lncRNA	29673-1_{1..610}	n325321|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326185|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326185|-1.3053100|-0.2064452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325321|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326185|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326185|-1.3053100|-0.2064452	chr2	 45003989	 45004598	-	NA	NA	NA	NA	CAMKMT	NA	chr2:44993989-44999729	inter
CUST_35214_PI429285431	2.9244003	A	2.7802706	A	1.10506382688667	0	lncRNA	36614-1_{1..1679}	n342200|AK093192|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4690|NULL|-0.9106810|-0.2356304	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342200|AK093192|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4690|NULL|-0.9106810|-0.2356304	chrX	  9371514	  9373192	-	NA	NA	NA	NA	TBL1X	NA	chrX:9370789-9383193	inter
LNCA_21_P0014817	0.9187143	A	0.9209587	A	0.998445509941195	0	lncRNA	XR_132654	XR_132654	XR_132654	NA	Hs.374015	LOC100652909	uncharacterized LOC100652909	NA	THC2678262	NA	"PREDICTED: Homo sapiens hypothetical LOC100652909 (LOC100652909), miscRNA [XR_132654]"	chr19:35382995-35382936	hs|19q13.11	Agilent_HUMAN_G3V2	XR_132654	XR_132654	chr19	 35382936	 35382995	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001613	6.271504	P	6.4824324	P	0.86398106514469	0	lncRNA	TCONS_00001780	NA	NA	NA	NA	XLOC_001166	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001166), lincRNA [TCONS_00001780]"	chr1:205251660-205251601	hs|1q32.1	Agilent_HUMAN_G3V2	TCONS_00001780	TCONS_00001780	chr1	205251601	205251660	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28333_PI429285431	0.9041571	A	1.1307282	A	0.854663786828017	0	lncRNA	29978-1_{1..497}	n325638|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045724|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045724|-1.0876200|-0.3558084	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325638|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045724|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045724|-1.0876200|-0.3558084	chr13	105826911	105827407	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39863_PI429285431	3.13332	P	3.467492	P	0.793239266524968	0	lncRNA	40761-1_{1..2157}	n406521|NR_024033|lncRNA|Homosapiens||RefGeneNoncode|NR_024033||10.0751000|-0.1039822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406521|NR_024033|lncRNA|Homosapiens||RefGeneNoncode|NR_024033||10.0751000|-0.1039822	chrX	155227245	155229401	+	NA	NA	NA	NA	IL9R	NA	chrX:155227246-155240482	inner
CUST_16799_PI429285431	5.5481243	P	5.642149	P	0.936905406225595	0	lncRNA	18507-1_{1..303}	lnc-ZNF487P-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF487P-1:2	chr10	 43917118	 43917420	+	lnc-ZNF487P-1	lnc-ZNF487P-1:2	XLOC_008467	linc-ZNF485-2	NA	NA	NA	inter
CUST_43728_PI429285431	1.8805082	A	1.936334	A	0.962043610799543	0	lncRNA	48472-1_{1..1906}	"gi|374093228|ref|NR_046189.1| Homo sapiens long intergenic non-protein coding RNA 538 (LINC00538), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374093228|ref|NR_046189.1| Homo sapiens long intergenic non-protein coding RNA 538 (LINC00538), non-coding RNA"	Chr1	214098092	214099997	+	100861504	NR_046189.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0009829	2.4044132	A	0.9239305	A	2.79042080150569	0	lncRNA	XR_109648	XR_109648	XR_109648	NA	Hs.407172	LOC100505515	uncharacterized LOC100505515	ENST00000432244	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505515 (LOC100505515), miscRNA [XR_109648]"	chr20:12932216-12932275	hs|20p12.1	Agilent_HUMAN_G3V2	XR_109648	XR_109648	chr20	 12932216	 12932275	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48472_PI429285431	4.4404116	P	4.4643645	P	0.983534183170967	0	lncRNA	52324-1_{1..365}	hg19_lincRNAsTranscripts_TCONS_l2_00001809 range=chr1:224149535-224150120 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001809 range=chr1:224149535-224150120 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	224149535	224149899	-	NA	NA	NA	NA	LOC441124	NA	chr1:224139535-224141141	inter
CUST_21930_PI429285431	1.3300902	A	1.1219782	A	1.15517546021336	0	lncRNA	23538-1_{1..558}	lnc-SYN3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SYN3-4:1	chr22	 34120789	 34121346	-	lnc-SYN3-4	lnc-SYN3-4:1	ENSG00000232081.1	LARGE-IT1	LARGE	NA	chr22:34110789-34130898	inner
CUST_12867_PI429285431	7.366272	P	7.6906753	P	0.79862863159595	0	lncRNA	14494-1_{1..545}	lnc-SMC1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMC1B-1:1	chr22	 45844252	 45844796	-	lnc-SMC1B-1	lnc-SMC1B-1:1	XLOC_014396	linc-SMC1B-3	NA	NA	NA	inter
CUST_31668_PI429285431	0.8999686	A	1.5735493	A	0.626948697989833	0	lncRNA	33417-2_{3001..6000}	n338192|AB007959|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|583|NULL|-1.1488300|-0.2795876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338192|AB007959|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|583|NULL|-1.1488300|-0.2795876	chr1	116383466	116386465	+	NA	NA	NA	NA	NHLH2	"hg19_refFlat_NHLH2:range=chr1:116380586-1163809935'pad=0,hg19_refFlat_NHLH2:range=chr1:116380586-1163809935'pad=0 3'pad=0 strand=- repeatMasking=none,-103.90;hg19_refFlat_NHLH1:range=chr1:160340522-1603409235'pad=0,hg19_refFlat_NHLH1:range=chr1:160340522-1603409235'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10chr1:116378998-116383747"	NA	inner
LNCA_32_P100641	5.287023	P	5.6300898	P	0.788363670213888	0	lncRNA	XR_109584	XR_109584	XR_109584	100128139	NA	LOC100128139	uncharacterized LOC100128139	NA	THC2654357	NA	"PREDICTED: Homo sapiens hypothetical LOC100128139 (LOC100128139), miscRNA [XR_109584]"	chr19:22716218-22716277	hs|19p12	Agilent_HUMAN_G3V2	XR_109584	XR_109584	chr19	 22716218	 22716277	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34603_PI429285431	0.90178424	A	0.9004688	A	1.00091220933728	0	lncRNA	36058-1_{1..2383}	n341484|AK025743|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3954|NULL|-0.8067100|-0.1784088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341484|AK025743|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3954|NULL|-0.8067100|-0.1784088	chr8	 37455007	 37457389	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18391_PI429285431	1.8046167	A	1.4522787	A	1.27662782694622	0	lncRNA	20116-1_{1..950}	lnc-GREM2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GREM2-6:1	chr1	239882250	239883199	-	lnc-GREM2-6	lnc-GREM2-6:1	ENSG00000233355	RP11-343J24.1	CHRM3	NA	chr1:239872250-239892419	inner
CUST_2240_PI429285431	0.9073202	A	0.90641695	A	1.00062628122308	0	lncRNA	2232-1_{1..558}	"transcript_id ""ENST00000508885.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508885.1"" | genecode_v17"	chr5	 87836649	 87837206	-	ENSG00000245526.3	ENST00000508885.1	LINC00461	LINC00461-011	NA	NA	NA	inter
CUST_50297_PI429285431	0.9227264	A	0.91905123	A	1.00255068118985	0	lncRNA	54016-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00029454 range=chr9:90750371-90755756 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029454 range=chr9:90750371-90755756 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 90750371	 90753370	-	NA	NA	NA	NA	FAM75C2	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-19.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10chr9:90744220-90749900"	NA	inter
CUST_13187_PI429285431	0.91511685	A	1.4448591	A	0.692678476027546	0	lncRNA	14814-1_{1..1013}	lnc-ZNF507-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF507-2:1	chr19	 32595440	 32596452	+	lnc-ZNF507-2	lnc-ZNF507-2:1	XLOC_013040	linc-ZNF507-2	NA	NA	NA	inter
CUST_1247_PI429285431	1.9235476	A	0.89696085	A	2.03719876817558	0	lncRNA	1239-1_{1..1972}	"transcript_id ""ENST00000419101.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000419101.2"" | genecode_v17"	chr2	219840352	219842323	+	ENSG00000236445.2	ENST00000419101.2	LINC00608	LINC00608-001	FEV	NA	chr2:219845809-219850379	inter
CUST_5282_PI429285431	2.735474	P	1.4632988	A	2.41525447218442	0	lncRNA	5222-1_{1..646}	"transcript_id ""ENST00000567231.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567231.1"" | genecode_v17"	chr15	 86648271	 86648916	-	ENSG00000260477.2	ENST00000567231.1	RP11-553E24.2	RP11-553E24.2-004	NA	NA	NA	inter
CUST_6132_PI429285431	0.90033746	A	0.902544	A	0.998471712043468	0	lncRNA	6058-1_{1..833}	"transcript_id ""ENST00000582108.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582108.1"" | genecode_v17"	chr18	 24916657	 24917489	-	ENSG00000264151.1	ENST00000582108.1	RP11-739N10.1	RP11-739N10.1-004	NA	NA	NA	inter
CUST_45843_PI429285431	2.1460488	A	2.887064	A	0.598318177799267	0	lncRNA	50175-1_{1..1760}	"gi|379056365|ref|NR_046411.1| Homo sapiens polymerase (DNA-directed), delta 4, accessory subunit (POLD4), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|379056365|ref|NR_046411.1| Homo sapiens polymerase (DNA-directed), delta 4, accessory subunit (POLD4), transcript variant 3, non-coding RNA"	Chr11	 67118236	 67119995	-	57804	NR_046411.1	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30"	NA	inter
CUST_2382_PI429285431	3.5473933	P	3.6709466	P	0.917924054080379	0	lncRNA	2375-1_{1..568}	"transcript_id ""ENST00000515296.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515296.1"" | genecode_v17"	chr5	139064230	139064797	+	ENSG00000249526.1	ENST00000515296.1	CTB-35F21.1	CTB-35F21.1-001	CXXC5	NA	chr5:139054230-139062680	inter
CUST_8373_PI429285431	0.9165683	A	0.9079015	A	1.00602544840665	0	lncRNA	9951-1_{1..955}	lnc-SLC6A20-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC6A20-1:1	chr3	 45730512	 45731466	-	lnc-SLC6A20-1	lnc-SLC6A20-1:1	ENSG00000230530	RP11-697K23.1	SACM1L	NA	chr3:45730754-45740626	inter
CUST_29681_PI429285431	4.166845	P	4.51685	P	0.784581378740186	0	lncRNA	31443-1_{1..341}	n333334|AY255552|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085516|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085516|0.5434650|-0.1055713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333334|AY255552|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085516|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085516|0.5434650|-0.1055713	chr6	 46826454	 46826794	-	NA	NA	NA	NA	GPR116	NA	chr6:46820242-46836795	inner
CUST_52036_PI429285431	0.9164742	A	0.9190699	A	0.998202415457313	0	lncRNA	55566-1_{1..474}	hg19_lincRNAsTranscripts_TCONS_l2_00017172 range=chr21:23781810-23847240 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017172 range=chr21:23781810-23847240 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 23781810	 23782283	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2700_PI429285431	1.512562	A	0.8941336	A	1.53520189770311	0	lncRNA	2686-1_{1..448}	"transcript_id ""ENST00000451328.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451328.1"" | genecode_v17"	chr6	164529652	164530099	-	ENSG00000230627.1	ENST00000451328.1	RP1-155D22.1	RP1-155D22.1-001	NA	NA	NA	inter
CUST_22394_PI429285431	2.6161363	A	2.2515888	A	1.28747774993839	0	lncRNA	23984-1_{1..816}	lnc-OR52B2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR52B2-1:1	chr11	  6206521	  6207336	-	lnc-OR52B2-1	lnc-OR52B2-1:1	ENSG00000254444.1	RP11-290F24.3	NA	"hg19_refFlat_OR56B4:range=chr11:6129009-61299685'pad=0,hg19_refFlat_OR56B4:range=chr11:6129009-61299685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90"	NA	inter
CUST_9740_PI429285431	0.91888285	A	0.91624737	A	1.00182844510233	0	lncRNA	11257-1_{1..634}	lnc-ZNF729-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF729-1:1	chr19	 22467343	 22467976	+	lnc-ZNF729-1	lnc-ZNF729-1:1	XLOC_013011	linc-ZNF492-4	ZNF729	NA	chr19:22469252-22477809	inter
CUST_13265_PI429285431	4.0399714	A	3.4095933	A	1.54797063090154	0	lncRNA	14896-1_{1..897}	lnc-MTOR-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTOR-2:1	chr1	 11434042	 11434938	-	lnc-MTOR-2	lnc-MTOR-2:1	XLOC_000702	linc-MTOR-2	NA	NA	NA	inter
CUST_15668_PI429285431	7.718098	P	8.016246	P	0.813295761270226	0	lncRNA	17356-1_{1..444}	lnc-PLCXD1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLCXD1-3:2	chrX	   398339	   398782	+	lnc-PLCXD1-3	lnc-PLCXD1-3:2	XLOC_007909	linc-SHOX-2	NA	NA	NA	inter
CUST_31_PI429285431	1.5894496	A	2.8098888	A	0.429152051467676	0	lncRNA	30-1_{1..611}	"transcript_id ""ENST00000523550.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523550.1"" | genecode_v17"	chr8	122896963	122897573	+	ENSG00000254018.1	ENST00000523550.1	RP11-785H20.1	RP11-785H20.1-001	NA	NA	NA	inter
CUST_12273_PI429285431	6.8459396	P	7.1628847	P	0.802767936489338	0	lncRNA	13882-1_{1..447}	lnc-LYPD6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYPD6-2:2	chr2	150704423	150704869	+	lnc-LYPD6-2	lnc-LYPD6-2:2	XLOC_001703	linc-TNFAIP6-6	NA	NA	NA	inter
CUST_44467_PI429285431	0.93057597	A	0.90990484	A	1.01443127522298	0	lncRNA	49071-1_{1..2459}	"gi|374532788|ref|NR_046264.1| Homo sapiens uncharacterized LOC651430 (FLJ38576), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374532788|ref|NR_046264.1| Homo sapiens uncharacterized LOC651430 (FLJ38576), non-coding RNA"	Chr4	187110186	187112644	-	651430	NR_046264.1	NA	NA	NA	NA	NA	inter
CUST_7776_PI429285431	1.8363832	A	2.6375983	A	0.573865639501187	0	lncRNA	9401-2_{3001..5871}	lnc-TSTA3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSTA3-2:1	chr8	144740762	144743632	-	lnc-TSTA3-2	lnc-TSTA3-2:1	ENSG00000245809	ENST00000501748	ZNF623	"hg19_refFlat_ZNF623:range=chr8:144732043-1447336535'pad=0,hg19_refFlat_ZNF623:range=chr8:144732043-1447336535'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.00;hg19_refFlat_ZNF623:range=chr8:144732163-1447336535'pad=0,hg19_refFlat_ZNF623:range=chr8:144732163-1447336535'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70chr8:144727762-144735900"	NA	inter
CUST_26680_PI429285431	0.9218585	A	0.92098427	A	1.00060615369661	0	lncRNA	28177-2_{3001..4045}	"lncrnadb|Beta-MHC_antisense_transcripts_gi|26092665|dbj|AK048126.1|_Mus_musculus_16_days_embryo_head_cDNA,_RIKEN_full-length_enriched_library,_clone:C130036G20_product:similar_to_BETA-MYOSIN_HEAVY_CHAIN,_BETA-MHC_[Homo_sapiens],_full_insert_sequence"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncrnadb20130808	"lncrnadb20130808,NONCODERv3,"	">lncrnadb|Beta-MHC_antisense_transcripts_gi|26092665|dbj|AK048126.1|_Mus_musculus_16_days_embryo_head_cDNA,_RIKEN_full-length_enriched_library,_clone:C130036G20_product:similar_to_BETA-MYOSIN_HEAVY_CHAIN,_BETA-MHC_[Homo_sapiens],_full_insert_sequence"	NA	     3000	     4044	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40085_PI429285431	0.8992545	A	0.8966086	A	1.0018356809282	0	lncRNA	40932-1_{1..2307}	n407413|NR_026868|lncRNA|Homosapiens||RefGeneNoncode|NR_026868||1.8941500|-0.1567279	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407413|NR_026868|lncRNA|Homosapiens||RefGeneNoncode|NR_026868||1.8941500|-0.1567279	chr9	 95571892	 95574198	+	NA	NA	NA	NA	ZNF484	"hg19_refFlat_EEF1D:range=chr8:144661962-1446690155'pad=0,hg19_refFlat_EEF1D:range=chr8:144661962-1446690155'pad=0 3'pad=0 strand=- repeatMasking=none,-101.90;hg19_refFlat_EEF1D:range=chr8:144661962-1446722515'pad=0,hg19_refFlat_EEF1D:range=chr8:144661962-1446722515'pad=0 3'pad=0 strand=- repeatMasking=none,-101.90chr9:95603237-95610739"	NA	inter
CUST_2094_PI429285431	1.3516781	A	1.9012836	A	0.683206923421646	0	lncRNA	2085-1_{1..296}	"transcript_id ""ENST00000508677.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508677.1"" | genecode_v17"	chr5	 17404128	 17404423	+	ENSG00000248455.1	ENST00000508677.1	RP11-321E2.3	RP11-321E2.3-001	NA	NA	NA	inter
CUST_8519_PI429285431	0.90527153	A	0.9037327	A	1.001067204734	0	lncRNA	10080-2_{3001..4429}	lnc-C17orf58-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C17orf58-4:1	chr17	 65883525	 65884953	-	lnc-C17orf58-4	lnc-C17orf58-4:1	ENSG00000247912	AC107377.1	BPTF	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr17:65870525-65891544"	NA	inner
CUST_26015_PI429285431	9.207264	P	9.36085	P	0.899013073026748	0	lncRNA	27534-1_{1..298}	lnc-POLR2C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POLR2C-1:1	chr16	 57496469	 57496766	+	lnc-POLR2C-1	lnc-POLR2C-1:1	ENSG00000260345.1	AC009052.12	DOK4	NA	chr16:57505870-57506649	inner
CUST_16102_PI429285431	0.91843027	A	0.89834243	A	1.0140212176554	0	lncRNA	17808-1_{1..1092}	lnc-IL6-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL6-4:1	chr7	 22451950	 22453041	+	lnc-IL6-4	lnc-IL6-4:1	XLOC_006008	linc-IL6-2	STEAP1B	NA	chr7:22459063-22462159	inter
CUST_34827_PI429285431	2.72479	A	2.4428113	A	1.21586133203139	0	lncRNA	36258-1_{1..1773}	n341733|BC035211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4206|NULL|-0.9600210|-0.3029882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341733|BC035211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4206|NULL|-0.9600210|-0.3029882	chr9	100505489	100507261	+	NA	NA	NA	NA	FOXE1	NA	chr9:100495489-100517217	inter
CUST_19767_PI429285431	16.628971	P	16.699186	P	0.952496040178327	0	lncRNA	21425-1_{1..472}	lnc-DTYMK-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DTYMK-3:1	chr2	242674532	242675003	-	lnc-DTYMK-3	lnc-DTYMK-3:1	ENSG00000215692.2	AC114730.8	ING5	"hg19_refFlat_D2HGDH:range=chr2:242674640-2427073845'pad=0,hg19_refFlat_D2HGDH:range=chr2:242674640-2427073845'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.60chr2:242664532-242668896"	NA	inner
CUST_45527_PI429285431	2.3229887	A	2.2448337	A	1.05566713011316	0	lncRNA	49935-1_{1..1374}	"gi|310120456|ref|XR_109018.1| PREDICTED: Homo sapiens uncharacterized LOC100289455 (LOC100289455), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120456|ref|XR_109018.1| PREDICTED: Homo sapiens uncharacterized LOC100289455 (LOC100289455), misc_RNA"	Chr10	 22725316	 22726689	+	100289455	XR_109018.2	NA	NA	NA	NA	NA	inter
CUST_1993_PI429285431	0.90307695	A	0.90655625	A	0.997591238747146	0	lncRNA	1984-1_{1..578}	"transcript_id ""ENST00000512527.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512527.1"" | genecode_v17"	chr4	178733770	178734347	-	ENSG00000251504.1	ENST00000512527.1	RP11-162G9.1	RP11-162G9.1-003	NA	NA	NA	inter
CUST_41069_PI429285431	7.9769897	P	8.221589	P	0.844050193517732	0	lncRNA	41742-1_{1..77}	ENST00000362251 ncrna:miRNA chromosome:GRCh37:2:219267369:219267445:1 gene:ENSG00000199121 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362251 ncrna:miRNA chromosome:GRCh37:2:219267369:219267445:1 gene:ENSG00000199121 gene_biotype:miRNA transcript_biotype:miRNA	chr2	219267369	219267445	+	ENSG00000199121	ENST00000362251	NA	NA	SLC11A1	NA	chr2:219257369-219261617	inner
CUST_24806_PI429285431	1.8655611	A	1.2512063	A	1.53087320906736	0	lncRNA	26349-1_{1..3000}	lnc-ZNF862-1:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:17	chr7	149530896	149533895	+	lnc-ZNF862-1	lnc-ZNF862-1:17	ENSG00000197558.7	SSPO	ZNF862	NA	chr7:149535509-149541068	inner
CUST_29546_PI429285431	0.9118968	A	0.9073006	A	1.00319092326279	0	lncRNA	31306-1_{1..344}	n333025|AF161361|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072091|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072091|2.5771700|-0.3021520	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333025|AF161361|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072091|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072091|2.5771700|-0.3021520	chr4	  1961769	  1962112	-	NA	NA	NA	NA	WHSC1	NA	chr4:1951769-1972113	inner
CUST_22992_PI429285431	0.9081645	A	0.90273905	A	1.00376771543236	0	lncRNA	24566-1_{1..909}	lnc-BAG2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BAG2-2:1	chr6	 57190723	 57191631	+	lnc-BAG2-2	lnc-BAG2-2:1	ENSG00000146143.12	PRIM2	PRIM2	NA	chr6:57182415-57201168	inner
CUST_39690_PI429285431	7.478811	P	6.6914225	P	1.72594740288297	0	lncRNA	40630-1_{1..1584}	n405455|NR_002207|lncRNA|Homosapiens||RefGeneNoncode|NR_002207||4.9501300|-0.2858646	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405455|NR_002207|lncRNA|Homosapiens||RefGeneNoncode|NR_002207||4.9501300|-0.2858646	chr11	 11373320	 11374903	-	NA	NA	NA	NA	GALNTL4	NA	chr11:11363320-11384904	inner
CUST_43222_PI429285431	1.0470006	A	0.8897788	A	1.11513764686129	0	lncRNA	48036-1_{1..574}	ENST00000524412 havana:sense_intronic chromosome:GRCh37:11:47189832:47191114:-1 gene:ENSG00000270060 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000524412 havana:sense_intronic chromosome:GRCh37:11:47189832:47191114:-1 gene:ENSG00000270060 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr11	 47189832	 47190405	-	ENSG00000270060	ENST00000524412	NA	NA	ARFGAP2	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30chr11:47185849-47198676"	NA	inner
CUST_49310_PI429285431	1.2745402	A	0.9076097	A	1.28960612402346	0	lncRNA	53126-2_{3001..5001}	hg19_lincRNAsTranscripts_TCONS_l2_00023709 range=chr5:34164803-34189619 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023709 range=chr5:34164803-34189619 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 34167803	 34169803	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51391_PI429285431	1.0079849	A	1.5800123	A	0.672670828618655	0	lncRNA	54978-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00009670 range=chr16:31711913-31724332 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009670 range=chr16:31711913-31724332 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 31711913	 31714912	+	NA	NA	NA	NA	ZNF720	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40chr16:31724550-31734332"	NA	inter
CUST_5684_PI429285431	0.8987917	A	0.89854413	A	1.00017161717203	0	lncRNA	5608-1_{1..447}	"transcript_id ""ENST00000562466.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562466.1"" | genecode_v17"	chr16	 87526161	 87526607	+	ENSG00000260750.1	ENST00000562466.1	RP11-482M8.1	RP11-482M8.1-002	ZCCHC14	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80chr16:87516161-87525460"	NA	inter
CUST_18458_PI429285431	0.92417145	A	0.92463875	A	0.999676144774953	0	lncRNA	20181-2_{3001..3828}	lnc-EIF3M-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-EIF3M-2:2	chr11	 32462391	 32463218	+	lnc-EIF3M-2	lnc-EIF3M-2:2	ENSG00000183242	WT1-AS	WT1	NA	chr11:32449391-32457081	inter
CUST_26635_PI429285431	7.893323	P	7.94603	P	0.964125594173259	0	lncRNA	28138-1_{1..510}	lnc-PCM1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PCM1-4:1	chr8	 17718467	 17718976	+	lnc-PCM1-4	lnc-PCM1-4:1	ENSG00000253944.1	RP11-156K13.1	FGL1	NA	chr8:17721900-17728578	inter
CUST_3449_PI429285431	4.943312	P	5.732009	P	0.578866671388838	0	lncRNA	3420-1_{1..666}	"transcript_id ""ENST00000590903.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590903.1"" | genecode_v17"	chr9	 84888374	 84889039	+	ENSG00000228430.4	ENST00000590903.1	RP11-15B24.5	RP11-15B24.5-008	NA	NA	NA	inter
CUST_27783_PI429285431	0.9183106	A	0.93189615	A	0.990627413400847	0	lncRNA	29368-1_{1..499}	n325004|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078509|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078509|-1.2381900|-0.4604197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325004|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078509|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078509|-1.2381900|-0.4604197	chr20	 29472899	 29473397	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30181_PI429285431	3.3510065	P	3.2374268	A	1.08190940620115	0	lncRNA	31955-1_{1..380}	n334879|AJ421674|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247906|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247906|-1.2074500|-0.2345812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334879|AJ421674|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247906|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247906|-1.2074500|-0.2345812	chrX	 49969415	 49969794	+	NA	NA	NA	NA	CCNB3	NA	chrX:50027540-50038245	inner
CUST_45246_PI429285431	7.148731	P	7.5088296	P	0.779111330013041	0	lncRNA	49699-1_{1..432}	"gi|310120245|ref|XR_108869.1| PREDICTED: Homo sapiens uncharacterized LOC100506558 (LOC100506558), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120245|ref|XR_108869.1| PREDICTED: Homo sapiens uncharacterized LOC100506558 (LOC100506558), misc_RNA"	Chr8	 98962943	 98963374	+	100506558	XR_108869.2	NA	NA	NA	NA	NA	inter
CUST_46674_PI429285431	1.6838809	A	1.3797226	A	1.23469807695297	0	lncRNA	50842-1_{1..262}	"gi|310124388|ref|XR_109318.1| PREDICTED: Homo sapiens uncharacterized LOC100506105 (LOC100506105), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310124388|ref|XR_109318.1| PREDICTED: Homo sapiens uncharacterized LOC100506105 (LOC100506105), misc_RNA"	NA	NA	NA	NA	NA	XR_109318.1	NA	NA	NA	NA	NA	Unknown
CUST_41791_PI429285431	5.170443	P	5.2998285	P	0.914220769538133	0	lncRNA	43370-1_{1..91}	ENST00000583731 ncrna:miRNA chromosome:GRCh37:9:20411146:20411236:-1 gene:ENSG00000263790 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583731 ncrna:miRNA chromosome:GRCh37:9:20411146:20411236:-1 gene:ENSG00000263790 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 20411146	 20411236	-	ENSG00000263790	ENST00000583731	NA	NA	MLLT3	NA	chr9:20401146-20421236	inner
CUST_19860_PI429285431	3.359268	P	3.228721	P	1.09470868303302	0	lncRNA	21517-1_{1..1911}	lnc-MYO1G-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-MYO1G-1:1	chr7	 44998598	 45000508	-	lnc-MYO1G-1	lnc-MYO1G-1:1	ENSG00000260997.1	RP4-647J21.1	MYO1G	NA	chr7:45002260-45010508	inter
LNCA_21_P0004434	0.91904724	A	1.0828714	A	0.892655764405576	0	lncRNA	TCONS_00010447	NA	NA	NA	NA	XLOC_004965	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004965), lincRNA [TCONS_00010447]"	chr5:117897665-117881835	hs|5q23.1	Agilent_HUMAN_G3V2	TCONS_00010447	TCONS_00010447	chr5	117881835	117897665	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20867_PI429285431	3.064572	A	3.398753	P	0.793234318056353	0	lncRNA	22498-1_{1..772}	lnc-UBXN4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBXN4-2:1	chr2	136774028	136774799	+	lnc-UBXN4-2	lnc-UBXN4-2:1	ENSG00000231890.1	AC093391.2	NA	"hg19_refFlat_DARS:range=chr2:136664886-1367430385'pad=0,hg19_refFlat_DARS:range=chr2:136664886-1367430385'pad=0 3'pad=0 strand=- repeatMasking=none,-97.00"	NA	inter
CUST_23445_PI429285431	4.8086596	P	4.960303	P	0.900224416422217	0	lncRNA	25012-1_{1..809}	lnc-MTERFD3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTERFD3-2:1	chr12	107126685	107127493	-	lnc-MTERFD3-2	lnc-MTERFD3-2:1	ENSG00000257918.1	RP11-482D24.3	RFX4	"hg19_refFlat_RFX4:range=chr12:106977099-1071552475'pad=0,hg19_refFlat_RFX4:range=chr12:106977099-1071552475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_RFX4:range=chr12:106995055-1071552475'pad=0,hg19_refFlat_RFX4:range=chr12:106995055-1071552475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_RFX4:range=chr12:107078592-1071552475'pad=0,hg19_refFlat_RFX4:range=chr12:107078592-1071552475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00chr12:107116685-107136844"	NA	inter
CUST_27989_PI429285431	0.90522844	A	0.9066192	A	0.999036463127216	0	lncRNA	29597-1_{1..635}	n325242|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328254|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328254|-1.0701200|-0.3227532	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325242|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328254|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328254|-1.0701200|-0.3227532	chr2	 77996567	 77997201	+	NA	NA	NA	NA	NA	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.91;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10"	NA	inter
CUST_33236_PI429285431	1.9081907	A	0.91758686	A	1.9870164825874	0	lncRNA	34823-1_{1..1734}	n339936|BC046195|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2385|NULL|-1.2068000|-0.2269571	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339936|BC046195|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2385|NULL|-1.2068000|-0.2269571	chr10	  1147571	  1149304	+	NA	NA	NA	NA	WDR37	NA	chr10:1137571-1159291	inner
CUST_32312_PI429285431	5.582574	P	5.593593	P	0.99239130500829	0	lncRNA	33995-1_{1..626}	n338889|AF086198|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1315|NULL|-1.0340300|-0.2762456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338889|AF086198|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1315|NULL|-1.0340300|-0.2762456	chr2	 75059781	 75060406	+	NA	NA	NA	NA	HK2	NA	chr2:75049781-75070397	inner
CUST_233_PI429201921	1.1731482	A	0.9071131	A	1.20249850468882	0	lncRNA	180-2_{3001..6000}	TC0X001725.hg.1	TCONS_l2_00030697-XLOC_l2_015535 // Broad TUCP // linc-FAAH2-5 chrX:+:56644823-56650891 // chrX // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrX:+:56644823-56650891	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00030697-XLOC_l2_015535	linc-FAAH2-5	chrX	 56644823	 56650891	+	NA	NA	NA	NA	WASF2	NA	chr1:27773709-27796093	Unknown
CUST_16512_PI429285431	0.9132525	A	0.89972836	A	1.00941829512338	0	lncRNA	18212-1_{1..799}	lnc-BANP-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BANP-4:1	chr16	 88278485	 88279283	+	lnc-BANP-4	lnc-BANP-4:1	XLOC_011828	linc-ZNF469-1	NA	NA	NA	inter
LNCA_21_P0004507	0.9232125	A	2.475319	A	0.34101178424116	0	lncRNA	TCONS_00010707	NA	NA	NA	NA	XLOC_004412	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004412), lincRNA [TCONS_00010707]"	chr5:67483890-67501535	hs|5q13.1	Agilent_HUMAN_G3V2	TCONS_00010707	TCONS_00010707	chr5	 67483890	 67501535	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8856_PI429285431	7.6212587	P	7.5228558	P	1.07058763862055	0	lncRNA	10395-1_{1..968}	lnc-FBN2-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FBN2-2:7	chr5	127418427	127419394	-	lnc-FBN2-2	lnc-FBN2-2:7	ENSG00000245937	CTC-228N24.3	SLC12A2	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70chr5:127419483-127428652"	NA	inter
CUST_34937_PI429285431	5.4092145	P	5.243188	P	1.1219640890267	0	lncRNA	36355-1_{1..1628}	n341854|AL157439|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4334|NULL|-0.7643210|-0.1707623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341854|AL157439|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4334|NULL|-0.7643210|-0.1707623	chr6	 44041649	 44043276	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6499_PI429285431	6.841654	P	7.6354322	P	0.576831477810519	0	lncRNA	6441-1_{1..547}	"transcript_id ""ENST00000590889.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590889.1"" | genecode_v17"	chr19	 37756849	 37757395	-	ENSG00000267605.1	ENST00000590889.1	CTD-3220F14.1	CTD-3220F14.1-002	NA	NA	NA	inter
CUST_50077_PI429285431	2.872865	A	2.3538864	A	1.43294039490953	0	lncRNA	53810-1_{1..2944}	hg19_lincRNAsTranscripts_TCONS_l2_00028288 range=chr8:90597666-90608977 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028288 range=chr8:90597666-90608977 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 90597666	 90600609	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12758_PI429285431	3.9807203	P	3.1309476	A	1.80221695932789	0	lncRNA	14381-2_{3001..3199}	lnc-SYNM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYNM-1:1	chr15	 99641610	 99641808	+	lnc-SYNM-1	lnc-SYNM-1:1	XLOC_011380	linc-SYNM-1	SYNM	NA	chr15:99645286-99651439	inter
CUST_5933_PI429285431	7.2908864	P	6.193658	P	2.13943285287951	0	lncRNA	5862-1_{1..2694}	"transcript_id ""ENST00000583175.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583175.1"" | genecode_v17"	chr17	 62116510	 62119203	-	ENSG00000263899.1	ENST00000583175.1	RP11-214C8.5	RP11-214C8.5-001	ERN1	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90chr17:62120390-62129203"	NA	inter
CUST_5122_PI429285431	0.9104482	A	1.5942394	A	0.622527208993679	0	lncRNA	5062-1_{1..336}	"transcript_id ""ENST00000553822.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553822.1"" | genecode_v17"	chr15	 27866680	 27867015	+	ENSG00000258594.1	ENST00000553822.1	RP11-30G8.2	RP11-30G8.2-001	NA	NA	NA	inter
CUST_27689_PI429285431	1.0563258	A	0.99730617	A	1.0417576035649	0	lncRNA	29267-1_{1..1117}	n324896|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158194|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158194|-0.8497060|-0.3249519	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324896|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158194|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158194|-0.8497060|-0.3249519	chr21	 18129203	 18130319	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1990_PI429285431	0.9283575	A	1.0576537	A	0.914277359766237	0	lncRNA	1981-1_{1..691}	"transcript_id ""ENST00000508790.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508790.1"" | genecode_v17"	chr4	177796856	177797546	+	ENSG00000250263.1	ENST00000508790.1	RP11-765K14.1	RP11-765K14.1-001	NA	NA	NA	inter
CUST_26338_PI429285431	1.5560564	A	1.7537739	A	0.87192895878749	0	lncRNA	27845-1_{1..494}	lnc-NAV3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NAV3-2:1	chr12	 78876565	 78877058	+	lnc-NAV3-2	lnc-NAV3-2:1	ENSG00000258084.1	RP11-754N21.1	NA	NA	NA	inter
CUST_34367_PI429285431	0.91725004	A	0.91486895	A	1.00165180855547	0	lncRNA	35854-1_{1..1186}	n341235|BC040864|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3703|NULL|-1.2682400|-0.3364773	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341235|BC040864|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3703|NULL|-1.2682400|-0.3364773	chr7	 42701324	 42702509	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60"	NA	inter
CUST_28460_PI429285431	3.0703602	P	3.1215565	P	0.965135694950125	0	lncRNA	30125-1_{1..435}	n325792|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044235|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044235|-0.8638890|-0.3406399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325792|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044235|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044235|-0.8638890|-0.3406399	chr13	 25524413	 25524847	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7712_PI429285431	2.6523929	A	2.943457	A	0.817299014486225	0	lncRNA	9344-2_{3001..3064}	lnc-PPM1H-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPM1H-1:1	chr12	 63401590	 63401653	-	lnc-PPM1H-1	lnc-PPM1H-1:1	ENSG00000250314	ENST00000514535	NA	"hg19_refFlat_LDHAL6B:range=chr15:59499140-595002855'pad=0,hg19_refFlat_LDHAL6B:range=chr15:59499140-595002855'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00"	NA	inter
CUST_25259_PI429285431	0.90860814	A	0.9025167	A	1.00423119077881	0	lncRNA	26789-1_{1..579}	lnc-SPACA3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPACA3-3:1	chr17	 31908175	 31908753	+	lnc-SPACA3-3	lnc-SPACA3-3:1	ENSG00000265125.1	RP11-31I22.3	ACCN1	NA	chr17:31898175-31918472	inner
CUST_4291_PI429285431	0.92927235	A	1.595793	A	0.630024287134503	0	lncRNA	4246-1_{1..745}	"transcript_id ""ENST00000539653.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539653.1"" | genecode_v17"	chr12	 65893679	 65894423	-	ENSG00000250748.2	ENST00000539653.1	RP11-230G5.2	RP11-230G5.2-008	NA	NA	NA	inter
CUST_51888_PI429285431	10.173218	P	9.733964	P	1.35590302523803	0	lncRNA	55437-1_{1..474}	hg19_lincRNAsTranscripts_TCONS_l2_00012703 range=chr19:55182825-55184116 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012703 range=chr19:55182825-55184116 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 55182825	 55183298	+	NA	NA	NA	NA	LILRB4	NA	chr19:55174124-55179848	inter
CUST_5320_PI429285431	8.9305935	P	10.226634	P	0.407242349079754	0	lncRNA	5259-1_{1..400}	"transcript_id ""ENST00000555023.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555023.1"" | genecode_v17"	chr15	 94439288	 94439687	-	ENSG00000258754.3	ENST00000555023.1	CTD-3049M7.1	CTD-3049M7.1-008	NA	NA	NA	inter
CUST_45600_PI429285431	5.115675	P	5.099831	P	1.01104274991706	0	lncRNA	49988-1_{1..2520}	"gi|228008386|ref|NR_027508.1| Homo sapiens family with sequence similarity 133, member C, pseudogene (FAM133CP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|228008386|ref|NR_027508.1| Homo sapiens family with sequence similarity 133, member C, pseudogene (FAM133CP), non-coding RNA"	Chr10	 60474775	 60477294	+	728640	NR_027508.1	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-60.50"	NA	inter
CUST_31734_PI429285431	4.1546955	P	3.38834	P	1.70096741037332	0	lncRNA	33475-1_{1..1377}	n338269|BC015671|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|662|NULL|-1.1103400|-0.2232607	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n338269|BC015671|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|662|NULL|-1.1103400|-0.2232607	chr14	 39734906	 39736282	-	NA	NA	NA	NA	CTAGE5	NA	chr14:39734476-39746265	inner
CUST_38672_PI429285431	0.907357	A	0.90042627	A	1.0048155737439	0	lncRNA	39672-1_{1..3000}	n383972|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ykc.2||1.6080700|-0.4122339	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n383972|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ykc.2||1.6080700|-0.4122339	chr21	 17566698	 17569697	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51565_PI429285431	17.509428	P	17.509428	P	1	0	lncRNA	55130-1_{1..858}	hg19_lincRNAsTranscripts_TCONS_l2_00011130 range=chr17:19349244-19350176 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011130 range=chr17:19349244-19350176 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 19349244	 19350101	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43387_PI429285431	2.37533	A	1.8761133	A	1.41344593457693	0	lncRNA	48201-1_{1..3000}	"gi|379698827|ref|NR_046428.1| Homo sapiens chloride channel, voltage-sensitive 6 (CLCN6), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379698827|ref|NR_046428.1| Homo sapiens chloride channel, voltage-sensitive 6 (CLCN6), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_046428.1	NA	NA	NA	NA	NA	Unknown
CUST_42416_PI429285431	9.269873	P	9.738546	P	0.722628970853297	0	lncRNA	45127-1_{1..86}	ENST00000384134 ncrna:snoRNA chromosome:GRCh37:9:134365873:134365958:1 gene:ENSG00000206861 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384134 ncrna:snoRNA chromosome:GRCh37:9:134365873:134365958:1 gene:ENSG00000206861 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	134365873	134365958	+	ENSG00000206861	ENST00000384134	NA	NA	PRRC2B	NA	chr9:134355873-134375578	inner
CUST_32178_PI429285431	1.938066	A	2.5656946	A	0.647239427789443	0	lncRNA	33877-1_{1..1583}	n338750|AK054589|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1171|NULL|0.2007870|-0.4325989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338750|AK054589|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1171|NULL|0.2007870|-0.4325989	chr13	 60411808	 60413390	-	NA	NA	NA	NA	DIAPH3	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80chr13:60401808-60423392"	NA	inner
CUST_9961_PI429285431	0.90739363	A	0.90311855	A	1.00296765444244	0	lncRNA	11485-1_{1..329}	lnc-MBL2-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBL2-2:5	chr10	 54782584	 54782912	-	lnc-MBL2-2	lnc-MBL2-2:5	XLOC_008826	linc-MBL2-1	NA	NA	NA	inter
CUST_8903_PI429285431	0.9081725	A	0.9377625	A	0.979698678933019	0	lncRNA	10438-1_{1..488}	lnc-SWAP70-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SWAP70-1:6	chr11	  9812416	  9812903	+	lnc-SWAP70-1	lnc-SWAP70-1:6	ENSG00000246273	RP11-540A21.3	SBF2	"hg19_refFlat_SBF2:range=chr11:9801965-103156165'pad=0,hg19_refFlat_SBF2:range=chr11:9801965-103156165'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60chr11:9802416-9822784"	NA	inner
CUST_48477_PI429285431	3.8379312	P	2.9564939	A	1.84220970798366	0	lncRNA	52329-1_{1..490}	hg19_lincRNAsTranscripts_TCONS_l2_00000850 range=chr1:224180490-224192503 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000850 range=chr1:224180490-224192503 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	224180490	224180979	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38732_PI429285431	9.051982	P	8.776957	P	1.21001505700075	0	lncRNA	39726-1_{1..2968}	n384235|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ccu.3||2.4046600|-0.3361145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n384235|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ccu.3||2.4046600|-0.3361145	chr3	 24137779	 24140746	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006393	0.9123507	A	1.4134775	A	0.706554719367278	0	lncRNA	TCONS_00016868	NA	NA	NA	NA	XLOC_007850	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007850), lincRNA [TCONS_00016868]"	chr9:127961872-127961813	hs|9q33.3	Agilent_HUMAN_G3V2	TCONS_00016868	TCONS_00016868	chr9	127961813	127961872	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003317	0.91385764	A	0.918164	A	0.997019509215514	0	lncRNA	ENST00000510956	NA	BC034799	NA	Hs.555072	XLOC_003548	NA	ENST00000510956	THC2607947	NA	"BROAD Institute lincRNA (XLOC_003548), lincRNA [TCONS_00007386]"	chr4:58332079-58332138	hs|4q12	Agilent_HUMAN_G3V2	ENST00000510956	ENST00000510956	chr4	 58332079	 58332138	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_121_PI429201921	0.8966161	A	1.0163978	A	0.920326898461012	0	lncRNA	116-1_{1..3000}	TC09002548.hg.1	TCONS_l2_00029317-XLOC_l2_015203 // Broad TUCP // linc-FAM75A7-19 chr9:-:66707911-66711336 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:-:66707911-66711336	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00029317-XLOC_l2_015203	linc-FAM75A7-19	chr9	 66707911	 66711336	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004990	1.5765013	A	0.9212921	A	1.57484429906909	0	lncRNA	TCONS_00012047	NA	NA	NA	NA	XLOC_005579	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005579), lincRNA [TCONS_00012047]"	chr6:2791204-2791145	hs|6p25.2	Agilent_HUMAN_G3V2	TCONS_00012047	TCONS_00012047	chr6	  2791145	  2791204	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51526_PI429285431	4.261122	P	4.2802715	P	0.986814281460561	0	lncRNA	55098-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00011139 range=chr17:20432533-20460098 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011139 range=chr17:20432533-20460098 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 20435533	 20438532	-	NA	NA	NA	NA	CDRT15L2	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70chr17:20422533-20470098"	NA	inter
CUST_22923_PI429285431	1.2348847	A	0.9275336	A	1.2374335888031	0	lncRNA	24499-1_{1..575}	lnc-RSPH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RSPH1-1:1	chr21	 43981546	 43982120	-	lnc-RSPH1-1	lnc-RSPH1-1:1	ENSG00000235772.1	AP001625.6	SLC37A1	NA	chr21:43971546-43992044	inner
CUST_18563_PI429285431	1.5793841	A	0.91120726	A	1.58906356954527	0	lncRNA	20273-1_{1..564}	lnc-NCKAP1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NCKAP1L-1:1	chr12	 54891107	 54891670	+	lnc-NCKAP1L-1	lnc-NCKAP1L-1:1	ENSG00000258137	RP11-753H16.3	NCKAP1L	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70chr12:54891495-54901472"	NA	inter
LNCA_21_P0006017	0.9244735	A	0.92408895	A	1.00026658527583	0	lncRNA	ENST00000427901	NA	NA	NA	NA	XLOC_007398	NA	ENST00000427901	NA	NA	"BROAD Institute lincRNA (XLOC_007398), lincRNA [TCONS_00015691]"	chr9:74872507-74872566	hs|9q21.13	Agilent_HUMAN_G3V2	ENST00000427901	ENST00000427901	chr9	 74872507	 74872566	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7202_PI429285431	1.4550676	A	1.8813375	A	0.744183392414977	0	lncRNA	7577-1_{1..334}	"transcript_id ""ENST00000411373.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411373.1"" | genecode_v17"	chr4	 56406669	 56407002	-	ENSG00000223305.1	ENST00000411373.1	RN7SKP30	RN7SKP30-201	CLOCK	NA	chr4:56396669-56412997	inner
CUST_6000_PI429285431	1.0870388	A	1.0647563	A	1.01556494331426	0	lncRNA	5926-1_{1..3000}	"transcript_id ""ENST00000397549.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000397549.2"" | genecode_v17"	chr17	 77681075	 77684074	+	ENSG00000214105.2	ENST00000397549.2	CTD-2116F7.1	CTD-2116F7.1-001	LOC100652929	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.86;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40chr17:77681138-77686082"	NA	inter
CUST_20724_PI429285431	0.9245194	A	0.9106123	A	1.00968627839809	0	lncRNA	22359-1_{1..665}	lnc-C5orf27-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C5orf27-2:1	chr5	 95210127	 95210791	+	lnc-C5orf27-2	lnc-C5orf27-2:1	ENSG00000250362.1	AC008592.5	NA	NA	NA	inter
CUST_37152_PI429285431	0.91724306	A	0.91203636	A	1.00361552974114	0	lncRNA	38270-1_{1..691}	n345589|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1138|NULL|-1.3557400|-0.2409067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345589|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1138|NULL|-1.3557400|-0.2409067	chr3	 52341570	 52342260	+	NA	NA	NA	NA	DNAH1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70chr3:52350335-52354151"	NA	inter
CUST_2181_PI429285431	4.8077545	P	4.72032	P	1.06247912775614	0	lncRNA	2173-1_{1..410}	"transcript_id ""ENST00000507733.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507733.1"" | genecode_v17"	chr5	 67726254	 67726663	-	ENSG00000248884.1	ENST00000507733.1	CTC-537E7.3	CTC-537E7.3-001	NA	NA	NA	inter
CUST_47041_PI429285431	10.921385	P	11.040113	P	0.920999322395967	0	lncRNA	51130-1_{1..1458}	"gi|262331520|ref|NR_030717.1| Homo sapiens small nuclear RNA activating complex, polypeptide 2, 45kDa (SNAPC2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|262331520|ref|NR_030717.1| Homo sapiens small nuclear RNA activating complex, polypeptide 2, 45kDa (SNAPC2), transcript variant 2, non-coding RNA"	Chr19	  7985867	  7987324	+	6618	NR_030717.1	NA	NA	NA	NA	NA	inter
CUST_39320_PI429285431	7.887614	P	7.8114104	P	1.05424019219339	0	lncRNA	40287-1_{1..3000}	n386362|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ijm.1||-1.2965300|-0.4023579	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386362|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ijm.1||-1.2965300|-0.4023579	chr4	 79834383	 79837382	+	NA	NA	NA	NA	BMP2K	NA	chr4:79824383-79833341	inter
CUST_43756_PI429285431	2.44256	A	0.8986657	A	2.91580512142929	0	lncRNA	48494-1_{1..2828}	"gi|305855106|ref|NR_036605.1| Homo sapiens geranylgeranyl diphosphate synthase 1 (GGPS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|305855106|ref|NR_036605.1| Homo sapiens geranylgeranyl diphosphate synthase 1 (GGPS1), transcript variant 3, non-coding RNA"	Chr1	235491869	235494696	+	9453	NR_036605.1	NA	NA	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90"	NA	inter
LNCA_21_P0014347	2.316838	A	2.238557	A	1.05575933245897	0	lncRNA	XR_109388	XR_109388	XR_109388	NA	Hs.665543	LOC100505988	uncharacterized LOC100505988	NA	THC2621656	NA	"PREDICTED: Homo sapiens hypothetical LOC100505988 (LOC100505988), miscRNA [XR_109388]"	chr17:43316003-43315944	hs|17q21.31	Agilent_HUMAN_G3V2	XR_109388	XR_109388	chr17	 43315944	 43316003	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014360	0.9294395	A	0.92161477	A	1.00543842436925	0	lncRNA	XR_109454	XR_109454	XR_109454	NA	Hs.729594	LOC100506582	uncharacterized LOC100506582	NA	THC2699719	NA	"PREDICTED: Homo sapiens hypothetical LOC100506582 (LOC100506582), miscRNA [XR_109454]"	chr17:29599243-29599184	hs|17q11.2	Agilent_HUMAN_G3V2	XR_109454	XR_109454	chr17	 29599184	 29599243	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49368_PI429285431	4.3544903	P	4.639498	P	0.820737228332751	0	lncRNA	53181-1_{1..725}	hg19_lincRNAsTranscripts_TCONS_l2_00023847 range=chr5:102779412-102834870 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023847 range=chr5:102779412-102834870 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	102779412	102780136	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007975	0.9292025	A	0.9207278	A	1.00589150144123	0	lncRNA	ENST00000413124	NA	AK057351	NA	Hs.148951	XLOC_010530	NA	ENST00000413124	THC2525382	NA	"BROAD Institute lincRNA (XLOC_010530), lincRNA [TCONS_00021612]"	chr13:22446982-22446923	hs|13q12.11	Agilent_HUMAN_G3V2	ENST00000413124	ENST00000413124	chr13	 22446923	 22446982	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24627_PI429285431	1.3243493	A	1.570061	A	0.843399633613698	0	lncRNA	26176-1_{1..1282}	lnc-PCP4-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-PCP4-1:4	chr21	 41756506	 41757787	+	lnc-PCP4-1	lnc-PCP4-1:4	ENSG00000235123.1	DSCAM-AS1	DSCAM	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70chr21:41746506-41767285"	NA	inter
CUST_38178_PI429285431	0.9099033	A	1.0994682	A	0.876870135248913	0	lncRNA	39246-1_{1..1799}	n381438|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jbl.2||-0.8362110|-0.1635249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381438|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jbl.2||-0.8362110|-0.1635249	chr10	 45322732	 45324530	-	NA	NA	NA	NA	RASSF4	NA	chr10:45455219-45465137	inter
CUST_18958_PI429285431	0.9177476	A	0.92103595	A	0.997723285124578	0	lncRNA	20650-1_{1..1869}	lnc-TOP3B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TOP3B-1:3	chr22	 22398080	 22399948	-	lnc-TOP3B-1	lnc-TOP3B-1:3	ENSG00000197549	PRAMEL	NA	NA	NA	inter
CUST_2713_PI429285431	2.2139468	A	3.0369678	P	0.565257055569391	0	lncRNA	2698-1_{1..449}	"transcript_id ""ENST00000457340.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457340.1"" | genecode_v17"	chr6	168595038	168595486	+	ENSG00000234768.1	ENST00000457340.1	RP11-503C24.1	RP11-503C24.1-001	NA	NA	NA	inter
CUST_3017_PI429285431	0.91215736	A	1.0565455	A	0.904763014371351	0	lncRNA	2996-1_{1..589}	"transcript_id ""ENST00000525673.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525673.1"" | genecode_v17"	chr8	 13701610	 13702198	-	ENSG00000254753.1	ENST00000525673.1	RP11-480O10.1	RP11-480O10.1-001	NA	NA	NA	inter
CUST_17426_PI429285431	1.9596621	A	2.8514862	A	0.5389322776127	0	lncRNA	19150-1_{1..300}	lnc-CTC-236F12.4.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTC-236F12.4.1-3:2	chr5	 55830957	 55831256	-	lnc-CTC-236F12.4.1-3	lnc-CTC-236F12.4.1-3:2	XLOC_004831	linc-ANKRD55-3	NA	NA	NA	inter
LNCA_21_P0009101	0.9253664	A	1.1227189	A	0.872149583606504	0	lncRNA	TCONS_00024847	NA	NA	NA	NA	XLOC_011730	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011730), lincRNA [TCONS_00024847]"	chr16:54888799-54888858	hs|16q12.2	Agilent_HUMAN_G3V2	TCONS_00024847	TCONS_00024847	chr16	 54888799	 54888858	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23564_PI429285431	4.688815	P	3.6723988	P	2.02288765605698	0	lncRNA	25131-1_{1..386}	lnc-OSBP2-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OSBP2-2:10	chr22	 31368841	 31369226	+	lnc-OSBP2-2	lnc-OSBP2-2:10	ENSG00000253352.3	TUG1	MORC2	NA	chr22:31358841-31364187	inter
CUST_20441_PI429285431	5.3735094	P	5.41427	P	0.972142291340278	0	lncRNA	22085-1_{1..712}	lnc-TRPV2-1:30	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRPV2-1:30	chr17	 16367033	 16367744	+	lnc-TRPV2-1	lnc-TRPV2-1:30	ENSG00000175061.10	C17orf76-AS1	C17orf76	NA	chr17:16357033-16377164	inner
CUST_47338_PI429285431	6.480657	P	7.020764	P	0.687719901229523	0	lncRNA	51391-1_{1..599}	"gi|310124033|ref|XR_109591.1| PREDICTED: Homo sapiens uncharacterized LOC100505771, transcript variant 1 (LOC100505771), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310124033|ref|XR_109591.1| PREDICTED: Homo sapiens uncharacterized LOC100505771, transcript variant 1 (LOC100505771), misc_RNA"	Chr20	 62258493	 62259091	+	100505771	XR_109591.2	NA	NA	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70"	NA	inter
CUST_33643_PI429285431	1.0845884	A	0.89413625	A	1.14112129466014	0	lncRNA	35208-1_{1..330}	n340405|AF056423|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2866|NULL|-1.1043600|-0.2191613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340405|AF056423|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2866|NULL|-1.1043600|-0.2191613	chr5	 11107807	 11108136	-	NA	NA	NA	NA	CTNND2	NA	chr5:11097807-11118137	inner
LNCA_21_P0001592	7.863446	P	8.040308	P	0.884625049484151	0	lncRNA	TCONS_00001706	NA	NA	NA	NA	XLOC_001066	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001066), lincRNA [TCONS_00001706]"	chr1:161389405-161389346	hs|1q23.3	Agilent_HUMAN_G3V2	TCONS_00001706	TCONS_00001706	chr1	161389346	161389405	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8025_PI429285431	5.0193777	P	5.6829224	P	0.631325224491923	0	lncRNA	9634-1_{1..636}	lnc-AC009336.1-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC009336.1-2:8	chr2	177042439	177043074	-	lnc-AC009336.1-2	lnc-AC009336.1-2:8	ENSG00000224189	AC009336.23	HOXD3	NA	chr2:177032439-177037826	inter
CUST_15533_PI429285431	2.022426	A	1.4915502	A	1.44480601083839	0	lncRNA	17218-1_{1..620}	lnc-DRD5-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DRD5-8:1	chr4	 11344450	 11345069	+	lnc-DRD5-8	lnc-DRD5-8:1	XLOC_003455	linc-CPEB2-11	NA	NA	NA	inter
CUST_50452_PI429285431	7.592632	P	6.1750345	P	2.67140275350145	0	lncRNA	54158-1_{1..831}	hg19_lincRNAsTranscripts_TCONS_l2_00030520 range=chrX:70534680-70535838 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030520 range=chrX:70534680-70535838 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 70534680	 70535510	-	NA	NA	NA	NA	ITGB1BP2	NA	chrX:70524680-70525204	inter
LNCA_21_P0004133	0.92079866	A	1.0766929	A	0.897575847068815	0	lncRNA	ENST00000510261	NA	NA	NA	NA	XLOC_004847	NA	ENST00000510261	NA	NA	"BROAD Institute lincRNA (XLOC_004847), lincRNA [TCONS_00009677]"	chr5:64782445-64782386	hs|5q12.3	Agilent_HUMAN_G3V2	ENST00000510261	ENST00000510261	chr5	 64782386	 64782445	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20866_PI429285431	7.117711	P	7.4132404	P	0.81477329475403	0	lncRNA	22497-1_{1..476}	lnc-PHTF2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-PHTF2-3:1	chr7	 78641400	 78641875	+	lnc-PHTF2-3	lnc-PHTF2-3:1	ENSG00000226978.1	MAGI2-AS2	MAGI2	NA	chr7:78631400-78651593	inner
CUST_23367_PI429285431	2.3850503	A	1.4577223	A	1.90175052062129	0	lncRNA	24936-1_{1..3000}	lnc-KCTD16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-KCTD16-1:1	chr5	143861871	143864870	+	lnc-KCTD16-1	lnc-KCTD16-1:1	ENSG00000259787.1	CTB-85P21.2	KCTD16	NA	chr5:143851871-143856944	inter
CUST_37724_PI429285431	4.586109	P	4.572518	P	1.00946507650766	0	lncRNA	38821-1_{1..2081}	n346228|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1778|NULL|-1.3122300|-0.2074373	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346228|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1778|NULL|-1.3122300|-0.2074373	chr7	100918988	100921068	-	NA	NA	NA	NA	NA	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40"	NA	inter
CUST_12346_PI429285431	0.9155137	A	0.90233445	A	1.00917701290062	0	lncRNA	13958-1_{1..585}	lnc-TRAF5-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRAF5-4:1	chr1	211816165	211816749	+	lnc-TRAF5-4	lnc-TRAF5-4:1	XLOC_000549	linc-DTL-3	NA	"hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50"	NA	inter
CUST_24590_PI429285431	1.2653451	A	0.92932624	A	1.26226853333258	0	lncRNA	26139-1_{1..581}	lnc-NRP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NRP1-2:1	chr10	 33249253	 33249833	-	lnc-NRP1-2	lnc-NRP1-2:1	ENSG00000244336.2	RP11-479G22.3	ITGB1	NA	chr10:33239253-33247293	inter
CUST_47959_PI429285431	4.9237304	P	4.9539123	P	0.979296816659735	0	lncRNA	51850-1_{1..2344}	"gi|410172598|ref|XR_171877.1| PREDICTED: Homo sapiens uncharacterized LOC101060625 (LOC101060625), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172598|ref|XR_171877.1| PREDICTED: Homo sapiens uncharacterized LOC101060625 (LOC101060625), misc_RNA"	NA	NA	NA	NA	NA	XR_171877.1	NA	NA	NA	NA	NA	Unknown
CUST_21183_PI429285431	5.219637	P	5.098071	P	1.08791511942056	0	lncRNA	22808-1_{1..585}	lnc-HMBS-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMBS-1:9	chr11	118948855	118949439	+	lnc-HMBS-1	lnc-HMBS-1:9	ENSG00000160695.8	VPS11	HMBS	NA	chr11:118955587-118959039	inner
CUST_12028_PI429285431	0.89732605	A	1.2087479	A	0.805847163994127	0	lncRNA	13610-1_{1..524}	lnc-KCTD6-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCTD6-1:4	chr3	 58470299	 58470822	+	lnc-KCTD6-1	lnc-KCTD6-1:4	XLOC_002675	linc-KCTD6	KCTD6	NA	chr3:58477823-58480480	inter
CUST_6500_PI429285431	5.4083037	P	6.1841154	P	0.584059923607778	0	lncRNA	6442-1_{1..813}	"transcript_id ""ENST00000586442.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586442.1"" | genecode_v17"	chr19	 37756972	 37757784	-	ENSG00000267605.1	ENST00000586442.1	CTD-3220F14.1	CTD-3220F14.1-003	NA	NA	NA	inter
CUST_14009_PI429285431	9.429328	P	9.825315	P	0.759969276187199	0	lncRNA	15655-1_{1..568}	lnc-NOVA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOVA1-1:1	chr14	 26866359	 26866926	-	lnc-NOVA1-1	lnc-NOVA1-1:1	XLOC_010979	linc-STXBP6-2	NA	NA	NA	inter
CUST_1438_PI429285431	0.90598875	A	1.8493474	A	0.520020841446859	0	lncRNA	1427-1_{1..801}	"transcript_id ""ENST00000474711.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000474711.1"" | genecode_v17"	chr3	110246329	110247129	-	ENSG00000240895.1	ENST00000474711.1	RP11-119D18.1	RP11-119D18.1-001	NA	NA	NA	inter
LNCA_21_P0001640	0.91619503	A	1.0928531	A	0.884750103173272	0	lncRNA	TCONS_00001864	NA	NA	NA	NA	XLOC_001249	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001249), lincRNA [TCONS_00001864]"	chr1:230775952-230775893	hs|1q42.2	Agilent_HUMAN_G3V2	TCONS_00001864	TCONS_00001864	chr1	230775893	230775952	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29345_PI429285431	8.657424	P	7.6532426	P	2.00580505965447	0	lncRNA	31097-1_{1..497}	n332598|AK001156|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000003630|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000003630|1.0301900|-0.3220577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332598|AK001156|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000003630|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000003630|1.0301900|-0.3220577	chr12	 82750724	 82751220	-	NA	NA	NA	NA	C12orf26	NA	chr12:82752276-82762175	inner
CUST_12476_PI429285431	0.9038367	A	0.89202106	A	1.00822360716456	0	lncRNA	14088-1_{1..892}	lnc-MAFB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAFB-2:1	chr20	 38289105	 38289996	-	lnc-MAFB-2	lnc-MAFB-2:1	XLOC_013742	linc-KIAA1755-8	NA	NA	NA	inter
CUST_22819_PI429285431	3.9802027	P	4.6121955	P	0.645284465613031	0	lncRNA	24399-1_{1..559}	lnc-PAX8-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAX8-1:2	chr2	113932847	113933405	-	lnc-PAX8-1	lnc-PAX8-1:2	ENSG00000234174.1	AC016683.5	PSD4	NA	chr2:113931560-113942914	inner
CUST_15898_PI429285431	1.576847	A	0.9280431	A	1.56786777941697	0	lncRNA	17590-1_{1..351}	lnc-RNFT2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNFT2-3:1	chr12	117113410	117113760	+	lnc-RNFT2-3	lnc-RNFT2-3:1	XLOC_009899	linc-RNFT2-2	NA	NA	NA	inter
CUST_50003_PI429285431	0.90497494	A	0.9089703	A	0.997234458655287	0	lncRNA	53740-1_{1..1365}	hg19_lincRNAsTranscripts_TCONS_l2_00027707 range=chr8:32785485-32903006 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027707 range=chr8:32785485-32903006 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 32785485	 32786849	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5213_PI429285431	4.176265	P	4.3949866	P	0.859326565064655	0	lncRNA	5153-1_{1..333}	"transcript_id ""ENST00000560662.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560662.1"" | genecode_v17"	chr15	 67278704	 67279036	-	ENSG00000259347.1	ENST00000560662.1	RP11-798K3.2	RP11-798K3.2-002	NA	NA	NA	inter
CUST_16622_PI429285431	1.6265086	A	1.8212497	A	0.873729677711279	0	lncRNA	18322-1_{1..738}	lnc-DNAJC8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAJC8-1:1	chr1	 28573087	 28573824	-	lnc-DNAJC8-1	lnc-DNAJC8-1:1	XLOC_000757	linc-DNAJC8-2	ATPIF1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90chr1:28563087-28564616"	NA	inter
CUST_6803_PI429285431	2.271775	A	2.4579074	A	0.878958892791183	0	lncRNA	6751-1_{1..530}	"transcript_id ""ENST00000452500.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452500.1"" | genecode_v17"	chr21	 23305635	 23306164	-	ENSG00000227075.1	ENST00000452500.1	AP000472.3	AP000472.3-001	NA	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50"	NA	inter
CUST_17568_PI429285431	6.824215	P	6.753586	P	1.05017444893868	0	lncRNA	19297-1_{1..205}	lnc-RP3-377D14.1.1-7:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP3-377D14.1.1-7:7	chr1	142621001	142621205	+	lnc-RP3-377D14.1.1-7	lnc-RP3-377D14.1.1-7:7	XLOC_000377	linc-NBPF9-7	NA	NA	NA	inter
CUST_26781_PI429285431	2.9626417	A	3.4923449	P	0.692697225284873	0	lncRNA	28281-1_{1..1234}	n323834|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057290|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057290|-1.2715500|-0.4295435	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323834|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057290|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057290|-1.2715500|-0.4295435	chrX	 75039664	 75040897	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50689_PI429285431	5.3189855	P	4.830418	P	1.40305104770576	0	lncRNA	54360-1_{1..497}	hg19_lincRNAsTranscripts_TCONS_l2_00003553 range=chr10:48943488-48944874 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003553 range=chr10:48943488-48944874 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 48943488	 48943984	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11696_PI429285431	1.2378299	A	1.1320931	A	1.07604379738588	0	lncRNA	13274-1_{1..863}	lnc-PLCXD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLCXD1-2:1	chrX	   288794	   289656	+	lnc-PLCXD1-2	lnc-PLCXD1-2:1	XLOC_007908	linc-SHOX-3	PPP2R3B	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80chrX:294668-298942"	NA	inter
CUST_47558_PI429285431	4.7538686	P	3.8172674	P	1.91401375799303	0	lncRNA	51565-2_{3001..3270}	"gi|299782544|ref|NR_033835.1| Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class A (PIGA), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299782544|ref|NR_033835.1| Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class A (PIGA), transcript variant 4, non-coding RNA"	ChrX	 15340573	 15340842	-	5277	NR_033835.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0007120	0.91650385	A	0.9034846	A	1.00906509779444	0	lncRNA	ENST00000531977	NA	NA	NA	NA	XLOC_008982	NA	ENST00000531977	THC2601177	NA	"BROAD Institute lincRNA (XLOC_008982), lincRNA [TCONS_00019046]"	chr10:127397984-127397925	hs|10q26.13	Agilent_HUMAN_G3V2	ENST00000531977	ENST00000531977	chr10	127397925	127397984	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_284_PI429285431	6.479479	P	6.653498	P	0.886370025805198	0	lncRNA	275-1_{1..441}	"transcript_id ""ENST00000411903.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411903.1"" | genecode_v17"	chr1	 73771922	 73772362	+	ENSG00000233973.1	ENST00000411903.1	RP4-598G3.1	RP4-598G3.1-003	NA	NA	NA	inter
CUST_19509_PI429285431	5.902819	P	5.6100063	P	1.22502628074646	0	lncRNA	21165-1_{1..423}	lnc-AC090186.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC090186.1-1:5	chr8	 52823980	 52824402	+	lnc-AC090186.1-1	lnc-AC090186.1-1:5	ENSG00000228801.4	RP11-110G21.1	LOC100287313	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60chr8:52813980-52834289"	NA	inter
CUST_7024_PI429285431	0.89901197	A	1.3554528	A	0.728781968712201	0	lncRNA	6971-1_{1..425}	"transcript_id ""ENST00000420403.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420403.1"" | genecode_v17"	chrX	 13413379	 13413803	+	ENSG00000226434.1	ENST00000420403.1	RP11-1L9.1	RP11-1L9.1-001	NA	NA	NA	inter
LNCA_21_P0003175	5.5952005	P	5.8776846	P	0.822174139791486	0	lncRNA	TCONS_00006658	NA	NA	NA	NA	XLOC_003250	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003250), lincRNA [TCONS_00006658]"	chr3:129995560-129995501	hs|3q22.1	Agilent_HUMAN_G3V2	TCONS_00006658	TCONS_00006658	chr3	129995501	129995560	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14235_PI429285431	1.2428156	A	1.4461777	A	0.868524168131991	0	lncRNA	15892-1_{1..415}	lnc-ZNF33A-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF33A-4:3	chr10	 37921658	 37922072	+	lnc-ZNF33A-4	lnc-ZNF33A-4:3	XLOC_008456	linc-ZNF33A-3	NA	NA	NA	inter
CUST_40877_PI429285431	8.017281	P	8.502691	P	0.714294045552594	0	lncRNA	41570-2_{3001..6000}	n410678|NR_037928|lncRNA|Homosapiens||RefGeneNoncode|NR_037928||4.9714000|-0.1915328	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410678|NR_037928|lncRNA|Homosapiens||RefGeneNoncode|NR_037928||4.9714000|-0.1915328	chr17	  3569186	  3572185	-	NA	NA	NA	NA	CTNS	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_EMC6:range=chr17:3572441-35727735'pad=0,hg19_refFlat_EMC6:range=chr17:3572441-35727735'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80chr17:3556186-3566397"	NA	inner
CUST_3731_PI429285431	3.6081815	P	3.4940655	P	1.08231166437557	0	lncRNA	3700-1_{1..322}	"transcript_id ""ENST00000599110.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599110.1"" | genecode_v17"	chr10	 75880800	 75881121	+	ENSG00000269772.1	ENST00000599110.1	RP11-178G16.5	RP11-178G16.5-001	VCL	NA	chr10:75870800-75879918	inner
CUST_25734_PI429285431	0.9120751	A	0.90191805	A	1.00706517196056	0	lncRNA	27261-1_{1..454}	lnc-JPH1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JPH1-3:2	chr8	 75779100	 75779553	-	lnc-JPH1-3	lnc-JPH1-3:2	ENSG00000253706.1	RP11-758M4.4	NA	NA	NA	inter
CUST_35941_PI429285431	4.3738785	P	4.8535113	P	0.717160134991641	0	lncRNA	37303-1_{1..3000}	n344578|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_126|NULL|-1.6182700|-0.3297893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344578|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_126|NULL|-1.6182700|-0.3297893	chrX	135998785	136001784	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50790_PI429285431	4.627442	P	4.6311812	P	0.997411539917498	0	lncRNA	54445-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00004349 range=chr11:3422780-3433649 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004349 range=chr11:3422780-3433649 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	  3422780	  3425779	+	NA	NA	NA	NA	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0,hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0,hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0,hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0,hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80"	NA	inter
LNCA_21_P0009680	2.5159523	A	2.7701483	A	0.838454266949483	0	lncRNA	TCONS_00026883	NA	NA	NA	NA	XLOC_012946	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012946), lincRNA [TCONS_00026883]"	chr19:8020727-8020786	hs|19p13.2	Agilent_HUMAN_G3V2	TCONS_00026883	TCONS_00026883	chr19	  8020727	  8020786	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16783_PI429285431	0.9307374	A	0.94004333	A	0.993570379895014	0	lncRNA	18492-1_{1..399}	lnc-C1orf94-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf94-1:1	chr1	 34833587	 34833985	+	lnc-C1orf94-1	lnc-C1orf94-1:1	XLOC_000136	linc-GJB5	NA	NA	NA	inter
CUST_14713_PI429285431	5.1425114	P	4.852642	P	1.22252960316378	0	lncRNA	16377-1_{1..372}	lnc-ADAM11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAM11-1:1	chr17	 42835674	 42836045	+	lnc-ADAM11-1	lnc-ADAM11-1:1	XLOC_012216	linc-ADAM11	DBF4B	NA	chr17:42825674-42829637	inter
CUST_39833_PI429285431	4.661422	P	4.2129316	P	1.36461161398128	0	lncRNA	40739-1_{1..1184}	n406432|NR_021491|lncRNA|Homosapiens||RefGeneNoncode|NR_021491||-1.0940000|-0.3017267	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406432|NR_021491|lncRNA|Homosapiens||RefGeneNoncode|NR_021491||-1.0940000|-0.3017267	chr5	 92746501	 92747684	-	NA	NA	NA	NA	NR2F1	NA	chr5:92919043-92926953	inter
CUST_10784_PI429285431	2.480272	A	1.6352309	A	1.79631591911398	0	lncRNA	12320-1_{1..434}	lnc-NELL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NELL1-1:1	chr11	 21864351	 21864784	+	lnc-NELL1-1	lnc-NELL1-1:1	XLOC_009085	linc-ANO5-3	NA	NA	NA	inter
CUST_2647_PI429285431	8.917243	P	9.31156	P	0.760849492375625	0	lncRNA	2634-1_{1..786}	"transcript_id ""ENST00000445585.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445585.1"" | genecode_v17"	chr6	140177241	140178026	-	ENSG00000225148.1	ENST00000445585.1	RP5-899B16.2	RP5-899B16.2-001	NA	NA	NA	inter
CUST_33747_PI429285431	2.7378201	A	2.8073654	A	0.952938292114203	0	lncRNA	35303-2_{3001..4257}	n340525|AL832324|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2987|NULL|-0.4978800|-0.2907856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340525|AL832324|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2987|NULL|-0.4978800|-0.2907856	chr5	 79028108	 79029364	-	NA	NA	NA	NA	CMYA5	"hg19_refFlat_CMYA5:range=chr5:78985731-790954395'pad=0,hg19_refFlat_CMYA5:range=chr5:78985731-790954395'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.70chr5:79015108-79039333"	NA	inner
LNCA_21_P0006320	5.2045937	P	5.2140837	P	0.993443620719918	0	lncRNA	ENST00000414976	NA	NA	NA	NA	XLOC_007857	NA	ENST00000414976	NA	NA	"BROAD Institute lincRNA (XLOC_007857), lincRNA [TCONS_00016479]"	chr9:130819626-130819567	hs|9q34.11	Agilent_HUMAN_G3V2	ENST00000414976	ENST00000414976	chr9	130819567	130819626	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51662_PI429285431	0.9048912	A	2.2929041	A	0.382090713674216	0	lncRNA	55231-1_{1..251}	hg19_lincRNAsTranscripts_TCONS_l2_00011417 range=chr17:62970515-62971642 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011417 range=chr17:62970515-62971642 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 62970515	 62970765	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38865_PI429285431	11.766612	P	11.0633	P	1.62823845804359	0	lncRNA	39855-1_{1..1636}	n384738|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003laf.1||5.0489900|-0.2660043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384738|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003laf.1||5.0489900|-0.2660043	chr5	134262361	134263996	-	NA	NA	NA	NA	PCBD2	NA	chr5:134252361-134273997	inner
CUST_26687_PI429285431	0.9287247	A	0.93064827	A	0.998667571350249	0	lncRNA	28195-1_{1..238}	n315|AC099412|scaRNA|Homosapiens|U90|NONCODEv2.0|n315|NULL|-1.2173300|-0.4018912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n315|AC099412|scaRNA|Homosapiens|U90|NONCODEv2.0|n315|NULL|-1.2173300|-0.4018912	chr7	 15494575	 15494812	-	NA	NA	NA	NA	AGMO	NA	chr7:15484575-15504813	inner
CUST_24793_PI429285431	2.9120204	A	2.7895153	A	1.08862351145705	0	lncRNA	26336-1_{1..429}	lnc-ALPK3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ALPK3-1:1	chr15	 85297701	 85298129	+	lnc-ALPK3-1	lnc-ALPK3-1:1	ENSG00000259415.1	RP11-7M10.2	ZNF592	NA	chr15:85291818-85307733	inner
CUST_5079_PI429285431	4.147541	P	3.9584913	P	1.14001254478212	0	lncRNA	5019-1_{1..359}	"transcript_id ""ENST00000497872.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000497872.2"" | genecode_v17"	chr14	106170301	106170659	-	ENSG00000253701.1	ENST00000497872.2	AL928768.3	AL928768.3-001	NA	NA	NA	inter
CUST_51716_PI429285431	3.1664143	A	2.699247	A	1.38239250433945	0	lncRNA	55273-1_{1..830}	hg19_lincRNAsTranscripts_TCONS_l2_00011971 range=chr18:11620114-11621549 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011971 range=chr18:11620114-11621549 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 11620114	 11620943	-	NA	NA	NA	NA	AMAC1L1	NA	chr18:11610114-11610611	inter
CUST_4844_PI429285431	3.5999718	P	4.0637503	P	0.725084731675867	0	lncRNA	4787-1_{1..624}	"transcript_id ""ENST00000551408.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551408.2"" | genecode_v17"	chr14	 57533726	 57534349	-	ENSG00000258592.1	ENST00000551408.2	RP11-108M12.3	RP11-108M12.3-002	NA	NA	NA	inter
CUST_159_PI429201921	6.044272	P	6.0606136	P	0.988736776481099	0	lncRNA	137-2_{3001..4109}	TC07002781.hg.1	 TCONS_l2_00026375-XLOC_l2_013715 // Broad TUCP // linc-C7orf28B-1 chr7:-:6897190-6899423 // chr7 // 100 // 100 // 0 // --- // 0///TCONS_l2_00026374-XLOC_l2_013715 // Broad TUCP // linc-C7orf28B-1 chr7:-:6895313-6899319 // chr7 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr7:-:6895313-6899319	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00026374-XLOC_l2_013715	linc-C7orf28B-1	chr7	  6895313	  6899319	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15787_PI429285431	0.9182467	A	0.907637	A	1.00738119132467	0	lncRNA	17477-1_{1..461}	lnc-ANKRD10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD10-1:1	chr13	111612217	111612677	-	lnc-ANKRD10-1	lnc-ANKRD10-1:1	XLOC_010724	linc-ANKRD10-3	NA	NA	NA	inter
LNCA_21_P0014605	0.96473724	A	0.92302084	A	1.0293377198968	0	lncRNA	XR_110496	XR_110496	XR_110496	NA	NA	LOC100506594	uncharacterized LOC100506594	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506594 (LOC100506594), miscRNA [XR_110496]"	chr1:36833590-36843420	hs|1p34.3	Agilent_HUMAN_G3V2	XR_110496	XR_110496	chr1	 36833590	 36843420	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9326_PI429285431	1.9569092	A	1.846745	A	1.07935107560508	0	lncRNA	10834-1_{1..1321}	lnc-TMEM17-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM17-2:1	chr2	 62889743	 62891063	-	lnc-TMEM17-2	lnc-TMEM17-2:1	XLOC_002117	linc-TMEM17	NA	NA	NA	inter
CUST_30972_PI429285431	2.0904522	A	2.2069914	A	0.922397686736765	0	lncRNA	32760-1_{1..237}	n337117|DQ471869|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343469|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343469|-1.3376300|-0.5059647	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337117|DQ471869|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343469|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343469|-1.3376300|-0.5059647	chr11	 27148998	 27149234	+	NA	NA	NA	NA	BBOX1	NA	chr11:27138998-27149354	inner
CUST_41474_PI429285431	7.414811	P	7.8459263	P	0.741688188928268	0	lncRNA	42671-1_{1..119}	ENST00000579664 ncrna:miRNA chromosome:GRCh37:X:68724548:68724666:1 gene:ENSG00000264604 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579664 ncrna:miRNA chromosome:GRCh37:X:68724548:68724666:1 gene:ENSG00000264604 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 68724548	 68724666	+	ENSG00000264604	ENST00000579664	NA	NA	FAM155B	NA	chrX:68725078-68734666	inter
CUST_4989_PI429285431	8.347557	P	8.561743	P	0.862032400002108	0	lncRNA	4933-1_{1..478}	"transcript_id ""ENST00000556458.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556458.1"" | genecode_v17"	chr14	100757455	100757932	+	ENSG00000258504.2	ENST00000556458.1	RP11-638I2.6	RP11-638I2.6-001	SLC25A29	NA	chr14:100757453-100770993	inner
LNCA_19_P00316105	0.9795135	A	0.9248619	A	1.0386082569288	0	lncRNA	ENST00000422861	XR_109604	XR_109604	NA	Hs.709356	L3MBTL1	l(3)mbt-like 1 (Drosophila)	ENST00000422861	THC2682070	GO:0005515|GO:0030097|GO:0000793|GO:0007088|GO:0003700|GO:0005730|GO:0031491|GO:0005634|GO:0035064|GO:0031493|GO:0046872|GO:0032093|GO:0042802|GO:0045652|GO:0042393|GO:0003682|GO:0051726|GO:0005654|GO:0008270|GO:0045892|GO:0000785|GO:0016568	"PREDICTED: Homo sapiens hypothetical LOC100505763 (LOC100505763), miscRNA [XR_109604]"	chr20:42179487-42179546	hs|20q13.12	Agilent_HUMAN_G3V2	ENST00000422861	ENST00000422861	chr20	 42179487	 42179546	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001418	0.9815335	A	0.990417	A	0.993861346022362	0	lncRNA	TCONS_00001268	NA	NA	NA	NA	XLOC_000555	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000555), lincRNA [TCONS_00001268]"	chr1:212734674-212734733	hs|1q32.3	Agilent_HUMAN_G3V2	TCONS_00001268	TCONS_00001268	chr1	212734674	212734733	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36041_PI429285431	3.9648042	P	4.7664375	P	0.573699314793981	0	lncRNA	37362-4_{9001..12000}	n344643|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_191|NULL|-1.3262900|-0.2857767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344643|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_191|NULL|-1.3262900|-0.2857767	chr2	216484716	216487715	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_TBX1:range=chr22:19747167-197543905'pad=0,hg19_refFlat_TBX1:range=chr22:19747167-197543905'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40"	NA	inter
CUST_35606_PI429285431	3.4059124	P	3.9148655	P	0.702732194573803	0	lncRNA	37019-1_{1..597}	n342743|AF085962|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5246|NULL|-0.8778610|-0.2183834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n342743|AF085962|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5246|NULL|-0.8778610|-0.2183834	chr11	  1709526	  1710122	+	NA	NA	NA	NA	KRTAP5-6	NA	chr11:1718425-1718985	inner
CUST_17868_PI429285431	1.3444413	A	0.8984323	A	1.36226653287484	0	lncRNA	19605-1_{1..413}	lnc-ZFC3H1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFC3H1-2:1	chr12	 72102026	 72102438	-	lnc-ZFC3H1-2	lnc-ZFC3H1-2:1	XLOC_010126	linc-ZFC3H1-2	TMEM19	NA	chr12:72092026-72097840	inter
CUST_24006_PI429285431	0.91532516	A	0.9067517	A	1.0059603623177	0	lncRNA	25559-1_{1..592}	lnc-WNT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WNT2-1:1	chr7	116786186	116786777	-	lnc-WNT2-1	lnc-WNT2-1:1	ENSG00000226367.1	ST7-AS2	ST7	NA	chr7:116776186-116796534	inner
CUST_49956_PI429285431	12.966835	P	12.868771	P	1.07033617900577	0	lncRNA	53705-1_{1..668}	hg19_lincRNAsTranscripts_TCONS_l2_00026230 range=chr7:135344960-135345928 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026230 range=chr7:135344960-135345928 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	135344960	135345627	+	NA	NA	NA	NA	PL-5283	NA	chr7:135344786-135355928	inter
CUST_12809_PI429285431	0.92749095	A	0.91030264	A	1.01198528334982	0	lncRNA	14437-1_{1..735}	lnc-UFM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UFM1-1:1	chr13	 38446342	 38447076	+	lnc-UFM1-1	lnc-UFM1-1:1	XLOC_010350	linc-UFM1-2	TRPC4	NA	chr13:38436342-38443939	inter
CUST_19144_PI429285431	5.116781	P	2.7808042	A	5.04892693592792	0	lncRNA	20818-2_{3001..3932}	lnc-NOL6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-NOL6-3:1	NA	     3000	     3931	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43975_PI429285431	10.771957	P	10.975155	P	0.868622964425062	0	lncRNA	48676-2_{3001..3798}	"gi|223941905|ref|NR_026922.1| Homo sapiens sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene (LOC150776), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223941905|ref|NR_026922.1| Homo sapiens sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene (LOC150776), non-coding RNA"	Chr2	132253386	132254183	+	150776	NR_026922.1	NA	NA	NA	NA	NA	inter
CUST_35235_PI429285431	10.1199045	P	9.889025	P	1.17355015430855	0	lncRNA	36636-1_{1..389}	n342228|BC070363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4718|NULL|-1.2349600|-0.2226406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342228|BC070363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4718|NULL|-1.2349600|-0.2226406	chr1	 17215040	 17215428	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23627_PI429285431	3.4530733	P	3.360741	P	1.06609226381513	0	lncRNA	25193-1_{1..402}	lnc-DPP4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DPP4-1:1	chr2	162279873	162280274	-	lnc-DPP4-1	lnc-DPP4-1:1	ENSG00000224076.1	AC009487.4	TBR1	"hg19_refFlat_TBR1:range=chr2:162272922-1622807385'pad=0,hg19_refFlat_TBR1:range=chr2:162272922-1622807385'pad=0 3'pad=0 strand=+ repeatMasking=none,-111.80chr2:162272620-162281573"	NA	inner
CUST_272_PI429201921	2.9535537	A	3.9929364	P	0.486535607911259	0	lncRNA	196-1_{1..3000}	TC20001162.hg.1	TCONS_l2_00016200-XLOC_l2_008587 // Broad TUCP // linc-TMEM90B-4 chr20:+:23969935-23976596 // chr20 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr20:+:23969935-23976596	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00016200-XLOC_l2_008587	linc-TMEM90B-4	chr20	 23969935	 23976596	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27277_PI429285431	1.7132494	A	0.92739606	A	1.72411181315118	0	lncRNA	28833-1_{1..602}	n324426|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317440|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317440|-0.7577040|-0.2063259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324426|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317440|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317440|-0.7577040|-0.2063259	chr6	109179713	109180314	+	NA	NA	NA	NA	ARMC2	NA	chr6:109169713-109206352	inner
CUST_23439_PI429285431	5.852505	P	6.3317356	P	0.717360095488007	0	lncRNA	25007-1_{1..522}	lnc-RP4-604K5.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP4-604K5.1.1-3:1	chr1	 87158846	 87159367	-	lnc-RP4-604K5.1.1-3	lnc-RP4-604K5.1.1-3:1	ENSG00000236915.1	RP4-651E10.4	NA	"hg19_refFlat_CLCA4:range=chr1:87012803-870460285'pad=0,hg19_refFlat_CLCA4:range=chr1:87012803-870460285'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_47972_PI429285431	5.6409597	P	5.77197	P	0.913191730333105	0	lncRNA	51862-1_{1..1125}	"gi|410172716|ref|XR_171941.1| PREDICTED: Homo sapiens uncharacterized LOC101060720 (LOC101060720), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|410172716|ref|XR_171941.1| PREDICTED: Homo sapiens uncharacterized LOC101060720 (LOC101060720), misc_RNA"	NA	NA	NA	NA	NA	XR_171941.1	NA	NA	NA	NA	NA	Unknown
CUST_41604_PI429285431	5.086292	P	5.563861	P	0.718186779005792	0	lncRNA	42957-1_{1..83}	ENST00000385065 ncrna:miRNA chromosome:GRCh37:X:137749872:137749954:-1 gene:ENSG00000207800 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385065 ncrna:miRNA chromosome:GRCh37:X:137749872:137749954:-1 gene:ENSG00000207800 gene_biotype:miRNA transcript_biotype:miRNA	chrX	137749872	137749954	-	ENSG00000207800	ENST00000385065	NA	NA	FGF13	NA	chrX:137739872-137759954	inner
CUST_51689_PI429285431	3.284056	A	4.4071817	P	0.459098078834669	0	lncRNA	55251-1_{1..761}	hg19_lincRNAsTranscripts_TCONS_l2_00011484 range=chr17:76521088-76525954 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011484 range=chr17:76521088-76525954 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 76521088	 76521848	-	NA	NA	NA	NA	DNAH17	NA	chr17:76511088-76535954	inner
CUST_28473_PI429285431	0.90085953	A	0.9008503	A	1.00000639776894	0	lncRNA	30140-1_{1..559}	n325815|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000133438|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000133438|-1.1362100|-0.4853163	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325815|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000133438|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000133438|-1.1362100|-0.4853163	chr12	 38846320	 38846878	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20419_PI429285431	4.234518	P	4.1735096	P	1.04319466744669	0	lncRNA	22061-1_{1..547}	lnc-C2orf42-3:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:17	chr2	 70313256	 70313802	-	lnc-C2orf42-3	lnc-C2orf42-3:17	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_26663_PI429285431	4.7607107	P	4.9581056	P	0.8721239519949	0	lncRNA	28163-1_{1..674}	lnc-C22orf43-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C22orf43-1:1	chr22	 23980938	 23981611	-	lnc-C22orf43-1	lnc-C22orf43-1:1	ENSG00000211683.2	AP000346.2	C22orf43	NA	chr22:23970938-23974508	inter
CUST_12236_PI429285431	0.90555626	A	0.905061	A	1.00034334700274	0	lncRNA	13842-1_{1..353}	lnc-GARS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GARS-2:1	chr7	 30590252	 30590604	+	lnc-GARS-2	lnc-GARS-2:1	XLOC_006037	linc-GARS-1	NA	NA	NA	inter
LNCA_21_P0007738	0.9289564	A	0.9245471	A	1.00306096909108	0	lncRNA	THC2653478	NA	NA	NA	NA	XLOC_010150	NA	NA	THC2653478	NA	"BROAD Institute lincRNA (XLOC_010150), lincRNA [TCONS_00020868]"	chr12:091299378-091299319	hs|12q21.33	Agilent_HUMAN_G3V2	THC2653478	THC2653478	chr12	 91299319	 91299378	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32945_PI429285431	1.835827	A	1.6530102	A	1.13509795307583	0	lncRNA	34566-1_{1..1101}	n339620|BC019657|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2064|NULL|1.3808900|-0.3910949	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339620|BC019657|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2064|NULL|1.3808900|-0.3910949	chr3	141053583	141054683	+	NA	NA	NA	NA	ZBTB38	NA	chr3:141043583-141064644	inner
LNCA_21_P0009651	0.92947215	A	0.92359924	A	1.00407908793243	0	lncRNA	XR_109511	XR_109511	XR_109511	NA	Hs.157101	LOC728485	uncharacterized LOC728485	NA	THC2524981	NA	"PREDICTED: Homo sapiens hypothetical LOC728485 (LOC728485), miscRNA [XR_109511]"	chr19:37266392-37266451	hs|19q13.12	Agilent_HUMAN_G3V2	XR_109511	XR_109511	chr19	 37266392	 37266451	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34702_PI429285431	2.308254	A	2.7860482	A	0.718074681136526	0	lncRNA	36151-1_{1..1573}	n341607|BC017718|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4078|NULL|3.0153000|-0.2628515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341607|BC017718|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4078|NULL|3.0153000|-0.2628515	chr8	129029971	129031543	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23137_PI429285431	2.0953677	A	3.2739	P	0.441800727668302	0	lncRNA	24708-1_{1..922}	lnc-CTD-2517M22.14.1-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2517M22.14.1-2:8	chr8	145739826	145740747	-	lnc-CTD-2517M22.14.1-2	lnc-CTD-2517M22.14.1-2:8	ENSG00000160957.7	RECQL4	LRRC24	NA	chr8:145747761-145749898	inner
CUST_50024_PI429285431	0.9216284	A	0.91810954	A	1.00244206488254	0	lncRNA	53761-1_{1..1034}	hg19_lincRNAsTranscripts_TCONS_l2_00028090 range=chr8:8271720-8282139 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028090 range=chr8:8271720-8282139 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	  8271720	  8272753	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010007	4.7547493	P	4.3262477	P	1.34583505065109	0	lncRNA	TCONS_00028323	NA	NA	NA	NA	XLOC_013664	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013664), lincRNA [TCONS_00028323]"	chr20:17206167-17206108	hs|20p12.1	Agilent_HUMAN_G3V2	TCONS_00028323	TCONS_00028323	chr20	 17206108	 17206167	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26619_PI429285431	0.9195039	A	2.2651725	A	0.393471596253893	0	lncRNA	28122-1_{1..678}	lnc-ZNF705A-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF705A-1:6	chr12	  8368402	  8369079	+	lnc-ZNF705A-1	lnc-ZNF705A-1:6	ENSG00000226711.2	FAM66C	FAM90A1	NA	chr12:8373856-8378631	inter
CUST_13360_PI429285431	2.8308327	A	3.5639267	P	0.601612313170122	0	lncRNA	14997-1_{1..526}	lnc-RGS18-5:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGS18-5:8	chr1	190449475	190450000	+	lnc-RGS18-5	lnc-RGS18-5:8	XLOC_000505	linc-RGS18-3	FAM5C	NA	chr1:190439475-190446759	inter
CUST_24184_PI429285431	0.9212415	A	0.9051412	A	1.01122238127957	0	lncRNA	25735-1_{1..499}	lnc-SDF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SDF2-1:1	chr17	 26999663	 27000161	-	lnc-SDF2-1	lnc-SDF2-1:1	ENSG00000265205.1	AC010761.13	SUPT6H	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90chr17:26989663-27009822"	NA	inner
CUST_51881_PI429285431	1.0890237	A	1.3793387	A	0.817723496202917	0	lncRNA	55431-2_{3001..5597}	hg19_lincRNAsTranscripts_TCONS_l2_00012689 range=chr19:53703887-53719504 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012689 range=chr19:53703887-53719504 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 53706887	 53709483	+	NA	NA	NA	NA	ZNF665	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50chr19:53693887-53696619"	NA	inter
CUST_50690_PI429285431	1.414432	A	1.9274936	A	0.700733804063314	0	lncRNA	54361-1_{1..234}	hg19_lincRNAsTranscripts_TCONS_l2_00003049 range=chr10:48949292-48966917 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003049 range=chr10:48949292-48966917 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 48949292	 48949525	+	NA	NA	NA	NA	FAM25C	NA	chr10:48962451-48976917	inter
CUST_47946_PI429285431	8.114096	P	7.4340534	P	1.60218706397238	0	lncRNA	51838-1_{1..662}	"gi|410172452|ref|XR_171785.1| PREDICTED: Homo sapiens uncharacterized LOC101060493, transcript variant 4 (LOC101060493), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172452|ref|XR_171785.1| PREDICTED: Homo sapiens uncharacterized LOC101060493, transcript variant 4 (LOC101060493), misc_RNA"	NA	NA	NA	NA	NA	XR_171785.1	NA	NA	NA	NA	NA	Unknown
CUST_13843_PI429285431	0.90437853	A	1.9745747	A	0.476254236100509	0	lncRNA	15486-1_{1..1329}	lnc-SSTR4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SSTR4-2:2	chr20	 23170420	 23171748	+	lnc-SSTR4-2	lnc-SSTR4-2:2	XLOC_013489	linc-NXT1	NA	NA	NA	inter
CUST_8433_PI429285431	3.194905	A	3.3555713	P	0.894611804438844	0	lncRNA	10003-2_{3001..6000}	lnc-ZNF83-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF83-1:2	chr19	 52903715	 52906714	-	lnc-ZNF83-1	lnc-ZNF83-1:2	ENSG00000246015	AC010332.1	ZNF528	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF880:range=chr19:52873219-528885675'pad=0,hg19_refFlat_ZNF880:range=chr19:52873219-528885675'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF528:range=chr19:52905267-529199925'pad=0,hg19_refFlat_ZNF528:range=chr19:52905267-529199925'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF534:range=chr19:52934728-529426995'pad=0,hg19_refFlat_ZNF534:range=chr19:52934728-529426995'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF766:range=chr19:52772867-527944515'pad=0,hg19_refFlat_ZNF766:range=chr19:52772867-527944515'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF480:range=chr19:52803666-528261115'pad=0,hg19_refFlat_ZNF480:range=chr19:52803666-528261115'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60chr19:52901121-52910985"	NA	inter
CUST_21189_PI429285431	0.9009308	A	0.89564204	A	1.0036726166724	0	lncRNA	22814-1_{1..570}	lnc-HSPA4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSPA4-1:2	chr5	132559776	132560345	+	lnc-HSPA4-1	lnc-HSPA4-1:2	ENSG00000248245.1	CTB-49A3.2	FSTL4	NA	chr5:132549776-132570105	inner
CUST_324_PI429201921	6.295139	P	6.5188537	P	0.856357616709592	0	lncRNA	216-2_{3001..6000}	TC0Y000290.hg.1	 TCONS_l2_00031013-XLOC_l2_015918 // Broad TUCP // linc-SRY-2 chrY:-:6126373-6131976 // chrY // 100 // 100 // 0 // --- // 0///TCONS_l2_00031012-XLOC_l2_015918 // Broad TUCP // linc-SRY-2 chrY:-:6124307-6131994 // chrY // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:6124307-6131994	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031012-XLOC_l2_015918	linc-SRY-2	chrY	  6124307	  6131994	-	NA	NA	NA	NA	LOC388630	NA	chr1:48273738-48295909	Unknown
CUST_37694_PI429285431	6.0850816	P	6.165214	P	0.945970828457411	0	lncRNA	38786-1_{1..1345}	n346186|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1736|NULL|-1.5222200|-0.3940056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346186|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1736|NULL|-1.5222200|-0.3940056	chr17	 36351762	 36353106	-	NA	NA	NA	NA	TBC1D3	NA	chr17:36341762-36348666	inter
CUST_45491_PI429285431	1.1580677	A	0.91299045	A	1.18515622916734	0	lncRNA	49904-1_{1..1394}	"gi|213511863|ref|NR_024475.1| Homo sapiens uncharacterized LOC100216001 (LOC100216001), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|213511863|ref|NR_024475.1| Homo sapiens uncharacterized LOC100216001 (LOC100216001), non-coding RNA"	Chr10	  4692377	  4693770	-	100216001	NR_024475.1	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20"	NA	inter
CUST_13049_PI429285431	8.7800045	P	9.058366	P	0.824526918782244	0	lncRNA	14674-1_{1..1289}	lnc-RABL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RABL3-1:1	chr3	120555116	120556404	-	lnc-RABL3-1	lnc-RABL3-1:1	XLOC_003226	linc-RABL3-2	NA	NA	NA	inter
CUST_24019_PI429285431	6.896889	P	6.972478	P	0.948954618140811	0	lncRNA	25573-1_{1..3000}	lnc-CDK5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK5-2:1	chr7	150720961	150723960	-	lnc-CDK5-2	lnc-CDK5-2:1	ENSG00000181652.11	ATG9B	ABCB8	"hg19_refFlat_NOS3:range=chr7:150690892-1507112575'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507112575'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.60chr7:150725510-150731586"	NA	inter
CUST_33531_PI429285431	3.0798376	P	2.986574	A	1.06678067836074	0	lncRNA	35099-1_{1..2332}	n340271|AK021429|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2732|NULL|7.4456300|-0.1607548	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340271|AK021429|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2732|NULL|7.4456300|-0.1607548	chr4	170037422	170039753	-	NA	NA	NA	NA	SH3RF1	NA	chr4:170027422-170192249	inner
CUST_12443_PI429285431	0.91238606	A	0.91603327	A	0.997475139507286	0	lncRNA	14056-1_{1..481}	lnc-ABI1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABI1-5:1	chr10	 26222483	 26222963	-	lnc-ABI1-5	lnc-ABI1-5:1	XLOC_008751	linc-ENKUR-3	MYO3A	NA	chr10:26223002-26232639	inter
CUST_33325_PI429285431	4.3336067	P	4.228194	P	1.07580209237194	0	lncRNA	34907-1_{1..1318}	n340041|BC041470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2496|NULL|-1.0128200|-0.2505929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340041|BC041470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2496|NULL|-1.0128200|-0.2505929	chr10	 63212396	 63213713	+	NA	NA	NA	NA	TMEM26	"hg19_refFlat_TMEM26:range=chr10:63170080-632128395'pad=0,hg19_refFlat_TMEM26:range=chr10:63170080-632128395'pad=0 3'pad=0 strand=- repeatMasking=none,-95.40chr10:63202396-63213208"	NA	inner
CUST_46513_PI429285431	0.97398955	A	1.340998	A	0.77538866480966	0	lncRNA	50704-1_{1..1512}	"gi|223468580|ref|NR_026813.1| Homo sapiens long intergenic non-protein coding RNA 597 (LINC00597), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223468580|ref|NR_026813.1| Homo sapiens long intergenic non-protein coding RNA 597 (LINC00597), non-coding RNA"	Chr15	 77516235	 77517746	-	81698	NR_026813.1	NA	NA	NA	NA	NA	inter
CUST_42154_PI429285431	1.0670308	A	0.92252576	A	1.10535136417266	0	lncRNA	44188-1_{1..88}	ENST00000580680 ncrna:miRNA chromosome:GRCh37:22:33832568:33832655:-1 gene:ENSG00000266012 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580680 ncrna:miRNA chromosome:GRCh37:22:33832568:33832655:-1 gene:ENSG00000266012 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 33832568	 33832655	-	ENSG00000266012	ENST00000580680	NA	NA	LARGE	NA	chr22:33822568-33842655	inner
CUST_36782_PI429285431	2.3579538	A	2.5321107	A	0.886285306178677	0	lncRNA	37954-1_{1..1437}	n345261|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_810|NULL|-1.4887800|-0.4585351	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345261|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_810|NULL|-1.4887800|-0.4585351	chr14	 59886338	 59887774	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23915_PI429285431	0.90259016	A	0.8962021	A	1.00443768326074	0	lncRNA	25472-1_{1..338}	lnc-FAM98A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM98A-1:1	chr2	 33788545	 33788882	-	lnc-FAM98A-1	lnc-FAM98A-1:1	ENSG00000237133.1	AC020594.5	RASGRP3	NA	chr2:33778545-33789798	inner
CUST_13825_PI429285431	0.92450583	A	0.92574054	A	0.999144530367656	0	lncRNA	15468-1_{1..2066}	lnc-LYPD5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYPD5-1:2	chr19	 44331151	 44333216	-	lnc-LYPD5-1	lnc-LYPD5-1:2	XLOC_013348	linc-LYPD5-2	LYPD5	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20chr19:44321151-44324808"	NA	inter
CUST_9553_PI429285431	0.909057	A	0.89882463	A	1.00711775003609	0	lncRNA	11068-1_{1..443}	lnc-NPL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NPL-1:1	chr1	182683448	182683890	+	lnc-NPL-1	lnc-NPL-1:1	XLOC_000486	linc-NPL	NA	NA	NA	inter
CUST_31365_PI429285431	0.90486234	A	0.8973752	A	1.00520317974832	0	lncRNA	33144-1_{1..1514}	n337831|AK021726|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|214|NULL|-0.7290310|-0.3037031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337831|AK021726|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|214|NULL|-0.7290310|-0.3037031	chr15	 62786318	 62787831	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003623	1.6216351	A	0.90092486	A	1.64799314329504	0	lncRNA	THC2668863	NA	NA	NA	NA	XLOC_003578	NA	NA	THC2668863	NA	"BROAD Institute lincRNA (XLOC_003578), lincRNA [TCONS_00008111]"	chr4:076746358-076746417	hs|4q21.1	Agilent_HUMAN_G3V2	THC2668863	THC2668863	chr4	 76746358	 76746417	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_251_PI429285431	0.90583515	A	0.8968226	A	1.00626657696976	0	lncRNA	243-1_{1..338}	"transcript_id ""ENST00000604999.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604999.1"" | genecode_v17"	chr1	 59754975	 59755312	-	ENSG00000270457.1	ENST00000604999.1	RP11-467C18.1	RP11-467C18.1-001	FGGY	NA	chr1:59762625-59765312	inter
CUST_43679_PI429285431	2.321991	A	0.9249024	A	2.63369558187795	0	lncRNA	48432-1_{1..1449}	"gi|410170413|ref|XR_132473.3| PREDICTED: Homo sapiens uncharacterized LOC100509205 (LOC100509205), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410170413|ref|XR_132473.3| PREDICTED: Homo sapiens uncharacterized LOC100509205 (LOC100509205), misc_RNA"	NA	NA	NA	NA	NA	XR_132473.3	NA	NA	NA	NA	NA	Unknown
CUST_22522_PI429285431	0.9138159	A	0.9024119	A	1.00793597467775	0	lncRNA	24109-1_{1..363}	lnc-FOXA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXA1-1:1	chr14	 38036148	 38036510	-	lnc-FOXA1-1	lnc-FOXA1-1:1	ENSG00000259087.1	RP11-356O9.2	NA	NA	NA	inter
CUST_21976_PI429285431	10.511089	P	10.526514	P	0.989365158821621	0	lncRNA	23584-1_{1..617}	lnc-SPNS1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPNS1-1:4	chr16	 29001510	 29002126	+	lnc-SPNS1-1	lnc-SPNS1-1:4	ENSG00000261067.1	RP11-264B17.3	LAT	NA	chr16:28996147-29002104	inner
CUST_13897_PI429285431	5.5679293	P	5.795991	P	0.853781199795297	0	lncRNA	15544-1_{1..487}	lnc-FAM27D1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM27D1.1-4:1	chr9	 47209804	 47210290	+	lnc-FAM27D1.1-4	lnc-FAM27D1.1-4:1	XLOC_007369	linc-ANKRD20A1-10	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40"	NA	inter
CUST_46540_PI429285431	0.9042024	A	1.1797155	A	0.826156440205393	0	lncRNA	50726-1_{1..2689}	"gi|333805649|ref|NR_038273.1| Homo sapiens uncharacterized LOC100506874 (LOC100506874), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333805649|ref|NR_038273.1| Homo sapiens uncharacterized LOC100506874 (LOC100506874), transcript variant 1, non-coding RNA"	Chr15	 85114365	 85117053	+	100506874	NR_038273.1	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00"	NA	inter
CUST_16459_PI429285431	0.904961	A	0.896935	A	1.00557870260028	0	lncRNA	18157-1_{1..236}	lnc-CTSO-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTSO-1:5	chr4	157064904	157065139	-	lnc-CTSO-1	lnc-CTSO-1:5	XLOC_004134	linc-CTSO-1	NA	NA	NA	inter
CUST_10300_PI429285431	4.867583	P	5.4567933	P	0.66470665350264	0	lncRNA	11827-1_{1..496}	lnc-IFI44-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IFI44-2:1	chr1	 79775231	 79775726	+	lnc-IFI44-2	lnc-IFI44-2:1	XLOC_000266	linc-LPHN2-2	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60"	NA	inter
CUST_27726_PI429285431	5.5550547	P	5.6299047	P	0.949440831154162	0	lncRNA	29307-1_{1..2290}	n324940|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000259284|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000259284|-1.2323100|-0.2963908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324940|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000259284|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000259284|-1.2323100|-0.2963908	chr20	 53470280	 53472569	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49594_PI429285431	3.8702726	P	3.5695794	P	1.23173610760319	0	lncRNA	53383-1_{1..350}	hg19_lincRNAsTranscripts_TCONS_l2_00024982 range=chr6:150321841-150322530 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024982 range=chr6:150321841-150322530 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	150321841	150322190	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009977	7.8851123	P	7.9706583	P	0.942427798737733	0	lncRNA	TCONS_00028226	NA	NA	NA	NA	XLOC_013570	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013570), lincRNA [TCONS_00028226]"	chr20:52464678-52464737	hs|20q13.2	Agilent_HUMAN_G3V2	TCONS_00028226	TCONS_00028226	chr20	 52464678	 52464737	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014092	0.9167987	A	0.9038376	A	1.0090244267231	0	lncRNA	XR_108408	XR_108408	XR_108408	NA	Hs.333185	LOC100506923	uncharacterized LOC100506923	NA	THC2667101	NA	"PREDICTED: Homo sapiens hypothetical LOC100506923 (LOC100506923), miscRNA [XR_108408]"	chr2:186085057-186085116	hs|2q32.1	Agilent_HUMAN_G3V2	XR_108408	XR_108408	chr2	186085057	186085116	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4165_PI429285431	1.0784279	A	0.90738374	A	1.12587304788472	0	lncRNA	4122-1_{1..562}	"transcript_id ""ENST00000535911.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535911.1"" | genecode_v17"	chr12	 10511063	 10511624	-	ENSG00000256155.1	ENST00000535911.1	RP11-277P12.9	RP11-277P12.9-001	NA	NA	NA	inter
LNCA_21_P0006451	2.7219129	A	2.4433248	A	1.21300718836924	0	lncRNA	ENST00000433646	NA	NA	NA	NA	XLOC_008171	NA	ENST00000433646	NA	NA	"BROAD Institute lincRNA (XLOC_008171), lincRNA [TCONS_00017061]"	chrX:53123843-53123784	hs|Xp11.22	Agilent_HUMAN_G3V2	ENST00000433646	ENST00000433646	chrX	 53123784	 53123843	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41165_PI429285431	11.713807	P	11.475344	P	1.1797351405448	0	lncRNA	41986-1_{1..74}	ENST00000581696 ncrna:miRNA chromosome:GRCh37:2:178077454:178077527:1 gene:ENSG00000263721 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581696 ncrna:miRNA chromosome:GRCh37:2:178077454:178077527:1 gene:ENSG00000263721 gene_biotype:miRNA transcript_biotype:miRNA	chr2	178077454	178077527	+	ENSG00000263721	ENST00000581696	NA	NA	HNRNPA3	NA	chr2:178077422-178087527	inner
CUST_51103_PI429285431	4.547664	P	2.4876642	A	4.16986246529876	0	lncRNA	54742-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00006925 range=chr13:77558949-77564770 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006925 range=chr13:77558949-77564770 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 77558949	 77561948	+	NA	NA	NA	NA	CLN5	NA	chr13:77566059-77574770	inter
CUST_24320_PI429285431	0.9176017	A	0.9121898	A	1.00375828794541	0	lncRNA	25873-1_{1..275}	lnc-ITK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITK-1:1	chr5	156541784	156542058	+	lnc-ITK-1	lnc-ITK-1:1	ENSG00000254246.1	CTB-120L21.1	HAVCR2	NA	chr5:156531784-156536138	inter
CUST_7790_PI429285431	1.2117921	A	1.4699323	A	0.836165138077432	0	lncRNA	9414-1_{1..789}	lnc-TMEM75-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM75-3:3	chr8	128433074	128433862	-	lnc-TMEM75-3	lnc-TMEM75-3:3	ENSG00000246228	RP11-382A18.1	POU5F1B	NA	chr8:128427857-128429455	inter
LNCA_21_P0004918	4.7796364	P	5.3529654	P	0.672064218431156	0	lncRNA	TCONS_00011913	NA	NA	NA	NA	XLOC_005414	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005414), lincRNA [TCONS_00011913]"	chr6:107167350-107167409	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00011913	TCONS_00011913	chr6	107167350	107167409	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40101_PI429285431	6.5315475	P	6.6133285	P	0.944890463758434	0	lncRNA	40946-1_{1..689}	n407514|NR_026973|lncRNA|Homosapiens||RefGeneNoncode|NR_026973||-1.1218100|-0.3186491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407514|NR_026973|lncRNA|Homosapiens||RefGeneNoncode|NR_026973||-1.1218100|-0.3186491	chr6	   994884	   995572	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10475_PI429285431	1.1452268	A	0.9143487	A	1.17354901548893	0	lncRNA	12002-1_{1..224}	lnc-AC104024.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC104024.2.1-1:1	chr17	 16886356	 16886579	+	lnc-AC104024.2.1-1	lnc-AC104024.2.1-1:1	XLOC_012126	linc-MPRIP-2	NA	NA	NA	inter
CUST_28299_PI429285431	0.9105115	A	1.1691	A	0.83590535025927	0	lncRNA	29942-1_{1..2638}	n325602|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000072600|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000072600|0.0599287|-0.1446720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325602|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000072600|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000072600|0.0599287|-0.1446720	chr14	100606000	100608637	+	NA	NA	NA	NA	EVL	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50chr14:100596000-100610573"	NA	inner
CUST_4866_PI429285431	0.9857386	A	0.974743	A	1.00765068722479	0	lncRNA	4809-1_{1..1442}	"transcript_id ""ENST00000531609.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531609.1"" | genecode_v17"	chr14	 65679611	 65681052	-	ENSG00000255002.1	ENST00000531609.1	CTD-2509G16.2	CTD-2509G16.2-001	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90"	NA	inter
CUST_28015_PI429285431	1.4605833	A	1.3907982	A	1.04956033227469	0	lncRNA	29625-1_{1..386}	n325271|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328262|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328262|-1.0906500|-0.1846593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325271|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328262|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328262|-1.0906500|-0.1846593	chr2	 67002329	 67002714	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37792_PI429285431	2.1166654	A	2.3562894	A	0.846966022713757	0	lncRNA	38884-3_{6001..8441}	n346298|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1848|NULL|-1.3013300|-0.3612458	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346298|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1848|NULL|-1.3013300|-0.3612458	chr3	165184149	165186589	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19407_PI429285431	0.9145292	A	0.91364473	A	1.00061325585132	0	lncRNA	21069-1_{1..591}	lnc-URB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-URB2-1:1	chr1	229649725	229650315	+	lnc-URB2-1	lnc-URB2-1:1	ENSG00000223635.1	RP4-613A2.1	NUP133	NA	chr1:229639725-229644088	inter
CUST_14350_PI429285431	0.90423006	A	0.9105704	A	0.995614854158065	0	lncRNA	16008-1_{1..1038}	lnc-PCDH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH1-1:1	chr5	141204657	141205694	-	lnc-PCDH1-1	lnc-PCDH1-1:1	XLOC_005034	linc-ARAP3	NA	NA	NA	inter
CUST_36063_PI429285431	1.8461396	A	1.5128406	A	1.25989106658347	0	lncRNA	37374-1_{1..3000}	n344656|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_204|NULL|-1.5598300|-0.2418167	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344656|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_204|NULL|-1.5598300|-0.2418167	chr22	 27064942	 27067941	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009079	7.2857637	P	7.1809034	P	1.07539025251558	0	lncRNA	TCONS_00024754	NA	NA	NA	NA	XLOC_012038	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012038), lincRNA [TCONS_00024754]"	chr16:85723226-85723167	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024754	TCONS_00024754	chr16	 85723167	 85723226	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45682_PI429285431	0.90448225	A	1.0059241	A	0.932100970872828	0	lncRNA	50056-2_{3001..3284}	"gi|223972640|ref|NR_026939.1| Homo sapiens cancer susceptibility candidate 2 (non-protein coding) (CASC2), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223972640|ref|NR_026939.1| Homo sapiens cancer susceptibility candidate 2 (non-protein coding) (CASC2), transcript variant 1, non-coding RNA"	Chr10	119809332	119809615	+	255082	NR_026939.1	NA	NA	NA	NA	NA	inter
CUST_3086_PI429285431	0.92638	A	0.9381907	A	0.991846865166403	0	lncRNA	3065-1_{1..531}	"transcript_id ""ENST00000520487.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520487.1"" | genecode_v17"	chr8	 40018977	 40019507	+	ENSG00000254143.1	ENST00000520487.1	RP11-470M17.2	RP11-470M17.2-001	C8orf4	NA	chr8:40010989-40012821	inter
CUST_24872_PI429285431	1.2069739	A	1.7021896	A	0.709455598153549	0	lncRNA	26413-1_{1..959}	lnc-RP11-728F11.4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-728F11.4.1-1:1	chr11	117707883	117708841	+	lnc-RP11-728F11.4.1-1	lnc-RP11-728F11.4.1-1:1	ENSG00000254528.2	RP11-728F11.4	FXYD6-FXYD2	NA	chr11:117697883-117718507	inner
CUST_18065_PI429285431	0.9253891	A	0.91368794	A	1.00814360629399	0	lncRNA	19800-1_{1..281}	lnc-UBLCP1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBLCP1-4:1	chr5	158871658	158871938	+	lnc-UBLCP1-4	lnc-UBLCP1-4:1	XLOC_004620	linc-ADRA1B-2	NA	NA	NA	inter
CUST_38308_PI429285431	1.4873986	A	0.9914021	A	1.41029453908435	0	lncRNA	39359-1_{1..3000}	n381990|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001upb.1||1.1911400|-0.1458754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381990|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001upb.1||1.1911400|-0.1458754	chr13	 24481604	 24484603	-	NA	NA	NA	NA	NA	"hg19_refFlat_ANKRD26:range=chr10:27294519-273892555'pad=0,hg19_refFlat_ANKRD26:range=chr10:27294519-273892555'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-57.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30"	NA	inter
LNCA_21_P0003714	0.9341943	A	0.91919005	A	1.01045442315533	0	lncRNA	TCONS_00008413	NA	NA	NA	NA	XLOC_003864	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003864), lincRNA [TCONS_00008413]"	chr4:4712057-4711998	hs|4p16.2	Agilent_HUMAN_G3V2	TCONS_00008413	TCONS_00008413	chr4	  4711998	  4712057	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3772_PI429285431	6.960454	P	7.230142	P	0.829498915446702	0	lncRNA	3740-1_{1..1338}	"transcript_id ""ENST00000434189.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434189.2"" | genecode_v17"	chr10	102936080	102937417	+	ENSG00000237579.2	ENST00000434189.2	RP11-324L3.1	RP11-324L3.1-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60"	NA	inter
CUST_18780_PI429285431	6.195903	P	6.807787	P	0.654341646000188	0	lncRNA	20476-1_{1..338}	lnc-C7orf23-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C7orf23-1:1	chr7	 86781618	 86781955	-	lnc-C7orf23-1	lnc-C7orf23-1:1	ENSG00000224046	AC005076.5	DMTF1	NA	chr7:86781677-86791736	inner
CUST_27614_PI429285431	0.9237123	A	0.9158012	A	1.00549861887587	0	lncRNA	29191-1_{1..576}	n324816|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000139665|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000139665|-0.9685930|-0.2893489	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324816|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000139665|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000139665|-0.9685930|-0.2893489	chr21	 33253065	 33253640	+	NA	NA	NA	NA	HUNK	NA	chr21:33245628-33264744	inner
CUST_32092_PI429285431	3.2568104	P	3.7334595	P	0.718644859661151	0	lncRNA	33798-1_{1..732}	n338655|D55638|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1069|NULL|-0.9769930|-0.2996439	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338655|D55638|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1069|NULL|-0.9769930|-0.2996439	chr19	 42057937	 42058668	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27086_PI429285431	0.9087183	A	0.90710044	A	1.00112204411856	0	lncRNA	28618-1_{1..469}	n324196|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000138331|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000138331|-0.2232110|-0.3277191	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324196|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000138331|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000138331|-0.2232110|-0.3277191	chr7	115998249	115998717	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36592_PI429285431	8.791935	P	8.630736	P	1.11821608290523	0	lncRNA	37786-1_{1..935}	n345088|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_637|NULL|-1.2888700|-0.2923872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345088|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_637|NULL|-1.2888700|-0.2923872	chrX	 62517912	 62518846	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014777	2.6794014	A	1.6286811	A	2.07156386733223	0	lncRNA	XR_132554	XR_132554	XR_132554	NA	NA	LOC100652850	uncharacterized LOC100652850	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652850 (LOC100652850), miscRNA [XR_132554]"	chr8:52731401-52731460	hs|8q11.23	Agilent_HUMAN_G3V2	XR_132554	XR_132554	chr8	 52731401	 52731460	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19893_PI429285431	1.0638795	A	0.9285007	A	1.09838117145005	0	lncRNA	21548-1_{1..577}	lnc-C5orf43-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C5orf43-1:2	chr5	 60548536	 60549112	-	lnc-C5orf43-1	lnc-C5orf43-1:2	ENSG00000249279.1	CTC-436P18.3	NA	NA	NA	inter
CUST_28269_PI429285431	1.026827	A	1.2064046	A	0.882961476650989	0	lncRNA	29904-1_{1..434}	n325563|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000132555|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000132555|-0.8331850|-0.1988617	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325563|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000132555|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000132555|-0.8331850|-0.1988617	chr17	 19315023	 19315456	-	NA	NA	NA	NA	RNF112	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90chr17:19314491-19320589"	NA	inner
CUST_36566_PI429285431	0.9024239	A	0.89864105	A	1.00262551244882	0	lncRNA	37762-1_{1..1357}	n345064|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_613|NULL|-1.3043200|-0.2100302	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345064|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_613|NULL|-1.3043200|-0.2100302	chrX	 13981562	 13982918	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28864_PI429285431	0.921933	A	0.9095478	A	1.00862172124196	0	lncRNA	30577-1_{1..440}	n326284|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086407|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086407|-1.1817300|-0.3075196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326284|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086407|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086407|-1.1817300|-0.3075196	chr1	192586695	192587134	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29510_PI429285431	0.9212357	A	0.9231148	A	0.998698355008687	0	lncRNA	31268-1_{1..629}	n332944|AF088018|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067566|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067566|-1.2972000|-0.5922324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332944|AF088018|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067566|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067566|-1.2972000|-0.5922324	chr2	 66793323	 66793951	-	NA	NA	NA	NA	MEIS1	NA	chr2:66783323-66799891	inner
CUST_24406_PI429285431	0.906762	A	1.077226	A	0.88855685728995	0	lncRNA	25959-1_{1..549}	lnc-AC016251.1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC016251.1-1:8	chr15	 96870185	 96870733	-	lnc-AC016251.1-1	lnc-AC016251.1-1:8	ENSG00000247809.3	RP11-327J17.3	NR2F2	NA	chr15:96869157-96880250	inner
CUST_599_PI429285431	1.14536	A	1.6472175	A	0.706196952273352	0	lncRNA	591-1_{1..654}	"transcript_id ""ENST00000445339.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445339.1"" | genecode_v17"	chr1	230138477	230139130	+	ENSG00000228058.1	ENST00000445339.1	RP11-552D4.1	RP11-552D4.1-001	NA	NA	NA	inter
CUST_3833_PI429285431	0.926556	A	0.9073389	A	1.01340938881332	0	lncRNA	3800-1_{1..346}	"transcript_id ""ENST00000454492.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454492.1"" | genecode_v17"	chr10	130114546	130114891	-	ENSG00000234640.1	ENST00000454492.1	RP11-264E18.1	RP11-264E18.1-001	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
LNCA_21_P0005963	8.286819	P	6.561653	P	3.30618166803508	0	lncRNA	XR_110876	XR_110876	XR_110876	NA	Hs.149545	LOC100507420	uncharacterized LOC100507420	NA	THC2626710	NA	"PREDICTED: Homo sapiens hypothetical LOC100507420, transcript variant 1 (LOC100507420), miscRNA [XR_110876]"	chr8:37264454-37264395	hs|8p11.23	Agilent_HUMAN_G3V2	XR_110876	XR_110876	chr8	 37264395	 37264454	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36583_PI429285431	1.7401832	A	1.5336001	A	1.15395190831802	0	lncRNA	37777-1_{1..691}	n345079|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_628|NULL|-1.2818800|-0.3002512	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345079|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_628|NULL|-1.2818800|-0.3002512	chrX	 21920013	 21920703	+	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-12.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80"	NA	inter
CUST_31864_PI429285431	0.92330754	A	0.92447394	A	0.999191839866045	0	lncRNA	33596-1_{1..3000}	n338415|AK125947|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|812|NULL|1.1910500|-0.3113549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338415|AK125947|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|812|NULL|1.1910500|-0.3113549	chr14	 76745515	 76748514	+	NA	NA	NA	NA	NA	"hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_23241_PI429285431	0.91338027	A	0.9171814	A	0.997368725345358	0	lncRNA	24813-1_{1..569}	lnc-FOS-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOS-1:3	chr14	 75738341	 75738909	+	lnc-FOS-1	lnc-FOS-1:3	ENSG00000258820.1	RP11-293M10.2	FOS	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-62.60;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20chr14:75745481-75748653"	NA	inter
CUST_30218_PI429285431	5.669285	P	6.0326753	P	0.777335710649308	0	lncRNA	31993-1_{1..373}	n335068|AJ608790|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249224|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249224|0.2231390|-0.0948646	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335068|AJ608790|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249224|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249224|0.2231390|-0.0948646	chr6	 41658632	 41659004	-	NA	NA	NA	NA	TFEB	NA	chr6:41651716-41703997	inner
CUST_3500_PI429285431	1.0970708	A	0.9111882	A	1.13751265846867	0	lncRNA	3471-1_{1..928}	"transcript_id ""ENST00000603491.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603491.1"" | genecode_v17"	chr9	102117619	102118546	-	ENSG00000271086.1	ENST00000603491.1	RP11-13B9.5	RP11-13B9.5-007	NA	NA	NA	inter
CUST_36561_PI429285431	1.7649764	A	2.0012207	A	0.848952476180016	0	lncRNA	37757-1_{1..1131}	n345059|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_608|NULL|-1.2687600|-0.2357546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345059|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_608|NULL|-1.2687600|-0.2357546	chr9	114967941	114969071	-	NA	NA	NA	NA	ROD1	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr9:114980715-114985454"	NA	inter
CUST_39303_PI429285431	5.165797	P	5.1407666	P	1.01750113232924	0	lncRNA	40271-1_{1..1952}	n386312|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gsl.2||7.0585800|-0.1038462	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386312|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gsl.2||7.0585800|-0.1038462	chr22	 20387889	 20389840	-	NA	NA	NA	NA	TMEM191B	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-57.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-57.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60chr22:20377889-20380440"	NA	inter
LNCA_21_P0006410	0.9227954	A	0.9233662	A	0.999604429847848	0	lncRNA	ENST00000420865	NA	NA	NA	NA	XLOC_007911	NA	ENST00000420865	NA	NA	"BROAD Institute lincRNA (XLOC_007911), lincRNA [TCONS_00016958]"	chrY:905030-905089	hs|Yp11.32	Agilent_HUMAN_G3V2	ENST00000420865	ENST00000420865	chrY	   905030	   905089	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30724_PI429285431	0.9104623	A	0.911312	A	0.99941120624779	0	lncRNA	32507-1_{1..671}	n336272|Y10517|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325604|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325604|-1.2257300|-0.3788028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336272|Y10517|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325604|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325604|-1.2257300|-0.3788028	chr6	 25409166	 25409836	+	NA	NA	NA	NA	LRRC16A	NA	chr6:25399166-25419837	inner
LNCA_21_P0013320	10.092995	P	9.784275	P	1.23860828385961	0	lncRNA	TCONS_l2_00026648	NA	NA	NA	NA	XLOC_l2_013873	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013873), lincRNA [TCONS_l2_00026648]"	chr7:65849712-65849653	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00026648	TCONS_l2_00026648	chr7	 65849653	 65849712	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011083	0.92599267	A	0.9247606	A	1.00085437061358	0	lncRNA	TCONS_l2_00006110	NA	NA	NA	NA	XLOC_l2_003292	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003292), lincRNA [TCONS_l2_00006110]"	chr12:9524234-9524175	hs|12p13.31	Agilent_HUMAN_G3V2	TCONS_l2_00006110	TCONS_l2_00006110	chr12	  9524175	  9524234	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3006_PI429285431	1.9324903	A	1.435443	A	1.41132211406174	0	lncRNA	2985-1_{1..562}	"transcript_id ""ENST00000517732.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517732.1"" | genecode_v17"	chr8	 10334709	 10335270	+	ENSG00000253641.1	ENST00000517732.1	RP11-981G7.2	RP11-981G7.2-002	PRSS55	NA	chr8:10332392-10348976	inter
CUST_42800_PI429285431	10.932347	P	11.169256	P	0.848561424212119	0	lncRNA	45795-1_{1..149}	ENST00000383870 ncrna:snoRNA chromosome:GRCh37:11:62432894:62433042:1 gene:ENSG00000206597 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000383870 ncrna:snoRNA chromosome:GRCh37:11:62432894:62433042:1 gene:ENSG00000206597 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 62432894	 62433042	+	ENSG00000206597	ENST00000383870	NA	NA	C11orf83	NA	chr11:62439126-62441162	inter
CUST_22410_PI429285431	1.1268941	A	1.93537	A	0.570984742336107	0	lncRNA	23999-1_{1..774}	lnc-CEP170-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CEP170-1:2	chr1	243264688	243265461	-	lnc-CEP170-1	lnc-CEP170-1:2	ENSG00000214837.3	RP11-261C10.3	NA	NA	NA	inter
CUST_44666_PI429285431	0.9199074	A	1.2900681	A	0.773696310904782	0	lncRNA	49227-1_{1..1063}	"gi|397139126|ref|XR_158802.1| PREDICTED: Homo sapiens uncharacterized LOC100506091 (LOC100506091), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139126|ref|XR_158802.1| PREDICTED: Homo sapiens uncharacterized LOC100506091 (LOC100506091), misc_RNA"	NA	NA	NA	NA	NA	XR_158802.1	NA	NA	NA	NA	NA	Unknown
CUST_29297_PI429285431	1.3541291	A	1.4952966	A	0.906785043125724	0	lncRNA	31048-1_{1..344}	n332457|EU008569|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000484260|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000484260|0.3643970|-0.1284986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332457|EU008569|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000484260|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000484260|0.3643970|-0.1284986	chr21	 35821786	 35822129	-	NA	NA	NA	NA	KCNE1	NA	chr21:35818988-35841893	inner
CUST_20876_PI429285431	9.85212	P	9.752193	P	1.07171923244529	0	lncRNA	22508-1_{1..504}	lnc-SMUG1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMUG1-5:1	chr12	 54390454	 54390957	-	lnc-SMUG1-5	lnc-SMUG1-5:1	ENSG00000250133.1	HOXC-AS2	HOXC9	NA	chr12:54393877-54397121	inter
CUST_5256_PI429285431	6.6497545	P	6.978953	P	0.795978572778881	0	lncRNA	5196-1_{1..558}	"transcript_id ""ENST00000559979.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559979.1"" | genecode_v17"	chr15	 79529048	 79529605	-	ENSG00000259234.1	ENST00000559979.1	RP11-17L5.4	RP11-17L5.4-003	ANKRD34C	"hg19_refFlat_HNRNPC:range=chr14:21679382-217023525'pad=0,hg19_refFlat_HNRNPC:range=chr14:21679382-217023525'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_LOC440563:range=chr1:13182991-131838725'pad=0,hg19_refFlat_LOC440563:range=chr1:13182991-131838725'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_LOC649330:range=chr1:12907261-129081425'pad=0,hg19_refFlat_LOC649330:range=chr1:12907261-129081425'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_HNRNPCL1:range=chr1:12907261-129081425'pad=0,hg19_refFlat_HNRNPCL1:range=chr1:12907261-129081425'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50chr15:79575146-79586183"	NA	inter
CUST_26951_PI429285431	1.7359444	A	2.2841802	A	0.683855870605653	0	lncRNA	28472-1_{1..424}	n324032|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053056|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053056|-0.9146440|-0.1816781	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324032|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053056|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053056|-0.9146440|-0.1816781	chr9	 93943698	 93944121	+	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40"	NA	inter
LNCA_33_P3424566	2.5979517	A	2.7694285	A	0.887933291983944	0	lncRNA	XR_108650	XR_108650	XR_108650	   401261	Hs.656652	FLJ38717	FLJ38717 protein	NA	THC2479250	NA	"PREDICTED: Homo sapiens FLJ38717 protein (FLJ38717), miscRNA [XR_108650]"	chr6:42751842-42751901	hs|6p21.1	Agilent_HUMAN_G3V2	XR_108650	XR_108650	chr6	 42751842	 42751901	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21449_PI429285431	0.91821635	A	1.1367024	A	0.859466879470502	0	lncRNA	23068-1_{1..409}	lnc-TAT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TAT-1:1	chr16	 71575415	 71575823	-	lnc-TAT-1	lnc-TAT-1:1	ENSG00000260015.1	RP11-510M2.5	CHST4	NA	chr16:71565415-71572493	inter
CUST_20481_PI429285431	0.96483445	A	0.9013153	A	1.04501173992751	0	lncRNA	22124-1_{1..416}	lnc-RP11-408E5.4.1-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RP11-408E5.4.1-9:1	chr13	 19187373	 19187788	+	lnc-RP11-408E5.4.1-9	lnc-RP11-408E5.4.1-9:1	ENSG00000230473.1	RP11-484H12.1	NA	NA	NA	inter
CUST_13742_PI429285431	0.9077985	A	0.90281016	A	1.00346363838715	0	lncRNA	15385-1_{1..600}	lnc-PIGF-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIGF-3:1	chr2	 46727337	 46727936	-	lnc-PIGF-3	lnc-PIGF-3:1	XLOC_002085	linc-SRBD1-5	NA	NA	NA	inter
CUST_44668_PI429285431	2.426456	A	2.6182086	A	0.875541458709237	0	lncRNA	49229-1_{1..2397}	"gi|337298628|ref|NR_038979.1| Homo sapiens uncharacterized LOC100506207 (LOC100506207), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|337298628|ref|NR_038979.1| Homo sapiens uncharacterized LOC100506207 (LOC100506207), transcript variant 1, non-coding RNA"	Chr6	  8435856	  8438252	+	100506207	NR_038979.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_11530_PI429285431	6.036931	P	6.2127733	P	0.88525052541546	0	lncRNA	13102-1_{1..336}	lnc-PIK3R1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIK3R1-3:1	chr5	 67807329	 67807664	+	lnc-PIK3R1-3	lnc-PIK3R1-3:1	XLOC_004413	linc-SLC30A5-5	NA	NA	NA	inter
CUST_11070_PI429285431	0.894931	A	0.89497715	A	0.999968011769252	0	lncRNA	12621-1_{1..547}	lnc-PDCD6IP-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDCD6IP-2:7	chr3	 34476785	 34477331	+	lnc-PDCD6IP-2	lnc-PDCD6IP-2:7	XLOC_002612	linc-ARPP21-1	NA	NA	NA	inter
CUST_39667_PI429285431	0.91836315	A	0.9180526	A	1.00021528002634	0	lncRNA	40607-1_{1..1820}	n405296|NR_001434_5|lncRNA|Homosapiens||RefGeneNoncode|NR_001434_5||-1.0163700|-0.3372417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405296|NR_001434_5|lncRNA|Homosapiens||RefGeneNoncode|NR_001434_5||-1.0163700|-0.3372417	chr6	  1150398	  1152217	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6925_PI429285431	7.664098	P	7.5032644	P	1.11793290149426	0	lncRNA	6877-1_{1..446}	"transcript_id ""ENST00000458154.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458154.1"" | genecode_v17"	chr22	 20330726	 20331171	-	ENSG00000235578.1	ENST00000458154.1	XXbac-B33L19.4	XXbac-B33L19.4-001	NA	NA	NA	inter
CUST_35185_PI429285431	0.9220627	A	0.9204211	A	1.00113851803176	0	lncRNA	36586-2_{3001..4015}	n342163|AK126084|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4650|NULL|0.1665820|-0.2820557	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342163|AK126084|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4650|NULL|0.1665820|-0.2820557	chr6	163310015	163311029	+	NA	NA	NA	NA	PACRG	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00chr6:163297015-163321030"	NA	inner
CUST_18336_PI429285431	5.5592318	P	5.831168	P	0.828207286161705	0	lncRNA	20065-1_{1..381}	lnc-FBXO25-5:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXO25-5:6	chr8	  1212418	  1212798	+	lnc-FBXO25-5	lnc-FBXO25-5:6	ENSG00000254269	CTD-2281E23.2	NA	NA	NA	inter
CUST_5104_PI429285431	2.4785092	A	2.7268512	A	0.841863360908453	0	lncRNA	5044-1_{1..849}	"transcript_id ""ENST00000566797.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566797.1"" | genecode_v17"	chr15	 24686274	 24687122	+	ENSG00000260760.1	ENST00000566797.1	RP11-580I1.3	RP11-580I1.3-001	NA	NA	NA	inter
CUST_50571_PI429285431	0.92665815	A	1.2580848	A	0.794750183731357	0	lncRNA	54264-1_{1..331}	hg19_lincRNAsTranscripts_TCONS_l2_00030912 range=chrY:25537324-25538842 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030912 range=chrY:25537324-25538842 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrY	 25537324	 25537654	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11272_PI429285431	0.9886909	A	2.110333	A	0.459570436627134	0	lncRNA	12833-1_{1..578}	lnc-RTL1-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RTL1-8:1	chr14	101936872	101937449	-	lnc-RTL1-8	lnc-RTL1-8:1	XLOC_011136	linc-RTL1-4	NA	NA	NA	inter
CUST_38851_PI429285431	3.9311693	P	3.3308938	P	1.5160060384887	0	lncRNA	39843-1_{1..3000}	n384703|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kkd.2||-1.0099500|-0.3161333	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384703|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kkd.2||-1.0099500|-0.3161333	chr5	 92745064	 92748063	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21359_PI429285431	4.5876327	P	4.6497645	P	0.95784770832546	0	lncRNA	22983-1_{1..3000}	lnc-NPHS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NPHS2-1:1	chr1	179517817	179520816	-	lnc-NPHS2-1	lnc-NPHS2-1:1	ENSG00000261250.1	RP11-545A16.1	AXDND1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr1:179507817-179523870"	NA	inner
CUST_45414_PI429285431	1.8237673	A	0.89148617	A	1.90829092295984	0	lncRNA	49840-1_{1..3000}	"gi|212276166|ref|NR_024408.1| Homo sapiens uncharacterized LOC253039 (LOC253039), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|212276166|ref|NR_024408.1| Homo sapiens uncharacterized LOC253039 (LOC253039), non-coding RNA"	Chr9	123605320	123608319	+	253039	NR_024408.1	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.62;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60"	NA	inter
CUST_836_PI429285431	0.9145837	A	0.91701883	A	0.998313520214165	0	lncRNA	830-1_{1..696}	"transcript_id ""ENST00000587791.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587791.1"" | genecode_v17"	chr2	 35093461	 35094156	+	ENSG00000226994.2	ENST00000587791.1	AC012593.1	AC012593.1-006	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_41677_PI429285431	5.4878507	P	5.374831	P	1.08148953112175	0	lncRNA	43122-1_{1..93}	ENST00000362281 ncrna:miRNA chromosome:GRCh37:14:101340830:101340922:1 gene:ENSG00000199151 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362281 ncrna:miRNA chromosome:GRCh37:14:101340830:101340922:1 gene:ENSG00000199151 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101340830	101340922	+	ENSG00000199151	ENST00000362281	NA	NA	RTL1	NA	chr14:101346992-101350922	inter
CUST_5206_PI429285431	5.12792	P	5.1000443	P	1.01950984008691	0	lncRNA	5146-1_{1..658}	"transcript_id ""ENST00000560238.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560238.1"" | genecode_v17"	chr15	 63391069	 63391726	+	ENSG00000259672.1	ENST00000560238.1	RP11-69G7.1	RP11-69G7.1-001	NA	NA	NA	inter
CUST_4635_PI429285431	1.1456889	A	1.7036316	A	0.679270120536594	0	lncRNA	4581-1_{1..318}	"transcript_id ""ENST00000455977.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455977.1"" | genecode_v17"	chr13	 62798230	 62798547	+	ENSG00000230142.1	ENST00000455977.1	RP11-168G22.1	RP11-168G22.1-001	NA	NA	NA	inter
CUST_30891_PI429285431	4.2800217	P	4.2913475	P	0.99218028793775	0	lncRNA	32679-1_{1..298}	n336904|AY927516|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332678|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332678|0.7051180|-0.0545897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336904|AY927516|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332678|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332678|0.7051180|-0.0545897	chr19	 16238761	 16239058	+	NA	NA	NA	NA	HSH2D	NA	chr19:16244838-16253130	inner
CUST_24786_PI429285431	0.90105164	A	0.90457594	A	0.997560122742476	0	lncRNA	26329-1_{1..722}	lnc-FNBP1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FNBP1L-1:1	chr1	 94059930	 94060651	+	lnc-FNBP1L-1	lnc-FNBP1L-1:1	ENSG00000224093.1	RP5-1033H22.2	BCAR3	"hg19_refFlat_BCAR3:range=chr1:94027798-941404865'pad=0,hg19_refFlat_BCAR3:range=chr1:94027798-941404865'pad=0 3'pad=0 strand=- repeatMasking=none,-98.20;hg19_refFlat_BCAR3:range=chr1:94027798-940794875'pad=0,hg19_refFlat_BCAR3:range=chr1:94027798-940794875'pad=0 3'pad=0 strand=- repeatMasking=none,-98.20chr1:94049930-94070341"	NA	inner
LNCA_21_P0005556	3.7359126	P	4.10919	P	0.772026674281051	0	lncRNA	TCONS_00014106	NA	NA	NA	NA	XLOC_006053	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006053), lincRNA [TCONS_00014106]"	chr7:38053126-38055881	hs|7p14.1	Agilent_HUMAN_G3V2	TCONS_00014106	TCONS_00014106	chr7	 38053126	 38055881	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30176_PI429285431	0.91806775	A	1.40876	A	0.711683527941662	0	lncRNA	31950-1_{1..259}	n334872|AJ412044|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247591|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247591|-0.9516230|-0.2541255	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334872|AJ412044|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247591|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247591|-0.9516230|-0.2541255	chr13	 50795409	 50795667	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40880_PI429285431	14.841112	P	14.341043	P	1.41428120180248	0	lncRNA	41572-1_{1..768}	n410680|NR_037930|lncRNA|Homosapiens||RefGeneNoncode|NR_037930||1.5899600|-0.2668124	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410680|NR_037930|lncRNA|Homosapiens||RefGeneNoncode|NR_037930||1.5899600|-0.2668124	chr20	 57603732	 57604499	-	NA	NA	NA	NA	ATP5E	NA	chr20:57603733-57607422	inter
CUST_8515_PI429285431	1.4383179	A	1.560721	A	0.918656168075285	0	lncRNA	10077-1_{1..1916}	lnc-OXCT1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OXCT1-1:8	chr5	 42175255	 42177170	-	lnc-OXCT1-1	lnc-OXCT1-1:8	ENSG00000248519	XLOC_004800	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00"	NA	inter
CUST_49509_PI429285431	4.3580847	P	4.7218246	P	0.777147366174004	0	lncRNA	53300-1_{1..673}	hg19_lincRNAsTranscripts_TCONS_l2_00024669 range=chr6:26850914-26863510 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024669 range=chr6:26850914-26863510 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 26850914	 26851586	-	NA	NA	NA	NA	LOC100507141	NA	chr6:26864941-26865525	inter
CUST_26182_PI429285431	7.8546524	P	8.033218	P	0.883581060458926	0	lncRNA	27693-1_{1..423}	lnc-NLRP12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NLRP12-2:1	chr19	 54379063	 54379485	-	lnc-NLRP12-2	lnc-NLRP12-2:1	ENSG00000232220.1	AC008440.5	PRKCG	NA	chr19:54385467-54389303	inner
CUST_45986_PI429285431	2.395709	A	1.1142926	A	2.43077506863789	0	lncRNA	50276-1_{1..2023}	"gi|380422402|ref|NR_046447.1| Homo sapiens C-type lectin domain family 2, member D pseudogene (LOC374443), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|380422402|ref|NR_046447.1| Homo sapiens C-type lectin domain family 2, member D pseudogene (LOC374443), transcript variant 5, non-coding RNA"	Chr12	  9800643	  9802665	+	374443	NR_046447.1	NA	NA	NA	NA	NA	inter
CUST_29820_PI429285431	12.010348	P	11.924373	P	1.06140481604654	0	lncRNA	31583-1_{1..573}	n333539|BC052640|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000099545|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000099545|2.1047200|-0.1109238	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333539|BC052640|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000099545|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000099545|2.1047200|-0.1109238	chr19	  5678363	  5678935	-	NA	NA	NA	NA	SAFB	NA	chr19:5668363-5668489	inner
CUST_27646_PI429285431	1.290416	A	1.1101184	A	1.13311760136916	0	lncRNA	29224-1_{1..309}	n324852|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171133|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171133|-0.9332820|-0.3406168	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324852|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171133|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171133|-0.9332820|-0.3406168	chr21	 25232615	 25232923	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28048_PI429285431	1.7135936	A	2.801431	A	0.470466074992095	0	lncRNA	29664-1_{1..1808}	n325312|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323780|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323780|-1.1285800|-0.2955243	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325312|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323780|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323780|-1.1285800|-0.2955243	chr2	 48022338	 48024145	-	NA	NA	NA	NA	FBXO11	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.90;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MSH6:range=chr2:48010373-480339995'pad=0,hg19_refFlat_MSH6:range=chr2:48010373-480339995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30chr2:48034059-48132932"	NA	inner
CUST_18855_PI429285431	5.314645	P	5.6083436	P	0.815807909687838	0	lncRNA	20548-2_{3001..6000}	lnc-REXO1L2P-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-REXO1L2P-1:1	chr8	 86804313	 86807312	+	lnc-REXO1L2P-1	lnc-REXO1L2P-1:1	ENSG00000255694	AC232323.1	LOC100288562	"hg19_refFlat_REXO1L1:range=chr8:86787279-867893065'pad=0,hg19_refFlat_REXO1L1:range=chr8:86787279-867893065'pad=0 3'pad=0 strand=- repeatMasking=none,-105.00;hg19_refFlat_REXO1L1:range=chr8:86573699-865757265'pad=0,hg19_refFlat_REXO1L1:range=chr8:86573699-865757265'pad=0 3'pad=0 strand=- repeatMasking=none,-105.00chr8:86802465-86804650"	NA	inter
LNCA_21_P0004724	3.185277	P	3.2150545	P	0.979571360573464	0	lncRNA	TCONS_00011443	NA	NA	NA	NA	XLOC_005596	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005596), lincRNA [TCONS_00011443]"	chr6:6759204-6758519	hs|6p25.1	Agilent_HUMAN_G3V2	TCONS_00011443	TCONS_00011443	chr6	  6758519	  6759204	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37224_PI429285431	0.9225484	A	0.9224762	A	1.00005004647872	0	lncRNA	38336-1_{1..2233}	n345659|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1208|NULL|-1.2661600|-0.2257206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345659|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1208|NULL|-1.2661600|-0.2257206	chr4	185395955	185398187	+	NA	NA	NA	NA	IRF2	NA	chr4:185385955-185395726	inter
CUST_31686_PI429285431	10.566711	P	10.33566	P	1.1736896680719	0	lncRNA	33433-1_{1..1674}	n338213|BC050418|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|605|NULL|2.1093500|-0.2101473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338213|BC050418|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|605|NULL|2.1093500|-0.2101473	chr1	145456235	145457908	-	NA	NA	NA	NA	LIX1L	NA	chr1:145477085-145480388	inner
CUST_2272_PI429285431	1.3102916	A	1.3267863	A	0.988631856477619	0	lncRNA	2264-1_{1..264}	"transcript_id ""ENST00000502324.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502324.1"" | genecode_v17"	chr5	 97217124	 97217387	+	ENSG00000248202.1	ENST00000502324.1	RP11-455B3.1	RP11-455B3.1-002	NA	NA	NA	inter
CUST_10950_PI429285431	0.91059643	A	0.91459185	A	0.997234417181473	0	lncRNA	12491-1_{1..225}	lnc-AP000790.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP000790.1-2:1	chr11	 59662975	 59663199	+	lnc-AP000790.1-2	lnc-AP000790.1-2:1	XLOC_009139	linc-PLAC1L-2	NA	NA	NA	inter
LNCA_21_P0008059	1.7894641	A	1.9872772	A	0.871871182442276	0	lncRNA	TCONS_00021772	NA	NA	NA	NA	XLOC_010368	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010368), lincRNA [TCONS_00021772]"	chr13:44614325-44614384	hs|13q14.11	Agilent_HUMAN_G3V2	TCONS_00021772	TCONS_00021772	chr13	 44614325	 44614384	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_150_PI429285431	0.90218455	A	0.8990394	A	1.00218242989575	0	lncRNA	140-1_{1..449}	"transcript_id ""ENST00000443270.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443270.1"" | genecode_v17"	chr1	  5146519	  5146967	-	ENSG00000231510.1	ENST00000443270.1	RP11-542C10.1	RP11-542C10.1-001	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30"	NA	inter
LNCA_21_P0004253	1.7876656	A	1.1402037	A	1.56641002140637	0	lncRNA	ENST00000509844	NA	NA	NA	NA	XLOC_004397	NA	ENST00000509844	NA	NA	"BROAD Institute lincRNA (XLOC_004397), lincRNA [TCONS_00009406]"	chr5:56913103-56913162	hs|5q11.2	Agilent_HUMAN_G3V2	ENST00000509844	ENST00000509844	chr5	 56913103	 56913162	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36822_PI429285431	5.8097224	P	4.33213	P	2.78483605938811	0	lncRNA	37990-2_{3001..3276}	n345298|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_847|NULL|-1.2884000|-0.3556274	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345298|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_847|NULL|-1.2884000|-0.3556274	chr15	 21935676	 21935951	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6393_PI429285431	0.91546416	A	0.9104393	A	1.00348904012131	0	lncRNA	6325-1_{1..472}	"transcript_id ""ENST00000604312.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604312.1"" | genecode_v17"	chr19	 22638790	 22639261	+	ENSG00000270947.1	ENST00000604312.1	AC025811.3	AC025811.3-001	NA	NA	NA	inter
CUST_1632_PI429285431	11.7077	P	11.884893	P	0.884422111721424	0	lncRNA	1617-1_{1..745}	"transcript_id ""ENST00000601648.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601648.1"" | genecode_v17"	chr3	195408437	195409181	+	ENSG00000242086.3	ENST00000601648.1	AC069513.3	AC069513.3-032	NA	NA	NA	inter
CUST_11087_PI429285431	2.5562751	A	2.6383297	A	0.944711286932151	0	lncRNA	12641-1_{1..546}	lnc-JPH4-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JPH4-1:7	chr14	 24198787	 24199332	-	lnc-JPH4-1	lnc-JPH4-1:7	XLOC_010971	linc-JPH4-2	NA	NA	NA	inter
CUST_31789_PI429285431	0.92227226	A	0.90306	A	1.01340598900042	0	lncRNA	33528-1_{1..1711}	n338330|CR619492|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|724|NULL|2.2833100|-0.1608757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338330|CR619492|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|724|NULL|2.2833100|-0.1608757	chr1	161053626	161055336	+	NA	NA	NA	NA	PVRL4	NA	chr1:161043626-161059385	inner
CUST_27905_PI429285431	6.5366707	P	6.7942076	P	0.836514875135045	0	lncRNA	29500-1_{1..660}	n325143|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331082|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331082|-0.8710150|-0.1607799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325143|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331082|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331082|-0.8710150|-0.1607799	chr2	129537888	129538547	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33415_PI429285431	5.945188	P	6.231646	P	0.819912579273819	0	lncRNA	34995-1_{1..1439}	n340144|AK130806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2604|NULL|-0.9202920|-0.2687432	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340144|AK130806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2604|NULL|-0.9202920|-0.2687432	chr10	114590927	114592365	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009657	0.9160122	A	0.9030056	A	1.00905625003579	0	lncRNA	AK131520	NA	AK131520	NA	NA	XLOC_013348	NA	NA	THC2620912	NA	"BROAD Institute lincRNA (XLOC_013348), lincRNA [TCONS_00026815]"	chr19:44326316-44326257	hs|19q13.31	Agilent_HUMAN_G3V2	AK131520	AK131520	chr19	 44326257	 44326316	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11679_PI429285431	5.638375	P	5.79331	P	0.898172838760446	0	lncRNA	13257-1_{1..628}	lnc-AC145676.2.1-4:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC145676.2.1-4:9	chr7	   149329	   149956	-	lnc-AC145676.2.1-4	lnc-AC145676.2.1-4:9	XLOC_006326	linc-VIPR2-4	NA	NA	NA	inter
CUST_32138_PI429285431	4.9089313	P	4.7726183	P	1.09909264543097	0	lncRNA	33838-1_{1..1932}	n338705|BC030276|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1125|NULL|4.4997200|-0.1677068	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338705|BC030276|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1125|NULL|4.4997200|-0.1677068	chr13	 46786082	 46788013	+	NA	NA	NA	NA	LRRC63	NA	chr13:46786083-46851076	inter
LNCA_21_P0002685	0.97228605	A	0.90420943	A	1.04831814910104	0	lncRNA	TCONS_00005286	NA	NA	NA	NA	XLOC_002420	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002420), lincRNA [TCONS_00005286]"	chr2:183536876-183536817	hs|2q32.1	Agilent_HUMAN_G3V2	TCONS_00005286	TCONS_00005286	chr2	183536817	183536876	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42240_PI429285431	9.041823	P	9.45421	P	0.751379156071923	0	lncRNA	44375-1_{1..69}	ENST00000387392 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:5587:5655:-1 gene:ENSG00000210127 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000387392 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:5587:5655:-1 gene:ENSG00000210127 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	chrMT	     5587	     5655	-	ENSG00000210127	ENST00000387392	NA	NA	NA	NA	NA	Unknown
CUST_30574_PI429285431	0.91492784	A	0.9036015	A	1.007881719136	0	lncRNA	32356-1_{1..429}	n335788|X51526|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321663|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321663|-1.1264700|-0.3239094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335788|X51526|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321663|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321663|-1.1264700|-0.3239094	chr1	205032328	205032756	+	NA	NA	NA	NA	CNTN2	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00chr1:205022328-205042757"	NA	inner
CUST_9449_PI429285431	7.1827335	P	7.6767216	P	0.710059536139168	0	lncRNA	10954-1_{1..2183}	lnc-AC007663.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC007663.1-1:1	chr22	 20192175	 20194357	+	lnc-AC007663.1-1	lnc-AC007663.1-1:1	XLOC_014156	linc-ZNF74-3	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60"	NA	inter
CUST_17187_PI429285431	4.4683857	P	5.18441	P	0.608772755395546	0	lncRNA	18898-1_{1..497}	lnc-NUMB-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUMB-1:5	chr14	 73930181	 73930677	-	lnc-NUMB-1	lnc-NUMB-1:5	XLOC_011068	linc-NUMB	NUMB	NA	chr14:73920181-73925286	inter
CUST_5305_PI429285431	1.1093144	A	0.91039395	A	1.14783912042367	0	lncRNA	5245-1_{1..431}	"transcript_id ""ENST00000553410.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553410.1"" | genecode_v17"	chr15	 92076121	 92076551	+	ENSG00000258954.1	ENST00000553410.1	RP11-692C24.1	RP11-692C24.1-001	NA	NA	NA	inter
CUST_23964_PI429285431	1.2948737	A	1.5003766	A	0.867236329993222	0	lncRNA	25519-1_{1..1164}	lnc-TSPAN11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSPAN11-2:1	chr12	 30947977	 30949140	+	lnc-TSPAN11-2	lnc-TSPAN11-2:1	ENSG00000235884.2	RP11-77I22.3	NA	NA	NA	inter
LNCA_19_P00323040	0.91995966	A	0.9072634	A	1.00883921398238	0	lncRNA	ENST00000498616	NA	NA	NA	NA	XLOC_l2_009979	NA	ENST00000498616	THC2731031	NA	"BROAD Institute lincRNA (XLOC_l2_009979), lincRNA [TCONS_l2_00019959]"	chr3:165208995-165209054	hs|3q26.1	Agilent_HUMAN_G3V2	ENST00000498616	ENST00000498616	chr3	165208995	165209054	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25716_PI429285431	3.9827793	P	5.065032	P	0.472290787605205	0	lncRNA	27244-1_{1..580}	lnc-ZSCAN10-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZSCAN10-3:5	chr16	  3182324	  3182903	-	lnc-ZSCAN10-3	lnc-ZSCAN10-3:5	ENSG00000263072.1	RP11-473M20.14	ZNF213	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40chr16:3185057-3192350"	NA	inter
CUST_39822_PI429285431	1.7376627	A	1.3762627	A	1.28467194631104	0	lncRNA	40731-1_{1..2649}	n406322|NR_004401|lncRNA|Homosapiens||RefGeneNoncode|NR_004401||6.7228000|-0.1187002	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406322|NR_004401|lncRNA|Homosapiens||RefGeneNoncode|NR_004401||6.7228000|-0.1187002	chr19	 49141295	 49143943	+	NA	NA	NA	NA	NTN5	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60chr19:49164664-49176264"	NA	inter
CUST_8324_PI429285431	2.0528133	A	2.5837026	A	0.692127963930998	0	lncRNA	9907-2_{3001..3872}	lnc-DBN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DBN1-1:1	chr5	176881809	176882680	-	lnc-DBN1-1	lnc-DBN1-1:1	ENSG00000248342	AC145098.1	PRR7	NA	chr5:176873796-176883287	inner
CUST_17398_PI429285431	8.167701	P	8.241261	P	0.9502901627001	0	lncRNA	19120-1_{1..219}	lnc-GRPEL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRPEL1-1:1	chr4	  7104995	  7105213	-	lnc-GRPEL1-1	lnc-GRPEL1-1:1	XLOC_003872	linc-GRPEL1-1	NA	NA	NA	inter
CUST_44006_PI429285431	7.1248364	P	7.1278267	P	0.997929428582602	0	lncRNA	48697-2_{3001..3882}	"gi|383792161|ref|NR_047549.1| Homo sapiens solute carrier family 25 (aspartate/glutamate carrier), member 12 (SLC25A12), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|383792161|ref|NR_047549.1| Homo sapiens solute carrier family 25 (aspartate/glutamate carrier), member 12 (SLC25A12), transcript variant 2, non-coding RNA"	Chr2	172642915	172643796	-	8604	NR_047549.1	NA	NA	NA	NA	NA	inter
CUST_44146_PI429285431	4.273018	P	4.168494	P	1.07513960245911	0	lncRNA	48808-2_{3001..4201}	"gi|290543310|ref|NR_026746.2| Homo sapiens zinc finger protein 619 (ZNF619), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|290543310|ref|NR_026746.2| Homo sapiens zinc finger protein 619 (ZNF619), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NR_026746.2	NA	NA	NA	NA	NA	Unknown
CUST_36534_PI429285431	0.9139677	A	1.5198815	A	0.65705507097386	0	lncRNA	37732-3_{6001..6515}	n345034|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_583|NULL|-1.3243000|-0.3165207	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345034|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_583|NULL|-1.3243000|-0.3165207	chr9	 36428447	 36428961	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10"	NA	inter
CUST_46959_PI429285431	7.0476213	P	7.278746	P	0.851970451439934	0	lncRNA	51064-1_{1..2093}	"gi|302393578|ref|NR_036514.1| Homo sapiens chromosome 17 open reading frame 62 (C17orf62), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302393578|ref|NR_036514.1| Homo sapiens chromosome 17 open reading frame 62 (C17orf62), transcript variant 8, non-coding RNA"	Chr17	 80400462	 80402554	-	79415	NR_036514.1	NA	NA	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.11"	NA	inter
CUST_30937_PI429285431	6.105342	P	6.295987	P	0.876213896085356	0	lncRNA	32725-1_{1..229}	n337006|DQ067456|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341049|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341049|-1.0145000|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337006|DQ067456|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341049|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341049|-1.0145000|-1.0000000	chr7	128050272	128050500	-	NA	NA	NA	NA	IMPDH1	NA	chr7:128040272-128050036	inter
CUST_34470_PI429285431	1.7065469	A	0.91965866	A	1.72534902779808	0	lncRNA	35939-2_{3001..3747}	n341343|AK124873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3812|NULL|-1.1113500|-0.2815020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341343|AK124873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3812|NULL|-1.1113500|-0.2815020	chr7	141179430	141180176	+	NA	NA	NA	NA	LOC100507421	NA	chr7:141166430-141180180	inner
CUST_23159_PI429285431	0.9126147	A	0.9131157	A	0.999652793552654	0	lncRNA	24730-1_{1..529}	lnc-AC110373.1-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC110373.1-6:3	chr4	121314655	121315183	+	lnc-AC110373.1-6	lnc-AC110373.1-6:3	ENSG00000250938.1	RP11-679C8.2	NA	NA	NA	inter
CUST_22563_PI429285431	0.9332298	A	2.2899542	A	0.390467830781389	0	lncRNA	24150-1_{1..743}	lnc-SAA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAA2-1:1	chr11	 18270150	 18270892	-	lnc-SAA2-1	lnc-SAA2-1:1	ENSG00000255071.1	SAA2-SAA4	SAA2	NA	chr11:18260150-18270221	inner
LNCA_21_P0014878	5.939301	P	5.760357	P	1.13205495913845	0	lncRNA	XR_132788	XR_132788	XR_132788	NA	NA	LOC100653003	uncharacterized LOC100653003	NA	THC2534957	NA	"PREDICTED: Homo sapiens hypothetical LOC100653003, transcript variant 2 (LOC100653003), miscRNA [XR_132788]"	chr10:75538232-75538173	hs|10q22.2	Agilent_HUMAN_G3V2	XR_132788	XR_132788	chr10	 75538173	 75538232	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19364_PI429285431	4.5683784	P	5.052756	P	0.714805380984955	0	lncRNA	21027-1_{1..861}	lnc-LRPAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-LRPAP1-1:1	chr4	  3505324	  3506184	-	lnc-LRPAP1-1	lnc-LRPAP1-1:1	ENSG00000261643.1	RP11-529E10.6	LRPAP1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50chr4:3505324-3516184"	NA	inner
CUST_51932_PI429285431	0.91568476	A	0.9162931	A	0.999578419734122	0	lncRNA	55473-1_{1..1395}	hg19_lincRNAsTranscripts_TCONS_l2_00016460 range=chr20:5412642-5426901 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016460 range=chr20:5412642-5426901 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	  5412642	  5414036	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43761_PI429285431	0.9216961	A	0.9098663	A	1.00823350289161	0	lncRNA	48498-1_{1..893}	"gi|397138929|ref|XR_110855.2| PREDICTED: Homo sapiens CHRM3 antisense RNA 2 (CHRM3-AS2), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138929|ref|XR_110855.2| PREDICTED: Homo sapiens CHRM3 antisense RNA 2 (CHRM3-AS2), misc_RNA"	NA	NA	NA	NA	NA	XR_110855.2	NA	NA	NA	NA	NA	Unknown
CUST_26786_PI429285431	0.92570615	A	1.2638168	A	0.791076625863923	0	lncRNA	28293-4_{9001..12000}	n323846|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057239|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057239|3.8963400|-0.3476478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323846|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057239|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057239|3.8963400|-0.3476478	chrX	 72966215	 72969214	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_SEPHS1:range=chr10:13361142-133869505'pad=0,hg19_refFlat_SEPHS1:range=chr10:13361142-133869505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_CASP7:range=chr10:115451731-1154892995'pad=0,hg19_refFlat_CASP7:range=chr10:115451731-1154892995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30"	NA	inter
CUST_51764_PI429285431	2.3992045	A	2.3746095	A	1.017194100603	0	lncRNA	55315-1_{1..932}	hg19_lincRNAsTranscripts_TCONS_l2_00012224 range=chr19:303036-304321 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012224 range=chr19:303036-304321 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	   303036	   303967	+	NA	NA	NA	NA	MIER2	NA	chr19:305575-314321	inter
CUST_18004_PI429285431	5.5394926	P	4.987286	P	1.4663267263114	0	lncRNA	19738-1_{1..3000}	lnc-OSBP2-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OSBP2-2:12	chr22	 31371156	 31374155	+	lnc-OSBP2-2	lnc-OSBP2-2:12	XLOC_014209	linc-SMTN	MORC2	NA	chr22:31361156-31364187	inter
CUST_25034_PI429285431	5.004961	P	4.741919	P	1.2000063166665	0	lncRNA	26573-1_{1..337}	lnc-ACTB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-ACTB-1:1	chr7	  5719985	  5720321	-	lnc-ACTB-1	lnc-ACTB-1:1	ENSG00000237738.1	RNF216-IT1	RNF216	NA	chr7:5709985-5730092	inner
CUST_12792_PI429285431	0.9278614	A	0.9259636	A	1.00131632030933	0	lncRNA	14419-1_{1..381}	lnc-TRIB2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIB2-3:1	chr2	 13353419	 13353799	+	lnc-TRIB2-3	lnc-TRIB2-3:1	XLOC_001356	linc-FAM84A-5	NA	NA	NA	inter
CUST_50967_PI429285431	0.9083137	A	0.9049336	A	1.00234565353582	0	lncRNA	54608-1_{1..276}	hg19_lincRNAsTranscripts_TCONS_l2_00005788 range=chr12:80655786-80658968 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005788 range=chr12:80655786-80658968 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 80655786	 80656061	+	NA	NA	NA	NA	OTOGL	NA	chr12:80645786-80668968	inner
CUST_46809_PI429285431	0.91451496	A	0.9036049	A	1.00759094356305	0	lncRNA	50954-1_{1..997}	"gi|253314455|ref|NR_027997.1| Homo sapiens RAD52 motif 1 (RDM1), transcript variant 10, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|253314455|ref|NR_027997.1| Homo sapiens RAD52 motif 1 (RDM1), transcript variant 10, non-coding RNA"	Chr17	 34245084	 34246080	-	201299	NR_027997.1	NA	NA	NA	NA	NA	inter
CUST_30763_PI429285431	0.92376256	A	0.9058967	A	1.0124606656339	0	lncRNA	32548-1_{1..445}	n336597|Z29582|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326861|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326861|0.2138030|-0.4094631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336597|Z29582|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326861|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326861|0.2138030|-0.4094631	chr7	142448089	142448533	+	NA	NA	NA	NA	PRSS1	NA	chr7:142457319-142458740	inter
CUST_8528_PI429285431	0.9285228	A	0.9257235	A	1.00194221055489	0	lncRNA	10089-1_{1..551}	lnc-C4orf39-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C4orf39-1:2	chr4	165800072	165800622	+	lnc-C4orf39-1	lnc-C4orf39-1:2	ENSG00000248329	RP11-366M4.3	NA	NA	NA	inter
CUST_26695_PI429285431	0.9091557	A	0.9001572	A	1.00625677727117	0	lncRNA	28202-3_{6001..7291}	n1114|AF222983|DISC2RNA|Homosapiens|DISC2|NONCODEv2.0|n1114|NULL|-1.5906100|-0.3279822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n1114|AF222983|DISC2RNA|Homosapiens|DISC2|NONCODEv2.0|n1114|NULL|-1.5906100|-0.3279822	chr1	231954705	231955995	+	NA	NA	NA	NA	DISC1	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-18.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60chr1:231938705-231966006"	NA	inter
CUST_45068_PI429285431	4.3996477	P	3.5683162	P	1.77932679077486	0	lncRNA	49554-1_{1..3000}	"gi|300934784|ref|NR_034053.2| Homo sapiens transportin 3 (TNPO3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300934784|ref|NR_034053.2| Homo sapiens transportin 3 (TNPO3), transcript variant 3, non-coding RNA"	Chr7	128594234	128597233	-	23534	NR_034053.2	NA	NA	NA	NA	NA	inter
CUST_4831_PI429285431	0.91669345	A	0.92228884	A	0.996129082588419	0	lncRNA	4774-1_{1..602}	"transcript_id ""ENST00000418927.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418927.1"" | genecode_v17"	chr14	 54235660	 54236261	-	ENSG00000235269.1	ENST00000418927.1	AL162759.1	AL162759.1-001	NA	NA	NA	inter
CUST_47391_PI429285431	10.788658	P	10.623586	P	1.12122203300839	0	lncRNA	51439-1_{1..1033}	"gi|387849316|ref|NR_049728.1| Homo sapiens proteasome (prosome, macropain) assembly chaperone 1 (PSMG1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387849316|ref|NR_049728.1| Homo sapiens proteasome (prosome, macropain) assembly chaperone 1 (PSMG1), transcript variant 4, non-coding RNA"	Chr21	 40547372	 40548404	-	8624	NR_049728.1	NA	NA	NA	NA	NA	inter
CUST_51221_PI429285431	1.0453572	A	0.9128208	A	1.09621926955848	0	lncRNA	54839-1_{1..1901}	hg19_lincRNAsTranscripts_TCONS_l2_00008405 range=chr15:21184341-21209666 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008405 range=chr15:21184341-21209666 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 21184341	 21186241	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35299_PI429285431	2.7853732	A	2.689346	A	1.06882614224514	0	lncRNA	36703-1_{1..3000}	n342321|BC055421|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4813|NULL|0.0030393|-0.2218815	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342321|BC055421|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4813|NULL|0.0030393|-0.2218815	chr14	 52231993	 52234992	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50"	NA	inter
CUST_41891_PI429285431	0.8947646	A	0.8993101	A	0.996854257738929	0	lncRNA	43591-1_{1..81}	ENST00000579277 ncrna:miRNA chromosome:GRCh37:3:172389349:172389429:-1 gene:ENSG00000264711 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579277 ncrna:miRNA chromosome:GRCh37:3:172389349:172389429:-1 gene:ENSG00000264711 gene_biotype:miRNA transcript_biotype:miRNA	chr3	172389349	172389429	-	ENSG00000264711	ENST00000579277	NA	NA	NCEH1	NA	chr3:172379349-172399429	inner
CUST_48056_PI429285431	0.90374243	A	0.9081572	A	0.996944591910756	0	lncRNA	51933-1_{1..700}	"gi|310114081|ref|XR_112271.1| PREDICTED: Homo sapiens uncharacterized LOC100508751 (LOC100508751), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310114081|ref|XR_112271.1| PREDICTED: Homo sapiens uncharacterized LOC100508751 (LOC100508751), misc_RNA"	NA	NA	NA	NA	NA	XR_112271.1	NA	NA	NA	NA	NA	Unknown
CUST_44647_PI429285431	10.047829	P	10.591595	P	0.68597789844576	0	lncRNA	49211-1_{1..2721}	"gi|350276166|ref|NR_045218.1| Homo sapiens tripartite motif containing 41 (TRIM41), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|350276166|ref|NR_045218.1| Homo sapiens tripartite motif containing 41 (TRIM41), transcript variant 3, non-coding RNA"	Chr5	180650263	180652983	+	90933	NR_045218.1	NA	NA	NA	NA	NA	inter
CUST_52221_PI429285431	1.066602	A	1.044341	A	1.01554980880352	0	lncRNA	55734-1_{1..1338}	hg19_lincRNAsTranscripts_TCONS_00030036 range=chrUn_gl000214:30381-68053 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00030036 range=chrUn_gl000214:30381-68053 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrUn_gl000214	    30381	    31718	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8637_PI429285431	0.9123027	A	0.9219905	A	0.993307424453562	0	lncRNA	10189-1_{1..421}	lnc-NBN-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NBN-1:9	chr8	 90632912	 90633332	-	lnc-NBN-1	lnc-NBN-1:9	ENSG00000251136	RP11-37B2.1	NA	NA	NA	inter
LNCA_21_P0008597	0.9183142	A	0.92093635	A	0.9981841148386	0	lncRNA	THC2643777	NA	NA	NA	NA	XLOC_011181	NA	NA	THC2643777	NA	"BROAD Institute lincRNA (XLOC_011181), lincRNA [TCONS_00023317]"	NA	NA	Agilent_HUMAN_G3V2	THC2643777	THC2643777	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40375_PI429285431	0.9216199	A	0.90970093	A	1.00829582164738	0	lncRNA	41171-1_{1..2041}	n409156|NR_033296|lncRNA|Homosapiens||RefGeneNoncode|NR_033296||0.8129150|-0.2086618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409156|NR_033296|lncRNA|Homosapiens||RefGeneNoncode|NR_033296||0.8129150|-0.2086618	chr1	 45959597	 45961637	-	NA	NA	NA	NA	TESK2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40chr1:45949597-45956840"	NA	inter
CUST_37756_PI429285431	1.8669462	A	1.2507441	A	1.5328346723828	0	lncRNA	38852-1_{1..349}	n346263|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1813|NULL|-1.3025000|-0.1290552	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346263|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1813|NULL|-1.3025000|-0.1290552	chr6	167837701	167838049	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17069_PI429285431	7.4361534	P	7.871197	P	0.739671400516679	0	lncRNA	18778-1_{1..1596}	lnc-RP4-604K5.1.1-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-RP4-604K5.1.1-5:4	chr1	 87837252	 87838847	-	lnc-RP4-604K5.1.1-5	lnc-RP4-604K5.1.1-5:4	XLOC_000901	linc-SEP15-3	NA	NA	NA	inter
CUST_14676_PI429285431	3.4488137	P	4.726967	P	0.412322958761084	0	lncRNA	16344-1_{1..2536}	lnc-TCF12-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-TCF12-1:12	chr15	 57599740	 57602275	+	lnc-TCF12-1	lnc-TCF12-1:12	XLOC_011264	linc-CGNL1-2	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70"	NA	inter
CUST_51126_PI429285431	3.6608884	P	4.089489	P	0.742982121248652	0	lncRNA	54757-3_{6001..8919}	hg19_lincRNAsTranscripts_TCONS_l2_00007341 range=chr13:114053727-114065280 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007341 range=chr13:114053727-114065280 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	114059727	114062645	-	NA	NA	NA	NA	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-59.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-61.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70"	NA	inter
CUST_23436_PI429285431	1.2919977	A	1.3345639	A	0.970926371059332	0	lncRNA	25004-1_{1..1596}	lnc-NT5DC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NT5DC1-2:1	chr6	116691278	116692873	+	lnc-NT5DC1-2	lnc-NT5DC1-2:1	ENSG00000240050.1	RP1-93H18.1	DSE	NA	chr6:116681278-116701436	inner
CUST_2067_PI429285431	5.5759287	P	5.9781103	P	0.756713138823725	0	lncRNA	2058-1_{1..552}	"transcript_id ""ENST00000508881.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508881.1"" | genecode_v17"	chr5	  6795993	  6796544	+	ENSG00000249734.1	ENST00000508881.1	RP11-332J15.1	RP11-332J15.1-001	NA	NA	NA	inter
CUST_36037_PI429285431	5.5164914	P	5.5444684	P	0.98079464006982	0	lncRNA	37361-2_{3001..5089}	n344642|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_190|NULL|-1.6448000|-0.2786765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344642|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_190|NULL|-1.6448000|-0.2786765	chr1	101716305	101718393	-	NA	NA	NA	NA	S1PR1	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00chr1:101703305-101707076"	NA	inter
CUST_26777_PI429285431	0.9060498	A	0.90330434	A	1.00190481972695	0	lncRNA	28276-1_{1..3000}	n323829|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057506|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057506|0.3302730|-0.3177274	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323829|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057506|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057506|0.3302730|-0.3177274	chrX	100145476	100148475	-	NA	NA	NA	NA	XKRX	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70chrX:100135476-100159618"	NA	inter
CUST_13704_PI429285431	10.997642	P	10.36672	P	1.54855433010984	0	lncRNA	15342-3_{6001..7580}	lnc-BATF3-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-BATF3-2:3	chr1	212817656	212819235	-	lnc-BATF3-2	lnc-BATF3-2:3	XLOC_001195	linc-TMEM206-2	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60"	NA	inter
LNCA_21_P0003471	0.9285196	A	0.9247079	A	1.0026455624486	0	lncRNA	ENST00000502668	NA	NA	NA	NA	XLOC_003963	NA	ENST00000502668	NA	NA	"BROAD Institute lincRNA (XLOC_003963), lincRNA [TCONS_00007770]"	chr4:59913685-59912738	hs|4q13.1	Agilent_HUMAN_G3V2	ENST00000502668	ENST00000502668	chr4	 59912738	 59913685	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5636_PI429285431	3.3866293	P	3.0913444	P	1.22712728351778	0	lncRNA	5564-1_{1..623}	"transcript_id ""ENST00000567966.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567966.1"" | genecode_v17"	chr16	 79831947	 79832569	-	ENSG00000261082.1	ENST00000567966.1	RP11-345M22.3	RP11-345M22.3-001	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	inter
CUST_17790_PI429285431	1.7019451	A	2.636264	P	0.523289457874517	0	lncRNA	19521-2_{3001..5356}	lnc-CRIPAK-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRIPAK-1:2	chr4	  1551720	  1554075	+	lnc-CRIPAK-1	lnc-CRIPAK-1:2	XLOC_003422	linc-TACC3	NA	NA	NA	inter
CUST_52164_PI429285431	0.9613029	A	0.98082477	A	0.986559610441662	0	lncRNA	55685-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017638 range=chr22:23775735-23806986 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017638 range=chr22:23775735-23806986 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 23775735	 23778734	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45819_PI429285431	4.876911	P	4.210288	P	1.58735300615004	0	lncRNA	50153-1_{1..1751}	"gi|258613879|ref|NR_028473.1| Homo sapiens transmembrane protein 138 (TMEM138), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|258613879|ref|NR_028473.1| Homo sapiens transmembrane protein 138 (TMEM138), transcript variant 2, non-coding RNA"	Chr11	 61129473	 61131223	+	51524	NR_028473.1	NA	NA	NA	NA	NA	inter
CUST_7894_PI429285431	1.0544791	A	0.9252955	A	1.09367463165535	0	lncRNA	9511-1_{1..1101}	lnc-MRPL19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MRPL19-1:1	chr2	 75768864	 75769964	+	lnc-MRPL19-1	lnc-MRPL19-1:1	ENSG00000231172	AC007099.1	FAM176A	NA	chr2:75758864-75779832	inner
CUST_47278_PI429285431	3.6881104	P	3.4343853	P	1.19228166599165	0	lncRNA	51348-1_{1..3000}	"gi|300244549|ref|NR_034009.1| Homo sapiens serine/arginine-rich splicing factor 6 (SRSF6), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300244549|ref|NR_034009.1| Homo sapiens serine/arginine-rich splicing factor 6 (SRSF6), transcript variant 2, non-coding RNA"	Chr20	 42086504	 42089503	+	6431	NR_034009.1	NA	NA	NA	NA	NA	inter
CUST_8686_PI429285431	7.7330184	P	7.3420453	P	1.31127756435318	0	lncRNA	10234-1_{1..558}	lnc-ANKRD40-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD40-1:4	chr17	 48844824	 48845381	-	lnc-ANKRD40-1	lnc-ANKRD40-1:4	ENSG00000167117	C17orf73	NA	NA	NA	inter
CUST_29905_PI429285431	4.4480343	P	4.3705063	P	1.05520843339626	0	lncRNA	31668-1_{1..835}	n334019|M22405|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194837|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194837|-0.6055910|-0.1168437	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334019|M22405|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194837|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194837|-0.6055910|-0.1168437	chr11	  1093316	  1094150	-	NA	NA	NA	NA	MUC2	"hg19_refFlat_MUC2:range=chr11:1074902-11042635'pad=0,hg19_refFlat_MUC2:range=chr11:1074902-11042635'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.20chr11:1083316-1104417"	NA	inner
CUST_39440_PI429285431	5.7802153	P	4.7540216	P	2.0366438262868	0	lncRNA	40388-1_{1..3000}	n386770|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tzj.1||8.7166400|-0.3646514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386770|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tzj.1||8.7166400|-0.3646514	chr15	 21932513	 21935512	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10"	NA	inter
CUST_26505_PI429285431	1.136164	A	1.0140553	A	1.08832443849378	0	lncRNA	28013-1_{1..486}	lnc-CHURC1-FNTB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHURC1-FNTB-1:1	chr14	 65558564	 65559049	+	lnc-CHURC1-FNTB-1	lnc-CHURC1-FNTB-1:1	ENSG00000259118.1	RP11-840I19.3	MAX	NA	chr14:65548564-65568583	inner
CUST_7953_PI429285431	3.9171078	P	4.8086596	P	0.539034007434398	0	lncRNA	9565-1_{1..339}	lnc-EVX1-10:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EVX1-10:2	chr7	 27161538	 27161876	+	lnc-EVX1-10	lnc-EVX1-10:2	ENSG00000253552	AC004080.12	HOXA3	NA	chr7:27151538-27166639	inner
CUST_38376_PI429285431	2.575009	A	3.5149856	P	0.521241334700898	0	lncRNA	39416-1_{1..1443}	n382224|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yfk.2||-1.1868700|-0.1503531	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382224|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yfk.2||-1.1868700|-0.1503531	chr14	 96829893	 96831335	+	NA	NA	NA	NA	ATG2B	"hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90chr14:96819893-96829678"	NA	inner
CUST_22298_PI429285431	1.1272216	A	2.207736	A	0.472860192678244	0	lncRNA	23898-1_{1..1592}	lnc-ZSCAN10-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZSCAN10-3:1	chr16	  3184631	  3186222	-	lnc-ZSCAN10-3	lnc-ZSCAN10-3:1	ENSG00000263072.1	RP11-473M20.14	CASP14L	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60chr16:3194244-3194883"	NA	inter
CUST_27562_PI429285431	5.2197237	P	5.3178015	P	0.934276962910426	0	lncRNA	29141-1_{1..568}	n324752|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316630|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316630|-1.3379200|-0.4259720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324752|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316630|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316630|-1.3379200|-0.4259720	chr22	 17338095	 17338662	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39692_PI429285431	3.2949867	P	2.4254832	A	1.82703402292297	0	lncRNA	40632-1_{1..1738}	n405460|NR_002217|lncRNA|Homosapiens||RefGeneNoncode|NR_002217||6.8917000|-0.2863299	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405460|NR_002217|lncRNA|Homosapiens||RefGeneNoncode|NR_002217||6.8917000|-0.2863299	chr7	  6774935	  6776672	+	NA	NA	NA	NA	RSPH10B2	NA	chr7:6793740-6801232	inter
CUST_24753_PI429285431	4.6683693	P	5.042608	P	0.771512426972686	0	lncRNA	26297-1_{1..478}	lnc-MRPS5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPS5-2:1	chr2	 95692304	 95692781	-	lnc-MRPS5-2	lnc-MRPS5-2:1	ENSG00000233850.1	AC103563.8	MAL	NA	chr2:95691479-95702454	inner
CUST_28095_PI429285431	0.9171426	A	1.2772744	A	0.779093400930457	0	lncRNA	29717-1_{1..533}	n325367|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324350|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324350|-1.0620300|-0.1357467	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325367|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324350|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324350|-1.0620300|-0.1357467	chr2	 23433891	 23434423	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5130_PI429285431	2.46371	A	1.5260351	A	1.91543875872461	0	lncRNA	5070-1_{1..701}	"transcript_id ""ENST00000562992.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562992.1"" | genecode_v17"	chr15	 30832296	 30832996	+	ENSG00000260693.1	ENST00000562992.1	AC026150.8	AC026150.8-001	NA	NA	NA	inter
CUST_23023_PI429285431	5.572707	P	4.8109345	P	1.69557253168351	0	lncRNA	24595-1_{1..805}	lnc-TBC1D29-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBC1D29-1:4	chr17	 28961012	 28961816	+	lnc-TBC1D29-1	lnc-TBC1D29-1:4	ENSG00000214719.5	LRRC37BP1	NA	NA	NA	inter
CUST_33875_PI429285431	0.92154837	A	0.91982406	A	1.00119591515181	0	lncRNA	35419-1_{1..2352}	n340664|S69510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3126|NULL|10.8176000|-0.0938069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340664|S69510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3126|NULL|10.8176000|-0.0938069	chr17	 39722092	 39724443	-	NA	NA	NA	NA	KRT9	NA	chr17:39722093-39728310	inner
CUST_27558_PI429285431	5.3720684	P	5.0593367	P	1.24205727318886	0	lncRNA	29137-1_{1..416}	n324748|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319043|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319043|-1.0038400|-0.3517084	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324748|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319043|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319043|-1.0038400|-0.3517084	chr22	 18705556	 18705971	+	NA	NA	NA	NA	LOC642643	NA	chr22:18703328-18722103	inter
CUST_24988_PI429285431	6.095504	P	6.0191083	P	1.05438057738838	0	lncRNA	26528-1_{1..267}	lnc-OSBPL7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OSBPL7-1:1	chr17	 45759783	 45760049	-	lnc-OSBPL7-1	lnc-OSBPL7-1:1	ENSG00000264558.1	RP11-138C9.1	KPNB1	NA	chr17:45749783-45761004	inner
CUST_9189_PI429285431	3.022286	A	3.8499243	P	0.563450860059387	0	lncRNA	10702-1_{1..3000}	lnc-COL20A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-COL20A1-1:1	chr20	 62002213	 62005212	+	lnc-COL20A1-1	lnc-COL20A1-1:1	ENSG00000203900	RP11-261N11.8	CHRNA4	NA	chr20:61992213-61992695	inter
CUST_40254_PI429285431	4.826736	P	4.74574	P	1.0577480309141	0	lncRNA	41067-2_{3001..4370}	n408179|NR_028322_2|lncRNA|Homosapiens||RefGeneNoncode|NR_028322_2||4.3633100|-0.0932403	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408179|NR_028322_2|lncRNA|Homosapiens||RefGeneNoncode|NR_028322_2||4.3633100|-0.0932403	chr1	   326891	   328260	+	NA	NA	NA	NA	LOC100288646	NA	chr1:327463-338581	inter
CUST_50369_PI429285431	0.91797066	A	0.91999763	A	0.998595997993743	0	lncRNA	54083-1_{1..662}	hg19_lincRNAsTranscripts_TCONS_l2_00030545 range=chrX:79544369-79565796 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030545 range=chrX:79544369-79565796 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 79544369	 79545030	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27802_PI429285431	6.0482755	P	6.2124424	P	0.892443722020401	0	lncRNA	29388-1_{1..454}	n325030|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078322|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078322|-1.1875800|-0.1872095	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325030|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078322|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078322|-1.1875800|-0.1872095	chr20	 23285230	 23285683	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37501_PI429285431	10.481987	P	10.189537	P	1.22471834235861	0	lncRNA	38604-1_{1..231}	n345970|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1519|NULL|-1.3851500|-0.2633697	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345970|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1519|NULL|-1.3851500|-0.2633697	chr2	133036672	133036902	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11045_PI429285431	5.9097958	P	6.094749	P	0.879677611575028	0	lncRNA	12592-1_{1..865}	lnc-XRCC2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-XRCC2-4:1	chr7	153413334	153414198	-	lnc-XRCC2-4	lnc-XRCC2-4:1	XLOC_006659	linc-XRCC2-1	NA	NA	NA	inter
CUST_39885_PI429285431	8.808685	P	8.240412	P	1.48274756236344	0	lncRNA	40773-1_{1..1860}	n406556|NR_024058|lncRNA|Homosapiens||RefGeneNoncode|NR_024058||5.8867900|-0.3089281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406556|NR_024058|lncRNA|Homosapiens||RefGeneNoncode|NR_024058||5.8867900|-0.3089281	chr17	  1247833	  1249692	-	NA	NA	NA	NA	YWHAE	NA	chr17:1247834-1303556	inter
CUST_22039_PI429285431	0.8994244	A	1.373625	A	0.719865558358122	0	lncRNA	23648-1_{1..470}	lnc-AL359736.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL359736.1-1:1	chr13	 24895664	 24896133	-	lnc-AL359736.1-1	lnc-AL359736.1-1:1	ENSG00000240868.1	C1QTNF9-AS1	C1QTNF9	"hg19_refFlat_C1QTNF9:range=chr13:24890142-248959065'pad=0,hg19_refFlat_C1QTNF9:range=chr13:24890142-248959065'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.00;hg19_refFlat_C1QTNF9B:range=chr13:24465428-244711255'pad=0,hg19_refFlat_C1QTNF9B:range=chr13:24465428-244711255'pad=0 3'pad=0 strand=- repeatMasking=none,-97.00chr13:24885664-24896669"	NA	inner
CUST_50191_PI429285431	4.786092	P	5.6362834	P	0.554711138529231	0	lncRNA	53916-1_{1..522}	hg19_lincRNAsTranscripts_TCONS_l2_00028735 range=chr9:40293022-40307579 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028735 range=chr9:40293022-40307579 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 40293022	 40293543	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9307_PI429285431	0.91288227	A	0.89779353	A	1.01051360114634	0	lncRNA	10813-1_{1..377}	lnc-DROSHA-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DROSHA-7:1	chr5	 29395961	 29396337	-	lnc-DROSHA-7	lnc-DROSHA-7:1	XLOC_004765	linc-CDH9-6	NA	NA	NA	inter
CUST_32188_PI429285431	2.8198352	A	2.2087321	A	1.52742664927561	0	lncRNA	33886-1_{1..988}	n338760|AK057927|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1181|NULL|-1.1548300|-0.3921107	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338760|AK057927|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1181|NULL|-1.1548300|-0.3921107	chr2	 36750869	 36751856	+	NA	NA	NA	NA	CRIM1	NA	chr2:36740869-36761847	inner
CUST_9768_PI429285431	0.9119958	A	0.9183451	A	0.995608670812909	0	lncRNA	11285-1_{1..248}	lnc-SLITRK6-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK6-5:1	chr13	 85476481	 85476728	-	lnc-SLITRK6-5	lnc-SLITRK6-5:1	XLOC_010677	linc-SLITRK1-8	NA	NA	NA	inter
CUST_10952_PI429285431	9.854596	P	9.511822	P	1.26819271977354	0	lncRNA	12493-1_{1..1784}	lnc-TM2D3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TM2D3-1:1	chr15	102154153	102155936	-	lnc-TM2D3-1	lnc-TM2D3-1:1	XLOC_011616	linc-PCSK6-2	NA	NA	NA	inter
CUST_18509_PI429285431	0.8808049	A	0.8879201	A	0.995080260936322	0	lncRNA	20223-1_{1..587}	lnc-TFEC-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TFEC-1:3	chr7	115926672	115927258	-	lnc-TFEC-1	lnc-TFEC-1:3	ENSG00000237870	AC073130.1	NA	NA	NA	inter
CUST_49938_PI429285431	4.86186	P	5.8448257	P	0.50593862903522	0	lncRNA	53688-1_{1..255}	hg19_lincRNAsTranscripts_TCONS_l2_00026848 range=chr7:112596577-112620174 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026848 range=chr7:112596577-112620174 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	112596577	112596831	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39403_PI429285431	6.1993437	P	5.6393476	P	1.47426523194284	0	lncRNA	40363-1_{1..2116}	n386588|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010pbi.1||1.5572800|-0.2308957	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386588|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010pbi.1||1.5572800|-0.2308957	chr1	149397113	149399228	-	NA	NA	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30"	NA	inner
LNCA_21_P0014714	1.9642079	A	0.9007933	A	2.08987202439757	0	lncRNA	ENST00000498714	XR_112508	XR_112508	NA	Hs.655773	FOXP1-IT1	NA	ENST00000498714	THC2691091	NA	"PREDICTED: Homo sapiens FOXP1 intronic transcript 1 (non-protein coding) (FOXP1-IT1), miscRNA [XR_112508]"	chr3:71619541-71619482	hs|3p13	Agilent_HUMAN_G3V2	ENST00000498714	ENST00000498714	chr3	 71619482	 71619541	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24513_PI429285431	1.051177	A	0.9032575	A	1.10797052321522	0	lncRNA	26064-1_{1..2691}	lnc-CDH8-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CDH8-3:2	chr16	 63091122	 63093812	-	lnc-CDH8-3	lnc-CDH8-3:2	ENSG00000261502.2	RP11-96H17.2	NA	NA	NA	inter
CUST_19621_PI429285431	0.90004337	A	0.89409834	A	1.00412928287438	0	lncRNA	21277-1_{1..361}	lnc-UTS2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UTS2-2:1	chr1	  7501340	  7501700	-	lnc-UTS2-2	lnc-UTS2-2:1	ENSG00000225126.1	RP4-549F15.1	CAMTA1	NA	chr1:7491340-7511614	inner
CUST_49801_PI429285431	0.89124054	A	0.8905182	A	1.00050081329953	0	lncRNA	53557-2_{3001..4014}	hg19_lincRNAsTranscripts_TCONS_l2_00025921 range=chr7:63360341-63378351 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025921 range=chr7:63360341-63378351 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 63363341	 63364354	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90"	NA	inter
CUST_29590_PI429285431	4.588513	P	4.5850115	P	1.00243000253461	0	lncRNA	31350-1_{1..252}	n333098|AF308154|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076907|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076907|-1.0621300|-0.1251067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333098|AF308154|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076907|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076907|-1.0621300|-0.1251067	chr19	 45417577	 45417828	+	NA	NA	NA	NA	APOC1	NA	chr19:45417921-45422606	inner
CUST_38660_PI429285431	0.91156626	A	0.9113784	A	1.00013022310763	0	lncRNA	39661-1_{1..2720}	n383923|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xry.2||2.7020500|-0.2604579	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383923|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xry.2||2.7020500|-0.2604579	chr20	 45042868	 45045587	-	NA	NA	NA	NA	ELMO2	NA	chr20:45032868-45035271	inter
CUST_12976_PI429285431	2.7567673	A	2.3193934	A	1.35413718223983	0	lncRNA	14602-1_{1..2461}	lnc-AC016251.1-8:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC016251.1-8:13	chr15	 95850608	 95853068	-	lnc-AC016251.1-8	lnc-AC016251.1-8:13	XLOC_011592	linc-RGMA-7	NA	NA	NA	inter
CUST_13369_PI429285431	1.4566274	A	1.0619007	A	1.31469368482257	0	lncRNA	15005-1_{1..3000}	lnc-TRIM38-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIM38-1:2	chr6	 25998131	 26001130	+	lnc-TRIM38-1	lnc-TRIM38-1:2	XLOC_005208	linc-HIST1H3A	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_28246_PI429285431	0.9124992	A	0.9084203	A	1.00283127855463	0	lncRNA	29882-1_{1..381}	n325538|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255305|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255305|-1.1464600|-0.3031683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325538|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255305|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255305|-1.1464600|-0.3031683	chr17	 67529586	 67529966	-	NA	NA	NA	NA	MAP2K6	NA	chr17:67519586-67538470	inner
CUST_31046_PI429285431	6.573886	P	7.1009536	P	0.693963841856131	0	lncRNA	32836-1_{1..613}	n337267|BC127872|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389491|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389491|5.9221500|-0.1558037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337267|BC127872|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389491|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389491|5.9221500|-0.1558037	chr6	  3225543	  3226155	-	NA	NA	NA	NA	TUBB2B	NA	chr6:3224495-3227968	inner
CUST_35955_PI429285431	4.091826	P	4.385608	P	0.815760750439917	0	lncRNA	37310-2_{3001..6000}	n344585|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_133|NULL|-1.7306400|-0.3500855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344585|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_133|NULL|-1.7306400|-0.3500855	chr12	 92370961	 92373960	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70"	NA	inner
LNCA_21_P0014242	0.91818297	A	0.9053559	A	1.00893069016879	0	lncRNA	XR_108995	XR_108995	XR_108995	NA	Hs.547168	LOC100505588	uncharacterized LOC100505588	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505588 (LOC100505588), miscRNA [XR_108995]"	chr9:126768667-126768608	hs|9q33.3	Agilent_HUMAN_G3V2	XR_108995	XR_108995	chr9	126768608	126768667	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32626_PI429285431	0.90681	A	0.89963496	A	1.00498574642262	0	lncRNA	34285-1_{1..1577}	n339250|AK027107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1682|NULL|-1.0718700|-0.2886534	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339250|AK027107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1682|NULL|-1.0718700|-0.2886534	chr3	 12450372	 12451948	+	NA	NA	NA	NA	PPARG	NA	chr3:12440372-12461924	inner
CUST_51505_PI429285431	0.9013634	A	0.9062476	A	0.99662025478087	0	lncRNA	55081-1_{1..1395}	hg19_lincRNAsTranscripts_TCONS_l2_00010290 range=chr16:76262321-76269536 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010290 range=chr16:76262321-76269536 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 76262321	 76263715	-	NA	NA	NA	NA	CNTNAP4	NA	chr16:76268915-76279536	inter
CUST_15589_PI429285431	4.9114895	P	4.4661584	P	1.36162657534683	0	lncRNA	17276-1_{1..432}	lnc-UBE3C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-UBE3C-1:1	chr7	156850901	156851332	+	lnc-UBE3C-1	lnc-UBE3C-1:1	XLOC_006314	linc-UBE3C-1	NA	NA	NA	inter
CUST_15410_PI429285431	0.9136754	A	1.3135022	A	0.757949271946781	0	lncRNA	17096-1_{1..619}	lnc-SLC25A48-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A48-2:1	chr5	135160092	135160710	+	lnc-SLC25A48-2	lnc-SLC25A48-2:1	XLOC_004565	linc-SLC25A48-1	NA	NA	NA	inter
CUST_34099_PI429285431	8.029193	P	8.196657	P	0.890406481757627	0	lncRNA	35623-2_{3001..5166}	n340920|AB040880|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3385|NULL|22.3442000|-0.0715219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340920|AB040880|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3385|NULL|22.3442000|-0.0715219	chr17	 79413849	 79416014	+	NA	NA	NA	NA	BAHCC1	NA	chr17:79400849-79433358	inner
LNCA_19_P00809697	4.351518	P	5.5438957	P	0.437581090380876	0	lncRNA	ENST00000417705	NA	BC025320	NA	NA	XLOC_000670	NA	ENST00000417705	NA	NA	"BROAD Institute lincRNA (XLOC_000670), lincRNA [TCONS_00002277]"	chr1:852887-852828	hs|1p36.33	Agilent_HUMAN_G3V2	ENST00000417705	ENST00000417705	chr1	   852828	   852887	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24044_PI429285431	0.90322775	A	0.8979534	A	1.00366259178857	0	lncRNA	25596-1_{1..214}	lnc-ADAM23-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAM23-2:2	chr2	207513385	207513598	+	lnc-ADAM23-2	lnc-ADAM23-2:2	ENSG00000235118.3	AC010731.4	DYTN	NA	chr2:207516345-207523571	inner
CUST_20176_PI429285431	0.89950776	A	1.6811906	A	0.581687884145456	0	lncRNA	21820-1_{1..323}	lnc-STK24-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STK24-1:1	chr13	 99088026	 99088348	-	lnc-STK24-1	lnc-STK24-1:1	ENSG00000231194.1	FARP1-AS1	FARP1	"hg19_refFlat_FARP1:range=chr13:98865497-991005715'pad=0,hg19_refFlat_FARP1:range=chr13:98865497-991005715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80chr13:99078026-99098094"	NA	inner
CUST_17439_PI429285431	2.019771	A	2.586473	A	0.675158437441027	0	lncRNA	19163-1_{1..972}	lnc-C15orf2-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-2:9	chr15	 24778842	 24779813	+	lnc-C15orf2-2	lnc-C15orf2-2:9	XLOC_011181	linc-C15orf2-1	NA	NA	NA	inter
CUST_4555_PI429285431	2.5829113	A	2.1941767	A	1.30924455064921	0	lncRNA	4504-1_{1..678}	"transcript_id ""ENST00000453309.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453309.2"" | genecode_v17"	chr13	 21861545	 21862222	+	ENSG00000229137.2	ENST00000453309.2	RP11-101P17.11	RP11-101P17.11-001	NA	NA	NA	inter
CUST_44805_PI429285431	1.1667552	A	1.5705032	A	0.755891986616024	0	lncRNA	49339-1_{1..3000}	"gi|223718020|ref|NR_026876.1| Homo sapiens six-twelve leukemia (STL), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223718020|ref|NR_026876.1| Homo sapiens six-twelve leukemia (STL), non-coding RNA"	Chr6	125229389	125232388	-	7955	NR_026876.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10"	NA	inter
CUST_562_PI429285431	0.90849286	A	0.920845	A	0.991474697250206	0	lncRNA	554-1_{1..362}	"transcript_id ""ENST00000431307.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431307.1"" | genecode_v17"	chr1	212398622	212398983	-	ENSG00000226251.1	ENST00000431307.1	RP11-15I11.3	RP11-15I11.3-003	NA	NA	NA	inter
CUST_8992_PI429285431	1.1749784	A	0.9154305	A	1.19710350730471	0	lncRNA	10523-1_{1..825}	lnc-C20orf197-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C20orf197-3:10	chr20	 58905931	 58906755	+	lnc-C20orf197-3	lnc-C20orf197-3:10	ENSG00000228340	RP5-1043L13.1	NA	NA	NA	inter
CUST_42505_PI429285431	1.1179273	A	0.9086794	A	1.15608534100385	0	lncRNA	45283-1_{1..72}	ENST00000516547 ncrna:snoRNA chromosome:GRCh37:19:42648206:42648277:-1 gene:ENSG00000252356 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516547 ncrna:snoRNA chromosome:GRCh37:19:42648206:42648277:-1 gene:ENSG00000252356 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	 42648206	 42648277	-	ENSG00000252356	ENST00000516547	NA	NA	NA	NA	NA	inter
CUST_24565_PI429285431	4.3256836	P	4.7338343	P	0.753588732838368	0	lncRNA	26113-1_{1..774}	lnc-FOXA1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXA1-2:1	chr14	 38371221	 38371994	-	lnc-FOXA1-2	lnc-FOXA1-2:1	ENSG00000259091.1	LINC00517	NA	NA	NA	inter
LNCA_21_P0002314	3.7505593	P	3.7142446	P	1.02549090732928	0	lncRNA	TCONS_00003935	NA	NA	NA	NA	XLOC_001748	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001748), lincRNA [TCONS_00003935]"	chr2:171638844-171638903	hs|2q31.1	Agilent_HUMAN_G3V2	TCONS_00003935	TCONS_00003935	chr2	171638844	171638903	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51852_PI429285431	4.555587	P	5.6316557	P	0.474319570308593	0	lncRNA	55407-1_{1..271}	hg19_lincRNAsTranscripts_TCONS_l2_00012575 range=chr19:45429826-45434370 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012575 range=chr19:45429826-45434370 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 45429826	 45430096	+	NA	NA	NA	NA	APOC1	NA	chr19:45419826-45422606	inter
LNCA_21_P0004746	1.6825472	A	0.9188982	A	1.69777938198374	0	lncRNA	ENST00000448738	NA	NA	NA	NA	XLOC_005706	NA	ENST00000448738	NA	NA	"BROAD Institute lincRNA (XLOC_005706), lincRNA [TCONS_00011483]"	chr6:38131494-38131435	hs|6p21.2	Agilent_HUMAN_G3V2	ENST00000448738	ENST00000448738	chr6	 38131435	 38131494	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41730_PI429285431	2.807489	A	2.372797	A	1.35162224529428	0	lncRNA	43258-1_{1..63}	ENST00000584253 ncrna:miRNA chromosome:GRCh37:6:27115405:27115467:1 gene:ENSG00000265565 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584253 ncrna:miRNA chromosome:GRCh37:6:27115405:27115467:1 gene:ENSG00000265565 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 27115405	 27115467	+	ENSG00000265565	ENST00000584253	NA	NA	HIST1H4I	NA	chr6:27107088-27107457	inter
CUST_25282_PI429285431	2.9252434	A	2.946982	A	0.985044905706651	0	lncRNA	26812-1_{1..358}	lnc-TGFB3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TGFB3-1:2	chr14	 76303497	 76303854	-	lnc-TGFB3-1	lnc-TGFB3-1:2	ENSG00000259103.1	RP11-270M14.4	TTLL5	NA	chr14:76293497-76313554	inner
CUST_44573_PI429285431	4.3894825	P	5.8839984	P	0.354899906640968	0	lncRNA	49155-1_{1..739}	"gi|338221682|ref|NR_039993.1| Homo sapiens TMEM161B antisense RNA 1 (TMEM161B-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338221682|ref|NR_039993.1| Homo sapiens TMEM161B antisense RNA 1 (TMEM161B-AS1), transcript variant 1, non-coding RNA"	Chr5	 87564699	 87565437	+	100505894	NR_039993.1	NA	NA	NA	NA	NA	inter
LNCA_19_P00808126	1.9832193	A	0.9207748	A	2.08846722066773	0	lncRNA	DQ272581	NA	DQ272581	NA	NA	XLOC_l2_013001	NA	NA	THC2506072	NA	"BROAD Institute lincRNA (XLOC_l2_013001), lincRNA [TCONS_l2_00025392]"	chr6:44059949-44059890	hs|6p21.1	Agilent_HUMAN_G3V2	DQ272581	DQ272581	chr6	 44059890	 44059949	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39677_PI429285431	2.5413816	A	3.2919781	P	0.594357762167981	0	lncRNA	40618-1_{1..3000}	n405307|NR_001443|lncRNA|Homosapiens||RefGeneNoncode|NR_001443||1.3863700|-0.1426455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405307|NR_001443|lncRNA|Homosapiens||RefGeneNoncode|NR_001443||1.3863700|-0.1426455	chr17	 18325494	 18328493	+	NA	NA	NA	NA	LGALS9C	NA	chr17:18330120-18338647	inter
CUST_12146_PI429285431	4.4424744	P	4.271443	P	1.12586309007925	0	lncRNA	13745-1_{1..601}	lnc-HDGFL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HDGFL1-1:1	chr6	 22664163	 22664763	+	lnc-HDGFL1-1	lnc-HDGFL1-1:1	XLOC_005199	linc-NRSN1-5	NA	NA	NA	inter
CUST_15260_PI429285431	0.9076813	A	0.9018585	A	1.00404421325144	0	lncRNA	16932-1_{1..708}	lnc-RP11-327F22.5.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-327F22.5.1-5:1	chr16	 51351337	 51352044	+	lnc-RP11-327F22.5.1-5	lnc-RP11-327F22.5.1-5:1	XLOC_011720	linc-CHD9-8	NA	NA	NA	inter
CUST_27450_PI429285431	0.921118	A	0.92586476	A	0.996715203476683	0	lncRNA	29020-1_{1..1809}	n324626|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000314057|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000314057|-1.1025400|-0.4023160	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324626|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000314057|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000314057|-1.1025400|-0.4023160	chr5	 95213694	 95215502	+	NA	NA	NA	NA	ELL2	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10chr5:95220802-95231590"	NA	inner
CUST_46372_PI429285431	6.0885506	P	5.1081233	P	1.97304970384724	0	lncRNA	50590-3_{6001..6982}	"gi|258613852|ref|NR_028457.1| Homo sapiens ataxin 3 (ATXN3), transcript variant k, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|258613852|ref|NR_028457.1| Homo sapiens ataxin 3 (ATXN3), transcript variant k, non-coding RNA"	Chr14	 92530896	 92531877	-	4287	NR_028457.1	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_20853_PI429285431	1.1303451	A	0.9024912	A	1.171091580171	0	lncRNA	22484-1_{1..446}	lnc-A1CF-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-A1CF-3:1	chr10	 53005481	 53005926	-	lnc-A1CF-3	lnc-A1CF-3:1	ENSG00000231132.1	RP11-40C11.2	PRKG1	NA	chr10:52995481-53015566	inner
LNCA_21_P0008382	0.97769403	A	0.9243211	A	1.03768813948742	0	lncRNA	ENST00000556669	NA	NA	NA	NA	XLOC_010921	NA	ENST00000556669	NA	NA	"BROAD Institute lincRNA (XLOC_010921), lincRNA [TCONS_00022619]"	chr14:97256810-97256869	hs|14q32.2	Agilent_HUMAN_G3V2	ENST00000556669	ENST00000556669	chr14	 97256810	 97256869	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7332_PI429285431	0.9152155	A	1.4435399	A	0.693359560323245	0	lncRNA	8802-1_{1..290}	"transcript_id ""ENST00000493457.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000493457.2"" | genecode_v17"	chr20	 14203687	 14203976	+	ENSG00000239923.2	ENST00000493457.2	RN7SL864P	RN7SL864P-201	MACROD2	NA	chr20:14193687-14213976	inner
CUST_18262_PI429285431	0.9082703	A	0.90818423	A	1.00005966095748	0	lncRNA	19996-1_{1..767}	lnc-ARHGEF35-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARHGEF35-1:13	chr7	144052075	144052841	-	lnc-ARHGEF35-1	lnc-ARHGEF35-1:13	ENSG00000244479	RP4-798C17.6	ARHGEF5	NA	chr7:144052489-144062231	inter
CUST_51094_PI429285431	5.5695286	P	5.531602	P	1.0266373121616	0	lncRNA	54732-1_{1..2072}	hg19_lincRNAsTranscripts_TCONS_l2_00006887 range=chr13:64312310-64316936 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006887 range=chr13:64312310-64316936 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 64312310	 64314381	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44885_PI429285431	6.668026	P	6.703514	P	0.975701668179642	0	lncRNA	49408-1_{1..1163}	"gi|289063411|ref|NR_033329.1| Homo sapiens kelch-like 7 (Drosophila) (KLHL7), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|289063411|ref|NR_033329.1| Homo sapiens kelch-like 7 (Drosophila) (KLHL7), transcript variant 5, non-coding RNA"	Chr7	 23145353	 23146515	+	55975	NR_033329.1	NA	NA	NA	NA	NA	inter
CUST_14674_PI429285431	0.9203785	A	0.9093052	A	1.00770495826932	0	lncRNA	16343-1_{1..3000}	lnc-BANP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BANP-1:2	chr16	 88219528	 88222527	+	lnc-BANP-1	lnc-BANP-1:2	XLOC_011826	linc-ZNF469-3	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.54;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20"	NA	inter
CUST_32332_PI429285431	2.210478	A	1.1158317	A	2.13560717330341	0	lncRNA	34014-1_{1..2378}	n338911|AK096093|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1337|NULL|1.4633400|-0.1868225	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338911|AK096093|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1337|NULL|1.4633400|-0.1868225	chr2	 95711631	 95714008	-	NA	NA	NA	NA	MAL	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MAL:range=chr2:95691538-957192005'pad=0,hg19_refFlat_MAL:range=chr2:95691538-957192005'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40chr2:95701631-95719735"	NA	inner
LNCA_21_P0009010	4.061193	P	3.922316	P	1.10104772195695	0	lncRNA	TCONS_00024585	NA	NA	NA	NA	XLOC_011880	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011880), lincRNA [TCONS_00024585]"	chr16:14096436-14096377	hs|16p13.12	Agilent_HUMAN_G3V2	TCONS_00024585	TCONS_00024585	chr16	 14096377	 14096436	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28786_PI429285431	5.1607995	P	5.3803906	P	0.858808812309199	0	lncRNA	30494-1_{1..654}	n326193|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092103|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092103|-1.1346700|-0.1408950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326193|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092103|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092103|-1.1346700|-0.1408950	chr1	228205099	228205752	+	NA	NA	NA	NA	WNT3A	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30chr1:228195099-228219532"	NA	inner
CUST_25450_PI429285431	2.6951735	A	2.044682	A	1.56970287397293	0	lncRNA	26980-1_{1..523}	lnc-ANGPT2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANGPT2-1:2	chr8	  6565662	  6566184	-	lnc-ANGPT2-1	lnc-ANGPT2-1:2	ENSG00000249898.3	CTD-2541M15.1	AGPAT5	"hg19_refFlat_MCPH1:range=chr8:6264189-65005705'pad=0,hg19_refFlat_MCPH1:range=chr8:6264189-65005705'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.10chr8:6565878-6575721"	NA	inter
CUST_2539_PI429285431	3.4061682	P	4.0849166	P	0.62470699962345	0	lncRNA	2527-1_{1..197}	"transcript_id ""ENST00000446733.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446733.1"" | genecode_v17"	chr6	 47697563	 47697759	-	ENSG00000226594.1	ENST00000446733.1	RP11-550C4.6	RP11-550C4.6-001	GPR115	NA	chr6:47687563-47689757	inter
CUST_6467_PI429285431	0.9124181	A	0.92480636	A	0.991449874528321	0	lncRNA	6409-1_{1..2757}	"transcript_id ""ENST00000561778.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561778.2"" | genecode_v17"	chr19	 35302493	 35305249	-	ENSG00000261754.2	ENST00000561778.2	CTC-523E23.1	CTC-523E23.1-001	NA	NA	NA	inter
CUST_9240_PI429285431	4.7719827	P	4.462357	P	1.23938610570737	0	lncRNA	10750-1_{1..557}	lnc-TSN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSN-2:1	chr2	122408044	122408600	+	lnc-TSN-2	lnc-TSN-2:1	ENSG00000236859	XLOC_001646	CLASP1	NA	chr2:122398044-122407052	inter
CUST_48503_PI429285431	4.482192	P	4.4371486	P	1.03171421546783	0	lncRNA	52355-1_{1..225}	hg19_lincRNAsTranscripts_TCONS_l2_00001916 range=chr1:247996652-247998156 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001916 range=chr1:247996652-247998156 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	247996652	247996876	-	NA	NA	NA	NA	OR11L1	NA	chr1:247990766-248005198	inter
CUST_34966_PI429285431	0.89622784	A	0.89440495	A	1.00126432965566	0	lncRNA	36383-1_{1..759}	n341888|BC040886|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4368|NULL|-0.8282490|-0.3116492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341888|BC040886|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4368|NULL|-0.8282490|-0.3116492	chr12	 38937978	 38938736	-	NA	NA	NA	NA	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20"	NA	inter
CUST_32014_PI429285431	3.7666686	P	4.0432777	P	0.825529056328054	0	lncRNA	33735-1_{1..2443}	n338579|AK125724|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|985|NULL|2.3390300|-0.2854691	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338579|AK125724|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|985|NULL|2.3390300|-0.2854691	chr19	 37892305	 37894747	-	NA	NA	NA	NA	ZNF527	NA	chr19:37882305-37883966	inter
CUST_31166_PI429285431	1.0474741	A	1.622593	A	0.671230929479336	0	lncRNA	32961-1_{1..289}	n337579|EF565130|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395619|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395619|-1.4185400|-0.3423448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337579|EF565130|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395619|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395619|-1.4185400|-0.3423448	chr10	  6829848	  6830136	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23881_PI429285431	7.75013	P	8.207039	P	0.72854550952292	0	lncRNA	25440-1_{1..731}	lnc-HEATR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HEATR2-1:1	chr7	   647502	   648232	+	lnc-HEATR2-1	lnc-HEATR2-1:1	ENSG00000237181.1	AC147651.4	PRKAR1B	NA	chr7:637502-658119	inner
CUST_6801_PI429285431	1.1015586	A	1.0279295	A	1.05236057035017	0	lncRNA	6749-1_{1..482}	"transcript_id ""ENST00000425979.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425979.1"" | genecode_v17"	chr21	 23119293	 23119774	+	ENSG00000233997.1	ENST00000425979.1	AP000475.2	AP000475.2-002	NA	NA	NA	inter
CUST_41680_PI429285431	0.8984642	A	0.9020723	A	0.997502180413633	0	lncRNA	43140-1_{1..110}	ENST00000385011 ncrna:miRNA chromosome:GRCh37:2:177015031:177015140:1 gene:ENSG00000207744 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385011 ncrna:miRNA chromosome:GRCh37:2:177015031:177015140:1 gene:ENSG00000207744 gene_biotype:miRNA transcript_biotype:miRNA	chr2	177015031	177015140	+	ENSG00000207744	ENST00000385011	NA	NA	HOXD4	NA	chr2:177016113-177017951	inter
CUST_28414_PI429285431	0.9253636	A	0.99014634	A	0.956089287256662	0	lncRNA	30074-1_{1..520}	n325737|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044784|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044784|-1.1413500|-0.3639081	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325737|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044784|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044784|-1.1413500|-0.3639081	chr13	 45153225	 45153744	-	NA	NA	NA	NA	TSC22D1	NA	chr13:45143225-45150701	inter
CUST_37034_PI429285431	1.2833958	A	0.9142321	A	1.29160389794889	0	lncRNA	38172-1_{1..479}	n345489|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1038|NULL|-1.3282700|-0.3716367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345489|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1038|NULL|-1.3282700|-0.3716367	chr1	231429158	231429636	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70"	NA	inter
CUST_2666_PI429285431	5.765233	P	5.918881	P	0.898974438657547	0	lncRNA	2652-1_{1..446}	"transcript_id ""ENST00000422023.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422023.1"" | genecode_v17"	chr6	148338558	148339003	-	ENSG00000234675.1	ENST00000422023.1	RP11-242F11.2	RP11-242F11.2-001	NA	NA	NA	inter
CUST_45737_PI429285431	1.108241	A	0.90476036	A	1.15147304558425	0	lncRNA	50086-1_{1..1109}	"gi|219277666|ref|NR_024627.1| Homo sapiens KCNQ1 downstream neighbor (non-protein coding) (KCNQ1DN), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|219277666|ref|NR_024627.1| Homo sapiens KCNQ1 downstream neighbor (non-protein coding) (KCNQ1DN), non-coding RNA"	Chr11	  2891263	  2892371	+	55539	NR_024627.1	NA	NA	NA	NA	NA	inter
CUST_14967_PI429285431	0.91251135	A	0.9187684	A	0.99567233488172	0	lncRNA	16630-1_{1..565}	lnc-IRF8-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-IRF8-4:1	chr16	 86233118	 86233682	+	lnc-IRF8-4	lnc-IRF8-4:1	XLOC_011812	linc-FOXF1-3	NA	NA	NA	inter
CUST_50370_PI429285431	0.91489434	A	0.9132528	A	1.00113847639558	0	lncRNA	54084-1_{1..2370}	hg19_lincRNAsTranscripts_TCONS_l2_00030300 range=chrX:102071919-102140897 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030300 range=chrX:102071919-102140897 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	102071919	102074288	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21405_PI429285431	0.9159858	A	0.920634	A	0.99678329798268	0	lncRNA	23026-1_{1..744}	lnc-IL16-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL16-1:3	chr15	 81654260	 81655003	+	lnc-IL16-1	lnc-IL16-1:3	ENSG00000259343.1	RP11-761I4.3	TMC3	"hg19_refFlat_TMC3:range=chr15:81624760-816664185'pad=0,hg19_refFlat_TMC3:range=chr15:81624760-816664185'pad=0 3'pad=0 strand=- repeatMasking=none,-100.80chr15:81644260-81664378"	NA	inner
CUST_41237_PI429285431	3.7890458	P	4.321658	P	0.691301901954937	0	lncRNA	42156-1_{1..115}	ENST00000583555 ncrna:miRNA chromosome:GRCh37:14:107259100:107259214:-1 gene:ENSG00000265929 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583555 ncrna:miRNA chromosome:GRCh37:14:107259100:107259214:-1 gene:ENSG00000265929 gene_biotype:miRNA transcript_biotype:miRNA	chr14	107259100	107259214	-	ENSG00000265929	ENST00000583555	NA	NA	NA	NA	NA	inter
CUST_49831_PI429285431	2.1212401	A	1.9244692	A	1.1461301657842	0	lncRNA	53589-1_{1..766}	hg19_lincRNAsTranscripts_TCONS_l2_00025975 range=chr7:65180340-65183782 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025975 range=chr7:65180340-65183782 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 65180340	 65181105	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26194_PI429285431	4.985036	P	4.6088715	P	1.29788674706821	0	lncRNA	27705-1_{1..583}	lnc-SPPL3.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPPL3.1-3:1	chr12	121136850	121137432	-	lnc-SPPL3.1-3	lnc-SPPL3.1-3:1	ENSG00000256364.1	RP11-173P15.3	MLEC	NA	chr12:121126850-121139667	inner
CUST_48610_PI429285431	6.8628063	P	6.4550633	P	1.32660879901375	0	lncRNA	52457-1_{1..228}	hg19_lincRNAsTranscripts_TCONS_l2_00014600 range=chr2:62785198-62788934 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014600 range=chr2:62785198-62788934 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 62785198	 62785425	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9943_PI429285431	10.714074	P	10.636521	P	1.05522671892346	0	lncRNA	11466-1_{1..337}	lnc-SLC45A4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC45A4-1:1	chr8	142209236	142209572	-	lnc-SLC45A4-1	lnc-SLC45A4-1:1	XLOC_007240	linc-PTK2-1	DENND3	NA	chr8:142199236-142205901	inter
CUST_31698_PI429285431	3.9995918	P	5.1025934	P	0.465546893606802	0	lncRNA	33442-1_{1..1969}	n338227|AK094345|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|619|NULL|0.4274840|-0.2010172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338227|AK094345|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|619|NULL|0.4274840|-0.2010172	chr14	 24679664	 24681632	+	NA	NA	NA	NA	NEDD8	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CHMP4A:range=chr14:24679083-246827745'pad=0,hg19_refFlat_CHMP4A:range=chr14:24679083-246827745'pad=0 3'pad=0 strand=- repeatMasking=none,-101.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80chr14:24686057-24693202"	NA	inner
CUST_49928_PI429285431	6.6806793	P	7.309635	P	0.64664432177109	0	lncRNA	53678-1_{1..600}	hg19_lincRNAsTranscripts_TCONS_l2_00026117 range=chr7:98904247-98908748 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026117 range=chr7:98904247-98908748 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 98904247	 98904846	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3321781	5.3086686	P	5.878051	P	0.673905217225624	0	lncRNA	XR_109412	XR_109412	XR_109412	   645460	Hs.710026	FLJ44342	uncharacterized LOC645460	NA	THC2542530	NA	"PREDICTED: Homo sapiens hypothetical LOC645460 (FLJ44342), miscRNA [XR_109412]"	chr17:56066470-56066411	hs|17q22	Agilent_HUMAN_G3V2	XR_109412	XR_109412	chr17	 56066411	 56066470	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43099_PI429285431	0.98946047	A	0.91461724	A	1.05324657903008	0	lncRNA	47590-1_{1..187}	ENST00000516068 ncrna:snRNA chromosome:GRCh37:6:28378047:28378233:1 gene:ENSG00000251877 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516068 ncrna:snRNA chromosome:GRCh37:6:28378047:28378233:1 gene:ENSG00000251877 gene_biotype:snRNA transcript_biotype:snRNA	chr6	 28378047	 28378233	+	ENSG00000251877	ENST00000516068	NA	NA	ZSCAN23	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20chr6:28376002-28388233"	NA	inter
CUST_49018_PI429285431	5.1249523	P	5.9962406	P	0.546658476694917	0	lncRNA	52846-1_{1..682}	hg19_lincRNAsTranscripts_TCONS_l2_00021815 range=chr4:3916910-3957146 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021815 range=chr4:3916910-3957146 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  3916910	  3917591	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50341_PI429285431	2.999211	A	2.358134	A	1.55949291677661	0	lncRNA	54056-1_{1..922}	hg19_lincRNAsTranscripts_TCONS_l2_00029090 range=chr9:133244989-133251373 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029090 range=chr9:133244989-133251373 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	133244989	133245910	+	NA	NA	NA	NA	HMCN2	NA	chr9:133234989-133261373	inter
CUST_41057_PI429285431	9.029509	P	8.549254	P	1.39499021261178	0	lncRNA	41718-1_{1..1781}	n411744|NR_045030|lncRNA|Homosapiens||RefGeneNoncode|NR_045030||4.7978800|-0.3320956	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411744|NR_045030|lncRNA|Homosapiens||RefGeneNoncode|NR_045030||4.7978800|-0.3320956	chr1	 47100710	 47102490	-	NA	NA	NA	NA	KIAA0494	NA	chr1:47140831-47141550	inner
CUST_42381_PI429285431	1.8619503	A	0.98568964	A	1.83561138511679	0	lncRNA	45066-1_{1..136}	ENST00000516236 ncrna:snoRNA chromosome:GRCh37:21:33910609:33910744:1 gene:ENSG00000252045 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516236 ncrna:snoRNA chromosome:GRCh37:21:33910609:33910744:1 gene:ENSG00000252045 gene_biotype:snoRNA transcript_biotype:snoRNA	chr21	 33910609	 33910744	+	ENSG00000252045	ENST00000516236	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50"	NA	inter
CUST_22228_PI429285431	8.370842	P	8.303876	P	1.04751144010245	0	lncRNA	23828-1_{1..265}	lnc-FLYWCH2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FLYWCH2-1:1	chr16	  2909589	  2909853	+	lnc-FLYWCH2-1	lnc-FLYWCH2-1:1	ENSG00000263325.1	LA16c-325D7.1	PRSS22	NA	chr16:2902728-2908171	inter
LNCA_21_P0014803	8.998947	P	9.169275	P	0.88864062373067	0	lncRNA	XR_132617	XR_132617	XR_132617	NA	NA	LOC100652974	superoxide dismutase [Cu-Zn]-like	NA	NA	NA	"PREDICTED: Homo sapiens superoxide dismutase [Cu-Zn]-like (LOC100652974), miscRNA [XR_132617]"	chr16:51141631-51141690	hs|16q12.1	Agilent_HUMAN_G3V2	XR_132617	XR_132617	chr16	 51141631	 51141690	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37214_PI429285431	2.8190036	A	2.4125896	A	1.32538729950561	0	lncRNA	38326-1_{1..673}	n345649|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1198|NULL|-1.3114800|-0.3760562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345649|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1198|NULL|-1.3114800|-0.3760562	chr4	120923405	120924077	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29722_PI429285431	8.013045	P	8.097541	P	0.943113951630195	0	lncRNA	31484-1_{1..582}	n333393|BC007117|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086746|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086746|1.5601900|-0.3065043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333393|BC007117|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086746|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086746|1.5601900|-0.3065043	chr3	 98568200	 98568781	-	NA	NA	NA	NA	DCBLD2	NA	chr3:98558200-98620533	inner
CUST_40637_PI429285431	0.8952527	A	0.8933623	A	1.00131118428158	0	lncRNA	41377-2_{3001..5053}	n410141|NR_036585|lncRNA|Homosapiens||RefGeneNoncode|NR_036585||4.3937400|-0.3063774	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410141|NR_036585|lncRNA|Homosapiens||RefGeneNoncode|NR_036585||4.3937400|-0.3063774	chr6	   394738	   396790	+	NA	NA	NA	NA	IRF4	NA	chr6:391739-411443	inner
CUST_17910_PI429285431	5.6425996	P	6.154813	P	0.701145905824939	0	lncRNA	19641-1_{1..1399}	lnc-DLK1-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLK1-6:2	chr14	101361209	101362607	+	lnc-DLK1-6	lnc-DLK1-6:2	XLOC_010932	linc-DIO3-8	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20"	NA	inter
CUST_29789_PI429285431	0.92035604	A	0.9155653	A	1.00332620751586	0	lncRNA	31552-1_{1..770}	n333494|BC032043|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000092542|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000092542|-1.3499000|-0.2782786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n333494|BC032043|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000092542|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000092542|-1.3499000|-0.2782786	chr4	 29119930	 29120699	+	NA	NA	NA	NA	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20"	NA	inter
CUST_51360_PI429285431	4.8268604	P	4.563436	P	1.20032443187687	0	lncRNA	54956-1_{1..857}	hg19_lincRNAsTranscripts_TCONS_l2_00009248 range=chr15:85069991-85114032 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009248 range=chr15:85069991-85114032 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 85069991	 85070847	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_187_PI429201921	2.0139089	A	1.5172902	A	1.41090289669548	0	lncRNA	153-2_{3001..4864}	TC0Y000337.hg.1	 TCONS_l2_00031060-XLOC_l2_015960 // Broad TUCP // linc-CDY1B chrY:-:26356114-26360978 // chrY // 100 // 100 // 0 // --- // 0///TCONS_l2_00031059-XLOC_l2_015960 // Broad TUCP // linc-CDY1B chrY:-:26356113-26360978 // chrY // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:26356113-26360978	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031059-XLOC_l2_015960	linc-CDY1B	chrY	 26356113	 26360978	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48279_PI429285431	8.109314	P	8.050219	P	1.04181202901128	0	lncRNA	52140-1_{1..2316}	hg19_lincRNAsTranscripts_TCONS_l2_00001048 range=chr1:16944761-16949738 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001048 range=chr1:16944761-16949738 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 16944761	 16947076	-	NA	NA	NA	NA	NBPF1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00chr1:16934761-16939982"	NA	inter
LNCA_21_P0009518	0.918037	A	0.90437067	A	1.00951778687775	0	lncRNA	TCONS_00026398	NA	NA	NA	NA	XLOC_012749	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012749), lincRNA [TCONS_00026398]"	chr18:7508494-7508435	hs|18p11.23	Agilent_HUMAN_G3V2	TCONS_00026398	TCONS_00026398	chr18	  7508435	  7508494	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2463_PI429285431	0.9049002	A	0.8959749	A	1.00620572273407	0	lncRNA	2455-1_{1..484}	"transcript_id ""ENST00000437718.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437718.1"" | genecode_v17"	chr6	  2917128	  2917611	+	ENSG00000228365.1	ENST00000437718.1	RP1-90J20.2	RP1-90J20.2-001	NA	NA	NA	inter
CUST_14730_PI429285431	1.4679223	A	1.3764284	A	1.065472900702	0	lncRNA	16393-1_{1..310}	lnc-SLC12A7-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC12A7-3:1	chr5	  1161326	  1161635	-	lnc-SLC12A7-3	lnc-SLC12A7-3:1	XLOC_004701	linc-SLC12A7-1	NA	NA	NA	inter
CUST_18504_PI429285431	5.0450144	P	4.4063163	P	1.55692354444576	0	lncRNA	20219-1_{1..518}	lnc-MYC-2:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYC-2:17	chr8	129008807	129009324	+	lnc-MYC-2	lnc-MYC-2:17	ENSG00000249859	PVT1	NA	NA	NA	inter
CUST_45711_PI429285431	2.0438013	A	1.702562	A	1.26684436792462	0	lncRNA	50079-1_{1..3000}	"gi|375298751|ref|NR_046332.1| Homo sapiens BR serine/threonine kinase 2 (BRSK2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375298751|ref|NR_046332.1| Homo sapiens BR serine/threonine kinase 2 (BRSK2), transcript variant 6, non-coding RNA"	Chr11	  1431673	  1434672	+	9024	NR_046332.1	NA	NA	NA	NA	NA	inter
CUST_17641_PI429285431	2.4348187	A	1.9754503	A	1.37493974906733	0	lncRNA	19369-1_{1..242}	lnc-INTS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INTS1-1:1	chr7	  1548941	  1549182	-	lnc-INTS1-1	lnc-INTS1-1:1	XLOC_006332	linc-INTS1	INTS1	NA	chr7:1538941-1544018	inter
CUST_33482_PI429285431	0.8946629	A	0.8894598	A	1.00361302539247	0	lncRNA	35055-1_{1..3000}	n340222|BC042524|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2683|NULL|-1.2545000|-0.4649616	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340222|BC042524|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2683|NULL|-1.2545000|-0.4649616	chr4	131729665	131732664	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50493_PI429285431	4.5818405	P	4.178693	P	1.32238979831858	0	lncRNA	54189-1_{1..435}	hg19_lincRNAsTranscripts_TCONS_l2_00030307 range=chrX:102139071-102152670 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030307 range=chrX:102139071-102152670 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	102139071	102139505	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3578_PI429285431	0.9203919	A	1.4227071	A	0.705972944379114	0	lncRNA	3548-1_{1..432}	"transcript_id ""ENST00000435539.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435539.1"" | genecode_v17"	chr10	  2114039	  2114470	+	ENSG00000226694.2	ENST00000435539.1	RP11-69C17.2	RP11-69C17.2-002	NA	NA	NA	inter
CUST_34644_PI429285431	2.0759273	A	1.0055999	A	2.0999098591337	0	lncRNA	36097-1_{1..3000}	n341543|BX648186|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4013|NULL|-0.9953530|-0.3314860	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341543|BX648186|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4013|NULL|-0.9953530|-0.3314860	chr8	 79749763	 79752762	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012670	1.0546194	A	0.9006624	A	1.1126169581764	0	lncRNA	TCONS_l2_00021187	NA	NA	NA	NA	XLOC_l2_011170	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011170), lincRNA [TCONS_l2_00021187]"	chr4:80520890-80509233	hs|4q21.21	Agilent_HUMAN_G3V2	TCONS_l2_00021187	TCONS_l2_00021187	chr4	 80509233	 80520890	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14910_PI429285431	0.91801625	A	0.91736966	A	1.00044828248405	0	lncRNA	16573-1_{1..217}	lnc-DNAH6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAH6-2:1	chr2	 84303151	 84303367	+	lnc-DNAH6-2	lnc-DNAH6-2:1	XLOC_001549	linc-DNAH6-1	NA	NA	NA	inter
CUST_17575_PI429285431	2.4172106	A	2.8997743	A	0.715704670775078	0	lncRNA	19302-3_{6001..9000}	lnc-NAP1L2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NAP1L2-1:5	chrX	 73067217	 73070216	-	lnc-NAP1L2-1	lnc-NAP1L2-1:5	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70"	NA	inter
CUST_6051_PI429285431	4.6472845	P	3.2558107	P	2.62346546748611	0	lncRNA	5977-1_{1..613}	"transcript_id ""ENST00000581029.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581029.1"" | genecode_v17"	chr18	  3466248	  3466860	+	ENSG00000266835.1	ENST00000581029.1	RP11-838N2.4	RP11-838N2.4-002	TGIF1	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80chr18:3456248-3458409"	NA	inter
CUST_10558_PI429285431	5.853265	P	5.8483334	P	1.00342417377016	0	lncRNA	12089-1_{1..1225}	lnc-NACA2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NACA2-2:4	chr17	 59473370	 59474594	-	lnc-NACA2-2	lnc-NACA2-2:4	XLOC_012542	linc-APPBP2-2	BCAS3	NA	chr17:59463370-59470199	inter
CUST_49278_PI429285431	0.9055161	A	0.89785147	A	1.00532685417886	0	lncRNA	53097-1_{1..2083}	hg19_lincRNAsTranscripts_TCONS_l2_00023627 range=chr5:710472-767323 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023627 range=chr5:710472-767323 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	   710472	   712554	-	NA	NA	NA	NA	ZDHHC11B	NA	chr5:732645-762215	inter
CUST_28818_PI429285431	1.1683323	A	0.92823476	A	1.18107251054187	0	lncRNA	30526-1_{1..451}	n326231|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098811|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098811|-1.4131900|-0.3883949	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326231|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098811|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098811|-1.4131900|-0.3883949	chr1	217675116	217675566	-	NA	NA	NA	NA	GPATCH2	NA	chr1:217665116-217692607	inner
LNCA_21_P0009219	0.9144616	A	0.90129066	A	1.00917120000421	0	lncRNA	TCONS_00025302	NA	NA	NA	NA	XLOC_012105	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012105), lincRNA [TCONS_00025302]"	chr17:8671606-8671665	hs|17p13.1	Agilent_HUMAN_G3V2	TCONS_00025302	TCONS_00025302	chr17	  8671606	  8671665	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38769_PI429285431	0.9248619	A	0.92859477	A	0.997415916191569	0	lncRNA	39762-1_{1..2732}	n384392|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fux.1||1.3407600|-0.2618228	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n384392|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fux.1||1.3407600|-0.2618228	chr3	195426821	195429552	+	NA	NA	NA	NA	MUC20	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr3:195447753-195448745"	NA	inter
CUST_37671_PI429285431	4.0876727	P	3.616562	P	1.38617624480387	0	lncRNA	38764-1_{1..292}	n346157|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1707|NULL|-1.6205300|-0.3348476	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346157|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1707|NULL|-1.6205300|-0.3348476	chr2	 96643874	 96644165	-	NA	NA	NA	NA	LOC400986	NA	chr2:96633874-96657980	inter
CUST_14808_PI429285431	0.93645024	A	0.98572314	A	0.966423271277784	0	lncRNA	16469-1_{1..442}	lnc-SLITRK6-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK6-6:2	chr13	 85458187	 85458628	-	lnc-SLITRK6-6	lnc-SLITRK6-6:2	XLOC_010676	linc-SLITRK1-7	NA	NA	NA	inter
CUST_49600_PI429285431	0.9089091	A	0.9010281	A	1.00547764064288	0	lncRNA	53390-1_{1..213}	hg19_lincRNAsTranscripts_TCONS_l2_00025015 range=chr6:160899545-160901219 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025015 range=chr6:160899545-160901219 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	160899545	160899757	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00321692	5.0790424	P	5.183204	P	0.930345441469095	0	lncRNA	ENST00000447453	NA	NA	NA	NA	XLOC_002142	NA	ENST00000447453	NA	NA	"BROAD Institute lincRNA (XLOC_002142), lincRNA [TCONS_00003315]"	chr2:67405075-67405016	hs|2p14	Agilent_HUMAN_G3V2	ENST00000447453	ENST00000447453	chr2	 67405016	 67405075	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10681_PI429285431	4.6964827	P	5.1752424	P	0.717594282198053	0	lncRNA	12214-1_{1..249}	lnc-RAD23B-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAD23B-7:1	chr9	110355709	110355957	+	lnc-RAD23B-7	lnc-RAD23B-7:1	XLOC_007509	linc-ACTL7A-7	NA	NA	NA	inter
CUST_30013_PI429285431	1.2032309	A	0.92115575	A	1.21594261999746	0	lncRNA	31781-1_{1..454}	n334447|U11874|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218062|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218062|-0.7392910|-0.2530161	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334447|U11874|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218062|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218062|-0.7392910|-0.2530161	chr2	218990742	218991195	+	NA	NA	NA	NA	CXCR2	NA	chr2:218990013-219001976	inner
CUST_5585_PI429285431	1.0813334	A	1.040928	A	1.02840276915563	0	lncRNA	5514-1_{1..146}	"transcript_id ""ENST00000565901.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565901.1"" | genecode_v17"	chr16	 65261798	 65261943	-	ENSG00000260834.1	ENST00000565901.1	RP11-256I9.2	RP11-256I9.2-002	NA	NA	NA	inter
CUST_38403_PI429285431	11.583282	P	12.212931	P	0.646333645716137	0	lncRNA	39436-3_{6001..7846}	n382339|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yxn.3||-0.8301960|-0.2574107	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n382339|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yxn.3||-0.8301960|-0.2574107	chr15	 25310603	 25312448	+	NA	NA	NA	NA	SNRPN	NA	chr15:25294603-25377621	inter
CUST_30053_PI429285431	0.8983215	A	0.891392	A	1.00481471706762	0	lncRNA	31822-1_{1..315}	n334557|U52701|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220268_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220268_06|-0.9864770|-0.2232275	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334557|U52701|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220268_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220268_06|-0.9864770|-0.2232275	chr6	  3445787	  3446101	-	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40chr6:3435787-3456793"	NA	inner
CUST_11486_PI429285431	6.3458657	P	6.4999933	P	0.89867563920757	0	lncRNA	13054-1_{1..701}	lnc-ST8SIA4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ST8SIA4-4:1	chr5	 99723933	 99724633	-	lnc-ST8SIA4-4	lnc-ST8SIA4-4:1	XLOC_004937	linc-CHD1-3	NA	NA	NA	inter
CUST_41320_PI429285431	4.0706754	P	5.0639477	P	0.50233708816368	0	lncRNA	42361-1_{1..72}	ENST00000581239 ncrna:miRNA chromosome:GRCh37:9:137741144:137741215:-1 gene:ENSG00000264744 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581239 ncrna:miRNA chromosome:GRCh37:9:137741144:137741215:-1 gene:ENSG00000264744 gene_biotype:miRNA transcript_biotype:miRNA	chr9	137741144	137741215	-	ENSG00000264744	ENST00000581239	NA	NA	COL5A1	NA	chr9:137731144-137736689	inter
CUST_11903_PI429285431	2.268712	A	2.7240343	A	0.729347216775694	0	lncRNA	13485-1_{1..934}	lnc-TSPY2-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TSPY2-3:4	chrY	  6325702	  6326635	+	lnc-TSPY2-3	lnc-TSPY2-3:4	XLOC_008281	linc-TBL1Y-1	NA	NA	NA	inter
CUST_27279_PI429285431	0.9058216	A	0.89893377	A	1.00478569497813	0	lncRNA	28835-1_{1..595}	n324428|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317437|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317437|-1.4020200|-0.4817697	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324428|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317437|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317437|-1.4020200|-0.4817697	chr6	109179549	109180143	+	NA	NA	NA	NA	ARMC2	NA	chr6:109169549-109207014	inner
LNCA_21_P0006210	2.7236278	A	3.33531	P	0.654433179814311	0	lncRNA	TCONS_00016128	NA	NA	NA	NA	XLOC_007514	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007514), lincRNA [TCONS_00016128]"	chr9:111035873-111035932	hs|9q31.2	Agilent_HUMAN_G3V2	TCONS_00016128	TCONS_00016128	chr9	111035873	111035932	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42107_PI429285431	0.9008026	A	0.8938339	A	1.00484201963048	0	lncRNA	44066-1_{1..73}	ENST00000577243 ncrna:miRNA chromosome:GRCh37:1:212250955:212251027:1 gene:ENSG00000264358 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577243 ncrna:miRNA chromosome:GRCh37:1:212250955:212251027:1 gene:ENSG00000264358 gene_biotype:miRNA transcript_biotype:miRNA	chr1	212250955	212251027	+	ENSG00000264358	ENST00000577243	NA	NA	DTL	NA	chr1:212240955-212261027	inner
CUST_18277_PI429285431	2.2597005	A	1.574968	A	1.60740391404994	0	lncRNA	20008-1_{1..1287}	lnc-AL901608.1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL901608.1-3:3	chr14	106067756	106069042	-	lnc-AL901608.1-3	lnc-AL901608.1-3:3	ENSG00000227468	AL928742.12	NA	NA	NA	inter
CUST_4008_PI429285431	10.070675	P	9.520106	P	1.46466324632159	0	lncRNA	3969-1_{1..1755}	"transcript_id ""ENST00000511013.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511013.2"" | genecode_v17"	chr11	 69902336	 69904090	-	ENSG00000248844.2	ENST00000511013.2	RP11-626H12.3	RP11-626H12.3-001	NA	NA	NA	inter
CUST_1199_PI429285431	11.013524	P	10.661036	P	1.27676056749358	0	lncRNA	1190-1_{1..850}	"transcript_id ""ENST00000452381.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452381.1"" | genecode_v17"	chr2	196397759	196398608	+	ENSG00000223466.1	ENST00000452381.1	AC064834.2	AC064834.2-001	NA	NA	NA	inter
LNCA_21_P0002365	0.9270924	A	0.91497874	A	1.00843189916489	0	lncRNA	TCONS_00004042	NA	NA	NA	NA	XLOC_001880	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001880), lincRNA [TCONS_00004042]"	chr2:223642207-223642266	hs|2q36.1	Agilent_HUMAN_G3V2	TCONS_00004042	TCONS_00004042	chr2	223642207	223642266	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28479_PI429285431	0.9024654	A	0.9083002	A	0.995963792301641	0	lncRNA	30146-1_{1..635}	n325821|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141934|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141934|-1.0385900|-0.2371375	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325821|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141934|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141934|-1.0385900|-0.2371375	chr11	130562126	130562760	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_20199_PI429285431	0.91780984	A	0.92187977	A	0.9971829149474	0	lncRNA	21843-1_{1..651}	lnc-AC073348.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC073348.1-1:1	chr7	112785718	112786368	+	lnc-AC073348.1-1	lnc-AC073348.1-1:1	ENSG00000225457.1	RP11-736E3.1	NA	NA	NA	inter
CUST_23795_PI429285431	3.0902739	A	2.9878805	A	1.07355298731524	0	lncRNA	25360-1_{1..2296}	lnc-PTPRC-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPRC-3:1	chr1	199360449	199362744	+	lnc-PTPRC-3	lnc-PTPRC-3:1	ENSG00000231718.1	RP11-382E9.1	NA	NA	NA	inter
CUST_13337_PI429285431	5.69422	P	5.7315454	P	0.974459816601089	0	lncRNA	14974-1_{1..639}	lnc-RP11-17A1.2.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-17A1.2.1-1:2	chr11	 22881923	 22882561	-	lnc-RP11-17A1.2.1-1	lnc-RP11-17A1.2.1-1:2	XLOC_009393	linc-SVIP	LOC100500938	NA	chr11:22871923-22881972	inner
CUST_50438_PI429285431	7.2420993	P	6.9799104	P	1.19929693405772	0	lncRNA	54141-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00030193 range=chrX:47657379-47670374 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030193 range=chrX:47657379-47670374 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 47660379	 47663378	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30200_PI429285431	1.1892786	A	1.4934244	A	0.809921618121532	0	lncRNA	31975-1_{1..271}	n334993|AJ459868|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248125|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248125|-1.0669300|-0.2449269	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334993|AJ459868|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248125|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248125|-1.0669300|-0.2449269	chr7	143652104	143652374	+	NA	NA	NA	NA	OR2F1	NA	chr7:143657020-143658108	inter
CUST_7090_PI429285431	8.266684	P	8.255505	P	1.00777879113981	0	lncRNA	7025-1_{1..829}	"transcript_id ""ENST00000602895.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602895.1"" | genecode_v17"	chrX	 73164178	 73165006	+	ENSG00000225470.2	ENST00000602895.1	JPX	JPX-010	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20"	NA	inter
CUST_3904_PI429285431	1.109216	A	1.6426331	A	0.690916322401256	0	lncRNA	3873-1_{1..646}	"transcript_id ""ENST00000525133.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525133.1"" | genecode_v17"	chr11	 32154245	 32154890	+	ENSG00000255375.1	ENST00000525133.1	RP1-65P5.5	RP1-65P5.5-001	NA	NA	NA	inter
CUST_12079_PI429285431	1.7472233	A	1.7803669	A	0.977288486246081	0	lncRNA	13671-1_{1..475}	lnc-BEST3-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BEST3-1:5	chr12	 70132058	 70132532	-	lnc-BEST3-1	lnc-BEST3-1:5	XLOC_010123	linc-BEST3-1	RAB3IP	NA	chr12:70132631-70142255	inter
CUST_11978_PI429285431	0.9242194	A	1.1783215	A	0.838508840796103	0	lncRNA	13558-1_{1..668}	lnc-RP11-552I14.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-552I14.1.1-1:2	chr12	103557340	103558007	+	lnc-RP11-552I14.1.1-1	lnc-RP11-552I14.1.1-1:2	XLOC_009858	linc-STAB2-2	NA	NA	NA	inter
CUST_26678_PI429285431	7.238098	P	7.003244	P	1.17678764088546	0	lncRNA	28174-1_{1..2586}	lncrnadb|p53_mRNA_NM_000546.4_(Human)_TP53_transcript_variant_1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncrnadb20130808	"lncrnadb20130808,NONCODERv3,"	>lncrnadb|p53_mRNA_NM_000546.4_(Human)_TP53_transcript_variant_1	NA	NA	     2585	NA	NA	NA	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00"	NA	Unknown
CUST_10346_PI429285431	0.9205043	A	1.0257064	A	0.929674699968493	0	lncRNA	11875-1_{1..311}	lnc-C5orf63-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf63-1:1	chr5	126565407	126565717	-	lnc-C5orf63-1	lnc-C5orf63-1:1	XLOC_004988	linc-FLJ44606-2	NA	NA	NA	inter
CUST_29300_PI429285431	1.7582909	A	1.8316497	A	0.950422700560365	0	lncRNA	31051-1_{1..287}	n332465|EF624227|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000469609|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000469609|1.6611400|-0.0391745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332465|EF624227|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000469609|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000469609|1.6611400|-0.0391745	chr2	 89185399	 89185685	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23016_PI429285431	0.9092961	A	0.9063672	A	1.00203222094475	0	lncRNA	24588-1_{1..573}	lnc-PTPRU-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPRU-1:1	chr1	 29551235	 29551807	+	lnc-PTPRU-1	lnc-PTPRU-1:1	ENSG00000237934.1	RP11-467D18.2	MECR	NA	chr1:29541235-29557454	inner
CUST_4639_PI429285431	0.90412253	A	0.8971557	A	1.00484071716994	0	lncRNA	4585-1_{1..496}	"transcript_id ""ENST00000437777.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437777.1"" | genecode_v17"	chr13	 66440306	 66440801	+	ENSG00000234767.1	ENST00000437777.1	RP11-223F20.2	RP11-223F20.2-001	NA	NA	NA	inter
CUST_12588_PI429285431	0.9218917	A	1.2740916	A	0.783388633004803	0	lncRNA	14201-1_{1..387}	lnc-KCNS3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNS3-1:1	chr2	 18734134	 18734520	+	lnc-KCNS3-1	lnc-KCNS3-1:1	XLOC_001373	linc-RHOB-9	NT5C1B-RDH14	NA	chr2:18735989-18744485	inter
CUST_50382_PI429285431	0.90503925	A	0.89161354	A	1.0093494284186	0	lncRNA	54091-1_{1..860}	hg19_lincRNAsTranscripts_TCONS_l2_00030599 range=chrX:130928068-130964608 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030599 range=chrX:130928068-130964608 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	130928068	130928927	-	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20"	NA	inter
CUST_11116_PI429285431	1.3858606	A	0.8961603	A	1.40415315198418	0	lncRNA	12674-1_{1..880}	lnc-THBS1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THBS1-1:4	chr15	 39784717	 39785596	+	lnc-THBS1-1	lnc-THBS1-1:4	XLOC_011217	linc-THBS1-1	NA	NA	NA	inter
CUST_30819_PI429285431	0.91311896	A	0.9052994	A	1.0054348213158	0	lncRNA	32606-1_{1..397}	n336748|Z77832|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328124|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328124|-0.9901770|-0.2360357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336748|Z77832|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328124|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328124|-0.9901770|-0.2360357	chr14	 22466124	 22466520	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006907	0.98477775	A	0.921496	A	1.04483979411118	0	lncRNA	TCONS_00018328	NA	NA	NA	NA	XLOC_008608	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008608), lincRNA [TCONS_00018328]"	chr10:110540709-110540768	hs|10q25.1	Agilent_HUMAN_G3V2	TCONS_00018328	TCONS_00018328	chr10	110540709	110540768	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11453_PI429285431	1.0143058	A	0.90271676	A	1.08041759502023	0	lncRNA	13020-2_{3001..4040}	lnc-RP11-1220K2.2.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-1220K2.2.1-1:2	chr7	141922670	141923709	+	lnc-RP11-1220K2.2.1-1	lnc-RP11-1220K2.2.1-1:2	XLOC_006277	linc-MTRNR2L6-3	NA	NA	NA	inter
CUST_41764_PI429285431	6.4380827	P	7.8570414	P	0.373982145416217	0	lncRNA	43325-1_{1..78}	ENST00000583318 ncrna:miRNA chromosome:GRCh37:4:75192603:75192680:1 gene:ENSG00000265720 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583318 ncrna:miRNA chromosome:GRCh37:4:75192603:75192680:1 gene:ENSG00000265720 gene_biotype:miRNA transcript_biotype:miRNA	chr4	 75192603	 75192680	+	ENSG00000265720	ENST00000583318	NA	NA	NA	NA	NA	inter
CUST_38637_PI429285431	2.833805	A	2.8029964	A	1.02158454176716	0	lncRNA	39640-1_{1..731}	n383843|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wiv.1||-0.6716500|-0.1555431	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383843|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wiv.1||-0.6716500|-0.1555431	chr20	  3650541	  3651271	-	NA	NA	NA	NA	ADAM33	NA	chr20:3648620-3661272	inner
CUST_35623_PI429285431	0.8884685	A	0.8966097	A	0.994372842271944	0	lncRNA	37038-1_{1..573}	n342766|BC038767|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5269|NULL|-0.9077380|-0.3074180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342766|BC038767|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5269|NULL|-0.9077380|-0.3074180	chr11	 64187862	 64188434	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00804417	5.557614	P	6.0527425	P	0.709498480672768	0	lncRNA	XR_108543	XR_108543	XR_108543	NA	NA	LOC100507376	NA	NA	THC2666657	NA	"PREDICTED: Homo sapiens hypothetical LOC100507376, transcript variant 1 (LOC100507376), miscRNA [XR_108543]"	chr4:6675592-6675533	hs|4p16.1	Agilent_HUMAN_G3V2	XR_108543	XR_108543	chr4	  6675533	  6675592	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22183_PI429285431	3.852602	P	3.5250664	P	1.25486798733068	0	lncRNA	23784-2_{3001..6000}	lnc-ARC-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARC-1:4	chr8	143754347	143757346	-	lnc-ARC-1	lnc-ARC-1:4	ENSG00000234616.3	JRK	PSCA	NA	chr8:143751726-143761350	inner
CUST_24560_PI429285431	8.612144	P	9.042413	P	0.742123398613939	0	lncRNA	26109-1_{1..3000}	lnc-LMAN1L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LMAN1L-1:2	chr15	 75122471	 75125470	+	lnc-LMAN1L-1	lnc-LMAN1L-1:2	ENSG00000261606.1	RP11-414J4.2	CPLX3	NA	chr15:75118951-75124136	inner
CUST_11701_PI429285431	0.9181384	A	0.9245678	A	0.995553395069625	0	lncRNA	13279-1_{1..573}	lnc-RNF7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF7-1:1	chr3	141493422	141493994	+	lnc-RNF7-1	lnc-RNF7-1:1	XLOC_002840	linc-GRK7	GRK7	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90chr3:141497043-141503540"	NA	inter
CUST_23568_PI429285431	4.904973	P	5.107397	P	0.86908910212885	0	lncRNA	25136-1_{1..770}	lnc-KIAA1147-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1147-1:1	chr7	141356344	141357113	-	lnc-KIAA1147-1	lnc-KIAA1147-1:1	ENSG00000244701.1	RP5-894A10.2	AGK	"hg19_refFlat_AGK:range=chr7:141255267-1413527245'pad=0,hg19_refFlat_AGK:range=chr7:141255267-1413527245'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20chr7:141346344-141354209"	NA	inner
LNCA_21_P0009959	0.92641526	A	0.9249448	A	1.00101976481004	0	lncRNA	TCONS_00028177	NA	NA	NA	NA	XLOC_013535	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013535), lincRNA [TCONS_00028177]"	chr20:44085380-44085439	hs|20q13.12	Agilent_HUMAN_G3V2	TCONS_00028177	TCONS_00028177	chr20	 44085380	 44085439	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18885_PI429285431	0.91741896	A	0.9160486	A	1.00095031243134	0	lncRNA	20579-1_{1..874}	lnc-CHRM2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHRM2-2:1	chr7	136121800	136122673	+	lnc-CHRM2-2	lnc-CHRM2-2:1	ENSG00000232053	AC009784.3	NA	NA	NA	inter
CUST_21015_PI429285431	4.48565	P	4.7716722	P	0.820160290581819	0	lncRNA	22644-1_{1..567}	lnc-ATIC-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATIC-8:1	chr2	215903667	215904233	+	lnc-ATIC-8	lnc-ATIC-8:1	ENSG00000227769.2	AC072062.3	ABCA12	NA	chr2:215893667-215913765	inner
CUST_37858_PI429285431	3.1266215	A	3.8775258	P	0.59423096904826	0	lncRNA	38950-1_{1..312}	n346389|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1939|NULL|-1.3349200|-0.0498800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346389|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1939|NULL|-1.3349200|-0.0498800	chr21	 46168844	 46169155	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21410_PI429285431	6.606224	P	6.6479616	P	0.97148417478376	0	lncRNA	23031-1_{1..2811}	lnc-FAM109B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-FAM109B-1:1	chr22	 42533036	 42535846	+	lnc-FAM109B-1	lnc-FAM109B-1:1	ENSG00000237037.3	RP4-669P10.18	CYP2D6	NA	chr22:42523036-42526883	inter
CUST_19309_PI429285431	1.8459377	A	1.3703923	A	1.3904437672958	0	lncRNA	20975-1_{1..786}	lnc-PXDN-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PXDN-3:1	chr2	  1623489	  1624274	-	lnc-PXDN-3	lnc-PXDN-3:1	ENSG00000228613.1	AC144450.1	NA	NA	NA	inter
CUST_19182_PI429285431	0.92318773	A	0.92528325	A	0.998548550593253	0	lncRNA	20852-1_{1..552}	lnc-OLR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OLR1-1:1	chr12	 10342675	 10343226	-	lnc-OLR1-1	lnc-OLR1-1:1	ENSG00000255895.1	RP11-656E20.3	C12orf59	NA	chr12:10332675-10344403	inner
CUST_5504_PI429285431	6.1083455	P	6.155425	P	0.967893689448003	0	lncRNA	5436-1_{1..3000}	"transcript_id ""ENST00000568752.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568752.1"" | genecode_v17"	chr16	 33344309	 33347308	-	ENSG00000261200.1	ENST00000568752.1	RP11-989E6.10	RP11-989E6.10-001	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20"	NA	inter
CUST_41347_PI429285431	0.90801436	A	1.0788659	A	0.888318203195605	0	lncRNA	42418-1_{1..90}	ENST00000583049 ncrna:miRNA chromosome:GRCh37:20:55896558:55896647:-1 gene:ENSG00000266666 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583049 ncrna:miRNA chromosome:GRCh37:20:55896558:55896647:-1 gene:ENSG00000266666 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 55896558	 55896647	-	ENSG00000266666	ENST00000583049	NA	NA	SPO11	NA	chr20:55903609-55906647	inter
CUST_338_PI429285431	0.90677726	A	0.90087765	A	1.0040976706259	0	lncRNA	331-1_{1..657}	"transcript_id ""ENST00000447916.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447916.1"" | genecode_v17"	chr1	102665295	102665951	-	ENSG00000233359.1	ENST00000447916.1	RP11-202K23.1	RP11-202K23.1-001	NA	NA	NA	inter
CUST_20275_PI429285431	4.392668	P	3.9436529	P	1.36510800574395	0	lncRNA	21918-1_{1..457}	lnc-LMOD1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LMOD1-3:2	chr1	201798079	201798535	-	lnc-LMOD1-3	lnc-LMOD1-3:2	ENSG00000231871.1	IPO9-AS1	NAV1	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_NAV1:range=chr1:201709152-2017890605'pad=0,hg19_refFlat_NAV1:range=chr1:201709152-2017890605'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_NAV1:range=chr1:201617797-2017890605'pad=0,hg19_refFlat_NAV1:range=chr1:201617797-2017890605'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50chr1:201788079-201796102"	NA	inner
CUST_1036_PI429285431	0.9009775	A	0.8987982	A	1.00151171714469	0	lncRNA	1026-1_{1..607}	"transcript_id ""ENST00000439382.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439382.1"" | genecode_v17"	chr2	114426743	114427349	+	ENSG00000233479.1	ENST00000439382.1	AC017074.1	AC017074.1-001	NA	NA	NA	inter
CUST_28630_PI429285431	2.4780185	A	2.9954088	A	0.698634455043893	0	lncRNA	30317-1_{1..1714}	n326001|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047691|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047691|-1.1912000|-0.3003744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326001|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047691|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047691|-1.1912000|-0.3003744	chr10	 42686974	 42688687	+	NA	NA	NA	NA	LOC642424	"hg19_refFlat_NAALAD2:range=chr11:89867927-899249155'pad=0,hg19_refFlat_NAALAD2:range=chr11:89867927-899249155'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40chr10:42679211-42681264"	NA	inter
CUST_39659_PI429285431	1.052997	A	0.92335224	A	1.09402428254971	0	lncRNA	40598-1_{1..2783}	n405266|NR_001284_4|lncRNA|Homosapiens||RefGeneNoncode|NR_001284_4||0.2806270|-0.2317600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405266|NR_001284_4|lncRNA|Homosapiens||RefGeneNoncode|NR_001284_4||0.2806270|-0.2317600	chr6	  3308906	  3311688	-	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50chr6:3298906-3323510"	NA	inner
CUST_14005_PI429285431	11.041379	P	10.950812	P	1.06478857752895	0	lncRNA	15651-1_{1..263}	lnc-AQP11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AQP11-2:1	chr11	 77352267	 77352529	+	lnc-AQP11-2	lnc-AQP11-2:1	XLOC_009223	linc-C11orf67	CLNS1A	NA	chr11:77342267-77348851	inter
CUST_47224_PI429285431	0.90355766	A	0.89762783	A	1.00411870358752	0	lncRNA	51299-1_{1..2291}	"gi|337298576|ref|NR_038972.1| Homo sapiens uncharacterized LOC339593 (LOC339593), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|337298576|ref|NR_038972.1| Homo sapiens uncharacterized LOC339593 (LOC339593), non-coding RNA"	Chr20	 11247307	 11249597	-	339593	NR_038972.1	NA	NA	NA	NA	NA	inter
CUST_50416_PI429285431	7.967925	P	8.092121	P	0.917515223118009	0	lncRNA	54120-1_{1..546}	hg19_lincRNAsTranscripts_TCONS_l2_00030436 range=chrX:5224214-5225116 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030436 range=chrX:5224214-5225116 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	  5224214	  5224759	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42735_PI429285431	2.397614	A	3.195825	A	0.575061835399285	0	lncRNA	45685-1_{1..132}	ENST00000384234 ncrna:snoRNA chromosome:GRCh37:2:170584382:170584513:1 gene:ENSG00000206961 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384234 ncrna:snoRNA chromosome:GRCh37:2:170584382:170584513:1 gene:ENSG00000206961 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	170584382	170584513	+	ENSG00000206961	ENST00000384234	NA	NA	PHOSPHO2-KLHL23	NA	chr2:170574382-170594513	inner
CUST_35465_PI429285431	2.272173	A	1.9680904	A	1.23463329251158	0	lncRNA	36870-1_{1..1176}	n342550|CR618381|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5048|NULL|-1.0480700|-0.3050499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342550|CR618381|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5048|NULL|-1.0480700|-0.3050499	chr20	 23052183	 23053358	-	NA	NA	NA	NA	CD93	NA	chr20:23059993-23063359	inter
CUST_33176_PI429285431	3.3237915	A	3.5826523	P	0.835747593047174	0	lncRNA	34769-1_{1..2117}	n339867|AK090802|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2315|NULL|-1.1262300|-0.3751701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339867|AK090802|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2315|NULL|-1.1262300|-0.3751701	chr18	 44632316	 44634432	+	NA	NA	NA	NA	KATNAL2	NA	chr18:44622316-44628614	inner
CUST_14128_PI429285431	1.1463876	A	1.4383179	A	0.81680845209954	0	lncRNA	15778-1_{1..332}	lnc-VAPA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VAPA-1:1	chr18	 10020559	 10020890	+	lnc-VAPA-1	lnc-VAPA-1:1	XLOC_012624	linc-APCDD1	NA	NA	NA	inter
CUST_45492_PI429285431	3.819094	P	4.5906167	P	0.5857988637515	0	lncRNA	49905-1_{1..1725}	"gi|402478653|ref|NR_073125.1| Homo sapiens aldo-keto reductase family 1, member E2 (AKR1E2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402478653|ref|NR_073125.1| Homo sapiens aldo-keto reductase family 1, member E2 (AKR1E2), transcript variant 4, non-coding RNA"	Chr10	  4868369	  4870093	+	83592	NR_073125.1	NA	NA	NA	NA	NA	inter
CUST_39460_PI429285431	1.1057767	A	1.7791877	A	0.627022448469761	0	lncRNA	40404-1_{1..1151}	n386979|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vws.1||0.5959820|-0.2073113	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386979|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vws.1||0.5959820|-0.2073113	chr17	 16832529	 16833679	-	NA	NA	NA	NA	TNFRSF13B	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.52;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-64.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80chr17:16842398-16845819"	NA	inter
CUST_40333_PI429285431	0.8905182	A	0.88837063	A	1.00148969057883	0	lncRNA	41138-1_{1..2206}	n408378|NR_029467|lncRNA|Homosapiens||RefGeneNoncode|NR_029467||3.7149100|-0.2493192	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408378|NR_029467|lncRNA|Homosapiens||RefGeneNoncode|NR_029467||3.7149100|-0.2493192	chr1	169659805	169662010	-	NA	NA	NA	NA	SELL	NA	chr1:169659806-169680843	inner
CUST_16734_PI429285431	2.053283	A	2.9350996	A	0.542683669236898	0	lncRNA	18441-1_{1..245}	lnc-CCDC140-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC140-2:1	chr2	222688381	222688625	+	lnc-CCDC140-2	lnc-CCDC140-2:1	XLOC_001878	linc-CCDC140-1	NA	NA	NA	inter
CUST_31831_PI429285431	7.3647966	P	6.926734	P	1.3547837616505	0	lncRNA	33566-1_{1..2120}	n338377|AK055065|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|772|NULL|-1.0470700|-0.1830937	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338377|AK055065|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|772|NULL|-1.0470700|-0.1830937	chr19	 17712145	 17714264	-	NA	NA	NA	NA	UNC13A	NA	chr19:17712137-17724263	inner
CUST_13700_PI429285431	1.4214389	A	1.6945044	A	0.827559243091959	0	lncRNA	15340-1_{1..1046}	lnc-IRF2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRF2-1:2	chr4	185396307	185397352	-	lnc-IRF2-1	lnc-IRF2-1:2	XLOC_004206	linc-IRF2-1	IRF2	NA	chr4:185386307-185395726	inter
CUST_5653_PI429285431	4.619048	P	4.8545403	P	0.849395105188946	0	lncRNA	5579-1_{1..389}	"transcript_id ""ENST00000565674.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565674.1"" | genecode_v17"	chr16	 81771853	 81772241	+	ENSG00000261218.1	ENST00000565674.1	RP11-960L18.1	RP11-960L18.1-002	NA	NA	NA	inter
LNCA_19_P00316202	7.9862537	P	8.289758	P	0.810281833020496	0	lncRNA	XR_132545	XR_132545	XR_132545	NA	NA	LOC286149	uncharacterized LOC286149	NA	THC2618341	NA	"PREDICTED: Homo sapiens hypothetical LOC286149 (LOC286149), miscRNA [XR_132545]"	chr8:96085368-96085309	hs|8q22.1	Agilent_HUMAN_G3V2	XR_132545	XR_132545	chr8	 96085309	 96085368	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23507_PI429285431	6.8891287	P	7.2954636	P	0.75453780930155	0	lncRNA	25074-1_{1..224}	lnc-HDDC3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HDDC3-1:2	chr15	 91478215	 91478438	-	lnc-HDDC3-1	lnc-HDDC3-1:2	ENSG00000224441.1	AC068831.3	UNC45A	NA	chr15:91473410-91488284	inner
LNCA_21_P0005246	3.3911216	P	2.947278	A	1.3602233850181	0	lncRNA	TCONS_00013039	NA	NA	NA	NA	XLOC_006164	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006164), lincRNA [TCONS_00013039]"	chr7:89467591-89467650	hs|7q21.13	Agilent_HUMAN_G3V2	TCONS_00013039	TCONS_00013039	chr7	 89467591	 89467650	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26365_PI429285431	3.1413655	A	3.6645277	P	0.695844958731653	0	lncRNA	27872-1_{1..820}	lnc-CCDC33-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC33-1:3	chr15	 74504823	 74505642	+	lnc-CCDC33-1	lnc-CCDC33-1:3	ENSG00000259264.1	RP11-60L3.1	STRA6	"hg19_refFlat_STRA6:range=chr15:74472421-745017955'pad=0,hg19_refFlat_STRA6:range=chr15:74472421-745017955'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00chr15:74494823-74502046"	NA	inter
CUST_49451_PI429285431	2.4892895	A	2.4485695	A	1.02862705133607	0	lncRNA	53251-1_{1..1533}	hg19_lincRNAsTranscripts_TCONS_l2_00024063 range=chr6:17018288-17131674 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024063 range=chr6:17018288-17131674 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 17018288	 17019820	+	NA	NA	NA	NA	FLJ23152	NA	chr6:17102489-17131603	inner
CUST_13389_PI429285431	0.90032476	A	1.1608685	A	0.834773240902819	0	lncRNA	15025-1_{1..374}	lnc-SEL1L-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEL1L-3:1	chr14	 82284478	 82284851	-	lnc-SEL1L-3	lnc-SEL1L-3:1	XLOC_011089	linc-SEL1L-2	NA	NA	NA	inter
CUST_49982_PI429285431	3.4045444	P	3.002957	A	1.32096056678113	0	lncRNA	53722-2_{3001..3282}	hg19_lincRNAsTranscripts_TCONS_l2_00026272 range=chr7:149739412-149745413 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026272 range=chr7:149739412-149745413 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	149742412	149742693	+	NA	NA	NA	NA	NA	"hg19_refFlat_DPP6:range=chr7:153749906-1546841905'pad=0,hg19_refFlat_DPP6:range=chr7:153749906-1546841905'pad=0 3'pad=0 strand=+ repeatMasking=none,-114.10"	NA	inter
CUST_38612_PI429285431	2.7081866	A	4.4219594	P	0.304861780298615	0	lncRNA	39616-2_{3001..4525}	n383733|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tpz.2||1.1098600|-0.2745452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383733|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tpz.2||1.1098600|-0.2745452	chr2	130786571	130788095	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5982_PI429285431	1.4083152	A	1.0623062	A	1.27103961843869	0	lncRNA	5910-1_{1..597}	"transcript_id ""ENST00000584075.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584075.1"" | genecode_v17"	chr17	 75260262	 75260858	-	ENSG00000265121.1	ENST00000584075.1	RP11-285E9.5	RP11-285E9.5-001	NA	NA	NA	inter
CUST_22313_PI429285431	5.6051188	P	5.7069488	P	0.931850227426447	0	lncRNA	23912-1_{1..499}	lnc-CHMP7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHMP7-1:1	chr8	 23083318	 23083816	+	lnc-CHMP7-1	lnc-CHMP7-1:1	ENSG00000246582.2	RP11-1149O23.3	TNFRSF10A	"hg19_refFlat_TNFRSF10A:range=chr8:23049207-230825745'pad=0,hg19_refFlat_TNFRSF10A:range=chr8:23049207-230825745'pad=0 3'pad=0 strand=- repeatMasking=none,-111.90chr8:23073318-23082680"	NA	inter
CUST_37007_PI429285431	0.9116973	A	1.2808337	A	0.774245823108099	0	lncRNA	38147-2_{3001..4243}	n345464|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1013|NULL|-1.2617700|-0.2868423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n345464|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1013|NULL|-1.2617700|-0.2868423	chr1	150540096	150541338	-	NA	NA	NA	NA	MCL1	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60chr1:150547027-150552214"	NA	inter
CUST_5803_PI429285431	3.0168242	A	2.3396592	A	1.59899452610799	0	lncRNA	5728-1_{1..462}	"transcript_id ""ENST00000580085.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580085.1"" | genecode_v17"	chr17	 29119390	 29119851	+	ENSG00000266490.1	ENST00000580085.1	CTD-2349P21.9	CTD-2349P21.9-001	CRLF3	"hg19_refFlat_CRLF3:range=chr17:29111205-291516695'pad=0,hg19_refFlat_CRLF3:range=chr17:29111205-291516695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70chr17:29109702-29129851"	NA	inter
CUST_10320_PI429285431	1.8526489	A	1.4007925	A	1.36779915195894	0	lncRNA	11848-1_{1..665}	lnc-WDR65-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR65-1:2	chr1	 43610798	 43611462	+	lnc-WDR65-1	lnc-WDR65-1:2	XLOC_000162	linc-FAM183A	FAM183A	NA	chr1:43613594-43620856	inter
CUST_28500_PI429285431	3.042384	P	3.7770824	P	0.600943640817667	0	lncRNA	30168-1_{1..1623}	n325844|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051081|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051081|0.1248970|-0.0997093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325844|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051081|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051081|0.1248970|-0.0997093	chr10	134184320	134185942	-	NA	NA	NA	NA	LRRC27	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70chr10:134174320-134195010"	NA	inner
CUST_50412_PI429285431	1.1435524	A	1.0898067	A	1.03795629663436	0	lncRNA	54116-1_{1..345}	hg19_lincRNAsTranscripts_TCONS_l2_00030131 range=chrX:2536763-2540943 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030131 range=chrX:2536763-2540943 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	  2536763	  2537107	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7156_PI429285431	1.0601541	A	0.89012545	A	1.12508082707215	0	lncRNA	7166-1_{1..308}	"transcript_id ""ENST00000411094.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411094.1"" | genecode_v17"	chr1	 81717474	 81717781	+	ENSG00000223026.1	ENST00000411094.1	RN7SKP247	RN7SKP247-201	NA	NA	NA	inter
CUST_43112_PI429285431	11.897535	P	12.122428	P	0.855658484736783	0	lncRNA	47875-1_{1..120}	ENST00000517272 ncrna:snRNA chromosome:GRCh37:3:8406215:8406334:-1 gene:ENSG00000253081 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517272 ncrna:snRNA chromosome:GRCh37:3:8406215:8406334:-1 gene:ENSG00000253081 gene_biotype:snRNA transcript_biotype:snRNA	chr3	  8406215	  8406334	-	ENSG00000253081	ENST00000517272	NA	NA	NA	NA	NA	inter
CUST_31186_PI429285431	0.9070666	A	1.0853348	A	0.883763222375671	0	lncRNA	32981-1_{1..3000}	n337627|AL833277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|6|NULL|-1.0345400|-0.3490206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337627|AL833277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|6|NULL|-1.0345400|-0.3490206	chrX	 11108270	 11111269	-	NA	NA	NA	NA	ARHGAP6	NA	chrX:11155663-11160108	inner
CUST_23181_PI429285431	2.897764	A	2.6281066	A	1.20552151582103	0	lncRNA	24753-1_{1..474}	lnc-ABCC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ABCC2-1:1	chr10	101689493	101689966	+	lnc-ABCC2-1	lnc-ABCC2-1:1	ENSG00000227695.1	DNMBP-AS1	DNMBP	NA	chr10:101679493-101699595	inter
CUST_23714_PI429285431	0.908924	A	1.0702296	A	0.894215463832728	0	lncRNA	25279-1_{1..3000}	lnc-RBM42-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBM42-1:1	chr19	 36113778	 36116777	+	lnc-RBM42-1	lnc-RBM42-1:1	ENSG00000089336.6	AC002115.6	RBM42	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr19:36119980-36126251"	NA	inner
CUST_19752_PI429285431	0.91411424	A	3.2269251	A	0.201267919273808	0	lncRNA	21410-1_{1..775}	lnc-SLC36A4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC36A4-2:1	chr11	 92141213	 92141987	-	lnc-SLC36A4-2	lnc-SLC36A4-2:1	ENSG00000254705.1	RP11-675M1.2	FAT3	NA	chr11:92131213-92151342	inner
CUST_6123_PI429285431	9.1205435	P	9.182347	P	0.958065701162405	0	lncRNA	6049-1_{1..223}	"transcript_id ""ENST00000583794.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583794.1"" | genecode_v17"	chr18	 22305908	 22306130	+	ENSG00000266573.1	ENST00000583794.1	RP11-449D8.5	RP11-449D8.5-003	NA	NA	NA	inter
CUST_49317_PI429285431	1.8508339	A	1.7572235	A	1.0670371455963	0	lncRNA	53133-1_{1..413}	hg19_lincRNAsTranscripts_TCONS_l2_00022859 range=chr5:38825835-38845924 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022859 range=chr5:38825835-38845924 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 38825835	 38826247	-	NA	NA	NA	NA	OSMR	NA	chr5:38815835-38855924	inter
CUST_5740_PI429285431	5.9150004	P	5.8889337	P	1.01823227452459	0	lncRNA	5664-1_{1..2998}	"transcript_id ""ENST00000379640.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000379640.1"" | genecode_v17"	chr17	 14670900	 14673897	-	ENSG00000205325.1	ENST00000379640.1	AC005863.1	AC005863.1-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90"	NA	inter
CUST_15585_PI429285431	0.9290434	A	0.93253714	A	0.997581253861229	0	lncRNA	17270-1_{1..552}	lnc-STAP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STAP1-1:2	chr4	 66882041	 66882592	+	lnc-STAP1-1	lnc-STAP1-1:2	XLOC_003562	linc-STAP1-2	NA	NA	NA	inter
CUST_34127_PI429285431	1.2922643	A	2.9404385	A	0.319043666558604	0	lncRNA	35648-1_{1..1577}	n340963|BC027619|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3429|NULL|-1.1118900|-0.2810598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n340963|BC027619|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3429|NULL|-1.1118900|-0.2810598	chr11	  8032824	  8034400	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26600_PI429285431	1.3828584	A	0.9003857	A	1.39713623010585	0	lncRNA	28103-1_{1..822}	lnc-LEO1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LEO1-1:1	chr15	 52207043	 52207864	-	lnc-LEO1-1	lnc-LEO1-1:1	ENSG00000259748.1	RP11-56B16.3	TMOD3	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30chr15:52197043-52204335"	NA	inter
CUST_4241_PI429285431	0.9055172	A	0.89459205	A	1.00760148260728	0	lncRNA	4198-2_{3001..3299}	"transcript_id ""ENST00000547799.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547799.1"" | genecode_v17"	chr12	 48102868	 48103166	+	ENSG00000257433.1	ENST00000547799.1	RP1-197B17.3	RP1-197B17.3-001	RAPGEF3	"hg19_refFlat_RAPGEF3:range=chr12:48131350-481517415'pad=0,hg19_refFlat_RAPGEF3:range=chr12:48131350-481517415'pad=0 3'pad=0 strand=- repeatMasking=none,-100.30;hg19_refFlat_ENDOU:range=chr12:48104585-481191965'pad=0,hg19_refFlat_ENDOU:range=chr12:48104585-481191965'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_RAPGEF3:range=chr12:48131350-481523395'pad=0,hg19_refFlat_RAPGEF3:range=chr12:48131350-481523395'pad=0 3'pad=0 strand=- repeatMasking=none,-100.30chr12:48128453-48146077"	NA	inner
CUST_24604_PI429285431	3.9738936	P	4.1672997	P	0.874538558958966	0	lncRNA	26153-1_{1..450}	lnc-RLBP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RLBP1-1:2	chr15	 89630907	 89631356	-	lnc-RLBP1-1	lnc-RLBP1-1:2	ENSG00000261407.1	RP11-326A19.3	ABHD2	NA	chr15:89631381-89641172	inter
CUST_36380_PI429285431	4.7831383	P	4.7881837	P	0.996508903313358	0	lncRNA	37599-1_{1..694}	n344898|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_447|NULL|-1.5730200|-0.3001013	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344898|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_447|NULL|-1.5730200|-0.3001013	chr6	 40879971	 40880664	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.31;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90"	NA	inter
CUST_37_PI429201921	0.9128384	A	0.9014685	A	1.00791215106322	0	lncRNA	38-1_{1..1252}	TC01006218.hg.1	TCONS_l2_00002808-XLOC_l2_001382 // Broad TUCP // linc-LYST chr1:-:236105852-236107105 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:236105852-236107105	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00002808-XLOC_l2_001382	linc-LYST	chr1	236105852	236107105	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19711_PI429285431	6.2538486	P	6.4010515	P	0.90299950376543	0	lncRNA	21368-1_{1..223}	lnc-C2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2-2:1	chr6	 31851660	 31851882	+	lnc-C2-2	lnc-C2-2:1	ENSG00000237080.1	EHMT2-AS1	EHMT2	"hg19_refFlat_EHMT2:range=chr6_qbl_hap6:3141653-31592455'pad=0,hg19_refFlat_EHMT2:range=chr6_qbl_hap6:3141653-31592455'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_EHMT2:range=chr6_dbb_hap3:3133443-31510365'pad=0,hg19_refFlat_EHMT2:range=chr6_dbb_hap3:3133443-31510365'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_EHMT2:range=chr6_apd_hap1:3162615-31802155'pad=0,hg19_refFlat_EHMT2:range=chr6_apd_hap1:3162615-31802155'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_EHMT2:range=chr6_mcf_hap5:3227734-32453345'pad=0,hg19_refFlat_EHMT2:range=chr6_mcf_hap5:3227734-32453345'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_EHMT2:range=chr6:31847861-318654545'pad=0,hg19_refFlat_EHMT2:range=chr6:31847861-318654545'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_EHMT2:range=chr6_cox_hap2:3357615-33752085'pad=0,hg19_refFlat_EHMT2:range=chr6_cox_hap2:3357615-33752085'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_EHMT2:range=chr6_ssto_hap7:3180604-31901245'pad=0,hg19_refFlat_EHMT2:range=chr6_ssto_hap7:3180604-31901245'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60chr6:31847536-31861831"	NA	inner
CUST_10725_PI429285431	0.92894715	A	0.92518294	A	1.00261255834674	0	lncRNA	12263-1_{1..2207}	lnc-AC073043.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC073043.2.1-1:1	chr2	200715482	200717688	-	lnc-AC073043.2.1-1	lnc-AC073043.2.1-1:1	XLOC_002452	linc-SATB2-2	NA	NA	NA	inter
CUST_7618_PI429285431	7.000753	P	7.281351	P	0.823249707873826	0	lncRNA	9251-2_{3001..3842}	lnc-NACA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NACA2-1:1	chr17	 59485811	 59486652	-	lnc-NACA2-1	lnc-NACA2-1:1	ENSG00000245950	ENST00000502172	C17orf82	"hg19_refFlat_TBX2:range=chr17:59477538-594858675'pad=0,hg19_refFlat_TBX2:range=chr17:59477538-594858675'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.80chr17:59489112-59490641"	NA	inner
CUST_42441_PI429285431	0.91576207	A	0.89912456	A	1.01159899581994	0	lncRNA	45166-1_{1..70}	ENST00000363766 ncrna:snoRNA chromosome:GRCh37:14:101454498:101454567:1 gene:ENSG00000200636 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363766 ncrna:snoRNA chromosome:GRCh37:14:101454498:101454567:1 gene:ENSG00000200636 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101454498	101454567	+	ENSG00000200636	ENST00000363766	NA	NA	NA	NA	NA	inter
CUST_663_PI429285431	0.9305341	A	0.9382317	A	0.994678639133093	0	lncRNA	656-1_{1..674}	"transcript_id ""ENST00000591066.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591066.1"" | genecode_v17"	chr2	  4006313	  4006986	-	ENSG00000237401.2	ENST00000591066.1	AC107070.1	AC107070.1-010	NA	NA	NA	inter
CUST_17569_PI429285431	0.90634465	A	0.90423125	A	1.00146597073749	0	lncRNA	19298-1_{1..313}	lnc-GJA1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GJA1-2:1	chr6	122017737	122018049	+	lnc-GJA1-2	lnc-GJA1-2:1	XLOC_005451	linc-HSF2-2	NA	NA	NA	inter
CUST_27809_PI429285431	4.695671	P	4.9298477	P	0.850170025621809	0	lncRNA	29395-1_{1..1666}	n325037|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078288|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078288|-0.9527970|-0.2496427	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325037|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078288|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078288|-0.9527970|-0.2496427	chr20	 22328988	 22330653	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6223_PI429285431	2.6761882	A	2.7168975	A	0.972176859828287	0	lncRNA	6149-1_{1..384}	"transcript_id ""ENST00000587138.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587138.1"" | genecode_v17"	chr18	 59238575	 59238958	-	ENSG00000267316.1	ENST00000587138.1	RP11-879F14.3	RP11-879F14.3-002	NA	NA	NA	inter
CUST_41753_PI429285431	0.92671156	A	0.92295396	A	1.00260796468444	0	lncRNA	43299-1_{1..97}	ENST00000362159 ncrna:miRNA chromosome:GRCh37:14:101515887:101515983:1 gene:ENSG00000207646 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362159 ncrna:miRNA chromosome:GRCh37:14:101515887:101515983:1 gene:ENSG00000207646 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101515887	101515983	+	ENSG00000207646	ENST00000362159	NA	NA	NA	NA	NA	inter
LNCA_21_P0004263	0.9215006	A	0.9089866	A	1.008711772343	0	lncRNA	TCONS_00009994	NA	NA	NA	NA	XLOC_004420	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004420), lincRNA [TCONS_00009994]"	chr5:70966726-70966785	hs|5q13.2	Agilent_HUMAN_G3V2	TCONS_00009994	TCONS_00009994	chr5	 70966726	 70966785	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3756_PI429285431	2.6484985	A	1.9459252	A	1.62740496805501	0	lncRNA	3725-1_{1..403}	"transcript_id ""ENST00000444137.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444137.1"" | genecode_v17"	chr10	 87191699	 87192101	-	ENSG00000223993.1	ENST00000444137.1	RP11-475D12.1	RP11-475D12.1-001	NA	NA	NA	inter
CUST_46634_PI429285431	8.328197	P	8.588042	P	0.835177644267918	0	lncRNA	50809-1_{1..2569}	"gi|341915764|ref|XR_132610.1| PREDICTED: Homo sapiens sodium- and chloride-dependent creatine transporter 1-like (LOC653562), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915764|ref|XR_132610.1| PREDICTED: Homo sapiens sodium- and chloride-dependent creatine transporter 1-like (LOC653562), misc_RNA"	Chr16	 33778506	 33781074	+	653562	XR_132610.2	NA	NA	NA	NA	NA	inter
CUST_11039_PI429285431	1.101872	A	0.89502436	A	1.15416352228944	0	lncRNA	12585-1_{1..818}	lnc-WHAMM-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WHAMM-2:7	chr15	 83423381	 83424198	+	lnc-WHAMM-2	lnc-WHAMM-2:7	XLOC_011333	linc-WHAMM-1	FSD2	NA	chr15:83428024-83434082	inter
CUST_28324_PI429285431	1.1645935	A	1.8944396	A	0.602968232262596	0	lncRNA	29969-1_{1..650}	n325629|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045794|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045794|-0.7001390|-0.2387485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325629|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045794|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045794|-0.7001390|-0.2387485	chr13	110546185	110546834	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40188_PI429285431	6.8621206	P	7.1311097	P	0.829900855719774	0	lncRNA	41022-1_{1..1426}	n407969|NR_027684|lncRNA|Homosapiens||RefGeneNoncode|NR_027684||2.4545700|-0.1735433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407969|NR_027684|lncRNA|Homosapiens||RefGeneNoncode|NR_027684||2.4545700|-0.1735433	chr17	  5322960	  5324385	+	NA	NA	NA	NA	RPAIN	NA	chr17:5322961-5336340	inner
CUST_25586_PI429285431	1.3310403	A	0.90723586	A	1.34146037510501	0	lncRNA	27115-1_{1..339}	lnc-HLCS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HLCS-1:1	chr21	 38073597	 38073935	-	lnc-HLCS-1	lnc-HLCS-1:1	ENSG00000224269.1	AP000697.6	SIM2	NA	chr21:38071991-38083864	inner
CUST_42274_PI429285431	7.598398	P	7.9684234	P	0.773768873724156	0	lncRNA	44884-1_{1..106}	ENST00000516482 ncrna:snoRNA chromosome:GRCh37:X:5979685:5979790:-1 gene:ENSG00000252291 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516482 ncrna:snoRNA chromosome:GRCh37:X:5979685:5979790:-1 gene:ENSG00000252291 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	  5979685	  5979790	-	ENSG00000252291	ENST00000516482	NA	NA	NLGN4X	NA	chrX:5969685-5989790	inner
CUST_32433_PI429285431	0.9041811	A	0.89566463	A	1.00592062519578	0	lncRNA	34107-2_{3001..4691}	n339029|AL137596|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1458|NULL|-1.0582300|-0.3560839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339029|AL137596|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1458|NULL|-1.0582300|-0.3560839	chr2	177621127	177622817	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8855_PI429285431	0.9254708	A	0.91215324	A	1.00927376651769	0	lncRNA	10394-1_{1..2227}	lnc-SLA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLA2-1:1	chr20	 35222007	 35224233	-	lnc-SLA2-1	lnc-SLA2-1:1	ENSG00000246654	ENST00000500008	TGIF2	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TGIF2:range=chr20:35207178-352198345'pad=0,hg19_refFlat_TGIF2:range=chr20:35207178-352198345'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr20:35212007-35222355"	NA	inner
LNCA_21_P0012198	0.92996794	A	0.91761327	A	1.00860037723338	0	lncRNA	TCONS_l2_00017191	NA	NA	NA	NA	XLOC_l2_009182	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009182), lincRNA [TCONS_l2_00017191]"	chr21:29949453-29949394	hs|21q21.3	Agilent_HUMAN_G3V2	TCONS_l2_00017191	TCONS_l2_00017191	chr21	 29949394	 29949453	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43173_PI429285431	0.9131832	A	0.9214063	A	0.994316394566837	0	lncRNA	47987-1_{1..409}	ENST00000514061 havana:sense_intronic chromosome:GRCh37:5:93947611:93953827:-1 gene:ENSG00000270133 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000514061 havana:sense_intronic chromosome:GRCh37:5:93947611:93953827:-1 gene:ENSG00000270133 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr5	 93947611	 93948019	-	ENSG00000270133	ENST00000514061	NA	NA	KIAA0825	NA	chr5:93937611-93954309	inner
CUST_2004_PI429285431	0.9121778	A	0.9133546	A	0.999184636987138	0	lncRNA	1995-1_{1..473}	"transcript_id ""ENST00000519173.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519173.1"" | genecode_v17"	chr4	185540200	185540672	-	ENSG00000254233.1	ENST00000519173.1	RP11-242J7.1	RP11-242J7.1-002	CASP3	NA	chr4:185548850-185556096	inter
CUST_4460_PI429285431	2.9230373	A	3.2888975	P	0.776006047150862	0	lncRNA	4410-1_{1..752}	"transcript_id ""ENST00000543072.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000543072.1"" | genecode_v17"	chr12	123849500	123850251	+	ENSG00000256092.2	ENST00000543072.1	RP13-942N8.1	RP13-942N8.1-001	NA	NA	NA	inter
CUST_44550_PI429285431	5.2737365	P	4.542144	P	1.66047096949837	0	lncRNA	49135-1_{1..2658}	"gi|385137123|ref|NR_047649.1| Homo sapiens solute carrier family 38, member 9 (SLC38A9), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137123|ref|NR_047649.1| Homo sapiens solute carrier family 38, member 9 (SLC38A9), transcript variant 5, non-coding RNA"	Chr5	 54921673	 54924330	-	153129	NR_047649.1	NA	NA	NA	NA	NA	inter
CUST_18953_PI429285431	0.9817569	A	0.97856325	A	1.00221612146846	0	lncRNA	20644-1_{1..333}	lnc-ATL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ATL1-1:1	chr14	 50959234	 50959566	+	lnc-ATL1-1	lnc-ATL1-1:1	ENSG00000258528	RP11-406H23.3	MAP4K5	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60chr14:50949234-50969289"	NA	inner
CUST_15480_PI429285431	6.1322565	P	6.8097367	P	0.625256389280585	0	lncRNA	17168-1_{1..430}	lnc-C1orf200-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf200-3:1	chr1	  9514893	  9515322	-	lnc-C1orf200-3	lnc-C1orf200-3:1	XLOC_000698	linc-GPR157-2	NA	NA	NA	inter
CUST_12058_PI429285431	3.644483	P	2.5484605	A	2.13764532047565	0	lncRNA	13643-1_{1..489}	lnc-AC073043.2.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC073043.2.1-1:5	chr2	200638185	200638673	-	lnc-AC073043.2.1-1	lnc-AC073043.2.1-1:5	XLOC_002452	linc-SATB2-2	NA	NA	NA	inter
CUST_18223_PI429285431	3.1623473	P	3.6153884	P	0.730501378198107	0	lncRNA	19958-1_{1..1083}	lnc-GPHN-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-GPHN-1:2	chr14	 66965071	 66966153	+	lnc-GPHN-1	lnc-GPHN-1:2	ENSG00000196553	NCRNA00238	GPHN	NA	chr14:66974125-66975271	inter
CUST_25805_PI429285431	2.7899218	A	3.1072304	A	0.802565697361775	0	lncRNA	27326-1_{1..826}	lnc-NPBWR1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPBWR1-1:2	chr8	 54155088	 54155913	+	lnc-NPBWR1-1	lnc-NPBWR1-1:2	ENSG00000254687.1	RP11-162D9.3	OPRK1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50chr8:54145088-54164194"	NA	inner
CUST_43779_PI429285431	0.90464914	A	0.8987964	A	1.0040650502231	0	lncRNA	48511-1_{1..1531}	"gi|299829185|ref|NR_033880.1| Homo sapiens uncharacterized LOC339822 (LOC339822), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|299829185|ref|NR_033880.1| Homo sapiens uncharacterized LOC339822 (LOC339822), non-coding RNA"	Chr2	   779837	   781367	-	339822	NR_033880.1	NA	NA	NA	NA	NA	inter
CUST_37844_PI429285431	4.2553353	P	4.4678087	P	0.86305631236686	0	lncRNA	38935-1_{1..704}	n346370|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1920|NULL|-1.2712600|-0.2732803	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346370|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1920|NULL|-1.2712600|-0.2732803	chr19	 23443665	 23444368	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1765_PI429285431	10.505286	P	10.290426	P	1.16059128443825	0	lncRNA	1751-1_{1..540}	"transcript_id ""ENST00000508241.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508241.1"" | genecode_v17"	chr4	 55242169	 55242708	+	ENSG00000248518.1	ENST00000508241.1	RP11-231C18.2	RP11-231C18.2-001	NA	NA	NA	inter
CUST_30446_PI429285431	7.2177296	P	6.6352673	P	1.49740274056347	0	lncRNA	32226-1_{1..464}	n335585|CR592775|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000271970|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000271970|-1.2155000|-0.3974359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335585|CR592775|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000271970|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000271970|-1.2155000|-0.3974359	chr6	 36461666	 36462129	-	NA	NA	NA	NA	KCTD20	NA	chr6:36451666-36458319	inner
CUST_9605_PI429285431	1.2865485	A	1.4685094	A	0.881504048154415	0	lncRNA	11120-1_{1..509}	lnc-ZCWPW2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZCWPW2-1:1	chr3	 28647411	 28647919	+	lnc-ZCWPW2-1	lnc-ZCWPW2-1:1	XLOC_002605	linc-RBMS3-2	NA	NA	NA	inter
CUST_9466_PI429285431	1.1315565	A	1.1226144	A	1.00621743993978	0	lncRNA	10972-1_{1..418}	lnc-GALNTL6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GALNTL6-2:1	chr4	171977326	171977743	+	lnc-GALNTL6-2	lnc-GALNTL6-2:1	XLOC_003777	linc-GALNTL6-2	NA	NA	NA	inter
CUST_41645_PI429285431	3.2571132	P	3.775697	P	0.69805673390682	0	lncRNA	43049-1_{1..83}	ENST00000580665 ncrna:miRNA chromosome:GRCh37:16:30515240:30515322:1 gene:ENSG00000266305 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580665 ncrna:miRNA chromosome:GRCh37:16:30515240:30515322:1 gene:ENSG00000266305 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 30515240	 30515322	+	ENSG00000266305	ENST00000580665	NA	NA	ITGAL	NA	chr16:30505240-30525322	inner
CUST_29305_PI429285431	1.9811009	A	1.3925042	A	1.5037833156272	0	lncRNA	31056-1_{1..306}	n332481|EF525168|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468827|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468827|-1.1611100|-0.2051560	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332481|EF525168|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468827|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468827|-1.1611100|-0.2051560	chr8	 57080864	 57081169	-	NA	NA	NA	NA	PLAG1	NA	chr8:57073468-57102095	inner
CUST_6453_PI429285431	2.4098885	A	2.9610488	A	0.682471024355139	0	lncRNA	6394-1_{1..542}	"transcript_id ""ENST00000593082.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593082.1"" | genecode_v17"	chr19	 32491511	 32492052	-	ENSG00000267489.1	ENST00000593082.1	CTC-360P9.4	CTC-360P9.4-002	NA	NA	NA	inter
CUST_47136_PI429285431	10.247476	P	9.891066	P	1.28023619291471	0	lncRNA	51217-1_{1..1757}	"gi|396941677|ref|NR_073046.1| Homo sapiens death effector domain containing 2 (DEDD2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|396941677|ref|NR_073046.1| Homo sapiens death effector domain containing 2 (DEDD2), transcript variant 4, non-coding RNA"	Chr19	 42702745	 42704501	-	162989	NR_073046.1	NA	NA	NA	NA	NA	inter
CUST_39608_PI429285431	3.7850995	P	4.0499444	P	0.832288206816531	0	lncRNA	40550-1_{1..208}	n387655|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kss.1||-0.9133780|-0.1704150	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387655|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kss.1||-0.9133780|-0.1704150	chr7	142493821	142494028	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39544_PI429285431	9.011732	P	8.850207	P	1.11846879024977	0	lncRNA	40489-1_{1..1981}	n387457|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011emf.1||1.5159100|-0.3043202	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387457|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011emf.1||1.5159100|-0.3043202	chr6	  2336692	  2338672	+	NA	NA	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50"	NA	inter
LNCA_21_P0006561	0.9116466	A	0.91718686	A	0.996167148599634	0	lncRNA	TCONS_00017417	NA	NA	NA	NA	XLOC_007960	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007960), lincRNA [TCONS_00017417]"	chrX:40140609-40140668	hs|Xp11.4	Agilent_HUMAN_G3V2	TCONS_00017417	TCONS_00017417	chrX	 40140609	 40140668	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16450_PI429285431	4.9699283	P	5.3978906	P	0.743310915901454	0	lncRNA	18149-1_{1..915}	lnc-BARHL2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BARHL2-1:2	chr1	 90998925	 90999839	-	lnc-BARHL2-1	lnc-BARHL2-1:2	XLOC_000914	linc-GBP5-7	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
CUST_43516_PI429285431	5.411638	P	3.6094127	P	3.48757755686846	0	lncRNA	48301-3_{6001..6572}	"gi|307574635|ref|NR_036634.1| Homo sapiens transforming growth factor, beta receptor III (TGFBR3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|307574635|ref|NR_036634.1| Homo sapiens transforming growth factor, beta receptor III (TGFBR3), transcript variant 4, non-coding RNA"	Chr1	 92151900	 92152471	-	7049	NR_036634.1	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	inter
CUST_34468_PI429285431	0.90100926	A	0.89900917	A	1.00138731818112	0	lncRNA	35938-1_{1..1444}	n341342|BC015911|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3811|NULL|-1.0730500|-0.2966928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341342|BC015911|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3811|NULL|-1.0730500|-0.2966928	chr7	140860426	140861869	+	NA	NA	NA	NA	LOC100507421	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.35;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10chr7:140850426-141180180"	NA	inner
CUST_23515_PI429285431	4.054518	P	4.046654	P	1.00546579266482	0	lncRNA	25082-1_{1..693}	lnc-RNASEH1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNASEH1-2:1	chr2	  3651382	  3652074	-	lnc-RNASEH1-2	lnc-RNASEH1-2:1	ENSG00000237370.1	AC010907.2	COLEC11	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.91;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10chr2:3642637-3661832"	NA	inner
CUST_9725_PI429285431	2.1211274	A	1.4315077	A	1.61285830670711	0	lncRNA	11241-1_{1..1150}	lnc-BIRC7-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BIRC7-2:3	chr20	 61734907	 61736056	+	lnc-BIRC7-2	lnc-BIRC7-2:3	XLOC_013607	linc-BIRC7-3	NA	NA	NA	inter
CUST_33721_PI429285431	7.428991	P	7.9625473	P	0.690849661804457	0	lncRNA	35280-1_{1..1203}	n340499|BC006292|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2961|NULL|-0.0348763|-0.3300264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n340499|BC006292|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2961|NULL|-0.0348763|-0.3300264	chr17	  8076558	  8077760	-	NA	NA	NA	NA	TMEM107	NA	chr17:8076296-8079714	inner
CUST_47322_PI429285431	6.7857714	P	6.312532	P	1.38822306085407	0	lncRNA	51380-1_{1..968}	"gi|310124020|ref|XR_109628.1| PREDICTED: Homo sapiens uncharacterized MGC4294 (MGC4294), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124020|ref|XR_109628.1| PREDICTED: Homo sapiens uncharacterized MGC4294 (MGC4294), misc_RNA"	NA	NA	NA	NA	NA	XR_109628.1	NA	NA	NA	NA	NA	Unknown
CUST_14915_PI429285431	0.9298383	A	0.9491157	A	0.98672680077438	0	lncRNA	16577-1_{1..1358}	lnc-U2SURP-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-U2SURP-3:4	chr3	142660241	142661598	+	lnc-U2SURP-3	lnc-U2SURP-3:4	XLOC_002845	linc-SR140-2	NA	NA	NA	inter
CUST_730_PI429285431	5.870919	P	5.963597	P	0.937780379484926	0	lncRNA	723-1_{1..591}	"transcript_id ""ENST00000454043.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454043.1"" | genecode_v17"	chr2	  8180064	  8180654	-	ENSG00000236790.1	ENST00000454043.1	LINC00299	LINC00299-003	NA	NA	NA	inter
CUST_30379_PI429285431	1.1509478	A	1.1211591	A	1.02086259718039	0	lncRNA	32155-1_{1..749}	n335490|BC054860|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259462|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259462|0.5295520|-0.3920313	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335490|BC054860|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259462|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259462|0.5295520|-0.3920313	chr5	 98236854	 98237602	-	NA	NA	NA	NA	CHD1	NA	chr5:98226854-98262238	inner
CUST_13961_PI429285431	1.075911	A	0.911602	A	1.12062920763356	0	lncRNA	15606-1_{1..353}	lnc-TK2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TK2-4:1	chr16	 66167623	 66167975	-	lnc-TK2-4	lnc-TK2-4:1	XLOC_011980	linc-CDH11-2	NA	NA	NA	inter
CUST_33566_PI429285431	0.9063537	A	0.900442	A	1.00410608514967	0	lncRNA	35131-1_{1..576}	n340315|AF056453|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2776|NULL|-0.9376740|-0.2450312	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340315|AF056453|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2776|NULL|-0.9376740|-0.2450312	chr5	  8080298	  8080873	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42898_PI429285431	1.3146536	A	0.90793246	A	1.32566949551997	0	lncRNA	45994-1_{1..72}	ENST00000517035 ncrna:snoRNA chromosome:GRCh37:10:103027694:103027765:-1 gene:ENSG00000252844 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517035 ncrna:snoRNA chromosome:GRCh37:10:103027694:103027765:-1 gene:ENSG00000252844 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	103027694	103027765	-	ENSG00000252844	ENST00000517035	NA	NA	NA	NA	NA	inter
CUST_11300_PI429285431	0.93812335	A	0.933956	A	1.00289276288999	0	lncRNA	12863-1_{1..581}	lnc-C2orf81-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2orf81-1:1	chr2	 74635234	 74635814	-	lnc-C2orf81-1	lnc-C2orf81-1:1	XLOC_002168	linc-DCTN1	LOC100130009	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90chr2:74645222-74645332"	NA	inter
CUST_21869_PI429285431	0.9427985	A	0.9478493	A	0.99650517339272	0	lncRNA	23479-1_{1..402}	lnc-UTP23-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UTP23-3:1	chr8	116523276	116523677	+	lnc-UTP23-3	lnc-UTP23-3:1	ENSG00000227170.1	AF178030.2	TRPS1	NA	chr8:116513276-116533552	inner
CUST_14731_PI429285431	0.919524	A	0.9247416	A	0.99638996716422	0	lncRNA	16394-1_{1..924}	lnc-DIRC1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DIRC1-1:2	chr2	189464027	189464950	-	lnc-DIRC1-1	lnc-DIRC1-1:2	XLOC_002432	linc-TFPI-1	GULP1	NA	chr2:189454027-189460653	inter
CUST_27271_PI429285431	0.90066123	A	0.89812195	A	1.00176164464863	0	lncRNA	28826-1_{1..488}	n324419|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041888|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041888|-1.2139500|-0.4701500	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324419|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041888|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041888|-1.2139500|-0.4701500	chr6	112904432	112904919	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7038_PI429285431	0.9122821	A	0.9157912	A	0.997570632928838	0	lncRNA	6983-1_{1..1180}	"transcript_id ""ENST00000432359.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432359.1"" | genecode_v17"	chrX	 38629584	 38630763	+	ENSG00000235806.1	ENST00000432359.1	RP4-646N3.1	RP4-646N3.1-001	MID1IP1	NA	chrX:38660685-38665785	inter
CUST_19535_PI429285431	1.6514035	A	1.9566749	A	0.809289958482275	0	lncRNA	21191-1_{1..542}	lnc-TPCN2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TPCN2-2:1	chr11	 68781259	 68781800	+	lnc-TPCN2-2	lnc-TPCN2-2:1	ENSG00000256508.2	RP11-554A11.6	MRGPRF	NA	chr11:68771862-68780850	inter
CUST_45327_PI429285431	4.1740303	A	4.6175265	P	0.735350413279144	0	lncRNA	49768-2_{3001..6000}	"gi|213512396|ref|NR_024481.1| Homo sapiens family with sequence similarity 205, member B (FAM205B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|213512396|ref|NR_024481.1| Homo sapiens family with sequence similarity 205, member B (FAM205B), non-coding RNA"	Chr9	 34833264	 34836263	-	389715	NR_024481.1	NA	NA	NA	NA	NA	inter
CUST_7375_PI429285431	0.9134486	A	0.90806955	A	1.00373543274495	0	lncRNA	9021-1_{1..1351}	lnc-OR1J2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OR1J2-2:1	chr9	125230840	125232190	+	lnc-OR1J2-2	lnc-OR1J2-2:1	ENSG00000248142	AL359636.1	OR1J1	NA	chr9:125239237-125240205	inter
CUST_41568_PI429285431	5.1610994	P	5.344098	P	0.880870228928367	0	lncRNA	42885-1_{1..97}	ENST00000390174 ncrna:miRNA chromosome:GRCh37:13:25183217:25183313:1 gene:ENSG00000211508 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390174 ncrna:miRNA chromosome:GRCh37:13:25183217:25183313:1 gene:ENSG00000211508 gene_biotype:miRNA transcript_biotype:miRNA	chr13	 25183217	 25183313	+	ENSG00000211508	ENST00000390174	NA	NA	NA	NA	NA	inter
CUST_4887_PI429285431	3.6121018	P	3.8653798	P	0.838987952815914	0	lncRNA	4829-1_{1..494}	"transcript_id ""ENST00000554737.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554737.1"" | genecode_v17"	chr14	 73525139	 73525632	-	ENSG00000258813.1	ENST00000554737.1	RP11-109N23.4	RP11-109N23.4-001	RBM25	NA	chr14:73525221-73536123	inner
CUST_11569_PI429285431	9.779333	P	9.673254	P	1.07629905982922	0	lncRNA	13146-1_{1..281}	lnc-C6orf146-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C6orf146-2:1	chr6	  3926363	  3926643	-	lnc-C6orf146-2	lnc-C6orf146-2:1	XLOC_005586	linc-C6orf145-2	NA	NA	NA	inter
CUST_19105_PI429285431	7.036699	P	6.0340614	P	2.00365983452457	0	lncRNA	20792-3_{6001..8829}	lnc-AC012652.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-AC012652.1.1-2:1	NA	     6000	     8828	NA	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.14;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70"	NA	Unknown
CUST_8205_PI429285431	7.210945	P	7.5001993	P	0.818324924929343	0	lncRNA	9799-2_{3001..4053}	lnc-CTDSP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CTDSP2-1:2	chr12	 58290523	 58291575	-	lnc-CTDSP2-1	lnc-CTDSP2-1:2	ENSG00000245651	ENST00000499481	NA	NA	NA	inter
CUST_10554_PI429285431	1.2473685	A	1.3790009	A	0.912798040680492	0	lncRNA	12085-1_{1..573}	lnc-HNRNPA1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HNRNPA1-3:1	chr12	 54584232	 54584804	+	lnc-HNRNPA1-3	lnc-HNRNPA1-3:1	XLOC_009767	linc-HNRNPA1-1	SMUG1	NA	chr12:54575252-54582757	inter
CUST_47497_PI429285431	3.0403712	A	2.872865	A	1.12311542169461	0	lncRNA	51512-2_{3001..6000}	"gi|375065861|ref|NR_046312.1| Homo sapiens KIAA1656 protein (KIAA1656), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|375065861|ref|NR_046312.1| Homo sapiens KIAA1656 protein (KIAA1656), non-coding RNA"	Chr22	 30767800	 30770799	-	85371	NR_046312.1	NA	NA	NA	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CCDC157:range=chr22:30761990-307727345'pad=0,hg19_refFlat_CCDC157:range=chr22:30761990-307727345'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_35675_PI429285431	1.4964173	A	1.533145	A	0.974863613163871	0	lncRNA	37095-1_{1..2656}	n342834|AK024295|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5337|NULL|-0.1875810|-0.2697742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342834|AK024295|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5337|NULL|-0.1875810|-0.2697742	chr8	 22925741	 22928396	+	NA	NA	NA	NA	TNFRSF10B	NA	chr8:22915741-22926700	inter
CUST_28591_PI429285431	0.9101268	A	1.9442992	A	0.488295910329625	0	lncRNA	30271-1_{1..503}	n325952|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048457|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048457|-1.0769300|-0.1807995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325952|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048457|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048457|-1.0769300|-0.1807995	chr10	 71005568	 71006070	+	NA	NA	NA	NA	HKDC1	NA	chr10:70995568-71016916	inner
CUST_16231_PI429285431	0.91645586	A	0.91295826	A	1.0024272926953	0	lncRNA	17938-1_{1..1255}	lnc-NCOA3-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCOA3-7:1	chr20	 46585732	 46586986	+	lnc-NCOA3-7	lnc-NCOA3-7:1	XLOC_013545	linc-ARFGEF2-10	NA	NA	NA	inter
CUST_45510_PI429285431	3.5968049	P	3.7698026	P	0.88699771923695	0	lncRNA	49920-1_{1..1127}	"gi|212276208|ref|NR_015413.1| Homo sapiens uncharacterized LOC254312 (LOC254312), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|212276208|ref|NR_015413.1| Homo sapiens uncharacterized LOC254312 (LOC254312), transcript variant 1, non-coding RNA"	Chr10	 10976903	 10978029	-	254312	NR_015413.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0013443	0.917194	A	0.9036283	A	1.00944737405373	0	lncRNA	ENST00000435148	NA	NA	NA	NA	XLOC_l2_013886	NA	ENST00000435148	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013886), lincRNA [TCONS_l2_00027412]"	chr7:68737012-68736953	hs|7q11.22	Agilent_HUMAN_G3V2	ENST00000435148	ENST00000435148	chr7	 68736953	 68737012	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28872_PI429285431	7.3238235	P	7.1091638	P	1.16043016216991	0	lncRNA	30586-1_{1..615}	n326293|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098602|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098602|-1.1007900|-0.3200715	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326293|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098602|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098602|-1.1007900|-0.3200715	chr1	190094459	190095073	-	NA	NA	NA	NA	FAM5C	NA	chr1:190084459-190112713	inner
CUST_43892_PI429285431	10.17141	P	9.683158	P	1.40274425091639	0	lncRNA	48609-2_{3001..5227}	"gi|385275067|ref|NR_047655.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385275067|ref|NR_047655.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 4, non-coding RNA"	Chr2	 97261892	 97264118	-	55683	NR_047655.1	NA	NA	NA	NA	NA	inter
CUST_22734_PI429285431	2.2893736	A	2.2201247	A	1.04917031937156	0	lncRNA	24318-1_{1..255}	lnc-NR5A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NR5A1-1:1	chr9	127432303	127432557	-	lnc-NR5A1-1	lnc-NR5A1-1:1	ENSG00000229850.1	RP11-348K2.2	NR6A1	NA	chr9:127422303-127442491	inner
CUST_51592_PI429285431	4.4125466	P	4.7460265	P	0.793619896240313	0	lncRNA	55156-1_{1..367}	hg19_lincRNAsTranscripts_TCONS_l2_00011635 range=chr17:20747401-20747792 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011635 range=chr17:20747401-20747792 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 20747401	 20747767	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM108A1:range=chr19:1877199-18815655'pad=0,hg19_refFlat_FAM108A1:range=chr19:1877199-18815655'pad=0 3'pad=0 strand=- repeatMasking=none,-103.60"	NA	inter
CUST_1835_PI429285431	0.8944781	A	0.91180605	A	0.988061022292719	0	lncRNA	1824-1_{1..541}	"transcript_id ""ENST00000506386.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506386.1"" | genecode_v17"	chr4	105894869	105895409	+	ENSG00000248373.1	ENST00000506386.1	RP11-556I14.1	RP11-556I14.1-002	NA	NA	NA	inter
CUST_42595_PI429285431	1.64972	A	2.7445247	A	0.468199500363703	0	lncRNA	45444-1_{1..152}	ENST00000364672 ncrna:snoRNA chromosome:GRCh37:1:35775875:35776026:1 gene:ENSG00000201542 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364672 ncrna:snoRNA chromosome:GRCh37:1:35775875:35776026:1 gene:ENSG00000201542 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 35775875	 35776026	+	ENSG00000201542	ENST00000364672	NA	NA	ZMYM4	NA	chr1:35765875-35786026	inner
CUST_29386_PI429285431	0.8953862	A	1.0331395	A	0.908933530257205	0	lncRNA	31138-1_{1..289}	n332688|AB084377|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061422|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061422|-1.4931900|-0.1523077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332688|AB084377|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061422|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061422|-1.4931900|-0.1523077	chr2	108602980	108603268	+	NA	NA	NA	NA	SLC5A7	NA	chr2:108602995-108614611	inner
CUST_45774_PI429285431	6.507753	P	5.2287865	P	2.42665077196745	0	lncRNA	50119-1_{1..2108}	"gi|260099728|ref|NR_028500.1| Homo sapiens lactate dehydrogenase A (LDHA), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|260099728|ref|NR_028500.1| Homo sapiens lactate dehydrogenase A (LDHA), transcript variant 6, non-coding RNA"	Chr11	 18415936	 18418043	+	3939	NR_028500.1	NA	NA	NA	NA	NA	inter
CUST_32122_PI429285431	0.89459527	A	0.8873795	A	1.00501411946481	0	lncRNA	33823-1_{1..849}	n338688|BC015852|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1105|NULL|-1.1361400|-0.3196325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338688|BC015852|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1105|NULL|-1.1361400|-0.3196325	chr2	 18728654	 18729502	-	NA	NA	NA	NA	NT5C1B-RDH14	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70chr2:18735989-18739470"	NA	inter
CUST_12542_PI429285431	1.863702	A	1.2118587	A	1.5711743691352	0	lncRNA	14153-1_{1..391}	lnc-KLHL31-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL31-1:9	chr6	 53437998	 53438388	-	lnc-KLHL31-1	lnc-KLHL31-1:9	XLOC_005747	linc-GCLC	NA	NA	NA	inter
CUST_4920_PI429285431	0.8883829	A	0.8899467	A	0.998916643693659	0	lncRNA	4863-1_{1..448}	"transcript_id ""ENST00000557709.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557709.1"" | genecode_v17"	chr14	 83484545	 83484992	-	ENSG00000258426.1	ENST00000557709.1	RP11-452D21.1	RP11-452D21.1-001	NA	NA	NA	inter
CUST_49690_PI429285431	2.8299918	A	3.7246618	P	0.537870212821822	0	lncRNA	53467-1_{1..1118}	hg19_lincRNAsTranscripts_TCONS_l2_00025623 range=chr7:5873158-5894069 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025623 range=chr7:5873158-5894069 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  5873158	  5874275	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27410_PI429285431	3.1003397	P	3.2598915	A	0.895303170279711	0	lncRNA	28974-1_{1..470}	n324575|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039976|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039976|-1.1157800|-0.1689294	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324575|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039976|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039976|-1.1157800|-0.1689294	chr6	 19838636	 19839105	-	NA	NA	NA	NA	ID4	"hg19_refFlat_ID4:range=chr6:19837986-198388595'pad=0,hg19_refFlat_ID4:range=chr6:19837986-198388595'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30chr6:19837617-19840915"	NA	inner
CUST_18606_PI429285431	1.2718078	A	1.6937243	A	0.746432392255219	0	lncRNA	20313-1_{1..1097}	lnc-CD200-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD200-1:1	chr3	112051033	112052129	+	lnc-CD200-1	lnc-CD200-1:1	ENSG00000239482	RP11-90K6.1	CD200	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10chr3:112051916-112061638"	NA	inter
LNCA_21_P0007886	0.91397977	A	0.90072024	A	1.00923317098148	0	lncRNA	TCONS_00021389	NA	NA	NA	NA	XLOC_010167	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010167), lincRNA [TCONS_00021389]"	chr12:98897547-98887213	hs|12q23.1	Agilent_HUMAN_G3V2	TCONS_00021389	TCONS_00021389	chr12	 98887213	 98897547	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009495	3.8652816	P	3.1659176	P	1.62378880124035	0	lncRNA	THC2659942	NA	NA	NA	NA	XLOC_012709	NA	NA	THC2659942	NA	"BROAD Institute lincRNA (XLOC_012709), lincRNA [TCONS_00026638]"	chr18:068019615-068019674	hs|18q22.2	Agilent_HUMAN_G3V2	THC2659942	THC2659942	chr18	 68019615	 68019674	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24456_PI429285431	2.6747108	A	2.971759	A	0.813915991931864	0	lncRNA	26009-1_{1..604}	lnc-JOSD1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JOSD1-1:4	chr22	 39065693	 39066296	-	lnc-JOSD1-1	lnc-JOSD1-1:4	ENSG00000228274.1	RP3-508I15.9	CBY1	"hg19_refFlat_CBY1:range=chr22:39064060-390692415'pad=0,hg19_refFlat_CBY1:range=chr22:39064060-390692415'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CBY1:range=chr22:39061600-390692415'pad=0,hg19_refFlat_CBY1:range=chr22:39061600-390692415'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00chr22:39055693-39069855"	NA	inner
CUST_40294_PI429285431	0.88710034	A	0.88428354	A	1.00195436426342	0	lncRNA	41098-1_{1..939}	n408245|NR_028412|lncRNA|Homosapiens||RefGeneNoncode|NR_028412||0.5010900|-0.1979190	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408245|NR_028412|lncRNA|Homosapiens||RefGeneNoncode|NR_028412||0.5010900|-0.1979190	chr19	 45430059	 45430997	+	NA	NA	NA	NA	APOC1	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-61.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40chr19:45420059-45422606"	NA	inter
CUST_52107_PI429285431	4.16043	P	4.676137	P	0.699450079747565	0	lncRNA	55632-1_{1..913}	hg19_lincRNAsTranscripts_TCONS_l2_00017870 range=chr22:18762459-18769835 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017870 range=chr22:18762459-18769835 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 18762459	 18763371	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28957_PI429285431	0.90913033	A	0.9125194	A	0.99765363271801	0	lncRNA	30677-1_{1..475}	n326386|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099630|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099630|-0.6883530|-0.2188408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326386|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099630|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099630|-0.6883530|-0.2188408	chr1	147551268	147551742	+	NA	NA	NA	NA	NBPF24	"hg19_refFlat_RNF115:range=chr1:145611240-1456882205'pad=0,hg19_refFlat_RNF115:range=chr1:145611240-1456882205'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80chr1:147552869-147563599"	NA	inter
CUST_36357_PI429285431	0.8978435	A	0.90259147	A	0.996714367523931	0	lncRNA	37580-1_{1..2858}	n344877|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_426|NULL|-1.3044800|-0.2814974	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344877|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_426|NULL|-1.3044800|-0.2814974	chr6	129844770	129847627	-	NA	NA	NA	NA	LAMA2	NA	chr6:129834770-129837711	inter
LNCA_21_P0005073	0.91601855	A	0.9032097	A	1.00891794832067	0	lncRNA	TCONS_00012339	NA	NA	NA	NA	XLOC_005889	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005889), lincRNA [TCONS_00012339]"	chr6:156135339-156135280	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_00012339	TCONS_00012339	chr6	156135280	156135339	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19942_PI429285431	6.436514	P	6.8550625	P	0.748176988988126	0	lncRNA	21597-1_{1..524}	lnc-C1orf123-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf123-1:1	chr1	 53679013	 53679536	-	lnc-C1orf123-1	lnc-C1orf123-1:1	ENSG00000236723.1	RP5-1024G6.2	CPT2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CPT2:range=chr1:53662616-536792675'pad=0,hg19_refFlat_CPT2:range=chr1:53662616-536792675'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60chr1:53669013-53679869"	NA	inner
CUST_251_PI429201921	0.9381739	A	2.529042	A	0.331971639084847	0	lncRNA	189-1_{1..3000}	TC0Y000329.hg.1	TCONS_l2_00031052-XLOC_l2_015954 // Broad TUCP // linc-KDM5D-3 chrY:-:23557033-23563448 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:23557033-23563448	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031052-XLOC_l2_015954	linc-KDM5D-3	chrY	 23557033	 23563448	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20252_PI429285431	6.782068	P	6.744725	P	1.02622210010961	0	lncRNA	21895-1_{1..920}	lnc-TRPV2-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRPV2-1:14	chr17	 16344388	 16345307	+	lnc-TRPV2-1	lnc-TRPV2-1:14	ENSG00000175061.10	C17orf76-AS1	C17orf76	NA	chr17:16345328-16354523	inter
CUST_4860_PI429285431	0.9027893	A	0.9963894	A	0.937181187710763	0	lncRNA	4803-1_{1..1184}	"transcript_id ""ENST00000555934.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555934.1"" | genecode_v17"	chr14	 62593962	 62595145	+	ENSG00000186369.5	ENST00000555934.1	LINC00643	LINC00643-001	NA	NA	NA	inter
CUST_1400_PI429285431	0.9097337	A	0.9116086	A	0.998701262441705	0	lncRNA	1389-1_{1..695}	"transcript_id ""ENST00000462219.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000462219.1"" | genecode_v17"	chr3	 94657016	 94657710	+	ENSG00000239589.1	ENST00000462219.1	RP11-118N24.3	RP11-118N24.3-005	NA	NA	NA	inter
CUST_49518_PI429285431	0.8963735	A	0.8941225	A	1.00156149216471	0	lncRNA	53310-1_{1..1229}	hg19_lincRNAsTranscripts_TCONS_l2_00024693 range=chr6:29675362-29678236 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024693 range=chr6:29675362-29678236 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 29675362	 29676590	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19348_PI429285431	0.9093278	A	0.9063778	A	1.00204687617948	0	lncRNA	21014-1_{1..599}	lnc-LIMS3-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIMS3-2:10	chr2	111020228	111020826	+	lnc-LIMS3-2	lnc-LIMS3-2:10	ENSG00000261760.1	RP11-1223D19.1	LOC100287119	NA	chr2:111025028-111030664	inter
CUST_48591_PI429285431	1.1991808	A	1.0097067	A	1.1403479535002	0	lncRNA	52438-1_{1..731}	hg19_lincRNAsTranscripts_TCONS_l2_00013556 range=chr2:33825775-33881288 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013556 range=chr2:33825775-33881288 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 33825775	 33826505	+	NA	NA	NA	NA	FAM98A	NA	chr2:33815775-33824362	inter
CUST_33283_PI429285431	5.084	P	4.176527	P	1.87575707523088	0	lncRNA	34866-1_{1..1068}	n339993|BC041955|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2446|NULL|-0.0688674|-0.3344358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339993|BC041955|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2446|NULL|-0.0688674|-0.3344358	chr10	 21781586	 21782653	-	NA	NA	NA	NA	C10orf114	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10chr10:21783421-21786213"	NA	inter
CUST_22240_PI429285431	6.521571	P	6.6279287	P	0.928930327875131	0	lncRNA	23841-1_{1..1970}	lnc-MFNG-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MFNG-2:7	chr22	 37780890	 37782859	-	lnc-MFNG-2	lnc-MFNG-2:7	ENSG00000243902.1	RP1-63G5.5	ELFN2	NA	chr22:37770890-37791323	inner
CUST_3774_PI429285431	3.9756799	P	5.1006966	P	0.458496714216348	0	lncRNA	3742-1_{1..382}	"transcript_id ""ENST00000442188.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442188.1"" | genecode_v17"	chr10	103070775	103071156	+	ENSG00000225208.1	ENST00000442188.1	RP11-107I14.2	RP11-107I14.2-001	NA	NA	NA	inter
CUST_34170_PI429285431	0.9127381	A	0.8978243	A	1.01039107453693	0	lncRNA	35687-1_{1..910}	n341016|BC031305|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3482|NULL|3.0372900|-0.2602452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n341016|BC031305|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3482|NULL|3.0372900|-0.2602452	chr11	 43590855	 43591764	+	NA	NA	NA	NA	LOC100131381	NA	chr11:43600529-43601945	inter
CUST_19743_PI429285431	9.374454	P	9.6635	P	0.818443085304985	0	lncRNA	21401-1_{1..598}	lnc-MRPL46.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPL46.1-1:1	chr15	 89054663	 89055260	-	lnc-MRPL46.1-1	lnc-MRPL46.1-1:1	ENSG00000173867.7	MRPL46	DET1	NA	chr15:89055714-89064752	inter
CUST_21579_PI429285431	2.3708491	A	1.0999309	A	2.41315101125307	0	lncRNA	23193-1_{1..510}	lnc-LEO1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LEO1-2:1	chr15	 52201786	 52202295	-	lnc-LEO1-2	lnc-LEO1-2:1	ENSG00000259185.1	RP11-56B16.4	TMOD3	NA	chr15:52191786-52204335	inner
CUST_1115_PI429285431	1.7289062	A	0.9193054	A	1.75272638850296	0	lncRNA	1104-1_{1..742}	"transcript_id ""ENST00000602041.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602041.1"" | genecode_v17"	chr2	145780795	145781536	+	ENSG00000226674.3	ENST00000602041.1	AC074093.1	AC074093.1-014	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20"	NA	inter
CUST_30750_PI429285431	0.9047015	A	2.151849	A	0.421280341180804	0	lncRNA	32535-1_{1..429}	n336568|Z11950|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326412|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326412|2.4808700|-0.0772132	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336568|Z11950|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326412|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326412|2.4808700|-0.0772132	chr14	107198949	107199377	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27437_PI429285431	0.9296754	A	0.9162204	A	1.00936992072226	0	lncRNA	29003-1_{1..477}	n324608|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039726|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039726|-1.0806300|-0.3365054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324608|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039726|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039726|-1.0806300|-0.3365054	chr6	  4100168	  4100644	+	NA	NA	NA	NA	C6orf201	NA	chr6:4090168-4111132	inner
CUST_34387_PI429285431	8.740471	P	9.861691	P	0.459704916233938	0	lncRNA	35872-1_{1..3000}	n341258|BC065566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3726|NULL|6.0084400|-0.0869869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341258|BC065566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3726|NULL|6.0084400|-0.0869869	chr7	 73442487	 73445486	+	NA	NA	NA	NA	ELN	NA	chr7:73442427-73484237	inner
CUST_18079_PI429285431	4.1333237	P	5.314436	P	0.441011352749864	0	lncRNA	19814-1_{1..396}	lnc-MAP3K9-3:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP3K9-3:11	chr14	 71777275	 71777670	-	lnc-MAP3K9-3	lnc-MAP3K9-3:11	XLOC_011064	linc-MAP3K9-1	NA	NA	NA	inter
CUST_51631_PI429285431	1.243556	A	0.91205657	A	1.25832049994508	0	lncRNA	55201-1_{1..1740}	hg19_lincRNAsTranscripts_TCONS_l2_00010787 range=chr17:42004987-42016280 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010787 range=chr17:42004987-42016280 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 42004987	 42006726	+	NA	NA	NA	NA	PPY	NA	chr17:42018172-42019833	inter
CUST_34911_PI429285431	8.898977	P	7.7559967	P	2.20836753886276	0	lncRNA	36334-1_{1..2213}	n341828|AK097936|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4307|NULL|-1.0302800|-0.3036783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341828|AK097936|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4307|NULL|-1.0302800|-0.3036783	chr12	 12626617	 12628829	+	NA	NA	NA	NA	LOH12CR1	NA	chr12:12616617-12619838	inner
CUST_14518_PI429285431	0.9176105	A	0.91084087	A	1.00470337626165	0	lncRNA	16184-1_{1..660}	lnc-CDYL2-6:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDYL2-6:7	chr16	 80573869	 80574528	-	lnc-CDYL2-6	lnc-CDYL2-6:7	XLOC_012019	linc-MAF-2	DYNLRB2	NA	chr16:80574854-80584385	inter
CUST_41206_PI429285431	0.91026545	A	0.90321124	A	1.00490157940237	0	lncRNA	42086-1_{1..115}	ENST00000384857 ncrna:miRNA chromosome:GRCh37:X:146318431:146318545:-1 gene:ENSG00000207589 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384857 ncrna:miRNA chromosome:GRCh37:X:146318431:146318545:-1 gene:ENSG00000207589 gene_biotype:miRNA transcript_biotype:miRNA	chrX	146318431	146318545	-	ENSG00000207589	ENST00000384857	NA	NA	NA	NA	NA	inter
CUST_41044_PI429285431	3.825511	P	3.9020305	P	0.948342764941166	0	lncRNA	41704-1_{1..616}	n411711|NR_044996_7|lncRNA|Homosapiens||RefGeneNoncode|NR_044996_7||-1.0266600|-0.1497913	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411711|NR_044996_7|lncRNA|Homosapiens||RefGeneNoncode|NR_044996_7||-1.0266600|-0.1497913	chr6	  3737843	  3738458	+	NA	NA	NA	NA	C6orf145	NA	chr6:3727843-3751026	inner
CUST_11473_PI429285431	1.4580048	A	0.8932606	A	1.47912522666852	0	lncRNA	13039-1_{1..578}	lnc-PAFAH1B1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAFAH1B1-3:1	chr17	  2472209	  2472786	+	lnc-PAFAH1B1-3	lnc-PAFAH1B1-3:1	XLOC_012077	linc-PAFAH1B1	NA	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
CUST_48417_PI429285431	0.91820645	A	1.0828207	A	0.892167036513829	0	lncRNA	52269-1_{1..904}	hg19_lincRNAsTranscripts_TCONS_l2_00000571 range=chr1:147555399-147564383 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000571 range=chr1:147555399-147564383 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	147555399	147556302	+	NA	NA	NA	NA	NBPF24	NA	chr1:147552869-147574383	inter
CUST_34641_PI429285431	0.9303593	A	0.9142619	A	1.01122034859638	0	lncRNA	36094-2_{3001..3765}	n341540|BX641068|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4010|NULL|-1.1365000|-0.3745857	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341540|BX641068|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4010|NULL|-1.1365000|-0.3745857	chr8	 79521186	 79521950	+	NA	NA	NA	NA	PKIA	NA	chr8:79508186-79517502	inter
CUST_35708_PI429285431	1.5502911	A	0.920087	A	1.54778394512239	0	lncRNA	37128-1_{1..1250}	n342875|AL833059|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5380|NULL|-1.0761800|-0.3958591	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342875|AL833059|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5380|NULL|-1.0761800|-0.3958591	chr9	115390749	115391998	+	NA	NA	NA	NA	KIAA1958	NA	chr9:115380749-115401983	inner
CUST_36240_PI429285431	7.6931276	P	6.405694	P	2.44093452980965	0	lncRNA	37487-1_{1..457}	n344779|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_328|NULL|-1.3341400|-0.2842073	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n344779|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_328|NULL|-1.3341400|-0.2842073	chr18	  3466289	  3466745	+	NA	NA	NA	NA	TGIF1	NA	chr18:3456289-3458409	inter
CUST_35227_PI429285431	10.870088	P	9.927032	P	1.92259648329973	0	lncRNA	36627-1_{1..512}	n342217|CR621898|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4707|NULL|-1.0817700|-0.4291540	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342217|CR621898|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4707|NULL|-1.0817700|-0.4291540	chrX	 52861123	 52861634	-	NA	NA	NA	NA	XAGE3	NA	chrX:52861893-52871635	inter
CUST_15770_PI429285431	0.9252169	A	0.9118943	A	1.00927729238319	0	lncRNA	17458-1_{1..1409}	lnc-SPAG6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPAG6-1:1	chr10	 22761467	 22762875	+	lnc-SPAG6-1	lnc-SPAG6-1:1	XLOC_008411	linc-ARMC3-1	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60"	NA	inter
CUST_5581_PI429285431	0.9166763	A	0.9181543	A	0.998976053058935	0	lncRNA	5510-1_{1..861}	"transcript_id ""ENST00000561657.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561657.1"" | genecode_v17"	chr16	 64276512	 64277372	-	ENSG00000261028.1	ENST00000561657.1	AC012322.1	AC012322.1-001	NA	NA	NA	inter
CUST_47342_PI429285431	10.051989	P	10.06271	P	0.99259631240456	0	lncRNA	51395-1_{1..3000}	"gi|237681205|ref|NR_027686.1| Homo sapiens long intergenic non-protein coding RNA 176 (LINC00176), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|237681205|ref|NR_027686.1| Homo sapiens long intergenic non-protein coding RNA 176 (LINC00176), transcript variant 1, non-coding RNA"	Chr20	 62665697	 62668696	+	284739	NR_027686.1	NA	NA	NA	NA	NA	inter
CUST_1030_PI429285431	8.702827	P	8.423557	P	1.2135806603007	0	lncRNA	1020-1_{1..757}	"transcript_id ""ENST00000455309.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455309.1"" | genecode_v17"	chr2	112248850	112249606	+	ENSG00000240350.1	ENST00000455309.1	AC017002.1	AC017002.1-001	NA	NA	NA	inter
CUST_32530_PI429285431	5.9072766	P	5.8736234	P	1.02360081416493	0	lncRNA	34196-2_{3001..5369}	n339137|AL122122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1567|NULL|0.1839090|-0.2573023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339137|AL122122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1567|NULL|0.1839090|-0.2573023	chr2	217695809	217698177	-	NA	NA	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.20"	NA	inter
LNCA_21_P0004054	2.6887484	A	2.0823562	A	1.52244720539851	0	lncRNA	ENST00000511422	NA	NA	NA	NA	XLOC_004528	NA	ENST00000511422	NA	NA	"BROAD Institute lincRNA (XLOC_004528), lincRNA [TCONS_00009497]"	chr5:120126414-120126473	hs|5q23.1	Agilent_HUMAN_G3V2	ENST00000511422	ENST00000511422	chr5	120126414	120126473	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001536	4.170567	P	3.8657837	P	1.23523308501369	0	lncRNA	TCONS_00001565	NA	NA	NA	NA	XLOC_000905	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000905), lincRNA [TCONS_00001565]"	chr1:88994650-88994591	hs|1p22.2	Agilent_HUMAN_G3V2	TCONS_00001565	TCONS_00001565	chr1	 88994591	 88994650	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2342_PI429285431	1.1819013	A	1.0901413	A	1.06566944153689	0	lncRNA	2334-1_{1..285}	"transcript_id ""ENST00000519703.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519703.1"" | genecode_v17"	chr5	123649342	123649626	-	ENSG00000253807.1	ENST00000519703.1	RP11-93O7.5	RP11-93O7.5-002	NA	NA	NA	inter
CUST_42305_PI429285431	8.226385	P	8.779905	P	0.6813556738995	0	lncRNA	44929-1_{1..135}	ENST00000458806 ncrna:snoRNA chromosome:GRCh37:1:193026411:193026545:-1 gene:ENSG00000238754 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000458806 ncrna:snoRNA chromosome:GRCh37:1:193026411:193026545:-1 gene:ENSG00000238754 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	193026411	193026545	-	ENSG00000238754	ENST00000458806	NA	NA	TROVE2	NA	chr1:193028552-193036545	inter
CUST_1375_PI429285431	1.1596475	A	1.0551877	A	1.07509175975863	0	lncRNA	1363-1_{1..789}	"transcript_id ""ENST00000470712.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000470712.1"" | genecode_v17"	chr3	 72108973	 72109761	-	ENSG00000241163.2	ENST00000470712.1	RP11-398A8.3	RP11-398A8.3-003	NA	NA	NA	inter
CUST_43883_PI429285431	13.037676	P	12.76533	P	1.20777021498673	0	lncRNA	48602-1_{1..664}	"gi|209413711|ref|NR_024205.1| Homo sapiens long intergenic non-protein coding RNA 152 (LINC00152), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|209413711|ref|NR_024205.1| Homo sapiens long intergenic non-protein coding RNA 152 (LINC00152), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_024205.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013742	3.7219863	P	4.1393013	P	0.748816951648617	0	lncRNA	ENST00000423523	NA	NA	NA	NA	XLOC_l2_015336	NA	ENST00000423523	THC2779909	NA	"BROAD Institute lincRNA (XLOC_l2_015336), lincRNA [TCONS_l2_00030058]"	chr9:110182624-110182565	hs|9q31.2	Agilent_HUMAN_G3V2	ENST00000423523	ENST00000423523	chr9	110182565	110182624	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27565_PI429285431	1.756556	A	1.168069	A	1.50366897492914	0	lncRNA	29143-1_{1..2379}	n324754|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331424|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331424|-0.0432342|-0.3035385	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324754|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331424|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331424|-0.0432342|-0.3035385	chr22	 16892150	 16894528	+	NA	NA	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20"	NA	inter
CUST_5669_PI429285431	1.0676074	A	0.9223479	A	1.10592956085366	0	lncRNA	5595-1_{1..3000}	"transcript_id ""ENST00000599841.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599841.1"" | genecode_v17"	chr16	 86226399	 86229398	-	ENSG00000268505.1	ENST00000599841.1	RP11-805I24.3	RP11-805I24.3-001	NA	NA	NA	inter
LNCA_21_P0005509	0.92270744	A	0.92353666	A	0.999425393644435	0	lncRNA	TCONS_00013875	NA	NA	NA	NA	XLOC_006511	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006511), lincRNA [TCONS_00013875]"	chr7:82323850-82323791	hs|7q21.11	Agilent_HUMAN_G3V2	TCONS_00013875	TCONS_00013875	chr7	 82323791	 82323850	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28330_PI429285431	0.89684093	A	0.8994077	A	0.998222432359433	0	lncRNA	29975-1_{1..698}	n325635|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045751|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045751|-1.1885400|-0.2473632	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325635|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045751|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045751|-1.1885400|-0.2473632	chr13	108732321	108733018	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50"	NA	inter
CUST_19373_PI429285431	3.7764459	P	3.6679657	P	1.07809192744775	0	lncRNA	21035-1_{1..571}	lnc-SP110-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SP110-1:1	chr2	231444620	231445190	-	lnc-SP110-1	lnc-SP110-1:1	ENSG00000235419.1	AC010149.4	NA	NA	NA	inter
CUST_21200_PI429285431	0.92656296	A	1.5128028	A	0.666076671811413	0	lncRNA	22825-1_{1..528}	lnc-ADA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADA-1:1	chr20	 43374606	 43375133	-	lnc-ADA-1	lnc-ADA-1:1	ENSG00000244558.1	RP11-445H22.4	RIMS4	"hg19_refFlat_KCNK15:range=chr20:43374552-433794795'pad=0,hg19_refFlat_KCNK15:range=chr20:43374552-433794795'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.30chr20:43380445-43384662"	NA	inner
CUST_48053_PI429285431	0.92227405	A	0.909611	A	1.00881599135824	0	lncRNA	51931-1_{1..3000}	"gi|410170005|ref|XR_172441.1| PREDICTED: Homo sapiens chromosome 1 open reading frame 81 (C1orf81), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170005|ref|XR_172441.1| PREDICTED: Homo sapiens chromosome 1 open reading frame 81 (C1orf81), misc_RNA"	NA	NA	NA	NA	NA	XR_172441.1	NA	NA	NA	NA	NA	Unknown
CUST_35224_PI429285431	0.9116303	A	1.2241545	A	0.805231658775235	0	lncRNA	36624-1_{1..998}	n342214|BC016363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4704|NULL|-1.2216600|-0.2764585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n342214|BC016363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4704|NULL|-1.2216600|-0.2764585	chr15	 30909205	 30910202	-	NA	NA	NA	NA	GOLGA8H	NA	chr15:30899205-30906859	inter
CUST_8020_PI429285431	3.0049756	A	3.6288655	P	0.648918904153571	0	lncRNA	9631-2_{3001..6000}	lnc-CDS1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CDS1-2:1	chr4	 85930160	 85933159	+	lnc-CDS1-2	lnc-CDS1-2:1	ENSG00000180769	NCRNA00247	NA	NA	NA	inter
CUST_21198_PI429285431	0.9126811	A	1.098388	A	0.879218165995806	0	lncRNA	22823-1_{1..753}	lnc-SAYSD1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAYSD1-1:3	chr6	 38899073	 38899825	-	lnc-SAYSD1-1	lnc-SAYSD1-1:3	ENSG00000231150.1	RP1-207H1.3	DNAH8	"hg19_refFlat_DNAH8:range=chr6:38690586-389981685'pad=0,hg19_refFlat_DNAH8:range=chr6:38690586-389981685'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90chr6:38889073-38909147"	NA	inner
CUST_16094_PI429285431	1.394881	A	1.8832343	A	0.712838271126362	0	lncRNA	17799-1_{1..419}	lnc-CST8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CST8-1:1	chr20	 23487412	 23487830	+	lnc-CST8-1	lnc-CST8-1:1	XLOC_013490	linc-TMEM90B-6	NA	NA	NA	inter
CUST_14941_PI429285431	0.903638	A	0.90332544	A	1.00021667355308	0	lncRNA	16605-1_{1..267}	lnc-DAOA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DAOA-1:1	chr13	106066385	106066651	+	lnc-DAOA-1	lnc-DAOA-1:1	XLOC_010486	linc-DAOA-1	NA	NA	NA	inter
CUST_51122_PI429285431	8.024576	P	7.009986	P	2.02032865348565	0	lncRNA	54756-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00007025 range=chr13:114053727-114064046 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007025 range=chr13:114053727-114064046 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	114056727	114059726	+	NA	NA	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20"	NA	inter
CUST_3004_PI429285431	1.5178276	A	0.9010647	A	1.53343062700575	0	lncRNA	2983-1_{1..687}	"transcript_id ""ENST00000521842.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521842.1"" | genecode_v17"	chr8	  9237490	  9238176	-	ENSG00000254237.1	ENST00000521842.1	RP11-115J16.2	RP11-115J16.2-003	NA	NA	NA	inter
CUST_12159_PI429285431	0.9179972	A	0.9126581	A	1.00370763846119	0	lncRNA	13757-1_{1..613}	lnc-KIF20B-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIF20B-4:5	chr10	 91674393	 91675005	+	lnc-KIF20B-4	lnc-KIF20B-4:5	XLOC_008554	linc-RPP30-5	NA	NA	NA	inter
CUST_39969_PI429285431	5.241526	P	4.348859	P	1.85660511725191	0	lncRNA	40839-1_{1..1389}	n407041|NR_024539|lncRNA|Homosapiens||RefGeneNoncode|NR_024539||2.1923300|-0.2703116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407041|NR_024539|lncRNA|Homosapiens||RefGeneNoncode|NR_024539||2.1923300|-0.2703116	chr6	105605774	105607162	-	NA	NA	NA	NA	POPDC3	NA	chr6:105605775-105627858	inner
CUST_17311_PI429285431	1.3573939	A	1.4847891	A	0.915482872226998	0	lncRNA	19029-1_{1..377}	lnc-GDAP2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GDAP2-1:3	chr1	118148345	118148721	-	lnc-GDAP2-1	lnc-GDAP2-1:3	XLOC_000980	linc-VTCN1-2	FAM46C	NA	chr1:118148604-118158443	inter
CUST_14524_PI429285431	1.9112071	A	1.3652142	A	1.46002482535099	0	lncRNA	16192-1_{1..1487}	lnc-MKI67IP-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MKI67IP-2:2	chr2	123565895	123567381	-	lnc-MKI67IP-2	lnc-MKI67IP-2:2	XLOC_002302	linc-MKI67IP-2	NA	NA	NA	inter
CUST_10117_PI429285431	4.9349246	P	5.395389	P	0.726752281224537	0	lncRNA	11642-1_{1..209}	lnc-POTEB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POTEB-2:1	chr15	 21913679	 21913887	-	lnc-POTEB-2	lnc-POTEB-2:1	XLOC_011393	linc-POTEB-3	NA	NA	NA	inter
CUST_28536_PI429285431	0.9242855	A	0.9280391	A	0.997401584484029	0	lncRNA	30208-1_{1..427}	n325885|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050374|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050374|-1.1675200|-0.2930520	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325885|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050374|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050374|-1.1675200|-0.2930520	chr10	113099686	113100112	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32702_PI429285431	0.90584695	A	1.9180853	A	0.495776450566939	0	lncRNA	34346-1_{1..2156}	n339333|AK055272|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1765|NULL|-0.3649390|-0.1938178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n339333|AK055272|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1765|NULL|-0.3649390|-0.1938178	chr16	 89112579	 89114734	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9563_PI429285431	1.3686316	A	0.9127744	A	1.37159751920485	0	lncRNA	11078-1_{1..1011}	lnc-FAM174A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM174A-1:2	chr5	 99755954	 99756964	+	lnc-FAM174A-1	lnc-FAM174A-1:2	XLOC_004490	linc-FAM174A-1	NA	NA	NA	inter
CUST_46155_PI429285431	4.167227	P	4.5613327	P	0.760960936074343	0	lncRNA	50404-1_{1..2449}	"gi|301500653|ref|NR_036435.1| Homo sapiens arginine/serine-rich coiled-coil 2 (RSRC2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|301500653|ref|NR_036435.1| Homo sapiens arginine/serine-rich coiled-coil 2 (RSRC2), transcript variant 4, non-coding RNA"	Chr12	122989190	122991638	-	65117	NR_036435.1	NA	NA	NA	NA	NA	inter
CUST_51210_PI429285431	3.8245146	P	4.4464016	P	0.649820426829709	0	lncRNA	54828-1_{1..2034}	hg19_lincRNAsTranscripts_TCONS_l2_00009246 range=chr15:85057092-85114072 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009246 range=chr15:85057092-85114072 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 85057092	 85059125	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00"	NA	inter
LNCA_33_P3288694	8.802446	P	8.451984	P	1.27496885032385	0	lncRNA	XR_108637	XR_108637	XR_108637	100131607	NA	LOC100131607	uncharacterized LOC100131607	NA	THC2683565	NA	"PREDICTED: Homo sapiens hypothetical LOC100131607, transcript variant 2 (LOC100131607), miscRNA [XR_108637]"	chr6:34665191-34665247	hs|6p21.31	Agilent_HUMAN_G3V2	XR_108637	XR_108637	chr6	 34665191	 34665247	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14745_PI429285431	0.9099196	A	2.0570319	A	0.451528106566702	0	lncRNA	16409-1_{1..778}	lnc-TMEM98-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM98-1:4	chr17	 31276776	 31277553	+	lnc-TMEM98-1	lnc-TMEM98-1:4	XLOC_012171	linc-SPACA3	TMEM98	NA	chr17:31266776-31268667	inter
CUST_31824_PI429285431	8.214734	P	8.082419	P	1.09605105360333	0	lncRNA	33560-1_{1..2131}	n338371|AK097298|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|766|NULL|-1.1339100|-0.2532828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n338371|AK097298|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|766|NULL|-1.1339100|-0.2532828	chr14	 71607841	 71609971	-	NA	NA	NA	NA	NA	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.94;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80"	NA	inter
CUST_21548_PI429285431	0.9088629	A	0.9536832	A	0.969410557787086	0	lncRNA	23165-1_{1..871}	lnc-SUPT6H-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SUPT6H-2:2	chr17	 26933314	 26934184	+	lnc-SUPT6H-2	lnc-SUPT6H-2:2	ENSG00000227543.3	SPAG5-AS1	SPAG5	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50chr17:26923314-26926056"	NA	inter
CUST_23986_PI429285431	1.9580051	A	2.5592134	A	0.659201623158489	0	lncRNA	25541-1_{1..934}	lnc-WNT1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WNT1-2:3	chr12	 49412019	 49412952	+	lnc-WNT1-2	lnc-WNT1-2:3	ENSG00000257913.1	RP11-386G11.5	MLL2	"hg19_refFlat_DDN:range=chr12:49390523-493930705'pad=0,hg19_refFlat_DDN:range=chr12:49390523-493930705'pad=0 3'pad=0 strand=- repeatMasking=none,-110.60chr12:49412758-49422563"	NA	inner
CUST_26198_PI429285431	0.9255327	A	0.9158211	A	1.00675427608839	0	lncRNA	27709-1_{1..465}	lnc-LAMP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LAMP1-1:2	chr13	114015874	114016338	+	lnc-LAMP1-1	lnc-LAMP1-1:2	ENSG00000225083.1	GRTP1-AS1	GRTP1	NA	chr13:114005874-114018463	inner
CUST_11038_PI429285431	5.6844482	P	6.332081	P	0.638326833012144	0	lncRNA	12584-1_{1..1031}	lnc-WASL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WASL-1:1	chr7	123319357	123320387	-	lnc-WASL-1	lnc-WASL-1:1	XLOC_006588	linc-NDUFA5-2	WASL	NA	chr7:123321997-123329730	inter
CUST_13442_PI429285431	1.5739492	A	1.1421258	A	1.34893740108614	0	lncRNA	15080-1_{1..415}	lnc-PFKP-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PFKP-4:1	chr10	  3027098	  3027512	+	lnc-PFKP-4	lnc-PFKP-4:1	XLOC_008343	linc-PFKP-2	NA	NA	NA	inter
CUST_28924_PI429285431	4.7859697	P	5.1008368	P	0.803925044312635	0	lncRNA	30641-1_{1..562}	n326349|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000082879|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000082879|-0.6449320|-0.2026538	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326349|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000082879|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000082879|-0.6449320|-0.2026538	chr1	165131571	165132132	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13767_PI429285431	6.7141986	P	6.8782754	P	0.892499459156806	0	lncRNA	15410-1_{1..300}	lnc-ZMAT4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZMAT4-2:1	chr8	 40810758	 40811057	-	lnc-ZMAT4-2	lnc-ZMAT4-2:1	XLOC_007066	linc-ZMAT4-2	NA	NA	NA	inter
CUST_452_PI429285431	0.9242731	A	0.9146964	A	1.00666014337244	0	lncRNA	444-1_{1..566}	"transcript_id ""ENST00000416894.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000416894.1"" | genecode_v17"	chr1	150488233	150488798	+	ENSG00000228126.1	ENST00000416894.1	LINC00568	LINC00568-001	TARS2	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.31chr1:150478233-150479756"	NA	inter
CUST_19396_PI429285431	1.7049206	A	1.6267688	A	1.05566478857114	0	lncRNA	21058-1_{1..542}	lnc-LYAR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-LYAR-1:1	chr4	  4483332	  4483873	-	lnc-LYAR-1	lnc-LYAR-1:1	ENSG00000248221.1	STX18-IT1	STX18	NA	chr4:4473332-4493427	inner
CUST_18258_PI429285431	1.0043172	A	0.91131014	A	1.06659100030908	0	lncRNA	19992-1_{1..1893}	lnc-PLD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLD1-2:1	chr3	171759280	171761172	-	lnc-PLD1-2	lnc-PLD1-2:1	ENSG00000228676	AC069259.1	FNDC3B	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80chr3:171757418-171770763"	NA	inner
CUST_36664_PI429285431	1.7768625	A	1.9799229	A	0.86870581507371	0	lncRNA	37854-1_{1..2202}	n345159|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_708|NULL|-1.3336700|-0.3583555	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345159|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_708|NULL|-1.3336700|-0.3583555	chr12	 68774078	 68776279	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002942	0.9175447	A	0.9040834	A	1.00937432847594	0	lncRNA	TCONS_00005987	NA	NA	NA	NA	XLOC_002614	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002614), lincRNA [TCONS_00005987]"	chr3:36312316-36312375	hs|3p22.3	Agilent_HUMAN_G3V2	TCONS_00005987	TCONS_00005987	chr3	 36312316	 36312375	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14228_PI429285431	1.0502005	A	0.9002734	A	1.10951340646242	0	lncRNA	15885-1_{1..868}	lnc-MLN-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MLN-1:6	chr6	 33860473	 33861340	-	lnc-MLN-1	lnc-MLN-1:6	XLOC_005689	linc-MLN	NA	NA	NA	inter
CUST_20845_PI429285431	7.9879913	P	8.034839	P	0.968049214888772	0	lncRNA	22476-1_{1..1838}	lnc-SULT1A3.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SULT1A3.1-1:3	chr16	 30215129	 30216966	+	lnc-SULT1A3.1-1	lnc-SULT1A3.1-1:3	ENSG00000213599.5	SULT1A3	SULT1A3	NA	chr16:30210549-30215650	inner
CUST_40997_PI429285431	1.1116257	A	1.2162702	A	0.930034087634517	0	lncRNA	41664-2_{3001..6000}	n411511|NR_039981|lncRNA|Homosapiens||RefGeneNoncode|NR_039981||-1.2098600|-0.3642356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411511|NR_039981|lncRNA|Homosapiens||RefGeneNoncode|NR_039981||-1.2098600|-0.3642356	chr7	104625193	104628192	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00"	NA	inter
CUST_47469_PI429285431	7.5424547	P	7.2857637	P	1.19473528608603	0	lncRNA	51493-2_{3001..3442}	"gi|221136789|ref|NR_024448.2| Homo sapiens glucuronidase, beta pseudogene 11 (GUSBP11), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|221136789|ref|NR_024448.2| Homo sapiens glucuronidase, beta pseudogene 11 (GUSBP11), non-coding RNA"	Chr22	 23983674	 23984115	-	91316	NR_024448.2	NA	NA	NA	"hg19_refFlat_RGL4:range=chr22:24034218-240410705'pad=0,hg19_refFlat_RGL4:range=chr22:24034218-240410705'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90"	NA	inter
CUST_11786_PI429285431	1.4960473	A	1.9674015	A	0.721287236491178	0	lncRNA	13367-1_{1..533}	lnc-CADM2-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CADM2-7:2	chr3	 81969843	 81970375	+	lnc-CADM2-7	lnc-CADM2-7:2	XLOC_002719	linc-CADM2-5	NA	NA	NA	inter
CUST_35292_PI429285431	0.925098	A	1.0073678	A	0.94457037932441	0	lncRNA	36695-1_{1..589}	n342312|AF085938|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4804|NULL|-1.3053000|-0.3884534	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342312|AF085938|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4804|NULL|-1.3053000|-0.3884534	chr14	 36194269	 36194857	+	NA	NA	NA	NA	RALGAPA1	"hg19_refFlat_RALGAPA1:range=chr14:36017737-362780415'pad=0,hg19_refFlat_RALGAPA1:range=chr14:36017737-362780415'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_RALGAPA1:range=chr14:36008748-362780415'pad=0,hg19_refFlat_RALGAPA1:range=chr14:36008748-362780415'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60chr14:36184269-36204855"	NA	inner
CUST_23598_PI429285431	5.946592	P	6.489115	P	0.686569179299906	0	lncRNA	25164-1_{1..110}	lnc-C11orf35-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C11orf35-1:1	chr11	   568089	   568198	-	lnc-C11orf35-1	lnc-C11orf35-1:1	ENSG00000254474.1	hsa-mir-210	C11orf35	NA	chr11:558089-560779	inter
CUST_49406_PI429285431	4.161972	P	4.4209433	P	0.835683583280848	0	lncRNA	53214-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00023256 range=chr5:175570064-175598935 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023256 range=chr5:175570064-175598935 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175573064	175576063	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20"	NA	inter
CUST_13915_PI429285431	0.9135732	A	0.9114478	A	1.0014743007319	0	lncRNA	15562-1_{1..234}	lnc-SEPP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEPP1-2:1	chr5	 42374369	 42374602	-	lnc-SEPP1-2	lnc-SEPP1-2:1	XLOC_004801	linc-OXCT1-2	NA	NA	NA	inter
CUST_25670_PI429285431	0.9122977	A	1.3683603	A	0.728973057842235	0	lncRNA	27199-1_{1..529}	lnc-SPRYD3-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPRYD3-1:8	chr12	 53412563	 53413091	-	lnc-SPRYD3-1	lnc-SPRYD3-1:8	ENSG00000257337.1	RP11-983P16.4	EIF4B	"hg19_refFlat_EIF4B:range=chr12:53400268-534340075'pad=0,hg19_refFlat_EIF4B:range=chr12:53400268-534340075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50chr12:53402563-53422743"	NA	inner
CUST_47521_PI429285431	10.959579	P	11.600962	P	0.641098083036835	0	lncRNA	51532-1_{1..1697}	"gi|397139774|ref|XR_158965.1| PREDICTED: Homo sapiens uncharacterized LOC100996460 (LOC100996460), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139774|ref|XR_158965.1| PREDICTED: Homo sapiens uncharacterized LOC100996460 (LOC100996460), misc_RNA"	NA	NA	NA	NA	NA	XR_158965.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90"	NA	Unknown
LNCA_21_P0012036	2.0217152	A	3.1859348	P	0.446205561333616	0	lncRNA	ENST00000419243	NA	BC035629	NA	Hs.549598	XLOC_l2_007706	NA	ENST00000419243	THC2606200	NA	"BROAD Institute lincRNA (XLOC_l2_007706), lincRNA [TCONS_l2_00015569]"	chr2:200495376-200495435	hs|2q33.1	Agilent_HUMAN_G3V2	ENST00000419243	ENST00000419243	chr2	200495376	200495435	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22624_PI429285431	7.5406857	P	7.089021	P	1.36761741592311	0	lncRNA	24210-1_{1..535}	lnc-SNX27-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNX27-1:1	chr1	151585667	151586201	+	lnc-SNX27-1	lnc-SNX27-1:1	ENSG00000250734.1	RP11-404E16.1	SNX27	NA	chr1:151584662-151595839	inner
CUST_33180_PI429285431	5.4941697	P	5.564577	P	0.952369088343986	0	lncRNA	34772-2_{3001..3826}	n339870|AK127251|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2318|NULL|-1.1543000|-0.2763575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339870|AK127251|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2318|NULL|-1.1543000|-0.2763575	chr18	 46094165	 46094990	+	NA	NA	NA	NA	CTIF	NA	chr18:46081165-46104713	inner
CUST_49322_PI429285431	6.4657006	P	6.3081512	P	1.11539089551282	0	lncRNA	53138-1_{1..274}	hg19_lincRNAsTranscripts_TCONS_l2_00022912 range=chr5:56067335-56068811 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022912 range=chr5:56067335-56068811 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 56067335	 56067608	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46446_PI429285431	2.920559	P	3.4861364	P	0.675684937615911	0	lncRNA	50653-1_{1..1415}	"gi|410170707|ref|XR_109176.4| PREDICTED: Homo sapiens uncharacterized LOC100507568 (LOC100507568), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410170707|ref|XR_109176.4| PREDICTED: Homo sapiens uncharacterized LOC100507568 (LOC100507568), misc_RNA"	NA	NA	NA	NA	NA	XR_109176.4	NA	NA	NA	NA	NA	Unknown
CUST_28499_PI429285431	3.9625237	P	4.1708107	P	0.865564358868364	0	lncRNA	30167-1_{1..2619}	n325842|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051101|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051101|0.2850030|-0.1100083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325842|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051101|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051101|0.2850030|-0.1100083	chr10	134607460	134610078	-	NA	NA	NA	NA	C10orf92	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70chr10:134621896-134638918"	NA	inner
CUST_6002_PI429285431	1.0455108	A	0.9069949	A	1.10077216921156	0	lncRNA	5927-1_{1..1788}	"transcript_id ""ENST00000576963.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000576963.1"" | genecode_v17"	chr17	 77797251	 77799038	+	ENSG00000262772.1	ENST00000576963.1	RP11-353N14.2	RP11-353N14.2-001	CBX4	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10chr17:77806955-77811503"	NA	inter
CUST_31030_PI429285431	0.9087007	A	0.90493006	A	1.00261702693708	0	lncRNA	32819-1_{1..203}	n337242|BC127202|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389211|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389211|-1.0396500|-0.1098681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337242|BC127202|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389211|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389211|-1.0396500|-0.1098681	chr7	 90634291	 90634493	+	NA	NA	NA	NA	CDK14	NA	chr7:90624291-90644494	inner
CUST_19878_PI429285431	1.6869133	A	0.8946799	A	1.73175327237823	0	lncRNA	21534-1_{1..648}	lnc-C2CD4A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2CD4A-1:1	chr15	 62353167	 62353814	+	lnc-C2CD4A-1	lnc-C2CD4A-1:1	ENSG00000259251.2	RP11-643M14.1	VPS13C	NA	chr15:62343167-62352664	inter
CUST_103_PI429285431	13.314193	P	12.785307	P	1.44281467290389	0	lncRNA	95-1_{1..1292}	"transcript_id ""ENST00000442116.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000442116.1"" | genecode_v17"	chr1	   227615	   228906	-	ENSG00000228463.4	ENST00000442116.1	AP006222.2	AP006222.2-003	NA	"hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90"	NA	inter
CUST_51785_PI429285431	3.6076438	P	3.8079004	P	0.870395739578194	0	lncRNA	55334-1_{1..432}	hg19_lincRNAsTranscripts_TCONS_l2_00012303 range=chr19:10527532-10528632 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012303 range=chr19:10527532-10528632 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 10527532	 10527963	+	NA	NA	NA	NA	PDE4A	NA	chr19:10531333-10538632	inner
CUST_4497_PI429285431	2.1912413	A	2.8087363	A	0.651801690979195	0	lncRNA	4446-1_{1..724}	"transcript_id ""ENST00000536330.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536330.1"" | genecode_v17"	chr12	127759012	127759735	-	ENSG00000256292.1	ENST00000536330.1	RP11-955H22.1	RP11-955H22.1-001	NA	NA	NA	inter
CUST_5123_PI429285431	0.90665436	A	0.912901	A	0.995679519342821	0	lncRNA	5063-1_{1..209}	"transcript_id ""ENST00000553644.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553644.1"" | genecode_v17"	chr15	 27929644	 27929852	-	ENSG00000258853.1	ENST00000553644.1	RP11-30G8.1	RP11-30G8.1-001	NA	NA	NA	inter
CUST_49685_PI429285431	4.4633946	P	4.84426	P	0.767976781907421	0	lncRNA	53462-1_{1..566}	hg19_lincRNAsTranscripts_TCONS_l2_00027037 range=chr7:5862820-5878783 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027037 range=chr7:5862820-5878783 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  5862820	  5863385	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44889_PI429285431	3.6611278	P	3.4977303	P	1.11992141362116	0	lncRNA	49411-1_{1..1062}	"gi|397139176|ref|XR_158815.1| PREDICTED: Homo sapiens uncharacterized LOC100996355 (LOC100996355), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139176|ref|XR_158815.1| PREDICTED: Homo sapiens uncharacterized LOC100996355 (LOC100996355), misc_RNA"	NA	NA	NA	NA	NA	XR_158815.1	NA	NA	NA	NA	NA	Unknown
CUST_23538_PI429285431	1.1710209	A	2.0250542	A	0.553235906717594	0	lncRNA	25105-1_{1..607}	lnc-CIT-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CIT-6:1	chr12	119554692	119555298	-	lnc-CIT-6	lnc-CIT-6:1	ENSG00000257095.1	RP11-364C11.2	SRRM4	NA	chr12:119544692-119564766	inner
CUST_4096_PI429285431	3.008955	A	3.1509042	A	0.906293850012861	0	lncRNA	4057-1_{1..553}	"transcript_id ""ENST00000582695.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582695.1"" | genecode_v17"	chr11	118865534	118866086	-	ENSG00000255121.2	ENST00000582695.1	RP11-110I1.12	RP11-110I1.12-002	CCDC84	NA	chr11:118868852-118877314	inter
LNCA_21_P0009424	0.92265993	A	0.91021025	A	1.0086668017199	0	lncRNA	BC041855	NA	BC041855	NA	Hs.639354	XLOC_012779	NA	NA	THC2502402	NA	"BROAD Institute lincRNA (XLOC_012779), lincRNA [TCONS_00026201]"	chr18:13204146-13204087	hs|18p11.21	Agilent_HUMAN_G3V2	BC041855	BC041855	chr18	 13204087	 13204146	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003344	0.92359126	A	0.91123426	A	1.00860200615751	0	lncRNA	ENST00000512873	NA	AK125145	NA	Hs.570815	XLOC_003484	NA	ENST00000512873	THC2517786	NA	"BROAD Institute lincRNA (XLOC_003484), lincRNA [TCONS_00007495]"	chr4:27283638-27283697	hs|4p15.2	Agilent_HUMAN_G3V2	ENST00000512873	ENST00000512873	chr4	 27283638	 27283697	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3648_PI429285431	0.90702116	A	1.4727305	A	0.675623146459972	0	lncRNA	3617-1_{1..1048}	"transcript_id ""ENST00000450890.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450890.1"" | genecode_v17"	chr10	 33247773	 33248820	+	ENSG00000229656.2	ENST00000450890.1	RP11-462L8.1	RP11-462L8.1-001	ITGB1	NA	chr10:33237773-33247293	inter
CUST_40368_PI429285431	1.3302716	A	0.9207045	A	1.32828718390454	0	lncRNA	41167-1_{1..1644}	n409144|NR_033262|lncRNA|Homosapiens||RefGeneNoncode|NR_033262||2.4764400|-0.1751153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409144|NR_033262|lncRNA|Homosapiens||RefGeneNoncode|NR_033262||2.4764400|-0.1751153	chrX	150866778	150868421	+	NA	NA	NA	NA	PRRG3	NA	chrX:150863730-150870063	inner
CUST_49744_PI429285431	2.5131576	A	0.92631286	A	3.00391656089976	0	lncRNA	53514-1_{1..512}	hg19_lincRNAsTranscripts_TCONS_l2_00026540 range=chr7:45763412-45768542 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026540 range=chr7:45763412-45768542 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 45763412	 45763923	-	NA	NA	NA	NA	ADCY1	NA	chr7:45753412-45762715	inter
CUST_45543_PI429285431	0.9075601	A	0.9118286	A	0.997045673895397	0	lncRNA	49945-1_{1..3000}	"gi|335353776|ref|NR_038374.1| Homo sapiens uncharacterized LOC100507605 (LOC100507605), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|335353776|ref|NR_038374.1| Homo sapiens uncharacterized LOC100507605 (LOC100507605), transcript variant 1, non-coding RNA"	Chr10	 29078240	 29081239	-	100507605	NR_038374.1	NA	NA	NA	NA	NA	inter
CUST_23426_PI429285431	4.391838	P	4.6191177	P	0.854244109738665	0	lncRNA	24994-1_{1..409}	lnc-IL2RA-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-IL2RA-2:1	chr10	  6179496	  6179904	-	lnc-IL2RA-2	lnc-IL2RA-2:1	ENSG00000232547.1	RP11-414H17.6	PFKFB3	NA	chr10:6186843-6189520	inter
CUST_13655_PI429285431	1.0395399	A	0.91091466	A	1.09325143340907	0	lncRNA	15294-1_{1..626}	lnc-TGFBR2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGFBR2-3:1	chr3	 30433346	 30433971	+	lnc-TGFBR2-3	lnc-TGFBR2-3:1	XLOC_002606	linc-TGFBR2-2	NA	NA	NA	inter
CUST_10773_PI429285431	9.088704	P	9.15331	P	0.956206421901765	0	lncRNA	12310-1_{1..340}	lnc-C8orf34-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C8orf34-1:1	chr8	 69942143	 69942482	+	lnc-C8orf34-1	lnc-C8orf34-1:1	XLOC_006830	linc-SULF1-2	NA	NA	NA	inter
CUST_12597_PI429285431	1.524226	A	1.5173583	A	1.00477167524814	0	lncRNA	14210-1_{1..405}	lnc-NME4-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NME4-1:4	chr16	   433430	   433834	+	lnc-NME4-1	lnc-NME4-1:4	XLOC_011618	linc-NME4	TMEM8A	NA	chr16:423430-431950	inter
CUST_4537_PI429285431	1.3952045	A	1.17149	A	1.16773628430247	0	lncRNA	4485-1_{1..283}	"transcript_id ""ENST00000542763.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000542763.1"" | genecode_v17"	chr12	132341965	132342247	+	ENSG00000256955.1	ENST00000542763.1	RP11-417L19.2	RP11-417L19.2-001	MMP17	NA	chr12:132331965-132336316	inter
CUST_9770_PI429285431	1.8047158	A	0.8976002	A	1.87529244997902	0	lncRNA	11287-1_{1..1617}	lnc-CSTB-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CSTB-1:3	chr21	 45231889	 45233505	-	lnc-CSTB-1	lnc-CSTB-1:3	XLOC_014107	linc-CSTB-3	RRP1	NA	chr21:45221889-45223983	inter
CUST_34667_PI429285431	0.9012395	A	0.8993122	A	1.0013367952764	0	lncRNA	36119-1_{1..2339}	n341570|BC035156|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4041|NULL|-1.2324500|-0.3198812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341570|BC035156|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4041|NULL|-1.2324500|-0.3198812	chr8	102193085	102195423	-	NA	NA	NA	NA	NA	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40"	NA	inter
CUST_26742_PI429285431	0.9229372	A	0.9065399	A	1.01143057771391	0	lncRNA	28235-1_{1..553}	n323785|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058813|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058813|-1.2860700|-0.3864691	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323785|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058813|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058813|-1.2860700|-0.3864691	chrX	154351140	154351692	+	NA	NA	NA	NA	BRCC3	NA	chrX:154341140-154351349	inner
CUST_12914_PI429285431	1.1552228	A	1.5002054	A	0.787317472159758	0	lncRNA	14542-2_{3001..4603}	lnc-MANEA-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MANEA-3:2	chr6	 94456834	 94458436	+	lnc-MANEA-3	lnc-MANEA-3:2	XLOC_005392	linc-MANEA-3	NA	NA	NA	inter
CUST_20610_PI429285431	3.6952353	P	4.5970664	P	0.535207003599083	0	lncRNA	22249-1_{1..393}	lnc-RABGEF1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RABGEF1-2:1	chr7	 66131101	 66131493	+	lnc-RABGEF1-2	lnc-RABGEF1-2:1	ENSG00000226824.2	RP4-756H11.3	NA	NA	NA	inter
CUST_50798_PI429285431	4.3360205	P	4.251667	P	1.06021253282952	0	lncRNA	54452-1_{1..937}	hg19_lincRNAsTranscripts_TCONS_l2_00004427 range=chr11:17662833-17667754 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004427 range=chr11:17662833-17667754 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 17662833	 17663769	+	NA	NA	NA	NA	OTOG	NA	chr11:17652833-17667491	inter
LNCA_21_P0004405	0.95826536	A	0.92204475	A	1.02542402882037	0	lncRNA	TCONS_00010946	NA	NA	NA	NA	XLOC_004859	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004859), lincRNA [TCONS_00010946]"	chr5:67804213-67804154	hs|5q13.1	Agilent_HUMAN_G3V2	TCONS_00010946	TCONS_00010946	chr5	 67804154	 67804213	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32853_PI429285431	0.92182684	A	0.9114616	A	1.00721050830721	0	lncRNA	34486-1_{1..2231}	n339517|AK091173|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1958|NULL|-1.2642200|-0.3423503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339517|AK091173|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1958|NULL|-1.2642200|-0.3423503	chr21	 42582895	 42585125	+	NA	NA	NA	NA	BACE2	NA	chr21:42572895-42595127	inner
CUST_23820_PI429285431	0.9248199	A	0.9122946	A	1.00871967317259	0	lncRNA	25383-1_{1..591}	lnc-TPPP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TPPP-2:1	chr5	   612267	   612857	-	lnc-TPPP-2	lnc-TPPP-2:1	ENSG00000249650.1	RP11-310P5.1	CEP72	NA	chr5:612405-622325	inter
CUST_14950_PI429285431	0.90530425	A	0.9005804	A	1.00327968976102	0	lncRNA	16614-1_{1..436}	lnc-ZNF804B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF804B-2:2	chr7	 89125948	 89126383	+	lnc-ZNF804B-2	lnc-ZNF804B-2:2	XLOC_006163	linc-STEAP1-3	NA	NA	NA	inter
CUST_40699_PI429285431	0.90599793	A	0.8989629	A	1.0048882197639	0	lncRNA	41436-1_{1..1360}	n410259|NR_037174_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037174_4||0.0001332|-0.2851908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410259|NR_037174_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037174_4||0.0001332|-0.2851908	chr6	  4098866	  4100225	+	NA	NA	NA	NA	C6orf201	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80chr6:4088866-4111281"	NA	inner
CUST_28001_PI429285431	0.9628	A	1.3499513	A	0.76463794473239	0	lncRNA	29610-1_{1..662}	n325255|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329697|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329697|-1.0645100|-0.2231487	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325255|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329697|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329697|-1.0645100|-0.2231487	chr2	 70204671	 70205332	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011869	4.6767273	P	4.883796	P	0.866295603104494	0	lncRNA	TCONS_l2_00014210	NA	NA	NA	NA	XLOC_l2_007731	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007731), lincRNA [TCONS_l2_00014210]"	chr2:208532154-208532213	hs|2q33.3	Agilent_HUMAN_G3V2	TCONS_l2_00014210	TCONS_l2_00014210	chr2	208532154	208532213	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48955_PI429285431	1.0121408	A	0.9009308	A	1.08013377364328	0	lncRNA	52794-4_{9001..9163}	hg19_lincRNAsTranscripts_TCONS_l2_00019025 range=chr3:181670177-181728449 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019025 range=chr3:181670177-181728449 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	181679177	181679339	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20"	NA	inter
CUST_50788_PI429285431	4.5890083	P	4.482192	P	1.0768492510235	0	lncRNA	54444-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00004348 range=chr11:3418281-3433649 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004348 range=chr11:3418281-3433649 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	  3418281	  3421280	+	NA	NA	NA	NA	NA	"hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0,hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0,hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0,hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0,hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80"	NA	inter
CUST_19613_PI429285431	8.899508	P	8.792929	P	1.07667214130496	0	lncRNA	21269-1_{1..580}	lnc-DLX5-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DLX5-2:3	chr7	 96643237	 96643816	-	lnc-DLX5-2	lnc-DLX5-2:3	ENSG00000231764.2	DLX6-AS1	DLX5	NA	chr7:96649702-96653372	inter
CUST_22448_PI429285431	2.2114942	A	2.207837	A	1.00253819364187	0	lncRNA	24035-1_{1..781}	lnc-ZNF174-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF174-1:1	chr16	  3434010	  3434790	+	lnc-ZNF174-1	lnc-ZNF174-1:1	ENSG00000262621.1	LA16c-306E5.2	ZNF434	"hg19_refFlat_ZNF434:range=chr16:3432852-34401245'pad=0,hg19_refFlat_ZNF434:range=chr16:3432852-34401245'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30chr16:3432085-3444706"	NA	inner
CUST_25806_PI429285431	1.9149123	A	3.2478583	P	0.396956823260915	0	lncRNA	27327-1_{1..456}	lnc-LIFR-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIFR-1:2	chr5	 38468341	 38468796	-	lnc-LIFR-1	lnc-LIFR-1:2	ENSG00000251257.1	CTD-2263F21.1	LIFR	NA	chr5:38475065-38478409	inter
CUST_41990_PI429285431	7.4583154	P	8.017281	P	0.678788674962737	0	lncRNA	43820-1_{1..64}	ENST00000581624 ncrna:miRNA chromosome:GRCh37:2:220771223:220771286:-1 gene:ENSG00000266518 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581624 ncrna:miRNA chromosome:GRCh37:2:220771223:220771286:-1 gene:ENSG00000266518 gene_biotype:miRNA transcript_biotype:miRNA	chr2	220771223	220771286	-	ENSG00000266518	ENST00000581624	NA	NA	NA	NA	NA	inter
CUST_25095_PI429285431	2.9262984	A	2.2369125	A	1.61259695159866	0	lncRNA	26632-1_{1..399}	lnc-C2CD4A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2CD4A-2:1	chr15	 62144055	 62144453	+	lnc-C2CD4A-2	lnc-C2CD4A-2:1	ENSG00000259564.1	RP11-16B9.1	VPS13C	NA	chr15:62144588-62154351	inter
CUST_8776_PI429285431	0.90864277	A	0.9194818	A	0.992515109276271	0	lncRNA	10318-1_{1..387}	lnc-SOX2-1:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SOX2-1:18	chr3	181417792	181418178	+	lnc-SOX2-1	lnc-SOX2-1:18	ENSG00000242808	RP11-4B14.2	NA	NA	NA	inter
CUST_8657_PI429285431	8.420724	P	8.505221	P	0.943113297913644	0	lncRNA	10208-2_{3001..3196}	lnc-CNOT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CNOT1-1:1	chr16	 58550116	 58550311	-	lnc-CNOT1-1	lnc-CNOT1-1:1	ENSG00000246134	ENST00000501095	CNOT1	"hg19_refFlat_NDRG4:range=chr16:58498335-585454805'pad=0,hg19_refFlat_NDRG4:range=chr16:58498335-585454805'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.90;hg19_refFlat_NDRG4:range=chr16:58534153-585454805'pad=0,hg19_refFlat_NDRG4:range=chr16:58534153-585454805'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.90;hg19_refFlat_NDRG4:range=chr16:58521683-585454805'pad=0,hg19_refFlat_NDRG4:range=chr16:58521683-585454805'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.90chr16:58553855-58557522"	NA	inter
LNCA_21_P0007871	0.9221732	A	0.9233228	A	0.999203475395504	0	lncRNA	ENST00000539178	NA	NA	NA	NA	XLOC_010018	NA	ENST00000539178	THC2733471	NA	"BROAD Institute lincRNA (XLOC_010018), lincRNA [TCONS_00020720]"	chr12:11583298-11583239	hs|12p13.2	Agilent_HUMAN_G3V2	ENST00000539178	ENST00000539178	chr12	 11583239	 11583298	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36322_PI429285431	0.91668606	A	0.9649844	A	0.967076323808059	0	lncRNA	37553-1_{1..957}	n344848|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_397|NULL|-1.4759500|-0.1965794	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344848|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_397|NULL|-1.4759500|-0.1965794	chr5	126190649	126191605	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60"	NA	inter
CUST_1637_PI429285431	1.2027642	A	2.2007165	A	0.5007101826231	0	lncRNA	1622-1_{1..1476}	"transcript_id ""ENST00000597482.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597482.1"" | genecode_v17"	chr3	195414692	195416167	+	ENSG00000242086.3	ENST00000597482.1	AC069513.3	AC069513.3-002	NA	NA	NA	inter
CUST_15023_PI429285431	5.3694453	P	5.619087	P	0.841105281711227	0	lncRNA	16685-1_{1..338}	lnc-WASF3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WASF3-1:1	chr13	 27092789	 27093126	+	lnc-WASF3-1	lnc-WASF3-1:1	XLOC_010321	linc-WASF3	NA	NA	NA	inter
CUST_24064_PI429285431	2.954513	A	2.1238546	A	1.77849682637996	0	lncRNA	25614-1_{1..550}	lnc-LIN54-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIN54-1:2	chr4	 83821487	 83822036	-	lnc-LIN54-1	lnc-LIN54-1:2	ENSG00000251022.1	RP11-163O17.1	SEC31A	NA	chr4:83811487-83812419	inter
CUST_7565_PI429285431	5.718675	P	5.9947433	P	0.825838567200081	0	lncRNA	9201-1_{1..504}	lnc-KLF4-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF4-4:2	chr9	109865055	109865558	-	lnc-KLF4-4	lnc-KLF4-4:2	ENSG00000230782	XLOC_007820	NA	NA	NA	inter
CUST_12116_PI429285431	0.90067744	A	0.9029327	A	0.998437994092648	0	lncRNA	13712-2_{3001..3329}	lnc-SOX11-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOX11-3:4	chr2	  6126097	  6126425	+	lnc-SOX11-3	lnc-SOX11-3:4	XLOC_001327	linc-RSAD2-2	NA	NA	NA	inter
CUST_2039_PI429285431	0.9106509	A	0.91165096	A	0.99930705143044	0	lncRNA	2031-1_{1..688}	"transcript_id ""ENST00000560688.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000560688.1"" | genecode_v17"	chr5	  2736776	  2737463	-	ENSG00000259757.1	ENST00000560688.1	RP11-129I19.2	RP11-129I19.2-001	IRX2	NA	chr5:2746279-2747873	inter
LNCA_21_P0007940	0.92779976	A	0.9247507	A	1.00211568224637	0	lncRNA	ENST00000454780	NA	NA	NA	NA	XLOC_010402	NA	ENST00000454780	THC2739077	NA	"BROAD Institute lincRNA (XLOC_010402), lincRNA [TCONS_00021555]"	chr13:58803277-58803336	hs|13q21.1	Agilent_HUMAN_G3V2	ENST00000454780	ENST00000454780	chr13	 58803277	 58803336	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35196_PI429285431	0.91137743	A	0.9015522	A	1.00683357350772	0	lncRNA	36597-1_{1..1750}	n342180|BC044924|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4667|NULL|-1.0604400|-0.2504981	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342180|BC044924|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4667|NULL|-1.0604400|-0.2504981	chr6	169362704	169364453	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17134_PI429285431	4.030075	P	3.998244	P	1.02230876843103	0	lncRNA	18843-1_{1..234}	lnc-INSC-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INSC-3:4	chr11	 15952303	 15952536	+	lnc-INSC-3	lnc-INSC-3:4	XLOC_009075	linc-C11orf58-2	NA	NA	NA	inter
LNCA_21_P0009347	0.9288283	A	0.92305326	A	1.00401097520977	0	lncRNA	TCONS_00025731	NA	NA	NA	NA	XLOC_012552	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012552), lincRNA [TCONS_00025731]"	chr17:65038604-65038545	hs|17q24.2	Agilent_HUMAN_G3V2	TCONS_00025731	TCONS_00025731	chr17	 65038545	 65038604	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011160	1.9437001	A	2.1179469	A	0.886230079977488	0	lncRNA	TCONS_l2_00006993	NA	NA	NA	NA	XLOC_l2_003843	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003843), lincRNA [TCONS_l2_00006993]"	chr13:106384166-106384225	hs|13q33.2	Agilent_HUMAN_G3V2	TCONS_l2_00006993	TCONS_l2_00006993	chr13	106384166	106384225	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003417	1.6489689	A	0.92232144	A	1.65478921496704	0	lncRNA	ENST00000513617	NA	NA	NA	NA	XLOC_003735	NA	ENST00000513617	NA	NA	"BROAD Institute lincRNA (XLOC_003735), lincRNA [TCONS_00007659]"	chr4:152722423-152722482	hs|4q31.3	Agilent_HUMAN_G3V2	ENST00000513617	ENST00000513617	chr4	152722423	152722482	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24946_PI429285431	6.8503942	P	7.401174	P	0.682651044709249	0	lncRNA	26486-1_{1..233}	lnc-SPAG1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPAG1-3:5	chr8	101505857	101506089	+	lnc-SPAG1-3	lnc-SPAG1-3:5	ENSG00000254364.1	KB-1615E4.3	NA	NA	NA	inter
CUST_26530_PI429285431	4.833853	P	3.6470516	P	2.27647465928561	0	lncRNA	28037-1_{1..1071}	lnc-ZNF705D-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ZNF705D-1:2	chr8	 12008506	 12009576	+	lnc-ZNF705D-1	lnc-ZNF705D-1:2	ENSG00000255052.2	FAM66D	FAM86B1	NA	chr8:12008472-12018698	inter
CUST_46512_PI429285431	1.1227586	A	0.9158073	A	1.15424645380693	0	lncRNA	50703-2_{3001..3358}	"gi|313760651|ref|NR_037623.1| Homo sapiens F-box protein 22 (FBXO22), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|313760651|ref|NR_037623.1| Homo sapiens F-box protein 22 (FBXO22), transcript variant 3, non-coding RNA"	Chr15	 76199200	 76199557	+	26263	NR_037623.1	NA	NA	NA	NA	NA	inter
CUST_13895_PI429285431	0.9251179	A	0.9186281	A	1.00450851950152	0	lncRNA	15540-1_{1..520}	lnc-WWOX-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WWOX-2:10	chr16	 79832336	 79832855	+	lnc-WWOX-2	lnc-WWOX-2:10	XLOC_011797	linc-DYNLRB2-3	NA	NA	NA	inter
CUST_2445_PI429285431	0.9224945	A	1.6601255	A	0.599723329301939	0	lncRNA	2437-1_{1..578}	"transcript_id ""ENST00000507236.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507236.1"" | genecode_v17"	chr5	176134357	176134934	-	ENSG00000248484.1	ENST00000507236.1	RP11-375B1.1	RP11-375B1.1-001	NA	NA	NA	inter
CUST_19121_PI429285431	0.9231587	A	0.91008544	A	1.00910287474975	0	lncRNA	20802-1_{1..3000}	lnc-SNURF-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SNURF-4:1	NA	NA	     2999	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3369_PI429285431	4.907274	P	5.294169	P	0.76477379750009	0	lncRNA	3344-1_{1..512}	"transcript_id ""ENST00000428006.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000428006.2"" | genecode_v17"	chr9	 13446490	 13447001	+	ENSG00000226197.2	ENST00000428006.2	RP11-536O18.1	RP11-536O18.1-001	NA	NA	NA	inter
CUST_51721_PI429285431	10.605791	P	10.954454	P	0.785311538643528	0	lncRNA	55278-1_{1..1618}	hg19_lincRNAsTranscripts_TCONS_l2_00011980 range=chr18:12066753-12068489 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011980 range=chr18:12066753-12068489 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 12066753	 12068370	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_631_PI429285431	1.5112587	A	2.1144576	A	0.658292697950737	0	lncRNA	623-1_{1..785}	"transcript_id ""ENST00000585783.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585783.1"" | genecode_v17"	chr2	   308972	   309756	-	ENSG00000235779.2	ENST00000585783.1	AC079779.5	AC079779.5-024	NA	NA	NA	inter
CUST_30124_PI429285431	2.5521178	A	3.2946453	A	0.597691321482139	0	lncRNA	31897-1_{1..330}	n334751|AJ008250|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244331|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244331|2.4174800|-0.0788774	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334751|AJ008250|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244331|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244331|2.4174800|-0.0788774	chr14	106331431	106331760	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28778_PI429285431	7.6910806	P	6.8871927	P	1.7457995252335	0	lncRNA	30485-1_{1..2042}	n326184|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092334|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092334|1.2201400|-0.2588795	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326184|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092334|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092334|1.2201400|-0.2588795	chr1	230929622	230931663	-	NA	NA	NA	NA	CAPN9	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.50;hg19_refFlat_CAPN9:range=chr1:230883243-2309373425'pad=0,hg19_refFlat_CAPN9:range=chr1:230883243-2309373425'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50chr1:230919622-230937749"	NA	inner
CUST_25180_PI429285431	3.2713604	P	3.372779	P	0.932115992427337	0	lncRNA	26711-1_{1..812}	lnc-DHX36-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX36-2:2	chr3	153480292	153481103	-	lnc-DHX36-2	lnc-DHX36-2:2	ENSG00000240456.2	RP11-23D24.2	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80"	NA	inter
CUST_2983_PI429285431	1.4060841	A	1.30733	A	1.07084828701541	0	lncRNA	2962-1_{1..331}	"transcript_id ""ENST00000523090.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523090.1"" | genecode_v17"	chr8	  5893955	  5894285	-	ENSG00000253189.1	ENST00000523090.1	RP11-158A14.1	RP11-158A14.1-001	NA	NA	NA	inter
CUST_26926_PI429285431	0.95311415	A	0.9143246	A	1.02725158035991	0	lncRNA	28445-1_{1..1686}	n324004|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053526|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053526|-0.9319550|-0.4096217	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324004|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053526|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053526|-0.9319550|-0.4096217	chr9	108080493	108082178	+	NA	NA	NA	NA	FKTN	NA	chr9:108320411-108403399	inner
CUST_32306_PI429285431	5.46214	P	5.389751	P	1.05145637952502	0	lncRNA	33989-1_{1..210}	n338883|L37703|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1309|NULL|-0.7568000|-0.1859110	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338883|L37703|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1309|NULL|-0.7568000|-0.1859110	chr2	 74225463	 74225672	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47502_PI429285431	6.0828824	P	5.798337	P	1.21802639734671	0	lncRNA	51516-1_{1..3000}	"gi|209529684|ref|NR_024209.1| Homo sapiens ring finger protein 185 (RNF185), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209529684|ref|NR_024209.1| Homo sapiens ring finger protein 185 (RNF185), transcript variant 4, non-coding RNA"	Chr22	 31556138	 31559137	+	91445	NR_024209.1	NA	NA	NA	NA	NA	inter
CUST_33007_PI429285431	1.1041198	A	3.01865	A	0.265258300136887	0	lncRNA	34622-1_{1..584}	n339689|BC033875|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2134|NULL|-0.8399190|-0.2422769	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339689|BC033875|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2134|NULL|-0.8399190|-0.2422769	chr20	 43375282	 43375865	+	NA	NA	NA	NA	RIMS4	NA	chr20:43380445-43385842	inner
CUST_1455_PI429285431	1.6286093	A	2.509014	A	0.543215029020583	0	lncRNA	1444-1_{1..1996}	"transcript_id ""ENST00000468859.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000468859.1"" | genecode_v17"	chr3	125581417	125583412	-	ENSG00000241288.2	ENST00000468859.1	RP11-379B18.5	RP11-379B18.5-001	NA	NA	NA	inter
CUST_49785_PI429285431	1.8859861	A	0.8916223	A	1.99220181029692	0	lncRNA	53543-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026601 range=chr7:57687757-57706334 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026601 range=chr7:57687757-57706334 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 57687757	 57690756	-	NA	NA	NA	NA	LOC100287633	"hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.21;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00chr7:57710228-57712559"	NA	inter
CUST_47027_PI429285431	4.3639994	P	4.552889	P	0.877280678707323	0	lncRNA	51117-2_{3001..5252}	"gi|384871622|ref|NR_047593.1| Homo sapiens ATPase, aminophospholipid transporter, class I, type 8B, member 3 (ATP8B3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384871622|ref|NR_047593.1| Homo sapiens ATPase, aminophospholipid transporter, class I, type 8B, member 3 (ATP8B3), transcript variant 3, non-coding RNA"	Chr19	  1785074	  1787325	-	148229	NR_047593.1	NA	NA	NA	NA	NA	inter
CUST_38987_PI429285431	5.015615	P	5.4434533	P	0.743374806406457	0	lncRNA	39969-2_{3001..4649}	n385228|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003uhk.1||5.4443800|-0.3857962	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n385228|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003uhk.1||5.4443800|-0.3857962	chr7	 81208702	 81210350	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4307_PI429285431	3.694117	P	3.5079262	P	1.13775568893669	0	lncRNA	4262-1_{1..382}	"transcript_id ""ENST00000540761.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000540761.1"" | genecode_v17"	chr12	 67964977	 67965358	-	ENSG00000256077.1	ENST00000540761.1	RP11-335O4.1	RP11-335O4.1-001	NA	NA	NA	inter
CUST_37331_PI429285431	12.306369	P	13.727317	P	0.373466825144293	0	lncRNA	38436-1_{1..240}	n345773|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1322|NULL|-1.3066900|-0.2034482	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345773|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1322|NULL|-1.3066900|-0.2034482	chr12	127650467	127650706	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47163_PI429285431	9.826683	P	9.034755	P	1.73138672126377	0	lncRNA	51241-1_{1..2384}	"gi|384381478|ref|NR_047577.1| Homo sapiens interleukin 4 induced 1 (IL4I1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384381478|ref|NR_047577.1| Homo sapiens interleukin 4 induced 1 (IL4I1), transcript variant 5, non-coding RNA"	Chr19	 50392911	 50395294	-	259307	NR_047577.1	NA	NA	NA	NA	NA	inter
CUST_2856_PI429285431	4.786237	P	4.9950743	P	0.865234261917007	0	lncRNA	2838-2_{3001..4702}	"transcript_id ""ENST00000421767.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000421767.1"" | genecode_v17"	chr7	 65844031	 65845732	-	ENSG00000179406.6	ENST00000421767.1	LINC00174	LINC00174-001	NA	NA	NA	inter
LNCA_21_P0001199	0.91580665	A	0.9023302	A	1.00938492815289	0	lncRNA	ENST00000458070	XR_108311	XR_108311	NA	NA	XLOC_001102	NA	ENST00000458070	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506128, transcript variant 1 (LOC100506128), miscRNA [XR_108311]"	chr1:177542893-177362896	hs|1q25.2	Agilent_HUMAN_G3V2	ENST00000458070	ENST00000458070	chr1	177362896	177542893	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19515_PI429285431	10.7057905	P	10.192387	P	1.4274136759275	0	lncRNA	21171-1_{1..565}	lnc-WIBG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WIBG-1:1	chr12	 56361019	 56361583	-	lnc-WIBG-1	lnc-WIBG-1:1	ENSG00000258554.1	RP11-973D8.4	CDK2	"hg19_refFlat_CDK2:range=chr12:56360793-563654095'pad=0,hg19_refFlat_CDK2:range=chr12:56360793-563654095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60chr12:56360556-56366568"	NA	inner
CUST_16221_PI429285431	5.4093137	P	4.9795218	P	1.34703926061707	0	lncRNA	17927-1_{1..211}	lnc-MYC-2:21	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYC-2:21	chr8	129007129	129007339	+	lnc-MYC-2	lnc-MYC-2:21	XLOC_006924	linc-EFR3A-5	NA	NA	NA	inter
CUST_41892_PI429285431	5.6311626	P	5.9067216	P	0.826130156079983	0	lncRNA	43597-1_{1..91}	ENST00000385025 ncrna:miRNA chromosome:GRCh37:X:49767754:49767844:1 gene:ENSG00000207758 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385025 ncrna:miRNA chromosome:GRCh37:X:49767754:49767844:1 gene:ENSG00000207758 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 49767754	 49767844	+	ENSG00000207758	ENST00000385025	NA	NA	CLCN5	NA	chrX:49757754-49777844	inner
CUST_3046_PI429285431	1.1156639	A	1.4453695	A	0.795698839507266	0	lncRNA	3025-1_{1..528}	"transcript_id ""ENST00000523840.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523840.1"" | genecode_v17"	chr8	 25283037	 25283564	-	ENSG00000253476.1	ENST00000523840.1	RP11-395I14.2	RP11-395I14.2-001	KCTD9	NA	chr8:25285363-25294096	inter
CUST_40351_PI429285431	1.4990978	A	0.92167985	A	1.49217624882958	0	lncRNA	41153-1_{1..3000}	n409074|NR_033151|lncRNA|Homosapiens||RefGeneNoncode|NR_033151||12.4476000|-0.1219920	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409074|NR_033151|lncRNA|Homosapiens||RefGeneNoncode|NR_033151||12.4476000|-0.1219920	chr15	 42433331	 42436330	-	NA	NA	NA	NA	VPS39	NA	chr15:42450899-42458839	inner
CUST_38831_PI429285431	0.9141774	A	0.91717654	A	0.997923313867522	0	lncRNA	39824-1_{1..2857}	n384627|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jlj.2||-0.8766870|-0.2662718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n384627|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jlj.2||-0.8766870|-0.2662718	chr5	 38557415	 38560271	+	NA	NA	NA	NA	LIFR	NA	chr5:38547415-38595507	inner
LNCA_21_P0010464	0.91370785	A	0.90035397	A	1.00929917541118	0	lncRNA	ENST00000426467	XR_109755	XR_109755	NA	Hs.729132	XLOC_014197	NA	ENST00000426467	THC2629924	NA	"PREDICTED: Homo sapiens hypothetical LOC100507657 (LOC100507657), miscRNA [XR_109755]"	chr22:27712861-27712920	hs|22q12.1	Agilent_HUMAN_G3V2	ENST00000426467	ENST00000426467	chr22	 27712861	 27712920	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1437_PI429285431	2.118031	A	2.538346	A	0.747261448421768	0	lncRNA	1426-1_{1..262}	"transcript_id ""ENST00000485384.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000485384.1"" | genecode_v17"	chr3	109366954	109367215	+	ENSG00000242029.1	ENST00000485384.1	RP11-457K10.1	RP11-457K10.1-001	NA	NA	NA	inter
CUST_47933_PI429285431	6.2181034	P	6.2311754	P	0.990980105585193	0	lncRNA	51824-1_{1..1523}	"gi|410172291|ref|XR_171698.1| PREDICTED: Homo sapiens uncharacterized LOC100996388 (LOC100996388), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172291|ref|XR_171698.1| PREDICTED: Homo sapiens uncharacterized LOC100996388 (LOC100996388), misc_RNA"	NA	NA	NA	NA	NA	XR_171698.1	NA	NA	NA	NA	NA	Unknown
CUST_17104_PI429285431	3.905236	P	4.0741286	P	0.889525210894322	0	lncRNA	18813-1_{1..265}	lnc-ULBP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ULBP3-1:1	chr6	150643393	150643657	-	lnc-ULBP3-1	lnc-ULBP3-1:1	XLOC_005877	linc-ULBP3-2	NA	NA	NA	inter
CUST_24633_PI429285431	1.4670519	A	1.4606422	A	1.00445274964266	0	lncRNA	26182-1_{1..405}	lnc-PRPF19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRPF19-1:1	chr11	 60681432	 60681836	-	lnc-PRPF19-1	lnc-PRPF19-1:1	ENSG00000256944.1	RP11-881M11.1	TMEM109	NA	chr11:60681371-60690915	inner
CUST_23050_PI429285431	0.91380286	A	0.9071214	A	1.00464197590515	0	lncRNA	24621-1_{1..507}	lnc-RTN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RTN1-1:1	chr14	 60386904	 60387410	-	lnc-RTN1-1	lnc-RTN1-1:1	ENSG00000261120.1	RP11-62H20.1	NA	NA	NA	inter
CUST_21337_PI429285431	0.912156	A	0.912817	A	0.999541934657628	0	lncRNA	22960-1_{1..1891}	lnc-RP11-210M15.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-RP11-210M15.2.1-2:1	chr15	 80736628	 80738518	-	lnc-RP11-210M15.2.1-2	lnc-RP11-210M15.2.1-2:1	ENSG00000258010.1	RP11-210M15.1	ARNT2	NA	chr15:80726628-80747493	inner
CUST_45448_PI429285431	0.913774	A	0.9114362	A	1.00162175310022	0	lncRNA	49865-1_{1..2422}	"gi|310124576|ref|XR_110579.1| PREDICTED: Homo sapiens uncharacterized LOC100130548 (LOC100130548), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310124576|ref|XR_110579.1| PREDICTED: Homo sapiens uncharacterized LOC100130548 (LOC100130548), misc_RNA"	Chr9	136919412	136921833	+	100130548	XR_110579.2	NA	NA	NA	NA	NA	inter
CUST_16123_PI429285431	0.8944729	A	0.8906509	A	1.00265272077788	0	lncRNA	17829-1_{1..790}	lnc-DHX37-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-9:2	chr12	127174581	127175370	-	lnc-DHX37-9	lnc-DHX37-9:2	XLOC_010243	linc-DHX37-8	NA	NA	NA	inter
CUST_20889_PI429285431	7.362769	P	7.8478475	P	0.714458193675307	0	lncRNA	22521-1_{1..226}	lnc-CYP11B1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYP11B1-1:2	chr8	143916064	143916289	-	lnc-CYP11B1-1	lnc-CYP11B1-1:2	ENSG00000253728.1	RP11-706C16.5	GML	NA	chr8:143916217-143926204	inter
LNCA_21_P0006984	0.91526735	A	0.9024296	A	1.00893815912054	0	lncRNA	THC2662800	NA	NA	NA	NA	XLOC_008770	NA	NA	THC2662800	NA	"BROAD Institute lincRNA (XLOC_008770), lincRNA [TCONS_00018469]"	chr10:031120841-031120782	hs|10p11.23	Agilent_HUMAN_G3V2	THC2662800	THC2662800	chr10	 31120782	 31120841	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32985_PI429285431	5.0559487	P	5.721689	P	0.630365157814553	0	lncRNA	34601-1_{1..1241}	n339665|BC039668|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2109|NULL|-0.8791410|-0.2542593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339665|BC039668|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2109|NULL|-0.8791410|-0.2542593	chr20	 35136104	 35137344	-	NA	NA	NA	NA	DLGAP4	NA	chr20:35126104-35157040	inner
CUST_26493_PI429285431	2.1013386	A	2.66945	A	0.67449918262815	0	lncRNA	28002-1_{1..685}	lnc-CDH9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CDH9-1:1	chr5	 26749982	 26750666	-	lnc-CDH9-1	lnc-CDH9-1:1	ENSG00000251033.1	CTD-2533K21.4	NA	NA	NA	inter
CUST_39618_PI429285431	4.9203043	P	6.2817965	P	0.389179547643806	0	lncRNA	40557-1_{1..1423}	n387701|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011lrg.1||1.6092200|-0.3450649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387701|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011lrg.1||1.6092200|-0.3450649	chr9	 69379291	 69380713	-	NA	NA	NA	NA	ANKRD20A4	NA	chr9:69381981-69390714	inter
LNCA_21_P0010020	0.91665363	A	0.9039863	A	1.00881898418675	0	lncRNA	TCONS_00028339	NA	NA	NA	NA	XLOC_013687	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013687), lincRNA [TCONS_00028339]"	chr20:23011197-23003861	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028339	TCONS_00028339	chr20	 23003861	 23011197	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5835_PI429285431	2.073319	A	1.7434418	A	1.25690638401538	0	lncRNA	5764-1_{1..478}	"transcript_id ""ENST00000420946.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420946.1"" | genecode_v17"	chr17	 36158869	 36159346	-	ENSG00000237184.1	ENST00000420946.1	AC091199.1	AC091199.1-001	NA	NA	NA	inter
LNCA_21_P0003857	0.9188671	A	0.9062387	A	1.00879176236088	0	lncRNA	TCONS_00008928	NA	NA	NA	NA	XLOC_003772	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003772), lincRNA [TCONS_00008928]"	chr4:170834207-170838151	hs|4q33	Agilent_HUMAN_G3V2	TCONS_00008928	TCONS_00008928	chr4	170834207	170838151	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13070_PI429285431	1.15822	A	1.6297936	A	0.721177553999225	0	lncRNA	14697-1_{1..1054}	lnc-NEURL1B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NEURL1B-4:1	chr5	171934516	171935569	+	lnc-NEURL1B-4	lnc-NEURL1B-4:1	XLOC_004631	linc-NEURL1B-3	NA	"hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0,hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50"	NA	inter
CUST_27921_PI429285431	0.92729056	A	1.1718771	A	0.844057658801657	0	lncRNA	29522-1_{1..578}	n325165|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331365|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331365|-1.2536700|-0.3550331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325165|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331365|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331365|-1.2536700|-0.3550331	chr2	114305095	114305672	-	NA	NA	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0,hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
CUST_32150_PI429285431	5.168981	P	5.198876	P	0.979491582834856	0	lncRNA	33850-1_{1..1453}	n338717|CR590183|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1137|NULL|-0.9007010|-0.1630391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338717|CR590183|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1137|NULL|-0.9007010|-0.1630391	chr2	 27307989	 27309441	-	NA	NA	NA	NA	KHK	"hg19_refFlat_EMILIN1:range=chr2:27301934-273088835'pad=0,hg19_refFlat_EMILIN1:range=chr2:27301934-273088835'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.90chr2:27309611-27319442"	NA	inner
CUST_11956_PI429285431	0.91443074	A	1.037559	A	0.918194528371384	0	lncRNA	13536-1_{1..3000}	lnc-AL137145.1-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AL137145.1-2:7	chr10	  6627760	  6630759	+	lnc-AL137145.1-2	lnc-AL137145.1-2:7	XLOC_008370	linc-ITIH2-10	NA	NA	NA	inter
CUST_35399_PI429285431	2.9565794	P	3.776609	P	0.566430320989111	0	lncRNA	36810-1_{1..281}	n342459|AB076376|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4952|NULL|-1.5031500|-0.3061648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342459|AB076376|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4952|NULL|-1.5031500|-0.3061648	chr2	197696698	197696978	-	NA	NA	NA	NA	PGAP1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80chr2:197697728-197706914"	NA	inter
CUST_42572_PI429285431	6.071518	P	5.9808784	P	1.06484216168473	0	lncRNA	45406-1_{1..135}	ENST00000516313 ncrna:snoRNA chromosome:GRCh37:16:75443230:75443364:-1 gene:ENSG00000252122 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516313 ncrna:snoRNA chromosome:GRCh37:16:75443230:75443364:-1 gene:ENSG00000252122 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 75443230	 75443364	-	ENSG00000252122	ENST00000516313	NA	NA	CFDP1	NA	chr16:75433230-75453364	inner
CUST_44543_PI429285431	6.0377574	P	4.85209	P	2.27468598747298	0	lncRNA	49132-1_{1..3000}	"gi|402478648|ref|NR_073103.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402478648|ref|NR_073103.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 2, non-coding RNA"	Chr5	 52285156	 52288155	+	3673	NR_073103.1	NA	NA	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.21;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00"	NA	inter
CUST_15216_PI429285431	2.4433248	A	2.621308	A	0.88393782434712	0	lncRNA	16886-1_{1..541}	lnc-C2orf40-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2orf40-3:1	chr2	107160448	107160988	+	lnc-C2orf40-3	lnc-C2orf40-3:1	XLOC_001613	linc-RGPD4-7	NA	NA	NA	inter
CUST_28575_PI429285431	3.1915495	P	2.618495	A	1.48766996036902	0	lncRNA	30255-1_{1..339}	n325934|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049069|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049069|-1.2562600|-0.3632080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325934|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049069|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049069|-1.2562600|-0.3632080	chr10	 82083506	 82083844	+	NA	NA	NA	NA	DYDC1	NA	chr10:82073506-82094162	inter
CUST_10125_PI429285431	0.8957831	A	0.8977415	A	0.998643461492899	0	lncRNA	11650-1_{1..341}	lnc-AC091801.1.1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC091801.1.1-5:3	chr7	  3140656	  3140996	-	lnc-AC091801.1.1-5	lnc-AC091801.1.1-5:3	XLOC_006338	linc-CARD11-10	NA	NA	NA	inter
CUST_47829_PI429285431	9.014564	P	8.429691	P	1.49990694712761	0	lncRNA	51739-4_{9001..12000}	"gi|410170958|ref|XR_171122.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410170958|ref|XR_171122.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	XR_171122.1	NA	NA	NA	NA	NA	Unknown
CUST_36668_PI429285431	2.1678202	A	2.4670682	A	0.812675890583872	0	lncRNA	37856-1_{1..3000}	n345161|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_710|NULL|-1.3467000|-0.3548475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345161|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_710|NULL|-1.3467000|-0.3548475	chr12	 57745328	 57748327	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.34;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-18.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10"	NA	inter
LNCA_19_P00330507	5.9861674	P	5.8717365	P	1.08254792854221	0	lncRNA	TCONS_00001027	NA	NA	NA	NA	XLOC_000294	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000294), lincRNA [TCONS_00001027]"	chr1:93804415-93804474	hs|1p22.1	Agilent_HUMAN_G3V2	TCONS_00001027	TCONS_00001027	chr1	 93804415	 93804474	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13288_PI429285431	1.0865626	A	0.8984621	A	1.13926273697171	0	lncRNA	14921-1_{1..522}	lnc-CCDC127-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC127-1:1	chr5	   271460	   271981	-	lnc-CCDC127-1	lnc-CCDC127-1:1	XLOC_004692	linc-CCDC127	PDCD6	NA	chr5:271736-281631	inter
CUST_26989_PI429285431	0.9232184	A	2.5449026	A	0.324955889334465	0	lncRNA	28516-1_{1..1014}	n324089|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000037030|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000037030|-1.0475900|-0.2698124	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324089|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000037030|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000037030|-1.0475900|-0.2698124	chr9	 46160846	 46161859	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31389_PI429285431	0.92258555	A	0.9113264	A	1.00783478059814	0	lncRNA	33166-1_{1..1106}	n337854|BC030120|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|237|NULL|-1.1589100|-0.2398581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337854|BC030120|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|237|NULL|-1.1589100|-0.2398581	chr1	 35324803	 35325908	+	NA	NA	NA	NA	C1orf212	NA	chr1:35315963-35325417	inner
LNCA_21_P0013456	2.7762504	A	2.8990772	A	0.918386410810922	0	lncRNA	TCONS_l2_00027518	NA	NA	NA	NA	XLOC_l2_014048	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014048), lincRNA [TCONS_l2_00027518]"	NA	NA	Agilent_HUMAN_G3V2	TCONS_l2_00027518	TCONS_l2_00027518	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15120_PI429285431	3.4835367	P	3.7314515	P	0.842112684064341	0	lncRNA	16780-1_{1..218}	lnc-FOXB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXB1-1:1	chr15	 60589748	 60589965	+	lnc-FOXB1-1	lnc-FOXB1-1:1	XLOC_011271	linc-C2CD4A-7	NA	NA	NA	inter
CUST_12400_PI429285431	0.90484405	A	0.901152	A	1.00256241142668	0	lncRNA	14012-1_{1..274}	lnc-ARRDC3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARRDC3-3:1	chr5	 90560480	 90560753	-	lnc-ARRDC3-3	lnc-ARRDC3-3:1	XLOC_004923	linc-LYSMD3-1	NA	NA	NA	inter
CUST_35849_PI429285431	2.5612931	A	1.5054338	A	2.07895610858855	0	lncRNA	37247-1_{1..3000}	n344518|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_66|NULL|-1.5737000|-0.2940961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344518|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_66|NULL|-1.5737000|-0.2940961	chr1	177975566	177978565	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32077_PI429285431	0.91610765	A	0.9131678	A	1.00203982635971	0	lncRNA	33784-2_{3001..4234}	n338639|BC044918|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1053|NULL|0.3075180|-0.2901643	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338639|BC044918|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1053|NULL|0.3075180|-0.2901643	chr2	  6509141	  6510374	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_50111_PI429285431	9.169275	P	8.416697	P	1.68480076903365	0	lncRNA	53841-1_{1..1034}	hg19_lincRNAsTranscripts_TCONS_l2_00028798 range=chr9:69065505-69087362 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028798 range=chr9:69065505-69087362 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69065505	 69066538	+	NA	NA	NA	NA	LOC100507370	NA	chr9:69065490-69089939	inter
CUST_42098_PI429285431	7.3721514	P	7.62692	P	0.838121553772014	0	lncRNA	44046-1_{1..81}	ENST00000408639 ncrna:miRNA chromosome:GRCh37:19:10514134:10514214:-1 gene:ENSG00000221566 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408639 ncrna:miRNA chromosome:GRCh37:19:10514134:10514214:-1 gene:ENSG00000221566 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 10514134	 10514214	-	ENSG00000221566	ENST00000408639	NA	NA	CDC37	NA	chr19:10504134-10514271	inner
LNCA_21_P0008386	0.9786215	A	0.92347705	A	1.03896312438737	0	lncRNA	TCONS_00022627	NA	NA	NA	NA	XLOC_010929	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010929), lincRNA [TCONS_00022627]"	chr14:101045602-101045661	hs|14q32.2	Agilent_HUMAN_G3V2	TCONS_00022627	TCONS_00022627	chr14	101045602	101045661	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26102_PI429285431	0.94680023	A	0.90626144	A	1.02849785854277	0	lncRNA	27614-1_{1..1215}	lnc-C5orf58-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C5orf58-1:1	chr5	169848975	169850189	+	lnc-C5orf58-1	lnc-C5orf58-1:1	ENSG00000253647.1	CTD-2270F17.1	KCNIP1	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-26.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30chr5:169838975-169859848"	NA	inner
CUST_13619_PI429285431	3.875061	P	4.3459005	P	0.721544610892185	0	lncRNA	15258-1_{1..577}	lnc-AC092031.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092031.1-1:5	chr7	 96285769	 96286345	-	lnc-AC092031.1-1	lnc-AC092031.1-1:5	XLOC_006529	linc-SLC25A13	NA	NA	NA	inter
CUST_36878_PI429285431	3.182446	P	3.0167546	A	1.12170351662922	0	lncRNA	38036-1_{1..2874}	n345346|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_895|NULL|-1.3147000|-0.2607575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345346|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_895|NULL|-1.3147000|-0.2607575	chr17	 42101056	 42103929	-	NA	NA	NA	NA	LSM12	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20chr17:42112003-42121361"	NA	inter
CUST_11221_PI429285431	2.004605	A	1.7952775	A	1.15614912921222	0	lncRNA	12779-1_{1..596}	lnc-AP000679.2.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP000679.2.1-1:2	chr11	119899552	119900147	+	lnc-AP000679.2.1-1	lnc-AP000679.2.1-1:2	XLOC_009304	linc-OAF-1	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_10622_PI429285431	0.9121146	A	1.0874698	A	0.885549464776372	0	lncRNA	12153-1_{1..2503}	lnc-HES1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HES1-1:1	chr3	193919764	193922266	+	lnc-HES1-1	lnc-HES1-1:1	XLOC_002976	linc-FAM43A-5	NA	NA	NA	inter
CUST_951_PI429285431	1.5458044	A	2.3276925	A	0.581605130161785	0	lncRNA	941-1_{1..718}	"transcript_id ""ENST00000414030.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414030.1"" | genecode_v17"	chr2	 87769469	 87770186	+	ENSG00000222041.6	ENST00000414030.1	LINC00152	LINC00152-010	NA	NA	NA	inter
CUST_33731_PI429285431	2.6271687	A	0.9171328	A	3.27168964589029	0	lncRNA	35289-1_{1..2993}	n340510|AK096753|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2972|NULL|-0.9818670|-0.2682203	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340510|AK096753|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2972|NULL|-0.9818670|-0.2682203	chr17	 12667658	 12670650	+	NA	NA	NA	NA	MYOCD	NA	chr17:12657658-12670651	inner
CUST_3468_PI429285431	5.486354	P	5.184178	P	1.23300273510612	0	lncRNA	3439-1_{1..916}	"transcript_id ""ENST00000421297.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421297.1"" | genecode_v17"	chr9	 92501142	 92502057	+	ENSG00000226206.1	ENST00000421297.1	RP5-1050E16.2	RP5-1050E16.2-001	NA	NA	NA	inter
CUST_39970_PI429285431	0.92104334	A	0.9278383	A	0.995301166854674	0	lncRNA	40840-1_{1..571}	n407043|NR_024541|lncRNA|Homosapiens||RefGeneNoncode|NR_024541||-1.1790700|-0.2810906	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407043|NR_024541|lncRNA|Homosapiens||RefGeneNoncode|NR_024541||-1.1790700|-0.2810906	chr6	  2965322	  2965892	-	NA	NA	NA	NA	SERPINB6	NA	chr6:2955322-2972399	inner
CUST_11642_PI429285431	8.314856	P	8.226178	P	1.06339530359954	0	lncRNA	13219-1_{1..773}	lnc-RWDD3-7:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RWDD3-7:4	chr1	 96488089	 96488861	+	lnc-RWDD3-7	lnc-RWDD3-7:4	XLOC_000312	linc-PTBP2-2	NA	NA	NA	inter
CUST_13930_PI429285431	7.1630964	P	7.536465	P	0.771977872139712	0	lncRNA	15577-1_{1..466}	lnc-LCP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LCP1-1:1	chr13	 46695227	 46695692	-	lnc-LCP1-1	lnc-LCP1-1:1	XLOC_010595	linc-CPB2	LCP1	"hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90chr13:46700058-46705391"	NA	inter
CUST_17955_PI429285431	0.9209151	A	0.92732126	A	0.995569432310066	0	lncRNA	19686-1_{1..1859}	lnc-TRIM38-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIM38-1:1	chr6	 25999311	 26001169	+	lnc-TRIM38-1	lnc-TRIM38-1:1	XLOC_005208	linc-HIST1H3A	NA	NA	NA	inter
CUST_37994_PI429285431	4.5924377	P	4.5924377	P	1	0	lncRNA	39081-1_{1..322}	n346549|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2099|NULL|-1.2639300|-0.1639859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346549|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2099|NULL|-1.2639300|-0.1639859	chr15	 28881798	 28882119	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00321221	5.5952935	P	6.017771	P	0.74614219428934	0	lncRNA	ENST00000507887	NA	NA	NA	NA	XLOC_l2_011969	NA	ENST00000507887	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011969), lincRNA [TCONS_l2_00023692]"	chr5:25413622-25413563	hs|5p14.1	Agilent_HUMAN_G3V2	ENST00000507887	ENST00000507887	chr5	 25413563	 25413622	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39390_PI429285431	0.8985652	A	0.90117204	A	0.998194707707816	0	lncRNA	40353-1_{1..431}	n386551|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010nwq.1||0.3693660|-0.1524617	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386551|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010nwq.1||0.3693660|-0.1524617	chrY	  9448329	  9448759	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003613	4.3653803	P	4.073911	P	1.22388609915569	0	lncRNA	TCONS_00008087	NA	NA	NA	NA	XLOC_003548	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003548), lincRNA [TCONS_00008087]"	chr4:58293734-58293793	hs|4q12	Agilent_HUMAN_G3V2	TCONS_00008087	TCONS_00008087	chr4	 58293734	 58293793	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48288_PI429285431	2.0626276	A	3.3171034	A	0.419145835366237	0	lncRNA	52147-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00000114 range=chr1:16971255-16977291 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000114 range=chr1:16971255-16977291 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16971255	 16974254	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001526	0.92504877	A	0.9246152	A	1.00030057298609	0	lncRNA	TCONS_00001550	NA	NA	NA	NA	XLOC_000893	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000893), lincRNA [TCONS_00001550]"	chr1:84920470-84920411	hs|1p22.3	Agilent_HUMAN_G3V2	TCONS_00001550	TCONS_00001550	chr1	 84920411	 84920470	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42398_PI429285431	0.9125146	A	0.9240744	A	0.992019372877237	0	lncRNA	45094-1_{1..124}	ENST00000517160 ncrna:snoRNA chromosome:GRCh37:1:12281205:12281328:-1 gene:ENSG00000252969 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517160 ncrna:snoRNA chromosome:GRCh37:1:12281205:12281328:-1 gene:ENSG00000252969 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 12281205	 12281328	-	ENSG00000252969	ENST00000517160	NA	NA	VPS13D	NA	chr1:12280784-12291328	inter
CUST_26906_PI429285431	3.2311788	P	2.920864	A	1.23997823706144	0	lncRNA	28424-1_{1..523}	n323982|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053810|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053810|-1.1608400|-0.2545482	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323982|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053810|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053810|-1.1608400|-0.2545482	chr9	119585546	119586068	+	NA	NA	NA	NA	ASTN2	NA	chr9:119575546-119680170	inner
CUST_34254_PI429285431	0.9028088	A	0.90385795	A	0.999273048992523	0	lncRNA	35757-1_{1..1655}	n341113|AL050204|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3579|NULL|0.3849620|-0.4295411	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341113|AL050204|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3579|NULL|0.3849620|-0.4295411	chr11	108376161	108377815	-	NA	NA	NA	NA	EXPH5	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70chr11:108376158-108387780"	NA	inner
CUST_2375_PI429285431	1.0694063	A	1.2286255	A	0.895509597940163	0	lncRNA	2368-1_{1..676}	"transcript_id ""ENST00000511165.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511165.1"" | genecode_v17"	chr5	135802366	135803041	+	ENSG00000249803.1	ENST00000511165.1	RP11-114H21.2	RP11-114H21.2-002	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30"	NA	inter
CUST_23633_PI429285431	1.3201455	A	0.996925	A	1.25112028541598	0	lncRNA	25198-1_{1..1833}	lnc-CTR9-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTR9-6:1	chr11	 11204910	 11206742	+	lnc-CTR9-6	lnc-CTR9-6:1	ENSG00000254401.1	RP11-179A10.1	NA	"hg19_refFlat_HMGN1:range=chr21:40715038-407208435'pad=0,hg19_refFlat_HMGN1:range=chr21:40715038-407208435'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40"	NA	inter
LNCA_21_P0004237	6.201038	P	6.326205	P	0.916897901013958	0	lncRNA	TCONS_00009908	NA	NA	NA	NA	XLOC_004321	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004321), lincRNA [TCONS_00009908]"	chr5:25297857-25302330	hs|5p14.1	Agilent_HUMAN_G3V2	TCONS_00009908	TCONS_00009908	chr5	 25297857	 25302330	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35302_PI429285431	0.919322	A	0.9942045	A	0.949419443072425	0	lncRNA	36705-1_{1..1887}	n342324|AK092435|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4816|NULL|-1.0488600|-0.4131473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342324|AK092435|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4816|NULL|-1.0488600|-0.4131473	chr1	161583095	161584981	+	NA	NA	NA	NA	FCGR3B	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60chr1:161587785-161594982"	NA	inter
LNCA_21_P0014846	6.6374626	P	6.2041264	P	1.3503526293458	0	lncRNA	ENST00000546112	XR_132717	XR_132717	NA	Hs.694646	LOC100288831	NA	ENST00000546112	THC2640787	NA	"PREDICTED: Homo sapiens hypothetical LOC100288831 (LOC100288831), miscRNA [XR_132717]"	chr3:9260066-9260125	hs|3p25.3	Agilent_HUMAN_G3V2	ENST00000546112	ENST00000546112	chr3	  9260066	  9260125	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47594_PI429285431	0.90558094	A	0.89850026	A	1.00492001710963	0	lncRNA	51597-1_{1..640}	"gi|294459986|ref|NR_033460.1| Homo sapiens P antigen family, member 3 (prostate associated) (PAGE3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|294459986|ref|NR_033460.1| Homo sapiens P antigen family, member 3 (prostate associated) (PAGE3), non-coding RNA"	NA	NA	NA	NA	NA	NR_033460.1	NA	NA	NA	NA	NA	Unknown
CUST_44628_PI429285431	0.91615635	A	0.9059159	A	1.00712339054498	0	lncRNA	49194-1_{1..2185}	"gi|310119650|ref|XR_110068.1| PREDICTED: Homo sapiens uncharacterized LOC100128059 (LOC100128059), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310119650|ref|XR_110068.1| PREDICTED: Homo sapiens uncharacterized LOC100128059 (LOC100128059), misc_RNA"	NA	NA	NA	NA	NA	XR_110068.1	NA	NA	NA	NA	NA	Unknown
CUST_16075_PI429285431	0.92394197	A	0.91611826	A	1.00543771351436	0	lncRNA	17778-1_{1..1394}	lnc-SH2D4A-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SH2D4A-2:6	chr8	 19002002	 19003395	+	lnc-SH2D4A-2	lnc-SH2D4A-2:6	XLOC_006730	linc-SH2D4A-2	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90"	NA	inter
CUST_50955_PI429285431	1.1891719	A	0.90982836	A	1.21364252299094	0	lncRNA	54596-1_{1..884}	hg19_lincRNAsTranscripts_TCONS_l2_00006312 range=chr12:70612934-70619160 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006312 range=chr12:70612934-70619160 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 70612934	 70613817	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17650_PI429285431	1.4282038	A	1.0425087	A	1.30648911055374	0	lncRNA	19379-1_{1..949}	lnc-NLRP4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NLRP4-1:1	chr19	 56400283	 56401231	+	lnc-NLRP4-1	lnc-NLRP4-1:1	XLOC_013162	linc-NLRP8	NLRP4	NA	chr19:56390283-56393221	inter
LNCA_21_P0009522	2.8483596	A	3.3044796	P	0.728944055024628	0	lncRNA	TCONS_00026411	NA	NA	NA	NA	XLOC_012754	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012754), lincRNA [TCONS_00026411]"	chr18:9322119-9322060	hs|18p11.22	Agilent_HUMAN_G3V2	TCONS_00026411	TCONS_00026411	chr18	  9322060	  9322119	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009444	2.1978683	A	3.7589896	P	0.338887587256384	0	lncRNA	TCONS_00026245	NA	NA	NA	NA	XLOC_012614	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012614), lincRNA [TCONS_00026245]"	chr18:5214899-5214958	hs|18p11.31	Agilent_HUMAN_G3V2	TCONS_00026245	TCONS_00026245	chr18	  5214899	  5214958	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43790_PI429285431	0.91524065	A	0.91539085	A	0.999895894712811	0	lncRNA	48521-1_{1..927}	"gi|336176076|ref|NR_038432.1| Homo sapiens uncharacterized LOC100506274 (LOC100506274), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336176076|ref|NR_038432.1| Homo sapiens uncharacterized LOC100506274 (LOC100506274), non-coding RNA"	Chr2	  7561392	  7562318	+	100506274	NR_038432.1	NA	NA	NA	NA	NA	inter
CUST_17081_PI429285431	0.9179517	A	0.9177232	A	1.00015839667419	0	lncRNA	18789-2_{3001..3133}	lnc-RP11-529J17.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-529J17.2.1-2:1	chr15	 23662829	 23662961	+	lnc-RP11-529J17.2.1-2	lnc-RP11-529J17.2.1-2:1	XLOC_011167	linc-MKRN3-2	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40"	NA	inter
CUST_1819_PI429285431	0.90810955	A	0.89856136	A	1.00664025032762	0	lncRNA	1806-1_{1..257}	"transcript_id ""ENST00000503666.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503666.1"" | genecode_v17"	chr4	 88183083	 88183339	-	ENSG00000250572.1	ENST00000503666.1	RP11-529H2.1	RP11-529H2.1-001	NA	NA	NA	inter
LNCA_21_P0007170	10.850649	P	11.186861	P	0.792118402789091	0	lncRNA	TCONS_00019202	NA	NA	NA	NA	XLOC_009038	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009038), lincRNA [TCONS_00019202]"	chr11:4693299-4693358	hs|11p15.4	Agilent_HUMAN_G3V2	TCONS_00019202	TCONS_00019202	chr11	  4693299	  4693358	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5494_PI429285431	0.8883506	A	1.3600404	A	0.721119470028133	0	lncRNA	5426-1_{1..540}	"transcript_id ""ENST00000565347.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565347.1"" | genecode_v17"	chr16	 32661463	 32662002	+	ENSG00000261569.1	ENST00000565347.1	RP11-586K12.11	RP11-586K12.11-001	TP53TG3	NA	chr16:32684849-32685277	inter
CUST_48646_PI429285431	3.4965098	P	3.0836596	P	1.33131337120219	0	lncRNA	52493-1_{1..351}	hg19_lincRNAsTranscripts_TCONS_l2_00013785 range=chr2:91925029-91927269 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013785 range=chr2:91925029-91927269 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 91925029	 91925379	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51657_PI429285431	4.260623	P	4.5564327	P	0.814615008516459	0	lncRNA	55226-1_{1..800}	hg19_lincRNAsTranscripts_TCONS_l2_00011407 range=chr17:62964106-62971780 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011407 range=chr17:62964106-62971780 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 62964106	 62964905	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32231_PI429285431	0.89689046	A	0.89088196	A	1.00417345956156	0	lncRNA	33923-1_{1..689}	n338804|AF339790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1227|NULL|-1.2050000|-0.3242812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338804|AF339790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1227|NULL|-1.2050000|-0.3242812	chr13	 94287786	 94288474	+	NA	NA	NA	NA	GPC6	NA	chr13:94277786-94298466	inner
CUST_22991_PI429285431	1.1550314	A	1.321639	A	0.890935193967435	0	lncRNA	24565-1_{1..1031}	lnc-LRP12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRP12-1:1	chr8	106200764	106201794	-	lnc-LRP12-1	lnc-LRP12-1:1	ENSG00000254041.1	RP11-574O7.1	NA	NA	NA	inter
CUST_33437_PI429285431	0.90052134	A	0.89032936	A	1.00708955494609	0	lncRNA	35015-1_{1..762}	n340168|BC033977|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2629|NULL|-0.9812260|-0.2723559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340168|BC033977|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2629|NULL|-0.9812260|-0.2723559	chr10	127262939	127263700	+	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-60.50"	NA	inter
CUST_39445_PI429285431	1.5177758	A	1.5900635	A	0.95112858483615	0	lncRNA	40390-1_{1..1138}	n386788|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010uan.1||8.8970000|-0.1023023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386788|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010uan.1||8.8970000|-0.1023023	chr15	 28896566	 28897703	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42857_PI429285431	7.7048388	P	7.8024893	P	0.934553719717033	0	lncRNA	45906-1_{1..131}	ENST00000391305 ncrna:snoRNA chromosome:GRCh37:11:8706986:8707116:1 gene:ENSG00000212607 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391305 ncrna:snoRNA chromosome:GRCh37:11:8706986:8707116:1 gene:ENSG00000212607 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	  8706986	  8707116	+	ENSG00000212607	ENST00000391305	NA	NA	ST5	NA	chr11:8714899-8717116	inter
CUST_27445_PI429285431	4.9177012	P	5.011695	P	0.936925473312725	0	lncRNA	29014-1_{1..834}	n324620|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039634|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039634|-1.2727400|-0.3358085	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324620|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039634|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039634|-1.2727400|-0.3358085	chr6	  2582168	  2583001	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15228_PI429285431	2.4852636	A	2.620905	A	0.910265053792912	0	lncRNA	16898-1_{1..1337}	lnc-STK35-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STK35-2:2	chr20	  2217066	  2218402	+	lnc-STK35-2	lnc-STK35-2:2	XLOC_013437	linc-TGM3-1	NA	NA	NA	inter
LNCA_21_P0001829	0.91429335	A	0.9008994	A	1.00932720848709	0	lncRNA	ENST00000438178	NA	NA	NA	NA	XLOC_001361	NA	ENST00000438178	NA	NA	"BROAD Institute lincRNA (XLOC_001361), lincRNA [TCONS_00002829]"	chr2:15705254-15705313	hs|2p24.3	Agilent_HUMAN_G3V2	ENST00000438178	ENST00000438178	chr2	 15705254	 15705313	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23240_PI429285431	1.3665189	A	0.9034037	A	1.37851522378694	0	lncRNA	24812-1_{1..502}	lnc-CCNE2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCNE2-1:2	chr8	 95804959	 95805460	-	lnc-CCNE2-1	lnc-CCNE2-1:2	ENSG00000254307.1	KB-1608C10.2	DPY19L4	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80chr8:95794959-95806076"	NA	inner
CUST_33688_PI429285431	1.2435205	A	1.654153	A	0.752293484203455	0	lncRNA	35249-1_{1..2596}	n340461|BC069263|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2922|NULL|-1.0483800|-0.2299535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340461|BC069263|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2922|NULL|-1.0483800|-0.2299535	chr17	  2865540	  2868135	-	NA	NA	NA	NA	RAP1GAP2	"hg19_refFlat_RAP1GAP2:range=chr17:2699822-29357135'pad=0,hg19_refFlat_RAP1GAP2:range=chr17:2699822-29357135'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60chr17:2855540-2879189"	NA	inner
LNCA_19_P00322936	1.9780321	A	1.7198666	A	1.19595698413921	0	lncRNA	AK055081	NA	AK055081	NA	NA	XLOC_010376	NA	NA	THC2515632	NA	"BROAD Institute lincRNA (XLOC_010376), lincRNA [TCONS_00021548]"	chr13:45950558-45950617	hs|13q14.13	Agilent_HUMAN_G3V2	AK055081	AK055081	chr13	 45950558	 45950617	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13008_PI429285431	0.8961258	A	0.8929277	A	1.00221921281382	0	lncRNA	14634-1_{1..607}	lnc-DMRT2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRT2-2:2	chr9	  1328425	  1329031	+	lnc-DMRT2-2	lnc-DMRT2-2:2	XLOC_007263	linc-SMARCA2-3	NA	NA	NA	inter
CUST_3297_PI429285431	0.9043593	A	0.90886575	A	0.996881240354447	0	lncRNA	3275-1_{1..630}	"transcript_id ""ENST00000522815.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522815.1"" | genecode_v17"	chr8	126479181	126479810	+	ENSG00000253111.1	ENST00000522815.1	RP11-136O12.2	RP11-136O12.2-001	NA	NA	NA	inter
CUST_12748_PI429285431	3.1907606	A	3.0331368	A	1.11544841787208	0	lncRNA	14373-1_{1..690}	lnc-ZNF462-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-ZNF462-1:6	chr9	109464790	109465479	+	lnc-ZNF462-1	lnc-ZNF462-1:6	XLOC_007502	linc-ZNF462-1	NA	NA	NA	inter
CUST_23863_PI429285431	1.8274608	A	3.2707186	P	0.36773596862281	0	lncRNA	25425-1_{1..463}	lnc-RNASE10-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNASE10-2:4	chr14	 21074001	 21074463	+	lnc-RNASE10-2	lnc-RNASE10-2:4	ENSG00000258573.1	RP11-14J7.6	NA	"hg19_refFlat_RNASE12:range=chr14:21058439-210588825'pad=0,hg19_refFlat_RNASE12:range=chr14:21058439-210588825'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00"	NA	inter
CUST_9784_PI429285431	6.223795	P	6.6297846	P	0.754718424802532	0	lncRNA	11300-1_{1..476}	lnc-RBP5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RBP5-1:3	chr12	  7282309	  7282784	-	lnc-RBP5-1	lnc-RBP5-1:3	XLOC_010001	linc-RBP5-2	CLSTN3	NA	chr12:7282967-7292622	inter
LNCA_21_P0006259	3.4355688	P	3.3649747	P	1.05014904464746	0	lncRNA	TCONS_00016286	NA	NA	NA	NA	XLOC_007661	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007661), lincRNA [TCONS_00016286]"	chr9:26716465-26716406	hs|9p21.2	Agilent_HUMAN_G3V2	TCONS_00016286	TCONS_00016286	chr9	 26716406	 26716465	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21049_PI429285431	0.9008914	A	0.8938639	A	1.00488297486575	0	lncRNA	22676-1_{1..392}	lnc-ABHD12B-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ABHD12B-5:1	chr14	 51289900	 51290291	+	lnc-ABHD12B-5	lnc-ABHD12B-5:1	ENSG00000258843.1	RP11-286O18.1	NIN	"hg19_refFlat_NIN:range=chr14:51194407-512887745'pad=0,hg19_refFlat_NIN:range=chr14:51194407-512887745'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_NIN:range=chr14:51192590-512887745'pad=0,hg19_refFlat_NIN:range=chr14:51192590-512887745'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_NIN:range=chr14:51190181-512887745'pad=0,hg19_refFlat_NIN:range=chr14:51190181-512887745'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50chr14:51279900-51297839"	NA	inner
CUST_46160_PI429285431	2.7736876	A	3.3122246	P	0.688468713643403	0	lncRNA	50409-1_{1..2261}	"gi|333609246|ref|NR_038256.1| Homo sapiens uncharacterized LOC100507206 (LOC100507206), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|333609246|ref|NR_038256.1| Homo sapiens uncharacterized LOC100507206 (LOC100507206), non-coding RNA"	Chr12	127221553	127223813	+	100507206	NR_038256.1	NA	NA	NA	NA	NA	inter
CUST_45237_PI429285431	2.277374	A	0.907282	A	2.58487049202315	0	lncRNA	49693-1_{1..3000}	"gi|215490109|ref|NR_024522.1| Homo sapiens transmembrane protein 67 (TMEM67), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|215490109|ref|NR_024522.1| Homo sapiens transmembrane protein 67 (TMEM67), transcript variant 3, non-coding RNA"	Chr8	 94767072	 94770071	+	91147	NR_024522.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20"	NA	inter
CUST_24735_PI429285431	0.899722	A	0.89813423	A	1.00110116413539	0	lncRNA	26280-2_{3001..5492}	lnc-DGCR6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-DGCR6-2:1	chr22	 18980093	 18982584	+	lnc-DGCR6-2	lnc-DGCR6-2:1	ENSG00000237517.3	DGCR5	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00"	NA	inter
CUST_47482_PI429285431	7.0997376	P	7.017657	P	1.05854353157623	0	lncRNA	51503-1_{1..1397}	"gi|298358767|ref|NR_033734.1| Homo sapiens crystallin, beta B2 pseudogene 1 (CRYBB2P1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298358767|ref|NR_033734.1| Homo sapiens crystallin, beta B2 pseudogene 1 (CRYBB2P1), transcript variant 2, non-coding RNA"	Chr22	 25844054	 25845450	+	1416	NR_033734.1	NA	NA	NA	NA	NA	inter
CUST_7153_PI429285431	1.8318061	A	1.5448414	A	1.22007065710168	0	lncRNA	7090-1_{1..344}	"transcript_id ""ENST00000417334.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000417334.1"" | genecode_v17"	chrY	 27874637	 27874980	+	ENSG00000231141.1	ENST00000417334.1	TTTY3	TTTY3-001	NA	NA	NA	inter
CUST_2930_PI429285431	4.142602	P	4.300693	P	0.896210168081364	0	lncRNA	2911-1_{1..431}	"transcript_id ""ENST00000461420.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000461420.1"" | genecode_v17"	chr7	128506633	128507063	+	ENSG00000239815.1	ENST00000461420.1	RP11-309L24.4	RP11-309L24.4-001	FLNC	NA	chr7:128496633-128499328	inner
CUST_40416_PI429285431	5.7805724	P	6.3006997	P	0.697310301447918	0	lncRNA	41201-1_{1..1895}	n409282|NR_033489_2|lncRNA|Homosapiens||RefGeneNoncode|NR_033489_2||1.1795400|-0.2597639	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409282|NR_033489_2|lncRNA|Homosapiens||RefGeneNoncode|NR_033489_2||1.1795400|-0.2597639	chr6	  2948368	  2950262	-	NA	NA	NA	NA	SERPINB6	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60chr6:2948393-2972399"	NA	inner
CUST_34887_PI429285431	9.510341	P	9.055571	P	1.37056428692428	0	lncRNA	36312-1_{1..461}	n341802|AF086191|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4280|NULL|-0.8795050|-0.3945896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341802|AF086191|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4280|NULL|-0.8795050|-0.3945896	chr9	137660929	137661389	+	NA	NA	NA	NA	COL5A1	NA	chr9:137650929-137671381	inner
CUST_46861_PI429285431	5.738867	P	4.743872	P	1.99307361817697	0	lncRNA	50992-1_{1..3000}	"gi|339276051|ref|NR_040116.1| Homo sapiens N-ethylmaleimide-sensitive factor (NSF), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|339276051|ref|NR_040116.1| Homo sapiens N-ethylmaleimide-sensitive factor (NSF), transcript variant 2, non-coding RNA"	Chr17	 44668035	 44671034	+	4905	NR_040116.1	NA	NA	NA	NA	NA	inter
CUST_47071_PI429285431	8.310714	P	7.926715	P	1.30495404316343	0	lncRNA	51156-2_{3001..3139}	"gi|385648261|ref|NR_047665.1| Homo sapiens epidermal growth factor receptor pathway substrate 15-like 1 (EPS15L1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385648261|ref|NR_047665.1| Homo sapiens epidermal growth factor receptor pathway substrate 15-like 1 (EPS15L1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NR_047665.1	NA	NA	NA	NA	NA	Unknown
CUST_21468_PI429285431	0.9081446	A	0.8957375	A	1.00863703215849	0	lncRNA	23087-1_{1..512}	lnc-GPR151-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR151-1:1	chr5	145755668	145756179	-	lnc-GPR151-1	lnc-GPR151-1:1	ENSG00000250025.1	CTC-359M8.1	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70"	NA	inter
CUST_52222_PI429285431	17.337307	P	17.364397	P	0.981397839160731	0	lncRNA	55735-1_{1..312}	hg19_lincRNAsTranscripts_TCONS_00030038 range=chrUn_gl000220:112025-156152 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00030038 range=chrUn_gl000220:112025-156152 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrUn_gl000220	   112025	   112336	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34236_PI429285431	1.955428	A	0.89645654	A	2.08344564201092	0	lncRNA	35743-2_{3001..3614}	n341094|AK022848|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3560|NULL|-1.0210700|-0.5190574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341094|AK022848|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3560|NULL|-1.0210700|-0.5190574	chr11	 89930673	 89931286	-	NA	NA	NA	NA	NAALAD2	NA	chr11:89917673-89925779	inter
CUST_2642_PI429285431	1.2620622	A	1.7779961	A	0.699340082319792	0	lncRNA	2629-1_{1..737}	"transcript_id ""ENST00000411615.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000411615.1"" | genecode_v17"	chr6	138051307	138052043	-	ENSG00000234956.1	ENST00000411615.1	RP11-356I2.1	RP11-356I2.1-001	NA	NA	NA	inter
CUST_9269_PI429285431	0.9231429	A	1.4459482	A	0.696017121094341	0	lncRNA	10774-1_{1..528}	lnc-CPN2-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPN2-4:5	chr3	193775426	193775953	-	lnc-CPN2-4	lnc-CPN2-4:5	ENSG00000230102	RP11-407B7.1	NA	NA	NA	inter
CUST_9934_PI429285431	2.201292	A	2.6508865	A	0.732248633039931	0	lncRNA	11457-1_{1..575}	lnc-AP000679.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP000679.2.1-2:1	chr11	119821382	119821956	+	lnc-AP000679.2.1-2	lnc-AP000679.2.1-2:1	XLOC_009303	linc-OAF-2	NA	NA	NA	inter
CUST_31088_PI429285431	3.4153907	P	2.6749072	A	1.67073566981669	0	lncRNA	32879-1_{1..302}	n337367|DQ648895|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393013|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393013|1.0104100|-0.2334720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337367|DQ648895|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393013|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393013|1.0104100|-0.2334720	chr2	 47639671	 47639972	+	NA	NA	NA	NA	MSH2	NA	chr2:47630263-47667022	inner
CUST_4527_PI429285431	1.6475357	A	1.3447376	A	1.2335345289935	0	lncRNA	4475-1_{1..317}	"transcript_id ""ENST00000542821.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000542821.1"" | genecode_v17"	chr12	131295366	131295682	-	ENSG00000256299.1	ENST00000542821.1	RP11-989F5.3	RP11-989F5.3-001	STX2	NA	chr12:131285366-131307167	inner
CUST_37376_PI429285431	0.9110616	A	1.5293008	A	0.651465552213417	0	lncRNA	38480-1_{1..1267}	n345825|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1374|NULL|-1.3224600|-0.3751790	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345825|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1374|NULL|-1.3224600|-0.3751790	chr12	 65376819	 65378085	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4631_PI429285431	1.7151929	A	1.0558729	A	1.57933804294126	0	lncRNA	4577-1_{1..419}	"transcript_id ""ENST00000423739.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423739.1"" | genecode_v17"	chr13	 60788486	 60788904	-	ENSG00000227336.1	ENST00000423739.1	LINC00434	LINC00434-001	NA	NA	NA	inter
CUST_5993_PI429285431	0.91311026	A	0.9054103	A	1.00535147381895	0	lncRNA	5919-1_{1..2934}	"transcript_id ""ENST00000374945.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000374945.1"" | genecode_v17"	chr17	 76257430	 76260363	-	ENSG00000204277.1	ENST00000374945.1	RP11-219G17.4	RP11-219G17.4-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-60.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70"	NA	inter
CUST_25178_PI429285431	0.90754205	A	0.9026117	A	1.00342330436974	0	lncRNA	26709-1_{1..316}	lnc-NRBP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NRBP2-1:1	chr8	144916134	144916449	-	lnc-NRBP2-1	lnc-NRBP2-1:1	ENSG00000255343.1	RP11-299M14.2	NRBP2	NA	chr8:144915755-144923146	inner
CUST_42179_PI429285431	5.3028555	P	5.691749	P	0.763715124483433	0	lncRNA	44234-1_{1..148}	ENST00000581079 ncrna:miRNA chromosome:GRCh37:9:137740819:137740966:-1 gene:ENSG00000264877 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581079 ncrna:miRNA chromosome:GRCh37:9:137740819:137740966:-1 gene:ENSG00000264877 gene_biotype:miRNA transcript_biotype:miRNA	chr9	137740819	137740966	-	ENSG00000264877	ENST00000581079	NA	NA	COL5A1	NA	chr9:137730819-137736689	inter
CUST_16766_PI429285431	0.90313005	A	1.0213897	A	0.921298359991409	0	lncRNA	18474-1_{1..296}	lnc-EPHA6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPHA6-2:1	chr3	 96232300	 96232595	+	lnc-EPHA6-2	lnc-EPHA6-2:1	XLOC_002729	linc-EPHA6-2	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
CUST_43800_PI429285431	2.465766	A	1.2981509	A	2.24640040366658	0	lncRNA	48528-2_{3001..3373}	"gi|109638755|ref|NR_003093.1| Homo sapiens E2F transcription factor 6 (E2F6), transcript variant c, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|109638755|ref|NR_003093.1| Homo sapiens E2F transcription factor 6 (E2F6), transcript variant c, non-coding RNA"	NA	NA	NA	NA	NA	NR_003093.1	NA	NA	NA	NA	NA	Unknown
CUST_23067_PI429285431	3.374887	P	3.6943164	P	0.801386771224791	0	lncRNA	24638-1_{1..408}	lnc-TGIF1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TGIF1-2:5	chr18	  3597174	  3597581	+	lnc-TGIF1-2	lnc-TGIF1-2:5	ENSG00000177337.3	RP11-874J12.2	DLGAP1	NA	chr18:3587174-3607370	inner
CUST_5004_PI429285431	10.002113	P	9.657663	P	1.26966685396221	0	lncRNA	4947-1_{1..3000}	"transcript_id ""ENST00000398461.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000398461.1"" | genecode_v17"	chr14	101299306	101302305	+	ENSG00000214548.9	ENST00000398461.1	MEG3	MEG3-011	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90"	NA	inter
CUST_3638_PI429285431	1.6130217	A	1.8213729	A	0.865525842068995	0	lncRNA	3608-1_{1..517}	"transcript_id ""ENST00000456082.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456082.1"" | genecode_v17"	chr10	 29032674	 29033190	+	ENSG00000236716.1	ENST00000456082.1	RP11-478H13.1	RP11-478H13.1-001	NA	NA	NA	inter
CUST_52161_PI429285431	13.7389555	P	13.373217	P	1.28854105095859	0	lncRNA	55683-2_{3001..3271}	hg19_lincRNAsTranscripts_TCONS_l2_00017933 range=chr22:23738063-23744587 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017933 range=chr22:23738063-23744587 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 23741063	 23741333	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13628_PI429285431	2.2084785	A	2.3314018	A	0.91832498318955	0	lncRNA	15268-1_{1..3000}	lnc-WDR26-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR26-1:2	chr1	224803314	224806313	-	lnc-WDR26-1	lnc-WDR26-1:2	XLOC_001228	linc-WDR26-2	CNIH3	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20chr1:224804179-224813762"	NA	inter
CUST_5295_PI429285431	4.0159845	P	4.1950607	P	0.883268397942429	0	lncRNA	5235-1_{1..786}	"transcript_id ""ENST00000558754.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558754.1"" | genecode_v17"	chr15	 89921794	 89922579	+	ENSG00000255571.2	ENST00000558754.1	CTD-2335A18.1	CTD-2335A18.1-008	NA	NA	NA	inter
CUST_21965_PI429285431	6.8214393	P	6.5826263	P	1.18002138079482	0	lncRNA	23573-1_{1..1695}	lnc-FAM168A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM168A-2:1	chr11	 73019717	 73021411	-	lnc-FAM168A-2	lnc-FAM168A-2:1	ENSG00000257038.1	RP11-800A3.7	ARHGEF17	"hg19_refFlat_ARHGEF17:range=chr11:73019684-730788255'pad=0,hg19_refFlat_ARHGEF17:range=chr11:73019684-730788255'pad=0 3'pad=0 strand=+ repeatMasking=none,-110.80chr11:73019663-73030406"	NA	inner
CUST_33648_PI429285431	11.848341	P	11.182963	P	1.58598376181255	0	lncRNA	35212-1_{1..2269}	n340411|AK093557|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2872|NULL|1.0241600|-0.2180661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340411|AK093557|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2872|NULL|1.0241600|-0.2180661	chr17	   289772	   292040	-	NA	NA	NA	NA	FAM101B	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr17:289769-295731"	NA	inner
CUST_33679_PI429285431	1.1903344	A	1.4713593	A	0.823006140592917	0	lncRNA	35240-1_{1..1155}	n340448|AJ550616|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2909|NULL|0.7918980|-0.0839657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340448|AJ550616|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2909|NULL|0.7918980|-0.0839657	chr17	  1957447	  1958601	+	NA	NA	NA	NA	SMG6	NA	chr17:1963133-1970011	inner
CUST_40059_PI429285431	2.1627688	A	2.7981057	P	0.643790458424688	0	lncRNA	40909-1_{1..815}	n407264|NR_026732|lncRNA|Homosapiens||RefGeneNoncode|NR_026732||1.2966600|-0.2891655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407264|NR_026732|lncRNA|Homosapiens||RefGeneNoncode|NR_026732||1.2966600|-0.2891655	chr14	 29241909	 29242723	+	NA	NA	NA	NA	FOXG1	NA	chr14:29236287-29238871	inter
CUST_6697_PI429285431	1.0988736	A	0.9181241	A	1.13347258702751	0	lncRNA	6646-1_{1..524}	"transcript_id ""ENST00000428529.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428529.1"" | genecode_v17"	chr20	 42523360	 42523883	+	ENSG00000233277.1	ENST00000428529.1	RP5-1030M6.3	RP5-1030M6.3-001	NA	NA	NA	inter
CUST_9564_PI429285431	0.89563406	A	0.9055048	A	0.993181476741537	0	lncRNA	11079-1_{1..1012}	lnc-CYP7B1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CYP7B1-4:1	chr8	 66084569	 66085580	-	lnc-CYP7B1-4	lnc-CYP7B1-4:1	XLOC_007103	linc-CYP7B1-3	NA	NA	NA	inter
CUST_7384_PI429285431	1.7240461	A	1.5049181	A	1.16402980584999	0	lncRNA	9030-1_{1..1414}	lnc-ITIH2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ITIH2-3:1	chr10	  7533656	  7535069	+	lnc-ITIH2-3	lnc-ITIH2-3:1	ENSG00000256497	AL139125.1	NA	NA	NA	inter
CUST_996_PI429285431	0.91532075	A	0.9197348	A	0.996945089452	0	lncRNA	985-1_{1..2112}	"transcript_id ""ENST00000424321.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424321.1"" | genecode_v17"	chr2	105363096	105365207	-	ENSG00000234177.1	ENST00000424321.1	AC068057.2	AC068057.2-002	NA	NA	NA	inter
CUST_40408_PI429285431	0.8993122	A	0.9090011	A	0.993306667094786	0	lncRNA	41193-1_{1..2270}	n409274|NR_033488|lncRNA|Homosapiens||RefGeneNoncode|NR_033488||0.1164470|-0.2644259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409274|NR_033488|lncRNA|Homosapiens||RefGeneNoncode|NR_033488||0.1164470|-0.2644259	chr6	  2940297	  2942566	-	NA	NA	NA	NA	SERPINB6	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10chr6:2948393-2966422"	NA	inner
LNCA_21_P0004383	2.4581592	A	1.9652772	A	1.40725326944907	0	lncRNA	TCONS_00010323	NA	NA	NA	NA	XLOC_004804	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004804), lincRNA [TCONS_00010323]"	chr5:43013866-43013807	hs|5p12	Agilent_HUMAN_G3V2	TCONS_00010323	TCONS_00010323	chr5	 43013807	 43013866	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19164_PI429285431	10.449089	P	10.370113	P	1.05626805362434	0	lncRNA	20833-1_{1..2524}	lnc-NGDN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,"	>lnc-NGDN-1:1	NA	NA	     2523	NA	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70"	NA	Unknown
CUST_45707_PI429285431	2.3106203	P	2.6145542	A	0.810040586434584	0	lncRNA	50076-1_{1..1302}	"gi|375151563|ref|NR_046316.1| Homo sapiens NS3BP (NS3BP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375151563|ref|NR_046316.1| Homo sapiens NS3BP (NS3BP), non-coding RNA"	Chr11	   779454	   780755	+	171391	NR_046316.1	NA	NA	NA	NA	NA	inter
CUST_36642_PI429285431	11.094652	P	11.58219	P	0.713241226203587	0	lncRNA	37832-1_{1..789}	n345136|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_685|NULL|-1.3108600|-0.1095802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345136|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_685|NULL|-1.3108600|-0.1095802	chr11	 12295969	 12296757	-	NA	NA	NA	NA	MICALCL	NA	chr11:12308447-12312646	inter
CUST_21856_PI429285431	0.9167581	A	0.91213	A	1.00321310545886	0	lncRNA	23466-1_{1..2927}	lnc-ANGPTL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-ANGPTL1-1:1	chr1	178468669	178471595	-	lnc-ANGPTL1-1	lnc-ANGPTL1-1:1	ENSG00000188585.5	LINC00083	NA	NA	NA	inter
CUST_17185_PI429285431	0.9222907	A	0.9266453	A	0.996986172012804	0	lncRNA	18896-1_{1..3000}	lnc-AC092329.1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092329.1-1:7	chr19	 23444422	 23447421	-	lnc-AC092329.1-1	lnc-AC092329.1-1:7	XLOC_013274	linc-ZNF99-6	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30"	NA	inter
CUST_34130_PI429285431	4.2694516	P	4.4468517	P	0.8842951613486	0	lncRNA	35651-1_{1..1594}	n340966|AK026280|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3432|NULL|-1.0490400|-0.3634714	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340966|AK026280|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3432|NULL|-1.0490400|-0.3634714	chr11	  8697264	  8698857	-	NA	NA	NA	NA	RPL27A	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60chr11:8703995-8708858"	NA	inter
CUST_3064_PI429285431	5.182975	P	6.9282823	P	0.298270396165255	0	lncRNA	3043-1_{1..582}	"transcript_id ""ENST00000522460.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522460.1"" | genecode_v17"	chr8	 34085957	 34086538	+	ENSG00000253108.1	ENST00000522460.1	RP1-84O15.2	RP1-84O15.2-001	NA	NA	NA	inter
CUST_39813_PI429285431	11.200016	P	10.719321	P	1.3954157282508	0	lncRNA	40723-1_{1..2272}	n406247|NR_003700|lncRNA|Homosapiens||RefGeneNoncode|NR_003700||7.4027600|-0.0928194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406247|NR_003700|lncRNA|Homosapiens||RefGeneNoncode|NR_003700||7.4027600|-0.0928194	chr22	 21827286	 21829557	-	NA	NA	NA	NA	TMEM191C	NA	chr22:21821459-21824224	inter
CUST_50950_PI429285431	3.7946684	P	4.437346	P	0.640523052776086	0	lncRNA	54591-1_{1..273}	hg19_lincRNAsTranscripts_TCONS_l2_00006293 range=chr12:62072122-62076090 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006293 range=chr12:62072122-62076090 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 62072122	 62072394	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8778_PI429285431	0.92112494	A	0.91392094	A	1.00500592024904	0	lncRNA	10319-2_{3001..3860}	lnc-ADD1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ADD1-1:4	chr4	  2954880	  2955739	+	lnc-ADD1-1	lnc-ADD1-1:4	ENSG00000249673	RP11-520M5.5	NOP14	"hg19_refFlat_NOP14:range=chr4:2940558-29650465'pad=0,hg19_refFlat_NOP14:range=chr4:2940558-29650465'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr4:2941880-2962794"	NA	inner
CUST_20760_PI429285431	6.8109236	P	7.216199	P	0.755092137420569	0	lncRNA	22393-1_{1..479}	lnc-YIF1A-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YIF1A-4:1	chr11	 66032823	 66033301	-	lnc-YIF1A-4	lnc-YIF1A-4:1	ENSG00000254855.1	RP11-867G23.1	KLC2	"hg19_refFlat_KLC2:range=chr11:66026066-660344275'pad=0,hg19_refFlat_KLC2:range=chr11:66026066-660344275'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.70chr11:66024765-66035332"	NA	inner
CUST_847_PI429285431	3.2981417	P	3.116728	A	1.13399454475234	0	lncRNA	841-1_{1..622}	"transcript_id ""ENST00000450854.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450854.1"" | genecode_v17"	chr2	 38430505	 38431126	-	ENSG00000227292.1	ENST00000450854.1	AC009229.5	AC009229.5-001	NA	NA	NA	inter
CUST_2672_PI429285431	0.9077732	A	1.1738279	A	0.831590567895402	0	lncRNA	2658-1_{1..244}	"transcript_id ""ENST00000417654.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417654.1"" | genecode_v17"	chr6	153125888	153126131	-	ENSG00000224893.1	ENST00000417654.1	RP1-200K18.1	RP1-200K18.1-002	NA	NA	NA	inter
LNCA_21_P0009235	0.92839456	A	0.921507	A	1.00478550693277	0	lncRNA	TCONS_00025347	NA	NA	NA	NA	XLOC_012167	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012167), lincRNA [TCONS_00025347]"	chr17:30019196-30023945	hs|17q11.2	Agilent_HUMAN_G3V2	TCONS_00025347	TCONS_00025347	chr17	 30019196	 30023945	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6010_PI429285431	1.3491726	A	2.2771819	A	0.525583066483221	0	lncRNA	5935-1_{1..665}	"transcript_id ""ENST00000572077.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000572077.1"" | genecode_v17"	chr17	 79349801	 79350465	-	ENSG00000262223.2	ENST00000572077.1	RP11-1055B8.3	RP11-1055B8.3-001	LOC100130370	NA	chr17:79352934-79357447	inter
CUST_12041_PI429285431	0.9013773	A	0.89950776	A	1.00129670637758	0	lncRNA	13626-1_{1..530}	lnc-LRRC4C-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC4C-5:3	chr11	 38667873	 38668402	-	lnc-LRRC4C-5	lnc-LRRC4C-5:3	XLOC_009418	linc-RAG2-4	NA	NA	NA	inter
CUST_11243_PI429285431	1.632324	A	0.918604	A	1.64002749298239	0	lncRNA	12801-1_{1..566}	lnc-ADAM23-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAM23-1:1	chr2	207505547	207506112	+	lnc-ADAM23-1	lnc-ADAM23-1:1	XLOC_001821	linc-LOC200726	LOC200726	NA	chr2:207507142-207514173	inter
LNCA_21_P0014694	2.5621715	A	2.0295236	A	1.44658179419518	0	lncRNA	XR_111767	XR_111767	XR_111767	NA	Hs.720286	LOC100509487	uncharacterized LOC100509487	NA	THC2461686	NA	"PREDICTED: Homo sapiens hypothetical LOC100509487 (LOC100509487), miscRNA [XR_111767]"	chr18:11640817-11640758	hs|18p11.21	Agilent_HUMAN_G3V2	XR_111767	XR_111767	chr18	 11640758	 11640817	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49886_PI429285431	2.2947972	A	1.7113266	A	1.49844964158841	0	lncRNA	53637-1_{1..430}	hg19_lincRNAsTranscripts_TCONS_l2_00026699 range=chr7:76682275-76685964 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026699 range=chr7:76682275-76685964 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 76682275	 76682704	-	NA	NA	NA	NA	LOC100505767	NA	chr7:76682095-76689829	inter
CUST_47362_PI429285431	2.222308	A	4.9629827	P	0.149614851873974	0	lncRNA	51412-1_{1..524}	"gi|219521890|ref|NR_026553.1| Homo sapiens long intergenic non-protein coding RNA 161 (LINC00161), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|219521890|ref|NR_026553.1| Homo sapiens long intergenic non-protein coding RNA 161 (LINC00161), non-coding RNA"	Chr21	 29911640	 29912163	+	118421	NR_026553.1	NA	NA	NA	NA	NA	inter
CUST_45506_PI429285431	0.916684	A	0.9051986	A	1.00799284622764	0	lncRNA	49916-2_{3001..3976}	"gi|359807117|ref|NR_045609.1| Homo sapiens KIN, antigenic determinant of recA protein homolog (mouse) (KIN), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|359807117|ref|NR_045609.1| Homo sapiens KIN, antigenic determinant of recA protein homolog (mouse) (KIN), transcript variant 3, non-coding RNA"	Chr10	  7795925	  7796900	-	22944	NR_045609.1	NA	NA	NA	NA	NA	inter
CUST_37960_PI429285431	4.575776	P	4.728785	P	0.89937270155138	0	lncRNA	39048-1_{1..581}	n346507|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2057|NULL|-1.3378400|-0.3202920	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346507|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2057|NULL|-1.3378400|-0.3202920	chr9	 22046279	 22046859	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4482_PI429285431	1.4048057	A	1.5068235	A	0.931728933543812	0	lncRNA	4431-1_{1..1688}	"transcript_id ""ENST00000537374.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537374.1"" | genecode_v17"	chr12	127210816	127212503	+	ENSG00000189238.4	ENST00000537374.1	RP11-173C20.1	RP11-173C20.1-001	NA	NA	NA	inter
CUST_12934_PI429285431	1.58779	A	2.49902	A	0.531731558995884	0	lncRNA	14562-1_{1..1125}	lnc-DAAM2-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DAAM2-3:3	chr6	 40347021	 40348145	+	lnc-DAAM2-3	lnc-DAAM2-3:3	XLOC_005285	linc-TSPO2-2	NA	NA	NA	inter
CUST_26422_PI429285431	0.9148532	A	0.9164002	A	0.998928276018475	0	lncRNA	27929-1_{1..557}	lnc-RARS-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RARS-4:6	chr5	168445398	168445954	+	lnc-RARS-4	lnc-RARS-4:6	ENSG00000248222.1	CTB-174D11.1	SLIT3	NA	chr5:168435398-168455707	inner
CUST_51399_PI429285431	9.3002	P	9.000925	P	1.23052587967207	0	lncRNA	54980-3_{6001..6328}	hg19_lincRNAsTranscripts_TCONS_l2_00009671 range=chr16:31711933-31724203 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009671 range=chr16:31711933-31724203 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 31717933	 31718260	+	NA	NA	NA	NA	ZNF720	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr16:31724550-31734203"	NA	inter
LNCA_21_P0003280	0.9237793	A	0.9122998	A	1.00798872398041	0	lncRNA	TCONS_00007127	NA	NA	NA	NA	XLOC_003061	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003061), lincRNA [TCONS_00007127]"	chr3:16283861-16283802	hs|3p25.1	Agilent_HUMAN_G3V2	TCONS_00007127	TCONS_00007127	chr3	 16283802	 16283861	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46030_PI429285431	3.9169497	P	3.9439938	P	0.981429063276799	0	lncRNA	50311-1_{1..1453}	"gi|310122895|ref|XR_110349.1| PREDICTED: Homo sapiens uncharacterized LOC100293962 (LOC100293962), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310122895|ref|XR_110349.1| PREDICTED: Homo sapiens uncharacterized LOC100293962 (LOC100293962), misc_RNA"	NA	NA	NA	NA	NA	XR_110349.1	NA	NA	NA	NA	NA	Unknown
CUST_19953_PI429285431	2.5044777	A	2.5050137	A	0.999628542118788	0	lncRNA	21608-1_{1..3000}	lnc-XXbac-B461K10.4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XXbac-B461K10.4.1-1:1	chr22	 18293469	 18296468	-	lnc-XXbac-B461K10.4.1-1	lnc-XXbac-B461K10.4.1-1:1	ENSG00000093100.13	XXbac-B461K10.4	MICAL3	NA	chr22:18283469-18304263	inner
CUST_10420_PI429285431	3.5478954	P	4.364481	P	0.567784118071089	0	lncRNA	11947-1_{1..970}	lnc-C16orf95-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C16orf95-1:3	chr16	 87325290	 87326259	-	lnc-C16orf95-1	lnc-C16orf95-1:3	XLOC_012053	linc-MTHFSD-2	NA	NA	NA	inter
LNCA_19_P00322264	0.9223192	A	4.2510586	P	0.0995289890585564	0	lncRNA	ENST00000514050	NA	NA	NA	NA	XLOC_l2_011173	NA	ENST00000514050	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011173), lincRNA [TCONS_l2_00021909]"	chr4:82524033-82523974	hs|4q21.22	Agilent_HUMAN_G3V2	ENST00000514050	ENST00000514050	chr4	 82523974	 82524033	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010037	0.92194724	A	0.9096775	A	1.00854100369546	0	lncRNA	TCONS_00028387	NA	NA	NA	NA	XLOC_013742	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013742), lincRNA [TCONS_00028387]"	chr20:38284882-38284085	hs|20q12	Agilent_HUMAN_G3V2	TCONS_00028387	TCONS_00028387	chr20	 38284085	 38284882	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7043_PI429285431	2.08325	A	2.1563542	A	0.950590441465749	0	lncRNA	6988-1_{1..1976}	"transcript_id ""ENST00000562814.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562814.1"" | genecode_v17"	chrX	 39696790	 39698765	-	ENSG00000261435.1	ENST00000562814.1	MIR1587	MIR1587-001	NA	NA	NA	inter
CUST_24653_PI429285431	6.6038218	P	6.711974	P	0.927775593765575	0	lncRNA	26202-1_{1..987}	lnc-RNPEP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNPEP-1:1	chr1	201984014	201985000	+	lnc-RNPEP-1	lnc-RNPEP-1:1	ENSG00000249007.1	RP11-510N19.5	ELF3	NA	chr1:201979690-201986316	inner
CUST_36155_PI429285431	2.8838532	A	2.3356535	A	1.4622598425809	0	lncRNA	37430-1_{1..2741}	n344717|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_266|NULL|-1.5926600|-0.2539158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344717|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_266|NULL|-1.5926600|-0.2539158	chr1	155959024	155961764	-	NA	NA	NA	NA	SSR2	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10chr1:155978839-155982476"	NA	inter
CUST_42253_PI429285431	15.212788	P	14.293574	P	1.89108472390745	0	lncRNA	44390-1_{1..954}	ENST00000389680 mt_genbank_import:Mt_rRNA chromosome:GRCh37:MT:648:1601:1 gene:ENSG00000211459 gene_biotype:Mt_rRNA transcript_biotype:Mt_rRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"NONCODERv3,ensembl.GRCh37.72,"	>ENST00000389680 mt_genbank_import:Mt_rRNA chromosome:GRCh37:MT:648:1601:1 gene:ENSG00000211459 gene_biotype:Mt_rRNA transcript_biotype:Mt_rRNA	chrMT	      648	     1601	+	ENSG00000211459	ENST00000389680	NA	NA	NA	NA	NA	Unknown
CUST_20515_PI429285431	0.9116675	A	0.9924648	A	0.945534955962478	0	lncRNA	22157-1_{1..375}	lnc-PRKD1-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRKD1-6:2	chr14	 29299332	 29299706	-	lnc-PRKD1-6	lnc-PRKD1-6:2	ENSG00000257748.1	RP11-966I7.3	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30"	NA	inter
CUST_18506_PI429285431	7.79091	P	8.238829	P	0.733099537255231	0	lncRNA	20221-1_{1..424}	lnc-CENPP-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CENPP-3:5	chr9	 94907167	 94907590	+	lnc-CENPP-3	lnc-CENPP-3:5	ENSG00000225511	C9orf44	NA	NA	NA	inter
CUST_32999_PI429285431	2.657323	A	2.2712724	A	1.30681108719789	0	lncRNA	34614-1_{1..1510}	n339681|BC029957|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2126|NULL|2.1760200|-0.0460439	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339681|BC029957|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2126|NULL|2.1760200|-0.0460439	chr20	 42788791	 42790300	-	NA	NA	NA	NA	JPH2	NA	chr20:42778791-42816218	inner
CUST_19802_PI429285431	0.9113841	A	0.9151182	A	0.997415065824014	0	lncRNA	21459-1_{1..522}	lnc-ACD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACD-1:1	chr16	 67648795	 67649316	-	lnc-ACD-1	lnc-ACD-1:1	ENSG00000237718.1	AC009095.4	CTCF	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10chr16:67638795-67659245"	NA	inner
CUST_41577_PI429285431	5.752359	P	5.8818035	P	0.914183382619241	0	lncRNA	42897-1_{1..70}	ENST00000583431 ncrna:miRNA chromosome:GRCh37:19:813584:813653:1 gene:ENSG00000263414 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583431 ncrna:miRNA chromosome:GRCh37:19:813584:813653:1 gene:ENSG00000263414 gene_biotype:miRNA transcript_biotype:miRNA	chr19	   813584	   813653	+	ENSG00000263414	ENST00000583431	NA	NA	PTBP1	"hg19_refFlat_LPPR3:range=chr19:812570-8215595'pad=0,hg19_refFlat_LPPR3:range=chr19:812570-8215595'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30chr19:803584-812327"	NA	inner
CUST_39826_PI429285431	4.278441	P	4.3977203	P	0.92064744628132	0	lncRNA	40734-1_{1..3000}	n406404|NR_015427|lncRNA|Homosapiens||RefGeneNoncode|NR_015427||1.0408200|-0.1933619	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n406404|NR_015427|lncRNA|Homosapiens||RefGeneNoncode|NR_015427||1.0408200|-0.1933619	chr9	136890560	136893559	+	NA	NA	NA	NA	BRD3	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60chr9:136895427-136906719"	NA	inner
CUST_34614_PI429285431	5.8019094	P	6.344664	P	0.686458971213664	0	lncRNA	36069-1_{1..2724}	n341499|BC033145|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3969|NULL|-0.6984730|-0.2300055	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341499|BC033145|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3969|NULL|-0.6984730|-0.2300055	chr8	 53850990	 53853713	-	NA	NA	NA	NA	NPBWR1	"hg19_refFlat_OPRL1:range=chr20:62724074-627301525'pad=0,hg19_refFlat_OPRL1:range=chr20:62724074-627301525'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_APLNR:range=chr11:57003336-570044785'pad=0,hg19_refFlat_APLNR:range=chr11:57003336-570044785'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NPBWR1:range=chr8:53852468-538534545'pad=0,hg19_refFlat_NPBWR1:range=chr8:53852468-538534545'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.80chr8:53852468-53853454"	NA	inner
CUST_1716_PI429285431	3.8365738	P	4.304126	P	0.723190584510453	0	lncRNA	1701-1_{1..762}	"transcript_id ""ENST00000503085.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503085.1"" | genecode_v17"	chr4	 25866503	 25867264	-	ENSG00000251009.2	ENST00000503085.1	RP13-494C23.1	RP13-494C23.1-001	SEL1L3	NA	chr4:25856503-25864610	inter
LNCA_21_P0005164	0.91442406	A	0.9010886	A	1.00928628899264	0	lncRNA	TCONS_00012713	NA	NA	NA	NA	XLOC_005715	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005715), lincRNA [TCONS_00012713]"	chr6:40965899-40880416	hs|6p21.1	Agilent_HUMAN_G3V2	TCONS_00012713	TCONS_00012713	chr6	 40880416	 40965899	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9654_PI429285431	4.122531	P	4.623498	P	0.706632985178332	0	lncRNA	11172-1_{1..647}	lnc-THSD4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THSD4-2:1	chr15	 71385416	 71386062	+	lnc-THSD4-2	lnc-THSD4-2:1	XLOC_011298	linc-THSD4	CT62	NA	chr15:71375416-71395917	inter
CUST_5260_PI429285431	0.91379833	A	0.97666144	A	0.957362293128043	0	lncRNA	5200-1_{1..539}	"transcript_id ""ENST00000560760.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560760.1"" | genecode_v17"	chr15	 80124808	 80125346	-	ENSG00000259548.1	ENST00000560760.1	RP11-38G5.2	RP11-38G5.2-001	MTHFS	NA	chr15:80135889-80135896	inter
CUST_5468_PI429285431	1.2747319	A	0.9172526	A	1.28118543303186	0	lncRNA	5401-1_{1..474}	"transcript_id ""ENST00000569920.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569920.1"" | genecode_v17"	chr16	 25114649	 25115122	-	ENSG00000260448.1	ENST00000569920.1	RP11-449H11.1	RP11-449H11.1-002	LCMT1	NA	chr16:25123047-25132876	inter
CUST_47476_PI429285431	0.9122769	A	0.9004005	A	1.00826607002376	0	lncRNA	51498-2_{3001..3564}	"gi|364023799|ref|NR_045649.1| Homo sapiens piwi-like 3 (Drosophila) (PIWIL3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|364023799|ref|NR_045649.1| Homo sapiens piwi-like 3 (Drosophila) (PIWIL3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_045649.1	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80"	NA	Unknown
CUST_35922_PI429285431	3.0833936	P	3.285099	P	0.869522099383352	0	lncRNA	37289-1_{1..1098}	n344564|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_112|NULL|-1.3515900|-0.2991811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344564|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_112|NULL|-1.3515900|-0.2991811	chr12	114182497	114183594	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48215_PI429285431	0.9245627	A	1.1418588	A	0.860176069199711	0	lncRNA	52077-2_{3001..3518}	hg19_lincRNAsTranscripts_TCONS_l2_00001295 range=chr1:79518696-79561296 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001295 range=chr1:79518696-79561296 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 79521696	 79522213	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44190_PI429285431	1.257865	A	1.1588916	A	1.07101107601242	0	lncRNA	48847-1_{1..2568}	"gi|310119231|ref|XR_110023.1| PREDICTED: Homo sapiens MAGI1 intronic transcript 1 (non-protein coding) (MAGI1-IT1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310119231|ref|XR_110023.1| PREDICTED: Homo sapiens MAGI1 intronic transcript 1 (non-protein coding) (MAGI1-IT1), misc_RNA"	Chr3	 65858489	 65861056	-	151877	XR_110023.2	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80"	NA	inter
CUST_1242_PI429285431	6.2741976	P	6.4446707	P	0.888551252611435	0	lncRNA	1234-1_{1..689}	"transcript_id ""ENST00000434973.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434973.1"" | genecode_v17"	chr2	217664331	217665019	+	ENSG00000229352.1	ENST00000434973.1	AC007563.3	AC007563.3-001	NA	NA	NA	inter
CUST_29009_PI429285431	0.89208525	A	0.88757575	A	1.00313063745244	0	lncRNA	30733-1_{1..1826}	n326493|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030256|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030256|-1.0913400|-0.3858199	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326493|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030256|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030256|-1.0913400|-0.3858199	chr1	105946296	105948121	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31427_PI429285431	3.6681972	P	3.486625	P	1.13411913657803	0	lncRNA	33198-1_{1..1324}	n337894|BC010531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|277|NULL|-0.8578790|-0.1173384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337894|BC010531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|277|NULL|-0.8578790|-0.1173384	chrX	153285853	153287176	+	NA	NA	NA	NA	MECP2	NA	chrX:153287264-153297170	inter
CUST_24820_PI429285431	1.743701	A	1.5106287	A	1.17533522832956	0	lncRNA	26360-1_{1..541}	lnc-ALKBH4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALKBH4-1:1	chr7	102075161	102075701	-	lnc-ALKBH4-1	lnc-ALKBH4-1:1	ENSG00000239480.1	RP11-514P8.2	PRKRIP1	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50chr7:102065161-102067129"	NA	inner
CUST_14770_PI429285431	1.6768683	A	1.9949998	A	0.802108051790482	0	lncRNA	16431-1_{1..1390}	lnc-TNFAIP3-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFAIP3-5:3	chr6	137751750	137753139	+	lnc-TNFAIP3-5	lnc-TNFAIP3-5:3	XLOC_005476	linc-TNFAIP3-4	NA	NA	NA	inter
CUST_39224_PI429285431	4.458706	P	5.0342236	P	0.671045455219009	0	lncRNA	40197-1_{1..1432}	n386041|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zme.1||4.7317000|-0.0836506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386041|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zme.1||4.7317000|-0.0836506	chr12	 52473479	 52474910	+	NA	NA	NA	NA	C12orf44	NA	chr12:52463758-52471279	inter
CUST_32199_PI429285431	3.6128633	P	4.079612	P	0.723593473176233	0	lncRNA	33896-1_{1..2442}	n338776|AK092622|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1198|NULL|-1.1366200|-0.4578808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338776|AK092622|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1198|NULL|-1.1366200|-0.4578808	chr2	 38787214	 38789655	-	NA	NA	NA	NA	HNRPLL	NA	chr2:38790328-38799656	inter
CUST_5655_PI429285431	2.117872	A	2.4096985	A	0.816867222501511	0	lncRNA	5581-1_{1..756}	"transcript_id ""ENST00000565272.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565272.1"" | genecode_v17"	chr16	 81772687	 81773442	+	ENSG00000261218.1	ENST00000565272.1	RP11-960L18.1	RP11-960L18.1-003	NA	NA	NA	inter
CUST_29450_PI429285431	1.4225919	A	0.99808884	A	1.34211012988216	0	lncRNA	31207-1_{1..630}	n332852|AF075079|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066101|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066101|-1.1142400|-0.3314740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332852|AF075079|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066101|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066101|-1.1142400|-0.3314740	chr18	 46282064	 46282693	+	NA	NA	NA	NA	CTIF	NA	chr18:46272064-46292694	inner
CUST_34073_PI429285431	4.32558	P	3.7901337	P	1.44939045644728	0	lncRNA	35602-1_{1..521}	n340896|Z83948|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3361|NULL|-1.2049600|-0.3631252	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340896|Z83948|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3361|NULL|-1.2049600|-0.3631252	chr6	 25976774	 25977294	+	NA	NA	NA	NA	TRIM38	NA	chr6:25966774-25985358	inner
LNCA_21_P0009532	2.5697677	A	3.4686458	P	0.53630362127671	0	lncRNA	TCONS_00026443	NA	NA	NA	NA	XLOC_012786	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012786), lincRNA [TCONS_00026443]"	chr18:19745246-19745187	hs|18q11.2	Agilent_HUMAN_G3V2	TCONS_00026443	TCONS_00026443	chr18	 19745187	 19745246	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36081_PI429285431	1.0539459	A	0.9083631	A	1.1061774213384	0	lncRNA	37386-1_{1..3000}	n344670|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_219|NULL|-1.4261000|-0.3171921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344670|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_219|NULL|-1.4261000|-0.3171921	chr7	 19938141	 19941140	-	NA	NA	NA	NA	MACC1	NA	chr7:20174278-20175108	inter
CUST_24127_PI429285431	1.9469631	A	2.08471	A	0.908937562424317	0	lncRNA	25677-1_{1..2439}	lnc-ZNF267-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZNF267-1:2	chr16	 31799523	 31801961	+	lnc-ZNF267-1	lnc-ZNF267-1:2	ENSG00000259810.1	AC002519.5	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-12.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
LNCA_21_P0009964	8.816433	P	9.108444	P	0.816762763581407	0	lncRNA	XR_109619	XR_109619	XR_109619	NA	Hs.517091	LOC100506053	uncharacterized LOC100506053	NA	THC2522313	NA	"PREDICTED: Homo sapiens hypothetical LOC100506053 (LOC100506053), miscRNA [XR_109619]"	chr20:46749849-46749908	hs|20q13.13	Agilent_HUMAN_G3V2	XR_109619	XR_109619	chr20	 46749849	 46749908	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28277_PI429285431	0.90045345	A	0.897193	A	1.00226252738583	0	lncRNA	29912-1_{1..232}	n325571|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000130002|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000130002|-1.4142100|-0.4493412	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325571|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000130002|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000130002|-1.4142100|-0.4493412	chr17	 14569770	 14570001	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2830_PI429285431	4.21749	P	4.2819734	P	0.956287683627407	0	lncRNA	2814-1_{1..482}	"transcript_id ""ENST00000422831.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422831.1"" | genecode_v17"	chr7	 50907060	 50907541	-	ENSG00000236046.1	ENST00000422831.1	AC004920.3	AC004920.3-001	NA	NA	NA	inter
CUST_5207_PI429285431	1.0797966	A	2.038976	A	0.514349390312461	0	lncRNA	5147-1_{1..661}	"transcript_id ""ENST00000559379.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559379.1"" | genecode_v17"	chr15	 63682335	 63682995	+	ENSG00000259459.1	ENST00000559379.1	RP11-321G12.1	RP11-321G12.1-001	CA12	NA	chr15:63672335-63674075	inter
CUST_15154_PI429285431	0.9079488	A	0.90047085	A	1.00519677660175	0	lncRNA	16815-1_{1..1082}	lnc-DISC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DISC1-2:1	chr1	232448431	232449512	+	lnc-DISC1-2	lnc-DISC1-2:1	XLOC_000615	linc-KIAA1383-3	NA	NA	NA	inter
CUST_42220_PI429285431	0.89816135	A	0.91492087	A	0.988450400623465	0	lncRNA	44324-1_{1..91}	ENST00000515887 ncrna:miRNA chromosome:GRCh37:1:205031380:205031470:1 gene:ENSG00000251696 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515887 ncrna:miRNA chromosome:GRCh37:1:205031380:205031470:1 gene:ENSG00000251696 gene_biotype:miRNA transcript_biotype:miRNA	chr1	205031380	205031470	+	ENSG00000251696	ENST00000515887	NA	NA	CNTN2	NA	chr1:205021380-205041470	inner
CUST_14597_PI429285431	4.306767	P	4.094184	P	1.15876097247244	0	lncRNA	16264-1_{1..341}	lnc-FLNA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FLNA-1:1	chrX	153563362	153563702	-	lnc-FLNA-1	lnc-FLNA-1:1	XLOC_008263	linc-TEX28	TKTL1	NA	chrX:153553362-153558713	inter
CUST_20808_PI429285431	5.022456	P	4.8177996	P	1.15241184951633	0	lncRNA	22439-1_{1..692}	lnc-TMEM144-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM144-1:2	chr4	159120240	159120931	+	lnc-TMEM144-1	lnc-TMEM144-1:2	ENSG00000248429.1	RP11-597D13.9	NA	"hg19_refFlat_FAM198B:range=chr4:159048559-1590925275'pad=0,hg19_refFlat_FAM198B:range=chr4:159048559-1590925275'pad=0 3'pad=0 strand=- repeatMasking=none,-97.90"	NA	inter
CUST_23359_PI429285431	5.6493144	P	4.958528	P	1.6141631443946	0	lncRNA	24929-1_{1..320}	lnc-GINS1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GINS1-2:1	chr20	 25733199	 25733518	+	lnc-GINS1-2	lnc-GINS1-2:1	ENSG00000226465.1	RP13-401N8.1	NA	NA	NA	inter
CUST_20632_PI429285431	2.8155637	A	1.6174842	A	2.29434047506162	0	lncRNA	22271-1_{1..762}	lnc-C20orf96-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C20orf96-2:1	chr20	   328744	   329505	-	lnc-C20orf96-2	lnc-C20orf96-2:1	ENSG00000225377.1	RP5-1103G7.4	NRSN2	NA	chr20:327370-335512	inner
CUST_8526_PI429285431	4.5992846	P	4.9358053	P	0.791948927754792	0	lncRNA	10087-1_{1..1149}	lnc-TMEM88B-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM88B-3:4	chr1	  1335985	  1337133	+	lnc-TMEM88B-3	lnc-TMEM88B-3:4	ENSG00000224870	RP4-758J18.2	CCNL2	NA	chr1:1325985-1334718	inter
CUST_44380_PI429285431	0.90029955	A	0.8975451	A	1.00191106300923	0	lncRNA	49001-1_{1..3000}	"gi|193211440|ref|NR_024010.1| Homo sapiens UDP glucuronosyltransferase 2 family, polypeptide A3 (UGT2A3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|193211440|ref|NR_024010.1| Homo sapiens UDP glucuronosyltransferase 2 family, polypeptide A3 (UGT2A3), transcript variant 2, non-coding RNA"	NT_167250.1	   506428	   509427	-	79799	NR_024010.1	NA	NA	NA	NA	NA	Unknown
CUST_737_PI429285431	0.91965437	A	0.98847467	A	0.953417294166542	0	lncRNA	729-1_{1..296}	"transcript_id ""ENST00000436187.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436187.1"" | genecode_v17"	chr2	  8710461	  8710756	-	ENSG00000236008.1	ENST00000436187.1	AC011747.4	AC011747.4-002	NA	NA	NA	inter
CUST_23369_PI429285431	0.91586065	A	1.820815	A	0.534049602244234	0	lncRNA	24937-1_{1..454}	lnc-THOC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-THOC1-1:1	chr18	   424276	   424729	-	lnc-THOC1-1	lnc-THOC1-1:1	ENSG00000265477.1	RP11-720L2.2	COLEC12	NA	chr18:414276-434416	inner
CUST_19824_PI429285431	0.91657734	A	0.91562515	A	1.00066022566694	0	lncRNA	21481-1_{1..805}	lnc-MTRR-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTRR-6:1	chr5	  9045917	  9046721	+	lnc-MTRR-6	lnc-MTRR-6:1	ENSG00000250619.1	CTD-2215L10.1	SEMA5A	NA	chr5:9035917-9056052	inner
CUST_3007_PI429285431	2.6986275	A	3.0078263	A	0.80708985174925	0	lncRNA	2986-1_{1..524}	"transcript_id ""ENST00000518098.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518098.1"" | genecode_v17"	chr8	 10335380	 10335903	+	ENSG00000253641.1	ENST00000518098.1	RP11-981G7.2	RP11-981G7.2-003	PRSS55	NA	chr8:10332392-10348496	inter
CUST_4688_PI429285431	0.8950019	A	0.87672484	A	1.01274928044874	0	lncRNA	4635-1_{1..485}	"transcript_id ""ENST00000414368.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414368.1"" | genecode_v17"	chr13	106382235	106382719	+	ENSG00000225562.1	ENST00000414368.1	LINC00344	LINC00344-001	NA	NA	NA	inter
CUST_1171_PI429285431	0.92527616	A	0.9221025	A	1.00220223484592	0	lncRNA	1160-1_{1..563}	"transcript_id ""ENST00000432925.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432925.1"" | genecode_v17"	chr2	177710721	177711283	-	ENSG00000227098.1	ENST00000432925.1	AC073636.1	AC073636.1-001	NA	NA	NA	inter
CUST_4531_PI429285431	0.91863585	A	1.3027096	A	0.766270807641982	0	lncRNA	4479-1_{1..583}	"transcript_id ""ENST00000536191.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536191.1"" | genecode_v17"	chr12	131691752	131692334	+	ENSG00000204603.2	ENST00000536191.1	RP11-638F5.1	RP11-638F5.1-002	NA	NA	NA	inter
CUST_5529_PI429285431	0.9247793	A	0.92361563	A	1.00080691996449	0	lncRNA	5460-1_{1..1851}	"transcript_id ""ENST00000569877.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569877.2"" | genecode_v17"	chr16	 49328797	 49330647	+	ENSG00000259957.2	ENST00000569877.2	RP11-491F9.8	RP11-491F9.8-001	NA	NA	NA	inter
CUST_23546_PI429285431	0.8982103	A	0.8998215	A	0.998883824650304	0	lncRNA	25113-1_{1..852}	lnc-CHST6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CHST6-1:1	chr16	 75493788	 75494639	-	lnc-CHST6-1	lnc-CHST6-1:1	ENSG00000261476.1	RP11-77K12.3	TMEM170A	"hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50chr16:75483788-75498584"	NA	inner
CUST_46182_PI429285431	1.6480502	A	2.0422757	A	0.760897749238169	0	lncRNA	50428-1_{1..741}	"gi|341915654|ref|XR_110110.2| PREDICTED: Homo sapiens uncharacterized LOC100506997 (LOC100506997), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915654|ref|XR_110110.2| PREDICTED: Homo sapiens uncharacterized LOC100506997 (LOC100506997), misc_RNA"	NA	NA	NA	NA	NA	XR_110110.2	NA	NA	NA	NA	NA	Unknown
CUST_22771_PI429285431	7.8050237	P	8.094005	P	0.818479790536184	0	lncRNA	24352-2_{3001..4533}	lnc-IL17B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL17B-3:1	chr5	148659253	148660785	-	lnc-IL17B-3	lnc-IL17B-3:1	ENSG00000253406.1	AC012613.2	AFAP1L1	"hg19_refFlat_ABLIM3:range=chr5:148521659-1486379675'pad=0,hg19_refFlat_ABLIM3:range=chr5:148521659-1486379675'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30chr5:148651401-148666368"	NA	inner
CUST_19157_PI429285431	2.1097562	A	0.9011769	A	2.31109938203719	0	lncRNA	20829-3_{6001..7115}	lnc-OSBP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-OSBP2-3:1	NA	     6000	     7114	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41342_PI429285431	0.90969425	A	0.90478003	A	1.0034120856943	0	lncRNA	42409-1_{1..89}	ENST00000408856 ncrna:miRNA chromosome:GRCh37:7:21510676:21510764:1 gene:ENSG00000221783 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408856 ncrna:miRNA chromosome:GRCh37:7:21510676:21510764:1 gene:ENSG00000221783 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 21510676	 21510764	+	ENSG00000221783	ENST00000408856	NA	NA	SP4	NA	chr7:21500676-21520764	inner
LNCA_21_P0009897	0.90868974	A	0.91566265	A	0.995178408465015	0	lncRNA	ENST00000416563	NA	NA	NA	NA	XLOC_013713	NA	ENST00000416563	NA	NA	"BROAD Institute lincRNA (XLOC_013713), lincRNA [TCONS_00028034]"	chr20:26113583-26113524	hs|20p11.1	Agilent_HUMAN_G3V2	ENST00000416563	ENST00000416563	chr20	 26113524	 26113583	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013109	0.9119489	A	0.91762286	A	0.996074834304036	0	lncRNA	TCONS_l2_00024969	NA	NA	NA	NA	XLOC_l2_013153	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013153), lincRNA [TCONS_l2_00024969]"	chr6:147182916-147182857	hs|6q24.3	Agilent_HUMAN_G3V2	TCONS_l2_00024969	TCONS_l2_00024969	chr6	147182857	147182916	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37461_PI429285431	3.4498167	A	2.5197656	A	1.90534348181763	0	lncRNA	38560-1_{1..849}	n345913|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1462|NULL|-1.2782500|-0.1311416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345913|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1462|NULL|-1.2782500|-0.1311416	chr15	 23295887	 23296735	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7039_PI429285431	5.2758346	P	5.6382055	P	0.7778851656798	0	lncRNA	6984-1_{1..828}	"transcript_id ""ENST00000438026.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438026.1"" | genecode_v17"	chrX	 39085356	 39086183	-	ENSG00000224610.1	ENST00000438026.1	RP11-265P11.1	RP11-265P11.1-001	NA	NA	NA	inter
CUST_5416_PI429285431	6.631388	P	6.6287117	P	1.00185679150578	0	lncRNA	5350-1_{1..340}	"transcript_id ""ENST00000576080.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000576080.1"" | genecode_v17"	chr16	  4374668	  4375007	-	ENSG00000262686.1	ENST00000576080.1	AC005356.1	AC005356.1-001	GLIS2	NA	chr16:4382225-4388341	inter
CUST_8977_PI429285431	0.9261143	A	0.95643115	A	0.979205217312055	0	lncRNA	10508-1_{1..1019}	lnc-GRM7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GRM7-1:1	chr3	  7841521	  7842539	+	lnc-GRM7-1	lnc-GRM7-1:1	ENSG00000249113	ENST00000510631	NA	NA	NA	inter
CUST_44251_PI429285431	0.9227681	A	0.90392673	A	1.01314549469831	0	lncRNA	48897-1_{1..3000}	"gi|388490185|ref|NR_049770.1| Homo sapiens armadillo repeat containing 8 (ARMC8), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388490185|ref|NR_049770.1| Homo sapiens armadillo repeat containing 8 (ARMC8), transcript variant 6, non-coding RNA"	Chr3	137906115	137909114	+	25852	NR_049770.1	NA	NA	NA	NA	NA	inter
CUST_6256_PI429285431	3.6665273	P	3.4455907	P	1.16548997893285	0	lncRNA	6181-1_{1..951}	"transcript_id ""ENST00000577806.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577806.1"" | genecode_v17"	chr18	 72260437	 72261387	-	ENSG00000264247.1	ENST00000577806.1	RP11-231E4.4	RP11-231E4.4-004	CNDP1	NA	chr18:72250437-72252261	inter
CUST_10685_PI429285431	5.472421	P	5.9707413	P	0.707930530432392	0	lncRNA	12219-1_{1..443}	lnc-VEZF1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VEZF1-1:2	chr17	 56070912	 56071354	-	lnc-VEZF1-1	lnc-VEZF1-1:2	XLOC_012534	linc-VEZF1	SRSF1	NA	chr17:56078280-56080937	inter
CUST_24669_PI429285431	9.815334	P	9.70948	P	1.0761312153447	0	lncRNA	26216-1_{1..532}	lnc-TPCN2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TPCN2-2:2	chr11	 68780459	 68780990	+	lnc-TPCN2-2	lnc-TPCN2-2:2	ENSG00000256508.2	RP11-554A11.6	MRGPRF	NA	chr11:68771862-68780850	inner
CUST_13952_PI429285431	0.9039817	A	0.89965576	A	1.0030030131514	0	lncRNA	15598-2_{3001..6000}	lnc-FAM120B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM120B-3:2	chr6	170494080	170497079	+	lnc-FAM120B-3	lnc-FAM120B-3:2	XLOC_005563	linc-FAM120B-2	NA	NA	NA	inter
CUST_42150_PI429285431	7.0053344	P	7.012841	P	0.994810334461154	0	lncRNA	44179-1_{1..74}	ENST00000401316 ncrna:miRNA chromosome:GRCh37:3:10436173:10436246:-1 gene:ENSG00000216135 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401316 ncrna:miRNA chromosome:GRCh37:3:10436173:10436246:-1 gene:ENSG00000216135 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 10436173	 10436246	-	ENSG00000216135	ENST00000401316	NA	NA	ATP2B2	NA	chr3:10426173-10446246	inner
LNCA_21_P0009179	1.2096239	A	1.5566922	A	0.786180071959731	0	lncRNA	TCONS_00025198	NA	NA	NA	NA	XLOC_012301	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012301), lincRNA [TCONS_00025198]"	chr17:71274653-71274712	hs|17q25.1	Agilent_HUMAN_G3V2	TCONS_00025198	TCONS_00025198	chr17	 71274653	 71274712	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39062_PI429285431	3.285805	P	2.0347395	A	2.38017145265843	0	lncRNA	40038-1_{1..1713}	n385519|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004abd.1||1.9204600|-0.2513759	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385519|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004abd.1||1.9204600|-0.2513759	chr9	 38566269	 38567981	-	NA	NA	NA	NA	ANKRD18A	NA	chr9:38567398-38577982	inter
CUST_38699_PI429285431	4.573598	P	5.346375	P	0.585289783053387	0	lncRNA	39694-1_{1..1842}	n384104|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zuo.1||1.5115700|-0.1050344	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384104|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zuo.1||1.5115700|-0.1050344	chr22	 21642518	 21644359	-	NA	NA	NA	NA	LOC100132705	NA	chr22:21632518-21633741	inter
CUST_8821_PI429285431	0.9252088	A	0.9290726	A	0.997325401053897	0	lncRNA	10360-1_{1..415}	lnc-C20orf197-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf197-3:5	chr20	 58676150	 58676564	+	lnc-C20orf197-3	lnc-C20orf197-3:5	ENSG00000228340	RP5-1043L13.1	NA	NA	NA	inter
CUST_20998_PI429285431	1.8568456	A	2.030751	A	0.886439822675976	0	lncRNA	22627-1_{1..780}	lnc-RBM11-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBM11-2:3	chr21	 15460930	 15461709	+	lnc-RBM11-2	lnc-RBM11-2:3	ENSG00000224905.2	AP001347.6	NA	NA	NA	inter
LNCA_19_P00320555	9.677088	P	9.687323	P	0.992930744184328	0	lncRNA	TCONS_l2_00028295	NA	NA	NA	NA	XLOC_l2_014579	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014579), lincRNA [TCONS_l2_00028295]"	chr8:90629367-90629308	hs|8q21.3	Agilent_HUMAN_G3V2	TCONS_l2_00028295	TCONS_l2_00028295	chr8	 90629308	 90629367	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5743_PI429285431	0.92582697	A	0.9114248	A	1.01003281813621	0	lncRNA	5667-1_{1..538}	"transcript_id ""ENST00000580422.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580422.1"" | genecode_v17"	chr17	 15283181	 15283718	-	ENSG00000266667.1	ENST00000580422.1	RP11-849N15.4	RP11-849N15.4-001	NA	NA	NA	inter
CUST_24017_PI429285431	0.9162461	A	0.9222518	A	0.995845818560673	0	lncRNA	25571-1_{1..862}	lnc-COMMD10-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COMMD10-2:2	chr5	115806887	115807748	+	lnc-COMMD10-2	lnc-COMMD10-2:2	ENSG00000248445.1	CTB-118N6.3	SEMA6A	"hg19_refFlat_SEMA6A:range=chr5:115782309-1158406405'pad=0,hg19_refFlat_SEMA6A:range=chr5:115782309-1158406405'pad=0 3'pad=0 strand=- repeatMasking=none,-97.20chr5:115796887-115817369"	NA	inner
CUST_8797_PI429285431	4.936449	P	5.7055883	P	0.586767430840075	0	lncRNA	10338-1_{1..576}	lnc-AC009336.1-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC009336.1-2:10	chr2	177042731	177043306	-	lnc-AC009336.1-2	lnc-AC009336.1-2:10	ENSG00000224189	AC009336.23	HOXD3	NA	chr2:177032731-177037826	inter
CUST_43858_PI429285431	0.89945257	A	0.8957951	A	1.00253838126665	0	lncRNA	48579-1_{1..1029}	"gi|397138956|ref|XR_158984.1| PREDICTED: Homo sapiens uncharacterized LOC100996448 (LOC100996448), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397138956|ref|XR_158984.1| PREDICTED: Homo sapiens uncharacterized LOC100996448 (LOC100996448), misc_RNA"	NA	NA	NA	NA	NA	XR_158984.1	NA	NA	NA	NA	NA	Unknown
CUST_19318_PI429285431	6.629057	P	6.671481	P	0.971022075647299	0	lncRNA	20984-1_{1..914}	lnc-IDH3G-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IDH3G-1:2	chrX	153031838	153032751	-	lnc-IDH3G-1	lnc-IDH3G-1:2	ENSG00000232725.1	U52111.14	PLXNB3	NA	chrX:153029651-153041908	inner
CUST_49029_PI429285431	0.9150841	A	0.9196726	A	0.996824546612824	0	lncRNA	52858-1_{1..2735}	hg19_lincRNAsTranscripts_TCONS_l2_00021166 range=chr4:68283765-68289082 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021166 range=chr4:68283765-68289082 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 68283765	 68286499	-	NA	NA	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20"	NA	inter
CUST_51325_PI429285431	0.90908813	A	1.3761626	A	0.7234300994715	0	lncRNA	54928-2_{3001..4138}	hg19_lincRNAsTranscripts_TCONS_l2_00009081 range=chr15:45115622-45124567 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009081 range=chr15:45115622-45124567 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 45118622	 45119759	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40577_PI429285431	5.892195	P	3.9984765	P	3.71591757296494	0	lncRNA	41329-1_{1..636}	n410022|NR_036455|lncRNA|Homosapiens||RefGeneNoncode|NR_036455||2.7535000|-0.3307427	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410022|NR_036455|lncRNA|Homosapiens||RefGeneNoncode|NR_036455||2.7535000|-0.3307427	chr19	 20578625	 20579260	-	NA	NA	NA	NA	ZNF737	NA	chr19:20599320-20617771	inter
CUST_51563_PI429285431	10.567274	P	10.092525	P	1.38967642298513	0	lncRNA	55128-1_{1..381}	hg19_lincRNAsTranscripts_TCONS_l2_00011128 range=chr17:19328662-19364306 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011128 range=chr17:19328662-19364306 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 19328662	 19329042	-	NA	NA	NA	NA	RNF112	NA	chr17:19318662-19320589	inter
CUST_12429_PI429285431	0.9419967	A	0.9127233	A	1.0204980318734	0	lncRNA	14042-1_{1..754}	lnc-RP11-433C9.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-433C9.2.1-1:1	chr3	184168683	184169436	+	lnc-RP11-433C9.2.1-1	lnc-RP11-433C9.2.1-1:1	XLOC_002949	linc-EPHB3-2	NA	NA	NA	inter
CUST_50696_PI429285431	1.2699577	A	0.9162705	A	1.27782228029076	0	lncRNA	54367-1_{1..2923}	hg19_lincRNAsTranscripts_TCONS_l2_00003053 range=chr10:52386924-52402226 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003053 range=chr10:52386924-52402226 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 52386924	 52389846	+	NA	NA	NA	NA	SGMS1	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_SHQ1:range=chr3:72799435-728974915'pad=0,hg19_refFlat_SHQ1:range=chr3:72799435-728974915'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80chr10:52376924-52383737"	NA	inter
CUST_39443_PI429285431	1.8144124	A	1.0474386	A	1.70169655514683	0	lncRNA	40389-1_{1..3000}	n386783|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010uad.1||1.6545300|-0.2744367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n386783|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010uad.1||1.6545300|-0.2744367	chr15	 24409925	 24412924	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49055_PI429285431	0.8927775	A	1.2405715	A	0.785784709535398	0	lncRNA	52883-1_{1..722}	hg19_lincRNAsTranscripts_TCONS_l2_00020946 range=chr4:187812099-187831845 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020946 range=chr4:187812099-187831845 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	187812099	187812820	+	NA	NA	NA	NA	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70"	NA	inter
CUST_290_PI429285431	0.90410125	A	0.9058318	A	0.998801193290246	0	lncRNA	281-1_{1..399}	"transcript_id ""ENST00000434540.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434540.1"" | genecode_v17"	chr1	 76507376	 76507774	+	ENSG00000230027.1	ENST00000434540.1	RP11-550H2.2	RP11-550H2.2-001	ST6GALNAC3	NA	chr1:76540389-76541913	inter
CUST_42901_PI429285431	10.269214	P	10.134163	P	1.09813163261001	0	lncRNA	45997-1_{1..134}	ENST00000365647 ncrna:snoRNA chromosome:GRCh37:3:40280099:40280232:1 gene:ENSG00000202517 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365647 ncrna:snoRNA chromosome:GRCh37:3:40280099:40280232:1 gene:ENSG00000202517 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	 40280099	 40280232	+	ENSG00000202517	ENST00000365647	NA	NA	MYRIP	NA	chr3:40270099-40290232	inter
CUST_37006_PI429285431	0.91344976	A	0.8976892	A	1.01098427673657	0	lncRNA	38147-1_{1..3000}	n345464|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1013|NULL|-1.2617700|-0.2868423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n345464|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1013|NULL|-1.2617700|-0.2868423	chr1	150537096	150540095	-	NA	NA	NA	NA	MCL1	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60chr1:150547027-150552214"	NA	inter
CUST_37892_PI429285431	4.2603316	P	5.1651783	P	0.53408945306717	0	lncRNA	38982-1_{1..378}	n346427|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1977|NULL|-1.4538000|-0.1584705	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346427|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1977|NULL|-1.4538000|-0.1584705	chr12	  9596154	  9596531	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13476_PI429285431	0.90257514	A	0.904052	A	0.998976842437922	0	lncRNA	15114-1_{1..956}	lnc-TRIM39-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRIM39-1:1	chr6	 30271883	 30272838	+	lnc-TRIM39-1	lnc-TRIM39-1:1	XLOC_005238	linc-TRIM39-1	NA	NA	NA	inter
CUST_21524_PI429285431	4.1404934	P	4.1712313	P	0.978919478339548	0	lncRNA	23142-1_{1..584}	lnc-BLID-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BLID-2:4	chr11	122238204	122238787	-	lnc-BLID-2	lnc-BLID-2:4	ENSG00000255090.1	RP11-820L6.1	NA	NA	NA	inter
LNCA_21_P0005171	1.0718895	A	0.92489636	A	1.10725931946515	0	lncRNA	TCONS_00012745	NA	NA	NA	NA	XLOC_005748	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005748), lincRNA [TCONS_00012745]"	chr6:53658115-53611787	hs|6p12.1	Agilent_HUMAN_G3V2	TCONS_00012745	TCONS_00012745	chr6	 53611787	 53658115	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7314_PI429285431	1.7726501	A	2.7011507	A	0.52540411321113	0	lncRNA	8529-1_{1..281}	"transcript_id ""ENST00000459938.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000459938.2"" | genecode_v17"	chr15	 84948770	 84949050	+	ENSG00000244056.2	ENST00000459938.2	RN7SL417P	RN7SL417P-201	NA	NA	NA	inter
CUST_1379_PI429285431	1.5942394	A	1.7186412	A	0.917384349190867	0	lncRNA	1367-1_{1..235}	"transcript_id ""ENST00000462492.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000462492.1"" | genecode_v17"	chr3	 72141580	 72141814	-	ENSG00000241163.2	ENST00000462492.1	RP11-398A8.3	RP11-398A8.3-006	NA	NA	NA	inter
CUST_48461_PI429285431	7.7075963	P	7.265897	P	1.35820316563207	0	lncRNA	52313-1_{1..282}	hg19_lincRNAsTranscripts_TCONS_l2_00000841 range=chr1:222997242-223010699 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000841 range=chr1:222997242-223010699 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	222997242	222997523	+	NA	NA	NA	NA	DISP1	NA	chr1:222988431-223020699	inner
CUST_49730_PI429285431	5.9889736	P	5.964197	P	1.01732214850636	0	lncRNA	53503-1_{1..237}	hg19_lincRNAsTranscripts_TCONS_l2_00025774 range=chr7:29730428-29734203 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025774 range=chr7:29730428-29734203 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 29730428	 29730664	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_208_PI429285431	1.1608685	A	1.8255005	A	0.630849599851006	0	lncRNA	198-1_{1..517}	"transcript_id ""ENST00000447478.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447478.1"" | genecode_v17"	chr1	 32398621	 32399137	+	ENSG00000228634.1	ENST00000447478.1	RP4-534N18.2	RP4-534N18.2-001	PTP4A2	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_EFCAB5:range=chr17:28270646-284007085'pad=0,hg19_refFlat_EFCAB5:range=chr17:28270646-284007085'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50chr1:32388621-32403988"	NA	inner
CUST_11209_PI429285431	3.5828643	P	3.355891	P	1.17037698107258	0	lncRNA	12766-1_{1..2165}	lnc-C5orf39-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf39-2:3	chr5	 42991255	 42993419	-	lnc-C5orf39-2	lnc-C5orf39-2:3	XLOC_004803	linc-SEPP1-3	NA	NA	NA	inter
CUST_48413_PI429285431	0.8947526	A	0.8874966	A	1.00504214498692	0	lncRNA	52265-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00001503 range=chr1:146565935-146582596 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001503 range=chr1:146565935-146582596 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	146568935	146571934	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20"	NA	inter
CUST_23479_PI429285431	2.0230408	A	2.1949477	A	0.887668618454757	0	lncRNA	25046-1_{1..635}	lnc-UBAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBAP1-1:1	chr9	 34095847	 34096481	+	lnc-UBAP1-1	lnc-UBAP1-1:1	ENSG00000228352.1	RP11-537H15.3	DCAF12	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90chr9:34085847-34106223"	NA	inner
CUST_39227_PI429285431	7.5530457	P	7.112491	P	1.35712602682499	0	lncRNA	40200-1_{1..374}	n386050|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010adl.1||0.4496340|-0.2109232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386050|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010adl.1||0.4496340|-0.2109232	chr13	 50656413	 50656786	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42865_PI429285431	10.145692	P	10.277834	P	0.912475671971952	0	lncRNA	45916-1_{1..124}	ENST00000390926 ncrna:snoRNA chromosome:GRCh37:16:11367970:11368093:-1 gene:ENSG00000212228 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390926 ncrna:snoRNA chromosome:GRCh37:16:11367970:11368093:-1 gene:ENSG00000212228 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 11367970	 11368093	-	ENSG00000212228	ENST00000390926	NA	NA	PRM1	NA	chr16:11374693-11375192	inter
CUST_35479_PI429285431	4.53032	P	4.1948113	P	1.26182225393669	0	lncRNA	36888-1_{1..3000}	n342578|BC035645|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5077|NULL|9.4530500|-0.2458159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342578|BC035645|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5077|NULL|9.4530500|-0.2458159	chr4	 22389504	 22392503	-	NA	NA	NA	NA	GPR125	NA	chr4:22388999-22517672	inner
CUST_28365_PI429285431	4.31334	P	4.78551	P	0.72087948587604	0	lncRNA	30015-1_{1..290}	n325677|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045393|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045393|-1.0572200|-0.2577661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325677|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045393|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045393|-1.0572200|-0.2577661	chr13	 80755308	 80755597	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7197_PI429285431	4.803356	P	4.708083	P	1.0682675363132	0	lncRNA	7532-1_{1..341}	"transcript_id ""ENST00000411185.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411185.1"" | genecode_v17"	chr3	190359952	190360292	+	ENSG00000223117.1	ENST00000411185.1	RN7SKP296	RN7SKP296-201	IL1RAP	NA	chr3:190349952-190370292	inner
CUST_50206_PI429285431	0.90404093	A	0.9062732	A	0.998453904781828	0	lncRNA	53931-1_{1..333}	hg19_lincRNAsTranscripts_TCONS_l2_00029294 range=chr9:44104420-44110582 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029294 range=chr9:44104420-44110582 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 44104420	 44104752	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41191_PI429285431	0.9165897	A	0.91705984	A	0.999674176876418	0	lncRNA	42051-1_{1..65}	ENST00000408861 ncrna:miRNA chromosome:GRCh37:12:79813037:79813101:1 gene:ENSG00000221788 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408861 ncrna:miRNA chromosome:GRCh37:12:79813037:79813101:1 gene:ENSG00000221788 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 79813037	 79813101	+	ENSG00000221788	ENST00000408861	NA	NA	SYT1	NA	chr12:79803037-79823101	inner
CUST_38111_PI429285431	1.5428352	A	1.0761814	A	1.38190055544139	0	lncRNA	39185-1_{1..2559}	n381187|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001eby.1||1.1852700|-0.3587856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381187|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001eby.1||1.1852700|-0.3587856	chr1	112938880	112941438	+	NA	NA	NA	NA	CTTNBP2NL	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40chr1:112938800-112951439"	NA	inner
CUST_17674_PI429285431	4.0825877	P	4.2831507	P	0.870210904301658	0	lncRNA	19403-1_{1..603}	lnc-PARP11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PARP11-1:1	chr12	  3866866	  3867468	-	lnc-PARP11-1	lnc-PARP11-1:1	XLOC_009982	linc-EFCAB4B	EFCAB4B	NA	chr12:3856866-3862366	inter
CUST_49031_PI429285431	0.91163784	A	0.91221786	A	0.999598041579272	0	lncRNA	52860-1_{1..862}	hg19_lincRNAsTranscripts_TCONS_l2_00020588 range=chr4:79870005-80230061 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020588 range=chr4:79870005-80230061 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 79870005	 79870866	+	NA	NA	NA	NA	PAQR3	NA	chr4:79860005-79860582	inter
CUST_21566_PI429285431	2.6418328	A	2.335435	A	1.23661619098082	0	lncRNA	23181-2_{3001..3264}	lnc-CCL27-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCL27-1:1	chr9	 34668975	 34669238	-	lnc-CCL27-1	lnc-CCL27-1:1	ENSG00000261215.1	RP11-195F19.30	IL11RA	NA	chr9:34655975-34661884	inter
CUST_8273_PI429285431	7.3028364	P	7.6727595	P	0.773823742812951	0	lncRNA	9857-1_{1..1463}	lnc-RP11-295D22.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-295D22.1.1-1:1	chr9	122285183	122286645	+	lnc-RP11-295D22.1.1-1	lnc-RP11-295D22.1.1-1:1	ENSG00000248653	XLOC_007544	NA	NA	NA	inter
CUST_46758_PI429285431	13.270916	P	12.9273815	P	1.26886140912425	0	lncRNA	50908-1_{1..1338}	"gi|224548955|ref|NR_027160.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224548955|ref|NR_027160.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 4, non-coding RNA"	Chr17	 16342301	 16343638	+	125144	NR_027160.1	NA	NA	NA	NA	NA	inter
CUST_6963_PI429285431	7.1242523	P	6.7063246	P	1.33600712332844	0	lncRNA	6911-1_{1..552}	"transcript_id ""ENST00000418271.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418271.1"" | genecode_v17"	chr22	 27619258	 27619809	-	ENSG00000233521.1	ENST00000418271.1	RP5-1172A22.1	RP5-1172A22.1-001	NA	NA	NA	inter
CUST_41971_PI429285431	0.896178	A	0.89059997	A	1.00387387991815	0	lncRNA	43774-1_{1..73}	ENST00000582237 ncrna:miRNA chromosome:GRCh37:11:47422521:47422593:1 gene:ENSG00000264583 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582237 ncrna:miRNA chromosome:GRCh37:11:47422521:47422593:1 gene:ENSG00000264583 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 47422521	 47422593	+	ENSG00000264583	ENST00000582237	NA	NA	SLC39A13	NA	chr11:47430046-47432593	inter
LNCA_21_P0004977	4.486829	P	5.2346253	P	0.595512501586959	0	lncRNA	TCONS_00012028	NA	NA	NA	NA	XLOC_005560	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005560), lincRNA [TCONS_00012028]"	chr6:170455160-170455219	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012028	TCONS_00012028	chr6	170455160	170455219	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21886_PI429285431	1.5389487	A	1.7215266	A	0.881127134325716	0	lncRNA	23495-1_{1..805}	lnc-SAP30-5:24	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:24	chr4	174457999	174458803	+	lnc-SAP30-5	lnc-SAP30-5:24	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174447999-174451378	inter
CUST_33598_PI429285431	2.0205765	A	1.9782587	A	1.02976689774244	0	lncRNA	35163-1_{1..273}	n340354|AF009281|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2815|NULL|-1.2012100|-0.3461047	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340354|AF009281|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2815|NULL|-1.2012100|-0.3461047	chr5	  9286514	  9286786	-	NA	NA	NA	NA	SEMA5A	NA	chr5:9276514-9296787	inner
CUST_31419_PI429285431	2.0262659	A	2.3219485	A	0.814686778450894	0	lncRNA	33191-1_{1..2726}	n337885|AK057819|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|268|NULL|-1.0134400|-0.2284004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337885|AK057819|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|268|NULL|-1.0134400|-0.2284004	chrX	152689209	152691934	+	NA	NA	NA	NA	ZFP92	NA	chrX:152683781-152687086	inter
CUST_31895_PI429285431	7.1996427	P	7.524535	P	0.798357983113427	0	lncRNA	33626-1_{1..2641}	n338449|BC042991|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|846|NULL|-0.9660720|-0.1657768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338449|BC042991|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|846|NULL|-0.9660720|-0.1657768	chr14	 90955355	 90957995	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46421_PI429285431	1.9529452	A	2.0340116	A	0.945358605645352	0	lncRNA	50634-1_{1..3000}	"gi|310123203|ref|XR_110299.1| PREDICTED: Homo sapiens uncharacterized LOC100506948 (LOC100506948), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310123203|ref|XR_110299.1| PREDICTED: Homo sapiens uncharacterized LOC100506948 (LOC100506948), misc_RNA"	NA	NA	NA	NA	NA	XR_110299.1	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-21.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-17.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30"	NA	Unknown
LNCA_21_P0011400	8.000571	P	7.831782	P	1.12411450545067	0	lncRNA	XR_109206	XR_109206	XR_109206	NA	Hs.525720	LOC100130111	uncharacterized LOC100130111	NA	THC2620931	NA	"PREDICTED: Homo sapiens hypothetical LOC100130111 (LOC100130111), miscRNA [XR_109206]"	chr15:29971308-29971367	hs|15q13.1	Agilent_HUMAN_G3V2	XR_109206	XR_109206	chr15	 29971308	 29971367	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34309_PI429285431	7.7254295	P	8.20638	P	0.716505408628149	0	lncRNA	35804-1_{1..3000}	n341171|AL713633|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3637|NULL|5.8713700|-0.1178315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341171|AL713633|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3637|NULL|5.8713700|-0.1178315	chr7	  2291404	  2294403	-	NA	NA	NA	NA	FTSJ2	NA	chr7:2281404-2281833	inner
CUST_27584_PI429285431	0.9128753	A	2.0698826	A	0.448441810721176	0	lncRNA	29162-1_{1..700}	n324786|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000195004|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000195004|-1.2721800|-0.3217875	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324786|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000195004|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000195004|-1.2721800|-0.3217875	chr21	 40021642	 40022341	+	NA	NA	NA	NA	ERG	NA	chr21:40011642-40033481	inner
CUST_11099_PI429285431	1.5090976	A	1.0429938	A	1.38137383258869	0	lncRNA	12654-1_{1..1081}	lnc-EZH2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EZH2-2:1	chr7	148265192	148266272	-	lnc-EZH2-2	lnc-EZH2-2:1	XLOC_006637	linc-TPK1-3	NA	NA	NA	inter
LNCA_21_P0005686	0.92163926	A	0.9092558	A	1.00862050476814	0	lncRNA	TCONS_00014672	NA	NA	NA	NA	XLOC_006771	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006771), lincRNA [TCONS_00014672]"	chr8:34951053-34951112	hs|8p12	Agilent_HUMAN_G3V2	TCONS_00014672	TCONS_00014672	chr8	 34951053	 34951112	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24867_PI429285431	0.99849045	A	0.92027324	A	1.05571265218558	0	lncRNA	26408-1_{1..827}	lnc-USP13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP13-1:1	chr3	179598676	179599502	+	lnc-USP13-1	lnc-USP13-1:1	ENSG00000243799.1	PEX5L-AS1	PEX5L	"hg19_refFlat_PEX5L:range=chr3:179519616-1797543875'pad=0,hg19_refFlat_PEX5L:range=chr3:179519616-1797543875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PEX5L:range=chr3:179519616-1796159985'pad=0,hg19_refFlat_PEX5L:range=chr3:179519616-1796159985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20chr3:179588676-179609397"	NA	inner
CUST_16689_PI429285431	2.6152616	A	3.175054	P	0.678399776633824	0	lncRNA	18394-1_{1..293}	lnc-CMYA5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMYA5-1:1	chr5	 79139008	 79139300	+	lnc-CMYA5-1	lnc-CMYA5-1:1	XLOC_004441	linc-THBS4-2	NA	NA	NA	inter
LNCA_21_P0004318	0.92491263	A	0.91276413	A	1.00845625233074	0	lncRNA	TCONS_00010148	NA	NA	NA	NA	XLOC_004615	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004615), lincRNA [TCONS_00010148]"	chr5:157714856-157714915	hs|5q33.3	Agilent_HUMAN_G3V2	TCONS_00010148	TCONS_00010148	chr5	157714856	157714915	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006144	0.9268463	A	0.9148091	A	1.0083784556736	0	lncRNA	TCONS_00015974	NA	NA	NA	NA	XLOC_007346	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007346), lincRNA [TCONS_00015974]"	chr9:37363094-37363153	hs|9p13.2	Agilent_HUMAN_G3V2	TCONS_00015974	TCONS_00015974	chr9	 37363094	 37363153	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_771_PI429285431	8.245813	P	8.840253	P	0.662301485857907	0	lncRNA	763-1_{1..487}	"transcript_id ""ENST00000448379.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448379.1"" | genecode_v17"	chr2	 15941871	 15942357	-	ENSG00000237326.1	ENST00000448379.1	AC113608.1	AC113608.1-001	NA	NA	NA	inter
CUST_25794_PI429285431	0.9156591	A	1.5117097	A	0.661562516401384	0	lncRNA	27315-1_{1..423}	lnc-TSEN15-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TSEN15-2:1	chr1	184381150	184381572	+	lnc-TSEN15-2	lnc-TSEN15-2:1	ENSG00000230470.1	GS1-115G20.1	C1orf21	NA	chr1:184371150-184391494	inner
CUST_8521_PI429285431	1.67205	A	1.2058184	A	1.38149620591801	0	lncRNA	10082-1_{1..1916}	lnc-SLC25A2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A2-4:1	chr5	140476464	140478379	-	lnc-SLC25A2-4	lnc-SLC25A2-4:1	ENSG00000248756	ENST00000510498	PCDHB1	"hg19_refFlat_PCDHB14:range=chr5:140603078-1406054745'pad=0,hg19_refFlat_PCDHB14:range=chr5:140603078-1406054745'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.20;hg19_refFlat_PCDHB5:range=chr5:140515017-1405174045'pad=0,hg19_refFlat_PCDHB5:range=chr5:140515017-1405174045'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10;hg19_refFlat_PCDHB8:range=chr5:140557616-1405600215'pad=0,hg19_refFlat_PCDHB8:range=chr5:140557616-1405600215'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_PCDHB10:range=chr5:140572126-1405745285'pad=0,hg19_refFlat_PCDHB10:range=chr5:140572126-1405745285'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.20;hg19_refFlat_PCDHB15:range=chr5:140625147-1406275105'pad=0,hg19_refFlat_PCDHB15:range=chr5:140625147-1406275105'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.90;hg19_refFlat_PCDHB9:range=chr5:140566893-1405692855'pad=0,hg19_refFlat_PCDHB9:range=chr5:140566893-1405692855'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.20;hg19_refFlat_PCDHB16:range=chr5:140562135-1405644655'pad=0,hg19_refFlat_PCDHB16:range=chr5:140562135-1405644655'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_PCDHB3:range=chr5:140480234-1404826245'pad=0,hg19_refFlat_PCDHB3:range=chr5:140480234-1404826245'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.60;hg19_refFlat_PCDHB12:range=chr5:140588480-1405908675'pad=0,hg19_refFlat_PCDHB12:range=chr5:140588480-1405908675'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20;hg19_refFlat_PCDHB11:range=chr5:140579348-1405817415'pad=0,hg19_refFlat_PCDHB11:range=chr5:140579348-1405817415'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_PCDHB7:range=chr5:140552417-1405547985'pad=0,hg19_refFlat_PCDHB7:range=chr5:140552417-1405547985'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20;hg19_refFlat_PCDHB13:range=chr5:140593696-1405960925'pad=0,hg19_refFlat_PCDHB13:range=chr5:140593696-1405960925'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.50;hg19_refFlat_PCDHB6:range=chr5:140529839-1405322235'pad=0,hg19_refFlat_PCDHB6:range=chr5:140529839-1405322235'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_PCDHB2:range=chr5:140474375-1404767715'pad=0,hg19_refFlat_PCDHB2:range=chr5:140474375-1404767715'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.60;hg19_refFlat_PCDHB4:range=chr5:140501581-1405039685'pad=0,hg19_refFlat_PCDHB4:range=chr5:140501581-1405039685'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.60chr5:140466464-140486962"	NA	inner
CUST_43136_PI429285431	0.91028017	A	0.90996855	A	1.00021602185377	0	lncRNA	47950-1_{1..438}	ENST00000575808 havana:lincRNA chromosome:GRCh37:HSCHR5_1_CTG1:69110379:69110816:-1 gene:ENSG00000263336 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000575808 havana:lincRNA chromosome:GRCh37:HSCHR5_1_CTG1:69110379:69110816:-1 gene:ENSG00000263336 gene_biotype:lincRNA transcript_biotype:lincRNA	chrHSCHR5_1_CTG1	 69110379	 69110816	-	ENSG00000263336	ENST00000575808	NA	NA	NA	NA	NA	Unknown
CUST_15835_PI429285431	7.674809	P	7.9161444	P	0.845961903190737	0	lncRNA	17525-1_{1..244}	lnc-ZMAT5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZMAT5-1:3	chr22	 30115558	 30115801	-	lnc-ZMAT5-1	lnc-ZMAT5-1:3	XLOC_014338	linc-NIPSNAP1	CABP7	NA	chr22:30116344-30125703	inter
LNCA_21_P0001328	0.93835044	A	0.91948754	A	1.01316061444618	0	lncRNA	TCONS_00001008	NA	NA	NA	NA	XLOC_000271	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000271), lincRNA [TCONS_00001008]"	chr1:84039892-84039951	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_00001008	TCONS_00001008	chr1	 84039892	 84039951	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002478	0.94236296	A	0.9199258	A	1.01567381988828	0	lncRNA	THC2753911	NA	NA	NA	NA	XLOC_002229	NA	NA	THC2753911	NA	"BROAD Institute lincRNA (XLOC_002229), lincRNA [TCONS_00004354]"	chr2:102168124-102168065	hs|2q11.2	Agilent_HUMAN_G3V2	THC2753911	THC2753911	chr2	102168065	102168124	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33075_PI429285431	7.2014856	P	6.756959	P	1.3608674937808	0	lncRNA	34681-2_{3001..5396}	n339763|D86979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2210|NULL|11.9829000|-0.2330352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n339763|D86979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2210|NULL|11.9829000|-0.2330352	chr3	197401855	197404250	-	NA	NA	NA	NA	KIAA0226	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.09;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30chr3:197398259-197476568"	NA	inner
LNCA_21_P0002963	4.7430778	P	5.8615255	P	0.460589139979999	0	lncRNA	TCONS_00006034	NA	NA	NA	NA	XLOC_002675	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002675), lincRNA [TCONS_00006034]"	chr3:58419922-58468994	hs|3p14.3	Agilent_HUMAN_G3V2	TCONS_00006034	TCONS_00006034	chr3	 58419922	 58468994	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31834_PI429285431	4.2188606	P	3.9863536	P	1.1748747797722	0	lncRNA	33569-1_{1..887}	n338380|BC033950|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|776|NULL|-1.0999800|-0.2939060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338380|BC033950|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|776|NULL|-1.0999800|-0.2939060	chr14	 72207054	 72207940	+	NA	NA	NA	NA	SIPA1L1	NA	chr14:72197054-72206122	inter
CUST_20819_PI429285431	0.9225642	A	1.458813	A	0.68956153231208	0	lncRNA	22450-1_{1..570}	lnc-PRPF18-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRPF18-7:1	chr10	 14049186	 14049755	+	lnc-PRPF18-7	lnc-PRPF18-7:1	ENSG00000229751.1	RP11-142M10.2	FRMD4A	NA	chr10:14039186-14059525	inner
CUST_50908_PI429285431	0.89357674	A	0.8992682	A	0.996062751914214	0	lncRNA	54549-2_{3001..3919}	hg19_lincRNAsTranscripts_TCONS_l2_00006111 range=chr12:9546891-9559219 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006111 range=chr12:9546891-9559219 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  9549891	  9550809	-	NA	NA	NA	NA	LOC728715	NA	chr12:9549658-9555094	inter
CUST_6210_PI429285431	0.9243179	A	0.9078895	A	1.01145238123379	0	lncRNA	6136-1_{1..478}	"transcript_id ""ENST00000592678.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592678.1"" | genecode_v17"	chr18	 54836846	 54837323	-	ENSG00000267726.1	ENST00000592678.1	CTD-2526M8.2	CTD-2526M8.2-001	NA	NA	NA	inter
CUST_18601_PI429285431	0.90922844	A	0.91274554	A	0.997565101238002	0	lncRNA	20308-1_{1..403}	lnc-MAGEA8-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MAGEA8-2:9	chrX	149185730	149186132	+	lnc-MAGEA8-2	lnc-MAGEA8-2:9	ENSG00000235703	RP13-507I23.1	NA	NA	NA	inter
CUST_22525_PI429285431	5.657875	P	5.7445006	P	0.941722823375975	0	lncRNA	24113-1_{1..812}	lnc-ZNF236-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF236-1:6	chr18	 74695683	 74696494	+	lnc-ZNF236-1	lnc-ZNF236-1:6	ENSG00000266844.1	RP11-862L9.3	MBP	NA	chr18:74690789-74706038	inner
LNCA_21_P0007831	0.9735055	A	0.9229888	A	1.03563576949707	0	lncRNA	HM801842	NA	HM801842	NA	NA	MUC19	"mucin 19, oligomeric"	NA	NA	GO:0005576	"BROAD Institute lincRNA (XLOC_009713), lincRNA [TCONS_00021099]"	chr12:40921101-40921570	hs|12q12	Agilent_HUMAN_G3V2	HM801842	HM801842	chr12	 40921101	 40921570	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51181_PI429285431	2.1632702	A	2.402736	A	0.847058902613986	0	lncRNA	54802-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00007915 range=chr14:101534354-101539520 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007915 range=chr14:101534354-101539520 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	101534354	101537353	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13028_PI429285431	3.9153697	P	3.3354118	A	1.49480562733359	0	lncRNA	14654-2_{3001..6000}	lnc-ARRDC3-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARRDC3-1:10	chr5	 90612455	 90615454	-	lnc-ARRDC3-1	lnc-ARRDC3-1:10	XLOC_004924	linc-LYSMD3-2	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20"	NA	inter
CUST_35915_PI429285431	2.84231	A	3.4790468	P	0.643166067874799	0	lncRNA	37286-1_{1..3000}	n344561|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_109|NULL|-1.3805400|-0.3217581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344561|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_109|NULL|-1.3805400|-0.3217581	chr6	167641550	167644549	+	NA	NA	NA	NA	UNC93A	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30chr6:167631550-167674481"	NA	inter
CUST_377_PI429201921	0.9125221	A	0.90615344	A	1.00442417662248	0	lncRNA	243-1_{1..3000}	TC02003291.hg.1	TCONS_l2_00015360-XLOC_l2_007356 // Broad TUCP // linc-MEIS1-1 chr2:+:66610437-66619582 // chr2 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr2:+:66610437-66619582	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00015360-XLOC_l2_007356	linc-MEIS1-1	chr2	 66610437	 66619582	+	NA	NA	NA	NA	FGGY	NA	chr1:59762625-59765312	Unknown
CUST_23076_PI429285431	2.1359925	A	0.89834476	A	2.35813733248587	0	lncRNA	24647-1_{1..2522}	lnc-MKKS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-MKKS-1:1	chr20	 10381657	 10384178	-	lnc-MKKS-1	lnc-MKKS-1:1	ENSG00000261062.1	RP5-931K24.3	MKKS	NA	chr20:10385832-10394178	inter
CUST_12095_PI429285431	4.214143	P	4.0328846	P	1.13387248162088	0	lncRNA	13691-1_{1..732}	lnc-RP11-6L6.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-6L6.2.1-1:1	chr4	147164338	147165069	+	lnc-RP11-6L6.2.1-1	lnc-RP11-6L6.2.1-1:1	XLOC_003723	linc-POU4F2-2	NA	NA	NA	inter
CUST_20873_PI429285431	4.07191	P	4.3200927	P	0.841956323200484	0	lncRNA	22504-1_{1..272}	lnc-CLEC4E-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLEC4E-2:7	chr12	  8538284	  8538555	-	lnc-CLEC4E-2	lnc-CLEC4E-2:7	ENSG00000226091.2	RP11-90D4.2	CLEC6A	NA	chr12:8528284-8548323	inter
CUST_44261_PI429285431	1.0249251	A	0.92972225	A	1.06821559384188	0	lncRNA	48904-2_{3001..6000}	"gi|284925116|ref|NR_033289.1| Homo sapiens glycerol kinase 5 (putative) (GK5), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|284925116|ref|NR_033289.1| Homo sapiens glycerol kinase 5 (putative) (GK5), transcript variant 2, non-coding RNA"	Chr3	141879369	141882368	-	256356	NR_033289.1	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_1710_PI429285431	1.1584942	A	0.91152185	A	1.1867140534472	0	lncRNA	1694-1_{1..534}	"transcript_id ""ENST00000503815.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503815.1"" | genecode_v17"	chr4	 18489685	 18490218	-	ENSG00000251048.1	ENST00000503815.1	RP11-608B3.1	RP11-608B3.1-001	NA	NA	NA	inter
CUST_34654_PI429285431	0.9708164	A	4.683789	P	0.0762577301828212	0	lncRNA	36106-1_{1..2403}	n341553|AK093753|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4024|NULL|2.1072400|-0.3456958	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341553|AK093753|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4024|NULL|2.1072400|-0.3456958	chr8	 86132844	 86135246	+	NA	NA	NA	NA	E2F5	NA	chr8:86122844-86126753	inner
CUST_45497_PI429285431	5.8329763	P	6.1395793	P	0.808543332689392	0	lncRNA	49909-2_{3001..3939}	"gi|395865395|ref|NR_073040.1| Homo sapiens neuroepithelial cell transforming 1 (NET1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|395865395|ref|NR_073040.1| Homo sapiens neuroepithelial cell transforming 1 (NET1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_073040.1	NA	NA	NA	NA	NA	Unknown
CUST_12366_PI429285431	0.895743	A	0.90127623	A	0.996172002759327	0	lncRNA	13978-1_{1..396}	lnc-TRHDE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRHDE-1:1	chr12	 73367333	 73367728	+	lnc-TRHDE-1	lnc-TRHDE-1:1	XLOC_009803	linc-ATXN7L3B-2	NA	NA	NA	inter
LNCA_21_P0014656	3.8031757	P	4.2272577	P	0.74531283005363	0	lncRNA	XR_110924	XR_110924	XR_110924	NA	NA	ARSD-AS1	ARSD antisense RNA 1 (non-protein coding)	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506356 (LOC100506356), miscRNA [XR_110924]"	chrX:2824121-2824180	hs|Xp22.33	Agilent_HUMAN_G3V2	XR_110924	XR_110924	chrX	  2824121	  2824180	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46860_PI429285431	7.970139	P	7.8653326	P	1.07535007600551	0	lncRNA	50991-1_{1..538}	"gi|301129243|ref|NR_034172.1| Homo sapiens KANSL1 antisense RNA 1 (KANSL1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|301129243|ref|NR_034172.1| Homo sapiens KANSL1 antisense RNA 1 (KANSL1-AS1), non-coding RNA"	NT_167251.1	   592236	   592773	-	644246	NR_034172.1	NA	NA	NA	NA	NA	Unknown
CUST_35093_PI429285431	1.1013806	A	1.0081098	A	1.06678600231337	0	lncRNA	36500-1_{1..2644}	n342059|BC035235|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4540|NULL|3.9725500|-0.2238915	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342059|BC035235|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4540|NULL|3.9725500|-0.2238915	chr12	126927026	126929669	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41953_PI429285431	0.9226796	A	0.9214677	A	1.00084037798799	0	lncRNA	43727-1_{1..71}	ENST00000579313 ncrna:miRNA chromosome:GRCh37:9:112273755:112273825:-1 gene:ENSG00000263861 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579313 ncrna:miRNA chromosome:GRCh37:9:112273755:112273825:-1 gene:ENSG00000263861 gene_biotype:miRNA transcript_biotype:miRNA	chr9	112273755	112273825	-	ENSG00000263861	ENST00000579313	NA	NA	NA	NA	NA	inter
CUST_17614_PI429285431	2.2964258	A	1.7044644	A	1.5072945806271	0	lncRNA	19338-1_{1..1070}	lnc-IGF1R-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGF1R-2:1	chr15	 99573450	 99574519	+	lnc-IGF1R-2	lnc-IGF1R-2:1	XLOC_011379	linc-SYNM-2	NA	NA	NA	inter
CUST_21067_PI429285431	5.3160305	P	5.656102	P	0.790002158367699	0	lncRNA	22694-1_{1..729}	lnc-CEACAM18-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CEACAM18-1:2	chr19	 51920386	 51921114	+	lnc-CEACAM18-1	lnc-CEACAM18-1:2	ENSG00000255441.1	CTD-2616J11.2	SIGLEC10	"hg19_refFlat_SIGLEC11:range=chr19:50453227-504643385'pad=0,hg19_refFlat_SIGLEC11:range=chr19:50453227-504643385'pad=0 3'pad=0 strand=- repeatMasking=none,-99.10;hg19_refFlat_SIGLEC10:range=chr19:51914353-519208355'pad=0,hg19_refFlat_SIGLEC10:range=chr19:51914353-519208355'pad=0 3'pad=0 strand=- repeatMasking=none,-106.50chr19:51910386-51921057"	NA	inner
CUST_8048_PI429285431	6.1803207	P	6.2011557	P	0.985662059958067	0	lncRNA	9656-1_{1..975}	lnc-DDX20-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DDX20-3:1	chr1	112533190	112534164	+	lnc-DDX20-3	lnc-DDX20-3:1	ENSG00000240200	RP11-88H9.2	KCND3	NA	chr1:112523190-112531777	inner
LNCA_33_P3305805	0.92636514	A	0.92495686	A	1.00097662189633	0	lncRNA	XR_108987	XR_108987	XR_108987	100507465	NA	LOC100507465	uncharacterized LOC100507465	NA	THC2652073	NA	"PREDICTED: Homo sapiens hypothetical LOC100507465 (LOC100507465), miscRNA [XR_108987]"	chr9:104243729-104243788	hs|9q31.1	Agilent_HUMAN_G3V2	XR_108987	XR_108987	chr9	104243729	104243788	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10701_PI429285431	0.9015736	A	0.9044459	A	0.99801105393312	0	lncRNA	12237-1_{1..682}	lnc-CCDC37-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC37-1:1	chr3	126012876	126013557	+	lnc-CCDC37-1	lnc-CCDC37-1:1	XLOC_002798	linc-CCDC37-2	LOC644662	NA	chr3:126002876-126010368	inter
CUST_2204_PI429285431	0.9179685	A	0.9284789	A	0.992741219010433	0	lncRNA	2196-1_{1..550}	"transcript_id ""ENST00000512458.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512458.1"" | genecode_v17"	chr5	 73617456	 73618005	+	ENSG00000251041.1	ENST00000512458.1	CTD-2275D24.1	CTD-2275D24.1-001	NA	NA	NA	inter
LNCA_21_P0006962	1.9203273	A	1.5319645	A	1.30890718593155	0	lncRNA	TCONS_00018424	NA	NA	NA	NA	XLOC_008719	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008719), lincRNA [TCONS_00018424]"	chr10:6298595-6298536	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_00018424	TCONS_00018424	chr10	  6298536	  6298595	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49991_PI429285431	0.8916178	A	1.094129	A	0.869036573855513	0	lncRNA	53728-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00026989 range=chr7:155029884-155045775 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026989 range=chr7:155029884-155045775 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	155035884	155038883	-	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60"	NA	inter
CUST_46058_PI429285431	9.807217	P	9.853278	P	0.968577234999466	0	lncRNA	50333-1_{1..760}	"gi|344925881|ref|NR_045039.1| Homo sapiens single-strand-selective monofunctional uracil-DNA glycosylase 1 (SMUG1), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|344925881|ref|NR_045039.1| Homo sapiens single-strand-selective monofunctional uracil-DNA glycosylase 1 (SMUG1), transcript variant 7, non-coding RNA"	Chr12	 54575237	 54575996	-	23583	NR_045039.1	NA	NA	NA	NA	NA	inter
CUST_26654_PI429285431	0.90456426	A	0.90278065	A	1.00123706878184	0	lncRNA	28154-1_{1..790}	lnc-PCDH20-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>lnc-PCDH20-10:1	chr13	 64405587	 64406376	-	lnc-PCDH20-10	lnc-PCDH20-10:1	ENSG00000219926.3	RP11-394A14.2	LOC100507505	NA	chr13:64395587-64407126	inter
CUST_13621_PI429285431	1.1064231	A	1.1388979	A	0.977741639576368	0	lncRNA	15261-1_{1..1607}	lnc-UMODL1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UMODL1-4:1	chr21	 43194727	 43196333	+	lnc-UMODL1-4	lnc-UMODL1-4:1	XLOC_013950	linc-UMODL1-2	RIPK4	NA	chr21:43184727-43187249	inter
CUST_19680_PI429285431	1.1038145	A	0.9222056	A	1.13414798723638	0	lncRNA	21337-1_{1..769}	lnc-DAPP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DAPP1-2:1	chr4	100958685	100959453	+	lnc-DAPP1-2	lnc-DAPP1-2:1	ENSG00000245322.2	RP11-15B17.1	NA	NA	NA	inter
CUST_41683_PI429285431	9.792564	P	9.606371	P	1.13775742392874	0	lncRNA	43147-1_{1..86}	ENST00000583451 ncrna:miRNA chromosome:GRCh37:16:2183120:2183205:1 gene:ENSG00000265867 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583451 ncrna:miRNA chromosome:GRCh37:16:2183120:2183205:1 gene:ENSG00000265867 gene_biotype:miRNA transcript_biotype:miRNA	chr16	  2183120	  2183205	+	ENSG00000265867	ENST00000583451	NA	NA	PKD1	NA	chr16:2173120-2185899	inner
CUST_50339_PI429285431	1.3616457	A	1.1527901	A	1.15577101912057	0	lncRNA	54055-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00029089 range=chr9:133231492-133253556 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029089 range=chr9:133231492-133253556 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	133231492	133234491	+	NA	NA	NA	NA	HMCN2	NA	chr9:133223389-133263556	inter
CUST_23975_PI429285431	0.9258482	A	1.8700824	A	0.519705344336166	0	lncRNA	25530-1_{1..719}	lnc-KLRF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLRF2-1:1	chr12	 10021929	 10022647	+	lnc-KLRF2-1	lnc-KLRF2-1:1	ENSG00000255882.1	RP11-290C10.1	CLEC2B	NA	chr12:10011929-10022458	inner
CUST_7769_PI429285431	8.175216	P	8.606073	P	0.741820992608086	0	lncRNA	9395-1_{1..2108}	lnc-PSMG4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PSMG4-1:1	chr6	  3286975	  3289082	+	lnc-PSMG4-1	lnc-PSMG4-1:1	ENSG00000246738	ENST00000499159	SLC22A23	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SLC22A23:range=chr6:3273289-34567935'pad=0,hg19_refFlat_SLC22A23:range=chr6:3273289-34567935'pad=0 3'pad=0 strand=- repeatMasking=none,-98.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_SLC22A23:range=chr6:3273289-34104915'pad=0,hg19_refFlat_SLC22A23:range=chr6:3273289-34104915'pad=0 3'pad=0 strand=- repeatMasking=none,-98.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50chr6:3276975-3298894"	NA	inner
CUST_16076_PI429285431	2.578885	A	2.9585695	A	0.768605657050617	0	lncRNA	17779-1_{1..262}	lnc-SERAC1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERAC1-5:1	chr6	158226507	158226768	-	lnc-SERAC1-5	lnc-SERAC1-5:1	XLOC_005894	linc-C6orf35	NA	NA	NA	inter
CUST_44335_PI429285431	8.609275	P	8.61851	P	0.993619229913556	0	lncRNA	48964-1_{1..3000}	"gi|217272881|ref|NR_024569.1| Homo sapiens uncharacterized LOC100130872 (LOC100130872), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|217272881|ref|NR_024569.1| Homo sapiens uncharacterized LOC100130872 (LOC100130872), non-coding RNA"	Chr4	  1189571	  1192570	-	100130872	NR_024569.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30"	NA	inter
CUST_24534_PI429285431	0.9203771	A	0.9207596	A	0.999734906346969	0	lncRNA	26084-1_{1..457}	lnc-KIAA0895-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0895-1:1	chr7	 36270342	 36270798	-	lnc-KIAA0895-1	lnc-KIAA0895-1:1	ENSG00000229679.1	AC007327.5	EEPD1	NA	chr7:36260342-36280716	inner
CUST_43907_PI429285431	1.5187633	A	1.8572606	A	0.790864641497848	0	lncRNA	48621-1_{1..1382}	"gi|335892821|ref|NR_038386.1| Homo sapiens uncharacterized LOC728537 (LOC728537), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|335892821|ref|NR_038386.1| Homo sapiens uncharacterized LOC728537 (LOC728537), non-coding RNA"	Chr2	 98286206	 98287587	+	728537	NR_038386.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
CUST_37250_PI429285431	5.6423507	P	5.5570297	P	1.06092377090784	0	lncRNA	38357-1_{1..370}	n345681|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1230|NULL|-1.3455100|-0.1626233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345681|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1230|NULL|-1.3455100|-0.1626233	chr1	143906068	143906437	-	NA	NA	NA	NA	FAM72D	NA	chr1:143896452-143913143	inner
CUST_394_PI429201921	9.330419	P	9.008619	P	1.24988901916447	0	lncRNA	247-4_{9001..9592}	TC01004143.hg.1	TCONS_l2_00000051-XLOC_l2_000033 // Broad TUCP // linc-C1orf93 chr1:+:2499253-2508846 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:2499253-2508846	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00000051-XLOC_l2_000033	linc-C1orf93	chr1	  2499253	  2508846	+	NA	NA	NA	NA	NFIA	NA	chr1:61704666-61729182	Unknown
CUST_6508_PI429285431	1.9539645	A	1.1326351	A	1.76703351073668	0	lncRNA	6450-1_{1..567}	"transcript_id ""ENST00000586819.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586819.1"" | genecode_v17"	chr19	 38308566	 38309132	+	ENSG00000267640.1	ENST00000586819.1	CTD-2554C21.2	CTD-2554C21.2-004	NA	NA	NA	inter
CUST_15215_PI429285431	0.89586514	A	0.8923607	A	1.00243204534139	0	lncRNA	16885-1_{1..280}	lnc-DTHD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DTHD1-2:1	chr4	 34862048	 34862327	+	lnc-DTHD1-2	lnc-DTHD1-2:1	XLOC_003505	linc-DTHD1-1	NA	NA	NA	inter
CUST_50154_PI429285431	8.763753	P	8.783562	P	0.986363281580724	0	lncRNA	53879-1_{1..412}	hg19_lincRNAsTranscripts_TCONS_l2_00029896 range=chr9:2943507-2949586 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029896 range=chr9:2943507-2949586 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	  2943507	  2943918	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00802448	1.3534471	A	2.4693606	A	0.461398909698648	0	lncRNA	TCONS_00010962	NA	NA	NA	NA	XLOC_004881	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004881), lincRNA [TCONS_00010962]"	chr5:72570680-72570621	hs|5q13.2	Agilent_HUMAN_G3V2	TCONS_00010962	TCONS_00010962	chr5	 72570621	 72570680	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29596_PI429285431	3.1824725	P	2.4383342	A	1.67497353406111	0	lncRNA	31357-1_{1..335}	n333109|AF329942|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077633|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077633|1.1913500|-0.1338110	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333109|AF329942|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077633|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077633|1.1913500|-0.1338110	chr10	 17201152	 17201486	-	NA	NA	NA	NA	TRDMT1	NA	chr10:17191152-17226669	inner
CUST_27179_PI429285431	0.93065417	A	0.92776513	A	1.00200453633266	0	lncRNA	28719-1_{1..627}	n324308|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043074|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043074|-0.9507630|-0.1124017	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324308|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043074|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043074|-0.9507630|-0.1124017	chr6	167237175	167237801	+	NA	NA	NA	NA	RPS6KA2	NA	chr6:167227175-167248313	inner
CUST_26313_PI429285431	1.3188857	A	1.5677158	A	0.841578585546045	0	lncRNA	27820-1_{1..715}	lnc-EME1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EME1-1:1	chr17	 48474601	 48475315	+	lnc-EME1-1	lnc-EME1-1:1	ENSG00000253102.1	RP1-117B12.4	LRRC59	"hg19_refFlat_LRRC59:range=chr17:48460349-484746785'pad=0,hg19_refFlat_LRRC59:range=chr17:48460349-484746785'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00chr17:48464601-48474914"	NA	inner
CUST_1000_PI429285431	6.1644278	P	6.3024535	P	0.908761927726091	0	lncRNA	989-1_{1..674}	"transcript_id ""ENST00000433219.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433219.1"" | genecode_v17"	chr2	105940667	105941340	+	ENSG00000235319.1	ENST00000433219.1	AC012360.4	AC012360.4-001	TGFBRAP1	NA	chr2:105930667-105946148	inner
CUST_19225_PI429285431	0.89492565	A	1.2820942	A	0.764628802172585	0	lncRNA	20895-1_{1..510}	lnc-PKMYT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PKMYT1-1:1	chr16	  3004193	  3004702	-	lnc-PKMYT1-1	lnc-PKMYT1-1:1	ENSG00000262482.1	LA16c-321D4.2	KREMEN2	NA	chr16:3014217-3014277	inter
CUST_45838_PI429285431	4.9230585	P	4.787194	P	1.09875101644963	0	lncRNA	50172-1_{1..3000}	"gi|226437604|ref|NR_027473.1| Homo sapiens lysine (K)-specific demethylase 2A (KDM2A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226437604|ref|NR_027473.1| Homo sapiens lysine (K)-specific demethylase 2A (KDM2A), transcript variant 2, non-coding RNA"	Chr11	 66886740	 66889739	+	22992	NR_027473.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004011	1.0284259	A	2.2406528	A	0.431601893720038	0	lncRNA	ENST00000515556	NA	NA	NA	NA	XLOC_004423	NA	ENST00000515556	NA	NA	"BROAD Institute lincRNA (XLOC_004423), lincRNA [TCONS_00009417]"	chr5:72584550-72584609	hs|5q13.2	Agilent_HUMAN_G3V2	ENST00000515556	ENST00000515556	chr5	 72584550	 72584609	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27969_PI429285431	0.8953044	A	0.89835864	A	0.997885201499327	0	lncRNA	29573-1_{1..545}	n325218|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329209|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329209|-1.1399400|-0.2885657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325218|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329209|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329209|-1.1399400|-0.2885657	chr2	103848635	103849179	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37269_PI429285431	6.7185054	P	6.612336	P	1.07636650338498	0	lncRNA	38377-1_{1..304}	n345708|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1257|NULL|-1.4450700|-0.2625847	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345708|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1257|NULL|-1.4450700|-0.2625847	chr7	 55840871	 55841174	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006617	1.8844879	A	2.4474556	A	0.676908294422128	0	lncRNA	ENST00000422206	NA	BC037970	NA	Hs.650139	XLOC_008556	NA	ENST00000422206	THC2608972	NA	"BROAD Institute lincRNA (XLOC_008556), lincRNA [TCONS_00017713]"	chr10:92260965-92261024	hs|10q23.31	Agilent_HUMAN_G3V2	ENST00000422206	ENST00000422206	chr10	 92260965	 92261024	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36670_PI429285431	0.89724326	A	0.89171934	A	1.00383622913579	0	lncRNA	37856-3_{6001..8502}	n345161|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_710|NULL|-1.3467000|-0.3548475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345161|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_710|NULL|-1.3467000|-0.3548475	chr12	 57751328	 57753829	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.34;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-18.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10"	NA	inter
CUST_33692_PI429285431	0.89798164	A	0.89323723	A	1.00329398770814	0	lncRNA	35253-1_{1..2303}	n340468|AL117656|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2929|NULL|-1.0633500|-0.3396499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340468|AL117656|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2929|NULL|-1.0633500|-0.3396499	chr5	 54717353	 54719655	-	NA	NA	NA	NA	PPAP2A	"hg19_refFlat_SKIV2L2:range=chr5:54603842-547206005'pad=0,hg19_refFlat_SKIV2L2:range=chr5:54603842-547206005'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90chr5:54720682-54729628"	NA	inner
CUST_11726_PI429285431	3.8253205	P	4.379805	P	0.680900312297597	0	lncRNA	13305-1_{1..366}	lnc-DNAJC19-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAJC19-2:1	chr3	181160162	181160527	-	lnc-DNAJC19-2	lnc-DNAJC19-2:1	XLOC_003343	linc-DNAJC19-6	NA	NA	NA	inter
LNCA_21_P0007132	0.91328466	A	0.900118	A	1.00916820613079	0	lncRNA	ENST00000534076	NA	BC027619	NA	Hs.249366	XLOC_009367	NA	ENST00000534076	NA	NA	"BROAD Institute lincRNA (XLOC_009367), lincRNA [TCONS_00019117]"	chr11:8033372-8033313	hs|11p15.4	Agilent_HUMAN_G3V2	ENST00000534076	ENST00000534076	chr11	  8033313	  8033372	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23473_PI429285431	0.92304015	A	0.9189108	A	1.00286634745082	0	lncRNA	25040-1_{1..326}	lnc-ELP4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ELP4-1:1	chr11	 32093526	 32093851	+	lnc-ELP4-1	lnc-ELP4-1:1	ENSG00000254627.1	RP1-17K7.1	NA	NA	NA	inter
LNCA_21_P0003678	4.024734	P	4.119788	P	0.936237203469041	0	lncRNA	TCONS_00008328	NA	NA	NA	NA	XLOC_003782	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003782), lincRNA [TCONS_00008328]"	chr4:174432651-174432710	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_00008328	TCONS_00008328	chr4	174432651	174432710	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32172_PI429285431	0.89293873	A	0.8892858	A	1.00253522639541	0	lncRNA	33872-1_{1..3000}	n338744|BC041877|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1165|NULL|-1.0556600|-0.3587494	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n338744|BC041877|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1165|NULL|-1.0556600|-0.3587494	chr13	 54389553	 54392552	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24814_PI429285431	2.1201298	A	1.7710451	A	1.27375225457365	0	lncRNA	26354-1_{1..528}	lnc-SEPHS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEPHS2-1:1	chr16	 30492542	 30493069	-	lnc-SEPHS2-1	lnc-SEPHS2-1:1	ENSG00000260487.1	RP11-297C4.3	ITGAL	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr16:30483983-30502667"	NA	inner
CUST_47883_PI429285431	6.266971	P	6.1333284	P	1.09706012832707	0	lncRNA	51778-1_{1..1922}	"gi|410171582|ref|XR_171263.1| PREDICTED: Homo sapiens uncharacterized LOC101060657 (LOC101060657), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171582|ref|XR_171263.1| PREDICTED: Homo sapiens uncharacterized LOC101060657 (LOC101060657), misc_RNA"	NA	NA	NA	NA	NA	XR_171263.1	NA	NA	NA	NA	NA	Unknown
CUST_13_PI429285431	2.674336	A	3.2257528	P	0.682349697080765	0	lncRNA	12-1_{1..549}	"transcript_id ""ENST00000412872.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000412872.3"" | genecode_v17"	chr6	 68597538	 68598086	-	ENSG00000227706.3	ENST00000412872.3	RP11-301G19.1	RP11-301G19.1-001	NA	NA	NA	inter
CUST_17184_PI429285431	0.9379126	A	0.94122	A	0.997710110820545	0	lncRNA	18895-1_{1..491}	lnc-ERICH1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERICH1-3:1	chr8	  1250394	  1250884	-	lnc-ERICH1-3	lnc-ERICH1-3:1	XLOC_006971	linc-ERICH1-6	NA	NA	NA	inter
CUST_32603_PI429285431	1.4751703	A	0.91171545	A	1.47780390919688	0	lncRNA	34263-2_{3001..3751}	n339223|AK124871|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1655|NULL|-1.0995300|-0.1870957	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339223|AK124871|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1655|NULL|-1.0995300|-0.1870957	chr2	242431942	242432692	-	NA	NA	NA	NA	FARP2	"hg19_refFlat_FARP2:range=chr2:242312523-2424335405'pad=0,hg19_refFlat_FARP2:range=chr2:242312523-2424335405'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.50chr2:242418942-242434256"	NA	inner
CUST_2150_PI429285431	0.91817504	A	0.92147106	A	0.997717980803819	0	lncRNA	2141-1_{1..820}	"transcript_id ""ENST00000506656.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506656.1"" | genecode_v17"	chr5	 45035301	 45036120	+	ENSG00000248148.1	ENST00000506656.1	RP11-357F12.1	RP11-357F12.1-001	NA	NA	NA	inter
CUST_16686_PI429285431	1.5085752	A	1.0296794	A	1.39367657545682	0	lncRNA	18390-1_{1..477}	lnc-ANKRD36C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD36C-2:1	chr2	 96383793	 96384269	-	lnc-ANKRD36C-2	lnc-ANKRD36C-2:1	XLOC_002206	linc-TRIM43B-3	NA	NA	NA	inter
CUST_13080_PI429285431	1.8037269	A	2.4076097	A	0.657980712623581	0	lncRNA	14707-1_{1..3000}	lnc-AC009120.10.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC009120.10.1-2:1	chr16	 74302755	 74305754	+	lnc-AC009120.10.1-2	lnc-AC009120.10.1-2:1	XLOC_011789	linc-PSMD7-1	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-24.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.51;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60"	NA	inter
CUST_46538_PI429285431	6.6669106	P	6.2818995	P	1.3058698343262	0	lncRNA	50725-2_{3001..6000}	"gi|298676494|ref|NR_033738.1| Homo sapiens chondroitin sulfate proteoglycan 4 pseudogene (LOC440300), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298676494|ref|NR_033738.1| Homo sapiens chondroitin sulfate proteoglycan 4 pseudogene (LOC440300), non-coding RNA"	Chr15	 84863600	 84866599	+	440300	NR_033738.1	NA	NA	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0,hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0,hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0,hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0,hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_GOLGA2:range=chr9:131019346-1310382555'pad=0,hg19_refFlat_GOLGA2:range=chr9:131019346-1310382555'pad=0 3'pad=0 strand=- repeatMasking=none,-101.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0,hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80"	NA	inter
CUST_34800_PI429285431	1.706479	A	1.1311255	A	1.49004251983214	0	lncRNA	36236-1_{1..2435}	n341707|BC042427|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4179|NULL|-1.2545800|-0.3326070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341707|BC042427|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4179|NULL|-1.2545800|-0.3326070	chr9	 81750336	 81752770	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003261	0.93843156	A	1.8938981	A	0.51567480330979	0	lncRNA	TCONS_00007042	NA	NA	NA	NA	XLOC_002926	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002926), lincRNA [TCONS_00007042]"	chr3:176262587-176262731	hs|3q26.32	Agilent_HUMAN_G3V2	TCONS_00007042	TCONS_00007042	chr3	176262587	176262731	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10812_PI429285431	4.3399267	P	3.9473438	P	1.3127415416314	0	lncRNA	12347-1_{1..579}	lnc-NDST3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDST3-5:1	chr4	118293752	118294330	+	lnc-NDST3-5	lnc-NDST3-5:1	XLOC_003658	linc-NDST3-3	NA	NA	NA	inter
CUST_40992_PI429285431	2.9794302	P	3.4279363	P	0.732801265505128	0	lncRNA	41660-1_{1..617}	n411147|NR_038975|lncRNA|Homosapiens||RefGeneNoncode|NR_038975||-1.0252400|-0.1795837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411147|NR_038975|lncRNA|Homosapiens||RefGeneNoncode|NR_038975||-1.0252400|-0.1795837	chr9	127420714	127421330	+	NA	NA	NA	NA	NR6A1	NA	chr9:127410714-127470907	inner
CUST_18837_PI429285431	3.4670725	P	3.191351	P	1.21059936548755	0	lncRNA	20531-1_{1..644}	lnc-LRRC63-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LRRC63-1:1	chr13	 46687319	 46687962	+	lnc-LRRC63-1	lnc-LRRC63-1:1	ENSG00000235903	CPB2-AS1	CPB2	NA	chr13:46677319-46679211	inter
CUST_24673_PI429285431	1.6244872	A	1.1986325	A	1.34336812254753	0	lncRNA	26220-1_{1..648}	lnc-MB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MB-1:1	chr22	 35626991	 35627638	-	lnc-MB-1	lnc-MB-1:1	ENSG00000233080.2	CTA-714B7.5	NA	NA	NA	inter
CUST_43233_PI429285431	0.90133893	A	0.89649546	A	1.00336287940859	0	lncRNA	48049-1_{1..644}	ENST00000596451 havana:sense_intronic chromosome:GRCh37:19:53100952:53102140:-1 gene:ENSG00000268970 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000596451 havana:sense_intronic chromosome:GRCh37:19:53100952:53102140:-1 gene:ENSG00000268970 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 53100952	 53101595	-	ENSG00000268970	ENST00000596451	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-17.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-15.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-25.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90"	NA	inter
CUST_41277_PI429285431	2.655341	A	2.4154832	A	1.1808762619996	0	lncRNA	42252-1_{1..79}	ENST00000408283 ncrna:miRNA chromosome:GRCh37:21:22770068:22770146:-1 gene:ENSG00000221210 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408283 ncrna:miRNA chromosome:GRCh37:21:22770068:22770146:-1 gene:ENSG00000221210 gene_biotype:miRNA transcript_biotype:miRNA	chr21	 22770068	 22770146	-	ENSG00000221210	ENST00000408283	NA	NA	NCAM2	NA	chr21:22760068-22780146	inner
CUST_30553_PI429285431	2.6030183	A	2.535429	A	1.04796410329491	0	lncRNA	32334-1_{1..204}	n335732|X00086|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000320849|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000320849|0.4180570|-0.2497241	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335732|X00086|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000320849|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000320849|0.4180570|-0.2497241	chr4	155529659	155529862	-	NA	NA	NA	NA	FGG	NA	chr4:155525286-155533902	inner
CUST_40808_PI429285431	0.91130894	A	1.0465218	A	0.910535480263168	0	lncRNA	41514-1_{1..880}	n410571|NR_037839|lncRNA|Homosapiens||RefGeneNoncode|NR_037839||3.4276200|-0.1055147	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410571|NR_037839|lncRNA|Homosapiens||RefGeneNoncode|NR_037839||3.4276200|-0.1055147	chr22	 23701792	 23702671	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49687_PI429285431	2.1913848	A	1.7110493	A	1.39506805293283	0	lncRNA	53464-1_{1..675}	hg19_lincRNAsTranscripts_TCONS_l2_00025620 range=chr7:5862845-5886591 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025620 range=chr7:5862845-5886591 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  5862845	  5863519	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46496_PI429285431	1.5221546	A	1.887971	A	0.776029606932978	0	lncRNA	50690-1_{1..2527}	"gi|223972678|ref|NR_026949.1| Homo sapiens long intergenic non-protein coding RNA 277 (LINC00277), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223972678|ref|NR_026949.1| Homo sapiens long intergenic non-protein coding RNA 277 (LINC00277), non-coding RNA"	Chr15	 69373190	 69375716	+	283673	NR_026949.1	NA	NA	NA	NA	NA	inter
CUST_3811_PI429285431	0.94798934	A	0.94953096	A	0.998932001160652	0	lncRNA	3779-1_{1..475}	"transcript_id ""ENST00000450247.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000450247.1"" | genecode_v17"	chr10	119321595	119322069	-	ENSG00000235198.1	ENST00000450247.1	CTA-109P11.1	CTA-109P11.1-001	NA	NA	NA	inter
CUST_16326_PI429285431	0.8984824	A	0.8947526	A	1.0025886451248	0	lncRNA	18027-1_{1..710}	lnc-RCC2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RCC2-2:1	chr1	 18336430	 18337139	-	lnc-RCC2-2	lnc-RCC2-2:1	XLOC_000724	linc-RCC2-2	NA	NA	NA	inter
CUST_23134_PI429285431	0.9095875	A	0.9011867	A	1.00583997740044	0	lncRNA	24705-1_{1..532}	lnc-TGM5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TGM5-1:1	chr15	 43477200	 43477731	-	lnc-TGM5-1	lnc-TGM5-1:1	ENSG00000261687.1	RP11-473C18.3	TMEM62	"hg19_refFlat_TMEM62:range=chr15:43426001-434767845'pad=0,hg19_refFlat_TMEM62:range=chr15:43426001-434767845'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60chr15:43467200-43477342"	NA	inner
CUST_20683_PI429285431	5.4544954	P	5.527253	P	0.950818843323474	0	lncRNA	22319-1_{1..489}	lnc-DEFB124-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-DEFB124-1:1	chr20	 30160945	 30161433	-	lnc-DEFB124-1	lnc-DEFB124-1:1	ENSG00000230613.1	HM13-AS1	HM13	NA	chr20:30150945-30157370	inter
CUST_39176_PI429285431	11.324271	P	11.266869	P	1.04059018155288	0	lncRNA	40151-2_{3001..3517}	n385915|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009viw.2||8.5806800|-0.1355947	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385915|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009viw.2||8.5806800|-0.1355947	chr1	    17406	    17922	-	NA	NA	NA	NA	LOC100652771	NA	chr1:12190-13639	inter
CUST_44920_PI429285431	0.92281216	A	0.92545575	A	0.99816928085928	0	lncRNA	49436-1_{1..2827}	"gi|374349254|ref|NR_002833.2| Homo sapiens dpy-19-like 2 pseudogene 1 (C. elegans) (DPY19L2P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374349254|ref|NR_002833.2| Homo sapiens dpy-19-like 2 pseudogene 1 (C. elegans) (DPY19L2P1), non-coding RNA"	NA	NA	NA	NA	NA	NR_002833.2	NA	NA	NA	NA	NA	Unknown
CUST_42959_PI429285431	7.25684	P	7.1447444	P	1.08079701854093	0	lncRNA	46092-1_{1..128}	ENST00000391285 ncrna:snoRNA chromosome:GRCh37:6:111169749:111169876:1 gene:ENSG00000212587 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391285 ncrna:snoRNA chromosome:GRCh37:6:111169749:111169876:1 gene:ENSG00000212587 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	111169749	111169876	+	ENSG00000212587	ENST00000391285	NA	NA	AMD1	NA	chr6:111179442-111179876	inter
CUST_40983_PI429285431	0.9168066	A	0.9272384	A	0.992795306383868	0	lncRNA	41652-1_{1..2023}	n411116|NR_038940|lncRNA|Homosapiens||RefGeneNoncode|NR_038940||-0.8741140|-0.2075621	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411116|NR_038940|lncRNA|Homosapiens||RefGeneNoncode|NR_038940||-0.8741140|-0.2075621	chr10	105506536	105508558	+	NA	NA	NA	NA	SH3PXD2A	NA	chr10:105496536-105525167	inter
CUST_45924_PI429285431	1.504248	A	1.3693098	A	1.09804577634636	0	lncRNA	50232-1_{1..3000}	"gi|349501062|ref|NR_045204.1| Homo sapiens checkpoint kinase 1 (CHEK1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|349501062|ref|NR_045204.1| Homo sapiens checkpoint kinase 1 (CHEK1), transcript variant 5, non-coding RNA"	Chr11	125495031	125498030	+	1111	NR_045204.1	NA	NA	NA	"hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30"	NA	inter
CUST_21518_PI429285431	0.9233468	A	0.9106558	A	1.00883553580755	0	lncRNA	23136-1_{1..1081}	lnc-DRD2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DRD2-2:1	chr11	113144346	113145426	-	lnc-DRD2-2	lnc-DRD2-2:1	ENSG00000227487.3	RP11-839D17.2	NCAM1	"hg19_refFlat_NCAM1:range=chr11:112832334-1131461095'pad=0,hg19_refFlat_NCAM1:range=chr11:112832334-1131461095'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.30chr11:113134346-113149158"	NA	inner
CUST_4933_PI429285431	1.4052086	A	0.92028785	A	1.39950898577631	0	lncRNA	4876-1_{1..544}	"transcript_id ""ENST00000557070.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557070.1"" | genecode_v17"	chr14	 87819414	 87819957	-	ENSG00000258859.1	ENST00000557070.1	RP11-594C13.1	RP11-594C13.1-001	NA	NA	NA	inter
CUST_18758_PI429285431	6.0301676	P	5.558134	P	1.38706327310551	0	lncRNA	20454-1_{1..451}	lnc-AL592284.1-1:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL592284.1-1:16	chr1	144621447	144621897	+	lnc-AL592284.1-1	lnc-AL592284.1-1:16	ENSG00000225241	NBPF8	NBPF9	NA	chr1:144614959-144621685	inner
CUST_11285_PI429285431	1.891133	A	3.1537266	P	0.416793995834993	0	lncRNA	12845-1_{1..709}	lnc-SRP9-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRP9-1:3	chr1	225903748	225904456	+	lnc-SRP9-1	lnc-SRP9-1:3	XLOC_000587	linc-SRP9-1	NA	NA	NA	inter
CUST_46195_PI429285431	4.2657795	P	3.4267776	P	1.78881215939286	0	lncRNA	50441-1_{1..3000}	"gi|401709977|ref|NR_073109.1| Homo sapiens NHL repeat containing 3 (NHLRC3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|401709977|ref|NR_073109.1| Homo sapiens NHL repeat containing 3 (NHLRC3), transcript variant 3, non-coding RNA"	Chr13	 39612448	 39615447	+	387921	NR_073109.1	NA	NA	NA	NA	NA	inter
CUST_20017_PI429285431	0.9241545	A	0.91392744	A	1.00711404323371	0	lncRNA	21670-1_{1..591}	lnc-ADAMTS14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAMTS14-1:1	chr10	 72577888	 72578478	+	lnc-ADAMTS14-1	lnc-ADAMTS14-1:1	ENSG00000233104.1	RP11-432J9.4	SGPL1	NA	chr10:72575704-72587968	inner
LNCA_21_P0001204	0.968034	A	0.9226361	A	1.0319677601311	0	lncRNA	ENST00000432976	NA	NA	NA	NA	XLOC_001128	NA	ENST00000432976	NA	NA	"BROAD Institute lincRNA (XLOC_001128), lincRNA [TCONS_00000701]"	chr1:188674827-188674768	hs|1q31.1	Agilent_HUMAN_G3V2	ENST00000432976	ENST00000432976	chr1	188674768	188674827	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34783_PI429285431	3.7681854	P	4.070077	P	0.811188103653051	0	lncRNA	36220-1_{1..2925}	n341690|BX641092|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4161|NULL|-0.3549390|-0.2899042	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341690|BX641092|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4161|NULL|-0.3549390|-0.2899042	chr9	 37564531	 37567455	-	NA	NA	NA	NA	FBXO10	"hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00chr9:37554531-37576250"	NA	inner
CUST_46744_PI429285431	6.1352367	P	6.3696833	P	0.850010990329574	0	lncRNA	50896-1_{1..3000}	"gi|379991134|ref|NR_046431.1| Homo sapiens CTS telomere maintenance complex component 1 (CTC1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">gi|379991134|ref|NR_046431.1| Homo sapiens CTS telomere maintenance complex component 1 (CTC1), transcript variant 2, non-coding RNA"	Chr17	  8128139	  8131138	-	80169	NR_046431.1	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80"	NA	inter
CUST_19123_PI429285431	3.678941	P	4.2014413	P	0.696164281552439	0	lncRNA	20803-1_{1..1696}	lnc-ZCCHC13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-ZCCHC13-1:1	NA	NA	     1695	NA	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20"	NA	Unknown
CUST_3199_PI429285431	5.86825	P	6.12127	P	0.839138004103075	0	lncRNA	3178-1_{1..2126}	"transcript_id ""ENST00000502766.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502766.2"" | genecode_v17"	chr8	 80681607	 80683732	-	ENSG00000249328.2	ENST00000502766.2	RP11-26J3.1	RP11-26J3.1-001	HEY1	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00chr8:80676245-80680098"	NA	inter
CUST_14027_PI429285431	6.4065294	P	4.8781166	P	2.88468302253403	0	lncRNA	15675-1_{1..1357}	lnc-RP11-150O12.6.1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-150O12.6.1-1:8	chr8	 37350956	 37352312	-	lnc-RP11-150O12.6.1-1	lnc-RP11-150O12.6.1-1:8	XLOC_007053	linc-DUSP26-5	NA	NA	NA	inter
CUST_44561_PI429285431	0.9362915	A	0.9177399	A	1.01294202155916	0	lncRNA	49144-1_{1..3000}	"gi|380862374|ref|NR_046462.1| Homo sapiens family with sequence similarity 169, member A (FAM169A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|380862374|ref|NR_046462.1| Homo sapiens family with sequence similarity 169, member A (FAM169A), transcript variant 2, non-coding RNA"	Chr5	 74073399	 74076398	-	26049	NR_046462.1	NA	NA	NA	NA	NA	inter
CUST_8290_PI429285431	3.5966387	P	3.964368	P	0.775001334647643	0	lncRNA	9875-1_{1..1947}	lnc-TSHZ2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TSHZ2-1:1	chr20	 52190897	 52192843	+	lnc-TSHZ2-1	lnc-TSHZ2-1:1	ENSG00000197670	RP4-724E16.2	ZNF217	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.61;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80chr20:52183610-52199636"	NA	inner
CUST_6578_PI429285431	1.0811948	A	0.91048884	A	1.12560914898235	0	lncRNA	6526-1_{1..446}	"transcript_id ""ENST00000595160.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595160.1"" | genecode_v17"	chr19	 54290851	 54291296	-	ENSG00000269877.1	ENST00000595160.1	MIR371B	MIR371B-001	NLRP12	NA	chr19:54296838-54301423	inter
CUST_5920_PI429285431	1.6759918	A	1.245373	A	1.34781155552892	0	lncRNA	5848-1_{1..1841}	"transcript_id ""ENST00000587125.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000587125.1"" | genecode_v17"	chr17	 58039724	 58041564	-	ENSG00000267104.1	ENST00000587125.1	TBC1D3P1-DHX40P1	TBC1D3P1-DHX40P1-001	RNFT1	NA	chr17:58029724-58042117	inter
CUST_10186_PI429285431	5.586472	P	6.062697	P	0.718856146230706	0	lncRNA	11711-1_{1..293}	lnc-SEPT9-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SEPT9-3:7	chr17	 75558835	 75559127	+	lnc-SEPT9-3	lnc-SEPT9-3:7	XLOC_012317	linc-TNRC6C-3	LOC100652922	NA	chr17:75548835-75550976	inter
CUST_22221_PI429285431	4.58982	P	3.179147	A	2.65861154949042	0	lncRNA	23821-1_{1..1059}	lnc-CENPJ-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CENPJ-1:1	chr13	 25512328	 25513386	-	lnc-CENPJ-1	lnc-CENPJ-1:1	ENSG00000228009.1	LINC00357	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-19.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	inter
CUST_13759_PI429285431	0.90370953	A	0.90822816	A	0.996872824187545	0	lncRNA	15404-1_{1..3000}	lnc-PTPN14-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPN14-2:1	chr1	214452057	214455056	-	lnc-PTPN14-2	lnc-PTPN14-2:1	XLOC_001200	linc-ANGEL2-1	SMYD2	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0,hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40chr1:214454565-214462637"	NA	inter
CUST_32385_PI429285431	3.1169841	P	2.2411652	A	1.83504939833197	0	lncRNA	34062-1_{1..2803}	n338976|AK026778|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1404|NULL|-0.8854990|-0.3246477	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338976|AK026778|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1404|NULL|-0.8854990|-0.3246477	chr2	145251831	145254633	-	NA	NA	NA	NA	ZEB2	NA	chr2:145241831-145264445	inner
CUST_36757_PI429285431	0.908159	A	0.9069356	A	1.00084835591118	0	lncRNA	37930-1_{1..421}	n345237|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_786|NULL|-1.3825100|-0.4104154	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345237|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_786|NULL|-1.3825100|-0.4104154	chr13	110303603	110304023	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28989_PI429285431	0.92110515	A	1.0577135	A	0.909655163366235	0	lncRNA	30712-1_{1..1396}	n326472|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033222|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033222|-1.1096000|-0.3786289	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326472|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033222|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033222|-1.1096000|-0.3786289	chr1	116263519	116264914	+	NA	NA	NA	NA	CASQ2	"hg19_refFlat_CASQ2:range=chr1:116243862-1163111625'pad=0,hg19_refFlat_CASQ2:range=chr1:116243862-1163111625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00chr1:116253519-116280052"	NA	inner
CUST_35442_PI429285431	0.9179728	A	0.91101116	A	1.00483710232841	0	lncRNA	36849-1_{1..343}	n342509|X64988|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5004|NULL|1.6375100|-0.3261041	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342509|X64988|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5004|NULL|1.6375100|-0.3261041	chr3	 97851915	 97852257	+	NA	NA	NA	NA	OR5H1	NA	chr3:97841915-97852483	inner
LNCA_21_P0009604	5.2952886	P	4.920809	P	1.29637185109528	0	lncRNA	TCONS_00026612	NA	NA	NA	NA	XLOC_012663	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012663), lincRNA [TCONS_00026612]"	chr18:36907032-36907091	hs|18q12.2	Agilent_HUMAN_G3V2	TCONS_00026612	TCONS_00026612	chr18	 36907032	 36907091	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14440_PI429285431	0.916619	A	0.906321	A	1.007163566123	0	lncRNA	16102-1_{1..206}	lnc-FAM110B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM110B-1:2	chr8	 59131474	 59131679	+	lnc-FAM110B-1	lnc-FAM110B-1:2	XLOC_006810	linc-UBXN2B	NA	NA	NA	inter
CUST_17819_PI429285431	1.741315	A	1.6123894	A	1.0934790651509	0	lncRNA	19555-1_{1..1212}	lnc-GATAD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GATAD1-1:1	chr7	 92075651	 92076862	+	lnc-GATAD1-1	lnc-GATAD1-1:1	XLOC_006169	linc-GATAD1	GATAD1	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50chr7:92071391-92086644"	NA	inter
CUST_32891_PI429285431	8.019107	P	6.893156	P	2.1824536275337	0	lncRNA	34518-1_{1..2352}	n339558|BX647619|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2000|NULL|-0.9904900|-0.2822413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339558|BX647619|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2000|NULL|-0.9904900|-0.2822413	chr20	  3907957	  3910308	-	NA	NA	NA	NA	RNF24	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10chr20:3912068-3921562"	NA	inter
CUST_39269_PI429285431	6.271703	P	5.9263763	P	1.27043864230172	0	lncRNA	40241-1_{1..3000}	n386193|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010dko.2||-0.0991530|-0.2996874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n386193|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010dko.2||-0.0991530|-0.2996874	chr18	  5238098	  5241097	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30"	NA	inter
CUST_23351_PI429285431	0.9285752	A	0.91619205	A	1.0086202880402	0	lncRNA	24920-1_{1..331}	lnc-CLN5-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLN5-2:3	chr13	 77661685	 77662015	+	lnc-CLN5-2	lnc-CLN5-2:3	ENSG00000236051.1	MYCBP2-AS1	MYCBP2	"hg19_refFlat_MYCBP2:range=chr13:77619513-779009105'pad=0,hg19_refFlat_MYCBP2:range=chr13:77619513-779009105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10chr13:77651685-77671832"	NA	inner
CUST_7140_PI429285431	0.91213775	A	0.91923887	A	0.995089972481761	0	lncRNA	7076-1_{1..427}	"transcript_id ""ENST00000445253.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000445253.1"" | genecode_v17"	chrY	  9638762	  9639188	+	ENSG00000224075.1	ENST00000445253.1	TTTY22	TTTY22-001	NA	NA	NA	inter
CUST_1753_PI429285431	0.92044055	A	0.907733	A	1.00884710881737	0	lncRNA	1739-1_{1..628}	"transcript_id ""ENST00000529314.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000529314.1"" | genecode_v17"	chr4	 39655027	 39655654	+	ENSG00000255458.1	ENST00000529314.1	RP11-539G18.2	RP11-539G18.2-006	NA	NA	NA	inter
CUST_9975_PI429285431	0.90896326	A	0.91428673	A	0.996316851271812	0	lncRNA	11499-1_{1..448}	lnc-HAUS5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HAUS5-2:1	chr19	 36077923	 36078370	+	lnc-HAUS5-2	lnc-HAUS5-2:1	XLOC_013051	linc-HAUS5	NA	NA	NA	inter
CUST_9264_PI429285431	3.1818194	A	2.799162	A	1.30374109619697	0	lncRNA	10770-1_{1..591}	lnc-MARCKS-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MARCKS-5:3	chr6	114316764	114317354	+	lnc-MARCKS-5	lnc-MARCKS-5:3	ENSG00000228624	RP3-399L15.3	NA	NA	NA	inter
CUST_44940_PI429285431	5.333686	P	4.7933807	P	1.45428023639372	0	lncRNA	49452-1_{1..2424}	"gi|324711025|ref|NR_037917.1| Homo sapiens HUS1 checkpoint homolog (S. pombe) (HUS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|324711025|ref|NR_037917.1| Homo sapiens HUS1 checkpoint homolog (S. pombe) (HUS1), transcript variant 2, non-coding RNA"	Chr7	 48002885	 48005308	-	3364	NR_037917.1	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30"	NA	inter
CUST_43140_PI429285431	1.5675266	A	0.9203476	A	1.56610289208407	0	lncRNA	47954-1_{1..446}	ENST00000602528 havana:sense_intronic chromosome:GRCh37:1:39672184:39672629:1 gene:ENSG00000270040 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602528 havana:sense_intronic chromosome:GRCh37:1:39672184:39672629:1 gene:ENSG00000270040 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr1	 39672184	 39672629	+	ENSG00000270040	ENST00000602528	NA	NA	MACF1	NA	chr1:39662184-39682629	inner
CUST_364_PI429285431	0.92944926	A	0.9178945	A	1.0080413083506	0	lncRNA	356-1_{1..436}	"transcript_id ""ENST00000451149.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451149.1"" | genecode_v17"	chr1	113576295	113576730	+	ENSG00000236066.1	ENST00000451149.1	RP11-389O22.1	RP11-389O22.1-002	NA	NA	NA	inter
LNCA_21_P0008510	2.429765	A	1.2549778	A	2.25759578579055	0	lncRNA	THC2682134	NA	NA	NA	NA	XLOC_010811	NA	NA	THC2682134	NA	"BROAD Institute lincRNA (XLOC_010811), lincRNA [TCONS_00022972]"	chr14:039939522-039939579	hs|14q21.1	Agilent_HUMAN_G3V2	THC2682134	THC2682134	chr14	 39939522	 39939579	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23265_PI429285431	4.029156	P	3.4900951	P	1.45302638439033	0	lncRNA	24837-1_{1..464}	lnc-TAS2R1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TAS2R1-2:4	chr5	  9658787	  9659250	-	lnc-TAS2R1-2	lnc-TAS2R1-2:4	ENSG00000249781.1	CTD-2143L24.1	NA	NA	NA	inter
CUST_33836_PI429285431	0.91920257	A	0.90960157	A	1.00667709917169	0	lncRNA	35384-1_{1..3000}	n340623|AK128174|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3085|NULL|-1.0674300|-0.2430446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340623|AK128174|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3085|NULL|-1.0674300|-0.2430446	chr5	132579642	132582641	+	NA	NA	NA	NA	FSTL4	NA	chr5:132569642-132594473	inner
CUST_8121_PI429285431	5.069612	P	5.313025	P	0.844744524961616	0	lncRNA	9725-1_{1..545}	lnc-AC009336.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC009336.1-2:1	chr2	177053542	177054086	-	lnc-AC009336.1-2	lnc-AC009336.1-2:1	ENSG00000224189	AC009336.23	HOXD1	"hg19_refFlat_HOXD1:range=chr2:177053530-1770548705'pad=0,hg19_refFlat_HOXD1:range=chr2:177053530-1770548705'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.50chr2:177053307-177055635"	NA	inter
CUST_6660_PI429285431	0.9173713	A	1.1037371	A	0.878816705838224	0	lncRNA	6606-1_{1..449}	"transcript_id ""ENST00000431034.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431034.1"" | genecode_v17"	chr20	 21510840	 21511288	+	ENSG00000233492.1	ENST00000431034.1	RP5-984P4.4	RP5-984P4.4-001	NA	NA	NA	inter
LNCA_19_P00319044	1.4406691	A	0.91780025	A	1.43680955563443	0	lncRNA	ENST00000416534	NA	NA	NA	NA	XLOC_l2_007880	NA	ENST00000416534	THC2711418	NA	"BROAD Institute lincRNA (XLOC_l2_007880), lincRNA [TCONS_l2_00015694]"	chr2:8027190-8027131	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000416534	ENST00000416534	chr2	  8027131	  8027190	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28824_PI429285431	11.002226	P	11.3872595	P	0.765761217035588	0	lncRNA	30533-1_{1..476}	n326238|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098641|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098641|0.1480860|-0.1926145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326238|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098641|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098641|0.1480860|-0.1926145	chr1	212205859	212206334	+	NA	NA	NA	NA	INTS7	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40chr1:212195859-212209002"	NA	inter
CUST_21985_PI429285431	0.89972645	A	0.8955376	A	1.00290770877561	0	lncRNA	23593-1_{1..518}	lnc-PTPN14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPN14-1:1	chr1	214530808	214531325	-	lnc-PTPN14-1	lnc-PTPN14-1:1	ENSG00000228470.1	RP11-176D17.3	PTPN14	NA	chr1:214522039-214540958	inner
CUST_44132_PI429285431	0.92838156	A	0.91729033	A	1.00771748223431	0	lncRNA	48795-1_{1..475}	"gi|397139019|ref|XR_158993.1| PREDICTED: Homo sapiens uncharacterized LOC100505877 (LOC100505877), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139019|ref|XR_158993.1| PREDICTED: Homo sapiens uncharacterized LOC100505877 (LOC100505877), misc_RNA"	NA	NA	NA	NA	NA	XR_158993.1	NA	NA	NA	NA	NA	Unknown
CUST_46855_PI429285431	5.5602627	P	6.1590476	P	0.660309862700563	0	lncRNA	50986-1_{1..2305}	"gi|223890250|ref|NR_026901.1| Homo sapiens mitogen-activated protein kinase 8 interacting protein 1 pseudogene (LOC644172), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223890250|ref|NR_026901.1| Homo sapiens mitogen-activated protein kinase 8 interacting protein 1 pseudogene (LOC644172), non-coding RNA"	Chr17	 43677477	 43679781	-	644172	NR_026901.1	NA	NA	NA	NA	NA	inter
CUST_43067_PI429285431	11.736195	P	11.968173	P	0.851466691868156	0	lncRNA	47001-1_{1..126}	ENST00000516179 ncrna:snRNA chromosome:GRCh37:6:160141447:160141572:-1 gene:ENSG00000251988 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516179 ncrna:snRNA chromosome:GRCh37:6:160141447:160141572:-1 gene:ENSG00000251988 gene_biotype:snRNA transcript_biotype:snRNA	chr6	160141447	160141572	-	ENSG00000251988	ENST00000516179	NA	NA	WTAP	NA	chr6:160148152-160151572	inter
LNCA_21_P0001975	0.9243227	A	0.91359895	A	1.00746083141702	0	lncRNA	ENST00000431435	NA	NA	NA	NA	XLOC_001887	NA	ENST00000431435	THC2624636	NA	"BROAD Institute lincRNA (XLOC_001887), lincRNA [TCONS_00003118]"	chr2:226264917-226265281	hs|2q36.3	Agilent_HUMAN_G3V2	ENST00000431435	ENST00000431435	chr2	226264917	226265281	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36220_PI429285431	2.5278668	A	2.6452165	A	0.921879633133587	0	lncRNA	37473-1_{1..2321}	n344763|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_312|NULL|-1.4314500|-0.1715847	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344763|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_312|NULL|-1.4314500|-0.1715847	chr5	170172041	170174361	-	NA	NA	NA	NA	KCNIP1	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00chr5:170162041-170163636"	NA	inter
CUST_38869_PI429285431	1.1466728	A	1.2829311	A	0.909875905390516	0	lncRNA	39857-3_{6001..9000}	n384750|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003lqp.2||1.0828400|-0.2094365	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,UCSC,"	>n384750|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003lqp.2||1.0828400|-0.2094365	chr5	148792439	148795438	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.01;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_C22orf39:range=chr22:19429167-194353225'pad=0,hg19_refFlat_C22orf39:range=chr22:19429167-194353225'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60"	NA	inter
LNCA_21_P0002080	3.1737835	P	2.2664635	A	1.87555815889235	0	lncRNA	ENST00000455716	NA	NA	NA	NA	XLOC_002233	NA	ENST00000455716	NA	NA	"BROAD Institute lincRNA (XLOC_002233), lincRNA [TCONS_00003346]"	chr2:104473496-104473437	hs|2q12.1	Agilent_HUMAN_G3V2	ENST00000455716	ENST00000455716	chr2	104473437	104473496	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3632937	10.333193	P	10.43232	P	0.933597756974942	0	lncRNA	XR_132952	XR_132952	XR_132952	100131262	Hs.657010	LOC100131262	uncharacterized LOC100131262	NA	THC2476426	NA	"PREDICTED: Homo sapiens hypothetical LOC100131262 (LOC100131262), miscRNA [XR_132952]"	chr11:880926-880867	hs|11p15.5	Agilent_HUMAN_G3V2	XR_132952	XR_132952	chr11	   880867	   880926	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10619_PI429285431	1.6921351	A	1.8394978	A	0.902899488637315	0	lncRNA	12150-1_{1..806}	lnc-NR1I2-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR1I2-1:10	chr3	119823623	119824428	+	lnc-NR1I2-1	lnc-NR1I2-1:10	XLOC_002779	linc-NDUFB4-5	NA	"hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0,hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50"	NA	inter
CUST_29051_PI429285431	0.8930167	A	0.89331627	A	0.999792375456079	0	lncRNA	30780-1_{1..382}	n326541|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027493|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027493|-1.1848400|-0.2676035	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326541|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027493|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027493|-1.1848400|-0.2676035	chr1	 84069891	 84070272	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008330	0.9203167	A	0.9079211	A	1.00862899215051	0	lncRNA	TCONS_00022484	NA	NA	NA	NA	XLOC_010811	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010811), lincRNA [TCONS_00022484]"	chr14:39954413-39954472	hs|14q21.1	Agilent_HUMAN_G3V2	TCONS_00022484	TCONS_00022484	chr14	 39954413	 39954472	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36350_PI429285431	0.9157487	A	1.3550309	A	0.737501454622829	0	lncRNA	37576-1_{1..1998}	n344873|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_422|NULL|-1.5197100|-0.2620507	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n344873|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_422|NULL|-1.5197100|-0.2620507	chr6	 44446536	 44448533	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10286_PI429285431	4.7305374	P	4.1064715	P	1.54121261523405	0	lncRNA	11812-1_{1..527}	lnc-MDM1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MDM1-1:9	chr12	 68827634	 68828160	-	lnc-MDM1-1	lnc-MDM1-1:9	XLOC_010117	linc-MDM1-1	NA	NA	NA	inter
LNCA_21_P0012526	6.844718	P	6.639245	P	1.15306432690831	0	lncRNA	ENST00000415451	NA	NA	NA	NA	XLOC_l2_010061	NA	ENST00000415451	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010061), lincRNA [TCONS_l2_00020038]"	chr3:195274166-195274225	hs|3q29	Agilent_HUMAN_G3V2	ENST00000415451	ENST00000415451	chr3	195274166	195274225	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17073_PI429285431	5.843535	P	6.0682716	P	0.855751250177396	0	lncRNA	18782-1_{1..318}	lnc-ARSJ-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARSJ-1:2	chr4	115285964	115286281	-	lnc-ARSJ-1	lnc-ARSJ-1:2	XLOC_004049	linc-ARSJ	NA	NA	NA	inter
LNCA_21_P0002041	6.783246	P	7.1047378	P	0.800241969842856	0	lncRNA	THC2541016	NA	NA	NA	NA	XLOC_002067	NA	NA	THC2541016	NA	"BROAD Institute lincRNA (XLOC_002067), lincRNA [TCONS_00003262]"	chr2:043228530-043228471	hs|2p21	Agilent_HUMAN_G3V2	THC2541016	THC2541016	chr2	 43228471	 43228530	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36355_PI429285431	0.9296191	A	0.8979898	A	1.02216585169585	0	lncRNA	37579-1_{1..3000}	n344876|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_425|NULL|-1.4343700|-0.3582681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344876|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_425|NULL|-1.4343700|-0.3582681	chr6	119679999	119682998	-	NA	NA	NA	NA	MAN1A1	NA	chr6:119669999-119670926	inter
CUST_10369_PI429285431	3.920841	P	3.6919792	P	1.17191001759104	0	lncRNA	11895-1_{1..469}	lnc-DNAJC19-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAJC19-4:1	chr3	181283291	181283759	-	lnc-DNAJC19-4	lnc-DNAJC19-4:1	XLOC_003345	linc-DNAJC19-3	NA	NA	NA	inter
CUST_29046_PI429285431	3.598492	P	4.291256	P	0.618667434377211	0	lncRNA	30775-1_{1..1835}	n326536|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029206|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029206|-0.3353860|-0.3451075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326536|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029206|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029206|-0.3353860|-0.3451075	chr1	 90001691	 90003525	+	NA	NA	NA	NA	LRRC8B	"hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20chr1:89991691-90018050"	NA	inner
CUST_21621_PI429285431	1.558841	A	1.5328373	A	1.01818781105111	0	lncRNA	23233-2_{3001..3107}	lnc-C16orf42-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf42-1:3	chr16	  1375379	  1375485	-	lnc-C16orf42-1	lnc-C16orf42-1:3	ENSG00000261505.1	LA16c-358B7.3	UBE2I	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_UBE2I:range=chr16:1364032-13747945'pad=0,hg19_refFlat_UBE2I:range=chr16:1364032-13747945'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10chr16:1362379-1375390"	NA	inner
CUST_40867_PI429285431	0.9235696	A	0.919794	A	1.00262047395039	0	lncRNA	41566-1_{1..2128}	n410665|NR_037912|lncRNA|Homosapiens||RefGeneNoncode|NR_037912||3.9860300|-0.3077768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410665|NR_037912|lncRNA|Homosapiens||RefGeneNoncode|NR_037912||3.9860300|-0.3077768	chr10	124591670	124593797	-	NA	NA	NA	NA	CUZD1	NA	chr10:124591671-124605691	inter
CUST_14439_PI429285431	1.2604738	A	0.8899791	A	1.29279605429343	0	lncRNA	16101-1_{1..602}	lnc-CHD9-5:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD9-5:8	chr16	 52313928	 52314529	+	lnc-CHD9-5	lnc-CHD9-5:8	XLOC_011724	linc-CHD9-4	NA	NA	NA	inter
CUST_40373_PI429285431	3.9631498	P	2.973228	A	1.98607733440304	0	lncRNA	41170-1_{1..3000}	n409153|NR_033290|lncRNA|Homosapiens||RefGeneNoncode|NR_033290||4.8885600|-0.2154990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409153|NR_033290|lncRNA|Homosapiens||RefGeneNoncode|NR_033290||4.8885600|-0.2154990	chr4	 38869353	 38872352	+	NA	NA	NA	NA	FAM114A1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50chr4:38869354-38947365"	NA	inter
CUST_21759_PI429285431	4.8535113	P	5.3233395	P	0.722050576363652	0	lncRNA	23369-2_{3001..3426}	lnc-XPC-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XPC-5:1	chr3	 14586380	 14586805	-	lnc-XPC-5	lnc-XPC-5:1	ENSG00000144596.7	GRIP2	GRIP2	NA	chr3:14573380-14583588	inner
CUST_51585_PI429285431	2.2727761	A	2.762027	A	0.712394903255883	0	lncRNA	55150-1_{1..1482}	hg19_lincRNAsTranscripts_TCONS_l2_00011138 range=chr17:20426471-20432422 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011138 range=chr17:20426471-20432422 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 20426471	 20427952	-	NA	NA	NA	NA	CDRT15L2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30chr17:20416807-20442422"	NA	inter
CUST_10134_PI429285431	1.0919214	A	1.0219215	A	1.04971661086225	0	lncRNA	11656-2_{3001..3327}	lnc-VSTM2B-6:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VSTM2B-6:5	chr19	 29464311	 29464637	+	lnc-VSTM2B-6	lnc-VSTM2B-6:5	XLOC_013027	linc-VSTM2B-6	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
CUST_47587_PI429285431	1.5980444	A	0.90542555	A	1.61621468851734	0	lncRNA	51590-1_{1..1918}	"gi|310124203|ref|XR_109761.1| PREDICTED: Homo sapiens chromosome X open reading frame 67 (CXorf67), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124203|ref|XR_109761.1| PREDICTED: Homo sapiens chromosome X open reading frame 67 (CXorf67), misc_RNA"	ChrX	 51149573	 51151490	+	340602	XR_109761.2	NA	NA	NA	NA	NA	inter
CUST_16968_PI429285431	0.90367824	A	0.890426	A	1.00922807129581	0	lncRNA	18680-1_{1..879}	lnc-TMEM55A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM55A-3:1	chr8	 92477853	 92478731	-	lnc-TMEM55A-3	lnc-TMEM55A-3:1	XLOC_007154	linc-TMEM55A-1	NA	NA	NA	inter
CUST_21060_PI429285431	1.3135816	A	0.9028173	A	1.32938990164254	0	lncRNA	22687-1_{1..294}	lnc-C4orf21-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C4orf21-1:2	chr4	113569810	113570103	-	lnc-C4orf21-1	lnc-C4orf21-1:2	ENSG00000249532.1	RP11-148B6.1	LARP7	"hg19_refFlat_LARP7:range=chr4:113565826-1135784835'pad=0,hg19_refFlat_LARP7:range=chr4:113565826-1135784835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_LARP7:range=chr4:113565626-1135784835'pad=0,hg19_refFlat_LARP7:range=chr4:113565626-1135784835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80chr4:113559810-113578742"	NA	inner
CUST_40740_PI429285431	4.289914	P	4.463723	P	0.886499056021554	0	lncRNA	41471-1_{1..3000}	n410453|NR_037596|lncRNA|Homosapiens||RefGeneNoncode|NR_037596||5.0770000|-0.0978022	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410453|NR_037596|lncRNA|Homosapiens||RefGeneNoncode|NR_037596||5.0770000|-0.0978022	chr4	120326677	120329676	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24302_PI429285431	1.2119391	A	1.5327039	A	0.80064532779716	0	lncRNA	25853-1_{1..631}	lnc-FBN2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBN2-6:1	chr5	129241539	129242169	-	lnc-FBN2-6	lnc-FBN2-6:1	ENSG00000251680.1	CTC-575N7.1	CHSY3	"hg19_refFlat_ADAMTS19:range=chr5:128796103-1290729115'pad=0,hg19_refFlat_ADAMTS19:range=chr5:128796103-1290729115'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40chr5:129240523-129251610"	NA	inner
CUST_45631_PI429285431	2.4660792	A	2.207516	A	1.19628671262833	0	lncRNA	50014-1_{1..2158}	"gi|212549569|ref|NR_015429.1| Homo sapiens uncharacterized LOC283050 (LOC283050), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|212549569|ref|NR_015429.1| Homo sapiens uncharacterized LOC283050 (LOC283050), transcript variant 3, non-coding RNA"	Chr10	 80703083	 80705240	-	283050	NR_015429.1	NA	NA	NA	NA	NA	inter
CUST_21173_PI429285431	3.341333	P	3.3642123	P	0.984266365132951	0	lncRNA	22797-1_{1..491}	lnc-GTPBP8-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTPBP8-1:2	chr3	112807470	112807960	+	lnc-GTPBP8-1	lnc-GTPBP8-1:2	ENSG00000240057.1	RP11-572M11.4	NA	"hg19_refFlat_C3orf17:range=chr3:112724383-1127384945'pad=0,hg19_refFlat_C3orf17:range=chr3:112724383-1127384945'pad=0 3'pad=0 strand=- repeatMasking=none,-100.30"	NA	inter
CUST_21742_PI429285431	5.8198123	P	6.1852775	P	0.776218541368718	0	lncRNA	23352-1_{1..311}	lnc-TRIM41-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM41-2:8	chr5	180691053	180691363	+	lnc-TRIM41-2	lnc-TRIM41-2:8	ENSG00000248275.1	CTC-338M12.3	TRIM52	NA	chr5:180683373-180688119	inter
CUST_14351_PI429285431	8.659485	P	8.755778	P	0.935433499362301	0	lncRNA	16009-1_{1..460}	lnc-ZNF8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF8-1:1	chr19	 58788549	 58789008	+	lnc-ZNF8-1	lnc-ZNF8-1:1	XLOC_013182	linc-ZNF8-1	ZNF8	NA	chr19:58790318-58798877	inter
LNCA_21_P0013227	1.0614191	A	0.901862	A	1.11694418927879	0	lncRNA	TCONS_l2_00025965	NA	NA	NA	NA	XLOC_l2_013458	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013458), lincRNA [TCONS_l2_00025965]"	chr7:64661183-64661242	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025965	TCONS_l2_00025965	chr7	 64661183	 64661242	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28988_PI429285431	1.1158317	A	1.2161902	A	0.932801167927601	0	lncRNA	30709-1_{1..621}	n326469|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097629|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097629|-0.5551130|-0.2706807	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326469|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097629|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097629|-0.5551130|-0.2706807	chr1	116796790	116797410	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45101_PI429285431	0.90317994	A	1.120242	A	0.860315621864371	0	lncRNA	49584-1_{1..1963}	"gi|397139253|ref|XR_158818.1| PREDICTED: Homo sapiens uncharacterized LOC100134040 (LOC100134040), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|397139253|ref|XR_158818.1| PREDICTED: Homo sapiens uncharacterized LOC100134040 (LOC100134040), misc_RNA"	Chr7	149736257	149738219	+	100134040	XR_158818.1	NA	NA	NA	NA	NA	inter
CUST_28352_PI429285431	5.1970186	P	5.5559793	P	0.779726082594002	0	lncRNA	30001-1_{1..666}	n325661|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045428|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045428|-1.3355400|-0.4964572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325661|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045428|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045428|-1.3355400|-0.4964572	chr13	 88927862	 88928527	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23316_PI429285431	5.782346	P	5.3886366	P	1.31376697029252	0	lncRNA	24887-1_{1..742}	lnc-IDS-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IDS-1:7	chrX	148614417	148615158	-	lnc-IDS-1	lnc-IDS-1:7	ENSG00000241489.2	AF011889.5	CXorf40A	NA	chrX:148622519-148624672	inter
CUST_12311_PI429285431	5.043037	P	5.2370152	P	0.874191829881098	0	lncRNA	13925-1_{1..503}	lnc-TLE3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TLE3-1:1	chr15	 70316736	 70317238	-	lnc-TLE3-1	lnc-TLE3-1:1	XLOC_011519	linc-ANP32A-2	NA	NA	NA	inter
CUST_4505_PI429285431	0.9057454	A	0.89853495	A	1.00501041343886	0	lncRNA	4454-1_{1..1932}	"transcript_id ""ENST00000542089.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000542089.1"" | genecode_v17"	chr12	128400017	128401948	+	ENSG00000256193.1	ENST00000542089.1	LINC00507	LINC00507-001	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00"	NA	inter
CUST_37682_PI429285431	0.9095109	A	0.9105007	A	0.999314158217747	0	lncRNA	38774-2_{3001..6000}	n346169|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1719|NULL|-1.5531600|-0.2781273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346169|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1719|NULL|-1.5531600|-0.2781273	chr20	 12737865	 12740864	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013119	1.1416341	A	2.2864416	A	0.45225002885258	0	lncRNA	TCONS_l2_00025055	NA	NA	NA	NA	XLOC_l2_013233	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013233), lincRNA [TCONS_l2_00025055]"	chr6:170483849-170483790	hs|6q27	Agilent_HUMAN_G3V2	TCONS_l2_00025055	TCONS_l2_00025055	chr6	170483790	170483849	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43703_PI429285431	3.5804853	P	3.9857304	P	0.755107996303684	0	lncRNA	48452-1_{1..688}	"gi|310118809|ref|XR_108332.1| PREDICTED: Homo sapiens uncharacterized LOC100506775, transcript variant 1 (LOC100506775), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310118809|ref|XR_108332.1| PREDICTED: Homo sapiens uncharacterized LOC100506775, transcript variant 1 (LOC100506775), misc_RNA"	NA	NA	NA	NA	NA	XR_108332.1	NA	NA	NA	NA	NA	Unknown
CUST_34139_PI429285431	0.89749926	A	0.8914534	A	1.00419946395275	0	lncRNA	35659-1_{1..2190}	n340979|AK022123|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3445|NULL|-0.5044070|-0.3745443	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340979|AK022123|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3445|NULL|-0.5044070|-0.3745443	chr11	 16470334	 16472523	-	NA	NA	NA	NA	SOX6	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60chr11:16460334-16482422"	NA	inner
CUST_6774_PI429285431	4.883796	P	5.53828	P	0.635302675500465	0	lncRNA	6721-1_{1..576}	"transcript_id ""ENST00000418813.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418813.2"" | genecode_v17"	chr21	 17791722	 17792297	+	ENSG00000215386.6	ENST00000418813.2	LINC00478	LINC00478-010	NA	NA	NA	inter
CUST_35175_PI429285431	4.814604	P	5.1336045	P	0.801625051577273	0	lncRNA	36577-1_{1..2039}	n342154|CR617503|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4641|NULL|-1.1354900|-0.4183799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342154|CR617503|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4641|NULL|-1.1354900|-0.4183799	chr6	149704968	149707006	+	NA	NA	NA	NA	TAB2	NA	chr6:149694968-149717007	inner
CUST_44150_PI429285431	5.9061413	P	5.9529757	P	0.968058139237675	0	lncRNA	48812-1_{1..3000}	"gi|387527985|ref|NR_046757.1| Homo sapiens SNRK antisense RNA 1 (SNRK-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|387527985|ref|NR_046757.1| Homo sapiens SNRK antisense RNA 1 (SNRK-AS1), non-coding RNA"	Chr3	 43388411	 43391410	-	100873954	NR_046757.1	NA	NA	NA	"hg19_refFlat_SNRK:range=chr3:43344696-433900495'pad=0,hg19_refFlat_SNRK:range=chr3:43344696-433900495'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.20"	NA	inter
LNCA_21_P0001630	0.9232826	A	0.9109769	A	1.00856614247077	0	lncRNA	TCONS_00001834	NA	NA	NA	NA	XLOC_001220	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001220), lincRNA [TCONS_00001834]"	chr1:223564608-223564549	hs|1q41	Agilent_HUMAN_G3V2	TCONS_00001834	TCONS_00001834	chr1	223564549	223564608	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31448_PI429285431	2.6408992	A	2.75604	A	0.923292197516559	0	lncRNA	33215-1_{1..1624}	n337915|CR616789|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|298|NULL|-0.9784590|-0.1334157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337915|CR616789|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|298|NULL|-0.9784590|-0.1334157	chr1	 47901677	 47903300	-	NA	NA	NA	NA	FOXD2	NA	chr1:47901689-47906363	inner
CUST_50267_PI429285431	1.9309949	A	0.8946721	A	2.0509933299122	0	lncRNA	53990-1_{1..460}	hg19_lincRNAsTranscripts_TCONS_l2_00028811 range=chr9:69080708-69086147 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028811 range=chr9:69080708-69086147 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69080708	 69081167	+	NA	NA	NA	NA	LOC100507370	NA	chr9:69070708-69089939	inter
CUST_35780_PI429285431	2.51115	A	2.8135755	A	0.810887961773824	0	lncRNA	37194-1_{1..1139}	n344464|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_12|NULL|-1.5212000|-0.1858759	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344464|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_12|NULL|-1.5212000|-0.1858759	chr12	122233119	122234257	+	NA	NA	NA	NA	SETD1B	NA	chr12:122242638-122247862	inter
CUST_47930_PI429285431	4.7397	P	2.7578862	A	3.94989362379187	0	lncRNA	51821-1_{1..2617}	"gi|410172278|ref|XR_171693.1| PREDICTED: Homo sapiens cutaneous T-cell lymphoma-associated antigen 4-like (LOC101060696), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172278|ref|XR_171693.1| PREDICTED: Homo sapiens cutaneous T-cell lymphoma-associated antigen 4-like (LOC101060696), misc_RNA"	NA	NA	NA	NA	NA	XR_171693.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013651	4.3716125	P	4.212291	P	1.11676180106949	0	lncRNA	TCONS_l2_00029347	NA	NA	NA	NA	XLOC_l2_015213	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015213), lincRNA [TCONS_l2_00029347]"	chr9:68424086-68424027	hs|9q13	Agilent_HUMAN_G3V2	TCONS_l2_00029347	TCONS_l2_00029347	chr9	 68424027	 68424086	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45729_PI429285431	7.768757	P	7.7630296	P	1.00397782177693	0	lncRNA	50085-12_{33001..36000}	"gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	Chr11	  2662558	  2665557	-	10984	NR_002728.3	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.02;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0,hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_20136_PI429285431	4.88469	P	5.1726074	P	0.819083592294235	0	lncRNA	21783-1_{1..3000}	lnc-XPC-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XPC-5:2	chr3	 14581776	 14584775	-	lnc-XPC-5	lnc-XPC-5:2	ENSG00000144596.7	GRIP2	GRIP2	NA	chr3:14571776-14583588	inner
CUST_39700_PI429285431	10.221592	P	10.546772	P	0.798198791680183	0	lncRNA	40637-1_{1..1680}	n405523|NR_002570|lncRNA|Homosapiens||RefGeneNoncode|NR_002570||8.1334300|-0.1256618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405523|NR_002570|lncRNA|Homosapiens||RefGeneNoncode|NR_002570||8.1334300|-0.1256618	chr22	 42536213	 42537892	-	NA	NA	NA	NA	CYP2D6	NA	chr22:42526213-42526883	inter
CUST_12666_PI429285431	0.90873605	A	0.90313834	A	1.00388757399219	0	lncRNA	14283-1_{1..640}	lnc-TNFAIP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFAIP2-1:1	chr14	103586354	103586993	+	lnc-TNFAIP2-1	lnc-TNFAIP2-1:1	XLOC_010942	linc-TNFAIP2	EXOC3L4	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10chr14:103576354-103576896"	NA	inter
CUST_20213_PI429285431	7.4179325	P	7.550373	P	0.912286896239996	0	lncRNA	21857-1_{1..797}	lnc-MRPL11-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPL11-1:3	chr11	 66247510	 66248306	-	lnc-MRPL11-1	lnc-MRPL11-1:3	ENSG00000255517.1	CTD-3074O7.5	PELI3	NA	chr11:66237510-66244808	inner
CUST_1563_PI429285431	5.9065833	P	5.5396457	P	1.28961247063571	0	lncRNA	1551-1_{1..522}	"transcript_id ""ENST00000457125.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457125.1"" | genecode_v17"	chr3	177055416	177055937	-	ENSG00000226782.2	ENST00000457125.1	RP11-706D8.3	RP11-706D8.3-001	NA	NA	NA	inter
CUST_19442_PI429285431	3.0630958	A	3.0154977	A	1.03354277608116	0	lncRNA	21102-1_{1..336}	lnc-SP3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SP3-2:1	chr2	174220895	174221230	-	lnc-SP3-2	lnc-SP3-2:1	ENSG00000236391.2	AC092573.3	CDCA7	NA	chr2:174219561-174230936	inner
CUST_48895_PI429285431	1.8903224	A	2.0841596	A	0.874277272104228	0	lncRNA	52734-1_{1..250}	hg19_lincRNAsTranscripts_TCONS_l2_00018703 range=chr3:97819578-97823722 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018703 range=chr3:97819578-97823722 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	 97819578	 97819827	+	NA	NA	NA	NA	OR5H1	NA	chr3:97823598-97833722	inter
CUST_9783_PI429285431	4.2906117	P	4.0080814	P	1.21632629331557	0	lncRNA	11299-3_{6001..6388}	lnc-CADM2-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CADM2-3:6	chr3	 84104594	 84104981	+	lnc-CADM2-3	lnc-CADM2-3:6	XLOC_002722	linc-CADM2-2	NA	NA	NA	inter
LNCA_21_P0002630	0.9594213	A	0.9218585	A	1.02637846080595	0	lncRNA	TCONS_00005019	NA	NA	NA	NA	XLOC_001866	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001866), lincRNA [TCONS_00005019]"	chr2:219840443-219842234	hs|2q35	Agilent_HUMAN_G3V2	TCONS_00005019	TCONS_00005019	chr2	219840443	219842234	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41149_PI429285431	0.90819806	A	0.90708697	A	1.00077044554166	0	lncRNA	41948-1_{1..115}	ENST00000408850 ncrna:miRNA chromosome:GRCh37:1:98838941:98839055:1 gene:ENSG00000221777 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408850 ncrna:miRNA chromosome:GRCh37:1:98838941:98839055:1 gene:ENSG00000221777 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 98838941	 98839055	+	ENSG00000221777	ENST00000408850	NA	NA	NA	NA	NA	inter
LNCA_21_P0007902	3.535593	P	3.5348034	P	1.00054745881468	0	lncRNA	TCONS_00021449	NA	NA	NA	NA	XLOC_010252	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010252), lincRNA [TCONS_00021449]"	chr12:128119946-128119298	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00021449	TCONS_00021449	chr12	128119298	128119946	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14269_PI429285431	0.9030776	A	1.0390121	A	0.910080141819183	0	lncRNA	15928-1_{1..3000}	lnc-ITPR3-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITPR3-1:8	chr6	 33882503	 33885502	+	lnc-ITPR3-1	lnc-ITPR3-1:8	XLOC_005263	linc-HMGA1-2	NA	NA	NA	inter
CUST_16546_PI429285431	0.9293523	A	0.924638	A	1.00327304851734	0	lncRNA	18247-1_{1..1226}	lnc-B3GAT2-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-B3GAT2-3:10	chr6	 72055877	 72057102	-	lnc-B3GAT2-3	lnc-B3GAT2-3:10	XLOC_005763	linc-B3GAT2-3	NA	NA	NA	inter
CUST_9509_PI429285431	1.1070822	A	1.0667651	A	1.02833982779724	0	lncRNA	11018-1_{1..1639}	lnc-ST6GAL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ST6GAL2-2:1	chr2	108001903	108003541	-	lnc-ST6GAL2-2	lnc-ST6GAL2-2:1	XLOC_002251	linc-ST6GAL2-1	NA	NA	NA	inter
CUST_43479_PI429285431	0.9076482	A	1.2816688	A	0.771629069489018	0	lncRNA	48277-1_{1..3000}	"gi|313851015|ref|NR_037641.1| Homo sapiens HEATR8-TTC4 readthrough (HEATR8-TTC4), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|313851015|ref|NR_037641.1| Homo sapiens HEATR8-TTC4 readthrough (HEATR8-TTC4), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_037641.1	NA	NA	NA	NA	NA	Unknown
CUST_30408_PI429285431	3.5229735	P	3.3456779	A	1.13076223013361	0	lncRNA	32188-1_{1..284}	n335537|BC070230|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264188_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264188_06|-0.9623200|-0.1519176	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335537|BC070230|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264188_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264188_06|-0.9623200|-0.1519176	chr6	  4521175	  4521458	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.20"	NA	inter
CUST_35355_PI429285431	0.8937595	A	0.90341353	A	0.993330675648976	0	lncRNA	36765-2_{3001..3210}	n342398|BC018945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4890|NULL|-1.0457800|-0.2375809	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342398|BC018945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4890|NULL|-1.0457800|-0.2375809	chr2	 23727794	 23728003	-	NA	NA	NA	NA	KLHL29	NA	chr2:23714794-23737929	inner
CUST_41983_PI429285431	2.0416481	A	1.8338181	A	1.15494968301518	0	lncRNA	43808-1_{1..63}	ENST00000585139 ncrna:miRNA chromosome:GRCh37:1:6489894:6489956:-1 gene:ENSG00000265392 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585139 ncrna:miRNA chromosome:GRCh37:1:6489894:6489956:-1 gene:ENSG00000265392 gene_biotype:miRNA transcript_biotype:miRNA	chr1	  6489894	  6489956	-	ENSG00000265392	ENST00000585139	NA	NA	ESPN	NA	chr1:6484848-6499956	inner
CUST_38921_PI429285431	0.90216744	A	0.9112903	A	0.993696466465899	0	lncRNA	39910-1_{1..2007}	n385016|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qeu.1||-0.8859950|-0.3263250	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n385016|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qeu.1||-0.8859950|-0.3263250	chr6	134786114	134788120	+	NA	NA	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70"	NA	inter
LNCA_21_P0002158	3.3710046	P	4.1815243	P	0.57017642708517	0	lncRNA	TCONS_00003544	NA	NA	NA	NA	XLOC_001317	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001317), lincRNA [TCONS_00003544]"	chr2:1757609-1757668	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00003544	TCONS_00003544	chr2	  1757609	  1757668	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2394_PI429285431	9.74664	P	10.649091	P	0.534977084216598	0	lncRNA	2386-2_{3001..3591}	"transcript_id ""ENST00000524295.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524295.1"" | genecode_v17"	chr5	151332132	151332722	+	ENSG00000254226.1	ENST00000524295.1	CTB-12O2.1	CTB-12O2.1-001	NA	NA	NA	inter
CUST_20614_PI429285431	0.91925573	A	0.92258555	A	0.997694606166933	0	lncRNA	22253-1_{1..512}	lnc-TRPV1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TRPV1-1:1	chr17	  3505055	  3505566	-	lnc-TRPV1-1	lnc-TRPV1-1:1	ENSG00000261916.1	RP11-235E17.4	SHPK	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20chr17:3511556-3515566"	NA	inner
CUST_34746_PI429285431	0.92655236	A	0.96609646	A	0.972962360586309	0	lncRNA	36189-1_{1..1108}	n341651|BC017428|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4122|NULL|-1.1198200|-0.4251996	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341651|BC017428|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4122|NULL|-1.1198200|-0.4251996	chr9	  4258128	  4259235	-	NA	NA	NA	NA	GLIS3	NA	chr9:4248128-4269207	inner
LNCA_21_P0004900	0.92439556	A	0.92449236	A	0.999932905603852	0	lncRNA	TCONS_00011863	NA	NA	NA	NA	XLOC_005355	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005355), lincRNA [TCONS_00011863]"	chr6:77484964-77599940	hs|6q14.1	Agilent_HUMAN_G3V2	TCONS_00011863	TCONS_00011863	chr6	 77484964	 77599940	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21014_PI429285431	2.2875993	A	2.387777	A	0.932918074837617	0	lncRNA	22643-1_{1..157}	lnc-KLHDC7B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHDC7B-1:1	chr22	 50985997	 50986153	+	lnc-KLHDC7B-1	lnc-KLHDC7B-1:1	ENSG00000226738.1	CTA-384D8.31	KLHDC7B	NA	chr22:50986462-50989452	inter
CUST_35376_PI429285431	3.469465	P	2.9658887	P	1.41772360830456	0	lncRNA	36784-1_{1..1390}	n342423|AL832916|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4916|NULL|-1.1335100|-0.2768821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342423|AL832916|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4916|NULL|-1.1335100|-0.2768821	chr2	 75155396	 75156785	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006741	6.0990396	P	6.309464	P	0.864282946355982	0	lncRNA	ENST00000446012	NA	NA	NA	NA	XLOC_008762	NA	ENST00000446012	THC2629681	NA	"BROAD Institute lincRNA (XLOC_008762), lincRNA [TCONS_00017943]"	chr10:29084998-29084939	hs|10p12.1	Agilent_HUMAN_G3V2	ENST00000446012	ENST00000446012	chr10	 29084939	 29084998	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33488_PI429285431	0.91964585	A	0.92572904	A	0.995792331151412	0	lncRNA	35060-1_{1..1487}	n340227|U79300|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2688|NULL|-1.3064200|-0.4462164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340227|U79300|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2688|NULL|-1.3064200|-0.4462164	chr4	138523178	138524664	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34316_PI429285431	1.082624	A	0.95589894	A	1.09181245497581	0	lncRNA	35810-1_{1..1999}	n341177|AK057263|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3643|NULL|1.4893200|-0.0900276	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341177|AK057263|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3643|NULL|1.4893200|-0.0900276	chr7	  5414323	  5416321	+	NA	NA	NA	NA	TNRC18	"hg19_refFlat_TNRC18:range=chr7:5347737-54608775'pad=0,hg19_refFlat_TNRC18:range=chr7:5347737-54608775'pad=0 3'pad=0 strand=- repeatMasking=none,-108.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-61.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20chr7:5404323-5426320"	NA	inner
LNCA_21_P0001164	0.9280431	A	0.9236206	A	1.00307014668231	0	lncRNA	ENST00000415166	NA	NA	NA	NA	XLOC_000955	NA	ENST00000415166	NA	NA	"BROAD Institute lincRNA (XLOC_000955), lincRNA [TCONS_00000600]"	chr1:110426888-110426829	hs|1p13.3	Agilent_HUMAN_G3V2	ENST00000415166	ENST00000415166	chr1	110426829	110426888	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011263	6.4454	P	6.885655	P	0.737004329751655	0	lncRNA	TCONS_l2_00008016	NA	NA	NA	NA	XLOC_l2_004371	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004371), lincRNA [TCONS_l2_00008016]"	chr14:35438410-35433234	hs|14q13.2	Agilent_HUMAN_G3V2	TCONS_l2_00008016	TCONS_l2_00008016	chr14	 35433234	 35438410	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25769_PI429285431	6.3502164	P	6.778715	P	0.743034652693824	0	lncRNA	27294-1_{1..575}	lnc-MICB-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MICB-3:2	chr6	 31444804	 31445378	+	lnc-MICB-3	lnc-MICB-3:2	ENSG00000206337.6	HCP5	NA	NA	NA	inter
CUST_1340_PI429285431	2.5896266	A	1.122581	A	2.76455179227862	0	lncRNA	1329-1_{1..2419}	"transcript_id ""ENST00000603217.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603217.1"" | genecode_v17"	chr3	 38532215	 38534633	+	ENSG00000270674.1	ENST00000603217.1	RP11-216F19.2	RP11-216F19.2-001	EXOG	NA	chr3:38537763-38544633	inner
CUST_20501_PI429285431	5.543981	P	5.887319	P	0.788215486344851	0	lncRNA	22143-1_{1..561}	lnc-RBFA-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBFA-1:6	chr18	 77853168	 77853728	+	lnc-RBFA-1	lnc-RBFA-1:6	ENSG00000261126.1	RP11-795F19.1	NA	NA	NA	inter
CUST_11362_PI429285431	4.5002837	P	4.0233603	P	1.39177249360572	0	lncRNA	12926-1_{1..436}	lnc-CCDC125-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC125-1:1	chr5	 68484818	 68485253	-	lnc-CCDC125-1	lnc-CCDC125-1:1	XLOC_004864	linc-CD180-13	CENPH	NA	chr5:68485375-68494948	inter
CUST_42826_PI429285431	1.3573052	A	1.5482123	A	0.876054725369645	0	lncRNA	45840-1_{1..71}	ENST00000363883 ncrna:snoRNA chromosome:GRCh37:7:20416954:20417024:1 gene:ENSG00000200753 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363883 ncrna:snoRNA chromosome:GRCh37:7:20416954:20417024:1 gene:ENSG00000200753 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 20416954	 20417024	+	ENSG00000200753	ENST00000363883	NA	NA	ITGB8	NA	chr7:20406954-20427024	inner
CUST_7826_PI429285431	2.272047	A	3.080291	A	0.571076530275014	0	lncRNA	9450-1_{1..2455}	lnc-EVX1-10:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-EVX1-10:3	chr7	 27161538	 27163992	+	lnc-EVX1-10	lnc-EVX1-10:3	ENSG00000253552	AC004080.12	HOXA3	NA	chr7:27151538-27166639	inner
LNCA_21_P0012421	1.5843213	A	2.1811814	A	0.661191416047575	0	lncRNA	TCONS_l2_00019076	NA	NA	NA	NA	XLOC_l2_010056	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010056), lincRNA [TCONS_l2_00019076]"	chr3:194430146-194430205	hs|3q29	Agilent_HUMAN_G3V2	TCONS_l2_00019076	TCONS_l2_00019076	chr3	194430146	194430205	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22129_PI429285431	3.9983225	P	4.6764927	P	0.624957418435593	0	lncRNA	23732-1_{1..3000}	lnc-ACSL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACSL1-3:1	chr4	185905431	185908430	-	lnc-ACSL1-3	lnc-ACSL1-3:1	ENSG00000265405.1	RP11-517M22.1	NA	NA	NA	inter
LNCA_21_P0010669	5.9835978	P	5.9901743	P	0.995451891678706	0	lncRNA	TCONS_l2_00001761	NA	NA	NA	NA	XLOC_l2_001302	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001302), lincRNA [TCONS_l2_00001761]"	chr1:212826582-212826523	hs|1q32.3	Agilent_HUMAN_G3V2	TCONS_l2_00001761	TCONS_l2_00001761	chr1	212826523	212826582	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35801_PI429285431	4.1041794	P	4.298635	P	0.873902600262335	0	lncRNA	37208-4_{9001..11929}	n344478|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_26|NULL|-1.2862300|-0.2792485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344478|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_26|NULL|-1.2862300|-0.2792485	chr14	101301452	101304380	+	NA	NA	NA	NA	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10"	NA	inter
CUST_29784_PI429285431	0.9184799	A	0.9138633	A	1.00320510868587	0	lncRNA	31547-1_{1..866}	n333485|BC029878|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091926|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091926|0.2531540|-0.0469859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333485|BC029878|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091926|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091926|0.2531540|-0.0469859	chr16	  9185181	  9186046	+	NA	NA	NA	NA	C16orf72	NA	chr16:9185537-9196047	inner
CUST_7588_PI429285431	2.8318982	A	0.92839456	A	3.74120660574291	0	lncRNA	9223-1_{1..2005}	lnc-RNF113B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF113B-2:1	chr13	 98676013	 98678017	-	lnc-RNF113B-2	lnc-RNF113B-2:1	ENSG00000247365	ENST00000502000	IPO5	NA	chr13:98666013-98676550	inner
CUST_39684_PI429285431	1.9754503	A	2.4196298	A	0.735002213589437	0	lncRNA	40624-1_{1..2020}	n405395|NR_002139_7|lncRNA|Homosapiens||RefGeneNoncode|NR_002139_7||-1.1514800|-0.2867390	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405395|NR_002139_7|lncRNA|Homosapiens||RefGeneNoncode|NR_002139_7||-1.1514800|-0.2867390	chr6	  1274919	  1276938	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3131_PI429285431	8.754441	P	9.153694	P	0.758250789439771	0	lncRNA	3110-1_{1..575}	"transcript_id ""ENST00000532768.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532768.1"" | genecode_v17"	chr8	 61544068	 61544642	-	ENSG00000228862.3	ENST00000532768.1	RP11-91I20.3	RP11-91I20.3-002	RAB2A	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10chr8:61534068-61536203"	NA	inter
CUST_38174_PI429285431	0.8992807	A	0.8980087	A	1.00088207201057	0	lncRNA	39244-1_{1..3000}	n381431|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jab.3||3.7206200|-0.2943468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381431|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jab.3||3.7206200|-0.2943468	chr10	 43008962	 43011961	-	NA	NA	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40"	NA	inter
CUST_15478_PI429285431	0.92079455	A	0.9183451	A	1.00169927148974	0	lncRNA	17166-1_{1..261}	lnc-NDFIP2-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDFIP2-9:1	chr13	 81592758	 81593018	+	lnc-NDFIP2-9	lnc-NDFIP2-9:1	XLOC_010454	linc-SLITRK5-9	NA	NA	NA	inter
CUST_27433_PI429285431	4.799372	P	4.456503	P	1.26827623172287	0	lncRNA	28998-1_{1..898}	n324603|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039763|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039763|-1.0123600|-0.2432315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324603|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039763|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039763|-1.0123600|-0.2432315	chr6	  6637975	  6638872	+	NA	NA	NA	NA	LY86	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-26.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80chr6:6627975-6655216"	NA	inner
LNCA_33_P3360236	0.9226366	A	0.91113335	A	1.00800531787487	0	lncRNA	XR_108863	XR_108863	XR_108863	100506351	Hs.666202	LOC100506351	uncharacterized LOC100506351	NA	THC2601649	NA	"PREDICTED: Homo sapiens hypothetical LOC100506351 (LOC100506351), miscRNA [XR_108863]"	chr8:91661053-91661112	hs|8q21.3	Agilent_HUMAN_G3V2	XR_108863	XR_108863	chr8	 91661053	 91661112	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49604_PI429285431	0.9020532	A	0.89557344	A	1.00450152895248	0	lncRNA	53394-1_{1..367}	hg19_lincRNAsTranscripts_TCONS_l2_00024511 range=chr6:161347559-161349082 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024511 range=chr6:161347559-161349082 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	161347559	161347925	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9038_PI429285431	2.9969194	A	2.6865833	A	1.2399965442786	0	lncRNA	10564-1_{1..2168}	lnc-SBF2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SBF2-2:3	chr11	  9779314	  9781481	-	lnc-SBF2-2	lnc-SBF2-2:3	ENSG00000245522	RP11-540A21.2	SWAP70	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10chr11:9769314-9774508"	NA	inter
CUST_44068_PI429285431	0.9239518	A	0.91130555	A	1.00880424389291	0	lncRNA	48740-1_{1..3000}	"gi|299829179|ref|NR_033879.1| Homo sapiens uncharacterized LOC348761 (LOC348761), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299829179|ref|NR_033879.1| Homo sapiens uncharacterized LOC348761 (LOC348761), non-coding RNA"	Chr2	231849083	231852082	-	348761	NR_033879.1	NA	NA	NA	NA	NA	inter
CUST_2749_PI429285431	4.1732564	P	4.167879	P	1.00373428478057	0	lncRNA	2733-1_{1..636}	"transcript_id ""ENST00000415399.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415399.1"" | genecode_v17"	chr7	  1778619	  1779254	-	ENSG00000236081.1	ENST00000415399.1	AC074389.9	AC074389.9-002	ELFN1	NA	chr7:1768619-1787590	inner
CUST_13685_PI429285431	3.0452194	P	2.8072538	P	1.1793284717077	0	lncRNA	15325-1_{1..572}	lnc-TUBGCP3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TUBGCP3-5:1	chr13	112849707	112850278	-	lnc-TUBGCP3-5	lnc-TUBGCP3-5:1	XLOC_010731	linc-ANKRD10-7	NA	NA	NA	inter
CUST_21731_PI429285431	4.9191732	P	4.918306	P	1.00060127793013	0	lncRNA	23341-1_{1..376}	lnc-TFDP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TFDP2-1:1	chr3	141637578	141637953	-	lnc-TFDP2-1	lnc-TFDP2-1:1	ENSG00000244124.1	ATP1B3-AS1	ATP1B3	NA	chr3:141627578-141645382	inner
CUST_17074_PI429285431	2.9827514	A	3.0466778	A	0.956656961306957	0	lncRNA	18783-1_{1..496}	lnc-PPME1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPME1-1:2	chr11	 74035386	 74035881	+	lnc-PPME1-1	lnc-PPME1-1:2	XLOC_009215	linc-POLD3-1	PGM2L1	NA	chr11:74041361-74045785	inter
CUST_30162_PI429285431	0.91318697	A	0.9153584	A	0.998496011543634	0	lncRNA	31936-1_{1..334}	n334838|AJ303364|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246888|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246888|1.6105800|-0.3331473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334838|AJ303364|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246888|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246888|1.6105800|-0.3331473	chr11	 85416008	 85416341	-	NA	NA	NA	NA	SYTL2	NA	chr11:85406008-85430543	inner
CUST_49135_PI429285431	6.023493	P	6.4967227	P	0.72035017408155	0	lncRNA	52961-1_{1..787}	hg19_lincRNAsTranscripts_TCONS_l2_00021217 range=chr4:93103767-93104992 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021217 range=chr4:93103767-93104992 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 93103767	 93104553	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46591_PI429285431	1.0833366	A	0.89676183	A	1.13805854032236	0	lncRNA	50773-2_{3001..3451}	"gi|371872695|ref|NR_045815.1| Homo sapiens activating transcription factor 7 interacting protein 2 (ATF7IP2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371872695|ref|NR_045815.1| Homo sapiens activating transcription factor 7 interacting protein 2 (ATF7IP2), transcript variant 3, non-coding RNA"	Chr16	 10525725	 10526175	+	80063	NR_045815.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60"	NA	inter
CUST_13817_PI429285431	0.89054215	A	1.1213783	A	0.852140869063186	0	lncRNA	15460-1_{1..857}	lnc-VPS18-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VPS18-1:5	chr15	 41201027	 41201883	+	lnc-VPS18-1	lnc-VPS18-1:5	XLOC_011223	linc-DLL4	VPS18	NA	chr15:41191027-41196173	inter
CUST_23383_PI429285431	1.2077395	A	0.99504983	A	1.15884665211997	0	lncRNA	24951-1_{1..769}	lnc-IL16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL16-1:1	chr15	 81654260	 81655028	+	lnc-IL16-1	lnc-IL16-1:1	ENSG00000259343.1	RP11-761I4.3	TMC3	"hg19_refFlat_TMC3:range=chr15:81624760-816664185'pad=0,hg19_refFlat_TMC3:range=chr15:81624760-816664185'pad=0 3'pad=0 strand=- repeatMasking=none,-100.80chr15:81644260-81664331"	NA	inner
CUST_16536_PI429285431	0.8927983	A	0.88850474	A	1.00298050189837	0	lncRNA	18236-1_{1..720}	lnc-RAP1GDS1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAP1GDS1-3:3	chr4	 99599126	 99599845	+	lnc-RAP1GDS1-3	lnc-RAP1GDS1-3:3	XLOC_003615	linc-METAP1-2	NA	NA	NA	inter
CUST_12808_PI429285431	0.9071687	A	0.89974517	A	1.00515886021934	0	lncRNA	14436-1_{1..503}	lnc-C1orf192-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf192-1:1	chr1	161390013	161390515	-	lnc-C1orf192-1	lnc-C1orf192-1:1	XLOC_001066	linc-C1orf192	NA	NA	NA	inter
CUST_14095_PI429285431	1.1947454	A	1.4513543	A	0.837053128546143	0	lncRNA	15741-1_{1..293}	lnc-C9orf89-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf89-1:2	chr9	 95910126	 95910418	+	lnc-C9orf89-1	lnc-C9orf89-1:2	XLOC_007464	linc-WNK2	NA	NA	NA	inter
CUST_33817_PI429285431	0.9206066	A	1.8054476	A	0.541547203609031	0	lncRNA	35365-1_{1..1452}	n340602|BC029465|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3064|NULL|1.0885000|-0.2320093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340602|BC029465|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3064|NULL|1.0885000|-0.2320093	chr5	121772191	121773642	-	NA	NA	NA	NA	SNCAIP	"hg19_refFlat_SNCAIP:range=chr5:121726876-1217992705'pad=0,hg19_refFlat_SNCAIP:range=chr5:121726876-1217992705'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_SNCAIP:range=chr5:121726830-1217991915'pad=0,hg19_refFlat_SNCAIP:range=chr5:121726830-1217991915'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50chr5:121762191-121799794"	NA	inner
CUST_48769_PI429285431	2.7036602	A	2.8618796	A	0.896130408837933	0	lncRNA	52606-1_{1..294}	hg19_lincRNAsTranscripts_TCONS_l2_00015026 range=chr2:186923483-186946136 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015026 range=chr2:186923483-186946136 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	186923483	186923776	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13713_PI429285431	1.6948192	A	2.165969	A	0.721389435189738	0	lncRNA	15352-1_{1..427}	lnc-C22orf26-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C22orf26-4:1	chr22	 46410017	 46410443	-	lnc-C22orf26-4	lnc-C22orf26-4:1	XLOC_014403	linc-WNT7B-1	NA	NA	NA	inter
CUST_7265_PI429285431	2.5631018	A	1.8034903	A	1.69303464996117	0	lncRNA	8056-1_{1..306}	"transcript_id ""ENST00000364713.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000364713.1"" | genecode_v17"	chr9	107859037	107859342	+	ENSG00000201583.1	ENST00000364713.1	RN7SKP191	RN7SKP191-201	NA	NA	NA	inter
CUST_34788_PI429285431	0.9086404	A	0.9036977	A	1.00343189407892	0	lncRNA	36225-1_{1..596}	n341695|AF085948|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4166|NULL|-1.0773700|-0.2744897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341695|AF085948|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4166|NULL|-1.0773700|-0.2744897	chr9	 71855142	 71855737	-	NA	NA	NA	NA	TJP2	NA	chr9:71845142-71865736	inner
LNCA_33_P3279660	0.9129655	A	0.89992833	A	1.00907763166912	0	lncRNA	XR_132877	XR_132877	XR_132877	   644339	Hs.653095	LOC644339	ankyrin repeat domain-containing protein 20B-like	NA	NA	NA	"PREDICTED: Homo sapiens ankyrin repeat domain-containing protein 20B-like (LOC644339), miscRNA [XR_132877]"	chrUn_gl000211:103518-103576	NA	Agilent_HUMAN_G3V2	XR_132877	XR_132877	chrUn_gl000211	   103518	   103576	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21807_PI429285431	1.0095825	A	1.6237904	A	0.653288477831731	0	lncRNA	23417-1_{1..636}	lnc-YSK4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YSK4-1:2	chr2	135676133	135676768	-	lnc-YSK4-1	lnc-YSK4-1:2	ENSG00000224043.3	AC016725.4	CCNT2	"hg19_refFlat_ACMSD:range=chr2:135596253-1356594305'pad=0,hg19_refFlat_ACMSD:range=chr2:135596253-1356594305'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40chr2:135676392-135686248"	NA	inter
CUST_44648_PI429285431	5.9401298	P	6.098118	P	0.896274030287267	0	lncRNA	49212-1_{1..1030}	"gi|397139120|ref|XR_110081.2| PREDICTED: Homo sapiens uncharacterized LOC100507602, transcript variant 1 (LOC100507602), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139120|ref|XR_110081.2| PREDICTED: Homo sapiens uncharacterized LOC100507602, transcript variant 1 (LOC100507602), misc_RNA"	NA	NA	NA	NA	NA	XR_110081.2	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-62.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70"	NA	Unknown
CUST_26909_PI429285431	0.97421044	A	0.89652956	A	1.05532025800815	0	lncRNA	28427-1_{1..509}	n323985|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053796|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053796|-1.2765500|-0.5751751	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323985|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053796|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053796|-1.2765500|-0.5751751	chr9	117814460	117814968	+	NA	NA	NA	NA	TNC	NA	chr9:117804460-117825065	inner
CUST_14952_PI429285431	0.90964425	A	0.90874237	A	1.00062533101717	0	lncRNA	16616-1_{1..605}	lnc-DIAPH3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DIAPH3-4:1	chr13	 59396872	 59397476	-	lnc-DIAPH3-4	lnc-DIAPH3-4:1	XLOC_010631	linc-PCDH8-3	NA	NA	NA	inter
CUST_19868_PI429285431	0.9097539	A	0.91501385	A	0.996360718782146	0	lncRNA	21524-1_{1..422}	lnc-AC069257.9.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC069257.9.1-1:1	chr3	195978245	195978666	+	lnc-AC069257.9.1-1	lnc-AC069257.9.1-1:1	ENSG00000228028.1	AC069257.8	PCYT1A	NA	chr3:195968245-195988525	inner
CUST_38875_PI429285431	6.0380206	P	4.53937	P	2.82578284090409	0	lncRNA	39862-2_{3001..4475}	n384770|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003lzy.3||1.2024400|-0.3897122	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384770|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003lzy.3||1.2024400|-0.3897122	chr5	167978499	167979973	-	NA	NA	NA	NA	PANK3	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20chr5:167982628-167989974"	NA	inter
CUST_20398_PI429285431	11.305176	P	10.952448	P	1.27697298107818	0	lncRNA	22039-1_{1..391}	lnc-TGIF1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TGIF1-2:3	chr18	  3597174	  3597564	+	lnc-TGIF1-2	lnc-TGIF1-2:3	ENSG00000177337.3	RP11-874J12.2	DLGAP1	NA	chr18:3587174-3607370	inner
CUST_46713_PI429285431	8.296183	P	8.032303	P	1.20070355161777	0	lncRNA	50871-1_{1..570}	"gi|260064042|ref|NR_028514.1| Homo sapiens PITPNA antisense RNA 1 (PITPNA-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|260064042|ref|NR_028514.1| Homo sapiens PITPNA antisense RNA 1 (PITPNA-AS1), non-coding RNA"	Chr17	  1420213	  1420782	+	100306951	NR_028514.1	NA	NA	NA	NA	NA	inter
CUST_10394_PI429285431	5.46459	P	5.9422226	P	0.718155119042282	0	lncRNA	11921-2_{3001..3643}	lnc-RP11-150O12.1.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-150O12.1.1-1:4	chr8	 37189226	 37189868	-	lnc-RP11-150O12.1.1-1	lnc-RP11-150O12.1.1-1:4	XLOC_007052	linc-DUSP26-4	NA	NA	NA	inter
LNCA_21_P0014894	4.8184147	P	3.5046537	P	2.48588748616407	0	lncRNA	XR_132878	XR_132878	XR_132878	NA	NA	LOC100652757	uncharacterized LOC100652757	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652757 (LOC100652757), miscRNA [XR_132878]"	NA	NA	Agilent_HUMAN_G3V2	XR_132878	XR_132878	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4855_PI429285431	1.0862896	A	1.2001579	A	0.924106927992569	0	lncRNA	4798-1_{1..664}	"transcript_id ""ENST00000554436.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554436.1"" | genecode_v17"	chr14	 62331598	 62332261	+	ENSG00000258882.1	ENST00000554436.1	CTD-2277K2.1	CTD-2277K2.1-002	NA	NA	NA	inter
CUST_12645_PI429285431	0.9103819	A	0.91091627	A	0.999629671529646	0	lncRNA	14262-1_{1..1031}	lnc-KRTAP10-12-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KRTAP10-12-1:2	chr21	 46223662	 46224692	+	lnc-KRTAP10-12-1	lnc-KRTAP10-12-1:2	XLOC_013973	linc-C21orf70-5	SUMO3	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40chr21:46225532-46234632"	NA	inter
CUST_28334_PI429285431	1.522394	A	1.5043498	A	1.01258582957404	0	lncRNA	29979-1_{1..485}	n325639|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045722|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045722|-1.3016800|-0.4700834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325639|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045722|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045722|-1.3016800|-0.4700834	chr13	105180235	105180719	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001964	4.376719	P	4.7133	P	0.791915827535403	0	lncRNA	ENST00000414756	NA	NA	NA	NA	XLOC_001847	NA	ENST00000414756	NA	NA	"BROAD Institute lincRNA (XLOC_001847), lincRNA [TCONS_00003099]"	chr2:216341401-216344651	hs|2q35	Agilent_HUMAN_G3V2	ENST00000414756	ENST00000414756	chr2	216341401	216344651	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18035_PI429285431	7.7172112	P	7.668732	P	1.03417418649967	0	lncRNA	19770-1_{1..900}	lnc-BLID-1:19	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BLID-1:19	chr11	121934888	121935787	-	lnc-BLID-1	lnc-BLID-1:19	XLOC_009582	linc-TRIM29-3	NA	NA	NA	inter
CUST_34285_PI429285431	0.91047	A	0.902406	A	1.00560518948272	0	lncRNA	35783-1_{1..2412}	n341144|AK055118|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3610|NULL|-1.0851900|-0.2166563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341144|AK055118|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3610|NULL|-1.0851900|-0.2166563	chr11	125287354	125289765	+	NA	NA	NA	NA	PKNOX2	NA	chr11:125277354-125300076	inner
CUST_44359_PI429285431	5.52049	P	5.7351665	P	0.861739368550426	0	lncRNA	48979-1_{1..814}	"gi|397139061|ref|XR_158782.1| PREDICTED: Homo sapiens uncharacterized LOC100996623 (LOC100996623), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139061|ref|XR_158782.1| PREDICTED: Homo sapiens uncharacterized LOC100996623 (LOC100996623), misc_RNA"	NA	NA	NA	NA	NA	XR_158782.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60"	NA	Unknown
LNCA_21_P0012656	0.920569	A	0.90819347	A	1.00861496074228	0	lncRNA	TCONS_l2_00021054	NA	NA	NA	NA	XLOC_l2_011043	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011043), lincRNA [TCONS_l2_00021054]"	chr4:9150491-9150432	hs|4p16.1	Agilent_HUMAN_G3V2	TCONS_l2_00021054	TCONS_l2_00021054	chr4	  9150432	  9150491	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45436_PI429285431	8.748055	P	9.984461	P	0.424428664653232	0	lncRNA	49853-2_{3001..3352}	"gi|394953819|ref|NR_049766.2| Homo sapiens solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 (SLC25A25), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|394953819|ref|NR_049766.2| Homo sapiens solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 (SLC25A25), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_049766.2	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007003	1.1471331	A	0.90913033	A	1.17935885664891	0	lncRNA	TCONS_00018533	NA	NA	NA	NA	XLOC_008848	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008848), lincRNA [TCONS_00018533]"	chr10:73156225-73155810	hs|10q22.1	Agilent_HUMAN_G3V2	TCONS_00018533	TCONS_00018533	chr10	 73155810	 73156225	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42549_PI429285431	4.430561	P	5.1771774	P	0.595999737341053	0	lncRNA	45359-1_{1..131}	ENST00000363524 ncrna:snoRNA chromosome:GRCh37:17:65736785:65736915:1 gene:ENSG00000200394 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363524 ncrna:snoRNA chromosome:GRCh37:17:65736785:65736915:1 gene:ENSG00000200394 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 65736785	 65736915	+	ENSG00000200394	ENST00000363524	NA	NA	NOL11	NA	chr17:65726785-65740266	inner
CUST_38536_PI429285431	5.3807106	P	5.08087	P	1.23100839459318	0	lncRNA	39546-1_{1..2372}	n383229|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jok.2||-0.3220740|-0.2256142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383229|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jok.2||-0.3220740|-0.2256142	chr17	 73561173	 73563544	+	NA	NA	NA	NA	LLGL2	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-56.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-33.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20chr17:73551173-73571290"	NA	inner
CUST_24796_PI429285431	0.89661515	A	0.8969816	A	0.999746028471914	0	lncRNA	26339-1_{1..714}	lnc-PRM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRM1-1:1	chr16	 11438970	 11439683	-	lnc-PRM1-1	lnc-PRM1-1:1	ENSG00000263080.1	RP11-485G7.5	RMI2	NA	chr16:11439311-11445617	inter
CUST_1097_PI429285431	0.9174118	A	0.91838264	A	0.999327291361208	0	lncRNA	1086-1_{1..765}	"transcript_id ""ENST00000598248.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598248.1"" | genecode_v17"	chr2	145425552	145426316	+	ENSG00000226674.3	ENST00000598248.1	AC074093.1	AC074093.1-025	NA	NA	NA	inter
CUST_37644_PI429285431	3.8117948	P	4.025941	P	0.862056181440177	0	lncRNA	38737-2_{3001..3565}	n346122|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1672|NULL|-1.6589000|-0.3588181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346122|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1672|NULL|-1.6589000|-0.3588181	chr9	  1920164	  1920728	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70"	NA	inter
CUST_41280_PI429285431	0.9081735	A	0.91349596	A	0.996317548772215	0	lncRNA	42262-1_{1..85}	ENST00000517237 ncrna:miRNA chromosome:GRCh37:2:162775292:162775376:1 gene:ENSG00000253046 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517237 ncrna:miRNA chromosome:GRCh37:2:162775292:162775376:1 gene:ENSG00000253046 gene_biotype:miRNA transcript_biotype:miRNA	chr2	162775292	162775376	+	ENSG00000253046	ENST00000517237	NA	NA	SLC4A10	NA	chr2:162765292-162785376	inner
LNCA_19_P00811440	7.2089005	P	7.0526776	P	1.11436580983032	0	lncRNA	TCONS_00004564	NA	NA	NA	NA	XLOC_002473	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002473), lincRNA [TCONS_00004564]"	chr2:208103182-208103123	hs|2q33.3	Agilent_HUMAN_G3V2	TCONS_00004564	TCONS_00004564	chr2	208103123	208103182	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40210_PI429285431	0.9244946	A	0.9305888	A	0.995784731740989	0	lncRNA	41038-1_{1..3000}	n408039|NR_027822_3|lncRNA|Homosapiens||RefGeneNoncode|NR_027822_3||-1.0880100|-0.3191368	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408039|NR_027822_3|lncRNA|Homosapiens||RefGeneNoncode|NR_027822_3||-1.0880100|-0.3191368	chr6	  1557339	  1560338	+	NA	NA	NA	NA	NA	"hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-23.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70"	NA	inter
LNCA_21_P0005029	3.6348512	P	3.6173925	P	1.01217496747332	0	lncRNA	TCONS_00012183	NA	NA	NA	NA	XLOC_005737	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005737), lincRNA [TCONS_00012183]"	chr6:45535248-45535189	hs|6p21.1	Agilent_HUMAN_G3V2	TCONS_00012183	TCONS_00012183	chr6	 45535189	 45535248	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17316_PI429285431	1.9231058	A	1.533537	A	1.31000180536603	0	lncRNA	19034-1_{1..1418}	lnc-DAOA-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DAOA-5:2	chr13	107283135	107284552	+	lnc-DAOA-5	lnc-DAOA-5:2	XLOC_010490	linc-ABHD13-1	NA	NA	NA	inter
LNCA_21_P0010613	5.424647	P	4.865219	P	1.47368481461543	0	lncRNA	TCONS_l2_00001224	NA	NA	NA	NA	XLOC_l2_000902	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000902), lincRNA [TCONS_l2_00001224]"	chr1:48625213-48625154	hs|1p33	Agilent_HUMAN_G3V2	TCONS_l2_00001224	TCONS_l2_00001224	chr1	 48625154	 48625213	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004716	3.0562463	P	3.3338919	P	0.824936170414729	0	lncRNA	ENST00000434292	NA	NA	NA	NA	XLOC_005571	NA	ENST00000434292	NA	NA	"BROAD Institute lincRNA (XLOC_005571), lincRNA [TCONS_00011429]"	chr6:958625-958566	hs|6p25.3	Agilent_HUMAN_G3V2	ENST00000434292	ENST00000434292	chr6	   958566	   958625	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43289_PI429285431	0.9916236	A	1.5539994	A	0.677186069149232	0	lncRNA	48107-1_{1..511}	ENST00000604135 havana:sense_intronic chromosome:GRCh37:15:25287065:25287575:1 gene:ENSG00000270246 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000604135 havana:sense_intronic chromosome:GRCh37:15:25287065:25287575:1 gene:ENSG00000270246 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr15	 25287065	 25287575	+	ENSG00000270246	ENST00000604135	NA	NA	SNRPN	NA	chr15:25277065-25297575	inter
CUST_22845_PI429285431	10.118681	P	10.841967	P	0.605716241067924	0	lncRNA	24424-1_{1..407}	lnc-RAD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAD1-2:1	chr5	 34657208	 34657614	-	lnc-RAD1-2	lnc-RAD1-2:1	ENSG00000250234.1	CTD-2024P10.1	RAI14	NA	chr5:34656433-34667355	inner
CUST_40676_PI429285431	4.804315	P	4.9638486	P	0.895314464849954	0	lncRNA	41411-1_{1..598}	n410233|NR_037171_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037171_2||-1.0970800|-0.2881586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410233|NR_037171_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037171_2||-1.0970800|-0.2881586	chr6	  3381592	  3382189	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3371592-3393155	inner
CUST_41586_PI429285431	5.4316444	P	5.9887924	P	0.679644395524723	0	lncRNA	42914-1_{1..120}	ENST00000408150 ncrna:miRNA chromosome:GRCh37:14:101369934:101370053:1 gene:ENSG00000221077 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408150 ncrna:miRNA chromosome:GRCh37:14:101369934:101370053:1 gene:ENSG00000221077 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101369934	101370053	+	ENSG00000221077	ENST00000408150	NA	NA	NA	NA	NA	inter
CUST_31954_PI429285431	0.9455217	A	0.91965014	A	1.01809455698691	0	lncRNA	33678-1_{1..1913}	n338511|AL080073|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|908|NULL|-1.2905600|-0.4342792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338511|AL080073|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|908|NULL|-1.2905600|-0.4342792	chr1	211477891	211479803	+	NA	NA	NA	NA	RCOR3	NA	chr1:211467891-211489727	inner
CUST_23582_PI429285431	1.4940838	A	0.90640646	A	1.50282533228538	0	lncRNA	25149-1_{1..805}	lnc-RP11-422N16.3.1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-422N16.3.1-4:2	chr8	112527241	112528045	+	lnc-RP11-422N16.3.1-4	lnc-RP11-422N16.3.1-4:2	ENSG00000253434.1	RP11-1101K5.1	NA	NA	NA	inter
CUST_28412_PI429285431	0.923375	A	0.913431	A	1.00691646458487	0	lncRNA	30070-1_{1..413}	n325733|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044892|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044892|-1.0149200|-0.3632538	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325733|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044892|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044892|-1.0149200|-0.3632538	chr13	 48042775	 48043187	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23318_PI429285431	1.5523735	A	0.91464186	A	1.55588091215087	0	lncRNA	24889-1_{1..498}	lnc-RP11-33N16.1.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-33N16.1.1-3:2	chr14	 89830738	 89831235	+	lnc-RP11-33N16.1.1-3	lnc-RP11-33N16.1.1-3:2	ENSG00000258752.1	RP11-356K23.1	FOXN3	NA	chr14:89820738-89841043	inner
CUST_12249_PI429285431	2.500241	A	2.1889043	A	1.2408568583938	0	lncRNA	13855-1_{1..348}	lnc-RP11-17M16.1.1-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-17M16.1.1-6:4	chr18	 73963073	 73963420	+	lnc-RP11-17M16.1.1-6	lnc-RP11-17M16.1.1-6:4	XLOC_012725	linc-ZNF236-5	NA	NA	NA	inter
CUST_27404_PI429285431	1.5854431	A	0.9239247	A	1.58174649611709	0	lncRNA	28968-1_{1..366}	n324569|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039991|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039991|-1.1956100|-0.3719135	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324569|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039991|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039991|-1.1956100|-0.3719135	chr6	 22088792	 22089157	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6085_PI429285431	1.111047	A	1.676986	A	0.675515603799903	0	lncRNA	6010-1_{1..591}	"transcript_id ""ENST00000587189.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587189.1"" | genecode_v17"	chr18	 11488569	 11489159	+	ENSG00000267252.1	ENST00000587189.1	RP11-712C7.1	RP11-712C7.1-001	NA	NA	NA	inter
CUST_48686_PI429285431	5.632187	P	5.5933194	P	1.02730715631492	0	lncRNA	52527-1_{1..205}	hg19_lincRNAsTranscripts_TCONS_l2_00013870 range=chr2:105469951-105470961 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013870 range=chr2:105469951-105470961 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	105469951	105470155	+	NA	NA	NA	NA	POU3F3	NA	chr2:105471969-105473471	inter
CUST_48598_PI429285431	8.82552	P	8.369068	P	1.37216312342503	0	lncRNA	52444-1_{1..289}	hg19_lincRNAsTranscripts_TCONS_l2_00014514 range=chr2:38365601-38367600 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014514 range=chr2:38365601-38367600 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 38365601	 38365889	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47439_PI429285431	5.895355	P	6.60393	P	0.61192425928598	0	lncRNA	51473-1_{1..3000}	"gi|296278247|ref|NR_033674.1| Homo sapiens DiGeorge syndrome critical region gene 2 (DGCR2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|296278247|ref|NR_033674.1| Homo sapiens DiGeorge syndrome critical region gene 2 (DGCR2), transcript variant 5, non-coding RNA"	Chr22	 19023795	 19026794	-	9993	NR_033674.1	NA	NA	NA	NA	NA	inter
CUST_21540_PI429285431	0.92302454	A	1.6624897	A	0.598961359810488	0	lncRNA	23157-2_{3001..3368}	lnc-CTD-2517M22.14.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2517M22.14.1-1:3	chr8	145726360	145726727	-	lnc-CTD-2517M22.14.1-1	lnc-CTD-2517M22.14.1-1:3	ENSG00000261139.1	CTD-2517M14.5	MFSD3	"hg19_refFlat_PPP1R16A:range=chr8:145722578-1457272865'pad=0,hg19_refFlat_PPP1R16A:range=chr8:145722578-1457272865'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10chr8:145734552-145735663"	NA	inner
CUST_1931_PI429285431	0.9033602	A	0.90994865	A	0.995443646276522	0	lncRNA	1923-1_{1..411}	"transcript_id ""ENST00000513023.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513023.1"" | genecode_v17"	chr4	147032582	147032992	-	ENSG00000248809.1	ENST00000513023.1	RP11-6L6.3	RP11-6L6.3-003	NA	NA	NA	inter
CUST_6579_PI429285431	3.7102234	P	3.6097212	P	1.07214661022834	0	lncRNA	6527-1_{1..387}	"transcript_id ""ENST00000597420.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597420.1"" | genecode_v17"	chr19	 54292036	 54292422	+	ENSG00000269564.1	ENST00000597420.1	AC008753.4	AC008753.4-001	NLRP12	NA	chr19:54296838-54302422	inter
LNCA_21_P0004449	0.9158012	A	0.9201705	A	0.996976013509691	0	lncRNA	TCONS_00010506	NA	NA	NA	NA	XLOC_005026	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005026), lincRNA [TCONS_00010506]"	chr5:140088605-140088546	hs|5q31.3	Agilent_HUMAN_G3V2	TCONS_00010506	TCONS_00010506	chr5	140088546	140088605	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7781_PI429285431	5.5994883	P	5.1935754	P	1.32492702465305	0	lncRNA	9406-1_{1..3000}	lnc-RNF186-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF186-1:1	chr1	 20016321	 20019320	-	lnc-RNF186-1	lnc-RNF186-1:1	ENSG00000250744	ENST00000512048	TMCO4	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_CHRDL2:range=chr11:74407543-744419335'pad=0,hg19_refFlat_CHRDL2:range=chr11:74407543-744419335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20chr1:20008706-20026628"	NA	inner
CUST_5238_PI429285431	2.1765933	A	1.7514491	A	1.34270670205663	0	lncRNA	5179-1_{1..438}	"transcript_id ""ENST00000565543.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565543.1"" | genecode_v17"	chr15	 72900978	 72901415	-	ENSG00000259783.1	ENST00000565543.1	RP11-1006G14.2	RP11-1006G14.2-002	LOC646670	NA	chr15:72929419-72939260	inter
CUST_49318_PI429285431	2.7392864	A	2.2153146	A	1.43790842613503	0	lncRNA	53134-1_{1..259}	hg19_lincRNAsTranscripts_TCONS_l2_00022861 range=chr5:39721152-39721560 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022861 range=chr5:39721152-39721560 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 39721152	 39721410	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011965	1.8596292	A	0.9245796	A	1.91195636730894	0	lncRNA	ENST00000444030	NA	NA	NA	NA	XLOC_l2_008259	NA	ENST00000444030	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008259), lincRNA [TCONS_l2_00015960]"	chr2:130769717-130769658	hs|2q21.1	Agilent_HUMAN_G3V2	ENST00000444030	ENST00000444030	chr2	130769658	130769717	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28201_PI429285431	9.86713	P	9.47304	P	1.31411360326489	0	lncRNA	29830-1_{1..578}	n325484|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322598|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322598|-0.5640160|-0.1434728	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325484|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322598|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322598|-0.5640160|-0.1434728	chr2	  2853336	  2853913	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012574	1.0993446	A	1.0062877	A	1.06662784788406	0	lncRNA	BC042433	NA	BC042433	NA	NA	XLOC_l2_010586	NA	ENST00000505386	THC2618419	NA	"BROAD Institute lincRNA (XLOC_l2_010586), lincRNA [TCONS_l2_00020429]"	chr4:12252677-12252736	hs|4p15.33	Agilent_HUMAN_G3V2	BC042433	BC042433	chr4	 12252677	 12252736	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014483	8.876562	P	7.6060467	P	2.41247718707909	0	lncRNA	ENST00000424349	XR_110034	XR_110034	NA	Hs.517821	LOC100505641	NA	ENST00000424349	THC2541632	NA	"PREDICTED: Homo sapiens hypothetical LOC100505641, transcript variant 1 (LOC100505641), miscRNA [XR_110034]"	chr3:14984464-14984405	hs|3p25.1	Agilent_HUMAN_G3V2	ENST00000424349	ENST00000424349	chr3	 14984405	 14984464	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32577_PI429285431	4.118623	P	4.2722816	P	0.898967833592878	0	lncRNA	34240-1_{1..2433}	n339195|BC033353|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1627|NULL|-0.3839150|-0.2401244	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339195|BC033353|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1627|NULL|-0.3839150|-0.2401244	chr2	239928721	239931153	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32700_PI429285431	7.0977225	P	7.119594	P	0.984954168277975	0	lncRNA	34345-2_{3001..6000}	n339330|D87071|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1762|NULL|32.7604000|-0.0784163	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339330|D87071|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1762|NULL|32.7604000|-0.0784163	chr16	 88784754	 88787753	-	NA	NA	NA	NA	RNF166	NA	chr16:88771754-88772829	inner
CUST_19685_PI429285431	0.90004873	A	0.9017701	A	0.998807548773467	0	lncRNA	21342-1_{1..494}	lnc-GPT2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPT2-3:2	chr16	 47196462	 47196955	+	lnc-GPT2-3	lnc-GPT2-3:2	ENSG00000260281.1	RP11-329J18.2	ITFG1	"hg19_refFlat_ITFG1:range=chr16:47189630-474949565'pad=0,hg19_refFlat_ITFG1:range=chr16:47189630-474949565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50chr16:47189297-47206647"	NA	inner
CUST_48031_PI429285431	1.2545081	A	2.100519	A	0.556320857103193	0	lncRNA	51912-1_{1..1580}	"gi|410173744|ref|XR_172368.1| PREDICTED: Homo sapiens uncharacterized LOC388882 (LOC388882), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|410173744|ref|XR_172368.1| PREDICTED: Homo sapiens uncharacterized LOC388882 (LOC388882), misc_RNA"	NA	NA	NA	NA	NA	XR_172368.1	NA	NA	NA	NA	NA	Unknown
CUST_7172_PI429285431	0.9147824	A	0.9068457	A	1.00551646117261	0	lncRNA	7346-1_{1..315}	"transcript_id ""ENST00000411186.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411186.1"" | genecode_v17"	chr2	124626833	124627147	-	ENSG00000223118.1	ENST00000411186.1	RN7SKP102	RN7SKP102-201	NA	NA	NA	inter
CUST_2327_PI429285431	0.90718675	A	1.4922361	A	0.66662653498612	0	lncRNA	2319-1_{1..718}	"transcript_id ""ENST00000515704.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515704.1"" | genecode_v17"	chr5	117881553	117882270	-	ENSG00000250891.1	ENST00000515704.1	CTD-2281M20.1	CTD-2281M20.1-001	NA	NA	NA	inter
LNCA_21_P0010328	5.551384	P	4.9329505	P	1.53520732472912	0	lncRNA	ENST00000444039	NA	NA	NA	NA	XLOC_014161	NA	ENST00000444039	NA	NA	"BROAD Institute lincRNA (XLOC_014161), lincRNA [TCONS_00029333]"	chr22:21318788-21318847	hs|22q11.21	Agilent_HUMAN_G3V2	ENST00000444039	ENST00000444039	chr22	 21318788	 21318847	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14344_PI429285431	7.286632	P	7.4670305	P	0.882459210488738	0	lncRNA	16002-1_{1..410}	lnc-AC011298.2.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC011298.2.1-1:2	chr2	241627833	241628242	+	lnc-AC011298.2.1-1	lnc-AC011298.2.1-1:2	XLOC_001920	linc-AQP12A	AQP12B	NA	chr2:241617833-241622317	inter
CUST_11298_PI429285431	0.91718316	A	0.9170993	A	1.00005812901199	0	lncRNA	12861-1_{1..1388}	lnc-MAFB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAFB-1:1	chr20	 39345538	 39346925	-	lnc-MAFB-1	lnc-MAFB-1:1	XLOC_013743	linc-MAFB-1	NA	NA	NA	inter
CUST_31363_PI429285431	0.91661733	A	0.9235819	A	0.995184161456244	0	lncRNA	33143-1_{1..3000}	n337830|BX537613|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|213|NULL|-1.1625700|-0.3864746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337830|BX537613|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|213|NULL|-1.1625700|-0.3864746	chrX	110367492	110370491	+	NA	NA	NA	NA	PAK3	NA	chrX:110357492-110382431	inner
LNCA_21_P0007630	0.9263661	A	0.9177703	A	1.00597593964198	0	lncRNA	TCONS_00020574	NA	NA	NA	NA	XLOC_009890	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009890), lincRNA [TCONS_00020574]"	chr12:115060649-115060708	hs|12q24.21	Agilent_HUMAN_G3V2	TCONS_00020574	TCONS_00020574	chr12	115060649	115060708	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003361	1.4761382	A	1.821316	A	0.78721095347788	0	lncRNA	XR_108545	XR_108545	XR_108545	NA	Hs.156197	LOC100506827	uncharacterized LOC100506827	NA	THC2605456	NA	"PREDICTED: Homo sapiens hypothetical LOC100506827 (LOC100506827), miscRNA [XR_108545]"	chr4:44023787-44023846	hs|4p13	Agilent_HUMAN_G3V2	XR_108545	XR_108545	chr4	 44023787	 44023846	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49156_PI429285431	1.5170367	A	1.8769034	A	0.779236575081532	0	lncRNA	52982-1_{1..1700}	hg19_lincRNAsTranscripts_TCONS_l2_00020757 range=chr4:129390305-129433000 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020757 range=chr4:129390305-129433000 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	129390305	129392004	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5354_PI429285431	5.4374633	P	5.386771	P	1.03576183128003	0	lncRNA	5292-1_{1..369}	"transcript_id ""ENST00000559955.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559955.1"" | genecode_v17"	chr15	 98058517	 98058885	-	ENSG00000259524.1	ENST00000559955.1	RP11-461F11.1	RP11-461F11.1-001	NA	NA	NA	inter
LNCA_21_P0005791	0.9247408	A	0.9146285	A	1.00703393495881	0	lncRNA	TCONS_00014917	NA	NA	NA	NA	XLOC_006983	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006983), lincRNA [TCONS_00014917]"	chr8:5859018-5858959	hs|8p23.2	Agilent_HUMAN_G3V2	TCONS_00014917	TCONS_00014917	chr8	  5858959	  5859018	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6863_PI429285431	0.9026316	A	0.8941409	A	1.00590265719682	0	lncRNA	6813-1_{1..608}	"transcript_id ""ENST00000414189.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414189.1"" | genecode_v17"	chr21	 39695557	 39696164	-	ENSG00000231231.1	ENST00000414189.1	AP001422.3	AP001422.3-002	NA	NA	NA	inter
CUST_30541_PI429285431	1.7067052	A	1.6155826	A	1.06519871996873	0	lncRNA	32321-1_{1..545}	n335711|CR623776|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000302971|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000302971|-0.9701560|-0.4222797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335711|CR623776|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000302971|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000302971|-0.9701560|-0.4222797	chr10	  6085747	  6086291	-	NA	NA	NA	NA	IL2RA	NA	chr10:6075747-6096292	inner
CUST_41448_PI429285431	4.3990517	P	4.653143	P	0.838515117888017	0	lncRNA	42626-1_{1..94}	ENST00000584260 ncrna:miRNA chromosome:GRCh37:2:239991056:239991149:-1 gene:ENSG00000264103 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584260 ncrna:miRNA chromosome:GRCh37:2:239991056:239991149:-1 gene:ENSG00000264103 gene_biotype:miRNA transcript_biotype:miRNA	chr2	239991056	239991149	-	ENSG00000264103	ENST00000584260	NA	NA	HDAC4	NA	chr2:239981056-240001149	inner
CUST_35022_PI429285431	0.9696829	A	0.925382	A	1.03118336820675	0	lncRNA	36435-2_{3001..3168}	n341960|AK125933|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4441|NULL|1.8452400|-0.3019991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341960|AK125933|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4441|NULL|1.8452400|-0.3019991	chr12	 68729298	 68729465	+	NA	NA	NA	NA	MDM1	NA	chr12:68716298-68726161	inter
CUST_1950_PI429285431	1.4690707	A	1.5586767	A	0.939779367906306	0	lncRNA	1943-1_{1..410}	"transcript_id ""ENST00000603643.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603643.1"" | genecode_v17"	chr4	153229435	153229844	-	ENSG00000270302.1	ENST00000603643.1	RP11-461L13.4	RP11-461L13.4-001	NA	NA	NA	inter
CUST_2158_PI429285431	1.155586	A	0.9057811	A	1.18904630581279	0	lncRNA	2149-1_{1..870}	"transcript_id ""ENST00000511953.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511953.1"" | genecode_v17"	chr5	 53072844	 53073713	-	ENSG00000250447.1	ENST00000511953.1	CTD-2081C10.1	CTD-2081C10.1-002	NA	NA	NA	inter
CUST_46438_PI429285431	0.9020195	A	1.0702941	A	0.889906333947611	0	lncRNA	50647-2_{3001..6000}	"gi|225703129|ref|NR_027409.1| Homo sapiens golgin A8 family, member A (GOLGA8A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225703129|ref|NR_027409.1| Homo sapiens golgin A8 family, member A (GOLGA8A), transcript variant 2, non-coding RNA"	Chr15	 34674269	 34677268	-	23015	NR_027409.1	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
CUST_47218_PI429285431	0.8986307	A	0.90250105	A	0.997320873093127	0	lncRNA	51293-1_{1..2116}	"gi|210032069|ref|NR_024268.1| Homo sapiens prion protein (testis specific) (PRNT), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|210032069|ref|NR_024268.1| Homo sapiens prion protein (testis specific) (PRNT), transcript variant 2, non-coding RNA"	Chr20	  4711928	  4714043	-	149830	NR_024268.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014583	1.6757181	A	0.90649134	A	1.70435605646724	0	lncRNA	XR_110380	XR_110380	XR_110380	NA	Hs.606585	LOC100507033	uncharacterized LOC100507033	ENST00000455557	THC2483540	NA	"PREDICTED: Homo sapiens hypothetical LOC100507033 (LOC100507033), miscRNA [XR_110380]"	chr3:194217137-194217078	hs|3q29	Agilent_HUMAN_G3V2	XR_110380	XR_110380	chr3	194217078	194217137	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30946_PI429285431	0.9265442	A	0.92860585	A	0.998571993687918	0	lncRNA	32734-1_{1..269}	n337045|DQ123826|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341910_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341910_07|-0.7364060|-0.1622200	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337045|DQ123826|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341910_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341910_07|-0.7364060|-0.1622200	chr6	  2834388	  2834656	+	NA	NA	NA	NA	SERPINB1	NA	chr6:2833733-2842081	inter
CUST_36271_PI429285431	5.416581	P	5.4029083	P	1.00952224425946	0	lncRNA	37508-1_{1..829}	n344802|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_351|NULL|-1.3826700|-0.3329522	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344802|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_351|NULL|-1.3826700|-0.3329522	chr1	 95143530	 95144358	+	NA	NA	NA	NA	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-14.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30"	NA	inter
CUST_7770_PI429285431	0.9666204	A	1.6935556	A	0.604186058668654	0	lncRNA	9396-1_{1..3000}	lnc-ZNF691-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF691-1:2	chr1	 43439645	 43442644	+	lnc-ZNF691-1	lnc-ZNF691-1:2	ENSG00000227533	RP5-848E13.3	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00"	NA	inter
CUST_10429_PI429285431	1.1011208	A	0.97589314	A	1.09067983042172	0	lncRNA	11957-1_{1..883}	lnc-USP16-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-USP16-3:8	chr21	 29474869	 29475751	+	lnc-USP16-3	lnc-USP16-3:8	XLOC_013900	linc-USP16-5	NA	NA	NA	inter
CUST_22856_PI429285431	1.7084491	A	1.5509369	A	1.11536213544559	0	lncRNA	24434-1_{1..523}	lnc-RHOXF2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RHOXF2-1:3	chrX	119255667	119256189	+	lnc-RHOXF2-1	lnc-RHOXF2-1:3	ENSG00000258545.1	RP4-755D9.1	RHOXF1	NA	chrX:119245667-119249847	inter
CUST_35578_PI429285431	3.4813633	P	3.6772099	P	0.873060417645501	0	lncRNA	36993-1_{1..749}	n342710|AJ238554|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5212|NULL|-1.1391500|-0.4135264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342710|AJ238554|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5212|NULL|-1.1391500|-0.4135264	chr17	 43669986	 43670734	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005887	0.9148598	A	0.9018529	A	1.00905645986316	0	lncRNA	TCONS_00015140	NA	NA	NA	NA	XLOC_007186	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007186), lincRNA [TCONS_00015140]"	chr8:117441970-117441911	hs|8q23.3	Agilent_HUMAN_G3V2	TCONS_00015140	TCONS_00015140	chr8	117441911	117441970	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28729_PI429285431	0.9036802	A	0.90642923	A	0.99809633188526	0	lncRNA	30429-1_{1..742}	n326121|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046441|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046441|-1.0584500|-0.2899200	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326121|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046441|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046441|-1.0584500|-0.2899200	chr10	  2337276	  2338017	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17581_PI429285431	0.90013003	A	0.89852446	A	1.00111351581759	0	lncRNA	19306-1_{1..346}	lnc-RP11-327F22.5.1-7:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-327F22.5.1-7:4	chr16	 51806287	 51806632	+	lnc-RP11-327F22.5.1-7	lnc-RP11-327F22.5.1-7:4	XLOC_011722	linc-CHD9-6	NA	NA	NA	inter
LNCA_21_P0008103	1.6184487	A	3.194905	P	0.335304488318619	0	lncRNA	TCONS_00021871	NA	NA	NA	NA	XLOC_010470	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010470), lincRNA [TCONS_00021871]"	chr13:91793638-91793697	hs|13q31.3	Agilent_HUMAN_G3V2	TCONS_00021871	TCONS_00021871	chr13	 91793638	 91793697	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20269_PI429285431	4.7837	P	4.6934485	P	1.06455574657281	0	lncRNA	21912-1_{1..448}	lnc-TMED5-1:24	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMED5-1:24	chr1	 93790192	 93790639	-	lnc-TMED5-1	lnc-TMED5-1:24	ENSG00000223745.1	RP4-717I23.3	NA	"hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0,hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10"	NA	inter
CUST_16304_PI429285431	0.9195962	A	0.9197454	A	0.999896587788072	0	lncRNA	18010-1_{1..463}	lnc-PEX2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PEX2-1:6	chr8	 77509570	 77510032	-	lnc-PEX2-1	lnc-PEX2-1:6	XLOC_007126	linc-JPH1-3	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20"	NA	inter
CUST_35008_PI429285431	7.7201214	P	6.990986	P	1.6576453752221	0	lncRNA	36422-1_{1..2029}	n341939|AK130541|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4420|NULL|-1.1650700|-0.3266570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341939|AK130541|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4420|NULL|-1.1650700|-0.3266570	chr12	 58497689	 58499717	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25140_PI429285431	3.6963837	P	4.566046	P	0.547274939459385	0	lncRNA	26678-1_{1..973}	lnc-RXRG-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RXRG-1:4	chr1	165508672	165509644	-	lnc-RXRG-1	lnc-RXRG-1:4	ENSG00000237463.1	RP11-280O1.2	LRRC52	NA	chr1:165513478-165518849	inter
CUST_25975_PI429285431	1.5169731	A	0.8878336	A	1.54664221875223	0	lncRNA	27495-1_{1..505}	lnc-TRIML2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIML2-1:1	chr4	189064082	189064586	-	lnc-TRIML2-1	lnc-TRIML2-1:1	ENSG00000247130.2	RP11-366H4.3	TRIML1	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20chr4:189060598-189068649"	NA	inner
CUST_22874_PI429285431	1.1074834	A	0.88670653	A	1.16536094722223	0	lncRNA	24451-1_{1..602}	lnc-TTC9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTC9-1:2	chr14	 71178727	 71179328	+	lnc-TTC9-1	lnc-TTC9-1:2	ENSG00000258689.1	RP6-65G23.1	NA	NA	NA	inter
CUST_7389_PI429285431	4.1878753	P	4.331194	P	0.905433945126933	0	lncRNA	9035-1_{1..662}	lnc-OSBPL6-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OSBPL6-2:7	chr2	179296897	179297558	+	lnc-OSBPL6-2	lnc-OSBPL6-2:7	ENSG00000223960	AC009948.5	PRKRA	"hg19_refFlat_PRKRA:range=chr2:179296824-1793157575'pad=0,hg19_refFlat_PRKRA:range=chr2:179296824-1793157575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_PRKRA:range=chr2:179296824-1793151285'pad=0,hg19_refFlat_PRKRA:range=chr2:179296824-1793151285'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_PRKRA:range=chr2:179296824-1793151705'pad=0,hg19_refFlat_PRKRA:range=chr2:179296824-1793151705'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70chr2:179296141-179307009"	NA	inner
CUST_4503_PI429285431	0.9149899	A	0.91677535	A	0.998763185852328	0	lncRNA	4452-1_{1..1930}	"transcript_id ""ENST00000544645.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544645.1"" | genecode_v17"	chr12	128399917	128401846	+	ENSG00000256193.1	ENST00000544645.1	LINC00507	LINC00507-002	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00"	NA	inter
LNCA_21_P0001561	5.1482754	P	5.5653334	P	0.7489503569028	0	lncRNA	TCONS_00001613	NA	NA	NA	NA	XLOC_000943	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000943), lincRNA [TCONS_00001613]"	chr1:102853580-102853521	hs|1p21.1	Agilent_HUMAN_G3V2	TCONS_00001613	TCONS_00001613	chr1	102853521	102853580	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_174_PI429285431	3.5536735	P	3.1481698	P	1.32455128117132	0	lncRNA	164-1_{1..491}	"transcript_id ""ENST00000420211.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420211.1"" | genecode_v17"	chr1	 18712323	 18712813	+	ENSG00000225387.1	ENST00000420211.1	RP11-422P22.1	RP11-422P22.1-001	IGSF21	NA	chr1:18702323-18704977	inter
CUST_37100_PI429285431	0.90087646	A	0.8966264	A	1.00295026058414	0	lncRNA	38225-1_{1..1542}	n345543|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1092|NULL|-1.3224400|-0.4350671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345543|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1092|NULL|-1.3224400|-0.4350671	chr2	139176480	139178021	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22571_PI429285431	0.898811	A	0.8945098	A	1.00298581334058	0	lncRNA	24158-1_{1..555}	lnc-API5-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-API5-5:3	chr11	 41756222	 41756776	+	lnc-API5-5	lnc-API5-5:3	ENSG00000255171.1	RP11-375D13.2	NA	NA	NA	inter
CUST_37486_PI429285431	2.4762313	A	2.7508292	A	0.826680693929	0	lncRNA	38586-1_{1..345}	n345946|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1495|NULL|-1.6615500|-0.1756460	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345946|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1495|NULL|-1.6615500|-0.1756460	chr15	102085845	102086189	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8210_PI429285431	1.4075676	A	1.7400823	A	0.79415102596403	0	lncRNA	9803-1_{1..823}	lnc-FEZF2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FEZF2-1:7	chr3	 62304541	 62305363	-	lnc-FEZF2-1	lnc-FEZF2-1:7	ENSG00000241472	RP11-204J18.3	C3orf14	NA	chr3:62305396-62314567	inter
CUST_12493_PI429285431	0.9114616	A	0.9025112	A	1.00622322884771	0	lncRNA	14104-1_{1..378}	lnc-ZNF804B-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF804B-2:5	chr7	 89125948	 89126325	+	lnc-ZNF804B-2	lnc-ZNF804B-2:5	XLOC_006163	linc-STEAP1-3	NA	NA	NA	inter
CUST_5363_PI429285431	9.089754	P	9.739588	P	0.637353644901124	0	lncRNA	5301-1_{1..588}	"transcript_id ""ENST00000557962.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557962.1"" | genecode_v17"	chr15	101389766	101390353	+	ENSG00000232386.4	ENST00000557962.1	RP11-66B24.2	RP11-66B24.2-004	NA	NA	NA	inter
CUST_18349_PI429285431	1.0001402	A	0.911834	A	1.06312128904957	0	lncRNA	20077-1_{1..1739}	lnc-SLC39A11-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC39A11-2:3	chr17	 70116904	 70118642	-	lnc-SLC39A11-2	lnc-SLC39A11-2:3	ENSG00000234899	AC005152.2	SOX9	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20chr17:70117161-70122561"	NA	inter
CUST_23766_PI429285431	0.9116078	A	0.9112314	A	1.00026093463628	0	lncRNA	25329-1_{1..538}	lnc-FKBP9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FKBP9-1:1	chr7	 33056212	 33056749	+	lnc-FKBP9-1	lnc-FKBP9-1:1	ENSG00000237059.1	AC083863.7	FKBP9	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30chr7:33046212-33046543"	NA	inner
CUST_14519_PI429285431	8.277335	P	8.271416	P	1.00411116591362	0	lncRNA	16185-1_{1..2211}	lnc-KIF26A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIF26A-1:1	chr14	104674355	104676565	+	lnc-KIF26A-1	lnc-KIF26A-1:1	XLOC_010947	linc-C14orf180-2	NA	NA	NA	inter
CUST_12571_PI429285431	3.069865	P	3.8956094	P	0.564191016704823	0	lncRNA	14179-2_{3001..3244}	lnc-FRMD1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRMD1-4:1	chr6	168200289	168200532	-	lnc-FRMD1-4	lnc-FRMD1-4:1	XLOC_005924	linc-TCP10-4	NA	NA	NA	inter
CUST_41163_PI429285431	6.4209204	P	6.8316126	P	0.752262354276132	0	lncRNA	41981-1_{1..98}	ENST00000384960 ncrna:miRNA chromosome:GRCh37:9:140732871:140732968:1 gene:ENSG00000207693 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384960 ncrna:miRNA chromosome:GRCh37:9:140732871:140732968:1 gene:ENSG00000207693 gene_biotype:miRNA transcript_biotype:miRNA	chr9	140732871	140732968	+	ENSG00000207693	ENST00000384960	NA	NA	EHMT1	NA	chr9:140722871-140730579	inter
CUST_51076_PI429285431	9.175356	P	8.358552	P	1.76149942023924	0	lncRNA	54714-1_{1..730}	hg19_lincRNAsTranscripts_TCONS_l2_00006843 range=chr13:48337599-48338514 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006843 range=chr13:48337599-48338514 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 48337599	 48338328	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33563_PI429285431	0.89788646	A	0.91282785	A	0.989696862386127	0	lncRNA	35129-1_{1..3000}	n340313|AK128141|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2774|NULL|-0.8278660|-0.1639401	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340313|AK128141|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2774|NULL|-0.8278660|-0.1639401	chr5	  6767320	  6770319	-	NA	NA	NA	NA	NA	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-23.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30"	NA	inter
CUST_1496_PI429285431	4.8960934	P	5.198052	P	0.811150432253758	0	lncRNA	1483-1_{1..525}	"transcript_id ""ENST00000498005.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000498005.1"" | genecode_v17"	chr3	149956487	149957011	+	ENSG00000244541.1	ENST00000498005.1	RP11-167H9.6	RP11-167H9.6-001	NA	NA	NA	inter
CUST_30477_PI429285431	8.324908	P	8.177128	P	1.10786339425779	0	lncRNA	32257-1_{1..398}	n335623|CR601706|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000280901|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000280901|0.2502280|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335623|CR601706|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000280901|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000280901|0.2502280|-1.0000000	chr14	105399175	105399572	+	NA	NA	NA	NA	AHNAK2	NA	chr14:105403591-105409573	inner
CUST_37161_PI429285431	0.9213068	A	0.9097539	A	1.0080400087304	0	lncRNA	38278-1_{1..360}	n345597|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1146|NULL|-1.5206300|-0.2802172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345597|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1146|NULL|-1.5206300|-0.2802172	chr3	136744771	136745130	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49621_PI429285431	5.6301985	P	6.1187124	P	0.712758922787795	0	lncRNA	53407-1_{1..2392}	hg19_lincRNAsTranscripts_TCONS_l2_00025639 range=chr7:6677349-6693311 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025639 range=chr7:6677349-6693311 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  6677349	  6679740	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41943_PI429285431	5.0772333	P	5.308735	P	0.851747846600899	0	lncRNA	43701-1_{1..97}	ENST00000384868 ncrna:miRNA chromosome:GRCh37:8:10892716:10892812:-1 gene:ENSG00000207600 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384868 ncrna:miRNA chromosome:GRCh37:8:10892716:10892812:-1 gene:ENSG00000207600 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 10892716	 10892812	-	ENSG00000207600	ENST00000384868	NA	NA	XKR6	NA	chr8:10882716-10902812	inner
CUST_23247_PI429285431	2.3090012	A	2.388754	A	0.946219763791739	0	lncRNA	24819-1_{1..985}	lnc-CENPBD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CENPBD1-1:1	chr16	 89988985	 89989969	-	lnc-CENPBD1-1	lnc-CENPBD1-1:1	ENSG00000259006.1	RP11-566K11.4	TUBB3	"hg19_refFlat_MC1R:range=chr16:89985667-899866205'pad=0,hg19_refFlat_MC1R:range=chr16:89985667-899866205'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.90chr16:89988417-89999070"	NA	inner
CUST_13450_PI429285431	1.799213	A	1.5395042	A	1.19723702456937	0	lncRNA	15088-1_{1..1936}	lnc-DNAJB11-3:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAJB11-3:11	chr3	186162695	186164630	+	lnc-DNAJB11-3	lnc-DNAJB11-3:11	XLOC_002958	linc-DNAJB11-3	NA	NA	NA	inter
CUST_4645_PI429285431	3.2527375	P	3.3965232	P	0.905140903831609	0	lncRNA	4591-1_{1..823}	"transcript_id ""ENST00000595711.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595711.1"" | genecode_v17"	chr13	 75126640	 75127462	+	ENSG00000236678.2	ENST00000595711.1	LINC00347	LINC00347-005	NA	NA	NA	inter
CUST_48292_PI429285431	2.0418975	A	2.4110506	A	0.774236860832604	0	lncRNA	52150-1_{1..2121}	hg19_lincRNAsTranscripts_TCONS_l2_00000117 range=chr1:16972088-16976526 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000117 range=chr1:16972088-16976526 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16972088	 16974208	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19725_PI429285431	1.2948022	A	0.9120461	A	1.30383029290476	0	lncRNA	21383-1_{1..408}	lnc-MAP3K9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP3K9-2:1	chr14	 71693898	 71694305	-	lnc-MAP3K9-2	lnc-MAP3K9-2:1	ENSG00000257692.2	RP1-292L20.1	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.91;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-22.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80"	NA	inter
CUST_39351_PI429285431	6.2487507	P	6.096157	P	1.11156606786077	0	lncRNA	40317-1_{1..1229}	n386439|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lad.2||1.3783900|-0.1200525	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386439|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lad.2||1.3783900|-0.1200525	chr7	 65996302	 65997530	-	NA	NA	NA	NA	NA	"hg19_refFlat_GTF2IRD1:range=chr7:73922411-740167605'pad=0,hg19_refFlat_GTF2IRD1:range=chr7:73922411-740167605'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10"	NA	inter
CUST_26930_PI429285431	0.9275105	A	0.92810947	A	0.999584911806211	0	lncRNA	28450-1_{1..202}	n324009|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053465|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053465|-0.9114550|-0.4457833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324009|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053465|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053465|-0.9114550|-0.4457833	chr9	105045828	105046029	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16340_PI429285431	1.1494569	A	0.89805657	A	1.19036196117894	0	lncRNA	18041-1_{1..1008}	lnc-CDKN2C-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDKN2C-1:2	chr1	 51475180	 51476187	+	lnc-CDKN2C-1	lnc-CDKN2C-1:2	XLOC_000190	linc-C1orf185	NA	NA	NA	inter
CUST_12185_PI429285431	0.9127486	A	0.9126683	A	1.00005566126763	0	lncRNA	13785-1_{1..467}	lnc-TRIML1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIML1-2:1	chr4	189099277	189099743	+	lnc-TRIML1-2	lnc-TRIML1-2:1	XLOC_003833	linc-FRG1-11	NA	NA	NA	inter
CUST_9640_PI429285431	0.9121594	A	0.91733587	A	0.996418373793734	0	lncRNA	11158-1_{1..884}	lnc-TCL1B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCL1B-3:2	chr14	 96108355	 96109238	+	lnc-TCL1B-3	lnc-TCL1B-3:2	XLOC_010918	linc-TCL1B-1	NA	NA	NA	inter
CUST_4696_PI429285431	3.0488563	P	3.8289173	P	0.582342170134841	0	lncRNA	4643-1_{1..376}	"transcript_id ""ENST00000440860.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440860.1"" | genecode_v17"	chr13	112554299	112554674	+	ENSG00000226903.1	ENST00000440860.1	LINC00354	LINC00354-002	NA	NA	NA	inter
CUST_374_PI429201921	0.9095057	A	0.90983444	A	0.999772160755167	0	lncRNA	240-1_{...	TC6_apd_hap1000113.hg.1	TCONS_l2_00031069-XLOC_l2_015973 // Broad TUCP // linc-BMS1-11 chr6_apd_hap1:+:4149460-4158503 // chr6_apd_hap1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6_apd_hap1:+:4149460-4158503	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031069-XLOC_l2_015973	linc-BMS1-11	chr6_apd_hap1	  4149460	  4158503	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44792_PI429285431	3.6490786	P	3.8863535	P	0.848346237186317	0	lncRNA	49329-1_{1..1736}	"gi|341915367|ref|XR_132744.1| PREDICTED: Homo sapiens uncharacterized LOC100506276 (LOC100506276), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915367|ref|XR_132744.1| PREDICTED: Homo sapiens uncharacterized LOC100506276 (LOC100506276), misc_RNA"	NA	NA	NA	NA	NA	XR_132744.1	NA	NA	NA	NA	NA	Unknown
CUST_14331_PI429285431	2.01893	A	2.1756501	A	0.897062183515029	0	lncRNA	15988-2_{3001..6000}	lnc-HMBOX1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HMBOX1-1:2	chr8	 28924693	 28927692	+	lnc-HMBOX1-1	lnc-HMBOX1-1:2	XLOC_006753	linc-LEPROTL1-6	KIF13B	NA	chr8:28924795-28932445	inter
CUST_36379_PI429285431	1.3645947	A	0.9059956	A	1.3742067742146	0	lncRNA	37598-1_{1..594}	n344897|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_446|NULL|-1.3168300|-0.3219051	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344897|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_446|NULL|-1.3168300|-0.3219051	chr6	 37085135	 37085728	+	NA	NA	NA	NA	PIM1	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70chr6:37075135-37095729"	NA	inter
CUST_7605_PI429285431	1.405442	A	1.1474915	A	1.19577876796352	0	lncRNA	9240-1_{1..615}	lnc-SLITRK6-9:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK6-9:3	chr13	 88323091	 88323705	-	lnc-SLITRK6-9	lnc-SLITRK6-9:3	ENSG00000228824	XLOC_010683	SLITRK5	NA	chr13:88324870-88331871	inter
CUST_13840_PI429285431	4.6607313	P	4.820221	P	0.895341708932659	0	lncRNA	15483-1_{1..769}	lnc-BOD1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-BOD1-2:3	chr5	173217812	173218580	-	lnc-BOD1-2	lnc-BOD1-2:3	XLOC_005088	linc-BOD1-2	NA	NA	NA	inter
CUST_24511_PI429285431	1.9916604	A	2.1488736	A	0.896755628238517	0	lncRNA	26062-1_{1..554}	lnc-CT62-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CT62-1:2	chr15	 71481155	 71481708	-	lnc-CT62-1	lnc-CT62-1:2	ENSG00000259964.1	RP11-673C5.2	THSD4	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40chr15:71471155-71491368"	NA	inner
CUST_47916_PI429285431	0.90998167	A	0.90719473	A	1.00193362665301	0	lncRNA	51807-1_{1..687}	"gi|410172053|ref|XR_171566.1| PREDICTED: Homo sapiens uncharacterized LOC101060688 (LOC101060688), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172053|ref|XR_171566.1| PREDICTED: Homo sapiens uncharacterized LOC101060688 (LOC101060688), misc_RNA"	NA	NA	NA	NA	NA	XR_171566.1	NA	NA	NA	NA	NA	Unknown
CUST_31699_PI429285431	1.3378749	A	0.91821086	A	1.33761602823594	0	lncRNA	33443-1_{1..2377}	n338228|AK097507|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|620|NULL|-1.1278200|-0.3269447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338228|AK097507|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|620|NULL|-1.1278200|-0.3269447	chr14	 26289571	 26291947	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46241_PI429285431	6.945163	P	6.412647	P	1.44644954489005	0	lncRNA	50480-1_{1..640}	"gi|224177471|ref|NR_026983.1| Homo sapiens basic transcription factor 3 pseudogene 11 (BTF3P11), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224177471|ref|NR_026983.1| Homo sapiens basic transcription factor 3 pseudogene 11 (BTF3P11), non-coding RNA"	Chr13	 77502585	 77503224	+	690	NR_026983.1	NA	NA	NA	NA	NA	inter
CUST_34438_PI429285431	0.9214677	A	0.9112165	A	1.00713089498388	0	lncRNA	35917-2_{3001..5155}	n341314|BX537723|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3783|NULL|-0.3407350|-0.2933324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341314|BX537723|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3783|NULL|-0.3407350|-0.2933324	chr7	127002843	127004997	-	NA	NA	NA	NA	ZNF800	NA	chr7:127010353-127014813	inter
CUST_41333_PI429285431	10.718006	P	10.635586	P	1.05879258763284	0	lncRNA	42391-1_{1..95}	ENST00000583807 ncrna:miRNA chromosome:GRCh37:9:92785723:92785817:-1 gene:ENSG00000263967 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583807 ncrna:miRNA chromosome:GRCh37:9:92785723:92785817:-1 gene:ENSG00000263967 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 92785723	 92785817	-	ENSG00000263967	ENST00000583807	NA	NA	NA	NA	NA	inter
CUST_43042_PI429285431	9.138485	P	9.257295	P	0.920946976060757	0	lncRNA	46667-1_{1..111}	ENST00000408635 ncrna:snRNA chromosome:GRCh37:5:129310584:129310694:1 gene:ENSG00000221562 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408635 ncrna:snRNA chromosome:GRCh37:5:129310584:129310694:1 gene:ENSG00000221562 gene_biotype:snRNA transcript_biotype:snRNA	chr5	129310584	129310694	+	ENSG00000221562	ENST00000408635	NA	NA	CHSY3	NA	chr5:129300584-129320694	inner
CUST_14589_PI429285431	7.2918067	P	7.476675	P	0.879729380538445	0	lncRNA	16256-1_{1..356}	lnc-RP3-377D14.1.1-7:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP3-377D14.1.1-7:4	chr1	142624070	142624425	+	lnc-RP3-377D14.1.1-7	lnc-RP3-377D14.1.1-7:4	XLOC_000377	linc-NBPF9-7	NA	NA	NA	inter
CUST_1690_PI429285431	0.89807284	A	0.90857744	A	0.992745210089962	0	lncRNA	1673-1_{1..593}	"transcript_id ""ENST00000508998.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508998.1"" | genecode_v17"	chr4	 11724061	 11724653	+	ENSG00000249631.1	ENST00000508998.1	RP11-281P23.2	RP11-281P23.2-002	NA	NA	NA	inter
CUST_14317_PI429285431	3.8640625	P	3.2980337	P	1.48044285125097	0	lncRNA	15975-1_{1..1015}	lnc-UQCRFS1-9:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UQCRFS1-9:7	chr19	 28284440	 28285454	-	lnc-UQCRFS1-9	lnc-UQCRFS1-9:7	XLOC_013282	linc-ZNF681-4	NA	NA	NA	inter
CUST_7641_PI429285431	9.180306	P	9.1659355	P	1.01001064616823	0	lncRNA	9272-1_{1..560}	lnc-UBQLN2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-UBQLN2-2:1	chrX	 56843753	 56844312	+	lnc-UBQLN2-2	lnc-UBQLN2-2:1	ENSG00000204272	RP11-622K12.1	NA	NA	NA	inter
CUST_44839_PI429285431	7.250395	P	7.2420993	P	1.00576670485974	0	lncRNA	49368-1_{1..3000}	"gi|382544786|ref|NR_047514.1| Homo sapiens antisense of IGF2R non-protein coding RNA (AIRN), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|382544786|ref|NR_047514.1| Homo sapiens antisense of IGF2R non-protein coding RNA (AIRN), transcript variant 2, non-coding RNA"	Chr6	160424323	160427322	-	100271873	NR_047514.1	NA	NA	NA	NA	NA	inter
CUST_16990_PI429285431	4.614807	P	4.8168583	P	0.869313648094228	0	lncRNA	18700-1_{1..391}	lnc-RP11-90J19.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-90J19.1.1-3:1	chr15	 47106111	 47106501	-	lnc-RP11-90J19.1.1-3	lnc-RP11-90J19.1.1-3:1	XLOC_011468	linc-SLC30A4-1	NA	NA	NA	inter
CUST_10248_PI429285431	1.6557629	A	2.2326715	A	0.670398766655179	0	lncRNA	11774-1_{1..429}	lnc-NR5A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR5A2-1:1	chr1	200384493	200384921	+	lnc-NR5A2-1	lnc-NR5A2-1:1	XLOC_000515	linc-CAMSAP1L1-2	ZNF281	NA	chr1:200375420-200379166	inter
CUST_24304_PI429285431	0.8916796	A	0.89447945	A	0.998061173822899	0	lncRNA	25855-1_{1..561}	lnc-CCL2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCL2-7:1	chr17	 31961756	 31962316	+	lnc-CCL2-7	lnc-CCL2-7:1	ENSG00000265115.1	RP11-31I22.2	ACCN1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50chr17:31951756-31972076"	NA	inner
CUST_40738_PI429285431	0.90486175	A	0.91107404	A	0.995703226361759	0	lncRNA	41469-2_{3001..3789}	n410449|NR_037591|lncRNA|Homosapiens||RefGeneNoncode|NR_037591||3.3896300|-0.2598315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410449|NR_037591|lncRNA|Homosapiens||RefGeneNoncode|NR_037591||3.3896300|-0.2598315	chr1	 33476540	 33477328	-	NA	NA	NA	NA	AK2	NA	chr1:33473541-33502512	inter
CUST_42788_PI429285431	0.91854274	A	0.90725577	A	1.00785421522093	0	lncRNA	45778-1_{1..74}	ENST00000410163 ncrna:snoRNA chromosome:GRCh37:14:101460594:101460667:1 gene:ENSG00000222095 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410163 ncrna:snoRNA chromosome:GRCh37:14:101460594:101460667:1 gene:ENSG00000222095 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101460594	101460667	+	ENSG00000222095	ENST00000410163	NA	NA	NA	NA	NA	inter
CUST_45763_PI429285431	9.096434	P	8.788298	P	1.23810699922753	0	lncRNA	50108-1_{1..1654}	"gi|345525395|ref|NR_028491.2| Homo sapiens transmembrane protein 41B (TMEM41B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|345525395|ref|NR_028491.2| Homo sapiens transmembrane protein 41B (TMEM41B), transcript variant 3, non-coding RNA"	Chr11	  9302201	  9303854	-	440026	NR_028491.2	NA	NA	NA	NA	NA	inter
CUST_16385_PI429285431	2.1797268	A	1.4059198	A	1.70977561113801	0	lncRNA	18083-1_{1..1866}	lnc-SEPT7L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SEPT7L-1:1	chr10	 38739326	 38741191	-	lnc-SEPT7L-1	lnc-SEPT7L-1:1	XLOC_008784	linc-ZNF25-2	NA	NA	NA	inter
CUST_47953_PI429285431	0.9018424	A	1.7620953	A	0.55085598611537	0	lncRNA	51844-1_{1..1748}	"gi|410172539|ref|XR_171846.1| PREDICTED: Homo sapiens uncharacterized LOC100507663 (LOC100507663), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172539|ref|XR_171846.1| PREDICTED: Homo sapiens uncharacterized LOC100507663 (LOC100507663), misc_RNA"	NA	NA	NA	NA	NA	XR_171846.1	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SETMAR:range=chr3:4345055-43589305'pad=0,hg19_refFlat_SETMAR:range=chr3:4345055-43589305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_PGM3:range=chr6:83876106-839007315'pad=0,hg19_refFlat_PGM3:range=chr6:83876106-839007315'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70"	NA	Unknown
CUST_27146_PI429285431	5.573864	P	5.531721	P	1.02964213655294	0	lncRNA	28682-1_{1..242}	n324262|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323690|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323690|-0.9629910|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324262|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323690|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323690|-0.9629910|-1.0000000	chr7	  1514816	  1515057	-	NA	NA	NA	NA	INTS1	NA	chr7:1509913-1525589	inner
CUST_10747_PI429285431	2.445258	P	2.060801	A	1.30536838147699	0	lncRNA	12283-1_{1..769}	lnc-SERPINI1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERPINI1-3:2	chr3	167596197	167596965	+	lnc-SERPINI1-3	lnc-SERPINI1-3:2	XLOC_002908	linc-MYNN-6	NA	NA	NA	inter
CUST_5921_PI429285431	5.866329	P	4.652848	P	2.31896492664173	0	lncRNA	5849-1_{1..1948}	"transcript_id ""ENST00000407042.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000407042.3"" | genecode_v17"	chr17	 58085489	 58087436	-	ENSG00000267104.1	ENST00000407042.3	TBC1D3P1-DHX40P1	TBC1D3P1-DHX40P1-201	NA	NA	NA	inter
CUST_48570_PI429285431	3.6443145	P	3.7667778	P	0.918617835686292	0	lncRNA	52418-1_{1..936}	hg19_lincRNAsTranscripts_TCONS_l2_00013424 range=chr2:742786-748548 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013424 range=chr2:742786-748548 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	   742786	   743721	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2961_PI429285431	0.92476535	A	1.1562924	A	0.85173288043161	0	lncRNA	2942-1_{1..3000}	"transcript_id ""ENST00000444158.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444158.1"" | genecode_v17"	chr7	157258925	157261924	+	ENSG00000234210.1	ENST00000444158.1	AC006372.4	AC006372.4-001	NA	NA	NA	inter
CUST_16346_PI429285431	8.2589035	P	8.242741	P	1.01126597981304	0	lncRNA	18046-1_{1..1461}	lnc-TMEM105-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM105-2:3	chr17	 79359092	 79360552	-	lnc-TMEM105-2	lnc-TMEM105-2:3	XLOC_012586	linc-TMEM105-1	LOC100130370	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70chr17:79352934-79357447"	NA	inter
CUST_52196_PI429285431	1.8925759	A	1.711899	A	1.13341554930505	0	lncRNA	55712-1_{1..424}	hg19_lincRNAsTranscripts_TCONS_l2_00017674 range=chr22:25915879-25916821 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017674 range=chr22:25915879-25916821 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 25915879	 25916302	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47269_PI429285431	10.386001	P	9.143431	P	2.36619668569188	0	lncRNA	51339-2_{3001..5378}	"gi|226246632|ref|NR_027451.1| Homo sapiens long intergenic non-protein coding RNA 657 (LINC00657), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|226246632|ref|NR_027451.1| Homo sapiens long intergenic non-protein coding RNA 657 (LINC00657), non-coding RNA"	Chr20	 34636540	 34638917	-	647979	NR_027451.1	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50"	NA	inter
CUST_44973_PI429285431	0.91808265	A	3.0153487	A	0.233700698295646	0	lncRNA	49484-1_{1..656}	"gi|410170518|ref|XR_171042.1| PREDICTED: Homo sapiens uncharacterized LOC101060147, transcript variant 1 (LOC101060147), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170518|ref|XR_171042.1| PREDICTED: Homo sapiens uncharacterized LOC101060147, transcript variant 1 (LOC101060147), misc_RNA"	NA	NA	NA	NA	NA	XR_171042.1	NA	NA	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	Unknown
CUST_18232_PI429285431	5.2720504	P	4.541773	P	1.65895804380396	0	lncRNA	19967-1_{1..3000}	lnc-FAM72B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-FAM72B-2:2	chr1	120930521	120933520	+	lnc-FAM72B-2	lnc-FAM72B-2:2	ENSG00000233029	RP11-439A17.9	FCGR1B	NA	chr1:120926908-120935944	inner
CUST_24862_PI429285431	3.0433648	P	3.5503836	P	0.703675017896285	0	lncRNA	26402-1_{1..591}	lnc-TADA2B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TADA2B-1:1	chr4	  7000502	  7001092	+	lnc-TADA2B-1	lnc-TADA2B-1:1	ENSG00000187904.3	AC097382.5	TBC1D14	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90chr4:6990502-7010685"	NA	inner
CUST_44718_PI429285431	3.0356672	A	3.9251828	P	0.539795329775402	0	lncRNA	49273-1_{1..653}	"gi|262118184|ref|NR_029461.1| Homo sapiens leukocyte specific transcript 1 (LST1), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|262118184|ref|NR_029461.1| Homo sapiens leukocyte specific transcript 1 (LST1), transcript variant 7, non-coding RNA"	NT_167249.1	  2884758	  2885410	+	7940	NR_029461.1	NA	NA	NA	NA	NA	Unknown
CUST_17951_PI429285431	0.91998136	A	1.0836257	A	0.892767033495024	0	lncRNA	19682-1_{1..3000}	lnc-AL137145.1-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-AL137145.1-2:9	chr10	  6632912	  6635911	+	lnc-AL137145.1-2	lnc-AL137145.1-2:9	XLOC_008370	linc-ITIH2-10	NA	NA	NA	inter
CUST_1696_PI429285431	3.5146828	P	3.016539	A	1.41239517724319	0	lncRNA	1679-1_{1..423}	"transcript_id ""ENST00000514103.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514103.1"" | genecode_v17"	chr4	 11916291	 11916713	+	ENSG00000248262.1	ENST00000514103.1	RP11-1J7.1	RP11-1J7.1-001	NA	NA	NA	inter
CUST_10726_PI429285431	2.6216292	A	3.119552	A	0.708125610576337	0	lncRNA	12264-1_{1..298}	lnc-BMP7-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BMP7-2:2	chr20	 55861529	 55861826	-	lnc-BMP7-2	lnc-BMP7-2:2	XLOC_013812	linc-BMP7	NA	NA	NA	inter
CUST_42746_PI429285431	4.2244906	P	3.635396	P	1.50430238785468	0	lncRNA	45700-1_{1..69}	ENST00000365570 ncrna:snoRNA chromosome:GRCh37:4:83323791:83323859:-1 gene:ENSG00000202440 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365570 ncrna:snoRNA chromosome:GRCh37:4:83323791:83323859:-1 gene:ENSG00000202440 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	 83323791	 83323859	-	ENSG00000202440	ENST00000365570	NA	NA	NA	NA	NA	inter
CUST_43294_PI429285431	5.812733	P	5.8213406	P	0.994051429552686	0	lncRNA	48113-1_{1..443}	ENST00000598623 havana:sense_overlapping chromosome:GRCh37:2:105469743:105542510:1 gene:ENSG00000269707 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000598623 havana:sense_overlapping chromosome:GRCh37:2:105469743:105542510:1 gene:ENSG00000269707 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	chr2	105469743	105470185	+	ENSG00000269707	ENST00000598623	NA	NA	POU3F3	NA	chr2:105471969-105473471	inner
CUST_28825_PI429285431	4.757621	P	4.580541	P	1.13059325878877	0	lncRNA	30534-1_{1..496}	n326239|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000089729|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000089729|-1.1748600|-0.3389905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326239|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000089729|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000089729|-1.1748600|-0.3389905	chr1	212080693	212081188	-	NA	NA	NA	NA	INTS7	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-29.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70chr1:212113741-212209002"	NA	inter
CUST_31596_PI429285431	1.1215668	A	1.27018	A	0.902117212002663	0	lncRNA	33352-1_{1..1706}	n338103|AK097502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|491|NULL|-0.9867990|-0.3036213	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338103|AK097502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|491|NULL|-0.9867990|-0.3036213	chr1	100433822	100435527	-	NA	NA	NA	NA	SLC35A3	NA	chr1:100435540-100445528	inner
CUST_5397_PI429285431	10.210832	P	9.403906	P	1.74947979163331	0	lncRNA	5331-1_{1..342}	"transcript_id ""ENST00000563192.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000563192.1"" | genecode_v17"	chr16	  2204798	  2205139	-	ENSG00000260260.1	ENST00000563192.1	RP11-304L19.5	RP11-304L19.5-001	TRAF7	NA	chr16:2205799-2215359	inter
CUST_5665_PI429285431	0.9117323	A	1.0072898	A	0.935910514065012	0	lncRNA	5591-1_{1..2980}	"transcript_id ""ENST00000567109.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567109.1"" | genecode_v17"	chr16	 83831266	 83834245	+	ENSG00000260523.1	ENST00000567109.1	RP11-483P21.3	RP11-483P21.3-001	CDH13	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10chr16:83821266-83830215"	NA	inter
CUST_11450_PI429285431	6.0012455	P	6.501559	P	0.706953142416141	0	lncRNA	13017-1_{1..667}	lnc-DEFB104B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DEFB104B-1:2	chr8	  7334999	  7335665	-	lnc-DEFB104B-1	lnc-DEFB104B-1:2	XLOC_006991	linc-DEFB104B	DEFB106B	NA	chr8:7340026-7343909	inter
CUST_43383_PI429285431	1.5657948	A	0.9008107	A	1.58555079870523	0	lncRNA	48197-1_{1..1840}	"gi|224451045|ref|NR_027045.1| Homo sapiens chromosome 1 open reading frame 200 (C1orf200), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224451045|ref|NR_027045.1| Homo sapiens chromosome 1 open reading frame 200 (C1orf200), non-coding RNA"	Chr1	  9712668	  9714507	-	644997	NR_027045.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0010983	4.347417	P	5.6863894	P	0.395302120700026	0	lncRNA	THC2640107	NA	NA	NA	NA	XLOC_l2_002355	NA	NA	THC2640107	NA	"BROAD Institute lincRNA (XLOC_l2_002355), lincRNA [TCONS_l2_00004588]"	chr11:066178221-066178280	hs|11q13.2	Agilent_HUMAN_G3V2	THC2640107	THC2640107	chr11	 66178221	 66178280	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30147_PI429285431	2.0253205	A	2.1932127	A	0.890142243323005	0	lncRNA	31921-1_{1..359}	n334796|AJ240555|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245336|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245336|1.6997900|-0.2063648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334796|AJ240555|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245336|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245336|1.6997900|-0.2063648	chr14	106322299	106322657	-	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106839859	inter
CUST_4728_PI429285431	1.4084774	A	1.3929853	A	1.01079616796748	0	lncRNA	4673-1_{1..783}	"transcript_id ""ENST00000549877.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549877.1"" | genecode_v17"	chr14	 19901742	 19902524	+	ENSG00000215394.4	ENST00000549877.1	LINC00516	LINC00516-003	NA	NA	NA	inter
CUST_26130_PI429285431	6.278205	P	6.559263	P	0.822987258438351	0	lncRNA	27641-1_{1..3000}	lnc-ARC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARC-1:1	chr8	143763123	143766122	-	lnc-ARC-1	lnc-ARC-1:1	ENSG00000234616.3	JRK	PSCA	"hg19_refFlat_PSCA:range=chr8:143761957-1437635505'pad=0,hg19_refFlat_PSCA:range=chr8:143761957-1437635505'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30chr8:143753123-143764145"	NA	inter
CUST_40528_PI429285431	2.0663116	A	0.91403186	A	2.22264838925796	0	lncRNA	41290-1_{1..658}	n409636|NR_034020|lncRNA|Homosapiens||RefGeneNoncode|NR_034020||2.4965700|-0.3641117	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409636|NR_034020|lncRNA|Homosapiens||RefGeneNoncode|NR_034020||2.4965700|-0.3641117	chr8	 74153563	 74154220	-	NA	NA	NA	NA	NA	NA	NA	inner
LNCA_21_P0008970	0.9170035	A	0.9042404	A	1.00888595454307	0	lncRNA	TCONS_00024467	NA	NA	NA	NA	XLOC_011789	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011789), lincRNA [TCONS_00024467]"	chr16:74302896-74302955	hs|16q23.1	Agilent_HUMAN_G3V2	TCONS_00024467	TCONS_00024467	chr16	 74302896	 74302955	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5107_PI429285431	5.077127	P	5.241526	P	0.892300157704363	0	lncRNA	5047-1_{1..465}	"transcript_id ""ENST00000565295.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565295.1"" | genecode_v17"	chr15	 24792943	 24793407	+	ENSG00000259905.1	ENST00000565295.1	PWRN1	PWRN1-003	NA	NA	NA	inter
LNCA_21_P0002718	0.9162802	A	1.6796547	A	0.589116758995319	0	lncRNA	ENST00000492569	NA	AK092619	NA	Hs.638002	XLOC_003292	NA	ENST00000492569	THC2632715	NA	"BROAD Institute lincRNA (XLOC_003292), lincRNA [TCONS_00005471]"	chr3:153102782-153102723	hs|3q25.2	Agilent_HUMAN_G3V2	ENST00000492569	ENST00000492569	chr3	153102723	153102782	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8236_PI429285431	3.664402	P	3.9093876	P	0.843824218567027	0	lncRNA	9826-1_{1..656}	lnc-NEDD1-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NEDD1-4:5	chr12	 97954315	 97954970	+	lnc-NEDD1-4	lnc-NEDD1-4:5	ENSG00000255794	RMST	NA	NA	NA	inter
CUST_36400_PI429285431	3.6529255	P	3.5002527	P	1.11162701441142	0	lncRNA	37618-1_{1..606}	n344917|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_466|NULL|-1.3398900|-0.1398954	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344917|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_466|NULL|-1.3398900|-0.1398954	chr6	 86386799	 86387404	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49038_PI429285431	4.640169	P	3.8988295	P	1.67172726821758	0	lncRNA	52867-1_{1..777}	hg19_lincRNAsTranscripts_TCONS_l2_00021287 range=chr4:128018058-128273691 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021287 range=chr4:128018058-128273691 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	128018058	128018834	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004198	1.6512617	A	0.98242474	A	1.58979082834531	0	lncRNA	TCONS_00009836	NA	NA	NA	NA	XLOC_004252	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004252), lincRNA [TCONS_00009836]"	chr5:2069466-2069525	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00009836	TCONS_00009836	chr5	  2069466	  2069525	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46383_PI429285431	4.922771	P	5.1339297	P	0.863843157303355	0	lncRNA	50600-1_{1..1634}	"gi|387849297|ref|NR_049726.1| Homo sapiens T-cell leukemia/lymphoma 1A (TCL1A), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|387849297|ref|NR_049726.1| Homo sapiens T-cell leukemia/lymphoma 1A (TCL1A), transcript variant 3, non-coding RNA"	Chr14	 96176304	 96177937	-	8115	NR_049726.1	NA	NA	NA	NA	NA	inter
CUST_28225_PI429285431	3.5956411	P	3.3551564	P	1.18138950434939	0	lncRNA	29857-1_{1..530}	n325512|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000139382|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000139382|0.5183790|-0.1126191	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325512|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000139382|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000139382|0.5183790|-0.1126191	chr19	 54578216	 54578745	-	NA	NA	NA	NA	TARM1	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50chr19:54573201-54584634"	NA	inner
LNCA_21_P0000919	8.980965	P	8.973782	P	1.00499129139809	0	lncRNA	ENST00000435023	NA	BC039493	NA	Hs.637822	XLOC_000480	NA	ENST00000435023	NA	NA	"BROAD Institute lincRNA (XLOC_000480), lincRNA [TCONS_00000059]"	chr1:181144484-181144543	hs|1q25.3	Agilent_HUMAN_G3V2	ENST00000435023	ENST00000435023	chr1	181144484	181144543	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_846_PI429285431	3.4271176	P	3.715428	P	0.818860498707046	0	lncRNA	840-1_{1..351}	"transcript_id ""ENST00000417213.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417213.1"" | genecode_v17"	chr2	 38359779	 38360129	-	ENSG00000229160.1	ENST00000417213.1	AC009229.6	AC009229.6-001	NA	NA	NA	inter
CUST_12382_PI429285431	3.4923449	P	3.6499078	P	0.89653828678338	0	lncRNA	13995-1_{1..395}	lnc-ZNF536-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF536-2:1	chr19	 31715736	 31716130	+	lnc-ZNF536-2	lnc-ZNF536-2:1	XLOC_013036	linc-ZNF507-6	NA	NA	NA	inter
CUST_40214_PI429285431	2.8684292	A	3.2376044	P	0.774225000735297	0	lncRNA	41040-1_{1..3000}	n408042|NR_027822_6|lncRNA|Homosapiens||RefGeneNoncode|NR_027822_6||6.0445700|-0.2749678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408042|NR_027822_6|lncRNA|Homosapiens||RefGeneNoncode|NR_027822_6||6.0445700|-0.2749678	chr6	 30227338	 30230337	+	NA	NA	NA	NA	NA	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80"	NA	inter
CUST_15092_PI429285431	7.555895	P	7.7454214	P	0.876893535863533	0	lncRNA	16755-1_{1..340}	lnc-TMEM64-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM64-1:5	chr8	 91566579	 91566918	-	lnc-TMEM64-1	lnc-TMEM64-1:5	XLOC_007149	linc-CALB1-2	NA	NA	NA	inter
CUST_19775_PI429285431	1.452051	A	1.3015578	A	1.10994885454196	0	lncRNA	21433-1_{1..254}	lnc-RPRML-3:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPRML-3:12	chr17	 45098948	 45099201	-	lnc-RPRML-3	lnc-RPRML-3:12	ENSG00000262879.1	RP11-156P1.3	NA	NA	NA	inter
CUST_25268_PI429285431	1.2185913	A	0.9153689	A	1.23389736774895	0	lncRNA	26798-1_{1..263}	lnc-MPHOSPH8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MPHOSPH8-1:1	chr13	 20253668	 20253930	+	lnc-MPHOSPH8-1	lnc-MPHOSPH8-1:1	ENSG00000237644.1	PSPC1-AS1	PSPC1	NA	chr13:20248896-20263837	inter
CUST_12157_PI429285431	1.8219746	A	0.8987829	A	1.89630588765488	0	lncRNA	13756-2_{3001..6000}	lnc-TPM4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TPM4-2:2	chr19	 16138931	 16141930	+	lnc-TPM4-2	lnc-TPM4-2:2	XLOC_012983	linc-TPM4-2	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20"	NA	inter
CUST_43873_PI429285431	12.585995	P	12.630474	P	0.969639919469925	0	lncRNA	48592-2_{3001..4469}	"gi|299890876|ref|NR_033935.1| Homo sapiens dynactin 1 (DCTN1), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299890876|ref|NR_033935.1| Homo sapiens dynactin 1 (DCTN1), transcript variant 7, non-coding RNA"	Chr2	 74591281	 74592749	-	1639	NR_033935.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008347	2.5317926	A	0.8998893	A	3.0992159846948	0	lncRNA	TCONS_00022531	NA	NA	NA	NA	XLOC_010855	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010855), lincRNA [TCONS_00022531]"	chr14:66220657-66220716	hs|14q23.3	Agilent_HUMAN_G3V2	TCONS_00022531	TCONS_00022531	chr14	 66220657	 66220716	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51136_PI429285431	6.9559793	P	6.987786	P	0.97819452840368	0	lncRNA	54764-1_{1..682}	hg19_lincRNAsTranscripts_TCONS_l2_00008041 range=chr14:42066435-42074504 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008041 range=chr14:42066435-42074504 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr14	 42066435	 42067116	-	NA	NA	NA	NA	LRFN5	NA	chr14:42076764-42084504	inter
CUST_25065_PI429285431	4.9679956	P	5.07595	P	0.927902804706293	0	lncRNA	26603-1_{1..498}	lnc-RPS19BP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS19BP1-1:1	chr22	 39872463	 39872960	-	lnc-RPS19BP1-1	lnc-RPS19BP1-1:1	ENSG00000227188.1	RP5-1104E15.6	MGAT3	NA	chr22:39862463-39882827	inner
CUST_381_PI429285431	0.92319393	A	0.90447295	A	1.0130609532716	0	lncRNA	373-1_{1..442}	"transcript_id ""ENST00000420059.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420059.1"" | genecode_v17"	chr1	119870799	119871240	+	ENSG00000232650.1	ENST00000420059.1	RP5-834N19.1	RP5-834N19.1-002	NA	NA	NA	inter
CUST_22784_PI429285431	5.9164047	P	5.890401	P	1.01818781105111	0	lncRNA	24364-1_{1..758}	lnc-KIRREL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIRREL-1:1	chr1	157665755	157666512	+	lnc-KIRREL-1	lnc-KIRREL-1:1	ENSG00000227217.1	RP11-367J7.3	FCRL3	"hg19_refFlat_FCRL3:range=chr1:157648500-1576702795'pad=0,hg19_refFlat_FCRL3:range=chr1:157648500-1576702795'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20chr1:157655755-157670647"	NA	inner
CUST_44813_PI429285431	0.90413404	A	1.5017176	A	0.660859935303725	0	lncRNA	49347-1_{1..1230}	"gi|224028264|ref|NR_026969.1| Homo sapiens long intergenic non-protein coding RNA 326 (LINC00326), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224028264|ref|NR_026969.1| Homo sapiens long intergenic non-protein coding RNA 326 (LINC00326), non-coding RNA"	Chr6	133409219	133410448	+	285735	NR_026969.1	NA	NA	NA	NA	NA	inter
CUST_42069_PI429285431	4.934219	P	4.954933	P	0.98574473169911	0	lncRNA	43982-1_{1..63}	ENST00000408844 ncrna:miRNA chromosome:GRCh37:8:128972879:128972941:1 gene:ENSG00000221771 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408844 ncrna:miRNA chromosome:GRCh37:8:128972879:128972941:1 gene:ENSG00000221771 gene_biotype:miRNA transcript_biotype:miRNA	chr8	128972879	128972941	+	ENSG00000221771	ENST00000408844	NA	NA	NA	NA	NA	inter
CUST_48654_PI429285431	0.9055598	A	0.90437794	A	1.00081953856518	0	lncRNA	52500-1_{1..439}	hg19_lincRNAsTranscripts_TCONS_l2_00014691 range=chr2:92075522-92102148 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014691 range=chr2:92075522-92102148 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 92075522	 92075960	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37317_PI429285431	1.3933002	A	0.9117819	A	1.39621227471673	0	lncRNA	38424-1_{1..262}	n345761|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1310|NULL|-1.5491900|-0.2938526	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345761|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1310|NULL|-1.5491900|-0.2938526	chrX	 78400550	 78400811	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35771_PI429285431	2.475747	A	1.393998	A	2.11660051167976	0	lncRNA	37188-1_{1..535}	n344458|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_6|NULL|-1.5482300|-0.3603192	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344458|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_6|NULL|-1.5482300|-0.3603192	chr8	 90627188	 90627722	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28753_PI429285431	0.9246292	A	0.92079645	A	1.00266019190421	0	lncRNA	30456-1_{1..1715}	n326152|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096167|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096167|0.2753680|-0.3294053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326152|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096167|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096167|0.2753680|-0.3294053	chr1	241285753	241287467	-	NA	NA	NA	NA	RGS7	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60chr1:241275753-241297788"	NA	inner
CUST_30276_PI429285431	3.341163	P	3.9925718	P	0.63665830951501	0	lncRNA	32052-1_{1..485}	n335170|AY393509|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254150|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254150|-1.3021700|-0.2501300	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335170|AY393509|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254150|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254150|-1.3021700|-0.2501300	chr14	106322199	106322683	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9598_PI429285431	0.912901	A	1.2058964	A	0.816205648599715	0	lncRNA	11113-1_{1..401}	lnc-ENOX2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENOX2-1:2	chrX	130173687	130174087	-	lnc-ENOX2-1	lnc-ENOX2-1:2	XLOC_008236	linc-ENOX2	NA	NA	NA	inter
CUST_42308_PI429285431	10.273538	P	10.043181	P	1.17312520730717	0	lncRNA	44932-1_{1..131}	ENST00000384176 ncrna:snoRNA chromosome:GRCh37:15:65577799:65577929:-1 gene:ENSG00000206903 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384176 ncrna:snoRNA chromosome:GRCh37:15:65577799:65577929:-1 gene:ENSG00000206903 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 65577799	 65577929	-	ENSG00000206903	ENST00000384176	NA	NA	PARP16	NA	chr15:65567799-65579018	inner
CUST_42766_PI429285431	0.982838	A	0.89651626	A	1.06165994670528	0	lncRNA	45740-1_{1..127}	ENST00000363205 ncrna:snoRNA chromosome:GRCh37:8:130880836:130880962:-1 gene:ENSG00000200075 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363205 ncrna:snoRNA chromosome:GRCh37:8:130880836:130880962:-1 gene:ENSG00000200075 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	130880836	130880962	-	ENSG00000200075	ENST00000363205	NA	NA	FAM49B	NA	chr8:130870836-130890962	inter
CUST_34518_PI429285431	1.9634099	A	0.9224164	A	2.05764414513972	0	lncRNA	35982-1_{1..1309}	n341397|AF339799|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3866|NULL|-1.0105100|-0.2552488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341397|AF339799|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3866|NULL|-1.0105100|-0.2552488	chr13	 99229497	 99230805	+	NA	NA	NA	NA	STK24	NA	chr13:99219497-99229396	inter
CUST_28561_PI429285431	1.1598222	A	1.1215668	A	1.02687131644353	0	lncRNA	30238-1_{1..874}	n325915|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049339|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049339|-1.0516200|-0.4137835	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325915|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049339|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049339|-1.0516200|-0.4137835	chr10	 92204416	 92205289	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43074_PI429285431	0.901372	A	0.9020998	A	0.999495654706854	0	lncRNA	47170-1_{1..140}	ENST00000362443 ncrna:snRNA chromosome:GRCh37:9:127649689:127649828:-1 gene:ENSG00000199313 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362443 ncrna:snRNA chromosome:GRCh37:9:127649689:127649828:-1 gene:ENSG00000199313 gene_biotype:snRNA transcript_biotype:snRNA	chr9	127649689	127649828	-	ENSG00000199313	ENST00000362443	NA	NA	GOLGA1	NA	chr9:127640573-127659828	inner
CUST_38662_PI429285431	3.57219	P	3.2947354	P	1.21205452435084	0	lncRNA	39663-1_{1..2794}	n383936|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xzf.1||1.4873200|-0.1699331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n383936|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xzf.1||1.4873200|-0.1699331	chr20	 57090434	 57093227	+	NA	NA	NA	NA	APCDD1L	NA	chr20:57080434-57089949	inter
CUST_10030_PI429285431	0.9232136	A	0.9142351	A	1.0062428276869	0	lncRNA	11556-1_{1..242}	lnc-C15orf54-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf54-2:2	chr15	 39680836	 39681077	+	lnc-C15orf54-2	lnc-C15orf54-2:2	XLOC_011215	linc-THBS1-3	NA	NA	NA	inter
CUST_34399_PI429285431	1.3339181	A	0.9232422	A	1.32930844682109	0	lncRNA	35881-2_{3001..3122}	n341269|AL133090|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3737|NULL|-1.2026100|-0.3456197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341269|AL133090|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3737|NULL|-1.2026100|-0.3456197	chr7	 87832108	 87832229	+	NA	NA	NA	NA	ADAM22	NA	chr7:87819108-87832204	inner
CUST_13421_PI429285431	6.2391458	P	6.234025	P	1.00355577490379	0	lncRNA	15060-1_{1..3000}	lnc-C9orf50-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf50-2:1	chr9	132268465	132271464	-	lnc-C9orf50-2	lnc-C9orf50-2:1	XLOC_007868	linc-IER5L-2	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_SSH1:range=chr12:109185876-1092211815'pad=0,hg19_refFlat_SSH1:range=chr12:109185876-1092211815'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SSH1:range=chr12:109185876-1092512725'pad=0,hg19_refFlat_SSH1:range=chr12:109185876-1092512725'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10"	NA	inter
CUST_27837_PI429285431	0.8951617	A	0.89182943	A	1.00231242309104	0	lncRNA	29425-1_{1..729}	n325067|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078008|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078008|-1.3325900|-0.3837090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325067|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078008|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078008|-1.3325900|-0.3837090	chr20	 10681925	 10682653	-	NA	NA	NA	NA	NA	"hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00"	NA	inter
CUST_1452_PI429285431	4.969354	P	5.6089334	P	0.64190005957486	0	lncRNA	1441-1_{1..502}	"transcript_id ""ENST00000594843.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594843.1"" | genecode_v17"	chr3	125546100	125546601	-	ENSG00000241288.2	ENST00000594843.1	RP11-379B18.5	RP11-379B18.5-004	NA	NA	NA	inter
CUST_7138_PI429285431	0.91610646	A	0.9205846	A	0.99690080234365	0	lncRNA	7074-1_{1..269}	"transcript_id ""ENST00000453955.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000453955.1"" | genecode_v17"	chrY	  8572513	  8572781	+	ENSG00000232419.1	ENST00000453955.1	TTTY19	TTTY19-001	NA	NA	NA	inter
CUST_52159_PI429285431	2.858995	A	3.474918	P	0.652512299018767	0	lncRNA	55682-1_{1..648}	hg19_lincRNAsTranscripts_TCONS_l2_00017637 range=chr22:23734736-23735566 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017637 range=chr22:23734736-23735566 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 23734736	 23735383	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011902	0.9290626	A	0.91677	A	1.00855698450176	0	lncRNA	ENST00000416607	NA	NA	NA	NA	XLOC_l2_007880	NA	ENST00000416607	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007880), lincRNA [TCONS_l2_00014411]"	chr2:8029623-8029564	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000416607	ENST00000416607	chr2	  8029564	  8029623	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41905_PI429285431	0.92010784	A	0.9076344	A	1.00868341376879	0	lncRNA	43633-1_{1..72}	ENST00000583453 ncrna:miRNA chromosome:GRCh37:8:62627347:62627418:1 gene:ENSG00000264408 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583453 ncrna:miRNA chromosome:GRCh37:8:62627347:62627418:1 gene:ENSG00000264408 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 62627347	 62627418	+	ENSG00000264408	ENST00000583453	NA	NA	ASPH	NA	chr8:62617347-62627199	inter
CUST_17791_PI429285431	1.1012975	A	0.90351105	A	1.1469372401977	0	lncRNA	19523-1_{1..210}	lnc-ABI1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABI1-2:1	chr10	 26924798	 26925007	-	lnc-ABI1-2	lnc-ABI1-2:1	XLOC_008753	linc-ENKUR-4	NA	NA	NA	inter
CUST_23062_PI429285431	8.472966	P	8.497243	P	0.98331325801529	0	lncRNA	24633-1_{1..424}	lnc-RMI1-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RMI1-5:4	chr9	 86452323	 86452746	+	lnc-RMI1-5	lnc-RMI1-5:4	ENSG00000226877.1	RP11-575L7.2	KIF27	"hg19_refFlat_KIF27:range=chr9:86451916-865305065'pad=0,hg19_refFlat_KIF27:range=chr9:86451916-865305065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30chr9:86451613-86462498"	NA	inner
CUST_5081_PI429285431	3.9961543	P	4.3537617	P	0.780457836943899	0	lncRNA	5021-1_{1..370}	"transcript_id ""ENST00000418566.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418566.1"" | genecode_v17"	chr14	106360504	106360873	+	ENSG00000244620.1	ENST00000418566.1	AL122127.25	AL122127.25-002	NA	NA	NA	inter
CUST_27839_PI429285431	0.91194665	A	0.9009513	A	1.00765051261225	0	lncRNA	29427-1_{1..446}	n325069|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077972|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077972|-1.4391700|-0.3381697	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325069|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077972|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077972|-1.4391700|-0.3381697	chr20	 10108882	 10109327	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17981_PI429285431	1.3598998	A	0.9089091	A	1.36697864000168	0	lncRNA	19714-1_{1..620}	lnc-TMED5-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMED5-1:5	chr1	 93811281	 93811900	-	lnc-TMED5-1	lnc-TMED5-1:5	XLOC_000918	linc-TMED5	DR1	NA	chr1:93811478-93821384	inter
CUST_14450_PI429285431	6.49268	P	6.5410156	P	0.967051347775357	0	lncRNA	16113-1_{1..530}	lnc-ZRANB1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZRANB1-2:1	chr10	126922379	126922908	+	lnc-ZRANB1-2	lnc-ZRANB1-2:1	XLOC_008659	linc-C10orf137-3	NA	NA	NA	inter
CUST_17179_PI429285431	3.0254436	A	2.7885516	A	1.17845118577696	0	lncRNA	18890-1_{1..349}	lnc-CSMD1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CSMD1-1:7	chr8	  2562746	  2563094	-	lnc-CSMD1-1	lnc-CSMD1-1:7	XLOC_006980	linc-ERICH1-9	NA	NA	NA	inter
CUST_20829_PI429285431	6.991849	P	7.0839896	P	0.938129765208011	0	lncRNA	22460-1_{1..577}	lnc-RP11-625H11.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-625H11.1.1-2:1	chr15	 62982444	 62983020	-	lnc-RP11-625H11.1.1-2	lnc-RP11-625H11.1.1-2:1	ENSG00000259756.1	RP11-625H11.2	TLN2	NA	chr15:62972444-62992647	inner
CUST_21704_PI429285431	0.9156822	A	0.92316955	A	0.994823608386797	0	lncRNA	23315-1_{1..960}	lnc-AKIP1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AKIP1-2:2	chr11	  9086079	  9087038	+	lnc-AKIP1-2	lnc-AKIP1-2:2	ENSG00000253973.2	RP11-467K18.2	SCUBE2	NA	chr11:9076079-9096701	inner
LNCA_21_P0010228	4.5204887	P	5.1482754	P	0.647168502927347	0	lncRNA	ENST00000436878	XR_132676	XR_132676	NA	Hs.651529	XLOC_013900	NA	ENST00000436878	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652994 (LOC100652994), miscRNA [XR_132676]"	chr21:29475365-29475424	hs|21q21.3	Agilent_HUMAN_G3V2	ENST00000436878	ENST00000436878	chr21	 29475365	 29475424	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2581_PI429285431	0.91209763	A	1.2389622	A	0.797267314840824	0	lncRNA	2569-1_{1..484}	"transcript_id ""ENST00000424678.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424678.1"" | genecode_v17"	chr6	 94596618	 94597101	+	ENSG00000229600.1	ENST00000424678.1	RP11-524K14.1	RP11-524K14.1-001	NA	NA	NA	inter
CUST_21274_PI429285431	0.92074907	A	1.0804901	A	0.895185746220024	0	lncRNA	22899-1_{1..991}	lnc-NAV3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NAV3-1:1	chr12	 77965639	 77966629	+	lnc-NAV3-1	lnc-NAV3-1:1	ENSG00000231121.2	RP1-34H18.1	NA	NA	NA	inter
CUST_6424_PI429285431	3.10226	P	3.1082554	P	0.995852928343584	0	lncRNA	6363-1_{1..579}	"transcript_id ""ENST00000592931.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592931.1"" | genecode_v17"	chr19	 29000145	 29000723	+	ENSG00000267423.1	ENST00000592931.1	AC005616.2	AC005616.2-001	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70"	NA	inter
CUST_51857_PI429285431	10.245783	P	10.298262	P	0.964277974267538	0	lncRNA	55410-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00013179 range=chr19:50993628-51003656 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013179 range=chr19:50993628-51003656 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 50999628	 51002627	-	NA	NA	NA	NA	JOSD2	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10chr19:51009259-51013656"	NA	inter
CUST_12199_PI429285431	3.7228827	P	4.088275	P	0.776257765015956	0	lncRNA	13798-1_{1..833}	lnc-CDK12-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK12-1:5	chr17	 37723041	 37723873	+	lnc-CDK12-1	lnc-CDK12-1:5	XLOC_012192	linc-PPP1R1B	NA	NA	NA	inter
CUST_3776_PI429285431	1.7978212	A	2.5767033	A	0.582818226222891	0	lncRNA	3744-1_{1..291}	"transcript_id ""ENST00000458489.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458489.1"" | genecode_v17"	chr10	103464409	103464699	-	ENSG00000224817.1	ENST00000458489.1	RP11-190J1.3	RP11-190J1.3-001	FBXW4	NA	chr10:103454409-103454743	inter
CUST_21476_PI429285431	2.8397036	A	2.5999775	A	1.18076846769732	0	lncRNA	23094-1_{1..352}	lnc-MMP24-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MMP24-1:1	chr20	 33873273	 33873624	+	lnc-MMP24-1	lnc-MMP24-1:1	ENSG00000235214.1	FAM83C-AS1	MMP24	NA	chr20:33863273-33864804	inner
CUST_3157_PI429285431	0.9068789	A	0.9004643	A	1.00445616119305	0	lncRNA	3136-1_{1..566}	"transcript_id ""ENST00000522857.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522857.1"" | genecode_v17"	chr8	 64617314	 64617879	+	ENSG00000253762.1	ENST00000522857.1	RP11-579E24.2	RP11-579E24.2-001	NA	NA	NA	inter
CUST_33211_PI429285431	0.9514594	A	1.1776245	A	0.854904338238579	0	lncRNA	34802-1_{1..3000}	n339909|AL831865|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2358|NULL|-0.8279150|-0.3273928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339909|AL831865|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2358|NULL|-0.8279150|-0.3273928	chr18	 65149031	 65152030	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37474_PI429285431	1.0919837	A	0.91031224	A	1.13419716868807	0	lncRNA	38574-1_{1..517}	n345932|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1481|NULL|-1.2798000|-0.2374815	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345932|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1481|NULL|-1.2798000|-0.2374815	chr1	 40022746	 40023262	-	NA	NA	NA	NA	PABPC4	NA	chr1:40026485-40035335	inter
LNCA_21_P0001686	1.6788238	A	0.915624	A	1.69725084077423	0	lncRNA	TCONS_00002054	NA	NA	NA	NA	XLOC_000236	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000236), lincRNA [TCONS_00002054]"	chr1:67996007-67997795	hs|1p31.3	Agilent_HUMAN_G3V2	TCONS_00002054	TCONS_00002054	chr1	 67996007	 67997795	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18694_PI429285431	3.656868	P	3.7905939	P	0.911474436712563	0	lncRNA	20393-1_{1..720}	lnc-B3GNT7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-B3GNT7-1:1	chr2	232259492	232260211	+	lnc-B3GNT7-1	lnc-B3GNT7-1:1	ENSG00000224376	AC017104.6	B3GNT7	NA	chr2:232260335-232265875	inter
CUST_32241_PI429285431	0.92184174	A	0.93692094	A	0.989602328470936	0	lncRNA	33933-1_{1..1111}	n338815|BC015102|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1238|NULL|-1.1029700|-0.4250304	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338815|BC015102|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1238|NULL|-1.1029700|-0.4250304	chr2	 44622448	 44623558	+	NA	NA	NA	NA	CAMKMT	NA	chr2:44612448-44633532	inner
CUST_37488_PI429285431	3.2272606	P	3.433617	A	0.866723423743216	0	lncRNA	38589-1_{1..359}	n345949|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1498|NULL|-1.6087900|-0.0805262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345949|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1498|NULL|-1.6087900|-0.0805262	chr16	 30347621	 30347979	+	NA	NA	NA	NA	CD2BP2	NA	chr16:30347721-30364580	inter
CUST_24807_PI429285431	3.2808027	P	3.6634119	P	0.767049081423703	0	lncRNA	26349-2_{3001..3479}	lnc-ZNF862-1:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:17	chr7	149533896	149534374	+	lnc-ZNF862-1	lnc-ZNF862-1:17	ENSG00000197558.7	SSPO	ZNF862	NA	chr7:149535509-149541068	inner
CUST_34847_PI429285431	1.6425679	A	0.8998813	A	1.6732889534307	0	lncRNA	36273-2_{3001..3475}	n341749|AK127803|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4223|NULL|9.0907500|-0.0911894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341749|AK127803|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4223|NULL|9.0907500|-0.0911894	chr9	109628381	109628855	+	NA	NA	NA	NA	ZNF462	NA	chr9:109615381-109699383	inter
CUST_18424_PI429285431	2.8959696	P	2.0998876	A	1.7363791448347	0	lncRNA	20148-2_{3001..3453}	lnc-CCNJ-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCNJ-1:4	chr10	 97923102	 97923554	+	lnc-CCNJ-1	lnc-CCNJ-1:4	ENSG00000177853	ZNF518A	ZNF518A	NA	chr10:97910102-97923517	inner
CUST_35820_PI429285431	2.8833075	A	3.324395	P	0.7365791677483	0	lncRNA	37225-1_{1..1324}	n344495|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_43|NULL|-1.3242900|-0.2612919	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344495|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_43|NULL|-1.3242900|-0.2612919	chr13	 44841214	 44842537	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4828_PI429285431	1.9461659	A	1.8771329	A	1.0490133222812	0	lncRNA	4771-1_{1..566}	"transcript_id ""ENST00000435322.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435322.1"" | genecode_v17"	chr14	 53684609	 53685174	+	ENSG00000237356.1	ENST00000435322.1	AL163953.3	AL163953.3-003	NA	NA	NA	inter
CUST_40458_PI429285431	1.6346115	A	0.95466274	A	1.6020828532139	0	lncRNA	41231-1_{1..3000}	n409375|NR_033757|lncRNA|Homosapiens||RefGeneNoncode|NR_033757||0.2305920|-0.2286451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409375|NR_033757|lncRNA|Homosapiens||RefGeneNoncode|NR_033757||0.2305920|-0.2286451	chr1	 19923470	 19926469	+	NA	NA	NA	NA	C1orf15-NBL1	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40chr1:19923471-19966315"	NA	inter
CUST_41351_PI429285431	0.92403543	A	0.9537002	A	0.979647905782785	0	lncRNA	42422-1_{1..98}	ENST00000385045 ncrna:miRNA chromosome:GRCh37:3:160122376:160122473:1 gene:ENSG00000207779 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385045 ncrna:miRNA chromosome:GRCh37:3:160122376:160122473:1 gene:ENSG00000207779 gene_biotype:miRNA transcript_biotype:miRNA	chr3	160122376	160122473	+	ENSG00000207779	ENST00000385045	NA	NA	IFT80	NA	chr3:160112376-160117320	inner
CUST_1491_PI429285431	0.9007	A	0.90171915	A	0.999293828507467	0	lncRNA	1478-1_{1..1001}	"transcript_id ""ENST00000462931.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000462931.1"" | genecode_v17"	chr3	149101966	149102966	-	ENSG00000243885.1	ENST00000462931.1	RP11-278L15.2	RP11-278L15.2-001	TM4SF1	NA	chr3:149091966-149095568	inter
CUST_49127_PI429285431	0.92909014	A	0.95485526	A	0.982299506901756	0	lncRNA	52954-1_{1..744}	hg19_lincRNAsTranscripts_TCONS_l2_00020599 range=chr4:80131417-80132963 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020599 range=chr4:80131417-80132963 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 80131417	 80132160	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50431_PI429285431	5.010621	P	5.4450474	P	0.739987907361511	0	lncRNA	54135-1_{1..548}	hg19_lincRNAsTranscripts_TCONS_l2_00030473 range=chrX:40691123-40691926 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030473 range=chrX:40691123-40691926 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 40691123	 40691670	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38584_PI429285431	4.1931725	P	4.2916207	P	0.934037125829458	0	lncRNA	39595-2_{3001..3706}	n383621|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002rrs.1||-0.4391730|-0.3371892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n383621|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002rrs.1||-0.4391730|-0.3371892	chr2	 39744286	 39744991	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90"	NA	inter
CUST_15393_PI429285431	0.9227103	A	1.1461964	A	0.856493320275584	0	lncRNA	17078-1_{1..718}	lnc-ZNF599-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF599-3:3	chr19	 35341688	 35342405	-	lnc-ZNF599-3	lnc-ZNF599-3:3	XLOC_013308	linc-ZNF599-3	NA	NA	NA	inter
LNCA_21_P0002317	0.92779464	A	0.9227865	A	1.00347741033189	0	lncRNA	TCONS_00003940	NA	NA	NA	NA	XLOC_001756	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001756), lincRNA [TCONS_00003940]"	chr2:173117217-173117276	hs|2q31.1	Agilent_HUMAN_G3V2	TCONS_00003940	TCONS_00003940	chr2	173117217	173117276	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8228_PI429285431	3.8803642	P	2.9103258	A	1.95889273403743	0	lncRNA	9819-1_{1..937}	lnc-ZAP70-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZAP70-1:1	chr2	 98375474	 98376410	+	lnc-ZAP70-1	lnc-ZAP70-1:1	ENSG00000245679	ENST00000499393	TMEM131	"hg19_refFlat_TMEM131:range=chr2:98373562-986121255'pad=0,hg19_refFlat_TMEM131:range=chr2:98373562-986121255'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50chr2:98372799-98385517"	NA	inner
CUST_31251_PI429285431	0.91884226	A	0.90670943	A	1.00844529892534	0	lncRNA	33042-1_{1..2442}	n337706|AK097601|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|88|NULL|-0.6419710|-0.1805196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337706|AK097601|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|88|NULL|-0.6419710|-0.1805196	chr15	 40537125	 40539566	+	NA	NA	NA	NA	PAK6	NA	chr15:40527125-40549567	inner
CUST_27765_PI429285431	0.8955413	A	0.8979497	A	0.998332016962853	0	lncRNA	29350-1_{1..411}	n324985|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079368|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079368|-0.7193060|-0.3104985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324985|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079368|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079368|-0.7193060|-0.3104985	chr20	 42510830	 42511240	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32355_PI429285431	3.4297118	P	3.6159158	P	0.878915271725543	0	lncRNA	34034-1_{1..2272}	n338939|AK123095|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1366|NULL|-1.0003200|-0.3157045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338939|AK123095|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1366|NULL|-1.0003200|-0.3157045	chr2	112945940	112948211	+	NA	NA	NA	NA	FBLN7	NA	chr2:112935940-112945791	inter
CUST_35566_PI429285431	5.29906	P	5.8026896	P	0.70533004464359	0	lncRNA	36980-1_{1..819}	n342696|AJ406949|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5198|NULL|1.5624200|-0.1884013	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342696|AJ406949|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5198|NULL|1.5624200|-0.1884013	chr17	 39411809	 39412627	+	NA	NA	NA	NA	KRTAP9-6	NA	chr17:39421630-39422112	inner
CUST_15527_PI429285431	6.7582297	P	7.259145	P	0.706658308326258	0	lncRNA	17212-2_{3001..3769}	lnc-C10orf11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf11-1:1	chr10	 77193237	 77194005	+	lnc-C10orf11-1	lnc-C10orf11-1:1	XLOC_008522	linc-C10orf11-1	NA	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.80"	NA	inter
CUST_46193_PI429285431	4.7601366	P	4.8475666	P	0.941197895603931	0	lncRNA	50439-1_{1..690}	"gi|347582640|ref|NR_045181.1| Homo sapiens SPG20 opposite strand (SPG20OS), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|347582640|ref|NR_045181.1| Homo sapiens SPG20 opposite strand (SPG20OS), transcript variant 2, non-coding RNA"	Chr13	 36920568	 36921257	+	100507135	NR_045181.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001393	0.9261698	A	0.9177434	A	1.0058578257545	0	lncRNA	TCONS_00001212	NA	NA	NA	NA	XLOC_000478	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000478), lincRNA [TCONS_00001212]"	chr1:180869815-180869874	hs|1q25.3	Agilent_HUMAN_G3V2	TCONS_00001212	TCONS_00001212	chr1	180869815	180869874	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24787_PI429285431	6.639346	P	6.762842	P	0.91796051230012	0	lncRNA	26330-1_{1..644}	lnc-GGCT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GGCT-1:1	chr7	 30634327	 30634970	-	lnc-GGCT-1	lnc-GGCT-1:1	ENSG00000196295.5	AC005154.6	GARS	NA	chr7:30634181-30644425	inner
CUST_17328_PI429285431	6.4527245	P	6.140548	P	1.24157937764877	0	lncRNA	19046-1_{1..236}	lnc-ATP6AP1L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP6AP1L-2:1	chr5	 82026677	 82026912	+	lnc-ATP6AP1L-2	lnc-ATP6AP1L-2:1	XLOC_004446	linc-XRCC4-2	NA	NA	NA	inter
LNCA_21_P0001077	11.911522	P	12.087425	P	0.885213280138414	0	lncRNA	TCONS_00000421	NA	NA	NA	NA	XLOC_000624	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000624), lincRNA [TCONS_00000421]"	chr1:234791927-234816563	hs|1q42.3	Agilent_HUMAN_G3V2	TCONS_00000421	TCONS_00000421	chr1	234791927	234816563	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46841_PI429285431	11.168833	P	11.71702	P	0.683879002819989	0	lncRNA	50978-1_{1..1848}	"gi|260166682|ref|NR_028581.1| Homo sapiens glucose 6 phosphatase, catalytic, 3 (G6PC3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|260166682|ref|NR_028581.1| Homo sapiens glucose 6 phosphatase, catalytic, 3 (G6PC3), transcript variant 3, non-coding RNA"	Chr17	 42148098	 42149945	+	92579	NR_028581.1	NA	NA	NA	NA	NA	inter
CUST_3298_PI429285431	2.2812474	A	2.379635	P	0.934076360620614	0	lncRNA	3276-1_{1..785}	"transcript_id ""ENST00000521991.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521991.1"" | genecode_v17"	chr8	126535017	126535801	+	ENSG00000253111.1	ENST00000521991.1	RP11-136O12.2	RP11-136O12.2-002	NA	NA	NA	inter
CUST_6362_PI429285431	7.009182	P	7.3725543	P	0.777345409254822	0	lncRNA	6287-1_{1..367}	"transcript_id ""ENST00000587693.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587693.1"" | genecode_v17"	chr19	 16214571	 16214937	-	ENSG00000267373.1	ENST00000587693.1	CTD-2231E14.5	CTD-2231E14.5-001	TPM4	"hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00chr19:16204571-16213813"	NA	inter
CUST_46521_PI429285431	3.207471	P	3.3878486	P	0.882471994570314	0	lncRNA	50712-1_{1..3000}	"gi|357430767|ref|NR_045529.1| Homo sapiens FLJ00317 protein (LOC390660), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|357430767|ref|NR_045529.1| Homo sapiens FLJ00317 protein (LOC390660), non-coding RNA"	Chr15	 82585621	 82588620	+	390660	NR_045529.1	NA	NA	NA	NA	NA	inter
CUST_23786_PI429285431	3.02068	P	3.031	A	0.992872244900266	0	lncRNA	25352-1_{1..953}	lnc-KIDINS220-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIDINS220-2:6	chr2	  8818108	  8819060	-	lnc-KIDINS220-2	lnc-KIDINS220-2:6	ENSG00000235092.1	AC011747.7	ID2	NA	chr2:8822113-8824583	inter
CUST_36264_PI429285431	0.90305686	A	0.899978	A	1.00213638194721	0	lncRNA	37502-1_{1..352}	n344795|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_344|NULL|-1.4319200|-0.6289561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344795|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_344|NULL|-1.4319200|-0.6289561	chr14	 48713836	 48714187	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31086_PI429285431	3.6426444	P	4.045268	P	0.756481339332094	0	lncRNA	32877-1_{1..250}	n337365|DQ645738|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000392999|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000392999|-1.2526200|-0.2499688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337365|DQ645738|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000392999|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000392999|-1.2526200|-0.2499688	chr21	 41014312	 41014561	+	NA	NA	NA	NA	B3GALT5	NA	chr21:41029254-41034815	inner
CUST_6398_PI429285431	7.2077036	P	7.6388764	P	0.741658628820418	0	lncRNA	6331-1_{1..510}	"transcript_id ""ENST00000600896.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600896.1"" | genecode_v17"	chr19	 23251275	 23251784	-	ENSG00000269543.1	ENST00000600896.1	CTD-2291D10.3	CTD-2291D10.3-001	ZNF730	NA	chr19:23248781-23264244	inter
LNCA_21_P0014123	0.9184597	A	0.9060162	A	1.00866248095404	0	lncRNA	XR_108502	XR_108502	XR_108502	NA	Hs.712261	FLJ30375	uncharacterized LOC440982	NA	THC2623048	NA	"PREDICTED: Homo sapiens hypothetical LOC440982 (FLJ30375), miscRNA [XR_108502]"	chr3:147139908-147139967	hs|3q24	Agilent_HUMAN_G3V2	XR_108502	XR_108502	chr3	147139908	147139967	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3399468	15.591801	P	15.311371	P	1.2145568331095	0	lncRNA	XR_132623	XR_132623	XR_132623	   728054	Hs.661255	LOC728054	uncharacterized LOC728054	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC728054 (LOC728054), miscRNA [XR_132623]"	chr16:90235435-90235494	hs|16q24.3	Agilent_HUMAN_G3V2	XR_132623	XR_132623	chr16	 90235435	 90235494	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43926_PI429285431	3.0588255	A	4.543783	P	0.357259059187415	0	lncRNA	48637-1_{1..2810}	"gi|260763918|ref|NR_029193.1| Homo sapiens SH3RF3 antisense RNA 1 (SH3RF3-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|260763918|ref|NR_029193.1| Homo sapiens SH3RF3 antisense RNA 1 (SH3RF3-AS1), non-coding RNA"	Chr2	109743783	109746592	-	100287216	NR_029193.1	NA	NA	NA	"hg19_refFlat_SH3RF3:range=chr2:109745997-1102592485'pad=0,hg19_refFlat_SH3RF3:range=chr2:109745997-1102592485'pad=0 3'pad=0 strand=+ repeatMasking=none,-112.50"	NA	inter
CUST_23934_PI429285431	8.45561	P	8.135724	P	1.24823191124353	0	lncRNA	25491-1_{1..394}	lnc-OPA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OPA1-1:1	chr3	193272559	193272952	+	lnc-OPA1-1	lnc-OPA1-1:1	ENSG00000225473.1	ATP13A4-AS1	ATP13A4	NA	chr3:193262559-193272696	inner
CUST_19038_PI429285431	0.89763653	A	0.89369047	A	1.00273894443665	0	lncRNA	20728-1_{1..2796}	lnc-C1QTNF9B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C1QTNF9B-1:1	chr13	 24519889	 24522684	-	lnc-C1QTNF9B-1	lnc-C1QTNF9B-1:1	ENSG00000196593	RP11-45B20.4	NA	NA	NA	inter
CUST_42718_PI429285431	7.6827097	P	8.414248	P	0.602261399116785	0	lncRNA	45652-1_{1..140}	ENST00000384366 ncrna:snoRNA chromosome:GRCh37:7:88078407:88078546:-1 gene:ENSG00000207094 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384366 ncrna:snoRNA chromosome:GRCh37:7:88078407:88078546:-1 gene:ENSG00000207094 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 88078407	 88078546	-	ENSG00000207094	ENST00000384366	NA	NA	NA	NA	NA	inter
CUST_10833_PI429285431	2.1484716	A	1.2874372	A	1.8163401442188	0	lncRNA	12369-1_{1..1095}	lnc-NAV3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAV3-1:2	chr12	 77965639	 77966733	+	lnc-NAV3-1	lnc-NAV3-1:2	XLOC_009813	linc-NAV3-1	NA	NA	NA	inter
CUST_12166_PI429285431	1.3722174	A	0.8971178	A	1.39001417957708	0	lncRNA	13765-1_{1..930}	lnc-AKR1E2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AKR1E2-4:1	chr10	  4378556	  4379485	+	lnc-AKR1E2-4	lnc-AKR1E2-4:1	XLOC_008359	linc-AKR1E2-4	NA	NA	NA	inter
CUST_32513_PI429285431	1.4813656	A	1.600568	A	0.920696520876792	0	lncRNA	34180-1_{1..2937}	n339117|AK091534|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1547|NULL|-1.2586300|-0.3524138	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339117|AK091534|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1547|NULL|-1.2586300|-0.3524138	chr2	208467341	208470277	+	NA	NA	NA	NA	CREB1	NA	chr2:208457341-208470284	inner
CUST_36784_PI429285431	0.8904919	A	0.88864523	A	1.00128083367163	0	lncRNA	37956-1_{1..539}	n345263|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_812|NULL|-1.2950000|-0.3650416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345263|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_812|NULL|-1.2950000|-0.3650416	chr14	 61766840	 61767378	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36015_PI429285431	0.8995336	A	1.1468608	A	0.842455740761942	0	lncRNA	37348-1_{1..3000}	n344626|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_174|NULL|-1.5760500|-0.3682952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344626|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_174|NULL|-1.5760500|-0.3682952	chr3	176004973	176007972	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37745_PI429285431	3.489708	P	2.7938104	A	1.61989196605213	0	lncRNA	38838-2_{3001..4495}	n346247|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1797|NULL|-1.2351000|-0.2173654	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n346247|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1797|NULL|-1.2351000|-0.2173654	chr15	102145835	102147329	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20498_PI429285431	0.9091257	A	0.9135379	A	0.996946367857724	0	lncRNA	22140-1_{1..302}	lnc-DNAJC25-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DNAJC25-1:1	chr9	114337609	114337910	+	lnc-DNAJC25-1	lnc-DNAJC25-1:1	ENSG00000224644.1	RP11-16L21.7	ZNF483	NA	chr9:114327609-114340124	inner
CUST_46017_PI429285431	4.914989	P	4.9108524	P	1.00287138718484	0	lncRNA	50300-1_{1..2104}	"gi|164663799|ref|NR_004854.1| Homo sapiens antagonist of mitotic exit network 1 homolog (S. cerevisiae) (AMN1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|164663799|ref|NR_004854.1| Homo sapiens antagonist of mitotic exit network 1 homolog (S. cerevisiae) (AMN1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_004854.1	NA	NA	NA	NA	NA	Unknown
CUST_32800_PI429285431	2.6449647	A	3.0583029	A	0.750883918844166	0	lncRNA	34435-1_{1..216}	n339445|U03237|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1882|NULL|-0.9963380|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339445|U03237|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1882|NULL|-0.9963380|-1.0000000	chr21	 26744140	 26744355	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7201_PI429285431	1.3186444	A	1.4472373	A	0.914723169868359	0	lncRNA	7566-1_{1..223}	"transcript_id ""ENST00000516786.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516786.1"" | genecode_v17"	chr4	 42894413	 42894635	+	ENSG00000252595.1	ENST00000516786.1	RN7SKP82	RN7SKP82-201	GRXCR1	NA	chr4:42895283-42904635	inter
CUST_50179_PI429285431	7.8119035	P	7.7695885	P	1.02976489916031	0	lncRNA	53905-1_{1..245}	hg19_lincRNAsTranscripts_TCONS_l2_00029249 range=chr9:34665254-34665737 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029249 range=chr9:34665254-34665737 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 34665254	 34665498	-	NA	NA	NA	NA	IL11RA	NA	chr9:34655254-34661884	inter
CUST_16840_PI429285431	0.8964436	A	1.3230689	A	0.744000089502093	0	lncRNA	18548-1_{1..256}	lnc-CTD-2203A3.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2203A3.1.1-2:1	chr5	 51616252	 51616507	+	lnc-CTD-2203A3.1.1-2	lnc-CTD-2203A3.1.1-2:1	XLOC_004381	linc-PELO-1	NA	NA	NA	inter
CUST_2114_PI429285431	1.0543531	A	0.91034603	A	1.10496989974751	0	lncRNA	2105-1_{1..565}	"transcript_id ""ENST00000511029.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511029.1"" | genecode_v17"	chr5	 25404842	 25405406	-	ENSG00000248605.1	ENST00000511029.1	CTD-2306M5.1	CTD-2306M5.1-001	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10"	NA	inter
CUST_292_PI429201921	1.2311502	A	1.4441367	A	0.86274941767129	0	lncRNA	204-3_{6001..7105}	TC08002200.hg.1	TCONS_l2_00028534-XLOC_l2_014420 // Broad TUCP // linc-DEFB105B-4 chr8:-:7847937-7855043 // chr8 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr8:-:7847937-7855043	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00028534-XLOC_l2_014420	linc-DEFB105B-4	chr8	  7847937	  7855043	-	NA	NA	NA	NA	SCMH1	NA	chr1:41698045-41707815	Unknown
CUST_33922_PI429285431	2.5283175	A	1.6454425	A	1.84404645445327	0	lncRNA	35463-1_{1..1807}	n340719|BC038442|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3182|NULL|-0.6236380|-0.2466294	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340719|BC038442|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3182|NULL|-0.6236380|-0.2466294	chr17	 45976150	 45977956	-	NA	NA	NA	NA	SP2	"hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30chr17:45973516-46005938"	NA	inner
CUST_36066_PI429285431	1.808458	A	1.5725725	A	1.17762932292008	0	lncRNA	37376-1_{1..3000}	n344659|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_208|NULL|-1.3129200|-0.4214645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n344659|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_208|NULL|-1.3129200|-0.4214645	chr1	 23607825	 23610824	-	NA	NA	NA	NA	HNRNPR	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20chr1:23636276-23646128"	NA	inter
CUST_41391_PI429285431	3.618538	P	3.4195411	P	1.14789994729515	0	lncRNA	42501-1_{1..84}	ENST00000584881 ncrna:miRNA chromosome:GRCh37:14:101280828:101280911:1 gene:ENSG00000266461 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584881 ncrna:miRNA chromosome:GRCh37:14:101280828:101280911:1 gene:ENSG00000266461 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101280828	101280911	+	ENSG00000266461	ENST00000584881	NA	NA	NA	NA	NA	inter
LNCA_21_P0002377	0.91397077	A	0.9063455	A	1.00529942695129	0	lncRNA	AK096937	NA	AK096937	NA	Hs.729906	LOC285191	uncharacterized LOC285191	ENST00000407635	THC2622724	NA	"BROAD Institute lincRNA (XLOC_001920), lincRNA [TCONS_00004072]"	chr2:241626448-241626507	hs|2q37.3	Agilent_HUMAN_G3V2	AK096937	AK096937	chr2	241626448	241626507	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003791	0.914446	A	0.9020288	A	1.00864409343575	0	lncRNA	TCONS_00008637	NA	NA	NA	NA	XLOC_004142	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004142), lincRNA [TCONS_00008637]"	chr4:162164148-162164089	hs|4q32.2	Agilent_HUMAN_G3V2	TCONS_00008637	TCONS_00008637	chr4	162164089	162164148	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18200_PI429285431	7.5281467	P	7.2582383	P	1.20573127063086	0	lncRNA	19935-1_{1..1666}	lnc-RAB23-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAB23-4:4	chr6	 58287599	 58289264	-	lnc-RAB23-4	lnc-RAB23-4:4	ENSG00000215190	GUSBP4	NA	NA	NA	inter
CUST_5890_PI429285431	4.8843775	P	4.068597	P	1.76025019206736	0	lncRNA	5821-1_{1..455}	"transcript_id ""ENST00000514468.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514468.1"" | genecode_v17"	chr17	 48292055	 48292509	+	ENSG00000251085.1	ENST00000514468.1	RP11-893F2.6	RP11-893F2.6-001	NA	NA	NA	inter
CUST_14098_PI429285431	4.14179	P	4.4799194	P	0.791066344695743	0	lncRNA	15744-1_{1..663}	lnc-RP11-201M22.1.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-201M22.1.1-2:3	chr11	 91589502	 91590164	+	lnc-RP11-201M22.1.1-2	lnc-RP11-201M22.1.1-2:3	XLOC_009249	linc-FAT3-2	NA	NA	NA	inter
CUST_23777_PI429285431	7.6754904	P	7.753044	P	0.94766325205637	0	lncRNA	25341-1_{1..702}	lnc-CYP27B1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYP27B1-1:1	chr12	 58162663	 58163364	-	lnc-CYP27B1-1	lnc-CYP27B1-1:1	ENSG00000257152.1	RP11-571M6.13	METTL1	NA	chr12:58162351-58165914	inner
CUST_50464_PI429285431	5.8100424	P	5.863915	P	0.963346960496759	0	lncRNA	54167-1_{1..563}	hg19_lincRNAsTranscripts_TCONS_l2_00030260 range=chrX:73327062-73327716 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030260 range=chrX:73327062-73327716 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 73327062	 73327624	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8749_PI429285431	9.340252	P	9.619522	P	0.824007857666601	0	lncRNA	10291-1_{1..1561}	lnc-TAF12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TAF12-2:1	chr1	 28835913	 28837473	-	lnc-TAF12-2	lnc-TAF12-2:1	ENSG00000245178	AL513497.1	RCC1	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40chr1:28832455-28847109"	NA	inter
CUST_40152_PI429285431	5.7311153	P	5.424259	P	1.23700925993426	0	lncRNA	40990-1_{1..1886}	n407822|NR_027363|lncRNA|Homosapiens||RefGeneNoncode|NR_027363||1.3110900|-0.2368975	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407822|NR_027363|lncRNA|Homosapiens||RefGeneNoncode|NR_027363||1.3110900|-0.2368975	chr12	  2986364	  2988249	+	NA	NA	NA	NA	TULP3	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30chr12:3000033-3008626"	NA	inner
CUST_33947_PI429285431	4.2006946	P	4.4136643	P	0.86275946433687	0	lncRNA	35487-1_{1..2452}	n340747|AK093208|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3210|NULL|-1.0870600|-0.2577038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340747|AK093208|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3210|NULL|-1.0870600|-0.2577038	chr5	173639458	173641909	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47591_PI429285431	10.419781	P	10.55678	P	0.909408882154718	0	lncRNA	51594-1_{1..2873}	"gi|403310710|ref|NR_073148.1| Homo sapiens trophinin (TRO), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|403310710|ref|NR_073148.1| Homo sapiens trophinin (TRO), transcript variant 9, non-coding RNA"	ChrX	 54946996	 54949868	+	7216	NR_073148.1	NA	NA	NA	NA	NA	inter
CUST_44252_PI429285431	4.4462194	P	3.591986	P	1.80779789638723	0	lncRNA	48897-2_{3001..4644}	"gi|388490185|ref|NR_049770.1| Homo sapiens armadillo repeat containing 8 (ARMC8), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388490185|ref|NR_049770.1| Homo sapiens armadillo repeat containing 8 (ARMC8), transcript variant 6, non-coding RNA"	Chr3	137909115	137910758	+	25852	NR_049770.1	NA	NA	NA	NA	NA	inter
CUST_38444_PI429285431	3.8254008	P	4.1249933	P	0.812481855522752	0	lncRNA	39468-1_{1..3000}	n382691|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bkc.3||1.7051100|-0.1145597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382691|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bkc.3||1.7051100|-0.1145597	chr15	 84868725	 84871724	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24861_PI429285431	2.6028397	A	3.4076564	P	0.572434805741304	0	lncRNA	26401-1_{1..460}	lnc-LRRC26-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC26-1:1	chr9	140066339	140066798	-	lnc-LRRC26-1	lnc-LRRC26-1:1	ENSG00000261793.1	RP11-350O14.18	GRIN1	NA	chr9:140056339-140063214	inter
CUST_10599_PI429285431	1.8612003	A	1.7095817	A	1.11081502773711	0	lncRNA	12128-1_{1..3000}	lnc-MBP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBP-2:1	chr18	 74517679	 74520678	-	lnc-MBP-2	lnc-MBP-2:1	XLOC_012894	linc-ZNF516-3	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.71;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.82;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
CUST_28134_PI429285431	0.9079125	A	1.0196439	A	0.925476716636598	0	lncRNA	29760-1_{1..637}	n325411|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323742|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323742|0.5002090|-0.3158233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325411|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323742|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323742|0.5002090|-0.3158233	chr2	 16247178	 16247814	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-28.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60"	NA	inter
CUST_50047_PI429285431	5.6464243	P	5.907688	P	0.834356761058772	0	lncRNA	53783-1_{1..360}	hg19_lincRNAsTranscripts_TCONS_l2_00027749 range=chr8:49293333-49296676 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027749 range=chr8:49293333-49296676 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 49293333	 49293692	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6917_PI429285431	0.91875654	A	0.90847105	A	1.00715483277241	0	lncRNA	6869-1_{1..1496}	"transcript_id ""ENST00000338526.6"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000338526.6"" | genecode_v17"	chr22	 17154451	 17155946	-	ENSG00000189295.8	ENST00000338526.6	ANKRD62P1-PARP4P3	ANKRD62P1-PARP4P3-201	NA	NA	NA	inter
CUST_17735_PI429285431	0.9259986	A	1.1268941	A	0.870010368653341	0	lncRNA	19467-1_{1..503}	lnc-GLRB-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLRB-4:2	chr4	157564606	157565108	+	lnc-GLRB-4	lnc-GLRB-4:2	XLOC_003756	linc-GLRB-2	NA	NA	NA	inter
CUST_6003_PI429285431	3.5284204	P	3.5012538	P	1.0190088632545	0	lncRNA	5928-1_{1..324}	"transcript_id ""ENST00000570408.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000570408.1"" | genecode_v17"	chr17	 77821857	 77822180	-	ENSG00000262343.1	ENST00000570408.1	RP11-353N14.3	RP11-353N14.3-001	CBX4	NA	chr17:77811857-77813213	inter
CUST_11842_PI429285431	1.1420796	A	0.91447026	A	1.17089307814859	0	lncRNA	13419-1_{1..627}	lnc-KLHL31-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL31-1:4	chr6	 53481684	 53482310	-	lnc-KLHL31-1	lnc-KLHL31-1:4	XLOC_005747	linc-GCLC	NA	NA	NA	inter
CUST_22339_PI429285431	2.2584949	A	1.9117193	A	1.27171518594669	0	lncRNA	23933-1_{1..590}	lnc-CXXC11-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CXXC11-2:2	chr2	242913831	242914420	+	lnc-CXXC11-2	lnc-CXXC11-2:2	ENSG00000233806.2	AC131097.3	NA	NA	NA	inter
CUST_48623_PI429285431	17.086988	P	17.070572	P	1.01144368781261	0	lncRNA	52470-1_{1..696}	hg19_lincRNAsTranscripts_TCONS_l2_00013742 range=chr2:85142960-85143829 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013742 range=chr2:85142960-85143829 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 85142960	 85143655	+	NA	NA	NA	NA	TMSB10	NA	chr2:85132960-85133799	inter
LNCA_21_P0013882	5.4099865	P	5.3425407	P	1.04785987103114	0	lncRNA	TCONS_l2_00030903	NA	NA	NA	NA	XLOC_l2_015894	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015894), lincRNA [TCONS_l2_00030903]"	chrY:16020161-16021154	hs|Yq11.221	Agilent_HUMAN_G3V2	TCONS_l2_00030903	TCONS_l2_00030903	chrY	 16020161	 16021154	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44918_PI429285431	0.9192022	A	0.9142112	A	1.00346548854651	0	lncRNA	49434-2_{3001..4869}	"gi|296040456|ref|NR_033664.1| Homo sapiens NPSR1 antisense RNA 1 (NPSR1-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|296040456|ref|NR_033664.1| Homo sapiens NPSR1 antisense RNA 1 (NPSR1-AS1), transcript variant 1, non-coding RNA"	Chr7	 34389124	 34390992	-	404744	NR_033664.1	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40"	NA	inter
CUST_39590_PI429285431	0.9294323	A	1.0197772	A	0.939298167679874	0	lncRNA	40533-1_{1..1062}	n387592|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jdx.1||-1.3265000|-0.3575729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387592|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jdx.1||-1.3265000|-0.3575729	chr6	  1223622	  1224683	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5685_PI429285431	3.2104857	P	3.782761	P	0.672555252722401	0	lncRNA	5609-1_{1..555}	"transcript_id ""ENST00000565824.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565824.1"" | genecode_v17"	chr16	 87526880	 87527434	+	ENSG00000260750.1	ENST00000565824.1	RP11-482M8.1	RP11-482M8.1-001	ZCCHC14	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00chr16:87516880-87525460"	NA	inter
CUST_23206_PI429285431	1.1009872	A	1.621056	A	0.697338577333356	0	lncRNA	24778-1_{1..525}	lnc-SLCO1A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLCO1A2-1:1	chr12	 20522775	 20523299	-	lnc-SLCO1A2-1	lnc-SLCO1A2-1:1	ENSG00000256879.1	RP11-284H19.1	PDE3A	"hg19_refFlat_PDE3A:range=chr12:20522219-208332055'pad=0,hg19_refFlat_PDE3A:range=chr12:20522219-208332055'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.80chr12:20522197-20533196"	NA	inner
CUST_46490_PI429285431	1.9279443	A	1.835827	A	1.06593339950085	0	lncRNA	50684-1_{1..3000}	"gi|338827612|ref|NR_040052.1| Homo sapiens IQCH antisense RNA 1 (IQCH-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|338827612|ref|NR_040052.1| Homo sapiens IQCH antisense RNA 1 (IQCH-AS1), transcript variant 2, non-coding RNA"	Chr15	 67695949	 67698948	-	100506686	NR_040052.1	NA	NA	NA	"hg19_refFlat_C15orf61:range=chr15:67813587-678188835'pad=0,hg19_refFlat_C15orf61:range=chr15:67813587-678188835'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.80;hg19_refFlat_IQCH:range=chr15:67547235-677930845'pad=0,hg19_refFlat_IQCH:range=chr15:67547235-677930845'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80"	NA	inter
LNCA_21_P0006546	2.7303262	A	2.2555578	A	1.38969511016649	0	lncRNA	TCONS_00017364	NA	NA	NA	NA	XLOC_008212	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008212), lincRNA [TCONS_00017364]"	chrX:114929937-114929878	hs|Xq23	Agilent_HUMAN_G3V2	TCONS_00017364	TCONS_00017364	chrX	114929878	114929937	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51_PI429201921	4.6281652	P	4.561824	P	1.04705788378736	0	lncRNA	52-1_{1..1574}	TC09001944.hg.1	TCONS_l2_00029735-XLOC_l2_014797 // Broad TUCP // linc-ANKRD20A1-27 chr9:+:44997776-44999351 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:+:44997776-44999351	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00029735-XLOC_l2_014797	linc-ANKRD20A1-27	chr9	 44997776	 44999351	+	NA	NA	NA	NA	C14orf182	NA	chr14:50464052-50474238	Unknown
LNCA_21_P0001769	0.97126526	A	0.92095554	A	1.0354871999729	0	lncRNA	ENST00000420828	NA	NA	NA	NA	XLOC_001359	NA	ENST00000420828	THC2605279	NA	"BROAD Institute lincRNA (XLOC_001359), lincRNA [TCONS_00002687]"	chr2:13866978-13867037	hs|2p24.3	Agilent_HUMAN_G3V2	ENST00000420828	ENST00000420828	chr2	 13866978	 13867037	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12527_PI429285431	3.405813	A	3.1783519	A	1.17077277256232	0	lncRNA	14138-1_{1..382}	lnc-C1orf144-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf144-1:1	chr1	 16679795	 16680176	+	lnc-C1orf144-1	lnc-C1orf144-1:1	XLOC_000062	linc-C1orf144-1	FBXO42	NA	chr1:16669795-16678948	inter
CUST_29642_PI429285431	2.1756988	A	1.1760305	A	1.99954021901816	0	lncRNA	31403-1_{1..479}	n333220|AF486806|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000080550|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000080550|3.6470000|-0.1716196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333220|AF486806|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000080550|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000080550|3.6470000|-0.1716196	chr2	204732666	204733144	+	NA	NA	NA	NA	CTLA4	NA	chr2:204732511-204738683	inner
CUST_25698_PI429285431	0.9194099	A	0.93030715	A	0.992475057108559	0	lncRNA	27226-1_{1..547}	lnc-SMPD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMPD3-1:1	chr16	 68623311	 68623857	-	lnc-SMPD3-1	lnc-SMPD3-1:1	ENSG00000260084.1	RP11-615I2.1	NA	NA	NA	inter
CUST_39308_PI429285431	3.400182	P	3.2280774	A	1.12670091495222	0	lncRNA	40275-1_{1..619}	n386319|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gub.1||1.8712700|-0.1130760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386319|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gub.1||1.8712700|-0.1130760	chr22	 24051972	 24052590	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001421	0.9148469	A	0.9197503	A	0.99660699142235	0	lncRNA	TCONS_00002231	NA	NA	NA	NA	XLOC_000565	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000565), lincRNA [TCONS_00002231]"	chr1:219098081-219098140	hs|1q41	Agilent_HUMAN_G3V2	TCONS_00002231	TCONS_00002231	chr1	219098081	219098140	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45937_PI429285431	9.973236	P	9.395117	P	1.49290151947548	0	lncRNA	50240-2_{3001..3361}	"gi|214010187|ref|NR_024516.1| Homo sapiens amyloid beta (A4) precursor-like protein 2 (APLP2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|214010187|ref|NR_024516.1| Homo sapiens amyloid beta (A4) precursor-like protein 2 (APLP2), transcript variant 6, non-coding RNA"	Chr11	129942716	129943076	+	334	NR_024516.1	NA	NA	NA	NA	NA	inter
CUST_17549_PI429285431	5.8705115	P	6.199104	P	0.796312991573727	0	lncRNA	19276-1_{1..585}	lnc-MDGA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MDGA2-2:1	chr14	 48704634	 48705218	-	lnc-MDGA2-2	lnc-MDGA2-2:1	XLOC_011014	linc-MDGA2-3	NA	NA	NA	inter
LNCA_21_P0004395	3.0516849	P	2.166335	A	1.84721257566197	0	lncRNA	TCONS_00010345	NA	NA	NA	NA	XLOC_004831	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004831), lincRNA [TCONS_00010345]"	chr5:55832220-55831031	hs|5q11.2	Agilent_HUMAN_G3V2	TCONS_00010345	TCONS_00010345	chr5	 55831031	 55832220	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41882_PI429285431	1.2181913	A	1.6214143	A	0.75616710748119	0	lncRNA	43559-1_{1..145}	ENST00000390145 ncrna:miRNA chromosome:GRCh37:19:56196138:56196282:1 gene:ENSG00000211571 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390145 ncrna:miRNA chromosome:GRCh37:19:56196138:56196282:1 gene:ENSG00000211571 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 56196138	 56196282	+	ENSG00000211571	ENST00000390145	NA	NA	EPN1	NA	chr19:56186561-56206282	inner
CUST_17899_PI429285431	1.095565	A	1.4979978	A	0.756581392482839	0	lncRNA	19632-1_{1..713}	lnc-PLEKHB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLEKHB2-1:1	chr2	132164900	132165612	+	lnc-PLEKHB2-1	lnc-PLEKHB2-1:1	XLOC_001674	linc-TUBA3D-2	NA	NA	NA	inter
CUST_43977_PI429285431	4.2432003	P	4.001355	P	1.18250419367596	0	lncRNA	48678-1_{1..615}	"gi|310119041|ref|XR_109895.1| PREDICTED: Homo sapiens uncharacterized LOC100507474 (LOC100507474), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119041|ref|XR_109895.1| PREDICTED: Homo sapiens uncharacterized LOC100507474 (LOC100507474), misc_RNA"	NA	NA	NA	NA	NA	XR_109895.1	NA	NA	NA	NA	NA	Unknown
CUST_41702_PI429285431	12.062836	P	12.020118	P	1.03005259213078	0	lncRNA	43197-1_{1..96}	ENST00000385099 ncrna:miRNA chromosome:GRCh37:22:23006898:23006993:1 gene:ENSG00000207834 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385099 ncrna:miRNA chromosome:GRCh37:22:23006898:23006993:1 gene:ENSG00000207834 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 23006898	 23006993	+	ENSG00000207834	ENST00000385099	NA	NA	NA	NA	NA	inter
LNCA_21_P0007792	0.92645603	A	0.92480445	A	1.0011454435404	0	lncRNA	TCONS_00020984	NA	NA	NA	NA	XLOC_010249	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010249), lincRNA [TCONS_00020984]"	chr12:127647318-127645975	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020984	TCONS_00020984	chr12	127645975	127647318	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2831_PI429285431	0.9087834	A	0.90464616	A	1.00287183207293	0	lncRNA	2815-1_{1..588}	"transcript_id ""ENST00000414409.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414409.1"" | genecode_v17"	chr7	 51681947	 51682534	+	ENSG00000229403.1	ENST00000414409.1	RP4-718N17.2	RP4-718N17.2-001	NA	NA	NA	inter
CUST_35005_PI429285431	7.739696	P	8.483132	P	0.597315059267928	0	lncRNA	36419-1_{1..2459}	n341935|BC050035|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4416|NULL|-0.5373360|-0.1172258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341935|BC050035|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4416|NULL|-0.5373360|-0.1172258	chr12	 58012187	 58014645	-	NA	NA	NA	NA	DTX3	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SLC26A10:range=chr12:58014004-580195285'pad=0,hg19_refFlat_SLC26A10:range=chr12:58014004-580195285'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00chr12:58002187-58003583"	NA	inner
CUST_30107_PI429285431	10.147395	P	10.423915	P	0.825580042093048	0	lncRNA	31880-1_{1..861}	n334653|AB189400|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000242541|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000242541|3.3900300|-0.1749933	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334653|AB189400|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000242541|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000242541|3.3900300|-0.1749933	chr12	 89745417	 89746277	+	NA	NA	NA	NA	DUSP6	"hg19_refFlat_DUSP6:range=chr12:89743031-897458165'pad=0,hg19_refFlat_DUSP6:range=chr12:89743031-897458165'pad=0 3'pad=0 strand=- repeatMasking=none,-101.40chr12:89735417-89746296"	NA	inner
CUST_35436_PI429285431	2.4906495	A	1.0841401	A	2.65094989056688	0	lncRNA	36842-1_{1..436}	n342499|AF086148|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4993|NULL|-1.2430900|-0.2144595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342499|AF086148|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4993|NULL|-1.2430900|-0.2144595	chr16	 89298617	 89299052	+	NA	NA	NA	NA	ZNF778	NA	chr16:89288617-89295965	inter
CUST_11390_PI429285431	1.0494386	A	1.0520302	A	0.998205252256223	0	lncRNA	12954-1_{1..599}	lnc-LPHN3-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LPHN3-6:1	chr4	 64651291	 64651889	+	lnc-LPHN3-6	lnc-LPHN3-6:1	XLOC_003557	linc-STAP1-7	NA	NA	NA	inter
CUST_21655_PI429285431	0.9619937	A	1.4025763	A	0.736836993481087	0	lncRNA	23266-1_{1..452}	lnc-MAEL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAEL-1:1	chr1	167027544	167027995	+	lnc-MAEL-1	lnc-MAEL-1:1	ENSG00000227907.1	RP11-102C16.3	GPA33	NA	chr1:167022082-167037779	inner
CUST_49590_PI429285431	0.91107476	A	0.9155714	A	0.996888018944474	0	lncRNA	53379-2_{3001..4176}	hg19_lincRNAsTranscripts_TCONS_l2_00024964 range=chr6:147162104-147178269 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024964 range=chr6:147162104-147178269 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	147165104	147166279	-	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-24.51;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
CUST_5670_PI429285431	2.1727545	A	2.2560978	A	0.943867792074158	0	lncRNA	5595-2_{3001..4039}	"transcript_id ""ENST00000599841.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599841.1"" | genecode_v17"	chr16	 86229399	 86230437	-	ENSG00000268505.1	ENST00000599841.1	RP11-805I24.3	RP11-805I24.3-001	NA	NA	NA	inter
CUST_9380_PI429285431	1.1500413	A	0.91249084	A	1.17898916508044	0	lncRNA	10883-1_{1..2837}	lnc-C5orf38-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf38-1:1	chr5	  2932177	  2935013	+	lnc-C5orf38-1	lnc-C5orf38-1:1	XLOC_004256	linc-IRX1-8	NA	NA	NA	inter
CUST_23361_PI429285431	0.9164688	A	0.91603374	A	1.00030160608635	0	lncRNA	24930-2_{3001..4001}	lnc-SLAIN1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLAIN1-4:1	chr13	 79192810	 79193810	+	lnc-SLAIN1-4	lnc-SLAIN1-4:1	ENSG00000234377.2	POU4F1-AS1	RNF219	"hg19_refFlat_RNF219:range=chr13:79189715-792332555'pad=0,hg19_refFlat_RNF219:range=chr13:79189715-792332555'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10chr13:79188421-79203239"	NA	inter
CUST_27675_PI429285431	0.90550584	A	0.90190625	A	1.00249816087642	0	lncRNA	29253-1_{1..1761}	n324882|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170851|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170851|-0.8519380|-0.4187959	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324882|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170851|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170851|-0.8519380|-0.4187959	chr21	 21037109	 21038869	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9443_PI429285431	0.9017248	A	0.9096749	A	0.994504566046339	0	lncRNA	10949-1_{1..447}	lnc-RP11-677O4.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-677O4.1.1-2:1	chr18	 11490466	 11490912	-	lnc-RP11-677O4.1.1-2	lnc-RP11-677O4.1.1-2:1	XLOC_012769	linc-FAM38B-2	NA	NA	NA	inter
CUST_16151_PI429285431	4.4371486	P	4.4272823	P	1.00686223600553	0	lncRNA	17856-1_{1..1005}	lnc-IGFL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGFL1-1:1	chr19	 46707309	 46708313	+	lnc-IGFL1-1	lnc-IGFL1-1:1	XLOC_013100	linc-IGFL1-1	NA	NA	NA	inter
CUST_42250_PI429285431	8.684088	P	9.200199	P	0.69925423914192	0	lncRNA	44387-1_{1..69}	ENST00000387459 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:14674:14742:-1 gene:ENSG00000210194 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000387459 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:14674:14742:-1 gene:ENSG00000210194 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	chrMT	    14674	    14742	-	ENSG00000210194	ENST00000387459	NA	NA	NA	NA	NA	Unknown
CUST_47718_PI429285431	0.91193813	A	0.9160122	A	0.997180053406168	0	lncRNA	51679-2_{3001..6000}	"gi|385137103|ref|NR_047641.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 71, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137103|ref|NR_047641.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 71, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047641.1	NA	NA	NA	NA	NA	inter
CUST_47222_PI429285431	0.903008	A	0.9039569	A	0.999342488895592	0	lncRNA	51297-1_{1..2959}	"gi|342349333|ref|NR_040710.1| Homo sapiens SNAP25 antisense RNA 1 (SNAP25-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|342349333|ref|NR_040710.1| Homo sapiens SNAP25 antisense RNA 1 (SNAP25-AS1), non-coding RNA"	Chr20	 10004460	 10007418	-	100131208	NR_040710.1	NA	NA	NA	NA	NA	inter
CUST_39154_PI429285431	7.19602	P	7.5067077	P	0.80625734302183	0	lncRNA	40131-1_{1..2040}	n385807|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004eon.1||5.9213900|-0.2098643	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385807|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004eon.1||5.9213900|-0.2098643	chrX	109418974	109421013	+	NA	NA	NA	NA	TMEM164	NA	chrX:109408974-109421016	inner
CUST_39109_PI429285431	4.938926	P	4.363881	P	1.48972392930538	0	lncRNA	40086-1_{1..1796}	n385668|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bcv.2||1.1326500|-0.4013227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385668|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bcv.2||1.1326500|-0.4013227	chr9	108471327	108473122	-	NA	NA	NA	NA	TMEM38B	NA	chr9:108461327-108483123	inner
CUST_1874_PI429285431	2.314805	A	1.918694	A	1.31595576989861	0	lncRNA	1864-1_{1..300}	"transcript_id ""ENST00000505741.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505741.1"" | genecode_v17"	chr4	126991863	126992162	+	ENSG00000251649.1	ENST00000505741.1	RP11-318I4.1	RP11-318I4.1-001	NA	NA	NA	inter
CUST_22635_PI429285431	1.801459	A	1.9317423	A	0.91365202004811	0	lncRNA	24221-1_{1..2470}	lnc-PAXIP1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PAXIP1-3:2	chr7	153754518	153756987	-	lnc-PAXIP1-3	lnc-PAXIP1-3:2	ENSG00000203335.3	AC006019.3	DPP6	NA	chr7:153744518-153766646	inner
CUST_24081_PI429285431	4.0541744	P	3.940523	P	1.0819631769773	0	lncRNA	25631-1_{1..561}	lnc-PODXL-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PODXL-1:2	chr7	131012374	131012934	-	lnc-PODXL-1	lnc-PODXL-1:2	ENSG00000236753.1	AC018642.1	MKLN1	NA	chr7:131002374-131022538	inner
CUST_45475_PI429285431	1.2535616	A	1.1120746	A	1.10304144585422	0	lncRNA	49890-1_{1..1943}	"gi|224548939|ref|NR_027151.1| Homo sapiens chromosome 10 open reading frame 108 (C10orf108), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224548939|ref|NR_027151.1| Homo sapiens chromosome 10 open reading frame 108 (C10orf108), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_027151.1	NA	NA	NA	NA	NA	Unknown
CUST_40591_PI429285431	5.855472	P	5.2441463	P	1.52766234108456	0	lncRNA	41339-1_{1..3000}	n410054|NR_036492|lncRNA|Homosapiens||RefGeneNoncode|NR_036492||5.0948500|-0.2336017	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410054|NR_036492|lncRNA|Homosapiens||RefGeneNoncode|NR_036492||5.0948500|-0.2336017	chr1	160246598	160249597	-	NA	NA	NA	NA	COPA	NA	chr1:160258377-160264941	inter
CUST_46981_PI429285431	0.8973492	A	0.8930946	A	1.00295341676144	0	lncRNA	51083-1_{1..3000}	"gi|309951084|ref|NR_036752.1| Homo sapiens nucleolar protein 4 (NOL4), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|309951084|ref|NR_036752.1| Homo sapiens nucleolar protein 4 (NOL4), transcript variant 6, non-coding RNA"	Chr18	 31431064	 31434063	-	8715	NR_036752.1	NA	NA	NA	NA	NA	inter
CUST_10985_PI429285431	0.8995549	A	1.82287	A	0.527295978884742	0	lncRNA	12529-1_{1..1382}	lnc-ONECUT1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ONECUT1-1:2	chr15	 53097866	 53099247	-	lnc-ONECUT1-1	lnc-ONECUT1-1:2	XLOC_011481	linc-ONECUT1	NA	NA	NA	inter
CUST_47927_PI429285431	5.4450474	P	6.422228	P	0.507971478437515	0	lncRNA	51818-1_{1..936}	"gi|410172217|ref|XR_171666.1| PREDICTED: Homo sapiens uncharacterized LOC101059921 (LOC101059921), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410172217|ref|XR_171666.1| PREDICTED: Homo sapiens uncharacterized LOC101059921 (LOC101059921), misc_RNA"	NA	NA	NA	NA	NA	XR_171666.1	NA	NA	NA	NA	NA	Unknown
CUST_41373_PI429285431	9.747695	P	9.57573	P	1.12659189687585	0	lncRNA	42461-1_{1..111}	ENST00000390223 ncrna:miRNA chromosome:GRCh37:X:118780701:118780811:-1 gene:ENSG00000211578 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390223 ncrna:miRNA chromosome:GRCh37:X:118780701:118780811:-1 gene:ENSG00000211578 gene_biotype:miRNA transcript_biotype:miRNA	chrX	118780701	118780811	-	ENSG00000211578	ENST00000390223	NA	NA	6-Sep	NA	chrX:118770701-118790811	inner
CUST_3736_PI429285431	0.89209807	A	0.88849485	A	1.00250068328955	0	lncRNA	3705-1_{1..380}	"transcript_id ""ENST00000445450.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445450.1"" | genecode_v17"	chr10	 77039489	 77039868	-	ENSG00000270087.1	ENST00000445450.1	RP11-399K21.11	RP11-399K21.11-001	NA	NA	NA	inter
CUST_43212_PI429285431	3.5620656	A	3.4792485	P	1.05908405907596	0	lncRNA	48026-1_{1..1904}	ENST00000450483 havana:sense_intronic chromosome:GRCh37:6:128768543:128770446:-1 gene:ENSG00000182404 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,ensembl.GRCh37.72,"	>ENST00000450483 havana:sense_intronic chromosome:GRCh37:6:128768543:128770446:-1 gene:ENSG00000182404 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr6	128768543	128770446	-	ENSG00000182404	ENST00000450483	NA	NA	PTPRK	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-20.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-29.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr6:128758543-128780446"	NA	inner
CUST_42737_PI429285431	10.377674	P	10.296951	P	1.05754789305781	0	lncRNA	45688-1_{1..84}	ENST00000364805 ncrna:snoRNA chromosome:GRCh37:19:49993222:49993305:1 gene:ENSG00000201675 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364805 ncrna:snoRNA chromosome:GRCh37:19:49993222:49993305:1 gene:ENSG00000201675 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	 49993222	 49993305	+	ENSG00000201675	ENST00000364805	NA	NA	FLT3LG	NA	chr19:49983222-49989488	inter
CUST_36772_PI429285431	0.90252894	A	0.89492565	A	1.00528411095417	0	lncRNA	37944-1_{1..2263}	n345251|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_800|NULL|-1.2947700|-0.3150246	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345251|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_800|NULL|-1.2947700|-0.3150246	chr14	 34454358	 34456620	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4871_PI429285431	1.9104047	A	2.3016155	A	0.762489407024009	0	lncRNA	4814-1_{1..442}	"transcript_id ""ENST00000556361.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556361.1"" | genecode_v17"	chr14	 66679528	 66679969	-	ENSG00000258561.1	ENST00000556361.1	RP11-72M17.1	RP11-72M17.1-002	NA	NA	NA	inter
CUST_18328_PI429285431	3.103636	P	3.5995295	P	0.709122363444399	0	lncRNA	20057-1_{1..657}	lnc-VAMP1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-VAMP1-1:7	chr12	  6560529	  6561185	-	lnc-VAMP1-1	lnc-VAMP1-1:7	ENSG00000215039	AC005840.1	TAPBPL	"hg19_refFlat_CD27:range=chr12:6554262-65605585'pad=0,hg19_refFlat_CD27:range=chr12:6554262-65605585'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30chr12:6561177-6570615"	NA	inter
CUST_46806_PI429285431	1.1058246	A	1.6193426	A	0.700512160322022	0	lncRNA	50951-1_{1..1084}	"gi|410170733|ref|XR_132642.3| PREDICTED: Homo sapiens uncharacterized LOC100652927 (LOC100652927), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170733|ref|XR_132642.3| PREDICTED: Homo sapiens uncharacterized LOC100652927 (LOC100652927), misc_RNA"	NA	NA	NA	NA	NA	XR_132642.3	NA	NA	NA	NA	NA	Unknown
CUST_2374_PI429285431	8.202259	P	7.5243216	P	1.59985083601017	0	lncRNA	2367-1_{1..127}	"transcript_id ""ENST00000602301.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602301.1"" | genecode_v17"	chr5	135416160	135416286	-	ENSG00000270123.1	ENST00000602301.1	VTRNA2-1	VTRNA2-1-001	NA	NA	NA	inter
CUST_3328_PI429285431	1.073469	A	0.89085174	A	1.13494096786664	0	lncRNA	3307-1_{1..573}	"transcript_id ""ENST00000523150.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523150.1"" | genecode_v17"	chr8	137059290	137059862	+	ENSG00000253248.1	ENST00000523150.1	RP11-149P24.1	RP11-149P24.1-001	NA	NA	NA	inter
CUST_8648_PI429285431	0.8978575	A	0.89217633	A	1.00394565063213	0	lncRNA	10200-1_{1..1165}	lnc-RP11-19E11.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-19E11.1.1-2:1	chr2	119360157	119361321	-	lnc-RP11-19E11.1.1-2	lnc-RP11-19E11.1.1-2:1	ENSG00000248248	XLOC_002292	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-29.80;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	inter
LNCA_21_P0004585	4.8874073	P	4.9152684	P	0.980873436115922	0	lncRNA	TCONS_00011091	NA	NA	NA	NA	XLOC_005088	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005088), lincRNA [TCONS_00011091]"	chr5:173216027-173215968	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_00011091	TCONS_00011091	chr5	173215968	173216027	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33683_PI429285431	4.574011	P	4.8213954	P	0.842422339723101	0	lncRNA	35244-1_{1..2419}	n340455|AK096806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2916|NULL|-0.4321080|-0.1608898	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340455|AK096806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2916|NULL|-0.4321080|-0.1608898	chr17	  2275156	  2277574	-	NA	NA	NA	NA	MNT	"hg19_refFlat_SGSM2:range=chr17:2240983-22828145'pad=0,hg19_refFlat_SGSM2:range=chr17:2240983-22828145'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.00chr17:2287354-2287575"	NA	inner
CUST_37589_PI429285431	2.5904522	A	1.8426307	A	1.67925520420914	0	lncRNA	38690-1_{1..1726}	n346066|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1616|NULL|-1.3031100|-0.1979903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346066|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1616|NULL|-1.3031100|-0.1979903	chr3	131080673	131082398	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45559_PI429285431	4.3238025	P	4.520625	P	0.872470042319238	0	lncRNA	49958-1_{1..2108}	"gi|389616119|ref|NR_051971.1| Homo sapiens cAMP responsive element modulator (CREM), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|389616119|ref|NR_051971.1| Homo sapiens cAMP responsive element modulator (CREM), transcript variant 9, non-coding RNA"	Chr10	 35484830	 35486937	+	1390	NR_051971.1	NA	NA	NA	NA	NA	inter
CUST_35386_PI429285431	3.731884	P	1.543074	A	4.5592926016788	0	lncRNA	36795-1_{1..684}	n342436|AF086256|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4929|NULL|-1.2822100|-0.4936080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342436|AF086256|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4929|NULL|-1.2822100|-0.4936080	chr19	 52561742	 52562425	-	NA	NA	NA	NA	ZNF841	NA	chr19:52566442-52576956	inter
CUST_28725_PI429285431	0.9058967	A	0.90699357	A	0.999239996601053	0	lncRNA	30425-1_{1..320}	n326115|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046446|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046446|-1.0849900|-0.2767766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326115|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046446|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046446|-1.0849900|-0.2767766	chr10	  2533994	  2534313	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12608_PI429285431	4.5304265	P	4.742932	P	0.863037109556401	0	lncRNA	14221-1_{1..216}	lnc-NAALADL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAALADL1-1:1	chr11	 64835127	 64835342	-	lnc-NAALADL1-1	lnc-NAALADL1-1:1	XLOC_009466	linc-NAALADL1	NAALADL1	NA	chr11:64825127-64826009	inter
CUST_41573_PI429285431	10.018752	P	10.128423	P	0.926799390151644	0	lncRNA	42892-1_{1..64}	ENST00000582839 ncrna:miRNA chromosome:GRCh37:7:44150448:44150511:1 gene:ENSG00000264652 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582839 ncrna:miRNA chromosome:GRCh37:7:44150448:44150511:1 gene:ENSG00000264652 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 44150448	 44150511	+	ENSG00000264652	ENST00000582839	NA	NA	POLD2	NA	chr7:44154286-44160511	inter
CUST_21076_PI429285431	7.4234757	P	7.321069	P	1.07356288429287	0	lncRNA	22702-1_{1..338}	lnc-AC127496.3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC127496.3-4:1	chr17	 78973627	 78973964	-	lnc-AC127496.3-4	lnc-AC127496.3-4:1	ENSG00000263218.1	CTD-2561B21.7	CHMP6	NA	chr17:78965641-78973933	inner
CUST_32163_PI429285431	0.8953523	A	0.89229786	A	1.00211941927482	0	lncRNA	33864-1_{1..3000}	n338735|AK092250|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1155|NULL|1.2237200|-0.2187315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338735|AK092250|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1155|NULL|1.2237200|-0.2187315	chr2	 29284557	 29287556	-	NA	NA	NA	NA	FAM179A	NA	chr2:29274557-29275096	inner
CUST_22180_PI429285431	3.0671082	A	2.8923142	A	1.12880321338474	0	lncRNA	23782-1_{1..460}	lnc-ZDHHC6-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZDHHC6-4:1	chr10	114711537	114711996	-	lnc-ZDHHC6-4	lnc-ZDHHC6-4:1	ENSG00000233547.1	RP11-57H14.2	TCF7L2	"hg19_refFlat_TCF7L2:range=chr10:114710516-1149253935'pad=0,hg19_refFlat_TCF7L2:range=chr10:114710516-1149253935'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.30;hg19_refFlat_TCF7L2:range=chr10:114710516-1149213445'pad=0,hg19_refFlat_TCF7L2:range=chr10:114710516-1149213445'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.30;hg19_refFlat_TCF7L2:range=chr10:114710516-1149204205'pad=0,hg19_refFlat_TCF7L2:range=chr10:114710516-1149204205'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.30;hg19_refFlat_TCF7L2:range=chr10:114710516-1149257315'pad=0,hg19_refFlat_TCF7L2:range=chr10:114710516-1149257315'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.30chr10:114710009-114721634"	NA	inner
CUST_37325_PI429285431	11.593168	P	11.247521	P	1.27072073010287	0	lncRNA	38432-1_{1..496}	n345769|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1318|NULL|-1.4037500|-0.0709254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345769|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1318|NULL|-1.4037500|-0.0709254	chr16	 81789474	 81789969	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23474_PI429285431	9.20478	P	9.272734	P	0.953989967813629	0	lncRNA	25041-1_{1..853}	lnc-PPP1R14B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP1R14B-1:1	chr11	 64016856	 64017708	-	lnc-PPP1R14B-1	lnc-PPP1R14B-1:1	ENSG00000257086.1	RP11-783K16.13	PLCB3	NA	chr11:64018995-64026966	inter
LNCA_21_P0009549	0.92095554	A	0.90867	A	1.00855204902012	0	lncRNA	TCONS_00026497	NA	NA	NA	NA	XLOC_012823	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012823), lincRNA [TCONS_00026497]"	chr18:36472772-36472713	hs|18q12.2	Agilent_HUMAN_G3V2	TCONS_00026497	TCONS_00026497	chr18	 36472713	 36472772	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26647_PI429285431	5.923792	P	6.0099254	P	0.94204416297839	0	lncRNA	28147-2_{3001..5113}	lnc-DCUN1D5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-DCUN1D5-1:1	chr11	102924416	102926528	-	lnc-DCUN1D5-1	lnc-DCUN1D5-1:1	ENSG00000260966.1	RP11-690D19.3	DCUN1D5	NA	chr11:102921413-102936528	inner
CUST_10306_PI429285431	4.9675508	P	5.0789385	P	0.925697223556703	0	lncRNA	11834-1_{1..1385}	lnc-CATSPER3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CATSPER3-3:1	chr5	134602496	134603880	+	lnc-CATSPER3-3	lnc-CATSPER3-3:1	XLOC_004562	linc-SLC25A48-2	NA	NA	NA	inter
CUST_36595_PI429285431	0.8937035	A	0.8915224	A	1.00151296669651	0	lncRNA	37789-1_{1..1182}	n345091|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_640|NULL|-1.3315700|-0.3886622	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345091|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_640|NULL|-1.3315700|-0.3886622	chrX	 75404868	 75406049	+	NA	NA	NA	NA	CXorf26	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50chrX:75394868-75398033"	NA	inter
CUST_27551_PI429285431	10.826183	P	10.788211	P	1.02666961979837	0	lncRNA	29131-1_{1..751}	n324742|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319045|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319045|-1.1625100|-0.3521386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324742|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319045|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319045|-1.1625100|-0.3521386	chr22	 18706467	 18707217	+	NA	NA	NA	NA	LOC642643	"hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20chr22:18703328-18732070"	NA	inter
CUST_8442_PI429285431	3.468305	P	3.6496685	P	0.881869142335476	0	lncRNA	10012-1_{1..1727}	lnc-IKZF2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IKZF2-3:2	chr2	214148757	214150483	-	lnc-IKZF2-3	lnc-IKZF2-3:2	ENSG00000196096	XLOC_002478	SPAG16	"hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0,hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0 3'pad=0 strand=- repeatMasking=none,-57.10;hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr2:214149116-214158929"	NA	inner
LNCA_21_P0001052	0.9251571	A	0.9131317	A	1.00837020804207	0	lncRNA	ENST00000417084	NA	NA	NA	NA	XLOC_000539	NA	ENST00000417084	NA	NA	"BROAD Institute lincRNA (XLOC_000539), lincRNA [TCONS_00000374]"	chr1:207482366-207482425	hs|1q32.2	Agilent_HUMAN_G3V2	ENST00000417084	ENST00000417084	chr1	207482366	207482425	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33956_PI429285431	6.4292808	P	5.1515994	P	2.42449016261269	0	lncRNA	35495-1_{1..2528}	n340760|AK001546|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3223|NULL|-0.8985290|-0.3121988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340760|AK001546|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3223|NULL|-0.8985290|-0.3121988	chr5	176724684	176727211	+	NA	NA	NA	NA	NSD1	NA	chr5:176714684-176727214	inner
CUST_8681_PI429285431	1.1473117	A	1.6748455	A	0.693739626989784	0	lncRNA	10229-1_{1..2170}	lnc-KCNMB2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KCNMB2-7:1	chr3	176911395	176913564	+	lnc-KCNMB2-7	lnc-KCNMB2-7:1	ENSG00000245372	AC078799.1	TBL1XR1	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.46;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50chr3:176901395-176915048"	NA	inner
CUST_4338_PI429285431	1.9456111	A	2.1047075	A	0.895585825594533	0	lncRNA	4293-1_{1..588}	"transcript_id ""ENST00000550138.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550138.1"" | genecode_v17"	chr12	 81664463	 81665050	+	ENSG00000257467.1	ENST00000550138.1	RP11-121G22.3	RP11-121G22.3-002	PPFIA2	NA	chr12:81654463-81701888	inner
CUST_51083_PI429285431	6.967398	P	6.508248	P	1.37473162184389	0	lncRNA	54720-1_{1..1030}	hg19_lincRNAsTranscripts_TCONS_l2_00007206 range=chr13:52743893-52768304 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007206 range=chr13:52743893-52768304 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 52743893	 52744922	-	NA	NA	NA	NA	NEK3	NA	chr13:52733893-52733996	inter
CUST_20366_PI429285431	0.9192046	A	0.9032908	A	1.01109166704032	0	lncRNA	22007-1_{1..604}	lnc-TIMM9-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMM9-2:9	chr14	 58764673	 58765276	-	lnc-TIMM9-2	lnc-TIMM9-2:9	ENSG00000257621.2	RP11-349A22.5	ARID4A	"hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60chr14:58754673-58774833"	NA	inter
CUST_19238_PI429285431	3.433781	P	3.7818723	P	0.785622797476044	0	lncRNA	20907-1_{1..617}	lnc-OLFML2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OLFML2A-1:1	chr9	127534981	127535597	+	lnc-OLFML2A-1	lnc-OLFML2A-1:1	ENSG00000236643.1	RP11-175D17.3	NR6A1	NA	chr9:127524981-127533576	inter
LNCA_21_P0008389	5.6351933	P	5.9606714	P	0.798033879157441	0	lncRNA	TCONS_00022631	NA	NA	NA	NA	XLOC_010932	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010932), lincRNA [TCONS_00022631]"	chr14:101362486-101362545	hs|14q32.2	Agilent_HUMAN_G3V2	TCONS_00022631	TCONS_00022631	chr14	101362486	101362545	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45688_PI429285431	0.9075906	A	1.1328856	A	0.855420092850679	0	lncRNA	50060-1_{1..2630}	"gi|324072953|ref|NR_037915.1| Homo sapiens FAM24B-CUZD1 readthrough (FAM24B-CUZD1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|324072953|ref|NR_037915.1| Homo sapiens FAM24B-CUZD1 readthrough (FAM24B-CUZD1), non-coding RNA"	Chr10	124591671	124594300	-	100533195	NR_037915.1	NA	NA	NA	NA	NA	inter
CUST_27651_PI429285431	0.89888287	A	0.89475733	A	1.00286369899384	0	lncRNA	29229-1_{1..2176}	n324857|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171138|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171138|-0.1647010|-0.4242305	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324857|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171138|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171138|-0.1647010|-0.4242305	chr21	 24722965	 24725140	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0,hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0 3'pad=0 strand=- repeatMasking=none,-48.25;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-13.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70"	NA	inter
LNCA_21_P0006260	0.9549372	A	0.921118	A	1.02371859894015	0	lncRNA	TCONS_00016287	NA	NA	NA	NA	XLOC_007663	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007663), lincRNA [TCONS_00016287]"	chr9:31913702-31909977	hs|9p21.1	Agilent_HUMAN_G3V2	TCONS_00016287	TCONS_00016287	chr9	 31909977	 31913702	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29411_PI429285431	6.695996	P	6.8555026	P	0.895331220793567	0	lncRNA	31165-1_{1..569}	n332776|AF041410|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063659|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063659|-0.1231410|-0.2724836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332776|AF041410|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063659|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063659|-0.1231410|-0.2724836	chr19	 45842440	 45843008	+	NA	NA	NA	NA	KLC3	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60chr19:45835887-45853009"	NA	inter
CUST_48707_PI429285431	2.6681306	A	2.4543078	A	1.15975719779003	0	lncRNA	52549-1_{1..281}	hg19_lincRNAsTranscripts_TCONS_l2_00014848 range=chr2:114632809-114647368 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014848 range=chr2:114632809-114647368 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	114632809	114633089	-	NA	NA	NA	NA	ACTR3	NA	chr2:114647537-114657368	inter
LNCA_21_P0006052	6.2040586	P	6.307389	P	0.930881608793977	0	lncRNA	ENST00000369027	NA	NA	NA	NA	XLOC_007559	NA	ENST00000369027	NA	NA	"BROAD Institute lincRNA (XLOC_007559), lincRNA [TCONS_00015749]"	chr9:127278236-127278295	hs|9q33.3	Agilent_HUMAN_G3V2	ENST00000369027	ENST00000369027	chr9	127278236	127278295	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24842_PI429285431	1.7610906	A	2.2616699	A	0.706822906412667	0	lncRNA	26382-1_{1..411}	lnc-CAMK4-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CAMK4-2:3	chr5	111352837	111353247	+	lnc-CAMK4-2	lnc-CAMK4-2:3	ENSG00000250095.1	NREP-AS1	NA	NA	NA	inter
CUST_19858_PI429285431	7.309635	P	7.2554226	P	1.03829212128917	0	lncRNA	21515-1_{1..1001}	lnc-CCDC64B-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC64B-1:5	chr16	  3107514	  3108514	-	lnc-CCDC64B-1	lnc-CCDC64B-1:5	ENSG00000261971.1	RP11-473M20.7	IL32	"hg19_refFlat_MMP25:range=chr16:3096919-31090995'pad=0,hg19_refFlat_MMP25:range=chr16:3096919-31090995'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.30chr16:3115313-3118448"	NA	inner
CUST_10765_PI429285431	1.6543466	A	1.9588878	A	0.80969967299926	0	lncRNA	12301-1_{1..799}	lnc-ETS1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ETS1-2:1	chr11	128053701	128054499	-	lnc-ETS1-2	lnc-ETS1-2:1	XLOC_009599	linc-KIRREL3	NA	NA	NA	inter
LNCA_21_P0003562	0.9691078	A	0.92157567	A	1.03349551643437	0	lncRNA	TCONS_00007959	NA	NA	NA	NA	XLOC_003431	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003431), lincRNA [TCONS_00007959]"	chr4:3650341-3650400	hs|4p16.3	Agilent_HUMAN_G3V2	TCONS_00007959	TCONS_00007959	chr4	  3650341	  3650400	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40892_PI429285431	7.7387486	P	6.683728	P	2.07774787419619	0	lncRNA	41581-1_{1..3000}	n410704|NR_037985|lncRNA|Homosapiens||RefGeneNoncode|NR_037985||5.8711100|-0.2323428	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410704|NR_037985|lncRNA|Homosapiens||RefGeneNoncode|NR_037985||5.8711100|-0.2323428	chr17	 15902693	 15905692	+	NA	NA	NA	NA	NCOR1	"hg19_refFlat_ZSWIM7:range=chr17:15881361-159029085'pad=0,hg19_refFlat_ZSWIM7:range=chr17:15881361-159029085'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40chr17:15933408-15942723"	NA	inner
CUST_48831_PI429285431	1.340643	A	0.90427554	A	1.35319285060684	0	lncRNA	52669-1_{1..1688}	hg19_lincRNAsTranscripts_TCONS_l2_00019755 range=chr3:6532166-6778421 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019755 range=chr3:6532166-6778421 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	  6532166	  6533853	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3233_PI429285431	1.6442423	A	0.9210349	A	1.6508481237893	0	lncRNA	3212-1_{1..532}	"transcript_id ""ENST00000517796.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517796.1"" | genecode_v17"	chr8	 94228154	 94228685	-	ENSG00000253960.1	ENST00000517796.1	RP11-388K12.1	RP11-388K12.1-001	NA	NA	NA	inter
CUST_399_PI429285431	0.91355896	A	0.9117563	A	1.00125028965774	0	lncRNA	391-1_{1..943}	"transcript_id ""ENST00000430699.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430699.1"" | genecode_v17"	chr1	143347970	143348912	+	ENSG00000242569.2	ENST00000430699.1	RP11-435B5.3	RP11-435B5.3-003	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60"	NA	inter
CUST_33224_PI429285431	1.0707618	A	0.90223	A	1.12391411904041	0	lncRNA	34813-1_{1..1226}	n339923|BC035679|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2372|NULL|0.0177627|-0.3078510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339923|BC035679|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2372|NULL|0.0177627|-0.3078510	chr18	 71878620	 71879845	-	NA	NA	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70"	NA	inter
LNCA_21_P0014285	8.853424	P	8.770987	P	1.058805063991	0	lncRNA	XR_109132	XR_109132	XR_109132	NA	Hs.211461	LOC100506465	uncharacterized LOC100506465	NA	THC2493425	NA	"PREDICTED: Homo sapiens hypothetical LOC100506465, transcript variant 1 (LOC100506465), miscRNA [XR_109132]"	chr12:114183693-114183634	hs|12q24.13	Agilent_HUMAN_G3V2	XR_109132	XR_109132	chr12	114183634	114183693	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47182_PI429285431	3.7132096	P	1.3559091	A	5.1241066380728	0	lncRNA	51259-1_{1..2674}	"gi|256221887|ref|NR_028343.1| Homo sapiens zinc finger protein 415 (ZNF415), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|256221887|ref|NR_028343.1| Homo sapiens zinc finger protein 415 (ZNF415), transcript variant 4, non-coding RNA"	Chr19	 53611132	 53613805	-	55786	NR_028343.1	NA	NA	NA	NA	NA	inter
CUST_22614_PI429285431	2.7179198	A	2.7857792	P	0.954052524630769	0	lncRNA	24199-1_{1..2567}	lnc-ZNF154-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF154-1:1	chr19	 58220307	 58222873	-	lnc-ZNF154-1	lnc-ZNF154-1:1	ENSG00000249233.2	ZNF154	ZNF154	NA	chr19:58211810-58220579	inner
LNCA_21_P0008785	5.342428	P	5.3486834	P	0.9956734736257	0	lncRNA	TCONS_00023794	NA	NA	NA	NA	XLOC_011588	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011588), lincRNA [TCONS_00023794]"	chr15:94074458-94074399	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00023794	TCONS_00023794	chr15	 94074399	 94074458	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12133_PI429285431	5.4157467	P	5.3612514	P	1.03849574134324	0	lncRNA	13730-1_{1..1514}	lnc-SRBD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRBD1-1:1	chr2	 45877092	 45878605	-	lnc-SRBD1-1	lnc-SRBD1-1:1	XLOC_002080	linc-SRBD1-1	PRKCE	NA	chr2:45879043-45887964	inter
CUST_9195_PI429285431	2.239227	A	2.5265577	A	0.819416756308123	0	lncRNA	10707-2_{3001..3627}	lnc-MRPL40-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MRPL40-2:1	chr22	 19412214	 19412840	+	lnc-MRPL40-2	lnc-MRPL40-2:1	ENSG00000248786	AC000079.1	HIRA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-20.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50chr22:19399214-19419219"	NA	inner
CUST_47472_PI429285431	0.9077157	A	0.90177995	A	1.0041228239281	0	lncRNA	51495-2_{3001..5224}	"gi|156713452|ref|NR_003714.1| Homo sapiens POM121 transmembrane nucleoporin-like 9, pseudogene (POM121L9P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|156713452|ref|NR_003714.1| Homo sapiens POM121 transmembrane nucleoporin-like 9, pseudogene (POM121L9P), non-coding RNA"	Chr22	 24650589	 24652812	+	29774	NR_003714.1	NA	NA	NA	"hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0,hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.00"	NA	inter
LNCA_21_P0003585	0.923617	A	1.4342508	A	0.701914007591082	0	lncRNA	TCONS_00008014	NA	NA	NA	NA	XLOC_003479	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003479), lincRNA [TCONS_00008014]"	chr4:26072999-26073058	hs|4p15.2	Agilent_HUMAN_G3V2	TCONS_00008014	TCONS_00008014	chr4	 26072999	 26073058	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51540_PI429285431	2.4610484	A	2.7147279	A	0.838754496135946	0	lncRNA	55107-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00010541 range=chr17:6757117-6804283 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010541 range=chr17:6757117-6804283 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	  6757117	  6760116	+	NA	NA	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90"	NA	inter
CUST_42811_PI429285431	0.91214097	A	0.9101777	A	1.00136176142137	0	lncRNA	45815-1_{1..71}	ENST00000390982 ncrna:snoRNA chromosome:GRCh37:15:25511738:25511808:1 gene:ENSG00000212284 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390982 ncrna:snoRNA chromosome:GRCh37:15:25511738:25511808:1 gene:ENSG00000212284 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 25511738	 25511808	+	ENSG00000212284	ENST00000390982	NA	NA	SNRPN	NA	chr15:25501738-25521808	inter
LNCA_21_P0005701	0.9255368	A	0.9249104	A	1.00043428166689	0	lncRNA	TCONS_00014722	NA	NA	NA	NA	XLOC_006811	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006811), lincRNA [TCONS_00014722]"	chr8:59439829-59439888	hs|8q12.1	Agilent_HUMAN_G3V2	TCONS_00014722	TCONS_00014722	chr8	 59439829	 59439888	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26406_PI429285431	0.9485841	A	0.96781677	A	0.986757394193479	0	lncRNA	27913-1_{1..449}	lnc-NPY2R-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPY2R-2:1	chr4	156281437	156281885	+	lnc-NPY2R-2	lnc-NPY2R-2:1	ENSG00000223424.1	AC097467.2	MAP9	"hg19_refFlat_MAP9:range=chr4:156268935-1562970025'pad=0,hg19_refFlat_MAP9:range=chr4:156268935-1562970025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40chr4:156271437-156291613"	NA	inner
CUST_24675_PI429285431	3.7619832	P	3.523477	P	1.17977046701344	0	lncRNA	26222-1_{1..762}	lnc-TSNAX-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TSNAX-1:1	chr1	232080669	232081430	+	lnc-TSNAX-1	lnc-TSNAX-1:1	ENSG00000226758.1	DISC1-IT1	DISC1	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70chr1:232070669-232090979"	NA	inter
CUST_3951_PI429285431	2.968949	A	2.3996327	A	1.48382021456611	0	lncRNA	3921-1_{1..2110}	"transcript_id ""ENST00000501817.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000501817.2"" | genecode_v17"	chr11	 58897606	 58899715	-	ENSG00000245571.2	ENST00000501817.2	AP001258.4	AP001258.4-001	FAM111B	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90chr11:58887606-58894888"	NA	inter
CUST_48718_PI429285431	5.6429744	P	5.901595	P	0.835886751551662	0	lncRNA	52560-1_{1..1553}	hg19_lincRNAsTranscripts_TCONS_l2_00013970 range=chr2:128145809-128156234 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013970 range=chr2:128145809-128156234 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	128145809	128147361	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4002_PI429285431	7.286508	P	7.240484	P	1.03241571012531	0	lncRNA	3963-1_{1..581}	"transcript_id ""ENST00000544004.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544004.1"" | genecode_v17"	chr11	 69253133	 69253713	-	ENSG00000255606.1	ENST00000544004.1	AP000439.2	AP000439.2-001	NA	NA	NA	inter
CUST_1902_PI429285431	1.0259444	A	0.9189413	A	1.07698869037675	0	lncRNA	1893-1_{1..503}	"transcript_id ""ENST00000511749.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511749.1"" | genecode_v17"	chr4	137047064	137047566	+	ENSG00000250665.1	ENST00000511749.1	RP11-775H9.1	RP11-775H9.1-001	NA	NA	NA	inter
CUST_50599_PI429285431	7.5396	P	7.645355	P	0.929318478699696	0	lncRNA	54287-1_{1..717}	hg19_lincRNAsTranscripts_TCONS_l2_00003646 range=chr10:81525593-81568620 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003646 range=chr10:81525593-81568620 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 81525593	 81526309	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15086_PI429285431	2.4698925	A	1.9055402	A	1.47872348518117	0	lncRNA	16749-1_{1..2617}	lnc-RNASEH1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNASEH1-4:3	chr2	  4021135	  4023751	-	lnc-RNASEH1-4	lnc-RNASEH1-4:3	XLOC_001954	linc-RNASEH1-7	NA	NA	NA	inter
CUST_35371_PI429285431	1.6389413	A	0.93439734	A	1.629629452881	0	lncRNA	36778-1_{1..1706}	n342416|BC071802|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4908|NULL|-1.1259200|-0.3092896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342416|BC071802|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4908|NULL|-1.1259200|-0.3092896	chr2	 62296591	 62298296	-	NA	NA	NA	NA	COMMD1	"hg19_refFlat_RPSA:range=chr3:39449145-394538595'pad=0,hg19_refFlat_RPSA:range=chr3:39449145-394538595'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20chr2:62286591-62363205"	NA	inner
CUST_5129_PI429285431	4.406663	P	4.438466	P	0.978197037128181	0	lncRNA	5069-1_{1..1008}	"transcript_id ""ENST00000602453.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602453.1"" | genecode_v17"	chr15	 30649969	 30650976	-	ENSG00000270173.1	ENST00000602453.1	RP11-382B18.4	RP11-382B18.4-001	CHRFAM7A	NA	chr15:30639969-30660976	inter
CUST_42289_PI429285431	11.485899	P	11.808913	P	0.799398072907547	0	lncRNA	44903-1_{1..125}	ENST00000516197 ncrna:snoRNA chromosome:GRCh37:4:1976363:1976487:1 gene:ENSG00000252006 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516197 ncrna:snoRNA chromosome:GRCh37:4:1976363:1976487:1 gene:ENSG00000252006 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	  1976363	  1976487	+	ENSG00000252006	ENST00000516197	NA	NA	WHSC1	NA	chr4:1966363-1983934	inner
LNCA_21_P0001687	0.9254634	A	0.9166966	A	1.00609518319375	0	lncRNA	ENST00000415686	NA	NA	NA	NA	XLOC_000256	NA	ENST00000415686	THC2691094	NA	"BROAD Institute lincRNA (XLOC_000256), lincRNA [TCONS_00002067]"	chr1:73820850-73820909	hs|1p31.1	Agilent_HUMAN_G3V2	ENST00000415686	ENST00000415686	chr1	 73820850	 73820909	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22457_PI429285431	0.9188846	A	0.91995543	A	0.999258032598684	0	lncRNA	24045-1_{1..553}	lnc-KLHDC4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHDC4-1:3	chr16	 87812414	 87812966	-	lnc-KLHDC4-1	lnc-KLHDC4-1:3	ENSG00000260498.1	RP4-536B24.4	NA	NA	NA	inter
CUST_24233_PI429285431	3.190599	P	0.8961742	A	4.90558367140134	0	lncRNA	25784-1_{1..391}	lnc-BAG2-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BAG2-2:7	chr6	 57453299	 57453689	+	lnc-BAG2-2	lnc-BAG2-2:7	ENSG00000146143.12	PRIM2	PRIM2	NA	chr6:57443299-57463414	inner
CUST_42013_PI429285431	1.4638177	A	0.9821575	A	1.39634960953796	0	lncRNA	43867-1_{1..84}	ENST00000408125 ncrna:miRNA chromosome:GRCh37:15:52569314:52569397:-1 gene:ENSG00000221052 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408125 ncrna:miRNA chromosome:GRCh37:15:52569314:52569397:-1 gene:ENSG00000221052 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 52569314	 52569397	-	ENSG00000221052	ENST00000408125	NA	NA	MYO5C	NA	chr15:52559314-52579397	inner
CUST_14436_PI429285431	6.8414726	P	6.8866286	P	0.969185012362891	0	lncRNA	16097-1_{1..549}	lnc-SLC15A4-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC15A4-5:1	chr12	128506581	128507129	-	lnc-SLC15A4-5	lnc-SLC15A4-5:1	XLOC_010255	linc-DHX37-19	NA	NA	NA	inter
CUST_10650_PI429285431	3.5006194	P	3.5723705	P	0.951482416041764	0	lncRNA	12182-1_{1..699}	lnc-PPDPF-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPDPF-1:4	chr20	 62149046	 62149744	+	lnc-PPDPF-1	lnc-PPDPF-1:4	XLOC_013614	linc-PPDPF-1	PPDPF	NA	chr20:62152133-62153524	inter
CUST_38861_PI429285431	6.5210204	P	6.4152594	P	1.07606184726999	0	lncRNA	39851-1_{1..1870}	n384729|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kuo.2||-0.3744660|-0.1949685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n384729|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kuo.2||-0.3744660|-0.1949685	chr5	127276134	127278003	-	NA	NA	NA	NA	SLC12A2	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-55.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-59.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70chr5:127419483-127429299"	NA	inter
CUST_30725_PI429285431	8.7254	P	8.636374	P	1.06365184166961	0	lncRNA	32508-1_{1..403}	n336274|Y11179|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325636|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325636|-0.9295250|-0.3839891	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336274|Y11179|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325636|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325636|-0.9295250|-0.3839891	chr7	 19155206	 19155608	+	NA	NA	NA	NA	TWIST1	NA	chr7:19155091-19157295	inner
CUST_11365_PI429285431	0.9753825	A	1.1024117	A	0.915715152249583	0	lncRNA	12929-1_{1..202}	lnc-GLRX3-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLRX3-3:3	chr10	132032701	132032902	+	lnc-GLRX3-3	lnc-GLRX3-3:3	XLOC_008668	linc-PPP2R2D-4	NA	NA	NA	inter
CUST_6469_PI429285431	0.9124778	A	0.9119945	A	1.00033505415047	0	lncRNA	6411-1_{1..3000}	"transcript_id ""ENST00000601776.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000601776.1"" | genecode_v17"	chr19	 35330086	 35333085	+	ENSG00000269086.2	ENST00000601776.1	CTC-523E23.5	CTC-523E23.5-001	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
CUST_29321_PI429285431	2.8321643	P	3.4125392	P	0.668789962463346	0	lncRNA	31072-1_{1..371}	n332511|DQ866753|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468617|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468617|-0.9238730|-0.0841445	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332511|DQ866753|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468617|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468617|-0.9238730|-0.0841445	chr19	 39203996	 39204366	+	NA	NA	NA	NA	ACTN4	NA	chr19:39193996-39214367	inner
LNCA_21_P0014264	0.92005074	A	0.9081967	A	1.00825044325997	0	lncRNA	XR_109043	XR_109043	XR_109043	NA	NA	LOC100507245	uncharacterized LOC100507245	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507245 (LOC100507245), miscRNA [XR_109043]"	chr11:43850940-43850881	hs|11p11.2	Agilent_HUMAN_G3V2	XR_109043	XR_109043	chr11	 43850881	 43850940	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19327_PI429285431	1.3643539	A	1.4198831	A	0.962241415228245	0	lncRNA	20993-1_{1..3000}	lnc-CEMP1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CEMP1-4:1	chr16	  2514951	  2517950	-	lnc-CEMP1-4	lnc-CEMP1-4:1	ENSG00000259895.1	RP11-715J22.2	CCNF	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-57.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40chr16:2504951-2508859"	NA	inner
CUST_50858_PI429285431	0.8991288	A	0.89354336	A	1.0038790360491	0	lncRNA	54502-1_{1..924}	hg19_lincRNAsTranscripts_TCONS_l2_00004721 range=chr11:94245639-94265553 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004721 range=chr11:94245639-94265553 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 94245639	 94246562	+	NA	NA	NA	NA	LOC643037	NA	chr11:94245695-94265289	inner
CUST_26737_PI429285431	5.3008413	P	5.351352	P	0.965594457380857	0	lncRNA	28232-1_{1..3000}	n6223|AJ251760|GNAS1-asRNA|Homosapiens|GNAS1-AS|NONCODEv2.0|n6223|NULL|1.5226800|-0.2730873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n6223|AJ251760|GNAS1-asRNA|Homosapiens|GNAS1-AS|NONCODEv2.0|n6223|NULL|1.5226800|-0.2730873	chr20	 57416990	 57419989	-	NA	NA	NA	NA	GNAS	NA	chr20:57414795-57435958	inter
CUST_24596_PI429285431	10.748187	P	10.580736	P	1.123072450184	0	lncRNA	26145-1_{1..484}	lnc-PLEKHO1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLEKHO1-1:1	chr1	150136633	150137116	+	lnc-PLEKHO1-1	lnc-PLEKHO1-1:1	ENSG00000250661.1	RP11-458I7.4	PLEKHO1	NA	chr1:150126633-150131825	inter
LNCA_21_P0007438	2.8191874	A	2.5755436	A	1.1839792524396	0	lncRNA	TCONS_00019914	NA	NA	NA	NA	XLOC_009152	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009152), lincRNA [TCONS_00019914]"	chr11:63262892-63262951	hs|11q12.3	Agilent_HUMAN_G3V2	TCONS_00019914	TCONS_00019914	chr11	 63262892	 63262951	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33329_PI429285431	0.9051062	A	0.90658295	A	0.998976918606103	0	lncRNA	34912-1_{1..3000}	n340046|BC040662|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2501|NULL|-0.5016410|-0.4373676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340046|BC040662|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2501|NULL|-0.5016410|-0.4373676	chr10	 68868454	 68871453	+	NA	NA	NA	NA	CTNNA3	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chr10:68858454-68882073"	NA	inner
CUST_6249_PI429285431	0.8920618	A	0.8951222	A	0.99788094075153	0	lncRNA	6174-1_{1..567}	"transcript_id ""ENST00000581940.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581940.1"" | genecode_v17"	chr18	 68883940	 68884506	-	ENSG00000265484.1	ENST00000581940.1	RP11-47G4.2	RP11-47G4.2-001	NA	NA	NA	inter
CUST_20880_PI429285431	4.6785765	P	4.349174	P	1.25649288338369	0	lncRNA	22512-1_{1..679}	lnc-MANSC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MANSC4-1:1	chr12	 27933432	 27934110	-	lnc-MANSC4-1	lnc-MANSC4-1:1	ENSG00000256747.1	RP11-860B13.1	MANSC4	"hg19_refFlat_KLHDC5:range=chr12:27933264-279510995'pad=0,hg19_refFlat_KLHDC5:range=chr12:27933264-279510995'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.70chr12:27923432-27924209"	NA	inner
CUST_37068_PI429285431	0.92485535	A	0.92582047	A	0.999331253503779	0	lncRNA	38199-1_{1..3000}	n345516|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1065|NULL|-1.4494000|-0.4407499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345516|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1065|NULL|-1.4494000|-0.4407499	chr2	 32070220	 32073219	-	NA	NA	NA	NA	MEMO1	NA	chr2:32092892-32102722	inter
CUST_13981_PI429285431	0.917479	A	1.182018	A	0.832464698693697	0	lncRNA	15626-1_{1..498}	lnc-GMDS-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GMDS-4:1	chr6	  1311062	  1311559	-	lnc-GMDS-4	lnc-GMDS-4:1	XLOC_005574	linc-HUS1B-2	FOXQ1	NA	chr6:1312675-1314993	inter
CUST_43312_PI429285431	4.2138376	P	3.9624548	P	1.19034749733328	0	lncRNA	48143-1_{1..1374}	ENST00000589270 havana:lincRNA chromosome:GRCh37:19:36618669:36620042:1 gene:ENSG00000266902 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000589270 havana:lincRNA chromosome:GRCh37:19:36618669:36620042:1 gene:ENSG00000266902 gene_biotype:lincRNA transcript_biotype:lincRNA	chr19	 36618669	 36620042	+	ENSG00000266902	ENST00000589270	NA	NA	TBCB	"hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr19:36608669-36616849"	NA	inter
CUST_26036_PI429285431	2.0464969	A	2.1388323	A	0.938003102721567	0	lncRNA	27553-1_{1..504}	lnc-NTN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-NTN3-1:1	chr16	  2526559	  2527062	+	lnc-NTN3-1	lnc-NTN3-1:1	ENSG00000260293.1	RP11-715J22.6	TBC1D24	NA	chr16:2525147-2537062	inner
CUST_42696_PI429285431	4.658345	P	4.700404	P	0.97126777406979	0	lncRNA	45621-1_{1..126}	ENST00000411034 ncrna:snoRNA chromosome:GRCh37:7:99549656:99549781:1 gene:ENSG00000222966 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000411034 ncrna:snoRNA chromosome:GRCh37:7:99549656:99549781:1 gene:ENSG00000222966 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 99549656	 99549781	+	ENSG00000222966	ENST00000411034	NA	NA	NA	NA	NA	inter
CUST_24841_PI429285431	0.91952574	A	0.9300956	A	0.992700304489476	0	lncRNA	26381-1_{1..266}	lnc-SLC2A4RG-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC2A4RG-1:2	chr20	 62377174	 62377439	+	lnc-SLC2A4RG-1	lnc-SLC2A4RG-1:2	ENSG00000229299.1	RP4-583P15.10	ZBTB46	NA	chr20:62375021-62387309	inner
CUST_42298_PI429285431	6.187073	P	6.4503875	P	0.83317156030301	0	lncRNA	44913-1_{1..78}	ENST00000582411 ncrna:snoRNA chromosome:GRCh37:HSCHR6_MHC_MANN:31548377:31548454:-1 gene:ENSG00000265325 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582411 ncrna:snoRNA chromosome:GRCh37:HSCHR6_MHC_MANN:31548377:31548454:-1 gene:ENSG00000265325 gene_biotype:snoRNA transcript_biotype:snoRNA	chrHSCHR6_MHC_MANN	 31548377	 31548454	-	ENSG00000265325	ENST00000582411	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014321	6.81245	P	7.967606	P	0.449017631109263	0	lncRNA	XR_109278	XR_109278	XR_109278	NA	Hs.666631	LOC100289092	uncharacterized LOC100289092	NA	THC2633562	NA	"PREDICTED: Homo sapiens hypothetical LOC100289092 (LOC100289092), miscRNA [XR_109278]"	chr16:28890338-28890279	hs|16p11.2	Agilent_HUMAN_G3V2	XR_109278	XR_109278	chr16	 28890279	 28890338	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31920_PI429285431	2.6398783	A	3.5369837	P	0.536963005088	0	lncRNA	33648-1_{1..1820}	n338474|AK124466|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|871|NULL|-1.1173100|-0.3493472	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338474|AK124466|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|871|NULL|-1.1173100|-0.3493472	chr14	 99966516	 99968335	-	NA	NA	NA	NA	CCDC85C	"hg19_refFlat_CCNK:range=chr14:99959015-999771195'pad=0,hg19_refFlat_CCNK:range=chr14:99959015-999771195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30chr14:99977603-99978335"	NA	inner
CUST_2105_PI429285431	1.1226144	A	1.116087	A	1.00453469967921	0	lncRNA	2096-1_{1..424}	"transcript_id ""ENST00000513573.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513573.1"" | genecode_v17"	chr5	 20305674	 20306097	+	ENSG00000249854.1	ENST00000513573.1	RP11-420O16.1	RP11-420O16.1-001	LOC100506187	NA	chr5:20302313-20331624	inter
CUST_26277_PI429285431	5.1324553	P	5.796764	P	0.630990985607528	0	lncRNA	27783-1_{1..526}	lnc-AC009365.3.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC009365.3.1-4:1	chr7	132052402	132052927	+	lnc-AC009365.3.1-4	lnc-AC009365.3.1-4:1	ENSG00000223436.1	AC011625.1	PLXNA4	NA	chr7:132042402-132062735	inner
CUST_34203_PI429285431	4.271922	P	4.6794953	P	0.75389039688143	0	lncRNA	35717-1_{1..2129}	n341057|AK057093|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3523|NULL|-1.0125800|-0.1927159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341057|AK057093|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3523|NULL|-1.0125800|-0.1927159	chr11	 67819099	 67821227	+	NA	NA	NA	NA	CHKA	NA	chr11:67820326-67831228	inner
CUST_20203_PI429285431	2.821612	A	3.005195	A	0.880513482492805	0	lncRNA	21847-1_{1..627}	lnc-C7orf62-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C7orf62-2:1	chr7	 89840614	 89841240	-	lnc-C7orf62-2	lnc-C7orf62-2:1	ENSG00000227646.3	STEAP2-AS1	STEAP2	NA	chr7:89841000-89850949	inter
CUST_1001_PI429285431	0.915822	A	1.1987653	A	0.821912489008689	0	lncRNA	990-1_{1..424}	"transcript_id ""ENST00000413151.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413151.1"" | genecode_v17"	chr2	106575540	106575963	-	ENSG00000234162.1	ENST00000413151.1	AC009505.4	AC009505.4-001	NA	NA	NA	inter
CUST_50102_PI429285431	0.9505322	A	0.8972353	A	1.03763345478403	0	lncRNA	53834-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00028605 range=chr9:3663780-3694788 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028605 range=chr9:3663780-3694788 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	  3663780	  3666779	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50"	NA	inter
CUST_38577_PI429285431	0.9176704	A	1.356215	A	0.737878609974826	0	lncRNA	39588-1_{1..1567}	n383556|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002qim.1||0.1314680|-0.2868101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383556|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002qim.1||0.1314680|-0.2868101	chr19	 55551815	 55553381	-	NA	NA	NA	NA	RDH13	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50chr19:55555692-55563382"	NA	inter
CUST_44124_PI429285431	4.5379186	P	4.281706	P	1.19433917561929	0	lncRNA	48790-1_{1..3000}	"gi|224809303|ref|NR_027299.1| Homo sapiens xeroderma pigmentosum, complementation group C (XPC), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224809303|ref|NR_027299.1| Homo sapiens xeroderma pigmentosum, complementation group C (XPC), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_027299.1	NA	NA	NA	NA	NA	Unknown
CUST_39205_PI429285431	11.478903	P	10.384262	P	2.13559932778034	0	lncRNA	40180-1_{1..1350}	n385991|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xpm.1||3.6915800|-0.2667620	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385991|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xpm.1||3.6915800|-0.2667620	chr10	 66585284	 66586633	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8581_PI429285431	8.650025	P	7.476102	P	2.25624385070148	0	lncRNA	10138-1_{1..2768}	lnc-WDR74-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-WDR74-1:2	chr11	 62622360	 62625127	-	lnc-WDR74-1	lnc-WDR74-1:2	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62633357	inter
CUST_9878_PI429285431	0.9075297	A	0.9050648	A	1.00170999886883	0	lncRNA	11401-1_{1..1461}	lnc-MC3R-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MC3R-2:1	chr20	 54680591	 54682051	+	lnc-MC3R-2	lnc-MC3R-2:1	XLOC_013575	linc-MC3R-2	NA	NA	NA	inter
CUST_1922_PI429285431	1.1046933	A	1.0320641	A	1.05163145522794	0	lncRNA	1913-1_{1..1037}	"transcript_id ""ENST00000514347.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514347.1"" | genecode_v17"	chr4	142161893	142162929	-	ENSG00000248747.1	ENST00000514347.1	RP11-586L23.1	RP11-586L23.1-001	ZNF330	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr4:142151893-142155851"	NA	inter
CUST_46454_PI429285431	3.109135	P	3.2297733	P	0.919780616673634	0	lncRNA	50659-1_{1..3000}	"gi|388454182|ref|NR_049762.1| Homo sapiens mitogen-activated protein kinase binding protein 1 (MAPKBP1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388454182|ref|NR_049762.1| Homo sapiens mitogen-activated protein kinase binding protein 1 (MAPKBP1), transcript variant 5, non-coding RNA"	Chr15	 42066632	 42069631	+	23005	NR_049762.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.71"	NA	inter
CUST_45248_PI429285431	1.5383011	A	1.5963224	A	0.960580681802029	0	lncRNA	49701-1_{1..980}	"gi|397139287|ref|XR_108870.2| PREDICTED: Homo sapiens uncharacterized LOC100506652 (LOC100506652), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|397139287|ref|XR_108870.2| PREDICTED: Homo sapiens uncharacterized LOC100506652 (LOC100506652), misc_RNA"	NA	NA	NA	NA	NA	XR_108870.2	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-28.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10"	NA	Unknown
CUST_32025_PI429285431	0.8976944	A	0.89328367	A	1.00306196332607	0	lncRNA	33746-1_{1..3000}	n338590|AK095715|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|996|NULL|-1.0256300|-0.3167764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338590|AK095715|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|996|NULL|-1.0256300|-0.3167764	chr1	240074962	240077961	+	NA	NA	NA	NA	CHRM3	NA	chr1:240064962-240072720	inter
LNCA_21_P0008128	3.3573549	P	3.3537383	P	1.00250998083405	0	lncRNA	TCONS_00021928	NA	NA	NA	NA	XLOC_010525	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010525), lincRNA [TCONS_00021928]"	chr13:21140434-21140375	hs|13q12.11	Agilent_HUMAN_G3V2	TCONS_00021928	TCONS_00021928	chr13	 21140375	 21140434	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42309_PI429285431	0.9082023	A	0.91262746	A	0.99693741214184	0	lncRNA	44934-1_{1..123}	ENST00000391215 ncrna:snoRNA chromosome:GRCh37:20:5102063:5102185:-1 gene:ENSG00000212517 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391215 ncrna:snoRNA chromosome:GRCh37:20:5102063:5102185:-1 gene:ENSG00000212517 gene_biotype:snoRNA transcript_biotype:snoRNA	chr20	  5102063	  5102185	-	ENSG00000212517	ENST00000391215	NA	NA	CDS2	NA	chr20:5107407-5112185	inner
CUST_48299_PI429285431	7.1734986	P	7.768465	P	0.662059874223968	0	lncRNA	52157-1_{1..1882}	hg19_lincRNAsTranscripts_TCONS_l2_00000125 range=chr1:16973913-16976915 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000125 range=chr1:16973913-16976915 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16973913	 16975794	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46209_PI429285431	0.8996467	A	0.90529394	A	0.996093282669968	0	lncRNA	50451-1_{1..2564}	"gi|223972613|ref|NR_026955.1| Homo sapiens long intergenic non-protein coding RNA 284 (LINC00284), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223972613|ref|NR_026955.1| Homo sapiens long intergenic non-protein coding RNA 284 (LINC00284), non-coding RNA"	Chr13	 44596471	 44599034	+	121838	NR_026955.1	NA	NA	NA	NA	NA	inter
CUST_39991_PI429285431	0.9167111	A	0.9154449	A	1.00087804821886	0	lncRNA	40857-1_{1..1860}	n407103|NR_024605|lncRNA|Homosapiens||RefGeneNoncode|NR_024605||2.4955600|-0.3883124	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407103|NR_024605|lncRNA|Homosapiens||RefGeneNoncode|NR_024605||2.4955600|-0.3883124	chr8	 49635952	 49637811	-	NA	NA	NA	NA	EFCAB1	NA	chr8:49627474-49647870	inter
CUST_11191_PI429285431	1.8442425	A	2.198867	A	0.78207317211676	0	lncRNA	12749-1_{1..2057}	lnc-CEBPG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEBPG-1:1	chr19	 33795284	 33797340	+	lnc-CEBPG-1	lnc-CEBPG-1:1	XLOC_013042	linc-CEBPG	CEBPA	NA	chr19:33790840-33793430	inter
LNCA_21_P0004288	1.1633266	A	1.671126	A	0.703294382953909	0	lncRNA	TCONS_00010076	NA	NA	NA	NA	XLOC_004530	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004530), lincRNA [TCONS_00010076]"	chr5:121176363-121176422	hs|5q23.1	Agilent_HUMAN_G3V2	TCONS_00010076	TCONS_00010076	chr5	121176363	121176422	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004804	0.9262132	A	0.91423905	A	1.00833438754377	0	lncRNA	ENST00000424343	NA	NA	NA	NA	XLOC_005928	NA	ENST00000424343	THC2692987	NA	"BROAD Institute lincRNA (XLOC_005928), lincRNA [TCONS_00011618]"	chr6:168626053-168625994	hs|6q27	Agilent_HUMAN_G3V2	ENST00000424343	ENST00000424343	chr6	168625994	168626053	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23610_PI429285431	5.0624337	P	5.375783	P	0.804771265781847	0	lncRNA	25177-1_{1..953}	lnc-KLHL25-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL25-6:1	chr15	 86123251	 86124203	-	lnc-KLHL25-6	lnc-KLHL25-6:1	ENSG00000259375.1	RP11-815J21.2	AKAP13	"hg19_refFlat_AKAP13:range=chr15:86028952-862879085'pad=0,hg19_refFlat_AKAP13:range=chr15:86028952-862879085'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90chr15:86113251-86133409"	NA	inner
CUST_11020_PI429285431	0.91022503	A	0.91217375	A	0.998650162078167	0	lncRNA	12566-1_{1..295}	lnc-LYRM7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYRM7-1:2	chr5	130590788	130591082	+	lnc-LYRM7-1	lnc-LYRM7-1:2	XLOC_004548	linc-CDC42SE2	CDC42SE2	NA	chr5:130599702-130601014	inter
CUST_23063_PI429285431	2.215037	A	1.9512086	A	1.20066060754882	0	lncRNA	24634-1_{1..577}	lnc-MYB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYB-2:1	chr6	135627973	135628549	+	lnc-MYB-2	lnc-MYB-2:1	ENSG00000234084.1	RP3-388E23.2	AHI1	NA	chr6:135617973-135638296	inner
CUST_26645_PI429285431	1.2249789	A	0.8981695	A	1.25423649155976	0	lncRNA	28146-1_{1..402}	lnc-FAM110B-8:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM110B-8:8	chr8	 58132670	 58133071	+	lnc-FAM110B-8	lnc-FAM110B-8:8	ENSG00000253301.1	RP11-513O17.2	NA	NA	NA	inter
CUST_44095_PI429285431	0.9054476	A	0.90069205	A	1.00330173483269	0	lncRNA	48761-1_{1..1019}	"gi|322812174|ref|NR_037808.1| Homo sapiens uncharacterized LOC150935 (LOC150935), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|322812174|ref|NR_037808.1| Homo sapiens uncharacterized LOC150935 (LOC150935), non-coding RNA"	Chr2	240684554	240685572	+	150935	NR_037808.1	NA	NA	NA	NA	NA	inter
CUST_35538_PI429285431	4.5920763	P	5.276248	P	0.622363043759516	0	lncRNA	36954-2_{3001..3092}	n342661|BC037339|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5163|NULL|-0.7170510|-0.1934226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342661|BC037339|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5163|NULL|-0.7170510|-0.1934226	chr17	 16918229	 16918320	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
LNCA_21_P0010207	1.7416894	A	2.4921765	A	0.594402834205209	0	lncRNA	ENST00000415820	NA	NA	NA	NA	XLOC_014086	NA	ENST00000415820	NA	NA	"BROAD Institute lincRNA (XLOC_014086), lincRNA [TCONS_00028939]"	chr21:42932343-42932284	hs|21q22.3	Agilent_HUMAN_G3V2	ENST00000415820	ENST00000415820	chr21	 42932284	 42932343	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004896	3.3968596	P	3.5787747	P	0.881532032950308	0	lncRNA	TCONS_00011853	NA	NA	NA	NA	XLOC_005339	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005339), lincRNA [TCONS_00011853]"	chr6:68801920-68801979	hs|6q12	Agilent_HUMAN_G3V2	TCONS_00011853	TCONS_00011853	chr6	 68801920	 68801979	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014498	1.6306533	A	0.92169106	A	1.63462787291307	0	lncRNA	ENST00000542627	XR_110102	XR_110102	NA	NA	LOC100506978	NA	ENST00000542627	THC2621235	NA	"PREDICTED: Homo sapiens hypothetical LOC100506978 (LOC100506978), miscRNA [XR_110102]"	chr12:133036551-133036610	hs|12q24.33	Agilent_HUMAN_G3V2	ENST00000542627	ENST00000542627	chr12	133036551	133036610	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38022_PI429285431	1.9671899	A	2.4210486	A	0.730087507834858	0	lncRNA	39108-1_{1..3000}	n377596|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029965||-0.1091590|-0.2680636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377596|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029965||-0.1091590|-0.2680636	chr6	  4125588	  4128587	+	NA	NA	NA	NA	C6orf201	"hg19_refFlat_ECI2:range=chr6:4116108-41357945'pad=0,hg19_refFlat_ECI2:range=chr6:4116108-41357945'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ECI2:range=chr6:4116108-41339055'pad=0,hg19_refFlat_ECI2:range=chr6:4116108-41339055'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr6:4115588-4130999"	NA	inner
CUST_7057_PI429285431	6.1050096	P	6.512021	P	0.75418407884927	0	lncRNA	7002-1_{1..2715}	"transcript_id ""ENST00000602455.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602455.1"" | genecode_v17"	chrX	 49129517	 49132231	+	ENSG00000270012.1	ENST00000602455.1	LL0XNC01-7P3.1	LL0XNC01-7P3.1-001	FOXP3	NA	chrX:49119517-49121288	inner
CUST_16061_PI429285431	4.260733	P	4.3386736	P	0.947409077415742	0	lncRNA	17763-1_{1..635}	lnc-RNF216-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF216-1:1	chr7	  5655582	  5656216	-	lnc-RNF216-1	lnc-RNF216-1:1	XLOC_006348	linc-ACTB	FSCN1	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20chr7:5645582-5646286"	NA	inter
CUST_33940_PI429285431	6.1572337	P	6.307246	P	0.901242778843214	0	lncRNA	35480-1_{1..1012}	n340740|AY358811|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3203|NULL|3.2037100|-0.0715406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340740|AY358811|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3203|NULL|3.2037100|-0.0715406	chr5	170846659	170847670	+	NA	NA	NA	NA	NPM1	NA	chr5:170836659-170837888	inner
CUST_22802_PI429285431	5.5807233	P	5.484453	P	1.06900625898526	0	lncRNA	24382-1_{1..2733}	lnc-KCNK4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNK4-1:1	chr11	 64072015	 64074747	+	lnc-KCNK4-1	lnc-KCNK4-1:1	ENSG00000257069.1	RP11-783K16.10	KCNK4	NA	chr11:64062015-64067503	inner
CUST_4876_PI429285431	0.91898775	A	1.0732512	A	0.898591020258801	0	lncRNA	4819-1_{1..538}	"transcript_id ""ENST00000557409.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557409.1"" | genecode_v17"	chr14	 69657595	 69658132	-	ENSG00000258957.1	ENST00000557409.1	RP11-363J20.1	RP11-363J20.1-002	EXD2	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60chr14:69658194-69668809"	NA	inter
CUST_12372_PI429285431	4.229798	P	4.389849	P	0.894993431897877	0	lncRNA	13984-1_{1..790}	lnc-NVL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-NVL-1:1	chr1	224400457	224401246	-	lnc-NVL-1	lnc-NVL-1:1	XLOC_001225	linc-TP53BP2-3	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.61"	NA	inter
CUST_42743_PI429285431	0.8924181	A	0.8959161	A	0.997578308200679	0	lncRNA	45696-1_{1..72}	ENST00000364540 ncrna:snoRNA chromosome:GRCh37:3:86174366:86174437:1 gene:ENSG00000201410 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364540 ncrna:snoRNA chromosome:GRCh37:3:86174366:86174437:1 gene:ENSG00000201410 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	 86174366	 86174437	+	ENSG00000201410	ENST00000364540	NA	NA	NA	NA	NA	inter
CUST_10660_PI429285431	1.0552408	A	0.932854	A	1.08853424873846	0	lncRNA	12193-1_{1..367}	lnc-CTD-2014B16.3.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2014B16.3.1-1:2	chr14	 66912788	 66913154	-	lnc-CTD-2014B16.3.1-1	lnc-CTD-2014B16.3.1-1:2	XLOC_011056	linc-MAX-2	NA	NA	NA	inter
CUST_35240_PI429285431	3.545198	P	1.4111441	A	4.3894917414437	0	lncRNA	36641-1_{1..1421}	n342239|AL049226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4729|NULL|-1.0829300|-0.3455571	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342239|AL049226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4729|NULL|-1.0829300|-0.3455571	chr15	 59148025	 59149445	+	NA	NA	NA	NA	FAM63B	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10chr15:59138025-59149754"	NA	inner
CUST_20277_PI429285431	4.348859	P	4.322307	P	1.0185748495179	0	lncRNA	21920-1_{1..1180}	lnc-LRCH4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRCH4-1:3	chr7	100200472	100201651	-	lnc-LRCH4-1	lnc-LRCH4-1:3	ENSG00000224729.4	RP13-530H6.2	FBXO24	"hg19_refFlat_FBXO24:range=chr7:100184249-1001985225'pad=0,hg19_refFlat_FBXO24:range=chr7:100184249-1001985225'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_FBXO24:range=chr7:100187264-1001985225'pad=0,hg19_refFlat_FBXO24:range=chr7:100187264-1001985225'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10chr7:100190472-100198740"	NA	inner
CUST_14148_PI429285431	2.4424386	A	1.9875787	A	1.37064969483444	0	lncRNA	15799-1_{1..526}	lnc-PFKFB3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PFKFB3-1:1	chr10	  6183050	  6183575	+	lnc-PFKFB3-1	lnc-PFKFB3-1:1	XLOC_008366	linc-PFKFB3	PFKFB3	NA	chr10:6186843-6193545	inter
CUST_23534_PI429285431	8.125287	P	8.308219	P	0.880910894009843	0	lncRNA	25101-1_{1..550}	lnc-FOXL1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXL1-3:3	chr16	 86771016	 86771565	+	lnc-FOXL1-3	lnc-FOXL1-3:3	ENSG00000261175.1	CTD-2015G9.2	NA	NA	NA	inter
CUST_8006_PI429285431	8.161907	P	8.989075	P	0.563634567723505	0	lncRNA	9617-1_{1..1966}	lnc-SLC46A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC46A2-1:1	chr9	115635151	115637116	-	lnc-SLC46A2-1	lnc-SLC46A2-1:1	ENSG00000249440	ENST00000508251	SNX30	NA	chr9:115625151-115637267	inner
CUST_21647_PI429285431	2.018795	A	1.0995499	A	1.89112549022823	0	lncRNA	23259-1_{1..432}	lnc-AKR1C1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AKR1C1-2:1	chr10	  5039432	  5039863	+	lnc-AKR1C1-2	lnc-AKR1C1-2:1	ENSG00000224251.1	RP11-499O7.7	AKR1C2	NA	chr10:5031965-5049569	inner
CUST_35823_PI429285431	2.1963773	A	1.9662788	A	1.17291502726849	0	lncRNA	37227-2_{3001..5428}	n344497|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_45|NULL|-1.5164300|-0.3616546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344497|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_45|NULL|-1.5164300|-0.3616546	chr12	 97861899	 97864326	+	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30"	NA	inter
CUST_44643_PI429285431	5.350013	P	5.3291707	P	1.01455164057929	0	lncRNA	49207-1_{1..1894}	"gi|365733592|ref|NR_027183.2| Homo sapiens uncharacterized LOC729678 (LOC729678), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|365733592|ref|NR_027183.2| Homo sapiens uncharacterized LOC729678 (LOC729678), transcript variant 1, non-coding RNA"	Chr5	180257957	180259850	+	729678	NR_027183.2	NA	NA	NA	NA	NA	inter
CUST_43348_PI429285431	3.4204197	P	2.2719743	A	2.21674896202714	0	lncRNA	48169-3_{6001..6482}	"gi|383276544|ref|NR_015368.2| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|383276544|ref|NR_015368.2| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 6, non-coding RNA"	Chr1	   768971	   769452	+	643837	NR_015368.2	NA	NA	NA	NA	NA	inter
CUST_27983_PI429285431	3.2175417	P	3.03086	A	1.13814289433079	0	lncRNA	29588-1_{1..555}	n325233|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328926|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328926|1.1784600|-0.1570637	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325233|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328926|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328926|1.1784600|-0.1570637	chr2	 97333062	 97333616	+	NA	NA	NA	NA	FER1L5	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20chr2:97323062-97345485"	NA	inner
LNCA_21_P0001436	0.92747927	A	0.92293286	A	1.0031563019376	0	lncRNA	TCONS_00001326	NA	NA	NA	NA	XLOC_000616	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000616), lincRNA [TCONS_00001326]"	chr1:232450733-232450792	hs|1q42.2	Agilent_HUMAN_G3V2	TCONS_00001326	TCONS_00001326	chr1	232450733	232450792	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1077_PI429285431	0.91625834	A	0.9215729	A	0.996323004485281	0	lncRNA	1066-1_{1..415}	"transcript_id ""ENST00000420184.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420184.1"" | genecode_v17"	chr2	134311886	134312300	+	ENSG00000223430.1	ENST00000420184.1	AC011243.1	AC011243.1-001	NCKAP5	NA	chr2:134301886-134325798	inner
CUST_8702_PI429285431	10.824699	P	9.807217	P	2.02438262912874	0	lncRNA	10248-1_{1..799}	lnc-SERPINC1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:9	chr1	173837098	173837896	-	lnc-SERPINC1-1	lnc-SERPINC1-1:9	ENSG00000234741	GAS5	DARS2	NA	chr1:173827098-173827682	inter
CUST_5244_PI429285431	0.9245918	A	0.9125727	A	1.00836580467319	0	lncRNA	5185-1_{1..1356}	"transcript_id ""ENST00000569742.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569742.1"" | genecode_v17"	chr15	 77334178	 77335533	-	ENSG00000260787.1	ENST00000569742.1	RP11-797A18.4	RP11-797A18.4-001	TSPAN3	NA	chr15:77336359-77345533	inter
CUST_19946_PI429285431	0.9249104	A	0.9207625	A	1.00287924226907	0	lncRNA	21601-1_{1..589}	lnc-DPYS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DPYS-1:1	chr8	105430944	105431532	-	lnc-DPYS-1	lnc-DPYS-1:1	ENSG00000254191.1	KB-1552D7.2	DPYS	NA	chr8:105420944-105441140	inner
CUST_23836_PI429285431	0.9649743	A	1.8455826	A	0.543138373335881	0	lncRNA	25399-1_{1..1999}	lnc-THSD4-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THSD4-3:5	chr15	 72109893	 72111891	+	lnc-THSD4-3	lnc-THSD4-3:5	ENSG00000031544.9	NR2E3	MYO9A	NA	chr15:72118351-72120600	inner
CUST_32551_PI429285431	2.7330537	A	2.845021	A	0.925325401145022	0	lncRNA	34216-1_{1..1938}	n339165|BC043555|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1596|NULL|-0.5865260|-0.1497449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339165|BC043555|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1596|NULL|-0.5865260|-0.1497449	chr2	231751260	231753197	+	NA	NA	NA	NA	ITM2C	NA	chr2:231741260-231743963	inter
CUST_52018_PI429285431	1.2319285	A	1.6489689	A	0.748959493696309	0	lncRNA	55548-1_{1..748}	hg19_lincRNAsTranscripts_TCONS_l2_00017140 range=chr21:15287468-15290148 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017140 range=chr21:15287468-15290148 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 15287468	 15288215	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40423_PI429285431	1.7961364	A	2.17027	A	0.771568633521814	0	lncRNA	41208-1_{1..3000}	n409293|NR_033579|lncRNA|Homosapiens||RefGeneNoncode|NR_033579||13.8952000|-0.1150642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409293|NR_033579|lncRNA|Homosapiens||RefGeneNoncode|NR_033579||13.8952000|-0.1150642	chr15	 82753446	 82756445	+	NA	NA	NA	NA	NA	"hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.00;hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.00;hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00;hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0,hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00"	NA	inter
CUST_4295_PI429285431	2.0525687	A	2.0331051	A	1.01358255552524	0	lncRNA	4250-1_{1..874}	"transcript_id ""ENST00000355869.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000355869.2"" | genecode_v17"	chr12	 66002251	 66003124	-	ENSG00000250748.2	ENST00000355869.2	RP11-230G5.2	RP11-230G5.2-010	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.42;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40"	NA	inter
CUST_41271_PI429285431	0.9003857	A	0.9022045	A	0.998740098251472	0	lncRNA	42238-1_{1..81}	ENST00000385015 ncrna:miRNA chromosome:GRCh37:7:130562218:130562298:-1 gene:ENSG00000207748 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385015 ncrna:miRNA chromosome:GRCh37:7:130562218:130562298:-1 gene:ENSG00000207748 gene_biotype:miRNA transcript_biotype:miRNA	chr7	130562218	130562298	-	ENSG00000207748	ENST00000385015	NA	NA	NA	NA	NA	inter
CUST_37245_PI429285431	0.90022224	A	0.8950269	A	1.00360762715105	0	lncRNA	38352-1_{1..714}	n345676|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1225|NULL|-1.3139200|-0.2925157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345676|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1225|NULL|-1.3139200|-0.2925157	chr4	 89631147	 89631860	+	NA	NA	NA	NA	HERC3	NA	chr4:89621147-89629686	inter
CUST_26897_PI429285431	0.8971364	A	0.8958112	A	1.00091898064787	0	lncRNA	28415-1_{1..316}	n323973|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054108|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054108|-1.5304200|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323973|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054108|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054108|-1.5304200|-1.0000000	chr9	127859679	127859994	+	NA	NA	NA	NA	RABEPK	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10chr9:127912933-127971713"	NA	inner
CUST_45850_PI429285431	1.0437721	A	1.1989577	A	0.898016837277483	0	lncRNA	50180-2_{3001..5364}	"gi|351542245|ref|NR_045286.1| Homo sapiens protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 (PPFIA1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|351542245|ref|NR_045286.1| Homo sapiens protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 (PPFIA1), transcript variant 3, non-coding RNA"	Chr11	 70119806	 70122169	+	8500	NR_045286.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002279	0.92237365	A	0.91153365	A	1.00754201422906	0	lncRNA	TCONS_00003834	NA	NA	NA	NA	XLOC_001641	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001641), lincRNA [TCONS_00003834]"	chr2:121339490-121339549	hs|2q14.2	Agilent_HUMAN_G3V2	TCONS_00003834	TCONS_00003834	chr2	121339490	121339549	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5353_PI429285431	0.92063963	A	0.91491383	A	1.00397670833051	0	lncRNA	5291-1_{1..1357}	"transcript_id ""ENST00000558621.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558621.1"" | genecode_v17"	chr15	 97913601	 97914957	-	ENSG00000259664.1	ENST00000558621.1	CTD-2147F2.2	CTD-2147F2.2-001	NA	NA	NA	inter
CUST_9893_PI429285431	1.174669	A	0.93016106	A	1.18468864027056	0	lncRNA	11417-1_{1..504}	lnc-BAI1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BAI1-4:1	chr8	143078529	143079032	+	lnc-BAI1-4	lnc-BAI1-4:1	XLOC_006949	linc-BAI1-2	NA	NA	NA	inter
CUST_39984_PI429285431	3.8424752	P	5.5978436	P	0.29619754742807	0	lncRNA	40853-1_{1..1632}	n407076|NR_024572|lncRNA|Homosapiens||RefGeneNoncode|NR_024572||3.5709300|-0.2875883	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407076|NR_024572|lncRNA|Homosapiens||RefGeneNoncode|NR_024572||3.5709300|-0.2875883	chr10	 82173590	 82175221	+	NA	NA	NA	NA	C10orf58	"hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80chr10:82168242-82192753"	NA	inner
CUST_17612_PI429285431	1.2449625	A	1.8647472	A	0.650768037574667	0	lncRNA	19336-1_{1..721}	lnc-SRBD1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRBD1-4:2	chr2	 45550110	 45550830	-	lnc-SRBD1-4	lnc-SRBD1-4:2	XLOC_002078	linc-SIX2-2	NA	NA	NA	inter
LNCA_21_P0006178	0.91942894	A	0.9074544	A	1.00833466012422	0	lncRNA	TCONS_00016063	NA	NA	NA	NA	XLOC_007452	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007452), lincRNA [TCONS_00016063]"	chr9:92777802-92777861	hs|9q22.2	Agilent_HUMAN_G3V2	TCONS_00016063	TCONS_00016063	chr9	 92777802	 92777861	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10187_PI429285431	2.6390185	A	2.5522952	A	1.06195549045683	0	lncRNA	11713-1_{1..285}	lnc-CDH5-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH5-10:1	chr16	 63881217	 63881501	+	lnc-CDH5-10	lnc-CDH5-10:1	XLOC_011751	linc-CDH5-4	NA	NA	NA	inter
CUST_46302_PI429285431	6.7230167	P	5.240348	P	2.79465210704713	0	lncRNA	50533-1_{1..3000}	"gi|254692877|ref|NR_028131.1| Homo sapiens cofilin 2 (muscle) (CFL2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|254692877|ref|NR_028131.1| Homo sapiens cofilin 2 (muscle) (CFL2), transcript variant 4, non-coding RNA"	Chr14	 35179588	 35182587	-	1073	NR_028131.1	NA	NA	NA	NA	NA	inter
CUST_16395_PI429285431	3.5533352	P	4.055314	P	0.706137578610298	0	lncRNA	18091-1_{1..699}	lnc-CPXM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPXM2-1:1	chr10	125703709	125704407	-	lnc-CPXM2-1	lnc-CPXM2-1:1	XLOC_008978	linc-CPXM2-1	NA	NA	NA	inter
CUST_2690_PI429285431	2.6569047	A	3.0497255	P	0.761638968656705	0	lncRNA	2676-1_{1..467}	"transcript_id ""ENST00000419196.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419196.1"" | genecode_v17"	chr6	160693649	160694115	+	ENSG00000230234.1	ENST00000419196.1	RP1-276N6.2	RP1-276N6.2-001	NA	NA	NA	inter
CUST_46010_PI429285431	0.9078739	A	0.9974259	A	0.939814544457267	0	lncRNA	50294-1_{1..931}	"gi|397139444|ref|XR_158867.1| PREDICTED: Homo sapiens uncharacterized LOC100996477 (LOC100996477), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139444|ref|XR_158867.1| PREDICTED: Homo sapiens uncharacterized LOC100996477 (LOC100996477), misc_RNA"	NA	NA	NA	NA	NA	XR_158867.1	NA	NA	NA	NA	NA	Unknown
CUST_12003_PI429285431	5.7904034	P	5.841697	P	0.965070605285429	0	lncRNA	13584-1_{1..634}	lnc-SHB-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SHB-1:2	chr9	 38072038	 38072671	-	lnc-SHB-1	lnc-SHB-1:2	XLOC_007686	linc-SHB	SHB	NA	chr9:38062038-38069210	inter
CUST_21960_PI429285431	11.141795	P	11.144891	P	0.997856317305698	0	lncRNA	23568-1_{1..2443}	lnc-SPNS1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPNS1-1:3	chr16	 29001510	 29003952	+	lnc-SPNS1-1	lnc-SPNS1-1:3	ENSG00000261067.1	RP11-264B17.3	LAT	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40chr16:28996147-29002104"	NA	inner
CUST_34033_PI429285431	0.89373624	A	0.8888045	A	1.00342427114305	0	lncRNA	35566-1_{1..1055}	n340851|BC042564|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3315|NULL|0.2033430|-0.2916817	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340851|BC042564|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3315|NULL|0.2033430|-0.2916817	chr6	 12582999	 12584053	-	NA	NA	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80"	NA	inter
CUST_22986_PI429285431	5.661773	P	5.986845	P	0.798258546994928	0	lncRNA	24560-1_{1..415}	lnc-IGFALS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IGFALS-1:1	chr16	  1838980	  1839394	-	lnc-IGFALS-1	lnc-IGFALS-1:1	ENSG00000259936.1	RP11-31I10.2	NUBP2	NA	chr16:1832933-1839192	inner
CUST_14452_PI429285431	6.76454	P	6.9495707	P	0.879630357524897	0	lncRNA	16115-1_{1..416}	lnc-EGLN1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EGLN1-1:7	chr1	231663868	231664283	-	lnc-EGLN1-1	lnc-EGLN1-1:7	XLOC_001257	linc-EGLN1-2	TSNAX	NA	chr1:231664399-231674001	inter
CUST_23368_PI429285431	2.6363325	A	2.6156178	A	1.01446191193887	0	lncRNA	24936-2_{3001..3379}	lnc-KCTD16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-KCTD16-1:1	chr5	143864871	143865249	+	lnc-KCTD16-1	lnc-KCTD16-1:1	ENSG00000259787.1	CTB-85P21.2	KCTD16	NA	chr5:143851871-143856944	inter
CUST_3066_PI429285431	0.9564602	A	0.9287794	A	1.01937211933442	0	lncRNA	3045-1_{1..529}	"transcript_id ""ENST00000519189.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519189.1"" | genecode_v17"	chr8	 34641570	 34642098	+	ENSG00000254344.1	ENST00000519189.1	RP11-258J10.1	RP11-258J10.1-001	NA	NA	NA	inter
CUST_50137_PI429285431	1.9190894	A	2.0110502	A	0.938246689601793	0	lncRNA	53863-1_{1..2457}	hg19_lincRNAsTranscripts_TCONS_l2_00029085 range=chr9:133028065-133072354 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029085 range=chr9:133028065-133072354 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	133028065	133030521	+	NA	NA	NA	NA	LOC100289200	NA	chr9:133028161-133072949	inter
CUST_40643_PI429285431	2.8637776	A	1.2741528	A	3.00971066112459	0	lncRNA	41382-1_{1..1567}	n410168|NR_036650|lncRNA|Homosapiens||RefGeneNoncode|NR_036650||5.1846200|-0.3694582	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410168|NR_036650|lncRNA|Homosapiens||RefGeneNoncode|NR_036650||5.1846200|-0.3694582	chr15	 32812048	 32813614	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	inter
CUST_43528_PI429285431	0.9106836	A	0.8997614	A	1.00759942228182	0	lncRNA	48312-1_{1..1667}	"gi|310118622|ref|XR_110482.1| PREDICTED: Homo sapiens uncharacterized LOC100506051 (LOC100506051), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310118622|ref|XR_110482.1| PREDICTED: Homo sapiens uncharacterized LOC100506051 (LOC100506051), misc_RNA"	NA	NA	NA	NA	NA	XR_110482.1	NA	NA	NA	NA	NA	Unknown
CUST_41417_PI429285431	5.0279856	P	5.0929685	P	0.955956648305601	0	lncRNA	42560-1_{1..96}	ENST00000384823 ncrna:miRNA chromosome:GRCh37:20:62573984:62574079:-1 gene:ENSG00000207554 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384823 ncrna:miRNA chromosome:GRCh37:20:62573984:62574079:-1 gene:ENSG00000207554 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 62573984	 62574079	-	ENSG00000207554	ENST00000384823	NA	NA	UCKL1	NA	chr20:62571182-62584079	inner
CUST_5611_PI429285431	3.802348	P	3.6808505	P	1.08786346580395	0	lncRNA	5539-1_{1..607}	"transcript_id ""ENST00000561875.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561875.1"" | genecode_v17"	chr16	 73420962	 73421568	+	ENSG00000258779.2	ENST00000561875.1	RP11-140I24.1	RP11-140I24.1-004	NA	NA	NA	inter
CUST_13262_PI429285431	0.8946552	A	0.8910812	A	1.00248037908631	0	lncRNA	14893-1_{1..726}	lnc-KCNH8-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNH8-1:2	chr3	 18788473	 18789198	+	lnc-KCNH8-1	lnc-KCNH8-1:2	XLOC_002593	linc-KCNH8-1	NA	NA	NA	inter
CUST_13740_PI429285431	0.9101639	A	0.99663323	A	0.941824834536988	0	lncRNA	15383-1_{1..2096}	lnc-ZDHHC7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZDHHC7-1:1	chr16	 84982804	 84984899	-	lnc-ZDHHC7-1	lnc-ZDHHC7-1:1	XLOC_012031	linc-COTL1-2	NA	NA	NA	inter
CUST_42091_PI429285431	0.89666545	A	0.9071499	A	0.992759075775442	0	lncRNA	44029-1_{1..74}	ENST00000583015 ncrna:miRNA chromosome:GRCh37:5:71465294:71465367:1 gene:ENSG00000264099 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583015 ncrna:miRNA chromosome:GRCh37:5:71465294:71465367:1 gene:ENSG00000264099 gene_biotype:miRNA transcript_biotype:miRNA	chr5	 71465294	 71465367	+	ENSG00000264099	ENST00000583015	NA	NA	MAP1B	NA	chr5:71455294-71475367	inner
CUST_48624_PI429285431	8.992449	P	9.177837	P	0.879412533936373	0	lncRNA	52471-1_{1..212}	hg19_lincRNAsTranscripts_TCONS_l2_00014667 range=chr2:85568532-85568853 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014667 range=chr2:85568532-85568853 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 85568532	 85568743	-	NA	NA	NA	NA	RETSAT	NA	chr2:85568404-85578853	inter
CUST_48414_PI429285431	2.7565227	A	1.4476621	A	2.47745800032417	0	lncRNA	52266-1_{1..1443}	hg19_lincRNAsTranscripts_TCONS_l2_00000568 range=chr1:147554488-147564821 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000568 range=chr1:147554488-147564821 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	147554488	147555930	+	NA	NA	NA	NA	NBPF24	NA	chr1:147552869-147574821	inter
LNCA_21_P0002402	6.659803	P	6.8430724	P	0.880704901353807	0	lncRNA	TCONS_00004141	NA	NA	NA	NA	XLOC_001984	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001984), lincRNA [TCONS_00004141]"	chr2:10176861-10176802	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_00004141	TCONS_00004141	chr2	 10176802	 10176861	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27973_PI429285431	8.356946	P	8.394383	P	0.974384439957808	0	lncRNA	29578-1_{1..437}	n325223|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329514|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329514|-0.9041690|-0.3401774	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325223|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329514|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329514|-0.9041690|-0.3401774	chr2	102950297	102950733	-	NA	NA	NA	NA	IL1RL1	NA	chr2:102940297-102968497	inner
CUST_19677_PI429285431	1.0563718	A	1.1053741	A	0.966604556065533	0	lncRNA	21334-1_{1..367}	lnc-FAM164C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM164C-1:1	chr14	 75603475	 75603841	+	lnc-FAM164C-1	lnc-FAM164C-1:1	ENSG00000259138.1	RP11-950C14.7	TMED10	NA	chr14:75598171-75613633	inner
CUST_41334_PI429285431	3.204852	P	3.7524695	P	0.684149015512985	0	lncRNA	42394-1_{1..155}	ENST00000410659 ncrna:miRNA chromosome:GRCh37:2:66466632:66466786:-1 gene:ENSG00000222591 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410659 ncrna:miRNA chromosome:GRCh37:2:66466632:66466786:-1 gene:ENSG00000222591 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 66466632	 66466786	-	ENSG00000222591	ENST00000410659	NA	NA	NA	NA	NA	inter
CUST_51577_PI429285431	1.0267286	A	1.905271	A	0.543916689822588	0	lncRNA	55142-1_{1..280}	hg19_lincRNAsTranscripts_TCONS_l2_00010609 range=chr17:20245601-20254323 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010609 range=chr17:20245601-20254323 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 20245601	 20245880	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38300_PI429285431	0.92905	A	0.9335552	A	0.996882104086597	0	lncRNA	39352-1_{1..2532}	n381971|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ukd.1||-0.7344730|-0.1435850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381971|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ukd.1||-0.7344730|-0.1435850	chr12	132849278	132851809	-	NA	NA	NA	NA	GALNT9	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70chr12:132839278-132861810"	NA	inner
CUST_27290_PI429285431	0.90065247	A	0.9866593	A	0.942126813681971	0	lncRNA	28847-1_{1..419}	n324440|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041683|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041683|-1.0103800|-0.1850621	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324440|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041683|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041683|-1.0103800|-0.1850621	chr6	107250102	107250520	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48933_PI429285431	1.6631098	A	2.4206157	A	0.591518050915999	0	lncRNA	52775-1_{1..523}	hg19_lincRNAsTranscripts_TCONS_l2_00020216 range=chr3:148947143-148959176 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020216 range=chr3:148947143-148959176 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	148947143	148947665	-	NA	NA	NA	NA	CP	NA	chr3:148937143-148939832	inter
CUST_18121_PI429285431	0.9078442	A	0.90189826	A	1.00412991624312	0	lncRNA	19856-1_{1..948}	lnc-RP11-168K9.2.1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-168K9.2.1-2:4	chr11	126942884	126943831	+	lnc-RP11-168K9.2.1-2	lnc-RP11-168K9.2.1-2:4	XLOC_009323	linc-FLI1-4	NA	NA	NA	inter
CUST_5601_PI429285431	7.053263	P	6.368174	P	1.60780116384007	0	lncRNA	5530-1_{1..399}	"transcript_id ""ENST00000562874.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562874.1"" | genecode_v17"	chr16	 70610204	 70610602	+	ENSG00000260023.1	ENST00000562874.1	RP11-49C24.1	RP11-49C24.1-001	IL34	NA	chr16:70613798-70621571	inner
CUST_18848_PI429285431	6.1411123	P	8.373171	P	0.212854766181767	0	lncRNA	20542-1_{1..1925}	lnc-SART1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SART1-1:1	chr11	 65727288	 65729212	+	lnc-SART1-1	lnc-SART1-1:1	ENSG00000175513	TSGA10IP	SART1	NA	chr11:65729160-65737434	inner
CUST_8113_PI429285431	6.3603706	P	6.24183	P	1.0856361002018	0	lncRNA	9716-1_{1..584}	lnc-WDR54-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR54-1:1	chr2	 74613946	 74614529	+	lnc-WDR54-1	lnc-WDR54-1:1	ENSG00000237737	AC005041.9	DCTN1	NA	chr2:74603946-74619214	inner
CUST_51704_PI429285431	2.2234612	A	1.8653541	A	1.28174307218795	0	lncRNA	55261-1_{1..878}	hg19_lincRNAsTranscripts_TCONS_l2_00011953 range=chr18:10702016-10705798 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011953 range=chr18:10702016-10705798 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 10702016	 10702893	-	NA	NA	NA	NA	FAM38B	NA	chr18:10692016-10715798	inner
CUST_8119_PI429285431	4.7219296	P	4.5086327	P	1.15933451306364	0	lncRNA	9723-1_{1..568}	lnc-MARCKS-5:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MARCKS-5:9	chr6	114316764	114317331	+	lnc-MARCKS-5	lnc-MARCKS-5:9	ENSG00000228624	RP3-399L15.3	NA	NA	NA	inter
CUST_8808_PI429285431	0.91024816	A	0.89611286	A	1.00984599935497	0	lncRNA	10349-1_{1..1807}	lnc-HERC1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HERC1-1:2	chr15	 63892461	 63894267	-	lnc-HERC1-1	lnc-HERC1-1:2	ENSG00000247530	ENSG00000259248.1	HERC1	"hg19_refFlat_USP3:range=chr15:63796939-638830255'pad=0,hg19_refFlat_USP3:range=chr15:63796939-638830255'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30chr15:63900817-63903008"	NA	inter
CUST_3424_PI429285431	5.958453	P	6.176398	P	0.85978926344593	0	lncRNA	3396-1_{1..3000}	"transcript_id ""ENST00000603805.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603805.1"" | genecode_v17"	chr9	 70937327	 70940326	+	ENSG00000234394.3	ENST00000603805.1	RP11-561O23.5	RP11-561O23.5-003	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
CUST_21639_PI429285431	0.90482116	A	0.90724486	A	0.998321429556344	0	lncRNA	23251-1_{1..567}	lnc-ABCC6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ABCC6-1:2	chr16	 16385986	 16386552	-	lnc-ABCC6-1	lnc-ABCC6-1:2	ENSG00000262848.1	RP11-517A5.5	NOMO3	NA	chr16:16375986-16388668	inner
LNCA_21_P0009865	2.7749178	A	3.648083	P	0.545947753954856	0	lncRNA	ENST00000366097	NA	NA	NA	NA	XLOC_013582	NA	ENST00000366097	NA	NA	"BROAD Institute lincRNA (XLOC_013582), lincRNA [TCONS_00027961]"	chr20:55692198-55696664	hs|20q13.31	Agilent_HUMAN_G3V2	ENST00000366097	ENST00000366097	chr20	 55692198	 55696664	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2558_PI429285431	0.90674925	A	0.9025972	A	1.00288212711633	0	lncRNA	2546-1_{1..441}	"transcript_id ""ENST00000421318.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421318.1"" | genecode_v17"	chr6	 75352100	 75352540	+	ENSG00000224583.1	ENST00000421318.1	RP11-554D15.4	RP11-554D15.4-001	NA	NA	NA	inter
CUST_1352_PI429285431	5.375443	P	5.187272	P	1.13931841054316	0	lncRNA	1340-1_{1..1602}	"transcript_id ""ENST00000492683.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000492683.1"" | genecode_v17"	chr3	 55330228	 55331829	+	ENSG00000240708.1	ENST00000492683.1	RP11-64C1.1	RP11-64C1.1-001	NA	NA	NA	inter
CUST_11571_PI429285431	3.1248324	P	3.7370653	P	0.654183419770707	0	lncRNA	13148-1_{1..2388}	lnc-GPR132-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR132-1:1	chr14	105538497	105540884	-	lnc-GPR132-1	lnc-GPR132-1:1	XLOC_011152	linc-GPR132	GPR132	NA	chr14:105528497-105531754	inter
CUST_377_PI429285431	1.0388694	A	1.104432	A	0.955572605433727	0	lncRNA	369-1_{1..575}	"transcript_id ""ENST00000604156.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604156.1"" | genecode_v17"	chr1	117907521	117908095	-	ENSG00000271427.1	ENST00000604156.1	RP11-188D8.1	RP11-188D8.1-001	MAN1A2	NA	chr1:117910085-117918095	inter
LNCA_33_P3340094	0.92630136	A	0.9143478	A	1.00831999679846	0	lncRNA	XR_110166	XR_110166	XR_110166	   400841	Hs.516959	FLJ45832	FLJ45832 protein	NA	NA	NA	"PREDICTED: Homo sapiens FLJ45832 protein (FLJ45832), miscRNA [XR_110166]"	chr20:29513653-29513594	hs|20q11.21	Agilent_HUMAN_G3V2	XR_110166	XR_110166	chr20	 29513594	 29513653	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17557_PI429285431	9.310876	P	9.408894	P	0.93431568968131	0	lncRNA	19285-1_{1..638}	lnc-CMC1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMC1-2:3	chr3	 27754902	 27755539	+	lnc-CMC1-2	lnc-CMC1-2:3	XLOC_002602	linc-CMC1-2	EOMES	NA	chr3:27757868-27763785	inter
CUST_19292_PI429285431	7.120142	P	7.109831	P	1.00717264162751	0	lncRNA	20959-1_{1..432}	lnc-MKL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MKL1-1:1	chr22	 40784149	 40784580	-	lnc-MKL1-1	lnc-MKL1-1:1	ENSG00000229999.1	RP5-1042K10.10	SGSM3	NA	chr22:40774149-40794294	inner
CUST_3019_PI429285431	6.7448235	P	6.441536	P	1.23395304724372	0	lncRNA	2998-1_{1..458}	"transcript_id ""ENST00000521055.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521055.1"" | genecode_v17"	chr8	 16461764	 16462221	+	ENSG00000253184.1	ENST00000521055.1	RP11-13N12.2	RP11-13N12.2-001	NA	NA	NA	inter
CUST_654_PI429285431	4.665424	P	3.9670358	P	1.62269088564907	0	lncRNA	646-1_{1..368}	"transcript_id ""ENST00000457813.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457813.1"" | genecode_v17"	chr2	  2733680	  2734047	-	ENSG00000227364.1	ENST00000457813.1	AC018685.2	AC018685.2-001	NA	NA	NA	inter
CUST_37415_PI429285431	5.396633	P	4.112969	P	2.43456496731471	0	lncRNA	38521-1_{1..279}	n345870|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1419|NULL|-1.2844000|-0.3121787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345870|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1419|NULL|-1.2844000|-0.3121787	chr1	121107155	121107433	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_27463_PI429285431	0.9197787	A	0.924951	A	0.996421253869222	0	lncRNA	29035-1_{1..575}	n324641|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322216|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322216|-1.0824000|-0.3167787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324641|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322216|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322216|-1.0824000|-0.3167787	chr4	 74794882	 74795456	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43088_PI429285431	11.20433	P	10.866061	P	1.26423880213585	0	lncRNA	47348-1_{1..125}	ENST00000516280 ncrna:snRNA chromosome:GRCh37:20:53476227:53476351:-1 gene:ENSG00000252089 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516280 ncrna:snRNA chromosome:GRCh37:20:53476227:53476351:-1 gene:ENSG00000252089 gene_biotype:snRNA transcript_biotype:snRNA	chr20	 53476227	 53476351	-	ENSG00000252089	ENST00000516280	NA	NA	NA	NA	NA	inter
CUST_42393_PI429285431	3.6947818	P	4.4096155	P	0.60927535918977	0	lncRNA	45087-1_{1..124}	ENST00000364993 ncrna:snoRNA chromosome:GRCh37:4:40084603:40084726:1 gene:ENSG00000201863 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364993 ncrna:snoRNA chromosome:GRCh37:4:40084603:40084726:1 gene:ENSG00000201863 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	 40084603	 40084726	+	ENSG00000201863	ENST00000364993	NA	NA	N4BP2	NA	chr4:40074603-40094726	inner
CUST_49756_PI429285431	0.8984879	A	0.8949055	A	1.00248621598147	0	lncRNA	53525-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00025849 range=chr7:45831388-45863181 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025849 range=chr7:45831388-45863181 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 45831388	 45834387	+	NA	NA	NA	NA	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-60.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_4878_PI429285431	1.0808251	A	0.91238964	A	1.12383906903472	0	lncRNA	4821-1_{1..565}	"transcript_id ""ENST00000556646.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556646.1"" | genecode_v17"	chr14	 70892529	 70893093	-	ENSG00000257759.2	ENST00000556646.1	RP11-486O13.4	RP11-486O13.4-001	ADAM21	NA	chr14:70918874-70926622	inner
CUST_30733_PI429285431	7.624179	P	7.6210084	P	1.0022001091468	0	lncRNA	32516-1_{1..222}	n336287|Y13897|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325809|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325809|-1.1114400|-0.3229442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336287|Y13897|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325809|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325809|-1.1114400|-0.3229442	chr13	 37583647	 37583868	+	NA	NA	NA	NA	FAM48A	"hg19_refFlat_SUPT20H:range=chr13:37583809-376256275'pad=0,hg19_refFlat_SUPT20H:range=chr13:37583809-376256275'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20chr13:37583449-37593869"	NA	inner
CUST_51475_PI429285431	5.0251236	P	5.912504	P	0.540594822588112	0	lncRNA	55050-1_{1..540}	hg19_lincRNAsTranscripts_TCONS_l2_00010132 range=chr16:33710592-33725908 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010132 range=chr16:33710592-33725908 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 33710592	 33711131	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22411_PI429285431	1.8294559	A	0.89831775	A	1.90677967178177	0	lncRNA	24000-1_{1..1916}	lnc-TGFBR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TGFBR2-1:1	chr3	 30739153	 30741068	+	lnc-TGFBR2-1	lnc-TGFBR2-1:1	ENSG00000261468.1	RP11-1024P17.1	TGFBR2	NA	chr3:30729153-30735634	inter
CUST_45815_PI429285431	0.9110248	A	1.2933524	A	0.767198816535576	0	lncRNA	50150-1_{1..864}	"gi|223972672|ref|NR_026946.1| Homo sapiens long intergenic non-protein coding RNA 301 (LINC00301), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223972672|ref|NR_026946.1| Homo sapiens long intergenic non-protein coding RNA 301 (LINC00301), non-coding RNA"	Chr11	 60383224	 60384087	+	283197	NR_026946.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0007796	6.932948	P	7.013991	P	0.945373939149763	0	lncRNA	TCONS_00020990	NA	NA	NA	NA	XLOC_010255	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010255), lincRNA [TCONS_00020990]"	chr12:128506590-128504948	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020990	TCONS_00020990	chr12	128504948	128506590	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34554_PI429285431	3.1501572	P	3.2329857	A	0.944204654563342	0	lncRNA	36014-1_{1..1578}	n341435|CR604228|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3905|NULL|-0.7783180|-0.2460345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341435|CR604228|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3905|NULL|-0.7783180|-0.2460345	chr13	111474474	111476051	+	NA	NA	NA	NA	NA	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_40230_PI429285431	5.051649	P	3.3780289	P	3.19014079964818	0	lncRNA	41052-1_{1..3000}	n408092|NR_028024|lncRNA|Homosapiens||RefGeneNoncode|NR_028024||5.6456600|-0.3727325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408092|NR_028024|lncRNA|Homosapiens||RefGeneNoncode|NR_028024||5.6456600|-0.3727325	chr11	 85368607	 85371606	-	NA	NA	NA	NA	TMEM126A	NA	chr11:85358963-85367597	inter
CUST_48205_PI429285431	1.8125623	A	2.255046	A	0.735866671807555	0	lncRNA	52068-1_{1..2865}	hg19_lincRNAsTranscripts_TCONS_l2_00001220 range=chr1:48226273-48462480 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001220 range=chr1:48226273-48462480 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 48226273	 48229137	-	NA	NA	NA	NA	LOC388630	NA	chr1:48226200-48462562	inner
CUST_16950_PI429285431	0.8908411	A	0.8973304	A	0.995512061032485	0	lncRNA	18662-1_{1..3000}	lnc-C9orf170-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C9orf170-1:1	chr9	 89613509	 89616508	+	lnc-C9orf170-1	lnc-C9orf170-1:1	XLOC_007438	linc-C9orf170-1	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60"	NA	inter
CUST_46893_PI429285431	1.4209266	A	1.5303664	A	0.926947926871683	0	lncRNA	51016-1_{1..2404}	"gi|336176048|ref|NR_038415.1| Homo sapiens BZRAP1 antisense RNA 1 (BZRAP1-AS1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|336176048|ref|NR_038415.1| Homo sapiens BZRAP1 antisense RNA 1 (BZRAP1-AS1), transcript variant 6, non-coding RNA"	Chr17	 56414563	 56416966	+	100506779	NR_038415.1	NA	NA	NA	"hg19_refFlat_SUPT4H1:range=chr17:56423607-564294965'pad=0,hg19_refFlat_SUPT4H1:range=chr17:56423607-564294965'pad=0 3'pad=0 strand=- repeatMasking=none,-97.40"	NA	inter
CUST_38670_PI429285431	3.6958168	P	4.16043	P	0.724665340772931	0	lncRNA	39670-1_{1..2552}	n383967|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yjj.3||0.6352690|-0.2927421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n383967|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yjj.3||0.6352690|-0.2927421	chr21	 15349069	 15351620	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
LNCA_21_P0010614	0.9196557	A	1.0667841	A	0.903046135380661	0	lncRNA	TCONS_l2_00001232	NA	NA	NA	NA	XLOC_l2_000910	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000910), lincRNA [TCONS_l2_00001232]"	chr1:52016914-52016855	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_l2_00001232	TCONS_l2_00001232	chr1	 52016855	 52016914	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17623_PI429285431	4.6147156	P	4.508801	P	1.07617641888353	0	lncRNA	19348-1_{1..264}	lnc-PEAK1.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PEAK1.1-1:4	chr15	 77712348	 77712611	-	lnc-PEAK1.1-1	lnc-PEAK1.1-1:4	XLOC_011535	linc-PEAK1	HMG20A	NA	chr15:77702348-77722525	inner
CUST_3832_PI429285431	1.2004383	A	1.7657775	A	0.675796507584058	0	lncRNA	3799-1_{1..748}	"transcript_id ""ENST00000420845.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420845.1"" | genecode_v17"	chr10	129727640	129728387	-	ENSG00000232259.1	ENST00000420845.1	RP11-4C20.3	RP11-4C20.3-001	PTPRE	NA	chr10:129717640-129742781	inner
CUST_35238_PI429285431	7.3556123	P	6.6254053	P	1.6588770926719	0	lncRNA	36639-1_{1..989}	n342232|CR625502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4722|NULL|1.0039100|-0.3586123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342232|CR625502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4722|NULL|1.0039100|-0.3586123	chr1	 25619872	 25620860	-	NA	NA	NA	NA	RHD	NA	chr1:25609872-25630861	inner
CUST_20916_PI429285431	0.9105011	A	0.92283577	A	0.991486703368854	0	lncRNA	22547-1_{1..426}	lnc-AP1G1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AP1G1-1:1	chr16	 71915999	 71916424	-	lnc-AP1G1-1	lnc-AP1G1-1:1	ENSG00000261765.1	RP11-498D10.3	ATXN1L	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60chr16:71905999-71919174"	NA	inner
CUST_22693_PI429285431	1.1762437	A	0.9107756	A	1.20202599825572	0	lncRNA	24276-1_{1..347}	lnc-GNRHR2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNRHR2-1:4	chr1	145507436	145507782	-	lnc-GNRHR2-1	lnc-GNRHR2-1:4	ENSG00000234222.1	RP11-315I20.1	LIX1L	NA	chr1:145497436-145499091	inner
CUST_2554_PI429285431	1.7725236	A	1.4225421	A	1.27454428344911	0	lncRNA	2542-1_{1..451}	"transcript_id ""ENST00000421704.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421704.1"" | genecode_v17"	chr6	 72126087	 72126537	-	ENSG00000233237.2	ENST00000421704.1	LINC00472	LINC00472-005	NA	NA	NA	inter
CUST_15337_PI429285431	0.904159	A	0.9071256	A	0.997945822290941	0	lncRNA	17016-1_{1..408}	lnc-PRKD1-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRKD1-3:6	chr14	 29744136	 29744543	-	lnc-PRKD1-3	lnc-PRKD1-3:6	XLOC_010986	linc-NOVA1-5	NA	NA	NA	inter
CUST_10863_PI429285431	10.691637	P	10.328648	P	1.2860876774647	0	lncRNA	12400-1_{1..327}	lnc-C5orf43-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf43-3:2	chr5	 60922171	 60922497	-	lnc-C5orf43-3	lnc-C5orf43-3:2	XLOC_004842	linc-C5orf43-1	NA	NA	NA	inter
CUST_43934_PI429285431	0.9940038	A	1.6475357	A	0.635722078974698	0	lncRNA	48644-1_{1..2204}	"gi|224586908|ref|NR_027244.1| Homo sapiens uncharacterized LOC151009 (LOC151009), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|224586908|ref|NR_027244.1| Homo sapiens uncharacterized LOC151009 (LOC151009), non-coding RNA"	Chr2	111132686	111134889	-	151009	NR_027244.1	NA	NA	NA	"hg19_refFlat_ZBTB45:range=chr19:59025421-590290405'pad=0,hg19_refFlat_ZBTB45:range=chr19:59025421-590290405'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20"	NA	inter
CUST_30073_PI429285431	0.9218873	A	1.2185655	A	0.814124759224172	0	lncRNA	31842-1_{1..674}	n334589|U74387|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221242|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221242|-1.3578200|-0.3416851	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334589|U74387|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221242|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221242|-1.3578200|-0.3416851	chr6	  2616733	  2617406	-	NA	NA	NA	NA	C6orf195	NA	chr6:2622972-2628227	inter
CUST_30751_PI429285431	3.0382354	A	3.3985262	P	0.779007541465162	0	lncRNA	32536-1_{1..281}	n336570|Z15107|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326532|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326532|1.4181100|-0.2425464	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336570|Z15107|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326532|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326532|1.4181100|-0.2425464	chr22	 22735460	 22735740	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004065	0.926784	A	0.92024344	A	1.0045438629026	0	lncRNA	ENST00000511165	NA	NA	NA	NA	XLOC_004568	NA	ENST00000511165	NA	NA	"BROAD Institute lincRNA (XLOC_004568), lincRNA [TCONS_00009522]"	chr5:135844560-135844619	hs|5q31.1	Agilent_HUMAN_G3V2	ENST00000511165	ENST00000511165	chr5	135844560	135844619	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5590_PI429285431	1.0592957	A	0.9033863	A	1.11412368261932	0	lncRNA	5519-1_{1..2147}	"transcript_id ""ENST00000499966.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000499966.1"" | genecode_v17"	chr16	 66442427	 66444573	+	ENSG00000246898.1	ENST00000499966.1	CTD-2258A20.4	CTD-2258A20.4-001	CDH5	NA	chr16:66432427-66438689	inter
CUST_37439_PI429285431	2.5704775	A	2.4592433	A	1.08015189213389	0	lncRNA	38538-1_{1..928}	n345887|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1436|NULL|-1.3771700|-0.2682630	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345887|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1436|NULL|-1.3771700|-0.2682630	chr5	  6766023	  6766950	+	NA	NA	NA	NA	PAPD7	NA	chr5:6756023-6757161	inter
CUST_42741_PI429285431	0.9249481	A	0.9138925	A	1.00769259511021	0	lncRNA	45693-1_{1..71}	ENST00000390889 ncrna:snoRNA chromosome:GRCh37:4:179607040:179607110:-1 gene:ENSG00000212191 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390889 ncrna:snoRNA chromosome:GRCh37:4:179607040:179607110:-1 gene:ENSG00000212191 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	179607040	179607110	-	ENSG00000212191	ENST00000390889	NA	NA	NA	NA	NA	inter
CUST_26948_PI429285431	8.253319	P	8.236273	P	1.01188546424818	0	lncRNA	28469-1_{1..456}	n324029|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053049|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053049|-1.0616500|-0.2070281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324029|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053049|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053049|-1.0616500|-0.2070281	chr9	 93949814	 93950269	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38964_PI429285431	6.3570056	P	6.3910575	P	0.976673393150821	0	lncRNA	39948-1_{1..2279}	n385179|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tsr.3||3.4519700|-0.1878601	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385179|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tsr.3||3.4519700|-0.1878601	chr7	 62856724	 62859002	-	NA	NA	NA	NA	LOC100506447	NA	chr7:62857832-62859970	inter
CUST_48233_PI429285431	3.3280063	A	2.3293333	A	1.9981612331671	0	lncRNA	52095-1_{1..1113}	hg19_lincRNAsTranscripts_TCONS_l2_00001622 range=chr1:173386950-173429721 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001622 range=chr1:173386950-173429721 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	173386950	173388062	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29097_PI429285431	4.752078	P	4.7285113	P	1.01646934035619	0	lncRNA	30830-1_{1..963}	n326593|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023101|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023101|-0.9045710|-0.3951699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326593|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023101|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023101|-0.9045710|-0.3951699	chr1	 59370195	 59371157	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3768_PI429285431	1.0414592	A	0.8962494	A	1.10589146288362	0	lncRNA	3736-1_{1..831}	"transcript_id ""ENST00000425365.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425365.1"" | genecode_v17"	chr10	 92222474	 92223304	+	ENSG00000238291.1	ENST00000425365.1	RP11-94M14.3	RP11-94M14.3-001	NA	NA	NA	inter
CUST_18397_PI429285431	2.004872	A	3.0336885	A	0.490112042286283	0	lncRNA	20122-1_{1..550}	lnc-AC005493.1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC005493.1-1:9	chr7	 34797686	 34798235	-	lnc-AC005493.1-1	lnc-AC005493.1-1:9	ENSG00000197085	AC005688.1	NPSR1	NA	chr7:34787686-34807884	inter
CUST_48745_PI429285431	2.6477034	A	2.0664155	A	1.49618430273362	0	lncRNA	52583-1_{1..995}	hg19_lincRNAsTranscripts_TCONS_l2_00013998 range=chr2:132440113-132443258 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013998 range=chr2:132440113-132443258 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	132440113	132441107	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46707_PI429285431	3.989763	P	4.2385893	P	0.841580802232695	0	lncRNA	50866-1_{1..1379}	"gi|307133741|ref|NR_027335.2| Homo sapiens 5-hydroxyisourate hydrolase pseudogene (LOC100130015), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|307133741|ref|NR_027335.2| Homo sapiens 5-hydroxyisourate hydrolase pseudogene (LOC100130015), transcript variant 2, non-coding RNA"	Chr16	 90106169	 90107547	-	100130015	NR_027335.2	NA	NA	NA	"hg19_refFlat_GAS8:range=chr16:90089130-901097535'pad=0,hg19_refFlat_GAS8:range=chr16:90089130-901097535'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00"	NA	inter
CUST_4161_PI429285431	6.1423044	P	5.9282312	P	1.1599585074205	0	lncRNA	4119-1_{1..979}	"transcript_id ""ENST00000412084.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412084.1"" | genecode_v17"	chr12	 10089178	 10090156	-	ENSG00000225231.1	ENST00000412084.1	AC091814.2	AC091814.2-001	CLEC12A	NA	chr12:10103915-10106094	inter
CUST_8704_PI429285431	0.9115896	A	0.9172622	A	0.996075773284469	0	lncRNA	10250-1_{1..828}	lnc-RASA1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASA1-7:1	chr5	 88327575	 88328402	+	lnc-RASA1-7	lnc-RASA1-7:1	ENSG00000248309	CTC-454M9.1	NA	NA	NA	inter
CUST_33369_PI429285431	0.89738333	A	0.8923118	A	1.00352150269287	0	lncRNA	34949-1_{1..2044}	n340087|BC067888|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2542|NULL|-0.8899140|-0.2460419	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340087|BC067888|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2542|NULL|-0.8899140|-0.2460419	chr10	 79542623	 79544666	+	NA	NA	NA	NA	DLG5	"hg19_refFlat_DLG5:range=chr10:79552198-796862785'pad=0,hg19_refFlat_DLG5:range=chr10:79552198-796862785'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60chr10:79550549-79562934"	NA	inner
CUST_31965_PI429285431	3.6599412	P	3.698646	P	0.973528554318353	0	lncRNA	33688-1_{1..1739}	n338522|CR627053|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|920|NULL|0.3139150|-0.1747795	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n338522|CR627053|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|920|NULL|0.3139150|-0.1747795	chr19	 36031639	 36033377	-	NA	NA	NA	NA	ATP4A	"hg19_refFlat_GAPDHS:range=chr19:36024430-360360725'pad=0,hg19_refFlat_GAPDHS:range=chr19:36024430-360360725'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90chr19:36041095-36046931"	NA	inner
CUST_14981_PI429285431	3.0967686	A	3.3089218	P	0.863247885286345	0	lncRNA	16644-1_{1..229}	lnc-EZH2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EZH2-1:1	chr7	148322451	148322679	-	lnc-EZH2-1	lnc-EZH2-1:1	XLOC_006638	linc-TPK1-2	C7orf33	NA	chr7:148312451-148312952	inter
CUST_22269_PI429285431	0.89960426	A	0.8953742	A	1.0029363568376	0	lncRNA	23870-1_{1..703}	lnc-KIF26B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIF26B-1:1	chr1	246198521	246199223	+	lnc-KIF26B-1	lnc-KIF26B-1:1	ENSG00000235096.1	RP11-83A16.1	SMYD3	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-23.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-63.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60chr1:246188521-246208905"	NA	inner
CUST_32854_PI429285431	3.8679307	P	1.4996219	A	5.16335502792237	0	lncRNA	34487-1_{1..3000}	n339518|AK023647|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1959|NULL|-0.0176159|-0.3177456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339518|AK023647|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1959|NULL|-0.0176159|-0.3177456	chr21	 42651025	 42654024	+	NA	NA	NA	NA	BACE2	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70chr21:42641025-42648524"	NA	inter
CUST_18565_PI429285431	0.9161049	A	0.91246116	A	1.00252884024371	0	lncRNA	20275-1_{1..781}	lnc-TMEM30B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM30B-1:3	chr14	 61789253	 61790033	-	lnc-TMEM30B-1	lnc-TMEM30B-1:3	ENSG00000247287	RP11-902B17.1	PRKCH	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr14:61788515-61799512"	NA	inner
CUST_36146_PI429285431	0.89464086	A	0.89229476	A	1.00162751556853	0	lncRNA	37422-10_{27001..30000}	n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	chr8	128116803	128119802	-	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00"	NA	inter
CUST_18882_PI429285431	5.9369144	P	6.8110185	P	0.545592568990606	0	lncRNA	20576-1_{1..865}	lnc-VAMP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-VAMP1-1:2	chr12	  6560635	  6561499	-	lnc-VAMP1-1	lnc-VAMP1-1:2	ENSG00000215039	AC005840.1	TAPBPL	"hg19_refFlat_CD27:range=chr12:6554262-65605585'pad=0,hg19_refFlat_CD27:range=chr12:6554262-65605585'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00chr12:6561177-6570700"	NA	inter
CUST_6437_PI429285431	2.0805113	A	2.6193047	A	0.688346367833667	0	lncRNA	6378-1_{1..554}	"transcript_id ""ENST00000593140.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593140.1"" | genecode_v17"	chr19	 31156181	 31156734	-	ENSG00000267760.1	ENST00000593140.1	CTC-565M22.1	CTC-565M22.1-001	NA	NA	NA	inter
CUST_37665_PI429285431	0.9067687	A	0.90550584	A	1.00087573107718	0	lncRNA	38758-1_{1..1320}	n346148|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1698|NULL|-1.6188400|-0.2817876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346148|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1698|NULL|-1.6188400|-0.2817876	chr13	 44885286	 44886605	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29648_PI429285431	9.341737	P	9.392736	P	0.965267693944106	0	lncRNA	31409-1_{1..215}	n333246|AF533920|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000081381_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000081381_03|-1.1483300|-0.2183563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333246|AF533920|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000081381_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000081381_03|-1.1483300|-0.2183563	chr6	  4060938	  4061152	+	NA	NA	NA	NA	PRPF4B	NA	chr6:4050938-4065217	inner
CUST_11512_PI429285431	1.3024354	A	1.0386684	A	1.20060950943696	0	lncRNA	13082-1_{1..463}	lnc-ZNF462-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF462-1:3	chr9	109435150	109435612	+	lnc-ZNF462-1	lnc-ZNF462-1:3	XLOC_007502	linc-ZNF462-1	NA	NA	NA	inter
CUST_26958_PI429285431	4.111033	P	4.6762233	P	0.675866259881041	0	lncRNA	28480-1_{1..295}	n324040|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053023|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053023|-1.2638400|-0.2073804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324040|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053023|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053023|-1.2638400|-0.2073804	chr9	 92759362	 92759656	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35958_PI429285431	0.91172993	A	0.91589934	A	0.997114157286549	0	lncRNA	37311-1_{1..3000}	n344586|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_134|NULL|-1.5506700|-0.3116415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n344586|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_134|NULL|-1.5506700|-0.3116415	chr10	  6780396	  6783395	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2190_PI429285431	1.1356589	A	0.89810425	A	1.17899258920795	0	lncRNA	2182-1_{1..594}	"transcript_id ""ENST00000512573.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512573.1"" | genecode_v17"	chr5	 71869947	 71870540	-	ENSG00000248371.1	ENST00000512573.1	CTC-347C20.2	CTC-347C20.2-001	LOC389300	NA	chr5:71869991-71904388	inter
CUST_42953_PI429285431	0.89354384	A	0.891456	A	1.00144822808036	0	lncRNA	46077-1_{1..80}	ENST00000516178 ncrna:snoRNA chromosome:GRCh37:3:53564349:53564428:-1 gene:ENSG00000251987 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516178 ncrna:snoRNA chromosome:GRCh37:3:53564349:53564428:-1 gene:ENSG00000251987 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	 53564349	 53564428	-	ENSG00000251987	ENST00000516178	NA	NA	CACNA1D	NA	chr3:53554349-53574428	inner
CUST_22888_PI429285431	0.90687627	A	0.9083594	A	0.998972500861211	0	lncRNA	24465-1_{1..342}	lnc-TBCK-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBCK-3:2	chr4	106748270	106748611	-	lnc-TBCK-3	lnc-TBCK-3:2	ENSG00000251175.1	RP11-45L9.1	GSTCD	NA	chr4:106738270-106758326	inner
CUST_35961_PI429285431	0.88653713	A	0.8828302	A	1.00257275193884	0	lncRNA	37313-1_{1..3000}	n344588|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_136|NULL|-1.5526600|-0.1498977	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344588|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_136|NULL|-1.5526600|-0.1498977	chr21	 44880077	 44883076	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6590_PI429285431	2.1522565	A	3.0542774	P	0.535136596753112	0	lncRNA	6538-1_{1..675}	"transcript_id ""ENST00000589101.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589101.1"" | genecode_v17"	chr19	 55911113	 55911787	-	ENSG00000267093.1	ENST00000589101.1	CTD-2105E13.13	CTD-2105E13.13-001	UBE2S	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.80chr19:55912650-55919325"	NA	inter
CUST_51492_PI429285431	4.240256	P	3.0873265	P	2.22364964956696	0	lncRNA	55068-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00010197 range=chr16:56175875-56224775 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010197 range=chr16:56175875-56224775 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 56175875	 56178874	-	NA	NA	NA	NA	GNAO1	NA	chr16:56225251-56234775	inter
CUST_84_PI429201921	3.0343747	A	3.272738	A	0.847706467995861	0	lncRNA	86-1_{1..2515}	TC01004867.hg.1	 TCONS_l2_00000708-XLOC_l2_000522 // Broad TUCP // linc-KIAA1614-1 chr1:+:180877831-180878239 // chr1 // 100 // 100 // 0 // --- // 0/// TCONS_l2_00002251-XLOC_l2_000522 // Broad TUCP // linc-KIAA1614-1 chr1:+:180876936-180878078 // chr1 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00002250-XLOC_l2_000522 // Broad TUCP // linc-KIAA1614-1 chr1:+:180875786-180878302 // chr1 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:180875786-180878302	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00002250-XLOC_l2_000522	linc-KIAA1614-1	chr1	180875786	180878302	+	NA	NA	NA	NA	RPS5	NA	chr19:58905623-58906171	Unknown
CUST_22925_PI429285431	1.4398305	A	1.035758	A	1.32323793513899	0	lncRNA	24501-1_{1..645}	lnc-KCNJ9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNJ9-1:1	chr1	160049374	160050018	+	lnc-KCNJ9-1	lnc-KCNJ9-1:1	ENSG00000225279.1	RP11-536C5.2	KCNJ10	NA	chr1:160039374-160040051	inter
CUST_29015_PI429285431	0.90954435	A	0.91877466	A	0.993622460036091	0	lncRNA	30740-1_{1..657}	n326500|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029981|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029981|-1.1034100|-0.4794799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326500|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029981|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029981|-1.1034100|-0.4794799	chr1	102437882	102438538	-	NA	NA	NA	NA	OLFM3	NA	chr1:102427882-102462790	inner
CUST_666_PI429285431	1.9966832	A	2.4214826	A	0.744942305104964	0	lncRNA	659-1_{1..812}	"transcript_id ""ENST00000453880.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453880.1"" | genecode_v17"	chr2	  4007852	  4008663	-	ENSG00000237401.2	ENST00000453880.1	AC107070.1	AC107070.1-003	NA	NA	NA	inter
CUST_2879_PI429285431	1.0622735	A	1.3203253	A	0.836216375006069	0	lncRNA	2860-1_{1..788}	"transcript_id ""ENST00000438065.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438065.1"" | genecode_v17"	chr7	 85050438	 85051225	+	ENSG00000225128.1	ENST00000438065.1	AC074112.1	AC074112.1-002	NA	NA	NA	inter
CUST_33446_PI429285431	1.466591	A	0.8909048	A	1.49038617826146	0	lncRNA	35024-1_{1..2649}	n340181|AK123890|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2642|NULL|3.9169000|-0.3501349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340181|AK123890|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2642|NULL|3.9169000|-0.3501349	chr4	 90757574	 90760222	+	NA	NA	NA	NA	SNCA	NA	chr4:90747574-90759447	inner
CUST_12316_PI429285431	6.747943	P	6.6258574	P	1.08830701270902	0	lncRNA	13929-1_{1..897}	lnc-RP11-1085N6.3.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-1085N6.3.1-2:2	chr14	 56981688	 56982584	-	lnc-RP11-1085N6.3.1-2	lnc-RP11-1085N6.3.1-2:2	XLOC_011038	linc-TBPL2-2	NA	NA	NA	inter
CUST_190_PI429201921	0.8975867	A	0.89755225	A	1.00002387920547	0	lncRNA	155-1_{1..3000}	TC19002147.hg.1	TCONS_00026792-XLOC_013083 // Rinn lincRNAs // linc-ZNF526-1 chr19:+:42656720-42661675 // chr19 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr19:+:42656720-42661675	NA	Affy_HUMAN_HTA2.0	TCONS_00026792-XLOC_013083	linc-ZNF526-1	chr19	 42656720	 42661675	+	NA	NA	NA	NA	NECAP2	NA	chr1:16777443-16786585	Unknown
CUST_2449_PI429285431	0.89599454	A	0.89457804	A	1.00098232514687	0	lncRNA	2441-1_{1..360}	"transcript_id ""ENST00000520163.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520163.1"" | genecode_v17"	chr5	178804506	178804865	+	ENSG00000253979.1	ENST00000520163.1	RP11-443C10.2	RP11-443C10.2-001	NA	NA	NA	inter
CUST_19_PI429285431	2.9400847	A	2.6385074	A	1.23249116088824	0	lncRNA	18-1_{1..199}	"transcript_id ""ENST00000517363.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000517363.1"" | genecode_v17"	chr8	 37333472	 37333670	-	ENSG00000253161.1	ENST00000517363.1	RP11-150O12.1	RP11-150O12.1-002	NA	NA	NA	inter
CUST_47874_PI429285431	4.9709687	P	4.2211957	P	1.68152823062399	0	lncRNA	51771-3_{6001..9000}	"gi|410171545|ref|XR_171240.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410171545|ref|XR_171240.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	XR_171240.1	NA	NA	NA	NA	NA	Unknown
CUST_37020_PI429285431	8.850207	P	9.079478	P	0.853065840711523	0	lncRNA	38158-1_{1..1142}	n345475|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1024|NULL|-1.3794000|-0.2534978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345475|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1024|NULL|-1.3794000|-0.2534978	chr1	175850680	175851821	-	NA	NA	NA	NA	RFWD2	NA	chr1:175891081-175912755	inter
CUST_44877_PI429285431	2.6351924	A	0.98258585	A	3.14401162068701	0	lncRNA	49401-1_{1..2286}	"gi|300796247|ref|NR_034084.1| Homo sapiens uncharacterized LOC729852 (LOC729852), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300796247|ref|NR_034084.1| Homo sapiens uncharacterized LOC729852 (LOC729852), non-coding RNA"	Chr7	  7680342	  7682627	+	729852	NR_034084.1	NA	NA	NA	NA	NA	inter
CUST_30064_PI429285431	9.164705	P	9.205137	P	0.972363739623145	0	lncRNA	31833-1_{1..352}	n334580|U68068|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221038|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221038|-1.0417000|-0.3179409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334580|U68068|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221038|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221038|-1.0417000|-0.3179409	chr6	152011715	152012066	+	NA	NA	NA	NA	ESR1	NA	chr6:152011631-152139116	inner
CUST_18881_PI429285431	3.3780289	P	3.6743526	P	0.814324831089847	0	lncRNA	20575-1_{1..587}	lnc-SEC22A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SEC22A-2:1	chr3	123363351	123363937	+	lnc-SEC22A-2	lnc-SEC22A-2:1	ENSG00000239523	MYLK-AS1	MYLK	"hg19_refFlat_MYLK:range=chr3:123332952-1235126885'pad=0,hg19_refFlat_MYLK:range=chr3:123332952-1235126885'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30chr3:123353351-123373415"	NA	inner
CUST_11789_PI429285431	1.9822779	A	2.0918176	A	0.926883742210886	0	lncRNA	13370-1_{1..257}	lnc-C15orf2-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-9:2	chr15	 24519938	 24520194	+	lnc-C15orf2-9	lnc-C15orf2-9:2	XLOC_011174	linc-C15orf2-8	NA	NA	NA	inter
LNCA_21_P0001425	0.91651714	A	0.9043337	A	1.00848067598725	0	lncRNA	TCONS_00001282	NA	NA	NA	NA	XLOC_000569	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000569), lincRNA [TCONS_00001282]"	chr1:220554597-220554656	hs|1q41	Agilent_HUMAN_G3V2	TCONS_00001282	TCONS_00001282	chr1	220554597	220554656	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13020_PI429285431	7.2184334	P	7.5029984	P	0.820989115331056	0	lncRNA	14648-1_{1..3000}	lnc-CPN2-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPN2-1:10	chr3	194023546	194026545	-	lnc-CPN2-1	lnc-CPN2-1:10	XLOC_003385	linc-ATP13A4-8	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20"	NA	inter
LNCA_21_P0003796	0.91816133	A	0.9059322	A	1.0085126149698	0	lncRNA	TCONS_00008645	NA	NA	NA	NA	XLOC_004161	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004161), lincRNA [TCONS_00008645]"	chr4:174048903-174048844	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_00008645	TCONS_00008645	chr4	174048844	174048903	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30_PI429201921	0.8963804	A	1.0542511	A	0.896347030113464	0	lncRNA	31-1_{1..1078}	TC01004114.hg.1	TCONS_00000126-XLOC_000005 // Rinn lincRNAs // linc-SAMD11-7 chr1:+:696290-697369 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:696290-697369	NA	Affy_HUMAN_HTA2.0	TCONS_00000126-XLOC_000005	linc-SAMD11-7	chr1	   696290	   697369	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13422_PI429285431	4.118451	P	4.1579156	P	0.973015977349881	0	lncRNA	15060-2_{3001..6000}	lnc-C9orf50-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf50-2:1	chr9	132271465	132274464	-	lnc-C9orf50-2	lnc-C9orf50-2:1	XLOC_007868	linc-IER5L-2	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_SSH1:range=chr12:109185876-1092211815'pad=0,hg19_refFlat_SSH1:range=chr12:109185876-1092211815'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SSH1:range=chr12:109185876-1092512725'pad=0,hg19_refFlat_SSH1:range=chr12:109185876-1092512725'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10"	NA	inter
CUST_30825_PI429285431	0.91617835	A	0.9140547	A	1.00147308593674	0	lncRNA	32612-1_{1..403}	n336754|Z77842|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328133|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328133|1.5160500|-0.2230839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336754|Z77842|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328133|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328133|1.5160500|-0.2230839	chr14	 22337267	 22337669	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11605_PI429285431	0.89856637	A	1.5136738	A	0.652881275059678	0	lncRNA	13184-1_{1..217}	lnc-KITLG-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KITLG-2:1	chr12	 89177981	 89178197	-	lnc-KITLG-2	lnc-KITLG-2:1	XLOC_010146	linc-KITLG-1	NA	NA	NA	inter
CUST_6632_PI429285431	1.2159812	A	1.8665197	A	0.637042486953115	0	lncRNA	6578-1_{1..395}	"transcript_id ""ENST00000587737.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587737.1"" | genecode_v17"	chr20	  5479762	  5480156	+	ENSG00000266908.1	ENST00000587737.1	RP5-1022P6.7	RP5-1022P6.7-001	NA	NA	NA	inter
CUST_44979_PI429285431	7.3593154	P	7.868368	P	0.702683730109558	0	lncRNA	49489-1_{1..1452}	"gi|356874774|ref|NR_037776.2| Homo sapiens Williams Beuren syndrome chromosome region 22 (WBSCR22), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|356874774|ref|NR_037776.2| Homo sapiens Williams Beuren syndrome chromosome region 22 (WBSCR22), transcript variant 3, non-coding RNA"	NW_003871064.1	  1212804	  1214255	+	114049	NR_037776.2	NA	NA	NA	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-54.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60"	NA	Unknown
CUST_23503_PI429285431	0.8925499	A	0.8920703	A	1.0003324886499	0	lncRNA	25070-1_{1..502}	lnc-CTIF-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTIF-2:1	chr18	 46652532	 46653033	+	lnc-CTIF-2	lnc-CTIF-2:1	ENSG00000265128.1	RP11-15F12.3	DYM	NA	chr18:46642532-46662849	inner
CUST_43422_PI429285431	0.92831004	A	0.9275823	A	1.00050455817586	0	lncRNA	48234-1_{1..3000}	"gi|400154070|ref|NR_073091.1| Homo sapiens MYST/Esa1-associated factor 6 (MEAF6), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|400154070|ref|NR_073091.1| Homo sapiens MYST/Esa1-associated factor 6 (MEAF6), transcript variant 5, non-coding RNA"	Chr1	 37955561	 37958560	-	64769	NR_073091.1	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30"	NA	inter
CUST_30008_PI429285431	0.89905316	A	0.895345	A	1.00257360670369	0	lncRNA	31774-1_{1..668}	n334411|S83545|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000217216|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000217216|2.9357700|-0.1129331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334411|S83545|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000217216|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000217216|2.9357700|-0.1129331	chr5	   477486	   478153	-	NA	NA	NA	NA	SLC9A3	NA	chr5:473334-493482	inner
CUST_20871_PI429285431	1.5104672	A	0.9133633	A	1.51267693331661	0	lncRNA	22502-1_{1..554}	lnc-USP6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP6-2:1	chr17	  5126612	  5127165	+	lnc-USP6-2	lnc-USP6-2:1	ENSG00000261879.1	RP11-333E1.1	C17orf87	"hg19_refFlat_SCIMP:range=chr17:5114096-51380505'pad=0,hg19_refFlat_SCIMP:range=chr17:5114096-51380505'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10chr17:5116612-5136938"	NA	inter
CUST_40100_PI429285431	7.4248066	P	7.2215414	P	1.15130110707734	0	lncRNA	40945-1_{1..1905}	n407512|NR_026972_5|lncRNA|Homosapiens||RefGeneNoncode|NR_026972_5||-1.1165600|-0.2987642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407512|NR_026972_5|lncRNA|Homosapiens||RefGeneNoncode|NR_026972_5||-1.1165600|-0.2987642	chr6	  1210562	  1212466	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22564_PI429285431	0.9040416	A	0.8987224	A	1.00369379378599	0	lncRNA	24151-1_{1..549}	lnc-COMMD6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COMMD6-2:1	chr13	 76209965	 76210513	-	lnc-COMMD6-2	lnc-COMMD6-2:1	ENSG00000261105.1	RP11-173B14.5	LMO7	"hg19_refFlat_UCHL3:range=chr13:76134943-761799485'pad=0,hg19_refFlat_UCHL3:range=chr13:76134943-761799485'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_UCHL3:range=chr13:76123957-761799485'pad=0,hg19_refFlat_UCHL3:range=chr13:76123957-761799485'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30chr13:76199965-76220130"	NA	inner
CUST_46600_PI429285431	4.9041476	P	4.009733	P	1.85885546744367	0	lncRNA	50782-1_{1..3000}	"gi|253735748|ref|NR_028028.1| Homo sapiens inositol 1,4,5-trisphosphate receptor interacting protein-like 2 (ITPRIPL2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|253735748|ref|NR_028028.1| Homo sapiens inositol 1,4,5-trisphosphate receptor interacting protein-like 2 (ITPRIPL2), transcript variant 2, non-coding RNA"	Chr16	 19125254	 19128253	+	162073	NR_028028.1	NA	NA	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90"	NA	inter
CUST_51118_PI429285431	0.9227346	A	0.9177082	A	1.0034901112929	0	lncRNA	54754-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00007006 range=chr13:111461359-111472540 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007006 range=chr13:111461359-111472540 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	111464359	111467358	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5013_PI429285431	6.995379	P	6.9370584	P	1.04125296231845	0	lncRNA	4953-1_{1..505}	"transcript_id ""ENST00000521256.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521256.1"" | genecode_v17"	chr14	101323961	101324465	+	ENSG00000214548.9	ENST00000521256.1	MEG3	MEG3-024	NA	NA	NA	inter
LNCA_21_P0013590	5.831456	P	5.108272	P	1.65082134783754	0	lncRNA	XR_108989	XR_108989	XR_108989	NA	NA	LOC100507540	uncharacterized LOC100507540	NA	THC2548824	NA	"PREDICTED: Homo sapiens hypothetical LOC100507540 (LOC100507540), miscRNA [XR_108989]"	chr9:74930313-74930372	hs|9q21.13	Agilent_HUMAN_G3V2	XR_108989	XR_108989	chr9	 74930313	 74930372	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014903	4.6591797	P	4.189188	P	1.38510149943065	0	lncRNA	XR_132900	XR_132900	XR_132900	NA	NA	LOC100507645	uncharacterized LOC100507645	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507645 (LOC100507645), miscRNA [XR_132900]"	chr11:65266912-65257446	hs|11q13.1	Agilent_HUMAN_G3V2	XR_132900	XR_132900	chr11	 65257446	 65266912	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39392_PI429285431	3.3134801	P	2.2745779	A	2.05466358881481	0	lncRNA	40355-1_{1..2373}	n386556|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010nxt.1||0.1320660|-0.2611077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386556|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010nxt.1||0.1320660|-0.2611077	chr1	    89294	    91666	-	NA	NA	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30"	NA	inter
CUST_34794_PI429285431	5.45356	P	5.324749	P	1.09339220845537	0	lncRNA	36231-1_{1..3000}	n341702|AK056407|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4174|NULL|0.7076470|-0.2732131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341702|AK056407|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4174|NULL|0.7076470|-0.2732131	chr9	 77591299	 77594298	-	NA	NA	NA	NA	C9orf41	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr9:77597873-77604871"	NA	inter
LNCA_21_P0006378	0.9357774	A	1.7172968	A	0.581753786120925	0	lncRNA	TCONS_00016750	NA	NA	NA	NA	XLOC_007662	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007662), lincRNA [TCONS_00016750]"	chr9:29212962-29197835	hs|9p21.1	Agilent_HUMAN_G3V2	TCONS_00016750	TCONS_00016750	chr9	 29197835	 29212962	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14209_PI429285431	0.92300516	A	0.9199107	A	1.00214721820272	0	lncRNA	15862-1_{1..525}	lnc-TES-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TES-1:2	chr7	115431072	115431596	+	lnc-TES-1	lnc-TES-1:2	XLOC_006216	linc-TES-1	NA	NA	NA	inter
CUST_44008_PI429285431	12.512232	P	11.977293	P	1.44888089170972	0	lncRNA	48699-1_{1..1059}	"gi|66472905|ref|NR_002315.1| Homo sapiens H3 histone, family 3A, pseudogene 4 (H3F3AP4), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|66472905|ref|NR_002315.1| Homo sapiens H3 histone, family 3A, pseudogene 4 (H3F3AP4), non-coding RNA"	Chr2	175584528	175585586	+	440926	NR_002315.1	NA	NA	NA	NA	NA	inter
CUST_26979_PI429285431	0.9221796	A	0.9236382	A	0.998989486435486	0	lncRNA	28505-1_{1..628}	n324067|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052660|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052660|-0.0638690|-0.2919336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324067|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052660|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052660|-0.0638690|-0.2919336	chr9	 74676463	 74677090	-	NA	NA	NA	NA	C9orf57	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00chr9:74666463-74675521"	NA	inter
CUST_35180_PI429285431	5.326731	P	5.8949757	P	0.674436864130544	0	lncRNA	36582-1_{1..575}	n342159|Y08266|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4646|NULL|1.8204200|-0.0305837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342159|Y08266|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4646|NULL|1.8204200|-0.0305837	chr6	157099085	157099659	+	NA	NA	NA	NA	ARID1B	NA	chr6:157099064-157109659	inner
CUST_15941_PI429285431	1.1798644	A	0.9121628	A	1.20388834908845	0	lncRNA	17638-1_{1..846}	lnc-ACTL8-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACTL8-1:2	chr1	 18048175	 18049020	+	lnc-ACTL8-1	lnc-ACTL8-1:2	XLOC_000070	linc-ACTL8	NA	NA	NA	inter
CUST_16235_PI429285431	0.9159883	A	0.9117992	A	1.00290788256629	0	lncRNA	17942-1_{1..868}	lnc-UCHL3-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UCHL3-7:1	chr13	 75018235	 75019102	+	lnc-UCHL3-7	lnc-UCHL3-7:1	XLOC_010428	linc-UCHL3-5	NA	NA	NA	inter
CUST_4071_PI429285431	2.0129247	A	2.1325853	A	0.920404154056967	0	lncRNA	4032-1_{1..620}	"transcript_id ""ENST00000534252.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534252.2"" | genecode_v17"	chr11	109622168	109622787	-	ENSG00000254659.2	ENST00000534252.2	RP11-262A12.1	RP11-262A12.1-001	NA	NA	NA	inter
CUST_41155_PI429285431	6.437683	P	6.4198813	P	1.01241564015724	0	lncRNA	41961-1_{1..81}	ENST00000579659 ncrna:miRNA chromosome:GRCh37:10:35930100:35930180:-1 gene:ENSG00000264780 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579659 ncrna:miRNA chromosome:GRCh37:10:35930100:35930180:-1 gene:ENSG00000264780 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 35930100	 35930180	-	ENSG00000264780	ENST00000579659	NA	NA	FZD8	NA	chr10:35927177-35930362	inter
CUST_20157_PI429285431	9.504085	P	9.352609	P	1.11070523710897	0	lncRNA	21802-1_{1..573}	lnc-TMEM159-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM159-1:1	chr16	 21217066	 21217638	+	lnc-TMEM159-1	lnc-TMEM159-1:1	ENSG00000262983.1	AF001550.7	ZP2	"hg19_refFlat_ZP2:range=chr16:21208801-212228685'pad=0,hg19_refFlat_ZP2:range=chr16:21208801-212228685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30chr16:21208773-21222868"	NA	inner
CUST_49116_PI429285431	2.4174852	A	3.8815067	A	0.362481306242209	0	lncRNA	52940-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00020549 range=chr4:63796124-63814906 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020549 range=chr4:63796124-63814906 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 63796124	 63799123	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46285_PI429285431	6.2836137	P	7.026547	P	0.59752322703153	0	lncRNA	50521-2_{3001..3236}	"gi|388452913|ref|NR_049767.1| Homo sapiens solute carrier family 7 (amino acid transporter light chain, L system), member 8 (SLC7A8), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388452913|ref|NR_049767.1| Homo sapiens solute carrier family 7 (amino acid transporter light chain, L system), member 8 (SLC7A8), transcript variant 5, non-coding RNA"	Chr14	 23597504	 23597739	-	23428	NR_049767.1	NA	NA	NA	NA	NA	inter
CUST_17645_PI429285431	2.626338	A	2.5253305	A	1.07252219242145	0	lncRNA	19374-1_{1..791}	lnc-TCF4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF4-4:1	chr18	 53735468	 53736258	-	lnc-TCF4-4	lnc-TCF4-4:1	XLOC_012851	linc-TCF4-3	NA	NA	NA	inter
CUST_36428_PI429285431	6.570143	P	7.000014	P	0.742328158351506	0	lncRNA	37642-1_{1..2937}	n344941|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_490|NULL|-1.5487900|-0.1737724	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344941|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_490|NULL|-1.5487900|-0.1737724	chr7	  5467806	  5470742	-	NA	NA	NA	NA	TNRC18	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80chr7:5457806-5463177"	NA	inter
CUST_34522_PI429285431	4.4366846	P	5.0146017	P	0.669930295576431	0	lncRNA	35986-1_{1..743}	n341401|BC017578|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3871|NULL|-0.9632870|-0.2133887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n341401|BC017578|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3871|NULL|-0.9632870|-0.2133887	chr8	  9046508	  9047250	+	NA	NA	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80"	NA	inter
CUST_1296_PI429285431	0.9032948	A	0.90080434	A	1.00172774616376	0	lncRNA	1286-1_{1..566}	"transcript_id ""ENST00000428171.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428171.1"" | genecode_v17"	chr3	  8121009	  8121574	+	ENSG00000228351.1	ENST00000428171.1	AC018832.1	AC018832.1-001	NA	NA	NA	inter
CUST_22219_PI429285431	0.91757274	A	1.4523369	A	0.69027150742299	0	lncRNA	23819-1_{1..536}	lnc-TSPYL6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSPYL6-2:1	chr2	 54767736	 54768271	-	lnc-TSPYL6-2	lnc-TSPYL6-2:1	ENSG00000228108.1	AC092839.3	SPTBN1	NA	chr2:54757736-54777834	inner
LNCA_21_P0008639	0.9236206	A	0.9244615	A	0.999417302370109	0	lncRNA	TCONS_00023434	NA	NA	NA	NA	XLOC_011275	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011275), lincRNA [TCONS_00023434]"	chr15:61703067-61703126	hs|15q22.2	Agilent_HUMAN_G3V2	TCONS_00023434	TCONS_00023434	chr15	 61703067	 61703126	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005421	3.3733883	P	3.1401987	P	1.17543079421371	0	lncRNA	TCONS_00013572	NA	NA	NA	NA	XLOC_006223	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006223), lincRNA [TCONS_00013572]"	chr7:123175367-123175426	hs|7q31.32	Agilent_HUMAN_G3V2	TCONS_00013572	TCONS_00013572	chr7	123175367	123175426	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002296	0.9254248	A	0.9248967	A	1.00036611803091	0	lncRNA	TCONS_00003886	NA	NA	NA	NA	XLOC_001690	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001690), lincRNA [TCONS_00003886]"	chr2:140019659-140019718	hs|2q22.1	Agilent_HUMAN_G3V2	TCONS_00003886	TCONS_00003886	chr2	140019659	140019718	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5243_PI429285431	1.4974474	A	2.1183875	A	0.650247070657506	0	lncRNA	5184-1_{1..724}	"transcript_id ""ENST00000602530.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602530.1"" | genecode_v17"	chr15	 76635983	 76636706	+	ENSG00000270036.1	ENST00000602530.1	RP11-685G9.4	RP11-685G9.4-001	SCAPER	NA	chr15:76640526-76646706	inter
CUST_17613_PI429285431	1.0667164	A	0.9069348	A	1.11711801221053	0	lncRNA	19337-2_{3001..4113}	lnc-CXCR3-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CXCR3-4:2	chrX	 71007123	 71008235	-	lnc-CXCR3-4	lnc-CXCR3-4:2	XLOC_008182	linc-CXorf49B-2	NA	NA	NA	inter
LNCA_21_P0007716	0.92716104	A	1.2304926	A	0.810378857311625	0	lncRNA	TCONS_00020820	NA	NA	NA	NA	XLOC_010106	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010106), lincRNA [TCONS_00020820]"	chr12:63684135-63684076	hs|12q14.2	Agilent_HUMAN_G3V2	TCONS_00020820	TCONS_00020820	chr12	 63684076	 63684135	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27469_PI429285431	0.91815877	A	0.92411596	A	0.995879304010803	0	lncRNA	29040-1_{1..741}	n324646|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317435|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317435|-0.8750470|-0.4082473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324646|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317435|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317435|-0.8750470|-0.4082473	chr22	 48195428	 48196168	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46108_PI429285431	6.4718714	P	6.412951	P	1.0416859529048	0	lncRNA	50370-1_{1..1827}	"gi|291490692|ref|NR_033410.1| Homo sapiens makorin ring finger protein 9, pseudogene (MKRN9P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|291490692|ref|NR_033410.1| Homo sapiens makorin ring finger protein 9, pseudogene (MKRN9P), non-coding RNA"	Chr12	 88176662	 88178488	-	400058	NR_033410.1	NA	NA	NA	NA	NA	inter
CUST_38182_PI429285431	0.9036789	A	0.90537673	A	0.998823846134206	0	lncRNA	39249-1_{1..1299}	n381442|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jcb.1||2.3160800|-0.3672976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381442|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jcb.1||2.3160800|-0.3672976	chr10	 45650109	 45651407	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_125_PI429285431	1.7634994	A	1.697446	A	1.04684902938967	0	lncRNA	117-1_{1..417}	"transcript_id ""ENST00000443772.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443772.1"" | genecode_v17"	chr1	   740179	   740595	+	ENSG00000237491.3	ENST00000443772.1	RP11-206L10.9	RP11-206L10.9-014	NA	NA	NA	inter
LNCA_21_P0010196	0.9267531	A	0.92046446	A	1.00436846714031	0	lncRNA	ENST00000435878	NA	NA	NA	NA	XLOC_014041	NA	ENST00000435878	THC2718390	NA	"BROAD Institute lincRNA (XLOC_014041), lincRNA [TCONS_00028905]"	chr21:27722162-27722103	hs|21q21.3	Agilent_HUMAN_G3V2	ENST00000435878	ENST00000435878	chr21	 27722103	 27722162	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20936_PI429285431	4.018022	P	3.8432746	P	1.12876675288635	0	lncRNA	22567-1_{1..632}	lnc-IFIT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IFIT2-1:1	chr10	 91051744	 91052375	+	lnc-IFIT2-1	lnc-IFIT2-1:1	ENSG00000232110.2	RP11-149I23.3	IFIT2	NA	chr10:91061706-91061748	inter
CUST_8151_PI429285431	0.9196432	A	0.91970277	A	0.999958710074906	0	lncRNA	9754-1_{1..1578}	lnc-EEFSEC-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EEFSEC-3:2	chr3	128220452	128222029	+	lnc-EEFSEC-3	lnc-EEFSEC-3:2	ENSG00000244300	RP11-475N22.4	GATA2	NA	chr3:128210452-128212030	inter
CUST_19773_PI429285431	0.926231	A	0.93010056	A	0.997321419212497	0	lncRNA	21431-1_{1..971}	lnc-SAP30-5:32	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:32	chr4	174457999	174458969	+	lnc-SAP30-5	lnc-SAP30-5:32	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174447999-174451378	inter
CUST_9699_PI429285431	0.90045315	A	0.895567	A	1.00339256285514	0	lncRNA	11215-1_{1..540}	lnc-FNDC1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FNDC1-3:1	chr6	159536464	159537003	+	lnc-FNDC1-3	lnc-FNDC1-3:1	XLOC_005520	linc-FNDC1-3	NA	NA	NA	inter
CUST_13712_PI429285431	0.9211922	A	0.92248094	A	0.999107112364134	0	lncRNA	15351-1_{1..365}	lnc-CELF4-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CELF4-5:1	chr18	 36477387	 36477751	-	lnc-CELF4-5	lnc-CELF4-5:1	XLOC_012823	linc-CELF4-2	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40"	NA	inter
CUST_41871_PI429285431	0.9191312	A	0.922753	A	0.997492708061821	0	lncRNA	43534-1_{1..97}	ENST00000385217 ncrna:miRNA chromosome:GRCh37:14:31483852:31483948:-1 gene:ENSG00000207952 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385217 ncrna:miRNA chromosome:GRCh37:14:31483852:31483948:-1 gene:ENSG00000207952 gene_biotype:miRNA transcript_biotype:miRNA	chr14	 31483852	 31483948	-	ENSG00000207952	ENST00000385217	NA	NA	STRN3	NA	chr14:31473852-31493948	inner
CUST_18703_PI429285431	0.9258961	A	0.899805	A	1.01824949582008	0	lncRNA	20401-1_{1..2539}	lnc-YBEY-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-YBEY-2:1	chr21	 47669500	 47672038	+	lnc-YBEY-2	lnc-YBEY-2:1	ENSG00000215424	MCM3AP-AS1	MCM3AP	"hg19_refFlat_MCM3AP:range=chr21:47655182-477052005'pad=0,hg19_refFlat_MCM3AP:range=chr21:47655182-477052005'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00chr21:47659500-47681615"	NA	inner
CUST_39017_PI429285431	0.8983698	A	1.4212484	A	0.695981758971718	0	lncRNA	39996-1_{1..1016}	n385351|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wtt.1||4.9043000|-0.1280762	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385351|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wtt.1||4.9043000|-0.1280762	chr8	 11213613	 11214628	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42002_PI429285431	2.5059524	A	2.5272272	A	0.985361630488298	0	lncRNA	43843-1_{1..68}	ENST00000362232 ncrna:miRNA chromosome:GRCh37:4:113569519:113569586:-1 gene:ENSG00000199102 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362232 ncrna:miRNA chromosome:GRCh37:4:113569519:113569586:-1 gene:ENSG00000199102 gene_biotype:miRNA transcript_biotype:miRNA	chr4	113569519	113569586	-	ENSG00000199102	ENST00000362232	NA	NA	LARP7	NA	chr4:113559519-113578742	inner
CUST_20327_PI429285431	5.9824605	P	6.5469546	P	0.67619249073969	0	lncRNA	21970-1_{1..347}	lnc-NRIP2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NRIP2-1:3	chr12	  2921385	  2921731	-	lnc-NRIP2-1	lnc-NRIP2-1:3	ENSG00000258325.1	RP4-816N1.6	ITFG2	NA	chr12:2921787-2931547	inter
CUST_13247_PI429285431	0.9048775	A	0.9031904	A	1.00117009263318	0	lncRNA	14877-1_{1..1974}	lnc-ATOH8-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATOH8-2:10	chr2	 86130995	 86132968	+	lnc-ATOH8-2	lnc-ATOH8-2:10	XLOC_001558	linc-PTCD3-2	NA	NA	NA	inter
LNCA_21_P0003817	2.6611242	A	3.1226666	P	0.726209445550955	0	lncRNA	TCONS_00008697	NA	NA	NA	NA	XLOC_004211	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004211), lincRNA [TCONS_00008697]"	chr4:186491393-186491334	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00008697	TCONS_00008697	chr4	186491334	186491393	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002405	0.9192298	A	0.907389	A	1.00824119031723	0	lncRNA	TCONS_00004152	NA	NA	NA	NA	XLOC_001992	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001992), lincRNA [TCONS_00004152]"	chr2:13141722-13141663	hs|2p24.3	Agilent_HUMAN_G3V2	TCONS_00004152	TCONS_00004152	chr2	 13141663	 13141722	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31292_PI429285431	4.6946898	P	3.7735348	P	1.89363069908575	0	lncRNA	33079-2_{3001..6000}	n337752|D87445|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|134|NULL|16.8115000|-0.3645683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337752|D87445|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|134|NULL|16.8115000|-0.3645683	chr15	 49283966	 49286965	-	NA	NA	NA	NA	SECISBP2L	NA	chr15:49280835-49338760	inner
LNCA_21_P0007679	3.7460504	P	4.054755	P	0.807366370429423	0	lncRNA	BX648417	NA	BX648417	NA	Hs.504534	EFCAB4B	EF-hand calcium binding domain 4B	NA	THC2571676	GO:0005515|GO:0032237|GO:0005737|GO:0005794|GO:0002115|GO:0051928|GO:0005509|GO:0005730|GO:0005634|GO:0006811	"BROAD Institute lincRNA (XLOC_009982), lincRNA [TCONS_00020677]"	chr12:3865803-3865744	hs|12p13.32	Agilent_HUMAN_G3V2	BX648417	BX648417	chr12	  3865744	  3865803	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8708_PI429285431	0.92836416	A	0.9344101	A	0.995818042574933	0	lncRNA	10252-1_{1..2021}	lnc-EIF3F-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-EIF3F-1:2	chr11	  8089157	  8091177	+	lnc-EIF3F-1	lnc-EIF3F-1:2	ENSG00000248332	ENSG00000248332.2	TUB	NA	chr11:8079157-8100920	inner
CUST_37000_PI429285431	1.1848077	A	0.92097104	A	1.2006674818256	0	lncRNA	38142-1_{1..3000}	n345458|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1007|NULL|-1.6712700|-0.3891479	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345458|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1007|NULL|-1.6712700|-0.3891479	chr1	118379075	118382074	-	NA	NA	NA	NA	GDAP2	NA	chr1:118406107-118410566	inter
CUST_16357_PI429285431	2.3712146	A	2.62014	A	0.841522995287519	0	lncRNA	18056-2_{3001..6000}	lnc-FANCI-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-FANCI-2:7	chr15	 89941259	 89944258	+	lnc-FANCI-2	lnc-FANCI-2:7	XLOC_011345	linc-C15orf42-2	NA	NA	NA	inter
LNCA_21_P0012022	2.6466923	A	0.9043764	A	3.34571811527293	0	lncRNA	BX538202	NA	BX538202	NA	Hs.587092	XLOC_l2_007543	NA	NA	THC2501290	NA	"BROAD Institute lincRNA (XLOC_l2_007543), lincRNA [TCONS_l2_00015477]"	chr2:128157522-128157581	hs|2q14.3	Agilent_HUMAN_G3V2	BX538202	BX538202	chr2	128157522	128157581	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004208	4.5871253	P	4.3789897	P	1.15519435704399	0	lncRNA	TCONS_00009846	NA	NA	NA	NA	XLOC_004258	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004258), lincRNA [TCONS_00009846]"	chr5:3043008-3043067	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00009846	TCONS_00009846	chr5	  3043008	  3043067	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22969_PI429285431	2.0047784	A	2.6831863	A	0.624854458255515	0	lncRNA	24543-1_{1..600}	lnc-SHISA4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHISA4-1:2	chr1	201868858	201869457	+	lnc-SHISA4-1	lnc-SHISA4-1:2	ENSG00000223774.1	RP11-307B6.3	LMOD1	"hg19_refFlat_LMOD1:range=chr1:201867500-2019154685'pad=0,hg19_refFlat_LMOD1:range=chr1:201867500-2019154685'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20chr1:201865584-201879106"	NA	inner
CUST_41258_PI429285431	0.9133076	A	0.9070393	A	1.00435430703714	0	lncRNA	42220-1_{1..95}	ENST00000385103 ncrna:miRNA chromosome:GRCh37:19:54244567:54244661:1 gene:ENSG00000207838 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385103 ncrna:miRNA chromosome:GRCh37:19:54244567:54244661:1 gene:ENSG00000207838 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54244567	 54244661	+	ENSG00000207838	ENST00000385103	NA	NA	NA	NA	NA	inter
LNCA_21_P0009291	0.91411424	A	0.90162635	A	1.00869351676902	0	lncRNA	TCONS_00025540	NA	NA	NA	NA	XLOC_012367	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012367), lincRNA [TCONS_00025540]"	chr17:6070301-6070242	hs|17p13.2	Agilent_HUMAN_G3V2	TCONS_00025540	TCONS_00025540	chr17	  6070242	  6070301	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19276_PI429285431	4.2654676	P	4.808889	P	0.686141769680493	0	lncRNA	20944-1_{1..475}	lnc-USP20-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP20-1:1	chr9	132677528	132678002	+	lnc-USP20-1	lnc-USP20-1:1	ENSG00000225425.1	RP11-409K20.8	FNBP1	NA	chr9:132667528-132687715	inner
CUST_25084_PI429285431	0.9104911	A	0.9132483	A	0.998090679669295	0	lncRNA	26621-1_{1..302}	lnc-GPER-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPER-1:1	chr7	  1121574	  1121875	+	lnc-GPER-1	lnc-GPER-1:1	ENSG00000226291.1	AC091729.8	C7orf50	NA	chr7:1111574-1131814	inner
CUST_42022_PI429285431	4.7019825	P	2.991817	A	3.27198356110557	0	lncRNA	43891-1_{1..91}	ENST00000580734 ncrna:miRNA chromosome:GRCh37:1:182928620:182928710:-1 gene:ENSG00000264768 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580734 ncrna:miRNA chromosome:GRCh37:1:182928620:182928710:-1 gene:ENSG00000264768 gene_biotype:miRNA transcript_biotype:miRNA	chr1	182928620	182928710	-	ENSG00000264768	ENST00000580734	NA	NA	SHCBP1L	NA	chr1:182918620-182922553	inter
LNCA_21_P0014830	0.91240215	A	0.9299197	A	0.987931179148383	0	lncRNA	XR_132682	XR_132682	XR_132682	NA	NA	LOC100652925	uncharacterized LOC100652925	ENST00000504335	THC2492333	NA	"PREDICTED: Homo sapiens hypothetical LOC100652925 (LOC100652925), miscRNA [XR_132682]"	chr22:31499262-31499321	hs|22q12.2	Agilent_HUMAN_G3V2	XR_132682	XR_132682	chr22	 31499262	 31499321	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30427_PI429285431	9.259787	P	9.244547	P	1.0106195544463	0	lncRNA	32207-1_{1..305}	n335562|CR450358|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267267|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267267|1.0448100|-0.1995245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335562|CR450358|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267267|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267267|1.0448100|-0.1995245	chr12	 15035076	 15035380	-	NA	NA	NA	NA	MGP	NA	chr12:15034115-15038853	inner
CUST_16030_PI429285431	0.9088174	A	0.8998546	A	1.00623187739873	0	lncRNA	17727-1_{1..347}	lnc-SEC62-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEC62-1:1	chr3	169684414	169684760	+	lnc-SEC62-1	lnc-SEC62-1:1	XLOC_002916	linc-SEC62	SEC62	NA	chr3:169684580-169694501	inter
CUST_13755_PI429285431	0.8990883	A	1.1534691	A	0.838346873203232	0	lncRNA	15400-1_{1..665}	lnc-UTP23-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UTP23-2:1	chr8	117587262	117587926	+	lnc-UTP23-2	lnc-UTP23-2:1	XLOC_006904	linc-UTP23-2	NA	NA	NA	inter
CUST_21778_PI429285431	1.9962096	A	1.0097723	A	1.98128620698256	0	lncRNA	23388-1_{1..423}	lnc-TEX261-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TEX261-1:1	chr2	 71221818	 71222240	-	lnc-TEX261-1	lnc-TEX261-1:1	ENSG00000258881.1	AC007040.11	TEX261	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10chr2:71213068-71222001"	NA	inner
CUST_27144_PI429285431	4.601505	P	4.645917	P	0.969684951428393	0	lncRNA	28680-1_{1..1013}	n324260|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322893|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322893|-1.0188700|-0.0976829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324260|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322893|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322893|-1.0188700|-0.0976829	chr7	  1715249	  1716261	+	NA	NA	NA	NA	ELFN1	NA	chr7:1748798-1761313	inner
CUST_39625_PI429285431	0.90897256	A	1.0916529	A	0.881064571236108	0	lncRNA	40564-1_{1..1447}	n387742|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011mob.1||3.7619100|-0.2168402	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387742|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011mob.1||3.7619100|-0.2168402	chrX	 52651984	 52653430	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1447_PI429285431	0.91873574	A	0.9178036	A	1.00064631898705	0	lncRNA	1436-1_{1..675}	"transcript_id ""ENST00000472323.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000472323.1"" | genecode_v17"	chr3	114819270	114819944	+	ENSG00000242767.1	ENST00000472323.1	ZBTB20-AS4	ZBTB20-AS4-001	ZBTB20	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-22.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50chr3:114809270-114831908"	NA	inner
LNCA_21_P0005536	0.9125314	A	0.900074	A	1.00867219920746	0	lncRNA	TCONS_00013993	NA	NA	NA	NA	XLOC_006637	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006637), lincRNA [TCONS_00013993]"	chr7:148241374-148241315	hs|7q36.1	Agilent_HUMAN_G3V2	TCONS_00013993	TCONS_00013993	chr7	148241315	148241374	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21108_PI429285431	2.845147	A	2.9334579	A	0.940623381841557	0	lncRNA	22733-1_{1..974}	lnc-TRAPPC12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRAPPC12-1:1	chr2	  3526677	  3527650	+	lnc-TRAPPC12-1	lnc-TRAPPC12-1:1	ENSG00000235078.1	AC142528.1	ADI1	"hg19_refFlat_ADI1:range=chr2:3502734-35232585'pad=0,hg19_refFlat_ADI1:range=chr2:3502734-35232585'pad=0 3'pad=0 strand=- repeatMasking=none,-108.10chr2:3516677-3523350"	NA	inter
CUST_24314_PI429285431	1.2191045	A	0.9019494	A	1.24587134842014	0	lncRNA	25865-1_{1..239}	lnc-SEPT11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SEPT11-1:1	chr4	 77565428	 77565666	+	lnc-SEPT11-1	lnc-SEPT11-1:1	ENSG00000231335.1	AC107072.2	SHROOM3	NA	chr4:77555428-77575521	inner
CUST_15341_PI429285431	3.5667176	P	3.8329184	P	0.83150635797793	0	lncRNA	17020-1_{1..310}	lnc-NTRK2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTRK2-4:1	chr9	 88069243	 88069552	+	lnc-NTRK2-4	lnc-NTRK2-4:1	XLOC_007432	linc-NAA35-2	NA	NA	NA	inter
CUST_16704_PI429285431	1.333703	A	1.3317094	A	1.00138281342517	0	lncRNA	18410-1_{1..240}	lnc-MGST1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MGST1-2:1	chr12	 16902727	 16902966	+	lnc-MGST1-2	lnc-MGST1-2:1	XLOC_009678	linc-PIK3C2G-1	NA	NA	NA	inter
LNCA_21_P0007024	0.91482055	A	0.9026228	A	1.0084906790923	0	lncRNA	TCONS_00018618	NA	NA	NA	NA	XLOC_008968	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008968), lincRNA [TCONS_00018618]"	chr10:121861866-121861807	hs|10q26.12	Agilent_HUMAN_G3V2	TCONS_00018618	TCONS_00018618	chr10	121861807	121861866	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38325_PI429285431	0.9248596	A	0.9262055	A	0.999067528231935	0	lncRNA	39371-1_{1..811}	n382041|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vee.1||0.3645110|-0.2957039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382041|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vee.1||0.3645110|-0.2957039	chr13	 50656413	 50657223	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11554_PI429285431	2.6867638	A	3.3675697	P	0.623816708528894	0	lncRNA	13128-1_{1..347}	lnc-RALGPS2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RALGPS2-2:1	chr1	178631318	178631664	+	lnc-RALGPS2-2	lnc-RALGPS2-2:1	XLOC_000474	linc-RALGPS2-2	NA	NA	NA	inter
CUST_18060_PI429285431	0.8936324	A	0.8933369	A	1.00020484596993	0	lncRNA	19795-1_{1..279}	lnc-AL445989.1-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL445989.1-9:1	chr13	 66510419	 66510697	+	lnc-AL445989.1-9	lnc-AL445989.1-9:1	XLOC_010414	linc-C13orf34-11	NA	NA	NA	inter
CUST_17446_PI429285431	2.3614745	A	1.6177768	A	1.67446207416291	0	lncRNA	19169-2_{3001..4731}	lnc-C5orf39-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf39-1:10	chr5	 43019464	 43021194	-	lnc-C5orf39-1	lnc-C5orf39-1:10	XLOC_004804	linc-SEPP1-1	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-95.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.41;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10"	NA	inter
CUST_8831_PI429285431	0.904306	A	0.9782097	A	0.950063797586701	0	lncRNA	10372-1_{1..1862}	lnc-PHACTR4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHACTR4-1:2	chr1	 28829010	 28830871	+	lnc-PHACTR4-1	lnc-PHACTR4-1:2	ENSG00000245460	ENST00000496998	RCC1	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.01;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.81;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70chr1:28832455-28839283"	NA	inter
CUST_12853_PI429285431	3.0439935	A	3.2881002	P	0.844338438853251	0	lncRNA	14479-1_{1..752}	lnc-STX2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STX2-6:1	chr12	131896666	131897417	-	lnc-STX2-6	lnc-STX2-6:1	XLOC_010268	linc-STX2-7	NA	NA	NA	inter
CUST_25816_PI429285431	2.8442879	A	0.9126152	A	3.81497261233995	0	lncRNA	27337-1_{1..1771}	lnc-C7orf11-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C7orf11-3:1	chr7	 40586313	 40588083	-	lnc-C7orf11-3	lnc-C7orf11-3:1	ENSG00000203446.2	AC004988.1	C7orf10	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-63.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70chr7:40576313-40596527"	NA	inner
CUST_40159_PI429285431	3.325955	P	4.150497	P	0.564661432165986	0	lncRNA	40996-1_{1..3000}	n407852|NR_027407|lncRNA|Homosapiens||RefGeneNoncode|NR_027407||10.9225000|-0.2972026	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407852|NR_027407|lncRNA|Homosapiens||RefGeneNoncode|NR_027407||10.9225000|-0.2972026	chr15	 22702284	 22705283	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010403	4.225591	P	4.0339246	P	1.14208212820915	0	lncRNA	THC2519238	NA	NA	NA	NA	XLOC_014192	NA	NA	THC2519238	NA	"BROAD Institute lincRNA (XLOC_014192), lincRNA [TCONS_00029548]"	chr22:027089716-027089775	hs|22q12.1	Agilent_HUMAN_G3V2	THC2519238	THC2519238	chr22	 27089716	 27089775	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30078_PI429285431	1.215065	A	0.92316484	A	1.22425166658332	0	lncRNA	31848-1_{1..424}	n334597|U79029|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221460_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221460_07|-1.2754900|-0.3552551	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334597|U79029|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221460_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221460_07|-1.2754900|-0.3552551	chr6	  2834161	  2834584	-	NA	NA	NA	NA	SERPINB1	NA	chr6:2833733-2842081	inter
CUST_42139_PI429285431	0.92051536	A	0.90914685	A	1.00791117996595	0	lncRNA	44156-1_{1..89}	ENST00000385128 ncrna:miRNA chromosome:GRCh37:21:17962557:17962645:1 gene:ENSG00000207863 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385128 ncrna:miRNA chromosome:GRCh37:21:17962557:17962645:1 gene:ENSG00000207863 gene_biotype:miRNA transcript_biotype:miRNA	chr21	 17962557	 17962645	+	ENSG00000207863	ENST00000385128	NA	NA	NA	NA	NA	inter
LNCA_19_P00316528	4.3425736	P	4.865667	P	0.695878143343331	0	lncRNA	TCONS_00025346	NA	NA	NA	NA	XLOC_012166	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012166), lincRNA [TCONS_00025346]"	chr17:29939656-29939715	hs|17q11.2	Agilent_HUMAN_G3V2	TCONS_00025346	TCONS_00025346	chr17	 29939656	 29939715	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19666_PI429285431	1.0904158	A	0.9196467	A	1.12565841269706	0	lncRNA	21322-1_{1..1722}	lnc-TERF1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TERF1-3:1	chr8	 73662482	 73664203	+	lnc-TERF1-3	lnc-TERF1-3:1	ENSG00000253726.1	RP11-313C15.1	KCNB2	NA	chr8:73652482-73674078	inner
CUST_22090_PI429285431	0.9080907	A	0.9018878	A	1.00430877885479	0	lncRNA	23695-1_{1..439}	lnc-RNF20-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF20-1:3	chr9	104243645	104244083	+	lnc-RNF20-1	lnc-RNF20-1:3	ENSG00000225376.1	RP11-490D19.6	C9orf125	NA	chr9:104237608-104249475	inner
CUST_18013_PI429285431	0.90932727	A	0.90248203	A	1.00475603299838	0	lncRNA	19746-1_{1..657}	lnc-AIMP1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AIMP1-1:5	chr4	107378159	107378815	+	lnc-AIMP1-1	lnc-AIMP1-1:5	XLOC_003636	linc-SGMS2-3	NA	NA	NA	inter
CUST_3546_PI429285431	1.3493766	A	0.89757186	A	1.36775017470658	0	lncRNA	3516-1_{1..141}	"transcript_id ""ENST00000599815.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599815.1"" | genecode_v17"	chr9	132090540	132090680	+	ENSG00000268615.1	ENST00000599815.1	RP11-65J3.15	RP11-65J3.15-001	C9orf106	NA	chr9:132083295-132084882	inter
CUST_2720_PI429285431	3.6288655	P	3.5685105	P	1.04272230908594	0	lncRNA	2705-1_{1..393}	"transcript_id ""ENST00000413324.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413324.1"" | genecode_v17"	chr6	169467913	169468305	+	ENSG00000234519.1	ENST00000413324.1	RP3-495K2.1	RP3-495K2.1-001	NA	NA	NA	inter
CUST_23319_PI429285431	12.932465	P	12.709967	P	1.16675204826927	0	lncRNA	24890-1_{1..233}	lnc-SCN4B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SCN4B-1:2	chr11	117957466	117957698	-	lnc-SCN4B-1	lnc-SCN4B-1:2	ENSG00000255274.3	RP11-652L8.2	TMPRSS4	NA	chr11:117947727-117967508	inner
CUST_40993_PI429285431	0.9138476	A	0.9121809	A	1.00115593598544	0	lncRNA	41661-1_{1..746}	n411155|NR_038983|lncRNA|Homosapiens||RefGeneNoncode|NR_038983||-0.8210280|-0.1458631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n411155|NR_038983|lncRNA|Homosapiens||RefGeneNoncode|NR_038983||-0.8210280|-0.1458631	chr2	166790366	166791111	+	NA	NA	NA	NA	TTC21B	NA	chr2:166780366-166810348	inner
CUST_19410_PI429285431	2.2064242	A	2.8408074	A	0.644216179679427	0	lncRNA	21072-1_{1..385}	lnc-TAS2R42-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TAS2R42-1:1	chr12	 11323866	 11324250	-	lnc-TAS2R42-1	lnc-TAS2R42-1:1	ENSG00000256712.1	RP11-785H5.2	NA	NA	NA	inter
CUST_1321_PI429285431	0.9269662	A	0.9155977	A	1.00791117297964	0	lncRNA	1310-1_{1..584}	"transcript_id ""ENST00000455576.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455576.1"" | genecode_v17"	chr3	 24729410	 24729993	+	ENSG00000237838.1	ENST00000455576.1	AC133680.1	AC133680.1-001	NA	NA	NA	inter
LNCA_24_P829183	4.4612374	P	3.783395	P	1.59974549092949	0	lncRNA	XR_108575	XR_108575	XR_108575	   643977	Hs.535791	FLJ32255	uncharacterized LOC643977	NA	THC2604473	NA	"PREDICTED: Homo sapiens hypothetical LOC643977 (FLJ32255), miscRNA [XR_108575]"	chr5:42991176-42991117	hs|5p12	Agilent_HUMAN_G3V2	XR_108575	XR_108575	chr5	 42991117	 42991176	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5493_PI429285431	1.9395856	A	2.367715	A	0.743224826979223	0	lncRNA	5425-1_{1..358}	"transcript_id ""ENST00000568972.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568972.1"" | genecode_v17"	chr16	 32660514	 32660871	+	ENSG00000261569.1	ENST00000568972.1	RP11-586K12.11	RP11-586K12.11-002	NA	NA	NA	inter
CUST_20764_PI429285431	5.1583557	P	4.329901	P	1.77578226679089	0	lncRNA	22397-1_{1..440}	lnc-TAF4B-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TAF4B-8:1	chr18	 25543350	 25543789	+	lnc-TAF4B-8	lnc-TAF4B-8:1	ENSG00000227279.1	AC015933.2	CDH2	"hg19_refFlat_CDH2:range=chr18:25532117-257569865'pad=0,hg19_refFlat_CDH2:range=chr18:25532117-257569865'pad=0 3'pad=0 strand=- repeatMasking=none,-96.40chr18:25533350-25553651"	NA	inner
CUST_28367_PI429285431	1.3604014	A	1.4631029	A	0.931287487407566	0	lncRNA	30017-1_{1..890}	n325679|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045385|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045385|-0.0227332|-0.4018534	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325679|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045385|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045385|-0.0227332|-0.4018534	chr13	 79344721	 79345610	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10"	NA	inter
CUST_50767_PI429285431	11.0627	P	10.951118	P	1.08041232285869	0	lncRNA	54429-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00004571 range=chr11:65266513-65273999 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004571 range=chr11:65266513-65273999 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65266513	 65269512	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013867	0.96365535	A	0.91806775	A	1.03210346251423	0	lncRNA	ENST00000435565	NA	NA	NA	NA	XLOC_l2_015800	NA	ENST00000435565	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015800), lincRNA [TCONS_l2_00030845]"	chrX:115804204-115803865	hs|Xq23	Agilent_HUMAN_G3V2	ENST00000435565	ENST00000435565	chrX	115803865	115804204	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48057_PI429285431	4.365843	P	4.651081	P	0.820606223031793	0	lncRNA	51934-1_{1..586}	"gi|341914392|ref|XR_133296.1| PREDICTED: Homo sapiens uncharacterized LOC100507562 (LOC100507562), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|341914392|ref|XR_133296.1| PREDICTED: Homo sapiens uncharacterized LOC100507562 (LOC100507562), misc_RNA"	NA	NA	NA	NA	NA	XR_133296.1	NA	NA	NA	NA	NA	Unknown
CUST_13423_PI429285431	4.112343	P	3.921672	P	1.14129441048225	0	lncRNA	15061-1_{1..272}	lnc-NTRK2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTRK2-3:1	chr9	 87112384	 87112655	+	lnc-NTRK2-3	lnc-NTRK2-3:1	XLOC_007428	linc-NTRK2-4	NA	NA	NA	inter
CUST_28000_PI429285431	1.6454425	A	2.015667	A	0.773662096651739	0	lncRNA	29609-1_{1..577}	n325254|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329815|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329815|-0.3172580|-0.3483202	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325254|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329815|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329815|-0.3172580|-0.3483202	chr2	 70483569	 70484145	+	NA	NA	NA	NA	SNRPG	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60chr2:70508510-70513314"	NA	inner
CUST_50577_PI429285431	6.5424576	P	6.7127886	P	0.888638775856363	0	lncRNA	54270-1_{1..448}	hg19_lincRNAsTranscripts_TCONS_l2_00030954 range=chrY:28483532-28500466 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030954 range=chrY:28483532-28500466 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrY	 28483532	 28483979	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41549_PI429285431	1.1104882	A	1.6473105	A	0.689287472350914	0	lncRNA	42834-1_{1..74}	ENST00000579801 ncrna:miRNA chromosome:GRCh37:9:18573304:18573377:1 gene:ENSG00000264638 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579801 ncrna:miRNA chromosome:GRCh37:9:18573304:18573377:1 gene:ENSG00000264638 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 18573304	 18573377	+	ENSG00000264638	ENST00000579801	NA	NA	ADAMTSL1	NA	chr9:18563304-18583377	inner
CUST_19910_PI429285431	0.90252054	A	0.92325675	A	0.985729556474029	0	lncRNA	21565-1_{1..487}	lnc-ATP6AP1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ATP6AP1L-1:1	chr5	 81287814	 81288300	+	lnc-ATP6AP1L-1	lnc-ATP6AP1L-1:1	ENSG00000236447.2	ATG10-IT1	ATG10	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr5:81277814-81298300"	NA	inner
CUST_24254_PI429285431	3.9742694	P	3.8415363	P	1.09636874053076	0	lncRNA	25805-1_{1..846}	lnc-MNT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MNT-1:1	chr17	  2282440	  2283285	-	lnc-MNT-1	lnc-MNT-1:1	ENSG00000263345.1	RP1-59D14.5	MNT	"hg19_refFlat_SGSM2:range=chr17:2240983-22828145'pad=0,hg19_refFlat_SGSM2:range=chr17:2240983-22828145'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.60chr17:2287354-2292600"	NA	inner
CUST_28528_PI429285431	0.89990747	A	1.0303189	A	0.913570879521758	0	lncRNA	30199-1_{1..556}	n325876|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050590|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050590|-1.0438000|-0.3850535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325876|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050590|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050590|-1.0438000|-0.3850535	chr10	119991153	119991708	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41571_PI429285431	0.90136135	A	0.9094511	A	0.994408304648641	0	lncRNA	42890-1_{1..68}	ENST00000579525 ncrna:miRNA chromosome:GRCh37:11:9111859:9111926:-1 gene:ENSG00000264984 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579525 ncrna:miRNA chromosome:GRCh37:11:9111859:9111926:-1 gene:ENSG00000264984 gene_biotype:miRNA transcript_biotype:miRNA	chr11	  9111859	  9111926	-	ENSG00000264984	ENST00000579525	NA	NA	SCUBE2	NA	chr11:9101859-9113150	inner
CUST_4355_PI429285431	8.032981	P	7.787717	P	1.1853096519248	0	lncRNA	4310-1_{1..450}	"transcript_id ""ENST00000550014.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550014.1"" | genecode_v17"	chr12	 86993355	 86993804	-	ENSG00000258185.2	ENST00000550014.1	RP11-202H2.1	RP11-202H2.1-001	MGAT4C	NA	chr12:86983355-87232681	inner
CUST_17707_PI429285431	2.5410485	A	1.1975174	A	2.53771683760314	0	lncRNA	19438-1_{1..1761}	lnc-BCL2L10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BCL2L10-1:1	chr15	 52408383	 52410143	-	lnc-BCL2L10-1	lnc-BCL2L10-1:1	XLOC_011480	linc-BCL2L10	GNB5	NA	chr15:52413123-52419155	inter
LNCA_21_P0003565	1.0017416	A	1.1502081	A	0.902208948176965	0	lncRNA	TCONS_00007971	NA	NA	NA	NA	XLOC_003440	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003440), lincRNA [TCONS_00007971]"	chr4:6692380-6692439	hs|4p16.1	Agilent_HUMAN_G3V2	TCONS_00007971	TCONS_00007971	chr4	  6692380	  6692439	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50659_PI429285431	4.812314	P	5.001903	P	0.876855487389764	0	lncRNA	54335-1_{1..863}	hg19_lincRNAsTranscripts_TCONS_l2_00003950 range=chr10:38742266-38764837 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003950 range=chr10:38742266-38764837 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 38742266	 38743128	+	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.30"	NA	inter
LNCA_21_P0005615	1.8205913	A	2.5900424	A	0.586640630434683	0	lncRNA	BC031939	NA	BC031939	NA	Hs.127775	XLOC_006775	NA	ENST00000523507	THC2710632	NA	"BROAD Institute lincRNA (XLOC_006775), lincRNA [TCONS_00014488]"	chr8:37590949-37591008	hs|8p11.23	Agilent_HUMAN_G3V2	BC031939	BC031939	chr8	 37590949	 37591008	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18621_PI429285431	4.557604	P	5.697667	P	0.453739763194385	0	lncRNA	20326-2_{3001..3133}	lnc-TUBGCP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUBGCP2-1:1	chr10	135093276	135093408	-	lnc-TUBGCP2-1	lnc-TUBGCP2-1:1	ENSG00000151651	ADAM8	ADAM8	NA	chr10:135080276-135090407	inner
CUST_22442_PI429285431	0.9294093	A	1.066652	A	0.909255277809319	0	lncRNA	24029-1_{1..613}	lnc-MNX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-MNX1-2:1	chr7	157532978	157533590	-	lnc-MNX1-2	lnc-MNX1-2:1	ENSG00000231515.1	AC006003.3	PTPRN2	NA	chr7:157522978-157543148	inner
CUST_39535_PI429285431	2.5850968	A	2.1632702	A	1.33962258120765	0	lncRNA	40480-1_{1..1588}	n387413|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011dry.1||-0.7380920|-0.1450988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387413|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011dry.1||-0.7380920|-0.1450988	chr6	 33862915	 33864502	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23469_PI429285431	0.89334786	A	0.89385134	A	0.999651075145973	0	lncRNA	25036-1_{1..474}	lnc-WDFY4-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDFY4-3:3	chr10	 50349298	 50349771	+	lnc-WDFY4-3	lnc-WDFY4-3:3	ENSG00000234736.1	RP11-507P23.3	FAM170B	NA	chr10:50339298-50342065	inter
CUST_27128_PI429285431	0.9034228	A	0.90174973	A	1.0011603564466	0	lncRNA	28663-1_{1..526}	n324243|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326010|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326010|-1.2146500|-0.4691565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324243|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326010|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326010|-1.2146500|-0.4691565	chr7	 13107621	 13108146	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7408_PI429285431	4.4401975	P	2.4334776	A	4.01867497809151	0	lncRNA	9051-1_{1..1794}	lnc-ZNF71-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF71-1:1	chr19	 57167575	 57169368	+	lnc-ZNF71-1	lnc-ZNF71-1:1	ENSG00000250702	ENST00000512081	LOC147670	NA	chr19:57157575-57168614	inner
CUST_30882_PI429285431	0.90137804	A	0.8978745	A	1.00243141999193	0	lncRNA	32670-1_{1..347}	n336890|AY829433|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332398|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332398|-1.1753600|-0.2407229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336890|AY829433|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332398|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332398|-1.1753600|-0.2407229	chr12	 14996035	 14996381	-	NA	NA	NA	NA	ART4	NA	chr12:14986035-14996413	inner
CUST_18317_PI429285431	1.3342777	A	1.7759675	A	0.736271722982268	0	lncRNA	20044-1_{1..719}	lnc-ZSWIM2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZSWIM2-6:1	chr2	186605106	186605824	-	lnc-ZSWIM2-6	lnc-ZSWIM2-6:1	ENSG00000226747	AC007966.1	FSIP2	NA	chr2:186603355-186615206	inner
CUST_44369_PI429285431	4.251836	P	4.323031	P	0.951849244336459	0	lncRNA	48988-1_{1..1651}	"gi|223633969|ref|NR_026854.1| Homo sapiens WD repeat domain 5 pseudogene (LOC401127), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223633969|ref|NR_026854.1| Homo sapiens WD repeat domain 5 pseudogene (LOC401127), non-coding RNA"	Chr4	 39481875	 39483525	+	401127	NR_026854.1	NA	NA	NA	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10"	NA	inter
CUST_3670_PI429285431	1.5056859	A	0.8991526	A	1.52259611268649	0	lncRNA	3638-1_{1..411}	"transcript_id ""ENST00000431956.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431956.1"" | genecode_v17"	chr10	 44126330	 44126740	-	ENSG00000237389.1	ENST00000431956.1	RP11-402L1.4	RP11-402L1.4-001	NA	"hg19_refFlat_RPL21:range=chr13:27827914-278306625'pad=0,hg19_refFlat_RPL21:range=chr13:27827914-278306625'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90"	NA	inter
CUST_805_PI429285431	1.3758541	A	1.179132	A	1.1460913979195	0	lncRNA	798-1_{1..548}	"transcript_id ""ENST00000412424.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412424.1"" | genecode_v17"	chr2	 21861303	 21861850	-	ENSG00000228538.1	ENST00000412424.1	AC009411.1	AC009411.1-001	NA	NA	NA	inter
CUST_8633_PI429285431	0.9049021	A	0.90065473	A	1.00294839051901	0	lncRNA	10185-1_{1..2122}	lnc-NKX3-2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-NKX3-2-2:2	chr4	 13532772	 13534893	-	lnc-NKX3-2-2	lnc-NKX3-2-2:2	ENSG00000249512	AC006445.1	NKX3-2	NA	chr4:13542454-13543041	inter
CUST_36198_PI429285431	1.0484473	A	0.9082089	A	1.10208721665189	0	lncRNA	37457-2_{3001..5394}	n344746|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_295|NULL|-1.3309400|-0.3187599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344746|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_295|NULL|-1.3309400|-0.3187599	chr18	 46524878	 46527271	-	NA	NA	NA	NA	DYM	NA	chr18:46570172-46576620	inter
CUST_48306_PI429285431	0.9114659	A	0.9133964	A	0.998662774252143	0	lncRNA	52164-1_{1..1865}	hg19_lincRNAsTranscripts_TCONS_l2_00000134 range=chr1:16974556-16977423 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000134 range=chr1:16974556-16977423 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16974556	 16976420	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31593_PI429285431	0.89908427	A	0.8936821	A	1.00375151829907	0	lncRNA	33350-1_{1..1829}	n338101|AL049277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|489|NULL|-1.3081900|-0.4434984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338101|AL049277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|489|NULL|-1.3081900|-0.4434984	chr1	 98432560	 98434388	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014384	0.92295635	A	3.0622604	P	0.226989261084413	0	lncRNA	XR_109542	XR_109542	XR_109542	NA	NA	LOC100505701	uncharacterized LOC100505701	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505701 (LOC100505701), miscRNA [XR_109542]"	chr19:43267186-43267245	hs|19q13.2	Agilent_HUMAN_G3V2	XR_109542	XR_109542	chr19	 43267186	 43267245	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11431_PI429285431	0.90073335	A	1.4655882	A	0.676023428021539	0	lncRNA	12999-1_{1..251}	lnc-TTC14-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC14-2:5	chr3	180220694	180220944	+	lnc-TTC14-2	lnc-TTC14-2:5	XLOC_002937	linc-TTC14	NA	NA	NA	inter
CUST_40352_PI429285431	1.9155273	A	2.267898	A	0.783295893475926	0	lncRNA	41153-2_{3001..3419}	n409074|NR_033151|lncRNA|Homosapiens||RefGeneNoncode|NR_033151||12.4476000|-0.1219920	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409074|NR_033151|lncRNA|Homosapiens||RefGeneNoncode|NR_033151||12.4476000|-0.1219920	chr15	 42436331	 42436749	-	NA	NA	NA	NA	VPS39	NA	chr15:42450899-42458839	inner
CUST_7501_PI429285431	5.5287204	P	5.4930544	P	1.02502990455649	0	lncRNA	9142-1_{1..976}	lnc-LLPH-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LLPH-2:1	chr12	 66275018	 66275993	-	lnc-LLPH-2	lnc-LLPH-2:1	ENSG00000248947	ENST00000504038	HMGA2	NA	chr12:66265018-66285358	inner
CUST_50662_PI429285431	3.04429	P	3.625524	P	0.668391828134955	0	lncRNA	54338-1_{1..644}	hg19_lincRNAsTranscripts_TCONS_l2_00002999 range=chr10:42738138-42772399 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002999 range=chr10:42738138-42772399 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 42738138	 42738781	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16433_PI429285431	1.3332876	A	0.90430444	A	1.3462843545483	0	lncRNA	18133-1_{1..3000}	lnc-NDRG4-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDRG4-1:4	chr16	 58471060	 58474059	+	lnc-NDRG4-1	lnc-NDRG4-1:4	XLOC_011740	linc-NDRG4	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40"	NA	inter
CUST_27644_PI429285431	3.5457096	P	4.0590825	P	0.700582618335133	0	lncRNA	29222-1_{1..577}	n324850|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171143|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171143|-1.2022400|-0.4249839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324850|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171143|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171143|-1.2022400|-0.4249839	chr21	 25389205	 25389781	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32583_PI429285431	8.70142	P	8.843059	P	0.9064887370612	0	lncRNA	34246-1_{1..1342}	n339202|BC048130|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1634|NULL|-1.0359700|-0.2499881	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n339202|BC048130|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1634|NULL|-1.0359700|-0.2499881	chr16	 47883224	 47884565	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16993_PI429285431	3.4526644	P	3.6647177	P	0.863307663303995	0	lncRNA	18703-1_{1..586}	lnc-MKLN1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MKLN1-1:5	chr7	130612321	130612906	+	lnc-MKLN1-1	lnc-MKLN1-1:5	XLOC_006253	linc-MKLN1-1	NA	NA	NA	inter
CUST_3056_PI429285431	2.2903569	A	1.3496985	A	1.91940399356276	0	lncRNA	3035-1_{1..336}	"transcript_id ""ENST00000524022.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524022.1"" | genecode_v17"	chr8	 31133112	 31133447	+	ENSG00000253377.1	ENST00000524022.1	RP11-566H8.3	RP11-566H8.3-001	NA	NA	NA	inter
CUST_44399_PI429285431	0.905538	A	0.90458494	A	1.00066082910331	0	lncRNA	49015-1_{1..821}	"gi|355390309|ref|NR_045481.1| Homo sapiens uncharacterized LOC644248 (LOC644248), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|355390309|ref|NR_045481.1| Homo sapiens uncharacterized LOC644248 (LOC644248), non-coding RNA"	Chr4	 90757552	 90758372	+	644248	NR_045481.1	NA	NA	NA	NA	NA	inter
CUST_11337_PI429285431	0.8866517	A	0.8930189	A	0.995596318039701	0	lncRNA	12900-1_{1..626}	lnc-PFDN4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PFDN4-1:2	chr20	 52557824	 52558449	+	lnc-PFDN4-1	lnc-PFDN4-1:2	XLOC_013571	linc-PFDN4-2	BCAS1	NA	chr20:52560079-52568014	inter
CUST_44247_PI429285431	5.119694	P	5.465115	P	0.787078261839867	0	lncRNA	48893-1_{1..776}	"gi|397139044|ref|XR_158772.1| PREDICTED: Homo sapiens uncharacterized LOC100996371 (LOC100996371), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139044|ref|XR_158772.1| PREDICTED: Homo sapiens uncharacterized LOC100996371 (LOC100996371), misc_RNA"	NA	NA	NA	NA	NA	XR_158772.1	NA	NA	NA	NA	NA	Unknown
CUST_31675_PI429285431	5.332822	P	5.935718	P	0.658430923830867	0	lncRNA	33423-1_{1..2041}	n338199|BC050343|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|591|NULL|-0.3677370|-0.2369765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n338199|BC050343|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|591|NULL|-0.3677370|-0.2369765	chr22	 51174256	 51176296	-	NA	NA	NA	NA	SHANK3	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-60.60chr22:51164256-51171641"	NA	inter
CUST_6866_PI429285431	0.9225031	A	0.9241181	A	0.998881193634443	0	lncRNA	6816-1_{1..487}	"transcript_id ""ENST00000416842.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416842.1"" | genecode_v17"	chr21	 40218171	 40218657	+	ENSG00000229986.1	ENST00000416842.1	AP001042.1	AP001042.1-001	NA	NA	NA	inter
CUST_6325_PI429285431	6.3945127	P	4.935712	P	2.74879763437295	0	lncRNA	6248-1_{1..917}	"transcript_id ""ENST00000598826.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598826.1"" | genecode_v17"	chr19	  7087063	  7087979	+	ENSG00000269163.1	ENST00000598826.1	CTB-25J19.9	CTB-25J19.9-001	ZNF557	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50chr19:7077063-7087979"	NA	inner
CUST_13471_PI429285431	3.2230816	P	3.98808	P	0.588454021225415	0	lncRNA	15109-1_{1..1234}	lnc-TMEM105-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM105-2:2	chr17	 79359092	 79360325	-	lnc-TMEM105-2	lnc-TMEM105-2:2	XLOC_012586	linc-TMEM105-1	LOC100130370	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr17:79352934-79357447"	NA	inter
CUST_16659_PI429285431	1.5960995	A	1.9053937	A	0.807036483695718	0	lncRNA	18361-1_{1..1006}	lnc-CADM1-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CADM1-2:7	chr11	115630711	115631716	-	lnc-CADM1-2	lnc-CADM1-2:7	XLOC_009562	linc-CADM1-3	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.30"	NA	inter
CUST_12609_PI429285431	7.2423663	P	7.3173795	P	0.949333434943904	0	lncRNA	14222-1_{1..1452}	lnc-EGFL7-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EGFL7-1:4	chr9	139547848	139549299	+	lnc-EGFL7-1	lnc-EGFL7-1:4	XLOC_007615	linc-EGFL7-1	EGFL7	NA	chr9:139557377-139558891	inter
CUST_46119_PI429285431	6.102996	P	6.3474226	P	0.844151237875198	0	lncRNA	50379-1_{1..2356}	"gi|307548895|ref|NR_036632.1| Homo sapiens golgin A2 pseudogene 5 (GOLGA2P5), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|307548895|ref|NR_036632.1| Homo sapiens golgin A2 pseudogene 5 (GOLGA2P5), transcript variant 1, non-coding RNA"	Chr12	100550169	100552524	-	55592	NR_036632.1	NA	NA	NA	NA	NA	inter
CUST_48753_PI429285431	15.831756	P	15.759296	P	1.05150812659411	0	lncRNA	52590-1_{1..385}	hg19_lincRNAsTranscripts_TCONS_l2_00014932 range=chr2:137086872-137087505 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014932 range=chr2:137086872-137087505 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	137086872	137087256	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35181_PI429285431	0.8991096	A	0.9136737	A	0.989955719281421	0	lncRNA	36583-1_{1..1855}	n342160|AK024662|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4647|NULL|-1.0403500|-0.1993248	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342160|AK024662|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4647|NULL|-1.0403500|-0.1993248	chr6	158476758	158478612	-	NA	NA	NA	NA	SYNJ2	NA	chr6:158466758-158488597	inner
CUST_32057_PI429285431	1.4663695	A	2.2564766	A	0.578301159557762	0	lncRNA	33772-1_{1..472}	n338621|X89674|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1027|NULL|2.9556700|-0.0873858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338621|X89674|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1027|NULL|2.9556700|-0.0873858	chr1	247920862	247921333	-	NA	NA	NA	NA	OR1C1	NA	chr1:247920764-247921708	inner
CUST_13074_PI429285431	5.3190994	P	5.8319016	P	0.700859808995729	0	lncRNA	14701-1_{1..569}	lnc-C2orf76-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2orf76-1:3	chr2	120039327	120039895	-	lnc-C2orf76-1	lnc-C2orf76-1:3	XLOC_002293	linc-C1QL2	NA	NA	NA	inter
CUST_2915_PI429285431	0.9046248	A	1.0182226	A	0.924280210878221	0	lncRNA	2896-1_{1..559}	"transcript_id ""ENST00000431071.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431071.1"" | genecode_v17"	chr7	119344610	119345168	-	ENSG00000225546.1	ENST00000431071.1	RP11-328J2.1	RP11-328J2.1-002	NA	NA	NA	inter
CUST_41698_PI429285431	3.9178362	P	4.1597686	P	0.845611909074556	0	lncRNA	43185-1_{1..88}	ENST00000384882 ncrna:miRNA chromosome:GRCh37:17:29887015:29887102:1 gene:ENSG00000207614 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384882 ncrna:miRNA chromosome:GRCh37:17:29887015:29887102:1 gene:ENSG00000207614 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 29887015	 29887102	+	ENSG00000207614	ENST00000384882	NA	NA	NA	NA	NA	inter
LNCA_21_P0014755	0.9139412	A	1.9531951	A	0.48657904646336	0	lncRNA	XR_132497	XR_132497	XR_132497	NA	NA	LOC100652966	uncharacterized LOC100652966	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652966 (LOC100652966), miscRNA [XR_132497]"	chr3:186330810-186330751	hs|3q27.3	Agilent_HUMAN_G3V2	XR_132497	XR_132497	chr3	186330751	186330810	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17020_PI429285431	0.9000465	A	1.3820488	A	0.715983229151622	0	lncRNA	18731-1_{1..209}	lnc-MIPOL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MIPOL1-2:1	chr14	 38075868	 38076076	+	lnc-MIPOL1-2	lnc-MIPOL1-2:1	XLOC_010805	linc-SSTR1-4	LOC100652767	NA	chr14:38072303-38085919	inter
CUST_45663_PI429285431	2.2053275	A	1.5341637	A	1.59235697953818	0	lncRNA	50039-1_{1..946}	"gi|391353399|ref|NR_038243.2| Homo sapiens MAP/microtubule affinity-regulating kinase 2 pseudogene 9 (MARK2P9), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|391353399|ref|NR_038243.2| Homo sapiens MAP/microtubule affinity-regulating kinase 2 pseudogene 9 (MARK2P9), non-coding RNA"	Chr10	 94178418	 94179363	+	100507674	NR_038243.2	NA	NA	NA	NA	NA	inter
CUST_49449_PI429285431	7.4009366	P	7.8040314	P	0.7562343045864	0	lncRNA	53249-1_{1..1220}	hg19_lincRNAsTranscripts_TCONS_l2_00024519 range=chr6:166723265-166731401 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024519 range=chr6:166723265-166731401 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	166723265	166724484	+	NA	NA	NA	NA	SFT2D1	NA	chr6:166733516-166741401	inter
CUST_20803_PI429285431	4.588404	P	4.4726896	P	1.08351145061409	0	lncRNA	22434-1_{1..3000}	lnc-IGIP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-IGIP-2:1	chr5	139579748	139582747	+	lnc-IGIP-2	lnc-IGIP-2:1	ENSG00000250069.1	CTB-131B5.2	C5orf32	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40chr5:139569748-139592772"	NA	inner
CUST_14222_PI429285431	0.89339834	A	1.4002169	A	0.703772691805514	0	lncRNA	15879-1_{1..421}	lnc-SALL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SALL1-1:1	chr16	 51239699	 51240119	-	lnc-SALL1-1	lnc-SALL1-1:1	XLOC_011937	linc-SALL1-1	NA	NA	NA	inter
CUST_20824_PI429285431	1.3994924	A	1.2408532	A	1.11623377095667	0	lncRNA	22455-1_{1..1575}	lnc-GCNT2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-GCNT2-2:1	chr6	 10415534	 10417108	+	lnc-GCNT2-2	lnc-GCNT2-2:1	ENSG00000229950.1	RP1-290I10.6	TFAP2A	"hg19_refFlat_TFAP2A:range=chr6:10398650-104152185'pad=0,hg19_refFlat_TFAP2A:range=chr6:10398650-104152185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00chr6:10405534-10419797"	NA	inner
CUST_48541_PI429285431	1.7206539	A	1.6991866	A	1.01499125680277	0	lncRNA	52390-1_{1..2937}	hg19_lincRNAsTranscripts_TCONS_l2_00013891 range=chr2:111003114-111045267 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013891 range=chr2:111003114-111045267 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	111003114	111006050	+	NA	NA	NA	NA	LOC100287119	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00chr2:111025028-111045083"	NA	inter
CUST_34562_PI429285431	3.0505135	P	1.9145757	A	2.19761368573405	0	lncRNA	36021-1_{1..435}	n341442|BC032817|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3912|NULL|-1.0209400|-0.2281749	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341442|BC032817|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3912|NULL|-1.0209400|-0.2281749	chr13	112554849	112555283	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37139_PI429285431	0.9129256	A	0.90393376	A	1.00625213203813	0	lncRNA	38261-1_{1..3000}	n345579|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1128|NULL|-1.5442700|-0.2708368	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345579|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1128|NULL|-1.5442700|-0.2708368	chr3	 72169618	 72172617	-	NA	NA	NA	NA	RYBP	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.40chr3:72423744-72432258"	NA	inter
CUST_37685_PI429285431	2.8146622	A	3.1112032	A	0.814202186001968	0	lncRNA	38777-1_{1..677}	n346173|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1723|NULL|-1.4369900|-0.1818836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346173|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1723|NULL|-1.4369900|-0.1818836	chr1	  8137471	  8138147	+	NA	NA	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00"	NA	inter
CUST_29273_PI429285431	3.6539464	P	3.6329346	P	1.01467084567852	0	lncRNA	31024-1_{1..543}	n332382|AM998489|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500270|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500270|1.0945100|-0.1971778	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332382|AM998489|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500270|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500270|1.0945100|-0.1971778	chr18	 45567279	 45567821	-	NA	NA	NA	NA	ZBTB7C	NA	chr18:45557279-45663680	inner
LNCA_21_P0002747	0.928184	A	0.91599494	A	1.00848460451842	0	lncRNA	ENST00000498247	NA	AK056287	NA	Hs.476675	XLOC_002691	NA	ENST00000498247	THC2629664	NA	"BROAD Institute lincRNA (XLOC_002691), lincRNA [TCONS_00005536]"	chr3:67355270-67355329	hs|3p14.1	Agilent_HUMAN_G3V2	ENST00000498247	ENST00000498247	chr3	 67355270	 67355329	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3669_PI429285431	0.9211314	A	0.92087257	A	1.00017942337919	0	lncRNA	3637-1_{1..391}	"transcript_id ""ENST00000451438.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451438.1"" | genecode_v17"	chr10	 43819113	 43819503	+	ENSG00000224265.1	ENST00000451438.1	RP11-168L22.2	RP11-168L22.2-001	NA	NA	NA	inter
CUST_31880_PI429285431	0.9090123	A	1.0230895	A	0.923973128432659	0	lncRNA	33612-2_{3001..4743}	n338435|AL832767|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|832|NULL|-0.0822992|-0.3332305	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338435|AL832767|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|832|NULL|-0.0822992|-0.3332305	chr14	 88644818	 88646560	+	NA	NA	NA	NA	KCNK10	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70chr14:88646452-88656542"	NA	inner
CUST_37210_PI429285431	1.3159271	A	1.3663741	A	0.96563709267322	0	lncRNA	38323-1_{1..584}	n345646|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1195|NULL|-1.3033500|-0.2672994	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345646|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1195|NULL|-1.3033500|-0.2672994	chr4	103339758	103340341	+	NA	NA	NA	NA	NA	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70"	NA	inter
CUST_18849_PI429285431	0.9292115	A	0.9132671	A	1.01111311282911	0	lncRNA	20543-1_{1..561}	lnc-CETN3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CETN3-3:1	chr5	 89585713	 89586273	-	lnc-CETN3-3	lnc-CETN3-3:1	ENSG00000248555	RP11-61G23.1	NA	NA	NA	inter
CUST_10479_PI429285431	4.4374285	P	4.6963315	P	0.835723147109803	0	lncRNA	12006-1_{1..281}	lnc-MPV17L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MPV17L2-1:1	chr19	 18316266	 18316546	+	lnc-MPV17L2-1	lnc-MPV17L2-1:1	XLOC_012991	linc-PGPEP1	PDE4C	NA	chr19:18318771-18326371	inter
CUST_30493_PI429285431	4.2898417	P	3.106848	A	2.27047428950151	0	lncRNA	32273-1_{1..877}	n335647|CR608861|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000288056|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000288056|-1.3243700|-0.3874961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335647|CR608861|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000288056|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000288056|-1.3243700|-0.3874961	chr22	 30425439	 30426315	+	NA	NA	NA	NA	MTMR3	NA	chr22:30415439-30426857	inner
CUST_46150_PI429285431	8.757458	P	8.802331	P	0.969375146974775	0	lncRNA	50399-1_{1..963}	"gi|397139471|ref|XR_109143.2| PREDICTED: Homo sapiens uncharacterized LOC100506691, transcript variant 1 (LOC100506691), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139471|ref|XR_109143.2| PREDICTED: Homo sapiens uncharacterized LOC100506691, transcript variant 1 (LOC100506691), misc_RNA"	Chr12	122502321	122503283	+	100506691	XR_109143.3	NA	NA	NA	NA	NA	inter
LNCA_21_P0005849	1.1973885	A	1.0112193	A	1.13773865460981	0	lncRNA	TCONS_00015028	NA	NA	NA	NA	XLOC_007107	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007107), lincRNA [TCONS_00015028]"	chr8:66925523-66925464	hs|8q13.1	Agilent_HUMAN_G3V2	TCONS_00015028	TCONS_00015028	chr8	 66925464	 66925523	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4239_PI429285431	7.880472	P	8.033468	P	0.899380805757375	0	lncRNA	4197-1_{1..540}	"transcript_id ""ENST00000550019.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550019.1"" | genecode_v17"	chr12	 47747537	 47748076	+	ENSG00000257924.1	ENST00000550019.1	RP11-493L12.5	RP11-493L12.5-001	NA	NA	NA	inter
LNCA_21_P0008771	0.95916027	A	0.9208814	A	1.02688802189073	0	lncRNA	TCONS_00023768	NA	NA	NA	NA	XLOC_011565	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011565), lincRNA [TCONS_00023768]"	chr15:86629108-86629049	hs|15q25.3	Agilent_HUMAN_G3V2	TCONS_00023768	TCONS_00023768	chr15	 86629049	 86629108	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32906_PI429285431	1.4835421	A	1.0716939	A	1.33038905052326	0	lncRNA	34531-1_{1..1930}	n339575|AK097836|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2019|NULL|-0.8793760|-0.3156031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339575|AK097836|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2019|NULL|-0.8793760|-0.3156031	chr20	  8000548	  8002477	+	NA	NA	NA	NA	TMX4	NA	chr20:7990548-8000393	inter
CUST_5001_PI429285431	8.417085	P	8.671247	P	0.838474027037505	0	lncRNA	4944-1_{1..499}	"transcript_id ""ENST00000455286.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455286.1"" | genecode_v17"	chr14	101293748	101294246	+	ENSG00000214548.9	ENST00000455286.1	MEG3	MEG3-004	NA	NA	NA	inter
CUST_22454_PI429285431	0.905808	A	0.897275	A	1.00593215082159	0	lncRNA	24041-1_{1..500}	lnc-KALRN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KALRN-2:1	chr3	123411086	123411585	+	lnc-KALRN-2	lnc-KALRN-2:1	ENSG00000250174.1	MYLK-AS2	MYLK	NA	chr3:123401086-123421254	inner
LNCA_21_P0013311	2.1145225	A	2.094034	A	1.01430286703365	0	lncRNA	TCONS_l2_00026601	NA	NA	NA	NA	XLOC_l2_013852	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013852), lincRNA [TCONS_l2_00026601]"	chr7:57688107-57688048	hs|7p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00026601	TCONS_l2_00026601	chr7	 57688048	 57688107	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13997_PI429285431	2.8626745	P	3.2408307	P	0.769420300750384	0	lncRNA	15643-1_{1..401}	lnc-LDOC1L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LDOC1L-2:1	chr22	 45063464	 45063864	-	lnc-LDOC1L-2	lnc-LDOC1L-2:1	XLOC_014393	linc-LDOC1L-1	PRR5	NA	chr22:45064427-45073704	inter
CUST_52136_PI429285431	5.4053383	P	5.337653	P	1.04803383937797	0	lncRNA	55660-1_{1..462}	hg19_lincRNAsTranscripts_TCONS_l2_00017895 range=chr22:20390564-20397330 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017895 range=chr22:20390564-20397330 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 20390564	 20391025	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35276_PI429285431	6.9638624	P	6.8513346	P	1.08112085028271	0	lncRNA	36676-1_{1..1186}	n342285|AL109699|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4777|NULL|-0.9213400|-0.1891020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342285|AL109699|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4777|NULL|-0.9213400|-0.1891020	chr15	 90617746	 90618931	-	NA	NA	NA	NA	ZNF710	NA	chr15:90610342-90625432	inner
CUST_36045_PI429285431	0.8941312	A	0.9946113	A	0.932722548511385	0	lncRNA	37363-1_{1..3000}	n344644|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_192|NULL|-1.3349100|-0.2234839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344644|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_192|NULL|-1.3349100|-0.2234839	chr5	173084842	173087841	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11689_PI429285431	2.243924	A	2.234235	A	1.00673850527905	0	lncRNA	13267-1_{1..273}	lnc-CCDC59-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC59-4:1	chr12	 82954894	 82955166	-	lnc-CCDC59-4	lnc-CCDC59-4:1	XLOC_010141	linc-CCDC59-2	NA	NA	NA	inter
CUST_17085_PI429285431	5.4743047	P	5.7758822	P	0.811364732749796	0	lncRNA	18793-1_{1..1570}	lnc-BRD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BRD3-1:1	chr9	137000308	137001877	-	lnc-BRD3-1	lnc-BRD3-1:1	XLOC_007882	linc-BRD3-6	WDR5	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.44;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30chr9:137001210-137011037"	NA	inter
CUST_40795_PI429285431	2.268933	A	1.9254491	A	1.26881690681464	0	lncRNA	41503-3_{6001..6773}	n410553|NR_037771|lncRNA|Homosapiens||RefGeneNoncode|NR_037771||11.3096000|-0.3242510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410553|NR_037771|lncRNA|Homosapiens||RefGeneNoncode|NR_037771||11.3096000|-0.3242510	chr10	121658084	121658856	+	NA	NA	NA	NA	SEC23IP	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80chr10:121652085-121704170"	NA	inter
CUST_15574_PI429285431	1.2123284	A	0.9261447	A	1.21941035309825	0	lncRNA	17258-1_{1..390}	lnc-IRX1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRX1-3:1	chr5	  3346370	  3346759	+	lnc-IRX1-3	lnc-IRX1-3:1	XLOC_004261	linc-IRX1-3	NA	NA	NA	inter
CUST_37744_PI429285431	0.91000634	A	1.1255157	A	0.861242034668019	0	lncRNA	38838-1_{1..3000}	n346247|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1797|NULL|-1.2351000|-0.2173654	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n346247|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1797|NULL|-1.2351000|-0.2173654	chr15	102142835	102145834	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51876_PI429285431	2.5064673	A	1.1859758	A	2.49751180980083	0	lncRNA	55426-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00013205 range=chr19:53407534-53418575 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013205 range=chr19:53407534-53418575 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 53407534	 53410533	-	NA	NA	NA	NA	ZNF888	NA	chr19:53408210-53421126	inter
LNCA_21_P0010047	4.7397375	P	4.6485853	P	1.06522057504182	0	lncRNA	TCONS_00028421	NA	NA	NA	NA	XLOC_013772	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013772), lincRNA [TCONS_00028421]"	chr20:46608759-46608700	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028421	TCONS_00028421	chr20	 46608700	 46608759	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51092_PI429285431	0.8981265	A	1.1943923	A	0.814357513224689	0	lncRNA	54730-1_{1..1898}	hg19_lincRNAsTranscripts_TCONS_l2_00006888 range=chr13:64312310-64325174 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006888 range=chr13:64312310-64325174 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 64312310	 64314207	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47236_PI429285431	0.8942544	A	0.8988083	A	0.996848453635393	0	lncRNA	51311-1_{1..772}	"gi|310124501|ref|XR_109652.1| PREDICTED: Homo sapiens uncharacterized LOC100505651 (LOC100505651), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124501|ref|XR_109652.1| PREDICTED: Homo sapiens uncharacterized LOC100505651 (LOC100505651), misc_RNA"	Chr20	 22197692	 22198463	+	100505651	XR_109652.1	NA	NA	NA	NA	NA	inter
CUST_1842_PI429285431	0.9096274	A	0.91266286	A	0.997898191358949	0	lncRNA	1832-1_{1..556}	"transcript_id ""ENST00000512794.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512794.1"" | genecode_v17"	chr4	111715559	111716114	+	ENSG00000249519.1	ENST00000512794.1	RP11-777N19.1	RP11-777N19.1-001	NA	NA	NA	inter
CUST_34679_PI429285431	0.9031818	A	0.89869833	A	1.0031125385097	0	lncRNA	36132-1_{1..3000}	n341585|AK093952|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4056|NULL|-1.0897600|-0.2628309	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341585|AK093952|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4056|NULL|-1.0897600|-0.2628309	chr8	110656343	110659342	+	NA	NA	NA	NA	SYBU	NA	chr8:110646343-110670313	inner
CUST_7081_PI429285431	0.91140175	A	0.9189713	A	0.994766928236998	0	lncRNA	7017-12_{33001..36000}	"transcript_id ""ENST00000604411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000604411.1"" | genecode_v17"	chrX	 73045040	 73048039	+	ENSG00000270641.1	ENST00000604411.1	TSIX	TSIX-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_26329_PI429285431	2.5877528	A	1.8108771	A	1.71341627832437	0	lncRNA	27836-1_{1..2241}	lnc-PABPC4-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PABPC4-2:6	chr1	 39989479	 39991719	-	lnc-PABPC4-2	lnc-PABPC4-2:6	ENSG00000182109.3	RP11-69E11.4	BMP8A	"hg19_refFlat_BMP8B:range=chr1:40226091-402541575'pad=0,hg19_refFlat_BMP8B:range=chr1:40226091-402541575'pad=0 3'pad=0 strand=- repeatMasking=none,-100.30;hg19_refFlat_BMP8A:range=chr1:39957664-399914705'pad=0,hg19_refFlat_BMP8A:range=chr1:39957664-399914705'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70chr1:39979479-39995541"	NA	inner
CUST_24775_PI429285431	0.9091872	A	0.90453553	A	1.00322949556583	0	lncRNA	26318-1_{1..488}	lnc-C8orf48-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C8orf48-3:1	chr8	 14022522	 14023009	+	lnc-C8orf48-3	lnc-C8orf48-3:1	ENSG00000254575.1	RP11-3G21.1	SGCZ	NA	chr8:14012522-14032868	inner
CUST_2765_PI429285431	0.9050294	A	0.9535719	A	0.966912670805028	0	lncRNA	2748-1_{1..526}	"transcript_id ""ENST00000411542.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411542.1"" | genecode_v17"	chr7	 13141097	 13141622	+	ENSG00000229618.1	ENST00000411542.1	AC011288.2	AC011288.2-001	NA	NA	NA	inter
CUST_27454_PI429285431	2.8064876	A	3.4021506	P	0.661740278210211	0	lncRNA	29024-1_{1..652}	n324630|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280615|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280615|-1.1527200|-0.4001053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324630|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280615|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280615|-1.1527200|-0.4001053	chr5	 70707368	 70708019	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005139	0.9268382	A	0.92381483	A	1.00209783778033	0	lncRNA	TCONS_00012614	NA	NA	NA	NA	XLOC_005492	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005492), lincRNA [TCONS_00012614]"	chr6:144609247-144609306	hs|6q24.2	Agilent_HUMAN_G3V2	TCONS_00012614	TCONS_00012614	chr6	144609247	144609306	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27104_PI429285431	7.4742017	P	7.5684357	P	0.936769493872399	0	lncRNA	28636-1_{1..576}	n324215|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328279|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328279|-1.2221100|-0.3293623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324215|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328279|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328279|-1.2221100|-0.3293623	chr7	 26557982	 26558557	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80"	NA	inter
CUST_34404_PI429285431	0.918908	A	0.920918	A	0.998607744255615	0	lncRNA	35886-1_{1..2140}	n341274|AK096978|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3743|NULL|-1.0860900|-0.3044532	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341274|AK096978|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3743|NULL|-1.0860900|-0.3044532	chr7	 93583355	 93585494	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16743_PI429285431	5.8230157	P	6.0862637	P	0.833209965637579	0	lncRNA	18450-1_{1..242}	lnc-DPYS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DPYS-2:1	chr8	105331031	105331272	-	lnc-DPYS-2	lnc-DPYS-2:1	XLOC_007178	linc-SLC25A32-3	NA	NA	NA	inter
CUST_19833_PI429285431	1.0776134	A	2.426123	A	0.392697522149418	0	lncRNA	21490-1_{1..669}	lnc-MTNR1A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MTNR1A-1:3	chr4	187421999	187422667	-	lnc-MTNR1A-1	lnc-MTNR1A-1:3	ENSG00000251165.1	RP11-215A19.1	NA	NA	NA	inter
LNCA_21_P0002117	9.336419	P	9.089754	P	1.1864612642539	0	lncRNA	ENST00000413043	NA	NA	NA	NA	XLOC_002358	NA	ENST00000413043	NA	NA	"BROAD Institute lincRNA (XLOC_002358), lincRNA [TCONS_00003422]"	chr2:154028601-154028542	hs|2q23.3	Agilent_HUMAN_G3V2	ENST00000413043	ENST00000413043	chr2	154028542	154028601	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45916_PI429285431	4.226918	P	6.181056	P	0.25807494670892	0	lncRNA	50226-1_{1..1094}	"gi|310120796|ref|XR_110532.1| PREDICTED: Homo sapiens uncharacterized LOC100128242 (LOC100128242), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120796|ref|XR_110532.1| PREDICTED: Homo sapiens uncharacterized LOC100128242 (LOC100128242), misc_RNA"	Chr11	123301014	123302107	+	100128242	XR_110532.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0013089	8.384772	P	8.448663	P	0.956680435479226	0	lncRNA	TCONS_l2_00024837	NA	NA	NA	NA	XLOC_l2_013056	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013056), lincRNA [TCONS_l2_00024837]"	chr6:86368810-86368751	hs|6q14.3	Agilent_HUMAN_G3V2	TCONS_l2_00024837	TCONS_l2_00024837	chr6	 86368751	 86368810	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006347	8.047824	P	7.864665	P	1.13536722452895	0	lncRNA	THC2505770	NA	NA	NA	NA	XLOC_007348	NA	NA	THC2505770	NA	"BROAD Institute lincRNA (XLOC_007348), lincRNA [TCONS_00016575]"	chr9:037905553-037905612	hs|9p13.2	Agilent_HUMAN_G3V2	THC2505770	THC2505770	chr9	 37905553	 37905612	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6314_PI429285431	1.5529943	A	1.5346761	A	1.01277816049495	0	lncRNA	6238-1_{1..529}	"transcript_id ""ENST00000589368.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589368.1"" | genecode_v17"	chr19	  4770385	  4770913	+	ENSG00000176840.7	ENST00000589368.1	MIR7-3HG	MIR7-3HG-006	NA	NA	NA	inter
CUST_27092_PI429285431	0.93073416	A	0.93943155	A	0.993989564017804	0	lncRNA	28625-1_{1..510}	n324203|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328965|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328965|-1.1360400|-0.3560656	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324203|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328965|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328965|-1.1360400|-0.3560656	chr7	 34215662	 34216171	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27825_PI429285431	3.6914322	P	3.5058112	P	1.13730641506617	0	lncRNA	29411-1_{1..1713}	n325053|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078198|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078198|-1.1562100|-0.3098426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325053|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078198|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078198|-1.1562100|-0.3098426	chr20	 18716294	 18718006	-	NA	NA	NA	NA	DTD1	"hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30chr20:18706294-18732637"	NA	inner
CUST_32628_PI429285431	2.6049037	A	2.1723528	A	1.34961779396445	0	lncRNA	34287-1_{1..915}	n339252|BC038776|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1684|NULL|3.0718300|-0.1412273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339252|BC038776|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1684|NULL|3.0718300|-0.1412273	chr16	 67595313	 67596227	-	NA	NA	NA	NA	CTCF	NA	chr16:67596310-67606212	inter
CUST_39441_PI429285431	0.90667063	A	0.9004724	A	1.00430552791522	0	lncRNA	40388-2_{3001..6000}	n386770|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tzj.1||8.7166400|-0.3646514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386770|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tzj.1||8.7166400|-0.3646514	chr15	 21935513	 21938512	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10"	NA	inter
CUST_10579_PI429285431	2.5050137	A	2.243924	A	1.19838352888107	0	lncRNA	12109-3_{6001..6901}	lnc-GPCPD1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-GPCPD1-1:2	chr20	  5496522	  5497422	-	lnc-GPCPD1-1	lnc-GPCPD1-1:2	XLOC_013643	linc-PROKR2-4	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00"	NA	inter
CUST_12059_PI429285431	1.2908739	A	1.3614235	A	0.952275156200291	0	lncRNA	13644-1_{1..421}	lnc-SGCG-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SGCG-3:5	chr13	 23692055	 23692475	+	lnc-SGCG-3	lnc-SGCG-3:5	XLOC_010306	linc-SGCG-3	NA	NA	NA	inter
LNCA_21_P0008264	0.9243201	A	0.91525865	A	1.00630068484991	0	lncRNA	TCONS_00022310	NA	NA	NA	NA	XLOC_010719	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010719), lincRNA [TCONS_00022310]"	chr13:110688431-110688372	hs|13q34	Agilent_HUMAN_G3V2	TCONS_00022310	TCONS_00022310	chr13	110688372	110688431	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30916_PI429285431	8.148747	P	7.2194796	P	1.90430874325863	0	lncRNA	32704-1_{1..348}	n336966|BC104671|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000337821|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000337821|1.5335400|-0.4036557	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336966|BC104671|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000337821|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000337821|1.5335400|-0.4036557	chr10	 70715880	 70716227	+	NA	NA	NA	NA	DDX21	NA	chr10:70715892-70729722	inner
CUST_9461_PI429285431	3.334773	P	3.4696164	P	0.910768689297557	0	lncRNA	10967-1_{1..511}	lnc-INPP4B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INPP4B-1:1	chr4	143839745	143840255	-	lnc-INPP4B-1	lnc-INPP4B-1:1	XLOC_004105	linc-INPP4B-2	NA	NA	NA	inter
CUST_40355_PI429285431	0.91234815	A	0.9132813	A	0.999353398845144	0	lncRNA	41156-1_{1..2577}	n409084|NR_033186|lncRNA|Homosapiens||RefGeneNoncode|NR_033186||1.5384600|-0.1969736	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409084|NR_033186|lncRNA|Homosapiens||RefGeneNoncode|NR_033186||1.5384600|-0.1969736	chr1	178511930	178514506	+	NA	NA	NA	NA	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60"	NA	inter
LNCA_21_P0014399	2.4287858	A	1.2424626	A	2.27572021724889	0	lncRNA	ENST00000454626	XR_109602	XR_109602	NA	Hs.672351	LOC100505725	NA	ENST00000454626	THC2632469	NA	"PREDICTED: Homo sapiens hypothetical LOC100505725 (LOC100505725), miscRNA [XR_109602]"	chr20:39727055-39726996	hs|20q12	Agilent_HUMAN_G3V2	ENST00000454626	ENST00000454626	chr20	 39726996	 39727055	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3253634	9.199537	P	9.245038	P	0.968953273261278	0	lncRNA	XR_109177	XR_109177	XR_109177	   390660	Hs.640255	LOC390660	FLJ00317 protein	NA	THC2695667	NA	"PREDICTED: Homo sapiens FLJ00317 protein (LOC390660), miscRNA [XR_109177]"	chr15:82597136-82597195	hs|15q25.2	Agilent_HUMAN_G3V2	XR_109177	XR_109177	chr15	 82597136	 82597195	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34273_PI429285431	8.128721	P	7.8402104	P	1.2213787076962	0	lncRNA	35773-2_{3001..6000}	n341130|BX537510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3596|NULL|-0.7089240|-0.2577063	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341130|BX537510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3596|NULL|-0.7089240|-0.2577063	chr11	115512280	115515279	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23088_PI429285431	2.323288	A	2.899377	A	0.670779730696681	0	lncRNA	24660-1_{1..573}	lnc-RARS-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RARS-4:3	chr5	168463136	168463708	+	lnc-RARS-4	lnc-RARS-4:3	ENSG00000248222.1	CTB-174D11.1	SLIT3	NA	chr5:168453136-168473475	inner
CUST_51436_PI429285431	0.9086432	A	0.91092575	A	0.998419107831599	0	lncRNA	55013-1_{1..774}	hg19_lincRNAsTranscripts_TCONS_l2_00010043 range=chr16:21600914-21610681 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010043 range=chr16:21600914-21610681 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 21600914	 21601687	-	NA	NA	NA	NA	METTL9	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10chr16:21610856-21620681"	NA	inter
CUST_8602_PI429285431	0.90333366	A	0.8931257	A	1.00710071002721	0	lncRNA	10157-1_{1..1756}	lnc-RP1-241P17.4.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP1-241P17.4.1-4:1	chrX	114796953	114798708	-	lnc-RP1-241P17.4.1-4	lnc-RP1-241P17.4.1-4:1	ENSG00000256559	AC003983.1	PLS3	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50chrX:114795177-114807058"	NA	inner
CUST_9062_PI429285431	4.8531713	P	5.190029	P	0.791763957534202	0	lncRNA	10586-1_{1..3000}	lnc-ANKS1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKS1A-1:1	chr6	 35127447	 35130446	+	lnc-ANKS1A-1	lnc-ANKS1A-1:1	ENSG00000244904	XLOC_005269	NA	NA	NA	inter
CUST_19614_PI429285431	4.541676	P	4.8414907	P	0.812356728894285	0	lncRNA	21270-1_{1..795}	lnc-CDY1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CDY1B-1:1	chrY	 26332656	 26333450	-	lnc-CDY1B-1	lnc-CDY1B-1:1	ENSG00000244231.1	CSPG4P2Y	NA	NA	NA	inter
CUST_46502_PI429285431	2.7698202	A	1.2762742	A	2.81580221291076	0	lncRNA	50696-1_{1..2379}	"gi|338827655|ref|NR_040067.1| Homo sapiens LOXL1 antisense RNA 1 (LOXL1-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338827655|ref|NR_040067.1| Homo sapiens LOXL1 antisense RNA 1 (LOXL1-AS1), transcript variant 2, non-coding RNA"	Chr15	 74209809	 74212187	-	100287616	NR_040067.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOXL1:range=chr15:74219125-742441785'pad=0,hg19_refFlat_LOXL1:range=chr15:74219125-742441785'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70"	NA	inter
CUST_11929_PI429285431	1.3416028	A	1.3087063	A	1.02306407173505	0	lncRNA	13509-2_{3001..4042}	lnc-ADCY9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ADCY9-1:1	chr16	  4005140	  4006181	-	lnc-ADCY9-1	lnc-ADCY9-1:1	XLOC_011865	linc-CREBBP	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80"	NA	inter
CUST_44768_PI429285431	0.89715403	A	0.8927992	A	1.00302309850996	0	lncRNA	49310-1_{1..702}	"gi|310119782|ref|XR_108661.1| PREDICTED: Homo sapiens uncharacterized LOC100505985 (LOC100505985), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310119782|ref|XR_108661.1| PREDICTED: Homo sapiens uncharacterized LOC100505985 (LOC100505985), misc_RNA"	Chr6	 50061310	 50062011	+	100505985	XR_108661.2	NA	NA	NA	NA	NA	inter
CUST_2580_PI429285431	0.8941885	A	0.89076227	A	1.00237770392965	0	lncRNA	2568-1_{1..739}	"transcript_id ""ENST00000452624.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452624.1"" | genecode_v17"	chr6	 93780105	 93780843	+	ENSG00000235099.1	ENST00000452624.1	RP1-23E21.2	RP1-23E21.2-001	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-25.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00"	NA	inter
CUST_19315_PI429285431	1.313807	A	0.8879035	A	1.34341356352519	0	lncRNA	20981-1_{1..404}	lnc-MFSD6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MFSD6-1:1	chr2	191432799	191433202	+	lnc-MFSD6-1	lnc-MFSD6-1:1	ENSG00000233654.1	AC093388.3	NA	NA	NA	inter
LNCA_21_P0006297	1.2669724	A	1.4110748	A	0.904942229368283	0	lncRNA	ENST00000474602	NA	AF064105	NA	NA	CDC14B	CDC14 cell division cycle 14 homolog B (S. cerevisiae)	ENST00000474602	NA	GO:0051488|GO:0006470|GO:0006281|GO:0016787|GO:0031572|GO:0005730|GO:0005654|GO:0005634|GO:0008138|GO:0004722|GO:0035335|GO:0004725	"BROAD Institute lincRNA (XLOC_007789), lincRNA [TCONS_00016423]"	chr9:99254198-99254139	hs|9q22.32	Agilent_HUMAN_G3V2	ENST00000474602	ENST00000474602	chr9	 99254139	 99254198	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48398_PI429285431	3.4765315	P	3.885418	P	0.75320448724388	0	lncRNA	52251-1_{1..1134}	hg19_lincRNAsTranscripts_TCONS_l2_00001476 range=chr1:120111648-120150111 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001476 range=chr1:120111648-120150111 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	120111648	120112781	-	NA	NA	NA	NA	ZNF697	NA	chr1:120143876-120160111	inter
CUST_38090_PI429285431	1.6294365	A	1.4131674	A	1.16172540360142	0	lncRNA	39166-1_{1..1077}	n381086|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001blq.2||-0.1944830|-0.2238156	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381086|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001blq.2||-0.1944830|-0.2238156	chr1	 26551810	 26552886	+	NA	NA	NA	NA	CEP85	"hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0,hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00chr1:26545577-26566330"	NA	inter
CUST_51964_PI429285431	4.08539	P	3.6003792	P	1.39959634291958	0	lncRNA	55506-2_{3001..4336}	hg19_lincRNAsTranscripts_TCONS_l2_00016247 range=chr20:37230531-37279254 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016247 range=chr20:37230531-37279254 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 37233531	 37234866	+	NA	NA	NA	NA	ARHGAP40	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00chr20:37230577-37279295"	NA	inner
CUST_41958_PI429285431	3.7917757	P	4.0519166	P	0.835006365018802	0	lncRNA	43736-1_{1..69}	ENST00000362273 ncrna:miRNA chromosome:GRCh37:19:54291959:54292027:1 gene:ENSG00000199143 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362273 ncrna:miRNA chromosome:GRCh37:19:54291959:54292027:1 gene:ENSG00000199143 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54291959	 54292027	+	ENSG00000199143	ENST00000362273	NA	NA	NLRP12	NA	chr19:54296838-54302027	inter
CUST_849_PI429285431	2.051652	A	1.76763	A	1.21758458575852	0	lncRNA	843-1_{1..1156}	"transcript_id ""ENST00000417039.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417039.1"" | genecode_v17"	chr2	 38633870	 38635025	-	ENSG00000231367.1	ENST00000417039.1	AC016995.3	AC016995.3-001	NA	"hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50"	NA	inter
CUST_13778_PI429285431	1.9460405	A	2.7100394	A	0.588861843782039	0	lncRNA	15421-1_{1..452}	lnc-TMEM70-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM70-1:5	chr8	 74794686	 74795137	+	lnc-TMEM70-1	lnc-TMEM70-1:5	XLOC_006844	linc-TMEM70-2	UBE2W	NA	chr8:74784686-74791110	inter
CUST_25238_PI429285431	6.129646	P	6.762562	P	0.644871671477278	0	lncRNA	26769-1_{1..3000}	lnc-OGFOD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OGFOD2-1:1	chr12	123467016	123470015	+	lnc-OGFOD2-1	lnc-OGFOD2-1:1	ENSG00000256028.2	RP11-197N18.2	PITPNM2	NA	chr12:123468027-123477454	inner
CUST_12790_PI429285431	0.90854007	A	1.2892288	A	0.768070832806628	0	lncRNA	14417-1_{1..683}	lnc-KIDINS220-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIDINS220-9:1	chr2	  8009242	  8009924	-	lnc-KIDINS220-9	lnc-KIDINS220-9:1	XLOC_001971	linc-CMPK2-5	NA	NA	NA	inter
CUST_46243_PI429285431	0.90923	A	0.90443665	A	1.00332802264913	0	lncRNA	50482-1_{1..623}	"gi|389616142|ref|NR_047028.1| Homo sapiens long intergenic non-protein coding RNA 446 (LINC00446), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|389616142|ref|NR_047028.1| Homo sapiens long intergenic non-protein coding RNA 446 (LINC00446), non-coding RNA"	Chr13	 78587018	 78587640	+	100874175	NR_047028.1	NA	NA	NA	NA	NA	inter
CUST_1406_PI429285431	0.9085363	A	0.8978535	A	1.00743223567476	0	lncRNA	1395-1_{1..2051}	"transcript_id ""ENST00000465215.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000465215.1"" | genecode_v17"	chr3	101659703	101661753	+	ENSG00000214407.3	ENST00000465215.1	RP11-221J22.1	RP11-221J22.1-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00"	NA	inter
CUST_6576_PI429285431	5.297961	P	5.6436543	P	0.786929719576977	0	lncRNA	6524-1_{1..507}	"transcript_id ""ENST00000599803.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599803.1"" | genecode_v17"	chr19	 53771123	 53771629	-	ENSG00000269758.1	ENST00000599803.1	CTD-2245F17.9	CTD-2245F17.9-001	VN1R2	NA	chr19:53761545-53762855	inter
CUST_4721_PI429285431	0.88971686	A	0.8901926	A	0.999670296524461	0	lncRNA	4667-1_{1..2712}	"transcript_id ""ENST00000551932.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551932.1"" | genecode_v17"	chr14	 19740033	 19742744	-	ENSG00000257310.1	ENST00000551932.1	RP11-496I2.2	RP11-496I2.2-001	NA	"hg19_refFlat_NBEA:range=chr13:35516958-362451285'pad=0,hg19_refFlat_NBEA:range=chr13:35516958-362451285'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
CUST_9620_PI429285431	0.91259944	A	0.9025948	A	1.00695878863531	0	lncRNA	11136-1_{1..243}	lnc-OLFM4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OLFM4-2:1	chr13	 54348953	 54349195	+	lnc-OLFM4-2	lnc-OLFM4-2:1	XLOC_010398	linc-PRR20A-4	NA	NA	NA	inter
CUST_7611_PI429285431	4.65191	P	4.8181305	P	0.891174279343564	0	lncRNA	9246-1_{1..1793}	lnc-SLC15A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC15A1-1:1	chr13	 99157357	 99159149	-	lnc-SLC15A1-1	lnc-SLC15A1-1:1	ENSG00000250780	AL356423.1	STK24	NA	chr13:99147357-99168256	inner
CUST_46786_PI429285431	5.6734242	P	5.1562037	P	1.43119524569092	0	lncRNA	50932-2_{3001..3083}	"gi|299829221|ref|NR_033892.1| Homo sapiens TBC1 domain family, member 3 pseudogene 5 (TBC1D3P5), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299829221|ref|NR_033892.1| Homo sapiens TBC1 domain family, member 3 pseudogene 5 (TBC1D3P5), non-coding RNA"	Chr17	 25748031	 25748113	+	440419	NR_033892.1	NA	NA	NA	NA	NA	inter
CUST_10139_PI429285431	1.1959443	A	1.2903154	A	0.936680476448946	0	lncRNA	11661-1_{1..370}	lnc-NBAS-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NBAS-4:6	chr2	 16062143	 16062512	-	lnc-NBAS-4	lnc-NBAS-4:6	XLOC_001996	linc-NBAS-4	NA	NA	NA	inter
CUST_36438_PI429285431	1.068902	A	1.8481294	A	0.582678749031861	0	lncRNA	37652-1_{1..2134}	n344952|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_501|NULL|-1.3362000|-0.2691840	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344952|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_501|NULL|-1.3362000|-0.2691840	chr7	 34255225	 34257358	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6577_PI429285431	1.2713891	A	1.1651754	A	1.07639955525446	0	lncRNA	6525-1_{1..2239}	"transcript_id ""ENST00000597619.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597619.1"" | genecode_v17"	chr19	 54265215	 54267453	+	ENSG00000269842.1	ENST00000597619.1	hsa-mir-519a-2	hsa-mir-519a-2.1-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10"	NA	inter
CUST_38981_PI429285431	5.6891894	P	6.2079086	P	0.697991222870929	0	lncRNA	39965-1_{1..3000}	n385218|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ubq.3||0.8684730|-0.1720164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385218|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ubq.3||0.8684730|-0.1720164	chr7	 74440800	 74443799	+	NA	NA	NA	NA	GATSL1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-62.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90chr7:74430800-74438803"	NA	inter
CUST_21292_PI429285431	5.749546	P	5.8196826	P	0.952547802828445	0	lncRNA	22917-1_{1..536}	lnc-C12orf43-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C12orf43-1:1	chr12	121418447	121418982	-	lnc-C12orf43-1	lnc-C12orf43-1:1	ENSG00000241388.2	HNF1A-AS1	HNF1A	NA	chr12:121416549-121428768	inner
CUST_40910_PI429285431	1.0795493	A	1.3850073	A	0.809185290665269	0	lncRNA	41596-1_{1..219}	n410753|NR_038205|lncRNA|Homosapiens||RefGeneNoncode|NR_038205||-1.0636500|-0.1416917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410753|NR_038205|lncRNA|Homosapiens||RefGeneNoncode|NR_038205||-1.0636500|-0.1416917	chr8	 96281063	 96281281	+	NA	NA	NA	NA	C8orf37	NA	chr8:96271063-96281462	inter
LNCA_21_P0001962	0.92198366	A	0.9098665	A	1.0084343456389	0	lncRNA	ENST00000448086	NA	NA	NA	NA	XLOC_001839	NA	ENST00000448086	NA	NA	"BROAD Institute lincRNA (XLOC_001839), lincRNA [TCONS_00003097]"	chr2:216139802-216139861	hs|2q35	Agilent_HUMAN_G3V2	ENST00000448086	ENST00000448086	chr2	216139802	216139861	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7246_PI429285431	0.9052964	A	1.252079	A	0.786335776305988	0	lncRNA	7932-1_{1..304}	"transcript_id ""ENST00000364196.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000364196.1"" | genecode_v17"	chr7	154973591	154973894	+	ENSG00000201066.1	ENST00000364196.1	RN7SKP280	RN7SKP280-201	NA	NA	NA	inter
CUST_44225_PI429285431	0.9248967	A	0.90610313	A	1.01311192727692	0	lncRNA	48874-1_{1..3000}	"gi|393195304|ref|NR_072979.1| Homo sapiens aldehyde dehydrogenase 1 family, member L1 (ALDH1L1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393195304|ref|NR_072979.1| Homo sapiens aldehyde dehydrogenase 1 family, member L1 (ALDH1L1), transcript variant 4, non-coding RNA"	Chr3	125822404	125825403	-	10840	NR_072979.1	NA	NA	NA	NA	NA	inter
CUST_1810_PI429285431	0.92575365	A	0.9226803	A	1.0021325545542	0	lncRNA	1797-1_{1..355}	"transcript_id ""ENST00000513155.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513155.1"" | genecode_v17"	chr4	 80517696	 80518050	+	ENSG00000251399.1	ENST00000513155.1	RP11-234K19.1	RP11-234K19.1-001	NA	NA	NA	inter
CUST_4929_PI429285431	0.9158999	A	0.9022106	A	1.00953386013475	0	lncRNA	4872-1_{1..207}	"transcript_id ""ENST00000553679.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553679.1"" | genecode_v17"	chr14	 86798720	 86798926	+	ENSG00000258994.1	ENST00000553679.1	RP11-26L16.1	RP11-26L16.1-001	NA	NA	NA	inter
CUST_45367_PI429285431	1.7662512	A	1.8754437	A	0.927106833545697	0	lncRNA	49803-1_{1..3000}	"gi|341915485|ref|XR_108964.2| PREDICTED: Homo sapiens SPATA31 subfamily B, member 1 (SPATA31B1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915485|ref|XR_108964.2| PREDICTED: Homo sapiens SPATA31 subfamily B, member 1 (SPATA31B1), misc_RNA"	Chr9	 84672562	 84675561	-	404770	XR_108964.3	NA	NA	NA	NA	NA	inter
CUST_46444_PI429285431	7.544273	P	5.9312716	P	3.05887552411542	0	lncRNA	50652-1_{1..3000}	"gi|388596662|ref|NR_051953.1| Homo sapiens Meis homeobox 2 (MEIS2), transcript variant e, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388596662|ref|NR_051953.1| Homo sapiens Meis homeobox 2 (MEIS2), transcript variant e, non-coding RNA"	Chr15	 37183222	 37186221	-	4212	NR_051953.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003666	0.9262091	A	0.914276	A	1.00830569711609	0	lncRNA	TCONS_00008289	NA	NA	NA	NA	XLOC_003735	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003735), lincRNA [TCONS_00008289]"	chr4:152721134-152754024	hs|4q31.3	Agilent_HUMAN_G3V2	TCONS_00008289	TCONS_00008289	chr4	152721134	152754024	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5310_PI429285431	1.9202442	A	1.5269988	A	1.31334450411669	0	lncRNA	5250-1_{1..2012}	"transcript_id ""ENST00000543286.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000543286.1"" | genecode_v17"	chr15	 93855786	 93857797	+	ENSG00000257060.2	ENST00000543286.1	RP11-266O8.1	RP11-266O8.1-003	NA	NA	NA	inter
CUST_28498_PI429285431	2.8925939	A	3.554053	P	0.632238545764129	0	lncRNA	30166-1_{1..604}	n325841|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051103|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051103|-0.6342610|-0.1006169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325841|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051103|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051103|-0.6342610|-0.1006169	chr10	134624833	134625436	-	NA	NA	NA	NA	C10orf92	NA	chr10:134621896-134635731	inner
CUST_28355_PI429285431	1.0277101	A	1.084662	A	0.961292977727067	0	lncRNA	30004-1_{1..778}	n325664|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045423|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045423|-1.1733400|-0.4187537	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325664|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045423|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045423|-1.1733400|-0.4187537	chr13	 88665101	 88665878	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5666_PI429285431	3.8390741	P	3.7330332	P	1.07627063632214	0	lncRNA	5592-1_{1..601}	"transcript_id ""ENST00000602862.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602862.1"" | genecode_v17"	chr16	 85613615	 85614215	-	ENSG00000270124.1	ENST00000602862.1	RP11-118F19.1	RP11-118F19.1-001	NA	NA	NA	inter
CUST_7806_PI429285431	1.1659822	A	1.6465137	A	0.716713532561176	0	lncRNA	9430-1_{1..973}	lnc-NFRKB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NFRKB-2:1	chr11	129486906	129487878	-	lnc-NFRKB-2	lnc-NFRKB-2:1	ENSG00000249683	XLOC_009601	NA	NA	NA	inter
CUST_5225_PI429285431	1.438735	A	1.7058514	A	0.830978813580519	0	lncRNA	5166-1_{1..547}	"transcript_id ""ENST00000561316.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561316.1"" | genecode_v17"	chr15	 70113095	 70113641	-	ENSG00000259309.1	ENST00000561316.1	RP11-19J5.2	RP11-19J5.2-001	NA	NA	NA	inter
CUST_48847_PI429285431	3.6532884	P	3.6084626	P	1.03155861495826	0	lncRNA	52683-1_{1..2124}	hg19_lincRNAsTranscripts_TCONS_l2_00019528 range=chr3:129101709-129115669 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019528 range=chr3:129101709-129115669 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	129101709	129103832	-	NA	NA	NA	NA	C3orf25	NA	chr3:129120164-129125669	inter
CUST_616_PI429285431	0.9222855	A	0.92643005	A	0.997131339345695	0	lncRNA	608-1_{1..448}	"transcript_id ""ENST00000442410.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442410.1"" | genecode_v17"	chr1	239433025	239433472	-	ENSG00000227185.1	ENST00000442410.1	RP11-544D21.1	RP11-544D21.1-001	NA	NA	NA	inter
CUST_44766_PI429285431	0.91884875	A	1.7297888	A	0.570010322162414	0	lncRNA	49309-1_{1..3000}	"gi|299523027|ref|NR_033806.1| Homo sapiens opsin 5 (OPN5), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299523027|ref|NR_033806.1| Homo sapiens opsin 5 (OPN5), transcript variant 2, non-coding RNA"	Chr6	 47754804	 47757803	+	221391	NR_033806.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014382	3.457528	P	3.936936	P	0.717271891222064	0	lncRNA	XR_109530	XR_109530	XR_109530	NA	NA	LOC100507668	uncharacterized LOC100507668	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507668 (LOC100507668), miscRNA [XR_109530]"	chr19:41223750-41223691	hs|19q13.2	Agilent_HUMAN_G3V2	XR_109530	XR_109530	chr19	 41223691	 41223750	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35971_PI429285431	1.63456	A	1.6481643	A	0.990614538785787	0	lncRNA	37319-3_{6001..6289}	n344594|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_142|NULL|-1.3063300|-0.2426910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344594|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_142|NULL|-1.3063300|-0.2426910	chr13	 56116015	 56116303	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46042_PI429285431	8.186541	P	7.432618	P	1.68637221247915	0	lncRNA	50319-1_{1..2035}	"gi|344030198|ref|NR_045018.1| Homo sapiens LETM1 domain containing 1 (LETMD1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|344030198|ref|NR_045018.1| Homo sapiens LETM1 domain containing 1 (LETMD1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_045018.1	NA	NA	NA	NA	NA	Unknown
CUST_4194_PI429285431	3.5535512	P	4.431546	P	0.544123182050605	0	lncRNA	4153-1_{1..265}	"transcript_id ""ENST00000536729.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536729.1"" | genecode_v17"	chr12	 24366277	 24366541	-	ENSG00000255864.1	ENST00000536729.1	RP11-444D3.1	RP11-444D3.1-005	SOX5	NA	chr12:24356277-24520364	inner
CUST_27073_PI429285431	2.4351199	A	2.6334324	A	0.87156942974737	0	lncRNA	28605-1_{1..367}	n324182|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322232|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322232|-1.0493100|-0.2744174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324182|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322232|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322232|-1.0493100|-0.2744174	chr7	154626789	154627155	+	NA	NA	NA	NA	DPP6	NA	chr7:154616789-154637832	inner
CUST_22601_PI429285431	4.97225	P	5.452589	P	0.716809170624708	0	lncRNA	24186-1_{1..610}	lnc-SNURF-3:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SNURF-3:14	chr15	 25438280	 25438889	+	lnc-SNURF-3	lnc-SNURF-3:14	ENSG00000224078.4	SNHG14	SNRPN	NA	chr15:25428280-25448636	inter
CUST_51162_PI429285431	1.5678837	A	1.065582	A	1.41647162333723	0	lncRNA	54785-1_{1..455}	hg19_lincRNAsTranscripts_TCONS_l2_00007710 range=chr14:48663332-48682853 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007710 range=chr14:48663332-48682853 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 48663332	 48663786	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19671_PI429285431	0.9183	A	0.92978567	A	0.992070347118758	0	lncRNA	21327-1_{1..442}	lnc-EMX2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EMX2-3:1	chr10	119804787	119805228	+	lnc-EMX2-3	lnc-EMX2-3:1	ENSG00000231104.1	RP11-354M20.3	RAB11FIP2	"hg19_refFlat_RAB11FIP2:range=chr10:119768509-1198056745'pad=0,hg19_refFlat_RAB11FIP2:range=chr10:119768509-1198056745'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70chr10:119794787-119806114"	NA	inner
CUST_14323_PI429285431	2.7846816	A	3.8138342	P	0.489997875767153	0	lncRNA	15981-1_{1..423}	lnc-UCHL5-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UCHL5-1:6	chr1	192916443	192916865	-	lnc-UCHL5-1	lnc-UCHL5-1:6	XLOC_001134	linc-FAM5C-4	NA	NA	NA	inter
CUST_9854_PI429285431	3.6956687	P	3.064046	A	1.54930662739677	0	lncRNA	11374-1_{1..527}	lnc-KIAA0226L-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA0226L-4:1	chr13	 46851572	 46852098	-	lnc-KIAA0226L-4	lnc-KIAA0226L-4:1	XLOC_010596	linc-LCP1-2	LRRC63	NA	chr13:46841572-46858181	inter
CUST_918_PI429285431	0.9100081	A	0.91333836	A	0.997694301885329	0	lncRNA	908-1_{1..386}	"transcript_id ""ENST00000411701.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411701.1"" | genecode_v17"	chr2	 67148826	 67149211	+	ENSG00000230525.1	ENST00000411701.1	AC007403.2	AC007403.2-001	NA	NA	NA	inter
CUST_4257_PI429285431	0.9070908	A	0.9102144	A	0.997837227636614	0	lncRNA	4214-1_{1..717}	"transcript_id ""ENST00000547954.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547954.1"" | genecode_v17"	chr12	 50318141	 50318857	+	ENSG00000257771.1	ENST00000547954.1	RP11-70F11.8	RP11-70F11.8-002	NA	NA	NA	inter
LNCA_21_P0012039	1.9508429	A	2.454373	A	0.705378691625531	0	lncRNA	ENST00000467633	NA	NA	NA	NA	XLOC_l2_007707	NA	ENST00000467633	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007707), lincRNA [TCONS_l2_00015573]"	chr2:201564854-201564913	hs|2q33.1	Agilent_HUMAN_G3V2	ENST00000467633	ENST00000467633	chr2	201564854	201564913	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014331	7.4008527	P	7.341571	P	1.0419468592328	0	lncRNA	XR_109313	XR_109313	XR_109313	NA	NA	LOC100505942	uncharacterized LOC100505942	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505942, transcript variant 1 (LOC100505942), miscRNA [XR_109313]"	chr16:67551773-67551714	hs|16q22.1	Agilent_HUMAN_G3V2	XR_109313	XR_109313	chr16	 67551714	 67551773	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3397920	0.92495257	A	0.9248748	A	1.00005390750919	0	lncRNA	ENST00000439964	XR_109942	XR_109942	NA	NA	NA	NA	ENST00000439964	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC730184 (LOC730184), miscRNA [XR_109942]"	chr2:64873773-64873832	hs|2p14	Agilent_HUMAN_G3V2	ENST00000439964	ENST00000439964	chr2	 64873773	 64873832	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40573_PI429285431	0.91761255	A	0.9073602	A	1.00713169778763	0	lncRNA	41327-1_{1..927}	n410017|NR_036445|lncRNA|Homosapiens||RefGeneNoncode|NR_036445||5.0071100|-0.2737648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410017|NR_036445|lncRNA|Homosapiens||RefGeneNoncode|NR_036445||5.0071100|-0.2737648	chr11	 56805008	 56805934	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41323_PI429285431	0.92231804	A	0.9281342	A	0.99597666049935	0	lncRNA	42364-1_{1..77}	ENST00000582305 ncrna:miRNA chromosome:GRCh37:1:65045530:65045606:1 gene:ENSG00000264470 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582305 ncrna:miRNA chromosome:GRCh37:1:65045530:65045606:1 gene:ENSG00000264470 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 65045530	 65045606	+	ENSG00000264470	ENST00000582305	NA	NA	CACHD1	NA	chr1:65035530-65055606	inner
CUST_6901_PI429285431	1.3627367	A	1.3545994	A	1.00565628325574	0	lncRNA	6851-1_{1..589}	"transcript_id ""ENST00000584169.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584169.1"" | genecode_v17"	chr21	 46654255	 46654843	+	ENSG00000182586.3	ENST00000584169.1	LINC00334	LINC00334-002	ADARB1	NA	chr21:46644255-46646478	inter
CUST_46933_PI429285431	6.5813575	P	7.10849	P	0.693932624419982	0	lncRNA	51043-1_{1..3000}	"gi|254750689|ref|NR_028133.1| Homo sapiens exocyst complex component 7 (EXOC7), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254750689|ref|NR_028133.1| Homo sapiens exocyst complex component 7 (EXOC7), transcript variant 3, non-coding RNA"	Chr17	 74077086	 74080085	-	23265	NR_028133.1	NA	NA	NA	"hg19_refFlat_ZACN:range=chr17:74075346-740787345'pad=0,hg19_refFlat_ZACN:range=chr17:74075346-740787345'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.40"	NA	inter
CUST_42384_PI429285431	7.5911856	P	7.7164316	P	0.916847694318194	0	lncRNA	45070-1_{1..72}	ENST00000364687 ncrna:snoRNA chromosome:GRCh37:14:101439007:101439078:1 gene:ENSG00000201557 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364687 ncrna:snoRNA chromosome:GRCh37:14:101439007:101439078:1 gene:ENSG00000201557 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101439007	101439078	+	ENSG00000201557	ENST00000364687	NA	NA	NA	NA	NA	inter
CUST_37016_PI429285431	0.9201393	A	0.91944706	A	1.00047993933832	0	lncRNA	38155-1_{1..1101}	n345472|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1021|NULL|-1.3542500|-0.4283285	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345472|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1021|NULL|-1.3542500|-0.4283285	chr1	172867284	172868384	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37438_PI429285431	2.4222035	A	2.0513992	A	1.29307351598602	0	lncRNA	38537-5_{12001..15000}	n345886|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1435|NULL|-1.6761900|-0.2983266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n345886|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1435|NULL|-1.6761900|-0.2983266	chr12	105958681	105961680	+	NA	NA	NA	NA	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_8940_PI429285431	0.9080057	A	0.90445906	A	1.00246136772055	0	lncRNA	10475-1_{1..3000}	lnc-ZNF30-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ZNF30-1:1	chr19	 35416828	 35419827	+	lnc-ZNF30-1	lnc-ZNF30-1:1	ENSG00000248495	XLOC_013047	ZNF30	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50chr19:35417807-35427732"	NA	inter
CUST_7358_PI429285431	6.697642	P	5.8395567	P	1.81263104600085	0	lncRNA	9004-1_{1..2081}	lnc-BRI3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-BRI3-1:1	chr7	 97938682	 97940762	+	lnc-BRI3-1	lnc-BRI3-1:1	ENSG00000229811	ENST00000439540	BAIAP2L1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00chr7:97928682-97949753"	NA	inner
CUST_21096_PI429285431	1.2574685	A	1.9671899	A	0.611438202769199	0	lncRNA	22721-1_{1..433}	lnc-DTL-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DTL-2:4	chr1	212026904	212027336	+	lnc-DTL-2	lnc-DTL-2:4	ENSG00000229258.1	RP11-552D8.1	NA	NA	NA	inter
CUST_57_PI429201921	0.91455877	A	1.0724924	A	0.896307932530959	0	lncRNA	59-1_{1..1674}	TC08002165.hg.1	TCONS_00014550-XLOC_006964 // Rinn lincRNAs // linc-ZNF16 chr8:-:19133-20808 // chr8 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr8:-:19133-20808	NA	Affy_HUMAN_HTA2.0	TCONS_00014550-XLOC_006964	linc-ZNF16	chr8	    19133	    20808	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5919_PI429285431	6.5180063	P	6.9761357	P	0.727929481213982	0	lncRNA	5847-1_{1..635}	"transcript_id ""ENST00000584262.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584262.1"" | genecode_v17"	chr17	 57508230	 57508864	-	ENSG00000265313.1	ENST00000584262.1	RP11-567L7.6	RP11-567L7.6-001	NA	NA	NA	inter
CUST_34611_PI429285431	0.92427814	A	0.92417663	A	1.00007036384572	0	lncRNA	36066-1_{1..1671}	n341496|BC029586|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3966|NULL|-0.8386650|-0.2623247	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341496|BC029586|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3966|NULL|-0.8386650|-0.2623247	chr8	 49623350	 49625020	-	NA	NA	NA	NA	EFCAB1	NA	chr8:49627474-49647870	inter
CUST_37436_PI429285431	7.530081	P	7.598818	P	0.953472345269657	0	lncRNA	38537-3_{6001..9000}	n345886|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1435|NULL|-1.6761900|-0.2983266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n345886|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1435|NULL|-1.6761900|-0.2983266	chr12	105952681	105955680	+	NA	NA	NA	NA	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_37500_PI429285431	6.6709523	P	6.2771587	P	1.31384364790203	0	lncRNA	38603-1_{1..266}	n345968|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1517|NULL|-1.5611600|-0.2337031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345968|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1517|NULL|-1.5611600|-0.2337031	chr13	 41485896	 41486161	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39030_PI429285431	0.9235442	A	0.89724	A	1.01839991221986	0	lncRNA	40010-1_{1..608}	n385390|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xqr.3||-1.0701200|-0.3049861	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385390|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xqr.3||-1.0701200|-0.3049861	chr8	 50047180	 50047787	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30"	NA	inter
CUST_2496_PI429285431	3.5396254	P	4.265707	P	0.604543643471542	0	lncRNA	2488-1_{1..430}	"transcript_id ""ENST00000416595.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416595.1"" | genecode_v17"	chr6	 25053855	 25054284	-	ENSG00000223623.1	ENST00000416595.1	RP3-425P12.1	RP3-425P12.1-001	NA	NA	NA	inter
CUST_32019_PI429285431	0.91525865	A	0.92068195	A	0.99624791163642	0	lncRNA	33740-1_{1..3000}	n338584|AK092600|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|990|NULL|-0.8846430|-0.2838873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338584|AK092600|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|990|NULL|-0.8846430|-0.2838873	chr13	 20241348	 20244347	-	NA	NA	NA	NA	PSPC1	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MPHOSPH8:range=chr13:20207889-202460155'pad=0,hg19_refFlat_MPHOSPH8:range=chr13:20207889-202460155'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00chr13:20248896-20254877"	NA	inner
CUST_50458_PI429285431	0.91216826	A	0.91334873	A	0.99918209521438	0	lncRNA	54161-5_{12001..15000}	hg19_lincRNAsTranscripts_TCONS_l2_00030253 range=chrX:73164177-73234961 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030253 range=chrX:73164177-73234961 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 73176177	 73179176	+	NA	NA	NA	NA	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_50710_PI429285431	7.023837	P	6.871786	P	1.11114800760537	0	lncRNA	54381-1_{1..1355}	hg19_lincRNAsTranscripts_TCONS_l2_00003651 range=chr10:81629908-81634783 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003651 range=chr10:81629908-81634783 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 81629908	 81631262	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2598_PI429285431	1.1833014	A	1.1117952	A	1.0508131793143	0	lncRNA	2585-1_{1..632}	"transcript_id ""ENST00000419801.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419801.1"" | genecode_v17"	chr6	108596846	108597477	+	ENSG00000230248.1	ENST00000419801.1	RP1-128O3.4	RP1-128O3.4-001	NA	NA	NA	inter
CUST_26146_PI429285431	8.860522	P	8.865002	P	0.996899517086374	0	lncRNA	27657-1_{1..499}	lnc-NSMCE1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NSMCE1-3:1	chr16	 27078743	 27079241	-	lnc-NSMCE1-3	lnc-NSMCE1-3:1	ENSG00000261482.1	RP11-673P17.2	C16orf82	"hg19_refFlat_C16orf82:range=chr16:27078317-270787815'pad=0,hg19_refFlat_C16orf82:range=chr16:27078317-270787815'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80chr16:27078219-27080487"	NA	inner
CUST_44407_PI429285431	4.2791195	P	4.436098	P	0.896901525784842	0	lncRNA	49022-1_{1..1627}	"gi|382543523|ref|NR_047513.1| Homo sapiens solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 (SLC9B1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|382543523|ref|NR_047513.1| Homo sapiens solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 (SLC9B1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_047513.1	NA	NA	NA	"hg19_refFlat_CISD2:range=chr4:103790242-1038085875'pad=0,hg19_refFlat_CISD2:range=chr4:103790242-1038085875'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00"	NA	Unknown
CUST_12398_PI429285431	1.5296259	A	1.1787817	A	1.27530666090304	0	lncRNA	14011-2_{3001..6000}	lnc-TCF12-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF12-1:3	chr15	 57602740	 57605739	+	lnc-TCF12-1	lnc-TCF12-1:3	XLOC_011264	linc-CGNL1-2	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.61;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.81;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50"	NA	inter
CUST_3191_PI429285431	1.086227	A	1.2486352	A	0.893532308161714	0	lncRNA	3170-1_{1..1663}	"transcript_id ""ENST00000518732.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518732.1"" | genecode_v17"	chr8	 77318889	 77320551	+	ENSG00000254300.1	ENST00000518732.1	RP11-706J10.1	RP11-706J10.1-001	NA	NA	NA	inter
CUST_33349_PI429285431	2.1026378	A	3.0542388	A	0.517058348968443	0	lncRNA	34930-1_{1..2885}	n340067|BC043233|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2522|NULL|0.1514510|-0.3285891	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340067|BC043233|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2522|NULL|0.1514510|-0.3285891	chr10	 75008049	 75010933	+	NA	NA	NA	NA	FAM149B1	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TTC18:range=chr10:75013733-751145545'pad=0,hg19_refFlat_TTC18:range=chr10:75013733-751145545'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60chr10:74998049-75001939"	NA	inner
CUST_23294_PI429285431	9.226957	P	9.302649	P	0.948886870741765	0	lncRNA	24865-1_{1..523}	lnc-DLX5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DLX5-2:2	chr7	 96643237	 96643759	-	lnc-DLX5-2	lnc-DLX5-2:2	ENSG00000231764.2	DLX6-AS1	DLX5	NA	chr7:96649702-96653376	inter
CUST_46442_PI429285431	2.082878	A	2.0761905	A	1.00464618195706	0	lncRNA	50650-1_{1..709}	"gi|397139571|ref|XR_109174.2| PREDICTED: Homo sapiens uncharacterized LOC100507480 (LOC100507480), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139571|ref|XR_109174.2| PREDICTED: Homo sapiens uncharacterized LOC100507480 (LOC100507480), misc_RNA"	Chr15	 36338206	 36338914	+	100507480	XR_109174.2	NA	NA	NA	NA	NA	inter
CUST_2964_PI429285431	5.25255	P	4.8576565	P	1.3148456944835	0	lncRNA	2943-2_{3001..4013}	"transcript_id ""ENST00000330148.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000330148.2"" | genecode_v17"	chr8	   328931	   329943	-	ENSG00000182366.4	ENST00000330148.2	FAM87A	FAM87A-001	NA	NA	NA	inter
LNCA_21_P0005110	2.3604348	A	2.4912016	A	0.913345873063469	0	lncRNA	TCONS_00012436	NA	NA	NA	NA	XLOC_005201	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005201), lincRNA [TCONS_00012436]"	chr6:23351620-23370190	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00012436	TCONS_00012436	chr6	 23351620	 23370190	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33710_PI429285431	1.9618598	A	1.7939525	A	1.12342771515263	0	lncRNA	35270-1_{1..655}	n340488|AF147409|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2949|NULL|-1.0533200|-0.4315101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340488|AF147409|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2949|NULL|-1.0533200|-0.4315101	chr5	 65958158	 65958812	-	NA	NA	NA	NA	MAST4	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-20.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70chr5:65948158-65968816"	NA	inner
CUST_33611_PI429285431	1.0915179	A	1.4675047	A	0.770578158763985	0	lncRNA	35176-1_{1..202}	n340368|U10512|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2829|NULL|-1.4351900|-0.2064100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340368|U10512|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2829|NULL|-1.4351900|-0.2064100	chr5	 10082682	 10082883	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19550_PI429285431	2.0305839	A	0.8940035	A	2.19859275689367	0	lncRNA	21206-1_{1..777}	lnc-RP11-539E17.5.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-539E17.5.1-1:1	chr8	124194767	124195543	-	lnc-RP11-539E17.5.1-1	lnc-RP11-539E17.5.1-1:1	ENSG00000253258.1	RP11-539E17.5	FAM83A	NA	chr8:124194752-124205028	inner
CUST_43436_PI429285431	4.0069094	P	4.516249	P	0.702543956861089	0	lncRNA	48244-1_{1..1574}	"gi|299782494|ref|NR_033827.1| Homo sapiens KDM4A antisense RNA 1 (KDM4A-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299782494|ref|NR_033827.1| Homo sapiens KDM4A antisense RNA 1 (KDM4A-AS1), non-coding RNA"	Chr1	 44165395	 44166968	-	100132774	NR_033827.1	NA	NA	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-21.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30"	NA	inter
LNCA_21_P0011272	0.9139087	A	0.9016224	A	1.00855258031727	0	lncRNA	TCONS_l2_00008270	NA	NA	NA	NA	XLOC_l2_004537	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004537), lincRNA [TCONS_l2_00008270]"	chr14:103739630-103734637	hs|14q32.32	Agilent_HUMAN_G3V2	TCONS_l2_00008270	TCONS_l2_00008270	chr14	103734637	103739630	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37620_PI429285431	3.5723705	P	4.2393923	P	0.629805473157839	0	lncRNA	38717-1_{1..293}	n346098|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1648|NULL|-1.7378000|-0.0859786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346098|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1648|NULL|-1.7378000|-0.0859786	chr5	 71853085	 71853377	+	NA	NA	NA	NA	LOC389300	NA	chr5:71869991-71875764	inter
LNCA_21_P0001736	0.9199791	A	0.9005108	A	1.0135858575715	0	lncRNA	TCONS_00002428	NA	NA	NA	NA	XLOC_000950	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000950), lincRNA [TCONS_00002428]"	chr1:106590775-106590716	hs|1p21.1	Agilent_HUMAN_G3V2	TCONS_00002428	TCONS_00002428	chr1	106590716	106590775	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22378_PI429285431	5.6893954	P	5.6275473	P	1.04380202070566	0	lncRNA	23971-1_{1..3000}	lnc-ZNF862-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:7	chr7	149494360	149497359	+	lnc-ZNF862-1	lnc-ZNF862-1:7	ENSG00000197558.7	SSPO	SSPO	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00chr7:149484360-149506170"	NA	inner
CUST_9594_PI429285431	0.9019494	A	0.8921714	A	1.00680061299288	0	lncRNA	11109-1_{1..568}	lnc-IGF1R-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGF1R-1:1	chr15	 99560734	 99561301	+	lnc-IGF1R-1	lnc-IGF1R-1:1	XLOC_011378	linc-SYNM-3	PGPEP1L	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20chr15:99550734-99551024"	NA	inter
CUST_1789_PI429285431	0.9039654	A	1.026827	A	0.918364258200195	0	lncRNA	1775-1_{1..596}	"transcript_id ""ENST00000506379.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506379.1"" | genecode_v17"	chr4	 62009374	 62009969	+	ENSG00000240152.2	ENST00000506379.1	RP11-16N2.1	RP11-16N2.1-001	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
CUST_46089_PI429285431	2.8247504	A	3.1408234	P	0.803253351314629	0	lncRNA	50356-1_{1..1386}	"gi|310122929|ref|XR_110371.1| PREDICTED: Homo sapiens uncharacterized LOC100507065, transcript variant 3 (LOC100507065), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310122929|ref|XR_110371.1| PREDICTED: Homo sapiens uncharacterized LOC100507065, transcript variant 3 (LOC100507065), misc_RNA"	NA	NA	NA	NA	NA	XR_110371.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004654	0.91192216	A	0.89946544	A	1.00867172377994	0	lncRNA	ENST00000415106	XR_108661	XR_108661	NA	NA	XLOC_005315	NA	ENST00000415106	THC2650975	NA	"PREDICTED: Homo sapiens hypothetical LOC100505985 (LOC100505985), miscRNA [XR_108661]"	chr6:50066852-50066911	hs|6p12.3	Agilent_HUMAN_G3V2	ENST00000415106	ENST00000415106	chr6	 50066852	 50066911	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5097_PI429285431	0.90283984	A	0.9000631	A	1.00192654290587	0	lncRNA	5037-1_{1..420}	"transcript_id ""ENST00000563016.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563016.1"" | genecode_v17"	chr15	 24220319	 24220738	+	ENSG00000260232.1	ENST00000563016.1	RP11-484P15.2	RP11-484P15.2-001	NA	NA	NA	inter
CUST_1881_PI429285431	0.9292746	A	0.902705	A	1.01858727558592	0	lncRNA	1871-1_{1..575}	"transcript_id ""ENST00000503542.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503542.1"" | genecode_v17"	chr4	130220330	130220904	-	ENSG00000250193.1	ENST00000503542.1	RP11-419L4.1	RP11-419L4.1-001	NA	NA	NA	inter
CUST_48344_PI429285431	4.7314057	P	4.590317	P	1.10273695962934	0	lncRNA	52199-1_{1..384}	hg19_lincRNAsTranscripts_TCONS_l2_00000307 range=chr1:59486079-59488732 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000307 range=chr1:59486079-59488732 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 59486079	 59486462	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010147	0.911602	A	0.8991177	A	1.00869100674083	0	lncRNA	ENST00000444130	NA	NA	NA	NA	XLOC_013880	NA	ENST00000444130	NA	NA	"BROAD Institute lincRNA (XLOC_013880), lincRNA [TCONS_00028806]"	chr21:23585123-23793139	hs|21q21.1	Agilent_HUMAN_G3V2	ENST00000444130	ENST00000444130	chr21	 23585123	 23793139	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008073	0.9115508	A	0.8990813	A	1.00868065905826	0	lncRNA	TCONS_00021813	NA	NA	NA	NA	XLOC_010414	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010414), lincRNA [TCONS_00021813]"	chr13:66510421-66510480	hs|13q21.32	Agilent_HUMAN_G3V2	TCONS_00021813	TCONS_00021813	chr13	 66510421	 66510480	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27613_PI429285431	2.0689952	A	1.843328	A	1.169317895409	0	lncRNA	29190-1_{1..753}	n324815|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000139726|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000139726|-0.6831890|-0.1771918	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324815|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000139726|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000139726|-0.6831890|-0.1771918	chr21	 33352004	 33352756	+	NA	NA	NA	NA	HUNK	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00chr21:33342004-33369159"	NA	inner
CUST_4982_PI429285431	5.5854177	P	6.0632553	P	0.718053079916913	0	lncRNA	4926-1_{1..423}	"transcript_id ""ENST00000554515.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554515.1"" | genecode_v17"	chr14	 98963469	 98963891	+	ENSG00000258795.1	ENST00000554515.1	RP11-1082A3.1	RP11-1082A3.1-001	NA	NA	NA	inter
CUST_37127_PI429285431	0.9021386	A	0.8947784	A	1.00511473771828	0	lncRNA	38250-1_{1..1936}	n345568|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1117|NULL|-1.3257300|-0.2942127	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345568|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1117|NULL|-1.3257300|-0.2942127	chr2	217080781	217082716	+	NA	NA	NA	NA	XRCC5	NA	chr2:217070781-217071016	inter
CUST_34678_PI429285431	1.3110924	A	1.9063516	A	0.661925520493187	0	lncRNA	36131-1_{1..1692}	n341584|AK057158|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4055|NULL|-0.9220130|-0.3931576	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341584|AK057158|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4055|NULL|-0.9220130|-0.3931576	chr8	110310826	110312517	+	NA	NA	NA	NA	NUDCD1	NA	chr8:110300826-110338791	inner
CUST_42373_PI429285431	5.1203184	P	5.6152773	P	0.709581892628938	0	lncRNA	45051-1_{1..132}	ENST00000384339 ncrna:snoRNA chromosome:GRCh37:8:99054314:99054445:-1 gene:ENSG00000207067 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384339 ncrna:snoRNA chromosome:GRCh37:8:99054314:99054445:-1 gene:ENSG00000207067 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	 99054314	 99054445	-	ENSG00000207067	ENST00000384339	NA	NA	MATN2	NA	chr8:99044314-99048948	inner
CUST_38004_PI429285431	1.0972184	A	0.9612139	A	1.09885764508689	0	lncRNA	39089-2_{3001..3566}	n377577|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029940||0.2537680|-0.3364523	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377577|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029940||0.2537680|-0.3364523	chr6	  4134252	  4134817	+	NA	NA	NA	NA	C6orf201	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ECI2:range=chr6:4116108-41357945'pad=0,hg19_refFlat_ECI2:range=chr6:4116108-41357945'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ECI2:range=chr6:4116108-41339055'pad=0,hg19_refFlat_ECI2:range=chr6:4116108-41339055'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00chr6:4121252-4130999"	NA	inner
CUST_51173_PI429285431	3.2087784	P	3.09884	A	1.07918215674521	0	lncRNA	54794-1_{1..358}	hg19_lincRNAsTranscripts_TCONS_l2_00007762 range=chr14:62120352-62124456 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007762 range=chr14:62120352-62124456 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 62120352	 62120709	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2759_PI429285431	0.9262176	A	0.9043069	A	1.01530325363971	0	lncRNA	2742-1_{1..781}	"transcript_id ""ENST00000599208.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599208.1"" | genecode_v17"	chr7	  7778270	  7779050	-	ENSG00000234718.5	ENST00000599208.1	AC007161.5	AC007161.5-003	NA	NA	NA	inter
CUST_34858_PI429285431	3.1465087	A	2.9244003	A	1.16643700925357	0	lncRNA	36284-1_{1..691}	n341764|AF086214|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4239|NULL|-1.1781600|-0.2100422	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341764|AF086214|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4239|NULL|-1.1781600|-0.2100422	chr9	117664202	117664892	+	NA	NA	NA	NA	TNFSF8	NA	chr9:117665124-117674893	inner
CUST_6820_PI429285431	0.91283584	A	0.9037092	A	1.00634615684637	0	lncRNA	6768-1_{1..309}	"transcript_id ""ENST00000444178.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444178.1"" | genecode_v17"	chr21	 26310745	 26311053	-	ENSG00000230379.1	ENST00000444178.1	AP000146.2	AP000146.2-001	NA	NA	NA	inter
CUST_40906_PI429285431	6.6483293	P	6.944314	P	0.814516201092419	0	lncRNA	41592-1_{1..1673}	n410742|NR_038190_7|lncRNA|Homosapiens||RefGeneNoncode|NR_038190_7||-0.4390920|-0.3342021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410742|NR_038190_7|lncRNA|Homosapiens||RefGeneNoncode|NR_038190_7||-0.4390920|-0.3342021	chr6	  3619425	  3621097	-	NA	NA	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90"	NA	inter
CUST_39835_PI429285431	5.937926	P	6.0491114	P	0.925827037324251	0	lncRNA	40740-2_{3001..6000}	n406441|NR_022012|lncRNA|Homosapiens||RefGeneNoncode|NR_022012||17.5057000|-0.3286454	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406441|NR_022012|lncRNA|Homosapiens||RefGeneNoncode|NR_022012||17.5057000|-0.3286454	chr3	130067358	130070357	+	NA	NA	NA	NA	COL6A5	NA	chr3:130064359-130203688	inner
CUST_23158_PI429285431	6.43712	P	6.3829765	P	1.03824253588346	0	lncRNA	24729-1_{1..361}	lnc-FSCN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FSCN2-1:1	chr17	 79494083	 79494443	+	lnc-FSCN2-1	lnc-FSCN2-1:1	ENSG00000229848.1	RP13-766D20.2	FSCN2	NA	chr17:79495417-79504156	inter
CUST_9087_PI429285431	0.91235477	A	0.90885377	A	1.0024296551189	0	lncRNA	10608-1_{1..640}	lnc-ACACA-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ACACA-1:4	chr17	 35293863	 35294502	-	lnc-ACACA-1	lnc-ACACA-1:4	ENSG00000255509	RP11-445F12.1	LHX1	NA	chr17:35294772-35301915	inter
CUST_46431_PI429285431	2.3950393	A	2.8380089	P	0.73561887348586	0	lncRNA	50642-1_{1..3000}	"gi|333470724|ref|NR_038253.1| Homo sapiens OTU domain containing 7A pseudogene (LOC100288637), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|333470724|ref|NR_038253.1| Homo sapiens OTU domain containing 7A pseudogene (LOC100288637), transcript variant 1, non-coding RNA"	Chr15	 30938318	 30941317	+	100288637	NR_038253.1	NA	NA	NA	"hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60"	NA	inter
CUST_14677_PI429285431	2.9039345	A	3.2057986	P	0.811203566300963	0	lncRNA	16345-1_{1..818}	lnc-AC027763.2.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC027763.2.1-2:2	chr17	  6859907	  6860724	-	lnc-AC027763.2.1-2	lnc-AC027763.2.1-2:2	XLOC_012371	linc-TEKT1-2	NA	NA	NA	inter
CUST_5549_PI429285431	0.9283333	A	0.91149235	A	1.01174165535981	0	lncRNA	5479-1_{1..515}	"transcript_id ""ENST00000564361.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564361.1"" | genecode_v17"	chr16	 52641385	 52641899	+	ENSG00000260963.1	ENST00000564361.1	RP11-297L17.2	RP11-297L17.2-003	NA	NA	NA	inter
CUST_25341_PI429285431	10.837735	P	10.977802	P	0.907477010324758	0	lncRNA	26872-1_{1..465}	lnc-B3GAT2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-B3GAT2-2:4	chr6	 72020253	 72020717	-	lnc-B3GAT2-2	lnc-B3GAT2-2:4	ENSG00000232295.1	RP11-154D6.1	OGFRL1	NA	chr6:72010253-72011973	inter
CUST_23838_PI429285431	0.9163461	A	0.9167864	A	0.999694853862955	0	lncRNA	25401-1_{1..277}	lnc-SDCCAG8-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SDCCAG8-2:2	chr1	243332528	243332804	+	lnc-SDCCAG8-2	lnc-SDCCAG8-2:2	ENSG00000232085.1	RP11-261C10.4	CEP170	"hg19_refFlat_CEP170:range=chr1:243289751-2433885825'pad=0,hg19_refFlat_CEP170:range=chr1:243289751-2433885825'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80chr1:243322528-243342689"	NA	inner
CUST_11561_PI429285431	10.923079	P	12.007391	P	0.471617121593924	0	lncRNA	13138-1_{1..2148}	lnc-BIRC7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BIRC7-1:2	chr20	 61750468	 61752615	+	lnc-BIRC7-1	lnc-BIRC7-1:2	XLOC_013608	linc-BIRC7-2	NA	NA	NA	inter
LNCA_21_P0005025	0.9220851	A	1.2142961	A	0.816649544068015	0	lncRNA	TCONS_00012168	NA	NA	NA	NA	XLOC_005716	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005716), lincRNA [TCONS_00012168]"	chr6:41144873-41144814	hs|6p21.1	Agilent_HUMAN_G3V2	TCONS_00012168	TCONS_00012168	chr6	 41144814	 41144873	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36445_PI429285431	3.074639	P	2.7630215	P	1.24109839697741	0	lncRNA	37659-1_{1..530}	n344959|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_508|NULL|-1.3627700|-0.2296143	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344959|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_508|NULL|-1.3627700|-0.2296143	chr7	 77313167	 77313696	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15493_PI429285431	0.98178375	A	0.91464293	A	1.0476383810293	0	lncRNA	17182-1_{1..562}	lnc-FTH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FTH1-1:1	chr11	 61743946	 61744507	-	lnc-FTH1-1	lnc-FTH1-1:1	XLOC_009451	linc-FTH1-3	FTH1	NA	chr11:61733946-61735132	inter
CUST_18176_PI429285431	3.25484	P	4.197341	P	0.520330074136785	0	lncRNA	19912-1_{1..609}	lnc-C7orf65-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C7orf65-3:3	chr7	 47011875	 47012483	+	lnc-C7orf65-3	lnc-C7orf65-3:3	ENSG00000223829	AC004870.4	NA	NA	NA	inter
LNCA_32_P63562	1.4195457	A	0.91526175	A	1.418419180254	0	lncRNA	XR_132800	XR_132800	XR_132800	100132240	Hs.659312	LOC100132240	uncharacterized LOC100132240	NA	THC2611210	NA	"PREDICTED: Homo sapiens hypothetical LOC100132240 (LOC100132240), miscRNA [XR_132800]"	chr1:94218900-94218841	hs|1p22.1	Agilent_HUMAN_G3V2	XR_132800	XR_132800	chr1	 94218841	 94218900	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7304_PI429285431	0.91141635	A	0.9114771	A	0.999957892195339	0	lncRNA	8427-1_{1..307}	"transcript_id ""ENST00000517028.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517028.1"" | genecode_v17"	chr14	 58304072	 58304378	-	ENSG00000252837.1	ENST00000517028.1	RN7SKP99	RN7SKP99-201	SLC35F4	NA	chr14:58294072-58314378	inner
CUST_3879_PI429285431	0.9143814	A	0.90140826	A	1.00903284756358	0	lncRNA	3848-1_{1..683}	"transcript_id ""ENST00000534068.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534068.1"" | genecode_v17"	chr11	 23752134	 23752816	+	ENSG00000255193.1	ENST00000534068.1	RP11-945A11.1	RP11-945A11.1-001	NA	NA	NA	inter
CUST_25017_PI429285431	0.90420604	A	0.9042425	A	0.999974728173135	0	lncRNA	26557-1_{1..307}	lnc-ZNF131-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF131-2:2	chr5	 43024301	 43024607	+	lnc-ZNF131-2	lnc-ZNF131-2:2	ENSG00000251131.1	CTD-2035E11.3	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	inter
CUST_50982_PI429285431	7.142031	P	7.142948	P	0.999364585996462	0	lncRNA	54625-1_{1..459}	hg19_lincRNAsTranscripts_TCONS_l2_00005906 range=chr12:115026038-115026592 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005906 range=chr12:115026038-115026592 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	115026038	115026496	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27524_PI429285431	4.1607313	P	4.1366453	P	1.01683528570534	0	lncRNA	29100-1_{1..451}	n324709|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000321813|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000321813|-0.2346810|-0.2270023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324709|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000321813|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000321813|-0.2346810|-0.2270023	chr22	 21365262	 21365712	-	NA	NA	NA	NA	P2RX6	NA	chr22:21369442-21375797	inter
CUST_31545_PI429285431	0.91917956	A	1.10328	A	0.880197732325442	0	lncRNA	33304-1_{1..646}	n338034|AF085891|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|421|NULL|-1.3366900|-0.3697738	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338034|AF085891|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|421|NULL|-1.3366900|-0.3697738	chr1	 85921606	 85922251	-	NA	NA	NA	NA	DDAH1	NA	chr1:85911606-85932252	inner
CUST_43316_PI429285431	13.776573	P	13.86239	P	0.942250787005954	0	lncRNA	48147-1_{1..1460}	ENST00000428520 havana:lincRNA chromosome:GRCh37:10:10976487:10994058:-1 gene:ENSG00000229240 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,ensembl.GRCh37.72,"	>ENST00000428520 havana:lincRNA chromosome:GRCh37:10:10976487:10994058:-1 gene:ENSG00000229240 gene_biotype:lincRNA transcript_biotype:lincRNA	chr10	 10976487	 10977946	-	ENSG00000229240	ENST00000428520	NA	NA	NA	NA	NA	inter
CUST_13658_PI429285431	0.91084087	A	0.8889172	A	1.01531238137774	0	lncRNA	15296-2_{3001..6000}	lnc-MTR-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTR-1:2	chr1	237087732	237090731	+	lnc-MTR-1	lnc-MTR-1:2	XLOC_000633	linc-RYR2-2	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF680:range=chr7:63986777-640233325'pad=0,hg19_refFlat_ZNF680:range=chr7:63986777-640233325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-36.51;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.92;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.74;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00"	NA	inter
CUST_2693_PI429285431	0.8981994	A	0.8955435	A	1.00184262514804	0	lncRNA	2679-1_{1..310}	"transcript_id ""ENST00000437861.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437861.1"" | genecode_v17"	chr6	161293920	161294229	-	ENSG00000224371.1	ENST00000437861.1	RP11-235G24.1	RP11-235G24.1-004	NA	NA	NA	inter
CUST_6380_PI429285431	3.7327235	P	3.9604156	P	0.853999955628547	0	lncRNA	6306-1_{1..306}	"transcript_id ""ENST00000586816.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586816.1"" | genecode_v17"	chr19	 19882381	 19882686	-	ENSG00000266904.1	ENST00000586816.1	LINC00663	LINC00663-003	NA	NA	NA	inter
CUST_11429_PI429285431	4.5035105	P	4.745937	P	0.845322350094449	0	lncRNA	12997-1_{1..732}	lnc-EFCAB1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-EFCAB1-4:1	chr8	 49429618	 49430349	-	lnc-EFCAB1-4	lnc-EFCAB1-4:1	XLOC_007080	linc-PRKDC-1	NA	NA	NA	inter
LNCA_21_P0003177	0.957833	A	0.9205406	A	1.02618610779925	0	lncRNA	TCONS_00006665	NA	NA	NA	NA	XLOC_003261	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003261), lincRNA [TCONS_00006665]"	chr3:134043169-134043110	hs|3q22.2	Agilent_HUMAN_G3V2	TCONS_00006665	TCONS_00006665	chr3	134043110	134043169	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16029_PI429285431	8.496862	P	8.43152	P	1.0463329502503	0	lncRNA	17726-1_{1..755}	lnc-PRKAA2-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PRKAA2-7:2	chr1	 56345066	 56345820	+	lnc-PRKAA2-7	lnc-PRKAA2-7:2	XLOC_000208	linc-PRKAA2-7	NA	"hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0,hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20"	NA	inter
CUST_52129_PI429285431	0.9045871	A	0.89988595	A	1.00326390384013	0	lncRNA	55653-1_{1..1844}	hg19_lincRNAsTranscripts_TCONS_l2_00017605 range=chr22:20380034-20381935 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017605 range=chr22:20380034-20381935 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 20380034	 20381877	+	NA	NA	NA	NA	TMEM191B	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00chr22:20370034-20380440"	NA	inner
CUST_14864_PI429285431	3.4034994	P	2.5437453	A	1.81472897298929	0	lncRNA	16527-1_{1..470}	lnc-IRF2BPL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRF2BPL-2:1	chr14	 77552710	 77553179	-	lnc-IRF2BPL-2	lnc-IRF2BPL-2:1	XLOC_011080	linc-C14orf4-1	NA	NA	NA	inter
CUST_36486_PI429285431	1.1031889	A	1.2072209	A	0.930429019898076	0	lncRNA	37688-1_{1..919}	n344988|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_537|NULL|-1.4083100|-0.2981738	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344988|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_537|NULL|-1.4083100|-0.2981738	chr8	  6526842	  6527760	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26713_PI429285431	7.290971	P	7.286718	P	1.00295230445113	0	lncRNA	28209-1_{1..2098}	n1845|AF400497|UBE3AantisenseRNA|Homosapiens|UBE3AantisenseRNA|NONCODEv2.0|n1845|NULL|-0.3328990|-0.1905799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n1845|AF400497|UBE3AantisenseRNA|Homosapiens|UBE3AantisenseRNA|NONCODEv2.0|n1845|NULL|-0.3328990|-0.1905799	chr15	 25442574	 25444671	+	NA	NA	NA	NA	SNRPN	NA	chr15:25432574-25469165	inter
CUST_19584_PI429285431	4.0640793	P	4.284568	P	0.85827465435264	0	lncRNA	21240-1_{1..544}	lnc-SRGAP3-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRGAP3-1:8	chr3	  9439108	  9439651	-	lnc-SRGAP3-1	lnc-SRGAP3-1:8	ENSG00000206573.4	RP11-58B17.1	LOC100652926	NA	chr3:9435634-9438752	inter
CUST_25160_PI429285431	1.3797226	A	0.9642825	A	1.33370546732808	0	lncRNA	26697-1_{1..559}	lnc-TNPO3-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNPO3-1:10	chr7	128502579	128503137	-	lnc-TNPO3-1	lnc-TNPO3-1:10	ENSG00000242902.1	RP11-309L24.2	FLNC	"hg19_refFlat_FLNC:range=chr7:128470692-1284985775'pad=0,hg19_refFlat_FLNC:range=chr7:128470692-1284985775'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.10chr7:128492579-128499328"	NA	inter
CUST_35020_PI429285431	1.065738	A	1.6878084	A	0.649737824832655	0	lncRNA	36434-1_{1..569}	n341957|AF088045|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4438|NULL|-0.8415490|-0.4114958	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341957|AF088045|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4438|NULL|-0.8415490|-0.4114958	chr12	 68074919	 68075487	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20227_PI429285431	4.2206187	P	4.2145543	P	1.0042123689515	0	lncRNA	21871-1_{1..589}	lnc-ATP11B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATP11B-2:1	chr3	182734859	182735447	+	lnc-ATP11B-2	lnc-ATP11B-2:1	ENSG00000243368.1	MCCC1-AS1	MCCC1	"hg19_refFlat_MCCC1:range=chr3:182733226-1828172285'pad=0,hg19_refFlat_MCCC1:range=chr3:182733226-1828172285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60chr3:182733006-182745420"	NA	inner
CUST_9859_PI429285431	1.0885837	A	4.4509654	P	0.0972349178076719	0	lncRNA	11380-1_{1..708}	lnc-ZMAT4-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZMAT4-3:2	chr8	 40210463	 40211170	-	lnc-ZMAT4-3	lnc-ZMAT4-3:2	XLOC_007065	linc-ADAM2-1	NA	NA	NA	inter
LNCA_21_P0012542	0.91400546	A	0.91970533	A	0.996056945515016	0	lncRNA	XR_109995	XR_109995	XR_109995	NA	Hs.559386	LOC285286	uncharacterized LOC285286	NA	THC2713564	NA	"PREDICTED: Homo sapiens hypothetical LOC285286 (LOC285286), miscRNA [XR_109995]"	chr3:72110143-72110084	hs|3p13	Agilent_HUMAN_G3V2	XR_109995	XR_109995	chr3	 72110084	 72110143	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12037_PI429285431	3.3459356	P	3.275599	A	1.04996162510255	0	lncRNA	13621-1_{1..478}	lnc-RGL4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGL4-4:1	chr22	 23838524	 23839001	+	lnc-RGL4-4	lnc-RGL4-4:1	XLOC_014172	linc-RGL4-6	NA	NA	NA	inter
CUST_49719_PI429285431	4.610669	P	4.7737956	P	0.893087478314898	0	lncRNA	53495-1_{1..759}	hg19_lincRNAsTranscripts_TCONS_l2_00027079 range=chr7:26488016-26533946 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027079 range=chr7:26488016-26533946 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 26488016	 26488774	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37850_PI429285431	1.1184648	A	0.989729	A	1.09333521723487	0	lncRNA	38941-1_{1..1518}	n346380|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1930|NULL|-1.3173300|-0.2475859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346380|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1930|NULL|-1.3173300|-0.2475859	chr5	172720092	172721609	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45295_PI429285431	1.2251065	A	0.89931893	A	1.2533484572391	0	lncRNA	49741-1_{1..3000}	"gi|390979640|ref|NR_052005.1| Homo sapiens CD274 molecule (CD274), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|390979640|ref|NR_052005.1| Homo sapiens CD274 molecule (CD274), transcript variant 3, non-coding RNA"	Chr9	  5450503	  5453502	+	29126	NR_052005.1	NA	NA	NA	NA	NA	inter
CUST_14390_PI429285431	0.9169117	A	0.9182234	A	0.999091212041395	0	lncRNA	16052-1_{1..395}	lnc-NOL6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOL6-2:1	chr9	 33514622	 33515016	-	lnc-NOL6-2	lnc-NOL6-2:1	XLOC_007669	linc-NOL6-3	NA	NA	NA	inter
CUST_176_PI429285431	2.419744	A	2.7978709	A	0.76943592722937	0	lncRNA	166-1_{1..2493}	"transcript_id ""ENST00000431027.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431027.1"" | genecode_v17"	chr1	 20484185	 20486677	+	ENSG00000227066.1	ENST00000431027.1	RP3-340N1.2	RP3-340N1.2-002	PLA2G2C	NA	chr1:20490484-20497059	inter
CUST_268_PI429285431	1.4079926	A	0.91335416	A	1.40896760346938	0	lncRNA	260-1_{1..859}	"transcript_id ""ENST00000449140.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449140.2"" | genecode_v17"	chr1	 63715591	 63716449	+	ENSG00000228734.2	ENST00000449140.2	RP11-335E6.3	RP11-335E6.3-001	NA	NA	NA	inter
CUST_34886_PI429285431	1.0555835	A	0.8954513	A	1.11738952431678	0	lncRNA	36311-1_{1..1951}	n341801|AK096407|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4279|NULL|0.4123010|-0.2164415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341801|AK096407|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4279|NULL|0.4123010|-0.2164415	chr9	137190308	137192258	+	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70"	NA	inter
CUST_44897_PI429285431	4.5199056	P	5.027568	P	0.703361171778086	0	lncRNA	49418-1_{1..940}	"gi|397139184|ref|XR_108761.3| PREDICTED: Homo sapiens uncharacterized LOC401317 (LOC401317), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139184|ref|XR_108761.3| PREDICTED: Homo sapiens uncharacterized LOC401317 (LOC401317), misc_RNA"	NA	NA	NA	NA	NA	XR_108761.3	NA	NA	NA	NA	NA	Unknown
CUST_49578_PI429285431	6.216869	P	6.528613	P	0.80566724053541	0	lncRNA	53367-1_{1..208}	hg19_lincRNAsTranscripts_TCONS_l2_00024933 range=chr6:137865118-137865527 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024933 range=chr6:137865118-137865527 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	137865118	137865325	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002901	1.0805767	A	0.9240724	A	1.1145831898825	0	lncRNA	ENST00000486767	NA	NA	NA	NA	XLOC_003313	NA	ENST00000486767	NA	NA	"BROAD Institute lincRNA (XLOC_003313), lincRNA [TCONS_00005874]"	chr3:164401664-164401605	hs|3q26.1	Agilent_HUMAN_G3V2	ENST00000486767	ENST00000486767	chr3	164401605	164401664	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42447_PI429285431	7.841796	P	8.095584	P	0.838691418743801	0	lncRNA	45174-1_{1..139}	ENST00000384679 ncrna:snoRNA chromosome:GRCh37:17:65267585:65267723:1 gene:ENSG00000207410 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384679 ncrna:snoRNA chromosome:GRCh37:17:65267585:65267723:1 gene:ENSG00000207410 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 65267585	 65267723	+	ENSG00000207410	ENST00000384679	NA	NA	NA	NA	NA	inter
CUST_28205_PI429285431	3.1680489	P	3.7628531	P	0.662134312788882	0	lncRNA	29834-1_{1..1641}	n325488|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322439|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322439|-0.6167190|-0.1619670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325488|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322439|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322439|-0.6167190|-0.1619670	chr2	  1603288	  1604928	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26160_PI429285431	0.9167168	A	1.1734585	A	0.836976081397361	0	lncRNA	27671-1_{1..562}	lnc-MAGEB1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAGEB1-2:1	chrX	 30739699	 30740260	+	lnc-MAGEB1-2	lnc-MAGEB1-2:1	ENSG00000241886.1	RP11-242C19.2	GK	NA	chrX:30729699-30749579	inner
CUST_18936_PI429285431	4.599718	P	4.7003	P	0.932656671060847	0	lncRNA	20628-1_{1..3000}	lnc-KLF14-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KLF14-2:1	chr7	130794496	130797495	-	lnc-KLF14-2	lnc-KLF14-2:1	ENSG00000231721	AC058791.2	MKLN1	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70chr7:130794855-130804935"	NA	inner
CUST_27130_PI429285431	0.92011404	A	0.9108639	A	1.00643230746488	0	lncRNA	28665-1_{1..449}	n324245|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324429|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324429|-1.3641800|-0.5132321	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324245|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324429|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324429|-1.3641800|-0.5132321	chr7	 10708827	 10709275	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26852_PI429285431	1.9616627	A	1.7279735	A	1.17583791207321	0	lncRNA	28365-1_{1..984}	n323923|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055621|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055621|-1.1619200|-0.3072213	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323923|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055621|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055621|-1.1619200|-0.3072213	chrX	  2537434	  2538417	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-61.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70"	NA	inter
CUST_49792_PI429285431	0.90425855	A	0.8991106	A	1.00357466094339	0	lncRNA	53549-1_{1..2809}	hg19_lincRNAsTranscripts_TCONS_l2_00025909 range=chr7:62812765-62838584 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025909 range=chr7:62812765-62838584 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 62812765	 62815573	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29845_PI429285431	5.2847247	P	5.7455463	P	0.726572365321875	0	lncRNA	31608-1_{1..297}	n333740|L06887|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191749|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191749|1.3504300|-0.0654645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333740|L06887|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191749|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191749|1.3504300|-0.0654645	chr7	142008582	142008878	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1442_PI429285431	9.044001	P	9.312704	P	0.830065449187144	0	lncRNA	1431-1_{1..2502}	"transcript_id ""ENST00000490139.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000490139.1"" | genecode_v17"	chr3	112861197	112863698	-	ENSG00000243795.1	ENST00000490139.1	RP11-572M11.3	RP11-572M11.3-001	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	inter
CUST_2936_PI429285431	0.97293895	A	1.311218	A	0.790984292054378	0	lncRNA	2917-1_{1..253}	"transcript_id ""ENST00000422042.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422042.1"" | genecode_v17"	chr7	134368896	134369148	+	ENSG00000224375.1	ENST00000422042.1	AC009276.4	AC009276.4-001	BPGM	NA	chr7:134358896-134364568	inter
CUST_40506_PI429285431	1.5491635	A	1.4493783	A	1.07161390019234	0	lncRNA	41271-1_{1..571}	n409479|NR_033865|lncRNA|Homosapiens||RefGeneNoncode|NR_033865||2.5987000|-0.0759650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409479|NR_033865|lncRNA|Homosapiens||RefGeneNoncode|NR_033865||2.5987000|-0.0759650	chr17	 15668016	 15668586	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37648_PI429285431	10.494165	P	10.022628	P	1.38658590466345	0	lncRNA	38740-1_{1..334}	n346125|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1675|NULL|-1.3048900|-0.5150892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346125|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1675|NULL|-1.3048900|-0.5150892	chr4	106058459	106058792	-	NA	NA	NA	NA	TET2	NA	chr4:106067032-106071747	inter
CUST_48781_PI429285431	3.249567	P	3.8010042	P	0.6823400485861	0	lncRNA	52619-1_{1..1294}	hg19_lincRNAsTranscripts_TCONS_l2_00015577 range=chr2:201605543-201619790 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015577 range=chr2:201605543-201619790 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	201605543	201606836	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3088_PI429285431	1.6426331	A	5.7849174	P	0.0566302103940751	0	lncRNA	3067-1_{1..663}	"transcript_id ""ENST00000521030.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521030.1"" | genecode_v17"	chr8	 40190692	 40191354	-	ENSG00000253802.1	ENST00000521030.1	CTA-392C11.1	CTA-392C11.1-001	NA	NA	NA	inter
CUST_33397_PI429285431	2.6750064	A	3.2040417	A	0.693017985787514	0	lncRNA	34975-1_{1..1263}	n340118|BC015656|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2577|NULL|-0.8499930|-0.1312273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340118|BC015656|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2577|NULL|-0.8499930|-0.1312273	chr10	100011779	100013041	+	NA	NA	NA	NA	LOXL4	"hg19_refFlat_LOXL4:range=chr10:100008678-1000227765'pad=0,hg19_refFlat_LOXL4:range=chr10:100008678-1000227765'pad=0 3'pad=0 strand=- repeatMasking=none,-102.90;hg19_refFlat_LOXL3:range=chr2:74760733-747797615'pad=0,hg19_refFlat_LOXL3:range=chr2:74760733-747797615'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10chr10:100007443-100026332"	NA	inner
CUST_16225_PI429285431	1.1391339	A	0.9148999	A	1.16815685013094	0	lncRNA	17932-1_{1..1822}	lnc-KCNMB1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNMB1-3:4	chr5	170173915	170175736	-	lnc-KCNMB1-3	lnc-KCNMB1-3:4	XLOC_005079	linc-KCNMB1-1	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30"	NA	inter
LNCA_21_P0006915	4.0161033	P	4.2654676	P	0.841267024166489	0	lncRNA	TCONS_00018339	NA	NA	NA	NA	XLOC_008619	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008619), lincRNA [TCONS_00018339]"	chr10:114704148-114704207	hs|10q25.2	Agilent_HUMAN_G3V2	TCONS_00018339	TCONS_00018339	chr10	114704148	114704207	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15169_PI429285431	1.199531	A	1.2926352	A	0.937503381952302	0	lncRNA	16832-1_{1..318}	lnc-C2orf65-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2orf65-2:1	chr2	 75059332	 75059649	-	lnc-C2orf65-2	lnc-C2orf65-2:1	XLOC_002169	linc-C2orf65-3	HK2	NA	chr2:75049332-75069445	inter
CUST_10091_PI429285431	6.2020397	P	6.199547	P	1.00172930149723	0	lncRNA	11617-1_{1..443}	lnc-NR2F2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR2F2-1:1	chr15	 96887794	 96888236	+	lnc-NR2F2-1	lnc-NR2F2-1:1	XLOC_011371	linc-SPATA8-2	NR2F2	NA	chr15:96877794-96883492	inter
CUST_41901_PI429285431	3.0927742	P	3.1692061	P	0.948400349770978	0	lncRNA	43620-1_{1..92}	ENST00000579892 ncrna:miRNA chromosome:GRCh37:2:62432961:62433052:1 gene:ENSG00000266097 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579892 ncrna:miRNA chromosome:GRCh37:2:62432961:62433052:1 gene:ENSG00000266097 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 62432961	 62433052	+	ENSG00000266097	ENST00000579892	NA	NA	B3GNT2	NA	chr2:62423262-62443052	inner
CUST_39199_PI429285431	1.4985538	A	0.92025495	A	1.49308763994252	0	lncRNA	40174-1_{1..1230}	n385960|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009wlc.2||0.2692240|-0.1819504	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n385960|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009wlc.2||0.2692240|-0.1819504	chr1	149576452	149577681	+	NA	NA	NA	NA	LOC100288037	NA	chr1:149671871-149672242	inter
CUST_20959_PI429285431	0.91093504	A	1.1071553	A	0.872834323077112	0	lncRNA	22590-1_{1..565}	lnc-ATP6V1C2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATP6V1C2-2:1	chr2	 10744815	 10745379	+	lnc-ATP6V1C2-2	lnc-ATP6V1C2-2:1	ENSG00000234818.1	AC092687.5	NOL10	NA	chr2:10734815-10754956	inner
CUST_10085_PI429285431	2.6589599	A	2.5819542	A	1.05482648461485	0	lncRNA	11612-1_{1..478}	lnc-C10orf137-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf137-1:4	chr10	127375117	127375594	+	lnc-C10orf137-1	lnc-C10orf137-1:4	XLOC_008661	linc-C10orf137-1	C10orf122	NA	chr10:127365117-127371713	inter
CUST_24502_PI429285431	0.9156598	A	0.91389775	A	1.00122210615336	0	lncRNA	26053-1_{1..1924}	lnc-KLHL8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL8-1:1	chr4	 88161410	 88163333	-	lnc-KLHL8-1	lnc-KLHL8-1:1	ENSG00000250163.1	RP11-476C8.3	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10"	NA	inter
CUST_32722_PI429285431	5.8743267	P	5.6353526	P	1.18015315643235	0	lncRNA	34363-2_{3001..3117}	n339351|BC036781|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1783|NULL|0.2002600|-0.0916397	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339351|BC036781|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1783|NULL|0.2002600|-0.0916397	chr16	 90089146	 90089262	-	NA	NA	NA	NA	DBNDD1	"hg19_refFlat_GAS8:range=chr16:90089130-901097535'pad=0,hg19_refFlat_GAS8:range=chr16:90089130-901097535'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.20chr16:90076146-90085937"	NA	inter
LNCA_21_P0002178	0.91392565	A	0.9017248	A	1.00849284609529	0	lncRNA	TCONS_00003588	NA	NA	NA	NA	XLOC_001372	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001372), lincRNA [TCONS_00003588]"	chr2:17442948-17443007	hs|2p24.2	Agilent_HUMAN_G3V2	TCONS_00003588	TCONS_00003588	chr2	 17442948	 17443007	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18293_PI429285431	6.0553546	P	6.4286714	P	0.772005590521315	0	lncRNA	20023-1_{1..397}	lnc-FAM75A7-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM75A7-4:2	chr9	 66533322	 66533718	-	lnc-FAM75A7-4	lnc-FAM75A7-4:2	ENSG00000234665	RP11-262H14.3	NA	NA	NA	inter
CUST_26932_PI429285431	0.9216535	A	0.9079802	A	1.00952266410805	0	lncRNA	28451-2_{3001..3738}	n324010|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053466|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053466|0.4142060|-0.3839511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324010|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053466|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053466|0.4142060|-0.3839511	chr9	104945625	104946362	-	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70"	NA	inter
CUST_1636_PI429285431	0.9046895	A	1.1245712	A	0.858635841098913	0	lncRNA	1621-1_{1..1005}	"transcript_id ""ENST00000598992.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598992.1"" | genecode_v17"	chr3	195414692	195415696	+	ENSG00000242086.3	ENST00000598992.1	AC069513.3	AC069513.3-037	NA	NA	NA	inter
CUST_25079_PI429285431	1.9473335	A	1.8831123	A	1.04552039144855	0	lncRNA	26616-1_{1..3000}	lnc-CHAC2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHAC2-4:1	chr2	 52634116	 52637115	+	lnc-CHAC2-4	lnc-CHAC2-4:1	ENSG00000231918.1	AC007682.1	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.00"	NA	inter
CUST_38284_PI429285431	0.9089104	A	1.137936	A	0.853210958118028	0	lncRNA	39338-2_{3001..3945}	n381906|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tcf.2||3.7443400|-0.3737606	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381906|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tcf.2||3.7443400|-0.3737606	chr12	 92820734	 92821678	+	NA	NA	NA	NA	CLLU1	NA	chr12:92815307-92824778	inter
CUST_12572_PI429285431	0.91953886	A	0.90694624	A	1.00876674382221	0	lncRNA	14180-1_{1..911}	lnc-DLGAP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLGAP2-3:1	chr8	  1305235	  1306145	+	lnc-DLGAP2-3	lnc-DLGAP2-3:1	XLOC_006685	linc-DLGAP2-3	NA	NA	NA	inter
LNCA_21_P0003161	3.8435762	P	3.7611473	P	1.05879911935495	0	lncRNA	TCONS_00006619	NA	NA	NA	NA	XLOC_003225	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003225), lincRNA [TCONS_00006619]"	chr3:120084553-120084494	hs|3q13.33	Agilent_HUMAN_G3V2	TCONS_00006619	TCONS_00006619	chr3	120084494	120084553	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1649_PI429285431	4.3791375	P	4.448369	P	0.953145587870489	0	lncRNA	1634-1_{1..659}	"transcript_id ""ENST00000595382.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595382.1"" | genecode_v17"	chr3	195435025	195435683	+	ENSG00000242086.3	ENST00000595382.1	AC069513.3	AC069513.3-014	MUC20	NA	chr3:195447753-195448640	inter
CUST_14018_PI429285431	0.9021875	A	0.89420325	A	1.00554960268506	0	lncRNA	15666-1_{1..560}	lnc-KLHL25-8:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL25-8:4	chr15	 86659812	 86660371	-	lnc-KLHL25-8	lnc-KLHL25-8:4	XLOC_011565	linc-KLHL25-3	NA	NA	NA	inter
CUST_453_PI429285431	5.577984	P	5.218317	P	1.28312969393568	0	lncRNA	445-1_{1..549}	"transcript_id ""ENST00000601909.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601909.1"" | genecode_v17"	chr1	151770530	151771078	+	ENSG00000269489.1	ENST00000601909.1	RP11-98D18.17	RP11-98D18.17-001	RORC	NA	chr1:151778547-151781078	inter
CUST_26666_PI429285431	0.9006872	A	1.4487638	A	0.683931337602195	0	lncRNA	28166-1_{1..1005}	lnc-AC016251.1-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC016251.1-1:12	chr15	 96766031	 96767035	-	lnc-AC016251.1-1	lnc-AC016251.1-1:12	ENSG00000247809.3	RP11-327J17.3	NA	NA	NA	inter
LNCA_21_P0007844	0.9121321	A	1.195249	A	0.821813593940928	0	lncRNA	XR_110328	XR_110328	XR_110328	NA	Hs.339918	LOC100507616	uncharacterized LOC100507616	NA	THC2602111	NA	"PREDICTED: Homo sapiens hypothetical LOC100507616 (LOC100507616), miscRNA [XR_110328]"	chr12:92860680-92860739	hs|12q22	Agilent_HUMAN_G3V2	XR_110328	XR_110328	chr12	 92860680	 92860739	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43862_PI429285431	8.504812	P	8.5585575	P	0.963431834145625	0	lncRNA	48583-1_{1..2396}	"gi|299829289|ref|NR_033872.1| Homo sapiens PCBP1 antisense RNA 1 (PCBP1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299829289|ref|NR_033872.1| Homo sapiens PCBP1 antisense RNA 1 (PCBP1-AS1), non-coding RNA"	Chr2	 70189395	 70191790	-	400960	NR_033872.1	NA	NA	NA	NA	NA	inter
CUST_14334_PI429285431	7.014746	P	7.4479895	P	0.740594889864078	0	lncRNA	15990-1_{1..206}	lnc-SGPP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SGPP1-1:1	chr14	 64214028	 64214233	-	lnc-SGPP1-1	lnc-SGPP1-1:1	XLOC_011050	linc-SGPP1	NA	NA	NA	inter
CUST_8993_PI429285431	3.7567358	P	3.960998	P	0.867982463362789	0	lncRNA	10524-1_{1..334}	lnc-ADD1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ADD1-1:7	chr4	  2942029	  2942362	+	lnc-ADD1-1	lnc-ADD1-1:7	ENSG00000249673	RP11-520M5.5	NOP14	NA	chr4:2939663-2952168	inner
CUST_38231_PI429285431	0.9186032	A	0.90465736	A	1.00971339138489	0	lncRNA	39293-1_{1..1285}	n381689|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001nhe.2||2.2444000|-0.2475329	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381689|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001nhe.2||2.2444000|-0.2475329	chr11	 50368317	 50369601	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
LNCA_21_P0007390	0.915289	A	1.0059028	A	0.939123110766945	0	lncRNA	TCONS_00019741	NA	NA	NA	NA	XLOC_009535	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009535), lincRNA [TCONS_00019741]"	chr11:103571268-103570126	hs|11q22.3	Agilent_HUMAN_G3V2	TCONS_00019741	TCONS_00019741	chr11	103570126	103571268	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9267_PI429285431	0.92375624	A	0.9272264	A	0.997597558872014	0	lncRNA	10772-2_{3001..3581}	lnc-LPIN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LPIN3-1:1	chr20	 40033759	 40034339	+	lnc-LPIN3-1	lnc-LPIN3-1:1	ENSG00000246885	ENST00000500201	CHD6	"hg19_refFlat_CHD6:range=chr20:40033233-401799765'pad=0,hg19_refFlat_CHD6:range=chr20:40033233-401799765'pad=0 3'pad=0 strand=- repeatMasking=none,-104.40chr20:40031170-40044133"	NA	inner
CUST_14810_PI429285431	6.1188283	P	6.0797877	P	1.02743035268648	0	lncRNA	16472-1_{1..857}	lnc-CALM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CALM1-1:1	chr14	 90924940	 90925796	+	lnc-CALM1-1	lnc-CALM1-1:1	XLOC_010902	linc-C14orf159-3	NA	NA	NA	inter
CUST_25107_PI429285431	4.8614902	P	5.0898776	P	0.853588473583416	0	lncRNA	26644-1_{1..465}	lnc-AC109486.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC109486.1-2:1	chr5	 59326675	 59327139	+	lnc-AC109486.1-2	lnc-AC109486.1-2:1	ENSG00000248935.1	CTD-2254N19.1	PDE4D	NA	chr5:59316675-59336799	inner
LNCA_21_P0013593	0.917285	A	0.9051676	A	1.00843451339734	0	lncRNA	TCONS_l2_00028844	NA	NA	NA	NA	XLOC_l2_014853	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014853), lincRNA [TCONS_l2_00028844]"	chr9:76069853-76069912	hs|9q21.13	Agilent_HUMAN_G3V2	TCONS_l2_00028844	TCONS_l2_00028844	chr9	 76069853	 76069912	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32748_PI429285431	3.3464887	A	3.5165029	P	0.888833932606688	0	lncRNA	34385-1_{1..2997}	n339376|BC044922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1808|NULL|-0.2716930|-0.3147028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n339376|BC044922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1808|NULL|-0.2716930|-0.3147028	chr3	 57678931	 57681927	+	NA	NA	NA	NA	FAM116A	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30chr3:57668931-57678816"	NA	inter
CUST_27376_PI429285431	5.800786	P	5.8412423	P	0.97234736177529	0	lncRNA	28938-1_{1..717}	n324537|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000076308|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000076308|-1.0715900|-0.3013345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324537|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000076308|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000076308|-1.0715900|-0.3013345	chr6	 33220537	 33221253	+	NA	NA	NA	NA	VPS52	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-36.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30chr6:33218049-33233522"	NA	inner
CUST_23271_PI429285431	1.7380558	A	2.5893898	A	0.554271986796934	0	lncRNA	24842-1_{1..816}	lnc-LBX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LBX1-2:1	chr10	102899108	102899923	-	lnc-LBX1-2	lnc-LBX1-2:1	ENSG00000226740.1	RP11-31L23.3	TLX1	"hg19_refFlat_TLX1:range=chr10:102891299-1028966705'pad=0,hg19_refFlat_TLX1:range=chr10:102891299-1028966705'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.10chr10:102891061-102897546"	NA	inter
LNCA_21_P0013756	11.258249	P	11.205365	P	1.03733652609329	0	lncRNA	TCONS_l2_00030169	NA	NA	NA	NA	XLOC_l2_015476	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015476), lincRNA [TCONS_l2_00030169]"	chrX:27882376-27882435	hs|Xp21.3	Agilent_HUMAN_G3V2	TCONS_l2_00030169	TCONS_l2_00030169	chrX	 27882376	 27882435	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35818_PI429285431	0.90273905	A	0.89485806	A	1.00547763367344	0	lncRNA	37224-1_{1..3000}	n344494|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_42|NULL|-1.4125300|-0.3231756	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344494|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_42|NULL|-1.4125300|-0.3231756	chr6	132455117	132458116	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20"	NA	inter
CUST_12632_PI429285431	0.9024296	A	0.89806885	A	1.00302721435479	0	lncRNA	14248-1_{1..278}	lnc-MYEF2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYEF2-5:1	chr15	 48083304	 48083581	-	lnc-MYEF2-5	lnc-MYEF2-5:1	XLOC_011469	linc-SLC30A4-2	NA	NA	NA	inter
CUST_43364_PI429285431	2.5898972	A	3.0267508	A	0.738743993325271	0	lncRNA	48181-1_{1..3000}	"gi|379643022|ref|NR_046424.1| Homo sapiens chromosome 1 open reading frame 86 (C1orf86), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379643022|ref|NR_046424.1| Homo sapiens chromosome 1 open reading frame 86 (C1orf86), transcript variant 6, non-coding RNA"	Chr1	  2120987	  2123986	-	199990	NR_046424.1	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30"	NA	inter
CUST_10902_PI429285431	5.0525436	P	5.338476	P	0.820211342733677	0	lncRNA	12446-1_{1..914}	lnc-RP13-512J5.1.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP13-512J5.1.1-1:3	chr2	  3584314	  3585227	-	lnc-RP13-512J5.1.1-1	lnc-RP13-512J5.1.1-1:3	XLOC_001952	linc-ADI1	RNASEH1	NA	chr2:3592678-3594459	inter
CUST_8578_PI429285431	5.519271	P	5.833628	P	0.804209341866378	0	lncRNA	10135-1_{1..971}	lnc-CIT-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-CIT-1:2	chr12	120031987	120032957	-	lnc-CIT-1	lnc-CIT-1:2	ENSG00000248636	ENST00000509470	TMEM233	NA	chr12:120031264-120042306	inner
CUST_5860_PI429285431	5.660151	P	5.9216027	P	0.834248041719762	0	lncRNA	5789-1_{1..541}	"transcript_id ""ENST00000588654.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588654.1"" | genecode_v17"	chr17	 41458656	 41459196	-	ENSG00000188825.8	ENST00000588654.1	CTD-3014M21.4	CTD-3014M21.4-007	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00"	NA	inter
LNCA_21_P0010467	4.971096	P	5.3851924	P	0.750489399839192	0	lncRNA	TCONS_00029835	NA	NA	NA	NA	XLOC_014267	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014267), lincRNA [TCONS_00029835]"	chr22:46043184-46043243	hs|22q13.31	Agilent_HUMAN_G3V2	TCONS_00029835	TCONS_00029835	chr22	 46043184	 46043243	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28581_PI429285431	9.296022	P	8.900932	P	1.3150247931618	0	lncRNA	30261-1_{1..381}	n325942|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048933|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048933|-1.3735900|-0.3384372	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325942|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048933|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048933|-1.3735900|-0.3384372	chr10	 79782359	 79782739	+	NA	NA	NA	NA	POLR3A	NA	chr10:79772359-79789298	inner
CUST_38092_PI429285431	0.9759988	A	0.9198384	A	1.03969502288206	0	lncRNA	39168-1_{1..569}	n381102|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001bsm.2||-1.1979400|-0.3553453	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381102|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001bsm.2||-1.1979400|-0.3553453	chr1	 31460911	 31461479	+	NA	NA	NA	NA	PUM1	NA	chr1:31450911-31471480	inner
CUST_51283_PI429285431	4.1528044	P	3.109563	A	2.06085271207519	0	lncRNA	54889-1_{1..1138}	hg19_lincRNAsTranscripts_TCONS_l2_00008532 range=chr15:31109452-31117402 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008532 range=chr15:31109452-31117402 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 31109452	 31110589	+	NA	NA	NA	NA	FAN1	NA	chr15:31117044-31127402	inter
CUST_14626_PI429285431	1.4770262	A	1.6481063	A	0.888177481892271	0	lncRNA	16297-1_{1..971}	lnc-RP11-785H20.1.1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-785H20.1.1-1:6	chr8	123005837	123006807	+	lnc-RP11-785H20.1.1-1	lnc-RP11-785H20.1.1-1:6	XLOC_006911	linc-ZHX2-1	NA	NA	NA	inter
CUST_35688_PI429285431	4.9638486	P	5.4443884	P	0.716709409232933	0	lncRNA	37108-1_{1..3000}	n342849|BX537506|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5352|NULL|-0.7563660|-0.2311478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342849|BX537506|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5352|NULL|-0.7563660|-0.2311478	chr8	134467095	134470094	-	NA	NA	NA	NA	ST3GAL1	NA	chr8:134467091-134481107	inner
CUST_25460_PI429285431	9.347798	P	10.392452	P	0.484761154273678	0	lncRNA	26990-1_{1..2270}	lnc-SEZ6L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SEZ6L2-1:1	chr16	 29930957	 29933226	-	lnc-SEZ6L2-1	lnc-SEZ6L2-1:1	ENSG00000260114.1	CTD-2574D22.4	KCTD13	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr16:29920957-29937545"	NA	inner
CUST_50126_PI429285431	10.653055	P	10.746798	P	0.937088363825221	0	lncRNA	53854-1_{1..813}	hg19_lincRNAsTranscripts_TCONS_l2_00029481 range=chr9:98172789-98189080 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029481 range=chr9:98172789-98189080 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 98172789	 98173601	-	NA	NA	NA	NA	PTCH1	NA	chr9:98175399-98199080	inter
CUST_12794_PI429285431	0.90854615	A	0.8986552	A	1.0068794394792	0	lncRNA	14421-1_{1..699}	lnc-FAM72B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM72B-4:1	chr1	120637415	120638113	+	lnc-FAM72B-4	lnc-FAM72B-4:1	XLOC_000373	linc-FAM72B-1	NA	NA	NA	inter
CUST_652_PI429285431	0.9242471	A	0.90233374	A	1.01530512562864	0	lncRNA	644-1_{1..1641}	"transcript_id ""ENST00000366424.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000366424.2"" | genecode_v17"	chr2	  1624282	  1625922	-	ENSG00000203635.2	ENST00000366424.2	AC144450.2	AC144450.2-001	PXDN	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-23.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr2:1635659-1639191"	NA	inter
LNCA_21_P0013464	0.94793826	A	0.91995263	A	1.01958752732057	0	lncRNA	TCONS_l2_00027544	NA	NA	NA	NA	XLOC_l2_014086	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014086), lincRNA [TCONS_l2_00027544]"	chr8:860500-860559	hs|8p23.3	Agilent_HUMAN_G3V2	TCONS_l2_00027544	TCONS_l2_00027544	chr8	   860500	   860559	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20723_PI429285431	1.0453146	A	1.1463876	A	0.932339309112731	0	lncRNA	22358-1_{1..791}	lnc-RP13-512J5.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RP13-512J5.1.1-1:1	chr2	  3584314	  3585104	-	lnc-RP13-512J5.1.1-1	lnc-RP13-512J5.1.1-1:1	ENSG00000242282.2	AC108488.4	RNASEH1	NA	chr2:3592678-3594463	inter
CUST_36280_PI429285431	2.204451	A	2.5019603	A	0.813655897674021	0	lncRNA	37516-1_{1..3000}	n344810|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_359|NULL|-1.3390700|-0.2842366	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344810|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_359|NULL|-1.3390700|-0.2842366	chr3	195399498	195402497	+	NA	NA	NA	NA	MUC20	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60chr3:195447753-195452174"	NA	inter
CUST_14066_PI429285431	0.9140999	A	1.2291349	A	0.803831489433031	0	lncRNA	15712-1_{1..215}	lnc-C9orf170-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf170-4:1	chr9	 89205000	 89205214	+	lnc-C9orf170-4	lnc-C9orf170-4:1	XLOC_007435	linc-C9orf170-4	NA	NA	NA	inter
CUST_31585_PI429285431	7.5648155	P	7.1727333	P	1.31228602218663	0	lncRNA	33342-1_{1..1859}	n338090|AK095920|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|477|NULL|-0.8470390|-0.2777966	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338090|AK095920|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|477|NULL|-0.8470390|-0.2777966	chr1	 94060501	 94062359	-	NA	NA	NA	NA	BCAR3	NA	chr1:94050501-94072345	inner
CUST_46390_PI429285431	9.800232	P	9.707031	P	1.06673439067017	0	lncRNA	50607-1_{1..1547}	"gi|381140033|ref|NR_046471.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 14, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|381140033|ref|NR_046471.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 14, non-coding RNA"	Chr14	101292445	101293991	+	55384	NR_046471.1	NA	NA	NA	NA	NA	inter
CUST_12721_PI429285431	0.9551255	A	1.4918917	A	0.68931427619923	0	lncRNA	14341-1_{1..983}	lnc-XPO7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-XPO7-1:1	chr8	 21540155	 21541137	+	lnc-XPO7-1	lnc-XPO7-1:1	XLOC_006737	linc-XPO7-1	GFRA2	NA	chr8:21549530-21551011	inter
CUST_6475_PI429285431	1.0832086	A	1.479193	A	0.759970645791892	0	lncRNA	6416-1_{1..625}	"transcript_id ""ENST00000604333.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604333.1"" | genecode_v17"	chr19	 35414203	 35414827	-	ENSG00000270876.1	ENST00000604333.1	CTC-523E23.8	CTC-523E23.8-001	ZNF30	NA	chr19:35417807-35427716	inter
CUST_335_PI429201921	11.825024	P	11.40142	P	1.34127401303103	0	lncRNA	221-2_{3001..6000}	TC01005080.hg.1	 TCONS_l2_00000880-XLOC_l2_000656 // Broad TUCP // linc-WNT3A chr1:+:228159872-228161284 // chr1 // 100 // 100 // 0 // --- // 0///TCONS_l2_00000879-XLOC_l2_000656 // Broad TUCP // linc-WNT3A chr1:+:228154669-228162651 // chr1 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:228154669-228162651	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00000879-XLOC_l2_000656	linc-WNT3A	chr1	228154669	228162651	+	NA	NA	NA	NA	RNF11	NA	chr1:51701945-51710768	Unknown
LNCA_21_P0009177	4.0094404	P	4.7800617	P	0.586164986927464	0	lncRNA	ENST00000442627	NA	NA	NA	NA	XLOC_012298	NA	ENST00000442627	NA	NA	"BROAD Institute lincRNA (XLOC_012298), lincRNA [TCONS_00025195]"	chr17:69593357-69593416	hs|17q24.3	Agilent_HUMAN_G3V2	ENST00000442627	ENST00000442627	chr17	 69593357	 69593416	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11152_PI429285431	2.0275264	A	1.5476944	A	1.3945812596831	0	lncRNA	12710-1_{1..1773}	lnc-TRAM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRAM1-1:1	chr8	 71447449	 71449221	-	lnc-TRAM1-1	lnc-TRAM1-1:1	XLOC_007119	linc-NCOA2	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90"	NA	inter
CUST_11340_PI429285431	4.627195	P	4.5958467	P	1.02196677938631	0	lncRNA	12903-1_{1..878}	lnc-SEMA5A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEMA5A-1:1	chr5	  8839666	  8840543	-	lnc-SEMA5A-1	lnc-SEMA5A-1:1	XLOC_004729	linc-FASTKD3-1	NA	NA	NA	inter
CUST_30082_PI429285431	4.9156265	P	4.9315844	P	0.988999776453158	0	lncRNA	31854-1_{1..1041}	n334606|U80745|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221584|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221584|3.2247300|-0.0868279	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334606|U80745|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221584|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221584|3.2247300|-0.0868279	chr22	 20918838	 20919878	+	NA	NA	NA	NA	MED15	NA	chr22:20908838-20941919	inner
CUST_10349_PI429285431	0.92472214	A	0.92569256	A	0.999327582287226	0	lncRNA	11878-1_{1..3000}	lnc-AC092327.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-AC092327.1-1:1	chr16	 86383157	 86386156	-	lnc-AC092327.1-1	lnc-AC092327.1-1:1	XLOC_012045	linc-COX4NB-6	NA	NA	NA	inter
CUST_1553_PI429285431	5.1652265	P	5.3634386	P	0.871630086097589	0	lncRNA	1540-1_{1..664}	"transcript_id ""ENST00000468232.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000468232.1"" | genecode_v17"	chr3	170128300	170128963	+	ENSG00000242578.1	ENST00000468232.1	RP11-469J4.3	RP11-469J4.3-001	CLDN11	NA	chr3:170136653-170146403	inter
CUST_18688_PI429285431	0.92379415	A	1.5636469	A	0.641778449148066	0	lncRNA	20387-1_{1..1116}	lnc-SPRYD7-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPRYD7-1:6	chr13	 50655959	 50657074	-	lnc-SPRYD7-1	lnc-SPRYD7-1:6	ENSG00000231607	DLEU2	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.11"	NA	inter
CUST_33702_PI429285431	0.9128388	A	1.1387237	A	0.855070393747477	0	lncRNA	35263-1_{1..1272}	n340480|BC032909|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2941|NULL|-0.5866390|-0.2709432	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n340480|BC032909|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2941|NULL|-0.5866390|-0.2709432	chr5	 60920227	 60921498	-	NA	NA	NA	NA	C5orf64	NA	chr5:60933636-60937234	inter
CUST_29141_PI429285431	8.079523	P	8.079129	P	1.00027313728434	0	lncRNA	30884-1_{1..2257}	n326651|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000011211|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000011211|-0.9761730|-0.1937720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326651|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000011211|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000011211|-0.9761730|-0.1937720	chr1	 32080206	 32082462	-	NA	NA	NA	NA	PEF1	NA	chr1:32095463-32103756	inner
CUST_20964_PI429285431	3.111388	A	3.6975098	P	0.666131171830239	0	lncRNA	22595-1_{1..383}	lnc-CCDC7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC7-2:1	chr10	 32635763	 32636145	+	lnc-CCDC7-2	lnc-CCDC7-2:1	ENSG00000233825.1	RP11-135A24.4	EPC1	"hg19_refFlat_EPC1:range=chr10:32557991-326358435'pad=0,hg19_refFlat_EPC1:range=chr10:32557991-326358435'pad=0 3'pad=0 strand=- repeatMasking=none,-97.80chr10:32625763-32636113"	NA	inner
CUST_32903_PI429285431	0.9087165	A	1.1204867	A	0.863477086760554	0	lncRNA	34528-1_{1..1629}	n339572|BC043288|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2016|NULL|-1.2314800|-0.3176356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n339572|BC043288|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2016|NULL|-1.2314800|-0.3176356	chr20	  7328118	  7329746	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13172_PI429285431	0.89685726	A	0.91084313	A	0.990352571566635	0	lncRNA	14799-3_{6001..7160}	lnc-ITPR3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITPR3-1:1	chr6	 33888234	 33889393	+	lnc-ITPR3-1	lnc-ITPR3-1:1	XLOC_005263	linc-HMGA1-2	NA	NA	NA	inter
CUST_41980_PI429285431	0.9070583	A	0.9016433	A	1.00376044477963	0	lncRNA	43800-1_{1..85}	ENST00000384892 ncrna:miRNA chromosome:GRCh37:1:220291499:220291583:-1 gene:ENSG00000207624 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384892 ncrna:miRNA chromosome:GRCh37:1:220291499:220291583:-1 gene:ENSG00000207624 gene_biotype:miRNA transcript_biotype:miRNA	chr1	220291499	220291583	-	ENSG00000207624	ENST00000384892	NA	NA	IARS2	NA	chr1:220281499-220301583	inter
CUST_9319_PI429285431	0.9130631	A	0.9244237	A	0.992156355327869	0	lncRNA	10827-1_{1..820}	lnc-MAP3K9-3:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP3K9-3:13	chr14	 71761979	 71762798	-	lnc-MAP3K9-3	lnc-MAP3K9-3:13	XLOC_011064	linc-MAP3K9-1	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60"	NA	inter
LNCA_21_P0010857	6.4135795	P	4.6790676	P	3.32766891432821	0	lncRNA	TCONS_l2_00003387	NA	NA	NA	NA	XLOC_l2_001853	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001853), lincRNA [TCONS_l2_00003387]"	chr10:6335196-6335137	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_l2_00003387	TCONS_l2_00003387	chr10	  6335137	  6335196	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2858_PI429285431	5.507457	P	5.478237	P	1.02046025979764	0	lncRNA	2840-1_{1..534}	"transcript_id ""ENST00000438894.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438894.1"" | genecode_v17"	chr7	 65847406	 65847939	-	ENSG00000179406.6	ENST00000438894.1	LINC00174	LINC00174-003	NA	NA	NA	inter
CUST_28954_PI429285431	0.9027333	A	1.197153	A	0.815400247588647	0	lncRNA	30674-2_{3001..3540}	n326383|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098435|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098435|-1.1549100|-0.3112374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326383|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098435|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098435|-1.1549100|-0.3112374	chr1	147641915	147642454	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29828_PI429285431	6.347737	P	6.380762	P	0.977368829752843	0	lncRNA	31591-1_{1..260}	n333665|D63161|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000101676|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000101676|1.4953200|-0.0338667	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333665|D63161|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000101676|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000101676|1.4953200|-0.0338667	chr20	 48808286	 48808545	+	NA	NA	NA	NA	CEBPB	NA	chr20:48807376-48809212	inner
CUST_38825_PI429285431	0.92657113	A	0.9175756	A	1.00625470574568	0	lncRNA	39819-1_{1..1535}	n384615|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jgt.1||-0.9789310|-0.4406827	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n384615|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jgt.1||-0.9789310|-0.4406827	chr5	 27472390	 27473924	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35860_PI429285431	1.3315533	A	1.6315897	A	0.812231903034079	0	lncRNA	37255-1_{1..456}	n344527|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_75|NULL|-1.2898900|-0.3376392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344527|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_75|NULL|-1.2898900|-0.3376392	chr13	 30221777	 30222232	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27705_PI429285431	3.9647517	P	4.251836	P	0.819556717648377	0	lncRNA	29284-1_{1..551}	n324916|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000276286|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000276286|-0.1097000|-0.2801779	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324916|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000276286|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000276286|-0.1097000|-0.2801779	chr20	 61197594	 61198144	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15868_PI429285431	5.9628196	P	6.209341	P	0.842926415737564	0	lncRNA	17559-1_{1..724}	lnc-ENPP1-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENPP1-4:5	chr6	132490141	132490864	+	lnc-ENPP1-4	lnc-ENPP1-4:5	XLOC_005465	linc-TAAR9-1	NA	NA	NA	inter
CUST_38343_PI429285431	9.00822	P	8.809958	P	1.14731536301114	0	lncRNA	39389-1_{1..1102}	n382075|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vim.2||-1.0809900|-0.3239045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382075|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vim.2||-1.0809900|-0.3239045	chr13	 66982201	 66983302	-	NA	NA	NA	NA	PCDH9	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30chr13:66972201-66993303"	NA	inner
CUST_51449_PI429285431	5.2765074	P	6.2062798	P	0.524941150151863	0	lncRNA	55026-1_{1..287}	hg19_lincRNAsTranscripts_TCONS_l2_00009677 range=chr16:32005808-32013474 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009677 range=chr16:32005808-32013474 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 32005808	 32006094	+	NA	NA	NA	NA	LOC100289290	NA	chr16:31995808-32023474	inter
CUST_32324_PI429285431	2.03449	A	2.0233908	A	1.00772304926705	0	lncRNA	34006-1_{1..1960}	n338902|BC066991|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1328|NULL|-1.0619500|-0.2832379	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338902|BC066991|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1328|NULL|-1.0619500|-0.2832379	chr2	 86831129	 86833088	+	NA	NA	NA	NA	RNF103-VPS24	"hg19_refFlat_RNF103:range=chr2:86830966-868509855'pad=0,hg19_refFlat_RNF103:range=chr2:86830966-868509855'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RNF103:range=chr2:86830966-868500095'pad=0,hg19_refFlat_RNF103:range=chr2:86830966-868500095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80chr2:86821129-86855889"	NA	inner
CUST_5298_PI429285431	0.89866024	A	0.8934932	A	1.00358794051148	0	lncRNA	5238-1_{1..2718}	"transcript_id ""ENST00000546186.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546186.2"" | genecode_v17"	chr15	 89929827	 89932544	+	ENSG00000255571.2	ENST00000546186.2	CTD-2335A18.1	CTD-2335A18.1-002	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70"	NA	inter
CUST_41449_PI429285431	4.5817204	P	3.8860393	P	1.61964889299276	0	lncRNA	42628-1_{1..87}	ENST00000577502 ncrna:miRNA chromosome:GRCh37:3:48681627:48681713:-1 gene:ENSG00000263898 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577502 ncrna:miRNA chromosome:GRCh37:3:48681627:48681713:-1 gene:ENSG00000263898 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 48681627	 48681713	-	ENSG00000263898	ENST00000577502	NA	NA	CELSR3	NA	chr3:48673896-48691713	inner
LNCA_21_P0007289	1.9652772	A	1.8205913	A	1.10548994257866	0	lncRNA	TCONS_00019508	NA	NA	NA	NA	XLOC_009306	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009306), lincRNA [TCONS_00019508]"	chr11:121770612-121770671	hs|11q24.1	Agilent_HUMAN_G3V2	TCONS_00019508	TCONS_00019508	chr11	121770612	121770671	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44848_PI429285431	1.1383162	A	0.9212428	A	1.16237324408085	0	lncRNA	49374-3_{6001..8335}	"gi|359465521|ref|NR_045597.1| Homo sapiens phosphodiesterase 10A (PDE10A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|359465521|ref|NR_045597.1| Homo sapiens phosphodiesterase 10A (PDE10A), transcript variant 2, non-coding RNA"	Chr6	165746776	165749110	-	10846	NR_045597.1	NA	NA	NA	NA	NA	inter
CUST_41778_PI429285431	10.023011	P	9.97189	P	1.03606965591617	0	lncRNA	43349-1_{1..65}	ENST00000583589 ncrna:miRNA chromosome:GRCh37:4:77494721:77494785:1 gene:ENSG00000263445 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583589 ncrna:miRNA chromosome:GRCh37:4:77494721:77494785:1 gene:ENSG00000263445 gene_biotype:miRNA transcript_biotype:miRNA	chr4	 77494721	 77494785	+	ENSG00000263445	ENST00000583589	NA	NA	SHROOM3	NA	chr4:77484721-77504785	inner
CUST_12422_PI429285431	2.1948652	A	0.9042359	A	2.44634741336336	0	lncRNA	14035-1_{1..472}	lnc-TGFBR2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGFBR2-3:2	chr3	 30433346	 30433817	+	lnc-TGFBR2-3	lnc-TGFBR2-3:2	XLOC_002606	linc-TGFBR2-2	NA	NA	NA	inter
CUST_16136_PI429285431	1.0100546	A	0.926781	A	1.05941922926635	0	lncRNA	17842-1_{1..329}	lnc-NOS1AP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOS1AP-1:1	chr1	162009133	162009461	+	lnc-NOS1AP-1	lnc-NOS1AP-1:1	XLOC_000443	linc-NOS1AP	NA	NA	NA	inter
CUST_39322_PI429285431	5.989442	P	6.006768	P	0.98806235779346	0	lncRNA	40288-1_{1..1293}	n386371|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010itb.1||2.9503500|-0.1738972	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386371|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010itb.1||2.9503500|-0.1738972	chr5	   470932	   472224	-	NA	NA	NA	NA	SLC9A3	NA	chr5:473334-483080	inter
CUST_4850_PI429285431	1.638488	A	1.2720133	A	1.28919875475253	0	lncRNA	4793-1_{1..338}	"transcript_id ""ENST00000554773.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554773.1"" | genecode_v17"	chr14	 60789954	 60790291	+	ENSG00000258556.1	ENST00000554773.1	CTD-2568P8.1	CTD-2568P8.1-001	NA	NA	NA	inter
CUST_5618_PI429285431	1.2079076	A	0.9031953	A	1.23517229642807	0	lncRNA	5546-1_{1..576}	"transcript_id ""ENST00000569807.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569807.1"" | genecode_v17"	chr16	 75872528	 75873103	-	ENSG00000261313.1	ENST00000569807.1	RP11-2C15.1	RP11-2C15.1-001	NA	NA	NA	inter
CUST_11534_PI429285431	5.6577115	P	5.721839	P	0.956523620370913	0	lncRNA	13106-1_{1..628}	lnc-PRSS3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRSS3-1:3	chr9	 33733126	 33733753	+	lnc-PRSS3-1	lnc-PRSS3-1:3	XLOC_007326	linc-PRSS3-1	NA	NA	NA	inter
CUST_25046_PI429285431	0.9138374	A	0.9186402	A	0.996676487855154	0	lncRNA	26585-1_{1..591}	lnc-ASTE1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASTE1-1:1	chr3	130791074	130791664	-	lnc-ASTE1-1	lnc-ASTE1-1:1	ENSG00000250129.1	RP11-265F19.1	NEK11	NA	chr3:130781074-130801183	inner
CUST_5308_PI429285431	1.0823932	A	0.9261982	A	1.11434425953411	0	lncRNA	5248-1_{1..1736}	"transcript_id ""ENST00000562894.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562894.1"" | genecode_v17"	chr15	 93322987	 93324722	-	ENSG00000260361.1	ENST00000562894.1	CTD-2313J17.5	CTD-2313J17.5-001	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50"	NA	inter
CUST_47268_PI429285431	8.484276	P	7.298414	P	2.27499283246514	0	lncRNA	51338-1_{1..2954}	"gi|342837693|ref|NR_040722.1| Homo sapiens RNA binding motif protein 39 (RBM39), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|342837693|ref|NR_040722.1| Homo sapiens RNA binding motif protein 39 (RBM39), transcript variant 5, non-coding RNA"	Chr20	 34291531	 34294484	-	9584	NR_040722.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0007242	0.9206973	A	1.4585074	A	0.688815685103031	0	lncRNA	TCONS_00019402	NA	NA	NA	NA	XLOC_009224	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009224), lincRNA [TCONS_00019402]"	chr11:77851087-77852469	hs|11q14.1	Agilent_HUMAN_G3V2	TCONS_00019402	TCONS_00019402	chr11	 77851087	 77852469	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11809_PI429285431	0.8968739	A	0.8952428	A	1.00113123172669	0	lncRNA	13390-1_{1..1019}	lnc-TDO2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TDO2-1:1	chr4	156894618	156895636	+	lnc-TDO2-1	lnc-TDO2-1:1	XLOC_003752	linc-GLRB-6	NA	NA	NA	inter
CUST_7672_PI429285431	2.6822777	A	3.0779257	A	0.760147872389581	0	lncRNA	9305-1_{1..569}	lnc-HAND1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HAND1-2:2	chr5	153825298	153825866	-	lnc-HAND1-2	lnc-HAND1-2:2	ENSG00000245275	CTB-157D17.1	SAP30L	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50chr5:153825517-153835382"	NA	inter
LNCA_21_P0002647	1.6108811	A	0.90849286	A	1.6271962279958	0	lncRNA	THC2564285	NA	NA	NA	NA	XLOC_001974	NA	NA	THC2564285	NA	"BROAD Institute lincRNA (XLOC_001974), lincRNA [TCONS_00005086]"	chr2:008500157-008500098	hs|2p25.1	Agilent_HUMAN_G3V2	THC2564285	THC2564285	chr2	  8500098	  8500157	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_59_PI429285431	0.89044577	A	0.8901756	A	1.00018728510944	0	lncRNA	58-1_{1..1049}	"transcript_id ""ENST00000572964.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000572964.1"" | genecode_v17"	chr16	 29793246	 29794294	+	ENSG00000262756.1	ENST00000572964.1	AC009133.21	AC009133.21-001	KIF22	"hg19_refFlat_SYCP2L:range=chr6:10887360-109640395'pad=0,hg19_refFlat_SYCP2L:range=chr6:10887360-109640395'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90chr16:29802058-29804294"	NA	inter
CUST_6575_PI429285431	10.267455	P	10.649665	P	0.767261356612012	0	lncRNA	6523-1_{1..545}	"transcript_id ""ENST00000597550.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597550.1"" | genecode_v17"	chr19	 53700364	 53700908	+	ENSG00000269051.1	ENST00000597550.1	CTD-2245F17.3	CTD-2245F17.3-001	ZNF665	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10chr19:53690364-53696619"	NA	inter
CUST_32754_PI429285431	0.9095294	A	1.64972	A	0.598660255771908	0	lncRNA	34391-1_{1..2428}	n339386|AK125532|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1818|NULL|-1.0034800|-0.3088309	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339386|AK125532|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1818|NULL|-1.0034800|-0.3088309	chr3	 64547386	 64549813	+	NA	NA	NA	NA	ADAMTS9	"hg19_refFlat_ADAMTS9:range=chr3:64507847-646733335'pad=0,hg19_refFlat_ADAMTS9:range=chr3:64507847-646733335'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00chr3:64537386-64584862"	NA	inner
CUST_24672_PI429285431	0.90634775	A	0.9055054	A	1.00058404301429	0	lncRNA	26219-1_{1..283}	lnc-PXDNL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PXDNL-1:1	chr8	 52808751	 52809033	-	lnc-PXDNL-1	lnc-PXDNL-1:1	ENSG00000253475.1	RP11-110G21.2	LOC100287313	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60chr8:52811842-52818934"	NA	inner
CUST_12872_PI429285431	0.9161025	A	0.91840655	A	0.998404228837592	0	lncRNA	14499-1_{1..3000}	lnc-C5orf17-8:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf17-8:13	chr5	 27485033	 27488032	+	lnc-C5orf17-8	lnc-C5orf17-8:13	XLOC_004323	linc-CDH6-5	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00"	NA	inter
CUST_11840_PI429285431	4.2365017	P	4.4256144	P	0.877145025515644	0	lncRNA	13417-1_{1..1604}	lnc-TCIRG1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCIRG1-2:1	chr11	 67897646	 67899249	+	lnc-TCIRG1-2	lnc-TCIRG1-2:1	XLOC_009183	linc-LRP5-3	CHKA	NA	chr11:67887646-67888858	inter
CUST_45021_PI429285431	1.7499406	A	2.4319463	A	0.62329813451982	0	lncRNA	49522-1_{1..3000}	"gi|253970399|ref|NR_028038.1| Homo sapiens GATS, stromal antigen 3 opposite strand (GATS), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|253970399|ref|NR_028038.1| Homo sapiens GATS, stromal antigen 3 opposite strand (GATS), transcript variant 2, non-coding RNA"	Chr7	 99806559	 99809558	-	352954	NR_028038.1	NA	NA	NA	"hg19_refFlat_STAG3:range=chr7:99778180-998116385'pad=0,hg19_refFlat_STAG3:range=chr7:99778180-998116385'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30"	NA	inter
CUST_13951_PI429285431	3.462978	P	3.9554517	P	0.710805278453605	0	lncRNA	15598-1_{1..3000}	lnc-FAM120B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM120B-3:2	chr6	170491080	170494079	+	lnc-FAM120B-3	lnc-FAM120B-3:2	XLOC_005563	linc-FAM120B-2	NA	NA	NA	inter
LNCA_21_P0003580	2.9419458	A	2.4451234	A	1.41110212189729	0	lncRNA	TCONS_00008002	NA	NA	NA	NA	XLOC_003468	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003468), lincRNA [TCONS_00008002]"	chr4:16290367-16290426	hs|4p15.32	Agilent_HUMAN_G3V2	TCONS_00008002	TCONS_00008002	chr4	 16290367	 16290426	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17500_PI429285431	0.89268935	A	0.8904984	A	1.00151980454936	0	lncRNA	19225-1_{1..1455}	lnc-MAFB-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAFB-2:3	chr20	 38286983	 38288437	-	lnc-MAFB-2	lnc-MAFB-2:3	XLOC_013742	linc-KIAA1755-8	NA	NA	NA	inter
LNCA_21_P0002535	0.9118018	A	0.8994704	A	1.0085841091096	0	lncRNA	TCONS_00004564	NA	NA	NA	NA	XLOC_002473	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002473), lincRNA [TCONS_00004564]"	chr2:208041487-208041428	hs|2q33.3	Agilent_HUMAN_G3V2	TCONS_00004564	TCONS_00004564	chr2	208041428	208041487	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33708_PI429285431	2.2056255	A	0.99853724	A	2.30871207118464	0	lncRNA	35268-1_{1..1616}	n340486|BC042046|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2947|NULL|1.1809900|-0.2803615	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n340486|BC042046|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2947|NULL|1.1809900|-0.2803615	chr5	 67089040	 67090655	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51312_PI429285431	3.5137093	P	4.3507037	P	0.559808617289585	0	lncRNA	54917-1_{1..947}	hg19_lincRNAsTranscripts_TCONS_l2_00008603 range=chr15:42867759-42931162 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008603 range=chr15:42867759-42931162 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 42867759	 42868705	+	NA	NA	NA	NA	STARD9	NA	chr15:42867857-42941162	inner
CUST_8636_PI429285431	1.7671292	A	2.2901092	A	0.695932843526445	0	lncRNA	10188-1_{1..2228}	lnc-KLF14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-KLF14-1:1	chr7	130597710	130599937	-	lnc-KLF14-1	lnc-KLF14-1:1	ENSG00000226380	AC058791.1	NA	NA	NA	inter
CUST_37319_PI429285431	1.0911145	A	1.0209589	A	1.0498299055583	0	lncRNA	38426-1_{1..2108}	n345763|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1312|NULL|-1.4137400|-0.3706969	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345763|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1312|NULL|-1.4137400|-0.3706969	chr13	109864390	109866497	-	NA	NA	NA	NA	MYO16	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr13:109854390-109860355"	NA	inter
CUST_42971_PI429285431	8.679058	P	8.780264	P	0.932253362042123	0	lncRNA	46115-1_{1..90}	ENST00000391002 ncrna:snoRNA chromosome:GRCh37:20:47897220:47897309:1 gene:ENSG00000212304 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391002 ncrna:snoRNA chromosome:GRCh37:20:47897220:47897309:1 gene:ENSG00000212304 gene_biotype:snoRNA transcript_biotype:snoRNA	chr20	 47897220	 47897309	+	ENSG00000212304	ENST00000391002	NA	NA	ZNFX1	NA	chr20:47887220-47894756	inter
CUST_49360_PI429285431	5.6482344	P	4.216973	P	2.69682405318082	0	lncRNA	53173-1_{1..1752}	hg19_lincRNAsTranscripts_TCONS_l2_00022445 range=chr5:97912188-97914015 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022445 range=chr5:97912188-97914015 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 97912188	 97913939	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18310_PI429285431	5.7533607	P	6.2635984	P	0.702106748469168	0	lncRNA	20037-1_{1..2522}	lnc-CAND2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CAND2-2:1	chr3	 13057218	 13059739	+	lnc-CAND2-2	lnc-CAND2-2:1	ENSG00000246066	AC069271.1	IQSEC1	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90chr3:13047218-13067307"	NA	inner
CUST_527_PI429285431	1.423617	A	1.5989356	A	0.885571930731143	0	lncRNA	519-1_{1..779}	"transcript_id ""ENST00000420807.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420807.1"" | genecode_v17"	chr1	193273875	193274653	+	ENSG00000232077.1	ENST00000420807.1	RP11-452J13.1	RP11-452J13.1-001	NA	NA	NA	inter
LNCA_21_P0006400	3.4567475	P	4.5447235	P	0.470420879393551	0	lncRNA	TCONS_00016901	NA	NA	NA	NA	XLOC_007895	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007895), lincRNA [TCONS_00016901]"	chr9:139159249-139158402	hs|9q34.3	Agilent_HUMAN_G3V2	TCONS_00016901	TCONS_00016901	chr9	139158402	139159249	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010025	1.8217955	A	1.017226	A	1.74662452154891	0	lncRNA	TCONS_00028348	NA	NA	NA	NA	XLOC_013697	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013697), lincRNA [TCONS_00028348]"	chr20:24072508-24072449	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028348	TCONS_00028348	chr20	 24072449	 24072508	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9595_PI429285431	3.113146	P	2.968949	A	1.10511537799631	0	lncRNA	11110-1_{1..333}	lnc-ZFP42-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP42-2:4	chr4	188581291	188581623	+	lnc-ZFP42-2	lnc-ZFP42-2:4	XLOC_003829	linc-ZFP42-3	NA	NA	NA	inter
LNCA_21_P0012482	5.3565516	P	4.83845	P	1.43206958936587	0	lncRNA	XR_108533	XR_108533	XR_108533	NA	NA	LOC100505902	uncharacterized LOC100505902	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505902 (LOC100505902), miscRNA [XR_108533]"	chr3:193770192-193733409	hs|3q29	Agilent_HUMAN_G3V2	XR_108533	XR_108533	chr3	193733409	193770192	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35405_PI429285431	2.3695083	A	2.7881498	A	0.74812876104294	0	lncRNA	36816-1_{1..1830}	n342465|AK093187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4959|NULL|-1.0406000|-0.1910221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342465|AK093187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4959|NULL|-1.0406000|-0.1910221	chr2	231275414	231277243	-	NA	NA	NA	NA	SP100	NA	chr2:231280871-231287244	inter
CUST_50535_PI429285431	0.9185797	A	0.9465752	A	0.980782063202228	0	lncRNA	54229-1_{1..1698}	hg19_lincRNAsTranscripts_TCONS_l2_00030392 range=chrX:149114224-149129463 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030392 range=chrX:149114224-149129463 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	149114224	149115921	+	NA	NA	NA	NA	CXorf40B	NA	chrX:149104224-149106716	inter
CUST_8751_PI429285431	0.9071214	A	0.9048775	A	1.00155656314721	0	lncRNA	10293-1_{1..2590}	lnc-DBNL-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DBNL-1:2	chr7	 44079493	 44082082	+	lnc-DBNL-1	lnc-DBNL-1:2	ENSG00000235314	AC017116.8	DBNL	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-56.70;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RASA4:range=chr7:102223218-1022571365'pad=0,hg19_refFlat_RASA4:range=chr7:102223218-1022571365'pad=0 3'pad=0 strand=- repeatMasking=none,-105.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.00chr7:44084239-44091905"	NA	inter
CUST_12754_PI429285431	4.044164	P	4.2771	P	0.850901475866665	0	lncRNA	14378-1_{1..1232}	lnc-AC092327.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092327.1-3:1	chr16	 86234524	 86235755	-	lnc-AC092327.1-3	lnc-AC092327.1-3:1	XLOC_012043	linc-COX4NB-4	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20"	NA	inter
CUST_21858_PI429285431	1.2412195	A	1.4755058	A	0.850105441567025	0	lncRNA	23468-1_{1..479}	lnc-FMN1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FMN1-4:2	chr15	 33602351	 33602829	-	lnc-FMN1-4	lnc-FMN1-4:2	ENSG00000259446.1	RP11-489D6.2	RYR3	NA	chr15:33603177-33612447	inter
CUST_13270_PI429285431	0.90998614	A	0.9108678	A	0.999389066552669	0	lncRNA	14902-1_{1..412}	lnc-NDUFV2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDUFV2-1:4	chr18	  8979233	  8979644	+	lnc-NDUFV2-1	lnc-NDUFV2-1:4	XLOC_012622	linc-NDUFV2	NA	NA	NA	inter
CUST_24091_PI429285431	3.1763737	P	3.3737226	P	0.872151759910109	0	lncRNA	25642-1_{1..289}	lnc-RTL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RTL1-1:1	chr14	101327221	101327509	-	lnc-RTL1-1	lnc-RTL1-1:1	ENSG00000258663.1	RP11-123M6.2	NA	NA	NA	inter
CUST_21499_PI429285431	0.8963662	A	1.0697694	A	0.886748444773399	0	lncRNA	23117-1_{1..1586}	lnc-SRSF6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SRSF6-2:1	chr20	 41599466	 41601051	+	lnc-SRSF6-2	lnc-SRSF6-2:1	ENSG00000227599.1	RP4-753D4.2	PTPRT	NA	chr20:41589466-41610132	inner
CUST_12785_PI429285431	3.690494	P	3.4016018	P	1.22170181115679	0	lncRNA	14411-1_{1..284}	lnc-LYZL1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYZL1-6:1	chr10	 30128483	 30128766	+	lnc-LYZL1-6	lnc-LYZL1-6:1	XLOC_008433	linc-MAP3K8-3	NA	NA	NA	inter
CUST_46201_PI429285431	7.093591	P	7.1609488	P	0.954384289788802	0	lncRNA	50445-1_{1..3000}	"gi|213688420|ref|NR_024507.1| Homo sapiens long intergenic non-protein coding RNA 598 (LINC00598), transcript variant TTL-B2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|213688420|ref|NR_024507.1| Homo sapiens long intergenic non-protein coding RNA 598 (LINC00598), transcript variant TTL-B2, non-coding RNA"	Chr13	 40921269	 40924268	-	646982	NR_024507.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
CUST_49341_PI429285431	5.3823786	P	5.177488	P	1.15259894155961	0	lncRNA	53153-1_{1..777}	hg19_lincRNAsTranscripts_TCONS_l2_00022363 range=chr5:72021227-72022109 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022363 range=chr5:72021227-72022109 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 72021227	 72022003	+	NA	NA	NA	NA	TNPO1	NA	chr5:72021244-72032109	inter
CUST_27785_PI429285431	1.1238773	M	0.9676089	A	1.11440095547266	0	lncRNA	29370-1_{1..1213}	n325010|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078484|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078484|-0.9511580|-0.2172629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325010|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078484|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078484|-0.9511580|-0.2172629	chr20	 26115654	 26116866	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8257_PI429285431	2.0677834	A	2.7494118	A	0.623461163527039	0	lncRNA	9846-1_{1..2292}	lnc-FUBP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-FUBP1-1:1	chr1	 78355153	 78357444	-	lnc-FUBP1-1	lnc-FUBP1-1:1	ENSG00000235927	C1orf118	NEXN	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20chr1:78354200-78365224"	NA	inner
CUST_32167_PI429285431	2.2090054	A	4.2290897	A	0.246543769581128	0	lncRNA	33867-1_{1..496}	n338738|AB032363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1158|NULL|-1.0746700|-0.3057897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338738|AB032363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1158|NULL|-1.0746700|-0.3057897	chr2	 29872442	 29872937	+	NA	NA	NA	NA	ALK	NA	chr2:29862442-29882802	inner
LNCA_21_P0010033	0.92600584	A	1.5184727	A	0.663207919701052	0	lncRNA	TCONS_00028365	NA	NA	NA	NA	XLOC_013720	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013720), lincRNA [TCONS_00028365]"	chr20:30691087-30691028	hs|20q11.21	Agilent_HUMAN_G3V2	TCONS_00028365	TCONS_00028365	chr20	 30691028	 30691087	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27902_PI429285431	0.9201596	A	0.9138617	A	1.00437491374308	0	lncRNA	29497-1_{1..3000}	n325140|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331858|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331858|0.4064710|-0.3420821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325140|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331858|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331858|0.4064710|-0.3420821	chr2	132111067	132114066	+	NA	NA	NA	NA	WTH3DI	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40chr2:132101067-132121731"	NA	inner
CUST_44293_PI429285431	11.03609	P	11.828215	P	0.57749285416613	0	lncRNA	48926-1_{1..1262}	"gi|373432630|ref|NR_046073.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 19 (DNAJC19), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373432630|ref|NR_046073.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 19 (DNAJC19), transcript variant 8, non-coding RNA"	Chr3	180701497	180702758	-	131118	NR_046073.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10"	NA	inter
LNCA_21_P0006785	2.0263274	A	0.9166827	A	2.15792496417524	0	lncRNA	ENST00000429420	NA	NA	NA	NA	XLOC_008919	NA	ENST00000429420	THC2693441	NA	"BROAD Institute lincRNA (XLOC_008919), lincRNA [TCONS_00018032]"	chr10:102095424-102095365	hs|10q24.31	Agilent_HUMAN_G3V2	ENST00000429420	ENST00000429420	chr10	102095365	102095424	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3286_PI429285431	6.215659	P	4.5918927	P	3.08178517925152	0	lncRNA	3264-1_{1..553}	"transcript_id ""ENST00000533992.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533992.1"" | genecode_v17"	chr8	123426571	123427123	-	ENSG00000255364.1	ENST00000533992.1	RP11-94A24.1	RP11-94A24.1-001	NA	NA	NA	inter
CUST_35745_PI429285431	1.0821757	A	0.9162739	A	1.12186711574298	0	lncRNA	37165-1_{1..1406}	n342921|AK026221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5429|NULL|-1.1512500|-0.5049407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342921|AK026221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5429|NULL|-1.1512500|-0.5049407	chr6	122964532	122965937	+	NA	NA	NA	NA	PKIB	NA	chr6:122954532-122975922	inner
CUST_46312_PI429285431	2.6661053	A	2.7178497	A	0.964769096059421	0	lncRNA	50543-1_{1..2246}	"gi|315623362|ref|NR_037676.1| Homo sapiens FRMD6 antisense RNA 1 (FRMD6-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315623362|ref|NR_037676.1| Homo sapiens FRMD6 antisense RNA 1 (FRMD6-AS1), non-coding RNA"	Chr14	 52116234	 52118479	-	145438	NR_037676.1	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-23.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-58.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-20.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00"	NA	inter
CUST_23234_PI429285431	11.695417	P	11.681585	P	1.00963372019017	0	lncRNA	24806-1_{1..2557}	lnc-C17orf61-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf61-1:1	chr17	  7307319	  7309875	-	lnc-C17orf61-1	lnc-C17orf61-1:1	ENSG00000262481.1	C17orf61-PLSCR3	C17orf61	NA	chr17:7306293-7307450	inner
CUST_13396_PI429285431	4.638812	P	4.654095	P	0.989462543759386	0	lncRNA	15033-1_{1..818}	lnc-PKDCC-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PKDCC-2:2	chr2	 42104790	 42105607	+	lnc-PKDCC-2	lnc-PKDCC-2:2	XLOC_001441	linc-PKDCC-2	NA	NA	NA	inter
CUST_45274_PI429285431	5.333838	P	1.1773093	A	17.8336326520749	0	lncRNA	49723-1_{1..3000}	"gi|325910846|ref|NR_037944.1| Homo sapiens WNT1 inducible signaling pathway protein 1 (WISP1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|325910846|ref|NR_037944.1| Homo sapiens WNT1 inducible signaling pathway protein 1 (WISP1), transcript variant 5, non-coding RNA"	Chr8	134203282	134206281	+	8840	NR_037944.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0005972	0.9458057	A	0.9196826	A	1.01827208156711	0	lncRNA	TCONS_00015488	NA	NA	NA	NA	XLOC_007182	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007182), lincRNA [TCONS_00015488]"	chr8:111994812-111994753	hs|8q23.2	Agilent_HUMAN_G3V2	TCONS_00015488	TCONS_00015488	chr8	111994753	111994812	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6559_PI429285431	2.417695	A	4.28153	P	0.2747449749837	0	lncRNA	6507-1_{1..575}	"transcript_id ""ENST00000600998.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600998.1"" | genecode_v17"	chr19	 50578380	 50578954	+	ENSG00000267890.1	ENST00000600998.1	CTD-2126E3.4	CTD-2126E3.4-001	LOC100287477	NA	chr19:50568380-50577699	inter
CUST_5714_PI429285431	1.8824043	A	2.6457207	A	0.589140484295499	0	lncRNA	5638-1_{1..549}	"transcript_id ""ENST00000571890.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000571890.1"" | genecode_v17"	chr17	  3880397	  3880945	+	ENSG00000263312.1	ENST00000571890.1	RP11-459C13.1	RP11-459C13.1-001	NA	NA	NA	inter
LNCA_21_P0011507	0.9543447	A	1.2120407	A	0.836422629598327	0	lncRNA	AL137382	NA	AL137382	NA	NA	SLC22A31	"solute carrier family 22, member 31"	NA	THC2667705	GO:0016020|GO:0022857|GO:0016021|GO:0006811	"BROAD Institute lincRNA (XLOC_l2_005602), lincRNA [TCONS_l2_00010489]"	chr16:89263022-89262963	hs|16q24.3	Agilent_HUMAN_G3V2	AL137382	AL137382	chr16	 89262963	 89263022	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3755_PI429285431	1.1807837	A	2.022882	A	0.557831651244981	0	lncRNA	3724-1_{1..674}	"transcript_id ""ENST00000437892.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000437892.1"" | genecode_v17"	chr10	 86039747	 86040420	+	ENSG00000229404.1	ENST00000437892.1	LINC00858	LINC00858-002	NA	NA	NA	inter
CUST_34268_PI429285431	0.9046445	A	0.8979882	A	1.00462445552074	0	lncRNA	35769-1_{1..1873}	n341126|AK054824|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3592|NULL|-1.0043300|-0.2220646	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341126|AK054824|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3592|NULL|-1.0043300|-0.2220646	chr11	113138572	113140444	-	NA	NA	NA	NA	NCAM1	NA	chr11:113128572-113149158	inner
CUST_15758_PI429285431	2.3449597	A	2.5363727	A	0.875747579108088	0	lncRNA	17446-1_{1..345}	lnc-SATB1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SATB1-1:2	chr3	 19053460	 19053804	-	lnc-SATB1-1	lnc-SATB1-1:2	XLOC_003063	linc-SATB1-1	NA	NA	NA	inter
CUST_21612_PI429285431	4.285266	P	4.7930193	P	0.703316856441476	0	lncRNA	23225-1_{1..723}	lnc-MYOM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYOM1-1:1	chr18	  3261608	  3262330	-	lnc-MYOM1-1	lnc-MYOM1-1:1	ENSG00000264235.1	RP13-270P17.1	MYL12B	"hg19_refFlat_MYL12B:range=chr18:3272897-32779355'pad=0,hg19_refFlat_MYL12B:range=chr18:3272897-32779355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MYL12A:range=chr18:3253246-32559165'pad=0,hg19_refFlat_MYL12A:range=chr18:3253246-32559165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00chr18:3262111-3271848"	NA	inter
CUST_41045_PI429285431	1.2514322	A	1.2770256	A	0.982416434253502	0	lncRNA	41706-1_{1..703}	n411714|NR_044997_2|lncRNA|Homosapiens||RefGeneNoncode|NR_044997_2||-1.2775700|-0.4715801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411714|NR_044997_2|lncRNA|Homosapiens||RefGeneNoncode|NR_044997_2||-1.2775700|-0.4715801	chr6	  4449531	  4450233	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30376_PI429285431	2.9429543	A	3.5448494	P	0.658887882613949	0	lncRNA	32152-1_{1..239}	n335486|BC054012|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259398|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259398|-1.1376600|-0.1753415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335486|BC054012|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259398|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259398|-1.1376600|-0.1753415	chr19	 36031524	 36031762	-	NA	NA	NA	NA	ATP4A	NA	chr19:36041095-36041763	inner
CUST_38563_PI429285431	5.922621	P	6.035633	P	0.924655587012756	0	lncRNA	39574-1_{1..1898}	n383499|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002odv.1||0.3628380|-0.2003488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n383499|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002odv.1||0.3628380|-0.2003488	chr19	 36810617	 36812514	-	NA	NA	NA	NA	ZFP14	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.01;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10chr19:36825355-36832610"	NA	inter
CUST_2902_PI429285431	1.8243028	A	2.5914764	A	0.587567457757744	0	lncRNA	2883-1_{1..388}	"transcript_id ""ENST00000412410.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412410.1"" | genecode_v17"	chr7	109162038	109162425	-	ENSG00000234273.1	ENST00000412410.1	AC073071.1	AC073071.1-001	NA	NA	NA	inter
CUST_13068_PI429285431	1.5576528	A	0.9217604	A	1.55389863938858	0	lncRNA	14695-1_{1..1051}	lnc-IFI44-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IFI44-2:2	chr1	 79869657	 79870707	+	lnc-IFI44-2	lnc-IFI44-2:2	XLOC_000266	linc-LPHN2-2	NA	NA	NA	inter
CUST_47912_PI429285431	1.0212765	A	1.2686899	A	0.842405406135876	0	lncRNA	51803-1_{1..2888}	"gi|410172005|ref|XR_171528.1| PREDICTED: Homo sapiens uncharacterized LOC101060244 (LOC101060244), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172005|ref|XR_171528.1| PREDICTED: Homo sapiens uncharacterized LOC101060244 (LOC101060244), misc_RNA"	NA	NA	NA	NA	NA	XR_171528.1	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00"	NA	Unknown
CUST_21519_PI429285431	0.8976002	A	0.8995595	A	0.998642838506883	0	lncRNA	23137-1_{1..382}	lnc-ISLR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ISLR-1:1	chr15	 74596393	 74596774	+	lnc-ISLR-1	lnc-ISLR-1:1	ENSG00000261384.1	RP11-60L3.2	CCDC33	NA	chr15:74586393-74606684	inner
CUST_5790_PI429285431	2.5256443	A	2.2581398	A	1.20372388592841	0	lncRNA	5712-1_{1..357}	"transcript_id ""ENST00000580280.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580280.1"" | genecode_v17"	chr17	 25325106	 25325462	-	ENSG00000264734.1	ENST00000580280.1	RP11-260A9.6	RP11-260A9.6-002	NA	NA	NA	inter
CUST_20638_PI429285431	9.388944	P	9.318003	P	1.05040158624139	0	lncRNA	22277-1_{1..567}	lnc-MFAP4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MFAP4-1:1	chr17	 19315883	 19316449	-	lnc-MFAP4-1	lnc-MFAP4-1:1	ENSG00000265126.1	CTB-187M2.2	RNF112	"hg19_refFlat_RNF112:range=chr17:19314722-193194885'pad=0,hg19_refFlat_RNF112:range=chr17:19314722-193194885'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.80chr17:19314491-19320589"	NA	inner
CUST_43052_PI429285431	3.6225863	P	3.5301669	A	1.06615662907364	0	lncRNA	46751-1_{1..128}	ENST00000517290 ncrna:snRNA chromosome:GRCh37:11:111253817:111253944:1 gene:ENSG00000253099 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517290 ncrna:snRNA chromosome:GRCh37:11:111253817:111253944:1 gene:ENSG00000253099 gene_biotype:snRNA transcript_biotype:snRNA	chr11	111253817	111253944	+	ENSG00000253099	ENST00000517290	NA	NA	POU2AF1	NA	chr11:111243817-111250157	inter
CUST_35392_PI429285431	0.9237515	A	0.914586	A	1.00637326384905	0	lncRNA	36799-2_{3001..3529}	n342447|BC036114|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4940|NULL|-1.2120200|-0.4006856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342447|BC036114|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4940|NULL|-1.2120200|-0.4006856	chr2	132397602	132398130	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48446_PI429285431	11.583062	P	11.517423	P	1.04654837545588	0	lncRNA	52300-1_{1..286}	hg19_lincRNAsTranscripts_TCONS_l2_00000739 range=chr1:192685463-192685814 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000739 range=chr1:192685463-192685814 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	192685463	192685748	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42433_PI429285431	1.620421	A	0.9507785	A	1.59067874828805	0	lncRNA	45156-1_{1..122}	ENST00000391322 ncrna:snoRNA chromosome:GRCh37:1:52190447:52190568:-1 gene:ENSG00000212624 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391322 ncrna:snoRNA chromosome:GRCh37:1:52190447:52190568:-1 gene:ENSG00000212624 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 52190447	 52190568	-	ENSG00000212624	ENST00000391322	NA	NA	OSBPL9	NA	chr1:52180447-52200568	inner
CUST_15432_PI429285431	0.9225701	A	1.5363657	A	0.65347520428715	0	lncRNA	17119-1_{1..2383}	lnc-TMEM132D-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132D-3:2	chr12	130646507	130648889	-	lnc-TMEM132D-3	lnc-TMEM132D-3:2	XLOC_010263	linc-TMEM132D-1	FZD10	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30chr12:130647004-130650285"	NA	inter
CUST_806_PI429285431	0.90041816	A	1.4102322	A	0.702312958524629	0	lncRNA	799-1_{1..636}	"transcript_id ""ENST00000450551.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450551.1"" | genecode_v17"	chr2	 22156208	 22156843	-	ENSG00000231200.1	ENST00000450551.1	AC068490.2	AC068490.2-001	NA	NA	NA	inter
CUST_29909_PI429285431	9.400679	P	9.274489	P	1.09140760375011	0	lncRNA	31672-1_{1..212}	n334026|M24790|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194956|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194956|0.8033130|-0.1107541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334026|M24790|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194956|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194956|0.8033130|-0.1107541	chr11	  2191908	  2192119	-	NA	NA	NA	NA	INS-IGF2	NA	chr11:2181908-2182439	inner
CUST_35529_PI429285431	0.91516507	A	0.91019654	A	1.00344985967603	0	lncRNA	36947-1_{1..2006}	n342650|BC034574|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5152|NULL|0.4390240|-0.2199505	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342650|BC034574|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5152|NULL|0.4390240|-0.2199505	chr5	 28925704	 28927709	-	NA	NA	NA	NA	NA	"hg19_refFlat_STRN:range=chr2:37076599-371936065'pad=0,hg19_refFlat_STRN:range=chr2:37076599-371936065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_LSP1:range=chr11:1874375-19087935'pad=0,hg19_refFlat_LSP1:range=chr11:1874375-19087935'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.60;hg19_refFlat_LSP1:range=chr11:1901450-19087935'pad=0,hg19_refFlat_LSP1:range=chr11:1901450-19087935'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.60;hg19_refFlat_LSP1:range=chr11:1887705-19087935'pad=0,hg19_refFlat_LSP1:range=chr11:1887705-19087935'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.60"	NA	inter
CUST_12905_PI429285431	2.925567	A	2.758154	A	1.12304286930248	0	lncRNA	14534-1_{1..232}	lnc-MOCS3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MOCS3-3:1	chr20	 49759110	 49759341	+	lnc-MOCS3-3	lnc-MOCS3-3:1	XLOC_013564	linc-TSHZ2-4	NA	NA	NA	inter
CUST_28270_PI429285431	2.6784084	A	2.846267	P	0.890162974750518	0	lncRNA	29905-1_{1..525}	n325564|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000132556|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000132556|-1.3106400|-0.3076676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325564|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000132556|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000132556|-1.3106400|-0.3076676	chr17	 19300994	 19301518	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15649_PI429285431	3.0499935	A	3.4142067	P	0.776892451927242	0	lncRNA	17342-1_{1..302}	lnc-ANKRD27-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD27-2:3	chr19	 32895897	 32896198	-	lnc-ANKRD27-2	lnc-ANKRD27-2:3	XLOC_013300	linc-TSHZ3-6	DPY19L3	NA	chr19:32896655-32906035	inter
CUST_21327_PI429285431	0.91910285	A	0.91084075	A	1.00574328108216	0	lncRNA	22950-1_{1..504}	lnc-RFXAP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RFXAP-1:1	chr13	 37424077	 37424580	+	lnc-RFXAP-1	lnc-RFXAP-1:1	ENSG00000236711.1	SMAD9-AS1	SMAD9	NA	chr13:37418968-37434183	inner
CUST_20828_PI429285431	0.90784305	A	1.2321266	A	0.798694924017512	0	lncRNA	22459-1_{1..546}	lnc-CCDC82-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC82-3:3	chr11	 97813606	 97814151	-	lnc-CCDC82-3	lnc-CCDC82-3:3	ENSG00000255502.1	RP11-379J13.2	NA	NA	NA	inter
LNCA_21_P0002417	2.2616699	A	1.6160356	A	1.56442695612481	0	lncRNA	TCONS_00004194	NA	NA	NA	NA	XLOC_002041	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002041), lincRNA [TCONS_00004194]"	chr2:30566708-30566649	hs|2p23.1	Agilent_HUMAN_G3V2	TCONS_00004194	TCONS_00004194	chr2	 30566649	 30566708	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010926	0.9249519	A	0.91731393	A	1.00530827661012	0	lncRNA	ENST00000438082	NA	NA	NA	NA	XLOC_l2_001667	NA	ENST00000438082	THC2703657	NA	"BROAD Institute lincRNA (XLOC_l2_001667), lincRNA [TCONS_l2_00004012]"	chr10:89418910-89418969	hs|10q23.2	Agilent_HUMAN_G3V2	ENST00000438082	ENST00000438082	chr10	 89418910	 89418969	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20360_PI429285431	3.949852	P	4.3600874	P	0.75250058054135	0	lncRNA	22001-1_{1..325}	lnc-PTPRZ1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPRZ1-4:1	chr7	122067230	122067554	+	lnc-PTPRZ1-4	lnc-PTPRZ1-4:1	ENSG00000228276.1	RP5-1101C3.1	CADPS2	NA	chr7:122057230-122077495	inner
CUST_14666_PI429285431	0.9007183	A	0.89831245	A	1.00166899937605	0	lncRNA	16335-1_{1..575}	lnc-UBL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBL3-1:1	chr13	 30500640	 30501214	-	lnc-UBL3-1	lnc-UBL3-1:1	XLOC_010552	linc-UBL3-3	NA	NA	NA	inter
CUST_3021_PI429285431	0.8982405	A	1.101918	A	0.868334313329921	0	lncRNA	3000-1_{1..561}	"transcript_id ""ENST00000520920.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520920.1"" | genecode_v17"	chr8	 18942502	 18943062	-	ENSG00000253557.1	ENST00000520920.1	RP11-1080G15.1	RP11-1080G15.1-002	SH2D4A	NA	chr8:19095947-19126979	inter
CUST_48358_PI429285431	0.89650804	A	0.89459467	A	1.00132712687537	0	lncRNA	52214-1_{1..408}	hg19_lincRNAsTranscripts_TCONS_l2_00000360 range=chr1:83912390-83928345 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000360 range=chr1:83912390-83928345 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 83912390	 83912797	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47406_PI429285431	6.956848	P	7.403109	P	0.733942527425223	0	lncRNA	51449-1_{1..971}	"gi|219521864|ref|NR_026548.1| Homo sapiens chromosome 21 open reading frame 90 (C21orf90), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219521864|ref|NR_026548.1| Homo sapiens chromosome 21 open reading frame 90 (C21orf90), transcript variant 2, non-coding RNA"	NW_004775435.1	    20538	    21508	+	114043	NR_026548.1	NA	NA	NA	NA	NA	Unknown
CUST_51625_PI429285431	2.4898427	A	1.9048771	A	1.50000322238805	0	lncRNA	55196-1_{1..808}	hg19_lincRNAsTranscripts_TCONS_l2_00011248 range=chr17:41453354-41465672 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011248 range=chr17:41453354-41465672 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 41453354	 41454161	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6795_PI429285431	1.1157674	A	0.9026338	A	1.15920329433314	0	lncRNA	6743-1_{1..412}	"transcript_id ""ENST00000443479.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443479.1"" | genecode_v17"	chr21	 21265593	 21266004	-	ENSG00000233480.1	ENST00000443479.1	AP000946.2	AP000946.2-001	NA	NA	NA	inter
CUST_23221_PI429285431	1.6411651	A	1.6873946	A	0.968464116336797	0	lncRNA	24793-1_{1..520}	lnc-MELK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MELK-1:1	chr9	 36860881	 36861400	+	lnc-MELK-1	lnc-MELK-1:1	ENSG00000258885.1	RP11-344B23.2	PAX5	NA	chr9:36850881-36871372	inner
CUST_30648_PI429285431	2.650301	A	3.2835677	P	0.644714930791835	0	lncRNA	32430-1_{1..378}	n336027|X81746|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323875|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323875|3.1131500|-0.1089690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336027|X81746|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323875|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323875|3.1131500|-0.1089690	chr14	106330425	106330802	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51061_PI429285431	0.90815437	A	0.89691675	A	1.00781974032954	0	lncRNA	54699-1_{1..1907}	hg19_lincRNAsTranscripts_TCONS_l2_00007086 range=chr13:25325763-25329506 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007086 range=chr13:25325763-25329506 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 25325763	 25327669	-	NA	NA	NA	NA	RNF17	NA	chr13:25338301-25339506	inter
CUST_2461_PI429285431	0.9026583	A	1.3532193	A	0.731758244373582	0	lncRNA	2453-1_{1..732}	"transcript_id ""ENST00000603854.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603854.1"" | genecode_v17"	chr6	  1026729	  1027460	-	ENSG00000270937.1	ENST00000603854.1	RP5-856G1.1	RP5-856G1.1-001	NA	NA	NA	inter
CUST_44265_PI429285431	5.6508837	P	6.3502164	P	0.615856997522228	0	lncRNA	48906-1_{1..640}	"gi|300360527|ref|NR_034032.1| Homo sapiens uncharacterized LOC100289361 (LOC100289361), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300360527|ref|NR_034032.1| Homo sapiens uncharacterized LOC100289361 (LOC100289361), non-coding RNA"	Chr3	142719687	142720326	-	100289361	NR_034032.1	NA	NA	NA	NA	NA	inter
CUST_10480_PI429285431	0.89802873	A	0.90289956	A	0.996629490880096	0	lncRNA	12007-1_{1..615}	lnc-TRPM1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRPM1-1:8	chr15	 31521475	 31522089	-	lnc-TRPM1-1	lnc-TRPM1-1:8	XLOC_011413	linc-TRPM1	LOC283710	NA	chr15:31514970-31523050	inner
LNCA_21_P0013450	0.9149032	A	0.90300184	A	1.00828351413918	0	lncRNA	ENST00000419883	NA	NA	NA	NA	XLOC_l2_013967	NA	ENST00000419883	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013967), lincRNA [TCONS_l2_00027461]"	chr7:114763698-114701594	hs|7q31.2	Agilent_HUMAN_G3V2	ENST00000419883	ENST00000419883	chr7	114701594	114763698	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_866_PI429285431	2.3344088	A	1.8761891	A	1.37384543277661	0	lncRNA	860-1_{1..1892}	"transcript_id ""ENST00000419035.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419035.1"" | genecode_v17"	chr2	 47441088	 47442979	-	ENSG00000234690.2	ENST00000419035.1	AC073283.4	AC073283.4-001	NA	NA	NA	inter
CUST_30897_PI429285431	0.8993419	A	0.9008026	A	0.998988032298378	0	lncRNA	32685-1_{1..284}	n336922|AY946017|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000333204|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000333204|0.4072340|-0.1604374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336922|AY946017|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000333204|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000333204|0.4072340|-0.1604374	chr17	  7554917	  7555200	+	NA	NA	NA	NA	ATP1B2	NA	chr17:7554254-7561089	inner
CUST_21963_PI429285431	0.89661145	A	1.8760343	A	0.507182597660767	0	lncRNA	23571-1_{1..549}	lnc-OGFOD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OGFOD1-1:1	chr16	 56445341	 56445889	+	lnc-OGFOD1-1	lnc-OGFOD1-1:1	ENSG00000260621.1	RP11-413H22.2	AMFR	"hg19_refFlat_AMFR:range=chr16:56396821-564592395'pad=0,hg19_refFlat_AMFR:range=chr16:56396821-564592395'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10chr16:56435341-56455595"	NA	inner
CUST_37112_PI429285431	0.9148581	A	0.90107983	A	1.00959611930565	0	lncRNA	38237-1_{1..2076}	n345555|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1104|NULL|-1.3327300|-0.3423447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345555|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1104|NULL|-1.3327300|-0.3423447	chr2	178239646	178241721	-	NA	NA	NA	NA	AGPS	NA	chr2:178257471-178266739	inter
CUST_23591_PI429285431	6.2577453	P	6.361107	P	0.930861413064827	0	lncRNA	25158-1_{1..588}	lnc-C2orf54-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf54-1:3	chr2	241898657	241899244	-	lnc-C2orf54-1	lnc-C2orf54-1:3	ENSG00000233392.1	AC104809.4	LOC728763	NA	chr2:241888657-241908771	inter
CUST_5333_PI429285431	5.014705	P	5.469291	P	0.729719544538176	0	lncRNA	5271-2_{3001..3142}	"transcript_id ""ENST00000565106.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565106.1"" | genecode_v17"	chr15	 95027040	 95027181	+	ENSG00000260359.1	ENST00000565106.1	RP11-4F5.2	RP11-4F5.2-001	MCTP2	NA	chr15:95014040-95027181	inner
CUST_36269_PI429285431	0.9141781	A	1.4095021	A	0.70940234285337	0	lncRNA	37506-2_{3001..4525}	n344800|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_349|NULL|-1.3734400|-0.3255858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n344800|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_349|NULL|-1.3734400|-0.3255858	chr15	 52210580	 52212104	+	NA	NA	NA	NA	TMOD3	"hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-21.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90;hg19_refFlat_LEO1:range=chr15:52230353-522639425'pad=0,hg19_refFlat_LEO1:range=chr15:52230353-522639425'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60chr15:52197580-52204335"	NA	inter
LNCA_21_P0008505	0.91162854	A	0.8993226	A	1.00856631025114	0	lncRNA	TCONS_00022936	NA	NA	NA	NA	XLOC_010776	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010776), lincRNA [TCONS_00022936]"	chr14:27200325-27204466	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022936	TCONS_00022936	chr14	 27200325	 27204466	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24766_PI429285431	4.667192	P	4.2557993	P	1.32996907503233	0	lncRNA	26310-1_{1..349}	lnc-DSCAM-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DSCAM-1:3	chr21	 42519276	 42519624	-	lnc-DSCAM-1	lnc-DSCAM-1:3	ENSG00000226496.1	LINC00323	NA	NA	NA	inter
CUST_31240_PI429285431	6.6107593	P	6.951039	P	0.789888158820273	0	lncRNA	33029-1_{1..1667}	n337689|AK094377|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|71|NULL|-1.1994000|-0.1792642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337689|AK094377|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|71|NULL|-1.1994000|-0.1792642	chrX	 48916230	 48917896	+	NA	NA	NA	NA	WDR45	NA	chrX:48932092-48937504	inner
CUST_4045_PI429285431	1.9204588	A	0.9153722	A	2.00706397052059	0	lncRNA	4007-1_{1..572}	"transcript_id ""ENST00000532849.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532849.1"" | genecode_v17"	chr11	 87783274	 87783845	+	ENSG00000255516.1	ENST00000532849.1	RP11-164N3.1	RP11-164N3.1-001	NA	NA	NA	inter
CUST_28893_PI429285431	0.8933755	A	0.8902347	A	1.00217940812963	0	lncRNA	30609-1_{1..543}	n326316|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000085150|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000085150|-1.0986200|-0.5211021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326316|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000085150|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000085150|-1.0986200|-0.5211021	chr1	179142409	179142951	+	NA	NA	NA	NA	ABL2	"hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10chr1:179132409-179154925"	NA	inner
CUST_2396_PI429285431	0.8854461	A	0.8873299	A	0.998695101462726	0	lncRNA	2388-1_{1..425}	"transcript_id ""ENST00000518431.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518431.1"" | genecode_v17"	chr5	151575009	151575433	+	ENSG00000254226.1	ENST00000518431.1	CTB-12O2.1	CTB-12O2.1-002	NA	NA	NA	inter
CUST_2775_PI429285431	0.8855345	A	0.8855561	A	0.99998502813298	0	lncRNA	2758-1_{1..566}	"transcript_id ""ENST00000412563.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412563.1"" | genecode_v17"	chr7	 19393157	 19393722	+	ENSG00000223838.1	ENST00000412563.1	AC007091.1	AC007091.1-001	NA	NA	NA	inter
CUST_24824_PI429285431	0.90391654	A	0.90751064	A	0.997511860282136	0	lncRNA	26364-1_{1..539}	lnc-DGKH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DGKH-1:1	chr13	 42850619	 42851157	+	lnc-DGKH-1	lnc-DGKH-1:1	ENSG00000226176.1	AKAP11-IT1	AKAP11	NA	chr13:42846289-42861124	inner
LNCA_21_P0003681	0.9112958	A	0.8990482	A	1.00852552646302	0	lncRNA	TCONS_00008338	NA	NA	NA	NA	XLOC_003787	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003787), lincRNA [TCONS_00008338]"	chr4:175445565-175445624	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_00008338	TCONS_00008338	chr4	175445565	175445624	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23349_PI429285431	0.9062228	A	1.2683557	A	0.778013503225804	0	lncRNA	24918-1_{1..699}	lnc-ITPR2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITPR2-3:1	chr12	 26488753	 26489451	-	lnc-ITPR2-3	lnc-ITPR2-3:1	ENSG00000256234.1	RP11-283G6.4	ITPR2	NA	chr12:26488285-26498789	inner
CUST_31949_PI429285431	1.5474124	A	2.3220873	A	0.584520326507193	0	lncRNA	33675-1_{1..3000}	n338505|X87831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|902|NULL|18.0934000|-0.1505264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338505|X87831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|902|NULL|18.0934000|-0.1505264	chr1	208202290	208205289	-	NA	NA	NA	NA	PLXNA2	NA	chr1:208195587-208393658	inner
CUST_46002_PI429285431	1.307087	A	0.8924164	A	1.33299428951292	0	lncRNA	50288-1_{1..3000}	"gi|343790992|ref|NR_045013.1| Homo sapiens LIM domain only 3 (rhombotin-like 2) (LMO3), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|343790992|ref|NR_045013.1| Homo sapiens LIM domain only 3 (rhombotin-like 2) (LMO3), transcript variant 9, non-coding RNA"	Chr12	 16701306	 16704305	-	55885	NR_045013.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0012809	0.91169864	A	0.899549	A	1.00845704920087	0	lncRNA	ENST00000502345	NA	NA	NA	NA	XLOC_l2_011309	NA	ENST00000502345	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011309), lincRNA [TCONS_l2_00022027]"	chr4:150714839-150656579	hs|4q31.23	Agilent_HUMAN_G3V2	ENST00000502345	ENST00000502345	chr4	150656579	150714839	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11964_PI429285431	2.2032962	A	1.0553682	A	2.21595410224185	0	lncRNA	13542-1_{1..850}	lnc-C15orf2-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-C15orf2-2:6	chr15	 24758127	 24758976	+	lnc-C15orf2-2	lnc-C15orf2-2:6	XLOC_011181	linc-C15orf2-1	NA	NA	NA	inter
CUST_50554_PI429285431	2.459549	A	2.5719543	A	0.925044516413774	0	lncRNA	54246-1_{1..532}	hg19_lincRNAsTranscripts_TCONS_l2_00030891 range=chrY:9387051-9388485 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030891 range=chrY:9387051-9388485 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrY	  9387051	  9387582	+	NA	NA	NA	NA	FAM197Y1	NA	chrY:9378306-9384726	inter
CUST_13907_PI429285431	7.207948	P	7.314961	P	0.928508485559527	0	lncRNA	15554-1_{1..404}	lnc-EMX2-5:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EMX2-5:7	chr10	120007211	120007614	+	lnc-EMX2-5	lnc-EMX2-5:7	XLOC_008636	linc-NANOS1-3	NA	NA	NA	inter
CUST_50105_PI429285431	1.5829382	A	0.89562905	M	1.61027729888127	0	lncRNA	53835-1_{1..576}	hg19_lincRNAsTranscripts_TCONS_l2_00029297 range=chr9:44170438-44174635 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029297 range=chr9:44170438-44174635 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 44170438	 44171013	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42445_PI429285431	0.9066752	A	0.95472896	A	0.967240286094581	0	lncRNA	45171-1_{1..77}	ENST00000363181 ncrna:snoRNA chromosome:GRCh37:5:139906937:139907013:-1 gene:ENSG00000200051 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363181 ncrna:snoRNA chromosome:GRCh37:5:139906937:139907013:-1 gene:ENSG00000200051 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	139906937	139907013	-	ENSG00000200051	ENST00000363181	NA	NA	ANKHD1	NA	chr5:139896937-139917013	inner
CUST_2152_PI429285431	0.88943565	A	0.8884975	A	1.00065048750273	0	lncRNA	2143-1_{1..794}	"transcript_id ""ENST00000512599.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512599.1"" | genecode_v17"	chr5	 50154594	 50155387	-	ENSG00000249405.1	ENST00000512599.1	RP11-317O24.1	RP11-317O24.1-001	NA	NA	NA	inter
CUST_20922_PI429285431	0.9061715	A	1.0353081	A	0.914378508473345	0	lncRNA	22553-1_{1..285}	lnc-WNT11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WNT11-2:1	chr11	 75848639	 75848923	-	lnc-WNT11-2	lnc-WNT11-2:1	ENSG00000255421.1	CTD-2011F17.2	UVRAG	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70chr11:75838639-75855282"	NA	inner
CUST_44336_PI429285431	0.92011034	A	0.9202826	A	0.999880605594756	0	lncRNA	48964-2_{3001..5001}	"gi|217272881|ref|NR_024569.1| Homo sapiens uncharacterized LOC100130872 (LOC100130872), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|217272881|ref|NR_024569.1| Homo sapiens uncharacterized LOC100130872 (LOC100130872), non-coding RNA"	Chr4	  1192571	  1194571	-	100130872	NR_024569.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30"	NA	inter
LNCA_21_P0007039	6.4220233	P	6.266023	P	1.11419388250941	0	lncRNA	TCONS_00018649	NA	NA	NA	NA	XLOC_009000	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009000), lincRNA [TCONS_00018649]"	chr10:133730187-133730128	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_00018649	TCONS_00018649	chr10	133730128	133730187	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24364_PI429285431	8.296354	P	8.32108	P	0.983007275847347	0	lncRNA	25917-1_{1..782}	lnc-DALRD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DALRD3-1:1	chr3	 49026981	 49027762	-	lnc-DALRD3-1	lnc-DALRD3-1:1	ENSG00000223343.1	RP13-131K19.2	ARIH2	NA	chr3:49016981-49022974	inner
CUST_31875_PI429285431	2.037022	A	2.812417	A	0.584228644588021	0	lncRNA	33607-1_{1..2139}	n338428|BC042094|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|825|NULL|-0.8762230|-0.4305964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338428|BC042094|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|825|NULL|-0.8762230|-0.4305964	chr1	191844624	191846762	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26343_PI429285431	0.8998958	A	0.8990288	A	1.00060113921735	0	lncRNA	27850-1_{1..531}	lnc-ODF4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ODF4-2:1	chr17	  8276809	  8277339	+	lnc-ODF4-2	lnc-ODF4-2:1	ENSG00000265749.1	RP11-849F2.5	KRBA2	NA	chr17:8271973-8274858	inter
CUST_29423_PI429285431	2.5593216	A	1.5367606	A	2.03152201681526	0	lncRNA	31179-1_{1..380}	n332799|AF055459|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064654|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064654|1.2002100|-0.3072046	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332799|AF055459|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064654|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064654|1.2002100|-0.3072046	chr15	 52622651	 52623030	-	NA	NA	NA	NA	MYO5A	NA	chr15:52612651-52642561	inner
CUST_40493_PI429285431	0.917716	A	1.2535616	A	0.7923196019564	0	lncRNA	41258-1_{1..2092}	n409428|NR_033822_4|lncRNA|Homosapiens||RefGeneNoncode|NR_033822_4||-1.1501500|-0.3404536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409428|NR_033822_4|lncRNA|Homosapiens||RefGeneNoncode|NR_033822_4||-1.1501500|-0.3404536	chr6	  1942684	  1944775	+	NA	NA	NA	NA	GMDS	"hg19_refFlat_GMDS:range=chr6:1624404-21761775'pad=0,hg19_refFlat_GMDS:range=chr6:1624404-21761775'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_GMDS:range=chr6:1624404-22456565'pad=0,hg19_refFlat_GMDS:range=chr6:1624404-22456565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60chr6:1932684-1970520"	NA	inner
CUST_17672_PI429285431	1.4777981	A	0.90849394	A	1.48380772855826	0	lncRNA	19401-1_{1..385}	lnc-MPDZ-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MPDZ-2:2	chr9	 12139007	 12139391	-	lnc-MPDZ-2	lnc-MPDZ-2:2	XLOC_007648	linc-PTPRD-6	NA	NA	NA	inter
CUST_15026_PI429285431	1.4025763	A	1.0727437	A	1.25686752815419	0	lncRNA	16689-1_{1..273}	lnc-LRRC33-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC33-1:1	chr3	196420022	196420294	+	lnc-LRRC33-1	lnc-LRRC33-1:1	XLOC_003007	linc-PIGX	NA	NA	NA	inter
LNCA_21_P0010929	0.92141277	A	0.90937173	A	1.00838113966316	0	lncRNA	ENST00000435147	NA	NA	NA	NA	XLOC_l2_001772	NA	ENST00000435147	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001772), lincRNA [TCONS_l2_00004048]"	chr10:124492474-124493887	hs|10q26.13	Agilent_HUMAN_G3V2	ENST00000435147	ENST00000435147	chr10	124492474	124493887	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14312_PI429285431	0.89921284	A	0.897054	A	1.00149751401523	0	lncRNA	15970-2_{3001..5914}	lnc-ADAT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAT1-1:1	chr16	 75619487	 75622400	-	lnc-ADAT1-1	lnc-ADAT1-1:1	XLOC_012011	linc-TMEM231	ADAT1	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20chr16:75632247-75632358"	NA	inter
CUST_36098_PI429285431	2.1665912	A	2.6229482	A	0.728824316932521	0	lncRNA	37394-2_{3001..6000}	n344679|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_228|NULL|-1.3112000|-0.2416377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344679|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_228|NULL|-1.3112000|-0.2416377	chr17	 70399859	 70402858	-	NA	NA	NA	NA	NA	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70"	NA	inter
CUST_48680_PI429285431	1.0435225	A	0.93300164	A	1.07961794346855	0	lncRNA	52522-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00013854 range=chr2:102578558-102603782 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013854 range=chr2:102578558-102603782 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	102578558	102581557	+	NA	NA	NA	NA	IL1R2	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60chr2:102608306-102613782"	NA	inter
CUST_13332_PI429285431	3.0538378	A	2.722814	A	1.25790572321342	0	lncRNA	14968-1_{1..250}	lnc-JAM2-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JAM2-8:1	chr21	 25231273	 25231522	+	lnc-JAM2-8	lnc-JAM2-8:1	XLOC_013884	linc-JAM2-6	NA	NA	NA	inter
CUST_12442_PI429285431	2.268477	A	2.4682221	A	0.870704388558391	0	lncRNA	14055-1_{1..800}	lnc-EIF2AK4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2AK4-2:2	chr15	 40357422	 40358221	+	lnc-EIF2AK4-2	lnc-EIF2AK4-2:2	XLOC_011219	linc-BUB1B	NA	NA	NA	inter
CUST_24501_PI429285431	3.2506762	P	3.2107294	P	1.02807591521562	0	lncRNA	26052-1_{1..938}	lnc-F13A1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-F13A1-1:3	chr6	  6587278	  6588215	-	lnc-F13A1-1	lnc-F13A1-1:3	ENSG00000216863.4	LY86-AS1	LY86	NA	chr6:6577278-6597426	inter
LNCA_21_P0011316	4.6644845	P	4.761158	P	0.935186818322102	0	lncRNA	TCONS_l2_00008583	NA	NA	NA	NA	XLOC_l2_004631	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004631), lincRNA [TCONS_l2_00008583]"	chr15:40619029-40619088	hs|15q15.1	Agilent_HUMAN_G3V2	TCONS_l2_00008583	TCONS_l2_00008583	chr15	 40619029	 40619088	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8733_PI429285431	1.4654405	A	1.3042969	A	1.11817314383646	0	lncRNA	10276-1_{1..638}	lnc-TCF24-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-TCF24-2:2	chr8	 67837672	 67838309	-	lnc-TCF24-2	lnc-TCF24-2:2	ENSG00000245910	SNHG6	C8orf45	NA	chr8:67827672-67834283	inter
CUST_50453_PI429285431	7.22011	P	7.462275	P	0.845475585409742	0	lncRNA	54159-1_{1..1696}	hg19_lincRNAsTranscripts_TCONS_l2_00030522 range=chrX:70882856-70888878 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030522 range=chrX:70882856-70888878 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 70882856	 70884551	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47369_PI429285431	0.9075642	A	0.90224046	A	1.00369695230312	0	lncRNA	51418-1_{1..2946}	"gi|336455062|ref|NR_038880.1| Homo sapiens GCFC1 antisense RNA 1 (GCFC1-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336455062|ref|NR_038880.1| Homo sapiens GCFC1 antisense RNA 1 (GCFC1-AS1), transcript variant 2, non-coding RNA"	Chr21	 34100425	 34103370	+	100506215	NR_038880.1	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30"	NA	inter
CUST_17859_PI429285431	0.9095677	A	0.90785897	A	1.00118510306215	0	lncRNA	19595-1_{1..730}	lnc-CTC-236F12.4.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTC-236F12.4.1-2:2	chr5	 55812094	 55812823	-	lnc-CTC-236F12.4.1-2	lnc-CTC-236F12.4.1-2:2	XLOC_004830	linc-ANKRD55-4	NA	NA	NA	inter
CUST_31503_PI429285431	7.398694	P	7.5158935	P	0.921975615669837	0	lncRNA	33265-1_{1..3000}	n337985|D87449|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|371|NULL|6.2108900|-0.3124598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337985|D87449|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|371|NULL|6.2108900|-0.3124598	chr1	 67465064	 67468063	-	NA	NA	NA	NA	SLC35D1	NA	chr1:67465015-67520080	inner
CUST_8500_PI429285431	2.68107	A	0.9222093	A	3.38430759744338	0	lncRNA	10063-2_{3001..4083}	lnc-MAP1LC3B-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MAP1LC3B-6:1	chr16	 87099358	 87100440	+	lnc-MAP1LC3B-6	lnc-MAP1LC3B-6:1	ENSG00000232190	AC106745.1	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
CUST_39920_PI429285431	0.92002726	A	0.92488587	A	0.99663793262531	0	lncRNA	40798-1_{1..2863}	n406782|NR_024233|lncRNA|Homosapiens||RefGeneNoncode|NR_024233||0.6257550|-0.2675137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n406782|NR_024233|lncRNA|Homosapiens||RefGeneNoncode|NR_024233||0.6257550|-0.2675137	chr11	129872518	129875380	+	NA	NA	NA	NA	PRDM10	"hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20chr11:129862518-129872730"	NA	inner
CUST_21855_PI429285431	0.9231516	A	0.922263	A	1.00061612030884	0	lncRNA	23465-1_{1..558}	lnc-DLX2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DLX2-2:1	chr2	173292948	173293505	-	lnc-DLX2-2	lnc-DLX2-2:1	ENSG00000226963.1	AC078883.4	ITGA6	"hg19_refFlat_ITGA6:range=chr2:173292517-1733689805'pad=0,hg19_refFlat_ITGA6:range=chr2:173292517-1733689805'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_ITGA6:range=chr2:173292517-1733666075'pad=0,hg19_refFlat_ITGA6:range=chr2:173292517-1733666075'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20chr2:173292314-173303331"	NA	inner
CUST_12186_PI429285431	8.602847	P	9.059577	P	0.728635908209422	0	lncRNA	13786-1_{1..368}	lnc-ADD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADD3-1:1	chr10	110778428	110778795	+	lnc-ADD3-1	lnc-ADD3-1:1	XLOC_008610	linc-ADD3-1	NA	NA	NA	inter
CUST_8365_PI429285431	3.8137946	P	3.7601998	P	1.03784773632903	0	lncRNA	9944-2_{3001..4651}	lnc-SETD4-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SETD4-3:4	chr21	 37523268	 37524918	-	lnc-SETD4-3	lnc-SETD4-3:4	ENSG00000236830	AP000689.8	CBR3	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CBR3:range=chr21:37507491-375188105'pad=0,hg19_refFlat_CBR3:range=chr21:37507491-375188105'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50chr21:37510268-37518860"	NA	inter
CUST_11924_PI429285431	6.956297	P	7.027906	P	0.951576138073329	0	lncRNA	13505-1_{1..299}	lnc-GPR26-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR26-4:5	chr10	125208869	125209167	+	lnc-GPR26-4	lnc-GPR26-4:5	XLOC_008652	linc-GPR26-3	NA	NA	NA	inter
CUST_45829_PI429285431	11.333801	P	11.547615	P	0.86225470436342	0	lncRNA	50163-1_{1..2877}	"gi|295842512|ref|NR_033650.1| Homo sapiens splicing factor 1 (SF1), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|295842512|ref|NR_033650.1| Homo sapiens splicing factor 1 (SF1), transcript variant 8, non-coding RNA"	Chr11	 64532076	 64534952	-	7536	NR_033650.1	NA	NA	NA	NA	NA	inter
CUST_40198_PI429285431	7.0596194	P	7.3571205	P	0.813660522350153	0	lncRNA	41030-1_{1..3000}	n408022|NR_027782|lncRNA|Homosapiens||RefGeneNoncode|NR_027782||0.5056040|-0.2634745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408022|NR_027782|lncRNA|Homosapiens||RefGeneNoncode|NR_027782||0.5056040|-0.2634745	chr17	   128327	   131326	-	NA	NA	NA	NA	RPH3AL	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80chr17:118327-193214"	NA	inner
CUST_26018_PI429285431	3.4976664	P	3.0422556	A	1.37117318391659	0	lncRNA	27537-1_{1..742}	lnc-SUPT6H-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SUPT6H-3:1	chr17	 26936251	 26936992	+	lnc-SUPT6H-3	lnc-SUPT6H-3:1	ENSG00000265287.1	RP11-192H23.6	KIAA0100	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40chr17:26941458-26946748"	NA	inner
CUST_44773_PI429285431	1.0652597	A	0.9180214	A	1.10744749420262	0	lncRNA	49313-1_{1..3000}	"gi|374429562|ref|NR_046241.1| Homo sapiens ribosomal protein S16 pseudogene 5 (RPS16P5), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374429562|ref|NR_046241.1| Homo sapiens ribosomal protein S16 pseudogene 5 (RPS16P5), non-coding RNA"	Chr6	 53199258	 53202257	-	647190	NR_046241.1	NA	NA	NA	NA	NA	inter
CUST_24584_PI429285431	5.187447	P	5.5716467	P	0.76620391367425	0	lncRNA	26133-1_{1..547}	lnc-AC007405.2.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC007405.2.1-3:1	chr2	171674228	171674774	-	lnc-AC007405.2.1-3	lnc-AC007405.2.1-3:1	ENSG00000235934.1	AC007405.8	GAD1	NA	chr2:171673200-171684547	inner
CUST_18457_PI429285431	5.70501	P	5.5970993	P	1.07766643753543	0	lncRNA	20181-1_{1..3000}	lnc-EIF3M-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-EIF3M-2:2	chr11	 32459391	 32462390	+	lnc-EIF3M-2	lnc-EIF3M-2:2	ENSG00000183242	WT1-AS	WT1	NA	chr11:32449391-32457081	inter
CUST_15331_PI429285431	0.889956	A	0.89564925	A	0.996061516066603	0	lncRNA	17010-1_{1..308}	lnc-AC091801.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC091801.1.1-1:2	chr7	  3197771	  3198078	-	lnc-AC091801.1.1-1	lnc-AC091801.1.1-1:2	XLOC_006339	linc-CARD11-3	NA	NA	NA	inter
CUST_17284_PI429285431	2.636264	A	1.9571208	A	1.60118854528063	0	lncRNA	19002-1_{1..1821}	lnc-MRFAP1L1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRFAP1L1-1:2	chr4	  6692026	  6693846	-	lnc-MRFAP1L1-1	lnc-MRFAP1L1-1:2	XLOC_003871	linc-PPP2R2C-2	S100P	NA	chr4:6695566-6698897	inter
CUST_5776_PI429285431	2.089254	A	1.6779937	A	1.32984702579756	0	lncRNA	5699-1_{1..3000}	"transcript_id ""ENST00000577309.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577309.1"" | genecode_v17"	chr17	 21359825	 21362824	-	ENSG00000265043.1	ENST00000577309.1	RP11-728E14.3	RP11-728E14.3-001	NA	"hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.60;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50"	NA	inter
CUST_28785_PI429285431	5.79331	P	5.863711	P	0.952373247184342	0	lncRNA	30492-1_{1..311}	n326191|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092235|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092235|-1.2802400|-0.2249684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326191|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092235|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092235|-1.2802400|-0.2249684	chr1	229026009	229026319	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31090_PI429285431	3.3571265	P	2.9871564	A	1.29232604677249	0	lncRNA	32881-1_{1..381}	n337369|DQ655919|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393032|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393032|-0.9210700|-0.1119605	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337369|DQ655919|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393032|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393032|-0.9210700|-0.1119605	chrX	123094062	123094442	-	NA	NA	NA	NA	STAG2	"hg19_refFlat_STAG2:range=chrX:123156478-1232344475'pad=0,hg19_refFlat_STAG2:range=chrX:123156478-1232344475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80chrX:123094475-123174898"	NA	inner
CUST_27508_PI429285431	6.5339065	P	6.5299153	P	1.00277031928913	0	lncRNA	29079-1_{1..770}	n324687|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320634|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320634|0.2395160|-0.2654371	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324687|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320634|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320634|0.2395160|-0.2654371	chr22	 26183207	 26183976	-	NA	NA	NA	NA	MYO18B	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.21;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00chr22:26173207-26196021"	NA	inner
CUST_20741_PI429285431	2.4805245	A	0.9223564	A	2.94479682630468	0	lncRNA	22375-1_{1..2424}	lnc-STX6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STX6-2:1	chr1	180945254	180947677	-	lnc-STX6-2	lnc-STX6-2:1	ENSG00000243155.1	RP11-46A10.5	STX6	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_KIAA1614:range=chr1:180882380-1809147245'pad=0,hg19_refFlat_KIAA1614:range=chr1:180882380-1809147245'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00chr1:180942175-180955618"	NA	inner
CUST_13204_PI429285431	1.5856036	A	0.9136603	A	1.59321757558757	0	lncRNA	14832-1_{1..356}	lnc-OSTF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OSTF1-1:1	chr9	 77794469	 77794824	+	lnc-OSTF1-1	lnc-OSTF1-1:1	XLOC_007412	linc-PCSK5-2	NA	NA	NA	inter
CUST_36943_PI429285431	1.0664377	A	0.91923213	A	1.10742237015055	0	lncRNA	38098-1_{1..757}	n345414|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_963|NULL|-1.3562500|-0.1631431	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345414|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_963|NULL|-1.3562500|-0.1631431	chr22	 38731305	 38732061	+	NA	NA	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60"	NA	inter
CUST_50481_PI429285431	1.4785063	A	1.4043483	A	1.05274644229641	0	lncRNA	54179-1_{1..486}	hg19_lincRNAsTranscripts_TCONS_l2_00030278 range=chrX:100700986-100754221 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030278 range=chrX:100700986-100754221 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	100700986	100701471	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_39855_PI429285431	7.641573	P	8.509621	P	0.547887654115026	0	lncRNA	40754-1_{1..2164}	n406498|NR_024005|lncRNA|Homosapiens||RefGeneNoncode|NR_024005||1.0679800|-0.1534835	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,UCSC,"	>n406498|NR_024005|lncRNA|Homosapiens||RefGeneNoncode|NR_024005||1.0679800|-0.1534835	chr2	114356604	114358767	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37914_PI429285431	6.4633236	P	6.2640433	P	1.14812546051175	0	lncRNA	39003-1_{1..350}	n346454|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2004|NULL|-1.3258600|-0.1965401	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346454|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2004|NULL|-1.3258600|-0.1965401	chrX	153106665	153107014	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYCS:range=chr7:25163320-251637385'pad=0,hg19_refFlat_CYCS:range=chr7:25163320-251637385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10"	NA	inter
CUST_13375_PI429285431	2.294625	A	2.5088053	A	0.862035805846203	0	lncRNA	15010-1_{1..747}	lnc-RP11-327F22.5.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RP11-327F22.5.1-1:1	chr16	 50841329	 50842075	+	lnc-RP11-327F22.5.1-1	lnc-RP11-327F22.5.1-1:1	XLOC_011717	linc-CHD9-11	CYLD	NA	chr16:50831329-50835846	inter
CUST_17872_PI429285431	1.5305041	A	1.0576204	A	1.38788083324459	0	lncRNA	19609-1_{1..469}	lnc-ADRB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADRB1-1:1	chr10	115802107	115802575	+	lnc-ADRB1-1	lnc-ADRB1-1:1	XLOC_008625	linc-ADRB1-1	ADRB1	NA	chr10:115803806-115806667	inter
CUST_42059_PI429285431	0.9144684	A	0.9202068	A	0.996030344216372	0	lncRNA	43967-1_{1..83}	ENST00000365739 ncrna:miRNA chromosome:GRCh37:1:176998499:176998581:-1 gene:ENSG00000202609 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365739 ncrna:miRNA chromosome:GRCh37:1:176998499:176998581:-1 gene:ENSG00000202609 gene_biotype:miRNA transcript_biotype:miRNA	chr1	176998499	176998581	-	ENSG00000202609	ENST00000365739	NA	NA	ASTN1	NA	chr1:176988499-177008581	inner
LNCA_21_P0013893	3.9428036	P	4.157546	P	0.861700006574547	0	lncRNA	TCONS_l2_00030929	NA	NA	NA	NA	XLOC_l2_015938	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015938), lincRNA [TCONS_l2_00030929]"	chrY:10036241-10036182	hs|Yp11.2	Agilent_HUMAN_G3V2	TCONS_l2_00030929	TCONS_l2_00030929	chrY	 10036182	 10036241	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13382_PI429285431	1.0477798	A	1.0000503	A	1.03363691496829	0	lncRNA	15017-1_{1..877}	lnc-ZMAT4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ZMAT4-3:1	chr8	 40210463	 40211339	-	lnc-ZMAT4-3	lnc-ZMAT4-3:1	XLOC_007065	linc-ADAM2-1	NA	NA	NA	inter
CUST_23592_PI429285431	3.6516201	P	4.5240245	P	0.546235733449624	0	lncRNA	25159-1_{1..472}	lnc-PPP2R2D-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP2R2D-4:1	chr10	132893651	132894122	+	lnc-PPP2R2D-4	lnc-PPP2R2D-4:1	ENSG00000230098.1	RP11-462G8.3	TCERG1L	NA	chr10:132890655-132904040	inner
CUST_6860_PI429285431	0.8794484	A	1.1267068	A	0.842495917192427	0	lncRNA	6809-1_{1..694}	"transcript_id ""ENST00000584840.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584840.1"" | genecode_v17"	chr21	 38580804	 38581497	+	ENSG00000230366.5	ENST00000584840.1	DSCR9	DSCR9-004	TTC3	NA	chr21:38570804-38575408	inter
CUST_38970_PI429285431	1.0672032	A	0.9206507	A	1.10692118269292	0	lncRNA	39954-1_{1..2551}	n385192|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ttw.2||10.0820000|-0.2336063	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385192|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ttw.2||10.0820000|-0.2336063	chr7	 64601602	 64604152	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5698_PI429285431	8.498027	P	8.60486	P	0.928624339533725	0	lncRNA	5622-1_{1..754}	"transcript_id ""ENST00000576749.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000576749.1"" | genecode_v17"	chr17	  1615265	  1616018	-	ENSG00000186594.6	ENST00000576749.1	MIR22HG	MIR22HG-010	WDR81	NA	chr17:1619817-1629506	inter
LNCA_21_P0014176	1.0868161	A	0.9104911	A	1.13000174459477	0	lncRNA	XR_108717	XR_108717	XR_108717	NA	NA	LOC100506534	uncharacterized LOC100506534	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506534 (LOC100506534), miscRNA [XR_108717]"	chr7:157296224-157296283	hs|7q36.3	Agilent_HUMAN_G3V2	XR_108717	XR_108717	chr7	157296224	157296283	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12430_PI429285431	2.999305	P	3.5360723	P	0.689313750623559	0	lncRNA	14043-1_{1..610}	lnc-GAS6-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GAS6-4:1	chr13	114448115	114448724	-	lnc-GAS6-4	lnc-GAS6-4:1	XLOC_010739	linc-ATP4B-2	GRK1	NA	chr13:114438115-114438637	inter
CUST_1112_PI429285431	0.9038958	A	0.8984051	A	1.00381311471822	0	lncRNA	1101-1_{1..765}	"transcript_id ""ENST00000420472.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420472.1"" | genecode_v17"	chr2	145780754	145781518	+	ENSG00000226674.3	ENST00000420472.1	AC074093.1	AC074093.1-009	NA	NA	NA	inter
CUST_19851_PI429285431	12.215027	P	12.33115	P	0.922663825655375	0	lncRNA	21508-1_{1..560}	lnc-CCDC64B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC64B-1:3	chr16	  3108997	  3109556	-	lnc-CCDC64B-1	lnc-CCDC64B-1:3	ENSG00000261971.1	RP11-473M20.7	IL32	"hg19_refFlat_MMP25:range=chr16:3096919-31090995'pad=0,hg19_refFlat_MMP25:range=chr16:3096919-31090995'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.80chr16:3115313-3119309"	NA	inner
LNCA_21_P0013529	0.9178723	A	0.906493	A	1.00791871822039	0	lncRNA	TCONS_l2_00028422	NA	NA	NA	NA	XLOC_l2_014664	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014664), lincRNA [TCONS_l2_00028422]"	chr8:138835328-138835269	hs|8q24.23	Agilent_HUMAN_G3V2	TCONS_l2_00028422	TCONS_l2_00028422	chr8	138835269	138835328	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24799_PI429285431	2.448859	A	2.5980458	A	0.901758611214124	0	lncRNA	26342-1_{1..810}	lnc-TMEM109-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM109-1:1	chr11	 60676899	 60677708	+	lnc-TMEM109-1	lnc-TMEM109-1:1	ENSG00000257052.1	RP11-881M11.2	TMEM109	NA	chr11:60681371-60687214	inter
LNCA_21_P0006508	0.9166893	A	1.6807549	A	0.588834619610656	0	lncRNA	TCONS_00017217	NA	NA	NA	NA	XLOC_008029	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008029), lincRNA [TCONS_00017217]"	chrX:100918737-100918796	hs|Xq22.1	Agilent_HUMAN_G3V2	TCONS_00017217	TCONS_00017217	chrX	100918737	100918796	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26113_PI429285431	0.9167905	A	0.9139429	A	1.00197575514851	0	lncRNA	27624-1_{1..523}	lnc-TMBIM4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMBIM4-1:1	chr12	 66651039	 66651561	-	lnc-TMBIM4-1	lnc-TMBIM4-1:1	ENSG00000256072.1	RP11-335I12.2	IRAK3	NA	chr12:66641039-66648402	inter
LNCA_21_P0001543	0.9156371	A	1.5454038	A	0.646280917755714	0	lncRNA	TCONS_00001577	NA	NA	NA	NA	XLOC_000913	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000913), lincRNA [TCONS_00001577]"	chr1:90752819-90752760	hs|1p22.2	Agilent_HUMAN_G3V2	TCONS_00001577	TCONS_00001577	chr1	 90752760	 90752819	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40127_PI429285431	4.4127975	P	4.174979	P	1.17920823120681	0	lncRNA	40967-2_{3001..5010}	n407685|NR_027154|lncRNA|Homosapiens||RefGeneNoncode|NR_027154||12.7520000|-0.3053844	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407685|NR_027154|lncRNA|Homosapiens||RefGeneNoncode|NR_027154||12.7520000|-0.3053844	chr16	 22451328	 22453337	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10590_PI429285431	3.9692252	P	4.3991137	P	0.742319153909394	0	lncRNA	12120-1_{1..419}	lnc-ASMT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASMT-1:1	chrX	  1781054	  1781472	+	lnc-ASMT-1	lnc-ASMT-1:1	XLOC_007914	linc-CD99-9	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.29;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-9.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-32.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.64;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_12218_PI429285431	5.374517	P	4.875235	P	1.41350991213682	0	lncRNA	13821-1_{1..393}	lnc-MSRB3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MSRB3-2:1	chr12	 65999808	 66000200	+	lnc-MSRB3-2	lnc-MSRB3-2:1	XLOC_009788	linc-HMGA2	NA	NA	NA	inter
CUST_6761_PI429285431	0.9070028	A	1.2650695	A	0.780209407983091	0	lncRNA	6709-1_{1..446}	"transcript_id ""ENST00000449746.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449746.1"" | genecode_v17"	chr21	 16439391	 16439836	+	ENSG00000236471.1	ENST00000449746.1	AF127577.12	AF127577.12-001	NRIP1	NA	chr21:16429391-16437126	inter
CUST_23224_PI429285431	0.8997445	A	0.98340726	A	0.943658811926115	0	lncRNA	24796-1_{1..440}	lnc-EGR2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EGR2-2:1	chr10	 65086477	 65086916	-	lnc-EGR2-2	lnc-EGR2-2:1	ENSG00000226095.1	RP11-444I9.4	JMJD1C	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60chr10:65076477-65096670"	NA	inner
CUST_14270_PI429285431	0.91968894	A	0.9204001	A	0.999507182925319	0	lncRNA	15928-2_{3001..4528}	lnc-ITPR3-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITPR3-1:8	chr6	 33885503	 33887030	+	lnc-ITPR3-1	lnc-ITPR3-1:8	XLOC_005263	linc-HMGA1-2	NA	NA	NA	inter
CUST_45014_PI429285431	0.902376	A	0.89780504	A	1.00317337255617	0	lncRNA	49516-1_{1..2282}	"gi|70608212|ref|NR_002147.2| Homo sapiens myosin, heavy chain 16 pseudogene (MYH16), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|70608212|ref|NR_002147.2| Homo sapiens myosin, heavy chain 16 pseudogene (MYH16), non-coding RNA"	NA	NA	NA	NA	NA	NR_002147.2	NA	NA	NA	NA	NA	Unknown
CUST_38616_PI429285431	1.07551	A	1.0442262	A	1.02192109032388	0	lncRNA	39620-1_{1..560}	n383752|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ttu.1||-1.1453300|-0.2212421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383752|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ttu.1||-1.1453300|-0.2212421	chr2	134023813	134024372	+	NA	NA	NA	NA	NCKAP5	NA	chr2:134013813-134036613	inner
CUST_4813_PI429285431	0.8950418	A	1.0339143	A	0.908228680033797	0	lncRNA	4757-1_{1..534}	"transcript_id ""ENST00000556019.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556019.2"" | genecode_v17"	chr14	 50508361	 50508894	-	ENSG00000258391.2	ENST00000556019.2	RP11-58E21.5	RP11-58E21.5-001	C14orf183	NA	chr14:50550369-50559361	inner
CUST_35563_PI429285431	2.1623523	A	2.4542103	A	0.816849387106039	0	lncRNA	36977-1_{1..744}	n342693|AK057925|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5195|NULL|-0.9966000|-0.3263794	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342693|AK057925|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5195|NULL|-0.9966000|-0.3263794	chr5	133737773	133738516	+	NA	NA	NA	NA	UBE2B	"hg19_refFlat_CDKN2AIPNL:range=chr5:133738606-1337475455'pad=0,hg19_refFlat_CDKN2AIPNL:range=chr5:133738606-1337475455'pad=0 3'pad=0 strand=- repeatMasking=none,-102.20chr5:133727773-133727799"	NA	inner
CUST_27956_PI429285431	0.90396243	A	0.9058851	A	0.998668194351693	0	lncRNA	29560-1_{1..607}	n325204|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329329|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329329|-0.8639420|-0.4147879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325204|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329329|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329329|-0.8639420|-0.4147879	chr2	104790462	104791068	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80"	NA	inter
CUST_27114_PI429285431	0.89249885	A	0.8875297	A	1.00345029090995	0	lncRNA	28647-1_{1..1124}	n324227|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326472|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326472|-1.3012700|-0.4686374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324227|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326472|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326472|-1.3012700|-0.4686374	chr7	 20302855	 20303978	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20752_PI429285431	6.903929	P	7.1375685	P	0.850486652743677	0	lncRNA	22386-1_{1..572}	lnc-SNX33-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNX33-1:1	chr15	 75931386	 75931957	+	lnc-SNX33-1	lnc-SNX33-1:1	ENSG00000260206.1	CTD-2026K11.2	SNX33	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20chr15:75941348-75941580"	NA	inner
CUST_30663_PI429285431	2.687105	A	2.0487666	A	1.55653541280693	0	lncRNA	32445-1_{1..348}	n336103|X89068|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324343|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324343|1.4102200|-0.4300164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336103|X89068|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324343|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324343|1.4102200|-0.4300164	chr4	122824010	122824357	-	NA	NA	NA	NA	TRPC3	NA	chr4:122814010-122835619	inner
CUST_29846_PI429285431	6.502243	P	5.638755	P	1.8194318329403	0	lncRNA	31609-1_{1..334}	n333741|L06889|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191751|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191751|1.6552100|-0.4095328	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333741|L06889|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191751|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191751|1.6552100|-0.4095328	chr7	142008412	142008745	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15528_PI429285431	3.9966784	P	3.9097188	P	1.06212944311295	0	lncRNA	17213-1_{1..643}	lnc-ZNF37A-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF37A-3:3	chr10	 38724058	 38724700	+	lnc-ZNF37A-3	lnc-ZNF37A-3:3	XLOC_008461	linc-BMS1-4	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90"	NA	inter
CUST_22445_PI429285431	0.89583755	A	0.8958575	A	0.999986171809358	0	lncRNA	24032-1_{1..599}	lnc-ZSCAN10-3:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZSCAN10-3:11	chr16	  3174488	  3175086	-	lnc-ZSCAN10-3	lnc-ZSCAN10-3:11	ENSG00000263072.1	RP11-473M20.14	ZNF205	"hg19_refFlat_ZNF324B:range=chr19:58965069-589679465'pad=0,hg19_refFlat_ZNF324B:range=chr19:58965069-589679465'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF205:range=chr16:3163432-31703265'pad=0,hg19_refFlat_ZNF205:range=chr16:3163432-31703265'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20chr16:3164488-3170518"	NA	inter
CUST_17944_PI429285431	11.238594	P	11.414847	P	0.884998552104878	0	lncRNA	19675-1_{1..535}	lnc-TAOK3-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TAOK3-4:2	chr12	119212291	119212825	-	lnc-TAOK3-4	lnc-TAOK3-4:2	XLOC_010215	linc-TAOK3-4	NA	NA	NA	inter
CUST_28912_PI429285431	3.0632374	P	2.666172	A	1.3168266148607	0	lncRNA	30629-1_{1..427}	n326337|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086103|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086103|-0.9465200|-0.2918491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326337|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086103|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086103|-0.9465200|-0.2918491	chr1	167690252	167690678	-	NA	NA	NA	NA	MPZL1	NA	chr1:167691187-167706283	inner
CUST_11132_PI429285431	0.9253133	A	1.0246352	A	0.933471641678594	0	lncRNA	12690-1_{1..363}	lnc-C20orf3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf3-2:1	chr20	 24860976	 24861338	-	lnc-C20orf3-2	lnc-C20orf3-2:1	XLOC_013702	linc-GGTLC1-8	NA	NA	NA	inter
CUST_10439_PI429285431	5.099683	P	5.101292	P	0.99888534787318	0	lncRNA	11966-2_{3001..5241}	lnc-ARRDC3-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARRDC3-1:6	chr5	 90612897	 90615137	-	lnc-ARRDC3-1	lnc-ARRDC3-1:6	XLOC_004924	linc-LYSMD3-2	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.61;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40"	NA	inter
CUST_46292_PI429285431	10.2078285	P	10.49877	P	0.817368471380429	0	lncRNA	50526-1_{1..3000}	"gi|254553338|ref|NR_028100.1| Homo sapiens DDB1 and CUL4 associated factor 11 (DCAF11), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254553338|ref|NR_028100.1| Homo sapiens DDB1 and CUL4 associated factor 11 (DCAF11), transcript variant 5, non-coding RNA"	Chr14	 24584492	 24587491	+	80344	NR_028100.1	NA	NA	NA	"hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50"	NA	inter
CUST_34985_PI429285431	0.8937918	A	0.8898567	A	1.00273132676502	0	lncRNA	36401-1_{1..1859}	n341911|AK056127|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4392|NULL|-1.1622000|-0.3091079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341911|AK056127|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4392|NULL|-1.1622000|-0.3091079	chr12	 48583131	 48584989	+	NA	NA	NA	NA	C12orf68	NA	chr12:48577366-48579709	inter
LNCA_21_P0009975	2.2644603	A	3.5767093	P	0.402692637334928	0	lncRNA	TCONS_00028218	NA	NA	NA	NA	XLOC_013564	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013564), lincRNA [TCONS_00028218]"	chr20:49759203-49759262	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028218	TCONS_00028218	chr20	 49759203	 49759262	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26827_PI429285431	0.91090244	A	0.9133042	A	0.998336611793818	0	lncRNA	28342-1_{1..756}	n323899|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056151|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056151|0.2359240|-0.3697512	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323899|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056151|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056151|0.2359240|-0.3697512	chrX	 28499569	 28500324	-	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.10"	NA	inter
CUST_4061_PI429285431	3.0144267	A	1.9601539	A	2.07667118286044	0	lncRNA	4023-1_{1..734}	"transcript_id ""ENST00000529088.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000529088.1"" | genecode_v17"	chr11	 97093644	 97094377	-	ENSG00000255039.1	ENST00000529088.1	RP11-882G5.1	RP11-882G5.1-001	NA	NA	NA	inter
LNCA_21_P0009850	4.7142887	P	4.740984	P	0.981666371808754	0	lncRNA	ENST00000435301	NA	NA	NA	NA	XLOC_013557	NA	ENST00000435301	NA	NA	"BROAD Institute lincRNA (XLOC_013557), lincRNA [TCONS_00027944]"	chr20:48780557-48780616	hs|20q13.13	Agilent_HUMAN_G3V2	ENST00000435301	ENST00000435301	chr20	 48780557	 48780616	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34002_PI429285431	4.3789897	P	5.023725	P	0.639610133019934	0	lncRNA	35539-1_{1..2052}	n340816|AK056229|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3280|NULL|3.1394900|-0.2410483	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340816|AK056229|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3280|NULL|3.1394900|-0.2410483	chr17	 70067183	 70069234	-	NA	NA	NA	NA	SOX9	NA	chr17:70117161-70122561	inner
CUST_6370_PI429285431	3.9010057	P	3.8430645	P	1.04097916957504	0	lncRNA	6296-1_{1..1041}	"transcript_id ""ENST00000601885.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601885.1"" | genecode_v17"	chr19	 17516633	 17517673	+	ENSG00000269640.1	ENST00000601885.1	CTD-2521M24.9	CTD-2521M24.9-010	FAM125A	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-25.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chr19:17527840-17535763"	NA	inter
CUST_11902_PI429285431	4.344833	P	3.8816824	P	1.37854904939543	0	lncRNA	13484-1_{1..702}	lnc-MPEG1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MPEG1-2:6	chr11	 58903530	 58904231	-	lnc-MPEG1-2	lnc-MPEG1-2:6	XLOC_009445	linc-GLYATL2	FAM111B	NA	chr11:58893530-58894888	inter
CUST_26027_PI429285431	8.68265	P	8.695287	P	0.991278949990352	0	lncRNA	27546-1_{1..344}	lnc-PCDH12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PCDH12-1:1	chr5	141362180	141362523	-	lnc-PCDH12-1	lnc-PCDH12-1:1	ENSG00000254099.1	AC005740.5	RNF14	NA	chr5:141352180-141369856	inner
CUST_18579_PI429285431	3.4659574	P	2.3910546	A	2.10658013859629	0	lncRNA	20287-1_{1..3000}	lnc-TKT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TKT-1:1	chr3	 53381410	 53384409	-	lnc-TKT-1	lnc-TKT-1:1	ENSG00000162290	DCP1A	DCP1A	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90chr3:53371410-53381654"	NA	inner
CUST_41218_PI429285431	1.0502682	A	0.89092416	A	1.11677924897561	0	lncRNA	42104-1_{1..75}	ENST00000582720 ncrna:miRNA chromosome:GRCh37:8:92217713:92217787:1 gene:ENSG00000266194 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582720 ncrna:miRNA chromosome:GRCh37:8:92217713:92217787:1 gene:ENSG00000266194 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 92217713	 92217787	+	ENSG00000266194	ENST00000582720	NA	NA	LRRC69	NA	chr8:92207713-92227787	inner
CUST_44506_PI429285431	0.91688216	A	0.91639936	A	1.00033470746082	0	lncRNA	49105-1_{1..2305}	"gi|323668266|ref|NR_037896.1| Homo sapiens uncharacterized LOC340107 (LOC340107), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|323668266|ref|NR_037896.1| Homo sapiens uncharacterized LOC340107 (LOC340107), non-coding RNA"	Chr5	 24835389	 24837693	-	340107	NR_037896.1	NA	NA	NA	NA	NA	inter
CUST_12126_PI429285431	1.9113111	A	2.0172215	A	0.929218382484016	0	lncRNA	13723-1_{1..324}	lnc-PHF17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHF17-1:1	chr4	129581631	129581954	+	lnc-PHF17-1	lnc-PHF17-1:1	XLOC_003686	linc-PHF17-1	NA	NA	NA	inter
CUST_14054_PI429285431	3.283223	P	2.1061566	A	2.2611652019212	0	lncRNA	15700-1_{1..901}	lnc-SOD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOD1-2:1	chr21	 32965714	 32966614	+	lnc-SOD1-2	lnc-SOD1-2:1	XLOC_013910	linc-SOD1-2	NA	NA	NA	inter
CUST_31896_PI429285431	0.89706737	A	0.89336014	A	1.002572960418	0	lncRNA	33627-1_{1..1984}	n338450|BC039357|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|847|NULL|-0.9009960|-0.2599506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338450|BC039357|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|847|NULL|-0.9009960|-0.2599506	chr14	 91163676	 91165659	+	NA	NA	NA	NA	TTC7B	NA	chr14:91153676-91175718	inner
CUST_4764_PI429285431	4.988588	P	5.413771	P	0.744744257788669	0	lncRNA	4709-1_{1..647}	"transcript_id ""ENST00000549515.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000549515.1"" | genecode_v17"	chr14	 29859552	 29860198	+	ENSG00000258107.1	ENST00000549515.1	RP11-260G13.1	RP11-260G13.1-001	NA	NA	NA	inter
CUST_24477_PI429285431	0.9108689	A	0.90910584	A	1.00122280708783	0	lncRNA	26029-1_{1..2399}	lnc-C15orf48-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf48-1:4	chr15	 45769967	 45772365	+	lnc-C15orf48-1	lnc-C15orf48-1:4	ENSG00000259354.1	RP11-519G16.3	SLC30A4	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10chr15:45774676-45781942"	NA	inter
CUST_41488_PI429285431	0.89804846	A	1.6273534	A	0.60319445019885	0	lncRNA	42695-1_{1..70}	ENST00000578274 ncrna:miRNA chromosome:GRCh37:1:60198899:60198968:-1 gene:ENSG00000266150 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578274 ncrna:miRNA chromosome:GRCh37:1:60198899:60198968:-1 gene:ENSG00000266150 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 60198899	 60198968	-	ENSG00000266150	ENST00000578274	NA	NA	FGGY	NA	chr1:60188899-60208968	inner
CUST_2899_PI429285431	4.3896747	P	4.3302956	P	1.04201720608162	0	lncRNA	2880-1_{1..665}	"transcript_id ""ENST00000440208.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440208.1"" | genecode_v17"	chr7	108238819	108239483	+	ENSG00000225647.1	ENST00000440208.1	AC005487.2	AC005487.2-001	NA	NA	NA	inter
CUST_6276_PI429285431	2.4266822	A	2.7007258	A	0.82699837516819	0	lncRNA	6200-1_{1..367}	"transcript_id ""ENST00000578833.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578833.1"" | genecode_v17"	chr18	 75698830	 75699196	-	ENSG00000265843.1	ENST00000578833.1	RP11-671C19.1	RP11-671C19.1-004	NA	NA	NA	inter
CUST_19425_PI429285431	10.572374	P	10.4601345	P	1.08090482680479	0	lncRNA	21086-1_{1..368}	lnc-SH2D7-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SH2D7-5:3	chr15	 78080723	 78081090	+	lnc-SH2D7-5	lnc-SH2D7-5:3	ENSG00000259213.1	CTD-2071N1.1	NA	NA	NA	inter
CUST_43921_PI429285431	8.414603	P	8.308746	P	1.07613345309898	0	lncRNA	48634-1_{1..2053}	"gi|359751466|ref|NR_045607.1| Homo sapiens UDP-glucuronate decarboxylase 1 (UXS1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|359751466|ref|NR_045607.1| Homo sapiens UDP-glucuronate decarboxylase 1 (UXS1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_045607.1	NA	NA	NA	NA	NA	Unknown
CUST_38655_PI429285431	7.428261	P	7.650073	P	0.8574877700172	0	lncRNA	39658-1_{1..3000}	n383917|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xlo.2||-0.0083506|-0.2248358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n383917|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xlo.2||-0.0083506|-0.2248358	chr20	 42846121	 42849120	+	NA	NA	NA	NA	C20orf111	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr20:42836121-42839546"	NA	inter
CUST_39139_PI429285431	0.90367526	A	0.8981183	A	1.0038592188376	0	lncRNA	40115-1_{1..2212}	n385758|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dgq.1||0.2099470|-0.2388723	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385758|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dgq.1||0.2099470|-0.2388723	chrX	 46319732	 46321943	+	NA	NA	NA	NA	ZNF673	"hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90chrX:46309732-46331944"	NA	inner
LNCA_21_P0009051	3.5142314	P	2.984424	A	1.44373644362916	0	lncRNA	TCONS_00024702	NA	NA	NA	NA	XLOC_011980	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011980), lincRNA [TCONS_00024702]"	chr16:66165645-66165586	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024702	TCONS_00024702	chr16	 66165586	 66165645	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12576_PI429285431	2.13728	A	3.3636782	P	0.427383110136791	0	lncRNA	14184-1_{1..677}	lnc-C16orf55-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C16orf55-1:1	chr16	 89752302	 89752978	+	lnc-C16orf55-1	lnc-C16orf55-1:1	XLOC_011835	linc-CDK10	CDK10	NA	chr16:89753076-89762704	inter
CUST_32489_PI429285431	0.9096956	A	0.9030037	A	1.00464924597948	0	lncRNA	34158-1_{1..3000}	n339094|BC040292|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1524|NULL|-0.6706910|-0.2621447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n339094|BC040292|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1524|NULL|-0.6706910|-0.2621447	chr2	202978348	202981347	-	NA	NA	NA	NA	LOC100652824	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chr2:202968348-202978327"	NA	inter
CUST_45202_PI429285431	0.91995543	A	0.9246859	A	0.996726457817948	0	lncRNA	49666-3_{6001..7056}	"gi|225543100|ref|NR_027378.1| Homo sapiens uncharacterized LOC643763 (UG0898H09), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225543100|ref|NR_027378.1| Homo sapiens uncharacterized LOC643763 (UG0898H09), non-coding RNA"	Chr8	 63896420	 63897475	+	643763	NR_027378.1	NA	NA	NA	NA	NA	inter
CUST_51607_PI429285431	1.2661196	A	1.2895603	A	0.983883429290888	0	lncRNA	55173-1_{1..552}	hg19_lincRNAsTranscripts_TCONS_l2_00010700 range=chr17:30410198-30424129 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010700 range=chr17:30410198-30424129 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 30410198	 30410749	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39525_PI429285431	0.9196152	A	1.2134364	A	0.81573858540429	0	lncRNA	40471-1_{1..1771}	n387349|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011crh.1||2.5907600|-0.2275298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387349|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011crh.1||2.5907600|-0.2275298	chr5	 69170990	 69172760	+	NA	NA	NA	NA	SERF1B	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-20.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.70;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90chr5:69321078-69338935"	NA	inter
CUST_43857_PI429285431	2.6086378	A	1.9903044	A	1.53510080954905	0	lncRNA	48578-1_{1..1490}	"gi|374429546|ref|NR_046234.1| Homo sapiens WD repeat domain 92 (WDR92), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374429546|ref|NR_046234.1| Homo sapiens WD repeat domain 92 (WDR92), transcript variant 3, non-coding RNA"	Chr2	 68361216	 68362705	-	116143	NR_046234.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0011647	5.011566	P	5.086775	P	0.949204601844567	0	lncRNA	TCONS_l2_00011771	NA	NA	NA	NA	XLOC_l2_006256	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006256), lincRNA [TCONS_l2_00011771]"	chr18:11677341-11677400	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_l2_00011771	TCONS_l2_00011771	chr18	 11677341	 11677400	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1666_PI429285431	0.9077759	A	0.948018	A	0.972491738973107	0	lncRNA	1651-1_{1..558}	"transcript_id ""ENST00000438408.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438408.1"" | genecode_v17"	chr3	197171932	197172489	-	ENSG00000235126.1	ENST00000438408.1	AC128709.3	AC128709.3-001	NA	NA	NA	inter
CUST_3287_PI429285431	3.1439993	P	3.2637675	P	0.920335510448236	0	lncRNA	3265-1_{1..631}	"transcript_id ""ENST00000530350.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530350.2"" | genecode_v17"	chr8	123497754	123498384	-	ENSG00000255325.2	ENST00000530350.2	RP11-96B2.1	RP11-96B2.1-001	NA	NA	NA	inter
CUST_23423_PI429285431	1.9004196	A	2.326935	A	0.744056767262757	0	lncRNA	24991-1_{1..444}	lnc-C9orf103-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C9orf103-3:1	chr9	 85848965	 85849408	+	lnc-C9orf103-3	lnc-C9orf103-3:1	ENSG00000229109.1	RP11-439K3.1	NA	NA	NA	inter
LNCA_21_P0005600	3.040314	A	3.018706	A	1.01509024947261	0	lncRNA	ENST00000439751	NA	NA	NA	NA	XLOC_006414	NA	ENST00000439751	NA	NA	"BROAD Institute lincRNA (XLOC_006414), lincRNA [TCONS_00014283]"	chr7:39605751-39593494	hs|7p14.1	Agilent_HUMAN_G3V2	ENST00000439751	ENST00000439751	chr7	 39593494	 39605751	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30457_PI429285431	11.372033	P	11.587697	P	0.861149724563026	0	lncRNA	32237-1_{1..372}	n335598|CR595871|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000275066|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000275066|0.5027060|-0.1108835	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335598|CR595871|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000275066|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000275066|0.5027060|-0.1108835	chr19	 10370355	 10370726	+	NA	NA	NA	NA	MRPL4	NA	chr19:10362640-10370736	inner
CUST_18914_PI429285431	0.9138925	A	0.914111	A	0.999848558809423	0	lncRNA	20605-1_{1..2052}	lnc-IER3-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-IER3-5:2	chr6	 30798292	 30800343	-	lnc-IER3-5	lnc-IER3-5:2	ENSG00000214894	NCRNA00243	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10"	NA	inter
CUST_4602_PI429285431	4.554817	P	4.604464	P	0.966172704065091	0	lncRNA	4551-1_{1..547}	"transcript_id ""ENST00000425609.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425609.1"" | genecode_v17"	chr13	 43732767	 43733313	+	ENSG00000229928.1	ENST00000425609.1	LINC00400	LINC00400-001	NA	NA	NA	inter
CUST_51183_PI429285431	0.8949467	A	0.8996637	A	0.996735763989857	0	lncRNA	54803-1_{1..2085}	hg19_lincRNAsTranscripts_TCONS_l2_00007916 range=chr14:101535483-101539123 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007916 range=chr14:101535483-101539123 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	101535483	101537567	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12013_PI429285431	5.256712	P	5.804826	P	0.683913607798077	0	lncRNA	13595-1_{1..386}	lnc-SOX6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOX6-1:1	chr11	 15933334	 15933719	-	lnc-SOX6-1	lnc-SOX6-1:1	XLOC_009382	linc-CALCA	NA	NA	NA	inter
CUST_10211_PI429285431	7.288015	P	6.9350095	P	1.27721862833881	0	lncRNA	11738-1_{1..562}	lnc-PPP3CA-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-PPP3CA-2:1	chr4	101712327	101712888	-	lnc-PPP3CA-2	lnc-PPP3CA-2:1	XLOC_004025	linc-EMCN-3	NA	NA	NA	inter
CUST_5873_PI429285431	0.9046755	A	1.1328186	A	0.853733028957301	0	lncRNA	5803-1_{1..280}	"transcript_id ""ENST00000591950.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591950.1"" | genecode_v17"	chr17	 43623243	 43623522	+	ENSG00000267198.1	ENST00000591950.1	RP11-798G7.6	RP11-798G7.6-002	NA	NA	NA	inter
CUST_48652_PI429285431	0.91249317	A	0.90943676	A	1.00212078766977	0	lncRNA	52499-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00013793 range=chr2:91966651-91970807 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013793 range=chr2:91966651-91970807 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 91966651	 91969650	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50"	NA	inter
CUST_1686_PI429285431	6.813409	P	6.8582077	P	0.969425071890349	0	lncRNA	1669-1_{1..685}	"transcript_id ""ENST00000503186.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503186.1"" | genecode_v17"	chr4	  8322006	  8322690	+	ENSG00000248986.1	ENST00000503186.1	RP11-774O3.1	RP11-774O3.1-002	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10"	NA	inter
CUST_34813_PI429285431	3.5176373	P	4.2484426	P	0.602567471959095	0	lncRNA	36247-1_{1..3000}	n341721|BC045178|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4194|NULL|0.1635420|-0.3414834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341721|BC045178|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4194|NULL|0.1635420|-0.3414834	chr9	 94035853	 94038852	-	NA	NA	NA	NA	AUH	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50chr9:94025853-94049649"	NA	inner
LNCA_21_P0014357	2.4776373	A	2.410921	A	1.04733015371488	0	lncRNA	ENST00000521847	XR_109437	XR_109437	NA	Hs.389678	ENDOV	endonuclease V	ENST00000521847	THC2499602	GO:0006281|GO:0004519|GO:0000287|GO:0016787|GO:0016888	"PREDICTED: Homo sapiens hypothetical LOC100507440 (LOC100507440), miscRNA [XR_109437]"	chr17:78392331-78392390	hs|17q25.3	Agilent_HUMAN_G3V2	ENST00000521847	ENST00000521847	chr17	 78392331	 78392390	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8660_PI429285431	3.8806386	P	3.5809407	P	1.23088663898613	0	lncRNA	10211-1_{1..1235}	lnc-ZNF667-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF667-1:1	chr19	 57066509	 57067743	-	lnc-ZNF667-1	lnc-ZNF667-1:1	ENSG00000246247	ENST00000499394	ZFP28	"hg19_refFlat_ZFP28:range=chr19:57050388-570667615'pad=0,hg19_refFlat_ZFP28:range=chr19:57050388-570667615'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40chr19:57056509-57068170"	NA	inner
CUST_19995_PI429285431	0.908283	A	0.91028786	A	0.998611302078165	0	lncRNA	21648-1_{1..1734}	lnc-NAALAD2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NAALAD2-1:5	chr11	 90585233	 90586966	+	lnc-NAALAD2-1	lnc-NAALAD2-1:5	ENSG00000261645.1	RP11-660M18.2	NA	NA	NA	inter
LNCA_21_P0004736	0.92632484	A	0.9235154	A	1.0019492527429	0	lncRNA	XR_108683	XR_108683	XR_108683	NA	Hs.346489	LOC100506885	uncharacterized LOC100506885	NA	THC2606520	NA	"PREDICTED: Homo sapiens hypothetical LOC100506885, transcript variant 2 (LOC100506885), miscRNA [XR_108683]"	chr6:19803897-19803838	hs|6p22.3	Agilent_HUMAN_G3V2	XR_108683	XR_108683	chr6	 19803838	 19803897	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34939_PI429285431	2.7477598	A	1.8716781	A	1.83538369968747	0	lncRNA	36357-1_{1..1776}	n341856|AK095203|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4336|NULL|-1.1805400|-0.3548879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341856|AK095203|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4336|NULL|-1.1805400|-0.3548879	chr12	 20835230	 20837005	+	NA	NA	NA	NA	PDE3A	NA	chr12:20825230-20833881	inner
LNCA_21_P0006444	0.92639196	A	0.922492	A	1.00270690334309	0	lncRNA	AY092822	NA	AY092822	NA	Hs.554726	LOC729609	uncharacterized LOC729609	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008126), lincRNA [TCONS_00017045]"	chrX:20007912-20007853	hs|Xp22.12	Agilent_HUMAN_G3V2	AY092822	AY092822	chrX	 20007853	 20007912	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41860_PI429285431	5.01146	P	5.5628653	P	0.682355136243283	0	lncRNA	43514-1_{1..85}	ENST00000583622 ncrna:miRNA chromosome:GRCh37:6:35101231:35101315:1 gene:ENSG00000264241 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583622 ncrna:miRNA chromosome:GRCh37:6:35101231:35101315:1 gene:ENSG00000264241 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 35101231	 35101315	+	ENSG00000264241	ENST00000583622	NA	NA	TCP11	NA	chr6:35091231-35109187	inner
CUST_17330_PI429285431	3.646274	P	4.2422237	P	0.66160878674288	0	lncRNA	19048-1_{1..1546}	lnc-C16orf95.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C16orf95.1-1:1	chr16	 86964795	 86966340	-	lnc-C16orf95.1-1	lnc-C16orf95.1-1:1	XLOC_012049	linc-MTHFSD-5	NA	NA	NA	inter
CUST_34077_PI429285431	5.6902866	P	5.1611958	P	1.44301950442468	0	lncRNA	35606-1_{1..2038}	n340901|BC035154|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3366|NULL|-0.1605930|-0.3600101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340901|BC035154|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3366|NULL|-0.1605930|-0.3600101	chr6	 27369661	 27371698	+	NA	NA	NA	NA	ZNF391	NA	chr6:27359661-27369227	inter
CUST_21120_PI429285431	5.313025	P	5.314693	P	0.998844498609273	0	lncRNA	22746-1_{1..2423}	lnc-C4orf42-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C4orf42-1:6	chr4	  1259128	  1261550	+	lnc-C4orf42-1	lnc-C4orf42-1:6	ENSG00000196810.4	CTBP1-AS1	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80"	NA	inter
CUST_19214_PI429285431	2.4295626	A	3.099851	A	0.628381059039235	0	lncRNA	20884-1_{1..791}	lnc-LRRC53-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC53-1:1	chr1	 74844380	 74845170	-	lnc-LRRC53-1	lnc-LRRC53-1:1	ENSG00000237324.2	RP11-439H8.4	FPGT-TNNI3K	"hg19_refFlat_FPGT-TNNI3K:range=chr1:74663963-749304265'pad=0,hg19_refFlat_FPGT-TNNI3K:range=chr1:74663963-749304265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TNNI3K:range=chr1:74701136-750096665'pad=0,hg19_refFlat_TNNI3K:range=chr1:74701136-750096665'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FPGT-TNNI3K:range=chr1:74663963-750096665'pad=0,hg19_refFlat_FPGT-TNNI3K:range=chr1:74663963-750096665'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70chr1:74834380-74854486"	NA	inner
CUST_34459_PI429285431	0.9165877	A	0.9067817	A	1.00682015329067	0	lncRNA	35933-1_{1..2054}	n341335|BC047556|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3804|NULL|-1.2713100|-0.2431178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341335|BC047556|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3804|NULL|-1.2713100|-0.2431178	chr7	137531775	137533828	+	NA	NA	NA	NA	DGKI	NA	chr7:137521775-137531609	inter
CUST_33805_PI429285431	0.9217176	A	0.9103291	A	1.00792514569225	0	lncRNA	35357-1_{1..2220}	n340594|AK055059|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3056|NULL|-1.1056700|-0.3394439	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340594|AK055059|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3056|NULL|-1.1056700|-0.3394439	chr5	115887965	115890184	-	NA	NA	NA	NA	SEMA6A	NA	chr5:115877965-115900185	inner
CUST_3278_PI429285431	2.527061	A	2.2702432	A	1.19484029725442	0	lncRNA	3256-1_{1..547}	"transcript_id ""ENST00000522187.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522187.1"" | genecode_v17"	chr8	120227778	120228324	-	ENSG00000253972.1	ENST00000522187.1	RP11-4K16.2	RP11-4K16.2-002	MAL2	NA	chr8:120220610-120257913	inner
CUST_4289_PI429285431	1.0097067	A	0.90248847	A	1.07714929940768	0	lncRNA	4244-1_{1..690}	"transcript_id ""ENST00000537250.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537250.1"" | genecode_v17"	chr12	 65860600	 65861289	-	ENSG00000250748.2	ENST00000537250.1	RP11-230G5.2	RP11-230G5.2-003	MSRB3	NA	chr12:65850600-65860687	inner
CUST_29133_PI429285431	0.9192998	A	1.1698476	A	0.840577182429161	0	lncRNA	30874-1_{1..693}	n326639|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000012075|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000012075|-1.1328800|-0.3085143	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326639|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000012075|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000012075|-1.1328800|-0.3085143	chr1	 35414567	 35415259	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8700_PI429285431	0.9248116	A	0.9084579	A	1.01140001151274	0	lncRNA	10247-1_{1..3000}	lnc-CLLU1.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CLLU1.1-2:3	chr12	 92577902	 92580901	+	lnc-CLLU1.1-2	lnc-CLLU1.1-2:3	ENSG00000245904	RP11-796E2.4	NA	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60"	NA	inter
CUST_8332_PI429285431	1.0543282	A	1.5708276	A	0.699066012397173	0	lncRNA	9914-1_{1..1880}	lnc-UBAP2L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBAP2L-1:1	chr1	154185825	154187704	+	lnc-UBAP2L-1	lnc-UBAP2L-1:1	ENSG00000246604	ENST00000502106	UBAP2L	"hg19_refFlat_C1orf43:range=chr1:154179929-1541928835'pad=0,hg19_refFlat_C1orf43:range=chr1:154179929-1541928835'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr1:154192655-154196381"	NA	inner
CUST_43962_PI429285431	4.184126	P	5.6775293	P	0.355173709434941	0	lncRNA	48667-1_{1..2770}	"gi|374532826|ref|NR_046259.1| Homo sapiens uncharacterized LOC100216479 (LOC100216479), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374532826|ref|NR_046259.1| Homo sapiens uncharacterized LOC100216479 (LOC100216479), transcript variant 2, non-coding RNA"	Chr2	131174323	131177092	-	100216479	NR_046259.1	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70"	NA	inter
CUST_33010_PI429285431	1.3505058	A	1.4823921	A	0.91263741142519	0	lncRNA	34625-2_{3001..4383}	n339692|AK126946|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2137|NULL|-0.1720520|-0.2821181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339692|AK126946|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2137|NULL|-0.1720520|-0.2821181	chr3	172430786	172432168	+	NA	NA	NA	NA	NCEH1	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NCEH1:range=chr3:172351265-1724288705'pad=0,hg19_refFlat_NCEH1:range=chr3:172351265-1724288705'pad=0 3'pad=0 strand=- repeatMasking=none,-100.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.03;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60chr3:172417786-172429008"	NA	inner
CUST_28373_PI429285431	0.925482	A	1.4616195	A	0.689614732161601	0	lncRNA	30024-1_{1..546}	n325687|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045352|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045352|-1.2258500|-0.3794396	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325687|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045352|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045352|-1.2258500|-0.3794396	chr13	 77461507	 77462052	-	NA	NA	NA	NA	KCTD12	NA	chr13:77454304-77460540	inter
CUST_38978_PI429285431	3.3577113	P	3.7337124	P	0.770570520827522	0	lncRNA	39962-1_{1..743}	n385208|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tvs.3||1.8151300|-0.2435090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385208|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tvs.3||1.8151300|-0.2435090	chr7	 66757423	 66758165	-	NA	NA	NA	NA	STAG3L4	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30chr7:66767616-66777406"	NA	inter
CUST_20186_PI429285431	0.9185991	A	0.91768837	A	1.00063146922455	0	lncRNA	21829-1_{1..717}	lnc-USP35-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-USP35-4:1	chr11	 78269310	 78270026	+	lnc-USP35-4	lnc-USP35-4:1	ENSG00000255084.1	RP11-843A23.1	NARS2	NA	chr11:78259310-78279611	inner
CUST_27912_PI429285431	0.9248876	A	0.9025724	A	1.01558796228158	0	lncRNA	29512-1_{1..544}	n325155|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330753|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330753|-1.0329300|-0.1800058	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325155|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330753|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330753|-1.0329300|-0.1800058	chr2	121652372	121652915	+	NA	NA	NA	NA	GLI2	NA	chr2:121642372-121666626	inner
CUST_23944_PI429285431	1.2433107	A	1.3382964	A	0.936281527815386	0	lncRNA	25501-1_{1..712}	lnc-INTS4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-INTS4-1:1	chr11	 77580741	 77581452	-	lnc-INTS4-1	lnc-INTS4-1:1	ENSG00000255449.1	RP11-91P24.6	INTS4	"hg19_refFlat_AAMDC:range=chr11:77553543-775833615'pad=0,hg19_refFlat_AAMDC:range=chr11:77553543-775833615'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10chr11:77589766-77591137"	NA	inner
CUST_110_PI429201921	3.6329346	P	4.0619807	P	0.742752725967454	0	lncRNA	110-2_{3001..3219}	TC15002062.hg.1	TCONS_l2_00009397-XLOC_l2_004555 // Broad TUCP // linc-OR4M2-4 chr15:+:20723928-20727148 // chr15 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00008401-XLOC_l2_004555 // Broad TUCP // linc-OR4M2-4 chr15:+:20724219-20727146 // chr15 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr15:+:20723928-20727148	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00009397-XLOC_l2_004555	linc-OR4M2-4	chr15	 20723928	 20727148	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5817_PI429285431	4.538454	P	4.9524326	P	0.750550681855319	0	lncRNA	5744-1_{1..323}	"transcript_id ""ENST00000441287.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441287.1"" | genecode_v17"	chr17	 32806353	 32806675	+	ENSG00000225582.1	ENST00000441287.1	AC011193.1	AC011193.1-001	NA	NA	NA	inter
CUST_18052_PI429285431	0.9052898	A	1.1667552	A	0.834240119640888	0	lncRNA	19787-1_{1..1382}	lnc-CLEC18B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLEC18B-4:1	chr16	 74028507	 74029888	-	lnc-CLEC18B-4	lnc-CLEC18B-4:1	XLOC_012006	linc-ZFHX3-3	NA	NA	NA	inter
CUST_8164_PI429285431	1.3894517	A	2.3026686	A	0.530999754819039	0	lncRNA	9766-2_{3001..5246}	lnc-TNRC6A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNRC6A-1:1	chr16	 24721366	 24723611	+	lnc-TNRC6A-1	lnc-TNRC6A-1:1	ENSG00000249217	XLOC_011677	NA	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-21.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70"	NA	inter
LNCA_21_P0005750	0.91461504	A	0.902911	A	1.00814561881667	0	lncRNA	THC2727551	NA	NA	NA	NA	XLOC_006902	NA	NA	THC2727551	NA	"BROAD Institute lincRNA (XLOC_006902), lincRNA [TCONS_00014832]"	chr8:112712435-112712494	hs|8q23.3	Agilent_HUMAN_G3V2	THC2727551	THC2727551	chr8	112712435	112712494	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49666_PI429285431	2.5230906	A	2.5772038	A	0.96318631535279	0	lncRNA	53447-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026947 range=chr7:149244194-149321764 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026947 range=chr7:149244194-149321764 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	149244194	149247193	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007689	3.9836185	P	4.0303264	P	0.968143025315542	0	lncRNA	THC2730876	NA	NA	NA	NA	XLOC_010023	NA	NA	THC2730876	NA	"BROAD Institute lincRNA (XLOC_010023), lincRNA [TCONS_00020723]"	chr12:014899716-014899657	hs|12p12.3	Agilent_HUMAN_G3V2	THC2730876	THC2730876	chr12	 14899657	 14899716	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23274_PI429285431	0.9079444	A	0.9002853	A	1.00532300066396	0	lncRNA	24845-1_{1..616}	lnc-PPP4R1-11:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-PPP4R1-11:1	chr18	  8366855	  8367470	-	lnc-PPP4R1-11	lnc-PPP4R1-11:1	ENSG00000266149.1	RP11-789C17.3	PTPRM	NA	chr18:8356855-8377032	inner
CUST_39052_PI429285431	0.892552	A	0.89667374	A	0.997147104802018	0	lncRNA	40030-1_{1..387}	n385486|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zod.1||-0.8396390|-0.1878515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385486|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zod.1||-0.8396390|-0.1878515	chr9	 19786909	 19787295	-	NA	NA	NA	NA	SLC24A2	NA	chr9:19776909-19788591	inner
CUST_17822_PI429285431	1.0517294	A	0.88853955	A	1.11976023267859	0	lncRNA	19558-1_{1..246}	lnc-PRLR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRLR-1:1	chr5	 35318710	 35318955	-	lnc-PRLR-1	lnc-PRLR-1:1	XLOC_004777	linc-PRLR	NA	NA	NA	inter
CUST_50441_PI429285431	3.0172915	P	2.5545342	A	1.3781732877626	0	lncRNA	54144-1_{1..540}	hg19_lincRNAsTranscripts_TCONS_l2_00030197 range=chrX:48306416-48307284 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030197 range=chrX:48306416-48307284 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 48306416	 48306955	+	NA	NA	NA	NA	SLC38A5	"hg19_refFlat_OAT:range=chr10:126086511-1261007405'pad=0,hg19_refFlat_OAT:range=chr10:126086511-1261007405'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_OAT:range=chr10:126086511-1260973195'pad=0,hg19_refFlat_OAT:range=chr10:126086511-1260973195'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90chrX:48316927-48317284"	NA	inter
CUST_51172_PI429285431	5.5094824	P	5.33646	P	1.12741791686026	0	lncRNA	54793-1_{1..286}	hg19_lincRNAsTranscripts_TCONS_l2_00007760 range=chr14:62114220-62124492 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007760 range=chr14:62114220-62124492 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 62114220	 62114505	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25167_PI429285431	0.8972135	A	0.8928408	A	1.00303552257275	0	lncRNA	26703-1_{1..3000}	lnc-ZNF862-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:2	chr7	149530900	149533899	+	lnc-ZNF862-1	lnc-ZNF862-1:2	ENSG00000197558.7	SSPO	ZNF862	NA	chr7:149535509-149541054	inner
CUST_14799_PI429285431	0.8983211	A	0.89347404	A	1.00336537617825	0	lncRNA	16460-1_{1..793}	lnc-PCDH8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH8-2:1	chr13	 53704433	 53705225	-	lnc-PCDH8-2	lnc-PCDH8-2:1	XLOC_010624	linc-PCDH8-9	NA	NA	NA	inter
CUST_11377_PI429285431	0.9066301	A	0.8877571	A	1.01316770739218	0	lncRNA	12942-1_{1..420}	lnc-AJAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AJAP1-1:1	chr1	  4643957	  4644376	+	lnc-AJAP1-1	lnc-AJAP1-1:1	XLOC_000035	linc-AJAP1-1	NA	NA	NA	inter
CUST_33636_PI429285431	10.255304	P	10.0258875	P	1.1723606904321	0	lncRNA	35201-1_{1..291}	n340398|U52829|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2859|NULL|-0.9437250|-0.2701856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340398|U52829|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2859|NULL|-0.9437250|-0.2701856	chr5	 10713449	 10713739	-	NA	NA	NA	NA	DAP	NA	chr5:10703449-10723740	inner
CUST_11375_PI429285431	2.565813	A	2.031874	A	1.44787695198386	0	lncRNA	12940-1_{1..440}	lnc-RAB2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB2A-1:1	chr8	 60987153	 60987592	+	lnc-RAB2A-1	lnc-RAB2A-1:1	XLOC_006814	linc-RAB2A-1	NA	NA	NA	inter
CUST_36895_PI429285431	1.784667	A	0.9128308	A	1.82999055189317	0	lncRNA	38055-1_{1..918}	n345368|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_917|NULL|-1.3148900|-0.3273985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345368|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_917|NULL|-1.3148900|-0.3273985	chr18	 72259009	 72259926	+	NA	NA	NA	NA	CNDP1	NA	chr18:72249009-72252261	inter
CUST_52160_PI429285431	9.294824	P	9.802366	P	0.703419873178213	0	lncRNA	55683-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017933 range=chr22:23738063-23744587 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017933 range=chr22:23738063-23744587 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 23738063	 23741062	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24113_PI429285431	6.0564322	P	6.002465	P	1.03811566847884	0	lncRNA	25663-1_{1..584}	lnc-C9orf147-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C9orf147-1:1	chr9	115246736	115247319	-	lnc-C9orf147-1	lnc-C9orf147-1:1	ENSG00000251540.1	RP11-32M23.4	KIAA1958	NA	chr9:115249248-115256906	inter
CUST_24263_PI429285431	0.9163584	A	1.342196	A	0.744406418540466	0	lncRNA	25814-1_{1..1049}	lnc-ARHGAP24-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARHGAP24-1:2	chr4	 87140928	 87141976	+	lnc-ARHGAP24-1	lnc-ARHGAP24-1:2	ENSG00000250062.1	RP11-778J15.1	MAPK10	NA	chr4:87130928-87151079	inner
CUST_45691_PI429285431	3.772882	P	2.4646702	A	2.47634410353388	0	lncRNA	50063-1_{1..2830}	"gi|343403811|ref|NR_044994.1| Homo sapiens CTAGE family, member 7, pseudogene (CTAGE7P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|343403811|ref|NR_044994.1| Homo sapiens CTAGE family, member 7, pseudogene (CTAGE7P), non-coding RNA"	Chr10	131904273	131907102	+	119437	NR_044994.1	NA	NA	NA	NA	NA	inter
CUST_49972_PI429285431	9.420743	P	9.297539	P	1.08915101260662	0	lncRNA	53717-4_{9001..12000}	hg19_lincRNAsTranscripts_TCONS_l2_00026970 range=chr7:149714423-149745413 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026970 range=chr7:149714423-149745413 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	149723423	149726422	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39751_PI429285431	5.4059424	P	5.213589	P	1.14262610822027	0	lncRNA	40673-1_{1..1064}	n405889|NR_003129_5|lncRNA|Homosapiens||RefGeneNoncode|NR_003129_5||-0.1798340|-0.2694161	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405889|NR_003129_5|lncRNA|Homosapiens||RefGeneNoncode|NR_003129_5||-0.1798340|-0.2694161	chr6	  3493959	  3495022	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.39;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-25.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0,hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-20.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20"	NA	inter
CUST_37380_PI429285431	0.9022772	A	0.8933373	A	1.00621590553603	0	lncRNA	38483-1_{1..378}	n345828|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1377|NULL|-1.2663700|-0.2013205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345828|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1377|NULL|-1.2663700|-0.2013205	chr6	 41102295	 41102672	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43684_PI429285431	7.2537045	P	5.3981414	P	3.6189297433502	0	lncRNA	48436-1_{1..2090}	"gi|188528678|ref|NR_023349.1| Homo sapiens tRNA splicing endonuclease 15 homolog (S. cerevisiae) (TSEN15), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|188528678|ref|NR_023349.1| Homo sapiens tRNA splicing endonuclease 15 homolog (S. cerevisiae) (TSEN15), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_023349.1	NA	NA	NA	NA	NA	Unknown
CUST_51667_PI429285431	7.1886716	P	7.3437304	P	0.898095768400069	0	lncRNA	55233-4_{9001..11356}	hg19_lincRNAsTranscripts_TCONS_l2_00010936 range=chr17:66098133-66132705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010936 range=chr17:66098133-66132705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 66107133	 66109488	+	NA	NA	NA	NA	NA	"hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0,hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0,hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0,hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0,hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0,hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SH3GL1:range=chr19:4361597-44003655'pad=0,hg19_refFlat_SH3GL1:range=chr19:4361597-44003655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0,hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50"	NA	inter
CUST_5425_PI429285431	0.89537966	A	0.89182	A	1.00247041475096	0	lncRNA	5359-1_{1..502}	"transcript_id ""ENST00000566787.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566787.1"" | genecode_v17"	chr16	 10608699	 10609200	-	ENSG00000260468.1	ENST00000566787.1	RP11-27M24.3	RP11-27M24.3-001	EMP2	NA	chr16:10622279-10632059	inter
LNCA_21_P0009887	1.3074337	A	1.9185019	A	0.65471176085835	0	lncRNA	ENST00000455890	NA	NA	NA	NA	XLOC_013675	NA	ENST00000455890	THC2655304	NA	"BROAD Institute lincRNA (XLOC_013675), lincRNA [TCONS_00028014]"	chr20:21074255-21074196	hs|20p11.23	Agilent_HUMAN_G3V2	ENST00000455890	ENST00000455890	chr20	 21074196	 21074255	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006142	0.9143441	A	1.5473053	A	0.644851467801436	0	lncRNA	TCONS_00015970	NA	NA	NA	NA	XLOC_007342	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007342), lincRNA [TCONS_00015970]"	chr9:35929846-35930094	hs|9p13.3	Agilent_HUMAN_G3V2	TCONS_00015970	TCONS_00015970	chr9	 35929846	 35930094	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44004_PI429285431	2.5654197	A	1.7532861	A	1.75580618318003	0	lncRNA	48696-2_{3001..5736}	"gi|259906386|ref|NR_028482.1| Homo sapiens DDB1 and CUL4 associated factor 17 (DCAF17), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|259906386|ref|NR_028482.1| Homo sapiens DDB1 and CUL4 associated factor 17 (DCAF17), transcript variant 3, non-coding RNA"	Chr2	172293761	172296496	+	80067	NR_028482.1	NA	NA	NA	NA	NA	inter
CUST_5440_PI429285431	8.779628	P	8.866454	P	0.941592020855874	0	lncRNA	5374-1_{1..551}	"transcript_id ""ENST00000568026.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568026.1"" | genecode_v17"	chr16	 17634188	 17634738	-	ENSG00000260945.1	ENST00000568026.1	RP11-916L7.1	RP11-916L7.1-001	NA	NA	NA	inter
CUST_46721_PI429285431	8.483132	P	8.450918	P	1.02258020225765	0	lncRNA	50877-1_{1..1439}	"gi|259155322|ref|NR_028504.1| Homo sapiens MIR22 host gene (non-protein coding) (MIR22HG), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|259155322|ref|NR_028504.1| Homo sapiens MIR22 host gene (non-protein coding) (MIR22HG), transcript variant 3, non-coding RNA"	Chr17	  1614798	  1616236	-	84981	NR_028504.1	NA	NA	NA	NA	NA	inter
LNCA_33_P3394789	5.4719176	P	5.8033533	P	0.79474519829341	0	lncRNA	XR_132982	XR_132982	XR_132982	100653296	NA	LOC100653296	uncharacterized LOC100653296	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100653296 (LOC100653296), miscRNA [XR_132982]"	chr12:79184-79243	hs|12p13.33	Agilent_HUMAN_G3V2	XR_132982	XR_132982	chr12	    79184	    79243	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41360_PI429285431	8.33185	P	8.316358	P	1.01079609790443	0	lncRNA	42433-1_{1..90}	ENST00000578066 ncrna:miRNA chromosome:GRCh37:6:5148467:5148556:-1 gene:ENSG00000265083 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578066 ncrna:miRNA chromosome:GRCh37:6:5148467:5148556:-1 gene:ENSG00000265083 gene_biotype:miRNA transcript_biotype:miRNA	chr6	  5148467	  5148556	-	ENSG00000265083	ENST00000578066	NA	NA	LYRM4	NA	chr6:5138467-5158556	inner
CUST_14638_PI429285431	0.91023237	A	1.6613089	A	0.594160033550344	0	lncRNA	16308-1_{1..545}	lnc-PPIE-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPIE-3:1	chr1	 40303549	 40304093	+	lnc-PPIE-3	lnc-PPIE-3:1	XLOC_000155	linc-MFSD2A	TRIT1	NA	chr1:40306703-40313684	inter
CUST_36917_PI429285431	0.9089606	A	0.91521	A	0.995677614523877	0	lncRNA	38075-1_{1..915}	n345389|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_938|NULL|-1.4892500|-0.3250231	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345389|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_938|NULL|-1.4892500|-0.3250231	chr20	 56822111	 56823025	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_573_PI429285431	0.891264	A	0.89088774	A	1.00026083757036	0	lncRNA	565-1_{1..245}	"transcript_id ""ENST00000413159.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413159.1"" | genecode_v17"	chr1	220533073	220533317	-	ENSG00000226927.1	ENST00000413159.1	RP11-302I18.3	RP11-302I18.3-001	NA	NA	NA	inter
LNCA_21_P0006477	4.1475954	P	4.335321	P	0.877988774831305	0	lncRNA	TCONS_00017121	NA	NA	NA	NA	XLOC_007914	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007914), lincRNA [TCONS_00017121]"	chrX:1780897-1781064	hs|Xp22.33	Agilent_HUMAN_G3V2	TCONS_00017121	TCONS_00017121	chrX	  1780897	  1781064	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39131_PI429285431	12.596967	P	12.33994	P	1.19501356929524	0	lncRNA	40107-1_{1..2308}	n385729|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004cox.3||8.7780600|-0.2852693	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385729|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004cox.3||8.7780600|-0.2852693	chrM	    12337	    14644	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39514_PI429285431	3.7713308	P	3.2318807	P	1.45341842438515	0	lncRNA	40460-1_{1..1514}	n387303|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011buh.1||-1.0514000|-0.1713532	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387303|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011buh.1||-1.0514000|-0.1713532	chr3	197369919	197371432	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27406_PI429285431	0.92069983	A	0.92002213	A	1.00046985619212	0	lncRNA	28970-1_{1..387}	n324571|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039988|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039988|-1.0648400|-0.2278120	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324571|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039988|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039988|-1.0648400|-0.2278120	chr6	 21462620	 21463006	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30"	NA	inter
CUST_35216_PI429285431	6.544207	P	6.7754993	P	0.851871482531149	0	lncRNA	36616-1_{1..992}	n342202|CR623081|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4692|NULL|1.3981100|-0.5631097	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342202|CR623081|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4692|NULL|1.3981100|-0.5631097	chr1	   565038	   566029	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49563_PI429285431	0.9206066	A	0.91211337	A	1.005904421212	0	lncRNA	53353-1_{1..307}	hg19_lincRNAsTranscripts_TCONS_l2_00024371 range=chr6:109657577-109659068 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024371 range=chr6:109657577-109659068 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	109657577	109657883	+	NA	NA	NA	NA	LOC100506339	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-29.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.10chr6:109648378-109669068"	NA	inter
CUST_33661_PI429285431	1.5329615	A	0.9190391	A	1.53041444933781	0	lncRNA	35223-1_{1..1126}	n340424|CR620587|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2885|NULL|-1.3162900|-0.3361340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340424|CR620587|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2885|NULL|-1.3162900|-0.3361340	chr5	 31558856	 31559981	+	NA	NA	NA	NA	C5orf22	NA	chr5:31548856-31555165	inter
CUST_49779_PI429285431	10.594336	P	9.954889	P	1.55773195002744	0	lncRNA	53539-1_{1..210}	hg19_lincRNAsTranscripts_TCONS_l2_00025900 range=chr7:57068863-57069879 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025900 range=chr7:57068863-57069879 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 57068863	 57069072	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36627_PI429285431	0.9109465	A	1.7761126	A	0.548983197860438	0	lncRNA	37820-2_{3001..3893}	n345123|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_672|NULL|-1.2755700|-0.3151349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345123|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_672|NULL|-1.2755700|-0.3151349	chr10	 79527923	 79528815	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3222_PI429285431	3.7227073	P	3.7592752	P	0.974971599833918	0	lncRNA	3201-1_{1..620}	"transcript_id ""ENST00000524361.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524361.1"" | genecode_v17"	chr8	 91233745	 91234364	+	ENSG00000253394.1	ENST00000524361.1	LINC00534	LINC00534-003	NA	NA	NA	inter
LNCA_21_P0014327	2.5693903	A	2.9411683	A	0.772829462471657	0	lncRNA	XR_109302	XR_109302	XR_109302	NA	NA	LOC100505692	uncharacterized LOC100505692	NA	THC2610470	NA	"PREDICTED: Homo sapiens hypothetical LOC100505692 (LOC100505692), miscRNA [XR_109302]"	chr16:54074060-54074119	hs|16q12.2	Agilent_HUMAN_G3V2	XR_109302	XR_109302	chr16	 54074060	 54074119	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35982_PI429285431	12.497346	P	11.409177	P	2.12604038248425	0	lncRNA	37325-1_{1..660}	n344600|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_148|NULL|-1.5651400|-0.2904338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344600|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_148|NULL|-1.5651400|-0.2904338	NA	NA	      659	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5389_PI429285431	1.2944468	A	1.9638741	A	0.628756232190406	0	lncRNA	5323-1_{1..1090}	"transcript_id ""ENST00000440800.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440800.2"" | genecode_v17"	chr16	  1310953	  1312042	-	ENSG00000196364.7	ENST00000440800.2	PRSS29P	PRSS29P-201	UBE2I	NA	chr16:1311004-1322960	inter
CUST_30538_PI429285431	13.706037	P	13.2947235	P	1.32989606538265	0	lncRNA	32318-1_{1..481}	n335708|CR622741|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000301936|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000301936|-0.9068590|-0.2033651	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335708|CR622741|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000301936|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000301936|-0.9068590|-0.2033651	chr11	 75283343	 75283823	+	NA	NA	NA	NA	SERPINH1	NA	chr11:75273343-75283849	inner
CUST_45921_PI429285431	0.9118162	A	1.1019014	A	0.876553953894629	0	lncRNA	50230-2_{3001..3956}	"gi|384871606|ref|NR_047588.1| Homo sapiens transmembrane protein 218 (TMEM218), transcript variant 14, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384871606|ref|NR_047588.1| Homo sapiens transmembrane protein 218 (TMEM218), transcript variant 14, non-coding RNA"	Chr11	124967266	124968221	-	219854	NR_047588.1	NA	NA	NA	NA	NA	inter
CUST_46675_PI429285431	6.0568	P	6.3730316	P	0.803165052002824	0	lncRNA	50843-1_{1..1114}	"gi|238859661|ref|NR_027756.1| Homo sapiens uncharacterized LOC283902 (HTA), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|238859661|ref|NR_027756.1| Homo sapiens uncharacterized LOC283902 (HTA), non-coding RNA"	Chr16	 73126248	 73127361	+	283902	NR_027756.1	NA	NA	NA	NA	NA	inter
CUST_118_PI429201921	16.14214	P	15.289943	P	1.80524794469244	0	lncRNA	114-2_{...	TC6_cox_hap2000214.hg.1	TCONS_l2_00031076-XLOC_l2_015980 // Broad TUCP // linc-FAM71E1 chr6_cox_hap2:+:1407785-1411187 // chr6_cox_hap2 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6_cox_hap2:+:1407785-1411187	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031076-XLOC_l2_015980	linc-FAM71E1	chr6_cox_hap2	  1407785	  1411187	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9235_PI429285431	10.851509	P	11.955364	P	0.465271589246701	0	lncRNA	10745-1_{1..2067}	lnc-CTCFL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTCFL-1:1	chr20	 56133904	 56135970	-	lnc-CTCFL-1	lnc-CTCFL-1:1	ENSG00000251422	XLOC_013814	PCK1	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-25.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr20:56136137-56141513"	NA	inter
CUST_38361_PI429285431	1.0712298	A	0.91957074	A	1.11084618068695	0	lncRNA	39403-1_{1..343}	n382147|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001wqi.2||-1.3753600|-0.3560414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382147|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001wqi.2||-1.3753600|-0.3560414	chr14	 30083719	 30084061	-	NA	NA	NA	NA	PRKD1	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70chr14:30073719-30094062"	NA	inner
CUST_15670_PI429285431	1.2040571	A	1.5470203	A	0.788420284679533	0	lncRNA	17357-2_{3001..3644}	lnc-VSTM2B-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VSTM2B-6:4	chr19	 29464311	 29464954	+	lnc-VSTM2B-6	lnc-VSTM2B-6:4	XLOC_013027	linc-VSTM2B-6	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
CUST_14158_PI429285431	1.8922493	A	1.9376448	A	0.969024132524818	0	lncRNA	15809-1_{1..370}	lnc-ALDH1B1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALDH1B1-2:1	chr9	 38134593	 38134962	+	lnc-ALDH1B1-2	lnc-ALDH1B1-2:1	XLOC_007349	linc-ALDH1B1-2	NA	NA	NA	inter
CUST_38758_PI429285431	1.0697024	A	1.2873001	A	0.859996265443708	0	lncRNA	39750-1_{1..1841}	n384337|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003euj.1||-0.0638581|-0.1650067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384337|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003euj.1||-0.0638581|-0.1650067	chr3	141655548	141657388	-	NA	NA	NA	NA	TFDP2	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-23.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-50.01;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80chr3:141663270-141667389"	NA	inter
CUST_2041_PI429285431	3.3857594	P	3.8032923	P	0.748703861295052	0	lncRNA	2033-1_{1..553}	"transcript_id ""ENST00000515086.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515086.1"" | genecode_v17"	chr5	  2965120	  2965672	+	ENSG00000248736.1	ENST00000515086.1	RP11-35O7.1	RP11-35O7.1-001	NA	NA	NA	inter
CUST_18787_PI429285431	2.8057244	A	3.249488	P	0.735214130507409	0	lncRNA	20483-1_{1..1740}	lnc-RPS28-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RPS28-1:1	chr19	  8384187	  8385926	+	lnc-RPS28-1	lnc-RPS28-1:1	ENSG00000246974	AC010323.1	KANK3	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30chr19:8387468-8394444"	NA	inner
CUST_33020_PI429285431	1.348912	A	1.7157879	A	0.775459908202193	0	lncRNA	34636-1_{1..3000}	n339703|AL831863|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2148|NULL|-1.1734200|-0.3944559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339703|AL831863|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2148|NULL|-1.1734200|-0.3944559	chr3	179512749	179515748	-	NA	NA	NA	NA	PEX5L	NA	chr3:179518050-179525908	inner
CUST_43944_PI429285431	5.0590973	P	4.4327817	P	1.54361781571562	0	lncRNA	48654-1_{1..585}	"gi|410170441|ref|XR_171077.1| PREDICTED: Homo sapiens uncharacterized LOC101060091 (LOC101060091), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170441|ref|XR_171077.1| PREDICTED: Homo sapiens uncharacterized LOC101060091 (LOC101060091), misc_RNA"	Chr2	114588436	114589020	-	101060091	XR_171077.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0009565	0.90830994	A	1.4579387	A	0.683195908436161	0	lncRNA	TCONS_00026538	NA	NA	NA	NA	XLOC_012861	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012861), lincRNA [TCONS_00026538]"	chr18:59274102-59259816	hs|18q21.33	Agilent_HUMAN_G3V2	TCONS_00026538	TCONS_00026538	chr18	 59259816	 59274102	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_749_PI429285431	0.8999911	A	0.9041378	A	0.997129853355433	0	lncRNA	740-1_{1..1472}	"transcript_id ""ENST00000447433.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447433.1"" | genecode_v17"	chr2	 11264345	 11265816	-	ENSG00000145063.10	ENST00000447433.1	AC062028.1	AC062028.1-003	C2orf50	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70chr2:11254345-11282896"	NA	inter
CUST_24662_PI429285431	10.957444	P	10.853119	P	1.07499131191982	0	lncRNA	26210-2_{3001..5296}	lnc-SPNS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPNS1-1:1	chr16	 29004510	 29006805	+	lnc-SPNS1-1	lnc-SPNS1-1:1	ENSG00000261067.1	RP11-264B17.3	LAT	NA	chr16:28996147-29002104	inner
CUST_22967_PI429285431	6.66967	P	6.7283487	P	0.960143068953815	0	lncRNA	24541-1_{1..1903}	lnc-DEPTOR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DEPTOR-1:1	chr8	120885090	120886992	+	lnc-DEPTOR-1	lnc-DEPTOR-1:1	ENSG00000245330.2	KB-1471A8.1	DEPTOR	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80chr8:120885900-120896728"	NA	inner
CUST_22309_PI429285431	0.9154163	A	1.8927848	A	0.507905323343966	0	lncRNA	23908-1_{1..537}	lnc-SLC25A35-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A35-1:1	chr17	  8221884	  8222420	-	lnc-SLC25A35-1	lnc-SLC25A35-1:1	ENSG00000226871.1	AC135178.7	ARHGEF15	"hg19_refFlat_ARHGEF15:range=chr17:8215358-82243115'pad=0,hg19_refFlat_ARHGEF15:range=chr17:8215358-82243115'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90chr17:8213556-8225834"	NA	inner
CUST_5848_PI429285431	0.96354187	A	0.9077352	A	1.03944013447714	0	lncRNA	5777-1_{1..743}	"transcript_id ""ENST00000577557.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577557.1"" | genecode_v17"	chr17	 38681813	 38682555	+	ENSG00000266088.1	ENST00000577557.1	RP5-1028K7.2	RP5-1028K7.2-002	NA	NA	NA	inter
CUST_1607_PI429285431	0.92480063	A	1.3657012	A	0.736674612496133	0	lncRNA	1593-1_{1..697}	"transcript_id ""ENST00000444488.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444488.1"" | genecode_v17"	chr3	188659504	188660200	-	ENSG00000234076.1	ENST00000444488.1	TPRG1-AS1	TPRG1-AS1-001	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60"	NA	inter
CUST_31383_PI429285431	1.5950847	A	1.8906178	A	0.814771205152805	0	lncRNA	33161-1_{1..892}	n337849|AJ242730|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|232|NULL|3.8516900|-0.0315980	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337849|AJ242730|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|232|NULL|3.8516900|-0.0315980	chr1	 33832893	 33833784	-	NA	NA	NA	NA	PHC2	NA	chr1:33822893-33841194	inner
CUST_41174_PI429285431	0.91562635	A	0.92337066	A	0.994646435038821	0	lncRNA	42006-1_{1..77}	ENST00000401256 ncrna:miRNA chromosome:GRCh37:X:145075793:145075869:-1 gene:ENSG00000216075 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401256 ncrna:miRNA chromosome:GRCh37:X:145075793:145075869:-1 gene:ENSG00000216075 gene_biotype:miRNA transcript_biotype:miRNA	chrX	145075793	145075869	-	ENSG00000216075	ENST00000401256	NA	NA	NA	NA	NA	inter
LNCA_21_P0005195	5.277974	P	5.27953	P	0.998922044399049	0	lncRNA	AK055267	NA	AK055267	NA	Hs.489345	XLOC_006193	NA	NA	THC2521542	NA	"BROAD Institute lincRNA (XLOC_006193), lincRNA [TCONS_00012886]"	chr7:100264211-100264270	hs|7q22.1	Agilent_HUMAN_G3V2	AK055267	AK055267	chr7	100264211	100264270	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34242_PI429285431	0.91198146	A	0.9212175	A	0.993618513640472	0	lncRNA	35748-1_{1..717}	n341099|AF086184|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3565|NULL|1.4154300|-0.2621306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341099|AF086184|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3565|NULL|1.4154300|-0.2621306	chr11	 93800139	 93800855	+	NA	NA	NA	NA	PANX1	NA	chr11:93862094-93872566	inner
CUST_33832_PI429285431	1.5386727	A	2.197712	A	0.633299875104736	0	lncRNA	35380-1_{1..1186}	n340618|AK057818|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3080|NULL|2.4100700|-0.1442530	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340618|AK057818|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3080|NULL|2.4100700|-0.1442530	chr17	 30831584	 30832769	-	NA	NA	NA	NA	MYO1D	NA	chr17:30821584-30842662	inner
CUST_8587_PI429285431	8.356527	P	8.309629	P	1.033041348033	0	lncRNA	10143-1_{1..1815}	lnc-TBC1D22A-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TBC1D22A-4:1	chr22	 48250660	 48252474	+	lnc-TBC1D22A-4	lnc-TBC1D22A-4:1	ENSG00000224271	RP11-191L9.4	NA	NA	NA	inter
CUST_39190_PI429285431	0.95984393	A	0.9877112	A	0.980869241205712	0	lncRNA	40165-1_{1..1186}	n385944|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009wft.1||2.0171500|-0.1673075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385944|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009wft.1||2.0171500|-0.1673075	chr1	111016377	111017562	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47076_PI429285431	6.7353	P	7.087636	P	0.783314733697601	0	lncRNA	51160-1_{1..2097}	"gi|358438348|ref|NR_045574.1| Homo sapiens inositol-3-phosphate synthase 1 (ISYNA1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|358438348|ref|NR_045574.1| Homo sapiens inositol-3-phosphate synthase 1 (ISYNA1), transcript variant 6, non-coding RNA"	Chr19	 18545198	 18547294	-	51477	NR_045574.1	NA	NA	NA	NA	NA	inter
CUST_11587_PI429285431	3.9880412	P	4.4480343	P	0.726989735636951	0	lncRNA	13166-1_{1..307}	lnc-SMARCAL1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMARCAL1-2:4	chr2	217393993	217394299	+	lnc-SMARCAL1-2	lnc-SMARCAL1-2:4	XLOC_001856	linc-IGFBP2-3	NA	NA	NA	inter
LNCA_21_P0007672	0.9262982	A	0.92301565	A	1.00227788071476	0	lncRNA	TCONS_00020658	NA	NA	NA	NA	XLOC_009958	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009958), lincRNA [TCONS_00020658]"	chr12:131943374-131943433	hs|12q24.33	Agilent_HUMAN_G3V2	TCONS_00020658	TCONS_00020658	chr12	131943374	131943433	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15175_PI429285431	5.8006206	P	5.6697454	P	1.09495774763056	0	lncRNA	16839-1_{1..829}	lnc-RP11-1070N10.3.1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-1070N10.3.1-1:6	chr14	 95800361	 95801189	+	lnc-RP11-1070N10.3.1-1	lnc-RP11-1070N10.3.1-1:6	XLOC_010915	linc-GLRX5-2	NA	NA	NA	inter
CUST_13496_PI429285431	5.168198	P	4.674886	P	1.407672768426	0	lncRNA	15136-1_{1..387}	lnc-PIK3R1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIK3R1-1:4	chr5	 67494018	 67494404	+	lnc-PIK3R1-1	lnc-PIK3R1-1:4	XLOC_004412	linc-PIK3R1-1	NA	NA	NA	inter
CUST_27064_PI429285431	1.066921	A	0.92640096	A	1.10230238488489	0	lncRNA	28597-1_{1..394}	n324174|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327123|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327123|-1.1339600|-0.2250616	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324174|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327123|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327123|-1.1339600|-0.2250616	chr7	158076081	158076474	+	NA	NA	NA	NA	PTPRN2	NA	chr7:158066081-158086573	inner
CUST_42142_PI429285431	3.6938155	P	2.4773061	A	2.32383784099305	0	lncRNA	44164-1_{1..66}	ENST00000580906 ncrna:miRNA chromosome:GRCh37:10:112657848:112657913:1 gene:ENSG00000265827 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580906 ncrna:miRNA chromosome:GRCh37:10:112657848:112657913:1 gene:ENSG00000265827 gene_biotype:miRNA transcript_biotype:miRNA	chr10	112657848	112657913	+	ENSG00000265827	ENST00000580906	NA	NA	BBIP1	NA	chr10:112658488-112667913	inner
CUST_20351_PI429285431	4.796577	P	4.9769354	P	0.882483738961583	0	lncRNA	21993-1_{1..629}	lnc-PPP1R14D-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP1R14D-1:4	chr15	 41136377	 41137005	-	lnc-PPP1R14D-1	lnc-PPP1R14D-1:4	ENSG00000261183.1	RP11-532F12.5	SPINT1	NA	chr15:41136246-41146482	inner
CUST_10133_PI429285431	1.2451055	A	1.1727668	A	1.05141972081863	0	lncRNA	11656-1_{1..3000}	lnc-VSTM2B-6:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VSTM2B-6:5	chr19	 29461311	 29464310	+	lnc-VSTM2B-6	lnc-VSTM2B-6:5	XLOC_013027	linc-VSTM2B-6	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
CUST_34018_PI429285431	0.9184651	A	1.106111	A	0.878037279633963	0	lncRNA	35552-1_{1..3000}	n340834|BX648926|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3298|NULL|0.0914702|-0.1962872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340834|BX648926|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3298|NULL|0.0914702|-0.1962872	chr17	 72296760	 72299759	-	NA	NA	NA	NA	DNAI2	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.24;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_DNAI2:range=chr17:72277957-723103555'pad=0,hg19_refFlat_DNAI2:range=chr17:72277957-723103555'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60chr17:72286760-72311023"	NA	inner
CUST_22678_PI429285431	3.4080873	P	3.5197806	P	0.925501157788405	0	lncRNA	24261-1_{1..311}	lnc-P2RX3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-P2RX3-1:1	chr11	 57095217	 57095527	+	lnc-P2RX3-1	lnc-P2RX3-1:1	ENSG00000254662.1	RP11-872D17.4	SSRP1	"hg19_refFlat_SSRP1:range=chr11:57093881-571025955'pad=0,hg19_refFlat_SSRP1:range=chr11:57093881-571025955'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30chr11:57093459-57103351"	NA	inner
CUST_41183_PI429285431	10.879777	P	11.546402	P	0.629978719183576	0	lncRNA	42032-1_{1..109}	ENST00000385031 ncrna:miRNA chromosome:GRCh37:14:23502739:23502847:-1 gene:ENSG00000207765 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385031 ncrna:miRNA chromosome:GRCh37:14:23502739:23502847:-1 gene:ENSG00000207765 gene_biotype:miRNA transcript_biotype:miRNA	chr14	 23502739	 23502847	-	ENSG00000207765	ENST00000385031	NA	NA	PSMB11	NA	chr14:23511376-23512847	inner
CUST_48013_PI429285431	0.9270533	A	0.9097131	A	1.01209183291996	0	lncRNA	51897-1_{1..3000}	"gi|410173437|ref|XR_172215.1| PREDICTED: Homo sapiens uncharacterized LOC645460 (FLJ44342), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|410173437|ref|XR_172215.1| PREDICTED: Homo sapiens uncharacterized LOC645460 (FLJ44342), misc_RNA"	NA	NA	NA	NA	NA	XR_172215.1	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40"	NA	Unknown
CUST_17417_PI429285431	2.4185588	A	2.5205836	A	0.931724412777796	0	lncRNA	19142-1_{1..1671}	lnc-RPLP1-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPLP1-1:13	chr15	 69863079	 69864749	+	lnc-RPLP1-1	lnc-RPLP1-1:13	XLOC_011294	linc-LRRC49-4	NA	NA	NA	inter
CUST_24908_PI429285431	6.1308556	P	5.751232	P	1.3010023788594	0	lncRNA	26449-1_{1..311}	lnc-PADI4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PADI4-2:1	chr1	 17733813	 17734123	+	lnc-PADI4-2	lnc-PADI4-2:1	ENSG00000227751.1	RP1-20B21.4	RCC2	NA	chr1:17733251-17743878	inner
CUST_22207_PI429285431	6.658947	P	6.849844	P	0.876060858463229	0	lncRNA	23806-1_{1..554}	lnc-USP8-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP8-2:5	chr15	 50648297	 50648850	+	lnc-USP8-2	lnc-USP8-2:5	ENSG00000244879.2	CTD-3110H11.2	GABPB1	NA	chr15:50638297-50647605	inter
CUST_14473_PI429285431	0.9067562	A	0.9114295	A	0.996765956103469	0	lncRNA	16136-1_{1..495}	lnc-RAB1A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RAB1A-2:2	chr2	 65264537	 65265031	-	lnc-RAB1A-2	lnc-RAB1A-2:2	XLOC_002132	linc-SERTAD2-3	NA	NA	NA	inter
CUST_47727_PI429285431	3.6582067	P	3.5295198	P	1.09329815937819	0	lncRNA	51683-1_{1..3000}	"gi|385137068|ref|NR_047606.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 36, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137068|ref|NR_047606.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 36, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047606.1	NA	NA	NA	NA	NA	inter
CUST_22003_PI429285431	5.2312856	P	5.5641885	P	0.79393736476326	0	lncRNA	23612-1_{1..461}	lnc-PNRC2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PNRC2-2:1	chr1	 24409765	 24410225	+	lnc-PNRC2-2	lnc-PNRC2-2:1	ENSG00000230703.1	RP11-293P20.4	MYOM3	"hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0,hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20chr1:24399765-24420055"	NA	inner
CUST_1535_PI429285431	3.0927103	A	2.3121302	A	1.71782146089498	0	lncRNA	1522-1_{1..1948}	"transcript_id ""ENST00000472120.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000472120.1"" | genecode_v17"	chr3	164867794	164869741	-	ENSG00000239205.1	ENST00000472120.1	RP11-747D18.1	RP11-747D18.1-001	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70"	NA	inter
CUST_888_PI429285431	0.90070844	A	0.8934412	A	1.00504997527495	0	lncRNA	877-1_{1..682}	"transcript_id ""ENST00000449448.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449448.2"" | genecode_v17"	chr2	 58655520	 58656201	+	ENSG00000233723.3	ENST00000449448.2	AC007092.1	AC007092.1-008	NA	NA	NA	inter
CUST_21261_PI429285431	0.90764105	A	0.90672475	A	1.0006353324998	0	lncRNA	22886-1_{1..289}	lnc-BOD1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BOD1-3:1	chr5	173483502	173483790	-	lnc-BOD1-3	lnc-BOD1-3:1	ENSG00000253244.1	RP11-619L12.3	HMP19	NA	chr5:173473502-173493588	inner
CUST_7630_PI429285431	0.9224333	A	0.9092312	A	1.00919299678959	0	lncRNA	9262-1_{1..2076}	lnc-ZCCHC9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZCCHC9-1:1	chr5	 80702729	 80704804	+	lnc-ZCCHC9-1	lnc-ZCCHC9-1:1	ENSG00000249445	ENST00000512252	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70"	NA	inter
CUST_48726_PI429285431	5.611948	P	5.5114875	P	1.07211562109602	0	lncRNA	52567-1_{1..1087}	hg19_lincRNAsTranscripts_TCONS_l2_00013983 range=chr2:130958857-130962255 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013983 range=chr2:130958857-130962255 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	130958857	130959943	+	NA	NA	NA	NA	TUBA3E	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-20.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50chr2:130949318-130956034"	NA	inter
CUST_5088_PI429285431	1.1484733	A	0.9837346	A	1.12096303153631	0	lncRNA	5028-1_{1..530}	"transcript_id ""ENST00000556397.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556397.1"" | genecode_v17"	chr15	 20549989	 20550518	+	ENSG00000258654.1	ENST00000556397.1	RP11-509A17.3	RP11-509A17.3-002	NA	NA	NA	inter
CUST_28040_PI429285431	8.833087	P	5.521456	P	9.9288800847503	0	lncRNA	29656-1_{1..900}	n325303|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324929|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324929|-0.0986759|-0.3898811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325303|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324929|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324929|-0.0986759|-0.3898811	chr2	 56043829	 56044728	-	NA	NA	NA	NA	EFEMP1	NA	chr2:56093097-56137965	inner
CUST_7656_PI429285431	1.3558527	A	1.1229994	A	1.17515682688486	0	lncRNA	9288-1_{1..2903}	lnc-CIB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CIB1-1:1	chr15	 90820109	 90823011	-	lnc-CIB1-1	lnc-CIB1-1:1	ENSG00000246567	ENST00000500321	NGRN	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10chr15:90810109-90815443"	NA	inter
CUST_18128_PI429285431	4.68933	P	5.0216937	P	0.794234150309301	0	lncRNA	19863-1_{1..847}	lnc-NPHP4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NPHP4-1:2	chr1	  5728201	  5729047	-	lnc-NPHP4-1	lnc-NPHP4-1:2	XLOC_000688	linc-C1orf174-1	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20"	NA	inter
CUST_30186_PI429285431	0.9101448	A	0.8984778	A	1.00811973584535	0	lncRNA	31960-1_{1..215}	n334887|AJ459835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248092_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248092_08|-1.0787600|-0.1311561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334887|AJ459835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248092_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248092_08|-1.0787600|-0.1311561	chr6	   729098	   729312	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43980_PI429285431	2.290062	A	2.1946986	A	1.06833447659386	0	lncRNA	48680-1_{1..1437}	"gi|254826741|ref|NR_027020.2| Homo sapiens ankyrin repeat domain 30B-like (ANKRD30BL), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254826741|ref|NR_027020.2| Homo sapiens ankyrin repeat domain 30B-like (ANKRD30BL), transcript variant 2, non-coding RNA"	Chr2	132905164	132906600	-	554226	NR_027020.2	NA	NA	NA	NA	NA	inter
CUST_20401_PI429285431	0.8929772	A	0.8875034	A	1.0038013559322	0	lncRNA	22042-1_{1..2379}	lnc-BRD1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BRD1-4:1	chr22	 49968993	 49971371	-	lnc-BRD1-4	lnc-BRD1-4:1	ENSG00000213279.2	RP1-29C18.9	NA	NA	NA	inter
CUST_35926_PI429285431	5.959278	P	5.7868977	P	1.12691624883518	0	lncRNA	37292-1_{1..1005}	n344567|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_115|NULL|-1.3938000|-0.2229043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344567|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_115|NULL|-1.3938000|-0.2229043	chr1	211556161	211557165	+	NA	NA	NA	NA	RD3	NA	chr1:211615616-211615911	inter
CUST_8618_PI429285431	7.6576796	P	6.5583124	P	2.14260692111003	0	lncRNA	10171-1_{1..1926}	lnc-ENDOD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENDOD1-1:1	chr11	 94891773	 94893698	+	lnc-ENDOD1-1	lnc-ENDOD1-1:1	ENSG00000245552	XLOC_009255	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-56.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.41;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
CUST_35168_PI429285431	1.4134775	A	1.2867823	A	1.09178985755806	0	lncRNA	36569-1_{1..535}	n342145|AL110111|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4631|NULL|-1.2861700|-0.3325761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342145|AL110111|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4631|NULL|-1.2861700|-0.3325761	chr6	142635264	142635798	+	NA	NA	NA	NA	GPR126	NA	chr6:142625264-142645798	inner
CUST_22817_PI429285431	9.384416	P	9.497136	P	0.924842755298085	0	lncRNA	24397-1_{1..578}	lnc-TRAPPC2L-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRAPPC2L-1:3	chr16	 88949923	 88950500	+	lnc-TRAPPC2L-1	lnc-TRAPPC2L-1:3	ENSG00000259881.1	RP11-830F9.5	CBFA2T3	NA	chr16:88941263-88960334	inner
CUST_2037_PI429285431	2.0996873	A	1.6200125	A	1.39442931057093	0	lncRNA	2028-1_{1..490}	"transcript_id ""ENST00000513419.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513419.1"" | genecode_v17"	chr5	  1939886	  1940375	+	ENSG00000248994.1	ENST00000513419.1	RP11-259O2.1	RP11-259O2.1-002	NA	NA	NA	inter
CUST_22501_PI429285431	0.9010966	A	0.8938788	A	1.0050155336099	0	lncRNA	24088-1_{1..1816}	lnc-MMRN1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MMRN1-2:6	chr4	 90613566	 90615381	+	lnc-MMRN1-2	lnc-MMRN1-2:6	ENSG00000251095.1	RP11-115D19.1	NA	NA	NA	inter
CUST_19445_PI429285431	1.9321781	A	2.884746	A	0.516711930488631	0	lncRNA	21104-1_{1..1768}	lnc-RP11-688I9.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RP11-688I9.2.1-2:1	chr11	126875762	126877529	+	lnc-RP11-688I9.2.1-2	lnc-RP11-688I9.2.1-2:1	ENSG00000218109.3	KIRREL3-AS3	KIRREL3	NA	chr11:126865762-126870766	inter
CUST_51398_PI429285431	0.8925772	A	1.2788012	A	0.765129577868522	0	lncRNA	54980-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00009671 range=chr16:31711933-31724203 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009671 range=chr16:31711933-31724203 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 31714933	 31717932	+	NA	NA	NA	NA	ZNF720	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr16:31724550-31734203"	NA	inter
CUST_21904_PI429285431	8.974512	P	9.59005	P	0.652686452773447	0	lncRNA	23513-1_{1..718}	lnc-GLUD1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLUD1-3:1	chr10	 88729020	 88729737	-	lnc-GLUD1-3	lnc-GLUD1-3:1	ENSG00000233165.1	RP11-96C23.8	AGAP11	NA	chr10:88730498-88739158	inner
CUST_4552_PI429285431	3.885418	P	2.492379	A	2.62631324633196	0	lncRNA	4500-1_{1..1059}	"transcript_id ""ENST00000443554.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443554.1"" | genecode_v17"	chr13	 19982182	 19983240	-	ENSG00000229791.1	ENST00000443554.1	RP11-385E5.5	RP11-385E5.5-001	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20"	NA	inter
CUST_12445_PI429285431	6.880319	P	7.638495	P	0.591243367635798	0	lncRNA	14058-1_{1..301}	lnc-QSOX2-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-QSOX2-1:10	chr9	139166729	139167029	-	lnc-QSOX2-1	lnc-QSOX2-1:10	XLOC_007895	linc-QSOX2	NA	NA	NA	inter
CUST_44010_PI429285431	7.0272717	P	4.986989	P	4.11326123233698	0	lncRNA	48700-2_{3001..4078}	"gi|371119043|ref|NR_045774.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 13, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371119043|ref|NR_045774.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 13, non-coding RNA"	Chr2	175939978	175941055	-	1386	NR_045774.1	NA	NA	NA	NA	NA	inter
CUST_47732_PI429285431	3.9546313	P	3.9977927	P	0.970525887126508	0	lncRNA	51686-1_{1..3000}	"gi|385137099|ref|NR_047637.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 67, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137099|ref|NR_047637.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 67, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047637.1	NA	NA	NA	NA	NA	inter
CUST_22308_PI429285431	3.2961547	P	4.3251476	P	0.49005211938054	0	lncRNA	23907-1_{1..2091}	lnc-AC127496.3-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC127496.3-5:2	chr17	 78943514	 78945604	-	lnc-AC127496.3-5	lnc-AC127496.3-5:2	ENSG00000261924.1	CTD-2561B21.5	RPTOR	NA	chr17:78933514-78940173	inter
CUST_31703_PI429285431	2.1746511	A	2.3361979	A	0.894065975039246	0	lncRNA	33447-1_{1..699}	n338233|AJ243662|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|625|NULL|-0.6427100|-0.1510680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338233|AJ243662|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|625|NULL|-0.6427100|-0.1510680	chr1	152486977	152487675	+	NA	NA	NA	NA	CRCT1	NA	chr1:152486978-152488481	inner
CUST_50970_PI429285431	1.0817184	A	1.1193774	A	0.974234514507599	0	lncRNA	54611-1_{1..1482}	hg19_lincRNAsTranscripts_TCONS_l2_00005792 range=chr12:80799677-80815204 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005792 range=chr12:80799677-80815204 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 80799677	 80801158	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34392_PI429285431	5.9754596	P	6.2045736	P	0.853158679891627	0	lncRNA	35876-1_{1..1952}	n341262|AK129997|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3730|NULL|-0.9583150|-0.4217670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341262|AK129997|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3730|NULL|-0.9583150|-0.4217670	chr7	 78802388	 78804339	-	NA	NA	NA	NA	MAGI2	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40chr7:78792388-78814340"	NA	inner
CUST_25551_PI429285431	0.9050725	A	0.90482116	A	1.00017423078878	0	lncRNA	27080-1_{1..2840}	lnc-BHLHE22-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BHLHE22-1:2	chr8	 65294160	 65296999	+	lnc-BHLHE22-1	lnc-BHLHE22-1:2	ENSG00000254377.1	RP11-32K4.2	NA	NA	NA	inter
CUST_6816_PI429285431	2.6730528	A	2.4590974	A	1.15986379749927	0	lncRNA	6764-1_{1..2007}	"transcript_id ""ENST00000416218.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416218.1"" | genecode_v17"	chr21	 25676863	 25678869	-	ENSG00000224832.1	ENST00000416218.1	AP000469.2	AP000469.2-001	NA	NA	NA	inter
CUST_39919_PI429285431	8.317815	P	8.7167015	P	0.75844343875785	0	lncRNA	40797-1_{1..1048}	n406781|NR_024232|lncRNA|Homosapiens||RefGeneNoncode|NR_024232||3.5179800|-0.1547062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406781|NR_024232|lncRNA|Homosapiens||RefGeneNoncode|NR_024232||3.5179800|-0.1547062	chr18	 21594383	 21595430	+	NA	NA	NA	NA	TTC39C	NA	chr18:21584383-21610252	inner
CUST_2148_PI429285431	0.90018165	A	0.9048712	A	0.996754728952125	0	lncRNA	2139-1_{1..449}	"transcript_id ""ENST00000505050.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505050.1"" | genecode_v17"	chr5	 44698533	 44698981	-	ENSG00000250418.1	ENST00000505050.1	RP11-503D12.1	RP11-503D12.1-001	NA	NA	NA	inter
CUST_45993_PI429285431	6.646602	P	6.615485	P	1.02180294575445	0	lncRNA	50282-1_{1..1603}	"gi|324711031|ref|NR_037918.1| Homo sapiens PRH1-PRR4 readthrough (PRH1-PRR4), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|324711031|ref|NR_037918.1| Homo sapiens PRH1-PRR4 readthrough (PRH1-PRR4), non-coding RNA"	NW_003571050.1	    44555	    46157	-	100533464	NR_037918.1	NA	NA	NA	"hg19_refFlat_LOC100129361:range=chr12:11323956-113241625'pad=0,hg19_refFlat_LOC100129361:range=chr12:11323956-113241625'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20"	NA	Unknown
CUST_32968_PI429285431	5.8559017	P	6.1687407	P	0.805055974195168	0	lncRNA	34585-1_{1..1928}	n339644|AK124913|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2088|NULL|-1.1991500|-0.4554933	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339644|AK124913|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2088|NULL|-1.1991500|-0.4554933	chr3	151152536	151154463	+	NA	NA	NA	NA	MED12L	NA	chr3:151142536-151154465	inner
CUST_20918_PI429285431	0.908612	A	0.90070844	A	1.00549336382226	0	lncRNA	22549-1_{1..346}	lnc-ATR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATR-1:1	chr3	142375400	142375745	-	lnc-ATR-1	lnc-ATR-1:1	ENSG00000239641.1	PLS1-AS1	PLS1	NA	chr3:142365400-142385587	inner
CUST_37267_PI429285431	0.90658534	A	0.90299404	A	1.00249240034794	0	lncRNA	38375-1_{1..2089}	n345706|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1255|NULL|-1.3016500|-0.2899679	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n345706|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1255|NULL|-1.3016500|-0.2899679	chr5	  7271518	  7273606	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8516_PI429285431	9.983513	P	9.886165	P	1.06980511003829	0	lncRNA	10078-1_{1..419}	lnc-FAM82A2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM82A2-2:2	chr15	 40987210	 40987628	-	lnc-FAM82A2-2	lnc-FAM82A2-2:2	ENSG00000245849	CTD-2339L15.1	RAD51	NA	chr15:40987327-40997296	inter
CUST_16319_PI429285431	3.9185388	P	3.7082753	P	1.15689946568234	0	lncRNA	18025-1_{1..3000}	lnc-NAP1L2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NAP1L2-1:7	chrX	 73061217	 73064216	-	lnc-NAP1L2-1	lnc-NAP1L2-1:7	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70"	NA	inter
LNCA_21_P0005611	7.2220364	P	7.4856052	P	0.833024712320927	0	lncRNA	TCONS_00014425	NA	NA	NA	NA	XLOC_006625	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006625), lincRNA [TCONS_00014425]"	chr7:141214371-141213000	hs|7q34	Agilent_HUMAN_G3V2	TCONS_00014425	TCONS_00014425	chr7	141213000	141214371	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35487_PI429285431	7.7002654	P	7.3107195	P	1.30998101178014	0	lncRNA	36894-1_{1..2630}	n342584|AX747265|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5083|NULL|2.7880900|-0.1771254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342584|AX747265|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5083|NULL|2.7880900|-0.1771254	chr10	  5680830	  5683459	-	NA	NA	NA	NA	ASB13	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10chr10:5680820-5708558"	NA	inter
CUST_28080_PI429285431	0.89882463	A	0.90208244	A	0.997744405867893	0	lncRNA	29700-1_{1..597}	n325349|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325407|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325407|-0.7731990|-0.2351987	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325349|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325407|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325407|-0.7731990|-0.2351987	chr2	 34145796	 34146392	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6130_PI429285431	0.897641	A	1.0105563	A	0.924717566287235	0	lncRNA	6056-1_{1..555}	"transcript_id ""ENST00000583148.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583148.1"" | genecode_v17"	chr18	 24805706	 24806260	+	ENSG00000265374.1	ENST00000583148.1	RP11-57J16.1	RP11-57J16.1-001	NA	NA	NA	inter
CUST_45875_PI429285431	0.9064463	A	2.1246083	A	0.429829974871034	0	lncRNA	50200-2_{3001..6000}	"gi|281182595|ref|NR_033149.1| Homo sapiens transmembrane protein 135 (TMEM135), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|281182595|ref|NR_033149.1| Homo sapiens transmembrane protein 135 (TMEM135), transcript variant 3, non-coding RNA"	Chr11	 86751886	 86754885	+	65084	NR_033149.1	NA	NA	NA	NA	NA	inter
CUST_2068_PI429285431	1.0520033	A	0.9064182	A	1.10617918485046	0	lncRNA	2059-1_{1..553}	"transcript_id ""ENST00000510622.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510622.1"" | genecode_v17"	chr5	  6868672	  6869224	+	ENSG00000250060.1	ENST00000510622.1	RP11-332J15.2	RP11-332J15.2-001	NA	NA	NA	inter
CUST_15234_PI429285431	2.888429	A	2.9596915	A	0.951804710793921	0	lncRNA	16905-1_{1..1241}	lnc-SRL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRL-2:1	chr16	  4303648	  4304888	-	lnc-SRL-2	lnc-SRL-2:1	XLOC_011867	linc-SRL	TFAP4	NA	chr16:4307187-4313792	inter
CUST_20384_PI429285431	4.3211703	P	3.4757438	A	1.79679584911581	0	lncRNA	22026-1_{1..308}	lnc-DUOXA1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DUOXA1-2:1	chr15	 45492523	 45492830	-	lnc-DUOXA1-2	lnc-DUOXA1-2:1	ENSG00000260035.1	CTD-2651B20.6	SHF	NA	chr15:45482523-45493373	inner
CUST_25020_PI429285431	4.1591816	P	4.138719	P	1.01428465791273	0	lncRNA	26560-1_{1..483}	lnc-SLC45A4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC45A4-2:2	chr8	142138166	142138648	-	lnc-SLC45A4-2	lnc-SLC45A4-2:2	ENSG00000253210.1	RP11-809O17.1	DENND3	NA	chr8:142138720-142148220	inter
CUST_20886_PI429285431	7.4213457	P	8.10002	P	0.62473908677713	0	lncRNA	22518-1_{1..860}	lnc-HSFY2-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSFY2-3:4	chrY	 21237827	 21238686	-	lnc-HSFY2-3	lnc-HSFY2-3:4	ENSG00000176728.3	TTTY14	NA	NA	NA	inter
CUST_29023_PI429285431	0.90526146	A	0.8988856	A	1.00442918937425	0	lncRNA	30751-1_{1..861}	n326512|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029474|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029474|-1.1861300|-0.3471859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326512|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029474|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029474|-1.1861300|-0.3471859	chr1	 96227950	 96228810	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007181	4.450208	P	4.4650407	P	0.98977142714243	0	lncRNA	TCONS_00019244	NA	NA	NA	NA	XLOC_009075	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009075), lincRNA [TCONS_00019244]"	chr11:15948887-15952330	hs|11p15.2	Agilent_HUMAN_G3V2	TCONS_00019244	TCONS_00019244	chr11	 15948887	 15952330	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002900	2.643671	A	2.167438	A	1.39110662186907	0	lncRNA	ENST00000497285	NA	NA	NA	NA	XLOC_003310	NA	ENST00000497285	NA	NA	"BROAD Institute lincRNA (XLOC_003310), lincRNA [TCONS_00005865]"	chr3:161534759-161534700	hs|3q26.1	Agilent_HUMAN_G3V2	ENST00000497285	ENST00000497285	chr3	161534700	161534759	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17988_PI429285431	0.9121168	A	0.9112003	A	1.00063547121732	0	lncRNA	19721-1_{1..285}	lnc-PCDH20-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH20-2:1	chr13	 63148448	 63148732	-	lnc-PCDH20-2	lnc-PCDH20-2:1	XLOC_010636	linc-PCDH20-2	NA	NA	NA	inter
LNCA_21_P0001642	2.5747151	A	1.6975536	A	1.83675792578159	0	lncRNA	TCONS_00001874	NA	NA	NA	NA	XLOC_001259	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001259), lincRNA [TCONS_00001874]"	chr1:232877080-232877021	hs|1q42.2	Agilent_HUMAN_G3V2	TCONS_00001874	TCONS_00001874	chr1	232877021	232877080	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13497_PI429285431	5.1038275	P	5.436574	P	0.794023438764484	0	lncRNA	15137-1_{1..334}	lnc-FBXO32-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXO32-1:1	chr8	124573864	124574197	-	lnc-FBXO32-1	lnc-FBXO32-1:1	XLOC_007202	linc-FBXO32	NA	NA	NA	inter
CUST_46727_PI429285431	6.9429007	P	7.682174	P	0.599041019312186	0	lncRNA	50880-1_{1..3000}	"gi|378744179|ref|NR_046388.1| Homo sapiens proline, glutamate and leucine rich protein 1 (PELP1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378744179|ref|NR_046388.1| Homo sapiens proline, glutamate and leucine rich protein 1 (PELP1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_046388.1	NA	NA	NA	NA	NA	Unknown
CUST_47131_PI429285431	1.5127113	A	2.0262659	A	0.700494389123586	0	lncRNA	51212-2_{3001..3484}	"gi|338968911|ref|NR_040109.1| Homo sapiens uncharacterized LOC100505495 (LOC100505495), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|338968911|ref|NR_040109.1| Homo sapiens uncharacterized LOC100505495 (LOC100505495), non-coding RNA"	Chr19	 41963074	 41963557	-	100505495	NR_040109.1	NA	NA	NA	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10"	NA	inter
CUST_17855_PI429285431	2.0820906	A	1.9184617	A	1.12010105699134	0	lncRNA	19590-1_{1..267}	lnc-HTR1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HTR1B-1:1	chr6	 78078603	 78078869	-	lnc-HTR1B-1	lnc-HTR1B-1:1	XLOC_005769	linc-IMPG1-2	NA	NA	NA	inter
CUST_32115_PI429285431	3.2121446	P	2.225328	A	1.98180717685811	0	lncRNA	33817-1_{1..3000}	n338680|D87119|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1096|NULL|2.3480000|-0.2070465	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n338680|D87119|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1096|NULL|2.3480000|-0.2070465	chr2	 12857207	 12860206	+	NA	NA	NA	NA	TRIB2	NA	chr2:12856998-12882860	inter
CUST_8018_PI429285431	3.5573537	A	3.4178643	P	1.10151519757495	0	lncRNA	9630-1_{1..579}	lnc-CMPK2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CMPK2-2:4	chr2	  7058416	  7058994	-	lnc-CMPK2-2	lnc-CMPK2-2:4	ENSG00000228203	AC017076.4	RNF144A	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70chr2:7057523-7068798"	NA	inner
CUST_30315_PI429285431	8.044382	P	7.996004	P	1.03410164534989	0	lncRNA	32091-1_{1..218}	n335225|AY539999|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255294|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255294|0.3892380|-0.2349423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335225|AY539999|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255294|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255294|0.3892380|-0.2349423	chrX	 10417430	 10417647	-	NA	NA	NA	NA	MID1	NA	chrX:10413350-10479481	inner
CUST_30690_PI429285431	0.8970034	A	0.9065404	A	0.99341125692279	0	lncRNA	32472-1_{1..201}	n336180|X92785|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324587|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324587|-1.0910300|-0.0787009	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336180|X92785|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324587|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324587|-1.0910300|-0.0787009	chr14	 22409727	 22409927	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16325_PI429285431	0.89804494	A	0.9020017	A	0.997261140500009	0	lncRNA	18026-1_{1..1237}	lnc-FAM19A5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM19A5-2:1	chr22	 48864133	 48865369	+	lnc-FAM19A5-2	lnc-FAM19A5-2:1	XLOC_014279	linc-FAM19A5-1	NA	NA	NA	inter
LNCA_21_P0000938	0.91589934	A	0.9211528	A	0.996365200946031	0	lncRNA	ENST00000522481	NA	NA	NA	NA	XLOC_000004	NA	ENST00000522481	NA	NA	"BROAD Institute lincRNA (XLOC_000004), lincRNA [TCONS_00000122]"	chr8:22665-28955	hs|8p23.3	Agilent_HUMAN_G3V2	ENST00000522481	ENST00000522481	chr8	    22665	    28955	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13407_PI429285431	5.195266	P	4.775468	P	1.33774023699623	0	lncRNA	15044-1_{1..348}	lnc-WDR53-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR53-1:2	chr3	196359259	196359606	-	lnc-WDR53-1	lnc-WDR53-1:2	XLOC_003399	linc-WDR53-1	LRRC33	NA	chr3:196366656-196369458	inter
CUST_11615_PI429285431	0.8940097	A	0.89892614	A	0.996597983492005	0	lncRNA	13195-1_{1..568}	lnc-KIAA1147-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1147-3:5	chr7	141215475	141216042	-	lnc-KIAA1147-3	lnc-KIAA1147-3:5	XLOC_006625	linc-MRPS33-2	NA	NA	NA	inter
CUST_34461_PI429285431	16.600258	P	16.561195	P	1.02744630520446	0	lncRNA	35934-2_{3001..3310}	n341336|BX537891|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3805|NULL|3.3123800|-0.2442902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341336|BX537891|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3805|NULL|3.3123800|-0.2442902	chr7	137668745	137669054	-	NA	NA	NA	NA	CREB3L2	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50chr7:137655745-137678441"	NA	inner
CUST_27369_PI429285431	1.6680104	A	2.78004	A	0.462642721808402	0	lncRNA	28932-1_{1..735}	n324531|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040405|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040405|0.7253060|-0.2415616	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324531|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040405|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040405|0.7253060|-0.2415616	chr6	 37619306	 37620040	-	NA	NA	NA	NA	MDGA1	NA	chr6:37609306-37632509	inner
CUST_39393_PI429285431	3.8710022	P	5.779871	P	0.266301267426817	0	lncRNA	40356-1_{1..496}	n386558|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010nxy.1||-0.8379050|-0.1247979	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386558|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010nxy.1||-0.8379050|-0.1247979	chr1	   852952	   853447	-	NA	NA	NA	NA	SAMD11	NA	chr1:861121-864817	inter
CUST_28909_PI429285431	1.2331488	A	0.90606546	A	1.2544746695232	0	lncRNA	30626-1_{1..388}	n326334|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000087600|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000087600|1.3949500|-0.3657650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326334|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000087600|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000087600|1.3949500|-0.3657650	chr1	168507531	168507918	-	NA	NA	NA	NA	XCL1	NA	chr1:168511969-168529973	inner
CUST_36453_PI429285431	0.8987675	A	0.9031147	A	0.99699128585626	0	lncRNA	37664-1_{1..1605}	n344964|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_513|NULL|-1.3242100|-0.2809802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344964|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_513|NULL|-1.3242100|-0.2809802	chr7	105529971	105531575	-	NA	NA	NA	NA	NA	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_169_PI429285431	0.90115166	A	0.90277004	A	0.998878853420896	0	lncRNA	160-1_{1..475}	"transcript_id ""ENST00000457856.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457856.1"" | genecode_v17"	chr1	 17199534	 17200008	+	ENSG00000228549.1	ENST00000457856.1	RP11-108M9.3	RP11-108M9.3-004	NA	NA	NA	inter
LNCA_21_P0014607	5.114029	P	5.414784	P	0.81182743466659	0	lncRNA	XR_110501	XR_110501	XR_110501	NA	NA	LOC100286988	uncharacterized LOC100286988	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100286988 (LOC100286988), miscRNA [XR_110501]"	chr1:40839876-40839817	hs|1p34.2	Agilent_HUMAN_G3V2	XR_110501	XR_110501	chr1	 40839817	 40839876	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35432_PI429285431	5.076363	P	4.61267	P	1.37906743031399	0	lncRNA	36839-1_{1..3000}	n342494|D42053|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4988|NULL|14.4542000|-0.2019499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342494|D42053|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4988|NULL|14.4542000|-0.2019499	chr16	 84087370	 84090369	-	NA	NA	NA	NA	MBTPS1	NA	chr16:84087368-84150517	inner
CUST_37927_PI429285431	0.91537017	A	1.1516231	A	0.848947397880203	0	lncRNA	39015-1_{1..395}	n346468|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2018|NULL|-1.3639200|-0.2839249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346468|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2018|NULL|-1.3639200|-0.2839249	chr13	 56090831	 56091225	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008099	4.6909156	P	4.5298553	P	1.11810858332209	0	lncRNA	TCONS_00021866	NA	NA	NA	NA	XLOC_010463	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010463), lincRNA [TCONS_00021866]"	chr13:88338299-88338358	hs|13q31.2	Agilent_HUMAN_G3V2	TCONS_00021866	TCONS_00021866	chr13	 88338299	 88338358	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1680_PI429285431	3.9412029	P	3.8076777	P	1.09697085816589	0	lncRNA	1664-1_{1..1416}	"transcript_id ""ENST00000509015.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509015.1"" | genecode_v17"	chr4	  4323689	  4325104	+	ENSG00000248516.1	ENST00000509015.1	RP11-265O12.1	RP11-265O12.1-001	ZBTB49	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50chr4:4313689-4323513"	NA	inter
CUST_8510_PI429285431	0.9190955	A	0.9179965	A	1.00076205897094	0	lncRNA	10073-1_{1..580}	lnc-KIAA1147-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1147-2:5	chr7	141437998	141438577	-	lnc-KIAA1147-2	lnc-KIAA1147-2:5	ENSG00000228775	RP5-894A10.5	WEE2	"hg19_refFlat_WEE2:range=chr7:141408559-1414301205'pad=0,hg19_refFlat_WEE2:range=chr7:141408559-1414301205'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60chr7:141427998-141431071"	NA	inter
CUST_33322_PI429285431	2.547064	A	1.4886572	A	2.08263035659832	0	lncRNA	34904-2_{3001..4757}	n340038|BX648649|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2493|NULL|-1.0932100|-0.4025315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340038|BX648649|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2493|NULL|-1.0932100|-0.4025315	chr10	 60505900	 60507656	+	NA	NA	NA	NA	BICC1	NA	chr10:60492900-60517642	inner
CUST_10804_PI429285431	1.2075015	A	1.0405443	A	1.12268811512881	0	lncRNA	12341-1_{1..1902}	lnc-ULBP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ULBP2-1:2	chr6	150261044	150262945	+	lnc-ULBP2-1	lnc-ULBP2-1:2	XLOC_005501	linc-ULBP2-1	ULBP2	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60chr6:150263136-150270371"	NA	inter
CUST_27986_PI429285431	0.922372	A	0.9175052	A	1.00337910504504	0	lncRNA	29593-1_{1..520}	n325238|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328738|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328738|-1.0624400|-0.2038182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325238|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328738|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328738|-1.0624400|-0.2038182	chr2	 81543329	 81543848	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8663_PI429285431	1.2672751	A	2.6732612	A	0.377360127881536	0	lncRNA	10214-1_{1..764}	lnc-EVX1-10:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EVX1-10:9	chr7	 27167819	 27168582	+	lnc-EVX1-10	lnc-EVX1-10:9	ENSG00000253552	AC004080.12	HOXA3	NA	chr7:27157819-27166639	inner
LNCA_21_P0012172	0.9257769	A	0.9203573	A	1.00376364525185	0	lncRNA	TCONS_l2_00016983	NA	NA	NA	NA	XLOC_l2_008996	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008996), lincRNA [TCONS_l2_00016983]"	chr21:20618678-20633312	hs|21q21.1	Agilent_HUMAN_G3V2	TCONS_l2_00016983	TCONS_l2_00016983	chr21	 20618678	 20633312	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13013_PI429285431	1.7969433	A	2.2432096	A	0.733939831160149	0	lncRNA	14639-1_{1..356}	lnc-HOXC13-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOXC13-1:2	chr12	 54155612	 54155967	+	lnc-HOXC13-1	lnc-HOXC13-1:2	XLOC_009764	linc-HOXC13-1	NA	NA	NA	inter
CUST_37072_PI429285431	4.766152	P	5.004037	P	0.847987556660332	0	lncRNA	38200-2_{3001..4603}	n345517|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1066|NULL|-1.3011500|-0.3637381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345517|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1066|NULL|-1.3011500|-0.3637381	chr2	 37069145	 37070747	-	NA	NA	NA	NA	STRN	NA	chr2:37064841-37083286	inner
CUST_4561_PI429285431	1.5778198	A	1.6308551	A	0.963906222502622	0	lncRNA	4510-1_{1..722}	"transcript_id ""ENST00000575689.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000575689.1"" | genecode_v17"	chr13	 24040710	 24041431	+	ENSG00000232977.2	ENST00000575689.1	LINC00327	LINC00327-003	NA	NA	NA	inter
CUST_32366_PI429285431	3.3117533	P	3.1893816	A	1.08852285562996	0	lncRNA	34044-1_{1..515}	n338954|BC031954|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1382|NULL|-1.0523400|-0.1347577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338954|BC031954|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1382|NULL|-1.0523400|-0.1347577	chr19	 55987349	 55987863	-	NA	NA	NA	NA	NAT14	NA	chr19:55996557-55997849	inner
CUST_22321_PI429285431	6.75847	P	7.0591054	P	0.811894738277634	0	lncRNA	23920-1_{1..391}	lnc-TOLLIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TOLLIP-1:1	chr11	  1269180	  1269570	-	lnc-TOLLIP-1	lnc-TOLLIP-1:1	ENSG00000255177.1	RP11-532E4.2	MUC5B	"hg19_refFlat_MUC5B:range=chr11:1244354-12828385'pad=0,hg19_refFlat_MUC5B:range=chr11:1244354-12828385'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.90chr11:1259180-1279227"	NA	inner
CUST_24548_PI429285431	0.9002708	A	0.90681833	A	0.995471881025053	0	lncRNA	26098-1_{1..504}	lnc-KIAA1009-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-KIAA1009-1:3	chr6	 85180509	 85181012	-	lnc-KIAA1009-1	lnc-KIAA1009-1:3	ENSG00000231776.1	RP1-90L14.1	NA	NA	NA	inter
CUST_30221_PI429285431	3.41289	P	3.5482862	P	0.910419775305902	0	lncRNA	31996-1_{1..551}	n335074|AJ608794|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249228|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249228|0.5600090|-0.1147903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335074|AJ608794|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249228|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249228|0.5600090|-0.1147903	chr6	 41658715	 41659265	-	NA	NA	NA	NA	TFEB	NA	chr6:41651716-41683678	inner
CUST_1038_PI429285431	2.2856348	A	2.9127722	A	0.647459833437534	0	lncRNA	1028-1_{1..1548}	"transcript_id ""ENST00000602760.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602760.1"" | genecode_v17"	chr2	114645780	114647327	-	ENSG00000270019.1	ENST00000602760.1	RP11-141B14.1	RP11-141B14.1-001	ACTR3	NA	chr2:114647537-114657327	inter
CUST_4973_PI429285431	0.9039527	A	1.3153505	A	0.751894524262768	0	lncRNA	4917-1_{1..626}	"transcript_id ""ENST00000556773.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556773.1"" | genecode_v17"	chr14	 97584122	 97584747	-	ENSG00000259026.1	ENST00000556773.1	RP11-907D1.1	RP11-907D1.1-002	NA	NA	NA	inter
CUST_40067_PI429285431	0.9033849	A	0.8974451	A	1.00412564275192	0	lncRNA	40919-1_{1..2566}	n407313|NR_026780|lncRNA|Homosapiens||RefGeneNoncode|NR_026780||2.6464500|-0.1349457	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n407313|NR_026780|lncRNA|Homosapiens||RefGeneNoncode|NR_026780||2.6464500|-0.1349457	chr6	170190168	170192733	+	NA	NA	NA	NA	C6orf70	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-62.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60chr6:170180168-170181617"	NA	inter
CUST_35478_PI429285431	2.7108104	A	3.0236106	A	0.80507762575073	0	lncRNA	36887-1_{1..1745}	n342577|CR612521|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5076|NULL|-1.1459500|-0.3121068	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342577|CR612521|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5076|NULL|-1.1459500|-0.3121068	chr18	 52890053	 52891797	-	NA	NA	NA	NA	TCF4	NA	chr18:52889562-52901798	inner
CUST_2492_PI429285431	5.8334513	P	6.243301	P	0.752701786109023	0	lncRNA	2484-1_{1..386}	"transcript_id ""ENST00000426374.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426374.2"" | genecode_v17"	chr6	 21354642	 21355027	-	ENSG00000227089.2	ENST00000426374.2	RP1-135L22.1	RP1-135L22.1-001	NA	NA	NA	inter
CUST_1248_PI429285431	12.731483	P	12.489571	P	1.18255886555794	0	lncRNA	1240-1_{1..413}	"transcript_id ""ENST00000598002.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598002.1"" | genecode_v17"	chr2	219840955	219841367	+	ENSG00000236445.2	ENST00000598002.1	LINC00608	LINC00608-003	FEV	NA	chr2:219845809-219850379	inter
CUST_37198_PI429285431	4.0520725	P	4.5561867	P	0.705093164685788	0	lncRNA	38310-1_{1..1375}	n345630|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1179|NULL|-1.3165400|-0.3046805	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345630|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1179|NULL|-1.3165400|-0.3046805	chr4	 24330386	 24331760	+	NA	NA	NA	NA	NA	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.51;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10"	NA	inter
CUST_35599_PI429285431	1.2769908	A	1.4133046	A	0.909840903439302	0	lncRNA	37014-1_{1..3000}	n342738|AF015521|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5241|NULL|10.7800000|-0.0967252	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342738|AF015521|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5241|NULL|10.7800000|-0.0967252	chr11	  1151579	  1154578	+	NA	NA	NA	NA	MUC5AC	NA	chr11:1142474-1222364	inner
CUST_25719_PI429285431	4.9480815	P	5.261006	P	0.805008264704082	0	lncRNA	27247-1_{1..664}	lnc-ATG16L2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATG16L2-5:1	chr11	 72298845	 72299508	+	lnc-ATG16L2-5	lnc-ATG16L2-5:1	ENSG00000256633.1	RP11-169D4.2	PDE2A	"hg19_refFlat_PDE2A:range=chr11:72288428-723533165'pad=0,hg19_refFlat_PDE2A:range=chr11:72288428-723533165'pad=0 3'pad=0 strand=- repeatMasking=none,-98.10;hg19_refFlat_PDE2A:range=chr11:72288428-723793855'pad=0,hg19_refFlat_PDE2A:range=chr11:72288428-723793855'pad=0 3'pad=0 strand=- repeatMasking=none,-98.10;hg19_refFlat_PDE2A:range=chr11:72288428-723534205'pad=0,hg19_refFlat_PDE2A:range=chr11:72288428-723534205'pad=0 3'pad=0 strand=- repeatMasking=none,-98.10;hg19_refFlat_PDE2A:range=chr11:72288428-723852515'pad=0,hg19_refFlat_PDE2A:range=chr11:72288428-723852515'pad=0 3'pad=0 strand=- repeatMasking=none,-98.10chr11:72288845-72309023"	NA	inner
CUST_16738_PI429285431	0.94934183	A	0.8904346	A	1.04167644365926	0	lncRNA	18445-1_{1..3000}	lnc-ADCY9-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ADCY9-1:8	chr16	  3996154	  3999153	-	lnc-ADCY9-1	lnc-ADCY9-1:8	XLOC_011865	linc-CREBBP	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-32.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60"	NA	inter
CUST_29831_PI429285431	6.4092836	P	6.2247863	P	1.13642092395083	0	lncRNA	31594-1_{1..274}	n333670|D82342|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000101770|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000101770|0.3109770|-0.0222749	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333670|D82342|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000101770|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000101770|0.3109770|-0.0222749	chr10	 50817141	 50817414	+	NA	NA	NA	NA	CHAT	NA	chr10:50817141-50837841	inner
CUST_39928_PI429285431	1.0788957	A	0.92907774	A	1.10942947485557	0	lncRNA	40806-1_{1..1553}	n406792|NR_024240_5|lncRNA|Homosapiens||RefGeneNoncode|NR_024240_5||-0.1792900|-0.3488610	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406792|NR_024240_5|lncRNA|Homosapiens||RefGeneNoncode|NR_024240_5||-0.1792900|-0.3488610	chr6	  1303075	  1304627	+	NA	NA	NA	NA	FOXQ1	NA	chr6:1312675-1314993	inter
CUST_40885_PI429285431	1.30733	A	1.0036775	A	1.23426527528132	0	lncRNA	41577-1_{1..3000}	n410695|NR_037945|lncRNA|Homosapiens||RefGeneNoncode|NR_037945||7.2327800|-0.1669978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410695|NR_037945|lncRNA|Homosapiens||RefGeneNoncode|NR_037945||7.2327800|-0.1669978	chr20	 57226308	 57229307	+	NA	NA	NA	NA	NPEPL1	NA	chr20:57264187-57290900	inner
CUST_26456_PI429285431	1.5587375	A	1.5401608	A	1.01295964487191	0	lncRNA	27964-1_{1..574}	lnc-CHURC1-FNTB-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHURC1-FNTB-1:4	chr14	 65560350	 65560923	+	lnc-CHURC1-FNTB-1	lnc-CHURC1-FNTB-1:4	ENSG00000259118.1	RP11-840I19.3	MAX	"hg19_refFlat_MAX:range=chr14:65550898-655690575'pad=0,hg19_refFlat_MAX:range=chr14:65550898-655690575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MAX:range=chr14:65472922-655690575'pad=0,hg19_refFlat_MAX:range=chr14:65472922-655690575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MAX:range=chr14:65543194-655690575'pad=0,hg19_refFlat_MAX:range=chr14:65543194-655690575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MAX:range=chr14:65544130-655690575'pad=0,hg19_refFlat_MAX:range=chr14:65544130-655690575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80chr14:65550350-65569227"	NA	inner
CUST_50074_PI429285431	5.2105436	P	4.839562	P	1.29323243801461	0	lncRNA	53807-1_{1..859}	hg19_lincRNAsTranscripts_TCONS_l2_00028242 range=chr8:74817620-74827134 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028242 range=chr8:74817620-74827134 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 74817620	 74818478	-	NA	NA	NA	NA	TCEB1	NA	chr8:74816894-74837134	inter
LNCA_21_P0003810	0.91378754	A	0.90209806	A	1.00813544443766	0	lncRNA	TCONS_00008683	NA	NA	NA	NA	XLOC_004199	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004199), lincRNA [TCONS_00008683]"	chr4:184393814-184393755	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00008683	TCONS_00008683	chr4	184393755	184393814	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40150_PI429285431	2.7798176	A	2.83036	A	0.965573240833251	0	lncRNA	40988-1_{1..2757}	n407800|NR_027332|lncRNA|Homosapiens||RefGeneNoncode|NR_027332||1.7151100|-0.3673435	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407800|NR_027332|lncRNA|Homosapiens||RefGeneNoncode|NR_027332||1.7151100|-0.3673435	chr4	175411327	175414083	-	NA	NA	NA	NA	HPGD	NA	chr4:175411328-175444044	inner
CUST_41813_PI429285431	0.91259634	A	0.90850335	A	1.00284107269776	0	lncRNA	43407-1_{1..75}	ENST00000384840 ncrna:miRNA chromosome:GRCh37:X:133303408:133303482:-1 gene:ENSG00000207572 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384840 ncrna:miRNA chromosome:GRCh37:X:133303408:133303482:-1 gene:ENSG00000207572 gene_biotype:miRNA transcript_biotype:miRNA	chrX	133303408	133303482	-	ENSG00000207572	ENST00000384840	NA	NA	NA	NA	NA	inter
CUST_33292_PI429285431	0.9165588	A	0.911149	A	1.00375682686679	0	lncRNA	34875-1_{1..2743}	n340004|BC017470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2457|NULL|-1.2896700|-0.3754906	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340004|BC017470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2457|NULL|-1.2896700|-0.3754906	chr10	 28127444	 28130186	+	NA	NA	NA	NA	ARMC4	NA	chr10:28117444-28140140	inner
CUST_1709_PI429285431	0.89490646	A	1.0926216	A	0.871930385113891	0	lncRNA	1693-1_{1..451}	"transcript_id ""ENST00000511735.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511735.1"" | genecode_v17"	chr4	 16974898	 16975348	-	ENSG00000249998.1	ENST00000511735.1	RP11-141E13.1	RP11-141E13.1-001	NA	NA	NA	inter
CUST_14174_PI429285431	4.8313107	P	5.025917	P	0.873811319541182	0	lncRNA	15827-1_{1..345}	lnc-PRKAA2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRKAA2-1:4	chr1	 56881205	 56881549	+	lnc-PRKAA2-1	lnc-PRKAA2-1:4	XLOC_000214	linc-PRKAA2-1	NA	NA	NA	inter
CUST_11502_PI429285431	6.4195657	P	6.5396037	P	0.920163413576	0	lncRNA	13071-1_{1..241}	lnc-GSX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GSX1-1:1	chr13	 28314054	 28314294	+	lnc-GSX1-1	lnc-GSX1-1:1	XLOC_010326	linc-GSX1	NA	NA	NA	inter
CUST_43956_PI429285431	4.374467	P	2.6950076	A	3.20307904252052	0	lncRNA	48663-3_{6001..9000}	"gi|254750700|ref|NR_027671.2| Homo sapiens UDP-glucose glycoprotein glucosyltransferase 1 (UGGT1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254750700|ref|NR_027671.2| Homo sapiens UDP-glucose glycoprotein glucosyltransferase 1 (UGGT1), transcript variant 2, non-coding RNA"	Chr2	128854782	128857781	+	56886	NR_027671.2	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30"	NA	inter
CUST_5826_PI429285431	2.2853835	A	2.131678	A	1.11242301644362	0	lncRNA	5755-1_{1..409}	"transcript_id ""ENST00000588414.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588414.1"" | genecode_v17"	chr17	 34135493	 34135901	-	ENSG00000267578.1	ENST00000588414.1	AC015849.12	AC015849.12-001	TAF15	NA	chr17:34136488-34145901	inter
CUST_24209_PI429285431	6.5727377	P	6.844288	P	0.828428849230378	0	lncRNA	25760-1_{1..752}	lnc-HBE1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HBE1-1:1	chr11	  5526581	  5527332	-	lnc-HBE1-1	lnc-HBE1-1:1	ENSG00000167355.3	AC104389.28	UBQLNL	NA	chr11:5535623-5536882	inner
LNCA_21_P0004102	0.91093045	A	0.8988501	A	1.00840861601923	0	lncRNA	ENST00000502209	NA	NA	NA	NA	XLOC_004736	NA	ENST00000502209	NA	NA	"BROAD Institute lincRNA (XLOC_004736), lincRNA [TCONS_00009606]"	chr5:12571989-12571930	hs|5p15.2	Agilent_HUMAN_G3V2	ENST00000502209	ENST00000502209	chr5	 12571930	 12571989	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36295_PI429285431	0.90927225	A	1.224613	A	0.803661151676523	0	lncRNA	37526-1_{1..1124}	n344821|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_370|NULL|-1.3101200|-0.3303811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344821|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_370|NULL|-1.3101200|-0.3303811	chr5	 60466566	 60467689	-	NA	NA	NA	NA	C5orf43	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90chr5:60456566-60458302"	NA	inter
CUST_2311_PI429285431	0.90444005	A	0.9039483	A	1.00034091322375	0	lncRNA	2303-1_{1..615}	"transcript_id ""ENST00000508879.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508879.1"" | genecode_v17"	chr5	111964133	111964747	+	ENSG00000250358.1	ENST00000508879.1	RP11-159K7.2	RP11-159K7.2-001	NA	NA	NA	inter
CUST_2939_PI429285431	1.0731483	A	1.2965697	A	0.856531731969573	0	lncRNA	2920-1_{1..385}	"transcript_id ""ENST00000437569.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437569.1"" | genecode_v17"	chr7	136090011	136090395	+	ENSG00000232053.2	ENST00000437569.1	AC009784.3	AC009784.3-003	NA	NA	NA	inter
CUST_42337_PI429285431	9.903254	P	9.942269	P	0.973319254303176	0	lncRNA	44995-1_{1..70}	ENST00000362883 ncrna:snoRNA chromosome:GRCh37:17:62223443:62223512:1 gene:ENSG00000199753 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362883 ncrna:snoRNA chromosome:GRCh37:17:62223443:62223512:1 gene:ENSG00000199753 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 62223443	 62223512	+	ENSG00000199753	ENST00000362883	NA	NA	TEX2	NA	chr17:62224795-62233512	inter
CUST_31738_PI429285431	3.729713	P	4.5347137	P	0.572361802587596	0	lncRNA	33479-1_{1..1147}	n338275|BC014884|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|668|NULL|-1.0646500|-0.2198233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338275|BC014884|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|668|NULL|-1.0646500|-0.2198233	chr19	  3927007	  3928153	+	NA	NA	NA	NA	ATCAY	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60chr19:3917007-3928080"	NA	inner
CUST_50491_PI429285431	4.6676326	P	4.437563	P	1.17289153172451	0	lncRNA	54187-1_{1..386}	hg19_lincRNAsTranscripts_TCONS_l2_00030298 range=chrX:102024217-102082052 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030298 range=chrX:102024217-102082052 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	102024217	102024602	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48994_PI429285431	1.6448004	A	0.91618145	A	1.65705208438925	0	lncRNA	52826-1_{1..2397}	hg19_lincRNAsTranscripts_TCONS_l2_00019711 range=chr3:197318826-197354462 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019711 range=chr3:197318826-197354462 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	197318826	197321222	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40980_PI429285431	4.0822177	P	4.5916963	P	0.702476271797338	0	lncRNA	41649-3_{6001..6477}	n411097|NR_038921|lncRNA|Homosapiens||RefGeneNoncode|NR_038921||-1.2774000|-0.3500198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n411097|NR_038921|lncRNA|Homosapiens||RefGeneNoncode|NR_038921||-1.2774000|-0.3500198	chr10	 22547000	 22547476	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13682_PI429285431	6.2320724	P	6.659627	P	0.743521002354883	0	lncRNA	15322-1_{1..515}	lnc-CTD-2523D13.1.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2523D13.1.1-5:1	chr11	119810201	119810715	+	lnc-CTD-2523D13.1.1-5	lnc-CTD-2523D13.1.1-5:1	XLOC_009302	linc-OAF-3	NA	NA	NA	inter
CUST_12575_PI429285431	0.9088359	A	0.91417414	A	0.996306651247449	0	lncRNA	14183-1_{1..1388}	lnc-RP11-150O12.5.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-150O12.5.1-1:1	chr8	 37422402	 37423789	+	lnc-RP11-150O12.5.1-1	lnc-RP11-150O12.5.1-1:1	XLOC_006773	linc-ZNF703-2	NA	NA	NA	inter
CUST_1093_PI429285431	3.334316	A	2.1273568	A	2.30850554863873	0	lncRNA	1082-1_{1..546}	"transcript_id ""ENST00000451027.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451027.1"" | genecode_v17"	chr2	145425552	145426097	+	ENSG00000226674.3	ENST00000451027.1	AC074093.1	AC074093.1-004	NA	NA	NA	inter
CUST_33748_PI429285431	1.3383383	A	0.95494336	A	1.30440777003252	0	lncRNA	35304-1_{1..2722}	n340526|BC047373|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2988|NULL|-1.1669400|-0.2619600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340526|BC047373|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2988|NULL|-1.1669400|-0.2619600	chr5	 79362171	 79364892	-	NA	NA	NA	NA	THBS4	"hg19_refFlat_THBS4:range=chr5:79331361-793789645'pad=0,hg19_refFlat_THBS4:range=chr5:79331361-793789645'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00chr5:79352171-79379110"	NA	inner
CUST_34439_PI429285431	4.0117836	P	4.760198	P	0.595257418268813	0	lncRNA	35918-1_{1..488}	n341315|AF086129|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3784|NULL|-1.0605300|-0.1577395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341315|AF086129|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3784|NULL|-1.0605300|-0.1577395	chr7	127224922	127225409	+	NA	NA	NA	NA	GCC1	"hg19_refFlat_GCC1:range=chr7:127222068-1272252365'pad=0,hg19_refFlat_GCC1:range=chr7:127222068-1272252365'pad=0 3'pad=0 strand=- repeatMasking=none,-95.20chr7:127220682-127225654"	NA	inner
CUST_6497_PI429285431	4.372422	P	4.5262923	P	0.898835929397898	0	lncRNA	6439-1_{1..390}	"transcript_id ""ENST00000592100.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592100.1"" | genecode_v17"	chr19	 37746801	 37747190	+	ENSG00000226686.3	ENST00000592100.1	AC012309.5	AC012309.5-005	NA	NA	NA	inter
LNCA_21_P0005357	0.9147957	A	0.9030422	A	1.00818018172541	0	lncRNA	TCONS_00013360	NA	NA	NA	NA	XLOC_005997	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005997), lincRNA [TCONS_00013360]"	chr7:17133283-17133342	hs|7p21.1	Agilent_HUMAN_G3V2	TCONS_00013360	TCONS_00013360	chr7	 17133283	 17133342	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2509_PI429285431	0.9079381	A	0.90304035	A	1.00340063067279	0	lncRNA	2501-1_{1..396}	"transcript_id ""ENST00000525912.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525912.1"" | genecode_v17"	chr6	 33835283	 33835678	-	ENSG00000249346.2	ENST00000525912.1	RP3-468B3.3	RP3-468B3.3-002	NA	NA	NA	inter
CUST_10110_PI429285431	1.1022445	A	0.90839905	A	1.14380843513609	0	lncRNA	11635-1_{1..323}	lnc-ALDH1A2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALDH1A2-2:1	chr15	 58177603	 58177925	-	lnc-ALDH1A2-2	lnc-ALDH1A2-2:1	XLOC_011485	linc-ZNF280D	NA	NA	NA	inter
CUST_50655_PI429285431	0.9146426	A	0.91242856	A	1.00153583377015	0	lncRNA	54331-1_{1..675}	hg19_lincRNAsTranscripts_TCONS_l2_00002983 range=chr10:38156418-38175426 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002983 range=chr10:38156418-38175426 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 38156418	 38157092	+	NA	NA	NA	NA	ZNF248	NA	chr10:38146418-38146486	inter
CUST_5804_PI429285431	1.2523588	A	0.8911378	A	1.28451256265286	0	lncRNA	5729-1_{1..409}	"transcript_id ""ENST00000579561.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579561.1"" | genecode_v17"	chr17	 29291953	 29292361	-	ENSG00000265743.1	ENST00000579561.1	RP11-848P1.3	RP11-848P1.3-001	RNF135	NA	chr17:29297956-29302518	inter
CUST_14825_PI429285431	0.91584194	A	0.9095057	A	1.00440160562514	0	lncRNA	16488-1_{1..629}	lnc-PHF3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHF3-4:1	chr6	 66886174	 66886802	+	lnc-PHF3-4	lnc-PHF3-4:1	XLOC_005336	linc-BAI3-5	NA	NA	NA	inter
CUST_6531_PI429285431	15.384408	P	15.583096	P	0.871342609993826	0	lncRNA	6474-1_{1..301}	"transcript_id ""ENST00000595748.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595748.1"" | genecode_v17"	chr19	 43833447	 43833747	-	ENSG00000231412.2	ENST00000595748.1	CTC-490G23.2	CTC-490G23.2-001	NA	NA	NA	inter
CUST_5646_PI429285431	5.9222364	P	3.73515	P	4.55384882865129	0	lncRNA	5573-2_{3001..4614}	"transcript_id ""ENST00000570137.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000570137.1"" | genecode_v17"	chr16	 80634803	 80636416	-	ENSG00000261128.1	ENST00000570137.1	RP11-18F14.2	RP11-18F14.2-001	CDYL2	NA	chr16:80637675-80646416	inter
CUST_16864_PI429285431	3.404926	A	4.2114477	P	0.571758692760877	0	lncRNA	18570-1_{1..377}	lnc-FAM82A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM82A1-1:1	chr2	 38098953	 38099329	+	lnc-FAM82A1-1	lnc-FAM82A1-1:1	XLOC_001432	linc-FAM82A1-1	NA	NA	NA	inter
CUST_15581_PI429285431	1.040928	A	1.116237	A	0.949138810275401	0	lncRNA	17266-1_{1..853}	lnc-CA8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CA8-2:1	chr8	 61377996	 61378848	-	lnc-CA8-2	lnc-CA8-2:1	XLOC_007094	linc-CA8-2	NA	NA	NA	inter
LNCA_21_P0003705	0.9241823	A	0.9122302	A	1.0083189763843	0	lncRNA	TCONS_00008388	NA	NA	NA	NA	XLOC_003840	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003840), lincRNA [TCONS_00008388]"	chr4:190498126-190498185	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008388	TCONS_00008388	chr4	190498126	190498185	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46_PI429201921	5.577452	P	5.823617	P	0.84313467602578	0	lncRNA	47-1_{1..1469}	TC15002419.hg.1	TCONS_00023195-XLOC_011392 // Rinn lincRNAs // linc-CCDC140-10 chr15:+:102495087-102496557 // chr15 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr15:+:102495087-102496557	NA	Affy_HUMAN_HTA2.0	TCONS_00023195-XLOC_011392	linc-CCDC140-10	chr15	102495087	102496557	+	NA	NA	NA	NA	CDON	NA	chr11:125826713-125836214	Unknown
CUST_18854_PI429285431	8.4756155	P	8.587127	P	0.925617791385588	0	lncRNA	20548-1_{1..3000}	lnc-REXO1L2P-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-REXO1L2P-1:1	chr8	 86801313	 86804312	+	lnc-REXO1L2P-1	lnc-REXO1L2P-1:1	ENSG00000255694	AC232323.1	LOC100288562	"hg19_refFlat_REXO1L1:range=chr8:86787279-867893065'pad=0,hg19_refFlat_REXO1L1:range=chr8:86787279-867893065'pad=0 3'pad=0 strand=- repeatMasking=none,-105.00;hg19_refFlat_REXO1L1:range=chr8:86573699-865757265'pad=0,hg19_refFlat_REXO1L1:range=chr8:86573699-865757265'pad=0 3'pad=0 strand=- repeatMasking=none,-105.00chr8:86802465-86804650"	NA	inter
LNCA_21_P0005309	14.565834	P	14.970941	P	0.75518028143848	0	lncRNA	ENST00000412800	NA	NA	NA	NA	XLOC_006446	NA	ENST00000412800	NA	NA	"BROAD Institute lincRNA (XLOC_006446), lincRNA [TCONS_00013173]"	chr7:53626998-53626939	hs|7p12.1	Agilent_HUMAN_G3V2	ENST00000412800	ENST00000412800	chr7	 53626939	 53626998	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40836_PI429285431	6.5577765	P	6.282768	P	1.21000121822422	0	lncRNA	41539-1_{1..1799}	n410607|NR_037858|lncRNA|Homosapiens||RefGeneNoncode|NR_037858||-0.5489130|-0.2687929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410607|NR_037858|lncRNA|Homosapiens||RefGeneNoncode|NR_037858||-0.5489130|-0.2687929	chr2	122407229	122409027	+	NA	NA	NA	NA	CLASP1	NA	chr2:122397229-122407052	inter
CUST_52021_PI429285431	1.8309116	A	2.6217384	A	0.578012741328814	0	lncRNA	55552-1_{1..1480}	hg19_lincRNAsTranscripts_TCONS_l2_00017143 range=chr21:15313150-15327543 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017143 range=chr21:15313150-15327543 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 15313150	 15314629	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26940_PI429285431	0.914501	A	0.9202898	A	0.995995548884665	0	lncRNA	28461-1_{1..739}	n324020|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053234|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053234|-0.9892690|-0.2313481	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324020|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053234|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053234|-0.9892690|-0.2313481	chr9	 97217601	 97218339	-	NA	NA	NA	NA	HIATL1	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50chr9:97207601-97223202"	NA	inner
LNCA_21_P0005715	0.9301552	A	0.91749024	A	1.00881732694183	0	lncRNA	ENST00000520259	NA	AK024336	NA	Hs.367827	XLOC_006833	NA	ENST00000520259	THC2508825	NA	"BROAD Institute lincRNA (XLOC_006833), lincRNA [TCONS_00014749]"	chr8:71397805-71397864	hs|8q13.3	Agilent_HUMAN_G3V2	ENST00000520259	ENST00000520259	chr8	 71397805	 71397864	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004572	0.93058336	A	0.91779584	A	1.00890303175123	0	lncRNA	TCONS_00011021	NA	NA	NA	NA	XLOC_004965	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004965), lincRNA [TCONS_00011021]"	chr5:117810116-117810057	hs|5q23.1	Agilent_HUMAN_G3V2	TCONS_00011021	TCONS_00011021	chr5	117810057	117810116	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010912	13.286202	P	12.674638	P	1.5279146965671	0	lncRNA	TCONS_l2_00003853	NA	NA	NA	NA	XLOC_l2_002176	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002176), lincRNA [TCONS_l2_00003853]"	chr10:134958158-134958101	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_l2_00003853	TCONS_l2_00003853	chr10	134958101	134958158	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51021_PI429285431	2.4878974	A	2.8839917	A	0.759912755807862	0	lncRNA	54666-2_{3001..3945}	hg19_lincRNAsTranscripts_TCONS_l2_00007044 range=chr13:19312242-19318510 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007044 range=chr13:19312242-19318510 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 19315242	 19316186	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35026_PI429285431	1.592104	A	1.4479195	A	1.10510580294268	0	lncRNA	36439-1_{1..501}	n341968|AF086474|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4449|NULL|-0.8227250|-0.1849708	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341968|AF086474|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4449|NULL|-0.8227250|-0.1849708	chr12	 76965096	 76965596	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45865_PI429285431	1.3737043	A	0.9097006	A	1.37936445940209	0	lncRNA	50194-1_{1..1168}	"gi|310120752|ref|XR_110899.1| PREDICTED: Homo sapiens uncharacterized LOC100506282 (LOC100506282), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310120752|ref|XR_110899.1| PREDICTED: Homo sapiens uncharacterized LOC100506282 (LOC100506282), misc_RNA"	Chr11	 82901382	 82902549	-	100506282	XR_110899.2	NA	NA	NA	NA	NA	inter
CUST_49453_PI429285431	4.541062	P	4.6531997	P	0.925216115306678	0	lncRNA	53253-1_{1..290}	hg19_lincRNAsTranscripts_TCONS_l2_00024675 range=chr6:26960131-27018431 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024675 range=chr6:26960131-27018431 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 26960131	 26960420	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42887_PI429285431	2.2173266	A	1.8033534	A	1.33235007466824	0	lncRNA	45973-1_{1..67}	ENST00000408255 ncrna:snoRNA chromosome:GRCh37:10:70514929:70514995:1 gene:ENSG00000221182 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408255 ncrna:snoRNA chromosome:GRCh37:10:70514929:70514995:1 gene:ENSG00000221182 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	 70514929	 70514995	+	ENSG00000221182	ENST00000408255	NA	NA	CCAR1	NA	chr10:70504929-70524995	inner
CUST_50672_PI429285431	0.9194415	A	0.9090046	A	1.00726053862931	0	lncRNA	54346-1_{1..703}	hg19_lincRNAsTranscripts_TCONS_l2_00003528 range=chr10:45637316-45650325 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003528 range=chr10:45637316-45650325 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 45637316	 45638018	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12485_PI429285431	3.6607862	P	3.4375386	P	1.16735843046575	0	lncRNA	14096-1_{1..293}	lnc-CYYR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CYYR1-1:1	chr21	 27807886	 27808178	-	lnc-CYYR1-1	lnc-CYYR1-1:1	XLOC_014042	linc-APP-1	NA	NA	NA	inter
CUST_20070_PI429285431	0.96054065	A	0.94917566	A	1.00790872078856	0	lncRNA	21720-1_{1..3000}	lnc-SLCO5A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SLCO5A1-1:1	chr8	 70579284	 70582283	-	lnc-SLCO5A1-1	lnc-SLCO5A1-1:1	ENSG00000261658.1	RP11-102F4.3	SULF1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40chr8:70569284-70573147"	NA	inter
CUST_32168_PI429285431	6.516655	P	6.5384784	P	0.984987007571057	0	lncRNA	33868-1_{1..2101}	n338739|AK057291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1160|NULL|-0.8616190|-0.1747797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338739|AK057291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1160|NULL|-0.8616190|-0.1747797	chr2	 30900627	 30902727	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3523501	7.1515536	P	7.433718	P	0.822356353073405	0	lncRNA	XR_109585	XR_109585	XR_109585	   374890	Hs.380776	LOC374890	uncharacterized LOC374890	NA	THC2748324	NA	"PREDICTED: Homo sapiens hypothetical LOC374890 (LOC374890), miscRNA [XR_109585]"	chr19:22798453-22798394	hs|19p12	Agilent_HUMAN_G3V2	XR_109585	XR_109585	chr19	 22798394	 22798453	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31657_PI429285431	2.2577786	A	1.4181393	A	1.78960265270554	0	lncRNA	33408-1_{1..2141}	n338179|BC044921|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|569|NULL|-0.8806690|-0.2042876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338179|BC044921|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|569|NULL|-0.8806690|-0.2042876	chr1	113258293	113260433	+	NA	NA	NA	NA	RHOC	NA	chr1:113248293-113250025	inter
CUST_22752_PI429285431	7.918838	P	8.577343	P	0.633534460224406	0	lncRNA	24335-1_{1..852}	lnc-KIAA0319L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0319L-1:1	chr1	 36042923	 36043774	-	lnc-KIAA0319L-1	lnc-KIAA0319L-1:1	ENSG00000239636.1	RP4-728D4.2	TFAP2E	"hg19_refFlat_TFAP2E:range=chr1:36039179-360602775'pad=0,hg19_refFlat_TFAP2E:range=chr1:36039179-360602775'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.30chr1:36038971-36053330"	NA	inner
LNCA_21_P0009429	0.9080815	A	0.9166089	A	0.994106690809117	0	lncRNA	AK127562	NA	AK127562	NA	Hs.451558	XLOC_012692	NA	NA	THC2523023	NA	"BROAD Institute lincRNA (XLOC_012692), lincRNA [TCONS_00026215]"	chr18:55473708-55473767	hs|18q21.31	Agilent_HUMAN_G3V2	AK127562	AK127562	chr18	 55473708	 55473767	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20126_PI429285431	0.9148676	A	1.032008	A	0.922013385173039	0	lncRNA	21774-1_{1..3000}	lnc-MRPL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-MRPL3-1:1	chr3	131173970	131176969	-	lnc-MRPL3-1	lnc-MRPL3-1:1	ENSG00000261167.1	RP11-517B11.7	MRPL3	NA	chr3:131181045-131187442	inter
CUST_51946_PI429285431	5.7455463	P	4.9766045	P	1.70401944663194	0	lncRNA	55488-1_{1..322}	hg19_lincRNAsTranscripts_TCONS_l2_00016218 range=chr20:25732667-25733477 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016218 range=chr20:25732667-25733477 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 25732667	 25732988	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006555	4.129431	P	3.4872527	P	1.56068383044425	0	lncRNA	TCONS_00017392	NA	NA	NA	NA	XLOC_007916	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007916), lincRNA [TCONS_00017392]"	chrX:1862547-1862699	hs|Xp22.33	Agilent_HUMAN_G3V2	TCONS_00017392	TCONS_00017392	chrX	  1862547	  1862699	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42419_PI429285431	11.041088	P	11.298798	P	0.836414512941885	0	lncRNA	45130-1_{1..135}	ENST00000386847 ncrna:snoRNA chromosome:GRCh37:17:7478031:7478165:1 gene:ENSG00000209582 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000386847 ncrna:snoRNA chromosome:GRCh37:17:7478031:7478165:1 gene:ENSG00000209582 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	  7478031	  7478165	+	ENSG00000209582	ENST00000386847	NA	NA	SENP3	NA	chr17:7468031-7475287	inter
CUST_41452_PI429285431	13.268859	P	13.976166	P	0.612462322439206	0	lncRNA	42632-1_{1..67}	ENST00000583412 ncrna:miRNA chromosome:GRCh37:3:25706364:25706430:-1 gene:ENSG00000264219 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583412 ncrna:miRNA chromosome:GRCh37:3:25706364:25706430:-1 gene:ENSG00000264219 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 25706364	 25706430	-	ENSG00000264219	ENST00000583412	NA	NA	TOP2B	NA	chr3:25696364-25705788	inter
CUST_356_PI429285431	1.9993714	A	0.94436014	A	2.07773442291107	0	lncRNA	348-2_{3001..3481}	"transcript_id ""ENST00000566942.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566942.1"" | genecode_v17"	chr1	111199182	111199662	-	ENSG00000259834.1	ENST00000566942.1	RP11-284N8.3	RP11-284N8.3-001	NA	NA	NA	inter
CUST_45039_PI429285431	3.236934	A	1.3909081	A	3.59508504667214	0	lncRNA	49536-1_{1..2162}	"gi|394025767|ref|NR_073003.1| Homo sapiens dihydrouridine synthase 4-like (S. cerevisiae) (DUS4L), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|394025767|ref|NR_073003.1| Homo sapiens dihydrouridine synthase 4-like (S. cerevisiae) (DUS4L), transcript variant 4, non-coding RNA"	Chr7	107204402	107206563	+	11062	NR_073003.1	NA	NA	NA	NA	NA	inter
CUST_1331_PI429285431	1.2638873	A	0.91551065	A	1.27312727217557	0	lncRNA	1320-1_{1..743}	"transcript_id ""ENST00000605492.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605492.1"" | genecode_v17"	chr3	 32938576	 32939318	+	ENSG00000271051.1	ENST00000605492.1	RP11-301L7.1	RP11-301L7.1-001	TRIM71	NA	chr3:32928576-32933771	inter
CUST_35416_PI429285431	8.052182	P	8.806325	P	0.592898478667863	0	lncRNA	36826-1_{1..508}	n342478|AF086051|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4972|NULL|-0.8960760|-0.2126652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342478|AF086051|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4972|NULL|-0.8960760|-0.2126652	chr16	 46707357	 46707864	-	NA	NA	NA	NA	VPS35	NA	chr16:46697357-46717839	inner
CUST_26916_PI429285431	10.130277	P	9.933183	P	1.14638687708924	0	lncRNA	28434-1_{1..3000}	n323992|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053742|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053742|5.0839900|-0.3181304	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323992|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053742|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053742|5.0839900|-0.3181304	chr9	115421328	115424327	+	NA	NA	NA	NA	KIAA1958	NA	chr9:115411328-115422706	inner
CUST_15834_PI429285431	2.3722146	A	2.212657	A	1.11694457638222	0	lncRNA	17524-1_{1..531}	lnc-ITPR3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITPR3-1:2	chr6	 33882503	 33883033	+	lnc-ITPR3-1	lnc-ITPR3-1:2	XLOC_005263	linc-HMGA1-2	NA	NA	NA	inter
CUST_7680_PI429285431	9.622085	P	8.63147	P	1.98703185325763	0	lncRNA	9314-1_{1..595}	lnc-USP34-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP34-1:6	chr2	 61371908	 61372502	-	lnc-USP34-1	lnc-USP34-1:6	ENSG00000212978	XLOC_002111	KIAA1841	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-20.50chr2:61361908-61365169"	NA	inter
CUST_10245_PI429285431	1.0951335	A	1.7114036	A	0.652355329063688	0	lncRNA	11771-1_{1..456}	lnc-SEL1L-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEL1L-7:1	chr14	 84381385	 84381840	-	lnc-SEL1L-7	lnc-SEL1L-7:1	XLOC_011090	linc-SEL1L-6	NA	NA	NA	inter
CUST_19799_PI429285431	4.029048	P	4.713085	P	0.622421154596056	0	lncRNA	21456-1_{1..735}	lnc-RBP5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBP5-1:1	chr12	  7283621	  7284355	-	lnc-RBP5-1	lnc-RBP5-1:1	ENSG00000256967.1	RP11-273B20.1	CLSTN3	NA	chr12:7282967-7293794	inner
CUST_49791_PI429285431	5.5764775	P	5.1800513	P	1.31624331131367	0	lncRNA	53548-1_{1..2809}	hg19_lincRNAsTranscripts_TCONS_l2_00025910 range=chr7:62812765-62841245 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025910 range=chr7:62812765-62841245 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 62812765	 62815573	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12294_PI429285431	0.92869925	A	0.94597805	A	0.988094684310754	0	lncRNA	13905-1_{1..2087}	lnc-AC117834.1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC117834.1-3:4	chr8	 93694166	 93696252	+	lnc-AC117834.1-3	lnc-AC117834.1-3:4	XLOC_006870	linc-FAM92A1-3	NA	NA	NA	inter
CUST_21799_PI429285431	9.23234	P	8.657215	P	1.48980653943111	0	lncRNA	23409-1_{1..451}	lnc-HNRNPU-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HNRNPU-1:2	chr1	245017620	245018070	-	lnc-HNRNPU-1	lnc-HNRNPU-1:2	ENSG00000188206.5	HNRNPU-AS1	HNRNPU	NA	chr1:245013602-245027805	inner
CUST_43536_PI429285431	0.9056088	A	0.91143423	A	0.995970260897411	0	lncRNA	48319-1_{1..2912}	"gi|388454087|ref|NR_049760.1| Homo sapiens AKNA domain containing 1 (AKNAD1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388454087|ref|NR_049760.1| Homo sapiens AKNA domain containing 1 (AKNAD1), transcript variant 2, non-coding RNA"	Chr1	109358520	109361431	-	254268	NR_049760.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003203	0.92560804	A	0.92011404	A	1.00381541082861	0	lncRNA	TCONS_00006736	NA	NA	NA	NA	XLOC_003374	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003374), lincRNA [TCONS_00006736]"	chr3:191466470-191466411	hs|3q28	Agilent_HUMAN_G3V2	TCONS_00006736	TCONS_00006736	chr3	191466411	191466470	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37196_PI429285431	0.90046144	A	0.8967274	A	1.00259159168106	0	lncRNA	38308-1_{1..772}	n345628|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1177|NULL|-1.3181800|-0.3772364	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345628|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1177|NULL|-1.3181800|-0.3772364	chr4	 15135761	 15136532	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1664_PI429285431	7.037525	P	7.0028305	P	1.02433988947249	0	lncRNA	1649-1_{1..574}	"transcript_id ""ENST00000413586.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413586.1"" | genecode_v17"	chr3	195563205	195563778	-	ENSG00000223783.1	ENST00000413586.1	AC124944.5	AC124944.5-003	NA	NA	NA	inter
CUST_18720_PI429285431	6.5061846	P	5.7420225	P	1.69838331109214	0	lncRNA	20418-1_{1..2288}	lnc-AL592284.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL592284.1-1:1	chr1	144621447	144623734	+	lnc-AL592284.1-1	lnc-AL592284.1-1:1	ENSG00000225241	NBPF8	NBPF9	NA	chr1:144614959-144621685	inner
LNCA_21_P0003913	1.7396283	A	1.8934705	A	0.89885343658748	0	lncRNA	TCONS_00009185	NA	NA	NA	NA	XLOC_004198	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004198), lincRNA [TCONS_00009185]"	chr4:184271989-184271930	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00009185	TCONS_00009185	chr4	184271930	184271989	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14112_PI429285431	0.9086038	A	0.914953	A	0.995608739823246	0	lncRNA	15759-1_{1..450}	lnc-IL5RA-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL5RA-3:1	chr3	  2139831	  2140280	-	lnc-IL5RA-3	lnc-IL5RA-3:1	XLOC_003017	linc-IQCG-5	CNTN4	NA	chr3:2140550-2149848	inter
CUST_40585_PI429285431	2.1532538	A	1.6141948	A	1.45302447078542	0	lncRNA	41336-1_{1..3000}	n410043|NR_036481|lncRNA|Homosapiens||RefGeneNoncode|NR_036481||7.0945900|-0.1405492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410043|NR_036481|lncRNA|Homosapiens||RefGeneNoncode|NR_036481||7.0945900|-0.1405492	chr3	 13974552	 13977551	+	NA	NA	NA	NA	NA	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00"	NA	inter
CUST_8223_PI429285431	1.3462428	A	0.92209697	A	1.34177784715089	0	lncRNA	9814-1_{1..1698}	lnc-MRPS17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPS17-1:1	chr7	 56060639	 56062336	+	lnc-MRPS17-1	lnc-MRPS17-1:1	ENSG00000245903	ENST00000500575	GBAS	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50chr7:56050639-56067875"	NA	inner
CUST_6139_PI429285431	0.90677845	A	0.907905	A	0.99921943983944	0	lncRNA	6065-1_{1..739}	"transcript_id ""ENST00000584482.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584482.1"" | genecode_v17"	chr18	 27098224	 27098962	+	ENSG00000264587.1	ENST00000584482.1	RP11-784B15.1	RP11-784B15.1-001	NA	NA	NA	inter
CUST_246_PI429285431	4.073643	P	3.8368957	P	1.17833299493932	0	lncRNA	238-1_{1..219}	"transcript_id ""ENST00000427292.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427292.1"" | genecode_v17"	chr1	 59361517	 59361735	-	ENSG00000232453.1	ENST00000427292.1	RP4-794H19.1	RP4-794H19.1-002	NA	NA	NA	inter
CUST_35906_PI429285431	0.8960985	A	0.8926718	A	1.00237803048348	0	lncRNA	37279-5_{12001..13197}	n344554|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_102|NULL|-1.4895300|-0.3671434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344554|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_102|NULL|-1.4895300|-0.3671434	chr4	124572705	124573901	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15654_PI429285431	3.1642861	P	3.57932	P	0.750001871124821	0	lncRNA	17347-1_{1..555}	lnc-GPCPD1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPCPD1-1:4	chr20	  5490522	  5491076	-	lnc-GPCPD1-1	lnc-GPCPD1-1:4	XLOC_013643	linc-PROKR2-4	NA	NA	NA	inter
CUST_51294_PI429285431	1.0736264	A	1.3367875	A	0.833260155126469	0	lncRNA	54898-2_{3001..4133}	hg19_lincRNAsTranscripts_TCONS_l2_00008986 range=chr15:32808411-32825872 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008986 range=chr15:32808411-32825872 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 32811411	 32812543	-	NA	NA	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60"	NA	inter
CUST_8138_PI429285431	0.91346073	A	1.5631492	A	0.637417940370155	0	lncRNA	9741-1_{1..2425}	lnc-RP11-432B6.3.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-432B6.3.1-1:2	chr3	159924642	159927066	-	lnc-RP11-432B6.3.1-1	lnc-RP11-432B6.3.1-1:2	ENSG00000244040	CTD-2049J23.2	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_IL12A:range=chr3:159706844-1597133465'pad=0,hg19_refFlat_IL12A:range=chr3:159706844-1597133465'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40"	NA	inter
CUST_9241_PI429285431	1.6586146	A	2.2869644	A	0.646915955116333	0	lncRNA	10751-1_{1..555}	lnc-USP35-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-USP35-1:4	chr11	 77884866	 77885420	+	lnc-USP35-1	lnc-USP35-1:4	ENSG00000246174	RP11-705O3.1	KCTD21	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_KCTD21:range=chr11:77884818-778856005'pad=0,hg19_refFlat_KCTD21:range=chr11:77884818-778856005'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10chr11:77882298-77895023"	NA	inner
LNCA_21_P0001936	3.647703	P	3.9522977	P	0.809669647160062	0	lncRNA	ENST00000448117	NA	NA	NA	NA	XLOC_001755	NA	ENST00000448117	NA	NA	"BROAD Institute lincRNA (XLOC_001755), lincRNA [TCONS_00003049]"	chr2:172973692-172974558	hs|2q31.1	Agilent_HUMAN_G3V2	ENST00000448117	ENST00000448117	chr2	172973692	172974558	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33698_PI429285431	4.7774057	P	3.2298975	P	2.92311826578658	0	lncRNA	35259-1_{1..1982}	n340475|AK092218|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2936|NULL|-1.0603200|-0.3769316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340475|AK092218|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2936|NULL|-1.0603200|-0.3769316	chr17	  5374576	  5376557	-	NA	NA	NA	NA	DHX33	NA	chr17:5364576-5372380	inter
CUST_39983_PI429285431	10.481052	P	10.271397	P	1.15641161144785	0	lncRNA	40852-1_{1..3000}	n407073|NR_024567|lncRNA|Homosapiens||RefGeneNoncode|NR_024567||0.5514840|-0.3055941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407073|NR_024567|lncRNA|Homosapiens||RefGeneNoncode|NR_024567||0.5514840|-0.3055941	chr1	 41154751	 41157750	-	NA	NA	NA	NA	NFYC	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-61.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10chr1:41157242-41167933"	NA	inter
CUST_46256_PI429285431	1.7613308	A	2.1398802	A	0.769210627305886	0	lncRNA	50495-1_{1..734}	"gi|389565490|ref|NR_051966.1| Homo sapiens long intergenic non-protein coding RNA 359 (LINC00359), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|389565490|ref|NR_051966.1| Homo sapiens long intergenic non-protein coding RNA 359 (LINC00359), non-coding RNA"	Chr13	 97593535	 97594268	-	100887754	NR_051966.1	NA	NA	NA	NA	NA	inter
CUST_1752_PI429285431	5.391682	P	5.6819205	P	0.817766857761841	0	lncRNA	1738-1_{1..784}	"transcript_id ""ENST00000526807.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526807.1"" | genecode_v17"	chr4	 39654824	 39655607	+	ENSG00000255458.1	ENST00000526807.1	RP11-539G18.2	RP11-539G18.2-002	NA	NA	NA	inter
CUST_38427_PI429285431	8.241261	P	8.594622	P	0.782758405140876	0	lncRNA	39454-1_{1..1147}	n382512|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zqs.1||4.8103000|-0.1289829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382512|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zqs.1||4.8103000|-0.1289829	chr15	 43432318	 43433464	-	NA	NA	NA	NA	TMEM62	NA	chr15:43423217-43443465	inner
CUST_29636_PI429285431	4.910223	P	5.16295	P	0.839308443729464	0	lncRNA	31397-1_{1..223}	n333212|AF466289|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000080329|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000080329|0.0746589|-0.0551086	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333212|AF466289|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000080329|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000080329|0.0746589|-0.0551086	chr20	  3660171	  3660393	-	NA	NA	NA	NA	SIGLEC1	NA	chr20:3667617-3672731	inner
CUST_4740_PI429285431	0.89528155	A	0.89051664	A	1.00330824413261	0	lncRNA	4684-1_{1..337}	"transcript_id ""ENST00000555624.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555624.1"" | genecode_v17"	chr14	 21387520	 21387856	+	ENSG00000136315.3	ENST00000555624.1	RP11-84C10.2	RP11-84C10.2-001	NA	NA	NA	inter
CUST_42605_PI429285431	4.528844	P	4.7526855	P	0.856282353836299	0	lncRNA	45465-1_{1..115}	ENST00000391256 ncrna:snoRNA chromosome:GRCh37:2:10230332:10230446:-1 gene:ENSG00000212558 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391256 ncrna:snoRNA chromosome:GRCh37:2:10230332:10230446:-1 gene:ENSG00000212558 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 10230332	 10230446	-	ENSG00000212558	ENST00000391256	NA	NA	CYS1	NA	chr2:10220332-10220538	inter
CUST_46869_PI429285431	9.936864	P	10.228706	P	0.816858446305867	0	lncRNA	50999-1_{1..545}	"gi|283046791|ref|NR_033205.1| Homo sapiens HOXB cluster antisense RNA 3 (HOXB-AS3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|283046791|ref|NR_033205.1| Homo sapiens HOXB cluster antisense RNA 3 (HOXB-AS3), non-coding RNA"	Chr17	 46673320	 46673864	+	404266	NR_033205.1	NA	NA	NA	NA	NA	inter
CUST_41047_PI429285431	1.4255655	A	2.2525787	A	0.563695048497153	0	lncRNA	41708-1_{1..703}	n411716|NR_044997_4|lncRNA|Homosapiens||RefGeneNoncode|NR_044997_4||-0.7579600|-0.1454898	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411716|NR_044997_4|lncRNA|Homosapiens||RefGeneNoncode|NR_044997_4||-0.7579600|-0.1454898	chr6	  4661138	  4661840	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2164_PI429285431	5.248277	P	5.3278255	P	0.946353767431047	0	lncRNA	2156-1_{1..1227}	"transcript_id ""ENST00000504349.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504349.1"" | genecode_v17"	chr5	 55609732	 55610958	-	ENSG00000249697.1	ENST00000504349.1	RP11-155L15.1	RP11-155L15.1-001	NA	NA	NA	inter
CUST_35909_PI429285431	8.605319	P	8.659485	P	0.963151065140237	0	lncRNA	37281-2_{3001..6000}	n344556|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_104|NULL|-1.4892000|-0.2648711	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344556|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_104|NULL|-1.4892000|-0.2648711	chr6	 21669103	 21672102	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50"	NA	inter
CUST_50972_PI429285431	0.8962897	A	0.89235234	A	1.00273289755754	0	lncRNA	54614-1_{1..440}	hg19_lincRNAsTranscripts_TCONS_l2_00006359 range=chr12:93517737-93532846 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006359 range=chr12:93517737-93532846 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 93517737	 93518176	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41968_PI429285431	0.91336644	A	0.91029084	A	1.00213411746246	0	lncRNA	43762-1_{1..81}	ENST00000580543 ncrna:miRNA chromosome:GRCh37:18:35237098:35237178:1 gene:ENSG00000266530 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580543 ncrna:miRNA chromosome:GRCh37:18:35237098:35237178:1 gene:ENSG00000266530 gene_biotype:miRNA transcript_biotype:miRNA	chr18	 35237098	 35237178	+	ENSG00000266530	ENST00000580543	NA	NA	NA	NA	NA	inter
CUST_43788_PI429285431	7.1783752	P	6.515499	P	1.58323586587719	0	lncRNA	48519-1_{1..2426}	"gi|374429555|ref|NR_046236.1| Homo sapiens cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial (CMPK2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374429555|ref|NR_046236.1| Homo sapiens cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial (CMPK2), transcript variant 4, non-coding RNA"	Chr2	  6988440	  6990865	-	129607	NR_046236.1	NA	NA	NA	NA	NA	inter
CUST_35546_PI429285431	1.5777154	A	2.0614185	A	0.71513965048711	0	lncRNA	36961-1_{1..3000}	n342670|AL512762|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5172|NULL|-0.1118520|-0.1186262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342670|AL512762|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5172|NULL|-0.1118520|-0.1186262	chr17	 18283168	 18286167	-	NA	NA	NA	NA	EVPLL	"hg19_refFlat_EVPLL:range=chr17:18284252-182915625'pad=0,hg19_refFlat_EVPLL:range=chr17:18284252-182915625'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.30;hg19_refFlat_EVPL:range=chr17:74003184-740232795'pad=0,hg19_refFlat_EVPL:range=chr17:74003184-740232795'pad=0 3'pad=0 strand=- repeatMasking=none,-101.10chr17:18281079-18292961"	NA	inner
CUST_28329_PI429285431	3.1399674	P	3.5617406	P	0.746506537567431	0	lncRNA	29974-1_{1..664}	n325634|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045753|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045753|-0.9608680|-0.5087914	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325634|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045753|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045753|-0.9608680|-0.5087914	chr13	108760483	108761146	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5574_PI429285431	1.0645803	A	0.88719	A	1.13083645697626	0	lncRNA	5503-1_{1..558}	"transcript_id ""ENST00000415422.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415422.1"" | genecode_v17"	chr16	 62630276	 62630833	+	ENSG00000231589.1	ENST00000415422.1	AC009110.1	AC009110.1-001	NA	NA	NA	inter
CUST_41080_PI429285431	3.0207803	P	3.3229344	P	0.811040520483846	0	lncRNA	41763-1_{1..71}	ENST00000401213 ncrna:miRNA chromosome:GRCh37:X:145072385:145072455:-1 gene:ENSG00000216032 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401213 ncrna:miRNA chromosome:GRCh37:X:145072385:145072455:-1 gene:ENSG00000216032 gene_biotype:miRNA transcript_biotype:miRNA	chrX	145072385	145072455	-	ENSG00000216032	ENST00000401213	NA	NA	NA	NA	NA	inter
CUST_40533_PI429285431	3.1066947	P	1.5324585	A	2.97777799630144	0	lncRNA	41292-6_{15001..18000}	n409638|NR_034022|lncRNA|Homosapiens||RefGeneNoncode|NR_034022||2.9666000|-0.3061889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n409638|NR_034022|lncRNA|Homosapiens||RefGeneNoncode|NR_034022||2.9666000|-0.3061889	chr7	  7130400	  7133399	-	NA	NA	NA	NA	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.61;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00"	NA	inter
CUST_19074_PI429285431	1.0370251	A	1.0440795	A	0.995122197834296	0	lncRNA	20765-1_{1..842}	lnc-FAM75A7-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM75A7-4:3	chr9	 66529191	 66530032	-	lnc-FAM75A7-4	lnc-FAM75A7-4:3	ENSG00000234665	RP11-262H14.3	NA	NA	NA	inter
CUST_15642_PI429285431	3.472974	P	3.5383444	P	0.955699918056304	0	lncRNA	17333-1_{1..455}	lnc-FAM113B-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM113B-5:1	chr12	 47270358	 47270812	+	lnc-FAM113B-5	lnc-FAM113B-5:1	XLOC_009725	linc-FAM113B-2	NA	NA	NA	inter
LNCA_21_P0008121	10.902113	P	10.9720955	P	0.952649553685015	0	lncRNA	THC2744504	NA	NA	NA	NA	XLOC_010503	NA	NA	THC2744504	NA	"BROAD Institute lincRNA (XLOC_010503), lincRNA [TCONS_00021908]"	chr13:112548600-112548659	hs|13q34	Agilent_HUMAN_G3V2	THC2744504	THC2744504	chr13	112548600	112548659	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38939_PI429285431	4.083177	P	1.8394032	A	4.73634377836392	0	lncRNA	39926-2_{3001..3988}	n385079|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003srb.1||-0.1070150|-0.4723450	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385079|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003srb.1||-0.1070150|-0.4723450	chr7	  7287224	  7288211	+	NA	NA	NA	NA	C1GALT1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60chr7:7274224-7288251"	NA	inner
CUST_4588_PI429285431	0.9062716	A	0.8968802	A	1.00653085607294	0	lncRNA	4537-1_{1..420}	"transcript_id ""ENST00000445227.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445227.1"" | genecode_v17"	chr13	 34228796	 34229215	-	ENSG00000230490.2	ENST00000445227.1	RP11-141M1.3	RP11-141M1.3-002	NA	NA	NA	inner
CUST_51783_PI429285431	15.482914	P	15.512751	P	0.979530961672499	0	lncRNA	55332-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00012299 range=chr19:10151450-10186935 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012299 range=chr19:10151450-10186935 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 10154450	 10157449	+	NA	NA	NA	NA	C19orf66	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-14.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.76;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90chr19:10196806-10196935"	NA	inter
LNCA_21_P0007287	1.978913	A	1.0200092	A	1.94383235542477	0	lncRNA	TCONS_00019505	NA	NA	NA	NA	XLOC_009304	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009304), lincRNA [TCONS_00019505]"	chr11:119899628-119899687	hs|11q23.3	Agilent_HUMAN_G3V2	TCONS_00019505	TCONS_00019505	chr11	119899628	119899687	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27333_PI429285431	0.9018235	A	0.89586955	A	1.00413549129726	0	lncRNA	28893-1_{1..525}	n324488|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041093|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041093|-1.1251100|-0.5549177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324488|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041093|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041093|-1.1251100|-0.5549177	chr6	 65145646	 65146170	+	NA	NA	NA	NA	EYS	NA	chr6:65135646-65189393	inner
CUST_11509_PI429285431	3.525128	P	3.1446426	A	1.30177977031286	0	lncRNA	13079-1_{1..284}	lnc-PITX2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PITX2-2:1	chr4	111935119	111935402	-	lnc-PITX2-2	lnc-PITX2-2:1	XLOC_004045	linc-PITX2-1	NA	NA	NA	inter
CUST_37092_PI429285431	2.0170026	A	1.4752774	A	1.45571224311414	0	lncRNA	38218-1_{1..3000}	n345536|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1085|NULL|-1.3135300|-0.3133211	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n345536|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1085|NULL|-1.3135300|-0.3133211	chr2	 85187604	 85190603	+	NA	NA	NA	NA	KCMF1	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30chr2:85198231-85206649"	NA	inter
CUST_17430_PI429285431	1.0165536	A	1.6220784	A	0.657232259414221	0	lncRNA	19154-1_{1..227}	lnc-FAM65A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM65A-1:1	chr16	 67537928	 67538154	+	lnc-FAM65A-1	lnc-FAM65A-1:1	XLOC_011763	linc-AGRP-AS	NA	NA	NA	inter
CUST_17246_PI429285431	0.90872186	A	0.8944776	A	1.00992227117417	0	lncRNA	18964-1_{1..279}	lnc-GADD45G-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GADD45G-6:1	chr9	 92777663	 92777941	+	lnc-GADD45G-6	lnc-GADD45G-6:1	XLOC_007452	linc-SYK-1	NA	NA	NA	inter
CUST_15809_PI429285431	7.107773	P	5.445726	P	3.16465230084399	0	lncRNA	17499-1_{1..1874}	lnc-PRICKLE2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRICKLE2-3:1	chr3	 64447944	 64449817	-	lnc-PRICKLE2-3	lnc-PRICKLE2-3:1	XLOC_003146	linc-PRICKLE2-1	NA	NA	NA	inter
CUST_39206_PI429285431	3.1143198	A	3.913989	P	0.574480886894081	0	lncRNA	40181-1_{1..656}	n385992|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xrm.1||-0.6174950|-0.4460178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385992|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xrm.1||-0.6174950|-0.4460178	chr10	 75547342	 75547997	+	NA	NA	NA	NA	KIAA0913	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.84;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30chr10:75545382-75557998"	NA	inner
CUST_18908_PI429285431	1.1330827	A	1.6335373	A	0.706884003611512	0	lncRNA	20599-1_{1..2553}	lnc-TLX1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TLX1-2:4	chr10	102997696	103000248	+	lnc-TLX1-2	lnc-TLX1-2:4	ENSG00000227128	RP11-107I14.1	LBX1	NA	chr10:102987696-102988717	inter
CUST_25264_PI429285431	0.8939508	A	1.1803107	A	0.819968333370461	0	lncRNA	26795-1_{1..3000}	lnc-YES1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YES1-1:1	chr18	   903145	   906144	-	lnc-YES1-1	lnc-YES1-1:1	ENSG00000265179.1	RP11-672L10.2	ADCYAP1	"hg19_refFlat_ADCYAP1:range=chr18:905388-9096365'pad=0,hg19_refFlat_ADCYAP1:range=chr18:905388-9096365'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20chr18:904944-912173"	NA	inner
CUST_13782_PI429285431	6.5134807	P	7.0531635	P	0.687922143330091	0	lncRNA	15424-1_{1..337}	lnc-CLYBL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLYBL-1:1	chr13	100560309	100560645	+	lnc-CLYBL-1	lnc-CLYBL-1:1	XLOC_010480	linc-ZIC2	NA	NA	NA	inter
CUST_16124_PI429285431	3.4152293	P	3.9689066	P	0.681281388342398	0	lncRNA	17830-1_{1..690}	lnc-PCDH7-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH7-6:2	chr4	 32230210	 32230899	+	lnc-PCDH7-6	lnc-PCDH7-6:2	XLOC_003498	linc-DTHD1-8	NA	NA	NA	inter
CUST_37019_PI429285431	4.806964	P	4.7302265	P	1.05463040840988	0	lncRNA	38157-1_{1..1573}	n345474|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1023|NULL|-1.6264900|-0.3782103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345474|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1023|NULL|-1.6264900|-0.3782103	chr1	173980077	173981649	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3305_PI429285431	0.91265094	A	0.9051187	A	1.00523460383361	0	lncRNA	3284-1_{1..575}	"transcript_id ""ENST00000523510.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523510.1"" | genecode_v17"	chr8	128084939	128085513	-	ENSG00000253264.1	ENST00000523510.1	PCAT2	PCAT2-001	NA	NA	NA	inter
CUST_2777_PI429285431	9.708509	P	10.161716	P	0.730417380397146	0	lncRNA	2760-1_{1..1124}	"transcript_id ""ENST00000446399.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446399.1"" | genecode_v17"	chr7	 20336331	 20337454	+	ENSG00000226097.1	ENST00000446399.1	AC099342.1	AC099342.1-001	NA	NA	NA	inter
CUST_20242_PI429285431	0.91705066	A	1.6465614	A	0.603108410834555	0	lncRNA	21885-1_{1..730}	lnc-SLC47A2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC47A2-3:1	chr17	 19501210	 19501939	-	lnc-SLC47A2-3	lnc-SLC47A2-3:1	ENSG00000262769.1	RP11-1113L8.1	ALDH3A2	"hg19_refFlat_SLC47A1:range=chr17:19437253-194808665'pad=0,hg19_refFlat_SLC47A1:range=chr17:19437253-194808665'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30chr17:19506587-19511235"	NA	inter
CUST_43556_PI429285431	4.1482396	P	4.1376405	P	1.00737378975948	0	lncRNA	48331-1_{1..2844}	"gi|157427681|ref|NR_003928.1| Homo sapiens chitinase, acidic pseudogene 2 (CHIAP2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|157427681|ref|NR_003928.1| Homo sapiens chitinase, acidic pseudogene 2 (CHIAP2), non-coding RNA"	NA	NA	NA	NA	NA	NR_003928.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007610	2.1234975	A	1.8738098	A	1.18894971536033	0	lncRNA	TCONS_00020523	NA	NA	NA	NA	XLOC_009840	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009840), lincRNA [TCONS_00020523]"	chr12:93575860-93575919	hs|12q22	Agilent_HUMAN_G3V2	TCONS_00020523	TCONS_00020523	chr12	 93575860	 93575919	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50335_PI429285431	2.83036	P	3.0429206	A	0.863004148719002	0	lncRNA	54051-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00029080 range=chr9:132264726-132275305 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029080 range=chr9:132264726-132275305 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132270726	132273725	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00"	NA	inter
CUST_27917_PI429285431	4.001466	P	4.377412	P	0.770599951334524	0	lncRNA	29518-1_{1..465}	n325161|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331498|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331498|-1.3144400|-0.2895674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325161|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331498|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331498|-1.3144400|-0.2895674	chr2	114596320	114596784	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11237_PI429285431	6.4131694	P	6.4343905	P	0.985398308305058	0	lncRNA	12794-1_{1..718}	lnc-LRMP-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRMP-4:3	chr12	 24926905	 24927622	+	lnc-LRMP-4	lnc-LRMP-4:3	XLOC_009690	linc-LRMP-1	NA	"hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20"	NA	inter
CUST_3497_PI429285431	2.9832573	P	3.6327143	P	0.63752021767979	0	lncRNA	3468-1_{1..578}	"transcript_id ""ENST00000366109.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000366109.2"" | genecode_v17"	chr9	100000046	100000623	-	ENSG00000203279.2	ENST00000366109.2	RP11-498P14.5	RP11-498P14.5-001	NA	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-18.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-33.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0,hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.02;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90"	NA	inter
CUST_33882_PI429285431	5.4774704	P	5.4307046	P	1.03294669059994	0	lncRNA	35426-1_{1..537}	n340672|AF147424|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3135|NULL|-1.3845800|-0.2459484	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340672|AF147424|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3135|NULL|-1.3845800|-0.2459484	chr5	142326133	142326669	-	NA	NA	NA	NA	ARHGAP26	NA	chr5:142316133-142336670	inner
CUST_41205_PI429285431	0.9084888	A	0.8974804	A	1.00765962742743	0	lncRNA	42083-1_{1..89}	ENST00000385004 ncrna:miRNA chromosome:GRCh37:9:127455989:127456077:1 gene:ENSG00000207737 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385004 ncrna:miRNA chromosome:GRCh37:9:127455989:127456077:1 gene:ENSG00000207737 gene_biotype:miRNA transcript_biotype:miRNA	chr9	127455989	127456077	+	ENSG00000207737	ENST00000385004	NA	NA	NR6A1	NA	chr9:127445989-127466077	inner
CUST_39560_PI429285431	6.0944133	P	6.182436	P	0.94081130425737	0	lncRNA	40504-1_{1..1981}	n387504|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011fzu.1||-0.8463820|-0.3178103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387504|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011fzu.1||-0.8463820|-0.3178103	chr6	  2319162	  2321142	+	NA	NA	NA	NA	NA	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50"	NA	inter
LNCA_33_P3330079	3.6210535	P	5.6521363	P	0.244671369873617	0	lncRNA	XR_110532	XR_110532	XR_110532	100128242	Hs.651710	LOC100128242	uncharacterized LOC100128242	ENST00000533341	THC2635860	NA	"PREDICTED: Homo sapiens hypothetical LOC100128242 (LOC100128242), miscRNA [XR_110532]"	chr11:123306328-123306387	hs|11q24.1	Agilent_HUMAN_G3V2	XR_110532	XR_110532	chr11	123306328	123306387	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2738_PI429285431	1.0527635	A	1.3396779	A	0.81965323900716	0	lncRNA	2723-1_{1..3000}	"transcript_id ""ENST00000567533.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567533.1"" | genecode_v17"	chr7	   161765	   164764	-	ENSG00000261795.1	ENST00000567533.1	RP11-90P13.1	RP11-90P13.1-001	NA	NA	NA	inter
CUST_35378_PI429285431	5.1825523	P	5.082766	P	1.07161471725742	0	lncRNA	36786-1_{1..2296}	n342425|CR592222|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4918|NULL|3.4134000|-0.0978026	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342425|CR592222|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4918|NULL|3.4134000|-0.0978026	chr19	 51827048	 51829343	+	NA	NA	NA	NA	VSIG10L	NA	chr19:51834795-51843589	inner
CUST_16515_PI429285431	0.9025453	A	0.9006201	A	1.00133533772253	0	lncRNA	18215-1_{1..354}	lnc-ANKRD27-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD27-4:1	chr19	 32562957	 32563310	-	lnc-ANKRD27-4	lnc-ANKRD27-4:1	XLOC_013298	linc-TSHZ3-2	NA	NA	NA	inter
CUST_32694_PI429285431	2.255278	A	2.4139714	A	0.895836031973374	0	lncRNA	34340-1_{1..1589}	n339323|BC043543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1755|NULL|-0.5097460|-0.2842248	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339323|BC043543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1755|NULL|-0.5097460|-0.2842248	chr16	 87245727	 87247315	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3689_PI429285431	0.91856337	A	0.9216187	A	0.99788444756698	0	lncRNA	3657-1_{1..184}	"transcript_id ""ENST00000418196.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418196.2"" | genecode_v17"	chr10	 47570513	 47570696	-	ENSG00000226667.2	ENST00000418196.2	RP11-292F22.5	RP11-292F22.5-001	NA	NA	NA	inter
CUST_33225_PI429285431	0.9117825	A	0.9275098	A	0.989157870554649	0	lncRNA	34814-1_{1..1715}	n339924|BC039507|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2373|NULL|-0.7768660|-0.1698038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339924|BC039507|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2373|NULL|-0.7768660|-0.1698038	chr18	 72076682	 72078396	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14059_PI429285431	6.1083856	P	6.310471	P	0.869293100962485	0	lncRNA	15705-1_{1..511}	lnc-NOM1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOM1-3:1	chr7	156776728	156777238	+	lnc-NOM1-3	lnc-NOM1-3:1	XLOC_006312	linc-UBE3C-3	NA	NA	NA	inter
CUST_4710_PI429285431	6.128111	P	6.621192	P	0.710506129159876	0	lncRNA	4657-1_{1..533}	"transcript_id ""ENST00000548416.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548416.1"" | genecode_v17"	chr14	 19642023	 19642555	+	ENSG00000258314.2	ENST00000548416.1	CTD-2314B22.1	CTD-2314B22.1-002	NA	NA	NA	inter
CUST_6881_PI429285431	2.2601542	A	2.2953448	A	0.975902821977523	0	lncRNA	6832-1_{1..750}	"transcript_id ""ENST00000455701.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455701.1"" | genecode_v17"	chr21	 43442132	 43442881	+	ENSG00000237232.3	ENST00000455701.1	ZNF295-AS1	ZNF295-AS1-003	NA	NA	NA	inter
CUST_46599_PI429285431	0.92932206	A	0.9208849	A	1.00586532773534	0	lncRNA	50781-1_{1..2740}	"gi|148806898|ref|NR_003569.1| Homo sapiens ATP-binding cassette, sub-family C, member 6 pseudogene 1 (ABCC6P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|148806898|ref|NR_003569.1| Homo sapiens ATP-binding cassette, sub-family C, member 6 pseudogene 1 (ABCC6P1), non-coding RNA"	Chr16	 18582570	 18585309	+	653190	NR_003569.1	NA	NA	NA	NA	NA	inter
CUST_21695_PI429285431	2.8973398	P	2.8318982	A	1.04640518891221	0	lncRNA	23306-1_{1..400}	lnc-NT5C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-NT5C-1:1	chr17	 73137159	 73137558	-	lnc-NT5C-1	lnc-NT5C-1:1	ENSG00000265800.1	RP11-649A18.5	HN1	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10chr17:73131343-73147445"	NA	inner
CUST_42996_PI429285431	3.7811458	P	4.2794657	P	0.70793072671244	0	lncRNA	46156-1_{1..153}	ENST00000391069 ncrna:snoRNA chromosome:GRCh37:14:77932627:77932779:1 gene:ENSG00000212371 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391069 ncrna:snoRNA chromosome:GRCh37:14:77932627:77932779:1 gene:ENSG00000212371 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 77932627	 77932779	+	ENSG00000212371	ENST00000391069	NA	NA	VIPAR	NA	chr14:77922627-77923983	inner
CUST_34044_PI429285431	5.955618	P	6.432436	P	0.71856073099324	0	lncRNA	35576-1_{1..1120}	n340862|BC035502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3327|NULL|-1.1341500|-0.2132638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340862|BC035502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3327|NULL|-1.1341500|-0.2132638	chr6	 17706487	 17707606	+	NA	NA	NA	NA	NUP153	"hg19_refFlat_NUP153:range=chr6:17616328-177066185'pad=0,hg19_refFlat_NUP153:range=chr6:17616328-177066185'pad=0 3'pad=0 strand=- repeatMasking=none,-105.80chr6:17696487-17706818"	NA	inner
CUST_20600_PI429285431	0.92149025	A	0.9087138	A	1.00889529032744	0	lncRNA	22239-1_{1..754}	lnc-DLX2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DLX2-3:2	chr2	173330552	173331305	-	lnc-DLX2-3	lnc-DLX2-3:2	ENSG00000232788.1	AC078883.3	ITGA6	"hg19_refFlat_ITGA6:range=chr2:173292517-1733689805'pad=0,hg19_refFlat_ITGA6:range=chr2:173292517-1733689805'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.90;hg19_refFlat_ITGA6:range=chr2:173292517-1733666075'pad=0,hg19_refFlat_ITGA6:range=chr2:173292517-1733666075'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.90chr2:173320552-173340740"	NA	inner
CUST_22576_PI429285431	3.1650848	P	3.1658492	P	0.999470298636509	0	lncRNA	24163-1_{1..568}	lnc-THBS3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THBS3-1:1	chr1	155183431	155183998	-	lnc-THBS3-1	lnc-THBS3-1:1	ENSG00000236263.1	RP11-263K19.6	THBS3	"hg19_refFlat_MTX1:range=chr1:155178596-1551834895'pad=0,hg19_refFlat_MTX1:range=chr1:155178596-1551834895'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.80chr1:155173431-155177690"	NA	inner
CUST_3059_PI429285431	1.5222495	A	1.1687769	A	1.27763221914858	0	lncRNA	3038-1_{1..661}	"transcript_id ""ENST00000521541.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521541.1"" | genecode_v17"	chr8	 33865374	 33866034	+	ENSG00000253642.1	ENST00000521541.1	RP11-317N12.1	RP11-317N12.1-002	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00"	NA	inter
CUST_8818_PI429285431	0.90272963	A	0.9080627	A	0.996310221589392	0	lncRNA	10357-1_{1..2147}	lnc-SPAM1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPAM1-4:2	chr7	124817698	124819844	+	lnc-SPAM1-4	lnc-SPAM1-4:2	ENSG00000224897	RP11-3B12.1	NA	NA	NA	inter
CUST_5799_PI429285431	3.5879543	P	3.6638706	P	0.948739356003813	0	lncRNA	5722-1_{1..895}	"transcript_id ""ENST00000582320.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582320.2"" | genecode_v17"	chr17	 27188090	 27188984	-	ENSG00000264066.2	ENST00000582320.2	MIR4732	MIR4732-001	ERAL1	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20chr17:27182043-27188072"	NA	inter
CUST_21078_PI429285431	6.1090894	P	5.8705115	P	1.17982910147333	0	lncRNA	22704-1_{1..581}	lnc-FN1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FN1-3:3	chr2	216696152	216696732	-	lnc-FN1-3	lnc-FN1-3:3	ENSG00000235770.1	LINC00607	NA	NA	NA	inter
CUST_10397_PI429285431	0.9070823	A	0.9238908	A	0.98841684295714	0	lncRNA	11925-1_{1..3000}	lnc-FOXA2-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXA2-8:2	chr20	 22262992	 22265991	-	lnc-FOXA2-8	lnc-FOXA2-8:2	XLOC_013679	linc-NKX2-2-1	NA	"hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60"	NA	inter
CUST_24939_PI429285431	2.6410642	A	2.0736184	A	1.48189764107876	0	lncRNA	26479-1_{1..207}	lnc-ZWINT-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZWINT-5:1	chr10	 56628799	 56629005	-	lnc-ZWINT-5	lnc-ZWINT-5:1	ENSG00000236958.1	RP11-264A11.1	NA	NA	NA	inter
CUST_24795_PI429285431	3.8216228	P	4.1379185	P	0.803129367582569	0	lncRNA	26338-1_{1..432}	lnc-C11orf39-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf39-2:2	chr11	131410414	131410845	-	lnc-C11orf39-2	lnc-C11orf39-2:2	ENSG00000237654.1	AP003025.2	NTM	NA	chr11:131400414-131420510	inner
CUST_35537_PI429285431	0.9140495	A	0.9225614	A	0.994117371331365	0	lncRNA	36954-1_{1..3000}	n342661|BC037339|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5163|NULL|-0.7170510|-0.1934226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342661|BC037339|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5163|NULL|-0.7170510|-0.1934226	chr17	 16915229	 16918228	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_46491_PI429285431	1.2999551	A	1.7866927	A	0.713637038659281	0	lncRNA	50684-2_{3001..5762}	"gi|338827612|ref|NR_040052.1| Homo sapiens IQCH antisense RNA 1 (IQCH-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|338827612|ref|NR_040052.1| Homo sapiens IQCH antisense RNA 1 (IQCH-AS1), transcript variant 2, non-coding RNA"	Chr15	 67698949	 67701710	-	100506686	NR_040052.1	NA	NA	NA	"hg19_refFlat_C15orf61:range=chr15:67813587-678188835'pad=0,hg19_refFlat_C15orf61:range=chr15:67813587-678188835'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.80;hg19_refFlat_IQCH:range=chr15:67547235-677930845'pad=0,hg19_refFlat_IQCH:range=chr15:67547235-677930845'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80"	NA	inter
CUST_30483_PI429285431	5.8956423	P	3.1421754	A	6.74335663825665	0	lncRNA	32263-1_{1..279}	n335632|CR604309|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000283504|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000283504|-1.0295100|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335632|CR604309|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000283504|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000283504|-1.0295100|-1.0000000	chr1	 55532032	 55532310	-	NA	NA	NA	NA	USP24	NA	chr1:55532032-55542311	inner
CUST_23757_PI429285431	1.1057191	A	0.91205895	A	1.14366153361754	0	lncRNA	25320-1_{1..454}	lnc-RPS4Y1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS4Y1-1:1	chrY	  2799752	  2800205	+	lnc-RPS4Y1-1	lnc-RPS4Y1-1:1	ENSG00000251037.1	AC006157.2	ZFY	NA	chrY:2803112-2810041	inter
CUST_10115_PI429285431	0.89748347	A	0.9046002	A	0.995079205639154	0	lncRNA	11640-1_{1..542}	lnc-STAP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STAP1-3:1	chr4	 66744447	 66744988	+	lnc-STAP1-3	lnc-STAP1-3:1	XLOC_003561	linc-STAP1-3	NA	NA	NA	inter
CUST_21069_PI429285431	0.91381043	A	0.909266	A	1.00315492517532	0	lncRNA	22696-1_{1..518}	lnc-C14orf126-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C14orf126-6:1	chr14	 32887014	 32887531	-	lnc-C14orf126-6	lnc-C14orf126-6:1	ENSG00000258580.1	RP11-320M16.2	AKAP6	NA	chr14:32877014-32897180	inner
CUST_12823_PI429285431	0.9155422	A	0.9269513	A	0.992123001935055	0	lncRNA	14450-1_{1..2439}	lnc-ZNF727-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF727-7:1	chr7	 63173845	 63176283	+	lnc-ZNF727-7	lnc-ZNF727-7:1	XLOC_006118	linc-ZNF727-5	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70"	NA	inter
CUST_46670_PI429285431	2.7326188	A	2.7811463	A	0.966922724049165	0	lncRNA	50838-2_{3001..4298}	"gi|153791676|ref|NR_003610.1| Homo sapiens pyridoxal-dependent decarboxylase domain containing 2, pseudogene (PDXDC2P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|153791676|ref|NR_003610.1| Homo sapiens pyridoxal-dependent decarboxylase domain containing 2, pseudogene (PDXDC2P), non-coding RNA"	Chr16	 70013200	 70014497	-	283970	NR_003610.1	NA	NA	NA	NA	NA	inter
CUST_8053_PI429285431	7.964926	P	7.509381	P	1.37130073686072	0	lncRNA	9661-1_{1..505}	lnc-CHIT1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CHIT1-1:2	chr1	203274185	203274689	-	lnc-CHIT1-1	lnc-CHIT1-1:2	ENSG00000233791	RP11-134P9.1	BTG2	NA	chr1:203274664-203278730	inter
LNCA_21_P0005047	0.9257264	A	1.2958714	A	0.773704730631635	0	lncRNA	TCONS_00012236	NA	NA	NA	NA	XLOC_005793	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005793), lincRNA [TCONS_00012236]"	chr6:104910862-104910803	hs|6q16.3	Agilent_HUMAN_G3V2	TCONS_00012236	TCONS_00012236	chr6	104910803	104910862	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35188_PI429285431	0.8965391	A	0.89645016	A	1.00006165041055	0	lncRNA	36589-1_{1..769}	n342168|BC029474|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4655|NULL|-1.2074700|-0.4708967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342168|BC029474|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4655|NULL|-1.2074700|-0.4708967	chr6	163894451	163895219	+	NA	NA	NA	NA	QKI	NA	chr6:163884451-163905192	inner
LNCA_21_P0013017	0.92541724	A	0.91985214	A	1.00386488284619	0	lncRNA	TCONS_l2_00024062	NA	NA	NA	NA	XLOC_l2_012418	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012418), lincRNA [TCONS_l2_00024062]"	chr6:17034142-17034201	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_l2_00024062	TCONS_l2_00024062	chr6	 17034142	 17034201	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20730_PI429285431	3.533232	P	4.4621716	P	0.525244261468435	0	lncRNA	22364-1_{1..667}	lnc-TRAPPC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRAPPC4-1:1	chr11	118916097	118916763	+	lnc-TRAPPC4-1	lnc-TRAPPC4-1:1	ENSG00000255114.1	RP11-110I1.6	HYOU1	NA	chr11:118914896-118926205	inner
CUST_8780_PI429285431	14.387434	P	13.301223	P	2.12315691550177	0	lncRNA	10321-1_{1..979}	lnc-SERPINC1-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:13	chr1	173837098	173838076	-	lnc-SERPINC1-1	lnc-SERPINC1-1:13	ENSG00000234741	GAS5	DARS2	NA	chr1:173827098-173827682	inter
CUST_38455_PI429285431	1.9604472	A	2.6580844	A	0.616581197252425	0	lncRNA	39475-1_{1..1258}	n382772|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002buf.2||-1.2749500|-0.3559949	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382772|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002buf.2||-1.2749500|-0.3559949	chr15	 98080198	 98081455	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006317	0.92358375	A	0.9156318	A	1.00552709003501	0	lncRNA	TCONS_00016473	NA	NA	NA	NA	XLOC_007842	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007842), lincRNA [TCONS_00016473]"	chr9:121406674-121406615	hs|9q33.1	Agilent_HUMAN_G3V2	TCONS_00016473	TCONS_00016473	chr9	121406615	121406674	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23601_PI429285431	0.91107225	A	0.90107894	A	1.00695088065895	0	lncRNA	25167-1_{1..357}	lnc-DSCR4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DSCR4-2:1	chr21	 39091650	 39092006	-	lnc-DSCR4-2	lnc-DSCR4-2:1	ENSG00000233213.1	KCNJ6-IT1	KCNJ6	NA	chr21:39081650-39101872	inner
CUST_16227_PI429285431	1.4807056	A	0.9158531	A	1.47923626557154	0	lncRNA	17934-1_{1..218}	lnc-ZNF22-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF22-1:1	chr10	 45587756	 45587973	+	lnc-ZNF22-1	lnc-ZNF22-1:1	XLOC_008477	linc-ALOX5-1	NA	NA	NA	inter
LNCA_21_P0004797	0.9193915	A	0.90904367	A	1.00719835367394	0	lncRNA	ENST00000427460	NA	NA	NA	NA	XLOC_005898	NA	ENST00000427460	NA	NA	"BROAD Institute lincRNA (XLOC_005898), lincRNA [TCONS_00011604]"	chr6:159775062-159775003	hs|6q25.3	Agilent_HUMAN_G3V2	ENST00000427460	ENST00000427460	chr6	159775003	159775062	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36401_PI429285431	0.89914995	A	1.7395778	A	0.558477920575319	0	lncRNA	37619-1_{1..523}	n344918|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_467|NULL|-1.3011200|-0.2882502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344918|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_467|NULL|-1.3011200|-0.2882502	chr6	 94523584	 94524106	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32470_PI429285431	4.546586	P	5.9134173	P	0.387741940711408	0	lncRNA	34139-1_{1..1648}	n339072|AK025054|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1502|NULL|-1.2153800|-0.3382333	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339072|AK025054|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1502|NULL|-1.2153800|-0.3382333	chr2	198093722	198095369	-	NA	NA	NA	NA	ANKRD44	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90chr2:198083722-198105300"	NA	inner
CUST_25590_PI429285431	0.9037026	A	0.8976944	A	1.00417325074958	0	lncRNA	27120-1_{1..788}	lnc-ARF5-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARF5-3:2	chr7	126868427	126869214	+	lnc-ARF5-3	lnc-ARF5-3:2	ENSG00000236340.1	AC000099.1	GRM8	NA	chr7:126858427-126879087	inter
CUST_39247_PI429285431	1.4185857	A	1.2292877	A	1.14020876745372	0	lncRNA	40218-1_{1..1126}	n386107|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010azu.1||2.6965000|-0.2035951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386107|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010azu.1||2.6965000|-0.2035951	chr15	 30916696	 30917821	+	NA	NA	NA	NA	GOLGA8H	NA	chr15:30906696-30906859	inter
CUST_17518_PI429285431	3.6202993	P	4.5576944	P	0.522174857762186	0	lncRNA	19243-1_{1..3000}	lnc-TPM4-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPM4-2:10	chr19	 16135263	 16138262	+	lnc-TPM4-2	lnc-TPM4-2:10	XLOC_012983	linc-TPM4-2	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.39;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20"	NA	inter
CUST_20806_PI429285431	1.426376	A	1.3983753	A	1.01959817771019	0	lncRNA	22437-1_{1..406}	lnc-EID1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EID1-3:1	chr15	 49076095	 49076500	+	lnc-EID1-3	lnc-EID1-3:1	ENSG00000259670.1	RP11-485O10.2	CEP152	"hg19_refFlat_CEP152:range=chr15:49030446-490978465'pad=0,hg19_refFlat_CEP152:range=chr15:49030446-490978465'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80chr15:49066095-49086318"	NA	inner
CUST_11143_PI429285431	6.2911983	P	5.996958	P	1.22623908943359	0	lncRNA	12700-1_{1..777}	lnc-CBLN4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLN4-1:1	chr20	 54744201	 54744977	-	lnc-CBLN4-1	lnc-CBLN4-1:1	XLOC_013807	linc-CBLN4-1	NA	NA	NA	inter
CUST_3647_PI429285431	1.4683708	A	2.5783436	A	0.463302765789403	0	lncRNA	3616-1_{1..347}	"transcript_id ""ENST00000433770.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433770.1"" | genecode_v17"	chr10	 31982012	 31982358	-	ENSG00000237797.1	ENST00000433770.1	RP11-472N13.3	RP11-472N13.3-001	NA	NA	NA	inter
CUST_27810_PI429285431	4.136167	P	4.1745877	P	0.973720283470166	0	lncRNA	29396-1_{1..504}	n325038|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078287|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078287|-1.1488700|-0.2809117	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325038|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078287|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078287|-1.1488700|-0.2809117	chr20	 22208865	 22209368	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28083_PI429285431	0.9066636	A	0.9107269	A	0.997187497577637	0	lncRNA	29704-1_{1..418}	n325354|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325123|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325123|-1.3462900|-0.3701144	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325354|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325123|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325123|-1.3462900|-0.3701144	chr2	 31872395	 31872812	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13826_PI429285431	1.5754596	A	0.90249306	A	1.59434797541055	0	lncRNA	15469-1_{1..1633}	lnc-THBS2-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THBS2-3:4	chr6	169562447	169564079	-	lnc-THBS2-3	lnc-THBS2-3:4	XLOC_005935	linc-DACT2-1	NA	NA	NA	inter
CUST_12841_PI429285431	12.688407	P	12.834776	P	0.903521602291349	0	lncRNA	14468-1_{1..807}	lnc-KIF25-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIF25-2:3	chr6	168631587	168632393	+	lnc-KIF25-2	lnc-KIF25-2:3	XLOC_005544	linc-SMOC2-3	NA	NA	NA	inter
LNCA_21_P0003126	6.322032	P	6.673636	P	0.783712275698426	0	lncRNA	TCONS_00006527	NA	NA	NA	NA	XLOC_003152	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003152), lincRNA [TCONS_00006527]"	chr3:66831334-66831275	hs|3p14.1	Agilent_HUMAN_G3V2	TCONS_00006527	TCONS_00006527	chr3	 66831275	 66831334	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22615_PI429285431	2.906901	A	2.305594	A	1.5170903420645	0	lncRNA	24200-1_{1..2372}	lnc-C8orf22-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C8orf22-3:1	chr8	 49609117	 49611488	+	lnc-C8orf22-3	lnc-C8orf22-3:1	ENSG00000253608.1	RP11-770E5.1	NA	NA	NA	inter
CUST_9206_PI429285431	6.162508	P	6.549299	P	0.764828929970597	0	lncRNA	10718-1_{1..2265}	lnc-SLC39A11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SLC39A11-1:1	chr17	 70636510	 70638774	-	lnc-SLC39A11-1	lnc-SLC39A11-1:1	ENSG00000245411	AC080037.2	SLC39A11	NA	chr17:70642085-70646611	inter
LNCA_21_P0005735	0.91134644	A	0.89947885	A	1.00825991293809	0	lncRNA	THC2634213	NA	NA	NA	NA	XLOC_006870	NA	NA	THC2634213	NA	"BROAD Institute lincRNA (XLOC_006870), lincRNA [TCONS_00014793]"	chr8:093695535-093695594	hs|8q22.1	Agilent_HUMAN_G3V2	THC2634213	THC2634213	chr8	 93695535	 93695594	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35997_PI429285431	0.8958972	A	0.8965926	A	0.999518101600989	0	lncRNA	37333-1_{1..1685}	n344608|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_156|NULL|-1.3974700|-0.3590917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344608|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_156|NULL|-1.3974700|-0.3590917	chr12	 76657143	 76658827	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002057	0.9110263	A	0.8990883	A	1.00830912175274	0	lncRNA	ENST00000424119	NA	AL355732	NA	NA	XLOC_002125	NA	ENST00000424119	THC2726673	NA	"BROAD Institute lincRNA (XLOC_002125), lincRNA [TCONS_00003303]"	chr2:64565264-64565205	hs|2p14	Agilent_HUMAN_G3V2	ENST00000424119	ENST00000424119	chr2	 64565205	 64565264	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23720_PI429285431	1.1110315	A	0.91336644	A	1.146840739655	0	lncRNA	25284-1_{1..2261}	lnc-AP002478.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AP002478.1-1:2	chr18	  3606552	  3608812	+	lnc-AP002478.1-1	lnc-AP002478.1-1:2	ENSG00000262001.1	RP11-874J12.1	DLGAP1	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr18:3596552-3618334"	NA	inner
CUST_3779_PI429285431	6.4492545	P	6.3831506	P	1.04688567386391	0	lncRNA	3747-1_{1..520}	"transcript_id ""ENST00000450947.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450947.2"" | genecode_v17"	chr10	104225738	104226257	+	ENSG00000243628.2	ENST00000450947.2	RP11-18I14.7	RP11-18I14.7-002	ACTR1A	NA	chr10:104238986-104239783	inner
CUST_6784_PI429285431	0.91392267	A	0.9540472	A	0.972570993777096	0	lncRNA	6732-1_{1..437}	"transcript_id ""ENST00000444868.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444868.1"" | genecode_v17"	chr21	 18126838	 18127274	-	ENSG00000237735.1	ENST00000444868.1	AP000473.6	AP000473.6-001	NA	NA	NA	inter
CUST_47866_PI429285431	5.1769013	P	5.0027947	P	1.12826550133847	0	lncRNA	51766-2_{3001..6000}	"gi|410171204|ref|XR_171193.1| PREDICTED: Homo sapiens myomegalin-like (LOC101060463), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171204|ref|XR_171193.1| PREDICTED: Homo sapiens myomegalin-like (LOC101060463), misc_RNA"	NA	NA	NA	NA	NA	XR_171193.1	NA	NA	NA	NA	NA	Unknown
CUST_11624_PI429285431	1.4119428	A	0.9044153	A	1.42161173937012	0	lncRNA	13203-1_{1..3000}	lnc-EPHA4-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPHA4-2:3	chr2	221671695	221674694	-	lnc-EPHA4-2	lnc-EPHA4-2:3	XLOC_002498	linc-OBSL1-4	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
CUST_32023_PI429285431	0.90912265	A	0.9144281	A	0.996329295857311	0	lncRNA	33744-1_{1..1593}	n338588|AF091526|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|994|NULL|-1.1063900|-0.3107274	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338588|AF091526|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|994|NULL|-1.1063900|-0.3107274	chr13	 20768550	 20770142	+	NA	NA	NA	NA	GJB2	NA	chr13:20761602-20767114	inter
CUST_34730_PI429285431	0.9055874	A	1.6208832	A	0.609080237524944	0	lncRNA	36175-1_{1..1311}	n341636|BC035363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4107|NULL|-0.8997080|-0.1334958	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341636|BC035363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4107|NULL|-0.8997080|-0.1334958	chr8	144790220	144791530	+	NA	NA	NA	NA	MAPK15	"hg19_refFlat_CCDC166:range=chr8:144788864-1447902795'pad=0,hg19_refFlat_CCDC166:range=chr8:144788864-1447902795'pad=0 3'pad=0 strand=- repeatMasking=none,-105.00chr8:144798507-144804633"	NA	inner
CUST_15972_PI429285431	0.89533293	A	0.8865086	A	1.00613530380713	0	lncRNA	17670-1_{1..680}	lnc-OLFM4-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OLFM4-6:1	chr13	 55560355	 55561034	+	lnc-OLFM4-6	lnc-OLFM4-6:1	XLOC_010401	linc-PRR20A-1	NA	NA	NA	inter
CUST_3538_PI429285431	3.7146926	P	3.3080225	P	1.32562259650648	0	lncRNA	3508-1_{1..316}	"transcript_id ""ENST00000441473.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441473.1"" | genecode_v17"	chr9	128819859	128820174	+	ENSG00000232413.1	ENST00000441473.1	RP11-343J18.2	RP11-343J18.2-001	NA	NA	NA	inter
CUST_6715_PI429285431	0.892599	A	1.1172011	A	0.85583103412707	0	lncRNA	6663-1_{1..686}	"transcript_id ""ENST00000421019.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421019.1"" | genecode_v17"	chr20	 48894071	 48894756	+	ENSG00000224397.1	ENST00000421019.1	RP11-290F20.3	RP11-290F20.3-004	NA	NA	NA	inter
LNCA_21_P0013181	1.7739365	A	1.6767831	A	1.06966081756584	0	lncRNA	ENST00000439058	XR_108746	XR_108746	NA	Hs.59203	XLOC_l2_013301	NA	ENST00000439058	THC2641473	NA	"PREDICTED: Homo sapiens hypothetical LOC100506098, transcript variant 3 (LOC100506098), miscRNA [XR_108746]"	chr7:20261174-20261233	hs|7p21.1	Agilent_HUMAN_G3V2	ENST00000439058	ENST00000439058	chr7	 20261174	 20261233	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48221_PI429285431	2.9691935	A	2.2238584	A	1.67636359916058	0	lncRNA	52084-1_{1..1800}	hg19_lincRNAsTranscripts_TCONS_l2_00002625 range=chr1:142803225-142888797 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002625 range=chr1:142803225-142888797 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	142803225	142805024	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10356_PI429285431	4.0772824	P	4.891152	P	0.568854028276026	0	lncRNA	11882-1_{1..1846}	lnc-C22orf26-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C22orf26-2:12	chr22	 46438464	 46440309	-	lnc-C22orf26-2	lnc-C22orf26-2:12	XLOC_014404	linc-WNT7B-2	C22orf26	NA	chr22:46446339-46449179	inter
CUST_15775_PI429285431	0.890945	A	1.3576922	A	0.723594225511788	0	lncRNA	17465-1_{1..703}	lnc-CA5A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CA5A-3:1	chr16	 88148120	 88148822	-	lnc-CA5A-3	lnc-CA5A-3:1	XLOC_012056	linc-CA5A-1	NA	NA	NA	inter
CUST_30456_PI429285431	13.576486	P	13.229355	P	1.27202850458903	0	lncRNA	32236-1_{1..923}	n335597|CR595839|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000275034|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000275034|3.0504800|-0.1345406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335597|CR595839|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000275034|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000275034|3.0504800|-0.1345406	chr4	  3514296	  3515218	-	NA	NA	NA	NA	LRPAP1	NA	chr4:3505324-3530638	inner
CUST_34062_PI429285431	0.90736336	A	1.0395887	A	0.912422962616249	0	lncRNA	35592-1_{1..3000}	n340882|BC044837|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3347|NULL|-0.3108060|-0.0905161	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340882|BC044837|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3347|NULL|-0.3108060|-0.0905161	chr17	 75369899	 75372898	-	NA	NA	NA	NA	9-Sep	NA	chr17:75359899-75383318	inner
CUST_1638_PI429285431	5.126574	P	5.2057076	P	0.94662596538816	0	lncRNA	1623-1_{1..868}	"transcript_id ""ENST00000420851.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420851.2"" | genecode_v17"	chr3	195415255	195416122	+	ENSG00000242086.3	ENST00000420851.2	AC069513.3	AC069513.3-013	MUC20	NA	chr3:195447753-195448560	inter
CUST_34035_PI429285431	4.953523	P	5.1297965	P	0.884985976792073	0	lncRNA	35567-2_{3001..3255}	n340852|AL831898|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3316|NULL|1.6994200|-0.2450249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340852|AL831898|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3316|NULL|1.6994200|-0.2450249	chr6	 13361066	 13361320	-	NA	NA	NA	NA	GFOD1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90chr6:13363587-13371194"	NA	inter
CUST_44747_PI429285431	5.5990853	P	5.703141	P	0.930413735318852	0	lncRNA	49295-1_{1..742}	"gi|310119763|ref|XR_108641.1| PREDICTED: Homo sapiens uncharacterized LOC100505550 (LOC100505550), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310119763|ref|XR_108641.1| PREDICTED: Homo sapiens uncharacterized LOC100505550 (LOC100505550), misc_RNA"	Chr6	 37511329	 37512070	-	100505550	XR_108641.1	NA	NA	NA	NA	NA	inter
CUST_6978_PI429285431	2.7215781	A	3.1557312	P	0.740128101821406	0	lncRNA	6926-1_{1..437}	"transcript_id ""ENST00000447396.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447396.1"" | genecode_v17"	chr22	 33501369	 33501805	-	ENSG00000228622.1	ENST00000447396.1	RP1-302D9.1	RP1-302D9.1-001	NA	NA	NA	inter
CUST_44013_PI429285431	5.006113	P	3.3778439	P	3.09141877450574	0	lncRNA	48702-1_{1..3000}	"gi|371118942|ref|NR_045772.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 11, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371118942|ref|NR_045772.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 11, non-coding RNA"	Chr2	175936978	175939977	-	1386	NR_045772.1	NA	NA	NA	NA	NA	inter
CUST_28679_PI429285431	0.9151387	A	0.9139322	A	1.0008366318547	0	lncRNA	30375-1_{1..399}	n326063|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046743|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046743|-0.7863250|-0.2567188	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326063|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046743|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046743|-0.7863250|-0.2567188	chr10	 10868608	 10869006	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37895_PI429285431	2.818669	A	4.0958114	P	0.412611975728468	0	lncRNA	38985-1_{1..577}	n346433|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1983|NULL|-1.3579600|-0.1694265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346433|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1983|NULL|-1.3579600|-0.1694265	chr9	 43822612	 43823188	+	NA	NA	NA	NA	LOC100653009	NA	chr9:43812612-43886034	inner
LNCA_21_P0004891	0.91967934	A	0.9077616	A	1.00829496200394	0	lncRNA	TCONS_00011838	NA	NA	NA	NA	XLOC_005322	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005322), lincRNA [TCONS_00011838]"	chr6:52506024-52506083	hs|6p12.2	Agilent_HUMAN_G3V2	TCONS_00011838	TCONS_00011838	chr6	 52506024	 52506083	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19961_PI429285431	3.2932527	P	3.3920631	P	0.933802657855658	0	lncRNA	21615-1_{1..1182}	lnc-TTC30B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTC30B-1:3	chr2	178257301	178258482	-	lnc-TTC30B-1	lnc-TTC30B-1:3	ENSG00000213963.2	AC074286.1	AGPS	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70chr2:178257471-178267409"	NA	inter
LNCA_21_P0011782	0.92149854	A	0.9095879	A	1.0082899998488	0	lncRNA	ENST00000455455	NA	AK302997	NA	NA	XLOC_l2_007070	NA	ENST00000455455	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007070), lincRNA [TCONS_l2_00013141]"	chr19:45052416-45052357	hs|19q13.31	Agilent_HUMAN_G3V2	ENST00000455455	ENST00000455455	chr19	 45052357	 45052416	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17589_PI429285431	0.9675184	A	0.97866946	A	0.992300468626374	0	lncRNA	19315-1_{1..542}	lnc-CDK17-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK17-4:1	chr12	 97651066	 97651607	-	lnc-CDK17-4	lnc-CDK17-4:1	XLOC_010166	linc-CDK17-3	NA	NA	NA	inter
CUST_45378_PI429285431	0.89734477	A	0.894805	A	1.00176198488914	0	lncRNA	49812-1_{1..2194}	"gi|210147403|ref|NR_024280.1| Homo sapiens uncharacterized LOC100129066 (UNQ6494), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|210147403|ref|NR_024280.1| Homo sapiens uncharacterized LOC100129066 (UNQ6494), non-coding RNA"	Chr9	 92254698	 92256891	+	100129066	NR_024280.1	NA	NA	NA	NA	NA	inter
CUST_14106_PI429285431	0.89854735	A	0.8946143	A	1.00272990193323	0	lncRNA	15753-1_{1..637}	lnc-TGFBRAP1-6:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGFBRAP1-6:5	chr2	105467770	105468406	-	lnc-TGFBRAP1-6	lnc-TGFBRAP1-6:5	XLOC_002241	linc-MFSD9-15	POU3F3	NA	chr2:105471969-105473471	inter
CUST_13384_PI429285431	6.324268	P	5.761655	P	1.47694182381006	0	lncRNA	15019-1_{1..1480}	lnc-UQCRFS1-9:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UQCRFS1-9:14	chr19	 28284440	 28285919	-	lnc-UQCRFS1-9	lnc-UQCRFS1-9:14	XLOC_013282	linc-ZNF681-4	NA	NA	NA	inter
CUST_26196_PI429285431	0.91209936	A	0.9039642	A	1.00565479153172	0	lncRNA	27707-1_{1..581}	lnc-CYP7B1-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYP7B1-6:3	chr8	 65152997	 65153577	-	lnc-CYP7B1-6	lnc-CYP7B1-6:3	ENSG00000253554.1	RP11-32K4.1	NA	NA	NA	inter
CUST_39582_PI429285431	0.9021062	A	0.89743775	A	1.00324116420567	0	lncRNA	40525-1_{1..2245}	n387571|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ihb.1||-1.2167400|-0.2458266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387571|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ihb.1||-1.2167400|-0.2458266	chr6	  1261702	  1263946	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005948	3.1472104	P	3.8260486	P	0.624668116185792	0	lncRNA	TCONS_00015349	NA	NA	NA	NA	XLOC_006916	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006916), lincRNA [TCONS_00015349]"	chr8:125955072-125955131	hs|8q24.13	Agilent_HUMAN_G3V2	TCONS_00015349	TCONS_00015349	chr8	125955072	125955131	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26421_PI429285431	0.916229	A	0.9087669	A	1.00518573318582	0	lncRNA	27928-1_{1..1911}	lnc-TNPO3-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNPO3-1:8	chr7	128520673	128522583	-	lnc-TNPO3-1	lnc-TNPO3-1:8	ENSG00000135253.8	KCP	KCP	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-62.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.70;hg19_refFlat_ATP6V1F:range=chr7:128502959-1285056325'pad=0,hg19_refFlat_ATP6V1F:range=chr7:128502959-1285056325'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80chr7:128516919-128530977"	NA	inner
CUST_42186_PI429285431	9.512606	P	9.953148	P	0.736857729674136	0	lncRNA	44248-1_{1..88}	ENST00000408566 ncrna:miRNA chromosome:GRCh37:18:19263471:19263558:1 gene:ENSG00000221493 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408566 ncrna:miRNA chromosome:GRCh37:18:19263471:19263558:1 gene:ENSG00000221493 gene_biotype:miRNA transcript_biotype:miRNA	chr18	 19263471	 19263558	+	ENSG00000221493	ENST00000408566	NA	NA	ABHD3	NA	chr18:19253471-19273558	inner
CUST_28713_PI429285431	0.9005341	A	0.9010831	A	0.999619534593199	0	lncRNA	30413-1_{1..536}	n326103|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046501|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046501|-1.3524900|-0.4461150	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326103|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046501|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046501|-1.3524900|-0.4461150	chr10	  3866141	  3866676	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48330_PI429285431	1.0969831	A	1.7965888	A	0.61574047043292	0	lncRNA	52186-1_{1..757}	hg19_lincRNAsTranscripts_TCONS_l2_00000263 range=chr1:46905730-46906874 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000263 range=chr1:46905730-46906874 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 46905730	 46906486	+	NA	NA	NA	NA	LOC729041	NA	chr1:46903225-46911374	inter
CUST_14920_PI429285431	8.90809	P	8.72596	P	1.1345577143425	0	lncRNA	16582-1_{1..1187}	lnc-FUT8-2:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FUT8-2:14	chr14	 66594473	 66595659	+	lnc-FUT8-2	lnc-FUT8-2:14	XLOC_010856	linc-GPHN-2	NA	NA	NA	inter
CUST_35409_PI429285431	3.0957217	P	2.7960236	A	1.23088680962326	0	lncRNA	36820-1_{1..1511}	n342470|BC023258|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4964|NULL|-0.8045420|-0.1450517	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342470|BC023258|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4964|NULL|-0.8045420|-0.1450517	chr16	 29267364	 29268874	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29567_PI429285431	0.9000764	A	1.1485026	A	0.841814228677114	0	lncRNA	31327-1_{1..424}	n333064|AF258679|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075245|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075245|1.4433000|-0.1445899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333064|AF258679|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075245|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075245|1.4433000|-0.1445899	chr11	   624213	   624636	-	NA	NA	NA	NA	CDHR5	NA	chr11:616565-625067	inner
LNCA_21_P0006181	2.8165092	A	2.0745203	A	1.67247993182891	0	lncRNA	TCONS_00016074	NA	NA	NA	NA	XLOC_007463	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007463), lincRNA [TCONS_00016074]"	chr9:95559496-95559555	hs|9q22.31	Agilent_HUMAN_G3V2	TCONS_00016074	TCONS_00016074	chr9	 95559496	 95559555	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10466_PI429285431	10.096934	P	10.371466	P	0.826718456242201	0	lncRNA	11992-1_{1..649}	lnc-KCNJ4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNJ4-1:2	chr22	 38815793	 38816441	-	lnc-KCNJ4-1	lnc-KCNJ4-1:2	XLOC_014372	linc-CSNK1E	KCNJ4	NA	chr22:38822332-38825963	inter
CUST_3035_PI429285431	2.3746996	A	2.6118574	A	0.848415098153683	0	lncRNA	3014-1_{1..550}	"transcript_id ""ENST00000519605.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519605.1"" | genecode_v17"	chr8	 20811523	 20812072	+	ENSG00000254026.1	ENST00000519605.1	RP11-369E15.2	RP11-369E15.2-001	NA	NA	NA	inter
CUST_5459_PI429285431	3.1590395	P	2.632859	A	1.4401114840072	0	lncRNA	5393-1_{1..372}	"transcript_id ""ENST00000565266.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565266.1"" | genecode_v17"	chr16	 23683453	 23683824	+	ENSG00000259806.2	ENST00000565266.1	CTD-2196E14.4	CTD-2196E14.4-002	PLK1	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.51;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70chr16:23690201-23696820"	NA	inner
LNCA_21_P0006971	1.0469577	A	0.9208115	A	1.09137446928577	0	lncRNA	TCONS_00018438	NA	NA	NA	NA	XLOC_008730	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008730), lincRNA [TCONS_00018438]"	chr10:10828618-10826877	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018438	TCONS_00018438	chr10	 10826877	 10828618	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014800	0.9161425	A	1.6949567	A	0.582845657029616	0	lncRNA	XR_132604	XR_132604	XR_132604	NA	Hs.715074	LOC100507419	uncharacterized LOC100507419	NA	THC2683505	NA	"PREDICTED: Homo sapiens hypothetical LOC100507419 (LOC100507419), miscRNA [XR_132604]"	chr16:3105763-3105001	hs|16p13.3	Agilent_HUMAN_G3V2	XR_132604	XR_132604	chr16	  3105001	  3105763	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24836_PI429285431	2.123633	A	2.0076745	A	1.08369479325681	0	lncRNA	26376-1_{1..777}	lnc-ADAM22-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAM22-2:1	chr7	 87860615	 87861391	+	lnc-ADAM22-2	lnc-ADAM22-2:1	ENSG00000228747.2	AC005075.5	SRI	NA	chr7:87850615-87856308	inter
CUST_283_PI429285431	0.89852667	A	0.90191364	A	0.997655084912753	0	lncRNA	274-1_{1..358}	"transcript_id ""ENST00000415686.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415686.1"" | genecode_v17"	chr1	 73771917	 73772274	+	ENSG00000233973.1	ENST00000415686.1	RP4-598G3.1	RP4-598G3.1-005	NA	NA	NA	inter
CUST_19136_PI429285431	1.8214426	A	1.1991376	A	1.53933261590282	0	lncRNA	20813-4_{9001..12000}	lnc-MYB-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYB-6:1	NA	     9000	    11999	NA	NA	NA	NA	NA	NA	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00"	NA	Unknown
CUST_31704_PI429285431	0.9083058	A	0.91333055	A	0.996523166934943	0	lncRNA	33448-1_{1..3000}	n338234|BX538140|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|626|NULL|-0.7236480|-0.3513988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n338234|BX538140|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|626|NULL|-0.7236480|-0.3513988	chr14	 28081793	 28084792	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17396_PI429285431	1.9328234	A	1.6506249	A	1.21604658717695	0	lncRNA	19118-1_{1..285}	lnc-IQCK-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IQCK-1:2	chr16	 19940450	 19940734	+	lnc-IQCK-1	lnc-IQCK-1:2	XLOC_011660	linc-ACSM5-6	NA	NA	NA	inter
CUST_10496_PI429285431	1.5151154	A	0.90141517	A	1.53017878900102	0	lncRNA	12024-1_{1..455}	lnc-C5orf64-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf64-1:3	chr5	 61052978	 61053432	+	lnc-C5orf64-1	lnc-C5orf64-1:3	XLOC_004405	linc-KIF2A-2	NA	NA	NA	inter
CUST_44908_PI429285431	3.3290155	P	2.51115	A	1.76279596568972	0	lncRNA	49425-1_{1..2760}	"gi|54400743|ref|NR_002186.1| Homo sapiens uncharacterized protein DKFZp586I1420 (DKFZP586I1420), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|54400743|ref|NR_002186.1| Homo sapiens uncharacterized protein DKFZp586I1420 (DKFZP586I1420), non-coding RNA"	NA	NA	NA	NA	NA	NR_002186.1	NA	NA	NA	NA	NA	Unknown
CUST_34697_PI429285431	16.552856	P	16.505009	P	1.03372110274188	0	lncRNA	36147-1_{1..1671}	n341603|AK093407|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4074|NULL|-1.0081200|-0.2307940	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341603|AK093407|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4074|NULL|-1.0081200|-0.2307940	chr8	126625711	126627381	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11262_PI429285431	0.8980426	A	0.8980224	A	1.00001400167107	0	lncRNA	12821-1_{1..534}	lnc-AC233263.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC233263.1-1:1	chr2	 92179059	 92179592	-	lnc-AC233263.1-1	lnc-AC233263.1-1:1	XLOC_002204	linc-EIF2AK3-7	NA	NA	NA	inter
CUST_4247_PI429285431	2.373192	A	2.0850863	A	1.22103596939454	0	lncRNA	4204-1_{1..561}	"transcript_id ""ENST00000550720.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550720.1"" | genecode_v17"	chr12	 48225158	 48225718	+	ENSG00000257488.1	ENST00000550720.1	RP5-1057I20.2	RP5-1057I20.2-001	VDR	NA	chr12:48235320-48238319	inter
CUST_29752_PI429285431	1.8622901	A	1.7169604	A	1.10598337551431	0	lncRNA	31514-1_{1..553}	n333435|BC015985|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000088882|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000088882|1.3810400|-0.4568691	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333435|BC015985|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000088882|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000088882|1.3810400|-0.4568691	chr5	 42756927	 42757479	+	NA	NA	NA	NA	CCDC152	NA	chr5:42756920-42802539	inner
LNCA_21_P0013133	2.0804133	A	0.92389625	A	2.22918608039203	0	lncRNA	ENST00000435946	NA	AF086303	NA	Hs.384600	XLOC_l2_012605	NA	ENST00000435946	THC2651086	NA	"BROAD Institute lincRNA (XLOC_l2_012605), lincRNA [TCONS_l2_00024287]"	chr6:75400290-75400349	hs|6q13	Agilent_HUMAN_G3V2	ENST00000435946	ENST00000435946	chr6	 75400290	 75400349	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49179_PI429285431	8.514573	P	8.67501	P	0.89475400413019	0	lncRNA	53003-1_{1..990}	hg19_lincRNAsTranscripts_TCONS_l2_00021323 range=chr4:142242299-142253757 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021323 range=chr4:142242299-142253757 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	142242299	142243288	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40"	NA	inter
CUST_28838_PI429285431	7.07265	P	7.2110643	P	0.908517179308474	0	lncRNA	30546-1_{1..357}	n326252|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000089834|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000089834|-0.9788950|-0.3206468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326252|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000089834|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000089834|-0.9788950|-0.3206468	chr1	209879772	209880128	+	NA	NA	NA	NA	HSD11B1	NA	chr1:209869772-209904141	inner
LNCA_21_P0014253	7.399193	P	7.0819955	P	1.24590796442	0	lncRNA	XR_109024	XR_109024	XR_109024	NA	NA	LOC100505601	uncharacterized LOC100505601	NA	THC2711755	NA	"PREDICTED: Homo sapiens hypothetical LOC100505601 (LOC100505601), miscRNA [XR_109024]"	chr10:35105291-35105350	hs|10p11.21	Agilent_HUMAN_G3V2	XR_109024	XR_109024	chr10	 35105291	 35105350	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00322321	0.925854	A	0.9218856	A	1.00275447187719	0	lncRNA	THC2558187	NA	NA	NA	NA	XLOC_l2_013314	NA	NA	THC2558187	NA	"BROAD Institute lincRNA (XLOC_l2_013314), lincRNA [TCONS_l2_00027075]"	chr7:026480066-026480125	hs|7p15.2	Agilent_HUMAN_G3V2	THC2558187	THC2558187	chr7	 26480066	 26480125	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29512_PI429285431	5.443713	P	5.521135	P	0.947749700105771	0	lncRNA	31270-1_{1..535}	n332946|AF088057|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067605|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067605|-1.1710600|-0.2324388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332946|AF088057|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067605|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067605|-1.1710600|-0.2324388	chr8	144298518	144299052	+	NA	NA	NA	NA	GPIHBP1	NA	chr8:144295068-144299044	inner
CUST_46954_PI429285431	8.026524	P	7.79297	P	1.17572772535151	0	lncRNA	51059-1_{1..859}	"gi|223671897|ref|NR_026872.1| Homo sapiens phosphodiesterase 6G, cGMP-specific, rod, gamma (PDE6G), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223671897|ref|NR_026872.1| Homo sapiens phosphodiesterase 6G, cGMP-specific, rod, gamma (PDE6G), transcript variant 2, non-coding RNA"	Chr17	 79617489	 79618347	-	5148	NR_026872.1	NA	NA	NA	NA	NA	inter
CUST_36609_PI429285431	2.511286	A	1.6333083	A	1.83779735957005	0	lncRNA	37802-1_{1..1189}	n345105|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_654|NULL|-1.4962500|-0.3575254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345105|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_654|NULL|-1.4962500|-0.3575254	chr10	  1095955	  1097143	-	NA	NA	NA	NA	WDR37	NA	chr10:1102776-1110616	inter
CUST_1678_PI429285431	0.89809716	A	0.9024687	A	0.9969744655564	0	lncRNA	1662-1_{1..594}	"transcript_id ""ENST00000602543.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602543.1"" | genecode_v17"	chr4	  3546615	  3547208	+	ENSG00000270090.1	ENST00000602543.1	RP11-529E10.7	RP11-529E10.7-001	NA	"hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20"	NA	inter
CUST_15921_PI429285431	0.91253513	A	0.91015995	A	1.0016477052974	0	lncRNA	17616-1_{1..585}	lnc-SLC2A13-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC2A13-2:1	chr12	 40617461	 40618045	-	lnc-SLC2A13-2	lnc-SLC2A13-2:1	XLOC_010053	linc-SLC2A13-5	LRRK2	NA	chr12:40618813-40627605	inter
CUST_16631_PI429285431	0.900455	A	0.90118754	A	0.999492370851649	0	lncRNA	18333-1_{1..494}	lnc-SIX3-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIX3-3:2	chr2	 45402279	 45402772	+	lnc-SIX3-3	lnc-SIX3-3:2	XLOC_001453	linc-PRKCE-2	NA	NA	NA	inter
CUST_19233_PI429285431	3.948071	P	3.7665486	P	1.1340799889019	0	lncRNA	20903-1_{1..3000}	lnc-XPC-5:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XPC-5:7	chr3	 14554285	 14557284	-	lnc-XPC-5	lnc-XPC-5:7	ENSG00000144596.7	GRIP2	GRIP2	NA	chr3:14544285-14564366	inner
CUST_15962_PI429285431	8.686033	P	8.61367	P	1.05143743053112	0	lncRNA	17660-1_{1..2757}	lnc-C5orf39-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf39-2:1	chr5	 42990941	 42993697	-	lnc-C5orf39-2	lnc-C5orf39-2:1	XLOC_004803	linc-SEPP1-3	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50"	NA	inter
CUST_6452_PI429285431	4.829654	P	4.608321	P	1.16581025708643	0	lncRNA	6393-1_{1..647}	"transcript_id ""ENST00000590053.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590053.1"" | genecode_v17"	chr19	 32458005	 32458651	-	ENSG00000267489.1	ENST00000590053.1	CTC-360P9.4	CTC-360P9.4-001	NA	NA	NA	inter
CUST_46647_PI429285431	0.90096605	A	0.89709294	A	1.00268824213676	0	lncRNA	50820-1_{1..2259}	"gi|214831648|ref|NR_003276.2| Homo sapiens carboxylesterase 1 pseudogene 1 (CES1P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|214831648|ref|NR_003276.2| Homo sapiens carboxylesterase 1 pseudogene 1 (CES1P1), non-coding RNA"	Chr16	 55794511	 55796769	+	51716	NR_003276.2	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20"	NA	inter
CUST_45722_PI429285431	0.88852495	A	1.3680301	A	0.717223592298098	0	lncRNA	50085-5_{12001..15000}	"gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	Chr11	  2641558	  2644557	-	10984	NR_002728.3	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.02;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0,hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_33379_PI429285431	3.3283043	A	3.1107993	P	1.16272103438117	0	lncRNA	34958-1_{1..3000}	n340097|AK127074|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2554|NULL|-0.9747760|-0.2985742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340097|AK127074|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2554|NULL|-0.9747760|-0.2985742	chr10	 87286636	 87289635	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43886_PI429285431	1.4826044	A	0.9081034	A	1.48916230191891	0	lncRNA	48605-1_{1..2525}	"gi|397139964|ref|XR_159058.1| PREDICTED: Homo sapiens uncharacterized LOC100506191 (LOC100506191), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139964|ref|XR_159058.1| PREDICTED: Homo sapiens uncharacterized LOC100506191 (LOC100506191), misc_RNA"	NA	NA	NA	NA	NA	XR_159058.1	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	Unknown
CUST_44115_PI429285431	0.90178597	A	1.4986385	A	0.661194885410129	0	lncRNA	48781-1_{1..1374}	"gi|201860286|ref|NR_024132.1| Homo sapiens ghrelin/obestatin prepropeptide (GHRL), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|201860286|ref|NR_024132.1| Homo sapiens ghrelin/obestatin prepropeptide (GHRL), transcript variant 6, non-coding RNA"	Chr3	 10327434	 10328807	-	51738	NR_024132.1	NA	NA	NA	NA	NA	inter
CUST_20430_PI429285431	3.554053	P	4.0344205	P	0.716795010418288	0	lncRNA	22074-1_{1..275}	lnc-HSPA4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSPA4-4:1	chr5	132724165	132724439	+	lnc-HSPA4-4	lnc-HSPA4-4:1	ENSG00000250409.1	CTB-3M24.3	FSTL4	NA	chr5:132714165-132734241	inner
CUST_40711_PI429285431	0.88905615	A	1.3086351	A	0.747642791744827	0	lncRNA	41450-2_{3001..3690}	n410281|NR_037177_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_2||0.3014790|-0.3246731	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410281|NR_037177_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_2||0.3014790|-0.3246731	chr6	  4097054	  4097743	+	NA	NA	NA	NA	C6orf201	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60chr6:4084054-4113637"	NA	inner
CUST_36527_PI429285431	0.90278065	A	0.92061526	A	0.987714086115022	0	lncRNA	37727-1_{1..460}	n345029|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_578|NULL|-1.3578800|-0.2852054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345029|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_578|NULL|-1.3578800|-0.2852054	chr8	129965124	129965583	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008096	0.91563576	A	0.90450394	A	1.00774583460737	0	lncRNA	THC2672764	NA	NA	NA	NA	XLOC_010456	NA	NA	THC2672764	NA	"BROAD Institute lincRNA (XLOC_010456), lincRNA [TCONS_00021862]"	chr13:081876764-081876823	hs|13q31.1	Agilent_HUMAN_G3V2	THC2672764	THC2672764	chr13	 81876764	 81876823	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014753	10.052919	P	8.763753	P	2.44386738449468	0	lncRNA	XR_132491	XR_132491	XR_132491	NA	NA	DNAPTP3	histone demethylase UTY-like	NA	THC2507047	NA	"PREDICTED: Homo sapiens histone demethylase UTY-like (DNAPTP3), miscRNA [XR_132491]"	chr2:216226694-216226753	hs|2q35	Agilent_HUMAN_G3V2	XR_132491	XR_132491	chr2	216226694	216226753	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41757_PI429285431	0.91735125	A	0.899686	A	1.01231989048212	0	lncRNA	43305-1_{1..81}	ENST00000577262 ncrna:miRNA chromosome:GRCh37:12:87138845:87138925:-1 gene:ENSG00000264077 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577262 ncrna:miRNA chromosome:GRCh37:12:87138845:87138925:-1 gene:ENSG00000264077 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 87138845	 87138925	-	ENSG00000264077	ENST00000577262	NA	NA	MGAT4C	NA	chr12:87128845-87148925	inner
CUST_20999_PI429285431	0.91591775	A	0.9013313	A	1.01016184106231	0	lncRNA	22628-1_{1..1237}	lnc-CALM1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALM1-4:3	chr14	 91114716	 91115952	+	lnc-CALM1-4	lnc-CALM1-4:3	ENSG00000259163.1	RP11-1078H9.5	TTC7B	NA	chr14:91104716-91125238	inner
CUST_44552_PI429285431	4.0509276	P	3.7155063	P	1.26174581371793	0	lncRNA	49137-1_{1..3000}	"gi|259906428|ref|NR_028509.1| Homo sapiens prostate androgen-regulated transcript 1 (non-protein coding) (PART1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|259906428|ref|NR_028509.1| Homo sapiens prostate androgen-regulated transcript 1 (non-protein coding) (PART1), transcript variant 3, non-coding RNA"	Chr5	 59783759	 59786758	+	25859	NR_028509.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70"	NA	inter
CUST_29077_PI429285431	0.89880985	A	0.9064604	A	0.994711078693625	0	lncRNA	30808-1_{1..1331}	n326570|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026183|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026183|-0.9230130|-0.4560501	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326570|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026183|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026183|-0.9230130|-0.4560501	chr1	 73013541	 73014871	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1575_PI429285431	7.8382115	P	4.392668	P	10.8946164387444	0	lncRNA	1564-1_{1..2089}	"transcript_id ""ENST00000595265.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595265.1"" | genecode_v17"	chr3	179113877	179115965	-	ENSG00000269728.1	ENST00000595265.1	RP11-145M9.4	RP11-145M9.4-001	GNB4	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60chr3:179113876-179125965"	NA	inner
CUST_27821_PI429285431	3.5880914	P	3.3957458	P	1.14261993057406	0	lncRNA	29407-1_{1..415}	n325049|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078205|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078205|-0.8565430|-0.1965253	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325049|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078205|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078205|-0.8565430|-0.1965253	chr20	 19686791	 19687205	+	NA	NA	NA	NA	SLC24A3	NA	chr20:19676791-19703541	inner
CUST_20974_PI429285431	0.8922057	A	0.88849205	A	1.00257742188252	0	lncRNA	22604-1_{1..392}	lnc-FANCL-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FANCL-3:7	chr2	 59476624	 59477015	-	lnc-FANCL-3	lnc-FANCL-3:7	ENSG00000233891.3	AC007131.2	NA	NA	NA	inter
CUST_4410_PI429285431	5.13208	P	6.4544377	P	0.399880905903743	0	lncRNA	4360-1_{1..209}	"transcript_id ""ENST00000548846.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548846.1"" | genecode_v17"	chr12	111834639	111834847	+	ENSG00000257595.2	ENST00000548846.1	RP3-473L9.4	RP3-473L9.4-003	SH2B3	NA	chr12:111824639-111851111	inter
CUST_32908_PI429285431	0.91626847	A	1.4066958	A	0.711814225356242	0	lncRNA	34533-1_{1..2046}	n339580|BC033557|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2024|NULL|-1.0383400|-0.2498282	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n339580|BC033557|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2024|NULL|-1.0383400|-0.2498282	chr20	 10855980	 10858025	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12870_PI429285431	4.9917216	P	4.03094	P	1.94636407890966	0	lncRNA	14497-1_{1..2063}	lnc-SPIRE2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPIRE2-1:1	chr16	 89894073	 89896135	+	lnc-SPIRE2-1	lnc-SPIRE2-1:1	XLOC_011837	linc-SPIRE2	SPIRE2	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-55.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70chr16:89894907-89904373"	NA	inter
CUST_43706_PI429285431	1.0826993	A	1.3761948	A	0.815922765735111	0	lncRNA	48455-1_{1..3000}	"gi|323510632|ref|NR_024171.2| Homo sapiens Mdm4 p53 binding protein homolog (mouse) (MDM4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|323510632|ref|NR_024171.2| Homo sapiens Mdm4 p53 binding protein homolog (mouse) (MDM4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_024171.2	NA	NA	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20"	NA	Unknown
CUST_14422_PI429285431	1.2507441	A	0.89577264	A	1.27896028009706	0	lncRNA	16083-1_{1..490}	lnc-PIWIL4-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIWIL4-4:2	chr11	 94475087	 94475576	+	lnc-PIWIL4-4	lnc-PIWIL4-4:2	XLOC_009254	linc-AMOTL1-1	NA	NA	NA	inter
CUST_4615_PI429285431	1.4257053	A	1.2578074	A	1.1234203953894	0	lncRNA	4561-1_{1..2036}	"transcript_id ""ENST00000414562.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000414562.1"" | genecode_v17"	chr13	 45373639	 45375674	-	ENSG00000235097.1	ENST00000414562.1	LINC00330	LINC00330-001	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80"	NA	inter
CUST_34246_PI429285431	0.9174275	A	0.9055874	A	1.00824070111567	0	lncRNA	35751-2_{3001..6000}	n341102|BX649128|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3568|NULL|-1.1126900|-0.3616407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341102|BX649128|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3568|NULL|-1.1126900|-0.3616407	chr11	 94901709	 94904708	-	NA	NA	NA	NA	SESN3	NA	chr11:94906133-94915359	inner
CUST_35254_PI429285431	6.3961163	P	6.6018906	P	0.867073200713678	0	lncRNA	36654-2_{3001..3287}	n342257|U66047|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4747|NULL|-0.6219030|-0.1892374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342257|U66047|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4747|NULL|-0.6219030|-0.1892374	chrX	149109845	149110131	-	NA	NA	NA	NA	CXorf40B	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60chrX:149100415-149106716"	NA	inter
CUST_3143_PI429285431	3.7303004	P	4.0444493	P	0.804325352547721	0	lncRNA	3122-1_{1..506}	"transcript_id ""ENST00000520097.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520097.1"" | genecode_v17"	chr8	 62747507	 62748012	+	ENSG00000254119.1	ENST00000520097.1	RP11-705O24.1	RP11-705O24.1-006	NA	NA	NA	inter
CUST_5798_PI429285431	0.90342546	A	0.9046274	A	0.99916722562701	0	lncRNA	5721-1_{1..776}	"transcript_id ""ENST00000578466.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578466.1"" | genecode_v17"	chr17	 26583464	 26584239	+	ENSG00000264486.1	ENST00000578466.1	CTD-2008P7.3	CTD-2008P7.3-001	NA	NA	NA	inter
CUST_22529_PI429285431	2.457292	A	1.8821772	A	1.48979600638529	0	lncRNA	24117-1_{1..583}	lnc-SLC29A4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC29A4-1:1	chr7	  5459967	  5460549	+	lnc-SLC29A4-1	lnc-SLC29A4-1:1	ENSG00000241269.1	AC093620.5	TNRC18	NA	chr7:5449967-5463177	inner
CUST_41840_PI429285431	1.1918157	A	1.8057424	A	0.653415824650802	0	lncRNA	43466-1_{1..108}	ENST00000390127 ncrna:miRNA chromosome:GRCh37:4:130242:130349:1 gene:ENSG00000211553 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390127 ncrna:miRNA chromosome:GRCh37:4:130242:130349:1 gene:ENSG00000211553 gene_biotype:miRNA transcript_biotype:miRNA	chr4	   130242	   130349	+	ENSG00000211553	ENST00000390127	NA	NA	ZNF718	NA	chr4:124420-140349	inner
CUST_18394_PI429285431	5.2038856	P	4.9624887	P	1.18213671997324	0	lncRNA	20119-1_{1..562}	lnc-PLCD1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLCD1-1:4	chr3	 37903192	 37903753	-	lnc-PLCD1-1	lnc-PLCD1-1:4	ENSG00000235257	AC093415.2	CTDSPL	NA	chr3:37903669-37913239	inter
CUST_13876_PI429285431	1.238417	A	1.1926258	A	1.0322491281521	0	lncRNA	15521-1_{1..1499}	lnc-FRG1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRG1-4:2	chr4	190497624	190499122	+	lnc-FRG1-4	lnc-FRG1-4:2	XLOC_003840	linc-FRG1-4	NA	NA	NA	inter
CUST_25019_PI429285431	1.2685653	A	1.431931	A	0.892939477860144	0	lncRNA	26559-1_{1..1068}	lnc-TRAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TRAP1-1:1	chr16	  3700637	  3701704	-	lnc-TRAP1-1	lnc-TRAP1-1:1	ENSG00000263235.1	RP11-461A8.4	TRAP1	NA	chr16:3708038-3711704	inter
CUST_20505_PI429285431	0.89983	A	0.8995652	A	1.0001835622189	0	lncRNA	22147-1_{1..543}	lnc-ZDHHC17-6:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZDHHC17-6:5	chr12	 76696542	 76697084	+	lnc-ZDHHC17-6	lnc-ZDHHC17-6:5	ENSG00000257219.1	RP11-54A9.1	NA	NA	NA	inter
CUST_40679_PI429285431	2.588792	A	2.9161396	A	0.797000425748633	0	lncRNA	41414-1_{1..599}	n410236|NR_037171_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037171_5||-0.5520400|-0.2631908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410236|NR_037171_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037171_5||-0.5520400|-0.2631908	chr6	  3463422	  3464020	-	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-23.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70chr6:3453422-3456793"	NA	inter
CUST_14347_PI429285431	0.89802086	A	0.89521754	A	1.00194500242232	0	lncRNA	16005-1_{1..343}	lnc-SLC2A13-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC2A13-3:2	chr12	 40834873	 40835215	-	lnc-SLC2A13-3	lnc-SLC2A13-3:2	XLOC_010054	linc-SLC2A13-1	LOC100652946	NA	chr12:40824873-40844900	inter
CUST_43799_PI429285431	2.0443733	A	2.0669656	A	0.984462187907981	0	lncRNA	48528-1_{1..3000}	"gi|109638755|ref|NR_003093.1| Homo sapiens E2F transcription factor 6 (E2F6), transcript variant c, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|109638755|ref|NR_003093.1| Homo sapiens E2F transcription factor 6 (E2F6), transcript variant c, non-coding RNA"	NA	NA	NA	NA	NA	NR_003093.1	NA	NA	NA	NA	NA	Unknown
CUST_29109_PI429285431	0.901867	A	0.8966648	A	1.00361239930628	0	lncRNA	30842-1_{1..645}	n326607|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000022600|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000022600|-1.1304600|-0.2407584	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326607|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000022600|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000022600|-1.1304600|-0.2407584	chr1	 56062067	 56062711	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5033_PI429285431	4.4704685	P	4.7580357	P	0.819282440895549	0	lncRNA	4973-1_{1..569}	"transcript_id ""ENST00000555103.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555103.1"" | genecode_v17"	chr14	101540290	101540858	-	ENSG00000230805.2	ENST00000555103.1	AL132709.1	AL132709.1-003	NA	NA	NA	inter
CUST_34514_PI429285431	1.0898067	A	0.9018641	A	1.13913805383553	0	lncRNA	35978-1_{1..3000}	n341392|BC040995|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3861|NULL|-1.0159600|-0.3149056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341392|BC040995|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3861|NULL|-1.0159600|-0.3149056	chr8	  5363589	  5366588	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40578_PI429285431	3.6541343	A	2.7359972	A	1.88967365005315	0	lncRNA	41330-1_{1..3000}	n410023|NR_036460|lncRNA|Homosapiens||RefGeneNoncode|NR_036460||4.1589100|-0.2637355	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410023|NR_036460|lncRNA|Homosapiens||RefGeneNoncode|NR_036460||4.1589100|-0.2637355	chr16	 75632246	 75635245	-	NA	NA	NA	NA	ADAT1	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80chr16:75632247-75657221"	NA	inter
LNCA_21_P0009371	4.8645153	P	5.238751	P	0.771514031289345	0	lncRNA	TCONS_00025785	NA	NA	NA	NA	XLOC_012594	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012594), lincRNA [TCONS_00025785]"	chr17:80341397-80340991	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_00025785	TCONS_00025785	chr17	 80340991	 80341397	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7560_PI429285431	5.4307046	P	5.8068943	P	0.770469792608992	0	lncRNA	9196-1_{1..628}	lnc-RTN4IP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RTN4IP1-2:1	chr6	107235134	107235761	-	lnc-RTN4IP1-2	lnc-RTN4IP1-2:1	ENSG00000235142	RP1-60O19.1	NA	NA	NA	inter
CUST_37522_PI429285431	4.004645	P	4.7629333	P	0.591197346789951	0	lncRNA	38625-1_{1..1115}	n345995|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1544|NULL|-1.3884000|-0.1669082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345995|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1544|NULL|-1.3884000|-0.1669082	chr11	  3520420	  3521534	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24199_PI429285431	0.92613804	A	1.2944468	A	0.774690117040639	0	lncRNA	25750-1_{1..645}	lnc-TBC1D12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBC1D12-1:1	chr10	 96370558	 96371202	+	lnc-TBC1D12-1	lnc-TBC1D12-1:1	ENSG00000244332.1	RP11-119K6.6	HELLS	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr10:96360558-96361856"	NA	inter
CUST_9079_PI429285431	4.553074	P	4.6966944	P	0.905244618309721	0	lncRNA	10601-2_{3001..3243}	lnc-THTPA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-THTPA-1:1	chr14	 24039898	 24040140	+	lnc-THTPA-1	lnc-THTPA-1:1	ENSG00000246609	ENSG00000258727.1	AP1G2	"hg19_refFlat_AP1G2:range=chr14:24028958-240365235'pad=0,hg19_refFlat_AP1G2:range=chr14:24028958-240365235'pad=0 3'pad=0 strand=- repeatMasking=none,-101.10chr14:24028777-24037279"	NA	inner
CUST_13624_PI429285431	0.9216989	A	1.2989377	A	0.769909725500062	0	lncRNA	15264-1_{1..725}	lnc-VSTM2B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-VSTM2B-2:1	chr19	 29939099	 29939823	+	lnc-VSTM2B-2	lnc-VSTM2B-2:1	XLOC_013031	linc-VSTM2B-2	NA	NA	NA	inter
CUST_6534_PI429285431	1.6958328	A	1.0303537	A	1.58609490697635	0	lncRNA	6477-1_{1..759}	"transcript_id ""ENST00000591684.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591684.1"" | genecode_v17"	chr19	 44978645	 44979403	-	ENSG00000267242.1	ENST00000591684.1	AC069278.4	AC069278.4-001	ZNF180	NA	chr19:44979856-44989403	inter
CUST_18054_PI429285431	0.9171814	A	0.94907296	A	0.978136992234188	0	lncRNA	19789-1_{1..346}	lnc-PTBP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTBP2-1:2	chr1	 96989576	 96989921	+	lnc-PTBP2-1	lnc-PTBP2-1:2	XLOC_000313	linc-PTBP2-1	NA	NA	NA	inter
CUST_15289_PI429285431	3.302791	A	4.123926	P	0.565996485530054	0	lncRNA	16966-1_{1..750}	lnc-RP11-50B3.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-50B3.2.1-2:1	chr11	125978832	125979581	+	lnc-RP11-50B3.2.1-2	lnc-RP11-50B3.2.1-2:1	XLOC_009320	linc-FAM118B	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-29.90"	NA	inter
CUST_9175_PI429285431	0.91545784	A	0.9181485	A	0.998136714682597	0	lncRNA	10692-1_{1..342}	lnc-DAD1-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DAD1-2:7	chr14	 22851467	 22851808	-	lnc-DAD1-2	lnc-DAD1-2:7	ENSG00000251002	AE000661.37	NA	NA	NA	inter
LNCA_33_P3282733	2.0299141	A	1.8079966	A	1.16628267442384	0	lncRNA	XR_110093	XR_110093	XR_110093	100131395	Hs.689507	LOC100131395	uncharacterized LOC100131395	NA	THC2618371	NA	"PREDICTED: Homo sapiens hypothetical LOC100131395 (LOC100131395), miscRNA [XR_110093]"	chr8:1885648-1885589	hs|8p23.3	Agilent_HUMAN_G3V2	XR_110093	XR_110093	chr8	  1885589	  1885648	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46562_PI429285431	1.0178434	A	1.393509	A	0.770749738517339	0	lncRNA	50746-1_{1..1766}	"gi|310123404|ref|XR_109230.1| PREDICTED: Homo sapiens uncharacterized LOC440313 (LOC440313), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123404|ref|XR_109230.1| PREDICTED: Homo sapiens uncharacterized LOC440313 (LOC440313), misc_RNA"	Chr15	101323681	101325446	-	440313	XR_109230.2	NA	NA	NA	NA	NA	inter
CUST_49826_PI429285431	3.948501	P	4.4088	P	0.726835605638016	0	lncRNA	53584-1_{1..551}	hg19_lincRNAsTranscripts_TCONS_l2_00025961 range=chr7:64630591-64645850 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025961 range=chr7:64630591-64645850 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 64630591	 64631141	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37755_PI429285431	0.9300526	A	0.93077177	A	0.999501633567982	0	lncRNA	38851-1_{1..2936}	n346262|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1812|NULL|-1.3274400|-0.2798292	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346262|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1812|NULL|-1.3274400|-0.2798292	chr6	  6493143	  6496078	-	NA	NA	NA	NA	LY86	NA	chr6:6534930-6597623	inter
CUST_42993_PI429285431	3.8970368	P	3.8972461	P	0.99985493481808	0	lncRNA	46152-1_{1..131}	ENST00000364172 ncrna:snoRNA chromosome:GRCh37:12:119326239:119326369:-1 gene:ENSG00000201042 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364172 ncrna:snoRNA chromosome:GRCh37:12:119326239:119326369:-1 gene:ENSG00000201042 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	119326239	119326369	-	ENSG00000201042	ENST00000364172	NA	NA	NA	NA	NA	inter
CUST_28700_PI429285431	0.906332	A	0.9039353	A	1.0016626465142	0	lncRNA	30400-1_{1..477}	n326089|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046539|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046539|-1.1083300|-0.3536678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326089|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046539|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046539|-1.1083300|-0.3536678	chr10	  5266320	  5266796	+	NA	NA	NA	NA	AKR1C4	NA	chr10:5256320-5260910	inter
CUST_15783_PI429285431	4.463294	P	4.862514	P	0.758268133758233	0	lncRNA	17473-1_{1..2317}	lnc-ABI3-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABI3-2:5	chr17	 47332053	 47334369	+	lnc-ABI3-2	lnc-ABI3-2:5	XLOC_012230	linc-NGFR-3	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-26.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.11;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30"	NA	inter
CUST_22629_PI429285431	0.92229	A	0.9200026	A	1.00158676243819	0	lncRNA	24215-1_{1..533}	lnc-KLF7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLF7-1:1	chr2	208394436	208394968	-	lnc-KLF7-1	lnc-KLF7-1:1	ENSG00000223725.1	AC007879.5	CREB1	NA	chr2:208394616-208404519	inter
CUST_4450_PI429285431	5.6658163	P	6.011916	P	0.786708076617786	0	lncRNA	4400-1_{1..630}	"transcript_id ""ENST00000538335.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000538335.1"" | genecode_v17"	chr12	122237755	122238384	-	ENSG00000212694.4	ENST00000538335.1	AC084018.1	AC084018.1-004	SETD1B	NA	chr12:122242638-122251812	inter
CUST_21537_PI429285431	1.528845	A	2.0696437	A	0.687390253019571	0	lncRNA	23155-1_{1..482}	lnc-NMNAT3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NMNAT3-4:1	chr3	140181564	140182045	-	lnc-NMNAT3-4	lnc-NMNAT3-4:1	ENSG00000251058.1	RP11-68L1.1	CLSTN2	NA	chr3:140171564-140191667	inner
CUST_51035_PI429285431	3.3733473	P	2.66279	A	1.63643613546261	0	lncRNA	54677-1_{1..214}	hg19_lincRNAsTranscripts_TCONS_l2_00006699 range=chr13:19940817-19941261 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006699 range=chr13:19940817-19941261 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 19940817	 19941030	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29457_PI429285431	5.555848	P	5.4516354	P	1.07490756288535	0	lncRNA	31215-1_{1..269}	n332861|AF081275|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066468_02|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066468_02|-0.8340920|-0.3326048	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332861|AF081275|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066468_02|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066468_02|-0.8340920|-0.3326048	chr6	  2670919	  2671187	-	NA	NA	NA	NA	MYLK4	NA	chr6:2663863-2681188	inner
CUST_26482_PI429285431	1.3760478	A	0.93295676	A	1.35951403013549	0	lncRNA	27990-1_{1..537}	lnc-FBXL5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXL5-2:2	chr4	 15229472	 15230008	-	lnc-FBXL5-2	lnc-FBXL5-2:2	ENSG00000249252.1	RP11-665G4.1	NA	"hg19_refFlat_CPEB2:range=chr4:15004298-150680045'pad=0,hg19_refFlat_CPEB2:range=chr4:15004298-150680045'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20"	NA	inter
CUST_47925_PI429285431	4.004278	P	3.265337	P	1.66895030805134	0	lncRNA	51816-1_{1..2805}	"gi|410172259|ref|XR_171688.1| PREDICTED: Homo sapiens integrator complex subunit 4-like 1 (INTS4L1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172259|ref|XR_171688.1| PREDICTED: Homo sapiens integrator complex subunit 4-like 1 (INTS4L1), misc_RNA"	NA	NA	NA	NA	NA	XR_171688.1	NA	NA	NA	NA	NA	Unknown
CUST_50326_PI429285431	0.91158605	A	1.1367881	A	0.855475207657904	0	lncRNA	54044-1_{1..631}	hg19_lincRNAsTranscripts_TCONS_l2_00029050 range=chr9:132044730-132048048 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029050 range=chr9:132044730-132048048 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132044730	132045360	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_344_PI429285431	0.9272458	A	1.1257432	A	0.871457734027551	0	lncRNA	337-1_{1..663}	"transcript_id ""ENST00000597752.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597752.1"" | genecode_v17"	chr1	106132319	106132981	-	ENSG00000230768.2	ENST00000597752.1	RP11-251P6.1	RP11-251P6.1-006	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_42619_PI429285431	3.1779177	P	3.298445	P	0.91985138670697	0	lncRNA	45484-1_{1..77}	ENST00000458974 ncrna:snoRNA chromosome:GRCh37:14:101364257:101364333:1 gene:ENSG00000238527 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000458974 ncrna:snoRNA chromosome:GRCh37:14:101364257:101364333:1 gene:ENSG00000238527 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101364257	101364333	+	ENSG00000238527	ENST00000458974	NA	NA	NA	NA	NA	inter
CUST_17334_PI429285431	1.759124	A	1.1079905	A	1.57040154796448	0	lncRNA	19052-1_{1..395}	lnc-NLGN1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NLGN1-1:7	chr3	174455431	174455825	+	lnc-NLGN1-1	lnc-NLGN1-1:7	XLOC_002925	linc-NAALADL2	NA	NA	NA	inter
CUST_44_PI429285431	2.6651478	A	2.4704864	A	1.14445552578111	0	lncRNA	43-1_{1..593}	"transcript_id ""ENST00000525429.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000525429.1"" | genecode_v17"	chr11	125002743	125003335	-	ENSG00000255475.1	ENST00000525429.1	RP11-687M24.4	RP11-687M24.4-001	NA	NA	NA	inter
CUST_14354_PI429285431	2.2997744	A	2.0100145	A	1.22243681715728	0	lncRNA	16012-1_{1..446}	lnc-RETNLB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RETNLB-2:1	chr3	108447680	108448125	-	lnc-RETNLB-2	lnc-RETNLB-2:1	XLOC_003210	linc-KIAA1524-1	NA	NA	NA	inter
CUST_47536_PI429285431	3.534517	P	4.1571703	P	0.649475360717201	0	lncRNA	51546-1_{1..1532}	"gi|193211422|ref|NR_024009.1| Homo sapiens uncharacterized LOC150384 (CN5H6.4), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|193211422|ref|NR_024009.1| Homo sapiens uncharacterized LOC150384 (CN5H6.4), non-coding RNA"	Chr22	 46691040	 46692571	-	150384	NR_024009.1	NA	NA	NA	NA	NA	inter
CUST_48131_PI429285431	6.56944	P	5.12792	P	2.71606875376028	0	lncRNA	51999-1_{1..342}	"gi|397137290|ref|XR_159204.1| PREDICTED: Homo sapiens uncharacterized LOC100996875 (LOC100996875), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397137290|ref|XR_159204.1| PREDICTED: Homo sapiens uncharacterized LOC100996875 (LOC100996875), misc_RNA"	NA	NA	NA	NA	NA	XR_159204.1	NA	NA	NA	NA	NA	Unknown
CUST_38012_PI429285431	1.23423	A	1.1106435	A	1.08943981618725	0	lncRNA	39097-1_{1..1179}	n377585|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029950||-0.6205220|-0.1511140	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377585|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029950||-0.6205220|-0.1511140	chr6	  2948659	  2949837	+	NA	NA	NA	NA	SERPINB6	"hg19_refFlat_SERPINB6:range=chr6:2948532-29710385'pad=0,hg19_refFlat_SERPINB6:range=chr6:2948532-29710385'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_SERPINB6:range=chr6:2948532-29595665'pad=0,hg19_refFlat_SERPINB6:range=chr6:2948532-29595665'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_SERPINB6:range=chr6:2948532-29690145'pad=0,hg19_refFlat_SERPINB6:range=chr6:2948532-29690145'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_SERPINB6:range=chr6:2948532-29713825'pad=0,hg19_refFlat_SERPINB6:range=chr6:2948532-29713825'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50chr6:2948393-2959838"	NA	inner
LNCA_21_P0008004	5.382013	P	5.791024	P	0.753139490893353	0	lncRNA	ENST00000435156	NA	NA	NA	NA	XLOC_010663	NA	ENST00000435156	NA	NA	"BROAD Institute lincRNA (XLOC_010663), lincRNA [TCONS_00021673]"	chr13:78849914-78849855	hs|13q22.3	Agilent_HUMAN_G3V2	ENST00000435156	ENST00000435156	chr13	 78849855	 78849914	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18045_PI429285431	5.393838	P	4.6884284	P	1.63060754991275	0	lncRNA	19781-1_{1..1891}	lnc-EXOSC6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-EXOSC6-1:1	chr16	 70258759	 70260649	-	lnc-EXOSC6-1	lnc-EXOSC6-1:1	XLOC_011997	linc-NOB1	LOC100506060	NA	chr16:70263707-70269266	inter
CUST_22403_PI429285431	0.91664094	A	0.91551286	A	1.00078223125486	0	lncRNA	23992-2_{3001..3897}	lnc-TOR3A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TOR3A-1:1	chr1	179074526	179075422	+	lnc-TOR3A-1	lnc-TOR3A-1:1	ENSG00000228449.1	RP11-177A2.4	ABL2	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00chr1:179068462-179084885"	NA	inner
CUST_29514_PI429285431	1.6729616	A	1.2815326	A	1.31169200114719	0	lncRNA	31272-1_{1..679}	n332950|AF090425|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000068208|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000068208|2.2077900|-0.2393862	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332950|AF090425|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000068208|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000068208|2.2077900|-0.2393862	chr15	 52630007	 52630685	-	NA	NA	NA	NA	MYO5A	NA	chr15:52620007-52653678	inner
CUST_9848_PI429285431	2.8843527	A	2.9039345	A	0.986518629300277	0	lncRNA	11368-1_{1..243}	lnc-CCDC67-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC67-1:1	chr11	 92985098	 92985340	+	lnc-CCDC67-1	lnc-CCDC67-1:1	XLOC_009251	linc-CCDC67	NA	NA	NA	inter
CUST_37748_PI429285431	5.902039	P	6.131897	P	0.852718818107115	0	lncRNA	38842-1_{1..2929}	n346252|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1802|NULL|-1.2766900|-0.2398519	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n346252|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1802|NULL|-1.2766900|-0.2398519	chr1	234844614	234847542	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3917_PI429285431	0.957237	A	0.9708395	A	0.990615774741572	0	lncRNA	3887-1_{1..578}	"transcript_id ""ENST00000524493.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524493.1"" | genecode_v17"	chr11	 41416145	 41416722	+	ENSG00000255132.1	ENST00000524493.1	RP11-63C8.1	RP11-63C8.1-001	NA	NA	NA	inner
CUST_24888_PI429285431	3.4610224	P	4.0200915	P	0.678739979912246	0	lncRNA	26429-1_{1..468}	lnc-CCNB1IP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCNB1IP1-2:1	chr14	 20814724	 20815191	-	lnc-CCNB1IP1-2	lnc-CCNB1IP1-2:1	ENSG00000254846.1	RP11-203M5.2	PARP2	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60chr14:20811773-20825047"	NA	inner
CUST_50654_PI429285431	3.16822	P	3.1801195	P	0.991785817413009	0	lncRNA	54330-3_{6001..6070}	hg19_lincRNAsTranscripts_TCONS_l2_00002974 range=chr10:37591922-37600067 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002974 range=chr10:37591922-37600067 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 37597922	 37597991	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008649	0.9255246	A	0.920771	A	1.00330037873386	0	lncRNA	TCONS_00023449	NA	NA	NA	NA	XLOC_011294	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011294), lincRNA [TCONS_00023449]"	chr15:69857812-69857871	hs|15q23	Agilent_HUMAN_G3V2	TCONS_00023449	TCONS_00023449	chr15	 69857812	 69857871	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8727_PI429285431	0.9179851	A	0.926556	A	0.994076717053131	0	lncRNA	10270-1_{1..2538}	lnc-CD3D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CD3D-1:1	chr11	118183882	118186419	-	lnc-CD3D-1	lnc-CD3D-1:1	ENSG00000244817	ENST00000501549	CD3E	"hg19_refFlat_CD3E:range=chr11:118175668-1181862575'pad=0,hg19_refFlat_CD3E:range=chr11:118175668-1181862575'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.60chr11:118175295-118186890"	NA	inner
LNCA_19_P00315936	8.012166	P	8.1104555	P	0.934139877860131	0	lncRNA	TCONS_l2_00020134	NA	NA	NA	NA	XLOC_l2_010239	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010239), lincRNA [TCONS_l2_00020134]"	chr3:72283358-72283299	hs|3p13	Agilent_HUMAN_G3V2	TCONS_l2_00020134	TCONS_l2_00020134	chr3	 72283299	 72283358	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47723_PI429285431	1.3049012	A	1.7562306	A	0.731368603246639	0	lncRNA	51681-2_{3001..5816}	"gi|385137090|ref|NR_047628.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 58, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137090|ref|NR_047628.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 58, non-coding RNA"	ChrY	 15363259	 15366074	-	7404	NR_047628.1	NA	NA	NA	NA	NA	inter
CUST_2702_PI429285431	0.9186135	A	0.90458906	A	1.00976840345069	0	lncRNA	2688-1_{1..311}	"transcript_id ""ENST00000456118.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456118.1"" | genecode_v17"	chr6	165241239	165241549	+	ENSG00000227455.2	ENST00000456118.1	RP11-300M24.1	RP11-300M24.1-001	NA	NA	NA	inter
CUST_340_PI429201921	2.0211997	A	2.2345006	A	0.862561423081022	0	lncRNA	224-1_{1..3000}	TC05002826.hg.1	TCONS_l2_00023648-XLOC_l2_011921 // Broad TUCP // linc-IRX2-5 chr5:-:4033825-4041877 // chr5 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr5:-:4033825-4041877	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00023648-XLOC_l2_011921	linc-IRX2-5	chr5	  4033825	  4041877	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10260_PI429285431	2.882688	P	2.9514234	A	0.953473402704912	0	lncRNA	11787-1_{1..3000}	lnc-HPCAL1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HPCAL1-1:7	chr2	 10595549	 10598548	+	lnc-HPCAL1-1	lnc-HPCAL1-1:7	XLOC_001342	linc-ATP6V1C2-4	ODC1	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.74;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_EFCAB5:range=chr17:28270646-284007085'pad=0,hg19_refFlat_EFCAB5:range=chr17:28270646-284007085'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20chr2:10585549-10588453"	NA	inter
CUST_1039_PI429285431	2.7995114	A	3.377064	P	0.670099576287827	0	lncRNA	1029-1_{1..465}	"transcript_id ""ENST00000450325.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450325.1"" | genecode_v17"	chr2	114879851	114880315	-	ENSG00000235242.1	ENST00000450325.1	AC010982.2	AC010982.2-001	NA	NA	NA	inter
CUST_46401_PI429285431	0.90443665	A	0.9057608	A	0.99908259023875	0	lncRNA	50615-4_{9001..9701}	"gi|381140055|ref|NR_046473.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 16, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|381140055|ref|NR_046473.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 16, non-coding RNA"	Chr14	101301445	101302145	+	55384	NR_046473.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70"	NA	inter
CUST_8436_PI429285431	0.9023764	A	0.90094316	A	1.00099393989626	0	lncRNA	10006-1_{1..2209}	lnc-MAB21L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MAB21L2-1:1	chr4	151500756	151502964	+	lnc-MAB21L2-1	lnc-MAB21L2-1:1	ENSG00000249690	RP11-1336O20.2	LRBA	NA	chr4:151490756-151512697	inner
CUST_17071_PI429285431	0.9269729	A	0.9341943	A	0.995007013554698	0	lncRNA	18780-1_{1..912}	lnc-VGLL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VGLL3-1:1	chr3	 86959767	 86960678	-	lnc-VGLL3-1	lnc-VGLL3-1:1	XLOC_003177	linc-GBE1-1	NA	NA	NA	inter
CUST_51319_PI429285431	1.1811401	A	1.6247776	A	0.735278395338899	0	lncRNA	54923-2_{3001..5745}	hg19_lincRNAsTranscripts_TCONS_l2_00008613 range=chr15:42956889-42980135 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008613 range=chr15:42956889-42980135 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 42959889	 42962633	+	NA	NA	NA	NA	STARD9	NA	chr15:42946889-42990135	inner
CUST_16746_PI429285431	6.9910364	P	7.0594134	P	0.953710297757351	0	lncRNA	18453-1_{1..979}	lnc-RWDD3-7:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RWDD3-7:5	chr1	 96488089	 96489067	+	lnc-RWDD3-7	lnc-RWDD3-7:5	XLOC_000312	linc-PTBP2-2	NA	NA	NA	inter
CUST_8833_PI429285431	0.90314555	A	0.8979707	A	1.00359337342891	0	lncRNA	10374-1_{1..3000}	lnc-LRRFIP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRFIP2-1:1	chr3	 37405758	 37408757	-	lnc-LRRFIP2-1	lnc-LRRFIP2-1:1	ENSG00000246020	ENST00000498878	GOLGA4	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.91;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-12.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-16.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60chr3:37395758-37408370"	NA	inner
CUST_24361_PI429285431	6.5646405	P	6.7987895	P	0.850186349193405	0	lncRNA	25914-1_{1..386}	lnc-EXOC3L4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-EXOC3L4-1:1	chr14	103564955	103565340	+	lnc-EXOC3L4-1	lnc-EXOC3L4-1:1	ENSG00000259444.1	RP11-736N17.8	EXOC3L4	NA	chr14:103554955-103575222	inter
CUST_18252_PI429285431	4.4704275	P	4.4687347	P	1.00117404820289	0	lncRNA	19987-1_{1..1706}	lnc-RNF39-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-RNF39-4:2	chr6	 30028518	 30030223	-	lnc-RNF39-4	lnc-RNF39-4:2	ENSG00000204623	ZNRD1-AS1	ZNRD1	NA	chr6:30029036-30032686	inter
CUST_47434_PI429285431	0.90790087	A	0.91029453	A	0.998342216962635	0	lncRNA	51469-1_{1..2192}	"gi|310124508|ref|XR_109694.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 528 (LINC00528), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310124508|ref|XR_109694.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 528 (LINC00528), misc_RNA"	NA	NA	NA	NA	NA	XR_109694.1	NA	NA	NA	NA	NA	Unknown
CUST_4084_PI429285431	0.90824974	A	0.90030175	A	1.00552433000486	0	lncRNA	4046-1_{1..574}	"transcript_id ""ENST00000539305.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539305.1"" | genecode_v17"	chr11	115530376	115530949	+	ENSG00000256717.1	ENST00000539305.1	AP000797.3	AP000797.3-001	NA	NA	NA	inter
CUST_29470_PI429285431	5.5564866	P	3.290139	P	4.81103601716424	0	lncRNA	31228-1_{1..363}	n332887|AF086046|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066925|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066925|-1.2907100|-0.2469165	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332887|AF086046|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066925|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066925|-1.2907100|-0.2469165	chr12	123776574	123776936	-	NA	NA	NA	NA	SBNO1	NA	chr12:123773656-123786937	inner
CUST_10054_PI429285431	3.4782374	P	3.3107846	P	1.12307385140298	0	lncRNA	11580-1_{1..259}	lnc-SSTR4-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SSTR4-4:3	chr20	 22671103	 22671361	+	lnc-SSTR4-4	lnc-SSTR4-4:3	XLOC_013486	linc-SSTR4-3	NA	NA	NA	inter
CUST_51352_PI429285431	2.7647376	A	0.92079973	A	3.58988560007549	0	lncRNA	54948-2_{3001..4692}	hg19_lincRNAsTranscripts_TCONS_l2_00008763 range=chr15:78998357-79029199 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008763 range=chr15:78998357-79029199 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 79001357	 79003048	+	NA	NA	NA	NA	NA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30"	NA	inter
CUST_37234_PI429285431	0.90569013	A	1.4627237	A	0.679698304902908	0	lncRNA	38343-1_{1..1979}	n345666|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1215|NULL|-1.3315100|-0.3535874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345666|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1215|NULL|-1.3315100|-0.3535874	chr5	 10188214	 10190192	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25472_PI429285431	0.9139938	A	0.9033922	A	1.00737553540674	0	lncRNA	27002-1_{1..387}	lnc-TMEM206-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM206-3:1	chr1	212504800	212505186	-	lnc-TMEM206-3	lnc-TMEM206-3:1	ENSG00000234915.1	RP11-384C4.7	PPP2R5A	NA	chr1:212494800-212515055	inner
CUST_33560_PI429285431	0.89804673	A	0.8882434	A	1.00681828996734	0	lncRNA	35126-2_{3001..4986}	n340308|BX648790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2769|NULL|-0.0507015|-0.2925586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340308|BX648790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2769|NULL|-0.0507015|-0.2925586	chr5	  4523769	  4525754	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8325_PI429285431	2.8083494	A	2.785887	A	1.01569158929258	0	lncRNA	9908-1_{1..565}	lnc-PRKD1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PRKD1-3:4	chr14	 29847499	 29848063	-	lnc-PRKD1-3	lnc-PRKD1-3:4	ENSG00000257522	RP11-562L8.1	NA	NA	NA	inter
CUST_38033_PI429285431	2.2424726	A	2.216065	A	1.01847290500185	0	lncRNA	39116-1_{1..593}	n377606|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029980||-1.2089200|-0.3745270	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377606|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029980||-1.2089200|-0.3745270	chr6	  2523452	  2524044	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37763_PI429285431	0.9078849	A	0.8972478	A	1.00740032392441	0	lncRNA	38860-1_{1..777}	n346271|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1821|NULL|-1.3117200|-0.2724825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346271|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1821|NULL|-1.3117200|-0.2724825	chr8	 12338386	 12339162	+	NA	NA	NA	NA	LONRF1	"hg19_refFlat_RPS3A:range=chr4:152020805-1520257455'pad=0,hg19_refFlat_RPS3A:range=chr4:152020805-1520257455'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.50chr8:12485941-12492364"	NA	inter
CUST_29741_PI429285431	13.192167	P	13.28061	P	0.940537257846781	0	lncRNA	31503-1_{1..383}	n333416|BC011178|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087604|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087604|-0.6067660|-0.0873312	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333416|BC011178|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087604|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087604|-0.6067660|-0.0873312	chr17	 42396981	 42397363	-	NA	NA	NA	NA	SLC25A39	NA	chr17:42396993-42402217	inner
CUST_29188_PI429285431	1.0770464	A	0.89520675	A	1.13432940158297	0	lncRNA	30933-1_{1..384}	n326701|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021789|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021789|-0.1453790|-0.2076816	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326701|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021789|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021789|-0.1453790|-0.2076816	chr1	 13523017	 13523400	+	NA	NA	NA	NA	PRAMEF21	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.92;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90chr1:13521963-13526943"	NA	inner
LNCA_21_P0014556	0.910163	A	0.8983551	A	1.00821819810058	0	lncRNA	ENST00000555966	XR_110292	XR_110292	NA	Hs.569387	LOC100506549	NA	ENST00000555966	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506549 (LOC100506549), miscRNA [XR_110292]"	chr14:51290160-51290219	hs|14q22.1	Agilent_HUMAN_G3V2	ENST00000555966	ENST00000555966	chr14	 51290160	 51290219	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18411_PI429285431	6.1427693	P	4.661422	P	2.7920935880822	0	lncRNA	20136-1_{1..359}	lnc-RP3-377D14.1.1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RP3-377D14.1.1-3:4	chr1	143351308	143351666	+	lnc-RP3-377D14.1.1-3	lnc-RP3-377D14.1.1-3:4	ENSG00000242569	BX004987.3	NA	NA	NA	inter
CUST_4316_PI429285431	1.1048714	A	0.90638304	A	1.14749539182758	0	lncRNA	4271-1_{1..417}	"transcript_id ""ENST00000536112.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536112.1"" | genecode_v17"	chr12	 68825635	 68826051	-	ENSG00000251301.2	ENST00000536112.1	RP11-81H14.2	RP11-81H14.2-004	NA	NA	NA	inter
CUST_6086_PI429285431	2.021993	A	3.1169841	P	0.468139011662539	0	lncRNA	6011-1_{1..551}	"transcript_id ""ENST00000589566.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589566.1"" | genecode_v17"	chr18	 11490073	 11490623	+	ENSG00000267252.1	ENST00000589566.1	RP11-712C7.1	RP11-712C7.1-002	NA	NA	NA	inter
CUST_28540_PI429285431	0.9021211	A	0.89199233	A	1.00704543145884	0	lncRNA	30212-1_{1..528}	n325889|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050239|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050239|-1.2744000|-0.4126369	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325889|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050239|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050239|-1.2744000|-0.4126369	chr10	109126297	109126824	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47776_PI429285431	1.1077172	A	0.8961016	A	1.15798422508071	0	lncRNA	51705-1_{1..3000}	"gi|385137086|ref|NR_047624.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 54, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137086|ref|NR_047624.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 54, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047624.1	NA	NA	NA	NA	NA	inter
CUST_49510_PI429285431	1.3373395	A	1.0488653	A	1.2213478920194	0	lncRNA	53301-1_{1..1049}	hg19_lincRNAsTranscripts_TCONS_l2_00024672 range=chr6:26952087-26960688 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024672 range=chr6:26952087-26960688 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 26952087	 26953135	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30684_PI429285431	5.917916	P	6.1072054	P	0.877037600155196	0	lncRNA	32466-1_{1..340}	n336171|X92770|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324572|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324572|1.5392900|-0.1921214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336171|X92770|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324572|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324572|1.5392900|-0.1921214	chr14	 22337267	 22337606	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48553_PI429285431	0.90735286	A	0.89917	A	1.00568804216697	0	lncRNA	52401-2_{3001..4114}	hg19_lincRNAsTranscripts_TCONS_l2_00014889 range=chr2:130745749-130810383 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014889 range=chr2:130745749-130810383 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	130748749	130749862	-	NA	NA	NA	NA	RAB6C	NA	chr2:130737235-130740311	inter
CUST_26520_PI429285431	1.1018461	A	1.1124063	A	0.992706951436179	0	lncRNA	28027-1_{1..405}	lnc-TMEM159-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM159-2:1	chr16	 21141303	 21141707	+	lnc-TMEM159-2	lnc-TMEM159-2:1	ENSG00000263331.1	CTC-508F8.1	DNAH3	"hg19_refFlat_DNAH3:range=chr16:20944476-211707625'pad=0,hg19_refFlat_DNAH3:range=chr16:20944476-211707625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50chr16:21131303-21151429"	NA	inner
CUST_5105_PI429285431	0.8902511	A	0.88366586	A	1.00457497392297	0	lncRNA	5045-1_{1..433}	"transcript_id ""ENST00000565512.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565512.1"" | genecode_v17"	chr15	 24758217	 24758649	+	ENSG00000259905.1	ENST00000565512.1	PWRN1	PWRN1-011	NA	NA	NA	inter
CUST_12171_PI429285431	6.084971	P	6.316082	P	0.851978541888902	0	lncRNA	13770-1_{1..1376}	lnc-C9orf170-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf170-1:2	chr9	 89565782	 89567157	+	lnc-C9orf170-1	lnc-C9orf170-1:2	XLOC_007438	linc-C9orf170-1	GAS1	NA	chr9:89559277-89562104	inter
LNCA_21_P0014460	0.9153997	A	0.9037659	A	1.00809653677058	0	lncRNA	XR_109939	XR_109939	XR_109939	NA	NA	LOC100506891	uncharacterized LOC100506891	NA	THC2656958	NA	"PREDICTED: Homo sapiens hypothetical LOC100506891 (LOC100506891), miscRNA [XR_109939]"	chr2:60647258-60651456	hs|2p16.1	Agilent_HUMAN_G3V2	XR_109939	XR_109939	chr2	 60647258	 60651456	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7324_PI429285431	3.332514	P	3.8057346	P	0.720354717804979	0	lncRNA	8614-1_{1..102}	"transcript_id ""ENST00000516474.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516474.1"" | genecode_v17"	chr17	 26388993	 26389094	+	ENSG00000252283.1	ENST00000516474.1	Vault	Vault.2-201	NLK	NA	chr17:26378993-26399094	inner
CUST_34158_PI429285431	0.90964097	A	0.91442084	A	0.99669232902244	0	lncRNA	35676-1_{1..355}	n341002|AJ131610|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3468|NULL|-1.2108100|-0.3288861	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341002|AJ131610|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3468|NULL|-1.2108100|-0.3288861	chr11	 27777987	 27778341	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42825_PI429285431	2.7939544	A	4.055567	P	0.417077502704208	0	lncRNA	45839-1_{1..129}	ENST00000384028 ncrna:snoRNA chromosome:GRCh37:16:30721858:30721986:1 gene:ENSG00000206755 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384028 ncrna:snoRNA chromosome:GRCh37:16:30721858:30721986:1 gene:ENSG00000206755 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 30721858	 30721986	+	ENSG00000206755	ENST00000384028	NA	NA	SRCAP	NA	chr16:30711858-30731986	inner
CUST_17912_PI429285431	4.989336	P	4.8913355	P	1.07028906936048	0	lncRNA	19643-1_{1..1000}	lnc-BLID-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BLID-2:3	chr11	122238204	122239203	-	lnc-BLID-2	lnc-BLID-2:3	XLOC_009583	linc-BLID	NA	"hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70"	NA	inter
CUST_14694_PI429285431	2.684333	A	2.4483807	A	1.17768385104818	0	lncRNA	16360-4_{9001..12000}	lnc-NAP1L2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-NAP1L2-1:6	chrX	 73070217	 73073216	-	lnc-NAP1L2-1	lnc-NAP1L2-1:6	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90"	NA	inter
CUST_28595_PI429285431	0.9163771	A	0.909325	A	1.00490010969414	0	lncRNA	30275-1_{1..744}	n325956|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048275|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048275|-0.6773060|-0.1977613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325956|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048275|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048275|-0.6773060|-0.1977613	chr10	 67015451	 67016194	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47_PI429285431	0.9012884	A	1.1861477	A	0.820821656202587	0	lncRNA	46-1_{1..698}	"transcript_id ""ENST00000524467.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000524467.1"" | genecode_v17"	chr11	125810391	125811088	-	ENSG00000254790.1	ENST00000524467.1	RP11-680F20.4	RP11-680F20.4-001	LOC338667	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00chr11:125817319-125821088"	NA	inter
CUST_6730_PI429285431	1.3865582	A	0.90291363	A	1.39827155470593	0	lncRNA	6678-1_{1..613}	"transcript_id ""ENST00000450623.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450623.1"" | genecode_v17"	chr20	 54039603	 54040215	+	ENSG00000235166.2	ENST00000450623.1	RP5-1010E17.1	RP5-1010E17.1-001	NA	NA	NA	inter
CUST_13734_PI429285431	1.4055207	A	1.4504588	A	0.969331405992447	0	lncRNA	15377-1_{1..560}	lnc-CDH10-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CDH10-5:2	chr5	 25298637	 25299196	-	lnc-CDH10-5	lnc-CDH10-5:2	XLOC_004758	linc-CDH10-2	NA	NA	NA	inter
CUST_31380_PI429285431	4.357173	P	4.043116	P	1.24319878595844	0	lncRNA	33158-1_{1..2012}	n337846|D16468|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|229|NULL|-0.3364110|-0.4529025	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337846|D16468|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|229|NULL|-0.3364110|-0.4529025	chrX	126526741	126528752	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37077_PI429285431	0.9098648	A	0.90695333	A	1.00202011491013	0	lncRNA	38205-1_{1..494}	n345522|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1071|NULL|-1.3290700|-0.4230104	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345522|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1071|NULL|-1.3290700|-0.4230104	chr2	 45875865	 45876358	+	NA	NA	NA	NA	PRKCE	NA	chr2:45879043-45886359	inter
CUST_9830_PI429285431	1.1507077	A	1.1655614	A	0.989757020044529	0	lncRNA	11351-1_{1..370}	lnc-HNF1A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HNF1A-1:3	chr12	121345458	121345827	+	lnc-HNF1A-1	lnc-HNF1A-1:3	XLOC_009911	linc-HNF1A	SPPL3	NA	chr12:121335458-121342155	inter
CUST_42591_PI429285431	0.9281256	A	1.9523889	A	0.491661297858378	0	lncRNA	45439-1_{1..70}	ENST00000364819 ncrna:snoRNA chromosome:GRCh37:14:101456428:101456497:1 gene:ENSG00000201689 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364819 ncrna:snoRNA chromosome:GRCh37:14:101456428:101456497:1 gene:ENSG00000201689 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101456428	101456497	+	ENSG00000201689	ENST00000364819	NA	NA	NA	NA	NA	inter
CUST_16046_PI429285431	0.91201764	A	1.6498084	A	0.599656921300521	0	lncRNA	17745-1_{1..305}	lnc-NCEH1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCEH1-1:3	chr3	172313193	172313497	-	lnc-NCEH1-1	lnc-NCEH1-1:3	XLOC_003327	linc-TNFSF10	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30"	NA	inter
CUST_31177_PI429285431	7.828506	P	7.8861895	P	0.96080562341219	0	lncRNA	32972-1_{1..209}	n337606|Y19231|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000408393|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000408393|-1.0186200|-0.2617883	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337606|Y19231|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000408393|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000408393|-1.0186200|-0.2617883	chr11	 94113929	 94114137	-	NA	NA	NA	NA	GPR83	NA	chr11:94110477-94124138	inner
CUST_34414_PI429285431	4.8380957	P	4.3886833	P	1.36548399102244	0	lncRNA	35895-1_{1..3000}	n341285|BC040199|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3754|NULL|-0.9445800|-0.2525466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341285|BC040199|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3754|NULL|-0.9445800|-0.2525466	chr7	101898319	101901318	+	NA	NA	NA	NA	CUX1	NA	chr7:101888319-101911513	inner
CUST_44642_PI429285431	2.8242533	A	2.630228	A	1.14395103406669	0	lncRNA	49206-1_{1..1122}	"gi|397139118|ref|XR_159001.1| PREDICTED: Homo sapiens uncharacterized LOC100996424 (LOC100996424), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139118|ref|XR_159001.1| PREDICTED: Homo sapiens uncharacterized LOC100996424 (LOC100996424), misc_RNA"	NA	NA	NA	NA	NA	XR_159001.1	NA	NA	NA	"hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30"	NA	Unknown
CUST_11417_PI429285431	8.525699	P	8.405221	P	1.08709498390571	0	lncRNA	12984-1_{1..365}	lnc-C13orf15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C13orf15-1:1	chr13	 42080126	 42080490	+	lnc-C13orf15-1	lnc-C13orf15-1:1	XLOC_010361	linc-DGKH-3	NA	NA	NA	inter
CUST_6725_PI429285431	6.5838323	P	7.0172443	P	0.740508396912878	0	lncRNA	6673-1_{1..381}	"transcript_id ""ENST00000444112.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444112.1"" | genecode_v17"	chr20	 52224893	 52225273	+	ENSG00000235415.1	ENST00000444112.1	AC005808.3	AC005808.3-001	NA	NA	NA	inter
CUST_18639_PI429285431	2.8883348	A	2.7146294	A	1.12795178487597	0	lncRNA	20343-1_{1..602}	lnc-ARHGEF35-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARHGEF35-1:11	chr7	144052075	144052676	-	lnc-ARHGEF35-1	lnc-ARHGEF35-1:11	ENSG00000244479	RP4-798C17.6	ARHGEF5	NA	chr7:144052489-144062312	inter
CUST_21001_PI429285431	0.9269355	A	0.91418207	A	1.00887919227232	0	lncRNA	22630-1_{1..500}	lnc-TIPIN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIPIN-2:1	chr15	 66623748	 66624247	-	lnc-TIPIN-2	lnc-TIPIN-2:1	ENSG00000260773.1	RP11-352G18.2	DIS3L	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_DIS3L:range=chr15:66587436-666256505'pad=0,hg19_refFlat_DIS3L:range=chr15:66587436-666256505'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_DIS3L:range=chr15:66585935-666256505'pad=0,hg19_refFlat_DIS3L:range=chr15:66585935-666256505'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70chr15:66613748-66626236"	NA	inner
CUST_23264_PI429285431	0.9118681	A	0.9135282	A	0.998849968159607	0	lncRNA	24836-1_{1..608}	lnc-TRPM1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRPM1-1:4	chr15	 31521475	 31522082	-	lnc-TRPM1-1	lnc-TRPM1-1:4	ENSG00000259772.1	RP11-16E12.2	LOC283710	NA	chr15:31514970-31523050	inner
CUST_20759_PI429285431	2.4571254	A	1.996006	A	1.376609527522	0	lncRNA	22392-1_{1..401}	lnc-TMEM35-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM35-1:1	chrX	100298557	100298957	+	lnc-TMEM35-1	lnc-TMEM35-1:1	ENSG00000225839.1	TRMT2B-AS1	TRMT2B	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70chrX:100288557-100307105"	NA	inner
CUST_6053_PI429285431	7.5518556	P	6.1716976	P	2.60296876526719	0	lncRNA	5979-1_{1..643}	"transcript_id ""ENST00000579007.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579007.1"" | genecode_v17"	chr18	  3466295	  3466937	+	ENSG00000266835.1	ENST00000579007.1	RP11-838N2.4	RP11-838N2.4-003	TGIF1	NA	chr18:3456295-3458409	inter
CUST_30153_PI429285431	1.7923923	A	0.921152	A	1.82923483695813	0	lncRNA	31927-1_{1..323}	n334826|AJ277393|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246374|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246374|-1.3553300|-0.4413065	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334826|AJ277393|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246374|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246374|-1.3553300|-0.4413065	chr2	167054880	167055202	-	NA	NA	NA	NA	SCN9A	NA	chr2:167051695-167065203	inner
CUST_28572_PI429285431	0.9175681	A	0.9112679	A	1.00437651495753	0	lncRNA	30252-1_{1..351}	n325931|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049106|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049106|-1.0801800|-0.3552847	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325931|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049106|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049106|-1.0801800|-0.3552847	chr10	 85422141	 85422491	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24411_PI429285431	0.91391087	A	0.90338033	A	1.00732591830777	0	lncRNA	25964-1_{1..766}	lnc-ANP32A-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANP32A-2:4	chr15	 69580761	 69581526	-	lnc-ANP32A-2	lnc-ANP32A-2:4	ENSG00000261634.1	RP11-352D13.6	NA	NA	NA	inter
CUST_15195_PI429285431	0.9238341	A	0.9089031	A	1.010403120624	0	lncRNA	16863-1_{1..431}	lnc-GPR137B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR137B-2:1	chr1	236138835	236139265	+	lnc-GPR137B-2	lnc-GPR137B-2:1	XLOC_000628	linc-GPR137B-3	NID1	NA	chr1:236139130-236148865	inter
CUST_11556_PI429285431	2.5796404	A	2.5568738	A	1.01590577590121	0	lncRNA	13130-1_{1..2314}	lnc-RP11-204N11.1.1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-204N11.1.1-3:3	chr14	 98444314	 98446627	-	lnc-RP11-204N11.1.1-3	lnc-RP11-204N11.1.1-3:3	XLOC_011117	linc-ATG2B-2	NA	NA	NA	inter
CUST_30998_PI429285431	4.708875	P	5.368534	P	0.633027903797468	0	lncRNA	32786-1_{1..649}	n337161|AF399612|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000384019|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000384019|5.0364600|-0.0404239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337161|AF399612|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000384019|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000384019|5.0364600|-0.0404239	chr1	248737193	248737841	-	NA	NA	NA	NA	OR2T34	NA	chr1:248737102-248738058	inner
CUST_19334_PI429285431	0.89686865	A	0.90606254	A	0.993647543775719	0	lncRNA	21000-1_{1..870}	lnc-PHKB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHKB-1:1	chr16	 47351460	 47352329	+	lnc-PHKB-1	lnc-PHKB-1:1	ENSG00000261369.1	RP11-474B12.1	ITFG1	NA	chr16:47341460-47361725	inner
LNCA_21_P0011875	0.9108316	A	0.91844434	A	0.994737148318642	0	lncRNA	XR_108436	XR_108436	XR_108436	NA	NA	LOC440934	uncharacterized LOC440934	NA	THC2606872	NA	"PREDICTED: Homo sapiens hypothetical LOC440934 (LOC440934), miscRNA [XR_108436]"	chr2:223186290-223186349	hs|2q36.1	Agilent_HUMAN_G3V2	XR_108436	XR_108436	chr2	223186290	223186349	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40043_PI429285431	1.1156126	A	1.1302614	A	0.989897601116654	0	lncRNA	40896-1_{1..1789}	n407243|NR_026710_2|lncRNA|Homosapiens||RefGeneNoncode|NR_026710_2||-0.3174080|-0.1482796	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407243|NR_026710_2|lncRNA|Homosapiens||RefGeneNoncode|NR_026710_2||-0.3174080|-0.1482796	chrX	  1519423	  1521211	+	NA	NA	NA	NA	SLC25A6	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ASMTL:range=chrX:1522162-15611295'pad=0,hg19_refFlat_ASMTL:range=chrX:1522162-15611295'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-58.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ASMTL:range=chrY:1472162-15111295'pad=0,hg19_refFlat_ASMTL:range=chrY:1472162-15111295'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ASMTL:range=chrX:1522162-15717335'pad=0,hg19_refFlat_ASMTL:range=chrX:1522162-15717335'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ASMTL:range=chrY:1472162-15217335'pad=0,hg19_refFlat_ASMTL:range=chrY:1472162-15217335'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50chrX:1509423-1511039"	NA	inner
CUST_29112_PI429285431	2.7322001	A	3.3759804	P	0.640033666666838	0	lncRNA	30846-1_{1..850}	n326611|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000022107|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000022107|-1.1236000|-0.3357656	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326611|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000022107|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000022107|-1.1236000|-0.3357656	chr1	 53604927	 53605776	-	NA	NA	NA	NA	SLC1A7	NA	chr1:53594927-53608289	inner
CUST_51469_PI429285431	3.115943	P	3.9658582	P	0.554817346618251	0	lncRNA	55045-1_{1..2887}	hg19_lincRNAsTranscripts_TCONS_l2_00010128 range=chr16:33489205-33499352 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010128 range=chr16:33489205-33499352 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 33489205	 33492091	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60"	NA	inter
CUST_33058_PI429285431	3.4789457	P	2.5914073	A	1.85001683601724	0	lncRNA	34669-1_{1..918}	n339747|BC022840|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2193|NULL|3.4671400|-0.2461808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339747|BC022840|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2193|NULL|3.4671400|-0.2461808	chr3	193923694	193924611	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47909_PI429285431	4.960187	P	4.9081163	P	1.03675190632626	0	lncRNA	51801-1_{1..2536}	"gi|410171966|ref|XR_171509.1| PREDICTED: Homo sapiens putative POM121-like protein 1-like (LOC101060375), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171966|ref|XR_171509.1| PREDICTED: Homo sapiens putative POM121-like protein 1-like (LOC101060375), misc_RNA"	NA	NA	NA	NA	NA	XR_171509.1	NA	NA	NA	NA	NA	Unknown
CUST_17084_PI429285431	2.6649148	A	0.9037196	A	3.38978835501936	0	lncRNA	18792-1_{1..262}	lnc-TRIML1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIML1-6:1	chr4	189717892	189718153	+	lnc-TRIML1-6	lnc-TRIML1-6:1	XLOC_003837	linc-FRG1-7	NA	NA	NA	inter
CUST_41489_PI429285431	0.9173851	A	0.9086974	A	1.00604002257761	0	lncRNA	42696-1_{1..72}	ENST00000390738 ncrna:miRNA chromosome:GRCh37:X:73438382:73438453:-1 gene:ENSG00000212027 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390738 ncrna:miRNA chromosome:GRCh37:X:73438382:73438453:-1 gene:ENSG00000212027 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 73438382	 73438453	-	ENSG00000212027	ENST00000390738	NA	NA	NA	NA	NA	inter
CUST_22609_PI429285431	5.1361513	P	4.72677	P	1.32811612913521	0	lncRNA	24194-1_{1..905}	lnc-FOXD4L3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FOXD4L3-4:1	chr9	 71043498	 71044402	+	lnc-FOXD4L3-4	lnc-FOXD4L3-4:1	ENSG00000229019.1	RP11-88I18.3	PGM5	NA	chr9:71033498-71054285	inner
CUST_27537_PI429285431	3.3688126	P	3.3191957	A	1.03499005124051	0	lncRNA	29112-1_{1..475}	n324721|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319609|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319609|-1.0419200|-0.1603752	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324721|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319609|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319609|-1.0419200|-0.1603752	chr22	 19022508	 19022982	+	NA	NA	NA	NA	DGCR2	NA	chr22:19023795-19046406	inter
CUST_23117_PI429285431	1.1958894	A	0.9111061	A	1.21822726611273	0	lncRNA	24688-1_{1..571}	lnc-FANCF-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FANCF-3:2	chr11	 22359541	 22360111	-	lnc-FANCF-3	lnc-FANCF-3:2	ENSG00000254768.1	CTD-2140G10.2	SLC17A6	NA	chr11:22359667-22369770	inner
CUST_8997_PI429285431	2.4022095	A	0.9184202	A	2.79682367042803	0	lncRNA	10527-2_{3001..3665}	lnc-RP11-1070N10.3.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-1070N10.3.1-2:1	chr14	 95656287	 95656951	+	lnc-RP11-1070N10.3.1-2	lnc-RP11-1070N10.3.1-2:1	ENSG00000244991	ENST00000501260	CLMN	NA	chr14:95648276-95664010	inner
LNCA_21_P0009860	0.9252316	A	1.1021663	A	0.884580472758718	0	lncRNA	BC041864	NA	BC041864	NA	Hs.446269	XLOC_013573	NA	ENST00000416190	THC2607558	NA	"BROAD Institute lincRNA (XLOC_013573), lincRNA [TCONS_00027956]"	chr19:21724505-21724564	hs|19p12	Agilent_HUMAN_G3V2	BC041864	BC041864	chr19	 21724505	 21724564	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49676_PI429285431	1.7042425	A	0.9246528	A	1.71664259323091	0	lncRNA	53454-2_{3001..3371}	hg19_lincRNAsTranscripts_TCONS_l2_00026960 range=chr7:149244462-149321836 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026960 range=chr7:149244462-149321836 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	149247462	149247832	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40336_PI429285431	5.136605	P	5.718926	P	0.667888417325001	0	lncRNA	41141-1_{1..2858}	n408890|NR_030725|lncRNA|Homosapiens||RefGeneNoncode|NR_030725||5.0420300|-0.1947177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408890|NR_030725|lncRNA|Homosapiens||RefGeneNoncode|NR_030725||5.0420300|-0.1947177	chr1	 28832454	 28835311	+	NA	NA	NA	NA	RCC1	NA	chr1:28832455-28865708	inter
CUST_43028_PI429285431	17.346552	P	17.400452	P	0.963328664560808	0	lncRNA	46434-1_{1..126}	ENST00000515932 ncrna:snRNA chromosome:GRCh37:5:112829532:112829657:1 gene:ENSG00000251741 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515932 ncrna:snRNA chromosome:GRCh37:5:112829532:112829657:1 gene:ENSG00000251741 gene_biotype:snRNA transcript_biotype:snRNA	chr5	112829532	112829657	+	ENSG00000251741	ENST00000515932	NA	NA	MCC	NA	chr5:112819532-112824527	inter
CUST_41072_PI429285431	11.773424	P	12.393909	P	0.650452224285765	0	lncRNA	41746-1_{1..77}	ENST00000583939 ncrna:miRNA chromosome:GRCh37:HSCHR6_MHC_DBB:30574247:30574323:-1 gene:ENSG00000264822 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583939 ncrna:miRNA chromosome:GRCh37:HSCHR6_MHC_DBB:30574247:30574323:-1 gene:ENSG00000264822 gene_biotype:miRNA transcript_biotype:miRNA	chrHSCHR6_MHC_DBB	 30574247	 30574323	-	ENSG00000264822	ENST00000583939	NA	NA	NA	NA	NA	Unknown
CUST_17587_PI429285431	0.9000631	A	0.8996523	A	1.00028478540544	0	lncRNA	19313-1_{1..545}	lnc-RP11-65D24.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-65D24.2.1-1:1	chr13	112514374	112514918	+	lnc-RP11-65D24.2.1-1	lnc-RP11-65D24.2.1-1:1	XLOC_010502	linc-SOX1-2	NA	NA	NA	inter
CUST_31158_PI429285431	11.842255	P	13.315802	P	0.360095880427257	0	lncRNA	32953-1_{1..289}	n337541|EF488667|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395504|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395504|0.3376450|-0.1662527	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337541|EF488667|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395504|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395504|0.3376450|-0.1662527	chr7	 93516131	 93516419	-	NA	NA	NA	NA	TFPI2	NA	chr7:93515745-93520065	inner
CUST_17346_PI429285431	4.873377	P	5.28753	P	0.750459957118732	0	lncRNA	19064-1_{1..840}	lnc-AC092327.1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092327.1-2:4	chr16	 86260246	 86261085	-	lnc-AC092327.1-2	lnc-AC092327.1-2:4	XLOC_012044	linc-COX4NB-7	NA	NA	NA	inter
CUST_24955_PI429285431	9.050944	P	8.826378	P	1.16842570300083	0	lncRNA	26494-1_{1..2323}	lnc-MPP7-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MPP7-3:1	chr10	 28821371	 28823693	-	lnc-MPP7-3	lnc-MPP7-3:1	ENSG00000254635.1	RP11-164A7.1	WAC	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.74;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90chr10:28821427-28831672"	NA	inter
CUST_28036_PI429285431	6.1480513	P	6.364076	P	0.860934448381872	0	lncRNA	29651-1_{1..703}	n325298|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327025|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327025|-0.8533180|-0.3330635	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325298|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327025|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327025|-0.8533180|-0.3330635	chr2	 60439854	 60440556	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33233_PI429285431	0.9032908	A	0.914093	A	0.992540447131489	0	lncRNA	34821-1_{1..3000}	n339934|BX648123|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2383|NULL|-0.8298580|-0.2147118	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339934|BX648123|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2383|NULL|-0.8298580|-0.2147118	chr10	   407894	   410893	+	NA	NA	NA	NA	DIP2C	"hg19_refFlat_DIP2A:range=chr21:47879045-479763425'pad=0,hg19_refFlat_DIP2A:range=chr21:47879045-479763425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_DIP2A:range=chr21:47879045-479698315'pad=0,hg19_refFlat_DIP2A:range=chr21:47879045-479698315'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_DIP2C:range=chr10:323265-7355185'pad=0,hg19_refFlat_DIP2C:range=chr10:323265-7355185'pad=0 3'pad=0 strand=- repeatMasking=none,-97.20;hg19_refFlat_DIP2A:range=chr21:47879045-479875355'pad=0,hg19_refFlat_DIP2A:range=chr21:47879045-479875355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70chr10:397894-420997"	NA	inner
CUST_36076_PI429285431	1.14456	A	0.89722514	A	1.18701227985824	0	lncRNA	37382-1_{1..3000}	n344666|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_215|NULL|-1.3220900|-0.3608641	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n344666|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_215|NULL|-1.3220900|-0.3608641	chr1	200380797	200383796	+	NA	NA	NA	NA	ZNF281	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10chr1:200375420-200379166"	NA	inter
CUST_5173_PI429285431	1.0437204	A	0.90649766	A	1.09978593392085	0	lncRNA	5114-1_{1..581}	"transcript_id ""ENST00000560900.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560900.1"" | genecode_v17"	chr15	 48176507	 48177087	+	ENSG00000259754.1	ENST00000560900.1	RP11-208K4.1	RP11-208K4.1-001	NA	NA	NA	inter
LNCA_21_P0010200	5.2947974	P	5.188029	P	1.07681349833746	0	lncRNA	ENST00000427911	NA	NA	NA	NA	XLOC_014056	NA	ENST00000427911	NA	NA	"BROAD Institute lincRNA (XLOC_014056), lincRNA [TCONS_00028917]"	chr21:34216881-34216822	hs|21q22.11	Agilent_HUMAN_G3V2	ENST00000427911	ENST00000427911	chr21	 34216822	 34216881	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6197_PI429285431	0.9993447	A	0.9036315	A	1.06859353945717	0	lncRNA	6123-1_{1..430}	"transcript_id ""ENST00000592045.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592045.1"" | genecode_v17"	chr18	 53709484	 53709913	+	ENSG00000267057.1	ENST00000592045.1	RP11-456O19.2	RP11-456O19.2-004	NA	NA	NA	inter
CUST_2172_PI429285431	0.90822816	A	0.90585285	A	1.00164779555501	0	lncRNA	2163-1_{1..365}	"transcript_id ""ENST00000510261.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510261.1"" | genecode_v17"	chr5	 64782271	 64782635	-	ENSG00000250081.1	ENST00000510261.1	CTD-2116N20.1	CTD-2116N20.1-001	ADAMTS6	NA	chr5:64772271-64777704	inter
CUST_44586_PI429285431	0.9152256	A	0.9046267	A	1.00737365010783	0	lncRNA	49166-1_{1..1866}	"gi|310119593|ref|XR_110553.1| PREDICTED: Homo sapiens uncharacterized LOC100129233 (LOC100129233), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119593|ref|XR_110553.1| PREDICTED: Homo sapiens uncharacterized LOC100129233 (LOC100129233), misc_RNA"	NA	NA	NA	NA	NA	XR_110553.1	NA	NA	NA	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.46;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90"	NA	Unknown
CUST_10124_PI429285431	1.792129	A	1.7031763	A	1.06359780135118	0	lncRNA	11649-1_{1..444}	lnc-LYPLAL1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYPLAL1-1:3	chr1	219467970	219468413	+	lnc-LYPLAL1-1	lnc-LYPLAL1-1:3	XLOC_000566	linc-IARS2-3	NA	NA	NA	inter
CUST_843_PI429285431	1.1697879	A	1.0980713	A	1.0509664391573	0	lncRNA	837-1_{1..1923}	"transcript_id ""ENST00000413792.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413792.1"" | genecode_v17"	chr2	 38053390	 38055312	-	ENSG00000237803.1	ENST00000413792.1	LINC00211	LINC00211-003	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30"	NA	inter
CUST_7626_PI429285431	0.92411405	A	0.9094889	A	1.01018893881096	0	lncRNA	9258-1_{1..2568}	lnc-SVIL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SVIL-1:1	chr10	 29745065	 29747632	-	lnc-SVIL-1	lnc-SVIL-1:1	ENSG00000249968	ENST00000507250	SVIL	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.71;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90chr10:29746277-29756228"	NA	inter
CUST_4189_PI429285431	0.9119945	A	0.904089	A	1.00549471591566	0	lncRNA	4148-1_{1..641}	"transcript_id ""ENST00000541288.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000541288.1"" | genecode_v17"	chr12	 23252302	 23252942	+	ENSG00000256321.1	ENST00000541288.1	RP11-153K16.1	RP11-153K16.1-001	NA	NA	NA	inter
CUST_34637_PI429285431	1.0963638	A	0.9159406	A	1.13321625407261	0	lncRNA	36091-1_{1..1772}	n341537|BC037827|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4007|NULL|2.7458000|-0.3096451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341537|BC037827|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4007|NULL|2.7458000|-0.3096451	chr8	 77523115	 77524886	-	NA	NA	NA	NA	ZFHX4	NA	chr8:77593515-77605513	inner
CUST_9915_PI429285431	5.85855	P	6.216239	P	0.78041369486489	0	lncRNA	11439-1_{1..328}	lnc-XRCC2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-XRCC2-2:1	chr7	153125396	153125723	-	lnc-XRCC2-2	lnc-XRCC2-2:1	XLOC_006657	linc-XRCC2-5	NA	NA	NA	inter
CUST_44266_PI429285431	0.9090028	A	1.4254175	A	0.6991070554643	0	lncRNA	48907-1_{1..3000}	"gi|343098502|ref|NR_033119.2| Homo sapiens Zic family member 4 (ZIC4), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|343098502|ref|NR_033119.2| Homo sapiens Zic family member 4 (ZIC4), transcript variant 5, non-coding RNA"	Chr3	147103835	147106834	-	84107	NR_033119.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0010173	0.9146209	A	1.4683441	A	0.681259713409446	0	lncRNA	ENST00000457565	NA	NA	NA	NA	XLOC_013999	NA	ENST00000457565	NA	NA	"BROAD Institute lincRNA (XLOC_013999), lincRNA [TCONS_00028865]"	chr21:14389008-14388949	hs|21q11.2	Agilent_HUMAN_G3V2	ENST00000457565	ENST00000457565	chr21	 14388949	 14389008	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19095_PI429285431	3.4860592	P	3.0432363	A	1.35926137367864	0	lncRNA	20784-1_{1..807}	lnc-RNF214-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-RNF214-1:2	chr11	117162061	117162867	+	lnc-RNF214-1	lnc-RNF214-1:2	BACE1AS	BACE1-AS	BACE1	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BACE1:range=chr11:117160282-1171662635'pad=0,hg19_refFlat_BACE1:range=chr11:117160282-1171662635'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BACE1:range=chr11:117160282-1171865115'pad=0,hg19_refFlat_BACE1:range=chr11:117160282-1171865115'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr11:117156402-117172857"	NA	inner
CUST_8114_PI429285431	0.9011015	A	0.89580834	A	1.00367567772558	0	lncRNA	9718-1_{1..1242}	lnc-ULK4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ULK4-1:1	chr3	 41266094	 41267335	-	lnc-ULK4-1	lnc-ULK4-1:1	ENSG00000245715	ENST00000502197	CTNNB1	"hg19_refFlat_CTNNB1:range=chr3:41265560-412808335'pad=0,hg19_refFlat_CTNNB1:range=chr3:41265560-412808335'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20chr3:41256094-41276542"	NA	inner
CUST_40225_PI429285431	9.160843	P	9.274802	P	0.924048832649242	0	lncRNA	41047-1_{1..2399}	n408060|NR_027889|lncRNA|Homosapiens||RefGeneNoncode|NR_027889||4.9076500|-0.1566249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408060|NR_027889|lncRNA|Homosapiens||RefGeneNoncode|NR_027889||4.9076500|-0.1566249	chr20	 48740273	 48742671	-	NA	NA	NA	NA	TMEM189-UBE2V1	NA	chr20:48730273-48770335	inner
CUST_17740_PI429285431	0.90152806	A	0.90115166	A	1.00026093463628	0	lncRNA	19470-1_{1..591}	lnc-CD1D-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD1D-2:1	chr1	158121454	158122044	+	lnc-CD1D-2	lnc-CD1D-2:1	XLOC_000428	linc-CD1D-2	NA	NA	NA	inter
CUST_50323_PI429285431	3.5906425	P	3.668939	P	0.947175388871378	0	lncRNA	54042-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00029048 range=chr9:132028944-132051514 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029048 range=chr9:132028944-132051514 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132028944	132031943	+	NA	NA	NA	NA	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60"	NA	inter
CUST_11606_PI429285431	0.9071417	A	0.92527497	A	0.987509635313635	0	lncRNA	13186-1_{1..1993}	lnc-PTGFR-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTGFR-1:5	chr1	 78759275	 78761267	+	lnc-PTGFR-1	lnc-PTGFR-1:5	XLOC_000264	linc-PTGFR	NA	NA	NA	inter
CUST_22645_PI429285431	0.88759243	A	1.2218348	A	0.793200575821625	0	lncRNA	24231-1_{1..858}	lnc-AGBL4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGBL4-1:1	chr1	 50641118	 50641975	-	lnc-AGBL4-1	lnc-AGBL4-1:1	ENSG00000237337.1	RP11-567C20.2	ELAVL4	NA	chr1:50631118-50651540	inner
CUST_39370_PI429285431	3.932125	P	4.2507753	P	0.801819661775529	0	lncRNA	40334-1_{1..992}	n386487|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mix.1||-1.1101000|-0.2455372	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n386487|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mix.1||-1.1101000|-0.2455372	chr9	 21994789	 21995780	+	NA	NA	NA	NA	CDKN2A	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50chr9:21984789-21994490"	NA	inter
CUST_47771_PI429285431	1.5725725	A	1.808594	A	0.849083592744738	0	lncRNA	51702-3_{6001..6830}	"gi|385137060|ref|NR_047598.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 28, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137060|ref|NR_047598.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 28, non-coding RNA"	ChrY	 15366259	 15367088	-	7404	NR_047598.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0011575	0.9100827	A	0.89828575	A	1.00821054579218	0	lncRNA	TCONS_l2_00011129	NA	NA	NA	NA	XLOC_l2_006013	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006013), lincRNA [TCONS_l2_00011129]"	chr17:19342434-19342375	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00011129	TCONS_l2_00011129	chr17	 19342375	 19342434	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45858_PI429285431	0.9928223	A	0.88932216	A	1.07437686197254	0	lncRNA	50187-1_{1..1517}	"gi|373838734|ref|NR_046090.1| Homo sapiens uncharacterized LOC283214 (LOC283214), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|373838734|ref|NR_046090.1| Homo sapiens uncharacterized LOC283214 (LOC283214), non-coding RNA"	Chr11	 75469500	 75471016	-	283214	NR_046090.1	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
CUST_14137_PI429285431	0.9154841	A	0.9069885	A	1.00590607367172	0	lncRNA	15789-1_{1..3000}	lnc-VSTM2B-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-VSTM2B-6:2	chr19	 29461108	 29464107	+	lnc-VSTM2B-6	lnc-VSTM2B-6:2	XLOC_013027	linc-VSTM2B-6	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
LNCA_21_P0014598	3.291893	P	3.546951	P	0.83795344613679	0	lncRNA	ENST00000454219	XR_110479	XR_110479	NA	Hs.534953	LOC730081	NA	ENST00000454219	THC2559399	NA	"PREDICTED: Homo sapiens hypothetical LOC730081 (LOC730081), miscRNA [XR_110479]"	chr1:100434923-100434864	hs|1p21.2	Agilent_HUMAN_G3V2	ENST00000454219	ENST00000454219	chr1	100434864	100434923	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16547_PI429285431	0.9114512	A	0.9158343	A	0.996966477049944	0	lncRNA	18248-1_{1..306}	lnc-SLCO1A2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLCO1A2-2:1	chr12	 20417034	 20417339	-	lnc-SLCO1A2-2	lnc-SLCO1A2-2:1	XLOC_010028	linc-PLCZ1-4	NA	NA	NA	inter
CUST_8895_PI429285431	0.9072236	A	1.2739077	A	0.775563009060885	0	lncRNA	10430-2_{3001..5182}	lnc-CNOT7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CNOT7-1:1	chr8	 17034689	 17036870	-	lnc-CNOT7-1	lnc-CNOT7-1:1	ENSG00000250168	ENST00000512360	ZDHHC2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00chr8:17021689-17044318"	NA	inner
LNCA_21_P0002390	0.91075635	A	0.89902735	A	1.00816306084815	0	lncRNA	TCONS_00005069	NA	NA	NA	NA	XLOC_001964	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001964), lincRNA [TCONS_00005069]"	chr2:6778374-6778315	hs|2p25.2	Agilent_HUMAN_G3V2	TCONS_00005069	TCONS_00005069	chr2	  6778315	  6778374	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26624_PI429285431	1.048575	A	2.258924	A	0.432164058906526	0	lncRNA	28127-1_{1..854}	lnc-TMTC3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TMTC3-3:1	chr12	 89987092	 89987945	+	lnc-TMTC3-3	lnc-TMTC3-3:1	ENSG00000258302.1	RP11-981P6.1	ATP2B1	NA	chr12:89981826-89997798	inner
CUST_7252_PI429285431	0.92151934	A	0.92173946	A	0.999847436081673	0	lncRNA	7963-1_{1..247}	"transcript_id ""ENST00000516549.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516549.1"" | genecode_v17"	chr8	 64521912	 64522158	-	ENSG00000252358.1	ENST00000516549.1	RN7SKP135	RN7SKP135-201	NA	NA	NA	inter
CUST_12394_PI429285431	0.9092617	A	0.9029196	A	1.00440568535453	0	lncRNA	14007-1_{1..488}	lnc-CTD-2523D13.1.1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2523D13.1.1-4:2	chr11	119784004	119784491	+	lnc-CTD-2523D13.1.1-4	lnc-CTD-2523D13.1.1-4:2	XLOC_009301	linc-OAF-4	NA	NA	NA	inter
CUST_6377_PI429285431	4.0274563	P	4.269973	P	0.845269500607703	0	lncRNA	6303-1_{1..902}	"transcript_id ""ENST00000596186.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596186.1"" | genecode_v17"	chr19	 18392659	 18393560	+	ENSG00000267959.1	ENST00000596186.1	MIR3188	MIR3188-001	KIAA1683	NA	chr19:18382659-18385319	inter
CUST_20240_PI429285431	1.0820144	A	0.9160301	A	1.12193127114714	0	lncRNA	21883-1_{1..377}	lnc-GUSB-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GUSB-3:1	chr7	 65593653	 65594029	-	lnc-GUSB-3	lnc-GUSB-3:1	ENSG00000234185.1	RP5-1132H15.1	CRCP	NA	chr7:65583653-65603711	inter
CUST_3345_PI429285431	4.4499927	P	3.3868787	P	2.0894366239354	0	lncRNA	3321-3_{6001..9000}	"transcript_id ""ENST00000560295.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560295.1"" | genecode_v17"	chr8	141536255	141539254	-	ENSG00000259758.1	ENST00000560295.1	CTA-204B4.6	CTA-204B4.6-001	EIF2C2	NA	chr8:141541264-141549600	inter
CUST_38594_PI429285431	2.2547147	A	2.6919577	A	0.738544624724121	0	lncRNA	39603-1_{1..301}	n383671|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002stn.1||2.0072500|-0.0752967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383671|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002stn.1||2.0072500|-0.0752967	chr2	 89986779	 89987079	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9499_PI429285431	5.017702	P	5.2044578	P	0.878579169710399	0	lncRNA	11008-1_{1..1610}	lnc-AC120194.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC120194.1-1:3	chr8	 71396926	 71398535	+	lnc-AC120194.1-1	lnc-AC120194.1-1:3	XLOC_006833	linc-XKR9-3	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90"	NA	inter
CUST_41565_PI429285431	0.90525186	A	0.88948035	A	1.01099195009755	0	lncRNA	42878-1_{1..94}	ENST00000390235 ncrna:miRNA chromosome:GRCh37:21:37093013:37093106:1 gene:ENSG00000211590 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390235 ncrna:miRNA chromosome:GRCh37:21:37093013:37093106:1 gene:ENSG00000211590 gene_biotype:miRNA transcript_biotype:miRNA	chr21	 37093013	 37093106	+	ENSG00000211590	ENST00000390235	NA	NA	NA	NA	NA	inter
CUST_40537_PI429285431	6.976845	P	6.8035154	P	1.12765800894561	0	lncRNA	41295-1_{1..2373}	n409650|NR_034035_2|lncRNA|Homosapiens||RefGeneNoncode|NR_034035_2||-1.1607600|-0.4023509	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409650|NR_034035_2|lncRNA|Homosapiens||RefGeneNoncode|NR_034035_2||-1.1607600|-0.4023509	chr1	    36272	    38644	-	NA	NA	NA	NA	OR4F5	NA	chr1:52453-60281	inter
CUST_48824_PI429285431	3.1110578	A	3.2688324	P	0.89640673907214	0	lncRNA	52662-1_{1..725}	hg19_lincRNAsTranscripts_TCONS_l2_00014352 range=chr2:243030887-243064759 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014352 range=chr2:243030887-243064759 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	243030887	243031611	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41533_PI429285431	1.3638204	A	2.4473457	A	0.471874364016023	0	lncRNA	42790-1_{1..81}	ENST00000384885 ncrna:miRNA chromosome:GRCh37:9:97848296:97848376:-1 gene:ENSG00000207617 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384885 ncrna:miRNA chromosome:GRCh37:9:97848296:97848376:-1 gene:ENSG00000207617 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 97848296	 97848376	-	ENSG00000207617	ENST00000384885	NA	NA	C9orf3	NA	chr9:97838296-97849500	inner
CUST_50448_PI429285431	6.055224	P	5.240782	P	1.75861782889472	0	lncRNA	54154-1_{1..472}	hg19_lincRNAsTranscripts_TCONS_l2_00030232 range=chrX:61998718-61999787 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030232 range=chrX:61998718-61999787 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 61998718	 61999189	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46066_PI429285431	7.659772	P	7.8885665	P	0.85334764178312	0	lncRNA	50339-2_{3001..3459}	"gi|302191711|ref|NR_036476.1| Homo sapiens transmembrane protein 198B, pseudogene (TMEM198B), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302191711|ref|NR_036476.1| Homo sapiens transmembrane protein 198B, pseudogene (TMEM198B), transcript variant 1, non-coding RNA"	Chr12	 56226392	 56226850	+	440104	NR_036476.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20"	NA	inter
CUST_10781_PI429285431	6.2931814	P	6.4328985	P	0.907697129411044	0	lncRNA	12316-1_{1..1296}	lnc-CHST8-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CHST8-1:2	chr19	 34047592	 34048887	+	lnc-CHST8-1	lnc-CHST8-1:2	XLOC_013043	linc-CHST8	NA	NA	NA	inter
CUST_20702_PI429285431	0.9143174	A	0.91874945	A	0.996932650995393	0	lncRNA	22338-1_{1..491}	lnc-PTGDR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTGDR2-1:1	chr11	 60618239	 60618729	-	lnc-PTGDR2-1	lnc-PTGDR2-1:1	ENSG00000256813.1	RP11-804A23.4	GPR44	NA	chr11:60618398-60623444	inner
CUST_39167_PI429285431	8.092324	P	8.015289	P	1.0548479075275	0	lncRNA	40144-1_{1..1176}	n385849|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004fmr.1||1.8773600|-0.2950634	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385849|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004fmr.1||1.8773600|-0.2950634	chrX	154044611	154045786	-	NA	NA	NA	NA	LOC100132963	NA	chrX:154051623-154055787	inter
CUST_15614_PI429285431	1.4600971	A	2.2250843	A	0.588458589557899	0	lncRNA	17301-1_{1..438}	lnc-SMARCAL1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMARCAL1-3:2	chr2	217443644	217444081	+	lnc-SMARCAL1-3	lnc-SMARCAL1-3:2	XLOC_001857	linc-IGFBP2-2	NA	NA	NA	inter
CUST_12710_PI429285431	1.0284694	A	1.3453581	A	0.802799320111896	0	lncRNA	14328-1_{1..1439}	lnc-DLK1-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLK1-3:7	chr14	101137898	101139336	+	lnc-DLK1-3	lnc-DLK1-3:7	XLOC_010930	linc-DLK1-2	NA	NA	NA	inter
LNCA_19_P00328053	0.92498595	A	2.4058304	A	0.358279039814398	0	lncRNA	THC2689105	NA	NA	NA	NA	XLOC_010669	NA	NA	THC2689105	NA	"BROAD Institute lincRNA (XLOC_010669), lincRNA [TCONS_00022063]"	chr13:080616141-080616082	hs|13q31.1	Agilent_HUMAN_G3V2	THC2689105	THC2689105	chr13	 80616082	 80616141	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3330906	1.0797724	A	0.913615	A	1.12206589277458	0	lncRNA	XR_110087	XR_110087	XR_110087	   157693	Hs.591390	FAM87A	"family with sequence similarity 87, member A"	NA	THC2618367	GO:0016020|GO:0016021	"PREDICTED: Homo sapiens family with sequence similarity 87, member A (FAM87A), miscRNA [XR_110087]"	chr8:327835-327776	hs|8p23.3	Agilent_HUMAN_G3V2	XR_110087	XR_110087	chr8	   327776	   327835	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33910_PI429285431	5.878915	P	5.6051188	P	1.20898487846102	0	lncRNA	35452-1_{1..510}	n340703|BC018467|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3166|NULL|0.1383680|-0.1106047	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340703|BC018467|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3166|NULL|0.1383680|-0.1106047	chr17	 44344402	 44344911	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28636_PI429285431	0.90285736	A	0.9035202	A	0.999540659851841	0	lncRNA	30325-1_{1..712}	n326011|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047602|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047602|-1.2552300|-0.3583920	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326011|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047602|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047602|-1.2552300|-0.3583920	chr10	 38104304	 38105015	-	NA	NA	NA	NA	ZNF248	NA	chr10:38107534-38123065	inner
CUST_40366_PI429285431	1.1943923	A	0.8947225	A	1.23086266470415	0	lncRNA	41165-1_{1..1474}	n409114|NR_033249|lncRNA|Homosapiens||RefGeneNoncode|NR_033249||0.8718010|-0.3086112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409114|NR_033249|lncRNA|Homosapiens||RefGeneNoncode|NR_033249||0.8718010|-0.3086112	chr16	 81115551	 81117024	-	NA	NA	NA	NA	PKD1L2	NA	chr16:81134484-81139980	inner
CUST_24483_PI429285431	4.4344	P	3.5932236	P	1.79151037684717	0	lncRNA	26035-1_{1..692}	lnc-HDAC9-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HDAC9-3:1	chr7	 19161404	 19162095	+	lnc-HDAC9-3	lnc-HDAC9-3:1	ENSG00000236536.1	AC003986.7	TWIST1	NA	chr7:19155091-19157295	inter
CUST_277_PI429285431	3.285471	P	2.0226302	A	2.39967794799894	0	lncRNA	269-1_{1..518}	"transcript_id ""ENST00000411721.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411721.1"" | genecode_v17"	chr1	 71716682	 71717199	+	ENSG00000237726.1	ENST00000411721.1	RP11-386O9.2	RP11-386O9.2-001	NA	NA	NA	inter
CUST_36619_PI429285431	4.4938684	P	3.8800807	P	1.53027156591675	0	lncRNA	37813-1_{1..1736}	n345116|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_665|NULL|-1.3011000|-0.1913822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n345116|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_665|NULL|-1.3011000|-0.1913822	chr10	 47589840	 47591575	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23979_PI429285431	0.90402246	A	0.89898264	A	1.00349944583662	0	lncRNA	25534-1_{1..1676}	lnc-SYT16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SYT16-1:1	chr14	 62577593	 62579268	+	lnc-SYT16-1	lnc-SYT16-1:1	ENSG00000259796.1	RP11-355I22.7	SYT16	NA	chr14:62567593-62568427	inter
CUST_15135_PI429285431	6.5083137	P	6.2836137	P	1.16853423343255	0	lncRNA	16796-1_{1..1614}	lnc-TSN-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSN-2:2	chr2	122407877	122409490	+	lnc-TSN-2	lnc-TSN-2:2	XLOC_001646	linc-TSN-1	CLASP1	NA	chr2:122397877-122407052	inter
CUST_45335_PI429285431	4.9410276	P	4.8516345	P	1.06392252692337	0	lncRNA	49774-1_{1..2523}	"gi|375493549|ref|NR_046337.1| Homo sapiens maternal embryonic leucine zipper kinase (MELK), transcript variant 10, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375493549|ref|NR_046337.1| Homo sapiens maternal embryonic leucine zipper kinase (MELK), transcript variant 10, non-coding RNA"	Chr9	 36572859	 36575381	+	9833	NR_046337.1	NA	NA	NA	NA	NA	inter
CUST_42532_PI429285431	0.9223995	A	0.9106293	A	1.00819185204104	0	lncRNA	45328-1_{1..120}	ENST00000515991 ncrna:snoRNA chromosome:GRCh37:3:146671746:146671865:-1 gene:ENSG00000251800 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515991 ncrna:snoRNA chromosome:GRCh37:3:146671746:146671865:-1 gene:ENSG00000251800 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	146671746	146671865	-	ENSG00000251800	ENST00000515991	NA	NA	NA	NA	NA	inter
CUST_15628_PI429285431	6.404124	P	6.8867674	P	0.71566513359981	0	lncRNA	17316-1_{1..202}	lnc-FAM135B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM135B-3:1	chr8	137909226	137909427	-	lnc-FAM135B-3	lnc-FAM135B-3:1	XLOC_007236	linc-ZFAT-5	NA	NA	NA	inter
CUST_20731_PI429285431	0.9209511	A	1.2074419	A	0.819893938586682	0	lncRNA	22365-1_{1..915}	lnc-OPALIN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OPALIN-1:1	chr10	 98135066	 98135980	-	lnc-OPALIN-1	lnc-OPALIN-1:1	ENSG00000251063.1	RP11-35J23.5	TLL2	NA	chr10:98125066-98145109	inner
CUST_30826_PI429285431	1.4859576	A	0.901399	A	1.49958011480968	0	lncRNA	32613-1_{1..434}	n336756|Z77846|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328137|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328137|1.4570200|-0.1291964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336756|Z77846|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328137|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328137|1.4570200|-0.1291964	chr14	 22386430	 22386863	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2900_PI429285431	0.90803903	A	0.9031422	A	1.00339999080902	0	lncRNA	2881-1_{1..538}	"transcript_id ""ENST00000413406.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413406.1"" | genecode_v17"	chr7	108549510	108550047	+	ENSG00000229603.1	ENST00000413406.1	AC004014.3	AC004014.3-001	NA	NA	NA	inter
CUST_2832_PI429285431	7.82733	P	6.923088	P	1.87156090798831	0	lncRNA	2816-1_{1..738}	"transcript_id ""ENST00000441295.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441295.1"" | genecode_v17"	chr7	 52232931	 52233668	-	ENSG00000233960.1	ENST00000441295.1	RP11-153N17.1	RP11-153N17.1-001	NA	NA	NA	inter
CUST_4073_PI429285431	3.6918201	P	3.3253381	A	1.28920527808175	0	lncRNA	4034-1_{1..508}	"transcript_id ""ENST00000603154.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000603154.1"" | genecode_v17"	chr11	110962656	110963163	-	ENSG00000271584.1	ENST00000603154.1	RP11-89C3.4	RP11-89C3.4-001	NA	NA	NA	inter
CUST_41551_PI429285431	6.4711733	P	6.587965	P	0.922236263130961	0	lncRNA	42845-1_{1..85}	ENST00000580608 ncrna:miRNA chromosome:GRCh37:6:74186781:74186865:1 gene:ENSG00000264609 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580608 ncrna:miRNA chromosome:GRCh37:6:74186781:74186865:1 gene:ENSG00000264609 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 74186781	 74186865	+	ENSG00000264609	ENST00000580608	NA	NA	MTO1	NA	chr6:74176781-74196865	inner
LNCA_19_P00330048	4.718694	P	4.829916	P	0.925803550143116	0	lncRNA	TCONS_00020284	NA	NA	NA	NA	XLOC_009628	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009628), lincRNA [TCONS_00020284]"	chr12:5630796-5631072	hs|12p13.31	Agilent_HUMAN_G3V2	TCONS_00020284	TCONS_00020284	chr12	  5630796	  5631072	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25700_PI429285431	0.910454	A	0.9014801	A	1.00623961930987	0	lncRNA	27228-1_{1..602}	lnc-RGS18-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RGS18-6:1	chr1	190331193	190331794	+	lnc-RGS18-6	lnc-RGS18-6:1	ENSG00000225811.1	RP11-547I7.1	FAM5C	"hg19_refFlat_FAM5C:range=chr1:190067148-1904240205'pad=0,hg19_refFlat_FAM5C:range=chr1:190067148-1904240205'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr1:190321193-190341400"	NA	inner
CUST_32885_PI429285431	1.5418046	A	1.6927509	A	0.900659503575296	0	lncRNA	34512-1_{1..2099}	n339551|BC043572|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1993|NULL|-0.6737620|-0.2954289	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339551|BC043572|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1993|NULL|-0.6737620|-0.2954289	chr3	131043935	131046033	-	NA	NA	NA	NA	NEK11	NA	chr3:131033935-131069309	inter
CUST_44758_PI429285431	6.5410156	P	6.730381	P	0.876991399745482	0	lncRNA	49304-1_{1..3000}	"gi|393715084|ref|NR_072998.1| Homo sapiens PTK7 protein tyrosine kinase 7 (PTK7), transcript variant PTK7-5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393715084|ref|NR_072998.1| Homo sapiens PTK7 protein tyrosine kinase 7 (PTK7), transcript variant PTK7-5, non-coding RNA"	Chr6	 43044006	 43047005	+	5754	NR_072998.1	NA	NA	NA	NA	NA	inter
CUST_13684_PI429285431	0.8918407	A	0.930808	A	0.973351435806986	0	lncRNA	15324-1_{1..1394}	lnc-TBX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBX2-1:1	chr17	 59475886	 59477279	+	lnc-TBX2-1	lnc-TBX2-1:1	XLOC_012269	linc-TBX2	BCAS3	NA	chr17:59465886-59470199	inter
CUST_36564_PI429285431	0.9148051	A	0.9263475	A	0.992031337457894	0	lncRNA	37760-1_{1..468}	n345062|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_611|NULL|-1.5070600|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345062|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_611|NULL|-1.5070600|-1.0000000	chr9	137029880	137030347	+	NA	NA	NA	NA	WDR5	NA	chr9:137019880-137025094	inter
CUST_36959_PI429285431	0.8941566	A	0.8997527	A	0.996128592359053	0	lncRNA	38107-2_{3001..6000}	n345423|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_972|NULL|-1.6194600|-0.2538491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n345423|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_972|NULL|-1.6194600|-0.2538491	chr1	207977865	207980864	-	NA	NA	NA	NA	CD46	NA	chr1:207964865-207968861	inter
CUST_40701_PI429285431	0.93027365	A	0.91927135	A	1.00765536685222	0	lncRNA	41440-1_{1..1360}	n410263|NR_037174_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037174_8||-1.1574800|-0.3546184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410263|NR_037174_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037174_8||-1.1574800|-0.3546184	chr6	  4269058	  4270417	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5925_PI429285431	1.1084652	A	0.9149872	A	1.14351714773402	0	lncRNA	5853-1_{1..542}	"transcript_id ""ENST00000592317.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592317.1"" | genecode_v17"	chr17	 58213123	 58213664	-	ENSG00000267095.1	ENST00000592317.1	CTD-2319I12.5	CTD-2319I12.5-001	CA4	NA	chr17:58227302-58227442	inter
CUST_8593_PI429285431	1.4167583	A	0.9074726	A	1.42334530145647	0	lncRNA	10149-1_{1..573}	lnc-ATXN7-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ATXN7-8:2	chr3	 64728918	 64729490	+	lnc-ATXN7-8	lnc-ATXN7-8:2	ENSG00000241684	ADAMTS9-AS2	NA	NA	NA	inter
CUST_17339_PI429285431	3.130046	P	3.4489715	P	0.801666725971335	0	lncRNA	19057-1_{1..320}	lnc-HPDL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HPDL-1:1	chr1	 45683510	 45683829	+	lnc-HPDL-1	lnc-HPDL-1:1	XLOC_000167	linc-HPDL	NA	NA	NA	inter
CUST_38436_PI429285431	3.993099	P	4.401949	P	0.753223543462124	0	lncRNA	39462-3_{6001..7299}	n382643|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002baz.2||1.7861900|-0.1938776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382643|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002baz.2||1.7861900|-0.1938776	chr15	 76031203	 76032501	-	NA	NA	NA	NA	LOC100652820	"hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chr15:76030311-76031568"	NA	inter
CUST_41808_PI429285431	4.252639	P	4.6840696	P	0.74152611120092	0	lncRNA	43398-1_{1..93}	ENST00000578707 ncrna:miRNA chromosome:GRCh37:4:13629489:13629581:1 gene:ENSG00000266240 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578707 ncrna:miRNA chromosome:GRCh37:4:13629489:13629581:1 gene:ENSG00000266240 gene_biotype:miRNA transcript_biotype:miRNA	chr4	 13629489	 13629581	+	ENSG00000266240	ENST00000578707	NA	NA	BOD1L	NA	chr4:13619489-13629328	inter
CUST_41437_PI429285431	0.90886575	A	0.8772994	A	1.02212125187763	0	lncRNA	42608-1_{1..100}	ENST00000516657 ncrna:miRNA chromosome:GRCh37:3:48357850:48357949:-1 gene:ENSG00000252466 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516657 ncrna:miRNA chromosome:GRCh37:3:48357850:48357949:-1 gene:ENSG00000252466 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 48357850	 48357949	-	ENSG00000252466	ENST00000516657	NA	NA	SPINK8	NA	chr3:48348336-48367949	inner
CUST_25643_PI429285431	0.91132545	A	0.9096287	A	1.00117678935247	0	lncRNA	27173-1_{1..502}	lnc-C12orf23-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C12orf23-1:1	chr12	107516769	107517270	+	lnc-C12orf23-1	lnc-C12orf23-1:1	ENSG00000257548.1	RP11-797M17.1	NA	NA	NA	inter
CUST_21238_PI429285431	0.9281795	A	1.9488862	A	0.492874859777427	0	lncRNA	22864-1_{1..207}	lnc-TMCO4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMCO4-1:1	chr1	 19923204	 19923410	-	lnc-TMCO4-1	lnc-TMCO4-1:1	ENSG00000235185.1	RP5-1056L3.1	C1orf15-NBL1	NA	chr1:19923471-19933326	inter
CUST_23357_PI429285431	5.608001	P	6.0786715	P	0.72162913893052	0	lncRNA	24927-1_{1..489}	lnc-PIKFYVE-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PIKFYVE-1:2	chr2	209120627	209121115	+	lnc-PIKFYVE-1	lnc-PIKFYVE-1:2	ENSG00000231908.1	IDH1-AS1	IDH1	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90chr2:209110627-209119806"	NA	inter
CUST_50992_PI429285431	0.91102934	A	0.9324776	A	0.985243164319909	0	lncRNA	54637-1_{1..1648}	hg19_lincRNAsTranscripts_TCONS_l2_00005996 range=chr12:127221209-127230586 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005996 range=chr12:127221209-127230586 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	127221209	127222856	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003934	0.92536974	A	0.9240197	A	1.000936214395	0	lncRNA	AK000840	NA	AK000840	NA	Hs.365692	XLOC_004800	NA	NA	THC2740786	NA	"BROAD Institute lincRNA (XLOC_004800), lincRNA [TCONS_00009276]"	chr5:42156374-42156315	hs|5p13.1	Agilent_HUMAN_G3V2	AK000840	AK000840	chr5	 42156315	 42156374	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37212_PI429285431	0.9125451	A	1.6009364	A	0.620545413339289	0	lncRNA	38325-1_{1..3000}	n345648|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1197|NULL|-1.3146200|-0.3494960	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345648|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1197|NULL|-1.3146200|-0.3494960	chr4	120395770	120398769	+	NA	NA	NA	NA	PDE5A	NA	chr4:120415550-120419872	inter
CUST_29118_PI429285431	0.95854074	A	2.2100308	A	0.420014179908472	0	lncRNA	30853-1_{1..789}	n326618|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021834|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021834|-0.8987210|-0.2289151	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326618|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021834|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021834|-0.8987210|-0.2289151	chr1	 48292467	 48293255	+	NA	NA	NA	NA	LOC388630	NA	chr1:48282467-48315460	inner
CUST_45278_PI429285431	0.92007434	A	0.9122225	A	1.00545731796146	0	lncRNA	49726-1_{1..2263}	"gi|310120273|ref|XR_108893.1| PREDICTED: Homo sapiens uncharacterized LOC100131910 (LOC100131910), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120273|ref|XR_108893.1| PREDICTED: Homo sapiens uncharacterized LOC100131910 (LOC100131910), misc_RNA"	NA	NA	NA	NA	NA	XR_108893.1	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-20.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20"	NA	Unknown
CUST_1639_PI429285431	5.003802	P	5.059901	P	0.961861447956536	0	lncRNA	1624-1_{1..729}	"transcript_id ""ENST00000594715.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594715.1"" | genecode_v17"	chr3	195415453	195416181	+	ENSG00000242086.3	ENST00000594715.1	AC069513.3	AC069513.3-029	NA	NA	NA	inter
CUST_42201_PI429285431	0.9114498	A	0.9050659	A	1.00443478697662	0	lncRNA	44281-1_{1..75}	ENST00000578126 ncrna:miRNA chromosome:GRCh37:4:7312177:7312251:1 gene:ENSG00000264658 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578126 ncrna:miRNA chromosome:GRCh37:4:7312177:7312251:1 gene:ENSG00000264658 gene_biotype:miRNA transcript_biotype:miRNA	chr4	  7312177	  7312251	+	ENSG00000264658	ENST00000578126	NA	NA	SORCS2	NA	chr4:7302177-7322251	inner
CUST_19807_PI429285431	6.4149866	P	6.8055506	P	0.762831328707866	0	lncRNA	21464-1_{1..474}	lnc-ENO3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ENO3-1:1	chr17	  4871816	  4872289	+	lnc-ENO3-1	lnc-ENO3-1:1	ENSG00000262429.1	RP5-1050D4.3	SPAG7	"hg19_refFlat_CAMTA2:range=chr17:4872051-48909245'pad=0,hg19_refFlat_CAMTA2:range=chr17:4872051-48909245'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_CAMTA2:range=chr17:4872051-48895175'pad=0,hg19_refFlat_CAMTA2:range=chr17:4872051-48895175'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_CAMTA2:range=chr17:4872001-48902535'pad=0,hg19_refFlat_CAMTA2:range=chr17:4872001-48902535'pad=0 3'pad=0 strand=- repeatMasking=none,-99.50;hg19_refFlat_CAMTA2:range=chr17:4872051-48902535'pad=0,hg19_refFlat_CAMTA2:range=chr17:4872051-48902535'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50chr17:4862521-4871132"	NA	inner
CUST_43303_PI429285431	1.0900697	A	0.905502	A	1.13647637987382	0	lncRNA	48120-2_{3001..5428}	ENST00000562691 havana:sense_overlapping chromosome:GRCh37:12:14915438:14920865:-1 gene:ENSG00000261324 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000562691 havana:sense_overlapping chromosome:GRCh37:12:14915438:14920865:-1 gene:ENSG00000261324 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	chr12	 14918438	 14920865	-	ENSG00000261324	ENST00000562691	NA	NA	H2AFJ	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.10;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-34.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70chr12:14927270-14930865"	NA	inter
CUST_21182_PI429285431	5.0232224	P	5.6234903	P	0.65963145432412	0	lncRNA	22807-1_{1..449}	lnc-DOCK8-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DOCK8-2:2	chr9	   549107	   549555	+	lnc-DOCK8-2	lnc-DOCK8-2:2	ENSG00000226403.1	RP11-31F19.1	KANK1	NA	chr9:539107-559531	inner
CUST_6520_PI429285431	0.909617	A	0.89340055	A	1.01130379710511	0	lncRNA	6462-1_{1..881}	"transcript_id ""ENST00000597702.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597702.1"" | genecode_v17"	chr19	 41961684	 41962564	-	ENSG00000267107.2	ENST00000597702.1	AC011526.1	AC011526.1-005	NA	NA	NA	inter
CUST_204_PI429285431	3.2906199	P	4.411671	P	0.45975873821525	0	lncRNA	194-1_{1..2741}	"transcript_id ""ENST00000412068.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000412068.1"" | genecode_v17"	chr1	 31984036	 31986776	+	ENSG00000223907.1	ENST00000412068.1	RP11-439L8.4	RP11-439L8.4-001	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80"	NA	inter
LNCA_21_P0004649	0.9234601	A	0.91614544	A	1.00508301084501	0	lncRNA	ENST00000439844	NA	NA	NA	NA	XLOC_005281	NA	ENST00000439844	NA	NA	"BROAD Institute lincRNA (XLOC_005281), lincRNA [TCONS_00011301]"	chr6:38682036-38682862	hs|6p21.2	Agilent_HUMAN_G3V2	ENST00000439844	ENST00000439844	chr6	 38682036	 38682862	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39184_PI429285431	0.90387297	A	0.9107158	A	0.99526814235881	0	lncRNA	40159-1_{1..673}	n385926|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vjs.1||-0.1308290|-0.1009846	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385926|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vjs.1||-0.1308290|-0.1009846	chr1	   995082	   995754	+	NA	NA	NA	NA	AGRN	NA	chr1:985082-991492	inter
LNCA_21_P0010474	0.92254233	A	0.91449744	A	1.00559186928174	0	lncRNA	BC040576	NA	BC040576	NA	Hs.272317	XLOC_014323	NA	NA	THC2624567	NA	"BROAD Institute lincRNA (XLOC_014323), lincRNA [TCONS_00029883]"	chr22:25675979-25675920	hs|22q11.23	Agilent_HUMAN_G3V2	BC040576	BC040576	chr22	 25675920	 25675979	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006284	2.4381459	A	2.8454897	A	0.754010333252953	0	lncRNA	TCONS_00016370	NA	NA	NA	NA	XLOC_007747	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007747), lincRNA [TCONS_00016370]"	chr9:82132765-82132706	hs|9q21.31	Agilent_HUMAN_G3V2	TCONS_00016370	TCONS_00016370	chr9	 82132706	 82132765	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17239_PI429285431	3.2703922	A	3.6146705	P	0.787701921438865	0	lncRNA	18957-1_{1..1329}	lnc-CD47-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD47-2:5	chr3	107596749	107598077	-	lnc-CD47-2	lnc-CD47-2:5	XLOC_003208	linc-CBLB-9	NA	NA	NA	inter
CUST_35212_PI429285431	4.40927	P	4.3075542	P	1.0730488830661	0	lncRNA	36612-1_{1..1358}	n342198|CR608080|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4688|NULL|-1.2250000|-0.3979325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342198|CR608080|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4688|NULL|-1.2250000|-0.3979325	chrX	  5808100	  5809457	-	NA	NA	NA	NA	NLGN4X	NA	chrX:5808083-5819458	inner
CUST_24760_PI429285431	1.0775616	A	2.433569	A	0.390661936262994	0	lncRNA	26304-1_{1..1065}	lnc-SGSM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SGSM2-1:1	chr17	  2289394	  2290458	+	lnc-SGSM2-1	lnc-SGSM2-1:1	ENSG00000262456.1	RP1-59D14.1	MNT	NA	chr17:2287354-2299958	inner
CUST_50146_PI429285431	0.8902641	A	0.8887588	A	1.00104393897626	0	lncRNA	53871-1_{1..847}	hg19_lincRNAsTranscripts_TCONS_l2_00029163 range=chr9:111429-113576 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029163 range=chr9:111429-113576 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	   111429	   112275	-	NA	NA	NA	NA	CBWD1	NA	chr9:121038-123576	inter
CUST_20354_PI429285431	0.91801906	A	1.553598	A	0.643682459181808	0	lncRNA	21995-2_{3001..4701}	lnc-C14orf109-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C14orf109-1:1	chr14	 93536797	 93538497	+	lnc-C14orf109-1	lnc-C14orf109-1:1	ENSG00000258730.1	ITPK1-AS1	ITPK1	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60chr14:93523797-93548497"	NA	inner
LNCA_21_P0006843	0.9174036	A	1.3597414	A	0.735941093894949	0	lncRNA	TCONS_00018141	NA	NA	NA	NA	XLOC_008417	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008417), lincRNA [TCONS_00018141]"	chr10:26153229-26153288	hs|10p12.1	Agilent_HUMAN_G3V2	TCONS_00018141	TCONS_00018141	chr10	 26153229	 26153288	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14196_PI429285431	0.9049355	A	0.9739123	A	0.953313875419235	0	lncRNA	15848-1_{1..1003}	lnc-LAMA4-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LAMA4-1:4	chr6	112717479	112718481	-	lnc-LAMA4-1	lnc-LAMA4-1:4	XLOC_005807	linc-LAMA4-1	NA	NA	NA	inter
CUST_29981_PI429285431	10.433248	P	10.484715	P	0.964954618758838	0	lncRNA	31747-1_{1..215}	n334247|S66407|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216124|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216124|-0.1539420|-0.0607321	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334247|S66407|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216124|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216124|-0.1539420|-0.0607321	chr5	180030192	180030406	-	NA	NA	NA	NA	FLT4	NA	chr5:180028506-180040407	inner
CUST_12040_PI429285431	6.598249	P	6.1184745	P	1.39452567841181	0	lncRNA	13625-1_{1..588}	lnc-NUF2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUF2-2:1	chr1	163394794	163395381	+	lnc-NUF2-2	lnc-NUF2-2:1	XLOC_000447	linc-PBX1	NA	NA	NA	inter
CUST_19977_PI429285431	1.4219898	A	0.89022416	A	1.44569742774403	0	lncRNA	21630-1_{1..407}	lnc-FAM43A-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FAM43A-3:2	chr3	194430744	194431150	+	lnc-FAM43A-3	lnc-FAM43A-3:2	ENSG00000237222.2	AC090505.6	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30"	NA	inter
CUST_12518_PI429285431	3.6311615	P	3.6106384	P	1.01432719324193	0	lncRNA	14129-1_{1..532}	lnc-RP11-368J21.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-368J21.2.1-1:1	chr16	 22447008	 22447539	+	lnc-RP11-368J21.2.1-1	lnc-RP11-368J21.2.1-1:1	XLOC_011670	linc-LOC100132247	NA	NA	NA	inter
CUST_5971_PI429285431	0.9225074	A	0.9163942	A	1.00424633759424	0	lncRNA	5900-1_{1..3000}	"transcript_id ""ENST00000569279.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569279.1"" | genecode_v17"	chr17	 72599876	 72602875	+	ENSG00000261222.2	ENST00000569279.1	CTD-2006K23.1	CTD-2006K23.1-001	CD300E	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90chr17:72606022-72613368"	NA	inter
CUST_34843_PI429285431	0.8979792	A	0.89295006	A	1.00349201714649	0	lncRNA	36271-1_{1..3000}	n341747|AK127575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4220|NULL|0.1028620|-0.4106129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341747|AK127575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4220|NULL|0.1028620|-0.4106129	chr9	108530806	108533805	+	NA	NA	NA	NA	TMEM38B	NA	chr9:108520806-108537444	inner
CUST_11830_PI429285431	8.64044	P	8.516178	P	1.08995003413882	0	lncRNA	13412-1_{1..648}	lnc-GLRX3-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLRX3-3:2	chr10	132050171	132050818	+	lnc-GLRX3-3	lnc-GLRX3-3:2	XLOC_008668	linc-PPP2R2D-4	NA	NA	NA	inter
CUST_36610_PI429285431	4.576969	P	4.8957024	P	0.801773477867603	0	lncRNA	37803-1_{1..1019}	n345106|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_655|NULL|-1.5639500|-0.3218546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345106|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_655|NULL|-1.5639500|-0.3218546	chr10	  6625640	  6626658	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8538_PI429285431	0.9090897	A	0.8984804	A	1.00738091201934	0	lncRNA	10097-1_{1..892}	lnc-MKKS-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MKKS-3:1	chr20	 10349363	 10350254	-	lnc-MKKS-3	lnc-MKKS-3:1	ENSG00000227906	RP5-839B4.7	NA	NA	NA	inter
CUST_16370_PI429285431	4.601688	P	4.963361	P	0.778261556651404	0	lncRNA	18067-1_{1..497}	lnc-ZNF74-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF74-1:4	chr22	 20853528	 20854024	+	lnc-ZNF74-1	lnc-ZNF74-1:4	XLOC_014159	linc-MED15	KLHL22	NA	chr22:20843528-20850170	inter
CUST_9349_PI429285431	5.205843	P	2.6959682	A	5.69570647598692	0	lncRNA	10853-3_{6001..6644}	lnc-HMBOX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HMBOX1-1:1	chr8	 28927912	 28928555	+	lnc-HMBOX1-1	lnc-HMBOX1-1:1	XLOC_006753	linc-LEPROTL1-6	KIF13B	NA	chr8:28924795-28932437	inter
CUST_28677_PI429285431	0.89907765	A	0.89144367	A	1.00530549627584	0	lncRNA	30373-1_{1..1044}	n326060|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046746|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046746|-1.0457000|-0.4096439	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326060|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046746|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046746|-1.0457000|-0.4096439	chr10	 11016908	 11017951	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28014_PI429285431	1.038519	A	1.0603592	A	0.984975537589591	0	lncRNA	29624-1_{1..567}	n325270|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328269|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328269|-1.1833400|-0.2926184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325270|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328269|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328269|-1.1833400|-0.2926184	chr2	 67121181	 67121747	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29260_PI429285431	5.2843637	P	5.9409575	P	0.634374286651324	0	lncRNA	31011-1_{1..229}	n332358|EU789555|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558073|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558073|-0.1269770|-0.0478570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332358|EU789555|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558073|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558073|-0.1269770|-0.0478570	chr3	 10334870	 10335098	-	NA	NA	NA	NA	SEC13	NA	chr3:10342615-10355789	inter
LNCA_21_P0002311	0.91025746	A	0.8985856	A	1.00812313189928	0	lncRNA	TCONS_00003929	NA	NA	NA	NA	XLOC_001741	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001741), lincRNA [TCONS_00003929]"	chr2:166938143-166938202	hs|2q24.3	Agilent_HUMAN_G3V2	TCONS_00003929	TCONS_00003929	chr2	166938143	166938202	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26891_PI429285431	0.8918414	A	0.8869834	A	1.00337298475701	0	lncRNA	28409-1_{1..3000}	n323967|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054410|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054410|0.2331470|-0.2932716	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323967|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054410|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054410|0.2331470|-0.2932716	chr9	129913270	129916269	-	NA	NA	NA	NA	RALGPS1	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20chr9:129903270-129930793"	NA	inner
CUST_35722_PI429285431	4.5447235	P	4.7531767	P	0.86546465067886	0	lncRNA	37140-1_{1..2206}	n342888|AK097853|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5395|NULL|-1.0818300|-0.2037431	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n342888|AK097853|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5395|NULL|-1.0818300|-0.2037431	chr6	 43808374	 43810579	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31315_PI429285431	2.7666843	A	1.5050417	A	2.39768577338212	0	lncRNA	33098-1_{1..2460}	n337781|BC043169|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|163|NULL|-0.7758020|-0.2019904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337781|BC043169|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|163|NULL|-0.7758020|-0.2019904	chr1	 25294548	 25297007	-	NA	NA	NA	NA	RUNX3	NA	chr1:25284548-25291501	inter
CUST_50843_PI429285431	3.357934	P	5.5053024	P	0.225723980335906	0	lncRNA	54488-1_{1..1571}	hg19_lincRNAsTranscripts_TCONS_l2_00004591 range=chr11:66176955-66184448 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004591 range=chr11:66176955-66184448 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 66176955	 66178525	+	NA	NA	NA	NA	NPAS4	NA	chr11:66188475-66194177	inter
CUST_38701_PI429285431	4.8137097	P	4.7099524	P	1.07456838642607	0	lncRNA	39696-1_{1..2195}	n384109|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zwz.3||2.3243900|-0.1489402	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384109|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zwz.3||2.3243900|-0.1489402	chr22	 23732792	 23734986	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40"	NA	inter
LNCA_21_P0004545	0.91009986	A	0.89839315	A	1.00814748459649	0	lncRNA	TCONS_00010854	NA	NA	NA	NA	XLOC_004671	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004671), lincRNA [TCONS_00010854]"	chr5:177485951-177490201	hs|5q35.3	Agilent_HUMAN_G3V2	TCONS_00010854	TCONS_00010854	chr5	177485951	177490201	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10536_PI429285431	1.0682707	A	0.91753715	A	1.11013378512192	0	lncRNA	12065-1_{1..460}	lnc-ZBTB7C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZBTB7C-1:1	chr18	 45518342	 45518801	-	lnc-ZBTB7C-1	lnc-ZBTB7C-1:1	XLOC_012840	linc-SMAD2	NA	NA	NA	inter
CUST_9101_PI429285431	0.8952646	A	0.89160955	A	1.00253669959396	0	lncRNA	10623-1_{1..466}	lnc-GPR55-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR55-1:10	chr2	231860563	231861028	-	lnc-GPR55-1	lnc-GPR55-1:10	ENSG00000238062	XLOC_002517	SPATA3	NA	chr2:231860839-231870596	inter
CUST_23495_PI429285431	5.7529216	P	5.7831087	P	0.979293286922593	0	lncRNA	25062-1_{1..338}	lnc-TPSG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TPSG1-1:1	chr16	  1257017	  1257354	-	lnc-TPSG1-1	lnc-TPSG1-1:1	ENSG00000261294.1	RP11-616M22.3	CACNA1H	"hg19_refFlat_CACNA1H:range=chr16:1203738-12709945'pad=0,hg19_refFlat_CACNA1H:range=chr16:1203738-12709945'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CACNA1I:range=chr22:39966758-400824105'pad=0,hg19_refFlat_CACNA1I:range=chr22:39966758-400824105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80chr16:1247017-1267124"	NA	inner
LNCA_19_P00321206	3.7478747	P	2.3987303	A	2.54760992932389	0	lncRNA	ENST00000440326	NA	NA	NA	NA	XLOC_001826	NA	ENST00000440326	THC2778533	NA	"BROAD Institute lincRNA (XLOC_001826), lincRNA [TCONS_00003087]"	chr2:208104820-208104879	hs|2q33.3	Agilent_HUMAN_G3V2	ENST00000440326	ENST00000440326	chr2	208104820	208104879	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44249_PI429285431	0.9204205	A	0.9013823	A	1.01328372975573	0	lncRNA	48895-1_{1..542}	"gi|310119282|ref|XR_108490.1| PREDICTED: Homo sapiens uncharacterized LOC100507224 (LOC100507224), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119282|ref|XR_108490.1| PREDICTED: Homo sapiens uncharacterized LOC100507224 (LOC100507224), misc_RNA"	NA	NA	NA	NA	NA	XR_108490.1	NA	NA	NA	NA	NA	Unknown
CUST_18739_PI429285431	1.2607893	A	2.2979398	A	0.487288979465424	0	lncRNA	20436-1_{1..1345}	lnc-RP11-82I10.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RP11-82I10.1.1-1:2	chr15	 98417183	 98418527	-	lnc-RP11-82I10.1.1-1	lnc-RP11-82I10.1.1-1:2	ENSG00000251209	AC024651.1	NA	NA	NA	inter
CUST_37022_PI429285431	0.9112631	A	0.90060574	A	1.00741447110957	0	lncRNA	38160-1_{1..696}	n345477|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1026|NULL|-1.3391100|-0.4204870	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345477|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1026|NULL|-1.3391100|-0.4204870	chr1	181065773	181066468	-	NA	NA	NA	NA	IER5	NA	chr1:181057638-181059979	inter
CUST_18868_PI429285431	3.3791487	P	3.3408403	P	1.02690904110323	0	lncRNA	20561-1_{1..547}	lnc-MAGEA8-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MAGEA8-2:2	chrX	149108877	149109423	+	lnc-MAGEA8-2	lnc-MAGEA8-2:2	ENSG00000235703	RP13-507I23.1	CXorf40B	NA	chrX:149100415-149106716	inter
CUST_34500_PI429285431	5.3909044	P	5.6358776	P	0.843831471288483	0	lncRNA	35967-1_{1..460}	n341378|AF107459|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3847|NULL|-1.0933400|-0.2133345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341378|AF107459|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3847|NULL|-1.0933400|-0.2133345	chr7	157031955	157032414	-	NA	NA	NA	NA	UBE3C	NA	chr7:157021955-157042394	inner
CUST_17920_PI429285431	0.90380716	A	0.885687	A	1.01263914509974	0	lncRNA	19652-1_{1..2499}	lnc-SRD5A1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRD5A1-1:9	chr5	  6586460	  6588958	+	lnc-SRD5A1-1	lnc-SRD5A1-1:9	XLOC_004271	linc-SRD5A1	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.91;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30"	NA	inter
LNCA_21_P0011968	9.247982	P	9.519259	P	0.828585799274998	0	lncRNA	TCONS_l2_00014908	NA	NA	NA	NA	XLOC_l2_008270	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008270), lincRNA [TCONS_l2_00014908]"	chr2:132384604-132384486	hs|2q21.1	Agilent_HUMAN_G3V2	TCONS_l2_00014908	TCONS_l2_00014908	chr2	132384486	132384604	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40457_PI429285431	0.9138744	A	1.2907751	A	0.770090177345397	0	lncRNA	41230-1_{1..1429}	n409374|NR_033754|lncRNA|Homosapiens||RefGeneNoncode|NR_033754||1.4260400|-0.2848426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409374|NR_033754|lncRNA|Homosapiens||RefGeneNoncode|NR_033754||1.4260400|-0.2848426	chr18	  2652168	  2653596	-	NA	NA	NA	NA	SMCHD1	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40chr18:2655886-2665394"	NA	inter
CUST_36442_PI429285431	2.4334776	A	2.2729888	A	1.11766575064473	0	lncRNA	37656-1_{1..2166}	n344956|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_505|NULL|-1.4285500|-0.4161185	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344956|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_505|NULL|-1.4285500|-0.4161185	chr7	 63364989	 63367154	+	NA	NA	NA	NA	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.40;hg19_refFlat_NMD3:range=chr3:160939802-1609686985'pad=0,hg19_refFlat_NMD3:range=chr3:160939802-1609686985'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70"	NA	inter
CUST_46882_PI429285431	3.0479536	A	4.707472	P	0.316544799741794	0	lncRNA	51006-3_{6001..7813}	"gi|373838811|ref|NR_046058.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 34, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373838811|ref|NR_046058.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 34, non-coding RNA"	Chr17	 48644429	 48646241	+	8913	NR_046058.1	NA	NA	NA	NA	NA	inter
CUST_46477_PI429285431	2.4613528	A	3.4410038	P	0.507102397370832	0	lncRNA	50674-2_{3001..3567}	"gi|310123316|ref|XR_109205.1| PREDICTED: Homo sapiens uncharacterized LOC100128979 (LOC100128979), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310123316|ref|XR_109205.1| PREDICTED: Homo sapiens uncharacterized LOC100128979 (LOC100128979), misc_RNA"	NA	NA	NA	NA	NA	XR_109205.1	NA	NA	NA	"hg19_refFlat_TPM1:range=chr15:63340775-633621425'pad=0,hg19_refFlat_TPM1:range=chr15:63340775-633621425'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.90"	NA	Unknown
CUST_3415_PI429285431	1.0847068	A	0.9114436	A	1.12760610971077	0	lncRNA	3387-1_{1..931}	"transcript_id ""ENST00000443347.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443347.1"" | genecode_v17"	chr9	 45108392	 45109322	+	ENSG00000231527.1	ENST00000443347.1	RP11-374M1.2	RP11-374M1.2-001	NA	NA	NA	inter
LNCA_21_P0008218	0.9190944	A	0.9072953	A	1.00821204829564	0	lncRNA	TCONS_00022119	NA	NA	NA	NA	XLOC_010729	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010729), lincRNA [TCONS_00022119]"	chr13:112834954-112834895	hs|13q34	Agilent_HUMAN_G3V2	TCONS_00022119	TCONS_00022119	chr13	112834895	112834954	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36472_PI429285431	0.9034917	A	0.9075402	A	0.997197727356105	0	lncRNA	37679-2_{3001..6000}	n344979|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_528|NULL|-1.4060700|-0.2391732	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344979|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_528|NULL|-1.4060700|-0.2391732	chr8	 61825244	 61828243	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NASP:range=chr1:46049819-460838135'pad=0,hg19_refFlat_NASP:range=chr1:46049819-460838135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60"	NA	inter
LNCA_21_P0008630	0.9204367	A	0.9086623	A	1.00819478711174	0	lncRNA	TCONS_00023390	NA	NA	NA	NA	XLOC_011238	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011238), lincRNA [TCONS_00023390]"	chr15:48341627-48341686	hs|15q21.1	Agilent_HUMAN_G3V2	TCONS_00023390	TCONS_00023390	chr15	 48341627	 48341686	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43491_PI429285431	6.934903	P	7.2758393	P	0.789528746369043	0	lncRNA	48284-1_{1..3000}	"gi|384551675|ref|NR_047583.1| Homo sapiens interleukin 12 receptor, beta 2 (IL12RB2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384551675|ref|NR_047583.1| Homo sapiens interleukin 12 receptor, beta 2 (IL12RB2), transcript variant 5, non-coding RNA"	Chr1	 67773047	 67776046	+	3595	NR_047583.1	NA	NA	NA	NA	NA	inter
CUST_14521_PI429285431	1.2326216	A	0.9821685	A	1.18958066197639	0	lncRNA	16188-1_{1..554}	lnc-RP11-80A15.1.1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-80A15.1.1-5:2	chr14	 25719262	 25719815	+	lnc-RP11-80A15.1.1-5	lnc-RP11-80A15.1.1-5:2	XLOC_010775	linc-FOXG1-6	NA	NA	NA	inter
CUST_32528_PI429285431	7.7029653	P	7.9207563	P	0.859881046262095	0	lncRNA	34195-1_{1..710}	n339136|BC035740|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1566|NULL|-0.7019470|-0.1793282	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339136|BC035740|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1566|NULL|-0.7019470|-0.1793282	chr2	217469493	217470202	+	NA	NA	NA	NA	IGFBP2	"hg19_refFlat_PSMB3:range=chr17:36909080-369204205'pad=0,hg19_refFlat_PSMB3:range=chr17:36909080-369204205'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.90chr2:217474994-217485925"	NA	inter
CUST_21557_PI429285431	1.1353269	A	1.216058	A	0.945578344099573	0	lncRNA	23173-1_{1..2315}	lnc-ANXA13-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ANXA13-2:1	chr8	125052867	125055181	-	lnc-ANXA13-2	lnc-ANXA13-2:1	ENSG00000181171.5	FER1L6-AS1	FER1L6	NA	chr8:125042867-125063023	inter
CUST_20245_PI429285431	7.285272	P	7.1916757	P	1.06702671709284	0	lncRNA	21888-1_{1..1388}	lnc-ATP5I-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ATP5I-1:1	chr4	   648871	   650258	-	lnc-ATP5I-1	lnc-ATP5I-1:1	ENSG00000242686.1	RP11-1191J2.2	PDE6B	"hg19_refFlat_PDE6B:range=chr4:619416-6638965'pad=0,hg19_refFlat_PDE6B:range=chr4:619416-6638965'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.70;hg19_refFlat_PDE6B:range=chr4:647767-6638965'pad=0,hg19_refFlat_PDE6B:range=chr4:647767-6638965'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.70chr4:638871-659434"	NA	inner
CUST_6942_PI429285431	1.4102322	A	0.8929237	A	1.431282546901	0	lncRNA	6891-1_{1..327}	"transcript_id ""ENST00000411581.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411581.1"" | genecode_v17"	chr22	 21676430	 21676756	-	ENSG00000206142.5	ENST00000411581.1	FAM230C	FAM230C-008	RIMBP3B	NA	chr22:21666430-21687224	inter
CUST_14970_PI429285431	0.9045654	A	0.8976725	A	1.0047892260587	0	lncRNA	16632-1_{1..1156}	lnc-FAM209B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM209B-1:2	chr20	 55129744	 55130899	+	lnc-FAM209B-1	lnc-FAM209B-1:2	XLOC_013577	linc-TFAP2C-3	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80"	NA	inter
CUST_26710_PI429285431	4.4155636	P	4.936258	P	0.697036253953827	0	lncRNA	28206-2_{3001..4724}	n1834|AF400486|UBE3AantisenseRNA|Homosapiens|UBE3AantisenseRNA|NONCODEv2.0|n1834|NULL|-1.5906100|-0.1725533	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n1834|AF400486|UBE3AantisenseRNA|Homosapiens|UBE3AantisenseRNA|NONCODEv2.0|n1834|NULL|-1.5906100|-0.1725533	chr15	 25302013	 25303736	+	NA	NA	NA	NA	SNRPN	NA	chr15:25289013-25370804	inter
CUST_46124_PI429285431	6.833811	P	6.576052	P	1.19562005359192	0	lncRNA	50383-2_{3001..6000}	"gi|238814329|ref|NR_027752.1| Homo sapiens aldehyde dehydrogenase 1 family, member L2 (ALDH1L2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|238814329|ref|NR_027752.1| Homo sapiens aldehyde dehydrogenase 1 family, member L2 (ALDH1L2), transcript variant 2, non-coding RNA"	Chr12	105416562	105419561	-	160428	NR_027752.1	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70"	NA	inter
CUST_3599_PI429285431	1.5530586	A	1.4191415	A	1.09726888461138	0	lncRNA	3569-1_{1..691}	"transcript_id ""ENST00000420082.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420082.1"" | genecode_v17"	chr10	  4457497	  4458187	-	ENSG00000230096.1	ENST00000420082.1	RP11-34C15.2	RP11-34C15.2-001	NA	NA	NA	inter
CUST_34927_PI429285431	2.259045	A	2.0153248	A	1.18404195343148	0	lncRNA	36347-1_{1..361}	n341844|AF264623|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4324|NULL|-1.1826600|-0.4256533	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341844|AF264623|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4324|NULL|-1.1826600|-0.4256533	chr12	 15321967	 15322327	-	NA	NA	NA	NA	RERG	NA	chr12:15311967-15332304	inner
LNCA_21_P0009911	0.93020254	A	0.9173944	A	1.00891745179746	0	lncRNA	ENST00000416237	NA	NA	NA	NA	XLOC_013797	NA	ENST00000416237	NA	NA	"BROAD Institute lincRNA (XLOC_013797), lincRNA [TCONS_00028066]"	chr20:51104523-51104464	hs|20q13.2	Agilent_HUMAN_G3V2	ENST00000416237	ENST00000416237	chr20	 51104464	 51104523	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46412_PI429285431	12.859909	P	13.312039	P	0.730962854802897	0	lncRNA	50626-1_{1..2000}	"gi|399498573|ref|NR_073084.1| Homo sapiens cysteine-rich protein 2 (CRIP2), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|399498573|ref|NR_073084.1| Homo sapiens cysteine-rich protein 2 (CRIP2), transcript variant 7, non-coding RNA"	NW_004166863.1	   139026	   141025	+	1397	NR_073084.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014742	2.6512187	A	2.063379	A	1.50299446882794	0	lncRNA	XR_132472	XR_132472	XR_132472	NA	Hs.283928	LOC100287813	uncharacterized LOC100287813	NA	THC2634271	NA	"PREDICTED: Homo sapiens hypothetical LOC100287813 (LOC100287813), miscRNA [XR_132472]"	chr1:169459009-169459068	hs|1q24.2	Agilent_HUMAN_G3V2	XR_132472	XR_132472	chr1	169459009	169459068	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31017_PI429285431	3.6088681	P	1.5779905	A	4.08653360967311	0	lncRNA	32806-1_{1..227}	n337220|BC113079|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386780|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386780|-0.9375530|-0.3370893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337220|BC113079|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386780|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386780|-0.9375530|-0.3370893	chr2	167055016	167055242	-	NA	NA	NA	NA	SCN9A	NA	chr2:167051695-167065243	inner
CUST_36385_PI429285431	2.9277716	A	3.7100644	P	0.58144200311192	0	lncRNA	37603-1_{1..1330}	n344902|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_451|NULL|-1.4787400|-0.2745251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344902|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_451|NULL|-1.4787400|-0.2745251	chr6	 45543768	 45545097	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014290	0.94353354	A	0.91801625	A	1.0178445831064	0	lncRNA	XR_109174	XR_109174	XR_109174	NA	NA	LOC100507480	uncharacterized LOC100507480	NA	THC2655663	NA	"PREDICTED: Homo sapiens hypothetical LOC100507480 (LOC100507480), miscRNA [XR_109174]"	chr15:36341657-36341716	hs|15q14	Agilent_HUMAN_G3V2	XR_109174	XR_109174	chr15	 36341657	 36341716	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16989_PI429285431	7.005651	P	7.3007708	P	0.815004652395025	0	lncRNA	18699-1_{1..336}	lnc-ADAMTS7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAMTS7-1:1	chr15	 79019910	 79020245	-	lnc-ADAMTS7-1	lnc-ADAMTS7-1:1	XLOC_011540	linc-CHRNB4	NA	NA	NA	inter
CUST_42688_PI429285431	1.7967694	A	1.5615745	A	1.17706574145126	0	lncRNA	45609-1_{1..118}	ENST00000516831 ncrna:snoRNA chromosome:GRCh37:16:68664754:68664871:-1 gene:ENSG00000252640 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516831 ncrna:snoRNA chromosome:GRCh37:16:68664754:68664871:-1 gene:ENSG00000252640 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 68664754	 68664871	-	ENSG00000252640	ENST00000516831	NA	NA	NA	NA	NA	inter
CUST_75_PI429201921	4.421274	P	4.619529	P	0.871604167678463	0	lncRNA	77-1_{1..2311}	TC04002057.hg.1	TCONS_l2_00020564-XLOC_l2_010704 // Broad TUCP // linc-CSN1S1-3 chr4:+:70265426-70267738 // chr4 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr4:+:70265426-70267738	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00020564-XLOC_l2_010704	linc-CSN1S1-3	chr4	 70265426	 70267738	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51091_PI429285431	0.8884088	A	1.2977725	A	0.752955391119255	0	lncRNA	54729-1_{1..599}	hg19_lincRNAsTranscripts_TCONS_l2_00007227 range=chr13:63305873-63306867 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007227 range=chr13:63305873-63306867 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 63305873	 63306471	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42836_PI429285431	0.9151544	A	0.9239403	A	0.993928584174436	0	lncRNA	45875-1_{1..117}	ENST00000516240 ncrna:snoRNA chromosome:GRCh37:10:23455914:23456030:1 gene:ENSG00000252049 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516240 ncrna:snoRNA chromosome:GRCh37:10:23455914:23456030:1 gene:ENSG00000252049 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	 23455914	 23456030	+	ENSG00000252049	ENST00000516240	NA	NA	NA	NA	NA	inter
CUST_34630_PI429285431	0.90245754	A	0.901544	A	1.00063341819996	0	lncRNA	36083-1_{1..1667}	n341522|BC030256|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3992|NULL|-1.1706100|-0.2192229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341522|BC030256|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3992|NULL|-1.1706100|-0.2192229	chr8	 68256068	 68257734	+	NA	NA	NA	NA	ARFGEF1	NA	chr8:68246068-68255912	inner
CUST_14619_PI429285431	0.9183885	A	0.9086429	A	1.00677800255016	0	lncRNA	16290-1_{1..712}	lnc-FOXG1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXG1-3:3	chr14	 27349576	 27350287	+	lnc-FOXG1-3	lnc-FOXG1-3:3	XLOC_010779	linc-FOXG1-2	NA	NA	NA	inter
CUST_2519_PI429285431	0.9143062	A	0.9079454	A	1.00441870439702	0	lncRNA	2507-1_{1..1230}	"transcript_id ""ENST00000586413.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586413.1"" | genecode_v17"	chr6	 34249692	 34250921	+	ENSG00000225339.2	ENST00000586413.1	RP11-513I15.6	RP11-513I15.6-002	NUDT3	NA	chr6:34254971-34262231	inter
CUST_338_PI429201921	1.853419	A	2.7934926	A	0.521206290073759	0	lncRNA	223-2_{3001..6000}	TC15002461.hg.1	TCONS_l2_00008970-XLOC_l2_004860 // Broad TUCP // linc-CHRFAM7A-2 chr15:-:30704540-30712576 // chr15 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr15:-:30704540-30712576	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00008970-XLOC_l2_004860	linc-CHRFAM7A-2	chr15	 30704540	 30712576	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014527	1.1123203	A	2.2913034	A	0.441662699430037	0	lncRNA	XR_110212	XR_110212	XR_110212	NA	NA	LOC100287612	uncharacterized LOC100287612	NA	THC2690233	NA	"PREDICTED: Homo sapiens hypothetical LOC100287612 (LOC100287612), miscRNA [XR_110212]"	chr6:113108265-113108324	hs|6q21	Agilent_HUMAN_G3V2	XR_110212	XR_110212	chr6	113108265	113108324	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16239_PI429285431	1.5032673	A	0.97255826	A	1.44463901648457	0	lncRNA	17946-1_{1..292}	lnc-DAAM1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DAAM1-2:1	chr14	 59590842	 59591133	+	lnc-DAAM1-2	lnc-DAAM1-2:1	XLOC_010846	linc-DAAM1-2	NA	NA	NA	inter
CUST_34976_PI429285431	0.89055216	A	0.8948847	A	0.997001416872238	0	lncRNA	36393-1_{1..641}	n341901|BC039429|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4382|NULL|3.4150800|-0.1687969	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341901|BC039429|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4382|NULL|3.4150800|-0.1687969	chr12	 46765245	 46765885	+	NA	NA	NA	NA	SLC38A2	NA	chr12:46755245-46766645	inner
CUST_48564_PI429285431	0.90875936	A	0.9834844	A	0.94952307117106	0	lncRNA	52412-1_{1..1706}	hg19_lincRNAsTranscripts_TCONS_l2_00014291 range=chr2:232250256-232259694 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014291 range=chr2:232250256-232259694 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	232250256	232251961	+	NA	NA	NA	NA	B3GNT7	NA	chr2:232260335-232265875	inter
LNCA_21_P0001332	0.9240442	A	0.9248237	A	0.999459837712958	0	lncRNA	TCONS_00001015	NA	NA	NA	NA	XLOC_000281	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000281), lincRNA [TCONS_00001015]"	chr1:88931494-88931553	hs|1p22.2	Agilent_HUMAN_G3V2	TCONS_00001015	TCONS_00001015	chr1	 88931494	 88931553	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50766_PI429285431	5.83506	P	6.149951	P	0.803911726425718	0	lncRNA	54428-3_{6001..6545}	hg19_lincRNAsTranscripts_TCONS_l2_00004567 range=chr11:65266197-65273969 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004567 range=chr11:65266197-65273969 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65272197	 65272741	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45371_PI429285431	0.91929376	A	0.9293674	A	0.993041805954582	0	lncRNA	49806-1_{1..3000}	"gi|334848109|ref|NR_037638.2| Homo sapiens solute carrier family 28 (sodium-coupled nucleoside transporter), member 3 (SLC28A3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|334848109|ref|NR_037638.2| Homo sapiens solute carrier family 28 (sodium-coupled nucleoside transporter), member 3 (SLC28A3), transcript variant 3, non-coding RNA"	Chr9	 86890765	 86893764	-	64078	NR_037638.2	NA	NA	NA	NA	NA	inter
CUST_34340_PI429285431	1.317965	A	0.9064582	A	1.33007426391016	0	lncRNA	35833-1_{1..3000}	n341209|AK022806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3677|NULL|-0.8678960|-0.3574156	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341209|AK022806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3677|NULL|-0.8678960|-0.3574156	chr7	 26537615	 26540614	+	NA	NA	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40"	NA	inter
CUST_36995_PI429285431	0.91300833	A	0.9217956	A	0.993927640328734	0	lncRNA	38138-1_{1..1909}	n345454|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1003|NULL|-1.3238100|-0.3728249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345454|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1003|NULL|-1.3238100|-0.3728249	chr1	112004683	112006591	-	NA	NA	NA	NA	C1orf162	NA	chr1:112016604-112021134	inter
CUST_25710_PI429285431	0.9151107	A	0.9188815	A	0.997389693402059	0	lncRNA	27238-1_{1..706}	lnc-CHD9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CHD9-1:1	chr16	 53483405	 53484110	+	lnc-CHD9-1	lnc-CHD9-1:1	ENSG00000259926.1	RP11-44F14.5	RBL2	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20chr16:53473405-53493502"	NA	inner
CUST_31079_PI429285431	7.6013927	P	9.380863	P	0.291290327160047	0	lncRNA	32870-1_{1..212}	n337323|DQ399598|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391884|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391884|0.6742410|-0.2123188	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337323|DQ399598|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391884|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391884|0.6742410|-0.2123188	chr11	102713503	102713714	-	NA	NA	NA	NA	MMP3	NA	chr11:102706528-102714342	inner
CUST_15759_PI429285431	1.5442309	A	0.8987409	A	1.56427048818528	0	lncRNA	17447-1_{1..328}	lnc-ERI1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERI1-2:4	chr8	  9013662	  9013989	+	lnc-ERI1-2	lnc-ERI1-2:4	XLOC_006704	linc-TNKS-3	PPP1R3B	NA	chr8:9003662-9009152	inter
CUST_31764_PI429285431	5.692301	P	5.2258816	P	1.38167605118484	0	lncRNA	33505-1_{1..3000}	n338305|BX648637|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|699|NULL|0.1805560|-0.1793225	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338305|BX648637|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|699|NULL|0.1805560|-0.1793225	chr19	 10396476	 10399475	-	NA	NA	NA	NA	ICAM5	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ICAM4:range=chr19:10397689-103987805'pad=0,hg19_refFlat_ICAM4:range=chr19:10397689-103987805'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ICAM4:range=chr19:10397689-103985315'pad=0,hg19_refFlat_ICAM4:range=chr19:10397689-103985315'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ICAM4:range=chr19:10397689-103988605'pad=0,hg19_refFlat_ICAM4:range=chr19:10397689-103988605'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90chr19:10400655-10407454"	NA	inner
CUST_17792_PI429285431	2.1519904	A	3.1831312	P	0.489323067323335	0	lncRNA	19524-1_{1..1171}	lnc-CD1B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD1B-3:1	chr1	158097144	158098314	-	lnc-CD1B-3	lnc-CD1B-3:1	XLOC_001053	linc-CD5L-2	NA	NA	NA	inter
CUST_41113_PI429285431	0.9186309	A	0.91901493	A	0.999733846113481	0	lncRNA	41868-1_{1..134}	ENST00000580124 ncrna:miRNA chromosome:GRCh37:16:76413923:76414056:1 gene:ENSG00000264645 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580124 ncrna:miRNA chromosome:GRCh37:16:76413923:76414056:1 gene:ENSG00000264645 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 76413923	 76414056	+	ENSG00000264645	ENST00000580124	NA	NA	CNTNAP4	NA	chr16:76403923-76424056	inner
CUST_48184_PI429285431	1.5281814	A	1.0474969	A	1.39540557238874	0	lncRNA	52047-2_{3001..5136}	"gi|410170046|ref|XR_172449.1| PREDICTED: Homo sapiens uncharacterized LOC101060781 (LOC101060781), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170046|ref|XR_172449.1| PREDICTED: Homo sapiens uncharacterized LOC101060781 (LOC101060781), misc_RNA"	NA	NA	NA	NA	NA	XR_172449.1	NA	NA	NA	NA	NA	Unknown
CUST_16898_PI429285431	1.204381	A	1.0175767	A	1.13823961764649	0	lncRNA	18606-1_{1..671}	lnc-ANKRD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD1-2:1	chr10	 92796888	 92797558	-	lnc-ANKRD1-2	lnc-ANKRD1-2:1	XLOC_008903	linc-ANKRD1-1	NA	NA	NA	inter
CUST_25553_PI429285431	1.735522	A	1.4443293	A	1.2236514726854	0	lncRNA	27082-1_{1..390}	lnc-AL358813.2-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-AL358813.2-2:5	chr1	149591078	149591467	+	lnc-AL358813.2-2	lnc-AL358813.2-2:5	ENSG00000232151.3	RP11-277L2.2	NA	NA	NA	inter
CUST_21441_PI429285431	4.898047	P	4.2380247	P	1.5801070475404	0	lncRNA	23060-1_{1..2044}	lnc-COMMD6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COMMD6-1:1	chr13	 76205407	 76207450	-	lnc-COMMD6-1	lnc-COMMD6-1:1	ENSG00000228444.1	LMO7-AS1	LMO7	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-29.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50chr13:76195407-76216271"	NA	inner
CUST_33277_PI429285431	2.3936615	A	1.5371937	A	1.81059992531488	0	lncRNA	34861-1_{1..1810}	n339984|BC078172|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2437|NULL|-0.9988510|-0.3001972	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339984|BC078172|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2437|NULL|-0.9988510|-0.3001972	chr10	 17256244	 17258053	-	NA	NA	NA	NA	VIM	"hg19_refFlat_VIM:range=chr10:17271422-172792705'pad=0,hg19_refFlat_VIM:range=chr10:17271422-172792705'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.30;hg19_refFlat_NEFM:range=chr8:24771307-247761195'pad=0,hg19_refFlat_NEFM:range=chr8:24771307-247761195'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10chr10:17270258-17279592"	NA	inner
CUST_42970_PI429285431	6.9152	P	7.1242523	P	0.865105328566326	0	lncRNA	46114-1_{1..98}	ENST00000391284 ncrna:snoRNA chromosome:GRCh37:6:38790083:38790180:-1 gene:ENSG00000212586 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391284 ncrna:snoRNA chromosome:GRCh37:6:38790083:38790180:-1 gene:ENSG00000212586 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	 38790083	 38790180	-	ENSG00000212586	ENST00000391284	NA	NA	DNAH8	NA	chr6:38780083-38800180	inner
CUST_48904_PI429285431	5.21183	P	6.052361	P	0.558437991874847	0	lncRNA	52745-1_{1..1586}	hg19_lincRNAsTranscripts_TCONS_l2_00019482 range=chr3:125505729-125508117 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019482 range=chr3:125505729-125508117 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	125505729	125507314	-	NA	NA	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40"	NA	inter
LNCA_21_P0011595	6.494331	P	7.16954	P	0.626241490537971	0	lncRNA	TCONS_l2_00011289	NA	NA	NA	NA	XLOC_l2_006101	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006101), lincRNA [TCONS_l2_00011289]"	chr17:43665719-43665660	hs|17q21.31	Agilent_HUMAN_G3V2	TCONS_l2_00011289	TCONS_l2_00011289	chr17	 43665660	 43665719	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009172	8.040308	P	8.06054	P	0.986074121019526	0	lncRNA	ENST00000509943	NA	NA	NA	NA	XLOC_012240	NA	ENST00000509943	NA	NA	"BROAD Institute lincRNA (XLOC_012240), lincRNA [TCONS_00025184]"	chr17:48291756-48291815	hs|17q21.33	Agilent_HUMAN_G3V2	ENST00000509943	ENST00000509943	chr17	 48291756	 48291815	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1738_PI429285431	0.90753424	A	0.90857863	A	0.999276345980054	0	lncRNA	1724-1_{1..788}	"transcript_id ""ENST00000505298.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505298.1"" | genecode_v17"	chr4	 36498315	 36499102	-	ENSG00000248215.1	ENST00000505298.1	RP11-722M1.1	RP11-722M1.1-002	NA	NA	NA	inter
CUST_40126_PI429285431	2.1246083	A	1.5385853	A	1.50110302848625	0	lncRNA	40967-1_{1..3000}	n407685|NR_027154|lncRNA|Homosapiens||RefGeneNoncode|NR_027154||12.7520000|-0.3053844	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407685|NR_027154|lncRNA|Homosapiens||RefGeneNoncode|NR_027154||12.7520000|-0.3053844	chr16	 22448328	 22451327	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36458_PI429285431	1.505253	A	1.7483205	A	0.844946850592091	0	lncRNA	37668-1_{1..388}	n344968|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_517|NULL|-1.3453600|-0.1564827	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344968|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_517|NULL|-1.3453600|-0.1564827	chr7	115959694	115960081	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17532_PI429285431	1.0690435	A	0.9973532	A	1.05094728045458	0	lncRNA	19257-1_{1..1931}	lnc-VSTM2B-6:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VSTM2B-6:6	chr19	 29461311	 29463241	+	lnc-VSTM2B-6	lnc-VSTM2B-6:6	XLOC_013027	linc-VSTM2B-6	NA	NA	NA	inter
CUST_40864_PI429285431	6.734127	P	7.2430325	P	0.702755380765854	0	lncRNA	41563-1_{1..2972}	n410660|NR_037904|lncRNA|Homosapiens||RefGeneNoncode|NR_037904||4.4991800|-0.1429540	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410660|NR_037904|lncRNA|Homosapiens||RefGeneNoncode|NR_037904||4.4991800|-0.1429540	chr2	238875586	238878557	+	NA	NA	NA	NA	UBE2F	NA	chr2:238875587-238951423	inter
CUST_22024_PI429285431	1.1313269	A	1.5762758	A	0.734610335944902	0	lncRNA	23632-2_{3001..4116}	lnc-XPC-5:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XPC-5:6	chr3	 14570358	 14571473	-	lnc-XPC-5	lnc-XPC-5:6	ENSG00000144596.7	GRIP2	GRIP2	NA	chr3:14557358-14577490	inner
CUST_30316_PI429285431	2.0183985	A	0.8875713	A	2.18984263565312	0	lncRNA	32092-1_{1..487}	n335227|AY540001|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255296|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255296|1.6605700|-0.4029029	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335227|AY540001|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255296|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255296|1.6605700|-0.4029029	chrX	 10469481	 10469967	-	NA	NA	NA	NA	MID1	NA	chrX:10459481-10545202	inner
CUST_12900_PI429285431	0.898175	A	1.1706071	A	0.82792265399553	0	lncRNA	14529-1_{1..1571}	lnc-CHD1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CHD1L-1:1	chr1	146646003	146647573	+	lnc-CHD1L-1	lnc-CHD1L-1:1	XLOC_000385	linc-CHD1L-1	FMO5	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20chr1:146655884-146656784"	NA	inter
CUST_173_PI429201921	3.5215013	P	3.3548546	P	1.12244651372317	0	lncRNA	145-2_{3001..4476}	TC07002109.hg.1	TCONS_l2_00027030-XLOC_l2_013256 // Broad TUCP // linc-CHST12 chr7:+:2423755-2428232 // chr7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr7:+:2423755-2428232	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00027030-XLOC_l2_013256	linc-CHST12	chr7	  2423755	  2428232	+	NA	NA	NA	NA	CAMTA1	NA	chr1:7748363-7768932	Unknown
CUST_25175_PI429285431	2.1775498	A	2.560595	A	0.766817304880364	0	lncRNA	26706-1_{1..539}	lnc-ATF7IP-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATF7IP-2:2	chr12	 14772672	 14773210	+	lnc-ATF7IP-2	lnc-ATF7IP-2:2	ENSG00000256751.1	RP11-695J4.2	GUCY2C	"hg19_refFlat_GUCY2C:range=chr12:14766051-148493825'pad=0,hg19_refFlat_GUCY2C:range=chr12:14766051-148493825'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90chr12:14765566-14782689"	NA	inner
CUST_26366_PI429285431	3.5634058	P	3.4533	P	1.07930738457874	0	lncRNA	27873-1_{1..680}	lnc-KIAA1324L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1324L-1:1	chr7	 86415586	 86416265	-	lnc-KIAA1324L-1	lnc-KIAA1324L-1:1	ENSG00000233073.1	AC005009.2	GRM3	"hg19_refFlat_GRM3:range=chr7:86394462-864936715'pad=0,hg19_refFlat_GRM3:range=chr7:86394462-864936715'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.10chr7:86405586-86425986"	NA	inner
CUST_49615_PI429285431	0.90321416	A	0.91400766	A	0.992546432546065	0	lncRNA	53403-1_{1..503}	hg19_lincRNAsTranscripts_TCONS_l2_00026028 range=chr7:76532714-76548602 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026028 range=chr7:76532714-76548602 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 76532714	 76533216	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21281_PI429285431	1.8888671	A	0.9206986	A	1.95635542667055	0	lncRNA	22906-1_{1..343}	lnc-KCTD3-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCTD3-2:3	chr1	216260064	216260406	+	lnc-KCTD3-2	lnc-KCTD3-2:3	ENSG00000233620.1	RP11-22M7.2	USH2A	"hg19_refFlat_USH2A:range=chr1:215799123-2165956785'pad=0,hg19_refFlat_USH2A:range=chr1:215799123-2165956785'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10chr1:216250064-216270247"	NA	inner
CUST_50915_PI429285431	1.1660233	A	0.907028	A	1.19664506480395	0	lncRNA	54556-1_{1..359}	hg19_lincRNAsTranscripts_TCONS_l2_00006121 range=chr12:9550148-9551198 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006121 range=chr12:9550148-9551198 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  9550148	  9550506	-	NA	NA	NA	NA	LOC728715	NA	chr12:9549658-9555094	inter
CUST_24396_PI429285431	4.1741304	P	3.7722962	P	1.32118656114969	0	lncRNA	25949-1_{1..471}	lnc-IBTK-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-IBTK-2:1	chr6	 82445967	 82446437	-	lnc-IBTK-2	lnc-IBTK-2:1	ENSG00000232031.1	RP5-991C6.4	FAM46A	NA	chr6:82455447-82456070	inter
CUST_16059_PI429285431	2.889337	A	3.1985645	P	0.807073796208965	0	lncRNA	17761-1_{1..521}	lnc-RP11-204N11.1.1-3:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-204N11.1.1-3:12	chr14	 98444314	 98444834	-	lnc-RP11-204N11.1.1-3	lnc-RP11-204N11.1.1-3:12	XLOC_011117	linc-ATG2B-2	NA	NA	NA	inter
CUST_43554_PI429285431	4.2296467	P	4.540402	P	0.806219565308628	0	lncRNA	48329-1_{1..1517}	"gi|410170390|ref|XR_132801.3| PREDICTED: Homo sapiens uncharacterized LOC100506257 (LOC100506257), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170390|ref|XR_132801.3| PREDICTED: Homo sapiens uncharacterized LOC100506257 (LOC100506257), misc_RNA"	NA	NA	NA	NA	NA	XR_132801.3	NA	NA	NA	NA	NA	Unknown
CUST_43576_PI429285431	6.7456155	P	7.3403163	P	0.662181770594962	0	lncRNA	48347-1_{1..1287}	"gi|213972563|ref|NR_024510.1| Homo sapiens long intergenic non-protein coding RNA 623 (LINC00623), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|213972563|ref|NR_024510.1| Homo sapiens long intergenic non-protein coding RNA 623 (LINC00623), non-coding RNA"	Chr1	144300512	144301798	-	728855	NR_024510.1	NA	NA	NA	NA	NA	inter
CUST_14253_PI429285431	0.9034025	A	0.8977276	A	1.00394128746087	0	lncRNA	15910-1_{1..717}	lnc-CRYBA4-1:45	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:45	chr22	 27134025	 27134741	+	lnc-CRYBA4-1	lnc-CRYBA4-1:45	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
CUST_5006_PI429285431	4.9799056	P	5.515759	P	0.68975054661418	0	lncRNA	4948-1_{1..3000}	"transcript_id ""ENST00000455531.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455531.1"" | genecode_v17"	chr14	101299615	101302614	+	ENSG00000214548.9	ENST00000455531.1	MEG3	MEG3-008	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50"	NA	inter
CUST_41001_PI429285431	1.1116874	A	0.9000792	A	1.15797828546004	0	lncRNA	41665-2_{3001..4246}	n411518|NR_039988|lncRNA|Homosapiens||RefGeneNoncode|NR_039988||0.3355420|-0.2130761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411518|NR_039988|lncRNA|Homosapiens||RefGeneNoncode|NR_039988||0.3355420|-0.2130761	chr22	 40431335	 40432580	+	NA	NA	NA	NA	TNRC6B	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00chr22:40440821-40442581"	NA	inter
CUST_33137_PI429285431	0.909603	A	0.93757784	A	0.980796108514605	0	lncRNA	34733-1_{1..3000}	n339826|BX648108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2273|NULL|0.0490647|-0.2305507	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n339826|BX648108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2273|NULL|0.0490647|-0.2305507	chr18	 31100465	 31103464	-	NA	NA	NA	NA	ASXL3	NA	chr18:31158541-31168151	inter
LNCA_21_P0014643	4.095545	P	4.039326	P	1.03973725451383	0	lncRNA	XR_110876	XR_110876	XR_110876	NA	Hs.149545	LOC100507420	uncharacterized LOC100507420	NA	THC2661800	NA	"PREDICTED: Homo sapiens hypothetical LOC100507420, transcript variant 1 (LOC100507420), miscRNA [XR_110876]"	chr8:37264108-37264049	hs|8p11.23	Agilent_HUMAN_G3V2	XR_110876	XR_110876	chr8	 37264049	 37264108	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43200_PI429285431	1.8560222	A	1.535364	A	1.24890020402847	0	lncRNA	48014-1_{1..450}	ENST00000602316 havana:sense_intronic chromosome:GRCh37:3:65344943:65345392:-1 gene:ENSG00000270059 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602316 havana:sense_intronic chromosome:GRCh37:3:65344943:65345392:-1 gene:ENSG00000270059 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr3	 65344943	 65345392	-	ENSG00000270059	ENST00000602316	NA	NA	MAGI1	NA	chr3:65339906-65355392	inner
CUST_41203_PI429285431	3.3060298	P	3.92972	P	0.649008734693539	0	lncRNA	42078-1_{1..119}	ENST00000579518 ncrna:miRNA chromosome:GRCh37:22:35731633:35731751:1 gene:ENSG00000266320 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579518 ncrna:miRNA chromosome:GRCh37:22:35731633:35731751:1 gene:ENSG00000266320 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 35731633	 35731751	+	ENSG00000266320	ENST00000579518	NA	NA	TOM1	NA	chr22:35721633-35741751	inter
CUST_42869_PI429285431	3.0979567	A	3.118777	P	0.985672103179738	0	lncRNA	45930-1_{1..133}	ENST00000516449 ncrna:snoRNA chromosome:GRCh37:18:3025432:3025564:-1 gene:ENSG00000252258 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516449 ncrna:snoRNA chromosome:GRCh37:18:3025432:3025564:-1 gene:ENSG00000252258 gene_biotype:snoRNA transcript_biotype:snoRNA	chr18	  3025432	  3025564	-	ENSG00000252258	ENST00000516449	NA	NA	NA	NA	NA	inter
CUST_15386_PI429285431	0.90928376	A	0.9124426	A	0.997812854256624	0	lncRNA	17070-1_{1..414}	lnc-ATG5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATG5-1:1	chr6	106807393	106807806	-	lnc-ATG5-1	lnc-ATG5-1:1	XLOC_005797	linc-ATG5-1	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-26.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
CUST_44633_PI429285431	1.636857	A	1.9814228	A	0.787544963985895	0	lncRNA	49199-1_{1..1005}	"gi|336020380|ref|NR_038402.1| Homo sapiens uncharacterized LOC100507387 (LOC100507387), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336020380|ref|NR_038402.1| Homo sapiens uncharacterized LOC100507387 (LOC100507387), non-coding RNA"	Chr5	175546552	175547556	+	100507387	NR_038402.1	NA	NA	NA	NA	NA	inter
CUST_16855_PI429285431	4.456503	P	4.6706896	P	0.862032041492985	0	lncRNA	18561-2_{3001..3824}	lnc-WDR60-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR60-4:2	chr7	158817364	158818187	+	lnc-WDR60-4	lnc-WDR60-4:2	XLOC_006322	ENSG00000231419	VIPR2	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90chr7:158820866-158825371"	NA	inter
CUST_43675_PI429285431	6.551292	P	4.3969274	P	4.45172538673791	0	lncRNA	48428-3_{6001..6857}	"gi|357430785|ref|NR_045530.1| Homo sapiens sterol O-acyltransferase 1 (SOAT1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|357430785|ref|NR_045530.1| Homo sapiens sterol O-acyltransferase 1 (SOAT1), transcript variant 4, non-coding RNA"	Chr1	179268849	179269705	+	6646	NR_045530.1	NA	NA	NA	"hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60"	NA	inter
CUST_14382_PI429285431	0.91660666	A	1.0758735	A	0.895480027329839	0	lncRNA	16043-1_{1..1002}	lnc-TLE3-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TLE3-6:1	chr15	 69754351	 69755352	-	lnc-TLE3-6	lnc-TLE3-6:1	XLOC_011518	linc-ANP32A-1	RPLP1	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80chr15:69745159-69747884"	NA	inter
CUST_42938_PI429285431	8.00995	P	7.883609	P	1.09152184215001	0	lncRNA	46057-1_{1..135}	ENST00000364587 ncrna:snoRNA chromosome:GRCh37:1:40033046:40033180:-1 gene:ENSG00000201457 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364587 ncrna:snoRNA chromosome:GRCh37:1:40033046:40033180:-1 gene:ENSG00000201457 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 40033046	 40033180	-	ENSG00000201457	ENST00000364587	NA	NA	PABPC4	NA	chr1:40026485-40042521	inner
CUST_34136_PI429285431	0.89618677	A	0.89623845	A	0.999964178795303	0	lncRNA	35656-1_{1..719}	n340976|BC015849|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3442|NULL|-1.2890500|-0.3022607	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340976|BC015849|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3442|NULL|-1.2890500|-0.3022607	chr11	 13942996	 13943714	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43472_PI429285431	0.902327	A	0.8973098	A	1.00348371210297	0	lncRNA	48273-1_{1..925}	"gi|209180470|ref|NR_002314.3| Homo sapiens solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 1 (SLC25A3P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209180470|ref|NR_002314.3| Homo sapiens solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 1 (SLC25A3P1), non-coding RNA"	Chr1	 53904043	 53904967	-	163742	NR_002314.3	NA	NA	NA	NA	NA	inter
LNCA_21_P0005048	0.9143321	A	0.9028958	A	1.00795854126009	0	lncRNA	TCONS_00012237	NA	NA	NA	NA	XLOC_005794	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005794), lincRNA [TCONS_00012237]"	chr6:105374358-105374299	hs|6q16.3	Agilent_HUMAN_G3V2	TCONS_00012237	TCONS_00012237	chr6	105374299	105374358	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41026_PI429285431	5.579268	P	5.495471	P	1.05980364912327	0	lncRNA	41685-1_{1..827}	n411651|NR_040114|lncRNA|Homosapiens||RefGeneNoncode|NR_040114||1.0629000|-0.1845665	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411651|NR_040114|lncRNA|Homosapiens||RefGeneNoncode|NR_040114||1.0629000|-0.1845665	chr22	 32517963	 32518789	+	NA	NA	NA	NA	SLC5A1	NA	chr22:32507963-32509016	inter
LNCA_21_P0001370	0.916391	A	0.90484333	A	1.00803635443095	0	lncRNA	TCONS_00001131	NA	NA	NA	NA	XLOC_000373	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000373), lincRNA [TCONS_00001131]"	chr1:120637886-120637945	hs|1p11.2	Agilent_HUMAN_G3V2	TCONS_00001131	TCONS_00001131	chr1	120637886	120637945	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12307_PI429285431	7.198766	P	7.6249065	P	0.744250143631963	0	lncRNA	13920-1_{1..963}	lnc-AC009336.1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC009336.1-5:3	chr2	177502190	177503152	-	lnc-AC009336.1-5	lnc-AC009336.1-5:3	XLOC_002408	linc-EVX2-8	NA	NA	NA	inter
CUST_4323_PI429285431	0.8947875	A	0.8928279	A	1.00135921411034	0	lncRNA	4278-1_{1..459}	"transcript_id ""ENST00000551387.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551387.1"" | genecode_v17"	chr12	 74154469	 74154927	+	ENSG00000257750.1	ENST00000551387.1	RP11-295G12.1	RP11-295G12.1-001	NA	NA	NA	inter
CUST_8331_PI429285431	0.9257622	A	0.92936724	A	0.997504296148298	0	lncRNA	9913-1_{1..2158}	lnc-CLLU1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CLLU1.1-2:1	chr12	 92560895	 92563052	+	lnc-CLLU1.1-2	lnc-CLLU1.1-2:1	ENSG00000245904	ENST00000501008	NA	NA	NA	inter
CUST_28456_PI429285431	4.6801453	P	5.2974677	P	0.651879675375477	0	lncRNA	30117-3_{6001..6852}	n325784|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000125972|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000125972|2.0091200|-0.3702906	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325784|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000125972|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000125972|2.0091200|-0.3702906	chr13	 29630022	 29630873	-	NA	NA	NA	NA	MTUS2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70chr13:29614022-29641758"	NA	inner
CUST_40727_PI429285431	2.5262654	A	1.7373494	A	1.72777577322776	0	lncRNA	41461-1_{1..1880}	n410317|NR_037181_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037181_6||-0.9825640|-0.2196447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410317|NR_037181_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037181_6||-0.9825640|-0.2196447	chr6	   800517	   802396	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004833	0.9229353	A	1.5425032	A	0.650865838639976	0	lncRNA	TCONS_00011687	NA	NA	NA	NA	XLOC_005160	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005160), lincRNA [TCONS_00011687]"	chr6:8930821-8930880	hs|6p24.3	Agilent_HUMAN_G3V2	TCONS_00011687	TCONS_00011687	chr6	  8930821	  8930880	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34390_PI429285431	0.9085631	A	1.7032591	A	0.576464631351881	0	lncRNA	35874-1_{1..1126}	n341260|CR626993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3728|NULL|-0.6202130|-0.4651849	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341260|CR626993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3728|NULL|-0.6202130|-0.4651849	chr7	 76822687	 76823812	-	NA	NA	NA	NA	CCDC146	NA	chr7:76812687-76833690	inner
CUST_45738_PI429285431	0.9069722	A	0.9204422	A	0.990706759054993	0	lncRNA	50087-1_{1..1600}	"gi|397139391|ref|XR_158864.1| PREDICTED: Homo sapiens uncharacterized LOC100505870 (LOC100505870), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139391|ref|XR_158864.1| PREDICTED: Homo sapiens uncharacterized LOC100505870 (LOC100505870), misc_RNA"	NA	NA	NA	NA	NA	XR_158864.1	NA	NA	NA	NA	NA	Unknown
CUST_42507_PI429285431	3.5470247	P	3.9218712	P	0.771187461213605	0	lncRNA	45285-1_{1..73}	ENST00000384027 ncrna:snoRNA chromosome:GRCh37:6:133136446:133136518:1 gene:ENSG00000206754 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384027 ncrna:snoRNA chromosome:GRCh37:6:133136446:133136518:1 gene:ENSG00000206754 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	133136446	133136518	+	ENSG00000206754	ENST00000384027	NA	NA	RPS12	NA	chr6:133135708-133138703	inner
CUST_29044_PI429285431	1.6110234	A	2.5043635	A	0.538366259020771	0	lncRNA	30773-1_{1..598}	n326534|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029425|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029425|-1.2515200|-0.2219780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326534|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029425|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029425|-1.2515200|-0.2219780	chr1	 90193812	 90194409	-	NA	NA	NA	NA	LRRC8C	NA	chr1:90183812-90185094	inter
CUST_50647_PI429285431	0.9253814	A	1.2529663	A	0.796869342850128	0	lncRNA	54327-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00002971 range=chr10:37530905-37557274 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002971 range=chr10:37530905-37557274 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 37530905	 37533904	+	NA	NA	NA	NA	ANKRD30A	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90chr10:37520905-37521495"	NA	inter
CUST_38942_PI429285431	2.4457154	A	2.8174098	A	0.772874246998676	0	lncRNA	39930-1_{1..3000}	n385094|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003sya.2||0.7382050|-0.3245939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385094|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003sya.2||0.7382050|-0.3245939	chr7	 26572739	 26575738	-	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80"	NA	inter
CUST_23311_PI429285431	2.0992992	A	1.2057446	A	1.8577477216771	0	lncRNA	24882-1_{1..592}	lnc-BLID-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BLID-1:10	chr11	121972155	121972746	-	lnc-BLID-1	lnc-BLID-1:10	ENSG00000255248.2	RP11-166D19.1	NA	NA	NA	inter
CUST_5818_PI429285431	0.92546767	A	0.9209497	A	1.00313652680618	0	lncRNA	5745-1_{1..662}	"transcript_id ""ENST00000577556.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577556.1"" | genecode_v17"	chr17	 33052528	 33053189	-	ENSG00000264174.1	ENST00000577556.1	RP11-212E8.1	RP11-212E8.1-001	NA	NA	NA	inter
CUST_25666_PI429285431	4.8842793	P	4.7867403	P	1.06994675210175	0	lncRNA	27195-1_{1..664}	lnc-SH3BP4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-SH3BP4-4:1	chr2	236415597	236416260	+	lnc-SH3BP4-4	lnc-SH3BP4-4:1	ENSG00000235529.1	AGAP1-IT1	AGAP1	NA	chr2:236405597-236426210	inner
CUST_32362_PI429285431	2.1410844	A	1.3608022	A	1.7174667870601	0	lncRNA	34040-1_{1..2048}	n338945|AK057313|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1373|NULL|-0.6451830|-0.2101535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338945|AK057313|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1373|NULL|-0.6451830|-0.2101535	chr2	120436774	120438821	+	NA	NA	NA	NA	TMEM177	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70chr2:120436743-120439694"	NA	inner
CUST_25621_PI429285431	0.9301895	A	1.296827	A	0.775588060661464	0	lncRNA	27151-1_{1..652}	lnc-SYCE1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SYCE1L-1:1	chr16	 77324433	 77325084	+	lnc-SYCE1L-1	lnc-SYCE1L-1:1	ENSG00000260922.1	RP11-538I12.3	ADAMTS18	"hg19_refFlat_ADAMTS18:range=chr16:77317853-774685925'pad=0,hg19_refFlat_ADAMTS18:range=chr16:77317853-774685925'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50chr16:77316025-77334831"	NA	inner
LNCA_21_P0007034	10.520893	P	10.032143	P	1.40322854399233	0	lncRNA	TCONS_00018642	NA	NA	NA	NA	XLOC_008993	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008993), lincRNA [TCONS_00018642]"	chr10:131170533-131170474	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_00018642	TCONS_00018642	chr10	131170474	131170533	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43563_PI429285431	1.4727305	A	2.3042326	A	0.561943854982891	0	lncRNA	48337-1_{1..666}	"gi|310118639|ref|XR_110493.1| PREDICTED: Homo sapiens uncharacterized LOC100506478 (LOC100506478), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118639|ref|XR_110493.1| PREDICTED: Homo sapiens uncharacterized LOC100506478 (LOC100506478), misc_RNA"	NA	NA	NA	NA	NA	XR_110493.1	NA	NA	NA	NA	NA	Unknown
CUST_9600_PI429285431	0.9169327	A	1.054219	A	0.909227799423412	0	lncRNA	11115-1_{1..585}	lnc-NKAIN3-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NKAIN3-6:1	chr8	 64369316	 64369900	+	lnc-NKAIN3-6	lnc-NKAIN3-6:1	XLOC_006820	linc-BHLHE22-4	NA	NA	NA	inter
CUST_43864_PI429285431	13.994268	P	14.288239	P	0.815653888851831	0	lncRNA	48585-1_{1..1895}	"gi|261399878|ref|NR_029402.1| Homo sapiens chaperonin containing TCP1, subunit 7 (eta) (CCT7), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|261399878|ref|NR_029402.1| Homo sapiens chaperonin containing TCP1, subunit 7 (eta) (CCT7), transcript variant 5, non-coding RNA"	Chr2	 73461364	 73463258	+	10574	NR_029402.1	NA	NA	NA	NA	NA	inter
CUST_5020_PI429285431	0.8998546	A	0.8982204	A	1.001133382916	0	lncRNA	4960-1_{1..469}	"transcript_id ""ENST00000555354.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555354.1"" | genecode_v17"	chr14	101405223	101405691	+	ENSG00000225746.4	ENST00000555354.1	AL132709.5	AL132709.5-010	NA	NA	NA	inter
CUST_32493_PI429285431	4.5620527	P	3.8273635	P	1.6640389466567	0	lncRNA	34161-1_{1..2756}	n339098|AF461810|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1528|NULL|-1.2412300|-0.3108693	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339098|AF461810|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1528|NULL|-1.2412300|-0.3108693	chr16	 17176151	 17178906	-	NA	NA	NA	NA	XYLT1	NA	chr16:17188210-17188906	inter
CUST_13741_PI429285431	1.5963224	A	1.0135528	A	1.49772172750093	0	lncRNA	15384-1_{1..414}	lnc-KLF6-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF6-6:1	chr10	  4282814	  4283227	-	lnc-KLF6-6	lnc-KLF6-6:1	XLOC_008701	linc-KLF6-1	NA	NA	NA	inter
CUST_19943_PI429285431	1.2933524	A	1.2997366	A	0.995584586497546	0	lncRNA	21598-1_{1..597}	lnc-LRRC18-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-LRRC18-3:1	chr10	 49832971	 49833567	-	lnc-LRRC18-3	lnc-LRRC18-3:1	ENSG00000251413.1	RP11-534L6.5	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40"	NA	inter
CUST_20908_PI429285431	2.512504	A	0.89574414	A	3.06685479162816	0	lncRNA	22539-1_{1..787}	lnc-ALX4-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALX4-7:1	chr11	 43380771	 43381557	-	lnc-ALX4-7	lnc-ALX4-7:1	ENSG00000254907.1	RP11-484D2.2	TTC17	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_API5:range=chr11:43333678-433640605'pad=0,hg19_refFlat_API5:range=chr11:43333678-433640605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_API5:range=chr11:43333678-433640055'pad=0,hg19_refFlat_API5:range=chr11:43333678-433640055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70chr11:43380435-43390846"	NA	inner
LNCA_21_P0001690	2.4436762	A	2.4260237	A	1.01231094401651	0	lncRNA	TCONS_00002076	NA	NA	NA	NA	XLOC_000266	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000266), lincRNA [TCONS_00002076]"	chr1:79775237-79775296	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_00002076	TCONS_00002076	chr1	 79775237	 79775296	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6776_PI429285431	4.8469615	P	5.621546	P	0.584556953993642	0	lncRNA	6723-1_{1..559}	"transcript_id ""ENST00000453910.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453910.1"" | genecode_v17"	chr21	 17791838	 17792396	+	ENSG00000215386.6	ENST00000453910.1	LINC00478	LINC00478-009	NA	NA	NA	inter
LNCA_21_P0008750	3.5209875	P	3.705011	P	0.880244675177175	0	lncRNA	TCONS_00023702	NA	NA	NA	NA	XLOC_011507	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011507), lincRNA [TCONS_00023702]"	chr15:65540601-65540542	hs|15q22.31	Agilent_HUMAN_G3V2	TCONS_00023702	TCONS_00023702	chr15	 65540542	 65540601	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24193_PI429285431	4.1028323	P	4.3778706	P	0.826428378225026	0	lncRNA	25744-1_{1..739}	lnc-NBPF11-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-NBPF11-1:3	chr1	146156940	146157678	-	lnc-NBPF11-1	lnc-NBPF11-1:3	ENSG00000227733.2	RP4-565E6.1	NA	NA	NA	inter
CUST_34272_PI429285431	0.9247377	A	0.91974896	A	1.00346391660638	0	lncRNA	35773-1_{1..3000}	n341130|BX537510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3596|NULL|-0.7089240|-0.2577063	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341130|BX537510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3596|NULL|-0.7089240|-0.2577063	chr11	115509280	115512279	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8609_PI429285431	0.9101438	A	0.92447865	A	0.99011303969536	0	lncRNA	10163-1_{1..409}	lnc-TMPRSS11E-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMPRSS11E-1:6	chr4	 68945839	 68946247	+	lnc-TMPRSS11E-1	lnc-TMPRSS11E-1:6	ENSG00000248049	RP11-453E17.1	TMPRSS11F	"hg19_refFlat_SYT14:range=chr1:210187031-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210187031-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_SYT14:range=chr1:210111610-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111610-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00chr4:68935839-68955944"	NA	inner
CUST_36059_PI429285431	3.2999735	P	3.2510548	P	1.03448928344055	0	lncRNA	37371-4_{9001..12000}	n344653|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_201|NULL|-1.3065500|-0.2698776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n344653|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_201|NULL|-1.3065500|-0.2698776	chr1	 94173463	 94176462	-	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40"	NA	inner
CUST_43667_PI429285431	2.8279228	A	1.731545	A	2.13817183432105	0	lncRNA	48422-1_{1..852}	"gi|397138912|ref|XR_108307.2| PREDICTED: Homo sapiens uncharacterized LOC100505991, transcript variant 2 (LOC100505991), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138912|ref|XR_108307.2| PREDICTED: Homo sapiens uncharacterized LOC100505991, transcript variant 2 (LOC100505991), misc_RNA"	NA	NA	NA	NA	NA	XR_108307.2	NA	NA	NA	NA	NA	Unknown
CUST_11148_PI429285431	1.1707711	A	1.3208379	A	0.901208733669205	0	lncRNA	12706-1_{1..370}	lnc-RASA1-3:20	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASA1-3:20	chr5	 87581561	 87581930	+	lnc-RASA1-3	lnc-RASA1-3:20	XLOC_004457	linc-POLR3G-10	NA	NA	NA	inter
CUST_3235_PI429285431	0.91275895	A	0.99117094	A	0.947099569031228	0	lncRNA	3214-1_{1..528}	"transcript_id ""ENST00000520962.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520962.1"" | genecode_v17"	chr8	 94846682	 94847209	-	ENSG00000254057.1	ENST00000520962.1	RP3-388N13.3	RP3-388N13.3-001	NA	NA	NA	inter
LNCA_21_P0006245	2.3437848	A	2.572337	A	0.853490973181548	0	lncRNA	TCONS_00016233	NA	NA	NA	NA	XLOC_007615	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007615), lincRNA [TCONS_00016233]"	chr9:139548474-139548533	hs|9q34.3	Agilent_HUMAN_G3V2	TCONS_00016233	TCONS_00016233	chr9	139548474	139548533	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012830	0.923792	A	0.9248347	A	0.999277516551773	0	lncRNA	TCONS_l2_00022337	NA	NA	NA	NA	XLOC_l2_011604	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011604), lincRNA [TCONS_l2_00022337]"	chr5:61029126-61029185	hs|5q12.1	Agilent_HUMAN_G3V2	TCONS_l2_00022337	TCONS_l2_00022337	chr5	 61029126	 61029185	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29994_PI429285431	2.3860304	A	2.607803	A	0.857511188327044	0	lncRNA	31760-1_{1..217}	n334373|S77168|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216715|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216715|1.0340200|-0.1698855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334373|S77168|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216715|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216715|1.0340200|-0.1698855	chr4	100340207	100340423	-	NA	NA	NA	NA	ADH7	NA	chr4:100333418-100351836	inner
CUST_24769_PI429285431	0.90392673	A	0.89958555	A	1.00301360849292	0	lncRNA	26313-1_{1..408}	lnc-CDK5R1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK5R1-2:1	chr17	 30858247	 30858654	+	lnc-CDK5R1-2	lnc-CDK5R1-2:1	ENSG00000266599.1	RP11-466A19.3	MYO1D	NA	chr17:30848247-30868510	inner
CUST_37831_PI429285431	9.423496	P	9.048784	P	1.29658069709316	0	lncRNA	38923-1_{1..752}	n346353|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1903|NULL|-1.3996000|-0.3633951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346353|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1903|NULL|-1.3996000|-0.3633951	chr7	 64527358	 64528109	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26261_PI429285431	1.1674577	A	0.90459	A	1.19986134599659	0	lncRNA	27768-1_{1..418}	lnc-TM6SF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TM6SF1-1:1	chr15	 83854686	 83855103	+	lnc-TM6SF1-1	lnc-TM6SF1-1:1	ENSG00000259986.1	RP11-382A20.4	HDGFRP3	NA	chr15:83844686-83864820	inner
CUST_9916_PI429285431	3.3462894	P	3.529235	P	0.880902589876709	0	lncRNA	11440-1_{1..295}	lnc-PHACTR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHACTR2-1:1	chr6	143855680	143855974	+	lnc-PHACTR2-1	lnc-PHACTR2-1:1	XLOC_005490	linc-PHACTR2-1	NA	NA	NA	inter
CUST_4730_PI429285431	1.9454147	A	1.5845901	A	1.28415967391362	0	lncRNA	4675-1_{1..1836}	"transcript_id ""ENST00000551144.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551144.1"" | genecode_v17"	chr14	 20105463	 20107298	+	ENSG00000257357.1	ENST00000551144.1	RP11-244H18.3	RP11-244H18.3-001	OR11H2	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20chr14:20095463-20119540"	NA	inter
CUST_34067_PI429285431	6.49415	P	6.7267942	P	0.851073596900725	0	lncRNA	35596-1_{1..407}	n340890|Z83945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3355|NULL|-1.1231200|-0.1662087	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340890|Z83945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3355|NULL|-1.1231200|-0.1662087	chr6	 25335058	 25335464	-	NA	NA	NA	NA	LRRC16A	NA	chr6:25325058-25345464	inner
CUST_22058_PI429285431	3.0788946	A	2.9032154	A	1.12949603008229	0	lncRNA	23666-1_{1..564}	lnc-C2orf42-3:20	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:20	chr2	 70313256	 70313819	-	lnc-C2orf42-3	lnc-C2orf42-3:20	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_36004_PI429285431	0.9148266	A	0.9096624	A	1.00358596491243	0	lncRNA	37339-1_{1..432}	n344615|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_163|NULL|-1.3924300|-0.2811260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344615|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_163|NULL|-1.3924300|-0.2811260	chr5	 25326388	 25326819	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27434_PI429285431	0.92383856	A	0.9272528	A	0.997636227291239	0	lncRNA	29000-1_{1..412}	n324605|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039751|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039751|-0.7882950|-0.2240158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324605|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039751|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039751|-0.7882950|-0.2240158	chr6	  5796737	  5797148	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28274_PI429285431	5.028974	P	5.227498	P	0.871441666486339	0	lncRNA	29909-1_{1..345}	n325568|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000130384|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000130384|-0.9484650|-0.3597732	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325568|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000130384|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000130384|-0.9484650|-0.3597732	chr17	 15120603	 15120947	-	NA	NA	NA	NA	PMP22	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60chr17:15133096-15133519"	NA	inter
LNCA_21_P0006135	6.5377884	P	6.635677	P	0.934399495245866	0	lncRNA	TCONS_00015940	NA	NA	NA	NA	XLOC_007308	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007308), lincRNA [TCONS_00015940]"	chr9:27536592-27536651	hs|9p21.2	Agilent_HUMAN_G3V2	TCONS_00015940	TCONS_00015940	chr9	 27536592	 27536651	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46168_PI429285431	10.155657	P	10.210832	P	0.962477686748966	0	lncRNA	50416-2_{3001..3895}	"gi|217035108|ref|NR_024563.1| Homo sapiens uncharacterized LOC100130238 (LOC100130238), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|217035108|ref|NR_024563.1| Homo sapiens uncharacterized LOC100130238 (LOC100130238), non-coding RNA"	NW_003315937.1	    52430	    53324	+	100130238	NR_024563.1	NA	NA	NA	NA	NA	Unknown
CUST_47060_PI429285431	9.024082	P	8.993923	P	1.02112465806472	0	lncRNA	51147-1_{1..1329}	"gi|210147419|ref|NR_024282.1| Homo sapiens uncharacterized LOC113230 (LOC113230), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|210147419|ref|NR_024282.1| Homo sapiens uncharacterized LOC113230 (LOC113230), non-coding RNA"	Chr19	 14183821	 14185149	+	113230	NR_024282.1	NA	NA	NA	NA	NA	inter
CUST_40274_PI429285431	9.466127	P	9.9849	P	0.697965194343378	0	lncRNA	41084-1_{1..3000}	n408222|NR_028387|lncRNA|Homosapiens||RefGeneNoncode|NR_028387||7.0566900|-0.1546552	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408222|NR_028387|lncRNA|Homosapiens||RefGeneNoncode|NR_028387||7.0566900|-0.1546552	chr6	 33259430	 33262429	-	NA	NA	NA	NA	RGL2	NA	chr6:33259431-33267176	inner
CUST_51459_PI429285431	7.149088	P	6.8705873	P	1.2129337053295	0	lncRNA	55036-1_{1..692}	hg19_lincRNAsTranscripts_TCONS_l2_00010119 range=chr16:33121293-33123475 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010119 range=chr16:33121293-33123475 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 33121293	 33121984	-	NA	NA	NA	NA	LOC653550	NA	chr16:33111293-33133475	inter
CUST_1059_PI429285431	1.068006	A	1.862646	A	0.576487007976865	0	lncRNA	1049-1_{1..584}	"transcript_id ""ENST00000432894.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432894.1"" | genecode_v17"	chr2	123823727	123824310	-	ENSG00000232740.1	ENST00000432894.1	AC062020.1	AC062020.1-001	NA	NA	NA	inter
CUST_36958_PI429285431	0.9853374	A	0.9201757	A	1.04620219355009	0	lncRNA	38107-1_{1..3000}	n345423|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_972|NULL|-1.6194600|-0.2538491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n345423|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_972|NULL|-1.6194600|-0.2538491	chr1	207974865	207977864	-	NA	NA	NA	NA	CD46	NA	chr1:207964865-207968861	inter
CUST_36314_PI429285431	0.9098058	A	1.0440094	A	0.911172682531593	0	lncRNA	37546-1_{1..2400}	n344841|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_390|NULL|-1.3050800|-0.3612268	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344841|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_390|NULL|-1.3050800|-0.3612268	chr5	102102691	102105090	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47986_PI429285431	1.0670595	A	1.3552278	A	0.818941157338476	0	lncRNA	51874-1_{1..1722}	"gi|410173043|ref|XR_172105.1| PREDICTED: Homo sapiens U3 small nucleolar ribonucleoprotein protein MPP10-like (LOC101060569), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173043|ref|XR_172105.1| PREDICTED: Homo sapiens U3 small nucleolar ribonucleoprotein protein MPP10-like (LOC101060569), misc_RNA"	NA	NA	NA	NA	NA	XR_172105.1	NA	NA	NA	NA	NA	Unknown
CUST_41322_PI429285431	2.7405372	A	2.4333754	A	1.23727123237686	0	lncRNA	42363-1_{1..96}	ENST00000384845 ncrna:miRNA chromosome:GRCh37:6:107232000:107232095:1 gene:ENSG00000207577 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384845 ncrna:miRNA chromosome:GRCh37:6:107232000:107232095:1 gene:ENSG00000207577 gene_biotype:miRNA transcript_biotype:miRNA	chr6	107232000	107232095	+	ENSG00000207577	ENST00000384845	NA	NA	NA	NA	NA	inter
CUST_45623_PI429285431	2.5531573	A	3.2615945	P	0.611982710440077	0	lncRNA	50006-1_{1..1476}	"gi|334883162|ref|NR_038357.1| Homo sapiens uncharacterized LOC100507331 (LOC100507331), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|334883162|ref|NR_038357.1| Homo sapiens uncharacterized LOC100507331 (LOC100507331), non-coding RNA"	Chr10	 75556272	 75557747	-	100507331	NR_038357.1	NA	NA	NA	"hg19_refFlat_ZSWIM8:range=chr10:75545637-755615345'pad=0,hg19_refFlat_ZSWIM8:range=chr10:75545637-755615345'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.30;hg19_refFlat_ZSWIM8:range=chr10:75545637-755612775'pad=0,hg19_refFlat_ZSWIM8:range=chr10:75545637-755612775'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.30"	NA	inter
CUST_31256_PI429285431	3.0288084	A	3.4835367	P	0.72964757231443	0	lncRNA	33047-1_{1..602}	n337712|BC031952|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|94|NULL|-1.0261700|-0.2584004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337712|BC031952|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|94|NULL|-1.0261700|-0.2584004	chr15	 41199008	 41199609	+	NA	NA	NA	NA	VPS18	NA	chr15:41189008-41196173	inter
CUST_21439_PI429285431	0.920416	A	1.0439826	A	0.917915591908334	0	lncRNA	23058-1_{1..1372}	lnc-DHRS7B-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHRS7B-6:1	chr17	 20759259	 20760630	+	lnc-DHRS7B-6	lnc-DHRS7B-6:1	ENSG00000266369.1	RP11-344E13.4	CCDC144NL	NA	chr17:20766708-20770630	inter
CUST_17287_PI429285431	5.7136016	P	5.7898273	P	0.948535911426527	0	lncRNA	19005-1_{1..2284}	lnc-RP11-43D2.2.1-10:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-43D2.2.1-10:2	chr5	124315897	124318180	+	lnc-RP11-43D2.2.1-10	lnc-RP11-43D2.2.1-10:2	XLOC_004536	linc-GRAMD3-4	NA	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20"	NA	inter
CUST_47067_PI429285431	3.3371534	A	2.6639054	A	1.59465905221116	0	lncRNA	51154-1_{1..3000}	"gi|223555976|ref|NR_026828.1| Homo sapiens long intergenic non-protein coding RNA 661 (LINC00661), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223555976|ref|NR_026828.1| Homo sapiens long intergenic non-protein coding RNA 661 (LINC00661), non-coding RNA"	Chr19	 16126444	 16129443	+	126536	NR_026828.1	NA	NA	NA	NA	NA	inter
CUST_18005_PI429285431	4.691054	P	2.4586163	A	4.69927338360212	0	lncRNA	19738-2_{3001..5561}	lnc-OSBP2-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OSBP2-2:12	chr22	 31374156	 31376716	+	lnc-OSBP2-2	lnc-OSBP2-2:12	XLOC_014209	linc-SMTN	MORC2	NA	chr22:31361156-31364187	inter
CUST_21270_PI429285431	0.8962144	A	0.8955301	A	1.00047443312347	0	lncRNA	22895-1_{1..556}	lnc-ANKRA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRA2-2:1	chr5	 73082145	 73082700	-	lnc-ANKRA2-2	lnc-ANKRA2-2:1	ENSG00000249293.1	CTC-575I10.1	RGNEF	NA	chr5:73072145-73092316	inner
CUST_30437_PI429285431	12.013065	P	11.586987	P	1.34357606484262	0	lncRNA	32217-1_{1..289}	n335573|CR542162|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000269031|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000269031|1.4447200|-0.2323796	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335573|CR542162|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000269031|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000269031|1.4447200|-0.2323796	chr1	151955642	151955930	-	NA	NA	NA	NA	S100A10	NA	chr1:151955386-151966714	inner
CUST_1408_PI429285431	0.9157551	A	0.8988	A	1.01182171030958	0	lncRNA	1397-1_{1..515}	"transcript_id ""ENST00000487772.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000487772.1"" | genecode_v17"	chr3	102382007	102382521	-	ENSG00000241754.1	ENST00000487772.1	RP11-280H21.1	RP11-280H21.1-001	NA	NA	NA	inter
CUST_27353_PI429285431	0.9114362	A	1.0957265	A	0.880081905112479	0	lncRNA	28916-1_{1..679}	n324514|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040563|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040563|-0.2348700|-0.2187957	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324514|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040563|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040563|-0.2348700|-0.2187957	chr6	 43016079	 43016757	+	NA	NA	NA	NA	KLC4	"hg19_refFlat_CUL7:range=chr6:43005426-430205265'pad=0,hg19_refFlat_CUL7:range=chr6:43005426-430205265'pad=0 3'pad=0 strand=- repeatMasking=none,-98.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CUL7:range=chr6:43005426-430215965'pad=0,hg19_refFlat_CUL7:range=chr6:43005426-430215965'pad=0 3'pad=0 strand=- repeatMasking=none,-98.70chr6:43027372-43029686"	NA	inner
CUST_50724_PI429285431	11.358919	P	10.760414	P	1.51414671111257	0	lncRNA	54392-1_{1..507}	hg19_lincRNAsTranscripts_TCONS_l2_00003732 range=chr10:99069333-99071581 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003732 range=chr10:99069333-99071581 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 99069333	 99069839	-	NA	NA	NA	NA	FRAT1	NA	chr10:99079022-99081581	inter
CUST_49720_PI429285431	1.273049	A	1.2036942	A	1.04924733579682	0	lncRNA	53496-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_00040336_HOTTIP range=chr7:27238594-27244488 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00040336_HOTTIP range=chr7:27238594-27244488 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 27238594	 27241593	+	NA	NA	NA	NA	HOXA13	NA	chr7:27236499-27239725	inter
CUST_14876_PI429285431	0.9088501	A	0.9007064	A	1.00566074449967	0	lncRNA	16541-1_{1..1214}	lnc-GABRB2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GABRB2-2:1	chr5	161428126	161429339	-	lnc-GABRB2-2	lnc-GABRB2-2:1	XLOC_005067	linc-GABRB2-1	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10"	NA	inter
CUST_8793_PI429285431	4.0762825	P	4.610669	P	0.690452226184571	0	lncRNA	10333-1_{1..534}	lnc-C20orf197-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf197-3:4	chr20	 58755893	 58756426	+	lnc-C20orf197-3	lnc-C20orf197-3:4	ENSG00000228340	RP5-1043L13.1	NA	NA	NA	inter
CUST_13616_PI429285431	3.2431664	P	3.0313375	P	1.1581554437293	0	lncRNA	15255-1_{1..370}	lnc-C11orf74-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C11orf74-5:2	chr11	 38688147	 38688516	+	lnc-C11orf74-5	lnc-C11orf74-5:2	XLOC_009109	linc-API5-6	NA	NA	NA	inter
CUST_34198_PI429285431	3.6325128	P	4.136763	P	0.705026700084457	0	lncRNA	35713-1_{1..1895}	n341053|X15675|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3519|NULL|-0.2271480|-0.1865978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341053|X15675|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3519|NULL|-0.2271480|-0.1865978	chr11	 67387474	 67389368	+	NA	NA	NA	NA	TBX10	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70chr11:67398774-67404864"	NA	inter
CUST_19797_PI429285431	1.2984623	A	2.1602798	A	0.550258907680513	0	lncRNA	21454-1_{1..526}	lnc-MAT2B-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAT2B-3:7	chr5	164598384	164598909	+	lnc-MAT2B-3	lnc-MAT2B-3:7	ENSG00000241956.5	CTC-340A15.2	NA	NA	NA	inter
LNCA_21_P0003883	4.1831183	P	3.9149227	P	1.2043006487497	0	lncRNA	TCONS_00009007	NA	NA	NA	NA	XLOC_003853	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003853), lincRNA [TCONS_00009007]"	chr4:1581913-1573436	hs|4p16.3	Agilent_HUMAN_G3V2	TCONS_00009007	TCONS_00009007	chr4	  1573436	  1581913	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39727_PI429285431	3.6159942	P	3.5597477	P	1.03975707370375	0	lncRNA	40657-1_{1..3000}	n405693|NR_002930|lncRNA|Homosapiens||RefGeneNoncode|NR_002930||7.0824000|-0.1021310	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405693|NR_002930|lncRNA|Homosapiens||RefGeneNoncode|NR_002930||7.0824000|-0.1021310	chr1	202137178	202140177	+	NA	NA	NA	NA	LGR6	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40chr1:202163118-202168577"	NA	inter
CUST_7558_PI429285431	0.92676103	A	0.90400827	A	1.01589603020438	0	lncRNA	9194-1_{1..1963}	lnc-EPS8L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EPS8L1-1:1	chr19	 55552618	 55554580	+	lnc-EPS8L1-1	lnc-EPS8L1-1:1	ENSG00000248481	ENST00000509693	RDH13	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-29.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40chr19:55555692-55563257"	NA	inter
CUST_13914_PI429285431	0.9110831	A	0.90946096	A	1.00112501412163	0	lncRNA	15561-1_{1..1947}	lnc-TNS3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNS3-2:1	chr7	 46736601	 46738547	-	lnc-TNS3-2	lnc-TNS3-2:1	XLOC_006434	linc-IGFBP3-2	NA	NA	NA	inter
LNCA_21_P0008818	0.90965176	A	0.89802825	A	1.00808934656331	0	lncRNA	TCONS_00023891	NA	NA	NA	NA	XLOC_011193	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011193), lincRNA [TCONS_00023891]"	chr15:28944691-28944750	hs|15q13.1	Agilent_HUMAN_G3V2	TCONS_00023891	TCONS_00023891	chr15	 28944691	 28944750	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10677_PI429285431	0.9147755	A	0.90890664	A	1.0040762692393	0	lncRNA	12210-1_{1..350}	lnc-CHST4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHST4-1:1	chr16	 71551508	 71551857	+	lnc-CHST4-1	lnc-CHST4-1:1	XLOC_011775	linc-CHST4	CHST4	NA	chr16:71560023-71561750	inter
CUST_16041_PI429285431	3.8632555	P	4.1602287	P	0.813958305299833	0	lncRNA	17739-1_{1..758}	lnc-CTD-2144E22.5.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2144E22.5.1-1:1	chr16	 34266742	 34267499	+	lnc-CTD-2144E22.5.1-1	lnc-CTD-2144E22.5.1-1:1	XLOC_011697	linc-ORC6-6	NA	NA	NA	inter
CUST_50318_PI429285431	0.91982794	A	1.2809174	A	0.778576410861556	0	lncRNA	54037-1_{1..367}	hg19_lincRNAsTranscripts_TCONS_l2_00029559 range=chr9:114035118-114047138 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029559 range=chr9:114035118-114047138 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	114035118	114035484	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28032_PI429285431	0.91086	A	0.9153467	A	0.996894887409925	0	lncRNA	29646-1_{1..563}	n325293|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327083|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327083|-1.2405500|-0.2908989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325293|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327083|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327083|-1.2405500|-0.2908989	chr2	 64166987	 64167549	-	NA	NA	NA	NA	VPS54	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr2:64156987-64178884"	NA	inner
CUST_25807_PI429285431	0.91015106	A	1.5312262	A	0.650186208692594	0	lncRNA	27328-1_{1..467}	lnc-JMJD7-PLA2G4B-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JMJD7-PLA2G4B-5:1	chr15	 42302030	 42302496	+	lnc-JMJD7-PLA2G4B-5	lnc-JMJD7-PLA2G4B-5:1	ENSG00000257797.1	CTD-2382E5.2	PLA2G4E	NA	chr15:42292030-42312315	inner
CUST_43725_PI429285431	13.28806	P	12.708893	P	1.49398638436267	0	lncRNA	48469-1_{1..566}	"gi|223941831|ref|NR_026911.1| Homo sapiens ribosomal protein L21 pseudogene 28 (RPL21P28), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223941831|ref|NR_026911.1| Homo sapiens ribosomal protein L21 pseudogene 28 (RPL21P28), non-coding RNA"	Chr1	212224828	212225393	-	100131205	NR_026911.1	NA	NA	NA	"hg19_refFlat_BRCA1:range=chr17:41197695-412761135'pad=0,hg19_refFlat_BRCA1:range=chr17:41197695-412761135'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90"	NA	inter
CUST_25736_PI429285431	7.5802603	P	7.9504166	P	0.773698670564213	0	lncRNA	27262-2_{3001..4554}	lnc-SENP3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SENP3-1:2	chr17	  7487696	  7489249	+	lnc-SENP3-1	lnc-SENP3-1:2	ENSG00000264772.1	RP11-186B7.4	SENP3	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.01;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr17:7474696-7475287"	NA	inner
CUST_41875_PI429285431	5.74438	P	6.6558266	P	0.53165173310957	0	lncRNA	43544-1_{1..100}	ENST00000583199 ncrna:miRNA chromosome:GRCh37:16:85339832:85339931:-1 gene:ENSG00000266307 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583199 ncrna:miRNA chromosome:GRCh37:16:85339832:85339931:-1 gene:ENSG00000266307 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 85339832	 85339931	-	ENSG00000266307	ENST00000583199	NA	NA	NA	NA	NA	inter
CUST_33950_PI429285431	4.465721	P	2.2236676	A	4.73069910011368	0	lncRNA	35490-1_{1..463}	n340751|AF086071|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3214|NULL|-0.9406760|-0.3109510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340751|AF086071|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3214|NULL|-0.9406760|-0.3109510	chr5	175808458	175808920	+	NA	NA	NA	NA	ARL10	NA	chr5:175798458-175800503	inter
CUST_6396_PI429285431	0.8984482	A	0.9050689	A	0.995421394381375	0	lncRNA	6328-1_{1..2693}	"transcript_id ""ENST00000442497.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442497.2"" | genecode_v17"	chr19	 22934985	 22937677	-	ENSG00000180081.9	ENST00000442497.2	CTC-451A6.4	CTC-451A6.4-001	ZNF99	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60chr19:22924985-22947677"	NA	inner
CUST_33988_PI429285431	1.326461	A	1.0512587	A	1.21016377093318	0	lncRNA	35525-1_{1..2236}	n340801|AJ420566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3264|NULL|-1.2131400|-0.2422226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340801|AJ420566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3264|NULL|-1.2131400|-0.2422226	chr6	  2399240	  2401475	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42014_PI429285431	3.1292264	A	2.9772031	A	1.11112667357186	0	lncRNA	43869-1_{1..62}	ENST00000580964 ncrna:miRNA chromosome:GRCh37:12:123495214:123495275:-1 gene:ENSG00000265526 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580964 ncrna:miRNA chromosome:GRCh37:12:123495214:123495275:-1 gene:ENSG00000265526 gene_biotype:miRNA transcript_biotype:miRNA	chr12	123495214	123495275	-	ENSG00000265526	ENST00000580964	NA	NA	PITPNM2	NA	chr12:123485214-123505275	inner
CUST_5871_PI429285431	0.9193915	A	1.2639908	A	0.78752667706507	0	lncRNA	5801-1_{1..2262}	"transcript_id ""ENST00000587960.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587960.1"" | genecode_v17"	chr17	 43608943	 43611204	+	ENSG00000266918.1	ENST00000587960.1	RP11-798G7.8	RP11-798G7.8-001	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00"	NA	inter
LNCA_21_P0003926	0.9117278	A	0.9002765	A	1.00796902126889	0	lncRNA	BC043537	NA	BC043537	NA	Hs.434316	XLOC_004429	NA	NA	THC2609187	NA	"BROAD Institute lincRNA (XLOC_004429), lincRNA [TCONS_00009251]"	chr5:73624106-73624165	hs|5q13.3	Agilent_HUMAN_G3V2	BC043537	BC043537	chr5	 73624106	 73624165	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40250_PI429285431	0.8961228	A	0.9027123	A	0.995442921788381	0	lncRNA	41065-1_{1..2080}	n408171|NR_028294|lncRNA|Homosapiens||RefGeneNoncode|NR_028294||5.1821300|-0.1196354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408171|NR_028294|lncRNA|Homosapiens||RefGeneNoncode|NR_028294||5.1821300|-0.1196354	chr1	 71318035	 71320114	-	NA	NA	NA	NA	PTGER3	NA	chr1:71318036-71513491	inner
CUST_40566_PI429285431	6.578387	P	7.156502	P	0.669838404976579	0	lncRNA	41322-1_{1..1033}	n409774|NR_034178|lncRNA|Homosapiens||RefGeneNoncode|NR_034178||4.2279500|-0.1831380	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409774|NR_034178|lncRNA|Homosapiens||RefGeneNoncode|NR_034178||4.2279500|-0.1831380	chr1	143915747	143916779	+	NA	NA	NA	NA	FAM72D	NA	chr1:143905747-143913143	inter
CUST_46817_PI429285431	10.510607	P	11.014706	P	0.705100593471676	0	lncRNA	50958-1_{1..1769}	"gi|296011054|ref|NR_033662.1| Homo sapiens colony stimulating factor 3 (granulocyte) (CSF3), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|296011054|ref|NR_033662.1| Homo sapiens colony stimulating factor 3 (granulocyte) (CSF3), transcript variant 5, non-coding RNA"	Chr17	 38171614	 38173382	+	1440	NR_033662.1	NA	NA	NA	NA	NA	inter
CUST_20192_PI429285431	5.2038045	P	5.5351586	P	0.794790150996785	0	lncRNA	21835-1_{1..500}	lnc-PARP10-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PARP10-1:4	chr8	145109464	145109963	-	lnc-PARP10-1	lnc-PARP10-1:4	ENSG00000178814.11	OPLAH	SPATC1	NA	chr8:145099464-145102015	inner
CUST_14543_PI429285431	0.9222958	A	0.91637224	A	1.00411433966416	0	lncRNA	16211-1_{1..922}	lnc-MRGPRX4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRGPRX4-1:1	chr11	 18234628	 18235549	+	lnc-MRGPRX4-1	lnc-MRGPRX4-1:1	XLOC_009080	linc-SAA1	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.62;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90"	NA	inter
CUST_2845_PI429285431	1.2686454	A	0.8893423	A	1.3007133885058	0	lncRNA	2828-1_{1..339}	"transcript_id ""ENST00000425228.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425228.1"" | genecode_v17"	chr7	 62840844	 62841182	-	ENSG00000230600.1	ENST00000425228.1	RP11-73B2.2	RP11-73B2.2-001	NA	NA	NA	inter
LNCA_21_P0013627	4.9974527	P	5.4497395	P	0.730883414072792	0	lncRNA	ENST00000421828	XR_108937	XR_108937	NA	NA	XLOC_l2_015148	NA	ENST00000421828	THC2524958	NA	"PREDICTED: Homo sapiens hypothetical LOC730098 (LOC730098), miscRNA [XR_108937]"	chr9:34665747-34665688	hs|9p13.3	Agilent_HUMAN_G3V2	ENST00000421828	ENST00000421828	chr9	 34665688	 34665747	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37638_PI429285431	12.278377	P	12.444475	P	0.89124995263629	0	lncRNA	38732-2_{3001..3650}	n346116|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1666|NULL|-1.4661800|-0.2933444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346116|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1666|NULL|-1.4661800|-0.2933444	chr5	  1574957	  1575606	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009259	2.9302819	A	2.5323324	A	1.31763382856115	0	lncRNA	TCONS_00025437	NA	NA	NA	NA	XLOC_012255	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012255), lincRNA [TCONS_00025437]"	chr17:53725615-53725674	hs|17q22	Agilent_HUMAN_G3V2	TCONS_00025437	TCONS_00025437	chr17	 53725615	 53725674	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33047_PI429285431	4.2460012	P	1.6040255	A	6.24185870590386	0	lncRNA	34659-2_{3001..3994}	n339737|BX641108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2183|NULL|-1.1488800|-0.3507352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339737|BX641108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2183|NULL|-1.1488800|-0.3507352	chr3	188607480	188608473	+	NA	NA	NA	NA	LPP	NA	chr3:188594480-188608460	inner
CUST_17957_PI429285431	11.338902	P	11.067942	P	1.20661046491131	0	lncRNA	19688-1_{1..275}	lnc-LMAN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LMAN1-1:1	chr18	 57056125	 57056399	-	lnc-LMAN1-1	lnc-LMAN1-1:1	XLOC_012857	linc-LMAN1-1	NA	NA	NA	inter
CUST_7731_PI429285431	3.741545	P	4.2336144	P	0.711004502015823	0	lncRNA	9362-1_{1..687}	lnc-NEDD1-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NEDD1-4:6	chr12	 97958127	 97958813	+	lnc-NEDD1-4	lnc-NEDD1-4:6	ENSG00000255794	RMST	NA	NA	NA	inter
CUST_20865_PI429285431	3.718297	P	4.640705	P	0.527627622489302	0	lncRNA	22496-1_{1..701}	lnc-AC115989.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AC115989.1.1-2:1	chr17	 19460524	 19461224	+	lnc-AC115989.1.1-2	lnc-AC115989.1.1-2:1	ENSG00000266079.1	SNORA59B	SLC47A1	NA	chr17:19450524-19471224	inner
CUST_10414_PI429285431	1.5484003	A	1.2819984	A	1.20280427445638	0	lncRNA	11941-1_{1..269}	lnc-SORCS3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SORCS3-3:1	chr10	106345115	106345383	+	lnc-SORCS3-3	lnc-SORCS3-3:1	XLOC_008599	linc-SORCS3-3	NA	NA	NA	inter
CUST_23980_PI429285431	0.9217081	A	0.919976	A	1.00120132124042	0	lncRNA	25535-1_{1..542}	lnc-IQCG-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IQCG-3:1	chr3	197766018	197766559	-	lnc-IQCG-3	lnc-IQCG-3:1	ENSG00000232832.1	LMLN-AS1	LMLN	"hg19_refFlat_LMLN:range=chr3:197687093-1977655385'pad=0,hg19_refFlat_LMLN:range=chr3:197687093-1977655385'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10chr3:197756018-197770591"	NA	inner
CUST_39010_PI429285431	1.8586469	A	2.1398425	A	0.82290876808292	0	lncRNA	39990-1_{1..1930}	n385318|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wnm.1||0.2679930|-0.3132819	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385318|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wnm.1||0.2679930|-0.3132819	chr7	157172509	157174438	+	NA	NA	NA	NA	DNAJB6	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40chr7:157162509-157184439"	NA	inner
CUST_46739_PI429285431	9.957993	P	9.996286	P	0.973806476033382	0	lncRNA	50891-1_{1..1642}	"gi|310750379|ref|NR_037146.1| Homo sapiens tumor necrosis factor (ligand) superfamily, member 12 (TNFSF12), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|310750379|ref|NR_037146.1| Homo sapiens tumor necrosis factor (ligand) superfamily, member 12 (TNFSF12), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_037146.1	NA	NA	NA	NA	NA	Unknown
CUST_29469_PI429285431	1.5149	A	2.825659	A	0.403108748822326	0	lncRNA	31227-1_{1..385}	n332884|AF086028|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066907|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066907|-1.1065100|-0.3091324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332884|AF086028|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066907|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066907|-1.1065100|-0.3091324	chr12	 56496907	 56497291	-	NA	NA	NA	NA	ERBB3	NA	chr12:56486907-56497291	inner
CUST_44498_PI429285431	1.2284551	A	1.9562153	A	0.603840655799707	0	lncRNA	49098-1_{1..560}	"gi|397139084|ref|XR_158784.1| PREDICTED: Homo sapiens ROPN1L antisense RNA 1 (ROPN1L-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139084|ref|XR_158784.1| PREDICTED: Homo sapiens ROPN1L antisense RNA 1 (ROPN1L-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_158784.1	NA	NA	NA	NA	NA	Unknown
CUST_48103_PI429285431	4.4094133	P	4.1684294	P	1.18179835838155	0	lncRNA	51977-1_{1..3000}	"gi|310115407|ref|XR_113100.1| PREDICTED: Homo sapiens uncharacterized LOC100131395 (LOC100131395), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310115407|ref|XR_113100.1| PREDICTED: Homo sapiens uncharacterized LOC100131395 (LOC100131395), misc_RNA"	NA	NA	NA	NA	NA	XR_113100.1	NA	NA	NA	NA	NA	Unknown
CUST_26129_PI429285431	2.738354	A	2.9565794	A	0.859622172358964	0	lncRNA	27640-1_{1..404}	lnc-TFEB-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TFEB-1:5	chr6	 41513738	 41514141	-	lnc-TFEB-1	lnc-TFEB-1:5	ENSG00000234753.1	RP11-328M4.2	FOXP4	NA	chr6:41514164-41523812	inter
CUST_43745_PI429285431	3.849979	P	3.9067495	P	0.961413855323916	0	lncRNA	48487-1_{1..776}	"gi|299782447|ref|NR_033826.1| Homo sapiens small nuclear ribonucleoprotein D2 pseudogene 2 (SNRPD2P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299782447|ref|NR_033826.1| Homo sapiens small nuclear ribonucleoprotein D2 pseudogene 2 (SNRPD2P2), non-coding RNA"	Chr1	231611508	231612283	-	645339	NR_033826.1	NA	NA	NA	NA	NA	inter
CUST_5204_PI429285431	0.90381384	A	1.0955819	A	0.875532076408721	0	lncRNA	5144-2_{3001..3511}	"transcript_id ""ENST00000568092.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568092.1"" | genecode_v17"	chr15	 62570054	 62570564	+	ENSG00000261296.1	ENST00000568092.1	RP11-299H22.6	RP11-299H22.6-001	NA	NA	NA	inter
CUST_2092_PI429285431	4.298635	P	4.359379	P	0.958769552913073	0	lncRNA	2083-1_{1..867}	"transcript_id ""ENST00000511821.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511821.1"" | genecode_v17"	chr5	 17354019	 17354885	+	ENSG00000248223.1	ENST00000511821.1	CTD-2139B15.2	CTD-2139B15.2-001	NA	"hg19_refFlat_FTH1:range=chr11:61732199-617348975'pad=0,hg19_refFlat_FTH1:range=chr11:61732199-617348975'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60"	NA	inter
CUST_6958_PI429285431	6.8713613	P	6.499758	P	1.29378985024871	0	lncRNA	6906-1_{1..517}	"transcript_id ""ENST00000438113.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438113.1"" | genecode_v17"	chr22	 27299303	 27299819	+	ENSG00000235271.1	ENST00000438113.1	RP1-90L6.3	RP1-90L6.3-001	NA	NA	NA	inter
LNCA_21_P0010963	2.9764967	A	2.963198	A	1.00926057261442	0	lncRNA	TCONS_l2_00004356	NA	NA	NA	NA	XLOC_l2_002207	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002207), lincRNA [TCONS_l2_00004356]"	chr11:3656627-3656686	hs|11p15.4	Agilent_HUMAN_G3V2	TCONS_l2_00004356	TCONS_l2_00004356	chr11	  3656627	  3656686	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45595_PI429285431	9.92528	P	10.062015	P	0.909575310891219	0	lncRNA	49984-1_{1..1363}	"gi|395132480|ref|NR_073029.1| Homo sapiens translocase of inner mitochondrial membrane 23 homolog (yeast) (TIMM23), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|395132480|ref|NR_073029.1| Homo sapiens translocase of inner mitochondrial membrane 23 homolog (yeast) (TIMM23), transcript variant 2, non-coding RNA"	NW_003871068.1	   243568	   244930	+	100287932	NR_073029.1	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40"	NA	Unknown
LNCA_21_P0010074	4.3347764	P	3.86025	P	1.38946202001061	0	lncRNA	TCONS_00028472	NA	NA	NA	NA	XLOC_013845	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013845), lincRNA [TCONS_00028472]"	chr20:62110378-62110087	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028472	TCONS_00028472	chr20	 62110087	 62110378	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2532_PI429285431	5.46244	P	5.5123253	P	0.966013127761843	0	lncRNA	2520-1_{1..2022}	"transcript_id ""ENST00000562471.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562471.1"" | genecode_v17"	chr6	 42059976	 42061997	-	ENSG00000261068.1	ENST00000562471.1	RP11-7K24.3	RP11-7K24.3-001	C6orf132	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_IFNAR2:range=chr21:34614228-346350215'pad=0,hg19_refFlat_IFNAR2:range=chr21:34614228-346350215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-21.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10chr6:42068857-42071997"	NA	inter
CUST_28962_PI429285431	0.9268161	A	0.9010966	A	1.01798725551593	0	lncRNA	30683-1_{1..439}	n326393|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000101760|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000101760|-1.3084800|-0.2541596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326393|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000101760|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000101760|-1.3084800|-0.2541596	chr1	145963299	145963737	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46979_PI429285431	3.1641126	A	3.728269	P	0.676350789566098	0	lncRNA	51081-1_{1..1620}	"gi|341915830|ref|XR_132648.1| PREDICTED: Homo sapiens uncharacterized LOC646778 (LOC646778), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915830|ref|XR_132648.1| PREDICTED: Homo sapiens uncharacterized LOC646778 (LOC646778), misc_RNA"	NA	NA	NA	NA	NA	XR_132648.1	NA	NA	NA	NA	NA	Unknown
CUST_16154_PI429285431	1.0076898	A	1.6531323	A	0.639296677004524	0	lncRNA	17860-1_{1..374}	lnc-OTOL1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OTOL1-4:1	chr3	164137191	164137564	+	lnc-OTOL1-4	lnc-OTOL1-4:1	XLOC_002899	linc-SERPINI1-5	NA	NA	NA	inter
CUST_9025_PI429285431	0.92225945	A	0.9078601	A	1.01003084385219	0	lncRNA	10552-1_{1..2245}	lnc-LRRC42-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC42-1:1	chr1	 54451393	 54453637	+	lnc-LRRC42-1	lnc-LRRC42-1:1	ENSG00000245332	XLOC_000199	LDLRAD1	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr1:54441393-54462234"	NA	inter
CUST_32403_PI429285431	1.8121198	A	1.1141651	A	1.62220337387041	0	lncRNA	34079-1_{1..2622}	n338996|AL833164|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1425|NULL|0.0465088|-0.3864288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338996|AL833164|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1425|NULL|0.0465088|-0.3864288	chr2	165685629	165688250	-	NA	NA	NA	NA	COBLL1	"hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00chr2:165675629-165697928"	NA	inner
CUST_38150_PI429285431	3.198906	P	3.1859694	P	1.00900729150891	0	lncRNA	39222-1_{1..1385}	n381354|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hor.1||-1.1840000|-0.2407793	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381354|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hor.1||-1.1840000|-0.2407793	chr1	224622613	224623997	+	NA	NA	NA	NA	WDR26	NA	chr1:224612613-224622001	inter
CUST_17490_PI429285431	0.92958754	A	0.92941654	A	1.00011853519262	0	lncRNA	19217-1_{1..774}	lnc-GJA5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GJA5-2:1	chr1	147283214	147283987	-	lnc-GJA5-2	lnc-GJA5-2:1	XLOC_001007	linc-GJA5	NA	NA	NA	inter
CUST_9630_PI429285431	2.2007165	A	1.5797585	A	1.53789605910923	0	lncRNA	11147-1_{1..316}	lnc-AZI2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AZI2-1:1	chr3	 28182089	 28182404	-	lnc-AZI2-1	lnc-AZI2-1:1	XLOC_003073	linc-EOMES-2	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60"	NA	inter
CUST_7209_PI429285431	0.9111844	A	1.0958836	A	0.879832500707762	0	lncRNA	7634-1_{1..322}	"transcript_id ""ENST00000516541.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516541.1"" | genecode_v17"	chr4	157907524	157907845	-	ENSG00000252350.1	ENST00000516541.1	RPPH1-3P	RPPH1-3P-201	NA	NA	NA	inter
CUST_28404_PI429285431	4.330785	P	4.7149644	P	0.766214694919374	0	lncRNA	30062-1_{1..673}	n325725|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045101|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045101|-1.2510200|-0.6215369	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325725|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045101|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045101|-1.2510200|-0.6215369	chr13	 51961128	 51961800	+	NA	NA	NA	NA	INTS6	NA	chr13:51951128-51981280	inner
LNCA_21_P0004278	0.9104469	A	0.9184343	A	0.994478854069981	0	lncRNA	ENST00000511323	NA	NA	NA	NA	XLOC_004471	NA	ENST00000511323	NA	NA	"BROAD Institute lincRNA (XLOC_004471), lincRNA [TCONS_00009461]"	chr5:91628324-91628383	hs|5q14.3	Agilent_HUMAN_G3V2	ENST00000511323	ENST00000511323	chr5	 91628324	 91628383	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007920	0.9118074	A	0.919268	A	0.994842054265852	0	lncRNA	ENST00000422082	NA	NA	NA	NA	XLOC_010287	NA	ENST00000422082	NA	NA	"BROAD Institute lincRNA (XLOC_010287), lincRNA [TCONS_00021524]"	chr13:19497843-19497902	hs|13q11	Agilent_HUMAN_G3V2	ENST00000422082	ENST00000422082	chr13	 19497843	 19497902	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43401_PI429285431	2.3700638	A	2.377232	A	0.995043705542694	0	lncRNA	48214-1_{1..1863}	"gi|254826703|ref|NR_027087.2| Homo sapiens uncharacterized LOC284632 (LOC284632), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|254826703|ref|NR_027087.2| Homo sapiens uncharacterized LOC284632 (LOC284632), non-coding RNA"	Chr1	 24526730	 24528592	+	284632	NR_027087.2	NA	NA	NA	NA	NA	inter
CUST_18103_PI429285431	0.9145749	A	0.9206068	A	0.995827733710588	0	lncRNA	19837-1_{1..422}	lnc-SOX1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOX1-3:2	chr13	112855110	112855531	+	lnc-SOX1-3	lnc-SOX1-3:2	XLOC_010505	linc-C13orf28-3	NA	NA	NA	inter
CUST_17255_PI429285431	0.91090006	A	0.90544873	A	1.00378572183062	0	lncRNA	18973-1_{1..982}	lnc-NUDCD2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NUDCD2-5:2	chr5	163894353	163895334	-	lnc-NUDCD2-5	lnc-NUDCD2-5:2	XLOC_005070	linc-NUDCD2-1	NA	NA	NA	inter
CUST_1695_PI429285431	0.8979007	A	1.3296523	A	0.741361139813301	0	lncRNA	1678-1_{1..657}	"transcript_id ""ENST00000506195.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506195.1"" | genecode_v17"	chr4	 11742572	 11743228	-	ENSG00000248300.1	ENST00000506195.1	RP11-74M11.2	RP11-74M11.2-001	NA	NA	NA	inter
CUST_2085_PI429285431	3.6825404	P	3.8507686	P	0.889934955601352	0	lncRNA	2076-1_{1..2130}	"transcript_id ""ENST00000515243.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515243.1"" | genecode_v17"	chr5	 10493639	 10495768	-	ENSG00000249396.1	ENST00000515243.1	RP11-1C1.4	RP11-1C1.4-001	NA	NA	NA	inter
LNCA_21_P0004570	3.0480864	P	0.9237811	A	4.35993099039031	0	lncRNA	TCONS_00011012	NA	NA	NA	NA	XLOC_004945	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004945), lincRNA [TCONS_00011012]"	chr5:103216404-103216345	hs|5q21.2	Agilent_HUMAN_G3V2	TCONS_00011012	TCONS_00011012	chr5	103216345	103216404	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3719_PI429285431	0.9026816	A	0.90518904	A	0.998263484524331	0	lncRNA	3688-1_{1..757}	"transcript_id ""ENST00000601926.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601926.1"" | genecode_v17"	chr10	 67375491	 67376247	+	ENSG00000228065.5	ENST00000601926.1	RP11-222A11.1	RP11-222A11.1-009	NA	NA	NA	inter
CUST_31584_PI429285431	0.90545046	A	0.91312385	A	0.994695331068136	0	lncRNA	33341-1_{1..1786}	n338089|BC041977|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|476|NULL|-1.0809900|-0.1685354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338089|BC041977|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|476|NULL|-1.0809900|-0.1685354	chr1	 94312729	 94314514	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9678_PI429285431	1.7441301	A	1.5840976	A	1.11731230779968	0	lncRNA	11195-1_{1..456}	lnc-TNFSF15-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFSF15-2:1	chr9	117424876	117425331	-	lnc-TNFSF15-2	lnc-TNFSF15-2:1	XLOC_007832	linc-DFNB31-1	LOC100505478	NA	chr9:117428714-117435007	inter
CUST_18256_PI429285431	3.1198788	A	3.796497	P	0.625630087144666	0	lncRNA	19990-2_{3001..4225}	lnc-RP11-195B21.3.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-RP11-195B21.3.1-2:1	chr9	 68415089	 68416313	+	lnc-RP11-195B21.3.1-2	lnc-RP11-195B21.3.1-2:1	ENSG00000203508	CR786580.1	NA	NA	NA	inter
CUST_14494_PI429285431	1.1437984	A	0.89290804	A	1.1899412613126	0	lncRNA	16161-1_{1..1869}	lnc-HYOU1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HYOU1-1:1	chr11	118938208	118940076	-	lnc-HYOU1-1	lnc-HYOU1-1:1	XLOC_009576	linc-HYOU1	VPS11	"hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20chr11:118938493-118948411"	NA	inter
CUST_36637_PI429285431	5.6099234	P	5.5777183	P	1.02257389396971	0	lncRNA	37827-4_{9001..9308}	n345130|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_679|NULL|-1.3165200|-0.3125917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345130|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_679|NULL|-1.3165200|-0.3125917	chr11	122020860	122021167	+	NA	NA	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
LNCA_21_P0014737	0.92470706	A	0.9244982	A	1.00014478119992	0	lncRNA	XR_113160	XR_113160	XR_113160	NA	Hs.552136	LOC100506861	uncharacterized LOC100506861	ENST00000521923	THC2708672	NA	"PREDICTED: Homo sapiens hypothetical LOC100506861 (LOC100506861), miscRNA [XR_113160]"	chr8:105907856-105907915	hs|8q22.3	Agilent_HUMAN_G3V2	XR_113160	XR_113160	chr8	105907856	105907915	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003538	0.92501014	A	1.6100303	A	0.621997134895609	0	lncRNA	ENST00000503325	NA	NA	NA	NA	XLOC_004169	NA	ENST00000503325	NA	NA	"BROAD Institute lincRNA (XLOC_004169), lincRNA [TCONS_00007901]"	chr4:174911876-174907910	hs|4q34.1	Agilent_HUMAN_G3V2	ENST00000503325	ENST00000503325	chr4	174907910	174911876	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10097_PI429285431	0.9055234	A	1.1076062	A	0.869294667588858	0	lncRNA	11622-2_{3001..4656}	lnc-TPM4-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TPM4-2:3	chr19	 16138931	 16140586	+	lnc-TPM4-2	lnc-TPM4-2:3	XLOC_012983	linc-TPM4-2	NA	"hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10"	NA	inter
CUST_983_PI429285431	3.3559918	A	3.4071715	P	0.965146800100039	0	lncRNA	972-1_{1..545}	"transcript_id ""ENST00000447761.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447761.1"" | genecode_v17"	chr2	104482204	104482748	-	ENSG00000236141.1	ENST00000447761.1	AC013727.2	AC013727.2-001	NA	NA	NA	inter
CUST_21320_PI429285431	2.7296941	A	2.373154	A	1.2803516478336	0	lncRNA	22943-1_{1..515}	lnc-C1orf177-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C1orf177-2:4	chr1	 55354173	 55354687	+	lnc-C1orf177-2	lnc-C1orf177-2:4	ENSG00000233203.2	RP11-67L3.4	DHCR24	NA	chr1:55344173-55352921	inter
CUST_7906_PI429285431	2.7673614	A	3.5206833	P	0.593236018820839	0	lncRNA	9521-1_{1..1328}	lnc-FBXO8-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXO8-4:1	chr4	175141465	175142792	-	lnc-FBXO8-4	lnc-FBXO8-4:1	ENSG00000248174	RP11-148L24.1	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60"	NA	inter
CUST_29891_PI429285431	1.523891	A	1.4571791	A	1.0473269595224	0	lncRNA	31654-1_{1..282}	n333962|M14189|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194306_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194306_03|-0.4806570|-0.2955180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333962|M14189|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194306_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194306_03|-0.4806570|-0.2955180	chr6	  4078217	  4078498	-	NA	NA	NA	NA	C6orf201	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-20.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-17.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20chr6:4079440-4088499"	NA	inner
CUST_12877_PI429285431	1.1045611	A	0.9037118	A	1.14937478120039	0	lncRNA	14505-1_{1..585}	lnc-PRKAG2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRKAG2-2:1	chr7	151652014	151652598	-	lnc-PRKAG2-2	lnc-PRKAG2-2:1	XLOC_006652	linc-PRKAG2-2	GALNTL5	NA	chr7:151653464-151662070	inter
CUST_27156_PI429285431	4.3582263	P	4.5509944	P	0.87492538983781	0	lncRNA	28692-1_{1..758}	n324280|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043281|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043281|-1.0505500|-0.2163452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324280|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043281|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043281|-1.0505500|-0.2163452	chr6	170876209	170876966	+	NA	NA	NA	NA	PDCD2	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-61.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.70chr6:170884660-170889501"	NA	inner
CUST_4934_PI429285431	1.1973081	A	1.1575409	A	1.02794793879883	0	lncRNA	4877-1_{1..547}	"transcript_id ""ENST00000554205.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554205.1"" | genecode_v17"	chr14	 88034525	 88035071	+	ENSG00000259028.1	ENST00000554205.1	RP11-325D8.1	RP11-325D8.1-001	NA	NA	NA	inter
CUST_19245_PI429285431	0.89308596	A	0.8948806	A	0.998756823728536	0	lncRNA	20914-1_{1..339}	lnc-EMILIN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-EMILIN1-1:1	chr2	 27284514	 27284852	+	lnc-EMILIN1-1	lnc-EMILIN1-1:1	ENSG00000229122.1	AGBL5-IT1	AGBL5	NA	chr2:27274514-27293490	inner
CUST_50200_PI429285431	1.6585413	A	2.1914966	A	0.691137516915502	0	lncRNA	53925-1_{1..414}	hg19_lincRNAsTranscripts_TCONS_l2_00029282 range=chr9:42853540-42858460 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029282 range=chr9:42853540-42858460 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 42853540	 42853953	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28683_PI429285431	1.6770753	A	2.1832561	A	0.704083871424801	0	lncRNA	30381-1_{1..494}	n326069|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046735|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046735|-1.1032500|-0.1955850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326069|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046735|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046735|-1.1032500|-0.1955850	chr10	  9357801	  9358294	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23548_PI429285431	0.8966707	A	0.9039654	A	0.994956460832706	0	lncRNA	25115-1_{1..526}	lnc-ASB2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASB2-2:4	chr14	 94392622	 94393147	-	lnc-ASB2-2	lnc-ASB2-2:4	ENSG00000258584.1	FAM181A-AS1	FAM181A	"hg19_refFlat_FAM181A:range=chr14:94391618-943955105'pad=0,hg19_refFlat_FAM181A:range=chr14:94391618-943955105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80chr14:94385240-94395954"	NA	inter
CUST_35103_PI429285431	5.327361	P	2.83442	A	5.62924328484161	0	lncRNA	36510-1_{1..1597}	n342073|AJ420536|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4554|NULL|-1.2465000|-0.4347194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342073|AJ420536|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4554|NULL|-1.2465000|-0.4347194	chr6	 83078979	 83080575	+	NA	NA	NA	NA	TPBG	NA	chr6:83072923-83077134	inter
CUST_33917_PI429285431	0.92097133	A	0.91139984	A	1.00665650803044	0	lncRNA	35459-1_{1..2028}	n340712|BC033376|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3175|NULL|-1.0606800|-0.2975556	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n340712|BC033376|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3175|NULL|-1.0606800|-0.2975556	chr5	158875563	158877590	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4014_PI429285431	2.9756258	A	3.6132329	P	0.64277819752503	0	lncRNA	3975-1_{1..375}	"transcript_id ""ENST00000603012.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603012.1"" | genecode_v17"	chr11	 74921884	 74922258	-	ENSG00000255136.2	ENST00000603012.1	CTD-2562J17.4	CTD-2562J17.4-003	SLCO2B1	NA	chr11:74911884-74917445	inner
CUST_29904_PI429285431	0.9062354	A	0.9003412	A	1.00409390534075	0	lncRNA	31667-1_{1..273}	n334005|M19668|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194692|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194692|-0.8919420|-0.0934052	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334005|M19668|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194692|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194692|-0.8919420|-0.0934052	chr2	179489174	179489446	+	NA	NA	NA	NA	TTN	"hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60chr2:179479174-179499447"	NA	inter
CUST_20189_PI429285431	8.192311	P	8.40581	P	0.862442990784465	0	lncRNA	21832-1_{1..520}	lnc-BOLA2B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BOLA2B-1:1	chr16	 30196153	 30196672	-	lnc-BOLA2B-1	lnc-BOLA2B-1:1	ENSG00000261416.1	RP11-455F5.5	CORO1A	NA	chr16:30194731-30200397	inner
CUST_36078_PI429285431	2.008112	A	0.9151741	A	2.13307974246459	0	lncRNA	37383-1_{1..1207}	n344667|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_216|NULL|-1.3115800|-0.2927293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344667|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_216|NULL|-1.3115800|-0.2927293	chr6	138925153	138926359	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34339_PI429285431	0.9068242	A	0.89957327	A	1.00503861301753	0	lncRNA	35832-1_{1..1722}	n341206|BC046494|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3674|NULL|-1.1697300|-0.3725597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341206|BC046494|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3674|NULL|-1.1697300|-0.3725597	chr7	 25397858	 25399579	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22214_PI429285431	0.9135901	A	0.9193384	A	0.996023509323138	0	lncRNA	23814-1_{1..489}	lnc-PIRT-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PIRT-1:5	chr17	 10701124	 10701612	-	lnc-PIRT-1	lnc-PIRT-1:5	ENSG00000263429.1	AC002347.2	NA	NA	NA	inter
CUST_1708_PI429285431	1.1520504	A	0.92253107	A	1.17244425497124	0	lncRNA	1692-1_{1..591}	"transcript_id ""ENST00000514401.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514401.1"" | genecode_v17"	chr4	 14392063	 14392653	+	ENSG00000248425.1	ENST00000514401.1	AC006296.2	AC006296.2-001	NA	NA	NA	inter
CUST_28986_PI429285431	1.6963475	A	1.2225556	A	1.38875480186895	0	lncRNA	30707-1_{1..461}	n326467|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097630|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097630|-0.9687260|-0.3160167	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326467|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097630|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097630|-0.9687260|-0.3160167	chr1	116797179	116797639	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47978_PI429285431	0.9130178	A	0.91164446	A	1.00095237997502	0	lncRNA	51868-1_{1..444}	"gi|410172846|ref|XR_172019.1| PREDICTED: Homo sapiens uncharacterized LOC101060548 (LOC101060548), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172846|ref|XR_172019.1| PREDICTED: Homo sapiens uncharacterized LOC101060548 (LOC101060548), misc_RNA"	NA	NA	NA	NA	NA	XR_172019.1	NA	NA	NA	NA	NA	Unknown
CUST_4553_PI429285431	1.9687504	A	0.9057559	A	2.08926356079397	0	lncRNA	4502-1_{1..431}	"transcript_id ""ENST00000455848.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455848.1"" | genecode_v17"	chr13	 20676840	 20677270	+	ENSG00000236076.1	ENST00000455848.1	RP11-264J4.5	RP11-264J4.5-001	NA	NA	NA	inter
CUST_2202_PI429285431	0.9069749	A	1.053223	A	0.903597321924264	0	lncRNA	2194-1_{1..577}	"transcript_id ""ENST00000511395.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511395.1"" | genecode_v17"	chr5	 73379893	 73380469	-	ENSG00000248474.1	ENST00000511395.1	CTD-2292M14.1	CTD-2292M14.1-001	NA	NA	NA	inter
CUST_18099_PI429285431	1.8359365	A	1.053383	A	1.72017280217939	0	lncRNA	19834-1_{1..1009}	lnc-MEX3B-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MEX3B-4:3	chr15	 81954341	 81955349	-	lnc-MEX3B-4	lnc-MEX3B-4:3	XLOC_011548	linc-TMC3-2	NA	NA	NA	inter
CUST_25684_PI429285431	0.91554785	A	0.9157561	A	0.999855662517305	0	lncRNA	27213-1_{1..2568}	lnc-TM4SF20-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TM4SF20-1:3	chr2	228189834	228192401	-	lnc-TM4SF20-1	lnc-TM4SF20-1:3	ENSG00000236432.2	AC097662.2	MFF	NA	chr2:228192228-228199880	inter
CUST_1994_PI429285431	0.90387034	A	0.9071423	A	0.997734620006219	0	lncRNA	1985-1_{1..758}	"transcript_id ""ENST00000514736.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514736.1"" | genecode_v17"	chr4	178824538	178825295	-	ENSG00000251504.1	ENST00000514736.1	RP11-162G9.1	RP11-162G9.1-002	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.01;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80"	NA	inter
CUST_13550_PI429285431	1.1722013	A	0.8868293	A	1.21872447218462	0	lncRNA	15191-1_{1..1313}	lnc-ABCA1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ABCA1-1:2	chr9	107753967	107755279	-	lnc-ABCA1-1	lnc-ABCA1-1:2	XLOC_007814	linc-ABCA1-1	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30"	NA	inter
CUST_299_PI429285431	0.90629137	A	0.91214305	A	0.995952139270345	0	lncRNA	291-1_{1..338}	"transcript_id ""ENST00000419658.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419658.1"" | genecode_v17"	chr1	 83373245	 83373582	+	ENSG00000230817.1	ENST00000419658.1	RP4-601K24.1	RP4-601K24.1-002	NA	NA	NA	inter
CUST_35752_PI429285431	2.3525343	A	2.5473194	A	0.87370303069407	0	lncRNA	37172-1_{1..1785}	n342931|AK054948|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5440|NULL|0.2490500|-0.2633212	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342931|AK054948|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5440|NULL|0.2490500|-0.2633212	chr6	166801623	166803407	+	NA	NA	NA	NA	BRP44L	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr6:166791623-166796486"	NA	inter
LNCA_21_P0012925	2.7348597	A	2.585596	A	1.10900333193641	0	lncRNA	THC2626473	NA	NA	NA	NA	XLOC_l2_012210	NA	NA	THC2626473	NA	"BROAD Institute lincRNA (XLOC_l2_012210), lincRNA [TCONS_l2_00023087]"	NA	NA	Agilent_HUMAN_G3V2	THC2626473	THC2626473	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5438_PI429285431	7.228091	P	7.319665	P	0.938498276017418	0	lncRNA	5372-1_{1..677}	"transcript_id ""ENST00000547549.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547549.1"" | genecode_v17"	chr16	 16394007	 16394683	+	ENSG00000257381.1	ENST00000547549.1	MIR3179-2	MIR3179-2-001	NOMO3	NA	chr16:16384007-16388668	inter
CUST_27786_PI429285431	5.677603	P	5.813267	P	0.910250794487583	0	lncRNA	29371-1_{1..271}	n325012|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078482|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078482|-0.8845760|-0.1364127	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325012|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078482|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078482|-0.8845760|-0.1364127	chr20	 26061522	 26061792	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20633_PI429285431	0.8975286	A	0.89406157	A	1.00240605197789	0	lncRNA	22272-1_{1..633}	lnc-PBX3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PBX3-2:1	chr9	128335174	128335806	+	lnc-PBX3-2	lnc-PBX3-2:1	ENSG00000227068.1	RP11-12A16.3	MAPKAP1	"hg19_refFlat_CROT:range=chr7:86978385-870279605'pad=0,hg19_refFlat_CROT:range=chr7:86978385-870279605'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_HHLA3:range=chr1:70820635-708322015'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708322015'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80chr9:128325174-128345302"	NA	inner
CUST_4159_PI429285431	0.9114226	A	0.9143573	A	0.997967888509222	0	lncRNA	4117-1_{1..224}	"transcript_id ""ENST00000538219.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000538219.1"" | genecode_v17"	chr12	  9399093	  9399316	+	ENSG00000256427.1	ENST00000538219.1	RP11-118B22.4	RP11-118B22.4-001	NA	NA	NA	inter
CUST_4155_PI429285431	5.2486343	P	5.69051	P	0.736176856020541	0	lncRNA	4113-1_{1..451}	"transcript_id ""ENST00000536034.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536034.1"" | genecode_v17"	chr12	  8388526	  8388976	+	ENSG00000215241.3	ENST00000536034.1	RP11-266K4.9	RP11-266K4.9-003	FAM90A1	NA	chr12:8378526-8380214	inter
CUST_14143_PI429285431	0.9206507	A	0.9167573	A	1.00270234399954	0	lncRNA	15794-1_{1..796}	lnc-CCR8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCR8-1:1	chr3	 39300093	 39300888	+	lnc-CCR8-1	lnc-CCR8-1:1	XLOC_002618	linc-CCR8-1	CX3CR1	NA	chr3:39304985-39310798	inter
CUST_11332_PI429285431	8.828511	P	8.556909	P	1.20714752664684	0	lncRNA	12895-1_{1..502}	lnc-C9orf152-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf152-1:1	chr9	112937946	112938447	-	lnc-C9orf152-1	lnc-C9orf152-1:1	XLOC_007827	linc-PTPN3	PALM2-AKAP2	NA	chr9:112927946-112934792	inter
CUST_18235_PI429285431	3.6919284	P	3.8951888	P	0.86858539522348	0	lncRNA	19969-1_{1..563}	lnc-GTF2F2-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2F2-2:11	chr13	 45952665	 45953227	+	lnc-GTF2F2-2	lnc-GTF2F2-2:11	ENSG00000170919	XXyac-R12DG2.2	NA	NA	NA	inter
CUST_28199_PI429285431	0.91222006	A	1.1939278	A	0.822616696862432	0	lncRNA	29828-1_{1..2344}	n325481|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322597|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322597|-0.4317090|-0.1672497	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325481|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322597|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322597|-0.4317090|-0.1672497	chr2	  2877826	  2880169	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9868_PI429285431	0.90631163	A	1.041713	A	0.910416512757913	0	lncRNA	11391-1_{1..447}	lnc-SPCS3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPCS3-1:1	chr4	177371731	177372177	+	lnc-SPCS3-1	lnc-SPCS3-1:1	XLOC_003791	linc-NEIL3-3	NA	NA	NA	inter
CUST_23267_PI429285431	1.0636765	A	1.7250899	A	0.632258573391834	0	lncRNA	24838-2_{3001..3360}	lnc-HADH-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HADH-1:5	chr4	109097575	109097934	+	lnc-HADH-1	lnc-HADH-1:5	ENSG00000232021.2	LEF1-AS1	LEF1	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr4:109084575-109090112"	NA	inter
CUST_258_PI429201921	1.3467941	A	1.4948106	A	0.902490405685182	0	lncRNA	191-2_{3001..6000}	TC17002111.hg.1	TCONS_l2_00011533-XLOC_l2_005698 // Broad TUCP // linc-CDRT15L2-3 chr17:+:20328041-20334520 // chr17 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr17:+:20328041-20334520	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00011533-XLOC_l2_005698	linc-CDRT15L2-3	chr17	 20328041	 20334520	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44479_PI429285431	2.4655714	A	1.2727096	A	2.28605767215274	0	lncRNA	49082-1_{1..2533}	"gi|397139092|ref|XR_158789.1| PREDICTED: Homo sapiens uncharacterized LOC100996452 (LOC100996452), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139092|ref|XR_158789.1| PREDICTED: Homo sapiens uncharacterized LOC100996452 (LOC100996452), misc_RNA"	NA	NA	NA	NA	NA	XR_158789.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014938	9.62615	P	8.979483	P	1.56554719431637	0	lncRNA	XR_133412	XR_133412	XR_133412	NA	NA	LOC100505813	uncharacterized LOC100505813	NA	THC2498688	NA	"PREDICTED: Homo sapiens hypothetical LOC100505813, transcript variant 3 (LOC100505813), miscRNA [XR_133412]"	chr5:151042535-151042594	hs|5q33.1	Agilent_HUMAN_G3V2	XR_133412	XR_133412	chr5	151042535	151042594	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012174	13.54118	P	13.174019	P	1.28981218140264	0	lncRNA	TCONS_l2_00017004	NA	NA	NA	NA	XLOC_l2_009029	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009029), lincRNA [TCONS_l2_00017004]"	chr21:30595041-30595100	hs|21q21.3	Agilent_HUMAN_G3V2	TCONS_l2_00017004	TCONS_l2_00017004	chr21	 30595041	 30595100	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011051	6.673337	P	6.830003	P	0.897095823316029	0	lncRNA	ENST00000551082	NA	NA	NA	NA	XLOC_l2_003053	NA	ENST00000551082	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003053), lincRNA [TCONS_l2_00005764]"	chr12:76964495-77009090	hs|12q21.2	Agilent_HUMAN_G3V2	ENST00000551082	ENST00000551082	chr12	 76964495	 77009090	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012553	0.91840816	A	0.9067528	A	1.00811160213306	0	lncRNA	ENST00000489012	NA	NA	NA	NA	XLOC_l2_010415	NA	ENST00000489012	THC2599402	NA	"BROAD Institute lincRNA (XLOC_l2_010415), lincRNA [TCONS_l2_00020246]"	chr3:162925515-162925456	hs|3q26.1	Agilent_HUMAN_G3V2	ENST00000489012	ENST00000489012	chr3	162925456	162925515	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3342_PI429285431	0.8886752	A	0.8875264	A	1.00079660460207	0	lncRNA	3320-1_{1..552}	"transcript_id ""ENST00000517640.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517640.1"" | genecode_v17"	chr8	140126436	140126987	-	ENSG00000253783.1	ENST00000517640.1	CTD-2534J5.1	CTD-2534J5.1-001	NA	NA	NA	inter
CUST_12906_PI429285431	10.048508	P	9.742985	P	1.23586657730707	0	lncRNA	14535-1_{1..355}	lnc-HTR2C-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HTR2C-1:2	chrX	113220759	113221113	+	lnc-HTR2C-1	lnc-HTR2C-1:2	XLOC_008047	linc-HTR2C	NA	NA	NA	inter
CUST_45697_PI429285431	1.1859212	A	0.8866517	A	1.23052118853552	0	lncRNA	50068-2_{3001..5397}	"gi|374349253|ref|NR_046231.1| Homo sapiens uncharacterized LOC399829 (LOC399829), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|374349253|ref|NR_046231.1| Homo sapiens uncharacterized LOC399829 (LOC399829), non-coding RNA"	Chr10	134782038	134784434	+	399829	NR_046231.1	NA	NA	NA	NA	NA	inter
CUST_7203_PI429285431	0.9092232	A	0.9086878	A	1.00037117987068	0	lncRNA	7598-1_{1..305}	"transcript_id ""ENST00000516278.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516278.1"" | genecode_v17"	chr4	 91291274	 91291578	+	ENSG00000252087.1	ENST00000516278.1	RN7SKP248	RN7SKP248-201	FAM190A	NA	chr4:91281274-91301578	inner
CUST_18011_PI429285431	2.9427178	A	3.0810037	A	0.908598041024749	0	lncRNA	19744-1_{1..277}	lnc-ACTR3C-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACTR3C-2:2	chr7	149917334	149917610	-	lnc-ACTR3C-2	lnc-ACTR3C-2:2	XLOC_006644	linc-ZNF467-2	NA	NA	NA	inter
CUST_38388_PI429285431	1.0978048	A	1.7504032	A	0.636133557895032	0	lncRNA	39426-1_{1..1098}	n382295|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ysx.1||1.1775200|-0.1886854	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382295|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ysx.1||1.1775200|-0.1886854	chr14	106829592	106830689	-	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106843706	inter
CUST_19546_PI429285431	2.00843	A	2.6977344	A	0.620152786534462	0	lncRNA	21202-1_{1..538}	lnc-C1orf95-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf95-1:1	chr1	226863815	226864352	+	lnc-C1orf95-1	lnc-C1orf95-1:1	ENSG00000228548.1	ITPKB-AS1	ITPKB	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10chr1:226853815-226874046"	NA	inner
CUST_21141_PI429285431	1.8725119	A	1.1133788	A	1.6924733300159	0	lncRNA	22766-1_{1..565}	lnc-STARD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STARD4-1:1	chr5	110637909	110638473	-	lnc-STARD4-1	lnc-STARD4-1:1	ENSG00000248268.1	CTC-499J9.1	CAMK4	NA	chr5:110627909-110648265	inner
CUST_28974_PI429285431	4.0506806	P	4.2358704	P	0.879533357487175	0	lncRNA	30696-1_{1..496}	n326456|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000036733|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000036733|-1.3430500|-0.3273657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326456|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000036733|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000036733|-1.3430500|-0.3273657	chr1	120868445	120868940	+	NA	NA	NA	NA	LOC100132314	NA	chr1:120876495-120882657	inter
CUST_45926_PI429285431	1.8481294	A	1.7898653	A	1.04121218471907	0	lncRNA	50233-1_{1..3000}	"gi|349501083|ref|NR_045205.1| Homo sapiens checkpoint kinase 1 (CHEK1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|349501083|ref|NR_045205.1| Homo sapiens checkpoint kinase 1 (CHEK1), transcript variant 6, non-coding RNA"	Chr11	125496124	125499123	+	1111	NR_045205.1	NA	NA	NA	"hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30"	NA	inter
CUST_45163_PI429285431	6.761838	P	6.7927146	P	0.978825370020546	0	lncRNA	49639-1_{1..941}	"gi|374253802|ref|NR_046205.1| Homo sapiens uncharacterized LOC100128750 (LOC100128750), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|374253802|ref|NR_046205.1| Homo sapiens uncharacterized LOC100128750 (LOC100128750), non-coding RNA"	Chr8	 30239635	 30240575	-	100128750	NR_046205.1	NA	NA	NA	NA	NA	inter
CUST_8828_PI429285431	4.76564	P	5.1158376	P	0.784476644002017	0	lncRNA	10369-1_{1..582}	lnc-ZNF720-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF720-1:4	chr16	 31716993	 31717574	+	lnc-ZNF720-1	lnc-ZNF720-1:4	ENSG00000131797	KIAA0664L3	ZNF720	NA	chr16:31724550-31727339	inter
CUST_21876_PI429285431	3.9408565	P	3.7928224	P	1.10805853798032	0	lncRNA	23486-1_{1..564}	lnc-METTL20-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-METTL20-1:1	chr12	 31768094	 31768657	+	lnc-METTL20-1	lnc-METTL20-1:1	ENSG00000255867.1	DENND5B-AS1	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10"	NA	inter
CUST_11508_PI429285431	0.9082366	A	1.0076656	A	0.933402346991073	0	lncRNA	13077-1_{1..1480}	lnc-COL15A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL15A1-1:1	chr9	101690638	101692117	+	lnc-COL15A1-1	lnc-COL15A1-1:1	XLOC_007486	linc-COL15A1	NA	NA	NA	inter
LNCA_21_P0005570	13.214095	P	13.341607	P	0.915408758108544	0	lncRNA	THC2676251	NA	NA	NA	NA	XLOC_006188	NA	NA	THC2676251	NA	"BROAD Institute lincRNA (XLOC_006188), lincRNA [TCONS_00014179]"	chr7:099605744-099605803	hs|7q22.1	Agilent_HUMAN_G3V2	THC2676251	THC2676251	chr7	 99605744	 99605803	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1359_PI429285431	0.9174229	A	0.9795955	A	0.957820620387403	0	lncRNA	1347-1_{1..698}	"transcript_id ""ENST00000486137.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000486137.1"" | genecode_v17"	chr3	 59450056	 59450753	-	ENSG00000242545.1	ENST00000486137.1	RP11-719N22.2	RP11-719N22.2-001	NA	NA	NA	inter
CUST_3442_PI429285431	0.9080806	A	0.9037447	A	1.00300993765326	0	lncRNA	3413-1_{1..465}	"transcript_id ""ENST00000427387.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427387.1"" | genecode_v17"	chr9	 84542936	 84543400	-	ENSG00000230846.1	ENST00000427387.1	RP11-383M4.2	RP11-383M4.2-001	FAM75D4	"hg19_refFlat_SPATA31D4:range=chr9:84543429-845478305'pad=0,hg19_refFlat_SPATA31D4:range=chr9:84543429-845478305'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_SPATA31D3:range=chr9:84558501-845629225'pad=0,hg19_refFlat_SPATA31D3:range=chr9:84558501-845629225'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_SPATA31D1:range=chr9:84603734-846101165'pad=0,hg19_refFlat_SPATA31D1:range=chr9:84603734-846101165'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40chr9:84543343-84549913"	NA	inner
CUST_49638_PI429285431	1.1396887	A	0.9083735	A	1.17390462493836	0	lncRNA	53421-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00027077 range=chr7:26438339-26538594 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027077 range=chr7:26438339-26538594 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 26438339	 26441338	+	NA	NA	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80"	NA	inter
CUST_457_PI429285431	5.637225	P	5.8316646	P	0.873912292206054	0	lncRNA	449-1_{1..690}	"transcript_id ""ENST00000604546.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604546.1"" | genecode_v17"	chr1	154909846	154910535	+	ENSG00000270361.1	ENST00000604546.1	RP11-307C12.13	RP11-307C12.13-001	PBXIP1	NA	chr1:154916556-154920535	inter
CUST_9732_PI429285431	3.4457903	P	3.796074	P	0.784429827854682	0	lncRNA	11248-1_{1..374}	lnc-GLB1L2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLB1L2-1:2	chr11	134308395	134308768	+	lnc-GLB1L2-1	lnc-GLB1L2-1:2	XLOC_009343	TCONS_00019545	NA	NA	NA	inter
CUST_47561_PI429285431	6.531335	P	5.770296	P	1.69471068194633	0	lncRNA	51568-1_{1..3000}	"gi|282165725|ref|NR_033181.1| Homo sapiens synapse associated protein 1 (SYAP1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|282165725|ref|NR_033181.1| Homo sapiens synapse associated protein 1 (SYAP1), transcript variant 2, non-coding RNA"	ChrX	 16737707	 16740706	+	94056	NR_033181.1	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50"	NA	inter
CUST_37265_PI429285431	7.743346	P	8.330282	P	0.665755339815064	0	lncRNA	38372-1_{1..666}	n345703|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1252|NULL|-1.3269600|-0.1740730	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345703|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1252|NULL|-1.3269600|-0.1740730	chr8	123790246	123790911	-	NA	NA	NA	NA	ZHX2	NA	chr8:123781468-123802887	inter
CUST_30490_PI429285431	3.457307	P	2.2682161	A	2.28009020268403	0	lncRNA	32270-1_{1..381}	n335644|CR608622|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000287817_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000287817_03|-1.3765200|-0.6470843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335644|CR608622|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000287817_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000287817_03|-1.3765200|-0.6470843	chrX	 77385245	 77385625	-	NA	NA	NA	NA	PGK1	NA	chrX:77375245-77382324	inner
LNCA_33_P3283974	7.3382277	P	7.390762	P	0.9642410131992	0	lncRNA	XR_109033	XR_109033	XR_109033	   399829	Hs.252872	LOC399829	uncharacterized LOC399829	NA	THC2636675	NA	"PREDICTED: Homo sapiens hypothetical LOC399829 (LOC399829), miscRNA [XR_109033]"	chr10:134789119-134789178	hs|10q26.3	Agilent_HUMAN_G3V2	XR_109033	XR_109033	chr10	134789119	134789178	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11432_PI429285431	2.6269755	P	2.5907428	A	1.02543262206295	0	lncRNA	13000-1_{1..593}	lnc-C20orf85-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf85-1:1	chr20	 56579241	 56579833	+	lnc-C20orf85-1	lnc-C20orf85-1:1	XLOC_013584	linc-C20orf85	NA	NA	NA	inter
CUST_47958_PI429285431	0.9129389	A	1.0420295	A	0.914407663686861	0	lncRNA	51849-1_{1..2723}	"gi|410172596|ref|XR_171875.1| PREDICTED: Homo sapiens uncharacterized LOC101060609 (LOC101060609), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410172596|ref|XR_171875.1| PREDICTED: Homo sapiens uncharacterized LOC101060609 (LOC101060609), misc_RNA"	NA	NA	NA	NA	NA	XR_171875.1	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50"	NA	Unknown
CUST_36378_PI429285431	4.499726	P	4.4630013	P	1.0257823833584	0	lncRNA	37597-1_{1..1405}	n344896|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_445|NULL|-1.3346500|-0.3438833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344896|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_445|NULL|-1.3346500|-0.3438833	chr6	 36125020	 36126424	+	NA	NA	NA	NA	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20"	NA	inter
CUST_5696_PI429285431	2.2196152	A	2.4252803	A	0.867138833417981	0	lncRNA	5620-1_{1..1755}	"transcript_id ""ENST00000570809.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000570809.1"" | genecode_v17"	chr17	   666805	   668559	-	ENSG00000262228.1	ENST00000570809.1	RP11-676J12.4	RP11-676J12.4-001	GLOD4	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40chr17:662549-678559"	NA	inner
CUST_51163_PI429285431	0.90487206	A	0.99890506	A	0.936900016110371	0	lncRNA	54786-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00007712 range=chr14:48670212-48678944 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007712 range=chr14:48670212-48678944 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 48670212	 48673211	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30"	NA	inter
CUST_42659_PI429285431	0.9257726	A	0.95498973	A	0.979951918492831	0	lncRNA	45555-1_{1..138}	ENST00000516487 ncrna:snoRNA chromosome:GRCh37:X:99355082:99355219:1 gene:ENSG00000252296 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516487 ncrna:snoRNA chromosome:GRCh37:X:99355082:99355219:1 gene:ENSG00000252296 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	 99355082	 99355219	+	ENSG00000252296	ENST00000516487	NA	NA	NA	NA	NA	inter
CUST_24448_PI429285431	8.724649	P	8.680338	P	1.03119058732665	0	lncRNA	26001-1_{1..1129}	lnc-TEX261-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TEX261-1:2	chr2	 71175357	 71176485	-	lnc-TEX261-1	lnc-TEX261-1:2	ENSG00000239322.1	AC007040.7	ATP6V1B1	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20chr2:71165357-71185740"	NA	inner
CUST_26110_PI429285431	0.8987044	A	0.90284866	A	0.99713153978176	0	lncRNA	27621-1_{1..395}	lnc-APC-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-APC-4:3	chr5	111545656	111546050	+	lnc-APC-4	lnc-APC-4:3	ENSG00000251187.1	CTC-459M5.2	EPB41L4A	"hg19_refFlat_EPB41L4A:range=chr5:111500687-1117547365'pad=0,hg19_refFlat_EPB41L4A:range=chr5:111500687-1117547365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr5:111535656-111555836"	NA	inner
LNCA_21_P0007591	0.9232094	A	0.9248073	A	0.99889303326039	0	lncRNA	ENST00000443873	NA	AJ488202	NA	Hs.639428	XLOC_009813	NA	ENST00000443873	THC2627572	NA	"BROAD Institute lincRNA (XLOC_009813), lincRNA [TCONS_00020485]"	chr12:77965968-77966027	hs|12q21.2	Agilent_HUMAN_G3V2	ENST00000443873	ENST00000443873	chr12	 77965968	 77966027	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4704_PI429285431	0.9169073	A	0.9218276	A	0.996595317049714	0	lncRNA	4651-1_{1..1607}	"transcript_id ""ENST00000426859.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000426859.1"" | genecode_v17"	chr13	114598076	114599682	+	ENSG00000229373.3	ENST00000426859.1	LINC00452	LINC00452-001	NA	NA	NA	inter
CUST_14791_PI429285431	1.4408602	A	0.9177631	A	1.43703689246995	0	lncRNA	16452-1_{1..242}	lnc-CADM1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CADM1-4:4	chr11	115943732	115943973	-	lnc-CADM1-4	lnc-CADM1-4:4	XLOC_009564	linc-CADM1-1	NA	NA	NA	inter
CUST_29972_PI429285431	0.9119077	A	0.9044819	A	1.00516044178186	0	lncRNA	31738-1_{1..359}	n334217|S60973|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000215953|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000215953|1.2449300|-0.1569370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334217|S60973|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000215953|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000215953|1.2449300|-0.1569370	chrX	 31747803	 31748161	-	NA	NA	NA	NA	DMD	NA	chrX:31737803-31864900	inner
CUST_11025_PI429285431	2.5590298	A	3.310338	P	0.594064630156193	0	lncRNA	12571-1_{1..289}	lnc-PPP1R14C-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP1R14C-1:2	chr6	150615916	150616204	+	lnc-PPP1R14C-1	lnc-PPP1R14C-1:2	XLOC_005502	linc-IYD	NA	NA	NA	inter
LNCA_21_P0010444	9.752653	P	10.010958	P	0.836069627840926	0	lncRNA	TCONS_00029706	NA	NA	NA	NA	XLOC_014389	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014389), lincRNA [TCONS_00029706]"	chr22:42833507-42833448	hs|22q13.2	Agilent_HUMAN_G3V2	TCONS_00029706	TCONS_00029706	chr22	 42833448	 42833507	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41122_PI429285431	7.8687468	P	5.5277886	P	5.06639022144504	0	lncRNA	41889-1_{1..88}	ENST00000581256 ncrna:miRNA chromosome:GRCh37:12:53345492:53345579:1 gene:ENSG00000265039 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581256 ncrna:miRNA chromosome:GRCh37:12:53345492:53345579:1 gene:ENSG00000265039 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 53345492	 53345579	+	ENSG00000265039	ENST00000581256	NA	NA	KRT18	NA	chr12:53342655-53346685	inner
CUST_33376_PI429285431	4.0211444	P	4.627195	P	0.656992770300656	0	lncRNA	34955-1_{1..1246}	n340093|BC030809|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2548|NULL|-0.6719220|-0.1899856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340093|BC030809|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2548|NULL|-0.6719220|-0.1899856	chr4	 71569680	 71570925	-	NA	NA	NA	NA	RUFY3	"hg19_refFlat_RUFY3:range=chr4:71570654-716553135'pad=0,hg19_refFlat_RUFY3:range=chr4:71570654-716553135'pad=0 3'pad=0 strand=+ repeatMasking=none,-113.00chr4:71570654-71580980"	NA	inner
CUST_23305_PI429285431	0.90419185	A	0.9127025	A	0.994118232668805	0	lncRNA	24876-1_{1..355}	lnc-ZBTB32-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZBTB32-2:4	chr19	 36205049	 36205403	+	lnc-ZBTB32-2	lnc-ZBTB32-2:4	ENSG00000239352.1	AD000671.1	MLL4	NA	chr19:36208921-36215241	inner
CUST_587_PI429285431	3.6302752	P	3.0781014	A	1.46629338941862	0	lncRNA	579-1_{1..767}	"transcript_id ""ENST00000435378.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000435378.1"" | genecode_v17"	chr1	222988402	222989168	+	ENSG00000228106.1	ENST00000435378.1	RP11-452F19.3	RP11-452F19.3-006	DISP1	NA	chr1:222988431-223020724	inner
CUST_3094_PI429285431	7.438312	P	7.3891544	P	1.03466060166527	0	lncRNA	3073-1_{1..460}	"transcript_id ""ENST00000519032.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519032.1"" | genecode_v17"	chr8	 47842462	 47842921	-	ENSG00000253782.1	ENST00000519032.1	RP11-350F16.2	RP11-350F16.2-001	NA	NA	NA	inter
CUST_41308_PI429285431	2.6576753	A	2.4800224	A	1.13104231107086	0	lncRNA	42321-1_{1..100}	ENST00000579869 ncrna:miRNA chromosome:GRCh37:2:240008039:240008138:-1 gene:ENSG00000265416 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579869 ncrna:miRNA chromosome:GRCh37:2:240008039:240008138:-1 gene:ENSG00000265416 gene_biotype:miRNA transcript_biotype:miRNA	chr2	240008039	240008138	-	ENSG00000265416	ENST00000579869	NA	NA	HDAC4	NA	chr2:239998039-240018138	inner
CUST_44311_PI429285431	0.91323894	A	1.4208052	A	0.703408044744511	0	lncRNA	48943-1_{1..615}	"gi|410170472|ref|XR_171036.1| PREDICTED: Homo sapiens uncharacterized LOC101060141, transcript variant 2 (LOC101060141), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170472|ref|XR_171036.1| PREDICTED: Homo sapiens uncharacterized LOC101060141, transcript variant 2 (LOC101060141), misc_RNA"	NA	NA	NA	NA	NA	XR_171036.1	NA	NA	NA	NA	NA	Unknown
CUST_12760_PI429285431	0.8992405	A	0.8952126	A	1.00279582858789	0	lncRNA	14383-1_{1..520}	lnc-CTC-236F12.4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTC-236F12.4.1-1:1	chr5	 55777355	 55777874	-	lnc-CTC-236F12.4.1-1	lnc-CTC-236F12.4.1-1:1	XLOC_004829	linc-ANKRD55-6	NA	NA	NA	inter
CUST_26758_PI429285431	0.9243387	A	0.92779976	A	0.997603851377471	0	lncRNA	28256-1_{1..867}	n323808|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058396|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058396|-0.5924360|-0.1944238	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323808|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058396|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058396|-0.5924360|-0.1944238	chrX	134058542	134059408	-	NA	NA	NA	NA	MOSPD1	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70chrX:134048542-134049297"	NA	inter
LNCA_21_P0014866	0.9220952	A	1.418217	A	0.709010156898822	0	lncRNA	ENST00000521292	XR_132759	XR_132759	NA	Hs.497090	NKX2-1-AS1	NA	ENST00000521292	THC2652581	NA	"PREDICTED: Homo sapiens NKX2-1 antisense RNA 1 (non-protein coding) (NKX2-1-AS1), miscRNA [XR_132759]"	chr14:36992006-36992065	hs|14q13.3	Agilent_HUMAN_G3V2	ENST00000521292	ENST00000521292	chr14	 36992006	 36992065	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009494	0.92073727	A	0.9121501	A	1.00596992205258	0	lncRNA	TCONS_00026355	NA	NA	NA	NA	XLOC_012708	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012708), lincRNA [TCONS_00026355]"	chr18:67873629-67873688	hs|18q22.2	Agilent_HUMAN_G3V2	TCONS_00026355	TCONS_00026355	chr18	 67873629	 67873688	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51256_PI429285431	1.4375052	A	1.0005635	A	1.35373157300361	0	lncRNA	54864-2_{3001..4379}	hg19_lincRNAsTranscripts_TCONS_l2_00008482 range=chr15:28916540-28930814 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008482 range=chr15:28916540-28930814 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28919540	 28920918	+	NA	NA	NA	NA	NA	"hg19_refFlat_HERC2:range=chr15:28356909-285665795'pad=0,hg19_refFlat_HERC2:range=chr15:28356909-285665795'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_FRMD6:range=chr14:52156555-521947475'pad=0,hg19_refFlat_FRMD6:range=chr14:52156555-521947475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
LNCA_21_P0004755	2.7357805	A	1.4902081	A	2.37112611722347	0	lncRNA	ENST00000420819	NA	NA	NA	NA	XLOC_005747	NA	ENST00000420819	NA	NA	"BROAD Institute lincRNA (XLOC_005747), lincRNA [TCONS_00011507]"	chr6:53434175-53434116	hs|6p12.1	Agilent_HUMAN_G3V2	ENST00000420819	ENST00000420819	chr6	 53434116	 53434175	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22337_PI429285431	1.6208832	A	0.9160119	A	1.62999924927752	0	lncRNA	23932-1_{1..3000}	lnc-SAP30-5:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:11	chr4	174460297	174463296	+	lnc-SAP30-5	lnc-SAP30-5:11	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174450297-174451378	inter
CUST_6740_PI429285431	0.90607595	A	0.9032832	A	1.00193766163333	0	lncRNA	6688-1_{1..1014}	"transcript_id ""ENST00000441277.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441277.2"" | genecode_v17"	chr20	 56644110	 56645123	-	ENSG00000225708.2	ENST00000441277.2	RP13-379L11.1	RP13-379L11.1-001	NA	NA	NA	inter
CUST_40295_PI429285431	0.9115955	A	1.454569	A	0.68635482275179	0	lncRNA	41099-1_{1..754}	n408246|NR_028413|lncRNA|Homosapiens||RefGeneNoncode|NR_028413||0.4745320|-0.2091682	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408246|NR_028413|lncRNA|Homosapiens||RefGeneNoncode|NR_028413||0.4745320|-0.2091682	chr19	 45430059	 45430812	+	NA	NA	NA	NA	APOC1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30chr19:45420059-45422606"	NA	inter
CUST_1202_PI429285431	3.0904183	A	2.7333176	A	1.28084926138704	0	lncRNA	1193-1_{1..2528}	"transcript_id ""ENST00000456248.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456248.1"" | genecode_v17"	chr2	199164087	199166614	-	ENSG00000236653.1	ENST00000456248.1	AC005235.1	AC005235.1-001	NA	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70"	NA	inter
LNCA_21_P0013900	3.6390395	P	2.6816027	A	1.94185678009212	0	lncRNA	TCONS_l2_00030956	NA	NA	NA	NA	XLOC_l2_015967	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015967), lincRNA [TCONS_l2_00030956]"	chrY:28768910-28768851	hs|Yq11.23	Agilent_HUMAN_G3V2	TCONS_l2_00030956	TCONS_l2_00030956	chrY	 28768851	 28768910	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11477_PI429285431	0.90971625	A	0.91166437	A	0.99865057740518	0	lncRNA	13043-1_{1..306}	lnc-RP11-105C20.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-105C20.2.1-1:1	chr16	 59497608	 59497913	-	lnc-RP11-105C20.2.1-1	lnc-RP11-105C20.2.1-1:1	XLOC_011972	linc-GOT2-4	NA	NA	NA	inter
CUST_32876_PI429285431	1.045653	A	1.5365987	A	0.711558511675649	0	lncRNA	34505-1_{1..3000}	n339542|BC040996|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1984|NULL|0.7115030|-0.2016636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339542|BC040996|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1984|NULL|0.7115030|-0.2016636	chr21	 47179717	 47182716	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90"	NA	inter
CUST_26910_PI429285431	12.828466	P	12.745556	P	1.05915225926669	0	lncRNA	28428-1_{1..389}	n323986|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053794|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053794|-0.9851260|-0.1813178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323986|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053794|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053794|-0.9851260|-0.1813178	chr9	117541762	117542150	+	NA	NA	NA	NA	TNFSF15	NA	chr9:117546915-117556332	inter
CUST_50280_PI429285431	3.104497	P	3.1104786	P	0.995862454151707	0	lncRNA	54003-1_{1..321}	hg19_lincRNAsTranscripts_TCONS_l2_00028834 range=chr9:74920361-74956542 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028834 range=chr9:74920361-74956542 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 74920361	 74920681	+	NA	NA	NA	NA	ZFAND5	NA	chr9:74966341-74966542	inter
CUST_31443_PI429285431	2.5238464	A	2.5204668	A	1.00234530614935	0	lncRNA	33212-1_{1..3000}	n337912|AK025352|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|295|NULL|-0.7567950|-0.1954253	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337912|AK025352|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|295|NULL|-0.7567950|-0.1954253	chr1	 46494558	 46497557	-	NA	NA	NA	NA	MAST2	"hg19_refFlat_MAST2:range=chr1:46269568-465017385'pad=0,hg19_refFlat_MAST2:range=chr1:46269568-465017385'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90chr1:46484558-46501796"	NA	inner
CUST_40009_PI429285431	0.91404194	A	0.91294754	A	1.00075886806919	0	lncRNA	40871-1_{1..3000}	n407158|NR_026572|lncRNA|Homosapiens||RefGeneNoncode|NR_026572||10.7316000|-0.0758398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407158|NR_026572|lncRNA|Homosapiens||RefGeneNoncode|NR_026572||10.7316000|-0.0758398	chr11	 72287184	 72290183	-	NA	NA	NA	NA	PDE2A	NA	chr11:72287185-72363487	inner
CUST_20459_PI429285431	0.89321893	A	0.88944876	A	1.00261670030538	0	lncRNA	22103-1_{1..542}	lnc-STRN3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STRN3-1:3	chr14	 31358590	 31359131	-	lnc-STRN3-1	lnc-STRN3-1:3	ENSG00000258525.1	RP11-829H16.3	STRN3	"hg19_refFlat_COCH:range=chr14:31344145-313589975'pad=0,hg19_refFlat_COCH:range=chr14:31344145-313589975'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30chr14:31363005-31368897"	NA	inter
CUST_20906_PI429285431	1.8232502	A	1.0099566	A	1.75721850813675	0	lncRNA	22537-1_{1..360}	lnc-AP3M1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP3M1-2:1	chr10	 75861912	 75862271	-	lnc-AP3M1-2	lnc-AP3M1-2:1	ENSG00000228726.1	RP11-178G16.2	VCL	NA	chr10:75851912-75872185	inner
CUST_23124_PI429285431	2.6807303	A	2.9956236	P	0.803910444799703	0	lncRNA	24695-1_{1..427}	lnc-ATF7IP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATF7IP-1:1	chr12	 14685997	 14686423	+	lnc-ATF7IP-1	lnc-ATF7IP-1:1	ENSG00000255649.1	RP11-502N13.2	PLBD1	NA	chr12:14675997-14696163	inner
LNCA_21_P0011798	0.90977556	A	0.8983591	A	1.00794467986916	0	lncRNA	THC2688675	NA	NA	NA	NA	XLOC_l2_007274	NA	NA	THC2688675	NA	"BROAD Institute lincRNA (XLOC_l2_007274), lincRNA [TCONS_l2_00013566]"	chr2:034949686-034949745	hs|2p22.3	Agilent_HUMAN_G3V2	THC2688675	THC2688675	chr2	 34949686	 34949745	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47359_PI429285431	4.8680844	P	3.6769056	P	2.28339238830493	0	lncRNA	51409-2_{3001..4353}	"gi|393715114|ref|NR_072999.1| Homo sapiens junctional adhesion molecule 2 (JAM2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393715114|ref|NR_072999.1| Homo sapiens junctional adhesion molecule 2 (JAM2), transcript variant 4, non-coding RNA"	Chr21	 27014594	 27015946	+	58494	NR_072999.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60"	NA	inter
CUST_39542_PI429285431	0.9055289	A	0.92727304	A	0.985041123106625	0	lncRNA	40487-1_{1..1451}	n387453|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011eka.1||-1.0884700|-0.3247196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387453|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011eka.1||-1.0884700|-0.3247196	chr6	  1214064	  1215514	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48149_PI429285431	1.4935681	A	1.5404841	A	0.968003386633697	0	lncRNA	52016-1_{1..3000}	"gi|410169909|ref|XR_172429.1| PREDICTED: Homo sapiens uncharacterized LOC283575 (LOC283575), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|410169909|ref|XR_172429.1| PREDICTED: Homo sapiens uncharacterized LOC283575 (LOC283575), misc_RNA"	NA	NA	NA	NA	NA	XR_172429.1	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60"	NA	Unknown
CUST_45686_PI429285431	6.14069	P	5.9994535	P	1.10284993767871	0	lncRNA	50059-1_{1..3000}	"gi|394025694|ref|NR_073009.1| Homo sapiens fibroblast growth factor receptor 2 (FGFR2), transcript variant 14, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|394025694|ref|NR_073009.1| Homo sapiens fibroblast growth factor receptor 2 (FGFR2), transcript variant 14, non-coding RNA"	Chr10	123237844	123240843	-	2263	NR_073009.1	NA	NA	NA	NA	NA	inter
CUST_50681_PI429285431	0.91145235	A	0.9046413	A	1.00473222186661	0	lncRNA	54353-3_{6001..7989}	hg19_lincRNAsTranscripts_TCONS_l2_00004169 range=chr10:46744225-46762776 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004169 range=chr10:46744225-46762776 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 46750225	 46752213	-	NA	NA	NA	NA	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_24235_PI429285431	4.6002145	P	3.2455957	A	2.55729536499068	0	lncRNA	25786-1_{1..132}	lnc-GPR89C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR89C-2:1	chr1	145833025	145833156	+	lnc-GPR89C-2	lnc-GPR89C-2:1	ENSG00000235702.1	WI2-925H4.1	GPR89A	NA	chr1:145823025-145827103	inter
LNCA_21_P0014524	0.9103441	A	0.8989008	A	1.0079634319173	0	lncRNA	XR_110206	XR_110206	XR_110206	NA	NA	LOC100506165	uncharacterized LOC100506165	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506165 (LOC100506165), miscRNA [XR_110206]"	chr6:106898506-106898447	hs|6q21	Agilent_HUMAN_G3V2	XR_110206	XR_110206	chr6	106898447	106898506	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20969_PI429285431	2.7017977	A	3.5855393	P	0.541960044776938	0	lncRNA	22599-1_{1..514}	lnc-SAP30-5:25	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:25	chr4	174452333	174452846	+	lnc-SAP30-5	lnc-SAP30-5:25	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174447652-174451378	inter
CUST_23044_PI429285431	0.89747405	A	0.9053131	A	0.994581119981531	0	lncRNA	24615-1_{1..504}	lnc-RP11-1026M7.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RP11-1026M7.2.1-1:1	chr5	177283427	177283930	+	lnc-RP11-1026M7.2.1-1	lnc-RP11-1026M7.2.1-1:1	ENSG00000249704.1	RP11-1026M7.4	NA	NA	NA	inter
CUST_47997_PI429285431	7.50445	P	7.8392954	P	0.792869096349742	0	lncRNA	51883-1_{1..730}	"gi|410173161|ref|XR_172135.1| PREDICTED: Homo sapiens uncharacterized LOC101060634 (LOC101060634), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173161|ref|XR_172135.1| PREDICTED: Homo sapiens uncharacterized LOC101060634 (LOC101060634), misc_RNA"	NA	NA	NA	NA	NA	XR_172135.1	NA	NA	NA	NA	NA	Unknown
CUST_4911_PI429285431	4.288852	P	4.7629786	P	0.719902483290987	0	lncRNA	4853-1_{1..1187}	"transcript_id ""ENST00000554211.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554211.1"" | genecode_v17"	chr14	 82071691	 82072877	-	ENSG00000258977.1	ENST00000554211.1	RP11-799P8.1	RP11-799P8.1-001	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70"	NA	inter
CUST_30692_PI429285431	2.8453288	A	2.3865063	A	1.37441958534588	0	lncRNA	32474-1_{1..217}	n336184|X92789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324591|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324591|0.0423247|-0.1824527	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336184|X92789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324591|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324591|0.0423247|-0.1824527	chr7	142021220	142021436	+	NA	NA	NA	NA	PRSS1	NA	chr7:142457319-142460927	inner
CUST_43686_PI429285431	0.90968007	A	0.99989176	A	0.939384900968721	0	lncRNA	48438-1_{1..2232}	"gi|299890821|ref|NR_033922.1| Homo sapiens uncharacterized LOC440704 (LOC440704), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299890821|ref|NR_033922.1| Homo sapiens uncharacterized LOC440704 (LOC440704), non-coding RNA"	Chr1	190594020	190596251	+	440704	NR_033922.1	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-59.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80"	NA	inter
CUST_48793_PI429285431	0.8990658	A	1.0554638	A	0.897262486405592	0	lncRNA	52631-1_{1..2765}	hg19_lincRNAsTranscripts_TCONS_l2_00014267 range=chr2:223181503-223186363 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014267 range=chr2:223181503-223186363 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	223181503	223184267	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23833_PI429285431	0.91880834	A	2.2856348	A	0.387743241522797	0	lncRNA	25396-1_{1..689}	lnc-CDK5-2:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK5-2:13	chr7	150710818	150711506	-	lnc-CDK5-2	lnc-CDK5-2:13	ENSG00000181652.11	ATG9B	NOS3	"hg19_refFlat_NOS3:range=chr7:150690892-1507112575'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507112575'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.40chr7:150700818-150711687"	NA	inter
CUST_11227_PI429285431	1.6758242	A	1.8345397	A	0.895822309167023	0	lncRNA	12785-1_{1..564}	lnc-PHTF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHTF2-1:1	chr7	 77624189	 77624752	+	lnc-PHTF2-1	lnc-PHTF2-1:1	XLOC_006154	linc-GNAI1-2	NA	NA	NA	inter
CUST_50537_PI429285431	0.8965845	A	0.89922327	A	0.998172615717885	0	lncRNA	54231-1_{1..567}	hg19_lincRNAsTranscripts_TCONS_l2_00030397 range=chrX:149184137-149184896 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030397 range=chrX:149184137-149184896 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	149184137	149184703	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21383_PI429285431	10.7572975	P	10.851083	P	0.937060758775142	0	lncRNA	23005-1_{1..542}	lnc-NOMO3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-NOMO3-2:1	chr16	 16317655	 16318196	+	lnc-NOMO3-2	lnc-NOMO3-2:1	ENSG00000262332.1	RP11-517A5.7	NOMO3	NA	chr16:16326389-16328118	inter
CUST_51211_PI429285431	6.1384506	P	5.774383	P	1.28704955284677	0	lncRNA	54829-1_{1..695}	hg19_lincRNAsTranscripts_TCONS_l2_00009247 range=chr15:85057163-85089445 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009247 range=chr15:85057163-85089445 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 85057163	 85057857	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9011_PI429285431	5.3793526	P	5.554683	P	0.885564687546858	0	lncRNA	10538-3_{6001..9000}	lnc-CCDC111-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC111-1:1	chr4	185441148	185444147	+	lnc-CCDC111-1	lnc-CCDC111-1:1	ENSG00000249161	XLOC_003808	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.52;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.41;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40"	NA	inter
CUST_44772_PI429285431	3.4419346	P	3.6006722	P	0.895808586570885	0	lncRNA	49312-1_{1..2665}	"gi|310119785|ref|XR_108662.1| PREDICTED: Homo sapiens uncharacterized LOC401264 (FLJ37798), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|310119785|ref|XR_108662.1| PREDICTED: Homo sapiens uncharacterized LOC401264 (FLJ37798), misc_RNA"	NA	NA	NA	NA	NA	XR_108662.1	NA	NA	NA	NA	NA	Unknown
CUST_6129_PI429285431	6.764811	P	6.832988	P	0.953842519242827	0	lncRNA	6055-1_{1..640}	"transcript_id ""ENST00000584560.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584560.1"" | genecode_v17"	chr18	 24402777	 24403416	-	ENSG00000263382.1	ENST00000584560.1	RP11-552O4.1	RP11-552O4.1-001	NA	NA	NA	inter
CUST_35199_PI429285431	10.35166	P	10.3725605	P	0.985617310792407	0	lncRNA	36600-1_{1..1237}	n342183|CR602569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4672|NULL|3.4987700|-0.1409023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342183|CR602569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4672|NULL|3.4987700|-0.1409023	chr6	170124929	170126165	+	NA	NA	NA	NA	PHF10	NA	chr6:170114929-170124106	inter
CUST_5181_PI429285431	4.6932583	P	4.7757807	P	0.944405009939825	0	lncRNA	5122-1_{1..612}	"transcript_id ""ENST00000558372.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558372.1"" | genecode_v17"	chr15	 50651647	 50652258	-	ENSG00000259715.1	ENST00000558372.1	CTD-3110H11.1	CTD-3110H11.1-001	GABPB1	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-20.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10chr15:50641647-50647605"	NA	inter
CUST_32880_PI429285431	0.90155315	A	1.0766397	A	0.885714381830056	0	lncRNA	34508-1_{1..3000}	n339547|AK124746|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1989|NULL|-1.1499600|-0.2284620	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339547|AK124746|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1989|NULL|-1.1499600|-0.2284620	chr3	129222569	129225568	-	NA	NA	NA	NA	IFT122	"hg19_refFlat_IFT122:range=chr3:129159174-1292391085'pad=0,hg19_refFlat_IFT122:range=chr3:129159174-1292391085'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50chr3:129212569-129236395"	NA	inner
CUST_32409_PI429285431	3.598725	P	2.3521538	A	2.37276825273138	0	lncRNA	34085-1_{1..1922}	n339003|AK124958|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1432|NULL|-1.3059600|-0.4482724	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339003|AK124958|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1432|NULL|-1.3059600|-0.4482724	chr2	170495991	170497912	+	NA	NA	NA	NA	C2orf77	NA	chr2:170501935-170507913	inter
CUST_42429_PI429285431	1.5380073	A	1.760036	A	0.857358980744464	0	lncRNA	45149-1_{1..80}	ENST00000384550 ncrna:snoRNA chromosome:GRCh37:2:232321155:232321234:-1 gene:ENSG00000207280 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384550 ncrna:snoRNA chromosome:GRCh37:2:232321155:232321234:-1 gene:ENSG00000207280 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	232321155	232321234	-	ENSG00000207280	ENST00000384550	NA	NA	NCL	NA	chr2:232319459-232329205	inner
CUST_26412_PI429285431	3.397809	P	4.0693073	P	0.627854295231578	0	lncRNA	27919-1_{1..1766}	lnc-FBRSL1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBRSL1-4:2	chr12	132853843	132855608	+	lnc-FBRSL1-4	lnc-FBRSL1-4:2	ENSG00000256943.1	RP13-895J2.2	GALNT9	NA	chr12:132843843-132864915	inner
LNCA_21_P0001502	4.292022	P	4.704676	P	0.751240110975147	0	lncRNA	TCONS_00001491	NA	NA	NA	NA	XLOC_000831	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000831), lincRNA [TCONS_00001491]"	chr1:50731626-50731567	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_00001491	TCONS_00001491	chr1	 50731567	 50731626	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5220_PI429285431	1.8034903	A	1.0837376	A	1.6468997065346	0	lncRNA	5161-1_{1..391}	"transcript_id ""ENST00000558702.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558702.1"" | genecode_v17"	chr15	 69750861	 69751251	-	ENSG00000259215.1	ENST00000558702.1	RP11-253M7.4	RP11-253M7.4-001	RPLP1	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60chr15:69745159-69747884"	NA	inter
CUST_6172_PI429285431	0.93003875	A	1.0696014	A	0.907794309565039	0	lncRNA	6096-1_{1..575}	"transcript_id ""ENST00000591487.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591487.1"" | genecode_v17"	chr18	 41906411	 41906985	-	ENSG00000267337.1	ENST00000591487.1	CTC-782O7.1	CTC-782O7.1-002	NA	NA	NA	inter
CUST_13604_PI429285431	0.9152844	A	0.91215634	A	1.00217055822794	0	lncRNA	15243-1_{1..719}	lnc-FOXG1-5:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXG1-5:6	chr14	 27289364	 27290082	+	lnc-FOXG1-5	lnc-FOXG1-5:6	XLOC_010778	linc-FOXG1-3	NA	NA	NA	inter
LNCA_21_P0009316	4.8167434	P	4.9222264	P	0.929493705236908	0	lncRNA	TCONS_00025615	NA	NA	NA	NA	XLOC_012449	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012449), lincRNA [TCONS_00025615]"	chr17:34365156-34365097	hs|17q12	Agilent_HUMAN_G3V2	TCONS_00025615	TCONS_00025615	chr17	 34365097	 34365156	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2212_PI429285431	4.1942306	P	3.6765969	P	1.43160521075873	0	lncRNA	2204-1_{1..601}	"transcript_id ""ENST00000512859.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512859.1"" | genecode_v17"	chr5	 81147420	 81148020	+	ENSG00000249483.1	ENST00000512859.1	CTD-2249K22.1	CTD-2249K22.1-001	NA	NA	NA	inter
CUST_41058_PI429285431	2.772153	A	3.0917745	A	0.801280070816466	0	lncRNA	41719-1_{1..3000}	n411749|NR_045044|lncRNA|Homosapiens||RefGeneNoncode|NR_045044||5.0931600|-0.2375134	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411749|NR_045044|lncRNA|Homosapiens||RefGeneNoncode|NR_045044||5.0931600|-0.2375134	chrX	 64135681	 64138680	-	NA	NA	NA	NA	ZC4H2	NA	chrX:64136250-64206413	inner
CUST_35954_PI429285431	0.89784616	A	0.8949276	A	1.00202503926342	0	lncRNA	37310-1_{1..3000}	n344585|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_133|NULL|-1.7306400|-0.3500855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344585|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_133|NULL|-1.7306400|-0.3500855	chr12	 92367961	 92370960	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70"	NA	inner
CUST_26965_PI429285431	2.929518	A	3.2472644	P	0.802322187856701	0	lncRNA	28487-1_{1..928}	n324048|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000144685|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000144685|-0.9448030|-0.4546755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324048|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000144685|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000144685|-0.9448030|-0.4546755	chr9	 91642993	 91643920	-	NA	NA	NA	NA	SHC3	NA	chr9:91632993-91654328	inner
CUST_9697_PI429285431	9.254991	P	9.084635	P	1.12533613882194	0	lncRNA	11213-1_{1..487}	lnc-HSPG2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HSPG2-1:1	chr1	 22352457	 22352943	-	lnc-HSPG2-1	lnc-HSPG2-1:1	XLOC_000732	linc-HSPG2	NA	NA	NA	inter
CUST_30245_PI429285431	4.1618757	P	4.6292067	P	0.72330147559762	0	lncRNA	32020-1_{1..209}	n335116|AY114100|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250711|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250711|1.5044200|-0.2459072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335116|AY114100|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250711|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250711|1.5044200|-0.2459072	chr11	 92703080	 92703288	+	NA	NA	NA	NA	MTNR1B	NA	chr11:92702789-92713268	inner
CUST_4269_PI429285431	1.5731893	A	1.5807841	A	0.994749518012091	0	lncRNA	4225-2_{3001..3942}	"transcript_id ""ENST00000515617.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000515617.1"" | genecode_v17"	chr12	 54455038	 54455979	+	ENSG00000248265.1	ENST00000515617.1	RP11-834C11.3	RP11-834C11.3-001	HOXC4	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50chr12:54442038-54449814"	NA	inter
LNCA_21_P0006856	0.93634915	A	0.91601855	A	1.01419185974938	0	lncRNA	TCONS_00018161	NA	NA	NA	NA	XLOC_008451	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008451), lincRNA [TCONS_00018161]"	chr10:37068484-37068543	hs|10p11.21	Agilent_HUMAN_G3V2	TCONS_00018161	TCONS_00018161	chr10	 37068484	 37068543	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25023_PI429285431	1.76763	A	1.6008518	A	1.12254882809969	0	lncRNA	26563-1_{1..515}	lnc-TMEM5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TMEM5-1:1	chr12	 64272987	 64273501	+	lnc-TMEM5-1	lnc-TMEM5-1:1	ENSG00000256571.1	RP11-274J7.2	SRGAP1	NA	chr12:64262987-64283254	inner
CUST_47413_PI429285431	6.43265	P	6.4454	P	0.991201310481318	0	lncRNA	51456-1_{1..3000}	"gi|237681086|ref|NR_027673.1| Homo sapiens adenosine deaminase, RNA-specific, B1 (ADARB1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237681086|ref|NR_027673.1| Homo sapiens adenosine deaminase, RNA-specific, B1 (ADARB1), transcript variant 4, non-coding RNA"	Chr21	 46494493	 46497492	+	104	NR_027673.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0011979	5.0638747	P	4.8362226	P	1.17092778273174	0	lncRNA	TCONS_l2_00014990	NA	NA	NA	NA	XLOC_l2_008352	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008352), lincRNA [TCONS_l2_00014990]"	chr2:174745593-174745534	hs|2q31.1	Agilent_HUMAN_G3V2	TCONS_l2_00014990	TCONS_l2_00014990	chr2	174745534	174745593	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26593_PI429285431	1.600776	A	0.92500484	A	1.59745042553283	0	lncRNA	28096-1_{1..424}	lnc-FBLN7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBLN7-1:1	chr2	113091554	113091977	+	lnc-FBLN7-1	lnc-FBLN7-1:1	ENSG00000248341.1	AC115115.2	ZC3H6	NA	chr2:113081554-113097640	inner
CUST_33032_PI429285431	0.9099539	A	0.9161938	A	0.99568417098121	0	lncRNA	34646-1_{1..2328}	n339719|AK096285|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2164|NULL|-0.3105690|-0.2408034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339719|AK096285|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2164|NULL|-0.3105690|-0.2408034	chr20	 50448335	 50450662	-	NA	NA	NA	NA	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70"	NA	inter
CUST_14514_PI429285431	0.90800065	A	0.91436875	A	0.995595696954591	0	lncRNA	16180-1_{1..1236}	lnc-CITED2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CITED2-1:1	chr6	139795703	139796938	-	lnc-CITED2-1	lnc-CITED2-1:1	XLOC_005856	linc-CITED2-2	NA	NA	NA	inter
CUST_43411_PI429285431	2.2515888	A	1.8635415	A	1.30862097501792	0	lncRNA	48223-1_{1..2133}	"gi|300796041|ref|NR_034112.1| Homo sapiens ornithine decarboxylase 1 pseudogene (LOC149086), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300796041|ref|NR_034112.1| Homo sapiens ornithine decarboxylase 1 pseudogene (LOC149086), non-coding RNA"	NW_003571030.1	   100174	   102306	+	149086	NR_034112.2	NA	NA	NA	NA	NA	Unknown
CUST_18704_PI429285431	0.9214748	A	0.95747495	A	0.975355360117914	0	lncRNA	20402-1_{1..469}	lnc-RNF144A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RNF144A-2:1	chr2	  7586011	  7586479	+	lnc-RNF144A-2	lnc-RNF144A-2:1	ENSG00000229727	AC013460.1	NA	NA	NA	inter
CUST_47681_PI429285431	2.759758	A	1.9345187	A	1.77182890730602	0	lncRNA	51661-1_{1..3000}	"gi|385137089|ref|NR_047627.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 57, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137089|ref|NR_047627.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 57, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047627.1	NA	NA	NA	NA	NA	inter
CUST_39273_PI429285431	0.9044546	A	0.91534984	A	0.99247643985141	0	lncRNA	40245-1_{1..3000}	n386215|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ejr.1||2.8065500|-0.2670084	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386215|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ejr.1||2.8065500|-0.2670084	chr19	 45041044	 45044043	-	NA	NA	NA	NA	CEACAM20	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30chr19:45031044-45033548"	NA	inter
CUST_34610_PI429285431	4.7960043	P	4.999796	P	0.868265580956757	0	lncRNA	36065-1_{1..2517}	n341494|AK096200|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3964|NULL|-0.6784790|-0.1891712	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341494|AK096200|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3964|NULL|-0.6784790|-0.1891712	chr8	 49340702	 49343218	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33653_PI429285431	0.9053364	A	0.90353405	A	1.00125007451348	0	lncRNA	35217-1_{1..2343}	n340417|BC052942|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2878|NULL|-1.3215300|-0.3387726	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n340417|BC052942|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2878|NULL|-1.3215300|-0.3387726	chr5	 17379014	 17381356	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17406_PI429285431	4.8183107	P	4.8371954	P	0.986995423279703	0	lncRNA	19130-1_{1..458}	lnc-BTN2A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTN2A1-1:1	chr6	 26476350	 26476807	+	lnc-BTN2A1-1	lnc-BTN2A1-1:1	XLOC_005210	linc-BTN1A1-2	BTN2A1	NA	chr6:26466350-26476849	inter
CUST_19986_PI429285431	1.8426307	A	1.8419013	A	1.0005057093814	0	lncRNA	21639-1_{1..394}	lnc-FCGR3B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FCGR3B-2:1	chr1	161644418	161644811	-	lnc-FCGR3B-2	lnc-FCGR3B-2:1	ENSG00000234211.1	RP11-25K21.1	FCGR2B	NA	chr1:161634418-161648444	inner
CUST_28368_PI429285431	0.8967809	A	0.8955526	A	1.00085175521951	0	lncRNA	30019-1_{1..348}	n325681|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045379|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045379|-1.1607300|-0.2435716	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325681|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045379|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045379|-1.1607300|-0.2435716	chr13	 79038881	 79039228	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50275_PI429285431	1.272444	A	0.9168442	A	1.2795174296724	0	lncRNA	53998-1_{1..2973}	hg19_lincRNAsTranscripts_TCONS_l2_00029981 range=chr9:70181139-70195743 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029981 range=chr9:70181139-70195743 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 70181139	 70184111	-	NA	NA	NA	NA	FOXD4L4	NA	chr9:70181086-70205743	inter
LNCA_21_P0006823	1.6852559	A	1.1654443	A	1.43376800156244	0	lncRNA	TCONS_00017776	NA	NA	NA	NA	XLOC_008370	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008370), lincRNA [TCONS_00017776]"	chr10:6627573-6627632	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00017776	TCONS_00017776	chr10	  6627573	  6627632	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13965_PI429285431	2.3170328	A	2.041934	A	1.21007695601109	0	lncRNA	15611-1_{1..678}	lnc-IGSF11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGSF11-2:1	chr3	117409738	117410415	-	lnc-IGSF11-2	lnc-IGSF11-2:1	XLOC_003222	linc-LSAMP-2	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30"	NA	inter
CUST_21378_PI429285431	10.942822	P	11.19484	P	0.839721015974198	0	lncRNA	23000-1_{1..469}	lnc-SLC22A12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC22A12-2:1	chr11	 64426865	 64427333	+	lnc-SLC22A12-2	lnc-SLC22A12-2:1	ENSG00000237410.1	AP001092.4	NRXN2	NA	chr11:64416865-64437153	inner
LNCA_21_P0001622	1.1389786	A	1.8565923	A	0.608102446981009	0	lncRNA	TCONS_00001814	NA	NA	NA	NA	XLOC_001198	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001198), lincRNA [TCONS_00001814]"	chr1:213107279-213107220	hs|1q32.3	Agilent_HUMAN_G3V2	TCONS_00001814	TCONS_00001814	chr1	213107220	213107279	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12618_PI429285431	0.9254646	A	0.9186135	A	1.0047601141674	0	lncRNA	14233-1_{1..483}	lnc-IGSF11-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGSF11-2:3	chr3	117409738	117410220	-	lnc-IGSF11-2	lnc-IGSF11-2:3	XLOC_003222	linc-LSAMP-2	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20"	NA	inter
CUST_1555_PI429285431	5.670132	P	6.1618824	P	0.711161732412434	0	lncRNA	1542-1_{1..229}	"transcript_id ""ENST00000467896.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000467896.2"" | genecode_v17"	chr3	171185873	171186101	+	ENSG00000240497.2	ENST00000467896.2	RP11-185E8.1	RP11-185E8.1-001	TNIK	NA	chr3:171175873-171178197	inter
CUST_34160_PI429285431	3.8884265	P	4.1972613	P	0.807293510708407	0	lncRNA	35678-1_{1..207}	n341004|AJ011594|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3470|NULL|-1.2212100|-0.3141103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341004|AJ011594|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3470|NULL|-1.2212100|-0.3141103	chr11	 28151483	 28151689	-	NA	NA	NA	NA	METTL15	NA	chr11:28141483-28161690	inner
CUST_50919_PI429285431	0.89354384	A	0.893935	A	0.999728905301662	0	lncRNA	54560-1_{1..273}	hg19_lincRNAsTranscripts_TCONS_l2_00006130 range=chr12:9718839-9720128 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006130 range=chr12:9718839-9720128 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  9718839	  9719111	-	NA	NA	NA	NA	OVOS	NA	chr12:9708839-9725776	inter
CUST_46586_PI429285431	1.0869021	A	1.1368343	A	0.965981724535244	0	lncRNA	50770-1_{1..2398}	"gi|310123437|ref|XR_109251.1| PREDICTED: Homo sapiens uncharacterized LOC440337 (LOC440337), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123437|ref|XR_109251.1| PREDICTED: Homo sapiens uncharacterized LOC440337 (LOC440337), misc_RNA"	Chr16	  6427744	  6430141	+	440337	XR_109251.2	NA	NA	NA	NA	NA	inter
CUST_47622_PI429285431	11.862985	P	11.422306	P	1.3572429593905	0	lncRNA	51614-1_{1..954}	"gi|296179418|ref|NR_033669.1| Homo sapiens armadillo repeat containing, X-linked 6 (ARMCX6), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|296179418|ref|NR_033669.1| Homo sapiens armadillo repeat containing, X-linked 6 (ARMCX6), transcript variant 4, non-coding RNA"	NW_004070883.1	   296793	   297746	-	54470	NR_033669.1	NA	NA	NA	NA	NA	Unknown
CUST_41741_PI429285431	1.6552846	A	1.883298	A	0.853809784022099	0	lncRNA	43274-1_{1..63}	ENST00000578325 ncrna:miRNA chromosome:GRCh37:11:19596857:19596919:1 gene:ENSG00000265210 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578325 ncrna:miRNA chromosome:GRCh37:11:19596857:19596919:1 gene:ENSG00000265210 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 19596857	 19596919	+	ENSG00000265210	ENST00000578325	NA	NA	NAV2	NA	chr11:19586857-19606919	inner
CUST_15427_PI429285431	0.9018641	A	0.9041957	A	0.998385163287981	0	lncRNA	17112-1_{1..211}	lnc-ATP6V1D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP6V1D-1:1	chr14	 67652258	 67652468	-	lnc-ATP6V1D-1	lnc-ATP6V1D-1:1	XLOC_011057	linc-MAX-1	GPHN	NA	chr14:67642258-67648525	inter
CUST_2323_PI429285431	0.9171431	A	0.91658854	A	1.00038446558841	0	lncRNA	2315-1_{1..564}	"transcript_id ""ENST00000514186.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514186.1"" | genecode_v17"	chr5	116751205	116751768	+	ENSG00000248663.2	ENST00000514186.1	CTC-504A5.1	CTC-504A5.1-001	NA	NA	NA	inter
CUST_13377_PI429285431	0.93094546	A	0.962112	A	0.978628674181308	0	lncRNA	15012-1_{1..390}	lnc-PDE1A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE1A-1:3	chr2	183537628	183538017	-	lnc-PDE1A-1	lnc-PDE1A-1:3	XLOC_002420	linc-PDE1A	NA	NA	NA	inter
CUST_37841_PI429285431	0.8978748	A	1.0793097	A	0.881825499086624	0	lncRNA	38932-1_{1..2128}	n346366|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1916|NULL|-1.3096600|-0.2507854	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346366|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1916|NULL|-1.3096600|-0.2507854	chr17	 66097724	 66099851	+	NA	NA	NA	NA	NA	"hg19_refFlat_SH3GL1:range=chr19:4361597-44003655'pad=0,hg19_refFlat_SH3GL1:range=chr19:4361597-44003655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0,hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70"	NA	inter
CUST_25766_PI429285431	1.6040967	A	1.589336	A	1.01028385668322	0	lncRNA	27291-1_{1..575}	lnc-SMARCAL1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMARCAL1-4:1	chr2	217186292	217186866	+	lnc-SMARCAL1-4	lnc-SMARCAL1-4:1	ENSG00000233581.1	AC069155.1	4-Mar	NA	chr2:217176292-217196460	inner
CUST_51925_PI429285431	1.2586915	A	1.268302	A	0.993360647566409	0	lncRNA	55465-1_{1..2363}	hg19_lincRNAsTranscripts_TCONS_l2_00016423 range=chr20:1398083-1401802 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016423 range=chr20:1398083-1401802 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	  1398083	  1400445	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7916_PI429285431	0.9042716	A	0.9074582	A	0.997793654760154	0	lncRNA	9529-3_{6001..8344}	lnc-TMEM189-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM189-2:1	chr20	 48887905	 48890248	-	lnc-TMEM189-2	lnc-TMEM189-2:1	ENSG00000250931	ENST00000513193	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.31;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70"	NA	inter
CUST_34924_PI429285431	1.4995147	A	1.0429659	A	1.37225519405864	0	lncRNA	36345-1_{1..3000}	n341841|BX649153|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4320|NULL|-0.4680030|-0.3872813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341841|BX649153|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4320|NULL|-0.4680030|-0.3872813	chr12	 14915440	 14918439	-	NA	NA	NA	NA	H2AFJ	"hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-32.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-34.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50chr12:14927270-14930865"	NA	inter
CUST_46050_PI429285431	0.9028525	A	0.8973394	A	1.00382870054038	0	lncRNA	50325-1_{1..520}	"gi|385719218|ref|NR_047672.1| Homo sapiens solute carrier family 4, sodium bicarbonate cotransporter, member 8 (SLC4A8), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385719218|ref|NR_047672.1| Homo sapiens solute carrier family 4, sodium bicarbonate cotransporter, member 8 (SLC4A8), transcript variant 6, non-coding RNA"	Chr12	 51818594	 51819113	+	9498	NR_047672.1	NA	NA	NA	NA	NA	inter
CUST_30778_PI429285431	2.0077279	A	2.4613528	A	0.730205833805647	0	lncRNA	32565-1_{1..311}	n336630|Z46856|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327297|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327297|1.5268500|-0.1081512	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336630|Z46856|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327297|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327297|1.5268500|-0.1081512	chr2	 89544228	 89544538	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004536	0.917418	A	1.3634291	A	0.734069670111948	0	lncRNA	TCONS_00010831	NA	NA	NA	NA	XLOC_004632	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004632), lincRNA [TCONS_00010831]"	chr5:171963029-171963088	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00010831	TCONS_00010831	chr5	171963029	171963088	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30061_PI429285431	7.883456	P	7.987266	P	0.930572204098203	0	lncRNA	31830-1_{1..363}	n334573|U66051|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220906|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220906|-1.2443600|-0.1375287	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334573|U66051|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220906|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220906|-1.2443600|-0.1375287	chrX	149105667	149106029	+	NA	NA	NA	NA	CXorf40B	NA	chrX:149100415-149106716	inner
CUST_43691_PI429285431	1.0728073	A	0.91489434	A	1.11567201009445	0	lncRNA	48441-2_{3001..4816}	"gi|384081582|ref|NR_047563.1| Homo sapiens crumbs homolog 1 (Drosophila) (CRB1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384081582|ref|NR_047563.1| Homo sapiens crumbs homolog 1 (Drosophila) (CRB1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NR_047563.1	NA	NA	NA	NA	NA	Unknown
CUST_15235_PI429285431	2.4640503	A	2.6020536	A	0.908776037724833	0	lncRNA	16906-1_{1..392}	lnc-EGLN1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EGLN1-1:4	chr1	231664166	231664557	-	lnc-EGLN1-1	lnc-EGLN1-1:4	XLOC_001257	linc-EGLN1-2	TSNAX	NA	chr1:231664399-231674247	inter
LNCA_21_P0001960	0.9154292	A	0.9051144	A	1.00717529448273	0	lncRNA	ENST00000434559	NA	NA	NA	NA	XLOC_001833	NA	ENST00000434559	NA	NA	"BROAD Institute lincRNA (XLOC_001833), lincRNA [TCONS_00003093]"	chr2:213661376-213661435	hs|2q34	Agilent_HUMAN_G3V2	ENST00000434559	ENST00000434559	chr2	213661376	213661435	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51404_PI429285431	1.5240653	A	1.511817	A	1.00852601580277	0	lncRNA	54985-1_{1..2069}	hg19_lincRNAsTranscripts_TCONS_l2_00010220 range=chr16:63100447-63651969 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010220 range=chr16:63100447-63651969 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 63100447	 63102515	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22940_PI429285431	3.6197712	P	3.9905562	P	0.773361580348752	0	lncRNA	24516-1_{1..372}	lnc-RNF13-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF13-2:2	chr3	149931169	149931540	+	lnc-RNF13-2	lnc-RNF13-2:2	ENSG00000243944.1	RP11-167H9.4	NA	NA	NA	inter
LNCA_21_P0005176	0.9132324	A	1.0438166	A	0.913461481356635	0	lncRNA	TCONS_00012778	NA	NA	NA	NA	XLOC_005815	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005815), lincRNA [TCONS_00012778]"	chr6:116223104-116223045	hs|6q22.1	Agilent_HUMAN_G3V2	TCONS_00012778	TCONS_00012778	chr6	116223045	116223104	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3412548	0.91262907	A	0.9018084	A	1.00752851473256	0	lncRNA	XR_112192	XR_112192	XR_112192	100134423	NA	LOC100134423	uncharacterized LOC100134423	NA	THC2623981	NA	"PREDICTED: Homo sapiens hypothetical LOC100134423, transcript variant 1 (LOC100134423), miscRNA [XR_112192]"	chr21:19110257-19110198	hs|21q21.1	Agilent_HUMAN_G3V2	XR_112192	XR_112192	chr21	 19110198	 19110257	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22286_PI429285431	3.6904168	P	4.1390786	P	0.732722183649869	0	lncRNA	23886-1_{1..575}	lnc-CCDC71L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC71L-1:1	chr7	106372788	106373362	-	lnc-CCDC71L-1	lnc-CCDC71L-1:1	ENSG00000243797.1	CTB-111H14.1	NA	NA	NA	inter
CUST_509_PI429285431	0.91086584	A	0.91264176	A	0.998769783396735	0	lncRNA	501-1_{1..616}	"transcript_id ""ENST00000439633.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439633.1"" | genecode_v17"	chr1	185527511	185528126	+	ENSG00000228309.1	ENST00000439633.1	GS1-204I12.2	GS1-204I12.2-001	NA	NA	NA	inter
CUST_38329_PI429285431	0.88990664	A	0.88737756	A	1.00175456211742	0	lncRNA	39375-1_{1..400}	n382045|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vek.1||-0.7149520|-0.1311683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382045|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vek.1||-0.7149520|-0.1311683	chr13	 50760015	 50760414	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46854_PI429285431	9.597759	P	9.477173	P	1.08717636676872	0	lncRNA	50985-2_{3001..4928}	"gi|239835750|ref|NR_027782.1| Homo sapiens pleckstrin homology domain containing, family M (with RUN domain) member 1 (PLEKHM1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239835750|ref|NR_027782.1| Homo sapiens pleckstrin homology domain containing, family M (with RUN domain) member 1 (PLEKHM1), transcript variant 3, non-coding RNA"	Chr17	 43516266	 43518193	-	9842	NR_027782.1	NA	NA	NA	NA	NA	inter
CUST_39411_PI429285431	0.9245485	A	0.88892484	A	1.02499982257237	0	lncRNA	40372-1_{1..3000}	n386653|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ree.1||-1.1192800|-0.1737375	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386653|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ree.1||-1.1192800|-0.1737375	chr11	 32457584	 32460583	+	NA	NA	NA	NA	WT1	NA	chr11:32447584-32457081	inter
CUST_48629_PI429285431	4.9792767	P	5.4324408	P	0.730439100421561	0	lncRNA	52476-1_{1..2232}	hg19_lincRNAsTranscripts_TCONS_l2_00013761 range=chr2:89082260-89106853 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013761 range=chr2:89082260-89106853 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 89082260	 89084491	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40"	NA	inter
CUST_22698_PI429285431	3.4521534	P	3.7602654	P	0.807698071567829	0	lncRNA	24281-1_{1..356}	lnc-ID1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ID1-1:1	chr20	 30151777	 30152132	+	lnc-ID1-1	lnc-ID1-1:1	ENSG00000235313.1	HM13-IT1	HM13	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_GABRG2:range=chr5:161495006-1615803745'pad=0,hg19_refFlat_GABRG2:range=chr5:161495006-1615803745'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.91;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-25.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60chr20:30141777-30157370"	NA	inner
LNCA_21_P0013458	0.909713	A	0.8983532	A	1.00790509491011	0	lncRNA	ENST00000453187	NA	NA	NA	NA	XLOC_l2_014061	NA	ENST00000453187	THC2607578	NA	"BROAD Institute lincRNA (XLOC_l2_014061), lincRNA [TCONS_l2_00027523]"	chr7:153102637-153102578	hs|7q36.2	Agilent_HUMAN_G3V2	ENST00000453187	ENST00000453187	chr7	153102578	153102637	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18345_PI429285431	2.170807	A	0.9015154	A	2.41043178136839	0	lncRNA	20074-1_{1..3000}	lnc-CCDC96-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CCDC96-1:1	chr4	  7047386	  7050385	-	lnc-CCDC96-1	lnc-CCDC96-1:1	ENSG00000245748	RP11-367J11.2	TADA2B	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80chr4:7045156-7057958"	NA	inter
CUST_9479_PI429285431	0.9079573	A	0.8981582	A	1.00681533796779	0	lncRNA	10986-1_{1..2983}	lnc-ZCCHC17-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZCCHC17-6:1	chr1	 30731265	 30734247	+	lnc-ZCCHC17-6	lnc-ZCCHC17-6:1	XLOC_000118	linc-ZCCHC17-5	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40"	NA	inter
CUST_32093_PI429285431	2.7458277	A	2.8805985	A	0.910814522594757	0	lncRNA	33799-1_{1..3000}	n338656|AK095374|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1070|NULL|-1.1321900|-0.2718374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338656|AK095374|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1070|NULL|-1.1321900|-0.2718374	chr13	 37717103	 37720102	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_113_PI429201921	1.2347282	A	1.0484296	A	1.13784070665852	0	lncRNA	112-1_{1..3000}	TC10002625.hg.1	TCONS_l2_00003557-XLOC_l2_001971 // Broad TUCP // linc-FAM25C-2 chr10:-:49255087-49258429 // chr10 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr10:-:49255087-49258429	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00003557-XLOC_l2_001971	linc-FAM25C-2	chr10	 49255087	 49258429	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16836_PI429285431	0.9114842	A	0.90043986	A	1.00768473026419	0	lncRNA	18543-1_{1..468}	lnc-MYL2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYL2-3:1	chr12	111463349	111463816	-	lnc-MYL2-3	lnc-MYL2-3:1	XLOC_010200	linc-MYL2-3	CUX2	NA	chr12:111471828-111473625	inter
CUST_22297_PI429285431	0.9101413	A	0.9116158	A	0.998978476592896	0	lncRNA	23897-1_{1..585}	lnc-RNMTL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNMTL1-1:1	chr17	   783120	   783704	+	lnc-RNMTL1-1	lnc-RNMTL1-1:1	ENSG00000262133.1	RP11-676J12.6	NXN	NA	chr17:773120-793333	inner
CUST_32907_PI429285431	6.246445	P	6.5222588	P	0.825984262893645	0	lncRNA	34532-1_{1..1399}	n339577|AF143323|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2021|NULL|-1.0937400|-0.2985038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339577|AF143323|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2021|NULL|-1.0937400|-0.2985038	chr20	 10002622	 10004020	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26581_PI429285431	6.7195992	P	6.7534795	P	0.976789569554879	0	lncRNA	28085-1_{1..561}	lnc-SLC39A11-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC39A11-1:14	chr17	 70441154	 70441714	-	lnc-SLC39A11-1	lnc-SLC39A11-1:14	ENSG00000227036.2	LINC00511	NA	"hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70"	NA	inter
LNCA_21_P0013376	0.9101223	A	1.0081831	A	0.934287972029815	0	lncRNA	THC2653824	NA	NA	NA	NA	XLOC_l2_013314	NA	NA	THC2653824	NA	"BROAD Institute lincRNA (XLOC_l2_013314), lincRNA [TCONS_l2_00027076]"	NA	NA	Agilent_HUMAN_G3V2	THC2653824	THC2653824	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18935_PI429285431	6.88123	P	6.8220286	P	1.04188886637777	0	lncRNA	20627-1_{1..1170}	lnc-BET1L-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BET1L-1:4	chr11	   131120	   132289	-	lnc-BET1L-1	lnc-BET1L-1:4	ENSG00000230724	RP11-304M2.2	NA	NA	NA	inter
CUST_31915_PI429285431	0.8916426	A	0.90795493	A	0.988756836589581	0	lncRNA	33645-1_{1..3000}	n338471|AK126062|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|868|NULL|-1.1303100|-0.2869064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338471|AK126062|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|868|NULL|-1.1303100|-0.2869064	chr14	 97459200	 97462199	+	NA	NA	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50"	NA	inter
CUST_39696_PI429285431	1.5485364	A	0.9097661	A	1.5570014629868	0	lncRNA	40635-1_{1..3000}	n405483|NR_002328|lncRNA|Homosapiens||RefGeneNoncode|NR_002328||1.9532700|-0.3021892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405483|NR_002328|lncRNA|Homosapiens||RefGeneNoncode|NR_002328||1.9532700|-0.3021892	chr1	145509819	145512818	-	NA	NA	NA	NA	ITGA10	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70chr1:145524990-145526076"	NA	inter
CUST_35177_PI429285431	0.91337514	A	1.0100546	A	0.935182954926327	0	lncRNA	36579-1_{1..2462}	n342156|AL050116|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4643|NULL|-0.8143360|-0.3570334	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342156|AL050116|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4643|NULL|-0.8143360|-0.3570334	chr6	152278723	152281184	+	NA	NA	NA	NA	ESR1	NA	chr6:152268723-152291069	inner
CUST_31384_PI429285431	1.0610435	A	1.0148492	A	1.03253758672989	0	lncRNA	33162-1_{1..1393}	n337850|BC031866|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|233|NULL|-0.8913170|-0.2007079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n337850|BC031866|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|233|NULL|-0.8913170|-0.2007079	chr1	 34334556	 34335948	+	NA	NA	NA	NA	CSMD2	NA	chr1:34324556-34361059	inner
CUST_40587_PI429285431	0.8930886	A	1.1438749	A	0.840438233391285	0	lncRNA	41337-1_{1..3000}	n410051|NR_036489|lncRNA|Homosapiens||RefGeneNoncode|NR_036489||1.5274000|-0.2779439	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410051|NR_036489|lncRNA|Homosapiens||RefGeneNoncode|NR_036489||1.5274000|-0.2779439	chr18	  4264601	  4267600	+	NA	NA	NA	NA	DLGAP1	NA	chr18:4254601-4306000	inner
CUST_12501_PI429285431	5.3480735	P	5.2137775	P	1.09755710198857	0	lncRNA	14113-1_{1..2469}	lnc-C12orf75-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C12orf75-1:1	chr12	105804490	105806958	+	lnc-C12orf75-1	lnc-C12orf75-1:1	XLOC_009868	linc-TCP11L2-2	NA	NA	NA	inter
CUST_16444_PI429285431	0.89512134	A	0.91273594	A	0.987864723318555	0	lncRNA	18143-1_{1..726}	lnc-AGTRAP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AGTRAP-1:1	chr1	 11825914	 11826639	+	lnc-AGTRAP-1	lnc-AGTRAP-1:1	XLOC_000054	linc-CLCN6	C1orf167	NA	chr1:11826805-11836573	inter
CUST_38186_PI429285431	0.9004278	A	0.8906532	A	1.00679824026825	0	lncRNA	39253-1_{1..1072}	n381456|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jhk.1||1.5640100|-0.2408761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n381456|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jhk.1||1.5640100|-0.2408761	chr10	 50345539	 50346610	+	NA	NA	NA	NA	C10orf128	NA	chr10:50363890-50369590	inter
CUST_10855_PI429285431	0.93888307	A	0.9120033	A	1.01880628873197	0	lncRNA	12393-1_{1..1203}	lnc-TTC24-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC24-1:1	chr1	156482102	156483304	+	lnc-TTC24-1	lnc-TTC24-1:1	XLOC_000424	linc-TTC24-1	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00"	NA	inter
CUST_31609_PI429285431	4.7600374	P	4.667192	P	1.06647149103227	0	lncRNA	33365-1_{1..1310}	n338122|BC020301|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|510|NULL|4.1621000|-0.0804758	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338122|BC020301|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|510|NULL|4.1621000|-0.0804758	chr15	 90544722	 90546031	+	NA	NA	NA	NA	ZNF710	NA	chr15:90610342-90621527	inner
CUST_12212_PI429285431	0.8971294	A	0.8954198	A	1.00118570681504	0	lncRNA	13815-1_{1..300}	lnc-C15orf2-11:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-11:2	chr15	 24426065	 24426364	+	lnc-C15orf2-11	lnc-C15orf2-11:2	XLOC_011172	linc-C15orf2-10	NA	NA	NA	inter
CUST_38209_PI429285431	3.3930988	P	3.6042647	P	0.863838846166881	0	lncRNA	39276-1_{1..982}	n381568|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lfe.1||-0.9352140|-0.3493697	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381568|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lfe.1||-0.9352140|-0.3493697	chr10	122666806	122667787	+	NA	NA	NA	NA	WDR11	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50chr10:122656806-122669038"	NA	inter
CUST_23595_PI429285431	4.687645	P	3.857005	P	1.77847414373949	0	lncRNA	25161-1_{1..2451}	lnc-C2orf42-3:33	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:33	chr2	 70313187	 70315637	-	lnc-C2orf42-3	lnc-C2orf42-3:33	ENSG00000179818.6	PCBP1-AS1	PCBP1	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10chr2:70314585-70316335"	NA	inter
CUST_40754_PI429285431	5.1414437	P	5.3903856	P	0.841513370904245	0	lncRNA	41480-2_{3001..3352}	n410471|NR_037616|lncRNA|Homosapiens||RefGeneNoncode|NR_037616||2.2888500|-0.2209728	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410471|NR_037616|lncRNA|Homosapiens||RefGeneNoncode|NR_037616||2.2888500|-0.2209728	chr6	  7884482	  7884833	-	NA	NA	NA	NA	BMP6	NA	chr6:7871482-7881961	inter
CUST_46236_PI429285431	1.0090234	A	0.90017784	A	1.07836498692037	0	lncRNA	50476-1_{1..958}	"gi|386642906|ref|NR_047699.1| Homo sapiens long intergenic non-protein coding RNA 348 (LINC00348), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|386642906|ref|NR_047699.1| Homo sapiens long intergenic non-protein coding RNA 348 (LINC00348), non-coding RNA"	NA	NA	NA	NA	NA	NR_047699.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014298	7.423132	P	7.606308	P	0.880761919987818	0	lncRNA	ENST00000553321	XR_109220	XR_109220	NA	Hs.729721	LOC100288997	NA	ENST00000553321	THC2618499	NA	"PREDICTED: Homo sapiens hypothetical LOC100288997 (LOC100288997), miscRNA [XR_109220]"	chr15:91496198-91496139	hs|15q26.1	Agilent_HUMAN_G3V2	ENST00000553321	ENST00000553321	chr15	 91496139	 91496198	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27555_PI429285431	6.4459085	P	5.3823786	P	2.09003905337228	0	lncRNA	29135-1_{1..3000}	n324746|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319010|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319010|1.0929300|-0.3373299	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324746|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319010|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319010|1.0929300|-0.3373299	chr22	 18706327	 18709326	+	NA	NA	NA	NA	LOC642643	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20chr22:18703328-18737841"	NA	inter
CUST_13856_PI429285431	0.9231254	A	1.1139199	A	0.876123102683543	0	lncRNA	15499-1_{1..456}	lnc-RP11-58C22.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-58C22.1.1-3:1	chr16	 76806570	 76807025	+	lnc-RP11-58C22.1.1-3	lnc-RP11-58C22.1.1-3:1	XLOC_011793	linc-MON1B-1	NA	NA	NA	inter
CUST_13499_PI429285431	4.59822	P	5.28123	P	0.622864390402813	0	lncRNA	15139-1_{1..599}	lnc-COL5A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL5A1-1:1	chr9	137521194	137521792	+	lnc-COL5A1-1	lnc-COL5A1-1:1	XLOC_007602	linc-COL5A1-1	NA	NA	NA	inter
CUST_15003_PI429285431	0.92647934	A	2.522042	A	0.33089315205196	0	lncRNA	16665-1_{1..245}	lnc-ZIC1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZIC1-3:1	chr3	147541117	147541361	+	lnc-ZIC1-3	lnc-ZIC1-3:1	XLOC_002858	linc-AGTR1-5	NA	NA	NA	inter
CUST_40015_PI429285431	2.708825	A	2.7674441	P	0.960182734792624	0	lncRNA	40876-1_{1..1264}	n407166|NR_026585|lncRNA|Homosapiens||RefGeneNoncode|NR_026585||1.1560000|-0.4068816	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407166|NR_026585|lncRNA|Homosapiens||RefGeneNoncode|NR_026585||1.1560000|-0.4068816	chr7	 86974950	 86976213	+	NA	NA	NA	NA	CROT	NA	chr7:86974951-86999425	inner
CUST_4473_PI429285431	0.91489923	A	0.9048198	A	1.00701099121296	0	lncRNA	4422-1_{1..775}	"transcript_id ""ENST00000539588.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539588.1"" | genecode_v17"	chr12	126842580	126843354	+	ENSG00000257061.1	ENST00000539588.1	RP4-809F18.2	RP4-809F18.2-001	NA	NA	NA	inter
CUST_41420_PI429285431	3.0547743	A	2.9304595	A	1.08998992504666	0	lncRNA	42567-1_{1..87}	ENST00000385002 ncrna:miRNA chromosome:GRCh37:19:54223350:54223436:1 gene:ENSG00000207735 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385002 ncrna:miRNA chromosome:GRCh37:19:54223350:54223436:1 gene:ENSG00000207735 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54223350	 54223436	+	ENSG00000207735	ENST00000385002	NA	NA	NA	NA	NA	inter
CUST_1185_PI429285431	0.92497444	A	0.91280997	A	1.00846741555999	0	lncRNA	1175-1_{1..533}	"transcript_id ""ENST00000456446.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456446.1"" | genecode_v17"	chr2	182286881	182287413	-	ENSG00000226681.1	ENST00000456446.1	AC020595.1	AC020595.1-001	NA	NA	NA	inter
LNCA_21_P0006945	0.9309507	A	0.9174275	A	1.00941763742868	0	lncRNA	ENST00000439973	NA	NA	NA	NA	XLOC_008688	NA	ENST00000439973	NA	NA	"BROAD Institute lincRNA (XLOC_008688), lincRNA [TCONS_00018400]"	chr10:2488539-2488480	hs|10p15.3	Agilent_HUMAN_G3V2	ENST00000439973	ENST00000439973	chr10	  2488480	  2488539	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1109_PI429285431	1.5353094	A	0.9799141	A	1.46957124222635	0	lncRNA	1098-1_{1..491}	"transcript_id ""ENST00000423031.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423031.1"" | genecode_v17"	chr2	145780662	145781152	+	ENSG00000226674.3	ENST00000423031.1	AC074093.1	AC074093.1-007	NA	NA	NA	inter
CUST_27513_PI429285431	1.1528342	A	0.9068359	A	1.18591310198918	0	lncRNA	29083-1_{1..274}	n324691|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320632|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320632|-1.3723900|-0.2243217	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324691|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320632|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320632|-1.3723900|-0.2243217	chr22	 26002200	 26002473	+	NA	NA	NA	NA	ADRBK2	"hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0,hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20chr22:25992200-26022310"	NA	inner
CUST_28103_PI429285431	5.8784733	P	6.3322754	P	0.730116151285051	0	lncRNA	29725-1_{1..579}	n325375|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324013|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324013|-1.0838100|-0.2502968	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325375|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324013|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324013|-1.0838100|-0.2502968	chr2	 22020985	 22021563	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_56_PI429201921	0.9030494	A	0.8968382	A	1.00431455678194	0	lncRNA	58-1_{1..1636}	TC04002158.hg.1	TCONS_00007603-XLOC_003661 // Rinn lincRNAs // linc-METTL14-3 chr4:+:119348947-119350584 // chr4 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr4:+:119348947-119350584	NA	Affy_HUMAN_HTA2.0	TCONS_00007603-XLOC_003661	linc-METTL14-3	chr4	119348947	119350584	+	NA	NA	NA	NA	KIF22	NA	chr16:29802058-29804294	Unknown
CUST_38572_PI429285431	0.91250235	A	0.89903796	A	1.00937649038122	0	lncRNA	39584-1_{1..454}	n383545|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002pyb.2||-1.1200200|-0.1800906	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383545|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002pyb.2||-1.1200200|-0.1800906	chr19	 52452414	 52452867	+	NA	NA	NA	NA	ZNF350	NA	chr19:52467593-52489596	inner
CUST_49535_PI429285431	1.0931041	A	0.9182858	A	1.12882222651524	0	lncRNA	53327-1_{1..437}	hg19_lincRNAsTranscripts_TCONS_l2_00024782 range=chr6:49913731-49925733 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024782 range=chr6:49913731-49925733 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 49913731	 49914167	-	NA	NA	NA	NA	DEFB114	NA	chr6:49928005-49931818	inner
CUST_39459_PI429285431	0.89990944	A	0.89603066	A	1.0026921828542	0	lncRNA	40403-1_{1..1372}	n386978|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vwq.1||2.4455400|-0.2364667	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386978|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vwq.1||2.4455400|-0.2364667	chr17	 16691072	 16692443	+	NA	NA	NA	NA	NA	"hg19_refFlat_SRP68:range=chr17:74035787-740465685'pad=0,hg19_refFlat_SRP68:range=chr17:74035787-740465685'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_SRP68:range=chr17:74035787-740685725'pad=0,hg19_refFlat_SRP68:range=chr17:74035787-740685725'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60"	NA	inter
CUST_37923_PI429285431	5.5032477	P	4.127235	P	2.5955003818877	0	lncRNA	39012-1_{1..1930}	n346464|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2014|NULL|-1.3480900|-0.3299866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n346464|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2014|NULL|-1.3480900|-0.3299866	chr15	 45021302	 45023231	+	NA	NA	NA	NA	TRIM69	NA	chr15:45028560-45035042	inter
CUST_26289_PI429285431	6.4007883	P	6.168157	P	1.17497600922285	0	lncRNA	27795-1_{1..1318}	lnc-AC135048.13.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC135048.13.1-1:1	chr16	 30964506	 30965823	+	lnc-AC135048.13.1-1	lnc-AC135048.13.1-1:1	ENSG00000261487.1	AC135048.13	SETD1A	NA	chr16:30968615-30975640	inner
CUST_36502_PI429285431	3.9591308	P	4.091523	P	0.912317439212314	0	lncRNA	37701-1_{1..2753}	n345002|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_551|NULL|-1.5530500|-0.1972888	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345002|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_551|NULL|-1.5530500|-0.1972888	chr8	 58120567	 58123319	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011981	0.9178356	A	0.9228014	A	0.99656388672619	0	lncRNA	ENST00000427108	NA	NA	NA	NA	XLOC_l2_008381	NA	ENST00000427108	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008381), lincRNA [TCONS_l2_00015026]"	chr2:186923543-186923484	hs|2q32.1	Agilent_HUMAN_G3V2	ENST00000427108	ENST00000427108	chr2	186923484	186923543	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2965_PI429285431	4.563155	P	4.371254	P	1.14226785994415	0	lncRNA	2944-1_{1..1517}	"transcript_id ""ENST00000602608.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602608.1"" | genecode_v17"	chr8	   326243	   327759	-	ENSG00000182366.4	ENST00000602608.1	FAM87A	FAM87A-003	NA	NA	NA	inter
LNCA_21_P0009545	0.9201676	A	0.92393804	A	0.997389942283717	0	lncRNA	TCONS_00026493	NA	NA	NA	NA	XLOC_012819	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012819), lincRNA [TCONS_00026493]"	chr18:36046542-36046483	hs|18q12.2	Agilent_HUMAN_G3V2	TCONS_00026493	TCONS_00026493	chr18	 36046483	 36046542	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13469_PI429285431	2.9553576	A	2.2865753	A	1.58973059640574	0	lncRNA	15107-1_{1..416}	lnc-KCNA4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KCNA4-2:2	chr11	 30068882	 30069297	-	lnc-KCNA4-2	lnc-KCNA4-2:2	XLOC_009401	linc-KCNA4-1	NA	NA	NA	inter
CUST_19427_PI429285431	4.7285113	P	4.249204	P	1.39407415061425	0	lncRNA	21088-1_{1..3000}	lnc-C17orf89-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf89-1:1	chr17	 79207739	 79210738	+	lnc-C17orf89-1	lnc-C17orf89-1:1	ENSG00000260005.2	AC027601.1	C17orf56	"hg19_refFlat_ENTHD2:range=chr17:79202728-792128335'pad=0,hg19_refFlat_ENTHD2:range=chr17:79202728-792128335'pad=0 3'pad=0 strand=- repeatMasking=none,-105.80chr17:79202077-79212891"	NA	inner
CUST_45863_PI429285431	6.871786	P	7.321703	P	0.732084964499507	0	lncRNA	50192-1_{1..483}	"gi|397139417|ref|XR_159128.1| PREDICTED: Homo sapiens uncharacterized LOC100996578 (LOC100996578), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139417|ref|XR_159128.1| PREDICTED: Homo sapiens uncharacterized LOC100996578 (LOC100996578), misc_RNA"	NA	NA	NA	NA	NA	XR_159128.1	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-27.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90"	NA	Unknown
CUST_19864_PI429285431	0.90787554	A	0.9066192	A	1.00087120781008	0	lncRNA	21521-1_{1..375}	lnc-PPIAL4B-2:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PPIAL4B-2:17	chr1	144470446	144470820	-	lnc-PPIAL4B-2	lnc-PPIAL4B-2:17	ENSG00000236943.1	AL592284.1	NA	NA	NA	inter
CUST_28913_PI429285431	3.9434748	P	3.8253205	P	1.08534544620265	0	lncRNA	30630-1_{1..1491}	n326338|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086102|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086102|0.2616400|-0.2461611	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326338|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086102|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086102|0.2616400|-0.2461611	chr1	167678499	167679989	-	NA	NA	NA	NA	RCSD1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60chr1:167668499-167675486"	NA	inner
CUST_6593_PI429285431	2.932037	P	3.179267	P	0.842512502207886	0	lncRNA	6541-1_{1..1115}	"transcript_id ""ENST00000589698.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589698.1"" | genecode_v17"	chr19	 56207681	 56208795	+	ENSG00000267018.1	ENST00000589698.1	AC010525.7	AC010525.7-001	EPN1	NA	chr19:56197681-56207133	inter
CUST_25554_PI429285431	1.0032964	A	0.90813243	A	1.06818680628701	0	lncRNA	27083-1_{1..587}	lnc-PTPN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPN3-1:1	chr9	112140823	112141409	-	lnc-PTPN3-1	lnc-PTPN3-1:1	ENSG00000244202.1	RP11-18A3.4	PTPN3	"hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0,hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0 3'pad=0 strand=- repeatMasking=none,-62.90chr9:112137974-112151260"	NA	inner
CUST_29147_PI429285431	0.92368054	A	0.9545701	A	0.978816577088251	0	lncRNA	30890-1_{1..444}	n326657|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000010457|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000010457|1.8838600|-0.5018520	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326657|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000010457|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000010457|1.8838600|-0.5018520	chr1	 31055811	 31056254	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51917_PI429285431	0.9192917	A	0.91327965	A	1.00417593050661	0	lncRNA	55459-1_{1..503}	hg19_lincRNAsTranscripts_TCONS_l2_00016335 range=chr20:50827178-51069097 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016335 range=chr20:50827178-51069097 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 50827178	 50827680	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45859_PI429285431	0.8950808	A	1.1138828	A	0.859278676960271	0	lncRNA	50188-1_{1..794}	"gi|397139411|ref|XR_159125.1| PREDICTED: Homo sapiens uncharacterized LOC100506113, transcript variant 2 (LOC100506113), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139411|ref|XR_159125.1| PREDICTED: Homo sapiens uncharacterized LOC100506113, transcript variant 2 (LOC100506113), misc_RNA"	NA	NA	NA	NA	NA	XR_159125.1	NA	NA	NA	NA	NA	Unknown
CUST_46069_PI429285431	7.7282076	P	7.9861035	P	0.836306742806063	0	lncRNA	50341-2_{3001..3366}	"gi|302191712|ref|NR_036477.1| Homo sapiens transmembrane protein 198B, pseudogene (TMEM198B), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|302191712|ref|NR_036477.1| Homo sapiens transmembrane protein 198B, pseudogene (TMEM198B), transcript variant 2, non-coding RNA"	Chr12	 56226392	 56226757	+	440104	NR_036477.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20"	NA	inter
CUST_39410_PI429285431	4.324461	P	4.601611	P	0.825219604255806	0	lncRNA	40371-1_{1..3000}	n386652|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010red.1||1.8100600|-0.1940823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386652|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010red.1||1.8100600|-0.1940823	chr11	 32457584	 32460583	+	NA	NA	NA	NA	WT1	NA	chr11:32447584-32457081	inter
CUST_34634_PI429285431	2.352039	A	2.1921575	A	1.11719537017617	0	lncRNA	36087-1_{1..1281}	n341527|BC038549|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3997|NULL|-0.7977110|-0.3111674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341527|BC038549|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3997|NULL|-0.7977110|-0.3111674	chr8	 70746363	 70747643	+	NA	NA	NA	NA	SLCO5A1	NA	chr8:70736363-70747299	inner
CUST_46048_PI429285431	0.92650354	A	0.9278232	A	0.999085699619239	0	lncRNA	50324-1_{1..3000}	"gi|223890226|ref|NR_026893.1| Homo sapiens POU class 6 homeobox 1 (POU6F1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223890226|ref|NR_026893.1| Homo sapiens POU class 6 homeobox 1 (POU6F1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_026893.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30"	NA	Unknown
CUST_34536_PI429285431	1.8909523	A	1.5761776	A	1.24381739606884	0	lncRNA	35997-2_{3001..3367}	n341415|BX647732|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3885|NULL|-0.5537880|-0.3082556	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341415|BX647732|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3885|NULL|-0.5537880|-0.3082556	chr8	 10716594	 10716960	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8444_PI429285431	5.8395567	P	6.1162624	P	0.825473782389474	0	lncRNA	10014-1_{1..3000}	lnc-TESC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TESC-1:1	chr12	117423459	117426458	-	lnc-TESC-1	lnc-TESC-1:1	ENSG00000250998	ENSG00000257279.1	FBXW8	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_FBXW8:range=chr12:117348843-1174659775'pad=0,hg19_refFlat_FBXW8:range=chr12:117348843-1174659775'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.90chr12:117413459-117435142"	NA	inner
CUST_26794_PI429285431	5.6300898	P	5.966041	P	0.792261609182086	0	lncRNA	28302-1_{1..532}	n323858|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058911|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058911|-1.3980000|-0.2701904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323858|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058911|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058911|-1.3980000|-0.2701904	chrX	 70850945	 70851476	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17267_PI429285431	7.634813	P	7.5796123	P	1.03900363385986	0	lncRNA	18985-1_{1..1508}	lnc-RTL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RTL1-2:1	chr14	101539723	101541230	-	lnc-RTL1-2	lnc-RTL1-2:1	XLOC_011130	linc-RTL1-6	NA	NA	NA	inter
CUST_9836_PI429285431	0.9275823	A	0.916815	A	1.00749124365258	0	lncRNA	11356-1_{1..1166}	lnc-RTL1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RTL1-5:2	chr14	101800570	101801735	-	lnc-RTL1-5	lnc-RTL1-5:2	XLOC_011133	linc-RTL1-8	NA	NA	NA	inter
CUST_23921_PI429285431	3.8889663	P	4.2206187	P	0.794625832560535	0	lncRNA	25478-1_{1..721}	lnc-ISCA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ISCA2-1:1	chr14	 74967232	 74967952	+	lnc-ISCA2-1	lnc-ISCA2-1:1	ENSG00000258579.1	RP3-449M8.3	LTBP2	NA	chr14:74964886-74977501	inner
CUST_43598_PI429285431	11.043599	P	11.01286	P	1.0215352586082	0	lncRNA	48361-1_{1..670}	"gi|225007561|ref|NR_027355.1| Homo sapiens lymphocyte-specific protein 1 pseudogene (LOC645166), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|225007561|ref|NR_027355.1| Homo sapiens lymphocyte-specific protein 1 pseudogene (LOC645166), transcript variant 2, non-coding RNA"	NW_003871055.3	  1531492	  1532161	+	645166	NR_027355.2	NA	NA	NA	NA	NA	Unknown
CUST_11714_PI429285431	0.9135327	A	1.1265734	A	0.862717006012034	0	lncRNA	13292-1_{1..228}	lnc-GOLGA8A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GOLGA8A-1:1	chr15	 34962302	 34962529	-	lnc-GOLGA8A-1	lnc-GOLGA8A-1:1	XLOC_011421	linc-GOLGA8B-2	NA	NA	NA	inter
CUST_38971_PI429285431	5.436989	P	5.2577705	P	1.13227037448424	0	lncRNA	39955-1_{1..1722}	n385195|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tue.2||10.7617000|-0.2156478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385195|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tue.2||10.7617000|-0.2156478	chr7	 65112776	 65114497	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18825_PI429285431	1.0452209	A	1.4367719	A	0.762309626608142	0	lncRNA	20519-1_{1..1155}	lnc-KCNC3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNC3-1:2	chr19	 50847930	 50849084	-	lnc-KCNC3-1	lnc-KCNC3-1:2	ENSG00000131401	NAPSB	NA	NA	NA	inter
LNCA_21_P0008660	0.91941774	A	0.9104155	A	1.00625938586489	0	lncRNA	TCONS_00023478	NA	NA	NA	NA	XLOC_011326	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011326), lincRNA [TCONS_00023478]"	chr15:79709337-79709649	hs|15q25.1	Agilent_HUMAN_G3V2	TCONS_00023478	TCONS_00023478	chr15	 79709337	 79709649	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9163_PI429285431	5.4265246	P	5.746004	P	0.80135899775702	0	lncRNA	10681-1_{1..2852}	lnc-ACOT1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ACOT1-3:1	chr14	 73946497	 73949348	+	lnc-ACOT1-3	lnc-ACOT1-3:1	ENSG00000251393	ENST00000515412	HEATR4	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_HEATR4:range=chr14:73945311-739898565'pad=0,hg19_refFlat_HEATR4:range=chr14:73945311-739898565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr14:73945189-73956655"	NA	inner
LNCA_21_P0006847	2.0348635	A	0.90826035	A	2.18344039800826	0	lncRNA	TCONS_00018147	NA	NA	NA	NA	XLOC_008426	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008426), lincRNA [TCONS_00018147]"	chr10:29222669-29264207	hs|10p12.1	Agilent_HUMAN_G3V2	TCONS_00018147	TCONS_00018147	chr10	 29222669	 29264207	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_455_PI429285431	0.9156678	A	0.9157169	A	0.999965967052569	0	lncRNA	447-1_{1..2254}	"transcript_id ""ENST00000427145.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427145.1"" | genecode_v17"	chr1	153146994	153149247	+	ENSG00000229699.1	ENST00000427145.1	RP1-140J1.1	RP1-140J1.1-001	NA	NA	NA	inter
CUST_27609_PI429285431	0.91924936	A	1.0535169	A	0.911132300407413	0	lncRNA	29186-3_{6001..9000}	n324811|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141032|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141032|1.5746900|-0.2886780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324811|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141032|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141032|1.5746900|-0.2886780	chr21	 34231333	 34234332	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80"	NA	inter
LNCA_21_P0009372	0.915867	A	2.063258	A	0.45144088873789	0	lncRNA	TCONS_00025789	NA	NA	NA	NA	XLOC_012596	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012596), lincRNA [TCONS_00025789]"	chr17:80663178-80663119	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_00025789	TCONS_00025789	chr17	 80663119	 80663178	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38021_PI429285431	2.6936927	A	3.3126593	P	0.651137169162044	0	lncRNA	39107-1_{1..1179}	n377595|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029964||-1.1584600|-0.3078486	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377595|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029964||-1.1584600|-0.3078486	chr6	  2724339	  2725517	+	NA	NA	NA	NA	MYLK4	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-23.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10chr6:2714339-2735518"	NA	inner
CUST_28934_PI429285431	5.832663	P	6.209106	P	0.770334529880965	0	lncRNA	30653-1_{1..1999}	n326361|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058352|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058352|-1.0103100|-0.2080962	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326361|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058352|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058352|-1.0103100|-0.2080962	chr1	156434335	156436333	-	NA	NA	NA	NA	MEF2D	NA	chr1:156433519-156450291	inner
CUST_21338_PI429285431	8.327549	P	8.473515	P	0.903774025746313	0	lncRNA	22961-1_{1..360}	lnc-RPL24-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPL24-1:1	chr3	101543536	101543895	-	lnc-RPL24-1	lnc-RPL24-1:1	ENSG00000249474.1	RP11-49I4.3	FAM55C	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-54.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90chr3:101533536-101547075"	NA	inner
LNCA_21_P0012443	5.446512	P	5.747731	P	0.811566376473235	0	lncRNA	TCONS_l2_00019333	NA	NA	NA	NA	XLOC_l2_010226	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010226), lincRNA [TCONS_l2_00019333]"	chr3:63752192-63752133	hs|3p14.1	Agilent_HUMAN_G3V2	TCONS_l2_00019333	TCONS_l2_00019333	chr3	 63752133	 63752192	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4491_PI429285431	1.2129923	A	1.3054793	A	0.937904541490489	0	lncRNA	4440-1_{1..402}	"transcript_id ""ENST00000545508.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000545508.1"" | genecode_v17"	chr12	127236710	127237111	-	ENSG00000256128.1	ENST00000545508.1	RP11-173C20.2	RP11-173C20.2-004	NA	NA	NA	inter
CUST_13691_PI429285431	1.5401608	A	1.8926735	A	0.783218799883735	0	lncRNA	15331-1_{1..428}	lnc-SH3D19-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SH3D19-1:4	chr4	152328641	152329068	-	lnc-SH3D19-1	lnc-SH3D19-1:4	XLOC_004122	linc-SH3D19	FAM160A1	NA	chr4:152330398-152338921	inter
CUST_1660_PI429285431	6.4857206	P	5.964309	P	1.43535898322351	0	lncRNA	1645-1_{1..764}	"transcript_id ""ENST00000455807.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455807.2"" | genecode_v17"	chr3	195435351	195436114	+	ENSG00000242086.3	ENST00000455807.2	AC069513.3	AC069513.3-005	MUC20	NA	chr3:195447753-195461952	inner
CUST_18977_PI429285431	3.4221919	P	3.7096958	P	0.819318388697945	0	lncRNA	20669-1_{1..264}	lnc-IER3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-IER3-5:1	chr6	 30798292	 30798555	-	lnc-IER3-5	lnc-IER3-5:1	ENSG00000214894	NCRNA00243	NA	NA	NA	inter
CUST_50399_PI429285431	3.7628531	P	4.2741675	P	0.701582953561308	0	lncRNA	54103-1_{1..412}	hg19_lincRNAsTranscripts_TCONS_l2_00030117 range=chrX:1866425-1874976 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030117 range=chrX:1866425-1874976 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	  1866425	  1866836	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39785_PI429285431	7.6060467	P	9.541483	P	0.261442157624106	0	lncRNA	40698-2_{3001..5136}	n406123|NR_003512|lncRNA|Homosapiens||RefGeneNoncode|NR_003512||3.2715800|-0.1246561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406123|NR_003512|lncRNA|Homosapiens||RefGeneNoncode|NR_003512||3.2715800|-0.1246561	chr11	  2153341	  2155476	-	NA	NA	NA	NA	IGF2	NA	chr11:2150347-2170833	inner
CUST_12950_PI429285431	1.0126281	A	0.9046359	A	1.07772731824343	0	lncRNA	14578-1_{1..531}	lnc-ZNF680-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF680-3:1	chr7	 63490375	 63490905	-	lnc-ZNF680-3	lnc-ZNF680-3:1	XLOC_006468	linc-ZNF479-7	NA	NA	NA	inter
CUST_42033_PI429285431	2.8211374	A	3.081983	P	0.834598596724117	0	lncRNA	43907-1_{1..97}	ENST00000384963 ncrna:miRNA chromosome:GRCh37:22:38243685:38243781:-1 gene:ENSG00000207696 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384963 ncrna:miRNA chromosome:GRCh37:22:38243685:38243781:-1 gene:ENSG00000207696 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 38243685	 38243781	-	ENSG00000207696	ENST00000384963	NA	NA	EIF3L	NA	chr22:38245379-38253781	inter
LNCA_21_P0003676	0.90924925	A	0.89788496	A	1.00790823174832	0	lncRNA	TCONS_00008321	NA	NA	NA	NA	XLOC_003777	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003777), lincRNA [TCONS_00008321]"	chr4:171977010-171977345	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_00008321	TCONS_00008321	chr4	171977010	171977345	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17741_PI429285431	0.89694643	A	0.90507835	A	0.994379238502189	0	lncRNA	19471-1_{1..370}	lnc-HNRNPAB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HNRNPAB-1:1	chr5	177661972	177662341	+	lnc-HNRNPAB-1	lnc-HNRNPAB-1:1	XLOC_004672	linc-ZNF354B-2	COL23A1	NA	chr5:177664617-177672081	inter
CUST_51029_PI429285431	0.9237024	A	0.92853576	A	0.996655375901475	0	lncRNA	54672-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00007055 range=chr13:19793293-19820881 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007055 range=chr13:19793293-19820881 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 19796293	 19799292	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24740_PI429285431	3.7685435	P	3.4289744	P	1.26537859788824	0	lncRNA	26285-1_{1..566}	lnc-LIN54-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIN54-1:10	chr4	 83821487	 83822052	-	lnc-LIN54-1	lnc-LIN54-1:10	ENSG00000251022.1	RP11-163O17.1	SEC31A	NA	chr4:83811487-83812419	inter
CUST_17452_PI429285431	0.9091992	A	0.9087443	A	1.0003153623687	0	lncRNA	19176-1_{1..1240}	lnc-GNAO1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNAO1-1:2	chr16	 56170559	 56171798	+	lnc-GNAO1-1	lnc-GNAO1-1:2	XLOC_011734	linc-GNAO1-1	NA	NA	NA	inter
CUST_36077_PI429285431	2.4998245	A	2.4792464	A	1.01436586327091	0	lncRNA	37382-2_{3001..5792}	n344666|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_215|NULL|-1.3220900|-0.3608641	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n344666|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_215|NULL|-1.3220900|-0.3608641	chr1	200383797	200386588	+	NA	NA	NA	NA	ZNF281	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10chr1:200375420-200379166"	NA	inter
CUST_10421_PI429285431	0.9222684	A	0.917924	A	1.00301584715551	0	lncRNA	11949-1_{1..748}	lnc-MKLN1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MKLN1-1:2	chr7	130623999	130624746	+	lnc-MKLN1-1	lnc-MKLN1-1:2	XLOC_006252	linc-MKLN1-2	NA	NA	NA	inter
CUST_14055_PI429285431	0.91011244	A	0.9165931	A	0.995518022964646	0	lncRNA	15701-1_{1..395}	lnc-UBE2E3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBE2E3-3:1	chr2	180782080	180782474	+	lnc-UBE2E3-3	lnc-UBE2E3-3:1	XLOC_001772	linc-UBE2E3-3	NA	NA	NA	inter
LNCA_24_P401637	10.208527	P	10.493117	P	0.820974888797056	0	lncRNA	XR_109559	XR_109559	XR_109559	100130856	Hs.634471	LOC100130856	uncharacterized LOC100130856	NA	THC2480253	NA	"PREDICTED: Homo sapiens hypothetical LOC100130856 (LOC100130856), miscRNA [XR_109559]"	chr19:6378537-6378478	hs|19p13.3	Agilent_HUMAN_G3V2	XR_109559	XR_109559	chr19	  6378478	  6378537	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47701_PI429285431	0.92232144	A	0.9234752	A	0.999200594204159	0	lncRNA	51669-1_{1..3000}	"gi|385137084|ref|NR_047622.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 52, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137084|ref|NR_047622.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 52, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047622.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0007552	3.9312353	P	4.0833774	P	0.899913287376056	0	lncRNA	TCONS_00020407	NA	NA	NA	NA	XLOC_009734	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009734), lincRNA [TCONS_00020407]"	chr12:48638149-48638208	hs|12q13.11	Agilent_HUMAN_G3V2	TCONS_00020407	TCONS_00020407	chr12	 48638149	 48638208	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33335_PI429285431	0.8948945	A	0.8924668	A	1.00168417003426	0	lncRNA	34916-1_{1..1627}	n340052|AF090902|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2507|NULL|-1.1442400|-0.3749266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340052|AF090902|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2507|NULL|-1.1442400|-0.3749266	chr4	 54925763	 54927389	+	NA	NA	NA	NA	CHIC2	NA	chr4:54915763-54930815	inner
CUST_36386_PI429285431	1.0512587	A	1.2252759	A	0.886371131698679	0	lncRNA	37604-1_{1..1532}	n344903|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_452|NULL|-1.3098200|-0.4440147	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344903|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_452|NULL|-1.3098200|-0.4440147	chr6	 48056024	 48057555	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10"	NA	inter
CUST_43386_PI429285431	0.89282066	A	0.88838893	A	1.00307656409334	0	lncRNA	48200-1_{1..706}	"gi|387157900|ref|NR_046600.1| Homo sapiens MTOR antisense RNA 1 (MTOR-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|387157900|ref|NR_046600.1| Homo sapiens MTOR antisense RNA 1 (MTOR-AS1), non-coding RNA"	Chr1	 11203955	 11204660	+	100873935	NR_046600.1	NA	NA	NA	"hg19_refFlat_MTOR:range=chr1:11167542-113194665'pad=0,hg19_refFlat_MTOR:range=chr1:11167542-113194665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40"	NA	inter
LNCA_21_P0005192	0.9158952	A	0.90451753	A	1.00791757944433	0	lncRNA	AY927538	NA	AY927538	NA	NA	XLOC_006145	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006145), lincRNA [TCONS_00012882]"	chr7:74048133-74048192	hs|7q11.23	Agilent_HUMAN_G3V2	AY927538	AY927538	chr7	 74048133	 74048192	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1772_PI429285431	0.9046279	A	1.1976832	A	0.816171760839641	0	lncRNA	1758-1_{1..560}	"transcript_id ""ENST00000602749.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602749.1"" | genecode_v17"	chr4	 57262478	 57263037	+	ENSG00000270147.1	ENST00000602749.1	RP11-646I6.6	RP11-646I6.6-001	PPAT	"hg19_refFlat_PPAT:range=chr4:57261518-573016435'pad=0,hg19_refFlat_PPAT:range=chr4:57261518-573016435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40chr4:57259528-57273037"	NA	inner
CUST_31639_PI429285431	3.311643	P	3.754288	P	0.735784403098158	0	lncRNA	33391-1_{1..409}	n338160|AF147358|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|549|NULL|-0.0584710|-0.1644163	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338160|AF147358|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|549|NULL|-0.0584710|-0.1644163	chr22	 44436807	 44437215	-	NA	NA	NA	NA	PARVB	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.81;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr22:44426807-44447216"	NA	inner
CUST_29282_PI429285431	1.7952775	A	2.359096	A	0.676509219234853	0	lncRNA	31033-1_{1..432}	n332392|AM990322|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500206|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500206|1.7925800|-0.2885425	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332392|AM990322|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500206|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500206|1.7925800|-0.2885425	chr1	 67648590	 67649021	+	NA	NA	NA	NA	IL23R	NA	chr1:67638590-67725662	inner
CUST_33962_PI429285431	0.9088415	A	0.9126223	A	0.99738278004748	0	lncRNA	35501-1_{1..1642}	n340770|AX721088|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3233|NULL|-0.9478140|-0.1405385	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340770|AX721088|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3233|NULL|-0.9478140|-0.1405385	chr17	 56408244	 56409885	-	NA	NA	NA	NA	BZRAP1	NA	chr17:56398244-56406152	inter
CUST_42003_PI429285431	0.9032985	A	0.90428585	A	0.999315855265077	0	lncRNA	43846-1_{1..72}	ENST00000579351 ncrna:miRNA chromosome:GRCh37:1:37627164:37627235:1 gene:ENSG00000264698 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579351 ncrna:miRNA chromosome:GRCh37:1:37627164:37627235:1 gene:ENSG00000264698 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 37627164	 37627235	+	ENSG00000264698	ENST00000579351	NA	NA	NA	NA	NA	inter
CUST_29016_PI429285431	0.91601425	A	0.8957802	A	1.01412398889325	0	lncRNA	30742-1_{1..771}	n326502|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029905|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029905|-1.1663200|-0.4376476	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326502|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029905|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029905|-1.1663200|-0.4376476	chr1	101588192	101588962	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008288	1.8872231	A	3.8786006	P	0.251498639360219	0	lncRNA	XR_110247	XR_110247	XR_110247	NA	Hs.131714	LOC100507108	uncharacterized LOC100507108	NA	THC2605763	NA	"PREDICTED: Homo sapiens hypothetical LOC100507108 (LOC100507108), miscRNA [XR_110247]"	chr14:100092015-100092074	hs|14q32.2	Agilent_HUMAN_G3V2	XR_110247	XR_110247	chr14	100092015	100092074	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2599_PI429285431	0.9283485	A	1.4351237	A	0.703793843914329	0	lncRNA	2586-1_{1..1785}	"transcript_id ""ENST00000416104.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416104.1"" | genecode_v17"	chr6	109072857	109074641	+	ENSG00000203801.4	ENST00000416104.1	LINC00222	LINC00222-003	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20"	NA	inter
CUST_9810_PI429285431	0.90433854	A	0.90568674	A	0.999065935481272	0	lncRNA	11326-1_{1..382}	lnc-RLIM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RLIM-1:1	chrX	 73640141	 73640522	-	lnc-RLIM-1	lnc-RLIM-1:1	XLOC_008188	linc-NAP1L2-1	SLC16A2	NA	chrX:73641085-73650357	inter
CUST_28780_PI429285431	0.91561973	A	0.9055136	A	1.00702962816776	0	lncRNA	30487-1_{1..1082}	n326186|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092378|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092378|-0.8714560|-0.1947837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326186|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092378|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092378|-0.8714560|-0.1947837	chr1	230513860	230514941	+	NA	NA	NA	NA	PGBD5	NA	chr1:230503860-230513391	inner
CUST_24804_PI429285431	1.1359053	A	1.7079448	A	0.672665186897665	0	lncRNA	26347-1_{1..458}	lnc-KCMF1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-KCMF1-2:1	chr2	 85414309	 85414766	+	lnc-KCMF1-2	lnc-KCMF1-2:1	ENSG00000231134.1	TCF7L1-IT1	TCF7L1	NA	chr2:85404309-85424376	inner
CUST_36844_PI429285431	4.231587	P	4.3414626	P	0.926667962715835	0	lncRNA	38009-1_{1..1611}	n345317|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_866|NULL|-1.3889400|-0.2006613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345317|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_866|NULL|-1.3889400|-0.2006613	chr15	 89036646	 89038256	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11697_PI429285431	0.908691	A	0.9021622	A	1.00453567448623	0	lncRNA	13275-1_{1..332}	lnc-PRKAA2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRKAA2-1:3	chr1	 56881454	 56881785	+	lnc-PRKAA2-1	lnc-PRKAA2-1:3	XLOC_000214	linc-PRKAA2-1	NA	NA	NA	inter
CUST_9619_PI429285431	4.2203717	P	4.189519	P	1.02161576982686	0	lncRNA	11135-1_{1..214}	lnc-RP11-277P12.7.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-277P12.7.1-3:1	chr12	 10443737	 10443950	-	lnc-RP11-277P12.7.1-3	lnc-RP11-277P12.7.1-3:1	XLOC_010016	linc-OLR1-2	NA	NA	NA	inter
CUST_19804_PI429285431	0.91743803	A	0.92242855	A	0.996546811150599	0	lncRNA	21461-1_{1..730}	lnc-PCBD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PCBD1-1:1	chr10	 72626035	 72626764	-	lnc-PCBD1-1	lnc-PCBD1-1:1	ENSG00000237998.1	RP11-432J9.5	SGPL1	NA	chr10:72616035-72636426	inner
LNCA_21_P0009403	0.92974615	A	0.91689146	A	1.00895000605442	0	lncRNA	TCONS_00026047	NA	NA	NA	NA	XLOC_012419	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012419), lincRNA [TCONS_00026047]"	chr17:20479977-20479918	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_00026047	TCONS_00026047	chr17	 20479918	 20479977	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11305_PI429285431	4.613584	P	4.9410276	P	0.796947393407686	0	lncRNA	12868-1_{1..457}	lnc-AC015987.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AC015987.1-3:2	chr7	135769136	135769592	+	lnc-AC015987.1-3	lnc-AC015987.1-3:2	XLOC_006269	linc-CHRM2-3	NA	NA	NA	inter
CUST_19619_PI429285431	7.4656396	P	7.409957	P	1.03935074774699	0	lncRNA	21275-1_{1..514}	lnc-PANK4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PANK4-1:1	chr1	  2425822	  2426335	-	lnc-PANK4-1	lnc-PANK4-1:1	ENSG00000229393.1	RP3-395M20.3	PLCH2	NA	chr1:2415822-2435918	inner
CUST_2715_PI429285431	5.2495065	P	5.9934144	P	0.597119711759463	0	lncRNA	2700-1_{1..473}	"transcript_id ""ENST00000434596.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434596.1"" | genecode_v17"	chr6	168630412	168630884	+	ENSG00000228361.1	ENST00000434596.1	RP11-503C24.3	RP11-503C24.3-001	NA	NA	NA	inter
CUST_10033_PI429285431	1.2357448	A	1.8386614	A	0.658421522273497	0	lncRNA	11560-1_{1..461}	lnc-TRAF5-6:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRAF5-6:5	chr1	211863288	211863748	+	lnc-TRAF5-6	lnc-TRAF5-6:5	XLOC_000550	linc-DTL-2	NA	NA	NA	inter
CUST_8346_PI429285431	5.80745	P	5.7449455	P	1.04427703969192	0	lncRNA	9926-1_{1..557}	lnc-PAIP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PAIP1-1:2	chr5	 43602880	 43603436	-	lnc-PAIP1-1	lnc-PAIP1-1:2	ENSG00000248092	RP11-159F24.1	NNT	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00chr5:43592880-43613278"	NA	inner
CUST_20033_PI429285431	4.93487	P	4.717346	P	1.16273634728134	0	lncRNA	21685-2_{3001..3626}	lnc-CEMP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CEMP1-1:2	chr16	  2614472	  2615097	-	lnc-CEMP1-1	lnc-CEMP1-1:2	ENSG00000261613.1	RP11-20I23.8	PDPK1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PDPK1:range=chr16:2588114-26476735'pad=0,hg19_refFlat_PDPK1:range=chr16:2588114-26476735'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PDPK1:range=chr16:2588114-26477685'pad=0,hg19_refFlat_PDPK1:range=chr16:2588114-26477685'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30chr16:2601472-2625097"	NA	inner
CUST_42094_PI429285431	6.072073	P	6.3563733	P	0.821139760997681	0	lncRNA	44035-1_{1..112}	ENST00000579379 ncrna:miRNA chromosome:GRCh37:17:73492726:73492837:1 gene:ENSG00000265636 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579379 ncrna:miRNA chromosome:GRCh37:17:73492726:73492837:1 gene:ENSG00000265636 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 73492726	 73492837	+	ENSG00000265636	ENST00000579379	NA	NA	KIAA0195	NA	chr17:73482726-73496533	inner
CUST_1599_PI429285431	4.663851	P	4.767191	P	0.930875414530145	0	lncRNA	1585-1_{1..608}	"transcript_id ""ENST00000433178.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433178.1"" | genecode_v17"	chr3	187513975	187514582	+	ENSG00000224049.1	ENST00000433178.1	RP11-30O15.1	RP11-30O15.1-001	NA	NA	NA	inter
CUST_4077_PI429285431	0.92272854	A	0.9197799	A	1.00204593157021	0	lncRNA	4038-1_{1..461}	"transcript_id ""ENST00000529827.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000529827.1"" | genecode_v17"	chr11	112355068	112355528	+	ENSG00000254968.2	ENST00000529827.1	RP11-65M17.3	RP11-65M17.3-003	NA	NA	NA	inter
LNCA_21_P0014555	0.93098277	A	0.9142715	A	1.0116507166946	0	lncRNA	ENST00000556434	XR_110289	XR_110289	NA	NA	LOC100506446	NA	ENST00000556434	THC2525657	NA	"PREDICTED: Homo sapiens hypothetical LOC100506446 (LOC100506446), miscRNA [XR_110289]"	chr14:50410511-50394519	hs|14q21.3	Agilent_HUMAN_G3V2	ENST00000556434	ENST00000556434	chr14	 50394519	 50410511	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5317_PI429285431	3.3180363	P	3.8280947	P	0.702194012623755	0	lncRNA	5256-1_{1..561}	"transcript_id ""ENST00000553818.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553818.1"" | genecode_v17"	chr15	 94304284	 94304844	-	ENSG00000258754.3	ENST00000553818.1	CTD-3049M7.1	CTD-3049M7.1-002	NA	NA	NA	inter
CUST_7786_PI429285431	0.90858924	A	0.9139817	A	0.99626920831598	0	lncRNA	9410-1_{1..560}	lnc-SOX2-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SOX2-1:13	chr3	181508461	181509020	+	lnc-SOX2-1	lnc-SOX2-1:13	ENSG00000242808	RP11-4B14.2	NA	NA	NA	inter
CUST_21541_PI429285431	1.589336	A	0.91824317	A	1.59227864919666	0	lncRNA	23158-1_{1..364}	lnc-ATP6V1E2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATP6V1E2-3:1	chr2	 46394929	 46395292	-	lnc-ATP6V1E2-3	lnc-ATP6V1E2-3:1	ENSG00000231336.1	AC017006.3	PRKCE	NA	chr2:46384929-46405117	inner
CUST_27616_PI429285431	0.91059875	A	0.9128686	A	0.998427896922933	0	lncRNA	29194-1_{1..428}	n324819|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000193088|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000193088|-1.2952600|-0.2778699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324819|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000193088|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000193088|-1.2952600|-0.2778699	chr21	 32374499	 32374926	-	NA	NA	NA	NA	TIAM1	NA	chr21:32490736-32501996	inner
CUST_33979_PI429285431	5.1156	P	6.449954	P	0.396569601746298	0	lncRNA	35516-1_{1..1074}	n340790|BC033590|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3253|NULL|4.0297200|-0.1205704	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340790|BC033590|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3253|NULL|4.0297200|-0.1205704	chr17	 60703861	 60704934	-	NA	NA	NA	NA	MRC2	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30chr17:60704762-60714878"	NA	inner
CUST_49044_PI429285431	2.5469503	A	3.3857594	P	0.559104902353708	0	lncRNA	52872-1_{1..1824}	hg19_lincRNAsTranscripts_TCONS_l2_00021347 range=chr4:150273111-150736991 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021347 range=chr4:150273111-150736991 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	150273111	150274934	-	NA	NA	NA	NA	LOC285423	NA	chr4:150351084-150736980	inter
CUST_13814_PI429285431	3.136109	P	3.0445356	P	1.06553161541793	0	lncRNA	15457-1_{1..227}	lnc-ZNF238-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF238-2:1	chr1	244141712	244141938	+	lnc-ZNF238-2	lnc-ZNF238-2:1	XLOC_000639	linc-ZNF238	NA	NA	NA	inter
CUST_38000_PI429285431	0.91254884	A	0.9138608	A	0.999091031986925	0	lncRNA	39087-1_{1..3000}	n377575|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029938||-0.8281050|-0.2132583	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377575|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029938||-0.8281050|-0.2132583	chr6	  1108576	  1111575	+	NA	NA	NA	NA	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-65.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30"	NA	inter
CUST_22821_PI429285431	1.6510596	A	1.0352268	A	1.5324423487227	0	lncRNA	24401-1_{1..583}	lnc-SPPL3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPPL3.1-1:1	chr12	121199194	121199776	-	lnc-SPPL3.1-1	lnc-SPPL3.1-1:1	ENSG00000255946.1	RP11-173P15.7	SPPL3	NA	chr12:121200313-121209395	inter
CUST_1073_PI429285431	2.693503	A	2.885971	A	0.875107405033317	0	lncRNA	1062-1_{1..562}	"transcript_id ""ENST00000437330.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437330.1"" | genecode_v17"	chr2	132587374	132587935	-	ENSG00000229203.1	ENST00000437330.1	AC103564.7	AC103564.7-001	NA	NA	NA	inter
CUST_36298_PI429285431	1.2533096	A	0.9017337	A	1.27595362961841	0	lncRNA	37530-1_{1..772}	n344825|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_374|NULL|-1.3248100|-0.2533147	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344825|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_374|NULL|-1.3248100|-0.2533147	chr5	 71663445	 71664216	+	NA	NA	NA	NA	PTCD2	NA	chr5:71653445-71655180	inter
CUST_8101_PI429285431	0.89904344	A	0.90119696	A	0.998508407215666	0	lncRNA	9706-1_{1..2580}	lnc-PSMG4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PSMG4-2:1	chr6	  3459044	  3461623	+	lnc-PSMG4-2	lnc-PSMG4-2:1	ENSG00000247306	ENST00000500936	SLC22A23	"hg19_refFlat_SLC22A23:range=chr6:3273289-34567935'pad=0,hg19_refFlat_SLC22A23:range=chr6:3273289-34567935'pad=0 3'pad=0 strand=- repeatMasking=none,-103.90chr6:3449044-3456793"	NA	inter
CUST_19511_PI429285431	0.9004878	A	0.9020608	A	0.998910273668422	0	lncRNA	21167-1_{1..655}	lnc-MDH1B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-MDH1B-2:1	chr2	207986227	207986881	-	lnc-MDH1B-2	lnc-MDH1B-2:1	ENSG00000237892.1	KLF7-IT1	KLF7	NA	chr2:207976227-207996768	inter
LNCA_21_P0009505	0.92493916	A	0.92294884	A	1.00138053676115	0	lncRNA	TCONS_00026375	NA	NA	NA	NA	XLOC_012726	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012726), lincRNA [TCONS_00026375]"	chr18:74240531-74240590	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026375	TCONS_00026375	chr18	 74240531	 74240590	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43750_PI429285431	0.9052049	A	0.9080918	A	0.99800095416342	0	lncRNA	48489-2_{3001..3454}	"gi|257153369|ref|NR_028395.1| Homo sapiens TSNAX-DISC1 readthrough (TSNAX-DISC1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|257153369|ref|NR_028395.1| Homo sapiens TSNAX-DISC1 readthrough (TSNAX-DISC1), transcript variant 3, non-coding RNA"	Chr1	231667399	231667852	+	100303453	NR_028395.1	NA	NA	NA	NA	NA	inter
CUST_46843_PI429285431	7.07651	P	7.3605027	P	0.821314856573715	0	lncRNA	50980-1_{1..2275}	"gi|387849320|ref|NR_049729.1| Homo sapiens ASB16 antisense RNA 1 (ASB16-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387849320|ref|NR_049729.1| Homo sapiens ASB16 antisense RNA 1 (ASB16-AS1), transcript variant 1, non-coding RNA"	Chr17	 42253341	 42255615	-	339201	NR_049729.1	NA	NA	NA	"hg19_refFlat_ASB16:range=chr17:42248158-422557585'pad=0,hg19_refFlat_ASB16:range=chr17:42248158-422557585'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70"	NA	inter
CUST_4722_PI429285431	1.6661991	A	1.3380493	A	1.25540233726825	0	lncRNA	4668-1_{1..586}	"transcript_id ""ENST00000548109.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548109.1"" | genecode_v17"	chr14	 19812176	 19812761	+	ENSG00000258188.1	ENST00000548109.1	RP11-146E13.4	RP11-146E13.4-001	NA	NA	NA	inter
CUST_9146_PI429285431	14.3043	P	13.234418	P	2.09926165874269	0	lncRNA	10665-1_{1..723}	lnc-SERPINC1-1:19	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SERPINC1-1:19	chr1	173836129	173836851	-	lnc-SERPINC1-1	lnc-SERPINC1-1:19	ENSG00000234741	GAS5	DARS2	NA	chr1:173826129-173827682	inter
CUST_2494_PI429285431	1.2460757	A	1.1217564	A	1.08999332490745	0	lncRNA	2486-1_{1..871}	"transcript_id ""ENST00000420572.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420572.2"" | genecode_v17"	chr6	 22744624	 22745494	-	ENSG00000233358.2	ENST00000420572.2	RP1-209A6.1	RP1-209A6.1-001	NA	NA	NA	inter
CUST_27103_PI429285431	0.9155587	A	1.4316063	A	0.699284968916149	0	lncRNA	28635-1_{1..570}	n324214|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328278|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328278|-1.0467300|-0.2823023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324214|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328278|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328278|-1.0467300|-0.2823023	chr7	 26558039	 26558608	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14414_PI429285431	0.9230957	A	1.3942885	A	0.721367934260878	0	lncRNA	16075-1_{1..202}	lnc-SREK1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SREK1-1:6	chr5	 65866144	 65866345	+	lnc-SREK1-1	lnc-SREK1-1:6	XLOC_004409	linc-MAST4-1	NA	NA	NA	inter
CUST_36819_PI429285431	0.9043337	A	0.8985071	A	1.00404685786651	0	lncRNA	37989-1_{1..3000}	n345297|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_846|NULL|-1.4826700|-0.2689157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345297|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_846|NULL|-1.4826700|-0.2689157	chr15	 82030988	 82033987	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9889_PI429285431	3.729115	P	3.7043688	P	1.01730071205125	0	lncRNA	11413-1_{1..257}	lnc-GRXCR1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRXCR1-4:1	chr4	 43342836	 43343092	+	lnc-GRXCR1-4	lnc-GRXCR1-4:1	XLOC_003526	linc-GUF1-3	NA	NA	NA	inter
CUST_16925_PI429285431	0.91082954	A	0.9090984	A	1.00120065501997	0	lncRNA	18636-1_{1..409}	lnc-BCL11A-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BCL11A-5:1	chr2	 60567301	 60567709	-	lnc-BCL11A-5	lnc-BCL11A-5:1	XLOC_002105	linc-FANCL-1	NA	NA	NA	inter
CUST_29652_PI429285431	6.5027685	P	5.878915	P	1.54098572773935	0	lncRNA	31414-1_{1..1663}	n333266|AK075290|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000082325|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000082325|5.2030900|-0.2237105	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333266|AK075290|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000082325|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000082325|5.2030900|-0.2237105	chr21	 35014789	 35016451	+	NA	NA	NA	NA	ITSN1	NA	chr21:35014784-35157140	inner
CUST_18187_PI429285431	0.992926	A	1.0450768	A	0.96449736368985	0	lncRNA	19923-1_{1..801}	lnc-TNN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNN-1:1	chr1	175127396	175128196	+	lnc-TNN-1	lnc-TNN-1:1	ENSG00000227085	RP5-1141O19.2	KIAA0040	NA	chr1:175126123-175137666	inner
CUST_8358_PI429285431	1.2918131	A	0.919322	A	1.29458626257956	0	lncRNA	9938-1_{1..451}	lnc-PCM1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PCM1-3:2	chr8	 17945509	 17945959	+	lnc-PCM1-3	lnc-PCM1-3:2	ENSG00000245281	CTD-2547L16.1	ASAH1	NA	chr8:17935509-17942507	inter
CUST_1812_PI429285431	1.4373957	A	1.1809059	A	1.19456867847206	0	lncRNA	1799-1_{1..2091}	"transcript_id ""ENST00000504263.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000504263.1"" | genecode_v17"	chr4	 80748625	 80750715	+	ENSG00000251321.1	ENST00000504263.1	GDEP	GDEP-001	NA	NA	NA	inter
CUST_35086_PI429285431	4.96001	P	5.10235	P	0.906048384643916	0	lncRNA	36494-2_{3001..6000}	n342048|D86973|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4529|NULL|34.1658000|-0.1596028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342048|D86973|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4529|NULL|34.1658000|-0.1596028	chr12	120568073	120571072	-	NA	NA	NA	NA	GCN1L1	NA	chr12:120565014-120632513	inner
CUST_8811_PI429285431	1.4717177	A	1.2004383	A	1.20687762743412	0	lncRNA	10352-1_{1..885}	lnc-KIAA0664-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA0664-1:1	chr17	  2576324	  2577208	-	lnc-KIAA0664-1	lnc-KIAA0664-1:1	ENSG00000247061	AC005696.2	PAFAH1B1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20chr17:2566324-2587029"	NA	inner
CUST_3313_PI429285431	0.9024441	A	0.89983714	A	1.00180864059477	0	lncRNA	3292-1_{1..549}	"transcript_id ""ENST00000520146.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520146.1"" | genecode_v17"	chr8	130952102	130952650	+	ENSG00000253720.1	ENST00000520146.1	RP11-473O4.3	RP11-473O4.3-001	FAM49B	NA	chr8:130942102-130952000	inter
CUST_7206_PI429285431	1.1686996	A	0.929609	A	1.18024845959079	0	lncRNA	7620-1_{1..301}	"transcript_id ""ENST00000364663.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000364663.1"" | genecode_v17"	chr4	140606281	140606581	-	ENSG00000201533.1	ENST00000364663.1	RN7SKP237	RN7SKP237-201	MGST2	NA	chr4:140596281-140616581	inner
CUST_24479_PI429285431	1.1302396	A	1.5064833	A	0.770440954504619	0	lncRNA	26031-1_{1..335}	lnc-HMG20A-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMG20A-3:4	chr15	 77940486	 77940820	+	lnc-HMG20A-3	lnc-HMG20A-3:4	ENSG00000259666.1	RP11-307C19.3	LOC253044	NA	chr15:77934106-77941582	inter
CUST_13446_PI429285431	7.4894667	P	7.498654	P	0.993652082609002	0	lncRNA	15084-2_{3001..3245}	lnc-C14orf166-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf166-1:1	chr14	 52541947	 52542191	+	lnc-C14orf166-1	lnc-C14orf166-1:1	XLOC_010829	linc-PTGDR	NID2	NA	chr14:52528947-52535946	inter
CUST_51736_PI429285431	5.261328	P	5.059138	P	1.15044339442729	0	lncRNA	55289-2_{3001..3063}	hg19_lincRNAsTranscripts_TCONS_l2_00012045 range=chr18:29281969-29306687 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012045 range=chr18:29281969-29306687 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 29284969	 29285031	-	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80"	NA	inter
CUST_51350_PI429285431	2.3577461	A	1.5685158	A	1.72815222082529	0	lncRNA	54947-2_{3001..4617}	hg19_lincRNAsTranscripts_TCONS_l2_00008762 range=chr15:78996146-79029199 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008762 range=chr15:78996146-79029199 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 78999146	 79000762	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60"	NA	inter
CUST_41056_PI429285431	1.370253	A	0.97479415	A	1.31536104503196	0	lncRNA	41717-1_{1..547}	n411739|NR_045025|lncRNA|Homosapiens||RefGeneNoncode|NR_045025||-1.0545500|-0.1891524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411739|NR_045025|lncRNA|Homosapiens||RefGeneNoncode|NR_045025||-1.0545500|-0.1891524	chr17	 16342300	 16342846	+	NA	NA	NA	NA	C17orf76	NA	chr17:16345328-16383962	inner
CUST_19565_PI429285431	5.474557	P	4.464112	P	2.01453238780318	0	lncRNA	21221-1_{1..906}	lnc-IDS-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IDS-1:11	chrX	148614417	148615322	-	lnc-IDS-1	lnc-IDS-1:11	ENSG00000241489.2	AF011889.5	CXorf40A	NA	chrX:148622519-148624503	inter
CUST_46888_PI429285431	1.9553949	A	1.3479192	A	1.52359103073241	0	lncRNA	51011-2_{3001..4747}	"gi|300360581|ref|NR_034041.1| Homo sapiens serine/arginine-rich splicing factor 1 (SRSF1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300360581|ref|NR_034041.1| Homo sapiens serine/arginine-rich splicing factor 1 (SRSF1), transcript variant 3, non-coding RNA"	Chr17	 56081280	 56083026	-	6426	NR_034041.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10"	NA	inter
CUST_34807_PI429285431	1.6880722	A	3.2025757	P	0.350016903142081	0	lncRNA	36242-1_{1..2847}	n341713|AK056882|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4185|NULL|-1.1487600|-0.4049333	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341713|AK056882|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4185|NULL|-1.1487600|-0.4049333	chr9	 85594504	 85597350	-	NA	NA	NA	NA	RASEF	NA	chr9:85597315-85607351	inner
CUST_11991_PI429285431	0.91830504	A	0.9252769	A	0.995179132760642	0	lncRNA	13572-1_{1..691}	lnc-HS3ST2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HS3ST2-1:1	chr16	 23030356	 23031046	+	lnc-HS3ST2-1	lnc-HS3ST2-1:1	XLOC_011671	linc-SCNN1G-2	NA	NA	NA	inter
CUST_23184_PI429285431	0.9037897	A	0.8933207	A	1.0072829504503	0	lncRNA	24756-1_{1..632}	lnc-SAP18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP18-1:1	chr13	 21592175	 21592806	+	lnc-SAP18-1	lnc-SAP18-1:1	ENSG00000233851.1	LATS2-AS1	LATS2	NA	chr13:21582175-21602261	inner
CUST_44035_PI429285431	2.7596996	A	3.0058212	A	0.843160040080067	0	lncRNA	48717-1_{1..3000}	"gi|362999020|ref|NR_045623.1| Homo sapiens nucleic acid binding protein 1 (NABP1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|362999020|ref|NR_045623.1| Homo sapiens nucleic acid binding protein 1 (NABP1), transcript variant 4, non-coding RNA"	Chr2	192542862	192545861	+	64859	NR_045623.1	NA	NA	NA	NA	NA	inter
CUST_109_PI429285431	1.9661728	A	1.6854453	A	1.21480731426137	0	lncRNA	101-1_{1..462}	"transcript_id ""ENST00000440163.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440163.1"" | genecode_v17"	chr1	   439365	   439826	+	ENSG00000237094.6	ENST00000440163.1	RP4-669L17.10	RP4-669L17.10-011	NA	NA	NA	inter
LNCA_21_P0010557	10.898513	P	11.487412	P	0.664850097197653	0	lncRNA	TCONS_l2_00000584	NA	NA	NA	NA	XLOC_l2_000417	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000417), lincRNA [TCONS_l2_00000584]"	chr1:149045620-149045679	hs|1q21.2	Agilent_HUMAN_G3V2	TCONS_l2_00000584	TCONS_l2_00000584	chr1	149045620	149045679	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44090_PI429285431	3.4994664	P	3.855826	P	0.781133153993516	0	lncRNA	48757-1_{1..1977}	"gi|223941915|ref|NR_026925.1| Homo sapiens uncharacterized LOC151174 (LOC151174), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223941915|ref|NR_026925.1| Homo sapiens uncharacterized LOC151174 (LOC151174), transcript variant 1, non-coding RNA"	Chr2	239133754	239135730	-	151174	NR_026925.1	NA	NA	NA	NA	NA	inter
CUST_43006_PI429285431	0.91557616	A	0.89956033	A	1.01116317579847	0	lncRNA	46176-1_{1..119}	ENST00000391278 ncrna:snoRNA chromosome:GRCh37:2:50116006:50116124:-1 gene:ENSG00000212580 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391278 ncrna:snoRNA chromosome:GRCh37:2:50116006:50116124:-1 gene:ENSG00000212580 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 50116006	 50116124	-	ENSG00000212580	ENST00000391278	NA	NA	NRXN1	NA	chr2:50106006-50126124	inter
CUST_43138_PI429285431	5.1927013	P	3.629394	P	2.95530555241155	0	lncRNA	47952-1_{1..1218}	ENST00000577073 havana:lincRNA chromosome:GRCh37:HSCHR5_1_CTG1:69475596:69477340:-1 gene:ENSG00000262360 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>ENST00000577073 havana:lincRNA chromosome:GRCh37:HSCHR5_1_CTG1:69475596:69477340:-1 gene:ENSG00000262360 gene_biotype:lincRNA transcript_biotype:lincRNA	chrHSCHR5_1_CTG1	 69475596	 69476813	-	ENSG00000262360	ENST00000577073	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90"	NA	Unknown
CUST_27903_PI429285431	3.1473227	P	3.5344734	P	0.764638262736437	0	lncRNA	29498-1_{1..1861}	n325141|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331804|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331804|0.1927490|-0.2375548	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325141|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331804|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331804|0.1927490|-0.2375548	chr2	131876943	131878803	+	NA	NA	NA	NA	PLEKHB2	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70chr2:131866943-131893092"	NA	inner
CUST_46233_PI429285431	0.90946215	A	1.0180745	A	0.927479725372162	0	lncRNA	50472-1_{1..493}	"gi|310123050|ref|XR_110127.1| PREDICTED: Homo sapiens uncharacterized LOC647264 (LOC647264), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|310123050|ref|XR_110127.1| PREDICTED: Homo sapiens uncharacterized LOC647264 (LOC647264), misc_RNA"	Chr13	 64320880	 64321372	+	647264	XR_110127.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0006349	0.91045064	A	0.8991492	A	1.00786432388785	0	lncRNA	TCONS_00016579	NA	NA	NA	NA	XLOC_007354	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007354), lincRNA [TCONS_00016579]"	chr9:38965035-38995831	hs|9p13.1	Agilent_HUMAN_G3V2	TCONS_00016579	TCONS_00016579	chr9	 38965035	 38995831	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10510_PI429285431	1.4291996	A	1.4759103	A	0.968141146333662	0	lncRNA	12036-1_{1..306}	lnc-NCOA3-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCOA3-9:2	chr20	 46691399	 46691704	+	lnc-NCOA3-9	lnc-NCOA3-9:2	XLOC_013547	linc-ARFGEF2-8	NA	NA	NA	inter
CUST_14010_PI429285431	0.8986193	A	0.8952536	A	1.00233564885363	0	lncRNA	15657-1_{1..571}	lnc-GPC5-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPC5-3:3	chr13	 91150464	 91151034	+	lnc-GPC5-3	lnc-GPC5-3:3	XLOC_010469	linc-GPC5-2	NA	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20"	NA	inter
CUST_501_PI429285431	0.8985909	A	1.8415772	A	0.520155072690643	0	lncRNA	493-1_{1..1145}	"transcript_id ""ENST00000428646.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428646.1"" | genecode_v17"	chr1	182055686	182056830	+	ENSG00000225982.1	ENST00000428646.1	RP11-538D16.3	RP11-538D16.3-001	NA	NA	NA	inter
CUST_22667_PI429285431	1.5840313	A	1.075161	M	1.42293553188754	0	lncRNA	24251-1_{1..1306}	lnc-DMRTA1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DMRTA1-3:1	chr9	 23721473	 23722778	+	lnc-DMRTA1-3	lnc-DMRTA1-3:1	ENSG00000230810.1	RP11-315I14.3	ELAVL2	NA	chr9:23711473-23731789	inner
CUST_8334_PI429285431	6.2939687	P	6.4346566	P	0.907086538860461	0	lncRNA	9916-1_{1..2459}	lnc-ACOT9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACOT9-2:1	chrX	 23094787	 23097245	-	lnc-ACOT9-2	lnc-ACOT9-2:1	ENSG00000249566	AC117517.1	NA	"hg19_refFlat_FAM3C:range=chr7:120990515-1210230235'pad=0,hg19_refFlat_FAM3C:range=chr7:120990515-1210230235'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40"	NA	inter
CUST_19499_PI429285431	5.58855	P	5.698455	P	0.926649078780049	0	lncRNA	21155-1_{1..394}	lnc-DIO2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DIO2-2:1	chr14	 80257549	 80257942	-	lnc-DIO2-2	lnc-DIO2-2:1	ENSG00000258637.1	RP11-242P2.1	NRXN3	NA	chr14:80247549-80267606	inner
CUST_19522_PI429285431	6.6853786	P	7.0720663	P	0.764883695291626	0	lncRNA	21178-1_{1..461}	lnc-C6orf221-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C6orf221-1:1	chr6	 74080550	 74081010	+	lnc-C6orf221-1	lnc-C6orf221-1:1	ENSG00000231332.1	OOEP-AS1	OOEP	"hg19_refFlat_OOEP:range=chr6:74078507-740795155'pad=0,hg19_refFlat_OOEP:range=chr6:74078507-740795155'pad=0 3'pad=0 strand=- repeatMasking=none,-97.60chr6:74078278-74079515"	NA	inter
CUST_37733_PI429285431	3.3801706	P	3.8043315	P	0.745272070521888	0	lncRNA	38827-2_{3001..6000}	n346235|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1785|NULL|-1.5752300|-0.3287695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346235|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1785|NULL|-1.5752300|-0.3287695	chr10	  4792747	  4795746	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70"	NA	inter
CUST_39918_PI429285431	0.8957975	A	0.8920908	A	1.00257259210484	0	lncRNA	40796-3_{6001..7119}	n406668|NR_024207|lncRNA|Homosapiens||RefGeneNoncode|NR_024207||13.0783000|-0.0860457	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406668|NR_024207|lncRNA|Homosapiens||RefGeneNoncode|NR_024207||13.0783000|-0.0860457	chr8	145168628	145169746	+	NA	NA	NA	NA	MAF1	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80chr8:145159305-145162515"	NA	inter
CUST_42707_PI429285431	0.9175388	A	1.4600971	A	0.686552380465197	0	lncRNA	45637-1_{1..103}	ENST00000516395 ncrna:snoRNA chromosome:GRCh37:12:31964022:31964124:1 gene:ENSG00000252204 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516395 ncrna:snoRNA chromosome:GRCh37:12:31964022:31964124:1 gene:ENSG00000252204 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 31964022	 31964124	+	ENSG00000252204	ENST00000516395	NA	NA	NA	NA	NA	inter
CUST_706_PI429285431	1.040016	A	0.9024857	A	1.10002041605992	0	lncRNA	699-1_{1..615}	"transcript_id ""ENST00000585789.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585789.1"" | genecode_v17"	chr2	  6775584	  6776198	-	ENSG00000236172.2	ENST00000585789.1	AC097517.2	AC097517.2-051	NA	NA	NA	inter
CUST_33907_PI429285431	3.4033296	P	2.1209874	A	2.43233543566723	0	lncRNA	35449-1_{1..1855}	n340699|AK129889|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3162|NULL|-1.1776400|-0.3504215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340699|AK129889|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3162|NULL|-1.1776400|-0.3504215	chr5	156187490	156189344	+	NA	NA	NA	NA	SGCD	NA	chr5:156177490-156194799	inner
LNCA_33_P3390591	0.9187479	A	0.9071687	A	1.00805838523626	0	lncRNA	XR_109813	XR_109813	XR_109813	100506272	NA	LOC100506272	uncharacterized LOC100506272	ENST00000514767	THC2664322	NA	"PREDICTED: Homo sapiens hypothetical LOC100506272 (LOC100506272), miscRNA [XR_109813]"	chr4:188454177-188454118	hs|4q35.2	Agilent_HUMAN_G3V2	XR_109813	XR_109813	chr4	188454118	188454177	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007985	3.2216632	P	3.4560978	P	0.850018060551635	0	lncRNA	ENST00000420694	NA	NA	NA	NA	XLOC_010557	NA	ENST00000420694	THC2691198	NA	"BROAD Institute lincRNA (XLOC_010557), lincRNA [TCONS_00021627]"	chr13:30993794-30993735	hs|13q12.3	Agilent_HUMAN_G3V2	ENST00000420694	ENST00000420694	chr13	 30993735	 30993794	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22500_PI429285431	0.91822195	A	0.9093748	A	1.00615121859755	0	lncRNA	24087-1_{1..343}	lnc-C1orf177-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf177-1:1	chr1	 55260411	 55260753	+	lnc-C1orf177-1	lnc-C1orf177-1:1	ENSG00000237453.1	RP11-67L3.2	TTC22	NA	chr1:55250411-55266941	inner
CUST_35785_PI429285431	8.343211	P	8.46416	P	0.919582553285842	0	lncRNA	37197-1_{1..814}	n344467|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_15|NULL|-1.2809500|-0.2019644	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344467|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_15|NULL|-1.2809500|-0.2019644	chrX	 53123444	 53124257	+	NA	NA	NA	NA	TSPYL2	NA	chrX:53113444-53117728	inter
CUST_47887_PI429285431	4.351593	P	4.429143	P	0.947665616791721	0	lncRNA	51782-1_{1..1712}	"gi|410171697|ref|XR_171338.1| PREDICTED: Homo sapiens family with sequence similarity 201, member B (FAM201B), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171697|ref|XR_171338.1| PREDICTED: Homo sapiens family with sequence similarity 201, member B (FAM201B), misc_RNA"	NA	NA	NA	NA	NA	XR_171338.1	NA	NA	NA	NA	NA	Unknown
CUST_42347_PI429285431	10.3642025	P	10.045294	P	1.24738645645511	0	lncRNA	45007-1_{1..91}	ENST00000410433 ncrna:snoRNA chromosome:GRCh37:20:47896856:47896946:1 gene:ENSG00000222365 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410433 ncrna:snoRNA chromosome:GRCh37:20:47896856:47896946:1 gene:ENSG00000222365 gene_biotype:snoRNA transcript_biotype:snoRNA	chr20	 47896856	 47896946	+	ENSG00000222365	ENST00000410433	NA	NA	ZNFX1	NA	chr20:47886856-47894756	inter
CUST_45483_PI429285431	0.9233066	A	0.9115621	A	1.00817389238978	0	lncRNA	49898-1_{1..3000}	"gi|336455082|ref|NR_038884.1| Homo sapiens uncharacterized LOC399708 (LOC399708), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|336455082|ref|NR_038884.1| Homo sapiens uncharacterized LOC399708 (LOC399708), non-coding RNA"	Chr10	  2342513	  2345512	-	399708	NR_038884.1	NA	NA	NA	NA	NA	inter
CUST_45225_PI429285431	1.3698267	A	0.9015962	A	1.38341163962079	0	lncRNA	49683-1_{1..3000}	"gi|375493488|ref|NR_046346.1| Homo sapiens ganglioside induced differentiation associated protein 1 (GDAP1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375493488|ref|NR_046346.1| Homo sapiens ganglioside induced differentiation associated protein 1 (GDAP1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_046346.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009474	2.867334	A	1.8810767	A	1.98103902427225	0	lncRNA	TCONS_00026326	NA	NA	NA	NA	XLOC_012666	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012666), lincRNA [TCONS_00026326]"	chr18:42238731-42238790	hs|18q12.3	Agilent_HUMAN_G3V2	TCONS_00026326	TCONS_00026326	chr18	 42238731	 42238790	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20897_PI429285431	8.233193	P	8.650688	P	0.748723530212087	0	lncRNA	22528-1_{1..672}	lnc-TRMT112-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRMT112-1:1	chr11	 64096640	 64097311	-	lnc-TRMT112-1	lnc-TRMT112-1:1	ENSG00000236935.1	AP003774.1	PRDX5	NA	chr11:64086640-64089295	inter
CUST_1939_PI429285431	0.9012384	A	0.906795	A	0.996155866049567	0	lncRNA	1931-1_{1..561}	"transcript_id ""ENST00000502345.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502345.1"" | genecode_v17"	chr4	150654493	150655053	-	ENSG00000234828.3	ENST00000502345.1	RP11-526A4.1	RP11-526A4.1-005	LOC285423	NA	chr4:150644493-150736980	inter
CUST_33205_PI429285431	4.655418	P	3.9189746	P	1.66606351347445	0	lncRNA	34796-1_{1..1680}	n339901|BC071787|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2350|NULL|-0.9533570|-0.2996915	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339901|BC071787|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2350|NULL|-0.9533570|-0.2996915	chr18	 59475299	 59476978	-	NA	NA	NA	NA	RNF152	NA	chr18:59482304-59486953	inter
CUST_29000_PI429285431	2.1078112	A	2.4150355	A	0.808195206574568	0	lncRNA	30724-1_{1..748}	n326484|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098110|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098110|-0.9978680|-0.3266184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326484|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098110|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098110|-0.9978680|-0.3266184	chr1	110552978	110553725	-	NA	NA	NA	NA	AHCYL1	"hg19_refFlat_AHCYL1:range=chr1:110551677-1105643025'pad=0,hg19_refFlat_AHCYL1:range=chr1:110551677-1105643025'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_AHCYL1:range=chr1:110527675-1105643025'pad=0,hg19_refFlat_AHCYL1:range=chr1:110527675-1105643025'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20chr1:110542978-110564132"	NA	inner
CUST_45057_PI429285431	3.1180038	A	3.4100544	P	0.816740344871542	0	lncRNA	49548-2_{3001..4006}	"gi|110671312|ref|NR_003103.1| Homo sapiens protection of telomeres 1 homolog (S. pombe) (POT1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|110671312|ref|NR_003103.1| Homo sapiens protection of telomeres 1 homolog (S. pombe) (POT1), transcript variant 3, non-coding RNA"	Chr7	124465440	124466445	-	25913	NR_003103.1	NA	NA	NA	NA	NA	inter
CUST_11426_PI429285431	1.4763123	A	0.9010996	A	1.48989710604506	0	lncRNA	12994-1_{1..466}	lnc-POLR2B-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLR2B-1:11	chr4	 58069674	 58070139	+	lnc-POLR2B-1	lnc-POLR2B-1:11	XLOC_003547	linc-LPHN3-8	NA	NA	NA	inter
CUST_46635_PI429285431	1.2306309	A	1.4725251	A	0.845634299671092	0	lncRNA	50810-1_{1..2094}	"gi|410170843|ref|XR_110135.3| PREDICTED: Homo sapiens uncharacterized protein MGC34800 (MGC34800), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170843|ref|XR_110135.3| PREDICTED: Homo sapiens uncharacterized protein MGC34800 (MGC34800), misc_RNA"	Chr16	 34256378	 34258471	+	162137	XR_110135.4	NA	NA	NA	NA	NA	inter
CUST_18249_PI429285431	3.2255883	P	3.29337	P	0.954103908932596	0	lncRNA	19983-1_{1..1254}	lnc-EIF3M-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EIF3M-2:4	chr11	 32480185	 32481438	+	lnc-EIF3M-2	lnc-EIF3M-2:4	ENSG00000183242	WT1-AS	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90"	NA	inter
CUST_51_PI429285431	2.0490108	A	1.7645924	A	1.21791917957743	0	lncRNA	50-1_{1..1269}	"transcript_id ""ENST00000552584.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552584.1"" | genecode_v17"	chr12	 93568142	 93569410	+	ENSG00000258171.1	ENST00000552584.1	RP11-511B23.3	RP11-511B23.3-001	NA	NA	NA	inter
LNCA_33_P3414107	2.764157	A	3.3464887	P	0.667883463832155	0	lncRNA	XR_108595	XR_108595	XR_108595	   729040	Hs.678658	LOC729040	uncharacterized LOC729040	ENST00000440769	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC729040 (LOC729040), miscRNA [XR_108595]"	chr5:90575973-90575914	hs|5q14.3	Agilent_HUMAN_G3V2	XR_108595	XR_108595	chr5	 90575914	 90575973	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36119_PI429285431	9.2346735	P	9.130222	P	1.0750855746428	0	lncRNA	37409-1_{1..2783}	n344694|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_243|NULL|-1.4179000|-0.3558505	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344694|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_243|NULL|-1.4179000|-0.3558505	chr6	114730052	114732834	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16314_PI429285431	2.7970567	A	3.7793655	P	0.506169049707585	0	lncRNA	18020-1_{1..614}	lnc-TBX3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBX3-4:1	chr12	115758639	115759252	-	lnc-TBX3-4	lnc-TBX3-4:1	XLOC_010208	linc-TBX3-5	NA	NA	NA	inter
LNCA_33_P3291614	0.93253714	A	0.9169449	A	1.01086633154221	0	lncRNA	XR_110031	XR_110031	XR_110031	100133039	Hs.667544	LOC100133039	uncharacterized LOC100133039	NA	THC2482597	NA	"PREDICTED: Homo sapiens hypothetical LOC100133039 (LOC100133039), miscRNA [XR_110031]"	chr3:11605180-11605121	hs|3p25.3	Agilent_HUMAN_G3V2	XR_110031	XR_110031	chr3	 11605121	 11605180	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9329_PI429285431	0.977533	A	0.9658946	A	1.00809975106836	0	lncRNA	10838-1_{1..3000}	lnc-SLC12A8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC12A8-1:1	chr3	124798078	124801077	-	lnc-SLC12A8-1	lnc-SLC12A8-1:1	XLOC_003228	linc-HEG1	SLC12A8	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40chr3:124801480-124808378"	NA	inter
CUST_45855_PI429285431	1.303768	A	2.4144368	A	0.463079308339001	0	lncRNA	50185-1_{1..2061}	"gi|341915550|ref|XR_110891.2| PREDICTED: Homo sapiens ARAP1 antisense RNA 2 (ARAP1-AS2), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|341915550|ref|XR_110891.2| PREDICTED: Homo sapiens ARAP1 antisense RNA 2 (ARAP1-AS2), misc_RNA"	NA	NA	NA	NA	NA	XR_110891.2	NA	NA	NA	"hg19_refFlat_ARAP1:range=chr11:72396709-724381735'pad=0,hg19_refFlat_ARAP1:range=chr11:72396709-724381735'pad=0 3'pad=0 strand=- repeatMasking=none,-104.70;hg19_refFlat_ARAP1:range=chr11:72396709-724242325'pad=0,hg19_refFlat_ARAP1:range=chr11:72396709-724242325'pad=0 3'pad=0 strand=- repeatMasking=none,-59.50"	NA	Unknown
CUST_3820_PI429285431	0.91702694	A	0.90018165	A	1.01174469894508	0	lncRNA	3788-1_{1..416}	"transcript_id ""ENST00000415509.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415509.1"" | genecode_v17"	chr10	125185229	125185644	-	ENSG00000225152.1	ENST00000415509.1	RP11-338O1.2	RP11-338O1.2-001	NA	NA	NA	inter
CUST_28661_PI429285431	1.1457396	A	1.530146	A	0.766094144804471	0	lncRNA	30353-1_{1..1220}	n326040|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047272|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047272|0.2264460|-0.4497328	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326040|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047272|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047272|0.2264460|-0.4497328	chr10	 26976920	 26978139	+	NA	NA	NA	NA	PDSS1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00chr10:26986595-26992381"	NA	inter
CUST_33618_PI429285431	1.2816083	A	0.89914995	A	1.30356123021263	0	lncRNA	35183-1_{1..378}	n340377|AF056422|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2838|NULL|-1.2581500|-0.4745378	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340377|AF056422|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2838|NULL|-1.2581500|-0.4745378	chr5	 10396729	 10397106	+	NA	NA	NA	NA	6-Mar	NA	chr5:10386729-10407107	inner
LNCA_21_P0002286	0.93058676	A	0.91379195	A	1.01170929854691	0	lncRNA	TCONS_00003846	NA	NA	NA	NA	XLOC_001651	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001651), lincRNA [TCONS_00003846]"	chr2:123505947-123506006	hs|2q14.3	Agilent_HUMAN_G3V2	TCONS_00003846	TCONS_00003846	chr2	123505947	123506006	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2330_PI429285431	0.8916022	A	0.8918084	A	0.999857083264938	0	lncRNA	2322-1_{1..497}	"transcript_id ""ENST00000515364.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515364.1"" | genecode_v17"	chr5	118096169	118096665	-	ENSG00000249426.1	ENST00000515364.1	CTC-448D22.1	CTC-448D22.1-001	NA	NA	NA	inter
CUST_16768_PI429285431	0.9042162	A	0.9060913	A	0.998701123992321	0	lncRNA	18476-1_{1..902}	lnc-C15orf2-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-2:7	chr15	 24758127	 24759028	+	lnc-C15orf2-2	lnc-C15orf2-2:7	XLOC_011181	linc-C15orf2-1	NA	NA	NA	inter
CUST_5054_PI429285431	7.185416	P	7.1886716	P	0.997745934269089	0	lncRNA	4994-1_{1..1603}	"transcript_id ""ENST00000559946.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559946.1"" | genecode_v17"	chr14	103011591	103013193	+	ENSG00000259230.1	ENST00000559946.1	CTD-2555C10.3	CTD-2555C10.3-001	NA	NA	NA	inter
LNCA_21_P0003530	1.3384454	A	2.2137566	A	0.545136263721703	0	lncRNA	ENST00000513718	NA	NA	NA	NA	XLOC_004140	NA	ENST00000513718	NA	NA	"BROAD Institute lincRNA (XLOC_004140), lincRNA [TCONS_00007890]"	chr4:160666938-160666879	hs|4q32.1	Agilent_HUMAN_G3V2	ENST00000513718	ENST00000513718	chr4	160666879	160666938	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49036_PI429285431	0.9307591	A	2.0051837	A	0.474860414561885	0	lncRNA	52865-1_{1..478}	hg19_lincRNAsTranscripts_TCONS_l2_00020666 range=chr4:105475276-105541543 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020666 range=chr4:105475276-105541543 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	105475276	105475753	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51426_PI429285431	6.062421	P	6.0906267	P	0.980639174119065	0	lncRNA	55005-1_{1..394}	hg19_lincRNAsTranscripts_TCONS_l2_00010020 range=chr16:14914651-14915183 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010020 range=chr16:14914651-14915183 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 14914651	 14915044	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_299_PI429201921	1.2692978	A	1.2306309	A	1.0271642527908	0	lncRNA	207-1_{1..3000}	TC16001780.hg.1	TCONS_00024264-XLOC_011882 // Rinn lincRNAs // linc-CPPED1-4 chr16:-:14456965-14464123 // chr16 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr16:-:14456965-14464123	NA	Affy_HUMAN_HTA2.0	TCONS_00024264-XLOC_011882	linc-CPPED1-4	chr16	 14456965	 14464123	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10857_PI429285431	0.9009391	A	0.91007507	A	0.993687436628604	0	lncRNA	12395-1_{1..3000}	lnc-PTPRE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPRE-1:1	chr10	130115187	130118186	+	lnc-PTPRE-1	lnc-PTPRE-1:1	XLOC_008662	linc-MGMT-4	NA	NA	NA	inter
CUST_29412_PI429285431	4.9081163	P	5.030809	P	0.918471779747598	0	lncRNA	31166-1_{1..332}	n332777|AF042831|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063704|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063704|2.4982300|0.0012662	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332777|AF042831|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063704|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063704|2.4982300|0.0012662	chr20	 30432989	 30433320	-	NA	NA	NA	NA	FOXS1	NA	chr20:30432103-30433420	inner
CUST_23470_PI429285431	0.8936988	A	1.4555264	A	0.677443437430651	0	lncRNA	25037-1_{1..434}	lnc-SOCS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SOCS2-1:1	chr12	 94209643	 94210076	+	lnc-SOCS2-1	lnc-SOCS2-1:1	ENSG00000257196.1	RP11-850P15.1	CRADD	NA	chr12:94199643-94219885	inner
CUST_44854_PI429285431	0.91007507	A	0.90927505	A	1.00055468538847	0	lncRNA	49380-2_{3001..4522}	"gi|310119878|ref|XR_110199.1| PREDICTED: Homo sapiens uncharacterized LOC401286 (LOC401286), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|310119878|ref|XR_110199.1| PREDICTED: Homo sapiens uncharacterized LOC401286 (LOC401286), misc_RNA"	Chr6	168070520	168072041	-	401286	XR_110199.2	NA	NA	NA	NA	NA	inter
CUST_47703_PI429285431	1.2958335	A	0.9061718	A	1.31008616351704	0	lncRNA	51670-1_{1..3000}	"gi|385137067|ref|NR_047605.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 35, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137067|ref|NR_047605.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 35, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047605.1	NA	NA	NA	NA	NA	inter
CUST_29107_PI429285431	0.9215678	A	0.9194099	A	1.00149686148138	0	lncRNA	30840-1_{1..731}	n326605|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000022251|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000022251|-1.1806600|-0.4414931	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326605|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000022251|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000022251|-1.1806600|-0.4414931	chr1	 56383980	 56384710	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011193	0.92485106	A	0.92310935	A	1.00120799040922	0	lncRNA	TCONS_l2_00007305	NA	NA	NA	NA	XLOC_l2_004084	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004084), lincRNA [TCONS_l2_00007305]"	chr13:101591559-101591500	hs|13q32.3	Agilent_HUMAN_G3V2	TCONS_l2_00007305	TCONS_l2_00007305	chr13	101591500	101591559	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3725_PI429285431	0.92500097	A	0.93076676	A	0.996011434459712	0	lncRNA	3694-1_{1..524}	"transcript_id ""ENST00000427247.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427247.1"" | genecode_v17"	chr10	 71754382	 71754905	-	ENSG00000224222.1	ENST00000427247.1	RP11-262I2.2	RP11-262I2.2-001	NA	NA	NA	inter
CUST_45169_PI429285431	1.6492262	A	1.0274379	A	1.53878140395158	0	lncRNA	49644-1_{1..2808}	"gi|387912536|ref|NR_049736.1| Homo sapiens ash2 (absent, small, or homeotic)-like (Drosophila) (ASH2L), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387912536|ref|NR_049736.1| Homo sapiens ash2 (absent, small, or homeotic)-like (Drosophila) (ASH2L), transcript variant 4, non-coding RNA"	Chr8	 37963011	 37965818	+	9070	NR_049736.1	NA	NA	NA	NA	NA	inter
CUST_16118_PI429285431	2.255046	A	2.4766536	A	0.857609266876834	0	lncRNA	17824-1_{1..251}	lnc-LRP5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRP5-1:3	chr11	 68041829	 68042079	+	lnc-LRP5-1	lnc-LRP5-1:3	XLOC_009185	linc-LRP5-1	C11orf24	NA	chr11:68031829-68039469	inter
LNCA_21_P0003171	0.9242964	A	0.9197105	A	1.00318376109107	0	lncRNA	TCONS_00006651	NA	NA	NA	NA	XLOC_003242	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003242), lincRNA [TCONS_00006651]"	chr3:127403991-127400797	hs|3q21.3	Agilent_HUMAN_G3V2	TCONS_00006651	TCONS_00006651	chr3	127400797	127403991	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42102_PI429285431	7.343482	P	7.2368097	P	1.07674177262427	0	lncRNA	44055-1_{1..83}	ENST00000408214 ncrna:miRNA chromosome:GRCh37:15:62535565:62535647:-1 gene:ENSG00000221141 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408214 ncrna:miRNA chromosome:GRCh37:15:62535565:62535647:-1 gene:ENSG00000221141 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 62535565	 62535647	-	ENSG00000221141	ENST00000408214	NA	NA	NA	NA	NA	inter
CUST_25123_PI429285431	10.872055	P	12.213709	P	0.394568037907938	0	lncRNA	26661-1_{1..512}	lnc-KRT80-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KRT80-2:1	chr12	 52497943	 52498454	-	lnc-KRT80-2	lnc-KRT80-2:1	ENSG00000257989.1	RP1-288H2.2	NA	NA	NA	inter
CUST_30934_PI429285431	3.1755333	A	3.9637642	P	0.579053719473912	0	lncRNA	32722-1_{1..303}	n337002|DQ004398|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000340910|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000340910|0.6826100|-0.0847450	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337002|DQ004398|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000340910|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000340910|0.6826100|-0.0847450	chr2	121549985	121550287	+	NA	NA	NA	NA	GLI2	NA	chr2:121554867-121695034	inner
CUST_16000_PI429285431	0.920912	A	1.2349576	A	0.804382945996946	0	lncRNA	17697-1_{1..714}	lnc-TTC27-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC27-1:2	chr2	 33066080	 33066793	+	lnc-TTC27-1	lnc-TTC27-1:2	XLOC_001418	linc-LTBP1	NA	NA	NA	inter
CUST_23760_PI429285431	0.90298223	A	0.9030278	A	0.999968413781837	0	lncRNA	25323-1_{1..345}	lnc-C4orf21-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C4orf21-2:2	chr4	113614604	113614948	-	lnc-C4orf21-2	lnc-C4orf21-2:2	ENSG00000250046.2	RP11-148B6.2	NA	NA	NA	inter
CUST_16110_PI429285431	0.9155642	A	0.9163841	A	0.99943185008498	0	lncRNA	17816-1_{1..1146}	lnc-C5orf49-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-C5orf49-2:1	chr5	  7372986	  7374131	-	lnc-C5orf49-2	lnc-C5orf49-2:1	XLOC_004727	linc-NSUN2-1	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50"	NA	inter
CUST_39474_PI429285431	11.186097	P	10.868827	P	1.2459705768187	0	lncRNA	40419-1_{1..2931}	n387047|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wzb.1||0.2717870|-0.2219866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387047|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wzb.1||0.2717870|-0.2219866	chr18	  3594445	  3597375	+	NA	NA	NA	NA	DLGAP1	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60chr18:3584445-3607376"	NA	inner
LNCA_21_P0011461	3.0913444	P	2.2805858	A	1.75413356123067	0	lncRNA	TCONS_l2_00010087	NA	NA	NA	NA	XLOC_l2_005438	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005438), lincRNA [TCONS_l2_00010087]"	chr16:30291769-30291062	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00010087	TCONS_l2_00010087	chr16	 30291062	 30291769	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25645_PI429285431	3.8545768	P	3.8878984	P	0.977167915637174	0	lncRNA	27175-1_{1..3000}	lnc-ZBED4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZBED4-2:1	chr22	 49946300	 49949299	+	lnc-ZBED4-2	lnc-ZBED4-2:1	ENSG00000212939.2	RP1-29C18.10	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90"	NA	inter
CUST_50348_PI429285431	3.952561	P	4.2600827	P	0.80802862079208	0	lncRNA	54062-1_{1..965}	hg19_lincRNAsTranscripts_TCONS_l2_00029116 range=chr9:138507098-138511218 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029116 range=chr9:138507098-138511218 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	138507098	138508062	+	NA	NA	NA	NA	GLT6D1	NA	chr9:138497098-138521218	inter
CUST_42306_PI429285431	7.443392	P	8.317815	P	0.545471982007899	0	lncRNA	44930-1_{1..137}	ENST00000384583 ncrna:snoRNA chromosome:GRCh37:12:49061240:49061376:-1 gene:ENSG00000207313 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384583 ncrna:snoRNA chromosome:GRCh37:12:49061240:49061376:-1 gene:ENSG00000207313 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 49061240	 49061376	-	ENSG00000207313	ENST00000384583	NA	NA	C12orf41	NA	chr12:49051240-49071376	inner
CUST_23329_PI429285431	4.3533363	P	3.8354597	P	1.43184626390643	0	lncRNA	24900-1_{1..549}	lnc-NFATC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NFATC3-1:1	chr16	 68155890	 68156438	+	lnc-NFATC3-1	lnc-NFATC3-1:1	ENSG00000261864.1	RP11-67A1.2	NFATC3	NA	chr16:68145890-68166174	inner
CUST_42904_PI429285431	0.90872025	A	1.1133468	A	0.867763283653412	0	lncRNA	46001-1_{1..70}	ENST00000364796 ncrna:snoRNA chromosome:GRCh37:X:28942186:28942255:1 gene:ENSG00000201666 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364796 ncrna:snoRNA chromosome:GRCh37:X:28942186:28942255:1 gene:ENSG00000201666 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	 28942186	 28942255	+	ENSG00000201666	ENST00000364796	NA	NA	IL1RAPL1	NA	chrX:28932186-28952255	inner
CUST_27715_PI429285431	4.170045	P	3.2880104	P	1.84297257168036	0	lncRNA	29295-1_{1..593}	n324927|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000268118|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000268118|-0.9255380|-0.1428393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324927|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000268118|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000268118|-0.9255380|-0.1428393	chr20	 57360644	 57361236	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39177_PI429285431	7.2735877	P	7.490712	P	0.860278507375323	0	lncRNA	40152-1_{1..1189}	n385916|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vix.2||6.9300600|-0.0822453	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385916|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vix.2||6.9300600|-0.0822453	chr1	    15602	    16790	-	NA	NA	NA	NA	LOC100652771	NA	chr1:12190-13639	inter
CUST_40601_PI429285431	2.5307782	A	2.7448783	A	0.862083728096806	0	lncRNA	41347-1_{1..672}	n410080|NR_036519|lncRNA|Homosapiens||RefGeneNoncode|NR_036519||-0.0182579|-0.2024806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410080|NR_036519|lncRNA|Homosapiens||RefGeneNoncode|NR_036519||-0.0182579|-0.2024806	chr17	 80407590	 80408261	-	NA	NA	NA	NA	NARF	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30chr17:80416060-80418707"	NA	inter
CUST_47294_PI429285431	0.90725577	A	0.91089606	A	0.997479923986558	0	lncRNA	51362-1_{1..626}	"gi|410170758|ref|XR_171074.1| PREDICTED: Homo sapiens uncharacterized LOC101060004 (LOC101060004), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|410170758|ref|XR_171074.1| PREDICTED: Homo sapiens uncharacterized LOC101060004 (LOC101060004), misc_RNA"	Chr20	 46611970	 46612595	+	101060004	XR_171074.1	NA	NA	NA	NA	NA	inter
CUST_3635_PI429285431	4.877281	P	4.9757614	P	0.934016278970653	0	lncRNA	3605-1_{1..645}	"transcript_id ""ENST00000433966.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433966.1"" | genecode_v17"	chr10	 27232252	 27232896	-	ENSG00000236983.1	ENST00000433966.1	LINC00614	LINC00614-001	NA	NA	NA	inter
CUST_16468_PI429285431	3.2482944	P	3.0847566	A	1.12003032964999	0	lncRNA	18166-1_{1..380}	lnc-KLF11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF11-1:1	chr2	 10178505	 10178884	+	lnc-KLF11-1	lnc-KLF11-1:1	XLOC_001341	linc-KLF11	KLF11	NA	chr2:10183682-10188720	inter
LNCA_21_P0004951	0.9111909	A	0.9004068	A	1.0075029758281	0	lncRNA	TCONS_00011978	NA	NA	NA	NA	XLOC_005488	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005488), lincRNA [TCONS_00011978]"	chr6:143704469-143704528	hs|6q24.2	Agilent_HUMAN_G3V2	TCONS_00011978	TCONS_00011978	chr6	143704469	143704528	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28754_PI429285431	1.2340351	A	1.4846311	A	0.840549099471751	0	lncRNA	30458-1_{1..823}	n326154|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096161|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096161|-1.1836800|-0.3548353	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326154|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096161|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096161|-1.1836800|-0.3548353	chr1	241268838	241269660	-	NA	NA	NA	NA	RGS7	NA	chr1:241258838-241288449	inner
CUST_50863_PI429285431	8.037862	P	7.5096807	P	1.44211008656376	0	lncRNA	54507-1_{1..220}	hg19_lincRNAsTranscripts_TCONS_l2_00005184 range=chr11:107607278-107607590 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005184 range=chr11:107607278-107607590 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	107607278	107607497	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18359_PI429285431	1.0978862	A	0.907595	A	1.14099399594307	0	lncRNA	20087-1_{1..2433}	lnc-ENKUR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ENKUR-1:1	chr10	 25464605	 25467037	-	lnc-ENKUR-1	lnc-ENKUR-1:1	ENSG00000233642	RP11-80K21.1	GPR158	"hg19_refFlat_GPR158:range=chr10:25464350-258882035'pad=0,hg19_refFlat_GPR158:range=chr10:25464350-258882035'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.80chr10:25464290-25475205"	NA	inner
CUST_25782_PI429285431	0.91285354	A	1.380663	A	0.72306163735424	0	lncRNA	27305-1_{1..3000}	lnc-RBFA-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RBFA-1:5	chr18	 77830238	 77833237	+	lnc-RBFA-1	lnc-RBFA-1:5	ENSG00000261126.1	RP11-795F19.1	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70"	NA	inter
CUST_20009_PI429285431	0.9084275	A	0.9139934	A	0.996149444581806	0	lncRNA	21662-1_{1..248}	lnc-MMP9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MMP9-1:1	chr20	 44656302	 44656549	+	lnc-MMP9-1	lnc-MMP9-1:1	ENSG00000240742.1	RP11-465L10.7	SLC12A5	NA	chr20:44650329-44666438	inner
LNCA_24_P931736	0.9087787	A	0.8975732	A	1.00779730259406	0	lncRNA	XR_110065	XR_110065	XR_110065	100133106	Hs.626043	LOC100133106	VCEW9374	NA	NP862617	NA	"PREDICTED: Homo sapiens VCEW9374 (LOC100133106), miscRNA [XR_110065]"	chr5:169372909-169372850	hs|5q35.1	Agilent_HUMAN_G3V2	XR_110065	XR_110065	chr5	169372850	169372909	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51311_PI429285431	11.707181	P	11.724927	P	0.987774753151725	0	lncRNA	54916-1_{1..662}	hg19_lincRNAsTranscripts_TCONS_l2_00008597 range=chr15:41849136-41849865 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008597 range=chr15:41849136-41849865 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 41849136	 41849797	+	NA	NA	NA	NA	TYRO3	NA	chr15:41849175-41859865	inter
LNCA_21_P0008979	2.8591833	A	2.5530906	A	1.23635470002305	0	lncRNA	TCONS_00024483	NA	NA	NA	NA	XLOC_011799	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011799), lincRNA [TCONS_00024483]"	chr16:80103389-80195813	hs|16q23.2	Agilent_HUMAN_G3V2	TCONS_00024483	TCONS_00024483	chr16	 80103389	 80195813	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36436_PI429285431	0.9030237	A	0.8930798	A	1.00691639479074	0	lncRNA	37650-1_{1..513}	n344950|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_499|NULL|-1.4342800|-0.1742876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344950|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_499|NULL|-1.4342800|-0.1742876	chr7	 27034773	 27035285	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_598_PI429285431	0.8919351	A	0.8909749	A	1.00066578145692	0	lncRNA	590-1_{1..385}	"transcript_id ""ENST00000435973.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435973.1"" | genecode_v17"	chr1	230011297	230011681	-	ENSG00000227043.1	ENST00000435973.1	RP11-286M16.1	RP11-286M16.1-001	NA	NA	NA	inter
CUST_38415_PI429285431	2.1074789	A	2.0853775	A	1.01543746850986	0	lncRNA	39445-1_{1..2368}	n382469|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zfw.1||1.2357000|-0.2109374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382469|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zfw.1||1.2357000|-0.2109374	chr15	 32618369	 32620736	-	NA	NA	NA	NA	LOC653125	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60chr15:32608369-32645000"	NA	inter
CUST_49161_PI429285431	0.9095624	A	0.90013003	A	1.00655944018361	0	lncRNA	52987-1_{1..2273}	hg19_lincRNAsTranscripts_TCONS_l2_00021296 range=chr4:132777217-132897368 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021296 range=chr4:132777217-132897368 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	132777217	132779489	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36358_PI429285431	1.8856492	A	2.3353271	A	0.732206304086736	0	lncRNA	37581-1_{1..1968}	n344878|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_427|NULL|-1.2910900|-0.3703995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344878|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_427|NULL|-1.2910900|-0.3703995	chr6	143342825	143344792	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26188_PI429285431	1.0075005	A	0.90764993	A	1.07166245722328	0	lncRNA	27699-1_{1..620}	lnc-AP001496.1-10:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP001496.1-10:2	chr18	  5889079	  5889698	+	lnc-AP001496.1-10	lnc-AP001496.1-10:2	ENSG00000264449.1	RP11-945C19.4	TMEM200C	NA	chr18:5890184-5892103	inter
CUST_26519_PI429285431	6.349991	P	6.786615	P	0.738861571270471	0	lncRNA	28026-1_{1..541}	lnc-C11orf55-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf55-1:2	chr11	 35940131	 35940671	-	lnc-C11orf55-1	lnc-C11orf55-1:2	ENSG00000254919.1	RP11-698N11.2	NA	NA	NA	inter
LNCA_21_P0002171	0.9121105	A	0.9009527	A	1.00776398222123	0	lncRNA	TCONS_00003577	NA	NA	NA	NA	XLOC_001351	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001351), lincRNA [TCONS_00003577]"	chr2:11547487-11548076	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_00003577	TCONS_00003577	chr2	 11547487	 11548076	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41356_PI429285431	0.9012349	A	0.9047532	A	0.997564271487022	0	lncRNA	42428-1_{1..73}	ENST00000408313 ncrna:miRNA chromosome:GRCh37:2:180725563:180725635:-1 gene:ENSG00000221240 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408313 ncrna:miRNA chromosome:GRCh37:2:180725563:180725635:-1 gene:ENSG00000221240 gene_biotype:miRNA transcript_biotype:miRNA	chr2	180725563	180725635	-	ENSG00000221240	ENST00000408313	NA	NA	ZNF385B	NA	chr2:180715563-180726232	inner
CUST_16804_PI429285431	0.89460486	A	0.89099145	A	1.00250776414707	0	lncRNA	18511-1_{1..3000}	lnc-NHLRC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NHLRC3-1:1	chr13	 39662919	 39665918	+	lnc-NHLRC3-1	lnc-NHLRC3-1:1	XLOC_010353	linc-COG6-2	NA	NA	NA	inter
CUST_34433_PI429285431	0.90662104	A	0.89332557	A	1.00925831301839	0	lncRNA	35913-1_{1..2104}	n341310|AK094700|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3779|NULL|-1.2463200|-0.4447227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341310|AK094700|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3779|NULL|-1.2463200|-0.4447227	chr7	124382365	124384468	-	NA	NA	NA	NA	GPR37	NA	chr7:124386114-124394470	inter
CUST_2264_PI429285431	0.9046185	A	1.5201488	A	0.652689936322607	0	lncRNA	2256-1_{1..585}	"transcript_id ""ENST00000502383.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502383.1"" | genecode_v17"	chr5	 92161962	 92162546	+	ENSG00000248588.1	ENST00000502383.1	CTC-458G6.4	CTC-458G6.4-001	NA	NA	NA	inter
LNCA_21_P0001972	0.9183637	A	0.9068467	A	1.00801492499126	0	lncRNA	ENST00000424395	NA	NA	NA	NA	XLOC_001874	NA	ENST00000424395	NA	NA	"BROAD Institute lincRNA (XLOC_001874), lincRNA [TCONS_00003112]"	chr2:221662551-221662610	hs|2q36.1	Agilent_HUMAN_G3V2	ENST00000424395	ENST00000424395	chr2	221662551	221662610	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15422_PI429285431	8.716535	P	8.591566	P	1.09048430056384	0	lncRNA	17108-1_{1..369}	lnc-RPL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPL3-1:1	chr22	 39686471	 39686839	-	lnc-RPL3-1	lnc-RPL3-1:1	XLOC_014379	linc-PDGFB	NA	NA	NA	inter
CUST_45963_PI429285431	3.4562097	P	3.5007985	P	0.969566125349343	0	lncRNA	50256-1_{1..1695}	"gi|310122826|ref|XR_109120.1| PREDICTED: Homo sapiens ACAH3104 (LOC100128816), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310122826|ref|XR_109120.1| PREDICTED: Homo sapiens ACAH3104 (LOC100128816), misc_RNA"	NA	NA	NA	NA	NA	XR_109120.1	NA	NA	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40"	NA	Unknown
CUST_5000_PI429285431	3.4026172	P	2.4495234	A	1.9360199243009	0	lncRNA	4943-2_{3001..4482}	"transcript_id ""ENST00000522771.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522771.1"" | genecode_v17"	chr14	101295456	101296937	+	ENSG00000214548.9	ENST00000522771.1	MEG3	MEG3-015	NA	NA	NA	inter
CUST_5875_PI429285431	1.7134639	A	2.6733832	A	0.514085668922256	0	lncRNA	5805-1_{1..826}	"transcript_id ""ENST00000586411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586411.1"" | genecode_v17"	chr17	 43627147	 43627972	-	ENSG00000267246.1	ENST00000586411.1	RP11-798G7.7	RP11-798G7.7-001	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50"	NA	inter
CUST_8154_PI429285431	0.92578286	A	0.9271884	A	0.999026228335475	0	lncRNA	9757-1_{1..590}	lnc-PRKD1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PRKD1-3:3	chr14	 29847499	 29848088	-	lnc-PRKD1-3	lnc-PRKD1-3:3	ENSG00000257522	RP11-562L8.1	NA	NA	NA	inter
LNCA_21_P0005591	2.936155	A	3.0476809	P	0.925608552544878	0	lncRNA	TCONS_00014243	NA	NA	NA	NA	XLOC_006323	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006323), lincRNA [TCONS_00014243]"	chr7:158975392-158975451	hs|7q36.3	Agilent_HUMAN_G3V2	TCONS_00014243	TCONS_00014243	chr7	158975392	158975451	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12385_PI429285431	1.0846462	A	1.8634465	A	0.58285127262642	0	lncRNA	13998-1_{1..256}	lnc-ZNF397-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF397-1:1	chr18	 32906761	 32907016	+	lnc-ZNF397-1	lnc-ZNF397-1:1	XLOC_012658	linc-GALNT1	ZNF24	NA	chr18:32912178-32916945	inter
CUST_13304_PI429285431	0.90146506	A	0.89728117	A	1.00290426077479	0	lncRNA	14938-1_{1..1274}	lnc-NDUFS6-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDUFS6-5:3	chr5	  2066640	  2067913	+	lnc-NDUFS6-5	lnc-NDUFS6-5:3	XLOC_004250	linc-C5orf38-5	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20"	NA	inter
CUST_33786_PI429285431	0.90706164	A	0.9039874	A	1.00213317277095	0	lncRNA	35339-1_{1..2022}	n340574|AX747345|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3036|NULL|0.8036980|-0.3141002	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n340574|AX747345|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3036|NULL|0.8036980|-0.3141002	chr5	101942492	101944513	-	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40"	NA	inter
CUST_18423_PI429285431	4.0977426	P	3.423197	P	1.59609397807408	0	lncRNA	20148-1_{1..3000}	lnc-CCNJ-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCNJ-1:4	chr10	 97920102	 97923101	+	lnc-CCNJ-1	lnc-CCNJ-1:4	ENSG00000177853	ZNF518A	ZNF518A	NA	chr10:97910102-97923517	inner
CUST_11046_PI429285431	1.7451035	A	1.9195167	A	0.886127868368687	0	lncRNA	12593-1_{1..1819}	lnc-QKI-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-QKI-2:2	chr6	164194173	164195991	+	lnc-QKI-2	lnc-QKI-2:2	XLOC_005531	linc-FGFR1OP-9	NA	NA	NA	inter
CUST_51059_PI429285431	0.91136694	A	0.9151432	A	0.997385918704519	0	lncRNA	54697-2_{3001..3194}	hg19_lincRNAsTranscripts_TCONS_l2_00006745 range=chr13:24532747-24545841 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006745 range=chr13:24532747-24545841 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 24535747	 24535940	+	NA	NA	NA	NA	NA	"hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30"	NA	inter
LNCA_21_P0011599	0.93165904	A	2.4306998	A	0.353788544466254	0	lncRNA	TCONS_l2_00011380	NA	NA	NA	NA	XLOC_l2_006152	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006152), lincRNA [TCONS_l2_00011380]"	chr17:58209939-58209880	hs|17q23.1	Agilent_HUMAN_G3V2	TCONS_l2_00011380	TCONS_l2_00011380	chr17	 58209880	 58209939	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24426_PI429285431	3.3409371	P	3.8389473	P	0.708082712873107	0	lncRNA	25979-1_{1..265}	lnc-CCDC7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC7-1:1	chr10	 32663231	 32663495	+	lnc-CCDC7-1	lnc-CCDC7-1:1	ENSG00000229327.1	RP11-135A24.2	NA	NA	NA	inter
LNCA_21_P0010806	7.897319	P	7.9060183	P	0.993988248064843	0	lncRNA	TCONS_l2_00002904	NA	NA	NA	NA	XLOC_l2_001496	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001496), lincRNA [TCONS_l2_00002904]"	chr10:19444062-19444121	hs|10p12.31	Agilent_HUMAN_G3V2	TCONS_l2_00002904	TCONS_l2_00002904	chr10	 19444062	 19444121	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28259_PI429285431	0.9158867	A	1.1899569	A	0.826983127348408	0	lncRNA	29895-1_{1..595}	n325552|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255660|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255660|-0.4215200|-0.2530423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325552|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255660|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255660|-0.4215200|-0.2530423	chr17	 44065867	 44066461	-	NA	NA	NA	NA	MAPT	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50chr17:44055867-44089151"	NA	inner
CUST_48063_PI429285431	2.0142643	A	1.2742308	A	1.67021462150908	0	lncRNA	51939-1_{1..2966}	"gi|310114183|ref|XR_112352.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 342 (LINC00342), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,UCSC,"	">gi|310114183|ref|XR_112352.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 342 (LINC00342), misc_RNA"	NA	NA	NA	NA	NA	XR_112352.1	NA	NA	NA	NA	NA	Unknown
CUST_33393_PI429285431	1.3042969	A	0.90732205	A	1.31674396752034	0	lncRNA	34971-1_{1..1496}	n340113|BC031678|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2572|NULL|-0.9686880|-0.2948629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340113|BC031678|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2572|NULL|-0.9686880|-0.2948629	chr10	 97888811	 97890306	-	NA	NA	NA	NA	ZNF518A	NA	chr10:97889472-97900249	inner
CUST_2491_PI429285431	2.1002653	A	2.444592	A	0.787675495803222	0	lncRNA	2483-1_{1..470}	"transcript_id ""ENST00000445568.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445568.1"" | genecode_v17"	chr6	 19730658	 19731127	-	ENSG00000227116.1	ENST00000445568.1	RP3-471C18.1	RP3-471C18.1-001	NA	NA	NA	inter
CUST_2112_PI429285431	0.90857464	A	0.9198821	A	0.992192900930535	0	lncRNA	2103-1_{1..572}	"transcript_id ""ENST00000502861.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502861.1"" | genecode_v17"	chr5	 24882052	 24882623	-	ENSG00000250524.1	ENST00000502861.1	RP11-730N24.2	RP11-730N24.2-001	NA	NA	NA	inter
LNCA_21_P0014215	0.91257066	A	0.92010504	A	0.994791178947176	0	lncRNA	XR_108888	XR_108888	XR_108888	NA	NA	LOC100507101	uncharacterized LOC100507101	NA	THC2582227	NA	"PREDICTED: Homo sapiens hypothetical LOC100507101 (LOC100507101), miscRNA [XR_108888]"	chr8:128944183-128944242	hs|8q24.21	Agilent_HUMAN_G3V2	XR_108888	XR_108888	chr8	128944183	128944242	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007252	0.9160149	A	0.9220505	A	0.995825179769675	0	lncRNA	TCONS_00019425	NA	NA	NA	NA	XLOC_009243	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009243), lincRNA [TCONS_00019425]"	chr11:87670718-87670777	hs|11q14.2	Agilent_HUMAN_G3V2	TCONS_00019425	TCONS_00019425	chr11	 87670718	 87670777	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3380_PI429285431	0.90640116	A	1.7463393	A	0.558667523115867	0	lncRNA	3354-1_{1..618}	"transcript_id ""ENST00000602614.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602614.1"" | genecode_v17"	chr9	 24545996	 24546613	+	ENSG00000269957.1	ENST00000602614.1	RP11-20A20.2	RP11-20A20.2-001	NA	NA	NA	inter
CUST_12105_PI429285431	0.92307806	A	0.9427198	A	0.986477643023485	0	lncRNA	13702-1_{1..1126}	lnc-COPG-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COPG-2:1	chr3	128954500	128955625	+	lnc-COPG-2	lnc-COPG-2:1	XLOC_002813	linc-COPG-2	COPG	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10chr3:128944500-128965149"	NA	inter
CUST_11203_PI429285431	0.9127215	A	0.91493535	A	0.998466652894086	0	lncRNA	12761-1_{1..2623}	lnc-PENK-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PENK-2:7	chr8	 57472012	 57474634	-	lnc-PENK-2	lnc-PENK-2:7	XLOC_007087	linc-PENK-1	NA	NA	NA	inter
CUST_132_PI429201921	0.8983668	A	0.90532994	A	0.995185147883739	0	lncRNA	121-2_{3001..3553}	TC15002668.hg.1	 TCONS_00023201-XLOC_011552 // Rinn lincRNAs // linc-AP3B2 chr15:-:83379224-83382745 // chr15 // 100 // 100 // 0 // --- // 0///TCONS_00023250-XLOC_011552 // Rinn lincRNAs // linc-AP3B2 chr15:-:83379224-83382778 // chr15 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr15:-:83379224-83382778	NA	Affy_HUMAN_HTA2.0	TCONS_00023250-XLOC_011552	linc-AP3B2	chr15	 83379224	 83382778	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34683_PI429285431	1.0877737	A	0.99427915	A	1.06695146477902	0	lncRNA	36135-1_{1..2729}	n341588|BC040336|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4059|NULL|-0.9539360|-0.2284734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n341588|BC040336|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4059|NULL|-0.9539360|-0.2284734	chr8	116962735	116965463	-	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30"	NA	inter
CUST_46453_PI429285431	7.9688244	P	8.366999	P	0.758817786147103	0	lncRNA	50658-3_{6001..7057}	"gi|388454171|ref|NR_049761.1| Homo sapiens mitogen-activated protein kinase binding protein 1 (MAPKBP1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388454171|ref|NR_049761.1| Homo sapiens mitogen-activated protein kinase binding protein 1 (MAPKBP1), transcript variant 4, non-coding RNA"	Chr15	 42072632	 42073688	+	23005	NR_049761.1	NA	NA	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.71;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90"	NA	inter
CUST_9129_PI429285431	0.89776564	A	0.9008287	A	0.997879100888786	0	lncRNA	10648-1_{1..3000}	lnc-TIGIT-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TIGIT-1:2	chr3	113952189	113955188	+	lnc-TIGIT-1	lnc-TIGIT-1:2	ENSG00000241490	RP11-553L6.2	ZNF80	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30chr3:113950248-113956425"	NA	inner
CUST_50361_PI429285431	6.9410267	P	7.1741104	P	0.850814366871822	0	lncRNA	54075-1_{1..920}	hg19_lincRNAsTranscripts_TCONS_l2_00029661 range=chr9:140065313-140066841 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029661 range=chr9:140065313-140066841 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	140065313	140066232	-	NA	NA	NA	NA	GRIN1	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40chr9:140055313-140063214"	NA	inter
CUST_634_PI429285431	1.1323144	A	2.0981078	A	0.511996765055583	0	lncRNA	626-1_{1..944}	"transcript_id ""ENST00000592366.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592366.1"" | genecode_v17"	chr2	   309023	   309966	-	ENSG00000235779.2	ENST00000592366.1	AC079779.5	AC079779.5-023	NA	NA	NA	inter
CUST_52017_PI429285431	2.6994264	A	1.7027252	A	1.99543211650769	0	lncRNA	55547-1_{1..746}	hg19_lincRNAsTranscripts_TCONS_l2_00017139 range=chr21:15282788-15297607 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017139 range=chr21:15282788-15297607 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 15282788	 15283533	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16777_PI429285431	3.8497126	P	4.5984674	P	0.595116985456035	0	lncRNA	18486-1_{1..578}	lnc-VPS8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VPS8-1:1	chr3	184493955	184494532	+	lnc-VPS8-1	lnc-VPS8-1:1	XLOC_002953	linc-VPS8-1	NA	NA	NA	inter
CUST_41161_PI429285431	0.8999449	A	0.98850405	A	0.940461539138405	0	lncRNA	41975-1_{1..83}	ENST00000408707 ncrna:miRNA chromosome:GRCh37:15:86313727:86313809:-1 gene:ENSG00000221634 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408707 ncrna:miRNA chromosome:GRCh37:15:86313727:86313809:-1 gene:ENSG00000221634 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 86313727	 86313809	-	ENSG00000221634	ENST00000408707	NA	NA	KLHL25	NA	chr15:86303727-86323809	inner
CUST_3980_PI429285431	6.3705397	P	6.805228	P	0.739853585666706	0	lncRNA	3943-8_{21001..22743}	"transcript_id ""ENST00000501122.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000501122.2"" | genecode_v17"	chr11	 65211269	 65213011	+	ENSG00000245532.3	ENST00000501122.2	NEAT1	NEAT1-001	FRMD8	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr11:65180269-65180996"	NA	inter
CUST_14016_PI429285431	1.4347615	A	1.3853843	A	1.03481810464065	0	lncRNA	15664-1_{1..228}	lnc-MYO6-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYO6-3:2	chr6	 77599901	 77600128	+	lnc-MYO6-3	lnc-MYO6-3:2	XLOC_005355	linc-IRAK1BP1-2	NA	NA	NA	inter
CUST_41064_PI429285431	7.554111	P	7.812935	P	0.835768911415096	0	lncRNA	41725-1_{1..135}	ENST00000581279 ncrna:miRNA chromosome:GRCh37:16:1429290:1429424:-1 gene:ENSG00000265529 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581279 ncrna:miRNA chromosome:GRCh37:16:1429290:1429424:-1 gene:ENSG00000265529 gene_biotype:miRNA transcript_biotype:miRNA	chr16	  1429290	  1429424	-	ENSG00000265529	ENST00000581279	NA	NA	UNKL	NA	chr16:1419290-1439424	inner
LNCA_21_P0008658	0.92518795	A	0.9151751	A	1.00696451899061	0	lncRNA	TCONS_00023472	NA	NA	NA	NA	XLOC_011319	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011319), lincRNA [TCONS_00023472]"	chr15:78439368-78439427	hs|15q25.1	Agilent_HUMAN_G3V2	TCONS_00023472	TCONS_00023472	chr15	 78439368	 78439427	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50922_PI429285431	1.6950315	A	1.3675026	A	1.25486215962922	0	lncRNA	54563-1_{1..355}	hg19_lincRNAsTranscripts_TCONS_l2_00005521 range=chr12:10903014-10930019 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005521 range=chr12:10903014-10930019 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 10903014	 10903368	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6088_PI429285431	5.1939216	P	5.357575	P	0.892761427012922	0	lncRNA	6013-1_{1..296}	"transcript_id ""ENST00000589395.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589395.1"" | genecode_v17"	chr18	 11620716	 11621011	-	ENSG00000267143.1	ENST00000589395.1	RP11-677O4.6	RP11-677O4.6-001	NA	NA	NA	inter
CUST_36860_PI429285431	0.91196984	A	0.91787946	A	0.995912141691802	0	lncRNA	38020-1_{1..1951}	n345329|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_878|NULL|-1.3182100|-0.3384931	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345329|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_878|NULL|-1.3182100|-0.3384931	chr16	 25271883	 25273833	-	NA	NA	NA	NA	ZKSCAN2	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr16:25261883-25268855"	NA	inter
CUST_570_PI429285431	0.91077024	A	0.9044776	A	1.00437125184485	0	lncRNA	562-1_{1..1126}	"transcript_id ""ENST00000420237.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420237.1"" | genecode_v17"	chr1	219395590	219396715	-	ENSG00000223842.1	ENST00000420237.1	RP11-135J2.3	RP11-135J2.3-001	LYPLAL1	NA	chr1:219385590-219386207	inter
CUST_1080_PI429285431	0.9402141	A	0.9569268	A	0.988482479474094	0	lncRNA	1069-1_{1..826}	"transcript_id ""ENST00000412593.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412593.1"" | genecode_v17"	chr2	139228226	139229051	+	ENSG00000230569.1	ENST00000412593.1	AC114763.1	AC114763.1-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50"	NA	inter
CUST_21258_PI429285431	5.852287	P	6.430498	P	0.669793833985742	0	lncRNA	22883-1_{1..497}	lnc-GTF2A2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-GTF2A2-2:1	chr15	 59651806	 59652302	-	lnc-GTF2A2-2	lnc-GTF2A2-2:1	ENSG00000259735.1	RP11-356M20.3	MYO1E	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-59.70chr15:59641806-59662088"	NA	inner
CUST_31307_PI429285431	1.696778	A	1.1298904	A	1.48132438392224	0	lncRNA	33091-1_{1..3000}	n337771|AL832122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|153|NULL|0.2177250|-0.4086090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337771|AL832122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|153|NULL|0.2177250|-0.4086090	chr1	 23607801	 23610800	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10"	NA	inter
CUST_45590_PI429285431	6.3899465	P	6.632191	P	0.845428996591445	0	lncRNA	49980-1_{1..3000}	"gi|365733573|ref|NR_045675.1| Homo sapiens Rho GTPase activating protein 22 (ARHGAP22), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|365733573|ref|NR_045675.1| Homo sapiens Rho GTPase activating protein 22 (ARHGAP22), transcript variant 6, non-coding RNA"	Chr10	 49654068	 49657067	-	58504	NR_045675.1	NA	NA	NA	NA	NA	inter
CUST_28007_PI429285431	1.2966024	A	1.2507906	A	1.03226386756913	0	lncRNA	29617-1_{1..574}	n325263|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328343|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328343|-1.1549200|-0.3279157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325263|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328343|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328343|-1.1549200|-0.3279157	chr2	 67405262	 67405835	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13439_PI429285431	0.90890664	A	1.5695202	A	0.632609199055792	0	lncRNA	15078-1_{1..647}	lnc-JPH4-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JPH4-1:6	chr14	 24198787	 24199433	-	lnc-JPH4-1	lnc-JPH4-1:6	XLOC_010971	linc-JPH4-2	NA	NA	NA	inter
CUST_14612_PI429285431	0.9116745	A	1.143765	A	0.851400297886468	0	lncRNA	16280-1_{1..621}	lnc-QKI-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-QKI-5:1	chr6	165341827	165342447	+	lnc-QKI-5	lnc-QKI-5:1	XLOC_005534	linc-FGFR1OP-6	NA	NA	NA	inter
CUST_18017_PI429285431	1.0804092	A	1.0743039	A	1.00424083849421	0	lncRNA	19750-1_{1..957}	lnc-F13A1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-F13A1-3:3	chr6	  6739263	  6740219	-	lnc-F13A1-3	lnc-F13A1-3:3	XLOC_005595	linc-F13A1-1	NA	NA	NA	inter
LNCA_21_P0009635	0.9149234	A	0.9049794	A	1.00691646458487	0	lncRNA	TCONS_00026726	NA	NA	NA	NA	XLOC_012871	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012871), lincRNA [TCONS_00026726]"	chr18:68004781-68004574	hs|18q22.2	Agilent_HUMAN_G3V2	TCONS_00026726	TCONS_00026726	chr18	 68004574	 68004781	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38516_PI429285431	0.9142129	A	0.91719013	A	0.997938469298999	0	lncRNA	39527-1_{1..2554}	n383133|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002hfn.1||3.0240700|-0.2467894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n383133|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002hfn.1||3.0240700|-0.2467894	chr17	 29035713	 29038266	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40581_PI429285431	9.976283	P	10.1199045	P	0.905243928095454	0	lncRNA	41333-1_{1..3000}	n410027|NR_036464|lncRNA|Homosapiens||RefGeneNoncode|NR_036464||8.9697800|-0.3612971	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410027|NR_036464|lncRNA|Homosapiens||RefGeneNoncode|NR_036464||8.9697800|-0.3612971	chr4	 15606006	 15609005	-	NA	NA	NA	NA	CC2D2A	NA	chr4:15596006-15603180	inter
CUST_112_PI429285431	9.733733	P	9.749585	P	0.989072375940545	0	lncRNA	104-1_{1..439}	"transcript_id ""ENST00000440196.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440196.2"" | genecode_v17"	chr1	   529833	   530271	-	ENSG00000239664.2	ENST00000440196.2	RP5-857K21.3	RP5-857K21.3-001	NA	NA	NA	inter
CUST_35644_PI429285431	6.491537	P	6.289383	P	1.15041468742803	0	lncRNA	37059-1_{1..472}	n342790|X89669|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5293|NULL|3.8293500|-0.1633526	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342790|X89669|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5293|NULL|3.8293500|-0.1633526	chr11	124095810	124096281	+	NA	NA	NA	NA	OR8G2	NA	chr11:124085810-124096312	inner
CUST_376_PI429285431	0.8880555	A	0.88701206	A	1.00072351910785	0	lncRNA	368-1_{1..511}	"transcript_id ""ENST00000442182.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442182.1"" | genecode_v17"	chr1	117838142	117838652	+	ENSG00000235202.1	ENST00000442182.1	RP11-39H13.1	RP11-39H13.1-001	NA	NA	NA	inter
CUST_7491_PI429285431	0.90230244	A	1.053334	A	0.900606278217144	0	lncRNA	9130-1_{1..450}	lnc-ALX4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALX4-4:1	chr11	 43942424	 43942873	-	lnc-ALX4-4	lnc-ALX4-4:1	ENSG00000244926	ENSG00000244926.2	ALKBH3	NA	chr11:43932424-43941825	inter
CUST_19163_PI429285431	11.492119	P	10.806939	P	1.60790258133733	0	lncRNA	20832-1_{1..1020}	lnc-DDX27-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-DDX27-2:1	NA	NA	     1019	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15640_PI429285431	0.8891729	A	0.88648397	A	1.00186556224825	0	lncRNA	17330-1_{1..1298}	lnc-AP3S1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AP3S1-2:2	chr5	115090955	115092252	+	lnc-AP3S1-2	lnc-AP3S1-2:2	XLOC_004515	linc-AP3S1-2	NA	NA	NA	inter
LNCA_21_P0005929	0.90980995	A	0.89884543	A	1.00762897962538	0	lncRNA	TCONS_00015245	NA	NA	NA	NA	XLOC_006731	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006731), lincRNA [TCONS_00015245]"	chr8:19103822-19103881	hs|8p21.3	Agilent_HUMAN_G3V2	TCONS_00015245	TCONS_00015245	chr8	 19103822	 19103881	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26829_PI429285431	1.8299209	A	0.8959675	A	1.91050416122553	0	lncRNA	28345-1_{1..382}	n323902|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056041|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056041|1.0736800|-0.3334216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323902|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056041|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056041|1.0736800|-0.3334216	chrX	 22626494	 22626875	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012457	6.0485816	P	6.2413516	P	0.874924237579642	0	lncRNA	TCONS_l2_00019490	NA	NA	NA	NA	XLOC_l2_010330	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010330), lincRNA [TCONS_l2_00019490]"	chr3:125626473-125626414	hs|3q21.2	Agilent_HUMAN_G3V2	TCONS_l2_00019490	TCONS_l2_00019490	chr3	125626414	125626473	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50475_PI429285431	1.4044038	A	0.9093343	A	1.40938864901356	0	lncRNA	54175-1_{1..548}	hg19_lincRNAsTranscripts_TCONS_l2_00030552 range=chrX:99405872-99406499 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030552 range=chrX:99405872-99406499 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 99405872	 99406419	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32922_PI429285431	0.9096287	A	0.90456843	A	1.00351367040143	0	lncRNA	34547-1_{1..1442}	n339595|AK055580|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2039|NULL|-1.1559000|-0.3521976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339595|AK055580|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2039|NULL|-1.1559000|-0.3521976	chr20	 20389470	 20390911	-	NA	NA	NA	NA	RALGAPA2	NA	chr20:20379470-20400912	inner
CUST_1304_PI429285431	4.4174623	P	4.5052085	P	0.940991632911655	0	lncRNA	1294-1_{1..670}	"transcript_id ""ENST00000429065.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429065.2"" | genecode_v17"	chr3	 10051572	 10052241	-	ENSG00000206567.5	ENST00000429065.2	AC022007.5	AC022007.5-006	LOC401052	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-58.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80chr3:10048102-10052779"	NA	inner
CUST_45291_PI429285431	2.8640661	A	3.4506881	P	0.665900256046007	0	lncRNA	49738-1_{1..3000}	"gi|224028269|ref|NR_026974.1| Homo sapiens ZNF252P antisense RNA 1 (ZNF252P-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224028269|ref|NR_026974.1| Homo sapiens ZNF252P antisense RNA 1 (ZNF252P-AS1), non-coding RNA"	Chr8	146228197	146231196	+	286103	NR_026974.1	NA	NA	NA	"hg19_refFlat_ZNF167:range=chr3:44598540-446128675'pad=0,hg19_refFlat_ZNF167:range=chr3:44598540-446128675'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZFP90:range=chr16:68573696-685986015'pad=0,hg19_refFlat_ZFP90:range=chr16:68573696-685986015'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20"	NA	inter
CUST_36406_PI429285431	4.003376	P	4.033002	P	0.979674232524455	0	lncRNA	37624-1_{1..1383}	n344923|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_472|NULL|-1.3870100|-0.3605864	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344923|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_472|NULL|-1.3870100|-0.3605864	chr6	125237916	125239298	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13771_PI429285431	1.9662263	A	2.13691	A	0.888421554213005	0	lncRNA	15414-1_{1..287}	lnc-MC3R-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MC3R-1:1	chr20	 54750606	 54750892	+	lnc-MC3R-1	lnc-MC3R-1:1	XLOC_013576	linc-MC3R-1	NA	NA	NA	inter
CUST_17318_PI429285431	4.458633	P	3.926245	P	1.44632121747266	0	lncRNA	19036-1_{1..492}	lnc-MDM1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-MDM1-1:4	chr12	 68845147	 68845638	-	lnc-MDM1-1	lnc-MDM1-1:4	XLOC_010117	linc-MDM1-1	NA	NA	NA	inter
CUST_1895_PI429285431	8.116846	P	8.2177	P	0.932480848246818	0	lncRNA	1886-1_{1..689}	"transcript_id ""ENST00000514526.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514526.1"" | genecode_v17"	chr4	135988388	135989076	+	ENSG00000248434.1	ENST00000514526.1	RP11-553P9.2	RP11-553P9.2-001	NA	NA	NA	inter
CUST_42418_PI429285431	6.868539	P	6.7799273	P	1.06334643569147	0	lncRNA	45129-1_{1..90}	ENST00000516717 ncrna:snoRNA chromosome:GRCh37:16:50185553:50185642:-1 gene:ENSG00000252526 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516717 ncrna:snoRNA chromosome:GRCh37:16:50185553:50185642:-1 gene:ENSG00000252526 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 50185553	 50185642	-	ENSG00000252526	ENST00000516717	NA	NA	PAPD5	NA	chr16:50185130-50195642	inter
CUST_16824_PI429285431	2.1655436	A	1.8444575	A	1.24927067986816	0	lncRNA	18531-1_{1..3000}	lnc-OSTC-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OSTC-2:1	chr4	109598952	109601951	+	lnc-OSTC-2	lnc-OSTC-2:1	XLOC_003641	linc-SEC24B-2	OSTC	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80chr4:109588952-109588978"	NA	inter
CUST_6880_PI429285431	6.4174366	P	6.6752543	P	0.836352075296935	0	lncRNA	6831-1_{1..952}	"transcript_id ""ENST00000412906.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412906.1"" | genecode_v17"	chr21	 43429303	 43430254	+	ENSG00000237232.3	ENST00000412906.1	ZNF295-AS1	ZNF295-AS1-001	ZNF295	NA	chr21:43419303-43430496	inner
CUST_1198_PI429285431	2.417077	A	2.4250782	A	0.994469341496526	0	lncRNA	1189-1_{1..989}	"transcript_id ""ENST00000413290.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413290.1"" | genecode_v17"	chr2	196313256	196314244	+	ENSG00000224099.1	ENST00000413290.1	AC064834.1	AC064834.1-001	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90"	NA	inter
CUST_14812_PI429285431	5.924531	P	6.306793	P	0.767233702208001	0	lncRNA	16474-1_{1..3000}	lnc-CRYBA4-1:27	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:27	chr22	 27117613	 27120612	+	lnc-CRYBA4-1	lnc-CRYBA4-1:27	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
CUST_50300_PI429285431	5.1718507	P	5.3857746	P	0.862189022996197	0	lncRNA	54018-1_{1..995}	hg19_lincRNAsTranscripts_TCONS_l2_00029473 range=chr9:95853715-95857831 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029473 range=chr9:95853715-95857831 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 95853715	 95854709	-	NA	NA	NA	NA	SUSD3	NA	chr9:95843715-95847415	inter
LNCA_21_P0008680	0.9135726	A	0.90243876	A	1.00774724561105	0	lncRNA	TCONS_00023527	NA	NA	NA	NA	XLOC_011365	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011365), lincRNA [TCONS_00023527]"	chr15:95222855-95222914	hs|15q26.2	Agilent_HUMAN_G3V2	TCONS_00023527	TCONS_00023527	chr15	 95222855	 95222914	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42684_PI429285431	11.271758	P	10.931497	P	1.26598560450032	0	lncRNA	45604-1_{1..73}	ENST00000577778 ncrna:snoRNA chromosome:GRCh37:HG79_PATCH:136225991:136226063:1 gene:ENSG00000266284 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577778 ncrna:snoRNA chromosome:GRCh37:HG79_PATCH:136225991:136226063:1 gene:ENSG00000266284 gene_biotype:snoRNA transcript_biotype:snoRNA	chrHG79_PATCH	136225991	136226063	+	ENSG00000266284	ENST00000577778	NA	NA	NA	NA	NA	Unknown
CUST_42498_PI429285431	2.77136	A	2.929203	A	0.896364240300227	0	lncRNA	45267-1_{1..131}	ENST00000384442 ncrna:snoRNA chromosome:GRCh37:4:169392560:169392690:1 gene:ENSG00000207171 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384442 ncrna:snoRNA chromosome:GRCh37:4:169392560:169392690:1 gene:ENSG00000207171 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	169392560	169392690	+	ENSG00000207171	ENST00000384442	NA	NA	DDX60L	NA	chr4:169382560-169401638	inner
CUST_6765_PI429285431	1.5383545	A	1.7729532	A	0.849921380361419	0	lncRNA	6712-2_{3001..3475}	"transcript_id ""ENST00000458468.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000458468.1"" | genecode_v17"	chr21	 17445842	 17446316	+	ENSG00000215386.6	ENST00000458468.1	LINC00478	LINC00478-001	NA	NA	NA	inter
CUST_41002_PI429285431	4.5669107	P	4.636331	P	0.953020861502501	0	lncRNA	41666-1_{1..3000}	n411545|NR_040016|lncRNA|Homosapiens||RefGeneNoncode|NR_040016||1.6971800|-0.2933111	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411545|NR_040016|lncRNA|Homosapiens||RefGeneNoncode|NR_040016||1.6971800|-0.2933111	chr21	 34804792	 34807791	-	NA	NA	NA	NA	IFNGR2	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_IFNGR2:range=chr21:34775850-348092695'pad=0,hg19_refFlat_IFNGR2:range=chr21:34775850-348092695'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr21:34794792-34809828"	NA	inner
CUST_39721_PI429285431	2.209467	A	1.2725053	A	1.91449209066631	0	lncRNA	40653-2_{3001..6000}	n405658|NR_002824|lncRNA|Homosapiens||RefGeneNoncode|NR_002824||16.0397000|-0.2276221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405658|NR_002824|lncRNA|Homosapiens||RefGeneNoncode|NR_002824||16.0397000|-0.2276221	chr15	 23285264	 23288263	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42520_PI429285431	5.336236	P	6.4903364	P	0.44934629132065	0	lncRNA	45312-1_{1..140}	ENST00000408376 ncrna:snoRNA chromosome:GRCh37:14:81669039:81669178:-1 gene:ENSG00000221303 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408376 ncrna:snoRNA chromosome:GRCh37:14:81669039:81669178:-1 gene:ENSG00000221303 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 81669039	 81669178	-	ENSG00000221303	ENST00000408376	NA	NA	GTF2A1	NA	chr14:81659039-81679178	inter
CUST_17690_PI429285431	0.9116887	A	0.9120522	A	0.99974807273887	0	lncRNA	19419-1_{1..628}	lnc-CADM2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CADM2-4:2	chr3	 83486358	 83486985	+	lnc-CADM2-4	lnc-CADM2-4:2	XLOC_002721	linc-CADM2-3	NA	NA	NA	inter
LNCA_21_P0005856	8.197038	P	8.270244	P	0.950523367905423	0	lncRNA	TCONS_00015037	NA	NA	NA	NA	XLOC_007118	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007118), lincRNA [TCONS_00015037]"	chr8:70235274-70235215	hs|8q13.2	Agilent_HUMAN_G3V2	TCONS_00015037	TCONS_00015037	chr8	 70235215	 70235274	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44733_PI429285431	0.9057284	A	0.89672565	A	1.00625974158274	0	lncRNA	49287-1_{1..3000}	"gi|337298998|ref|NR_038989.1| Homo sapiens uncharacterized LOC100507584 (LOC100507584), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|337298998|ref|NR_038989.1| Homo sapiens uncharacterized LOC100507584 (LOC100507584), non-coding RNA"	Chr6	 33857288	 33860287	-	100507584	NR_038989.1	NA	NA	NA	NA	NA	inter
CUST_21110_PI429285431	4.6468773	P	5.12127	P	0.719769712067949	0	lncRNA	22735-1_{1..624}	lnc-SLC35F5-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC35F5-8:1	chr2	115592751	115593374	-	lnc-SLC35F5-8	lnc-SLC35F5-8:1	ENSG00000235717.1	AC068542.2	DPP10	NA	chr2:115582751-115603165	inner
CUST_23332_PI429285431	2.130592	A	1.9626343	A	1.12346696235614	0	lncRNA	24903-1_{1..373}	lnc-KDM5A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-KDM5A-3:1	chr12	   695414	   695786	-	lnc-KDM5A-3	lnc-KDM5A-3:1	ENSG00000256020.1	RP5-1154L15.2	NINJ2	NA	chr12:685414-705652	inner
CUST_6703_PI429285431	3.5413916	P	3.817587	P	0.82576581484741	0	lncRNA	6652-1_{1..423}	"transcript_id ""ENST00000414085.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414085.1"" | genecode_v17"	chr20	 45529782	 45530204	-	ENSG00000236028.1	ENST00000414085.1	RP11-323C15.2	RP11-323C15.2-001	EYA2	NA	chr20:45519782-45540365	inner
CUST_30524_PI429285431	0.9226296	A	0.90484136	A	1.0124061946053	0	lncRNA	32304-1_{1..490}	n335682|CR616786|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000295981_09|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000295981_09|-0.9559190|-0.1956390	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335682|CR616786|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000295981_09|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000295981_09|-0.9559190|-0.1956390	chr6	  2037711	  2038200	-	NA	NA	NA	NA	GMDS	NA	chr6:2027711-2048201	inner
CUST_50100_PI429285431	1.296827	A	1.9211355	A	0.648730646731596	0	lncRNA	53832-1_{1..1098}	hg19_lincRNAsTranscripts_TCONS_l2_00029174 range=chr9:2506419-2621526 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029174 range=chr9:2506419-2621526 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	  2506419	  2507516	-	NA	NA	NA	NA	VLDLR	NA	chr9:2621793-2631526	inter
CUST_46164_PI429285431	1.166408	A	1.1375794	A	1.02018344871838	0	lncRNA	50413-1_{1..2505}	"gi|254826699|ref|NR_026670.2| Homo sapiens uncharacterized LOC116437 (LOC116437), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|254826699|ref|NR_026670.2| Homo sapiens uncharacterized LOC116437 (LOC116437), non-coding RNA"	Chr12	131649556	131652060	+	116437	NR_026670.2	NA	NA	NA	NA	NA	inter
CUST_3877_PI429285431	0.9327388	A	0.9549372	A	0.984731012980165	0	lncRNA	3846-1_{1..510}	"transcript_id ""ENST00000530576.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530576.1"" | genecode_v17"	chr11	 23186446	 23186955	+	ENSG00000255418.1	ENST00000530576.1	RP11-266A24.1	RP11-266A24.1-001	NA	NA	NA	inter
CUST_25230_PI429285431	2.946727	A	2.806445	A	1.10212052357218	0	lncRNA	26761-1_{1..856}	lnc-MTAP-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-MTAP-1:3	chr9	 22077678	 22078533	+	lnc-MTAP-1	lnc-MTAP-1:3	ENSG00000240498.2	CDKN2B-AS1	NA	NA	NA	inter
CUST_46741_PI429285431	12.479186	P	12.266342	P	1.15897062452226	0	lncRNA	50893-1_{1..657}	"gi|84872059|ref|NR_002778.1| Homo sapiens ribosomal protein L29 pseudogene 2 (RPL29P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|84872059|ref|NR_002778.1| Homo sapiens ribosomal protein L29 pseudogene 2 (RPL29P2), non-coding RNA"	Chr17	  7657638	  7658294	+	118432	NR_002778.1	NA	NA	NA	NA	NA	inter
CUST_29357_PI429285431	3.929826	P	3.9614732	P	0.978302680610375	0	lncRNA	31109-1_{1..1058}	n332615|AL442075|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000026436|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000026436|3.6947900|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332615|AL442075|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000026436|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000026436|3.6947900|-1.0000000	chr19	  7933578	  7934635	-	NA	NA	NA	NA	EVI5L	NA	chr19:7923578-7929862	inner
LNCA_21_P0009142	1.330635	A	1.3982867	A	0.954189886282687	0	lncRNA	TCONS_00025087	NA	NA	NA	NA	XLOC_012047	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012047), lincRNA [TCONS_00025087]"	chr16:86513814-86513755	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00025087	TCONS_00025087	chr16	 86513755	 86513814	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29737_PI429285431	6.0830374	P	5.47923	P	1.51972195975346	0	lncRNA	31499-1_{1..215}	n333411|BC010382|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087475|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087475|1.0551100|-0.4450412	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333411|BC010382|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087475|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087475|1.0551100|-0.4450412	chr3	180630452	180630666	+	NA	NA	NA	NA	FXR1	NA	chr3:180620452-180663017	inner
CUST_34983_PI429285431	0.90686285	A	0.90293646	A	1.00272527298148	0	lncRNA	36399-1_{1..2442}	n341908|AK055723|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4389|NULL|-1.0276600|-0.2233831	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341908|AK055723|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4389|NULL|-1.0276600|-0.2233831	chr12	 48121933	 48124374	-	NA	NA	NA	NA	RAPGEF3	NA	chr12:48128453-48134381	inter
CUST_2676_PI429285431	0.9326258	A	0.96566194	A	0.977361282872582	0	lncRNA	2662-1_{1..400}	"transcript_id ""ENST00000433486.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433486.1"" | genecode_v17"	chr6	156818880	156819279	-	ENSG00000227360.1	ENST00000433486.1	RP11-518I13.1	RP11-518I13.1-001	NA	NA	NA	inter
CUST_11126_PI429285431	0.97584295	A	0.909835	A	1.04681605045955	0	lncRNA	12684-1_{1..1499}	lnc-FAM19A5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM19A5-1:1	chr22	 49261382	 49262880	+	lnc-FAM19A5-1	lnc-FAM19A5-1:1	XLOC_014280	linc-ZBED4-3	NA	NA	NA	inter
CUST_41954_PI429285431	8.010723	P	7.882909	P	1.09263686140206	0	lncRNA	43729-1_{1..73}	ENST00000408438 ncrna:miRNA chromosome:GRCh37:12:57588287:57588359:1 gene:ENSG00000221365 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408438 ncrna:miRNA chromosome:GRCh37:12:57588287:57588359:1 gene:ENSG00000221365 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 57588287	 57588359	+	ENSG00000221365	ENST00000408438	NA	NA	LRP1	NA	chr12:57578287-57598359	inner
CUST_18910_PI429285431	0.9046099	A	0.9012395	A	1.00233891425976	0	lncRNA	20601-1_{1..1856}	lnc-B3GAT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-B3GAT1-2:1	chr11	134846532	134848387	-	lnc-B3GAT1-2	lnc-B3GAT1-2:1	ENSG00000254716	RP11-555G19.4	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10"	NA	inter
LNCA_21_P0002902	4.5121574	P	4.578173	P	0.955272606872171	0	lncRNA	ENST00000463978	NA	NA	NA	NA	XLOC_003314	NA	ENST00000463978	NA	NA	"BROAD Institute lincRNA (XLOC_003314), lincRNA [TCONS_00005875]"	chr3:164448739-164448680	hs|3q26.1	Agilent_HUMAN_G3V2	ENST00000463978	ENST00000463978	chr3	164448680	164448739	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47857_PI429285431	6.304313	P	5.358476	P	1.92630613591731	0	lncRNA	51761-1_{1..3000}	"gi|410171124|ref|XR_171157.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171124|ref|XR_171157.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	XR_171157.1	NA	NA	NA	NA	NA	Unknown
CUST_47005_PI429285431	4.627326	P	4.9023438	P	0.826440121456715	0	lncRNA	51102-3_{6001..6213}	"gi|402534576|ref|NR_073130.1| Homo sapiens cadherin 19, type 2 (CDH19), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402534576|ref|NR_073130.1| Homo sapiens cadherin 19, type 2 (CDH19), transcript variant 3, non-coding RNA"	Chr18	 64174424	 64174636	-	28513	NR_073130.1	NA	NA	NA	NA	NA	inter
CUST_25660_PI429285431	0.9122952	A	0.925494	A	0.99089301111827	0	lncRNA	27189-1_{1..573}	lnc-LIN54-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIN54-1:12	chr4	 83821525	 83822097	-	lnc-LIN54-1	lnc-LIN54-1:12	ENSG00000251022.1	RP11-163O17.1	SEC31A	NA	chr4:83811525-83812419	inter
CUST_37855_PI429285431	6.9000616	P	6.60927	P	1.22331131875768	0	lncRNA	38946-1_{1..2058}	n346385|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1935|NULL|-1.2868400|-0.2118871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346385|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1935|NULL|-1.2868400|-0.2118871	chr6	 58239096	 58241153	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014712	3.9571114	P	3.0601301	P	1.86216550238987	0	lncRNA	XR_112469	XR_112469	XR_112469	NA	NA	LOC100509621	uncharacterized LOC100509621	ENST00000413430	THC2677190	NA	"PREDICTED: Homo sapiens hypothetical LOC100509621 (LOC100509621), miscRNA [XR_112469]"	chr3:29305744-29305685	hs|3p24.1	Agilent_HUMAN_G3V2	XR_112469	XR_112469	chr3	 29305685	 29305744	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19899_PI429285431	0.8947448	A	1.0711758	A	0.884889367543911	0	lncRNA	21554-1_{1..665}	lnc-C20orf7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C20orf7-1:1	chr20	 14609283	 14609947	+	lnc-C20orf7-1	lnc-C20orf7-1:1	ENSG00000227927.1	MACROD2-IT1	MACROD2	NA	chr20:14599283-14619554	inner
CUST_20944_PI429285431	0.9151505	A	0.92594993	A	0.992542352828535	0	lncRNA	22575-1_{1..470}	lnc-SMARCC2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMARCC2-4:1	chr12	 56513708	 56514177	-	lnc-SMARCC2-4	lnc-SMARCC2-4:1	ENSG00000258345.1	RP11-603J24.6	ESYT1	NA	chr12:56521986-56523723	inner
CUST_15938_PI429285431	0.8969804	A	1.3344053	A	0.738451512323593	0	lncRNA	17635-1_{1..713}	lnc-CLVS1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLVS1-3:4	chr8	 62781916	 62782628	+	lnc-CLVS1-3	lnc-CLVS1-3:4	XLOC_006817	linc-NKAIN3-1	NA	NA	NA	inter
CUST_30759_PI429285431	5.082423	P	4.3347764	P	1.67905163801901	0	lncRNA	32544-1_{1..320}	n336583|Z25422|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326703|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326703|1.0927800|-0.2446460	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336583|Z25422|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326703|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326703|1.0927800|-0.2446460	chr8	 99718770	 99719089	-	NA	NA	NA	NA	STK3	NA	chr8:99708770-99771568	inner
CUST_26686_PI429285431	0.8956373	A	0.89938724	A	0.997404114813951	0	lncRNA	28188-1_{1..279}	n235|AC009468|7SKRNA|Homosapiens|7SKRNA|NONCODEv2.0|n235|NULL|-1.1545800|-0.3993070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n235|AC009468|7SKRNA|Homosapiens|7SKRNA|NONCODEv2.0|n235|NULL|-1.1545800|-0.3993070	chr7	 53557822	 53558100	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43744_PI429285431	0.9112457	A	0.9232184	A	0.991735497090254	0	lncRNA	48486-1_{1..2884}	"gi|403420641|ref|NR_073154.1| Homo sapiens chromosome 1 open reading frame 145 (C1orf145), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|403420641|ref|NR_073154.1| Homo sapiens chromosome 1 open reading frame 145 (C1orf145), transcript variant 1, non-coding RNA"	Chr1	228392176	228395059	-	574407	NR_073154.1	NA	NA	NA	"hg19_refFlat_OBSCN:range=chr1:228399485-2285484565'pad=0,hg19_refFlat_OBSCN:range=chr1:228399485-2285484565'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.00;hg19_refFlat_OBSCN:range=chr1:228399485-2285664965'pad=0,hg19_refFlat_OBSCN:range=chr1:228399485-2285664965'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.00"	NA	inter
LNCA_21_P0002396	0.92106795	A	0.92443085	A	0.997671729981555	0	lncRNA	TCONS_00004124	NA	NA	NA	NA	XLOC_001969	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001969), lincRNA [TCONS_00004124]"	chr2:7469851-7469792	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_00004124	TCONS_00004124	chr2	  7469792	  7469851	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29309_PI429285431	10.195496	P	10.892811	P	0.616718914955487	0	lncRNA	31060-1_{1..206}	n332494|DQ979832|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468703|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468703|1.2516400|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332494|DQ979832|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468703|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468703|1.2516400|-1.0000000	chr17	 42987820	 42988025	-	NA	NA	NA	NA	GFAP	NA	chr17:42982994-42992920	inner
CUST_11596_PI429285431	0.9022852	A	1.111047	A	0.86527954307087	0	lncRNA	13176-2_{3001..3171}	lnc-B3GAT2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-B3GAT2-3:2	chr6	 72132769	 72132939	-	lnc-B3GAT2-3	lnc-B3GAT2-3:2	XLOC_005764	linc-B3GAT2-4	NA	NA	NA	inter
CUST_5466_PI429285431	6.8503056	P	7.2958775	P	0.73429317713847	0	lncRNA	5399-1_{1..766}	"transcript_id ""ENST00000563962.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563962.1"" | genecode_v17"	chr16	 25097654	 25098419	-	ENSG00000260448.1	ENST00000563962.1	RP11-449H11.1	RP11-449H11.1-001	LCMT1	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr16:25123047-25132800"	NA	inter
LNCA_21_P0008195	2.1014228	A	3.2610526	P	0.447627383296243	0	lncRNA	TCONS_00022078	NA	NA	NA	NA	XLOC_010680	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010680), lincRNA [TCONS_00022078]"	chr13:85741365-85741306	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00022078	TCONS_00022078	chr13	 85741306	 85741365	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18472_PI429285431	6.818133	P	6.742778	P	1.0536202654999	0	lncRNA	20193-1_{1..1941}	lnc-RP11-82I10.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RP11-82I10.1.1-1:1	chr15	 98417183	 98419123	-	lnc-RP11-82I10.1.1-1	lnc-RP11-82I10.1.1-1:1	ENSG00000251209	AC024651.1	NA	NA	NA	inter
CUST_49343_PI429285431	1.582607	A	2.3222284	A	0.598896497415413	0	lncRNA	53156-1_{1..2528}	hg19_lincRNAsTranscripts_TCONS_l2_00022961 range=chr5:74364010-74439962 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022961 range=chr5:74364010-74439962 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 74364010	 74366537	-	NA	NA	NA	NA	ANKRD31	NA	chr5:74364122-74449962	inner
CUST_48074_PI429285431	5.2298346	P	5.689065	P	0.727374170078609	0	lncRNA	51950-1_{1..2167}	"gi|310114575|ref|XR_112605.1| PREDICTED: Homo sapiens FLJ35816 protein (FLJ35816), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310114575|ref|XR_112605.1| PREDICTED: Homo sapiens FLJ35816 protein (FLJ35816), misc_RNA"	NA	NA	NA	NA	NA	XR_112605.1	NA	NA	NA	NA	NA	Unknown
CUST_3165_PI429285431	5.8981304	P	5.483559	P	1.33290263570966	0	lncRNA	3144-1_{1..792}	"transcript_id ""ENST00000517689.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517689.1"" | genecode_v17"	chr8	 67104944	 67105735	+	ENSG00000253138.1	ENST00000517689.1	RP11-366K18.3	RP11-366K18.3-002	NA	"hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0,hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70"	NA	inter
LNCA_21_P0003266	7.5519724	P	7.7988987	P	0.842689877171486	0	lncRNA	TCONS_00007049	NA	NA	NA	NA	XLOC_002948	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002948), lincRNA [TCONS_00007049]"	chr3:184096618-184096677	hs|3q27.1	Agilent_HUMAN_G3V2	TCONS_00007049	TCONS_00007049	chr3	184096618	184096677	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009548	4.8257833	P	5.417177	P	0.663701435633995	0	lncRNA	TCONS_00026496	NA	NA	NA	NA	XLOC_012822	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012822), lincRNA [TCONS_00026496]"	chr18:36174413-36174354	hs|18q12.2	Agilent_HUMAN_G3V2	TCONS_00026496	TCONS_00026496	chr18	 36174354	 36174413	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005734	1.7165017	A	1.6040967	A	1.0810288308423	0	lncRNA	TCONS_00014791	NA	NA	NA	NA	XLOC_006867	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006867), lincRNA [TCONS_00014791]"	chr8:89727101-89727160	hs|8q21.3	Agilent_HUMAN_G3V2	TCONS_00014791	TCONS_00014791	chr8	 89727101	 89727160	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49091_PI429285431	5.5931273	P	5.55407	P	1.02744224583487	0	lncRNA	52915-1_{1..1306}	hg19_lincRNAsTranscripts_TCONS_l2_00020405 range=chr4:9672577-9686917 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020405 range=chr4:9672577-9686917 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	  9672577	  9673882	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6882_PI429285431	6.058512	P	6.450885	P	0.761875411464993	0	lncRNA	6833-1_{1..2869}	"transcript_id ""ENST00000596595.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596595.1"" | genecode_v17"	chr21	 43442192	 43445060	+	ENSG00000237232.3	ENST00000596595.1	ZNF295-AS1	ZNF295-AS1-201	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-62.70"	NA	inter
CUST_19727_PI429285431	3.9062207	P	4.172796	P	0.83129054056075	0	lncRNA	21385-1_{1..563}	lnc-APOC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-APOC3-1:1	chr11	116726006	116726568	+	lnc-APOC3-1	lnc-APOC3-1:1	ENSG00000235910.1	AP006216.12	SIK3	"hg19_refFlat_APOA1:range=chr11:116706524-1167081035'pad=0,hg19_refFlat_APOA1:range=chr11:116706524-1167081035'pad=0 3'pad=0 strand=- repeatMasking=none,-99.90chr11:116716006-116736445"	NA	inner
LNCA_21_P0003210	0.9232398	A	0.91759443	A	1.00392073836215	0	lncRNA	TCONS_00006772	NA	NA	NA	NA	XLOC_003405	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003405), lincRNA [TCONS_00006772]"	chr3:197368056-197366373	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00006772	TCONS_00006772	chr3	197366373	197368056	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11911_PI429285431	0.89804244	A	0.8967145	A	1.0009208816183	0	lncRNA	13492-1_{1..254}	lnc-HELT-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HELT-3:1	chr4	185883840	185884093	+	lnc-HELT-3	lnc-HELT-3:1	XLOC_003811	linc-HELT-2	NA	NA	NA	inter
CUST_47976_PI429285431	5.9506097	P	4.9641995	P	1.9812489902802	0	lncRNA	51866-1_{1..1689}	"gi|410172816|ref|XR_172003.1| PREDICTED: Homo sapiens uncharacterized LOC100996395 (LOC100996395), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172816|ref|XR_172003.1| PREDICTED: Homo sapiens uncharacterized LOC100996395 (LOC100996395), misc_RNA"	NA	NA	NA	NA	NA	XR_172003.1	NA	NA	NA	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-20.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90"	NA	Unknown
CUST_24373_PI429285431	2.3514445	A	2.92366	A	0.67258313085085	0	lncRNA	25926-1_{1..385}	lnc-GANC-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GANC-1:2	chr15	 42503367	 42503751	+	lnc-GANC-1	lnc-GANC-1:2	ENSG00000261002.1	RP11-546B15.1	VPS39	NA	chr15:42493367-42500502	inner
CUST_18605_PI429285431	0.89911026	A	1.3366809	A	0.738376918258601	0	lncRNA	20312-1_{1..553}	lnc-KLF14-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KLF14-2:6	chr7	130773079	130773631	-	lnc-KLF14-2	lnc-KLF14-2:6	ENSG00000231721	AC058791.2	NA	NA	NA	inter
CUST_33793_PI429285431	0.907979	A	0.908548	A	0.999605677020012	0	lncRNA	35346-1_{1..298}	n340582|M86716|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3044|NULL|-1.1973000|-0.6493262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340582|M86716|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3044|NULL|-1.1973000|-0.6493262	chr5	110652222	110652519	+	NA	NA	NA	NA	CAMK4	NA	chr5:110642222-110662510	inner
CUST_19402_PI429285431	5.6537976	P	5.4789863	P	1.12881674944893	0	lncRNA	21064-1_{1..611}	lnc-PDGFRB-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDGFRB-1:2	chr5	149534960	149535570	-	lnc-PDGFRB-1	lnc-PDGFRB-1:2	ENSG00000253830.1	AC005895.3	PDGFRB	NA	chr5:149524960-149535422	inner
CUST_25194_PI429285431	1.7689856	A	2.1629288	A	0.761046652814861	0	lncRNA	26725-1_{1..1808}	lnc-DCUN1D1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-DCUN1D1-5:1	chr3	182203982	182205789	-	lnc-DCUN1D1-5	lnc-DCUN1D1-5:1	ENSG00000241098.1	RP11-139K4.1	NA	NA	NA	inter
CUST_278_PI429285431	1.0044925	A	0.92437744	A	1.05710234482684	0	lncRNA	270-1_{1..499}	"transcript_id ""ENST00000445976.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445976.1"" | genecode_v17"	chr1	 73214604	 73215102	-	ENSG00000225087.1	ENST00000445976.1	RP4-660H19.1	RP4-660H19.1-001	NA	NA	NA	inter
CUST_30661_PI429285431	3.194507	P	3.3814805	A	0.878446603749016	0	lncRNA	32443-1_{1..267}	n336101|X87458|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324301|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324301|1.6078700|-0.0586105	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336101|X87458|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324301|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324301|1.6078700|-0.0586105	chr2	 89185414	 89185680	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002001	0.9189908	A	0.91033435	A	1.00601823113221	0	lncRNA	ENST00000420221	NA	NA	NA	NA	XLOC_001958	NA	ENST00000420221	NA	NA	"BROAD Institute lincRNA (XLOC_001958), lincRNA [TCONS_00003172]"	chr2:5824561-5817275	hs|2p25.2	Agilent_HUMAN_G3V2	ENST00000420221	ENST00000420221	chr2	  5817275	  5824561	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34814_PI429285431	1.2262595	A	1.6622026	A	0.739210369574102	0	lncRNA	36247-2_{3001..3814}	n341721|BC045178|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4194|NULL|0.1635420|-0.3414834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341721|BC045178|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4194|NULL|0.1635420|-0.3414834	chr9	 94038853	 94039666	-	NA	NA	NA	NA	AUH	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50chr9:94025853-94049649"	NA	inner
CUST_49613_PI429285431	0.9217345	A	0.92097455	A	1.0005268959608	0	lncRNA	53402-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00025904 range=chr7:57639696-57672355 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025904 range=chr7:57639696-57672355 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 57639696	 57642695	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40"	NA	inter
CUST_20138_PI429285431	5.8645415	P	5.118319	P	1.67739504560047	0	lncRNA	21783-3_{6001..7751}	lnc-XPC-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XPC-5:2	chr3	 14587776	 14589526	-	lnc-XPC-5	lnc-XPC-5:2	ENSG00000144596.7	GRIP2	GRIP2	NA	chr3:14571776-14583588	inner
CUST_14116_PI429285431	1.306136	A	0.9158159	A	1.31068418150293	0	lncRNA	15764-1_{1..391}	lnc-NBEA-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NBEA-3:1	chr13	 35273054	 35273444	+	lnc-NBEA-3	lnc-NBEA-3:1	XLOC_010342	linc-NBEA-1	NA	NA	NA	inter
CUST_29574_PI429285431	9.068343	P	7.2800903	P	3.4539631716078	0	lncRNA	31334-1_{1..432}	n333074|AF274932|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075889|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075889|-1.2614900|-0.5580548	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333074|AF274932|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075889|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075889|-1.2614900|-0.5580548	chrX	 24096518	 24096949	+	NA	NA	NA	NA	EIF2S3	NA	chrX:24086518-24096927	inner
CUST_42612_PI429285431	6.778616	P	6.7988586	P	0.986066876004476	0	lncRNA	45474-1_{1..141}	ENST00000363367 ncrna:snoRNA chromosome:GRCh37:19:9930630:9930770:1 gene:ENSG00000200237 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363367 ncrna:snoRNA chromosome:GRCh37:19:9930630:9930770:1 gene:ENSG00000200237 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	  9930630	  9930770	+	ENSG00000200237	ENST00000363367	NA	NA	FBXL12	NA	chr19:9920943-9929731	inter
CUST_26007_PI429285431	1.905342	A	2.7410407	A	0.560311613295005	0	lncRNA	27526-1_{1..707}	lnc-AC108463.1-3:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC108463.1-3:14	chr2	112237746	112238452	-	lnc-AC108463.1-3	lnc-AC108463.1-3:14	ENSG00000172965.6	AC068491.1	NA	NA	NA	inter
CUST_43572_PI429285431	8.832325	P	8.332004	P	1.41452826024603	0	lncRNA	48345-2_{3001..6000}	"gi|410170851|ref|XR_110613.3| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170851|ref|XR_110613.3| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	XR_110613.3	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007060	1.1288872	A	1.9631706	A	0.56086155497111	0	lncRNA	TCONS_00018732	NA	NA	NA	NA	XLOC_008486	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008486), lincRNA [TCONS_00018732]"	chr10:58072950-58073009	hs|10q21.1	Agilent_HUMAN_G3V2	TCONS_00018732	TCONS_00018732	chr10	 58072950	 58073009	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32834_PI429285431	0.9009353	A	0.8959441	A	1.00346562765637	0	lncRNA	34468-1_{1..1169}	n339487|BC066351|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1927|NULL|-1.1719800|-0.4017797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339487|BC066351|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1927|NULL|-1.1719800|-0.4017797	chr21	 38559912	 38561080	-	NA	NA	NA	NA	TTC3	"hg19_refFlat_TTC3:range=chr21:38459558-385738755'pad=0,hg19_refFlat_TTC3:range=chr21:38459558-385738755'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90chr21:38549912-38575408"	NA	inner
CUST_33361_PI429285431	0.89774364	A	0.8886644	A	1.00631309370906	0	lncRNA	34941-1_{1..2459}	n340079|AK123376|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2534|NULL|0.1618990|-0.2732798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340079|AK123376|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2534|NULL|0.1618990|-0.2732798	chr4	 68473573	 68476031	-	NA	NA	NA	NA	UBA6	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.01;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-36.64;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70chr4:68481479-68486031"	NA	inter
CUST_30637_PI429285431	6.9747148	P	7.137733	P	0.893154584887691	0	lncRNA	32419-1_{1..237}	n336000|X75687|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323539|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323539|1.0789200|-0.2313514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336000|X75687|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323539|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323539|1.0789200|-0.2313514	chr9	 74970778	 74971014	-	NA	NA	NA	NA	ZFAND5	NA	chr9:74966341-74980163	inner
CUST_26271_PI429285431	0.9091799	A	0.9147668	A	0.99613494464558	0	lncRNA	27777-1_{1..557}	lnc-CHMP4C-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHMP4C-5:3	chr8	 82438509	 82439065	+	lnc-CHMP4C-5	lnc-CHMP4C-5:3	ENSG00000253374.1	RP11-257P3.3	FABP12	"hg19_refFlat_FTH1:range=chr11:61732199-617348975'pad=0,hg19_refFlat_FTH1:range=chr11:61732199-617348975'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60chr8:82433755-82443550"	NA	inner
CUST_5024_PI429285431	0.89168215	A	0.88834924	A	1.00231286773115	0	lncRNA	4964-1_{1..737}	"transcript_id ""ENST00000434716.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000434716.2"" | genecode_v17"	chr14	101415387	101416123	+	ENSG00000225746.4	ENST00000434716.2	AL132709.5	AL132709.5-001	NA	NA	NA	inter
CUST_27_PI429201921	10.891092	P	10.394641	P	1.41073890177082	0	lncRNA	28-1_{1..1013}	TC04002899.hg.1	TCONS_l2_00021481-XLOC_l2_011415 // Broad TUCP // linc-FAT1-8 chr4:-:188891432-188892446 // chr4 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr4:-:188891432-188892446	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00021481-XLOC_l2_011415	linc-FAT1-8	chr4	188891432	188892446	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19004_PI429285431	1.3160931	A	1.1591234	A	1.11494280205217	0	lncRNA	20694-1_{1..2767}	lnc-GTF2H2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2H2-3:1	chr5	 70741472	 70744238	-	lnc-GTF2H2-3	lnc-GTF2H2-3:1	ENSG00000250387	RP11-136K7.2	BDP1	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr5:70751442-70752169"	NA	inter
CUST_44436_PI429285431	1.1144534	A	1.750792	A	0.643343613418839	0	lncRNA	49048-1_{1..1581}	"gi|341915257|ref|XR_109844.2| PREDICTED: Homo sapiens hCG38984 (LOC345051), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915257|ref|XR_109844.2| PREDICTED: Homo sapiens hCG38984 (LOC345051), misc_RNA"	Chr4	147145102	147146682	+	345051	XR_109844.3	NA	NA	NA	NA	NA	inter
CUST_31943_PI429285431	4.2639256	P	4.5854006	P	0.800251288612928	0	lncRNA	33670-1_{1..968}	n338500|BC000922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|897|NULL|1.9327800|-0.1658272	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n338500|BC000922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|897|NULL|1.9327800|-0.1658272	chr19	 32880955	 32881922	-	NA	NA	NA	NA	DPY19L3	NA	chr19:32896655-32906445	inter
CUST_3344_PI429285431	3.7602654	P	1.6851456	A	4.21379403867067	0	lncRNA	3321-2_{3001..6000}	"transcript_id ""ENST00000560295.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560295.1"" | genecode_v17"	chr8	141533255	141536254	-	ENSG00000259758.1	ENST00000560295.1	CTA-204B4.6	CTA-204B4.6-001	EIF2C2	NA	chr8:141541264-141549600	inter
CUST_24435_PI429285431	0.9024772	A	0.90332043	A	0.999415688279558	0	lncRNA	25988-1_{1..503}	lnc-IKZF2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IKZF2-5:1	chr2	214492400	214492902	-	lnc-IKZF2-5	lnc-IKZF2-5:1	ENSG00000236738.2	AC114499.1	SPAG16	NA	chr2:214482400-214502419	inter
CUST_47712_PI429285431	0.88889277	A	1.1503386	A	0.834251436093367	0	lncRNA	51675-2_{3001..5845}	"gi|385137092|ref|NR_047631.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 61, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137092|ref|NR_047631.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 61, non-coding RNA"	ChrY	 15363259	 15366103	-	7404	NR_047631.1	NA	NA	NA	NA	NA	inter
CUST_16778_PI429285431	4.809518	P	4.5632873	P	1.18610415304059	0	lncRNA	18487-1_{1..477}	lnc-RGL4-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RGL4-4:5	chr22	 23855463	 23855939	+	lnc-RGL4-4	lnc-RGL4-4:5	XLOC_014172	linc-RGL4-6	NA	NA	NA	inter
CUST_35937_PI429285431	0.9019393	A	0.89983	A	1.00146312467195	0	lncRNA	37300-1_{1..1686}	n344575|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_123|NULL|-1.7566900|-0.2003554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344575|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_123|NULL|-1.7566900|-0.2003554	chr1	246946700	246948385	+	NA	NA	NA	NA	LOC100130097	NA	chr1:246936700-246948062	inter
CUST_24783_PI429285431	1.1911674	A	0.90690815	A	1.21778483299613	0	lncRNA	26326-1_{1..443}	lnc-FZD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FZD3-1:1	chr8	 28313141	 28313583	+	lnc-FZD3-1	lnc-FZD3-1:1	ENSG00000253567.1	RP11-181B11.2	FBXO16	NA	chr8:28303141-28323204	inner
CUST_9242_PI429285431	4.0052567	P	4.256431	P	0.840212235394662	0	lncRNA	10752-1_{1..574}	lnc-CRYBA4-1:24	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:24	chr22	 27061495	 27062068	+	lnc-CRYBA4-1	lnc-CRYBA4-1:24	ENSG00000225783	XLOC_014192	NA	NA	NA	inter
CUST_22248_PI429285431	7.226461	P	5.925417	P	2.46407129616469	0	lncRNA	23849-1_{1..1623}	lnc-GS1-211B7.1.1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GS1-211B7.1.1-1:7	chr8	 30623743	 30625365	+	lnc-GS1-211B7.1.1-1	lnc-GS1-211B7.1.1-1:7	ENSG00000104691.10	UBXN8	UBXN8	NA	chr8:30613743-30624522	inner
CUST_49596_PI429285431	5.7553163	P	5.558235	P	1.1463767855253	0	lncRNA	53386-1_{1..1640}	hg19_lincRNAsTranscripts_TCONS_l2_00025008 range=chr6:160131219-160133539 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025008 range=chr6:160131219-160133539 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	160131219	160132858	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25639_PI429285431	0.8979707	A	0.8873381	A	1.00739718168418	0	lncRNA	27169-1_{1..364}	lnc-PDE12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDE12-1:1	chr3	 57640351	 57640714	+	lnc-PDE12-1	lnc-PDE12-1:1	ENSG00000239801.1	RP11-755B10.2	FAM116A	"hg19_refFlat_DENND6A:range=chr3:57613941-576787455'pad=0,hg19_refFlat_DENND6A:range=chr3:57613941-576787455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80chr3:57630351-57650645"	NA	inner
CUST_12992_PI429285431	0.9269228	A	0.9081388	A	1.01310520690379	0	lncRNA	14619-1_{1..263}	lnc-UTS2R-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UTS2R-1:1	chr17	 80340821	 80341083	+	lnc-UTS2R-1	lnc-UTS2R-1:1	XLOC_012348	linc-HEXDC-3	C17orf101	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.34;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70chr17:80347086-80350907"	NA	inter
CUST_39230_PI429285431	0.9115074	A	1.129585	A	0.859710242714626	0	lncRNA	40203-1_{1..1034}	n386053|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ado.1||0.2237600|-0.2436253	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386053|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ado.1||0.2237600|-0.2436253	chr13	 50656413	 50657446	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19524_PI429285431	1.5961627	A	0.8909997	A	1.63032885382923	0	lncRNA	21180-1_{1..248}	lnc-FAM171B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM171B-1:3	chr2	188419304	188419551	+	lnc-FAM171B-1	lnc-FAM171B-1:3	ENSG00000224063.1	AC007319.1	TFPI	NA	chr2:188409304-188419219	inter
CUST_13015_PI429285431	4.989913	P	4.8444023	P	1.10612214049462	0	lncRNA	14642-1_{1..383}	lnc-OXNAD1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OXNAD1-2:2	chr3	 16580883	 16581265	+	lnc-OXNAD1-2	lnc-OXNAD1-2:2	XLOC_002588	linc-PLCL2-1	NA	NA	NA	inter
CUST_45780_PI429285431	5.2903814	P	3.6520991	P	3.11294977447494	0	lncRNA	50123-2_{3001..3322}	"gi|212549573|ref|NR_015451.1| Homo sapiens long intergenic non-protein coding RNA 294 (LINC00294), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|212549573|ref|NR_015451.1| Homo sapiens long intergenic non-protein coding RNA 294 (LINC00294), non-coding RNA"	Chr11	 33100696	 33101017	+	283267	NR_015451.1	NA	NA	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-24.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PIGC:range=chr1:172410869-1724117625'pad=0,hg19_refFlat_PIGC:range=chr1:172410869-1724117625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20"	NA	inter
CUST_5783_PI429285431	0.9076689	A	0.89484465	A	1.00892871803907	0	lncRNA	5706-1_{1..2552}	"transcript_id ""ENST00000577956.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577956.1"" | genecode_v17"	chr17	 21812188	 21814739	+	ENSG00000264956.1	ENST00000577956.1	RP11-1109M24.5	RP11-1109M24.5-002	NA	NA	NA	inter
CUST_11145_PI429285431	2.85312	A	2.9760191	A	0.918340387450572	0	lncRNA	12703-1_{1..376}	lnc-PPDPF-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPDPF-1:6	chr20	 62136257	 62136632	+	lnc-PPDPF-1	lnc-PPDPF-1:6	XLOC_013614	linc-PPDPF-1	EEF1A2	NA	chr20:62126257-62130505	inter
CUST_41265_PI429285431	3.0295277	P	3.544944	P	0.699591031659849	0	lncRNA	42230-1_{1..80}	ENST00000583019 ncrna:miRNA chromosome:GRCh37:HG736_PATCH:57023478:57023557:-1 gene:ENSG00000266788 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583019 ncrna:miRNA chromosome:GRCh37:HG736_PATCH:57023478:57023557:-1 gene:ENSG00000266788 gene_biotype:miRNA transcript_biotype:miRNA	chrHG736_PATCH	 57023478	 57023557	-	ENSG00000266788	ENST00000583019	NA	NA	NA	NA	NA	Unknown
CUST_29827_PI429285431	13.823505	P	13.125691	P	1.6220451748895	0	lncRNA	31590-1_{1..213}	n333661|D28463|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000101292|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000101292|-1.1014900|-0.0425781	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333661|D28463|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000101292|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000101292|-1.1014900|-0.0425781	chr11	 61734892	 61735104	-	NA	NA	NA	NA	FTH1	NA	chr11:61731757-61735132	inner
CUST_20187_PI429285431	0.91632485	A	0.91930413	A	0.997937051277622	0	lncRNA	21830-1_{1..960}	lnc-ANKRD40-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD40-1:2	chr17	 48843920	 48844879	-	lnc-ANKRD40-1	lnc-ANKRD40-1:2	ENSG00000167117.4	LINC00483	NA	NA	NA	inter
CUST_6048_PI429285431	0.96022403	A	0.9196146	A	1.0285482190593	0	lncRNA	5974-1_{1..584}	"transcript_id ""ENST00000582086.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582086.1"" | genecode_v17"	chr18	  2034824	  2035407	-	ENSG00000263745.1	ENST00000582086.1	RP11-161I6.2	RP11-161I6.2-004	NA	NA	NA	inter
CUST_14562_PI429285431	0.9187944	A	1.0243216	A	0.929465228676531	0	lncRNA	16232-1_{1..3000}	lnc-TOMM20-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TOMM20-2:3	chr1	235099514	235102513	-	lnc-TOMM20-2	lnc-TOMM20-2:3	XLOC_001265	linc-IRF2BP2-1	NA	"hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00"	NA	inter
CUST_8183_PI429285431	0.90993756	A	0.912727	A	0.998068375521117	0	lncRNA	9782-2_{3001..5133}	lnc-DUSP6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-DUSP6-2:2	chr12	 89416330	 89418462	-	lnc-DUSP6-2	lnc-DUSP6-2:2	ENSG00000246363	ENST00000500381	NA	NA	NA	inter
LNCA_21_P0007520	0.9180616	A	0.9066199	A	1.00796231405071	0	lncRNA	TCONS_00020294	NA	NA	NA	NA	XLOC_009639	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009639), lincRNA [TCONS_00020294]"	chr12:8179212-8179271	hs|12p13.31	Agilent_HUMAN_G3V2	TCONS_00020294	TCONS_00020294	chr12	  8179212	  8179271	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22192_PI429285431	0.89415574	A	0.8914281	A	1.00189244439251	0	lncRNA	23792-1_{1..1570}	lnc-NBPF6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-NBPF6-1:1	chr1	108879824	108881393	+	lnc-NBPF6-1	lnc-NBPF6-1:1	ENSG00000188740.6	RP11-483I13.4	NA	NA	NA	inter
CUST_17067_PI429285431	0.89953876	A	0.8959802	A	1.00246965040576	0	lncRNA	18776-1_{1..2827}	lnc-CSMD1-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CSMD1-9:1	chr8	  1743563	  1746389	-	lnc-CSMD1-9	lnc-CSMD1-9:1	XLOC_006976	linc-ERICH1-4	CLN8	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.76;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-19.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.52;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10chr8:1733563-1734736"	NA	inter
CUST_3590_PI429285431	1.5201488	A	2.1133327	A	0.662878377811656	0	lncRNA	3560-1_{1..832}	"transcript_id ""ENST00000413993.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413993.1"" | genecode_v17"	chr10	  3529086	  3529917	-	ENSG00000233321.1	ENST00000413993.1	RP11-482E14.1	RP11-482E14.1-001	NA	NA	NA	inter
CUST_1681_PI429285431	4.1470723	P	4.155084	P	0.994462103729852	0	lncRNA	1665-1_{1..2547}	"transcript_id ""ENST00000508601.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000508601.1"" | genecode_v17"	chr4	  6202460	  6205006	+	ENSG00000249896.1	ENST00000508601.1	RP11-586D19.1	RP11-586D19.1-001	JAKMIP1	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30chr4:6192460-6202318"	NA	inter
CUST_43244_PI429285431	0.91852033	A	0.90806794	A	1.00727135349251	0	lncRNA	48061-1_{1..239}	ENST00000605049 havana:sense_intronic chromosome:GRCh37:8:53635463:53635701:1 gene:ENSG00000271555 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000605049 havana:sense_intronic chromosome:GRCh37:8:53635463:53635701:1 gene:ENSG00000271555 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr8	 53635463	 53635701	+	ENSG00000271555	ENST00000605049	NA	NA	RB1CC1	NA	chr8:53625463-53627026	inter
CUST_7163_PI429285431	0.9138823	A	0.90657926	A	1.00507491556692	0	lncRNA	7248-1_{1..260}	"transcript_id ""ENST00000516675.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516675.1"" | genecode_v17"	chr1	224294984	224295243	-	ENSG00000252484.1	ENST00000516675.1	RN7SKP49	RN7SKP49-201	FBXO28	NA	chr1:224301791-224305243	inter
CUST_595_PI429285431	0.905629	A	0.90055674	A	1.00352201047232	0	lncRNA	587-1_{1..574}	"transcript_id ""ENST00000602345.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602345.1"" | genecode_v17"	chr1	228571815	228572388	-	ENSG00000270104.1	ENST00000602345.1	RP11-245P10.6	RP11-245P10.6-001	TRIM11	NA	chr1:228581377-228582717	inter
LNCA_21_P0014741	0.92639005	A	0.91456455	A	1.00823049782299	0	lncRNA	XR_112738	XR_112738	XR_112738	NA	NA	LOC100506646	uncharacterized LOC100506646	NA	THC2536887	NA	"PREDICTED: Homo sapiens hypothetical LOC100506646 (LOC100506646), miscRNA [XR_112738]"	chr5:68732349-68732290	hs|5q13.2	Agilent_HUMAN_G3V2	XR_112738	XR_112738	chr5	 68732290	 68732349	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1925_PI429285431	0.899083	A	0.89409596	A	1.00346273417516	0	lncRNA	1916-1_{1..440}	"transcript_id ""ENST00000514766.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514766.1"" | genecode_v17"	chr4	143435599	143436038	+	ENSG00000251248.1	ENST00000514766.1	RP11-223C24.2	RP11-223C24.2-001	INPP4B	NA	chr4:143425599-143450136	inner
CUST_51206_PI429285431	4.0517025	P	4.5876327	P	0.689713829615415	0	lncRNA	54824-1_{1..1127}	hg19_lincRNAsTranscripts_TCONS_l2_00008524 range=chr15:30799598-30806927 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008524 range=chr15:30799598-30806927 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 30799598	 30800724	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001398	4.3108416	P	4.249022	P	1.04378140091914	0	lncRNA	TCONS_00001219	NA	NA	NA	NA	XLOC_000492	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000492), lincRNA [TCONS_00001219]"	chr1:184634736-184634795	hs|1q25.3	Agilent_HUMAN_G3V2	TCONS_00001219	TCONS_00001219	chr1	184634736	184634795	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44557_PI429285431	1.8639069	A	1.9595398	A	0.935861601573637	0	lncRNA	49141-1_{1..2518}	"gi|410170488|ref|XR_132511.3| PREDICTED: Homo sapiens putative POM121-like protein 1-like (LOC100506903), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170488|ref|XR_132511.3| PREDICTED: Homo sapiens putative POM121-like protein 1-like (LOC100506903), misc_RNA"	NA	NA	NA	NA	NA	XR_132511.3	NA	NA	NA	NA	NA	Unknown
CUST_17517_PI429285431	1.1607797	A	1.0124036	A	1.10832124141366	0	lncRNA	19242-1_{1..364}	lnc-RP11-210M15.2.1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-210M15.2.1-3:5	chr15	 80633898	 80634261	-	lnc-RP11-210M15.2.1-3	lnc-RP11-210M15.2.1-3:5	XLOC_011544	linc-BCL2A1-2	NA	NA	NA	inter
CUST_50358_PI429285431	4.388182	P	4.879194	P	0.711525812287356	0	lncRNA	54071-1_{1..695}	hg19_lincRNAsTranscripts_TCONS_l2_00029139 range=chr9:139442073-139443732 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029139 range=chr9:139442073-139443732 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	139442073	139442767	+	NA	NA	NA	NA	NOTCH1	NA	chr9:139432073-139440238	inter
CUST_39756_PI429285431	3.6907527	P	3.7026186	M	0.991808916121036	0	lncRNA	40679-1_{1..3000}	n405913|NR_003149|lncRNA|Homosapiens||RefGeneNoncode|NR_003149||40.8024000|-0.2615927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405913|NR_003149|lncRNA|Homosapiens||RefGeneNoncode|NR_003149||40.8024000|-0.2615927	chr5	 89854616	 89857615	+	NA	NA	NA	NA	GPR98	NA	chr5:89854617-90460033	inner
CUST_39381_PI429285431	0.91500956	A	1.68842	A	0.585032857944201	0	lncRNA	40344-1_{1..757}	n386521|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010msw.1||-0.9971400|-0.2230451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386521|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010msw.1||-0.9971400|-0.2230451	chr9	102133135	102133891	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2188_PI429285431	0.9208849	A	0.91563576	A	1.00364505370037	0	lncRNA	2180-1_{1..567}	"transcript_id ""ENST00000510180.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510180.1"" | genecode_v17"	chr5	 70741443	 70742009	+	ENSG00000249981.1	ENST00000510180.1	RP11-136K7.1	RP11-136K7.1-001	BDP1	NA	chr5:70751442-70752396	inter
CUST_34187_PI429285431	3.3217652	P	3.5293722	P	0.86597243020756	0	lncRNA	35702-2_{3001..3149}	n341036|AK055468|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3502|NULL|-0.3182690|-0.3391661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341036|AK055468|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3502|NULL|-0.3182690|-0.3391661	chr11	 59573201	 59573349	+	NA	NA	NA	NA	STX3	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-34.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr11:59560201-59573355"	NA	inner
LNCA_21_P0002298	1.5332075	A	1.7103631	A	0.884445039516133	0	lncRNA	ENST00000449714	NA	NA	NA	NA	XLOC_001703	NA	ENST00000449714	NA	NA	"BROAD Institute lincRNA (XLOC_001703), lincRNA [TCONS_00003900]"	chr2:150704681-150704740	hs|2q23.3	Agilent_HUMAN_G3V2	ENST00000449714	ENST00000449714	chr2	150704681	150704740	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37723_PI429285431	5.933112	P	5.265431	P	1.58851751797295	0	lncRNA	38820-1_{1..316}	n346226|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1776|NULL|-1.3340900|-0.2021092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346226|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1776|NULL|-1.3340900|-0.2021092	chr9	 67331281	 67331596	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20421_PI429285431	1.5129311	A	1.0875454	A	1.34293148331735	0	lncRNA	22064-1_{1..413}	lnc-NSUN6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NSUN6-3:1	chr10	 18821966	 18822378	-	lnc-NSUN6-3	lnc-NSUN6-3:1	ENSG00000225527.1	RP11-383B4.4	CACNB2	NA	chr10:18811966-18830688	inner
LNCA_33_P3741059	1.1324182	A	0.91554016	A	1.16221585401828	0	lncRNA	XR_110492	XR_110492	XR_110492	100506459	Hs.196026	LOC100506459	uncharacterized LOC100506459	NA	THC2636481	NA	"PREDICTED: Homo sapiens hypothetical LOC100506459 (LOC100506459), miscRNA [XR_110492]"	chr1:117035719-117035660	hs|1p13.1	Agilent_HUMAN_G3V2	XR_110492	XR_110492	chr1	117035660	117035719	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34561_PI429285431	0.8912271	A	0.8961501	A	0.996593451925927	0	lncRNA	36020-1_{1..1763}	n341441|BC035189|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3911|NULL|-1.2655600|-0.2624594	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341441|BC035189|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3911|NULL|-1.2655600|-0.2624594	chr13	112240549	112242311	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31731_PI429285431	0.9240324	A	0.94793826	A	0.983566252458606	0	lncRNA	33472-1_{1..2404}	n338266|AK057642|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|659|NULL|-1.3072500|-0.4457934	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338266|AK057642|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|659|NULL|-1.3072500|-0.4457934	chr14	 37727928	 37730331	+	NA	NA	NA	NA	MIPOL1	"hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20chr14:37717928-37740334"	NA	inner
CUST_48107_PI429285431	0.89756614	A	0.89825827	A	0.99952036710257	0	lncRNA	51980-1_{1..520}	"gi|310115507|ref|XR_113160.1| PREDICTED: Homo sapiens uncharacterized LOC100506861 (LOC100506861), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310115507|ref|XR_113160.1| PREDICTED: Homo sapiens uncharacterized LOC100506861 (LOC100506861), misc_RNA"	NA	NA	NA	NA	NA	XR_113160.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008593	0.9168278	A	2.1743202	A	0.418270338937873	0	lncRNA	TCONS_00023310	NA	NA	NA	NA	XLOC_011179	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011179), lincRNA [TCONS_00023310]"	chr15:24643323-24643382	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023310	TCONS_00023310	chr15	 24643323	 24643382	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41545_PI429285431	7.011967	P	7.2424526	P	0.852347949747447	0	lncRNA	42827-1_{1..103}	ENST00000577717 ncrna:miRNA chromosome:GRCh37:2:75317939:75318041:1 gene:ENSG00000263909 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577717 ncrna:miRNA chromosome:GRCh37:2:75317939:75318041:1 gene:ENSG00000263909 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 75317939	 75318041	+	ENSG00000263909	ENST00000577717	NA	NA	TACR1	NA	chr2:75307939-75328041	inner
CUST_29908_PI429285431	6.854178	P	7.0279884	P	0.886498195757922	0	lncRNA	31671-1_{1..395}	n334024|M24404|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194928|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194928|0.8252790|-0.1674404	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334024|M24404|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194928|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194928|0.8252790|-0.1674404	chr19	  1612196	  1612590	-	NA	NA	NA	NA	TCF3	NA	chr19:1609292-1629134	inner
CUST_2205_PI429285431	1.0333536	A	0.90843594	A	1.0904454950878	0	lncRNA	2197-1_{1..502}	"transcript_id ""ENST00000506612.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506612.1"" | genecode_v17"	chr5	 73623820	 73624321	-	ENSG00000250446.1	ENST00000506612.1	CTD-2275D24.3	CTD-2275D24.3-001	NA	NA	NA	inter
CUST_1684_PI429285431	0.9156987	A	0.9163091	A	0.999576992453917	0	lncRNA	1667-1_{1..497}	"transcript_id ""ENST00000602577.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602577.1"" | genecode_v17"	chr4	  6241168	  6241664	+	ENSG00000269908.1	ENST00000602577.1	RP11-1406H17.1	RP11-1406H17.1-001	NA	NA	NA	inter
CUST_41711_PI429285431	0.9014785	A	1.0362451	A	0.910817174178394	0	lncRNA	43216-1_{1..82}	ENST00000385269 ncrna:miRNA chromosome:GRCh37:14:101522556:101522637:1 gene:ENSG00000208004 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385269 ncrna:miRNA chromosome:GRCh37:14:101522556:101522637:1 gene:ENSG00000208004 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101522556	101522637	+	ENSG00000208004	ENST00000385269	NA	NA	NA	NA	NA	inter
CUST_20038_PI429285431	1.3723079	A	1.0611808	A	1.24067659527643	0	lncRNA	21689-1_{1..655}	lnc-HMGB4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMGB4-1:2	chr1	 34339149	 34339803	+	lnc-HMGB4-1	lnc-HMGB4-1:2	ENSG00000231163.1	AL121980.1	CSMD2	NA	chr1:34329149-34349368	inner
CUST_27748_PI429285431	1.8201785	A	1.1328017	A	1.61035280881947	0	lncRNA	29330-1_{1..277}	n324965|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079621|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079621|-1.1370800|-0.1024349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324965|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079621|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079621|-1.1370800|-0.1024349	chr20	 46533629	 46533905	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011143	2.8310664	A	1.7635338	A	2.09584583520105	0	lncRNA	TCONS_l2_00006853	NA	NA	NA	NA	XLOC_l2_003732	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003732), lincRNA [TCONS_l2_00006853]"	chr13:52028432-52042429	hs|13q14.3	Agilent_HUMAN_G3V2	TCONS_l2_00006853	TCONS_l2_00006853	chr13	 52028432	 52042429	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40703_PI429285431	0.89671886	A	0.9007402	A	0.997216500654999	0	lncRNA	41442-1_{1..1333}	n410265|NR_037175_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037175_2||-1.1656200|-0.3745418	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410265|NR_037175_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037175_2||-1.1656200|-0.3745418	chr6	  4043969	  4045301	+	NA	NA	NA	NA	PRPF4B	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30chr6:4033969-4056384"	NA	inner
CUST_19215_PI429285431	8.269009	P	8.347829	P	0.946831756744785	0	lncRNA	20885-1_{1..372}	lnc-RPRML-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPRML-3:6	chr17	 45177201	 45177572	-	lnc-RPRML-3	lnc-RPRML-3:6	ENSG00000262879.1	RP11-156P1.3	NA	NA	NA	inter
CUST_6883_PI429285431	0.9056927	A	0.97806126	A	0.951075277588285	0	lncRNA	6834-1_{1..788}	"transcript_id ""ENST00000420273.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420273.1"" | genecode_v17"	chr21	 44201184	 44201971	-	ENSG00000233754.1	ENST00000420273.1	AP001628.7	AP001628.7-001	PDE9A	NA	chr21:44191184-44195619	inter
CUST_25904_PI429285431	1.610419	A	1.1665084	A	1.36028655643024	0	lncRNA	27423-1_{1..258}	lnc-SYNE1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SYNE1-1:1	chr6	152135261	152135518	-	lnc-SYNE1-1	lnc-SYNE1-1:1	ENSG00000233823.1	RP3-443C4.2	ESR1	NA	chr6:152125261-152145314	inner
CUST_35148_PI429285431	1.7102381	A	1.6119268	A	1.07051966672644	0	lncRNA	36550-1_{1..1701}	n342120|CR626562|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4603|NULL|-1.1805000|-0.2961046	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342120|CR626562|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4603|NULL|-1.1805000|-0.2961046	chr6	127664771	127666471	+	NA	NA	NA	NA	ECHDC1	NA	chr6:127654771-127664754	inter
LNCA_21_P0003901	0.92435354	A	0.920919	A	1.00238347769505	0	lncRNA	ENST00000505454	NA	NA	NA	NA	XLOC_004091	NA	ENST00000505454	NA	NA	"BROAD Institute lincRNA (XLOC_004091), lincRNA [TCONS_00009122]"	chr4:138569575-138566646	hs|4q28.3	Agilent_HUMAN_G3V2	ENST00000505454	ENST00000505454	chr4	138566646	138569575	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6516_PI429285431	7.600259	P	7.5915756	P	1.00603702404671	0	lncRNA	6458-1_{1..173}	"transcript_id ""ENST00000599274.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599274.1"" | genecode_v17"	chr19	 39832413	 39832585	-	ENSG00000269246.1	ENST00000599274.1	CTC-246B18.10	CTC-246B18.10-001	SAMD4B	NA	chr19:39833108-39842585	inter
LNCA_21_P0006198	0.9240688	A	0.9199679	A	1.00284657108405	0	lncRNA	TCONS_00016111	NA	NA	NA	NA	XLOC_007499	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007499), lincRNA [TCONS_00016111]"	chr9:107881631-107881690	hs|9q31.1	Agilent_HUMAN_G3V2	TCONS_00016111	TCONS_00016111	chr9	107881631	107881690	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14319_PI429285431	0.90866303	A	0.91311896	A	0.996916149549139	0	lncRNA	15977-1_{1..300}	lnc-CDH9-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH9-2:5	chr5	 27410327	 27410626	-	lnc-CDH9-2	lnc-CDH9-2:5	XLOC_004761	linc-CDH9-3	NA	NA	NA	inter
CUST_43464_PI429285431	2.4055088	A	2.3432665	A	1.0440872666962	0	lncRNA	48268-1_{1..898}	"gi|378925604|ref|NR_046395.1| Homo sapiens cytidine monophosphate (UMP-CMP) kinase 1, cytosolic (CMPK1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378925604|ref|NR_046395.1| Homo sapiens cytidine monophosphate (UMP-CMP) kinase 1, cytosolic (CMPK1), transcript variant 4, non-coding RNA"	Chr1	 47799469	 47800366	+	51727	NR_046395.1	NA	NA	NA	NA	NA	inter
CUST_23456_PI429285431	1.0320427	A	1.3376993	A	0.8090739066697	0	lncRNA	25023-2_{3001..3445}	lnc-XPC-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XPC-5:3	chr3	 14584776	 14585220	-	lnc-XPC-5	lnc-XPC-5:3	ENSG00000144596.7	GRIP2	GRIP2	NA	chr3:14571776-14583588	inner
CUST_22871_PI429285431	4.761032	P	5.245834	P	0.714595136422514	0	lncRNA	24448-1_{1..389}	lnc-NPC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPC1-1:1	chr18	 20840199	 20840587	-	lnc-NPC1-1	lnc-NPC1-1:1	ENSG00000266495.1	RP11-17J14.2	CABLES1	"hg19_refFlat_CABLES1:range=chr18:20715727-208373315'pad=0,hg19_refFlat_CABLES1:range=chr18:20715727-208373315'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_CABLES1:range=chr18:20774476-208373315'pad=0,hg19_refFlat_CABLES1:range=chr18:20774476-208373315'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_CABLES1:range=chr18:20735867-208373315'pad=0,hg19_refFlat_CABLES1:range=chr18:20735867-208373315'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40chr18:20830199-20840434"	NA	inner
CUST_35231_PI429285431	6.9394507	P	7.230941	P	0.817057604220686	0	lncRNA	36632-1_{1..421}	n342224|BC038781|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4714|NULL|0.1647770|-0.1695154	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342224|BC038781|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4714|NULL|0.1647770|-0.1695154	chr1	 17028040	 17028460	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51244_PI429285431	1.4656667	A	0.9028311	A	1.47716972548399	0	lncRNA	54857-1_{1..2156}	hg19_lincRNAsTranscripts_TCONS_l2_00008940 range=chr15:23190054-23198611 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008940 range=chr15:23190054-23198611 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 23190054	 23192209	-	NA	NA	NA	NA	NA	"hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00"	NA	inter
CUST_39_PI429201921	7.0898824	P	6.8898335	P	1.14873729066947	0	lncRNA	40-1_{1..1289}	TC06003864.hg.1	TCONS_l2_00025482-XLOC_l2_013125 // Broad TUCP // linc-SGK1-3 chr6:-:135027197-135028487 // chr6 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6:-:135027197-135028487	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00025482-XLOC_l2_013125	linc-SGK1-3	chr6	135027197	135028487	-	NA	NA	NA	NA	PVRL1	NA	chr11:119570630-119594635	Unknown
CUST_12822_PI429285431	1.030163	A	1.3027987	A	0.827805821848898	0	lncRNA	14449-1_{1..409}	lnc-VRK1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VRK1-2:2	chr14	 97256709	 97257117	+	lnc-VRK1-2	lnc-VRK1-2:2	XLOC_010921	linc-VRK1-1	VRK1	NA	chr14:97263684-97267011	inter
CUST_12845_PI429285431	3.87149	P	4.6073685	P	0.600452280132602	0	lncRNA	14471-1_{1..449}	lnc-DAOA-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DAOA-6:1	chr13	105020471	105020919	+	lnc-DAOA-6	lnc-DAOA-6:1	XLOC_010485	linc-DAOA-2	NA	NA	NA	inter
CUST_26806_PI429285431	2.8631673	A	2.184578	A	1.600573912197	0	lncRNA	28318-1_{1..451}	n323874|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056582|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056582|-1.2987100|-0.4157318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323874|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056582|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056582|-1.2987100|-0.4157318	chrX	 51116535	 51116985	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37519_PI429285431	0.9111413	A	0.89956975	A	1.0080530399443	0	lncRNA	38622-1_{1..999}	n345992|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1541|NULL|-1.2987200|-0.3163117	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345992|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1541|NULL|-1.2987200|-0.3163117	chrX	100753695	100754693	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30529_PI429285431	9.693766	P	9.098833	P	1.51040243954412	0	lncRNA	32309-1_{1..421}	n335687|CR617830|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000297025|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000297025|-1.4578400|-0.4205336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335687|CR617830|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000297025|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000297025|-1.4578400|-0.4205336	chr12	 49047220	 49047640	-	NA	NA	NA	NA	C12orf41	NA	chr12:49046994-49057641	inner
CUST_47465_PI429285431	1.4733092	A	2.4791007	A	0.497996842441671	0	lncRNA	51491-1_{1..3000}	"gi|225903433|ref|NR_027426.1| Homo sapiens uncharacterized LOC648691 (LOC648691), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225903433|ref|NR_027426.1| Homo sapiens uncharacterized LOC648691 (LOC648691), non-coding RNA"	Chr22	 22901756	 22904755	+	648691	NR_027426.1	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30"	NA	inter
CUST_34428_PI429285431	5.4020433	P	5.6396527	P	0.848149564352839	0	lncRNA	35908-1_{1..2290}	n341304|BC040208|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3773|NULL|-1.1669400|-0.2245957	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341304|BC040208|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3773|NULL|-1.1669400|-0.2245957	chr7	115849287	115851576	-	NA	NA	NA	NA	TES	NA	chr7:115850547-115861565	inner
CUST_40328_PI429285431	0.8903838	A	0.8889985	A	1.00096067794496	0	lncRNA	41132-1_{1..603}	n408370|NR_029462_2|lncRNA|Homosapiens||RefGeneNoncode|NR_029462_2||-0.4639150|-0.3824374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408370|NR_029462_2|lncRNA|Homosapiens||RefGeneNoncode|NR_029462_2||-0.4639150|-0.3824374	chr6	  2847595	  2848197	+	NA	NA	NA	NA	SERPINB1	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00chr6:2837595-2842081"	NA	inter
CUST_21925_PI429285431	0.91030806	A	0.9154028	A	0.996474823409331	0	lncRNA	23533-1_{1..568}	lnc-EMILIN2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EMILIN2-2:1	chr18	  2985072	  2985639	+	lnc-EMILIN2-2	lnc-EMILIN2-2:1	ENSG00000266397.1	RP11-737O24.1	LPIN2	NA	chr18:2975072-2995408	inner
CUST_33609_PI429285431	3.287416	A	3.239611	A	1.03369100930348	0	lncRNA	35174-1_{1..236}	n340366|U10515|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2827|NULL|-1.2902500|-0.3987618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340366|U10515|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2827|NULL|-1.2902500|-0.3987618	chr5	 10064358	 10064593	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46197_PI429285431	5.594234	P	3.432003	P	4.47606504086883	0	lncRNA	50442-1_{1..3000}	"gi|223468627|ref|NR_026745.1| Homo sapiens component of oligomeric golgi complex 6 (COG6), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223468627|ref|NR_026745.1| Homo sapiens component of oligomeric golgi complex 6 (COG6), transcript variant 3, non-coding RNA"	Chr13	 40229764	 40232763	+	57511	NR_026745.1	NA	NA	NA	NA	NA	inter
CUST_7484_PI429285431	4.4182324	P	4.5114355	P	0.937439116183121	0	lncRNA	9124-1_{1..753}	lnc-SLC30A7-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC30A7-2:6	chr1	101549017	101549769	+	lnc-SLC30A7-2	lnc-SLC30A7-2:6	ENSG00000233184	RP11-421L21.3	NA	NA	NA	inter
CUST_26693_PI429285431	0.9049174	A	0.90854645	A	0.997487695357294	0	lncRNA	28202-1_{1..3000}	n1114|AF222983|DISC2RNA|Homosapiens|DISC2|NONCODEv2.0|n1114|NULL|-1.5906100|-0.3279822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n1114|AF222983|DISC2RNA|Homosapiens|DISC2|NONCODEv2.0|n1114|NULL|-1.5906100|-0.3279822	chr1	231948705	231951704	+	NA	NA	NA	NA	DISC1	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-18.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60chr1:231938705-231966006"	NA	inter
LNCA_21_P0004490	0.91183263	A	0.9015371	A	1.00716184178638	0	lncRNA	TCONS_00010634	NA	NA	NA	NA	XLOC_004308	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004308), lincRNA [TCONS_00010634]"	chr5:17404781-17404840	hs|5p15.1	Agilent_HUMAN_G3V2	TCONS_00010634	TCONS_00010634	chr5	 17404781	 17404840	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21893_PI429285431	5.730432	P	6.3298316	P	0.660028579406075	0	lncRNA	23502-1_{1..548}	lnc-SMUG1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMUG1-4:1	chr12	 54393493	 54394040	-	lnc-SMUG1-4	lnc-SMUG1-4:1	ENSG00000250451.1	HOXC-AS1	HOXC9	NA	chr12:54393877-54397121	inter
CUST_50185_PI429285431	7.6332417	P	7.471355	P	1.11874923820784	0	lncRNA	53910-1_{1..2062}	hg19_lincRNAsTranscripts_TCONS_l2_00028699 range=chr9:35406774-35471959 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028699 range=chr9:35406774-35471959 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 35406774	 35408835	+	NA	NA	NA	NA	UNC13B	NA	chr9:35396774-35405332	inter
CUST_31060_PI429285431	0.9167636	A	0.9206189	A	0.997331277064171	0	lncRNA	32850-1_{1..582}	n337286|BC128191|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389718|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389718|1.5758600|-0.0965777	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337286|BC128191|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389718|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389718|1.5758600|-0.0965777	chr12	 11461161	 11461742	-	NA	NA	NA	NA	PRB4	NA	chr12:11460015-11463366	inner
CUST_40338_PI429285431	3.7026186	P	3.3358707	P	1.28944291061392	0	lncRNA	41143-1_{1..2570}	n408907|NR_030774|lncRNA|Homosapiens||RefGeneNoncode|NR_030774||4.0203200|-0.3222767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408907|NR_030774|lncRNA|Homosapiens||RefGeneNoncode|NR_030774||4.0203200|-0.3222767	chrX	 74493893	 74496462	+	NA	NA	NA	NA	UPRT	NA	chrX:74493894-74524732	inner
CUST_31106_PI429285431	5.2246513	P	5.143796	P	1.05764487821251	0	lncRNA	32899-1_{1..369}	n337394|DQ656041|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393154|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393154|0.3579270|-0.2504547	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337394|DQ656041|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393154|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393154|0.3579270|-0.2504547	chr1	151170425	151170793	+	NA	NA	NA	NA	PIP5K1A	NA	chr1:151171021-151214237	inner
CUST_15485_PI429285431	0.9116621	A	1.0518584	A	0.907395682312825	0	lncRNA	17174-1_{1..312}	lnc-ETNK2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ETNK2-1:7	chr1	204010220	204010531	-	lnc-ETNK2-1	lnc-ETNK2-1:7	XLOC_001164	linc-FMOD-1	NA	NA	NA	inter
CUST_42880_PI429285431	10.167021	P	10.081796	P	1.06085317712982	0	lncRNA	45957-1_{1..133}	ENST00000364518 ncrna:snoRNA chromosome:GRCh37:19:33099243:33099375:-1 gene:ENSG00000201388 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364518 ncrna:snoRNA chromosome:GRCh37:19:33099243:33099375:-1 gene:ENSG00000201388 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	 33099243	 33099375	-	ENSG00000201388	ENST00000364518	NA	NA	ANKRD27	NA	chr19:33089243-33109375	inner
CUST_46836_PI429285431	8.63713	P	8.56221	P	1.05330262683572	0	lncRNA	50972-1_{1..1371}	"gi|111120332|ref|NR_003108.1| Homo sapiens neighbor of BRCA1 gene 2 (non-protein coding) (NBR2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|111120332|ref|NR_003108.1| Homo sapiens neighbor of BRCA1 gene 2 (non-protein coding) (NBR2), non-coding RNA"	Chr17	 41277600	 41278970	+	10230	NR_003108.1	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.20"	NA	inter
CUST_22382_PI429285431	10.641154	P	10.48975	P	1.11064980697349	0	lncRNA	23972-2_{3001..3312}	lnc-HMBS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMBS-1:1	chr11	118955169	118955480	+	lnc-HMBS-1	lnc-HMBS-1:1	ENSG00000160695.8	VPS11	HMBS	NA	chr11:118955587-118962688	inner
CUST_23580_PI429285431	0.90461457	A	0.90683734	A	0.99846047952081	0	lncRNA	25147-1_{1..351}	lnc-TECRL-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TECRL-4:4	chr4	 63002384	 63002734	-	lnc-TECRL-4	lnc-TECRL-4:4	ENSG00000248692.1	RP11-84A1.3	NA	NA	NA	inter
CUST_33174_PI429285431	4.8886976	P	4.9929075	P	0.930314294947234	0	lncRNA	34767-1_{1..2042}	n339864|AK054755|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2312|NULL|-0.6928030|-0.1945998	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339864|AK054755|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2312|NULL|-0.6928030|-0.1945998	chr18	 44247784	 44249825	-	NA	NA	NA	NA	ST8SIA5	NA	chr18:44259081-44266829	inter
CUST_48894_PI429285431	0.90681267	A	0.91207147	A	0.996361513000779	0	lncRNA	52733-1_{1..591}	hg19_lincRNAsTranscripts_TCONS_l2_00020152 range=chr3:95387164-95401565 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020152 range=chr3:95387164-95401565 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 95387164	 95387754	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-26.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.52;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40"	NA	inter
CUST_18347_PI429285431	4.639498	P	4.4867	P	1.11172348784303	0	lncRNA	20075-1_{1..2381}	lnc-MYO10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYO10-1:1	chr5	 17216508	 17218888	-	lnc-MYO10-1	lnc-MYO10-1:1	ENSG00000215196	AC091878.1	BASP1	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50chr5:17217750-17227508"	NA	inter
LNCA_21_P0007473	2.4944785	A	1.278125	A	2.3235867368198	0	lncRNA	TCONS_00020154	NA	NA	NA	NA	XLOC_009604	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009604), lincRNA [TCONS_00020154]"	chr11:130270964-130270905	hs|11q24.3	Agilent_HUMAN_G3V2	TCONS_00020154	TCONS_00020154	chr11	130270905	130270964	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35625_PI429285431	5.0303473	P	5.300612	P	0.829167399490808	0	lncRNA	37040-1_{1..2209}	n342769|AK127603|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5272|NULL|2.3977900|-0.1786423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342769|AK127603|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5272|NULL|2.3977900|-0.1786423	chr11	 66202550	 66204758	-	NA	NA	NA	NA	NPAS4	NA	chr11:66192550-66194177	inner
CUST_15684_PI429285431	0.8988309	A	0.8933113	A	1.00383322325728	0	lncRNA	17371-1_{1..1322}	lnc-CHD9-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD9-5:4	chr16	 52313928	 52315249	+	lnc-CHD9-5	lnc-CHD9-5:4	XLOC_011724	linc-CHD9-4	NA	NA	NA	inter
LNCA_21_P0008934	2.3159394	A	3.1657043	P	0.554875150512158	0	lncRNA	TCONS_00024393	NA	NA	NA	NA	XLOC_011718	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011718), lincRNA [TCONS_00024393]"	chr16:50916034-50916093	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00024393	TCONS_00024393	chr16	 50916034	 50916093	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7816_PI429285431	1.5141035	A	2.3452322	A	0.562089316765213	0	lncRNA	9440-1_{1..1480}	lnc-METTL15-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-METTL15-4:5	chr11	 27698529	 27700008	+	lnc-METTL15-4	lnc-METTL15-4:5	ENSG00000245573	AC104563.1	BDNF	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-21.80;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BDNF:range=chr11:27679368-277225835'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277225835'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BDNF:range=chr11:27679368-277209525'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277209525'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BDNF:range=chr11:27679368-277429615'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277429615'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BDNF:range=chr11:27679368-276958315'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-276958315'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BDNF:range=chr11:27679368-276801115'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-276801115'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.32chr11:27688529-27709354"	NA	inter
CUST_25048_PI429285431	1.9757669	A	1.9406163	A	1.0246637800174	0	lncRNA	26587-1_{1..802}	lnc-COMMD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COMMD1-1:1	chr2	 62112850	 62113651	+	lnc-COMMD1-1	lnc-COMMD1-1:1	ENSG00000236498.1	AC107081.5	CCT4	NA	chr2:62102850-62115791	inner
CUST_14355_PI429285431	1.2642184	A	0.89114106	A	1.29511242538421	0	lncRNA	16013-1_{1..1415}	lnc-FOXA2-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXA2-7:3	chr20	 22393832	 22395246	-	lnc-FOXA2-7	lnc-FOXA2-7:3	XLOC_013680	linc-NKX2-2-2	NA	NA	NA	inter
LNCA_21_P0001601	4.8530126	P	5.4609485	P	0.656134779198378	0	lncRNA	TCONS_00001757	NA	NA	NA	NA	XLOC_001125	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001125), lincRNA [TCONS_00001757]"	chr1:184638238-184638179	hs|1q25.3	Agilent_HUMAN_G3V2	TCONS_00001757	TCONS_00001757	chr1	184638179	184638238	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34401_PI429285431	2.8938763	A	3.4264672	A	0.69131210843572	0	lncRNA	35883-1_{1..1742}	n341271|AF131841|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3739|NULL|-0.9269610|-0.3388091	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341271|AF131841|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3739|NULL|-0.9269610|-0.3388091	chr7	 88425569	 88427310	+	NA	NA	NA	NA	ZNF804B	NA	chr7:88415569-88437301	inner
CUST_5596_PI429285431	6.8363037	P	5.540389	P	2.45532619126134	0	lncRNA	5525-1_{1..1903}	"transcript_id ""ENST00000563086.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563086.1"" | genecode_v17"	chr16	 66923094	 66924996	+	ENSG00000261088.1	ENST00000563086.1	RP11-61A14.3	RP11-61A14.3-002	PDP2	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-28.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-47.22;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10chr16:66914383-66925004"	NA	inner
CUST_12483_PI429285431	0.90828425	A	0.9134192	A	0.996447050600014	0	lncRNA	14095-1_{1..3000}	lnc-LPHN3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LPHN3-2:2	chr4	 63010854	 63013853	+	lnc-LPHN3-2	lnc-LPHN3-2:2	XLOC_003555	linc-STAP1-9	NA	NA	NA	inter
CUST_45493_PI429285431	4.2533207	P	4.7541447	P	0.706703030144279	0	lncRNA	49906-1_{1..1554}	"gi|402478655|ref|NR_073127.1| Homo sapiens aldo-keto reductase family 1, member E2 (AKR1E2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402478655|ref|NR_073127.1| Homo sapiens aldo-keto reductase family 1, member E2 (AKR1E2), transcript variant 6, non-coding RNA"	Chr10	  4868369	  4869922	+	83592	NR_073127.1	NA	NA	NA	NA	NA	inter
CUST_35156_PI429285431	0.9144104	A	0.92142504	A	0.995149623314166	0	lncRNA	36558-1_{1..1895}	n342128|AK054734|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4612|NULL|-0.4228620|-0.3627884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342128|AK054734|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4612|NULL|-0.4228620|-0.3627884	chr6	133213062	133214956	+	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10"	NA	inter
CUST_9351_PI429285431	1.0389782	A	1.0147253	A	1.01695292638567	0	lncRNA	10855-1_{1..435}	lnc-HDDC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HDDC2-1:1	chr6	125634470	125634904	-	lnc-HDDC2-1	lnc-HDDC2-1:1	XLOC_005826	linc-HDDC2-3	NA	NA	NA	inter
CUST_3404_PI429285431	2.819695	P	3.0655007	P	0.843344682996551	0	lncRNA	3376-2_{3001..4692}	"transcript_id ""ENST00000592873.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592873.1"" | genecode_v17"	chr9	 42472548	 42474239	+	ENSG00000223839.3	ENST00000592873.1	FAM95B1	FAM95B1-002	CBWD7	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20chr9:42478004-42484239"	NA	inter
CUST_51635_PI429285431	0.9192988	A	1.1151536	A	0.873055455352794	0	lncRNA	55205-1_{1..2099}	hg19_lincRNAsTranscripts_TCONS_l2_00010792 range=chr17:42013669-42016281 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010792 range=chr17:42013669-42016281 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 42013669	 42015767	+	NA	NA	NA	NA	PPY	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-95.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10chr17:42018172-42019833"	NA	inter
CUST_51314_PI429285431	1.9484012	A	2.6472921	A	0.616045621783604	0	lncRNA	54919-1_{1..573}	hg19_lincRNAsTranscripts_TCONS_l2_00008608 range=chr15:42930224-42930884 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008608 range=chr15:42930224-42930884 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 42930224	 42930796	+	NA	NA	NA	NA	STARD9	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10chr15:42920224-42940884"	NA	inner
LNCA_21_P0003583	0.921815	A	0.9102443	A	1.00805244602472	0	lncRNA	TCONS_00008011	NA	NA	NA	NA	XLOC_003475	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003475), lincRNA [TCONS_00008011]"	chr4:24670892-24670951	hs|4p15.2	Agilent_HUMAN_G3V2	TCONS_00008011	TCONS_00008011	chr4	 24670892	 24670951	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20671_PI429285431	0.90641695	A	0.90717465	A	0.999474940273418	0	lncRNA	22309-1_{1..484}	lnc-XRCC6BP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XRCC6BP1-2:1	chr12	 58487110	 58487593	+	lnc-XRCC6BP1-2	lnc-XRCC6BP1-2:1	ENSG00000257541.1	RP11-58A17.4	NA	NA	NA	inter
CUST_30227_PI429285431	12.813728	P	12.783831	P	1.02093923400659	0	lncRNA	32002-1_{1..257}	n335090|AJ844624|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249428|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249428|-0.8923710|-0.0737822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335090|AJ844624|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249428|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249428|-0.8923710|-0.0737822	chr1	159888186	159888442	-	NA	NA	NA	NA	IGSF9	NA	chr1:159896829-159898443	inner
CUST_36737_PI429285431	0.9177204	A	0.9175504	A	1.00011784196351	0	lncRNA	37912-2_{3001..3362}	n345219|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_768|NULL|-1.3300000|-0.3283629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345219|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_768|NULL|-1.3300000|-0.3283629	chr13	 41028067	 41028428	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36744_PI429285431	0.9080434	A	0.9143022	A	0.995671127124378	0	lncRNA	37917-1_{1..2775}	n345224|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_773|NULL|-1.2912500|-0.1722897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n345224|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_773|NULL|-1.2912500|-0.1722897	chr13	 44974550	 44977324	-	NA	NA	NA	NA	SERP2	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00chr13:44964550-44971850"	NA	inter
CUST_13829_PI429285431	5.341003	P	5.367486	P	0.981810839696781	0	lncRNA	15472-1_{1..516}	lnc-TRAK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRAK1-1:1	chr3	 42075330	 42075845	+	lnc-TRAK1-1	lnc-TRAK1-1:1	XLOC_002624	linc-TRAK1	LOC100287063	NA	chr3:42065330-42085359	inter
CUST_40936_PI429285431	1.1125829	A	1.4457158	A	0.793810802299503	0	lncRNA	41618-3_{6001..9000}	n410890|NR_038352|lncRNA|Homosapiens||RefGeneNoncode|NR_038352||2.1744600|-0.3788877	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410890|NR_038352|lncRNA|Homosapiens||RefGeneNoncode|NR_038352||2.1744600|-0.3788877	chr5	112318406	112321405	+	NA	NA	NA	NA	MCC	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-10.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.61;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chr5:112357796-112367892"	NA	inner
CUST_14742_PI429285431	0.91725427	A	0.9225513	A	0.996335110750213	0	lncRNA	16406-1_{1..293}	lnc-MBP-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBP-4:3	chr18	 75702049	 75702341	-	lnc-MBP-4	lnc-MBP-4:3	XLOC_012898	linc-MBP-7	NA	NA	NA	inter
CUST_20862_PI429285431	0.922414	A	0.9044421	A	1.01253508557133	0	lncRNA	22493-1_{1..575}	lnc-SP3-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SP3-3:4	chr2	174072275	174072849	-	lnc-SP3-3	lnc-SP3-3:4	ENSG00000238133.2	MLK7-AS1	ZAK	NA	chr2:174062275-174082340	inter
CUST_10210_PI429285431	0.90757495	A	0.9025679	A	1.00347665217446	0	lncRNA	11737-1_{1..401}	lnc-IVNS1ABP-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IVNS1ABP-2:3	chr1	185597539	185597939	-	lnc-IVNS1ABP-2	lnc-IVNS1ABP-2:3	XLOC_001126	linc-IVNS1ABP	NA	NA	NA	inter
CUST_27774_PI429285431	0.89920604	A	0.8978717	A	1.00092532185527	0	lncRNA	29359-1_{1..480}	n324994|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079225|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079225|-1.2174100|-0.4364881	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324994|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079225|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079225|-1.2174100|-0.4364881	chr20	 37847776	 37848255	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34865_PI429285431	0.99415946	A	0.89036655	A	1.07459491029384	0	lncRNA	36291-1_{1..227}	n341776|Y12020|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4253|NULL|-1.1171100|-0.1221654	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341776|Y12020|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4253|NULL|-1.1171100|-0.1221654	chr9	124925826	124926052	+	NA	NA	NA	NA	NDUFA8	NA	chr9:124915826-124922098	inner
CUST_33660_PI429285431	4.6262274	P	5.256059	P	0.646251845299675	0	lncRNA	35222-2_{3001..3444}	n340423|X51779|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2884|NULL|-0.2590490|-0.2912712	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340423|X51779|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2884|NULL|-0.2590490|-0.2912712	chr5	 29982775	 29983218	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-60.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90"	NA	inter
CUST_33561_PI429285431	0.9099691	A	1.341336	A	0.741558852878654	0	lncRNA	35127-1_{1..1827}	n340309|AK094462|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2770|NULL|-1.0647000|-0.2216640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340309|AK094462|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2770|NULL|-1.0647000|-0.2216640	chr5	  5132199	  5134025	-	NA	NA	NA	NA	ADAMTS16	NA	chr5:5140443-5144697	inter
CUST_14912_PI429285431	2.2771819	A	1.1178395	A	2.23355595892963	0	lncRNA	16575-1_{1..3000}	lnc-LRFN2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-LRFN2-2:1	chr6	 40321178	 40324177	-	lnc-LRFN2-2	lnc-LRFN2-2:1	XLOC_005712	linc-MOCS1-3	NA	NA	NA	inter
CUST_45459_PI429285431	1.9184617	A	1.0763264	A	1.79270151584743	0	lncRNA	49875-1_{1..1247}	"gi|310124543|ref|XR_109860.1| PREDICTED: Homo sapiens uncharacterized locus ESP33 (ESP33), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124543|ref|XR_109860.1| PREDICTED: Homo sapiens uncharacterized locus ESP33 (ESP33), misc_RNA"	NA	NA	NA	NA	NA	XR_109860.1	NA	NA	NA	NA	NA	Unknown
CUST_23150_PI429285431	8.680475	P	8.584343	P	1.06890378654629	0	lncRNA	24721-1_{1..440}	lnc-KANSL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KANSL3-1:1	chr2	 97197964	 97198403	-	lnc-KANSL3-1	lnc-KANSL3-1:1	ENSG00000235480.1	RP11-363D14.1	ARID5A	NA	chr2:97202464-97208043	inter
CUST_40909_PI429285431	4.663404	P	4.4987507	P	1.12089667835225	0	lncRNA	41595-1_{1..374}	n410752|NR_038204|lncRNA|Homosapiens||RefGeneNoncode|NR_038204||-0.9535520|-0.1621157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410752|NR_038204|lncRNA|Homosapiens||RefGeneNoncode|NR_038204||-0.9535520|-0.1621157	chr8	 96281063	 96281436	+	NA	NA	NA	NA	C8orf37	NA	chr8:96271063-96281462	inter
CUST_19280_PI429285431	0.89940906	A	0.89934	A	1.00004786989002	0	lncRNA	20948-1_{1..444}	lnc-SOX13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SOX13-1:1	chr1	204100761	204101204	+	lnc-SOX13-1	lnc-SOX13-1:1	ENSG00000261065.1	RP11-74C13.4	SOX13	NA	chr1:204090761-204096871	inner
CUST_40434_PI429285431	10.038637	P	9.991987	P	1.03286378297015	0	lncRNA	41215-2_{3001..3263}	n409326|NR_033681|lncRNA|Homosapiens||RefGeneNoncode|NR_033681||5.8662100|-0.0969415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409326|NR_033681|lncRNA|Homosapiens||RefGeneNoncode|NR_033681||5.8662100|-0.0969415	chr17	 79863776	 79864038	-	NA	NA	NA	NA	ANAPC11	NA	chr17:79850776-79858363	inter
CUST_22444_PI429285431	0.9145468	A	0.9402577	A	0.982336424807892	0	lncRNA	24031-1_{1..526}	lnc-TRMT2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRMT2A-1:1	chr22	 20099312	 20099837	-	lnc-TRMT2A-1	lnc-TRMT2A-1:1	ENSG00000243762.1	AC006547.8	DGCR8	NA	chr22:20089312-20099400	inner
LNCA_21_P0006315	2.0875802	A	1.6758242	A	1.33030403051036	0	lncRNA	TCONS_00016470	NA	NA	NA	NA	XLOC_007836	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007836), lincRNA [TCONS_00016470]"	chr9:118666933-118666874	hs|9q33.1	Agilent_HUMAN_G3V2	TCONS_00016470	TCONS_00016470	chr9	118666874	118666933	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24473_PI429285431	10.599889	P	10.414967	P	1.13675551234206	0	lncRNA	26025-2_{3001..3351}	lnc-HMBS-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMBS-1:4	chr11	118955169	118955519	+	lnc-HMBS-1	lnc-HMBS-1:4	ENSG00000160695.8	VPS11	HMBS	NA	chr11:118955587-118962674	inner
CUST_28814_PI429285431	5.3815107	P	5.0772333	P	1.23480001021457	0	lncRNA	30522-1_{1..807}	n326226|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090308|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090308|-1.3896500|-0.4432932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326226|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090308|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090308|-1.3896500|-0.4432932	chr1	219748523	219749329	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27318_PI429285431	1.5549154	A	1.6850986	A	0.913715415109091	0	lncRNA	28878-1_{1..2632}	n324472|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041295|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041295|-0.0913555|-0.3093074	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324472|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041295|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041295|-0.0913555|-0.3093074	chr6	 79576150	 79578781	-	NA	NA	NA	NA	IRAK1BP1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_IRAK1BP1:range=chr6:79577294-796080515'pad=0,hg19_refFlat_IRAK1BP1:range=chr6:79577294-796080515'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60chr6:79577189-79589739"	NA	inner
CUST_29324_PI429285431	0.89128256	A	0.8936952	A	0.998329082925227	0	lncRNA	31075-1_{1..265}	n332530|DQ323658|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000436172|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000436172|0.5482220|-0.2209473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332530|DQ323658|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000436172|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000436172|0.5482220|-0.2209473	chr2	175622370	175622634	-	NA	NA	NA	NA	CHRNA1	NA	chr2:175612370-175629200	inner
CUST_29374_PI429285431	1.8104742	A	1.8413422	A	0.978831204880328	0	lncRNA	31126-1_{1..211}	n332643|AB034691|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059108|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059108|-0.4638220|-0.2417637	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332643|AB034691|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059108|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059108|-0.4638220|-0.2417637	chr10	114919655	114919865	+	NA	NA	NA	NA	TCF7L2	NA	chr10:114909655-114927437	inner
CUST_3227_PI429285431	5.423756	P	5.368267	P	1.03921128320418	0	lncRNA	3206-1_{1..614}	"transcript_id ""ENST00000521955.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521955.1"" | genecode_v17"	chr8	 93512811	 93513424	-	ENSG00000253371.1	ENST00000521955.1	RP11-587H10.1	RP11-587H10.1-001	NA	NA	NA	inter
CUST_34240_PI429285431	0.9072852	A	0.90433854	A	1.00204455633184	0	lncRNA	35746-2_{3001..3169}	n341097|AL833615|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3563|NULL|-0.8043170|-0.3959733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341097|AL833615|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3563|NULL|-0.8043170|-0.3959733	chr11	 93462819	 93462987	-	NA	NA	NA	NA	KIAA1731	"hg19_refFlat_KIAA1731:range=chr11:93399874-934634355'pad=0,hg19_refFlat_KIAA1731:range=chr11:93399874-934634355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.10chr11:93449819-93463522"	NA	inner
CUST_13753_PI429285431	3.7317	P	3.9029777	P	0.888055840209881	0	lncRNA	15398-1_{1..292}	lnc-POLE-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLE-3:3	chr12	133169927	133170218	-	lnc-POLE-3	lnc-POLE-3:3	XLOC_010275	linc-GALNT9-1	LOC100507055	NA	chr12:133179736-133180155	inter
CUST_32389_PI429285431	0.9038335	A	0.9037335	A	1.00006931712038	0	lncRNA	34066-1_{1..1077}	n338980|CR623291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1408|NULL|-1.2122700|-0.3105005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338980|CR623291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1408|NULL|-1.2122700|-0.3105005	chr2	152101985	152103061	-	NA	NA	NA	NA	RBM43	NA	chr2:152091985-152113089	inter
CUST_31287_PI429285431	1.1960835	A	0.921548	A	1.20960457392414	0	lncRNA	33075-1_{1..1645}	n337748|BC007386|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|130|NULL|-0.4749490|-0.1663152	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337748|BC007386|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|130|NULL|-0.4749490|-0.1663152	chr1	 22443797	 22445441	-	NA	NA	NA	NA	WNT4	NA	chr1:22443798-22455419	inner
CUST_49718_PI429285431	4.060965	P	3.8797505	P	1.13383797935727	0	lncRNA	53494-1_{1..1076}	hg19_lincRNAsTranscripts_TCONS_l2_00025728 range=chr7:26438287-26439586 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025728 range=chr7:26438287-26439586 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 26438287	 26439362	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006953	0.9243116	A	0.9211369	A	1.00220295730678	0	lncRNA	THC2703495	NA	NA	NA	NA	XLOC_008695	NA	NA	THC2703495	NA	"BROAD Institute lincRNA (XLOC_008695), lincRNA [TCONS_00018413]"	chr10:003528903-003528844	hs|10p15.2	Agilent_HUMAN_G3V2	THC2703495	THC2703495	chr10	  3528844	  3528903	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21777_PI429285431	0.9070529	A	0.91425586	A	0.99501973145146	0	lncRNA	23387-1_{1..484}	lnc-CACNG5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CACNG5-1:1	chr17	 64673243	 64673726	+	lnc-CACNG5-1	lnc-CACNG5-1:1	ENSG00000229330.2	AC006947.1	PRKCA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40chr17:64663243-64683522"	NA	inner
CUST_41036_PI429285431	3.1752777	P	3.0957217	A	1.05669278554463	0	lncRNA	41696-1_{1..1942}	n411702|NR_044993|lncRNA|Homosapiens||RefGeneNoncode|NR_044993||0.0867260|-0.2359450	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n411702|NR_044993|lncRNA|Homosapiens||RefGeneNoncode|NR_044993||0.0867260|-0.2359450	chr13	114567149	114569090	+	NA	NA	NA	NA	GAS6	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90chr13:114557149-114567046"	NA	inter
CUST_45363_PI429285431	0.90306	A	2.695515	A	0.288680387191584	0	lncRNA	49800-1_{1..1052}	"gi|337756469|ref|NR_039990.1| Homo sapiens uncharacterized LOC100507299 (LOC100507299), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|337756469|ref|NR_039990.1| Homo sapiens uncharacterized LOC100507299 (LOC100507299), non-coding RNA"	Chr9	 72830975	 72832026	-	100507299	NR_039990.1	NA	NA	NA	NA	NA	inter
CUST_45560_PI429285431	4.286921	P	4.581019	P	0.815582090251524	0	lncRNA	49959-1_{1..1706}	"gi|389616120|ref|NR_051972.1| Homo sapiens cAMP responsive element modulator (CREM), transcript variant 12, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|389616120|ref|NR_051972.1| Homo sapiens cAMP responsive element modulator (CREM), transcript variant 12, non-coding RNA"	Chr10	 35484830	 35486535	+	1390	NR_051972.1	NA	NA	NA	NA	NA	inter
CUST_4912_PI429285431	0.89648473	A	0.90166765	A	0.99641391901711	0	lncRNA	4854-1_{1..477}	"transcript_id ""ENST00000556819.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556819.1"" | genecode_v17"	chr14	 82194124	 82194600	-	ENSG00000258718.1	ENST00000556819.1	RP11-226P1.2	RP11-226P1.2-002	NA	NA	NA	inter
CUST_41963_PI429285431	10.369419	P	10.139946	P	1.1724066042768	0	lncRNA	43747-1_{1..83}	ENST00000408370 ncrna:miRNA chromosome:GRCh37:9:131019986:131020068:-1 gene:ENSG00000221297 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408370 ncrna:miRNA chromosome:GRCh37:9:131019986:131020068:-1 gene:ENSG00000221297 gene_biotype:miRNA transcript_biotype:miRNA	chr9	131019986	131020068	-	ENSG00000221297	ENST00000408370	NA	NA	GOLGA2	NA	chr9:131018108-131030068	inner
CUST_4087_PI429285431	2.5170534	A	2.6144667	A	0.934707386542259	0	lncRNA	4048-1_{1..982}	"transcript_id ""ENST00000501294.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000501294.1"" | genecode_v17"	chr11	115628169	115629150	-	ENSG00000246100.3	ENST00000501294.1	CTC-774J1.2	CTC-774J1.2-002	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.30"	NA	inter
LNCA_21_P0006421	0.9209004	A	0.9137199	A	1.0049895498824	0	lncRNA	TCONS_00016984	NA	NA	NA	NA	XLOC_007966	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007966), lincRNA [TCONS_00016984]"	chrX:45488859-45489189	hs|Xp11.3	Agilent_HUMAN_G3V2	TCONS_00016984	TCONS_00016984	chrX	 45488859	 45489189	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2499_PI429285431	0.8980087	A	0.89438975	A	1.00251161381975	0	lncRNA	2491-1_{1..709}	"transcript_id ""ENST00000457253.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457253.1"" | genecode_v17"	chr6	 28805646	 28806354	-	ENSG00000225173.1	ENST00000457253.1	XXbac-BPG308K3.5	XXbac-BPG308K3.5-001	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90"	NA	inter
CUST_17419_PI429285431	0.9032458	A	0.9020592	A	1.00082282678083	0	lncRNA	19144-1_{1..215}	lnc-NTSR2-5:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTSR2-5:7	chr2	 13143949	 13144163	-	lnc-NTSR2-5	lnc-NTSR2-5:7	XLOC_001992	linc-NTSR2-2	NA	NA	NA	inter
CUST_13620_PI429285431	0.9126305	A	1.287153	A	0.771360673701153	0	lncRNA	15259-1_{1..289}	lnc-C14orf118-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf118-1:2	chr14	 76705354	 76705642	+	lnc-C14orf118-1	lnc-C14orf118-1:2	XLOC_010878	linc-ESRRB-2	NA	NA	NA	inter
CUST_488_PI429285431	3.8989344	P	4.20536	P	0.808642760775193	0	lncRNA	479-1_{1..1809}	"transcript_id ""ENST00000457217.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457217.1"" | genecode_v17"	chr1	175846479	175848287	+	ENSG00000224718.1	ENST00000457217.1	RP11-222A5.1	RP11-222A5.1-001	NA	NA	NA	inter
CUST_6888_PI429285431	0.91352427	A	0.92894715	A	0.989366612667111	0	lncRNA	6838-1_{1..269}	"transcript_id ""ENST00000426942.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426942.1"" | genecode_v17"	chr21	 44881974	 44882242	-	ENSG00000185186.4	ENST00000426942.1	LINC00313	LINC00313-002	NA	NA	NA	inter
LNCA_21_P0000950	3.4228256	P	3.60004	P	0.884408992876288	0	lncRNA	ENST00000416696	NA	NA	NA	NA	XLOC_000055	NA	ENST00000416696	NA	NA	"BROAD Institute lincRNA (XLOC_000055), lincRNA [TCONS_00000154]"	chr1:12588377-12588436	hs|1p36.22	Agilent_HUMAN_G3V2	ENST00000416696	ENST00000416696	chr1	 12588377	 12588436	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16403_PI429285431	1.5887163	A	1.2572036	A	1.25833207410965	0	lncRNA	18099-1_{1..514}	lnc-USP12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP12-1:1	chr13	 27760643	 27761156	-	lnc-USP12-1	lnc-USP12-1:1	XLOC_010540	linc-USP12-3	NA	NA	NA	inter
CUST_40941_PI429285431	2.0600328	A	1.1696604	A	1.85365454218977	0	lncRNA	41622-1_{1..3000}	n410901|NR_038363|lncRNA|Homosapiens||RefGeneNoncode|NR_038363||4.7923700|-0.2531944	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410901|NR_038363|lncRNA|Homosapiens||RefGeneNoncode|NR_038363||4.7923700|-0.2531944	chr5	149372685	149375684	-	NA	NA	NA	NA	HMGXB3	NA	chr5:149380169-149390171	inner
CUST_52190_PI429285431	1.1058425	A	0.8979982	A	1.15496113093858	0	lncRNA	55706-3_{6001..6509}	hg19_lincRNAsTranscripts_TCONS_l2_00017666 range=chr22:25844098-25868137 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017666 range=chr22:25844098-25868137 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 25850098	 25850606	+	NA	NA	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00"	NA	inter
CUST_30956_PI429285431	6.3601623	P	7.1668496	P	0.571693067106855	0	lncRNA	32744-1_{1..494}	n337076|DQ225272|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342500|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342500|2.5260200|-0.0804319	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337076|DQ225272|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342500|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342500|2.5260200|-0.0804319	chr19	  1556691	  1557184	-	NA	NA	NA	NA	MBD3	NA	chr19:1576678-1577876	inner
LNCA_32_P191895	5.8372316	P	4.349052	P	2.80534771513479	0	lncRNA	XR_132551	XR_132551	XR_132551	100129960	Hs.454036	LOC100129960	syndecan binding protein (syntenin) pseudogene	NA	THC2492992	NA	"PREDICTED: Homo sapiens syntenin-1-like (LOC100129960), miscRNA [XR_132551]"	chr8:70855144-70855203	hs|8q13.3	Agilent_HUMAN_G3V2	XR_132551	XR_132551	chr8	 70855144	 70855203	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9221_PI429285431	12.475552	P	12.755901	P	0.82339180780651	0	lncRNA	10732-1_{1..683}	lnc-RPS24-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RPS24-3:5	chr10	 80112849	 80113531	+	lnc-RPS24-3	lnc-RPS24-3:5	ENSG00000230417	RP11-90J7.3	NA	NA	NA	inter
CUST_8009_PI429285431	3.3697278	P	3.2654681	P	1.07494265621501	0	lncRNA	9620-1_{1..1322}	lnc-FOXC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FOXC1-2:1	chr6	  1518831	  1520152	+	lnc-FOXC1-2	lnc-FOXC1-2:1	ENSG00000251522	ENST00000514601	NA	"hg19_refFlat_ELF2:range=chr4:139980137-1400588555'pad=0,hg19_refFlat_ELF2:range=chr4:139980137-1400588555'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ELF2:range=chr4:139980137-1400053445'pad=0,hg19_refFlat_ELF2:range=chr4:139980137-1400053445'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00"	NA	inter
CUST_38700_PI429285431	5.1531887	P	5.229759	P	0.948309372600497	0	lncRNA	39695-1_{1..359}	n384106|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zvv.2||1.5330000|-0.0719765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384106|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zvv.2||1.5330000|-0.0719765	chr22	 22380461	 22380819	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011951	5.387642	P	5.1767635	P	1.15739274029852	0	lncRNA	TCONS_l2_00014795	NA	NA	NA	NA	XLOC_l2_008203	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008203), lincRNA [TCONS_l2_00014795]"	chr2:111991234-111982762	hs|2q13	Agilent_HUMAN_G3V2	TCONS_l2_00014795	TCONS_l2_00014795	chr2	111982762	111991234	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14159_PI429285431	3.45405	P	4.023988	P	0.673645737820709	0	lncRNA	15810-1_{1..218}	lnc-FAM27D1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM27D1.1-3:1	chr9	 47163833	 47164050	+	lnc-FAM27D1.1-3	lnc-FAM27D1.1-3:1	XLOC_007368	linc-ANKRD20A1-11	NA	NA	NA	inter
CUST_19999_PI429285431	0.89056396	A	0.88743037	A	1.00217439965918	0	lncRNA	21652-1_{1..359}	lnc-PTPN20A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PTPN20A-1:1	chr10	 46790404	 46790762	-	lnc-PTPN20A-1	lnc-PTPN20A-1:1	ENSG00000241338.1	RP11-342C24.1	NA	NA	NA	inter
CUST_39341_PI429285431	0.8969425	A	1.0199182	A	0.918291629394132	0	lncRNA	40308-1_{1..375}	n386411|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010jub.1||-1.2681900|-0.3286744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386411|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010jub.1||-1.2681900|-0.3286744	chr6	 32546122	 32546496	-	NA	NA	NA	NA	HLA-DRB1	NA	chr6:32546546-32556497	inter
CUST_23080_PI429285431	0.8849773	A	0.9723257	A	0.941251132024747	0	lncRNA	24651-1_{1..199}	lnc-CECR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CECR2-1:1	chr22	 17809924	 17810122	+	lnc-CECR2-1	lnc-CECR2-1:1	ENSG00000231004.2	CECR9	NA	NA	NA	inter
LNCA_21_P0003347	0.9083805	A	0.89747405	A	1.00758842231036	0	lncRNA	ENST00000505636	NA	NA	NA	NA	XLOC_003494	NA	ENST00000505636	THC2692000	NA	"BROAD Institute lincRNA (XLOC_003494), lincRNA [TCONS_00007503]"	chr4:31353223-31353282	hs|4p15.1	Agilent_HUMAN_G3V2	ENST00000505636	ENST00000505636	chr4	 31353223	 31353282	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012422	0.9083208	A	0.89739496	A	1.00760196451453	0	lncRNA	TCONS_l2_00019077	NA	NA	NA	NA	XLOC_l2_010056	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010056), lincRNA [TCONS_l2_00019077]"	chr3:194430098-194435738	hs|3q29	Agilent_HUMAN_G3V2	TCONS_l2_00019077	TCONS_l2_00019077	chr3	194430098	194435738	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6259_PI429285431	3.2116952	P	4.110235	P	0.536429394765694	0	lncRNA	6184-1_{1..597}	"transcript_id ""ENST00000581971.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581971.1"" | genecode_v17"	chr18	 73556880	 73557476	-	ENSG00000266460.1	ENST00000581971.1	RP11-173L6.1	RP11-173L6.1-001	NA	NA	NA	inter
LNCA_21_P0009794	6.3701396	P	6.5219593	P	0.900114414056359	0	lncRNA	TCONS_00027619	NA	NA	NA	NA	XLOC_013142	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013142), lincRNA [TCONS_00027619]"	chr19:53727779-53727901	hs|19q13.42	Agilent_HUMAN_G3V2	TCONS_00027619	TCONS_00027619	chr19	 53727779	 53727901	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30754_PI429285431	1.0718182	A	0.8967002	A	1.12905674812483	0	lncRNA	32539-1_{1..376}	n336573|Z18317|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326550|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326550|2.5807700|-0.1188301	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336573|Z18317|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326550|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326550|2.5807700|-0.1188301	chr14	106330424	106330799	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6055_PI429285431	2.5971904	A	2.0714316	A	1.43969060069643	0	lncRNA	5981-1_{1..561}	"transcript_id ""ENST00000584204.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584204.1"" | genecode_v17"	chr18	  4807934	  4808494	-	ENSG00000266268.1	ENST00000584204.1	RP11-172F10.1	RP11-172F10.1-001	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_22735_PI429285431	1.6911114	A	1.3470194	A	1.26935182942195	0	lncRNA	24319-1_{1..3000}	lnc-CLSTN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-CLSTN2-1:1	chr3	140290548	140293547	+	lnc-CLSTN2-1	lnc-CLSTN2-1:1	ENSG00000261179.1	RP11-13L2.4	CLSTN2	NA	chr3:140280548-140286919	inter
CUST_18616_PI429285431	5.161257	P	4.6804037	P	1.39556884891927	0	lncRNA	20322-2_{3001..5131}	lnc-PCYOX1L-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCYOX1L-2:8	chr5	148792725	148794855	+	lnc-PCYOX1L-2	lnc-PCYOX1L-2:8	ENSG00000253864	AC131025.8	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70"	NA	inter
CUST_45012_PI429285431	3.4024441	P	3.729115	P	0.797374348635822	0	lncRNA	49514-1_{1..1990}	"gi|213417936|ref|NR_015448.1| Homo sapiens DLX6 antisense RNA 1 (DLX6-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|213417936|ref|NR_015448.1| Homo sapiens DLX6 antisense RNA 1 (DLX6-AS1), non-coding RNA"	Chr7	 96597827	 96599816	-	285987	NR_015448.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70"	NA	inter
LNCA_21_P0008693	0.90966547	A	0.89861846	A	1.00768659519104	0	lncRNA	TCONS_00023547	NA	NA	NA	NA	XLOC_011380	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011380), lincRNA [TCONS_00023547]"	chr15:99641202-99641261	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_00023547	TCONS_00023547	chr15	 99641202	 99641261	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10883_PI429285431	1.878625	A	1.0978048	A	1.71810737250055	0	lncRNA	12424-1_{1..1398}	lnc-GLB1L2-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLB1L2-1:8	chr11	134352521	134353918	+	lnc-GLB1L2-1	lnc-GLB1L2-1:8	XLOC_009344	TCONS_00019547	NA	NA	NA	inter
CUST_18366_PI429285431	1.2504462	A	2.3855777	A	0.455293415431456	0	lncRNA	20093-1_{1..1531}	lnc-ZNF180-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF180-1:4	chr19	 45033481	 45035011	-	lnc-ZNF180-1	lnc-ZNF180-1:4	ENSG00000176395	CEACAM20	CEACAM20	NA	chr19:45023481-45033548	inner
CUST_13780_PI429285431	0.9047651	A	0.9012846	A	1.00241541117867	0	lncRNA	15422-2_{3001..4659}	lnc-RP6-24A23.6.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP6-24A23.6.1-1:1	chrX	107969232	107970890	-	lnc-RP6-24A23.6.1-1	lnc-RP6-24A23.6.1-1:1	XLOC_008207	linc-COL4A6	IRS4	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90chrX:107975727-107978338"	NA	inter
CUST_31322_PI429285431	7.4255004	P	7.2542424	P	1.12603994007566	0	lncRNA	33105-1_{1..910}	n337788|BC007687|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|170|NULL|5.6344900|-0.1386286	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337788|BC007687|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|170|NULL|5.6344900|-0.1386286	chr1	 25757435	 25758344	+	NA	NA	NA	NA	TMEM57	NA	chr1:25757388-25794955	inner
CUST_52181_PI429285431	1.2467976	A	2.0523524	A	0.572142016166973	0	lncRNA	55699-1_{1..540}	hg19_lincRNAsTranscripts_TCONS_l2_00017984 range=chr22:25676528-25678146 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017984 range=chr22:25676528-25678146 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 25676528	 25677067	-	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90"	NA	inter
CUST_37375_PI429285431	0.8949883	A	1.0856205	A	0.876221670138296	0	lncRNA	38479-1_{1..381}	n345824|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1373|NULL|-1.2795800|-0.2908624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345824|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1373|NULL|-1.2795800|-0.2908624	chr1	 61405913	 61406293	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49897_PI429285431	0.9076531	A	0.9068394	A	1.00056417294655	0	lncRNA	53646-1_{1..422}	hg19_lincRNAsTranscripts_TCONS_l2_00026709 range=chr7:76728089-76748843 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026709 range=chr7:76728089-76748843 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 76728089	 76728510	-	NA	NA	NA	NA	CCDC146	NA	chr7:76744671-76758843	inter
CUST_11409_PI429285431	0.8900507	A	1.0658221	A	0.885294031355902	0	lncRNA	12975-1_{1..326}	lnc-ZFP64-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP64-4:2	chr20	 51233279	 51233604	-	lnc-ZFP64-4	lnc-ZFP64-4:2	XLOC_013798	linc-ZFP64-6	NA	NA	NA	inter
CUST_34241_PI429285431	2.377876	A	2.8397036	A	0.726065898607538	0	lncRNA	35747-1_{1..1691}	n341098|AK093426|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3564|NULL|-1.0849000|-0.2558200	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341098|AK093426|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3564|NULL|-1.0849000|-0.2558200	chr11	 93760134	 93761824	-	NA	NA	NA	NA	HEPHL1	NA	chr11:93750134-93771825	inner
CUST_36049_PI429285431	1.073748	A	1.4791622	A	0.755019494385002	0	lncRNA	37364-1_{1..2000}	n344645|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_193|NULL|-1.3187100|-0.1767558	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344645|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_193|NULL|-1.3187100|-0.1767558	chr17	 75084810	 75086809	-	NA	NA	NA	NA	SEC14L1	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30chr17:75084725-75101072"	NA	inner
CUST_41655_PI429285431	0.9611029	A	0.894792	A	1.04703589333212	0	lncRNA	43071-1_{1..97}	ENST00000583125 ncrna:miRNA chromosome:GRCh37:11:46134673:46134769:-1 gene:ENSG00000263539 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583125 ncrna:miRNA chromosome:GRCh37:11:46134673:46134769:-1 gene:ENSG00000263539 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 46134673	 46134769	-	ENSG00000263539	ENST00000583125	NA	NA	PHF21A	NA	chr11:46124673-46142985	inner
CUST_17812_PI429285431	0.9101236	A	0.91079086	A	0.999537597553279	0	lncRNA	19549-1_{1..3000}	lnc-TMEM14A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TMEM14A-1:1	chr6	 52531547	 52534546	+	lnc-TMEM14A-1	lnc-TMEM14A-1:1	XLOC_005323	linc-TMEM14A-1	TMEM14A	NA	chr6:52535884-52543951	inter
CUST_7720_PI429285431	7.041745	P	7.286632	P	0.84388189112347	0	lncRNA	9352-1_{1..3000}	lnc-C1QTNF8-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1QTNF8-4:1	chr16	  1022026	  1025025	-	lnc-C1QTNF8-4	lnc-C1QTNF8-4:1	ENSG00000249296	ENST00000507971	LMF1	NA	chr16:1012026-1031318	inter
CUST_8542_PI429285431	3.9397519	P	4.2045603	P	0.832309263868076	0	lncRNA	10101-1_{1..2462}	lnc-FARP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FARP1-2:1	chr13	 98651369	 98653830	+	lnc-FARP1-2	lnc-FARP1-2:1	ENSG00000250142	ENST00000515713	IPO5	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20chr13:98641369-98662538"	NA	inner
CUST_24567_PI429285431	8.94467	P	8.973427	P	0.980264512060073	0	lncRNA	26115-1_{1..773}	lnc-FAM70B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM70B-1:1	chr13	114542057	114542829	+	lnc-FAM70B-1	lnc-FAM70B-1:1	ENSG00000233695.1	GAS6-AS1	GAS6	"hg19_refFlat_GAS6:range=chr13:114523837-1145668935'pad=0,hg19_refFlat_GAS6:range=chr13:114523837-1145668935'pad=0 3'pad=0 strand=- repeatMasking=none,-98.60chr13:114532057-114552321"	NA	inner
CUST_3977_PI429285431	4.3773355	P	4.6213393	P	0.844398663309153	0	lncRNA	3943-5_{12001..15000}	"transcript_id ""ENST00000501122.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000501122.2"" | genecode_v17"	chr11	 65202269	 65205268	+	ENSG00000245532.3	ENST00000501122.2	NEAT1	NEAT1-001	FRMD8	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr11:65180269-65180996"	NA	inter
CUST_32436_PI429285431	9.571178	P	9.92136	P	0.784485126669153	0	lncRNA	34110-1_{1..346}	n339032|CR749453|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1461|NULL|-0.5649920|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n339032|CR749453|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1461|NULL|-0.5649920|-1.0000000	chr16	  2014996	  2015341	+	NA	NA	NA	NA	RNF151	NA	chr16:2016875-2018976	inter
CUST_40540_PI429285431	1.0686612	A	0.8984537	A	1.12522031128283	0	lncRNA	41298-1_{1..1195}	n409663|NR_034063|lncRNA|Homosapiens||RefGeneNoncode|NR_034063||5.1133300|-0.2723897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409663|NR_034063|lncRNA|Homosapiens||RefGeneNoncode|NR_034063||5.1133300|-0.2723897	chr11	104757417	104758611	-	NA	NA	NA	NA	CASP12	NA	chr11:104756445-104769397	inter
CUST_11646_PI429285431	1.118501	A	0.92782193	A	1.14130079455607	0	lncRNA	13223-1_{1..543}	lnc-AL353597.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL353597.1-2:1	chr6	 37469844	 37470386	+	lnc-AL353597.1-2	lnc-AL353597.1-2:1	XLOC_005277	linc-ZFAND3-3	CCDC167	NA	chr6:37459844-37467700	inter
CUST_36262_PI429285431	0.901243	A	1.4011252	A	0.707164520748462	0	lncRNA	37500-3_{6001..7281}	n344793|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_342|NULL|-1.3348700|-0.3926699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344793|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_342|NULL|-1.3348700|-0.3926699	chr5	 27478375	 27479655	+	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80"	NA	inter
CUST_48958_PI429285431	0.9157912	A	0.9065157	A	1.00644999890134	0	lncRNA	52797-1_{1..690}	hg19_lincRNAsTranscripts_TCONS_l2_00020286 range=chr3:183613837-183622086 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020286 range=chr3:183613837-183622086 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	183613837	183614526	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10737_PI429285431	1.8495133	A	2.5085926	A	0.633282316547235	0	lncRNA	12273-3_{6001..8941}	lnc-C20orf166-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf166-3:1	chr20	 61063976	 61066916	+	lnc-C20orf166-3	lnc-C20orf166-3:1	XLOC_013601	linc-C20orf166	GATA5	NA	chr20:61047976-61051026	inter
CUST_11580_PI429285431	2.1705973	A	3.6069405	A	0.369502697063294	0	lncRNA	13159-1_{1..557}	lnc-CDC42-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDC42-1:1	chr1	 22584152	 22584708	+	lnc-CDC42-1	lnc-CDC42-1:1	XLOC_000090	linc-ZBTB40	NA	NA	NA	inter
CUST_26309_PI429285431	7.6631765	P	7.909135	P	0.843255366654551	0	lncRNA	27815-1_{1..832}	lnc-KDM4C-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KDM4C-1:3	chr9	  6726946	  6727777	+	lnc-KDM4C-1	lnc-KDM4C-1:3	ENSG00000225489.1	RP11-390F4.3	KDM4C	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_GJC3:range=chr7:99521168-995272435'pad=0,hg19_refFlat_GJC3:range=chr7:99521168-995272435'pad=0 3'pad=0 strand=- repeatMasking=none,-61.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30chr9:6716946-6737438"	NA	inner
CUST_24284_PI429285431	5.310872	P	7.379814	P	0.238334217769522	0	lncRNA	25835-1_{1..480}	lnc-HEATR8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HEATR8-1:1	chr1	 55075422	 55075901	+	lnc-HEATR8-1	lnc-HEATR8-1:1	ENSG00000240289.1	RP11-240D10.2	ACOT11	"hg19_refFlat_FAM151A:range=chr1:55074941-550890685'pad=0,hg19_refFlat_FAM151A:range=chr1:55074941-550890685'pad=0 3'pad=0 strand=- repeatMasking=none,-96.80chr1:55065422-55085796"	NA	inner
CUST_39428_PI429285431	0.92468774	A	0.91432065	A	1.00721179987652	0	lncRNA	40381-8_{21001..24000}	n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	chr13	 19429542	 19432541	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_12162_PI429285431	3.7932138	P	3.9918506	P	0.87137353373863	0	lncRNA	13760-1_{1..1118}	lnc-WRNIP1-2:25	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRNIP1-2:25	chr6	  2413014	  2414131	+	lnc-WRNIP1-2	lnc-WRNIP1-2:25	XLOC_005127	linc-WRNIP1-2	NA	NA	NA	inter
LNCA_21_P0005415	0.92975605	A	0.91377175	A	1.01114107713892	0	lncRNA	TCONS_00013563	NA	NA	NA	NA	XLOC_006207	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006207), lincRNA [TCONS_00013563]"	chr7:110232083-110232142	hs|7q31.1	Agilent_HUMAN_G3V2	TCONS_00013563	TCONS_00013563	chr7	110232083	110232142	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30880_PI429285431	1.4858572	A	0.9228839	A	1.47731072269611	0	lncRNA	32668-1_{1..423}	n336888|AY789479|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332367|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332367|1.8178600|-0.1026965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336888|AY789479|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332367|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332367|1.8178600|-0.1026965	chr21	 35821671	 35822093	-	NA	NA	NA	NA	KCNE1	NA	chr21:35818988-35841857	inner
CUST_18194_PI429285431	1.2908411	A	0.9219822	A	1.29133104798882	0	lncRNA	19929-1_{1..2090}	lnc-SPRYD7-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPRYD7-1:5	chr13	 50655959	 50658048	-	lnc-SPRYD7-1	lnc-SPRYD7-1:5	ENSG00000231607	DLEU2	NA	NA	NA	inter
CUST_36001_PI429285431	1.2308198	A	1.9845043	A	0.593086936482182	0	lncRNA	37336-1_{1..3000}	n344611|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_159|NULL|-1.6334500|-0.2534486	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344611|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_159|NULL|-1.6334500|-0.2534486	chr17	 43699325	 43702324	-	NA	NA	NA	NA	CRHR1	NA	chr17:43697710-43728042	inner
CUST_40733_PI429285431	4.1642566	P	3.7353568	P	1.34620656747729	0	lncRNA	41467-1_{1..2507}	n410438|NR_037570|lncRNA|Homosapiens||RefGeneNoncode|NR_037570||7.7204500|-0.2299326	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410438|NR_037570|lncRNA|Homosapiens||RefGeneNoncode|NR_037570||7.7204500|-0.2299326	chr20	 34256609	 34259115	-	NA	NA	NA	NA	RBM39	NA	chr20:34291531-34297287	inter
CUST_5600_PI429285431	1.0402837	A	0.9058594	A	1.09765471294157	0	lncRNA	5529-1_{1..260}	"transcript_id ""ENST00000562790.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562790.1"" | genecode_v17"	chr16	 68961450	 68961709	-	ENSG00000260999.1	ENST00000562790.1	RP11-521L9.1	RP11-521L9.1-001	TMCO7	"hg19_refFlat_TANGO6:range=chr16:68877521-691175645'pad=0,hg19_refFlat_TANGO6:range=chr16:68877521-691175645'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20chr16:68951450-68992164"	NA	inner
CUST_39673_PI429285431	1.1825751	A	1.0951335	A	1.06248435659533	0	lncRNA	40613-1_{1..805}	n405302|NR_001435_3|lncRNA|Homosapiens||RefGeneNoncode|NR_001435_3||-1.1304400|-0.3176742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405302|NR_001435_3|lncRNA|Homosapiens||RefGeneNoncode|NR_001435_3||-1.1304400|-0.3176742	chr6	  4367056	  4367860	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1973_PI429285431	0.996024	A	1.3908327	A	0.760590223479621	0	lncRNA	1964-1_{1..3000}	"transcript_id ""ENST00000512241.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512241.1"" | genecode_v17"	chr4	172210626	172213625	-	ENSG00000248339.1	ENST00000512241.1	RP11-717H13.1	RP11-717H13.1-001	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10"	NA	inter
CUST_37149_PI429285431	0.91754127	A	0.9148121	A	1.00189350691522	0	lncRNA	38268-1_{1..1138}	n345587|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1136|NULL|-1.3876600|-0.3144291	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345587|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1136|NULL|-1.3876600|-0.3144291	chr3	 37864198	 37865335	+	NA	NA	NA	NA	ITGA9	NA	chr3:37854198-37861281	inter
CUST_48384_PI429285431	0.92643005	A	0.9621551	A	0.975541363282744	0	lncRNA	52237-1_{1..946}	hg19_lincRNAsTranscripts_TCONS_l2_00000485 range=chr1:111015165-111017588 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000485 range=chr1:111015165-111017588 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	111015165	111016110	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26266_PI429285431	1.7784458	A	1.0986469	A	1.60191644544204	0	lncRNA	27773-1_{1..3000}	lnc-HGF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-HGF-1:1	chr7	 81255430	 81258429	-	lnc-HGF-1	lnc-HGF-1:1	ENSG00000233491.2	AC010091.1	NA	NA	NA	inter
CUST_51219_PI429285431	2.7327285	A	2.520254	A	1.15867382942808	0	lncRNA	54837-1_{1..1059}	hg19_lincRNAsTranscripts_TCONS_l2_00008403 range=chr15:21145791-21148683 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008403 range=chr15:21145791-21148683 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 21145791	 21146849	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2241_PI429285431	0.9099276	A	0.91684496	A	0.99521672787649	0	lncRNA	2233-1_{1..511}	"transcript_id ""ENST00000509405.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509405.1"" | genecode_v17"	chr5	 87836665	 87837175	-	ENSG00000245526.3	ENST00000509405.1	LINC00461	LINC00461-014	NA	NA	NA	inter
CUST_4974_PI429285431	3.698135	P	3.8207636	P	0.918512589029769	0	lncRNA	4918-1_{1..840}	"transcript_id ""ENST00000557745.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557745.1"" | genecode_v17"	chr14	 97582692	 97583531	+	ENSG00000258393.1	ENST00000557745.1	RP11-907D1.2	RP11-907D1.2-001	NA	NA	NA	inter
LNCA_21_P0000969	0.92349744	A	0.9246236	A	0.999219709955871	0	lncRNA	ENST00000445070	XR_110510	XR_110510	NA	Hs.667602	XLOC_000180	NA	ENST00000445070	THC2627825	NA	"PREDICTED: Homo sapiens hypothetical LOC100507479 (LOC100507479), miscRNA [XR_110510]"	chr1:48285496-48285555	hs|1p33	Agilent_HUMAN_G3V2	ENST00000445070	ENST00000445070	chr1	 48285496	 48285555	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002728	0.9239654	A	0.9243046	A	0.999764912113843	0	lncRNA	ENST00000453361	NA	NA	NA	NA	XLOC_002593	NA	ENST00000453361	NA	NA	"BROAD Institute lincRNA (XLOC_002593), lincRNA [TCONS_00005497]"	chr3:18788816-18788875	hs|3p24.3	Agilent_HUMAN_G3V2	ENST00000453361	ENST00000453361	chr3	 18788816	 18788875	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18190_PI429285431	0.9131746	A	0.9146019	A	0.999011160253745	0	lncRNA	19926-1_{1..3000}	lnc-TCL1B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TCL1B-1:3	chr14	 96138308	 96141307	+	lnc-TCL1B-1	lnc-TCL1B-1:3	ENSG00000187621	TCL6	NA	NA	NA	inter
CUST_38767_PI429285431	0.89927715	A	0.8991845	A	1.00006422214843	0	lncRNA	39760-1_{1..2871}	n384375|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fko.2||-1.1246200|-0.3156325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384375|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fko.2||-1.1246200|-0.3156325	chr3	180425379	180428249	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29347_PI429285431	2.6827016	A	2.384592	A	1.22953226995885	0	lncRNA	31099-1_{1..1473}	n332601|AK025404|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000008678|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000008678|2.1611700|-0.0825375	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332601|AK025404|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000008678|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000008678|2.1611700|-0.0825375	chr7	100643193	100644665	+	NA	NA	NA	NA	MUC12	NA	chr7:100633193-100654666	inner
CUST_45454_PI429285431	10.9720955	P	11.275702	P	0.810224434978697	0	lncRNA	49870-1_{1..1714}	"gi|389565496|ref|NR_051968.1| Homo sapiens mitochondrial ribosomal protein S2 (MRPS2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|389565496|ref|NR_051968.1| Homo sapiens mitochondrial ribosomal protein S2 (MRPS2), transcript variant 3, non-coding RNA"	Chr9	138392477	138394190	+	51116	NR_051968.1	NA	NA	NA	NA	NA	inter
CUST_13860_PI429285431	4.803733	P	4.6700377	P	1.09710020341092	0	lncRNA	15504-1_{1..1261}	lnc-ZDHHC11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZDHHC11-1:1	chr5	   860310	   861570	-	lnc-ZDHHC11-1	lnc-ZDHHC11-1:1	XLOC_004697	linc-ZDHHC11	ZDHHC11	NA	chr5:850310-851101	inter
CUST_3609_PI429285431	0.9103516	A	0.9101608	A	1.0001322612278	0	lncRNA	3579-1_{1..557}	"transcript_id ""ENST00000420395.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420395.1"" | genecode_v17"	chr10	  7487520	  7488076	-	ENSG00000232591.1	ENST00000420395.1	RP5-1031D4.2	RP5-1031D4.2-001	NA	NA	NA	inter
CUST_36970_PI429285431	7.3674254	P	7.5406857	P	0.886836282206153	0	lncRNA	38117-1_{1..1306}	n345433|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_982|NULL|-1.6156500|-0.2959818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345433|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_982|NULL|-1.6156500|-0.2959818	chr1	 32510931	 32512236	+	NA	NA	NA	NA	KHDRBS1	NA	chr1:32500931-32509472	inter
CUST_12155_PI429285431	3.1783519	P	1.8174405	A	2.56847387585952	0	lncRNA	13755-1_{1..2584}	lnc-C5orf39-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf39-1:8	chr5	 43017176	 43019759	-	lnc-C5orf39-1	lnc-C5orf39-1:8	XLOC_004804	linc-SEPP1-1	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-95.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10"	NA	inter
CUST_29925_PI429285431	5.863711	P	5.4528327	P	1.32949495255928	0	lncRNA	31689-1_{1..292}	n334074|M34339|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195577|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195577|-1.0593300|-0.1591282	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334074|M34339|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195577|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195577|-1.0593300|-0.1591282	chr17	 38253596	 38253887	-	NA	NA	NA	NA	NR1D1	NA	chr17:38249037-38256973	inner
CUST_3421_PI429285431	3.1552217	P	2.9497771	A	1.15304162862236	0	lncRNA	3393-1_{1..2198}	"transcript_id ""ENST00000597935.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597935.1"" | genecode_v17"	chr9	 67017400	 67019597	-	ENSG00000182021.5	ENST00000597935.1	RP11-381O7.3	RP11-381O7.3-003	NA	NA	NA	inter
CUST_17831_PI429285431	7.0505376	P	7.4090157	P	0.779986954602083	0	lncRNA	19566-1_{1..679}	lnc-GINS2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GINS2-3:1	chr16	 85434472	 85435150	-	lnc-GINS2-3	lnc-GINS2-3:1	XLOC_012036	linc-FAM92B-5	NA	NA	NA	inter
CUST_31067_PI429285431	6.354636	P	6.3781834	P	0.983810665139827	0	lncRNA	32857-1_{1..537}	n337298|BC128524|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389889|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389889|-0.8747590|-0.0806788	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337298|BC128524|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389889|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389889|-0.8747590|-0.0806788	chr4	  1350359	  1350895	+	NA	NA	NA	NA	KIAA1530	NA	chr4:1341104-1361865	inner
CUST_17958_PI429285431	1.5076091	A	0.88960874	A	1.53474647897071	0	lncRNA	19689-1_{1..788}	lnc-LACTB-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LACTB-1:2	chr15	 63402315	 63403102	+	lnc-LACTB-1	lnc-LACTB-1:2	XLOC_011281	linc-LACTB	NA	NA	NA	inter
CUST_12064_PI429285431	2.3864295	A	2.1903257	A	1.14560031944241	0	lncRNA	13652-1_{1..630}	lnc-SOX1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOX1-4:1	chr13	112548586	112549215	+	lnc-SOX1-4	lnc-SOX1-4:1	XLOC_010503	linc-SOX1-1	NA	NA	NA	inter
CUST_16364_PI429285431	8.284355	P	9.101891	P	0.567410203760069	0	lncRNA	18062-1_{1..722}	lnc-OTUD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OTUD4-1:1	chr4	146124644	146125365	-	lnc-OTUD4-1	lnc-OTUD4-1:1	XLOC_004110	linc-OTUD4-1	NA	NA	NA	inter
CUST_9775_PI429285431	5.2027607	P	6.2601924	P	0.480486665868957	0	lncRNA	11292-1_{1..338}	lnc-IFRD2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IFRD2-1:2	chr3	 50304713	 50305050	-	lnc-IFRD2-1	lnc-IFRD2-1:2	XLOC_003123	linc-MON1A-2	GNAI2	NA	chr3:50294713-50296786	inter
CUST_22684_PI429285431	2.0515127	A	2.2108433	A	0.895440452407027	0	lncRNA	24267-1_{1..1194}	lnc-STAG1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STAG1-1:3	chr3	136580589	136581782	-	lnc-STAG1-1	lnc-STAG1-1:3	ENSG00000239213.1	RP11-85F14.5	NCK1	NA	chr3:136581050-136590879	inter
CUST_3947_PI429285431	0.9106941	A	0.9054476	A	1.00364321712338	0	lncRNA	3917-1_{1..1890}	"transcript_id ""ENST00000526131.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526131.1"" | genecode_v17"	chr11	 57811582	 57813471	-	ENSG00000255146.1	ENST00000526131.1	RP11-659P15.1	RP11-659P15.1-001	NA	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-27.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50"	NA	inner
CUST_47241_PI429285431	0.9004853	A	2.3244865	A	0.372677286715349	0	lncRNA	51315-1_{1..709}	"gi|310124502|ref|XR_109653.1| PREDICTED: Homo sapiens uncharacterized LOC100505664 (LOC100505664), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124502|ref|XR_109653.1| PREDICTED: Homo sapiens uncharacterized LOC100505664 (LOC100505664), misc_RNA"	Chr20	 23168612	 23169320	+	100505664	XR_109653.1	NA	NA	NA	NA	NA	inter
CUST_35194_PI429285431	0.91668135	A	0.9251813	A	0.994125605747823	0	lncRNA	36595-1_{1..666}	n342178|AF086421|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4665|NULL|-0.8176530|-0.1681947	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342178|AF086421|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4665|NULL|-0.8176530|-0.1681947	chr6	168775376	168776041	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9303_PI429285431	3.8479345	P	3.874197	P	0.981960910105882	0	lncRNA	10810-1_{1..747}	lnc-TMEM17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM17-1:1	chr2	 62688863	 62689609	-	lnc-TMEM17-1	lnc-TMEM17-1:1	XLOC_002116	linc-CCT4	NA	NA	NA	inter
LNCA_21_P0008465	0.91522455	A	0.905835	A	1.00652956537682	0	lncRNA	ENST00000555512	NA	NA	NA	NA	XLOC_011081	NA	ENST00000555512	NA	NA	"BROAD Institute lincRNA (XLOC_011081), lincRNA [TCONS_00022804]"	chr14:77542556-77542497	hs|14q24.3	Agilent_HUMAN_G3V2	ENST00000555512	ENST00000555512	chr14	 77542497	 77542556	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42550_PI429285431	2.3761506	A	3.3676572	A	0.502952269871389	0	lncRNA	45360-1_{1..72}	ENST00000363409 ncrna:snoRNA chromosome:GRCh37:14:101433389:101433460:1 gene:ENSG00000200279 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363409 ncrna:snoRNA chromosome:GRCh37:14:101433389:101433460:1 gene:ENSG00000200279 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101433389	101433460	+	ENSG00000200279	ENST00000363409	NA	NA	NA	NA	NA	inter
CUST_34027_PI429285431	0.8928076	A	0.8916458	A	1.00080562273418	0	lncRNA	35560-1_{1..1058}	n340845|BC033321|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3309|NULL|1.5543600|-0.2337390	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340845|BC033321|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3309|NULL|1.5543600|-0.2337390	chr6	 10932549	 10933606	-	NA	NA	NA	NA	SYCP2L	NA	chr6:10922549-10964322	inner
CUST_30202_PI429285431	0.9043038	A	0.90670866	A	0.998334466614079	0	lncRNA	31977-1_{1..212}	n335016|AJ488205|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248175|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248175|-0.8236220|-0.0628961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335016|AJ488205|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248175|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248175|-0.8236220|-0.0628961	chr11	 19372362	 19372573	+	NA	NA	NA	NA	NAV2	NA	chr11:19372271-19382574	inner
LNCA_21_P0001388	3.0524626	P	3.8930693	P	0.558408690708816	0	lncRNA	TCONS_00001208	NA	NA	NA	NA	XLOC_000474	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000474), lincRNA [TCONS_00001208]"	chr1:178631445-178631504	hs|1q25.2	Agilent_HUMAN_G3V2	TCONS_00001208	TCONS_00001208	chr1	178631445	178631504	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21757_PI429285431	0.90020025	A	0.89920795	A	1.00068804654277	0	lncRNA	23368-1_{1..712}	lnc-C4orf21-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C4orf21-3:1	chr4	113803174	113803885	-	lnc-C4orf21-3	lnc-C4orf21-3:1	ENSG00000251126.1	RP11-119H12.6	ANK2	NA	chr4:113793174-113813486	inner
LNCA_21_P0010529	1.6563525	A	0.9000275	A	1.68918225886366	0	lncRNA	TCONS_l2_00000291	NA	NA	NA	NA	XLOC_l2_000217	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000217), lincRNA [TCONS_l2_00000291]"	chr1:55354884-55354943	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_l2_00000291	TCONS_l2_00000291	chr1	 55354884	 55354943	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23054_PI429285431	1.1221459	A	0.9386595	A	1.13562490990269	0	lncRNA	24625-1_{1..860}	lnc-CDK12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK12-2:1	chr17	 37561733	 37562592	+	lnc-CDK12-2	lnc-CDK12-2:1	ENSG00000266469.1	CTB-131K11.1	FBXL20	NA	chr17:37551733-37557909	inner
CUST_42271_PI429285431	7.418178	P	7.6369877	P	0.85927409080175	0	lncRNA	44881-1_{1..128}	ENST00000408449 ncrna:snoRNA chromosome:GRCh37:15:69617632:69617759:-1 gene:ENSG00000221376 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408449 ncrna:snoRNA chromosome:GRCh37:15:69617632:69617759:-1 gene:ENSG00000221376 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 69617632	 69617759	-	ENSG00000221376	ENST00000408449	NA	NA	PAQR5	NA	chr15:69607632-69627759	inner
CUST_35558_PI429285431	5.1354876	P	4.996506	P	1.10112755432875	0	lncRNA	36972-1_{1..384}	n342688|AF086476|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5190|NULL|-0.8761450|-0.3189831	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n342688|AF086476|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5190|NULL|-0.8761450|-0.3189831	chr17	 28937714	 28938097	+	NA	NA	NA	NA	C17orf42	NA	chr17:29226001-29233286	inner
CUST_15552_PI429285431	0.90503526	A	0.8961166	A	1.00620109168563	0	lncRNA	17237-1_{1..693}	lnc-FLRT2-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FLRT2-2:10	chr14	 86595840	 86596532	+	lnc-FLRT2-2	lnc-FLRT2-2:10	XLOC_010891	linc-GPR65-6	NA	NA	NA	inter
CUST_12940_PI429285431	0.8915027	A	0.8880984	A	1.00236246718498	0	lncRNA	14568-1_{1..475}	lnc-PRB1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRB1-1:6	chr12	 11587926	 11588400	-	lnc-PRB1-1	lnc-PRB1-1:6	XLOC_010018	linc-PRB2-1	NA	NA	NA	inter
CUST_23709_PI429285431	1.5626576	A	1.462289	A	1.0720473292639	0	lncRNA	25274-1_{1..268}	lnc-ZIC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZIC1-2:1	chr3	147105106	147105373	+	lnc-ZIC1-2	lnc-ZIC1-2:1	ENSG00000241202.1	ZIC4-AS1	ZIC4	NA	chr3:147103835-147115240	inner
LNCA_21_P0007398	6.5925593	P	6.558733	P	1.02372363702493	0	lncRNA	THC2712687	NA	NA	NA	NA	XLOC_009549	NA	NA	THC2712687	NA	"BROAD Institute lincRNA (XLOC_009549), lincRNA [TCONS_00019755]"	chr11:110962967-110962908	hs|11q23.1	Agilent_HUMAN_G3V2	THC2712687	THC2712687	chr11	110962908	110962967	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37943_PI429285431	6.7940993	P	6.5480723	P	1.18593669397751	0	lncRNA	39033-1_{1..2032}	n346490|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2040|NULL|-1.3579100|-0.2200286	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n346490|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2040|NULL|-1.3579100|-0.2200286	chr3	 72146406	 72148437	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43518_PI429285431	0.9068711	A	0.90075296	A	1.00424977628729	0	lncRNA	48302-2_{3001..6000}	"gi|282165815|ref|NR_030761.1| Homo sapiens transmembrane emp24 protein transport domain containing 5 (TMED5), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|282165815|ref|NR_030761.1| Homo sapiens transmembrane emp24 protein transport domain containing 5 (TMED5), transcript variant 3, non-coding RNA"	Chr1	 93618299	 93621298	-	50999	NR_030761.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80"	NA	inter
CUST_16748_PI429285431	0.9270809	A	0.9291309	A	0.998580057353743	0	lncRNA	18455-1_{1..231}	lnc-CPE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPE-1:1	chr4	166424788	166425018	+	lnc-CPE-1	lnc-CPE-1:1	XLOC_003769	linc-TLL1-2	CPE	NA	chr4:166414788-166419482	inter
CUST_41511_PI429285431	4.4477935	P	4.863161	P	0.749828465317001	0	lncRNA	42738-1_{1..80}	ENST00000584349 ncrna:miRNA chromosome:GRCh37:8:143257700:143257779:1 gene:ENSG00000265247 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584349 ncrna:miRNA chromosome:GRCh37:8:143257700:143257779:1 gene:ENSG00000265247 gene_biotype:miRNA transcript_biotype:miRNA	chr8	143257700	143257779	+	ENSG00000265247	ENST00000584349	NA	NA	NA	NA	NA	inter
CUST_8196_PI429285431	1.4320784	A	1.4584085	A	0.981914899687549	0	lncRNA	9793-2_{3001..3808}	lnc-AC021066.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC021066.1-3:2	chr12	 53010348	 53011155	+	lnc-AC021066.1-3	lnc-AC021066.1-3:2	ENSG00000248214	ENSG00000257495.1	KRT73	"hg19_refFlat_KRT73:range=chr12:53001980-530123085'pad=0,hg19_refFlat_KRT73:range=chr12:53001980-530123085'pad=0 3'pad=0 strand=- repeatMasking=none,-100.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_KRT71:range=chr12:52938316-529468615'pad=0,hg19_refFlat_KRT71:range=chr12:52938316-529468615'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_KRT79:range=chr12:53215656-532280445'pad=0,hg19_refFlat_KRT79:range=chr12:53215656-532280445'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_KRT72:range=chr12:52979766-529952365'pad=0,hg19_refFlat_KRT72:range=chr12:52979766-529952365'pad=0 3'pad=0 strand=- repeatMasking=none,-94.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_KRT76:range=chr12:53162497-531710755'pad=0,hg19_refFlat_KRT76:range=chr12:53162497-531710755'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_KRT4:range=chr12:53200853-532078425'pad=0,hg19_refFlat_KRT4:range=chr12:53200853-532078425'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_KRT2:range=chr12:53038803-530459265'pad=0,hg19_refFlat_KRT2:range=chr12:53038803-530459265'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_KRT74:range=chr12:52960753-529675615'pad=0,hg19_refFlat_KRT74:range=chr12:52960753-529675615'pad=0 3'pad=0 strand=- repeatMasking=none,-95.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chr12:53001354-53012343"	NA	inner
CUST_52111_PI429285431	3.5308452	P	3.6129766	P	0.944660997790191	0	lncRNA	55636-1_{1..368}	hg19_lincRNAsTranscripts_TCONS_l2_00018313 range=chr22:18782044-18830912 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018313 range=chr22:18782044-18830912 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 18782044	 18782411	-	NA	NA	NA	NA	LOC100132900	NA	chr22:18781949-18832444	inter
CUST_16026_PI429285431	6.057267	P	6.3818755	P	0.798515047687657	0	lncRNA	17723-1_{1..241}	lnc-NR2C1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR2C1-1:1	chr12	 95321793	 95322033	-	lnc-NR2C1-1	lnc-NR2C1-1:1	XLOC_010161	linc-TMCC3	NA	NA	NA	inter
CUST_44814_PI429285431	4.7563815	P	4.731941	P	1.01708517385871	0	lncRNA	49348-1_{1..2200}	"gi|325652031|ref|NR_037938.1| Homo sapiens high mobility group AT-hook 1 pseudogene 7 (HMGA1P7), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|325652031|ref|NR_037938.1| Homo sapiens high mobility group AT-hook 1 pseudogene 7 (HMGA1P7), non-coding RNA"	Chr6	134435100	134437299	-	387065	NR_037938.1	NA	NA	NA	NA	NA	inter
CUST_15214_PI429285431	0.8910028	A	0.8871767	A	1.00265557022415	0	lncRNA	16884-1_{1..279}	lnc-ANP32D-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANP32D-1:2	chr12	 48852968	 48853246	+	lnc-ANP32D-1	lnc-ANP32D-1:2	XLOC_009736	linc-ANP32D-1	NA	NA	NA	inter
CUST_35256_PI429285431	10.13779	P	9.904052	P	1.1758776861481	0	lncRNA	36656-1_{1..391}	n342259|CR608962|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4749|NULL|-1.2097300|-0.3467325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342259|CR608962|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4749|NULL|-1.2097300|-0.3467325	chr1	 42507952	 42508342	+	NA	NA	NA	NA	HIVEP3	NA	chr1:42497952-42501596	inter
CUST_17076_PI429285431	1.1868482	A	0.9195281	A	1.20357004017904	0	lncRNA	18785-1_{1..1197}	lnc-UBL5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-UBL5-1:2	chr19	  9912598	  9913794	+	lnc-UBL5-1	lnc-UBL5-1:2	XLOC_012959	linc-UBL5-1	FBXL12	NA	chr19:9920943-9923021	inter
CUST_32671_PI429285431	0.9074018	A	0.9129199	A	0.996182449985531	0	lncRNA	34322-1_{1..501}	n339298|BC050287|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1730|NULL|-1.1158000|-0.3954947	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339298|BC050287|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1730|NULL|-1.1158000|-0.3954947	chr16	 78048579	 78049079	-	NA	NA	NA	NA	CLEC3A	NA	chr16:78056443-78065998	inner
CUST_32453_PI429285431	1.5590008	A	2.6450524	A	0.471048788934288	0	lncRNA	34124-1_{1..1031}	n339051|BC041921|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1480|NULL|-0.2738280|-0.3523743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339051|BC041921|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1480|NULL|-0.2738280|-0.3523743	chr2	184044985	184046015	-	NA	NA	NA	NA	NA	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70"	NA	inter
CUST_40024_PI429285431	5.683407	P	5.7721686	P	0.940329575643082	0	lncRNA	40882-1_{1..1844}	n407187|NR_026648|lncRNA|Homosapiens||RefGeneNoncode|NR_026648||4.5824900|-0.2316240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407187|NR_026648|lncRNA|Homosapiens||RefGeneNoncode|NR_026648||4.5824900|-0.2316240	chr6	  3118925	  3120768	+	NA	NA	NA	NA	BPHL	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90chr6:3118926-3153432"	NA	inter
CUST_48691_PI429285431	3.7537737	P	4.50632	P	0.593555031186629	0	lncRNA	52532-1_{1..1576}	hg19_lincRNAsTranscripts_TCONS_l2_00013880 range=chr2:107107337-107124389 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013880 range=chr2:107107337-107124389 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	107107337	107108912	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8492_PI429285431	3.7170486	P	4.044755	P	0.796802235425774	0	lncRNA	10056-1_{1..1538}	lnc-NUP188-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUP188-1:1	chr9	131708828	131710365	+	lnc-NUP188-1	lnc-NUP188-1:1	ENSG00000250965	ENST00000515348	NUP188	"hg19_refFlat_DOLK:range=chr9:131707966-1317095825'pad=0,hg19_refFlat_DOLK:range=chr9:131707966-1317095825'pad=0 3'pad=0 strand=- repeatMasking=none,-105.20chr9:131709977-131719864"	NA	inner
CUST_6170_PI429285431	4.481559	P	4.1839285	P	1.22912402629428	0	lncRNA	6094-1_{1..847}	"transcript_id ""ENST00000593316.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593316.1"" | genecode_v17"	chr18	 39766641	 39767487	+	ENSG00000267586.2	ENST00000593316.1	RP11-21F16.1	RP11-21F16.1-011	NA	NA	NA	inter
CUST_41126_PI429285431	0.90035343	A	0.89534056	A	1.00348070032443	0	lncRNA	41900-1_{1..114}	ENST00000576828 ncrna:miRNA chromosome:GRCh37:HSCHR3_1_CTG2_1:151352138:151352251:1 gene:ENSG00000262230 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000576828 ncrna:miRNA chromosome:GRCh37:HSCHR3_1_CTG2_1:151352138:151352251:1 gene:ENSG00000262230 gene_biotype:miRNA transcript_biotype:miRNA	chrHSCHR3_1_CTG2_1	151352138	151352251	+	ENSG00000262230	ENST00000576828	NA	NA	NA	NA	NA	Unknown
CUST_4660_PI429285431	0.9034435	A	0.90486777	A	0.999013258415109	0	lncRNA	4606-1_{1..382}	"transcript_id ""ENST00000458480.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458480.2"" | genecode_v17"	chr13	 81824573	 81824954	+	ENSG00000229309.2	ENST00000458480.2	RP11-452B18.2	RP11-452B18.2-001	NA	NA	NA	inter
CUST_16401_PI429285431	0.9142351	A	0.90886635	A	1.00372826668576	0	lncRNA	18097-1_{1..285}	lnc-PDE6H-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE6H-2:1	chr12	 15052108	 15052392	+	lnc-PDE6H-2	lnc-PDE6H-2:1	XLOC_009673	linc-PDE6H-2	NA	NA	NA	inter
CUST_21940_PI429285431	0.9158304	A	0.968748	A	0.963984864479748	0	lncRNA	23548-1_{1..663}	lnc-PANK3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PANK3-5:1	chr5	167380397	167381059	-	lnc-PANK3-5	lnc-PANK3-5:1	ENSG00000253660.1	CTC-353G13.1	ODZ2	NA	chr5:167370397-167390474	inner
CUST_29126_PI429285431	1.0491331	A	1.0023286	A	1.03297439955572	0	lncRNA	30864-1_{1..354}	n326629|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021917|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021917|-0.9978520|-0.2962247	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326629|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021917|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021917|-0.9978520|-0.2962247	chr1	 46694081	 46694434	+	NA	NA	NA	NA	POMGNT1	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20chr1:46684081-46685977"	NA	inner
CUST_11654_PI429285431	0.9133779	A	0.9152526	A	0.998701400891107	0	lncRNA	13231-1_{1..266}	lnc-GBE1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GBE1-6:1	chr3	 83828052	 83828317	-	lnc-GBE1-6	lnc-GBE1-6:1	XLOC_003172	linc-GBE1-6	NA	NA	NA	inter
CUST_8424_PI429285431	0.906485	A	0.9080101	A	0.998943439788133	0	lncRNA	9996-1_{1..3000}	lnc-TSPYL6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSPYL6-1:1	chr2	 54352856	 54355855	-	lnc-TSPYL6-1	lnc-TSPYL6-1:1	ENSG00000249397	ENST00000512963	ACYP2	"hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr2:54342856-54363753"	NA	inner
CUST_31649_PI429285431	3.1839898	A	2.6010566	A	1.49789157709569	0	lncRNA	33400-1_{1..1206}	n338171|BC009388|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|560|NULL|-0.7554910|-0.1785781	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338171|BC009388|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|560|NULL|-0.7554910|-0.1785781	chr22	 46451619	 46452824	-	NA	NA	NA	NA	C22orf26	NA	chr22:46446339-46450024	inter
LNCA_21_P0002229	0.9214982	A	0.9469012	A	0.982546097437643	0	lncRNA	TCONS_00003716	NA	NA	NA	NA	XLOC_001504	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001504), lincRNA [TCONS_00003716]"	chr2:65958426-65958485	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00003716	TCONS_00003716	chr2	 65958426	 65958485	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26616_PI429285431	11.599455	P	11.873251	P	0.827140319490512	0	lncRNA	28119-1_{1..464}	lnc-AK1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AK1-1:2	chr9	130647465	130647928	-	lnc-AK1-1	lnc-AK1-1:2	ENSG00000257524.1	RP11-203J24.9	AK1	NA	chr9:130637465-130640022	inner
CUST_40726_PI429285431	2.6434317	A	2.3762145	A	1.20348419879397	0	lncRNA	41460-1_{1..1880}	n410316|NR_037181_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037181_5||-0.7784710|-0.2150399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410316|NR_037181_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037181_5||-0.7784710|-0.2150399	chr6	   800472	   802351	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33544_PI429285431	0.91614544	A	0.9120341	A	1.00285382816596	0	lncRNA	35112-1_{1..2202}	n340293|BC043280|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2754|NULL|-1.1970200|-0.3419516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n340293|BC043280|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2754|NULL|-1.1970200|-0.3419516	chr4	185973049	185975250	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36646_PI429285431	1.5649587	A	2.2738848	A	0.611775357085234	0	lncRNA	37836-1_{1..1061}	n345140|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_689|NULL|-1.3435500|-0.3130303	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345140|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_689|NULL|-1.3435500|-0.3130303	chr11	 27238580	 27239640	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12177_PI429285431	3.6712046	P	3.6399822	P	1.0218775990676	0	lncRNA	13777-1_{1..1608}	lnc-AC092031.1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092031.1-1:8	chr7	 96285769	 96287376	-	lnc-AC092031.1-1	lnc-AC092031.1-1:8	XLOC_006529	linc-SLC25A13	NA	NA	NA	inter
CUST_14247_PI429285431	0.9123595	A	0.9019013	A	1.00727540996889	0	lncRNA	15906-1_{1..3000}	lnc-EXOSC8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-EXOSC8-2:1	chr13	 38122638	 38125637	+	lnc-EXOSC8-2	lnc-EXOSC8-2:1	XLOC_010349	linc-UFM1-3	NA	NA	NA	inter
CUST_51355_PI429285431	6.0599713	P	5.940608	P	1.08625536311177	0	lncRNA	54951-1_{1..647}	hg19_lincRNAsTranscripts_TCONS_l2_00008789 range=chr15:84749041-84773578 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008789 range=chr15:84749041-84773578 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 84749041	 84749687	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28791_PI429285431	0.9123749	A	1.1385242	A	0.854913700967449	0	lncRNA	30499-1_{1..407}	n326198|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099052|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099052|-1.3304500|-0.5127372	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326198|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099052|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099052|-1.3304500|-0.5127372	chr1	224341204	224341610	+	NA	NA	NA	NA	FBXO28	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.54;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30chr1:224331204-224349749"	NA	inter
CUST_4224_PI429285431	7.27534	P	7.7282076	P	0.730589234333251	0	lncRNA	4183-1_{1..534}	"transcript_id ""ENST00000538025.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000538025.1"" | genecode_v17"	chr12	 34302774	 34303307	+	ENSG00000255628.1	ENST00000538025.1	RP11-313F23.3	RP11-313F23.3-001	NA	NA	NA	inter
CUST_37096_PI429285431	0.9040919	A	0.8993972	A	1.00325941845858	0	lncRNA	38221-1_{1..671}	n345539|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1088|NULL|-1.3432000|-0.4179080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345539|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1088|NULL|-1.3432000|-0.4179080	chr2	111450095	111450765	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50112_PI429285431	0.9037319	A	0.9058836	A	0.998509666862644	0	lncRNA	53842-1_{1..2445}	hg19_lincRNAsTranscripts_TCONS_l2_00028800 range=chr9:69065509-69112507 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028800 range=chr9:69065509-69112507 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69065509	 69067953	+	NA	NA	NA	NA	LOC100507370	NA	chr9:69065490-69089939	inter
CUST_45593_PI429285431	1.9997239	A	2.0444136	A	0.969498317671117	0	lncRNA	49982-1_{1..866}	"gi|310120498|ref|XR_110401.1| PREDICTED: Homo sapiens uncharacterized LOC100506769 (LOC100506769), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310120498|ref|XR_110401.1| PREDICTED: Homo sapiens uncharacterized LOC100506769 (LOC100506769), misc_RNA"	Chr10	 50504495	 50505360	-	100506769	XR_110401.2	NA	NA	NA	NA	NA	inter
CUST_17837_PI429285431	0.90644956	A	0.91314876	A	0.995367232932567	0	lncRNA	19572-1_{1..359}	lnc-UBA5-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBA5-1:5	chr3	132551502	132551860	+	lnc-UBA5-1	lnc-UBA5-1:5	XLOC_002829	linc-TMEM108	NA	NA	NA	inter
CUST_6077_PI429285431	0.9029995	A	0.9061976	A	0.99778570118648	0	lncRNA	6001-1_{1..586}	"transcript_id ""ENST00000583840.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583840.1"" | genecode_v17"	chr18	  6929250	  6929835	-	ENSG00000265933.1	ENST00000583840.1	LINC00668	LINC00668-008	LAMA1	NA	chr18:6926973-6939835	inter
CUST_37623_PI429285431	18.505842	P	18.471525	P	1.02407189262582	0	lncRNA	38720-1_{1..396}	n346101|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1651|NULL|-1.2180600|-0.3016361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346101|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1651|NULL|-1.2180600|-0.3016361	chrX	108297345	108297740	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3285195	1.1587065	A	0.9159839	A	1.18322349081597	0	lncRNA	XR_109821	XR_109821	XR_109821	100507012	Hs.128612	LOC100507012	uncharacterized LOC100507012	ENST00000510795	THC2686821	NA	"PREDICTED: Homo sapiens hypothetical LOC100507012 (LOC100507012), miscRNA [XR_109821]"	chr4:95665017-95664958	hs|4q22.3	Agilent_HUMAN_G3V2	XR_109821	XR_109821	chr4	 95664958	 95665017	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009936	1.1894543	A	2.1669407	A	0.507863817974397	0	lncRNA	TCONS_00028110	NA	NA	NA	NA	XLOC_013465	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013465), lincRNA [TCONS_00028110]"	chr20:12947846-12948234	hs|20p12.1	Agilent_HUMAN_G3V2	TCONS_00028110	TCONS_00028110	chr20	 12947846	 12948234	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008906	0.9300307	A	0.9150497	A	1.01043813913454	0	lncRNA	THC2662756	NA	NA	NA	NA	XLOC_011648	NA	NA	THC2662756	NA	"BROAD Institute lincRNA (XLOC_011648), lincRNA [TCONS_00024332]"	chr16:013352229-013352288	hs|16p13.12	Agilent_HUMAN_G3V2	THC2662756	THC2662756	chr16	 13352229	 13352288	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51380_PI429285431	9.541671	P	9.083322	P	1.37396856772195	0	lncRNA	54974-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00009371 range=chr15:101087837-101099853 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009371 range=chr15:101087837-101099853 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	101087837	101090836	-	NA	NA	NA	NA	CERS3	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60chr15:101077837-101084925"	NA	inter
CUST_14762_PI429285431	0.9171354	A	0.9207222	A	0.9975169076794	0	lncRNA	16423-1_{1..302}	lnc-ZDHHC17-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZDHHC17-3:1	chr12	 77407421	 77407722	+	lnc-ZDHHC17-3	lnc-ZDHHC17-3:1	XLOC_009811	linc-NAV3-3	E2F7	NA	chr12:77415026-77417562	inter
CUST_393_PI429201921	5.3159146	P	5.5931273	P	0.825183740720277	0	lncRNA	247-3_{6001..9000}	TC01004143.hg.1	TCONS_l2_00000051-XLOC_l2_000033 // Broad TUCP // linc-C1orf93 chr1:+:2499253-2508846 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:2499253-2508846	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00000051-XLOC_l2_000033	linc-C1orf93	chr1	  2499253	  2508846	+	NA	NA	NA	NA	NFIA	NA	chr1:61704666-61729182	Unknown
CUST_21362_PI429285431	3.2453365	P	3.5913012	P	0.786781696167708	0	lncRNA	22985-1_{1..478}	lnc-KLHL25-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL25-10:1	chr15	 86859961	 86860438	-	lnc-KLHL25-10	lnc-KLHL25-10:1	ENSG00000260125.1	RP11-31E22.1	AGBL1	NA	chr15:86849961-86870404	inner
CUST_46131_PI429285431	1.3570416	A	1.6751577	A	0.802116613911773	0	lncRNA	50387-1_{1..354}	"gi|397139467|ref|XR_158872.1| PREDICTED: Homo sapiens uncharacterized LOC100128895 (LOC100128895), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139467|ref|XR_158872.1| PREDICTED: Homo sapiens uncharacterized LOC100128895 (LOC100128895), misc_RNA"	NA	NA	NA	NA	NA	XR_158872.1	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00"	NA	Unknown
CUST_50322_PI429285431	0.89879316	A	0.90163225	A	0.998034027831027	0	lncRNA	54041-1_{1..965}	hg19_lincRNAsTranscripts_TCONS_l2_00029022 range=chr9:128003896-128023167 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029022 range=chr9:128003896-128023167 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	128003896	128004860	+	NA	NA	NA	NA	RABEPK	NA	chr9:127993896-127996438	inter
CUST_27311_PI429285431	0.8912744	A	0.8986516	A	0.994899566230058	0	lncRNA	28871-1_{1..732}	n324465|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041322|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041322|-1.4394400|-0.5634164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324465|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041322|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041322|-1.4394400|-0.5634164	chr6	 81209891	 81210622	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41652_PI429285431	0.9128105	A	0.92707556	A	0.990160937316448	0	lncRNA	43068-1_{1..73}	ENST00000577722 ncrna:miRNA chromosome:GRCh37:13:51922703:51922775:-1 gene:ENSG00000266072 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577722 ncrna:miRNA chromosome:GRCh37:13:51922703:51922775:-1 gene:ENSG00000266072 gene_biotype:miRNA transcript_biotype:miRNA	chr13	 51922703	 51922775	-	ENSG00000266072	ENST00000577722	NA	NA	SERPINE3	NA	chr13:51915168-51932775	inner
CUST_5520_PI429285431	10.389944	P	10.506839	P	0.922170231438397	0	lncRNA	5451-1_{1..744}	"transcript_id ""ENST00000564193.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564193.1"" | genecode_v17"	chr16	 47038424	 47039167	+	ENSG00000259821.1	ENST00000564193.1	RP11-169E6.4	RP11-169E6.4-001	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-65.00"	NA	inter
CUST_39958_PI429285431	2.5654917	A	3.3015406	P	0.600381363533167	0	lncRNA	40829-2_{3001..3653}	n407001|NR_024498|lncRNA|Homosapiens||RefGeneNoncode|NR_024498||-0.0763735|-0.1678858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407001|NR_024498|lncRNA|Homosapiens||RefGeneNoncode|NR_024498||-0.0763735|-0.1678858	chr1	 26149444	 26150096	-	NA	NA	NA	NA	FAM54B	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr1:26146397-26159433"	NA	inner
CUST_7882_PI429285431	0.89456	A	0.9001228	A	0.99615158506646	0	lncRNA	9501-1_{1..1951}	lnc-DAD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DAD1-2:1	chr14	 22951842	 22953792	-	lnc-DAD1-2	lnc-DAD1-2:1	ENSG00000251002	AE000661.37	NA	NA	NA	inter
CUST_30263_PI429285431	3.1707072	P	2.7503474	A	1.33826126797779	0	lncRNA	32038-1_{1..303}	n335142|AY254341|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251238|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251238|1.5682300|-0.1796876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335142|AY254341|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251238|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251238|1.5682300|-0.1796876	chr21	 35169861	 35170163	+	NA	NA	NA	NA	ITSN1	NA	chr21:35159861-35193410	inner
CUST_17892_PI429285431	0.8977825	A	0.89839625	A	0.999574671395798	0	lncRNA	19625-1_{1..291}	lnc-RP11-382J12.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-382J12.1.1-1:1	chr8	 71702316	 71702606	+	lnc-RP11-382J12.1.1-1	lnc-RP11-382J12.1.1-1:1	XLOC_006836	linc-KCNB2-6	NA	NA	NA	inter
CUST_8703_PI429285431	1.4984518	A	2.0948663	A	0.661395667390719	0	lncRNA	10249-1_{1..576}	lnc-CRYGS-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYGS-1:4	chr3	186175874	186176449	-	lnc-CRYGS-1	lnc-CRYGS-1:4	ENSG00000224406	XLOC_003358	NA	NA	NA	inter
LNCA_21_P0005455	4.9753423	P	5.04453	P	0.953174525663509	0	lncRNA	TCONS_00013658	NA	NA	NA	NA	XLOC_006320	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006320), lincRNA [TCONS_00013658]"	chr7:158762994-158763053	hs|7q36.3	Agilent_HUMAN_G3V2	TCONS_00013658	TCONS_00013658	chr7	158762994	158763053	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17995_PI429285431	2.7211561	A	3.9461677	P	0.427794073146107	0	lncRNA	19729-1_{1..370}	lnc-UMODL1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UMODL1-4:3	chr21	 43194727	 43195096	+	lnc-UMODL1-4	lnc-UMODL1-4:3	XLOC_013950	linc-UMODL1-2	RIPK4	NA	chr21:43184727-43187249	inter
CUST_4651_PI429285431	0.90300894	A	0.9024108	A	1.00041468501265	0	lncRNA	4597-1_{1..868}	"transcript_id ""ENST00000597518.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597518.1"" | genecode_v17"	chr13	 75130673	 75131540	+	ENSG00000236678.2	ENST00000597518.1	LINC00347	LINC00347-004	NA	NA	NA	inter
CUST_46493_PI429285431	4.1378145	P	4.6683693	P	0.692288457756046	0	lncRNA	50687-1_{1..456}	"gi|338827621|ref|NR_040055.1| Homo sapiens IQCH antisense RNA 1 (IQCH-AS1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338827621|ref|NR_040055.1| Homo sapiens IQCH antisense RNA 1 (IQCH-AS1), transcript variant 4, non-coding RNA"	Chr15	 67807258	 67807713	-	100506686	NR_040055.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10"	NA	inter
LNCA_21_P0006868	1.5436244	A	0.9219947	A	1.53861225017368	0	lncRNA	TCONS_00018191	NA	NA	NA	NA	XLOC_008474	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008474), lincRNA [TCONS_00018191]"	chr10:45086315-45086374	hs|10q11.21	Agilent_HUMAN_G3V2	TCONS_00018191	TCONS_00018191	chr10	 45086315	 45086374	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36129_PI429285431	0.92731327	A	0.91025007	A	1.01189752815166	0	lncRNA	37416-2_{3001..6000}	n344703|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_252|NULL|-1.2792600|-0.3596951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344703|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_252|NULL|-1.2792600|-0.3596951	chr2	186900622	186903621	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
CUST_17554_PI429285431	4.734738	P	4.72898	P	1.0039991166773	0	lncRNA	19282-1_{1..614}	lnc-C20orf197-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf197-1:1	chr20	 59049964	 59050577	+	lnc-C20orf197-1	lnc-C20orf197-1:1	XLOC_013592	linc-CDH4-3	NA	NA	NA	inter
CUST_26756_PI429285431	10.700741	P	10.689273	P	1.0079806891402	0	lncRNA	28254-1_{1..388}	n323806|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058408|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058408|-1.1626700|-0.3217179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323806|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058408|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058408|-1.1626700|-0.3217179	chrX	134214405	134214792	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23907_PI429285431	4.854607	P	5.212431	P	0.780340671171978	0	lncRNA	25465-1_{1..470}	lnc-CXXC11-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CXXC11-4:4	chr2	242901010	242901479	+	lnc-CXXC11-4	lnc-CXXC11-4:4	ENSG00000233806.2	AC131097.3	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60"	NA	inter
CUST_35799_PI429285431	8.19963	P	8.2172985	P	0.987827816756573	0	lncRNA	37208-2_{3001..6000}	n344478|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_26|NULL|-1.2862300|-0.2792485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344478|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_26|NULL|-1.2862300|-0.2792485	chr14	101295452	101298451	+	NA	NA	NA	NA	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10"	NA	inter
CUST_17880_PI429285431	3.5392122	P	3.8355138	P	0.814337305463224	0	lncRNA	19617-1_{1..578}	lnc-RGMA-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGMA-2:3	chr15	 93331194	 93331771	-	lnc-RGMA-2	lnc-RGMA-2:3	XLOC_011586	linc-FAM174B	NA	NA	NA	inter
CUST_19814_PI429285431	0.9133763	A	0.9206378	A	0.994979357518178	0	lncRNA	21471-1_{1..442}	lnc-MNT-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MNT-1:2	chr17	  2280653	  2281094	-	lnc-MNT-1	lnc-MNT-1:2	ENSG00000263345.1	RP1-59D14.5	MNT	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chr17:2287354-2291040"	NA	inner
CUST_36758_PI429285431	0.91303325	A	0.91881514	A	0.996000319363199	0	lncRNA	37931-1_{1..415}	n345238|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_787|NULL|-1.3178400|-0.1050188	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345238|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_787|NULL|-1.3178400|-0.1050188	chr13	110675326	110675740	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36409_PI429285431	0.8933547	A	0.89583606	A	0.998281530574438	0	lncRNA	37627-1_{1..536}	n344926|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_475|NULL|-1.3488400|-0.3970790	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344926|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_475|NULL|-1.3488400|-0.3970790	chr6	126497758	126498293	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00807374	0.92165333	A	1.6487927	A	0.6041005603923	0	lncRNA	TCONS_l2_00020391	NA	NA	NA	NA	XLOC_l2_010558	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010558), lincRNA [TCONS_l2_00020391]"	chr4:6678116-6678175	hs|4p16.1	Agilent_HUMAN_G3V2	TCONS_l2_00020391	TCONS_l2_00020391	chr4	  6678116	  6678175	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9614_PI429285431	1.8049669	A	1.863134	A	0.960483609598442	0	lncRNA	11130-1_{1..1859}	lnc-HDAC2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HDAC2-2:2	chr6	113970606	113972464	-	lnc-HDAC2-2	lnc-HDAC2-2:2	XLOC_005810	linc-LAMA4-2	NA	NA	NA	inter
LNCA_21_P0009416	6.090439	P	6.2320724	P	0.906492255716658	0	lncRNA	TCONS_00026159	NA	NA	NA	NA	XLOC_012572	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012572), lincRNA [TCONS_00026159]"	chr17:72103051-72092841	hs|17q25.1	Agilent_HUMAN_G3V2	TCONS_00026159	TCONS_00026159	chr17	 72092841	 72103051	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37014_PI429285431	2.1939766	A	2.403828	A	0.864626284673603	0	lncRNA	38154-1_{1..3000}	n345471|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1020|NULL|-1.3531000|-0.3454455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345471|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1020|NULL|-1.3531000|-0.3454455	chr1	167388163	167391162	+	NA	NA	NA	NA	POU2F1	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr1:167378163-167396582"	NA	inner
LNCA_21_P0014479	8.414374	P	6.9506063	P	2.75827767529243	0	lncRNA	ENST00000488720	XR_110014	XR_110014	NA	Hs.613914	LOC100506906	NA	ENST00000488720	THC2502442	NA	"PREDICTED: Homo sapiens hypothetical LOC100506906 (LOC100506906), miscRNA [XR_110014]"	chr3:58148353-58148294	hs|3p14.3	Agilent_HUMAN_G3V2	ENST00000488720	ENST00000488720	chr3	 58148294	 58148353	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12081_PI429285431	2.706437	A	2.7004986	A	1.00412466834279	0	lncRNA	13673-1_{1..1588}	lnc-LTBP3-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LTBP3-2:4	chr11	 65267107	 65268694	-	lnc-LTBP3-2	lnc-LTBP3-2:4	XLOC_009474	linc-SLC25A45-5	NA	NA	NA	inter
CUST_16035_PI429285431	6.126588	P	5.9725323	P	1.11269307894148	0	lncRNA	17733-1_{1..745}	lnc-GYG2P1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GYG2P1-1:1	chrY	 14775292	 14776036	-	lnc-GYG2P1-1	lnc-GYG2P1-1:1	XLOC_008323	linc-AMELY-6	NA	NA	NA	inter
CUST_41186_PI429285431	0.92072666	A	0.93082845	A	0.993022429819415	0	lncRNA	42038-1_{1..84}	ENST00000390204 ncrna:miRNA chromosome:GRCh37:X:49774330:49774413:1 gene:ENSG00000211538 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390204 ncrna:miRNA chromosome:GRCh37:X:49774330:49774413:1 gene:ENSG00000211538 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 49774330	 49774413	+	ENSG00000211538	ENST00000390204	NA	NA	CLCN5	NA	chrX:49764330-49784413	inner
CUST_25452_PI429285431	0.911331	A	0.917952	A	0.995421187389337	0	lncRNA	26982-1_{1..610}	lnc-ASB5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASB5-1:1	chr4	177241296	177241905	-	lnc-ASB5-1	lnc-ASB5-1:1	ENSG00000248980.1	RP11-87F15.2	SPCS3	"hg19_refFlat_SPCS3:range=chr4:177241228-1772494815'pad=0,hg19_refFlat_SPCS3:range=chr4:177241228-1772494815'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60chr4:177241090-177251609"	NA	inner
CUST_1421_PI429285431	0.9015263	A	0.8981931	A	1.00231306920877	0	lncRNA	1410-1_{1..856}	"transcript_id ""ENST00000497811.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000497811.1"" | genecode_v17"	chr3	107560952	107561807	-	ENSG00000241469.2	ENST00000497811.1	LINC00635	LINC00635-002	NA	NA	NA	inter
CUST_30950_PI429285431	2.8896296	A	3.0813715	A	0.875547952339619	0	lncRNA	32738-1_{1..617}	n337065|DQ185039|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342121_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342121_04|-1.4049100|-0.4302700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337065|DQ185039|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342121_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342121_04|-1.4049100|-0.4302700	chr5	 69372739	 69373355	+	NA	NA	NA	NA	SMN2	NA	chr5:69362739-69373422	inner
LNCA_21_P0007414	0.9153026	A	0.9060528	A	1.00643207027897	0	lncRNA	TCONS_00019787	NA	NA	NA	NA	XLOC_009584	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009584), lincRNA [TCONS_00019787]"	chr11:123077560-123077501	hs|11q24.1	Agilent_HUMAN_G3V2	TCONS_00019787	TCONS_00019787	chr11	123077501	123077560	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_295_PI429201921	1.9420515	A	2.376873	A	0.739785280206713	0	lncRNA	205-3_{6001..7123}	TC06003923.hg.1	TCONS_l2_00025513-XLOC_l2_013162 // Broad TUCP // linc-RAET1G chr6:-:150319156-150326280 // chr6 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00024982-XLOC_l2_013162 // Broad TUCP // linc-RAET1G chr6:-:150321840-150322530 // chr6 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6:-:150319156-150326280	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00025513-XLOC_l2_013162	linc-RAET1G	chr6	150319156	150326280	-	NA	NA	NA	NA	SCMH1	NA	chr1:41698247-41707815	Unknown
CUST_39569_PI429285431	1.1366429	A	1.7014476	A	0.676046927904197	0	lncRNA	40513-1_{1..1761}	n387530|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011gsf.1||-0.8624360|-0.2184041	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387530|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011gsf.1||-0.8624360|-0.2184041	chr6	  1575443	  1577203	+	NA	NA	NA	NA	FOXC1	NA	chr6:1610681-1614132	inter
CUST_37041_PI429285431	4.6406116	P	4.335945	P	1.23513317070966	0	lncRNA	38179-1_{1..2722}	n345496|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1045|NULL|-1.2909300|-0.2181556	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345496|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1045|NULL|-1.2909300|-0.2181556	chr2	 27928652	 27931373	+	NA	NA	NA	NA	MRPL33	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10chr2:27994584-27999051"	NA	inter
CUST_50585_PI429285431	0.9117733	A	0.90468067	A	1.00492834100595	0	lncRNA	54277-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00002976 range=chr10:37592575-37636288 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002976 range=chr10:37592575-37636288 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 37595575	 37598574	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32575_PI429285431	0.90871286	A	0.8950292	A	1.00952991352117	0	lncRNA	34238-1_{1..1334}	n339193|BC016176|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1624|NULL|-1.0300600|-0.3236412	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339193|BC016176|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1624|NULL|-1.0300600|-0.3236412	chr16	 35019939	 35021272	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35097_PI429285431	1.0371138	A	0.8898915	A	1.107435212285	0	lncRNA	36504-1_{1..1328}	n342066|AF052172|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4547|NULL|-1.0641300|-0.2115187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342066|AF052172|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4547|NULL|-1.0641300|-0.2115187	chr12	130949552	130950879	-	NA	NA	NA	NA	RIMBP2	NA	chr12:130939552-130960860	inner
LNCA_21_P0013095	0.9113266	A	0.90122676	A	1.00702523763312	0	lncRNA	BC040308	NA	BC040308	NA	Hs.634168	XLOC_l2_013124	NA	NA	THC2497928	NA	"BROAD Institute lincRNA (XLOC_l2_013124), lincRNA [TCONS_l2_00024922]"	chr6:134799442-134799383	hs|6q23.2	Agilent_HUMAN_G3V2	BC040308	BC040308	chr6	134799383	134799442	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38685_PI429285431	4.9745054	P	5.2961802	P	0.800140468840361	0	lncRNA	39683-1_{1..2665}	n384074|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zlz.1||-0.6433050|-0.2168949	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384074|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zlz.1||-0.6433050|-0.2168949	chr22	 17593917	 17596581	+	NA	NA	NA	NA	IL17RA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr22:17583917-17596584"	NA	inner
CUST_46945_PI429285431	6.4306326	P	6.5851254	P	0.898448179627918	0	lncRNA	51053-1_{1..607}	"gi|310123724|ref|XR_109436.1| PREDICTED: Homo sapiens uncharacterized LOC100507425 (LOC100507425), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310123724|ref|XR_109436.1| PREDICTED: Homo sapiens uncharacterized LOC100507425 (LOC100507425), misc_RNA"	NA	NA	NA	NA	NA	XR_109436.1	NA	NA	NA	NA	NA	Unknown
CUST_7695_PI429285431	3.8375514	P	4.254363	P	0.749078282155645	0	lncRNA	9328-1_{1..459}	lnc-CRYBA4-1:41	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:41	chr22	 27138702	 27139160	+	lnc-CRYBA4-1	lnc-CRYBA4-1:41	ENSG00000244625	XLOC_014192	NA	"hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-59.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-19.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-62.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60"	NA	inter
CUST_40974_PI429285431	0.8899849	A	0.99362993	A	0.930678619709044	0	lncRNA	41645-1_{1..2138}	n411066|NR_038890|lncRNA|Homosapiens||RefGeneNoncode|NR_038890||0.0750495|-0.4207612	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411066|NR_038890|lncRNA|Homosapiens||RefGeneNoncode|NR_038890||0.0750495|-0.4207612	chr9	 99631181	 99633318	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11214_PI429285431	2.4592433	A	2.4173212	A	1.02948449371823	0	lncRNA	12772-1_{1..224}	lnc-PRKAA2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRKAA2-4:1	chr1	 56483397	 56483620	+	lnc-PRKAA2-4	lnc-PRKAA2-4:1	XLOC_000211	linc-PRKAA2-4	NA	NA	NA	inter
CUST_4683_PI429285431	0.8965099	A	0.89742607	A	0.999365160943225	0	lncRNA	4630-1_{1..726}	"transcript_id ""ENST00000599179.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599179.1"" | genecode_v17"	chr13	106358448	106359173	+	ENSG00000226620.2	ENST00000599179.1	LINC00343	LINC00343-006	NA	NA	NA	inter
CUST_15731_PI429285431	1.2735107	A	0.9006586	A	1.29491024242524	0	lncRNA	17416-1_{1..347}	lnc-ATIC-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATIC-4:1	chr2	216351078	216351424	+	lnc-ATIC-4	lnc-ATIC-4:1	XLOC_001847	linc-TMEM169-7	NA	NA	NA	inter
CUST_24408_PI429285431	1.0166312	A	1.3668463	A	0.784467128298685	0	lncRNA	25961-1_{1..530}	lnc-EFCAB4B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EFCAB4B-2:1	chr12	  3572495	  3573024	-	lnc-EFCAB4B-2	lnc-EFCAB4B-2:1	ENSG00000256691.1	RP11-476M19.3	NA	NA	NA	inner
CUST_40538_PI429285431	1.0299149	A	0.9290715	A	1.07240020483744	0	lncRNA	41296-1_{1..2898}	n409653|NR_034039|lncRNA|Homosapiens||RefGeneNoncode|NR_034039||4.6873400|-0.2460139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409653|NR_034039|lncRNA|Homosapiens||RefGeneNoncode|NR_034039||4.6873400|-0.2460139	chr15	 45315301	 45318198	+	NA	NA	NA	NA	SORD	NA	chr15:45315302-45367287	inner
CUST_23270_PI429285431	1.3607202	A	1.0862896	A	1.209516625395	0	lncRNA	24841-1_{1..1930}	lnc-AC016251.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AC016251.1-1:1	chr15	 96870428	 96872357	-	lnc-AC016251.1-1	lnc-AC016251.1-1:1	ENSG00000247809.3	RP11-327J17.3	NR2F2	NA	chr15:96869157-96880590	inner
CUST_30390_PI429285431	5.038429	P	5.2951994	P	0.836959431326538	0	lncRNA	32170-1_{1..525}	n335508|BC058827|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259865|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259865|-1.0426800|-0.6009399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335508|BC058827|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259865|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259865|-1.0426800|-0.6009399	chr5	 39105332	 39105856	-	NA	NA	NA	NA	FYB	NA	chr5:39105357-39115857	inner
CUST_3955_PI429285431	0.90035635	A	0.90391165	A	0.997538687837187	0	lncRNA	3925-1_{1..522}	"transcript_id ""ENST00000534388.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534388.1"" | genecode_v17"	chr11	 59792381	 59792902	+	ENSG00000255393.1	ENST00000534388.1	RP11-736I10.1	RP11-736I10.1-001	PLAC1L	NA	chr11:59807748-59808550	inter
CUST_29113_PI429285431	0.9029734	A	1.1271241	A	0.856098854117902	0	lncRNA	30847-1_{1..383}	n326612|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000022105|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000022105|-0.8323620|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326612|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000022105|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000022105|-0.8323620|-1.0000000	chr1	 53586747	 53587129	-	NA	NA	NA	NA	SLC1A7	NA	chr1:53576747-53597493	inner
CUST_50636_PI429285431	7.078408	P	6.945163	P	1.09675782534961	0	lncRNA	54318-1_{1..962}	hg19_lincRNAsTranscripts_TCONS_l2_00003438 range=chr10:27220145-27223956 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003438 range=chr10:27220145-27223956 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 27220145	 27221106	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14905_PI429285431	8.13527	P	8.203477	P	0.953822684851463	0	lncRNA	16568-1_{1..391}	lnc-THNSL2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THNSL2-1:2	chr2	 88584346	 88584736	+	lnc-THNSL2-1	lnc-THNSL2-1:2	XLOC_001561	linc-C2orf51	NA	NA	NA	inter
CUST_47584_PI429285431	1.866042	A	0.88651085	A	1.97182449727154	0	lncRNA	51588-1_{1..2304}	"gi|223005918|ref|NR_026742.1| Homo sapiens uncharacterized LOC158572 (LOC158572), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223005918|ref|NR_026742.1| Homo sapiens uncharacterized LOC158572 (LOC158572), non-coding RNA"	NW_004070880.2	  2066153	  2068456	-	158572	NR_026742.1	NA	NA	NA	NA	NA	Unknown
CUST_12001_PI429285431	0.89063966	A	0.88668644	A	1.00274392097601	0	lncRNA	13582-1_{1..279}	lnc-TP53I11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TP53I11-2:1	chr11	 45029625	 45029903	-	lnc-TP53I11-2	lnc-TP53I11-2:1	XLOC_009429	linc-TP53I11-1	NA	NA	NA	inter
CUST_11526_PI429285431	7.538009	P	7.7380047	P	0.870553158004565	0	lncRNA	13097-1_{1..982}	lnc-ADHFE1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADHFE1-1:3	chr8	 67387028	 67388009	+	lnc-ADHFE1-1	lnc-ADHFE1-1:3	XLOC_006828	linc-C8orf46	ADHFE1	NA	chr8:67377028-67381044	inter
CUST_27985_PI429285431	1.3314754	A	0.91695094	A	1.33285926865695	0	lncRNA	29591-1_{1..687}	n325236|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328766|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328766|-1.2493700|-0.3479896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325236|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328766|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328766|-1.2493700|-0.3479896	chr2	 82557769	 82558455	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42793_PI429285431	0.9118183	A	0.90184236	A	1.00693875707703	0	lncRNA	45785-1_{1..104}	ENST00000459577 ncrna:snoRNA chromosome:GRCh37:17:38183795:38183898:-1 gene:ENSG00000238793 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459577 ncrna:snoRNA chromosome:GRCh37:17:38183795:38183898:-1 gene:ENSG00000238793 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 38183795	 38183898	-	ENSG00000238793	ENST00000459577	NA	NA	MED24	NA	chr17:38175350-38193898	inter
CUST_49607_PI429285431	1.2072209	A	1.5652516	A	0.780228877024248	0	lncRNA	53397-1_{1..422}	hg19_lincRNAsTranscripts_TCONS_l2_00025054 range=chr6:170483728-170484703 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025054 range=chr6:170483728-170484703 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	170483728	170484149	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31861_PI429285431	2.1618257	A	1.2457707	A	1.8869484367339	0	lncRNA	33594-1_{1..3000}	n338412|BX647685|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|809|NULL|-0.7107680|-0.3043131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338412|BX647685|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|809|NULL|-0.7107680|-0.3043131	chr14	 75889958	 75892957	-	NA	NA	NA	NA	JDP2	NA	chr14:75894509-75904444	inter
CUST_22814_PI429285431	0.9105479	A	0.9107003	A	0.999894369948929	0	lncRNA	24394-1_{1..530}	lnc-BET3L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BET3L-1:1	chr6	116784782	116785311	-	lnc-BET3L-1	lnc-BET3L-1:1	ENSG00000244158.1	RP1-93H18.6	FAM26F	"hg19_refFlat_FAM26F:range=chr6:116783093-1167848685'pad=0,hg19_refFlat_FAM26F:range=chr6:116783093-1167848685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80chr6:116774782-116784934"	NA	inner
CUST_2670_PI429285431	0.9078617	A	0.91071445	A	0.99802457809987	0	lncRNA	2656-1_{1..614}	"transcript_id ""ENST00000455229.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455229.1"" | genecode_v17"	chr6	150971908	150972521	-	ENSG00000226599.1	ENST00000455229.1	RP11-136K14.3	RP11-136K14.3-001	PLEKHG1	NA	chr6:150961908-150983161	inner
CUST_9046_PI429285431	7.3313546	P	7.6202393	P	0.818534596155256	0	lncRNA	10571-1_{1..2272}	lnc-NDST2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDST2-2:1	chr10	 75547343	 75549614	-	lnc-NDST2-2	lnc-NDST2-2:1	ENSG00000244941	ENST00000500011	KIAA0913	"hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZSWIM8:range=chr10:75545637-755612775'pad=0,hg19_refFlat_ZSWIM8:range=chr10:75545637-755612775'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZSWIM8:range=chr10:75545637-755615345'pad=0,hg19_refFlat_ZSWIM8:range=chr10:75545637-755615345'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30chr10:75545382-75557998"	NA	inner
LNCA_21_P0003558	5.6556387	P	5.5159926	P	1.1016348464272	0	lncRNA	TCONS_00007955	NA	NA	NA	NA	XLOC_003422	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003422), lincRNA [TCONS_00007955]"	chr4:1555048-1555107	hs|4p16.3	Agilent_HUMAN_G3V2	TCONS_00007955	TCONS_00007955	chr4	  1555048	  1555107	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15922_PI429285431	6.0657234	P	6.25493	P	0.87708793705604	0	lncRNA	17617-1_{1..203}	lnc-C9orf107-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf107-2:1	chr9	105000314	105000516	+	lnc-C9orf107-2	lnc-C9orf107-2:1	XLOC_007494	linc-CYLC2-2	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.70"	NA	inter
CUST_2379_PI429285431	0.8986657	A	0.89078933	A	1.00547441379737	0	lncRNA	2372-1_{1..391}	"transcript_id ""ENST00000604680.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604680.1"" | genecode_v17"	chr5	137097235	137097625	+	ENSG00000270697.1	ENST00000604680.1	RP11-381K20.4	RP11-381K20.4-001	HNRNPA0	NA	chr5:137087235-137090039	inter
CUST_41455_PI429285431	3.8554196	P	3.9727259	P	0.921907366075578	0	lncRNA	42638-1_{1..92}	ENST00000516047 ncrna:miRNA chromosome:GRCh37:5:54468090:54468181:-1 gene:ENSG00000251856 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516047 ncrna:miRNA chromosome:GRCh37:5:54468090:54468181:-1 gene:ENSG00000251856 gene_biotype:miRNA transcript_biotype:miRNA	chr5	 54468090	 54468181	-	ENSG00000251856	ENST00000516047	NA	NA	CDC20B	NA	chr5:54458090-54469005	inner
LNCA_21_P0008397	5.2633314	P	5.8017793	P	0.688511234380584	0	lncRNA	TCONS_00022641	NA	NA	NA	NA	XLOC_010943	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010943), lincRNA [TCONS_00022641]"	chr14:103785324-103785383	hs|14q32.32	Agilent_HUMAN_G3V2	TCONS_00022641	TCONS_00022641	chr14	103785324	103785383	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28659_PI429285431	0.91638196	A	1.2632023	A	0.786315206522907	0	lncRNA	30351-1_{1..413}	n326038|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047274|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047274|-1.2804100|-0.3255455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326038|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047274|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047274|-1.2804100|-0.3255455	chr10	 26978266	 26978678	+	NA	NA	NA	NA	PDSS1	NA	chr10:26986595-26992046	inter
CUST_48112_PI429285431	11.919654	P	11.513041	P	1.32557013112037	0	lncRNA	51985-1_{1..3000}	"gi|397138530|ref|XR_159520.1| PREDICTED: Homo sapiens protein FAM75D1-like (LOC100996796), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138530|ref|XR_159520.1| PREDICTED: Homo sapiens protein FAM75D1-like (LOC100996796), misc_RNA"	NA	NA	NA	NA	NA	XR_159520.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001376	0.9836633	A	0.904106	A	1.05669373772177	0	lncRNA	TCONS_00001172	NA	NA	NA	NA	XLOC_000424	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000424), lincRNA [TCONS_00001172]"	chr1:156483049-156483108	hs|1q22	Agilent_HUMAN_G3V2	TCONS_00001172	TCONS_00001172	chr1	156483049	156483108	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15334_PI429285431	4.421645	P	4.864076	P	0.735893552666511	0	lncRNA	17013-1_{1..414}	lnc-SNAPC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNAPC2-1:1	chr19	  8014227	  8014640	+	lnc-SNAPC2-1	lnc-SNAPC2-1:1	XLOC_012945	linc-CCL25-2	TIMM44	NA	chr19:8004227-8008708	inter
CUST_39012_PI429285431	0.9176485	A	0.9146702	A	1.00206653258914	0	lncRNA	39992-1_{1..3000}	n385327|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wpf.1||-0.4004960|-0.2325456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385327|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wpf.1||-0.4004960|-0.2325456	chr8	   590407	   593406	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70"	NA	inter
CUST_36558_PI429285431	0.9146285	A	1.4067795	A	0.710964288162598	0	lncRNA	37754-1_{1..289}	n345056|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_605|NULL|-1.2976100|-0.2349386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345056|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_605|NULL|-1.2976100|-0.2349386	chr9	101624160	101624448	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6016_PI429285431	2.1311028	A	3.171516	A	0.486188205369988	0	lncRNA	5941-1_{1..782}	"transcript_id ""ENST00000579981.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579981.1"" | genecode_v17"	chr17	 79836543	 79837324	+	ENSG00000263859.1	ENST00000579981.1	RP11-498C9.16	RP11-498C9.16-001	THOC4	NA	chr17:79845711-79847433	inter
CUST_47509_PI429285431	0.91340417	A	0.9190081	A	0.996123186042756	0	lncRNA	51521-1_{1..2775}	"gi|336595297|ref|NR_038949.1| Homo sapiens uncharacterized LOC100506195 (LOC100506195), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336595297|ref|NR_038949.1| Homo sapiens uncharacterized LOC100506195 (LOC100506195), transcript variant 1, non-coding RNA"	Chr22	 34120972	 34123746	+	100506195	NR_038949.1	NA	NA	NA	NA	NA	inter
CUST_48592_PI429285431	1.532372	A	0.91556656	A	1.53347584314552	0	lncRNA	52439-1_{1..621}	hg19_lincRNAsTranscripts_TCONS_l2_00013557 range=chr2:33858461-33881292 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013557 range=chr2:33858461-33881292 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 33858461	 33859081	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27635_PI429285431	0.9003426	A	0.9040853	A	0.997409120184945	0	lncRNA	29213-1_{1..468}	n324841|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171682|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171682|-1.2984900|-0.4399585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324841|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171682|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171682|-1.2984900|-0.4399585	chr21	 27932882	 27933349	+	NA	NA	NA	NA	CYYR1	NA	chr21:27922882-27945581	inner
LNCA_21_P0002803	0.9225149	A	0.91094345	A	1.00805297007139	0	lncRNA	ENST00000466291	NA	NA	NA	NA	XLOC_002918	NA	ENST00000466291	NA	NA	"BROAD Institute lincRNA (XLOC_002918), lincRNA [TCONS_00005656]"	chr3:170071669-170071728	hs|3q26.2	Agilent_HUMAN_G3V2	ENST00000466291	ENST00000466291	chr3	170071669	170071728	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38392_PI429285431	7.679307	P	7.9983697	P	0.801590491256512	0	lncRNA	39430-1_{1..352}	n382309|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yuj.1||2.1025100|-0.0929029	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n382309|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yuj.1||2.1025100|-0.0929029	chr15	 22472918	 22473269	-	NA	NA	NA	NA	LOC642131	NA	chr15:22471454-22473353	inter
CUST_10891_PI429285431	3.9536757	P	3.809095	P	1.10540933420432	0	lncRNA	12432-1_{1..917}	lnc-DAAM2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DAAM2-3:1	chr6	 40347021	 40347937	+	lnc-DAAM2-3	lnc-DAAM2-3:1	XLOC_005285	linc-TSPO2-2	NA	NA	NA	inter
CUST_10451_PI429285431	4.7400875	P	5.13313	P	0.761521936032923	0	lncRNA	11977-1_{1..400}	lnc-LRRC61-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC61-2:2	chr7	150045155	150045554	+	lnc-LRRC61-2	lnc-LRRC61-2:2	XLOC_006291	linc-REPIN1	LRRC61	NA	chr7:150035155-150035245	inter
CUST_43654_PI429285431	0.9098486	A	0.9067334	A	1.00216162504693	0	lncRNA	48410-1_{1..2581}	"gi|410170412|ref|XR_108300.3| PREDICTED: Homo sapiens uncharacterized LOC100147773 (LOC100147773), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410170412|ref|XR_108300.3| PREDICTED: Homo sapiens uncharacterized LOC100147773 (LOC100147773), misc_RNA"	Chr1	165738166	165740746	+	100147773	XR_108300.4	NA	NA	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70"	NA	inter
CUST_36875_PI429285431	4.1796293	P	4.276232	P	0.935232713573377	0	lncRNA	38034-1_{1..569}	n345344|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_893|NULL|-1.6096300|-0.3280741	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345344|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_893|NULL|-1.6096300|-0.3280741	chr17	 33306242	 33306810	+	NA	NA	NA	NA	LIG3	NA	chr17:33307517-33316811	inter
CUST_14974_PI429285431	2.2241955	A	3.9710808	P	0.297944330462471	0	lncRNA	16636-1_{1..804}	lnc-SRP9-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRP9-1:4	chr1	225903748	225904551	+	lnc-SRP9-1	lnc-SRP9-1:4	XLOC_000587	linc-SRP9-1	NA	NA	NA	inter
CUST_21456_PI429285431	3.8786006	P	1.7184224	A	4.4697006103724	0	lncRNA	23074-1_{1..765}	lnc-AP3S1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP3S1-4:3	chr5	114955765	114956529	+	lnc-AP3S1-4	lnc-AP3S1-4:3	ENSG00000249249.1	AC010226.4	TMED7	"hg19_refFlat_TMED7-TICAM2:range=chr5:114916246-1149614895'pad=0,hg19_refFlat_TMED7-TICAM2:range=chr5:114916246-1149614895'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TMED7:range=chr5:114951906-1149614895'pad=0,hg19_refFlat_TMED7:range=chr5:114951906-1149614895'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TMED7-TICAM2:range=chr5:114917012-1149614895'pad=0,hg19_refFlat_TMED7-TICAM2:range=chr5:114917012-1149614895'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60chr5:114948905-114961876"	NA	inner
CUST_5265_PI429285431	0.90731955	A	0.9039897	A	1.00231074179737	0	lncRNA	5205-1_{1..658}	"transcript_id ""ENST00000558086.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558086.1"" | genecode_v17"	chr15	 81702858	 81703515	+	ENSG00000259372.1	ENST00000558086.1	CTD-2240J17.1	CTD-2240J17.1-002	NA	NA	NA	inter
CUST_49681_PI429285431	3.2819817	P	2.1696234	A	2.16198767706846	0	lncRNA	53459-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00025618 range=chr7:5862779-5889683 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025618 range=chr7:5862779-5889683 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  5862779	  5865778	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
LNCA_21_P0011462	1.7128987	A	0.9160231	A	1.73733455781069	0	lncRNA	TCONS_l2_00010088	NA	NA	NA	NA	XLOC_l2_005438	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005438), lincRNA [TCONS_l2_00010088]"	chr16:30304830-30304771	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00010088	TCONS_l2_00010088	chr16	 30304771	 30304830	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24179_PI429285431	0.9162793	A	0.91637	A	0.999937133526903	0	lncRNA	25730-1_{1..842}	lnc-BMP2K-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-BMP2K-1:5	chr4	 80148366	 80149207	+	lnc-BMP2K-1	lnc-BMP2K-1:5	ENSG00000249307.1	RP11-438E5.1	NA	NA	NA	inter
CUST_18682_PI429285431	5.2753696	P	5.880144	P	0.657574199573651	0	lncRNA	20383-1_{1..3000}	lnc-MFSD6L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MFSD6L-1:1	chr17	  8770846	  8773845	-	lnc-MFSD6L-1	lnc-MFSD6L-1:1	ENSG00000174083	PIK3R6	PIK3R6	NA	chr17:8760846-8770994	inner
CUST_18398_PI429285431	0.93527186	A	0.890288	A	1.03167163751817	0	lncRNA	20123-1_{1..746}	lnc-HSCB-1:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HSCB-1:15	chr22	 28395418	 28396163	+	lnc-HSCB-1	lnc-HSCB-1:15	ENSG00000235954	TTC28-AS1	TTC28	"hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0,hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0 3'pad=0 strand=- repeatMasking=none,-97.10chr22:28385418-28405464"	NA	inner
CUST_50460_PI429285431	1.1912258	A	0.9118691	A	1.21365359366631	0	lncRNA	54162-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030251 range=chrX:73164177-73169688 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030251 range=chrX:73164177-73169688 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 73164177	 73167176	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-96.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80"	NA	inter
CUST_28776_PI429285431	1.4239874	A	2.5727813	A	0.451002113684101	0	lncRNA	30483-1_{1..390}	n326181|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092698|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092698|-1.1278800|-0.3306070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326181|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092698|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092698|-1.1278800|-0.3306070	chr1	232767666	232768055	+	NA	NA	NA	NA	NA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-28.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30"	NA	inter
CUST_21586_PI429285431	0.894495	A	0.89813906	A	0.997477317410468	0	lncRNA	23200-1_{1..748}	lnc-IPO5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-IPO5-1:2	chr13	 98985025	 98985772	+	lnc-IPO5-1	lnc-IPO5-1:2	ENSG00000225318.1	FARP1-IT1	FARP1	NA	chr13:98975025-98995492	inner
CUST_34934_PI429285431	7.5767417	P	7.508263	P	1.04861035673477	0	lncRNA	36352-1_{1..2623}	n341851|AK124196|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4331|NULL|2.0787200|-0.1926155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341851|AK124196|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4331|NULL|2.0787200|-0.1926155	chr6	 42895739	 42898361	+	NA	NA	NA	NA	PTCRA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00chr6:42885739-42893576"	NA	inner
CUST_16772_PI429285431	0.89226913	A	0.8989335	A	0.995391263693216	0	lncRNA	18480-1_{1..2016}	lnc-FAM161A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM161A-1:1	chr2	 61991168	 61993183	-	lnc-FAM161A-1	lnc-FAM161A-1:1	XLOC_002113	linc-XPO1-2	NA	NA	NA	inter
CUST_9361_PI429285431	0.9090282	A	0.9083058	A	1.00050085490919	0	lncRNA	10865-1_{1..932}	lnc-TMEM17-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM17-2:5	chr2	 62889743	 62890674	-	lnc-TMEM17-2	lnc-TMEM17-2:5	XLOC_002117	linc-TMEM17	NA	NA	NA	inter
CUST_19063_PI429285431	1.4261183	A	0.9137046	A	1.42643469598799	0	lncRNA	20754-1_{1..714}	lnc-AC114783.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC114783.1.1-1:2	chr2	127659445	127660158	+	lnc-AC114783.1.1-1	lnc-AC114783.1.1-1:2	ENSG00000237524	AC114783.1	LOC339760	NA	chr2:127649445-127659013	inter
CUST_24503_PI429285431	6.6498265	P	6.9650497	P	0.803726636213798	0	lncRNA	26054-1_{1..946}	lnc-CCDC125-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC125-2:2	chr5	 68431978	 68432923	-	lnc-CCDC125-2	lnc-CCDC125-2:2	ENSG00000248664.1	CTC-498J12.3	SLC30A5	"hg19_refFlat_SLC30A5:range=chr5:68390083-684254445'pad=0,hg19_refFlat_SLC30A5:range=chr5:68390083-684254445'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10chr5:68421978-68426899"	NA	inter
CUST_10800_PI429285431	0.90361166	A	0.8997863	A	1.00265505593325	0	lncRNA	12337-1_{1..1500}	lnc-QSOX2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-QSOX2-1:2	chr9	139166729	139168228	-	lnc-QSOX2-1	lnc-QSOX2-1:2	XLOC_007895	linc-QSOX2	NA	NA	NA	inter
CUST_5940_PI429285431	1.2075996	A	0.8993063	A	1.2382419999332	0	lncRNA	5869-1_{1..591}	"transcript_id ""ENST00000587999.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587999.1"" | genecode_v17"	chr17	 66587937	 66588527	+	ENSG00000267659.1	ENST00000587999.1	RP11-118B18.1	RP11-118B18.1-004	FAM20A	NA	chr17:66577937-66597095	inner
CUST_20129_PI429285431	4.712052	P	4.821581	P	0.926890616631701	0	lncRNA	21776-1_{1..315}	lnc-CACNA1C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CACNA1C-1:1	chr12	  2031798	  2032112	+	lnc-CACNA1C-1	lnc-CACNA1C-1:1	ENSG00000256706.1	RP5-1096D14.3	CACNA2D4	NA	chr12:2021798-2027870	inter
CUST_7827_PI429285431	9.406095	P	8.470077	P	1.91324018686158	0	lncRNA	9451-1_{1..892}	lnc-USP34-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-USP34-1:3	chr2	 61371908	 61372799	-	lnc-USP34-1	lnc-USP34-1:3	ENSG00000212978	AC016747.3	KIAA1841	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40chr2:61361908-61365169"	NA	inter
CUST_12859_PI429285431	1.1696839	A	0.9102514	A	1.19700775580083	0	lncRNA	14486-1_{1..1017}	lnc-TRPM1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRPM1-1:2	chr15	 31522910	 31523926	-	lnc-TRPM1-1	lnc-TRPM1-1:2	XLOC_011413	linc-TRPM1	LOC283710	NA	chr15:31514970-31523050	inner
CUST_49057_PI429285431	3.4632173	P	3.155645	A	1.23762333180985	0	lncRNA	52885-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00020965 range=chr4:189659523-189663173 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020965 range=chr4:189659523-189663173 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	189659523	189662522	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43607_PI429285431	7.2348266	P	7.173128	P	1.04369386179983	0	lncRNA	48370-1_{1..2216}	"gi|344313189|ref|NR_045035.1| Homo sapiens anterior pharynx defective 1 homolog A (C. elegans) (APH1A), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|344313189|ref|NR_045035.1| Homo sapiens anterior pharynx defective 1 homolog A (C. elegans) (APH1A), transcript variant 7, non-coding RNA"	NW_003871055.3	  7080812	  7083027	-	51107	NR_045035.1	NA	NA	NA	NA	NA	Unknown
CUST_44967_PI429285431	0.9122387	A	0.9227797	A	0.992720162890962	0	lncRNA	49478-1_{1..2219}	"gi|341865585|ref|NR_040585.1| Homo sapiens stromal antigen 3-like 4 (STAG3L4), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|341865585|ref|NR_040585.1| Homo sapiens stromal antigen 3-like 4 (STAG3L4), transcript variant 1, non-coding RNA"	Chr7	 66767625	 66769843	+	64940	NR_040585.1	NA	NA	NA	NA	NA	inter
CUST_41538_PI429285431	2.1923835	A	2.367448	A	0.885727919099413	0	lncRNA	42807-1_{1..81}	ENST00000584559 ncrna:miRNA chromosome:GRCh37:2:240273419:240273499:-1 gene:ENSG00000264292 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584559 ncrna:miRNA chromosome:GRCh37:2:240273419:240273499:-1 gene:ENSG00000264292 gene_biotype:miRNA transcript_biotype:miRNA	chr2	240273419	240273499	-	ENSG00000264292	ENST00000584559	NA	NA	HDAC4	NA	chr2:240263419-240283499	inner
CUST_26314_PI429285431	2.8273783	A	2.8462014	A	0.987037566778059	0	lncRNA	27821-1_{1..552}	lnc-SNURF-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SNURF-1:9	chr15	 25298975	 25299526	+	lnc-SNURF-1	lnc-SNURF-1:9	ENSG00000224078.4	SNHG14	SNRPN	NA	chr15:25288975-25309063	inter
CUST_25000_PI429285431	1.0861434	A	1.4502023	A	0.776975547046175	0	lncRNA	26541-1_{1..459}	lnc-MIA3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MIA3-2:1	chr1	222765508	222765966	+	lnc-MIA3-2	lnc-MIA3-2:1	ENSG00000225265.1	RP11-378J18.3	TAF1A	NA	chr1:222755508-222763275	inter
CUST_18981_PI429285431	0.91008544	A	0.9215629	A	0.992075992747595	0	lncRNA	20673-2_{3001..3830}	lnc-USP46-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP46-1:1	chr4	 53620510	 53621339	-	lnc-USP46-1	lnc-USP46-1:1	ENSG00000226887	AC104066.1	LOC100288413	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90chr4:53609684-53617807"	NA	inner
LNCA_33_P3363710	0.924134	A	0.92357343	A	1.00038863301326	0	lncRNA	XR_132751	XR_132751	XR_132751	100128075	Hs.688652	LOC100128075	uncharacterized LOC100128075	NA	NP852503	NA	"PREDICTED: Homo sapiens hypothetical LOC100128075 (LOC100128075), miscRNA [XR_132751]"	chr14:89734848-89734789	hs|14q31.3	Agilent_HUMAN_G3V2	XR_132751	XR_132751	chr14	 89734789	 89734848	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10434_PI429285431	0.91445535	A	0.9131408	A	1.00091159187374	0	lncRNA	11962-1_{1..414}	lnc-ADD3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADD3-2:1	chr10	110748587	110749000	+	lnc-ADD3-2	lnc-ADD3-2:1	XLOC_008609	linc-ADD3-2	NA	NA	NA	inter
CUST_13796_PI429285431	2.9104905	P	2.574477	P	1.26226384367428	0	lncRNA	15438-1_{1..1050}	lnc-RP11-511B23.3.1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-511B23.3.1-3:3	chr12	 93413187	 93414236	+	lnc-RP11-511B23.3.1-3	lnc-RP11-511B23.3.1-3:3	XLOC_009837	linc-NUDT4-4	NA	NA	NA	inter
CUST_34896_PI429285431	4.4203176	P	4.8389797	P	0.748118078714372	0	lncRNA	36321-1_{1..1869}	n341812|BC027323|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4291|NULL|2.3215100|-0.1619805	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341812|BC027323|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4291|NULL|2.3215100|-0.1619805	chr9	140188319	140190187	-	NA	NA	NA	NA	NRARP	NA	chr9:140194083-140196703	inter
CUST_3038_PI429285431	0.9135335	A	0.95717597	A	0.970202316974108	0	lncRNA	3017-1_{1..581}	"transcript_id ""ENST00000517994.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517994.1"" | genecode_v17"	chr8	 20880807	 20881387	+	ENSG00000254040.1	ENST00000517994.1	RP11-421P23.2	RP11-421P23.2-001	NA	NA	NA	inter
CUST_47090_PI429285431	14.126474	P	14.328849	P	0.869118620556511	0	lncRNA	51173-1_{1..1397}	"gi|166091471|ref|NR_003662.2| Homo sapiens ribosomal protein SA pseudogene 58 (RPSAP58), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|166091471|ref|NR_003662.2| Homo sapiens ribosomal protein SA pseudogene 58 (RPSAP58), non-coding RNA"	Chr19	 23945816	 23947212	+	388524	NR_003662.2	NA	NA	NA	NA	NA	inter
CUST_51734_PI429285431	0.913247	A	0.90698206	A	1.00435196792427	0	lncRNA	55287-1_{1..1170}	hg19_lincRNAsTranscripts_TCONS_l2_00011998 range=chr18:15323048-15330631 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011998 range=chr18:15323048-15330631 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 15323048	 15324217	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41606_PI429285431	5.493852	P	5.9955893	P	0.706255792435342	0	lncRNA	42963-1_{1..83}	ENST00000582498 ncrna:miRNA chromosome:GRCh37:14:103005981:103006063:1 gene:ENSG00000266015 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582498 ncrna:miRNA chromosome:GRCh37:14:103005981:103006063:1 gene:ENSG00000266015 gene_biotype:miRNA transcript_biotype:miRNA	chr14	103005981	103006063	+	ENSG00000266015	ENST00000582498	NA	NA	NA	NA	NA	inter
CUST_14444_PI429285431	1.152313	A	0.9001526	A	1.19098925715188	0	lncRNA	16107-1_{1..433}	lnc-OLFM3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OLFM3-1:2	chr1	102855050	102855482	-	lnc-OLFM3-1	lnc-OLFM3-1:2	XLOC_000943	linc-OLFM3-2	NA	NA	NA	inter
LNCA_21_P0003673	2.4101572	A	2.3182938	A	1.06574582231451	0	lncRNA	TCONS_00008315	NA	NA	NA	NA	XLOC_003771	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003771), lincRNA [TCONS_00008315]"	chr4:169932115-169932174	hs|4q32.3	Agilent_HUMAN_G3V2	TCONS_00008315	TCONS_00008315	chr4	169932115	169932174	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18738_PI429285431	0.9101078	A	0.9086491	A	1.00101160511993	0	lncRNA	20435-2_{3001..3780}	lnc-TCL1B-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCL1B-1:11	chr14	 96141014	 96141793	+	lnc-TCL1B-1	lnc-TCL1B-1:11	ENSG00000187621	TCL6	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80"	NA	inter
CUST_34572_PI429285431	1.3398048	A	0.91408604	A	1.34324154773166	0	lncRNA	36032-1_{1..2951}	n341455|AY363099|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3925|NULL|12.1872000|-0.3814749	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341455|AY363099|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3925|NULL|12.1872000|-0.3814749	chr8	 17542000	 17544950	-	NA	NA	NA	NA	MTUS1	NA	chr8:17532000-17658426	inner
CUST_24979_PI429285431	2.5622516	A	3.2409673	P	0.624721159338302	0	lncRNA	26519-1_{1..395}	lnc-RPRML-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPRML-1:1	chr17	 45000177	 45000571	-	lnc-RPRML-1	lnc-RPRML-1:1	ENSG00000261886.1	RP11-63A1.1	GOSR2	NA	chr17:44998490-45010400	inter
CUST_14229_PI429285431	0.9123621	A	0.9225949	A	0.992932258329203	0	lncRNA	15887-1_{1..1067}	lnc-ZFAT-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFAT-4:1	chr8	136685457	136686523	-	lnc-ZFAT-4	lnc-ZFAT-4:1	XLOC_007234	linc-ZFAT-3	NA	NA	NA	inter
CUST_50244_PI429285431	1.0097207	A	0.9300052	A	1.05680961676095	0	lncRNA	53969-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00029343 range=chr9:68411270-68418932 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029343 range=chr9:68411270-68418932 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 68414270	 68417269	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00"	NA	inter
CUST_19609_PI429285431	1.2283213	A	0.89851904	A	1.2568410964006	0	lncRNA	21265-1_{1..749}	lnc-CTH-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTH-3:1	chr1	 71416584	 71417332	+	lnc-CTH-3	lnc-CTH-3:1	ENSG00000235782.1	RP3-333A15.1	PTGER3	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40chr1:71406584-71427176"	NA	inter
CUST_19090_PI429285431	6.448298	P	5.4698906	P	1.97028919358276	0	lncRNA	20779-1_{1..200}	lnc-MKI67-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MKI67-2:1	chr10	130696145	130696344	-	lnc-MKI67-2	lnc-MKI67-2:1	ENSG00000231308	RP11-442O18.3	NA	NA	NA	inter
CUST_16284_PI429285431	1.842564	A	2.2162285	A	0.771819553976885	0	lncRNA	17989-1_{1..1804}	lnc-ZNF507-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF507-4:1	chr19	 32539684	 32541487	+	lnc-ZNF507-4	lnc-ZNF507-4:1	XLOC_013038	linc-ZNF507-4	NA	NA	NA	inter
CUST_48047_PI429285431	0.90439355	A	0.894017	A	1.00721840435951	0	lncRNA	51926-1_{1..2338}	"gi|310113683|ref|XR_112044.1| PREDICTED: Homo sapiens uncharacterized LOC644083 (LOC644083), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310113683|ref|XR_112044.1| PREDICTED: Homo sapiens uncharacterized LOC644083 (LOC644083), misc_RNA"	NA	NA	NA	NA	NA	XR_112044.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10"	NA	Unknown
CUST_46118_PI429285431	0.9075402	A	0.9004278	A	1.00494211215568	0	lncRNA	50378-1_{1..3000}	"gi|298919195|ref|NR_033801.1| Homo sapiens solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 pseudogene 1 (SLC9A7P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298919195|ref|NR_033801.1| Homo sapiens solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 pseudogene 1 (SLC9A7P1), non-coding RNA"	Chr12	 98847618	 98850617	-	121456	NR_033801.1	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.14;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_10102_PI429285431	1.094579	A	1.473934	A	0.768781220478641	0	lncRNA	11625-1_{1..353}	lnc-DYNC1I1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DYNC1I1-1:1	chr7	 95301866	 95302218	+	lnc-DYNC1I1-1	lnc-DYNC1I1-1:1	XLOC_006179	linc-DYNC1I1-1	NA	NA	NA	inter
CUST_29237_PI429285431	0.9123738	A	0.9179554	A	0.996138604133382	0	lncRNA	30988-1_{1..1319}	n326768|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000003226|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000003226|-0.4706370|-0.2501739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326768|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000003226|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000003226|-0.4706370|-0.2501739	chr1	    79413	    80731	-	NA	NA	NA	NA	OR4F5	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30chr1:69413-70008"	NA	inter
CUST_5403_PI429285431	3.963983	P	4.5569787	P	0.662964856134934	0	lncRNA	5337-1_{1..544}	"transcript_id ""ENST00000565827.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565827.1"" | genecode_v17"	chr16	  2506836	  2507379	-	ENSG00000260874.1	ENST00000565827.1	RP11-715J22.4	RP11-715J22.4-001	CCNF	"hg19_refFlat_CCNF:range=chr16:2479483-25070215'pad=0,hg19_refFlat_CCNF:range=chr16:2479483-25070215'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.90chr16:2496836-2508859"	NA	inner
LNCA_21_P0012744	1.5775243	A	0.90255404	A	1.59656386049189	0	lncRNA	ENST00000500169	NA	NA	NA	NA	XLOC_l2_010835	NA	ENST00000500169	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010835), lincRNA [TCONS_l2_00021711]"	chr4:132448437-132449267	hs|4q28.3	Agilent_HUMAN_G3V2	ENST00000500169	ENST00000500169	chr4	132448437	132449267	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49882_PI429285431	7.3145165	P	7.2781057	P	1.02555921903462	0	lncRNA	53633-1_{1..452}	hg19_lincRNAsTranscripts_TCONS_l2_00026053 range=chr7:76669138-76671652 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026053 range=chr7:76669138-76671652 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 76669138	 76669589	+	NA	NA	NA	NA	LOC100132581	NA	chr7:76659138-76659887	inter
CUST_18080_PI429285431	0.8896533	A	0.8893281	A	1.00022543687019	0	lncRNA	19815-1_{1..1588}	lnc-TGFBRAP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TGFBRAP1-1:2	chr2	105951616	105953203	-	lnc-TGFBRAP1-1	lnc-TGFBRAP1-1:2	XLOC_002245	linc-TGFBRAP1	TGFBRAP1	NA	chr2:105941616-105946148	inter
CUST_17756_PI429285431	0.89027095	A	0.8880069	A	1.00157055190098	0	lncRNA	19488-1_{1..549}	lnc-ARL4C-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARL4C-2:4	chr2	235797293	235797841	-	lnc-ARL4C-2	lnc-ARL4C-2:4	XLOC_002523	linc-ARL4C-1	NA	NA	NA	inter
CUST_32526_PI429285431	2.580178	A	1.8806639	A	1.62395775127597	0	lncRNA	34193-1_{1..654}	n339134|BC044845|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1564|NULL|-1.0660800|-0.2419550	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n339134|BC044845|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1564|NULL|-1.0660800|-0.2419550	chr16	 27279525	 27280178	+	NA	NA	NA	NA	NSMCE1	NA	chr16:27269525-27280113	inner
CUST_50904_PI429285431	4.6233997	P	4.2533207	P	1.29242360004204	0	lncRNA	54546-1_{1..405}	hg19_lincRNAsTranscripts_TCONS_l2_00005462 range=chr12:8341115-8347569 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005462 range=chr12:8341115-8347569 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	  8341115	  8341519	+	NA	NA	NA	NA	ZNF705A	NA	chr12:8331115-8332642	inter
CUST_23653_PI429285431	6.7765913	P	7.3257785	P	0.683405043525191	0	lncRNA	25219-1_{1..998}	lnc-CTU2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CTU2-6:1	chr16	 88753199	 88754196	+	lnc-CTU2-6	lnc-CTU2-6:1	ENSG00000260630.1	RP5-1142A6.3	RNF166	NA	chr16:88762903-88763594	inter
CUST_27355_PI429285431	0.91751564	A	0.9183502	A	0.999421694372188	0	lncRNA	28918-1_{1..441}	n324516|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000106561|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000106561|-1.0548500|-0.1745792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324516|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000106561|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000106561|-1.0548500|-0.1745792	chr6	 41457107	 41457547	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28624_PI429285431	3.650042	P	3.8481445	P	0.871696305418722	0	lncRNA	30309-1_{1..493}	n325993|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047735|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047735|-0.8646950|-0.1094779	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325993|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047735|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047735|-0.8646950|-0.1094779	chr10	 43716818	 43717310	-	NA	NA	NA	NA	RASGEF1A	NA	chr10:43706818-43737780	inner
CUST_2034_PI429285431	1.869123	A	2.5508518	P	0.623417777141821	0	lncRNA	2025-1_{1..1661}	"transcript_id ""ENST00000605200.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605200.1"" | genecode_v17"	chr5	  1594741	  1596401	+	ENSG00000271119.1	ENST00000605200.1	CTD-2012J19.3	CTD-2012J19.3-001	NA	NA	NA	inter
LNCA_21_P0013694	4.551592	P	5.558535	P	0.497599520374834	0	lncRNA	ENST00000417941	NA	NA	NA	NA	XLOC_l2_014757	NA	ENST00000417941	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014757), lincRNA [TCONS_l2_00029708]"	chr9:35480559-35481818	hs|9p13.3	Agilent_HUMAN_G3V2	ENST00000417941	ENST00000417941	chr9	 35480559	 35481818	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46374_PI429285431	7.574341	P	7.07265	P	1.41587215072937	0	lncRNA	50591-2_{3001..3575}	"gi|331284185|ref|NR_038150.1| Homo sapiens ubiquitin protein ligase E3 component n-recognin 7 (putative) (UBR7), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|331284185|ref|NR_038150.1| Homo sapiens ubiquitin protein ligase E3 component n-recognin 7 (putative) (UBR7), transcript variant 3, non-coding RNA"	Chr14	 93676401	 93676975	+	55148	NR_038150.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0011974	0.90807927	A	0.89744246	A	1.00740012142418	0	lncRNA	TCONS_l2_00014955	NA	NA	NA	NA	XLOC_l2_008317	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008317), lincRNA [TCONS_l2_00014955]"	chr2:155801527-155792556	hs|2q24.1	Agilent_HUMAN_G3V2	TCONS_l2_00014955	TCONS_l2_00014955	chr2	155792556	155801527	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10316_PI429285431	0.92220485	A	0.9071782	A	1.01047011209454	0	lncRNA	11844-1_{1..373}	lnc-GREM2-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GREM2-8:1	chr1	239416530	239416902	-	lnc-GREM2-8	lnc-GREM2-8:1	XLOC_001273	linc-ZP4-2	NA	NA	NA	inter
CUST_2345_PI429285431	1.7103503	A	0.91268885	A	1.73828115860496	0	lncRNA	2337-1_{1..608}	"transcript_id ""ENST00000502809.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502809.1"" | genecode_v17"	chr5	123791066	123791673	+	ENSG00000248600.1	ENST00000502809.1	CTD-2308B18.4	CTD-2308B18.4-001	NA	NA	NA	inter
CUST_16040_PI429285431	9.664404	P	9.632041	P	1.02268581870056	0	lncRNA	17738-1_{1..365}	lnc-DENND5A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DENND5A-1:1	chr11	  9142717	  9143081	-	lnc-DENND5A-1	lnc-DENND5A-1:1	XLOC_009370	linc-SCUBE2	NA	NA	NA	inter
CUST_29228_PI429285431	0.91489065	A	0.902117	A	1.00889333225315	0	lncRNA	30978-2_{3001..4860}	n326752|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006890|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006890|-0.1963390|-0.2815025	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326752|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006890|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006890|-0.1963390|-0.2815025	chr1	   670055	   671914	-	NA	NA	NA	NA	LOC100287654	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80chr1:657055-659924"	NA	inter
CUST_33837_PI429285431	5.879016	P	5.9401298	P	0.958523827008457	0	lncRNA	35384-2_{3001..3143}	n340623|AK128174|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3085|NULL|-1.0674300|-0.2430446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340623|AK128174|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3085|NULL|-1.0674300|-0.2430446	chr5	132582642	132582784	+	NA	NA	NA	NA	FSTL4	NA	chr5:132569642-132594473	inner
CUST_10104_PI429285431	0.902705	A	2.422905	A	0.348637581805994	0	lncRNA	11628-1_{1..637}	lnc-AP001496.1-8:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP001496.1-8:5	chr18	  5793586	  5794222	+	lnc-AP001496.1-8	lnc-AP001496.1-8:5	XLOC_012616	linc-ARHGAP28-4	NA	NA	NA	inter
CUST_35407_PI429285431	2.1721191	A	2.093472	A	1.05602727719148	0	lncRNA	36818-1_{1..1223}	n342467|CR618298|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4961|NULL|-0.9686410|-0.3184558	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342467|CR618298|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4961|NULL|-0.9686410|-0.3184558	chr16	 29215953	 29217175	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11289_PI429285431	6.5006485	P	6.8895683	P	0.76370120225862	0	lncRNA	12849-1_{1..2181}	lnc-ZNF487P-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ZNF487P-1:1	chr10	 43917118	 43919298	+	lnc-ZNF487P-1	lnc-ZNF487P-1:1	XLOC_008467	linc-ZNF485-2	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00"	NA	inter
CUST_44649_PI429285431	1.9744039	A	1.4771023	A	1.41157090596605	0	lncRNA	49213-1_{1..3000}	"gi|372620345|ref|NR_046000.1| Homo sapiens interferon regulatory factor 4 (IRF4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372620345|ref|NR_046000.1| Homo sapiens interferon regulatory factor 4 (IRF4), transcript variant 4, non-coding RNA"	Chr6	   391739	   394738	+	3662	NR_046000.1	NA	NA	NA	NA	NA	inter
CUST_51392_PI429285431	7.2142963	P	7.342904	P	0.914713786157255	0	lncRNA	54978-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00009670 range=chr16:31711913-31724332 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009670 range=chr16:31711913-31724332 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 31714913	 31717912	+	NA	NA	NA	NA	ZNF720	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40chr16:31724550-31734332"	NA	inter
CUST_2319_PI429285431	0.90314007	A	1.0947063	A	0.875654570071715	0	lncRNA	2311-1_{1..482}	"transcript_id ""ENST00000508766.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508766.1"" | genecode_v17"	chr5	115910178	115910659	+	ENSG00000249167.1	ENST00000508766.1	CTB-118N6.2	CTB-118N6.2-001	SEMA6A	NA	chr5:115900178-115910551	inner
CUST_2476_PI429285431	4.8250856	P	4.832103	P	0.995147719508958	0	lncRNA	2468-1_{1..556}	"transcript_id ""ENST00000503668.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000503668.1"" | genecode_v17"	chr6	  8652370	  8652925	+	ENSG00000251164.1	ENST00000503668.1	HULC	HULC-001	NA	NA	NA	inter
CUST_38181_PI429285431	9.605486	P	9.97223	P	0.775530808728508	0	lncRNA	39248-2_{3001..3637}	n381441|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jca.3||1.1260000|-0.2826674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n381441|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jca.3||1.1260000|-0.2826674	chr10	 45645841	 45646477	+	NA	NA	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00"	NA	inter
CUST_44705_PI429285431	1.6331967	A	1.0578318	A	1.49005429401266	0	lncRNA	49261-2_{3001..6000}	"gi|195222744|ref|NR_024053.1| Homo sapiens HLA complex group 18 (non-protein coding) (HCG18), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|195222744|ref|NR_024053.1| Homo sapiens HLA complex group 18 (non-protein coding) (HCG18), non-coding RNA"	NT_167245.1	  1551843	  1554842	-	414777	NR_024053.2	NA	NA	NA	NA	NA	Unknown
CUST_23957_PI429285431	2.6061199	A	3.0300112	P	0.745411354375645	0	lncRNA	25513-1_{1..553}	lnc-FAM35B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM35B-1:2	chr10	 46953287	 46953839	+	lnc-FAM35B-1	lnc-FAM35B-1:2	ENSG00000231187.2	RP11-38L15.3	SYT15	NA	chr10:46955444-46963608	inter
CUST_50425_PI429285431	1.1739812	A	1.2157433	A	0.971467677076684	0	lncRNA	54129-1_{1..1615}	hg19_lincRNAsTranscripts_TCONS_l2_00030168 range=chrX:27847891-27851835 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030168 range=chrX:27847891-27851835 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 27847891	 27849505	+	NA	NA	NA	NA	MAGEB10	NA	chrX:27837891-27841131	inter
CUST_43257_PI429285431	6.3987713	P	6.367941	P	1.02159990783598	0	lncRNA	48075-1_{1..530}	ENST00000602568 havana:sense_intronic chromosome:GRCh37:21:38473114:38473643:1 gene:ENSG00000270116 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602568 havana:sense_intronic chromosome:GRCh37:21:38473114:38473643:1 gene:ENSG00000270116 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr21	 38473114	 38473643	+	ENSG00000270116	ENST00000602568	NA	NA	TTC3	NA	chr21:38463114-38483643	inner
CUST_5255_PI429285431	4.2162604	P	4.5778227	P	0.778321276035824	0	lncRNA	5195-1_{1..546}	"transcript_id ""ENST00000560732.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560732.1"" | genecode_v17"	chr15	 79528908	 79529453	-	ENSG00000259234.1	ENST00000560732.1	RP11-17L5.4	RP11-17L5.4-002	ANKRD34C	"hg19_refFlat_HNRNPCL1:range=chr1:12907261-129081425'pad=0,hg19_refFlat_HNRNPCL1:range=chr1:12907261-129081425'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_LOC649330:range=chr1:12907261-129081425'pad=0,hg19_refFlat_LOC649330:range=chr1:12907261-129081425'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_HNRNPC:range=chr14:21679382-217023525'pad=0,hg19_refFlat_HNRNPC:range=chr14:21679382-217023525'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_LOC440563:range=chr1:13182991-131838725'pad=0,hg19_refFlat_LOC440563:range=chr1:13182991-131838725'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70chr15:79575146-79586173"	NA	inter
LNCA_21_P0007769	0.91386414	A	0.9029995	A	1.00755922233371	0	lncRNA	TCONS_00020939	NA	NA	NA	NA	XLOC_010210	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010210), lincRNA [TCONS_00020939]"	chr12:116796795-116796736	hs|12q24.21	Agilent_HUMAN_G3V2	TCONS_00020939	TCONS_00020939	chr12	116796736	116796795	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8234_PI429285431	0.9033922	A	0.93029386	A	0.981525966401256	0	lncRNA	9824-1_{1..735}	lnc-ZNF572-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF572-1:13	chr8	125957880	125958614	+	lnc-ZNF572-1	lnc-ZNF572-1:13	ENSG00000249816	ENSG00000249816.2	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40"	NA	inter
LNCA_21_P0009914	0.91471493	A	0.9037934	A	1.00759895434408	0	lncRNA	ENST00000433766	NA	AK056050	NA	Hs.130660	XLOC_013804	NA	ENST00000433766	THC2520592	NA	"BROAD Institute lincRNA (XLOC_013804), lincRNA [TCONS_00028069]"	chr20:54036936-54036877	hs|20q13.2	Agilent_HUMAN_G3V2	ENST00000433766	ENST00000433766	chr20	 54036877	 54036936	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15246_PI429285431	1.2491732	A	0.92650115	A	1.25064475421202	0	lncRNA	16917-1_{1..450}	lnc-C9orf104-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C9orf104-2:1	chr9	137413070	137413519	-	lnc-C9orf104-2	lnc-C9orf104-2:1	XLOC_007885	linc-BRD3-3	NA	NA	NA	inter
CUST_25493_PI429285431	5.781964	P	5.9766045	P	0.873790605535747	0	lncRNA	27023-1_{1..435}	lnc-GMEB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GMEB2-1:1	chr20	 62199711	 62200145	-	lnc-GMEB2-1	lnc-GMEB2-1:1	ENSG00000241624.1	RP4-697K14.12	PRIC285	NA	chr20:62189711-62205592	inner
CUST_34946_PI429285431	1.7429262	A	0.9001353	A	1.79351635347009	0	lncRNA	36364-1_{1..3000}	n341865|BX648461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4345|NULL|-1.2056900|-0.3930871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341865|BX648461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4345|NULL|-1.2056900|-0.3930871	chr6	 46721802	 46724801	-	NA	NA	NA	NA	LOC100287718	"hg19_refFlat_ANKRD66:range=chr6:46714659-467266585'pad=0,hg19_refFlat_ANKRD66:range=chr6:46714659-467266585'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.50chr6:46714654-46726955"	NA	inner
CUST_2243_PI429285431	1.0737767	A	1.0281321	A	1.03214424109729	0	lncRNA	2235-1_{1..876}	"transcript_id ""ENST00000509783.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509783.1"" | genecode_v17"	chr5	 87962697	 87963572	-	ENSG00000245526.3	ENST00000509783.1	LINC00461	LINC00461-015	NA	NA	NA	inter
CUST_19630_PI429285431	6.0705147	P	5.8150225	P	1.19374293931464	0	lncRNA	21286-1_{1..200}	lnc-MNAT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MNAT1-1:1	chr14	 61449226	 61449425	+	lnc-MNAT1-1	lnc-MNAT1-1:1	ENSG00000258892.1	RP11-193F5.1	SLC38A6	NA	chr14:61447832-61459303	inter
CUST_29991_PI429285431	0.903031	A	0.89816606	A	1.00337781143559	0	lncRNA	31757-1_{1..280}	n334360|S75615|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216614|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216614|1.7285700|-0.1060292	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334360|S75615|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216614|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216614|1.7285700|-0.1060292	chr17	 26101340	 26101619	-	NA	NA	NA	NA	NOS2	NA	chr17:26091340-26115950	inner
CUST_1929_PI429285431	0.9145517	A	0.9147755	A	0.999844885692459	0	lncRNA	1921-1_{1..451}	"transcript_id ""ENST00000515703.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515703.1"" | genecode_v17"	chr4	147031975	147032425	-	ENSG00000248809.1	ENST00000515703.1	RP11-6L6.3	RP11-6L6.3-004	NA	NA	NA	inter
CUST_47879_PI429285431	3.4528465	P	3.0386622	A	1.33254504288479	0	lncRNA	51775-1_{1..3000}	"gi|410171550|ref|XR_171243.1| PREDICTED: Homo sapiens chromosome 1 open reading frame 81 (C1orf81), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410171550|ref|XR_171243.1| PREDICTED: Homo sapiens chromosome 1 open reading frame 81 (C1orf81), misc_RNA"	NA	NA	NA	NA	NA	XR_171243.1	NA	NA	NA	NA	NA	Unknown
CUST_23379_PI429285431	4.743623	P	4.54968	P	1.14388577808249	0	lncRNA	24947-1_{1..357}	lnc-GRID2IP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GRID2IP-1:1	chr7	  6628326	  6628682	-	lnc-GRID2IP-1	lnc-GRID2IP-1:1	ENSG00000232581.1	AC079742.4	C7orf26	"hg19_refFlat_ZDHHC4:range=chr7:6620193-66285415'pad=0,hg19_refFlat_ZDHHC4:range=chr7:6620193-66285415'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10chr7:6629915-6638605"	NA	inner
LNCA_21_P0009821	4.433883	P	4.281437	P	1.1114522739544	0	lncRNA	XR_132670	XR_132670	XR_132670	NA	NA	LOC100652730	uncharacterized LOC100652730	ENST00000412500	THC2635964	NA	"PREDICTED: Homo sapiens hypothetical LOC100652730 (LOC100652730), miscRNA [XR_132670]"	chr20:61405847-61405788	hs|20q13.33	Agilent_HUMAN_G3V2	XR_132670	XR_132670	chr20	 61405788	 61405847	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40187_PI429285431	6.9749537	P	7.071971	P	0.934963986113874	0	lncRNA	41021-1_{1..1567}	n407968|NR_027683|lncRNA|Homosapiens||RefGeneNoncode|NR_027683||3.0363100|-0.1991274	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407968|NR_027683|lncRNA|Homosapiens||RefGeneNoncode|NR_027683||3.0363100|-0.1991274	chr17	  5322960	  5324526	+	NA	NA	NA	NA	RPAIN	NA	chr17:5322961-5336340	inner
CUST_50839_PI429285431	1.1831154	A	0.9125295	A	1.20629762370603	0	lncRNA	54484-1_{1..2726}	hg19_lincRNAsTranscripts_TCONS_l2_00004587 range=chr11:66176745-66186277 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004587 range=chr11:66176745-66186277 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 66176745	 66179470	+	NA	NA	NA	NA	NPAS4	NA	chr11:66188475-66194177	inter
CUST_51079_PI429285431	8.454975	P	8.704854	P	0.840966944873866	0	lncRNA	54717-1_{1..2763}	hg19_lincRNAsTranscripts_TCONS_l2_00007201 range=chr13:52741775-52768558 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007201 range=chr13:52741775-52768558 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 52741775	 52744537	-	NA	NA	NA	NA	NEK3	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20chr13:52731775-52733996"	NA	inter
CUST_1300_PI429285431	5.4620123	P	5.688687	P	0.854602415584103	0	lncRNA	1290-1_{1..1897}	"transcript_id ""ENST00000383808.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000383808.2"" | genecode_v17"	chr3	 10048102	 10049998	-	ENSG00000206567.5	ENST00000383808.2	AC022007.5	AC022007.5-001	LOC401052	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90chr3:10048102-10052779"	NA	inner
CUST_7518_PI429285431	4.2187815	P	4.702538	P	0.715113180755457	0	lncRNA	9158-1_{1..856}	lnc-USP35-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP35-1:2	chr11	 77852552	 77853407	+	lnc-USP35-1	lnc-USP35-1:2	ENSG00000246174	RP11-705O3.1	ALG8	NA	chr11:77842552-77850699	inter
CUST_34064_PI429285431	0.9191691	A	1.0339481	A	0.923523770369706	0	lncRNA	35593-1_{1..2865}	n340885|AK022247|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3350|NULL|-0.9686980|-0.2979813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340885|AK022247|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3350|NULL|-0.9686980|-0.2979813	chr17	 75975718	 75978582	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30478_PI429285431	9.725211	P	9.251361	P	1.38881073072185	0	lncRNA	32258-1_{1..290}	n335627|CR603473|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000282668|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000282668|1.6391500|-0.1916428	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335627|CR603473|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000282668|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000282668|1.6391500|-0.1916428	chr2	 62227828	 62228117	+	NA	NA	NA	NA	COMMD1	NA	chr2:62217828-62238118	inner
CUST_4439_PI429285431	7.228565	P	7.786989	P	0.679043545847197	0	lncRNA	4389-1_{1..1220}	"transcript_id ""ENST00000542933.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000542933.1"" | genecode_v17"	chr12	122233173	122234392	-	ENSG00000212694.4	ENST00000542933.1	AC084018.1	AC084018.1-006	SETD1B	NA	chr12:122242638-122250816	inter
CUST_48730_PI429285431	3.9442825	P	5.4371443	P	0.355307045071768	0	lncRNA	52569-2_{3001..5013}	hg19_lincRNAsTranscripts_TCONS_l2_00014897 range=chr2:131174351-131199391 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014897 range=chr2:131174351-131199391 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	131177351	131179363	-	NA	NA	NA	NA	LOC646802	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70chr2:131198341-131198697"	NA	inter
CUST_32795_PI429285431	4.280412	P	4.453932	P	0.886676656888264	0	lncRNA	34430-1_{1..221}	n339440|U03241|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1872|NULL|-1.2740000|-0.2104440	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339440|U03241|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1872|NULL|-1.2740000|-0.2104440	chr21	 20289530	 20289750	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48361_PI429285431	1.5496485	A	0.91870594	A	1.54857639887904	0	lncRNA	52217-1_{1..1627}	hg19_lincRNAsTranscripts_TCONS_l2_00001335 range=chr1:87992047-87995624 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001335 range=chr1:87992047-87995624 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 87992047	 87993673	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20"	NA	inter
CUST_52096_PI429285431	9.283045	P	9.280702	P	1.00162536331745	0	lncRNA	55622-1_{1..361}	hg19_lincRNAsTranscripts_TCONS_l2_00017865 range=chr22:17182935-17185326 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017865 range=chr22:17182935-17185326 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 17182935	 17183295	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012981	0.90318865	A	0.9150259	A	0.991828612319324	0	lncRNA	ENST00000508395	NA	NA	NA	NA	XLOC_l2_011987	NA	ENST00000508395	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011987), lincRNA [TCONS_l2_00023711]"	chr5:34200965-34182953	hs|5p13.2	Agilent_HUMAN_G3V2	ENST00000508395	ENST00000508395	chr5	 34182953	 34200965	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21861_PI429285431	0.8975877	A	0.9023123	A	0.996730513280845	0	lncRNA	23471-1_{1..778}	lnc-NKIRAS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKIRAS1-1:1	chr3	 23848310	 23849087	-	lnc-NKIRAS1-1	lnc-NKIRAS1-1:1	ENSG00000223791.1	UBE2E1-AS1	UBE2E1	NA	chr3:23847384-23858396	inner
CUST_15044_PI429285431	0.9080918	A	0.9045214	A	1.00247787757022	0	lncRNA	16707-1_{1..861}	lnc-RWDD3-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RWDD3-7:2	chr1	 96488089	 96488949	+	lnc-RWDD3-7	lnc-RWDD3-7:2	XLOC_000312	linc-PTBP2-2	NA	NA	NA	inter
LNCA_21_P0010559	0.9112181	A	0.9196748	A	0.994155408703899	0	lncRNA	TCONS_l2_00000590	NA	NA	NA	NA	XLOC_l2_000421	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000421), lincRNA [TCONS_l2_00000590]"	chr1:149239626-149239685	hs|1q21.2	Agilent_HUMAN_G3V2	TCONS_l2_00000590	TCONS_l2_00000590	chr1	149239626	149239685	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18430_PI429285431	3.4477227	P	3.40368	P	1.03099883321221	0	lncRNA	20153-1_{1..2162}	lnc-TAF9-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TAF9-2:2	chr5	 68931794	 68933955	-	lnc-TAF9-2	lnc-TAF9-2:2	ENSG00000250552	AC139495.1	LOC100652868	NA	chr5:68939262-68939633	inter
CUST_45428_PI429285431	0.9031011	A	1.5526171	A	0.637494146387751	0	lncRNA	49847-3_{6001..6351}	"gi|283806708|ref|NR_033234.1| Homo sapiens spermatid perinuclear RNA binding protein (STRBP), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|283806708|ref|NR_033234.1| Homo sapiens spermatid perinuclear RNA binding protein (STRBP), transcript variant 3, non-coding RNA"	Chr9	125889899	125890249	-	55342	NR_033234.1	NA	NA	NA	NA	NA	inter
CUST_44282_PI429285431	1.7170409	A	0.9931844	A	1.65159104352167	0	lncRNA	48918-1_{1..3000}	"gi|283945508|ref|NR_021485.2| Homo sapiens EGF-like and EMI domain containing 1, pseudogene (EGFEM1P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|283945508|ref|NR_021485.2| Homo sapiens EGF-like and EMI domain containing 1, pseudogene (EGFEM1P), non-coding RNA"	Chr3	167967310	167970309	+	93556	NR_021485.2	NA	NA	NA	"hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20"	NA	inter
CUST_33151_PI429285431	10.484715	P	10.615477	P	0.913348911867484	0	lncRNA	34747-1_{1..975}	n339841|CR614442|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2289|NULL|4.5492700|-0.0923903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339841|CR614442|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2289|NULL|4.5492700|-0.0923903	chr18	 34366799	 34367773	-	NA	NA	NA	NA	KIAA1328	NA	chr18:34409080-34418805	inner
CUST_1617_PI429285431	1.2224237	A	1.2711935	A	0.966760343437576	0	lncRNA	1603-1_{1..1771}	"transcript_id ""ENST00000440556.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440556.1"" | genecode_v17"	chr3	193994471	193996241	+	ENSG00000228271.1	ENST00000440556.1	RP11-513G11.2	RP11-513G11.2-001	NA	NA	NA	inter
CUST_17228_PI429285431	1.1353759	A	0.91865087	A	1.16209259774242	0	lncRNA	18943-2_{3001..6000}	lnc-C3orf79-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C3orf79-2:1	chr3	153107036	153110035	+	lnc-C3orf79-2	lnc-C3orf79-2:1	XLOC_002882	linc-C3orf79-2	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20"	NA	inter
CUST_4577_PI429285431	0.9129168	A	0.904487	A	1.00586019626284	0	lncRNA	4526-1_{1..1056}	"transcript_id ""ENST00000420219.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420219.1"" | genecode_v17"	chr13	 30931879	 30932934	-	ENSG00000238121.1	ENST00000420219.1	LINC00426	LINC00426-003	NA	NA	NA	inter
CUST_47597_PI429285431	0.91905683	A	0.9101629	A	1.00618384400748	0	lncRNA	51600-1_{1..1228}	"gi|221136921|ref|NR_002226.2| Homo sapiens inhibitor of growth family, X-linked, pseudogene (INGX), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|221136921|ref|NR_002226.2| Homo sapiens inhibitor of growth family, X-linked, pseudogene (INGX), non-coding RNA"	ChrX	 70711377	 70712604	-	27160	NR_002226.2	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70"	NA	inter
CUST_2425_PI429285431	0.90130186	A	1.0958226	A	0.873863143046058	0	lncRNA	2417-1_{1..416}	"transcript_id ""ENST00000517916.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517916.1"" | genecode_v17"	chr5	171984395	171984810	-	ENSG00000254299.1	ENST00000517916.1	CTB-54I1.1	CTB-54I1.1-001	NA	NA	NA	inter
CUST_1240_PI429285431	0.91639936	A	0.9246868	A	0.994272051938284	0	lncRNA	1232-1_{1..478}	"transcript_id ""ENST00000443971.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443971.1"" | genecode_v17"	chr2	216734646	216735123	+	ENSG00000227824.1	ENST00000443971.1	AC122136.2	AC122136.2-001	NA	NA	NA	inter
CUST_22583_PI429285431	0.8978362	A	1.0709625	A	0.886918656912842	0	lncRNA	24168-1_{1..640}	lnc-SNX20-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNX20-3:1	chr16	 50776582	 50777221	-	lnc-SNX20-3	lnc-SNX20-3:1	ENSG00000260929.1	RP11-327F22.1	CYLD	NA	chr16:50775961-50786726	inner
CUST_51209_PI429285431	4.039326	P	3.4718611	P	1.48191726021621	0	lncRNA	54827-1_{1..2390}	hg19_lincRNAsTranscripts_TCONS_l2_00009245 range=chr15:85053458-85070889 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009245 range=chr15:85053458-85070889 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 85053458	 85055847	-	NA	NA	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00"	NA	inter
LNCA_33_P3224095	1.7006128	A	2.817638	A	0.461043505696628	0	lncRNA	XR_112513	XR_112513	XR_112513	   728290	Hs.563132	LOC728290	uncharacterized LOC728290	ENST00000482617	THC2709952	NA	"PREDICTED: Homo sapiens hypothetical LOC728290 (LOC728290), miscRNA [XR_112513]"	chr3:81144517-81144576	hs|3p12.2	Agilent_HUMAN_G3V2	XR_112513	XR_112513	chr3	 81144517	 81144576	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13652_PI429285431	3.5299888	P	3.3234391	P	1.15392519335297	0	lncRNA	15290-1_{1..414}	lnc-UBR3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBR3-1:1	chr2	170961372	170961785	+	lnc-UBR3-1	lnc-UBR3-1:1	XLOC_001745	linc-MYO3B-2	NA	NA	NA	inter
CUST_5602_PI429285431	2.1274312	A	2.3855042	A	0.836204087130672	0	lncRNA	5531-1_{1..434}	"transcript_id ""ENST00000567721.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567721.1"" | genecode_v17"	chr16	 71335486	 71335919	+	ENSG00000261260.1	ENST00000567721.1	CTD-2520I13.1	CTD-2520I13.1-001	NA	NA	NA	inter
CUST_41495_PI429285431	1.5783954	A	1.5939739	A	0.9892598978561	0	lncRNA	42709-1_{1..77}	ENST00000362205 ncrna:miRNA chromosome:GRCh37:3:38010895:38010971:1 gene:ENSG00000199075 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362205 ncrna:miRNA chromosome:GRCh37:3:38010895:38010971:1 gene:ENSG00000199075 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 38010895	 38010971	+	ENSG00000199075	ENST00000362205	NA	NA	CTDSPL	NA	chr3:38000895-38020971	inner
CUST_8543_PI429285431	0.921548	A	0.92633164	A	0.996689724504462	0	lncRNA	10102-1_{1..327}	lnc-TGFBRAP1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TGFBRAP1-5:3	chr2	105483897	105484223	-	lnc-TGFBRAP1-5	lnc-TGFBRAP1-5:3	ENSG00000239587	AC018730.4	NA	NA	NA	inter
LNCA_21_P0002789	2.421204	A	0.91423786	A	2.84211738118864	0	lncRNA	ENST00000470024	NA	NA	NA	NA	XLOC_002887	NA	ENST00000470024	NA	NA	"BROAD Institute lincRNA (XLOC_002887), lincRNA [TCONS_00005632]"	chr3:155011743-155011802	hs|3q25.31	Agilent_HUMAN_G3V2	ENST00000470024	ENST00000470024	chr3	155011743	155011802	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001015	0.9186541	A	0.91077024	A	1.00547963390467	0	lncRNA	ENST00000422157	NA	NA	NA	NA	XLOC_000388	NA	ENST00000422157	THC2694823	NA	"BROAD Institute lincRNA (XLOC_000388), lincRNA [TCONS_00000299]"	chr1:145955044-145955103	hs|1q21.1	Agilent_HUMAN_G3V2	ENST00000422157	ENST00000422157	chr1	145955044	145955103	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42198_PI429285431	0.90082353	A	1.2217845	A	0.800536467704265	0	lncRNA	44269-1_{1..70}	ENST00000584832 ncrna:miRNA chromosome:GRCh37:4:175344946:175345015:1 gene:ENSG00000265846 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584832 ncrna:miRNA chromosome:GRCh37:4:175344946:175345015:1 gene:ENSG00000265846 gene_biotype:miRNA transcript_biotype:miRNA	chr4	175344946	175345015	+	ENSG00000265846	ENST00000584832	NA	NA	NA	NA	NA	inter
CUST_12661_PI429285431	5.0985928	P	5.148429	P	0.966046005154753	0	lncRNA	14277-1_{1..440}	lnc-NUMB-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUMB-1:2	chr14	 73930181	 73930620	-	lnc-NUMB-1	lnc-NUMB-1:2	XLOC_011068	linc-NUMB	NUMB	NA	chr14:73920181-73925286	inter
CUST_11372_PI429285431	7.398105	P	7.6059246	P	0.865844827236096	0	lncRNA	12936-1_{1..292}	lnc-RP3-377D14.1.1-7:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP3-377D14.1.1-7:9	chr1	142625059	142625350	+	lnc-RP3-377D14.1.1-7	lnc-RP3-377D14.1.1-7:9	XLOC_000377	linc-NBPF9-7	NA	NA	NA	inter
CUST_15363_PI429285431	2.4203217	A	2.6131322	A	0.874899676648013	0	lncRNA	17046-1_{1..421}	lnc-CNN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CNN1-1:1	chr19	 11646641	 11647061	+	lnc-CNN1-1	lnc-CNN1-1:1	XLOC_012965	linc-CNN1	ECSIT	NA	chr19:11636641-11639987	inter
CUST_41400_PI429285431	0.9406958	A	0.96282417	A	0.984778814063988	0	lncRNA	42514-1_{1..64}	ENST00000581228 ncrna:miRNA chromosome:GRCh37:20:59139620:59139683:1 gene:ENSG00000265617 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581228 ncrna:miRNA chromosome:GRCh37:20:59139620:59139683:1 gene:ENSG00000265617 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 59139620	 59139683	+	ENSG00000265617	ENST00000581228	NA	NA	NA	NA	NA	inter
CUST_12238_PI429285431	6.6364946	P	6.2927814	P	1.26901858688596	0	lncRNA	13844-1_{1..421}	lnc-TMEM132C-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132C-5:1	chr12	127836503	127836923	+	lnc-TMEM132C-5	lnc-TMEM132C-5:1	XLOC_009945	linc-TMEM132C-4	NA	NA	NA	inter
CUST_41648_PI429285431	15.17998	P	15.15169	P	1.01980265566374	0	lncRNA	43055-1_{1..85}	ENST00000582533 ncrna:miRNA chromosome:GRCh37:7:102106189:102106273:1 gene:ENSG00000266715 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582533 ncrna:miRNA chromosome:GRCh37:7:102106189:102106273:1 gene:ENSG00000266715 gene_biotype:miRNA transcript_biotype:miRNA	chr7	102106189	102106273	+	ENSG00000266715	ENST00000582533	NA	NA	ALKBH4	NA	chr7:102096667-102105321	inter
CUST_1750_PI429285431	5.4304204	P	5.64475	P	0.861946601071171	0	lncRNA	1736-1_{1..1061}	"transcript_id ""ENST00000533736.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533736.1"" | genecode_v17"	chr4	 39640760	 39641820	+	ENSG00000255458.1	ENST00000533736.1	RP11-539G18.2	RP11-539G18.2-001	C4orf34	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60chr4:39630760-39640481"	NA	inter
CUST_2602_PI429285431	2.0313158	A	2.596945	A	0.675660677567573	0	lncRNA	2589-1_{1..327}	"transcript_id ""ENST00000430898.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430898.1"" | genecode_v17"	chr6	109080664	109080990	+	ENSG00000203801.4	ENST00000430898.1	LINC00222	LINC00222-001	NA	NA	NA	inter
LNCA_21_P0003108	2.0919118	A	2.366019	A	0.826961918442521	0	lncRNA	TCONS_00006461	NA	NA	NA	NA	XLOC_003073	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003073), lincRNA [TCONS_00006461]"	chr3:28180572-28179945	hs|3p24.1	Agilent_HUMAN_G3V2	TCONS_00006461	TCONS_00006461	chr3	 28179945	 28180572	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39220_PI429285431	1.6290147	A	1.3335398	A	1.22728890432529	0	lncRNA	40193-1_{1..1887}	n386034|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zgg.1||-1.1177000|-0.3598356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n386034|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zgg.1||-1.1177000|-0.3598356	chr12	  8931626	  8933512	+	NA	NA	NA	NA	RIMKLB	NA	chr12:8921626-8929787	inter
LNCA_21_P0006786	0.9120341	A	0.9023297	A	1.00674925173294	0	lncRNA	ENST00000450669	NA	NA	NA	NA	XLOC_008924	NA	ENST00000450669	NA	NA	"BROAD Institute lincRNA (XLOC_008924), lincRNA [TCONS_00018033]"	chr10:103082676-103082617	hs|10q24.32	Agilent_HUMAN_G3V2	ENST00000450669	ENST00000450669	chr10	103082617	103082676	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38065_PI429285431	1.6583273	A	1.9553949	A	0.813905047232096	0	lncRNA	39143-1_{1..406}	n380993|NULL|lncRNA|Homosapiens||EnsemblNoncode|ENST00000552875||-0.9750010|-0.0980114	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n380993|NULL|lncRNA|Homosapiens||EnsemblNoncode|ENST00000552875||-0.9750010|-0.0980114	chr12	 98962244	 98962649	-	NA	NA	NA	NA	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80"	NA	inter
CUST_38697_PI429285431	2.7350755	A	3.1084056	A	0.77199847354459	0	lncRNA	39693-1_{1..3000}	n384099|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zuh.2||3.3641400|-0.2249792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384099|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zuh.2||3.3641400|-0.2249792	chr22	 21400248	 21403247	+	NA	NA	NA	NA	NA	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40"	NA	inter
CUST_22188_PI429285431	4.3808155	P	4.54841	P	0.890325943052394	0	lncRNA	23788-1_{1..523}	lnc-TCTN3-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCTN3-1:8	chr10	 97802542	 97803064	-	lnc-TCTN3-1	lnc-TCTN3-1:8	ENSG00000226688.1	RP11-429G19.2	CCNJ	NA	chr10:97803159-97812602	inter
CUST_18747_PI429285431	3.3017795	P	3.2655206	P	1.0254512445562	0	lncRNA	20443-1_{1..565}	lnc-HSCB-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HSCB-1:12	chr22	 28318006	 28318570	+	lnc-HSCB-1	lnc-HSCB-1:12	ENSG00000235954	TTC28-AS1	PITPNB	NA	chr22:28308006-28315255	inter
CUST_18036_PI429285431	0.8929176	A	0.8881903	A	1.00328208896457	0	lncRNA	19771-1_{1..2071}	lnc-BHLHE23-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BHLHE23-1:3	chr20	 61667400	 61669470	-	lnc-BHLHE23-1	lnc-BHLHE23-1:3	XLOC_013840	linc-BHLHE23-2	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50"	NA	inter
CUST_12021_PI429285431	1.5057309	A	1.049169	A	1.37226765450534	0	lncRNA	13603-1_{1..327}	lnc-CRYBA4-1:49	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:49	chr22	 27247872	 27248198	+	lnc-CRYBA4-1	lnc-CRYBA4-1:49	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
CUST_11670_PI429285431	5.6145744	P	5.6791744	P	0.956210398660747	0	lncRNA	13248-1_{1..300}	lnc-BNIP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BNIP3-1:1	chr10	133731908	133732207	-	lnc-BNIP3-1	lnc-BNIP3-1:1	XLOC_009001	linc-TCERG1L-1	NA	NA	NA	inter
CUST_44166_PI429285431	2.0266438	A	2.5398133	A	0.700681397734908	0	lncRNA	48825-1_{1..2588}	"gi|386365498|ref|NR_047690.1| Homo sapiens hyaluronoglucosaminidase 1 (HYAL1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386365498|ref|NR_047690.1| Homo sapiens hyaluronoglucosaminidase 1 (HYAL1), transcript variant 1, non-coding RNA"	NW_003871059.1	    69737	    72324	-	3373	NR_047690.1	NA	NA	NA	NA	NA	Unknown
CUST_8465_PI429285431	0.9085493	A	1.0551027	A	0.903406124847056	0	lncRNA	10032-1_{1..593}	lnc-ALX4-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALX4-5:1	chr11	 43902124	 43902716	-	lnc-ALX4-5	lnc-ALX4-5:1	ENSG00000246250	ENSG00000246250.2	ALKBH3	NA	chr11:43902357-43912276	inter
LNCA_21_P0012060	0.907764	A	1.6877007	A	0.582392345846319	0	lncRNA	ENST00000412424	NA	NA	NA	NA	XLOC_l2_007931	NA	ENST00000412424	THC2624926	NA	"BROAD Institute lincRNA (XLOC_l2_007931), lincRNA [TCONS_l2_00015740]"	chr2:21861362-21861303	hs|2p24.1	Agilent_HUMAN_G3V2	ENST00000412424	ENST00000412424	chr2	 21861303	 21861362	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4107_PI429285431	0.89785147	A	0.89244866	A	1.00375196357759	0	lncRNA	4068-1_{1..808}	"transcript_id ""ENST00000564354.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564354.1"" | genecode_v17"	chr11	125742926	125743733	-	ENSG00000260209.1	ENST00000564354.1	RP11-680F20.10	RP11-680F20.10-002	HYLS1	NA	chr11:125753509-125754293	inter
CUST_28578_PI429285431	4.779515	P	4.876157	P	0.935207237541371	0	lncRNA	30258-1_{1..385}	n325939|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048971|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048971|-0.9249730|-0.1422943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325939|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048971|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048971|-0.9249730|-0.1422943	chr10	 81060516	 81060900	-	NA	NA	NA	NA	ZMIZ1	"hg19_refFlat_ZMIZ1:range=chr10:80961390-810725065'pad=0,hg19_refFlat_ZMIZ1:range=chr10:80961390-810725065'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20;hg19_refFlat_ZMIZ2:range=chr7:44795849-448072225'pad=0,hg19_refFlat_ZMIZ2:range=chr7:44795849-448072225'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40chr10:81050516-81071948"	NA	inner
CUST_40130_PI429285431	1.372492	A	1.8511539	A	0.717642929415679	0	lncRNA	40970-1_{1..898}	n407704|NR_027173|lncRNA|Homosapiens||RefGeneNoncode|NR_027173||0.7457220|-0.1804869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n407704|NR_027173|lncRNA|Homosapiens||RefGeneNoncode|NR_027173||0.7457220|-0.1804869	chr17	 16342300	 16343197	+	NA	NA	NA	NA	C17orf76	NA	chr17:16345328-16383962	inner
LNCA_21_P0010886	7.692014	P	7.6791224	P	1.00897581942458	0	lncRNA	TCONS_l2_00003633	NA	NA	NA	NA	XLOC_l2_002033	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002033), lincRNA [TCONS_l2_00003633]"	chr10:81526072-81422977	hs|10q22.3	Agilent_HUMAN_G3V2	TCONS_l2_00003633	TCONS_l2_00003633	chr10	 81422977	 81526072	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6150_PI429285431	5.952741	P	6.256894	P	0.809917576088438	0	lncRNA	6076-1_{1..453}	"transcript_id ""ENST00000586982.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586982.1"" | genecode_v17"	chr18	 33531766	 33532218	-	ENSG00000267627.1	ENST00000586982.1	RP11-905K4.1	RP11-905K4.1-002	C18orf21	NA	chr18:33552588-33555803	inter
CUST_43203_PI429285431	5.442729	P	5.636601	P	0.874256183460223	0	lncRNA	48017-1_{1..540}	ENST00000598988 havana:sense_intronic chromosome:GRCh37:19:41905277:41906270:1 gene:ENSG00000268987 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000598988 havana:sense_intronic chromosome:GRCh37:19:41905277:41906270:1 gene:ENSG00000268987 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 41905277	 41905816	+	ENSG00000268987	ENST00000598988	NA	NA	BCKDHA	NA	chr19:41903694-41916270	inner
CUST_34689_PI429285431	0.8911823	A	0.8893552	A	1.00126725149906	0	lncRNA	36141-1_{1..2137}	n341594|AK022403|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4065|NULL|-0.8766730|-0.3115825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341594|AK022403|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4065|NULL|-0.8766730|-0.3115825	chr8	121048079	121050215	+	NA	NA	NA	NA	DEPTOR	NA	chr8:121038079-121059710	inner
CUST_35784_PI429285431	4.8230963	P	2.8205645	A	4.00702580315006	0	lncRNA	37196-3_{6001..7153}	n344466|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_14|NULL|-1.2771200|-0.3167784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344466|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_14|NULL|-1.2771200|-0.3167784	NA	     6000	     7152	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31087_PI429285431	2.28679	A	1.5347884	A	1.68412777497327	0	lncRNA	32878-1_{1..626}	n337366|DQ648894|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393012|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393012|1.5889600|-0.1889403	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337366|DQ648894|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393012|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393012|1.5889600|-0.1889403	chr2	 47630344	 47630969	+	NA	NA	NA	NA	MSH2	NA	chr2:47630263-47651537	inner
CUST_24281_PI429285431	0.9094173	A	0.9098605	A	0.999692844351534	0	lncRNA	25832-1_{1..674}	lnc-GPER-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPER-3:4	chr7	  1202979	  1203652	+	lnc-GPER-3	lnc-GPER-3:4	ENSG00000229043.1	AC091729.9	ZFAND2A	NA	chr7:1192979-1199855	inter
CUST_41521_PI429285431	3.5103874	P	3.5546956	P	0.969754721487988	0	lncRNA	42760-1_{1..66}	ENST00000578933 ncrna:miRNA chromosome:GRCh37:9:35608091:35608156:1 gene:ENSG00000263892 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578933 ncrna:miRNA chromosome:GRCh37:9:35608091:35608156:1 gene:ENSG00000263892 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 35608091	 35608156	+	ENSG00000263892	ENST00000578933	NA	NA	TESK1	NA	chr9:35598091-35610038	inter
CUST_5576_PI429285431	2.4151826	A	2.9471369	P	0.691617222397012	0	lncRNA	5505-1_{1..571}	"transcript_id ""ENST00000564290.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564290.1"" | genecode_v17"	chr16	 63564992	 63565562	-	ENSG00000260658.1	ENST00000564290.1	RP11-368L12.1	RP11-368L12.1-002	NA	NA	NA	inter
CUST_33129_PI429285431	11.620564	P	11.496299	P	1.08995230062855	0	lncRNA	34725-2_{3001..3316}	n339818|AK124319|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2265|NULL|0.3534880|-0.2769077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339818|AK124319|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2265|NULL|0.3534880|-0.2769077	chr18	 24490308	 24490623	-	NA	NA	NA	NA	CHST9	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80chr18:24495595-24500602"	NA	inter
CUST_6567_PI429285431	2.0127993	A	2.1449265	A	0.912485032723069	0	lncRNA	6516-1_{1..552}	"transcript_id ""ENST00000596964.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596964.1"" | genecode_v17"	chr19	 52343024	 52343575	-	ENSG00000268316.1	ENST00000596964.1	AC006272.2	AC006272.2-001	NA	NA	NA	inter
CUST_34109_PI429285431	6.1184745	P	6.296872	P	0.883684019591383	0	lncRNA	35632-1_{1..2198}	n340937|AL832075|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3402|NULL|0.3862850|-0.0935861	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340937|AL832075|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3402|NULL|0.3862850|-0.0935861	chr11	  1781577	  1783774	+	NA	NA	NA	NA	IFITM10	"hg19_refFlat_CTSD:range=chr11:1774733-17850895'pad=0,hg19_refFlat_CTSD:range=chr11:1774733-17850895'pad=0 3'pad=0 strand=- repeatMasking=none,-95.70chr11:1771577-1771824"	NA	inner
CUST_4261_PI429285431	5.513362	P	5.0306673	P	1.39735123611845	0	lncRNA	4218-1_{1..427}	"transcript_id ""ENST00000562996.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562996.1"" | genecode_v17"	chr12	 52242007	 52242433	+	ENSG00000259887.1	ENST00000562996.1	RP11-923I11.5	RP11-923I11.5-001	LOC728503	NA	chr12:52238457-52246513	inter
CUST_30859_PI429285431	7.07161	P	7.3031826	P	0.851705989218184	0	lncRNA	32647-1_{1..270}	n336856|AY566846|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331938_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331938_06|-1.2863300|-0.4019475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336856|AY566846|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331938_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331938_06|-1.2863300|-0.4019475	chr6	   927953	   928222	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3303_PI429285431	0.8901219	A	0.88708925	A	1.00210428370104	0	lncRNA	3281-1_{1..292}	"transcript_id ""ENST00000520224.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520224.1"" | genecode_v17"	chr8	127779121	127779412	-	ENSG00000253573.1	ENST00000520224.1	RP11-351C8.1	RP11-351C8.1-001	NA	NA	NA	inter
CUST_23834_PI429285431	3.845392	P	4.127752	P	0.822244865895304	0	lncRNA	25397-1_{1..429}	lnc-KANK4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KANK4-1:1	chr1	 62584553	 62584981	-	lnc-KANK4-1	lnc-KANK4-1:1	ENSG00000225771.1	RP4-537K17.2	INADL	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90chr1:62574553-62594681"	NA	inner
CUST_47662_PI429285431	0.90749294	A	0.9052213	A	1.00157582116459	0	lncRNA	51644-2_{3001..3285}	"gi|226342929|ref|NR_027456.1| Homo sapiens uncharacterized LOC100272228 (LOC100272228), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|226342929|ref|NR_027456.1| Homo sapiens uncharacterized LOC100272228 (LOC100272228), non-coding RNA"	NW_004070890.2	  5465946	  5466230	+	100272228	NR_027456.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011924	0.9203375	A	0.90896857	A	1.00791147339093	0	lncRNA	TCONS_l2_00014613	NA	NA	NA	NA	XLOC_l2_008047	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008047), lincRNA [TCONS_l2_00014613]"	chr2:64559964-64559905	hs|2p14	Agilent_HUMAN_G3V2	TCONS_l2_00014613	TCONS_l2_00014613	chr2	 64559905	 64559964	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39654_PI429285431	4.42642	P	4.8313107	P	0.755293512395727	0	lncRNA	40593-1_{1..985}	n405255|NR_001275|lncRNA|Homosapiens||RefGeneNoncode|NR_001275||4.1257600|-0.0606859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405255|NR_001275|lncRNA|Homosapiens||RefGeneNoncode|NR_001275||4.1257600|-0.0606859	chr9	135957925	135958909	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39309_PI429285431	0.91912127	A	0.9172567	A	1.00129325697496	0	lncRNA	40276-1_{1..524}	n386320|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010guf.1||1.5700600|-0.1871818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386320|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010guf.1||1.5700600|-0.1871818	chr22	 24342268	 24342791	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26081_PI429285431	3.6997406	A	4.135441	P	0.739334735044931	0	lncRNA	27594-1_{1..585}	lnc-TFEC-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TFEC-2:5	chr7	115879069	115879653	-	lnc-TFEC-2	lnc-TFEC-2:5	ENSG00000243243.1	AC073130.3	TES	NA	chr7:115869069-115889305	inner
CUST_30207_PI429285431	6.490556	P	6.6216583	P	0.913133498372703	0	lncRNA	31982-1_{1..280}	n335024|AJ534888|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248531|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248531|0.0760054|-0.1505331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335024|AJ534888|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248531|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248531|0.0760054|-0.1505331	chr17	 35641761	 35642040	-	NA	NA	NA	NA	ACACA	NA	chr17:35631761-35666375	inner
CUST_36675_PI429285431	2.8239965	A	2.5328665	A	1.22359829354637	0	lncRNA	37861-1_{1..3000}	n345167|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_716|NULL|-1.6047000|-0.1740192	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345167|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_716|NULL|-1.6047000|-0.1740192	chr12	  7262893	  7265892	+	NA	NA	NA	NA	C1RL	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40chr12:7252893-7261869"	NA	inter
CUST_34877_PI429285431	8.6076	P	8.432968	P	1.12867646736512	0	lncRNA	36302-2_{3001..4594}	n341790|AB040935|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4267|NULL|9.7232500|-0.1119601	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341790|AB040935|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4267|NULL|9.7232500|-0.1119601	chr9	131177044	131178637	+	NA	NA	NA	NA	ODF2	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60chr9:131206867-131208079"	NA	inner
CUST_25033_PI429285431	0.91495955	A	0.9013874	A	1.00945188710044	0	lncRNA	26572-1_{1..502}	lnc-DHRS7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHRS7-2:1	chr14	 60558421	 60558922	-	lnc-DHRS7-2	lnc-DHRS7-2:1	ENSG00000258553.1	RP11-16B13.1	C14orf135	NA	chr14:60558629-60568501	inter
CUST_46908_PI429285431	0.91881394	A	1.3246665	A	0.754790118072661	0	lncRNA	51027-2_{3001..3442}	"gi|223890255|ref|NR_026903.1| Homo sapiens archaelysin family metallopeptidase 2 pseudogene 1 (AMZ2P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223890255|ref|NR_026903.1| Homo sapiens archaelysin family metallopeptidase 2 pseudogene 1 (AMZ2P1), non-coding RNA"	Chr17	 62965668	 62966109	-	201283	NR_026903.1	NA	NA	NA	NA	NA	inter
CUST_31195_PI429285431	5.3018584	P	3.450752	P	3.6077675796793	0	lncRNA	32989-1_{1..2328}	n337637|AK123142|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|16|NULL|-1.1146800|-0.3442032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337637|AK123142|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|16|NULL|-1.1146800|-0.3442032	chrX	 16860312	 16862639	+	NA	NA	NA	NA	RBBP7	NA	chrX:16862773-16872640	inner
CUST_47412_PI429285431	5.246515	P	4.7447596	P	1.41593535480167	0	lncRNA	51455-1_{1..2274}	"gi|224591417|ref|NR_027292.1| Homo sapiens signal sequence receptor, delta pseudogene 1 (SSR4P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224591417|ref|NR_027292.1| Homo sapiens signal sequence receptor, delta pseudogene 1 (SSR4P1), non-coding RNA"	Chr21	 46490870	 46493143	-	728039	NR_027292.1	NA	NA	NA	NA	NA	inter
CUST_10810_PI429285431	0.91282856	A	0.9106941	A	1.00148058992359	0	lncRNA	12345-1_{1..1481}	lnc-ABT1-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABT1-3:6	chr6	 26687347	 26688827	+	lnc-ABT1-3	lnc-ABT1-3:6	XLOC_005214	linc-HIST1H2AG-4	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.60"	NA	inter
CUST_45784_PI429285431	1.0447232	A	0.9056927	A	1.10116487756646	0	lncRNA	50126-2_{3001..3074}	"gi|385862218|ref|NR_047674.1| Homo sapiens leucine rich repeat containing 4C (LRRC4C), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385862218|ref|NR_047674.1| Homo sapiens leucine rich repeat containing 4C (LRRC4C), transcript variant 4, non-coding RNA"	Chr11	 40138749	 40138822	-	57689	NR_047674.1	NA	NA	NA	NA	NA	inter
CUST_6690_PI429285431	10.55205	P	10.3642025	P	1.13906296626997	0	lncRNA	6639-1_{1..136}	"transcript_id ""ENST00000439232.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439232.1"" | genecode_v17"	chr20	 37053843	 37053978	-	ENSG00000235408.1	ENST00000439232.1	SNORA71B	SNORA71B-001	NA	NA	NA	inter
CUST_42383_PI429285431	0.9573734	A	1.3053579	A	0.785680957806617	0	lncRNA	45068-1_{1..95}	ENST00000516024 ncrna:snoRNA chromosome:GRCh37:20:6841661:6841755:1 gene:ENSG00000251833 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516024 ncrna:snoRNA chromosome:GRCh37:20:6841661:6841755:1 gene:ENSG00000251833 gene_biotype:snoRNA transcript_biotype:snoRNA	chr20	  6841661	  6841755	+	ENSG00000251833	ENST00000516024	NA	NA	NA	NA	NA	inter
CUST_6432_PI429285431	5.270497	P	5.885703	P	0.652836669438222	0	lncRNA	6372-1_{1..573}	"transcript_id ""ENST00000592653.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592653.1"" | genecode_v17"	chr19	 29493463	 29494035	+	ENSG00000267014.1	ENST00000592653.1	CTD-2081K17.2	CTD-2081K17.2-002	NA	NA	NA	inter
CUST_22805_PI429285431	5.071373	P	5.432358	P	0.778632786626388	0	lncRNA	24385-1_{1..414}	lnc-CALCOCO2-8:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALCOCO2-8:3	chr17	 46628291	 46628704	+	lnc-CALCOCO2-8	lnc-CALCOCO2-8:3	ENSG00000230148.4	HOXB-AS1	HOXB3	"hg19_refFlat_HOXD3:range=chr2:177033843-1770370025'pad=0,hg19_refFlat_HOXD3:range=chr2:177033843-1770370025'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_HOXB3:range=chr17:46627696-466298365'pad=0,hg19_refFlat_HOXB3:range=chr17:46627696-466298365'pad=0 3'pad=0 strand=- repeatMasking=none,-101.40;hg19_refFlat_HOXA3:range=chr7:27147534-271502595'pad=0,hg19_refFlat_HOXA3:range=chr7:27147534-271502595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50chr17:46626232-46638438"	NA	inner
CUST_46432_PI429285431	0.89166796	A	1.5252767	A	0.644562097275355	0	lncRNA	50642-2_{3001..5762}	"gi|333470724|ref|NR_038253.1| Homo sapiens OTU domain containing 7A pseudogene (LOC100288637), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|333470724|ref|NR_038253.1| Homo sapiens OTU domain containing 7A pseudogene (LOC100288637), transcript variant 1, non-coding RNA"	Chr15	 30941318	 30944079	+	100288637	NR_038253.1	NA	NA	NA	"hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60"	NA	inter
CUST_18479_PI429285431	7.7879524	P	7.257997	P	1.44388455805936	0	lncRNA	20199-1_{1..834}	lnc-CYP11B2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CYP11B2-1:4	chr8	144099577	144100410	-	lnc-CYP11B2-1	lnc-CYP11B2-1:4	ENSG00000247317	RP11-273G15.2	LY6E	NA	chr8:144089577-144103827	inter
CUST_49110_PI429285431	0.90140957	A	0.9125884	A	0.992281368318947	0	lncRNA	52934-1_{1..368}	hg19_lincRNAsTranscripts_TCONS_l2_00021133 range=chr4:49310505-49328402 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021133 range=chr4:49310505-49328402 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 49310505	 49310872	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40874_PI429285431	8.78875	P	8.521839	P	1.20322879640626	0	lncRNA	41569-1_{1..3000}	n410676|NR_037926|lncRNA|Homosapiens||RefGeneNoncode|NR_037926||8.6940700|-0.1989238	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410676|NR_037926|lncRNA|Homosapiens||RefGeneNoncode|NR_037926||8.6940700|-0.1989238	chr17	  7465308	  7468307	+	NA	NA	NA	NA	SENP3	NA	chr17:7465309-7475287	inner
CUST_38879_PI429285431	5.374709	P	5.11291	P	1.19897285815818	0	lncRNA	39866-1_{1..2873}	n384791|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003mmk.3||1.3390600|-0.2670567	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,UCSC,"	>n384791|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003mmk.3||1.3390600|-0.2670567	chr5	180256958	180259830	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4273_PI429285431	1.1664362	A	1.9778788	A	0.569811798709842	0	lncRNA	4229-1_{1..548}	"transcript_id ""ENST00000547552.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547552.1"" | genecode_v17"	chr12	 57824899	 57825446	+	ENSG00000258001.1	ENST00000547552.1	RP11-756H6.1	RP11-756H6.1-001	INHBC	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80chr12:57828543-57837718"	NA	inter
CUST_15692_PI429285431	4.3612347	P	4.421016	P	0.95940954643148	0	lncRNA	17379-1_{1..1417}	lnc-AC016251.1-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AC016251.1-8:2	chr15	 95870059	 95871475	-	lnc-AC016251.1-8	lnc-AC016251.1-8:2	XLOC_011592	linc-RGMA-7	NA	NA	NA	inter
CUST_30150_PI429285431	6.931686	P	7.056507	P	0.917117826022545	0	lncRNA	31924-1_{1..520}	n334799|AJ243668|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245544|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245544|1.0388300|-0.1989528	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334799|AJ243668|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245544|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245544|1.0388300|-0.1989528	chr1	154193444	154193963	+	NA	NA	NA	NA	UBAP2L	NA	chr1:154192655-154217199	inner
CUST_51381_PI429285431	1.1789707	A	1.008558	A	1.12538036702757	0	lncRNA	54974-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00009371 range=chr15:101087837-101099853 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009371 range=chr15:101087837-101099853 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	101090837	101093836	-	NA	NA	NA	NA	CERS3	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60chr15:101077837-101084925"	NA	inter
CUST_50550_PI429285431	1.581253	A	1.2558261	A	1.25303516255456	0	lncRNA	54242-1_{1..610}	hg19_lincRNAsTranscripts_TCONS_l2_00030945 range=chrY:22539965-22631867 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030945 range=chrY:22539965-22631867 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrY	 22539965	 22540574	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10448_PI429285431	2.5963793	A	2.7150655	A	0.92102600740444	0	lncRNA	11974-1_{1..2071}	lnc-BMP6-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BMP6-9:2	chr6	  8938582	  8940652	+	lnc-BMP6-9	lnc-BMP6-9:2	XLOC_005164	linc-GCNT2-4	NA	NA	NA	inter
CUST_27009_PI429285431	0.90508837	A	0.9055318	A	0.999692684976663	0	lncRNA	28537-1_{1..793}	n324112|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052508|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052508|-1.2865300|-0.2920093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324112|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052508|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052508|-1.2865300|-0.2920093	chr9	 38838557	 38839349	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44009_PI429285431	3.6613958	P	1.3964103	A	4.80649588953306	0	lncRNA	48700-1_{1..3000}	"gi|371119043|ref|NR_045774.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 13, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371119043|ref|NR_045774.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 13, non-coding RNA"	Chr2	175936978	175939977	-	1386	NR_045774.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008356	0.92396057	A	0.9235702	A	1.00027062047599	0	lncRNA	TCONS_00022557	NA	NA	NA	NA	XLOC_010878	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010878), lincRNA [TCONS_00022557]"	chr14:76705431-76705490	hs|14q24.3	Agilent_HUMAN_G3V2	TCONS_00022557	TCONS_00022557	chr14	 76705431	 76705490	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14794_PI429285431	0.929252	A	0.9575477	A	0.980578000572105	0	lncRNA	16455-1_{1..338}	lnc-DUSP6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DUSP6-1:2	chr12	 89562891	 89563228	-	lnc-DUSP6-1	lnc-DUSP6-1:2	XLOC_010148	linc-KITLG-3	NA	NA	NA	inter
CUST_40017_PI429285431	2.184731	A	2.3511727	A	0.891037651273492	0	lncRNA	40877-2_{3001..4231}	n407167|NR_026586|lncRNA|Homosapiens||RefGeneNoncode|NR_026586||1.1774000|-0.2278617	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407167|NR_026586|lncRNA|Homosapiens||RefGeneNoncode|NR_026586||1.1774000|-0.2278617	chr1	245136283	245137513	+	NA	NA	NA	NA	EFCAB2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.70chr1:245133171-245288530"	NA	inter
CUST_37273_PI429285431	1.9954618	A	2.6726317	A	0.625390886120549	0	lncRNA	38382-1_{1..918}	n345714|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1263|NULL|-1.3194300|-0.1080079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345714|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1263|NULL|-1.3194300|-0.1080079	chr11	 67382250	 67383167	-	NA	NA	NA	NA	NDUFV1	NA	chr11:67374323-67380012	inter
CUST_35187_PI429285431	4.2586513	P	4.553074	P	0.815398552013263	0	lncRNA	36588-1_{1..1766}	n342166|AK124825|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4653|NULL|-0.9924410|-0.3313179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342166|AK124825|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4653|NULL|-0.9924410|-0.3313179	chr6	163610449	163612214	-	NA	NA	NA	NA	PACRG	NA	chr6:163600449-163622834	inner
CUST_11723_PI429285431	0.92189	A	0.9107326	A	1.00776370280977	0	lncRNA	13301-1_{1..1636}	lnc-GPD2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPD2-3:1	chr2	156843126	156844761	+	lnc-GPD2-3	lnc-GPD2-3:1	XLOC_001716	linc-GPD2-2	NA	NA	NA	inter
CUST_37551_PI429285431	6.701308	P	7.025965	P	0.798488203948855	0	lncRNA	38655-1_{1..1129}	n346027|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1577|NULL|-1.3038300|-0.2506712	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346027|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1577|NULL|-1.3038300|-0.2506712	chr17	 70319297	 70320425	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12047_PI429285431	2.939232	A	3.794046	P	0.552936609625014	0	lncRNA	13632-1_{1..1098}	lnc-RPLP1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RPLP1-1:4	chr15	 69857533	 69858630	+	lnc-RPLP1-1	lnc-RPLP1-1:4	XLOC_011294	linc-LRRC49-4	NA	NA	NA	inter
CUST_37343_PI429285431	1.0964013	A	1.2093593	A	0.924690197470794	0	lncRNA	38447-2_{3001..5019}	n345786|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1335|NULL|-1.6169500|-0.3624170	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345786|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1335|NULL|-1.6169500|-0.3624170	chr10	 54209912	 54211930	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10"	NA	inter
CUST_24160_PI429285431	0.8992555	A	1.4155426	A	0.699168891127975	0	lncRNA	25711-1_{1..2525}	lnc-CHAD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CHAD-1:1	chr17	 48553508	 48556032	-	lnc-CHAD-1	lnc-CHAD-1:1	ENSG00000248380.1	RP11-94C24.3	RSAD1	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80chr17:48556190-48563336"	NA	inter
CUST_6050_PI429285431	0.9107942	A	0.914581	A	0.997378632057734	0	lncRNA	5976-1_{1..404}	"transcript_id ""ENST00000558690.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558690.1"" | genecode_v17"	chr18	  3347774	  3348177	-	ENSG00000259256.1	ENST00000558690.1	RP11-838N2.3	RP11-838N2.3-001	NA	NA	NA	inter
LNCA_21_P0006472	4.3188763	P	5.1099753	P	0.577903695257334	0	lncRNA	ENST00000433825	NA	NA	NA	NA	XLOC_008263	NA	ENST00000433825	THC2667401	NA	"BROAD Institute lincRNA (XLOC_008263), lincRNA [TCONS_00017107]"	chrX:153562406-153562347	hs|Xq28	Agilent_HUMAN_G3V2	ENST00000433825	ENST00000433825	chrX	153562347	153562406	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003752	0.91916	A	0.91164565	A	1.00522213859664	0	lncRNA	TCONS_00008532	NA	NA	NA	NA	XLOC_004022	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004022), lincRNA [TCONS_00008532]"	chr4:99627588-99627529	hs|4q23	Agilent_HUMAN_G3V2	TCONS_00008532	TCONS_00008532	chr4	 99627529	 99627588	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14975_PI429285431	6.507598	P	6.369126	P	1.10073867414736	0	lncRNA	16638-1_{1..604}	lnc-AP000679.2.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP000679.2.1-1:3	chr11	119898128	119898731	+	lnc-AP000679.2.1-1	lnc-AP000679.2.1-1:3	XLOC_009304	linc-OAF-1	NA	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_18888_PI429285431	4.600734	P	4.58982	P	1.00759369529756	0	lncRNA	20581-1_{1..693}	lnc-HOXA9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HOXA9-1:2	chr7	 27210050	 27210742	-	lnc-HOXA9-1	lnc-HOXA9-1:2	ENSG00000257667	RP1-170O19.21	HOXA10	NA	chr7:27210210-27219880	inter
CUST_16850_PI429285431	1.6800451	A	1.8896655	A	0.864764737123309	0	lncRNA	18558-1_{1..704}	lnc-PELI1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PELI1-3:1	chr2	 64503965	 64504668	-	lnc-PELI1-3	lnc-PELI1-3:1	XLOC_002124	linc-PELI1-5	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.51;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
CUST_46730_PI429285431	3.1053789	P	3.4059124	P	0.811952085806604	0	lncRNA	50882-1_{1..1746}	"gi|300796063|ref|NR_034082.1| Homo sapiens uncharacterized LOC100130950 (LOC100130950), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300796063|ref|NR_034082.1| Homo sapiens uncharacterized LOC100130950 (LOC100130950), non-coding RNA"	Chr17	  5095379	  5097124	+	100130950	NR_034082.1	NA	NA	NA	"hg19_refFlat_SCIMP:range=chr17:5114096-51380505'pad=0,hg19_refFlat_SCIMP:range=chr17:5114096-51380505'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10"	NA	inter
CUST_11042_PI429285431	1.1876233	A	1.206673	A	0.986882547773918	0	lncRNA	12588-1_{1..291}	lnc-ZC3H12D-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZC3H12D-5:1	chr6	148478043	148478333	-	lnc-ZC3H12D-5	lnc-ZC3H12D-5:1	XLOC_005871	linc-SHPRH-4	NA	NA	NA	inter
CUST_13967_PI429285431	6.3729258	P	6.5567403	P	0.880372203489316	0	lncRNA	15613-1_{1..861}	lnc-SLC44A5-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC44A5-4:1	chr1	 76189627	 76190487	-	lnc-SLC44A5-4	lnc-SLC44A5-4:1	XLOC_000872	linc-SLC44A5	ACADM	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00chr1:76179627-76199696"	NA	inter
CUST_37400_PI429285431	0.9267224	A	0.9294827	A	0.998088535018004	0	lncRNA	38507-1_{1..804}	n345855|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1404|NULL|-1.2550900|-0.2669257	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345855|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1404|NULL|-1.2550900|-0.2669257	chr12	  9723356	  9724159	+	NA	NA	NA	NA	OVOS	NA	chr12:9713356-9725776	inter
CUST_33977_PI429285431	3.5437675	P	4.0101457	P	0.723779323824895	0	lncRNA	35514-1_{1..2343}	n340788|AK093624|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3251|NULL|-0.9104410|-0.1577939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340788|AK093624|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3251|NULL|-0.9104410|-0.1577939	chr5	180649868	180652210	-	NA	NA	NA	NA	GNB2L1	"hg19_refFlat_TRIM41:range=chr5:180651000-1806617755'pad=0,hg19_refFlat_TRIM41:range=chr5:180651000-1806617755'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.00;hg19_refFlat_TRIM41:range=chr5:180651000-1806623795'pad=0,hg19_refFlat_TRIM41:range=chr5:180651000-1806623795'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.00chr5:180663928-180667685"	NA	inter
CUST_46989_PI429285431	1.0245091	A	0.9054223	A	1.08604719657661	0	lncRNA	51088-1_{1..538}	"gi|310123750|ref|XR_109474.1| PREDICTED: Homo sapiens uncharacterized LOC100506821 (LOC100506821), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123750|ref|XR_109474.1| PREDICTED: Homo sapiens uncharacterized LOC100506821 (LOC100506821), misc_RNA"	NA	NA	NA	NA	NA	XR_109474.1	NA	NA	NA	NA	NA	Unknown
CUST_49760_PI429285431	0.89917	A	0.9085239	A	0.993537343960599	0	lncRNA	53525-5_{12001..12633}	hg19_lincRNAsTranscripts_TCONS_l2_00025849 range=chr7:45831388-45863181 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025849 range=chr7:45831388-45863181 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 45843388	 45844020	+	NA	NA	NA	NA	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-60.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_14225_PI429285431	3.9160314	P	3.7400327	P	1.12974619656516	0	lncRNA	15882-1_{1..826}	lnc-RP11-701P16.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-701P16.2.1-2:1	chr4	185818526	185819351	+	lnc-RP11-701P16.2.1-2	lnc-RP11-701P16.2.1-2:1	XLOC_003810	linc-HELT-3	NA	NA	NA	inter
CUST_41019_PI429285431	0.8968449	A	1.1956284	A	0.812937587419519	0	lncRNA	41679-1_{1..883}	n411625|NR_040090_5|lncRNA|Homosapiens||RefGeneNoncode|NR_040090_5||-0.8889910|-0.2004040	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411625|NR_040090_5|lncRNA|Homosapiens||RefGeneNoncode|NR_040090_5||-0.8889910|-0.2004040	chr6	  3355550	  3356432	+	NA	NA	NA	NA	SLC22A23	NA	chr6:3345550-3366530	inner
LNCA_19_P00812944	7.6875668	P	8.0578785	P	0.773615336044589	0	lncRNA	TCONS_l2_00001904	NA	NA	NA	NA	XLOC_l2_001408	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001408), lincRNA [TCONS_l2_00001904]"	chr1:246935861-246935802	hs|1q44	Agilent_HUMAN_G3V2	TCONS_l2_00001904	TCONS_l2_00001904	chr1	246935802	246935861	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41936_PI429285431	5.101292	P	5.455904	P	0.782079948293793	0	lncRNA	43689-1_{1..78}	ENST00000583957 ncrna:miRNA chromosome:GRCh37:9:137741837:137741914:-1 gene:ENSG00000263507 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583957 ncrna:miRNA chromosome:GRCh37:9:137741837:137741914:-1 gene:ENSG00000263507 gene_biotype:miRNA transcript_biotype:miRNA	chr9	137741837	137741914	-	ENSG00000263507	ENST00000583957	NA	NA	COL5A1	NA	chr9:137731837-137736689	inter
CUST_34319_PI429285431	0.8980682	A	0.8932171	A	1.00336818592091	0	lncRNA	35813-1_{1..2292}	n341181|AK094662|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3647|NULL|-1.2065100|-0.3610235	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n341181|AK094662|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3647|NULL|-1.2065100|-0.3610235	chr7	  7316874	  7319165	+	NA	NA	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90"	NA	inter
CUST_6505_PI429285431	1.9029874	A	2.3765805	A	0.720168748153431	0	lncRNA	6447-1_{1..1058}	"transcript_id ""ENST00000590433.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000590433.1"" | genecode_v17"	chr19	 38308051	 38309108	+	ENSG00000267640.1	ENST00000590433.1	CTD-2554C21.2	CTD-2554C21.2-001	NA	NA	NA	inter
CUST_23087_PI429285431	3.1311226	P	3.552004	P	0.746968132232405	0	lncRNA	24659-1_{1..520}	lnc-DALRD3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DALRD3-2:1	chr3	 49021328	 49021847	-	lnc-DALRD3-2	lnc-DALRD3-2:1	ENSG00000235236.1	RP13-131K19.1	ARIH2	NA	chr3:49011328-49022974	inner
CUST_48078_PI429285431	3.4292078	P	3.5736263	P	0.904743974785495	0	lncRNA	51954-1_{1..382}	"gi|310114631|ref|XR_112646.1| PREDICTED: Homo sapiens uncharacterized LOC100506253 (LOC100506253), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310114631|ref|XR_112646.1| PREDICTED: Homo sapiens uncharacterized LOC100506253 (LOC100506253), misc_RNA"	NA	NA	NA	NA	NA	XR_112646.1	NA	NA	NA	NA	NA	Unknown
CUST_26885_PI429285431	4.2555227	P	4.386088	P	0.913473448220452	0	lncRNA	28402-1_{1..800}	n323960|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054574|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054574|0.1169230|-0.2017494	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323960|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054574|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054574|0.1169230|-0.2017494	chr9	131240315	131241114	+	NA	NA	NA	NA	ODF2	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50chr9:131230315-131251218"	NA	inner
LNCA_21_P0014670	3.7490973	P	4.7512617	P	0.499250438525748	0	lncRNA	XR_111107	XR_111107	XR_111107	NA	NA	LOC100505606	uncharacterized LOC100505606	NA	THC2656106	NA	"PREDICTED: Homo sapiens hypothetical LOC100505606, transcript variant 2 (LOC100505606), miscRNA [XR_111107]"	chr10:100213477-100213536	hs|10q24.2	Agilent_HUMAN_G3V2	XR_111107	XR_111107	chr10	100213477	100213536	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51665_PI429285431	2.072249	A	0.8950258	A	2.26141097109734	0	lncRNA	55233-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00010936 range=chr17:66098133-66132705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010936 range=chr17:66098133-66132705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 66101133	 66104132	+	NA	NA	NA	NA	NA	"hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0,hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0,hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0,hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0,hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0,hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SH3GL1:range=chr19:4361597-44003655'pad=0,hg19_refFlat_SH3GL1:range=chr19:4361597-44003655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0,hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50"	NA	inter
CUST_25679_PI429285431	0.90930724	A	0.8986397	A	1.00742157969122	0	lncRNA	27208-1_{1..502}	lnc-RP11-276H1.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-276H1.3.1-1:1	chr16	 12188928	 12189429	-	lnc-RP11-276H1.3.1-1	lnc-RP11-276H1.3.1-1:1	ENSG00000261293.1	RP11-276H1.2	SNX29	NA	chr16:12178928-12199164	inner
CUST_3543_PI429285431	2.5026526	A	2.4039438	A	1.07081466337046	0	lncRNA	3513-1_{1..507}	"transcript_id ""ENST00000600965.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600965.1"" | genecode_v17"	chr9	131932713	131933219	+	ENSG00000268707.1	ENST00000600965.1	RP11-247A12.7	RP11-247A12.7-001	IER5L	NA	chr9:131937831-131940540	inter
CUST_19874_PI429285431	0.90043044	A	0.9028938	A	0.998293985860647	0	lncRNA	21530-1_{1..602}	lnc-AC117834.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC117834.1-1:1	chr8	 93977539	 93978140	+	lnc-AC117834.1-1	lnc-AC117834.1-1:1	ENSG00000253197.1	CTD-3239E11.2	C8orf83	NA	chr8:93967539-93978372	inner
CUST_49854_PI429285431	1.0883629	A	0.90954435	A	1.13195652522398	0	lncRNA	53606-1_{1..1469}	hg19_lincRNAsTranscripts_TCONS_l2_00026664 range=chr7:66281175-66297999 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026664 range=chr7:66281175-66297999 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 66281175	 66282643	-	NA	NA	NA	NA	RABGEF1	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.50;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.69;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr7:66271175-66276451"	NA	inter
CUST_43419_PI429285431	9.658523	P	9.755956	P	0.934694623200546	0	lncRNA	48231-1_{1..1380}	"gi|403225039|ref|NR_073097.1| Homo sapiens trafficking protein particle complex 3 (TRAPPC3), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|403225039|ref|NR_073097.1| Homo sapiens trafficking protein particle complex 3 (TRAPPC3), transcript variant 7, non-coding RNA"	Chr1	 36602170	 36603549	-	27095	NR_073097.1	NA	NA	NA	NA	NA	inter
CUST_17470_PI429285431	0.9149621	A	0.9040278	A	1.00760787313511	0	lncRNA	19196-1_{1..463}	lnc-CCKAR-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCKAR-5:1	chr4	 28395818	 28396280	-	lnc-CCKAR-5	lnc-CCKAR-5:1	XLOC_003917	linc-CCKAR-8	NA	NA	NA	inter
CUST_27006_PI429285431	0.9226865	A	0.92262465	A	1.0000428720721	0	lncRNA	28534-1_{1..847}	n324108|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000143686|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000143686|-0.1088690|-0.3101244	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324108|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000143686|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000143686|-0.1088690|-0.3101244	chr9	 40730775	 40731621	-	NA	NA	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-15.80"	NA	inter
CUST_23906_PI429285431	2.2541945	A	1.261978	A	1.98923883278875	0	lncRNA	25464-1_{1..510}	lnc-LEO1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LEO1-4:1	chr15	 52193216	 52193725	-	lnc-LEO1-4	lnc-LEO1-4:1	ENSG00000259201.1	RP11-56B16.5	TMOD3	"hg19_refFlat_TMOD3:range=chr15:52155082-522010075'pad=0,hg19_refFlat_TMOD3:range=chr15:52155082-522010075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40chr15:52183216-52203320"	NA	inner
CUST_4406_PI429285431	5.998868	P	6.4065294	P	0.753844361015095	0	lncRNA	4356-1_{1..705}	"transcript_id ""ENST00000548368.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548368.1"" | genecode_v17"	chr12	111374393	111375097	+	ENSG00000185847.3	ENST00000548368.1	RP1-46F2.2	RP1-46F2.2-002	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30"	NA	inter
CUST_6057_PI429285431	0.89494926	A	0.9021884	A	0.994994778594851	0	lncRNA	5983-1_{1..507}	"transcript_id ""ENST00000579141.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579141.1"" | genecode_v17"	chr18	  5084991	  5085497	+	ENSG00000265514.1	ENST00000579141.1	RP11-92G19.2	RP11-92G19.2-002	NA	NA	NA	inter
CUST_44716_PI429285431	9.091472	P	8.848882	P	1.18311474418524	0	lncRNA	49271-1_{1..1953}	"gi|323276704|ref|NR_037852.1| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B (DDX39B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|323276704|ref|NR_037852.1| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B (DDX39B), transcript variant 3, non-coding RNA"	NT_167249.1	  2828801	  2830753	-	7919	NR_037852.1	NA	NA	NA	NA	NA	Unknown
CUST_460_PI429285431	6.6488247	P	6.8508654	P	0.869320035278117	0	lncRNA	452-1_{1..3000}	"transcript_id ""ENST00000441272.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441272.1"" | genecode_v17"	chr1	156657489	156660488	-	ENSG00000237588.1	ENST00000441272.1	RP11-66D17.3	RP11-66D17.3-001	CRABP2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-60.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.54;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20chr1:156669398-156671789"	NA	inter
CUST_32990_PI429285431	0.90262055	A	1.0087188	A	0.929097398974279	0	lncRNA	34605-1_{1..2860}	n339670|AK055854|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2114|NULL|3.1731400|-0.1837371	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339670|AK055854|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2114|NULL|3.1731400|-0.1837371	chr20	 36888576	 36891435	+	NA	NA	NA	NA	KIAA1755	NA	chr20:36878576-36889174	inner
CUST_2011_PI429285431	0.91686684	A	0.9039507	A	1.00899298207953	0	lncRNA	2002-1_{1..743}	"transcript_id ""ENST00000503637.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503637.1"" | genecode_v17"	chr4	188123187	188123929	+	ENSG00000249747.1	ENST00000503637.1	RP11-308K2.1	RP11-308K2.1-002	NA	NA	NA	inter
CUST_22071_PI429285431	7.9441514	P	8.09015	P	0.903753603758628	0	lncRNA	23677-1_{1..707}	lnc-LCE5A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LCE5A-1:1	chr1	152417320	152418026	+	lnc-LCE5A-1	lnc-LCE5A-1:1	ENSG00000227415.1	RP1-91G5.3	NA	NA	NA	inter
CUST_4106_PI429285431	3.9306512	P	4.0114207	P	0.945553176115933	0	lncRNA	4067-1_{1..645}	"transcript_id ""ENST00000526796.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526796.2"" | genecode_v17"	chr11	125128522	125129166	-	ENSG00000254932.2	ENST00000526796.2	RP11-687M24.8	RP11-687M24.8-001	PKNOX2	NA	chr11:125118522-125146694	inner
CUST_46253_PI429285431	1.1078867	A	0.91378844	A	1.14400888744218	0	lncRNA	50492-1_{1..503}	"gi|388490248|ref|NR_049776.1| Homo sapiens GPC5 antisense RNA 1 (GPC5-AS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388490248|ref|NR_049776.1| Homo sapiens GPC5 antisense RNA 1 (GPC5-AS1), transcript variant 3, non-coding RNA"	Chr13	 93353642	 93354144	-	100873969	NR_049776.1	NA	NA	NA	NA	NA	inter
CUST_37053_PI429285431	0.90767205	A	0.9022088	A	1.0037940154581	0	lncRNA	38187-1_{1..304}	n345504|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1053|NULL|-1.6139500|-0.3633404	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345504|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1053|NULL|-1.6139500|-0.3633404	chr2	174730620	174730923	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30871_PI429285431	1.4625193	A	1.2791587	A	1.13552589009519	0	lncRNA	32659-1_{1..231}	n336879|AY690666|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332173|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332173|0.4026770|-0.3462870	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336879|AY690666|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332173|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332173|0.4026770|-0.3462870	chr12	 14982236	 14982466	-	NA	NA	NA	NA	C12orf60	NA	chr12:14972236-14976792	inner
CUST_3559_PI429285431	1.0650034	A	0.89138407	A	1.12788449420712	0	lncRNA	3529-1_{1..829}	"transcript_id ""ENST00000444708.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444708.1"" | genecode_v17"	chr9	134691579	134692407	+	ENSG00000236687.1	ENST00000444708.1	RP11-323H21.3	RP11-323H21.3-001	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00"	NA	inter
CUST_44582_PI429285431	2.05612	A	1.4335054	A	1.53966298961618	0	lncRNA	49163-1_{1..1876}	"gi|302699227|ref|NR_036530.1| Homo sapiens uncharacterized LOC100289230 (LOC100289230), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302699227|ref|NR_036530.1| Homo sapiens uncharacterized LOC100289230 (LOC100289230), non-coding RNA"	Chr5	 98264838	 98266713	+	100289230	NR_036530.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70"	NA	inter
CUST_5722_PI429285431	1.5859797	A	1.3573052	A	1.1717578825297	0	lncRNA	5646-1_{1..667}	"transcript_id ""ENST00000579529.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579529.2"" | genecode_v17"	chr17	 10644584	 10645250	-	ENSG00000264016.2	ENST00000579529.2	CTC-297N7.9	CTC-297N7.9-001	NA	NA	NA	inter
CUST_31259_PI429285431	4.0624275	P	2.2905757	A	3.41492004389265	0	lncRNA	33050-1_{1..3000}	n337715|D87440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|97|NULL|10.2096000|-0.2695000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337715|D87440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|97|NULL|10.2096000|-0.2695000	chr15	 41709335	 41712334	+	NA	NA	NA	NA	RTF1	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30chr15:41709302-41775761"	NA	inner
CUST_23683_PI429285431	3.528884	P	3.7249804	P	0.872909261922183	0	lncRNA	25248-1_{1..719}	lnc-SHANK2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHANK2-5:2	chr11	 70053174	 70053892	-	lnc-SHANK2-5	lnc-SHANK2-5:2	ENSG00000254721.1	RP11-805J14.5	FADD	NA	chr11:70049269-70053508	inner
CUST_2053_PI429285431	1.2973135	A	1.138659	A	1.1162456088481	0	lncRNA	2045-1_{1..471}	"transcript_id ""ENST00000505404.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505404.1"" | genecode_v17"	chr5	  4866634	  4867104	+	ENSG00000249941.1	ENST00000505404.1	CTD-2046I8.1	CTD-2046I8.1-001	NA	NA	NA	inter
CUST_39466_PI429285431	7.368375	P	6.8943043	P	1.38902320388173	0	lncRNA	40410-1_{1..3000}	n387026|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wks.1||2.7779100|-0.2359340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387026|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wks.1||2.7779100|-0.2359340	chr17	 45500842	 45503841	+	NA	NA	NA	NA	C17orf57	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr17:45490842-45514056"	NA	inner
CUST_9183_PI429285431	7.5852003	P	7.014623	P	1.48511772734612	0	lncRNA	10698-1_{1..648}	lnc-VAPB-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VAPB-1:7	chr20	 57148632	 57149279	+	lnc-VAPB-1	lnc-VAPB-1:7	ENSG00000231290	RP5-907D15.2	NA	NA	NA	inter
CUST_16454_PI429285431	1.0553229	A	0.9178592	A	1.09996963632709	0	lncRNA	18152-1_{1..666}	lnc-TMEM50B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM50B-1:2	chr21	 34856044	 34856709	-	lnc-TMEM50B-1	lnc-TMEM50B-1:2	XLOC_014060	linc-TMEM50B	TMEM50B	NA	chr21:34846044-34852316	inter
CUST_33428_PI429285431	1.1409224	A	1.4490523	A	0.807688050249823	0	lncRNA	35006-1_{1..1204}	n340157|BC017894|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2617|NULL|-1.3524300|-0.3614782	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340157|BC017894|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2617|NULL|-1.3524300|-0.3614782	chr10	120451872	120453075	-	NA	NA	NA	NA	C10orf46	NA	chr10:120441872-120463047	inner
LNCA_21_P0003116	6.8922095	P	7.252861	P	0.778812799756683	0	lncRNA	TCONS_00006506	NA	NA	NA	NA	XLOC_003114	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003114), lincRNA [TCONS_00006506]"	chr3:48247763-48247704	hs|3p21.31	Agilent_HUMAN_G3V2	TCONS_00006506	TCONS_00006506	chr3	 48247704	 48247763	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32101_PI429285431	5.9272847	P	6.0184283	P	0.938778300488853	0	lncRNA	33805-1_{1..1971}	n338664|CR621233|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1078|NULL|-0.9400310|-0.2113247	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n338664|CR621233|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1078|NULL|-0.9400310|-0.2113247	chr2	 10588860	 10590830	+	NA	NA	NA	NA	ODC1	NA	chr2:10580508-10588453	inter
CUST_40083_PI429285431	3.7149062	P	3.3506246	P	1.28724047956736	0	lncRNA	40930-1_{1..1289}	n407411|NR_026866|lncRNA|Homosapiens||RefGeneNoncode|NR_026866||7.8523100|-0.3265816	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407411|NR_026866|lncRNA|Homosapiens||RefGeneNoncode|NR_026866||7.8523100|-0.3265816	chr3	 63805040	 63806328	+	NA	NA	NA	NA	THOC7	NA	chr3:63819546-63844312	inner
CUST_40606_PI429285431	1.7201523	A	3.0147429	A	0.40765183096564	0	lncRNA	41352-1_{1..2186}	n410087|NR_036523_4|lncRNA|Homosapiens||RefGeneNoncode|NR_036523_4||3.9018800|-0.3944115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410087|NR_036523_4|lncRNA|Homosapiens||RefGeneNoncode|NR_036523_4||3.9018800|-0.3944115	chr6	  2880256	  2882441	+	NA	NA	NA	NA	SERPINB9	"hg19_refFlat_SERPINB9:range=chr6:2890397-29008455'pad=0,hg19_refFlat_SERPINB9:range=chr6:2890397-29008455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90chr6:2887504-2903545"	NA	inner
CUST_30334_PI429285431	11.015496	P	10.314206	P	1.62595800930239	0	lncRNA	32110-1_{1..449}	n335250|AY562998|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255509|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255509|-1.1101800|-0.3259261	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335250|AY562998|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255509|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255509|-1.1101800|-0.3259261	chr8	 15601082	 15601530	+	NA	NA	NA	NA	TUSC3	NA	chr8:15591082-15624158	inner
CUST_5694_PI429285431	0.91455853	A	0.91083574	A	1.00258377359678	0	lncRNA	5618-1_{1..416}	"transcript_id ""ENST00000562203.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562203.1"" | genecode_v17"	chr16	 90171503	 90171918	-	ENSG00000260507.1	ENST00000562203.1	RP11-356C4.3	RP11-356C4.3-001	FAM157C	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-28.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20chr16:90161503-90182724"	NA	inter
CUST_21194_PI429285431	2.5054157	A	2.5522041	A	0.968089006041175	0	lncRNA	22819-2_{3001..4565}	lnc-LMAN1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LMAN1L-1:1	chr15	 75125471	 75127035	+	lnc-LMAN1L-1	lnc-LMAN1L-1:1	ENSG00000261606.1	RP11-414J4.2	CPLX3	NA	chr15:75118951-75124136	inner
CUST_25802_PI429285431	3.541059	P	3.963983	P	0.745911306311001	0	lncRNA	27323-1_{1..571}	lnc-MRE11A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRE11A-1:1	chr11	 94473384	 94473954	-	lnc-MRE11A-1	lnc-MRE11A-1:1	ENSG00000255929.1	RP11-867G2.8	NA	NA	NA	inter
CUST_33380_PI429285431	1.2856722	A	1.2776031	A	1.00560874435425	0	lncRNA	34958-2_{3001..4235}	n340097|AK127074|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2554|NULL|-0.9747760|-0.2985742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340097|AK127074|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2554|NULL|-0.9747760|-0.2985742	chr10	 87289636	 87290870	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42899_PI429285431	0.9077135	A	0.90121794	A	1.00451253003768	0	lncRNA	45995-1_{1..72}	ENST00000516140 ncrna:snoRNA chromosome:GRCh37:14:101392317:101392388:1 gene:ENSG00000251949 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516140 ncrna:snoRNA chromosome:GRCh37:14:101392317:101392388:1 gene:ENSG00000251949 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101392317	101392388	+	ENSG00000251949	ENST00000516140	NA	NA	NA	NA	NA	inter
CUST_30886_PI429285431	5.802578	P	5.9555254	P	0.899411103666603	0	lncRNA	32674-1_{1..298}	n336897|AY927456|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332618|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332618|-0.7087780|-0.0645641	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336897|AY927456|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332618|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332618|-0.7087780|-0.0645641	chr7	156798536	156798833	+	NA	NA	NA	NA	MNX1	"hg19_refFlat_MNX1:range=chr7:156798214-1568017465'pad=0,hg19_refFlat_MNX1:range=chr7:156798214-1568017465'pad=0 3'pad=0 strand=- repeatMasking=none,-101.00;hg19_refFlat_MNX1:range=chr7:156798214-1568030445'pad=0,hg19_refFlat_MNX1:range=chr7:156798214-1568030445'pad=0 3'pad=0 strand=- repeatMasking=none,-101.00chr7:156797547-156803347"	NA	inner
CUST_17142_PI429285431	1.2858901	A	1.1925435	A	1.06684205331583	0	lncRNA	18851-1_{1..282}	lnc-FABP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FABP1-1:1	chr2	 88437854	 88438135	-	lnc-FABP1-1	lnc-FABP1-1:1	XLOC_002197	linc-FABP1	NA	NA	NA	inter
CUST_11260_PI429285431	0.92093986	A	0.91548485	A	1.00378828227206	0	lncRNA	12819-1_{1..755}	lnc-CD83-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD83-2:1	chr6	 14463327	 14464081	+	lnc-CD83-2	lnc-CD83-2:1	XLOC_005180	linc-JARID2-4	NA	NA	NA	inter
CUST_45442_PI429285431	6.6687984	P	7.0538006	P	0.765777830793464	0	lncRNA	49860-1_{1..2123}	"gi|337299691|ref|NR_038955.1| Homo sapiens uncharacterized LOC100506190 (LOC100506190), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|337299691|ref|NR_038955.1| Homo sapiens uncharacterized LOC100506190 (LOC100506190), non-coding RNA"	Chr9	132250939	132253061	+	100506190	NR_038955.1	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_30443_PI429285431	8.908453	P	9.183515	P	0.82641480211148	0	lncRNA	32223-1_{1..354}	n335580|CR542238|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000269106|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000269106|1.8194700|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335580|CR542238|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000269106|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000269106|1.8194700|-1.0000000	chr9	140083179	140083532	+	NA	NA	NA	NA	SSNA1	NA	chr9:140083054-140084822	inner
CUST_802_PI429285431	0.90897393	A	0.9079541	A	1.00070714219639	0	lncRNA	795-1_{1..379}	"transcript_id ""ENST00000451511.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451511.1"" | genecode_v17"	chr2	 21618948	 21619326	+	ENSG00000231204.1	ENST00000451511.1	AC011752.1	AC011752.1-003	NA	NA	NA	inter
CUST_7724_PI429285431	5.7742443	P	5.581425	P	1.1429951643657	0	lncRNA	9355-1_{1..457}	lnc-PAIP1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PAIP1-1:4	chr5	 43602880	 43603336	-	lnc-PAIP1-1	lnc-PAIP1-1:4	ENSG00000248092	RP11-159F24.1	NNT	NA	chr5:43592880-43613165	inner
CUST_12602_PI429285431	0.90228295	A	1.1005701	A	0.871584744473304	0	lncRNA	14215-1_{1..588}	lnc-GRIP1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRIP1-4:1	chr12	 67836568	 67837155	-	lnc-GRIP1-4	lnc-GRIP1-4:1	XLOC_010112	linc-GRIP1-7	NA	NA	NA	inter
CUST_44276_PI429285431	0.9081057	A	1.456984	A	0.683551385207686	0	lncRNA	48913-1_{1..1585}	"gi|397139052|ref|XR_158776.1| PREDICTED: Homo sapiens putative uncharacterized protein NCRNA00269-like (LOC100507556), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139052|ref|XR_158776.1| PREDICTED: Homo sapiens putative uncharacterized protein NCRNA00269-like (LOC100507556), misc_RNA"	NA	NA	NA	NA	NA	XR_158776.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70"	NA	Unknown
LNCA_21_P0014799	4.1040797	P	4.840199	P	0.600352067101452	0	lncRNA	XR_132602	XR_132602	XR_132602	NA	NA	LOC100652876	uncharacterized LOC100652876	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652876 (LOC100652876), miscRNA [XR_132602]"	chr16:2813049-2803135	hs|16p13.3	Agilent_HUMAN_G3V2	XR_132602	XR_132602	chr16	  2803135	  2813049	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25347_PI429285431	0.9180135	A	0.9044546	A	1.00944261613485	0	lncRNA	26878-1_{1..481}	lnc-C2CD4A-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2CD4A-7:1	chr15	 61505983	 61506463	+	lnc-C2CD4A-7	lnc-C2CD4A-7:1	ENSG00000259575.1	RP11-39M21.2	RORA	NA	chr15:61495983-61516430	inner
CUST_45461_PI429285431	2.6774437	A	2.6943324	A	0.988361897992858	0	lncRNA	49876-2_{3001..5037}	"gi|380036071|ref|NR_026964.2| Homo sapiens uncharacterized LOC26102 (DKFZP434A062), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|380036071|ref|NR_026964.2| Homo sapiens uncharacterized LOC26102 (DKFZP434A062), non-coding RNA"	NW_003315927.1	    16207	    18243	-	26102	NR_026964.3	NA	NA	NA	NA	NA	Unknown
CUST_4832_PI429285431	0.911894	A	1.1417354	A	0.852728629753662	0	lncRNA	4775-1_{1..385}	"transcript_id ""ENST00000554046.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554046.1"" | genecode_v17"	chr14	 54937427	 54937811	+	ENSG00000258753.1	ENST00000554046.1	RP11-794A8.1	RP11-794A8.1-001	GMFB	NA	chr14:54941209-54947936	inter
CUST_51323_PI429285431	0.8987409	A	1.1736271	A	0.826515511249758	0	lncRNA	54927-1_{1..468}	hg19_lincRNAsTranscripts_TCONS_l2_00009063 range=chr15:43995753-43997041 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009063 range=chr15:43995753-43997041 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 43995753	 43996220	-	NA	NA	NA	NA	CKMT1A	NA	chr15:43985753-43991420	inter
CUST_1529_PI429285431	0.8984516	A	0.90622663	A	0.994625255778961	0	lncRNA	1516-1_{1..503}	"transcript_id ""ENST00000488173.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000488173.1"" | genecode_v17"	chr3	162936848	162937350	-	ENSG00000241369.1	ENST00000488173.1	CT64	CT64-006	NA	NA	NA	inter
CUST_20869_PI429285431	3.537311	P	3.866236	P	0.796129485321118	0	lncRNA	22500-1_{1..600}	lnc-TSC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TSC2-1:1	chr16	  2144722	  2145321	+	lnc-TSC2-1	lnc-TSC2-1:1	ENSG00000259933.1	RP11-304L19.1	TSC2	"hg19_refFlat_PKD1:range=chr16:2139728-21856905'pad=0,hg19_refFlat_PKD1:range=chr16:2139728-21856905'pad=0 3'pad=0 strand=- repeatMasking=none,-110.50chr16:2134722-2138713"	NA	inner
CUST_41728_PI429285431	0.90850765	A	0.91397744	A	0.996215808650092	0	lncRNA	43255-1_{1..71}	ENST00000582209 ncrna:miRNA chromosome:GRCh37:12:52504418:52504488:-1 gene:ENSG00000265009 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582209 ncrna:miRNA chromosome:GRCh37:12:52504418:52504488:-1 gene:ENSG00000265009 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 52504418	 52504488	-	ENSG00000265009	ENST00000582209	NA	NA	NA	NA	NA	inter
CUST_41042_PI429285431	0.9962066	A	0.9077751	A	1.0632136265697	0	lncRNA	41702-1_{1..616}	n411709|NR_044996_5|lncRNA|Homosapiens||RefGeneNoncode|NR_044996_5||-1.3046700|-0.2716044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411709|NR_044996_5|lncRNA|Homosapiens||RefGeneNoncode|NR_044996_5||-1.3046700|-0.2716044	chr6	  3701121	  3701736	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21130_PI429285431	5.0811625	P	3.9858224	P	2.13663444555916	0	lncRNA	22756-1_{1..796}	lnc-LIMS3.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIMS3.1-1:2	chr2	110725647	110726442	+	lnc-LIMS3.1-1	lnc-LIMS3.1-1:2	ENSG00000186148.6	AC013271.3	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20"	NA	inter
CUST_37787_PI429285431	2.5233288	A	1.4167583	A	2.15333159567889	0	lncRNA	38883-1_{1..3000}	n346297|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1847|NULL|-1.3300400|-0.2943890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346297|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1847|NULL|-1.3300400|-0.2943890	chr20	 39617034	 39620033	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80"	NA	inter
CUST_20237_PI429285431	1.8076189	A	1.7071512	A	1.0721209716736	0	lncRNA	21880-1_{1..339}	lnc-LAMA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LAMA2-2:1	chr6	128827139	128827477	+	lnc-LAMA2-2	lnc-LAMA2-2:1	ENSG00000227112.1	RP1-86D1.4	PTPRK	NA	chr6:128817139-128837421	inner
CUST_22921_PI429285431	0.9042543	A	1.3740578	A	0.72206293850631	0	lncRNA	24497-1_{1..1350}	lnc-BBOX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BBOX1-1:1	chr11	 27497316	 27498665	+	lnc-BBOX1-1	lnc-BBOX1-1:1	ENSG00000254862.1	RP11-159H22.2	LIN7C	NA	chr11:27505366-27507768	inter
CUST_15700_PI429285431	3.324395	A	3.3782299	P	0.963372134670034	0	lncRNA	17388-1_{1..255}	lnc-DHX37-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-2:1	chr12	125668808	125669062	-	lnc-DHX37-2	lnc-DHX37-2:1	XLOC_010237	linc-DHX37-23	NA	NA	NA	inter
CUST_17070_PI429285431	5.639577	P	5.6681557	P	0.980385668616677	0	lncRNA	18779-1_{1..343}	lnc-TTC7B-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC7B-4:2	chr14	 90921441	 90921783	-	lnc-TTC7B-4	lnc-TTC7B-4:2	XLOC_011102	linc-C14orf102-2	NA	NA	NA	inter
CUST_23932_PI429285431	0.9173403	A	0.9282569	A	0.992461745727413	0	lncRNA	25489-1_{1..497}	lnc-PSMA2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PSMA2-2:3	chr7	 43288782	 43289278	-	lnc-PSMA2-2	lnc-PSMA2-2:3	ENSG00000228680.1	AC004692.4	HECW1	NA	chr7:43278782-43298841	inner
CUST_27925_PI429285431	11.832504	P	11.964128	P	0.912803355404426	0	lncRNA	29526-1_{1..745}	n325169|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000109049|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000109049|0.2388920|-0.2800391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325169|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000109049|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000109049|0.2388920|-0.2800391	chr2	113986509	113987253	+	NA	NA	NA	NA	PAX8	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90chr2:113976509-113999532"	NA	inner
LNCA_21_P0003262	2.332086	A	2.0895581	A	1.18306381876976	0	lncRNA	TCONS_00007043	NA	NA	NA	NA	XLOC_002927	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002927), lincRNA [TCONS_00007043]"	chr3:176415507-176431515	hs|3q26.32	Agilent_HUMAN_G3V2	TCONS_00007043	TCONS_00007043	chr3	176415507	176431515	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46345_PI429285431	0.89647704	A	1.2086797	A	0.805411144414998	0	lncRNA	50569-1_{1..806}	"gi|397139516|ref|XR_159025.1| PREDICTED: Homo sapiens uncharacterized LOC100996664 (LOC100996664), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139516|ref|XR_159025.1| PREDICTED: Homo sapiens uncharacterized LOC100996664 (LOC100996664), misc_RNA"	Chr14	 69093883	 69094688	-	100996664	XR_159025.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0008559	3.477679	P	3.712099	P	0.850026662734444	0	lncRNA	BC104435	NA	BC104435	NA	NA	LOC145837	uncharacterized LOC145837	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011294), lincRNA [TCONS_00023233]"	chr15:69840739-69840798	hs|15q23	Agilent_HUMAN_G3V2	BC104435	BC104435	chr15	 69840739	 69840798	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2910_PI429285431	0.8996485	A	1.0955236	A	0.873043170773897	0	lncRNA	2891-1_{1..737}	"transcript_id ""ENST00000471672.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000471672.1"" | genecode_v17"	chr7	115287515	115288251	-	ENSG00000242072.1	ENST00000471672.1	RP11-458K10.1	RP11-458K10.1-001	NA	NA	NA	inter
CUST_24220_PI429285431	5.5770802	P	5.454785	P	1.0884651374093	0	lncRNA	25771-1_{1..1444}	lnc-C10orf10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf10-1:1	chr10	 45415376	 45416819	-	lnc-C10orf10-1	lnc-C10orf10-1:1	ENSG00000234504.1	RP11-285G1.2	TMEM72	NA	chr10:45406764-45425668	inter
CUST_27961_PI429285431	7.990975	P	7.8244276	P	1.12236925893272	0	lncRNA	29565-1_{1..709}	n325210|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329249|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329249|-1.3421000|-0.5018116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325210|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329249|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329249|-1.3421000|-0.5018116	chr2	104686647	104687355	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37441_PI429285431	1.4862885	A	2.3442554	A	0.551729528301055	0	lncRNA	38541-1_{1..3000}	n345890|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1439|NULL|-1.3147000|-0.2975421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345890|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1439|NULL|-1.3147000|-0.2975421	chrX	124518694	124521693	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22300_PI429285431	5.68325	P	6.119068	P	0.739274471289376	0	lncRNA	23900-1_{1..441}	lnc-SSR3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SSR3-2:1	chr3	156391996	156392436	-	lnc-SSR3-2	lnc-SSR3-2:1	ENSG00000243926.1	TIPARP-AS1	TIPARP	NA	chr3:156392205-156402167	inter
CUST_6674_PI429285431	0.920297	A	0.91432285	A	1.00414955087211	0	lncRNA	6621-1_{1..468}	"transcript_id ""ENST00000438287.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438287.1"" | genecode_v17"	chr20	 25123876	 25124343	-	ENSG00000230725.1	ENST00000438287.1	RP4-738P15.1	RP4-738P15.1-001	NA	NA	NA	inter
CUST_39623_PI429285431	0.91075295	A	1.0301268	A	0.920587111726039	0	lncRNA	40562-1_{1..1980}	n387733|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011mkp.1||6.5027000|-0.1473522	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387733|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011mkp.1||6.5027000|-0.1473522	chrX	 40690469	 40692448	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005953	0.9212322	A	0.91532516	A	1.00410284182612	0	lncRNA	THC2724374	NA	NA	NA	NA	XLOC_006934	NA	NA	THC2724374	NA	"BROAD Institute lincRNA (XLOC_006934), lincRNA [TCONS_00015370]"	chr8:135779263-135779322	hs|8q24.22	Agilent_HUMAN_G3V2	THC2724374	THC2724374	chr8	135779263	135779322	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9364_PI429285431	5.5182004	P	5.577841	P	0.959503118185747	0	lncRNA	10866-3_{6001..9000}	lnc-POTEJ-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POTEJ-1:1	chr2	131443298	131446297	+	lnc-POTEJ-1	lnc-POTEJ-1:1	XLOC_001671	linc-GPR148-2	NA	NA	NA	inter
CUST_5789_PI429285431	1.7808748	A	1.8507358	A	0.952729786715268	0	lncRNA	5711-1_{1..480}	"transcript_id ""ENST00000580686.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580686.1"" | genecode_v17"	chr17	 25316215	 25316694	-	ENSG00000264734.1	ENST00000580686.1	RP11-260A9.6	RP11-260A9.6-001	NA	NA	NA	inter
CUST_29176_PI429285431	0.9139168	A	1.0291252	A	0.923248936058985	0	lncRNA	30922-1_{1..491}	n326690|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006932|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006932|-1.2906800|-0.2625232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326690|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006932|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006932|-1.2906800|-0.2625232	chr1	 18584909	 18585399	+	NA	NA	NA	NA	IGSF21	NA	chr1:18574909-18597595	inner
CUST_2848_PI429285431	4.2744007	P	3.883866	P	1.31087915946986	0	lncRNA	2831-1_{1..529}	"transcript_id ""ENST00000596855.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596855.1"" | genecode_v17"	chr7	 63348603	 63349131	-	ENSG00000236299.3	ENST00000596855.1	RP11-340I6.7	RP11-340I6.7-009	NA	"hg19_refFlat_GABPA:range=chr21:27113910-271415435'pad=0,hg19_refFlat_GABPA:range=chr21:27113910-271415435'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30"	NA	inter
CUST_5560_PI429285431	2.9721622	A	2.785408	A	1.13820009105696	0	lncRNA	5490-1_{1..593}	"transcript_id ""ENST00000565307.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565307.1"" | genecode_v17"	chr16	 55463047	 55463639	-	ENSG00000260135.2	ENST00000565307.1	RP11-212I21.2	RP11-212I21.2-002	NA	NA	NA	inter
CUST_9104_PI429285431	1.6933239	A	1.7692375	A	0.948741131568701	0	lncRNA	10626-1_{1..3000}	lnc-C6orf125-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C6orf125-1:1	chr6	 33650151	 33653150	-	lnc-C6orf125-1	lnc-C6orf125-1:1	ENSG00000248398	ENST00000511225	ITPR3	"hg19_refFlat_ITPR3:range=chr6:33589380-336635575'pad=0,hg19_refFlat_ITPR3:range=chr6:33589380-336635575'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.30chr6:33640151-33662467"	NA	inner
CUST_51508_PI429285431	7.716099	P	7.3272943	P	1.30930816788651	0	lncRNA	55084-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00010364 range=chr16:89262175-89267575 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010364 range=chr16:89262175-89267575 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 89262175	 89265174	-	NA	NA	NA	NA	CDH15	NA	chr16:89252175-89261900	inner
CUST_29459_PI429285431	1.6675043	A	2.2597005	A	0.663332353964442	0	lncRNA	31217-1_{1..541}	n332866|AF085925|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066804|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066804|-1.1818100|-0.3109920	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332866|AF085925|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066804|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066804|-1.1818100|-0.3109920	chr13	 28198330	 28198870	+	NA	NA	NA	NA	LNX2	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90chr13:28188330-28194720"	NA	inner
CUST_22796_PI429285431	0.9044459	A	1.0279914	A	0.917929016894262	0	lncRNA	24376-1_{1..1747}	lnc-ZCCHC17-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ZCCHC17-2:1	chr1	 31331564	 31333310	+	lnc-ZCCHC17-2	lnc-ZCCHC17-2:1	ENSG00000235143.1	RP1-65J11.5	SDC3	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80chr1:31342313-31343101"	NA	inter
CUST_29365_PI429285431	0.9054241	A	1.0563718	A	0.900658629570287	0	lncRNA	31117-1_{1..380}	n332625|AB006988|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000058120|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000058120|-0.8420020|-0.1387668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332625|AB006988|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000058120|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000058120|-0.8420020|-0.1387668	chr3	 69812962	 69813341	-	NA	NA	NA	NA	MITF	"hg19_refFlat_MITF:range=chr3:69915442-700143995'pad=0,hg19_refFlat_MITF:range=chr3:69915442-700143995'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70;hg19_refFlat_MITF:range=chr3:69928337-700143995'pad=0,hg19_refFlat_MITF:range=chr3:69928337-700143995'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70;hg19_refFlat_MITF:range=chr3:69812993-700143995'pad=0,hg19_refFlat_MITF:range=chr3:69812993-700143995'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70;hg19_refFlat_MITF:range=chr3:69788749-700143995'pad=0,hg19_refFlat_MITF:range=chr3:69788749-700143995'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70chr3:69802962-69938534"	NA	inner
CUST_50841_PI429285431	4.4290605	P	5.4578648	P	0.490116186885126	0	lncRNA	54486-1_{1..1294}	hg19_lincRNAsTranscripts_TCONS_l2_00004589 range=chr11:66176792-66184301 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004589 range=chr11:66176792-66184301 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 66176792	 66178085	+	NA	NA	NA	NA	NPAS4	NA	chr11:66188475-66194177	inter
CUST_24629_PI429285431	3.8438215	P	3.1735706	P	1.5913496960705	0	lncRNA	26178-1_{1..722}	lnc-CRB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CRB2-1:1	chr9	126254942	126255663	+	lnc-CRB2-1	lnc-CRB2-1:1	ENSG00000237336.1	RP11-230L22.4	DENND1A	NA	chr9:126244942-126265435	inner
LNCA_19_P00802587	6.651236	P	7.106565	P	0.729343829632281	0	lncRNA	ENST00000435044	NA	NA	NA	NA	XLOC_l2_003666	NA	ENST00000435044	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003666), lincRNA [TCONS_l2_00007378]"	chr13:30728278-30728484	hs|13q12.3	Agilent_HUMAN_G3V2	ENST00000435044	ENST00000435044	chr13	 30728278	 30728484	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51247_PI429285431	2.5180018	A	2.655012	A	0.909401822215052	0	lncRNA	54860-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008473 range=chr15:28881633-28930461 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008473 range=chr15:28881633-28930461 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28881633	 28884632	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010581	4.1288714	P	3.764941	P	1.28692716052033	0	lncRNA	TCONS_l2_00000903	NA	NA	NA	NA	XLOC_l2_000676	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000676), lincRNA [TCONS_l2_00000903]"	chr1:233046582-233048754	hs|1q42.2	Agilent_HUMAN_G3V2	TCONS_l2_00000903	TCONS_l2_00000903	chr1	233046582	233048754	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4908_PI429285431	1.0946304	A	0.89414847	A	1.14908213996623	0	lncRNA	4850-1_{1..861}	"transcript_id ""ENST00000556781.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556781.1"" | genecode_v17"	chr14	 77540885	 77541745	-	ENSG00000258819.1	ENST00000556781.1	RP11-7F17.3	RP11-7F17.3-003	NA	NA	NA	inter
CUST_6519_PI429285431	8.12128	P	8.020445	P	1.07239396087372	0	lncRNA	6461-1_{1..711}	"transcript_id ""ENST00000599801.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599801.1"" | genecode_v17"	chr19	 41960443	 41961153	-	ENSG00000267107.2	ENST00000599801.1	AC011526.1	AC011526.1-006	C19orf69	NA	chr19:41950443-41950670	inter
LNCA_21_P0009525	2.0294855	A	2.4759295	A	0.733849435704076	0	lncRNA	TCONS_00026417	NA	NA	NA	NA	XLOC_012762	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012762), lincRNA [TCONS_00026417]"	chr18:10405089-10405030	hs|18p11.22	Agilent_HUMAN_G3V2	TCONS_00026417	TCONS_00026417	chr18	 10405030	 10405089	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1530_PI429285431	5.9289837	P	6.0314293	P	0.931452690446584	0	lncRNA	1517-1_{1..568}	"transcript_id ""ENST00000493473.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000493473.1"" | genecode_v17"	chr3	162937704	162938271	-	ENSG00000241369.1	ENST00000493473.1	CT64	CT64-005	NA	NA	NA	inter
LNCA_21_P0007854	3.77155	P	4.318336	P	0.684543439737364	0	lncRNA	TCONS_00021223	NA	NA	NA	NA	XLOC_009911	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009911), lincRNA [TCONS_00021223]"	chr12:121343059-121343118	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00021223	TCONS_00021223	chr12	121343059	121343118	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41873_PI429285431	5.7884293	P	6.249472	P	0.726461023121185	0	lncRNA	43540-1_{1..91}	ENST00000408396 ncrna:miRNA chromosome:GRCh37:12:120151439:120151529:-1 gene:ENSG00000221323 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408396 ncrna:miRNA chromosome:GRCh37:12:120151439:120151529:-1 gene:ENSG00000221323 gene_biotype:miRNA transcript_biotype:miRNA	chr12	120151439	120151529	-	ENSG00000221323	ENST00000408396	NA	NA	CIT	NA	chr12:120141439-120161529	inner
CUST_3381_PI429285431	2.3064098	A	2.7616005	A	0.729413749527797	0	lncRNA	3355-1_{1..443}	"transcript_id ""ENST00000523363.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523363.1"" | genecode_v17"	chr9	 26746951	 26747393	+	ENSG00000254261.1	ENST00000523363.1	RP11-18A15.1	RP11-18A15.1-001	NA	NA	NA	inter
LNCA_21_P0001346	3.437704	P	4.0288796	P	0.663801778548559	0	lncRNA	TCONS_00001045	NA	NA	NA	NA	XLOC_000306	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000306), lincRNA [TCONS_00001045]"	chr1:95550479-95550538	hs|1p21.3	Agilent_HUMAN_G3V2	TCONS_00001045	TCONS_00001045	chr1	 95550479	 95550538	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43702_PI429285431	2.3112557	A	2.1484716	A	1.11944535058859	0	lncRNA	48451-1_{1..2553}	"gi|371122776|ref|NR_045784.1| Homo sapiens chitinase 1 (chitotriosidase) (CHIT1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371122776|ref|NR_045784.1| Homo sapiens chitinase 1 (chitotriosidase) (CHIT1), transcript variant 3, non-coding RNA"	Chr1	203185207	203187759	-	1118	NR_045784.1	NA	NA	NA	NA	NA	inter
CUST_36912_PI429285431	5.9265513	P	5.2182198	P	1.63391337691195	0	lncRNA	38072-1_{1..3000}	n345385|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_934|NULL|-1.6557800|-0.3398362	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n345385|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_934|NULL|-1.6557800|-0.3398362	chr20	 31442379	 31445378	+	NA	NA	NA	NA	EFCAB8	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr20:31446729-31456532"	NA	inter
CUST_29613_PI429285431	5.755406	P	6.0074096	P	0.839729397539694	0	lncRNA	31374-1_{1..209}	n333159|AF388194|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078802|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078802|1.0972900|-0.1192295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333159|AF388194|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078802|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078802|1.0972900|-0.1192295	chr15	 74325509	 74325717	+	NA	NA	NA	NA	PML	NA	chr15:74315509-74335718	inner
CUST_16610_PI429285431	0.9273206	A	0.90022224	A	1.01896066490466	0	lncRNA	18310-1_{1..1344}	lnc-SPRY1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPRY1-1:2	chr4	124448339	124449682	+	lnc-SPRY1-1	lnc-SPRY1-1:2	XLOC_003680	linc-FAT4-3	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60"	NA	inter
CUST_16024_PI429285431	0.8893281	A	0.88599813	A	1.00231082516724	0	lncRNA	17721-1_{1..492}	lnc-F3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-F3-2:2	chr1	 95088275	 95088766	-	lnc-F3-2	lnc-F3-2:2	XLOC_000922	linc-F3-4	NA	NA	NA	inter
CUST_33904_PI429285431	5.488801	P	5.6373186	P	0.902176992663514	0	lncRNA	35446-1_{1..493}	n340696|CR622968|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3159|NULL|-0.9671310|-0.2135502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340696|CR622968|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3159|NULL|-0.9671310|-0.2135502	chr5	153798763	153799255	-	NA	NA	NA	NA	GALNT10	NA	chr5:153788763-153800544	inner
LNCA_21_P0004703	0.9077535	A	0.8971364	A	1.00738635848732	0	lncRNA	ENST00000446476	NA	NA	NA	NA	XLOC_005530	NA	ENST00000446476	NA	NA	"BROAD Institute lincRNA (XLOC_005530), lincRNA [TCONS_00011409]"	chr6:164009136-164009195	hs|6q26	Agilent_HUMAN_G3V2	ENST00000446476	ENST00000446476	chr6	164009136	164009195	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30298_PI429285431	10.107816	P	10.431695	P	0.798918919615296	0	lncRNA	32074-1_{1..317}	n335198|AY466378|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254849|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254849|-1.4432300|-0.0663148	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335198|AY466378|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254849|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254849|-1.4432300|-0.0663148	chr8	 54163577	 54163893	-	NA	NA	NA	NA	OPRK1	NA	chr8:54153577-54164194	inner
CUST_23427_PI429285431	5.0583553	P	5.345429	P	0.819562739248836	0	lncRNA	24995-1_{1..506}	lnc-OAZ3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OAZ3-2:1	chr1	151822709	151823214	+	lnc-OAZ3-2	lnc-OAZ3-2:1	ENSG00000234614.1	AL450992.2	THEM5	NA	chr1:151819577-151826173	inner
CUST_35803_PI429285431	8.081167	P	8.106619	P	0.98251272660055	0	lncRNA	37210-1_{1..907}	n344480|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_28|NULL|-1.5347700|-0.0989234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344480|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_28|NULL|-1.5347700|-0.0989234	chr20	 31148934	 31149840	+	NA	NA	NA	NA	LOC284804	NA	chr20:31138934-31172165	inner
CUST_19935_PI429285431	1.194127	A	0.89516634	A	1.23025779711963	0	lncRNA	21590-1_{1..717}	lnc-RPL31-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RPL31-1:1	chr2	101463298	101464014	+	lnc-RPL31-1	lnc-RPL31-1:1	ENSG00000232034.1	AC092168.2	NPAS2	NA	chr2:101453298-101473682	inner
CUST_20790_PI429285431	2.7767038	A	3.021738	A	0.843795793179042	0	lncRNA	22423-1_{1..566}	lnc-FAM13B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM13B-1:1	chr5	137224836	137225401	-	lnc-FAM13B-1	lnc-FAM13B-1:1	ENSG00000250159.1	RP11-381K20.2	PKD2L2	"hg19_refFlat_MYOT:range=chr5:137206341-1372230745'pad=0,hg19_refFlat_MYOT:range=chr5:137206341-1372230745'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MYOT:range=chr5:137213230-1372230745'pad=0,hg19_refFlat_MYOT:range=chr5:137213230-1372230745'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60chr5:137225125-137235025"	NA	inter
CUST_39867_PI429285431	3.9166248	P	2.9915292	P	1.89881006213506	0	lncRNA	40765-1_{1..3000}	n406538|NR_024052|lncRNA|Homosapiens||RefGeneNoncode|NR_024052||0.1745660|-0.2402520	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406538|NR_024052|lncRNA|Homosapiens||RefGeneNoncode|NR_024052||0.1745660|-0.2402520	chr6	  1548085	  1551084	-	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40"	NA	inter
CUST_35500_PI429285431	7.1417613	P	7.1417613	P	1	0	lncRNA	36909-1_{1..2792}	n342602|BC041902|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5103|NULL|-1.2778900|-0.3951005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n342602|BC041902|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5103|NULL|-1.2778900|-0.3951005	chr4	 68919225	 68922016	+	NA	NA	NA	NA	TMPRSS11F	"hg19_refFlat_SYT14:range=chr1:210111610-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111610-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_SYT14:range=chr1:210187031-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210187031-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80chr4:68918916-68948945"	NA	inner
CUST_28886_PI429285431	0.9098665	A	0.9132843	A	0.997633765523168	0	lncRNA	30602-1_{1..628}	n326309|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091034|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091034|-1.1930900|-0.2906742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326309|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091034|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091034|-1.1930900|-0.2906742	chr1	180363054	180363681	-	NA	NA	NA	NA	ACBD6	NA	chr1:180353054-180374423	inner
CUST_16549_PI429285431	1.4968817	A	1.8678999	A	0.773236582798806	0	lncRNA	18250-1_{1..1373}	lnc-SKIL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SKIL-1:1	chr3	170071334	170072706	+	lnc-SKIL-1	lnc-SKIL-1:1	XLOC_002918	linc-SKIL	SKIL	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-14.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60chr3:170075473-170082227"	NA	inter
CUST_32966_PI429285431	0.89577836	A	0.8883741	A	1.00514543445621	0	lncRNA	34583-1_{1..1979}	n339641|BC037912|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2085|NULL|-0.9065030|-0.3445473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339641|BC037912|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2085|NULL|-0.9065030|-0.3445473	chr3	149795280	149797258	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010457	0.914039	A	0.9032662	A	1.00749508452834	0	lncRNA	THC2718174	NA	NA	NA	NA	XLOC_014410	NA	NA	THC2718174	NA	"BROAD Institute lincRNA (XLOC_014410), lincRNA [TCONS_00029735]"	chr22:049441306-049441247	hs|22q13.33	Agilent_HUMAN_G3V2	THC2718174	THC2718174	chr22	 49441247	 49441306	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36434_PI429285431	4.1599307	P	4.6142564	P	0.729851216948983	0	lncRNA	37648-1_{1..1122}	n344948|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_497|NULL|-1.4237800|-0.2704063	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344948|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_497|NULL|-1.4237800|-0.2704063	chr7	 26460582	 26461703	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40485_PI429285431	0.91379195	A	1.0453146	A	0.912867482518648	0	lncRNA	41250-1_{1..2609}	n409420|NR_033821_3|lncRNA|Homosapiens||RefGeneNoncode|NR_033821_3||0.2776480|-0.2838946	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409420|NR_033821_3|lncRNA|Homosapiens||RefGeneNoncode|NR_033821_3||0.2776480|-0.2838946	chr6	  1926891	  1929499	+	NA	NA	NA	NA	GMDS	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00chr6:1916891-1954728"	NA	inner
CUST_42824_PI429285431	1.8973432	A	1.7356012	A	1.11863703507956	0	lncRNA	45835-1_{1..74}	ENST00000390976 ncrna:snoRNA chromosome:GRCh37:5:18236232:18236305:1 gene:ENSG00000212278 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390976 ncrna:snoRNA chromosome:GRCh37:5:18236232:18236305:1 gene:ENSG00000212278 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	 18236232	 18236305	+	ENSG00000212278	ENST00000390976	NA	NA	NA	NA	NA	inter
CUST_3044_PI429285431	1.0626063	A	0.9173831	A	1.10590173464169	0	lncRNA	3023-1_{1..491}	"transcript_id ""ENST00000521681.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521681.1"" | genecode_v17"	chr8	 24027470	 24027960	-	ENSG00000253891.1	ENST00000521681.1	RP11-203E8.1	RP11-203E8.1-001	NA	NA	NA	inter
CUST_16166_PI429285431	2.83236	A	2.4995027	A	1.25950539345916	0	lncRNA	17872-1_{1..917}	lnc-CDK12-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK12-1:4	chr17	 37723041	 37723957	+	lnc-CDK12-1	lnc-CDK12-1:4	XLOC_012192	linc-PPP1R1B	NA	NA	NA	inter
CUST_23213_PI429285431	4.7629333	P	5.149552	P	0.764920278377855	0	lncRNA	24785-1_{1..500}	lnc-COL6A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COL6A2-1:1	chr21	 47572208	 47572707	+	lnc-COL6A2-1	lnc-COL6A2-1:1	ENSG00000237338.1	FTCD-AS1	C21orf56	"hg19_refFlat_FTCD:range=chr21:47556901-475754375'pad=0,hg19_refFlat_FTCD:range=chr21:47556901-475754375'pad=0 3'pad=0 strand=- repeatMasking=none,-100.80chr21:47581062-47582561"	NA	inner
CUST_48200_PI429285431	1.4079312	A	1.5702102	A	0.893612331687397	0	lncRNA	52063-1_{1..1149}	"gi|410170214|ref|XR_159531.2| PREDICTED: Homo sapiens RNA-binding motif protein, Y chromosome, family 1 member F/J-like (LOC100996822), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410170214|ref|XR_159531.2| PREDICTED: Homo sapiens RNA-binding motif protein, Y chromosome, family 1 member F/J-like (LOC100996822), misc_RNA"	NA	NA	NA	NA	NA	XR_159531.2	NA	NA	NA	NA	NA	Unknown
CUST_42823_PI429285431	1.7571249	A	3.0729477	A	0.401696333974149	0	lncRNA	45834-1_{1..86}	ENST00000517263 ncrna:snoRNA chromosome:GRCh37:11:15503354:15503439:-1 gene:ENSG00000253072 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517263 ncrna:snoRNA chromosome:GRCh37:11:15503354:15503439:-1 gene:ENSG00000253072 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 15503354	 15503439	-	ENSG00000253072	ENST00000517263	NA	NA	NA	NA	NA	inter
CUST_34605_PI429285431	4.858976	P	2.5619664	A	4.9143806230089	0	lncRNA	36060-1_{1..2435}	n341486|AK025702|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3956|NULL|-1.3580200|-0.3262314	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341486|AK025702|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3956|NULL|-1.3580200|-0.3262314	chr8	 38127216	 38129650	-	NA	NA	NA	NA	WHSC1L1	NA	chr8:38132560-38139627	inter
CUST_19072_PI429285431	1.4148304	A	2.1298485	A	0.609197488819907	0	lncRNA	20763-1_{1..319}	lnc-RWDD3-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RWDD3-5:3	chr1	 96088165	 96088483	+	lnc-RWDD3-5	lnc-RWDD3-5:3	ENSG00000228971	RP11-286B14.1	NA	NA	NA	inter
CUST_28452_PI429285431	0.9039415	A	0.9011681	A	1.00192422333681	0	lncRNA	30112-1_{1..508}	n325779|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044350|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044350|-1.3124800|-0.4821261	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325779|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044350|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044350|-1.3124800|-0.4821261	chr13	 29813495	 29814002	-	NA	NA	NA	NA	MTUS2	NA	chr13:29803495-29849804	inner
CUST_5137_PI429285431	1.3023982	A	0.9235742	A	1.30028151045489	0	lncRNA	5077-1_{1..487}	"transcript_id ""ENST00000565706.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565706.1"" | genecode_v17"	chr15	 34943336	 34943822	-	ENSG00000261304.1	ENST00000565706.1	CTD-2125J1.1	CTD-2125J1.1-001	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
CUST_33092_PI429285431	0.9650364	A	0.91595757	A	1.03460411156279	0	lncRNA	34696-1_{1..509}	n339782|AF086140|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2229|NULL|-1.0982100|-0.3073824	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339782|AF086140|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2229|NULL|-1.0982100|-0.3073824	chr18	  6641969	  6642477	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002097	5.5531135	P	5.4281926	P	1.09044794400962	0	lncRNA	ENST00000441053	NA	NA	NA	NA	XLOC_002299	NA	ENST00000441053	NA	NA	"BROAD Institute lincRNA (XLOC_002299), lincRNA [TCONS_00003394]"	chr2:121839362-121839303	hs|2q14.2	Agilent_HUMAN_G3V2	ENST00000441053	ENST00000441053	chr2	121839303	121839362	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39591_PI429285431	5.8435845	P	6.04393	P	0.87034210676249	0	lncRNA	40534-1_{1..2516}	n387593|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jdy.1||-0.9938060|-0.2694768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387593|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jdy.1||-0.9938060|-0.2694768	chr6	  1225316	  1227831	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35263_PI429285431	0.90572107	A	0.9183533	A	0.991282227473309	0	lncRNA	36663-2_{3001..3091}	n342269|BC040576|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4759|NULL|-0.9866860|-0.2873884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n342269|BC040576|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4759|NULL|-0.9866860|-0.2873884	chr22	 25678289	 25678379	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ADRBK1:range=chr11:67034171-670529215'pad=0,hg19_refFlat_ADRBK1:range=chr11:67034171-670529215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_ADRBK2:range=chr22:25961008-261184175'pad=0,hg19_refFlat_ADRBK2:range=chr22:25961008-261184175'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30"	NA	inter
CUST_27954_PI429285431	0.90295136	A	0.90767205	A	0.996733214629001	0	lncRNA	29558-1_{1..722}	n325202|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329331|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329331|-0.9121100|-0.5154139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325202|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329331|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329331|-0.9121100|-0.5154139	chr2	104790466	104791187	-	NA	NA	NA	NA	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00"	NA	inter
LNCA_21_P0003265	0.92737365	A	1.1350734	A	0.865916759148291	0	lncRNA	TCONS_00007047	NA	NA	NA	NA	XLOC_002937	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002937), lincRNA [TCONS_00007047]"	chr3:180132223-180220730	hs|3q26.33	Agilent_HUMAN_G3V2	TCONS_00007047	TCONS_00007047	chr3	180132223	180220730	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5675_PI429285431	0.91368794	A	0.9004085	A	1.00924709906088	0	lncRNA	5600-1_{1..901}	"transcript_id ""ENST00000595705.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595705.1"" | genecode_v17"	chr16	 86380993	 86381893	+	ENSG00000269826.1	ENST00000595705.1	RP11-158I3.3	RP11-158I3.3-001	NA	NA	NA	inter
CUST_24817_PI429285431	3.0551498	P	3.6778963	P	0.6494334051086	0	lncRNA	26357-1_{1..546}	lnc-FPGS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FPGS-2:1	chr9	130702953	130703498	+	lnc-FPGS-2	lnc-FPGS-2:1	ENSG00000227218.1	RP11-203J24.8	FAM102A	NA	chr9:130702861-130713231	inner
CUST_15591_PI429285431	0.91678226	A	1.403659	A	0.713568215611687	0	lncRNA	17278-1_{1..2949}	lnc-MANEA-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MANEA-3:5	chr6	 94454425	 94457373	+	lnc-MANEA-3	lnc-MANEA-3:5	XLOC_005392	linc-MANEA-3	NA	NA	NA	inter
CUST_41095_PI429285431	3.7279232	P	3.6180475	P	1.07913525615364	0	lncRNA	41798-1_{1..88}	ENST00000362280 ncrna:miRNA chromosome:GRCh37:3:52302292:52302379:-1 gene:ENSG00000199150 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362280 ncrna:miRNA chromosome:GRCh37:3:52302292:52302379:-1 gene:ENSG00000199150 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 52302292	 52302379	-	ENSG00000199150	ENST00000362280	NA	NA	WDR82	NA	chr3:52292292-52312379	inner
CUST_43611_PI429285431	11.298798	P	11.075425	P	1.16745990243677	0	lncRNA	48374-1_{1..1005}	"gi|392508157|ref|NR_052019.1| Homo sapiens SNAP-associated protein (SNAPIN), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392508157|ref|NR_052019.1| Homo sapiens SNAP-associated protein (SNAPIN), transcript variant 2, non-coding RNA"	Chr1	153631130	153632134	+	23557	NR_052019.1	NA	NA	NA	NA	NA	inter
CUST_35825_PI429285431	0.91385704	A	0.8961938	A	1.01231848009288	0	lncRNA	37228-2_{3001..3582}	n344498|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_46|NULL|-1.2951300|-0.3086626	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344498|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_46|NULL|-1.2951300|-0.3086626	chr3	107831598	107832179	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009580	2.890244	A	3.7732265	P	0.542245281857934	0	lncRNA	TCONS_00026561	NA	NA	NA	NA	XLOC_012881	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012881), lincRNA [TCONS_00026561]"	chr18:71351169-71351110	hs|18q22.3	Agilent_HUMAN_G3V2	TCONS_00026561	TCONS_00026561	chr18	 71351110	 71351169	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23205_PI429285431	1.4184997	A	1.4178312	A	1.00046347626215	0	lncRNA	24777-1_{1..560}	lnc-GLDN-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLDN-2:3	chr15	 51752552	 51753111	+	lnc-GLDN-2	lnc-GLDN-2:3	ENSG00000259668.1	RP11-707P17.2	DMXL2	"hg19_refFlat_DMXL2:range=chr15:51741181-519147425'pad=0,hg19_refFlat_DMXL2:range=chr15:51741181-519147425'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10chr15:51742552-51762763"	NA	inner
LNCA_21_P0003337	0.9101846	A	0.91929376	A	0.993705902767988	0	lncRNA	ENST00000514339	NA	NA	NA	NA	XLOC_003464	NA	ENST00000514339	NA	NA	"BROAD Institute lincRNA (XLOC_003464), lincRNA [TCONS_00007481]"	chr4:14145114-14145173	hs|4p15.33	Agilent_HUMAN_G3V2	ENST00000514339	ENST00000514339	chr4	 14145114	 14145173	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24498_PI429285431	2.439167	A	3.0509372	P	0.654393262602554	0	lncRNA	26050-1_{1..386}	lnc-LMO7-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LMO7-2:2	chr13	 76197407	 76197792	+	lnc-LMO7-2	lnc-LMO7-2:2	ENSG00000261553.1	RP11-29G8.3	LMO7	NA	chr13:76194570-76207456	inner
CUST_342_PI429285431	1.3015057	A	0.9171431	A	1.30528296997958	0	lncRNA	335-1_{1..680}	"transcript_id ""ENST00000597635.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597635.1"" | genecode_v17"	chr1	106130202	106130881	-	ENSG00000230768.2	ENST00000597635.1	RP11-251P6.1	RP11-251P6.1-004	NA	NA	NA	inter
CUST_7572_PI429285431	9.497422	P	9.849709	P	0.783341338816968	0	lncRNA	9207-1_{1..711}	lnc-JAM3-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-JAM3-3:7	chr11	133909657	133910367	+	lnc-JAM3-3	lnc-JAM3-3:7	ENSG00000204241	RP11-713P17.3	NA	NA	NA	inter
LNCA_21_P0001600	5.766452	P	5.459783	P	1.23684867381689	0	lncRNA	TCONS_00001756	NA	NA	NA	NA	XLOC_001124	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001124), lincRNA [TCONS_00001756]"	chr1:184618356-184618297	hs|1q25.3	Agilent_HUMAN_G3V2	TCONS_00001756	TCONS_00001756	chr1	184618297	184618356	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28627_PI429285431	0.8982805	A	0.9065765	A	0.994266152601783	0	lncRNA	30312-1_{1..334}	n325996|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047730|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047730|-0.8172140|-0.2388686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325996|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047730|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047730|-0.8172140|-0.2388686	chr10	 43593015	 43593348	-	NA	NA	NA	NA	RET	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-61.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50chr10:43583015-43604080"	NA	inner
CUST_13032_PI429285431	2.4173212	A	3.275912	A	0.551490981953382	0	lncRNA	14657-1_{1..446}	lnc-BTC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTC-1:1	chr4	 75857674	 75858119	-	lnc-BTC-1	lnc-BTC-1:1	XLOC_003982	linc-BTC-2	PARM1	NA	chr4:75858285-75867875	inter
CUST_42674_PI429285431	3.6064866	P	3.5089536	P	1.06994230232755	0	lncRNA	45587-1_{1..80}	ENST00000516472 ncrna:snoRNA chromosome:GRCh37:2:41961517:41961596:1 gene:ENSG00000252281 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516472 ncrna:snoRNA chromosome:GRCh37:2:41961517:41961596:1 gene:ENSG00000252281 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 41961517	 41961596	+	ENSG00000252281	ENST00000516472	NA	NA	NA	NA	NA	inter
CUST_14921_PI429285431	6.658138	P	6.985412	P	0.797041086266599	0	lncRNA	16583-1_{1..252}	lnc-WDR33-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR33-1:1	chr2	128458183	128458434	-	lnc-WDR33-1	lnc-WDR33-1:1	XLOC_002313	linc-LIMS2	WDR33	NA	chr2:128461808-128468363	inter
CUST_36402_PI429285431	0.9877293	A	0.91783434	A	1.0496402584442	0	lncRNA	37620-1_{1..632}	n344919|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_468|NULL|-1.3155700|-0.3664937	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344919|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_468|NULL|-1.3155700|-0.3664937	chr6	 98723039	 98723670	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6712_PI429285431	5.022976	P	5.3793526	P	0.781123949563609	0	lncRNA	6660-1_{1..573}	"transcript_id ""ENST00000411453.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411453.1"" | genecode_v17"	chr20	 48789127	 48789699	+	ENSG00000231742.1	ENST00000411453.1	RP11-112L6.4	RP11-112L6.4-001	NA	NA	NA	inter
CUST_49821_PI429285431	0.9168802	A	0.9227548	A	0.995936316770746	0	lncRNA	53579-1_{1..267}	hg19_lincRNAsTranscripts_TCONS_l2_00025954 range=chr7:64547998-64549243 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025954 range=chr7:64547998-64549243 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 64547998	 64548264	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_89_PI429201921	3.1397164	P	3.5213313	P	0.767577910980505	0	lncRNA	92-1_{1..2578}	TC01005697.hg.1	TCONS_00000602-XLOC_000959 // Rinn lincRNAs // linc-HBXIP chr1:-:111030301-111032880 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:111030301-111032880	NA	Affy_HUMAN_HTA2.0	TCONS_00000602-XLOC_000959	linc-HBXIP	chr1	111030301	111032880	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3874_PI429285431	0.92622566	A	1.1486578	A	0.857119259570841	0	lncRNA	3843-1_{1..343}	"transcript_id ""ENST00000534135.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534135.1"" | genecode_v17"	chr11	 22467234	 22467576	-	ENSG00000255323.1	ENST00000534135.1	CTD-2140G10.1	CTD-2140G10.1-002	NA	NA	NA	inter
LNCA_19_P00321962	1.0581019	A	0.922177	A	1.09879701782119	0	lncRNA	ENST00000413645	NA	NA	NA	NA	XLOC_l2_008991	NA	ENST00000413645	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008991), lincRNA [TCONS_l2_00017326]"	chr21:18012873-18012932	hs|21q21.1	Agilent_HUMAN_G3V2	ENST00000413645	ENST00000413645	chr21	 18012873	 18012932	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48423_PI429285431	2.3216143	A	1.0281248	A	2.45120220471998	0	lncRNA	52275-1_{1..219}	hg19_lincRNAsTranscripts_TCONS_l2_00000585 range=chr1:149065284-149067535 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000585 range=chr1:149065284-149067535 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	149065284	149065502	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_24_P931964	3.3549619	P	3.152739	P	1.15046963006142	0	lncRNA	XR_111242	XR_111242	XR_111242	100128816	Hs.672404	LOC100128816	ACAH3104	NA	THC2481862	NA	"PREDICTED: Homo sapiens ACAH3104 (LOC100128816), miscRNA [XR_111242]"	chr12:3720609-3720550	hs|12p13.32	Agilent_HUMAN_G3V2	XR_111242	XR_111242	chr12	  3720550	  3720609	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14078_PI429285431	5.7798376	P	5.8257327	P	0.968688621119216	0	lncRNA	15723-1_{1..1088}	lnc-FAM22B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM22B-1:3	chr10	 81436224	 81437311	+	lnc-FAM22B-1	lnc-FAM22B-1:3	XLOC_008528	linc-C10orf57-5	NA	NA	NA	inter
LNCA_21_P0011672	0.92266834	A	0.9183106	A	1.00302512166806	0	lncRNA	TCONS_l2_00012274	NA	NA	NA	NA	XLOC_l2_006578	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006578), lincRNA [TCONS_l2_00012274]"	chr19:7983040-7983099	hs|19p13.2	Agilent_HUMAN_G3V2	TCONS_l2_00012274	TCONS_l2_00012274	chr19	  7983040	  7983099	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37306_PI429285431	0.9153163	A	0.92281216	A	0.994817740255489	0	lncRNA	38413-1_{1..1988}	n345748|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1297|NULL|-1.2912200|-0.2464305	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345748|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1297|NULL|-1.2912200|-0.2464305	chr19	 42060013	 42062000	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5228_PI429285431	10.792193	P	10.778397	P	1.0096085268129	0	lncRNA	5169-1_{1..239}	"transcript_id ""ENST00000559752.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559752.1"" | genecode_v17"	chr15	 70796246	 70796484	-	ENSG00000259473.1	ENST00000559752.1	RP11-96C21.1	RP11-96C21.1-001	NA	NA	NA	inter
LNCA_21_P0003578	0.9215623	A	0.91617835	A	1.00373884185903	0	lncRNA	TCONS_00007999	NA	NA	NA	NA	XLOC_003463	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003463), lincRNA [TCONS_00007999]"	chr4:14003005-14003064	hs|4p15.33	Agilent_HUMAN_G3V2	TCONS_00007999	TCONS_00007999	chr4	 14003005	 14003064	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20039_PI429285431	1.6315897	A	1.3645947	A	1.20329885567623	0	lncRNA	21690-1_{1..591}	lnc-TCTN3-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCTN3-1:11	chr10	 97667420	 97668010	-	lnc-TCTN3-1	lnc-TCTN3-1:11	ENSG00000226688.1	RP11-429G19.2	C10orf131	NA	chr10:97667722-97677620	inter
CUST_19387_PI429285431	1.2000704	A	1.3503655	A	0.901066132724626	0	lncRNA	21049-1_{1..693}	lnc-KLHL28-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL28-2:1	chr14	 45366215	 45366907	-	lnc-KLHL28-2	lnc-KLHL28-2:1	ENSG00000258633.1	RP11-857B24.1	C14orf28	NA	chr14:45366507-45376280	inter
CUST_24594_PI429285431	7.585325	P	7.624538	P	0.973185682076934	0	lncRNA	26143-1_{1..649}	lnc-RP11-93B14.6.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-93B14.6.1-2:2	chr20	 61297737	 61298385	-	lnc-RP11-93B14.6.1-2	lnc-RP11-93B14.6.1-2:2	ENSG00000232803.1	RP11-93B14.5	SLCO4A1	"hg19_refFlat_SLCO4A1:range=chr20:61287807-613032455'pad=0,hg19_refFlat_SLCO4A1:range=chr20:61287807-613032455'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90chr20:61287737-61303647"	NA	inner
CUST_31610_PI429285431	1.1910446	A	0.9309507	A	1.19755664687736	0	lncRNA	33366-1_{1..1049}	n338123|AL360140|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|511|NULL|-1.2233300|-0.3376769	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338123|AL360140|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|511|NULL|-1.2233300|-0.3376769	chr15	 90568186	 90569234	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_38037_PI429285431	0.89953685	A	0.8974204	A	1.00146808793784	0	lncRNA	39120-1_{1..3000}	n377610|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029989||0.5256780|-0.2246867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n377610|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029989||0.5256780|-0.2246867	chr6	  4076359	  4079358	+	NA	NA	NA	NA	C6orf201	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_FAM217A:range=chr6:4068930-40776485'pad=0,hg19_refFlat_FAM217A:range=chr6:4068930-40776485'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.89;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50chr6:4079440-4089955"	NA	inner
CUST_51545_PI429285431	1.2618513	A	0.89441615	A	1.29005730292761	0	lncRNA	55111-1_{1..2311}	hg19_lincRNAsTranscripts_TCONS_l2_00011085 range=chr17:9703978-9712361 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011085 range=chr17:9703978-9712361 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	  9703978	  9706288	-	NA	NA	NA	NA	DHRS7C	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-23.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60chr17:9693978-9694614"	NA	inter
CUST_21598_PI429285431	5.9333386	P	6.07829	P	0.904409843859807	0	lncRNA	23211-1_{1..545}	lnc-TRH-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRH-1:3	chr3	129838164	129838708	+	lnc-TRH-1	lnc-TRH-1:3	ENSG00000249846.1	RP11-77P16.4	NA	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30"	NA	inter
LNCA_19_P00320407	6.366663	P	6.5763555	P	0.864721520797046	0	lncRNA	ENST00000434020	XR_109976	XR_109976	NA	NA	LOC100506047	NA	ENST00000434020	THC2622442	NA	"PREDICTED: Homo sapiens hypothetical LOC100506047 (LOC100506047), miscRNA [XR_109976]"	chr2:43325028-43324969	hs|2p21	Agilent_HUMAN_G3V2	ENST00000434020	ENST00000434020	chr2	 43324969	 43325028	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18686_PI429285431	2.0295236	A	2.0655003	A	0.97537121396674	0	lncRNA	20386-1_{1..3000}	lnc-SPATA21-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPATA21-2:1	chr1	 16939833	 16942832	-	lnc-SPATA21-2	lnc-SPATA21-2:1	ENSG00000219481	NBPF1	NBPF1	NA	chr1:16929833-16939982	inner
CUST_25172_PI429285431	6.403042	P	6.743121	P	0.789998051470108	0	lncRNA	26703-6_{15001..15583}	lnc-ZNF862-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:2	chr7	149545900	149546482	+	lnc-ZNF862-1	lnc-ZNF862-1:2	ENSG00000197558.7	SSPO	ZNF862	NA	chr7:149535509-149541054	inner
CUST_46531_PI429285431	12.779946	P	12.863976	P	0.943418632852425	0	lncRNA	50720-1_{1..1670}	"gi|301897557|ref|NR_036446.1| Homo sapiens actin, alpha 2, smooth muscle, aorta pseudogene (LOC283693), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301897557|ref|NR_036446.1| Homo sapiens actin, alpha 2, smooth muscle, aorta pseudogene (LOC283693), non-coding RNA"	Chr15	 83394632	 83396301	-	283693	NR_036446.1	NA	NA	NA	"hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50"	NA	inter
CUST_267_PI429201921	0.9083681	A	0.9137037	A	0.996308474399183	0	lncRNA	194-2_{3001..6000}	TC01005980.hg.1	TCONS_l2_00002726-XLOC_l2_001220 // Broad TUCP // linc-ZNF648-1 chr1:-:182031811-182038388 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:182031811-182038388	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00002726-XLOC_l2_001220	linc-ZNF648-1	chr1	182031811	182038388	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46939_PI429285431	4.9626284	P	5.1516695	P	0.877188558722956	0	lncRNA	51048-1_{1..3000}	"gi|338827664|ref|NR_040071.1| Homo sapiens uncharacterized LOC100131096 (LOC100131096), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338827664|ref|NR_040071.1| Homo sapiens uncharacterized LOC100131096 (LOC100131096), non-coding RNA"	Chr17	 76103482	 76106481	-	100131096	NR_040071.1	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70"	NA	inter
CUST_6893_PI429285431	5.324368	P	5.3337574	P	0.993512896561275	0	lncRNA	6843-1_{1..448}	"transcript_id ""ENST00000441283.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441283.1"" | genecode_v17"	chr21	 44895805	 44896252	-	ENSG00000185186.4	ENST00000441283.1	LINC00313	LINC00313-007	NA	NA	NA	inter
LNCA_33_P3310751	6.866464	P	7.353485	P	0.713496867058174	0	lncRNA	XR_132823	XR_132823	XR_132823	100132249	NA	LOC100132249	uncharacterized LOC100132249	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100132249 (LOC100132249), partial miscRNA [XR_132823]"	chr9:45352157-45352098	hs|9p11.2	Agilent_HUMAN_G3V2	XR_132823	XR_132823	chr9	 45352098	 45352157	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15118_PI429285431	2.2444105	A	3.184698	P	0.521129019577914	0	lncRNA	16777-1_{1..439}	lnc-SLC25A26-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A26-1:1	chr3	 66025727	 66026165	+	lnc-SLC25A26-1	lnc-SLC25A26-1:1	XLOC_002690	linc-SLC25A26-1	MAGI1	NA	chr3:66015727-66024509	inter
LNCA_21_P0009266	0.9089036	A	0.89881337	A	1.00701852971493	0	lncRNA	THC2673276	NA	NA	NA	NA	XLOC_012288	NA	NA	THC2673276	NA	"BROAD Institute lincRNA (XLOC_012288), lincRNA [TCONS_00025471]"	chr17:066184932-066184991	hs|17q24.2	Agilent_HUMAN_G3V2	THC2673276	THC2673276	chr17	 66184932	 66184991	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2760_PI429285431	0.9250568	A	0.93059254	A	0.996170269621359	0	lncRNA	2743-1_{1..361}	"transcript_id ""ENST00000451755.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451755.1"" | genecode_v17"	chr7	 10000651	 10001011	+	ENSG00000235431.1	ENST00000451755.1	AC006373.1	AC006373.1-001	NA	NA	NA	inter
CUST_35015_PI429285431	6.967352	P	7.262665	P	0.814895517510856	0	lncRNA	36429-1_{1..859}	n341952|BC043551|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4433|NULL|-0.3722930|-0.2465968	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341952|BC043551|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4433|NULL|-0.3722930|-0.2465968	chr12	 65938017	 65938875	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47576_PI429285431	3.9109502	P	4.4462194	P	0.690029908401654	0	lncRNA	51580-1_{1..2148}	"gi|392583882|ref|NR_015378.3| Homo sapiens ZNF674 antisense RNA 1 (head to head) (ZNF674-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|392583882|ref|NR_015378.3| Homo sapiens ZNF674 antisense RNA 1 (head to head) (ZNF674-AS1), non-coding RNA"	ChrX	 46404925	 46407072	+	401588	NR_015378.3	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80"	NA	inter
CUST_12751_PI429285431	10.637553	P	10.48801	P	1.10921805133755	0	lncRNA	14376-1_{1..337}	lnc-PLEKHO1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLEKHO1-1:3	chr1	150152356	150152692	+	lnc-PLEKHO1-1	lnc-PLEKHO1-1:3	XLOC_000401	linc-CA14	NA	NA	NA	inter
CUST_17285_PI429285431	2.5159094	A	2.8868532	A	0.773276459753768	0	lncRNA	19003-1_{1..316}	lnc-NOP14-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOP14-3:1	chr4	  3510912	  3511227	-	lnc-NOP14-3	lnc-NOP14-3:1	XLOC_003860	linc-NOP14-3	LRPAP1	NA	chr4:3505324-3521161	inner
LNCA_21_P0012865	2.225328	A	2.3114808	A	0.942031495343605	0	lncRNA	TCONS_l2_00022656	NA	NA	NA	NA	XLOC_l2_011870	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011870), lincRNA [TCONS_l2_00022656]"	chr5:177236372-177236431	hs|5q35.3	Agilent_HUMAN_G3V2	TCONS_l2_00022656	TCONS_l2_00022656	chr5	177236372	177236431	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31110_PI429285431	4.5334916	P	4.996137	P	0.725654440597368	0	lncRNA	32903-1_{1..462}	n337399|DQ656053|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393166|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393166|0.6116380|-0.1179924	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337399|DQ656053|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393166|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393166|0.6116380|-0.1179924	chr22	 32439019	 32439480	+	NA	NA	NA	NA	SLC5A1	NA	chr22:32439019-32456008	inner
CUST_29558_PI429285431	2.0660203	A	2.6515307	A	0.666413531509984	0	lncRNA	31318-1_{1..576}	n333042|AF202879|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000073795|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000073795|3.0438100|-0.1310318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333042|AF202879|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000073795|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000073795|3.0438100|-0.1310318	chr1	208061163	208061738	-	NA	NA	NA	NA	CD34	NA	chr1:208059883-208080937	inner
CUST_35307_PI429285431	0.89304984	A	0.89576226	A	0.998121660017196	0	lncRNA	36710-1_{1..342}	n342329|AF344194|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4821|NULL|-0.5391880|-0.3516070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342329|AF344194|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4821|NULL|-0.5391880|-0.3516070	chr1	172721725	172722066	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70"	NA	inter
CUST_21004_PI429285431	1.0607675	A	1.3205941	A	0.835188296114785	0	lncRNA	22633-1_{1..331}	lnc-LIFR-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIFR-2:1	chr5	 38427194	 38427524	-	lnc-LIFR-2	lnc-LIFR-2:1	ENSG00000249491.1	EGFLAM-AS1	EGFLAM	"hg19_refFlat_EGFLAM:range=chr5:38258857-384640885'pad=0,hg19_refFlat_EGFLAM:range=chr5:38258857-384640885'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_EGFLAM:range=chr5:38403984-384640885'pad=0,hg19_refFlat_EGFLAM:range=chr5:38403984-384640885'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40chr5:38417194-38437478"	NA	inner
CUST_12349_PI429285431	1.7985857	A	0.8974715	A	1.86750771104984	0	lncRNA	13961-1_{1..246}	lnc-CBLN4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLN4-3:1	chr20	 54242560	 54242805	-	lnc-CBLN4-3	lnc-CBLN4-3:1	XLOC_013805	linc-CYP24A1-4	NA	NA	NA	inter
CUST_37144_PI429285431	0.9176632	A	0.9023971	A	1.01063783787295	0	lncRNA	38263-1_{1..907}	n345581|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1130|NULL|-1.6464700|-0.2876217	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345581|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1130|NULL|-1.6464700|-0.2876217	chr3	  5053036	  5053942	-	NA	NA	NA	NA	NA	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80"	NA	inter
LNCA_21_P0003458	0.90766233	A	0.89711297	A	1.00733905899024	0	lncRNA	ENST00000512517	NA	AK057434	NA	Hs.586147	XLOC_003927	NA	ENST00000512517	THC2625043	NA	"BROAD Institute lincRNA (XLOC_003927), lincRNA [TCONS_00007745]"	chr4:38422700-38422641	hs|4p14	Agilent_HUMAN_G3V2	ENST00000512517	ENST00000512517	chr4	 38422641	 38422700	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009200	0.9079208	A	2.2541676	A	0.393313933208636	0	lncRNA	AK001871	NA	AK001871	NA	Hs.552711	XLOC_012524	NA	NA	THC2608529	NA	"BROAD Institute lincRNA (XLOC_012524), lincRNA [TCONS_00025244]"	chr17:53403183-53403124	hs|17q22	Agilent_HUMAN_G3V2	AK001871	AK001871	chr17	 53403124	 53403183	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22524_PI429285431	0.91992533	A	0.90046144	A	1.01358275926821	0	lncRNA	24112-1_{1..717}	lnc-MAT2B-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAT2B-3:4	chr5	164598384	164599100	+	lnc-MAT2B-3	lnc-MAT2B-3:4	ENSG00000241956.5	CTC-340A15.2	NA	NA	NA	inter
CUST_51284_PI429285431	1.6347983	A	1.7813907	A	0.903381703634219	0	lncRNA	54890-1_{1..545}	hg19_lincRNAsTranscripts_TCONS_l2_00008533 range=chr15:31115868-31126596 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008533 range=chr15:31115868-31126596 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 31115868	 31116412	+	NA	NA	NA	NA	FAN1	NA	chr15:31117044-31136596	inter
CUST_35896_PI429285431	0.9012367	A	0.91091126	A	0.993316540344498	0	lncRNA	37277-4_{9001..12000}	n344552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_100|NULL|-1.2931500|-0.3004446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n344552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_100|NULL|-1.2931500|-0.3004446	chr15	 25250369	 25253368	+	NA	NA	NA	NA	SNRPN	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr15:25231369-25375009"	NA	inter
CUST_15057_PI429285431	0.8922434	A	1.4634163	A	0.673069365707174	0	lncRNA	16720-1_{1..339}	lnc-ZNF366-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF366-4:1	chr5	 72067442	 72067780	-	lnc-ZNF366-4	lnc-ZNF366-4:1	XLOC_004877	linc-ZNF366-2	TNPO1	NA	chr5:72057442-72077544	inter
CUST_35528_PI429285431	1.1338847	A	1.90215	A	0.587123008485909	0	lncRNA	36939-1_{1..286}	n342640|AF009275|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5142|NULL|-0.9530120|-0.2204832	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342640|AF009275|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5142|NULL|-0.9530120|-0.2204832	chr5	  9184724	  9185009	+	NA	NA	NA	NA	SEMA5A	NA	chr5:9174724-9195010	inner
CUST_4174_PI429285431	1.1863236	A	1.1483123	A	1.02669758736218	0	lncRNA	4132-1_{1..2178}	"transcript_id ""ENST00000418574.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418574.3"" | genecode_v17"	chr12	 16846734	 16848911	+	ENSG00000255871.2	ENST00000418574.3	RP11-69C13.1	RP11-69C13.1-001	NA	NA	NA	inter
CUST_5907_PI429285431	2.7726226	A	2.569547	A	1.15114981221554	0	lncRNA	5838-1_{1..618}	"transcript_id ""ENST00000576602.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000576602.1"" | genecode_v17"	chr17	 54946308	 54946925	+	ENSG00000262951.1	ENST00000576602.1	RP11-670E13.2	RP11-670E13.2-001	DGKE	NA	chr17:54936308-54946036	inter
CUST_10264_PI429285431	5.2281427	P	5.564658	P	0.791951892021039	0	lncRNA	11790-1_{1..1149}	lnc-FAM65C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM65C-2:1	chr20	 49010816	 49011964	-	lnc-FAM65C-2	lnc-FAM65C-2:1	XLOC_013792	linc-TMEM189-2	NA	NA	NA	inter
CUST_28501_PI429285431	6.3130913	P	6.6777854	P	0.776633530042631	0	lncRNA	30169-1_{1..634}	n325845|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051080|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051080|-0.8178230|-0.1777132	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325845|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051080|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051080|-0.8178230|-0.1777132	chr10	134175119	134175752	-	NA	NA	NA	NA	LRRC27	NA	chr10:134165119-134191685	inter
CUST_9302_PI429285431	0.9095712	A	0.9145292	A	0.996569274711252	0	lncRNA	10809-1_{1..816}	lnc-FAM182B-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM182B-6:4	chr20	 26174934	 26175749	-	lnc-FAM182B-6	lnc-FAM182B-6:4	XLOC_013715	linc-ZNF337-9	NA	NA	NA	inter
CUST_37318_PI429285431	6.047498	P	6.092043	P	0.969595561674927	0	lncRNA	38425-1_{1..327}	n345762|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1311|NULL|-1.6711600|-0.1662894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345762|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1311|NULL|-1.6711600|-0.1662894	chr1	145377106	145377432	-	NA	NA	NA	NA	NBPF10	NA	chr1:145367106-145368684	inter
CUST_44626_PI429285431	7.9655547	P	7.702217	P	1.20025229951464	0	lncRNA	49192-1_{1..1064}	"gi|229577413|ref|NR_024356.2| Homo sapiens fibrillarin-like 1 (FBLL1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|229577413|ref|NR_024356.2| Homo sapiens fibrillarin-like 1 (FBLL1), non-coding RNA"	Chr5	167956582	167957645	+	345630	NR_024356.2	NA	NA	NA	NA	NA	inter
CUST_46351_PI429285431	11.399407	P	11.193305	P	1.1535671605431	0	lncRNA	50575-1_{1..2808}	"gi|349585159|ref|NR_045209.1| Homo sapiens dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) (DLST), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|349585159|ref|NR_045209.1| Homo sapiens dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) (DLST), transcript variant 4, non-coding RNA"	Chr14	 75348594	 75351401	+	1743	NR_045209.1	NA	NA	NA	NA	NA	inter
CUST_37012_PI429285431	0.90865535	A	0.906043	A	1.00181238342226	0	lncRNA	38152-1_{1..1629}	n345469|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1018|NULL|-1.3167900|-0.3024483	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345469|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1018|NULL|-1.3167900|-0.3024483	chr1	163265701	163267329	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_23405_PI429285431	2.796828	A	2.4882517	A	1.23848491811608	0	lncRNA	24973-1_{1..527}	lnc-C9orf103-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C9orf103-2:1	chr9	 85894072	 85894598	+	lnc-C9orf103-2	lnc-C9orf103-2:1	ENSG00000237529.1	RP11-439K3.3	FRMD3	NA	chr9:85884072-85904414	inner
LNCA_21_P0007017	0.91924065	A	0.90796894	A	1.00784355477396	0	lncRNA	TCONS_00018600	NA	NA	NA	NA	XLOC_008944	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008944), lincRNA [TCONS_00018600]"	chr10:110209851-110209792	hs|10q25.1	Agilent_HUMAN_G3V2	TCONS_00018600	TCONS_00018600	chr10	110209792	110209851	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008641	0.9196894	A	0.9083866	A	1.00786527398201	0	lncRNA	TCONS_00023960	NA	NA	NA	NA	XLOC_011281	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011281), lincRNA [TCONS_00023960]"	chr15:63383518-63397318	hs|15q22.2	Agilent_HUMAN_G3V2	TCONS_00023960	TCONS_00023960	chr15	 63383518	 63397318	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27062_PI429285431	1.2401334	A	0.90116817	A	1.26484905820415	0	lncRNA	28596-1_{1..3000}	n324173|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280498|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280498|-0.9291040|-0.3010053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324173|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280498|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280498|-0.9291040|-0.3010053	chr8	 49665513	 49668512	+	NA	NA	NA	NA	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70"	NA	inter
LNCA_21_P0007852	0.9205613	A	1.216987	A	0.81426725953506	0	lncRNA	TCONS_00021221	NA	NA	NA	NA	XLOC_009911	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009911), lincRNA [TCONS_00021221]"	chr12:121342566-121345507	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00021221	TCONS_00021221	chr12	121342566	121345507	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5547_PI429285431	1.0405046	A	1.3281647	A	0.819229686234223	0	lncRNA	5477-1_{1..630}	"transcript_id ""ENST00000568286.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568286.1"" | genecode_v17"	chr16	 52271994	 52272623	+	ENSG00000260478.1	ENST00000568286.1	RP11-142G1.1	RP11-142G1.1-001	NA	NA	NA	inter
CUST_49818_PI429285431	4.37712	P	4.4387174	P	0.95820257793832	0	lncRNA	53576-1_{1..895}	hg19_lincRNAsTranscripts_TCONS_l2_00026623 range=chr7:64538528-64541655 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026623 range=chr7:64538528-64541655 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 64538528	 64539422	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_SUMF2:range=chr7:56131948-561473055'pad=0,hg19_refFlat_SUMF2:range=chr7:56131948-561473055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20;hg19_refFlat_SUMF2:range=chr7:56131948-561475645'pad=0,hg19_refFlat_SUMF2:range=chr7:56131948-561475645'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00"	NA	inter
CUST_34185_PI429285431	1.6348574	A	0.903633	A	1.66004735856353	0	lncRNA	35701-1_{1..1096}	n341034|AK056995|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3500|NULL|-1.3449400|-0.5046168	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341034|AK056995|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3500|NULL|-1.3449400|-0.5046168	chr11	 58394907	 58396002	+	NA	NA	NA	NA	CNTF	NA	chr11:58390146-58393206	inter
LNCA_21_P0008132	0.92322505	A	1.0806721	A	0.896610282685415	0	lncRNA	TCONS_00021946	NA	NA	NA	NA	XLOC_010540	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010540), lincRNA [TCONS_00021946]"	chr13:27752404-27752345	hs|13q12.13	Agilent_HUMAN_G3V2	TCONS_00021946	TCONS_00021946	chr13	 27752345	 27752404	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28370_PI429285431	0.9267282	A	0.92957205	A	0.99803073494237	0	lncRNA	30021-1_{1..342}	n325683|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045358|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045358|-1.0289000|-0.4922283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325683|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045358|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045358|-1.0289000|-0.4922283	chr13	 77747855	 77748196	-	NA	NA	NA	NA	MYCBP2	NA	chr13:77737855-77759650	inner
CUST_39300_PI429285431	7.7020965	P	7.4826035	P	1.16432434115892	0	lncRNA	40269-1_{1..2489}	n386309|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gsh.1||6.9183300|-0.0852249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386309|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gsh.1||6.9183300|-0.0852249	chr22	 20383730	 20386218	-	NA	NA	NA	NA	TMEM191B	NA	chr22:20373730-20380440	inter
LNCA_21_P0010064	2.0739172	A	1.1070344	A	1.95461273979068	0	lncRNA	TCONS_00028451	NA	NA	NA	NA	XLOC_013811	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013811), lincRNA [TCONS_00028451]"	chr20:55734435-55734376	hs|20q13.31	Agilent_HUMAN_G3V2	TCONS_00028451	TCONS_00028451	chr20	 55734376	 55734435	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2712_PI429285431	0.9963894	A	0.8936974	A	1.07377520759691	0	lncRNA	2697-1_{1..1420}	"transcript_id ""ENST00000414364.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414364.1"" | genecode_v17"	chr6	168394852	168396271	-	ENSG00000229921.2	ENST00000414364.1	KIF25-AS1	KIF25-AS1-001	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40"	NA	inter
CUST_10302_PI429285431	1.830155	A	1.9261057	A	0.935655470649814	0	lncRNA	11829-1_{1..364}	lnc-ANP32D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANP32D-1:1	chr12	 48853239	 48853602	+	lnc-ANP32D-1	lnc-ANP32D-1:1	XLOC_009736	linc-ANP32D-1	NA	NA	NA	inter
CUST_35551_PI429285431	1.5048654	A	1.7148747	A	0.864531658286465	0	lncRNA	36964-2_{3001..4741}	n342676|BX640993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5178|NULL|1.3095400|-0.3088742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342676|BX640993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5178|NULL|1.3095400|-0.3088742	chr17	 21922350	 21924090	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26391_PI429285431	3.8104603	P	2.750172	A	2.08534820421282	0	lncRNA	27897-1_{1..315}	lnc-GPR6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR6-1:1	chr6	110552655	110552969	+	lnc-GPR6-1	lnc-GPR6-1:1	ENSG00000244179.1	RP11-315C6.3	CDC40	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80chr6:110542655-110553423"	NA	inner
CUST_12004_PI429285431	0.9211968	A	1.1736866	A	0.83944644956178	0	lncRNA	13585-1_{1..2933}	lnc-C22orf26-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C22orf26-2:5	chr22	 46439820	 46442752	-	lnc-C22orf26-2	lnc-C22orf26-2:5	XLOC_014404	linc-WNT7B-2	C22orf26	NA	chr22:46446339-46450024	inter
CUST_15657_PI429285431	2.564747	A	2.64972	A	0.942802180271305	0	lncRNA	17350-1_{1..669}	lnc-ALDH1B1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALDH1B1-1:1	chr9	 38376297	 38376965	+	lnc-ALDH1B1-1	lnc-ALDH1B1-1:1	XLOC_007350	linc-ALDH1B1-1	NA	NA	NA	inter
CUST_191_PI429201921	2.8304906	A	2.9614856	A	0.913201414921437	0	lncRNA	155-2_{3001..4954}	TC19002147.hg.1	TCONS_00026792-XLOC_013083 // Rinn lincRNAs // linc-ZNF526-1 chr19:+:42656720-42661675 // chr19 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr19:+:42656720-42661675	NA	Affy_HUMAN_HTA2.0	TCONS_00026792-XLOC_013083	linc-ZNF526-1	chr19	 42656720	 42661675	+	NA	NA	NA	NA	NECAP2	NA	chr1:16777443-16786585	Unknown
LNCA_24_P194819	3.0906444	P	3.058653	P	1.02242243586439	0	lncRNA	XR_108978	NA	XR_108978	   138652	Hs.648184	PRSS47	"protease, serine, 47"	NA	THC2776688	GO:0005622|GO:0004252|GO:0006508|GO:0008233|GO:0005576|GO:0005097	"PREDICTED: Homo sapiens protease, serine, 47 (PRSS47), miscRNA [XR_108978]"	chr9:94949218-94949159	hs|9q22.31	Agilent_HUMAN_G3V2	XR_108978	XR_108978	chr9	 94949159	 94949218	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49887_PI429285431	0.9012549	A	0.9001027	A	1.00079896318262	0	lncRNA	53638-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00026700 range=chr7:76684553-76702721 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026700 range=chr7:76684553-76702721 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 76690553	 76693552	-	NA	NA	NA	NA	LOC100505767	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_NSL1:range=chr1:212912886-2129651055'pad=0,hg19_refFlat_NSL1:range=chr1:212912886-2129651055'pad=0 3'pad=0 strand=- repeatMasking=none,-58.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.41;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10chr7:76682095-76689829"	NA	inter
CUST_33073_PI429285431	2.6423023	A	2.7934358	A	0.900542644144847	0	lncRNA	34680-1_{1..1252}	n339761|L40949|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2208|NULL|4.1888800|-0.0848214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339761|L40949|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2208|NULL|4.1888800|-0.0848214	chr20	 62711487	 62712738	+	NA	NA	NA	NA	OPRL1	NA	chr20:62711471-62731996	inner
LNCA_21_P0008555	0.92770785	A	0.9117825	A	1.01109976172088	0	lncRNA	AK056686	NA	AK056686	NA	Hs.375762	XLOC_011237	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011237), lincRNA [TCONS_00023224]"	chr15:45771743-45771802	hs|15q21.1	Agilent_HUMAN_G3V2	AK056686	AK056686	chr15	 45771743	 45771802	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48080_PI429285431	0.90405405	A	0.9035723	A	1.00033397941294	0	lncRNA	51956-1_{1..666}	"gi|397138309|ref|XR_159438.1| PREDICTED: Homo sapiens uncharacterized LOC100996904 (LOC100996904), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138309|ref|XR_159438.1| PREDICTED: Homo sapiens uncharacterized LOC100996904 (LOC100996904), misc_RNA"	NA	NA	NA	NA	NA	XR_159438.1	NA	NA	NA	NA	NA	Unknown
CUST_44329_PI429285431	4.442664	P	2.1675365	A	4.84040411481435	0	lncRNA	48958-3_{6001..6922}	"gi|223468604|ref|NR_026787.1| Homo sapiens leishmanolysin-like (metallopeptidase M8 family) (LMLN), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|223468604|ref|NR_026787.1| Homo sapiens leishmanolysin-like (metallopeptidase M8 family) (LMLN), transcript variant 4, non-coding RNA"	Chr3	197693071	197693992	+	89782	NR_026787.1	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00"	NA	inter
CUST_50207_PI429285431	1.0947022	A	0.91687214	A	1.13118120928116	0	lncRNA	53932-1_{1..1166}	hg19_lincRNAsTranscripts_TCONS_l2_00029295 range=chr9:44125009-44129969 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029295 range=chr9:44125009-44129969 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 44125009	 44126174	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23619_PI429285431	8.388961	P	8.281188	P	1.077563583098	0	lncRNA	25186-1_{1..2381}	lnc-DHX38-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DHX38-5:1	chr16	 72823142	 72825522	+	lnc-DHX38-5	lnc-DHX38-5:1	ENSG00000259901.1	RP5-991G20.4	ZFHX3	NA	chr16:72813142-72835522	inner
CUST_40536_PI429285431	4.219616	P	4.654358	P	0.739826047346398	0	lncRNA	41294-1_{1..1791}	n409645|NR_034031|lncRNA|Homosapiens||RefGeneNoncode|NR_034031||3.0376700|-0.1619021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409645|NR_034031|lncRNA|Homosapiens||RefGeneNoncode|NR_034031||3.0376700|-0.1619021	chrX	  3735575	  3737365	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14903_PI429285431	1.5647337	A	1.7967694	A	0.851432638485922	0	lncRNA	16566-1_{1..400}	lnc-PIK3R1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIK3R1-6:1	chr5	 67976762	 67977161	+	lnc-PIK3R1-6	lnc-PIK3R1-6:1	XLOC_004416	linc-SLC30A5-2	NA	NA	NA	inter
CUST_18470_PI429285431	1.9891996	A	2.4659436	A	0.71859758899602	0	lncRNA	20191-1_{1..523}	lnc-OR4F16-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-OR4F16-6:2	chr1	   745447	   745969	-	lnc-OR4F16-6	lnc-OR4F16-6:2	ENSG00000230092	RP11-206L10.8	NA	NA	NA	inter
CUST_51098_PI429285431	6.7171745	P	6.446171	P	1.20664684706072	0	lncRNA	54735-2_{3001..4048}	hg19_lincRNAsTranscripts_TCONS_l2_00006891 range=chr13:64410945-64415515 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006891 range=chr13:64410945-64415515 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 64413945	 64414992	+	NA	NA	NA	NA	LOC100507505	"hg19_refFlat_OR1J2:range=chr9:125273081-1252740225'pad=0,hg19_refFlat_OR1J2:range=chr9:125273081-1252740225'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_OR1E2:range=chr17:3336164-33371355'pad=0,hg19_refFlat_OR1E2:range=chr17:3336164-33371355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_OR1J4:range=chr9:125281420-1252823615'pad=0,hg19_refFlat_OR1J4:range=chr9:125281420-1252823615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_OR1E1:range=chr17:3300760-33017045'pad=0,hg19_refFlat_OR1E1:range=chr17:3300760-33017045'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80chr13:64400945-64407126"	NA	inter
CUST_31323_PI429285431	2.738861	A	2.7767856	A	0.974055174548257	0	lncRNA	33106-1_{1..1425}	n337789|BC034806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|171|NULL|-1.1225600|-0.3449678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n337789|BC034806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|171|NULL|-1.1225600|-0.3449678	chr15	 59060270	 59061694	-	NA	NA	NA	NA	FAM63B	NA	chr15:59050270-59073173	inter
CUST_44041_PI429285431	0.9107276	A	0.9211922	A	0.992772735213275	0	lncRNA	48721-1_{1..3000}	"gi|166235160|ref|NR_004862.1| Homo sapiens tRNA-yW synthesizing protein 5 (TYW5), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|166235160|ref|NR_004862.1| Homo sapiens tRNA-yW synthesizing protein 5 (TYW5), transcript variant 2, non-coding RNA"	Chr2	200793634	200796633	-	129450	NR_004862.1	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70"	NA	inter
CUST_33215_PI429285431	2.1596045	A	2.0346	A	1.09051113414118	0	lncRNA	34805-2_{3001..3574}	n339912|AK128732|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2361|NULL|0.4465520|-0.3595681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339912|AK128732|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2361|NULL|0.4465520|-0.3595681	chr18	 67330072	 67330645	+	NA	NA	NA	NA	DOK6	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr18:67317072-67340649"	NA	inner
CUST_50708_PI429285431	8.063711	P	7.922604	P	1.10275094748802	0	lncRNA	54379-1_{1..281}	hg19_lincRNAsTranscripts_TCONS_l2_00003122 range=chr10:81588004-81598612 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003122 range=chr10:81588004-81598612 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 81588004	 81588284	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3408_PI429285431	0.89098907	A	0.89462507	A	0.997482890098672	0	lncRNA	3380-1_{1..743}	"transcript_id ""ENST00000591605.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591605.1"" | genecode_v17"	chr9	 42470244	 42470986	+	ENSG00000223839.3	ENST00000591605.1	FAM95B1	FAM95B1-013	CBWD7	NA	chr9:42478004-42484045	inter
CUST_38261_PI429285431	4.896792	P	4.9889274	P	0.938133146576513	0	lncRNA	39318-1_{1..3000}	n381805|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qgw.2||4.8556400|-0.2066500	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n381805|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qgw.2||4.8556400|-0.2066500	chr11	133766329	133769328	-	NA	NA	NA	NA	LOC646543	NA	chr11:133778459-133781635	inter
CUST_28855_PI429285431	1.153893	A	1.425138	A	0.828604178099965	0	lncRNA	30563-1_{1..2810}	n326270|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099140|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099140|-1.0212100|-0.2936903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326270|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099140|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099140|-1.0212100|-0.2936903	chr1	201056016	201058825	+	NA	NA	NA	NA	CACNA1S	"hg19_refFlat_CACNA1S:range=chr1:201008959-2010814675'pad=0,hg19_refFlat_CACNA1S:range=chr1:201008959-2010814675'pad=0 3'pad=0 strand=- repeatMasking=none,-99.00chr1:201046016-201072976"	NA	inner
CUST_24490_PI429285431	5.38591	P	5.815115	P	0.742670922879874	0	lncRNA	26042-1_{1..818}	lnc-BACH1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BACH1-2:4	chr21	 31135897	 31136714	+	lnc-BACH1-2	lnc-BACH1-2:4	ENSG00000174680.5	GRIK1-AS1	GRIK1	NA	chr21:31125897-31146321	inner
CUST_41734_PI429285431	0.9042453	A	0.90955067	A	0.99632935110554	0	lncRNA	43265-1_{1..76}	ENST00000577276 ncrna:miRNA supercontig:GRCh37:GL000219.1:47191:47266:-1 gene:ENSG00000263936 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577276 ncrna:miRNA supercontig:GRCh37:GL000219.1:47191:47266:-1 gene:ENSG00000263936 gene_biotype:miRNA transcript_biotype:miRNA	chrGL000219.1	    47191	    47266	-	ENSG00000263936	ENST00000577276	NA	NA	NA	NA	NA	Unknown
CUST_18591_PI429285431	0.93039626	A	0.9121974	A	1.01269438676357	0	lncRNA	20298-1_{1..457}	lnc-RP11-262H14.4.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-262H14.4.1-1:3	chr9	 66470399	 66470855	+	lnc-RP11-262H14.4.1-1	lnc-RP11-262H14.4.1-1:3	ENSG00000238113	RP11-262H14.1	NA	NA	NA	inter
CUST_7117_PI429285431	3.7953634	P	3.7009602	P	1.0676236725497	0	lncRNA	7053-1_{1..250}	"transcript_id ""ENST00000416873.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416873.1"" | genecode_v17"	chrX	134257167	134257416	-	ENSG00000223809.1	ENST00000416873.1	RP11-85L21.6	RP11-85L21.6-001	NA	NA	NA	inter
CUST_7493_PI429285431	1.4139102	A	2.2122455	A	0.575012291244145	0	lncRNA	9132-1_{1..3000}	lnc-TRMT61B-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TRMT61B-5:2	chr2	 28617415	 28620414	-	lnc-TRMT61B-5	lnc-TRMT61B-5:2	ENSG00000229951	AC104695.3	FOSL2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90chr2:28615779-28627539"	NA	inner
CUST_35813_PI429285431	7.0985026	P	7.3699813	P	0.828469964626108	0	lncRNA	37219-1_{1..2492}	n344489|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_37|NULL|-1.4128900|-0.2271697	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344489|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_37|NULL|-1.4128900|-0.2271697	chr2	111953947	111956438	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00801885	7.702773	P	8.240167	P	0.689014380970927	0	lncRNA	XR_132736	XR_132736	XR_132736	NA	Hs.729493	LOC440132	hCG1815504	ENST00000440633	THC2652493	NA	"PREDICTED: Homo sapiens hCG1815504 (LOC440132), miscRNA [XR_132736]"	chr13:31457417-31457476	hs|13q12.3	Agilent_HUMAN_G3V2	XR_132736	XR_132736	chr13	 31457417	 31457476	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003141	0.9224698	A	0.9180351	A	1.00307862907615	0	lncRNA	TCONS_00006570	NA	NA	NA	NA	XLOC_003197	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003197), lincRNA [TCONS_00006570]"	chr3:105597144-105592602	hs|3q13.11	Agilent_HUMAN_G3V2	TCONS_00006570	TCONS_00006570	chr3	105592602	105597144	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34815_PI429285431	2.1252584	A	1.3710765	A	1.68667486891807	0	lncRNA	36248-1_{1..764}	n341722|AF116613|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4195|NULL|-1.2470000|-0.4435168	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341722|AF116613|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4195|NULL|-1.2470000|-0.4435168	chr9	 94793429	 94794192	+	NA	NA	NA	NA	SPTLC1	NA	chr9:94793427-94804193	inner
CUST_16052_PI429285431	0.9034556	A	0.90389955	A	0.999692324650961	0	lncRNA	17752-1_{1..317}	lnc-UGT8-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UGT8-3:1	chr4	116191090	116191406	+	lnc-UGT8-3	lnc-UGT8-3:1	XLOC_003656	linc-NDST3-5	NA	NA	NA	inter
CUST_36771_PI429285431	2.374477	A	2.288092	A	1.06170649991216	0	lncRNA	37943-1_{1..2519}	n345250|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_799|NULL|-1.3534000|-0.3061614	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345250|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_799|NULL|-1.3534000|-0.3061614	chr14	 29253566	 29256084	-	NA	NA	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30"	NA	inter
CUST_17138_PI429285431	5.9536767	P	6.223209	P	0.829588442302354	0	lncRNA	18847-1_{1..1944}	lnc-ABLIM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABLIM2-1:1	chr4	  8165883	  8167826	-	lnc-ABLIM2-1	lnc-ABLIM2-1:1	XLOC_003874	linc-ABLIM2	ABLIM2	NA	chr4:8155883-8160559	inter
CUST_50220_PI429285431	3.437191	P	3.5779488	P	0.907042590686198	0	lncRNA	53944-1_{1..2144}	hg19_lincRNAsTranscripts_TCONS_l2_00029320 range=chr9:67254267-67290779 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029320 range=chr9:67254267-67290779 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 67254267	 67256410	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60"	NA	inter
CUST_44630_PI429285431	1.1050631	A	1.5852408	A	0.716889317696463	0	lncRNA	49196-1_{1..967}	"gi|222080081|ref|NR_026683.1| Homo sapiens uncharacterized LOC100268168 (LOC100268168), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|222080081|ref|NR_026683.1| Homo sapiens uncharacterized LOC100268168 (LOC100268168), transcript variant 2, non-coding RNA"	Chr5	172381785	172382751	-	100268168	NR_026683.1	NA	NA	NA	NA	NA	inter
CUST_15839_PI429285431	0.9066615	A	1.2828048	A	0.770494572879432	0	lncRNA	17530-1_{1..343}	lnc-FAM19A5-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM19A5-2:4	chr22	 48864133	 48864475	+	lnc-FAM19A5-2	lnc-FAM19A5-2:4	XLOC_014279	linc-FAM19A5-1	NA	NA	NA	inter
CUST_43506_PI429285431	0.90236384	A	0.9060933	A	0.997418273718418	0	lncRNA	48295-2_{3001..3412}	"gi|218749809|ref|NR_024604.1| Homo sapiens chloride channel accessory 3, pseudogene (CLCA3P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|218749809|ref|NR_024604.1| Homo sapiens chloride channel accessory 3, pseudogene (CLCA3P), non-coding RNA"	Chr1	 87102959	 87103370	+	9629	NR_024604.1	NA	NA	NA	NA	NA	inter
CUST_51239_PI429285431	4.4283037	P	5.96444	P	0.344807652883624	0	lncRNA	54852-1_{1..2008}	hg19_lincRNAsTranscripts_TCONS_l2_00008923 range=chr15:23108342-23155409 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008923 range=chr15:23108342-23155409 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 23108342	 23110349	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37054_PI429285431	0.915722	A	0.9133076	A	1.0016749356932	0	lncRNA	38188-1_{1..581}	n345505|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1054|NULL|-1.5503800|-0.4760024	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345505|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1054|NULL|-1.5503800|-0.4760024	chr2	180729066	180729646	+	NA	NA	NA	NA	ZNF385B	NA	chr2:180719066-180726232	inter
CUST_49904_PI429285431	0.8936309	A	1.2884576	A	0.760580733921379	0	lncRNA	53653-1_{1..2146}	hg19_lincRNAsTranscripts_TCONS_l2_00026087 range=chr7:89748938-89755266 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026087 range=chr7:89748938-89755266 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 89748938	 89751083	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12847_PI429285431	0.89817667	A	1.1316171	A	0.850604015079136	0	lncRNA	14473-2_{3001..4781}	lnc-CRIPAK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRIPAK-1:1	chr4	  1552531	  1554311	+	lnc-CRIPAK-1	lnc-CRIPAK-1:1	XLOC_003422	linc-TACC3	NA	NA	NA	inter
CUST_8340_PI429285431	5.6888065	P	5.726261	P	0.974372620672514	0	lncRNA	9921-2_{3001..3962}	lnc-HAS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HAS1-1:1	chr19	 52198887	 52199848	-	lnc-HAS1-1	lnc-HAS1-1:1	ENSG00000251384	AC018755.2	NA	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40"	NA	inter
CUST_871_PI429285431	0.916639	A	0.90353614	A	1.0091235788838	0	lncRNA	865-1_{1..3000}	"transcript_id ""ENST00000418539.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000418539.1"" | genecode_v17"	chr2	 47558199	 47561198	+	ENSG00000236824.1	ENST00000418539.1	BCYRN1	BCYRN1-001	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.20;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.01;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-94.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50"	NA	inter
CUST_7843_PI429285431	0.92444867	A	1.1958894	A	0.82849176924706	0	lncRNA	9467-1_{1..2170}	lnc-ZNF135-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF135-1:1	chr19	 58638767	 58640936	+	lnc-ZNF135-1	lnc-ZNF135-1:1	ENSG00000246463	ENST00000500161	ZSCAN18	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF700:range=chr19:12036026-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12036026-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.90;hg19_refFlat_ZNF329:range=chr19:58639245-586408705'pad=0,hg19_refFlat_ZNF329:range=chr19:58639245-586408705'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60chr19:58628767-58629793"	NA	inner
LNCA_21_P0003949	2.5823019	A	2.879655	A	0.813743996633273	0	lncRNA	ENST00000515086	NA	NA	NA	NA	XLOC_004257	NA	ENST00000515086	NA	NA	"BROAD Institute lincRNA (XLOC_004257), lincRNA [TCONS_00009329]"	chr5:2967683-2967742	hs|5p15.33	Agilent_HUMAN_G3V2	ENST00000515086	ENST00000515086	chr5	  2967683	  2967742	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4496_PI429285431	1.4127095	A	2.7112694	A	0.406531796259294	0	lncRNA	4445-1_{1..242}	"transcript_id ""ENST00000535022.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535022.1"" | genecode_v17"	chr12	127630186	127630427	-	ENSG00000256001.1	ENST00000535022.1	RP11-575F12.2	RP11-575F12.2-002	NA	NA	NA	inter
LNCA_21_P0007012	0.9100083	A	0.90019774	A	1.00682333560365	0	lncRNA	TCONS_00018573	NA	NA	NA	NA	XLOC_008903	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008903), lincRNA [TCONS_00018573]"	chr10:92793915-92793856	hs|10q23.31	Agilent_HUMAN_G3V2	TCONS_00018573	TCONS_00018573	chr10	 92793856	 92793915	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8781_PI429285431	5.943458	P	5.979697	P	0.975193895402429	0	lncRNA	10322-1_{1..3000}	lnc-NKPD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NKPD1-1:1	chr19	 45639307	 45642306	-	lnc-NKPD1-1	lnc-NKPD1-1:1	ENSG00000250044	AC011489.1	LRRC68	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50chr19:45629307-45650543"	NA	inner
CUST_16117_PI429285431	7.087922	P	6.9447412	P	1.10433723514941	0	lncRNA	17823-1_{1..266}	lnc-ALOX12B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALOX12B-1:1	chr17	  7967829	  7968094	-	lnc-ALOX12B-1	lnc-ALOX12B-1:1	XLOC_012383	linc-TRAPPC1	ALOX12B	NA	chr17:7974704-7978061	inter
LNCA_21_P0003169	0.9091515	A	0.89918625	A	1.00693129594691	0	lncRNA	TCONS_00006647	NA	NA	NA	NA	XLOC_003240	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003240), lincRNA [TCONS_00006647]"	chr3:127218044-127217985	hs|3q21.3	Agilent_HUMAN_G3V2	TCONS_00006647	TCONS_00006647	chr3	127217985	127218044	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14301_PI429285431	1.1501787	A	0.8968699	A	1.1919376741998	0	lncRNA	15961-1_{1..2229}	lnc-KLF15-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF15-3:1	chr3	125993797	125996025	-	lnc-KLF15-3	lnc-KLF15-3:1	XLOC_003234	linc-ALDH1L1-1	LOC644662	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80chr3:125985645-126004041"	NA	inter
CUST_14862_PI429285431	1.3432403	A	0.8933357	A	1.36594992863369	0	lncRNA	16525-1_{1..419}	lnc-PDCD6IP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDCD6IP-1:1	chr3	 34309814	 34310232	+	lnc-PDCD6IP-1	lnc-PDCD6IP-1:1	XLOC_002613	linc-ARPP21-2	NA	NA	NA	inter
LNCA_21_P0008791	10.518743	P	10.388117	P	1.09476862941904	0	lncRNA	THC2684450	NA	NA	NA	NA	XLOC_011592	NA	NA	THC2684450	NA	"BROAD Institute lincRNA (XLOC_011592), lincRNA [TCONS_00023807]"	chr15:095799117-095799058	hs|15q26.2	Agilent_HUMAN_G3V2	THC2684450	THC2684450	chr15	 95799058	 95799117	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1190_PI429285431	3.587264	P	3.743319	P	0.897475835458597	0	lncRNA	1181-1_{1..909}	"transcript_id ""ENST00000419640.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419640.1"" | genecode_v17"	chr2	192093891	192094799	-	ENSG00000227542.1	ENST00000419640.1	AC092614.2	AC092614.2-001	MYO1B	NA	chr2:192083891-192120898	inner
CUST_36153_PI429285431	3.8388546	P	2.996695	A	1.79273171142756	0	lncRNA	37428-1_{1..2332}	n344715|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_264|NULL|-1.3106900|-0.2293950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n344715|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_264|NULL|-1.3106900|-0.2293950	chr8	 37263821	 37266152	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12065_PI429285431	2.4443648	A	3.1994264	P	0.592521085544565	0	lncRNA	13653-1_{1..760}	lnc-FPGT-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FPGT-5:1	chr1	 73249353	 73250112	+	lnc-FPGT-5	lnc-FPGT-5:1	XLOC_000254	linc-FPGT-4	NA	NA	NA	inter
CUST_43704_PI429285431	2.8404949	A	2.4454885	A	1.31494859349076	0	lncRNA	48453-1_{1..2555}	"gi|300796266|ref|NR_034150.1| Homo sapiens uncharacterized LOC730227 (LOC730227), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300796266|ref|NR_034150.1| Homo sapiens uncharacterized LOC730227 (LOC730227), transcript variant 2, non-coding RNA"	Chr1	203267886	203270440	-	730227	NR_034150.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50"	NA	inter
CUST_46083_PI429285431	4.3688145	P	4.5971904	P	0.853595277728639	0	lncRNA	50353-2_{3001..6000}	"gi|398303861|ref|NR_073055.1| Homo sapiens solute carrier family 16, member 7 (monocarboxylic acid transporter 2) (SLC16A7), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|398303861|ref|NR_073055.1| Homo sapiens solute carrier family 16, member 7 (monocarboxylic acid transporter 2) (SLC16A7), transcript variant 4, non-coding RNA"	Chr12	 60086118	 60089117	+	9194	NR_073055.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00"	NA	inter
CUST_32642_PI429285431	3.4273891	P	2.6854806	A	1.67238672873615	0	lncRNA	34299-1_{1..3000}	n339265|D86965|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1697|NULL|6.3038200|-0.3014843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339265|D86965|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1697|NULL|6.3038200|-0.3014843	chr3	 17199898	 17202897	-	NA	NA	NA	NA	TBC1D5	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30chr3:17198654-17784240"	NA	inner
CUST_1843_PI429285431	0.89890623	A	0.91635525	A	0.987978108353658	0	lncRNA	1833-1_{1..610}	"transcript_id ""ENST00000510034.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510034.1"" | genecode_v17"	chr4	112561651	112562260	+	ENSG00000248656.1	ENST00000510034.1	RP11-255I10.2	RP11-255I10.2-001	NA	NA	NA	inter
CUST_31170_PI429285431	6.1060987	P	6.1363645	P	0.97923986726188	0	lncRNA	32965-1_{1..349}	n337592|S82917|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000398641|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000398641|-0.6458840|-0.0123599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337592|S82917|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000398641|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000398641|-0.6458840|-0.0123599	chr11	   637255	   637603	+	NA	NA	NA	NA	DEAF1	NA	chr11:644225-647604	inner
CUST_51188_PI429285431	0.89017344	A	0.8894111	A	1.00052855345681	0	lncRNA	54808-1_{1..764}	hg19_lincRNAsTranscripts_TCONS_l2_00008270 range=chr14:103734249-103739946 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008270 range=chr14:103734249-103739946 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr14	103734249	103735012	-	NA	NA	NA	NA	LOC441698	NA	chr14:103745362-103746139	inter
CUST_10212_PI429285431	1.3479192	A	0.8912755	A	1.37234546351786	0	lncRNA	11739-1_{1..3000}	lnc-PLA2R1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLA2R1-1:2	chr2	160789611	160792610	-	lnc-PLA2R1-1	lnc-PLA2R1-1:2	XLOC_002368	linc-LY75	PLA2R1	NA	chr2:160797260-160802473	inter
CUST_39950_PI429285431	8.770648	P	8.465067	P	1.23591626327696	0	lncRNA	40824-1_{1..956}	n406953|NR_024449|lncRNA|Homosapiens||RefGeneNoncode|NR_024449||2.1642500|-0.1458017	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406953|NR_024449|lncRNA|Homosapiens||RefGeneNoncode|NR_024449||2.1642500|-0.1458017	chrX	 53295505	 53296460	-	NA	NA	NA	NA	IQSEC2	NA	chrX:53285505-53320796	inner
CUST_25096_PI429285431	8.793862	P	8.712955	P	1.05768278034596	0	lncRNA	26633-1_{1..578}	lnc-INPPL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-INPPL1-1:1	chr11	 72013656	 72014233	+	lnc-INPPL1-1	lnc-INPPL1-1:1	ENSG00000255843.1	AP000593.7	CLPB	"hg19_refFlat_CLPB:range=chr11:72004411-721455185'pad=0,hg19_refFlat_CLPB:range=chr11:72004411-721455185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CLPB:range=chr11:72004411-721452765'pad=0,hg19_refFlat_CLPB:range=chr11:72004411-721452765'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20chr11:72003656-72024009"	NA	inner
CUST_16927_PI429285431	6.0076976	P	6.16591	P	0.896134756900346	0	lncRNA	18639-1_{1..496}	lnc-PIK3CG-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIK3CG-2:3	chr7	106417988	106418483	+	lnc-PIK3CG-2	lnc-PIK3CG-2:3	XLOC_006200	linc-PIK3CG-1	NA	NA	NA	inter
CUST_52097_PI429285431	3.388828	P	4.261341	P	0.546194616674213	0	lncRNA	55623-1_{1..668}	hg19_lincRNAsTranscripts_TCONS_l2_00017561 range=chr22:17308431-17310202 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017561 range=chr22:17308431-17310202 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17308431	 17309098	+	NA	NA	NA	NA	XKR3	NA	chr22:17298431-17302584	inter
CUST_1960_PI429285431	0.9070704	A	0.91729856	A	0.992935451805965	0	lncRNA	1953-1_{1..1417}	"transcript_id ""ENST00000512652.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512652.1"" | genecode_v17"	chr4	161460406	161461822	+	ENSG00000249425.1	ENST00000512652.1	RP11-502M1.2	RP11-502M1.2-001	NA	NA	NA	inter
CUST_37128_PI429285431	0.901862	A	0.8902811	A	1.00805957308277	0	lncRNA	38251-1_{1..1053}	n345569|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1118|NULL|-1.4120400|-0.4092129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345569|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1118|NULL|-1.4120400|-0.4092129	chr2	217385436	217386488	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7985_PI429285431	3.9615602	P	4.007771	P	0.968476669506964	0	lncRNA	9596-1_{1..484}	lnc-KIAA1919-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1919-3:8	chr6	111897565	111898048	+	lnc-KIAA1919-3	lnc-KIAA1919-3:8	ENSG00000231889	TRAF3IP2-AS1	TRAF3IP2	NA	chr6:111887565-111907956	inter
CUST_21418_PI429285431	7.69793	P	7.681261	P	1.01162107643929	0	lncRNA	23038-1_{1..555}	lnc-TIMM9-2:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMM9-2:13	chr14	 58753358	 58753912	-	lnc-TIMM9-2	lnc-TIMM9-2:13	ENSG00000257621.2	RP11-349A22.5	ARID4A	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-23.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30chr14:58751427-58763741"	NA	inter
CUST_40074_PI429285431	0.90586007	A	0.91320765	A	0.994919992742129	0	lncRNA	40921-4_{9001..9613}	n407337|NR_026800|lncRNA|Homosapiens||RefGeneNoncode|NR_026800||1.6663100|-0.1674070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407337|NR_026800|lncRNA|Homosapiens||RefGeneNoncode|NR_026800||1.6663100|-0.1674070	chr14	106392837	106393449	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34120_PI429285431	12.107071	P	11.741466	P	1.28842182113752	0	lncRNA	35643-1_{1..1569}	n340955|AF070538|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3420|NULL|-0.9758820|-0.2524689	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340955|AF070538|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3420|NULL|-0.9758820|-0.2524689	chr11	  6491370	  6492938	-	NA	NA	NA	NA	FXC1	NA	chr11:6502677-6502926	inner
CUST_49492_PI429285431	0.9107475	A	0.9069247	A	1.00265327676676	0	lncRNA	53284-1_{1..688}	hg19_lincRNAsTranscripts_TCONS_l2_00024038 range=chr6:11417283-11489312 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024038 range=chr6:11417283-11489312 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 11417283	 11417970	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38317_PI429285431	3.5902073	P	3.045777	A	1.4584443113484	0	lncRNA	39365-2_{3001..6000}	n382014|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uxg.2||0.0945765|-0.3389424	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382014|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uxg.2||0.0945765|-0.3389424	chr13	 40103015	 40106014	-	NA	NA	NA	NA	LHFP	"hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.71;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-62.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50chr13:40090015-40117556"	NA	inner
LNCA_19_P00320162	2.483554	A	2.7221236	A	0.847585257805029	0	lncRNA	XR_133247	XR_133247	XR_133247	NA	Hs.659312	LOC100132240	uncharacterized LOC100132240	NA	THC2611210	NA	"PREDICTED: Homo sapiens hypothetical LOC100132240 (LOC100132240), miscRNA [XR_133247]"	chr1:94218519-94218480	hs|1p22.1	Agilent_HUMAN_G3V2	XR_133247	XR_133247	chr1	 94218480	 94218519	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2697_PI429285431	6.5280766	P	6.8407707	P	0.805136835684028	0	lncRNA	2683-1_{1..379}	"transcript_id ""ENST00000420601.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420601.1"" | genecode_v17"	chr6	161347401	161347779	+	ENSG00000233342.1	ENST00000420601.1	RP11-235G24.3	RP11-235G24.3-001	NA	NA	NA	inter
CUST_8556_PI429285431	0.995926	A	1.9800428	A	0.5055351108532	0	lncRNA	10115-1_{1..1784}	lnc-SMAD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMAD3-1:1	chr15	 67340226	 67342009	+	lnc-SMAD3-1	lnc-SMAD3-1:1	ENSG00000251428	XLOC_011292	NA	NA	NA	inter
CUST_2552_PI429285431	0.9186659	A	0.90200585	A	1.0116148006982	0	lncRNA	2540-1_{1..662}	"transcript_id ""ENST00000413945.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413945.1"" | genecode_v17"	chr6	 72054047	 72054708	-	ENSG00000233237.2	ENST00000413945.1	LINC00472	LINC00472-001	NA	NA	NA	inter
CUST_13600_PI429285431	1.2586979	A	1.5041926	A	0.843526501371688	0	lncRNA	15239-1_{1..234}	lnc-RP11-152O14.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-152O14.2.1-2:1	chr16	 52060901	 52061134	-	lnc-RP11-152O14.2.1-2	lnc-RP11-152O14.2.1-2:1	XLOC_011939	linc-SALL1-6	LOC388276	NA	chr16:52060264-52071043	inner
CUST_3363_PI429285431	0.8986577	A	0.8924395	A	1.00431942975839	0	lncRNA	3338-1_{1..383}	"transcript_id ""ENST00000449531.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449531.1"" | genecode_v17"	chr9	  9799423	  9799805	+	ENSG00000230920.1	ENST00000449531.1	RP11-527D15.1	RP11-527D15.1-001	PTPRD	NA	chr9:9789423-9813784	inner
CUST_11814_PI429285431	3.243402	P	2.7497067	A	1.40804681327911	0	lncRNA	13396-1_{1..2924}	lnc-KDM6A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KDM6A-2:2	chrX	 45383979	 45386902	+	lnc-KDM6A-2	lnc-KDM6A-2:2	XLOC_007966	linc-ZNF673-4	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-27.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.30"	NA	inter
CUST_287_PI429201921	1.4376286	A	1.5835285	A	0.903815434935347	0	lncRNA	203-1_{1..3000}	TC08001782.hg.1	TCONS_l2_00028459-XLOC_l2_014099 // Broad TUCP // linc-DEFB105B-5 chr8:+:7170367-7177472 // chr8 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr8:+:7170367-7177472	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00028459-XLOC_l2_014099	linc-DEFB105B-5	chr8	  7170367	  7177472	+	NA	NA	NA	NA	NFYC	NA	chr1:41157242-41163260	Unknown
CUST_13859_PI429285431	0.899996	M	0.8991889	A	1.00055959560466	0	lncRNA	15503-1_{1..451}	lnc-SOD3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOD3-4:1	chr4	 23769942	 23770392	+	lnc-SOD3-4	lnc-SOD3-4:1	XLOC_003473	linc-SOD3-3	NA	NA	NA	inter
CUST_45605_PI429285431	3.463091	P	2.997018	P	1.38134434204587	0	lncRNA	49993-1_{1..3000}	"gi|216548548|ref|NR_024554.2| Homo sapiens Rho-related BTB domain containing 1 (RHOBTB1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|216548548|ref|NR_024554.2| Homo sapiens Rho-related BTB domain containing 1 (RHOBTB1), transcript variant 2, non-coding RNA"	Chr10	 62629196	 62632195	-	9886	NR_024554.2	NA	NA	NA	NA	NA	inter
CUST_5700_PI429285431	8.364722	P	8.060908	P	1.23440345070562	0	lncRNA	5624-1_{1..767}	"transcript_id ""ENST00000571595.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000571595.1"" | genecode_v17"	chr17	  1615545	  1616311	-	ENSG00000186594.6	ENST00000571595.1	MIR22HG	MIR22HG-003	WDR81	NA	chr17:1619817-1629635	inter
CUST_41908_PI429285431	12.8836	P	13.080354	P	0.872511468687976	0	lncRNA	43641-1_{1..74}	ENST00000581090 ncrna:miRNA chromosome:GRCh37:15:20563361:20563434:1 gene:ENSG00000265002 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581090 ncrna:miRNA chromosome:GRCh37:15:20563361:20563434:1 gene:ENSG00000265002 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 20563361	 20563434	+	ENSG00000265002	ENST00000581090	NA	NA	NA	NA	NA	inter
CUST_50629_PI429285431	0.9258456	A	0.9183142	A	1.00523401854233	0	lncRNA	54313-1_{1..693}	hg19_lincRNAsTranscripts_TCONS_l2_00002906 range=chr10:19620314-19641181 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002906 range=chr10:19620314-19641181 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 19620314	 19621006	+	NA	NA	NA	NA	C10orf112	NA	chr10:19610314-19651181	inter
CUST_16078_PI429285431	0.90426713	A	0.99462277	A	0.939291175193947	0	lncRNA	17781-1_{1..881}	lnc-MIPOL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MIPOL1-3:1	chr14	 38183860	 38184740	+	lnc-MIPOL1-3	lnc-MIPOL1-3:1	XLOC_010806	linc-SSTR1-3	TTC6	NA	chr14:38173860-38194001	inter
CUST_9611_PI429285431	0.90574	A	1.1825751	A	0.825399746287452	0	lncRNA	11127-1_{1..447}	lnc-ERI1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERI1-2:2	chr8	  9013662	  9014108	+	lnc-ERI1-2	lnc-ERI1-2:2	XLOC_006704	linc-TNKS-3	PPP1R3B	NA	chr8:9003662-9009152	inter
CUST_22897_PI429285431	0.92595994	A	1.1378181	A	0.863424442835749	0	lncRNA	24474-1_{1..837}	lnc-SAP30-5:31	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:31	chr4	174503856	174504692	+	lnc-SAP30-5	lnc-SAP30-5:31	ENSG00000237125.3	RP11-471J12.1	NA	NA	NA	inter
LNCA_21_P0002570	0.9281745	A	0.9151387	A	1.00907667343772	0	lncRNA	TCONS_00004689	NA	NA	NA	NA	XLOC_001331	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001331), lincRNA [TCONS_00004689]"	chr2:7870395-7870454	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_00004689	TCONS_00004689	chr2	  7870395	  7870454	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30216_PI429285431	7.1842394	P	7.4542923	P	0.829289137309234	0	lncRNA	31991-1_{1..503}	n335065|AJ586910|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249172|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249172|1.5108200|-0.0479389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335065|AJ586910|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249172|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249172|1.5108200|-0.0479389	chr19	 49458923	 49459425	+	NA	NA	NA	NA	GYS1	NA	chr19:49471382-49474268	inner
CUST_7064_PI429285431	0.96358126	A	0.9630631	A	1.00035922564916	0	lncRNA	7009-1_{1..1196}	"transcript_id ""ENST00000604849.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604849.1"" | genecode_v17"	chrX	 53123371	 53124566	+	ENSG00000232593.2	ENST00000604849.1	RP11-258C19.5	RP11-258C19.5-002	TSPYL2	"hg19_refFlat_POTEF:range=chr2:130831817-1308780885'pad=0,hg19_refFlat_POTEF:range=chr2:130831817-1308780885'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ACTL6B:range=chr7:100240869-1002539775'pad=0,hg19_refFlat_ACTL6B:range=chr7:100240869-1002539775'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_POTEE:range=chr2:131975976-1320222565'pad=0,hg19_refFlat_POTEE:range=chr2:131975976-1320222565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20chrX:53113371-53117728"	NA	inter
CUST_51806_PI429285431	5.5285525	P	5.863067	P	0.793050971567061	0	lncRNA	55357-1_{1..417}	hg19_lincRNAsTranscripts_TCONS_l2_00012941 range=chr19:22697148-22715272 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012941 range=chr19:22697148-22715272 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 22697148	 22697564	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27293_PI429285431	1.0722736	A	0.9050994	A	1.12285699464738	0	lncRNA	28851-1_{1..226}	n324445|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041583|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041583|-1.4293900|-0.5807499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324445|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041583|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041583|-1.4293900|-0.5807499	chr6	 98829742	 98829967	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25329_PI429285431	0.9128345	A	0.8970302	A	1.01101492848303	0	lncRNA	26861-1_{1..456}	lnc-AP001496.1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP001496.1-7:1	chr18	  5570792	  5571247	+	lnc-AP001496.1-7	lnc-AP001496.1-7:1	ENSG00000264000.1	RP11-286N3.2	NA	NA	NA	inter
LNCA_21_P0007179	3.4097147	P	2.3438332	A	2.09344860532927	0	lncRNA	TCONS_00019242	NA	NA	NA	NA	XLOC_009073	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009073), lincRNA [TCONS_00019242]"	chr11:15682066-15682125	hs|11p15.2	Agilent_HUMAN_G3V2	TCONS_00019242	TCONS_00019242	chr11	 15682066	 15682125	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20605_PI429285431	0.9043218	A	1.084777	A	0.882424529248006	0	lncRNA	22244-1_{1..565}	lnc-MEIS2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MEIS2-3:1	chr15	 36961178	 36961742	-	lnc-MEIS2-3	lnc-MEIS2-3:1	ENSG00000261191.1	RP11-16L14.2	C15orf41	NA	chr15:36951178-36971298	inner
LNCA_21_P0001420	0.91372347	A	0.92149997	A	0.99462424232959	0	lncRNA	TCONS_00001275	NA	NA	NA	NA	XLOC_000564	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000564), lincRNA [TCONS_00001275]"	chr1:218340108-218340167	hs|1q41	Agilent_HUMAN_G3V2	TCONS_00001275	TCONS_00001275	chr1	218340108	218340167	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26141_PI429285431	0.9044542	A	0.90229154	A	1.00150016580612	0	lncRNA	27652-1_{1..560}	lnc-RACGAP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RACGAP1-2:1	chr12	 50349368	 50349927	-	lnc-RACGAP1-2	lnc-RACGAP1-2:1	ENSG00000257378.1	RP11-469H8.8	AQP2	NA	chr12:50344524-50352664	inner
CUST_6231_PI429285431	4.0900526	P	4.388628	P	0.813054857188094	0	lncRNA	6157-1_{1..3000}	"transcript_id ""ENST00000567801.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000567801.1"" | genecode_v17"	chr18	 59415409	 59418408	+	ENSG00000260440.1	ENST00000567801.1	RP11-1096D5.1	RP11-1096D5.1-001	NA	NA	NA	inter
CUST_26208_PI429285431	1.982998	A	1.9762366	A	1.00469764484581	0	lncRNA	27718-1_{1..3000}	lnc-GJA10-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GJA10-3:3	chr6	 90569180	 90572179	+	lnc-GJA10-3	lnc-GJA10-3:3	ENSG00000118412.8	CASP8AP2	CASP8AP2	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.14;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70chr6:90559180-90580561"	NA	inner
LNCA_21_P0003436	0.9202858	A	1.4614213	A	0.687229799140427	0	lncRNA	ENST00000515222	NA	NA	NA	NA	XLOC_003825	NA	ENST00000515222	NA	NA	"BROAD Institute lincRNA (XLOC_003825), lincRNA [TCONS_00007692]"	chr4:188130136-188130195	hs|4q35.2	Agilent_HUMAN_G3V2	ENST00000515222	ENST00000515222	chr4	188130136	188130195	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007688	0.9212718	A	0.9247926	A	0.997562542841364	0	lncRNA	XR_109082	XR_109082	XR_109082	NA	Hs.282397	LOC100506159	uncharacterized LOC100506159	NA	THC2695163	NA	"PREDICTED: Homo sapiens hypothetical LOC100506159 (LOC100506159), miscRNA [XR_109082]"	chr12:10089275-10089216	hs|12p13.31	Agilent_HUMAN_G3V2	XR_109082	XR_109082	chr12	 10089216	 10089275	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40950_PI429285431	7.879676	P	7.841796	P	1.02660415163582	0	lncRNA	41627-3_{6001..6252}	n410935|NR_038397|lncRNA|Homosapiens||RefGeneNoncode|NR_038397||1.7563300|-0.4213743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n410935|NR_038397|lncRNA|Homosapiens||RefGeneNoncode|NR_038397||1.7563300|-0.4213743	chr1	172113723	172113974	-	NA	NA	NA	NA	DNM3	NA	chr1:172097723-172123975	inner
CUST_897_PI429285431	0.91435516	A	0.9119583	A	1.00166275760215	0	lncRNA	886-1_{1..563}	"transcript_id ""ENST00000423539.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423539.1"" | genecode_v17"	chr2	 64313484	 64314046	-	ENSG00000228079.1	ENST00000423539.1	AC012368.1	AC012368.1-001	PELI1	NA	chr2:64319786-64325380	inter
LNCA_21_P0009656	4.1279693	P	4.8767037	P	0.595125400590206	0	lncRNA	XR_109571	XR_109571	XR_109571	NA	Hs.729638	LOC100507353	uncharacterized LOC100507353	NA	THC2616784	NA	"PREDICTED: Homo sapiens hypothetical LOC100507353, transcript variant 1 (LOC100507353), miscRNA [XR_109571]"	chr19:13629849-13629790	hs|19p13.2	Agilent_HUMAN_G3V2	XR_109571	XR_109571	chr19	 13629790	 13629849	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28105_PI429285431	3.0801635	P	3.1391249	P	0.959954944751764	0	lncRNA	29727-1_{1..548}	n325377|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324018|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324018|-1.0086700|-0.3195062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325377|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324018|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324018|-1.0086700|-0.3195062	chr2	 21714807	 21715354	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8007_PI429285431	0.9147469	A	0.9271329	A	0.991451427648286	0	lncRNA	9618-1_{1..2986}	lnc-ZNF644-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ZNF644-1:6	chr1	 91301383	 91304368	-	lnc-ZNF644-1	lnc-ZNF644-1:6	ENSG00000233593	XLOC_000915	NA	NA	NA	inter
CUST_46990_PI429285431	0.9164817	A	0.9269415	A	0.992776038279357	0	lncRNA	51089-1_{1..670}	"gi|397139677|ref|XR_109475.2| PREDICTED: Homo sapiens uncharacterized LOC100506837 (LOC100506837), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139677|ref|XR_109475.2| PREDICTED: Homo sapiens uncharacterized LOC100506837 (LOC100506837), misc_RNA"	Chr18	 35193197	 35193866	+	100506837	XR_109475.2	NA	NA	NA	NA	NA	inter
CUST_17116_PI429285431	1.7374532	A	1.6475997	A	1.06426210534037	0	lncRNA	18826-1_{1..635}	lnc-GLI2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLI2-2:1	chr2	121807739	121808373	+	lnc-GLI2-2	lnc-GLI2-2:1	XLOC_001644	linc-TSN-3	NA	NA	NA	inter
CUST_15677_PI429285431	1.1830175	A	1.4322222	A	0.841360095564263	0	lncRNA	17363-3_{6001..7437}	lnc-RP4-725G10.1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP4-725G10.1.1-4:1	chr7	 56611742	 56613178	-	lnc-RP4-725G10.1.1-4	lnc-RP4-725G10.1.1-4:1	XLOC_006457	linc-LOC389493-5	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80"	NA	inter
CUST_41712_PI429285431	3.3160837	P	3.4827683	A	0.890887643946607	0	lncRNA	43218-1_{1..74}	ENST00000577341 ncrna:miRNA chromosome:GRCh37:1:16875409:16875482:1 gene:ENSG00000266584 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577341 ncrna:miRNA chromosome:GRCh37:1:16875409:16875482:1 gene:ENSG00000266584 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 16875409	 16875482	+	ENSG00000266584	ENST00000577341	NA	NA	LOC100133301	NA	chr1:16865561-16866070	inter
CUST_23401_PI429285431	0.9121809	A	1.1707711	A	0.835904365270608	0	lncRNA	24969-1_{1..491}	lnc-AC023632.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC023632.1-1:1	chr8	 95546166	 95546656	+	lnc-AC023632.1-1	lnc-AC023632.1-1:1	ENSG00000254315.1	RP11-267M23.3	KIAA1429	"hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-60.30chr8:95536166-95556619"	NA	inner
LNCA_21_P0012704	0.92245877	A	0.91829723	A	1.00288872406331	0	lncRNA	TCONS_l2_00021489	NA	NA	NA	NA	XLOC_l2_011423	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011423), lincRNA [TCONS_l2_00021489]"	chr4:190628815-190628756	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_l2_00021489	TCONS_l2_00021489	chr4	190628756	190628815	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_71_PI429285431	1.594049	A	1.3889273	A	1.15278358692336	0	lncRNA	67-1_{1..3000}	"transcript_id ""ENST00000225973.5"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000225973.5"" | genecode_v17"	chr17	 41181274	 41184273	+	ENSG00000267267.1	ENST00000225973.5	CTD-3199J23.4	CTD-3199J23.4-001	VAT1	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40chr17:41171274-41174459"	NA	inner
CUST_40842_PI429285431	1.2163953	A	1.4876268	A	0.828611931789015	0	lncRNA	41545-1_{1..1316}	n410614|NR_037860_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037860_6||-0.1830050|-0.2384702	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410614|NR_037860_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037860_6||-0.1830050|-0.2384702	chr6	  3512210	  3513525	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8743_PI429285431	0.9067445	A	0.91067123	A	0.997281898915951	0	lncRNA	10286-1_{1..564}	lnc-IRF2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRF2-3:2	chr4	185268866	185269429	-	lnc-IRF2-3	lnc-IRF2-3:2	ENSG00000180712	XLOC_004204	NA	NA	NA	inter
CUST_24181_PI429285431	0.9199207	A	0.9184799	A	1.00099918531112	0	lncRNA	25732-1_{1..542}	lnc-C2orf42-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:7	chr2	 70314205	 70314746	-	lnc-C2orf42-3	lnc-C2orf42-3:7	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_45254_PI429285431	4.3227386	P	1.7660186	A	5.88368495990433	0	lncRNA	49707-1_{1..2993}	"gi|302148489|ref|NR_036472.1| Homo sapiens enhancer of yellow 2 homolog (Drosophila) (ENY2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|302148489|ref|NR_036472.1| Homo sapiens enhancer of yellow 2 homolog (Drosophila) (ENY2), transcript variant 4, non-coding RNA"	Chr8	110346552	110349544	+	56943	NR_036472.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0007270	0.9197634	A	0.91326916	A	1.00451161095506	0	lncRNA	TCONS_00019456	NA	NA	NA	NA	XLOC_009265	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009265), lincRNA [TCONS_00019456]"	chr11:104112423-104112482	hs|11q22.3	Agilent_HUMAN_G3V2	TCONS_00019456	TCONS_00019456	chr11	104112423	104112482	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21244_PI429285431	3.490438	P	4.012228	P	0.696507117164432	0	lncRNA	22870-1_{1..590}	lnc-PLAT-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLAT-3:3	chr8	 42128169	 42128758	-	lnc-PLAT-3	lnc-PLAT-3:3	ENSG00000253408.1	RP11-231D20.2	IKBKB	NA	chr8:42128820-42138429	inter
CUST_29245_PI429285431	1.4552928	A	1.2853738	A	1.12499532014156	0	lncRNA	30996-1_{1..383}	n332328|FM177952|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000559037_02|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000559037_02|-1.0536900|-0.3521193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332328|FM177952|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000559037_02|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000559037_02|-1.0536900|-0.3521193	chr6	  2482082	  2482464	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010480	1.896042	A	4.4803815	P	0.166738654074311	0	lncRNA	TCONS_00029924	NA	NA	NA	NA	XLOC_014399	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014399), lincRNA [TCONS_00029924]"	chr22:46001331-46001272	hs|22q13.31	Agilent_HUMAN_G3V2	TCONS_00029924	TCONS_00029924	chr22	 46001272	 46001331	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21562_PI429285431	0.9085261	A	1.0545362	A	0.903746399793322	0	lncRNA	23178-1_{1..517}	lnc-C1orf111-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf111-1:1	chr1	162287537	162288053	-	lnc-C1orf111-1	lnc-C1orf111-1:1	ENSG00000227094.1	RP11-565P22.2	NOS1AP	NA	chr1:162277537-162297584	inner
CUST_9357_PI429285431	2.7279935	A	2.0689144	A	1.57907434842448	0	lncRNA	10861-1_{1..1795}	lnc-TRIB2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIB2-5:1	chr2	 13469960	 13471754	+	lnc-TRIB2-5	lnc-TRIB2-5:1	XLOC_001358	linc-FAM84A-3	NA	NA	NA	inter
CUST_14000_PI429285431	1.1573079	A	0.9645326	A	1.14296030528675	0	lncRNA	15646-1_{1..3000}	lnc-ZNF572-1:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF572-1:15	chr8	125963058	125966057	+	lnc-ZNF572-1	lnc-ZNF572-1:15	XLOC_006916	linc-ZNF572	NA	NA	NA	inter
LNCA_21_P0005688	0.91271204	A	0.90370035	A	1.00626597712782	0	lncRNA	TCONS_00014675	NA	NA	NA	NA	XLOC_006774	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006774), lincRNA [TCONS_00014675]"	chr8:37440308-37440367	hs|8p11.23	Agilent_HUMAN_G3V2	TCONS_00014675	TCONS_00014675	chr8	 37440308	 37440367	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4039_PI429285431	1.5672168	A	1.1854565	A	1.3029306528654	0	lncRNA	4001-1_{1..1516}	"transcript_id ""ENST00000602322.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602322.1"" | genecode_v17"	chr11	 82896563	 82898078	-	ENSG00000269939.1	ENST00000602322.1	RP11-727A23.11	RP11-727A23.11-001	ANKRD42	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70chr11:82905291-82908078"	NA	inner
CUST_3232_PI429285431	0.8939388	A	0.8881347	A	1.00403119906302	0	lncRNA	3211-1_{1..436}	"transcript_id ""ENST00000521317.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521317.1"" | genecode_v17"	chr8	 93777930	 93778365	+	ENSG00000253577.1	ENST00000521317.1	RP11-100L22.3	RP11-100L22.3-001	NA	NA	NA	inter
CUST_20626_PI429285431	4.9856167	P	5.3420153	P	0.781112038109437	0	lncRNA	22265-1_{1..513}	lnc-FBXO31-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXO31-1:1	chr16	 87433627	 87434139	-	lnc-FBXO31-1	lnc-FBXO31-1:1	ENSG00000261592.1	RP11-178L8.3	FBXO31	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20chr16:87423627-87425708"	NA	inner
CUST_35557_PI429285431	4.706348	P	4.484018	P	1.16661618938975	0	lncRNA	36971-1_{1..1532}	n342687|CR619214|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5189|NULL|1.6518500|-0.1180391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342687|CR619214|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5189|NULL|1.6518500|-0.1180391	chr17	 29035713	 29037244	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15854_PI429285431	0.89265025	A	0.977475	A	0.942899066723985	0	lncRNA	17546-3_{6001..9000}	lnc-KLF7-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF7-1:7	chr2	208108812	208111811	-	lnc-KLF7-1	lnc-KLF7-1:7	XLOC_002473	linc-KLF7-2	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60"	NA	inter
CUST_37213_PI429285431	1.5763354	A	2.1266625	A	0.682865285841383	0	lncRNA	38325-2_{3001..3267}	n345648|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1197|NULL|-1.3146200|-0.3494960	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345648|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1197|NULL|-1.3146200|-0.3494960	chr4	120398770	120399036	+	NA	NA	NA	NA	PDE5A	NA	chr4:120415550-120419872	inter
CUST_41837_PI429285431	7.059915	P	7.514519	P	0.729710440140165	0	lncRNA	43456-1_{1..153}	ENST00000582223 ncrna:miRNA chromosome:GRCh37:16:15248707:15248859:-1 gene:ENSG00000264115 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582223 ncrna:miRNA chromosome:GRCh37:16:15248707:15248859:-1 gene:ENSG00000264115 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 15248707	 15248859	-	ENSG00000264115	ENST00000582223	NA	NA	NA	NA	NA	inter
CUST_25296_PI429285431	8.338682	P	9.026044	P	0.620988303404139	0	lncRNA	26827-1_{1..716}	lnc-ATMIN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ATMIN-1:1	chr16	 81064375	 81065090	+	lnc-ATMIN-1	lnc-ATMIN-1:1	ENSG00000261061.1	RP11-303E16.2	CENPN	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-21.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40chr16:81054375-81066712"	NA	inner
CUST_3570_PI429285431	1.300253	A	1.2387581	A	1.04354650880743	0	lncRNA	3540-1_{1..538}	"transcript_id ""ENST00000428088.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428088.1"" | genecode_v17"	chr9	141090383	141090920	-	ENSG00000237419.1	ENST00000428088.1	RP11-885N19.6	RP11-885N19.6-001	NA	NA	NA	inter
CUST_6523_PI429285431	1.1367024	A	0.9175577	A	1.16404328022241	0	lncRNA	6466-1_{1..594}	"transcript_id ""ENST00000599770.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599770.1"" | genecode_v17"	chr19	 42037647	 42038240	+	ENSG00000268355.1	ENST00000599770.1	AC006129.1	AC006129.1-002	NA	NA	NA	inter
CUST_36167_PI429285431	1.1378181	A	0.9005778	A	1.17873572553552	0	lncRNA	37440-1_{1..1533}	n344728|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_277|NULL|-1.4017000|-0.3825648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344728|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_277|NULL|-1.4017000|-0.3825648	chr10	 54316439	 54317971	-	NA	NA	NA	NA	MBL2	NA	chr10:54525140-54525304	inter
CUST_15317_PI429285431	0.91255236	A	0.91364133	A	0.999245468317086	0	lncRNA	16996-1_{1..846}	lnc-TTC27-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC27-1:12	chr2	 33153303	 33154148	+	lnc-TTC27-1	lnc-TTC27-1:12	XLOC_001418	linc-LTBP1	NA	NA	NA	inter
CUST_43599_PI429285431	10.976275	P	10.892011	P	1.06014676281177	0	lncRNA	48362-1_{1..592}	"gi|225007562|ref|NR_027356.1| Homo sapiens lymphocyte-specific protein 1 pseudogene (LOC645166), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|225007562|ref|NR_027356.1| Homo sapiens lymphocyte-specific protein 1 pseudogene (LOC645166), transcript variant 3, non-coding RNA"	NW_003871055.3	  1531492	  1532083	+	645166	NR_027356.2	NA	NA	NA	NA	NA	Unknown
CUST_47583_PI429285431	11.296569	P	11.676759	P	0.768336395641356	0	lncRNA	51587-1_{1..2116}	"gi|261878585|ref|NR_029427.1| Homo sapiens WD repeat domain 13 (WDR13), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|261878585|ref|NR_029427.1| Homo sapiens WD repeat domain 13 (WDR13), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_029427.1	NA	NA	NA	NA	NA	Unknown
CUST_36012_PI429285431	0.910824	A	0.9178515	A	0.995140752716601	0	lncRNA	37345-2_{3001..3523}	n344623|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_171|NULL|-1.4287700|-0.3104359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344623|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_171|NULL|-1.4287700|-0.3104359	chr14	 48705664	 48706186	-	NA	NA	NA	NA	NA	"hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-65.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-58.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10"	NA	inter
CUST_27982_PI429285431	1.4627727	A	1.2299637	A	1.17512074257967	0	lncRNA	29587-1_{1..926}	n325232|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329948|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329948|-1.2344800|-0.3554861	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325232|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329948|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329948|-1.2344800|-0.3554861	chr2	 98744832	 98745757	-	NA	NA	NA	NA	VWA3B	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_VWA3B:range=chr2:98709556-989288125'pad=0,hg19_refFlat_VWA3B:range=chr2:98709556-989288125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10chr2:98734832-98761905"	NA	inner
CUST_17422_PI429285431	1.0622053	A	1.5985236	A	0.689528314361783	0	lncRNA	19146-1_{1..2113}	lnc-APBB1IP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APBB1IP-1:1	chr10	 26882863	 26884975	+	lnc-APBB1IP-1	lnc-APBB1IP-1:1	XLOC_008419	linc-PDSS1-3	NA	NA	NA	inter
CUST_28002_PI429285431	1.3665954	A	1.9879049	A	0.650080597139457	0	lncRNA	29612-1_{1..574}	n325257|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327035|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327035|-1.1073700|-0.3072642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325257|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327035|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327035|-1.1073700|-0.3072642	chr2	 68915639	 68916212	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45914_PI429285431	1.2393062	A	1.7316291	A	0.710879580392144	0	lncRNA	50224-1_{1..2094}	"gi|397139428|ref|XR_110529.3| PREDICTED: Homo sapiens uncharacterized LOC100507145 (LOC100507145), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|397139428|ref|XR_110529.3| PREDICTED: Homo sapiens uncharacterized LOC100507145 (LOC100507145), misc_RNA"	NA	NA	NA	NA	NA	XR_110529.3	NA	NA	NA	NA	NA	Unknown
CUST_298_PI429201921	0.90854263	A	0.91288227	A	0.996996510296392	0	lncRNA	206-3_{6001..7155}	TC09001922.hg.1	TCONS_l2_00029716-XLOC_l2_014779 // Broad TUCP // linc-FAM75A7-1 chr9:+:40715523-40722679 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:+:40715523-40722679	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00029716-XLOC_l2_014779	linc-FAM75A7-1	chr9	 40715523	 40722679	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002913	0.90865004	A	0.89815336	A	1.00730227668263	0	lncRNA	ENST00000488882	NA	NA	NA	NA	XLOC_003349	NA	ENST00000488882	NA	NA	"BROAD Institute lincRNA (XLOC_003349), lincRNA [TCONS_00005902]"	chr3:182501219-182501160	hs|3q26.33	Agilent_HUMAN_G3V2	ENST00000488882	ENST00000488882	chr3	182501160	182501219	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25965_PI429285431	0.8948594	A	0.89117515	A	1.00255699103952	0	lncRNA	27485-1_{1..883}	lnc-PPP6C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP6C-2:1	chr9	127886092	127886974	-	lnc-PPP6C-2	lnc-PPP6C-2:1	ENSG00000230396.1	RP11-366O20.2	SCAI	NA	chr9:127876092-127896583	inner
CUST_268_PI429201921	6.392311	P	6.689413	P	0.813885640497454	0	lncRNA	194-3_{6001..6576}	TC01005980.hg.1	TCONS_l2_00002726-XLOC_l2_001220 // Broad TUCP // linc-ZNF648-1 chr1:-:182031811-182038388 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:182031811-182038388	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00002726-XLOC_l2_001220	linc-ZNF648-1	chr1	182031811	182038388	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30259_PI429285431	5.604581	P	5.2171173	P	1.30809171780713	0	lncRNA	32034-1_{1..312}	n335136|AY236965|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251145|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251145|1.2480300|-0.0963894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335136|AY236965|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251145|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251145|1.2480300|-0.0963894	chr14	 60716336	 60716647	+	NA	NA	NA	NA	PPM1A	NA	chr14:60712470-60759655	inner
LNCA_21_P0001430	2.6387794	A	4.213292	P	0.335756538503713	0	lncRNA	THC2699644	NA	NA	NA	NA	XLOC_000587	NA	NA	THC2699644	NA	"BROAD Institute lincRNA (XLOC_000587), lincRNA [TCONS_00001308]"	chr1:225898214-225898272	hs|1q42.12	Agilent_HUMAN_G3V2	THC2699644	THC2699644	chr1	225898214	225898272	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45112_PI429285431	4.384921	P	4.965439	P	0.668723628903813	0	lncRNA	49593-1_{1..2167}	"gi|394025761|ref|NR_073000.1| Homo sapiens ARP3 actin-related protein 3 homolog B (yeast) (ACTR3B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|394025761|ref|NR_073000.1| Homo sapiens ARP3 actin-related protein 3 homolog B (yeast) (ACTR3B), transcript variant 3, non-coding RNA"	Chr7	152456834	152459000	+	57180	NR_073000.1	NA	NA	NA	NA	NA	inter
CUST_29173_PI429285431	1.5509369	A	1.0081615	A	1.45677230468305	0	lncRNA	30917-1_{1..785}	n326685|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007958|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007958|-1.0462300|-0.2146799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326685|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007958|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007958|-1.0462300|-0.2146799	chr1	 20597184	 20597968	-	NA	NA	NA	NA	VWA5B1	NA	chr1:20617412-20637819	inner
CUST_28837_PI429285431	0.90960157	A	1.3924582	A	0.715559366271683	0	lncRNA	30545-1_{1..461}	n326251|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090163|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090163|-1.0657000|-0.2998799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326251|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090163|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090163|-1.0657000|-0.2998799	chr1	209926486	209926946	+	NA	NA	NA	NA	TRAF3IP3	NA	chr1:209917720-209940068	inner
CUST_32774_PI429285431	9.250142	P	9.271004	P	0.985643613490979	0	lncRNA	34408-2_{3001..3471}	n339412|BC045680|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1844|NULL|-1.0030400|-0.3140401	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339412|BC045680|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1844|NULL|-1.0030400|-0.3140401	chr3	106970220	106970690	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80"	NA	inter
LNCA_21_P0004123	3.7515876	P	4.2971992	P	0.685100906903427	0	lncRNA	ENST00000506463	NA	NA	NA	NA	XLOC_004794	NA	ENST00000506463	THC2675522	NA	"BROAD Institute lincRNA (XLOC_004794), lincRNA [TCONS_00009644]"	chr5:38710535-38710476	hs|5p13.1	Agilent_HUMAN_G3V2	ENST00000506463	ENST00000506463	chr5	 38710476	 38710535	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48038_PI429285431	0.9128978	A	0.91874635	A	0.995954300041325	0	lncRNA	51919-1_{1..999}	"gi|410170317|ref|XR_159072.2| PREDICTED: Homo sapiens uncharacterized LOC100134822 (LOC100134822), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170317|ref|XR_159072.2| PREDICTED: Homo sapiens uncharacterized LOC100134822 (LOC100134822), misc_RNA"	NA	NA	NA	NA	NA	XR_159072.2	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60"	NA	Unknown
CUST_41681_PI429285431	0.9109136	A	0.89834917	A	1.00874703289518	0	lncRNA	43141-1_{1..77}	ENST00000584244 ncrna:miRNA chromosome:GRCh37:2:19548190:19548266:1 gene:ENSG00000266738 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584244 ncrna:miRNA chromosome:GRCh37:2:19548190:19548266:1 gene:ENSG00000266738 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 19548190	 19548266	+	ENSG00000266738	ENST00000584244	NA	NA	OSR1	NA	chr2:19551246-19558266	inter
CUST_19340_PI429285431	0.9293567	A	0.9307768	A	0.999016145990923	0	lncRNA	21006-1_{1..842}	lnc-BPY2C-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>lnc-BPY2C-3:1	chrY	 27540773	 27541614	-	lnc-BPY2C-3	lnc-BPY2C-3:1	ENSG00000228786.1	LINC00266-4P	NA	NA	NA	inter
CUST_33133_PI429285431	0.9108639	A	0.90322405	A	1.00530958664498	0	lncRNA	34729-1_{1..710}	n339822|BC029569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2269|NULL|-1.0969700|-0.2018654	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339822|BC029569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2269|NULL|-1.0969700|-0.2018654	chr4	  4922532	  4923241	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11977_PI429285431	0.9110131	A	0.89481163	A	1.01129329644363	0	lncRNA	13557-1_{1..898}	lnc-GKN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GKN2-1:1	chr2	 69144809	 69145706	-	lnc-GKN2-1	lnc-GKN2-1:1	XLOC_002148	linc-BMP10	NA	NA	NA	inter
CUST_24023_PI429285431	1.2066554	A	0.92355365	A	1.21680817432089	0	lncRNA	25576-1_{1..533}	lnc-CHD1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHD1-1:4	chr5	 98108671	 98109203	-	lnc-CHD1-1	lnc-CHD1-1:4	ENSG00000246763.2	CTC-463N11.3	RGMB	NA	chr5:98098671-98118776	inter
CUST_51271_PI429285431	0.90204024	A	1.3084048	A	0.754522297110309	0	lncRNA	54877-1_{1..1814}	hg19_lincRNAsTranscripts_TCONS_l2_00008965 range=chr15:29087009-29089115 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008965 range=chr15:29087009-29089115 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 29087009	 29088822	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-50.94;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10"	NA	inter
CUST_15125_PI429285431	9.199763	P	8.960687	P	1.1802365155972	0	lncRNA	16785-1_{1..219}	lnc-WISP3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WISP3-2:1	chr6	112197697	112197915	+	lnc-WISP3-2	lnc-WISP3-2:1	XLOC_005429	linc-WISP3-2	FYN	NA	chr6:112187697-112194655	inter
CUST_45346_PI429285431	5.1562037	P	5.821871	P	0.630397054937266	0	lncRNA	49783-2_{3001..4723}	"gi|154816179|ref|NR_003670.1| Homo sapiens keratinocyte growth factor-like protein 2 (KGFLP2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|154816179|ref|NR_003670.1| Homo sapiens keratinocyte growth factor-like protein 2 (KGFLP2), non-coding RNA"	Chr9	 41961802	 41963524	-	654466	NR_003670.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0006743	1.7806215	A	0.9143881	A	1.82289744677534	0	lncRNA	ENST00000440932	NA	NA	NA	NA	XLOC_008766	NA	ENST00000440932	THC2663754	NA	"BROAD Institute lincRNA (XLOC_008766), lincRNA [TCONS_00017945]"	chr10:30843103-30843044	hs|10p11.23	Agilent_HUMAN_G3V2	ENST00000440932	ENST00000440932	chr10	 30843044	 30843103	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010470	0.9266602	A	1.7123983	A	0.580055118144331	0	lncRNA	TCONS_00029850	NA	NA	NA	NA	XLOC_014288	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014288), lincRNA [TCONS_00029850]"	chr22:51033790-51033849	hs|22q13.33	Agilent_HUMAN_G3V2	TCONS_00029850	TCONS_00029850	chr22	 51033790	 51033849	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48464_PI429285431	13.066811	P	12.944368	P	1.08857665327622	0	lncRNA	52316-1_{1..613}	hg19_lincRNAsTranscripts_TCONS_l2_00001799 range=chr1:224051082-224051801 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001799 range=chr1:224051082-224051801 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	224051082	224051694	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013613	0.92784894	A	0.914982	A	1.00895857313873	0	lncRNA	TCONS_l2_00029163	NA	NA	NA	NA	XLOC_l2_015090	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015090), lincRNA [TCONS_l2_00029163]"	chr9:111547-111488	hs|9p24.3	Agilent_HUMAN_G3V2	TCONS_l2_00029163	TCONS_l2_00029163	chr9	   111488	   111547	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23794_PI429285431	0.9245459	A	0.91718507	A	1.00511517663462	0	lncRNA	25359-1_{1..815}	lnc-SPATA16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPATA16-1:1	chr3	173638316	173639130	-	lnc-SPATA16-1	lnc-SPATA16-1:1	ENSG00000228213.1	NLGN1-AS1	NLGN1	NA	chr3:173628316-173648586	inner
CUST_48565_PI429285431	0.90366954	A	0.9018615	A	1.00125402345903	0	lncRNA	52413-1_{1..613}	hg19_lincRNAsTranscripts_TCONS_l2_00014338 range=chr2:242876082-242908410 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014338 range=chr2:242876082-242908410 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	242876082	242876694	+	NA	NA	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80"	NA	inter
CUST_19759_PI429285431	5.2340865	P	4.9760437	P	1.19585527332872	0	lncRNA	21417-1_{1..404}	lnc-SRR-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRR-2:1	chr17	  2117453	  2117856	+	lnc-SRR-2	lnc-SRR-2:1	ENSG00000236838.2	AC090617.1	SMG6	NA	chr17:2107453-2127708	inner
CUST_16287_PI429285431	2.8612576	A	3.04092	A	0.882909578688771	0	lncRNA	17993-1_{1..775}	lnc-SYNPO2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYNPO2-2:1	chr4	119771867	119772641	+	lnc-SYNPO2-2	lnc-SYNPO2-2:1	XLOC_003665	linc-SYNPO2-2	NA	NA	NA	inter
CUST_24074_PI429285431	1.7461209	A	1.4597855	A	1.21953858135943	0	lncRNA	25624-1_{1..812}	lnc-RNF11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF11-1:1	chr1	 51800425	 51801236	+	lnc-RNF11-1	lnc-RNF11-1:1	ENSG00000261664.1	RP11-275F13.1	TTC39A	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90chr1:51790425-51810785"	NA	inner
LNCA_19_P00320740	2.9017606	A	3.0319004	P	0.913742902446583	0	lncRNA	AK126481	NA	AK126481	NA	NA	XLOC_004598	NA	NA	THC2516773	NA	"BROAD Institute lincRNA (XLOC_004598), lincRNA [TCONS_00009539]"	chr5:148795085-148795144	hs|5q32	Agilent_HUMAN_G3V2	AK126481	AK126481	chr5	148795085	148795144	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10262_PI429285431	8.8492775	P	6.9183397	P	3.81302978357827	0	lncRNA	11788-1_{1..809}	lnc-NAA35-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAA35-1:2	chr9	 88487334	 88488142	+	lnc-NAA35-1	lnc-NAA35-1:2	XLOC_007433	linc-NAA35-1	NA	NA	NA	inter
CUST_36698_PI429285431	2.9913714	A	2.8369915	A	1.11294314955301	0	lncRNA	37879-1_{1..2126}	n345186|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_735|NULL|-1.3744600|-0.2867834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345186|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_735|NULL|-1.3744600|-0.2867834	chr12	 89749210	 89751335	+	NA	NA	NA	NA	DUSP6	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-30.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-20.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr12:89739210-89746296"	NA	inter
LNCA_21_P0011152	1.6142361	A	0.9120243	A	1.62699723587419	0	lncRNA	THC2747663	NA	NA	NA	NA	XLOC_l2_003792	NA	NA	THC2747663	NA	"BROAD Institute lincRNA (XLOC_l2_003792), lincRNA [TCONS_l2_00006932]"	NA	NA	Agilent_HUMAN_G3V2	THC2747663	THC2747663	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_327_PI429285431	1.1047478	A	0.91901445	A	1.13739498634945	0	lncRNA	319-1_{1..714}	"transcript_id ""ENST00000456933.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456933.1"" | genecode_v17"	chr1	 95975723	 95976436	+	ENSG00000228971.2	ENST00000456933.1	RP11-286B14.1	RP11-286B14.1-001	NA	NA	NA	inter
CUST_13357_PI429285431	1.1366031	A	1.9996125	A	0.549804492348528	0	lncRNA	14994-1_{1..1171}	lnc-PRSS42-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRSS42-1:1	chr3	 46888287	 46889457	-	lnc-PRSS42-1	lnc-PRSS42-1:1	XLOC_003111	linc-PRSS42	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10"	NA	inter
CUST_11322_PI429285431	0.9152116	A	0.9191327	A	0.997285790735003	0	lncRNA	12885-1_{1..277}	lnc-IGFBP7-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGFBP7-5:2	chr4	 59853822	 59854098	-	lnc-IGFBP7-5	lnc-IGFBP7-5:2	XLOC_003962	linc-IGFBP7-7	NA	NA	NA	inter
CUST_24417_PI429285431	1.259331	A	2.038491	A	0.582705971323444	0	lncRNA	25970-1_{1..497}	lnc-PABPC4-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PABPC4-2:3	chr1	 40007392	 40007888	-	lnc-PABPC4-2	lnc-PABPC4-2:3	ENSG00000182109.3	RP11-69E11.4	NA	"hg19_refFlat_BMP8A:range=chr1:39957664-399914705'pad=0,hg19_refFlat_BMP8A:range=chr1:39957664-399914705'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_BMP8B:range=chr1:40226091-402541575'pad=0,hg19_refFlat_BMP8B:range=chr1:40226091-402541575'pad=0 3'pad=0 strand=- repeatMasking=none,-100.30"	NA	inter
CUST_46142_PI429285431	0.9103855	A	1.5478739	A	0.642831085286289	0	lncRNA	50393-1_{1..3000}	"gi|300068995|ref|NR_033952.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|300068995|ref|NR_033952.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NR_033952.1	NA	NA	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60"	NA	Unknown
CUST_50110_PI429285431	2.8179772	A	2.6760907	A	1.10334693389123	0	lncRNA	53840-1_{1..921}	hg19_lincRNAsTranscripts_TCONS_l2_00028799 range=chr9:69065505-69106251 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028799 range=chr9:69065505-69106251 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69065505	 69066425	+	NA	NA	NA	NA	LOC100507370	NA	chr9:69065490-69089939	inter
CUST_31422_PI429285431	0.9260497	A	0.9546476	A	0.980372621313505	0	lncRNA	33194-1_{1..1294}	n337889|CR605357|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|272|NULL|-1.2488700|-0.2703721	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337889|CR605357|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|272|NULL|-1.2488700|-0.2703721	chr1	 40938726	 40940019	+	NA	NA	NA	NA	ZNF642	NA	chr1:40943302-40950020	inter
CUST_40902_PI429285431	0.8966184	A	0.8974054	A	0.999454641930699	0	lncRNA	41588-1_{1..1673}	n410738|NR_038190_3|lncRNA|Homosapiens||RefGeneNoncode|NR_038190_3||-0.6107010|-0.3526311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410738|NR_038190_3|lncRNA|Homosapiens||RefGeneNoncode|NR_038190_3||-0.6107010|-0.3526311	chr6	  3463485	  3465157	-	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr6:3453485-3456793"	NA	inter
CUST_9918_PI429285431	2.6188688	A	2.992853	P	0.77164853836613	0	lncRNA	11442-1_{1..815}	lnc-ABCA8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABCA8-1:1	chr17	 66820396	 66821210	-	lnc-ABCA8-1	lnc-ABCA8-1:1	XLOC_012559	linc-FAM20A-1	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-26.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70"	NA	inter
CUST_10532_PI429285431	0.8942517	A	0.8964186	A	0.998499146782825	0	lncRNA	12061-1_{1..304}	lnc-GABRB3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GABRB3-2:1	chr15	 26704487	 26704790	-	lnc-GABRB3-2	lnc-GABRB3-2:1	XLOC_011407	linc-ATP10A-1	NA	NA	NA	inter
CUST_32451_PI429285431	4.0416994	P	3.928631	P	1.08152603878805	0	lncRNA	34122-2_{3001..3820}	n339049|BC042638|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1478|NULL|-0.3442210|-0.3779596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339049|BC042638|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1478|NULL|-0.3442210|-0.3779596	chr2	182755577	182756396	-	NA	NA	NA	NA	SSFA2	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-34.81;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20chr2:182756472-182766390"	NA	inter
CUST_36572_PI429285431	0.92976105	A	1.2060182	A	0.825730471308836	0	lncRNA	37767-1_{1..1182}	n345069|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_618|NULL|-1.6476000|-0.2175443	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345069|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_618|NULL|-1.6476000|-0.2175443	chrX	 68109233	 68110414	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47824_PI429285431	4.7714133	P	4.108762	P	1.58298907637286	0	lncRNA	51737-1_{1..1353}	"gi|397140098|ref|XR_159152.1| PREDICTED: Homo sapiens uncharacterized LOC100996723 (LOC100996723), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397140098|ref|XR_159152.1| PREDICTED: Homo sapiens uncharacterized LOC100996723 (LOC100996723), misc_RNA"	NA	NA	NA	NA	NA	XR_159152.1	NA	NA	NA	NA	NA	Unknown
CUST_4978_PI429285431	0.99500626	A	1.5165601	A	0.696621140280621	0	lncRNA	4922-1_{1..821}	"transcript_id ""ENST00000556163.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556163.1"" | genecode_v17"	chr14	 98099681	 98100501	-	ENSG00000197176.3	ENST00000556163.1	RP11-76E12.1	RP11-76E12.1-003	NA	NA	NA	inter
CUST_6473_PI429285431	0.8931136	A	0.89489883	A	0.998763338156115	0	lncRNA	6414-1_{1..471}	"transcript_id ""ENST00000604453.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000604453.1"" | genecode_v17"	chr19	 35382933	 35383403	-	ENSG00000271649.1	ENST00000604453.1	CTC-523E23.13	CTC-523E23.13-001	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_14252_PI429285431	0.8868594	A	0.90852255	A	0.985096422887689	0	lncRNA	15909-1_{1..410}	lnc-XCL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-XCL1-2:1	chr1	168838215	168838624	+	lnc-XCL1-2	lnc-XCL1-2:1	XLOC_000456	linc-ATP1B1-2	NA	NA	NA	inter
LNCA_21_P0002632	7.443964	P	7.408453	P	1.02491978350099	0	lncRNA	ENST00000445534	NA	NA	NA	NA	XLOC_001910	NA	ENST00000445534	NA	NA	"BROAD Institute lincRNA (XLOC_001910), lincRNA [TCONS_00005038]"	chr2:238166229-238166288	hs|2q37.3	Agilent_HUMAN_G3V2	ENST00000445534	ENST00000445534	chr2	238166229	238166288	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36141_PI429285431	0.87653095	A	0.8933747	A	0.988392692830413	0	lncRNA	37422-5_{12001..15000}	n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	chr8	128101803	128104802	-	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00"	NA	inter
CUST_39600_PI429285431	6.2704477	P	6.266971	P	1.00241277086077	0	lncRNA	40544-1_{1..994}	n387627|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kdx.1||2.5653900|-0.1159869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n387627|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kdx.1||2.5653900|-0.1159869	chr7	 66010587	 66011580	-	NA	NA	NA	NA	NA	"hg19_refFlat_GTF2IRD1:range=chr7:73922411-740167605'pad=0,hg19_refFlat_GTF2IRD1:range=chr7:73922411-740167605'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10"	NA	inter
CUST_46139_PI429285431	1.3993635	A	0.9128014	A	1.4011021091997	0	lncRNA	50391-2_{3001..3543}	"gi|300069000|ref|NR_033955.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|300069000|ref|NR_033955.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NR_033955.1	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.00"	NA	Unknown
CUST_18393_PI429285431	4.8057885	P	4.8058777	P	0.999938173182851	0	lncRNA	20118-1_{1..257}	lnc-ARHGEF35-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARHGEF35-1:14	chr7	144040280	144040536	-	lnc-ARHGEF35-1	lnc-ARHGEF35-1:14	ENSG00000244479	RP4-798C17.6	NA	NA	NA	inter
CUST_41631_PI429285431	9.796329	P	10.141148	P	0.787406758140683	0	lncRNA	43021-1_{1..70}	ENST00000584178 ncrna:miRNA chromosome:GRCh37:15:23807209:23807278:-1 gene:ENSG00000265673 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584178 ncrna:miRNA chromosome:GRCh37:15:23807209:23807278:-1 gene:ENSG00000265673 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 23807209	 23807278	-	ENSG00000265673	ENST00000584178	NA	NA	MKRN3	NA	chr15:23810454-23813167	inter
CUST_29683_PI429285431	3.6667633	P	4.001131	P	0.79313167178618	0	lncRNA	31445-1_{1..545}	n333338|AY255588|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085526|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085526|2.4727900|-0.0330071	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333338|AY255588|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085526|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085526|2.4727900|-0.0330071	chr14	 59931105	 59931649	-	NA	NA	NA	NA	C14orf149	NA	chr14:59939406-59941650	inner
CUST_51402_PI429285431	2.133383	A	2.0063798	A	1.09202296792742	0	lncRNA	54983-1_{1..616}	hg19_lincRNAsTranscripts_TCONS_l2_00009775 range=chr16:58847649-58896528 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009775 range=chr16:58847649-58896528 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 58847649	 58848264	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11836_PI429285431	0.92334324	A	1.8258446	A	0.534958410155219	0	lncRNA	13416-2_{3001..6000}	lnc-FAM174B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-FAM174B-2:1	chr15	 93117431	 93120430	-	lnc-FAM174B-2	lnc-FAM174B-2:1	XLOC_011584	linc-VPS33B-3	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90"	NA	inter
CUST_20980_PI429285431	0.91280997	A	0.9072852	A	1.00383682057128	0	lncRNA	22609-1_{1..401}	lnc-IL17B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL17B-1:1	chr5	148737088	148737488	-	lnc-IL17B-1	lnc-IL17B-1:1	ENSG00000253618.1	RP11-394O4.4	GRPEL2	"hg19_refFlat_GRPEL2:range=chr5:148725103-1487308455'pad=0,hg19_refFlat_GRPEL2:range=chr5:148725103-1487308455'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.90chr5:148727088-148734146"	NA	inter
CUST_18573_PI429285431	0.8938662	A	0.8949222	A	0.999268304397206	0	lncRNA	20281-1_{1..782}	lnc-CLEC19A.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLEC19A.1-1:3	chr16	 19315384	 19316165	+	lnc-CLEC19A.1-1	lnc-CLEC19A.1-1:3	ENSG00000188477	CLEC19A	NA	NA	NA	inner
CUST_47697_PI429285431	1.3694901	A	2.1551576	A	0.580083504526908	0	lncRNA	51667-2_{3001..5641}	"gi|385137087|ref|NR_047625.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 55, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137087|ref|NR_047625.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 55, non-coding RNA"	ChrY	 15363259	 15365899	-	7404	NR_047625.1	NA	NA	NA	NA	NA	inter
CUST_12887_PI429285431	0.9154339	A	0.9239621	A	0.99410613955947	0	lncRNA	14515-1_{1..252}	lnc-AC102948.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC102948.1.1-1:1	chr17	 51004165	 51004416	+	lnc-AC102948.1.1-1	lnc-AC102948.1.1-1:1	XLOC_012253	linc-KIF2B-1	NA	NA	NA	inter
CUST_32552_PI429285431	0.9062345	A	1.0096102	A	0.930852379973161	0	lncRNA	34217-1_{1..3000}	n339166|BC047542|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1597|NULL|-0.8942860|-0.1909620	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339166|BC047542|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1597|NULL|-0.8942860|-0.1909620	chr2	231849085	231852084	-	NA	NA	NA	NA	SPATA3	NA	chr2:231860839-231870746	inter
CUST_26207_PI429285431	0.91269386	A	1.2822299	A	0.774031379487045	0	lncRNA	27717-2_{3001..4476}	lnc-CTD-2523D13.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2523D13.1.1-2:1	chr11	119532729	119534204	+	lnc-CTD-2523D13.1.1-2	lnc-CTD-2523D13.1.1-2:1	ENSG00000254561.1	RP11-196E1.3	PVRL1	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PVRL1:range=chr11:119508808-1195992635'pad=0,hg19_refFlat_PVRL1:range=chr11:119508808-1195992635'pad=0 3'pad=0 strand=- repeatMasking=none,-101.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr11:119519729-119539994"	NA	inner
CUST_11059_PI429285431	0.90928	A	1.2440158	A	0.792929332055398	0	lncRNA	12609-1_{1..203}	lnc-AKR1C2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AKR1C2-3:2	chr10	  4806162	  4806364	-	lnc-AKR1C2-3	lnc-AKR1C2-3:2	XLOC_008704	linc-KLF6-5	NA	NA	NA	inter
CUST_29911_PI429285431	4.102967	P	4.2200665	P	0.922039524364572	0	lncRNA	31675-1_{1..453}	n334031|M25327|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194993|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194993|1.6221600|-0.1886945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334031|M25327|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194993|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194993|1.6221600|-0.1886945	chr6	 32632576	 32633028	-	NA	NA	NA	NA	HLA-DQB1	NA	chr6:32627657-32634466	inner
CUST_2029_PI429285431	0.92150444	A	0.92147374	A	1.00002127984486	0	lncRNA	2020-1_{1..517}	"transcript_id ""ENST00000508156.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000508156.1"" | genecode_v17"	chr4	190742635	190743151	-	ENSG00000245685.2	ENST00000508156.1	AF146191.4	AF146191.4-003	FRG1	NA	chr4:190861974-190870896	inter
CUST_28167_PI429285431	7.168396	P	7.1356807	P	1.02293558472748	0	lncRNA	29793-1_{1..1036}	n325445|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323303|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323303|-1.0376900|-0.2723435	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325445|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323303|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323303|-1.0376900|-0.2723435	chr2	  8601172	  8602207	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.85;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20"	NA	inter
CUST_30780_PI429285431	0.9047834	A	0.89412284	A	1.00741670562885	0	lncRNA	32567-1_{1..404}	n336633|Z47219|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327314|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327314|2.5455000|-0.1094850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336633|Z47219|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327314|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327314|2.5455000|-0.1094850	chr14	106330426	106330829	-	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106859077	inter
LNCA_21_P0012924	3.3064346	P	2.9931188	A	1.24256024333517	0	lncRNA	TCONS_l2_00023062	NA	NA	NA	NA	XLOC_l2_012187	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012187), lincRNA [TCONS_l2_00023062]"	chr5:118073305-118070910	hs|5q23.1	Agilent_HUMAN_G3V2	TCONS_l2_00023062	TCONS_l2_00023062	chr5	118070910	118073305	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24214_PI429285431	5.552489	P	5.7882843	P	0.849216730906836	0	lncRNA	25765-1_{1..543}	lnc-TP53I11-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TP53I11-6:1	chr11	 44626568	 44627110	-	lnc-TP53I11-6	lnc-TP53I11-6:1	ENSG00000254693.1	RP11-58K22.5	CD82	"hg19_refFlat_CD82:range=chr11:44616213-446406765'pad=0,hg19_refFlat_CD82:range=chr11:44616213-446406765'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.10chr11:44616568-44636887"	NA	inner
LNCA_21_P0004758	2.6806235	A	2.0163836	A	1.58473311888646	0	lncRNA	ENST00000425089	NA	NA	NA	NA	XLOC_005749	NA	ENST00000425089	THC2740362	NA	"BROAD Institute lincRNA (XLOC_005749), lincRNA [TCONS_00011510]"	chr6:54705192-54705133	hs|6p12.1	Agilent_HUMAN_G3V2	ENST00000425089	ENST00000425089	chr6	 54705133	 54705192	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23697_PI429285431	0.90910494	A	1.2740059	A	0.776522180872951	0	lncRNA	25262-1_{1..423}	lnc-TAB2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TAB2-1:3	chr6	149564865	149565287	+	lnc-TAB2-1	lnc-TAB2-1:3	ENSG00000228408.1	RP1-111D6.3	NA	NA	NA	inter
CUST_50937_PI429285431	13.868828	P	13.833463	P	1.02481606739139	0	lncRNA	54578-1_{1..354}	hg19_lincRNAsTranscripts_TCONS_l2_00006239 range=chr12:54026622-54036661 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006239 range=chr12:54026622-54036661 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 54026622	 54026975	-	NA	NA	NA	NA	ATF7	NA	chr12:54016622-54020199	inter
CUST_31521_PI429285431	3.4459465	P	4.371788	P	0.526373403575293	0	lncRNA	33280-1_{1..3000}	n338009|AL122113|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|396|NULL|-0.9252970|-0.2111409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338009|AL122113|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|396|NULL|-0.9252970|-0.2111409	chr22	 28416308	 28419307	-	NA	NA	NA	NA	TTC28	NA	chr22:28406308-28429341	inner
CUST_25913_PI429285431	9.342207	P	9.208192	P	1.09734334682663	0	lncRNA	27432-1_{1..533}	lnc-ATP6V1C1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ATP6V1C1-1:1	chr8	103905770	103906302	+	lnc-ATP6V1C1-1	lnc-ATP6V1C1-1:1	ENSG00000253263.1	KB-1507C5.3	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-29.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	inter
CUST_22051_PI429285431	1.320188	A	0.90069926	A	1.33745350612436	0	lncRNA	23659-1_{1..488}	lnc-RP11-80A15.1.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-80A15.1.1-2:2	chr14	 25126731	 25127218	+	lnc-RP11-80A15.1.1-2	lnc-RP11-80A15.1.1-2:2	ENSG00000258657.1	RP11-104E19.1	NA	NA	NA	inter
CUST_786_PI429285431	0.8922148	A	0.8869816	A	1.00363396472223	0	lncRNA	779-1_{1..553}	"transcript_id ""ENST00000418165.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418165.1"" | genecode_v17"	chr2	 19226415	 19226967	-	ENSG00000236204.1	ENST00000418165.1	AC092594.1	AC092594.1-004	NA	NA	NA	inter
CUST_44096_PI429285431	1.3081077	A	1.72242	A	0.750377097146346	0	lncRNA	48762-1_{1..2370}	"gi|310119145|ref|XR_108453.1| PREDICTED: Homo sapiens uncharacterized LOC728208 (LOC728208), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310119145|ref|XR_108453.1| PREDICTED: Homo sapiens uncharacterized LOC728208 (LOC728208), misc_RNA"	NA	NA	NA	NA	NA	XR_108453.1	NA	NA	NA	NA	NA	Unknown
CUST_10894_PI429285431	1.9998121	A	2.224723	A	0.855647868361578	0	lncRNA	12435-1_{1..546}	lnc-SP140-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SP140-3:1	chr2	230993699	230994244	+	lnc-SP140-3	lnc-SP140-3:1	XLOC_001894	linc-SP140-3	NA	NA	NA	inter
CUST_2534_PI429285431	1.7262038	A	2.268477	A	0.686688067786296	0	lncRNA	2522-1_{1..394}	"transcript_id ""ENST00000451910.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451910.1"" | genecode_v17"	chr6	 43819494	 43819887	-	ENSG00000223469.1	ENST00000451910.1	RP11-344J7.2	RP11-344J7.2-001	NA	NA	NA	inter
CUST_16514_PI429285431	0.92234147	A	1.3162881	A	0.76104484343253	0	lncRNA	18214-1_{1..1305}	lnc-ZNF583-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF583-1:5	chr19	 56910263	 56911567	+	lnc-ZNF583-1	lnc-ZNF583-1:5	XLOC_013167	linc-ZNF583-1	ZNF583	NA	chr19:56915383-56920717	inter
LNCA_21_P0005866	4.9969444	P	4.549023	P	1.36407351626313	0	lncRNA	TCONS_00015068	NA	NA	NA	NA	XLOC_007146	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007146), lincRNA [TCONS_00015068]"	chr8:89611067-89611008	hs|8q21.3	Agilent_HUMAN_G3V2	TCONS_00015068	TCONS_00015068	chr8	 89611008	 89611067	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18478_PI429285431	2.1756501	A	2.3483448	A	0.887184029251395	0	lncRNA	20198-1_{1..1209}	lnc-EIF2AK3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EIF2AK3-4:1	chr2	 89165131	 89166339	-	lnc-EIF2AK3-4	lnc-EIF2AK3-4:1	ENSG00000231486	AC096579.7	NA	NA	NA	inter
CUST_47751_PI429285431	2.1396456	A	1.7103503	A	1.34657566674525	0	lncRNA	51694-2_{3001..5802}	"gi|385137096|ref|NR_047633.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 63, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137096|ref|NR_047633.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 63, non-coding RNA"	ChrY	 15363259	 15366060	-	7404	NR_047633.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008927	1.8343337	A	1.7864562	A	1.03374295685936	0	lncRNA	TCONS_00024379	NA	NA	NA	NA	XLOC_011706	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011706), lincRNA [TCONS_00024379]"	chr16:48005510-48005569	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00024379	TCONS_00024379	chr16	 48005510	 48005569	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42018_PI429285431	1.1313877	A	0.9094173	A	1.16632543986135	0	lncRNA	43884-1_{1..83}	ENST00000384907 ncrna:miRNA chromosome:GRCh37:16:14397824:14397906:1 gene:ENSG00000207639 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384907 ncrna:miRNA chromosome:GRCh37:16:14397824:14397906:1 gene:ENSG00000207639 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 14397824	 14397906	+	ENSG00000207639	ENST00000384907	NA	NA	NA	NA	NA	inter
CUST_17593_PI429285431	0.89977485	A	0.90002507	A	0.999826575752204	0	lncRNA	19319-1_{1..268}	lnc-C11orf74-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C11orf74-2:1	chr11	 38211342	 38211609	+	lnc-C11orf74-2	lnc-C11orf74-2:1	XLOC_009108	linc-API5-7	NA	NA	NA	inter
CUST_26_PI429201921	10.977144	P	10.849005	P	1.09288303053058	0	lncRNA	27-1_{1..999}	TC01004730.hg.1	 TCONS_00001143-XLOC_000398 // Rinn lincRNAs // linc-FCGR1A-2 chr1:+:149616220-149616885 // chr1 // 100 // 100 // 0 // --- // 0///TCONS_00002158-XLOC_000398 // Rinn lincRNAs // linc-FCGR1A-2 chr1:+:149615885-149616643 // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_00002157-XLOC_000398 // Rinn lincRNAs // linc-FCGR1A-2 chr1:+:149615885-149616643 // chr1 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:149615885-149616643	NA	Affy_HUMAN_HTA2.0	TCONS_00002158-XLOC_000398	linc-FCGR1A-2	chr1	149615885	149616643	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17160_PI429285431	1.2753122	A	1.6980909	A	0.745986434018293	0	lncRNA	18869-1_{1..259}	lnc-DHX37-10:20	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-10:20	chr12	127215834	127216092	-	lnc-DHX37-10	lnc-DHX37-10:20	XLOC_010244	linc-DHX37-4	NA	NA	NA	inter
CUST_3752_PI429285431	1.1025101	A	2.1661434	A	0.478425668427811	0	lncRNA	3721-1_{1..351}	"transcript_id ""ENST00000441776.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441776.1"" | genecode_v17"	chr10	 85432162	 85432512	-	ENSG00000233945.1	ENST00000441776.1	RP11-344L13.2	RP11-344L13.2-001	NA	NA	NA	inter
CUST_26297_PI429285431	1.5192286	A	0.9069924	A	1.52862676913887	0	lncRNA	27804-1_{1..140}	lnc-BAG2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BAG2-7:1	chr6	 58488888	 58489027	+	lnc-BAG2-7	lnc-BAG2-7:1	ENSG00000223633.1	RP11-143A22.1	NA	NA	NA	inter
CUST_32855_PI429285431	6.5449147	P	5.666003	P	1.83898753381795	0	lncRNA	34487-2_{3001..3430}	n339518|AK023647|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1959|NULL|-0.0176159|-0.3177456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339518|AK023647|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1959|NULL|-0.0176159|-0.3177456	chr21	 42654025	 42654454	+	NA	NA	NA	NA	BACE2	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70chr21:42641025-42648524"	NA	inter
CUST_29115_PI429285431	1.1569352	A	1.3181689	A	0.894260030211745	0	lncRNA	30850-1_{1..270}	n326615|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021839|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021839|-0.9847120|-0.2059939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326615|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021839|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021839|-0.9847120|-0.2059939	chr1	 48444223	 48444492	+	NA	NA	NA	NA	LOC388630	NA	chr1:48434223-48455102	inner
CUST_9592_PI429285431	3.534267	P	3.499323	P	1.02451705435894	0	lncRNA	11107-2_{3001..4623}	lnc-MSRB3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-MSRB3-2:2	chr12	 66009472	 66011094	+	lnc-MSRB3-2	lnc-MSRB3-2:2	XLOC_009788	linc-HMGA2	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_15407_PI429285431	3.939874	P	4.23243	P	0.816454277293084	0	lncRNA	17093-1_{1..662}	lnc-SUCLA2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUCLA2-6:1	chr13	 48278996	 48279657	-	lnc-SUCLA2-6	lnc-SUCLA2-6:1	XLOC_010599	linc-HTR2A-4	NA	NA	NA	inter
CUST_9624_PI429285431	1.0135328	A	1.1106195	A	0.934919011300653	0	lncRNA	11141-1_{1..645}	lnc-LSM11-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LSM11-7:2	chr5	157922270	157922914	+	lnc-LSM11-7	lnc-LSM11-7:2	XLOC_004616	linc-UBLCP1-2	NA	NA	NA	inter
CUST_51676_PI429285431	7.894444	P	8.482403	P	0.66528342698429	0	lncRNA	55238-1_{1..278}	hg19_lincRNAsTranscripts_TCONS_l2_00011437 range=chr17:67703268-67703659 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011437 range=chr17:67703268-67703659 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 67703268	 67703545	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51279_PI429285431	0.8970347	A	0.9215856	A	0.983126590751005	0	lncRNA	54885-1_{1..2269}	hg19_lincRNAsTranscripts_TCONS_l2_00008519 range=chr15:30763608-30778338 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008519 range=chr15:30763608-30778338 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 30763608	 30765876	+	NA	NA	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90"	NA	inter
LNCA_21_P0007839	1.2201618	A	1.566386	A	0.786640189138654	0	lncRNA	THC2617152	NA	NA	NA	NA	XLOC_009784	NA	NA	THC2617152	NA	"BROAD Institute lincRNA (XLOC_009784), lincRNA [TCONS_00021153]"	chr12:063013638-063013697	hs|12q14.1	Agilent_HUMAN_G3V2	THC2617152	THC2617152	chr12	 63013638	 63013697	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11651_PI429285431	6.906844	P	5.9910464	P	1.88661180481376	0	lncRNA	13228-1_{1..487}	lnc-CCKAR-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCKAR-5:3	chr4	 28389343	 28389829	-	lnc-CCKAR-5	lnc-CCKAR-5:3	XLOC_003917	linc-CCKAR-8	NA	NA	NA	inter
CUST_38281_PI429285431	0.8945443	A	0.89005333	A	1.00311775330797	0	lncRNA	39336-1_{1..2831}	n381903|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tcc.2||-1.0251800|-0.3348739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n381903|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tcc.2||-1.0251800|-0.3348739	chr12	 92815306	 92818136	+	NA	NA	NA	NA	CLLU1	NA	chr12:92815307-92824778	inter
CUST_39942_PI429285431	3.966388	P	4.1207643	P	0.898520733727141	0	lncRNA	40817-1_{1..1391}	n406900|NR_024388|lncRNA|Homosapiens||RefGeneNoncode|NR_024388||1.0202700|-0.1650580	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n406900|NR_024388|lncRNA|Homosapiens||RefGeneNoncode|NR_024388||1.0202700|-0.1650580	chr3	196669493	196670883	+	NA	NA	NA	NA	SENP5	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40chr3:196659493-196661585"	NA	inter
CUST_43265_PI429285431	0.9244174	A	0.9257103	A	0.999104231450651	0	lncRNA	48083-1_{1..828}	ENST00000554595 havana:sense_intronic chromosome:GRCh37:14:37566267:37567768:-1 gene:ENSG00000258827 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,ensembl.GRCh37.72,"	>ENST00000554595 havana:sense_intronic chromosome:GRCh37:14:37566267:37567768:-1 gene:ENSG00000258827 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr14	 37566267	 37567094	-	ENSG00000258827	ENST00000554595	NA	NA	SLC25A21	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10chr14:37556267-37577768"	NA	inner
LNCA_21_P0002601	1.6307065	A	1.7876656	A	0.896913586550351	0	lncRNA	TCONS_00004836	NA	NA	NA	NA	XLOC_001558	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001558), lincRNA [TCONS_00004836]"	chr2:86142236-86142295	hs|2p11.2	Agilent_HUMAN_G3V2	TCONS_00004836	TCONS_00004836	chr2	 86142236	 86142295	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46098_PI429285431	5.5705543	P	3.5121822	P	4.16516053068787	0	lncRNA	50363-1_{1..3000}	"gi|226342870|ref|NR_027449.1| Homo sapiens TBC1 domain family, member 15 (TBC1D15), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226342870|ref|NR_027449.1| Homo sapiens TBC1 domain family, member 15 (TBC1D15), transcript variant 4, non-coding RNA"	Chr12	 72233487	 72236486	+	64786	NR_027449.1	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_6245_PI429285431	0.8960624	A	0.8903086	A	1.00399619382109	0	lncRNA	6170-1_{1..496}	"transcript_id ""ENST00000581844.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581844.1"" | genecode_v17"	chr18	 65925576	 65926071	-	ENSG00000264699.1	ENST00000581844.1	RP11-421N8.2	RP11-421N8.2-001	NA	NA	NA	inter
CUST_1923_PI429285431	4.82279	P	5.082279	P	0.835383758463746	0	lncRNA	1914-1_{1..592}	"transcript_id ""ENST00000506645.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506645.1"" | genecode_v17"	chr4	142240604	142241195	-	ENSG00000248810.1	ENST00000506645.1	RP11-362F19.1	RP11-362F19.1-002	NA	NA	NA	inter
LNCA_33_P3268522	3.457427	P	3.5061398	P	0.9667985403029	0	lncRNA	XR_114037	NA	XR_114037	   644794	Hs.552124	LOC644794	uncharacterized LOC644794	NA	THC2667529	NA	"PREDICTED: Homo sapiens hypothetical LOC644794 (LOC644794), miscRNA [XR_114037]"	chr7:66368623-66368682	hs|7q11.21	Agilent_HUMAN_G3V2	XR_114037	XR_114037	chr7	 66368623	 66368682	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7392_PI429285431	2.6392872	A	2.9419458	A	0.810756955075048	0	lncRNA	9037-1_{1..2189}	lnc-AC007405.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC007405.2.1-2:1	chr2	171551497	171553685	-	lnc-AC007405.2.1-2	lnc-AC007405.2.1-2:1	ENSG00000213981	AC007277.3	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50"	NA	inter
CUST_29614_PI429285431	6.2260346	P	6.195814	P	1.02116825883969	0	lncRNA	31375-1_{1..350}	n333161|AF397013|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078968|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078968|0.0128527|-0.1872780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333161|AF397013|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078968|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078968|0.0128527|-0.1872780	chr7	 40174481	 40174830	+	NA	NA	NA	NA	C7orf10	NA	chr7:40174575-40231615	inner
CUST_24312_PI429285431	1.3529106	A	1.0861434	A	1.20310887107675	0	lncRNA	25863-1_{1..745}	lnc-SLC38A8-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC38A8-4:4	chr16	 83773523	 83774267	-	lnc-SLC38A8-4	lnc-SLC38A8-4:4	ENSG00000260788.1	RP11-298D21.1	CDH13	NA	chr16:83763523-83783626	inner
CUST_7936_PI429285431	3.7514627	P	2.8877084	A	1.81976770393398	0	lncRNA	9548-1_{1..625}	lnc-WDR74-1:24	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR74-1:24	chr11	 62621273	 62621897	-	lnc-WDR74-1	lnc-WDR74-1:24	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62631814	inter
CUST_17525_PI429285431	5.710467	P	5.8135514	P	0.931040350866274	0	lncRNA	19250-1_{1..525}	lnc-OR4M2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR4M2-7:1	chr15	 20529998	 20530522	+	lnc-OR4M2-7	lnc-OR4M2-7:1	XLOC_011157	linc-OR4M2-5	NA	NA	NA	inter
CUST_28717_PI429285431	0.929678	A	0.951604	A	0.984916960838606	0	lncRNA	30417-1_{1..430}	n326107|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046491|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046491|-1.1400300|-0.2398855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326107|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046491|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046491|-1.1400300|-0.2398855	chr10	  3564285	  3564714	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39435_PI429285431	1.1213026	A	0.91208285	A	1.15606278357907	0	lncRNA	40383-2_{3001..5018}	n386735|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tie.1||1.6019500|-0.4819346	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n386735|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tie.1||1.6019500|-0.4819346	chr13	 92003073	 92005090	+	NA	NA	NA	NA	NA	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
CUST_37117_PI429285431	0.9120124	A	0.89809614	A	1.00969268914701	0	lncRNA	38241-1_{1..3000}	n345559|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1108|NULL|-1.2768600|-0.4000273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345559|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1108|NULL|-1.2768600|-0.4000273	chr2	187378237	187381236	+	NA	NA	NA	NA	ZC3H15	NA	chr2:187368237-187374088	inter
CUST_45027_PI429285431	5.9597216	P	6.032796	P	0.950610076861254	0	lncRNA	49527-1_{1..3000}	"gi|239787135|ref|NR_027768.1| Homo sapiens dpy-19-like 2 pseudogene 2 (C. elegans) (DPY19L2P2), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239787135|ref|NR_027768.1| Homo sapiens dpy-19-like 2 pseudogene 2 (C. elegans) (DPY19L2P2), transcript variant 1, non-coding RNA"	Chr7	102815460	102818459	-	349152	NR_027768.1	NA	NA	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80"	NA	inter
CUST_13055_PI429285431	1.4317046	A	0.9158881	A	1.42980311455201	0	lncRNA	14680-1_{1..1126}	lnc-C15orf2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-7:1	chr15	 24603090	 24604215	+	lnc-C15orf2-7	lnc-C15orf2-7:1	XLOC_011177	linc-C15orf2-5	NA	NA	NA	inter
CUST_47244_PI429285431	0.91003853	A	1.3825815	A	0.720693145961414	0	lncRNA	51318-1_{1..2163}	"gi|372266167|ref|NR_045951.1| Homo sapiens visual system homeobox 1 (VSX1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372266167|ref|NR_045951.1| Homo sapiens visual system homeobox 1 (VSX1), transcript variant 6, non-coding RNA"	Chr20	 25051521	 25053683	-	30813	NR_045951.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014139	0.9275272	A	0.914826	A	1.00884266840214	0	lncRNA	ENST00000507837	XR_108559	XR_108559	NA	NA	MTRR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	ENST00000507837	THC2642391	GO:0050661|GO:0005506|GO:0010181|GO:0050660|GO:0005730|GO:0008652|GO:0009086|GO:0005634|GO:0005829|GO:0005737|GO:0030586|GO:0016491|GO:0006555|GO:0016723|GO:0045111|GO:0055114	"PREDICTED: Homo sapiens hypothetical LOC100288963, transcript variant 2 (LOC100288963), miscRNA [XR_108559]"	chr5:7862072-7862131	hs|5p15.31	Agilent_HUMAN_G3V2	ENST00000507837	ENST00000507837	chr5	  7862072	  7862131	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14398_PI429285431	1.643486	A	1.1565027	A	1.40151122571249	0	lncRNA	16060-1_{1..3000}	lnc-ASAP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASAP1-2:1	chr8	131541090	131544089	-	lnc-ASAP1-2	lnc-ASAP1-2:1	XLOC_007223	linc-ASAP1-1	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_14327_PI429285431	7.2886868	P	7.1240654	P	1.12087189403699	0	lncRNA	15985-1_{1..457}	lnc-SACS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SACS-1:1	chr13	 23551638	 23552094	-	lnc-SACS-1	lnc-SACS-1:1	XLOC_010533	linc-EFHA1-1	NA	NA	NA	inter
CUST_28208_PI429285431	3.0032496	P	3.1979246	A	0.873769710326023	0	lncRNA	29837-1_{1..368}	n325491|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322406|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322406|-1.4109500|-0.5090232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325491|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322406|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322406|-1.4109500|-0.5090232	chr2	   887182	   887549	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8758_PI429285431	9.601573	P	9.792564	P	0.876003779846032	0	lncRNA	10301-1_{1..536}	lnc-SNX17-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SNX17-1:2	chr2	 27580675	 27581210	+	lnc-SNX17-1	lnc-SNX17-1:2	ENSG00000234072	AC074117.10	EIF2B4	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60chr2:27587219-27591057"	NA	inter
CUST_12800_PI429285431	1.0365285	A	0.89790785	A	1.10085209606205	0	lncRNA	14427-1_{1..622}	lnc-WRAP73-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRAP73-1:2	chr1	  3541196	  3541817	-	lnc-WRAP73-1	lnc-WRAP73-1:2	XLOC_000683	linc-MEGF6	WRAP73	NA	chr1:3547331-3551307	inter
CUST_32691_PI429285431	3.080446	A	3.9628441	P	0.54246497647403	0	lncRNA	34337-1_{1..2498}	n339319|CR595799|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1751|NULL|-1.1790300|-0.4063992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339319|CR595799|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1751|NULL|-1.1790300|-0.4063992	chr3	 41781747	 41784244	-	NA	NA	NA	NA	ULK4	NA	chr3:41771747-41794245	inner
CUST_44861_PI429285431	5.9909472	P	6.075742	P	0.942918641283664	0	lncRNA	49387-1_{1..3000}	"gi|224967135|ref|NR_021487.2| Homo sapiens uncharacterized LOC114796 (KIAA1908), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224967135|ref|NR_021487.2| Homo sapiens uncharacterized LOC114796 (KIAA1908), transcript variant 3, non-coding RNA"	Chr7	  1609709	  1612708	+	114796	NR_021487.2	NA	NA	NA	NA	NA	inter
CUST_8531_PI429285431	2.4435802	A	1.2301272	A	2.31891992032645	0	lncRNA	10092-1_{1..939}	lnc-NRG2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NRG2-1:4	chr5	139486994	139487932	-	lnc-NRG2-1	lnc-NRG2-1:4	ENSG00000245146	CTB-131B5.4	PURA	NA	chr5:139493708-139497234	inter
CUST_21267_PI429285431	4.236297	P	5.01998	P	0.580881987779052	0	lncRNA	22892-1_{1..173}	lnc-C17orf80-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf80-4:1	chr17	 71639176	 71639348	+	lnc-C17orf80-4	lnc-C17orf80-4:1	ENSG00000264750.1	RP11-277J6.2	SDK2	NA	chr17:71629176-71640227	inner
CUST_23922_PI429285431	1.3229177	A	1.4365293	A	0.924271369781839	0	lncRNA	25479-1_{1..361}	lnc-BID-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BID-1:1	chr22	 18466108	 18466468	-	lnc-BID-1	lnc-BID-1:1	ENSG00000235445.1	XXbac-B476C20.14	MICAL3	NA	chr22:18456108-18476385	inner
CUST_1612_PI429285431	0.9092414	A	0.9165938	A	0.99491666875042	0	lncRNA	1598-1_{1..575}	"transcript_id ""ENST00000412486.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412486.1"" | genecode_v17"	chr3	191749998	191750572	+	ENSG00000232353.1	ENST00000412486.1	RP11-655G22.1	RP11-655G22.1-003	NA	NA	NA	inter
CUST_44221_PI429285431	1.8105412	A	2.3320477	A	0.696643999294422	0	lncRNA	48872-1_{1..3000}	"gi|292781202|ref|NR_033437.1| Homo sapiens uridine monophosphate synthetase (UMPS), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|292781202|ref|NR_033437.1| Homo sapiens uridine monophosphate synthetase (UMPS), transcript variant 3, non-coding RNA"	Chr3	124449213	124452212	+	7372	NR_033437.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
CUST_30474_PI429285431	13.996544	P	13.508149	P	1.40288329788327	0	lncRNA	32254-1_{1..343}	n335619|CR600624|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000279819|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000279819|-0.0816489|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335619|CR600624|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000279819|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000279819|-0.0816489|-1.0000000	chr15	 66791678	 66792020	-	NA	NA	NA	NA	MAP2K1	NA	chr15:66781678-66783882	inner
CUST_5885_PI429285431	0.90353435	A	0.9020107	A	1.00105667158611	0	lncRNA	5816-1_{1..601}	"transcript_id ""ENST00000507337.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507337.1"" | genecode_v17"	chr17	 47439744	 47440344	+	ENSG00000248714.2	ENST00000507337.1	RP11-1079K10.3	RP11-1079K10.3-003	ZNF652	NA	chr17:47429744-47439835	inner
CUST_15659_PI429285431	0.90754884	A	0.9028243	A	1.00328016960127	0	lncRNA	17351-2_{3001..6000}	lnc-SNURF-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNURF-1:7	chr15	 25268737	 25271736	+	lnc-SNURF-1	lnc-SNURF-1:7	XLOC_011183	linc-GABRA5-7	SNRPN	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40chr15:25255737-25291705"	NA	inter
CUST_20180_PI429285431	0.91094166	A	0.9096803	A	1.00087469044644	0	lncRNA	21824-1_{1..497}	lnc-GREM2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GREM2-3:2	chr1	240342866	240343362	-	lnc-GREM2-3	lnc-GREM2-3:2	ENSG00000233735.1	RP11-567G24.3	FMN2	"hg19_refFlat_FMN2:range=chr1:240255410-2406374545'pad=0,hg19_refFlat_FMN2:range=chr1:240255410-2406374545'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80chr1:240332866-240352944"	NA	inner
CUST_40905_PI429285431	2.0032854	A	1.095403	A	1.87628944270654	0	lncRNA	41591-1_{1..1673}	n410741|NR_038190_6|lncRNA|Homosapiens||RefGeneNoncode|NR_038190_6||-1.0547200|-0.2547771	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410741|NR_038190_6|lncRNA|Homosapiens||RefGeneNoncode|NR_038190_6||-1.0547200|-0.2547771	chr6	  3528571	  3530243	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11138_PI429285431	1.1440635	A	1.5798051	A	0.739313621673579	0	lncRNA	12695-1_{1..473}	lnc-CTD-2523D13.1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2523D13.1.1-4:1	chr11	119804278	119804750	+	lnc-CTD-2523D13.1.1-4	lnc-CTD-2523D13.1.1-4:1	XLOC_009301	linc-OAF-4	NA	NA	NA	inter
CUST_46724_PI429285431	3.98795	P	3.65313	P	1.26122004101355	0	lncRNA	50879-1_{1..3000}	"gi|384367971|ref|NR_047571.1| Homo sapiens ankyrin repeat and FYVE domain containing 1 (ANKFY1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384367971|ref|NR_047571.1| Homo sapiens ankyrin repeat and FYVE domain containing 1 (ANKFY1), transcript variant 4, non-coding RNA"	Chr17	  4066665	  4069664	-	51479	NR_047571.1	NA	NA	NA	NA	NA	inter
CUST_8074_PI429285431	1.3044292	A	0.92776835	A	1.29833335352269	0	lncRNA	9679-3_{6001..6550}	lnc-INADL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-INADL-2:1	chr1	 61599091	 61599640	+	lnc-INADL-2	lnc-INADL-2:1	ENSG00000248141	ENST00000514954	NFIA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30chr1:61583091-61607315"	NA	inner
CUST_44127_PI429285431	8.799856	P	7.456432	P	2.53752845448851	0	lncRNA	48791-2_{3001..3805}	"gi|374532809|ref|NR_046251.1| Homo sapiens FGD5 antisense RNA 1 (FGD5-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|374532809|ref|NR_046251.1| Homo sapiens FGD5 antisense RNA 1 (FGD5-AS1), transcript variant 1, non-coding RNA"	Chr3	 14987286	 14988090	-	100505641	NR_046251.1	NA	NA	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
CUST_531_PI429285431	0.9071985	A	0.9085303	A	0.9990772925415	0	lncRNA	523-1_{1..621}	"transcript_id ""ENST00000430519.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430519.1"" | genecode_v17"	chr1	196014126	196014746	-	ENSG00000227421.1	ENST00000430519.1	RP11-476B1.1	RP11-476B1.1-001	NA	NA	NA	inter
LNCA_21_P0009130	8.557859	P	8.463875	P	1.06731350108882	0	lncRNA	TCONS_00025037	NA	NA	NA	NA	XLOC_011984	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011984), lincRNA [TCONS_00025037]"	chr16:66585321-66585262	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00025037	TCONS_00025037	chr16	 66585262	 66585321	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8511_PI429285431	2.0436	A	1.5625092	A	1.39579860980122	0	lncRNA	10074-1_{1..903}	lnc-OSBPL6-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OSBPL6-2:5	chr2	179303594	179304496	+	lnc-OSBPL6-2	lnc-OSBPL6-2:5	ENSG00000223960	AC009948.5	PRKRA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60chr2:179296141-179313866"	NA	inner
LNCA_21_P0006832	0.9232569	A	0.9213047	A	1.00135407786258	0	lncRNA	TCONS_00018117	NA	NA	NA	NA	XLOC_008377	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008377), lincRNA [TCONS_00018117]"	chr10:7186733-7186792	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018117	TCONS_00018117	chr10	  7186733	  7186792	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001335	0.9224713	A	0.91880846	A	1.00254211292232	0	lncRNA	TCONS_00001018	NA	NA	NA	NA	XLOC_000283	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000283), lincRNA [TCONS_00001018]"	chr1:89512820-89512879	hs|1p22.2	Agilent_HUMAN_G3V2	TCONS_00001018	TCONS_00001018	chr1	 89512820	 89512879	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36172_PI429285431	2.5321107	A	2.9828367	A	0.73167455849217	0	lncRNA	37444-1_{1..3000}	n344732|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_281|NULL|-1.3146300|-0.2501053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n344732|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_281|NULL|-1.3146300|-0.2501053	chr21	 40969030	 40972029	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
CUST_4993_PI429285431	0.9086623	A	0.90147644	A	1.00499328369574	0	lncRNA	4937-1_{1..668}	"transcript_id ""ENST00000553623.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553623.1"" | genecode_v17"	chr14	101123695	101124362	+	ENSG00000196273.3	ENST00000553623.1	LINC00523	LINC00523-003	NA	NA	NA	inter
CUST_27262_PI429285431	0.90883017	A	0.9134065	A	0.99683295546262	0	lncRNA	28815-1_{1..402}	n324408|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041919|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041919|0.6247610|-0.2723522	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324408|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041919|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041919|0.6247610|-0.2723522	chr6	114951307	114951708	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40"	NA	inter
CUST_8266_PI429285431	0.9065511	A	0.91237104	A	0.995974050947963	0	lncRNA	9853-2_{3001..4156}	lnc-WDR27-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR27-1:9	chr6	169826265	169827420	-	lnc-WDR27-1	lnc-WDR27-1:9	ENSG00000245454	XLOC_005939	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50"	NA	inter
CUST_481_PI429285431	1.409658	A	0.91963536	A	1.40446691565674	0	lncRNA	472-1_{1..658}	"transcript_id ""ENST00000452366.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452366.1"" | genecode_v17"	chr1	172876040	172876697	+	ENSG00000224000.1	ENST00000452366.1	RP3-471M13.2	RP3-471M13.2-001	NA	NA	NA	inter
CUST_19125_PI429285431	5.797676	P	5.1049967	P	1.616282410539	0	lncRNA	20805-1_{1..865}	lnc-FAM83B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM83B-2:1	NA	NA	      864	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003727	10.469487	P	9.973936	P	1.40985911149718	0	lncRNA	TCONS_00008446	NA	NA	NA	NA	XLOC_003904	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003904), lincRNA [TCONS_00008446]"	chr4:22346807-22346156	hs|4p15.2	Agilent_HUMAN_G3V2	TCONS_00008446	TCONS_00008446	chr4	 22346156	 22346807	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44170_PI429285431	0.9097902	A	0.89781964	A	1.00833187840924	0	lncRNA	48829-1_{1..3000}	"gi|222418777|ref|NR_026701.1| Homo sapiens glycerate kinase (GLYCTK), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|222418777|ref|NR_026701.1| Homo sapiens glycerate kinase (GLYCTK), transcript variant 5, non-coding RNA"	Chr3	 52321836	 52324835	+	132158	NR_026701.1	NA	NA	NA	NA	NA	inter
CUST_50748_PI429285431	1.0211354	A	1.497069	A	0.719001357679883	0	lncRNA	54415-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00003843 range=chr10:134309449-134331794 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003843 range=chr10:134309449-134331794 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	134312449	134315448	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
LNCA_21_P0005646	3.6324048	P	3.979236	P	0.786309287495835	0	lncRNA	TCONS_00014579	NA	NA	NA	NA	XLOC_006689	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006689), lincRNA [TCONS_00014579]"	chr8:1983752-1983811	hs|8p23.3	Agilent_HUMAN_G3V2	TCONS_00014579	TCONS_00014579	chr8	  1983752	  1983811	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32838_PI429285431	0.93424076	A	0.9498387	A	0.989246567885246	0	lncRNA	34472-1_{1..220}	n339493|U17635|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1933|NULL|-1.3808100|-0.3917426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339493|U17635|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1933|NULL|-1.3808100|-0.3917426	chr21	 38828196	 38828415	-	NA	NA	NA	NA	DYRK1A	NA	chr21:38818196-38838412	inner
LNCA_33_P3418371	9.051186	P	9.379467	P	0.796484946332587	0	lncRNA	XR_109553	XR_109553	XR_109553	100129831	Hs.635444	LOC100129831	EPWW6493	NA	THC2567347	NA	"PREDICTED: Homo sapiens EPWW6493 (LOC100129831), miscRNA [XR_109553]"	chr19:2294966-2295025	hs|19p13.3	Agilent_HUMAN_G3V2	XR_109553	XR_109553	chr19	  2294966	  2295025	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22866_PI429285431	2.4428113	A	1.7286357	A	1.64054549193475	0	lncRNA	24443-1_{1..297}	lnc-PRH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRH1-1:1	chr12	 11049417	 11049713	-	lnc-PRH1-1	lnc-PRH1-1:1	ENSG00000256419.1	RP11-144O23.18	NA	NA	NA	inter
CUST_19971_PI429285431	0.90812045	A	0.9556408	A	0.967597971549234	0	lncRNA	21624-2_{3001..3815}	lnc-FTSJD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-FTSJD2-1:1	chr6	 37511803	 37512617	+	lnc-FTSJD2-1	lnc-FTSJD2-1:1	ENSG00000204110.5	RP1-153P14.8	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-60.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
CUST_51779_PI429285431	10.096529	P	10.221018	P	0.917328901923456	0	lncRNA	55329-1_{1..427}	hg19_lincRNAsTranscripts_TCONS_l2_00012837 range=chr19:9293020-9293791 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012837 range=chr19:9293020-9293791 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	  9293020	  9293446	-	NA	NA	NA	NA	OR7D4	NA	chr19:9302105-9303791	inter
CUST_44569_PI429285431	4.864726	P	5.790182	P	0.526514073678316	0	lncRNA	49151-1_{1..2740}	"gi|300796445|ref|NR_034121.1| Homo sapiens uncharacterized LOC100131067 (LOC100131067), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300796445|ref|NR_034121.1| Homo sapiens uncharacterized LOC100131067 (LOC100131067), transcript variant 1, non-coding RNA"	Chr5	 80533384	 80536123	-	100131067	NR_034121.1	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90"	NA	inter
CUST_6967_PI429285431	4.56282	P	4.8564873	P	0.815825609245851	0	lncRNA	6915-1_{1..770}	"transcript_id ""ENST00000440477.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440477.1"" | genecode_v17"	chr22	 27853208	 27853977	-	ENSG00000227880.1	ENST00000440477.1	RP11-46E17.6	RP11-46E17.6-001	NA	NA	NA	inter
CUST_22452_PI429285431	4.2833343	P	2.2784407	A	4.01359097733609	0	lncRNA	24039-1_{1..459}	lnc-CEMP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CEMP1-2:1	chr16	  2621911	  2622369	-	lnc-CEMP1-2	lnc-CEMP1-2:1	ENSG00000261140.1	RP11-20I23.6	PDPK1	NA	chr16:2611911-2631937	inner
CUST_39511_PI429285431	3.6145642	P	3.0735729	A	1.45497190957411	0	lncRNA	40457-1_{1..1505}	n387296|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011bsy.1||-1.0658400|-0.1878029	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387296|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011bsy.1||-1.0658400|-0.1878029	chr3	195370804	195372308	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38311_PI429285431	7.236691	P	6.9427595	P	1.22597664858658	0	lncRNA	39361-1_{1..3000}	n381996|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uqu.2||0.0221923|-0.4414546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381996|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uqu.2||0.0221923|-0.4414546	chr13	 26963891	 26966890	+	NA	NA	NA	NA	CDK8	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-24.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chr13:26953891-26977368"	NA	inner
CUST_19438_PI429285431	2.103948	A	2.6729293	A	0.674092603300646	0	lncRNA	21098-1_{1..596}	lnc-FAM165A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FAM165A-1:1	chr6	 86270792	 86271387	-	lnc-FAM165A-1	lnc-FAM165A-1:1	ENSG00000223998.1	RP11-321N4.3	SNX14	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50chr6:86260792-86280928"	NA	inner
CUST_26173_PI429285431	11.10069	P	10.678321	P	1.34012632446181	0	lncRNA	27684-1_{1..299}	lnc-FAM83H-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM83H-1:1	chr8	144800953	144801251	-	lnc-FAM83H-1	lnc-FAM83H-1:1	ENSG00000254548.1	RP11-429J17.5	MAPK15	"hg19_refFlat_MAPK15:range=chr8:144798548-1448044215'pad=0,hg19_refFlat_MAPK15:range=chr8:144798548-1448044215'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.20chr8:144798507-144804633"	NA	inner
CUST_44413_PI429285431	10.81819	P	10.960692	P	0.905946650324799	0	lncRNA	49027-1_{1..3000}	"gi|372622369|ref|NR_045756.2| Homo sapiens collagen, type XXV, alpha 1 (COL25A1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372622369|ref|NR_045756.2| Homo sapiens collagen, type XXV, alpha 1 (COL25A1), transcript variant 4, non-coding RNA"	Chr4	109731877	109734876	-	84570	NR_045756.2	NA	NA	NA	NA	NA	inter
CUST_16088_PI429285431	0.9062676	A	0.912385	A	0.995768718640944	0	lncRNA	17791-1_{1..1623}	lnc-EFHA1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-EFHA1-2:1	chr13	 22449849	 22451471	-	lnc-EFHA1-2	lnc-EFHA1-2:1	XLOC_010530	linc-EFHA1-3	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90"	NA	inter
CUST_27387_PI429285431	0.8919034	A	0.88546145	A	1.00447520342695	0	lncRNA	28949-1_{1..851}	n324549|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256179|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256179|-0.1902110|-0.2332949	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324549|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256179|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256179|-0.1902110|-0.2332949	chr6	 30592021	 30592871	+	NA	NA	NA	NA	ATAT1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30chr6:30594613-30604973"	NA	inner
CUST_22504_PI429285431	4.9965987	P	4.998297	P	0.998823520738251	0	lncRNA	24091-1_{1..1050}	lnc-NBPF11-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-NBPF11-1:2	chr1	146158981	146160030	-	lnc-NBPF11-1	lnc-NBPF11-1:2	ENSG00000227733.2	RP4-565E6.1	NA	NA	NA	inter
CUST_26064_PI429285431	0.91261697	A	1.0871474	A	0.886055866631226	0	lncRNA	27577-1_{1..566}	lnc-SLC38A8-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC38A8-5:1	chr16	 83751412	 83751977	-	lnc-SLC38A8-5	lnc-SLC38A8-5:1	ENSG00000261103.1	RP11-298D21.3	CDH13	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00chr16:83741412-83761503"	NA	inner
CUST_26235_PI429285431	3.642441	P	2.3800836	A	2.39887402896608	0	lncRNA	27742-1_{1..849}	lnc-TKT-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TKT-1:2	chr3	 53381449	 53382297	-	lnc-TKT-1	lnc-TKT-1:2	ENSG00000162290.11	DCP1A	DCP1A	NA	chr3:53371449-53381654	inner
CUST_10991_PI429285431	4.8806386	P	5.356345	P	0.719114597115451	0	lncRNA	12535-1_{1..456}	lnc-CENPP-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CENPP-3:8	chr9	 94910204	 94910659	+	lnc-CENPP-3	lnc-CENPP-3:8	XLOC_007458	linc-CENPP-4	NA	NA	NA	inter
CUST_24585_PI429285431	1.7014476	A	1.2994534	A	1.3213330935534	0	lncRNA	26134-1_{1..484}	lnc-HDDC2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HDDC2-3:1	chr6	125330320	125330803	-	lnc-HDDC2-3	lnc-HDDC2-3:1	ENSG00000229819.1	RP11-510H23.3	RNF217	NA	chr6:125320320-125340635	inner
CUST_32713_PI429285431	1.5523278	A	1.8711247	A	0.801738188708104	0	lncRNA	34356-1_{1..210}	n339344|AB189435|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1776|NULL|0.1613660|-0.1387069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339344|AB189435|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1776|NULL|0.1613660|-0.1387069	chr3	 46063331	 46063540	-	NA	NA	NA	NA	XCR1	NA	chr3:46062291-46068979	inner
CUST_9397_PI429285431	1.8689481	A	1.2902049	A	1.49354758168788	0	lncRNA	10901-1_{1..3000}	lnc-BANP-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BANP-1:3	chr16	 88218779	 88221778	+	lnc-BANP-1	lnc-BANP-1:3	XLOC_011826	linc-ZNF469-3	NA	NA	NA	inter
CUST_49872_PI429285431	7.116371	P	7.2553253	P	0.90817718543669	0	lncRNA	53624-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026039 range=chr7:76597089-76636346 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026039 range=chr7:76597089-76636346 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 76597089	 76600088	+	NA	NA	NA	NA	NA	"hg19_refFlat_FDPS:range=chr1:155287765-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155287765-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_FDPS:range=chr1:155279581-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155279581-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_FDPS:range=chr1:155279856-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155279856-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80"	NA	inter
CUST_40471_PI429285431	5.367772	P	4.8032374	P	1.47891034956764	0	lncRNA	41240-1_{1..587}	n409402|NR_033799_3|lncRNA|Homosapiens||RefGeneNoncode|NR_033799_3||3.3788500|-0.0892107	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409402|NR_033799_3|lncRNA|Homosapiens||RefGeneNoncode|NR_033799_3||3.3788500|-0.0892107	chr17	 44450178	 44450764	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49731_PI429285431	10.344078	P	10.490312	P	0.903606153163118	0	lncRNA	53504-1_{1..717}	hg19_lincRNAsTranscripts_TCONS_l2_00025783 range=chr7:32511483-32512531 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025783 range=chr7:32511483-32512531 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 32511483	 32512199	+	NA	NA	NA	NA	LSM5	NA	chr7:32511041-32522531	inter
CUST_30476_PI429285431	6.3794284	P	6.736104	P	0.780962077613122	0	lncRNA	32256-1_{1..696}	n335622|CR601409|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000280604|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000280604|4.2554000|-0.1519507	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335622|CR601409|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000280604|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000280604|4.2554000|-0.1519507	chr11	 47437351	 47438046	-	NA	NA	NA	NA	SLC39A13	NA	chr11:47430046-47438051	inner
CUST_10268_PI429285431	2.1152418	A	1.8501059	A	1.20174924741426	0	lncRNA	11793-1_{1..914}	lnc-MAPK8IP2-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAPK8IP2-1:12	chr22	 51033620	 51034533	+	lnc-MAPK8IP2-1	lnc-MAPK8IP2-1:12	XLOC_014288	linc-MAPK8IP2	MAPK8IP2	NA	chr22:51039131-51043971	inter
CUST_35608_PI429285431	5.230545	P	5.3838215	P	0.899205958138375	0	lncRNA	37021-1_{1..942}	n342745|AB126070|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5248|NULL|1.0058400|-0.0282685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342745|AB126070|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5248|NULL|1.0058400|-0.0282685	chr11	  1605571	  1606512	-	NA	NA	NA	NA	KRTAP5-1	NA	chr11:1605572-1606513	inner
CUST_1724_PI429285431	0.8993733	A	0.8925251	A	1.00475809447417	0	lncRNA	1710-1_{1..575}	"transcript_id ""ENST00000512268.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512268.1"" | genecode_v17"	chr4	 29216020	 29216594	+	ENSG00000248338.1	ENST00000512268.1	RP11-472K22.2	RP11-472K22.2-001	NA	NA	NA	inter
CUST_6629_PI429285431	0.9142164	A	0.911575	A	1.00183255604497	0	lncRNA	6575-1_{1..515}	"transcript_id ""ENST00000599273.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599273.1"" | genecode_v17"	chr20	  5407541	  5408055	-	ENSG00000226995.2	ENST00000599273.1	LINC00658	LINC00658-005	NA	NA	NA	inter
CUST_29449_PI429285431	0.9181986	A	0.91558784	A	1.00181127932142	0	lncRNA	31206-1_{1..660}	n332851|AF075065|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066087|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066087|-1.1933300|-0.4481609	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n332851|AF075065|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066087|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066087|-1.1933300|-0.4481609	chr8	 71032113	 71032772	-	NA	NA	NA	NA	NCOA2	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20chr8:71024267-71047863"	NA	inner
CUST_26320_PI429285431	9.098134	P	9.635307	P	0.689119936086473	0	lncRNA	27827-1_{1..607}	lnc-C11orf55-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf55-1:1	chr11	 35940131	 35940737	-	lnc-C11orf55-1	lnc-C11orf55-1:1	ENSG00000254919.1	RP11-698N11.2	NA	NA	NA	inter
CUST_44926_PI429285431	0.8928564	A	0.88715625	A	1.00395885856122	0	lncRNA	49440-2_{3001..3516}	"gi|338827734|ref|NR_040085.1| Homo sapiens uncharacterized LOC100506776 (LOC100506776), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338827734|ref|NR_040085.1| Homo sapiens uncharacterized LOC100506776 (LOC100506776), non-coding RNA"	Chr7	 38384178	 38384693	+	100506776	NR_040085.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.54;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80"	NA	inter
CUST_47370_PI429285431	0.9271307	A	0.914204	A	1.00900036756613	0	lncRNA	51419-1_{1..3000}	"gi|241982798|ref|NR_027873.1| Homo sapiens GC-rich sequence DNA-binding factor 1 (GCFC1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|241982798|ref|NR_027873.1| Homo sapiens GC-rich sequence DNA-binding factor 1 (GCFC1), transcript variant 3, non-coding RNA"	Chr21	 34106210	 34109209	-	94104	NR_027873.1	NA	NA	NA	NA	NA	inter
CUST_13929_PI429285431	1.621728	A	2.354378	A	0.601797492273902	0	lncRNA	15576-1_{1..365}	lnc-PLAT-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLAT-2:1	chr8	 41998629	 41998993	-	lnc-PLAT-2	lnc-PLAT-2:1	XLOC_007069	linc-MYST3-1	AP3M2	NA	chr8:41988629-42008755	inter
CUST_20805_PI429285431	1.3056885	A	1.395672	A	0.939533494529946	0	lncRNA	22436-1_{1..422}	lnc-TFDP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TFDP2-2:1	chr3	141085886	141086307	-	lnc-TFDP2-2	lnc-TFDP2-2:1	ENSG00000249417.1	RP11-438D8.2	ZBTB38	NA	chr3:141075886-141095979	inner
CUST_15188_PI429285431	6.7002115	P	6.708268	P	0.99443122318389	0	lncRNA	16854-1_{1..406}	lnc-DDX20-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DDX20-4:1	chr1	112550530	112550935	+	lnc-DDX20-4	lnc-DDX20-4:1	XLOC_000346	linc-CTTNBP2NL	NA	NA	NA	inter
CUST_2019_PI429285431	0.922753	A	1.0682846	A	0.904046195912599	0	lncRNA	2010-1_{1..426}	"transcript_id ""ENST00000509212.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509212.1"" | genecode_v17"	chr4	188571621	188572046	+	ENSG00000249642.1	ENST00000509212.1	RP11-565A3.1	RP11-565A3.1-001	NA	NA	NA	inter
LNCA_21_P0014288	0.91620743	A	0.90538466	A	1.00752998130128	0	lncRNA	XR_109155	XR_109155	XR_109155	NA	Hs.655994	ANKRD10-IT1	ANKRD10 intronic transcript 1 (non-protein coding)	NA	THC2520968	NA	"PREDICTED: Homo sapiens ANKRD10 intronic transcript 1 (non-protein coding) (ANKRD10-IT1), miscRNA [XR_109155]"	chr13:111552507-111552448	hs|13q34	Agilent_HUMAN_G3V2	XR_109155	XR_109155	chr13	111552448	111552507	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20989_PI429285431	6.7636347	P	6.7036915	P	1.04242471897992	0	lncRNA	22618-1_{1..1058}	lnc-TNFRSF13B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNFRSF13B-4:1	chr17	 16980370	 16981427	-	lnc-TNFRSF13B-4	lnc-TNFRSF13B-4:1	ENSG00000225442.2	MPRIP-AS1	MPRIP	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-60.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80chr17:16970370-16991066"	NA	inner
CUST_36530_PI429285431	0.89861715	A	0.8950878	A	1.00244935377949	0	lncRNA	37730-1_{1..3000}	n345032|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_581|NULL|-1.3101600|-0.2376865	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345032|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_581|NULL|-1.3101600|-0.2376865	chr8	142278106	142281105	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010058	4.3945274	P	4.95599	P	0.677614851436654	0	lncRNA	TCONS_00028442	NA	NA	NA	NA	XLOC_013793	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013793), lincRNA [TCONS_00028442]"	chr20:49947932-49947873	hs|20q13.2	Agilent_HUMAN_G3V2	TCONS_00028442	TCONS_00028442	chr20	 49947873	 49947932	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42394_PI429285431	9.231197	P	9.313626	P	0.944466152648965	0	lncRNA	45088-1_{1..84}	ENST00000516882 ncrna:snoRNA chromosome:GRCh37:1:26332707:26332790:1 gene:ENSG00000252691 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516882 ncrna:snoRNA chromosome:GRCh37:1:26332707:26332790:1 gene:ENSG00000252691 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 26332707	 26332790	+	ENSG00000252691	ENST00000516882	NA	NA	PAFAH2	NA	chr1:26322707-26324648	inter
CUST_27820_PI429285431	3.871233	P	4.234403	P	0.777454419127266	0	lncRNA	29406-1_{1..677}	n325048|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078206|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078206|-0.9356840|-0.1693070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325048|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078206|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078206|-0.9356840|-0.1693070	chr20	 19728216	 19728892	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16206_PI429285431	0.9120581	A	0.9062333	A	1.00404560515324	0	lncRNA	17912-1_{1..471}	lnc-SOX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOX1-2:1	chr13	112762026	112762496	+	lnc-SOX1-2	lnc-SOX1-2:1	XLOC_010504	linc-C13orf28-4	NA	NA	NA	inter
CUST_50428_PI429285431	1.9302453	A	2.1381133	A	0.865815780080942	0	lncRNA	54132-1_{1..275}	hg19_lincRNAsTranscripts_TCONS_l2_00030175 range=chrX:36737877-36739249 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030175 range=chrX:36737877-36739249 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 36737877	 36738151	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12024_PI429285431	5.7960877	P	6.114418	P	0.801997530793226	0	lncRNA	13606-1_{1..2244}	lnc-ERC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ERC1-1:1	chr12	  1611633	  1613876	+	lnc-ERC1-1	lnc-ERC1-1:1	XLOC_009615	linc-WNT5B	ERC1	NA	chr12:1601633-1605099	inter
CUST_24510_PI429285431	0.9605343	A	1.3861394	A	0.744526394304028	0	lncRNA	26061-1_{1..516}	lnc-CXorf28-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CXorf28-2:1	chrX	  3585975	  3586490	+	lnc-CXorf28-2	lnc-CXorf28-2:1	ENSG00000236188.1	PRKX-AS1	PRKX	NA	chrX:3575975-3596233	inner
CUST_2263_PI429285431	2.8718781	A	2.9379742	P	0.955219305725855	0	lncRNA	2255-1_{1..730}	"transcript_id ""ENST00000503489.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503489.1"" | genecode_v17"	chr5	 92011663	 92012392	-	ENSG00000249984.1	ENST00000503489.1	CTC-529L17.2	CTC-529L17.2-001	NA	NA	NA	inter
CUST_26325_PI429285431	6.9961095	P	6.9246893	P	1.0507505415167	0	lncRNA	27832-1_{1..566}	lnc-AC012652.1.1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC012652.1.1-1:10	chr15	 41577423	 41577988	+	lnc-AC012652.1.1-1	lnc-AC012652.1.1-1:10	ENSG00000247556.2	OIP5-AS1	CHP	"hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.60chr15:41567423-41574085"	NA	inter
CUST_21677_PI429285431	0.92981815	A	0.9090558	A	1.01449541861008	0	lncRNA	23287-1_{1..433}	lnc-CRNKL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CRNKL1-1:1	chr20	 20076231	 20076663	-	lnc-CRNKL1-1	lnc-CRNKL1-1:1	ENSG00000241054.1	RP5-1002M8.4	C20orf26	NA	chr20:20066231-20086328	inner
LNCA_21_P0005649	3.923266	P	4.1421194	P	0.85924806332678	0	lncRNA	TCONS_00014594	NA	NA	NA	NA	XLOC_006699	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006699), lincRNA [TCONS_00014594]"	chr8:8780210-8784509	hs|8p23.1	Agilent_HUMAN_G3V2	TCONS_00014594	TCONS_00014594	chr8	  8780210	  8784509	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004710	0.92510766	A	0.91341645	A	1.00813665333858	0	lncRNA	ENST00000446811	NA	AK055794	NA	Hs.571211	XLOC_005545	NA	ENST00000446811	THC2517985	NA	"BROAD Institute lincRNA (XLOC_005545), lincRNA [TCONS_00011418]"	chr6:168662912-168662971	hs|6q27	Agilent_HUMAN_G3V2	ENST00000446811	ENST00000446811	chr6	168662912	168662971	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010117	0.9254321	A	0.91366905	A	1.00818685545224	0	lncRNA	AK309387	NA	AK309387	NA	NA	XLOC_013704	NA	NA	THC2648275	NA	"BROAD Institute lincRNA (XLOC_013704), lincRNA [TCONS_00028643]"	chr20:25124043-25123984	hs|20p11.21	Agilent_HUMAN_G3V2	AK309387	AK309387	chr20	 25123984	 25124043	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47919_PI429285431	0.90459	A	0.8950759	A	1.00661646431621	0	lncRNA	51810-1_{1..1392}	"gi|410172096|ref|XR_171595.1| PREDICTED: Homo sapiens uncharacterized LOC100506389 (LOC100506389), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410172096|ref|XR_171595.1| PREDICTED: Homo sapiens uncharacterized LOC100506389 (LOC100506389), misc_RNA"	NA	NA	NA	NA	NA	XR_171595.1	NA	NA	NA	NA	NA	Unknown
CUST_35153_PI429285431	0.9138851	A	1.1355793	A	0.857557789099898	0	lncRNA	36555-1_{1..2673}	n342125|BC035400|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4608|NULL|-0.8596450|-0.2960558	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342125|BC035400|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4608|NULL|-0.8596450|-0.2960558	chr6	129800757	129803429	-	NA	NA	NA	NA	LAMA2	"hg19_refFlat_LAMA2:range=chr6:129204391-1298374925'pad=0,hg19_refFlat_LAMA2:range=chr6:129204391-1298374925'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80chr6:129790757-129837711"	NA	inner
CUST_20372_PI429285431	7.606712	P	7.785147	P	0.883661050274154	0	lncRNA	22014-1_{1..773}	lnc-C16orf46-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf46-1:1	chr16	 81121206	 81121978	-	lnc-C16orf46-1	lnc-C16orf46-1:1	ENSG00000260643.1	RP11-303E16.8	GCSH	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr16:81115552-81129980"	NA	inner
LNCA_21_P0008512	0.9278808	A	0.91440874	A	1.00938185668389	0	lncRNA	TCONS_00022980	NA	NA	NA	NA	XLOC_010816	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010816), lincRNA [TCONS_00022980]"	chr14:46241412-46241659	hs|14q21.2	Agilent_HUMAN_G3V2	TCONS_00022980	TCONS_00022980	chr14	 46241412	 46241659	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24500_PI429285431	6.6048126	P	4.5359263	P	4.19562663643344	0	lncRNA	26051-2_{3001..5069}	lnc-CDH3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CDH3-4:1	chr16	 68598964	 68601032	+	lnc-CDH3-4	lnc-CDH3-4:1	ENSG00000262820.1	RP11-615I2.7	ZFP90	NA	chr16:68585964-68601039	inner
CUST_28694_PI429285431	1.6503874	A	1.7993735	A	0.901884067764132	0	lncRNA	30392-1_{1..917}	n326081|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046668|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046668|-0.2979710|-0.2146077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326081|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046668|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046668|-0.2979710|-0.2146077	chr10	  6819349	  6820265	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40316_PI429285431	0.9256963	A	0.8996383	A	1.01822613421508	0	lncRNA	41119-1_{1..657}	n408355|NR_029448|lncRNA|Homosapiens||RefGeneNoncode|NR_029448||3.1013600|-0.1837555	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408355|NR_029448|lncRNA|Homosapiens||RefGeneNoncode|NR_029448||3.1013600|-0.1837555	chr12	 49121217	 49121873	+	NA	NA	NA	NA	ADCY6	NA	chr12:49159975-49169568	inter
CUST_28880_PI429285431	2.6653574	A	1.9147345	A	1.68251912047943	0	lncRNA	30595-1_{1..424}	n326302|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086170|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086170|-1.0559600|-0.4042373	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326302|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086170|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086170|-1.0559600|-0.4042373	chr1	185679382	185679805	+	NA	NA	NA	NA	HMCN1	NA	chr1:185703683-185722977	inner
CUST_11062_PI429285431	2.8150318	A	2.2033744	A	1.52801361688508	0	lncRNA	12613-1_{1..960}	lnc-VPS13D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-VPS13D-1:1	chr1	 12588092	 12589051	+	lnc-VPS13D-1	lnc-VPS13D-1:1	XLOC_000055	linc-AADACL4	NA	NA	NA	inter
CUST_17472_PI429285431	0.8989355	A	0.9033849	A	0.996920661852158	0	lncRNA	19198-1_{1..484}	lnc-LRRC28-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC28-1:1	chr15	 99946080	 99946563	+	lnc-LRRC28-1	lnc-LRRC28-1:1	XLOC_011382	linc-MEF2A	NA	NA	NA	inter
CUST_14179_PI429285431	6.115541	P	6.2540145	P	0.908479899694968	0	lncRNA	15831-1_{1..782}	lnc-PCYOX1L-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCYOX1L-2:5	chr5	148804660	148805441	+	lnc-PCYOX1L-2	lnc-PCYOX1L-2:5	XLOC_004598	linc-ARHGEF37-2	NA	NA	NA	inter
CUST_27878_PI429285431	6.597555	P	6.760042	P	0.893483504761816	0	lncRNA	29471-1_{1..787}	n325114|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330940|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330940|-1.0879100|-0.2933547	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325114|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330940|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330940|-1.0879100|-0.2933547	chr2	224078437	224079223	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22406_PI429285431	7.6048346	P	7.659209	P	0.963011946213683	0	lncRNA	23995-1_{1..554}	lnc-ZNF609-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF609-1:1	chr15	 64987240	 64987793	+	lnc-ZNF609-1	lnc-ZNF609-1:1	ENSG00000265967.1	AC100830.4	ZNF609	NA	chr15:64977240-64978267	inner
CUST_14901_PI429285431	0.8958506	A	0.9038803	A	0.994449696252394	0	lncRNA	16564-1_{1..1158}	lnc-PPP1R14C-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP1R14C-1:3	chr6	150615916	150617073	+	lnc-PPP1R14C-1	lnc-PPP1R14C-1:3	XLOC_005502	linc-IYD	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30"	NA	inter
CUST_18284_PI429285431	5.5430517	P	5.7713003	P	0.853670600281213	0	lncRNA	20015-1_{1..211}	lnc-SPTLC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>lnc-SPTLC1-2:1	chr9	 94919637	 94919847	-	lnc-SPTLC1-2	lnc-SPTLC1-2:1	ENSG00000236717	RP11-100G15.10	NA	NA	NA	inter
CUST_23764_PI429285431	0.9065811	A	0.9079131	A	0.999077154039988	0	lncRNA	25327-1_{1..459}	lnc-IRX3-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IRX3-4:7	chr16	 54962682	 54963140	-	lnc-IRX3-4	lnc-IRX3-4:7	ENSG00000245694.4	CRNDE	IRX5	NA	chr16:54965111-54968397	inter
CUST_9511_PI429285431	2.3476255	A	1.3983254	A	1.93093566859762	0	lncRNA	11020-1_{1..934}	lnc-SREK1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SREK1-1:4	chr5	 65622428	 65623361	+	lnc-SREK1-1	lnc-SREK1-1:4	XLOC_004408	linc-MAST4-2	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70"	NA	inter
LNCA_21_P0013552	0.92255175	A	0.92454934	A	0.998616334272948	0	lncRNA	TCONS_l2_00028611	NA	NA	NA	NA	XLOC_l2_014697	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014697), lincRNA [TCONS_l2_00028611]"	chr9:6670783-6670842	hs|9p24.1	Agilent_HUMAN_G3V2	TCONS_l2_00028611	TCONS_l2_00028611	chr9	  6670783	  6670842	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1791_PI429285431	0.9034037	A	0.91130644	A	0.99453721363159	0	lncRNA	1777-1_{1..2079}	"transcript_id ""ENST00000381217.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000381217.2"" | genecode_v17"	chr4	 62285964	 62288042	-	ENSG00000205682.2	ENST00000381217.2	RP11-798L4.1	RP11-798L4.1-001	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90"	NA	inter
CUST_12953_PI429285431	0.9047434	A	0.90443075	A	1.00021673594984	0	lncRNA	14581-1_{1..251}	lnc-RCC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RCC2-1:1	chr1	 18335054	 18335304	-	lnc-RCC2-1	lnc-RCC2-1:1	XLOC_000723	linc-RCC2-1	NA	NA	NA	inter
LNCA_21_P0006972	0.9232212	A	0.9236975	A	0.999669908490094	0	lncRNA	TCONS_00018439	NA	NA	NA	NA	XLOC_008731	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008731), lincRNA [TCONS_00018439]"	chr10:10976215-10976156	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018439	TCONS_00018439	chr10	 10976156	 10976215	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38110_PI429285431	4.7569075	P	5.177604	P	0.747063871979673	0	lncRNA	39184-1_{1..2767}	n381186|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ebr.2||-0.8208950|-0.2450113	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381186|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ebr.2||-0.8208950|-0.2450113	chr1	112287938	112290704	-	NA	NA	NA	NA	C1orf183	"hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60chr1:112277938-112298419"	NA	inner
CUST_13137_PI429285431	5.86083	P	5.5659137	P	1.22681379984563	0	lncRNA	14765-1_{1..498}	lnc-GALM-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GALM-2:1	chr2	 38673435	 38673932	+	lnc-GALM-2	lnc-GALM-2:1	XLOC_001436	linc-GALM-1	NA	NA	NA	inter
LNCA_21_P0005109	9.005266	P	9.468658	P	0.72527900890234	0	lncRNA	TCONS_00012428	NA	NA	NA	NA	XLOC_005180	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005180), lincRNA [TCONS_00012428]"	chr6:14432275-14444774	hs|6p23	Agilent_HUMAN_G3V2	TCONS_00012428	TCONS_00012428	chr6	 14432275	 14444774	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38073_PI429285431	2.8060594	A	1.4691575	A	2.52608274993751	0	lncRNA	39150-1_{1..3000}	n381053|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ass.1||0.6167130|-0.2582838	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381053|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ass.1||0.6167130|-0.2582838	chr1	 11782186	 11785185	+	NA	NA	NA	NA	C1orf187	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90chr1:11772186-11780336"	NA	inter
CUST_38008_PI429285431	0.9059025	A	0.8995472	A	1.00441487524936	0	lncRNA	39093-2_{3001..3610}	n377581|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029945||1.5980800|-0.1479720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377581|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029945||1.5980800|-0.1479720	chr6	  1383440	  1384049	+	NA	NA	NA	NA	FOXF2	NA	chr6:1390069-1394050	inter
CUST_30841_PI429285431	4.083827	P	4.5566463	P	0.720555119517607	0	lncRNA	32629-1_{1..317}	n336809|AB231741|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000329981|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000329981|-0.7518250|-0.1742213	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336809|AB231741|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000329981|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000329981|-0.7518250|-0.1742213	chr11	 56569551	 56569867	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1113_PI429285431	3.6148486	P	3.8489542	P	0.850211925383458	0	lncRNA	1102-1_{1..366}	"transcript_id ""ENST00000599358.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599358.1"" | genecode_v17"	chr2	145780795	145781160	+	ENSG00000226674.3	ENST00000599358.1	AC074093.1	AC074093.1-018	NA	NA	NA	inter
CUST_14407_PI429285431	0.90588653	A	0.91547394	A	0.993376546200736	0	lncRNA	16067-2_{3001..6000}	lnc-RP11-210M15.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-210M15.2.1-1:1	chr15	 80699051	 80702050	-	lnc-RP11-210M15.2.1-1	lnc-RP11-210M15.2.1-1:1	XLOC_011546	linc-BCL2A1-3	ARNT2	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30chr15:80696692-80706455"	NA	inter
CUST_31231_PI429285431	0.92701083	A	0.9070828	A	1.01390889886924	0	lncRNA	33021-1_{1..1553}	n337679|BC034566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|61|NULL|-1.0257600|-0.3412838	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337679|BC034566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|61|NULL|-1.0257600|-0.3412838	chr15	 29901879	 29903431	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28849_PI429285431	6.2710695	P	6.44664	P	0.885417320027394	0	lncRNA	30557-1_{1..565}	n326264|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088900|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088900|-1.1749400|-0.3175934	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326264|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088900|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088900|-1.1749400|-0.3175934	chr1	206113762	206114326	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22944_PI429285431	9.37724	P	9.405147	P	0.980842229677106	0	lncRNA	24520-1_{1..577}	lnc-STX16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-STX16-1:1	chr20	 57286234	 57286810	+	lnc-STX16-1	lnc-STX16-1:1	ENSG00000254419.1	RP11-261P9.4	NPEPL1	NA	chr20:57276234-57290900	inner
CUST_47328_PI429285431	8.858416	P	8.816433	P	1.02952795191777	0	lncRNA	51385-1_{1..3000}	"gi|284795360|ref|NR_033263.1| Homo sapiens C20orf166 antisense RNA 1 (C20orf166-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|284795360|ref|NR_033263.1| Homo sapiens C20orf166 antisense RNA 1 (C20orf166-AS1), non-coding RNA"	NW_003571063.2	    86588	    89587	-	253868	NR_033263.1	NA	NA	NA	"hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	Unknown
CUST_8035_PI429285431	5.865813	P	6.325127	P	0.727332022072903	0	lncRNA	9643-1_{1..1951}	lnc-ITGAL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ITGAL-1:1	chr16	 30541404	 30543354	+	lnc-ITGAL-1	lnc-ITGAL-1:1	ENSG00000245600	AC002310.2	ITGAL	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50chr16:30531404-30534506"	NA	inter
CUST_21897_PI429285431	4.9702983	P	5.01146	P	0.971872052611289	0	lncRNA	23506-1_{1..541}	lnc-AGR3-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGR3-1:5	chr7	 17334790	 17335330	-	lnc-AGR3-1	lnc-AGR3-1:5	ENSG00000237773.1	AC003075.4	AHR	NA	chr7:17338276-17344885	inter
CUST_42553_PI429285431	0.91214114	A	0.90800816	A	1.00286887079034	0	lncRNA	45370-1_{1..68}	ENST00000391191 ncrna:snoRNA chromosome:GRCh37:3:52723264:52723331:1 gene:ENSG00000212493 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391191 ncrna:snoRNA chromosome:GRCh37:3:52723264:52723331:1 gene:ENSG00000212493 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	 52723264	 52723331	+	ENSG00000212493	ENST00000391191	NA	NA	PBRM1	NA	chr3:52713264-52719866	inner
CUST_869_PI429285431	1.6854453	A	0.91310436	A	1.70803902760647	0	lncRNA	863-1_{1..561}	"transcript_id ""ENST00000444361.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444361.1"" | genecode_v17"	chr2	 47452933	 47453493	+	ENSG00000226087.1	ENST00000444361.1	AC106869.2	AC106869.2-002	NA	NA	NA	inter
CUST_1915_PI429285431	3.7513235	P	4.100046	P	0.785279151290903	0	lncRNA	1906-1_{1..579}	"transcript_id ""ENST00000515282.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515282.1"" | genecode_v17"	chr4	139230896	139231474	+	ENSG00000251372.1	ENST00000515282.1	LINC00499	LINC00499-001	NA	NA	NA	inter
CUST_1905_PI429285431	0.89538485	A	0.88970876	A	1.0039421155573	0	lncRNA	1896-1_{1..2264}	"transcript_id ""ENST00000507365.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507365.1"" | genecode_v17"	chr4	138466885	138469148	+	ENSG00000251632.1	ENST00000507365.1	RP11-714L20.1	RP11-714L20.1-001	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.52;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_8557_PI429285431	2.8121257	A	2.3827448	A	1.34665556602643	0	lncRNA	10116-1_{1..1863}	lnc-NCL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NCL-2:1	chr2	232264448	232266310	-	lnc-NCL-2	lnc-NCL-2:1	ENSG00000245519	ENST00000500270	B3GNT7	"hg19_refFlat_B3GNT7:range=chr2:232260515-2322636365'pad=0,hg19_refFlat_B3GNT7:range=chr2:232260515-2322636365'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.80chr2:232260335-232265875"	NA	inner
CUST_19086_PI429285431	0.8985799	A	0.89137167	A	1.00500886694336	0	lncRNA	20776-1_{1..3000}	lnc-APBA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-APBA2-1:1	chr15	 28999960	 29002959	+	lnc-APBA2-1	lnc-APBA2-1:1	ENSG00000248334	AC055876.5	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90"	NA	inter
CUST_40746_PI429285431	0.9026303	A	1.1693971	A	0.831180204301821	0	lncRNA	41474-1_{1..2100}	n410456|NR_037599|lncRNA|Homosapiens||RefGeneNoncode|NR_037599||6.6361500|-0.2029779	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410456|NR_037599|lncRNA|Homosapiens||RefGeneNoncode|NR_037599||6.6361500|-0.2029779	chr15	 29034979	 29037078	+	NA	NA	NA	NA	NA	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50"	NA	inter
CUST_45499_PI429285431	8.46368	P	8.042107	P	1.33938712019917	0	lncRNA	49911-1_{1..2817}	"gi|311771679|ref|NR_037164.1| Homo sapiens ankyrin repeat and SOCS box containing 13 (ASB13), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|311771679|ref|NR_037164.1| Homo sapiens ankyrin repeat and SOCS box containing 13 (ASB13), transcript variant 3, non-coding RNA"	Chr10	  5680820	  5683636	-	79754	NR_037164.1	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-62.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10"	NA	inter
CUST_15249_PI429285431	5.3198657	P	5.4129314	P	0.937528400657427	0	lncRNA	16920-1_{1..594}	lnc-DEC1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DEC1-3:2	chr9	118454048	118454641	+	lnc-DEC1-3	lnc-DEC1-3:2	XLOC_007531	linc-PAPPA-4	NA	NA	NA	inter
CUST_50060_PI429285431	0.904857	A	0.88891256	A	1.01111314086312	0	lncRNA	53794-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00027781 range=chr8:58127214-58144454 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027781 range=chr8:58127214-58144454 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 58127214	 58130213	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34601_PI429285431	1.8869314	A	2.9552612	A	0.476870750187738	0	lncRNA	36057-1_{1..3000}	n341483|AL137475|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3953|NULL|0.2343500|-0.3342216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341483|AL137475|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3953|NULL|0.2343500|-0.3342216	chr8	 35529680	 35532679	-	NA	NA	NA	NA	UNC5D	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20chr8:35519680-35577838"	NA	inner
CUST_25928_PI429285431	0.9063994	A	1.2641717	A	0.780368635734436	0	lncRNA	27447-1_{1..342}	lnc-LEFTY2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LEFTY2-1:1	chr1	226125083	226125424	-	lnc-LEFTY2-1	lnc-LEFTY2-1:1	ENSG00000248322.1	RP4-559A3.6	LEFTY2	NA	chr1:226124298-226129083	inner
CUST_8274_PI429285431	3.0298944	A	2.942038	A	1.06278988330875	0	lncRNA	9858-1_{1..542}	lnc-BHLHE41-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BHLHE41-2:2	chr12	 26112259	 26112800	-	lnc-BHLHE41-2	lnc-BHLHE41-2:2	ENSG00000246695	RP11-877E17.2	NA	NA	NA	inner
CUST_39888_PI429285431	2.6708763	A	0.8991873	A	3.41453471116417	0	lncRNA	40776-1_{1..3000}	n406580|NR_024094|lncRNA|Homosapiens||RefGeneNoncode|NR_024094||10.4915000|-0.2550747	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406580|NR_024094|lncRNA|Homosapiens||RefGeneNoncode|NR_024094||10.4915000|-0.2550747	chr9	  6011018	  6014017	-	NA	NA	NA	NA	RANBP6	NA	chr9:6011019-6015640	inner
CUST_6283_PI429285431	0.8923607	A	0.8967108	A	0.996989281779348	0	lncRNA	6207-1_{1..1256}	"transcript_id ""ENST00000575722.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000575722.1"" | genecode_v17"	chr18	 76736555	 76737810	-	ENSG00000263146.2	ENST00000575722.1	RP11-849I19.1	RP11-849I19.1-001	SALL3	NA	chr18:76740275-76748843	inter
CUST_697_PI429285431	1.3390905	A	0.9089559	A	1.34735927640284	0	lncRNA	690-1_{1..755}	"transcript_id ""ENST00000587316.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587316.1"" | genecode_v17"	chr2	  6773921	  6774675	-	ENSG00000236172.2	ENST00000587316.1	AC097517.2	AC097517.2-019	NA	NA	NA	inter
LNCA_32_P192594	9.481799	P	9.646179	P	0.892311909193178	0	lncRNA	XR_110132	XR_110132	XR_110132	   400099	Hs.400432	LOC400099	uncharacterized LOC400099	NA	THC2540984	NA	"PREDICTED: Homo sapiens hypothetical LOC400099 (LOC400099), miscRNA [XR_110132]"	chr13:20439082-20439141	hs|13q12.11	Agilent_HUMAN_G3V2	XR_110132	XR_110132	chr13	 20439082	 20439141	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44381_PI429285431	0.9053993	A	0.9108629	A	0.996220083003929	0	lncRNA	49001-2_{3001..3069}	"gi|193211440|ref|NR_024010.1| Homo sapiens UDP glucuronosyltransferase 2 family, polypeptide A3 (UGT2A3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|193211440|ref|NR_024010.1| Homo sapiens UDP glucuronosyltransferase 2 family, polypeptide A3 (UGT2A3), transcript variant 2, non-coding RNA"	NT_167250.1	   509428	   509496	-	79799	NR_024010.1	NA	NA	NA	NA	NA	Unknown
CUST_36343_PI429285431	1.8311673	A	1.9262748	A	0.936202485278261	0	lncRNA	37572-1_{1..1645}	n344869|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_418|NULL|-1.3008000|-0.2813382	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344869|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_418|NULL|-1.3008000|-0.2813382	chr6	 14701915	 14703559	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10"	NA	inter
CUST_33441_PI429285431	5.681465	P	5.943981	P	0.83363283009116	0	lncRNA	35019-1_{1..1601}	n340175|AK128008|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2636|NULL|-0.5522710|-0.1473613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340175|AK128008|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2636|NULL|-0.5522710|-0.1473613	chr10	133664245	133665845	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14648_PI429285431	6.0389338	P	6.1375923	P	0.933900982232822	0	lncRNA	16318-1_{1..306}	lnc-NPFFR2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NPFFR2-2:1	chr4	 73435617	 73435922	+	lnc-NPFFR2-2	lnc-NPFFR2-2:1	XLOC_003569	linc-ALB-3	ADAMTS3	NA	chr4:73425617-73434516	inter
CUST_35070_PI429285431	4.9207225	P	4.948426	P	0.980980592578603	0	lncRNA	36480-1_{1..1888}	n342021|BC065706|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4502|NULL|12.0301000|-0.3462372	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342021|BC065706|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4502|NULL|12.0301000|-0.3462372	chr12	112688824	112690711	-	NA	NA	NA	NA	C12orf51	NA	chr12:112678824-112721595	inner
CUST_20565_PI429285431	0.90814984	A	1.4709367	A	0.676993149339428	0	lncRNA	22206-1_{1..552}	lnc-C15orf48-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C15orf48-1:6	chr15	 45752644	 45753195	+	lnc-C15orf48-1	lnc-C15orf48-1:6	ENSG00000259354.1	RP11-519G16.3	NA	NA	NA	inter
LNCA_21_P0002965	0.9085924	A	0.89824545	A	1.00719773931383	0	lncRNA	TCONS_00006041	NA	NA	NA	NA	XLOC_002682	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002682), lincRNA [TCONS_00006041]"	chr3:63134413-63134472	hs|3p14.2	Agilent_HUMAN_G3V2	TCONS_00006041	TCONS_00006041	chr3	 63134413	 63134472	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48664_PI429285431	2.529318	A	1.8728195	A	1.57625232657799	0	lncRNA	52508-2_{3001..4409}	hg19_lincRNAsTranscripts_TCONS_l2_00014706 range=chr2:96472869-96486918 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014706 range=chr2:96472869-96486918 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 96475869	 96477277	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00"	NA	inter
CUST_13846_PI429285431	0.91008633	A	1.716557	A	0.571778916967159	0	lncRNA	15489-1_{1..594}	lnc-AL445989.1-11:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL445989.1-11:2	chr13	 66628093	 66628686	+	lnc-AL445989.1-11	lnc-AL445989.1-11:2	XLOC_010416	linc-C13orf34-9	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90"	NA	inter
CUST_31150_PI429285431	8.641699	P	8.789103	P	0.902873641722975	0	lncRNA	32945-1_{1..238}	n337479|EF103920|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394879|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394879|0.6372580|-0.0460593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337479|EF103920|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394879|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394879|0.6372580|-0.0460593	chr22	 19948784	 19949021	+	NA	NA	NA	NA	COMT	NA	chr22:19938784-19957498	inner
CUST_1899_PI429285431	0.8988514	A	0.8902058	A	1.00601066525276	0	lncRNA	1890-1_{1..467}	"transcript_id ""ENST00000504365.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504365.1"" | genecode_v17"	chr4	136788158	136788624	-	ENSG00000248330.1	ENST00000504365.1	LINC00613	LINC00613-002	NA	NA	NA	inter
CUST_32303_PI429285431	9.681576	P	9.085315	P	1.51179340426065	0	lncRNA	33986-1_{1..1528}	n338879|CR592760|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1305|NULL|1.9618600|-0.0970504	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338879|CR592760|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1305|NULL|1.9618600|-0.0970504	chr2	 73143388	 73144915	+	NA	NA	NA	NA	SFXN5	NA	chr2:73169165-73171457	inner
LNCA_21_P0005142	0.9111309	A	0.90070343	A	1.00725395481529	0	lncRNA	TCONS_00012620	NA	NA	NA	NA	XLOC_005516	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005516), lincRNA [TCONS_00012620]"	chr6:158137184-158187424	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_00012620	TCONS_00012620	chr6	158137184	158187424	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31812_PI429285431	0.91375124	A	0.8985926	A	1.01056256271473	0	lncRNA	33549-1_{1..1566}	n338355|BC041451|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|750|NULL|-1.0547000|-0.3180536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338355|BC041451|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|750|NULL|-1.0547000|-0.3180536	chr1	169411875	169413440	-	NA	NA	NA	NA	SLC19A2	NA	chr1:169433147-169439690	inter
CUST_42717_PI429285431	6.657375	P	6.468061	P	1.14022141284371	0	lncRNA	45651-1_{1..145}	ENST00000364446 ncrna:snoRNA chromosome:GRCh37:8:51927581:51927725:1 gene:ENSG00000201316 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364446 ncrna:snoRNA chromosome:GRCh37:8:51927581:51927725:1 gene:ENSG00000201316 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	 51927581	 51927725	+	ENSG00000201316	ENST00000364446	NA	NA	NA	NA	NA	inter
CUST_12112_PI429285431	1.1044704	A	0.9087847	A	1.14526836703252	0	lncRNA	13708-1_{1..1358}	lnc-SLC35F5-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC35F5-4:1	chr2	114729793	114731150	-	lnc-SLC35F5-4	lnc-SLC35F5-4:1	XLOC_002286	linc-SLC35F5-2	NA	NA	NA	inter
CUST_51699_PI429285431	0.89392215	A	0.8903434	A	1.00248367970737	0	lncRNA	55259-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00011771 range=chr18:11638006-11677400 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011771 range=chr18:11638006-11677400 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr18	 11638006	 11641005	+	NA	NA	NA	NA	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NPIPL3:range=chr16:21413605-214364195'pad=0,hg19_refFlat_NPIPL3:range=chr16:21413605-214364195'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LOC100132247:range=chr16:22525123-225477065'pad=0,hg19_refFlat_LOC100132247:range=chr16:22525123-225477065'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ACSM1:range=chr16:20634808-207025105'pad=0,hg19_refFlat_ACSM1:range=chr16:20634808-207025105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60"	NA	inter
LNCA_21_P0003140	1.8131076	A	2.8411572	A	0.490372642643896	0	lncRNA	TCONS_00006567	NA	NA	NA	NA	XLOC_003194	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003194), lincRNA [TCONS_00006567]"	chr3:102387991-102387932	hs|3q12.3	Agilent_HUMAN_G3V2	TCONS_00006567	TCONS_00006567	chr3	102387932	102387991	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17864_PI429285431	2.2302802	A	1.4957273	A	1.66388174240468	0	lncRNA	19601-1_{1..255}	lnc-TIMM21-5:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TIMM21-5:6	chr18	 70548425	 70548679	+	lnc-TIMM21-5	lnc-TIMM21-5:6	XLOC_012713	linc-C18orf55-5	NA	NA	NA	inter
CUST_34052_PI429285431	7.6102943	P	6.972051	P	1.55643281202517	0	lncRNA	35582-2_{3001..3373}	n340870|AK125617|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3335|NULL|2.2915500|-0.2019946	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340870|AK125617|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3335|NULL|2.2915500|-0.2019946	chr17	 74526667	 74527039	+	NA	NA	NA	NA	PRCD	NA	chr17:74523668-74541458	inter
CUST_24686_PI429285431	5.4094534	P	5.533774	P	0.917435984292817	0	lncRNA	26233-1_{1..603}	lnc-SEC14L1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC14L1-1:6	chr17	 75095100	 75095702	+	lnc-SEC14L1-1	lnc-SEC14L1-1:6	ENSG00000234912.3	LINC00338	SEC14L1	NA	chr17:75085100-75105278	inner
CUST_49475_PI429285431	7.2203593	P	7.0122585	P	1.1551664923341	0	lncRNA	53269-1_{1..867}	hg19_lincRNAsTranscripts_TCONS_l2_00024558 range=chr6:1458802-1555410 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024558 range=chr6:1458802-1555410 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	  1458802	  1459668	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38070_PI429285431	5.0497193	P	5.0170164	P	1.0229267926083	0	lncRNA	39147-1_{1..2248}	n381041|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ajc.3||1.3029800|-0.1472968	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n381041|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ajc.3||1.3029800|-0.1472968	chr1	  2281852	  2284099	-	NA	NA	NA	NA	MORN1	"hg19_refFlat_SNRPN:range=chr15:25219601-252235915'pad=0,hg19_refFlat_SNRPN:range=chr15:25219601-252235915'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90chr1:2271852-2294100"	NA	inner
CUST_28098_PI429285431	5.9608645	P	6.4897223	P	0.693103255547599	0	lncRNA	29720-1_{1..506}	n325370|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324297|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324297|-0.7093590|-0.3546571	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325370|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324297|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324297|-0.7093590|-0.3546571	chr2	 23106979	 23107484	-	NA	NA	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
CUST_5_PI429201921	0.8960734	A	1.2907181	A	0.760676689352992	0	lncRNA	5-1_{1..508}	TC0Y000296.hg.1	TCONS_00017584-XLOC_008316 // Rinn lincRNAs // linc-AMELY-1 chrY:-:8551410-8551919 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:8551410-8551919	NA	Affy_HUMAN_HTA2.0	TCONS_00017584-XLOC_008316	linc-AMELY-1	chrY	  8551410	  8551919	-	NA	NA	NA	NA	WWC2	NA	chr4:184020463-184030352	Unknown
CUST_40547_PI429285431	12.299044	P	11.49061	P	1.7513094193439	0	lncRNA	41305-1_{1..2292}	n409673|NR_034073|lncRNA|Homosapiens||RefGeneNoncode|NR_034073||1.5577400|-0.2371474	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409673|NR_034073|lncRNA|Homosapiens||RefGeneNoncode|NR_034073||1.5577400|-0.2371474	chr1	109778155	109780446	+	NA	NA	NA	NA	SARS	NA	chr1:109768155-109780804	inner
CUST_40848_PI429285431	5.948426	P	6.324268	P	0.770655503811909	0	lncRNA	41551-1_{1..2725}	n410620|NR_037861_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037861_5||0.0806579|-0.2329433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410620|NR_037861_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037861_5||0.0806579|-0.2329433	chr6	  3464619	  3467343	+	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40chr6:3454619-3456793"	NA	inter
CUST_26973_PI429285431	2.224004	A	2.2072678	A	1.01166819833109	0	lncRNA	28499-1_{1..524}	n324060|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052798|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052798|-1.2352200|-0.2585626	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324060|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052798|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052798|-1.2352200|-0.2585626	chr9	 81679430	 81679953	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41507_PI429285431	7.442635	P	7.48293	P	0.972456080799779	0	lncRNA	42730-1_{1..109}	ENST00000584510 ncrna:miRNA chromosome:GRCh37:3:49843570:49843678:-1 gene:ENSG00000263506 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584510 ncrna:miRNA chromosome:GRCh37:3:49843570:49843678:-1 gene:ENSG00000263506 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 49843570	 49843678	-	ENSG00000263506	ENST00000584510	NA	NA	CDHR4	NA	chr3:49833570-49837254	inter
CUST_1412_PI429285431	0.9127297	A	0.9038028	A	1.00620683865254	0	lncRNA	1401-1_{1..828}	"transcript_id ""ENST00000597514.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597514.1"" | genecode_v17"	chr3	107007959	107008786	-	ENSG00000239828.2	ENST00000597514.1	RP11-446H18.5	RP11-446H18.5-005	CCDC54	NA	chr3:107046680-107051582	inter
CUST_3848_PI429285431	1.0640064	A	1.2989895	A	0.849694952566218	0	lncRNA	3817-1_{1..338}	"transcript_id ""ENST00000449749.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449749.1"" | genecode_v17"	chr11	  1798160	  1798497	-	ENSG00000230834.1	ENST00000449749.1	AC068580.7	AC068580.7-001	NA	NA	NA	inter
CUST_18901_PI429285431	2.279583	A	2.424591	A	0.904374362630867	0	lncRNA	20593-1_{1..2162}	lnc-HIATL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-HIATL1-3:1	chr9	 97121767	 97123928	+	lnc-HIATL1-3	lnc-HIATL1-3:1	ENSG00000232063	RP11-307E17.8	NA	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.51;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.26;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_3810_PI429285431	0.9160516	A	0.9186324	A	0.99821272483828	0	lncRNA	3778-1_{1..526}	"transcript_id ""ENST00000549104.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549104.1"" | genecode_v17"	chr10	119184705	119185230	+	ENSG00000258114.1	ENST00000549104.1	CTA-109P11.4	CTA-109P11.4-001	NA	NA	NA	inter
CUST_5552_PI429285431	3.9750366	P	4.589662	P	0.653099450718965	0	lncRNA	5482-1_{1..951}	"transcript_id ""ENST00000565229.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565229.2"" | genecode_v17"	chr16	 52656027	 52656977	+	ENSG00000261261.2	ENST00000565229.2	RP11-297L17.4	RP11-297L17.4-001	NA	NA	NA	inter
CUST_11088_PI429285431	0.9104196	A	0.9007498	A	1.00672510726344	0	lncRNA	12642-1_{1..424}	lnc-CHD2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD2-2:3	chr15	 93756162	 93756585	+	lnc-CHD2-2	lnc-CHD2-2:3	XLOC_011359	linc-MCTP2-6	NA	NA	NA	inter
CUST_31644_PI429285431	0.90050876	A	0.89641243	A	1.00284339438943	0	lncRNA	33395-1_{1..1459}	n338165|CR593703|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|554|NULL|-1.0650800|-0.3511374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338165|CR593703|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|554|NULL|-1.0650800|-0.3511374	chr15	 99927815	 99929273	+	NA	NA	NA	NA	LRRC28	NA	chr15:99917815-99926498	inter
CUST_14097_PI429285431	0.92123544	A	0.90608954	A	1.01055363878428	0	lncRNA	15743-1_{1..1396}	lnc-GJA1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GJA1-3:3	chr6	122282465	122283860	+	lnc-GJA1-3	lnc-GJA1-3:3	XLOC_005452	linc-HSF2-1	NA	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60"	NA	inter
CUST_41641_PI429285431	8.872747	P	8.785013	P	1.06269971874876	0	lncRNA	43038-1_{1..61}	ENST00000578197 ncrna:miRNA chromosome:GRCh37:19:50357848:50357908:1 gene:ENSG00000265954 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578197 ncrna:miRNA chromosome:GRCh37:19:50357848:50357908:1 gene:ENSG00000265954 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 50357848	 50357908	+	ENSG00000265954	ENST00000578197	NA	NA	PNKP	NA	chr19:50364460-50367908	inter
CUST_4152_PI429285431	1.0257064	A	0.9058749	A	1.08660794441371	0	lncRNA	4110-1_{1..657}	"transcript_id ""ENST00000602431.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602431.1"" | genecode_v17"	chr12	  6852151	  6852807	+	ENSG00000269892.1	ENST00000602431.1	RP4-761J14.10	RP4-761J14.10-001	MLF2	NA	chr12:6857158-6862636	inter
CUST_48261_PI429285431	2.4986541	A	2.6859763	A	0.878234308491267	0	lncRNA	52124-1_{1..1877}	hg19_lincRNAsTranscripts_TCONS_l2_00000052 range=chr1:2507865-2513404 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000052 range=chr1:2507865-2513404 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	  2507865	  2509741	+	NA	NA	NA	NA	MMEL1	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-49.92;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10chr1:2522081-2523404"	NA	inter
CUST_16339_PI429285431	0.9157502	A	1.3919652	A	0.718861128979085	0	lncRNA	18040-1_{1..574}	lnc-BDNF-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BDNF-1:4	chr11	 27655878	 27656451	-	lnc-BDNF-1	lnc-BDNF-1:4	XLOC_009399	linc-LIN7C	NA	NA	NA	inter
CUST_15889_PI429285431	0.8937208	A	0.901674	A	0.994502429100723	0	lncRNA	17580-1_{1..2254}	lnc-CBLB-7:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLB-7:17	chr3	106531617	106533870	-	lnc-CBLB-7	lnc-CBLB-7:17	XLOC_003202	linc-CBLB-4	NA	NA	NA	inter
LNCA_21_P0003527	1.5480087	A	0.9184685	A	1.5470718491259	0	lncRNA	ENST00000504785	NA	NA	NA	NA	XLOC_004127	NA	ENST00000504785	NA	NA	"BROAD Institute lincRNA (XLOC_004127), lincRNA [TCONS_00007883]"	chr4:153143704-153143645	hs|4q31.3	Agilent_HUMAN_G3V2	ENST00000504785	ENST00000504785	chr4	153143645	153143704	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_675_PI429285431	8.779905	P	8.947091	P	0.89057807509206	0	lncRNA	668-1_{1..579}	"transcript_id ""ENST00000425125.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425125.1"" | genecode_v17"	chr2	  6453086	  6453664	-	ENSG00000234275.1	ENST00000425125.1	AC017053.1	AC017053.1-001	NA	NA	NA	inter
CUST_29645_PI429285431	6.259529	P	6.1556063	P	1.07469158903974	0	lncRNA	31406-1_{1..389}	n333225|AF522368|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000081214|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000081214|2.1941700|-0.1101211	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333225|AF522368|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000081214|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000081214|2.1941700|-0.1101211	chr17	 38244609	 38244997	+	NA	NA	NA	NA	NR1D1	"hg19_refFlat_NR1D1:range=chr17:38249336-382563475'pad=0,hg19_refFlat_NR1D1:range=chr17:38249336-382563475'pad=0 3'pad=0 strand=- repeatMasking=none,-97.20chr17:38249037-38256973"	NA	inner
CUST_9812_PI429285431	1.4947482	A	1.2445972	A	1.18933159014611	0	lncRNA	11329-1_{1..334}	lnc-HEATR2-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HEATR2-3:7	chr7	   563717	   564050	+	lnc-HEATR2-3	lnc-HEATR2-3:7	XLOC_005958	linc-HEATR2-2	PDGFA	NA	chr7:553717-559481	inter
CUST_10847_PI429285431	7.259414	P	7.185416	P	1.05262969545382	0	lncRNA	12385-1_{1..663}	lnc-PDE6B-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE6B-1:9	chr4	   611511	   612173	+	lnc-PDE6B-1	lnc-PDE6B-1:9	XLOC_003411	linc-PDE6B	PDE6B	NA	chr4:619363-621867	inter
LNCA_21_P0002911	0.9187161	A	0.92412937	A	0.996254837841201	0	lncRNA	ENST00000460993	NA	NA	NA	NA	XLOC_003343	NA	ENST00000460993	NA	NA	"BROAD Institute lincRNA (XLOC_003343), lincRNA [TCONS_00005897]"	chr3:181138946-181138887	hs|3q26.33	Agilent_HUMAN_G3V2	ENST00000460993	ENST00000460993	chr3	181138887	181138946	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_898_PI429285431	8.042824	P	7.963091	P	1.05682243601931	0	lncRNA	887-1_{1..289}	"transcript_id ""ENST00000448204.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448204.1"" | genecode_v17"	chr2	 64557620	 64557908	-	ENSG00000238012.1	ENST00000448204.1	AC114752.1	AC114752.1-001	NA	NA	NA	inter
CUST_11576_PI429285431	0.902437	A	2.1859055	A	0.410806666851395	0	lncRNA	13155-1_{1..520}	lnc-CSMD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CSMD3-1:1	chr8	115323322	115323841	-	lnc-CSMD3-1	lnc-CSMD3-1:1	XLOC_007184	linc-CSMD3	NA	NA	NA	inter
CUST_22114_PI429285431	2.0793614	A	2.2990234	A	0.858766607929958	0	lncRNA	23719-1_{1..579}	lnc-BRP44L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-BRP44L-1:1	chr6	166878813	166879391	-	lnc-BRP44L-1	lnc-BRP44L-1:1	ENSG00000232082.1	RPS6KA2-IT1	RPS6KA2	NA	chr6:166868813-166888871	inner
CUST_25292_PI429285431	2.685911	A	3.4913306	P	0.572195636109542	0	lncRNA	26823-1_{1..889}	lnc-MED10-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MED10-6:1	chr5	  5140069	  5140957	-	lnc-MED10-6	lnc-MED10-6:1	ENSG00000250579.1	CTD-2297D10.2	ADAMTS16	NA	chr5:5140443-5150167	inter
CUST_16495_PI429285431	1.0299431	A	0.90940845	A	1.08713767147184	0	lncRNA	18192-2_{3001..5353}	lnc-DNAJC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAJC1-1:1	chr10	 22543633	 22545985	-	lnc-DNAJC1-1	lnc-DNAJC1-1:1	XLOC_008747	linc-DNAJC1	NA	"hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80"	NA	inter
CUST_2447_PI429285431	1.6580125	A	1.8256536	A	0.8902971854025	0	lncRNA	2439-1_{1..560}	"transcript_id ""ENST00000512115.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512115.2"" | genecode_v17"	chr5	176170206	176170765	+	ENSG00000248859.2	ENST00000512115.2	RP11-375B1.3	RP11-375B1.3-001	NA	NA	NA	inter
CUST_25779_PI429285431	1.5374005	A	0.92578906	A	1.52796493966278	0	lncRNA	27303-2_{3001..6000}	lnc-BHMT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BHMT2-1:1	chr5	 77774327	 77777326	+	lnc-BHMT2-1	lnc-BHMT2-1:1	ENSG00000085365.12	SCAMP1	LHFPL2	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10chr5:77781038-77786562"	NA	inner
LNCA_21_P0006117	2.6914182	A	2.9788945	A	0.819334063115056	0	lncRNA	TCONS_00015901	NA	NA	NA	NA	XLOC_007262	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007262), lincRNA [TCONS_00015901]"	chr9:1048626-1048685	hs|9p24.3	Agilent_HUMAN_G3V2	TCONS_00015901	TCONS_00015901	chr9	  1048626	  1048685	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25844_PI429285431	2.5531995	A	1.9466746	A	1.52258724749339	0	lncRNA	27365-1_{1..3000}	lnc-HOXB7-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOXB7-1:4	chr17	 46716448	 46719447	-	lnc-HOXB7-1	lnc-HOXB7-1:4	ENSG00000260027.1	RP11-357H14.19	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-57.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00"	NA	inter
CUST_28272_PI429285431	1.6693215	A	1.5790808	A	1.06454777734944	0	lncRNA	29907-1_{1..2201}	n325566|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000131473|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000131473|-0.6836730|-0.2336483	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325566|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000131473|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000131473|-0.6836730|-0.2336483	chr17	 16820037	 16822237	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50"	NA	inter
CUST_49291_PI429285431	1.7567548	A	1.2568154	A	1.4141541599772	0	lncRNA	53108-3_{6001..8636}	hg19_lincRNAsTranscripts_TCONS_l2_00022139 range=chr5:1614371-1625423 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022139 range=chr5:1614371-1625423 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	  1620371	  1623006	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35710_PI429285431	6.263285	P	5.695061	P	1.48269720286633	0	lncRNA	37130-1_{1..1244}	n342877|AJ420454|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5382|NULL|-1.1439700|-0.2930428	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342877|AJ420454|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5382|NULL|-1.1439700|-0.2930428	chr9	116817670	116818913	+	NA	NA	NA	NA	ZNF618	NA	chr9:116807670-116818875	inner
LNCA_21_P0001472	0.9224686	A	0.919313	A	1.00218968911827	0	lncRNA	TCONS_00001408	NA	NA	NA	NA	XLOC_000723	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000723), lincRNA [TCONS_00001408]"	chr1:18332034-18331975	hs|1p36.13	Agilent_HUMAN_G3V2	TCONS_00001408	TCONS_00001408	chr1	 18331975	 18332034	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012954	1.4411693	A	1.4822904	A	0.971899403201284	0	lncRNA	ENST00000512965	NA	NA	NA	NA	XLOC_l2_011744	NA	ENST00000512965	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011744), lincRNA [TCONS_l2_00023529]"	chr5:124485560-124485619	hs|5q23.2	Agilent_HUMAN_G3V2	ENST00000512965	ENST00000512965	chr5	124485560	124485619	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4492_PI429285431	0.91092336	A	0.91322654	A	0.998404830913509	0	lncRNA	4441-1_{1..421}	"transcript_id ""ENST00000536517.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536517.1"" | genecode_v17"	chr12	127236887	127237307	-	ENSG00000256128.1	ENST00000536517.1	RP11-173C20.2	RP11-173C20.2-003	NA	NA	NA	inter
CUST_26577_PI429285431	4.9273453	P	5.013352	P	0.942126898576205	0	lncRNA	28081-1_{1..669}	lnc-CDR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDR2-1:1	chr16	 22299757	 22300425	-	lnc-CDR2-1	lnc-CDR2-1:1	ENSG00000261113.1	RP11-141O15.1	EEF2K	NA	chr16:22289757-22300066	inner
CUST_20294_PI429285431	4.048986	P	4.4518986	P	0.756329816518822	0	lncRNA	21938-1_{1..622}	lnc-PHF14-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHF14-1:4	chr7	 11361876	 11362497	+	lnc-PHF14-1	lnc-PHF14-1:4	ENSG00000230333.1	AC004538.3	NA	NA	NA	inter
CUST_33798_PI429285431	4.417301	P	3.8298812	P	1.50255708218295	0	lncRNA	35350-1_{1..2237}	n340586|AK096154|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3048|NULL|-1.1924500|-0.4312644	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340586|AK096154|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3048|NULL|-1.1924500|-0.4312644	chr5	114539712	114541948	-	NA	NA	NA	NA	PGGT1B	NA	chr5:114546527-114551943	inter
CUST_21927_PI429285431	0.899069	A	1.4537424	A	0.680811164109576	0	lncRNA	23535-1_{1..465}	lnc-MYLK4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYLK4-1:1	chr6	  2765581	  2766045	-	lnc-MYLK4-1	lnc-MYLK4-1:1	ENSG00000251499.1	RP11-420G6.3	WRNIP1	NA	chr6:2765666-2775826	inner
CUST_23450_PI429285431	1.9243402	A	2.1885014	A	0.832682725607035	0	lncRNA	25017-1_{1..587}	lnc-ZAP70-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZAP70-2:1	chr2	 98292094	 98292680	+	lnc-ZAP70-2	lnc-ZAP70-2:1	ENSG00000228486.2	AC017099.3	NA	NA	NA	inter
CUST_769_PI429285431	1.0372727	A	1.2656685	A	0.853583503633357	0	lncRNA	761-1_{1..264}	"transcript_id ""ENST00000418481.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418481.1"" | genecode_v17"	chr2	 14756552	 14756815	+	ENSG00000228505.1	ENST00000418481.1	AC011897.2	AC011897.2-002	FAM84A	NA	chr2:14772810-14780170	inter
CUST_49089_PI429285431	3.9464395	P	2.6160285	A	2.51474305578806	0	lncRNA	52913-1_{1..741}	hg19_lincRNAsTranscripts_TCONS_l2_00020403 range=chr4:9495404-9515589 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020403 range=chr4:9495404-9515589 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	  9495404	  9496144	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18166_PI429285431	1.4382485	A	0.97293895	A	1.38061355118411	0	lncRNA	19901-1_{1..572}	lnc-TMEM75-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM75-2:1	chr8	129576475	129577046	-	lnc-TMEM75-2	lnc-TMEM75-2:1	ENSG00000253466	RP11-89M16.1	NA	NA	NA	inter
LNCA_21_P0003045	0.9161735	A	1.2380273	A	0.800041198894171	0	lncRNA	TCONS_00007008	NA	NA	NA	NA	XLOC_002878	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002878), lincRNA [TCONS_00007008]"	chr3:152395977-152396036	hs|3q25.2	Agilent_HUMAN_G3V2	TCONS_00007008	TCONS_00007008	chr3	152395977	152396036	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12685_PI429285431	7.2514324	P	6.984475	P	1.20326749530823	0	lncRNA	14303-1_{1..243}	lnc-C5orf38-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf38-1:3	chr5	  2918788	  2919030	+	lnc-C5orf38-1	lnc-C5orf38-1:3	XLOC_004256	linc-IRX1-8	NA	NA	NA	inter
CUST_82_PI429201921	1.0858352	A	0.8922516	A	1.14360085206995	0	lncRNA	84-1_{1..2464}	TC02004284.hg.1	TCONS_l2_00015820-XLOC_l2_008047 // Broad TUCP // linc-PELI1-3 chr2:-:64557619-64559265 // chr2 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00014613-XLOC_l2_008047 // Broad TUCP // linc-PELI1-3 chr2:-:64557655-64560084 // chr2 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr2:-:64557619-64559265	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00015820-XLOC_l2_008047	linc-PELI1-3	chr2	 64557619	 64559265	-	NA	NA	NA	NA	SLC6A16	NA	chr19:49824916-49828474	Unknown
CUST_1407_PI429285431	2.940845	A	3.5152001	P	0.671586390549074	0	lncRNA	1396-1_{1..506}	"transcript_id ""ENST00000498624.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000498624.1"" | genecode_v17"	chr3	101679230	101679735	+	ENSG00000241280.1	ENST00000498624.1	RP11-221J22.2	RP11-221J22.2-002	NA	NA	NA	inter
CUST_25050_PI429285431	1.7479304	A	1.6208079	A	1.09211327372528	0	lncRNA	26589-1_{1..243}	lnc-SLC1A1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC1A1-3:1	chr9	  3878602	  3878844	+	lnc-SLC1A1-3	lnc-SLC1A1-3:1	ENSG00000236724.1	RP11-252M18.3	GLIS3	NA	chr9:3868602-3888809	inner
LNCA_21_P0014371	1.3238027	A	1.3870192	A	0.957127814725936	0	lncRNA	XR_109493	XR_109493	XR_109493	NA	NA	LOC100506114	uncharacterized LOC100506114	NA	THC2546627	NA	"PREDICTED: Homo sapiens hypothetical LOC100506114 (LOC100506114), miscRNA [XR_109493]"	chr19:50990154-50990095	hs|19q13.33	Agilent_HUMAN_G3V2	XR_109493	XR_109493	chr19	 50990095	 50990154	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14763_PI429285431	0.89474934	A	0.8957891	A	0.999279552934244	0	lncRNA	16424-1_{1..394}	lnc-DROSHA-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DROSHA-7:2	chr5	 29395961	 29396354	-	lnc-DROSHA-7	lnc-DROSHA-7:2	XLOC_004765	linc-CDH9-6	NA	NA	NA	inter
CUST_31406_PI429285431	8.549254	P	8.134704	P	1.33288286444544	0	lncRNA	33180-1_{1..3000}	n337872|AK125603|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|255|NULL|0.0369465|-0.2949808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337872|AK125603|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|255|NULL|0.0369465|-0.2949808	chr1	 38275248	 38278247	-	NA	NA	NA	NA	YRDC	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70chr1:38268614-38273865"	NA	inner
CUST_17466_PI429285431	1.0229732	A	0.89933926	A	1.08947564071923	0	lncRNA	19192-1_{1..386}	lnc-HS1BP3-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HS1BP3-1:10	chr2	 20728437	 20728822	-	lnc-HS1BP3-1	lnc-HS1BP3-1:10	XLOC_002010	linc-PUM2-2	HS1BP3	NA	chr2:20729156-20738507	inter
CUST_9170_PI429285431	2.8386917	A	3.7782083	P	0.521407557801725	0	lncRNA	10687-1_{1..1512}	lnc-TBPL2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TBPL2-1:3	chr14	 56046654	 56048165	-	lnc-TBPL2-1	lnc-TBPL2-1:3	ENSG00000186615	ENST00000335142	KTN1	NA	chr14:56046925-56056810	inter
CUST_37750_PI429285431	12.153959	P	10.923079	P	2.34710112206021	0	lncRNA	38845-1_{1..324}	n346255|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1805|NULL|-1.3367700|-0.1773816	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346255|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1805|NULL|-1.3367700|-0.1773816	chr1	 96912360	 96912683	-	NA	NA	NA	NA	NA	"hg19_refFlat_EEF1A1:range=chr6:74227533-742297495'pad=0,hg19_refFlat_EEF1A1:range=chr6:74227533-742297495'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70"	NA	inter
CUST_10900_PI429285431	6.6603613	P	6.519651	P	1.10244776410602	0	lncRNA	12442-1_{1..211}	lnc-GPR123-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR123-1:1	chr10	134831122	134831332	+	lnc-GPR123-1	lnc-GPR123-1:1	XLOC_008679	linc-GPR123-1	NA	NA	NA	inter
CUST_9427_PI429285431	0.90729904	A	1.3270438	A	0.747556869547641	0	lncRNA	10933-1_{1..662}	lnc-CCDC37-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCDC37-2:2	chr3	126009796	126010457	+	lnc-CCDC37-2	lnc-CCDC37-2:2	XLOC_002797	linc-CCDC37-3	LOC644662	NA	chr3:125999796-126010368	inter
CUST_6878_PI429285431	0.88886714	A	0.8902281	A	0.999057099223712	0	lncRNA	6829-1_{1..292}	"transcript_id ""ENST00000586552.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586552.1"" | genecode_v17"	chr21	 43133016	 43133307	-	ENSG00000236384.3	ENST00000586552.1	LINC00479	LINC00479-003	NA	NA	NA	inter
CUST_20440_PI429285431	0.92091054	A	1.1643637	A	0.844721010312307	0	lncRNA	22084-1_{1..503}	lnc-ELAVL4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ELAVL4-4:1	chr1	 50936733	 50937235	+	lnc-ELAVL4-4	lnc-ELAVL4-4:1	ENSG00000225767.1	RP5-850O15.3	FAF1	NA	chr1:50926733-50946822	inner
CUST_7801_PI429285431	0.89626527	A	0.89227515	A	1.0027695686166	0	lncRNA	9425-1_{1..1663}	lnc-AC124890.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC124890.1-1:1	chr12	 69186186	 69187848	+	lnc-AC124890.1-1	lnc-AC124890.1-1:1	ENSG00000251695	ENST00000504589	NA	"hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-60.90;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10"	NA	inter
CUST_50539_PI429285431	9.556929	P	9.498852	P	1.04107716091814	0	lncRNA	54232-2_{3001..3189}	hg19_lincRNAsTranscripts_TCONS_l2_00030632 range=chrX:152583139-152587121 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030632 range=chrX:152583139-152587121 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	152586139	152586327	-	NA	NA	NA	NA	LOC649201	NA	chrX:152584396-152587591	inter
CUST_9644_PI429285431	2.8735836	P	2.4066455	A	1.38217290200776	0	lncRNA	11162-1_{1..345}	lnc-C16orf72-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C16orf72-5:1	chr16	  9773064	  9773408	+	lnc-C16orf72-5	lnc-C16orf72-5:1	XLOC_011640	linc-ATF7IP2-1	NA	NA	NA	inter
CUST_4617_PI429285431	0.913543	A	0.91518813	A	0.998860332693468	0	lncRNA	4563-1_{1..310}	"transcript_id ""ENST00000420693.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420693.1"" | genecode_v17"	chr13	 45924458	 45924767	+	ENSG00000228886.1	ENST00000420693.1	RP11-290D2.3	RP11-290D2.3-001	TPT1	NA	chr13:45914458-45915297	inter
CUST_32791_PI429285431	4.885293	P	4.4702497	P	1.3333386943488	0	lncRNA	34426-1_{1..1746}	n339434|AL049423|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1866|NULL|-1.1859700|-0.2572742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339434|AL049423|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1866|NULL|-1.1859700|-0.2572742	chr3	114033347	114035092	-	NA	NA	NA	NA	TIGIT	NA	chr3:114023347-114029135	inter
CUST_16892_PI429285431	4.251519	P	4.9652157	P	0.609755723448999	0	lncRNA	18600-2_{3001..4737}	lnc-TMEM105-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-TMEM105-3:1	chr17	 79366690	 79368426	-	lnc-TMEM105-3	lnc-TMEM105-3:1	XLOC_012587	linc-TMEM105-2	BAHCC1	NA	chr17:79373540-79377287	inter
CUST_36987_PI429285431	0.907389	A	0.913604	A	0.99570135600584	0	lncRNA	38132-1_{1..1541}	n345448|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_997|NULL|-1.3033600|-0.2929093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345448|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_997|NULL|-1.3033600|-0.2929093	chr1	 89386429	 89387969	-	NA	NA	NA	NA	CCBL2	NA	chr1:89389071-89398534	inter
LNCA_21_P0004332	0.90637964	A	0.89647704	A	1.00688757022928	0	lncRNA	TCONS_00010168	NA	NA	NA	NA	XLOC_004631	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004631), lincRNA [TCONS_00010168]"	chr5:171919671-171934563	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00010168	TCONS_00010168	chr5	171919671	171934563	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14426_PI429285431	3.0744283	P	3.1910987	P	0.922313806865782	0	lncRNA	16087-1_{1..892}	lnc-TCF12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF12-2:1	chr15	 57617048	 57617939	+	lnc-TCF12-2	lnc-TCF12-2:1	XLOC_011265	linc-CGNL1-1	NA	NA	NA	inter
CUST_45640_PI429285431	2.7648978	A	2.6463838	A	1.08561608373731	0	lncRNA	50020-1_{1..3000}	"gi|226061010|ref|NR_027429.1| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|226061010|ref|NR_027429.1| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 2, non-coding RNA"	Chr10	 81805989	 81808988	-	219347	NR_027429.1	NA	NA	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
LNCA_21_P0008697	1.1867573	A	1.3348277	A	0.902456688702168	0	lncRNA	TCONS_00023559	NA	NA	NA	NA	XLOC_011384	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011384), lincRNA [TCONS_00023559]"	chr15:100890890-100890949	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_00023559	TCONS_00023559	chr15	100890890	100890949	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49597_PI429285431	0.89869404	A	0.89234775	A	1.00440860244083	0	lncRNA	53387-1_{1..2968}	hg19_lincRNAsTranscripts_TCONS_l2_00024507 range=chr6:160131442-160134505 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024507 range=chr6:160131442-160134505 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	160131442	160134409	+	NA	NA	NA	NA	NA	"hg19_refFlat_HNRNPH2:range=chrX:100666977-1006683265'pad=0,hg19_refFlat_HNRNPH2:range=chrX:100666977-1006683265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_HNRNPH1:range=chr5:179042547-1790501345'pad=0,hg19_refFlat_HNRNPH1:range=chr5:179042547-1790501345'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50"	NA	inter
CUST_1302_PI429285431	0.89424	A	1.4118415	A	0.6985321875563	0	lncRNA	1292-1_{1..598}	"transcript_id ""ENST00000454232.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454232.1"" | genecode_v17"	chr3	 10049146	 10049743	-	ENSG00000206567.5	ENST00000454232.1	AC022007.5	AC022007.5-004	LOC401052	NA	chr3:10048102-10052779	inner
CUST_24390_PI429285431	3.9747257	P	4.4155636	P	0.736706613992927	0	lncRNA	25943-1_{1..421}	lnc-UNC5CL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-UNC5CL-2:1	chr6	 40491571	 40491991	-	lnc-UNC5CL-2	lnc-UNC5CL-2:1	ENSG00000226454.1	RP3-462C17.1	LRFN2	NA	chr6:40481571-40501672	inner
CUST_16016_PI429285431	0.9140111	A	1.9392473	A	0.491329851493811	0	lncRNA	17711-1_{1..2141}	lnc-RP11-67H2.1.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RP11-67H2.1.1-2:2	chr8	112768739	112770879	+	lnc-RP11-67H2.1.1-2	lnc-RP11-67H2.1.1-2:2	XLOC_006903	linc-UTP23-3	NA	NA	NA	inter
CUST_4062_PI429285431	0.90869987	A	1.041618	A	0.911984917334661	0	lncRNA	4024-1_{1..435}	"transcript_id ""ENST00000532109.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532109.1"" | genecode_v17"	chr11	 98547121	 98547555	+	ENSG00000254599.1	ENST00000532109.1	RP11-115E19.1	RP11-115E19.1-001	NA	NA	NA	inter
CUST_33758_PI429285431	1.7761126	A	2.626095	A	0.554791504110776	0	lncRNA	35313-1_{1..3000}	n340538|AK055873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3000|NULL|-0.7746360|-0.1473986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340538|AK055873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3000|NULL|-0.7746360|-0.1473986	chr17	 18010647	 18013646	-	NA	NA	NA	NA	MYO15A	NA	chr17:18012020-18023777	inner
LNCA_21_P0007951	0.90857863	A	0.8982827	A	1.00716212103098	0	lncRNA	ENST00000458480	NA	NA	NA	NA	XLOC_010456	NA	ENST00000458480	NA	NA	"BROAD Institute lincRNA (XLOC_010456), lincRNA [TCONS_00021578]"	chr13:81876480-81876539	hs|13q31.1	Agilent_HUMAN_G3V2	ENST00000458480	ENST00000458480	chr13	 81876480	 81876539	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8445_PI429285431	0.90673697	A	1.2688092	A	0.778046221901905	0	lncRNA	10014-2_{3001..4196}	lnc-TESC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TESC-1:1	chr12	117426459	117427654	-	lnc-TESC-1	lnc-TESC-1:1	ENSG00000250998	ENSG00000257279.1	FBXW8	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_FBXW8:range=chr12:117348843-1174659775'pad=0,hg19_refFlat_FBXW8:range=chr12:117348843-1174659775'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.90chr12:117413459-117435142"	NA	inner
CUST_4484_PI429285431	0.898438	A	1.4195457	A	0.696836597190231	0	lncRNA	4433-1_{1..856}	"transcript_id ""ENST00000539315.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539315.1"" | genecode_v17"	chr12	127211146	127212001	+	ENSG00000189238.4	ENST00000539315.1	RP11-173C20.1	RP11-173C20.1-006	NA	NA	NA	inter
CUST_41635_PI429285431	1.0995977	A	0.90045154	A	1.14801871418954	0	lncRNA	43028-1_{1..84}	ENST00000581823 ncrna:miRNA chromosome:GRCh37:2:60614497:60614580:-1 gene:ENSG00000266078 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581823 ncrna:miRNA chromosome:GRCh37:2:60614497:60614580:-1 gene:ENSG00000266078 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 60614497	 60614580	-	ENSG00000266078	ENST00000581823	NA	NA	NA	NA	NA	inter
CUST_5055_PI429285431	5.3783584	P	5.8598094	P	0.716256881566391	0	lncRNA	4995-1_{1..486}	"transcript_id ""ENST00000558224.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558224.1"" | genecode_v17"	chr14	103587184	103587669	-	ENSG00000259717.1	ENST00000558224.1	LINC00677	LINC00677-002	TNFAIP2	NA	chr14:103592664-103599246	inter
CUST_48722_PI429285431	0.8956399	A	0.8959633	A	0.999775861324634	0	lncRNA	52564-1_{1..764}	hg19_lincRNAsTranscripts_TCONS_l2_00015960 range=chr2:130769638-130792272 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015960 range=chr2:130769638-130792272 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	130769638	130770401	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4095_PI429285431	0.8979998	A	0.8934273	A	1.0031744433908	0	lncRNA	4056-1_{1..376}	"transcript_id ""ENST00000604533.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604533.1"" | genecode_v17"	chr11	117539198	117539573	+	ENSG00000270403.1	ENST00000604533.1	RP11-35P15.1	RP11-35P15.1-001	DSCAML1	NA	chr11:117529198-117549573	inner
CUST_21636_PI429285431	3.3502789	P	3.3739614	P	0.983718541306285	0	lncRNA	23248-1_{1..452}	lnc-ADA-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADA-1:2	chr20	 43374606	 43375057	-	lnc-ADA-1	lnc-ADA-1:2	ENSG00000244558.1	RP11-445H22.4	RIMS4	NA	chr20:43380445-43384636	inner
CUST_88_PI429201921	2.6197388	A	2.3824508	A	1.17877469886115	0	lncRNA	91-1_{1..2558}	TC15002103.hg.1	TCONS_l2_00008467-XLOC_l2_004593 // Broad TUCP // linc-APBA2-5 chr15:+:28579829-28582388 // chr15 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr15:+:28579829-28582388	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00008467-XLOC_l2_004593	linc-APBA2-5	chr15	 28579829	 28582388	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39505_PI429285431	2.4446938	A	2.838336	A	0.761205452099856	0	lncRNA	40451-1_{1..1473}	n387265|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ara.1||-0.8820980|-0.2280146	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387265|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ara.1||-0.8820980|-0.2280146	chr22	 46726771	 46728243	+	NA	NA	NA	NA	TRMU	NA	chr22:46731298-46739593	inter
CUST_37107_PI429285431	0.9106645	A	1.0798333	A	0.889354930038181	0	lncRNA	38232-1_{1..1044}	n345550|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1099|NULL|-1.3590800|-0.3962249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345550|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1099|NULL|-1.3590800|-0.3962249	chr2	168351650	168352693	+	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40"	NA	inter
CUST_16290_PI429285431	2.7548113	A	2.8311157	A	0.948484169555895	0	lncRNA	17997-1_{1..3000}	lnc-ANKRA2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRA2-5:1	chr5	 72410414	 72413413	-	lnc-ANKRA2-5	lnc-ANKRA2-5:1	XLOC_004879	linc-ZNF366-6	TMEM171	NA	chr5:72416388-72423568	inter
CUST_49865_PI429285431	4.2155175	P	5.1177444	P	0.535060190952979	0	lncRNA	53617-1_{1..300}	hg19_lincRNAsTranscripts_TCONS_l2_00027139 range=chr7:75803627-75806523 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027139 range=chr7:75803627-75806523 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 75803627	 75803926	+	NA	NA	NA	NA	SRRM3	NA	chr7:75804786-75816523	inter
CUST_46489_PI429285431	1.2930063	A	1.1985714	A	1.06764713145216	0	lncRNA	50683-2_{3001..5966}	"gi|338827611|ref|NR_040051.1| Homo sapiens IQCH antisense RNA 1 (IQCH-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|338827611|ref|NR_040051.1| Homo sapiens IQCH antisense RNA 1 (IQCH-AS1), transcript variant 1, non-coding RNA"	Chr15	 67698949	 67701914	-	100506686	NR_040051.1	NA	NA	NA	"hg19_refFlat_IQCH:range=chr15:67547235-677930845'pad=0,hg19_refFlat_IQCH:range=chr15:67547235-677930845'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_C15orf61:range=chr15:67813587-678188835'pad=0,hg19_refFlat_C15orf61:range=chr15:67813587-678188835'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40"	NA	inter
CUST_51559_PI429285431	0.90385157	A	0.90723825	A	0.997655285454098	0	lncRNA	55124-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00011627 range=chr17:18417386-18424566 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011627 range=chr17:18417386-18424566 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 18417386	 18420385	-	NA	NA	NA	NA	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.82;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50"	NA	inter
CUST_50338_PI429285431	6.125718	P	6.014389	P	1.08022287162773	0	lncRNA	54054-1_{1..1207}	hg19_lincRNAsTranscripts_TCONS_l2_00029087 range=chr9:133223935-133231220 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029087 range=chr9:133223935-133231220 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	133223935	133225141	+	NA	NA	NA	NA	HMCN2	NA	chr9:133223389-133241220	inter
CUST_6367_PI429285431	3.4707491	P	3.915036	P	0.73494749911597	0	lncRNA	6293-1_{1..1059}	"transcript_id ""ENST00000600369.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600369.1"" | genecode_v17"	chr19	 17516572	 17517630	+	ENSG00000269640.1	ENST00000600369.1	CTD-2521M24.9	CTD-2521M24.9-005	FAM125A	"hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-25.50;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-22.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-23.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_CEP63:range=chr3:134214163-1342937335'pad=0,hg19_refFlat_CEP63:range=chr3:134214163-1342937335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10chr19:17527840-17535813"	NA	inter
CUST_10676_PI429285431	7.367504	P	7.544565	P	0.884503036002965	0	lncRNA	12209-1_{1..580}	lnc-AC004980.12.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC004980.12.1-2:1	chr7	 76318445	 76319024	+	lnc-AC004980.12.1-2	lnc-AC004980.12.1-2:1	XLOC_006151	linc-CCDC146-2	NA	NA	NA	inter
CUST_45212_PI429285431	0.9148472	A	0.9091886	A	1.00392994469605	0	lncRNA	49675-1_{1..3000}	"gi|339895840|ref|NR_040434.1| Homo sapiens uncharacterized LOC100505676 (LOC100505676), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|339895840|ref|NR_040434.1| Homo sapiens uncharacterized LOC100505676 (LOC100505676), non-coding RNA"	Chr8	 67331822	 67334821	-	100505676	NR_040434.1	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
LNCA_21_P0004372	0.9217768	A	0.9104897	A	1.00785430603781	0	lncRNA	THC2745796	NA	NA	NA	NA	XLOC_004765	NA	NA	THC2745796	NA	"BROAD Institute lincRNA (XLOC_004765), lincRNA [TCONS_00010291]"	NA	NA	Agilent_HUMAN_G3V2	THC2745796	THC2745796	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006286	0.92220706	A	0.9108742	A	1.00788627408591	0	lncRNA	TCONS_00016379	NA	NA	NA	NA	XLOC_007754	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007754), lincRNA [TCONS_00016379]"	chr9:87650686-87650627	hs|9q21.33	Agilent_HUMAN_G3V2	TCONS_00016379	TCONS_00016379	chr9	 87650627	 87650686	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20089_PI429285431	0.90839577	A	1.679909	A	0.585802709008668	0	lncRNA	21737-1_{1..794}	lnc-TP53INP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TP53INP1-2:1	chr8	 96099874	 96100667	-	lnc-TP53INP1-2	lnc-TP53INP1-2:1	ENSG00000254248.1	RP11-320N21.2	NA	NA	NA	inter
CUST_19646_PI429285431	2.3294458	A	2.8192961	A	0.712098984298751	0	lncRNA	21302-1_{1..194}	lnc-C3orf32-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C3orf32-5:1	chr3	  7601970	  7602163	-	lnc-C3orf32-5	lnc-C3orf32-5:1	ENSG00000236202.1	GRM7-AS1	GRM7	NA	chr3:7591970-7612020	inner
CUST_46784_PI429285431	4.122954	P	4.766935	P	0.639944634807224	0	lncRNA	50931-1_{1..1797}	"gi|397139636|ref|XR_158912.1| PREDICTED: Homo sapiens uncharacterized LOC339260 (LOC339260), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139636|ref|XR_158912.1| PREDICTED: Homo sapiens uncharacterized LOC339260 (LOC339260), misc_RNA"	NA	NA	NA	NA	NA	XR_158912.1	NA	NA	NA	NA	NA	Unknown
CUST_23755_PI429285431	3.29602	P	3.4472423	P	0.900487216127487	0	lncRNA	25318-1_{1..758}	lnc-SCAPER-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SCAPER-1:1	chr15	 76634233	 76634990	-	lnc-SCAPER-1	lnc-SCAPER-1:1	ENSG00000259514.1	RP11-685G9.2	SCAPER	"hg19_refFlat_ISL1:range=chr5:50679506-506894445'pad=0,hg19_refFlat_ISL1:range=chr5:50679506-506894445'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ISL2:range=chr15:76629225-766341765'pad=0,hg19_refFlat_ISL2:range=chr15:76629225-766341765'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.10chr15:76640526-76644404"	NA	inner
CUST_15840_PI429285431	10.281548	P	10.587562	P	0.808873498966261	0	lncRNA	17531-1_{1..386}	lnc-PPP1R3F-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP1R3F-1:1	chrX	 49157830	 49158215	+	lnc-PPP1R3F-1	lnc-PPP1R3F-1:1	XLOC_007981	linc-GAGE10	GAGE10	NA	chrX:49160125-49167930	inter
CUST_46310_PI429285431	5.058036	P	5.1001635	P	0.971221658805526	0	lncRNA	50541-1_{1..1895}	"gi|298493261|ref|NR_033761.1| Homo sapiens ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B) (ATP5S), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298493261|ref|NR_033761.1| Homo sapiens ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B) (ATP5S), transcript variant 4, non-coding RNA"	Chr14	 50779047	 50780941	+	27109	NR_033761.1	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20"	NA	inter
CUST_21236_PI429285431	3.1621325	A	3.807174	P	0.639474395504359	0	lncRNA	22862-1_{1..554}	lnc-STRA6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STRA6-1:1	chr15	 74471497	 74472050	-	lnc-STRA6-1	lnc-STRA6-1:1	ENSG00000261543.1	RP11-665J16.1	STRA6	NA	chr15:74471807-74481567	inter
CUST_47420_PI429285431	11.251102	P	11.3252535	P	0.949900626864588	0	lncRNA	51459-2_{3001..3084}	"gi|165905586|ref|NR_004858.1| Homo sapiens protein O-fucosyltransferase 2 (POFUT2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|165905586|ref|NR_004858.1| Homo sapiens protein O-fucosyltransferase 2 (POFUT2), transcript variant 2, non-coding RNA"	Chr21	 46686843	 46686926	-	23275	NR_004858.1	NA	NA	NA	NA	NA	inter
CUST_41240_PI429285431	1.7796402	A	1.392073	A	1.30818556463233	0	lncRNA	42163-1_{1..84}	ENST00000385048 ncrna:miRNA chromosome:GRCh37:19:50004042:50004125:-1 gene:ENSG00000207782 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385048 ncrna:miRNA chromosome:GRCh37:19:50004042:50004125:-1 gene:ENSG00000207782 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 50004042	 50004125	-	ENSG00000207782	ENST00000385048	NA	NA	RPL13A	NA	chr19:49994042-49995565	inter
CUST_14218_PI429285431	0.9099647	A	0.9086404	A	1.00091835624231	0	lncRNA	15874-1_{1..674}	lnc-VAV3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VAV3-1:1	chr1	106615580	106616253	-	lnc-VAV3-1	lnc-VAV3-1:1	XLOC_000950	linc-AMY1A-4	NA	NA	NA	inter
CUST_12700_PI429285431	2.6562047	A	2.2090054	A	1.36339093886939	0	lncRNA	14317-1_{1..271}	lnc-OBSL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OBSL1-1:1	chr2	220491215	220491485	-	lnc-OBSL1-1	lnc-OBSL1-1:1	XLOC_002496	linc-OBSL1-2	SLC4A3	NA	chr2:220492292-220501415	inter
CUST_44310_PI429285431	1.2386162	A	1.851316	A	0.653971740371517	0	lncRNA	48942-1_{1..1064}	"gi|410170471|ref|XR_171035.1| PREDICTED: Homo sapiens uncharacterized LOC101060141, transcript variant 1 (LOC101060141), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170471|ref|XR_171035.1| PREDICTED: Homo sapiens uncharacterized LOC101060141, transcript variant 1 (LOC101060141), misc_RNA"	NA	NA	NA	NA	NA	XR_171035.1	NA	NA	NA	NA	NA	Unknown
CUST_26955_PI429285431	2.0284932	A	1.9341553	A	1.0675753503152	0	lncRNA	28476-1_{1..474}	n324036|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053037|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053037|-1.0898700|-0.2053958	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324036|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053037|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053037|-1.0898700|-0.2053958	chr9	 93228340	 93228813	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44208_PI429285431	0.9137478	A	0.90667593	A	1.004913880457	0	lncRNA	48862-1_{1..2524}	"gi|223029491|ref|NR_026767.1| Homo sapiens long intergenic non-protein coding RNA 488 (LINC00488), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223029491|ref|NR_026767.1| Homo sapiens long intergenic non-protein coding RNA 488 (LINC00488), non-coding RNA"	Chr3	108897012	108899535	+	677779	NR_026767.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_36720_PI429285431	0.9079964	A	0.9060251	A	1.00136733498827	0	lncRNA	37898-1_{1..1527}	n345205|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_754|NULL|-1.3505500|-0.4001015	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345205|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_754|NULL|-1.3505500|-0.4001015	chr13	 80654159	 80655685	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13305_PI429285431	1.0420408	A	1.372172	A	0.795464140232619	0	lncRNA	14939-1_{1..483}	lnc-CPSF7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPSF7-2:1	chr11	 61239773	 61240255	-	lnc-CPSF7-2	lnc-CPSF7-2:1	XLOC_009449	linc-CPSF7-1	C11orf66	NA	chr11:61248585-61249949	inter
LNCA_21_P0006479	5.5277886	P	5.8134947	P	0.820340010525539	0	lncRNA	TCONS_00017130	NA	NA	NA	NA	XLOC_007920	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007920), lincRNA [TCONS_00017130]"	chrX:3114462-3117734	hs|Xp22.33	Agilent_HUMAN_G3V2	TCONS_00017130	TCONS_00017130	chrX	  3114462	  3117734	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002248	0.905702	A	0.9170681	A	0.992152572927987	0	lncRNA	TCONS_00003750	NA	NA	NA	NA	XLOC_001548	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001548), lincRNA [TCONS_00003750]"	chr2:84114427-84114486	hs|2p11.2	Agilent_HUMAN_G3V2	TCONS_00003750	TCONS_00003750	chr2	 84114427	 84114486	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32606_PI429285431	0.916191	A	0.91565573	A	1.0003710897281	0	lncRNA	34266-1_{1..771}	n339227|BC039672|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1659|NULL|1.0274200|-0.2703737	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339227|BC039672|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1659|NULL|1.0274200|-0.2703737	chr3	 75273647	 75274417	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13_PI429201921	0.89213026	A	1.0612624	A	0.889377529523906	0	lncRNA	14-1_{1..826}	TC06003768.hg.1	TCONS_l2_00025436-XLOC_l2_013064 // Broad TUCP // linc-MAP3K7-4 chr6:-:93432720-93433547 // chr6 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6:-:93432720-93433547	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00025436-XLOC_l2_013064	linc-MAP3K7-4	chr6	 93432720	 93433547	-	NA	NA	NA	NA	MYO1G	NA	chr7:45012684-45018704	Unknown
CUST_15426_PI429285431	0.9122222	A	0.907931	A	1.00297886119678	0	lncRNA	17111-1_{1..721}	lnc-EXOC2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXOC2-3:1	chr6	   285915	   286635	-	lnc-EXOC2-3	lnc-EXOC2-3:1	XLOC_005567	linc-PDCD2-1	DUSP22	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50chr6:292101-296279"	NA	inter
CUST_17608_PI429285431	6.125873	P	6.2760005	P	0.901170816980089	0	lncRNA	19331-1_{1..248}	lnc-SLC7A11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC7A11-1:1	chr4	139207194	139207441	-	lnc-SLC7A11-1	lnc-SLC7A11-1:1	XLOC_004093	linc-SLC7A11-1	NA	NA	NA	inter
LNCA_21_P0011436	0.91667783	A	0.92328227	A	0.995432613414244	0	lncRNA	TCONS_l2_00009698	NA	NA	NA	NA	XLOC_l2_005194	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005194), lincRNA [TCONS_l2_00009698]"	chr16:33582309-33582368	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00009698	TCONS_l2_00009698	chr16	 33582309	 33582368	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17273_PI429285431	0.8982282	A	0.9028822	A	0.996779290669046	0	lncRNA	18991-1_{1..468}	lnc-CMPK2-13:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMPK2-13:2	chr2	  5831319	  5831786	-	lnc-CMPK2-13	lnc-CMPK2-13:2	XLOC_001958	linc-RNASEH1-2	SOX11	NA	chr2:5832799-5841517	inter
LNCA_21_P0011445	0.91896486	A	0.9242555	A	0.996339523737903	0	lncRNA	TCONS_l2_00009830	NA	NA	NA	NA	XLOC_l2_005287	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005287), lincRNA [TCONS_l2_00009830]"	chr16:73454619-73455027	hs|16q22.3	Agilent_HUMAN_G3V2	TCONS_l2_00009830	TCONS_l2_00009830	chr16	 73454619	 73455027	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40044_PI429285431	7.6807537	P	7.397284	P	1.21711855292103	0	lncRNA	40897-1_{1..2319}	n407245|NR_026711_2|lncRNA|Homosapiens||RefGeneNoncode|NR_026711_2||0.4637510|-0.1512943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n407245|NR_026711_2|lncRNA|Homosapiens||RefGeneNoncode|NR_026711_2||0.4637510|-0.1512943	chrX	  1519423	  1521741	+	NA	NA	NA	NA	SLC25A6	"hg19_refFlat_ASMTL:range=chrX:1522162-15611295'pad=0,hg19_refFlat_ASMTL:range=chrX:1522162-15611295'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ASMTL:range=chrX:1522162-15717335'pad=0,hg19_refFlat_ASMTL:range=chrX:1522162-15717335'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_ASMTL:range=chrY:1472162-15111295'pad=0,hg19_refFlat_ASMTL:range=chrY:1472162-15111295'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ASMTL:range=chrY:1472162-15217335'pad=0,hg19_refFlat_ASMTL:range=chrY:1472162-15217335'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30chrX:1509423-1511039"	NA	inner
CUST_22408_PI429285431	0.9117466	A	0.90462095	A	1.00495134178756	0	lncRNA	23997-1_{1..566}	lnc-C14orf126-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C14orf126-6:2	chr14	 32887014	 32887579	-	lnc-C14orf126-6	lnc-C14orf126-6:2	ENSG00000258580.1	RP11-320M16.2	AKAP6	NA	chr14:32877014-32897169	inner
CUST_24964_PI429285431	6.2611284	P	6.5111976	P	0.840856081964458	0	lncRNA	26502-1_{1..482}	lnc-ZNF655-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ZNF655-1:3	chr7	 99203087	 99203568	+	lnc-ZNF655-1	lnc-ZNF655-1:3	ENSG00000244219.1	GS1-259H13.2	LOC100289187	NA	chr7:99195902-99208456	inner
CUST_3171_PI429285431	0.917344	M	0.93054634	A	0.990890579726426	0	lncRNA	3150-1_{1..2367}	"transcript_id ""ENST00000520259.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520259.1"" | genecode_v17"	chr8	 71383369	 71385735	+	ENSG00000253967.1	ENST00000520259.1	RP11-333A23.4	RP11-333A23.4-001	NA	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90"	NA	inter
CUST_11410_PI429285431	1.2132812	A	0.982815	A	1.17321400647635	0	lncRNA	12976-1_{1..499}	lnc-USPL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USPL1-2:1	chr13	 30919093	 30919591	+	lnc-USPL1-2	lnc-USPL1-2:1	XLOC_010335	linc-USPL1-2	NA	NA	NA	inter
CUST_17461_PI429285431	1.1087079	A	1.6252629	A	0.699039071622977	0	lncRNA	19186-1_{1..257}	lnc-FABP5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FABP5-1:1	chr8	 82306203	 82306459	+	lnc-FABP5-1	lnc-FABP5-1:1	XLOC_006859	linc-CHMP4C-2	NA	NA	NA	inter
CUST_9765_PI429285431	0.9196146	A	0.95058537	A	0.978761480581534	0	lncRNA	11282-1_{1..459}	lnc-BMI1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BMI1-2:1	chr10	 22743095	 22743553	+	lnc-BMI1-2	lnc-BMI1-2:1	XLOC_008410	linc-ARMC3-2	NA	NA	NA	inter
CUST_23400_PI429285431	6.1736183	P	6.0893683	P	1.06013647513333	0	lncRNA	24968-1_{1..465}	lnc-ANKRD13B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ANKRD13B-1:1	chr17	 27897456	 27897920	+	lnc-ANKRD13B-1	lnc-ANKRD13B-1:1	ENSG00000264290.1	RP11-68I3.4	GIT1	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-62.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-58.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70chr17:27900487-27907537"	NA	inner
LNCA_21_P0007313	0.9230898	A	0.92193794	A	1.00079872732432	0	lncRNA	TCONS_00019566	NA	NA	NA	NA	XLOC_009361	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009361), lincRNA [TCONS_00019566]"	chr11:2900693-2900634	hs|11p15.4	Agilent_HUMAN_G3V2	TCONS_00019566	TCONS_00019566	chr11	  2900634	  2900693	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1324_PI429285431	0.92277795	A	2.4982796	A	0.335526437067801	0	lncRNA	1313-1_{1..491}	"transcript_id ""ENST00000425195.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425195.1"" | genecode_v17"	chr3	 27844253	 27844743	+	ENSG00000225548.1	ENST00000425195.1	AC098973.2	AC098973.2-001	NA	NA	NA	inter
CUST_31753_PI429285431	8.952262	P	8.983729	P	0.978424883257696	0	lncRNA	33493-1_{1..350}	n338289|AF064078|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|682|NULL|0.0437965|-0.1013995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338289|AF064078|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|682|NULL|0.0437965|-0.1013995	chr1	156828328	156828677	-	NA	NA	NA	NA	NTRK1	NA	chr1:156818328-156838666	inner
CUST_37155_PI429285431	3.2012298	P	2.0521903	A	2.21766200443849	0	lncRNA	38273-1_{1..634}	n345592|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1141|NULL|-1.4738100|-0.4065723	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345592|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1141|NULL|-1.4738100|-0.4065723	chr3	105803220	105803853	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36202_PI429285431	1.5531144	A	1.3373395	A	1.16132751884043	0	lncRNA	37460-1_{1..3000}	n344749|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_298|NULL|-1.3984900|-0.4049139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344749|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_298|NULL|-1.3984900|-0.4049139	chr2	152643936	152646935	-	NA	NA	NA	NA	ARL5A	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40chr2:152657480-152659559"	NA	inter
CUST_5912_PI429285431	5.267901	P	5.502659	P	0.849827538629505	0	lncRNA	5843-1_{1..2483}	"transcript_id ""ENST00000582096.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582096.1"" | genecode_v17"	chr17	 56066400	 56068882	-	ENSG00000264112.1	ENST00000582096.1	RP11-159D12.2	RP11-159D12.2-003	SRSF1	NA	chr17:56078280-56078882	inter
CUST_48404_PI429285431	1.3675752	A	0.97018254	A	1.31712535683116	0	lncRNA	52257-1_{1..1137}	hg19_lincRNAsTranscripts_TCONS_l2_00000551 range=chr1:142818799-142826503 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000551 range=chr1:142818799-142826503 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	142818799	142819935	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6168_PI429285431	10.992505	P	12.1281395	P	0.455134703671073	0	lncRNA	6092-2_{3001..3324}	"transcript_id ""ENST00000585627.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000585627.1"" | genecode_v17"	chr18	 39769633	 39769956	+	ENSG00000267586.2	ENST00000585627.1	RP11-21F16.1	RP11-21F16.1-002	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30"	NA	inter
CUST_31948_PI429285431	2.927886	A	3.3671527	P	0.737509378219729	0	lncRNA	33674-2_{3001..3409}	n338504|AK092969|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|901|NULL|-0.8751830|-0.2062061	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338504|AK092969|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|901|NULL|-0.8751830|-0.2062061	chr1	207989921	207990329	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012151	2.2971203	A	2.6543136	A	0.780681885663957	0	lncRNA	AK091704	NA	AK091704	NA	Hs.729646	LOC149773	uncharacterized LOC149773	NA	THC2493341	NA	"BROAD Institute lincRNA (XLOC_l2_008688), lincRNA [TCONS_l2_00016803]"	chr20:57099707-57099766	hs|20q13.32	Agilent_HUMAN_G3V2	AK091704	AK091704	chr20	 57099707	 57099766	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11037_PI429285431	0.8944543	A	1.1084652	A	0.862137031285397	0	lncRNA	12583-1_{1..326}	lnc-ARMCX3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARMCX3-2:1	chrX	100919026	100919351	+	lnc-ARMCX3-2	lnc-ARMCX3-2:1	XLOC_008029	linc-TCEAL2	ARMCX2	NA	chrX:100910267-100914863	inter
CUST_44075_PI429285431	5.561906	P	5.8698025	P	0.807818729038749	0	lncRNA	48744-1_{1..3000}	"gi|381214355|ref|NR_046476.1| Homo sapiens DIS3 mitotic control homolog (S. cerevisiae)-like 2 (DIS3L2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|381214355|ref|NR_046476.1| Homo sapiens DIS3 mitotic control homolog (S. cerevisiae)-like 2 (DIS3L2), transcript variant 4, non-coding RNA"	Chr2	232826293	232829292	+	129563	NR_046476.1	NA	NA	NA	NA	NA	inter
CUST_25428_PI429285431	5.0838337	P	5.2955728	P	0.863495700830807	0	lncRNA	26958-1_{1..358}	lnc-ZNF687-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF687-1:1	chr1	151314340	151314697	+	lnc-ZNF687-1	lnc-ZNF687-1:1	ENSG00000224645.1	RP11-126K1.8	RFX5	NA	chr1:151313116-151319769	inner
CUST_1992_PI429285431	1.350927	A	1.5753586	A	0.855932183580006	0	lncRNA	1983-1_{1..512}	"transcript_id ""ENST00000507011.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507011.1"" | genecode_v17"	chr4	178650792	178651303	-	ENSG00000251504.1	ENST00000507011.1	RP11-162G9.1	RP11-162G9.1-001	NA	NA	NA	inter
CUST_38778_PI429285431	0.90149075	A	0.8965703	A	1.00341641874502	0	lncRNA	39770-1_{1..2139}	n384418|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003gjt.1||0.2648000|-0.2746937	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384418|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003gjt.1||0.2648000|-0.2746937	chr4	  6945337	  6947475	+	NA	NA	NA	NA	TBC1D14	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.21;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-24.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80chr4:6935337-6957476"	NA	inner
CUST_3326_PI429285431	0.88991827	A	0.88935083	A	1.00039339679637	0	lncRNA	3305-1_{1..602}	"transcript_id ""ENST00000524070.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524070.1"" | genecode_v17"	chr8	136246480	136247081	+	ENSG00000254083.1	ENST00000524070.1	RP11-452N4.1	RP11-452N4.1-002	NA	NA	NA	inter
CUST_48967_PI429285431	2.6731315	A	3.4672008	P	0.57671509929741	0	lncRNA	52806-1_{1..1004}	hg19_lincRNAsTranscripts_TCONS_l2_00019675 range=chr3:193727787-193764597 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019675 range=chr3:193727787-193764597 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	193727787	193728790	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24218_PI429285431	5.191441	P	5.674456	P	0.715480820970077	0	lncRNA	25769-1_{1..360}	lnc-SMG1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMG1-1:2	chr16	 19078873	 19079232	-	lnc-SMG1-1	lnc-SMG1-1:2	ENSG00000261465.2	RP11-626G11.5	TMC7	NA	chr16:19068873-19075264	inner
CUST_51236_PI429285431	2.4768271	A	2.2444105	A	1.17480116383147	0	lncRNA	54849-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00008922 range=chr15:23095153-23158364 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008922 range=chr15:23095153-23158364 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 23098153	 23101152	-	NA	NA	NA	NA	NIPA1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_GOLGA6L6:range=chr15:20739497-207470235'pad=0,hg19_refFlat_GOLGA6L6:range=chr15:20739497-207470235'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_GOLGA6L1:range=chr15:22736337-227442785'pad=0,hg19_refFlat_GOLGA6L1:range=chr15:22736337-227442785'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-62.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_LOC440243:range=chr15:23571396-235792885'pad=0,hg19_refFlat_LOC440243:range=chr15:23571396-235792885'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40chr15:23085153-23086843"	NA	inter
CUST_4590_PI429285431	0.89760435	A	0.8970771	A	1.00036552864027	0	lncRNA	4539-1_{1..382}	"transcript_id ""ENST00000452207.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452207.1"" | genecode_v17"	chr13	 34231573	 34231954	+	ENSG00000232986.1	ENST00000452207.1	RP11-179A7.2	RP11-179A7.2-001	NA	NA	NA	inner
CUST_1440_PI429285431	0.9225554	A	0.9061175	A	1.0114590415667	0	lncRNA	1429-1_{1..1563}	"transcript_id ""ENST00000486726.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000486726.2"" | genecode_v17"	chr3	112115494	112117056	-	ENSG00000243081.2	ENST00000486726.2	RP11-231E6.1	RP11-231E6.1-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90"	NA	inter
LNCA_21_P0001310	0.90783644	A	0.89833146	A	1.00661010100804	0	lncRNA	TCONS_00000964	NA	NA	NA	NA	XLOC_000223	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000223), lincRNA [TCONS_00000964]"	chr1:60542920-60542979	hs|1p32.1	Agilent_HUMAN_G3V2	TCONS_00000964	TCONS_00000964	chr1	 60542920	 60542979	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11229_PI429285431	5.5876846	P	5.617338	P	0.979655626500099	0	lncRNA	12787-1_{1..1970}	lnc-RHPN1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RHPN1-4:1	chr8	144509529	144511498	+	lnc-RHPN1-4	lnc-RHPN1-4:1	XLOC_006953	linc-GSDMD-1	ZC3H3	NA	chr8:144519825-144521408	inner
CUST_36654_PI429285431	0.9832842	A	0.8931675	A	1.06445628313346	0	lncRNA	37845-1_{1..884}	n345150|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_699|NULL|-1.3385300|-0.2079226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345150|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_699|NULL|-1.3385300|-0.2079226	chr11	 88111676	 88112559	-	NA	NA	NA	NA	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
CUST_45766_PI429285431	2.5016062	A	2.7076428	A	0.866915570292663	0	lncRNA	50111-1_{1..810}	"gi|378548185|ref|NR_046375.1| Homo sapiens MRVI1 antisense RNA 1 (MRVI1-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378548185|ref|NR_046375.1| Homo sapiens MRVI1 antisense RNA 1 (MRVI1-AS1), transcript variant 2, non-coding RNA"	Chr11	 10562783	 10563592	+	100129827	NR_046375.1	NA	NA	NA	"hg19_refFlat_MRVI1:range=chr11:10597879-106737695'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-106737695'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_MRVI1:range=chr11:10597879-107151495'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-107151495'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_MRVI1:range=chr11:10597879-106555705'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-106555705'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_MRVI1:range=chr11:10597879-106479355'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-106479355'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50"	NA	inter
CUST_15800_PI429285431	1.2946434	A	0.9132747	A	1.3025770380069	0	lncRNA	17491-1_{1..3000}	lnc-KHDRBS3-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KHDRBS3-6:1	chr8	135734039	135737038	+	lnc-KHDRBS3-6	lnc-KHDRBS3-6:1	XLOC_006933	linc-KHDRBS3-5	ZFAT	NA	chr8:135724039-135725292	inter
LNCA_21_P0013592	0.9140014	A	0.8968449	A	1.01196297032034	0	lncRNA	TCONS_l2_00028837	NA	NA	NA	NA	XLOC_l2_014850	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014850), lincRNA [TCONS_l2_00028837]"	chr9:74960783-74960842	hs|9q21.13	Agilent_HUMAN_G3V2	TCONS_l2_00028837	TCONS_l2_00028837	chr9	 74960783	 74960842	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38450_PI429285431	1.0716939	A	1.6764542	A	0.657580626324461	0	lncRNA	39471-1_{1..2150}	n382699|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bkn.1||1.1849100|-0.2468068	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382699|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bkn.1||1.1849100|-0.2468068	chr15	 85070426	 85072575	-	NA	NA	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.64;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-54.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60"	NA	inter
CUST_477_PI429285431	0.89763415	A	0.8923856	A	1.00364464325295	0	lncRNA	468-1_{1..760}	"transcript_id ""ENST00000439184.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439184.1"" | genecode_v17"	chr1	170143544	170144303	+	ENSG00000233985.1	ENST00000439184.1	RP11-297H3.3	RP11-297H3.3-001	METTL11B	NA	chr1:170133544-170136923	inter
LNCA_21_P0001625	0.9062188	A	0.8963662	A	1.00685267476996	0	lncRNA	TCONS_00001827	NA	NA	NA	NA	XLOC_001208	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001208), lincRNA [TCONS_00001827]"	chr1:219582882-219582823	hs|1q41	Agilent_HUMAN_G3V2	TCONS_00001827	TCONS_00001827	chr1	219582823	219582882	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36333_PI429285431	1.1197866	A	0.89921284	A	1.1651968932854	0	lncRNA	37564-1_{1..1762}	n344861|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_410|NULL|-1.3203400|-0.3382903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344861|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_410|NULL|-1.3203400|-0.3382903	chr5	153815560	153817321	-	NA	NA	NA	NA	SAP30L	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10chr5:153825517-153833040"	NA	inter
CUST_45073_PI429285431	5.97888	P	5.9248385	P	1.03816913367987	0	lncRNA	49557-2_{3001..6000}	"gi|380692324|ref|NR_046443.1| Homo sapiens centrosomal protein 41kDa (CEP41), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|380692324|ref|NR_046443.1| Homo sapiens centrosomal protein 41kDa (CEP41), transcript variant 5, non-coding RNA"	NW_003871065.1	    52189	    55188	-	95681	NR_046443.1	NA	NA	NA	NA	NA	Unknown
CUST_27540_PI429285431	9.073741	P	8.918104	P	1.11391334111739	0	lncRNA	29115-1_{1..555}	n324724|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319602|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319602|-0.7626240|-0.2019884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324724|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319602|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319602|-0.7626240|-0.2019884	chr22	 18970888	 18971442	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60"	NA	inter
CUST_44137_PI429285431	0.8911378	A	0.889354	A	1.00123720064274	0	lncRNA	48800-1_{1..544}	"gi|388490201|ref|NR_049771.1| Homo sapiens OSBPL10 antisense RNA 1 (OSBPL10-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|388490201|ref|NR_049771.1| Homo sapiens OSBPL10 antisense RNA 1 (OSBPL10-AS1), non-coding RNA"	Chr3	 31745705	 31746248	+	100874206	NR_049771.1	NA	NA	NA	NA	NA	inter
CUST_19454_PI429285431	0.9085479	A	0.9055599	A	1.00207327003383	0	lncRNA	21113-1_{1..903}	lnc-SESN3-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SESN3-2:4	chr11	 94706662	 94707564	-	lnc-SESN3-2	lnc-SESN3-2:4	ENSG00000150316.7	CWC15	KDM4D	NA	chr11:94706845-94716736	inner
CUST_17240_PI429285431	2.0738173	A	2.4685345	A	0.76063846389804	0	lncRNA	18958-1_{1..1313}	lnc-MIA3-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MIA3-2:3	chr1	222765508	222766820	+	lnc-MIA3-2	lnc-MIA3-2:3	XLOC_000576	linc-MIA3-1	TAF1A	NA	chr1:222755508-222763275	inter
CUST_50494_PI429285431	1.5483317	A	1.2556009	A	1.22495673950468	0	lncRNA	54190-3_{6001..6383}	hg19_lincRNAsTranscripts_TCONS_l2_00030309 range=chrX:102156536-102171898 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030309 range=chrX:102156536-102171898 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	102162536	102162918	+	NA	NA	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-22.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90"	NA	inter
CUST_35867_PI429285431	1.6060649	A	0.8919048	A	1.64052786636745	0	lncRNA	37260-1_{1..976}	n344532|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_80|NULL|-1.3068600|-0.2207123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344532|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_80|NULL|-1.3068600|-0.2207123	chrX	136004248	136005223	+	NA	NA	NA	NA	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60"	NA	inter
CUST_40923_PI429285431	0.9089883	A	0.9082593	A	1.00050543198235	0	lncRNA	41608-2_{3001..4103}	n410790|NR_038244|lncRNA|Homosapiens||RefGeneNoncode|NR_038244||-1.2138100|-0.4061654	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410790|NR_038244|lncRNA|Homosapiens||RefGeneNoncode|NR_038244||-1.2138100|-0.4061654	chr6	146139011	146140113	+	NA	NA	NA	NA	SHPRH	NA	chr6:146205943-146217721	inner
LNCA_21_P0007279	1.0611438	A	0.8994818	A	1.11857500639082	0	lncRNA	TCONS_00019480	NA	NA	NA	NA	XLOC_009283	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009283), lincRNA [TCONS_00019480]"	chr11:115628021-115628080	hs|11q23.3	Agilent_HUMAN_G3V2	TCONS_00019480	TCONS_00019480	chr11	115628021	115628080	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18040_PI429285431	1.2038013	A	0.913455	A	1.22293379166146	0	lncRNA	19776-1_{1..3000}	lnc-TPRA1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPRA1-1:2	chr3	127254029	127257028	-	lnc-TPRA1-1	lnc-TPRA1-1:2	XLOC_003240	linc-TXNRD3-3	NA	NA	NA	inter
CUST_46820_PI429285431	1.4954879	A	1.6351198	A	0.907750736082486	0	lncRNA	50960-1_{1..2176}	"gi|338968915|ref|NR_040111.1| Homo sapiens uncharacterized LOC100505782 (LOC100505782), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|338968915|ref|NR_040111.1| Homo sapiens uncharacterized LOC100505782 (LOC100505782), non-coding RNA"	NW_003315953.1	    20348	    22523	-	100505782	NR_040111.1	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90"	NA	Unknown
CUST_17450_PI429285431	0.895234	A	0.8913814	A	1.00267398757216	0	lncRNA	19173-1_{1..974}	lnc-SLC39A11-1:25	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC39A11-1:25	chr17	 70338247	 70339220	-	lnc-SLC39A11-1	lnc-SLC39A11-1:25	XLOC_012567	linc-ABCA5-5	NA	NA	NA	inter
CUST_18941_PI429285431	3.2005007	P	3.7160833	P	0.699510394186139	0	lncRNA	20632-1_{1..573}	lnc-CHST1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHST1-5:2	chr11	 45563994	 45564566	-	lnc-CHST1-5	lnc-CHST1-5:2	ENSG00000254746	RP11-958J22.1	NA	NA	NA	inter
CUST_25923_PI429285431	0.9170758	A	0.9001542	A	1.01179821564661	0	lncRNA	27442-1_{1..475}	lnc-STT3B-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STT3B-1:7	chr3	 31762884	 31763358	+	lnc-STT3B-1	lnc-STT3B-1:7	ENSG00000232490.2	OSBPL10-AS1	OSBPL10	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90chr3:31752884-31773066"	NA	inner
CUST_48897_PI429285431	6.886351	P	5.9014406	P	1.97919038943997	0	lncRNA	52737-1_{1..834}	hg19_lincRNAsTranscripts_TCONS_l2_00019431 range=chr3:106824691-106825838 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019431 range=chr3:106824691-106825838 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	106824691	106825524	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24102_PI429285431	0.9155797	A	0.91097987	A	1.00319344741899	0	lncRNA	25653-1_{1..354}	lnc-CHRM4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHRM4-1:1	chr11	 46295932	 46296285	-	lnc-CHRM4-1	lnc-CHRM4-1:1	ENSG00000255007.1	CTD-2589M5.4	CREB3L1	NA	chr11:46299228-46306098	inter
CUST_4630_PI429285431	0.92016065	A	0.90682715	A	1.00928491780903	0	lncRNA	4576-1_{1..800}	"transcript_id ""ENST00000454780.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454780.2"" | genecode_v17"	chr13	 58785831	 58786630	-	ENSG00000232954.2	ENST00000454780.2	RP11-538C21.1	RP11-538C21.1-001	NA	NA	NA	inter
CUST_28154_PI429285431	0.91588295	A	0.9196894	A	0.997365047512077	0	lncRNA	29779-1_{1..321}	n325430|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323601|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323601|-1.3681500|-0.3677922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325430|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323601|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323601|-1.3681500|-0.3677922	chr2	 12064750	 12065070	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80"	NA	inter
CUST_49538_PI429285431	3.9212823	P	2.9286714	A	1.98978271976627	0	lncRNA	53330-1_{1..1660}	hg19_lincRNAsTranscripts_TCONS_l2_00024251 range=chr6:52442138-52448773 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024251 range=chr6:52442138-52448773 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 52442138	 52443797	+	NA	NA	NA	NA	TRAM2	NA	chr6:52432138-52441862	inter
CUST_34166_PI429285431	0.89439255	A	0.8923228	A	1.00143567096721	0	lncRNA	35683-1_{1..1802}	n341010|AF116635|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3476|NULL|-1.2506900|-0.3350679	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341010|AF116635|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3476|NULL|-1.2506900|-0.3350679	chr11	 33894740	 33896541	+	NA	NA	NA	NA	LMO2	NA	chr11:33884740-33906541	inner
CUST_9897_PI429285431	1.089204	A	1.4117475	A	0.7996588197182	0	lncRNA	11421-1_{1..238}	lnc-THSD4-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THSD4-3:3	chr15	 72101798	 72102035	+	lnc-THSD4-3	lnc-THSD4-3:3	XLOC_011300	linc-NR2E3-1	NR2E3	NA	chr15:72102894-72110600	inter
CUST_2714_PI429285431	0.90571994	A	0.9152321	A	0.993428361402503	0	lncRNA	2699-1_{1..455}	"transcript_id ""ENST00000424343.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424343.1"" | genecode_v17"	chr6	168625959	168626413	-	ENSG00000237987.1	ENST00000424343.1	RP11-503C24.2	RP11-503C24.2-001	NA	NA	NA	inter
CUST_13909_PI429285431	0.9026132	A	0.9868521	A	0.943282037190101	0	lncRNA	15556-1_{1..229}	lnc-TBC1D19-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBC1D19-2:1	chr4	 26784653	 26784881	+	lnc-TBC1D19-2	lnc-TBC1D19-2:1	XLOC_003481	linc-STIM2-3	NA	NA	NA	inter
LNCA_21_P0009050	3.8840487	P	4.420528	P	0.689451369573525	0	lncRNA	TCONS_00024702	NA	NA	NA	NA	XLOC_011980	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011980), lincRNA [TCONS_00024702]"	chr16:66165675-66165616	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024702	TCONS_00024702	chr16	 66165616	 66165675	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32213_PI429285431	3.3412375	P	2.0075798	A	2.52040870926052	0	lncRNA	33906-2_{3001..4286}	n338787|S57283|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1209|NULL|3.7329900|-0.3072889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338787|S57283|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1209|NULL|3.7329900|-0.3072889	chr13	 78472615	 78473900	-	NA	NA	NA	NA	EDNRB	NA	chr13:78469616-78493903	inner
CUST_46445_PI429285431	7.0299187	P	5.5838985	P	2.7245542170588	0	lncRNA	50652-2_{3001..3275}	"gi|388596662|ref|NR_051953.1| Homo sapiens Meis homeobox 2 (MEIS2), transcript variant e, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388596662|ref|NR_051953.1| Homo sapiens Meis homeobox 2 (MEIS2), transcript variant e, non-coding RNA"	Chr15	 37186222	 37186496	-	4212	NR_051953.1	NA	NA	NA	NA	NA	inter
CUST_25371_PI429285431	1.4789011	A	1.437102	A	1.02939672659394	0	lncRNA	26902-1_{1..1612}	lnc-NOC3L-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NOC3L-3:1	chr10	 95868115	 95869726	-	lnc-NOC3L-3	lnc-NOC3L-3:1	ENSG00000232913.1	RP11-429H9.4	PLCE1	NA	chr10:95858115-95878542	inner
LNCA_21_P0003037	2.0816047	A	3.0842118	P	0.499097263907456	0	lncRNA	TCONS_00006249	NA	NA	NA	NA	XLOC_002845	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002845), lincRNA [TCONS_00006249]"	chr3:142652815-142652874	hs|3q23	Agilent_HUMAN_G3V2	TCONS_00006249	TCONS_00006249	chr3	142652815	142652874	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31827_PI429285431	1.3032262	A	2.500854	A	0.435991586459641	0	lncRNA	33563-1_{1..3000}	n338374|AB007979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|769|NULL|-0.8670110|-0.2640459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338374|AB007979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|769|NULL|-0.8670110|-0.2640459	chr1	175284332	175287331	-	NA	NA	NA	NA	TNR	NA	chr1:175291935-175299747	inter
CUST_19749_PI429285431	2.6303797	A	2.5107179	A	1.0864801374148	0	lncRNA	21407-1_{1..663}	lnc-AMIGO2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AMIGO2-2:1	chr12	 47672699	 47673361	-	lnc-AMIGO2-2	lnc-AMIGO2-2:1	ENSG00000257925.1	RP11-493L12.3	NA	NA	NA	inter
CUST_3974_PI429285431	6.8396378	P	7.505951	P	0.630114886971547	0	lncRNA	3943-2_{3001..6000}	"transcript_id ""ENST00000501122.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000501122.2"" | genecode_v17"	chr11	 65193269	 65196268	+	ENSG00000245532.3	ENST00000501122.2	NEAT1	NEAT1-001	FRMD8	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr11:65180269-65180996"	NA	inter
CUST_6041_PI429285431	4.115248	P	4.8680844	P	0.59343568995467	0	lncRNA	5967-1_{1..607}	"transcript_id ""ENST00000582570.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582570.1"" | genecode_v17"	chr18	  1368090	  1368696	-	ENSG00000132204.9	ENST00000582570.1	LINC00470	LINC00470-008	NA	NA	NA	inter
CUST_20703_PI429285431	0.94181	A	0.9435543	A	0.998791673987432	0	lncRNA	22339-1_{1..240}	lnc-C2orf84-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf84-1:1	chr2	 24438969	 24439208	+	lnc-C2orf84-1	lnc-C2orf84-1:1	ENSG00000242628.1	AC009228.1	ITSN2	"hg19_refFlat_ITSN2:range=chr2:24426495-245509515'pad=0,hg19_refFlat_ITSN2:range=chr2:24426495-245509515'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30chr2:24428969-24449163"	NA	inner
CUST_47577_PI429285431	0.8997958	A	0.89335847	A	1.004471986761	0	lncRNA	51581-1_{1..556}	"gi|373938421|ref|NR_046101.1| Homo sapiens chromosome X open reading frame 31 (CXorf31), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373938421|ref|NR_046101.1| Homo sapiens chromosome X open reading frame 31 (CXorf31), non-coding RNA"	NW_004166866.1	   136978	   137533	-	724087	NR_046101.1	NA	NA	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90"	NA	Unknown
CUST_50230_PI429285431	6.814969	P	6.729433	P	1.06108188859835	0	lncRNA	53954-1_{1..925}	hg19_lincRNAsTranscripts_TCONS_l2_00028767 range=chr9:67288403-67332593 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028767 range=chr9:67288403-67332593 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 67288403	 67289327	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49908_PI429285431	3.885772	P	4.83712	P	0.517149031496341	0	lncRNA	53657-1_{1..412}	hg19_lincRNAsTranscripts_TCONS_l2_00026102 range=chr7:93693762-93696062 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026102 range=chr7:93693762-93696062 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 93693762	 93694173	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12664_PI429285431	0.8961444	A	1.4199764	A	0.695521973787417	0	lncRNA	14280-1_{1..1145}	lnc-S1PR1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-S1PR1-2:1	chr1	101629699	101630843	+	lnc-S1PR1-2	lnc-S1PR1-2:1	XLOC_000318	linc-S1PR1	NA	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_23826_PI429285431	13.999138	P	14.538401	P	0.688122346233779	0	lncRNA	25389-1_{1..787}	lnc-SNX20-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNX20-5:1	chr16	 50836948	 50837734	-	lnc-SNX20-5	lnc-SNX20-5:1	ENSG00000260616.2	RP11-327F22.4	CYLD	NA	chr16:50826948-50835846	inter
CUST_38480_PI429285431	0.9073521	A	0.9231797	A	0.989089104056584	0	lncRNA	39498-1_{1..1570}	n382984|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002edx.3||1.7317300|-0.2757383	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382984|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002edx.3||1.7317300|-0.2757383	chr16	 34711784	 34713353	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22497_PI429285431	6.492986	P	6.925968	P	0.740729140770185	0	lncRNA	24084-1_{1..389}	lnc-C16orf13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf13-1:1	chr16	   698955	   699343	-	lnc-C16orf13-1	lnc-C16orf13-1:1	ENSG00000228201.1	AL022341.3	WDR90	NA	chr16:699363-709200	inter
CUST_50740_PI429285431	0.90871626	A	0.9154979	A	0.995310356234528	0	lncRNA	54408-1_{1..918}	hg19_lincRNAsTranscripts_TCONS_l2_00004051 range=chr10:124580000-124585964 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004051 range=chr10:124580000-124585964 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	124580000	124580917	+	NA	NA	NA	NA	CUZD1	NA	chr10:124591671-124595964	inter
CUST_31332_PI429285431	4.558584	P	4.127101	P	1.34861916049361	0	lncRNA	33115-1_{1..3000}	n337799|S68616|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|181|NULL|12.8869000|-0.1050973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337799|S68616|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|181|NULL|12.8869000|-0.1050973	chr1	 27425306	 27428305	-	NA	NA	NA	NA	SLC9A1	NA	chr1:27425300-27481451	inter
CUST_16741_PI429285431	5.212431	P	5.438057	P	0.855223854862691	0	lncRNA	18448-1_{1..1222}	lnc-CRIPT-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRIPT-1:2	chr2	 46877186	 46878407	+	lnc-CRIPT-1	lnc-CRIPT-1:2	XLOC_001457	linc-SOCS5	NA	NA	NA	inter
CUST_21678_PI429285431	0.92293286	A	0.9168613	A	1.00421735280338	0	lncRNA	23288-1_{1..445}	lnc-GGCT-1:22	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GGCT-1:22	chr7	 30601082	 30601526	-	lnc-GGCT-1	lnc-GGCT-1:22	ENSG00000196295.5	AC005154.6	NA	NA	NA	inter
CUST_45142_PI429285431	7.98956	P	7.531111	P	1.37406380726656	0	lncRNA	49622-1_{1..2192}	"gi|134133286|ref|NR_003494.1| Homo sapiens family with sequence similarity 86, member B1 (FAM86B1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|134133286|ref|NR_003494.1| Homo sapiens family with sequence similarity 86, member B1 (FAM86B1), transcript variant 2, non-coding RNA"	Chr8	 12039613	 12041804	-	85002	NR_003494.1	NA	NA	NA	"hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40"	NA	inter
LNCA_21_P0014735	0.92368335	A	0.92454237	A	0.999404749940607	0	lncRNA	XR_113120	XR_113120	XR_113120	NA	NA	LOC100507207	uncharacterized LOC100507207	NA	THC2627464	NA	"PREDICTED: Homo sapiens hypothetical LOC100507207 (LOC100507207), miscRNA [XR_113120]"	chr8:24737276-24737335	hs|8p21.2	Agilent_HUMAN_G3V2	XR_113120	XR_113120	chr8	 24737276	 24737335	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013207	0.9202342	A	0.9246987	A	0.996910227614299	0	lncRNA	TCONS_l2_00025918	NA	NA	NA	NA	XLOC_l2_013434	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013434), lincRNA [TCONS_l2_00025918]"	chr7:63167352-63167411	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025918	TCONS_l2_00025918	chr7	 63167352	 63167411	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004687	5.5122538	P	6.0324945	P	0.697255492996884	0	lncRNA	ENST00000452888	NA	NA	NA	NA	XLOC_005469	NA	ENST00000452888	NA	NA	"BROAD Institute lincRNA (XLOC_005469), lincRNA [TCONS_00011377]"	chr6:134963574-134963633	hs|6q23.2	Agilent_HUMAN_G3V2	ENST00000452888	ENST00000452888	chr6	134963574	134963633	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12053_PI429285431	5.39153	P	5.8494353	P	0.728042562400606	0	lncRNA	13639-1_{1..3000}	lnc-MBIP-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBIP-2:4	chr14	 36623577	 36626576	-	lnc-MBIP-2	lnc-MBIP-2:4	XLOC_010996	linc-RALGAPA1-4	NA	NA	NA	inter
LNCA_21_P0008076	0.9218344	A	0.9247561	A	0.997976881151905	0	lncRNA	TCONS_00021816	NA	NA	NA	NA	XLOC_010416	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010416), lincRNA [TCONS_00021816]"	chr13:66585024-66628131	hs|13q21.32	Agilent_HUMAN_G3V2	TCONS_00021816	TCONS_00021816	chr13	 66585024	 66628131	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22600_PI429285431	4.6988573	P	5.2256007	P	0.694119805765312	0	lncRNA	24184-1_{1..424}	lnc-SEC14L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC14L1-1:1	chr17	 75095100	 75095523	+	lnc-SEC14L1-1	lnc-SEC14L1-1:1	ENSG00000234912.3	LINC00338	SEC14L1	NA	chr17:75085100-75105256	inner
CUST_44219_PI429285431	4.6536922	P	5.486092	P	0.56159430080085	0	lncRNA	48870-1_{1..771}	"gi|333805629|ref|NR_038266.1| Homo sapiens MYLK antisense RNA 1 (MYLK-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|333805629|ref|NR_038266.1| Homo sapiens MYLK antisense RNA 1 (MYLK-AS1), non-coding RNA"	Chr3	123304403	123305173	+	100506826	NR_038266.1	NA	NA	NA	"hg19_refFlat_MYLK:range=chr3:123332952-1235126885'pad=0,hg19_refFlat_MYLK:range=chr3:123332952-1235126885'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30"	NA	inter
CUST_42888_PI429285431	10.630383	P	10.403613	P	1.17021206688796	0	lncRNA	45976-1_{1..135}	ENST00000364674 ncrna:snoRNA chromosome:GRCh37:1:212526158:212526292:1 gene:ENSG00000201544 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364674 ncrna:snoRNA chromosome:GRCh37:1:212526158:212526292:1 gene:ENSG00000201544 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	212526158	212526292	+	ENSG00000201544	ENST00000364674	NA	NA	PPP2R5A	NA	chr1:212516158-212535205	inner
CUST_44451_PI429285431	0.90119946	A	0.9051604	A	0.997258251084429	0	lncRNA	49057-2_{3001..3835}	"gi|359279888|ref|NR_045582.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 11, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|359279888|ref|NR_045582.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 11, non-coding RNA"	Chr4	159445866	159446700	+	59350	NR_045582.1	NA	NA	NA	NA	NA	inter
CUST_6504_PI429285431	2.7290773	A	2.1384397	A	1.50591213920228	0	lncRNA	6446-1_{1..561}	"transcript_id ""ENST00000589653.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589653.1"" | genecode_v17"	chr19	 38307999	 38308559	+	ENSG00000267640.1	ENST00000589653.1	CTD-2554C21.2	CTD-2554C21.2-002	NA	NA	NA	inter
CUST_10022_PI429285431	5.498898	P	5.433017	P	1.0467239398977	0	lncRNA	11548-1_{1..384}	lnc-SLC35D3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC35D3-1:1	chr6	137320357	137320740	+	lnc-SLC35D3-1	lnc-SLC35D3-1:1	XLOC_005474	linc-TNFAIP3-6	IL20RA	NA	chr6:137321108-137330641	inter
CUST_13941_PI429285431	12.798451	P	13.083407	P	0.820766640560425	0	lncRNA	15588-1_{1..432}	lnc-STK35-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STK35-1:1	chr20	  2181141	  2181572	+	lnc-STK35-1	lnc-STK35-1:1	XLOC_013436	linc-TGM3-2	NA	NA	NA	inter
CUST_37764_PI429285431	2.7644296	A	3.6884708	P	0.527030660666019	0	lncRNA	38861-1_{1..1114}	n346272|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1822|NULL|-1.3112000|-0.1107601	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346272|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1822|NULL|-1.3112000|-0.1107601	chr12	  9446430	  9447543	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11194_PI429285431	0.9004388	A	0.9017665	A	0.999080131826729	0	lncRNA	12752-1_{1..230}	lnc-GUF1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GUF1-2:1	chr4	 45197444	 45197673	+	lnc-GUF1-2	lnc-GUF1-2:1	XLOC_003531	linc-GABRB1-1	NA	NA	NA	inter
CUST_20738_PI429285431	7.1995115	P	7.3251534	P	0.916596130271384	0	lncRNA	22372-1_{1..616}	lnc-APOH-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-APOH-1:3	chr17	 64411088	 64411703	-	lnc-APOH-1	lnc-APOH-1:3	ENSG00000264630.1	RP11-4F22.2	PRKCA	NA	chr17:64401088-64421091	inner
CUST_7176_PI429285431	4.4080386	P	5.1364007	P	0.603588782830032	0	lncRNA	7358-1_{1..299}	"transcript_id ""ENST00000410894.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410894.1"" | genecode_v17"	chr2	139621167	139621465	-	ENSG00000222826.1	ENST00000410894.1	RN7SKP286	RN7SKP286-201	NA	NA	NA	inter
CUST_38080_PI429285431	7.1604753	P	7.7907333	P	0.646060868647784	0	lncRNA	39156-1_{1..2736}	n381068|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001azl.3||2.4915700|-0.1379533	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381068|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001azl.3||2.4915700|-0.1379533	chr1	 16972863	 16975598	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007494	0.9222268	A	0.91930115	A	1.00202996364091	0	lncRNA	BC042465	NA	BC042465	NA	Hs.569096	XLOC_010123	NA	NA	THC2621465	NA	"BROAD Institute lincRNA (XLOC_010123), lincRNA [TCONS_00020213]"	chr12:70107510-70107451	hs|12q15	Agilent_HUMAN_G3V2	BC042465	BC042465	chr12	 70107451	 70107510	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12641_PI429285431	0.91131586	A	0.90124834	A	1.00700267798593	0	lncRNA	14258-1_{1..342}	lnc-SMOC2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMOC2-5:1	chr6	169367408	169367749	+	lnc-SMOC2-5	lnc-SMOC2-5:1	XLOC_005549	linc-C6orf120-6	NA	NA	NA	inter
CUST_12563_PI429285431	4.608321	P	4.9313316	P	0.799399956851537	0	lncRNA	14173-1_{1..3000}	lnc-RP11-150O12.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-150O12.1.1-1:1	chr8	 37189285	 37192284	-	lnc-RP11-150O12.1.1-1	lnc-RP11-150O12.1.1-1:1	XLOC_007052	linc-DUSP26-4	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00"	NA	inter
CUST_27561_PI429285431	0.9117615	A	0.9104829	A	1.00088665082772	0	lncRNA	29140-1_{1..768}	n324751|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316503|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316503|-0.9241300|-0.2593340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324751|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316503|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316503|-0.9241300|-0.2593340	chr22	 17365786	 17366553	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20244_PI429285431	3.3781185	P	3.9241157	P	0.684917819278288	0	lncRNA	21887-1_{1..976}	lnc-SHANK2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHANK2-5:1	chr11	 70053165	 70054140	-	lnc-SHANK2-5	lnc-SHANK2-5:1	ENSG00000254721.1	RP11-805J14.5	FADD	"hg19_refFlat_FADD:range=chr11:70049566-700525795'pad=0,hg19_refFlat_FADD:range=chr11:70049566-700525795'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.60chr11:70049269-70053508"	NA	inner
LNCA_21_P0005436	1.3219073	A	0.91606724	A	1.32486013231232	0	lncRNA	TCONS_00013607	NA	NA	NA	NA	XLOC_006270	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006270), lincRNA [TCONS_00013607]"	chr7:135864606-135864665	hs|7q33	Agilent_HUMAN_G3V2	TCONS_00013607	TCONS_00013607	chr7	135864606	135864665	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41720_PI429285431	7.148254	P	7.442805	P	0.815326041205627	0	lncRNA	43239-1_{1..100}	ENST00000583214 ncrna:miRNA chromosome:GRCh37:1:33797994:33798093:-1 gene:ENSG00000266239 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583214 ncrna:miRNA chromosome:GRCh37:1:33797994:33798093:-1 gene:ENSG00000266239 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 33797994	 33798093	-	ENSG00000266239	ENST00000583214	NA	NA	PHC2	NA	chr1:33787994-33808093	inner
CUST_10020_PI429285431	0.8940035	A	0.89109945	A	1.00201496138154	0	lncRNA	11545-1_{1..483}	lnc-CTAGE5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTAGE5-1:1	chr14	 39939522	 39940004	+	lnc-CTAGE5-1	lnc-CTAGE5-1:1	XLOC_010811	linc-LRFN5-3	NA	NA	NA	inter
CUST_42579_PI429285431	0.9121041	A	1.5921153	A	0.624160428919532	0	lncRNA	45417-1_{1..81}	ENST00000516418 ncrna:snoRNA chromosome:GRCh37:20:46764686:46764766:-1 gene:ENSG00000252227 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516418 ncrna:snoRNA chromosome:GRCh37:20:46764686:46764766:-1 gene:ENSG00000252227 gene_biotype:snoRNA transcript_biotype:snoRNA	chr20	 46764686	 46764766	-	ENSG00000252227	ENST00000516418	NA	NA	NA	NA	NA	inter
CUST_19122_PI429285431	11.608656	P	12.232965	P	0.648730421898725	0	lncRNA	20802-2_{3001..4498}	lnc-SNURF-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SNURF-4:1	NA	     3000	     4497	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3873_PI429285431	0.94522303	A	1.2383802	A	0.816114132249001	0	lncRNA	3842-1_{1..477}	"transcript_id ""ENST00000530837.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530837.1"" | genecode_v17"	chr11	 22134994	 22135470	+	ENSG00000254820.1	ENST00000530837.1	CTD-2019O4.1	CTD-2019O4.1-001	NA	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-57.40"	NA	inter
CUST_23082_PI429285431	4.639233	P	5.0944967	P	0.729376842312425	0	lncRNA	24654-1_{1..805}	lnc-C17orf89-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf89-2:1	chr17	 79173347	 79174151	+	lnc-C17orf89-2	lnc-C17orf89-2:1	ENSG00000262115.1	RP11-455O6.2	AZI1	"hg19_refFlat_AZI1:range=chr17:79163569-791938565'pad=0,hg19_refFlat_AZI1:range=chr17:79163569-791938565'pad=0 3'pad=0 strand=- repeatMasking=none,-99.90chr17:79163393-79184088"	NA	inner
CUST_10716_PI429285431	0.90679175	A	0.8969769	A	1.00682632949939	0	lncRNA	12252-1_{1..609}	lnc-SPRY2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPRY2-4:2	chr13	 81800723	 81801331	-	lnc-SPRY2-4	lnc-SPRY2-4:2	XLOC_010672	linc-SPRY2-2	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40"	NA	inter
CUST_42327_PI429285431	10.674392	P	10.304533	P	1.29222653031786	0	lncRNA	44972-1_{1..84}	ENST00000384512 ncrna:snoRNA chromosome:GRCh37:1:76253574:76253657:1 gene:ENSG00000207241 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384512 ncrna:snoRNA chromosome:GRCh37:1:76253574:76253657:1 gene:ENSG00000207241 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 76253574	 76253657	+	ENSG00000207241	ENST00000384512	NA	NA	MSH4	NA	chr1:76262630-76263657	inter
CUST_13549_PI429285431	8.595716	P	7.8444653	P	1.68325144112425	0	lncRNA	15189-1_{1..457}	lnc-FOXL1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXL1-2:3	chr16	 86729779	 86730235	+	lnc-FOXL1-2	lnc-FOXL1-2:3	XLOC_011815	linc-MAP1LC3B-6	NA	NA	NA	inter
CUST_1291_PI429285431	0.91130644	A	0.9172221	A	0.995907972205824	0	lncRNA	1281-1_{1..467}	"transcript_id ""ENST00000425894.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425894.1"" | genecode_v17"	chr3	  6004529	  6004995	+	ENSG00000229642.1	ENST00000425894.1	AC027119.1	AC027119.1-001	NA	NA	NA	inter
CUST_44165_PI429285431	9.193939	P	9.149781	P	1.03108123379753	0	lncRNA	48824-2_{3001..3075}	"gi|354459374|ref|NR_036627.2| Homo sapiens RNA binding motif protein 5 (RBM5), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|354459374|ref|NR_036627.2| Homo sapiens RNA binding motif protein 5 (RBM5), transcript variant 2, non-coding RNA"	Chr3	 50129341	 50129415	+	10181	NR_036627.2	NA	NA	NA	NA	NA	inter
CUST_21549_PI429285431	6.4603252	P	6.686598	P	0.85484052034361	0	lncRNA	23166-1_{1..3000}	lnc-METTL14-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-METTL14-3:1	chr4	119555847	119558846	+	lnc-METTL14-3	lnc-METTL14-3:1	ENSG00000260404.1	RP11-384K6.6	METTL14	NA	chr4:119557825-119566134	inter
LNCA_21_P0006704	1.6470983	A	2.3365479	A	0.620090374416269	0	lncRNA	ENST00000416249	NA	NA	NA	NA	XLOC_008612	NA	ENST00000416249	NA	NA	"BROAD Institute lincRNA (XLOC_008612), lincRNA [TCONS_00017869]"	chr10:112631136-112631195	hs|10q25.2	Agilent_HUMAN_G3V2	ENST00000416249	ENST00000416249	chr10	112631136	112631195	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25688_PI429285431	1.5680054	A	0.95955276	A	1.52462309992049	0	lncRNA	27217-1_{1..441}	lnc-C16orf58-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf58-5:1	chr16	 31723066	 31723506	-	lnc-C16orf58-5	lnc-C16orf58-5:1	ENSG00000261731.2	CTD-2358C21.4	ZNF720	NA	chr16:31724550-31733305	inter
CUST_2446_PI429285431	0.9098323	A	0.9082805	A	1.00107620448769	0	lncRNA	2438-1_{1..553}	"transcript_id ""ENST00000512245.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512245.1"" | genecode_v17"	chr5	176153943	176154495	-	ENSG00000251446.1	ENST00000512245.1	RP11-375B1.2	RP11-375B1.2-001	NA	NA	NA	inter
CUST_37270_PI429285431	4.1519394	P	4.7548456	P	0.658426268674031	0	lncRNA	38378-1_{1..668}	n345709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1258|NULL|-1.3230100|-0.2355510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1258|NULL|-1.3230100|-0.2355510	chr12	 52499331	 52499998	-	NA	NA	NA	NA	NA	"hg19_refFlat_OR7A5:range=chr19:14938094-149390535'pad=0,hg19_refFlat_OR7A5:range=chr19:14938094-149390535'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_OR7A17:range=chr19:14991238-149921675'pad=0,hg19_refFlat_OR7A17:range=chr19:14991238-149921675'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_OR1E1:range=chr17:3300760-33017045'pad=0,hg19_refFlat_OR1E1:range=chr17:3300760-33017045'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_OR7C2:range=chr19:15052301-150532605'pad=0,hg19_refFlat_OR7C2:range=chr19:15052301-150532605'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_OR1J2:range=chr9:125273081-1252740225'pad=0,hg19_refFlat_OR1J2:range=chr9:125273081-1252740225'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30"	NA	inter
LNCA_21_P0007766	2.4469066	A	3.7991228	P	0.39168989104788	0	lncRNA	TCONS_00020936	NA	NA	NA	NA	XLOC_010207	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010207), lincRNA [TCONS_00020936]"	chr12:115741640-115741581	hs|12q24.21	Agilent_HUMAN_G3V2	TCONS_00020936	TCONS_00020936	chr12	115741581	115741640	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39434_PI429285431	0.89961	A	0.88965356	A	1.00692514701218	0	lncRNA	40383-1_{1..3000}	n386735|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tie.1||1.6019500|-0.4819346	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n386735|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tie.1||1.6019500|-0.4819346	chr13	 92000073	 92003072	+	NA	NA	NA	NA	NA	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
CUST_9880_PI429285431	2.719498	A	2.5659635	A	1.11229117079545	0	lncRNA	11403-1_{1..328}	lnc-AC007557.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC007557.1.1-2:1	chr2	217668035	217668362	+	lnc-AC007557.1.1-2	lnc-AC007557.1.1-2:1	XLOC_001861	linc-RUFY4-5	NA	NA	NA	inter
CUST_47717_PI429285431	1.1236202	A	2.0491133	A	0.526500534142641	0	lncRNA	51678-3_{6001..6631}	"gi|385137104|ref|NR_047642.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 72, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137104|ref|NR_047642.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 72, non-coding RNA"	ChrY	 15366259	 15366889	-	7404	NR_047642.1	NA	NA	NA	NA	NA	inter
CUST_26887_PI429285431	1.8398036	A	1.7324908	A	1.07721990985905	0	lncRNA	28404-1_{1..901}	n323962|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054572|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054572|-0.8706160|-0.2387387	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323962|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054572|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054572|-0.8706160|-0.2387387	chr9	131136005	131136905	+	NA	NA	NA	NA	URM1	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.51;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-12.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40chr9:131133598-131153015"	NA	inter
CUST_28667_PI429285431	1.0561391	A	0.89608777	A	1.11732689101198	0	lncRNA	30359-1_{1..789}	n326046|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047247|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047247|-1.1142100|-0.3533398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326046|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047247|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047247|-1.1142100|-0.3533398	chr10	 25441992	 25442780	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39278_PI429285431	5.1665053	P	4.350558	P	1.76045371859064	0	lncRNA	40250-1_{1..1098}	n386253|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fjs.2||-0.8582470|-0.1966286	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n386253|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fjs.2||-0.8582470|-0.1966286	chr2	110704940	110706037	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3902_PI429285431	0.9102549	A	0.90963656	A	1.00042869249	0	lncRNA	3871-1_{1..2280}	"transcript_id ""ENST00000561816.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561816.1"" | genecode_v17"	chr11	 30001660	 30003939	-	ENSG00000261340.1	ENST00000561816.1	RP11-215H22.1	RP11-215H22.1-001	NA	NA	NA	inter
CUST_41591_PI429285431	4.0165577	P	4.1586246	P	0.906219914474194	0	lncRNA	42924-1_{1..87}	ENST00000579753 ncrna:miRNA chromosome:GRCh37:12:128778637:128778723:1 gene:ENSG00000265635 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579753 ncrna:miRNA chromosome:GRCh37:12:128778637:128778723:1 gene:ENSG00000265635 gene_biotype:miRNA transcript_biotype:miRNA	chr12	128778637	128778723	+	ENSG00000265635	ENST00000579753	NA	NA	TMEM132C	NA	chr12:128768637-128788723	inner
LNCA_21_P0008539	1.6725143	A	1.9205879	A	0.842019996329998	0	lncRNA	TCONS_00023122	NA	NA	NA	NA	XLOC_011056	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011056), lincRNA [TCONS_00023122]"	chr14:66912849-66912790	hs|14q23.3	Agilent_HUMAN_G3V2	TCONS_00023122	TCONS_00023122	chr14	 66912790	 66912849	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007356	0.90623796	A	0.9011307	A	1.00354635636346	0	lncRNA	TCONS_00019645	NA	NA	NA	NA	XLOC_009451	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009451), lincRNA [TCONS_00019645]"	chr11:61740279-61740220	hs|11q12.3	Agilent_HUMAN_G3V2	TCONS_00019645	TCONS_00019645	chr11	 61740220	 61740279	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42093_PI429285431	0.8859026	A	0.8854189	A	1.00033533150228	0	lncRNA	44032-1_{1..91}	ENST00000408703 ncrna:miRNA chromosome:GRCh37:15:89151338:89151428:1 gene:ENSG00000221630 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408703 ncrna:miRNA chromosome:GRCh37:15:89151338:89151428:1 gene:ENSG00000221630 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 89151338	 89151428	+	ENSG00000221630	ENST00000408703	NA	NA	NA	NA	NA	inter
CUST_37386_PI429285431	1.060429	A	0.907516	A	1.11181210899519	0	lncRNA	38490-1_{1..1086}	n345837|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1386|NULL|-1.4896900|-0.2016896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n345837|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1386|NULL|-1.4896900|-0.2016896	chr10	134824209	134825294	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23122_PI429285431	0.8989612	A	1.4547204	A	0.680298965319504	0	lncRNA	24693-1_{1..447}	lnc-AVEN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AVEN-1:1	chr15	 34156958	 34157404	-	lnc-AVEN-1	lnc-AVEN-1:1	ENSG00000259287.1	RP11-3D4.2	AVEN	NA	chr15:34158428-34167026	inner
LNCA_21_P0001826	2.5797086	A	3.3288028	P	0.594976998180576	0	lncRNA	ENST00000449986	XR_108396	XR_108396	NA	Hs.534987	XLOC_001354	NA	ENST00000449986	THC2672871	NA	"PREDICTED: Homo sapiens hypothetical LOC100506457 (LOC100506457), miscRNA [XR_108396]"	chr2:12247017-12247076	hs|2p24.3	Agilent_HUMAN_G3V2	ENST00000449986	ENST00000449986	chr2	 12247017	 12247076	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30605_PI429285431	0.9097853	A	0.90072536	A	1.00629963160359	0	lncRNA	32387-1_{1..435}	n335921|X65912|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322797|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322797|2.6572900|-0.0275386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335921|X65912|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322797|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322797|2.6572900|-0.0275386	chr14	107034726	107035160	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002315	2.2813995	A	2.770614	A	0.712412877603112	0	lncRNA	TCONS_00003936	NA	NA	NA	NA	XLOC_001749	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001749), lincRNA [TCONS_00003936]"	chr2:171829672-171829731	hs|2q31.1	Agilent_HUMAN_G3V2	TCONS_00003936	TCONS_00003936	chr2	171829672	171829731	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6225_PI429285431	1.4760062	A	2.4332209	A	0.515050321987162	0	lncRNA	6151-1_{1..735}	"transcript_id ""ENST00000587754.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587754.1"" | genecode_v17"	chr18	 59252979	 59253713	-	ENSG00000267279.1	ENST00000587754.1	RP11-879F14.2	RP11-879F14.2-002	NA	NA	NA	inter
CUST_51502_PI429285431	3.2550535	P	3.1394367	A	1.08343815228175	0	lncRNA	55078-1_{1..1475}	hg19_lincRNAsTranscripts_TCONS_l2_00010285 range=chr16:75535618-75550207 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010285 range=chr16:75535618-75550207 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 75535618	 75537092	-	NA	NA	NA	NA	CHST6	NA	chr16:75525618-75528926	inter
CUST_14275_PI429285431	0.9017313	A	0.9011991	A	1.00036896097886	0	lncRNA	15933-1_{1..207}	lnc-DYNC1I1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DYNC1I1-3:1	chr7	 96051526	 96051732	+	lnc-DYNC1I1-3	lnc-DYNC1I1-3:1	XLOC_006182	linc-DLX6-1	NA	NA	NA	inter
CUST_43863_PI429285431	2.7627645	A	2.1767533	A	1.50109075080954	0	lncRNA	48584-1_{1..1255}	"gi|393290857|ref|NR_002185.3| Homo sapiens olfactory receptor, family 7, subfamily E, member 91 pseudogene (OR7E91P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|393290857|ref|NR_002185.3| Homo sapiens olfactory receptor, family 7, subfamily E, member 91 pseudogene (OR7E91P), non-coding RNA"	NW_004504299.1	   590356	   591610	+	79315	NR_002185.3	NA	NA	NA	NA	NA	Unknown
CUST_10063_PI429285431	0.9074712	A	0.9169251	A	0.993468479586409	0	lncRNA	11588-1_{1..3000}	lnc-KHDRBS3-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KHDRBS3-5:5	chr8	135777007	135780006	+	lnc-KHDRBS3-5	lnc-KHDRBS3-5:5	XLOC_006934	linc-KHDRBS3-4	NA	"hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0,hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0 3'pad=0 strand=- repeatMasking=none,-60.30;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20"	NA	inter
CUST_46094_PI429285431	0.9040465	A	1.0016102	A	0.934609948996887	0	lncRNA	50360-1_{1..958}	"gi|310122932|ref|XR_110374.1| PREDICTED: Homo sapiens uncharacterized LOC100507195 (LOC100507195), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310122932|ref|XR_110374.1| PREDICTED: Homo sapiens uncharacterized LOC100507195 (LOC100507195), misc_RNA"	Chr12	 68726668	 68727625	-	100507195	XR_110374.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0005561	0.91552246	A	0.904932	A	1.00736775682581	0	lncRNA	TCONS_00014134	NA	NA	NA	NA	XLOC_006101	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006101), lincRNA [TCONS_00014134]"	chr7:52842474-52842533	hs|7p12.1	Agilent_HUMAN_G3V2	TCONS_00014134	TCONS_00014134	chr7	 52842474	 52842533	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25567_PI429285431	4.653851	P	4.905861	P	0.839725672389146	0	lncRNA	27096-1_{1..409}	lnc-CT62-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CT62-1:1	chr15	 71481155	 71481563	-	lnc-CT62-1	lnc-CT62-1:1	ENSG00000259964.1	RP11-673C5.2	THSD4	NA	chr15:71471155-71491381	inner
CUST_2524_PI429285431	13.616793	P	14.599641	P	0.505979906924254	0	lncRNA	2512-1_{1..539}	"transcript_id ""ENST00000444731.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444731.1"" | genecode_v17"	chr6	 40239305	 40239843	-	ENSG00000227131.1	ENST00000444731.1	RP11-552E20.1	RP11-552E20.1-001	NA	NA	NA	inter
CUST_37524_PI429285431	0.91638255	A	0.9201516	A	0.997390903244037	0	lncRNA	38627-1_{1..472}	n345997|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1546|NULL|-1.2764600|-0.3590228	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345997|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1546|NULL|-1.2764600|-0.3590228	chr1	213072868	213073339	-	NA	NA	NA	NA	FLVCR1	NA	chr1:213062868-213072705	inter
LNCA_21_P0008683	2.057248	A	1.5665407	A	1.40513359190948	0	lncRNA	TCONS_00023530	NA	NA	NA	NA	XLOC_011368	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011368), lincRNA [TCONS_00023530]"	chr15:95869813-95902738	hs|15q26.2	Agilent_HUMAN_G3V2	TCONS_00023530	TCONS_00023530	chr15	 95869813	 95902738	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49668_PI429285431	2.7111037	A	2.6176558	A	1.06691696512406	0	lncRNA	53448-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00027515 range=chr7:149244245-149321881 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027515 range=chr7:149244245-149321881 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	149244245	149247244	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007358	0.92062867	A	0.9094461	A	1.00778128492723	0	lncRNA	TCONS_00019651	NA	NA	NA	NA	XLOC_009456	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009456), lincRNA [TCONS_00019651]"	chr11:62168852-62168793	hs|11q12.3	Agilent_HUMAN_G3V2	TCONS_00019651	TCONS_00019651	chr11	 62168793	 62168852	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2753_PI429285431	1.1806151	A	1.5609202	A	0.768275099255787	0	lncRNA	2737-1_{1..3000}	"transcript_id ""ENST00000444210.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444210.2"" | genecode_v17"	chr7	  5515435	  5518434	+	ENSG00000230733.2	ENST00000444210.2	AC092171.4	AC092171.4-001	FBXL18	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00chr7:5515428-5529442"	NA	inner
LNCA_21_P0014579	0.92271125	A	0.91132677	A	1.00792233716146	0	lncRNA	XR_110373	XR_110373	XR_110373	NA	NA	LOC100507175	uncharacterized LOC100507175	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507175 (LOC100507175), miscRNA [XR_110373]"	chr12:67961390-67961449	hs|12q15	Agilent_HUMAN_G3V2	XR_110373	XR_110373	chr12	 67961390	 67961449	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15220_PI429285431	2.6312265	A	3.4823	P	0.554372077866036	0	lncRNA	16890-1_{1..1173}	lnc-MEAF6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MEAF6-1:2	chr1	 37939745	 37940917	-	lnc-MEAF6-1	lnc-MEAF6-1:2	XLOC_000787	linc-GRIK3-2	ZC3H12A	NA	chr1:37940119-37949918	inter
CUST_7967_PI429285431	2.5025659	A	1.100921	A	2.64202643197127	0	lncRNA	9579-1_{1..988}	lnc-XRN2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-XRN2-2:4	chr20	 21142512	 21143499	+	lnc-XRN2-2	lnc-XRN2-2:4	ENSG00000088970	PLK1S1	PLK1S1	NA	chr20:21132512-21153148	inner
CUST_11979_PI429285431	0.9061875	A	0.9010264	A	1.00358380845312	0	lncRNA	13559-1_{1..223}	lnc-GAP43-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GAP43-5:1	chr3	116286937	116287159	+	lnc-GAP43-5	lnc-GAP43-5:1	XLOC_002767	linc-C3orf30-9	NA	NA	NA	inter
CUST_37918_PI429285431	1.2839689	A	1.6883477	A	0.755561554732753	0	lncRNA	39007-1_{1..337}	n346459|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2009|NULL|-1.4049400|-0.1519918	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346459|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2009|NULL|-1.4049400|-0.1519918	chr7	 66358897	 66359233	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29080_PI429285431	1.2044312	A	1.6168123	A	0.751382228894633	0	lncRNA	30811-1_{1..432}	n326573|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025916|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025916|-1.2683800|-0.3737963	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326573|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025916|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025916|-1.2683800|-0.3737963	chr1	 70954203	 70954634	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10325_PI429285431	0.8977771	A	1.0751414	A	0.884317105112646	0	lncRNA	11853-1_{1..1181}	lnc-ONECUT1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ONECUT1-1:4	chr15	 53096691	 53097871	-	lnc-ONECUT1-1	lnc-ONECUT1-1:4	XLOC_011481	linc-ONECUT1	NA	NA	NA	inter
CUST_24178_PI429285431	0.9099324	A	0.9009168	A	1.00626870431907	0	lncRNA	25729-1_{1..533}	lnc-MAT2B-3:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAT2B-3:12	chr5	163895571	163896103	+	lnc-MAT2B-3	lnc-MAT2B-3:12	ENSG00000241956.5	CTC-340A15.2	NA	NA	NA	inter
CUST_19041_PI429285431	3.249134	P	3.2778838	P	0.980269404238876	0	lncRNA	20731-1_{1..604}	lnc-GTF2F2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2F2-2:4	chr13	 45951196	 45951799	+	lnc-GTF2F2-2	lnc-GTF2F2-2:4	ENSG00000170919	XXyac-R12DG2.2	NA	NA	NA	inter
CUST_39725_PI429285431	2.916884	A	0.9005987	A	4.04540824357324	0	lncRNA	40655-1_{1..2472}	n405666|NR_002834|lncRNA|Homosapiens||RefGeneNoncode|NR_002834||2.2970800|-0.1799814	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405666|NR_002834|lncRNA|Homosapiens||RefGeneNoncode|NR_002834||2.2970800|-0.1799814	chr1	228780656	228783127	+	NA	NA	NA	NA	RHOU	NA	chr1:228780394-228798159	inter
CUST_9401_PI429285431	0.9206488	A	0.9083208	A	1.00858173218181	0	lncRNA	10904-1_{1..456}	lnc-APOC3-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APOC3-6:1	chr11	115799965	115800420	+	lnc-APOC3-6	lnc-APOC3-6:1	XLOC_009284	linc-APOC3-3	NA	NA	NA	inter
CUST_26428_PI429285431	0.9221128	A	0.9091799	A	1.00900470376716	0	lncRNA	27935-1_{1..454}	lnc-AC018816.3.1-8:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC018816.3.1-8:7	chr3	  6706516	  6706969	-	lnc-AC018816.3.1-8	lnc-AC018816.3.1-8:7	ENSG00000226258.2	GRM7-AS3	NA	NA	NA	inter
CUST_4890_PI429285431	2.9426541	P	3.0718265	P	0.914355818754778	0	lncRNA	4832-1_{1..589}	"transcript_id ""ENST00000556370.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556370.1"" | genecode_v17"	chr14	 74940710	 74941298	-	ENSG00000259005.1	ENST00000556370.1	RP3-449M8.6	RP3-449M8.6-001	ISCA2	NA	chr14:74949550-74951567	inter
CUST_29769_PI429285431	7.640535	P	6.5868025	P	2.07589359970453	0	lncRNA	31532-1_{1..619}	n333463|BC022799|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090658|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090658|0.6069920|-0.1880057	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333463|BC022799|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090658|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090658|0.6069920|-0.1880057	chr5	 80597476	 80598094	+	NA	NA	NA	NA	ZCCHC9	NA	chr5:80597402-80608966	inter
CUST_1180_PI429285431	0.906004	A	0.9022891	A	1.00257829055003	0	lncRNA	1170-1_{1..391}	"transcript_id ""ENST00000414750.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414750.1"" | genecode_v17"	chr2	181966659	181967049	+	ENSG00000234663.1	ENST00000414750.1	AC104820.2	AC104820.2-003	NA	NA	NA	inter
CUST_41380_PI429285431	7.1132126	P	6.726452	P	1.30745437229494	0	lncRNA	42476-1_{1..103}	ENST00000578054 ncrna:miRNA chromosome:GRCh37:18:64748821:64748923:1 gene:ENSG00000263354 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578054 ncrna:miRNA chromosome:GRCh37:18:64748821:64748923:1 gene:ENSG00000263354 gene_biotype:miRNA transcript_biotype:miRNA	chr18	 64748821	 64748923	+	ENSG00000263354	ENST00000578054	NA	NA	NA	NA	NA	inter
CUST_19740_PI429285431	0.9106123	A	0.9113633	A	0.999479581931883	0	lncRNA	21398-1_{1..472}	lnc-CTIF-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTIF-3:1	chr18	 46734849	 46735320	+	lnc-CTIF-3	lnc-CTIF-3:1	ENSG00000266696.1	RP11-30L3.2	DYM	NA	chr18:46724849-46745151	inner
CUST_28882_PI429285431	2.2181885	A	0.9062776	A	2.48270164811894	0	lncRNA	30597-1_{1..858}	n326304|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086238|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086238|-1.1707900|-0.3929325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326304|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086238|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086238|-1.1707900|-0.3929325	chr1	185328596	185329453	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2467_PI429285431	1.3750668	A	0.9148976	A	1.37570315183647	0	lncRNA	2459-1_{1..789}	"transcript_id ""ENST00000443445.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443445.1"" | genecode_v17"	chr6	  3594481	  3595269	-	ENSG00000228793.1	ENST00000443445.1	RP1-223B1.1	RP1-223B1.1-001	NA	NA	NA	inter
CUST_48180_PI429285431	0.920185	A	0.92901444	A	0.993898588231902	0	lncRNA	52044-1_{1..849}	"gi|310113925|ref|XR_112192.1| PREDICTED: Homo sapiens uncharacterized LOC100134423, transcript variant 1 (LOC100134423), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310113925|ref|XR_112192.1| PREDICTED: Homo sapiens uncharacterized LOC100134423, transcript variant 1 (LOC100134423), misc_RNA"	NA	NA	NA	NA	NA	XR_112192.1	NA	NA	NA	NA	NA	Unknown
CUST_23933_PI429285431	4.542778	P	4.799738	P	0.836849444755069	0	lncRNA	25490-1_{1..795}	lnc-MED9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MED9-1:1	chr17	 17411095	 17411889	+	lnc-MED9-1	lnc-MED9-1:1	ENSG00000265511.1	RP11-524F11.1	PEMT	NA	chr17:17408877-17421622	inner
CUST_37064_PI429285431	2.2112086	A	0.9837125	A	2.34160235206296	0	lncRNA	38196-1_{1..1889}	n345513|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1062|NULL|-1.5381200|-0.2627518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345513|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1062|NULL|-1.5381200|-0.2627518	chr2	 20076650	 20078538	-	NA	NA	NA	NA	TTC32	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0,hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80chr2:20096514-20097312"	NA	inter
CUST_13933_PI429285431	1.3455534	A	1.1546068	A	1.14151245433497	0	lncRNA	15580-1_{1..288}	lnc-ASCL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASCL1-2:1	chr12	103345190	103345477	+	lnc-ASCL1-2	lnc-ASCL1-2:1	XLOC_009856	linc-ASCL1-2	ASCL1	NA	chr12:103351452-103354294	inter
CUST_40285_PI429285431	1.5258539	A	1.280076	A	1.18573194431123	0	lncRNA	41091-1_{1..3000}	n408234|NR_028397|lncRNA|Homosapiens||RefGeneNoncode|NR_028397||9.8471300|-0.2297926	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408234|NR_028397|lncRNA|Homosapiens||RefGeneNoncode|NR_028397||9.8471300|-0.2297926	chr1	231664398	231667397	+	NA	NA	NA	NA	DISC1	NA	chr1:231762561-231964990	inter
LNCA_21_P0001764	0.9229508	A	0.9227056	A	1.00016997413264	0	lncRNA	ENST00000451123	NA	XM_001717074	NA	Hs.298987	LOC100130097	kinesin-like protein family member 6-like	ENST00000451123	NA	NA	"BROAD Institute lincRNA (XLOC_001293), lincRNA [TCONS_00002634]"	chr1:246949388-246949329	hs|1q44	Agilent_HUMAN_G3V2	ENST00000451123	ENST00000451123	chr1	246949329	246949388	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5465_PI429285431	2.2437377	A	2.326289	A	0.944386091852048	0	lncRNA	5398-1_{1..389}	"transcript_id ""ENST00000566507.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566507.1"" | genecode_v17"	chr16	 25096913	 25097301	-	ENSG00000260448.1	ENST00000566507.1	RP11-449H11.1	RP11-449H11.1-004	LCMT1	NA	chr16:25123047-25124879	inter
CUST_26229_PI429285431	0.92099404	A	0.9271428	A	0.995747073756378	0	lncRNA	27736-1_{1..799}	lnc-AC009365.3.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC009365.3.1-3:1	chr7	132533856	132534654	+	lnc-AC009365.3.1-3	lnc-AC009365.3.1-3:1	ENSG00000227197.1	AC009518.8	CHCHD3	NA	chr7:132523856-132544353	inner
CUST_48708_PI429285431	0.9128508	A	0.9136844	A	0.999422359408886	0	lncRNA	52550-1_{1..698}	hg19_lincRNAsTranscripts_TCONS_l2_00014853 range=chr2:118940509-118955411 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014853 range=chr2:118940509-118955411 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	118940509	118941206	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4176_PI429285431	3.1306634	P	3.5962222	A	0.724190521765539	0	lncRNA	4134-1_{1..1003}	"transcript_id ""ENST00000540399.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000540399.1"" | genecode_v17"	chr12	 17662287	 17663289	-	ENSG00000256994.1	ENST00000540399.1	RP11-871F6.3	RP11-871F6.3-001	NA	NA	NA	inter
CUST_40377_PI429285431	1.0790778	A	0.91182125	A	1.12292108990659	0	lncRNA	41173-1_{1..3000}	n409180|NR_033341|lncRNA|Homosapiens||RefGeneNoncode|NR_033341||1.2828100|-0.2550817	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409180|NR_033341|lncRNA|Homosapiens||RefGeneNoncode|NR_033341||1.2828100|-0.2550817	chr19	 44609491	 44612490	-	NA	NA	NA	NA	ZNF225	"hg19_refFlat_ZNF221:range=chr19:44466879-444715085'pad=0,hg19_refFlat_ZNF221:range=chr19:44466879-444715085'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF224:range=chr19:44602027-446124375'pad=0,hg19_refFlat_ZNF224:range=chr19:44602027-446124375'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90chr19:44617548-44627336"	NA	inter
CUST_28877_PI429285431	1.1010587	A	1.0630523	A	1.02669410027067	0	lncRNA	30591-1_{1..784}	n326298|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086291|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086291|-0.2508380|-0.1811720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326298|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086291|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086291|-0.2508380|-0.1811720	chr1	187141441	187142224	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31266_PI429285431	6.786615	P	6.1453853	P	1.55965798781699	0	lncRNA	33056-1_{1..1050}	n337723|BC038184|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|105|NULL|5.1685000|-0.1462541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337723|BC038184|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|105|NULL|5.1685000|-0.1462541	chrX	 53659449	 53660498	-	NA	NA	NA	NA	HUWE1	NA	chrX:53649449-53713673	inner
CUST_19255_PI429285431	1.1768028	A	0.9520789	A	1.1685535917853	0	lncRNA	20924-1_{1..233}	lnc-GLRA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLRA3-1:1	chr4	175900489	175900721	-	lnc-GLRA3-1	lnc-GLRA3-1:1	ENSG00000250431.1	RP13-577H12.2	ADAM29	"hg19_refFlat_ADAM29:range=chr4:175896677-1758991395'pad=0,hg19_refFlat_ADAM29:range=chr4:175896677-1758991395'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40chr4:175890489-175899331"	NA	inter
CUST_46874_PI429285431	3.7687035	P	4.7353315	P	0.511700660257575	0	lncRNA	51002-3_{6001..7903}	"gi|373838808|ref|NR_046055.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 31, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373838808|ref|NR_046055.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 31, non-coding RNA"	Chr17	 48644429	 48646331	+	8913	NR_046055.1	NA	NA	NA	NA	NA	inter
CUST_36373_PI429285431	9.099876	P	8.755185	P	1.26987896758437	0	lncRNA	37592-2_{3001..3978}	n344890|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_439|NULL|-1.4115000|-0.2532283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344890|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_439|NULL|-1.4115000|-0.2532283	chr6	 25006671	 25007648	+	NA	NA	NA	NA	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ASS1:range=chr9:133327616-1333764085'pad=0,hg19_refFlat_ASS1:range=chr9:133327616-1333764085'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60"	NA	inter
CUST_44204_PI429285431	0.9099544	A	0.91520786	A	0.996365200946031	0	lncRNA	48858-1_{1..2788}	"gi|212276136|ref|NR_024407.1| Homo sapiens uncharacterized LOC100009676 (LOC100009676), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|212276136|ref|NR_024407.1| Homo sapiens uncharacterized LOC100009676 (LOC100009676), non-coding RNA"	Chr3	101395274	101398061	+	100009676	NR_024407.1	NA	NA	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.14;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZBTB11:range=chr3:101370010-1013957585'pad=0,hg19_refFlat_ZBTB11:range=chr3:101370010-1013957585'pad=0 3'pad=0 strand=- repeatMasking=none,-102.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.90"	NA	inter
LNCA_21_P0014202	0.9195381	A	0.9140605	A	1.00380399990759	0	lncRNA	ENST00000429067	XR_108815	XR_108815	NA	Hs.660830	LOC100506881	NA	ENST00000429067	THC2502047	NA	"PREDICTED: Homo sapiens hypothetical LOC100506881, transcript variant 1 (LOC100506881), miscRNA [XR_108815]"	chr7:130995157-130995098	hs|7q32.3	Agilent_HUMAN_G3V2	ENST00000429067	ENST00000429067	chr7	130995098	130995157	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51918_PI429285431	0.9281575	A	0.93040097	A	0.998446153566214	0	lncRNA	55460-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00016674 range=chr20:54129021-54201563 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016674 range=chr20:54129021-54201563 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	 54129021	 54132020	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00"	NA	inter
CUST_6312_PI429285431	0.9093343	A	0.90527153	A	1.00282006649828	0	lncRNA	6236-1_{1..865}	"transcript_id ""ENST00000588758.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588758.1"" | genecode_v17"	chr19	  4769293	  4770157	+	ENSG00000176840.7	ENST00000588758.1	MIR7-3HG	MIR7-3HG-005	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
CUST_14291_PI429285431	1.4971626	A	1.6504457	A	0.899201844486092	0	lncRNA	15950-1_{1..461}	lnc-SLCO4A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SLCO4A1-1:1	chr20	 61266850	 61267310	+	lnc-SLCO4A1-1	lnc-SLCO4A1-1:1	XLOC_013603	linc-SLCO4A1-1	SLCO4A1	NA	chr20:61273797-61277214	inter
CUST_23465_PI429285431	4.6612525	P	5.094	P	0.740849550902814	0	lncRNA	25032-1_{1..722}	lnc-SEC22C-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC22C-2:2	chr3	 42695486	 42696207	-	lnc-SEC22C-2	lnc-SEC22C-2:2	ENSG00000230084.1	RP4-613B23.1	ZBTB47	"hg19_refFlat_NKTR:range=chr3:42642499-426874675'pad=0,hg19_refFlat_NKTR:range=chr3:42642499-426874675'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60chr3:42695176-42705880"	NA	inner
LNCA_21_P0004480	5.9154625	P	6.2555866	P	0.789973355776132	0	lncRNA	TCONS_00010589	NA	NA	NA	NA	XLOC_005115	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005115), lincRNA [TCONS_00010589]"	chr5:180634673-180634614	hs|5q35.3	Agilent_HUMAN_G3V2	TCONS_00010589	TCONS_00010589	chr5	180634614	180634673	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21506_PI429285431	2.020214	A	1.6623595	A	1.28151867274913	0	lncRNA	23124-1_{1..580}	lnc-LIF-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIF-2:1	chr22	 30476117	 30476696	-	lnc-LIF-2	lnc-LIF-2:1	ENSG00000227117.2	CTA-85E5.10	HORMAD2	NA	chr22:30466117-30486469	inner
LNCA_21_P0002459	3.471501	P	3.6162105	P	0.904561501055163	0	lncRNA	TCONS_00004306	NA	NA	NA	NA	XLOC_002158	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002158), lincRNA [TCONS_00004306]"	chr2:73090729-73090670	hs|2p13.2	Agilent_HUMAN_G3V2	TCONS_00004306	TCONS_00004306	chr2	 73090670	 73090729	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7511_PI429285431	0.8962119	A	0.89769703	A	0.998971115992226	0	lncRNA	9151-1_{1..434}	lnc-CRYGS-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYGS-1:6	chr3	186175130	186175563	-	lnc-CRYGS-1	lnc-CRYGS-1:6	ENSG00000224406	XLOC_003358	NA	NA	NA	inter
CUST_7012_PI429285431	5.0138516	P	5.21604	P	0.869231040727494	0	lncRNA	6959-1_{1..382}	"transcript_id ""ENST00000432272.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432272.1"" | genecode_v17"	chrX	  1853010	  1853391	+	ENSG00000223511.1	ENST00000432272.1	RP13-297E16.4	RP13-297E16.4-002	NA	NA	NA	inter
CUST_52105_PI429285431	4.3241663	P	3.9697018	P	1.27851093510135	0	lncRNA	55630-1_{1..327}	hg19_lincRNAsTranscripts_TCONS_l2_00017580 range=chr22:18724069-18732234 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017580 range=chr22:18724069-18732234 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 18724069	 18724395	+	NA	NA	NA	NA	LOC642643	NA	chr22:18714069-18737841	inter
CUST_20917_PI429285431	1.2603949	A	1.5485364	A	0.818956370412791	0	lncRNA	22548-1_{1..564}	lnc-MSX2-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MSX2-4:5	chr5	173947428	173947991	+	lnc-MSX2-4	lnc-MSX2-4:5	ENSG00000249306.1	RP11-267A15.1	NA	NA	NA	inter
CUST_45717_PI429285431	5.4341807	P	4.950733	P	1.39808075974799	0	lncRNA	50084-1_{1..3000}	"gi|377823721|ref|NR_040711.2| Homo sapiens potassium voltage-gated channel, KQT-like subfamily, member 1 (KCNQ1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|377823721|ref|NR_040711.2| Homo sapiens potassium voltage-gated channel, KQT-like subfamily, member 1 (KCNQ1), transcript variant 2, non-coding RNA"	Chr11	  2482666	  2485665	+	3784	NR_040711.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0004795	0.9109155	A	0.90230143	A	1.00598867919973	0	lncRNA	ENST00000449072	NA	NA	NA	NA	XLOC_005891	NA	ENST00000449072	THC2762560	NA	"BROAD Institute lincRNA (XLOC_005891), lincRNA [TCONS_00011600]"	chr6:156814546-156814487	hs|6q25.3	Agilent_HUMAN_G3V2	ENST00000449072	ENST00000449072	chr6	156814487	156814546	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51781_PI429285431	1.209915	A	0.88831115	A	1.24971909478097	0	lncRNA	55331-1_{1..1408}	hg19_lincRNAsTranscripts_TCONS_l2_00012839 range=chr19:9375925-9381015 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012839 range=chr19:9375925-9381015 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	  9375925	  9377332	-	NA	NA	NA	NA	ZNF699	NA	chr19:9389109-9391015	inter
CUST_28918_PI429285431	1.9843767	A	0.90768397	A	2.10919536283338	0	lncRNA	30635-1_{1..389}	n326343|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097958|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097958|-1.3861400|-0.5426438	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326343|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097958|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097958|-1.3861400|-0.5426438	chr1	166637344	166637732	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5922_PI429285431	2.2214258	A	2.2315834	A	0.992984015942406	0	lncRNA	5850-1_{1..692}	"transcript_id ""ENST00000593015.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593015.1"" | genecode_v17"	chr17	 58042193	 58042884	+	ENSG00000267302.1	ENST00000593015.1	RP11-178C3.2	RP11-178C3.2-002	RNFT1	NA	chr17:58032193-58042117	inter
CUST_21114_PI429285431	4.3694777	P	4.488184	P	0.921013175521565	0	lncRNA	22739-1_{1..467}	lnc-TRAPPC6B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRAPPC6B-2:1	chr14	 39736164	 39736630	-	lnc-TRAPPC6B-2	lnc-TRAPPC6B-2:1	ENSG00000258940.1	RP11-407N17.5	CTAGE5	NA	chr14:39734476-39746265	inner
CUST_33081_PI429285431	4.9629827	P	5.0643425	P	0.932153983503574	0	lncRNA	34685-1_{1..545}	n339768|AF143886|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2215|NULL|-1.1818700|-0.2449188	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339768|AF143886|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2215|NULL|-1.1818700|-0.2449188	chr4	   744879	   745423	+	NA	NA	NA	NA	PCGF3	NA	chr4:734879-755418	inner
CUST_45960_PI429285431	4.0487795	P	4.1553044	P	0.928822676468155	0	lncRNA	50253-1_{1..882}	"gi|336595074|ref|NR_038933.1| Homo sapiens uncharacterized LOC100507424 (LOC100507424), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336595074|ref|NR_038933.1| Homo sapiens uncharacterized LOC100507424 (LOC100507424), non-coding RNA"	Chr12	  2945982	  2946863	+	100507424	NR_038933.1	NA	NA	NA	"hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0,hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30"	NA	inter
CUST_26900_PI429285431	0.89737344	A	0.89332277	A	1.00281165580054	0	lncRNA	28418-1_{1..830}	n323976|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053941|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053941|-0.8357270|-0.2102411	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323976|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053941|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053941|-0.8357270|-0.2102411	chr9	124205506	124206335	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50"	NA	inter
CUST_48984_PI429285431	7.9417214	P	8.104805	P	0.893114097477498	0	lncRNA	52820-3_{6001..7194}	hg19_lincRNAsTranscripts_TCONS_l2_00019097 range=chr3:195663403-195673039 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019097 range=chr3:195663403-195673039 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	195669403	195670596	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19155_PI429285431	5.279949	P	3.145873	P	4.38955898261924	0	lncRNA	20829-1_{1..3000}	lnc-OSBP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-OSBP2-3:1	NA	NA	     2999	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8491_PI429285431	4.157352	P	3.5032923	P	1.57359000590958	0	lncRNA	10055-1_{1..1582}	lnc-XRCC6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-XRCC6-1:1	chr22	 41995422	 41997003	+	lnc-XRCC6-1	lnc-XRCC6-1:1	ENSG00000249355	XLOC_014251	PMM1	NA	chr22:41985422-41985871	inner
CUST_17866_PI429285431	0.9072618	A	0.90755624	A	0.999795930569155	0	lncRNA	19603-1_{1..518}	lnc-FAM138A-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM138A-3:2	chr1	   146642	   147159	-	lnc-FAM138A-3	lnc-FAM138A-3:2	XLOC_000659	linc-ZNF692-5	NA	NA	NA	inter
CUST_1602_PI429285431	0.8892858	A	1.1432714	A	0.838576554499591	0	lncRNA	1588-1_{1..428}	"transcript_id ""ENST00000423643.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423643.1"" | genecode_v17"	chr3	187676563	187676990	-	ENSG00000224187.1	ENST00000423643.1	RP11-132N15.3	RP11-132N15.3-002	NA	NA	NA	inter
CUST_4195_PI429285431	1.3456069	A	0.93720365	A	1.32721606104197	0	lncRNA	4154-1_{1..559}	"transcript_id ""ENST00000429944.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429944.2"" | genecode_v17"	chr12	 24430184	 24430742	-	ENSG00000255864.1	ENST00000429944.2	RP11-444D3.1	RP11-444D3.1-003	SOX5	NA	chr12:24420184-24715380	inner
LNCA_19_P00319578	2.801431	A	2.440989	A	1.28381916234702	0	lncRNA	THC2524841	NA	NA	NA	NA	XLOC_l2_010723	NA	NA	THC2524841	NA	"BROAD Institute lincRNA (XLOC_l2_010723), lincRNA [TCONS_l2_00021618]"	chr4:079584330-079584389	hs|4q21.21	Agilent_HUMAN_G3V2	THC2524841	THC2524841	chr4	 79584330	 79584389	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45395_PI429285431	7.4846034	P	7.860599	P	0.770573458486433	0	lncRNA	49825-1_{1..802}	"gi|86476048|ref|NR_002894.1| Homo sapiens hippocampus abundant transcript-like 2 (HIATL2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|86476048|ref|NR_002894.1| Homo sapiens hippocampus abundant transcript-like 2 (HIATL2), non-coding RNA"	Chr9	 99708327	 99709128	-	84278	NR_002894.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60"	NA	inter
CUST_16399_PI429285431	0.90625006	A	1.0574099	A	0.900526202640552	0	lncRNA	18095-1_{1..827}	lnc-SERPINI1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERPINI1-7:1	chr3	166260876	166261702	+	lnc-SERPINI1-7	lnc-SERPINI1-7:1	XLOC_002903	linc-SERPINI1-2	NA	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60"	NA	inter
CUST_29884_PI429285431	5.832259	P	5.67662	P	1.11391488533025	0	lncRNA	31647-1_{1..241}	n333918|L42353|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193805|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193805|1.4733900|-0.0341275	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333918|L42353|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193805|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193805|1.4733900|-0.0341275	chr22	 19130275	 19130515	-	NA	NA	NA	NA	GSC2	NA	chr22:19136504-19137796	inner
CUST_38733_PI429285431	0.90926635	A	0.90035635	A	1.00619505182616	0	lncRNA	39727-1_{1..1415}	n384240|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003cej.1||-0.8661710|-0.3650000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384240|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003cej.1||-0.8661710|-0.3650000	chr3	 28615345	 28616759	-	NA	NA	NA	NA	LOC100652807	NA	chr3:28616925-28617911	inter
CUST_10012_PI429285431	4.2506595	P	4.5622315	P	0.805763298969317	0	lncRNA	11538-1_{1..3000}	lnc-SLC17A9-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SLC17A9-4:1	chr20	 61716286	 61719285	+	lnc-SLC17A9-4	lnc-SLC17A9-4:1	XLOC_013604	linc-BIRC7-4	NA	NA	NA	inter
CUST_3317_PI429285431	3.9978929	P	3.8548179	P	1.10425625157902	0	lncRNA	3296-1_{1..731}	"transcript_id ""ENST00000519005.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519005.1"" | genecode_v17"	chr8	132322719	132323449	+	ENSG00000253507.1	ENST00000519005.1	CTD-2501M5.1	CTD-2501M5.1-003	NA	NA	NA	inter
CUST_2512_PI429285431	0.9111061	A	1.7150211	A	0.572792695515303	0	lncRNA	2504-1_{1..3000}	"transcript_id ""ENST00000530000.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000530000.1"" | genecode_v17"	chr6	 33878879	 33881878	+	ENSG00000233183.2	ENST00000530000.1	RP3-468B3.2	RP3-468B3.2-003	NA	NA	NA	inter
CUST_4955_PI429285431	7.5363216	P	7.414613	P	1.0880226572986	0	lncRNA	4899-1_{1..446}	"transcript_id ""ENST00000554653.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554653.1"" | genecode_v17"	chr14	 93352697	 93353142	+	ENSG00000258742.1	ENST00000554653.1	RP11-862G15.1	RP11-862G15.1-002	NA	NA	NA	inter
CUST_16759_PI429285431	2.3174725	A	2.6067984	A	0.818284313012724	0	lncRNA	18467-1_{1..607}	lnc-RUFY4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RUFY4-1:2	chr2	218858109	218858715	+	lnc-RUFY4-1	lnc-RUFY4-1:2	XLOC_001865	linc-RUFY4-1	NA	NA	NA	inter
CUST_10798_PI429285431	0.90798545	A	1.0015136	A	0.937227927919892	0	lncRNA	12335-1_{1..578}	lnc-TIGD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TIGD2-1:1	chr4	 90412872	 90413449	+	lnc-TIGD2-1	lnc-TIGD2-1:1	XLOC_003608	linc-MMRN1-2	NA	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50"	NA	inter
CUST_6126_PI429285431	3.6628218	P	3.8874555	P	0.855812288679326	0	lncRNA	6052-1_{1..663}	"transcript_id ""ENST00000578129.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578129.1"" | genecode_v17"	chr18	 22635564	 22636226	+	ENSG00000265552.1	ENST00000578129.1	RP11-958F21.3	RP11-958F21.3-001	ZNF521	NA	chr18:22641888-22646724	inter
CUST_45751_PI429285431	11.342336	P	11.58643	P	0.844345871571231	0	lncRNA	50100-1_{1..2267}	"gi|381388778|ref|NR_047512.1| Homo sapiens amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) (APBB1), transcript variant 11, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|381388778|ref|NR_047512.1| Homo sapiens amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) (APBB1), transcript variant 11, non-coding RNA"	Chr11	  6416355	  6418621	-	322	NR_047512.1	NA	NA	NA	NA	NA	inter
CUST_1082_PI429285431	0.9121127	A	1.3109301	A	0.75847976639137	0	lncRNA	1071-1_{1..557}	"transcript_id ""ENST00000429008.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429008.1"" | genecode_v17"	chr2	140123735	140124291	+	ENSG00000226939.1	ENST00000429008.1	AC062021.1	AC062021.1-001	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	inter
LNCA_19_P00321597	2.256856	A	3.1437998	P	0.540758446507341	0	lncRNA	AK097943	NA	AK097943	NA	NA	XLOC_011117	NA	ENST00000556462	THC2510042	NA	"BROAD Institute lincRNA (XLOC_011117), lincRNA [TCONS_00022383]"	chr14:98399956-98399897	hs|14q32.2	Agilent_HUMAN_G3V2	AK097943	AK097943	chr14	 98399897	 98399956	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007795	0.91334087	A	0.9030164	A	1.00718204533268	0	lncRNA	TCONS_00020989	NA	NA	NA	NA	XLOC_010254	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010254), lincRNA [TCONS_00020989]"	chr12:128243684-128243625	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020989	TCONS_00020989	chr12	128243625	128243684	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23882_PI429285431	1.0993671	A	1.2110736	A	0.925492689914704	0	lncRNA	25441-1_{1..3000}	lnc-DPM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DPM1-1:1	chr20	 49624473	 49627472	-	lnc-DPM1-1	lnc-DPM1-1:1	ENSG00000248832.1	RP5-955M13.3	KCNG1	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30chr20:49620193-49634577"	NA	inner
CUST_5929_PI429285431	0.88763136	A	0.88758516	A	1.0000320239125	0	lncRNA	5858-1_{1..355}	"transcript_id ""ENST00000582741.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582741.1"" | genecode_v17"	chr17	 61532354	 61532708	+	ENSG00000265971.1	ENST00000582741.1	RP11-269G24.6	RP11-269G24.6-001	CYB561	NA	chr17:61522354-61523722	inter
LNCA_21_P0014880	2.471806	A	0.90587646	A	2.96068199527596	0	lncRNA	XR_132792	XR_132792	XR_132792	NA	NA	LOC100652751	uncharacterized LOC100652751	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652751 (LOC100652751), miscRNA [XR_132792]"	chr10:102121843-102121784	hs|10q24.31	Agilent_HUMAN_G3V2	XR_132792	XR_132792	chr10	102121784	102121843	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24537_PI429285431	0.91047245	A	0.90720624	A	1.00226652895478	0	lncRNA	26087-1_{1..647}	lnc-CNBD1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CNBD1-3:1	chr8	 89031284	 89031930	+	lnc-CNBD1-3	lnc-CNBD1-3:1	ENSG00000253171.1	CTB-118P15.2	NA	NA	NA	inter
CUST_25906_PI429285431	0.8957165	A	1.0649824	A	0.889295074382457	0	lncRNA	27425-1_{1..632}	lnc-KIAA1267-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1267-3:1	chr17	 43972846	 43973477	-	lnc-KIAA1267-3	lnc-KIAA1267-3:1	ENSG00000264589.1	RP11-105N13.2	MAPT	NA	chr17:43971748-43982966	inner
CUST_27909_PI429285431	2.5033667	A	2.51858	A	0.98951034818327	0	lncRNA	29506-1_{1..584}	n325149|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331144|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331144|-0.8521180|-0.2960316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325149|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331144|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331144|-0.8521180|-0.2960316	chr2	123540196	123540779	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12460_PI429285431	4.004547	P	4.075062	P	0.952297994786809	0	lncRNA	14072-1_{1..734}	lnc-PPARA-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPARA-2:1	chr22	 46539339	 46540072	+	lnc-PPARA-2	lnc-PPARA-2:1	XLOC_014268	linc-PPARA	PPARA	NA	chr22:46546499-46549488	inter
CUST_35497_PI429285431	1.9905181	A	1.9829085	A	1.00528850783393	0	lncRNA	36905-1_{1..1240}	n342597|BC026277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5098|NULL|-0.2827700|-0.5082432	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342597|BC026277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5098|NULL|-0.2827700|-0.5082432	chr10	 51723004	 51724243	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00"	NA	inter
CUST_27873_PI429285431	1.5529217	A	1.3446866	A	1.15527403140276	0	lncRNA	29466-1_{1..1864}	n325109|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000131003|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000131003|-1.2611900|-0.4542583	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325109|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000131003|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000131003|-1.2611900|-0.4542583	chr2	234438880	234440743	-	NA	NA	NA	NA	USP40	NA	chr2:234428880-234450744	inner
CUST_49805_PI429285431	1.3210338	A	1.6511976	A	0.795446165652233	0	lncRNA	53561-1_{1..453}	hg19_lincRNAsTranscripts_TCONS_l2_00025925 range=chr7:63361323-63385566 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025925 range=chr7:63361323-63385566 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 63361323	 63361775	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27077_PI429285431	1.0582447	A	1.0698568	A	0.991983411242014	0	lncRNA	28609-1_{1..3000}	n324186|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322914|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322914|0.0671484|-0.3329098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324186|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322914|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322914|0.0671484|-0.3329098	chr7	148726227	148729226	+	NA	NA	NA	NA	PDIA4	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10chr7:148716227-148725782"	NA	inter
CUST_26726_PI429285431	11.005034	P	10.763958	P	1.18187380544418	0	lncRNA	28221-1_{1..543}	n4540|L43845|snRNA|Homosapiens|u12snRNA|NONCODEv2.0|n4540|NULL|-1.5906100|-0.3482772	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n4540|L43845|snRNA|Homosapiens|u12snRNA|NONCODEv2.0|n4540|NULL|-1.5906100|-0.3482772	chrX	 46991712	 46992254	+	NA	NA	NA	NA	NDUFB11	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80chrX:46992071-47002256"	NA	inter
CUST_93_PI429285431	4.9666767	P	4.8746557	P	1.06586225074272	0	lncRNA	85-1_{1..141}	"transcript_id ""ENST00000454258.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000454258.1"" | genecode_v17"	chr19	 53418450	 53418590	-	ENSG00000213793.3	ENST00000454258.1	ZNF888	ZNF888-201	ZNF816-ZNF321P	"hg19_refFlat_ZNF534:range=chr19:52934728-529426995'pad=0,hg19_refFlat_ZNF534:range=chr19:52934728-529426995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF761:range=chr19:53950522-539600025'pad=0,hg19_refFlat_ZNF761:range=chr19:53950522-539600025'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF571:range=chr19:38055500-380775775'pad=0,hg19_refFlat_ZNF571:range=chr19:38055500-380775775'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF732:range=chr4:264888-2899445'pad=0,hg19_refFlat_ZNF732:range=chr4:264888-2899445'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF383:range=chr19:37721356-377345665'pad=0,hg19_refFlat_ZNF383:range=chr19:37721356-377345665'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF813:range=chr19:53987077-539953405'pad=0,hg19_refFlat_ZNF813:range=chr19:53987077-539953405'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF320:range=chr19:53383849-533935085'pad=0,hg19_refFlat_ZNF320:range=chr19:53383849-533935085'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF677:range=chr19:53740225-537548035'pad=0,hg19_refFlat_ZNF677:range=chr19:53740225-537548035'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF480:range=chr19:52803666-528261115'pad=0,hg19_refFlat_ZNF480:range=chr19:52803666-528261115'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF141:range=chr4:331773-3676515'pad=0,hg19_refFlat_ZNF141:range=chr4:331773-3676515'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_ZNF836:range=chr19:52658125-526713255'pad=0,hg19_refFlat_ZNF836:range=chr19:52658125-526713255'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF816:range=chr19:53453072-534593425'pad=0,hg19_refFlat_ZNF816:range=chr19:53453072-534593425'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF845:range=chr19:53844561-538568415'pad=0,hg19_refFlat_ZNF845:range=chr19:53844561-538568415'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF493:range=chr19:21580040-216077865'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-216077865'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF528:range=chr19:52905267-529199925'pad=0,hg19_refFlat_ZNF528:range=chr19:52905267-529199925'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF595:range=chr4:53383-873405'pad=0,hg19_refFlat_ZNF595:range=chr4:53383-873405'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF665:range=chr19:53667706-536861515'pad=0,hg19_refFlat_ZNF665:range=chr19:53667706-536861515'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF468:range=chr19:53343978-533575255'pad=0,hg19_refFlat_ZNF468:range=chr19:53343978-533575255'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF616:range=chr19:52618071-526337655'pad=0,hg19_refFlat_ZNF616:range=chr19:52618071-526337655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF766:range=chr19:52772867-527944515'pad=0,hg19_refFlat_ZNF766:range=chr19:52772867-527944515'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF610:range=chr19:52852426-528700205'pad=0,hg19_refFlat_ZNF610:range=chr19:52852426-528700205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF880:range=chr19:52873219-528885675'pad=0,hg19_refFlat_ZNF880:range=chr19:52873219-528885675'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF573:range=chr19:38229393-382643695'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382643695'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF160:range=chr19:53571330-535895295'pad=0,hg19_refFlat_ZNF160:range=chr19:53571330-535895295'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_ZNF114:range=chr19:48783057-487901355'pad=0,hg19_refFlat_ZNF114:range=chr19:48783057-487901355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_ZNF841:range=chr19:52568360-525880545'pad=0,hg19_refFlat_ZNF841:range=chr19:52568360-525880545'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF28:range=chr19:53302941-533212115'pad=0,hg19_refFlat_ZNF28:range=chr19:53302941-533212115'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF415:range=chr19:53611630-536256715'pad=0,hg19_refFlat_ZNF415:range=chr19:53611630-536256715'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_ZNF765:range=chr19:53901269-539123805'pad=0,hg19_refFlat_ZNF765:range=chr19:53901269-539123805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF816-ZNF321P:range=chr19:53432156-534593425'pad=0,hg19_refFlat_ZNF816-ZNF321P:range=chr19:53432156-534593425'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF208:range=chr19:22153993-221935965'pad=0,hg19_refFlat_ZNF208:range=chr19:22153993-221935965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF701:range=chr19:53077401-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53077401-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF718:range=chr4:53383-1559125'pad=0,hg19_refFlat_ZNF718:range=chr4:53383-1559125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_ZNF860:range=chr3:32030572-320324705'pad=0,hg19_refFlat_ZNF860:range=chr3:32030572-320324705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF347:range=chr19:53643561-536570005'pad=0,hg19_refFlat_ZNF347:range=chr19:53643561-536570005'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr19:53430388-53431126"	NA	inter
LNCA_19_P00321399	6.6423173	P	7.0294986	P	0.76462204469864	0	lncRNA	AK126481	NA	AK126481	NA	NA	XLOC_004598	NA	NA	THC2516773	NA	"BROAD Institute lincRNA (XLOC_004598), lincRNA [TCONS_00009539]"	chr5:148795205-148795264	hs|5q32	Agilent_HUMAN_G3V2	AK126481	AK126481	chr5	148795205	148795264	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1012_PI429285431	1.5304544	A	1.6218812	A	0.938594037068927	0	lncRNA	1001-1_{1..540}	"transcript_id ""ENST00000441383.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441383.1"" | genecode_v17"	chr2	108370568	108371107	+	ENSG00000232991.1	ENST00000441383.1	AC096655.1	AC096655.1-001	RGPD4	NA	chr2:108443388-108448585	inter
LNCA_21_P0009166	12.823462	P	13.327761	P	0.705002852549042	0	lncRNA	ENST00000447729	NA	NA	NA	NA	XLOC_012176	NA	ENST00000447729	THC2722525	NA	"BROAD Institute lincRNA (XLOC_012176), lincRNA [TCONS_00025167]"	chr17:32806888-32806947	hs|17q12	Agilent_HUMAN_G3V2	ENST00000447729	ENST00000447729	chr17	 32806888	 32806947	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33772_PI429285431	9.900334	P	10.0858	P	0.879364989360805	0	lncRNA	35325-1_{1..1145}	n340554|BC030197|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3016|NULL|6.2884600|-0.0427996	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340554|BC030197|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3016|NULL|6.2884600|-0.0427996	chr5	 94955781	 94956925	+	NA	NA	NA	NA	GPR150	NA	chr5:94955980-94957284	inner
CUST_5250_PI429285431	6.5389304	P	6.4481435	P	1.06495088823715	0	lncRNA	5190-1_{1..353}	"transcript_id ""ENST00000565869.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565869.1"" | genecode_v17"	chr15	 78208864	 78209216	+	ENSG00000261244.1	ENST00000565869.1	RP11-114H24.7	RP11-114H24.7-001	NA	"hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0,hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.40;hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0,hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0 3'pad=0 strand=- repeatMasking=none,-97.40;hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0,hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.40;hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0,hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.40"	NA	inter
CUST_7577_PI429285431	5.784783	P	6.0137815	P	0.853226985229425	0	lncRNA	9212-1_{1..2085}	lnc-DEFB1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DEFB1-1:3	chr8	  6692958	  6695042	-	lnc-DEFB1-1	lnc-DEFB1-1:3	ENSG00000186530	XKR5	XKR5	NA	chr8:6682958-6693166	inner
LNCA_21_P0014843	3.168886	P	3.167125	P	1.00122137745964	0	lncRNA	XR_132713	XR_132713	XR_132713	NA	Hs.675932	LOC100507149	NA	NA	THC2486555	NA	"PREDICTED: Homo sapiens hypothetical LOC100507149 (LOC100507149), miscRNA [XR_132713]"	chr3:65554063-65554004	hs|3p14.1	Agilent_HUMAN_G3V2	XR_132713	XR_132713	chr3	 65554004	 65554063	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13526_PI429285431	5.378977	P	5.38449	P	0.996185971547143	0	lncRNA	15166-1_{1..589}	lnc-KLHL31-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL31-1:5	chr6	 53481684	 53482272	-	lnc-KLHL31-1	lnc-KLHL31-1:5	XLOC_005747	linc-GCLC	NA	NA	NA	inter
CUST_36384_PI429285431	1.4042621	A	0.91565305	A	1.40309145653013	0	lncRNA	37602-1_{1..1426}	n344901|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_450|NULL|-1.5235800|-0.1241795	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344901|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_450|NULL|-1.5235800|-0.1241795	chr6	 43817785	 43819210	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36135_PI429285431	0.90534055	A	0.90002656	A	1.00369016915634	0	lncRNA	37421-1_{1..3000}	n344708|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_257|NULL|-1.4103200|-0.2829408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344708|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_257|NULL|-1.4103200|-0.2829408	chr13	 51744126	 51747125	+	NA	NA	NA	NA	NA	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80"	NA	inter
CUST_36134_PI429285431	0.92296827	A	0.9606911	A	0.974191411834015	0	lncRNA	37420-1_{1..1212}	n344707|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_256|NULL|-1.4028200|-0.1533359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344707|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_256|NULL|-1.4028200|-0.1533359	chr2	114736481	114737692	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29298_PI429285431	1.1428065	A	0.95585644	A	1.13835462337081	0	lncRNA	31049-1_{1..372}	n332458|EU008568|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000484259|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000484259|0.3459220|-0.1084531	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332458|EU008568|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000484259|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000484259|0.3459220|-0.1084531	chr21	 35821786	 35822157	-	NA	NA	NA	NA	KCNE1	NA	chr21:35818988-35841893	inner
CUST_34737_PI429285431	2.8366516	P	2.6622121	A	1.12852587717164	0	lncRNA	36182-1_{1..609}	n341644|AY295762|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4115|NULL|-1.3231100|-0.3510486	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341644|AY295762|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4115|NULL|-1.3231100|-0.3510486	chr9	  2192966	  2193574	-	NA	NA	NA	NA	SMARCA2	NA	chr9:2182966-2193624	inner
CUST_38524_PI429285431	2.614799	A	2.4054658	A	1.15615369709585	0	lncRNA	39534-1_{1..1005}	n383178|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ibc.3||-1.2582500|-0.2766466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383178|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ibc.3||-1.2582500|-0.2766466	chr17	 40894171	 40895175	-	NA	NA	NA	NA	EZH1	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10chr17:40884171-40897071"	NA	inner
CUST_28844_PI429285431	0.921875	A	0.92106795	A	1.00055956092791	0	lncRNA	30552-1_{1..727}	n326259|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088229|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088229|-1.1244600|-0.4371819	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326259|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088229|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088229|-1.1244600|-0.4371819	chr1	207607629	207608355	+	NA	NA	NA	NA	CR2	NA	chr1:207627645-207629658	inter
CUST_3505_PI429285431	1.0384452	A	0.9880333	A	1.03556054175761	0	lncRNA	3476-1_{1..3000}	"transcript_id ""ENST00000603487.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000603487.1"" | genecode_v17"	chr9	106842305	106845304	-	ENSG00000270332.1	ENST00000603487.1	RP11-82L2.1	RP11-82L2.1-002	SMC2	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40chr9:106856541-106864755"	NA	inter
LNCA_21_P0013877	17.990623	P	18.045525	P	0.962659832845813	0	lncRNA	TCONS_l2_00030893	NA	NA	NA	NA	XLOC_l2_015885	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015885), lincRNA [TCONS_l2_00030893]"	chrY:10036620-10036679	hs|Yp11.2	Agilent_HUMAN_G3V2	TCONS_l2_00030893	TCONS_l2_00030893	chrY	 10036620	 10036679	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29074_PI429285431	3.0515103	A	3.1811633	P	0.914051273298043	0	lncRNA	30806-1_{1..363}	n326568|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026416|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026416|-1.0694300|-0.5198441	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326568|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026416|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026416|-1.0694300|-0.5198441	chr1	 73544499	 73544861	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6741_PI429285431	10.382515	P	9.961024	P	1.33931099418532	0	lncRNA	6689-1_{1..507}	"transcript_id ""ENST00000525424.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525424.1"" | genecode_v17"	chr20	 57169473	 57169979	+	ENSG00000254620.1	ENST00000525424.1	RP5-907D15.3	RP5-907D15.3-001	NA	NA	NA	inter
CUST_2307_PI429285431	3.3565922	P	3.307069	P	1.03492283300253	0	lncRNA	2299-1_{1..2969}	"transcript_id ""ENST00000413221.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000413221.2"" | genecode_v17"	chr5	111496223	111499191	+	ENSG00000224032.2	ENST00000413221.2	EPB41L4A-AS1	EPB41L4A-AS1-001	EPB41L4A	NA	chr5:111498315-111509973	inner
CUST_31749_PI429285431	4.3110266	P	4.122688	P	1.13945077452313	0	lncRNA	33490-1_{1..741}	n338286|BC054045|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|679|NULL|1.9307600|-0.1722784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338286|BC054045|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|679|NULL|1.9307600|-0.1722784	chr1	156374047	156374787	-	NA	NA	NA	NA	C1orf61	NA	chr1:156374055-156399184	inner
CUST_35092_PI429285431	4.875235	P	4.5808415	P	1.22636931085805	0	lncRNA	36499-1_{1..1617}	n342056|CR622106|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4537|NULL|-1.0814500|-0.3354599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342056|CR622106|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4537|NULL|-1.0814500|-0.3354599	chr12	125514066	125515682	+	NA	NA	NA	NA	BRI3BP	NA	chr12:125504066-125510349	inter
CUST_44364_PI429285431	1.4908401	A	0.9100747	A	1.49564252867257	0	lncRNA	48983-1_{1..898}	"gi|323510677|ref|NR_037877.1| Homo sapiens uncharacterized LOC100505912 (LOC100505912), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|323510677|ref|NR_037877.1| Homo sapiens uncharacterized LOC100505912 (LOC100505912), non-coding RNA"	Chr4	 22328977	 22329874	-	100505912	NR_037877.1	NA	NA	NA	NA	NA	inter
CUST_21480_PI429285431	0.9151443	A	0.92549443	A	0.992851509452018	0	lncRNA	23098-1_{1..1708}	lnc-PRSS38-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRSS38-1:1	chr1	227933476	227935183	+	lnc-PRSS38-1	lnc-PRSS38-1:1	ENSG00000230005.1	SNAP47-AS1	SNAP47	NA	chr1:227923476-227944892	inner
CUST_56_PI429285431	4.4380007	P	4.918055	P	0.716950638989436	0	lncRNA	55-1_{1..327}	"transcript_id ""ENST00000560742.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000560742.1"" | genecode_v17"	chr14	103587190	103587516	-	ENSG00000259717.1	ENST00000560742.1	LINC00677	LINC00677-001	TNFAIP2	NA	chr14:103592664-103599344	inter
CUST_8580_PI429285431	3.6922753	P	2.402022	A	2.44570992120624	0	lncRNA	10137-1_{1..2915}	lnc-AC073263.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC073263.1-2:1	chr2	 74380783	 74383697	+	lnc-AC073263.1-2	lnc-AC073263.1-2:1	ENSG00000245500	XLOC_001532	MOBKL1B	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10chr2:74383211-74391319"	NA	inter
CUST_24857_PI429285431	0.8963112	A	0.90038484	A	0.997180350619006	0	lncRNA	26397-1_{1..435}	lnc-PHOX2B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHOX2B-1:1	chr4	 41694559	 41694993	-	lnc-PHOX2B-1	lnc-PHOX2B-1:1	ENSG00000249216.1	RP11-227F19.5	LIMCH1	NA	chr4:41684559-41702061	inner
CUST_50517_PI429285431	5.5790534	P	5.626647	P	0.967548844914617	0	lncRNA	54213-1_{1..1016}	hg19_lincRNAsTranscripts_TCONS_l2_00030611 range=chrX:134568606-134569791 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030611 range=chrX:134568606-134569791 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	134568606	134569621	-	NA	NA	NA	NA	NA	"hg19_refFlat_CROCC:range=chr1:17248514-172989415'pad=0,hg19_refFlat_CROCC:range=chr1:17248514-172989415'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.10"	NA	inter
CUST_9418_PI429285431	0.9102849	A	0.9135071	A	0.997769033468168	0	lncRNA	10921-1_{1..577}	lnc-SLC1A4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC1A4-1:1	chr2	 65161583	 65162159	+	lnc-SLC1A4-1	lnc-SLC1A4-1:1	XLOC_001499	linc-SLC1A4-1	NA	NA	NA	inter
CUST_9310_PI429285431	6.887738	P	7.201673	P	0.804444614028999	0	lncRNA	10816-1_{1..1438}	lnc-SUPT3H-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUPT3H-1:7	chr6	 45544322	 45545759	-	lnc-SUPT3H-1	lnc-SUPT3H-1:7	XLOC_005737	linc-SUPT3H	NA	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20"	NA	inter
CUST_30625_PI429285431	0.9092709	A	0.898579	A	1.00743859021401	0	lncRNA	32407-1_{1..395}	n335965|X72462|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323304|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323304|2.6921000|-0.0732497	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335965|X72462|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323304|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323304|2.6921000|-0.0732497	chr2	 89161396	 89161790	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38351_PI429285431	4.3373456	P	3.8267713	P	1.42461718640577	0	lncRNA	39394-3_{6001..6322}	n382104|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vrk.2||0.5301040|-0.2365967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382104|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vrk.2||0.5301040|-0.2365967	chr13	111522333	111522654	-	NA	NA	NA	NA	ANKRD10	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_LOC100130451:range=chr2:214142441-2141488025'pad=0,hg19_refFlat_LOC100130451:range=chr2:214142441-2141488025'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00chr13:111530887-111532655"	NA	inter
CUST_38278_PI429285431	3.481461	A	2.7164707	A	1.69935857255454	0	lncRNA	39333-1_{1..2558}	n381892|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001svy.1||-0.0152401|-0.3394250	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381892|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001svy.1||-0.0152401|-0.3394250	chr12	 70825516	 70828073	+	NA	NA	NA	NA	KCNMB4	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40chr12:70815516-70824978"	NA	inner
CUST_30007_PI429285431	4.156805	P	4.058833	P	1.07026792633557	0	lncRNA	31773-1_{1..387}	n334408|S83275|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000217198|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000217198|2.4385300|-0.1343421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334408|S83275|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000217198|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000217198|2.4385300|-0.1343421	chr17	 47237937	 47238323	+	NA	NA	NA	NA	B4GALNT2	NA	chr17:47227937-47247351	inner
CUST_6454_PI429285431	0.9265985	A	0.954627	A	0.980759629190185	0	lncRNA	6395-1_{1..616}	"transcript_id ""ENST00000585739.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585739.1"" | genecode_v17"	chr19	 32516888	 32517503	+	ENSG00000267779.1	ENST00000585739.1	CTC-360P9.3	CTC-360P9.3-003	NA	NA	NA	inter
CUST_51346_PI429285431	6.791623	P	6.9394507	P	0.902608518892345	0	lncRNA	54945-1_{1..367}	hg19_lincRNAsTranscripts_TCONS_l2_00008752 range=chr15:78191819-78193908 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008752 range=chr15:78191819-78193908 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 78191819	 78192185	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6595_PI429285431	5.8593216	P	5.0545316	P	1.74689149421401	0	lncRNA	6543-1_{1..468}	"transcript_id ""ENST00000586822.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586822.1"" | genecode_v17"	chr19	 56988972	 56989439	+	ENSG00000166770.6	ENST00000586822.1	AC004696.2	AC004696.2-003	ZNF667	NA	chr19:56978972-56988770	inter
CUST_24572_PI429285431	0.915439	A	1.0337673	A	0.921254521462925	0	lncRNA	26120-1_{1..898}	lnc-TNFRSF10B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TNFRSF10B-2:1	chr8	 22755230	 22756127	-	lnc-TNFRSF10B-2	lnc-TNFRSF10B-2:1	ENSG00000253142.1	RP11-87E22.1	PEBP4	NA	chr8:22745230-22765326	inner
CUST_13841_PI429285431	5.5847864	P	5.739627	P	0.898231610910894	0	lncRNA	15484-1_{1..322}	lnc-OR6B2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR6B2-1:1	chr2	240834622	240834943	-	lnc-OR6B2-1	lnc-OR6B2-1:1	XLOC_002541	linc-HDAC4-1	NA	NA	NA	inter
CUST_35472_PI429285431	2.1331162	A	1.0681634	A	2.09210143213071	0	lncRNA	36881-1_{1..2145}	n342568|AK092114|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5067|NULL|0.8659100|-0.3249581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342568|AK092114|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5067|NULL|0.8659100|-0.3249581	chr18	 14183939	 14186083	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40"	NA	inter
CUST_40422_PI429285431	9.195662	P	8.753201	P	1.35892044577378	0	lncRNA	41207-1_{1..1843}	n409288|NR_033494|lncRNA|Homosapiens||RefGeneNoncode|NR_033494||4.1373200|-0.0915648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409288|NR_033494|lncRNA|Homosapiens||RefGeneNoncode|NR_033494||4.1373200|-0.0915648	chr10	  5994333	  5996175	-	NA	NA	NA	NA	IL15RA	NA	chr10:5994334-6020142	inner
CUST_23373_PI429285431	0.889738	A	0.88656765	A	1.00219993547877	0	lncRNA	24941-1_{1..97}	lnc-GTF2A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTF2A2-1:1	chr15	 59964434	 59964530	-	lnc-GTF2A2-1	lnc-GTF2A2-1:1	ENSG00000227161.1	AC092755.4	BNIP2	NA	chr15:59955061-59974501	inner
CUST_9884_PI429285431	0.8937532	A	0.90006644	A	0.995633556250465	0	lncRNA	11408-1_{1..268}	lnc-FOXA2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXA2-5:1	chr20	 22452018	 22452285	-	lnc-FOXA2-5	lnc-FOXA2-5:1	XLOC_013682	linc-NKX2-2-3	NA	NA	NA	inter
CUST_30113_PI429285431	6.082306	P	6.3282924	P	0.843239059260006	0	lncRNA	31886-1_{1..353}	n334669|AF527735|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243681|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243681|-1.0705200|-0.1098479	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334669|AF527735|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243681|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243681|-1.0705200|-0.1098479	chr16	   819090	   819442	-	NA	NA	NA	NA	MSLNL	NA	chr16:819428-829443	inter
CUST_50506_PI429285431	13.836878	P	13.964148	P	0.915562323133745	0	lncRNA	54202-1_{1..1090}	hg19_lincRNAsTranscripts_TCONS_l2_00030333 range=chrX:114937328-114938501 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030333 range=chrX:114937328-114938501 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	114937328	114938417	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38246_PI429285431	5.422471	P	5.5390673	P	0.922361180154188	0	lncRNA	39305-2_{3001..5341}	n381749|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pcd.2||0.3573550|-0.3043259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381749|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pcd.2||0.3573550|-0.3043259	chr11	 86537418	 86539758	+	NA	NA	NA	NA	FZD4	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.80;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60chr11:86656717-86658860"	NA	inter
CUST_51150_PI429285431	4.534903	P	4.6482472	P	0.924442697098443	0	lncRNA	54773-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008349 range=chr14:19935905-19974840 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008349 range=chr14:19935905-19974840 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr14	 19935905	 19938904	-	NA	NA	NA	NA	POTEM	NA	chr14:19983954-19984840	inter
CUST_50643_PI429285431	4.498851	P	3.1017423	P	2.63373227546077	0	lncRNA	54323-1_{1..287}	hg19_lincRNAsTranscripts_TCONS_l2_00002953 range=chr10:30974321-30980008 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002953 range=chr10:30974321-30980008 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 30974321	 30974607	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14015_PI429285431	3.4754305	P	3.9363523	P	0.726521904191276	0	lncRNA	15663-1_{1..522}	lnc-SLFN5-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLFN5-1:4	chr17	 33651673	 33652194	+	lnc-SLFN5-1	lnc-SLFN5-1:4	XLOC_012177	linc-AP2B1-2	NA	NA	NA	inter
CUST_46398_PI429285431	2.100459	A	2.2622092	A	0.893939933016924	0	lncRNA	50615-1_{1..3000}	"gi|381140055|ref|NR_046473.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 16, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|381140055|ref|NR_046473.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 16, non-coding RNA"	Chr14	101292445	101295444	+	55384	NR_046473.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70"	NA	inter
CUST_18604_PI429285431	4.674335	P	4.9064164	P	0.851405668229421	0	lncRNA	20311-1_{1..2085}	lnc-RBM24-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RBM24-1:3	chr6	 17130825	 17132909	+	lnc-RBM24-1	lnc-RBM24-1:3	ENSG00000230873	RP3-486B10.1	FLJ23152	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr6:17120825-17131603"	NA	inner
CUST_51893_PI429285431	2.7544188	A	4.2303886	A	0.359491658387986	0	lncRNA	55441-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00012717 range=chr19:56116597-56128713 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012717 range=chr19:56116597-56128713 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 56116597	 56119596	+	NA	NA	NA	NA	ZNF784	NA	chr19:56132107-56135941	inner
CUST_447_PI429285431	3.060236	A	3.1487107	P	0.940516591869099	0	lncRNA	439-1_{1..425}	"transcript_id ""ENST00000457390.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457390.1"" | genecode_v17"	chr1	148932785	148933209	+	ENSG00000232527.3	ENST00000457390.1	RP11-14N7.2	RP11-14N7.2-004	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
CUST_46955_PI429285431	6.555685	P	6.8294973	P	0.827130974264624	0	lncRNA	51060-1_{1..1914}	"gi|207029354|ref|NR_015454.1| Homo sapiens MAFG antisense RNA 1 (head to head) (MAFG-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|207029354|ref|NR_015454.1| Homo sapiens MAFG antisense RNA 1 (head to head) (MAFG-AS1), non-coding RNA"	Chr17	 79885705	 79887618	+	92659	NR_015454.1	NA	NA	NA	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70"	NA	inter
CUST_6865_PI429285431	6.744725	P	6.956297	P	0.863595720921011	0	lncRNA	6815-1_{1..1790}	"transcript_id ""ENST00000411989.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411989.1"" | genecode_v17"	chr21	 40110945	 40112734	-	ENSG00000223806.3	ENST00000411989.1	LINC00114	LINC00114-004	NA	NA	NA	inter
LNCA_21_P0011027	0.9078125	A	0.89860845	A	1.006400155331	0	lncRNA	ENST00000439483	NA	NA	NA	NA	XLOC_l2_002477	NA	ENST00000439483	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002477), lincRNA [TCONS_l2_00005336]"	chr11:116525847-116525906	hs|11q23.3	Agilent_HUMAN_G3V2	ENST00000439483	ENST00000439483	chr11	116525847	116525906	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2023_PI429285431	0.9139891	A	0.9196481	A	0.996085163137475	0	lncRNA	2014-1_{1..646}	"transcript_id ""ENST00000508799.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508799.1"" | genecode_v17"	chr4	189911869	189912514	-	ENSG00000250024.1	ENST00000508799.1	RP11-818C3.1	RP11-818C3.1-001	NA	NA	NA	inter
CUST_37737_PI429285431	6.1072054	P	5.9064503	P	1.14929973583969	0	lncRNA	38830-1_{1..463}	n346238|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1788|NULL|-1.5725700|-0.1604371	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346238|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1788|NULL|-1.5725700|-0.1604371	chr1	143916237	143916699	+	NA	NA	NA	NA	FAM72D	NA	chr1:143906237-143913143	inter
LNCA_21_P0004426	0.906202	A	0.8967479	A	1.00657460118489	0	lncRNA	TCONS_00010427	NA	NA	NA	NA	XLOC_004940	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004940), lincRNA [TCONS_00010427]"	chr5:100348598-100348539	hs|5q21.1	Agilent_HUMAN_G3V2	TCONS_00010427	TCONS_00010427	chr5	100348539	100348598	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008805	3.1918144	P	2.7862349	A	1.32462087566071	0	lncRNA	TCONS_00023843	NA	NA	NA	NA	XLOC_011616	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011616), lincRNA [TCONS_00023843]"	chr15:102142997-102142938	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_00023843	TCONS_00023843	chr15	102142938	102142997	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1414_PI429285431	1.2466733	A	0.9172742	A	1.25648992220988	0	lncRNA	1403-1_{1..364}	"transcript_id ""ENST00000596305.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596305.1"" | genecode_v17"	chr3	107011404	107011767	-	ENSG00000239828.2	ENST00000596305.1	RP11-446H18.5	RP11-446H18.5-006	CCDC54	NA	chr3:107046680-107051591	inter
CUST_21713_PI429285431	0.91239333	A	0.89318246	A	1.01340501260998	0	lncRNA	23323-1_{1..368}	lnc-CDK5-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK5-2:11	chr7	150712970	150713337	-	lnc-CDK5-2	lnc-CDK5-2:11	ENSG00000181652.11	ATG9B	NOS3	NA	chr7:150702970-150711687	inter
CUST_43644_PI429285431	5.070516	P	4.530232	P	1.45425876550799	0	lncRNA	48402-1_{1..3000}	"gi|302370948|ref|NR_036493.1| Homo sapiens peroxisomal biogenesis factor 19 (PEX19), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|302370948|ref|NR_036493.1| Homo sapiens peroxisomal biogenesis factor 19 (PEX19), transcript variant 3, non-coding RNA"	Chr1	160246599	160249598	-	5824	NR_036493.1	NA	NA	NA	NA	NA	inter
CUST_6955_PI429285431	4.2685313	P	4.9495025	P	0.623745237433618	0	lncRNA	6904-1_{1..3000}	"transcript_id ""ENST00000434868.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434868.1"" | genecode_v17"	chr22	 27254597	 27257596	+	ENSG00000223704.1	ENST00000434868.1	RP1-90L6.2	RP1-90L6.2-001	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20"	NA	inter
CUST_6940_PI429285431	0.9120195	A	1.2494266	A	0.791462499297977	0	lncRNA	6889-1_{1..416}	"transcript_id ""ENST00000451574.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451574.1"" | genecode_v17"	chr22	 21673559	 21673974	-	ENSG00000206142.5	ENST00000451574.1	FAM230C	FAM230C-006	RIMBP3B	NA	chr22:21663559-21689256	inter
LNCA_21_P0006296	0.90600574	A	0.8962592	A	1.00677865852499	0	lncRNA	TCONS_00016407	NA	NA	NA	NA	XLOC_007778	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007778), lincRNA [TCONS_00016407]"	chr9:94763524-94763465	hs|9q22.31	Agilent_HUMAN_G3V2	TCONS_00016407	TCONS_00016407	chr9	 94763465	 94763524	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18529_PI429285431	1.4105668	A	1.8257622	A	0.749917918162188	0	lncRNA	20243-1_{1..1913}	lnc-MST1P9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MST1P9-1:1	chr1	 16975271	 16977183	-	lnc-MST1P9-1	lnc-MST1P9-1:1	ENSG00000256048	AL137798.3	NA	"hg19_refFlat_MST1:range=chr3:49721461-497261245'pad=0,hg19_refFlat_MST1:range=chr3:49721461-497261245'pad=0 3'pad=0 strand=- repeatMasking=none,-98.90;hg19_refFlat_MST1L:range=chr1:17083727-170909755'pad=0,hg19_refFlat_MST1L:range=chr1:17083727-170909755'pad=0 3'pad=0 strand=- repeatMasking=none,-99.70"	NA	inter
CUST_38965_PI429285431	1.8790026	A	3.36134	A	0.357908472223751	0	lncRNA	39949-1_{1..3000}	n385185|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tsz.2||0.8589040|-0.3636076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385185|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tsz.2||0.8589040|-0.3636076	chr7	 63813368	 63816367	+	NA	NA	NA	NA	ZNF736	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40chr7:63803368-63810017"	NA	inter
LNCA_21_P0013002	4.656765	P	4.8404984	P	0.880421694331465	0	lncRNA	TCONS_l2_00023847	NA	NA	NA	NA	XLOC_l2_012163	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012163), lincRNA [TCONS_l2_00023847]"	chr5:102779474-102779415	hs|5q21.1	Agilent_HUMAN_G3V2	TCONS_l2_00023847	TCONS_l2_00023847	chr5	102779415	102779474	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27657_PI429285431	0.8990288	A	0.8991708	A	0.999901577944129	0	lncRNA	29235-1_{1..778}	n324864|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171080|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171080|-0.1477640|-0.4291500	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324864|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171080|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171080|-0.1477640|-0.4291500	chr21	 24255090	 24255867	-	NA	NA	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90"	NA	inter
CUST_81_PI429201921	0.9071191	A	0.91210276	A	0.996551549731646	0	lncRNA	83-1_{1..2431}	TC15002057.hg.1	TCONS_l2_00008388-XLOC_l2_004549 // Broad TUCP // linc-OR4M2-10 chr15:+:20084118-20086550 // chr15 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr15:+:20084118-20086550	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00008388-XLOC_l2_004549	linc-OR4M2-10	chr15	 20084118	 20086550	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33004_PI429285431	0.9144564	A	0.9106415	A	1.00264778639009	0	lncRNA	34619-1_{1..1645}	n339686|CR622110|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2131|NULL|-1.1474100|-0.2504639	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339686|CR622110|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2131|NULL|-1.1474100|-0.2504639	chr3	171178400	171180044	+	NA	NA	NA	NA	TNIK	NA	chr3:171168400-171178197	inter
CUST_41997_PI429285431	0.90697974	A	0.98492897	A	0.947403410164069	0	lncRNA	43830-1_{1..71}	ENST00000579420 ncrna:miRNA chromosome:GRCh37:9:139781185:139781255:1 gene:ENSG00000266507 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579420 ncrna:miRNA chromosome:GRCh37:9:139781185:139781255:1 gene:ENSG00000266507 gene_biotype:miRNA transcript_biotype:miRNA	chr9	139781185	139781255	+	ENSG00000266507	ENST00000579420	NA	NA	TRAF2	NA	chr9:139780965-139791255	inner
CUST_46866_PI429285431	9.90579	P	10.139059	P	0.850705095145317	0	lncRNA	50996-1_{1..489}	"gi|283046788|ref|NR_033202.1| Homo sapiens HOXB cluster antisense RNA 3 (HOXB-AS3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|283046788|ref|NR_033202.1| Homo sapiens HOXB cluster antisense RNA 3 (HOXB-AS3), transcript variant 2, non-coding RNA"	Chr17	 46667842	 46668330	+	404266	NR_033202.1	NA	NA	NA	NA	NA	inter
CUST_388_PI429285431	1.151917	A	0.89797515	A	1.19246080743024	0	lncRNA	380-1_{1..369}	"transcript_id ""ENST00000437523.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437523.1"" | genecode_v17"	chr1	121236177	121236545	-	ENSG00000228826.1	ENST00000437523.1	AL592494.4	AL592494.4-001	NA	NA	NA	inter
LNCA_21_P0001478	0.90951556	A	0.89935124	A	1.00707024675602	0	lncRNA	TCONS_00001418	NA	NA	NA	NA	XLOC_000737	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000737), lincRNA [TCONS_00001418]"	chr1:23878472-23878413	hs|1p36.12	Agilent_HUMAN_G3V2	TCONS_00001418	TCONS_00001418	chr1	 23878413	 23878472	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48020_PI429285431	3.191351	P	0.9091381	A	4.86423489994767	0	lncRNA	51903-1_{1..1755}	"gi|410173616|ref|XR_172300.1| PREDICTED: Homo sapiens zinc finger protein 807 (ZNF807), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173616|ref|XR_172300.1| PREDICTED: Homo sapiens zinc finger protein 807 (ZNF807), misc_RNA"	NA	NA	NA	NA	NA	XR_172300.1	NA	NA	NA	NA	NA	Unknown
CUST_4695_PI429285431	0.8907535	A	0.89494467	A	0.997099118044144	0	lncRNA	4642-1_{1..650}	"transcript_id ""ENST00000422994.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422994.1"" | genecode_v17"	chr13	111748185	111748834	+	ENSG00000225870.1	ENST00000422994.1	RP11-551M15.1	RP11-551M15.1-001	NA	NA	NA	inter
CUST_24967_PI429285431	4.1684294	P	3.595203	P	1.48784722978144	0	lncRNA	26505-1_{1..1163}	lnc-CDK2AP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CDK2AP1-1:1	chr12	123745676	123746838	-	lnc-CDK2AP1-1	lnc-CDK2AP1-1:1	ENSG00000235423.3	RP11-282O18.3	C12orf65	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80chr12:123735676-123742506"	NA	inter
LNCA_21_P0005586	5.577841	P	5.729249	P	0.900371315185388	0	lncRNA	TCONS_00014237	NA	NA	NA	NA	XLOC_006306	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006306), lincRNA [TCONS_00014237]"	chr7:155211285-155211344	hs|7q36.3	Agilent_HUMAN_G3V2	TCONS_00014237	TCONS_00014237	chr7	155211285	155211344	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40096_PI429285431	1.72242	A	2.688026	A	0.512063275595202	0	lncRNA	40941-1_{1..2857}	n407464|NR_026921|lncRNA|Homosapiens||RefGeneNoncode|NR_026921||5.3392800|-0.1505767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407464|NR_026921|lncRNA|Homosapiens||RefGeneNoncode|NR_026921||5.3392800|-0.1505767	chr5	177045500	177048356	-	NA	NA	NA	NA	B4GALT7	NA	chr5:177035500-177037348	inter
CUST_32789_PI429285431	0.9206862	A	0.9214944	A	0.999439955332264	0	lncRNA	34424-1_{1..2757}	n339431|BX648634|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1863|NULL|-0.8346690|-0.4029700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339431|BX648634|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1863|NULL|-0.8346690|-0.4029700	chrY	 21853826	 21856582	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36617_PI429285431	3.3684473	P	2.9109035	A	1.37320193944215	0	lncRNA	37810-1_{1..1958}	n345113|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_662|NULL|-1.6379000|-0.1614367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345113|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_662|NULL|-1.6379000|-0.1614367	chr10	 32048433	 32050390	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50"	NA	inter
LNCA_21_P0014315	0.9152266	A	1.4688212	A	0.681320442739969	0	lncRNA	XR_109249	XR_109249	XR_109249	NA	NA	LOC100507570	uncharacterized LOC100507570	NA	THC2618039	NA	"PREDICTED: Homo sapiens hypothetical LOC100507570 (LOC100507570), miscRNA [XR_109249]"	chr16:4684385-4684326	hs|16p13.3	Agilent_HUMAN_G3V2	XR_109249	XR_109249	chr16	  4684326	  4684385	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21593_PI429285431	0.910904	A	0.9271358	A	0.988812029688693	0	lncRNA	23206-1_{1..497}	lnc-SMPD2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMPD2-2:1	chr6	109830382	109830878	+	lnc-SMPD2-2	lnc-SMPD2-2:1	ENSG00000223537.1	RP5-919F19.5	AKD1	"hg19_refFlat_AKD1:range=chr6:109814572-1099969485'pad=0,hg19_refFlat_AKD1:range=chr6:109814572-1099969485'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30chr6:109820382-109840496"	NA	inner
CUST_24159_PI429285431	5.619203	P	5.993305	P	0.771585533722584	0	lncRNA	25710-1_{1..575}	lnc-CDK5RAP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK5RAP3-1:1	chr17	 46051766	 46052340	+	lnc-CDK5RAP3-1	lnc-CDK5RAP3-1:1	ENSG00000263798.1	RP11-6N17.9	CDK5RAP3	NA	chr17:46048429-46059147	inner
CUST_32969_PI429285431	1.2575455	A	0.8953265	A	1.28540144561332	0	lncRNA	34586-1_{1..1835}	n339645|AF111846|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2089|NULL|-1.3028000|-0.4626606	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339645|AF111846|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2089|NULL|-1.3028000|-0.4626606	chr3	152047573	152049407	-	NA	NA	NA	NA	MBNL1	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40chr3:152037573-152059393"	NA	inner
CUST_48119_PI429285431	0.9176368	A	0.91302407	A	1.00320241761225	0	lncRNA	51990-1_{1..1143}	"gi|310109948|ref|XR_111050.1| PREDICTED: Homo sapiens uncharacterized LOC100509635 (LOC100509635), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310109948|ref|XR_111050.1| PREDICTED: Homo sapiens uncharacterized LOC100509635 (LOC100509635), misc_RNA"	NA	NA	NA	NA	NA	XR_111050.1	NA	NA	NA	NA	NA	Unknown
CUST_10873_PI429285431	0.8975849	A	0.8886358	A	1.00622232214909	0	lncRNA	12412-1_{1..1440}	lnc-FAN1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAN1-2:4	chr15	 31695631	 31697070	+	lnc-FAN1-2	lnc-FAN1-2:4	XLOC_011202	linc-CHRNA7	NA	NA	NA	inter
CUST_22110_PI429285431	2.8204653	A	3.467857	P	0.638433517692937	0	lncRNA	23715-1_{1..730}	lnc-JMJD8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JMJD8-1:1	chr16	   729604	   730333	-	lnc-JMJD8-1	lnc-JMJD8-1:1	ENSG00000260394.2	LA16c-313D11.9	RHOT2	NA	chr16:719604-724171	inter
CUST_4148_PI429285431	1.2383802	A	0.9198367	A	1.24707090919537	0	lncRNA	4106-2_{3001..3387}	"transcript_id ""ENST00000544842.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544842.1"" | genecode_v17"	chr12	  5428127	  5428513	+	ENSG00000256146.1	ENST00000544842.1	RP11-319E16.2	RP11-319E16.2-001	NA	NA	NA	inter
CUST_21734_PI429285431	1.1584431	A	0.9228303	A	1.1774067470062	0	lncRNA	23344-1_{1..307}	lnc-PTX4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PTX4-1:1	chr16	  1522531	  1522837	-	lnc-PTX4-1	lnc-PTX4-1:1	ENSG00000261430.1	LA16c-390E6.3	CLCN7	NA	chr16:1512531-1525085	inner
CUST_35049_PI429285431	6.800065	P	6.673048	P	1.09203341364783	0	lncRNA	36459-1_{1..1902}	n341996|AK021579|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4477|NULL|-0.2736940|-0.3183077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341996|AK021579|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4477|NULL|-0.2736940|-0.3183077	chr12	 99597099	 99599000	-	NA	NA	NA	NA	ANKS1B	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30chr12:99587099-99608534"	NA	inner
CUST_7647_PI429285431	7.370252	P	7.285272	P	1.06067303721579	0	lncRNA	9279-1_{1..1533}	lnc-CEP41-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CEP41-1:1	chr7	129982654	129984186	-	lnc-CEP41-1	lnc-CEP41-1:1	ENSG00000248239	ENST00000504316	CPA5	NA	chr7:129984630-129992742	inter
CUST_23187_PI429285431	7.727675	P	8.375636	P	0.638181635979562	0	lncRNA	24759-1_{1..619}	lnc-C21orf2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C21orf2-1:1	chr21	 45749963	 45750581	-	lnc-C21orf2-1	lnc-C21orf2-1:1	ENSG00000241728.1	AP001062.8	PFKL	NA	chr21:45739963-45747261	inner
CUST_21923_PI429285431	2.5384288	A	4.601108	P	0.239371085572746	0	lncRNA	23532-1_{1..3000}	lnc-GNRH1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNRH1-2:1	chr8	 24812986	 24815985	-	lnc-GNRH1-2	lnc-GNRH1-2:1	ENSG00000104725.9	NEFL	NEFL	NA	chr8:24808468-24814131	inner
CUST_26667_PI429285431	1.5264199	A	0.918451	A	1.52411197489078	0	lncRNA	28167-1_{1..3000}	lnc-CEMP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CEMP1-1:1	chr16	  2615357	  2618356	-	lnc-CEMP1-1	lnc-CEMP1-1:1	ENSG00000261613.1	RP11-20I23.8	PDPK1	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-59.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_PDPK1:range=chr16:2588114-26476735'pad=0,hg19_refFlat_PDPK1:range=chr16:2588114-26476735'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.80;hg19_refFlat_PDPK1:range=chr16:2588114-26477685'pad=0,hg19_refFlat_PDPK1:range=chr16:2588114-26477685'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.11;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80chr16:2605357-2626295"	NA	inner
CUST_27943_PI429285431	0.89829236	A	0.90367824	A	0.996273752218991	0	lncRNA	29547-1_{1..319}	n325190|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330060|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330060|-1.1384500|-0.2600297	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325190|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330060|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330060|-1.1384500|-0.2600297	chr2	107364079	107364397	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49924_PI429285431	0.9151985	A	0.91669345	A	0.998964316313365	0	lncRNA	53674-1_{1..1024}	hg19_lincRNAsTranscripts_TCONS_l2_00027181 range=chr7:98836534-98855779 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027181 range=chr7:98836534-98855779 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 98836534	 98837557	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36644_PI429285431	0.90782547	A	0.90066653	A	1.00497453117631	0	lncRNA	37834-1_{1..3000}	n345138|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_687|NULL|-1.3192600|-0.2558006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n345138|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_687|NULL|-1.3192600|-0.2558006	chr11	 12981280	 12984279	-	NA	NA	NA	NA	NA	"hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0,hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20"	NA	inter
LNCA_21_P0005151	4.7270937	P	5.0288353	P	0.811272448949796	0	lncRNA	TCONS_00012638	NA	NA	NA	NA	XLOC_005572	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005572), lincRNA [TCONS_00012638]"	chr6:1060150-1060091	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_00012638	TCONS_00012638	chr6	  1060091	  1060150	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_505_PI429285431	0.9005725	A	0.89626527	A	1.00299000550657	0	lncRNA	497-1_{1..333}	"transcript_id ""ENST00000449525.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449525.1"" | genecode_v17"	chr1	184298205	184298537	+	ENSG00000231791.1	ENST00000449525.1	RP11-382D12.1	RP11-382D12.1-001	NA	NA	NA	inter
CUST_49271_PI429285431	2.4783843	A	2.8556776	A	0.769880641538235	0	lncRNA	53091-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00022640 range=chr5:173930697-173959574 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022640 range=chr5:173930697-173959574 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	173930697	173933696	+	NA	NA	NA	NA	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.34;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10"	NA	inter
CUST_47153_PI429285431	15.172326	P	15.370387	P	0.871721380653584	0	lncRNA	51232-1_{1..1984}	"gi|341926197|ref|NR_040599.1| Homo sapiens uncharacterized LOC100505812 (LOC100505812), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|341926197|ref|NR_040599.1| Homo sapiens uncharacterized LOC100505812 (LOC100505812), non-coding RNA"	Chr19	 48758932	 48760915	+	100505812	NR_040599.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10"	NA	inter
CUST_12729_PI429285431	1.1626973	A	0.9018424	A	1.19818850668415	0	lncRNA	14349-1_{1..533}	lnc-LAMA1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LAMA1-3:1	chr18	  6729719	  6730251	-	lnc-LAMA1-3	lnc-LAMA1-3:1	XLOC_012748	linc-L3MBTL4	NA	NA	NA	inter
CUST_12777_PI429285431	0.9109769	A	1.2653451	A	0.782212122590913	0	lncRNA	14401-1_{1..1231}	lnc-NGLY1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NGLY1-1:9	chr3	 25902182	 25903412	-	lnc-NGLY1-1	lnc-NGLY1-1:9	XLOC_003069	linc-NGLY1-1	NA	NA	NA	inter
CUST_8907_PI429285431	8.307943	P	8.629166	P	0.800391083186707	0	lncRNA	10442-2_{3001..4166}	lnc-C1QL4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1QL4-1:1	chr12	 49721275	 49722440	-	lnc-C1QL4-1	lnc-C1QL4-1:1	ENSG00000246003	ENSG00000258334.1	TROAP	"hg19_refFlat_KRT80:range=chr12:52565182-525856865'pad=0,hg19_refFlat_KRT80:range=chr12:52565182-525856865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_KRT7:range=chr12:52627081-526425445'pad=0,hg19_refFlat_KRT7:range=chr12:52627081-526425445'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.50;hg19_refFlat_PRPH:range=chr12:49688984-496921365'pad=0,hg19_refFlat_PRPH:range=chr12:49688984-496921365'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.00;hg19_refFlat_KRT80:range=chr12:52565307-525856865'pad=0,hg19_refFlat_KRT80:range=chr12:52565307-525856865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_KRT6A:range=chr12:52881504-528869725'pad=0,hg19_refFlat_KRT6A:range=chr12:52881504-528869725'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_TROAP:range=chr12:49717392-497180355'pad=0,hg19_refFlat_TROAP:range=chr12:49717392-497180355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_KRT8:range=chr12:53291212-532987655'pad=0,hg19_refFlat_KRT8:range=chr12:53291212-532987655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_KRT6C:range=chr12:52862846-528675215'pad=0,hg19_refFlat_KRT6C:range=chr12:52862846-528675215'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_KRT84:range=chr12:52771818-527793695'pad=0,hg19_refFlat_KRT84:range=chr12:52771818-527793695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_KRT6B:range=chr12:52840974-528458625'pad=0,hg19_refFlat_KRT6B:range=chr12:52840974-528458625'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_KRT3:range=chr12:53183826-531898265'pad=0,hg19_refFlat_KRT3:range=chr12:53183826-531898265'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_KRT8:range=chr12:53291212-533202335'pad=0,hg19_refFlat_KRT8:range=chr12:53291212-533202335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90chr12:49716971-49725514"	NA	inner
CUST_31397_PI429285431	5.068796	P	3.6604745	P	2.65428171352786	0	lncRNA	33173-2_{3001..3783}	n337863|AK125879|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|246|NULL|-0.2585130|-0.3162182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337863|AK125879|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|246|NULL|-0.2585130|-0.3162182	chr1	 36394432	 36395214	+	NA	NA	NA	NA	EIF2C3	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90chr1:36396683-36405210"	NA	inter
CUST_24800_PI429285431	2.5623825	A	1.9112071	A	1.57044715758988	0	lncRNA	26343-1_{1..576}	lnc-U2SURP-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-U2SURP-2:3	chr3	142683588	142684163	+	lnc-U2SURP-2	lnc-U2SURP-2:3	ENSG00000241570.2	RP11-372E1.6	PAQR9	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr3:142680073-142682178"	NA	inter
CUST_44023_PI429285431	0.8871532	A	0.89482796	A	0.994694386494322	0	lncRNA	48708-1_{1..3000}	"gi|333805640|ref|NR_038272.1| Homo sapiens TTN antisense RNA 1 (TTN-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|333805640|ref|NR_038272.1| Homo sapiens TTN antisense RNA 1 (TTN-AS1), transcript variant 1, non-coding RNA"	Chr2	179387554	179390553	+	100506866	NR_038272.1	NA	NA	NA	"hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70"	NA	inter
LNCA_21_P0008341	0.90357596	A	0.9161011	A	0.991355812223223	0	lncRNA	TCONS_00022517	NA	NA	NA	NA	XLOC_010841	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010841), lincRNA [TCONS_00022517]"	chr14:56963208-56963267	hs|14q22.3	Agilent_HUMAN_G3V2	TCONS_00022517	TCONS_00022517	chr14	 56963208	 56963267	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30329_PI429285431	6.7110276	P	6.6591845	P	1.03658836093708	0	lncRNA	32105-1_{1..307}	n335244|AY545559|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255373|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255373|-1.1488500|-0.1238821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335244|AY545559|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255373|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255373|-1.1488500|-0.1238821	chr17	 34851830	 34852136	-	NA	NA	NA	NA	MYO19	NA	chr17:34851599-34862137	inner
CUST_52118_PI429285431	7.009986	P	6.283702	P	1.6543723743213	0	lncRNA	55643-1_{1..455}	hg19_lincRNAsTranscripts_TCONS_l2_00017600 range=chr22:20291260-20295377 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017600 range=chr22:20291260-20295377 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 20291260	 20291714	+	NA	NA	NA	NA	DGCR6L	NA	chr22:20301761-20305377	inter
CUST_30608_PI429285431	5.60056	P	5.277799	P	1.25072186564391	0	lncRNA	32390-1_{1..274}	n335925|X68504|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322929|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322929|-1.1854800|-0.3825525	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335925|X68504|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322929|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322929|-1.1854800|-0.3825525	chr15	100106257	100106530	+	NA	NA	NA	NA	MEF2A	NA	chr15:100096257-100183324	inner
CUST_35611_PI429285431	7.692713	P	8.152534	P	0.727076463873185	0	lncRNA	37024-1_{1..1359}	n342748|AB126073|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5251|NULL|1.4610400|-0.0775336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342748|AB126073|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5251|NULL|1.4610400|-0.0775336	chr11	  1642187	  1643545	-	NA	NA	NA	NA	KRTAP5-5	NA	chr11:1651033-1652160	inner
CUST_29230_PI429285431	6.8592772	P	6.763708	P	1.06848688504576	0	lncRNA	30981-1_{1..607}	n326759|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007988|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007988|-0.8871240|-0.0601337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326759|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007988|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007988|-0.8871240|-0.0601337	chr1	   443495	   444101	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014608	6.644275	P	6.839317	P	0.873547464674103	0	lncRNA	XR_110506	XR_110506	XR_110506	NA	NA	LOC100507408	uncharacterized LOC100507408	ENST00000506599	THC2678812	NA	"PREDICTED: Homo sapiens hypothetical LOC100507408 (LOC100507408), miscRNA [XR_110506]"	chr1:46641217-46641158	hs|1p34.1	Agilent_HUMAN_G3V2	XR_110506	XR_110506	chr1	 46641158	 46641217	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009027	1.2850853	A	2.0726893	A	0.57930539266034	0	lncRNA	TCONS_00024643	NA	NA	NA	NA	XLOC_011936	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011936), lincRNA [TCONS_00024643]"	chr16:51096157-51096098	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00024643	TCONS_00024643	chr16	 51096098	 51096157	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_370_PI429201921	1.3188432	A	1.4024178	A	0.943716478654305	0	lncRNA	236-1_...	TC6_mann_hap4000178.hg.1	TCONS_l2_00031141-XLOC_l2_016040 // Broad TUCP // linc-RPRM-7 chr6_mann_hap4:+:4319691-4328727 // chr6_mann_hap4 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6_mann_hap4:+:4319691-4328727	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031141-XLOC_l2_016040	linc-RPRM-7	chr6_mann_hap4	  4319691	  4328727	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14454_PI429285431	4.173853	P	4.025561	P	1.10825663517531	0	lncRNA	16117-1_{1..250}	lnc-MGAT5B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MGAT5B-1:1	chr17	 74830936	 74831185	+	lnc-MGAT5B-1	lnc-MGAT5B-1:1	XLOC_012314	linc-MGAT5B-1	NA	NA	NA	inter
CUST_17789_PI429285431	0.89701706	A	0.8961339	A	1.00061234727207	0	lncRNA	19521-1_{1..3000}	lnc-CRIPAK-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRIPAK-1:2	chr4	  1548720	  1551719	+	lnc-CRIPAK-1	lnc-CRIPAK-1:2	XLOC_003422	linc-TACC3	NA	NA	NA	inter
CUST_35025_PI429285431	0.90820384	A	0.91860497	A	0.992816412268924	0	lncRNA	36438-1_{1..2554}	n341964|BC042465|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4445|NULL|-1.2858800|-0.3612623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341964|BC042465|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4445|NULL|-1.2858800|-0.3612623	chr12	 70107414	 70109967	-	NA	NA	NA	NA	RAB3IP	NA	chr12:70132631-70142348	inter
LNCA_21_P0011064	1.6311517	A	0.9684251	A	1.58307170103356	0	lncRNA	TCONS_l2_00005881	NA	NA	NA	NA	XLOC_l2_003139	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003139), lincRNA [TCONS_l2_00005881]"	chr12:108308752-108308811	hs|12q23.3	Agilent_HUMAN_G3V2	TCONS_l2_00005881	TCONS_l2_00005881	chr12	108308752	108308811	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15641_PI429285431	0.9421271	A	1.0338433	A	0.938405776996988	0	lncRNA	17332-1_{1..363}	lnc-EIF2S3L.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2S3L.1-2:1	chr12	 10727423	 10727785	+	lnc-EIF2S3L.1-2	lnc-EIF2S3L.1-2:1	XLOC_009662	linc-PRH2-2	NA	NA	NA	inter
LNCA_21_P0008123	0.92249787	A	0.92104125	A	1.00101016191636	0	lncRNA	TCONS_00021911	NA	NA	NA	NA	XLOC_010504	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010504), lincRNA [TCONS_00021911]"	chr13:112752747-112762043	hs|13q34	Agilent_HUMAN_G3V2	TCONS_00021911	TCONS_00021911	chr13	112752747	112762043	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19862_PI429285431	1.3950444	A	1.9612901	A	0.675372012389875	0	lncRNA	21519-1_{1..326}	lnc-DERL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DERL1-2:1	chr8	123997744	123998069	-	lnc-DERL1-2	lnc-DERL1-2:1	ENSG00000259631.1	RP11-557C18.4	NA	NA	NA	inter
CUST_41004_PI429285431	0.89959896	A	0.90613025	A	0.995483086826612	0	lncRNA	41667-1_{1..2177}	n411546|NR_040017|lncRNA|Homosapiens||RefGeneNoncode|NR_040017||-1.0755700|-0.2620943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n411546|NR_040017|lncRNA|Homosapiens||RefGeneNoncode|NR_040017||-1.0755700|-0.2620943	chr17	 74136636	 74138812	+	NA	NA	NA	NA	RNF157	"hg19_refFlat_RNF157:range=chr17:74141316-742363215'pad=0,hg19_refFlat_RNF157:range=chr17:74141316-742363215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr17:74138534-74160729"	NA	inner
CUST_38868_PI429285431	4.656416	P	4.084851	P	1.48613481894974	0	lncRNA	39857-2_{3001..6000}	n384750|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003lqp.2||1.0828400|-0.2094365	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,UCSC,"	>n384750|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003lqp.2||1.0828400|-0.2094365	chr5	148789439	148792438	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.01;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_C22orf39:range=chr22:19429167-194353225'pad=0,hg19_refFlat_C22orf39:range=chr22:19429167-194353225'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60"	NA	inter
CUST_16523_PI429285431	2.4383342	A	1.5215555	A	1.88789522528709	0	lncRNA	18222-2_{3001..3322}	lnc-COL20A1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL20A1-3:2	chr20	 62036322	 62036643	+	lnc-COL20A1-3	lnc-COL20A1-3:2	XLOC_013612	linc-PPDPF-3	KCNQ2	NA	chr20:62037542-62044595	inter
CUST_13286_PI429285431	3.723107	P	4.704005	P	0.506664270490137	0	lncRNA	14919-1_{1..615}	lnc-QSOX2-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-QSOX2-1:8	chr9	139166729	139167343	-	lnc-QSOX2-1	lnc-QSOX2-1:8	XLOC_007895	linc-QSOX2	NA	NA	NA	inter
CUST_35671_PI429285431	1.233305	A	1.9921752	A	0.590958939949131	0	lncRNA	37092-2_{3001..6000}	n342831|BX649107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5334|NULL|-0.8883230|-0.2424715	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342831|BX649107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5334|NULL|-0.8883230|-0.2424715	chr13	112970780	112973779	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16445_PI429285431	2.0035958	A	3.5119624	P	0.351508967473643	0	lncRNA	18144-1_{1..406}	lnc-FAM113B-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM113B-4:4	chr12	 47813705	 47814110	+	lnc-FAM113B-4	lnc-FAM113B-4:4	XLOC_009728	linc-SLC48A1-3	NA	NA	NA	inter
CUST_44172_PI429285431	1.3457762	A	1.665774	A	0.801071099161073	0	lncRNA	48830-1_{1..564}	"gi|410170459|ref|XR_171083.1| PREDICTED: Homo sapiens uncharacterized LOC101059928, transcript variant 1 (LOC101059928), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170459|ref|XR_171083.1| PREDICTED: Homo sapiens uncharacterized LOC101059928, transcript variant 1 (LOC101059928), misc_RNA"	NA	NA	NA	NA	NA	XR_171083.1	NA	NA	NA	NA	NA	Unknown
CUST_32685_PI429285431	2.0909915	A	2.322342	A	0.851837117735502	0	lncRNA	34334-1_{1..3000}	n339315|BC012990|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1747|NULL|1.7321400|-0.1159444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339315|BC012990|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1747|NULL|1.7321400|-0.1159444	chr16	 85625871	 85628870	+	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00"	NA	inter
CUST_21159_PI429285431	0.9159803	A	0.9182594	A	0.998421495411749	0	lncRNA	22782-1_{1..504}	lnc-GFAP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GFAP-1:1	chr17	 42981810	 42982313	-	lnc-GFAP-1	lnc-GFAP-1:1	ENSG00000224911.1	AC015936.3	GFAP	NA	chr17:42982994-42991914	inter
CUST_31552_PI429285431	1.1578544	A	0.90344894	A	1.19284406624504	0	lncRNA	33310-1_{1..3000}	n338042|AK057683|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|429|NULL|-1.2059300|-0.3924126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338042|AK057683|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|429|NULL|-1.2059300|-0.3924126	chr1	 88270968	 88273967	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14227_PI429285431	0.91443294	A	0.9046594	A	1.0067975005376	0	lncRNA	15884-1_{1..345}	lnc-SORCS3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SORCS3-2:1	chr10	106357127	106357471	+	lnc-SORCS3-2	lnc-SORCS3-2:1	XLOC_008600	linc-SORCS3-2	NA	NA	NA	inter
CUST_33481_PI429285431	0.8954179	A	0.89249885	A	1.00202537959338	0	lncRNA	35054-1_{1..1985}	n340220|BC035172|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2681|NULL|-0.9544300|-0.3352515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340220|BC035172|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2681|NULL|-0.9544300|-0.3352515	chr4	130645325	130647309	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00318938	0.91580874	A	0.90878224	A	1.00488227833419	0	lncRNA	TCONS_00005491	NA	NA	NA	NA	XLOC_002569	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002569), lincRNA [TCONS_00005491]"	chr3:6599336-6599395	hs|3p26.1	Agilent_HUMAN_G3V2	TCONS_00005491	TCONS_00005491	chr3	  6599336	  6599395	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004207	0.91542435	A	0.9081919	A	1.00502573919868	0	lncRNA	TCONS_00009845	NA	NA	NA	NA	XLOC_004257	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004257), lincRNA [TCONS_00009845]"	chr5:2960678-2960737	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00009845	TCONS_00009845	chr5	  2960678	  2960737	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40280_PI429285431	1.0903113	A	0.9182336	A	1.12667990706684	0	lncRNA	41088-2_{3001..3156}	n408226|NR_028387_5|lncRNA|Homosapiens||RefGeneNoncode|NR_028387_5||0.5363300|-0.2756010	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408226|NR_028387_5|lncRNA|Homosapiens||RefGeneNoncode|NR_028387_5||0.5363300|-0.2756010	chr6	  4736174	  4736329	-	NA	NA	NA	NA	CDYL	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80chr6:4723174-4750920"	NA	inter
CUST_28910_PI429285431	0.88716644	A	0.886903	A	1.00018261936613	0	lncRNA	30627-1_{1..1457}	n326335|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000087599|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000087599|1.7045800|-0.3383762	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326335|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000087599|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000087599|1.7045800|-0.3383762	chr1	168507367	168508823	-	NA	NA	NA	NA	XCL1	NA	chr1:168511969-168524697	inner
CUST_23941_PI429285431	0.91506714	A	1.0784926	A	0.892902490862542	0	lncRNA	25498-1_{1..601}	lnc-KL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KL-1:1	chr13	 33697405	 33698005	+	lnc-KL-1	lnc-KL-1:1	ENSG00000233226.1	STARD13-AS1	STARD13	NA	chr13:33687405-33707797	inner
LNCA_21_P0003138	8.735816	P	8.836781	P	0.932409106548464	0	lncRNA	TCONS_00006565	NA	NA	NA	NA	XLOC_003194	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003194), lincRNA [TCONS_00006565]"	chr3:102379580-102379521	hs|3q12.3	Agilent_HUMAN_G3V2	TCONS_00006565	TCONS_00006565	chr3	102379521	102379580	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9477_PI429285431	0.8908826	A	1.2107548	A	0.801140842874779	0	lncRNA	10984-1_{1..477}	lnc-REEP3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-REEP3-2:1	chr10	 66452250	 66452726	+	lnc-REEP3-2	lnc-REEP3-2:1	XLOC_008498	linc-LRRTM3-5	NA	NA	NA	inter
CUST_18173_PI429285431	5.950692	P	6.01875	P	0.95392119972484	0	lncRNA	19908-1_{1..1262}	lnc-KLF14-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KLF14-2:5	chr7	130791502	130792763	-	lnc-KLF14-2	lnc-KLF14-2:5	ENSG00000231721	AC058791.2	MKLN1	NA	chr7:130794855-130801789	inter
CUST_34757_PI429285431	1.5456072	A	1.2487867	A	1.22843412926223	0	lncRNA	36199-1_{1..1341}	n341666|BC043546|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4137|NULL|-0.8032720|-0.2924683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341666|BC043546|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4137|NULL|-0.8032720|-0.2924683	chr9	 25780053	 25781393	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009477	0.91031224	A	0.9017891	A	1.005925275871	0	lncRNA	TCONS_00026329	NA	NA	NA	NA	XLOC_012676	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012676), lincRNA [TCONS_00026329]"	chr18:49104907-49104966	hs|18q21.2	Agilent_HUMAN_G3V2	TCONS_00026329	TCONS_00026329	chr18	 49104907	 49104966	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46249_PI429285431	0.89942074	A	0.90245605	A	0.997898295112502	0	lncRNA	50488-1_{1..853}	"gi|389565502|ref|NR_047021.1| Homo sapiens long intergenic non-protein coding RNA 433 (LINC00433), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|389565502|ref|NR_047021.1| Homo sapiens long intergenic non-protein coding RNA 433 (LINC00433), non-coding RNA"	Chr13	 89193084	 89193936	+	100874168	NR_047021.1	NA	NA	NA	NA	NA	inter
CUST_25701_PI429285431	1.5662559	A	1.4277966	A	1.10072898442138	0	lncRNA	27229-1_{1..629}	lnc-PAPPA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAPPA2-2:1	chr1	175987561	175988189	+	lnc-PAPPA2-2	lnc-PAPPA2-2:1	ENSG00000228686.2	RP11-492I21.1	RFWD2	"hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50chr1:175977561-175997896"	NA	inner
CUST_16857_PI429285431	0.9022777	A	0.90636206	A	0.99717294106027	0	lncRNA	18563-1_{1..2128}	lnc-C9orf156-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf156-1:1	chr9	100662493	100664620	-	lnc-C9orf156-1	lnc-C9orf156-1:1	XLOC_007801	linc-XPA-1	C9orf156	NA	chr9:100666772-100674123	inter
CUST_14002_PI429285431	7.044585	P	7.4677343	P	0.745794829376457	0	lncRNA	15647-1_{1..968}	lnc-VPS18-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VPS18-1:2	chr15	 41199535	 41200502	+	lnc-VPS18-1	lnc-VPS18-1:2	XLOC_011223	linc-DLL4	VPS18	NA	chr15:41189535-41196173	inter
CUST_8072_PI429285431	0.9194126	A	0.9213894	A	0.998630724967164	0	lncRNA	9679-1_{1..3000}	lnc-INADL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-INADL-2:1	chr1	 61593091	 61596090	+	lnc-INADL-2	lnc-INADL-2:1	ENSG00000248141	ENST00000514954	NFIA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30chr1:61583091-61607315"	NA	inner
CUST_47565_PI429285431	0.9136525	A	1.2812448	A	0.775074933170724	0	lncRNA	51571-1_{1..3000}	"gi|298231174|ref|NR_033717.1| Homo sapiens sex comb on midleg-like 2 (Drosophila) (SCML2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298231174|ref|NR_033717.1| Homo sapiens sex comb on midleg-like 2 (Drosophila) (SCML2), transcript variant 2, non-coding RNA"	ChrX	 18257433	 18260432	-	10389	NR_033717.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20"	NA	inter
CUST_48453_PI429285431	6.1853995	P	6.0791726	P	1.0764094038633	0	lncRNA	52308-1_{1..1477}	hg19_lincRNAsTranscripts_TCONS_l2_00001761 range=chr1:212826523-212838945 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001761 range=chr1:212826523-212838945 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	212826523	212827999	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38609_PI429285431	0.9192679	A	0.92148894	A	0.998461676820043	0	lncRNA	39615-1_{1..3000}	n383732|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tpy.1||1.1919600|-0.3722569	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n383732|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tpy.1||1.1919600|-0.3722569	chr2	130783575	130786574	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00"	NA	inter
CUST_6857_PI429285431	2.5449026	A	2.9028127	A	0.780294101852022	0	lncRNA	6806-1_{1..472}	"transcript_id ""ENST00000581640.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581640.1"" | genecode_v17"	chr21	 38580804	 38581275	+	ENSG00000230366.5	ENST00000581640.1	DSCR9	DSCR9-005	TTC3	NA	chr21:38570804-38575408	inter
CUST_48987_PI429285431	14.35469	P	14.68034	P	0.797938797489099	0	lncRNA	52821-3_{6001..6288}	hg19_lincRNAsTranscripts_TCONS_l2_00019098 range=chr3:195722896-195731930 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019098 range=chr3:195722896-195731930 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	195728896	195729183	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42452_PI429285431	8.482403	P	8.3555	P	1.09194712591053	0	lncRNA	45180-1_{1..75}	ENST00000362723 ncrna:snoRNA chromosome:GRCh37:14:101438440:101438514:1 gene:ENSG00000199593 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362723 ncrna:snoRNA chromosome:GRCh37:14:101438440:101438514:1 gene:ENSG00000199593 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101438440	101438514	+	ENSG00000199593	ENST00000362723	NA	NA	NA	NA	NA	inter
CUST_46132_PI429285431	1.5959966	A	2.319512	A	0.60561993501906	0	lncRNA	50388-1_{1..3000}	"gi|300068993|ref|NR_033949.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|300068993|ref|NR_033949.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_033949.1	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60"	NA	Unknown
CUST_44608_PI429285431	9.3106365	P	8.902404	P	1.32705898783827	0	lncRNA	49182-1_{1..2015}	"gi|359338966|ref|NR_045586.1| Homo sapiens steroid receptor RNA activator 1 (SRA1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|359338966|ref|NR_045586.1| Homo sapiens steroid receptor RNA activator 1 (SRA1), transcript variant 3, non-coding RNA"	Chr5	139929652	139931666	-	10011	NR_045586.1	NA	NA	NA	NA	NA	inter
LNCA_19_P00321648	5.2443347	P	5.420421	P	0.8851008175027	0	lncRNA	ENST00000456816	NA	NA	NA	NA	XLOC_003385	NA	ENST00000456816	THC2668090	NA	"BROAD Institute lincRNA (XLOC_003385), lincRNA [TCONS_00005923]"	chr3:194014471-194014412	hs|3q29	Agilent_HUMAN_G3V2	ENST00000456816	ENST00000456816	chr3	194014412	194014471	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41067_PI429285431	1.3761948	A	2.7853732	A	0.376526053525295	0	lncRNA	41735-1_{1..97}	ENST00000385050 ncrna:miRNA chromosome:GRCh37:X:133675371:133675467:-1 gene:ENSG00000207784 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385050 ncrna:miRNA chromosome:GRCh37:X:133675371:133675467:-1 gene:ENSG00000207784 gene_biotype:miRNA transcript_biotype:miRNA	chrX	133675371	133675467	-	ENSG00000207784	ENST00000385050	NA	NA	NA	NA	NA	inter
CUST_47774_PI429285431	3.698214	P	2.325819	A	2.58900006238238	0	lncRNA	51704-1_{1..3000}	"gi|385137079|ref|NR_047617.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 47, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137079|ref|NR_047617.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 47, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047617.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0006243	0.90740573	A	0.89744246	A	1.00692991400371	0	lncRNA	TCONS_00016231	NA	NA	NA	NA	XLOC_007614	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007614), lincRNA [TCONS_00016231]"	chr9:139508075-139508134	hs|9q34.3	Agilent_HUMAN_G3V2	TCONS_00016231	TCONS_00016231	chr9	139508075	139508134	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37058_PI429285431	0.9070723	A	0.91053694	A	0.997601375859599	0	lncRNA	38190-2_{3001..5397}	n345507|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1056|NULL|-1.6319900|-0.3783258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345507|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1056|NULL|-1.6319900|-0.3783258	chr2	192559794	192562190	+	NA	NA	NA	NA	OBFC2A	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20chr2:192546794-192553248"	NA	inter
CUST_14557_PI429285431	0.90586364	A	0.8908056	A	1.01049209803126	0	lncRNA	16226-1_{1..855}	lnc-PDZD7-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDZD7-3:1	chr10	102819867	102820721	-	lnc-PDZD7-3	lnc-PDZD7-3:1	XLOC_008922	linc-PDZD7	KAZALD1	NA	chr10:102820999-102825351	inter
CUST_35983_PI429285431	3.9434383	P	3.8396366	P	1.07460145756666	0	lncRNA	37326-1_{1..3000}	n344601|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_149|NULL|-1.3539600|-0.2314070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344601|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_149|NULL|-1.3539600|-0.2314070	chr18	  5236720	  5239719	+	NA	NA	NA	NA	NA	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40"	NA	inter
CUST_46319_PI429285431	1.021777	A	0.89112544	A	1.09478802543362	0	lncRNA	50548-1_{1..2092}	"gi|223468643|ref|NR_026796.1| Homo sapiens long intergenic non-protein coding RNA 520 (LINC00520), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223468643|ref|NR_026796.1| Homo sapiens long intergenic non-protein coding RNA 520 (LINC00520), transcript variant 1, non-coding RNA"	Chr14	 56247853	 56249944	-	645687	NR_026796.1	NA	NA	NA	NA	NA	inter
CUST_43471_PI429285431	8.632513	P	9.15207	P	0.697586003980359	0	lncRNA	48272-2_{3001..3188}	"gi|379030592|ref|NR_046405.1| Homo sapiens thioredoxin domain containing 12 (endoplasmic reticulum) (TXNDC12), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379030592|ref|NR_046405.1| Homo sapiens thioredoxin domain containing 12 (endoplasmic reticulum) (TXNDC12), transcript variant 2, non-coding RNA"	Chr1	 52500769	 52500956	-	51060	NR_046405.1	NA	NA	NA	NA	NA	inter
CUST_49893_PI429285431	0.91850615	A	0.91884226	A	0.999767053437407	0	lncRNA	53642-1_{1..2712}	hg19_lincRNAsTranscripts_TCONS_l2_00026704 range=chr7:76711096-76751013 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026704 range=chr7:76711096-76751013 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 76711096	 76713807	-	NA	NA	NA	NA	CCDC146	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90chr7:76744671-76761013"	NA	inter
LNCA_21_P0014482	1.3657012	A	0.90279883	A	1.37831187675443	0	lncRNA	ENST00000436032	XR_110029	XR_110029	NA	Hs.475364	LOC100507660	NA	ENST00000436032	THC2604255	NA	"PREDICTED: Homo sapiens hypothetical LOC100507660 (LOC100507660), miscRNA [XR_110029]"	chr3:9235848-9235907	hs|3p25.3	Agilent_HUMAN_G3V2	ENST00000436032	ENST00000436032	chr3	  9235848	  9235907	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24269_PI429285431	4.1536503	P	3.975894	P	1.13112337738268	0	lncRNA	25820-1_{1..577}	lnc-CCDC113-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC113-2:1	chr16	 58192818	 58193394	+	lnc-CCDC113-2	lnc-CCDC113-2:1	ENSG00000260927.1	RP11-459F6.3	CSNK2A2	NA	chr16:58191811-58203037	inner
CUST_27926_PI429285431	0.91746217	A	1.3074337	A	0.76314466415235	0	lncRNA	29527-1_{1..1592}	n325170|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330896|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330896|-0.8503810|-0.2767778	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325170|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330896|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330896|-0.8503810|-0.2767778	chr2	113986400	113987991	+	NA	NA	NA	NA	PAX8	NA	chr2:113976400-113999358	inner
CUST_33562_PI429285431	0.91414714	A	0.90426177	A	1.00687554511743	0	lncRNA	35128-1_{1..2869}	n340310|AK123251|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2771|NULL|-1.0850900|-0.2935361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340310|AK123251|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2771|NULL|-1.0850900|-0.2935361	chr5	  6134415	  6137283	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39527_PI429285431	1.574654	A	1.6279749	A	0.963715423780515	0	lncRNA	40473-1_{1..732}	n387361|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011csb.1||1.1775600|-0.2789024	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387361|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011csb.1||1.1775600|-0.2789024	chr5	 70671611	 70672342	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22232_PI429285431	5.658724	P	4.7141747	P	1.92458754836849	0	lncRNA	23832-1_{1..477}	lnc-BHMT2-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BHMT2-1:8	chr5	 77712365	 77712841	+	lnc-BHMT2-1	lnc-BHMT2-1:8	ENSG00000085365.12	SCAMP1	SCAMP1	NA	chr5:77702365-77722412	inner
CUST_30879_PI429285431	1.4681104	A	1.0718718	A	1.31607216551752	0	lncRNA	32667-1_{1..239}	n336887|AY789463|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332365|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332365|1.2374500|-0.3577756	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336887|AY789463|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332365|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332365|1.2374500|-0.3577756	chr3	 38135072	 38135310	+	NA	NA	NA	NA	DLEC1	NA	chr3:38125072-38147432	inner
CUST_31539_PI429285431	1.4212484	A	1.3433753	A	1.0554608748181	0	lncRNA	33298-1_{1..1750}	n338027|BC064139|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|414|NULL|-1.0698900|-0.3016904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338027|BC064139|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|414|NULL|-1.0698900|-0.3016904	chr1	 85618177	 85619926	-	NA	NA	NA	NA	SYDE2	NA	chr1:85623356-85629886	inter
CUST_21884_PI429285431	0.9113633	A	0.91779417	A	0.995552380674549	0	lncRNA	23493-1_{1..1281}	lnc-NPVF-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPVF-5:3	chr7	 25702366	 25703646	-	lnc-NPVF-5	lnc-NPVF-5:3	ENSG00000223561.2	AC003090.1	NA	NA	NA	inter
CUST_9110_PI429285431	6.5589185	P	6.80633	P	0.842406515567378	0	lncRNA	10630-2_{3001..3283}	lnc-TBC1D22A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TBC1D22A-2:1	chr22	 47005405	 47005687	+	lnc-TBC1D22A-2	lnc-TBC1D22A-2:1	ENSG00000249879	AL021392.1	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20"	NA	inter
CUST_23744_PI429285431	1.1579163	A	0.9090295	A	1.18828986311313	0	lncRNA	25307-1_{1..2033}	lnc-THSD4-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THSD4-3:2	chr15	 72109893	 72111925	+	lnc-THSD4-3	lnc-THSD4-3:2	ENSG00000031544.9	NR2E3	MYO9A	NA	chr15:72118351-72120600	inner
CUST_37133_PI429285431	8.5974865	P	8.610352	P	0.991121959568243	0	lncRNA	38256-1_{1..2542}	n345574|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1123|NULL|-1.3248000|-0.2494911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345574|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1123|NULL|-1.3248000|-0.2494911	chr2	233438972	233441513	+	NA	NA	NA	NA	EIF4E2	NA	chr2:233428972-233433920	inter
CUST_37479_PI429285431	2.720159	A	2.8325582	A	0.925048427693234	0	lncRNA	38579-3_{6001..8910}	n345937|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1486|NULL|-1.3000400|-0.2079454	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345937|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1486|NULL|-1.3000400|-0.2079454	chr16	 50545773	 50548682	+	NA	NA	NA	NA	NKD1	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70chr16:50582241-50590961"	NA	inter
CUST_26507_PI429285431	1.096532	A	0.905325	A	1.14171851082122	0	lncRNA	28015-1_{1..1048}	lnc-RASL11B-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-RASL11B-5:1	chr4	 53527059	 53528106	+	lnc-RASL11B-5	lnc-RASL11B-5:1	ENSG00000248866.1	USP46-AS1	USP46	NA	chr4:53517059-53525502	inter
CUST_19894_PI429285431	0.9082992	A	0.9015682	A	1.00467647440733	0	lncRNA	21549-1_{1..548}	lnc-DENND1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DENND1B-1:1	chr1	197416559	197417106	-	lnc-DENND1B-1	lnc-DENND1B-1:1	ENSG00000230260.1	RP11-75C23.1	CRB1	"hg19_refFlat_CRB1:range=chr1:197237543-1974470095'pad=0,hg19_refFlat_CRB1:range=chr1:197237543-1974470095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_CRB1:range=chr1:197297689-1974470095'pad=0,hg19_refFlat_CRB1:range=chr1:197297689-1974470095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50chr1:197406559-197426599"	NA	inter
CUST_31601_PI429285431	1.4035017	A	1.3485777	A	1.03880437848746	0	lncRNA	33357-1_{1..2332}	n338111|AK130480|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|499|NULL|-0.6573440|-0.3412223	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338111|AK130480|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|499|NULL|-0.6573440|-0.3412223	chr1	108743034	108745365	+	NA	NA	NA	NA	SLC25A24	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10chr1:108733034-108742974"	NA	inter
CUST_1982_PI429285431	0.9000124	A	1.1366031	A	0.848748661910631	0	lncRNA	1973-1_{1..314}	"transcript_id ""ENST00000503325.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503325.1"" | genecode_v17"	chr4	174903770	174904083	-	ENSG00000251216.1	ENST00000503325.1	RP11-161D15.3	RP11-161D15.3-002	NA	NA	NA	inter
CUST_24219_PI429285431	0.9045861	A	0.9319142	A	0.981235884251607	0	lncRNA	25770-1_{1..396}	lnc-METTL13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-METTL13-1:1	chr1	171833539	171833934	+	lnc-METTL13-1	lnc-METTL13-1:1	ENSG00000233540.1	DNM3-IT1	DNM3	NA	chr1:171823539-171843827	inner
CUST_20106_PI429285431	1.1376467	A	2.4476204	A	0.403328232125294	0	lncRNA	21754-1_{1..3000}	lnc-GAMT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GAMT-1:1	chr19	  1394803	  1397802	-	lnc-GAMT-1	lnc-GAMT-1:1	ENSG00000248015.1	AC005329.7	NDUFS7	"hg19_refFlat_NDUFS7:range=chr19:1383926-13954875'pad=0,hg19_refFlat_NDUFS7:range=chr19:1383926-13954875'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.50;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40chr19:1384803-1395588"	NA	inner
CUST_47975_PI429285431	0.911702	A	0.9178026	A	0.99578031430836	0	lncRNA	51865-2_{3001..4337}	"gi|410172808|ref|XR_171995.1| PREDICTED: Homo sapiens uncharacterized LOC100996347 (LOC100996347), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172808|ref|XR_171995.1| PREDICTED: Homo sapiens uncharacterized LOC100996347 (LOC100996347), misc_RNA"	NA	NA	NA	NA	NA	XR_171995.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70"	NA	Unknown
CUST_35640_PI429285431	5.5067377	P	5.583637	P	0.948093139645456	0	lncRNA	37055-1_{1..1500}	n342785|BC035670|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5288|NULL|-1.1339100|-0.3292047	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342785|BC035670|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5288|NULL|-1.1339100|-0.3292047	chr11	116644514	116646013	-	NA	NA	NA	NA	ZNF259	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr11:116649276-116655976"	NA	inter
CUST_17718_PI429285431	4.487746	P	4.6262274	P	0.908474924997367	0	lncRNA	19448-1_{1..230}	lnc-MAF-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAF-2:2	chr16	 79804344	 79804573	-	lnc-MAF-2	lnc-MAF-2:2	XLOC_012017	linc-MAF-4	NA	NA	NA	inter
CUST_26508_PI429285431	0.9119198	A	0.8956559	A	1.01133705926582	0	lncRNA	28016-1_{1..478}	lnc-NMNAT3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NMNAT3-3:1	chr3	140179094	140179571	-	lnc-NMNAT3-3	lnc-NMNAT3-3:1	ENSG00000249290.1	RP11-68L1.2	CLSTN2	NA	chr3:140169094-140189193	inner
CUST_50942_PI429285431	1.1462513	A	1.3860829	A	0.84684415531199	0	lncRNA	54584-1_{1..564}	hg19_lincRNAsTranscripts_TCONS_l2_00006646 range=chr12:54470622-54475687 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006646 range=chr12:54470622-54475687 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 54470622	 54471185	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36058_PI429285431	0.89968807	A	0.9878949	A	0.94069123693454	0	lncRNA	37371-3_{6001..9000}	n344653|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_201|NULL|-1.3065500|-0.2698776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n344653|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_201|NULL|-1.3065500|-0.2698776	chr1	 94170463	 94173462	-	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40"	NA	inner
CUST_23142_PI429285431	0.89568615	A	0.8947885	A	1.00062239717542	0	lncRNA	24713-1_{1..2880}	lnc-SIX2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SIX2-3:1	chr2	 45165962	 45168841	-	lnc-SIX2-3	lnc-SIX2-3:1	ENSG00000259439.1	RP11-89K21.1	SIX3	"hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0,hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40chr2:45169037-45173216"	NA	inter
CUST_3192_PI429285431	1.3723958	A	2.0546372	A	0.623196311635572	0	lncRNA	3171-1_{1..651}	"transcript_id ""ENST00000519660.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519660.1"" | genecode_v17"	chr8	 77816827	 77817477	+	ENSG00000253416.1	ENST00000519660.1	RP11-48D4.2	RP11-48D4.2-001	NA	NA	NA	inter
CUST_4190_PI429285431	0.9247416	A	0.92341506	A	1.00091991031909	0	lncRNA	4149-1_{1..681}	"transcript_id ""ENST00000534841.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534841.1"" | genecode_v17"	chr12	 23328576	 23329256	+	ENSG00000256321.1	ENST00000534841.1	RP11-153K16.1	RP11-153K16.1-003	NA	NA	NA	inter
CUST_48250_PI429285431	1.8623664	A	2.501746	A	0.641988962987926	0	lncRNA	52112-1_{1..1104}	hg19_lincRNAsTranscripts_TCONS_l2_00000004 range=chr1:714143-740628 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000004 range=chr1:714143-740628 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	   714143	   715246	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44084_PI429285431	6.6496215	P	6.0056014	P	1.56267753182003	0	lncRNA	48752-1_{1..1997}	"gi|210147518|ref|NR_024322.1| Homo sapiens male-specific lethal 3 homolog (Drosophila) pseudogene 1 (MSL3P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|210147518|ref|NR_024322.1| Homo sapiens male-specific lethal 3 homolog (Drosophila) pseudogene 1 (MSL3P1), non-coding RNA"	Chr2	234774083	234776079	-	151507	NR_024322.1	NA	NA	NA	NA	NA	inter
CUST_8617_PI429285431	0.9697988	A	0.9807402	A	0.992444685406937	0	lncRNA	10170-1_{1..2893}	lnc-DHX37-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-1:1	chr12	125512492	125515384	-	lnc-DHX37-1	lnc-DHX37-1:1	ENSG00000245605	XLOC_010236	BRI3BP	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60chr12:125502492-125510349"	NA	inter
CUST_51424_PI429285431	3.0542388	P	2.6704457	P	1.30476781471098	0	lncRNA	55003-1_{1..1114}	hg19_lincRNAsTranscripts_TCONS_l2_00010003 range=chr16:11565150-11572515 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010003 range=chr16:11565150-11572515 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 11565150	 11566263	-	NA	NA	NA	NA	LOC400499	NA	chr16:11555150-11582515	inter
CUST_31112_PI429285431	4.973604	P	4.807166	P	1.12228415256022	0	lncRNA	32906-1_{1..881}	n337402|DQ656057|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393170|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393170|0.5192090|-0.1830292	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337402|DQ656057|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393170|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393170|0.5192090|-0.1830292	chr9	131710296	131711176	+	NA	NA	NA	NA	NUP188	NA	chr9:131709977-131729290	inner
CUST_39211_PI429285431	2.7696877	A	3.6246636	P	0.552874562267996	0	lncRNA	40186-1_{1..346}	n386004|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009yfv.1||-1.1367600|-0.1522210	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386004|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009yfv.1||-1.1367600|-0.1522210	chr11	 10352116	 10352461	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44195_PI429285431	0.9028761	A	0.9166588	A	0.990492049484555	0	lncRNA	48852-1_{1..599}	"gi|397139032|ref|XR_109997.2| PREDICTED: Homo sapiens uncharacterized LOC100506865 (LOC100506865), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139032|ref|XR_109997.2| PREDICTED: Homo sapiens uncharacterized LOC100506865 (LOC100506865), misc_RNA"	NA	NA	NA	NA	NA	XR_109997.2	NA	NA	NA	NA	NA	Unknown
CUST_13110_PI429285431	1.7817236	A	0.90316445	A	1.83853819710672	0	lncRNA	14734-1_{1..826}	lnc-UBE2H-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBE2H-2:1	chr7	129251159	129251984	-	lnc-UBE2H-2	lnc-UBE2H-2:1	XLOC_006604	linc-TNPO3-3	NRF1	NA	chr7:129251555-129261436	inter
CUST_8120_PI429285431	0.8955265	A	0.90245867	A	0.99520651152191	0	lncRNA	9724-1_{1..1406}	lnc-C10orf40-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf40-1:1	chr10	 61813987	 61815392	-	lnc-C10orf40-1	lnc-C10orf40-1:1	ENSG00000250653	ENST00000510675	ANK3	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50chr10:61803987-61824831"	NA	inner
CUST_44791_PI429285431	5.660495	P	6.094446	P	0.740231789962406	0	lncRNA	49328-1_{1..394}	"gi|397139149|ref|XR_110206.2| PREDICTED: Homo sapiens uncharacterized LOC100506165 (LOC100506165), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139149|ref|XR_110206.2| PREDICTED: Homo sapiens uncharacterized LOC100506165 (LOC100506165), misc_RNA"	NA	NA	NA	NA	NA	XR_110206.2	NA	NA	NA	NA	NA	Unknown
CUST_21839_PI429285431	1.9561648	A	2.2104352	A	0.838411028851879	0	lncRNA	23449-1_{1..241}	lnc-PAX6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAX6-3:1	chr11	 32074693	 32074933	-	lnc-PAX6-3	lnc-PAX6-3:1	ENSG00000254836.1	RP1-17K7.3	NA	NA	NA	inter
CUST_22799_PI429285431	1.1919942	A	2.0310187	A	0.559021432041149	0	lncRNA	24379-1_{1..939}	lnc-IL32-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL32-1:1	chr16	  3104785	  3105723	+	lnc-IL32-1	lnc-IL32-1:1	ENSG00000262019.1	RP11-473M20.8	IL32	NA	chr16:3115313-3115381	inner
CUST_31613_PI429285431	2.3268628	A	2.6506732	A	0.798956909030494	0	lncRNA	33369-1_{1..2365}	n338127|BC042100|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|515|NULL|-0.4179380|-0.1889269	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338127|BC042100|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|515|NULL|-0.4179380|-0.1889269	chr1	111030301	111032665	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25353_PI429285431	1.7063706	A	1.6444021	A	1.04388913475536	0	lncRNA	26883-1_{1..564}	lnc-CDC42BPB-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDC42BPB-1:3	chr14	103240978	103241541	-	lnc-CDC42BPB-1	lnc-CDC42BPB-1:3	ENSG00000259508.1	RP11-661D19.3	TRAF3	NA	chr14:103243816-103251102	inter
CUST_7779_PI429285431	3.8999584	P	4.0303807	P	0.913563996238896	0	lncRNA	9404-1_{1..1094}	lnc-C12orf49-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C12orf49-1:1	chr12	116972209	116973302	-	lnc-C12orf49-1	lnc-C12orf49-1:1	ENSG00000247019	XLOC_010211	NA	NA	NA	inter
CUST_18898_PI429285431	1.2849634	A	1.6599488	A	0.77111321629078	0	lncRNA	20590-1_{1..682}	lnc-MEIS1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MEIS1-3:1	chr2	 66922335	 66923016	+	lnc-MEIS1-3	lnc-MEIS1-3:1	ENSG00000232046	AC007392.3	NA	NA	NA	inter
CUST_10398_PI429285431	5.199311	P	5.3703213	P	0.88822045444448	0	lncRNA	11925-2_{3001..4392}	lnc-FOXA2-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXA2-8:2	chr20	 22265992	 22267383	-	lnc-FOXA2-8	lnc-FOXA2-8:2	XLOC_013679	linc-NKX2-2-1	NA	"hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60"	NA	inter
CUST_45357_PI429285431	0.9124737	A	1.2467245	A	0.793195940981185	0	lncRNA	49794-1_{1..843}	"gi|397139319|ref|XR_159122.1| PREDICTED: Homo sapiens uncharacterized LOC100132004 (LOC100132004), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139319|ref|XR_159122.1| PREDICTED: Homo sapiens uncharacterized LOC100132004 (LOC100132004), misc_RNA"	NA	NA	NA	NA	NA	XR_159122.1	NA	NA	NA	NA	NA	Unknown
CUST_9667_PI429285431	5.3013687	P	5.215497	P	1.06132881994955	0	lncRNA	11184-1_{1..416}	lnc-ZNF792-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF792-1:3	chr19	 35395865	 35396280	-	lnc-ZNF792-1	lnc-ZNF792-1:3	XLOC_013310	linc-ZNF599-1	NA	NA	NA	inter
CUST_45431_PI429285431	4.0449038	P	4.402582	P	0.780419537055521	0	lncRNA	49849-1_{1..2170}	"gi|310120405|ref|XR_108997.1| PREDICTED: Homo sapiens erythrocyte transmembrane protein (LOC51145), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120405|ref|XR_108997.1| PREDICTED: Homo sapiens erythrocyte transmembrane protein (LOC51145), misc_RNA"	Chr9	128506656	128508825	-	51145	XR_108997.1	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20"	NA	inter
CUST_47913_PI429285431	7.0465465	P	6.842489	P	1.15193355285537	0	lncRNA	51804-1_{1..479}	"gi|410172029|ref|XR_171546.1| PREDICTED: Homo sapiens uncharacterized LOC101060495 (LOC101060495), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172029|ref|XR_171546.1| PREDICTED: Homo sapiens uncharacterized LOC101060495 (LOC101060495), misc_RNA"	NA	NA	NA	NA	NA	XR_171546.1	NA	NA	NA	NA	NA	Unknown
CUST_8507_PI429285431	2.173635	A	1.2490518	A	1.89813578414282	0	lncRNA	10070-1_{1..292}	lnc-LARP1B-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LARP1B-1:5	chr4	129391988	129392279	+	lnc-LARP1B-1	lnc-LARP1B-1:5	ENSG00000251432	RP11-420A23.1	NA	NA	NA	inter
CUST_12466_PI429285431	0.91526216	A	0.9222907	A	0.995140035346692	0	lncRNA	14078-1_{1..1437}	lnc-ATOH8-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATOH8-2:2	chr2	 86141404	 86142840	+	lnc-ATOH8-2	lnc-ATOH8-2:2	XLOC_001558	linc-PTCD3-2	NA	NA	NA	inter
LNCA_21_P0005736	0.9215937	A	0.91875863	A	1.00196705289243	0	lncRNA	TCONS_00014799	NA	NA	NA	NA	XLOC_006874	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006874), lincRNA [TCONS_00014799]"	chr8:96996741-96996800	hs|8q22.1	Agilent_HUMAN_G3V2	TCONS_00014799	TCONS_00014799	chr8	 96996741	 96996800	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2018_PI429285431	5.11459	P	5.788942	P	0.62661360548787	0	lncRNA	2009-1_{1..567}	"transcript_id ""ENST00000505488.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505488.1"" | genecode_v17"	chr4	188534919	188535485	+	ENSG00000249642.1	ENST00000505488.1	RP11-565A3.1	RP11-565A3.1-002	NA	"hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0,hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20"	NA	inter
CUST_31830_PI429285431	8.00543	P	7.535619	P	1.38492802398364	0	lncRNA	33565-1_{1..892}	n338376|U06700|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|771|NULL|-1.2693200|-0.1865736	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338376|U06700|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|771|NULL|-1.2693200|-0.1865736	chr19	 17733255	 17734146	+	NA	NA	NA	NA	UNC13A	NA	chr19:17723255-17744147	inner
CUST_50808_PI429285431	0.9442613	A	0.9309439	A	1.00927365458566	0	lncRNA	54459-1_{1..749}	hg19_lincRNAsTranscripts_TCONS_l2_00004513 range=chr11:49327437-49391952 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004513 range=chr11:49327437-49391952 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 49327437	 49328185	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31658_PI429285431	1.3150502	A	0.9153225	A	1.31925888510357	0	lncRNA	33409-1_{1..1642}	n338182|CR625021|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|573|NULL|-0.3557780|-0.2228246	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338182|CR625021|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|573|NULL|-0.3557780|-0.2228246	chr22	 47655115	 47656756	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45874_PI429285431	4.4509654	P	2.2642322	A	4.55273409373471	0	lncRNA	50200-1_{1..3000}	"gi|281182595|ref|NR_033149.1| Homo sapiens transmembrane protein 135 (TMEM135), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|281182595|ref|NR_033149.1| Homo sapiens transmembrane protein 135 (TMEM135), transcript variant 3, non-coding RNA"	Chr11	 86748886	 86751885	+	65084	NR_033149.1	NA	NA	NA	NA	NA	inter
CUST_17917_PI429285431	1.3164409	A	1.4682208	A	0.900139246087259	0	lncRNA	19649-1_{1..576}	lnc-DERA-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DERA-1:2	chr12	 16599971	 16600546	+	lnc-DERA-1	lnc-DERA-1:2	XLOC_009677	linc-PIK3C2G-2	NA	NA	NA	inter
CUST_40908_PI429285431	4.3935914	P	4.764747	P	0.773162944473011	0	lncRNA	41594-1_{1..445}	n410751|NR_038203|lncRNA|Homosapiens||RefGeneNoncode|NR_038203||-0.9751840|-0.1776202	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410751|NR_038203|lncRNA|Homosapiens||RefGeneNoncode|NR_038203||-0.9751840|-0.1776202	chr8	 96281063	 96281507	+	NA	NA	NA	NA	C8orf37	NA	chr8:96271063-96281462	inter
LNCA_21_P0001042	0.91716087	A	0.91077536	A	1.00443590789328	0	lncRNA	ENST00000434983	NA	NA	NA	NA	XLOC_000506	NA	ENST00000434983	NA	NA	"BROAD Institute lincRNA (XLOC_000506), lincRNA [TCONS_00000359]"	chr1:191197535-191197594	hs|1q31.2	Agilent_HUMAN_G3V2	ENST00000434983	ENST00000434983	chr1	191197535	191197594	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6058_PI429285431	0.9597024	A	0.8942544	A	1.04640983092447	0	lncRNA	5984-1_{1..547}	"transcript_id ""ENST00000584896.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584896.1"" | genecode_v17"	chr18	  5159331	  5159877	+	ENSG00000266153.1	ENST00000584896.1	RP11-190I17.2	RP11-190I17.2-001	C18orf42	NA	chr18:5149331-5181025	inner
CUST_22291_PI429285431	0.89546585	A	0.8940072	A	1.00101157042751	0	lncRNA	23891-1_{1..526}	lnc-STT3B-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STT3B-1:8	chr3	 31762884	 31763409	+	lnc-STT3B-1	lnc-STT3B-1:8	ENSG00000232490.2	OSBPL10-AS1	OSBPL10	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90chr3:31752884-31773069"	NA	inner
LNCA_21_P0007099	1.6638219	A	0.90847975	A	1.68803187895214	0	lncRNA	TCONS_00018899	NA	NA	NA	NA	XLOC_008764	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008764), lincRNA [TCONS_00018899]"	chr10:30280874-30280815	hs|10p11.23	Agilent_HUMAN_G3V2	TCONS_00018899	TCONS_00018899	chr10	 30280815	 30280874	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8166_PI429285431	0.9077495	A	0.8996189	A	1.00565161291221	0	lncRNA	9768-1_{1..1533}	lnc-CTD-2368P22.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2368P22.1.1-2:1	chr19	 58451136	 58452668	+	lnc-CTD-2368P22.1.1-2	lnc-CTD-2368P22.1.1-2:1	ENSG00000244835	ENST00000501768	ZNF256	"hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.96;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-24.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.12;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20chr19:58452201-58459077"	NA	inter
CUST_30444_PI429285431	9.327775	P	9.474375	P	0.9033769447055	0	lncRNA	32224-1_{1..1023}	n335581|CR592208|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000271403|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000271403|11.1073000|-0.0591471	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335581|CR592208|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000271403|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000271403|11.1073000|-0.0591471	chr6	  3154103	  3155125	-	NA	NA	NA	NA	BPHL	NA	chr6:3144103-3153432	inner
CUST_36228_PI429285431	0.9279051	A	1.1983126	A	0.829085331388034	0	lncRNA	37478-2_{3001..3178}	n344769|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_318|NULL|-1.3497200|-0.3547986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344769|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_318|NULL|-1.3497200|-0.3547986	chr1	 95147980	 95148157	-	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80"	NA	inter
CUST_30044_PI429285431	3.4150348	P	3.0145278	A	1.31997170114839	0	lncRNA	31813-1_{1..304}	n334544|U50573|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220178|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220178|1.0260400|-0.2122859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334544|U50573|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220178|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220178|1.0260400|-0.2122859	chr8	125601875	125602178	-	NA	NA	NA	NA	MTSS1	NA	chr8:125591875-125726441	inner
LNCA_21_P0002120	5.6456814	P	6.1090894	P	0.72527096534534	0	lncRNA	ENST00000458254	NA	NA	NA	NA	XLOC_002402	NA	ENST00000458254	NA	NA	"BROAD Institute lincRNA (XLOC_002402), lincRNA [TCONS_00003442]"	chr2:176769168-176769109	hs|2q31.1	Agilent_HUMAN_G3V2	ENST00000458254	ENST00000458254	chr2	176769109	176769168	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014088	9.492567	P	9.102535	P	1.3104224696365	0	lncRNA	XR_108395	XR_108395	XR_108395	NA	Hs.639379	LOC100506439	uncharacterized LOC100506439	ENST00000430048	THC2505714	NA	"PREDICTED: Homo sapiens hypothetical LOC100506439 (LOC100506439), miscRNA [XR_108395]"	chr2:11861817-11861758	hs|2p25.1	Agilent_HUMAN_G3V2	XR_108395	XR_108395	chr2	 11861758	 11861817	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12266_PI429285431	0.91009647	A	0.9271295	A	0.988263025304294	0	lncRNA	13874-1_{1..588}	lnc-SUMF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUMF2-1:1	chr7	 56186564	 56187151	+	lnc-SUMF2-1	lnc-SUMF2-1:1	XLOC_006107	linc-ZNF716-8	LOC389493	NA	chr7:56182374-56184090	inter
CUST_50313_PI429285431	0.9050323	A	0.9052347	A	0.999859716851256	0	lncRNA	54032-1_{1..2871}	hg19_lincRNAsTranscripts_TCONS_l2_00029822 range=chr9:107032509-107040107 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029822 range=chr9:107032509-107040107 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	107032509	107035379	+	NA	NA	NA	NA	OR13F1	NA	chr9:107037603-107050107	inter
CUST_14492_PI429285431	5.0376015	P	5.0346694	P	1.0020344435258	0	lncRNA	16159-1_{1..260}	lnc-ADRB1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADRB1-2:1	chr10	115777811	115778070	+	lnc-ADRB1-2	lnc-ADRB1-2:1	XLOC_008624	linc-ADRB1-2	NA	NA	NA	inter
CUST_48350_PI429285431	0.89639235	A	0.89472044	A	1.0011595514632	0	lncRNA	52207-1_{1..889}	hg19_lincRNAsTranscripts_TCONS_l2_00001280 range=chr1:65466856-65468107 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001280 range=chr1:65466856-65468107 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 65466856	 65467744	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21122_PI429285431	0.9033479	A	0.9079763	A	0.996796978243702	0	lncRNA	22748-1_{1..487}	lnc-C16orf61-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf61-1:3	chr16	 81058084	 81058570	-	lnc-C16orf61-1	lnc-C16orf61-1:3	ENSG00000260213.1	RP11-303E16.3	CENPN	"hg19_refFlat_CENPN:range=chr16:81045545-810564435'pad=0,hg19_refFlat_CENPN:range=chr16:81045545-810564435'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_CENPN:range=chr16:81045545-810662995'pad=0,hg19_refFlat_CENPN:range=chr16:81045545-810662995'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_CENPN:range=chr16:81045545-810622565'pad=0,hg19_refFlat_CENPN:range=chr16:81045545-810622565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00chr16:81048084-81066712"	NA	inner
CUST_2098_PI429285431	0.9041947	A	0.9059645	A	0.998774020247813	0	lncRNA	2089-1_{1..582}	"transcript_id ""ENST00000504998.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504998.1"" | genecode_v17"	chr5	 17444119	 17444700	+	ENSG00000249662.1	ENST00000504998.1	RP11-321E2.4	RP11-321E2.4-001	NA	NA	NA	inter
CUST_15892_PI429285431	0.9255667	A	1.1763136	A	0.840461186071944	0	lncRNA	17584-1_{1..598}	lnc-DYDC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DYDC1-1:1	chr10	 82295336	 82295933	-	lnc-DYDC1-1	lnc-DYDC1-1:1	XLOC_008873	linc-DYDC1-5	SH2D4B	NA	chr10:82297658-82305698	inter
CUST_31312_PI429285431	0.89205074	A	0.89032334	A	1.00119805954033	0	lncRNA	33094-1_{1..1504}	n337777|BC037892|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|159|NULL|-0.9032940|-0.3796475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337777|BC037892|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|159|NULL|-0.9032940|-0.3796475	chr15	 56835153	 56836656	-	NA	NA	NA	NA	ZNF280D	NA	chr15:56922374-56931786	inter
CUST_106_PI429201921	7.7649336	P	7.6819496	P	1.05920658764178	0	lncRNA	108-2_{3001..3128}	TC15002682.hg.1	TCONS_l2_00009263-XLOC_l2_005024 // Broad TUCP // linc-SEC11A-2 chr15:-:85798750-85801879 // chr15 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr15:-:85798750-85801879	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00009263-XLOC_l2_005024	linc-SEC11A-2	chr15	 85798750	 85801879	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7747_PI429285431	1.6211113	A	1.6695398	A	0.966989078082037	0	lncRNA	9375-1_{1..393}	lnc-ZMAT3-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZMAT3-2:5	chr3	178519581	178519973	-	lnc-ZMAT3-2	lnc-ZMAT3-2:5	ENSG00000237978	RP11-385J1.2	KCNMB2	NA	chr3:178509581-178529724	inner
LNCA_21_P0005822	8.964192	P	9.17757	P	0.862515327609119	0	lncRNA	TCONS_00014980	NA	NA	NA	NA	XLOC_007059	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007059), lincRNA [TCONS_00014980]"	chr8:38724162-38721760	hs|8p11.22	Agilent_HUMAN_G3V2	TCONS_00014980	TCONS_00014980	chr8	 38721760	 38724162	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12075_PI429285431	3.2407057	P	3.1616771	P	1.05630656537554	0	lncRNA	13666-1_{1..1232}	lnc-NTRK3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTRK3-2:2	chr15	 87973921	 87975152	-	lnc-NTRK3-2	lnc-NTRK3-2:2	XLOC_011567	linc-KLHL25-1	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.62;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-28.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40"	NA	inter
CUST_15403_PI429285431	9.920804	P	10.27951	P	0.779863751165103	0	lncRNA	17088-1_{1..538}	lnc-RP11-723O4.6.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-723O4.6.1-1:1	chr3	128719888	128720425	-	lnc-RP11-723O4.6.1-1	lnc-RP11-723O4.6.1-1:1	XLOC_003245	linc-KIAA1257	KIAA1257	NA	chr3:128709888-128712986	inter
CUST_29913_PI429285431	1.241761	A	0.9116564	A	1.25710451531171	0	lncRNA	31677-1_{1..224}	n334037|M26317|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195047|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195047|-0.0522673|-0.1401829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334037|M26317|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195047|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195047|-0.0522673|-0.1401829	chr1	207646499	207646722	+	NA	NA	NA	NA	CR2	NA	chr1:207636499-207657169	inner
CUST_24708_PI429285431	6.8547554	P	7.1891284	P	0.793128758079526	0	lncRNA	26254-1_{1..441}	lnc-RNF24-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF24-2:1	chr20	  3869386	  3869826	-	lnc-RNF24-2	lnc-RNF24-2:1	ENSG00000229539.1	RP11-119B16.2	PANK2	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10chr20:3869486-3879515"	NA	inner
CUST_15434_PI429285431	2.553336	A	1.9899116	A	1.47777271850662	0	lncRNA	17121-1_{1..213}	lnc-DLK1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLK1-2:1	chr14	101153976	101154188	+	lnc-DLK1-2	lnc-DLK1-2:1	XLOC_010931	linc-DLK1-1	NA	NA	NA	inter
CUST_24901_PI429285431	0.90581715	A	1.2495232	A	0.788014428116872	0	lncRNA	26442-1_{1..370}	lnc-MYBBP1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYBBP1A-1:1	chr17	  4402922	  4403291	-	lnc-MYBBP1A-1	lnc-MYBBP1A-1:1	ENSG00000229782.1	AC118754.4	SPNS2	NA	chr17:4402129-4412969	inner
CUST_36009_PI429285431	1.0144798	A	0.8854912	A	1.09352681653515	0	lncRNA	37343-1_{1..1055}	n344620|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_168|NULL|-1.3471600|-0.3408175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344620|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_168|NULL|-1.3471600|-0.3408175	chr16	 65261689	 65262743	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33192_PI429285431	3.7907658	P	4.341697	P	0.682579409372362	0	lncRNA	34784-1_{1..2688}	n339886|AK125392|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2334|NULL|-1.1593800|-0.3197907	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339886|AK125392|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2334|NULL|-1.1593800|-0.3197907	chr4	 20731427	 20734114	+	NA	NA	NA	NA	KCNIP4	"hg19_refFlat_KCNIP4:range=chr4:20731705-216990605'pad=0,hg19_refFlat_KCNIP4:range=chr4:20731705-216990605'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_KCNIP4:range=chr4:20731705-208522915'pad=0,hg19_refFlat_KCNIP4:range=chr4:20731705-208522915'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_KCNIP4:range=chr4:20731705-208522675'pad=0,hg19_refFlat_KCNIP4:range=chr4:20731705-208522675'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_KCNIP4:range=chr4:20731705-208843335'pad=0,hg19_refFlat_KCNIP4:range=chr4:20731705-208843335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_KCNIP4:range=chr4:20731705-213055295'pad=0,hg19_refFlat_KCNIP4:range=chr4:20731705-213055295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50chr4:20730239-20744177"	NA	inner
CUST_15470_PI429285431	0.89306664	A	0.8875001	A	1.00386588483629	0	lncRNA	17158-1_{1..591}	lnc-C20orf196-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf196-3:5	chr20	  5483193	  5483783	+	lnc-C20orf196-3	lnc-C20orf196-3:5	XLOC_013448	linc-C20orf196-2	NA	NA	NA	inter
CUST_44183_PI429285431	10.100071	P	10.200977	P	0.932447238836039	0	lncRNA	48839-1_{1..1614}	"gi|291045309|ref|NR_033384.1| Homo sapiens pyruvate dehydrogenase (lipoamide) beta (PDHB), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|291045309|ref|NR_033384.1| Homo sapiens pyruvate dehydrogenase (lipoamide) beta (PDHB), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_033384.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001998	0.907905	A	0.89798295	A	1.00690114488969	0	lncRNA	ENST00000425763	NA	NA	NA	NA	XLOC_001957	NA	ENST00000425763	NA	NA	"BROAD Institute lincRNA (XLOC_001957), lincRNA [TCONS_00003169]"	chr2:5690006-5689947	hs|2p25.2	Agilent_HUMAN_G3V2	ENST00000425763	ENST00000425763	chr2	  5689947	  5690006	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50718_PI429285431	3.2385402	P	3.735465	P	0.708615633646105	0	lncRNA	54387-1_{1..1495}	hg19_lincRNAsTranscripts_TCONS_l2_00003699 range=chr10:89155885-89184572 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003699 range=chr10:89155885-89184572 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 89155885	 89157379	-	NA	NA	NA	NA	NA	"hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90"	NA	inter
CUST_9363_PI429285431	1.4464537	A	1.7262038	A	0.82373368998483	0	lncRNA	10866-2_{3001..6000}	lnc-POTEJ-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POTEJ-1:1	chr2	131440298	131443297	+	lnc-POTEJ-1	lnc-POTEJ-1:1	XLOC_001671	linc-GPR148-2	NA	NA	NA	inter
CUST_24682_PI429285431	9.236041	P	8.95437	P	1.21560203909169	0	lncRNA	26229-1_{1..547}	lnc-CDIPT-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDIPT-2:1	chr16	 29818552	 29819098	-	lnc-CDIPT-2	lnc-CDIPT-2:1	ENSG00000259952.1	AC009133.15	MAZ	"hg19_refFlat_MAZ:range=chr16:29818023-298210635'pad=0,hg19_refFlat_MAZ:range=chr16:29818023-298210635'pad=0 3'pad=0 strand=+ repeatMasking=none,-110.60;hg19_refFlat_MAZ:range=chr16:29818023-298215525'pad=0,hg19_refFlat_MAZ:range=chr16:29818023-298215525'pad=0 3'pad=0 strand=+ repeatMasking=none,-110.60chr16:29817855-29822504"	NA	inner
CUST_46850_PI429285431	6.60393	P	6.9287577	P	0.798393732234992	0	lncRNA	50983-2_{3001..3423}	"gi|307133758|ref|NR_036623.1| Homo sapiens DBF4 homolog B (S. cerevisiae) (DBF4B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|307133758|ref|NR_036623.1| Homo sapiens DBF4 homolog B (S. cerevisiae) (DBF4B), transcript variant 3, non-coding RNA"	Chr17	 42788976	 42789398	+	80174	NR_036623.1	NA	NA	NA	NA	NA	inter
LNCA_19_P00315967	8.530645	P	8.373396	P	1.11515867142232	0	lncRNA	TCONS_00024895	NA	NA	NA	NA	XLOC_011803	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011803), lincRNA [TCONS_00024895]"	chr16:83966326-83966385	hs|16q23.3	Agilent_HUMAN_G3V2	TCONS_00024895	TCONS_00024895	chr16	 83966326	 83966385	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30561_PI429285431	7.143986	P	7.5809555	P	0.738684648150233	0	lncRNA	32342-1_{1..699}	n335757|X06814|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321214|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321214|-0.0320899|-0.0841751	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335757|X06814|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321214|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321214|-0.0320899|-0.0841751	chr19	 49607969	 49608667	+	NA	NA	NA	NA	SNRNP70	NA	chr19:49597969-49611870	inner
CUST_15544_PI429285431	1.1214415	A	1.0435973	A	1.05543973208668	0	lncRNA	17231-1_{1..1679}	lnc-ACSL1-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ACSL1-2:8	chr4	185820461	185822139	-	lnc-ACSL1-2	lnc-ACSL1-2:8	XLOC_004209	linc-ACSL1-2	NA	NA	NA	inter
CUST_13455_PI429285431	0.9038354	A	0.89342666	A	1.00724087807796	0	lncRNA	15093-1_{1..750}	lnc-RP11-785H20.1.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-785H20.1.1-1:3	chr8	123005837	123006586	+	lnc-RP11-785H20.1.1-1	lnc-RP11-785H20.1.1-1:3	XLOC_006911	linc-ZHX2-1	NA	NA	NA	inter
CUST_46111_PI429285431	4.8063946	P	3.5396254	P	2.40622107788191	0	lncRNA	50372-1_{1..3000}	"gi|315138997|ref|NR_037660.1| Homo sapiens POC1 centriolar protein homolog B (Chlamydomonas) (POC1B), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315138997|ref|NR_037660.1| Homo sapiens POC1 centriolar protein homolog B (Chlamydomonas) (POC1B), transcript variant 4, non-coding RNA"	Chr12	 89813495	 89816494	-	282809	NR_037660.1	NA	NA	NA	NA	NA	inter
CUST_35887_PI429285431	1.2756058	A	1.1697879	A	1.07610428806642	0	lncRNA	37274-1_{1..3000}	n344549|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_97|NULL|-1.3386900|-0.3545874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344549|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_97|NULL|-1.3386900|-0.3545874	chr5	 88236140	 88239139	+	NA	NA	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-62.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
CUST_12781_PI429285431	1.395672	A	2.7264185	A	0.397562476157422	0	lncRNA	14406-1_{1..333}	lnc-PTN-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTN-3:1	chr7	136431584	136431916	-	lnc-PTN-3	lnc-PTN-3:1	XLOC_006618	linc-MTPN-2	NA	NA	NA	inter
CUST_15248_PI429285431	8.242084	P	9.075745	P	0.561103571150509	0	lncRNA	16919-1_{1..481}	lnc-PLCL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-PLCL2-1:1	chr3	 17786860	 17787340	+	lnc-PLCL2-1	lnc-PLCL2-1:1	XLOC_002590	linc-KCNH8-4	TBC1D5	NA	chr3:17776860-17784240	inter
CUST_40852_PI429285431	0.91108865	A	0.9051956	A	1.00409310495848	0	lncRNA	41555-1_{1..3000}	n410628|NR_037867|lncRNA|Homosapiens||RefGeneNoncode|NR_037867||0.1364550|-0.2345765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410628|NR_037867|lncRNA|Homosapiens||RefGeneNoncode|NR_037867||0.1364550|-0.2345765	chr4	185764449	185767448	-	NA	NA	NA	NA	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
CUST_43616_PI429285431	3.434276	P	2.9678302	A	1.38170133482446	0	lncRNA	48378-1_{1..1202}	"gi|343098450|ref|NR_040773.1| Homo sapiens uncharacterized LOC100505666 (LOC100505666), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|343098450|ref|NR_040773.1| Homo sapiens uncharacterized LOC100505666 (LOC100505666), transcript variant 2, non-coding RNA"	Chr1	155017667	155018868	-	100505666	NR_040773.1	NA	NA	NA	"hg19_refFlat_EFNA4:range=chr1:155036300-1550416495'pad=0,hg19_refFlat_EFNA4:range=chr1:155036300-1550416495'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.30;hg19_refFlat_EFNA4:range=chr1:155036300-1550414655'pad=0,hg19_refFlat_EFNA4:range=chr1:155036300-1550414655'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.30;hg19_refFlat_EFNA4:range=chr1:155036300-1550415875'pad=0,hg19_refFlat_EFNA4:range=chr1:155036300-1550415875'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.30"	NA	inter
CUST_26715_PI429285431	2.3544767	A	2.2586722	A	1.06866116683132	0	lncRNA	28211-1_{1..2005}	n2129|AJ006345|KvLQT1-ASRNA|Homosapiens|KvLQT1-AS|NONCODEv2.0|n2129|NULL|-1.5906100|-0.0950331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n2129|AJ006345|KvLQT1-ASRNA|Homosapiens|KvLQT1-AS|NONCODEv2.0|n2129|NULL|-1.5906100|-0.0950331	chr11	  2542708	  2544712	+	NA	NA	NA	NA	KCNQ1	NA	chr11:2532708-2870340	inter
CUST_6349_PI429285431	1.1073959	A	0.9658745	A	1.10306774737814	0	lncRNA	6273-1_{1..594}	"transcript_id ""ENST00000589196.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589196.1"" | genecode_v17"	chr19	 15724066	 15724659	-	ENSG00000266951.1	ENST00000589196.1	AD000091.2	AD000091.2-001	CYP4F8	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70chr19:15726029-15735364"	NA	inter
CUST_36019_PI429285431	3.3314986	P	3.371586	P	0.972596024725891	0	lncRNA	37351-1_{1..898}	n344629|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_177|NULL|-1.5604200|-0.4249026	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344629|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_177|NULL|-1.5604200|-0.4249026	chr12	 47046172	 47047069	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23741_PI429285431	1.2777383	A	1.8544848	A	0.670474096328013	0	lncRNA	25304-1_{1..471}	lnc-PRKD1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRKD1-2:4	chr14	 30943207	 30943677	-	lnc-PRKD1-2	lnc-PRKD1-2:4	ENSG00000257636.1	RP11-1103G16.1	NA	NA	NA	inter
CUST_31250_PI429285431	2.1828775	A	3.0695493	A	0.540860408571177	0	lncRNA	33041-1_{1..1783}	n337705|BC039321|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|87|NULL|-0.4498900|-0.1364883	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337705|BC039321|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|87|NULL|-0.4498900|-0.1364883	chr1	  9257201	  9258983	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36107_PI429285431	2.3292675	A	2.7102137	A	0.767933771579815	0	lncRNA	37400-2_{3001..6000}	n344685|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_234|NULL|-1.2890500|-0.3100919	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344685|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_234|NULL|-1.2890500|-0.3100919	chr13	 43417667	 43420666	-	NA	NA	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60"	NA	inter
CUST_17486_PI429285431	0.9135517	A	0.9187023	A	0.996436241446784	0	lncRNA	19213-1_{1..663}	lnc-CCRN4L-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCRN4L-8:1	chr4	138601032	138601694	+	lnc-CCRN4L-8	lnc-CCRN4L-8:1	XLOC_003703	linc-CCRN4L-8	NA	NA	NA	inter
CUST_7470_PI429285431	0.9166594	A	0.916332	A	1.00022696213893	0	lncRNA	9112-2_{3001..3467}	lnc-CCDC83-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC83-1:1	chr11	 85726166	 85726632	+	lnc-CCDC83-1	lnc-CCDC83-1:1	ENSG00000247103	ENST00000499589	PICALM	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_PICALM:range=chr11:85670089-857798225'pad=0,hg19_refFlat_PICALM:range=chr11:85670089-857798225'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PICALM:range=chr11:85670089-857426305'pad=0,hg19_refFlat_PICALM:range=chr11:85670089-857426305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60chr11:85713166-85735382"	NA	inner
LNCA_21_P0003079	0.92441666	A	0.9127004	A	1.00815415810688	0	lncRNA	TCONS_00006348	NA	NA	NA	NA	XLOC_002968	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002968), lincRNA [TCONS_00006348]"	chr3:191309317-191309376	hs|3q28	Agilent_HUMAN_G3V2	TCONS_00006348	TCONS_00006348	chr3	191309317	191309376	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47234_PI429285431	1.3802052	A	0.90623516	A	1.38892629206453	0	lncRNA	51309-1_{1..796}	"gi|397139939|ref|XR_132674.2| PREDICTED: Homo sapiens uncharacterized LOC100287166 (LOC100287166), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139939|ref|XR_132674.2| PREDICTED: Homo sapiens uncharacterized LOC100287166 (LOC100287166), misc_RNA"	Chr20	 19737034	 19737829	-	100287166	XR_132674.3	NA	NA	NA	NA	NA	inter
CUST_18244_PI429285431	7.152216	P	7.38808	P	0.849176292838705	0	lncRNA	19978-1_{1..693}	lnc-SPATA21-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPATA21-1:2	chr1	 16861157	 16861849	-	lnc-SPATA21-1	lnc-SPATA21-1:2	ENSG00000241374	RP4-798A10.5	LOC100506533	NA	chr1:16862280-16863350	inter
CUST_30739_PI429285431	1.457879	A	1.8460448	A	0.764100442008153	0	lncRNA	32523-1_{1..239}	n336305|Y18488|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326090_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326090_07|-1.2752400|-0.2853926	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336305|Y18488|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326090_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326090_07|-1.2752400|-0.2853926	chr6	  2840520	  2840758	+	NA	NA	NA	NA	SERPINB1	NA	chr6:2833733-2842081	inter
CUST_13514_PI429285431	0.9140738	A	0.90552723	A	1.00594161267118	0	lncRNA	15154-1_{1..632}	lnc-CLDN10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLDN10-1:1	chr13	 96056900	 96057531	+	lnc-CLDN10-1	lnc-CLDN10-1:1	XLOC_010474	linc-CLDN10-1	NA	NA	NA	inter
CUST_40372_PI429285431	5.128609	P	4.0953946	P	2.04657906053088	0	lncRNA	41169-3_{6001..6204}	n409150|NR_033268|lncRNA|Homosapiens||RefGeneNoncode|NR_033268||2.7426600|-0.2811811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409150|NR_033268|lncRNA|Homosapiens||RefGeneNoncode|NR_033268||2.7426600|-0.2811811	chr3	131106624	131106827	+	NA	NA	NA	NA	NUDT16	NA	chr3:131100515-131107674	inter
CUST_530_PI429285431	1.3676429	A	1.2904735	A	1.05494618066119	0	lncRNA	522-1_{1..440}	"transcript_id ""ENST00000435554.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435554.1"" | genecode_v17"	chr1	194320073	194320512	+	ENSG00000231714.1	ENST00000435554.1	RP11-476H20.1	RP11-476H20.1-001	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30"	NA	inter
CUST_545_PI429285431	3.8505852	P	4.283256	P	0.740888938763349	0	lncRNA	537-1_{1..2219}	"transcript_id ""ENST00000444037.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444037.1"" | genecode_v17"	chr1	204595903	204598121	+	ENSG00000240219.1	ENST00000444037.1	RP11-430C7.5	RP11-430C7.5-001	LRRN2	NA	chr1:204586301-204608840	inner
CUST_52144_PI429285431	4.4655457	P	4.0449038	P	1.33852297291562	0	lncRNA	55668-1_{1..499}	hg19_lincRNAsTranscripts_TCONS_l2_00017905 range=chr22:21389469-21399191 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017905 range=chr22:21389469-21399191 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 21389469	 21389967	-	NA	NA	NA	NA	P2RX6	NA	chr22:21379469-21382302	inter
LNCA_19_P00808794	2.5466406	A	0.91214	A	3.104800563338	0	lncRNA	TCONS_l2_00014842	NA	NA	NA	NA	XLOC_l2_008221	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008221), lincRNA [TCONS_l2_00014842]"	chr2:114581451-114581392	hs|2q14.1	Agilent_HUMAN_G3V2	TCONS_l2_00014842	TCONS_l2_00014842	chr2	114581392	114581451	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9023_PI429285431	2.3176684	A	2.2951362	A	1.01574073133991	0	lncRNA	10550-1_{1..375}	lnc-CCDC90B-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCDC90B-2:7	chr11	 82903778	 82904152	-	lnc-CCDC90B-2	lnc-CCDC90B-2:7	ENSG00000247137	RP11-727A23.5	ANKRD42	NA	chr11:82905291-82913858	inter
LNCA_21_P0004784	3.3765445	P	3.7520719	P	0.770823574437492	0	lncRNA	ENST00000421237	NA	NA	NA	NA	XLOC_005863	NA	ENST00000421237	NA	NA	"BROAD Institute lincRNA (XLOC_005863), lincRNA [TCONS_00011579]"	chr6:143277594-143267285	hs|6q24.2	Agilent_HUMAN_G3V2	ENST00000421237	ENST00000421237	chr6	143267285	143277594	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_317_PI429285431	0.92596036	A	1.5796335	A	0.635659844761064	0	lncRNA	308-1_{1..748}	"transcript_id ""ENST00000442418.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000442418.1"" | genecode_v17"	chr1	 95104017	 95104764	-	ENSG00000224081.3	ENST00000442418.1	RP11-86H7.1	RP11-86H7.1-005	SLC44A3	NA	chr1:95285901-95295652	inter
LNCA_21_P0008745	2.5385609	A	0.94392824	A	3.02017607391409	0	lncRNA	TCONS_00023689	NA	NA	NA	NA	XLOC_011491	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011491), lincRNA [TCONS_00023689]"	chr15:61938854-61935875	hs|15q22.2	Agilent_HUMAN_G3V2	TCONS_00023689	TCONS_00023689	chr15	 61935875	 61938854	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3512_PI429285431	3.754446	P	4.2361484	P	0.716132079521018	0	lncRNA	3483-1_{1..408}	"transcript_id ""ENST00000423523.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423523.1"" | genecode_v17"	chr9	110182565	110182972	-	ENSG00000226825.1	ENST00000423523.1	RP11-363D24.1	RP11-363D24.1-001	NA	NA	NA	inter
CUST_45076_PI429285431	5.711233	P	5.8390393	P	0.915222039977983	0	lncRNA	49559-1_{1..2964}	"gi|205277371|ref|NR_015431.1| Homo sapiens uncharacterized LOC378805 (FLJ43663), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|205277371|ref|NR_015431.1| Homo sapiens uncharacterized LOC378805 (FLJ43663), transcript variant 1, non-coding RNA"	Chr7	130628919	130631882	-	378805	NR_015431.1	NA	NA	NA	NA	NA	inter
CUST_5598_PI429285431	1.2310445	A	1.8074608	A	0.670627570123853	0	lncRNA	5527-1_{1..798}	"transcript_id ""ENST00000605277.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605277.1"" | genecode_v17"	chr16	 67583117	 67583914	-	ENSG00000261386.2	ENST00000605277.1	CTD-2012K14.6	CTD-2012K14.6-002	CTCF	NA	chr16:67596310-67607861	inner
CUST_103_PI429201921	1.0636264	A	1.1272216	A	0.956876606587817	0	lncRNA	106-1_{1..3000}	TC02004732.hg.1	TCONS_00003462-XLOC_002419 // Rinn lincRNAs // linc-NEUROD1 chr2:-:182555106-182558142 // chr2 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr2:-:182555106-182558142	NA	Affy_HUMAN_HTA2.0	TCONS_00003462-XLOC_002419	linc-NEUROD1	chr2	182555106	182558142	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48189_PI429285431	0.9046793	A	0.91881263	A	0.990251351334383	0	lncRNA	52052-1_{1..2380}	"gi|310118106|ref|XR_113304.1| PREDICTED: Homo sapiens uncharacterized LOC441493 (LOC441493), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118106|ref|XR_113304.1| PREDICTED: Homo sapiens uncharacterized LOC441493 (LOC441493), misc_RNA"	NA	NA	NA	NA	NA	XR_113304.1	NA	NA	NA	NA	NA	Unknown
CUST_45110_PI429285431	7.719349	P	7.4361534	P	1.21688733253409	0	lncRNA	49591-1_{1..856}	"gi|89941461|ref|NR_002935.1| Homo sapiens fatty acid binding protein 5 pseudogene 3 (FABP5P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|89941461|ref|NR_002935.1| Homo sapiens fatty acid binding protein 5 pseudogene 3 (FABP5P3), non-coding RNA"	Chr7	152133980	152134835	+	220832	NR_002935.1	NA	NA	NA	NA	NA	inter
CUST_8720_PI429285431	7.3298335	P	7.2757416	P	1.03820540235538	0	lncRNA	10263-1_{1..2867}	lnc-RALGAPA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RALGAPA1-1:1	chr14	 36294029	 36296895	-	lnc-RALGAPA1-1	lnc-RALGAPA1-1:1	ENSG00000247439	ENSG00000258938.1	BRMS1L	"hg19_refFlat_NUTF2:range=chr16:67899034-679048165'pad=0,hg19_refFlat_NUTF2:range=chr16:67899034-679048165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRMS1L:range=chr14:36295723-363396835'pad=0,hg19_refFlat_BRMS1L:range=chr14:36295723-363396835'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10chr14:36288964-36305971"	NA	inner
CUST_22806_PI429285431	5.559502	P	4.896376	P	1.58351002399755	0	lncRNA	24386-1_{1..598}	lnc-GPBP1L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-GPBP1L1-1:1	chr1	 46162434	 46163031	-	lnc-GPBP1L1-1	lnc-GPBP1L1-1:1	ENSG00000230896.1	RP11-767N6.7	IPP	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50chr1:46159996-46172747"	NA	inner
CUST_50004_PI429285431	6.444513	P	6.777365	P	0.793965376313596	0	lncRNA	53741-1_{1..1910}	hg19_lincRNAsTranscripts_TCONS_l2_00027727 range=chr8:39172101-39275240 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027727 range=chr8:39172101-39275240 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 39172101	 39174010	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9125_PI429285431	7.656808	P	7.816164	P	0.895424687476372	0	lncRNA	10644-1_{1..2398}	lnc-SPPL2A.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPPL2A.1-1:1	chr15	 51200749	 51203146	-	lnc-SPPL2A.1-1	lnc-SPPL2A.1-1:1	ENSG00000247586	XLOC_011476	AP4E1	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-29.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.81;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.41;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00chr15:51200946-51210796"	NA	inter
LNCA_21_P0003446	3.9634316	P	4.452909	P	0.712283067576621	0	lncRNA	TCONS_00007714	NA	NA	NA	NA	XLOC_003872	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003872), lincRNA [TCONS_00007714]"	chr4:7096379-7096320	hs|4p16.1	Agilent_HUMAN_G3V2	TCONS_00007714	TCONS_00007714	chr4	  7096320	  7096379	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18597_PI429285431	3.3939228	P	2.967163	P	1.3442111724892	0	lncRNA	20304-1_{1..631}	lnc-GTF2F2-2:25	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2F2-2:25	chr13	 45965167	 45965797	+	lnc-GTF2F2-2	lnc-GTF2F2-2:25	ENSG00000170919	XXyac-R12DG2.2	SLC25A30	"hg19_refFlat_RCN1:range=chr11:32112743-321260185'pad=0,hg19_refFlat_RCN1:range=chr11:32112743-321260185'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.80chr13:45967451-45975683"	NA	inter
CUST_34718_PI429285431	0.9273194	A	0.91373986	A	1.0094570578873	0	lncRNA	36165-1_{1..1984}	n341625|AK026750|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4096|NULL|-0.3359000|-0.1087773	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341625|AK026750|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4096|NULL|-0.3359000|-0.1087773	chr8	142363506	142365489	-	NA	NA	NA	NA	GPR20	NA	chr8:142366585-142375465	inter
CUST_6581_PI429285431	4.1847997	P	4.5366526	P	0.783577077923396	0	lncRNA	6529-1_{1..664}	"transcript_id ""ENST00000594382.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594382.1"" | genecode_v17"	chr19	 54697731	 54698394	+	ENSG00000268816.1	ENST00000594382.1	CTD-3093M3.1	CTD-3093M3.1-001	RPS9	"hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70chr19:54704726-54708394"	NA	inner
CUST_5894_PI429285431	8.13085	P	8.432229	P	0.81147637587271	0	lncRNA	5825-1_{1..527}	"transcript_id ""ENST00000506394.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506394.1"" | genecode_v17"	chr17	 49021465	 49021991	+	ENSG00000251665.1	ENST00000506394.1	RP11-700H6.2	RP11-700H6.2-002	NA	NA	NA	inter
CUST_28245_PI429285431	5.7103286	P	5.7635922	P	0.963753700747474	0	lncRNA	29881-1_{1..3000}	n325537|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255302|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255302|-0.3264270|-0.3759335	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325537|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255302|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255302|-0.3264270|-0.3759335	chr17	 67578778	 67581777	-	NA	NA	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-95.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90"	NA	inter
CUST_40691_PI429285431	0.9073006	A	1.5169731	A	0.655345452199152	0	lncRNA	41426-1_{1..1498}	n410249|NR_037173_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037173_2||-1.1252000|-0.3663833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410249|NR_037173_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037173_2||-1.1252000|-0.3663833	chr6	  4043969	  4045466	+	NA	NA	NA	NA	PRPF4B	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00chr6:4033969-4056384"	NA	inner
CUST_12836_PI429285431	0.90757847	A	0.9148646	A	0.994962371161607	0	lncRNA	14463-1_{1..473}	lnc-EIF5B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF5B-1:1	chr2	100125461	100125933	+	lnc-EIF5B-1	lnc-EIF5B-1:1	XLOC_001588	linc-NMS-2	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00"	NA	inter
CUST_44671_PI429285431	0.91416407	A	0.9249519	A	0.992550333404647	0	lncRNA	49232-1_{1..1012}	"gi|310119705|ref|XR_108671.1| PREDICTED: Homo sapiens uncharacterized LOC100506379, transcript variant 1 (LOC100506379), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119705|ref|XR_108671.1| PREDICTED: Homo sapiens uncharacterized LOC100506379, transcript variant 1 (LOC100506379), misc_RNA"	Chr6	 10746654	 10747665	-	100506379	XR_108671.2	NA	NA	NA	NA	NA	inter
CUST_38770_PI429285431	7.168078	P	7.1271334	P	1.02878720134253	0	lncRNA	39763-1_{1..3000}	n384393|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fwf.1||-0.4361260|-0.2981330	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384393|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fwf.1||-0.4361260|-0.2981330	chr3	195961239	195964238	-	NA	NA	NA	NA	OSTalpha	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-21.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50chr3:195951239-195960301"	NA	inter
CUST_120_PI429285431	0.91226983	A	0.90286463	A	1.00654048402053	0	lncRNA	112-1_{1..881}	"transcript_id ""ENST00000587530.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587530.1"" | genecode_v17"	chr1	   719750	   720630	+	ENSG00000237491.3	ENST00000587530.1	RP11-206L10.9	RP11-206L10.9-011	NA	NA	NA	inter
CUST_36321_PI429285431	7.8177567	P	8.983375	P	0.445773172463523	0	lncRNA	37552-1_{1..374}	n344847|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_396|NULL|-1.3883400|-0.2509593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344847|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_396|NULL|-1.3883400|-0.2509593	chr5	123716880	123717253	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34060_PI429285431	2.0302734	A	1.1278771	A	1.86916807293214	0	lncRNA	35590-1_{1..947}	n340880|AL110159|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3345|NULL|-1.0786900|-0.3161664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340880|AL110159|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3345|NULL|-1.0786900|-0.3161664	chr6	 24701134	 24702080	-	NA	NA	NA	NA	C6orf62	"hg19_refFlat_ACOT13:range=chr6:24687910-247018435'pad=0,hg19_refFlat_ACOT13:range=chr6:24687910-247018435'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ACOT13:range=chr6:24667492-247018435'pad=0,hg19_refFlat_ACOT13:range=chr6:24667492-247018435'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30chr6:24705089-24712021"	NA	inner
CUST_21461_PI429285431	8.230539	P	7.940502	P	1.22267163447163	0	lncRNA	23079-1_{1..643}	lnc-MAP6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP6-1:2	chr11	 75283374	 75284016	-	lnc-MAP6-1	lnc-MAP6-1:2	ENSG00000254969.1	RP11-939C17.2	SERPINH1	"hg19_refFlat_SERPINH1:range=chr11:75277395-752831285'pad=0,hg19_refFlat_SERPINH1:range=chr11:75277395-752831285'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30chr11:75273374-75283849"	NA	inner
CUST_38017_PI429285431	0.9124646	A	0.91983205	A	0.994906289968114	0	lncRNA	39102-1_{1..593}	n377590|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029955||-1.3122800|-0.3508194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377590|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029955||-1.3122800|-0.3508194	chr6	  2656281	  2656873	-	NA	NA	NA	NA	MYLK4	NA	chr6:2663863-2670447	inter
LNCA_32_P100430	7.001005	P	7.7635202	P	0.589467754047431	0	lncRNA	XR_108797	XR_108797	XR_108797	100128737	NA	LOC100128737	uncharacterized LOC100128737	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100128737, transcript variant 3 (LOC100128737), miscRNA [XR_108797]"	chr7:107383512-107383453	hs|7q22.3	Agilent_HUMAN_G3V2	XR_108797	XR_108797	chr7	107383453	107383512	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10455_PI429285431	1.0839719	A	1.1603869	A	0.94841145957543	0	lncRNA	11981-1_{1..2056}	lnc-CTD-2134A5.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CTD-2134A5.2.1-1:1	chr14	104322461	104324516	+	lnc-CTD-2134A5.2.1-1	lnc-CTD-2134A5.2.1-1:1	XLOC_010944	linc-TDRD9-3	PPP1R13B	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80chr14:104312461-104313927"	NA	inter
CUST_2340_PI429285431	1.0928531	A	1.5432582	A	0.731837323646181	0	lncRNA	2332-1_{1..468}	"transcript_id ""ENST00000508992.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508992.1"" | genecode_v17"	chr5	122065104	122065571	-	ENSG00000251538.1	ENST00000508992.1	RP11-166A12.1	RP11-166A12.1-002	NA	NA	NA	inter
CUST_18667_PI429285431	3.7056677	P	3.4616516	P	1.18428482800729	0	lncRNA	20369-1_{1..1013}	lnc-AC110781.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC110781.3.1-1:1	chr7	  1783940	  1784952	+	lnc-AC110781.3.1-1	lnc-AC110781.3.1-1:1	ENSG00000225968	ELFN1	ELFN1	NA	chr7:1773940-1787590	inner
CUST_19307_PI429285431	3.3817813	P	1.7569828	A	3.08399088232768	0	lncRNA	20973-1_{1..273}	lnc-IL16-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL16-1:2	chr15	 81633903	 81634175	+	lnc-IL16-1	lnc-IL16-1:2	ENSG00000259343.1	RP11-761I4.3	TMC3	NA	chr15:81624760-81644051	inner
CUST_28013_PI429285431	0.90393674	A	0.90392095	A	1.00001094485388	0	lncRNA	29623-1_{1..1074}	n325269|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328290|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328290|-0.1789320|-0.4194795	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325269|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328290|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328290|-0.1789320|-0.4194795	chr2	 67167081	 67168154	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24973_PI429285431	0.89417964	A	0.8938153	A	1.00025257313499	0	lncRNA	26513-1_{1..2125}	lnc-AC114947.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC114947.1.1-1:1	chr5	 43287703	 43289827	+	lnc-AC114947.1.1-1	lnc-AC114947.1.1-1:1	ENSG00000261604.1	CTD-2636A23.2	NIM1	NA	chr5:43277703-43280952	inner
CUST_1428_PI429285431	0.9400137	A	0.9588516	A	0.98702744122786	0	lncRNA	1417-1_{1..561}	"transcript_id ""ENST00000475362.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000475362.1"" | genecode_v17"	chr3	107575934	107576494	-	ENSG00000241469.2	ENST00000475362.1	LINC00635	LINC00635-006	NA	NA	NA	inter
CUST_14456_PI429285431	0.88622475	A	0.8890662	A	0.998032395221007	0	lncRNA	16119-1_{1..554}	lnc-RP11-683L23.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RP11-683L23.1.1-2:1	chr18	    16856	    17409	-	lnc-RP11-683L23.1.1-2	lnc-RP11-683L23.1.1-2:1	XLOC_012737	linc-PARD6G-1	LOC100652790	NA	chr18:11264-12387	inter
CUST_7051_PI429285431	0.91053045	A	0.9179685	A	0.99485760423519	0	lncRNA	6996-1_{1..1758}	"transcript_id ""ENST00000602507.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602507.1"" | genecode_v17"	chrX	 45627783	 45629540	-	ENSG00000270069.1	ENST00000602507.1	RP6-99M1.2	RP6-99M1.2-001	NA	NA	NA	inter
CUST_39614_PI429285431	1.751	A	2.648684	A	0.536747696590342	0	lncRNA	40554-1_{1..709}	n387676|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011lgj.1||2.8866800|-0.2029631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387676|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011lgj.1||2.8866800|-0.2029631	chr8	 94752338	 94753046	+	NA	NA	NA	NA	RBM12B	NA	chr8:94743728-94753224	inner
CUST_13351_PI429285431	0.89123136	A	0.889659	A	1.00109047103248	0	lncRNA	14988-1_{1..1252}	lnc-UCHL5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UCHL5-1:1	chr1	192924120	192925371	-	lnc-UCHL5-1	lnc-UCHL5-1:1	XLOC_001134	linc-FAM5C-4	NA	NA	NA	inter
CUST_43833_PI429285431	3.488523	P	3.4975276	P	0.993777924679417	0	lncRNA	48557-1_{1..1825}	"gi|300192919|ref|NR_033996.1| Homo sapiens uncharacterized LOC388942 (LOC388942), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|300192919|ref|NR_033996.1| Homo sapiens uncharacterized LOC388942 (LOC388942), non-coding RNA"	Chr2	 42104695	 42106519	+	388942	NR_033996.1	NA	NA	NA	NA	NA	inter
CUST_16604_PI429285431	0.9194311	A	0.89537966	A	1.01681092753846	0	lncRNA	18304-3_{6001..6969}	lnc-LINC00346-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LINC00346-1:1	chr13	111528092	111529060	-	lnc-LINC00346-1	lnc-LINC00346-1:1	XLOC_010723	linc-CARS2-2	ANKRD10	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_LOC100130451:range=chr2:214142441-2141488025'pad=0,hg19_refFlat_LOC100130451:range=chr2:214142441-2141488025'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10chr13:111530887-111532929"	NA	inter
LNCA_19_P00317173	0.9104104	A	1.4192679	A	0.702778762574539	0	lncRNA	THC2524841	NA	NA	NA	NA	XLOC_l2_010723	NA	NA	THC2524841	NA	"BROAD Institute lincRNA (XLOC_l2_010723), lincRNA [TCONS_l2_00021618]"	chr4:079584361-079584420	hs|4q21.21	Agilent_HUMAN_G3V2	THC2524841	THC2524841	chr4	 79584361	 79584420	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2364_PI429285431	0.92013896	A	1.8601892	A	0.521214729471666	0	lncRNA	2357-1_{1..388}	"transcript_id ""ENST00000507509.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507509.1"" | genecode_v17"	chr5	127174178	127174565	-	ENSG00000250603.1	ENST00000507509.1	CTC-228N24.2	CTC-228N24.2-001	NA	NA	NA	inter
CUST_10001_PI429285431	3.6113966	P	3.8690925	P	0.836422687574728	0	lncRNA	11527-1_{1..272}	lnc-SERPINB6-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERPINB6-2:3	chr6	  3052197	  3052468	-	lnc-SERPINB6-2	lnc-SERPINB6-2:3	XLOC_005582	linc-SERPINB6-2	NA	NA	NA	inter
LNCA_33_P3408837	2.7316074	A	2.9833293	P	0.839893378741946	0	lncRNA	ENST00000424774	XR_108364	XR_108364	NA	NA	NA	NA	ENST00000424774	THC2622105	NA	"PREDICTED: Homo sapiens hypothetical LOC100506484 (LOC100506484), miscRNA [XR_108364]"	chr1:16483544-16483603	hs|1p36.13	Agilent_HUMAN_G3V2	ENST00000424774	ENST00000424774	chr1	 16483544	 16483603	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007175	0.9078048	A	0.89894146	A	1.00616250974306	0	lncRNA	TCONS_00019236	NA	NA	NA	NA	XLOC_009066	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009066), lincRNA [TCONS_00019236]"	chr11:10949436-10949495	hs|11p15.3	Agilent_HUMAN_G3V2	TCONS_00019236	TCONS_00019236	chr11	 10949436	 10949495	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25271_PI429285431	1.1247449	A	0.9113731	A	1.15939470347581	0	lncRNA	26801-1_{1..833}	lnc-TMEM64-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM64-2:1	chr8	 91871287	 91872119	-	lnc-TMEM64-2	lnc-TMEM64-2:1	ENSG00000254251.1	RP11-662G23.1	NECAB1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50chr8:91861287-91881468"	NA	inner
CUST_40656_PI429285431	2.891934	A	2.4298801	A	1.37750150975019	0	lncRNA	41394-2_{3001..4160}	n410210|NR_037162|lncRNA|Homosapiens||RefGeneNoncode|NR_037162||8.5780500|-0.1415761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410210|NR_037162|lncRNA|Homosapiens||RefGeneNoncode|NR_037162||8.5780500|-0.1415761	chr3	  9854643	  9855802	+	NA	NA	NA	NA	ARPC4	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20chr3:9841643-9848789"	NA	inter
CUST_40486_PI429285431	1.4778042	A	1.2477927	A	1.17284429816238	0	lncRNA	41251-1_{1..2609}	n409421|NR_033821_4|lncRNA|Homosapiens||RefGeneNoncode|NR_033821_4||-1.1704800|-0.3532014	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409421|NR_033821_4|lncRNA|Homosapiens||RefGeneNoncode|NR_033821_4||-1.1704800|-0.3532014	chr6	  1942684	  1945292	+	NA	NA	NA	NA	GMDS	"hg19_refFlat_GMDS:range=chr6:1624404-22456565'pad=0,hg19_refFlat_GMDS:range=chr6:1624404-22456565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_GMDS:range=chr6:1624404-21761775'pad=0,hg19_refFlat_GMDS:range=chr6:1624404-21761775'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60chr6:1932684-1970520"	NA	inner
CUST_48204_PI429285431	3.1942594	A	2.3281271	A	1.82276970773878	0	lncRNA	52067-1_{1..1233}	hg19_lincRNAsTranscripts_TCONS_l2_00001219 range=chr1:48226250-48260426 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001219 range=chr1:48226250-48260426 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 48226250	 48227482	-	NA	NA	NA	NA	LOC388630	NA	chr1:48226200-48270426	inner
CUST_28060_PI429285431	9.0106325	P	9.071259	P	0.958847642881498	0	lncRNA	29678-1_{1..803}	n325326|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326017|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326017|-0.2442800|-0.3057064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325326|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326017|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326017|-0.2442800|-0.3057064	chr2	 43113143	 43113945	-	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.01;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90"	NA	inter
CUST_23070_PI429285431	1.1316813	A	1.3132957	A	0.88171578925472	0	lncRNA	24641-1_{1..1328}	lnc-DLX5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DLX5-1:1	chr7	 96635695	 96637022	-	lnc-DLX5-1	lnc-DLX5-1:1	ENSG00000248849.1	DLX6-AS2	DLX6	"hg19_refFlat_DLX6:range=chr7:96635290-966393595'pad=0,hg19_refFlat_DLX6:range=chr7:96635290-966393595'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90chr7:96635290-96640352"	NA	inter
CUST_44135_PI429285431	0.92005384	A	0.9019146	A	1.01265253759233	0	lncRNA	48798-1_{1..930}	"gi|300388167|ref|NR_034055.1| Homo sapiens uncharacterized LOC285326 (LOC285326), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300388167|ref|NR_034055.1| Homo sapiens uncharacterized LOC285326 (LOC285326), non-coding RNA"	Chr3	 25900023	 25900952	-	285326	NR_034055.1	NA	NA	NA	NA	NA	inter
CUST_5689_PI429285431	0.8997734	A	1.0150737	A	0.923190126766304	0	lncRNA	5613-1_{1..1095}	"transcript_id ""ENST00000562248.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562248.1"" | genecode_v17"	chr16	 89225554	 89226648	+	ENSG00000180422.3	ENST00000562248.1	LINC00304	LINC00304-002	ACSF3	NA	chr16:89215554-89222169	inter
LNCA_21_P0009790	5.640069	P	5.752359	P	0.925118448805489	0	lncRNA	TCONS_00027578	NA	NA	NA	NA	XLOC_013095	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013095), lincRNA [TCONS_00027578]"	chr19:45248725-45248784	hs|19q13.32	Agilent_HUMAN_G3V2	TCONS_00027578	TCONS_00027578	chr19	 45248725	 45248784	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45899_PI429285431	1.1575587	A	1.0261978	A	1.09532643990082	0	lncRNA	50210-1_{1..375}	"gi|310120776|ref|XR_110517.1| PREDICTED: Homo sapiens sporadic kidney cancer gene 1 (SKCG-1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120776|ref|XR_110517.1| PREDICTED: Homo sapiens sporadic kidney cancer gene 1 (SKCG-1), misc_RNA"	NA	NA	NA	NA	NA	XR_110517.1	NA	NA	NA	NA	NA	Unknown
CUST_32487_PI429285431	1.8578917	A	1.9519204	A	0.936902808575833	0	lncRNA	34156-1_{1..2284}	n339092|AK090992|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1522|NULL|-1.1291900|-0.4666628	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339092|AK090992|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1522|NULL|-1.1291900|-0.4666628	chr2	202643290	202645573	-	NA	NA	NA	NA	ALS2	NA	chr2:202633290-202645895	inner
CUST_6869_PI429285431	0.9093743	A	1.105018	A	0.873183213115803	0	lncRNA	6819-1_{1..1598}	"transcript_id ""ENST00000433952.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433952.1"" | genecode_v17"	chr21	 40346355	 40347952	-	ENSG00000232837.1	ENST00000433952.1	AF064858.7	AF064858.7-001	NA	NA	NA	inter
CUST_3666_PI429285431	0.89316607	A	0.88699985	A	1.00428324499166	0	lncRNA	3634-2_{3001..3965}	"transcript_id ""ENST00000439913.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439913.1"" | genecode_v17"	chr10	 43194483	 43195447	+	ENSG00000234864.1	ENST00000439913.1	AL022344.5	AL022344.5-001	NA	"hg19_refFlat_CUBN:range=chr10:16866974-171717645'pad=0,hg19_refFlat_CUBN:range=chr10:16866974-171717645'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90"	NA	inter
CUST_34570_PI429285431	1.5272217	A	0.89673734	A	1.54808464904972	0	lncRNA	36030-1_{1..2238}	n341453|AK123645|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3923|NULL|-1.1346100|-0.3914318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341453|AK123645|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3923|NULL|-1.1346100|-0.3914318	chr8	 17081050	 17083287	+	NA	NA	NA	NA	ZDHHC2	NA	chr8:17071050-17080241	inter
CUST_40798_PI429285431	5.011867	P	5.917916	P	0.533644543895839	0	lncRNA	41506-1_{1..1394}	n410557|NR_037775|lncRNA|Homosapiens||RefGeneNoncode|NR_037775||5.3374000|-0.1003851	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410557|NR_037775|lncRNA|Homosapiens||RefGeneNoncode|NR_037775||5.3374000|-0.1003851	chr19	 41281441	 41282834	+	NA	NA	NA	NA	RAB4B	NA	chr19:41284124-41302849	inter
CUST_30753_PI429285431	4.1234365	P	4.144251	P	0.985676065839571	0	lncRNA	32538-1_{1..202}	n336572|Z17324|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326545|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326545|-0.7960160|-0.0093883	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336572|Z17324|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326545|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326545|-0.7960160|-0.0093883	chr1	155161993	155162194	-	NA	NA	NA	NA	THBS3	NA	chr1:155165379-155172707	inner
CUST_46450_PI429285431	8.071514	P	7.9823203	P	1.06377548857792	0	lncRNA	50657-1_{1..1742}	"gi|362999006|ref|NR_045620.1| Homo sapiens NADH dehydrogenase (ubiquinone) complex I, assembly factor 1 (NDUFAF1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|362999006|ref|NR_045620.1| Homo sapiens NADH dehydrogenase (ubiquinone) complex I, assembly factor 1 (NDUFAF1), transcript variant 2, non-coding RNA"	Chr15	 41679547	 41681288	-	51103	NR_045620.1	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.82;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00"	NA	inter
CUST_17668_PI429285431	0.91600776	A	1.4924924	A	0.670595803463978	0	lncRNA	19396-1_{1..317}	lnc-DNM1L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNM1L-2:1	chr12	 33475124	 33475440	+	lnc-DNM1L-2	lnc-DNM1L-2:1	XLOC_009706	linc-ALG10	NA	NA	NA	inter
CUST_41872_PI429285431	4.6726174	P	4.9480815	P	0.826184500434266	0	lncRNA	43536-1_{1..79}	ENST00000408710 ncrna:miRNA chromosome:GRCh37:4:134482011:134482089:-1 gene:ENSG00000221637 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408710 ncrna:miRNA chromosome:GRCh37:4:134482011:134482089:-1 gene:ENSG00000221637 gene_biotype:miRNA transcript_biotype:miRNA	chr4	134482011	134482089	-	ENSG00000221637	ENST00000408710	NA	NA	NA	NA	NA	inter
CUST_20570_PI429285431	0.91522837	A	0.97398955	A	0.960088178395259	0	lncRNA	22211-1_{1..537}	lnc-FARSB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FARSB-2:1	chr2	223783948	223784484	-	lnc-FARSB-2	lnc-FARSB-2:1	ENSG00000234193.1	AC097461.4	ACSL3	NA	chr2:223773948-223794081	inner
CUST_17861_PI429285431	0.9196813	A	1.0808579	A	0.894295424565215	0	lncRNA	19598-1_{1..656}	lnc-CTC-236F12.4.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTC-236F12.4.1-1:2	chr5	 55777380	 55778035	-	lnc-CTC-236F12.4.1-1	lnc-CTC-236F12.4.1-1:2	XLOC_004829	linc-ANKRD55-6	NA	NA	NA	inter
CUST_48399_PI429285431	1.1136931	A	0.89068425	A	1.1671652615997	0	lncRNA	52252-1_{1..2532}	hg19_lincRNAsTranscripts_TCONS_l2_00000538 range=chr1:120143600-120152817 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000538 range=chr1:120143600-120152817 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	120143600	120146131	+	NA	NA	NA	NA	ZNF697	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30chr1:120143876-120162817"	NA	inter
CUST_40259_PI429285431	0.89385045	A	0.8982595	A	0.996948544606377	0	lncRNA	41070-1_{1..972}	n408188|NR_028328|lncRNA|Homosapiens||RefGeneNoncode|NR_028328||3.6769200|-0.1889351	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408188|NR_028328|lncRNA|Homosapiens||RefGeneNoncode|NR_028328||3.6769200|-0.1889351	chr11	107462470	107463441	+	NA	NA	NA	NA	ELMOD1	NA	chr11:107456626-107473949	inner
CUST_3256_PI429285431	8.086134	P	8.137845	P	0.964791431799061	0	lncRNA	3235-1_{1..3000}	"transcript_id ""ENST00000562917.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562917.1"" | genecode_v17"	chr8	104476617	104479616	+	ENSG00000261670.1	ENST00000562917.1	RP11-1C8.5	RP11-1C8.5-001	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20"	NA	inter
CUST_23816_PI429285431	0.921401	A	0.903249	A	1.01266149409607	0	lncRNA	25380-1_{1..532}	lnc-KCNN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNN3-1:1	chr1	154680503	154681034	-	lnc-KCNN3-1	lnc-KCNN3-1:1	ENSG00000250970.1	RP11-274N19.2	KCNN3	NA	chr1:154670503-154690702	inner
CUST_50896_PI429285431	3.183062	P	4.083003	P	0.535908647170512	0	lncRNA	54538-1_{1..1267}	hg19_lincRNAsTranscripts_TCONS_l2_00006056 range=chr12:3411880-3417067 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006056 range=chr12:3411880-3417067 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  3411880	  3413146	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50873_PI429285431	1.0773306	A	3.4328833	P	0.195392541081127	0	lncRNA	54517-1_{1..1012}	hg19_lincRNAsTranscripts_TCONS_l2_00005211 range=chr11:117005775-117007618 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005211 range=chr11:117005775-117007618 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	117005775	117006786	-	NA	NA	NA	NA	PAFAH1B2	"hg19_refFlat_PCSK7:range=chr11:117076713-1171005605'pad=0,hg19_refFlat_PCSK7:range=chr11:117076713-1171005605'pad=0 3'pad=0 strand=- repeatMasking=none,-97.30chr11:117015000-117017618"	NA	inter
CUST_48637_PI429285431	7.481518	P	8.800852	P	0.400719882835861	0	lncRNA	52484-1_{1..425}	hg19_lincRNAsTranscripts_TCONS_l2_00013781 range=chr2:91750877-91754755 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013781 range=chr2:91750877-91754755 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 91750877	 91751301	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27510_PI429285431	4.250468	P	4.415787	P	0.891731323383713	0	lncRNA	29081-1_{1..3000}	n324689|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320627|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320627|0.1841860|-0.3150029	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324689|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320627|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320627|0.1841860|-0.3150029	chr22	 26036611	 26039610	+	NA	NA	NA	NA	ADRBK2	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-27.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0,hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90chr22:26026611-26053417"	NA	inner
CUST_49461_PI429285431	0.9648068	A	1.0634607	A	0.9339039599594	0	lncRNA	53258-4_{9001..10040}	hg19_lincRNAsTranscripts_TCONS_l2_00024861 range=chr6:107164396-107235397 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024861 range=chr6:107164396-107235397 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	107173396	107174435	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30"	NA	inter
CUST_2992_PI429285431	0.9109886	A	1.5626022	A	0.636567938117145	0	lncRNA	2971-1_{1..400}	"transcript_id ""ENST00000519147.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519147.1"" | genecode_v17"	chr8	  8608884	  8609283	-	ENSG00000254367.1	ENST00000519147.1	RP11-211C9.1	RP11-211C9.1-002	MFHAS1	NA	chr8:8641999-8648945	inter
CUST_50184_PI429285431	1.0643263	A	0.8959094	A	1.12382461114975	0	lncRNA	53909-2_{3001..4534}	hg19_lincRNAsTranscripts_TCONS_l2_00028700 range=chr9:35406774-35483185 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028700 range=chr9:35406774-35483185 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 35409774	 35411307	+	NA	NA	NA	NA	UNC13B	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60chr9:35396774-35405332"	NA	inter
CUST_5355_PI429285431	0.900084	A	0.8971604	A	1.00202853980572	0	lncRNA	5293-1_{1..1963}	"transcript_id ""ENST00000561121.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561121.1"" | genecode_v17"	chr15	 98525739	 98527701	-	ENSG00000259478.2	ENST00000561121.1	RP11-753A21.1	RP11-753A21.1-001	ARRDC4	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10chr15:98515739-98517068"	NA	inter
CUST_27674_PI429285431	0.8902433	A	1.1437063	A	0.838880374418777	0	lncRNA	29252-1_{1..1625}	n324881|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170850|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170850|-0.7582820|-0.3387258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324881|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170850|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170850|-0.7582820|-0.3387258	chr21	 21037109	 21038733	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4115_PI429285431	3.3133867	P	3.3989227	P	0.942434331172088	0	lncRNA	4076-1_{1..330}	"transcript_id ""ENST00000602310.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602310.1"" | genecode_v17"	chr11	130184934	130185263	+	ENSG00000175773.8	ENST00000602310.1	RP11-121M22.1	RP11-121M22.1-003	ZBTB44	NA	chr11:130174934-130184607	inter
CUST_40208_PI429285431	5.5453095	P	5.8166437	P	0.828552948140956	0	lncRNA	41037-1_{1..3000}	n408038|NR_027822_2|lncRNA|Homosapiens||RefGeneNoncode|NR_027822_2||-0.1993850|-0.1929681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408038|NR_027822_2|lncRNA|Homosapiens||RefGeneNoncode|NR_027822_2||-0.1993850|-0.1929681	chr6	  1521015	  1524014	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60"	NA	inter
CUST_23689_PI429285431	0.93573004	A	0.9078546	A	1.01950965635263	0	lncRNA	25254-1_{1..601}	lnc-RP11-166B2.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-166B2.1.1-1:1	chr16	 12071293	 12071893	-	lnc-RP11-166B2.1.1-1	lnc-RP11-166B2.1.1-1:1	ENSG00000260488.1	RP11-166B2.7	RUNDC2A	NA	chr16:12070602-12081707	inner
CUST_25032_PI429285431	0.8913481	A	0.8908914	A	1.00031661042787	0	lncRNA	26571-1_{1..261}	lnc-GLUL-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-GLUL-1:3	chr1	182173020	182173280	-	lnc-GLUL-1	lnc-GLUL-1:3	ENSG00000228918.1	GS1-122H1.2	NA	NA	NA	inter
LNCA_21_P0008571	1.3068829	A	1.314006	A	0.99507481202833	0	lncRNA	TCONS_00023265	NA	NA	NA	NA	XLOC_011292	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011292), lincRNA [TCONS_00023265]"	chr15:67340521-67340580	hs|15q22.33	Agilent_HUMAN_G3V2	TCONS_00023265	TCONS_00023265	chr15	 67340521	 67340580	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31376_PI429285431	0.90162146	A	0.89451706	A	1.0049365395888	0	lncRNA	33155-1_{1..3000}	n337843|BX641171|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|226|NULL|-1.1551700|-0.4373500	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337843|BX641171|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|226|NULL|-1.1551700|-0.4373500	chrX	121005721	121008720	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25402_PI429285431	2.9552612	A	6.4310045	P	0.089887025557805	0	lncRNA	26933-1_{1..1344}	lnc-CCDC33-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC33-1:1	chr15	 74513591	 74514934	+	lnc-CCDC33-1	lnc-CCDC33-1:1	ENSG00000259264.1	RP11-60L3.1	NA	"hg19_refFlat_STRA6:range=chr15:74472421-745017955'pad=0,hg19_refFlat_STRA6:range=chr15:74472421-745017955'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00"	NA	inter
CUST_7066_PI429285431	0.8990553	A	0.8946849	A	1.00303392349616	0	lncRNA	7011-1_{1..713}	"transcript_id ""ENST00000446028.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446028.1"" | genecode_v17"	chrX	 56644824	 56645536	+	ENSG00000230105.1	ENST00000446028.1	RP11-431N15.2	RP11-431N15.2-001	NA	NA	NA	inter
CUST_48147_PI429285431	0.9034806	A	1.3136632	A	0.752528121190341	0	lncRNA	52014-1_{1..725}	"gi|341913907|ref|XR_133042.1| PREDICTED: Homo sapiens uncharacterized LOC100506412, transcript variant 2 (LOC100506412), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|341913907|ref|XR_133042.1| PREDICTED: Homo sapiens uncharacterized LOC100506412, transcript variant 2 (LOC100506412), misc_RNA"	NA	NA	NA	NA	NA	XR_133042.1	NA	NA	NA	NA	NA	Unknown
CUST_20669_PI429285431	1.1194229	A	1.2226202	A	0.930967493928525	0	lncRNA	22307-2_{3001..5671}	lnc-STX8-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STX8-3:1	chr17	  9085246	  9087916	-	lnc-STX8-3	lnc-STX8-3:1	ENSG00000262966.1	RP11-85B7.2	NTN1	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70chr17:9072246-9092435"	NA	inner
CUST_49112_PI429285431	1.473934	A	1.302462	A	1.12620698190597	0	lncRNA	52936-1_{1..896}	hg19_lincRNAsTranscripts_TCONS_l2_00020535 range=chr4:57418633-57470360 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020535 range=chr4:57418633-57470360 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 57418633	 57419528	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_26217_PI429285431	2.5639057	A	2.55175	A	1.00846128520527	0	lncRNA	27726-1_{1..2585}	lnc-LIN54-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIN54-1:11	chr4	 83821487	 83824071	-	lnc-LIN54-1	lnc-LIN54-1:11	ENSG00000251022.1	RP11-163O17.1	SEC31A	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50chr4:83811487-83812419"	NA	inter
CUST_11073_PI429285431	0.90075296	A	0.90535164	A	0.996817512806098	0	lncRNA	12625-1_{1..1905}	lnc-SLC22A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC22A2-1:1	chr6	160538218	160540122	-	lnc-SLC22A2-1	lnc-SLC22A2-1:1	XLOC_005902	linc-TCP1-1	SLC22A1	NA	chr6:160542863-160549659	inter
CUST_9681_PI429285431	2.5962512	A	2.6140823	A	0.987716489173576	0	lncRNA	11198-1_{1..2433}	lnc-SRSF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRSF2-1:1	chr17	 74775999	 74778431	-	lnc-SRSF2-1	lnc-SRSF2-1:1	XLOC_012579	linc-SRSF2-3	MFSD11	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30chr17:74765999-74775336"	NA	inter
CUST_24522_PI429285431	1.1519868	A	1.1890978	A	0.974604642571732	0	lncRNA	26073-1_{1..927}	lnc-C17orf75-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-C17orf75-3:1	chr17	 30850415	 30851341	-	lnc-C17orf75-3	lnc-C17orf75-3:1	ENSG00000265222.1	RP11-466A19.8	MYO1D	NA	chr17:30840415-30860442	inner
CUST_51973_PI429285431	1.870656	A	2.0886424	A	0.859764591035076	0	lncRNA	55515-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00016358 range=chr20:58609422-58621469 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016358 range=chr20:58609422-58621469 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 58609422	 58612421	+	NA	NA	NA	NA	C20orf197	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0,hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70chr20:58630980-58631469"	NA	inter
CUST_41207_PI429285431	8.820175	P	8.524979	P	1.2270516693018	0	lncRNA	42087-1_{1..66}	ENST00000577599 ncrna:miRNA chromosome:GRCh37:12:120593238:120593303:-1 gene:ENSG00000266704 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577599 ncrna:miRNA chromosome:GRCh37:12:120593238:120593303:-1 gene:ENSG00000266704 gene_biotype:miRNA transcript_biotype:miRNA	chr12	120593238	120593303	-	ENSG00000266704	ENST00000577599	NA	NA	GCN1L1	NA	chr12:120583238-120603303	inner
CUST_2764_PI429285431	3.7922626	P	3.7227764	P	1.04934290511315	0	lncRNA	2747-1_{1..575}	"transcript_id ""ENST00000443947.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443947.1"" | genecode_v17"	chr7	 13141016	 13141590	+	ENSG00000229618.1	ENST00000443947.1	AC011288.2	AC011288.2-002	NA	NA	NA	inter
LNCA_21_P0004053	2.0179777	A	0.91141474	A	2.15332034168734	0	lncRNA	ENST00000503320	NA	NA	NA	NA	XLOC_004527	NA	ENST00000503320	NA	NA	"BROAD Institute lincRNA (XLOC_004527), lincRNA [TCONS_00009496]"	chr5:117963724-117963783	hs|5q23.1	Agilent_HUMAN_G3V2	ENST00000503320	ENST00000503320	chr5	117963724	117963783	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005563	3.1495335	P	3.0115213	A	1.10038791464232	0	lncRNA	BC090890	NA	BC090890	NA	Hs.591823	LOC340239	uncharacterized LOC340239	NA	THC2567548	NA	"BROAD Institute lincRNA (XLOC_006116), lincRNA [TCONS_00014146]"	chr7:62855193-62855251	hs|7q11.21	Agilent_HUMAN_G3V2	BC090890	BC090890	chr7	 62855193	 62855251	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41315_PI429285431	2.8834023	A	3.0364301	A	0.899360981751878	0	lncRNA	42345-1_{1..71}	ENST00000579802 ncrna:miRNA chromosome:GRCh37:19:4445975:4446045:1 gene:ENSG00000266437 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579802 ncrna:miRNA chromosome:GRCh37:19:4445975:4446045:1 gene:ENSG00000266437 gene_biotype:miRNA transcript_biotype:miRNA	chr19	  4445975	  4446045	+	ENSG00000266437	ENST00000579802	NA	NA	UBXN6	NA	chr19:4445003-4456045	inner
CUST_39519_PI429285431	0.9071423	A	0.91127074	A	0.997142473975752	0	lncRNA	40465-1_{1..453}	n387336|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011cnp.1||1.4467500|-0.3582066	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387336|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011cnp.1||1.4467500|-0.3582066	chr5	 22142460	 22142912	+	NA	NA	NA	NA	CDH12	NA	chr5:22132460-22162105	inner
CUST_25149_PI429285431	5.034456	P	5.8719954	P	0.559597181006959	0	lncRNA	26687-1_{1..931}	lnc-ZNF276-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF276-1:2	chr16	 89783752	 89784682	+	lnc-ZNF276-1	lnc-ZNF276-1:2	ENSG00000261373.1	RP11-368I7.2	C16orf7	"hg19_refFlat_VPS9D1:range=chr16:89774269-897872695'pad=0,hg19_refFlat_VPS9D1:range=chr16:89774269-897872695'pad=0 3'pad=0 strand=- repeatMasking=none,-100.20chr16:89773752-89787394"	NA	inter
CUST_204_PI429201921	0.9001913	A	0.9146208	A	0.990048084093175	0	lncRNA	163-1_{1..3000}	TC06002636.hg.1	 TCONS_l2_00024098-XLOC_l2_012440 // Broad TUCP // linc-SLC17A4 chr6:+:25732626-25737937 // chr6 // 100 // 100 // 0 // --- // 0///TCONS_l2_00024099-XLOC_l2_012440 // Broad TUCP // linc-SLC17A4 chr6:+:25732626-25737937 // chr6 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr6:+:25732626-25737937	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00024099-XLOC_l2_012440	linc-SLC17A4	chr6	 25732626	 25737937	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28602_PI429285431	0.8908484	A	0.89671135	A	0.99594435915296	0	lncRNA	30284-1_{1..597}	n325965|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048119|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048119|-1.3733100|-0.4484689	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325965|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048119|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048119|-1.3733100|-0.4484689	chr10	 54720837	 54721433	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18892_PI429285431	3.9000893	P	4.1941433	P	0.815606964641598	0	lncRNA	20584-2_{3001..3405}	lnc-AL136219.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AL136219.1-3:1	chr13	 21878154	 21878558	-	lnc-AL136219.1-3	lnc-AL136219.1-3:1	ENSG00000246151	AL158032.1	NA	"hg19_refFlat_MIPEP:range=chr13:24304487-244634595'pad=0,hg19_refFlat_MIPEP:range=chr13:24304487-244634595'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.60;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30"	NA	inter
CUST_42135_PI429285431	5.8636208	P	6.1903305	P	0.797352904250261	0	lncRNA	44149-1_{1..97}	ENST00000385030 ncrna:miRNA chromosome:GRCh37:12:81226312:81226408:-1 gene:ENSG00000207763 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385030 ncrna:miRNA chromosome:GRCh37:12:81226312:81226408:-1 gene:ENSG00000207763 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 81226312	 81226408	-	ENSG00000207763	ENST00000385030	NA	NA	LIN7A	NA	chr12:81216312-81236408	inner
CUST_28403_PI429285431	0.9976352	A	0.9247523	A	1.05181640239452	0	lncRNA	30061-1_{1..721}	n325724|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045102|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045102|-1.2275900|-0.5828463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325724|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045102|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045102|-1.2275900|-0.5828463	chr13	 51961128	 51961848	+	NA	NA	NA	NA	INTS6	NA	chr13:51951128-51981441	inner
CUST_38834_PI429285431	1.4340582	A	0.9515593	A	1.39716160296746	0	lncRNA	39826-2_{3001..3851}	n384640|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jox.1||-0.9847360|-0.3244947	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384640|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jox.1||-0.9847360|-0.3244947	chr5	 52254186	 52255036	+	NA	NA	NA	NA	ITGA1	NA	chr5:52241186-52249485	inter
CUST_1444_PI429285431	3.5920758	P	2.5351763	A	2.08045560077158	0	lncRNA	1433-1_{1..622}	"transcript_id ""ENST00000465249.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000465249.1"" | genecode_v17"	chr3	114172440	114173061	+	ENSG00000242290.1	ENST00000465249.1	RP11-197K3.1	RP11-197K3.1-001	ZBTB20	NA	chr3:114162440-114248979	inner
CUST_38544_PI429285431	1.8090326	A	1.5346045	A	1.20951452946422	0	lncRNA	39551-2_{3001..3101}	n383249|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002kgk.3||0.3046560|-0.2439841	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383249|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002kgk.3||0.3046560|-0.2439841	chr17	   119622	   119722	+	NA	NA	NA	NA	RPH3AL	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80chr17:106622-129723"	NA	inner
CUST_5153_PI429285431	1.1460654	A	0.92432845	A	1.16613672593499	0	lncRNA	5094-1_{1..821}	"transcript_id ""ENST00000560675.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560675.1"" | genecode_v17"	chr15	 39048755	 39049575	-	ENSG00000259731.1	ENST00000560675.1	RP11-326N17.1	RP11-326N17.1-001	NA	NA	NA	inter
CUST_32532_PI429285431	12.895764	P	12.568584	P	1.25455872164808	0	lncRNA	34198-1_{1..964}	n339141|BC031310|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1571|NULL|1.6137500|-0.2684198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339141|BC031310|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1571|NULL|1.6137500|-0.2684198	chr16	 27719345	 27720308	-	NA	NA	NA	NA	KIAA0556	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_KIAA0556:range=chr16:27561492-277899505'pad=0,hg19_refFlat_KIAA0556:range=chr16:27561492-277899505'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr16:27709345-27740125"	NA	inner
CUST_35634_PI429285431	9.040775	P	9.135374	P	0.936532522366675	0	lncRNA	37049-1_{1..1027}	n342779|BC031564|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5282|NULL|5.7518600|-0.2022885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342779|BC031564|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5282|NULL|5.7518600|-0.2022885	chr11	 93211637	 93212663	-	NA	NA	NA	NA	C11orf75	NA	chr11:93211638-93276546	inner
CUST_43239_PI429285431	0.9234789	A	0.93094885	A	0.994835606788872	0	lncRNA	48056-1_{1..794}	ENST00000457162 havana:sense_intronic chromosome:GRCh37:21:30430394:30432416:-1 gene:ENSG00000231125 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,ensembl.GRCh37.72,"	>ENST00000457162 havana:sense_intronic chromosome:GRCh37:21:30430394:30432416:-1 gene:ENSG00000231125 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr21	 30430394	 30431187	-	ENSG00000231125	ENST00000457162	NA	NA	USP16	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00chr21:30420394-30426809"	NA	inner
CUST_44662_PI429285431	8.6021185	P	7.444225	P	2.23131392258645	0	lncRNA	49223-2_{3001..3432}	"gi|221307478|ref|NR_026590.1| Homo sapiens chromodomain protein, Y-like (CDYL), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|221307478|ref|NR_026590.1| Homo sapiens chromodomain protein, Y-like (CDYL), transcript variant 6, non-coding RNA"	Chr6	  4709393	  4709824	+	9425	NR_026590.1	NA	NA	NA	NA	NA	inter
CUST_17299_PI429285431	3.0147429	A	3.2837656	A	0.829881527765319	0	lncRNA	19017-2_{3001..3458}	lnc-KLF15-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF15-2:5	chr3	126012524	126012981	-	lnc-KLF15-2	lnc-KLF15-2:5	XLOC_003235	linc-ALDH1L1-2	LOC644662	NA	chr3:125999524-126010368	inter
CUST_21132_PI429285431	0.91241366	A	0.9233118	A	0.992474444849902	0	lncRNA	22757-2_{3001..4656}	lnc-AC004223.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AC004223.1-1:1	chr17	 33335107	 33336762	+	lnc-AC004223.1-1	lnc-AC004223.1-1:1	ENSG00000224113.2	RP5-837J1.2	RFFL	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20chr17:33336131-33346762"	NA	inter
CUST_36563_PI429285431	2.9961956	A	3.13332	P	0.90932983917299	0	lncRNA	37759-1_{1..493}	n345061|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_610|NULL|-1.4777600|-0.3370625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345061|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_610|NULL|-1.4777600|-0.3370625	chr9	132814128	132814620	-	NA	NA	NA	NA	FNBP1	NA	chr9:132804128-132805473	inter
CUST_25299_PI429285431	5.4017997	P	5.9025908	P	0.706719146367143	0	lncRNA	26829-1_{1..459}	lnc-KTN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KTN1-1:1	chr14	 56239707	 56240165	+	lnc-KTN1-1	lnc-KTN1-1:1	ENSG00000258784.1	RP11-813I20.2	NA	NA	NA	inter
CUST_31392_PI429285431	0.9020064	A	0.9008353	A	1.00081207421702	0	lncRNA	33169-1_{1..1069}	n337858|AY145439|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|241|NULL|-1.2930200|-0.3882999	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337858|AY145439|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|241|NULL|-1.2930200|-0.3882999	chrX	133677376	133678444	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34622_PI429285431	10.327909	P	11.394489	P	0.477449482799846	0	lncRNA	36076-1_{1..2807}	n341512|BC047540|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3982|NULL|-0.9750920|-0.2909781	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341512|BC047540|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3982|NULL|-0.9750920|-0.2909781	chr8	 62671658	 62674464	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012682	0.9184505	A	2.4222035	A	0.352634858634116	0	lncRNA	TCONS_l2_00021307	NA	NA	NA	NA	XLOC_l2_011281	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011281), lincRNA [TCONS_l2_00021307]"	chr4:139051897-139051838	hs|4q28.3	Agilent_HUMAN_G3V2	TCONS_l2_00021307	TCONS_l2_00021307	chr4	139051838	139051897	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002888	0.9168968	A	0.91073215	A	1.00428215208998	0	lncRNA	ENST00000474598	NA	NA	NA	NA	XLOC_003285	NA	ENST00000474598	THC2695760	NA	"BROAD Institute lincRNA (XLOC_003285), lincRNA [TCONS_00005848]"	chr3:150619041-150618982	hs|3q25.1	Agilent_HUMAN_G3V2	ENST00000474598	ENST00000474598	chr3	150618982	150619041	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22770_PI429285431	4.825311	P	5.0904307	P	0.832129690281929	0	lncRNA	24352-1_{1..3000}	lnc-IL17B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL17B-3:1	chr5	148656253	148659252	-	lnc-IL17B-3	lnc-IL17B-3:1	ENSG00000253406.1	AC012613.2	AFAP1L1	"hg19_refFlat_ABLIM3:range=chr5:148521659-1486379675'pad=0,hg19_refFlat_ABLIM3:range=chr5:148521659-1486379675'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30chr5:148651401-148666368"	NA	inner
CUST_16740_PI429285431	3.4406092	P	4.277957	P	0.559671504364884	0	lncRNA	18447-1_{1..1720}	lnc-TPO-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPO-4:1	chr2	  1756544	  1758263	+	lnc-TPO-4	lnc-TPO-4:1	XLOC_001317	linc-TTC15-5	PXDN	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30chr2:1746544-1748291"	NA	inter
CUST_26239_PI429285431	3.7761154	P	3.4657307	P	1.24003831668747	0	lncRNA	27746-1_{1..654}	lnc-DLX2-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DLX2-4:5	chr2	173377062	173377715	-	lnc-DLX2-4	lnc-DLX2-4:5	ENSG00000225205.1	AC093818.1	ITGA6	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30chr2:173367062-173371181"	NA	inter
CUST_42858_PI429285431	9.2253065	P	9.375968	P	0.900837318802633	0	lncRNA	45907-1_{1..134}	ENST00000384771 ncrna:snoRNA chromosome:GRCh37:1:116164493:116164626:-1 gene:ENSG00000207502 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384771 ncrna:snoRNA chromosome:GRCh37:1:116164493:116164626:-1 gene:ENSG00000207502 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	116164493	116164626	-	ENSG00000207502	ENST00000384771	NA	NA	NA	NA	NA	inter
CUST_15998_PI429285431	0.8948922	A	1.1217141	A	0.854515223866804	0	lncRNA	17695-1_{1..700}	lnc-SLC25A48-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A48-2:7	chr5	135162155	135162854	+	lnc-SLC25A48-2	lnc-SLC25A48-2:7	XLOC_004565	linc-SLC25A48-1	SLC25A48	NA	chr5:135170365-135172255	inter
CUST_2302_PI429285431	1.0785794	A	1.2737738	A	0.873455191810797	0	lncRNA	2295-1_{1..3000}	"transcript_id ""ENST00000512693.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512693.1"" | genecode_v17"	chr5	108572821	108575820	-	ENSG00000249476.1	ENST00000512693.1	CTD-2587M2.1	CTD-2587M2.1-001	PJA2	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40chr5:108670410-108672070"	NA	inter
LNCA_21_P0003890	0.91157556	A	0.90378404	A	1.00541528002841	0	lncRNA	TCONS_00009028	NA	NA	NA	NA	XLOC_003882	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003882), lincRNA [TCONS_00009028]"	chr4:11744571-11744512	hs|4p15.33	Agilent_HUMAN_G3V2	TCONS_00009028	TCONS_00009028	chr4	 11744512	 11744571	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29223_PI429285431	6.7312703	P	6.7553387	P	0.983455446052028	0	lncRNA	30973-1_{1..441}	n326747|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006885|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006885|-1.1429200|-0.3498964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326747|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006885|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006885|-1.1429200|-0.3498964	chr1	   704298	   704738	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26917_PI429285431	0.90250516	A	0.90355486	A	0.999272668038783	0	lncRNA	28435-1_{1..744}	n323993|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053635|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053635|-0.2975350|-0.3722404	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323993|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053635|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053635|-0.2975350|-0.3722404	chr9	112941346	112942089	-	NA	NA	NA	NA	PALM2-AKAP2	NA	chr9:112931346-112934792	inner
CUST_8853_PI429285431	0.9048463	A	0.9087007	A	0.997331899231991	0	lncRNA	10392-1_{1..2444}	lnc-CA8-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CA8-3:6	chr8	 61326115	 61328558	-	lnc-CA8-3	lnc-CA8-3:6	ENSG00000251396	XLOC_007093	NA	"hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30"	NA	inter
CUST_11660_PI429285431	1.5878708	A	1.2852974	A	1.23334242073993	0	lncRNA	13237-1_{1..216}	lnc-MYT1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYT1L-1:1	chr2	  2616948	  2617163	-	lnc-MYT1L-1	lnc-MYT1L-1:1	XLOC_001943	linc-MYT1L-4	NA	NA	NA	inter
CUST_7610_PI429285431	0.90453	A	0.8978748	A	1.00462368953316	0	lncRNA	9245-1_{1..1960}	lnc-ADAMTSL4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ADAMTSL4-2:1	chr1	150589415	150591374	+	lnc-ADAMTSL4-2	lnc-ADAMTSL4-2:1	ENSG00000248003	AL356356.4	ENSA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50chr1:150594599-150600027"	NA	inter
CUST_18435_PI429285431	9.049838	P	8.346738	P	1.62799921053635	0	lncRNA	20157-1_{1..277}	lnc-ARFGEF2-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARFGEF2-2:5	chr20	 47130290	 47130566	+	lnc-ARFGEF2-2	lnc-ARFGEF2-2:5	ENSG00000229963	RP5-991B18.1	NA	NA	NA	inter
LNCA_19_P00319276	8.100705	P	8.573141	P	0.720746584423292	0	lncRNA	TCONS_00028710	NA	NA	NA	NA	XLOC_013812	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013812), lincRNA [TCONS_00028710]"	chr20:55851047-55850988	hs|20q13.31	Agilent_HUMAN_G3V2	TCONS_00028710	TCONS_00028710	chr20	 55850988	 55851047	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_85_PI429201921	7.4832067	P	8.400476	P	0.529510317318785	0	lncRNA	87-1_{1..2535}	TC16001366.hg.1	TCONS_l2_00010385-XLOC_l2_005087 // Broad TUCP // linc-SNRNP25-2 chr16:+:61554-64090 // chr16 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00010384-XLOC_l2_005087 // Broad TUCP // linc-SNRNP25-2 chr16:+:61554-64041 // chr16 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr16:+:61554-64090	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00010385-XLOC_l2_005087	linc-SNRNP25-2	chr16	    61554	    64090	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37701_PI429285431	5.1077805	P	4.9776435	P	1.0943976215982	0	lncRNA	38795-1_{1..202}	n346196|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1746|NULL|-1.3098300|-0.3715789	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346196|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1746|NULL|-1.3098300|-0.3715789	chr14	 19921647	 19921848	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008503	0.906527	A	1.8547356	A	0.518275607361785	0	lncRNA	TCONS_00022932	NA	NA	NA	NA	XLOC_010775	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010775), lincRNA [TCONS_00022932]"	chr14:25719415-25719474	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022932	TCONS_00022932	chr14	 25719415	 25719474	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004358	1.3221376	A	1.8482505	A	0.694423222752525	0	lncRNA	TCONS_00010258	NA	NA	NA	NA	XLOC_004724	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004724), lincRNA [TCONS_00010258]"	chr5:6359257-6359198	hs|5p15.31	Agilent_HUMAN_G3V2	TCONS_00010258	TCONS_00010258	chr5	  6359198	  6359257	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46810_PI429285431	6.3456054	P	6.3664412	P	0.985661513391116	0	lncRNA	50955-1_{1..1423}	"gi|312147404|ref|NR_027922.2| Homo sapiens CCL15-CCL14 readthrough (non-protein coding) (CCL15-CCL14), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|312147404|ref|NR_027922.2| Homo sapiens CCL15-CCL14 readthrough (non-protein coding) (CCL15-CCL14), transcript variant 2, non-coding RNA"	Chr17	 34310692	 34312114	-	348249	NR_027922.2	NA	NA	NA	NA	NA	inter
CUST_22861_PI429285431	1.2463583	A	0.921655	A	1.25240684619242	0	lncRNA	24439-1_{1..498}	lnc-ANKRD30A-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ANKRD30A-2:3	chr10	 37635705	 37636202	+	lnc-ANKRD30A-2	lnc-ANKRD30A-2:3	ENSG00000235687.2	RP11-20F24.4	NA	NA	NA	inter
CUST_39539_PI429285431	0.88988197	A	1.5690488	A	0.624525839891642	0	lncRNA	40484-1_{1..2515}	n387450|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ejm.1||-0.0138424|-0.3264504	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387450|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ejm.1||-0.0138424|-0.3264504	chr6	  1135921	  1138435	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30"	NA	inter
CUST_41771_PI429285431	1.2543252	A	0.88598746	A	1.29086465105193	0	lncRNA	43334-1_{1..94}	ENST00000578455 ncrna:miRNA chromosome:GRCh37:17:73402150:73402243:1 gene:ENSG00000264511 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578455 ncrna:miRNA chromosome:GRCh37:17:73402150:73402243:1 gene:ENSG00000264511 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 73402150	 73402243	+	ENSG00000264511	ENST00000578455	NA	NA	GRB2	NA	chr17:73392150-73401790	inter
CUST_51175_PI429285431	4.2234697	P	4.6922975	P	0.722551437514421	0	lncRNA	54796-1_{1..456}	hg19_lincRNAsTranscripts_TCONS_l2_00007764 range=chr14:62331609-62336605 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007764 range=chr14:62331609-62336605 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 62331609	 62332064	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4628_PI429285431	0.89760745	A	1.192725	A	0.815005923461914	0	lncRNA	4574-1_{1..577}	"transcript_id ""ENST00000417989.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417989.1"" | genecode_v17"	chr13	 53720674	 53721250	-	ENSG00000237092.1	ENST00000417989.1	RP11-24H2.2	RP11-24H2.2-001	NA	NA	NA	inter
CUST_52182_PI429285431	0.9125493	A	0.909617	A	1.00203458243728	0	lncRNA	55700-1_{1..339}	hg19_lincRNAsTranscripts_TCONS_l2_00017656 range=chr22:25723209-25726131 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017656 range=chr22:25723209-25726131 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 25723209	 25723547	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47665_PI429285431	15.574025	P	15.421049	P	1.11186066096928	0	lncRNA	51647-1_{1..948}	"gi|325301079|ref|NR_037927.1| Homo sapiens signal sequence receptor, delta (SSR4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|325301079|ref|NR_037927.1| Homo sapiens signal sequence receptor, delta (SSR4), transcript variant 4, non-coding RNA"	NW_003871103.3	  1228432	  1229379	+	6748	NR_037927.1	NA	NA	NA	NA	NA	Unknown
CUST_51838_PI429285431	0.88949966	A	1.2501018	A	0.778839446314923	0	lncRNA	55393-1_{1..578}	hg19_lincRNAsTranscripts_TCONS_l2_00012541 range=chr19:40128254-40133028 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012541 range=chr19:40128254-40133028 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 40128254	 40128831	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15551_PI429285431	0.9150729	A	1.0519042	A	0.909514598698668	0	lncRNA	17236-1_{1..556}	lnc-DMRTA1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRTA1-6:1	chr9	 24146434	 24146989	+	lnc-DMRTA1-6	lnc-DMRTA1-6:1	XLOC_007303	linc-IFT74-4	NA	NA	NA	inter
CUST_32796_PI429285431	5.890904	P	6.178753	P	0.819122427005842	0	lncRNA	34431-1_{1..1340}	n339441|CR598744|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1874|NULL|-1.2174800|-0.3441620	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339441|CR598744|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1874|NULL|-1.2174800|-0.3441620	chr3	116018475	116019814	+	NA	NA	NA	NA	LSAMP	NA	chr3:116008475-116029815	inner
CUST_2593_PI429285431	1.0535169	A	0.91023386	A	1.10441549939552	0	lncRNA	2581-1_{1..589}	"transcript_id ""ENST00000423489.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423489.1"" | genecode_v17"	chr6	106060542	106061130	-	ENSG00000237567.1	ENST00000423489.1	RP3-359N14.2	RP3-359N14.2-001	NA	NA	NA	inter
LNCA_21_P0012297	0.9068168	A	0.9159858	A	0.993664686761594	0	lncRNA	TCONS_l2_00018032	NA	NA	NA	NA	XLOC_l2_009539	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009539), lincRNA [TCONS_l2_00018032]"	chr22:35589990-35589931	hs|22q12.3	Agilent_HUMAN_G3V2	TCONS_l2_00018032	TCONS_l2_00018032	chr22	 35589931	 35589990	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27197_PI429285431	0.8899817	A	0.8865411	A	1.00238768818754	0	lncRNA	28739-1_{1..845}	n324329|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042895|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042895|-1.2214800|-0.2656050	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324329|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042895|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042895|-1.2214800|-0.2656050	chr6	159448810	159449654	+	NA	NA	NA	NA	TAGAP	"hg19_refFlat_TAGAP:range=chr6:159456859-1594651785'pad=0,hg19_refFlat_TAGAP:range=chr6:159456859-1594651785'pad=0 3'pad=0 strand=- repeatMasking=none,-99.20;hg19_refFlat_TAGAP:range=chr6:159456859-1594618075'pad=0,hg19_refFlat_TAGAP:range=chr6:159456859-1594618075'pad=0 3'pad=0 strand=- repeatMasking=none,-99.20chr6:159456024-159466184"	NA	inner
CUST_35387_PI429285431	0.91960925	A	1.4057875	A	0.713913777857998	0	lncRNA	36796-1_{1..3000}	n342437|AK058000|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4930|NULL|-1.1787800|-0.3412964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342437|AK058000|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4930|NULL|-1.1787800|-0.3412964	chr2	105950483	105953482	-	NA	NA	NA	NA	TGFBRAP1	"hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20chr2:105940483-105946148"	NA	inter
LNCA_19_P00806098	7.0885944	P	7.259414	P	0.888337869997447	0	lncRNA	XR_110148	XR_110148	XR_110148	NA	NA	LOC100130938	uncharacterized LOC100130938	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100130938 (LOC100130938), miscRNA [XR_110148]"	chr18:59273546-59273487	hs|18q21.33	Agilent_HUMAN_G3V2	XR_110148	XR_110148	chr18	 59273487	 59273546	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11090_PI429285431	0.9212461	A	0.91006917	A	1.00777734516506	0	lncRNA	12644-1_{1..970}	lnc-RP11-511B23.3.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-511B23.3.1-1:2	chr12	 93575081	 93576050	+	lnc-RP11-511B23.3.1-1	lnc-RP11-511B23.3.1-1:2	XLOC_009840	linc-NUDT4-1	NA	NA	NA	inter
CUST_35564_PI429285431	4.50632	P	4.7216506	P	0.861348755187765	0	lncRNA	36978-1_{1..2177}	n342694|BC045187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5196|NULL|-0.6383490|-0.1463489	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342694|BC045187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5196|NULL|-0.6383490|-0.1463489	chr5	134571923	134574099	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15286_PI429285431	0.90653163	A	0.91203034	A	0.996195838890991	0	lncRNA	16963-1_{1..725}	lnc-SLC15A4-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC15A4-2:5	chr12	128602670	128603394	-	lnc-SLC15A4-2	lnc-SLC15A4-2:5	XLOC_010257	linc-DHX37-11	NA	NA	NA	inter
CUST_23475_PI429285431	0.89463085	A	0.8991391	A	0.996879996581465	0	lncRNA	25042-1_{1..732}	lnc-GLIPR1L1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLIPR1L1-2:2	chr12	 75438258	 75438989	+	lnc-GLIPR1L1-2	lnc-GLIPR1L1-2:2	ENSG00000257434.1	RP11-81K13.1	KCNC2	"hg19_refFlat_KCNC2:range=chr12:75434877-756017635'pad=0,hg19_refFlat_KCNC2:range=chr12:75434877-756017635'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr12:75433896-75448573"	NA	inner
CUST_6610_PI429285431	2.3874996	A	2.1958578	A	1.1420626542524	0	lncRNA	6558-1_{1..1385}	"transcript_id ""ENST00000600047.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600047.1"" | genecode_v17"	chr19	 57772722	 57774106	+	ENSG00000268713.1	ENST00000600047.1	CTC-444N24.8	CTC-444N24.8-001	ZNF805	NA	chr19:57762722-57774106	inner
CUST_17296_PI429285431	0.92003906	A	0.9213849	A	0.999067569781987	0	lncRNA	19015-1_{1..264}	lnc-RP11-150O12.5.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-150O12.5.1-2:1	chr8	 37440275	 37440538	+	lnc-RP11-150O12.5.1-2	lnc-RP11-150O12.5.1-2:1	XLOC_006774	linc-ZNF703-1	NA	NA	NA	inter
LNCA_21_P0010068	4.9810195	P	4.7098227	P	1.20680853089224	0	lncRNA	TCONS_00028459	NA	NA	NA	NA	XLOC_013832	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013832), lincRNA [TCONS_00028459]"	chr20:60809905-60809846	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028459	TCONS_00028459	chr20	 60809846	 60809905	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23487_PI429285431	2.534573	A	1.9399664	A	1.51006075985571	0	lncRNA	25054-1_{1..535}	lnc-AC040934.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC040934.1-2:2	chr17	 45400903	 45401437	-	lnc-AC040934.1-2	lnc-AC040934.1-2:2	ENSG00000263293.1	RP11-290H9.4	C17orf57	NA	chr17:45401327-45410979	inter
CUST_44539_PI429285431	7.5741444	P	6.235809	P	2.52859398006271	0	lncRNA	49130-3_{6001..7919}	"gi|402478651|ref|NR_073105.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402478651|ref|NR_073105.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 4, non-coding RNA"	Chr5	 52291156	 52293074	+	3673	NR_073105.1	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.21;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50"	NA	inter
CUST_46283_PI429285431	0.91003424	A	0.91121876	A	0.999179290268296	0	lncRNA	50520-1_{1..2474}	"gi|310123076|ref|XR_110266.1| PREDICTED: Homo sapiens uncharacterized LOC100128908 (LOC100128908), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123076|ref|XR_110266.1| PREDICTED: Homo sapiens uncharacterized LOC100128908 (LOC100128908), misc_RNA"	Chr14	 23569451	 23571924	-	100128908	XR_110266.2	NA	NA	NA	NA	NA	inter
CUST_26004_PI429285431	9.004904	P	8.768603	P	1.17796853213418	0	lncRNA	27523-1_{1..2625}	lnc-CTD-2517M22.14.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2517M22.14.1-1:5	chr8	145724283	145726907	-	lnc-CTD-2517M22.14.1-1	lnc-CTD-2517M22.14.1-1:5	ENSG00000255182.1	CTD-2517M22.14	PPP1R16A	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PPP1R16A:range=chr8:145722578-1457272865'pad=0,hg19_refFlat_PPP1R16A:range=chr8:145722578-1457272865'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80chr8:145722109-145727504"	NA	inner
CUST_6187_PI429285431	2.461269	A	2.295516	A	1.12175141199854	0	lncRNA	6111-1_{1..1100}	"transcript_id ""ENST00000590604.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590604.1"" | genecode_v17"	chr18	 52546688	 52547787	+	ENSG00000267311.1	ENST00000590604.1	RP11-99A1.2	RP11-99A1.2-001	RAB27B	NA	chr18:52536688-52558040	inner
CUST_18137_PI429285431	0.90898395	A	0.91993684	A	0.992436781349806	0	lncRNA	19872-1_{1..491}	lnc-TXLNB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TXLNB-1:1	chr6	139629165	139629655	-	lnc-TXLNB-1	lnc-TXLNB-1:1	XLOC_005855	linc-TXLNB-2	NA	NA	NA	inter
CUST_27904_PI429285431	1.9225168	A	1.5050896	A	1.33554371590562	0	lncRNA	29499-1_{1..2213}	n325142|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331081|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331081|-0.7643760|-0.2040748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325142|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331081|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331081|-0.7643760|-0.2040748	chr2	129716215	129718427	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6422_PI429285431	0.89594525	A	1.1382059	A	0.845419532635802	0	lncRNA	6361-1_{1..556}	"transcript_id ""ENST00000590280.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590280.1"" | genecode_v17"	chr19	 28885758	 28886313	-	ENSG00000267238.1	ENST00000590280.1	AC093074.1	AC093074.1-001	NA	NA	NA	inter
CUST_3216_PI429285431	0.910514	A	0.89701444	A	1.00940109724744	0	lncRNA	3195-1_{1..517}	"transcript_id ""ENST00000517368.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517368.1"" | genecode_v17"	chr8	 86851934	 86852450	+	ENSG00000253154.1	ENST00000517368.1	CTA-392E5.1	CTA-392E5.1-001	NA	NA	NA	inter
CUST_21415_PI429285431	0.9087064	A	1.1775234	A	0.829999861020587	0	lncRNA	23035-1_{1..515}	lnc-RP11-214N1.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RP11-214N1.1.1-1:1	chr14	 43172607	 43173121	+	lnc-RP11-214N1.1.1-1	lnc-RP11-214N1.1.1-1:1	ENSG00000258394.1	CTD-2307P3.1	NA	NA	NA	inter
CUST_24983_PI429285431	6.921645	P	6.914098	P	1.00524488829306	0	lncRNA	26523-1_{1..564}	lnc-AP3S1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP3S1-4:1	chr5	114938743	114939306	+	lnc-AP3S1-4	lnc-AP3S1-4:1	ENSG00000249249.1	AC010226.4	TMED7-TICAM2	NA	chr5:114928743-114948902	inner
CUST_26804_PI429285431	0.9116356	A	0.9148366	A	0.997783695512694	0	lncRNA	28316-1_{1..406}	n323872|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056580|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056580|-1.0198000|-0.3277510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323872|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056580|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056580|-1.0198000|-0.3277510	chrX	 51156122	 51156527	+	NA	NA	NA	NA	NUDT11	NA	chrX:51232863-51235253	inter
CUST_11515_PI429285431	6.2765284	P	6.519168	P	0.845197497035224	0	lncRNA	13085-1_{1..389}	lnc-SCNN1D-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCNN1D-1:3	chr1	  1214448	  1214836	+	lnc-SCNN1D-1	lnc-SCNN1D-1:3	XLOC_000015	linc-SCNN1D	UBE2J2	NA	chr1:1204448-1209234	inter
CUST_27586_PI429285431	1.5781034	A	0.8995861	A	1.60049403499302	0	lncRNA	29164-1_{1..468}	n324788|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257965|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257965|-1.4213500|-0.3405602	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324788|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257965|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257965|-1.4213500|-0.3405602	chr21	 39610954	 39611421	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43759_PI429285431	0.9083992	A	0.89660907	A	1.00820577972626	0	lncRNA	48496-2_{3001..3236}	"gi|224586913|ref|NR_027247.1| Homo sapiens POTE ankyrin domain family, member F pseudogene (LOC100130331), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224586913|ref|NR_027247.1| Homo sapiens POTE ankyrin domain family, member F pseudogene (LOC100130331), non-coding RNA"	Chr1	238028475	238028710	+	100130331	NR_027247.2	NA	NA	NA	"hg19_refFlat_ZP4:range=chr1:238045722-2380539355'pad=0,hg19_refFlat_ZP4:range=chr1:238045722-2380539355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80"	NA	inter
CUST_27475_PI429285431	4.5912647	P	4.950481	P	0.779587951992973	0	lncRNA	29045-1_{1..2949}	n324651|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317991|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317991|0.1037740|-0.1618656	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324651|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317991|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317991|0.1037740|-0.1618656	chr22	 45316055	 45319003	+	NA	NA	NA	NA	PHF21B	"hg19_refFlat_PHF21B:range=chr22:45278966-454046925'pad=0,hg19_refFlat_PHF21B:range=chr22:45278966-454046925'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60;hg19_refFlat_PHF21B:range=chr22:45278966-454054305'pad=0,hg19_refFlat_PHF21B:range=chr22:45278966-454054305'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90chr22:45306055-45332757"	NA	inner
CUST_2464_PI429285431	6.488065	P	6.9286337	P	0.736844092752423	0	lncRNA	2456-1_{1..2597}	"transcript_id ""ENST00000603222.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603222.1"" | genecode_v17"	chr6	  3020388	  3022984	+	ENSG00000270346.1	ENST00000603222.1	RP1-90J20.12	RP1-90J20.12-001	NQO2	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-24.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0,hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20chr6:3010388-3019994"	NA	inter
CUST_38889_PI429285431	3.6821027	P	3.5415397	P	1.10233520929627	0	lncRNA	39875-1_{1..930}	n384834|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ndk.1||1.0340400|-0.1801296	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384834|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ndk.1||1.0340400|-0.1801296	chr6	 21845773	 21846702	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22393_PI429285431	1.0287969	A	1.329071	A	0.812098089848515	0	lncRNA	23983-1_{1..576}	lnc-TIGIT-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIGIT-2:3	chr3	114085814	114086389	+	lnc-TIGIT-2	lnc-TIGIT-2:3	ENSG00000241560.1	ZBTB20-AS1	ZBTB20	NA	chr3:114075814-114095943	inner
CUST_46405_PI429285431	6.310626	P	6.3364353	P	0.982269426166397	0	lncRNA	50619-1_{1..423}	"gi|341915664|ref|XR_132753.1| PREDICTED: Homo sapiens uncharacterized LOC100653021 (LOC100653021), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915664|ref|XR_132753.1| PREDICTED: Homo sapiens uncharacterized LOC100653021 (LOC100653021), misc_RNA"	Chr14	102298038	102298460	+	100653021	XR_132753.2	NA	NA	NA	NA	NA	inter
CUST_39380_PI429285431	4.55878	P	4.26046	P	1.22971159576706	0	lncRNA	40343-1_{1..364}	n386518|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mst.1||-0.9098350|-0.1443467	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386518|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mst.1||-0.9098350|-0.1443467	chr9	102121913	102122276	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50303_PI429285431	0.89749515	A	1.0202835	A	0.91841088752087	0	lncRNA	54021-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00029500 range=chr9:99855064-99861040 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029500 range=chr9:99855064-99861040 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 99855064	 99858063	-	NA	NA	NA	NA	NA	"hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90"	NA	inter
CUST_16006_PI429285431	1.8221896	A	1.8554131	A	0.9772343631046	0	lncRNA	17703-1_{1..281}	lnc-TTC40-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC40-3:1	chr10	134825174	134825454	-	lnc-TTC40-3	lnc-TTC40-3:1	XLOC_009007	linc-C10orf93-1	NA	NA	NA	inter
CUST_34220_PI429285431	5.088748	P	5.020541	P	1.04841289254483	0	lncRNA	35733-1_{1..1997}	n341081|AK092185|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3547|NULL|-0.9804740|-0.3470685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341081|AK092185|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3547|NULL|-0.9804740|-0.3470685	chr11	 82686478	 82688474	-	NA	NA	NA	NA	RAB30	NA	chr11:82692478-82698475	inter
CUST_12470_PI429285431	4.344969	P	4.598687	P	0.838732113292507	0	lncRNA	14082-1_{1..1513}	lnc-SIK1-4:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIK1-4:9	chr21	 44896276	 44897788	-	lnc-SIK1-4	lnc-SIK1-4:9	XLOC_014105	linc-SIK1-2	NA	NA	NA	inter
CUST_6158_PI429285431	2.4401262	A	2.5942512	A	0.898677258786692	0	lncRNA	6084-1_{1..704}	"transcript_id ""ENST00000595135.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595135.1"" | genecode_v17"	chr18	 39062440	 39063143	-	ENSG00000267313.2	ENST00000595135.1	RP11-142I20.1	RP11-142I20.1-003	NA	NA	NA	inter
CUST_548_PI429285431	0.9044953	A	0.9165528	A	0.991677205700743	0	lncRNA	540-1_{1..917}	"transcript_id ""ENST00000417084.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417084.1"" | genecode_v17"	chr1	207422412	207423328	+	ENSG00000237074.1	ENST00000417084.1	RP11-6J21.2	RP11-6J21.2-001	NA	NA	NA	inter
CUST_18725_PI429285431	0.91119707	A	1.0181494	A	0.928547533170231	0	lncRNA	20423-1_{1..2562}	lnc-LGALS14-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LGALS14-1:2	chr19	 40176825	 40179386	+	lnc-LGALS14-1	lnc-LGALS14-1:2	ENSG00000226025	AC093063.1	NA	NA	NA	inter
CUST_17200_PI429285431	1.089078	A	0.9091848	A	1.13280002313697	0	lncRNA	18913-1_{1..1117}	lnc-RP11-168K9.2.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RP11-168K9.2.1-2:2	chr11	126925144	126926260	+	lnc-RP11-168K9.2.1-2	lnc-RP11-168K9.2.1-2:2	XLOC_009323	linc-FLI1-4	NA	NA	NA	inter
CUST_23652_PI429285431	7.170146	P	7.164298	P	1.00406175135509	0	lncRNA	25218-1_{1..617}	lnc-UPK3B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UPK3B-1:3	chr7	 76827552	 76828168	+	lnc-UPK3B-1	lnc-UPK3B-1:3	ENSG00000259628.1	RP11-467H10.2	CCDC146	NA	chr7:76817552-76837943	inner
CUST_19906_PI429285431	0.91457194	A	1.0789517	A	0.892312057634026	0	lncRNA	21561-1_{1..2157}	lnc-CLEC4E-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLEC4E-2:3	chr12	  8549019	  8551175	-	lnc-CLEC4E-2	lnc-CLEC4E-2:3	ENSG00000226091.2	RP11-90D4.2	CLEC6A	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20chr12:8539019-8559091"	NA	inter
CUST_16735_PI429285431	1.5105469	A	1.3418688	A	1.12402809806465	0	lncRNA	18442-1_{1..326}	lnc-CMPK2-13:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMPK2-13:4	chr2	  5831319	  5831644	-	lnc-CMPK2-13	lnc-CMPK2-13:4	XLOC_001958	linc-RNASEH1-2	SOX11	NA	chr2:5832799-5841457	inter
CUST_17425_PI429285431	1.5147405	A	0.9113981	A	1.51923221187275	0	lncRNA	19149-1_{1..600}	lnc-TNP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNP1-1:1	chr2	217719741	217720340	-	lnc-TNP1-1	lnc-TNP1-1:1	XLOC_002485	linc-IGFBP5	TNP1	NA	chr2:217724181-217724782	inter
CUST_5546_PI429285431	1.0375248	A	0.9059483	A	1.09549014048911	0	lncRNA	5476-1_{1..559}	"transcript_id ""ENST00000569998.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569998.1"" | genecode_v17"	chr16	 52231924	 52232482	-	ENSG00000260975.1	ENST00000569998.1	RP11-142G1.3	RP11-142G1.3-001	NA	NA	NA	inter
CUST_2120_PI429285431	0.92836744	A	0.9971432	A	0.953446729258917	0	lncRNA	2111-1_{1..452}	"transcript_id ""ENST00000504398.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504398.1"" | genecode_v17"	chr5	 28782785	 28783236	-	ENSG00000250453.1	ENST00000504398.1	CTD-2134P3.1	CTD-2134P3.1-001	NA	NA	NA	inter
CUST_44658_PI429285431	0.90829635	A	0.9038143	A	1.00311155117762	0	lncRNA	49220-1_{1..1591}	"gi|223633973|ref|NR_026856.1| Homo sapiens uncharacterized LOC401232 (DKFZP686I15217), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223633973|ref|NR_026856.1| Homo sapiens uncharacterized LOC401232 (DKFZP686I15217), transcript variant 2, non-coding RNA"	Chr6	  2988201	  2989791	+	401232	NR_026856.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014293	4.333777	P	4.1825294	P	1.11052940993208	0	lncRNA	XR_109188	XR_109188	XR_109188	NA	Hs.443005	LOC100506104	uncharacterized LOC100506104	NA	THC2497956	NA	"PREDICTED: Homo sapiens hypothetical LOC100506104 (LOC100506104), miscRNA [XR_109188]"	chr15:49104036-49104095	hs|15q21.1	Agilent_HUMAN_G3V2	XR_109188	XR_109188	chr15	 49104036	 49104095	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006697	11.334932	P	11.511991	P	0.884504262185387	0	lncRNA	ENST00000412362	NA	BM804629	NA	Hs.665563	XLOC_008560	NA	ENST00000412362	THC2642590	NA	"BROAD Institute lincRNA (XLOC_008560), lincRNA [TCONS_00017857]"	chr10:92754441-92754500	hs|10q23.31	Agilent_HUMAN_G3V2	ENST00000412362	ENST00000412362	chr10	 92754441	 92754500	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35782_PI429285431	1.6365548	A	0.92048234	A	1.64270390496637	0	lncRNA	37196-1_{1..3000}	n344466|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_14|NULL|-1.2771200|-0.3167784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344466|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_14|NULL|-1.2771200|-0.3167784	NA	NA	     2999	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20645_PI429285431	1.7055657	A	1.3103361	A	1.31515204551798	0	lncRNA	22284-1_{1..419}	lnc-TMEM126B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM126B-1:1	chr11	 84666384	 84666802	+	lnc-TMEM126B-1	lnc-TMEM126B-1:1	ENSG00000255555.1	AP000857.3	DLG2	NA	chr11:84656384-84676749	inner
CUST_43220_PI429285431	7.661899	P	7.393814	P	1.20420832809802	0	lncRNA	48034-1_{1..399}	ENST00000602718 havana:sense_intronic chromosome:GRCh37:22:42485634:42486032:-1 gene:ENSG00000270083 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602718 havana:sense_intronic chromosome:GRCh37:22:42485634:42486032:-1 gene:ENSG00000270083 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr22	 42485634	 42486032	-	ENSG00000270083	ENST00000602718	NA	NA	NDUFA6	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20chr22:42481530-42486888"	NA	inner
LNCA_21_P0010811	5.4283085	P	5.676698	P	0.841835643442034	0	lncRNA	TCONS_l2_00002951	NA	NA	NA	NA	XLOC_l2_001529	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001529), lincRNA [TCONS_l2_00002951]"	chr10:30980159-30980218	hs|10p11.23	Agilent_HUMAN_G3V2	TCONS_l2_00002951	TCONS_l2_00002951	chr10	 30980159	 30980218	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16732_PI429285431	0.9040361	A	1.331628	A	0.743501779321539	0	lncRNA	18439-1_{1..1768}	lnc-NR5A2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR5A2-1:2	chr1	200443037	200444804	+	lnc-NR5A2-1	lnc-NR5A2-1:2	XLOC_000515	linc-CAMSAP1L1-2	NA	NA	NA	inter
CUST_4151_PI429285431	3.0214653	A	3.4400656	P	0.748150126157673	0	lncRNA	4109-1_{1..653}	"transcript_id ""ENST00000539206.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539206.1"" | genecode_v17"	chr12	  6264201	  6264853	-	ENSG00000255775.1	ENST00000539206.1	RP3-454B23.1	RP3-454B23.1-001	NA	NA	NA	inter
CUST_42062_PI429285431	9.249851	P	9.919823	P	0.628518885513157	0	lncRNA	43972-1_{1..84}	ENST00000384901 ncrna:miRNA chromosome:GRCh37:X:139006307:139006390:-1 gene:ENSG00000207633 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384901 ncrna:miRNA chromosome:GRCh37:X:139006307:139006390:-1 gene:ENSG00000207633 gene_biotype:miRNA transcript_biotype:miRNA	chrX	139006307	139006390	-	ENSG00000207633	ENST00000384901	NA	NA	NA	NA	NA	inter
LNCA_21_P0003426	0.91740215	A	0.91161954	A	1.00401624339383	0	lncRNA	ENST00000512652	NA	NA	NA	NA	XLOC_003762	NA	ENST00000512652	THC2608925	NA	"BROAD Institute lincRNA (XLOC_003762), lincRNA [TCONS_00007671]"	chr4:161507479-161507538	hs|4q32.1	Agilent_HUMAN_G3V2	ENST00000512652	ENST00000512652	chr4	161507479	161507538	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005498	0.9169938	A	0.9110104	A	1.00415598910948	0	lncRNA	TCONS_00013812	NA	NA	NA	NA	XLOC_006457	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006457), lincRNA [TCONS_00013812]"	chr7:56594711-56594652	hs|7p11.2	Agilent_HUMAN_G3V2	TCONS_00013812	TCONS_00013812	chr7	 56594652	 56594711	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33027_PI429285431	3.9589853	P	4.498637	P	0.687936972943177	0	lncRNA	34642-1_{1..1832}	n339714|BC012881|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2159|NULL|-0.3010020|-0.1456419	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339714|BC012881|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2159|NULL|-0.3010020|-0.1456419	chr20	 47319306	 47321137	+	NA	NA	NA	NA	PREX1	NA	chr20:47309306-47331138	inner
CUST_40969_PI429285431	2.5576882	A	2.8340719	A	0.825658043245226	0	lncRNA	41641-1_{1..3000}	n411040|NR_038864|lncRNA|Homosapiens||RefGeneNoncode|NR_038864||-1.0368900|-0.2369240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411040|NR_038864|lncRNA|Homosapiens||RefGeneNoncode|NR_038864||-1.0368900|-0.2369240	chr7	 35353465	 35356464	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5845_PI429285431	6.3593116	P	5.5105267	P	1.80098342032792	0	lncRNA	5774-1_{1..535}	"transcript_id ""ENST00000584649.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584649.1"" | genecode_v17"	chr17	 38168797	 38169331	-	ENSG00000265799.1	ENST00000584649.1	RP11-387H17.6	RP11-387H17.6-001	MED24	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr17:38175350-38180958"	NA	inter
CUST_36827_PI429285431	2.581709	A	1.7046001	A	1.83669095965019	0	lncRNA	37995-1_{1..1437}	n345303|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_852|NULL|-1.4568000|-0.2568182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345303|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_852|NULL|-1.4568000|-0.2568182	chr15	 49017334	 49018770	-	NA	NA	NA	NA	CEP152	"hg19_refFlat_OXR1:range=chr8:107738472-1077631695'pad=0,hg19_refFlat_OXR1:range=chr8:107738472-1077631695'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_OXR1:range=chr8:107670215-1077631695'pad=0,hg19_refFlat_OXR1:range=chr8:107670215-1077631695'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_OXR1:range=chr8:107371842-1077631695'pad=0,hg19_refFlat_OXR1:range=chr8:107371842-1077631695'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_OXR1:range=chr8:107460251-1077631695'pad=0,hg19_refFlat_OXR1:range=chr8:107460251-1077631695'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30chr15:49030135-49032041"	NA	inter
CUST_39241_PI429285431	7.838303	P	7.6952353	P	1.10425066408477	0	lncRNA	40212-1_{1..963}	n386085|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010aye.1||3.1340600|-0.3028876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386085|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010aye.1||3.1340600|-0.3028876	chr15	 23194712	 23195674	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5946_PI429285431	1.0940053	A	0.8989132	A	1.14479724081142	0	lncRNA	5875-1_{1..2504}	"transcript_id ""ENST00000588041.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588041.1"" | genecode_v17"	chr17	 67547499	 67550002	+	ENSG00000267194.1	ENST00000588041.1	RP1-193H18.2	RP1-193H18.2-001	MAP2K6	NA	chr17:67537499-67538470	inter
CUST_51688_PI429285431	3.7375748	P	2.8857307	A	1.80480641403601	0	lncRNA	55250-1_{1..474}	hg19_lincRNAsTranscripts_TCONS_l2_00011483 range=chr17:76495151-76497538 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011483 range=chr17:76495151-76497538 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 76495151	 76495624	-	NA	NA	NA	NA	DNAH17	NA	chr17:76485151-76507538	inner
LNCA_21_P0010195	0.9105194	A	0.95630234	A	0.968763933181787	0	lncRNA	AB075497	NA	AB075497	NA	Hs.722615	XLOC_014038	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014038), lincRNA [TCONS_00028904]"	chr21:26934881-26934822	hs|21q21.3	Agilent_HUMAN_G3V2	AB075497	AB075497	chr21	 26934822	 26934881	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007442	4.2062893	P	4.530528	P	0.798719753952554	0	lncRNA	TCONS_00019945	NA	NA	NA	NA	XLOC_009202	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009202), lincRNA [TCONS_00019945]"	chr11:71832275-71832334	hs|11q13.4	Agilent_HUMAN_G3V2	TCONS_00019945	TCONS_00019945	chr11	 71832275	 71832334	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012092	0.908097	A	0.8995679	A	1.00592943151503	0	lncRNA	AK123815	NA	AK123815	NA	Hs.531334	XLOC_l2_008273	NA	ENST00000419362	THC2489462	NA	"BROAD Institute lincRNA (XLOC_l2_008273), lincRNA [TCONS_l2_00015976]"	chr2:132722387-132722328	hs|2q21.2	Agilent_HUMAN_G3V2	AK123815	AK123815	chr2	132722328	132722387	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44411_PI429285431	1.1067559	A	1.3974625	A	0.817501566372834	0	lncRNA	49025-1_{1..2014}	"gi|226442715|ref|NR_027475.1| Homo sapiens alanine-glyoxylate aminotransferase 2-like 1 (AGXT2L1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226442715|ref|NR_027475.1| Homo sapiens alanine-glyoxylate aminotransferase 2-like 1 (AGXT2L1), transcript variant 5, non-coding RNA"	Chr4	109663196	109665209	-	64850	NR_027475.1	NA	NA	NA	NA	NA	inter
CUST_32052_PI429285431	0.9127958	A	0.905339	A	1.00518204046182	0	lncRNA	33767-1_{1..2795}	n338616|BC025398|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1022|NULL|-0.7864580|-0.2547598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338616|BC025398|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1022|NULL|-0.7864580|-0.2547598	chr1	247681164	247683958	+	NA	NA	NA	NA	OR2C3	NA	chr1:247693434-247693943	inter
CUST_13235_PI429285431	0.89091694	A	0.887183	A	1.00259152218671	0	lncRNA	14863-1_{1..239}	lnc-DUSP19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DUSP19-1:1	chr2	183983319	183983557	+	lnc-DUSP19-1	lnc-DUSP19-1:1	XLOC_001778	linc-NUP35	NUP35	NA	chr2:183989083-183993470	inter
CUST_44206_PI429285431	0.9069348	A	1.667346	A	0.590328050181328	0	lncRNA	48860-1_{1..615}	"gi|255683377|ref|NR_028303.1| Homo sapiens uncharacterized LOC100302640 (LOC100302640), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|255683377|ref|NR_028303.1| Homo sapiens uncharacterized LOC100302640 (LOC100302640), non-coding RNA"	Chr3	106828637	106829251	-	100302640	NR_028303.1	NA	NA	NA	NA	NA	inter
CUST_24241_PI429285431	1.3470773	A	1.1300201	A	1.16236019188319	0	lncRNA	25792-1_{1..599}	lnc-SNX9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-SNX9-1:1	chr6	158423206	158423804	+	lnc-SNX9-1	lnc-SNX9-1:1	ENSG00000233496.1	SYNJ2-IT1	SYNJ2	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80chr6:158413206-158433415"	NA	inner
CUST_4141_PI429285431	4.6484423	P	4.067384	P	1.49594620904626	0	lncRNA	4100-1_{1..604}	"transcript_id ""ENST00000540533.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000540533.1"" | genecode_v17"	chr12	  5127631	  5128234	+	ENSG00000256790.1	ENST00000540533.1	RP11-429A20.3	RP11-429A20.3-001	NA	NA	NA	inter
CUST_12795_PI429285431	3.3545372	P	3.488611	P	0.911254664885046	0	lncRNA	14422-1_{1..1600}	lnc-GPR26-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-GPR26-4:1	chr10	125277140	125278739	+	lnc-GPR26-4	lnc-GPR26-4:1	XLOC_008652	linc-GPR26-3	NA	NA	NA	inter
CUST_12347_PI429285431	1.4590244	A	1.2472435	A	1.15811691130565	0	lncRNA	13959-1_{1..784}	lnc-IL16-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL16-2:1	chr15	 81701456	 81702239	+	lnc-IL16-2	lnc-IL16-2:1	XLOC_011329	linc-FAM154B-3	NA	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70"	NA	inter
CUST_25151_PI429285431	4.771555	P	5.1597786	P	0.764069829772305	0	lncRNA	26689-1_{1..861}	lnc-PGBD5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PGBD5-2:1	chr1	230404049	230404909	-	lnc-PGBD5-2	lnc-PGBD5-2:1	ENSG00000227006.1	RP5-956O18.2	GALNT2	NA	chr1:230394049-230414229	inner
CUST_18843_PI429285431	8.150026	P	8.094157	P	1.03948504327721	0	lncRNA	20538-1_{1..3000}	lnc-ARHGAP21-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARHGAP21-1:1	chr10	 24540120	 24543119	-	lnc-ARHGAP21-1	lnc-ARHGAP21-1:1	ENSG00000228508	RP11-183E9.3	KIAA1217	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr10:24530120-24550350"	NA	inner
CUST_49649_PI429285431	4.902104	P	4.1267495	P	1.71161057780445	0	lncRNA	53432-1_{1..1315}	hg19_lincRNAsTranscripts_TCONS_l2_00026649 range=chr7:65865910-65944086 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026649 range=chr7:65865910-65944086 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 65865910	 65867224	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20625_PI429285431	0.89394325	A	1.3026414	A	0.753302827726216	0	lncRNA	22264-1_{1..491}	lnc-CTNNA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTNNA2-1:1	chr2	 79412364	 79412854	+	lnc-CTNNA2-1	lnc-CTNNA2-1:1	ENSG00000224879.1	AC011754.1	NA	"hg19_refFlat_REG3A:range=chr2:79384352-793865315'pad=0,hg19_refFlat_REG3A:range=chr2:79384352-793865315'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_REG3G:range=chr2:79253220-792554025'pad=0,hg19_refFlat_REG3G:range=chr2:79253220-792554025'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50"	NA	inter
CUST_35536_PI429285431	1.783935	A	1.0996625	A	1.60689147870281	0	lncRNA	36953-1_{1..522}	n342660|AX721273|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5162|NULL|-0.7498420|-0.1555174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342660|AX721273|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5162|NULL|-0.7498420|-0.1555174	chr17	 15947765	 15948286	-	NA	NA	NA	NA	NCOR1	"hg19_refFlat_RPLP1:range=chr15:69745288-697478465'pad=0,hg19_refFlat_RPLP1:range=chr15:69745288-697478465'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.90chr17:15937765-15958278"	NA	inner
CUST_13324_PI429285431	1.2723768	A	0.8982146	A	1.29608667428753	0	lncRNA	14959-1_{1..2730}	lnc-CD300C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD300C-2:1	chr17	 72553686	 72556415	-	lnc-CD300C-2	lnc-CD300C-2:1	XLOC_012575	linc-CD300C	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90"	NA	inter
CUST_50607_PI429285431	0.92131156	A	1.0808015	A	0.895341559987812	0	lncRNA	54293-2_{3001..5068}	hg19_lincRNAsTranscripts_TCONS_l2_00002835 range=chr10:973603-988855 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002835 range=chr10:973603-988855 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	   976603	   978670	+	NA	NA	NA	NA	NA	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.21;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00"	NA	inner
CUST_51794_PI429285431	2.7226498	A	3.2330668	P	0.702019495159209	0	lncRNA	55343-1_{1..481}	hg19_lincRNAsTranscripts_TCONS_l2_00012896 range=chr19:17547493-17559102 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012896 range=chr19:17547493-17559102 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 17547493	 17547973	-	NA	NA	NA	NA	TMEM221	NA	chr19:17546318-17559376	inner
CUST_10541_PI429285431	1.050293	A	0.9122575	A	1.10040568641301	0	lncRNA	12069-1_{1..1200}	lnc-ODZ4-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ODZ4-4:2	chr11	 80473021	 80474220	-	lnc-ODZ4-4	lnc-ODZ4-4:2	XLOC_009515	linc-ODZ4-3	NA	NA	NA	inter
CUST_40705_PI429285431	0.9129866	A	0.9131007	A	0.999920915034079	0	lncRNA	41444-1_{1..1333}	n410267|NR_037175_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037175_4||0.0102183|-0.2863054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410267|NR_037175_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037175_4||0.0102183|-0.2863054	chr6	  4098866	  4100198	+	NA	NA	NA	NA	C6orf201	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80chr6:4088866-4111281"	NA	inner
CUST_13509_PI429285431	5.012686	P	5.197158	P	0.879971070315052	0	lncRNA	15149-1_{1..451}	lnc-HSCB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HSCB-2:1	chr22	 28117299	 28117749	+	lnc-HSCB-2	lnc-HSCB-2:1	XLOC_014200	linc-HSCB-3	NA	NA	NA	inter
CUST_2269_PI429285431	0.9027401	A	0.89280856	A	1.00690776827372	0	lncRNA	2261-1_{1..406}	"transcript_id ""ENST00000513926.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513926.1"" | genecode_v17"	chr5	 95583480	 95583885	+	ENSG00000250158.1	ENST00000513926.1	RP11-254I22.2	RP11-254I22.2-001	NA	NA	NA	inter
CUST_22989_PI429285431	3.4837475	P	3.2075438	P	1.21100405848471	0	lncRNA	24563-1_{1..351}	lnc-WRAP73-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WRAP73-3:1	chr1	  3630751	  3631101	-	lnc-WRAP73-3	lnc-WRAP73-3:1	ENSG00000235131.1	RP5-1092A11.2	TP73	NA	chr1:3620751-3640862	inner
LNCA_21_P0007046	4.8701324	P	5.217949	P	0.785772400215108	0	lncRNA	TCONS_00018678	NA	NA	NA	NA	XLOC_008381	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008381), lincRNA [TCONS_00018678]"	chr10:8095224-8095283	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018678	TCONS_00018678	chr10	  8095224	  8095283	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6387_PI429285431	4.0606613	P	4.349528	P	0.81854480878802	0	lncRNA	6316-1_{1..2409}	"transcript_id ""ENST00000594927.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594927.1"" | genecode_v17"	chr19	 21770234	 21772642	-	ENSG00000268240.1	ENST00000594927.1	RP11-678G14.4	RP11-678G14.4-001	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60"	NA	inter
CUST_47213_PI429285431	9.834261	P	9.763188	P	1.05049769758072	0	lncRNA	51288-1_{1..2245}	"gi|343183409|ref|NR_027700.2| Homo sapiens NOP56 ribonucleoprotein homolog (yeast) (NOP56), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|343183409|ref|NR_027700.2| Homo sapiens NOP56 ribonucleoprotein homolog (yeast) (NOP56), transcript variant 2, non-coding RNA"	Chr20	  2633178	  2635422	+	10528	NR_027700.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0001700	0.91285163	A	0.9027532	A	1.00702425343005	0	lncRNA	TCONS_00002142	NA	NA	NA	NA	XLOC_000363	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000363), lincRNA [TCONS_00002142]"	chr1:117647443-117647502	hs|1p13.1	Agilent_HUMAN_G3V2	TCONS_00002142	TCONS_00002142	chr1	117647443	117647502	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24999_PI429285431	5.141824	P	5.4306116	P	0.818589689145644	0	lncRNA	26540-1_{1..1947}	lnc-BIVM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BIVM-1:1	chr13	103396272	103398218	+	lnc-BIVM-1	lnc-BIVM-1:1	ENSG00000231633.1	LINC00283	C13orf40	"hg19_refFlat_CCDC168:range=chr13:103381801-1034112825'pad=0,hg19_refFlat_CCDC168:range=chr13:103381801-1034112825'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60chr13:103386272-103407574"	NA	inner
CUST_34410_PI429285431	1.4465342	A	1.6382775	A	0.875547102702998	0	lncRNA	35891-2_{3001..3255}	n341280|BC044852|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3749|NULL|0.0356452|-0.2630828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341280|BC044852|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3749|NULL|0.0356452|-0.2630828	chr7	 97755599	 97755853	-	NA	NA	NA	NA	LMTK2	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20chr7:97742599-97765814"	NA	inner
CUST_32620_PI429285431	2.6218202	A	1.8099414	A	1.75549611078191	0	lncRNA	34279-1_{1..440}	n339243|AF147447|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1675|NULL|-1.0561600|-0.1928575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339243|AF147447|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1675|NULL|-1.0561600|-0.1928575	chr16	 66978562	 66979001	-	NA	NA	NA	NA	CES2	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.80chr16:66968562-66978999"	NA	inter
CUST_45646_PI429285431	7.477927	P	7.0357594	P	1.35864411106144	0	lncRNA	50023-1_{1..2103}	"gi|393185918|ref|NR_072985.1| Homo sapiens chromosome 10 open reading frame 57 (C10orf57), transcript variant 11, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393185918|ref|NR_072985.1| Homo sapiens chromosome 10 open reading frame 57 (C10orf57), transcript variant 11, non-coding RNA"	Chr10	 81839001	 81841103	+	80195	NR_072985.1	NA	NA	NA	NA	NA	inter
CUST_27176_PI429285431	0.9100638	A	0.90167856	A	1.0058291291025	0	lncRNA	28715-1_{1..449}	n324304|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043187|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043187|-0.3311050|-0.2719578	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324304|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043187|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043187|-0.3311050|-0.2719578	chr6	168337886	168338334	+	NA	NA	NA	NA	MLLT4	NA	chr6:168327886-168358030	inner
LNCA_21_P0005285	1.6004262	A	2.5682023	A	0.511293609693853	0	lncRNA	ENST00000425322	NA	NA	NA	NA	XLOC_006361	NA	ENST00000425322	NA	NA	"BROAD Institute lincRNA (XLOC_006361), lincRNA [TCONS_00013125]"	chr7:15880981-15880922	hs|7p21.2	Agilent_HUMAN_G3V2	ENST00000425322	ENST00000425322	chr7	 15880922	 15880981	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001142	12.885541	P	13.768851	P	0.542122203057592	0	lncRNA	ENST00000433521	NA	NA	NA	NA	XLOC_000872	NA	ENST00000433521	NA	NA	"BROAD Institute lincRNA (XLOC_000872), lincRNA [TCONS_00000549]"	chr1:76186074-76176294	hs|1p31.1	Agilent_HUMAN_G3V2	ENST00000433521	ENST00000433521	chr1	 76176294	 76186074	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002997	1.0480552	A	0.9094934	A	1.10080719133674	0	lncRNA	TCONS_00006125	NA	NA	NA	NA	XLOC_002727	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002727), lincRNA [TCONS_00006125]"	chr3:88517245-88517304	hs|3p11.1	Agilent_HUMAN_G3V2	TCONS_00006125	TCONS_00006125	chr3	 88517245	 88517304	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15597_PI429285431	0.91149044	A	0.9158909	A	0.996954480589555	0	lncRNA	17284-1_{1..429}	lnc-C20orf197-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf197-2:1	chr20	 59055612	 59056040	+	lnc-C20orf197-2	lnc-C20orf197-2:1	XLOC_013593	linc-CDH4-2	NA	NA	NA	inter
CUST_17428_PI429285431	0.9141547	A	1.3355954	A	0.746678605829923	0	lncRNA	19152-1_{1..294}	lnc-MBOAT1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBOAT1-3:2	chr6	 19749879	 19750172	-	lnc-MBOAT1-3	lnc-MBOAT1-3:2	XLOC_005633	linc-DEK-3	NA	NA	NA	inter
LNCA_21_P0014651	4.40182	P	4.376719	P	1.0175509261773	0	lncRNA	XR_110904	XR_110904	XR_110904	NA	NA	LOC100129203	uncharacterized LOC100129203	NA	THC2641240	NA	"PREDICTED: Homo sapiens hypothetical LOC100129203 (LOC100129203), miscRNA [XR_110904]"	chr11:94967207-94967266	hs|11q21	Agilent_HUMAN_G3V2	XR_110904	XR_110904	chr11	 94967207	 94967266	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20256_PI429285431	3.24678	P	3.2394104	A	1.00512128664861	0	lncRNA	21899-1_{1..469}	lnc-KCNG4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNG4-3:1	chr16	 84376677	 84377145	-	lnc-KCNG4-3	lnc-KCNG4-3:1	ENSG00000260504.1	RP11-558A11.3	NA	NA	NA	inter
CUST_43475_PI429285431	8.751305	P	8.526595	P	1.16854233312271	0	lncRNA	48275-1_{1..1924}	"gi|307691202|ref|NR_036639.1| Homo sapiens Yip1 domain family, member 1 (YIPF1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|307691202|ref|NR_036639.1| Homo sapiens Yip1 domain family, member 1 (YIPF1), transcript variant 2, non-coding RNA"	Chr1	 54317392	 54319315	-	54432	NR_036639.1	NA	NA	NA	NA	NA	inter
CUST_50192_PI429285431	5.276314	P	6.497634	P	0.42889012378959	0	lncRNA	53917-1_{1..434}	hg19_lincRNAsTranscripts_TCONS_l2_00028736 range=chr9:40301941-40307602 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028736 range=chr9:40301941-40307602 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 40301941	 40302374	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6699_PI429285431	4.9653416	P	5.4981737	P	0.691196539630226	0	lncRNA	6648-1_{1..1482}	"transcript_id ""ENST00000442383.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442383.1"" | genecode_v17"	chr20	 42839722	 42841203	+	ENSG00000223891.1	ENST00000442383.1	RP5-995J12.2	RP5-995J12.2-001	C20orf111	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20chr20:42829722-42839546"	NA	inter
CUST_51622_PI429285431	8.175675	P	8.235627	P	0.959296035594753	0	lncRNA	55193-1_{1..2591}	hg19_lincRNAsTranscripts_TCONS_l2_00011246 range=chr17:41446322-41449119 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011246 range=chr17:41446322-41449119 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 41446322	 41448912	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00"	NA	inter
CUST_21666_PI429285431	7.46923	P	7.925006	P	0.729117887085976	0	lncRNA	23276-1_{1..459}	lnc-GPR182-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-GPR182-1:1	chr12	 57391975	 57392433	+	lnc-GPR182-1	lnc-GPR182-1:1	ENSG00000258442.1	RP11-474N8.5	ZBTB39	NA	chr12:57392617-57400297	inter
CUST_50736_PI429285431	0.9057875	A	2.138279	A	0.425581841169879	0	lncRNA	54404-1_{1..583}	hg19_lincRNAsTranscripts_TCONS_l2_00004048 range=chr10:124480829-124493914 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004048 range=chr10:124480829-124493914 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	124480829	124481411	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1634_PI429285431	5.238751	P	5.4159102	P	0.884442832536779	0	lncRNA	1619-1_{1..731}	"transcript_id ""ENST00000597034.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597034.1"" | genecode_v17"	chr3	195410621	195411351	+	ENSG00000242086.3	ENST00000597034.1	AC069513.3	AC069513.3-035	NA	NA	NA	inter
CUST_16940_PI429285431	0.9047647	A	0.90403485	A	1.00050602145541	0	lncRNA	18652-1_{1..276}	lnc-RP11-82I10.1.1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-82I10.1.1-4:3	chr15	 98559659	 98559934	-	lnc-RP11-82I10.1.1-4	lnc-RP11-82I10.1.1-4:3	XLOC_011603	linc-RGMA-6	NA	NA	NA	inter
CUST_44915_PI429285431	0.9054434	A	1.1022308	A	0.872491269307721	0	lncRNA	49431-1_{1..1913}	"gi|308522771|ref|NR_036680.1| Homo sapiens dpy-19-like 1 pseudogene 1 (C. elegans) (DPY19L1P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|308522771|ref|NR_036680.1| Homo sapiens dpy-19-like 1 pseudogene 1 (C. elegans) (DPY19L1P1), non-coding RNA"	Chr7	 32620551	 32622463	-	100129460	NR_036680.1	NA	NA	NA	NA	NA	inter
CUST_20509_PI429285431	4.2366304	P	4.8236833	P	0.665701396574121	0	lncRNA	22151-1_{1..409}	lnc-C11orf94-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf94-1:1	chr11	 45927960	 45928368	-	lnc-C11orf94-1	lnc-C11orf94-1:1	ENSG00000255498.1	RP11-618K13.2	MAPK8IP1	NA	chr11:45917960-45928016	inner
CUST_44701_PI429285431	3.7774954	P	3.839394	P	0.958002549184552	0	lncRNA	49258-1_{1..670}	"gi|253795520|ref|NR_028032.1| Homo sapiens HLA complex group 9 (non-protein coding) (HCG9), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|253795520|ref|NR_028032.1| Homo sapiens HLA complex group 9 (non-protein coding) (HCG9), non-coding RNA"	NT_167245.1	  1236226	  1236895	+	10255	NR_028032.1	NA	NA	NA	"hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20"	NA	Unknown
LNCA_33_P3226407	0.9072337	A	0.91850436	A	0.992218209927518	0	lncRNA	XR_132886	XR_132886	XR_132886	   729732	Hs.696467	LOC729732	uncharacterized LOC729732	NA	THC2570043	NA	"PREDICTED: Homo sapiens hypothetical LOC729732 (LOC729732), miscRNA [XR_132886]"	chr8:12453717-12453658	hs|8p23.1	Agilent_HUMAN_G3V2	XR_132886	XR_132886	chr8	 12453658	 12453717	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44294_PI429285431	11.0778885	P	11.827628	P	0.594710931691613	0	lncRNA	48927-1_{1..1424}	"gi|298231214|ref|NR_033721.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 19 (DNAJC19), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298231214|ref|NR_033721.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 19 (DNAJC19), transcript variant 3, non-coding RNA"	Chr3	180701497	180702920	-	131118	NR_033721.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10"	NA	inter
CUST_46595_PI429285431	1.3119653	A	1.3812838	A	0.953088111298144	0	lncRNA	50777-1_{1..1974}	"gi|310123454|ref|XR_109256.1| PREDICTED: Homo sapiens hCG1983896 (FLJ32790), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123454|ref|XR_109256.1| PREDICTED: Homo sapiens hCG1983896 (FLJ32790), misc_RNA"	Chr16	 12180527	 12182500	-	642696	XR_109256.2	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80"	NA	inter
LNCA_21_P0001720	2.140414	A	2.5414484	A	0.757315100102771	0	lncRNA	TCONS_00002290	NA	NA	NA	NA	XLOC_000702	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000702), lincRNA [TCONS_00002290]"	chr1:11434587-11434528	hs|1p36.22	Agilent_HUMAN_G3V2	TCONS_00002290	TCONS_00002290	chr1	 11434528	 11434587	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4251_PI429285431	2.2905202	A	3.1333747	A	0.557539335995626	0	lncRNA	4208-1_{1..566}	"transcript_id ""ENST00000547523.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547523.1"" | genecode_v17"	chr12	 48624881	 48625446	-	ENSG00000258234.1	ENST00000547523.1	RP11-370I10.2	RP11-370I10.2-001	NA	NA	NA	inter
CUST_49528_PI429285431	4.149206	P	4.4390593	P	0.817985230904797	0	lncRNA	53320-1_{1..360}	hg19_lincRNAsTranscripts_TCONS_l2_00024768 range=chr6:44047377-44072432 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024768 range=chr6:44047377-44072432 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 44047377	 44047736	-	NA	NA	NA	NA	MRPL14	NA	chr6:44056862-44082432	inter
LNCA_21_P0001422	0.9199413	A	0.92484444	A	0.996607171029151	0	lncRNA	TCONS_00001276	NA	NA	NA	NA	XLOC_000565	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000565), lincRNA [TCONS_00001276]"	chr1:219098141-219098200	hs|1q41	Agilent_HUMAN_G3V2	TCONS_00001276	TCONS_00001276	chr1	219098141	219098200	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28892_PI429285431	0.89941007	A	0.90239644	A	0.997932147014346	0	lncRNA	30608-1_{1..444}	n326315|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000085149|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000085149|-1.0730700|-0.3256418	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326315|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000085149|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000085149|-1.0730700|-0.3256418	chr1	179143559	179144002	+	NA	NA	NA	NA	ABL2	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-20.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50chr1:179133559-179154701"	NA	inner
CUST_2729_PI429285431	0.91043675	A	0.90517354	A	1.00365484187762	0	lncRNA	2714-1_{1..806}	"transcript_id ""ENST00000448824.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448824.1"" | genecode_v17"	chr6	171004401	171005206	+	ENSG00000234986.1	ENST00000448824.1	XX-C2158C12.1	XX-C2158C12.1-001	NA	NA	NA	inter
CUST_30174_PI429285431	1.1976832	A	0.91679573	A	1.21494202291083	0	lncRNA	31948-1_{1..520}	n334866|AJ315537|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247165_09|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247165_09|-1.1441500|-0.4522836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334866|AJ315537|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247165_09|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247165_09|-1.1441500|-0.4522836	chr6	  2976772	  2977291	+	NA	NA	NA	NA	SERPINB6	NA	chr6:2966772-2972399	inter
CUST_13213_PI429285431	4.2654247	P	4.561226	P	0.814619751574277	0	lncRNA	14841-1_{1..285}	lnc-APLN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APLN-1:1	chrX	128812106	128812390	-	lnc-APLN-1	lnc-APLN-1:1	XLOC_008233	linc-APLN-1	NA	NA	NA	inter
CUST_51359_PI429285431	4.14511	P	3.8415904	P	1.23415158091395	0	lncRNA	54955-1_{1..1425}	hg19_lincRNAsTranscripts_TCONS_l2_00008794 range=chr15:84908541-84911002 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008794 range=chr15:84908541-84911002 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 84908541	 84909965	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_16300_PI429285431	0.92202866	A	0.93009347	A	0.994425495223767	0	lncRNA	18006-1_{1..218}	lnc-CTNNA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTNNA2-2:1	chr2	 81929576	 81929793	+	lnc-CTNNA2-2	lnc-CTNNA2-2:1	XLOC_001545	linc-DNAH6-5	NA	NA	NA	inter
LNCA_21_P0010261	1.3631363	A	1.3750668	A	0.991764506582134	0	lncRNA	THC2775863	NA	NA	NA	NA	XLOC_013968	NA	NA	THC2775863	NA	"BROAD Institute lincRNA (XLOC_013968), lincRNA [TCONS_00029050]"	chr21:045629888-045629947	hs|21q22.3	Agilent_HUMAN_G3V2	THC2775863	THC2775863	chr21	 45629888	 45629947	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36632_PI429285431	0.89968485	A	1.2128785	A	0.8048580959167	0	lncRNA	37825-1_{1..1033}	n345128|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_677|NULL|-1.3187800|-0.3805433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345128|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_677|NULL|-1.3187800|-0.3805433	chr10	120435923	120436955	+	NA	NA	NA	NA	C10orf46	NA	chr10:120440494-120446963	inter
CUST_21700_PI429285431	5.4978986	P	5.5542455	P	0.961696184362233	0	lncRNA	23311-1_{1..368}	lnc-ANXA9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANXA9-1:1	chr1	150947789	150948156	+	lnc-ANXA9-1	lnc-ANXA9-1:1	ENSG00000231073.1	RP11-316M1.3	ANXA9	NA	chr1:150954499-150958010	inter
CUST_21953_PI429285431	0.92884594	A	0.982926	A	0.963208440861095	0	lncRNA	23561-1_{1..546}	lnc-CHMP4C-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHMP4C-5:1	chr8	 82433942	 82434487	+	lnc-CHMP4C-5	lnc-CHMP4C-5:1	ENSG00000253859.2	RP11-157I4.4	FABP12	"hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0,hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_FTH1:range=chr11:61732199-617348975'pad=0,hg19_refFlat_FTH1:range=chr11:61732199-617348975'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60chr8:82433755-82443550"	NA	inter
CUST_12440_PI429285431	1.0773612	A	0.9003736	A	1.13052085022782	0	lncRNA	14053-1_{1..450}	lnc-C16orf95-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C16orf95-2:1	chr16	 87187944	 87188393	-	lnc-C16orf95-2	lnc-C16orf95-2:1	XLOC_012051	linc-MTHFSD-4	NA	NA	NA	inter
CUST_8089_PI429285431	1.3248638	A	0.9196882	A	1.32425008386368	0	lncRNA	9695-1_{1..854}	lnc-SWAP70-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SWAP70-1:3	chr11	  9812416	  9813269	+	lnc-SWAP70-1	lnc-SWAP70-1:3	ENSG00000246273	RP11-540A21.3	SBF2	"hg19_refFlat_SBF2:range=chr11:9801965-103156165'pad=0,hg19_refFlat_SBF2:range=chr11:9801965-103156165'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50chr11:9802416-9822791"	NA	inner
CUST_37935_PI429285431	1.485074	A	0.9618131	A	1.43720005932048	0	lncRNA	39025-1_{1..2076}	n346480|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2030|NULL|-1.2367500|-0.3209255	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346480|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2030|NULL|-1.2367500|-0.3209255	chr2	 18479048	 18481123	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29100_PI429285431	0.90623516	A	0.9100599	A	0.997352403335331	0	lncRNA	30833-1_{1..306}	n326598|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023038|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023038|-1.2949700|-0.3477666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326598|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023038|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023038|-1.2949700|-0.3477666	chr1	 59258847	 59259152	+	NA	NA	NA	NA	JUN	NA	chr1:59248847-59249785	inter
CUST_12892_PI429285431	4.366292	P	3.9464395	P	1.33779077312338	0	lncRNA	14520-1_{1..506}	lnc-ZNF705D-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF705D-3:6	chr8	 12302265	 12302770	+	lnc-ZNF705D-3	lnc-ZNF705D-3:6	XLOC_006721	linc-C8orf79-2	LOC100127885	NA	chr8:12295164-12312380	inter
CUST_29744_PI429285431	6.0527425	P	5.1134615	P	1.91757233453467	0	lncRNA	31506-1_{1..590}	n333419|BC012067|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087777|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087777|1.7290800|-0.0784715	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333419|BC012067|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087777|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087777|1.7290800|-0.0784715	chr4	 48343588	 48344177	+	NA	NA	NA	NA	SLAIN2	NA	chr4:48343613-48354178	inner
CUST_6321_PI429285431	4.0131865	P	4.360915	P	0.785820385867129	0	lncRNA	6244-1_{1..103}	"transcript_id ""ENST00000593563.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593563.1"" | genecode_v17"	chr19	  6393820	  6393922	+	ENSG00000214347.5	ENST00000593563.1	CTB-180A7.8	CTB-180A7.8-002	KHSRP	NA	chr19:6413115-6421788	inter
LNCA_21_P0007812	3.5383444	P	3.6041312	P	0.95542411755088	0	lncRNA	TCONS_00021010	NA	NA	NA	NA	XLOC_010272	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010272), lincRNA [TCONS_00021010]"	chr12:132377912-132377853	hs|12q24.33	Agilent_HUMAN_G3V2	TCONS_00021010	TCONS_00021010	chr12	132377853	132377912	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25987_PI429285431	4.5995135	P	4.4387636	P	1.11786804491201	0	lncRNA	27506-1_{1..575}	lnc-AC090186.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC090186.1-1:4	chr8	 52825617	 52826191	+	lnc-AC090186.1-1	lnc-AC090186.1-1:4	ENSG00000228801.4	RP11-110G21.1	LOC100287313	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70chr8:52815617-52835698"	NA	inter
CUST_24249_PI429285431	3.0358238	A	3.7725341	P	0.600106183253539	0	lncRNA	25800-1_{1..603}	lnc-NDUFS8-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFS8-1:13	chr11	 67791676	 67792278	+	lnc-NDUFS8-1	lnc-NDUFS8-1:13	ENSG00000006534.11	ALDH3B1	ALDH3B1	NA	chr11:67781676-67796743	inner
CUST_10927_PI429285431	1.8889996	A	2.1775498	A	0.818724401733295	0	lncRNA	12468-1_{1..2241}	lnc-THRB-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-THRB-1:2	chr3	 24144071	 24146311	-	lnc-THRB-1	lnc-THRB-1:2	XLOC_003068	linc-NKIRAS1-2	NA	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_25796_PI429285431	5.0578175	P	4.873862	P	1.13599422444815	0	lncRNA	27317-1_{1..596}	lnc-AGR3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGR3-1:2	chr7	 17337976	 17338571	-	lnc-AGR3-1	lnc-AGR3-1:2	ENSG00000237773.1	AC003075.4	AHR	NA	chr7:17338276-17348083	inter
CUST_21703_PI429285431	2.078092	A	2.1740484	A	0.935651773939493	0	lncRNA	23314-1_{1..484}	lnc-HABP4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HABP4-1:1	chr9	 99265582	 99266065	+	lnc-HABP4-1	lnc-HABP4-1:1	ENSG00000234687.1	RP11-172F4.5	CDC14B	NA	chr9:99262395-99275812	inner
CUST_14384_PI429285431	0.8926129	A	0.89274323	A	0.9999096662083	0	lncRNA	16045-1_{1..785}	lnc-VWA5A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VWA5A-1:1	chr11	123947003	123947787	+	lnc-VWA5A-1	lnc-VWA5A-1:1	XLOC_009313	linc-VWA5A	NA	NA	NA	inter
CUST_13893_PI429285431	0.8949736	A	2.1925344	A	0.40681342652646	0	lncRNA	15538-1_{1..366}	lnc-C8orf37-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C8orf37-1:1	chr8	 96228546	 96228911	-	lnc-C8orf37-1	lnc-C8orf37-1:1	XLOC_007164	linc-TP53INP1	NA	NA	NA	inter
CUST_31492_PI429285431	0.92749614	A	1.4560965	A	0.693226946568976	0	lncRNA	33256-1_{1..556}	n337973|BC042048|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|359|NULL|-1.1032400|-0.3761324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337973|BC042048|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|359|NULL|-1.1032400|-0.3761324	chr1	 60238466	 60239021	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29893_PI429285431	0.8951109	A	1.0674478	A	0.887404085329134	0	lncRNA	31656-1_{1..282}	n333965|M14189|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194306_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194306_05|-1.3631000|-0.5029142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333965|M14189|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194306_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194306_05|-1.3631000|-0.5029142	chr6	  3864671	  3864952	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4468_PI429285431	8.706907	P	8.399392	P	1.23757417768744	0	lncRNA	4417-2_{3001..4972}	"transcript_id ""ENST00000502479.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502479.1"" | genecode_v17"	chr12	126446248	126448219	-	ENSG00000249267.2	ENST00000502479.1	RP5-916L7.1	RP5-916L7.1-001	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50"	NA	inter
CUST_1100_PI429285431	0.88852656	A	1.3445134	A	0.729011339285912	0	lncRNA	1089-1_{1..693}	"transcript_id ""ENST00000595686.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595686.1"" | genecode_v17"	chr2	145425557	145426249	+	ENSG00000226674.3	ENST00000595686.1	AC074093.1	AC074093.1-033	NA	NA	NA	inter
CUST_37199_PI429285431	3.949258	P	3.8510633	P	1.07043314979417	0	lncRNA	38311-1_{1..2538}	n345631|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1180|NULL|-1.3177800|-0.2580050	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345631|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1180|NULL|-1.3177800|-0.2580050	chr4	 24665874	 24668411	+	NA	NA	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	inter
CUST_47358_PI429285431	1.6133015	A	0.9264189	A	1.60980127156251	0	lncRNA	51409-1_{1..3000}	"gi|393715114|ref|NR_072999.1| Homo sapiens junctional adhesion molecule 2 (JAM2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393715114|ref|NR_072999.1| Homo sapiens junctional adhesion molecule 2 (JAM2), transcript variant 4, non-coding RNA"	Chr21	 27011594	 27014593	+	58494	NR_072999.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60"	NA	inter
CUST_40674_PI429285431	2.0749526	A	1.0633217	A	2.01618902074145	0	lncRNA	41409-1_{1..1057}	n410230|NR_037170_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037170_7||-1.0958700|-0.3504127	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410230|NR_037170_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037170_7||-1.0958700|-0.3504127	chr6	  3500401	  3501457	-	NA	NA	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50"	NA	inter
CUST_27755_PI429285431	1.6317216	A	1.2379783	A	1.31379784114345	0	lncRNA	29336-1_{1..508}	n324971|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079619|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079619|-0.9731590|-0.1506123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324971|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079619|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079619|-0.9731590|-0.1506123	chr20	 46417363	 46417870	+	NA	NA	NA	NA	SULF2	NA	chr20:46407363-46415360	inter
CUST_45480_PI429285431	1.1649939	A	2.4172106	A	0.419802685276301	0	lncRNA	49895-1_{1..1107}	"gi|219279764|ref|NR_024628.1| Homo sapiens IDI2 antisense RNA 1 (IDI2-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|219279764|ref|NR_024628.1| Homo sapiens IDI2 antisense RNA 1 (IDI2-AS1), transcript variant 1, non-coding RNA"	Chr10	  1068577	  1069683	+	55853	NR_024628.1	NA	NA	NA	"hg19_refFlat_IDI2:range=chr10:1065457-10706635'pad=0,hg19_refFlat_IDI2:range=chr10:1065457-10706635'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_IDI1:range=chr10:1087127-10949435'pad=0,hg19_refFlat_IDI1:range=chr10:1087127-10949435'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70"	NA	inter
CUST_33804_PI429285431	0.90803266	A	0.8950292	A	1.00905405384526	0	lncRNA	35356-1_{1..3000}	n340593|BX649078|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3055|NULL|-1.2906400|-0.3945556	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n340593|BX649078|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3055|NULL|-1.2906400|-0.3945556	chr5	115703112	115706111	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51795_PI429285431	9.667518	P	9.517607	P	1.10950102472847	0	lncRNA	55344-1_{1..2768}	hg19_lincRNAsTranscripts_TCONS_l2_00012362 range=chr19:18133184-18144152 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012362 range=chr19:18133184-18144152 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 18133184	 18135951	+	NA	NA	NA	NA	ARRDC2	NA	chr19:18123184-18124911	inter
LNCA_21_P0012269	3.4309142	P	3.7975492	P	0.775589404654322	0	lncRNA	TCONS_l2_00017736	NA	NA	NA	NA	XLOC_l2_009358	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009358), lincRNA [TCONS_l2_00017736]"	chr22:32426362-32426421	hs|22q12.3	Agilent_HUMAN_G3V2	TCONS_l2_00017736	TCONS_l2_00017736	chr22	 32426362	 32426421	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44690_PI429285431	1.2153608	A	1.7200317	A	0.704821139323165	0	lncRNA	49249-1_{1..3000}	"gi|393250349|ref|NR_024063.2| Homo sapiens zinc finger and SCAN domain containing 12 pseudogene 1 (ZSCAN12P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|393250349|ref|NR_024063.2| Homo sapiens zinc finger and SCAN domain containing 12 pseudogene 1 (ZSCAN12P1), non-coding RNA"	Chr6	 28058585	 28061584	+	221584	NR_024063.2	NA	NA	NA	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70"	NA	inter
CUST_31809_PI429285431	1.6446888	A	1.7140436	A	0.953064130718597	0	lncRNA	33546-1_{1..2118}	n338351|BX248779|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|745|NULL|10.1680000|-0.1146489	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338351|BX248779|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|745|NULL|10.1680000|-0.1146489	chr14	 65171153	 65173270	+	NA	NA	NA	NA	SPTB	NA	chr14:65213001-65218213	inner
CUST_34097_PI429285431	1.7609764	A	3.4422305	P	0.311811469193555	0	lncRNA	35622-1_{1..1890}	n340919|AK054933|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3384|NULL|-0.7887170|-0.1668258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340919|AK054933|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3384|NULL|-0.7887170|-0.1668258	chr17	 79374889	 79376778	+	NA	NA	NA	NA	BAHCC1	NA	chr17:79373540-79386779	inner
CUST_8282_PI429285431	0.909598	A	0.8995668	A	1.00697732690629	0	lncRNA	9866-1_{1..1114}	lnc-SLC30A4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC30A4-1:2	chr15	 45693879	 45694992	-	lnc-SLC30A4-1	lnc-SLC30A4-1:2	ENSG00000230288	RP11-519G16.1	SPATA5L1	NA	chr15:45694519-45704520	inter
LNCA_21_P0009666	0.90730834	A	1.8165807	A	0.532453572658657	0	lncRNA	AK129828	NA	AK129828	NA	Hs.698517	XLOC_013154	NA	NA	THC2622529	NA	"BROAD Institute lincRNA (XLOC_013154), lincRNA [TCONS_00026835]"	chr19:55732371-55732430	hs|19q13.42	Agilent_HUMAN_G3V2	AK129828	AK129828	chr19	 55732371	 55732430	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11224_PI429285431	0.90134025	A	1.0172664	A	0.922789728053729	0	lncRNA	12782-1_{1..423}	lnc-CNIH3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CNIH3-1:2	chr1	224960875	224961297	+	lnc-CNIH3-1	lnc-CNIH3-1:2	XLOC_000584	linc-DNAH14	NA	NA	NA	inter
CUST_48660_PI429285431	1.3694048	A	0.9018235	A	1.38278925667059	0	lncRNA	52504-2_{3001..4376}	hg19_lincRNAsTranscripts_TCONS_l2_00013804 range=chr2:96194609-96199699 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013804 range=chr2:96194609-96199699 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 96197609	 96198984	+	NA	NA	NA	NA	TRIM43	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr2:96191094-96209699"	NA	inter
CUST_21057_PI429285431	0.9142288	A	0.9155541	A	0.999081793851095	0	lncRNA	22684-1_{1..530}	lnc-ANP32A-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANP32A-2:5	chr15	 69578258	 69578787	-	lnc-ANP32A-2	lnc-ANP32A-2:5	ENSG00000261634.1	RP11-352D13.6	NA	NA	NA	inter
LNCA_21_P0008020	1.182625	A	0.9020455	A	1.21468269869418	0	lncRNA	ENST00000418660	NA	NA	NA	NA	XLOC_010727	NA	ENST00000418660	THC2711847	NA	"BROAD Institute lincRNA (XLOC_010727), lincRNA [TCONS_00021697]"	chr13:112760940-112760521	hs|13q34	Agilent_HUMAN_G3V2	ENST00000418660	ENST00000418660	chr13	112760521	112760940	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45444_PI429285431	1.1559572	A	1.4600496	A	0.809951597163268	0	lncRNA	49862-1_{1..3000}	"gi|297374819|ref|NR_033701.1| Homo sapiens allograft inflammatory factor 1-like (AIF1L), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|297374819|ref|NR_033701.1| Homo sapiens allograft inflammatory factor 1-like (AIF1L), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_033701.1	NA	NA	NA	NA	NA	Unknown
CUST_42463_PI429285431	0.8971604	A	2.2444682	A	0.393024785010721	0	lncRNA	45206-1_{1..117}	ENST00000364523 ncrna:snoRNA chromosome:GRCh37:10:80127264:80127380:1 gene:ENSG00000201393 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364523 ncrna:snoRNA chromosome:GRCh37:10:80127264:80127380:1 gene:ENSG00000201393 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	 80127264	 80127380	+	ENSG00000201393	ENST00000364523	NA	NA	NA	NA	NA	inter
CUST_14226_PI429285431	0.9221756	A	1.305644	A	0.766592399767377	0	lncRNA	15883-1_{1..669}	lnc-AC131097.4.1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC131097.4.1-3:3	chr2	243026247	243026915	-	lnc-AC131097.4.1-3	lnc-AC131097.4.1-3:3	XLOC_002560	linc-PDCD1-4	NA	NA	NA	inter
CUST_31261_PI429285431	3.1583505	P	0.90359956	A	4.77251899605831	0	lncRNA	33051-1_{1..2028}	n337716|AK025751|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|98|NULL|12.1117000|-0.3056588	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337716|AK025751|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|98|NULL|12.1117000|-0.3056588	chr15	 41988970	 41990997	+	NA	NA	NA	NA	MGA	NA	chr15:41978970-42031453	inner
CUST_42974_PI429285431	10.239546	P	10.306055	P	0.954945960628402	0	lncRNA	46118-1_{1..104}	ENST00000364043 ncrna:snoRNA chromosome:GRCh37:1:45242162:45242265:1 gene:ENSG00000200913 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364043 ncrna:snoRNA chromosome:GRCh37:1:45242162:45242265:1 gene:ENSG00000200913 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 45242162	 45242265	+	ENSG00000200913	ENST00000364043	NA	NA	KIF2C	NA	chr1:45232162-45233439	inter
LNCA_19_P00315601	5.642149	P	5.320736	P	1.24955378395134	0	lncRNA	TCONS_l2_00030536	NA	NA	NA	NA	XLOC_l2_015760	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015760), lincRNA [TCONS_l2_00030536]"	chrX:73498033-73497974	hs|Xq13.2	Agilent_HUMAN_G3V2	TCONS_l2_00030536	TCONS_l2_00030536	chrX	 73497974	 73498033	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27297_PI429285431	0.90597564	A	0.8997422	A	1.00433003900602	0	lncRNA	28855-1_{1..501}	n324449|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041578|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041578|-1.1958100|-0.4775528	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324449|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041578|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041578|-1.1958100|-0.4775528	chr6	 98256877	 98257377	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001504	5.9749722	P	6.0718827	P	0.93503320230093	0	lncRNA	TCONS_00001494	NA	NA	NA	NA	XLOC_000833	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000833), lincRNA [TCONS_00001494]"	chr1:51442776-51442717	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_00001494	TCONS_00001494	chr1	 51442717	 51442776	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35683_PI429285431	3.5019135	P	3.1772432	P	1.252378199145	0	lncRNA	37103-1_{1..3000}	n342844|BX647470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5347|NULL|-0.7725010|-0.3169784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342844|BX647470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5347|NULL|-0.7725010|-0.3169784	chr8	 72756337	 72759336	+	NA	NA	NA	NA	TRPA1	"hg19_refFlat_TRPA1:range=chr8:72935141-729876445'pad=0,hg19_refFlat_TRPA1:range=chr8:72935141-729876445'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MSC:range=chr8:72754896-727564135'pad=0,hg19_refFlat_MSC:range=chr8:72754896-727564135'pad=0 3'pad=0 strand=- repeatMasking=none,-102.00chr8:72933486-72978547"	NA	inter
CUST_33895_PI429285431	3.5993624	P	4.680938	P	0.472512499843778	0	lncRNA	35439-1_{1..1857}	n340687|AF131813|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3150|NULL|-0.9681260|-0.1893938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340687|AF131813|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3150|NULL|-0.9681260|-0.1893938	chr17	 42980418	 42982274	-	NA	NA	NA	NA	GFAP	NA	chr17:42982994-42992187	inner
CUST_21115_PI429285431	0.9175844	A	0.9149621	A	1.00181929276021	0	lncRNA	22740-1_{1..498}	lnc-POU5F1B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POU5F1B-3:2	chr8	127629634	127630131	+	lnc-POU5F1B-3	lnc-POU5F1B-3:2	ENSG00000254286.1	RP11-89K10.1	NA	NA	NA	inter
CUST_7399_PI429285431	1.4781942	A	1.6770753	A	0.871225991447667	0	lncRNA	9044-1_{1..741}	lnc-RASA1-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASA1-7:3	chr5	 88600567	 88601307	+	lnc-RASA1-7	lnc-RASA1-7:3	ENSG00000248309	CTC-454M9.1	NA	NA	NA	inter
CUST_32467_PI429285431	0.94718564	A	0.93005204	A	1.01194690748832	0	lncRNA	34137-2_{3001..6000}	n339070|CR749843|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1500|NULL|-1.0376300|-0.3445410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339070|CR749843|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1500|NULL|-1.0376300|-0.3445410	chr16	  9850267	  9853266	-	NA	NA	NA	NA	GRIN2A	NA	chr16:9847265-9864556	inner
CUST_13195_PI429285431	3.7769933	P	3.8219628	P	0.969310308897039	0	lncRNA	14822-2_{3001..3206}	lnc-VTI1A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VTI1A-2:1	chr10	114615832	114616037	+	lnc-VTI1A-2	lnc-VTI1A-2:1	XLOC_008618	linc-TCF7L2-2	NA	NA	NA	inter
CUST_36132_PI429285431	0.89653784	A	0.9285682	A	0.978042891346636	0	lncRNA	37418-1_{1..2212}	n344705|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_254|NULL|-1.6325400|-0.2153417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344705|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_254|NULL|-1.6325400|-0.2153417	chr7	 65172700	 65174911	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2343_PI429285431	4.8613586	P	5.4367943	P	0.671083550714745	0	lncRNA	2335-1_{1..675}	"transcript_id ""ENST00000510004.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510004.1"" | genecode_v17"	chr5	123731296	123731970	+	ENSG00000251421.1	ENST00000510004.1	CTC-369A16.2	CTC-369A16.2-001	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50"	NA	inter
CUST_42980_PI429285431	2.530692	A	3.163535	P	0.644904302644442	0	lncRNA	46130-1_{1..69}	ENST00000362704 ncrna:snoRNA chromosome:GRCh37:15:66793588:66793656:-1 gene:ENSG00000199574 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362704 ncrna:snoRNA chromosome:GRCh37:15:66793588:66793656:-1 gene:ENSG00000199574 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 66793588	 66793656	-	ENSG00000199574	ENST00000362704	NA	NA	MAP2K1	NA	chr15:66783588-66783882	inter
LNCA_21_P0009269	0.92481315	A	0.9127933	A	1.00836632888276	0	lncRNA	TCONS_00025479	NA	NA	NA	NA	XLOC_012297	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012297), lincRNA [TCONS_00025479]"	chr17:68916640-68916699	hs|17q24.3	Agilent_HUMAN_G3V2	TCONS_00025479	TCONS_00025479	chr17	 68916640	 68916699	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9957_PI429285431	5.5837417	P	5.9615426	P	0.769609813218797	0	lncRNA	11481-1_{1..589}	lnc-OSBPL1A-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OSBPL1A-7:1	chr18	 22251460	 22252048	-	lnc-OSBPL1A-7	lnc-OSBPL1A-7:1	XLOC_012793	linc-OSBPL1A-1	NA	NA	NA	inter
CUST_47309_PI429285431	3.6776514	P	4.3371253	P	0.633109127464813	0	lncRNA	51371-1_{1..3000}	"gi|386781521|ref|NR_048540.1| Homo sapiens solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 (SLC9A8), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386781521|ref|NR_048540.1| Homo sapiens solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 (SLC9A8), transcript variant 6, non-coding RNA"	Chr20	 48429250	 48432249	+	23315	NR_048540.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014686	2.3463817	A	1.6653526	A	1.60328299762534	0	lncRNA	XR_111617	XR_111617	XR_111617	NA	Hs.659870	LOC100507918	uncharacterized LOC100507918	NA	THC2608420	NA	"PREDICTED: Homo sapiens hypothetical LOC100507918 (LOC100507918), miscRNA [XR_111617]"	chr16:89463788-89463729	hs|16q24.3	Agilent_HUMAN_G3V2	XR_111617	XR_111617	chr16	 89463729	 89463788	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1040_PI429285431	0.91963536	A	0.9049257	A	1.0102481152587	0	lncRNA	1030-1_{1..3000}	"transcript_id ""ENST00000420330.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420330.1"" | genecode_v17"	chr2	118591513	118594512	+	ENSG00000236255.1	ENST00000420330.1	AC009404.2	AC009404.2-003	DDX18	NA	chr2:118581513-118589953	inter
CUST_18547_PI429285431	3.1394367	P	3.5047817	P	0.776283215712846	0	lncRNA	20258-1_{1..2514}	lnc-CR392000.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CR392000.1-2:1	chr9	139010425	139012938	+	lnc-CR392000.1-2	lnc-CR392000.1-2:1	ENSG00000246044	AL138781.1	C9orf69	"hg19_refFlat_C9orf69:range=chr9:139008327-1390087465'pad=0,hg19_refFlat_C9orf69:range=chr9:139008327-1390087465'pad=0 3'pad=0 strand=- repeatMasking=none,-107.10chr9:139006427-139010731"	NA	inner
CUST_10521_PI429285431	3.9415905	P	4.3884516	P	0.733637301920896	0	lncRNA	12049-1_{1..897}	lnc-EXOC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXOC2-1:1	chr6	   730016	   730912	-	lnc-EXOC2-1	lnc-EXOC2-1:1	XLOC_005569	linc-HUS1B-9	NA	NA	NA	inter
CUST_975_PI429285431	3.2526085	P	3.7204382	P	0.723051493377538	0	lncRNA	964-1_{1..236}	"transcript_id ""ENST00000443030.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443030.1"" | genecode_v17"	chr2	101338683	101338918	-	ENSG00000228488.1	ENST00000443030.1	AC092168.4	AC092168.4-001	NA	NA	NA	inter
CUST_27887_PI429285431	3.3260798	P	3.3456173	P	0.986548922220835	0	lncRNA	29481-1_{1..833}	n325124|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332188|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332188|-1.0257800|-0.3710692	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325124|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332188|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332188|-1.0257800|-0.3710692	chr2	146043331	146044163	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39580_PI429285431	11.351109	P	11.361289	P	0.992968598498905	0	lncRNA	40523-1_{1..1060}	n387568|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011igo.1||-1.1014900|-0.2133433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387568|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011igo.1||-1.1014900|-0.2133433	chr6	  1187015	  1188074	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014538	0.9241949	A	0.9091508	A	1.01048233422714	0	lncRNA	XR_110235	XR_110235	XR_110235	NA	Hs.662373	LOC100506817	uncharacterized LOC100506817	ENST00000553712	THC2607619	NA	"PREDICTED: Homo sapiens hypothetical LOC100506817 (LOC100506817), miscRNA [XR_110235]"	chr14:91165655-91165714	hs|14q32.11	Agilent_HUMAN_G3V2	XR_110235	XR_110235	chr14	 91165655	 91165714	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31737_PI429285431	1.6275567	A	1.8672819	A	0.846906613099869	0	lncRNA	33478-1_{1..916}	n338272|BC043513|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|665|NULL|-0.7897160|-0.2270819	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338272|BC043513|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|665|NULL|-0.7897160|-0.2270819	chr14	 42881775	 42882690	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16112_PI429285431	0.8892103	A	0.8949819	A	0.996007423345362	0	lncRNA	17818-1_{1..206}	lnc-PIK3CG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIK3CG-1:1	chr7	106635357	106635562	+	lnc-PIK3CG-1	lnc-PIK3CG-1:1	XLOC_006201	linc-PRKAR2B	NA	NA	NA	inter
CUST_40921_PI429285431	1.3435239	A	1.0744722	A	1.20501549680602	0	lncRNA	41607-1_{1..2485}	n410781|NR_038235|lncRNA|Homosapiens||RefGeneNoncode|NR_038235||-0.1659830|-0.3206358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410781|NR_038235|lncRNA|Homosapiens||RefGeneNoncode|NR_038235||-0.1659830|-0.3206358	chr8	 58131647	 58134131	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6970_PI429285431	5.180532	P	5.357645	P	0.884471155856657	0	lncRNA	6918-1_{1..115}	"transcript_id ""ENST00000422833.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422833.1"" | genecode_v17"	chr22	 28103578	 28103692	+	ENSG00000231495.1	ENST00000422833.1	RP1-213J1P__B.2	RP1-213J1P__B.2-001	NA	NA	NA	inter
CUST_2356_PI429285431	1.4969621	A	2.8621168	A	0.388192809404638	0	lncRNA	2348-1_{1..606}	"transcript_id ""ENST00000511631.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511631.1"" | genecode_v17"	chr5	124712527	124713132	+	ENSG00000250402.1	ENST00000511631.1	RP11-395P13.4	RP11-395P13.4-001	NA	NA	NA	inter
CUST_6207_PI429285431	1.0822289	A	0.901417	A	1.13352161347942	0	lncRNA	6133-1_{1..575}	"transcript_id ""ENST00000589447.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589447.1"" | genecode_v17"	chr18	 53772337	 53772911	-	ENSG00000267712.1	ENST00000589447.1	RP11-456O19.4	RP11-456O19.4-004	NA	NA	NA	inter
CUST_30833_PI429285431	2.2301567	A	2.3469207	A	0.922253970400349	0	lncRNA	32621-1_{1..432}	n336786|Z97033|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328320|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328320|2.8982000|-0.0759668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336786|Z97033|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328320|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328320|2.8982000|-0.0759668	chr14	106967049	106967480	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26281_PI429285431	3.0437293	A	2.7829945	A	1.19808876526547	0	lncRNA	27787-1_{1..567}	lnc-MMRN1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MMRN1-2:2	chr4	 90647535	 90648101	+	lnc-MMRN1-2	lnc-MMRN1-2:2	ENSG00000251095.1	RP11-115D19.1	SNCA	NA	chr4:90645250-90657654	inner
CUST_32148_PI429285431	7.765676	P	7.939358	P	0.886577097695295	0	lncRNA	33848-1_{1..2872}	n338715|X52221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1135|NULL|9.7305400|-0.0583568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338715|X52221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1135|NULL|9.7305400|-0.0583568	chr19	 45855465	 45858336	-	NA	NA	NA	NA	PPP1R13L	NA	chr19:45882892-45884176	inner
CUST_46354_PI429285431	13.523513	P	13.626125	P	0.931345263176664	0	lncRNA	50578-1_{1..531}	"gi|392583866|ref|NR_052025.1| Homo sapiens SRA stem-loop interacting RNA binding protein (SLIRP), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392583866|ref|NR_052025.1| Homo sapiens SRA stem-loop interacting RNA binding protein (SLIRP), transcript variant 4, non-coding RNA"	Chr14	 78174414	 78174944	+	81892	NR_052025.1	NA	NA	NA	NA	NA	inter
CUST_22889_PI429285431	1.7305819	A	2.7676406	A	0.487319987093704	0	lncRNA	24466-1_{1..686}	lnc-HYI-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HYI-2:2	chr1	 44172730	 44173415	-	lnc-HYI-2	lnc-HYI-2:2	ENSG00000236200.1	RP11-184I16.2	ST3GAL3	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30chr1:44173218-44183012"	NA	inter
CUST_48581_PI429285431	0.91338277	A	0.9264725	A	0.990967927010503	0	lncRNA	52429-1_{1..418}	hg19_lincRNAsTranscripts_TCONS_l2_00014417 range=chr2:8717162-8719007 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014417 range=chr2:8717162-8719007 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	  8717162	  8717579	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005508	0.92111623	A	0.92471945	A	0.997505554528561	0	lncRNA	TCONS_00013867	NA	NA	NA	NA	XLOC_006505	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006505), lincRNA [TCONS_00013867]"	chr7:77144144-77144085	hs|7q11.23	Agilent_HUMAN_G3V2	TCONS_00013867	TCONS_00013867	chr7	 77144085	 77144144	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18418_PI429285431	5.0753455	P	5.044446	P	1.02164891085263	0	lncRNA	20143-1_{1..3000}	lnc-RNF39-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-RNF39-4:5	chr6	 30028739	 30031738	-	lnc-RNF39-4	lnc-RNF39-4:5	ENSG00000204623	ZNRD1-AS1	ZNRD1	"hg19_refFlat_HLA-A:range=chr6_mann_hap4:1202716-12056335'pad=0,hg19_refFlat_HLA-A:range=chr6_mann_hap4:1202716-12056335'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_HLA-C:range=chr6_mann_hap4:2583839-25867335'pad=0,hg19_refFlat_HLA-C:range=chr6_mann_hap4:2583839-25867335'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_HLA-B:range=chr6:31322260-313249355'pad=0,hg19_refFlat_HLA-B:range=chr6:31322260-313249355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-C:range=chr6_cox_hap2:2750201-27531035'pad=0,hg19_refFlat_HLA-C:range=chr6_cox_hap2:2750201-27531035'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9946895'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9946895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-G:range=chr6_ssto_hap7:1133174-11357115'pad=0,hg19_refFlat_HLA-G:range=chr6_ssto_hap7:1133174-11357115'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12103735'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12103735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-C:range=chr6_ssto_hap7:2570423-25733175'pad=0,hg19_refFlat_HLA-C:range=chr6_ssto_hap7:2570423-25733175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-E:range=chr6_dbb_hap3:1750949-17539985'pad=0,hg19_refFlat_HLA-E:range=chr6_dbb_hap3:1750949-17539985'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9950435'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9950435'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-G:range=chr6_qbl_hap6:1096207-10987445'pad=0,hg19_refFlat_HLA-G:range=chr6_qbl_hap6:1096207-10987445'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10319385'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10319385'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-E:range=chr6_qbl_hap6:1750224-17532735'pad=0,hg19_refFlat_HLA-E:range=chr6_qbl_hap6:1750224-17532735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_HLA-B:range=chr6_cox_hap2:2834949-28376235'pad=0,hg19_refFlat_HLA-B:range=chr6_cox_hap2:2834949-28376235'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-G:range=chr6:29795622-297981595'pad=0,hg19_refFlat_HLA-G:range=chr6:29795622-297981595'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_HLA-E:range=chr6_cox_hap2:1969373-19724225'pad=0,hg19_refFlat_HLA-E:range=chr6_cox_hap2:1969373-19724225'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_HLA-G:range=chr6_dbb_hap3:1096243-10987805'pad=0,hg19_refFlat_HLA-G:range=chr6_dbb_hap3:1096243-10987805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_HLA-E:range=chr6:30457309-304603585'pad=0,hg19_refFlat_HLA-E:range=chr6:30457309-304603585'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_HLA-A:range=chr6_apd_hap1:1150217-11531195'pad=0,hg19_refFlat_HLA-A:range=chr6_apd_hap1:1150217-11531195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_HLA-B:range=chr6_qbl_hap6:2615766-26184515'pad=0,hg19_refFlat_HLA-B:range=chr6_qbl_hap6:2615766-26184515'pad=0 3'pad=0 strand=- repeatMasking=none,-92.90;hg19_refFlat_HLA-A:range=chr6_ssto_hap7:1239666-12425835'pad=0,hg19_refFlat_HLA-A:range=chr6_ssto_hap7:1239666-12425835'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_HLA-F:range=chr6_mcf_hap5:991775-9938785'pad=0,hg19_refFlat_HLA-F:range=chr6_mcf_hap5:991775-9938785'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-E:range=chr6_mcf_hap5:1839173-18422225'pad=0,hg19_refFlat_HLA-E:range=chr6_mcf_hap5:1839173-18422225'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_HLA-E:range=chr6_mann_hap4:1805387-18084365'pad=0,hg19_refFlat_HLA-E:range=chr6_mann_hap4:1805387-18084365'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_HLA-A:range=chr6:29910331-299132325'pad=0,hg19_refFlat_HLA-A:range=chr6:29910331-299132325'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_HLA-A:range=chr6_dbb_hap3:1203692-12066085'pad=0,hg19_refFlat_HLA-A:range=chr6_dbb_hap3:1203692-12066085'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_HLA-C:range=chr6_qbl_hap6:2530195-25330895'pad=0,hg19_refFlat_HLA-C:range=chr6_qbl_hap6:2530195-25330895'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_HLA-A:range=chr6_mcf_hap5:1150182-12951355'pad=0,hg19_refFlat_HLA-A:range=chr6_mcf_hap5:1150182-12951355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_HLA-B:range=chr6_mann_hap4:2668715-26713905'pad=0,hg19_refFlat_HLA-B:range=chr6_mann_hap4:2668715-26713905'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_HLA-G:range=chr6_mcf_hap5:1095901-10984385'pad=0,hg19_refFlat_HLA-G:range=chr6_mcf_hap5:1095901-10984385'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_HLA-A:range=chr6_cox_hap2:1422082-14249845'pad=0,hg19_refFlat_HLA-A:range=chr6_cox_hap2:1422082-14249845'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9950665'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9950665'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-G:range=chr6_cox_hap2:1311513-13140505'pad=0,hg19_refFlat_HLA-G:range=chr6_cox_hap2:1311513-13140505'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_HLA-F:range=chr6_mcf_hap5:991775-13591805'pad=0,hg19_refFlat_HLA-F:range=chr6_mcf_hap5:991775-13591805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-B:range=chr6_ssto_hap7:2656019-26586945'pad=0,hg19_refFlat_HLA-B:range=chr6_ssto_hap7:2656019-26586945'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_HLA-A:range=chr6_qbl_hap6:1203109-12060255'pad=0,hg19_refFlat_HLA-A:range=chr6_qbl_hap6:1203109-12060255'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_HLA-E:range=chr6_ssto_hap7:1789599-17926485'pad=0,hg19_refFlat_HLA-E:range=chr6_ssto_hap7:1789599-17926485'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_HLA-B:range=chr6_mcf_hap5:2702040-27047285'pad=0,hg19_refFlat_HLA-B:range=chr6_mcf_hap5:2702040-27047285'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_HLA-C:range=chr6_dbb_hap3:2532552-25354465'pad=0,hg19_refFlat_HLA-C:range=chr6_dbb_hap3:2532552-25354465'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_HLA-C:range=chr6:31236946-312398485'pad=0,hg19_refFlat_HLA-C:range=chr6:31236946-312398485'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_HLA-G:range=chr6_mann_hap4:1095951-10984885'pad=0,hg19_refFlat_HLA-G:range=chr6_mann_hap4:1095951-10984885'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_HLA-F:range=chr6:29691241-296941845'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296941845'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_HLA-C:range=chr6_mcf_hap5:2617482-26203755'pad=0,hg19_refFlat_HLA-C:range=chr6_mcf_hap5:2617482-26203755'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr6:30029036-30032686"	NA	inter
LNCA_21_P0014745	6.3131533	P	6.3651233	P	0.96461824304805	0	lncRNA	XR_132478	XR_132478	XR_132478	NA	Hs.626983	LOC100652924	uncharacterized LOC100652924	NA	NP1403743	NA	"PREDICTED: Homo sapiens hypothetical LOC100652924 (LOC100652924), miscRNA [XR_132478]"	chr1:152185663-152185722	hs|1q21.3	Agilent_HUMAN_G3V2	XR_132478	XR_132478	chr1	152185663	152185722	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30985_PI429285431	1.0811948	A	0.9372884	A	1.10489279860297	0	lncRNA	32773-1_{1..646}	n337147|AF399513|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383932|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383932|3.0177400|-0.3761540	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337147|AF399513|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383932|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383932|3.0177400|-0.3761540	chr11	 55860985	 55861630	+	NA	NA	NA	NA	OR8H2	NA	chr11:55864719-55871631	inner
CUST_21758_PI429285431	1.0205717	A	1.0832378	A	0.957493036506655	0	lncRNA	23369-1_{1..3000}	lnc-XPC-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XPC-5:1	chr3	 14583380	 14586379	-	lnc-XPC-5	lnc-XPC-5:1	ENSG00000144596.7	GRIP2	GRIP2	NA	chr3:14573380-14583588	inner
CUST_15935_PI429285431	0.9015712	A	1.5676925	A	0.63019870724247	0	lncRNA	17632-1_{1..307}	lnc-EMX2-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EMX2-5:3	chr10	120005058	120005364	+	lnc-EMX2-5	lnc-EMX2-5:3	XLOC_008636	linc-NANOS1-3	NA	NA	NA	inter
CUST_29226_PI429285431	1.125808	A	0.92213637	A	1.15162549248976	0	lncRNA	30976-1_{1..456}	n326750|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006891|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006891|-0.9360550|-0.3523093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326750|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006891|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006891|-0.9360550|-0.3523093	chr1	   686153	   686608	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51796_PI429285431	4.1509776	P	4.4498487	P	0.812888227597341	0	lncRNA	55345-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00012909 range=chr19:19852148-19863638 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012909 range=chr19:19852148-19863638 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 19852148	 19855147	-	NA	NA	NA	NA	ZNF14	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.81;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40chr19:19842148-19843921"	NA	inter
CUST_17772_PI429285431	0.9026338	A	0.9079926	A	0.996292452876893	0	lncRNA	19503-2_{3001..5627}	lnc-KLF10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF10-1:1	chr8	103907513	103910139	-	lnc-KLF10-1	lnc-KLF10-1:1	XLOC_007173	linc-AZIN1-1	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	inter
CUST_41038_PI429285431	2.9521658	A	3.041367	A	0.940043093817169	0	lncRNA	41697-2_{3001..3427}	n411704|NR_044995|lncRNA|Homosapiens||RefGeneNoncode|NR_044995||4.0430600|-0.1918684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411704|NR_044995|lncRNA|Homosapiens||RefGeneNoncode|NR_044995||4.0430600|-0.1918684	chr13	114548292	114548718	+	NA	NA	NA	NA	GAS6	NA	chr13:114535292-114558719	inner
CUST_35936_PI429285431	0.92218494	A	0.91991466	A	1.00157487699938	0	lncRNA	37299-1_{1..2410}	n344574|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_122|NULL|-1.3180700|-0.2544638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344574|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_122|NULL|-1.3180700|-0.2544638	chr17	 43699270	 43701679	+	NA	NA	NA	NA	CRHR1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60chr17:43697710-43733551"	NA	inner
CUST_42332_PI429285431	4.2539787	P	4.1047173	P	1.109001563922	0	lncRNA	44984-1_{1..115}	ENST00000364514 ncrna:snoRNA chromosome:GRCh37:14:77667369:77667483:-1 gene:ENSG00000201384 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364514 ncrna:snoRNA chromosome:GRCh37:14:77667369:77667483:-1 gene:ENSG00000201384 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 77667369	 77667483	-	ENSG00000201384	ENST00000364514	NA	NA	TMEM63C	NA	chr14:77657369-77677483	inner
CUST_5480_PI429285431	0.9009829	A	0.8941511	A	1.00474667283715	0	lncRNA	5414-1_{1..1930}	"transcript_id ""ENST00000507031.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507031.1"" | genecode_v17"	chr16	 28814097	 28816026	+	ENSG00000251417.1	ENST00000507031.1	RP11-1348G14.4	RP11-1348G14.4-001	ATXN2L	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70chr16:28834414-28839149"	NA	inter
CUST_19991_PI429285431	0.91096526	A	0.9029385	A	1.00557923233109	0	lncRNA	21644-1_{1..636}	lnc-RP11-80A15.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-80A15.1.1-2:1	chr14	 25103502	 25104137	+	lnc-RP11-80A15.1.1-2	lnc-RP11-80A15.1.1-2:1	ENSG00000258657.1	RP11-104E19.1	GZMB	NA	chr14:25100160-25103432	inter
LNCA_21_P0004154	1.3198009	A	0.90810484	A	1.33024876119502	0	lncRNA	ENST00000513779	NA	NA	NA	NA	XLOC_004925	NA	ENST00000513779	NA	NA	"BROAD Institute lincRNA (XLOC_004925), lincRNA [TCONS_00009726]"	chr5:91767969-91767910	hs|5q14.3	Agilent_HUMAN_G3V2	ENST00000513779	ENST00000513779	chr5	 91767910	 91767969	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9278_PI429285431	1.763655	A	1.7086604	A	1.03885521486075	0	lncRNA	10783-1_{1..680}	lnc-PALLD-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PALLD-1:3	chr4	169931935	169932614	+	lnc-PALLD-1	lnc-PALLD-1:3	XLOC_003771	linc-CLCN3	CBR4	NA	chr4:169921935-169931468	inter
CUST_17077_PI429285431	0.91162026	A	0.913054	A	0.999006700809905	0	lncRNA	18786-1_{1..394}	lnc-PTS-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTS-3:2	chr11	112356392	112356785	+	lnc-PTS-3	lnc-PTS-3:2	XLOC_009280	linc-NCAM1-1	NA	NA	NA	inter
CUST_13018_PI429285431	0.905092	A	1.5413698	A	0.643370726644312	0	lncRNA	14645-1_{1..345}	lnc-TSN-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSN-8:1	chr2	123505691	123506035	+	lnc-TSN-8	lnc-TSN-8:1	XLOC_001651	linc-CNTNAP5-5	NA	NA	NA	inter
CUST_16557_PI429285431	0.9156291	A	0.9204205	A	0.996684363502142	0	lncRNA	18258-1_{1..429}	lnc-FAM160A1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM160A1-3:1	chr4	152754008	152754436	+	lnc-FAM160A1-3	lnc-FAM160A1-3:1	XLOC_003735	linc-ARFIP1-7	NA	NA	NA	inter
CUST_16173_PI429285431	6.5808043	P	6.6145616	P	0.976872851354156	0	lncRNA	17879-1_{1..230}	lnc-GPR142-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR142-1:1	chr17	 72377266	 72377495	+	lnc-GPR142-1	lnc-GPR142-1:1	XLOC_012304	linc-GPRC5C	GPR142	NA	chr17:72367266-72368739	inter
CUST_29083_PI429285431	3.588249	P	3.7002306	P	0.925316229360769	0	lncRNA	30814-1_{1..434}	n326576|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025523|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025523|-1.1221400|-0.4328990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326576|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025523|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025523|-1.1221400|-0.4328990	chr1	 69481642	 69482075	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43534_PI429285431	5.429205	P	4.9200864	P	1.42318045218499	0	lncRNA	48318-1_{1..3000}	"gi|311893317|ref|NR_037185.1| Homo sapiens PRP38 pre-mRNA processing factor 38 (yeast) domain containing B (PRPF38B), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|311893317|ref|NR_037185.1| Homo sapiens PRP38 pre-mRNA processing factor 38 (yeast) domain containing B (PRPF38B), transcript variant 2, non-coding RNA"	Chr1	109234935	109237934	+	55119	NR_037185.1	NA	NA	NA	NA	NA	inter
CUST_44418_PI429285431	11.257456	P	10.872455	P	1.30586069224226	0	lncRNA	49031-1_{1..308}	"gi|300244553|ref|NR_034011.1| Homo sapiens small nucleolar RNA host gene 8 (non-protein coding) (SNHG8), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|300244553|ref|NR_034011.1| Homo sapiens small nucleolar RNA host gene 8 (non-protein coding) (SNHG8), transcript variant 3, non-coding RNA"	Chr4	119199917	119200224	+	100093630	NR_034011.1	NA	NA	NA	NA	NA	inter
CUST_24619_PI429285431	8.60368	P	8.478719	P	1.09047825365166	0	lncRNA	26168-1_{1..441}	lnc-EVX1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EVX1-7:1	chr7	 27210927	 27211367	+	lnc-EVX1-7	lnc-EVX1-7:1	ENSG00000253187.2	HOXA-AS4	HOXA10	NA	chr7:27210210-27219880	inner
CUST_18312_PI429285431	1.1680126	A	1.1278117	A	1.02825700483568	0	lncRNA	20039-1_{1..2989}	lnc-SHISA8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SHISA8-1:1	chr22	 42230447	 42233435	-	lnc-SHISA8-1	lnc-SHISA8-1:1	ENSG00000184068	RP5-821D11.7	CCDC134	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SREBF2:range=chr22:42229275-423016645'pad=0,hg19_refFlat_SREBF2:range=chr22:42229275-423016645'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50chr22:42220447-42222306"	NA	inner
CUST_12921_PI429285431	7.443726	P	7.270876	P	1.12728320007636	0	lncRNA	14549-1_{1..379}	lnc-SLC9A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC9A1-1:2	chr1	 27560753	 27561131	-	lnc-SLC9A1-1	lnc-SLC9A1-1:2	XLOC_000754	linc-SLC9A1-1	WDTC1	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80chr1:27550753-27570843"	NA	inter
CUST_12329_PI429285431	2.0715504	A	0.8996392	A	2.2530997711243	0	lncRNA	13941-1_{1..724}	lnc-ENDOD1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENDOD1-1:3	chr11	 94890792	 94891515	+	lnc-ENDOD1-1	lnc-ENDOD1-1:3	XLOC_009255	linc-CEP57-3	NA	NA	NA	inter
CUST_4812_PI429285431	1.1316171	A	2.0305233	A	0.5362931755591	0	lncRNA	4756-1_{1..520}	"transcript_id ""ENST00000603228.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603228.1"" | genecode_v17"	chr14	 50505863	 50506382	-	ENSG00000258391.2	ENST00000603228.1	RP11-58E21.5	RP11-58E21.5-002	C14orf183	NA	chr14:50550369-50559361	inner
CUST_41312_PI429285431	13.175642	P	12.990334	P	1.13705969744039	0	lncRNA	42335-1_{1..80}	ENST00000411026 ncrna:miRNA chromosome:GRCh37:6:166922842:166922921:-1 gene:ENSG00000222958 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000411026 ncrna:miRNA chromosome:GRCh37:6:166922842:166922921:-1 gene:ENSG00000222958 gene_biotype:miRNA transcript_biotype:miRNA	chr6	166922842	166922921	-	ENSG00000222958	ENST00000411026	NA	NA	RPS6KA2	NA	chr6:166912842-166932921	inner
CUST_46754_PI429285431	1.1513251	A	1.1406245	A	1.00744466547032	0	lncRNA	50904-1_{1..828}	"gi|224548976|ref|NR_027177.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 21, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224548976|ref|NR_027177.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 21, non-coding RNA"	Chr17	 16342301	 16343128	+	125144	NR_027177.1	NA	NA	NA	NA	NA	inter
CUST_19281_PI429285431	5.673335	P	5.730323	P	0.961268923965641	0	lncRNA	20949-1_{1..623}	lnc-ATXN7-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATXN7-3:2	chr3	 64086483	 64087105	+	lnc-ATXN7-3	lnc-ATXN7-3:2	ENSG00000241572.1	PRICKLE2-AS1	PRICKLE2	"hg19_refFlat_PRICKLE2:range=chr3:64084727-641846035'pad=0,hg19_refFlat_PRICKLE2:range=chr3:64084727-641846035'pad=0 3'pad=0 strand=- repeatMasking=none,-99.70chr3:64079526-64096798"	NA	inner
CUST_23719_PI429285431	3.6987975	P	2.708751	A	1.98624900931725	0	lncRNA	25283-1_{1..506}	lnc-MST4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MST4.1-1:1	chrX	131563841	131564346	+	lnc-MST4.1-1	lnc-MST4.1-1:1	ENSG00000232160.1	RP5-842K24.2	MBNL3	"hg19_refFlat_RAP2C:range=chrX:131348196-1313512965'pad=0,hg19_refFlat_RAP2C:range=chrX:131348196-1313512965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40chrX:131553841-131574190"	NA	inner
CUST_32564_PI429285431	2.4929788	A	2.8430188	A	0.784562344908098	0	lncRNA	34228-1_{1..2363}	n339181|AK125250|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1612|NULL|-0.3066990|-0.2118995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339181|AK125250|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1612|NULL|-0.3066990|-0.2118995	chr2	235895938	235898300	-	NA	NA	NA	NA	SH3BP4	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr2:235885938-235908298"	NA	inner
CUST_50261_PI429285431	1.1486578	A	1.5164708	A	0.774956373149741	0	lncRNA	53984-1_{1..2045}	hg19_lincRNAsTranscripts_TCONS_l2_00029973 range=chr9:68743531-68769869 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029973 range=chr9:68743531-68769869 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 68743531	 68745575	-	NA	NA	NA	NA	LOC100652863	"hg19_refFlat_FRG1:range=chr4:190862165-1908842845'pad=0,hg19_refFlat_FRG1:range=chr4:190862165-1908842845'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50chr9:68733531-68750959"	NA	inter
CUST_15402_PI429285431	1.0805438	A	1.1194568	A	0.97338807139255	0	lncRNA	17087-1_{1..652}	lnc-GNG2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNG2-1:6	chr14	 52291703	 52292354	+	lnc-GNG2-1	lnc-GNG2-1:6	XLOC_010828	linc-GNG2	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40"	NA	inter
CUST_50089_PI429285431	4.958624	P	4.8018274	P	1.11480903502878	0	lncRNA	53823-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00028401 range=chr8:126957007-126967898 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028401 range=chr8:126957007-126967898 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	126960007	126963006	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.10"	NA	inter
CUST_25999_PI429285431	0.9191564	A	0.9211781	A	0.998599645757388	0	lncRNA	27518-1_{1..442}	lnc-HNMT-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HNMT-2:2	chr2	139328338	139328779	+	lnc-HNMT-2	lnc-HNMT-2:2	ENSG00000241772.1	AC092620.2	SPOPL	NA	chr2:139318338-139330805	inner
CUST_21896_PI429285431	1.042485	A	0.92336035	A	1.08607569007278	0	lncRNA	23505-1_{1..505}	lnc-MUC22-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MUC22-1:3	chr6	 31023589	 31024093	+	lnc-MUC22-1	lnc-MUC22-1:3	ENSG00000228789.2	HCG22	NA	NA	NA	inter
CUST_50114_PI429285431	9.139628	P	8.40054	P	1.66912037046073	0	lncRNA	53844-1_{1..793}	hg19_lincRNAsTranscripts_TCONS_l2_00028803 range=chr9:69065867-69087357 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028803 range=chr9:69065867-69087357 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69065867	 69066659	+	NA	NA	NA	NA	LOC100507370	NA	chr9:69065490-69089939	inter
CUST_49350_PI429285431	2.7529793	A	2.6286368	A	1.09001085324695	0	lncRNA	53163-1_{1..1384}	hg19_lincRNAsTranscripts_TCONS_l2_00022371 range=chr5:74959294-74967964 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022371 range=chr5:74959294-74967964 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 74959294	 74960677	+	NA	NA	NA	NA	POC5	NA	chr5:74970023-74977964	inner
CUST_27507_PI429285431	0.91071445	A	0.9147205	A	0.997227069431255	0	lncRNA	29078-1_{1..577}	n324686|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320631|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320631|-1.1665700|-0.5389722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324686|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320631|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320631|-1.1665700|-0.5389722	chr22	 26289799	 26290375	-	NA	NA	NA	NA	MYO18B	NA	chr22:26279799-26309534	inner
CUST_38864_PI429285431	1.1193444	A	0.8938394	A	1.16918643817384	0	lncRNA	39854-1_{1..1046}	n384734|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kwt.2||-1.3365800|-0.4087553	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384734|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kwt.2||-1.3365800|-0.4087553	chr5	131694766	131695811	+	NA	NA	NA	NA	SLC22A5	NA	chr5:131705401-131705812	inter
CUST_27393_PI429285431	1.4529692	A	0.9094919	A	1.45748122599174	0	lncRNA	28957-1_{1..709}	n324557|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000192595|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000192595|-0.1843570|-0.2647620	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324557|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000192595|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000192595|-0.1843570|-0.2647620	chr6	 28913624	 28914332	-	NA	NA	NA	NA	NA	"hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70"	NA	inter
CUST_5084_PI429285431	0.9211281	A	0.9207324	A	1.00027431595709	0	lncRNA	5024-1_{1..571}	"transcript_id ""ENST00000415154.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415154.1"" | genecode_v17"	chr14	106744315	106744885	+	ENSG00000229084.2	ENST00000415154.1	LINC00226	LINC00226-002	NA	NA	NA	inter
CUST_14306_PI429285431	0.90312594	A	0.8934312	A	1.00674251076209	0	lncRNA	15966-1_{1..3000}	lnc-HS3ST3A1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HS3ST3A1-4:4	chr17	 13682836	 13685835	-	lnc-HS3ST3A1-4	lnc-HS3ST3A1-4:4	XLOC_012393	linc-HS3ST3A1-1	NA	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80"	NA	inter
CUST_32614_PI429285431	0.8989726	A	0.8886595	A	1.00717410767821	0	lncRNA	34273-1_{1..2012}	n339237|AK026763|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1669|NULL|-1.3046900|-0.3627458	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339237|AK026763|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1669|NULL|-1.3046900|-0.3627458	chr16	 61725659	 61727670	-	NA	NA	NA	NA	CDH8	NA	chr16:61715659-61737654	inner
CUST_5840_PI429285431	5.6311054	P	4.51332	P	2.17013591337143	0	lncRNA	5769-1_{1..1654}	"transcript_id ""ENST00000585086.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585086.2"" | genecode_v17"	chr17	 37408897	 37410550	-	ENSG00000266753.2	ENST00000585086.2	RP11-690G19.3	RP11-690G19.3-001	FBXL20	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-28.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr17:37408897-37420550"	NA	inner
CUST_2268_PI429285431	1.6261439	A	0.89834183	A	1.65611409713576	0	lncRNA	2260-1_{1..652}	"transcript_id ""ENST00000502437.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502437.1"" | genecode_v17"	chr5	 95549050	 95549701	-	ENSG00000249746.1	ENST00000502437.1	RP11-254I22.3	RP11-254I22.3-001	NA	NA	NA	inter
CUST_30554_PI429285431	4.4781466	P	4.5701985	P	0.938187445220693	0	lncRNA	32335-1_{1..526}	n335733|X00199|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000320855|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000320855|-0.6374730|-0.0486948	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335733|X00199|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000320855|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000320855|-0.6374730|-0.0486948	chr19	 45411163	 45411688	-	NA	NA	NA	NA	TOMM40	"hg19_refFlat_APOE:range=chr19:45409882-454125075'pad=0,hg19_refFlat_APOE:range=chr19:45409882-454125075'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.70chr19:45401163-45406946"	NA	inner
CUST_8353_PI429285431	0.9074417	A	0.9018331	A	1.00389515173844	0	lncRNA	9932-1_{1..2032}	lnc-COL24A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COL24A1-1:1	chr1	 86124367	 86126398	-	lnc-COL24A1-1	lnc-COL24A1-1:1	ENSG00000249070	ENST00000502129	ZNHIT6	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-23.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80chr1:86115106-86136130"	NA	inner
CUST_47841_PI429285431	2.053564	A	3.4060364	P	0.391620339245598	0	lncRNA	51748-1_{1..995}	"gi|226246644|ref|NR_027454.1| Homo sapiens uncharacterized LOC731656 (LOC731656), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|226246644|ref|NR_027454.1| Homo sapiens uncharacterized LOC731656 (LOC731656), non-coding RNA"	NA	NA	NA	NA	NA	NR_027454.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-61.60"	NA	Unknown
CUST_7267_PI429285431	0.904089	A	0.89290965	A	1.0077790356285	0	lncRNA	8067-1_{1..303}	"transcript_id ""ENST00000364270.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000364270.1"" | genecode_v17"	chr9	119959397	119959699	+	ENSG00000201140.1	ENST00000364270.1	RN7SKP128	RN7SKP128-201	ASTN2	NA	chr9:119949397-119969699	inner
CUST_35979_PI429285431	3.8874555	P	4.8052697	P	0.529310361207299	0	lncRNA	37324-2_{3001..6000}	n344599|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_147|NULL|-1.5340900|-0.2563807	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344599|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_147|NULL|-1.5340900|-0.2563807	chr2	 65043867	 65046866	-	NA	NA	NA	NA	SLC1A4	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr2:65187142-65193459"	NA	inter
CUST_12135_PI429285431	0.91499907	A	0.90722877	A	1.0054004919029	0	lncRNA	13732-1_{1..2825}	lnc-ZFP64-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP64-1:1	chr20	 51040273	 51043097	-	lnc-ZFP64-1	lnc-ZFP64-1:1	XLOC_013795	linc-ZFP64-5	NA	NA	NA	inter
CUST_41424_PI429285431	0.91569346	A	0.8972705	A	1.01285170513835	0	lncRNA	42574-1_{1..86}	ENST00000384988 ncrna:miRNA chromosome:GRCh37:1:71533314:71533399:-1 gene:ENSG00000207721 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384988 ncrna:miRNA chromosome:GRCh37:1:71533314:71533399:-1 gene:ENSG00000207721 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 71533314	 71533399	-	ENSG00000207721	ENST00000384988	NA	NA	ZRANB2	NA	chr1:71528974-71543399	inner
CUST_24599_PI429285431	0.9057899	A	0.89124054	A	1.01013587131818	0	lncRNA	26148-1_{1..2453}	lnc-HERC3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HERC3-1:2	chr4	 89648986	 89651438	+	lnc-HERC3-1	lnc-HERC3-1:2	ENSG00000248019.2	FAM13A-AS1	FAM13A	"hg19_refFlat_FAM13A:range=chr4:89649684-897441555'pad=0,hg19_refFlat_FAM13A:range=chr4:89649684-897441555'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_FAM13A:range=chr4:89649684-899781155'pad=0,hg19_refFlat_FAM13A:range=chr4:89649684-899781155'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr4:89647106-89659837"	NA	inner
CUST_24540_PI429285431	0.89657116	A	0.90764725	A	0.992352035102294	0	lncRNA	26090-1_{1..2007}	lnc-KCNK12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KCNK12-1:1	chr2	 47715469	 47717475	-	lnc-KCNK12-1	lnc-KCNK12-1:1	ENSG00000236558.2	AC138655.6	MSH2	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30chr2:47705469-47710360"	NA	inter
CUST_42137_PI429285431	0.9165083	A	0.92064804	A	0.997134663824952	0	lncRNA	44154-1_{1..81}	ENST00000385083 ncrna:miRNA chromosome:GRCh37:X:151562884:151562964:-1 gene:ENSG00000207818 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385083 ncrna:miRNA chromosome:GRCh37:X:151562884:151562964:-1 gene:ENSG00000207818 gene_biotype:miRNA transcript_biotype:miRNA	chrX	151562884	151562964	-	ENSG00000207818	ENST00000385083	NA	NA	GABRA3	NA	chrX:151552884-151572964	inner
CUST_24306_PI429285431	3.0364301	P	3.2754178	P	0.847339659087799	0	lncRNA	25857-1_{1..452}	lnc-ARHGEF38-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARHGEF38-1:2	chr4	106629058	106629509	+	lnc-ARHGEF38-1	lnc-ARHGEF38-1:2	ENSG00000249823.1	RP11-311D14.2	GSTCD	NA	chr4:106629941-106639250	inner
CUST_40027_PI429285431	7.060575	P	6.860262	P	1.14894759796248	0	lncRNA	40885-1_{1..1188}	n407201|NR_026665|lncRNA|Homosapiens||RefGeneNoncode|NR_026665||3.7703600|-0.3432788	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407201|NR_026665|lncRNA|Homosapiens||RefGeneNoncode|NR_026665||3.7703600|-0.3432788	chr1	117057155	117058342	-	NA	NA	NA	NA	IGSF3	NA	chr1:117117031-117123715	inner
LNCA_21_P0007850	1.488277	A	1.9778078	A	0.712256703576741	0	lncRNA	AK092411	NA	AK092411	NA	Hs.572150	XLOC_009869	NA	NA	THC2501133	NA	"BROAD Institute lincRNA (XLOC_009869), lincRNA [TCONS_00021206]"	chr12:106646113-106646172	hs|12q23.3	Agilent_HUMAN_G3V2	AK092411	AK092411	chr12	106646113	106646172	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38945_PI429285431	1.2088861	A	0.91236806	A	1.22817661590625	0	lncRNA	39932-1_{1..3000}	n385114|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tcg.2||-0.7845570|-0.2144504	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385114|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tcg.2||-0.7845570|-0.2144504	chr7	 31147441	 31150440	+	NA	NA	NA	NA	ADCYAP1R1	NA	chr7:31137441-31151093	inner
CUST_2138_PI429285431	2.374294	A	2.601	A	0.854583874752753	0	lncRNA	2129-1_{1..442}	"transcript_id ""ENST00000510938.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510938.1"" | genecode_v17"	chr5	 37939467	 37939908	-	ENSG00000250032.1	ENST00000510938.1	CTD-2194L12.3	CTD-2194L12.3-001	NA	NA	NA	inter
CUST_3791_PI429285431	0.9453479	A	0.91376185	A	1.02213520903806	0	lncRNA	3759-1_{1..796}	"transcript_id ""ENST00000596263.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596263.1"" | genecode_v17"	chr10	109565696	109566491	-	ENSG00000229981.2	ENST00000596263.1	RP11-215N21.1	RP11-215N21.1-011	LOC100128304	NA	chr10:109673555-109675061	inter
CUST_33170_PI429285431	0.9242246	A	0.9101564	A	1.00979903233222	0	lncRNA	34763-1_{1..2192}	n339860|BC035703|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2308|NULL|-0.9345150|-0.2039634	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339860|BC035703|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2308|NULL|-0.9345150|-0.2039634	chr18	 43676292	 43678483	+	NA	NA	NA	NA	HAUS1	"hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ATP5A1:range=chr18:43664248-436781975'pad=0,hg19_refFlat_ATP5A1:range=chr18:43664248-436781975'pad=0 3'pad=0 strand=- repeatMasking=none,-104.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.51;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70chr18:43684298-43688434"	NA	inner
CUST_8870_PI429285431	0.9158312	A	0.9215244	A	0.996061550587465	0	lncRNA	10408-2_{3001..3920}	lnc-KCNG3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNG3-2:1	chr2	 42842889	 42843808	-	lnc-KCNG3-2	lnc-KCNG3-2:1	ENSG00000251140	ENST00000509845	MTA3	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30chr2:42829889-42852116"	NA	inner
CUST_25868_PI429285431	1.9224292	A	1.1001353	A	1.76821523909769	0	lncRNA	27389-1_{1..300}	lnc-CCNJ-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCNJ-1:10	chr10	 97963676	 97963975	+	lnc-CCNJ-1	lnc-CCNJ-1:10	ENSG00000177853.10	ZNF518A	BLNK	NA	chr10:97953676-97973885	inter
CUST_7161_PI429285431	6.873993	P	6.954538	P	0.945700326552602	0	lncRNA	7238-1_{1..300}	"transcript_id ""ENST00000411143.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411143.1"" | genecode_v17"	chr1	192844816	192845115	-	ENSG00000223075.1	ENST00000411143.1	RN7SKP126	RN7SKP126-201	NA	NA	NA	inter
CUST_321_PI429201921	0.92545974	A	0.9100583	A	1.01073265080084	0	lncRNA	215-2_{3001..6000}	TC13001141.hg.1	TCONS_l2_00007421-XLOC_l2_003764 // Broad TUCP // linc-C13orf34-9 chr13:+:67946518-67954108 // chr13 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00006899-XLOC_l2_003764 // Broad TUCP // linc-C13orf34-9 chr13:+:67949009-67954112 // chr13 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr13:+:67946518-67954108	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00007421-XLOC_l2_003764	linc-C13orf34-9	chr13	 67946518	 67954108	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39611_PI429285431	3.0905073	P	2.3939052	A	1.62068318841245	0	lncRNA	40551-3_{6001..8619}	n387663|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kwn.1||1.3550400|-0.2245321	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387663|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kwn.1||1.3550400|-0.2245321	chr8	  7124141	  7126759	-	NA	NA	NA	NA	FAM90A15	NA	chr8:7108141-7117436	inter
CUST_15253_PI429285431	4.2358704	P	4.6818295	P	0.734096129141538	0	lncRNA	16925-1_{1..803}	lnc-CEBPB-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEBPB-6:1	chr20	 48917810	 48918612	+	lnc-CEBPB-6	lnc-CEBPB-6:1	XLOC_013561	linc-PTPN1-3	NA	NA	NA	inter
CUST_50450_PI429285431	7.3691783	P	7.181826	P	1.13867205400542	0	lncRNA	54156-1_{1..1266}	hg19_lincRNAsTranscripts_TCONS_l2_00030240 range=chrX:65014186-65015782 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030240 range=chrX:65014186-65015782 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 65014186	 65015451	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37365_PI429285431	0.90370035	A	0.89463323	A	1.0063046397648	0	lncRNA	38470-1_{1..1174}	n345814|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1363|NULL|-1.5391900|-0.3166674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345814|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1363|NULL|-1.5391900|-0.3166674	chr6	 25081594	 25082767	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00324399	5.393654	P	5.291562	P	1.07332872989116	0	lncRNA	XR_110378	XR_110378	XR_110378	NA	Hs.568059	LOC100507317	uncharacterized LOC100507317	ENST00000553135	THC2498136	NA	"PREDICTED: Homo sapiens hypothetical LOC100507317 (LOC100507317), miscRNA [XR_110378]"	chr12:70636352-70636293	hs|12q15	Agilent_HUMAN_G3V2	XR_110378	XR_110378	chr12	 70636293	 70636352	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28685_PI429285431	0.8912258	A	0.89529717	A	0.997181919627779	0	lncRNA	30383-1_{1..366}	n326071|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046733|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046733|-1.1715000|-0.5179860	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326071|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046733|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046733|-1.1715000|-0.5179860	chr10	  8979957	  8980322	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_944_PI429285431	0.9270005	A	1.0270538	A	0.932998521507863	0	lncRNA	934-1_{1..1103}	"transcript_id ""ENST00000439259.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439259.1"" | genecode_v17"	chr2	 78315856	 78316958	+	ENSG00000229494.1	ENST00000439259.1	AC012494.1	AC012494.1-001	NA	NA	NA	inter
LNCA_21_P0005238	0.91219383	A	0.92156994	A	0.993522048770742	0	lncRNA	ENST00000424888	NA	NA	NA	NA	XLOC_006140	NA	ENST00000424888	THC2642326	NA	"BROAD Institute lincRNA (XLOC_006140), lincRNA [TCONS_00013019]"	chr7:67583765-67583824	hs|7q11.22	Agilent_HUMAN_G3V2	ENST00000424888	ENST00000424888	chr7	 67583765	 67583824	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16580_PI429285431	3.26206	P	3.4080873	P	0.903735625274124	0	lncRNA	18281-1_{1..1665}	lnc-KIN-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-KIN-2:3	chr10	  8094363	  8096027	-	lnc-KIN-2	lnc-KIN-2:3	XLOC_008724	linc-KIN-5	GATA3	NA	chr10:8096667-8105447	inter
CUST_467_PI429285431	1.4513543	A	1.1031748	A	1.27295330617062	0	lncRNA	458-1_{1..453}	"transcript_id ""ENST00000430905.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430905.1"" | genecode_v17"	chr1	162008806	162009258	+	ENSG00000227818.1	ENST00000430905.1	RP11-227F8.2	RP11-227F8.2-001	NA	NA	NA	inter
CUST_6696_PI429285431	0.91881514	A	0.91564846	A	1.00219738603555	0	lncRNA	6645-1_{1..417}	"transcript_id ""ENST00000412348.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412348.1"" | genecode_v17"	chr20	 40642674	 40643090	-	ENSG00000228959.1	ENST00000412348.1	RP5-1121H13.3	RP5-1121H13.3-001	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-30.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40"	NA	inter
CUST_50234_PI429285431	2.6016448	A	2.5938323	A	1.0054299011128	0	lncRNA	53958-1_{1..2278}	hg19_lincRNAsTranscripts_TCONS_l2_00029332 range=chr9:67327421-67340188 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029332 range=chr9:67327421-67340188 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 67327421	 67329698	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7426_PI429285431	4.299404	P	2.9965625	A	2.46714327492446	0	lncRNA	9068-1_{1..517}	lnc-XRN2-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-XRN2-2:12	chr20	 21227117	 21227633	+	lnc-XRN2-2	lnc-XRN2-2:12	ENSG00000088970	PLK1S1	PLK1S1	NA	chr20:21217117-21227260	inner
CUST_48258_PI429285431	5.190132	P	5.434844	P	0.843984260843979	0	lncRNA	52121-1_{1..1870}	hg19_lincRNAsTranscripts_TCONS_l2_00000977 range=chr1:1006366-1009675 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000977 range=chr1:1006366-1009675 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	  1006366	  1008235	-	NA	NA	NA	NA	C1orf159	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-63.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00chr1:1017198-1019675"	NA	inner
CUST_22317_PI429285431	0.9125401	A	0.923209	A	0.992632158650785	0	lncRNA	23916-1_{1..406}	lnc-MARVELD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MARVELD3-1:1	chr16	 71697809	 71698214	+	lnc-MARVELD3-1	lnc-MARVELD3-1:1	ENSG00000260185.1	RP11-432I5.6	PHLPP2	"hg19_refFlat_PHLPP2:range=chr16:71682793-717486985'pad=0,hg19_refFlat_PHLPP2:range=chr16:71682793-717486985'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30chr16:71687809-71708115"	NA	inner
CUST_32519_PI429285431	0.9045228	A	0.91407377	A	0.993401637503804	0	lncRNA	34186-1_{1..3000}	n339124|AK126661|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1554|NULL|0.3834500|-0.2385297	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339124|AK126661|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1554|NULL|0.3834500|-0.2385297	chr16	 23423691	 23426690	+	NA	NA	NA	NA	COG7	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_COG7:range=chr16:23400241-234643155'pad=0,hg19_refFlat_COG7:range=chr16:23400241-234643155'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70chr16:23413691-23438001"	NA	inner
CUST_14656_PI429285431	0.90461904	A	0.906485	A	0.99870745114874	0	lncRNA	16325-1_{1..386}	lnc-HDDC3-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HDDC3-4:3	chr15	 91256398	 91256783	-	lnc-HDDC3-4	lnc-HDDC3-4:3	XLOC_011577	linc-CIB1-3	BLM	NA	chr15:91260579-91266537	inter
CUST_6911_PI429285431	1.101774	A	1.4328662	A	0.794934446519797	0	lncRNA	6861-1_{1..1627}	"transcript_id ""ENST00000558085.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558085.1"" | genecode_v17"	chr22	 17082777	 17084403	+	ENSG00000100181.16	ENST00000558085.1	TPTEP1	TPTEP1-006	CCT8L2	"hg19_refFlat_VWF:range=chr12:6058181-62323625'pad=0,hg19_refFlat_VWF:range=chr12:6058181-62323625'pad=0 3'pad=0 strand=- repeatMasking=none,-99.50chr22:17072777-17073700"	NA	inter
CUST_40598_PI429285431	1.6566571	A	1.3435667	A	1.24236612663456	0	lncRNA	41344-1_{1..1897}	n410070|NR_036508|lncRNA|Homosapiens||RefGeneNoncode|NR_036508||-0.1461750|-0.2375230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410070|NR_036508|lncRNA|Homosapiens||RefGeneNoncode|NR_036508||-0.1461750|-0.2375230	chr19	 58514261	 58516157	+	NA	NA	NA	NA	ZNF606	"hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30chr19:58504261-58514714"	NA	inner
LNCA_21_P0008905	2.7272897	A	2.676432	A	1.03588058460125	0	lncRNA	TCONS_00024327	NA	NA	NA	NA	XLOC_011640	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011640), lincRNA [TCONS_00024327]"	chr16:9773322-9773381	hs|16p13.2	Agilent_HUMAN_G3V2	TCONS_00024327	TCONS_00024327	chr16	  9773322	  9773381	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45394_PI429285431	0.9219521	A	1.0551474	A	0.911809723983033	0	lncRNA	49824-1_{1..1015}	"gi|410170578|ref|XR_158849.2| PREDICTED: Homo sapiens uncharacterized LOC100996557 (LOC100996557), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170578|ref|XR_158849.2| PREDICTED: Homo sapiens uncharacterized LOC100996557 (LOC100996557), misc_RNA"	Chr9	 99449359	 99450373	+	100996557	XR_158849.3	NA	NA	NA	NA	NA	inter
CUST_9379_PI429285431	0.89770055	A	0.8992477	A	0.998928172157832	0	lncRNA	10882-1_{1..451}	lnc-C3orf30-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C3orf30-4:1	chr3	117447862	117448312	+	lnc-C3orf30-4	lnc-C3orf30-4:1	XLOC_002773	linc-C3orf30-3	NA	NA	NA	inter
CUST_4777_PI429285431	0.9156585	A	0.92429745	A	0.994029828886682	0	lncRNA	4721-2_{3001..3644}	"transcript_id ""ENST00000557440.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557440.1"" | genecode_v17"	chr14	 39221562	 39222205	-	ENSG00000259070.1	ENST00000557440.1	LINC00639	LINC00639-003	NA	"hg19_refFlat_ZFP41:range=chr8:144332014-1443326105'pad=0,hg19_refFlat_ZFP41:range=chr8:144332014-1443326105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80"	NA	inter
CUST_30256_PI429285431	0.9103014	A	0.91878945	A	0.994133805778435	0	lncRNA	32031-1_{1..498}	n335132|AY198183|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250980|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250980|0.6676920|-0.2324807	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335132|AY198183|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250980|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250980|0.6676920|-0.2324807	chr10	 69299383	 69299880	-	NA	NA	NA	NA	CTNNA3	NA	chr10:69289383-69435382	inner
CUST_31883_PI429285431	2.2267466	A	2.892666	A	0.630286907464271	0	lncRNA	33614-1_{1..2562}	n338437|AK074255|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|834|NULL|-0.2450200|-0.3357309	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338437|AK074255|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|834|NULL|-0.2450200|-0.3357309	chr14	 89285951	 89288512	-	NA	NA	NA	NA	TTC8	"hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.80chr14:89290978-89298495"	NA	inter
CUST_33889_PI429285431	4.0118895	P	4.373721	P	0.778176058554173	0	lncRNA	35432-1_{1..1697}	n340680|BC041325|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3143|NULL|7.4401200|-0.1709735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340680|BC041325|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3143|NULL|7.4401200|-0.1709735	chr5	148961134	148962830	+	NA	NA	NA	NA	ARHGEF37	NA	chr5:148961135-149014527	inner
CUST_2159_PI429285431	1.5866312	A	1.9143118	A	0.796816484924739	0	lncRNA	2151-1_{1..421}	"transcript_id ""ENST00000512618.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512618.1"" | genecode_v17"	chr5	 53686668	 53687088	+	ENSG00000249069.3	ENST00000512618.1	RP11-461C13.1	RP11-461C13.1-001	NA	NA	NA	inter
CUST_6222_PI429285431	1.3236922	A	1.5809195	A	0.836694409124466	0	lncRNA	6148-1_{1..558}	"transcript_id ""ENST00000591869.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591869.1"" | genecode_v17"	chr18	 58297400	 58297957	-	ENSG00000267098.1	ENST00000591869.1	RP11-325K19.1	RP11-325K19.1-001	NA	NA	NA	inter
CUST_5554_PI429285431	5.0734015	P	5.500794	P	0.743604548442136	0	lncRNA	5484-1_{1..584}	"transcript_id ""ENST00000566383.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566383.1"" | genecode_v17"	chr16	 53407405	 53407988	+	ENSG00000261804.1	ENST00000566383.1	RP11-44F14.2	RP11-44F14.2-001	LOC643802	NA	chr16:53403274-53405041	inter
CUST_26304_PI429285431	0.9068639	A	0.92986333	A	0.984184410878974	0	lncRNA	27810-1_{1..592}	lnc-RACGAP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RACGAP1-1:2	chr12	 50356450	 50357041	-	lnc-RACGAP1-1	lnc-RACGAP1-1:2	ENSG00000257588.1	RP11-469H8.6	AQP2	"hg19_refFlat_AQP2:range=chr12:50344614-503493915'pad=0,hg19_refFlat_AQP2:range=chr12:50344614-503493915'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.00chr12:50346450-50352664"	NA	inner
CUST_17217_PI429285431	4.2646084	P	4.3273296	P	0.957456468238688	0	lncRNA	18931-1_{1..602}	lnc-SEL1L-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEL1L-7:2	chr14	 84381323	 84381924	-	lnc-SEL1L-7	lnc-SEL1L-7:2	XLOC_011090	linc-SEL1L-6	NA	NA	NA	inter
CUST_19391_PI429285431	0.9207536	A	0.98711777	A	0.955041831038917	0	lncRNA	21053-1_{1..378}	lnc-THNSL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THNSL1-1:1	chr10	 24620994	 24621371	+	lnc-THNSL1-1	lnc-THNSL1-1:1	ENSG00000235229.1	RP11-429A24.4	KIAA1217	NA	chr10:24610994-24631071	inner
CUST_11559_PI429285431	4.138719	P	3.8068666	P	1.25862839850405	0	lncRNA	13135-1_{1..396}	lnc-FAM53A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM53A-1:1	chr4	  1581885	  1582280	-	lnc-FAM53A-1	lnc-FAM53A-1:1	XLOC_003853	linc-CTBP1-4	NA	NA	NA	inter
CUST_41564_PI429285431	0.92089146	A	0.9012816	A	1.01368531743626	0	lncRNA	42877-1_{1..66}	ENST00000583520 ncrna:miRNA chromosome:GRCh37:2:79876420:79876485:-1 gene:ENSG00000266436 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583520 ncrna:miRNA chromosome:GRCh37:2:79876420:79876485:-1 gene:ENSG00000266436 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 79876420	 79876485	-	ENSG00000266436	ENST00000583520	NA	NA	CTNNA2	NA	chr2:79866420-79886485	inner
CUST_14021_PI429285431	0.88777137	A	0.9027784	A	0.989651834003577	0	lncRNA	15670-1_{1..516}	lnc-IRX4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRX4-4:1	chr5	  2312293	  2312808	-	lnc-IRX4-4	lnc-IRX4-4:1	XLOC_004709	linc-IRX4-2	NA	NA	NA	inter
CUST_35667_PI429285431	1.2664998	A	1.0811771	A	1.13707128330035	0	lncRNA	37088-1_{1..3000}	n342826|AK127874|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5329|NULL|-1.0168100|-0.2186835	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342826|AK127874|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5329|NULL|-1.0168100|-0.2186835	chr7	149697840	149700839	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14249_PI429285431	2.3302157	A	1.8287307	A	1.41566999515785	0	lncRNA	15907-1_{1..3000}	lnc-HSP90AA1-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HSP90AA1-10:1	chr14	101989556	101992555	-	lnc-HSP90AA1-10	lnc-HSP90AA1-10:1	XLOC_011137	linc-RTL1-5	NA	NA	NA	inter
CUST_24916_PI429285431	2.171163	A	2.1448169	A	1.01842948990243	0	lncRNA	26457-1_{1..588}	lnc-PGPEP1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PGPEP1L-1:1	chr15	 99645894	 99646481	-	lnc-PGPEP1L-1	lnc-PGPEP1L-1:1	ENSG00000259475.1	RP11-654A16.3	SYNM	"hg19_refFlat_SYNM:range=chr15:99645406-996732635'pad=0,hg19_refFlat_SYNM:range=chr15:99645406-996732635'pad=0 3'pad=0 strand=+ repeatMasking=none,-111.40chr15:99645286-99656030"	NA	inner
CUST_44189_PI429285431	5.9768	P	6.113474	P	0.909613770347581	0	lncRNA	48846-1_{1..2258}	"gi|333805621|ref|NR_038264.1| Homo sapiens ADAMTS9 antisense RNA 2 (ADAMTS9-AS2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|333805621|ref|NR_038264.1| Homo sapiens ADAMTS9 antisense RNA 2 (ADAMTS9-AS2), non-coding RNA"	Chr3	 64670546	 64672803	+	100507098	NR_038264.1	NA	NA	NA	NA	NA	inter
CUST_17420_PI429285431	0.90962815	A	0.9129687	A	0.997687185871575	0	lncRNA	19145-1_{1..3000}	lnc-NCOA3-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NCOA3-7:2	chr20	 46587007	 46590006	+	lnc-NCOA3-7	lnc-NCOA3-7:2	XLOC_013545	linc-ARFGEF2-10	NA	"hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70"	NA	inter
CUST_44024_PI429285431	1.5687296	A	1.3439156	A	1.16862657322865	0	lncRNA	48708-2_{3001..4607}	"gi|333805640|ref|NR_038272.1| Homo sapiens TTN antisense RNA 1 (TTN-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|333805640|ref|NR_038272.1| Homo sapiens TTN antisense RNA 1 (TTN-AS1), transcript variant 1, non-coding RNA"	Chr2	179390554	179392160	+	100506866	NR_038272.1	NA	NA	NA	"hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70"	NA	inter
CUST_26656_PI429285431	1.1802275	A	1.2925391	A	0.925104598055095	0	lncRNA	28156-1_{1..497}	lnc-FPGT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FPGT-1:1	chr1	 74934667	 74935163	+	lnc-FPGT-1	lnc-FPGT-1:1	ENSG00000233894.1	RP4-650F12.2	FPGT-TNNI3K	NA	chr1:74924667-74944808	inner
CUST_51205_PI429285431	0.888941	A	0.88811505	A	1.000572668826	0	lncRNA	54823-1_{1..329}	hg19_lincRNAsTranscripts_TCONS_l2_00008966 range=chr15:30121815-30261051 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008966 range=chr15:30121815-30261051 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 30121815	 30122143	-	NA	NA	NA	NA	TJP1	NA	chr15:30111815-30114706	inter
CUST_35554_PI429285431	0.89691955	A	1.6979396	A	0.573943230438078	0	lncRNA	36967-2_{3001..5548}	n342682|CR749489|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5184|NULL|-0.9425640|-0.2877286	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342682|CR749489|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5184|NULL|-0.9425640|-0.2877286	chr5	110850923	110853470	+	NA	NA	NA	NA	C5orf13	NA	chr5:111065000-111085423	inner
CUST_38128_PI429285431	3.3106017	P	3.78151	P	0.721510202313686	0	lncRNA	39201-1_{1..1287}	n381258|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001flf.2||1.0674900|-0.2118847	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n381258|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001flf.2||1.0674900|-0.2118847	chr1	155596546	155597832	-	NA	NA	NA	NA	YY1AP1	NA	chr1:155586546-155628335	inter
CUST_837_PI429285431	0.89121425	A	0.8892621	A	1.00135404315829	0	lncRNA	831-1_{1..510}	"transcript_id ""ENST00000587255.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587255.1"" | genecode_v17"	chr2	 35384665	 35385174	+	ENSG00000226994.2	ENST00000587255.1	AC012593.1	AC012593.1-003	NA	NA	NA	inter
CUST_3411_PI429285431	1.366637	A	1.7971685	A	0.741988380703031	0	lncRNA	3383-1_{1..957}	"transcript_id ""ENST00000447613.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447613.1"" | genecode_v17"	chr9	 43144980	 43145936	-	ENSG00000224303.1	ENST00000447613.1	RP11-327I22.5	RP11-327I22.5-001	LOC100289528	NA	chr9:43134980-43135514	inter
LNCA_21_P0010541	0.9055441	A	0.8968611	A	1.00603674511406	0	lncRNA	ENST00000415910	NA	NA	NA	NA	XLOC_l2_000339	NA	ENST00000415910	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000339), lincRNA [TCONS_l2_00000469]"	chr1:107363363-107380799	hs|1p13.3	Agilent_HUMAN_G3V2	ENST00000415910	ENST00000415910	chr1	107363363	107380799	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4402_PI429285431	3.8019004	P	3.9725451	P	0.888445571006546	0	lncRNA	4352-1_{1..2262}	"transcript_id ""ENST00000569754.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569754.1"" | genecode_v17"	chr12	109301517	109303778	-	ENSG00000260987.1	ENST00000569754.1	RP11-423G4.7	RP11-423G4.7-001	SVOP	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20chr12:109304658-109313778"	NA	inter
LNCA_21_P0008192	0.90498734	A	0.89610654	A	1.00617468674736	0	lncRNA	TCONS_00022073	NA	NA	NA	NA	XLOC_010676	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010676), lincRNA [TCONS_00022073]"	chr13:85456724-85456665	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00022073	TCONS_00022073	chr13	 85456665	 85456724	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004579	0.9047931	A	0.8958506	A	1.00621771892253	0	lncRNA	TCONS_00011081	NA	NA	NA	NA	XLOC_005071	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005071), lincRNA [TCONS_00011081]"	chr5:164668671-164668252	hs|5q34	Agilent_HUMAN_G3V2	TCONS_00011081	TCONS_00011081	chr5	164668252	164668671	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31239_PI429285431	2.3242826	A	2.1051972	A	1.16399543480398	0	lncRNA	33028-1_{1..252}	n337688|L19362|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|70|NULL|-0.8792640|-0.3005183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337688|L19362|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|70|NULL|-0.8792640|-0.3005183	chr15	 34161848	 34162099	-	NA	NA	NA	NA	AVEN	NA	chr15:34158428-34172094	inner
CUST_15126_PI429285431	8.428317	P	8.391221	P	1.02604641837907	0	lncRNA	16786-1_{1..1539}	lnc-ERGIC1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ERGIC1-1:2	chr5	172252538	172254076	+	lnc-ERGIC1-1	lnc-ERGIC1-1:2	XLOC_004636	linc-ERGIC1-1	ERGIC1	NA	chr5:172261223-172262561	inter
CUST_29181_PI429285431	1.3848091	A	0.88988197	A	1.40924957266273	0	lncRNA	30926-1_{1..735}	n326694|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006251|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006251|-1.0540100|-0.1823136	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326694|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006251|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006251|-1.0540100|-0.1823136	chr1	 17050402	 17051136	-	NA	NA	NA	NA	LOC729587	NA	chr1:17060447-17060956	inter
CUST_17262_PI429285431	0.90783924	A	0.8975822	A	1.00713497183738	0	lncRNA	18980-1_{1..1263}	lnc-EIF2AK4-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2AK4-2:3	chr15	 40357422	 40358684	+	lnc-EIF2AK4-2	lnc-EIF2AK4-2:3	XLOC_011219	linc-BUB1B	NA	NA	NA	inter
CUST_3280_PI429285431	0.9084141	A	1.1380394	A	0.852856368779253	0	lncRNA	3258-1_{1..575}	"transcript_id ""ENST00000521048.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521048.1"" | genecode_v17"	chr8	120236044	120236618	-	ENSG00000253972.1	ENST00000521048.1	RP11-4K16.2	RP11-4K16.2-001	MAL2	NA	chr8:120226044-120257913	inner
CUST_44711_PI429285431	2.9165173	A	0.911436	A	4.0141131944465	0	lncRNA	49266-1_{1..2183}	"gi|405778362|ref|NR_003948.2| Homo sapiens HLA complex group 22 (non-protein coding) (HCG22), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|405778362|ref|NR_003948.2| Homo sapiens HLA complex group 22 (non-protein coding) (HCG22), non-coding RNA"	Chr6	 31021227	 31023409	+	285834	NR_003948.2	NA	NA	NA	NA	NA	inter
CUST_33477_PI429285431	0.91890293	A	0.9203428	A	0.999002456047227	0	lncRNA	35051-1_{1..812}	n340213|S77834|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2674|NULL|2.2418400|-0.4969211	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340213|S77834|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2674|NULL|2.2418400|-0.4969211	chr4	123372624	123373435	-	NA	NA	NA	NA	IL2	NA	chr4:123372625-123377650	inner
CUST_27653_PI429285431	3.0961738	P	2.6952434	A	1.32035914133464	0	lncRNA	29231-1_{1..2007}	n324860|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171146|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171146|-1.3259000|-0.4216941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324860|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171146|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171146|-1.3259000|-0.4216941	chr21	 24598733	 24600739	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46359_PI429285431	2.0744395	A	2.2248368	A	0.901002303783334	0	lncRNA	50581-1_{1..2585}	"gi|410170662|ref|XR_110231.3| PREDICTED: Homo sapiens uncharacterized LOC100506731 (LOC100506731), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|410170662|ref|XR_110231.3| PREDICTED: Homo sapiens uncharacterized LOC100506731 (LOC100506731), misc_RNA"	Chr14	 85990776	 85993360	-	100506731	XR_110231.4	NA	NA	NA	NA	NA	inter
CUST_45592_PI429285431	0.898203	A	0.8944406	A	1.00261130047343	0	lncRNA	49981-1_{1..2013}	"gi|337298609|ref|NR_038973.1| Homo sapiens uncharacterized LOC100506733 (LOC100506733), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|337298609|ref|NR_038973.1| Homo sapiens uncharacterized LOC100506733 (LOC100506733), non-coding RNA"	Chr10	 50329884	 50331896	+	100506733	NR_038973.1	NA	NA	NA	NA	NA	inter
CUST_16520_PI429285431	0.9758109	A	0.898175	A	1.05528735599914	0	lncRNA	18220-1_{1..468}	lnc-FNDC1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FNDC1-5:1	chr6	159887379	159887846	+	lnc-FNDC1-5	lnc-FNDC1-5:1	XLOC_005524	linc-WTAP-2	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70"	NA	inter
CUST_39808_PI429285431	1.5521262	A	0.96275693	A	1.50458881434142	0	lncRNA	40717-1_{1..652}	n406218|NR_003673_4|lncRNA|Homosapiens||RefGeneNoncode|NR_003673_4||-0.6468530|-0.2809098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406218|NR_003673_4|lncRNA|Homosapiens||RefGeneNoncode|NR_003673_4||-0.6468530|-0.2809098	chr6	  3023010	  3023661	-	NA	NA	NA	NA	NQO2	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70chr6:3013010-3019994"	NA	inter
CUST_50455_PI429285431	0.9120102	A	0.921951	A	0.993133247141524	0	lncRNA	54161-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030253 range=chrX:73164177-73234961 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030253 range=chrX:73164177-73234961 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 73164177	 73167176	+	NA	NA	NA	NA	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_48268_PI429285431	5.729646	P	6.2592835	P	0.692728771275321	0	lncRNA	52130-2_{3001..4870}	hg19_lincRNAsTranscripts_TCONS_l2_00000991 range=chr1:2568357-2574635 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000991 range=chr1:2568357-2574635 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	  2571357	  2573226	-	NA	NA	NA	NA	TTC34	NA	chr1:2572807-2584635	inner
CUST_29947_PI429285431	4.1990566	P	3.712574	P	1.4010249033138	0	lncRNA	31711-1_{1..406}	n334140|M76743|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196381|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196381|0.2588640|-0.1440238	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334140|M76743|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196381|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196381|0.2588640|-0.1440238	chr19	 43013359	 43013764	-	NA	NA	NA	NA	CEACAM1	NA	chr19:43011458-43032661	inter
CUST_40562_PI429285431	2.8054814	A	2.580576	A	1.16870061233554	0	lncRNA	41319-1_{1..1701}	n409756|NR_034159|lncRNA|Homosapiens||RefGeneNoncode|NR_034159||1.6398700|-0.1885119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409756|NR_034159|lncRNA|Homosapiens||RefGeneNoncode|NR_034159||1.6398700|-0.1885119	chr19	 52095035	 52096735	-	NA	NA	NA	NA	ZNF175	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr19:52085035-52092991"	NA	inter
CUST_10962_PI429285431	10.097943	P	9.953678	P	1.10516746774127	0	lncRNA	12504-1_{1..780}	lnc-HEXB-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HEXB-1:2	chr5	 73635809	 73636588	+	lnc-HEXB-1	lnc-HEXB-1:2	XLOC_004429	linc-HEXB-1	NA	NA	NA	inter
CUST_44177_PI429285431	0.91491884	A	0.9090614	A	1.00406832126326	0	lncRNA	48834-1_{1..2264}	"gi|218931201|ref|NR_024615.1| Homo sapiens ERC2 intronic transcript 1 (non-protein coding) (ERC2-IT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|218931201|ref|NR_024615.1| Homo sapiens ERC2 intronic transcript 1 (non-protein coding) (ERC2-IT1), non-coding RNA"	Chr3	 55691234	 55693497	-	711	NR_024615.1	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90"	NA	inter
CUST_35394_PI429285431	6.8409443	P	7.136732	P	0.814627430869295	0	lncRNA	36801-1_{1..1283}	n342449|BC039470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4942|NULL|-0.9843520|-0.2819150	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342449|BC039470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4942|NULL|-0.9843520|-0.2819150	chr2	138636323	138637605	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49566_PI429285431	2.0218804	A	1.3645319	A	1.57718128883945	0	lncRNA	53356-1_{1..582}	hg19_lincRNAsTranscripts_TCONS_l2_00024911 range=chr6:129845158-129867773 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024911 range=chr6:129845158-129867773 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	129845158	129845739	-	NA	NA	NA	NA	LAMA2	NA	chr6:129835158-129837711	inter
CUST_13592_PI429285431	0.89277995	A	0.89246964	A	1.00021511363522	0	lncRNA	15231-1_{1..724}	lnc-PIWIL4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIWIL4-1:2	chr11	 94373380	 94374103	+	lnc-PIWIL4-1	lnc-PIWIL4-1:2	XLOC_009252	linc-AMOTL1-3	NA	NA	NA	inter
CUST_43749_PI429285431	2.6927557	A	3.086654	P	0.76107033871208	0	lncRNA	48489-1_{1..3000}	"gi|257153369|ref|NR_028395.1| Homo sapiens TSNAX-DISC1 readthrough (TSNAX-DISC1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|257153369|ref|NR_028395.1| Homo sapiens TSNAX-DISC1 readthrough (TSNAX-DISC1), transcript variant 3, non-coding RNA"	Chr1	231664399	231667398	+	100303453	NR_028395.1	NA	NA	NA	NA	NA	inter
CUST_39013_PI429285431	0.92517763	A	0.9214321	A	1.00259957661408	0	lncRNA	39992-2_{3001..3993}	n385327|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wpf.1||-0.4004960|-0.2325456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385327|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wpf.1||-0.4004960|-0.2325456	chr8	   593407	   594399	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70"	NA	inter
CUST_21683_PI429285431	0.9157885	A	1.1151004	A	0.87096587540464	0	lncRNA	23293-1_{1..566}	lnc-CLNS1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CLNS1A-1:1	chr11	 77429226	 77429791	-	lnc-CLNS1A-1	lnc-CLNS1A-1:1	ENSG00000254985.1	RSF1-IT2	RSF1	NA	chr11:77419226-77439456	inner
CUST_13196_PI429285431	0.8946328	A	0.892398	A	1.00155024570956	0	lncRNA	14824-1_{1..601}	lnc-MFSD8-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MFSD8-4:1	chr4	128017487	128018087	-	lnc-MFSD8-4	lnc-MFSD8-4:1	XLOC_004067	linc-ANKRD50-5	NA	"hg19_refFlat_TMEM44:range=chr3:194309258-1943539445'pad=0,hg19_refFlat_TMEM44:range=chr3:194309258-1943539445'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60"	NA	inter
CUST_37457_PI429285431	0.9023061	A	1.1404743	A	0.847821113649066	0	lncRNA	38556-1_{1..441}	n345907|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1456|NULL|-1.3433700|-0.3732298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345907|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1456|NULL|-1.3433700|-0.3732298	chr4	185181993	185182433	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
CUST_38389_PI429285431	0.898814	A	0.89239943	A	1.00445614030597	0	lncRNA	39427-1_{1..1743}	n382296|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ysy.2||-0.3714210|-0.2650115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n382296|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ysy.2||-0.3714210|-0.2650115	chr14	106938454	106940196	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.91;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40"	NA	inter
LNCA_21_P0000936	0.9180883	A	0.9074306	A	1.007414708527	0	lncRNA	ENST00000418557	NA	BC016972	NA	Hs.520684	XLOC_001265	NA	ENST00000418557	THC2609817	NA	"BROAD Institute lincRNA (XLOC_001265), lincRNA [TCONS_00000118]"	chr1:235093198-235093139	hs|1q42.3	Agilent_HUMAN_G3V2	ENST00000418557	ENST00000418557	chr1	235093139	235093198	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47826_PI429285431	9.253304	P	8.525819	P	1.6557501627051	0	lncRNA	51739-1_{1..3000}	"gi|410170958|ref|XR_171122.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410170958|ref|XR_171122.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	XR_171122.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008526	3.9097188	P	3.0972793	P	1.75617851277292	0	lncRNA	TCONS_00023067	NA	NA	NA	NA	XLOC_010971	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010971), lincRNA [TCONS_00023067]"	chr14:24181856-24181797	hs|14q11.2	Agilent_HUMAN_G3V2	TCONS_00023067	TCONS_00023067	chr14	 24181797	 24181856	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16480_PI429285431	3.5380242	P	3.5922215	P	0.963130169316475	0	lncRNA	18178-1_{1..495}	lnc-SELV.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SELV.1-1:1	chr19	 40019263	 40019757	+	lnc-SELV.1-1	lnc-SELV.1-1:1	XLOC_013072	linc-LGALS13	EID2	NA	chr19:40025099-40029553	inter
CUST_7569_PI429285431	8.237509	P	8.062927	P	1.1286373510974	0	lncRNA	9204-1_{1..1955}	lnc-ZNF526-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ZNF526-1:1	chr19	 42659859	 42661813	+	lnc-ZNF526-1	lnc-ZNF526-1:1	ENSG00000249075	XLOC_013083	NA	NA	NA	inter
CUST_39407_PI429285431	5.546832	P	5.7884293	P	0.84580834522655	0	lncRNA	40367-1_{1..686}	n386640|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010qoz.1||-1.3388200|-0.1905684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386640|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010qoz.1||-1.3388200|-0.1905684	chr10	 99477216	 99477901	-	NA	NA	NA	NA	MARVELD1	NA	chr10:99473465-99477909	inner
CUST_37804_PI429285431	9.218975	P	7.9305997	P	2.44252833747118	0	lncRNA	38897-1_{1..249}	n346316|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1866|NULL|-1.2923900|-0.2399415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346316|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1866|NULL|-1.2923900|-0.2399415	chr13	 48337519	 48337767	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7784_PI429285431	5.8652864	P	5.900001	P	0.976224862583155	0	lncRNA	9408-1_{1..1011}	lnc-FAM46C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM46C-1:1	chr1	118321203	118322213	+	lnc-FAM46C-1	lnc-FAM46C-1:1	ENSG00000251057	AL390877.1	NA	"hg19_refFlat_PNRC2:range=chr1:24287948-242883675'pad=0,hg19_refFlat_PNRC2:range=chr1:24287948-242883675'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90"	NA	inter
CUST_51873_PI429285431	4.1561913	P	4.165859	P	0.993321263565604	0	lncRNA	55424-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00012668 range=chr19:53088914-53103361 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012668 range=chr19:53088914-53103361 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 53091914	 53094913	+	NA	NA	NA	NA	ZNF701	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10chr19:53078914-53090427"	NA	inner
CUST_25190_PI429285431	4.316471	P	4.5249825	P	0.865429677543005	0	lncRNA	26721-1_{1..571}	lnc-ZNF286A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF286A-1:1	chr17	 15557758	 15558328	+	lnc-ZNF286A-1	lnc-ZNF286A-1:1	ENSG00000266261.1	RP11-640I15.1	TRIM16	NA	chr17:15547758-15567803	inner
CUST_41803_PI429285431	4.1520815	P	4.4837966	P	0.794591298611474	0	lncRNA	43390-1_{1..84}	ENST00000384916 ncrna:miRNA chromosome:GRCh37:16:56892430:56892513:1 gene:ENSG00000207649 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384916 ncrna:miRNA chromosome:GRCh37:16:56892430:56892513:1 gene:ENSG00000207649 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 56892430	 56892513	+	ENSG00000207649	ENST00000384916	NA	NA	SLC12A3	NA	chr16:56899119-56902513	inter
CUST_7683_PI429285431	4.916034	P	5.2375116	P	0.800249846415224	0	lncRNA	9317-1_{1..1260}	lnc-FMNL1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-FMNL1-1:3	chr17	 43345376	 43346635	+	lnc-FMNL1-1	lnc-FMNL1-1:3	ENSG00000229966	ENST00000500316	MAP3K14	"hg19_refFlat_MAP3K14:range=chr17:43342003-433681115'pad=0,hg19_refFlat_MAP3K14:range=chr17:43342003-433681115'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90chr17:43340488-43355997"	NA	inner
CUST_1733_PI429285431	0.9974259	A	1.2031779	A	0.867086603325641	0	lncRNA	1719-1_{1..546}	"transcript_id ""ENST00000514877.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514877.1"" | genecode_v17"	chr4	 34125128	 34125673	-	ENSG00000248685.1	ENST00000514877.1	RP11-548L20.1	RP11-548L20.1-002	NA	NA	NA	inter
CUST_23123_PI429285431	1.1394043	A	1.9300163	A	0.578098806905067	0	lncRNA	24694-1_{1..905}	lnc-ZNF485-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-ZNF485-2:1	chr10	 44143017	 44143921	+	lnc-ZNF485-2	lnc-ZNF485-2:1	ENSG00000230565.1	ZNF32-AS2	ZNF32	"hg19_refFlat_ZNF32:range=chr10:44139498-441415815'pad=0,hg19_refFlat_ZNF32:range=chr10:44139498-441415815'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70chr10:44139307-44144326"	NA	inter
CUST_2748_PI429285431	2.9879856	P	3.8210127	P	0.561350166374241	0	lncRNA	2732-1_{1..637}	"transcript_id ""ENST00000453348.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453348.1"" | genecode_v17"	chr7	  1778266	  1778902	-	ENSG00000236081.1	ENST00000453348.1	AC074389.9	AC074389.9-001	ELFN1	NA	chr7:1768266-1787590	inner
CUST_30527_PI429285431	3.0588732	A	3.4867609	P	0.743349352595579	0	lncRNA	32307-1_{1..475}	n335685|CR617533|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000296728|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000296728|-1.0971400|-0.1287793	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335685|CR617533|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000296728|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000296728|-1.0971400|-0.1287793	chr7	139723547	139724021	+	NA	NA	NA	NA	TBXAS1	NA	chr7:139713547-139720125	inner
LNCA_21_P0002210	0.9243352	A	0.90991277	A	1.01004700229017	0	lncRNA	TCONS_00003668	NA	NA	NA	NA	XLOC_001459	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001459), lincRNA [TCONS_00003668]"	chr2:47050103-47050162	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00003668	TCONS_00003668	chr2	 47050103	 47050162	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23783_PI429285431	3.6589427	P	4.03598	P	0.770017265652144	0	lncRNA	25348-1_{1..1551}	lnc-SUPT6H-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SUPT6H-2:4	chr17	 26943303	 26944853	+	lnc-SUPT6H-2	lnc-SUPT6H-2:4	ENSG00000227543.3	SPAG5-AS1	KIAA0100	"hg19_refFlat_SGK494:range=chr17:26937496-269411795'pad=0,hg19_refFlat_SGK494:range=chr17:26937496-269411795'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_KIAA0100:range=chr17:26942082-269720745'pad=0,hg19_refFlat_KIAA0100:range=chr17:26942082-269720745'pad=0 3'pad=0 strand=- repeatMasking=none,-97.60chr17:26941458-26954393"	NA	inner
CUST_47036_PI429285431	5.060924	P	4.9582925	P	1.07373017934347	0	lncRNA	51125-2_{3001..4428}	"gi|223029389|ref|NR_026692.1| Homo sapiens CD209 molecule (CD209), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223029389|ref|NR_026692.1| Homo sapiens CD209 molecule (CD209), transcript variant 2, non-coding RNA"	Chr19	  7807879	  7809306	-	30835	NR_026692.1	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZRSR2:range=chrX:15808619-158413655'pad=0,hg19_refFlat_ZRSR2:range=chrX:15808619-158413655'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60"	NA	inter
CUST_11822_PI429285431	5.4052353	P	5.509803	P	0.930083598111154	0	lncRNA	13404-1_{1..871}	lnc-EFCAB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFCAB2-1:1	chr1	245294835	245295705	+	lnc-EFCAB2-1	lnc-EFCAB2-1:1	XLOC_000641	linc-KIF26B	EFCAB2	NA	chr1:245284835-245288530	inter
CUST_5195_PI429285431	1.1884602	A	0.8916801	A	1.22839972972349	0	lncRNA	5136-1_{1..255}	"transcript_id ""ENST00000563031.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563031.1"" | genecode_v17"	chr15	 57769682	 57769936	-	ENSG00000261489.1	ENST00000563031.1	CTD-2515H24.3	CTD-2515H24.3-001	CGNL1	NA	chr15:57759682-57780527	inner
CUST_28100_PI429285431	3.8298812	P	3.772626	P	1.04048430272009	0	lncRNA	29722-1_{1..717}	n325372|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324038|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324038|-1.0845300|-0.3455008	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325372|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324038|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324038|-1.0845300|-0.3455008	chr2	 23094501	 23095217	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11257_PI429285431	0.9967933	A	0.9158812	A	1.05768651931474	0	lncRNA	12815-1_{1..636}	lnc-KLHDC4-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHDC4-1:4	chr16	 87811474	 87812109	-	lnc-KLHDC4-1	lnc-KLHDC4-1:4	XLOC_012055	linc-KLHDC4	NA	NA	NA	inter
CUST_47043_PI429285431	6.590851	P	7.4159293	P	0.564451566852375	0	lncRNA	51132-1_{1..575}	"gi|310123801|ref|XR_109580.1| PREDICTED: Homo sapiens uncharacterized LOC100505555 (LOC100505555), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123801|ref|XR_109580.1| PREDICTED: Homo sapiens uncharacterized LOC100505555 (LOC100505555), misc_RNA"	Chr19	  9898088	  9898662	-	100505555	XR_109580.2	NA	NA	NA	NA	NA	inter
CUST_8840_PI429285431	2.434578	A	1.9210619	A	1.42752508758953	0	lncRNA	10379-1_{1..744}	lnc-RP11-62N21.1.1-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-62N21.1.1-9:2	chr4	135248413	135249156	-	lnc-RP11-62N21.1.1-9	lnc-RP11-62N21.1.1-9:2	ENSG00000251199	RP11-400D2.2	NA	NA	NA	inter
CUST_10703_PI429285431	9.6256	P	9.621309	P	1.0029787221544	0	lncRNA	12239-1_{1..612}	lnc-ZNF599-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF599-3:4	chr19	 35341573	 35342184	-	lnc-ZNF599-3	lnc-ZNF599-3:4	XLOC_013308	linc-ZNF599-3	NA	NA	NA	inter
LNCA_19_P00321631	5.793805	P	5.765606	P	1.01973833221888	0	lncRNA	AK123416	NA	AK123416	NA	Hs.729217	LOC553137	uncharacterized LOC553137	NA	THC2509612	NA	"BROAD Institute lincRNA (XLOC_l2_013080), lincRNA [TCONS_l2_00025449]"	chr6:107220145-107220086	hs|6q21	Agilent_HUMAN_G3V2	AK123416	AK123416	chr6	107220086	107220145	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008758	9.929583	P	9.923332	P	1.00434226344869	0	lncRNA	TCONS_00023741	NA	NA	NA	NA	XLOC_011532	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011532), lincRNA [TCONS_00023741]"	chr15:75515866-75515807	hs|15q24.2	Agilent_HUMAN_G3V2	TCONS_00023741	TCONS_00023741	chr15	 75515807	 75515866	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38159_PI429285431	1.1199274	A	1.0936671	A	1.01836892363621	0	lncRNA	39231-1_{1..3000}	n381382|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001igj.1||-0.1788080|-0.2087638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381382|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001igj.1||-0.1788080|-0.2087638	chr10	  1223252	  1226251	-	NA	NA	NA	NA	ADARB2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30chr10:1223253-1236584"	NA	inner
CUST_12764_PI429285431	1.1218857	A	0.9109879	A	1.15740822370192	0	lncRNA	14387-1_{1..528}	lnc-RPGR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPGR-1:1	chrX	 38659282	 38659809	-	lnc-RPGR-1	lnc-RPGR-1:1	XLOC_008141	linc-RPGR-5	MID1IP1	NA	chrX:38660685-38665785	inter
CUST_32608_PI429285431	3.3274493	A	3.0269241	A	1.23159268185332	0	lncRNA	34268-1_{1..3000}	n339229|BC051706|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1661|NULL|-1.1157600|-0.3236485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339229|BC051706|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1661|NULL|-1.1157600|-0.3236485	chr3	  3416952	  3419951	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50799_PI429285431	0.9078409	A	0.9143616	A	0.995490394125995	0	lncRNA	54453-1_{1..1117}	hg19_lincRNAsTranscripts_TCONS_l2_00004461 range=chr11:29059302-29085806 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004461 range=chr11:29059302-29085806 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 29059302	 29060418	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26379_PI429285431	7.501801	P	7.6221294	P	0.91997821257673	0	lncRNA	27886-1_{1..776}	lnc-MSX2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MSX2-4:1	chr5	173953323	173954098	+	lnc-MSX2-4	lnc-MSX2-4:1	ENSG00000249306.1	RP11-267A15.1	NA	NA	NA	inter
CUST_46593_PI429285431	4.0126915	P	4.6964827	P	0.622527208993679	0	lncRNA	50775-1_{1..680}	"gi|195222727|ref|NR_024050.1| Homo sapiens breast cancer anti-estrogen resistance 4 (non-protein coding) (BCAR4), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|195222727|ref|NR_024050.1| Homo sapiens breast cancer anti-estrogen resistance 4 (non-protein coding) (BCAR4), non-coding RNA"	Chr16	 11913687	 11914366	-	400500	NR_024050.1	NA	NA	NA	NA	NA	inter
CUST_42163_PI429285431	1.192376	A	1.4663695	A	0.827027094569614	0	lncRNA	44197-1_{1..83}	ENST00000583461 ncrna:miRNA chromosome:GRCh37:10:38120817:38120899:1 gene:ENSG00000266800 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583461 ncrna:miRNA chromosome:GRCh37:10:38120817:38120899:1 gene:ENSG00000266800 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 38120817	 38120899	+	ENSG00000266800	ENST00000583461	NA	NA	ZNF248	"hg19_refFlat_ZNF12:range=chr7:6730479-67448045'pad=0,hg19_refFlat_ZNF12:range=chr7:6730479-67448045'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZNF248:range=chr10:38120543-381452385'pad=0,hg19_refFlat_ZNF248:range=chr10:38120543-381452385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40chr10:38110817-38130899"	NA	inner
CUST_48669_PI429285431	6.62108	P	6.8780265	P	0.836857275599455	0	lncRNA	52512-2_{3001..4026}	hg19_lincRNAsTranscripts_TCONS_l2_00014711 range=chr2:96497926-96517535 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014711 range=chr2:96497926-96517535 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 96500926	 96501951	-	NA	NA	NA	NA	LOC400986	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50chr2:96516920-96527535"	NA	inter
CUST_45522_PI429285431	1.3719062	A	1.2085239	A	1.11990961437369	0	lncRNA	49930-1_{1..1604}	"gi|410170591|ref|XR_171056.1| PREDICTED: Homo sapiens uncharacterized LOC101060107 (LOC101060107), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,UCSC,"	">gi|410170591|ref|XR_171056.1| PREDICTED: Homo sapiens uncharacterized LOC101060107 (LOC101060107), misc_RNA"	NA	NA	NA	NA	NA	XR_171056.1	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	Unknown
CUST_37713_PI429285431	2.2289875	A	1.4027326	A	1.77307664360052	0	lncRNA	38808-1_{1..1138}	n346212|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1762|NULL|-1.5837500|-0.2872207	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346212|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1762|NULL|-1.5837500|-0.2872207	chr21	 16133565	 16134702	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25599_PI429285431	2.3592107	A	0.9257769	A	2.70088797072846	0	lncRNA	27129-1_{1..3000}	lnc-FAM40A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM40A-1:1	chr1	110600962	110603961	+	lnc-FAM40A-1	lnc-FAM40A-1:1	ENSG00000258634.1	RP4-773N10.4	FAM40A	"hg19_refFlat_ALX3:range=chr1:110603355-1106132345'pad=0,hg19_refFlat_ALX3:range=chr1:110603355-1106132345'pad=0 3'pad=0 strand=- repeatMasking=none,-101.40chr1:110590962-110597263"	NA	inner
CUST_10289_PI429285431	5.320736	P	4.9779105	P	1.26823799135828	0	lncRNA	11815-1_{1..538}	lnc-KLHL31-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL31-2:2	chr6	 53658081	 53658618	-	lnc-KLHL31-2	lnc-KLHL31-2:2	XLOC_005748	linc-KLHL31-1	LRRC1	NA	chr6:53659778-53668505	inter
CUST_29478_PI429285431	4.72799	P	4.340873	P	1.30777740265598	0	lncRNA	31236-1_{1..565}	n332900|AF086155|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067034|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067034|-1.0599700|-0.2340293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332900|AF086155|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067034|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067034|-1.0599700|-0.2340293	chr3	 12548553	 12549117	+	NA	NA	NA	NA	LOC100129480	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00chr3:12581280-12586963"	NA	inner
CUST_48193_PI429285431	1.4315077	A	0.91283715	A	1.43263446042379	0	lncRNA	52056-1_{1..923}	"gi|410170213|ref|XR_172490.1| PREDICTED: Homo sapiens WAS protein family homolog 3 pseudogene (WASH3P), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170213|ref|XR_172490.1| PREDICTED: Homo sapiens WAS protein family homolog 3 pseudogene (WASH3P), misc_RNA"	NA	NA	NA	NA	NA	XR_172490.1	NA	NA	NA	NA	NA	Unknown
CUST_13424_PI429285431	10.493808	P	10.063244	P	1.34776036059971	0	lncRNA	15062-1_{1..320}	lnc-ADAMTS9-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAMTS9-3:1	chr3	 64973691	 64974010	-	lnc-ADAMTS9-3	lnc-ADAMTS9-3:1	XLOC_003149	linc-ADAMTS9-2	NA	NA	NA	inter
CUST_13394_PI429285431	1.3087815	A	0.9141774	A	1.31458196710483	0	lncRNA	15031-1_{1..773}	lnc-AC008686.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC008686.1-1:1	chr19	 13789861	 13790633	-	lnc-AC008686.1-1	lnc-AC008686.1-1:1	XLOC_013238	linc-CACNA1A-3	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-17.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70"	NA	inter
CUST_15863_PI429285431	1.3841767	A	1.0079409	A	1.29795089202552	0	lncRNA	17552-1_{1..332}	lnc-HACE1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HACE1-3:1	chr6	104951380	104951711	-	lnc-HACE1-3	lnc-HACE1-3:1	XLOC_005793	linc-ASCC3-2	NA	NA	NA	inter
CUST_21808_PI429285431	3.049212	A	3.494903	P	0.734232560927022	0	lncRNA	23418-1_{1..785}	lnc-GOLGA6L9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GOLGA6L9-1:1	chr15	 82726234	 82727018	+	lnc-GOLGA6L9-1	lnc-GOLGA6L9-1:1	ENSG00000259206.1	RP13-608F4.8	GOLGA6L9	NA	chr15:82716234-82731587	inner
CUST_10498_PI429285431	2.672482	A	2.170142	A	1.41650922766923	0	lncRNA	12026-1_{1..3000}	lnc-KDM4C-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KDM4C-7:1	chr9	  7960826	  7963825	+	lnc-KDM4C-7	lnc-KDM4C-7:1	XLOC_007279	linc-TYRP1-4	NA	NA	NA	inter
CUST_21659_PI429285431	6.921117	P	7.3045683	P	0.766601486100491	0	lncRNA	23269-2_{3001..3897}	lnc-CDK3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK3-1:1	chr17	 74004379	 74005275	+	lnc-CDK3-1	lnc-CDK3-1:1	ENSG00000261408.1	RP11-685I11.1	EVPL	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-53.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90chr17:74002927-74012079"	NA	inter
CUST_18427_PI429285431	0.88680446	A	0.8871004	A	0.9997948910611	0	lncRNA	20151-1_{1..3000}	lnc-LRRC9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-LRRC9-1:1	chr14	 60530041	 60533040	+	lnc-LRRC9-1	lnc-LRRC9-1:1	ENSG00000131951	LRRC9	NA	NA	NA	inter
CUST_41665_PI429285431	1.4326948	A	1.7561705	A	0.799142285628767	0	lncRNA	43090-1_{1..72}	ENST00000385079 ncrna:miRNA chromosome:GRCh37:9:123007257:123007328:-1 gene:ENSG00000207814 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385079 ncrna:miRNA chromosome:GRCh37:9:123007257:123007328:-1 gene:ENSG00000207814 gene_biotype:miRNA transcript_biotype:miRNA	chr9	123007257	123007328	-	ENSG00000207814	ENST00000385079	NA	NA	NA	NA	NA	inter
CUST_27933_PI429285431	1.1413116	A	1.497222	A	0.781376406818664	0	lncRNA	29535-1_{1..617}	n325178|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332141|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332141|-0.5143270|-0.3339695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325178|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332141|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332141|-0.5143270|-0.3339695	chr2	111739330	111739946	+	NA	NA	NA	NA	ACOXL	NA	chr2:111729330-111763928	inner
CUST_30109_PI429285431	2.3651118	A	2.5238464	A	0.89581044935441	0	lncRNA	31882-1_{1..592}	n334657|AF412402|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243011|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243011|0.7417290|-0.2175884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334657|AF412402|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243011|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243011|0.7417290|-0.2175884	chr19	 54041414	 54042005	+	NA	NA	NA	NA	ZNF331	NA	chr19:54031414-54083523	inner
CUST_17713_PI429285431	3.8450198	P	3.9446273	P	0.933286867276068	0	lncRNA	19443-2_{3001..5491}	lnc-CDH12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CDH12-1:1	chr5	 21344294	 21346784	-	lnc-CDH12-1	lnc-CDH12-1:1	XLOC_004752	linc-CDH18-1	NA	NA	NA	inter
CUST_14_PI429285431	5.318777	P	5.6583595	P	0.790269974171978	0	lncRNA	13-1_{1..757}	"transcript_id ""ENST00000523608.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000523608.2"" | genecode_v17"	chr7	 27278862	 27279618	-	ENSG00000253308.2	ENST00000523608.2	RP1-170O19.17	RP1-170O19.17-001	EVX1	NA	chr7:27282164-27286192	inter
CUST_5197_PI429285431	0.9045829	A	0.908292	A	0.997432349859786	0	lncRNA	5138-1_{1..634}	"transcript_id ""ENST00000567865.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567865.1"" | genecode_v17"	chr15	 58012493	 58013126	+	ENSG00000261219.1	ENST00000567865.1	RP11-344A16.2	RP11-344A16.2-001	GCOM1	NA	chr15:58002493-58009755	inter
CUST_46545_PI429285431	5.4317255	P	5.7313147	P	0.812483713984251	0	lncRNA	50730-1_{1..1368}	"gi|224465207|ref|NR_027077.1| Homo sapiens uncharacterized LOC283761 (LOC283761), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224465207|ref|NR_027077.1| Homo sapiens uncharacterized LOC283761 (LOC283761), transcript variant 4, non-coding RNA"	Chr15	 90048161	 90049528	-	283761	NR_027077.1	NA	NA	NA	NA	NA	inter
CUST_30497_PI429285431	9.580857	P	9.664163	P	0.943892195515473	0	lncRNA	32277-1_{1..805}	n335651|CR609594|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000288789|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000288789|-0.8230220|-0.3926049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335651|CR609594|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000288789|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000288789|-0.8230220|-0.3926049	chr22	 47080307	 47081111	-	NA	NA	NA	NA	GRAMD4	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70chr22:47070307-47075688"	NA	inner
CUST_21948_PI429285431	0.91307616	A	0.90038	A	1.00883914405498	0	lncRNA	23556-1_{1..2631}	lnc-GLIPR1L1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLIPR1L1-2:3	chr12	 75434738	 75437368	+	lnc-GLIPR1L1-2	lnc-GLIPR1L1-2:3	ENSG00000257434.1	RP11-81K13.1	KCNC2	"hg19_refFlat_KCNC2:range=chr12:75436885-756017635'pad=0,hg19_refFlat_KCNC2:range=chr12:75436885-756017635'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_KCNC2:range=chr12:75436093-756017635'pad=0,hg19_refFlat_KCNC2:range=chr12:75436093-756017635'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_KCNC2:range=chr12:75434877-756017635'pad=0,hg19_refFlat_KCNC2:range=chr12:75434877-756017635'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr12:75433896-75447150"	NA	inner
CUST_11408_PI429285431	5.040358	P	5.5099854	P	0.722151081211924	0	lncRNA	12974-1_{1..2289}	lnc-GARS-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GARS-4:2	chr7	 30443218	 30445506	+	lnc-GARS-4	lnc-GARS-4:2	XLOC_006035	linc-GARS-3	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20"	NA	inter
CUST_46055_PI429285431	7.4685426	P	8.790562	P	0.399974685648496	0	lncRNA	50330-1_{1..1641}	"gi|100413100|ref|NR_003084.1| Homo sapiens homeobox C5 (HOXC5), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|100413100|ref|NR_003084.1| Homo sapiens homeobox C5 (HOXC5), transcript variant 2, non-coding RNA"	Chr12	 54410642	 54412282	+	3222	NR_003084.1	NA	NA	NA	NA	NA	inter
LNCA_19_P00321743	6.468271	P	6.7231455	P	0.838060034315349	0	lncRNA	XR_110148	XR_110148	XR_110148	NA	NA	LOC100130938	uncharacterized LOC100130938	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100130938 (LOC100130938), miscRNA [XR_110148]"	chr18:59273599-59273540	hs|18q21.33	Agilent_HUMAN_G3V2	XR_110148	XR_110148	chr18	 59273540	 59273599	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17173_PI429285431	0.8957802	A	0.8957831	A	0.999997989875197	0	lncRNA	18884-1_{1..408}	lnc-MMADHC-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MMADHC-1:2	chr2	150713965	150714372	-	lnc-MMADHC-1	lnc-MMADHC-1:2	XLOC_002352	linc-MMADHC-2	NA	NA	NA	inter
LNCA_21_P0004886	2.8093376	A	0.8977163	A	3.76231671171231	0	lncRNA	TCONS_00011821	NA	NA	NA	NA	XLOC_005304	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005304), lincRNA [TCONS_00011821]"	chr6:46184527-46184586	hs|6p21.1	Agilent_HUMAN_G3V2	TCONS_00011821	TCONS_00011821	chr6	 46184527	 46184586	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12392_PI429285431	3.258565	P	3.8022878	P	0.685998439646818	0	lncRNA	14005-1_{1..1075}	lnc-WSB1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WSB1-2:1	chr17	 25664981	 25666055	+	lnc-WSB1-2	lnc-WSB1-2:1	XLOC_012150	linc-KSR1	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.10"	NA	inter
CUST_22621_PI429285431	1.847959	A	1.7815608	A	1.04709925322213	0	lncRNA	24207-1_{1..426}	lnc-GGCT-1:23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GGCT-1:23	chr7	 30601082	 30601507	-	lnc-GGCT-1	lnc-GGCT-1:23	ENSG00000196295.5	AC005154.6	NA	NA	NA	inter
CUST_51243_PI429285431	2.6026728	A	1.8111839	A	1.73085983498219	0	lncRNA	54856-1_{1..797}	hg19_lincRNAsTranscripts_TCONS_l2_00008934 range=chr15:23187064-23189790 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008934 range=chr15:23187064-23189790 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 23187064	 23187860	-	NA	NA	NA	NA	NA	"hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20"	NA	inter
CUST_24271_PI429285431	2.989438	A	3.1645947	A	0.885671315657673	0	lncRNA	25822-1_{1..522}	lnc-CCDC114-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC114-1:2	chr19	 48824978	 48825499	-	lnc-CCDC114-1	lnc-CCDC114-1:2	ENSG00000248146.1	CTC-241F20.2	CCDC114	NA	chr19:48814978-48823332	inter
CUST_36667_PI429285431	1.745581	A	1.1293352	A	1.53288110346338	0	lncRNA	37855-3_{6001..6548}	n345160|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_709|NULL|-1.3084800|-0.3191685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345160|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_709|NULL|-1.3084800|-0.3191685	chr12	 32563112	 32563659	+	NA	NA	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-57.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-25.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0,hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-20.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.81;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10"	NA	inter
CUST_43201_PI429285431	0.9100658	A	0.9159127	A	0.995955439107786	0	lncRNA	48015-1_{1..549}	ENST00000597260 havana:sense_intronic chromosome:GRCh37:19:41452252:41453355:1 gene:ENSG00000269353 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000597260 havana:sense_intronic chromosome:GRCh37:19:41452252:41453355:1 gene:ENSG00000269353 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 41452252	 41452800	+	ENSG00000269353	ENST00000597260	NA	NA	NA	NA	NA	inter
CUST_44963_PI429285431	2.9482684	A	4.0913267	P	0.45279869332637	0	lncRNA	49474-1_{1..812}	"gi|397139212|ref|XR_158826.1| PREDICTED: Homo sapiens uncharacterized LOC100996437 (LOC100996437), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|397139212|ref|XR_158826.1| PREDICTED: Homo sapiens uncharacterized LOC100996437 (LOC100996437), misc_RNA"	Chr7	 66130972	 66131783	+	100996437	XR_158826.2	NA	NA	NA	NA	NA	inter
CUST_23989_PI429285431	5.775894	P	6.0781436	P	0.810986834982753	0	lncRNA	25544-1_{1..434}	lnc-SMARCC2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMARCC2-5:1	chr12	 56507425	 56507858	-	lnc-SMARCC2-5	lnc-SMARCC2-5:1	ENSG00000257553.1	RP11-603J24.17	ZC3H10	"hg19_refFlat_PA2G4:range=chr12:56498522-565066725'pad=0,hg19_refFlat_PA2G4:range=chr12:56498522-565066725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20chr12:56512030-56516278"	NA	inner
CUST_26454_PI429285431	1.9283845	A	1.1068932	A	1.76723181929813	0	lncRNA	27962-1_{1..714}	lnc-LINC00273-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LINC00273-3:1	chr16	 34258132	 34258845	-	lnc-LINC00273-3	lnc-LINC00273-3:1	ENSG00000261566.1	CTD-2144E22.6	NA	NA	NA	inter
CUST_50363_PI429285431	3.615041	P	3.169969	P	1.3613820567498	0	lncRNA	54077-1_{1..405}	hg19_lincRNAsTranscripts_TCONS_l2_00030093 range=chr9:140065380-140066033 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030093 range=chr9:140065380-140066033 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	140065380	140065784	-	NA	NA	NA	NA	GRIN1	NA	chr9:140055380-140063214	inter
CUST_1623_PI429285431	2.1062038	A	2.0298648	A	1.05433913952225	0	lncRNA	1609-1_{1..549}	"transcript_id ""ENST00000415410.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415410.1"" | genecode_v17"	chr3	194500958	194501506	+	ENSG00000240295.1	ENST00000415410.1	AC090505.2	AC090505.2-001	NA	NA	NA	inter
CUST_50721_PI429285431	6.0270624	P	6.2224345	P	0.873347612991565	0	lncRNA	54390-1_{1..575}	hg19_lincRNAsTranscripts_TCONS_l2_00003176 range=chr10:94966811-94967747 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003176 range=chr10:94966811-94967747 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 94966811	 94967385	+	NA	NA	NA	NA	NA	"hg19_refFlat_XRCC6:range=chr22:42018009-420598195'pad=0,hg19_refFlat_XRCC6:range=chr22:42018009-420598195'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30"	NA	inter
CUST_15295_PI429285431	1.3031312	A	1.081424	A	1.16611267912751	0	lncRNA	16972-1_{1..552}	lnc-ZNF623-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF623-1:1	chr8	144750389	144750940	+	lnc-ZNF623-1	lnc-ZNF623-1:1	XLOC_006954	linc-ZNF707	NA	NA	NA	inter
CUST_22764_PI429285431	5.256329	P	5.432272	P	0.885188737155081	0	lncRNA	24346-1_{1..516}	lnc-RP11-867G23.8.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-867G23.8.1-1:1	chr11	 66107254	 66107769	+	lnc-RP11-867G23.8.1-1	lnc-RP11-867G23.8.1-1:1	ENSG00000254756.1	RP11-867G23.12	BRMS1	"hg19_refFlat_RIN1:range=chr11:66099747-661038735'pad=0,hg19_refFlat_RIN1:range=chr11:66099747-661038735'pad=0 3'pad=0 strand=- repeatMasking=none,-105.10chr11:66104804-66112582"	NA	inner
CUST_20478_PI429285431	1.9747642	A	0.89462286	A	2.11424320216237	0	lncRNA	22121-1_{1..289}	lnc-C12orf45-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C12orf45-1:1	chr12	105467543	105467831	+	lnc-C12orf45-1	lnc-C12orf45-1:1	ENSG00000257886.1	RP11-61E11.1	ALDH1L2	"hg19_refFlat_ALDH1L2:range=chr12:105418202-1054782145'pad=0,hg19_refFlat_ALDH1L2:range=chr12:105418202-1054782145'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10chr12:105457543-105477799"	NA	inner
CUST_26732_PI429285431	6.4163733	P	7.023346	P	0.656572986871336	0	lncRNA	28227-1_{1..1205}	n5195|U62668|mRNAlikelncRNA|Homosapiens|2G7|NONCODEv2.0|n5195|NULL|-1.5906100|-0.2300309	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n5195|U62668|mRNAlikelncRNA|Homosapiens|2G7|NONCODEv2.0|n5195|NULL|-1.5906100|-0.2300309	chr11	  1917988	  1919192	+	NA	NA	NA	NA	LSP1	NA	chr11:1907988-1913493	inter
CUST_33946_PI429285431	3.099851	A	4.1642566	P	0.478169627300508	0	lncRNA	35486-1_{1..536}	n340746|AK000454|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3209|NULL|-0.9352020|-0.2497308	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340746|AK000454|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3209|NULL|-0.9352020|-0.2497308	chr17	 48704392	 48704927	-	NA	NA	NA	NA	ABCC3	NA	chr17:48712218-48719301	inter
CUST_45851_PI429285431	4.528171	P	4.6962175	P	0.890047045377771	0	lncRNA	50181-1_{1..1262}	"gi|260763913|ref|NR_029192.1| Homo sapiens transient receptor potential cation channel, subfamily C, member 2-like (LOC100133315), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|260763913|ref|NR_029192.1| Homo sapiens transient receptor potential cation channel, subfamily C, member 2-like (LOC100133315), non-coding RNA"	Chr11	 71576555	 71577816	-	100133315	NR_029192.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10"	NA	inter
CUST_26323_PI429285431	1.8059671	A	0.9308666	A	1.83413585023158	0	lncRNA	27830-1_{1..546}	lnc-PRPS1L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRPS1L1-1:1	chr7	 18470102	 18470647	-	lnc-PRPS1L1-1	lnc-PRPS1L1-1:1	ENSG00000225000.1	AC010082.2	HDAC9	NA	chr7:18460102-18480361	inner
CUST_43131_PI429285431	2.5515985	A	3.4086561	P	0.552077381298822	0	lncRNA	47945-1_{1..299}	ENST00000562094 havana:lincRNA chromosome:GRCh37:HG536_PATCH:69736406:69741581:-1 gene:ENSG00000260679 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000562094 havana:lincRNA chromosome:GRCh37:HG536_PATCH:69736406:69741581:-1 gene:ENSG00000260679 gene_biotype:lincRNA transcript_biotype:lincRNA	chrHG536_PATCH	 69736406	 69736704	-	ENSG00000260679	ENST00000562094	NA	NA	NA	NA	NA	Unknown
CUST_26442_PI429285431	4.807516	P	4.4566526	P	1.27532363334013	0	lncRNA	27950-1_{1..592}	lnc-WWP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WWP2-1:1	chr16	 69776038	 69776629	+	lnc-WWP2-1	lnc-WWP2-1:1	ENSG00000262136.1	CTD-2033A16.3	NOB1	"hg19_refFlat_NOB1:range=chr16:69776235-697888135'pad=0,hg19_refFlat_NOB1:range=chr16:69776235-697888135'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40chr16:69775774-69786466"	NA	inner
CUST_32893_PI429285431	0.90740955	A	1.3952833	A	0.713075257047419	0	lncRNA	34520-1_{1..918}	n339561|BC039673|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2003|NULL|-1.2251400|-0.2481838	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n339561|BC039673|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2003|NULL|-1.2251400|-0.2481838	chr20	  4409710	  4410627	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22932_PI429285431	2.4893546	A	2.208415	A	1.21498592413051	0	lncRNA	24508-1_{1..418}	lnc-TUBA1C-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUBA1C-1:4	chr12	 49541446	 49541863	+	lnc-TUBA1C-1	lnc-TUBA1C-1:4	ENSG00000258017.1	RP11-386G11.10	NA	NA	NA	inter
CUST_4283_PI429285431	0.91258734	A	0.9079597	A	1.00321278558671	0	lncRNA	4239-1_{1..712}	"transcript_id ""ENST00000541885.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000541885.1"" | genecode_v17"	chr12	 64900946	 64901657	-	ENSG00000256199.1	ENST00000541885.1	RP11-439H13.2	RP11-439H13.2-001	TBK1	NA	chr12:64890946-64895899	inter
CUST_17208_PI429285431	0.91104925	A	0.9007316	A	1.00717728412874	0	lncRNA	18922-1_{1..327}	lnc-C7orf41-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C7orf41-1:1	chr7	 30241704	 30242030	+	lnc-C7orf41-1	lnc-C7orf41-1:1	XLOC_006034	linc-ZNRF2	NA	NA	NA	inter
CUST_36449_PI429285431	0.8965442	A	0.90557516	A	0.993759767171395	0	lncRNA	37662-1_{1..3000}	n344962|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_511|NULL|-1.2973400|-0.3427392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344962|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_511|NULL|-1.2973400|-0.3427392	chr7	 96266551	 96269550	+	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
CUST_15590_PI429285431	1.5869175	A	1.8080562	A	0.857888049523818	0	lncRNA	17277-1_{1..936}	lnc-ZNF664-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF664-2:4	chr12	124575119	124576054	+	lnc-ZNF664-2	lnc-ZNF664-2:4	XLOC_009926	linc-FAM101A-3	ZNF664-FAM101A	NA	chr12:124565119-124586008	inner
CUST_25114_PI429285431	4.4963565	P	4.229798	P	1.20293484215594	0	lncRNA	26652-1_{1..683}	lnc-SRGAP3-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRGAP3-1:7	chr3	  9439108	  9439790	-	lnc-SRGAP3-1	lnc-SRGAP3-1:7	ENSG00000206573.4	RP11-58B17.1	LOC100652926	NA	chr3:9435634-9438752	inter
CUST_26453_PI429285431	1.5833515	A	1.0254949	A	1.47208053405714	0	lncRNA	27961-1_{1..489}	lnc-TBC1D8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBC1D8-2:1	chr2	101593178	101593666	-	lnc-TBC1D8-2	lnc-TBC1D8-2:1	ENSG00000230140.1	AC016738.3	NPAS2	NA	chr2:101583178-101603623	inner
CUST_46702_PI429285431	11.7405815	P	12.132296	P	0.76222323928572	0	lncRNA	50861-1_{1..2532}	"gi|379139238|ref|NR_046418.1| Homo sapiens charged multivesicular body protein 1A (CHMP1A), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379139238|ref|NR_046418.1| Homo sapiens charged multivesicular body protein 1A (CHMP1A), transcript variant 3, non-coding RNA"	Chr16	 89710839	 89713370	-	5119	NR_046418.2	NA	NA	NA	NA	NA	inter
CUST_42158_PI429285431	1.223237	A	1.0807449	A	1.10381018298146	0	lncRNA	44192-1_{1..98}	ENST00000384986 ncrna:miRNA chromosome:GRCh37:13:100008385:100008482:1 gene:ENSG00000207719 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384986 ncrna:miRNA chromosome:GRCh37:13:100008385:100008482:1 gene:ENSG00000207719 gene_biotype:miRNA transcript_biotype:miRNA	chr13	100008385	100008482	+	ENSG00000207719	ENST00000384986	NA	NA	UBAC2	NA	chr13:99998385-100018482	inter
CUST_23496_PI429285431	0.9267419	A	1.1038145	A	0.884495924178444	0	lncRNA	25063-1_{1..374}	lnc-GPR39-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR39-1:1	chr2	133424245	133424618	+	lnc-GPR39-1	lnc-GPR39-1:1	ENSG00000230065.1	AC010974.3	NCKAP5	NA	chr2:133429372-133434563	inner
CUST_20073_PI429285431	8.10272	P	8.063998	P	1.02720348341787	0	lncRNA	21722-1_{1..433}	lnc-CLEC3A-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CLEC3A-4:1	chr16	 79135497	 79135929	+	lnc-CLEC3A-4	lnc-CLEC3A-4:1	ENSG00000260479.1	RP11-556H2.3	WWOX	NA	chr16:79125497-79145651	inner
CUST_31277_PI429285431	8.129593	P	7.714402	P	1.33347520567015	0	lncRNA	33066-1_{1..2167}	n337738|AK056173|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|120|NULL|-0.5140280|-0.2161551	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337738|AK056173|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|120|NULL|-0.5140280|-0.2161551	chr1	 18810311	 18812477	+	NA	NA	NA	NA	KLHDC7A	NA	chr1:18807424-18812493	inner
CUST_17479_PI429285431	0.899549	A	0.9041513	A	0.996815011601916	0	lncRNA	19206-1_{1..689}	lnc-DRD5-10:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DRD5-10:9	chr4	 11773329	 11774017	+	lnc-DRD5-10	lnc-DRD5-10:9	XLOC_003457	linc-CPEB2-10	NA	NA	NA	inter
CUST_43049_PI429285431	3.2191253	P	3.6494136	P	0.742113470746037	0	lncRNA	46723-1_{1..126}	ENST00000408513 ncrna:snRNA chromosome:GRCh37:4:89127579:89127704:-1 gene:ENSG00000221440 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408513 ncrna:snRNA chromosome:GRCh37:4:89127579:89127704:-1 gene:ENSG00000221440 gene_biotype:snRNA transcript_biotype:snRNA	chr4	 89127579	 89127704	-	ENSG00000221440	ENST00000408513	NA	NA	NA	NA	NA	inner
CUST_3592_PI429285431	1.0380603	A	1.9919807	A	0.516227749571886	0	lncRNA	3562-1_{1..372}	"transcript_id ""ENST00000413757.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413757.1"" | genecode_v17"	chr10	  3577304	  3577675	-	ENSG00000236892.1	ENST00000413757.1	RP11-482E14.2	RP11-482E14.2-002	NA	NA	NA	inter
CUST_23101_PI429285431	2.2508895	A	3.178012	P	0.525906232729293	0	lncRNA	24672-1_{1..377}	lnc-C17orf46-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf46-1:1	chr17	 43318478	 43318854	-	lnc-C17orf46-1	lnc-C17orf46-1:1	ENSG00000233175.1	AC138150.4	FMNL1	"hg19_refFlat_FMNL1:range=chr17:43299492-433239635'pad=0,hg19_refFlat_FMNL1:range=chr17:43299492-433239635'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10chr17:43308478-43324685"	NA	inner
CUST_7681_PI429285431	0.9092467	A	0.911548	A	0.998406131952365	0	lncRNA	9315-1_{1..3000}	lnc-HNRNPA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-HNRNPA3-1:1	chr2	178110372	178113371	+	lnc-HNRNPA3-1	lnc-HNRNPA3-1:1	ENSG00000245460	ENST00000469031	NFE2L2	"hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90chr2:178100372-178121509"	NA	inner
CUST_47720_PI429285431	0.90861183	A	0.90122133	A	1.00513584772109	0	lncRNA	51680-2_{3001..6000}	"gi|385137061|ref|NR_047599.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 29, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137061|ref|NR_047599.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 29, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047599.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008261	0.92147374	A	0.9207659	A	1.00049075768245	0	lncRNA	TCONS_00022302	NA	NA	NA	NA	XLOC_010679	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010679), lincRNA [TCONS_00022302]"	chr13:85691342-85687077	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00022302	TCONS_00022302	chr13	 85687077	 85691342	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1862_PI429285431	10.6905985	P	9.500571	P	2.28157092159477	0	lncRNA	1852-1_{1..974}	"transcript_id ""ENST00000514608.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514608.1"" | genecode_v17"	chr4	119990479	119991452	-	ENSG00000249356.1	ENST00000514608.1	RP11-21I10.2	RP11-21I10.2-001	SYNPO2	NA	chr4:119980479-119982402	inter
CUST_46654_PI429285431	6.120459	P	7.388256	P	0.415293443408764	0	lncRNA	50826-2_{3001..3282}	"gi|338827677|ref|NR_040072.1| Homo sapiens NDRG family member 4 (NDRG4), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338827677|ref|NR_040072.1| Homo sapiens NDRG family member 4 (NDRG4), transcript variant 8, non-coding RNA"	Chr16	 58537047	 58537328	+	65009	NR_040072.1	NA	NA	NA	NA	NA	inter
CUST_28850_PI429285431	6.6001744	P	6.8849206	P	0.820886006994456	0	lncRNA	30558-1_{1..917}	n326265|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088207|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088207|1.2660800|-0.1977140	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326265|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088207|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088207|1.2660800|-0.1977140	chr1	205489034	205489950	+	NA	NA	NA	NA	MFSD4	NA	chr1:205538112-205559089	inner
CUST_5470_PI429285431	0.9096547	A	0.90972525	A	0.999951099662072	0	lncRNA	5403-1_{1..497}	"transcript_id ""ENST00000595007.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595007.1"" | genecode_v17"	chr16	 26329428	 26329924	+	ENSG00000231876.2	ENST00000595007.1	AC009158.1	AC009158.1-004	NA	NA	NA	inter
LNCA_21_P0012496	0.9194636	A	1.4305332	A	0.701702009962179	0	lncRNA	BC041484	NA	BC041484	NA	Hs.436357	XLOC_l2_009820	NA	NA	THC2506682	NA	"BROAD Institute lincRNA (XLOC_l2_009820), lincRNA [TCONS_l2_00019858]"	chr3:112051509-112051568	hs|3q13.2	Agilent_HUMAN_G3V2	BC041484	BC041484	chr3	112051509	112051568	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3557_PI429285431	2.0269756	A	2.3861277	A	0.779622644466933	0	lncRNA	3527-1_{1..382}	"transcript_id ""ENST00000427778.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427778.1"" | genecode_v17"	chr9	132264269	132264650	+	ENSG00000239353.1	ENST00000427778.1	RP11-492E3.51	RP11-492E3.51-001	NA	NA	NA	inter
CUST_22957_PI429285431	4.2612996	P	4.6233997	P	0.778031191740891	0	lncRNA	24533-1_{1..355}	lnc-WFDC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-WFDC2-1:1	chr20	 44118632	 44118986	+	lnc-WFDC2-1	lnc-WFDC2-1:1	ENSG00000237464.1	RP3-461P17.9	WFDC2	NA	chr20:44108632-44110172	inter
CUST_15447_PI429285431	1.1134667	A	0.8942458	A	1.16410476406892	0	lncRNA	17135-1_{1..1318}	lnc-C1orf124-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf124-3:1	chr1	231455727	231457044	+	lnc-C1orf124-3	lnc-C1orf124-3:1	XLOC_000609	linc-C1orf124-2	NA	NA	NA	inter
CUST_41083_PI429285431	8.33556	P	8.571187	P	0.849315803481812	0	lncRNA	41768-1_{1..84}	ENST00000516053 ncrna:miRNA chromosome:GRCh37:11:34963384:34963467:1 gene:ENSG00000251862 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516053 ncrna:miRNA chromosome:GRCh37:11:34963384:34963467:1 gene:ENSG00000251862 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 34963384	 34963467	+	ENSG00000251862	ENST00000516053	NA	NA	PDHX	NA	chr11:34953384-34973467	inner
CUST_31799_PI429285431	1.9135207	A	2.1564784	A	0.845011159882759	0	lncRNA	33537-1_{1..1107}	n338341|BC035239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|735|NULL|-1.2214100|-0.2303820	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338341|BC035239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|735|NULL|-1.2214100|-0.2303820	chr14	 64010286	 64011392	+	NA	NA	NA	NA	PPP2R5E	NA	chr14:64000286-64010079	inter
LNCA_21_P0005375	0.9157676	A	0.9100068	A	1.00400106525283	0	lncRNA	THC2666780	NA	NA	NA	NA	XLOC_006062	NA	NA	THC2666780	NA	"BROAD Institute lincRNA (XLOC_006062), lincRNA [TCONS_00013427]"	chr7:041976046-041976105	hs|7p14.1	Agilent_HUMAN_G3V2	THC2666780	THC2666780	chr7	 41976046	 41976105	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008674	6.063642	P	6.7235246	P	0.632929799855211	0	lncRNA	TCONS_00023514	NA	NA	NA	NA	XLOC_011358	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011358), lincRNA [TCONS_00023514]"	chr15:93584008-93584067	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00023514	TCONS_00023514	chr15	 93584008	 93584067	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48090_PI429285431	2.321449	A	1.5914944	A	1.65858689693229	0	lncRNA	51966-1_{1..906}	"gi|397138356|ref|XR_159462.1| PREDICTED: Homo sapiens HLA class II histocompatibility antigen, DR beta 3 chain-like (LOC100996809), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138356|ref|XR_159462.1| PREDICTED: Homo sapiens HLA class II histocompatibility antigen, DR beta 3 chain-like (LOC100996809), misc_RNA"	NA	NA	NA	NA	NA	XR_159462.1	NA	NA	NA	NA	NA	Unknown
CUST_24293_PI429285431	1.3712773	A	1.4188632	A	0.967554008962303	0	lncRNA	25844-1_{1..781}	lnc-SENP8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SENP8-1:1	chr15	 72332277	 72333057	+	lnc-SENP8-1	lnc-SENP8-1:1	ENSG00000261632.1	RP11-390D11.1	MYO9A	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-26.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20chr15:72322277-72342606"	NA	inner
CUST_24603_PI429285431	0.89801705	A	0.888685	A	1.00648944997124	0	lncRNA	26152-1_{1..315}	lnc-SGSM3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SGSM3-1:1	chr22	 40786234	 40786548	+	lnc-SGSM3-1	lnc-SGSM3-1:1	ENSG00000254994.1	RP5-1042K10.13	SGSM3	NA	chr22:40776234-40796467	inner
CUST_2809_PI429285431	9.620072	P	9.558908	P	1.04330718592041	0	lncRNA	2793-1_{1..3000}	"transcript_id ""ENST00000577700.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577700.1"" | genecode_v17"	chr7	 45022622	 45025621	-	ENSG00000232956.3	ENST00000577700.1	SNHG15	SNHG15-002	MYO1G	NA	chr7:45012622-45018704	inter
CUST_45164_PI429285431	0.90654814	A	0.9315232	A	0.982837588800919	0	lncRNA	49640-1_{1..3000}	"gi|310120193|ref|XR_110875.1| PREDICTED: Homo sapiens uncharacterized LOC100507403 (LOC100507403), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310120193|ref|XR_110875.1| PREDICTED: Homo sapiens uncharacterized LOC100507403 (LOC100507403), misc_RNA"	NA	NA	NA	NA	NA	XR_110875.1	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60"	NA	Unknown
CUST_29042_PI429285431	6.0494194	P	6.7097344	P	0.632740128560364	0	lncRNA	30771-1_{1..2986}	n326532|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027724|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027724|-1.2280600|-0.3733979	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326532|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027724|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027724|-1.2280600|-0.3733979	chr1	 91067691	 91070676	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30017_PI429285431	3.2708218	A	3.670842	P	0.757847672121373	0	lncRNA	31785-1_{1..380}	n334453|U13192|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218119|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218119|2.0441100|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334453|U13192|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218119|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218119|2.0441100|-1.0000000	chr15	 89346666	 89347045	+	NA	NA	NA	NA	ACAN	NA	chr15:89346674-89357046	inner
CUST_5286_PI429285431	0.909822	A	0.9175447	A	0.994661333870406	0	lncRNA	5226-1_{1..2663}	"transcript_id ""ENST00000569588.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000569588.1"" | genecode_v17"	chr15	 88795961	 88798623	+	ENSG00000260305.1	ENST00000569588.1	NTRK3-AS1	NTRK3-AS1-001	NTRK3	NA	chr15:88785961-88799661	inner
CUST_3688_PI429285431	11.752393	P	11.757248	P	0.99664042647698	0	lncRNA	3656-1_{1..486}	"transcript_id ""ENST00000319426.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000319426.3"" | genecode_v17"	chr10	 47151363	 47151848	-	ENSG00000223477.2	ENST00000319426.3	LINC00842	LINC00842-201	ANXA8L1	NA	chr10:47157989-47161848	inter
CUST_19226_PI429285431	1.0842913	A	1.3575653	A	0.827439651889653	0	lncRNA	20896-1_{1..626}	lnc-RD3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RD3-2:1	chr1	211306530	211307155	-	lnc-RD3-2	lnc-RD3-2:1	ENSG00000234233.1	KCNH1-IT1	KCNH1	NA	chr1:211296530-211307457	inner
CUST_27497_PI429285431	1.3317094	A	2.0463588	A	0.609353197276228	0	lncRNA	29071-1_{1..298}	n324677|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000315722|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000315722|-0.8967430|-0.1396105	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324677|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000315722|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000315722|-0.8967430|-0.1396105	chr22	 30696847	 30697144	+	NA	NA	NA	NA	TBC1D10A	NA	chr22:30687979-30709462	inner
CUST_29239_PI429285431	10.339845	P	10.36096	P	0.98547078003479	0	lncRNA	30990-1_{1..421}	n328167|BK005569|guide_RNA|Homosapiens|scaRNAmgU12-22/U4-8|GENEBANK|NULL|NULL|-1.2835900|-0.2606945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n328167|BK005569|guide_RNA|Homosapiens|scaRNAmgU12-22/U4-8|GENEBANK|NULL|NULL|-1.2835900|-0.2606945	chr18	 47340392	 47340812	+	NA	NA	NA	NA	MYO5B	NA	chr18:47349156-47350813	inter
CUST_24494_PI429285431	5.5998654	P	5.5866594	P	1.00919572491848	0	lncRNA	26046-1_{1..316}	lnc-STOML1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STOML1-2:2	chr15	 74164284	 74164599	-	lnc-STOML1-2	lnc-STOML1-2:2	ENSG00000260624.1	RP11-24D15.1	TBC1D21	NA	chr15:74165968-74174348	inter
CUST_10036_PI429285431	2.2832694	A	2.0751886	A	1.15515047843715	0	lncRNA	11563-1_{1..475}	lnc-GEMIN2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GEMIN2-2:1	chr14	 39434292	 39434766	+	lnc-GEMIN2-2	lnc-GEMIN2-2:1	XLOC_010810	linc-SIP1-1	NA	NA	NA	inter
CUST_16975_PI429285431	6.6114287	P	7.1004944	P	0.712486359870791	0	lncRNA	18685-1_{1..304}	lnc-SFT2D3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SFT2D3-1:1	chr2	128570086	128570389	+	lnc-SFT2D3-1	lnc-SFT2D3-1:1	XLOC_001664	linc-UGGT1	WDR33	NA	chr2:128560086-128568761	inter
CUST_47009_PI429285431	5.7026024	P	6.3129325	P	0.655046804907475	0	lncRNA	51105-1_{1..2674}	"gi|300796704|ref|NR_034133.1| Homo sapiens uncharacterized LOC400655 (LOC400655), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300796704|ref|NR_034133.1| Homo sapiens uncharacterized LOC400655 (LOC400655), non-coding RNA"	Chr18	 70821293	 70823966	-	400655	NR_034133.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20"	NA	inter
CUST_32622_PI429285431	2.0152109	A	1.2854394	A	1.65837641032094	0	lncRNA	34281-1_{1..2534}	n339245|AK123966|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1677|NULL|-0.9132660|-0.2927124	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339245|AK123966|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1677|NULL|-0.9132660|-0.2927124	chr3	  8918876	  8921409	-	NA	NA	NA	NA	RAD18	"hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0,hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40chr3:8918880-8931466"	NA	inner
LNCA_21_P0014405	0.9044969	A	0.8957165	A	1.0061046674982	0	lncRNA	ENST00000431019	XR_109624	XR_109624	NA	Hs.666466	LOC100506153	NA	ENST00000431019	THC2607049	NA	"PREDICTED: Homo sapiens hypothetical LOC100506153 (LOC100506153), miscRNA [XR_109624]"	chr20:49187571-49187512	hs|20q13.13	Agilent_HUMAN_G3V2	ENST00000431019	ENST00000431019	chr20	 49187512	 49187571	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23828_PI429285431	8.428101	P	8.337762	P	1.06462031423957	0	lncRNA	25391-1_{1..962}	lnc-PRDM13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRDM13-1:1	chr6	 99979508	 99980469	+	lnc-PRDM13-1	lnc-PRDM13-1:1	ENSG00000228439.2	RP1-199J3.3	LOC100130890	NA	chr6:99969508-99981061	inner
LNCA_21_P0012444	1.9383087	A	2.0771062	A	0.908275896472249	0	lncRNA	TCONS_l2_00019351	NA	NA	NA	NA	XLOC_l2_010239	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010239), lincRNA [TCONS_l2_00019351]"	chr3:72109993-72109934	hs|3p13	Agilent_HUMAN_G3V2	TCONS_l2_00019351	TCONS_l2_00019351	chr3	 72109934	 72109993	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49459_PI429285431	2.8889425	A	3.8195472	P	0.524638395582489	0	lncRNA	53258-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00024861 range=chr6:107164396-107235397 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024861 range=chr6:107164396-107235397 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	107167396	107170395	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30"	NA	inter
CUST_37613_PI429285431	0.9048099	A	0.9113282	A	0.995492050178636	0	lncRNA	38711-1_{1..605}	n346091|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1641|NULL|-1.2964600|-0.2091663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346091|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1641|NULL|-1.2964600|-0.2091663	chrX	 16480994	 16481598	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26358_PI429285431	2.6957467	A	2.1353774	A	1.47464664793036	0	lncRNA	27865-1_{1..1488}	lnc-ITGAL-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITGAL-3:2	chr16	 30593851	 30595338	+	lnc-ITGAL-3	lnc-ITGAL-3:2	ENSG00000239791.1	AC002310.7	ZNF785	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_REPIN1:range=chr7:150068331-1500700345'pad=0,hg19_refFlat_REPIN1:range=chr7:150068331-1500700345'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_REPIN1:range=chr7:150066801-1500700345'pad=0,hg19_refFlat_REPIN1:range=chr7:150066801-1500700345'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF785:range=chr16:30593881-305969325'pad=0,hg19_refFlat_ZNF785:range=chr16:30593881-305969325'pad=0 3'pad=0 strand=- repeatMasking=none,-104.60chr16:30591994-30597092"	NA	inner
LNCA_21_P0001934	2.1809874	A	2.3242826	A	0.90544869382323	0	lncRNA	ENST00000432133	NA	NA	NA	NA	XLOC_001744	NA	ENST00000432133	NA	NA	"BROAD Institute lincRNA (XLOC_001744), lincRNA [TCONS_00003045]"	chr2:169957355-169957414	hs|2q31.1	Agilent_HUMAN_G3V2	ENST00000432133	ENST00000432133	chr2	169957355	169957414	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51124_PI429285431	1.3834462	A	1.2860588	A	1.06983432681363	0	lncRNA	54757-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00007341 range=chr13:114053727-114065280 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007341 range=chr13:114053727-114065280 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	114053727	114056726	-	NA	NA	NA	NA	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-59.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-61.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70"	NA	inter
CUST_4874_PI429285431	0.89987737	A	0.90425855	A	0.996967803856272	0	lncRNA	4817-1_{1..1826}	"transcript_id ""ENST00000554898.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554898.1"" | genecode_v17"	chr14	 69649737	 69651562	-	ENSG00000258957.1	ENST00000554898.1	RP11-363J20.1	RP11-363J20.1-001	EXD2	NA	chr14:69658194-69690809	inter
CUST_50187_PI429285431	3.7969105	P	4.2820535	P	0.714426252397302	0	lncRNA	53912-1_{1..2683}	hg19_lincRNAsTranscripts_TCONS_l2_00028702 range=chr9:35446006-35482981 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028702 range=chr9:35446006-35482981 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 35446006	 35448688	+	NA	NA	NA	NA	RUSC2	NA	chr9:35449637-35492981	inter
CUST_32245_PI429285431	0.88852215	A	0.88566536	A	1.00198213777703	0	lncRNA	33937-1_{1..756}	n338820|BC031304|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1243|NULL|-0.9680360|-0.3379379	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n338820|BC031304|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1243|NULL|-0.9680360|-0.3379379	chr2	 46656333	 46657088	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6547_PI429285431	1.172966	A	2.1506958	A	0.507778142469325	0	lncRNA	6495-1_{1..437}	"transcript_id ""ENST00000600941.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600941.1"" | genecode_v17"	chr19	 48766157	 48766593	-	ENSG00000268186.1	ENST00000600941.1	CTC-241F20.4	CTC-241F20.4-001	CARD8	"hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0,hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30chr19:48756157-48759203"	NA	inter
CUST_42616_PI429285431	5.7401934	P	6.023493	P	0.821709527708836	0	lncRNA	45480-1_{1..70}	ENST00000362928 ncrna:snoRNA chromosome:GRCh37:14:101421707:101421776:1 gene:ENSG00000199798 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362928 ncrna:snoRNA chromosome:GRCh37:14:101421707:101421776:1 gene:ENSG00000199798 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101421707	101421776	+	ENSG00000199798	ENST00000362928	NA	NA	NA	NA	NA	inter
CUST_21299_PI429285431	5.728728	P	6.218534	P	0.712120850645032	0	lncRNA	22924-1_{1..827}	lnc-SIRT4-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SIRT4-1:4	chr12	120648733	120649559	+	lnc-SIRT4-1	lnc-SIRT4-1:4	ENSG00000255857.1	RP1-278C19.3	RPLP0	NA	chr12:120638733-120639014	inner
LNCA_21_P0002324	0.9072825	A	0.8977643	A	1.00661932502707	0	lncRNA	TCONS_00003955	NA	NA	NA	NA	XLOC_001773	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001773), lincRNA [TCONS_00003955]"	chr2:181589325-181589384	hs|2q31.3	Agilent_HUMAN_G3V2	TCONS_00003955	TCONS_00003955	chr2	181589325	181589384	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_624_PI429285431	1.077124	A	1.5878708	A	0.701859031886279	0	lncRNA	616-1_{1..684}	"transcript_id ""ENST00000590678.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590678.1"" | genecode_v17"	chr2	   305841	   306524	-	ENSG00000235779.2	ENST00000590678.1	AC079779.5	AC079779.5-011	NA	NA	NA	inter
CUST_46206_PI429285431	3.7943373	P	4.5272493	P	0.601688213027427	0	lncRNA	50448-1_{1..1078}	"gi|333609252|ref|NR_003365.2| Homo sapiens suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 3 (SUGT1P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333609252|ref|NR_003365.2| Homo sapiens suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 3 (SUGT1P3), non-coding RNA"	Chr13	 41486023	 41487100	-	283507	NR_003365.2	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00"	NA	inter
CUST_1783_PI429285431	0.8934273	A	1.9805851	A	0.470687746276385	0	lncRNA	1769-1_{1..267}	"transcript_id ""ENST00000503232.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503232.1"" | genecode_v17"	chr4	 59726676	 59726942	-	ENSG00000251339.1	ENST00000503232.1	RP11-506N2.1	RP11-506N2.1-003	NA	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20"	NA	inter
CUST_19400_PI429285431	3.4244392	P	3.4272602	P	0.998046542290594	0	lncRNA	21062-1_{1..697}	lnc-NLRC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NLRC4-1:1	chr2	 32604020	 32604716	-	lnc-NLRC4-1	lnc-NLRC4-1:1	ENSG00000230046.1	BIRC6-AS1	BIRC6	"hg19_refFlat_BIRC6:range=chr2:32582230-328429715'pad=0,hg19_refFlat_BIRC6:range=chr2:32582230-328429715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30chr2:32594020-32614667"	NA	inner
CUST_32035_PI429285431	4.129738	P	4.3419867	P	0.863190744004105	0	lncRNA	33753-3_{6001..9000}	n338599|D84239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1005|NULL|36.1234000|-0.1103645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338599|D84239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1005|NULL|36.1234000|-0.1103645	chr19	 40359970	 40362969	-	NA	NA	NA	NA	FCGBP	NA	chr19:40353963-40440533	inner
CUST_7553_PI429285431	2.1044142	A	2.3368726	A	0.851183210958269	0	lncRNA	9189-1_{1..654}	lnc-AMIGO2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AMIGO2-1:2	chr12	 47610167	 47610820	-	lnc-AMIGO2-1	lnc-AMIGO2-1:2	ENSG00000247774	RP11-493L12.2	FAM113B	NA	chr12:47610052-47620227	inner
CUST_4417_PI429285431	1.3860829	A	1.2854689	A	1.07222969822143	0	lncRNA	4367-1_{1..474}	"transcript_id ""ENST00000551761.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551761.1"" | genecode_v17"	chr12	114676775	114677248	-	ENSG00000257476.1	ENST00000551761.1	RP11-139B1.1	RP11-139B1.1-001	NA	NA	NA	inter
CUST_28509_PI429285431	0.903819	A	1.2805637	A	0.770173452437916	0	lncRNA	30178-1_{1..375}	n325854|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051005|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051005|-1.1371400|-0.2339797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325854|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051005|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051005|-1.1371400|-0.2339797	chr10	130647025	130647399	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39689_PI429285431	11.968173	P	11.800873	P	1.12295490970544	0	lncRNA	40629-1_{1..2036}	n405444|NR_002188|lncRNA|Homosapiens||RefGeneNoncode|NR_002188||4.7042000|-0.1717563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405444|NR_002188|lncRNA|Homosapiens||RefGeneNoncode|NR_002188||4.7042000|-0.1717563	chr1	155183615	155185650	-	NA	NA	NA	NA	GBA	NA	chr1:155204239-155207325	inter
CUST_32374_PI429285431	9.063696	P	7.640535	P	2.68172443804949	0	lncRNA	34050-2_{3001..5319}	n338963|BX647087|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1391|NULL|-0.9882850|-0.2618420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338963|BX647087|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1391|NULL|-0.9882850|-0.2618420	chr2	135209959	135212277	+	NA	NA	NA	NA	TMEM163	NA	chr2:135213330-135222192	inner
CUST_8075_PI429285431	6.7754993	P	6.1998363	P	1.49036221153228	0	lncRNA	9680-1_{1..780}	lnc-WDR74-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR74-1:1	chr11	 62623337	 62624116	-	lnc-WDR74-1	lnc-WDR74-1:1	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62633386	inter
CUST_34342_PI429285431	1.2461666	A	0.9167122	A	1.25653808569727	0	lncRNA	35834-1_{1..1506}	n341213|BC016712|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3681|NULL|0.4613770|-0.3473913	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341213|BC016712|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3681|NULL|0.4613770|-0.3473913	chr7	 27236498	 27238003	-	NA	NA	NA	NA	HOXA13	NA	chr7:27236499-27239725	inner
CUST_2371_PI429285431	5.567442	P	5.7185044	P	0.900587026469568	0	lncRNA	2364-1_{1..2141}	"transcript_id ""ENST00000508452.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000508452.1"" | genecode_v17"	chr5	134984273	134986413	-	ENSG00000251045.1	ENST00000508452.1	CTC-321K16.4	CTC-321K16.4-001	NA	NA	NA	inter
CUST_33146_PI429285431	3.6604745	P	3.6435354	P	1.01181048890995	0	lncRNA	34742-1_{1..1135}	n339835|BC035129|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2282|NULL|-1.0722200|-0.2846977	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339835|BC035129|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2282|NULL|-1.0722200|-0.2846977	chr4	  6987653	  6988787	-	NA	NA	NA	NA	TBC1D14	NA	chr4:6977653-6998772	inner
CUST_32187_PI429285431	4.1496177	P	4.7016015	P	0.682081576480006	0	lncRNA	33885-1_{1..1472}	n338759|AF126749|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1180|NULL|2.3571200|-0.1546015	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338759|AF126749|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1180|NULL|2.3571200|-0.1546015	chr13	 70681344	 70682815	+	NA	NA	NA	NA	KLHL1	"hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0,hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0 3'pad=0 strand=- repeatMasking=none,-105.40chr13:70671344-70682625"	NA	inner
CUST_35826_PI429285431	1.8511539	A	1.7555231	A	1.06853250812994	0	lncRNA	37229-1_{1..1761}	n344499|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_47|NULL|-1.1930400|-0.3234204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344499|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_47|NULL|-1.1930400|-0.3234204	chr3	154958733	154960493	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19581_PI429285431	16.584618	P	16.952866	P	0.774722744284363	0	lncRNA	21237-1_{1..656}	lnc-KRT81-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KRT81-1:1	chr12	 52709677	 52710332	-	lnc-KRT81-1	lnc-KRT81-1:1	ENSG00000257540.1	RP11-259K21.3	KRT83	NA	chr12:52708085-52715182	inner
CUST_1749_PI429285431	5.4327784	P	5.8195376	P	0.764845788577118	0	lncRNA	1735-1_{1..478}	"transcript_id ""ENST00000529094.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000529094.1"" | genecode_v17"	chr4	 39640760	 39641237	+	ENSG00000255458.1	ENST00000529094.1	RP11-539G18.2	RP11-539G18.2-004	C4orf34	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40chr4:39630760-39640481"	NA	inter
CUST_9127_PI429285431	0.91260713	A	0.9155422	A	0.997967632565963	0	lncRNA	10646-1_{1..724}	lnc-WRNIP1-2:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WRNIP1-2:17	chr6	  2367178	  2367901	+	lnc-WRNIP1-2	lnc-WRNIP1-2:17	ENSG00000250903	RP1-80B9.2	NA	NA	NA	inter
CUST_47797_PI429285431	0.90817064	A	0.906438	A	1.00120169598963	0	lncRNA	51718-1_{1..1962}	"gi|224589112|ref|NR_027278.1| Homo sapiens long intergenic non-protein coding RNA 281 (LINC00281), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|224589112|ref|NR_027278.1| Homo sapiens long intergenic non-protein coding RNA 281 (LINC00281), non-coding RNA"	NT_113923.1	    24049	    26010	+	26080	NR_027278.1	NA	NA	NA	NA	NA	Unknown
CUST_44544_PI429285431	9.790959	P	8.131675	P	3.15859726747867	0	lncRNA	49132-2_{3001..6000}	"gi|402478648|ref|NR_073103.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402478648|ref|NR_073103.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 2, non-coding RNA"	Chr5	 52288156	 52291155	+	3673	NR_073103.1	NA	NA	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.21;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00"	NA	inter
CUST_29350_PI429285431	0.89864975	A	0.8944973	A	1.00288240517434	0	lncRNA	31102-1_{1..1382}	n332606|AL049275|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000023714|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000023714|-1.2730700|-0.3438120	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n332606|AL049275|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000023714|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000023714|-1.2730700|-0.3438120	chr17	 34897564	 34898945	-	NA	NA	NA	NA	MYO19	"hg19_refFlat_GGNBP2:range=chr17:34901574-349458415'pad=0,hg19_refFlat_GGNBP2:range=chr17:34901574-349458415'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr17:34887564-34891305"	NA	inter
LNCA_21_P0001289	1.9936233	A	1.770456	A	1.16729345743222	0	lncRNA	ENST00000409706	NA	NA	NA	NA	FAM183A	"family with sequence similarity 183, member A"	ENST00000409706	NA	NA	"BROAD Institute lincRNA (XLOC_000162), lincRNA [TCONS_00000921]"	chr1:43610130-43610189	hs|1p34.2	Agilent_HUMAN_G3V2	ENST00000409706	ENST00000409706	chr1	 43610130	 43610189	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3138_PI429285431	3.1765325	P	3.2438638	P	0.954401820462467	0	lncRNA	3117-1_{1..859}	"transcript_id ""ENST00000525556.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000525556.1"" | genecode_v17"	chr8	 61878361	 61879219	-	ENSG00000254802.1	ENST00000525556.1	AC022182.3	AC022182.3-001	NA	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20"	NA	inter
CUST_40532_PI429285431	1.2382404	A	0.92884666	A	1.2391868502288	0	lncRNA	41292-5_{12001..15000}	n409638|NR_034022|lncRNA|Homosapiens||RefGeneNoncode|NR_034022||2.9666000|-0.3061889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n409638|NR_034022|lncRNA|Homosapiens||RefGeneNoncode|NR_034022||2.9666000|-0.3061889	chr7	  7127400	  7130399	-	NA	NA	NA	NA	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.61;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00"	NA	inter
CUST_42020_PI429285431	4.2793975	P	3.788381	P	1.40543477397179	0	lncRNA	43886-1_{1..67}	ENST00000582636 ncrna:miRNA chromosome:GRCh37:1:249120576:249120642:1 gene:ENSG00000264500 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582636 ncrna:miRNA chromosome:GRCh37:1:249120576:249120642:1 gene:ENSG00000264500 gene_biotype:miRNA transcript_biotype:miRNA	chr1	249120576	249120642	+	ENSG00000264500	ENST00000582636	NA	NA	SH3BP5L	NA	chr1:249110576-249120154	inter
CUST_11000_PI429285431	1.1555386	A	0.9027893	A	1.19147551150329	0	lncRNA	12545-1_{1..591}	lnc-RBMY1F-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RBMY1F-2:1	chrY	 24587492	 24588082	-	lnc-RBMY1F-2	lnc-RBMY1F-2:1	XLOC_008331	linc-RBMY1F-2	NA	NA	NA	inter
CUST_31069_PI429285431	6.7032647	P	6.9078016	P	0.867817208698788	0	lncRNA	32859-1_{1..390}	n337300|BC129831|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389993|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389993|-0.8980440|-0.0925628	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337300|BC129831|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389993|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389993|-0.8980440|-0.0925628	chr14	 60323028	 60323417	+	NA	NA	NA	NA	RTN1	NA	chr14:60313028-60333418	inner
CUST_6994_PI429285431	9.565283	P	9.989654	P	0.745163544286876	0	lncRNA	6942-1_{1..475}	"transcript_id ""ENST00000412060.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000412060.1"" | genecode_v17"	chr22	 42760408	 42760882	-	ENSG00000229891.1	ENST00000412060.1	Z83851.1	Z83851.1-002	NA	NA	NA	inter
CUST_25367_PI429285431	7.762665	P	7.798443	P	0.975505559480964	0	lncRNA	26897-1_{1..518}	lnc-LINC00273-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-LINC00273-1:1	chr16	 33956915	 33957432	-	lnc-LINC00273-1	lnc-LINC00273-1:1	ENSG00000260609.1	LINC00273	NA	NA	NA	inter
LNCA_21_P0014244	0.9246687	A	0.91172993	A	1.00900880918756	0	lncRNA	XR_109002	XR_109002	XR_109002	NA	Hs.158438	LOC100507059	uncharacterized LOC100507059	ENST00000434902	THC2674370	NA	"PREDICTED: Homo sapiens hypothetical LOC100507059 (LOC100507059), miscRNA [XR_109002]"	chr10:4450886-4450945	hs|10p15.1	Agilent_HUMAN_G3V2	XR_109002	XR_109002	chr10	  4450886	  4450945	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35117_PI429285431	2.808506	A	2.983519	P	0.885759537563961	0	lncRNA	36522-1_{1..612}	n342085|AF074983|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4567|NULL|-0.8021030|-0.3283707	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n342085|AF074983|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4567|NULL|-0.8021030|-0.3283707	chr6	 90550658	 90551269	+	NA	NA	NA	NA	CASP8AP2	NA	chr6:90540658-90561267	inner
LNCA_21_P0008092	1.2134364	A	2.2328753	A	0.493308174766146	0	lncRNA	TCONS_00021859	NA	NA	NA	NA	XLOC_010453	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010453), lincRNA [TCONS_00021859]"	chr13:80937654-80937713	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00021859	TCONS_00021859	chr13	 80937654	 80937713	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22491_PI429285431	0.9015671	A	0.8942143	A	1.0051095822074	0	lncRNA	24078-1_{1..301}	lnc-LINS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LINS-1:1	chr15	101099901	101100201	-	lnc-LINS-1	lnc-LINS-1:1	ENSG00000259406.1	RP11-526I2.3	LINS	NA	chr15:101109428-101110057	inter
CUST_22212_PI429285431	0.8989788	A	1.9660089	A	0.477300548696133	0	lncRNA	23812-1_{1..727}	lnc-DGCR6-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DGCR6-2:4	chr22	 18973215	 18973941	+	lnc-DGCR6-2	lnc-DGCR6-2:4	ENSG00000237517.3	DGCR5	NA	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.11;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-26.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70"	NA	inter
LNCA_21_P0014328	6.7635474	P	6.6715717	P	1.06582878365469	0	lncRNA	XR_109304	XR_109304	XR_109304	NA	Hs.662278	LOC100505722	uncharacterized LOC100505722	NA	THC2626274	NA	"PREDICTED: Homo sapiens hypothetical LOC100505722 (LOC100505722), miscRNA [XR_109304]"	chr16:56336710-56336769	hs|16q12.2	Agilent_HUMAN_G3V2	XR_109304	XR_109304	chr16	 56336710	 56336769	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8318_PI429285431	2.566803	A	2.4697773	A	1.06956614084114	0	lncRNA	9903-1_{1..2056}	lnc-ERLEC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ERLEC1-1:1	chr2	 54086976	 54089031	+	lnc-ERLEC1-1	lnc-ERLEC1-1:1	ENSG00000248111	ENST00000394721	PSME4	"hg19_refFlat_GPR75:range=chr2:54080271-540818935'pad=0,hg19_refFlat_GPR75:range=chr2:54080271-540818935'pad=0 3'pad=0 strand=- repeatMasking=none,-95.60;hg19_refFlat_GPR75-ASB3:range=chr2:53897640-540870655'pad=0,hg19_refFlat_GPR75-ASB3:range=chr2:53897640-540870655'pad=0 3'pad=0 strand=- repeatMasking=none,-101.70chr2:54091204-54097068"	NA	inner
LNCA_21_P0001594	2.7695575	A	2.1379123	A	1.5493307902794	0	lncRNA	TCONS_00001709	NA	NA	NA	NA	XLOC_001074	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001074), lincRNA [TCONS_00001709]"	chr1:164514056-164513997	hs|1q23.3	Agilent_HUMAN_G3V2	TCONS_00001709	TCONS_00001709	chr1	164513997	164514056	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36899_PI429285431	3.5442324	P	3.3766897	P	1.12314383673057	0	lncRNA	38059-1_{1..2555}	n345372|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_921|NULL|-1.3290500|-0.2525505	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345372|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_921|NULL|-1.3290500|-0.2525505	chr19	 15424346	 15426900	+	NA	NA	NA	NA	NA	"hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-26.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70"	NA	inter
CUST_22688_PI429285431	0.9107369	A	0.92726225	A	0.988610853255408	0	lncRNA	24271-1_{1..2547}	lnc-ACBD6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACBD6-1:1	chr1	180243786	180246332	-	lnc-ACBD6-1	lnc-ACBD6-1:1	ENSG00000230124.2	RP5-1180C10.2	LHX4	NA	chr1:180233786-180244188	inner
CUST_30622_PI429285431	0.90381706	A	2.367327	A	0.362609859963746	0	lncRNA	32404-1_{1..368}	n335961|X72448|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323290|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323290|2.1219300|-0.2152064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335961|X72448|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323290|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323290|2.1219300|-0.2152064	chr2	 89161026	 89161393	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46533_PI429285431	5.5935473	P	6.4697924	P	0.544783494772595	0	lncRNA	50722-1_{1..796}	"gi|310123359|ref|XR_110597.1| PREDICTED: Homo sapiens uncharacterized LOC100505616, transcript variant 2 (LOC100505616), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310123359|ref|XR_110597.1| PREDICTED: Homo sapiens uncharacterized LOC100505616, transcript variant 2 (LOC100505616), misc_RNA"	Chr15	 83419316	 83420111	+	100505616	XR_110597.2	NA	NA	NA	NA	NA	inter
CUST_6098_PI429285431	1.4424927	A	2.229299	A	0.579625792799277	0	lncRNA	6024-1_{1..555}	"transcript_id ""ENST00000584414.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584414.1"" | genecode_v17"	chr18	 14905442	 14905996	+	ENSG00000263618.1	ENST00000584414.1	RP11-527H14.4	RP11-527H14.4-001	NA	NA	NA	inter
CUST_2894_PI429285431	3.1014717	A	3.0839765	P	1.01220057569447	0	lncRNA	2875-1_{1..640}	"transcript_id ""ENST00000453666.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453666.1"" | genecode_v17"	chr7	104558007	104558646	-	ENSG00000225329.1	ENST00000453666.1	RP11-325F22.5	RP11-325F22.5-001	LHFPL3	NA	chr7:104548007-104549005	inter
CUST_42060_PI429285431	1.4749206	A	1.9935542	A	0.69803263829106	0	lncRNA	43969-1_{1..110}	ENST00000384891 ncrna:miRNA chromosome:GRCh37:1:209605478:209605587:1 gene:ENSG00000207623 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384891 ncrna:miRNA chromosome:GRCh37:1:209605478:209605587:1 gene:ENSG00000207623 gene_biotype:miRNA transcript_biotype:miRNA	chr1	209605478	209605587	+	ENSG00000207623	ENST00000384891	NA	NA	LOC642587	NA	chr1:209602168-209605894	inter
CUST_40834_PI429285431	8.312044	P	8.190174	P	1.08814438550532	0	lncRNA	41537-1_{1..2305}	n410604|NR_037853_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037853_8||7.1322100|-0.1679847	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410604|NR_037853_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037853_8||7.1322100|-0.1679847	chr6	 31497995	 31500299	-	NA	NA	NA	NA	DDX39B	NA	chr6:31497996-31510252	inter
CUST_25412_PI429285431	0.9209094	A	0.91234356	A	1.00595504906888	0	lncRNA	26942-1_{1..596}	lnc-KCNMB4-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNMB4-1:7	chr12	 70931830	 70932425	+	lnc-KCNMB4-1	lnc-KCNMB4-1:7	ENSG00000258168.1	RP11-588H23.3	PTPRB	"hg19_refFlat_PTPRB:range=chr12:70915269-710311755'pad=0,hg19_refFlat_PTPRB:range=chr12:70915269-710311755'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PTPRB:range=chr12:70915269-710035945'pad=0,hg19_refFlat_PTPRB:range=chr12:70915269-710035945'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10chr12:70921830-70941985"	NA	inner
CUST_4341_PI429285431	2.5370407	A	1.2290828	A	2.47590832991092	0	lncRNA	4296-1_{1..790}	"transcript_id ""ENST00000550938.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550938.1"" | genecode_v17"	chr12	 81672971	 81673760	+	ENSG00000257467.1	ENST00000550938.1	RP11-121G22.3	RP11-121G22.3-006	PPFIA2	NA	chr12:81662971-81702206	inner
CUST_43581_PI429285431	0.92646766	A	1.0837947	A	0.896684869949197	0	lncRNA	48351-1_{1..2538}	"gi|397138897|ref|XR_159111.1| PREDICTED: Homo sapiens uncharacterized LOC100509195 (LOC100509195), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397138897|ref|XR_159111.1| PREDICTED: Homo sapiens uncharacterized LOC100509195 (LOC100509195), misc_RNA"	Chr1	146139081	146141618	-	100509195	XR_159111.2	NA	NA	NA	NA	NA	inter
CUST_42457_PI429285431	8.144761	P	8.276426	P	0.912777414783072	0	lncRNA	45193-1_{1..75}	ENST00000383884 ncrna:snoRNA chromosome:GRCh37:9:136216251:136216325:1 gene:ENSG00000206611 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000383884 ncrna:snoRNA chromosome:GRCh37:9:136216251:136216325:1 gene:ENSG00000206611 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	136216251	136216325	+	ENSG00000206611	ENST00000383884	NA	NA	RPL7A	NA	chr9:136215069-136218280	inner
CUST_28795_PI429285431	0.913569	A	0.9125804	A	1.0006854801369	0	lncRNA	30503-1_{1..397}	n326202|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091396|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091396|-1.2120000|-0.3150903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326202|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091396|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091396|-1.2120000|-0.3150903	chr1	223701567	223701963	-	NA	NA	NA	NA	CAPN8	NA	chr1:223714972-223729668	inner
LNCA_21_P0004072	8.322402	P	8.587446	P	0.832173354305467	0	lncRNA	ENST00000507391	NA	NA	NA	NA	XLOC_004595	NA	ENST00000507391	NA	NA	"BROAD Institute lincRNA (XLOC_004595), lincRNA [TCONS_00009536]"	chr5:145780636-145786762	hs|5q32	Agilent_HUMAN_G3V2	ENST00000507391	ENST00000507391	chr5	145780636	145786762	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42902_PI429285431	0.91264176	A	0.9087466	A	1.00270356723602	0	lncRNA	45998-1_{1..72}	ENST00000459442 ncrna:snoRNA chromosome:GRCh37:3:99940365:99940436:-1 gene:ENSG00000238377 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459442 ncrna:snoRNA chromosome:GRCh37:3:99940365:99940436:-1 gene:ENSG00000238377 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	 99940365	 99940436	-	ENSG00000238377	ENST00000459442	NA	NA	NA	NA	NA	inter
CUST_23517_PI429285431	4.7001987	P	4.91234	P	0.863255005773981	0	lncRNA	25084-1_{1..593}	lnc-SESN3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SESN3-3:1	chr11	 94658590	 94659182	-	lnc-SESN3-3	lnc-SESN3-3:1	ENSG00000256469.1	RP11-856F16.2	NA	NA	NA	inter
LNCA_21_P0007225	9.925843	P	10.224453	P	0.813035358014724	0	lncRNA	TCONS_00019359	NA	NA	NA	NA	XLOC_009185	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009185), lincRNA [TCONS_00019359]"	chr11:68050282-68050341	hs|11q13.2	Agilent_HUMAN_G3V2	TCONS_00019359	TCONS_00019359	chr11	 68050282	 68050341	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43440_PI429285431	6.304652	P	6.651236	P	0.786444029977132	0	lncRNA	48248-1_{1..1947}	"gi|395132440|ref|NR_073023.1| Homo sapiens ST3 beta-galactoside alpha-2,3-sialyltransferase 3 (ST3GAL3), transcript variant 25, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|395132440|ref|NR_073023.1| Homo sapiens ST3 beta-galactoside alpha-2,3-sialyltransferase 3 (ST3GAL3), transcript variant 25, non-coding RNA"	Chr1	 44173204	 44175150	+	6487	NR_073023.1	NA	NA	NA	NA	NA	inter
CUST_40781_PI429285431	5.605649	P	5.763299	P	0.89648416160419	0	lncRNA	41496-1_{1..1213}	n410516|NR_037658|lncRNA|Homosapiens||RefGeneNoncode|NR_037658||5.1214900|-0.1743618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410516|NR_037658|lncRNA|Homosapiens||RefGeneNoncode|NR_037658||5.1214900|-0.1743618	chr12	 56109817	 56111029	+	NA	NA	NA	NA	ITGA7	NA	chr12:56099817-56106089	inner
CUST_44990_PI429285431	4.1972613	P	3.8469417	P	1.27484301180685	0	lncRNA	49499-1_{1..2712}	"gi|261598992|ref|NR_029411.1| Homo sapiens uncharacterized LOC100133091 (LOC100133091), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|261598992|ref|NR_029411.1| Homo sapiens uncharacterized LOC100133091 (LOC100133091), non-coding RNA"	Chr7	 76178658	 76181369	+	100133091	NR_029411.1	NA	NA	NA	"hg19_refFlat_POM121:range=chr7:72396951-724167735'pad=0,hg19_refFlat_POM121:range=chr7:72396951-724167735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_POM121:range=chr7:72396951-724190095'pad=0,hg19_refFlat_POM121:range=chr7:72396951-724190095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_POMZP3:range=chr7:76240782-762553815'pad=0,hg19_refFlat_POMZP3:range=chr7:76240782-762553815'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_POM121C:range=chr7:75048079-750707745'pad=0,hg19_refFlat_POM121C:range=chr7:75048079-750707745'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_POMZP3:range=chr7:76239530-762553815'pad=0,hg19_refFlat_POMZP3:range=chr7:76239530-762553815'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20"	NA	inter
CUST_45720_PI429285431	2.8428578	A	3.0249362	P	0.881432257162595	0	lncRNA	50085-3_{6001..9000}	"gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	Chr11	  2635558	  2638557	-	10984	NR_002728.3	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.02;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0,hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_13188_PI429285431	3.787906	P	4.613248	P	0.564348404180052	0	lncRNA	14815-1_{1..946}	lnc-TCF12-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF12-1:14	chr15	 57599740	 57600685	+	lnc-TCF12-1	lnc-TCF12-1:14	XLOC_011264	linc-CGNL1-2	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00"	NA	inter
LNCA_21_P0005726	0.9200466	A	0.9173205	A	1.00189137492634	0	lncRNA	TCONS_00014767	NA	NA	NA	NA	XLOC_006850	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006850), lincRNA [TCONS_00014767]"	chr8:77388231-77431037	hs|8q21.11	Agilent_HUMAN_G3V2	TCONS_00014767	TCONS_00014767	chr8	 77388231	 77431037	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46013_PI429285431	0.9098384	A	0.9165083	A	0.995387448262385	0	lncRNA	50297-1_{1..1294}	"gi|406362857|ref|NR_073170.1| Homo sapiens uncharacterized LOC101055625 (LOC101055625), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|406362857|ref|NR_073170.1| Homo sapiens uncharacterized LOC101055625 (LOC101055625), transcript variant 1, non-coding RNA"	Chr12	 29542227	 29543520	+	101055625	NR_073170.1	NA	NA	NA	NA	NA	inter
CUST_38476_PI429285431	1.5278014	A	0.90314794	A	1.54184042588303	0	lncRNA	39494-1_{1..1007}	n382971|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ecr.3||3.7220600|-0.1469644	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382971|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ecr.3||3.7220600|-0.1469644	chr16	 31819167	 31820173	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51495_PI429285431	1.2030131	A	1.1109133	A	1.06592046972649	0	lncRNA	55071-1_{1..373}	hg19_lincRNAsTranscripts_TCONS_l2_00009811 range=chr16:70236207-70237631 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009811 range=chr16:70236207-70237631 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 70236207	 70236579	+	NA	NA	NA	NA	NA	"hg19_refFlat_NPIPL3:range=chr16:21413605-214364195'pad=0,hg19_refFlat_NPIPL3:range=chr16:21413605-214364195'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100132247:range=chr16:22525123-225477065'pad=0,hg19_refFlat_LOC100132247:range=chr16:22525123-225477065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NPIP:range=chr16:15031300-150458825'pad=0,hg19_refFlat_NPIP:range=chr16:15031300-150458825'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50"	NA	inter
CUST_41750_PI429285431	3.7511537	P	4.0188265	P	0.830658394190162	0	lncRNA	43295-1_{1..60}	ENST00000578292 ncrna:miRNA chromosome:GRCh37:16:88782686:88782745:-1 gene:ENSG00000265672 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578292 ncrna:miRNA chromosome:GRCh37:16:88782686:88782745:-1 gene:ENSG00000265672 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 88782686	 88782745	-	ENSG00000265672	ENST00000578292	NA	NA	RNF166	NA	chr16:88772686-88772829	inner
CUST_48767_PI429285431	5.0399437	P	5.20953	P	0.889097597787033	0	lncRNA	52604-1_{1..711}	hg19_lincRNAsTranscripts_TCONS_l2_00014990 range=chr2:174745531-174764191 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014990 range=chr2:174745531-174764191 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	174745531	174746241	-	NA	NA	NA	NA	SP3	NA	chr2:174771187-174774191	inter
CUST_28395_PI429285431	9.578177	P	9.412249	P	1.12188748954652	0	lncRNA	30052-1_{1..403}	n325715|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045182|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045182|-0.7585250|-0.3388235	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325715|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045182|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045182|-0.7585250|-0.3388235	chr13	 60389176	 60389578	+	NA	NA	NA	NA	DIAPH3	NA	chr13:60379176-60400140	inner
CUST_49820_PI429285431	0.92297	A	0.93011713	A	0.995058237875154	0	lncRNA	53578-1_{1..956}	hg19_lincRNAsTranscripts_TCONS_l2_00025953 range=chr7:64543764-64549193 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025953 range=chr7:64543764-64549193 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 64543764	 64544719	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50"	NA	inter
CUST_40865_PI429285431	4.581154	P	4.6602917	P	0.946623275172395	0	lncRNA	41564-1_{1..1122}	n410661|NR_037907|lncRNA|Homosapiens||RefGeneNoncode|NR_037907||1.2385600|-0.0659094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410661|NR_037907|lncRNA|Homosapiens||RefGeneNoncode|NR_037907||1.2385600|-0.0659094	chr11	117690789	117691910	-	NA	NA	NA	NA	FXYD6-FXYD2	NA	chr11:117690790-117747746	inner
CUST_22059_PI429285431	0.89691675	A	0.89660156	A	1.00021849692682	0	lncRNA	23667-1_{1..1216}	lnc-MGST3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MGST3-2:1	chr1	165678602	165679817	+	lnc-MGST3-2	lnc-MGST3-2:1	ENSG00000215838.3	RP11-466F5.5	NA	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50"	NA	inter
LNCA_21_P0011848	8.519933	P	8.358652	P	1.11827964195416	0	lncRNA	XR_109888	XR_109888	XR_109888	NA	NA	LOC100506922	uncharacterized LOC100506922	NA	THC2664168	NA	"PREDICTED: Homo sapiens hypothetical LOC100506922 (LOC100506922), miscRNA [XR_109888]"	chr2:128146912-128146971	hs|2q14.3	Agilent_HUMAN_G3V2	XR_109888	XR_109888	chr2	128146912	128146971	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18486_PI429285431	2.3046138	A	2.210622	A	1.0673192715861	0	lncRNA	20204-1_{1..324}	lnc-ADAMTS19-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ADAMTS19-1:2	chr5	129100577	129100900	+	lnc-ADAMTS19-1	lnc-ADAMTS19-1:2	ENSG00000186367	KIAA1024L	NA	NA	NA	inner
CUST_40765_PI429285431	5.4871964	P	5.5854177	P	0.93418403815993	0	lncRNA	41487-2_{3001..4899}	n410481|NR_037625_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_6||-0.7541790|-0.2664380	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410481|NR_037625_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_6||-0.7541790|-0.2664380	chr6	  4398891	  4400789	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20425_PI429285431	2.5395145	A	2.8198352	A	0.823407959672323	0	lncRNA	22068-1_{1..677}	lnc-RPS18-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS18-2:3	chr6	 33222475	 33223151	+	lnc-RPS18-2	lnc-RPS18-2:3	ENSG00000232940.1	HCG25	VPS52	"hg19_refFlat_VPS52:range=chr6_cox_hap2:4662444-46832625'pad=0,hg19_refFlat_VPS52:range=chr6_cox_hap2:4662444-46832625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_VPS52:range=chr6:33218618-332394525'pad=0,hg19_refFlat_VPS52:range=chr6:33218618-332394525'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_VPS52:range=chr6_dbb_hap3:4499938-45207745'pad=0,hg19_refFlat_VPS52:range=chr6_dbb_hap3:4499938-45207745'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_VPS52:range=chr6_mcf_hap5:4692408-47132225'pad=0,hg19_refFlat_VPS52:range=chr6_mcf_hap5:4692408-47132225'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_VPS52:range=chr6_mann_hap4:4675922-46770555'pad=0,hg19_refFlat_VPS52:range=chr6_mann_hap4:4675922-46770555'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_VPS52:range=chr6_qbl_hap6:4450837-44716885'pad=0,hg19_refFlat_VPS52:range=chr6_qbl_hap6:4450837-44716885'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_VPS52:range=chr6_ssto_hap7:4698843-47196545'pad=0,hg19_refFlat_VPS52:range=chr6_ssto_hap7:4698843-47196545'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70chr6:33218049-33232766"	NA	inner
CUST_32192_PI429285431	1.1035545	A	0.8931549	A	1.15700860963858	0	lncRNA	33889-1_{1..322}	n338764|AF335593|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1185|NULL|-0.7744750|-0.1744731	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338764|AF335593|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1185|NULL|-0.7744750|-0.1744731	chr19	 48322702	 48323023	+	NA	NA	NA	NA	CRX	NA	chr19:48325099-48333024	inter
CUST_676_PI429285431	1.2379345	A	0.9108424	A	1.254482286678	0	lncRNA	669-1_{1..528}	"transcript_id ""ENST00000436082.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436082.1"" | genecode_v17"	chr2	  6636135	  6636662	+	ENSG00000226488.1	ENST00000436082.1	AC021021.2	AC021021.2-001	NA	"hg19_refFlat_PIK3CD:range=chr1:9770514-97871045'pad=0,hg19_refFlat_PIK3CD:range=chr1:9770514-97871045'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.10"	NA	inter
CUST_43068_PI429285431	9.183996	P	9.101606	P	1.05877057088885	0	lncRNA	47039-1_{1..89}	ENST00000516794 ncrna:snRNA chromosome:GRCh37:22:42118047:42118135:-1 gene:ENSG00000252603 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516794 ncrna:snRNA chromosome:GRCh37:22:42118047:42118135:-1 gene:ENSG00000252603 gene_biotype:snRNA transcript_biotype:snRNA	chr22	 42118047	 42118135	-	ENSG00000252603	ENST00000516794	NA	NA	MEI1	NA	chr22:42108047-42128135	inner
CUST_34909_PI429285431	2.7616825	A	0.90938866	A	3.61073824979159	0	lncRNA	36333-1_{1..3000}	n341827|AK124760|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4306|NULL|-1.2276700|-0.4367900	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341827|AK124760|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4306|NULL|-1.2276700|-0.4367900	chr12	 12268962	 12271961	-	NA	NA	NA	NA	LRP6	NA	chr12:12268959-12282807	inner
CUST_510_PI429285431	0.8899791	A	0.8883296	A	1.00114400014386	0	lncRNA	502-1_{1..642}	"transcript_id ""ENST00000436955.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436955.1"" | genecode_v17"	chr1	185576316	185576957	-	ENSG00000232279.1	ENST00000436955.1	GS1-204I12.1	GS1-204I12.1-001	NA	NA	NA	inter
CUST_9705_PI429285431	0.92773724	A	1.1929839	A	0.832056464455236	0	lncRNA	11221-1_{1..356}	lnc-AC004980.12.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC004980.12.1-1:1	chr7	 76264253	 76264608	+	lnc-AC004980.12.1-1	lnc-AC004980.12.1-1:1	XLOC_006150	linc-CCDC146-3	POMZP3	NA	chr7:76254253-76256620	inter
CUST_50485_PI429285431	5.8651505	P	5.56554	P	1.23081207282306	0	lncRNA	54181-3_{6001..7218}	hg19_lincRNAsTranscripts_TCONS_l2_00030285 range=chrX:100741010-100750790 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030285 range=chrX:100741010-100750790 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	100747010	100748227	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_33114_PI429285431	5.8020186	P	5.924531	P	0.918586572413781	0	lncRNA	34713-1_{1..2211}	n339802|BC042085|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2249|NULL|3.0886200|-0.2436248	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n339802|BC042085|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2249|NULL|3.0886200|-0.2436248	chr18	 13419497	 13421707	-	NA	NA	NA	NA	C18orf1	NA	chr18:13409497-13437518	inner
CUST_21196_PI429285431	0.90657306	A	0.90658987	A	0.999988348263777	0	lncRNA	22821-1_{1..1574}	lnc-ITGB3BP-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ITGB3BP-4:2	chr1	 64577629	 64579202	-	lnc-ITGB3BP-4	lnc-ITGB3BP-4:2	ENSG00000223949.1	RP11-24J23.2	ROR1	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr1:64567629-64587888"	NA	inner
CUST_32975_PI429285431	0.8884525	A	1.5250373	A	0.6432338343741	0	lncRNA	34591-1_{1..1836}	n339651|CR605930|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2095|NULL|-1.0205100|-0.3561868	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339651|CR605930|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2095|NULL|-1.0205100|-0.3561868	chr3	156252854	156254689	-	NA	NA	NA	NA	KCNAB1	"hg19_refFlat_KCNAB1:range=chr3:155838401-1562545365'pad=0,hg19_refFlat_KCNAB1:range=chr3:155838401-1562545365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_KCNAB1:range=chr3:156009697-1562545365'pad=0,hg19_refFlat_KCNAB1:range=chr3:156009697-1562545365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_KCNAB1:range=chr3:155860968-1562545365'pad=0,hg19_refFlat_KCNAB1:range=chr3:155860968-1562545365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40chr3:156242854-156256927"	NA	inner
CUST_31748_PI429285431	4.2950144	P	4.60487	P	0.806722500401756	0	lncRNA	33489-1_{1..942}	n338285|BC040706|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|678|NULL|-0.9239700|-0.1167270	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338285|BC040706|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|678|NULL|-0.9239700|-0.1167270	chr19	  7937138	  7938079	+	NA	NA	NA	NA	EVI5L	"hg19_refFlat_FLJ22184:range=chr19:7933919-79385745'pad=0,hg19_refFlat_FLJ22184:range=chr19:7933919-79385745'pad=0 3'pad=0 strand=- repeatMasking=none,-108.60chr19:7927138-7929862"	NA	inner
CUST_25890_PI429285431	1.3246665	A	1.0947022	A	1.17280592737455	0	lncRNA	27409-1_{1..196}	lnc-TFEB-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TFEB-1:3	chr6	 41513827	 41514022	-	lnc-TFEB-1	lnc-TFEB-1:3	ENSG00000234753.1	RP11-328M4.2	FOXP4	NA	chr6:41514164-41523981	inter
LNCA_21_P0011552	7.8257794	P	7.7035546	P	1.08841202426071	0	lncRNA	ENST00000455460	NA	NA	NA	NA	XLOC_l2_005880	NA	ENST00000455460	THC2685961	NA	"BROAD Institute lincRNA (XLOC_l2_005880), lincRNA [TCONS_l2_00010948]"	chr17:67957889-67957948	hs|17q24.3	Agilent_HUMAN_G3V2	ENST00000455460	ENST00000455460	chr17	 67957889	 67957948	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33520_PI429285431	1.6851456	A	1.9650918	A	0.823621730635026	0	lncRNA	35088-1_{1..655}	n340256|AF088025|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2717|NULL|-0.8770110|-0.1631029	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340256|AF088025|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2717|NULL|-0.8770110|-0.1631029	chr4	152328664	152329318	+	NA	NA	NA	NA	FAM160A1	NA	chr4:152330398-152339301	inter
CUST_31007_PI429285431	8.957571	P	9.204101	P	0.842921391012751	0	lncRNA	32795-1_{1..212}	n337205|AY766323|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386181|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386181|1.4119400|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337205|AY766323|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386181|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386181|1.4119400|-1.0000000	chr17	  7591667	  7591878	+	NA	NA	NA	NA	WRAP53	NA	chr17:7589389-7601879	inner
CUST_39586_PI429285431	0.9053067	A	0.89629495	A	1.00626601897724	0	lncRNA	40530-1_{1..2566}	n387588|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jdg.1||0.8816110|-0.2452443	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387588|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jdg.1||0.8816110|-0.2452443	chr6	  1040885	  1043450	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8809_PI429285431	6.904308	P	6.968201	P	0.956679109239452	0	lncRNA	10350-1_{1..1493}	lnc-NRGN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NRGN-1:1	chr11	124634625	124636117	+	lnc-NRGN-1	lnc-NRGN-1:1	ENSG00000250073	RP11-677M14.3	C11orf61	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80chr11:124636394-124645832"	NA	inter
CUST_9950_PI429285431	9.460474	P	9.069782	P	1.31102209510602	0	lncRNA	11473-1_{1..338}	lnc-ZNF492-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF492-1:3	chr19	 22719309	 22719646	+	lnc-ZNF492-1	lnc-ZNF492-1:3	XLOC_013014	linc-ZNF492-1	NA	NA	NA	inter
CUST_17264_PI429285431	0.90875196	A	0.9108689	A	0.998533725040682	0	lncRNA	18982-1_{1..421}	lnc-NTRK2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTRK2-2:2	chr9	 87198112	 87198532	+	lnc-NTRK2-2	lnc-NTRK2-2:2	XLOC_007429	linc-NTRK2-3	NA	NA	NA	inter
CUST_13664_PI429285431	5.918584	P	5.956793	P	0.973863176945967	0	lncRNA	15302-1_{1..983}	lnc-FAH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAH-1:1	chr15	 80489444	 80490426	+	lnc-FAH-1	lnc-FAH-1:1	XLOC_011327	linc-ARNT2	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40"	NA	inter
CUST_40594_PI429285431	0.8927109	A	0.8897821	A	1.00203215148917	0	lncRNA	41340-2_{3001..4639}	n410063|NR_036501|lncRNA|Homosapiens||RefGeneNoncode|NR_036501||-0.9968600|-0.2791908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410063|NR_036501|lncRNA|Homosapiens||RefGeneNoncode|NR_036501||-0.9968600|-0.2791908	chr7	 32800897	 32802535	+	NA	NA	NA	NA	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_DPY19L2:range=chr12:63954292-640621735'pad=0,hg19_refFlat_DPY19L2:range=chr12:63954292-640621735'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80"	NA	inter
CUST_19054_PI429285431	1.8573829	A	0.90429324	A	1.93601436864931	0	lncRNA	20745-1_{1..579}	lnc-RP11-181C3.1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-181C3.1.1-4:1	chr12	 98155448	 98156026	-	lnc-RP11-181C3.1.1-4	lnc-RP11-181C3.1.1-4:1	ENSG00000257501	RP11-1016B18.1	NA	NA	NA	inter
CUST_39752_PI429285431	0.90319246	A	0.90369105	A	0.999654463458751	0	lncRNA	40674-1_{1..1064}	n405890|NR_003129_6|lncRNA|Homosapiens||RefGeneNoncode|NR_003129_6||-1.1625700|-0.2127429	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405890|NR_003129_6|lncRNA|Homosapiens||RefGeneNoncode|NR_003129_6||-1.1625700|-0.2127429	chr6	  3526060	  3527123	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33580_PI429285431	2.69418	A	3.2682712	P	0.671709249402937	0	lncRNA	35145-1_{1..206}	n340332|AF009302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2793|NULL|-1.3820400|-0.2957171	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340332|AF009302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2793|NULL|-1.3820400|-0.2957171	chr5	  9196819	  9197024	+	NA	NA	NA	NA	SEMA5A	NA	chr5:9186819-9207025	inner
CUST_24561_PI429285431	9.514939	P	9.401102	P	1.08210237845618	0	lncRNA	26109-2_{3001..5356}	lnc-LMAN1L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LMAN1L-1:2	chr15	 75125471	 75127826	+	lnc-LMAN1L-1	lnc-LMAN1L-1:2	ENSG00000261606.1	RP11-414J4.2	CPLX3	NA	chr15:75118951-75124136	inner
CUST_33999_PI429285431	2.4299967	A	2.9311874	A	0.70652342526462	0	lncRNA	35536-1_{1..1086}	n340813|BX647864|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3276|NULL|-1.0615800|-0.3293459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340813|BX647864|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3276|NULL|-1.0615800|-0.3293459	chr17	 68047417	 68048502	+	NA	NA	NA	NA	KCNJ16	NA	chr17:68071426-68074236	inter
CUST_37934_PI429285431	3.8445299	P	3.789583	P	1.0388208676334	0	lncRNA	39023-1_{1..1768}	n346478|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2028|NULL|-1.5514000|-0.3159535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346478|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2028|NULL|-1.5514000|-0.3159535	chrX	 47415405	 47417172	-	NA	NA	NA	NA	ARAF	NA	chrX:47420516-47428281	inter
CUST_36020_PI429285431	0.9102215	A	0.90130866	A	1.0061970325613	0	lncRNA	37352-1_{1..1763}	n344632|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_180|NULL|-1.4169800|-0.2686706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344632|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_180|NULL|-1.4169800|-0.2686706	chr2	178151761	178153523	-	NA	NA	NA	NA	NA	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40"	NA	inter
CUST_33139_PI429285431	5.1984935	P	5.15742	P	1.02887912416116	0	lncRNA	34735-1_{1..1576}	n339828|AF070541|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2275|NULL|-1.0831300|-0.3128896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339828|AF070541|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2275|NULL|-1.0831300|-0.3128896	chr18	 31329599	 31331174	+	NA	NA	NA	NA	ASXL3	NA	chr18:31319599-31327399	inter
CUST_2044_PI429285431	0.9010996	A	0.9032767	A	0.998492087317723	0	lncRNA	2036-1_{1..768}	"transcript_id ""ENST00000508823.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508823.1"" | genecode_v17"	chr5	  3496343	  3497110	-	ENSG00000250716.1	ENST00000508823.1	RP11-121L11.2	RP11-121L11.2-001	NA	NA	NA	inter
CUST_26045_PI429285431	1.7372141	A	1.7442085	A	0.99516358466365	0	lncRNA	27560-1_{1..351}	lnc-AKAP13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AKAP13-1:1	chr15	 87489413	 87489763	+	lnc-AKAP13-1	lnc-AKAP13-1:1	ENSG00000259636.1	RP11-133L19.2	AGBL1	NA	chr15:87479413-87499562	inner
CUST_45273_PI429285431	2.7071292	A	1.0893973	A	3.06892183279603	0	lncRNA	49722-1_{1..2031}	"gi|354623048|ref|NR_045385.1| Homo sapiens uncharacterized LOC100507117 (LOC100507117), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|354623048|ref|NR_045385.1| Homo sapiens uncharacterized LOC100507117 (LOC100507117), non-coding RNA"	Chr8	131094984	131097014	-	100507117	NR_045385.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30"	NA	inter
CUST_9340_PI429285431	1.0534408	A	0.8956399	A	1.11558535467072	0	lncRNA	10846-1_{1..613}	lnc-KIAA1704-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1704-1:1	chr13	 45628418	 45629030	+	lnc-KIAA1704-1	lnc-KIAA1704-1:1	XLOC_010374	linc-GTF2F2-2	NA	NA	NA	inter
CUST_38754_PI429285431	1.0083332	A	1.477424	A	0.722419730048447	0	lncRNA	39745-1_{1..2621}	n384320|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003emc.1||-0.4449350|-0.2352226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384320|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003emc.1||-0.4449350|-0.2352226	chr3	129106816	129109436	-	NA	NA	NA	NA	NA	"hg19_refFlat_IFT122:range=chr3:129159174-1292391085'pad=0,hg19_refFlat_IFT122:range=chr3:129159174-1292391085'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90"	NA	inter
CUST_6354_PI429285431	0.9224734	A	0.9167566	A	1.00397044521743	0	lncRNA	6278-1_{1..425}	"transcript_id ""ENST00000588182.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000588182.1"" | genecode_v17"	chr19	 15962803	 15963227	-	ENSG00000267453.1	ENST00000588182.1	AC004791.2	AC004791.2-003	NA	NA	NA	inter
CUST_40972_PI429285431	0.8938339	A	0.88868517	A	1.00357520353099	0	lncRNA	41644-1_{1..3000}	n411065|NR_038889|lncRNA|Homosapiens||RefGeneNoncode|NR_038889||-0.9780090|-0.2809610	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n411065|NR_038889|lncRNA|Homosapiens||RefGeneNoncode|NR_038889||-0.9780090|-0.2809610	chr7	 30587972	 30590971	-	NA	NA	NA	NA	NA	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40"	NA	inter
CUST_47951_PI429285431	4.996387	P	3.3723125	A	3.08244360506234	0	lncRNA	51843-1_{1..3000}	"gi|410172547|ref|XR_171850.1| PREDICTED: Homo sapiens supervillin pseudogene (LOC645954), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172547|ref|XR_171850.1| PREDICTED: Homo sapiens supervillin pseudogene (LOC645954), misc_RNA"	NA	NA	NA	NA	NA	XR_171850.1	NA	NA	NA	NA	NA	Unknown
CUST_32352_PI429285431	0.9096977	A	1.3409712	A	0.741606862913305	0	lncRNA	34032-1_{1..3000}	n338935|BC035177|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1362|NULL|-0.8668450|-0.2019873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338935|BC035177|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1362|NULL|-0.8668450|-0.2019873	chr2	106726630	106729629	+	NA	NA	NA	NA	UXS1	"hg19_refFlat_UXS1:range=chr2:106710482-1068106975'pad=0,hg19_refFlat_UXS1:range=chr2:106710482-1068106975'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30;hg19_refFlat_UXS1:range=chr2:106710482-1067461875'pad=0,hg19_refFlat_UXS1:range=chr2:106710482-1067461875'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30chr2:106716630-106740096"	NA	inter
CUST_35039_PI429285431	1.0730804	A	0.8902109	A	1.1351394176633	0	lncRNA	36450-1_{1..286}	n341981|AY665172|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4462|NULL|-1.2085300|-0.2347373	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341981|AY665172|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4462|NULL|-1.2085300|-0.2347373	chr12	 89937979	 89938264	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46857_PI429285431	2.2931182	A	3.2183738	A	0.526587215087951	0	lncRNA	50988-1_{1..2477}	"gi|223941769|ref|NR_026905.1| Homo sapiens CRHR1 intronic transcript 1 (non-protein coding) (CRHR1-IT1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223941769|ref|NR_026905.1| Homo sapiens CRHR1 intronic transcript 1 (non-protein coding) (CRHR1-IT1), transcript variant 1, non-coding RNA"	Chr17	 43716341	 43718817	+	147081	NR_026905.1	NA	NA	NA	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00"	NA	inter
CUST_12684_PI429285431	1.6810898	A	1.4022875	A	1.21318729949586	0	lncRNA	14302-1_{1..407}	lnc-WDR26-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR26-3:1	chr1	225072362	225072768	-	lnc-WDR26-3	lnc-WDR26-3:1	XLOC_001229	linc-WDR26-1	NA	NA	NA	inter
LNCA_21_P0005892	3.8584867	P	3.4148524	P	1.3600260639653	0	lncRNA	TCONS_00015147	NA	NA	NA	NA	XLOC_007190	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007190), lincRNA [TCONS_00015147]"	chr8:118724689-118724630	hs|8q24.11	Agilent_HUMAN_G3V2	TCONS_00015147	TCONS_00015147	chr8	118724630	118724689	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28345_PI429285431	1.5516151	A	1.9881841	A	0.738889739497219	0	lncRNA	29991-1_{1..1844}	n325651|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045470|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045470|-1.0339000|-0.3168913	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325651|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045470|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045470|-1.0339000|-0.3168913	chr13	 94149948	 94151791	-	NA	NA	NA	NA	GPC6	NA	chr13:94139948-94163117	inner
CUST_42345_PI429285431	8.505221	P	8.545854	P	0.972228276831774	0	lncRNA	45004-1_{1..137}	ENST00000384744 ncrna:snoRNA chromosome:GRCh37:1:155889700:155889836:-1 gene:ENSG00000207475 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384744 ncrna:snoRNA chromosome:GRCh37:1:155889700:155889836:-1 gene:ENSG00000207475 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	155889700	155889836	-	ENSG00000207475	ENST00000384744	NA	NA	RIT1	NA	chr1:155879700-155881177	inner
CUST_37341_PI429285431	0.9165205	A	0.98105514	A	0.95625371989331	0	lncRNA	38446-1_{1..295}	n345785|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1334|NULL|-1.6348200|-0.2540389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345785|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1334|NULL|-1.6348200|-0.2540389	chr3	145880656	145880950	+	NA	NA	NA	NA	PLOD2	NA	chr3:145870656-145879282	inter
CUST_34904_PI429285431	0.91921085	A	0.9182871	A	1.00064049974046	0	lncRNA	36328-1_{1..1243}	n341822|BC042825|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4301|NULL|-0.1367840|-0.2341073	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341822|BC042825|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4301|NULL|-0.1367840|-0.2341073	chr6	 36125844	 36127086	-	NA	NA	NA	NA	BRPF3	NA	chr6:36164550-36174980	inner
CUST_38828_PI429285431	16.341011	P	16.043322	P	1.2291738671902	0	lncRNA	39822-1_{1..708}	n384624|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jhx.2||4.3933300|-0.1538171	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384624|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jhx.2||4.3933300|-0.1538171	chr5	 33162265	 33162972	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_970_PI429285431	2.5926049	A	1.3924164	A	2.29769690342385	0	lncRNA	959-1_{1..1424}	"transcript_id ""ENST00000419865.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419865.2"" | genecode_v17"	chr2	 99378401	 99379824	-	ENSG00000226791.3	ENST00000419865.2	AC109826.1	AC109826.1-001	NA	NA	NA	inter
CUST_44850_PI429285431	5.4933057	P	5.5863214	P	0.937560893478861	0	lncRNA	49376-1_{1..2107}	"gi|224589136|ref|NR_027284.1| Homo sapiens long intergenic non-protein coding RNA 602 (LINC00602), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224589136|ref|NR_027284.1| Homo sapiens long intergenic non-protein coding RNA 602 (LINC00602), non-coding RNA"	Chr6	166401039	166403145	+	441177	NR_027284.1	NA	NA	NA	NA	NA	inter
CUST_41357_PI429285431	9.635482	P	9.378813	P	1.19471706742225	0	lncRNA	42429-1_{1..90}	ENST00000579346 ncrna:miRNA chromosome:GRCh37:HSCHR6_MHC_QBL:30848250:30848339:1 gene:ENSG00000265336 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579346 ncrna:miRNA chromosome:GRCh37:HSCHR6_MHC_QBL:30848250:30848339:1 gene:ENSG00000265336 gene_biotype:miRNA transcript_biotype:miRNA	chrHSCHR6_MHC_QBL	 30848250	 30848339	+	ENSG00000265336	ENST00000579346	NA	NA	NA	NA	NA	Unknown
CUST_8832_PI429285431	5.392989	P	5.4495173	P	0.961575271268439	0	lncRNA	10373-1_{1..1350}	lnc-AC012652.1.1-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC012652.1.1-1:14	chr15	 41600918	 41602267	+	lnc-AC012652.1.1-1	lnc-AC012652.1.1-1:14	ENSG00000247556	AC012652.1	OIP5	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90chr15:41601466-41611901"	NA	inner
CUST_3824_PI429285431	0.90208334	A	0.905629	A	0.997545353351939	0	lncRNA	3792-1_{1..3000}	"transcript_id ""ENST00000415305.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000415305.2"" | genecode_v17"	chr10	127371812	127374811	+	ENSG00000228021.2	ENST00000415305.2	RP11-383C5.3	RP11-383C5.3-001	C10orf137	NA	chr10:127408084-127408627	inter
CUST_11349_PI429285431	0.8990871	A	0.8983108	A	1.00053823495275	0	lncRNA	12912-1_{1..761}	lnc-CSTF3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CSTF3-1:1	chr11	 33036823	 33037583	-	lnc-CSTF3-1	lnc-CSTF3-1:1	XLOC_009409	linc-CCDC73	DEPDC7	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr11:33037410-33047285"	NA	inter
LNCA_21_P0004543	2.972881	A	1.8010676	A	2.25294703913126	0	lncRNA	TCONS_00010852	NA	NA	NA	NA	XLOC_004669	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004669), lincRNA [TCONS_00010852]"	chr5:177388693-177388752	hs|5q35.3	Agilent_HUMAN_G3V2	TCONS_00010852	TCONS_00010852	chr5	177388693	177388752	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19968_PI429285431	1.7873228	A	2.3005953	A	0.70063137496106	0	lncRNA	21622-1_{1..576}	lnc-RGS5-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RGS5-1:9	chr1	163291412	163291987	-	lnc-RGS5-1	lnc-RGS5-1:9	ENSG00000232995.2	RP11-267N12.3	NUF2	NA	chr1:163291723-163301541	inner
CUST_50365_PI429285431	1.0443921	A	2.6295998	A	0.33327668508448	0	lncRNA	54079-1_{1..668}	hg19_lincRNAsTranscripts_TCONS_l2_00030215 range=chrX:55306542-55315398 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030215 range=chrX:55306542-55315398 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 55306542	 55307209	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24616_PI429285431	1.348331	A	0.93002653	A	1.33635607658903	0	lncRNA	26165-1_{1..591}	lnc-ZNF275-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF275-1:1	chrX	152625157	152625747	+	lnc-ZNF275-1	lnc-ZNF275-1:1	ENSG00000243768.1	LL0XNC01-37G1.1	ZNF275	NA	chrX:152615157-152618384	inter
CUST_10050_PI429285431	6.096031	P	6.3007607	P	0.867701242417837	0	lncRNA	11575-1_{1..869}	lnc-C20orf197-3:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf197-3:12	chr20	 58899470	 58900338	+	lnc-C20orf197-3	lnc-C20orf197-3:12	XLOC_013591	linc-CDH4-4	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20"	NA	inter
CUST_7904_PI429285431	4.6824284	P	5.094729	P	0.751424155951467	0	lncRNA	9518-2_{3001..4440}	lnc-AC015804.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC015804.1-2:1	chr17	 75535322	 75536761	-	lnc-AC015804.1-2	lnc-AC015804.1-2:1	ENSG00000250179	ENST00000543179	NA	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	inter
CUST_15658_PI429285431	1.958146	A	0.99034727	A	1.95585406718167	0	lncRNA	17351-1_{1..3000}	lnc-SNURF-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNURF-1:7	chr15	 25265737	 25268736	+	lnc-SNURF-1	lnc-SNURF-1:7	XLOC_011183	linc-GABRA5-7	SNRPN	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40chr15:25255737-25291705"	NA	inter
CUST_35753_PI429285431	0.91093653	A	0.91506535	A	0.997142211332519	0	lncRNA	37173-1_{1..1166}	n342932|AL049307|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5441|NULL|-1.1073800|-0.1217812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342932|AL049307|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5441|NULL|-1.1073800|-0.1217812	chr6	167764292	167765457	+	NA	NA	NA	NA	TTLL2	NA	chr6:167754292-167756177	inter
CUST_37681_PI429285431	0.9151901	A	0.910952	A	1.00294194612054	0	lncRNA	38774-1_{1..3000}	n346169|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1719|NULL|-1.5531600|-0.2781273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346169|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1719|NULL|-1.5531600|-0.2781273	chr20	 12734865	 12737864	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28217_PI429285431	1.0740564	A	1.5833515	A	0.702565627198448	0	lncRNA	29848-1_{1..510}	n325502|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322387|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322387|-1.2948200|-0.3386348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325502|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322387|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322387|-1.2948200|-0.3386348	chr2	   480943	   481452	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51143_PI429285431	0.8921021	A	0.927886	A	0.975501570092445	0	lncRNA	54768-3_{6001..6184}	hg19_lincRNAsTranscripts_TCONS_l2_00007750 range=chr14:60385849-60531120 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007750 range=chr14:60385849-60531120 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 60391849	 60392032	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21989_PI429285431	0.911178	A	0.9076593	A	1.00244195370816	0	lncRNA	23597-1_{1..528}	lnc-TTC30B-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTC30B-1:5	chr2	178179524	178180051	-	lnc-TTC30B-1	lnc-TTC30B-1:5	ENSG00000213963.2	AC074286.1	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50"	NA	inter
CUST_9344_PI429285431	1.1552823	A	1.6036937	A	0.732849368919605	0	lncRNA	10850-1_{1..447}	lnc-AC011298.2.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC011298.2.1-1:3	chr2	241626409	241626855	+	lnc-AC011298.2.1-1	lnc-AC011298.2.1-1:3	XLOC_001920	linc-AQP12A	AQP12B	NA	chr2:241616409-241622317	inter
CUST_225_PI429201921	0.9068545	A	0.91159284	A	0.996721020621863	0	lncRNA	176-1_{1..3000}	TC02003863.hg.1	TCONS_l2_00015611-XLOC_l2_007785 // Broad TUCP // linc-MRPL44-2 chr2:+:224363490-224369329 // chr2 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr2:+:224363490-224369329	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00015611-XLOC_l2_007785	linc-MRPL44-2	chr2	224363490	224369329	+	NA	NA	NA	NA	RCAN3	NA	chr1:24855292-24862428	Unknown
CUST_47421_PI429285431	1.6652535	A	0.90714586	A	1.69127075637199	0	lncRNA	51460-1_{1..3000}	"gi|223972655|ref|NR_026943.1| Homo sapiens uncharacterized LOC642852 (LOC642852), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223972655|ref|NR_026943.1| Homo sapiens uncharacterized LOC642852 (LOC642852), non-coding RNA"	Chr21	 46707967	 46710966	+	642852	NR_026943.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0013442	0.91631556	A	0.91119707	A	1.00355416804169	0	lncRNA	ENST00000446187	NA	NA	NA	NA	XLOC_l2_013883	NA	ENST00000446187	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013883), lincRNA [TCONS_l2_00027410]"	chr7:67649778-67620114	hs|7q11.22	Agilent_HUMAN_G3V2	ENST00000446187	ENST00000446187	chr7	 67620114	 67649778	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27814_PI429285431	1.0484296	A	0.9270304	A	1.08778934526386	0	lncRNA	29400-1_{1..449}	n325042|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078277|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078277|-0.4007090|-0.3895278	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325042|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078277|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078277|-0.4007090|-0.3895278	chr20	 21458839	 21459287	+	NA	NA	NA	NA	NKX2-2	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-62.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-60.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80chr20:21468853-21469382"	NA	inter
CUST_23097_PI429285431	0.90398675	A	0.9044928	A	0.999649294380875	0	lncRNA	24668-2_{3001..3457}	lnc-LEMD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-LEMD3-1:1	chr12	 65680450	 65680906	+	lnc-LEMD3-1	lnc-LEMD3-1:1	ENSG00000250280.2	RP11-305O6.3	MSRB3	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80chr12:65672423-65690508"	NA	inner
CUST_4992_PI429285431	9.410354	P	9.629784	P	0.858904717417869	0	lncRNA	4936-1_{1..1627}	"transcript_id ""ENST00000360899.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000360899.2"" | genecode_v17"	chr14	101123605	101125231	+	ENSG00000196273.3	ENST00000360899.2	LINC00523	LINC00523-002	NA	NA	NA	inter
CUST_11522_PI429285431	0.88637334	A	0.88640827	A	0.999975788662082	0	lncRNA	13092-1_{1..372}	lnc-SLC17A6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC17A6-1:1	chr11	 22513326	 22513697	+	lnc-SLC17A6-1	lnc-SLC17A6-1:1	XLOC_009088	linc-GAS2-2	NA	NA	NA	inter
CUST_47461_PI429285431	10.135869	P	9.914237	P	1.16605189747541	0	lncRNA	51488-2_{3001..3451}	"gi|373432687|ref|NR_046082.1| Homo sapiens ubiquitin-conjugating enzyme E2L 3 (UBE2L3), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|373432687|ref|NR_046082.1| Homo sapiens ubiquitin-conjugating enzyme E2L 3 (UBE2L3), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NR_046082.1	NA	NA	NA	NA	NA	Unknown
CUST_30262_PI429285431	0.90126985	A	0.90608525	A	0.996667783265098	0	lncRNA	32037-1_{1..376}	n335140|AY243321|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251173|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251173|0.2890020|-0.4480625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335140|AY243321|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251173|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251173|0.2890020|-0.4480625	chr18	 55888863	 55889238	+	NA	NA	NA	NA	NEDD4L	NA	chr18:55878863-55929306	inner
CUST_22851_PI429285431	1.2691412	A	1.1564362	A	1.08125364784205	0	lncRNA	24429-1_{1..732}	lnc-ROPN1L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ROPN1L-2:1	chr5	 10595758	 10596489	+	lnc-ROPN1L-2	lnc-ROPN1L-2:1	ENSG00000250841.1	ANKRD33B-IT1	ANKRD33B	NA	chr5:10585758-10606322	inner
CUST_42701_PI429285431	5.230333	P	5.083598	P	1.1070612163715	0	lncRNA	45627-1_{1..177}	ENST00000458922 ncrna:snoRNA chromosome:GRCh37:21:33036619:33036795:1 gene:ENSG00000238390 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000458922 ncrna:snoRNA chromosome:GRCh37:21:33036619:33036795:1 gene:ENSG00000238390 gene_biotype:snoRNA transcript_biotype:snoRNA	chr21	 33036619	 33036795	+	ENSG00000238390	ENST00000458922	NA	NA	SCAF4	NA	chr21:33043313-33046795	inner
CUST_28978_PI429285431	0.8980797	A	1.0781269	A	0.882674117769064	0	lncRNA	30699-1_{1..442}	n326459|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000034531|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000034531|-1.2509400|-0.4521239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326459|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000034531|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000034531|-1.2509400|-0.4521239	chr1	119672321	119672762	+	NA	NA	NA	NA	WARS2	NA	chr1:119662321-119683295	inner
CUST_1701_PI429285431	0.88558906	A	0.8833126	A	1.00157916740436	0	lncRNA	1685-1_{1..2228}	"transcript_id ""ENST00000510907.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510907.1"" | genecode_v17"	chr4	 13656803	 13659030	+	ENSG00000250634.1	ENST00000510907.1	RP11-341G5.1	RP11-341G5.1-002	NA	NA	NA	inter
CUST_34224_PI429285431	0.8882097	A	2.3207173	A	0.370486377030408	0	lncRNA	35734-4_{9001..10156}	n341083|AF525782|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3549|NULL|-0.8545410|-0.3661285	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341083|AF525782|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3549|NULL|-0.8545410|-0.3661285	chr11	 84603423	 84604578	+	NA	NA	NA	NA	DLG2	NA	chr11:84584423-84614599	inner
LNCA_21_P0004985	0.9063915	A	0.89837205	A	1.00557413716866	0	lncRNA	TCONS_00012038	NA	NA	NA	NA	XLOC_005573	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005573), lincRNA [TCONS_00012038]"	chr6:1131258-1131199	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_00012038	TCONS_00012038	chr6	  1131199	  1131258	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6405_PI429285431	3.3906915	P	3.5880914	P	0.872120929448845	0	lncRNA	6341-1_{1..485}	"transcript_id ""ENST00000596763.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596763.1"" | genecode_v17"	chr19	 23587554	 23588038	-	ENSG00000269416.1	ENST00000596763.1	CTB-175P5.4	CTB-175P5.4-006	ZNF91	NA	chr19:23577554-23578269	inter
CUST_2808_PI429285431	1.9073325	A	1.5908909	A	1.2452553419853	0	lncRNA	2792-1_{1..561}	"transcript_id ""ENST00000433315.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433315.1"" | genecode_v17"	chr7	 42869271	 42869831	-	ENSG00000231539.1	ENST00000433315.1	AC010132.10	AC010132.10-001	NA	NA	NA	inter
CUST_46864_PI429285431	7.0330114	P	6.0621715	P	1.95998131387572	0	lncRNA	50994-1_{1..526}	"gi|397139652|ref|XR_109394.2| PREDICTED: Homo sapiens uncharacterized LOC100506295, transcript variant 1 (LOC100506295), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139652|ref|XR_109394.2| PREDICTED: Homo sapiens uncharacterized LOC100506295, transcript variant 1 (LOC100506295), misc_RNA"	NA	NA	NA	NA	NA	XR_109394.2	NA	NA	NA	NA	NA	Unknown
CUST_7620_PI429285431	0.9046607	A	0.90969425	A	0.996517088465914	0	lncRNA	9253-1_{1..3000}	lnc-FAM78A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM78A-1:1	chr9	134069287	134072286	-	lnc-FAM78A-1	lnc-FAM78A-1:1	ENSG00000246851	ENSG00000246851.1	NUP214	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NUP214:range=chr9:134001092-1341088745'pad=0,hg19_refFlat_NUP214:range=chr9:134001092-1341088745'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr9:134059287-134079592"	NA	inner
CUST_48359_PI429285431	0.88929	A	0.88607913	A	1.00222808398592	0	lncRNA	52215-1_{1..466}	hg19_lincRNAsTranscripts_TCONS_l2_00000361 range=chr1:83912548-83928345 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000361 range=chr1:83912548-83928345 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 83912548	 83913013	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26337_PI429285431	0.9608955	A	1.4644872	A	0.705348574103431	0	lncRNA	27844-1_{1..769}	lnc-MRAP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRAP-1:1	chr21	 33652904	 33653672	+	lnc-MRAP-1	lnc-MRAP-1:1	ENSG00000227256.1	MIS18A-AS1	MIS18A	NA	chr21:33642904-33651376	inter
CUST_46872_PI429285431	0.8949819	A	2.1934013	A	0.406571389171942	0	lncRNA	51002-1_{1..3000}	"gi|373838808|ref|NR_046055.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 31, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373838808|ref|NR_046055.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 31, non-coding RNA"	Chr17	 48638429	 48641428	+	8913	NR_046055.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002363	2.451961	A	3.4110923	P	0.514366539202144	0	lncRNA	TCONS_00004039	NA	NA	NA	NA	XLOC_001878	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001878), lincRNA [TCONS_00004039]"	chr2:222688231-222688435	hs|2q36.1	Agilent_HUMAN_G3V2	TCONS_00004039	TCONS_00004039	chr2	222688231	222688435	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4330_PI429285431	0.9147428	A	0.8968213	A	1.01249971366286	0	lncRNA	4285-1_{1..1155}	"transcript_id ""ENST00000550268.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550268.1"" | genecode_v17"	chr12	 79786697	 79787851	-	ENSG00000257894.1	ENST00000550268.1	RP1-78O14.1	RP1-78O14.1-003	SYT1	NA	chr12:79776697-79845788	inner
CUST_6247_PI429285431	1.4391992	A	2.0437076	A	0.657695452408284	0	lncRNA	6172-1_{1..384}	"transcript_id ""ENST00000578633.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578633.1"" | genecode_v17"	chr18	 68003165	 68003548	-	ENSG00000266304.1	ENST00000578633.1	RP11-484N16.1	RP11-484N16.1-001	SOCS6	NA	chr18:67993165-67997434	inter
CUST_29349_PI429285431	11.113863	P	11.654082	P	0.687666513897464	0	lncRNA	31101-1_{1..782}	n332603|AK026458|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000009732|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000009732|-0.9579650|-0.1119928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332603|AK026458|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000009732|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000009732|-0.9579650|-0.1119928	chr19	 36245426	 36246207	-	NA	NA	NA	NA	C19orf55	NA	chr19:36249044-36256208	inner
CUST_24838_PI429285431	1.992846	A	2.0253205	A	0.977741842892047	0	lncRNA	26378-1_{1..401}	lnc-TBCD-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBCD-2:4	chr17	 80939335	 80939735	+	lnc-TBCD-2	lnc-TBCD-2:4	ENSG00000262339.1	RP11-1197K16.2	B3GNTL1	NA	chr17:80929335-80949614	inner
CUST_25878_PI429285431	4.886582	P	5.026722	P	0.907431093381888	0	lncRNA	27398-2_{3001..3474}	lnc-MST4.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MST4.1-1:2	chrX	131566841	131567314	+	lnc-MST4.1-1	lnc-MST4.1-1:2	ENSG00000232160.1	RP5-842K24.2	MBNL3	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chrX:131553841-131576890"	NA	inner
CUST_425_PI429285431	0.9005845	A	0.99076414	A	0.939405769980984	0	lncRNA	417-1_{1..814}	"transcript_id ""ENST00000433081.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433081.1"" | genecode_v17"	chr1	145376125	145376938	-	ENSG00000233396.1	ENST00000433081.1	RP11-458D21.1	RP11-458D21.1-001	NBPF10	NA	chr1:145366125-145368684	inter
LNCA_21_P0005314	2.1645896	A	0.96219575	A	2.30121192264731	0	lncRNA	XR_108828	XR_108828	XR_108828	NA	Hs.362492	LOC100507468	uncharacterized LOC100507468	ENST00000436600	THC2721295	NA	"PREDICTED: Homo sapiens hypothetical LOC100507468 (LOC100507468), miscRNA [XR_108828]"	chr7:69061192-69061133	hs|7q11.22	Agilent_HUMAN_G3V2	XR_108828	XR_108828	chr7	 69061133	 69061192	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24875_PI429285431	1.558577	A	2.08089	A	0.696254667968655	0	lncRNA	26416-1_{1..1173}	lnc-GSDMD-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GSDMD-2:1	chr8	144658831	144660003	+	lnc-GSDMD-2	lnc-GSDMD-2:1	ENSG00000255050.1	RP11-661A12.9	C8orf73	"hg19_refFlat_NAPRT1:range=chr8:144657008-1446604885'pad=0,hg19_refFlat_NAPRT1:range=chr8:144657008-1446604885'pad=0 3'pad=0 strand=- repeatMasking=none,-104.00chr8:144648831-144654928"	NA	inner
LNCA_21_P0005065	2.0126672	A	3.1413655	P	0.457328172363385	0	lncRNA	TCONS_00012301	NA	NA	NA	NA	XLOC_005858	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005858), lincRNA [TCONS_00012301]"	chr6:140299367-140299308	hs|6q24.1	Agilent_HUMAN_G3V2	TCONS_00012301	TCONS_00012301	chr6	140299308	140299367	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30722_PI429285431	0.8888917	A	0.88543886	A	1.00239619260254	0	lncRNA	32504-1_{1..489}	n336268|Y10208|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325569|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325569|-1.2288000|-0.4710125	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336268|Y10208|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325569|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325569|-1.2288000|-0.4710125	chr6	 25439996	 25440484	+	NA	NA	NA	NA	LRRC16A	NA	chr6:25429996-25450485	inner
CUST_38708_PI429285431	2.7382183	A	1.6492262	A	2.12725369720525	0	lncRNA	39703-1_{1..3000}	n384140|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003akv.1||-0.3261600|-0.3463077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384140|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003akv.1||-0.3261600|-0.3463077	chr22	 31831222	 31834221	+	NA	NA	NA	NA	EIF4ENIF1	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70chr22:31835345-31844552"	NA	inter
CUST_29432_PI429285431	1.0561197	A	0.9026219	A	1.11226287613469	0	lncRNA	31188-1_{1..445}	n332817|AF059253|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064829_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064829_05|-0.1989930|-0.2173656	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332817|AF059253|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064829_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064829_05|-0.1989930|-0.2173656	chr6	  3448890	  3449334	-	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.84;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr6:3438890-3456793"	NA	inner
CUST_39427_PI429285431	3.2521174	A	3.186909	A	1.04623605963531	0	lncRNA	40381-7_{18001..21000}	n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	chr13	 19426542	 19429541	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_51923_PI429285431	1.0797507	A	1.3229177	A	0.844888578185126	0	lncRNA	55463-1_{1..390}	hg19_lincRNAsTranscripts_TCONS_l2_00016420 range=chr20:1385807-1404511 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016420 range=chr20:1385807-1404511 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	  1385807	  1386196	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45981_PI429285431	2.0096252	A	0.92455864	A	2.1214733565111	0	lncRNA	50271-1_{1..2023}	"gi|380422403|ref|NR_046448.1| Homo sapiens C-type lectin domain family 2, member D pseudogene (LOC374443), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|380422403|ref|NR_046448.1| Homo sapiens C-type lectin domain family 2, member D pseudogene (LOC374443), transcript variant 6, non-coding RNA"	Chr12	  9786015	  9788037	+	374443	NR_046448.1	NA	NA	NA	NA	NA	inter
CUST_1004_PI429285431	0.9245378	A	0.92671	A	0.998495478623161	0	lncRNA	993-1_{1..511}	"transcript_id ""ENST00000451464.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451464.1"" | genecode_v17"	chr2	107159470	107159980	+	ENSG00000232001.1	ENST00000451464.1	AC108868.6	AC108868.6-001	NA	NA	NA	inter
CUST_2234_PI429285431	0.92257476	A	0.92573357	A	0.997812875005559	0	lncRNA	2226-1_{1..652}	"transcript_id ""ENST00000504287.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504287.1"" | genecode_v17"	chr5	 86957859	 86958510	+	ENSG00000249362.1	ENST00000504287.1	CTD-2316B1.1	CTD-2316B1.1-001	NA	NA	NA	inter
CUST_30415_PI429285431	2.4247	A	2.9294105	A	0.704801793215172	0	lncRNA	32195-1_{1..680}	n335549|BX248023|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000266978|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000266978|-0.8224870|-0.0703970	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335549|BX248023|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000266978|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000266978|-0.8224870|-0.0703970	chr14	 74058575	 74059254	-	NA	NA	NA	NA	ACOT4	"hg19_refFlat_ACOT4:range=chr14:74058664-740623585'pad=0,hg19_refFlat_ACOT4:range=chr14:74058664-740623585'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.00;hg19_refFlat_ACOT2:range=chr14:74035945-740422175'pad=0,hg19_refFlat_ACOT2:range=chr14:74035945-740422175'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.40chr14:74058410-74062470"	NA	inner
CUST_44821_PI429285431	2.2011526	A	1.5332075	A	1.5888083388785	0	lncRNA	49354-2_{3001..5005}	"gi|84872052|ref|NR_002768.1| Homo sapiens hydatidiform mole associated and imprinted (non-protein coding) (HYMAI), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|84872052|ref|NR_002768.1| Homo sapiens hydatidiform mole associated and imprinted (non-protein coding) (HYMAI), non-coding RNA"	Chr6	144327023	144329027	-	57061	NR_002768.1	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50"	NA	inter
CUST_35895_PI429285431	1.2260208	A	1.398832	A	0.887112390572763	0	lncRNA	37277-3_{6001..9000}	n344552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_100|NULL|-1.2931500|-0.3004446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n344552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_100|NULL|-1.2931500|-0.3004446	chr15	 25247369	 25250368	+	NA	NA	NA	NA	SNRPN	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr15:25231369-25375009"	NA	inter
CUST_51214_PI429285431	2.5870628	A	2.7896879	A	0.868967966592216	0	lncRNA	54832-1_{1..466}	hg19_lincRNAsTranscripts_TCONS_l2_00008908 range=chr15:20456666-20462694 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008908 range=chr15:20456666-20462694 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 20456666	 20457131	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21257_PI429285431	0.92072666	A	0.92151237	A	0.999455535603324	0	lncRNA	22882-1_{1..610}	lnc-TOX3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TOX3-1:1	chr16	 52685864	 52686473	-	lnc-TOX3-1	lnc-TOX3-1:1	ENSG00000249231.3	RP11-297L17.1	NA	NA	NA	inter
CUST_41297_PI429285431	10.209684	P	10.018613	P	1.14161088835449	0	lncRNA	42294-1_{1..83}	ENST00000408391 ncrna:miRNA chromosome:GRCh37:15:32737916:32737998:-1 gene:ENSG00000221318 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408391 ncrna:miRNA chromosome:GRCh37:15:32737916:32737998:-1 gene:ENSG00000221318 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 32737916	 32737998	-	ENSG00000221318	ENST00000408391	NA	NA	LOC728047	NA	chr15:32727916-32747835	inter
LNCA_21_P0006708	0.91912556	A	0.9084669	A	1.00741537888243	0	lncRNA	ENST00000413810	NA	NA	NA	NA	XLOC_008636	NA	ENST00000413810	THC2703232	NA	"BROAD Institute lincRNA (XLOC_008636), lincRNA [TCONS_00017873]"	chr10:120001424-120001483	hs|10q26.11	Agilent_HUMAN_G3V2	ENST00000413810	ENST00000413810	chr10	120001424	120001483	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36174_PI429285431	7.41621	P	8.149847	P	0.60138592158519	0	lncRNA	37445-1_{1..3000}	n344733|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_282|NULL|-1.3380300|-0.2313179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344733|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_282|NULL|-1.3380300|-0.2313179	chr8	128823491	128826490	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10"	NA	inter
CUST_19419_PI429285431	2.0646229	A	2.0324159	A	1.02257524067959	0	lncRNA	21080-1_{1..588}	lnc-STOML1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STOML1-1:6	chr15	 74220118	 74220705	-	lnc-STOML1-1	lnc-STOML1-1:6	ENSG00000261801.1	RP11-941F15.1	LOXL1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_LOXL1:range=chr15:74219125-742441785'pad=0,hg19_refFlat_LOXL1:range=chr15:74219125-742441785'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10chr15:74218789-74230281"	NA	inner
CUST_26134_PI429285431	1.912206	A	3.101586	A	0.438491262341147	0	lncRNA	27645-1_{1..499}	lnc-NTRK3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NTRK3-3:1	chr15	 87531568	 87532066	-	lnc-NTRK3-3	lnc-NTRK3-3:1	ENSG00000259620.1	RP11-133L19.1	AGBL1	NA	chr15:87521568-87541657	inner
CUST_19608_PI429285431	2.3828282	A	1.9359366	A	1.36310018396571	0	lncRNA	21264-1_{1..475}	lnc-C17orf75-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C17orf75-4:1	chr17	 30856650	 30857124	-	lnc-C17orf75-4	lnc-C17orf75-4:1	ENSG00000265337.1	RP11-466A19.5	MYO1D	NA	chr17:30846650-30867067	inner
CUST_38334_PI429285431	1.5223229	A	0.8994145	A	1.53997656874187	0	lncRNA	39380-1_{1..780}	n382050|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vep.1||-0.8218750|-0.3182638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382050|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vep.1||-0.8218750|-0.3182638	chr13	 50903769	 50904548	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4046_PI429285431	3.8510056	P	3.180444	P	1.59169244736655	0	lncRNA	4008-1_{1..488}	"transcript_id ""ENST00000531454.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531454.1"" | genecode_v17"	chr11	 87794942	 87795429	-	ENSG00000255102.1	ENST00000531454.1	RP11-164N3.2	RP11-164N3.2-001	NA	NA	NA	inter
CUST_15619_PI429285431	0.9141311	A	0.9077763	A	1.00441452714575	0	lncRNA	17307-1_{1..662}	lnc-XPC-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-XPC-4:1	chr3	 14432471	 14433132	-	lnc-XPC-4	lnc-XPC-4:1	XLOC_003055	linc-XPC-2	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-17.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-61.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30"	NA	inter
CUST_18196_PI429285431	14.816768	P	15.351799	P	0.690143847029874	0	lncRNA	19931-1_{1..738}	lnc-RP11-181C3.1.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-181C3.1.1-2:3	chr12	 98909769	 98910506	-	lnc-RP11-181C3.1.1-2	lnc-RP11-181C3.1.1-2:3	ENSG00000257167	RP11-181C3.2	TMPO	"hg19_refFlat_TMPO:range=chr12:98909646-989281205'pad=0,hg19_refFlat_TMPO:range=chr12:98909646-989281205'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.20;hg19_refFlat_TMPO:range=chr12:98909646-989416365'pad=0,hg19_refFlat_TMPO:range=chr12:98909646-989416365'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.20chr12:98909351-98919988"	NA	inner
CUST_31998_PI429285431	1.0590743	A	0.9053635	A	1.11242710313738	0	lncRNA	33720-1_{1..2096}	n338558|AL049973|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|963|NULL|-0.6652150|-0.3149353	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338558|AL049973|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|963|NULL|-0.6652150|-0.3149353	chr1	232000351	232002446	+	NA	NA	NA	NA	DISC1	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr1:231990351-232012422"	NA	inter
CUST_19409_PI429285431	0.9033439	A	0.8951037	A	1.00572801409221	0	lncRNA	21071-1_{1..550}	lnc-KCNMB4-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNMB4-1:8	chr12	 70931807	 70932356	+	lnc-KCNMB4-1	lnc-KCNMB4-1:8	ENSG00000258168.1	RP11-588H23.3	PTPRB	"hg19_refFlat_PTPRB:range=chr12:70915269-710311755'pad=0,hg19_refFlat_PTPRB:range=chr12:70915269-710311755'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PTPRB:range=chr12:70915269-710035945'pad=0,hg19_refFlat_PTPRB:range=chr12:70915269-710035945'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10chr12:70921807-70942279"	NA	inner
LNCA_21_P0014194	5.8550324	P	6.174368	P	0.801438876847072	0	lncRNA	XR_108790	XR_108790	XR_108790	NA	NA	LOC100507673	uncharacterized LOC100507673	NA	THC2586088	NA	"PREDICTED: Homo sapiens hypothetical LOC100507673 (LOC100507673), miscRNA [XR_108790]"	chr7:151104083-151104024	hs|7q36.1	Agilent_HUMAN_G3V2	XR_108790	XR_108790	chr7	151104024	151104083	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48530_PI429285431	3.0561118	A	0.90805566	A	4.43230186351946	0	lncRNA	52380-1_{1..1145}	hg19_lincRNAsTranscripts_TCONS_l2_00015860 range=chr2:91874128-91900136 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015860 range=chr2:91874128-91900136 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 91874128	 91875272	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20117_PI429285431	3.1725736	A	3.5618563	P	0.763509122640864	0	lncRNA	21765-1_{1..320}	lnc-WBSCR22-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WBSCR22-2:1	chr7	 73151988	 73152307	+	lnc-WBSCR22-2	lnc-WBSCR22-2:1	ENSG00000214738.2	ABHD11-AS2	ABHD11	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ABHD11:range=chr7:73150889-731531275'pad=0,hg19_refFlat_ABHD11:range=chr7:73150889-731531275'pad=0 3'pad=0 strand=- repeatMasking=none,-97.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50chr7:73150424-73153190"	NA	inner
CUST_22128_PI429285431	5.409074	P	5.0774	P	1.25847276933952	0	lncRNA	23731-1_{1..577}	lnc-C11orf44-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf44-2:1	chr11	131854377	131854953	+	lnc-C11orf44-2	lnc-C11orf44-2:1	ENSG00000224700.1	NTM-IT2	NTM	NA	chr11:131844377-131864555	inner
CUST_23775_PI429285431	0.9081926	A	0.9153137	A	0.995076191495888	0	lncRNA	25338-1_{1..526}	lnc-C9orf9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-C9orf9-1:1	chr9	135826596	135827121	+	lnc-C9orf9-1	lnc-C9orf9-1:1	ENSG00000233800.2	RP11-295G24.4	TSC1	NA	chr9:135816596-135820020	inter
CUST_8680_PI429285431	0.92460704	A	0.9157959	A	1.00612610514517	0	lncRNA	10228-1_{1..1412}	lnc-TMEM75-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TMEM75-3:1	chr8	128493879	128495290	-	lnc-TMEM75-3	lnc-TMEM75-3:1	ENSG00000246228	RP11-382A18.1	NA	NA	NA	inter
CUST_10987_PI429285431	0.90374273	A	0.90642864	A	0.998140001002343	0	lncRNA	12531-1_{1..735}	lnc-HDAC2-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HDAC2-2:11	chr6	113944942	113945676	-	lnc-HDAC2-2	lnc-HDAC2-2:11	XLOC_005810	linc-LAMA4-2	NA	NA	NA	inter
CUST_1315_PI429285431	0.8982517	A	1.1130255	A	0.861681252031839	0	lncRNA	1304-1_{1..2041}	"transcript_id ""ENST00000455626.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455626.1"" | genecode_v17"	chr3	 20383960	 20386000	+	ENSG00000231304.1	ENST00000455626.1	AC107622.1	AC107622.1-001	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40"	NA	inter
CUST_47738_PI429285431	1.740295	A	1.0481981	A	1.61563006692238	0	lncRNA	51688-2_{3001..5717}	"gi|385137082|ref|NR_047620.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 50, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137082|ref|NR_047620.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 50, non-coding RNA"	ChrY	 15363259	 15365975	-	7404	NR_047620.1	NA	NA	NA	NA	NA	inter
CUST_37449_PI429285431	8.941904	P	8.243699	P	1.62248484203776	0	lncRNA	38548-1_{1..241}	n345898|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1447|NULL|-1.3116400|-0.2568581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345898|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1447|NULL|-1.3116400|-0.2568581	chr9	 69067874	 69068114	+	NA	NA	NA	NA	LOC100507370	NA	chr9:69065490-69089939	inter
CUST_33134_PI429285431	0.9151443	A	0.92827773	A	0.990937910519617	0	lncRNA	34730-1_{1..868}	n339823|D82070|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2270|NULL|3.1011100|-0.2303497	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339823|D82070|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2270|NULL|3.1011100|-0.2303497	chr4	  5526882	  5527749	+	NA	NA	NA	NA	C4orf6	NA	chr4:5526883-5529528	inner
CUST_10229_PI429285431	3.9658582	P	4.0429554	P	0.947963095000672	0	lncRNA	11753-1_{1..1106}	lnc-AL669831.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL669831.1-4:1	chr1	   756930	   758035	+	lnc-AL669831.1-4	lnc-AL669831.1-4:1	XLOC_000008	linc-SAMD11-4	NA	NA	NA	inter
CUST_45917_PI429285431	3.738569	P	3.4824123	P	1.1942928995425	0	lncRNA	50227-1_{1..865}	"gi|365733601|ref|NR_045681.1| Homo sapiens olfactory receptor, family 8, subfamily G, member 1 (OR8G1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|365733601|ref|NR_045681.1| Homo sapiens olfactory receptor, family 8, subfamily G, member 1 (OR8G1), non-coding RNA"	Chr11	124120423	124121287	+	26494	NR_045681.1	NA	NA	NA	NA	NA	inter
CUST_31646_PI429285431	1.6286811	A	1.6846998	A	0.961914986384013	0	lncRNA	33397-1_{1..2395}	n338168|AK093043|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|557|NULL|0.0078104|-0.2059364	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338168|AK093043|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|557|NULL|0.0078104|-0.2059364	chr15	100516685	100519079	+	NA	NA	NA	NA	ADAMTS17	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70chr15:100511643-100530979"	NA	inner
CUST_37334_PI429285431	4.3585267	P	3.8577714	P	1.41495414519211	0	lncRNA	38439-1_{1..3000}	n345777|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1326|NULL|-1.3663800|-0.2559466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345777|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1326|NULL|-1.3663800|-0.2559466	chr7	 29685154	 29688153	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21838_PI429285431	0.9014457	A	0.90594554	A	0.996885807778544	0	lncRNA	23448-1_{1..439}	lnc-CALHM3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALHM3-1:2	chr10	105275098	105275536	-	lnc-CALHM3-1	lnc-CALHM3-1:2	ENSG00000235470.1	RP11-225H22.5	NEURL	NA	chr10:105265098-105285159	inner
CUST_24168_PI429285431	2.4662952	A	0.8988342	A	2.96382650838644	0	lncRNA	25719-1_{1..373}	lnc-PRPF18-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRPF18-4:1	chr10	 13753922	 13754294	+	lnc-PRPF18-4	lnc-PRPF18-4:1	ENSG00000225112.1	RP11-295P9.6	FRMD4A	NA	chr10:13743922-13764054	inner
CUST_5479_PI429285431	6.257337	P	6.4984493	P	0.846092733816082	0	lncRNA	5413-1_{1..371}	"transcript_id ""ENST00000602838.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602838.1"" | genecode_v17"	chr16	 28465462	 28465832	-	ENSG00000270118.1	ENST00000602838.1	RP11-57A19.5	RP11-57A19.5-001	NA	"hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10"	NA	inter
CUST_18170_PI429285431	1.4923193	A	1.3187234	A	1.12786617701717	0	lncRNA	19905-1_{1..524}	lnc-METAP1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-METAP1-3:3	chr4	100202339	100202862	+	lnc-METAP1-3	lnc-METAP1-3:3	ENSG00000246090	RP11-696N14.1	ADH1A	"hg19_refFlat_ACOT11:range=chr1:55013983-551004025'pad=0,hg19_refFlat_ACOT11:range=chr1:55013983-551004025'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50chr4:100197523-100212185"	NA	inter
CUST_8739_PI429285431	3.6678402	P	4.026863	P	0.779692520443828	0	lncRNA	10282-1_{1..388}	lnc-RASA1-7:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASA1-7:6	chr5	 88261658	 88262045	+	lnc-RASA1-7	lnc-RASA1-7:6	ENSG00000248309	CTC-454M9.1	NA	NA	NA	inter
CUST_1074_PI429285431	0.92927426	A	0.9181994	A	1.00770604791096	0	lncRNA	1063-1_{1..575}	"transcript_id ""ENST00000421696.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421696.2"" | genecode_v17"	chr2	132715850	132716424	+	ENSG00000244337.2	ENST00000421696.2	AJ239322.3	AJ239322.3-001	NA	NA	NA	inter
CUST_28847_PI429285431	0.9057674	A	0.90875584	A	0.997930715167695	0	lncRNA	30555-1_{1..595}	n326262|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088026|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088026|-1.3303800|-0.6718244	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326262|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088026|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088026|-1.3303800|-0.6718244	chr1	207212421	207213015	+	NA	NA	NA	NA	C1orf116	NA	chr1:207202421-207206101	inter
CUST_4671_PI429285431	6.294752	P	6.4603252	P	0.891574215937553	0	lncRNA	4617-1_{1..666}	"transcript_id ""ENST00000425048.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425048.1"" | genecode_v17"	chr13	 90129862	 90130527	-	ENSG00000226037.1	ENST00000425048.1	RP11-114G1.2	RP11-114G1.2-001	NA	NA	NA	inter
CUST_30430_PI429285431	5.261006	P	7.76131	P	0.176739449411489	0	lncRNA	32210-1_{1..1029}	n335565|CR541793|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000268664|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000268664|3.8394100|-0.0815626	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335565|CR541793|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000268664|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000268664|3.8394100|-0.0815626	chr17	 21188233	 21189261	+	NA	NA	NA	NA	MAP2K3	NA	chr17:21187968-21218552	inner
CUST_26689_PI429285431	0.9036498	A	1.0559083	A	0.899840683202573	0	lncRNA	28198-1_{1..341}	n678|AF040099|FMR1PbindingRNA|Homosapiens|FMR1PbindingRNA|NONCODEv2.0|n678|NULL|-1.3344400|-0.2282678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n678|AF040099|FMR1PbindingRNA|Homosapiens|FMR1PbindingRNA|NONCODEv2.0|n678|NULL|-1.3344400|-0.2282678	NA	NA	      340	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008159	0.91834354	A	0.91448843	A	1.0026757320253	0	lncRNA	TCONS_00021994	NA	NA	NA	NA	XLOC_010597	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010597), lincRNA [TCONS_00021994]"	chr13:46852650-46852591	hs|13q14.13	Agilent_HUMAN_G3V2	TCONS_00021994	TCONS_00021994	chr13	 46852591	 46852650	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13693_PI429285431	0.9038383	A	0.90982926	A	0.995855993158864	0	lncRNA	15333-1_{1..733}	lnc-RUVBL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RUVBL1-1:1	chr3	127763684	127764416	-	lnc-RUVBL1-1	lnc-RUVBL1-1:1	XLOC_003243	linc-MGLL	SEC61A1	NA	chr3:127771212-127773759	inter
CUST_41847_PI429285431	1.1208512	A	1.7488316	A	0.647081618228576	0	lncRNA	43492-1_{1..107}	ENST00000390148 ncrna:miRNA chromosome:GRCh37:4:403598:403704:1 gene:ENSG00000211482 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390148 ncrna:miRNA chromosome:GRCh37:4:403598:403704:1 gene:ENSG00000211482 gene_biotype:miRNA transcript_biotype:miRNA	chr4	   403598	   403704	+	ENSG00000211482	ENST00000390148	NA	NA	NA	NA	NA	inter
CUST_29676_PI429285431	1.0385973	A	0.8947967	A	1.10481177429184	0	lncRNA	31438-1_{1..523}	n333322|AY228454|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085399|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085399|-1.3357000|-0.3162540	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333322|AY228454|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085399|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085399|-1.3357000|-0.3162540	chr3	113890831	113891353	-	NA	NA	NA	NA	DRD3	NA	chr3:113880831-113897899	inner
CUST_2638_PI429285431	0.9202688	A	0.9165588	A	1.00257488537767	0	lncRNA	2625-1_{1..1202}	"transcript_id ""ENST00000438618.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438618.2"" | genecode_v17"	chr6	135819107	135820308	+	ENSG00000231028.4	ENST00000438618.2	LINC00271	LINC00271-006	AHI1	NA	chr6:135809107-135818903	inter
LNCA_21_P0006964	0.91434467	A	0.9085292	A	1.00403911194786	0	lncRNA	TCONS_00018426	NA	NA	NA	NA	XLOC_008721	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008721), lincRNA [TCONS_00018426]"	chr10:6962463-6962404	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018426	TCONS_00018426	chr10	  6962404	  6962463	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6118_PI429285431	1.5067027	A	1.7875438	M	0.82311099862639	0	lncRNA	6044-1_{1..2321}	"transcript_id ""ENST00000577994.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000577994.1"" | genecode_v17"	chr18	 22208146	 22210466	+	ENSG00000265485.1	ENST00000577994.1	RP11-449D8.1	RP11-449D8.1-001	NA	NA	NA	inter
CUST_50142_PI429285431	2.4777315	P	2.1896422	A	1.22102208920815	0	lncRNA	53868-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00029161 range=chr9:100340-115953 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029161 range=chr9:100340-115953 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	   100340	   103339	-	NA	NA	NA	NA	CBWD1	NA	chr9:121038-125953	inter
CUST_37615_PI429285431	5.55333	P	5.4659424	P	1.06244458860564	0	lncRNA	38713-1_{1..1611}	n346094|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1644|NULL|-1.4378100|-0.1677484	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346094|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1644|NULL|-1.4378100|-0.1677484	chr16	 74371457	 74373067	-	NA	NA	NA	NA	NPIPL2	NA	chr16:74411872-74412020	inter
CUST_11129_PI429285431	3.8788657	P	3.268613	P	1.52652656933206	0	lncRNA	12687-1_{1..1350}	lnc-FOXA2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXA2-3:2	chr20	 22504591	 22505940	-	lnc-FOXA2-3	lnc-FOXA2-3:2	XLOC_013683	linc-NKX2-2-5	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70"	NA	inter
CUST_5124_PI429285431	0.95472896	A	0.9157538	A	1.02738374996344	0	lncRNA	5064-1_{1..557}	"transcript_id ""ENST00000568033.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568033.1"" | genecode_v17"	chr15	 28964523	 28965079	-	ENSG00000261480.1	ENST00000568033.1	RP11-578F21.6	RP11-578F21.6-001	LOC653720	NA	chr15:28954523-28983530	inter
CUST_16327_PI429285431	10.150791	P	10.060188	P	1.06481514784767	0	lncRNA	18028-1_{1..289}	lnc-C10orf114-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf114-1:1	chr10	 21703606	 21703894	-	lnc-C10orf114-1	lnc-C10orf114-1:1	XLOC_008746	linc-C10orf113-2	NA	NA	NA	inter
CUST_20672_PI429285431	1.531169	A	1.6518933	A	0.919725789580448	0	lncRNA	22310-1_{1..3000}	lnc-ZNF23-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZNF23-1:1	chr16	 71481500	 71484499	-	lnc-ZNF23-1	lnc-ZNF23-1:1	ENSG00000262086.1	RP11-510M2.10	ZNF23	NA	chr16:71481500-71496117	inner
LNCA_21_P0002936	5.1409454	P	5.0988197	P	1.02962978972866	0	lncRNA	TCONS_00005964	NA	NA	NA	NA	XLOC_002595	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002595), lincRNA [TCONS_00005964]"	chr3:20387508-20389497	hs|3p24.3	Agilent_HUMAN_G3V2	TCONS_00005964	TCONS_00005964	chr3	 20387508	 20389497	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22005_PI429285431	0.9041973	A	0.91049993	A	0.995640878456875	0	lncRNA	23614-1_{1..663}	lnc-HJURP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HJURP-2:1	chr2	234617087	234617749	-	lnc-HJURP-2	lnc-HJURP-2:1	ENSG00000224814.1	AC114812.8	UGT1A10	"hg19_refFlat_UGT1A6:range=chr2:234601651-2346812055'pad=0,hg19_refFlat_UGT1A6:range=chr2:234601651-2346812055'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60chr2:234607087-234627345"	NA	inner
CUST_1930_PI429285431	0.89244574	A	1.1903344	A	0.813441973099801	0	lncRNA	1922-1_{1..420}	"transcript_id ""ENST00000505848.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505848.1"" | genecode_v17"	chr4	147032311	147032730	-	ENSG00000248809.1	ENST00000505848.1	RP11-6L6.3	RP11-6L6.3-005	NA	NA	NA	inter
CUST_4317_PI429285431	3.3991365	P	3.712291	P	0.804879937415497	0	lncRNA	4272-1_{1..551}	"transcript_id ""ENST00000542875.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000542875.1"" | genecode_v17"	chr12	 68835668	 68836218	-	ENSG00000251301.2	ENST00000542875.1	RP11-81H14.2	RP11-81H14.2-002	NA	NA	NA	inter
CUST_4729_PI429285431	1.318341	A	1.8241252	A	0.704277452216863	0	lncRNA	4674-1_{1..2569}	"transcript_id ""ENST00000547584.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000547584.1"" | genecode_v17"	chr14	 20006913	 20009481	+	ENSG00000258276.1	ENST00000547584.1	RP11-244H18.1	RP11-244H18.1-001	POTEM	"hg19_refFlat_POTEG:range=chr14:19553417-195830885'pad=0,hg19_refFlat_POTEG:range=chr14:19553417-195830885'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC100288966:range=chrUn_gl000213:108026-1392875'pad=0,hg19_refFlat_LOC100288966:range=chrUn_gl000213:108026-1392875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_POTEB:range=chr15:21040720-210716105'pad=0,hg19_refFlat_POTEB:range=chr15:21040720-210716105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_POTEE:range=chr2:131975976-1320222565'pad=0,hg19_refFlat_POTEE:range=chr2:131975976-1320222565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_POTEB:range=chr15:22051872-220827705'pad=0,hg19_refFlat_POTEB:range=chr15:22051872-220827705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_POTEF:range=chr2:130831817-1308780885'pad=0,hg19_refFlat_POTEF:range=chr2:130831817-1308780885'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_POTED:range=chr21:14982550-150138875'pad=0,hg19_refFlat_POTED:range=chr21:14982550-150138875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_POTEC:range=chr18:14511897-145431455'pad=0,hg19_refFlat_POTEC:range=chr18:14511897-145431455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_POTEM:range=chr14:19990548-200202205'pad=0,hg19_refFlat_POTEM:range=chr14:19990548-200202205'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_POTEA:range=chr8:43147628-432120385'pad=0,hg19_refFlat_POTEA:range=chr8:43147628-432120385'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_POTEH:range=chr22:16258186-162878855'pad=0,hg19_refFlat_POTEH:range=chr22:16258186-162878855'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10chr14:19996913-20020272"	NA	inner
CUST_35060_PI429285431	1.6205834	A	0.8992555	A	1.64869884848111	0	lncRNA	36470-1_{1..986}	n342008|BC033542|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4489|NULL|-1.3686600|-0.3559688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342008|BC033542|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4489|NULL|-1.3686600|-0.3559688	chr12	106750751	106751736	-	NA	NA	NA	NA	POLR3B	"hg19_refFlat_POLR3B:range=chr12:106751658-1069033275'pad=0,hg19_refFlat_POLR3B:range=chr12:106751658-1069033275'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.50chr12:106751436-106761719"	NA	inner
CUST_33045_PI429285431	5.274746	P	5.645333	P	0.773467726205478	0	lncRNA	34658-1_{1..1755}	n339734|AK094347|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2180|NULL|-0.8786460|-0.3281793	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339734|AK094347|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2180|NULL|-0.8786460|-0.3281793	chr20	 57560741	 57562495	-	NA	NA	NA	NA	CTSZ	"hg19_refFlat_TH1L:range=chr20:57556311-575697315'pad=0,hg19_refFlat_TH1L:range=chr20:57556311-575697315'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60chr20:57570242-57572496"	NA	inner
CUST_42562_PI429285431	6.646232	P	6.5202827	P	1.09122552792027	0	lncRNA	45386-1_{1..122}	ENST00000390964 ncrna:snoRNA chromosome:GRCh37:1:118231243:118231364:-1 gene:ENSG00000212266 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390964 ncrna:snoRNA chromosome:GRCh37:1:118231243:118231364:-1 gene:ENSG00000212266 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	118231243	118231364	-	ENSG00000212266	ENST00000390964	NA	NA	NA	NA	NA	inter
CUST_27167_PI429285431	2.351822	A	2.1621392	A	1.1405129279583	0	lncRNA	28706-1_{1..304}	n324295|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043207|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043207|-1.3995400|-0.5486226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324295|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043207|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043207|-1.3995400|-0.5486226	chr6	169209918	169210221	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006486	1.8097693	A	1.9887575	A	0.883322276265594	0	lncRNA	TCONS_00017150	NA	NA	NA	NA	XLOC_007949	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007949), lincRNA [TCONS_00017150]"	chrX:36033015-36033074	hs|Xp21.1	Agilent_HUMAN_G3V2	TCONS_00017150	TCONS_00017150	chrX	 36033015	 36033074	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16430_PI429285431	7.8794637	P	8.12128	P	0.845679961913357	0	lncRNA	18130-1_{1..649}	lnc-C20orf166-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf166-2:1	chr20	 61197859	 61198507	+	lnc-C20orf166-2	lnc-C20orf166-2:1	XLOC_013602	linc-SLCO4A1-2	NA	NA	NA	inter
CUST_28094_PI429285431	0.9096705	A	0.9098771	A	0.999856806045729	0	lncRNA	29715-1_{1..572}	n325365|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324283|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324283|-1.0513500|-0.3689381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325365|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324283|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324283|-1.0513500|-0.3689381	chr2	 23451739	 23452310	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46968_PI429285431	1.0775228	A	0.9174855	A	1.11731602522287	0	lncRNA	51072-1_{1..853}	"gi|310124444|ref|XR_109464.1| PREDICTED: Homo sapiens DLGAP1 antisense RNA 2 (DLGAP1-AS2), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124444|ref|XR_109464.1| PREDICTED: Homo sapiens DLGAP1 antisense RNA 2 (DLGAP1-AS2), misc_RNA"	NA	NA	NA	NA	NA	XR_109464.1	NA	NA	NA	NA	NA	Unknown
CUST_39070_PI429285431	0.8995595	A	0.893733	A	1.00404678827128	0	lncRNA	40045-1_{1..1168}	n385549|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ads.2||-0.9661650|-0.2957307	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,UCSC,"	>n385549|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ads.2||-0.9661650|-0.2957307	chr9	 46763790	 46764957	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21809_PI429285431	4.725392	P	5.1393714	P	0.750550265661764	0	lncRNA	23419-1_{1..862}	lnc-AMDHD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AMDHD1-1:1	chr12	 96404796	 96405657	+	lnc-AMDHD1-1	lnc-AMDHD1-1:1	ENSG00000257878.1	RP11-256L6.3	LTA4H	NA	chr12:96394796-96415267	inner
CUST_50693_PI429285431	5.112668	P	4.8294234	P	1.21692866385513	0	lncRNA	54364-1_{1..389}	hg19_lincRNAsTranscripts_TCONS_l2_00003559 range=chr10:49267872-49272541 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003559 range=chr10:49267872-49272541 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 49267872	 49268260	-	NA	NA	NA	NA	FRMPD2	NA	chr10:49258300-49282541	inter
CUST_33122_PI429285431	4.897314	P	4.9241014	P	0.981603705351561	0	lncRNA	34720-1_{1..3000}	n339810|BC028154|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2257|NULL|10.2030000|-0.1695580	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339810|BC028154|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2257|NULL|10.2030000|-0.1695580	chr4	  3294761	  3297760	+	NA	NA	NA	NA	RGS12	NA	chr4:3315874-3434259	inner
CUST_21179_PI429285431	0.89200085	A	0.892599	A	0.999585479951133	0	lncRNA	22804-1_{1..241}	lnc-TM4SF20-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TM4SF20-1:1	chr2	228189884	228190124	-	lnc-TM4SF20-1	lnc-TM4SF20-1:1	ENSG00000236432.2	AC097662.2	MFF	NA	chr2:228192228-228199917	inter
CUST_22733_PI429285431	2.055139	A	1.959931	A	1.06821940706642	0	lncRNA	24317-1_{1..412}	lnc-SOX9-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SOX9-5:1	chr17	 70639840	 70640251	+	lnc-SOX9-5	lnc-SOX9-5:1	ENSG00000263893.1	CTD-3010D24.3	SLC39A11	NA	chr17:70642085-70650152	inter
CUST_46733_PI429285431	7.020393	P	5.6084957	P	2.66086865824969	0	lncRNA	50885-2_{3001..3540}	"gi|378925607|ref|NR_046396.1| Homo sapiens XIAP associated factor 1 (XAF1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378925607|ref|NR_046396.1| Homo sapiens XIAP associated factor 1 (XAF1), transcript variant 3, non-coding RNA"	Chr17	  6662156	  6662695	+	54739	NR_046396.1	NA	NA	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
CUST_9208_PI429285431	1.053334	A	0.9079097	A	1.10605589912789	0	lncRNA	10720-1_{1..3000}	lnc-CHFR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHFR-1:1	chr12	133489682	133492681	-	lnc-CHFR-1	lnc-CHFR-1:1	ENSG00000250790	ENST00000503695	ZNF605	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr12:133498019-133501318"	NA	inter
CUST_45941_PI429285431	4.8969197	P	4.265361	P	1.54923789947989	0	lncRNA	50243-1_{1..729}	"gi|397139430|ref|XR_132808.2| PREDICTED: Homo sapiens chromosome 11 open reading frame 39 (C11orf39), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139430|ref|XR_132808.2| PREDICTED: Homo sapiens chromosome 11 open reading frame 39 (C11orf39), misc_RNA"	NA	NA	NA	NA	NA	XR_132808.2	NA	NA	NA	NA	NA	Unknown
CUST_20684_PI429285431	0.9060192	A	0.9066971	A	0.999530225904719	0	lncRNA	22320-1_{1..595}	lnc-OSR2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-OSR2-2:1	chr8	100132332	100132926	+	lnc-OSR2-2	lnc-OSR2-2:1	ENSG00000253532.1	CTD-2340D6.1	VPS13B	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr8:100122332-100142809"	NA	inner
CUST_197_PI429285431	5.5886736	P	5.558993	P	1.02078610761793	0	lncRNA	187-1_{1..498}	"transcript_id ""ENST00000422638.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422638.1"" | genecode_v17"	chr1	 30181698	 30182195	-	ENSG00000228176.1	ENST00000422638.1	RP4-656G21.1	RP4-656G21.1-001	NA	NA	NA	inter
LNCA_21_P0007051	1.8895617	A	0.9050863	A	1.97859371584508	0	lncRNA	TCONS_00018688	NA	NA	NA	NA	XLOC_008419	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008419), lincRNA [TCONS_00018688]"	chr10:26881851-26881910	hs|10p12.1	Agilent_HUMAN_G3V2	TCONS_00018688	TCONS_00018688	chr10	 26881851	 26881910	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17389_PI429285431	4.3287244	P	4.0878787	P	1.18168515586399	0	lncRNA	19112-1_{1..935}	lnc-C10orf31-6:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf31-6:5	chr10	 10988749	 10989683	-	lnc-C10orf31-6	lnc-C10orf31-6:5	XLOC_008731	linc-KIN-1	NA	NA	NA	inter
CUST_26076_PI429285431	1.6495732	A	1.6555849	A	0.995841676962957	0	lncRNA	27589-1_{1..512}	lnc-AC007405.2.1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC007405.2.1-3:3	chr2	171673364	171673875	-	lnc-AC007405.2.1-3	lnc-AC007405.2.1-3:3	ENSG00000235934.1	AC007405.8	GAD1	NA	chr2:171673200-171683682	inner
CUST_45587_PI429285431	1.2275591	A	1.762318	A	0.690274024125859	0	lncRNA	49978-1_{1..2369}	"gi|397139973|ref|XR_159066.1| PREDICTED: Homo sapiens anthrax toxin receptor-like (ANTXRL), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139973|ref|XR_159066.1| PREDICTED: Homo sapiens anthrax toxin receptor-like (ANTXRL), misc_RNA"	NA	NA	NA	NA	NA	XR_159066.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006372	4.7395883	P	4.7254705	P	1.00983374992089	0	lncRNA	TCONS_00016693	NA	NA	NA	NA	XLOC_007562	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007562), lincRNA [TCONS_00016693]"	chr9:128174469-128174707	hs|9q33.3	Agilent_HUMAN_G3V2	TCONS_00016693	TCONS_00016693	chr9	128174469	128174707	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42621_PI429285431	7.6261387	P	7.692844	P	0.95481603494469	0	lncRNA	45486-1_{1..135}	ENST00000384142 ncrna:snoRNA chromosome:GRCh37:2:165544153:165544287:-1 gene:ENSG00000206869 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384142 ncrna:snoRNA chromosome:GRCh37:2:165544153:165544287:-1 gene:ENSG00000206869 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	165544153	165544287	-	ENSG00000206869	ENST00000384142	NA	NA	COBLL1	NA	chr2:165541256-165554287	inner
CUST_52152_PI429285431	1.9999601	A	2.7640996	A	0.588804458167883	0	lncRNA	55676-1_{1..343}	hg19_lincRNAsTranscripts_TCONS_l2_00017632 range=chr22:22012077-22012712 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017632 range=chr22:22012077-22012712 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 22012077	 22012419	+	NA	NA	NA	NA	PPIL2	NA	chr22:22020273-22022712	inter
CUST_47839_PI429285431	11.983018	P	12.0003605	P	0.988051057459561	0	lncRNA	51746-1_{1..1362}	"gi|397140216|ref|XR_159176.1| PREDICTED: Homo sapiens neurogenic locus notch homolog protein 2-like (LOC100996717), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397140216|ref|XR_159176.1| PREDICTED: Homo sapiens neurogenic locus notch homolog protein 2-like (LOC100996717), misc_RNA"	NW_003871055.3	  6200466	  6201827	+	100996717	XR_159176.2	NA	NA	NA	NA	NA	Unknown
CUST_42126_PI429285431	0.92480373	A	0.92677987	A	0.998631181817996	0	lncRNA	44120-1_{1..72}	ENST00000580089 ncrna:miRNA chromosome:GRCh37:2:12339256:12339327:1 gene:ENSG00000264089 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580089 ncrna:miRNA chromosome:GRCh37:2:12339256:12339327:1 gene:ENSG00000264089 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 12339256	 12339327	+	ENSG00000264089	ENST00000580089	NA	NA	NA	NA	NA	inter
CUST_884_PI429285431	0.9111323	A	0.91661495	A	0.996206928548728	0	lncRNA	874-1_{1..675}	"transcript_id ""ENST00000422723.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422723.1"" | genecode_v17"	chr2	 58654934	 58655608	+	ENSG00000233723.3	ENST00000422723.1	AC007092.1	AC007092.1-003	NA	NA	NA	inter
CUST_15034_PI429285431	3.9256864	P	4.4369407	P	0.701612180814876	0	lncRNA	16697-1_{1..210}	lnc-FRMD4A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRMD4A-1:3	chr10	 13570473	 13570682	-	lnc-FRMD4A-1	lnc-FRMD4A-1:3	XLOC_008735	linc-BEND7-1	NA	NA	NA	inter
LNCA_21_P0001182	0.9239708	A	0.9117499	A	1.00850686182384	0	lncRNA	ENST00000449345	NA	NA	NA	NA	XLOC_001051	NA	ENST00000449345	THC2686381	NA	"BROAD Institute lincRNA (XLOC_001051), lincRNA [TCONS_00000648]"	chr1:157206905-157206846	hs|1q23.1	Agilent_HUMAN_G3V2	ENST00000449345	ENST00000449345	chr1	157206846	157206905	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20124_PI429285431	1.5068235	A	1.448296	A	1.04140230135445	0	lncRNA	21772-1_{1..265}	lnc-CERKL-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CERKL-3:1	chr2	181844793	181845057	-	lnc-CERKL-3	lnc-CERKL-3:1	ENSG00000236153.1	AC104076.3	UBE2E3	NA	chr2:181834793-181854817	inter
CUST_39798_PI429285431	10.087665	P	10.61668	P	0.693027737234416	0	lncRNA	40708-1_{1..1827}	n406194|NR_003615|lncRNA|Homosapiens||RefGeneNoncode|NR_003615||1.7785000|-0.1730232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406194|NR_003615|lncRNA|Homosapiens||RefGeneNoncode|NR_003615||1.7785000|-0.1730232	chr5	177302261	177304087	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012764	5.3009157	P	5.903434	P	0.658603324725976	0	lncRNA	ENST00000513681	NA	BC092460	NA	Hs.519164	XLOC_l2_011007	NA	ENST00000513681	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011007), lincRNA [TCONS_l2_00021807]"	chr4:190582578-190582637	hs|4q35.2	Agilent_HUMAN_G3V2	ENST00000513681	ENST00000513681	chr4	190582578	190582637	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6838_PI429285431	3.9340155	P	3.6486027	P	1.2187589386936	0	lncRNA	6786-1_{1..449}	"transcript_id ""ENST00000423808.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423808.1"" | genecode_v17"	chr21	 29462633	 29463081	+	ENSG00000232079.1	ENST00000423808.1	AL035610.1	AL035610.1-003	NA	NA	NA	inter
CUST_42195_PI429285431	11.72223	P	11.8267565	P	0.930110159505155	0	lncRNA	44263-1_{1..83}	ENST00000582972 ncrna:miRNA chromosome:GRCh37:15:34665990:34666072:-1 gene:ENSG00000266205 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582972 ncrna:miRNA chromosome:GRCh37:15:34665990:34666072:-1 gene:ENSG00000266205 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 34665990	 34666072	-	ENSG00000266205	ENST00000582972	NA	NA	GOLGA8A	NA	chr15:34671269-34676072	inter
CUST_7100_PI429285431	4.5888653	P	5.021839	P	0.740733402287262	0	lncRNA	7035-1_{1..561}	"transcript_id ""ENST00000602776.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602776.1"" | genecode_v17"	chrX	 73494191	 73494751	-	ENSG00000230590.3	ENST00000602776.1	FTX	FTX-006	NA	NA	NA	inter
LNCA_21_P0004733	3.9969866	P	3.7065525	P	1.22300821962525	0	lncRNA	ENST00000443504	NA	NA	NA	NA	XLOC_005631	NA	ENST00000443504	NA	NA	"BROAD Institute lincRNA (XLOC_005631), lincRNA [TCONS_00011459]"	chr6:19290626-19290567	hs|6p22.3	Agilent_HUMAN_G3V2	ENST00000443504	ENST00000443504	chr6	 19290567	 19290626	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14570_PI429285431	0.8897706	A	1.3149972	A	0.744721751050883	0	lncRNA	16236-2_{3001..3760}	lnc-GNG8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNG8-1:1	chr19	 47142404	 47143163	-	lnc-GNG8-1	lnc-GNG8-1:1	XLOC_013368	linc-GNG8	DACT3	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80chr19:47150869-47152802"	NA	inter
CUST_25945_PI429285431	0.9074203	A	0.92172074	A	0.990136655355659	0	lncRNA	27464-1_{1..596}	lnc-ATP2C2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATP2C2-1:1	chr16	 84530683	 84531278	+	lnc-ATP2C2-1	lnc-ATP2C2-1:1	ENSG00000261243.1	RP11-517C16.4	KIAA1609	"hg19_refFlat_KIAA1609:range=chr16:84513519-845316925'pad=0,hg19_refFlat_KIAA1609:range=chr16:84513519-845316925'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80chr16:84520683-84538288"	NA	inner
CUST_22203_PI429285431	0.8878771	A	0.8978265	A	0.993127327026581	0	lncRNA	23803-1_{1..856}	lnc-CTAGE4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CTAGE4-1:1	chr7	143940840	143941695	+	lnc-CTAGE4-1	lnc-CTAGE4-1:1	ENSG00000244198.1	RP4-545C24.1	NA	NA	NA	inter
CUST_5133_PI429285431	6.7616706	P	6.832791	P	0.951898464571862	0	lncRNA	5073-1_{1..366}	"transcript_id ""ENST00000561999.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561999.1"" | genecode_v17"	chr15	 32828915	 32829280	+	ENSG00000261064.1	ENST00000561999.1	RP11-1000B6.3	RP11-1000B6.3-001	NA	"hg19_refFlat_WHAMM:range=chr15:83478479-835022885'pad=0,hg19_refFlat_WHAMM:range=chr15:83478479-835022885'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.30"	NA	inter
LNCA_19_P00316857	6.437582	P	6.9635606	P	0.694487869387556	0	lncRNA	ENST00000451228	XR_110395	XR_110395	NA	NA	LOC440993	NA	ENST00000451228	THC2565414	NA	"PREDICTED: Homo sapiens hypothetical LOC440993 (LOC440993), miscRNA [XR_110395]"	chr3:195438612-195438671	hs|3q29	Agilent_HUMAN_G3V2	ENST00000451228	ENST00000451228	chr3	195438612	195438671	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29238_PI429285431	1.1276852	A	0.99972713	A	1.09274597944042	0	lncRNA	30989-1_{1..500}	n328097|M24746|snRNA|Homosapiens||GENEBANK|NULL|NULL|-1.1023300|-0.2520538	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n328097|M24746|snRNA|Homosapiens||GENEBANK|NULL|NULL|-1.1023300|-0.2520538	chr6	150647699	150648198	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46074_PI429285431	10.488985	P	10.676541	P	0.878091995293645	0	lncRNA	50345-2_{3001..3892}	"gi|296010924|ref|NR_033659.1| Homo sapiens signal transducer and activator of transcription 6, interleukin-4 induced (STAT6), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|296010924|ref|NR_033659.1| Homo sapiens signal transducer and activator of transcription 6, interleukin-4 induced (STAT6), transcript variant 6, non-coding RNA"	Chr12	 57492187	 57493078	-	6778	NR_033659.1	NA	NA	NA	NA	NA	inter
CUST_23042_PI429285431	3.1216335	P	3.8896637	P	0.587218693202925	0	lncRNA	24613-1_{1..434}	lnc-TACR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TACR2-1:1	chr10	 71027857	 71028290	-	lnc-TACR2-1	lnc-TACR2-1:1	ENSG00000231748.1	RP11-227H15.5	HK1	"hg19_refFlat_HKDC1:range=chr10:70980192-710265135'pad=0,hg19_refFlat_HKDC1:range=chr10:70980192-710265135'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.10chr10:71029756-71037904"	NA	inter
CUST_4372_PI429285431	1.1686593	A	1.5349076	A	0.775797321513539	0	lncRNA	4326-1_{1..1406}	"transcript_id ""ENST00000546725.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000546725.1"" | genecode_v17"	chr12	 91311800	 91313205	+	ENSG00000196243.5	ENST00000546725.1	LINC00615	LINC00615-001	C12orf12	NA	chr12:91345992-91348953	inter
CUST_25196_PI429285431	0.89555436	A	0.89980936	A	0.997055003780919	0	lncRNA	26727-1_{1..200}	lnc-ELF2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ELF2-2:4	chr4	139742544	139742743	-	lnc-ELF2-2	lnc-ELF2-2:4	ENSG00000250195.1	RP11-371F15.3	NA	NA	NA	inter
CUST_126_PI429285431	0.9064096	A	1.0801277	A	0.886554913497046	0	lncRNA	118-1_{1..581}	"transcript_id ""ENST00000412115.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412115.1"" | genecode_v17"	chr1	   740312	   740892	+	ENSG00000237491.3	ENST00000412115.1	RP11-206L10.9	RP11-206L10.9-016	NA	NA	NA	inter
CUST_44769_PI429285431	4.2129316	P	2.987338	A	2.33851648687718	0	lncRNA	49311-1_{1..3000}	"gi|289063384|ref|NR_033327.1| Homo sapiens EF-hand domain (C-terminal) containing 1 (EFHC1), transcript variant B, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|289063384|ref|NR_033327.1| Homo sapiens EF-hand domain (C-terminal) containing 1 (EFHC1), transcript variant B, non-coding RNA"	Chr6	 52284994	 52287993	+	114327	NR_033327.1	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20"	NA	inter
LNCA_21_P0006057	4.7737956	P	4.1275373	P	1.56510375443547	0	lncRNA	ENST00000435157	NA	NA	NA	NA	XLOC_007581	NA	ENST00000435157	NA	NA	"BROAD Institute lincRNA (XLOC_007581), lincRNA [TCONS_00015757]"	chr9:132021484-132023668	hs|9q34.11	Agilent_HUMAN_G3V2	ENST00000435157	ENST00000435157	chr9	132021484	132023668	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50269_PI429285431	0.92187977	A	1.0078286	A	0.942164690330923	0	lncRNA	53992-1_{1..2416}	hg19_lincRNAsTranscripts_TCONS_l2_00029367 range=chr9:69098721-69148492 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029367 range=chr9:69098721-69148492 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 69098721	 69101136	-	NA	NA	NA	NA	LOC100507370	NA	chr9:69088721-69089939	inter
CUST_45051_PI429285431	0.89848906	A	0.9016866	A	0.997786088489469	0	lncRNA	49543-3_{6001..6431}	"gi|298566295|ref|NR_033767.1| Homo sapiens forkhead box P2 (FOXP2), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|298566295|ref|NR_033767.1| Homo sapiens forkhead box P2 (FOXP2), transcript variant 8, non-coding RNA"	Chr7	114061052	114061482	+	93986	NR_033767.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0012452	2.8946369	A	1.6528873	A	2.36485151165076	0	lncRNA	TCONS_l2_00019377	NA	NA	NA	NA	XLOC_l2_010267	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010267), lincRNA [TCONS_l2_00019377]"	chr3:90263108-90263049	hs|3p11.1	Agilent_HUMAN_G3V2	TCONS_l2_00019377	TCONS_l2_00019377	chr3	 90263049	 90263108	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50540_PI429285431	1.1823328	A	0.90111065	A	1.21522390089082	0	lncRNA	54233-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030633 range=chrX:152661098-152666834 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030633 range=chrX:152661098-152666834 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	152661098	152664097	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32379_PI429285431	1.5421096	A	0.91445625	A	1.54504981094136	0	lncRNA	34056-1_{1..671}	n338970|CR624953|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1398|NULL|-1.2957100|-0.1429589	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338970|CR624953|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1398|NULL|-1.2957100|-0.1429589	chr19	 58038428	 58039098	-	NA	NA	NA	NA	ZNF549	NA	chr19:58038693-58049099	inner
CUST_22574_PI429285431	1.6221894	A	1.6966968	A	0.949666323753003	0	lncRNA	24161-1_{1..456}	lnc-ZNF852-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF852-2:1	chr3	 44727051	 44727506	-	lnc-ZNF852-2	lnc-ZNF852-2:1	ENSG00000236869.1	RP11-944L7.4	NA	"hg19_refFlat_ZNF167:range=chr3:44598540-446244835'pad=0,hg19_refFlat_ZNF167:range=chr3:44598540-446244835'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.40;hg19_refFlat_ZNF167:range=chr3:44598540-446128675'pad=0,hg19_refFlat_ZNF167:range=chr3:44598540-446128675'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.40;hg19_refFlat_ZSCAN20:range=chr1:33944890-339610765'pad=0,hg19_refFlat_ZSCAN20:range=chr1:33944890-339610765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40"	NA	inter
CUST_17984_PI429285431	0.9098441	A	1.0770149	A	0.890587458127053	0	lncRNA	19717-1_{1..342}	lnc-HELZ-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HELZ-1:2	chr17	 65040410	 65040751	-	lnc-HELZ-1	lnc-HELZ-1:2	XLOC_012552	linc-APOH	CACNG1	NA	chr17:65040652-65050458	inter
CUST_35496_PI429285431	1.5896962	A	0.94255733	A	1.5660593299776	0	lncRNA	36904-2_{3001..4204}	n342595|AL833330|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5096|NULL|0.2538630|-0.2982721	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342595|AL833330|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5096|NULL|0.2538630|-0.2982721	chr10	 48930412	 48931615	-	NA	NA	NA	NA	FRMPD2	"hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60chr10:49258300-49258867"	NA	inter
CUST_40403_PI429285431	6.277766	P	4.285888	P	3.97754430358903	0	lncRNA	41191-1_{1..3000}	n409266|NR_033438|lncRNA|Homosapiens||RefGeneNoncode|NR_033438||4.3754700|-0.3456541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409266|NR_033438|lncRNA|Homosapiens||RefGeneNoncode|NR_033438||4.3754700|-0.3456541	chr3	145910123	145913122	-	NA	NA	NA	NA	PLSCR4	NA	chr3:145910122-145968966	inner
CUST_495_PI429285431	3.3949635	A	3.0510263	A	1.26921563631385	0	lncRNA	486-1_{1..543}	"transcript_id ""ENST00000434447.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434447.1"" | genecode_v17"	chr1	180875787	180876329	+	ENSG00000225857.1	ENST00000434447.1	RP11-46A10.2	RP11-46A10.2-002	KIAA1614	NA	chr1:180882313-180888302	inter
CUST_19460_PI429285431	5.343917	P	5.4480405	P	0.930370011200305	0	lncRNA	21119-1_{1..2290}	lnc-BAG2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-BAG2-2:2	chr6	 57512472	 57514761	+	lnc-BAG2-2	lnc-BAG2-2:2	ENSG00000146143.12	PRIM2	PRIM2	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00chr6:57502472-57512702"	NA	inner
CUST_43449_PI429285431	10.545633	P	10.474639	P	1.05044017534379	0	lncRNA	48256-1_{1..914}	"gi|223029493|ref|NR_026768.1| Homo sapiens ribosomal protein S15a pseudogene 10 (RPS15AP10), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223029493|ref|NR_026768.1| Homo sapiens ribosomal protein S15a pseudogene 10 (RPS15AP10), non-coding RNA"	Chr1	 46111444	 46112357	-	728963	NR_026768.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90"	NA	inter
CUST_39685_PI429285431	1.3488302	A	1.0632577	A	1.21889385741866	0	lncRNA	40625-1_{1..1502}	n405397|NR_002140|lncRNA|Homosapiens||RefGeneNoncode|NR_002140||5.5299300|-0.1346175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405397|NR_002140|lncRNA|Homosapiens||RefGeneNoncode|NR_002140||5.5299300|-0.1346175	chr7	142759380	142760881	-	NA	NA	NA	NA	OR6V1	"hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0,hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70chr7:142749380-142750379"	NA	inter
CUST_17471_PI429285431	0.9278838	A	0.9489385	A	0.985511970396046	0	lncRNA	19197-1_{1..756}	lnc-ARRDC4-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARRDC4-5:1	chr15	 98101612	 98102367	+	lnc-ARRDC4-5	lnc-ARRDC4-5:1	XLOC_011374	linc-ARRDC4-2	NA	NA	NA	inter
CUST_20128_PI429285431	2.956937	A	2.6602616	A	1.22831058490683	0	lncRNA	21775-1_{1..813}	lnc-TRIM9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM9-2:1	chr14	 51852279	 51853091	-	lnc-TRIM9-2	lnc-TRIM9-2:1	ENSG00000258942.1	RP11-255G12.2	NA	NA	NA	inter
LNCA_21_P0005539	2.4579074	A	2.1733518	A	1.21803500894709	0	lncRNA	TCONS_00014003	NA	NA	NA	NA	XLOC_006644	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006644), lincRNA [TCONS_00014003]"	chr7:149917350-149903393	hs|7q36.1	Agilent_HUMAN_G3V2	TCONS_00014003	TCONS_00014003	chr7	149903393	149917350	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25361_PI429285431	0.8944329	A	0.8958608	A	0.99901074477677	0	lncRNA	26891-1_{1..365}	lnc-C11orf46-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf46-1:1	chr11	 30450516	 30450880	+	lnc-C11orf46-1	lnc-C11orf46-1:1	ENSG00000255480.1	RP4-710M3.2	MPPED2	NA	chr11:30440516-30460815	inner
CUST_19600_PI429285431	1.3916508	A	1.2642782	A	1.09230261464517	0	lncRNA	21256-1_{1..1878}	lnc-RCL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RCL1-1:1	chr9	  4884488	  4886365	+	lnc-RCL1-1	lnc-RCL1-1:1	ENSG00000243754.1	RP11-125K10.4	NA	"hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40"	NA	inter
CUST_3069_PI429285431	2.4121788	A	2.6772513	A	0.832156915137336	0	lncRNA	3048-1_{1..360}	"transcript_id ""ENST00000518181.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518181.1"" | genecode_v17"	chr8	 35861834	 35862193	-	ENSG00000253524.1	ENST00000518181.1	RP11-89M20.2	RP11-89M20.2-001	NA	NA	NA	inter
CUST_46632_PI429285431	5.069382	P	3.8411014	P	2.34287600071116	0	lncRNA	50807-2_{3001..3312}	"gi|388240760|ref|NR_049749.1| Homo sapiens zinc finger protein 267 (ZNF267), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388240760|ref|NR_049749.1| Homo sapiens zinc finger protein 267 (ZNF267), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_049749.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002461	0.9107178	A	0.9039904	A	1.00467396741126	0	lncRNA	TCONS_00004313	NA	NA	NA	NA	XLOC_002168	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002168), lincRNA [TCONS_00004313]"	chr2:74634820-74634761	hs|2p13.1	Agilent_HUMAN_G3V2	TCONS_00004313	TCONS_00004313	chr2	 74634761	 74634820	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36536_PI429285431	1.8354465	A	1.4720966	A	1.2864094413091	0	lncRNA	37734-1_{1..447}	n345036|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_585|NULL|-1.3173000|-0.3070618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345036|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_585|NULL|-1.3173000|-0.3070618	chr9	118258509	118258955	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39099_PI429285431	5.7083817	P	5.956411	P	0.842045852146704	0	lncRNA	40075-1_{1..867}	n385651|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azt.1||-0.9851600|-0.2020627	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385651|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azt.1||-0.9851600|-0.2020627	chr9	102121666	102122532	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006384	8.532373	P	8.687868	P	0.8978242694719	0	lncRNA	THC2596221	NA	NA	NA	NA	XLOC_007770	NA	NA	THC2596221	NA	"BROAD Institute lincRNA (XLOC_007770), lincRNA [TCONS_00016827]"	chr9:093263767-093263708	hs|9q22.2	Agilent_HUMAN_G3V2	THC2596221	THC2596221	chr9	 93263708	 93263767	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16269_PI429285431	1.203739	A	0.9132979	A	1.22301415371254	0	lncRNA	17972-1_{1..310}	lnc-CEP44-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEP44-5:2	chr4	175777682	175777991	+	lnc-CEP44-5	lnc-CEP44-5:2	XLOC_003789	linc-ADAM29-1	NA	NA	NA	inter
CUST_8362_PI429285431	2.5750859	A	1.1796349	A	2.6307077758037	0	lncRNA	9942-1_{1..1341}	lnc-LRIG2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRIG2-3:1	chr1	113516838	113518178	+	lnc-LRIG2-3	lnc-LRIG2-3:1	ENSG00000250717	ENST00000513058	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20"	NA	inter
CUST_5217_PI429285431	2.4310393	A	2.0831268	A	1.27271774212254	0	lncRNA	5158-1_{1..864}	"transcript_id ""ENST00000559870.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559870.1"" | genecode_v17"	chr15	 69373219	 69374082	+	ENSG00000259222.1	ENST00000559870.1	RP11-809H16.5	RP11-809H16.5-001	NA	NA	NA	inter
CUST_50580_PI429285431	6.623557	P	6.606866	P	1.01163650300745	0	lncRNA	54273-1_{1..475}	hg19_lincRNAsTranscripts_TCONS_l2_00003442 range=chr10:27255640-27264921 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003442 range=chr10:27255640-27264921 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 27255640	 27256114	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005833	0.90557224	A	0.89759284	A	1.00554622227046	0	lncRNA	BC010527	NA	BC010527	NA	Hs.677491	XLOC_007087	NA	NA	THC2636366	NA	"BROAD Institute lincRNA (XLOC_007087), lincRNA [TCONS_00015012]"	chr8:57408175-57408116	hs|8q12.1	Agilent_HUMAN_G3V2	BC010527	BC010527	chr8	 57408116	 57408175	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44371_PI429285431	4.1569624	P	3.8261752	P	1.25769944532216	0	lncRNA	48991-1_{1..708}	"gi|310119384|ref|XR_110055.1| PREDICTED: Homo sapiens USP46 antisense RNA 1, transcript variant 1 (USP46-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119384|ref|XR_110055.1| PREDICTED: Homo sapiens USP46 antisense RNA 1, transcript variant 1 (USP46-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_110055.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004492	0.9047472	A	0.8965411	A	1.00570424266512	0	lncRNA	TCONS_00010637	NA	NA	NA	NA	XLOC_004308	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004308), lincRNA [TCONS_00010637]"	chr5:17404806-17430079	hs|5p15.1	Agilent_HUMAN_G3V2	TCONS_00010637	TCONS_00010637	chr5	 17404806	 17430079	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50877_PI429285431	1.134598	A	0.9200631	A	1.16032978376946	0	lncRNA	54520-2_{3001..4691}	hg19_lincRNAsTranscripts_TCONS_l2_00004830 range=chr11:124981873-124996846 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004830 range=chr11:124981873-124996846 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	124984873	124986563	+	NA	NA	NA	NA	TMEM218	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60chr11:124971873-124973205"	NA	inter
CUST_50709_PI429285431	7.0740743	P	6.995379	P	1.05606255932916	0	lncRNA	54380-1_{1..1364}	hg19_lincRNAsTranscripts_TCONS_l2_00003650 range=chr10:81629875-81633837 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003650 range=chr10:81629875-81633837 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 81629875	 81631238	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008015	0.9040823	A	0.8957413	A	1.00579828599487	0	lncRNA	ENST00000433569	NA	NA	NA	NA	XLOC_010694	NA	ENST00000433569	NA	NA	"BROAD Institute lincRNA (XLOC_010694), lincRNA [TCONS_00021688]"	chr13:95353537-95352951	hs|13q32.1	Agilent_HUMAN_G3V2	ENST00000433569	ENST00000433569	chr13	 95352951	 95353537	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1096_PI429285431	4.572328	P	4.6756806	P	0.930867284621417	0	lncRNA	1085-1_{1..840}	"transcript_id ""ENST00000594471.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594471.1"" | genecode_v17"	chr2	145425552	145426391	+	ENSG00000226674.3	ENST00000594471.1	AC074093.1	AC074093.1-021	NA	NA	NA	inter
CUST_43610_PI429285431	5.8369994	P	6.640663	P	0.572892517464381	0	lncRNA	48373-1_{1..3000}	"gi|397138908|ref|XR_108352.2| PREDICTED: Homo sapiens FLG antisense RNA 1 (FLG-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397138908|ref|XR_108352.2| PREDICTED: Homo sapiens FLG antisense RNA 1 (FLG-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_108352.2	NA	NA	NA	NA	NA	Unknown
CUST_44819_PI429285431	0.91167855	A	0.90601873	A	1.00393079365929	0	lncRNA	49353-1_{1..1903}	"gi|337298945|ref|NR_038987.1| Homo sapiens uncharacterized LOC100507489 (LOC100507489), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|337298945|ref|NR_038987.1| Homo sapiens uncharacterized LOC100507489 (LOC100507489), non-coding RNA"	Chr6	143287558	143289460	-	100507489	NR_038987.1	NA	NA	NA	NA	NA	inter
CUST_45996_PI429285431	3.5888116	P	3.6403613	P	0.96489930598829	0	lncRNA	50284-1_{1..1538}	"gi|195927031|ref|NR_024061.1| Homo sapiens loss of heterozygosity, 12, chromosomal region 2 (non-protein coding) (LOH12CR2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|195927031|ref|NR_024061.1| Homo sapiens loss of heterozygosity, 12, chromosomal region 2 (non-protein coding) (LOH12CR2), non-coding RNA"	Chr12	 12508342	 12509879	-	503693	NR_024061.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-26.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40"	NA	inter
CUST_23953_PI429285431	0.9075137	A	0.89246154	A	1.01048797957153	0	lncRNA	25509-1_{1..499}	lnc-CCDC125-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CCDC125-5:1	chr5	 68257696	 68258194	-	lnc-CCDC125-5	lnc-CCDC125-5:1	ENSG00000249335.1	CTC-340D7.1	NA	NA	NA	inter
CUST_314_PI429285431	9.534599	P	9.236041	P	1.22991447682902	0	lncRNA	305-1_{1..592}	"transcript_id ""ENST00000414039.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414039.1"" | genecode_v17"	chr1	 94784035	 94784626	-	ENSG00000236098.1	ENST00000414039.1	RP11-148B18.4	RP11-148B18.4-001	NA	NA	NA	inter
LNCA_21_P0012999	2.517808	A	1.7690393	A	1.68035807955628	0	lncRNA	ENST00000506070	NA	NA	NA	NA	XLOC_l2_012148	NA	ENST00000506070	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012148), lincRNA [TCONS_l2_00023832]"	chr5:95305978-95300949	hs|5q15	Agilent_HUMAN_G3V2	ENST00000506070	ENST00000506070	chr5	 95300949	 95305978	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37293_PI429285431	2.4465628	A	2.1031325	A	1.26876976773054	0	lncRNA	38402-1_{1..1781}	n345736|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1285|NULL|-1.2765100|-0.2272769	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345736|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1285|NULL|-1.2765100|-0.2272769	chr20	 46421037	 46422817	+	NA	NA	NA	NA	SULF2	NA	chr20:46411037-46415360	inter
LNCA_21_P0006466	0.9050379	A	0.8960218	A	1.00626905306529	0	lncRNA	ENST00000455153	NA	BC007100	NA	NA	XLOC_008248	NA	ENST00000455153	NA	NA	"BROAD Institute lincRNA (XLOC_008248), lincRNA [TCONS_00017097]"	chrX:139763344-139763285	hs|Xq27.1	Agilent_HUMAN_G3V2	ENST00000455153	ENST00000455153	chrX	139763285	139763344	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18527_PI429285431	6.189982	P	6.486927	P	0.813974215695235	0	lncRNA	20241-1_{1..2120}	lnc-ZNF180-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF180-1:2	chr19	 45033481	 45035600	-	lnc-ZNF180-1	lnc-ZNF180-1:2	ENSG00000176395	CEACAM20	CEACAM20	NA	chr19:45023481-45033548	inner
CUST_34551_PI429285431	6.5296216	P	7.1011896	P	0.672885062518976	0	lncRNA	36011-2_{3001..3416}	n341432|X05562|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3902|NULL|7.1642100|-0.0428822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341432|X05562|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3902|NULL|7.1642100|-0.0428822	chr13	110962630	110963045	+	NA	NA	NA	NA	COL4A2	NA	chr13:110959631-111148104	inner
CUST_6600_PI429285431	5.6345367	P	4.9897475	P	1.56351081651763	0	lncRNA	6548-1_{1..535}	"transcript_id ""ENST00000591797.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591797.1"" | genecode_v17"	chr19	 56989559	 56990093	+	ENSG00000166770.6	ENST00000591797.1	AC004696.2	AC004696.2-005	ZNF667	NA	chr19:56979559-56988770	inter
CUST_9402_PI429285431	0.89577264	A	0.891533	A	1.00294301670814	0	lncRNA	10905-1_{1..1159}	lnc-DYSF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DYSF-1:1	chr2	 71969834	 71970992	+	lnc-DYSF-1	lnc-DYSF-1:1	XLOC_001527	linc-SPR-2	NA	NA	NA	inter
CUST_10428_PI429285431	0.91827357	A	1.363275	A	0.734583588519197	0	lncRNA	11956-1_{1..1238}	lnc-DUSP10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DUSP10-2:1	chr1	221736650	221737887	-	lnc-DUSP10-2	lnc-DUSP10-2:1	XLOC_001212	linc-RAB3GAP2-3	NA	NA	NA	inter
CUST_6167_PI429285431	6.185039	P	6.676902	P	0.711106229562595	0	lncRNA	6092-1_{1..3000}	"transcript_id ""ENST00000585627.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000585627.1"" | genecode_v17"	chr18	 39766633	 39769632	+	ENSG00000267586.2	ENST00000585627.1	RP11-21F16.1	RP11-21F16.1-002	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30"	NA	inter
CUST_32752_PI429285431	1.0773922	A	1.508871	A	0.741501337454219	0	lncRNA	34389-1_{1..1488}	n339383|CR623108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1815|NULL|-0.9948750|-0.3107767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339383|CR623108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1815|NULL|-0.9948750|-0.3107767	chr3	 60923446	 60924933	-	NA	NA	NA	NA	FHIT	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70chr3:60913446-60934934"	NA	inner
CUST_39980_PI429285431	3.231597	P	3.273674	P	0.971255655978041	0	lncRNA	40850-1_{1..3000}	n407067|NR_024561|lncRNA|Homosapiens||RefGeneNoncode|NR_024561||1.9103700|-0.1019965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407067|NR_024561|lncRNA|Homosapiens||RefGeneNoncode|NR_024561||1.9103700|-0.1019965	chr19	 35563704	 35566703	-	NA	NA	NA	NA	HPN	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr19:35553704-35557477"	NA	inter
CUST_18726_PI429285431	5.441619	P	5.618824	P	0.8844147553357	0	lncRNA	20424-1_{1..557}	lnc-AC018816.3.1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC018816.3.1-3:3	chr3	  5021480	  5022036	-	lnc-AC018816.3.1-3	lnc-AC018816.3.1-3:3	ENSG00000235831	AC018816.4	BHLHE40	NA	chr3:5021097-5026866	inner
CUST_12532_PI429285431	0.9183904	A	0.91996515	A	0.998909061983438	0	lncRNA	14143-1_{1..1331}	lnc-FPGT-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-FPGT-5:2	chr1	 73256748	 73258078	+	lnc-FPGT-5	lnc-FPGT-5:2	XLOC_000254	linc-FPGT-4	NA	NA	NA	inter
CUST_43987_PI429285431	2.9943776	A	2.6126552	A	1.30289642496434	0	lncRNA	48686-1_{1..1804}	"gi|344030206|ref|NR_024526.2| Homo sapiens ADP-ribosylation-like factor 6 interacting protein 6 (ARL6IP6), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|344030206|ref|NR_024526.2| Homo sapiens ADP-ribosylation-like factor 6 interacting protein 6 (ARL6IP6), transcript variant 2, non-coding RNA"	Chr2	153574407	153576210	+	151188	NR_024526.2	NA	NA	NA	NA	NA	inter
CUST_3243_PI429285431	3.9284327	P	3.7281382	P	1.14893286484587	0	lncRNA	3222-1_{1..546}	"transcript_id ""ENST00000519566.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519566.1"" | genecode_v17"	chr8	101349823	101350368	+	ENSG00000253217.1	ENST00000519566.1	KB-1991G8.1	KB-1991G8.1-001	NA	NA	NA	inter
CUST_22549_PI429285431	0.9161148	A	0.9056088	A	1.00730878400904	0	lncRNA	24136-1_{1..251}	lnc-WDPCP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDPCP-2:1	chr2	 63085508	 63085758	-	lnc-WDPCP-2	lnc-WDPCP-2:1	ENSG00000226605.1	AC007098.1	EHBP1	"hg19_refFlat_EHBP1:range=chr2:62934327-632726355'pad=0,hg19_refFlat_EHBP1:range=chr2:62934327-632726355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80chr2:63075508-63095573"	NA	inner
CUST_9906_PI429285431	3.9316998	P	4.231518	P	0.812354758106959	0	lncRNA	11430-1_{1..651}	lnc-BOD1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BOD1-2:4	chr5	173217812	173218462	-	lnc-BOD1-2	lnc-BOD1-2:4	XLOC_005088	linc-BOD1-2	NA	NA	NA	inter
CUST_25520_PI429285431	2.2161345	A	1.422158	A	1.73384688423899	0	lncRNA	27051-1_{1..568}	lnc-ZNF236-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF236-1:1	chr18	 74689018	 74689585	+	lnc-ZNF236-1	lnc-ZNF236-1:1	ENSG00000266844.1	RP11-862L9.3	MBP	NA	chr18:74690789-74699221	inter
CUST_637_PI429285431	1.0821939	A	0.900648	A	1.1340984620345	0	lncRNA	629-1_{1..648}	"transcript_id ""ENST00000589936.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589936.1"" | genecode_v17"	chr2	   309221	   309868	-	ENSG00000235779.2	ENST00000589936.1	AC079779.5	AC079779.5-025	NA	NA	NA	inter
CUST_50305_PI429285431	1.0696014	A	0.8999727	A	1.12476897065227	0	lncRNA	54024-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00029507 range=chr9:99912380-99925204 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029507 range=chr9:99912380-99925204 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 99912380	 99915379	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34219_PI429285431	0.8955301	A	0.8925012	A	1.00210167893283	0	lncRNA	35732-1_{1..1413}	n341080|BC041900|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3546|NULL|-1.1006700|-0.3319977	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341080|BC041900|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3546|NULL|-1.1006700|-0.3319977	chr11	 81590895	 81592307	-	NA	NA	NA	NA	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
CUST_38556_PI429285431	0.9042359	A	0.90463215	A	0.99972537814519	0	lncRNA	39566-1_{1..3000}	n383430|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002nqa.2||-0.3525620|-0.2658894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n383430|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002nqa.2||-0.3525620|-0.2658894	chr19	 21666175	 21669174	+	NA	NA	NA	NA	ZNF429	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40chr19:21688437-21692695"	NA	inter
CUST_44902_PI429285431	2.3573928	A	1.8948715	A	1.3779478608459	0	lncRNA	49421-2_{3001..5784}	"gi|210147393|ref|NR_024278.1| Homo sapiens uncharacterized LOC646762 (LOC646762), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|210147393|ref|NR_024278.1| Homo sapiens uncharacterized LOC646762 (LOC646762), non-coding RNA"	Chr7	 29688538	 29691321	-	646762	NR_024278.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30"	NA	inter
CUST_29521_PI429285431	5.5273066	P	4.932641	P	1.51012251608562	0	lncRNA	31279-1_{1..421}	n332977|AF107833|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000069563|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000069563|1.9037800|-0.0694258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332977|AF107833|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000069563|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000069563|1.9037800|-0.0694258	chr8	 97797355	 97797775	+	NA	NA	NA	NA	PGCP	NA	chr8:97787355-97857419	inner
CUST_17254_PI429285431	4.7522354	P	4.88209	P	0.913923554093998	0	lncRNA	18972-1_{1..753}	lnc-SMC1B-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMC1B-4:2	chr22	 46033072	 46033824	-	lnc-SMC1B-4	lnc-SMC1B-4:2	XLOC_014400	linc-SMC1B-6	NA	NA	NA	inter
LNCA_21_P0012753	6.2023654	P	6.4981422	P	0.814633585650651	0	lncRNA	ENST00000513425	NA	NA	NA	NA	XLOC_l2_010888	NA	ENST00000513425	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010888), lincRNA [TCONS_l2_00021752]"	chr4:152183984-152184043	hs|4q31.3	Agilent_HUMAN_G3V2	ENST00000513425	ENST00000513425	chr4	152183984	152184043	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6040_PI429285431	1.0249727	A	1.0415202	A	0.988595675021839	0	lncRNA	5966-1_{1..548}	"transcript_id ""ENST00000334697.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000334697.3"" | genecode_v17"	chr18	  1269822	  1270369	-	ENSG00000132204.9	ENST00000334697.3	LINC00470	LINC00470-202	NA	NA	NA	inter
CUST_44103_PI429285431	4.25983	P	4.630105	P	0.773635015909808	0	lncRNA	48768-1_{1..444}	"gi|387598080|ref|NR_046555.1| Homo sapiens CNTN4 antisense RNA 2 (CNTN4-AS2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|387598080|ref|NR_046555.1| Homo sapiens CNTN4 antisense RNA 2 (CNTN4-AS2), non-coding RNA"	Chr3	  2152093	  2152536	-	100873976	NR_046555.1	NA	NA	NA	NA	NA	inter
CUST_40780_PI429285431	7.948786	P	8.130683	P	0.881543092688807	0	lncRNA	41495-1_{1..2463}	n410508|NR_037650|lncRNA|Homosapiens||RefGeneNoncode|NR_037650||6.0093100|-0.1422554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410508|NR_037650|lncRNA|Homosapiens||RefGeneNoncode|NR_037650||6.0093100|-0.1422554	chr11	 64781584	 64784046	+	NA	NA	NA	NA	SNX15	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00chr11:64794880-64808044"	NA	inner
CUST_21932_PI429285431	0.9187788	A	0.9182909	A	1.0003382437009	0	lncRNA	23540-1_{1..610}	lnc-DEXI-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DEXI-2:1	chr16	 11164753	 11165362	-	lnc-DEXI-2	lnc-DEXI-2:1	ENSG00000262020.1	RP11-66H6.3	CLEC16A	NA	chr16:11154753-11174959	inner
CUST_46774_PI429285431	3.754956	P	4.0131865	P	0.836112803143935	0	lncRNA	50922-2_{3001..6000}	"gi|307775431|ref|NR_036647.1| Homo sapiens coiled-coil domain containing 144B (pseudogene) (CCDC144B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|307775431|ref|NR_036647.1| Homo sapiens coiled-coil domain containing 144B (pseudogene) (CCDC144B), non-coding RNA"	NA	NA	NA	NA	NA	NR_036647.1	NA	NA	NA	NA	NA	Unknown
CUST_13256_PI429285431	3.1525023	P	3.0493565	A	1.07411301691926	0	lncRNA	14886-1_{1..202}	lnc-AGBL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AGBL1-2:1	chr15	 86668691	 86668892	+	lnc-AGBL1-2	lnc-AGBL1-2:1	XLOC_011341	linc-AGBL1	NA	NA	NA	inter
LNCA_21_P0001373	0.92274797	A	0.91133213	A	1.00794424670377	0	lncRNA	TCONS_00001140	NA	NA	NA	NA	XLOC_000389	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000389), lincRNA [TCONS_00001140]"	chr1:148354610-148354669	hs|1q21.2	Agilent_HUMAN_G3V2	TCONS_00001140	TCONS_00001140	chr1	148354610	148354669	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39893_PI429285431	11.4925785	P	11.315574	P	1.13053409343843	0	lncRNA	40778-2_{3001..3401}	n406590|NR_024108|lncRNA|Homosapiens||RefGeneNoncode|NR_024108||10.9022000|-0.1302922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406590|NR_024108|lncRNA|Homosapiens||RefGeneNoncode|NR_024108||10.9022000|-0.1302922	chr21	 45722924	 45723324	+	NA	NA	NA	NA	PFKL	NA	chr21:45719925-45747261	inner
CUST_21796_PI429285431	2.1293974	A	0.8831432	A	2.37224694719913	0	lncRNA	23406-1_{1..1129}	lnc-NME7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NME7-1:1	chr1	169056193	169057321	-	lnc-NME7-1	lnc-NME7-1:1	ENSG00000203601.3	RP11-375F2.2	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40"	NA	inter
CUST_25536_PI429285431	0.8976691	A	0.8935724	A	1.00284365158315	0	lncRNA	27066-1_{1..221}	lnc-PTPLA-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPLA-3:1	chr10	 18154342	 18154562	-	lnc-PTPLA-3	lnc-PTPLA-3:1	ENSG00000235637.1	RP11-457D2.3	MRC1	NA	chr10:18144342-18164400	inner
CUST_12383_PI429285431	5.0953836	P	5.5215373	P	0.744243334114583	0	lncRNA	13996-1_{1..1035}	lnc-PRKAA2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRKAA2-7:1	chr1	 56345066	 56346100	+	lnc-PRKAA2-7	lnc-PRKAA2-7:1	XLOC_000208	linc-PRKAA2-7	NA	"hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0,hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20"	NA	inter
CUST_46517_PI429285431	1.9154172	A	2.3993447	A	0.715028424723406	0	lncRNA	50708-1_{1..2375}	"gi|315113871|ref|NR_037654.1| Homo sapiens 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) (MTHFS), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|315113871|ref|NR_037654.1| Homo sapiens 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) (MTHFS), transcript variant 3, non-coding RNA"	Chr15	 80135889	 80138263	-	10588	NR_037654.1	NA	NA	NA	NA	NA	inter
CUST_17664_PI429285431	1.351002	A	0.92938244	A	1.33943034684712	0	lncRNA	19392-2_{3001..3728}	lnc-RAD23B-11:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAD23B-11:1	chr9	110772546	110773273	+	lnc-RAD23B-11	lnc-RAD23B-11:1	XLOC_007512	linc-ACTL7A-4	NA	NA	NA	inter
CUST_44930_PI429285431	0.92727965	A	1.153893	A	0.854638757965206	0	lncRNA	49443-2_{3001..4651}	"gi|224177506|ref|NR_026999.1| Homo sapiens long intergenic non-protein coding RNA 265 (LINC00265), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224177506|ref|NR_026999.1| Homo sapiens long intergenic non-protein coding RNA 265 (LINC00265), non-coding RNA"	Chr7	 39776167	 39777817	+	349114	NR_026999.1	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	inter
CUST_27840_PI429285431	4.306097	P	4.058042	P	1.18760494038629	0	lncRNA	29429-1_{1..748}	n325071|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077923|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077923|-1.3260900|-0.5159615	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325071|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077923|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077923|-1.3260900|-0.5159615	chr20	  7276113	  7276860	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51855_PI429285431	12.715722	P	12.381257	P	1.26090973424728	0	lncRNA	55410-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00013179 range=chr19:50993628-51003656 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013179 range=chr19:50993628-51003656 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 50993628	 50996627	-	NA	NA	NA	NA	JOSD2	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10chr19:51009259-51013656"	NA	inter
CUST_28451_PI429285431	0.9192792	A	0.9220494	A	0.998081686001189	0	lncRNA	30111-1_{1..1045}	n325778|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044349|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044349|-1.1469100|-0.4316456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325778|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044349|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044349|-1.1469100|-0.4316456	chr13	 29814596	 29815640	-	NA	NA	NA	NA	MTUS2	NA	chr13:29804596-29847898	inner
CUST_33760_PI429285431	0.9092327	A	0.9101558	A	0.999360360494249	0	lncRNA	35314-1_{1..2109}	n340539|BC041393|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3001|NULL|-1.1694700|-0.3514968	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n340539|BC041393|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3001|NULL|-1.1694700|-0.3514968	chr5	 86042634	 86044742	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34454_PI429285431	0.899978	A	1.2149731	A	0.803853720964322	0	lncRNA	35930-1_{1..1815}	n341330|AK055985|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3799|NULL|-1.2776300|-0.4300058	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341330|AK055985|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3799|NULL|-1.2776300|-0.4300058	chr7	135069765	135071579	-	NA	NA	NA	NA	CNOT4	NA	chr7:135059765-135081580	inner
CUST_3950_PI429285431	1.3021885	A	1.0477457	A	1.19287493997274	0	lncRNA	3920-1_{1..529}	"transcript_id ""ENST00000527054.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527054.1"" | genecode_v17"	chr11	 58265457	 58265985	-	ENSG00000255299.1	ENST00000527054.1	RP11-655C2.3	RP11-655C2.3-001	OR5B21	NA	chr11:58274649-58275578	inter
CUST_20838_PI429285431	3.4378183	P	3.8881824	P	0.731858122051793	0	lncRNA	22469-1_{1..1127}	lnc-UQCRFS1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UQCRFS1-1:3	chr19	 30016331	 30017457	-	lnc-UQCRFS1-1	lnc-UQCRFS1-1:3	ENSG00000264515.1	CTC-525D6.1	VSTM2B	"hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00chr19:30017491-30026641"	NA	inter
CUST_230_PI429201921	3.2279575	P	3.2507293	A	0.984339708821968	0	lncRNA	178-2_{3001..6000}	TC0X002112.hg.1	TCONS_l2_00030821-XLOC_l2_015752 // Broad TUCP // linc-CXCR3 chrX:-:70882844-70885603 // chrX // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00030522-XLOC_l2_015752 // Broad TUCP // linc-CXCR3 chrX:-:70882855-70888878 // chrX // 100 // 100 // 0 // --- // 0/// TCONS_l2_00030822-XLOC_l2_015752 // Broad TUCP // linc-CXCR3 chrX:-:70882847-70884121 // chrX // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chrX:-:70882844-70885603	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00030821-XLOC_l2_015752	linc-CXCR3	chrX	 70882844	 70885603	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012772	2.517283	A	2.8946369	A	0.769848303597292	0	lncRNA	ENST00000514877	NA	NA	NA	NA	XLOC_l2_011095	NA	ENST00000514877	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011095), lincRNA [TCONS_l2_00021856]"	chr4:34125190-34125131	hs|4p15.1	Agilent_HUMAN_G3V2	ENST00000514877	ENST00000514877	chr4	 34125131	 34125190	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002485	0.9148768	A	0.923375	A	0.994126811630436	0	lncRNA	TCONS_00004369	NA	NA	NA	NA	XLOC_002251	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002251), lincRNA [TCONS_00004369]"	chr2:107999151-107999092	hs|2q12.3	Agilent_HUMAN_G3V2	TCONS_00004369	TCONS_00004369	chr2	107999092	107999151	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28144_PI429285431	2.2191076	A	2.1173248	A	1.0730987175374	0	lncRNA	29770-1_{1..264}	n325421|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323611|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323611|-0.9463560|-0.5303470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325421|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323611|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323611|-0.9463560|-0.5303470	chr2	 14674002	 14674265	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46380_PI429285431	7.8241568	P	7.6885962	P	1.09851959174918	0	lncRNA	50597-1_{1..1341}	"gi|115529443|ref|NR_001459.2| Homo sapiens small nucleolar RNA host gene 10 (non-protein coding) (SNHG10), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|115529443|ref|NR_001459.2| Homo sapiens small nucleolar RNA host gene 10 (non-protein coding) (SNHG10), non-coding RNA"	Chr14	 95999249	 96000589	-	283596	NR_001459.2	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-59.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30"	NA	inter
CUST_47292_PI429285431	1.5446286	A	1.938066	A	0.761313517864168	0	lncRNA	51361-1_{1..3000}	"gi|395455056|ref|NR_073026.1| Homo sapiens zinc finger protein 334 (ZNF334), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|395455056|ref|NR_073026.1| Homo sapiens zinc finger protein 334 (ZNF334), transcript variant 4, non-coding RNA"	Chr20	 45128269	 45131268	-	55713	NR_073026.1	NA	NA	NA	NA	NA	inter
CUST_44867_PI429285431	3.909465	P	4.261905	P	0.783258268683319	0	lncRNA	49391-1_{1..534}	"gi|310119902|ref|XR_108779.1| PREDICTED: Homo sapiens uncharacterized LOC100288594 (LOC100288594), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119902|ref|XR_108779.1| PREDICTED: Homo sapiens uncharacterized LOC100288594 (LOC100288594), misc_RNA"	NA	NA	NA	NA	NA	XR_108779.1	NA	NA	NA	NA	NA	Unknown
CUST_49701_PI429285431	0.9150439	A	0.91491884	A	1.00008668874365	0	lncRNA	53478-1_{1..1342}	hg19_lincRNAsTranscripts_TCONS_l2_00026399 range=chr7:17474966-17497451 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026399 range=chr7:17474966-17497451 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 17474966	 17476307	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6770_PI429285431	4.0528913	P	4.8021507	P	0.594908872506039	0	lncRNA	6717-1_{1..522}	"transcript_id ""ENST00000419952.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419952.1"" | genecode_v17"	chr21	 17566699	 17567220	+	ENSG00000215386.6	ENST00000419952.1	LINC00478	LINC00478-005	NA	NA	NA	inter
CUST_13743_PI429285431	1.6976178	A	3.1855052	P	0.356534255173508	0	lncRNA	15386-1_{1..757}	lnc-C1D-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-C1D-3:4	chr2	 67440771	 67441527	-	lnc-C1D-3	lnc-C1D-3:4	XLOC_002142	linc-SPRED2-11	NA	NA	NA	inter
CUST_31270_PI429285431	2.216566	A	0.9028761	A	2.48576497777522	0	lncRNA	33058-2_{3001..3226}	n337725|AK124653|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|107|NULL|-1.0725200|-0.3373205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337725|AK124653|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|107|NULL|-1.0725200|-0.3373205	chrX	 54222295	 54222520	-	NA	NA	NA	NA	FAM120C	NA	chrX:54209295-54209714	inner
CUST_3934_PI429285431	5.3219295	P	5.5523996	P	0.852357107236603	0	lncRNA	3904-1_{1..872}	"transcript_id ""ENST00000524565.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524565.1"" | genecode_v17"	chr11	 45377052	 45377923	+	ENSG00000254427.1	ENST00000524565.1	RP11-430H10.1	RP11-430H10.1-003	NA	NA	NA	inter
LNCA_19_P00800629	1.6672941	A	0.9237049	A	1.67433614851795	0	lncRNA	ENST00000450063	NA	NA	NA	NA	XLOC_l2_013972	NA	ENST00000450063	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013972), lincRNA [TCONS_l2_00026856]"	chr7:116211083-116211024	hs|7q31.2	Agilent_HUMAN_G3V2	ENST00000450063	ENST00000450063	chr7	116211024	116211083	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42862_PI429285431	8.78263	P	8.896307	P	0.924229471822951	0	lncRNA	45913-1_{1..129}	ENST00000384504 ncrna:snoRNA chromosome:GRCh37:18:51748654:51748782:-1 gene:ENSG00000207233 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384504 ncrna:snoRNA chromosome:GRCh37:18:51748654:51748782:-1 gene:ENSG00000207233 gene_biotype:snoRNA transcript_biotype:snoRNA	chr18	 51748654	 51748782	-	ENSG00000207233	ENST00000384504	NA	NA	MBD2	NA	chr18:51738654-51751158	inner
CUST_221_PI429201921	1.3703923	A	0.91672236	A	1.36951962520545	0	lncRNA	174-1_{1..3000}	TC09002089.hg.1	 TCONS_l2_00028914-XLOC_l2_014913 // Broad TUCP // linc-CENPP-5 chr9:+:94897998-94900914 // chr9 // 100 // 100 // 0 // --- // 0///TCONS_l2_00029800-XLOC_l2_014913 // Broad TUCP // linc-CENPP-5 chr9:+:94895115-94900911 // chr9 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr9:+:94895115-94900911	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00029800-XLOC_l2_014913	linc-CENPP-5	chr9	 94895115	 94900911	+	NA	NA	NA	NA	ID3	NA	chr1:23884409-23886322	Unknown
CUST_49624_PI429285431	3.2630932	P	3.1936593	P	1.04930486544597	0	lncRNA	53408-3_{6001..6585}	hg19_lincRNAsTranscripts_TCONS_l2_00025640 range=chr7:6677494-6697399 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025640 range=chr7:6677494-6697399 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  6683494	  6684078	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_16452_PI429285431	3.7900736	P	3.668406	P	1.08799173718463	0	lncRNA	18150-2_{3001..4047}	lnc-BTBD17-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTBD17-4:3	chr17	 72111785	 72112831	-	lnc-BTBD17-4	lnc-BTBD17-4:3	XLOC_012572	linc-SDK2-2	NA	NA	NA	inter
CUST_37372_PI429285431	2.9256406	A	2.533194	A	1.31261752497148	0	lncRNA	38477-1_{1..3000}	n345822|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1371|NULL|-1.3128200|-0.2814902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345822|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1371|NULL|-1.3128200|-0.2814902	chr12	 65174886	 65177885	+	NA	NA	NA	NA	TBC1D30	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30chr12:65218352-65274802"	NA	inner
LNCA_21_P0009368	4.18674	P	4.9891567	P	0.573387874033399	0	lncRNA	XR_109440	XR_109440	XR_109440	NA	NA	LOC100507520	uncharacterized LOC100507520	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507520, transcript variant 2 (LOC100507520), miscRNA [XR_109440]"	chr17:79362104-79362045	hs|17q25.3	Agilent_HUMAN_G3V2	XR_109440	XR_109440	chr17	 79362045	 79362104	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4810_PI429285431	3.0621765	P	2.9762044	A	1.06140268249039	0	lncRNA	4754-1_{1..269}	"transcript_id ""ENST00000603474.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603474.1"" | genecode_v17"	chr14	 50474036	 50474304	-	ENSG00000258929.2	ENST00000603474.1	RP11-58E21.3	RP11-58E21.3-005	C14orf182	NA	chr14:50464036-50474238	inner
CUST_10100_PI429285431	0.91373783	A	0.92743933	A	0.990547799463287	0	lncRNA	11623-3_{6001..6782}	lnc-BATF3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BATF3-2:2	chr1	212816445	212817226	-	lnc-BATF3-2	lnc-BATF3-2:2	XLOC_001195	linc-TMEM206-2	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10"	NA	inter
CUST_61_PI429285431	3.9049757	P	4.668269	P	0.589149917511636	0	lncRNA	60-1_{1..1588}	"transcript_id ""ENST00000304488.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000304488.4"" | genecode_v17"	chr16	 86369374	 86370961	-	ENSG00000168367.5	ENST00000304488.4	RP11-158I3.2	RP11-158I3.2-201	NA	NA	NA	inter
CUST_12467_PI429285431	1.622593	A	2.6377263	A	0.49478260990463	0	lncRNA	14079-1_{1..378}	lnc-GJA10-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GJA10-5:1	chr6	 91344242	 91344619	+	lnc-GJA10-5	lnc-GJA10-5:1	XLOC_005386	linc-MANEA-8	NA	NA	NA	inter
LNCA_21_P0002307	0.9174073	A	0.91326094	A	1.00287817174954	0	lncRNA	TCONS_00003921	NA	NA	NA	NA	XLOC_001726	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001726), lincRNA [TCONS_00003921]"	chr2:160763185-160763244	hs|2q24.2	Agilent_HUMAN_G3V2	TCONS_00003921	TCONS_00003921	chr2	160763185	160763244	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49060_PI429285431	5.9588647	P	5.8144464	P	1.10528490848216	0	lncRNA	52886-2_{3001..3393}	hg19_lincRNAsTranscripts_TCONS_l2_00020964 range=chr4:189659523-189663160 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020964 range=chr4:189659523-189663160 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	189662523	189662915	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008442	4.3348536	P	3.8909216	P	1.36030673418602	0	lncRNA	TCONS_00022754	NA	NA	NA	NA	XLOC_011036	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011036), lincRNA [TCONS_00022754]"	chr14:56045497-56045438	hs|14q22.3	Agilent_HUMAN_G3V2	TCONS_00022754	TCONS_00022754	chr14	 56045438	 56045497	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23703_PI429285431	0.9118719	A	0.91106737	A	1.00055781322114	0	lncRNA	25268-1_{1..363}	lnc-KIAA0913-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0913-2:1	chr10	 75606093	 75606455	+	lnc-KIAA0913-2	lnc-KIAA0913-2:1	ENSG00000229990.1	RP11-574K11.8	CAMK2G	NA	chr10:75596093-75616370	inner
CUST_2553_PI429285431	1.0969411	A	1.5505869	A	0.730195255553867	0	lncRNA	2541-1_{1..667}	"transcript_id ""ENST00000436803.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436803.1"" | genecode_v17"	chr6	 72054289	 72054955	-	ENSG00000233237.2	ENST00000436803.1	LINC00472	LINC00472-003	NA	NA	NA	inter
CUST_30364_PI429285431	1.6070417	A	0.9036315	A	1.62834929120923	0	lncRNA	32140-1_{1..454}	n335462|AY764267|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257663|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257663|2.0538300|-0.1951501	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335462|AY764267|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257663|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257663|2.0538300|-0.1951501	chr1	107937920	107938373	+	NA	NA	NA	NA	NTNG1	NA	chr1:107927920-108024475	inner
CUST_4099_PI429285431	3.0305178	A	3.2954032	A	0.832264842766405	0	lncRNA	4060-1_{1..479}	"transcript_id ""ENST00000526934.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526934.1"" | genecode_v17"	chr11	119859374	119859852	-	ENSG00000254863.1	ENST00000526934.1	RP11-831A10.2	RP11-831A10.2-001	NA	NA	NA	inter
CUST_31801_PI429285431	4.5754547	P	5.485053	P	0.532333291996648	0	lncRNA	33539-1_{1..3000}	n338343|AK055795|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|737|NULL|0.0869479|-0.2037193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338343|AK055795|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|737|NULL|0.0869479|-0.2037193	chr1	165880632	165883631	+	NA	NA	NA	NA	FAM78B	NA	chr1:166039256-166069452	inner
CUST_29199_PI429285431	5.8965006	P	6.059219	P	0.893340206630815	0	lncRNA	30946-1_{1..363}	n326716|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099317|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099317|-1.0092100|-0.1098860	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326716|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099317|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099317|-1.0092100|-0.1098860	chr1	  5570014	  5570376	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_882_PI429285431	2.3187401	A	2.46246	A	0.905182187421005	0	lncRNA	872-1_{1..900}	"transcript_id ""ENST00000446139.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446139.1"" | genecode_v17"	chr2	 56190326	 56191225	-	ENSG00000226702.1	ENST00000446139.1	AC011306.2	AC011306.2-001	NA	NA	NA	inter
CUST_25790_PI429285431	1.4587291	A	0.9561485	A	1.41674548032895	0	lncRNA	27311-2_{3001..5391}	lnc-AEBP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AEBP2-3:1	chr12	 19305410	 19307800	+	lnc-AEBP2-3	lnc-AEBP2-3:1	ENSG00000253284.2	RP11-282K24.3	PLEKHA5	"hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60chr12:19292410-19317593"	NA	inner
CUST_8799_PI429285431	2.2131968	A	2.2844443	A	0.951814606956643	0	lncRNA	10340-1_{1..1771}	lnc-MYL12A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYL12A-1:1	chr18	  3245955	  3247725	+	lnc-MYL12A-1	lnc-MYL12A-1:1	ENSG00000251082	ENSG00000265399.1	MYL12A	"hg19_refFlat_MYOM1:range=chr18:3067260-32152215'pad=0,hg19_refFlat_MYOM1:range=chr18:3067260-32152215'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20chr18:3247528-3256234"	NA	inter
CUST_18110_PI429285431	1.6949567	A	3.1096473	P	0.375090180438011	0	lncRNA	19845-1_{1..521}	lnc-TRMT61B-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRMT61B-1:6	chr2	 28949903	 28950423	-	lnc-TRMT61B-1	lnc-TRMT61B-1:6	XLOC_002035	linc-RBKS-1	NA	NA	NA	inter
CUST_51773_PI429285431	7.4448457	P	8.049387	P	0.657680454135573	0	lncRNA	55324-1_{1..760}	hg19_lincRNAsTranscripts_TCONS_l2_00012273 range=chr19:7981885-7983975 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012273 range=chr19:7981885-7983975 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	  7981885	  7982644	+	NA	NA	NA	NA	TIMM44	NA	chr19:7991603-7993975	inner
CUST_23613_PI429285431	0.8949222	A	0.8915861	A	1.00231508398718	0	lncRNA	25180-1_{1..1053}	lnc-WDR72-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR72-1:1	chr15	 54268965	 54270017	-	lnc-WDR72-1	lnc-WDR72-1:1	ENSG00000259669.1	RP11-643A5.2	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70"	NA	inter
CUST_51148_PI429285431	5.0235524	P	5.0562706	P	0.977576696719964	0	lncRNA	54771-1_{1..785}	hg19_lincRNAsTranscripts_TCONS_00090092_MEG3 range=chr14:101297758-101327368 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00090092_MEG3 range=chr14:101297758-101327368 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	101297758	101298542	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45574_PI429285431	0.8966418	A	0.9002055	A	0.997532879748612	0	lncRNA	49968-3_{6001..8688}	"gi|223278375|ref|NR_026777.1| Homo sapiens zinc finger protein 37B, pseudogene (ZNF37BP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|223278375|ref|NR_026777.1| Homo sapiens zinc finger protein 37B, pseudogene (ZNF37BP), non-coding RNA"	NA	NA	NA	NA	NA	NR_026777.1	NA	NA	NA	NA	NA	Unknown
CUST_36326_PI429285431	2.3952293	A	1.136164	A	2.3934062555865	0	lncRNA	37557-1_{1..2837}	n344852|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_401|NULL|-1.3138500|-0.3754493	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344852|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_401|NULL|-1.3138500|-0.3754493	chr5	139496842	139499678	+	NA	NA	NA	NA	C5orf53	NA	chr5:139505521-139508391	inner
CUST_21160_PI429285431	0.92729586	A	3.4619088	A	0.172585965974579	0	lncRNA	22783-1_{1..498}	lnc-RASGEF1B-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RASGEF1B-1:5	chr4	 82965154	 82965651	-	lnc-RASGEF1B-1	lnc-RASGEF1B-1:5	ENSG00000251331.1	RP11-689K5.3	NA	NA	NA	inter
LNCA_21_P0003055	0.9038803	A	0.8955934	A	1.00576057000812	0	lncRNA	TCONS_00006294	NA	NA	NA	NA	XLOC_002900	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002900), lincRNA [TCONS_00006294]"	chr3:164338476-164338535	hs|3q26.1	Agilent_HUMAN_G3V2	TCONS_00006294	TCONS_00006294	chr3	164338476	164338535	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19488_PI429285431	0.89864373	A	0.9062694	A	0.994728233133293	0	lncRNA	21144-1_{1..527}	lnc-COL4A3BP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COL4A3BP-1:1	chr5	 74632634	 74633160	-	lnc-COL4A3BP-1	lnc-COL4A3BP-1:1	ENSG00000247372.2	CTD-2235C13.2	HMGCR	NA	chr5:74632993-74642739	inter
CUST_12770_PI429285431	6.176607	P	6.1178107	P	1.04159635138595	0	lncRNA	14393-1_{1..651}	lnc-FAM75A7-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM75A7-2:2	chr9	 65782591	 65783241	-	lnc-FAM75A7-2	lnc-FAM75A7-2:2	XLOC_007703	linc-FAM75A7-9	NA	NA	NA	inter
CUST_48939_PI429285431	0.91642267	A	0.9181955	A	0.998771922588906	0	lncRNA	52781-1_{1..577}	hg19_lincRNAsTranscripts_TCONS_l2_00018934 range=chr3:151358408-151375840 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018934 range=chr3:151358408-151375840 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	151358408	151358984	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37739_PI429285431	1.2752528	A	1.5828153	A	0.808005769738579	0	lncRNA	38832-1_{1..1058}	n346240|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1790|NULL|-1.3216000|-0.1106638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346240|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1790|NULL|-1.3216000|-0.1106638	chrX	148615742	148616799	-	NA	NA	NA	NA	CXorf40A	NA	chrX:148622519-148629704	inter
CUST_40855_PI429285431	1.0918214	A	1.1411469	A	0.966388036570552	0	lncRNA	41556-2_{3001..3294}	n410631|NR_037870|lncRNA|Homosapiens||RefGeneNoncode|NR_037870||5.2329800|-0.1876705	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410631|NR_037870|lncRNA|Homosapiens||RefGeneNoncode|NR_037870||5.2329800|-0.1876705	chr1	159168774	159169067	-	NA	NA	NA	NA	CADM3	"hg19_refFlat_CADM3:range=chr1:159141556-1591707125'pad=0,hg19_refFlat_CADM3:range=chr1:159141556-1591707125'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.70chr1:159155774-159172932"	NA	inter
CUST_23033_PI429285431	0.89438653	A	0.8923145	A	1.00143725361293	0	lncRNA	24604-1_{1..649}	lnc-CLVS2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CLVS2-3:1	chr6	124149932	124150580	+	lnc-CLVS2-3	lnc-CLVS2-3:1	ENSG00000237321.1	RP11-374A22.1	NKAIN2	NA	chr6:124139932-124160430	inner
CUST_40803_PI429285431	1.0602	A	0.89824986	A	1.11879843433741	0	lncRNA	41510-2_{3001..6000}	n410565|NR_037804|lncRNA|Homosapiens||RefGeneNoncode|NR_037804||14.2283000|-0.2590850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410565|NR_037804|lncRNA|Homosapiens||RefGeneNoncode|NR_037804||14.2283000|-0.2590850	chr3	132279981	132282980	-	NA	NA	NA	NA	UBA5	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70chr3:132365965-132396944"	NA	inter
CUST_43021_PI429285431	2.163602	A	2.0610473	A	1.07367302223085	0	lncRNA	46329-1_{1..110}	ENST00000408096 ncrna:snRNA chromosome:GRCh37:2:182603333:182603442:1 gene:ENSG00000221023 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408096 ncrna:snRNA chromosome:GRCh37:2:182603333:182603442:1 gene:ENSG00000221023 gene_biotype:snRNA transcript_biotype:snRNA	chr2	182603333	182603442	+	ENSG00000221023	ENST00000408096	NA	NA	NA	NA	NA	inter
CUST_21747_PI429285431	5.1930037	P	5.051526	P	1.1030343353755	0	lncRNA	23357-1_{1..1357}	lnc-ASH1L-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASH1L-1:4	chr1	155290926	155292282	-	lnc-ASH1L-1	lnc-ASH1L-1:4	ENSG00000225855.2	RUSC1-AS1	FDPS	"hg19_refFlat_FDPS:range=chr1:155287765-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155287765-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FDPS:range=chr1:155279856-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155279856-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FDPS:range=chr1:155279581-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155279581-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00chr1:155280926-155290457"	NA	inner
CUST_47637_PI429285431	1.1253451	A	1.3531494	A	0.85393354168351	0	lncRNA	51626-1_{1..652}	"gi|310124223|ref|XR_109781.1| PREDICTED: Homo sapiens uncharacterized LOC100126447 (LOC100126447), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124223|ref|XR_109781.1| PREDICTED: Homo sapiens uncharacterized LOC100126447 (LOC100126447), misc_RNA"	ChrX	115944899	115945550	-	100126447	XR_109781.1	NA	NA	NA	NA	NA	inter
CUST_51156_PI429285431	1.3019081	A	0.8913582	A	1.32919235468406	0	lncRNA	54778-1_{1..500}	hg19_lincRNAsTranscripts_TCONS_l2_00007673 range=chr14:36417310-36417863 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007673 range=chr14:36417310-36417863 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 36417310	 36417809	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29189_PI429285431	0.8929731	A	0.8986067	A	0.996102700305864	0	lncRNA	30934-1_{1..378}	n326704|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099354|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099354|-1.0182100|-0.3515208	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326704|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099354|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099354|-1.0182100|-0.3515208	chr1	 12805135	 12805512	-	NA	NA	NA	NA	C1orf158	NA	chr1:12806163-12815609	inter
CUST_24915_PI429285431	0.91238964	A	0.90971327	A	1.00185684011617	0	lncRNA	26456-1_{1..448}	lnc-DDX60L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DDX60L-1:1	chr4	169569643	169570090	-	lnc-DDX60L-1	lnc-DDX60L-1:1	ENSG00000249623.1	RP11-610J23.1	PALLD	NA	chr4:169559643-169579738	inner
CUST_43557_PI429285431	3.0641475	P	1.5903751	A	2.77747206214408	0	lncRNA	48332-1_{1..2377}	"gi|310118634|ref|XR_110490.1| PREDICTED: Homo sapiens uncharacterized LOC100506392 (LOC100506392), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310118634|ref|XR_110490.1| PREDICTED: Homo sapiens uncharacterized LOC100506392 (LOC100506392), misc_RNA"	NA	NA	NA	NA	NA	XR_110490.1	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-58.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50"	NA	Unknown
CUST_36701_PI429285431	1.083535	A	1.7552713	A	0.627750727261146	0	lncRNA	37882-1_{1..271}	n345189|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_738|NULL|-1.3883200|-0.1613855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345189|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_738|NULL|-1.3883200|-0.1613855	chr12	 96556590	 96556860	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4960_PI429285431	2.7130446	A	2.3359883	A	1.29868928203346	0	lncRNA	4904-1_{1..1701}	"transcript_id ""ENST00000554522.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554522.1"" | genecode_v17"	chr14	 95795921	 95797621	+	ENSG00000258630.1	ENST00000554522.1	RP11-725G5.2	RP11-725G5.2-001	CLMN	NA	chr14:95785921-95786245	inter
CUST_19448_PI429285431	0.92093545	A	0.9214414	A	0.999649363671287	0	lncRNA	21107-1_{1..717}	lnc-HSPB3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-HSPB3-1:1	chr5	 53710852	 53711568	+	lnc-HSPB3-1	lnc-HSPB3-1:1	ENSG00000249069.2	RP11-461C13.1	NA	NA	NA	inter
CUST_5060_PI429285431	2.4800224	A	1.8548075	A	1.54244056612376	0	lncRNA	5000-1_{1..537}	"transcript_id ""ENST00000553757.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553757.1"" | genecode_v17"	chr14	104689921	104690457	+	ENSG00000258913.1	ENST00000553757.1	RP11-260M19.2	RP11-260M19.2-001	NA	NA	NA	inter
CUST_47892_PI429285431	1.3330309	A	1.329931	A	1.00215099702706	0	lncRNA	51786-1_{1..2226}	"gi|410171809|ref|XR_171390.1| PREDICTED: Homo sapiens uncharacterized LOC100287063 (LOC100287063), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171809|ref|XR_171390.1| PREDICTED: Homo sapiens uncharacterized LOC100287063 (LOC100287063), misc_RNA"	NA	NA	NA	NA	NA	XR_171390.1	NA	NA	NA	NA	NA	Unknown
CUST_19263_PI429285431	0.90805566	A	0.9112124	A	0.997814306683131	0	lncRNA	20931-1_{1..459}	lnc-FAM72B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM72B-3:1	chr1	120935378	120935836	+	lnc-FAM72B-3	lnc-FAM72B-3:1	ENSG00000234998.1	RP11-439A17.10	FCGR1B	NA	chr1:120926908-120935944	inner
CUST_28751_PI429285431	0.8934964	A	0.8973116	A	0.997358998473678	0	lncRNA	30455-1_{1..3000}	n326151|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096163|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096163|0.2448390|-0.3383417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326151|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096163|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096163|0.2448390|-0.3383417	chr1	241286238	241289237	-	NA	NA	NA	NA	RGS7	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.41;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-24.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80chr1:241276238-241341669"	NA	inner
CUST_36437_PI429285431	1.2186954	A	2.1745577	A	0.51553336283564	0	lncRNA	37651-1_{1..2061}	n344951|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_500|NULL|-1.3891300|-0.3236701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344951|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_500|NULL|-1.3891300|-0.3236701	chr7	 30552622	 30554682	+	NA	NA	NA	NA	GGCT	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.42;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-26.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10chr7:30542622-30544457"	NA	inter
CUST_43574_PI429285431	3.0079234	A	3.2155502	P	0.865960545411416	0	lncRNA	48345-4_{9001..10311}	"gi|410170851|ref|XR_110613.3| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170851|ref|XR_110613.3| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	XR_110613.3	NA	NA	NA	NA	NA	Unknown
CUST_14039_PI429285431	2.4903922	A	2.0724583	A	1.33601286484811	0	lncRNA	15685-1_{1..416}	lnc-CAND1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CAND1-1:1	chr12	 67814937	 67815352	+	lnc-CAND1-1	lnc-CAND1-1:1	XLOC_009790	linc-DYRK2-2	NA	NA	NA	inter
CUST_7580_PI429285431	2.2109218	A	1.6168978	A	1.50945107883393	0	lncRNA	9215-2_{3001..4894}	lnc-DEFB1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DEFB1-1:2	chr8	  6695958	  6697851	-	lnc-DEFB1-1	lnc-DEFB1-1:2	ENSG00000186530	XKR5	XKR5	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30chr8:6682958-6693166"	NA	inner
CUST_16893_PI429285431	3.2690454	A	3.127168	A	1.10333997439865	0	lncRNA	18601-1_{1..273}	lnc-AC006156.2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC006156.2-6:1	chrY	  8559306	  8559578	-	lnc-AC006156.2-6	lnc-AC006156.2-6:1	XLOC_008317	linc-AMELY-2	NA	NA	NA	inter
CUST_35569_PI429285431	3.3393593	P	3.9309359	P	0.663617299143127	0	lncRNA	36983-1_{1..3000}	n342699|BX538325|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5201|NULL|0.3502980|-0.2754393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342699|BX538325|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5201|NULL|0.3502980|-0.2754393	chr5	141785943	141788942	+	NA	NA	NA	NA	NA	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-60.04;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80"	NA	inter
CUST_43947_PI429285431	8.778971	P	8.825234	P	0.968441628444135	0	lncRNA	48657-1_{1..2999}	"gi|402513682|ref|NR_073132.1| Homo sapiens primary ciliary dyskinesia protein 1 (PCDP1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402513682|ref|NR_073132.1| Homo sapiens primary ciliary dyskinesia protein 1 (PCDP1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_073132.1	NA	NA	NA	NA	NA	Unknown
CUST_38258_PI429285431	3.0751276	A	2.5461469	A	1.44290938386509	0	lncRNA	39316-1_{1..3000}	n381802|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qfd.1||-0.0048662|-0.1593416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381802|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qfd.1||-0.0048662|-0.1593416	chr11	129564512	129567511	+	NA	NA	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.59;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-32.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
LNCA_21_P0014231	4.220889	P	4.6216283	P	0.757470023033678	0	lncRNA	XR_108949	XR_108949	XR_108949	NA	NA	HMGA1P4	high mobility group AT-hook 1 pseudogene 4	ENST00000428643	THC2714238	NA	"PREDICTED: Homo sapiens hypothetical LOC100506080 (LOC100506080), miscRNA [XR_108949]"	chr9:131425559-131425500	hs|9q34.11	Agilent_HUMAN_G3V2	XR_108949	XR_108949	chr9	131425500	131425559	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47488_PI429285431	1.0377451	A	2.429671	A	0.38105577894777	0	lncRNA	51507-2_{3001..4941}	"gi|402747157|ref|NR_073136.1| Homo sapiens Hermansky-Pudlak syndrome 4 (HPS4), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402747157|ref|NR_073136.1| Homo sapiens Hermansky-Pudlak syndrome 4 (HPS4), transcript variant 6, non-coding RNA"	Chr22	 26849848	 26851788	-	89781	NR_073136.1	NA	NA	NA	NA	NA	inter
CUST_23865_PI429285431	3.4151468	P	2.6070096	A	1.75094916637459	0	lncRNA	25427-1_{1..330}	lnc-TNNI2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNNI2-1:1	chr11	  1887734	  1888063	+	lnc-TNNI2-1	lnc-TNNI2-1:1	ENSG00000249086.1	AC051649.12	LSP1	NA	chr11:1877734-1897897	inner
CUST_10727_PI429285431	0.91029507	A	1.0432613	A	0.91195451191839	0	lncRNA	12265-1_{1..653}	lnc-WWOX-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WWOX-2:3	chr16	 79780915	 79781567	+	lnc-WWOX-2	lnc-WWOX-2:3	XLOC_011797	linc-DYNLRB2-3	NA	NA	NA	inter
CUST_51159_PI429285431	0.9028088	A	0.90400577	A	0.999170667705567	0	lncRNA	54781-1_{1..528}	hg19_lincRNAsTranscripts_TCONS_l2_00008028 range=chr14:39214314-39232329 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008028 range=chr14:39214314-39232329 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr14	 39214314	 39214841	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20582_PI429285431	8.584343	P	8.460877	P	1.08934882535977	0	lncRNA	22223-1_{1..473}	lnc-MTX1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTX1-1:5	chr1	155174826	155175298	+	lnc-MTX1-1	lnc-MTX1-1:5	ENSG00000231064.1	RP11-263K19.4	THBS3	"hg19_refFlat_THBS3:range=chr1:155165632-1551776675'pad=0,hg19_refFlat_THBS3:range=chr1:155165632-1551776675'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00chr1:155165379-155177690"	NA	inner
CUST_3760_PI429285431	1.3911195	A	0.89562577	A	1.40980314608075	0	lncRNA	3728-1_{1..168}	"transcript_id ""ENST00000446794.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446794.1"" | genecode_v17"	chr10	 89351364	 89351531	-	ENSG00000223761.1	ENST00000446794.1	RP11-57C13.4	RP11-57C13.4-001	NA	NA	NA	inter
CUST_49713_PI429285431	0.90033495	A	0.89788014	A	1.00170299307879	0	lncRNA	53489-2_{3001..3104}	hg19_lincRNAsTranscripts_TCONS_l2_00026431 range=chr7:25694737-25815818 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026431 range=chr7:25694737-25815818 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 25697737	 25697840	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39008_PI429285431	1.0867462	A	0.90602803	A	1.13344797246271	0	lncRNA	39988-1_{1..1925}	n385313|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wlw.1||-0.8165070|-0.2044180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385313|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wlw.1||-0.8165070|-0.2044180	chr7	155023290	155025214	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42986_PI429285431	2.2394443	A	2.1093714	A	1.09434899778849	0	lncRNA	46142-1_{1..71}	ENST00000384569 ncrna:snoRNA chromosome:GRCh37:11:89851559:89851629:1 gene:ENSG00000207299 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384569 ncrna:snoRNA chromosome:GRCh37:11:89851559:89851629:1 gene:ENSG00000207299 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 89851559	 89851629	+	ENSG00000207299	ENST00000384569	NA	NA	NA	NA	NA	inter
CUST_31763_PI429285431	0.9190126	A	0.9016155	A	1.0121317506845	0	lncRNA	33504-1_{1..1641}	n338303|BC012943|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|697|NULL|-1.2311300|-0.3942973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338303|BC012943|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|697|NULL|-1.2311300|-0.3942973	chr14	 45838417	 45840057	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007379	0.9236377	A	0.9108177	A	1.00892574586504	0	lncRNA	ENST00000526840	NA	AY726583	NA	Hs.547927	XLOC_009515	NA	ENST00000526840	THC2605457	NA	"BROAD Institute lincRNA (XLOC_009515), lincRNA [TCONS_00020108]"	chr11:80473322-80473263	hs|11q14.1	Agilent_HUMAN_G3V2	ENST00000526840	ENST00000526840	chr11	 80473263	 80473322	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39660_PI429285431	1.2144809	A	0.90227205	A	1.24160721828178	0	lncRNA	40599-1_{1..2783}	n405267|NR_001284_5|lncRNA|Homosapiens||RefGeneNoncode|NR_001284_5||-1.1467800|-0.2592468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405267|NR_001284_5|lncRNA|Homosapiens||RefGeneNoncode|NR_001284_5||-1.1467800|-0.2592468	chr6	  3356040	  3358822	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3346040-3370644	inner
CUST_44102_PI429285431	1.2479151	A	0.90949744	A	1.26436908013528	0	lncRNA	48767-1_{1..2585}	"gi|358438320|ref|NR_045572.1| Homo sapiens cell adhesion molecule with homology to L1CAM (close homolog of L1) (CHL1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|358438320|ref|NR_045572.1| Homo sapiens cell adhesion molecule with homology to L1CAM (close homolog of L1) (CHL1), transcript variant 4, non-coding RNA"	Chr3	   239326	   241910	+	10752	NR_045572.1	NA	NA	NA	NA	NA	inter
CUST_33802_PI429285431	1.8344159	A	2.8109531	A	0.508198069455626	0	lncRNA	35354-1_{1..1996}	n340591|AK001910|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3053|NULL|-1.0187800|-0.4209529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n340591|AK001910|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3053|NULL|-1.0187800|-0.4209529	chr5	115365619	115367614	+	NA	NA	NA	NA	AQPEP	NA	chr5:115355619-115363299	inter
CUST_27536_PI429285431	6.3911657	P	6.734987	P	0.78795147993113	0	lncRNA	29111-2_{3001..3215}	n324720|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320107|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320107|0.2099150|-0.2705541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324720|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320107|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320107|0.2099150|-0.2705541	chr22	 19988278	 19988492	-	NA	NA	NA	NA	C22orf25	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30chr22:20008631-20019331"	NA	inner
CUST_4556_PI429285431	0.89974236	A	1.3944645	A	0.709698351333058	0	lncRNA	4505-1_{1..699}	"transcript_id ""ENST00000423575.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423575.1"" | genecode_v17"	chr13	 21897408	 21898106	-	ENSG00000224429.2	ENST00000423575.1	LINC00422	LINC00422-003	NA	NA	NA	inter
CUST_35373_PI429285431	8.89834	P	9.19965	P	0.811515187407604	0	lncRNA	36781-1_{1..1801}	n342420|AK124090|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4913|NULL|-0.9249960|-0.2558941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342420|AK124090|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4913|NULL|-0.9249960|-0.2558941	chr2	 70629126	 70630926	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006510	10.220115	P	11.225623	P	0.498094712035306	0	lncRNA	TCONS_00017228	NA	NA	NA	NA	XLOC_008043	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008043), lincRNA [TCONS_00017228]"	chrX:106951796-106951855	hs|Xq22.3	Agilent_HUMAN_G3V2	TCONS_00017228	TCONS_00017228	chrX	106951796	106951855	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005122	1.0414203	A	0.92093545	A	1.0871001455082	0	lncRNA	ENST00000420766	XR_108615	XR_108615	NA	Hs.566513	XLOC_005371	NA	ENST00000420766	THC2660221	NA	"PREDICTED: Homo sapiens hypothetical LOC100506908 (LOC100506908), miscRNA [XR_108615]"	chr6:84716668-84716727	hs|6q14.2	Agilent_HUMAN_G3V2	ENST00000420766	ENST00000420766	chr6	 84716668	 84716727	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39912_PI429285431	9.612394	P	9.09834	P	1.42805743079974	0	lncRNA	40793-1_{1..1862}	n406654|NR_024185|lncRNA|Homosapiens||RefGeneNoncode|NR_024185||2.1764100|-0.1842399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406654|NR_024185|lncRNA|Homosapiens||RefGeneNoncode|NR_024185||2.1764100|-0.1842399	chr7	134850531	134852392	-	NA	NA	NA	NA	TMEM140	NA	chr7:134840531-134850967	inner
LNCA_21_P0010809	2.1602094	A	2.2700706	A	0.926677212130909	0	lncRNA	ENST00000426922	NA	NA	NA	NA	XLOC_l2_001520	NA	ENST00000426922	THC2722425	NA	"BROAD Institute lincRNA (XLOC_l2_001520), lincRNA [TCONS_l2_00003923]"	chr10:29096973-29097032	hs|10p12.1	Agilent_HUMAN_G3V2	ENST00000426922	ENST00000426922	chr10	 29096973	 29097032	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28260_PI429285431	0.8980224	A	0.9067011	A	0.994002441157297	0	lncRNA	29896-1_{1..2141}	n325553|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257715|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257715|0.5584850|-0.3028678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325553|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257715|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257715|0.5584850|-0.3028678	chr17	 36959383	 36961523	-	NA	NA	NA	NA	CWC25	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40chr17:36957446-36974273"	NA	inter
CUST_44852_PI429285431	4.1489363	P	4.5251684	P	0.770447149265638	0	lncRNA	49379-1_{1..504}	"gi|310119877|ref|XR_110198.1| PREDICTED: Homo sapiens hCG1817208 (LOC729995), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119877|ref|XR_110198.1| PREDICTED: Homo sapiens hCG1817208 (LOC729995), misc_RNA"	NA	NA	NA	NA	NA	XR_110198.1	NA	NA	NA	NA	NA	Unknown
CUST_34427_PI429285431	1.2405484	A	0.92678785	A	1.24294335538777	0	lncRNA	35907-1_{1..1287}	n341303|BC039665|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3772|NULL|-0.9309440|-0.3829473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n341303|BC039665|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3772|NULL|-0.9309440|-0.3829473	chr7	115319398	115320684	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_90_PI429201921	1.1570718	A	0.9267441	A	1.17310138230011	0	lncRNA	93-1_{1..2631}	TC02003417.hg.1	TCONS_00002712-XLOC_001575 // Rinn lincRNAs // linc-LOC285033-5 chr2:+:96331831-96334463 // chr2 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr2:+:96331831-96334463	NA	Affy_HUMAN_HTA2.0	TCONS_00002712-XLOC_001575	linc-LOC285033-5	chr2	 96331831	 96334463	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4215_PI429285431	1.1347204	A	0.9076759	A	1.17043474303544	0	lncRNA	4174-1_{1..509}	"transcript_id ""ENST00000551202.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551202.1"" | genecode_v17"	chr12	 30383718	 30384226	-	ENSG00000257756.1	ENST00000551202.1	RP11-776A13.3	RP11-776A13.3-002	NA	NA	NA	inter
CUST_23597_PI429285431	0.9067011	A	0.9504796	A	0.970110842063836	0	lncRNA	25163-1_{1..478}	lnc-AHCY-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AHCY-1:1	chr20	 32868833	 32869310	-	lnc-AHCY-1	lnc-AHCY-1:1	ENSG00000250917.1	RP4-785G19.5	AHCY	NA	chr20:32868071-32878979	inner
CUST_5858_PI429285431	3.9117675	P	3.7331562	P	1.1317939259681	0	lncRNA	5787-1_{1..1191}	"transcript_id ""ENST00000590740.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590740.1"" | genecode_v17"	chr17	 41316200	 41317390	-	ENSG00000267002.1	ENST00000590740.1	RP11-242D8.1	RP11-242D8.1-001	NBR1	NA	chr17:41320087-41332420	inter
CUST_28758_PI429285431	0.906406	A	0.90365005	A	1.00191210471752	0	lncRNA	30465-1_{1..448}	n326161|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000095448|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000095448|0.0187765|-0.3608279	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326161|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000095448|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000095448|0.0187765|-0.3608279	chr1	237499647	237500094	-	NA	NA	NA	NA	RYR2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80chr1:237489647-237537860"	NA	inner
CUST_22633_PI429285431	4.0536575	P	4.7750354	P	0.606517887825765	0	lncRNA	24219-1_{1..473}	lnc-FAM110B-8:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM110B-8:5	chr8	 58115478	 58115950	+	lnc-FAM110B-8	lnc-FAM110B-8:5	ENSG00000253301.1	RP11-513O17.2	NA	NA	NA	inter
LNCA_21_P0008436	2.4030828	A	1.3476033	A	2.07840888025238	0	lncRNA	ENST00000556130	XR_110289	XR_110289	NA	Hs.99743	XLOC_011017	NA	ENST00000556130	THC2525657	NA	"PREDICTED: Homo sapiens hypothetical LOC100506446 (LOC100506446), miscRNA [XR_110289]"	chr14:50412975-50412916	hs|14q21.3	Agilent_HUMAN_G3V2	ENST00000556130	ENST00000556130	chr14	 50412916	 50412975	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010337	5.67213	P	5.906974	P	0.849776881361014	0	lncRNA	ENST00000449652	XR_109758	XR_109758	NA	Hs.475243	XLOC_014420	NA	ENST00000449652	THC2604778	NA	"PREDICTED: Homo sapiens hypothetical LOC100506917 (LOC100506917), miscRNA [XR_109758]"	chr22:51174318-51174259	hs|22q13.33	Agilent_HUMAN_G3V2	ENST00000449652	ENST00000449652	chr22	 51174259	 51174318	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15116_PI429285431	0.91959745	A	1.1838073	A	0.832654646678066	0	lncRNA	16775-7_{18001..19195}	lnc-KIF13B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIF13B-1:1	chr8	 29167969	 29169163	-	lnc-KIF13B-1	lnc-KIF13B-1:1	XLOC_007035	linc-KIF13B	NA	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0,hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
CUST_6192_PI429285431	1.0321927	A	1.3162143	A	0.821298404197472	0	lncRNA	6116-1_{1..565}	"transcript_id ""ENST00000587346.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587346.1"" | genecode_v17"	chr18	 53388627	 53389191	+	ENSG00000267284.1	ENST00000587346.1	RP11-397A16.1	RP11-397A16.1-001	NA	NA	NA	inter
CUST_40708_PI429285431	2.8618147	A	1.3605869	A	2.83083527121979	0	lncRNA	41449-1_{1..3000}	n410280|NR_037177|lncRNA|Homosapiens||RefGeneNoncode|NR_037177||-1.0050500|-0.3227207	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410280|NR_037177|lncRNA|Homosapiens||RefGeneNoncode|NR_037177||-1.0050500|-0.3227207	chr6	 32861952	 32864951	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_441_PI429285431	3.149091	P	3.2256608	A	0.948309701259537	0	lncRNA	433-1_{1..795}	"transcript_id ""ENST00000595668.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595668.1"" | genecode_v17"	chr1	147635156	147635950	+	ENSG00000232265.2	ENST00000595668.1	XXyac-YX155B6.5	XXyac-YX155B6.5-009	NA	NA	NA	inter
LNCA_21_P0010522	0.9201273	A	0.91868305	A	1.00100157906117	0	lncRNA	ENST00000451482	NA	BC030768	NA	Hs.375067	XLOC_l2_000116	NA	ENST00000451482	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000116), lincRNA [TCONS_l2_00000169]"	chr1:26554404-26554463	hs|1p36.11	Agilent_HUMAN_G3V2	ENST00000451482	ENST00000451482	chr1	 26554404	 26554463	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9584_PI429285431	2.4812982	A	2.554792	A	0.950333769041251	0	lncRNA	11100-1_{1..2253}	lnc-SLC29A3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC29A3-1:1	chr10	 73139523	 73141775	+	lnc-SLC29A3-1	lnc-SLC29A3-1:1	XLOC_008510	linc-CDH23	NA	NA	NA	inter
CUST_7700_PI429285431	4.2099442	P	3.9022214	P	1.23775244574024	0	lncRNA	9333-1_{1..1408}	lnc-SOX8-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SOX8-1:2	chr16	   983338	   984745	+	lnc-SOX8-1	lnc-SOX8-1:2	ENSG00000250911	ENSG00000260439.1	LMF1	NA	chr16:973338-994495	inner
CUST_36543_PI429285431	0.90285957	A	0.9046099	A	0.99878749936907	0	lncRNA	37739-2_{3001..4843}	n345041|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_590|NULL|-1.5868200|-0.3322607	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345041|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_590|NULL|-1.5868200|-0.3322607	chr9	  4879529	  4881371	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20"	NA	inter
CUST_23522_PI429285431	10.307087	P	10.566586	P	0.835377968044846	0	lncRNA	25089-1_{1..475}	lnc-TTC40-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTC40-4:1	chr10	134899993	134900467	-	lnc-TTC40-4	lnc-TTC40-4:1	ENSG00000256925.1	RP13-439H18.4	GPR123	NA	chr10:134901409-134910201	inter
CUST_27617_PI429285431	0.89603376	A	0.896492	A	0.999682422674338	0	lncRNA	29195-1_{1..438}	n324820|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000193089|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000193089|-1.2982200|-0.5286812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324820|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000193089|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000193089|-1.2982200|-0.5286812	chr21	 32374499	 32374936	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1755_PI429285431	2.004447	A	1.2716616	A	1.66184450645287	0	lncRNA	1741-1_{1..957}	"transcript_id ""ENST00000510551.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510551.1"" | genecode_v17"	chr4	 40318502	 40319458	+	ENSG00000249241.1	ENST00000510551.1	AC195454.1	AC195454.1-001	CHRNA9	NA	chr4:40337469-40342436	inter
CUST_48839_PI429285431	0.9172007	A	1.032714	A	0.923053836714574	0	lncRNA	52677-1_{1..1345}	hg19_lincRNAsTranscripts_TCONS_l2_00019349 range=chr3:72084986-72150120 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019349 range=chr3:72084986-72150120 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 72084986	 72086330	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13651_PI429285431	0.89139426	A	0.8899934	A	1.00097147373458	0	lncRNA	15289-1_{1..733}	lnc-KCNT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNT2-1:1	chr1	196129500	196130232	-	lnc-KCNT2-1	lnc-KCNT2-1:1	XLOC_001138	linc-B3GALT2-3	NA	NA	NA	inter
CUST_40793_PI429285431	5.474981	P	4.184126	P	2.44673015800943	0	lncRNA	41503-1_{1..3000}	n410553|NR_037771|lncRNA|Homosapiens||RefGeneNoncode|NR_037771||11.3096000|-0.3242510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410553|NR_037771|lncRNA|Homosapiens||RefGeneNoncode|NR_037771||11.3096000|-0.3242510	chr10	121652084	121655083	+	NA	NA	NA	NA	SEC23IP	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80chr10:121652085-121704170"	NA	inter
CUST_5447_PI429285431	1.0553682	A	1.1238773	A	0.953622975517348	0	lncRNA	5381-1_{1..1937}	"transcript_id ""ENST00000563613.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563613.1"" | genecode_v17"	chr16	 19354969	 19356905	-	ENSG00000259925.1	ENST00000563613.1	CTA-363E6.2	CTA-363E6.2-002	TMC5	NA	chr16:19422057-19423015	inter
CUST_51329_PI429285431	15.486464	P	14.214016	P	2.41571121716474	0	lncRNA	54931-1_{1..698}	hg19_lincRNAsTranscripts_TCONS_l2_00009118 range=chr15:53229050-53229852 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009118 range=chr15:53229050-53229852 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 53229050	 53229747	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29465_PI429285431	0.8968912	A	1.2048655	A	0.807775167093387	0	lncRNA	31223-1_{1..245}	n332878|AF086001|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066880|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066880|-1.3046100|-0.3309763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332878|AF086001|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066880|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066880|-1.3046100|-0.3309763	chr4	  3314544	  3314788	+	NA	NA	NA	NA	RGS12	NA	chr4:3315874-3324789	inter
CUST_26697_PI429285431	4.8989053	P	4.971096	P	0.951192536379428	0	lncRNA	28203-2_{3001..6000}	n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	chr13	 70684309	 70687308	+	NA	NA	NA	NA	KLHL1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0,hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0 3'pad=0 strand=- repeatMasking=none,-105.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr13:70671309-70682625"	NA	inner
CUST_11891_PI429285431	2.0162885	A	2.7121022	A	0.617361020177628	0	lncRNA	13473-1_{1..1267}	lnc-ICOSLG-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ICOSLG-6:2	chr21	 45579708	 45580974	-	lnc-ICOSLG-6	lnc-ICOSLG-6:2	XLOC_014110	linc-CSTB-1	NA	"hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-54.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00"	NA	inter
CUST_20432_PI429285431	6.186207	P	6.300083	P	0.924101995831471	0	lncRNA	22076-1_{1..555}	lnc-ZRANB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZRANB1-1:1	chr10	126631026	126631580	+	lnc-ZRANB1-1	lnc-ZRANB1-1:1	ENSG00000249456.1	RP11-298J20.4	ZRANB1	NA	chr10:126630692-126641450	inner
CUST_474_PI429285431	0.9064319	A	1.2644517	A	0.780234771913082	0	lncRNA	465-1_{1..389}	"transcript_id ""ENST00000422548.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422548.1"" | genecode_v17"	chr1	168370721	168371109	-	ENSG00000228697.1	ENST00000422548.1	RP5-968D22.1	RP5-968D22.1-002	NA	NA	NA	inter
CUST_40916_PI429285431	0.8953742	A	0.90824354	A	0.991119321517129	0	lncRNA	41602-1_{1..1717}	n410762|NR_038216|lncRNA|Homosapiens||RefGeneNoncode|NR_038216||1.0224800|-0.2442433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410762|NR_038216|lncRNA|Homosapiens||RefGeneNoncode|NR_038216||1.0224800|-0.2442433	chr6	134758853	134760569	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41792_PI429285431	1.0832378	A	2.9876773	A	0.267120110420685	0	lncRNA	43373-1_{1..97}	ENST00000385039 ncrna:miRNA chromosome:GRCh37:19:46178186:46178282:1 gene:ENSG00000207773 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385039 ncrna:miRNA chromosome:GRCh37:19:46178186:46178282:1 gene:ENSG00000207773 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 46178186	 46178282	+	ENSG00000207773	ENST00000385039	NA	NA	GIPR	NA	chr19:46171502-46185717	inter
CUST_8935_PI429285431	7.862037	P	7.6867847	P	1.12916185653298	0	lncRNA	10470-1_{1..609}	lnc-FBN2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FBN2-2:2	chr5	127418662	127419270	-	lnc-FBN2-2	lnc-FBN2-2:2	ENSG00000245937	CTC-228N24.3	SLC12A2	NA	chr5:127419483-127428782	inter
CUST_10870_PI429285431	0.89451283	A	0.89289415	A	1.00112261313716	0	lncRNA	12408-2_{3001..3458}	lnc-DEK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DEK-1:1	chr6	 18760484	 18760941	-	lnc-DEK-1	lnc-DEK-1:1	XLOC_005629	linc-DEK-6	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
CUST_2386_PI429285431	3.4131107	P	4.1605043	P	0.595678750413104	0	lncRNA	2379-1_{1..493}	"transcript_id ""ENST00000504204.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504204.1"" | genecode_v17"	chr5	144602173	144602665	-	ENSG00000251031.1	ENST00000504204.1	CTC-367F4.1	CTC-367F4.1-001	NA	"hg19_refFlat_ASS1:range=chr9:133327616-1333764085'pad=0,hg19_refFlat_ASS1:range=chr9:133327616-1333764085'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00"	NA	inter
CUST_21208_PI429285431	2.9825087	A	2.9836466	A	0.999211578790702	0	lncRNA	22833-1_{1..1217}	lnc-GGCT-1:21	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GGCT-1:21	chr7	 30602358	 30603574	-	lnc-GGCT-1	lnc-GGCT-1:21	ENSG00000196295.5	AC005154.6	NA	NA	NA	inter
CUST_18255_PI429285431	6.945863	P	6.810089	P	1.09868209415808	0	lncRNA	19990-1_{1..3000}	lnc-RP11-195B21.3.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-RP11-195B21.3.1-2:1	chr9	 68412089	 68415088	+	lnc-RP11-195B21.3.1-2	lnc-RP11-195B21.3.1-2:1	ENSG00000203508	CR786580.1	NA	NA	NA	inter
LNCA_21_P0001787	0.9055538	A	0.9243994	A	0.987022173246201	0	lncRNA	ENST00000454673	NA	AK095550	NA	Hs.468368	XLOC_002078	NA	ENST00000454673	THC2518689	NA	"BROAD Institute lincRNA (XLOC_002078), lincRNA [TCONS_00002751]"	chr2:45414659-45414600	hs|2p21	Agilent_HUMAN_G3V2	ENST00000454673	ENST00000454673	chr2	 45414600	 45414659	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00316538	3.5510674	P	3.6461792	P	0.936199694900133	0	lncRNA	ENST00000444266	NA	NA	NA	NA	XLOC_002141	NA	ENST00000444266	THC2675877	NA	"BROAD Institute lincRNA (XLOC_002141), lincRNA [TCONS_00003314]"	chr2:67148734-67148675	hs|2p14	Agilent_HUMAN_G3V2	ENST00000444266	ENST00000444266	chr2	 67148675	 67148734	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006304	1.0908606	A	0.89693063	A	1.14387544688708	0	lncRNA	TCONS_00016442	NA	NA	NA	NA	XLOC_007808	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007808), lincRNA [TCONS_00016442]"	chr9:102480293-102480234	hs|9q22.33	Agilent_HUMAN_G3V2	TCONS_00016442	TCONS_00016442	chr9	102480234	102480293	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49155_PI429285431	0.9124823	A	0.907611	A	1.00338223475221	0	lncRNA	52981-1_{1..1919}	hg19_lincRNAsTranscripts_TCONS_l2_00020756 range=chr4:129387805-129440563 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020756 range=chr4:129387805-129440563 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	129387805	129389723	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48852_PI429285431	0.8925185	A	0.8941993	A	0.998835636616611	0	lncRNA	52688-1_{1..1440}	hg19_lincRNAsTranscripts_TCONS_l2_00019607 range=chr3:162845745-163022437 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019607 range=chr3:162845745-163022437 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	162845745	162847184	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34095_PI429285431	6.484755	P	6.8782096	P	0.761304441438396	0	lncRNA	35620-3_{6001..6185}	n340916|BX537550|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3381|NULL|1.8330300|-0.1877632	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340916|BX537550|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3381|NULL|1.8330300|-0.1877632	chr17	 78446634	 78446818	-	NA	NA	NA	NA	NPTX1	NA	chr17:78440633-78450404	inner
CUST_20588_PI429285431	2.5441582	A	2.1982353	A	1.27096376509302	0	lncRNA	22227-2_{3001..3223}	lnc-CAPN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CAPN3-1:1	chr15	 42706945	 42707167	+	lnc-CAPN3-1	lnc-CAPN3-1:1	ENSG00000258461.1	RP11-164J13.1	ZFP106	NA	chr15:42705021-42714515	inner
CUST_10529_PI429285431	0.91344154	A	1.0687971	A	0.897911050574536	0	lncRNA	12058-1_{1..1593}	lnc-ATP6V1B2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP6V1B2-5:2	chr8	 20826298	 20827890	+	lnc-ATP6V1B2-5	lnc-ATP6V1B2-5:2	XLOC_006734	linc-XPO7-4	NA	NA	NA	inter
CUST_10357_PI429285431	4.7521744	P	4.7162685	P	1.02520036686039	0	lncRNA	11883-1_{1..1170}	lnc-CTB-78H18.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTB-78H18.1.1-1:1	chr5	171169588	171170757	+	lnc-CTB-78H18.1.1-1	lnc-CTB-78H18.1.1-1:1	XLOC_004629	linc-EFCAB9-2	C5orf50	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70chr5:171159588-171180284"	NA	inter
CUST_18856_PI429285431	4.4221864	P	4.7157	P	0.815912529261705	0	lncRNA	20548-3_{6001..7032}	lnc-REXO1L2P-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-REXO1L2P-1:1	chr8	 86807313	 86808344	+	lnc-REXO1L2P-1	lnc-REXO1L2P-1:1	ENSG00000255694	AC232323.1	LOC100288562	"hg19_refFlat_REXO1L1:range=chr8:86787279-867893065'pad=0,hg19_refFlat_REXO1L1:range=chr8:86787279-867893065'pad=0 3'pad=0 strand=- repeatMasking=none,-105.00;hg19_refFlat_REXO1L1:range=chr8:86573699-865757265'pad=0,hg19_refFlat_REXO1L1:range=chr8:86573699-865757265'pad=0 3'pad=0 strand=- repeatMasking=none,-105.00chr8:86802465-86804650"	NA	inter
CUST_18299_PI429285431	1.5156212	A	1.2375721	A	1.2125540858512	0	lncRNA	20029-1_{1..563}	lnc-FES-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FES-2:2	chr15	 91573889	 91574451	+	lnc-FES-2	lnc-FES-2:2	ENSG00000214432	AC068831.10	SV2B	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50chr15:91575177-91583936"	NA	inter
LNCA_21_P0007108	8.036161	P	8.029038	P	1.0049494958544	0	lncRNA	TCONS_00018950	NA	NA	NA	NA	XLOC_008847	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008847), lincRNA [TCONS_00018950]"	chr10:72763410-72763351	hs|10q22.1	Agilent_HUMAN_G3V2	TCONS_00018950	TCONS_00018950	chr10	 72763351	 72763410	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22367_PI429285431	2.1202354	A	2.316345	A	0.872901275238082	0	lncRNA	23961-1_{1..556}	lnc-CTD-2517M22.14.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2517M22.14.1-1:1	chr8	145730755	145731310	-	lnc-CTD-2517M22.14.1-1	lnc-CTD-2517M22.14.1-1:1	ENSG00000255182.1	CTD-2517M22.14	MFSD3	"hg19_refFlat_GPT:range=chr8:145729688-1457323835'pad=0,hg19_refFlat_GPT:range=chr8:145729688-1457323835'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.80;hg19_refFlat_PPP1R16A:range=chr8:145722578-1457272865'pad=0,hg19_refFlat_PPP1R16A:range=chr8:145722578-1457272865'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.50chr8:145734552-145736589"	NA	inner
CUST_7106_PI429285431	3.3862107	P	3.0756757	A	1.24016751063524	0	lncRNA	7042-1_{1..407}	"transcript_id ""ENST00000563467.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563467.1"" | genecode_v17"	chrX	110755008	110755414	+	ENSG00000260802.1	ENST00000563467.1	RP6-170F5.2	RP6-170F5.2-002	NA	NA	NA	inter
CUST_50053_PI429285431	10.553407	P	9.845606	P	1.63331267359242	0	lncRNA	53789-1_{1..527}	hg19_lincRNAsTranscripts_TCONS_l2_00028203 range=chr8:57014015-57014848 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028203 range=chr8:57014015-57014848 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 57014015	 57014541	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45747_PI429285431	7.2480364	P	7.6580977	P	0.752591395476344	0	lncRNA	50096-1_{1..2175}	"gi|372266100|ref|NR_027017.2| Homo sapiens post-GPI attachment to proteins 2 (PGAP2), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|372266100|ref|NR_027017.2| Homo sapiens post-GPI attachment to proteins 2 (PGAP2), transcript variant 7, non-coding RNA"	Chr11	  3819189	  3821363	+	27315	NR_027017.2	NA	NA	NA	NA	NA	inter
CUST_5063_PI429285431	2.6622121	A	1.6644397	A	1.99691427355937	0	lncRNA	5003-1_{1..518}	"transcript_id ""ENST00000557687.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557687.1"" | genecode_v17"	chr14	104842867	104843384	-	ENSG00000258598.1	ENST00000557687.1	RP11-260M19.1	RP11-260M19.1-001	NA	NA	NA	inter
CUST_19475_PI429285431	1.4099782	A	1.5075419	A	0.934609948996887	0	lncRNA	21132-1_{1..349}	lnc-SETD4-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SETD4-5:1	chr21	 37105201	 37105549	-	lnc-SETD4-5	lnc-SETD4-5:1	ENSG00000230794.1	AF015720.3	NA	NA	NA	inter
CUST_34645_PI429285431	1.0091871	A	0.8961228	A	1.08152296519985	0	lncRNA	36098-1_{1..1018}	n341544|CR601187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4014|NULL|-1.1896000|-0.4021874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341544|CR601187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4014|NULL|-1.1896000|-0.4021874	chr8	 80868600	 80869617	-	NA	NA	NA	NA	MRPS28	NA	chr8:80858600-80879618	inner
CUST_27745_PI429285431	8.275584	P	8.053894	P	1.16609877666167	0	lncRNA	29327-1_{1..425}	n324962|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079673|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079673|-1.1378900|-0.2001023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324962|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079673|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079673|-1.1378900|-0.2001023	chr20	 48216305	 48216729	+	NA	NA	NA	NA	LOC728671	NA	chr20:48211006-48229439	inter
CUST_21937_PI429285431	10.509571	P	10.416163	P	1.06688745826569	0	lncRNA	23545-1_{1..1952}	lnc-ACHE-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACHE-1:2	chr7	100607771	100609722	-	lnc-ACHE-1	lnc-ACHE-1:2	ENSG00000225946.1	RP11-395B7.2	MUC12	NA	chr7:100612904-100619286	inter
CUST_2341_PI429285431	1.6656365	A	0.9733129	A	1.6158839612687	0	lncRNA	2333-1_{1..262}	"transcript_id ""ENST00000520192.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520192.1"" | genecode_v17"	chr5	123641923	123642184	-	ENSG00000253807.1	ENST00000520192.1	RP11-93O7.5	RP11-93O7.5-001	NA	NA	NA	inter
LNCA_21_P0002432	2.344546	A	2.0627422	A	1.21571394034341	0	lncRNA	TCONS_00004230	NA	NA	NA	NA	XLOC_002070	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002070), lincRNA [TCONS_00004230]"	chr2:43370064-43370005	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00004230	TCONS_00004230	chr2	 43370005	 43370064	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4925_PI429285431	0.888141	A	0.88392293	A	1.00292802163397	0	lncRNA	4868-1_{1..682}	"transcript_id ""ENST00000557195.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557195.1"" | genecode_v17"	chr14	 86401054	 86401735	+	ENSG00000258733.1	ENST00000557195.1	CTD-2341M24.1	CTD-2341M24.1-001	NA	NA	NA	inter
CUST_6159_PI429285431	0.9052754	A	0.9109879	A	0.996048225623564	0	lncRNA	6085-1_{1..620}	"transcript_id ""ENST00000601445.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601445.1"" | genecode_v17"	chr18	 39080968	 39081587	-	ENSG00000267313.2	ENST00000601445.1	RP11-142I20.1	RP11-142I20.1-007	NA	NA	NA	inter
CUST_47085_PI429285431	5.092103	P	2.999211	A	4.26602375728068	0	lncRNA	51168-3_{6001..9000}	"gi|224591393|ref|NR_027130.1| Homo sapiens zinc finger protein 738 (ZNF738), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224591393|ref|NR_027130.1| Homo sapiens zinc finger protein 738 (ZNF738), non-coding RNA"	Chr19	 21547735	 21550734	+	148203	NR_027130.1	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ISCA1:range=chr9:88880958-888973735'pad=0,hg19_refFlat_ISCA1:range=chr9:88880958-888973735'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_43614_PI429285431	4.1193223	P	4.364423	P	0.84375689990954	0	lncRNA	48377-1_{1..3000}	"gi|356995910|ref|NR_045515.1| Homo sapiens zinc finger and BTB domain containing 7B (ZBTB7B), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|356995910|ref|NR_045515.1| Homo sapiens zinc finger and BTB domain containing 7B (ZBTB7B), transcript variant 4, non-coding RNA"	Chr1	154975106	154978105	+	51043	NR_045515.1	NA	NA	NA	NA	NA	inter
CUST_34488_PI429285431	5.7999897	P	5.965393	P	0.891679218987282	0	lncRNA	35956-1_{1..674}	n341365|BC031308|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3834|NULL|-0.9635670|-0.2168295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341365|BC031308|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3834|NULL|-0.9635670|-0.2168295	chr7	151575680	151576353	+	NA	NA	NA	NA	PRKAG2	NA	chr7:151565680-151574316	inter
CUST_16309_PI429285431	1.9658084	A	1.5465637	A	1.33722728745694	0	lncRNA	18015-1_{1..693}	lnc-CTD-2368P22.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2368P22.1.1-1:1	chr19	 58487713	 58488405	+	lnc-CTD-2368P22.1.1-1	lnc-CTD-2368P22.1.1-1:1	XLOC_013178	linc-ZSCAN1-2	ZNF606	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50chr19:58488440-58498209"	NA	inter
CUST_18743_PI429285431	1.917817	A	2.4614925	A	0.686020931065444	0	lncRNA	20439-2_{3001..3080}	lnc-HSCB-1:20	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HSCB-1:20	chr22	 28398418	 28398497	+	lnc-HSCB-1	lnc-HSCB-1:20	ENSG00000235954	TTC28-AS1	TTC28	"hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0,hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0 3'pad=0 strand=- repeatMasking=none,-101.50chr22:28385418-28406711"	NA	inner
CUST_23700_PI429285431	3.882273	P	3.8865454	P	0.997042978611389	0	lncRNA	25265-1_{1..1011}	lnc-EN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EN1-1:1	chr2	119710166	119711176	-	lnc-EN1-1	lnc-EN1-1:1	ENSG00000259094.1	RP11-77A13.1	MARCO	NA	chr2:119700166-119720559	inner
CUST_29306_PI429285431	4.3511324	P	4.296255	P	1.03877082496377	0	lncRNA	31057-1_{1..840}	n332487|EF405809|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468782|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468782|1.9336300|-0.1121325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332487|EF405809|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468782|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468782|1.9336300|-0.1121325	chr15	 32404526	 32405365	+	NA	NA	NA	NA	CHRNA7	NA	chr15:32394526-32462384	inter
CUST_46424_PI429285431	3.3894072	P	3.7473893	P	0.78025516100045	0	lncRNA	50636-1_{1..1194}	"gi|336391102|ref|NR_038851.1| Homo sapiens uncharacterized LOC503519 (LOC503519), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|336391102|ref|NR_038851.1| Homo sapiens uncharacterized LOC503519 (LOC503519), non-coding RNA"	Chr15	 26360960	 26362153	+	503519	NR_038851.1	NA	NA	NA	NA	NA	inter
CUST_542_PI429285431	3.829161	P	4.1859255	P	0.780913955600024	0	lncRNA	534-1_{1..365}	"transcript_id ""ENST00000411431.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411431.1"" | genecode_v17"	chr1	202601556	202601920	+	ENSG00000225620.1	ENST00000411431.1	RP11-569A11.2	RP11-569A11.2-001	SYT2	NA	chr1:202591556-202612039	inner
CUST_14389_PI429285431	0.9202283	A	0.90434885	A	1.01106759363304	0	lncRNA	16051-1_{1..931}	lnc-HIST1H2BL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HIST1H2BL-1:1	chr6	 27635774	 27636704	-	lnc-HIST1H2BL-1	lnc-HIST1H2BL-1:1	XLOC_005659	linc-ZNF184	NA	NA	NA	inter
CUST_9780_PI429285431	2.118302	A	2.2790186	A	0.894580614070786	0	lncRNA	11297-1_{1..803}	lnc-ZKSCAN1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZKSCAN1-1:6	chr7	 99606205	 99607007	+	lnc-ZKSCAN1-1	lnc-ZKSCAN1-1:6	XLOC_006188	linc-ZKSCAN1-1	ZKSCAN1	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90chr7:99613219-99616730"	NA	inter
CUST_18175_PI429285431	3.057033	P	2.7634604	P	1.22567169966712	0	lncRNA	19911-1_{1..736}	lnc-C11orf89-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C11orf89-2:1	chr11	  2022448	  2023183	-	lnc-C11orf89-2	lnc-C11orf89-2:1	ENSG00000130600	H19	NA	NA	NA	inter
CUST_43811_PI429285431	0.8998326	A	0.8922889	A	1.00524258891291	0	lncRNA	48537-1_{1..3000}	"gi|300796059|ref|NR_034113.1| Homo sapiens DNAJC27 antisense RNA 1 (DNAJC27-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300796059|ref|NR_034113.1| Homo sapiens DNAJC27 antisense RNA 1 (DNAJC27-AS1), non-coding RNA"	Chr2	 25194981	 25197980	+	729723	NR_034113.1	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80"	NA	inter
CUST_48021_PI429285431	4.5318556	P	4.41525	P	1.08418097791408	0	lncRNA	51904-1_{1..3000}	"gi|410173575|ref|XR_172289.1| PREDICTED: Homo sapiens uncharacterized LOC400692 (LOC400692), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173575|ref|XR_172289.1| PREDICTED: Homo sapiens uncharacterized LOC400692 (LOC400692), misc_RNA"	NA	NA	NA	NA	NA	XR_172289.1	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10"	NA	Unknown
LNCA_19_P00316547	8.62014	P	8.835302	P	0.861449422260207	0	lncRNA	ENST00000505702	NA	NA	NA	NA	XLOC_003429	NA	ENST00000505702	NA	NA	"BROAD Institute lincRNA (XLOC_003429), lincRNA [TCONS_00007462]"	chr4:3634838-3634897	hs|4p16.3	Agilent_HUMAN_G3V2	ENST00000505702	ENST00000505702	chr4	  3634838	  3634897	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5627_PI429285431	1.2270665	A	0.89969	A	1.25472960847521	0	lncRNA	5555-1_{1..335}	"transcript_id ""ENST00000569677.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569677.1"" | genecode_v17"	chr16	 79246608	 79246942	-	ENSG00000261722.1	ENST00000569677.1	RP11-679B19.2	RP11-679B19.2-001	WWOX	NA	chr16:79236608-79246564	inter
CUST_36194_PI429285431	0.8936897	A	0.8902963	A	1.00235489406016	0	lncRNA	37455-2_{3001..6000}	n344744|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_293|NULL|-1.3219500|-0.2905813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344744|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_293|NULL|-1.3219500|-0.2905813	chr13	109885818	109888817	-	NA	NA	NA	NA	NA	"hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40"	NA	inter
CUST_3662_PI429285431	0.90525484	A	1.2615503	A	0.781167882742711	0	lncRNA	3631-1_{1..428}	"transcript_id ""ENST00000419779.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419779.1"" | genecode_v17"	chr10	 38453576	 38454003	+	ENSG00000241125.1	ENST00000419779.1	RP11-508N22.9	RP11-508N22.9-001	NA	NA	NA	inter
LNCA_21_P0008368	0.92312884	A	0.923608	A	0.999667926745495	0	lncRNA	TCONS_00022582	NA	NA	NA	NA	XLOC_010896	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010896), lincRNA [TCONS_00022582]"	chr14:87646672-87646731	hs|14q31.3	Agilent_HUMAN_G3V2	TCONS_00022582	TCONS_00022582	chr14	 87646672	 87646731	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2254_PI429285431	0.9153689	A	0.91618717	A	0.999432979273609	0	lncRNA	2246-1_{1..597}	"transcript_id ""ENST00000510153.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510153.1"" | genecode_v17"	chr5	 90522292	 90522888	-	ENSG00000251093.1	ENST00000510153.1	RP11-414H23.3	RP11-414H23.3-001	NA	NA	NA	inter
CUST_6669_PI429285431	0.8981298	A	0.8901113	A	1.00557347500854	0	lncRNA	6615-1_{1..534}	"transcript_id ""ENST00000457224.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457224.1"" | genecode_v17"	chr20	 24123226	 24123759	-	ENSG00000236151.1	ENST00000457224.1	RP5-1100I6.1	RP5-1100I6.1-001	NA	NA	NA	inter
CUST_49741_PI429285431	1.1256602	A	0.9157318	A	1.15663077966078	0	lncRNA	53512-1_{1..2077}	hg19_lincRNAsTranscripts_TCONS_l2_00026538 range=chr7:45763401-45809067 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026538 range=chr7:45763401-45809067 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 45763401	 45765477	-	NA	NA	NA	NA	ADCY1	NA	chr7:45753401-45762715	inter
CUST_17399_PI429285431	4.074383	P	3.871838	P	1.15072651570061	0	lncRNA	19121-1_{1..366}	lnc-ALX4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALX4-1:1	chr11	 44542221	 44542586	-	lnc-ALX4-1	lnc-ALX4-1:1	XLOC_009426	linc-ALX4-2	NA	NA	NA	inter
CUST_35412_PI429285431	1.0725348	A	0.9900888	A	1.0588116691813	0	lncRNA	36822-1_{1..496}	n342473|Z14219|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4967|NULL|1.0972900|-0.1927436	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342473|Z14219|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4967|NULL|1.0972900|-0.1927436	chr16	 31972892	 31973387	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30758_PI429285431	4.086129	P	3.2511868	P	1.78378557198924	0	lncRNA	32543-1_{1..915}	n336582|Z22828|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326662|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326662|3.1744100|-0.1982223	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336582|Z22828|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326662|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326662|3.1744100|-0.1982223	chr6	170863462	170864376	+	NA	NA	NA	NA	PDCD2	NA	chr6:170884660-170886102	inner
LNCA_21_P0012489	1.6088718	A	3.0555565	P	0.366863505045507	0	lncRNA	ENST00000435651	NA	NA	NA	NA	XLOC_l2_009613	NA	ENST00000435651	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009613), lincRNA [TCONS_l2_00019754]"	chr3:6407513-6407572	hs|3p26.1	Agilent_HUMAN_G3V2	ENST00000435651	ENST00000435651	chr3	  6407513	  6407572	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22395_PI429285431	0.92227036	A	0.9013022	A	1.0146401534222	0	lncRNA	23985-1_{1..540}	lnc-HAO2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HAO2-2:3	chr1	119684370	119684909	+	lnc-HAO2-2	lnc-HAO2-2:3	ENSG00000231365.1	RP11-418J17.1	WARS2	NA	chr1:119674370-119683295	inter
CUST_25122_PI429285431	4.9515185	P	4.3594227	P	1.50743500519521	0	lncRNA	26660-1_{1..377}	lnc-GAS8-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GAS8-1:5	chr16	 90285667	 90286043	+	lnc-GAS8-1	lnc-GAS8-1:5	ENSG00000260923.1	AC137934.1	NA	NA	NA	inter
CUST_3494_PI429285431	0.8962396	A	0.90870684	A	0.99139559932426	0	lncRNA	3465-1_{1..580}	"transcript_id ""ENST00000580908.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580908.1"" | genecode_v17"	chr9	 98787998	 98788577	-	ENSG00000225194.2	ENST00000580908.1	LINC00092	LINC00092-003	NA	NA	NA	inter
CUST_49421_PI429285431	2.5061498	A	1.5446286	A	1.9473621414828	0	lncRNA	53225-1_{1..2421}	hg19_lincRNAsTranscripts_TCONS_l2_00023268 range=chr5:175602430-175609133 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023268 range=chr5:175602430-175609133 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175602430	175604850	-	NA	NA	NA	NA	NA	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70"	NA	inter
CUST_12200_PI429285431	0.8921165	A	0.9000174	A	0.994538482056023	0	lncRNA	13799-1_{1..251}	lnc-AC007557.1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC007557.1.1-4:1	chr2	218182592	218182842	+	lnc-AC007557.1.1-4	lnc-AC007557.1.1-4:1	XLOC_001864	linc-RUFY4-2	NA	NA	NA	inter
CUST_196_PI429285431	0.90199375	A	1.6110234	A	0.611731448245858	0	lncRNA	186-1_{1..2148}	"transcript_id ""ENST00000417651.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000417651.1"" | genecode_v17"	chr1	 29656132	 29658279	-	ENSG00000230523.1	ENST00000417651.1	RP3-437I16.1	RP3-437I16.1-001	PTPRU	NA	chr1:29646132-29653325	inter
LNCA_21_P0013105	3.215438	P	2.7405372	A	1.38982265207279	0	lncRNA	ENST00000454588	NA	NA	NA	NA	XLOC_l2_013149	NA	ENST00000454588	THC2699591	NA	"BROAD Institute lincRNA (XLOC_l2_013149), lincRNA [TCONS_l2_00025502]"	chr6:143360777-143360718	hs|6q24.2	Agilent_HUMAN_G3V2	ENST00000454588	ENST00000454588	chr6	143360718	143360777	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7236_PI429285431	5.159158	P	5.687978	P	0.693121415758554	0	lncRNA	7823-1_{1..275}	"transcript_id ""ENST00000516005.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516005.1"" | genecode_v17"	chr6	117620527	117620801	+	ENSG00000251814.1	ENST00000516005.1	RN7SKP18	RN7SKP18-201	ROS1	NA	chr6:117610527-117630801	inner
CUST_52178_PI429285431	10.566586	P	10.098387	P	1.3833814343524	0	lncRNA	55697-3_{6001..7125}	hg19_lincRNAsTranscripts_TCONS_l2_00017651 range=chr22:24647047-24658668 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017651 range=chr22:24647047-24658668 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 24653047	 24654171	+	NA	NA	NA	NA	SPECC1L	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0,hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80chr22:24653368-24668668"	NA	inter
CUST_17839_PI429285431	0.89149314	A	0.9253039	A	0.976836653368043	0	lncRNA	19574-1_{1..903}	lnc-UNC5D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UNC5D-1:1	chr8	 34950656	 34951558	+	lnc-UNC5D-1	lnc-UNC5D-1:1	XLOC_006771	linc-UNC5D-1	NA	NA	NA	inter
CUST_48150_PI429285431	1.8371896	A	0.9226583	A	1.8849565912662	0	lncRNA	52016-2_{3001..3173}	"gi|410169909|ref|XR_172429.1| PREDICTED: Homo sapiens uncharacterized LOC283575 (LOC283575), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|410169909|ref|XR_172429.1| PREDICTED: Homo sapiens uncharacterized LOC283575 (LOC283575), misc_RNA"	NA	NA	NA	NA	NA	XR_172429.1	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60"	NA	Unknown
LNCA_21_P0002882	0.92109	A	0.92342144	A	0.998385274012444	0	lncRNA	ENST00000459861	NA	NA	NA	NA	XLOC_003263	NA	ENST00000459861	NA	NA	"BROAD Institute lincRNA (XLOC_003263), lincRNA [TCONS_00005833]"	chr3:135092703-135092644	hs|3q22.2	Agilent_HUMAN_G3V2	ENST00000459861	ENST00000459861	chr3	135092644	135092703	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20955_PI429285431	0.9192926	A	0.9081985	A	1.00771948692135	0	lncRNA	22586-1_{1..452}	lnc-M6PR-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-M6PR-3:1	chr12	  8983258	  8983709	-	lnc-M6PR-3	lnc-M6PR-3:1	ENSG00000256661.1	A2ML1-AS1	A2ML1	NA	chr12:8975150-8993543	inner
CUST_32751_PI429285431	1.4511747	A	1.3753866	A	1.05393661193865	0	lncRNA	34388-1_{1..523}	n339379|AF085898|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1811|NULL|-0.7148320|-0.1347474	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339379|AF085898|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1811|NULL|-0.7148320|-0.1347474	chr3	 57995877	 57996399	+	NA	NA	NA	NA	FLNB	NA	chr3:57994127-58006391	inner
CUST_23955_PI429285431	6.794002	P	6.6270566	P	1.12267893254676	0	lncRNA	25511-1_{1..950}	lnc-DLX2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DLX2-4:2	chr2	173420817	173421766	-	lnc-DLX2-4	lnc-DLX2-4:2	ENSG00000225205.1	AC093818.1	PDK1	"hg19_refFlat_PDK3:range=chrX:24483573-245572815'pad=0,hg19_refFlat_PDK3:range=chrX:24483573-245572815'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_PDK1:range=chr2:173420879-1734606975'pad=0,hg19_refFlat_PDK1:range=chr2:173420879-1734606975'pad=0 3'pad=0 strand=+ repeatMasking=none,-111.50;hg19_refFlat_PDK3:range=chrX:24483573-245521895'pad=0,hg19_refFlat_PDK3:range=chrX:24483573-245521895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10chr2:173420779-173431257"	NA	inner
CUST_6891_PI429285431	1.2377694	A	1.1394043	A	1.07055958856046	0	lncRNA	6841-1_{1..413}	"transcript_id ""ENST00000451543.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451543.1"" | genecode_v17"	chr21	 44881992	 44882404	-	ENSG00000185186.4	ENST00000451543.1	LINC00313	LINC00313-003	NA	NA	NA	inter
CUST_4052_PI429285431	2.6593788	A	3.7253416	P	0.477653784371141	0	lncRNA	4014-1_{1..546}	"transcript_id ""ENST00000506309.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506309.2"" | genecode_v17"	chr11	 93971316	 93971861	+	ENSG00000250519.2	ENST00000506309.2	RP11-680H20.2	RP11-680H20.2-001	NA	NA	NA	inter
CUST_4905_PI429285431	0.90503347	A	0.9064342	A	0.999029559132374	0	lncRNA	4847-1_{1..469}	"transcript_id ""ENST00000554043.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554043.1"" | genecode_v17"	chr14	 77514515	 77514983	-	ENSG00000258473.1	ENST00000554043.1	RP11-7F17.4	RP11-7F17.4-001	NA	NA	NA	inter
LNCA_21_P0013660	0.91887724	A	0.9161945	A	1.00186126367207	0	lncRNA	TCONS_l2_00029375	NA	NA	NA	NA	XLOC_l2_015219	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015219), lincRNA [TCONS_l2_00029375]"	chr9:69494752-69494693	hs|9q21.11	Agilent_HUMAN_G3V2	TCONS_l2_00029375	TCONS_l2_00029375	chr9	 69494693	 69494752	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1771_PI429285431	0.8982943	A	1.7241338	A	0.564153827419633	0	lncRNA	1757-1_{1..529}	"transcript_id ""ENST00000602927.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602927.1"" | genecode_v17"	chr4	 57253791	 57254319	+	ENSG00000269921.1	ENST00000602927.1	RP11-646I6.5	RP11-646I6.5-001	PPAT	NA	chr4:57259528-57264319	inter
CUST_14891_PI429285431	0.92668605	A	0.93948996	A	0.991164272394429	0	lncRNA	16555-1_{1..299}	lnc-TACC2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TACC2-2:1	chr10	123499163	123499461	+	lnc-TACC2-2	lnc-TACC2-2:1	XLOC_008649	linc-TACC2-1	ATE1	NA	chr10:123502625-123509245	inter
LNCA_21_P0012798	0.91674757	A	0.9126044	A	1.00287595424845	0	lncRNA	ENST00000503208	NA	NA	NA	NA	XLOC_l2_011281	NA	ENST00000503208	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011281), lincRNA [TCONS_l2_00021998]"	chr4:138969122-138953639	hs|4q28.3	Agilent_HUMAN_G3V2	ENST00000503208	ENST00000503208	chr4	138953639	138969122	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42469_PI429285431	2.0939445	A	3.2849977	P	0.437983006424078	0	lncRNA	45221-1_{1..133}	ENST00000516190 ncrna:snoRNA chromosome:GRCh37:7:32831426:32831558:1 gene:ENSG00000251999 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516190 ncrna:snoRNA chromosome:GRCh37:7:32831426:32831558:1 gene:ENSG00000251999 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 32831426	 32831558	+	ENSG00000251999	ENST00000516190	NA	NA	NA	NA	NA	inter
CUST_52141_PI429285431	9.367817	P	9.783667	P	0.749577731980105	0	lncRNA	55665-1_{1..576}	hg19_lincRNAsTranscripts_TCONS_l2_00017901 range=chr22:20982081-21011209 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017901 range=chr22:20982081-21011209 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 20982081	 20982656	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17055_PI429285431	3.435663	P	3.3772645	P	1.04130918750355	0	lncRNA	18764-1_{1..315}	lnc-HELZ-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HELZ-1:1	chr17	 65040410	 65040724	-	lnc-HELZ-1	lnc-HELZ-1:1	XLOC_012552	linc-APOH	CACNG1	NA	chr17:65040652-65050458	inter
CUST_13871_PI429285431	1.191734	A	1.1210909	A	1.0501847127378	0	lncRNA	15515-1_{1..396}	lnc-ZNF664-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF664-1:1	chr12	124559470	124559865	+	lnc-ZNF664-1	lnc-ZNF664-1:1	XLOC_009925	linc-FAM101A-4	ZNF664-FAM101A	NA	chr12:124549470-124569839	inner
LNCA_21_P0012028	0.91176	A	0.9057128	A	1.00420039667094	0	lncRNA	ENST00000414256	NA	NA	NA	NA	XLOC_l2_007586	NA	ENST00000414256	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007586), lincRNA [TCONS_l2_00015509]"	chr2:145647719-145647778	hs|2q22.3	Agilent_HUMAN_G3V2	ENST00000414256	ENST00000414256	chr2	145647719	145647778	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43897_PI429285431	4.5936604	P	4.285266	P	1.23832877548111	0	lncRNA	48612-1_{1..3000}	"gi|385275070|ref|NR_047658.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385275070|ref|NR_047658.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 7, non-coding RNA"	Chr2	 97258892	 97261891	-	55683	NR_047658.1	NA	NA	NA	NA	NA	inter
CUST_3795_PI429285431	0.89140624	A	2.2529178	A	0.389174325150295	0	lncRNA	3763-1_{1..712}	"transcript_id ""ENST00000597243.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597243.1"" | genecode_v17"	chr10	109631340	109632051	-	ENSG00000229981.2	ENST00000597243.1	RP11-215N21.1	RP11-215N21.1-010	LOC100128304	NA	chr10:109673555-109675061	inter
CUST_4952_PI429285431	1.2464433	A	0.88649994	A	1.28337551143567	0	lncRNA	4896-1_{1..559}	"transcript_id ""ENST00000557622.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557622.1"" | genecode_v17"	chr14	 91033839	 91034397	+	ENSG00000258935.1	ENST00000557622.1	RP11-1078H9.2	RP11-1078H9.2-001	TTC7B	NA	chr14:91023839-91046320	inner
CUST_49657_PI429285431	3.2716537	P	3.656868	P	0.765665257079287	0	lncRNA	53438-3_{6001..7990}	hg19_lincRNAsTranscripts_TCONS_l2_00026845 range=chr7:112586295-112635753 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026845 range=chr7:112586295-112635753 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	112592295	112594284	-	NA	NA	NA	NA	C7orf60	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90chr7:112576295-112579932"	NA	inter
CUST_35028_PI429285431	2.929203	P	3.4852529	P	0.680161900326176	0	lncRNA	36441-1_{1..390}	n341971|BC021185|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4452|NULL|1.7835800|-0.3560085	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341971|BC021185|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4452|NULL|1.7835800|-0.3560085	chr12	 78169567	 78169956	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34956_PI429285431	0.90213656	A	0.9050323	A	0.997994839010075	0	lncRNA	36373-1_{1..2077}	n341874|AK126282|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4354|NULL|-1.0348200|-0.3422415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341874|AK126282|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4354|NULL|-1.0348200|-0.3422415	chr6	 49689643	 49691719	+	NA	NA	NA	NA	CRISP2	NA	chr6:49679643-49681299	inter
CUST_51757_PI429285431	1.1745837	A	1.1853169	A	0.992587918652958	0	lncRNA	55310-1_{1..561}	hg19_lincRNAsTranscripts_TCONS_l2_00012439 range=chr19:28427333-28447120 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012439 range=chr19:28427333-28447120 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 28427333	 28427893	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007248	4.406907	P	4.98208	P	0.67120575928647	0	lncRNA	THC2671596	NA	NA	NA	NA	XLOC_009233	NA	NA	THC2671596	NA	"BROAD Institute lincRNA (XLOC_009233), lincRNA [TCONS_00019413]"	NA	NA	Agilent_HUMAN_G3V2	THC2671596	THC2671596	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9421_PI429285431	0.90242606	A	0.89305246	A	1.0065184375519	0	lncRNA	10925-1_{1..533}	lnc-HOXC4-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOXC4-4:2	chr12	 54538614	 54539146	+	lnc-HOXC4-4	lnc-HOXC4-4:2	XLOC_009765	linc-HNRNPA1-3	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_49961_PI429285431	0.8936209	A	0.8857454	A	1.00547380745823	0	lncRNA	53710-1_{1..2202}	hg19_lincRNAsTranscripts_TCONS_l2_00026933 range=chr7:141968212-141972326 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026933 range=chr7:141968212-141972326 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	141968212	141970413	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003569	3.2751064	P	3.3124506	P	0.974447118335227	0	lncRNA	TCONS_00007979	NA	NA	NA	NA	XLOC_003449	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003449), lincRNA [TCONS_00007979]"	chr4:10072966-10073025	hs|4p16.1	Agilent_HUMAN_G3V2	TCONS_00007979	TCONS_00007979	chr4	 10072966	 10073025	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51719_PI429285431	5.2648935	P	5.555848	P	0.817361106177144	0	lncRNA	55276-1_{1..889}	hg19_lincRNAsTranscripts_TCONS_l2_00011974 range=chr18:11629494-11636495 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011974 range=chr18:11629494-11636495 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 11629494	 11630382	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49750_PI429285431	4.7073073	P	4.453106	P	1.19267527533145	0	lncRNA	53519-1_{1..1397}	hg19_lincRNAsTranscripts_TCONS_l2_00027342 range=chr7:45765191-45808617 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027342 range=chr7:45765191-45808617 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 45765191	 45766587	-	NA	NA	NA	NA	ADCY1	NA	chr7:45755191-45762715	inter
CUST_37078_PI429285431	0.9049794	A	0.89649135	A	1.00590080951625	0	lncRNA	38206-1_{1..406}	n345523|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1072|NULL|-1.5271600|-0.2071855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345523|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1072|NULL|-1.5271600|-0.2071855	chr2	 46762834	 46763239	+	NA	NA	NA	NA	RHOQ	NA	chr2:46769867-46778609	inter
CUST_15966_PI429285431	0.88791054	A	0.8857808	A	1.00147731343028	0	lncRNA	17664-1_{1..233}	lnc-SLITRK5-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK5-4:1	chr13	 88524991	 88525223	+	lnc-SLITRK5-4	lnc-SLITRK5-4:1	XLOC_010465	linc-GPC5-6	NA	NA	NA	inter
LNCA_21_P0011943	0.90334517	A	0.89503235	A	1.00577864004193	0	lncRNA	TCONS_l2_00014767	NA	NA	NA	NA	XLOC_l2_008190	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008190), lincRNA [TCONS_l2_00014767]"	chr2:108783680-108783621	hs|2q12.3	Agilent_HUMAN_G3V2	TCONS_l2_00014767	TCONS_l2_00014767	chr2	108783621	108783680	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1787_PI429285431	3.9723961	P	4.264918	P	0.816473575494783	0	lncRNA	1773-1_{1..558}	"transcript_id ""ENST00000504537.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504537.1"" | genecode_v17"	chr4	 60416860	 60417417	-	ENSG00000249392.1	ENST00000504537.1	RP11-725D20.1	RP11-725D20.1-001	NA	NA	NA	inter
CUST_41209_PI429285431	1.7379274	A	1.5604558	A	1.13090018464694	0	lncRNA	42091-1_{1..73}	ENST00000581683 ncrna:miRNA chromosome:GRCh37:5:72174418:72174490:1 gene:ENSG00000263593 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581683 ncrna:miRNA chromosome:GRCh37:5:72174418:72174490:1 gene:ENSG00000263593 gene_biotype:miRNA transcript_biotype:miRNA	chr5	 72174418	 72174490	+	ENSG00000263593	ENST00000581683	NA	NA	TNPO1	NA	chr5:72164418-72184490	inner
CUST_19598_PI429285431	2.2551296	A	1.3435239	A	1.88113801482021	0	lncRNA	21254-1_{1..500}	lnc-LRRC31-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC31-1:3	chr3	169683766	169684265	-	lnc-LRRC31-1	lnc-LRRC31-1:3	ENSG00000239219.1	RP11-379K17.4	SEC62	NA	chr3:169684580-169694028	inter
LNCA_24_P196384	2.608042	A	1.161382	A	2.72576275824208	0	lncRNA	XR_132594	XR_132594	XR_132594	100129502	Hs.6734	LOC100129502	uncharacterized LOC100129502	NA	THC2473738	NA	"PREDICTED: Homo sapiens hypothetical LOC100129502 (LOC100129502), miscRNA [XR_132594]"	chr15:90440348-90440289	hs|15q26.1	Agilent_HUMAN_G3V2	XR_132594	XR_132594	chr15	 90440289	 90440348	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42172_PI429285431	1.9937513	A	0.88483655	A	2.15683341061776	0	lncRNA	44221-1_{1..93}	ENST00000408276 ncrna:miRNA chromosome:GRCh37:1:68649201:68649293:-1 gene:ENSG00000221203 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408276 ncrna:miRNA chromosome:GRCh37:1:68649201:68649293:-1 gene:ENSG00000221203 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 68649201	 68649293	-	ENSG00000221203	ENST00000408276	NA	NA	WLS	NA	chr1:68639201-68659293	inner
CUST_10505_PI429285431	3.2267876	P	2.6998897	A	1.44082777737654	0	lncRNA	12031-1_{1..843}	lnc-CYB5D2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CYB5D2-1:3	chr17	  4063486	  4064328	+	lnc-CYB5D2-1	lnc-CYB5D2-1:3	XLOC_012083	linc-SPNS3	ANKFY1	NA	chr17:4066665-4073996	inter
CUST_36641_PI429285431	6.7988586	P	7.0513597	P	0.83943987457021	0	lncRNA	37831-1_{1..582}	n345135|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_684|NULL|-1.3191000|-0.1159368	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345135|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_684|NULL|-1.3191000|-0.1159368	chr11	 12108437	 12109018	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003529	0.9059386	A	0.8969954	A	1.00621820714253	0	lncRNA	ENST00000502566	NA	NA	NA	NA	XLOC_004138	NA	ENST00000502566	NA	NA	"BROAD Institute lincRNA (XLOC_004138), lincRNA [TCONS_00007889]"	chr4:159412034-159411975	hs|4q32.1	Agilent_HUMAN_G3V2	ENST00000502566	ENST00000502566	chr4	159411975	159412034	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51053_PI429285431	4.657142	P	4.121687	P	1.44939919684954	0	lncRNA	54694-4_{9001..12000}	hg19_lincRNAsTranscripts_TCONS_l2_00006731 range=chr13:23474438-23493355 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006731 range=chr13:23474438-23493355 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 23483438	 23486437	+	NA	NA	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_28078_PI429285431	0.9222304	A	0.9150155	A	1.00501351340324	0	lncRNA	29698-1_{1..1109}	n325347|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325418|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325418|3.3978500|-0.2423035	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325347|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325418|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325418|3.3978500|-0.2423035	chr2	 34756149	 34757257	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36631_PI429285431	6.1696787	P	6.3260164	P	0.897299989867597	0	lncRNA	37824-1_{1..570}	n345127|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_676|NULL|-1.3101400|-0.4134990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345127|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_676|NULL|-1.3101400|-0.4134990	chr10	116751174	116751743	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001666	10.241999	P	10.200042	P	1.02950939811063	0	lncRNA	TCONS_00001956	NA	NA	NA	NA	XLOC_000090	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000090), lincRNA [TCONS_00001956]"	chr1:22584374-22584433	hs|1p36.12	Agilent_HUMAN_G3V2	TCONS_00001956	TCONS_00001956	chr1	 22584374	 22584433	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29751_PI429285431	3.8297324	P	5.788587	P	0.257232600494568	0	lncRNA	31513-1_{1..487}	n333433|BC015495|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000088716|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000088716|-1.0972900|-0.1103875	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333433|BC015495|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000088716|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000088716|-1.0972900|-0.1103875	chr7	142552869	142553355	+	NA	NA	NA	NA	EPHB6	NA	chr7:142552792-142568847	inner
CUST_42343_PI429285431	0.8945498	A	0.89469045	A	0.999902513601162	0	lncRNA	45002-1_{1..86}	ENST00000516543 ncrna:snoRNA chromosome:GRCh37:17:67351274:67351359:-1 gene:ENSG00000252352 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516543 ncrna:snoRNA chromosome:GRCh37:17:67351274:67351359:-1 gene:ENSG00000252352 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 67351274	 67351359	-	ENSG00000252352	ENST00000516543	NA	NA	MAP2K6	NA	chr17:67341274-67361359	inter
CUST_26248_PI429285431	0.90921235	A	1.0868051	A	0.884177085051078	0	lncRNA	27755-1_{1..2656}	lnc-VGLL3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VGLL3-4:1	chr3	 86077034	 86079689	-	lnc-VGLL3-4	lnc-VGLL3-4:1	ENSG00000239519.1	CADM2-AS1	CADM2	NA	chr3:86067034-86087157	inner
LNCA_21_P0012699	0.9149048	A	1.2322868	A	0.80252486626303	0	lncRNA	THC2770561	NA	NA	NA	NA	XLOC_l2_011407	NA	NA	THC2770561	NA	"BROAD Institute lincRNA (XLOC_l2_011407), lincRNA [TCONS_l2_00021467]"	chr4:187333680-187333621	hs|4q35.2	Agilent_HUMAN_G3V2	THC2770561	THC2770561	chr4	187333621	187333680	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45230_PI429285431	1.2404196	A	0.9040715	A	1.2625566307509	0	lncRNA	49687-1_{1..1497}	"gi|310120230|ref|XR_108904.1| PREDICTED: Homo sapiens uncharacterized LOC100507258 (LOC100507258), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120230|ref|XR_108904.1| PREDICTED: Homo sapiens uncharacterized LOC100507258 (LOC100507258), misc_RNA"	Chr8	 86132766	 86134262	+	100507258	XR_108904.2	NA	NA	NA	NA	NA	inter
CUST_31866_PI429285431	0.91083026	A	0.9558448	A	0.969280048132567	0	lncRNA	33598-1_{1..598}	n338417|BC038792|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|814|NULL|-1.1857100|-0.4202938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n338417|BC038792|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|814|NULL|-1.1857100|-0.4202938	chr14	 77514514	 77515111	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13254_PI429285431	6.823713	P	7.1762466	P	0.783207453650549	0	lncRNA	14884-2_{3001..3365}	lnc-CHST12-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHST12-1:3	chr7	  2486258	  2486622	+	lnc-CHST12-1	lnc-CHST12-1:3	XLOC_005968	linc-LFNG	CHST12	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-30.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70chr7:2473258-2474240"	NA	inter
CUST_44440_PI429285431	6.363102	P	6.4768333	P	0.924194686428624	0	lncRNA	49050-2_{3001..4345}	"gi|306774096|ref|NR_036614.1| Homo sapiens doublecortin-like kinase 2 (DCLK2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|306774096|ref|NR_036614.1| Homo sapiens doublecortin-like kinase 2 (DCLK2), transcript variant 3, non-coding RNA"	Chr4	151002426	151003770	+	166614	NR_036614.1	NA	NA	NA	NA	NA	inter
CUST_38434_PI429285431	1.5773121	A	1.7119875	A	0.910874753326802	0	lncRNA	39462-1_{1..3000}	n382643|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002baz.2||1.7861900|-0.1938776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382643|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002baz.2||1.7861900|-0.1938776	chr15	 76025203	 76028202	-	NA	NA	NA	NA	LOC100652820	"hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chr15:76030311-76031568"	NA	inter
LNCA_21_P0004202	7.2703085	P	7.1187387	P	1.11077745440732	0	lncRNA	TCONS_00009841	NA	NA	NA	NA	XLOC_004256	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004256), lincRNA [TCONS_00009841]"	chr5:2918887-2918946	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00009841	TCONS_00009841	chr5	  2918887	  2918946	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24914_PI429285431	0.90572613	A	1.0943964	A	0.877414060047593	0	lncRNA	26455-1_{1..685}	lnc-ALPK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALPK1-1:1	chr4	113438964	113439648	+	lnc-ALPK1-1	lnc-ALPK1-1:1	ENSG00000249509.1	RP11-402J6.1	NEUROG2	"hg19_refFlat_NEUROG2:range=chr4:113435813-1134366315'pad=0,hg19_refFlat_NEUROG2:range=chr4:113435813-1134366315'pad=0 3'pad=0 strand=- repeatMasking=none,-100.10chr4:113434672-113437328"	NA	inter
CUST_39431_PI429285431	7.1041856	P	7.811157	P	0.612604810115457	0	lncRNA	40381-11_{30001..33000}	n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	chr13	 19438542	 19441541	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_37235_PI429285431	0.91121876	A	0.9175227	A	0.995639974392661	0	lncRNA	38344-1_{1..619}	n345667|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1216|NULL|-1.3234000|-0.3787322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345667|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1216|NULL|-1.3234000|-0.3787322	chr5	 32623234	 32623852	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48264_PI429285431	0.90985906	A	0.902895	A	1.00483878785984	0	lncRNA	52127-1_{1..735}	hg19_lincRNAsTranscripts_TCONS_l2_00000055 range=chr1:2509305-2516050 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000055 range=chr1:2509305-2516050 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	  2509305	  2510039	+	NA	NA	NA	NA	MMEL1	NA	chr1:2522081-2526050	inter
CUST_6418_PI429285431	0.91294295	A	0.9132139	A	0.999812209406289	0	lncRNA	6357-1_{1..575}	"transcript_id ""ENST00000587777.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587777.1"" | genecode_v17"	chr19	 28785000	 28785574	-	ENSG00000266928.1	ENST00000587777.1	CTB-70G10.1	CTB-70G10.1-001	NA	NA	NA	inter
CUST_24893_PI429285431	1.3501205	A	1.4159502	A	0.955395707468304	0	lncRNA	26434-1_{1..517}	lnc-CEP170-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CEP170-5:1	chr1	243957562	243958078	-	lnc-CEP170-5	lnc-CEP170-5:1	ENSG00000228939.1	AKT3-IT1	AKT3	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70chr1:243947562-243967702"	NA	inner
CUST_15390_PI429285431	0.90438277	A	0.89796305	A	1.00445972592747	0	lncRNA	17074-1_{1..240}	lnc-TYRP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TYRP1-2:1	chr9	 11277792	 11278031	+	lnc-TYRP1-2	lnc-TYRP1-2:1	XLOC_007281	linc-TYRP1-2	NA	NA	NA	inter
LNCA_21_P0014863	6.316431	P	6.083808	P	1.17496924946243	0	lncRNA	XR_132753	XR_132753	XR_132753	NA	Hs.729192	LOC100653021	uncharacterized LOC100653021	ENST00000553842	THC2657614	NA	"PREDICTED: Homo sapiens hypothetical LOC100653021 (LOC100653021), miscRNA [XR_132753]"	chr14:102302791-102302850	hs|14q32.31	Agilent_HUMAN_G3V2	XR_132753	XR_132753	chr14	102302791	102302850	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49765_PI429285431	3.0064769	P	3.2939978	P	0.819308734314898	0	lncRNA	53528-3_{6001..7843}	hg19_lincRNAsTranscripts_TCONS_l2_00026562 range=chr7:51453002-51461071 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026562 range=chr7:51453002-51461071 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 51459002	 51460844	-	NA	NA	NA	NA	LOC100131871	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20chr7:51459730-51460910"	NA	inter
CUST_1465_PI429285431	1.4384273	A	2.2027373	A	0.588734876430016	0	lncRNA	1454-1_{1..294}	"transcript_id ""ENST00000482019.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000482019.1"" | genecode_v17"	chr3	134032418	134032711	+	ENSG00000240006.1	ENST00000482019.1	RP11-200A1.1	RP11-200A1.1-001	NA	NA	NA	inter
CUST_19341_PI429285431	2.1669407	A	1.5597016	A	1.52334118438926	0	lncRNA	21007-1_{1..1062}	lnc-ZNF117-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF117-1:1	chr7	 64349830	 64350891	-	lnc-ZNF117-1	lnc-ZNF117-1:1	ENSG00000189316.3	RP11-797H7.5	LOC441239	NA	chr7:64348715-64350478	inter
CUST_44367_PI429285431	0.90858495	A	0.9573734	A	0.966747846018957	0	lncRNA	48986-1_{1..664}	"gi|310119378|ref|XR_108555.1| PREDICTED: Homo sapiens uncharacterized LOC100506048, transcript variant 2 (LOC100506048), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310119378|ref|XR_108555.1| PREDICTED: Homo sapiens uncharacterized LOC100506048, transcript variant 2 (LOC100506048), misc_RNA"	NA	NA	NA	NA	NA	XR_108555.1	NA	NA	NA	NA	NA	Unknown
CUST_50645_PI429285431	1.2963146	A	0.8966418	A	1.3192086832711	0	lncRNA	54326-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00002970 range=chr10:37524718-37540653 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002970 range=chr10:37524718-37540653 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 37524718	 37527717	+	NA	NA	NA	NA	ANKRD30A	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80chr10:37514718-37521495"	NA	inter
CUST_50113_PI429285431	3.7225492	P	3.6931217	P	1.02060704115205	0	lncRNA	53843-1_{1..851}	hg19_lincRNAsTranscripts_TCONS_l2_00028804 range=chr9:69065867-69106228 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028804 range=chr9:69065867-69106228 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69065867	 69066717	+	NA	NA	NA	NA	LOC100507370	NA	chr9:69065490-69089939	inter
CUST_18376_PI429285431	0.90559757	A	0.9007869	A	1.00334006798455	0	lncRNA	20104-1_{1..369}	lnc-NR3C2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NR3C2-2:2	chr4	149862700	149863068	-	lnc-NR3C2-2	lnc-NR3C2-2:2	ENSG00000249317	CTB-191D16.1	NA	NA	NA	inter
CUST_10645_PI429285431	1.0172812	A	0.9644237	A	1.03731747205575	0	lncRNA	12177-1_{1..582}	lnc-LGALSL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LGALSL-1:1	chr2	 64518279	 64518860	+	lnc-LGALSL-1	lnc-LGALSL-1:1	XLOC_001496	linc-HSPC159	NA	NA	NA	inter
CUST_11071_PI429285431	5.6048737	P	5.462634	P	1.10361708789693	0	lncRNA	12623-1_{1..233}	lnc-DLGAP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLGAP2-1:1	chr8	  1398496	  1398728	+	lnc-DLGAP2-1	lnc-DLGAP2-1:1	XLOC_006687	linc-DLGAP2-1	NA	NA	NA	inter
LNCA_21_P0008994	0.91927135	A	0.92494506	A	0.996075006910667	0	lncRNA	TCONS_00024504	NA	NA	NA	NA	XLOC_011823	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011823), lincRNA [TCONS_00024504]"	chr16:87808694-87808753	hs|16q24.2	Agilent_HUMAN_G3V2	TCONS_00024504	TCONS_00024504	chr16	 87808694	 87808753	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003663	3.8491669	P	4.527368	P	0.624944033086037	0	lncRNA	TCONS_00008282	NA	NA	NA	NA	XLOC_003724	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003724), lincRNA [TCONS_00008282]"	chr4:147556148-147556207	hs|4q31.22	Agilent_HUMAN_G3V2	TCONS_00008282	TCONS_00008282	chr4	147556148	147556207	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44806_PI429285431	0.9228453	A	0.91660446	A	1.00433519051839	0	lncRNA	49340-1_{1..2979}	"gi|336594400|ref|NR_038906.1| Homo sapiens uncharacterized LOC643623 (LOC643623), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|336594400|ref|NR_038906.1| Homo sapiens uncharacterized LOC643623 (LOC643623), non-coding RNA"	Chr6	125995499	125998477	+	643623	NR_038906.1	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50"	NA	inter
CUST_7345_PI429285431	0.91596514	A	0.9198035	A	0.997342987710249	0	lncRNA	8980-1_{1..278}	"transcript_id ""ENST00000516354.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516354.1"" | genecode_v17"	chrX	137479510	137479787	+	ENSG00000252163.1	ENST00000516354.1	RN7SKP31	RN7SKP31-201	NA	NA	NA	inter
LNCA_21_P0014132	3.997516	P	0.92452365	A	8.41516961143683	0	lncRNA	XR_108528	XR_108528	XR_108528	NA	NA	LOC100505787	uncharacterized LOC100505787	NA	THC2690033	NA	"PREDICTED: Homo sapiens hypothetical LOC100505787 (LOC100505787), miscRNA [XR_108528]"	chr3:185353075-185353016	hs|3q27.2	Agilent_HUMAN_G3V2	XR_108528	XR_108528	chr3	185353016	185353075	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36171_PI429285431	1.1986668	A	1.4549444	A	0.83724537121518	0	lncRNA	37443-1_{1..1132}	n344731|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_280|NULL|-1.3002900|-0.2228444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344731|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_280|NULL|-1.3002900|-0.2228444	chr22	 25915207	 25916338	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32836_PI429285431	1.4166989	A	2.9477458	A	0.346026180002393	0	lncRNA	34470-1_{1..889}	n339490|AJ001872|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1930|NULL|-1.1396000|-0.4271976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339490|AJ001872|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1930|NULL|-1.1396000|-0.4271976	chr21	 38846870	 38847758	+	NA	NA	NA	NA	DYRK1A	NA	chr21:38836870-38857759	inner
CUST_43770_PI429285431	4.8503075	P	5.1214895	P	0.828640362602957	0	lncRNA	48506-1_{1..3000}	"gi|410170795|ref|XR_171117.1| PREDICTED: Homo sapiens hydrocephalus-inducing protein homolog (LOC100996292), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170795|ref|XR_171117.1| PREDICTED: Homo sapiens hydrocephalus-inducing protein homolog (LOC100996292), misc_RNA"	NA	NA	NA	NA	NA	XR_171117.1	NA	NA	NA	NA	NA	Unknown
CUST_22915_PI429285431	0.92124534	A	1.1562437	A	0.849685965028288	0	lncRNA	24492-1_{1..452}	lnc-C1orf31-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C1orf31-2:1	chr1	234409914	234410365	+	lnc-C1orf31-2	lnc-C1orf31-2:1	ENSG00000231272.1	RP4-799P18.4	SLC35F3	NA	chr1:234399914-234420211	inner
LNCA_21_P0010583	1.1070344	A	0.9232336	A	1.13587241846721	0	lncRNA	TCONS_l2_00000915	NA	NA	NA	NA	XLOC_l2_000691	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000691), lincRNA [TCONS_l2_00000915]"	chr1:238164382-238164441	hs|1q43	Agilent_HUMAN_G3V2	TCONS_l2_00000915	TCONS_l2_00000915	chr1	238164382	238164441	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16605_PI429285431	5.648874	P	6.1868834	P	0.688720535760793	0	lncRNA	18305-1_{1..371}	lnc-VSTM2B-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VSTM2B-5:2	chr19	 29706188	 29706558	+	lnc-VSTM2B-5	lnc-VSTM2B-5:2	XLOC_013028	linc-VSTM2B-5	UQCRFS1	NA	chr19:29698167-29704136	inter
CUST_44151_PI429285431	1.8292236	A	1.0247425	A	1.74651750178867	0	lncRNA	48812-2_{3001..3475}	"gi|387527985|ref|NR_046757.1| Homo sapiens SNRK antisense RNA 1 (SNRK-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|387527985|ref|NR_046757.1| Homo sapiens SNRK antisense RNA 1 (SNRK-AS1), non-coding RNA"	Chr3	 43391411	 43391885	-	100873954	NR_046757.1	NA	NA	NA	"hg19_refFlat_SNRK:range=chr3:43344696-433900495'pad=0,hg19_refFlat_SNRK:range=chr3:43344696-433900495'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.20"	NA	inter
CUST_17062_PI429285431	11.815614	P	11.224651	P	1.50625183613255	0	lncRNA	18771-1_{1..811}	lnc-AL445989.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL445989.1-2:1	chr13	 64209594	 64210404	+	lnc-AL445989.1-2	lnc-AL445989.1-2:1	XLOC_010411	linc-C13orf34-14	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30"	NA	inter
CUST_1260_PI429285431	2.613063	A	3.4485872	P	0.560379389427242	0	lncRNA	1252-1_{1..676}	"transcript_id ""ENST00000432481.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432481.2"" | genecode_v17"	chr2	229347977	229348652	-	ENSG00000232023.2	ENST00000432481.2	AC009410.1	AC009410.1-001	NA	NA	NA	inter
CUST_33841_PI429285431	0.89635164	A	0.89814353	A	0.998758727515411	0	lncRNA	35388-1_{1..1479}	n340628|BC084573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3090|NULL|-1.0805800|-0.1640890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n340628|BC084573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3090|NULL|-1.0805800|-0.1640890	chr17	 35289408	 35290886	-	NA	NA	NA	NA	LHX1	NA	chr17:35294772-35301915	inter
CUST_2429_PI429285431	0.9073924	A	0.90682614	A	1.00039257856127	0	lncRNA	2421-1_{1..452}	"transcript_id ""ENST00000518605.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518605.1"" | genecode_v17"	chr5	172896685	172897136	+	ENSG00000253141.1	ENST00000518605.1	CTB-164N12.1	CTB-164N12.1-001	NA	NA	NA	inter
CUST_6814_PI429285431	9.371744	P	9.916467	P	0.685523011485773	0	lncRNA	6762-1_{1..847}	"transcript_id ""ENST00000434859.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434859.1"" | genecode_v17"	chr21	 25415572	 25416418	+	ENSG00000226996.1	ENST00000434859.1	AP000477.3	AP000477.3-001	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90"	NA	inter
CUST_21943_PI429285431	3.6447408	P	3.9125345	P	0.830588786692265	0	lncRNA	23551-1_{1..554}	lnc-BLID-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BLID-2:5	chr11	122238204	122238757	-	lnc-BLID-2	lnc-BLID-2:5	ENSG00000255090.1	RP11-820L6.1	NA	NA	NA	inter
CUST_18755_PI429285431	2.0891056	A	1.7829196	A	1.23643465844826	0	lncRNA	20451-1_{1..403}	lnc-ZFP14-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ZFP14-1:2	chr19	 36812895	 36813297	-	lnc-ZFP14-1	lnc-ZFP14-1:2	ENSG00000232677	AC092296.1	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30"	NA	inter
LNCA_21_P0004930	2.32724	A	2.9638138	A	0.643238738805703	0	lncRNA	TCONS_00011937	NA	NA	NA	NA	XLOC_005448	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005448), lincRNA [TCONS_00011937]"	chr6:119684443-119738763	hs|6q22.31	Agilent_HUMAN_G3V2	TCONS_00011937	TCONS_00011937	chr6	119684443	119738763	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41074_PI429285431	3.1031337	P	3.1798754	P	0.948196714993095	0	lncRNA	41748-1_{1..89}	ENST00000579485 ncrna:miRNA chromosome:GRCh37:17:29861901:29861989:1 gene:ENSG00000266459 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579485 ncrna:miRNA chromosome:GRCh37:17:29861901:29861989:1 gene:ENSG00000266459 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 29861901	 29861989	+	ENSG00000266459	ENST00000579485	NA	NA	RAB11FIP4	NA	chr17:29851901-29865232	inner
CUST_31304_PI429285431	4.0292654	P	1.1780463	A	7.21609884229402	0	lncRNA	33088-2_{3001..3761}	n337768|AL833463|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|150|NULL|-1.1406300|-0.3999243	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337768|AL833463|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|150|NULL|-1.1406300|-0.3999243	chr15	 55834081	 55834841	-	NA	NA	NA	NA	PYGO1	NA	chr15:55838221-55844829	inter
CUST_9413_PI429285431	3.629394	P	4.2354417	P	0.656994090940773	0	lncRNA	10916-1_{1..257}	lnc-BRMS1L-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BRMS1L-3:3	chr14	 36691503	 36691759	+	lnc-BRMS1L-3	lnc-BRMS1L-3:3	XLOC_010798	linc-PAX9-4	NA	NA	NA	inter
CUST_27789_PI429285431	0.88856643	A	0.8872629	A	1.00090394645783	0	lncRNA	29374-2_{3001..4604}	n325015|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316666|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316666|-1.0409100|-0.3891601	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325015|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316666|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316666|-1.0409100|-0.3891601	chr20	 25887447	 25889050	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41196_PI429285431	5.0688677	P	5.7473073	P	0.624840728625794	0	lncRNA	42061-1_{1..78}	ENST00000577874 ncrna:miRNA chromosome:GRCh37:20:52684947:52685024:-1 gene:ENSG00000265595 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577874 ncrna:miRNA chromosome:GRCh37:20:52684947:52685024:-1 gene:ENSG00000265595 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 52684947	 52685024	-	ENSG00000265595	ENST00000577874	NA	NA	BCAS1	NA	chr20:52674947-52687304	inner
CUST_17510_PI429285431	1.4992089	A	0.8912573	A	1.52409369869358	0	lncRNA	19235-1_{1..224}	lnc-PPARGC1A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPARGC1A-2:1	chr4	 23394598	 23394821	-	lnc-PPARGC1A-2	lnc-PPARGC1A-2:1	XLOC_003906	linc-GPR125-1	NA	NA	NA	inter
CUST_6031_PI429285431	1.1446787	A	1.9250802	A	0.582204743925157	0	lncRNA	5957-1_{1..500}	"transcript_id ""ENST00000579492.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579492.1"" | genecode_v17"	chr18	   508568	   509067	-	ENSG00000264265.1	ENST00000579492.1	RP11-14P20.1	RP11-14P20.1-001	COLEC12	NA	chr18:498568-500729	inter
CUST_3871_PI429285431	0.8994906	A	1.1439831	A	0.844112679278624	0	lncRNA	3840-1_{1..648}	"transcript_id ""ENST00000528326.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000528326.1"" | genecode_v17"	chr11	 19321430	 19322077	+	ENSG00000255160.1	ENST00000528326.1	RP11-428C19.5	RP11-428C19.5-001	NA	NA	NA	inter
CUST_29344_PI429285431	5.5609527	P	4.926481	P	1.55236918437019	0	lncRNA	31096-1_{1..261}	n332586|AB370194|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000409807|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000409807|1.1046800|-0.2689832	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332586|AB370194|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000409807|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000409807|1.1046800|-0.2689832	chr8	 26435763	 26436023	+	NA	NA	NA	NA	DPYSL2	NA	chr8:26425763-26451442	inner
CUST_17359_PI429285431	0.8976839	A	0.89487916	A	1.00194598860621	0	lncRNA	19079-1_{1..1123}	lnc-EYA4-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EYA4-1:5	chr6	133427234	133428356	+	lnc-EYA4-1	lnc-EYA4-1:5	XLOC_005466	linc-EYA4	NA	NA	NA	inter
CUST_46348_PI429285431	10.468648	P	10.59587	P	0.915592785373757	0	lncRNA	50572-1_{1..1598}	"gi|373251177|ref|NR_046028.1| Homo sapiens acyl-CoA thioesterase 2 (ACOT2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373251177|ref|NR_046028.1| Homo sapiens acyl-CoA thioesterase 2 (ACOT2), transcript variant 2, non-coding RNA"	Chr14	 74034324	 74035921	+	10965	NR_046028.1	NA	NA	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50"	NA	inter
CUST_50625_PI429285431	6.6554317	P	6.6079135	P	1.03348553752501	0	lncRNA	54309-1_{1..1036}	hg19_lincRNAsTranscripts_TCONS_l2_00002890 range=chr10:13569855-13572257 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002890 range=chr10:13569855-13572257 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 13569855	 13570890	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0000981	0.908292	A	0.90140957	A	1.00478193407756	0	lncRNA	ENST00000418091	NA	NA	NA	NA	XLOC_000230	NA	ENST00000418091	NA	NA	"BROAD Institute lincRNA (XLOC_000230), lincRNA [TCONS_00000216]"	chr1:63491181-63491240	hs|1p31.3	Agilent_HUMAN_G3V2	ENST00000418091	ENST00000418091	chr1	 63491181	 63491240	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17043_PI429285431	3.0056643	A	2.8830671	A	1.08869301015424	0	lncRNA	18753-1_{1..676}	lnc-GPR26-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR26-4:4	chr10	125120835	125121510	+	lnc-GPR26-4	lnc-GPR26-4:4	XLOC_008652	linc-GPR26-3	NA	NA	NA	inter
CUST_31889_PI429285431	11.77134	P	11.967476	P	0.872885302089103	0	lncRNA	33621-1_{1..2353}	n338444|AK098481|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|841|NULL|0.1194100|-0.2690158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338444|AK098481|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|841|NULL|0.1194100|-0.2690158	chr14	 89802487	 89804839	-	NA	NA	NA	NA	FOXN3	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-20.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50chr14:89792487-89814712"	NA	inner
CUST_31488_PI429285431	3.0383508	P	1.9234486	A	2.16580326671745	0	lncRNA	33252-1_{1..1703}	n337967|BC043195|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|352|NULL|-1.2489300|-0.4051977	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337967|BC043195|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|352|NULL|-1.2489300|-0.4051977	chr1	 57179322	 57181024	+	NA	NA	NA	NA	C1orf168	NA	chr1:57184477-57191008	inner
CUST_36046_PI429285431	4.5348325	P	4.7388954	P	0.868102378417118	0	lncRNA	37363-2_{3001..6000}	n344644|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_192|NULL|-1.3349100|-0.2234839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344644|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_192|NULL|-1.3349100|-0.2234839	chr5	173087842	173090841	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46925_PI429285431	2.0164566	A	2.3667068	A	0.784448042864499	0	lncRNA	51038-2_{3001..6000}	"gi|254939594|ref|NR_003587.2| Homo sapiens myosin XVB pseudogene (MYO15B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254939594|ref|NR_003587.2| Homo sapiens myosin XVB pseudogene (MYO15B), non-coding RNA"	NA	NA	NA	NA	NA	NR_003587.2	NA	NA	NA	NA	NA	Unknown
CUST_856_PI429285431	1.3705977	A	1.1690037	A	1.14996822633299	0	lncRNA	850-1_{1..237}	"transcript_id ""ENST00000457457.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457457.2"" | genecode_v17"	chr2	 43228495	 43228731	-	ENSG00000224739.2	ENST00000457457.2	AC016735.1	AC016735.1-001	NA	NA	NA	inter
CUST_47002_PI429285431	1.8028755	A	2.4983885	A	0.617489709749097	0	lncRNA	51101-1_{1..2418}	"gi|300116244|ref|NR_033983.1| Homo sapiens uncharacterized LOC400654 (LOC400654), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300116244|ref|NR_033983.1| Homo sapiens uncharacterized LOC400654 (LOC400654), non-coding RNA"	Chr18	 61880317	 61882734	-	400654	NR_033983.1	NA	NA	NA	NA	NA	inter
CUST_11510_PI429285431	0.900393	A	1.1982026	A	0.813486551117139	0	lncRNA	13080-1_{1..677}	lnc-TECRL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TECRL-2:1	chr4	 64008972	 64009648	-	lnc-TECRL-2	lnc-TECRL-2:1	XLOC_003969	linc-IGFBP7-10	NA	NA	NA	inter
CUST_33171_PI429285431	1.0387902	A	0.9138523	A	1.09046079338093	0	lncRNA	34764-1_{1..2094}	n339861|AK001995|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2309|NULL|-1.2481400|-0.4119595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339861|AK001995|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2309|NULL|-1.2481400|-0.4119595	chr4	 13458074	 13460167	-	NA	NA	NA	NA	RAB28	NA	chr4:13448074-13470170	inner
CUST_35322_PI429285431	5.581757	P	5.222687	P	1.28259883333607	0	lncRNA	36730-2_{3001..3724}	n342356|CR749698|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4848|NULL|-1.2200700|-0.4165988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342356|CR749698|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4848|NULL|-1.2200700|-0.4165988	chr19	 28251091	 28251814	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46480_PI429285431	2.6630912	A	1.9608903	A	1.62698494346147	0	lncRNA	50676-1_{1..1788}	"gi|300795962|ref|NR_034080.1| Homo sapiens uncharacterized LOC100130855 (LOC100130855), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300795962|ref|NR_034080.1| Homo sapiens uncharacterized LOC100130855 (LOC100130855), non-coding RNA"	Chr15	 63879909	 63881696	-	100130855	NR_034080.1	NA	NA	NA	"hg19_refFlat_USP3:range=chr15:63796939-638830255'pad=0,hg19_refFlat_USP3:range=chr15:63796939-638830255'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30"	NA	inter
CUST_41542_PI429285431	2.1269174	A	2.026568	A	1.07203306209643	0	lncRNA	42819-1_{1..115}	ENST00000390756 ncrna:miRNA chromosome:GRCh37:4:29751818:29751932:1 gene:ENSG00000212045 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390756 ncrna:miRNA chromosome:GRCh37:4:29751818:29751932:1 gene:ENSG00000212045 gene_biotype:miRNA transcript_biotype:miRNA	chr4	 29751818	 29751932	+	ENSG00000212045	ENST00000390756	NA	NA	NA	NA	NA	inter
CUST_38554_PI429285431	0.89636934	A	0.900369	A	0.997231486369627	0	lncRNA	39561-1_{1..737}	n383370|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002msf.2||-1.1633800|-0.3226079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n383370|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002msf.2||-1.1633800|-0.3226079	chr19	 11670275	 11671011	+	NA	NA	NA	NA	ELOF1	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20chr19:11663858-11670051"	NA	inner
CUST_11019_PI429285431	1.3514439	A	0.97126526	A	1.30150300252834	0	lncRNA	12565-1_{1..536}	lnc-CTC-236F12.4.1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-CTC-236F12.4.1-4:2	chr5	 55833476	 55834011	-	lnc-CTC-236F12.4.1-4	lnc-CTC-236F12.4.1-4:2	XLOC_004832	linc-ANKRD55-2	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-18.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.61;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80"	NA	inter
CUST_4462_PI429285431	2.329664	A	1.3058319	A	2.0333126970783	0	lncRNA	4412-1_{1..321}	"transcript_id ""ENST00000538837.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000538837.1"" | genecode_v17"	chr12	124192149	124192469	-	ENSG00000255839.1	ENST00000538837.1	RP11-338K17.8	RP11-338K17.8-001	ATP6V0A2	"hg19_refFlat_TCTN2:range=chr12:124155788-1241922605'pad=0,hg19_refFlat_TCTN2:range=chr12:124155788-1241922605'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00chr12:124196865-124202933"	NA	inner
CUST_27493_PI429285431	0.9099634	A	1.2768165	A	0.77547216347799	0	lncRNA	29065-1_{1..437}	n324671|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000128992|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000128992|-0.9231610|-0.1556895	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324671|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000128992|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000128992|-0.9231610|-0.1556895	chr22	 31831368	 31831804	-	NA	NA	NA	NA	EIF4ENIF1	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70chr22:31835345-31842045"	NA	inter
CUST_911_PI429285431	0.88926375	A	0.8875353	A	1.00119878821709	0	lncRNA	900-1_{1..366}	"transcript_id ""ENST00000411785.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411785.1"" | genecode_v17"	chr2	 66462509	 66462874	-	ENSG00000227293.1	ENST00000411785.1	AC118345.1	AC118345.1-001	NA	NA	NA	inter
CUST_13246_PI429285431	1.0869191	A	0.9182139	A	1.12404921233114	0	lncRNA	14876-1_{1..255}	lnc-TRIM62-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIM62-1:1	chr1	 33606250	 33606504	-	lnc-TRIM62-1	lnc-TRIM62-1:1	XLOC_000780	linc-AK2-1	TRIM62	NA	chr1:33611003-33616476	inter
LNCA_21_P0001163	0.9033531	A	0.8949002	A	1.00587630192336	0	lncRNA	ENST00000414418	NA	NA	NA	NA	XLOC_000944	NA	ENST00000414418	NA	NA	"BROAD Institute lincRNA (XLOC_000944), lincRNA [TCONS_00000591]"	chr1:103228965-103228906	hs|1p21.1	Agilent_HUMAN_G3V2	ENST00000414418	ENST00000414418	chr1	103228906	103228965	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45664_PI429285431	3.0158405	P	3.8521721	P	0.560065862504656	0	lncRNA	50040-1_{1..1593}	"gi|386268029|ref|NR_047680.1| Homo sapiens B-cell linker (BLNK), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386268029|ref|NR_047680.1| Homo sapiens B-cell linker (BLNK), transcript variant 6, non-coding RNA"	NW_003871070.1	     8097	     9689	+	29760	NR_047680.1	NA	NA	NA	NA	NA	Unknown
CUST_32364_PI429285431	0.91031665	A	0.9080095	A	1.00160047391109	0	lncRNA	34042-1_{1..1537}	n338949|BC073940|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1377|NULL|1.6405500|-0.1525876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338949|BC073940|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1377|NULL|1.6405500|-0.1525876	chr2	127781831	127783367	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15881_PI429285431	1.4511027	A	0.8856406	A	1.47986143786438	0	lncRNA	17572-1_{1..1228}	lnc-ATM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATM-1:1	chr11	108371537	108372764	+	lnc-ATM-1	lnc-ATM-1:1	XLOC_009272	linc-DDX10-2	EXPH5	NA	chr11:108376158-108382543	inter
CUST_16999_PI429285431	1.475864	A	1.2966024	A	1.13230420116328	0	lncRNA	18708-2_{3001..3364}	lnc-NSUN2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NSUN2-1:2	chr5	  6708221	  6708584	-	lnc-NSUN2-1	lnc-NSUN2-1:2	XLOC_004725	linc-NSUN2-3	PAPD7	NA	chr5:6714718-6717824	inter
CUST_13637_PI429285431	5.138148	P	5.1867275	P	0.966887873249724	0	lncRNA	15276-1_{1..1233}	lnc-SCCPDH-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCCPDH-1:10	chr1	246955359	246956591	+	lnc-SCCPDH-1	lnc-SCCPDH-1:10	XLOC_000643	linc-VN1R5-3	LOC100130097	NA	chr1:246945359-246948062	inter
CUST_11637_PI429285431	1.9544909	A	1.9077853	A	1.03290358925721	0	lncRNA	13214-1_{1..333}	lnc-RP11-831A10.1.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-831A10.1.1-1:5	chr11	119863386	119863718	-	lnc-RP11-831A10.1.1-1	lnc-RP11-831A10.1.1-1:5	XLOC_009578	linc-PVRL1	NA	NA	NA	inter
CUST_22943_PI429285431	3.8528087	P	3.825649	P	1.01900398963662	0	lncRNA	24519-1_{1..562}	lnc-AC021066.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC021066.1-1:1	chr12	 52795776	 52796337	+	lnc-AC021066.1-1	lnc-AC021066.1-1:1	ENSG00000258253.1	RP3-416H24.4	KRT82	"hg19_refFlat_KRT86:range=chr12:52695701-527023695'pad=0,hg19_refFlat_KRT86:range=chr12:52695701-527023695'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_KRT85:range=chr12:52754637-527611895'pad=0,hg19_refFlat_KRT85:range=chr12:52754637-527611895'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_KRT84:range=chr12:52771818-527793695'pad=0,hg19_refFlat_KRT84:range=chr12:52771818-527793695'pad=0 3'pad=0 strand=- repeatMasking=none,-101.80;hg19_refFlat_KRT81:range=chr12:52680039-526852495'pad=0,hg19_refFlat_KRT81:range=chr12:52680039-526852495'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_KRT83:range=chr12:52708415-527151195'pad=0,hg19_refFlat_KRT83:range=chr12:52708415-527151195'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr12:52787735-52800176"	NA	inner
CUST_20921_PI429285431	3.7287967	P	3.8632555	P	0.911011518393059	0	lncRNA	22552-1_{1..442}	lnc-C17orf63-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf63-3:2	chr17	 27069367	 27069808	-	lnc-C17orf63-3	lnc-C17orf63-3:2	ENSG00000265073.1	AC010761.6	NEK8	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60chr17:27059367-27069784"	NA	inner
CUST_17307_PI429285431	7.8067217	P	7.8361225	P	0.979827168419459	0	lncRNA	19025-1_{1..407}	lnc-FTSJ2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FTSJ2-1:1	chr7	  2393857	  2394263	-	lnc-FTSJ2-1	lnc-FTSJ2-1:1	XLOC_006333	linc-SNX8	EIF3B	NA	chr7:2394474-2403863	inter
LNCA_21_P0004730	0.9069922	A	0.89790154	A	1.0063210594542	0	lncRNA	BC042564	NA	BC042564	NA	Hs.639414	XLOC_005610	NA	ENST00000457945	THC2498319	NA	"BROAD Institute lincRNA (XLOC_005610), lincRNA [TCONS_00011454]"	chr6:12583209-12583150	hs|6p24.1	Agilent_HUMAN_G3V2	BC042564	BC042564	chr6	 12583150	 12583209	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32278_PI429285431	4.6966944	P	4.2908835	P	1.32483335428236	0	lncRNA	33964-1_{1..594}	n338855|BC014578|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1279|NULL|1.2821000|-0.1584428	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338855|BC014578|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1279|NULL|1.2821000|-0.1584428	chr2	 61372265	 61372858	+	NA	NA	NA	NA	KIAA1841	NA	chr2:61362265-61365169	inner
CUST_9739_PI429285431	0.91250426	A	0.9190936	A	0.99544303218654	0	lncRNA	11256-1_{1..478}	lnc-PCM1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCM1-4:2	chr8	 17677867	 17678344	+	lnc-PCM1-4	lnc-PCM1-4:2	XLOC_006726	linc-PCM1	NA	NA	NA	inter
CUST_26970_PI429285431	1.0844166	A	1.1120154	A	0.981051787385638	0	lncRNA	28496-1_{1..455}	n324057|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052819|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052819|-0.9889010|-0.4271979	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324057|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052819|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052819|-0.9889010|-0.4271979	chr9	 84209922	 84210376	+	NA	NA	NA	NA	TLE1	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90chr9:84199922-84220974"	NA	inner
CUST_38354_PI429285431	6.1412964	P	4.8515105	P	2.44491769580052	0	lncRNA	39397-1_{1..3000}	n382120|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vvr.1||1.2489000|-0.2980283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n382120|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vvr.1||1.2489000|-0.2980283	chr14	 19880208	 19883207	-	NA	NA	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.30"	NA	inter
CUST_30898_PI429285431	0.9190489	A	0.91769534	A	1.00093865656031	0	lncRNA	32686-1_{1..305}	n336928|AY956318|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000333296|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000333296|0.3543570|-0.3343817	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336928|AY956318|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000333296|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000333296|0.3543570|-0.3343817	chr4	 88896900	 88897204	+	NA	NA	NA	NA	SPP1	NA	chr4:88896802-88904563	inner
CUST_6695_PI429285431	0.8980695	A	1.0891495	A	0.875949740752923	0	lncRNA	6644-1_{1..273}	"transcript_id ""ENST00000428495.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428495.1"" | genecode_v17"	chr20	 39326535	 39326807	-	ENSG00000229771.1	ENST00000428495.1	RP4-644L1.2	RP4-644L1.2-001	MAFB	NA	chr20:39316535-39317876	inter
LNCA_21_P0002665	0.9122564	A	0.90273863	A	1.00661902500091	0	lncRNA	TCONS_00005170	NA	NA	NA	NA	XLOC_002134	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002134), lincRNA [TCONS_00005170]"	chr2:65682821-65681085	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00005170	TCONS_00005170	chr2	 65681085	 65682821	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9306_PI429285431	5.524179	P	4.9605436	P	1.47798886456495	0	lncRNA	10812-2_{3001..3983}	lnc-TPRA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPRA1-1:1	chr3	127258327	127259309	-	lnc-TPRA1-1	lnc-TPRA1-1:1	XLOC_003240	linc-TXNRD3-3	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60"	NA	inter
CUST_670_PI429285431	0.907637	A	0.90001166	A	1.00529947572872	0	lncRNA	663-1_{1..627}	"transcript_id ""ENST00000432314.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432314.1"" | genecode_v17"	chr2	  4677790	  4678416	-	ENSG00000231532.1	ENST00000432314.1	AC022311.1	AC022311.1-003	NA	NA	NA	inter
CUST_43815_PI429285431	8.432838	P	8.819587	P	0.764851196133394	0	lncRNA	48539-2_{3001..3357}	"gi|256985184|ref|NR_028323.1| Homo sapiens solute carrier family 5 (sodium-dependent vitamin transporter), member 6 (SLC5A6), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|256985184|ref|NR_028323.1| Homo sapiens solute carrier family 5 (sodium-dependent vitamin transporter), member 6 (SLC5A6), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_028323.1	NA	NA	NA	"hg19_refFlat_ATRAID:range=chr2:27435072-274398165'pad=0,hg19_refFlat_ATRAID:range=chr2:27435072-274398165'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.10"	NA	Unknown
CUST_34868_PI429285431	5.814542	P	5.856091	P	0.971611182839357	0	lncRNA	36294-1_{1..1215}	n341779|BC010186|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4256|NULL|-1.1006600|-0.2371279	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341779|BC010186|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4256|NULL|-1.1006600|-0.2371279	chr9	125578330	125579544	-	NA	NA	NA	NA	PDCL	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60chr9:125580376-125589531"	NA	inter
CUST_49314_PI429285431	0.8944052	A	0.8916344	A	1.00192241768797	0	lncRNA	53131-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00022844 range=chr5:36487554-36522410 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022844 range=chr5:36487554-36522410 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 36487554	 36490553	-	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80"	NA	inter
CUST_346_PI429285431	5.33815	P	5.196826	P	1.10291682797308	0	lncRNA	339-1_{1..1849}	"transcript_id ""ENST00000435253.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435253.2"" | genecode_v17"	chr1	106144774	106146622	-	ENSG00000230768.2	ENST00000435253.2	RP11-251P6.1	RP11-251P6.1-001	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70"	NA	inter
CUST_34727_PI429285431	5.722687	P	5.706795	P	1.01107638894538	0	lncRNA	36173-1_{1..1425}	n341634|CR602372|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4105|NULL|-1.1847000|-0.1737613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341634|CR602372|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4105|NULL|-1.1847000|-0.1737613	chr8	144638998	144640422	-	NA	NA	NA	NA	GSDMD	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-60.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10chr8:144635557-144645232"	NA	inner
CUST_8806_PI429285431	1.846685	A	2.0019257	A	0.897982540505504	0	lncRNA	10347-1_{1..2036}	lnc-IWS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-IWS1-1:1	chr2	128322263	128324298	-	lnc-IWS1-1	lnc-IWS1-1:1	ENSG00000250457	AC010976.1	MYO7B	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-23.80;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-13.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50chr2:128312263-128332364"	NA	inner
CUST_21193_PI429285431	8.868032	P	9.100775	P	0.851015314873112	0	lncRNA	22819-1_{1..3000}	lnc-LMAN1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LMAN1L-1:1	chr15	 75122471	 75125470	+	lnc-LMAN1L-1	lnc-LMAN1L-1:1	ENSG00000261606.1	RP11-414J4.2	CPLX3	NA	chr15:75118951-75124136	inner
CUST_20487_PI429285431	0.8991873	A	0.8978362	A	1.00093694981915	0	lncRNA	22130-1_{1..697}	lnc-CNN3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CNN3-1:2	chr1	 95320800	 95321496	-	lnc-CNN3-1	lnc-CNN3-1:2	ENSG00000237416.2	RP11-465K1.2	SLC44A3	NA	chr1:95310800-95330982	inner
CUST_8626_PI429285431	7.494014	P	7.5241723	P	0.979312836395888	0	lncRNA	10179-1_{1..3000}	lnc-ELMOD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ELMOD3-1:1	chr2	 85519451	 85522450	+	lnc-ELMOD3-1	lnc-ELMOD3-1:1	ENSG00000250117	AC093162.2	TCF7L1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20chr2:85509451-85529567"	NA	inner
LNCA_21_P0008183	0.9221892	A	0.91086	A	1.00788371716364	0	lncRNA	TCONS_00022058	NA	NA	NA	NA	XLOC_010664	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010664), lincRNA [TCONS_00022058]"	chr13:79360615-79360556	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00022058	TCONS_00022058	chr13	 79360556	 79360615	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6268_PI429285431	0.9185579	A	0.91445535	A	1.00284771803315	0	lncRNA	6192-2_{3001..3510}	"transcript_id ""ENST00000579781.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000579781.1"" | genecode_v17"	chr18	 74330169	 74330678	+	ENSG00000266256.1	ENST00000579781.1	LINC00683	LINC00683-001	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
CUST_50632_PI429285431	0.89834917	A	0.9015712	A	0.99776915104031	0	lncRNA	54316-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00003437 range=chr10:27220142-27232562 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003437 range=chr10:27220142-27232562 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 27220142	 27223141	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
LNCA_21_P0001868	0.92286456	A	0.9110518	A	1.0082215944862	0	lncRNA	TCONS_00002911	NA	NA	NA	NA	XLOC_001504	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001504), lincRNA [TCONS_00002911]"	chr2:65957975-65958034	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00002911	TCONS_00002911	chr2	 65957975	 65958034	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2443_PI429285431	0.91097885	A	0.9121207	A	0.999208843021727	0	lncRNA	2435-1_{1..342}	"transcript_id ""ENST00000507398.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507398.1"" | genecode_v17"	chr5	174413298	174413639	+	ENSG00000249403.1	ENST00000507398.1	CTC-281M20.4	CTC-281M20.4-001	NA	NA	NA	inter
CUST_15083_PI429285431	2.5928702	A	1.6799701	A	1.88282654748461	0	lncRNA	16746-1_{1..2912}	lnc-AVPR1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AVPR1A-1:1	chr12	 63755007	 63757918	-	lnc-AVPR1A-1	lnc-AVPR1A-1:1	XLOC_010106	linc-AVPR1A	NA	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70"	NA	inter
CUST_28253_PI429285431	1.9271196	A	2.3437848	A	0.7491543000401	0	lncRNA	29888-1_{1..2259}	n325545|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255101|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255101|-1.1090200|-0.2714043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325545|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255101|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255101|-1.1090200|-0.2714043	chr17	 60394617	 60396875	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.20;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10"	NA	inter
CUST_15063_PI429285431	0.89986885	A	0.89651144	A	1.00232988925897	0	lncRNA	16726-1_{1..411}	lnc-EMX2-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EMX2-5:4	chr10	120001295	120001705	+	lnc-EMX2-5	lnc-EMX2-5:4	XLOC_008636	linc-NANOS1-3	NA	NA	NA	inter
CUST_17929_PI429285431	2.6754751	A	2.8480978	A	0.887228306692067	0	lncRNA	19661-1_{1..620}	lnc-FTSJD2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FTSJD2-1:5	chr6	 37503308	 37503927	+	lnc-FTSJD2-1	lnc-FTSJD2-1:5	XLOC_005278	linc-ZFAND3-2	NA	NA	NA	inter
CUST_22862_PI429285431	1.5525236	A	1.7751498	A	0.85700397437721	0	lncRNA	24440-1_{1..964}	lnc-ACAA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACAA1-1:1	chr3	 38164388	 38165351	-	lnc-ACAA1-1	lnc-ACAA1-1:1	ENSG00000239685.1	AP006309.4	DLEC1	"hg19_refFlat_DLEC1:range=chr3:38080717-381639035'pad=0,hg19_refFlat_DLEC1:range=chr3:38080717-381639035'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.90;hg19_refFlat_DLEC1:range=chr3:38080717-381640965'pad=0,hg19_refFlat_DLEC1:range=chr3:38080717-381640965'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.90chr3:38154388-38164228"	NA	inner
LNCA_21_P0010089	0.92180204	A	1.0522071	A	0.913574913263599	0	lncRNA	TCONS_00028556	NA	NA	NA	NA	XLOC_013544	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013544), lincRNA [TCONS_00028556]"	chr20:46582498-46582557	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028556	TCONS_00028556	chr20	 46582498	 46582557	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4840_PI429285431	4.223816	P	4.097479	P	1.09151881581306	0	lncRNA	4783-1_{1..737}	"transcript_id ""ENST00000557467.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557467.1"" | genecode_v17"	chr14	 57284472	 57285208	-	ENSG00000258776.1	ENST00000557467.1	RP11-1085N6.5	RP11-1085N6.5-001	OTX2	NA	chr14:57274472-57277184	inter
CUST_30203_PI429285431	3.8812804	P	4.23643	P	0.78178857150151	0	lncRNA	31978-1_{1..502}	n335018|AJ504733|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248306|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248306|-1.2775700|-0.0415779	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335018|AJ504733|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248306|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248306|-1.2775700|-0.0415779	chr2	182321951	182322452	+	NA	NA	NA	NA	ITGA4	NA	chr2:182321619-182332453	inner
CUST_47454_PI429285431	4.7255993	P	4.7742467	P	0.966842368039115	0	lncRNA	51485-1_{1..3000}	"gi|218082838|ref|NR_024583.1| Homo sapiens POM121 transmembrane nucleoporin-like 8 pseudogene (POM121L8P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|218082838|ref|NR_024583.1| Homo sapiens POM121 transmembrane nucleoporin-like 8 pseudogene (POM121L8P), non-coding RNA"	Chr22	 21636714	 21639713	+	29797	NR_024583.1	NA	NA	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0,hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-9.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70"	NA	inter
CUST_20168_PI429285431	3.1249835	P	2.3399057	A	1.72318524287171	0	lncRNA	21813-1_{1..542}	lnc-LIPC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIPC-1:1	chr15	 58883740	 58884281	+	lnc-LIPC-1	lnc-LIPC-1:1	ENSG00000259250.1	RP11-50C13.1	ADAM10	NA	chr15:58888510-58893875	inter
CUST_23102_PI429285431	4.3480086	P	4.510114	P	0.893719866842262	0	lncRNA	24673-1_{1..551}	lnc-KIF1C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIF1C-1:1	chr17	  4891711	  4892261	+	lnc-KIF1C-1	lnc-KIF1C-1:1	ENSG00000262227.1	RP5-1050D4.5	INCA1	NA	chr17:4891425-4900905	inner
CUST_36372_PI429285431	1.098388	A	1.1223776	A	0.983509163853375	0	lncRNA	37592-1_{1..3000}	n344890|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_439|NULL|-1.4115000|-0.2532283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344890|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_439|NULL|-1.4115000|-0.2532283	chr6	 25003671	 25006670	+	NA	NA	NA	NA	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ASS1:range=chr9:133327616-1333764085'pad=0,hg19_refFlat_ASS1:range=chr9:133327616-1333764085'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60"	NA	inter
CUST_7506_PI429285431	0.9091344	A	0.9124906	A	0.997676363265737	0	lncRNA	9147-1_{1..565}	lnc-KIAA1147-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1147-2:3	chr7	141437998	141438562	-	lnc-KIAA1147-2	lnc-KIAA1147-2:3	ENSG00000228775	RP5-894A10.5	WEE2	"hg19_refFlat_WEE2:range=chr7:141408559-1414301205'pad=0,hg19_refFlat_WEE2:range=chr7:141408559-1414301205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50chr7:141427998-141431071"	NA	inter
LNCA_21_P0007855	0.91449577	A	0.9233977	A	0.993848649820398	0	lncRNA	TCONS_00021224	NA	NA	NA	NA	XLOC_009912	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009912), lincRNA [TCONS_00021224]"	chr12:121557633-121557692	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00021224	TCONS_00021224	chr12	121557633	121557692	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51504_PI429285431	7.7744102	P	6.7986135	P	1.9667269836085	0	lncRNA	55080-1_{1..753}	hg19_lincRNAsTranscripts_TCONS_l2_00010287 range=chr16:75741011-75743679 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010287 range=chr16:75741011-75743679 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 75741011	 75741763	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38597_PI429285431	1.3152943	A	0.90480685	A	1.32913481912482	0	lncRNA	39605-2_{3001..3115}	n383681|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002suy.1||1.9249000|-0.2692637	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n383681|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002suy.1||1.9249000|-0.2692637	chr2	 96475812	 96475926	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30062_PI429285431	1.6624166	A	0.90054715	A	1.69568647903608	0	lncRNA	31831-1_{1..411}	n334574|U66189|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220924|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220924|3.1285000|-0.0530141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334574|U66189|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220924|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220924|3.1285000|-0.0530141	chr14	106329408	106329818	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004433	2.9645824	A	3.3854947	P	0.746952133655122	0	lncRNA	TCONS_00010445	NA	NA	NA	NA	XLOC_004965	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004965), lincRNA [TCONS_00010445]"	chr5:117809329-117809270	hs|5q23.1	Agilent_HUMAN_G3V2	TCONS_00010445	TCONS_00010445	chr5	117809270	117809329	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004354	4.82339	P	4.843686	P	0.986030378341981	0	lncRNA	TCONS_00010248	NA	NA	NA	NA	XLOC_004710	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004710), lincRNA [TCONS_00010248]"	chr5:2737062-2737003	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00010248	TCONS_00010248	chr5	  2737003	  2737062	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013340	8.522673	P	8.513561	P	1.00633594482473	0	lncRNA	ENST00000478672	NA	AK000993	NA	NA	XLOC_l2_013931	NA	ENST00000478672	THC2499311	NA	"BROAD Institute lincRNA (XLOC_l2_013931), lincRNA [TCONS_l2_00026781]"	chr7:5940808-5940867	hs|7p22.1	Agilent_HUMAN_G3V2	ENST00000478672	ENST00000478672	chr7	  5940808	  5940867	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3310548	3.8623471	P	4.200271	P	0.791179033592381	0	lncRNA	XR_109928	XR_109928	XR_109928	100131131	Hs.689628	LOC100131131	AHPA9419	NA	NP862570	NA	"PREDICTED: Homo sapiens AHPA9419 (LOC100131131), miscRNA [XR_109928]"	chr2:102737796-102737855	hs|2q12.1	Agilent_HUMAN_G3V2	XR_109928	XR_109928	chr2	102737796	102737855	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51018_PI429285431	1.0413613	A	1.1229632	A	0.945007772255393	0	lncRNA	54664-1_{1..712}	hg19_lincRNAsTranscripts_TCONS_l2_00007041 range=chr13:114944758-114988349 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007041 range=chr13:114944758-114988349 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	114944758	114945469	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25845_PI429285431	8.571802	P	9.006029	P	0.740090190783834	0	lncRNA	27365-2_{3001..3929}	lnc-HOXB7-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOXB7-1:4	chr17	 46719448	 46720376	-	lnc-HOXB7-1	lnc-HOXB7-1:4	ENSG00000260027.1	RP11-357H14.19	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-57.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00"	NA	inter
LNCA_21_P0005776	5.886724	P	6.2397976	P	0.782914354366748	0	lncRNA	TCONS_00014880	NA	NA	NA	NA	XLOC_006948	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006948), lincRNA [TCONS_00014880]"	chr8:142388113-142392205	hs|8q24.3	Agilent_HUMAN_G3V2	TCONS_00014880	TCONS_00014880	chr8	142388113	142392205	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5526_PI429285431	7.403755	P	7.6427145	P	0.847356221986572	0	lncRNA	5457-1_{1..674}	"transcript_id ""ENST00000565072.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565072.1"" | genecode_v17"	chr16	 48657373	 48658046	+	ENSG00000260086.1	ENST00000565072.1	RP11-42I10.1	RP11-42I10.1-003	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60"	NA	inter
CUST_51441_PI429285431	1.739473	A	0.9196872	A	1.76514389845752	0	lncRNA	55018-1_{1..610}	hg19_lincRNAsTranscripts_TCONS_l2_00010081 range=chr16:29438536-29443132 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010081 range=chr16:29438536-29443132 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 29438536	 29439145	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40704_PI429285431	0.9039483	A	0.91300225	A	0.993743931284832	0	lncRNA	41443-1_{1..1333}	n410266|NR_037175_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037175_3||0.4121110|-0.2543174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410266|NR_037175_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037175_3||0.4121110|-0.2543174	chr6	  4093240	  4094572	+	NA	NA	NA	NA	C6orf201	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-20.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20chr6:4083240-4105655"	NA	inner
CUST_9882_PI429285431	2.4373417	A	2.6169376	P	0.8829502767147	0	lncRNA	11405-1_{1..500}	lnc-ENC1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENC1-3:1	chr5	 73616990	 73617489	-	lnc-ENC1-3	lnc-ENC1-3:1	XLOC_004885	linc-ANKRA2-5	NA	NA	NA	inter
CUST_26738_PI429285431	0.9153502	A	0.90375787	A	1.00806755964003	0	lncRNA	28232-2_{3001..6000}	n6223|AJ251760|GNAS1-asRNA|Homosapiens|GNAS1-AS|NONCODEv2.0|n6223|NULL|1.5226800|-0.2730873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n6223|AJ251760|GNAS1-asRNA|Homosapiens|GNAS1-AS|NONCODEv2.0|n6223|NULL|1.5226800|-0.2730873	chr20	 57419990	 57422989	-	NA	NA	NA	NA	GNAS	NA	chr20:57414795-57435958	inter
LNCA_33_P3249674	1.5257399	A	2.4503355	A	0.526828171812527	0	lncRNA	XR_108749	XR_108749	XR_108749	   541472	Hs.512234	LOC541472	uncharacterized LOC541472	ENST00000325042	THC2483695	NA	"PREDICTED: Homo sapiens hypothetical LOC541472 (LOC541472), miscRNA [XR_108749]"	chr7:22765879-22765820	hs|7p15.3	Agilent_HUMAN_G3V2	XR_108749	XR_108749	chr7	 22765820	 22765879	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22666_PI429285431	1.512886	A	1.0046365	A	1.42232336623692	0	lncRNA	24250-1_{1..405}	lnc-LRP5L-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRP5L-4:1	chr22	 26295683	 26296087	-	lnc-LRP5L-4	lnc-LRP5L-4:1	ENSG00000231933.1	CTA-125H2.2	MYO18B	NA	chr22:26285683-26305802	inner
LNCA_21_P0008760	3.8540304	P	3.8501549	P	1.0026899032133	0	lncRNA	TCONS_00023745	NA	NA	NA	NA	XLOC_011537	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011537), lincRNA [TCONS_00023745]"	chr15:78439889-78439830	hs|15q25.1	Agilent_HUMAN_G3V2	TCONS_00023745	TCONS_00023745	chr15	 78439830	 78439889	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3109_PI429285431	1.5803981	A	1.8401768	A	0.835216026288096	0	lncRNA	3089-1_{1..3000}	"transcript_id ""ENST00000605536.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605536.1"" | genecode_v17"	chr8	 56449431	 56452430	+	ENSG00000270907.1	ENST00000605536.1	RP11-628E19.4	RP11-628E19.4-001	NA	NA	NA	inter
CUST_5543_PI429285431	0.90918237	A	1.0845884	A	0.885518265052887	0	lncRNA	5473-1_{1..812}	"transcript_id ""ENST00000563603.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563603.1"" | genecode_v17"	chr16	 51805474	 51806285	+	ENSG00000260057.1	ENST00000563603.1	RP11-7O14.1	RP11-7O14.1-002	NA	NA	NA	inter
CUST_3488_PI429285431	3.251563	P	3.469465	P	0.859814890129498	0	lncRNA	3459-1_{1..673}	"transcript_id ""ENST00000603533.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603533.1"" | genecode_v17"	chr9	 98169272	 98169944	-	ENSG00000271384.1	ENST00000603533.1	RP11-435O5.7	RP11-435O5.7-001	PTCH1	NA	chr9:98175399-98179944	inter
CUST_42731_PI429285431	5.4946446	P	5.9478426	P	0.73042193699209	0	lncRNA	45678-1_{1..85}	ENST00000585078 ncrna:snoRNA chromosome:GRCh37:2:29136530:29136614:1 gene:ENSG00000264994 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585078 ncrna:snoRNA chromosome:GRCh37:2:29136530:29136614:1 gene:ENSG00000264994 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 29136530	 29136614	+	ENSG00000264994	ENST00000585078	NA	NA	WDR43	NA	chr2:29126530-29146614	inner
CUST_13894_PI429285431	5.614363	P	5.7087164	P	0.936691968375975	0	lncRNA	15539-1_{1..450}	lnc-CLVS2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLVS2-2:1	chr6	123433206	123433655	+	lnc-CLVS2-2	lnc-CLVS2-2:1	XLOC_005455	linc-NKAIN2-2	NA	NA	NA	inter
CUST_24073_PI429285431	0.91870666	A	1.4307766	A	0.701215630465327	0	lncRNA	25623-1_{1..2154}	lnc-CHRNA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHRNA3-1:1	chr15	 78881465	 78883618	-	lnc-CHRNA3-1	lnc-CHRNA3-1:1	ENSG00000261762.1	RP11-650L12.2	CHRNA3	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CHRNA5:range=chr15:78858062-788855955'pad=0,hg19_refFlat_CHRNA5:range=chr15:78858062-788855955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70chr15:78885394-78893618"	NA	inner
CUST_45564_PI429285431	0.8937113	A	0.8959015	A	0.998483020823012	0	lncRNA	49963-1_{1..672}	"gi|224586826|ref|NR_027269.1| Homo sapiens septin 7-like (SEPT7L), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224586826|ref|NR_027269.1| Homo sapiens septin 7-like (SEPT7L), non-coding RNA"	Chr10	 38671997	 38672668	-	285961	NR_027269.1	NA	NA	NA	NA	NA	inter
CUST_24362_PI429285431	1.7577076	A	1.9835033	A	0.855123263297117	0	lncRNA	25915-1_{1..553}	lnc-AC019294.2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC019294.2-1:1	chr15	 76050754	 76051306	+	lnc-AC019294.2-1	lnc-AC019294.2-1:1	ENSG00000260288.1	RP11-24M17.4	NA	NA	NA	inter
CUST_47731_PI429285431	1.4155426	A	0.90258783	A	1.42696976802036	0	lncRNA	51685-2_{3001..5894}	"gi|385137077|ref|NR_047615.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 45, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137077|ref|NR_047615.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 45, non-coding RNA"	ChrY	 15363259	 15366152	-	7404	NR_047615.1	NA	NA	NA	NA	NA	inter
CUST_50492_PI429285431	1.4714289	A	1.9432333	A	0.721062190418265	0	lncRNA	54188-1_{1..627}	hg19_lincRNAsTranscripts_TCONS_l2_00030301 range=chrX:102071951-102098298 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030301 range=chrX:102071951-102098298 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	102071951	102072577	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8976_PI429285431	2.9634364	A	2.3764324	A	1.50212409170747	0	lncRNA	10507-2_{3001..5008}	lnc-FAM20C-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-FAM20C-3:1	chr7	   156409	   158416	+	lnc-FAM20C-3	lnc-FAM20C-3:1	ENSG00000240859	AC093627.10	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40"	NA	inter
CUST_4591_PI429285431	3.6872225	P	5.0394454	P	0.391688072010522	0	lncRNA	4540-1_{1..376}	"transcript_id ""ENST00000422430.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000422430.1"" | genecode_v17"	chr13	 36271661	 36272036	+	ENSG00000236036.1	ENST00000422430.1	LINC00445	LINC00445-001	NA	NA	NA	inter
CUST_37135_PI429285431	0.90146005	A	0.8998203	A	1.00113723425035	0	lncRNA	38258-1_{1..2155}	n345576|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1125|NULL|-1.6143500|-0.2766765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n345576|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1125|NULL|-1.6143500|-0.2766765	chr2	238031499	238033653	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32558_PI429285431	0.9122946	A	0.91601706	A	0.997423113233808	0	lncRNA	34222-1_{1..2232}	n339174|AK096136|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1605|NULL|-0.9693250|-0.1952807	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339174|AK096136|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1605|NULL|-0.9693250|-0.1952807	chr2	234990902	234993133	+	NA	NA	NA	NA	SPP2	NA	chr2:234980902-234985776	inter
CUST_35247_PI429285431	2.4430852	A	3.3640604	P	0.52815189155536	0	lncRNA	36648-1_{1..237}	n342247|L32786|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4737|NULL|-1.0306500|-0.2515551	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342247|L32786|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4737|NULL|-1.0306500|-0.2515551	chrX	118605082	118605318	-	NA	NA	NA	NA	SLC25A5	NA	chrX:118602363-118605359	inner
LNCA_21_P0014235	6.0102053	P	5.8564677	P	1.11244776815835	0	lncRNA	XR_108972	XR_108972	XR_108972	NA	NA	LOC100507009	uncharacterized LOC100507009	ENST00000456944	THC2653786	NA	"PREDICTED: Homo sapiens hypothetical LOC100507009 (LOC100507009), miscRNA [XR_108972]"	chr9:91703588-91703529	hs|9q22.1	Agilent_HUMAN_G3V2	XR_108972	XR_108972	chr9	 91703529	 91703588	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1822_PI429285431	0.89619124	A	0.89766365	A	0.998979923791693	0	lncRNA	1809-1_{1..577}	"transcript_id ""ENST00000505511.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505511.1"" | genecode_v17"	chr4	 92809037	 92809613	+	ENSG00000249052.1	ENST00000505511.1	RP11-354O24.1	RP11-354O24.1-001	NA	NA	NA	inter
CUST_7118_PI429285431	0.9023971	A	0.9037031	A	0.999095159397556	0	lncRNA	7055-1_{1..582}	"transcript_id ""ENST00000417426.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417426.1"" | genecode_v17"	chrX	139099427	139100008	+	ENSG00000233145.1	ENST00000417426.1	RP11-364B14.1	RP11-364B14.1-001	NA	NA	NA	inter
CUST_13088_PI429285431	0.8880984	A	1.2939559	A	0.754787533564713	0	lncRNA	14714-2_{3001..6000}	lnc-SLITRK5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK5-1:2	chr13	 88347720	 88350719	+	lnc-SLITRK5-1	lnc-SLITRK5-1:2	XLOC_010463	linc-GPC5-8	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30"	NA	inter
CUST_40718_PI429285431	0.8978159	A	0.89949536	A	0.998836564352783	0	lncRNA	41454-2_{3001..3690}	n410285|NR_037177_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_6||-1.0868600|-0.2881875	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410285|NR_037177_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_6||-1.0868600|-0.2881875	chr6	  4295680	  4296369	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24754_PI429285431	1.2207936	A	1.5378969	A	0.802679913087874	0	lncRNA	26298-1_{1..794}	lnc-C4orf51-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C4orf51-1:1	chr4	146760301	146761094	+	lnc-C4orf51-1	lnc-C4orf51-1:1	ENSG00000251687.1	RP11-181K12.2	ZNF827	NA	chr4:146750301-146770732	inner
CUST_14216_PI429285431	6.637355	P	6.6128345	P	1.01714157460011	0	lncRNA	15872-1_{1..321}	lnc-SYCE3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYCE3-1:1	chr22	 50983216	 50983536	-	lnc-SYCE3-1	lnc-SYCE3-1:1	XLOC_014418	linc-ODF3B	KLHDC7B	NA	chr22:50986462-50989452	inter
CUST_10528_PI429285431	0.89378476	A	1.2759769	A	0.767270855066129	0	lncRNA	12056-1_{1..739}	lnc-ADAMTS16-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAMTS16-3:2	chr5	  4774350	  4775088	+	lnc-ADAMTS16-3	lnc-ADAMTS16-3:2	XLOC_004267	linc-ADAMTS16-3	NA	NA	NA	inter
CUST_14340_PI429285431	3.8915286	P	4.3444004	P	0.730587107431702	0	lncRNA	15997-1_{1..808}	lnc-METTL11A-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-METTL11A-4:1	chr9	132200145	132200952	+	lnc-METTL11A-4	lnc-METTL11A-4:1	XLOC_007586	linc-METTL11A-3	NA	NA	NA	inter
CUST_50295_PI429285431	1.326812	A	0.9640097	A	1.28592125488287	0	lncRNA	54014-1_{1..402}	hg19_lincRNAsTranscripts_TCONS_l2_00030001 range=chr9:90441425-90452141 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030001 range=chr9:90441425-90452141 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 90441425	 90441826	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13545_PI429285431	0.9077763	A	0.90666866	A	1.00076805234434	0	lncRNA	15185-1_{1..263}	lnc-MARCKS-5:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MARCKS-5:16	chr6	114775079	114775341	+	lnc-MARCKS-5	lnc-MARCKS-5:16	XLOC_005441	linc-NT5DC1-3	NA	NA	NA	inter
CUST_45043_PI429285431	0.9044699	A	0.9114976	A	0.995140614760809	0	lncRNA	49539-1_{1..2511}	"gi|397139230|ref|XR_108798.2| PREDICTED: Homo sapiens uncharacterized LOC100506413 (LOC100506413), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139230|ref|XR_108798.2| PREDICTED: Homo sapiens uncharacterized LOC100506413 (LOC100506413), misc_RNA"	NA	NA	NA	NA	NA	XR_108798.2	NA	NA	NA	NA	NA	Unknown
CUST_13387_PI429285431	0.89212185	A	0.88994366	A	1.00151094658851	0	lncRNA	15022-1_{1..2134}	lnc-TRMT11-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TRMT11-1:2	chr6	126398384	126400517	+	lnc-TRMT11-1	lnc-TRMT11-1:2	XLOC_005458	linc-CENPW-2	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50"	NA	inter
CUST_26658_PI429285431	0.88828075	A	0.9145912	A	0.981928273795474	0	lncRNA	28158-1_{1..594}	lnc-NARF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-NARF-1:1	chr17	 80535899	 80536492	+	lnc-NARF-1	lnc-NARF-1:1	ENSG00000262652.1	RP13-638C3.2	FOXK2	NA	chr17:80525899-80546492	inner
CUST_8902_PI429285431	10.516581	P	10.05427	P	1.377747013607	0	lncRNA	10437-1_{1..2564}	lnc-AL391421.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL391421.1-3:1	chr10	 79397372	 79399935	+	lnc-AL391421.1-3	lnc-AL391421.1-3:1	ENSG00000250578	ENST00000513498	KCNMA1	"hg19_refFlat_KCNMA1:range=chr10:79396145-793974005'pad=0,hg19_refFlat_KCNMA1:range=chr10:79396145-793974005'pad=0 3'pad=0 strand=- repeatMasking=none,-102.90chr10:79387372-79397577"	NA	inner
CUST_47745_PI429285431	0.8899033	A	0.8878117	A	1.00145083809158	0	lncRNA	51692-2_{3001..6000}	"gi|385137106|ref|NR_047644.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 74, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137106|ref|NR_047644.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 74, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047644.1	NA	NA	NA	NA	NA	inter
CUST_4200_PI429285431	2.8501613	A	3.1784663	A	0.796471696491719	0	lncRNA	4159-1_{1..1710}	"transcript_id ""ENST00000483544.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000483544.1"" | genecode_v17"	chr12	 24719898	 24721607	-	ENSG00000197503.4	ENST00000483544.1	LINC00477	LINC00477-001	SOX5	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_C16orf88:range=chr16:19718232-197263575'pad=0,hg19_refFlat_C16orf88:range=chr16:19718232-197263575'pad=0 3'pad=0 strand=- repeatMasking=none,-95.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50chr12:24709898-24715380"	NA	inter
CUST_27911_PI429285431	0.90313345	A	1.0025373	A	0.933418618810812	0	lncRNA	29511-1_{1..794}	n325154|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330765|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330765|-1.2177500|-0.3960430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325154|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330765|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330765|-1.2177500|-0.3960430	chr2	122264489	122265282	+	NA	NA	NA	NA	CLASP1	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.20chr2:122254489-122280748"	NA	inner
CUST_28603_PI429285431	3.6591904	P	3.803109	P	0.90505752676146	0	lncRNA	30285-1_{1..415}	n325966|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048117|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048117|-1.2982100|-0.3105093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325966|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048117|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048117|-1.2982100|-0.3105093	chr10	 54403253	 54403667	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007011	3.7574039	P	3.9063773	P	0.901892007056741	0	lncRNA	TCONS_00018571	NA	NA	NA	NA	XLOC_008897	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008897), lincRNA [TCONS_00018571]"	chr10:91452327-91446853	hs|10q23.31	Agilent_HUMAN_G3V2	TCONS_00018571	TCONS_00018571	chr10	 91446853	 91452327	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008040	6.263019	P	6.3909726	P	0.915128600047367	0	lncRNA	TCONS_00021737	NA	NA	NA	NA	XLOC_010326	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010326), lincRNA [TCONS_00021737]"	chr13:28314140-28314199	hs|13q12.2	Agilent_HUMAN_G3V2	TCONS_00021737	TCONS_00021737	chr13	 28314140	 28314199	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014170	6.1852775	P	6.33368	P	0.902248972334399	0	lncRNA	XR_108682	XR_108682	XR_108682	NA	Hs.346489	LOC100506885	uncharacterized LOC100506885	NA	THC2606520	NA	"PREDICTED: Homo sapiens hypothetical LOC100506885, transcript variant 1 (LOC100506885), miscRNA [XR_108682]"	chr6:19804014-19803955	hs|6p22.3	Agilent_HUMAN_G3V2	XR_108682	XR_108682	chr6	 19803955	 19804014	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29770_PI429285431	9.714104	P	8.185345	P	2.88537533592581	0	lncRNA	31533-1_{1..745}	n333465|BC022825|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090677|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090677|3.0393500|-0.1542517	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333465|BC022825|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090677|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090677|3.0393500|-0.1542517	chr8	 98656495	 98657239	+	NA	NA	NA	NA	MTDH	NA	chr8:98646495-98683425	inner
CUST_25467_PI429285431	1.2609749	A	1.2881749	A	0.981323014167354	0	lncRNA	26997-1_{1..865}	lnc-C11orf82-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf82-1:1	chr11	 82533113	 82533977	+	lnc-C11orf82-1	lnc-C11orf82-1:1	ENSG00000255263.1	RP11-718B12.3	PRCP	NA	chr11:82535409-82543921	inter
CUST_15688_PI429285431	2.0534792	A	2.8475115	A	0.576729890179543	0	lncRNA	17375-1_{1..503}	lnc-FAM174B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-FAM174B-3:1	chr15	 93014471	 93014973	-	lnc-FAM174B-3	lnc-FAM174B-3:1	XLOC_011583	linc-VPS33B-4	ST8SIA2	NA	chr15:93004471-93011958	inter
CUST_38484_PI429285431	0.9136252	A	0.8973869	A	1.011319113686	0	lncRNA	39502-1_{1..3000}	n382992|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ehh.2||1.6731400|-0.3807325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n382992|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ehh.2||1.6731400|-0.3807325	chr16	 53400850	 53403849	-	NA	NA	NA	NA	LOC643802	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr16:53403274-53405041"	NA	inner
CUST_37418_PI429285431	4.122745	P	3.9081411	P	1.16038528036953	0	lncRNA	38524-1_{1..3000}	n345873|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1422|NULL|-1.1956600|-0.2180165	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345873|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1422|NULL|-1.1956600|-0.2180165	chr1	  3653489	  3656488	-	NA	NA	NA	NA	CCDC27	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70chr1:3668965-3673820"	NA	inter
CUST_2130_PI429285431	1.2247752	A	0.9207459	A	1.23458768014234	0	lncRNA	2121-1_{1..599}	"transcript_id ""ENST00000511054.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511054.1"" | genecode_v17"	chr5	 33009100	 33009698	+	ENSG00000249102.1	ENST00000511054.1	CTD-2066L21.1	CTD-2066L21.1-001	NA	NA	NA	inter
CUST_18416_PI429285431	5.6725864	P	5.350709	P	1.2499560769989	0	lncRNA	20141-1_{1..2904}	lnc-NKAIN3-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKAIN3-3:5	chr8	 64122241	 64125144	+	lnc-NKAIN3-3	lnc-NKAIN3-3:5	ENSG00000185728	YTHDF3	YTHDF3	NA	chr8:64112241-64125346	inner
CUST_5662_PI429285431	0.99900025	A	0.9734144	A	1.01789295443977	0	lncRNA	5588-1_{1..543}	"transcript_id ""ENST00000568136.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568136.1"" | genecode_v17"	chr16	 82529598	 82530140	-	ENSG00000261285.1	ENST00000568136.1	RP11-481E4.2	RP11-481E4.2-002	NA	"hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0,hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50"	NA	inter
CUST_19377_PI429285431	8.509829	P	8.480553	P	1.02049987099892	0	lncRNA	21039-1_{1..548}	lnc-RFC5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RFC5-1:1	chr12	118328551	118329098	+	lnc-RFC5-1	lnc-RFC5-1:1	ENSG00000256071.1	RP11-465L8.1	KSR2	NA	chr12:118318551-118338813	inner
CUST_450_PI429285431	0.9230752	A	0.92658484	A	0.997570259538741	0	lncRNA	442-1_{1..487}	"transcript_id ""ENST00000594899.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594899.1"" | genecode_v17"	chr1	149587502	149587988	-	ENSG00000269614.1	ENST00000594899.1	RP11-277L2.5	RP11-277L2.5-001	NA	NA	NA	inter
CUST_30807_PI429285431	4.5213275	P	4.4704275	P	1.0359109571955	0	lncRNA	32594-1_{1..306}	n336720|Z74666|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328009|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328009|2.2590100|-0.0795798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336720|Z74666|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328009|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328009|2.2590100|-0.0795798	chr2	 89399366	 89399671	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47075_PI429285431	6.7543373	P	7.1319723	P	0.769698318138919	0	lncRNA	51159-1_{1..2233}	"gi|358438340|ref|NR_045573.1| Homo sapiens inositol-3-phosphate synthase 1 (ISYNA1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|358438340|ref|NR_045573.1| Homo sapiens inositol-3-phosphate synthase 1 (ISYNA1), transcript variant 5, non-coding RNA"	Chr19	 18545198	 18547430	-	51477	NR_045573.1	NA	NA	NA	NA	NA	inter
CUST_14544_PI429285431	0.91535175	A	1.1420796	A	0.854570931950752	0	lncRNA	16212-1_{1..569}	lnc-FSTL5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FSTL5-1:1	chr4	162172914	162173482	-	lnc-FSTL5-1	lnc-FSTL5-1:1	XLOC_004142	linc-C4orf45-1	NA	NA	NA	inter
CUST_3801_PI429285431	4.1047173	P	3.8480089	P	1.1947496955896	0	lncRNA	3769-1_{1..800}	"transcript_id ""ENST00000601505.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601505.1"" | genecode_v17"	chr10	109799603	109800402	-	ENSG00000229981.2	ENST00000601505.1	RP11-215N21.1	RP11-215N21.1-002	NA	NA	NA	inter
LNCA_21_P0012833	0.91991466	A	0.90926677	A	1.00740785835811	0	lncRNA	ENST00000506596	NA	NA	NA	NA	XLOC_l2_011636	NA	ENST00000506596	THC2742773	NA	"BROAD Institute lincRNA (XLOC_l2_011636), lincRNA [TCONS_l2_00022372]"	chr5:74967395-74967454	hs|5q13.3	Agilent_HUMAN_G3V2	ENST00000506596	ENST00000506596	chr5	 74967395	 74967454	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38138_PI429285431	2.447668	A	2.293171	A	1.11303348807111	0	lncRNA	39209-1_{1..1945}	n381291|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gkr.1||-1.1541400|-0.2970351	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381291|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gkr.1||-1.1541400|-0.2970351	chr1	175526123	175528067	+	NA	NA	NA	NA	TNR	NA	chr1:175516123-175543005	inner
CUST_37021_PI429285431	1.8871634	A	2.0524402	A	0.891757407629624	0	lncRNA	38159-1_{1..990}	n345476|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1025|NULL|-1.3374900|-0.2485549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345476|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1025|NULL|-1.3374900|-0.2485549	chr1	180931249	180932238	-	NA	NA	NA	NA	STX6	NA	chr1:180942175-180947190	inter
LNCA_21_P0010624	0.9223022	A	0.9108398	A	1.00797677654555	0	lncRNA	TCONS_l2_00001280	NA	NA	NA	NA	XLOC_l2_000941	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000941), lincRNA [TCONS_l2_00001280]"	chr1:65466915-65466856	hs|1p31.3	Agilent_HUMAN_G3V2	TCONS_l2_00001280	TCONS_l2_00001280	chr1	 65466856	 65466915	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48978_PI429285431	2.955404	A	3.2977548	A	0.788755026991314	0	lncRNA	52817-1_{1..668}	hg19_lincRNAsTranscripts_TCONS_l2_00019086 range=chr3:195341850-195352827 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019086 range=chr3:195341850-195352827 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	195341850	195342517	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10007_PI429285431	4.712943	P	5.271958	P	0.678765432638127	0	lncRNA	11533-1_{1..472}	lnc-C9orf86-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf86-1:1	chr9	139736779	139737250	+	lnc-C9orf86-1	lnc-C9orf86-1:1	XLOC_007617	linc-C9orf172	C9orf86	NA	chr9:139726779-139735639	inter
CUST_34670_PI429285431	5.49522	P	5.9907827	P	0.709284978943	0	lncRNA	36122-1_{1..619}	n341574|CR593581|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4045|NULL|-0.7925740|-0.1864686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341574|CR593581|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4045|NULL|-0.7925740|-0.1864686	chr8	103906897	103907515	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1021_PI429285431	0.9013375	A	0.9010055	A	1.0002301513447	0	lncRNA	1010-1_{1..814}	"transcript_id ""ENST00000562665.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562665.1"" | genecode_v17"	chr2	110992312	110993125	+	ENSG00000261760.2	ENST00000562665.1	RP11-1223D19.1	RP11-1223D19.1-004	LOC100287119	NA	chr2:111025028-111033767	inter
CUST_48877_PI429285431	5.6046996	P	5.7546577	P	0.901276637888129	0	lncRNA	52714-1_{1..413}	hg19_lincRNAsTranscripts_TCONS_l2_00019333 range=chr3:63752130-63768202 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019333 range=chr3:63752130-63768202 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 63752130	 63752542	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20021_PI429285431	3.7555761	P	5.0092955	P	0.419365649691091	0	lncRNA	21674-1_{1..525}	lnc-MAP3K9-3:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP3K9-3:14	chr14	 71761980	 71762504	-	lnc-MAP3K9-3	lnc-MAP3K9-3:14	ENSG00000259146.1	RP1-261D10.2	NA	NA	NA	inter
LNCA_21_P0011769	2.1722538	A	2.108968	A	1.04484272723771	0	lncRNA	ENST00000453968	NA	NA	NA	NA	XLOC_l2_006704	NA	ENST00000453968	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006704), lincRNA [TCONS_l2_00013318]"	chr19:36092344-36092403	hs|19q13.12	Agilent_HUMAN_G3V2	ENST00000453968	ENST00000453968	chr19	 36092344	 36092403	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19554_PI429285431	0.89325964	A	0.9013926	A	0.994378521681235	0	lncRNA	21210-1_{1..568}	lnc-RALGAPA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RALGAPA2-2:1	chr20	 20248138	 20248705	-	lnc-RALGAPA2-2	lnc-RALGAPA2-2:1	ENSG00000243810.1	RP5-1096J16.1	C20orf26	NA	chr20:20238138-20258453	inner
CUST_51353_PI429285431	4.1698923	P	3.8243508	P	1.27062780947058	0	lncRNA	54949-1_{1..380}	hg19_lincRNAsTranscripts_TCONS_l2_00008764 range=chr15:79024303-79024782 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008764 range=chr15:79024303-79024782 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 79024303	 79024682	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46259_PI429285431	2.0422006	A	0.8918421	A	2.21969045373607	0	lncRNA	50498-1_{1..2130}	"gi|302318967|ref|NR_036486.1| Homo sapiens FGF14 intronic transcript 1 (non-protein coding) (FGF14-IT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302318967|ref|NR_036486.1| Homo sapiens FGF14 intronic transcript 1 (non-protein coding) (FGF14-IT1), non-coding RNA"	Chr13	102944670	102946799	-	283480	NR_036486.1	NA	NA	NA	NA	NA	inter
CUST_50283_PI429285431	2.5792012	A	1.4562721	A	2.17788699766936	0	lncRNA	54006-1_{1..445}	hg19_lincRNAsTranscripts_TCONS_l2_00029404 range=chr9:75478227-75488056 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029404 range=chr9:75478227-75488056 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 75478227	 75478671	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45853_PI429285431	10.67803	P	10.762568	P	0.943086495925231	0	lncRNA	50183-1_{1..2585}	"gi|203097758|ref|NR_024147.1| Homo sapiens ring finger protein 121 (RNF121), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|203097758|ref|NR_024147.1| Homo sapiens ring finger protein 121 (RNF121), transcript variant 2, non-coding RNA"	Chr11	 71639768	 71642352	+	55298	NR_024147.1	NA	NA	NA	NA	NA	inter
CUST_10913_PI429285431	0.9118279	A	0.9231254	A	0.99219975080187	0	lncRNA	12457-1_{1..2707}	lnc-SLC2A13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC2A13-1:1	chr12	 40552238	 40554944	-	lnc-SLC2A13-1	lnc-SLC2A13-1:1	XLOC_010052	linc-SLC2A13-4	NA	NA	NA	inter
CUST_50291_PI429285431	11.506787	P	11.456487	P	1.03548022351468	0	lncRNA	54010-1_{1..238}	hg19_lincRNAsTranscripts_TCONS_l2_00028855 range=chr9:82006182-82006559 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028855 range=chr9:82006182-82006559 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 82006182	 82006419	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50392_PI429285431	3.8505852	P	4.0283723	P	0.884057982789278	0	lncRNA	54098-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030415 range=chrX:281389-284630 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030415 range=chrX:281389-284630 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	   281389	   284388	-	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80"	NA	inter
CUST_29372_PI429285431	2.326935	A	2.847913	A	0.696899246445159	0	lncRNA	31124-1_{1..298}	n332638|AB019573|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000058617|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000058617|0.2031480|-0.2713903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332638|AB019573|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000058617|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000058617|0.2031480|-0.2713903	chr4	 57514709	 57515006	-	NA	NA	NA	NA	HOPX	NA	chr4:57514154-57532067	inner
CUST_24022_PI429285431	1.0469024	A	1.879528	A	0.561506411076052	0	lncRNA	25575-1_{1..395}	lnc-POLE3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POLE3-1:1	chr9	116352176	116352570	-	lnc-POLE3-1	lnc-POLE3-1:1	ENSG00000237073.1	RP11-168K11.2	RGS3	NA	chr9:116342176-116360018	inner
CUST_29157_PI429285431	4.270525	P	4.272698	P	0.998494924939853	0	lncRNA	30900-1_{1..306}	n326668|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000012180|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000012180|-0.7369500|-0.1139923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326668|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000012180|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000012180|-0.7369500|-0.1139923	chr1	 27075210	 27075515	+	NA	NA	NA	NA	ARID1A	NA	chr1:27065210-27087323	inner
LNCA_21_P0007717	0.9190811	A	0.92495847	A	0.995934404557235	0	lncRNA	TCONS_00020821	NA	NA	NA	NA	XLOC_010109	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010109), lincRNA [TCONS_00020821]"	chr12:67285652-67285593	hs|12q14.3	Agilent_HUMAN_G3V2	TCONS_00020821	TCONS_00020821	chr12	 67285593	 67285652	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36439_PI429285431	4.0790067	P	4.191659	P	0.924886155546818	0	lncRNA	37653-1_{1..1372}	n344953|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_502|NULL|-1.3324300|-0.1748390	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344953|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_502|NULL|-1.3324300|-0.1748390	chr7	 36123854	 36125225	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6826_PI429285431	0.923234	A	0.913413	A	1.00683062146335	0	lncRNA	6774-1_{1..1380}	"transcript_id ""ENST00000441013.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441013.1"" | genecode_v17"	chr21	 26758133	 26759512	-	ENSG00000185433.4	ENST00000441013.1	LINC00158	LINC00158-001	NA	NA	NA	inter
CUST_25204_PI429285431	5.718592	P	5.864872	P	0.903577342347793	0	lncRNA	26735-1_{1..507}	lnc-PRDM4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRDM4-4:1	chr12	108011368	108011874	-	lnc-PRDM4-4	lnc-PRDM4-4:1	ENSG00000257579.1	RP11-128P10.1	BTBD11	"hg19_refFlat_BTBD11:range=chr12:107712718-1080514955'pad=0,hg19_refFlat_BTBD11:range=chr12:107712718-1080514955'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.70;hg19_refFlat_BTBD11:range=chr12:107974684-1080514955'pad=0,hg19_refFlat_BTBD11:range=chr12:107974684-1080514955'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.70chr12:108001368-108021498"	NA	inner
CUST_26176_PI429285431	0.9124267	A	0.9059574	A	1.00449424602184	0	lncRNA	27687-1_{1..545}	lnc-ANKRD42-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD42-3:1	chr11	 83358916	 83359460	+	lnc-ANKRD42-3	lnc-ANKRD42-3:1	ENSG00000255311.1	RP11-160H12.2	DLG2	NA	chr11:83348916-83369086	inner
CUST_32736_PI429285431	3.5639267	P	3.7772489	P	0.862548688288038	0	lncRNA	34376-1_{1..1135}	n339364|BC039681|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1796|NULL|1.5500600|-0.1817959	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n339364|BC039681|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1796|NULL|1.5500600|-0.1817959	chr3	 52273279	 52274413	+	NA	NA	NA	NA	PPM1M	NA	chr3:52279809-52284615	inter
CUST_51951_PI429285431	5.867514	P	5.942638	P	0.949260528264025	0	lncRNA	55493-1_{1..524}	hg19_lincRNAsTranscripts_TCONS_l2_00016544 range=chr20:25829252-25840566 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016544 range=chr20:25829252-25840566 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	 25829252	 25829775	-	NA	NA	NA	NA	LOC100289375	NA	chr20:25825857-25848100	inter
CUST_42872_PI429285431	7.751983	P	7.797101	P	0.969210540637725	0	lncRNA	45937-1_{1..72}	ENST00000363610 ncrna:snoRNA chromosome:GRCh37:14:101455467:101455538:1 gene:ENSG00000200480 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363610 ncrna:snoRNA chromosome:GRCh37:14:101455467:101455538:1 gene:ENSG00000200480 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101455467	101455538	+	ENSG00000200480	ENST00000363610	NA	NA	NA	NA	NA	inter
CUST_12298_PI429285431	0.90797484	A	0.90552473	A	1.00169972974436	0	lncRNA	13909-1_{1..1084}	lnc-CMC1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMC1-2:2	chr3	 27754906	 27755989	+	lnc-CMC1-2	lnc-CMC1-2:2	XLOC_002602	linc-CMC1-2	EOMES	NA	chr3:27757868-27763785	inter
CUST_24856_PI429285431	1.3467349	A	1.2043183	A	1.10375241922276	0	lncRNA	26396-1_{1..836}	lnc-RPRML-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPRML-3:4	chr17	 45177201	 45178036	-	lnc-RPRML-3	lnc-RPRML-3:4	ENSG00000262879.1	RP11-156P1.3	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50"	NA	inter
CUST_20476_PI429285431	3.2983649	A	3.2609742	P	1.0262560307755	0	lncRNA	22119-1_{1..543}	lnc-AC005481.5.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC005481.5.1-1:4	chr7	157655237	157655779	+	lnc-AC005481.5.1-1	lnc-AC005481.5.1-1:4	ENSG00000233038.1	AC011899.9	PTPRN2	NA	chr7:157645237-157665703	inner
LNCA_21_P0010240	2.0822382	A	0.91526175	A	2.24540619069941	0	lncRNA	TCONS_00029009	NA	NA	NA	NA	XLOC_013932	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013932), lincRNA [TCONS_00029009]"	chr21:37757138-37757197	hs|21q22.12	Agilent_HUMAN_G3V2	TCONS_00029009	TCONS_00029009	chr21	 37757138	 37757197	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38634_PI429285431	4.007624	P	4.720577	P	0.610070129626719	0	lncRNA	39637-1_{1..515}	n383830|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vvr.1||-0.9881520|-0.2550022	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383830|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vvr.1||-0.9881520|-0.2550022	chr2	235904746	235905260	+	NA	NA	NA	NA	SH3BP4	NA	chr2:235894746-235915261	inner
CUST_48345_PI429285431	3.4471076	P	4.293478	P	0.55618224677584	0	lncRNA	52201-1_{1..1841}	hg19_lincRNAsTranscripts_TCONS_l2_00001272 range=chr1:65444183-65455589 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001272 range=chr1:65444183-65455589 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 65444183	 65446023	-	NA	NA	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40"	NA	inter
CUST_34618_PI429285431	0.9192914	A	0.9172587	A	1.00140995332479	0	lncRNA	36073-1_{1..1705}	n341508|BC032030|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3978|NULL|-1.0253600|-0.2754773	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341508|BC032030|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3978|NULL|-1.0253600|-0.2754773	chr8	 59168329	 59170033	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43236_PI429285431	2.3004448	A	3.3337555	P	0.488587649232994	0	lncRNA	48053-1_{1..477}	ENST00000595277 havana:sense_intronic chromosome:GRCh37:19:8943741:8944217:1 gene:ENSG00000269400 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000595277 havana:sense_intronic chromosome:GRCh37:19:8943741:8944217:1 gene:ENSG00000269400 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	  8943741	  8944217	+	ENSG00000269400	ENST00000595277	NA	NA	MBD3L1	NA	chr19:8953269-8954016	inter
CUST_44901_PI429285431	7.6824646	P	7.4399276	P	1.18307128113318	0	lncRNA	49421-1_{1..3000}	"gi|210147393|ref|NR_024278.1| Homo sapiens uncharacterized LOC646762 (LOC646762), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|210147393|ref|NR_024278.1| Homo sapiens uncharacterized LOC646762 (LOC646762), non-coding RNA"	Chr7	 29685538	 29688537	-	646762	NR_024278.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30"	NA	inter
CUST_41610_PI429285431	0.9134803	A	0.9199356	A	0.995535522545806	0	lncRNA	42975-1_{1..79}	ENST00000577987 ncrna:miRNA chromosome:GRCh37:2:114478867:114478945:-1 gene:ENSG00000265429 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577987 ncrna:miRNA chromosome:GRCh37:2:114478867:114478945:-1 gene:ENSG00000265429 gene_biotype:miRNA transcript_biotype:miRNA	chr2	114478867	114478945	-	ENSG00000265429	ENST00000577987	NA	NA	SLC35F5	NA	chr2:114471933-114488945	inner
CUST_29296_PI429285431	4.4341	P	5.0657263	P	0.645448413496763	0	lncRNA	31047-1_{1..235}	n332456|EU016553|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000484271|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000484271|0.6704120|-0.1473285	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332456|EU016553|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000484271|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000484271|0.6704120|-0.1473285	chr15	 67457681	 67457915	+	NA	NA	NA	NA	SMAD3	NA	chr15:67447681-67483649	inner
CUST_11160_PI429285431	2.5032206	A	1.9439704	A	1.47350320657816	0	lncRNA	12718-1_{1..599}	lnc-CTD-2523D13.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2523D13.1.1-1:1	chr11	119610241	119610839	+	lnc-CTD-2523D13.1.1-1	lnc-CTD-2523D13.1.1-1:1	XLOC_009299	linc-OAF-6	NA	NA	NA	inter
CUST_31339_PI429285431	2.0471644	A	1.5555811	A	1.40598704379343	0	lncRNA	33121-1_{1..1541}	n337807|S52624|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|189|NULL|3.5664000|-0.1368171	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337807|S52624|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|189|NULL|3.5664000|-0.1368171	chr1	 28476183	 28477723	-	NA	NA	NA	NA	DNAJC8	NA	chr1:28526789-28530663	inner
CUST_47447_PI429285431	5.2807283	P	5.4570045	P	0.884984320544679	0	lncRNA	51479-1_{1..2311}	"gi|226437569|ref|NR_027464.1| Homo sapiens apoptosis-inducing factor, mitochondrion-associated, 3 (AIFM3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226437569|ref|NR_027464.1| Homo sapiens apoptosis-inducing factor, mitochondrion-associated, 3 (AIFM3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_027464.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012713	0.909194	A	0.9028068	A	1.00443708450901	0	lncRNA	ENST00000511200	NA	NA	NA	NA	XLOC_l2_010591	NA	ENST00000511200	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010591), lincRNA [TCONS_l2_00021533]"	chr4:14128456-14128742	hs|4p15.33	Agilent_HUMAN_G3V2	ENST00000511200	ENST00000511200	chr4	 14128456	 14128742	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43428_PI429285431	0.91319025	A	0.9184202	A	0.996381437736256	0	lncRNA	48237-1_{1..2303}	"gi|336594935|ref|NR_038928.1| Homo sapiens uncharacterized LOC339442 (LOC339442), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|336594935|ref|NR_038928.1| Homo sapiens uncharacterized LOC339442 (LOC339442), non-coding RNA"	Chr1	 38674706	 38677008	-	339442	NR_038928.1	NA	NA	NA	NA	NA	inter
CUST_29002_PI429285431	8.156822	P	7.937893	P	1.16386925497151	0	lncRNA	30726-1_{1..476}	n326486|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000032165|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000032165|-0.9935950|-0.1338875	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326486|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000032165|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000032165|-0.9935950|-0.1338875	chr1	110172499	110172974	+	NA	NA	NA	NA	AMPD2	NA	chr1:110162499-110174677	inner
CUST_49063_PI429285431	0.9198526	A	0.9249227	A	0.996491842494188	0	lncRNA	52888-1_{1..657}	hg19_lincRNAsTranscripts_TCONS_l2_00021810 range=chr4:1109048-1147514 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021810 range=chr4:1109048-1147514 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  1109048	  1109704	-	NA	NA	NA	NA	RNF212	NA	chr4:1099048-1107352	inter
CUST_43520_PI429285431	2.0775793	A	3.0373132	A	0.514151738053149	0	lncRNA	48304-1_{1..954}	"gi|300244498|ref|NR_033998.1| Homo sapiens hCG2028352-like (LOC729970), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300244498|ref|NR_033998.1| Homo sapiens hCG2028352-like (LOC729970), non-coding RNA"	Chr1	 95393584	 95394537	+	729970	NR_033998.1	NA	NA	NA	NA	NA	inter
CUST_17374_PI429285431	1.178951	A	0.8869904	A	1.22430295623123	0	lncRNA	19095-1_{1..1453}	lnc-CLLU1.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLLU1.1-1:5	chr12	 92876304	 92877756	+	lnc-CLLU1.1-1	lnc-CLLU1.1-1:5	XLOC_009835	linc-C12orf74-2	NA	NA	NA	inter
CUST_2998_PI429285431	1.4627237	A	0.91093504	A	1.46590200187853	0	lncRNA	2978-1_{1..3000}	"transcript_id ""ENST00000520390.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000520390.1"" | genecode_v17"	chr8	  9182561	  9185560	+	ENSG00000254235.1	ENST00000520390.1	RP11-115J16.1	RP11-115J16.1-001	NA	NA	NA	inter
CUST_1731_PI429285431	0.89697474	A	0.89992774	A	0.997955229772612	0	lncRNA	1717-1_{1..2404}	"transcript_id ""ENST00000505018.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505018.1"" | genecode_v17"	chr4	 33897961	 33900364	-	ENSG00000250954.1	ENST00000505018.1	RP11-79E3.3	RP11-79E3.3-001	NA	NA	NA	inter
LNCA_21_P0009502	7.1175537	P	7.273808	P	0.897351862910839	0	lncRNA	TCONS_00026647	NA	NA	NA	NA	XLOC_012724	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012724), lincRNA [TCONS_00026647]"	chr18:73933657-73933716	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026647	TCONS_00026647	chr18	 73933657	 73933716	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011059	0.903662	A	1.6637323	A	0.59046755756487	0	lncRNA	TCONS_l2_00005792	NA	NA	NA	NA	XLOC_l2_003072	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003072), lincRNA [TCONS_l2_00005792]"	chr12:80815145-80815204	hs|12q21.31	Agilent_HUMAN_G3V2	TCONS_l2_00005792	TCONS_l2_00005792	chr12	 80815145	 80815204	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2608_PI429285431	0.90161043	A	1.4341587	A	0.691332536225213	0	lncRNA	2595-1_{1..524}	"transcript_id ""ENST00000421737.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421737.1"" | genecode_v17"	chr6	113749742	113750265	-	ENSG00000232316.1	ENST00000421737.1	RP1-124C6.1	RP1-124C6.1-002	NA	NA	NA	inter
CUST_17639_PI429285431	5.1091805	P	5.665702	P	0.679939599755527	0	lncRNA	19367-1_{1..260}	lnc-INSIG1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INSIG1-3:1	chr7	154996750	154997009	+	lnc-INSIG1-3	lnc-INSIG1-3:1	XLOC_006302	linc-INSIG1-3	NA	NA	NA	inter
CUST_34782_PI429285431	6.100581	P	6.221663	P	0.91949778218817	0	lncRNA	36219-1_{1..1655}	n341689|AF176705|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4160|NULL|12.8257000|-0.0721870	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341689|AF176705|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4160|NULL|12.8257000|-0.0721870	chr9	 37531912	 37533566	-	NA	NA	NA	NA	FBXO10	NA	chr9:37521912-37576250	inner
CUST_19446_PI429285431	2.10806	A	2.620417	A	0.701076120084693	0	lncRNA	21105-1_{1..802}	lnc-PSMB11-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PSMB11-1:2	chr14	 23468165	 23468966	+	lnc-PSMB11-1	lnc-PSMB11-1:2	ENSG00000258457.1	RP11-298I3.4	C14orf93	"hg19_refFlat_C14orf93:range=chr14:23456424-234682325'pad=0,hg19_refFlat_C14orf93:range=chr14:23456424-234682325'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50chr14:23458165-23478287"	NA	inner
CUST_17519_PI429285431	1.309653	A	0.8897706	A	1.33781849925918	0	lncRNA	19243-2_{3001..4988}	lnc-TPM4-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPM4-2:10	chr19	 16138263	 16140250	+	lnc-TPM4-2	lnc-TPM4-2:10	XLOC_012983	linc-TPM4-2	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.39;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20"	NA	inter
CUST_36128_PI429285431	1.9885199	A	2.2117338	A	0.8566549341095	0	lncRNA	37416-1_{1..3000}	n344703|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_252|NULL|-1.2792600|-0.3596951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344703|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_252|NULL|-1.2792600|-0.3596951	chr2	186897622	186900621	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
CUST_16637_PI429285431	1.3104304	A	0.8906589	A	1.33771566507376	0	lncRNA	18339-1_{1..263}	lnc-ALDH1A1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ALDH1A1-5:1	chr9	 76028225	 76028487	-	lnc-ALDH1A1-5	lnc-ALDH1A1-5:1	XLOC_007737	linc-ALDH1A1-3	NA	NA	NA	inter
CUST_38333_PI429285431	2.633564	A	2.9875736	A	0.782406575419236	0	lncRNA	39379-1_{1..274}	n382049|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001veo.1||-1.0364000|-0.1913707	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382049|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001veo.1||-1.0364000|-0.1913707	chr13	 50884297	 50884570	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6070_PI429285431	0.89178354	A	0.88857496	A	1.00222649314348	0	lncRNA	5994-1_{1..554}	"transcript_id ""ENST00000562452.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562452.2"" | genecode_v17"	chr18	  5748818	  5749371	+	ENSG00000261738.2	ENST00000562452.2	RP11-945C19.1	RP11-945C19.1-002	NA	NA	NA	inter
CUST_12403_PI429285431	0.9045803	A	0.91118306	A	0.995433772583519	0	lncRNA	14016-1_{1..3000}	lnc-POLR3G-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLR3G-1:2	chr5	 89709154	 89712153	+	lnc-POLR3G-1	lnc-POLR3G-1:2	XLOC_004467	linc-POLR3G-1	CETN3	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20chr5:89699154-89705603"	NA	inter
CUST_27708_PI429285431	1.2816688	A	1.072108	A	1.15633610663609	0	lncRNA	29287-1_{1..461}	n324919|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080042|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080042|0.3159520|-0.2344136	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324919|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080042|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080042|0.3159520|-0.2344136	chr20	 60735568	 60736028	+	NA	NA	NA	NA	SS18L1	"hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30chr20:60725568-60747659"	NA	inner
CUST_35370_PI429285431	12.968642	P	13.304699	P	0.792203510829741	0	lncRNA	36777-2_{3001..3177}	n342415|BC050395|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4907|NULL|2.0683000|-0.2522056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342415|BC050395|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4907|NULL|2.0683000|-0.2522056	chr2	 61407583	 61407759	+	NA	NA	NA	NA	USP34	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_USP34:range=chr2:61415237-616978275'pad=0,hg19_refFlat_USP34:range=chr2:61415237-616978275'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80chr2:61414590-61426060"	NA	inner
CUST_27127_PI429285431	2.7272158	A	2.7727125	A	0.968956161262669	0	lncRNA	28662-1_{1..842}	n324242|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325956|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325956|0.3183600|-0.3095870	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324242|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325956|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325956|0.3183600|-0.3095870	chr7	 13345350	 13346191	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13289_PI429285431	1.2498952	A	1.6523967	A	0.756545365531435	0	lncRNA	14922-1_{1..374}	lnc-HTR3A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HTR3A-1:1	chr11	113887677	113888050	+	lnc-HTR3A-1	lnc-HTR3A-1:1	XLOC_009281	linc-ZBTB16	NA	NA	NA	inter
CUST_16393_PI429285431	2.1708615	A	2.0140915	A	1.114788480687	0	lncRNA	18088-1_{1..648}	lnc-ENPP4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENPP4-1:1	chr6	 46184319	 46184966	+	lnc-ENPP4-1	lnc-ENPP4-1:1	XLOC_005304	linc-SLC25A27-4	RCAN2	NA	chr6:46188469-46194920	inter
CUST_49595_PI429285431	1.5319645	A	1.1511968	A	1.30203452157748	0	lncRNA	53385-1_{1..1820}	hg19_lincRNAsTranscripts_TCONS_l2_00024998 range=chr6:158658351-158663662 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024998 range=chr6:158658351-158663662 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	158658351	158660170	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44037_PI429285431	1.3968666	A	1.6593235	A	0.833666980558169	0	lncRNA	48718-1_{1..512}	"gi|300360556|ref|NR_034036.1| Homo sapiens uncharacterized LOC100130452 (LOC100130452), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300360556|ref|NR_034036.1| Homo sapiens uncharacterized LOC100130452 (LOC100130452), non-coding RNA"	Chr2	197565358	197565869	-	100130452	NR_034036.1	NA	NA	NA	NA	NA	inter
CUST_51824_PI429285431	2.3262022	A	2.1867728	A	1.10146938779834	0	lncRNA	55377-1_{1..342}	hg19_lincRNAsTranscripts_TCONS_l2_00012488 range=chr19:36603674-36604503 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012488 range=chr19:36603674-36604503 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 36603674	 36604015	+	NA	NA	NA	NA	WDR62	NA	chr19:36593674-36596012	inner
CUST_37939_PI429285431	0.9152321	A	1.5487196	A	0.644616266722234	0	lncRNA	39029-1_{1..494}	n346485|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2035|NULL|-1.4222600|-0.3044273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346485|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2035|NULL|-1.4222600|-0.3044273	chr7	130491050	130491543	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31894_PI429285431	3.550538	P	4.265822	P	0.60908521929586	0	lncRNA	33625-1_{1..2798}	n338448|BX641081|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|845|NULL|-0.4818580|-0.2083664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338448|BX641081|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|845|NULL|-0.4818580|-0.2083664	chr1	201254348	201257145	+	NA	NA	NA	NA	PKP1	NA	chr1:201252580-201267019	inner
CUST_35152_PI429285431	0.8891508	A	0.8852544	A	1.00270442906261	0	lncRNA	36554-1_{1..357}	n342124|AF086026|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4607|NULL|-1.4223600|-0.3859826	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342124|AF086026|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4607|NULL|-1.4223600|-0.3859826	chr6	129616899	129617255	+	NA	NA	NA	NA	LAMA2	NA	chr6:129606899-129627245	inner
CUST_790_PI429285431	0.91744566	A	1.1021245	A	0.879844917410952	0	lncRNA	783-1_{1..522}	"transcript_id ""ENST00000456119.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000456119.1"" | genecode_v17"	chr2	 20068652	 20069173	+	ENSG00000228784.2	ENST00000456119.1	AC013400.2	AC013400.2-004	NA	NA	NA	inter
LNCA_21_P0003489	0.91189456	A	0.90251845	A	1.00652018869362	0	lncRNA	ENST00000514879	NA	NA	NA	NA	XLOC_004036	NA	ENST00000514879	NA	NA	"BROAD Institute lincRNA (XLOC_004036), lincRNA [TCONS_00007808]"	chr4:106462487-106462428	hs|4q24	Agilent_HUMAN_G3V2	ENST00000514879	ENST00000514879	chr4	106462428	106462487	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1241_PI429285431	3.196823	P	3.3025064	P	0.929364601305212	0	lncRNA	1233-1_{1..379}	"transcript_id ""ENST00000413311.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413311.1"" | genecode_v17"	chr2	216804031	216804409	-	ENSG00000226276.1	ENST00000413311.1	AC093382.1	AC093382.1-001	MREG	NA	chr2:216807314-216816442	inter
CUST_31531_PI429285431	1.9404957	A	2.5394504	A	0.660232151185882	0	lncRNA	33288-1_{1..827}	n338017|BC008289|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|404|NULL|6.2616900|-0.0606858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338017|BC008289|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|404|NULL|6.2616900|-0.0606858	chr22	 30642193	 30643019	+	NA	NA	NA	NA	LIF	NA	chr22:30636442-30642796	inner
CUST_2785_PI429285431	7.339896	P	8.600407	P	0.417396092580047	0	lncRNA	2769-1_{1..576}	"transcript_id ""ENST00000457000.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457000.1"" | genecode_v17"	chr7	 26591458	 26592033	+	ENSG00000233760.1	ENST00000457000.1	AC004947.2	AC004947.2-003	NA	NA	NA	inter
CUST_25418_PI429285431	1.6420743	A	1.3935697	A	1.18797510204491	0	lncRNA	26948-1_{1..295}	lnc-FGF10-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FGF10-3:3	chr5	 44808744	 44809038	-	lnc-FGF10-3	lnc-FGF10-3:3	ENSG00000251141.1	RP11-53O19.1	MRPS30	NA	chr5:44809027-44815616	inter
CUST_47679_PI429285431	0.9033214	A	1.318341	A	0.750009305183722	0	lncRNA	51660-1_{1..3000}	"gi|385137075|ref|NR_047613.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 43, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137075|ref|NR_047613.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 43, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047613.1	NA	NA	NA	NA	NA	inter
CUST_23477_PI429285431	10.567846	P	9.928334	P	1.5578021345466	0	lncRNA	25044-1_{1..804}	lnc-MACC1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MACC1-1:6	chr7	 20042343	 20043146	-	lnc-MACC1-1	lnc-MACC1-1:6	ENSG00000243004.1	AC005062.2	NA	"hg19_refFlat_RPL21:range=chr13:27827914-278306625'pad=0,hg19_refFlat_RPL21:range=chr13:27827914-278306625'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40"	NA	inter
CUST_17496_PI429285431	1.8544848	A	1.0570064	A	1.73806061845497	0	lncRNA	19222-1_{1..299}	lnc-GALM-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GALM-3:1	chr2	 38636235	 38636533	+	lnc-GALM-3	lnc-GALM-3:1	XLOC_001435	linc-GALM-2	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_3763_PI429285431	2.3050704	A	2.9379013	A	0.644909711531673	0	lncRNA	3731-1_{1..1860}	"transcript_id ""ENST00000428485.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428485.1"" | genecode_v17"	chr10	 91675246	 91677105	-	ENSG00000226159.1	ENST00000428485.1	RP11-478K7.2	RP11-478K7.2-001	NA	NA	NA	inter
CUST_13634_PI429285431	4.33705	P	4.8999743	P	0.676928657881507	0	lncRNA	15273-1_{1..765}	lnc-TANK-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TANK-1:3	chr2	162103386	162104150	+	lnc-TANK-1	lnc-TANK-1:3	XLOC_001728	linc-PSMD14	NA	NA	NA	inter
CUST_9571_PI429285431	8.047529	P	8.083599	P	0.97530813813355	0	lncRNA	11085-1_{1..624}	lnc-C14orf79-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf79-2:3	chr14	105564810	105565433	+	lnc-C14orf79-2	lnc-C14orf79-2:3	XLOC_010952	linc-BTBD6-1	NA	NA	NA	inter
CUST_36412_PI429285431	1.2163471	A	0.89147663	A	1.25255197525776	0	lncRNA	37630-1_{1..2052}	n344929|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_478|NULL|-1.3025500|-0.3515768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344929|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_478|NULL|-1.3025500|-0.3515768	chr6	148601418	148603469	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006458	1.8630226	A	2.9183874	A	0.481175536076759	0	lncRNA	ENST00000415252	NA	NA	NA	NA	XLOC_008205	NA	ENST00000415252	NA	NA	"BROAD Institute lincRNA (XLOC_008205), lincRNA [TCONS_00017080]"	chrX:106756365-106756306	hs|Xq22.3	Agilent_HUMAN_G3V2	ENST00000415252	ENST00000415252	chrX	106756306	106756365	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34997_PI429285431	1.9635979	A	1.5413265	A	1.34003566642155	0	lncRNA	36410-1_{1..1789}	n341922|BC042076|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4403|NULL|-0.8168730|-0.1872942	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341922|BC042076|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4403|NULL|-0.8168730|-0.1872942	chr12	 52638831	 52640619	-	NA	NA	NA	NA	KRT7	"hg19_refFlat_KRT8:range=chr12:53291212-533202335'pad=0,hg19_refFlat_KRT8:range=chr12:53291212-533202335'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30;hg19_refFlat_PRPH:range=chr12:49688984-496921365'pad=0,hg19_refFlat_PRPH:range=chr12:49688984-496921365'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.50;hg19_refFlat_KRT7:range=chr12:52627081-526425445'pad=0,hg19_refFlat_KRT7:range=chr12:52627081-526425445'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.50;hg19_refFlat_KRT8:range=chr12:53291212-532987655'pad=0,hg19_refFlat_KRT8:range=chr12:53291212-532987655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30chr12:52628831-52642709"	NA	inner
CUST_8118_PI429285431	4.537087	P	4.865567	P	0.79637508973168	0	lncRNA	9722-1_{1..2210}	lnc-HIST4H4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HIST4H4-2:1	chr12	 14930631	 14932840	-	lnc-HIST4H4-2	lnc-HIST4H4-2:1	ENSG00000246705	ENST00000501744	WBP11	"hg19_refFlat_H2AFJ:range=chr12:14927405-149277945'pad=0,hg19_refFlat_H2AFJ:range=chr12:14927405-149277945'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.20;hg19_refFlat_HIST1H2AL:range=chr6:27833133-278335255'pad=0,hg19_refFlat_HIST1H2AL:range=chr6:27833133-278335255'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_HIST1H2AK:range=chr6:27805725-278061175'pad=0,hg19_refFlat_HIST1H2AK:range=chr6:27805725-278061175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30chr12:14939412-14940934"	NA	inner
CUST_11234_PI429285431	1.1065189	A	1.224201	A	0.921667254576304	0	lncRNA	12792-1_{1..2460}	lnc-AC092031.1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092031.1-1:10	chr7	 96275036	 96277495	-	lnc-AC092031.1-1	lnc-AC092031.1-1:10	XLOC_006529	linc-SLC25A13	NA	NA	NA	inter
CUST_14144_PI429285431	1.1604843	A	0.90307695	A	1.19532866244965	0	lncRNA	15795-1_{1..582}	lnc-RP11-497E19.2.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-RP11-497E19.2.1-1:3	chr14	 85886028	 85886609	+	lnc-RP11-497E19.2.1-1	lnc-RP11-497E19.2.1-1:3	XLOC_010889	linc-FLRT2-2	NA	NA	NA	inter
CUST_11151_PI429285431	6.4134693	P	5.9057274	P	1.42182302186379	0	lncRNA	12709-1_{1..848}	lnc-UQCRFS1-9:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UQCRFS1-9:11	chr19	 28284440	 28285287	-	lnc-UQCRFS1-9	lnc-UQCRFS1-9:11	XLOC_013282	linc-ZNF681-4	NA	NA	NA	inter
CUST_34861_PI429285431	0.9939205	A	1.0716679	A	0.947535959178743	0	lncRNA	36287-1_{1..602}	n341767|AF085834|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4243|NULL|-0.9068850|-0.2623442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341767|AF085834|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4243|NULL|-0.9068850|-0.2623442	chr9	118954207	118954808	+	NA	NA	NA	NA	PAPPA	NA	chr9:118944207-118964799	inner
CUST_39207_PI429285431	5.7354717	P	5.5529594	P	1.13485840081856	0	lncRNA	40182-1_{1..1439}	n385993|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xrv.1||-1.0702800|-0.2236197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385993|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xrv.1||-1.0702800|-0.2236197	chr10	 80928942	 80930380	-	NA	NA	NA	NA	ZMIZ1	NA	chr10:80918942-80940381	inner
CUST_32848_PI429285431	2.69717	A	2.0398457	A	1.57715483316726	0	lncRNA	34482-1_{1..491}	n339510|BC016316|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1951|NULL|-1.0507600|-0.4515793	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339510|BC016316|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1951|NULL|-1.0507600|-0.4515793	chr3	124945218	124945708	-	NA	NA	NA	NA	ZNF148	NA	chr3:124944513-124955675	inner
CUST_1483_PI429285431	0.8972478	A	0.8924041	A	1.00336303936857	0	lncRNA	1470-1_{1..493}	"transcript_id ""ENST00000470739.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000470739.1"" | genecode_v17"	chr3	147561910	147562402	-	ENSG00000239661.1	ENST00000470739.1	RP11-78O22.1	RP11-78O22.1-001	NA	NA	NA	inter
CUST_40040_PI429285431	2.9207544	A	4.0422974	P	0.459602006011671	0	lncRNA	40893-2_{3001..3800}	n407231|NR_026699|lncRNA|Homosapiens||RefGeneNoncode|NR_026699||7.0238500|-0.1693178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407231|NR_026699|lncRNA|Homosapiens||RefGeneNoncode|NR_026699||7.0238500|-0.1693178	chr3	 52324835	 52325634	+	NA	NA	NA	NA	WDR82	NA	chr3:52311835-52312659	inter
CUST_17643_PI429285431	5.1534667	P	4.3066664	P	1.79850765495165	0	lncRNA	19372-1_{1..328}	lnc-MMP16-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MMP16-1:2	chr8	 89610994	 89611321	-	lnc-MMP16-1	lnc-MMP16-1:2	XLOC_007146	linc-MMP16-1	NA	NA	NA	inter
LNCA_21_P0013126	3.117845	P	3.3794649	P	0.834150784616106	0	lncRNA	ENST00000431001	NA	NA	NA	NA	XLOC_l2_012432	NA	ENST00000431001	THC2771124	NA	"BROAD Institute lincRNA (XLOC_l2_012432), lincRNA [TCONS_l2_00025105]"	chr6:23342046-23345210	hs|6p22.3	Agilent_HUMAN_G3V2	ENST00000431001	ENST00000431001	chr6	 23342046	 23345210	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27135_PI429285431	0.917225	A	0.9097712	A	1.00517995024671	0	lncRNA	28671-1_{1..547}	n324251|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324256|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324256|-1.0968200|-0.2220652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324251|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324256|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324256|-1.0968200|-0.2220652	chr7	  6087259	  6087805	+	NA	NA	NA	NA	EIF2AK1	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10chr7:6077259-6098860"	NA	inner
CUST_30004_PI429285431	2.4536753	A	3.020238	A	0.675223630782872	0	lncRNA	31770-1_{1..200}	n334399|S81257|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000217016|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000217016|1.5869800|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334399|S81257|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000217016|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000217016|1.5869800|-1.0000000	chr1	 38511240	 38511439	-	NA	NA	NA	NA	POU3F1	NA	chr1:38509523-38512450	inner
CUST_92_PI429201921	1.3498044	A	1.5773121	A	0.85410911775352	0	lncRNA	95-1_{1..2638}	TC07002630.hg.1	TCONS_l2_00027230-XLOC_l2_013630 // Broad TUCP // linc-MTRNR2L6-5 chr7:+:141940629-141943268 // chr7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr7:+:141940629-141943268	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00027230-XLOC_l2_013630	linc-MTRNR2L6-5	chr7	141940629	141943268	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001727	2.5659635	A	1.5614699	A	2.00623916394062	0	lncRNA	TCONS_00002376	NA	NA	NA	NA	XLOC_000814	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000814), lincRNA [TCONS_00002376]"	chr1:44498269-44498210	hs|1p34.1	Agilent_HUMAN_G3V2	TCONS_00002376	TCONS_00002376	chr1	 44498210	 44498269	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16695_PI429285431	0.9015269	A	0.90918237	A	0.994707686452005	0	lncRNA	18400-1_{1..226}	lnc-GRIP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRIP1-3:1	chr12	 67829415	 67829640	-	lnc-GRIP1-3	lnc-GRIP1-3:1	XLOC_010111	linc-GRIP1-4	NA	NA	NA	inter
LNCA_21_P0010810	4.21339	P	3.8669798	P	1.27139313182298	0	lncRNA	TCONS_l2_00002935	NA	NA	NA	NA	XLOC_l2_001520	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001520), lincRNA [TCONS_l2_00002935]"	chr10:29097097-29097156	hs|10p12.1	Agilent_HUMAN_G3V2	TCONS_l2_00002935	TCONS_l2_00002935	chr10	 29097097	 29097156	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16420_PI429285431	3.1993647	P	2.7515805	A	1.36394379932198	0	lncRNA	18119-1_{1..261}	lnc-ZFP90-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP90-1:1	chr16	 68609694	 68609954	+	lnc-ZFP90-1	lnc-ZFP90-1:1	XLOC_011765	linc-CDH3-4	ZFP90	NA	chr16:68599694-68601039	inter
CUST_28049_PI429285431	1.8038065	A	1.7120317	A	1.06568037384635	0	lncRNA	29665-1_{1..591}	n325313|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323596|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323596|-0.2143690|-0.2704184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325313|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323596|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323596|-0.2143690|-0.2704184	chr2	 47307559	 47308149	+	NA	NA	NA	NA	TTC7A	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30chr2:47297559-47303275"	NA	inner
CUST_18295_PI429285431	8.426495	P	8.809234	P	0.766980072735645	0	lncRNA	20025-1_{1..781}	lnc-FAM27E1.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM27E1.1-5:1	chr9	 46687554	 46688334	-	lnc-FAM27E1.1-5	lnc-FAM27E1.1-5:1	ENSG00000204802	RP11-111F5.4	NA	NA	NA	inter
LNCA_21_P0005992	0.91592664	A	0.9241126	A	0.994341992066788	0	lncRNA	BC039487	NA	BC039487	NA	Hs.407538	XLOC_007500	NA	NA	THC2612610	NA	"BROAD Institute lincRNA (XLOC_007500), lincRNA [TCONS_00015582]"	chr9:109173237-109173296	hs|9q31.2	Agilent_HUMAN_G3V2	BC039487	BC039487	chr9	109173237	109173296	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39657_PI429285431	5.536439	P	6.164575	P	0.647011831844438	0	lncRNA	40596-1_{1..2783}	n405264|NR_001284_2|lncRNA|Homosapiens||RefGeneNoncode|NR_001284_2||-0.8687140|-0.2289279	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405264|NR_001284_2|lncRNA|Homosapiens||RefGeneNoncode|NR_001284_2||-0.8687140|-0.2289279	chr6	  3261779	  3264561	-	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PSMG4:range=chr6:3259257-32679465'pad=0,hg19_refFlat_PSMG4:range=chr6:3259257-32679465'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40chr6:3269207-3276383"	NA	inner
LNCA_33_P3423626	0.9178339	A	0.9247571	A	0.995212699267697	0	lncRNA	ENST00000375987	XR_112384	XR_112384	NA	Hs.531687	NA	NA	ENST00000375987	THC2624432	NA	"PREDICTED: Homo sapiens hypothetical LOC151121 (LOC151121), miscRNA [XR_112384]"	chr2:129999842-129999783	hs|2q21.1	Agilent_HUMAN_G3V2	ENST00000375987	ENST00000375987	chr2	129999783	129999842	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29088_PI429285431	1.2257605	A	0.91753453	A	1.23818421302323	0	lncRNA	30819-1_{1..823}	n326581|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025342|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025342|-0.7499020|-0.3530309	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326581|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025342|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025342|-0.7499020|-0.3530309	chr1	 63377508	 63378330	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34826_PI429285431	1.1531582	A	2.4880455	A	0.39642303474626	0	lncRNA	36257-1_{1..2464}	n341732|BC064972|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4205|NULL|-0.9303160|-0.2494102	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341732|BC064972|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4205|NULL|-0.9303160|-0.2494102	chr9	 98855307	 98857770	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38368_PI429285431	1.0576085	A	1.775633	A	0.607929317583822	0	lncRNA	39410-1_{1..849}	n382176|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001xji.1||-1.0841500|-0.4000981	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382176|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001xji.1||-1.0841500|-0.4000981	chr14	 67913800	 67914648	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41195_PI429285431	1.3355954	A	0.90609294	A	1.34676903861955	0	lncRNA	42060-1_{1..65}	ENST00000390198 ncrna:miRNA chromosome:GRCh37:19:54230176:54230240:1 gene:ENSG00000211532 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390198 ncrna:miRNA chromosome:GRCh37:19:54230176:54230240:1 gene:ENSG00000211532 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54230176	 54230240	+	ENSG00000211532	ENST00000390198	NA	NA	NA	NA	NA	inter
CUST_3812_PI429285431	0.9151333	A	0.91232353	A	1.00194948192736	0	lncRNA	3780-1_{1..244}	"transcript_id ""ENST00000445647.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445647.1"" | genecode_v17"	chr10	119494824	119495067	+	ENSG00000234952.1	ENST00000445647.1	RP11-328K15.1	RP11-328K15.1-001	NA	NA	NA	inter
CUST_6176_PI429285431	0.9185858	A	1.3304839	A	0.751633826331138	0	lncRNA	6100-1_{1..352}	"transcript_id ""ENST00000587659.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587659.1"" | genecode_v17"	chr18	 46489321	 46489672	-	ENSG00000266905.1	ENST00000587659.1	RP11-1058N17.1	RP11-1058N17.1-001	NA	NA	NA	inter
CUST_47035_PI429285431	2.5173903	A	2.4412577	A	1.05418831067324	0	lncRNA	51125-1_{1..3000}	"gi|223029389|ref|NR_026692.1| Homo sapiens CD209 molecule (CD209), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223029389|ref|NR_026692.1| Homo sapiens CD209 molecule (CD209), transcript variant 2, non-coding RNA"	Chr19	  7804879	  7807878	-	30835	NR_026692.1	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZRSR2:range=chrX:15808619-158413655'pad=0,hg19_refFlat_ZRSR2:range=chrX:15808619-158413655'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60"	NA	inter
CUST_42721_PI429285431	1.463053	A	0.91432685	A	1.46279352928768	0	lncRNA	45659-1_{1..81}	ENST00000363931 ncrna:snoRNA chromosome:GRCh37:15:25467495:25467575:1 gene:ENSG00000200801 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363931 ncrna:snoRNA chromosome:GRCh37:15:25467495:25467575:1 gene:ENSG00000200801 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 25467495	 25467575	+	ENSG00000200801	ENST00000363931	NA	NA	SNRPN	NA	chr15:25457495-25477575	inter
CUST_9388_PI429285431	3.5914066	P	3.6309903	P	0.972935654470599	0	lncRNA	10892-1_{1..1803}	lnc-CBLB-7:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLB-7:6	chr3	106959290	106961092	-	lnc-CBLB-7	lnc-CBLB-7:6	XLOC_003204	linc-CBLB-6	NA	NA	NA	inter
CUST_27203_PI429285431	9.250929	P	9.636477	P	0.765488176724777	0	lncRNA	28745-1_{1..244}	n324335|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042755|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042755|-1.3098200|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324335|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042755|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042755|-1.3098200|-1.0000000	chr6	153167580	153167823	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42592_PI429285431	6.5108247	P	6.6630144	P	0.899883596301634	0	lncRNA	45440-1_{1..90}	ENST00000583588 proj_ncrna:snoRNA chromosome:GRCh37:HG871_PATCH:5238076:5238165:-1 gene:ENSG00000265431 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583588 proj_ncrna:snoRNA chromosome:GRCh37:HG871_PATCH:5238076:5238165:-1 gene:ENSG00000265431 gene_biotype:snoRNA transcript_biotype:snoRNA	chrHG871_PATCH	  5238076	  5238165	-	ENSG00000265431	ENST00000583588	NA	NA	NA	NA	NA	Unknown
CUST_14074_PI429285431	0.91703737	A	0.90821564	A	1.00613349056915	0	lncRNA	15719-1_{1..320}	lnc-EPHA7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPHA7-2:1	chr6	 93299496	 93299815	-	lnc-EPHA7-2	lnc-EPHA7-2:1	XLOC_005783	linc-MAP3K7-2	NA	NA	NA	inter
CUST_40048_PI429285431	7.0529404	P	7.17037	P	0.921828578585708	0	lncRNA	40901-1_{1..1805}	n407252|NR_026717_2|lncRNA|Homosapiens||RefGeneNoncode|NR_026717_2||-0.8149020|-0.1883855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407252|NR_026717_2|lncRNA|Homosapiens||RefGeneNoncode|NR_026717_2||-0.8149020|-0.1883855	chr6	  3224534	  3226338	+	NA	NA	NA	NA	TUBB2B	"hg19_refFlat_TUBB:range=chr6_dbb_hap3:1981942-19858325'pad=0,hg19_refFlat_TUBB:range=chr6_dbb_hap3:1981942-19858325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TUBB4B:range=chr9:140135813-1401380085'pad=0,hg19_refFlat_TUBB4B:range=chr9:140135813-1401380085'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_TUBB3:range=chr16:89999926-900022125'pad=0,hg19_refFlat_TUBB3:range=chr16:89999926-900022125'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.60;hg19_refFlat_TUBB4A:range=chr19:6495175-65022235'pad=0,hg19_refFlat_TUBB4A:range=chr19:6495175-65022235'pad=0 3'pad=0 strand=- repeatMasking=none,-99.80;hg19_refFlat_TUBB:range=chr6_cox_hap2:2200352-22042425'pad=0,hg19_refFlat_TUBB:range=chr6_cox_hap2:2200352-22042425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TUBB:range=chr6:30688284-306921745'pad=0,hg19_refFlat_TUBB:range=chr6:30688284-306921745'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TUBB:range=chr6_ssto_hap7:2020591-20244815'pad=0,hg19_refFlat_TUBB:range=chr6_ssto_hap7:2020591-20244815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TUBB3:range=chr16:89989810-900022125'pad=0,hg19_refFlat_TUBB3:range=chr16:89989810-900022125'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.60;hg19_refFlat_TUBB:range=chr6_mann_hap4:2036378-20402685'pad=0,hg19_refFlat_TUBB:range=chr6_mann_hap4:2036378-20402685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TUBB:range=chr6_apd_hap1:1999926-20038165'pad=0,hg19_refFlat_TUBB:range=chr6_apd_hap1:1999926-20038165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TUBB1:range=chr20:57594578-575998385'pad=0,hg19_refFlat_TUBB1:range=chr20:57594578-575998385'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TUBB:range=chr6_qbl_hap6:1981215-19851055'pad=0,hg19_refFlat_TUBB:range=chr6_qbl_hap6:1981215-19851055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TUBB6:range=chr18:12308292-123261295'pad=0,hg19_refFlat_TUBB6:range=chr18:12308292-123261295'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_TUBB:range=chr6_mcf_hap5:2070167-20740575'pad=0,hg19_refFlat_TUBB:range=chr6_mcf_hap5:2070167-20740575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TUBB2B:range=chr6:3224985-32277775'pad=0,hg19_refFlat_TUBB2B:range=chr6:3224985-32277775'pad=0 3'pad=0 strand=- repeatMasking=none,-103.80;hg19_refFlat_TUBB2A:range=chr6:3154097-31576975'pad=0,hg19_refFlat_TUBB2A:range=chr6:3154097-31576975'pad=0 3'pad=0 strand=- repeatMasking=none,-103.80chr6:3224495-3227968"	NA	inner
CUST_12154_PI429285431	0.89526135	A	0.8971397	A	0.998698874192534	0	lncRNA	13754-1_{1..534}	lnc-BMPER-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BMPER-1:1	chr7	 33916664	 33917197	+	lnc-BMPER-1	lnc-BMPER-1:1	XLOC_006039	linc-BMPER	NA	NA	NA	inter
CUST_35758_PI429285431	0.89487916	A	0.8972904	A	0.998330051710282	0	lncRNA	37178-2_{3001..3786}	n342943|NR024582|mRNAlikelncRNA|Homosapiens|Jpx|lncRNAdb|342943|http://lncrnadb.com/Detail.aspx?TKeyID=241|-1.5327800|-0.2839675	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342943|NR024582|mRNAlikelncRNA|Homosapiens|Jpx|lncRNAdb|342943|http://lncrnadb.com/Detail.aspx?TKeyID=241|-1.5327800|-0.2839675	chr18	 37316713	 37317498	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17736_PI429285431	0.9008169	A	0.92256033	A	0.985041607879463	0	lncRNA	19468-1_{1..3000}	lnc-IMPAD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IMPAD1-1:1	chr8	 58127740	 58130739	-	lnc-IMPAD1-1	lnc-IMPAD1-1:1	XLOC_007089	linc-IMPAD1-1	NA	NA	NA	inter
LNCA_21_P0014886	2.4459136	A	1.623035	A	1.76893201218934	0	lncRNA	XR_132804	XR_132804	XR_132804	NA	NA	LOC100652837	uncharacterized LOC100652837	ENST00000373604	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652837, transcript variant 2 (LOC100652837), miscRNA [XR_132804]"	chr1:32670466-32670407	hs|1p35.1	Agilent_HUMAN_G3V2	XR_132804	XR_132804	chr1	 32670407	 32670466	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13765_PI429285431	0.92484677	A	0.9235306	A	1.00091271579643	0	lncRNA	15408-1_{1..624}	lnc-HSPH1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HSPH1-1:3	chr13	 31627363	 31627986	-	lnc-HSPH1-1	lnc-HSPH1-1:3	XLOC_010561	linc-HMGB1-2	NA	NA	NA	inter
CUST_23785_PI429285431	0.9262056	A	0.9433811	A	0.988165436501829	0	lncRNA	25350-1_{1..639}	lnc-LRRK1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRK1-4:1	chr15	101877232	101877870	+	lnc-LRRK1-4	lnc-LRRK1-4:1	ENSG00000259764.1	RP11-299G20.3	PCSK6	"hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr15:101867232-101887633"	NA	inner
CUST_31921_PI429285431	2.9527924	A	2.9648762	A	0.991659127817305	0	lncRNA	33649-1_{1..1073}	n338475|BC039687|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|872|NULL|-1.0079500|-0.1532662	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n338475|BC039687|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|872|NULL|-1.0079500|-0.1532662	chr14	100070892	100071964	+	NA	NA	NA	NA	CCDC85C	NA	chr14:100060892-100070727	inter
CUST_3359_PI429285431	0.9112253	A	0.91232777	A	0.999236117934417	0	lncRNA	3334-1_{1..499}	"transcript_id ""ENST00000437881.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000437881.1"" | genecode_v17"	chr9	  6047360	  6047858	+	ENSG00000228739.1	ENST00000437881.1	RP11-218I7.2	RP11-218I7.2-001	NA	NA	NA	inter
CUST_51740_PI429285431	0.8948729	A	0.89467704	A	1.00013576902256	0	lncRNA	55293-1_{1..360}	hg19_lincRNAsTranscripts_TCONS_l2_00011858 range=chr18:56734223-56735708 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011858 range=chr18:56734223-56735708 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr18	 56734223	 56734582	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51310_PI429285431	1.0657666	A	1.1587065	A	0.937610154743853	0	lncRNA	54915-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00009502 range=chr15:40982875-40987303 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009502 range=chr15:40982875-40987303 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 40982875	 40985874	-	NA	NA	NA	NA	RAD51	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90chr15:40987327-40997303"	NA	inter
CUST_15507_PI429285431	1.3987288	A	0.8952646	A	1.41761345290948	0	lncRNA	17196-1_{1..580}	lnc-RSBN1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RSBN1L-1:1	chr7	 77300567	 77301146	+	lnc-RSBN1L-1	lnc-RSBN1L-1:1	XLOC_006153	linc-RSBN1L	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00"	NA	inter
CUST_22551_PI429285431	4.3379145	P	4.5626936	P	0.855726041182142	0	lncRNA	24138-1_{1..579}	lnc-MFNG-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MFNG-2:5	chr22	 37816323	 37816901	-	lnc-MFNG-2	lnc-MFNG-2:5	ENSG00000243902.1	RP1-63G5.5	ELFN2	NA	chr22:37806323-37823505	inner
CUST_23223_PI429285431	2.3999674	A	3.375503	P	0.508551011626301	0	lncRNA	24795-1_{1..423}	lnc-AMIGO3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AMIGO3-1:1	chr3	 49722171	 49722593	-	lnc-AMIGO3-1	lnc-AMIGO3-1:1	ENSG00000259970.1	AC099668.5	MST1	NA	chr3:49721380-49726196	inner
CUST_15303_PI429285431	1.4362009	A	1.5152576	A	0.946676424754014	0	lncRNA	16981-1_{1..741}	lnc-FOXD4L3-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXD4L3-2:3	chr9	 70943805	 70944545	+	lnc-FOXD4L3-2	lnc-FOXD4L3-2:3	XLOC_007390	linc-PGM5-1	NA	NA	NA	inter
CUST_30180_PI429285431	0.9204211	A	1.6536582	A	0.601552642588277	0	lncRNA	31954-1_{1..661}	n334878|AJ427353|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247917|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247917|2.0825500|-0.1709359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334878|AJ427353|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247917|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247917|2.0825500|-0.1709359	chr6	 24495429	 24496089	+	NA	NA	NA	NA	ALDH5A1	NA	chr6:24495197-24525538	inner
CUST_11925_PI429285431	4.631907	P	4.4633574	P	1.12392798600063	0	lncRNA	13506-1_{1..1136}	lnc-TPM4-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPM4-2:11	chr19	 16137830	 16138965	+	lnc-TPM4-2	lnc-TPM4-2:11	XLOC_012983	linc-TPM4-2	NA	NA	NA	inter
CUST_23096_PI429285431	3.1160626	P	3.1420631	P	0.982139254879805	0	lncRNA	24668-1_{1..3000}	lnc-LEMD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-LEMD3-1:1	chr12	 65677450	 65680449	+	lnc-LEMD3-1	lnc-LEMD3-1:1	ENSG00000250280.2	RP11-305O6.3	MSRB3	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80chr12:65672423-65690508"	NA	inner
CUST_49703_PI429285431	2.6019263	A	3.0487924	A	0.733634759332165	0	lncRNA	53480-1_{1..232}	hg19_lincRNAsTranscripts_TCONS_l2_00026403 range=chr7:17503053-17506850 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026403 range=chr7:17503053-17506850 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 17503053	 17503284	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51977_PI429285431	0.9088756	A	1.2784064	A	0.774034190844733	0	lncRNA	55516-2_{3001..4739}	hg19_lincRNAsTranscripts_TCONS_l2_00016361 range=chr20:58658507-58676396 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016361 range=chr20:58658507-58676396 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 58661507	 58663245	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32154_PI429285431	1.4073007	A	2.9245338	A	0.349355292156839	0	lncRNA	33854-1_{1..1299}	n338721|CR622406|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1141|NULL|-0.4268200|-0.0686690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338721|CR622406|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1141|NULL|-0.4268200|-0.0686690	chr19	 46271644	 46272942	+	NA	NA	NA	NA	SIX5	"hg19_refFlat_SIX5:range=chr19:46268759-462721025'pad=0,hg19_refFlat_SIX5:range=chr19:46268759-462721025'pad=0 3'pad=0 strand=- repeatMasking=none,-113.80chr19:46268043-46272497"	NA	inner
CUST_31673_PI429285431	2.3263364	A	1.8708189	A	1.37127459799576	0	lncRNA	33421-1_{1..2413}	n338197|AK094442|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|589|NULL|1.0312000|-0.2047432	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338197|AK094442|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|589|NULL|1.0312000|-0.2047432	chr22	 51049989	 51052401	+	NA	NA	NA	NA	ARSA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-55.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30chr22:51061182-51062402"	NA	inter
CUST_46031_PI429285431	4.8138885	P	4.9606504	P	0.903275572955403	0	lncRNA	50312-1_{1..3000}	"gi|288541338|ref|NR_033267.1| Homo sapiens FGFR1 oncogene partner 2 pseudogene (LOC100335030), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|288541338|ref|NR_033267.1| Homo sapiens FGFR1 oncogene partner 2 pseudogene (LOC100335030), non-coding RNA"	Chr12	 49782957	 49785956	+	100335030	NR_033267.1	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20"	NA	inter
CUST_47157_PI429285431	6.796395	P	6.399013	P	1.3171156246951	0	lncRNA	51236-1_{1..3000}	"gi|239049633|ref|NR_027763.1| Homo sapiens glycogen synthase 1 (muscle) (GYS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239049633|ref|NR_027763.1| Homo sapiens glycogen synthase 1 (muscle) (GYS1), transcript variant 3, non-coding RNA"	Chr19	 49471382	 49474381	-	2997	NR_027763.1	NA	NA	NA	NA	NA	inter
CUST_943_PI429285431	0.90601057	A	1.0345054	A	0.914785352067504	0	lncRNA	933-1_{1..635}	"transcript_id ""ENST00000443419.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443419.1"" | genecode_v17"	chr2	 78143060	 78143694	+	ENSG00000233605.1	ENST00000443419.1	AC073628.1	AC073628.1-001	NA	NA	NA	inter
CUST_38069_PI429285431	10.7037735	P	9.856133	P	1.79955537896469	0	lncRNA	39146-2_{3001..3841}	n381039|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001aia.1||1.1647500|-0.2131817	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381039|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001aia.1||1.1647500|-0.2131817	chr1	  1661824	  1662664	-	NA	NA	NA	NA	NADK	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00chr1:1667250-1672665"	NA	inner
CUST_50850_PI429285431	3.338653	P	3.5153449	P	0.884729356761719	0	lncRNA	54494-2_{3001..3359}	hg19_lincRNAsTranscripts_TCONS_l2_00005134 range=chr11:78133641-78139043 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005134 range=chr11:78133641-78139043 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	 78136641	 78136999	-	NA	NA	NA	NA	NARS2	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60chr11:78147016-78149043"	NA	inter
CUST_15287_PI429285431	1.0252604	A	1.0555631	A	0.979214821435852	0	lncRNA	16964-1_{1..427}	lnc-ZFP42-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP42-4:1	chr4	188351216	188351642	+	lnc-ZFP42-4	lnc-ZFP42-4:1	XLOC_003828	linc-ZFP42-4	NA	NA	NA	inter
CUST_28707_PI429285431	2.098716	A	3.1818194	P	0.472012378566074	0	lncRNA	30407-1_{1..446}	n326097|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046506|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046506|-0.8109800|-0.3126988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326097|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046506|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046506|-0.8109800|-0.3126988	chr10	  4275141	  4275586	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43027_PI429285431	10.31469	P	10.573012	P	0.83605977607078	0	lncRNA	46428-1_{1..134}	ENST00000387069 ncrna:snRNA chromosome:GRCh37:1:28975112:28975245:1 gene:ENSG00000209804 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"gencode_v17,ensembl.GRCh37.72,"	>ENST00000387069 ncrna:snRNA chromosome:GRCh37:1:28975112:28975245:1 gene:ENSG00000209804 gene_biotype:snRNA transcript_biotype:snRNA	chr1	 28975112	 28975245	+	ENSG00000209804	ENST00000387069	NA	NA	TAF12	NA	chr1:28965112-28969604	inter
CUST_10603_PI429285431	0.8816553	A	0.8950197	A	0.990779277820037	0	lncRNA	12131-1_{1..272}	lnc-SPTBN1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPTBN1-4:1	chr2	 54951686	 54951957	+	lnc-SPTBN1-4	lnc-SPTBN1-4:1	XLOC_001478	linc-EML6-1	EML6	NA	chr2:54952149-54961863	inter
CUST_40045_PI429285431	14.002888	P	14.19097	P	0.877771905331691	0	lncRNA	40898-1_{1..653}	n407249|NR_026715|lncRNA|Homosapiens||RefGeneNoncode|NR_026715||5.2844100|-0.0951966	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407249|NR_026715|lncRNA|Homosapiens||RefGeneNoncode|NR_026715||5.2844100|-0.0951966	chr10	112696360	112697012	-	NA	NA	NA	NA	NA	NA	NA	inner
CUST_43066_PI429285431	4.6996675	P	4.9881606	P	0.818756806425321	0	lncRNA	46971-1_{1..126}	ENST00000408119 ncrna:snRNA chromosome:GRCh37:20:44407337:44407462:1 gene:ENSG00000221046 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408119 ncrna:snRNA chromosome:GRCh37:20:44407337:44407462:1 gene:ENSG00000221046 gene_biotype:snRNA transcript_biotype:snRNA	chr20	 44407337	 44407462	+	ENSG00000221046	ENST00000408119	NA	NA	WFDC3	NA	chr20:44402847-44417462	inner
CUST_33161_PI429285431	3.7013617	P	1.739146	A	3.89659961842862	0	lncRNA	34755-2_{3001..3709}	n339852|AL832945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2300|NULL|-1.1700800|-0.3063970	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339852|AL832945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2300|NULL|-1.1700800|-0.3063970	chr18	 42647795	 42648503	+	NA	NA	NA	NA	SETBP1	NA	chr18:42634795-42648475	inner
CUST_45940_PI429285431	1.0814842	A	2.7902172	A	0.305928623345354	0	lncRNA	50242-1_{1..1447}	"gi|397139429|ref|XR_132807.2| PREDICTED: Homo sapiens uncharacterized LOC100507431 (LOC100507431), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139429|ref|XR_132807.2| PREDICTED: Homo sapiens uncharacterized LOC100507431 (LOC100507431), misc_RNA"	Chr11	130714088	130715534	-	100507431	XR_132807.3	NA	NA	NA	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-26.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10"	NA	inter
CUST_21727_PI429285431	6.0906267	P	6.268632	P	0.883924283802693	0	lncRNA	23337-1_{1..565}	lnc-ANAPC11-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANAPC11-2:2	chr17	 79826085	 79826649	+	lnc-ANAPC11-2	lnc-ANAPC11-2:2	ENSG00000262413.1	RP11-498C9.3	P4HB	NA	chr17:79816085-79818544	inner
CUST_33728_PI429285431	0.88368964	A	0.8837162	A	0.999981590180347	0	lncRNA	35286-1_{1..2169}	n340505|AK094995|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2967|NULL|-1.1167400|-0.2707485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340505|AK094995|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2967|NULL|-1.1167400|-0.2707485	chr5	 75627661	 75629829	+	NA	NA	NA	NA	SV2C	NA	chr5:75617661-75621416	inter
CUST_23724_PI429285431	0.90222394	A	1.7607585	A	0.551512480923361	0	lncRNA	25288-1_{1..427}	lnc-KLHDC10-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHDC10-1:2	chr7	129781995	129782421	+	lnc-KLHDC10-1	lnc-KLHDC10-1:2	ENSG00000229196.3	RP11-775D22.2	KLHDC10	NA	chr7:129771995-129775560	inter
CUST_4616_PI429285431	6.655758	P	6.1823196	P	1.38841456039836	0	lncRNA	4562-1_{1..315}	"transcript_id ""ENST00000437748.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437748.2"" | genecode_v17"	chr13	 45556212	 45556526	-	ENSG00000223732.2	ENST00000437748.2	RP11-321C24.1	RP11-321C24.1-001	NUFIP1	NA	chr13:45546212-45563613	inner
CUST_28666_PI429285431	0.9116541	A	1.7860892	A	0.54546740710945	0	lncRNA	30358-1_{1..441}	n326045|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047252|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047252|-1.1365300|-0.1967077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326045|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047252|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047252|-1.1365300|-0.1967077	chr10	 25980709	 25981149	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40412_PI429285431	10.533062	P	10.693245	P	0.894911547836983	0	lncRNA	41197-1_{1..2270}	n409278|NR_033488_5|lncRNA|Homosapiens||RefGeneNoncode|NR_033488_5||-1.1726900|-0.3675923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409278|NR_033488_5|lncRNA|Homosapiens||RefGeneNoncode|NR_033488_5||-1.1726900|-0.3675923	chr6	  3034405	  3036674	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90"	NA	inter
CUST_31234_PI429285431	1.439978	A	0.8920233	A	1.46201154114955	0	lncRNA	33024-1_{1..3000}	n337683|AK094982|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|65|NULL|-0.9053560|-0.2360232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337683|AK094982|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|65|NULL|-0.9053560|-0.2360232	chr15	 31767606	 31770605	-	NA	NA	NA	NA	OTUD7A	NA	chr15:31775329-31780705	inter
CUST_794_PI429285431	0.9069211	A	0.89318347	A	1.0095676798869	0	lncRNA	787-1_{1..686}	"transcript_id ""ENST00000441870.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441870.1"" | genecode_v17"	chr2	 20699331	 20700016	-	ENSG00000227047.1	ENST00000441870.1	AC012065.4	AC012065.4-001	NA	NA	NA	inter
LNCA_21_P0004878	0.9059223	A	0.8971622	A	1.00609051081194	0	lncRNA	TCONS_00011803	NA	NA	NA	NA	XLOC_005278	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005278), lincRNA [TCONS_00011803]"	chr6:37508562-37508621	hs|6p21.2	Agilent_HUMAN_G3V2	TCONS_00011803	TCONS_00011803	chr6	 37508562	 37508621	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29326_PI429285431	5.086231	P	5.2599177	P	0.886574209416446	0	lncRNA	31077-1_{1..369}	n332541|BC141941|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000435269|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000435269|-1.1882200|-0.1467619	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332541|BC141941|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000435269|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000435269|-1.1882200|-0.1467619	chr19	 14282473	 14282841	+	NA	NA	NA	NA	LPHN1	NA	chr19:14272473-14292842	inner
CUST_46858_PI429285431	0.9031313	A	1.0260987	A	0.918296912452736	0	lncRNA	50989-1_{1..855}	"gi|217035089|ref|NR_024559.1| Homo sapiens MAPT antisense RNA 1 (MAPT-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|217035089|ref|NR_024559.1| Homo sapiens MAPT antisense RNA 1 (MAPT-AS1), non-coding RNA"	Chr17	 43920722	 43921576	-	100128977	NR_024559.1	NA	NA	NA	NA	NA	inter
CUST_29150_PI429285431	1.7181596	A	2.2142513	A	0.709024949649714	0	lncRNA	30893-1_{1..551}	n326660|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000010419|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000010419|-1.0757200|-0.1753044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326660|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000010419|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000010419|-1.0757200|-0.1753044	chr1	 30385696	 30386246	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20428_PI429285431	4.188205	P	4.332499	P	0.904822054686009	0	lncRNA	22072-1_{1..774}	lnc-CCDC28A-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC28A-1:4	chr6	139018040	139018813	+	lnc-CCDC28A-1	lnc-CCDC28A-1:4	ENSG00000225177.1	RP11-390P2.4	NA	NA	NA	inter
CUST_20835_PI429285431	7.4318504	P	7.8021464	P	0.773623754890235	0	lncRNA	22466-1_{1..491}	lnc-DEXI-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DEXI-1:2	chr16	 10982172	 10982662	-	lnc-DEXI-1	lnc-DEXI-1:2	ENSG00000262151.1	RP11-876N24.2	CIITA	"hg19_refFlat_CIITA:range=chr16:10971188-110171605'pad=0,hg19_refFlat_CIITA:range=chr16:10971188-110171605'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40chr16:10972172-10992495"	NA	inner
CUST_39522_PI429285431	4.9874263	P	5.176286	P	0.87729886062614	0	lncRNA	40468-1_{1..679}	n387339|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011cns.1||1.3058800|-0.3601318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387339|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011cns.1||1.3058800|-0.3601318	chr5	 22142460	 22143138	+	NA	NA	NA	NA	CDH12	NA	chr5:22132460-22162370	inner
LNCA_21_P0012588	0.91152567	A	1.626671	A	0.609143766600923	0	lncRNA	TCONS_l2_00020559	NA	NA	NA	NA	XLOC_l2_010701	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010701), lincRNA [TCONS_l2_00020559]"	chr4:69651845-69651904	hs|4q13.2	Agilent_HUMAN_G3V2	TCONS_l2_00020559	TCONS_l2_00020559	chr4	 69651845	 69651904	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18126_PI429285431	0.97741675	A	1.6990987	A	0.606390076800279	0	lncRNA	19861-1_{1..1374}	lnc-CSTB-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CSTB-1:4	chr21	 45230467	 45231840	-	lnc-CSTB-1	lnc-CSTB-1:4	XLOC_014107	linc-CSTB-3	RRP1	NA	chr21:45220467-45223983	inter
CUST_47161_PI429285431	12.9025545	P	12.980846	P	0.947178671536819	0	lncRNA	51239-1_{1..1568}	"gi|359338976|ref|NR_033397.4| Homo sapiens protein arginine methyltransferase 1 (PRMT1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|359338976|ref|NR_033397.4| Homo sapiens protein arginine methyltransferase 1 (PRMT1), transcript variant 2, non-coding RNA"	Chr19	 50180409	 50181976	+	3276	NR_033397.4	NA	NA	NA	NA	NA	inter
CUST_4763_PI429285431	4.227962	P	4.2587404	P	0.978891998046574	0	lncRNA	4708-1_{1..540}	"transcript_id ""ENST00000552028.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000552028.1"" | genecode_v17"	chr14	 29445042	 29445581	-	ENSG00000257523.1	ENST00000552028.1	CTD-2384A14.2	CTD-2384A14.2-001	NA	NA	NA	inter
CUST_45701_PI429285431	6.298147	P	6.6395464	P	0.789275351108596	0	lncRNA	50070-2_{3001..4918}	"gi|141801873|ref|NR_002934.2| Homo sapiens scavenger receptor protein family member (LOC619207), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|141801873|ref|NR_002934.2| Homo sapiens scavenger receptor protein family member (LOC619207), non-coding RNA"	NA	NA	NA	NA	NA	NR_002934.2	NA	NA	NA	NA	NA	Unknown
CUST_41473_PI429285431	5.786539	P	6.02724	P	0.846333981995279	0	lncRNA	42670-1_{1..96}	ENST00000384874 ncrna:miRNA chromosome:GRCh37:1:151518272:151518367:1 gene:ENSG00000207606 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384874 ncrna:miRNA chromosome:GRCh37:1:151518272:151518367:1 gene:ENSG00000207606 gene_biotype:miRNA transcript_biotype:miRNA	chr1	151518272	151518367	+	ENSG00000207606	ENST00000384874	NA	NA	TUFT1	NA	chr1:151512781-151528367	inner
CUST_42183_PI429285431	6.2405643	P	6.06586	P	1.12873303188574	0	lncRNA	44241-1_{1..96}	ENST00000577394 ncrna:miRNA chromosome:GRCh37:5:133561448:133561543:1 gene:ENSG00000266751 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577394 ncrna:miRNA chromosome:GRCh37:5:133561448:133561543:1 gene:ENSG00000266751 gene_biotype:miRNA transcript_biotype:miRNA	chr5	133561448	133561543	+	ENSG00000266751	ENST00000577394	NA	NA	PPP2CA	"hg19_refFlat_PPP2CB:range=chr8:30643751-306699375'pad=0,hg19_refFlat_PPP2CB:range=chr8:30643751-306699375'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PPP2CA:range=chr5:133533463-1335615525'pad=0,hg19_refFlat_PPP2CA:range=chr5:133533463-1335615525'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70chr5:133551448-133561950"	NA	inner
CUST_9967_PI429285431	1.0276284	A	1.3990494	A	0.77302072552402	0	lncRNA	11491-1_{1..581}	lnc-NKIRAS1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NKIRAS1-3:2	chr3	 23244112	 23244692	-	lnc-NKIRAS1-3	lnc-NKIRAS1-3:2	XLOC_003065	linc-ZNF385D-1	UBE2E2	NA	chr3:23244784-23254249	inter
CUST_35104_PI429285431	3.1920493	P	3.222252	P	0.979282697787504	0	lncRNA	36511-1_{1..588}	n342074|BC038196|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4555|NULL|-1.0356000|-0.2906386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n342074|BC038196|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4555|NULL|-1.0356000|-0.2906386	chr6	 82523002	 82523589	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_136_PI429201921	1.3281041	A	0.89230895	A	1.35265615214369	0	lncRNA	123-2_{3001..3641}	TC0Y000236.hg.1	TCONS_00017570-XLOC_008280 // Rinn lincRNAs // linc-TBL1Y-2 chrY:+:6311474-6315116 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:+:6311474-6315116	NA	Affy_HUMAN_HTA2.0	TCONS_00017570-XLOC_008280	linc-TBL1Y-2	chrY	  6311474	  6315116	+	NA	NA	NA	NA	VWA1	NA	chr1:1370903-1378262	Unknown
CUST_21749_PI429285431	1.108846	A	0.90570384	A	1.15120292274606	0	lncRNA	23359-1_{1..2088}	lnc-DSCAM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-DSCAM-1:1	chr21	 42519889	 42521976	-	lnc-DSCAM-1	lnc-DSCAM-1:1	ENSG00000226496.1	LINC00323	NA	NA	NA	inter
CUST_37548_PI429285431	7.776108	P	8.172609	P	0.759698564345946	0	lncRNA	38652-1_{1..657}	n346024|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1574|NULL|-1.3650300|-0.1689391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346024|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1574|NULL|-1.3650300|-0.1689391	chr14	105559107	105559763	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18542_PI429285431	1.5934952	A	1.022654	A	1.48538941221704	0	lncRNA	20254-1_{1..545}	lnc-MSR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-MSR1-1:1	chr8	 16772427	 16772971	-	lnc-MSR1-1	lnc-MSR1-1:1	ENSG00000253496	RP11-13N12.1	NA	NA	NA	inter
CUST_32100_PI429285431	5.956411	P	6.2022977	P	0.843297334804613	0	lncRNA	33804-1_{1..2311}	n338663|AK091299|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1077|NULL|0.7194960|-0.1603770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338663|AK091299|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1077|NULL|0.7194960|-0.1603770	chr2	 10196971	 10199281	-	NA	NA	NA	NA	CYS1	NA	chr2:10196926-10220538	inner
CUST_48449_PI429285431	1.0212175	A	0.8922434	A	1.09351582595245	0	lncRNA	52304-1_{1..368}	hg19_lincRNAsTranscripts_TCONS_l2_00001737 range=chr1:208844668-208849106 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001737 range=chr1:208844668-208849106 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	208844668	208845035	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42073_PI429285431	3.372779	P	3.5858047	P	0.862725975906569	0	lncRNA	43989-1_{1..78}	ENST00000579398 ncrna:miRNA chromosome:GRCh37:8:27743556:27743633:-1 gene:ENSG00000265847 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579398 ncrna:miRNA chromosome:GRCh37:8:27743556:27743633:-1 gene:ENSG00000265847 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 27743556	 27743633	-	ENSG00000265847	ENST00000579398	NA	NA	SCARA5	NA	chr8:27733556-27753633	inner
CUST_19835_PI429285431	3.5962222	P	3.35707	P	1.18029885475762	0	lncRNA	21492-1_{1..486}	lnc-C3orf37-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C3orf37-1:2	chr3	129043024	129043509	+	lnc-C3orf37-1	lnc-C3orf37-1:2	ENSG00000206417.4	H1FX-AS1	H1FX	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_H1FX:range=chr3:129034104-1290347455'pad=0,hg19_refFlat_H1FX:range=chr3:129034104-1290347455'pad=0 3'pad=0 strand=- repeatMasking=none,-96.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60chr3:129033614-129035120"	NA	inter
CUST_14278_PI429285431	0.8944718	A	0.8934154	A	1.0007325088352	0	lncRNA	15937-1_{1..278}	lnc-ZNF777-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF777-1:1	chr7	149097627	149097904	-	lnc-ZNF777-1	lnc-ZNF777-1:1	XLOC_006640	linc-ZNF425	NA	NA	NA	inter
CUST_23289_PI429285431	0.8986965	A	1.093967	A	0.873409119574358	0	lncRNA	24860-1_{1..369}	lnc-RPP40-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPP40-2:1	chr6	  4775506	  4775874	-	lnc-RPP40-2	lnc-RPP40-2:1	ENSG00000236336.1	RP3-430A16.1	CDYL	NA	chr6:4765506-4785642	inter
LNCA_33_P3409238	6.3571825	P	6.523899	P	0.89086794539574	0	lncRNA	XR_110199	XR_110199	XR_110199	   401286	Hs.487182	LOC401286	uncharacterized LOC401286	NA	NP852283	NA	"PREDICTED: Homo sapiens hypothetical LOC401286 (LOC401286), miscRNA [XR_110199]"	chr6:168069968-168069909	hs|6q27	Agilent_HUMAN_G3V2	XR_110199	XR_110199	chr6	168069909	168069968	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35365_PI429285431	7.8920374	P	7.1924505	P	1.62403970006199	0	lncRNA	36773-1_{1..1247}	n342406|AK057760|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4898|NULL|2.1286800|-0.2503921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342406|AK057760|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4898|NULL|2.1286800|-0.2503921	chr2	 32092895	 32094141	-	NA	NA	NA	NA	MEMO1	NA	chr2:32092892-32235698	inner
CUST_21974_PI429285431	7.3619757	P	6.504509	P	1.81185399113268	0	lncRNA	23582-1_{1..138}	lnc-POU3F2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POU3F2-1:1	chr6	 99006310	 99006447	+	lnc-POU3F2-1	lnc-POU3F2-1:1	ENSG00000235504.1	RP3-453D15.1	NA	NA	NA	inter
CUST_23737_PI429285431	3.5459173	P	3.1919787	P	1.27804496942698	0	lncRNA	25300-1_{1..433}	lnc-REV3L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-REV3L-1:1	chr6	111580133	111580565	-	lnc-REV3L-1	lnc-REV3L-1:1	ENSG00000231046.1	RP11-428F8.2	KIAA1919	NA	chr6:111580482-111590237	inter
CUST_50233_PI429285431	6.627584	P	6.4491267	P	1.13167311945155	0	lncRNA	53957-1_{1..412}	hg19_lincRNAsTranscripts_TCONS_l2_00028770 range=chr9:67290994-67293746 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028770 range=chr9:67290994-67293746 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 67290994	 67291405	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24696_PI429285431	0.9230308	M	0.9118322	A	1.00779248259776	0	lncRNA	26242-1_{1..764}	lnc-PHKB-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHKB-3:1	chr16	 47235986	 47236749	+	lnc-PHKB-3	lnc-PHKB-3:1	ENSG00000260744.1	RP11-329J18.3	ITFG1	NA	chr16:47225986-47246340	inner
LNCA_21_P0014758	2.2166142	A	1.2159812	A	2.00087771687099	0	lncRNA	XR_132514	XR_132514	XR_132514	NA	NA	LOC100652921	uncharacterized LOC100652921	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652921 (LOC100652921), miscRNA [XR_132514]"	chr6:64286350-64282575	hs|6q12	Agilent_HUMAN_G3V2	XR_132514	XR_132514	chr6	 64282575	 64286350	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_755_PI429285431	2.5187478	A	2.5232558	A	0.996880169327619	0	lncRNA	746-1_{1..399}	"transcript_id ""ENST00000453100.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453100.1"" | genecode_v17"	chr2	 11539180	 11539578	+	ENSG00000224177.2	ENST00000453100.1	LINC00570	LINC00570-002	NA	NA	NA	inter
CUST_47810_PI429285431	18.781652	P	18.781652	P	1	0	lncRNA	51726-4_{9001..12000}	"gi|374429547|ref|NR_046235.1| Homo sapiens RNA, 45S pre-ribosomal 5 (RNA45S5), ribosomal RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ensembl.GRCh37.72,ncbi,"	">gi|374429547|ref|NR_046235.1| Homo sapiens RNA, 45S pre-ribosomal 5 (RNA45S5), ribosomal RNA"	NA	NA	NA	NA	NA	NR_046235.1	NA	NA	NA	NA	NA	Unknown
CUST_18159_PI429285431	0.9225732	A	1.4891305	A	0.675226158146124	0	lncRNA	19894-1_{1..627}	lnc-HSCB-1:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HSCB-1:17	chr22	 28395418	 28396044	+	lnc-HSCB-1	lnc-HSCB-1:17	ENSG00000235954	TTC28-AS1	TTC28	NA	chr22:28385418-28405645	inner
CUST_1389_PI429285431	0.9136737	A	0.9093107	A	1.00302877865835	0	lncRNA	1378-1_{1..339}	"transcript_id ""ENST00000496674.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000496674.1"" | genecode_v17"	chr3	 78316156	 78316494	+	ENSG00000240241.1	ENST00000496674.1	RP11-314M24.1	RP11-314M24.1-003	NA	NA	NA	inter
CUST_20698_PI429285431	2.4277294	A	2.2363002	A	1.14189436876987	0	lncRNA	22334-1_{1..561}	lnc-C17orf48-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf48-2:4	chr17	 10718216	 10718776	+	lnc-C17orf48-2	lnc-C17orf48-2:4	ENSG00000263523.1	RP11-963H4.6	PIRT	"hg19_refFlat_TMEM220:range=chr17:10618770-106331685'pad=0,hg19_refFlat_TMEM220:range=chr17:10618770-106331685'pad=0 3'pad=0 strand=- repeatMasking=none,-99.20chr17:10725792-10728481"	NA	inter
CUST_30317_PI429285431	2.407362	A	2.9639463	A	0.679910002871705	0	lncRNA	32093-1_{1..541}	n335228|AY540014|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255309|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255309|3.1610400|-0.3220613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335228|AY540014|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255309|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255309|3.1610400|-0.3220613	chrX	 10443202	 10443742	-	NA	NA	NA	NA	MID1	NA	chrX:10433202-10545202	inner
CUST_10331_PI429285431	1.3784088	A	0.91110283	A	1.38252538452289	0	lncRNA	11859-1_{1..394}	lnc-SLC40A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC40A1-1:2	chr2	190305749	190306142	-	lnc-SLC40A1-1	lnc-SLC40A1-1:2	XLOC_002433	linc-COL5A2	WDR75	NA	chr2:190295749-190315807	inter
CUST_38107_PI429285431	6.8579135	P	6.767172	P	1.06491737595062	0	lncRNA	39181-1_{1..1201}	n381174|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001dub.2||-1.2489400|-0.2248080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n381174|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001dub.2||-1.2489400|-0.2248080	chr1	101491408	101492608	+	NA	NA	NA	NA	DPH5	NA	chr1:101481408-101491362	inter
CUST_15184_PI429285431	0.92397815	A	0.91664094	A	1.00509872088655	0	lncRNA	16849-1_{1..379}	lnc-LZTS1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LZTS1-2:4	chr8	 20810905	 20811283	-	lnc-LZTS1-2	lnc-LZTS1-2:4	XLOC_007018	linc-LZTS1-2	NA	NA	NA	inter
CUST_13376_PI429285431	2.0391212	A	1.3383383	A	1.62538659372789	0	lncRNA	15011-1_{1..285}	lnc-LRRC4C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC4C-1:1	chr11	 41735955	 41736239	-	lnc-LRRC4C-1	lnc-LRRC4C-1:1	XLOC_009421	linc-LRRC4C-3	NA	NA	NA	inter
CUST_6394_PI429285431	3.5606732	P	3.8184469	P	0.836377583149557	0	lncRNA	6326-1_{1..429}	"transcript_id ""ENST00000599738.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599738.1"" | genecode_v17"	chr19	 22786071	 22786499	+	ENSG00000268823.1	ENST00000599738.1	CTC-457E21.6	CTC-457E21.6-001	NA	NA	NA	inter
CUST_22194_PI429285431	1.0984838	A	0.9077495	A	1.14134448726151	0	lncRNA	23794-1_{1..818}	lnc-FOXG1-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXG1-6:3	chr14	 27133246	 27134063	+	lnc-FOXG1-6	lnc-FOXG1-6:3	ENSG00000257842.1	NOVA1-AS1	NA	NA	NA	inter
CUST_30323_PI429285431	0.9076973	A	0.91362685	A	0.995898383834927	0	lncRNA	32099-1_{1..261}	n335237|AY543660|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255356|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255356|0.1406590|-0.3270985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335237|AY543660|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255356|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255356|0.1406590|-0.3270985	chr4	 76995863	 76996123	+	NA	NA	NA	NA	ART3	NA	chr4:76985863-77013052	inner
CUST_46159_PI429285431	0.915558	A	0.9054328	A	1.00704293949232	0	lncRNA	50408-1_{1..2092}	"gi|300796664|ref|NR_034132.1| Homo sapiens uncharacterized LOC400084 (LOC400084), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300796664|ref|NR_034132.1| Homo sapiens uncharacterized LOC400084 (LOC400084), non-coding RNA"	Chr12	126443230	126445321	-	400084	NR_034132.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00"	NA	inter
CUST_50029_PI429285431	0.90241975	A	0.96472377	A	0.957733373222017	0	lncRNA	53766-2_{3001..3941}	hg19_lincRNAsTranscripts_TCONS_l2_00028126 range=chr8:23569205-23584509 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028126 range=chr8:23569205-23584509 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 23572205	 23573145	-	NA	NA	NA	NA	NKX2-6	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr8:23559964-23563922"	NA	inter
CUST_47471_PI429285431	3.8672774	P	3.7836256	P	1.05969699058355	0	lncRNA	51495-1_{1..3000}	"gi|156713452|ref|NR_003714.1| Homo sapiens POM121 transmembrane nucleoporin-like 9, pseudogene (POM121L9P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|156713452|ref|NR_003714.1| Homo sapiens POM121 transmembrane nucleoporin-like 9, pseudogene (POM121L9P), non-coding RNA"	Chr22	 24647589	 24650588	+	29774	NR_003714.1	NA	NA	NA	"hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0,hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.00"	NA	inter
CUST_33703_PI429285431	1.3414965	A	0.89894253	A	1.35900802000194	0	lncRNA	35264-1_{1..3000}	n340482|AK128092|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2943|NULL|0.5680120|-0.2581361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340482|AK128092|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2943|NULL|0.5680120|-0.2581361	chr17	  6676149	  6679148	-	NA	NA	NA	NA	FBXO39	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_XAF1:range=chr17:6659398-66764885'pad=0,hg19_refFlat_XAF1:range=chr17:6659398-66764885'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr17:6679552-6689435"	NA	inter
CUST_14751_PI429285431	4.816985	P	5.379741	P	0.677007630731159	0	lncRNA	16414-2_{3001..3069}	lnc-SNTG2-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNTG2-4:3	chr2	   668302	   668370	+	lnc-SNTG2-4	lnc-SNTG2-4:3	XLOC_001309	linc-SNTG2-3	TMEM18	NA	chr2:667973-677014	inter
CUST_47755_PI429285431	3.2274256	A	2.407879	A	1.76485126043766	0	lncRNA	51696-1_{1..3000}	"gi|385137074|ref|NR_047612.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 42, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137074|ref|NR_047612.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 42, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047612.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0012969	6.2304363	P	6.312072	P	0.944985632518558	0	lncRNA	XR_108578	XR_108578	XR_108578	NA	Hs.146092	LOC100506791	uncharacterized LOC100506791	ENST00000503067	THC2604936	NA	"PREDICTED: Homo sapiens hypothetical LOC100506791, transcript variant 1 (LOC100506791), miscRNA [XR_108578]"	chr5:1364346-1364287	hs|5p15.33	Agilent_HUMAN_G3V2	XR_108578	XR_108578	chr5	  1364287	  1364346	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44308_PI429285431	0.8969223	A	0.89492697	A	1.0013840142287	0	lncRNA	48940-1_{1..342}	"gi|300388191|ref|NR_034062.1| Homo sapiens hCG1645011-like (LOC100131635), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300388191|ref|NR_034062.1| Homo sapiens hCG1645011-like (LOC100131635), non-coding RNA"	Chr3	187420154	187420495	+	100131635	NR_034062.1	NA	NA	NA	NA	NA	inter
CUST_31555_PI429285431	8.159812	P	8.151154	P	1.00601931197677	0	lncRNA	33313-1_{1..676}	n338046|BC038758|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|433|NULL|-0.8408620|-0.2117570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338046|BC038758|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|433|NULL|-0.8408620|-0.2117570	chr15	 77952393	 77953068	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008259	2.0009472	A	0.91042364	A	2.12951303378745	0	lncRNA	TCONS_00022293	NA	NA	NA	NA	XLOC_010654	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010654), lincRNA [TCONS_00022293]"	chr13:75306898-75306839	hs|13q22.1	Agilent_HUMAN_G3V2	TCONS_00022293	TCONS_00022293	chr13	 75306839	 75306898	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20321_PI429285431	0.895345	A	1.1749784	A	0.823800324725354	0	lncRNA	21964-1_{1..585}	lnc-HMBOX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMBOX1-2:1	chr8	 28925685	 28926269	+	lnc-HMBOX1-2	lnc-HMBOX1-2:1	ENSG00000259607.1	CTD-2647L4.5	KIF13B	NA	chr8:28924795-28935971	inner
CUST_24121_PI429285431	3.737772	P	3.8629775	P	0.916873432850435	0	lncRNA	25671-1_{1..560}	lnc-AKIP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AKIP1-2:1	chr11	  9078786	  9079345	+	lnc-AKIP1-2	lnc-AKIP1-2:1	ENSG00000253973.2	RP11-467K18.2	SCUBE2	NA	chr11:9068786-9088831	inner
CUST_47259_PI429285431	7.452339	P	7.610158	P	0.89637915192056	0	lncRNA	51331-1_{1..2134}	"gi|222537741|ref|NR_026728.1| Homo sapiens ER degradation enhancer, mannosidase alpha-like 2 (EDEM2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|222537741|ref|NR_026728.1| Homo sapiens ER degradation enhancer, mannosidase alpha-like 2 (EDEM2), transcript variant 3, non-coding RNA"	Chr20	 33703160	 33705293	-	55741	NR_026728.1	NA	NA	NA	NA	NA	inter
CUST_11427_PI429285431	0.92387736	A	0.93055606	A	0.995381376720873	0	lncRNA	12995-1_{1..430}	lnc-WDR37-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR37-3:2	chr10	  2114703	  2115132	+	lnc-WDR37-3	lnc-WDR37-3:2	XLOC_008339	linc-PFKP-6	NA	NA	NA	inter
CUST_50959_PI429285431	3.1189091	P	3.4403088	P	0.800293058004884	0	lncRNA	54600-1_{1..233}	hg19_lincRNAsTranscripts_TCONS_l2_00005758 range=chr12:76531795-76532210 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005758 range=chr12:76531795-76532210 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 76531795	 76532027	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15732_PI429285431	1.6141177	A	1.9515098	A	0.791470728340756	0	lncRNA	17417-1_{1..2585}	lnc-WRNIP1-2:35	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRNIP1-2:35	chr6	  2482221	  2484805	+	lnc-WRNIP1-2	lnc-WRNIP1-2:35	XLOC_005127	linc-WRNIP1-2	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20"	NA	inter
CUST_40952_PI429285431	0.8921514	A	0.89020866	A	1.00134751183286	0	lncRNA	41629-1_{1..2574}	n410942|NR_038404|lncRNA|Homosapiens||RefGeneNoncode|NR_038404||-1.0451600|-0.2116640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410942|NR_038404|lncRNA|Homosapiens||RefGeneNoncode|NR_038404||-1.0451600|-0.2116640	chr1	 21619782	 21622355	+	NA	NA	NA	NA	ECE1	NA	chr1:21609782-21636362	inner
CUST_21546_PI429285431	1.1527257	A	1.1479748	A	1.00329850106158	0	lncRNA	23163-1_{1..561}	lnc-BCL7C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BCL7C-1:1	chr16	 30906245	 30906805	-	lnc-BCL7C-1	lnc-BCL7C-1:1	ENSG00000262721.1	AC106782.20	BCL7C	NA	chr16:30899116-30905399	inter
CUST_4221_PI429285431	2.361214	A	2.8163521	A	0.729440344103623	0	lncRNA	4180-1_{1..348}	"transcript_id ""ENST00000537555.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537555.1"" | genecode_v17"	chr12	 31165437	 31165784	+	ENSG00000256984.1	ENST00000537555.1	RP11-551L14.6	RP11-551L14.6-001	NA	NA	NA	inter
CUST_2955_PI429285431	1.7433586	A	2.093314	A	0.784608353190257	0	lncRNA	2936-1_{1..432}	"transcript_id ""ENST00000426187.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426187.1"" | genecode_v17"	chr7	156225217	156225648	-	ENSG00000228569.1	ENST00000426187.1	AC073133.2	AC073133.2-001	NA	NA	NA	inter
CUST_10750_PI429285431	1.17958	A	1.9265764	A	0.595842774109428	0	lncRNA	12286-1_{1..343}	lnc-EPHA4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPHA4-1:1	chr2	221801764	221802106	-	lnc-EPHA4-1	lnc-EPHA4-1:1	XLOC_002499	linc-OBSL1-3	NA	NA	NA	inter
CUST_45495_PI429285431	0.902406	A	1.1298313	A	0.854157901868801	0	lncRNA	49908-1_{1..2182}	"gi|242118011|ref|NR_027916.1| Homo sapiens aldo-keto reductase family 1, member C-like 1 (AKR1CL1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|242118011|ref|NR_027916.1| Homo sapiens aldo-keto reductase family 1, member C-like 1 (AKR1CL1), non-coding RNA"	NA	NA	NA	NA	NA	NR_027916.1	NA	NA	NA	NA	NA	Unknown
CUST_28052_PI429285431	0.9149417	A	1.1343856	A	0.858896442129108	0	lncRNA	29670-1_{1..2681}	n325318|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326189|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326189|-0.1794530|-0.2681291	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325318|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326189|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326189|-0.1794530|-0.2681291	chr2	 45035306	 45037986	+	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90"	NA	inter
CUST_8458_PI429285431	0.904487	A	0.91104555	A	0.995464277160119	0	lncRNA	10026-1_{1..2290}	lnc-ZCCHC12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZCCHC12-1:1	chrX	117990160	117992449	+	lnc-ZCCHC12-1	lnc-ZCCHC12-1:1	ENSG00000203650	XLOC_008051	NA	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-27.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.06;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90"	NA	inter
LNCA_21_P0005912	0.9041957	A	0.89691955	A	1.00505618242385	0	lncRNA	TCONS_00015179	NA	NA	NA	NA	XLOC_007234	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007234), lincRNA [TCONS_00015179]"	chr8:136683505-136683446	hs|8q24.23	Agilent_HUMAN_G3V2	TCONS_00015179	TCONS_00015179	chr8	136683446	136683505	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37111_PI429285431	1.2368662	A	0.89561725	A	1.26685284171062	0	lncRNA	38236-1_{1..2669}	n345554|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1103|NULL|-1.3727600|-0.3543115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345554|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1103|NULL|-1.3727600|-0.3543115	chr2	178063398	178066066	-	NA	NA	NA	NA	HNRNPA3	NA	chr2:178077422-178087157	inter
CUST_49037_PI429285431	5.5423355	P	4.0962024	P	2.72476743897931	0	lncRNA	52866-1_{1..1090}	hg19_lincRNAsTranscripts_TCONS_l2_00020697 range=chr4:119388742-119414716 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020697 range=chr4:119388742-119414716 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	119388742	119389831	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46735_PI429285431	6.923088	P	5.5360103	P	2.61548355677994	0	lncRNA	50887-2_{3001..3373}	"gi|378925609|ref|NR_046398.1| Homo sapiens XIAP associated factor 1 (XAF1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378925609|ref|NR_046398.1| Homo sapiens XIAP associated factor 1 (XAF1), transcript variant 5, non-coding RNA"	Chr17	  6662156	  6662528	+	54739	NR_046398.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00"	NA	inter
CUST_28927_PI429285431	1.1234578	A	1.7326039	A	0.655584613476954	0	lncRNA	30644-1_{1..492}	n326352|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000083637|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000083637|-1.2356000|-0.4974211	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326352|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000083637|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000083637|-1.2356000|-0.4974211	chr1	163834323	163834814	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19505_PI429285431	2.3794777	A	2.2124944	A	1.12270842602198	0	lncRNA	21161-1_{1..464}	lnc-TYMS-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TYMS-4:1	chr18	   739338	   739801	+	lnc-TYMS-4	lnc-TYMS-4:1	ENSG00000264339.1	RP11-769O8.2	YES1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20chr18:729338-749444"	NA	inner
LNCA_19_P00810229	1.6873946	A	1.9642673	A	0.825378234723912	0	lncRNA	TCONS_00004551	NA	NA	NA	NA	XLOC_002455	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002455), lincRNA [TCONS_00004551]"	chr2:200835789-200835730	hs|2q33.1	Agilent_HUMAN_G3V2	TCONS_00004551	TCONS_00004551	chr2	200835730	200835789	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19210_PI429285431	1.0190654	A	1.0589501	A	0.972732684975505	0	lncRNA	20880-1_{1..1169}	lnc-EVX1-5:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EVX1-5:6	chr7	 27226302	 27227470	+	lnc-EVX1-5	lnc-EVX1-5:6	ENSG00000240990.4	HOXA11-AS	HOXA10	NA	chr7:27216302-27219880	inter
CUST_6938_PI429285431	3.4542599	P	3.7694707	P	0.803733544294048	0	lncRNA	6887-1_{1..570}	"transcript_id ""ENST00000453273.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453273.1"" | genecode_v17"	chr22	 21666029	 21666598	-	ENSG00000206142.5	ENST00000453273.1	FAM230C	FAM230C-005	RIMBP3B	NA	chr22:21656029-21689226	inter
CUST_31408_PI429285431	2.8079932	A	2.421204	A	1.30748029153957	0	lncRNA	33181-1_{1..2116}	n337873|AK094540|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|256|NULL|-1.1938200|-0.2793841	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337873|AK094540|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|256|NULL|-1.1938200|-0.2793841	chrX	139863223	139865338	+	NA	NA	NA	NA	CDR1	NA	chrX:139865425-139866723	inter
CUST_165_PI429201921	0.91491085	A	0.89836234	A	1.01153659210254	0	lncRNA	141-1_{1..3000}	TC0Y000247.hg.1	TCONS_l2_00030979-XLOC_l2_015876 // Broad TUCP // linc-TSPY4-1 chrY:+:8777988-8782196 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:+:8777988-8782196	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00030979-XLOC_l2_015876	linc-TSPY4-1	chrY	  8777988	  8782196	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19192_PI429285431	1.007101	A	1.0855317	A	0.947087286381375	0	lncRNA	20862-1_{1..444}	lnc-ZBTB10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZBTB10-2:1	chr8	 81252036	 81252479	+	lnc-ZBTB10-2	lnc-ZBTB10-2:1	ENSG00000253238.1	RP11-941H19.3	NA	NA	NA	inter
CUST_4397_PI429285431	0.8922733	A	1.1875745	A	0.814902182679973	0	lncRNA	4347-1_{1..713}	"transcript_id ""ENST00000551174.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551174.1"" | genecode_v17"	chr12	103941604	103942316	+	ENSG00000257762.1	ENST00000551174.1	RP11-626I20.3	RP11-626I20.3-002	NA	NA	NA	inter
CUST_22945_PI429285431	0.8926425	A	0.8884372	A	1.00291914426641	0	lncRNA	24521-1_{1..635}	lnc-C9orf68-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C9orf68-1:1	chr9	  4071726	  4072360	-	lnc-C9orf68-1	lnc-C9orf68-1:1	ENSG00000230001.1	RP11-70J12.1	GLIS3	NA	chr9:4061726-4081884	inner
CUST_12903_PI429285431	5.636405	P	6.0367174	P	0.757694195010996	0	lncRNA	14532-1_{1..495}	lnc-ARHGAP20-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGAP20-1:1	chr11	110794355	110794849	-	lnc-ARHGAP20-1	lnc-ARHGAP20-1:1	XLOC_009548	linc-ARHGAP20-1	NA	NA	NA	inter
CUST_6694_PI429285431	1.31148	A	1.6242621	A	0.805087726288975	0	lncRNA	6643-1_{1..426}	"transcript_id ""ENST00000445278.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445278.1"" | genecode_v17"	chr20	 38749682	 38750107	+	ENSG00000223410.1	ENST00000445278.1	RP1-191L6.2	RP1-191L6.2-001	NA	NA	NA	inter
CUST_21302_PI429285431	0.90392095	A	0.89609706	A	1.0054378389593	0	lncRNA	22927-1_{1..499}	lnc-USP9Y-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-USP9Y-2:1	chrY	 14467867	 14468365	+	lnc-USP9Y-2	lnc-USP9Y-2:1	ENSG00000239204.1	AC002992.4	NA	NA	NA	inter
CUST_11016_PI429285431	1.5401115	A	0.9069432	A	1.55096733282612	0	lncRNA	12561-1_{1..237}	lnc-ZC3H12B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZC3H12B-1:2	chrX	 64618473	 64618709	+	lnc-ZC3H12B-1	lnc-ZC3H12B-1:2	XLOC_008001	linc-ZC3H12B-1	NA	NA	NA	inter
CUST_21487_PI429285431	4.188777	P	4.0289955	P	1.11711793477781	0	lncRNA	23105-1_{1..592}	lnc-MTX1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTX1-1:3	chr1	155169963	155170554	+	lnc-MTX1-1	lnc-MTX1-1:3	ENSG00000231064.1	RP11-263K19.4	THBS3	"hg19_refFlat_THBS3:range=chr1:155165632-1551776675'pad=0,hg19_refFlat_THBS3:range=chr1:155165632-1551776675'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30chr1:155165379-155177690"	NA	inner
CUST_51420_PI429285431	0.91149235	A	0.91370785	A	0.998465510955569	0	lncRNA	54999-1_{1..2834}	hg19_lincRNAsTranscripts_TCONS_l2_00009997 range=chr16:11465883-11483271 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009997 range=chr16:11465883-11483271 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 11465883	 11468716	-	NA	NA	NA	NA	LOC388210	NA	chr16:11455883-11484311	inter
CUST_6675_PI429285431	0.9039628	A	0.88850695	A	1.01077077043043	0	lncRNA	6622-1_{1..343}	"transcript_id ""ENST00000440357.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440357.1"" | genecode_v17"	chr20	 25124001	 25124343	-	ENSG00000230725.1	ENST00000440357.1	RP4-738P15.1	RP4-738P15.1-004	NA	NA	NA	inter
CUST_44363_PI429285431	4.306034	P	4.3558135	P	0.966083972904914	0	lncRNA	48982-1_{1..1904}	"gi|385275099|ref|NR_047661.1| Homo sapiens PARK2 co-regulated-like (PACRGL), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385275099|ref|NR_047661.1| Homo sapiens PARK2 co-regulated-like (PACRGL), transcript variant 5, non-coding RNA"	Chr4	 20702036	 20703939	+	133015	NR_047661.1	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90"	NA	inter
CUST_14927_PI429285431	2.828495	A	0.9818232	A	3.59669494012996	0	lncRNA	16589-1_{1..1586}	lnc-AC069257.9.1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC069257.9.1-5:3	chr3	195375775	195377360	+	lnc-AC069257.9.1-5	lnc-AC069257.9.1-5:3	XLOC_002996	linc-MUC20-2	NA	NA	NA	inter
CUST_10082_PI429285431	0.91842616	A	0.9199283	A	0.998959337759108	0	lncRNA	11609-1_{1..417}	lnc-ENOPH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENOPH1-1:1	chr4	 83218455	 83218871	+	lnc-ENOPH1-1	lnc-ENOPH1-1:1	XLOC_003590	linc-ENOPH1-1	NA	NA	NA	inter
CUST_14542_PI429285431	7.192689	P	7.2360015	P	0.970424244867969	0	lncRNA	16210-1_{1..224}	lnc-TSNARE1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSNARE1-1:1	chr8	143277841	143278064	-	lnc-TSNARE1-1	lnc-TSNARE1-1:1	XLOC_007243	linc-FLJ43860	NA	NA	NA	inter
CUST_30982_PI429285431	3.2980337	P	3.2643132	P	1.02364856503372	0	lncRNA	32770-1_{1..314}	n337134|AB271914|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383708|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383708|0.0521650|-0.3148663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337134|AB271914|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383708|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383708|0.0521650|-0.3148663	chr8	101300135	101300448	-	NA	NA	NA	NA	RNF19A	NA	chr8:101290135-101322327	inner
CUST_37607_PI429285431	7.3192763	P	6.765686	P	1.46773376628774	0	lncRNA	38705-1_{1..444}	n346084|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1634|NULL|-1.5437900|-0.4293025	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346084|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1634|NULL|-1.5437900|-0.4293025	chr15	 23198509	 23198952	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32594_PI429285431	4.5922728	P	5.0765777	P	0.714841402222351	0	lncRNA	34255-1_{1..1916}	n339213|AK093245|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1645|NULL|-1.1566100|-0.2801359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339213|AK093245|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1645|NULL|-1.1566100|-0.2801359	chr16	 52039403	 52041318	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22189_PI429285431	0.9062578	A	0.90156907	A	1.00325526689074	0	lncRNA	23789-1_{1..515}	lnc-NUP210-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUP210-1:1	chr3	 13521143	 13521657	-	lnc-NUP210-1	lnc-NUP210-1:1	ENSG00000244502.2	HDAC11-AS1	HDAC11	NA	chr3:13521715-13531553	inter
CUST_44678_PI429285431	4.430725	P	3.493102	P	1.91536985332142	0	lncRNA	49238-1_{1..2102}	"gi|301898124|ref|NR_036448.1| Homo sapiens dystrobrevin binding protein 1 (DTNBP1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301898124|ref|NR_036448.1| Homo sapiens dystrobrevin binding protein 1 (DTNBP1), transcript variant 3, non-coding RNA"	Chr6	 15523794	 15525895	-	84062	NR_036448.1	NA	NA	NA	NA	NA	inter
CUST_49526_PI429285431	0.9100131	A	0.9160207	A	0.995844507052867	0	lncRNA	53318-1_{1..1145}	hg19_lincRNAsTranscripts_TCONS_l2_00024745 range=chr6:40825508-40827706 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024745 range=chr6:40825508-40827706 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 40825508	 40826652	-	NA	NA	NA	NA	NA	"hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0,hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20"	NA	inter
CUST_32543_PI429285431	0.912385	A	0.9188757	A	0.995511094982024	0	lncRNA	34209-1_{1..738}	n339157|BC047944|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1587|NULL|-0.7497430|-0.2634798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339157|BC047944|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1587|NULL|-0.7497430|-0.2634798	chr2	223422794	223423531	-	NA	NA	NA	NA	SGPP2	"hg19_refFlat_SGPP2:range=chr2:223289322-2234236175'pad=0,hg19_refFlat_SGPP2:range=chr2:223289322-2234236175'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.60chr2:223412794-223423617"	NA	inner
CUST_9382_PI429285431	0.8964095	A	1.4413257	A	0.68543121510862	0	lncRNA	10885-1_{1..2452}	lnc-CTD-2210P24.4.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2210P24.4.1-1:5	chr11	 45765580	 45768031	+	lnc-CTD-2210P24.4.1-1	lnc-CTD-2210P24.4.1-1:5	XLOC_009124	linc-SLC35C1-1	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30"	NA	inter
CUST_2556_PI429285431	1.6407568	A	0.89209366	A	1.68023513457849	0	lncRNA	2544-1_{1..618}	"transcript_id ""ENST00000432484.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432484.2"" | genecode_v17"	chr6	 75239964	 75240581	-	ENSG00000270297.1	ENST00000432484.2	RP11-554D15.3	RP11-554D15.3-001	NA	NA	NA	inter
CUST_32007_PI429285431	1.6185731	A	1.617	A	1.00109098452086	0	lncRNA	33728-2_{3001..3565}	n338570|AK127758|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|976|NULL|-1.2193400|-0.3121581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338570|AK127758|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|976|NULL|-1.2193400|-0.3121581	chr1	234808268	234808832	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48352_PI429285431	6.187877	P	3.7404063	P	5.4545897771856	0	lncRNA	52209-1_{1..379}	hg19_lincRNAsTranscripts_TCONS_l2_00001296 range=chr1:79520521-79521039 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001296 range=chr1:79520521-79521039 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 79520521	 79520899	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26626_PI429285431	0.9121666	A	0.9224454	A	0.992900599416939	0	lncRNA	28129-1_{1..587}	lnc-UMODL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UMODL1-3:1	chr21	 43291844	 43292430	+	lnc-UMODL1-3	lnc-UMODL1-3:1	ENSG00000236545.1	AP001619.3	PRDM15	NA	chr21:43281844-43299591	inner
CUST_51566_PI429285431	0.9749143	A	1.2915295	A	0.802951525825024	0	lncRNA	55131-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00010599 range=chr17:19398722-19410608 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010599 range=chr17:19398722-19410608 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 19398722	 19401721	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-58.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.31;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_34457_PI429285431	7.8397717	P	6.8927183	P	1.92793097471233	0	lncRNA	35931-3_{6001..6237}	n341331|D86978|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3800|NULL|19.5145000|-0.3275288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341331|D86978|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3800|NULL|19.5145000|-0.3275288	chr7	135248687	135248923	+	NA	NA	NA	NA	NUP205	NA	chr7:135242662-135333501	inner
CUST_20063_PI429285431	1.34907	A	1.4627727	A	0.924213007854344	0	lncRNA	21714-1_{1..476}	lnc-CPS1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPS1-1:2	chr2	211333406	211333881	+	lnc-CPS1-1	lnc-CPS1-1:2	ENSG00000234281.1	AC007970.1	CPS1	NA	chr2:211342406-211343418	inner
CUST_18781_PI429285431	3.9830246	P	4.3685985	P	0.765474434412471	0	lncRNA	20477-1_{1..1756}	lnc-NDFIP2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDFIP2-2:2	chr13	 79996122	 79997877	+	lnc-NDFIP2-2	lnc-NDFIP2-2:2	ENSG00000227354	RBM26-AS1	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	inter
CUST_28106_PI429285431	2.0528686	A	2.3271003	A	0.82689055733457	0	lncRNA	29728-1_{1..374}	n325378|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324019|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324019|-1.2737200|-0.3748591	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325378|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324019|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324019|-1.2737200|-0.3748591	chr2	 21714807	 21715180	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2978_PI429285431	2.281764	A	1.9643381	A	1.24610522572448	0	lncRNA	2957-1_{1..562}	"transcript_id ""ENST00000517984.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517984.1"" | genecode_v17"	chr8	  2527341	  2527902	-	ENSG00000254319.1	ENST00000517984.1	RP11-134O21.1	RP11-134O21.1-001	NA	NA	NA	inter
CUST_26228_PI429285431	0.92025226	A	1.3294363	A	0.753049163112017	0	lncRNA	27735-1_{1..586}	lnc-USP28-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP28-1:1	chr11	113641992	113642577	-	lnc-USP28-1	lnc-USP28-1:1	ENSG00000256603.1	RP11-667M19.2	ZW10	NA	chr11:113631992-113644425	inner
CUST_3486_PI429285431	3.8354597	P	4.273973	P	0.73789461879885	0	lncRNA	3457-1_{1..307}	"transcript_id ""ENST00000454594.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000454594.1"" | genecode_v17"	chr9	 96717879	 96718185	+	ENSG00000235601.1	ENST00000454594.1	RP11-231K24.2	RP11-231K24.2-002	BARX1	NA	chr9:96713909-96717608	inter
CUST_50735_PI429285431	3.91499	P	3.9237661	P	0.993935335797566	0	lncRNA	54403-1_{1..350}	hg19_lincRNAsTranscripts_TCONS_l2_00003294 range=chr10:124432392-124436539 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003294 range=chr10:124432392-124436539 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	124432392	124432741	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16199_PI429285431	7.446614	P	7.4183736	P	1.01976759534899	0	lncRNA	17905-1_{1..431}	lnc-NUFIP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUFIP1-1:1	chr13	 45464165	 45464595	-	lnc-NUFIP1-1	lnc-NUFIP1-1:1	XLOC_010590	linc-TSC22D1-1	NA	NA	NA	inter
CUST_36889_PI429285431	0.9067981	A	1.1488732	A	0.845528271959019	0	lncRNA	38048-1_{1..1363}	n345361|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_910|NULL|-1.3196700|-0.2567881	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345361|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_910|NULL|-1.3196700|-0.2567881	chr18	 46485879	 46487241	-	NA	NA	NA	NA	SMAD7	NA	chr18:46475879-46477081	inter
CUST_31103_PI429285431	5.009105	P	5.46244	P	0.730352578568165	0	lncRNA	32894-1_{1..281}	n337385|DQ655977|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393090|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393090|-1.2021300|-0.1207501	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337385|DQ655977|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393090|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393090|-1.2021300|-0.1207501	chr21	 34757299	 34757579	-	NA	NA	NA	NA	IFNGR2	"hg19_refFlat_IFNGR2:range=chr21:34775850-348092695'pad=0,hg19_refFlat_IFNGR2:range=chr21:34775850-348092695'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60chr21:34775202-34797274"	NA	inner
CUST_25163_PI429285431	0.90227205	A	0.9158795	A	0.990612375866873	0	lncRNA	26700-1_{1..3000}	lnc-SPAM1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPAM1-3:1	chr7	124031483	124034482	+	lnc-SPAM1-3	lnc-SPAM1-3:1	ENSG00000242593.1	RP5-921G16.1	NA	"hg19_refFlat_TMEM229A:range=chr7:123671915-1236730575'pad=0,hg19_refFlat_TMEM229A:range=chr7:123671915-1236730575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00"	NA	inter
CUST_8395_PI429285431	1.2123595	A	0.9016812	A	1.24029070010052	0	lncRNA	9973-1_{1..2242}	lnc-RPUSD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RPUSD2-1:1	chr15	 40849153	 40851394	+	lnc-RPUSD2-1	lnc-RPUSD2-1:1	ENSG00000246741	ENSG00000259536.1	C15orf57	"hg19_refFlat_C15orf57:range=chr15:40846170-408569795'pad=0,hg19_refFlat_C15orf57:range=chr15:40846170-408569795'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_C15orf57:range=chr15:40846170-408552145'pad=0,hg19_refFlat_C15orf57:range=chr15:40846170-408552145'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20chr15:40845298-40857252"	NA	inner
CUST_39063_PI429285431	0.9054079	A	0.92213714	A	0.988471146929081	0	lncRNA	40039-1_{1..3000}	n385527|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004acg.2||0.8578450|-0.1741851	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n385527|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004acg.2||0.8578450|-0.1741851	chr9	 42466316	 42469315	+	NA	NA	NA	NA	CBWD7	NA	chr9:42478004-42484237	inter
CUST_13064_PI429285431	1.5340829	A	1.051177	A	1.39755581309107	0	lncRNA	14691-1_{1..3000}	lnc-TSHZ1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSHZ1-1:1	chr18	 72891791	 72894790	+	lnc-TSHZ1-1	lnc-TSHZ1-1:1	XLOC_012720	linc-TSHZ1-2	NA	NA	NA	inter
CUST_14303_PI429285431	0.9016022	A	1.3001475	A	0.758622833222694	0	lncRNA	15963-1_{1..487}	lnc-MIDN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MIDN-1:1	chr19	  1262039	  1262525	+	lnc-MIDN-1	lnc-MIDN-1:1	XLOC_012912	linc-CIRBP	CIRBP	NA	chr19:1269267-1272238	inter
LNCA_21_P0002904	2.2714071	A	2.3984528	A	0.915704679340769	0	lncRNA	ENST00000495159	NA	NA	NA	NA	XLOC_003317	NA	ENST00000495159	NA	NA	"BROAD Institute lincRNA (XLOC_003317), lincRNA [TCONS_00005878]"	chr3:166287620-166287561	hs|3q26.1	Agilent_HUMAN_G3V2	ENST00000495159	ENST00000495159	chr3	166287561	166287620	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17985_PI429285431	0.8976954	A	0.9011296	A	0.997622424872305	0	lncRNA	19718-1_{1..792}	lnc-ANKRD30A-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD30A-5:1	chr10	 37718973	 37719764	+	lnc-ANKRD30A-5	lnc-ANKRD30A-5:1	XLOC_008455	linc-ZNF33A-4	NA	NA	NA	inter
CUST_39811_PI429285431	3.7655942	P	4.1994133	P	0.740299469571562	0	lncRNA	40721-1_{1..2661}	n406224|NR_003676|lncRNA|Homosapiens||RefGeneNoncode|NR_003676||7.8531000|-0.2258474	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406224|NR_003676|lncRNA|Homosapiens||RefGeneNoncode|NR_003676||7.8531000|-0.2258474	chr16	 22557018	 22559678	+	NA	NA	NA	NA	LOC100132247	NA	chr16:22547018-22547842	inter
CUST_50994_PI429285431	1.7800754	A	1.2374303	A	1.45664073920712	0	lncRNA	54639-1_{1..1062}	hg19_lincRNAsTranscripts_TCONS_l2_00006554 range=chr12:133179522-133181792 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006554 range=chr12:133179522-133181792 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	133179522	133180583	-	NA	NA	NA	NA	LOC100507055	NA	chr12:133179736-133187037	inner
CUST_50968_PI429285431	1.3161337	A	2.3920462	A	0.474370927473971	0	lncRNA	54609-1_{1..542}	hg19_lincRNAsTranscripts_TCONS_l2_00005789 range=chr12:80663900-80690703 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005789 range=chr12:80663900-80690703 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 80663900	 80664441	+	NA	NA	NA	NA	OTOGL	NA	chr12:80653900-80700703	inner
CUST_29160_PI429285431	2.7320423	A	2.776594	P	0.969591058800103	0	lncRNA	30903-1_{1..614}	n326671|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000009331|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000009331|-0.8118470|-0.3026695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326671|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000009331|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000009331|-0.8118470|-0.3026695	chr1	 25309535	 25310148	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011828	1.1097865	A	1.8189185	A	0.61168805134555	0	lncRNA	TCONS_l2_00013846	NA	NA	NA	NA	XLOC_l2_007449	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007449), lincRNA [TCONS_l2_00013846]"	chr2:98306757-98317642	hs|2q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00013846	TCONS_l2_00013846	chr2	 98306757	 98317642	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004963	0.9193255	A	0.9249203	A	0.996129489962301	0	lncRNA	TCONS_00012005	NA	NA	NA	NA	XLOC_005520	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005520), lincRNA [TCONS_00012005]"	chr6:159528501-159528560	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_00012005	TCONS_00012005	chr6	159528501	159528560	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13274_PI429285431	6.5291758	P	6.455356	P	1.05249968389756	0	lncRNA	14905-1_{1..246}	lnc-TMEM88B-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM88B-4:2	chr1	  1317999	  1318244	+	lnc-TMEM88B-4	lnc-TMEM88B-4:2	XLOC_000017	linc-TMEM88B-1	AURKAIP1	NA	chr1:1309110-1310818	inter
CUST_20439_PI429285431	2.5136979	A	2.4656441	A	1.03386928987789	0	lncRNA	22083-1_{1..368}	lnc-BLZF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BLZF1-1:1	chr1	169291457	169291824	+	lnc-BLZF1-1	lnc-BLZF1-1:1	ENSG00000235575.1	RP4-800F24.1	NME7	NA	chr1:169281457-169301717	inner
CUST_45970_PI429285431	1.2199079	A	1.1585618	A	1.04343888265735	0	lncRNA	50263-1_{1..3000}	"gi|223468605|ref|NR_026788.1| Homo sapiens family with sequence similarity 66, member C (FAM66C), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223468605|ref|NR_026788.1| Homo sapiens family with sequence similarity 66, member C (FAM66C), non-coding RNA"	Chr12	  8332805	  8335804	+	440078	NR_026788.1	NA	NA	NA	NA	NA	inter
CUST_1293_PI429285431	0.8974821	A	0.897391	A	1.00006314770188	0	lncRNA	1283-1_{1..517}	"transcript_id ""ENST00000414603.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000414603.1"" | genecode_v17"	chr3	  6532490	  6533006	+	ENSG00000189229.10	ENST00000414603.1	AC069277.2	AC069277.2-007	NA	NA	NA	inter
CUST_14369_PI429285431	0.9055786	A	0.91188425	A	0.99563879427954	0	lncRNA	16029-1_{1..684}	lnc-REG1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-REG1B-1:1	chr2	 79157903	 79158586	-	lnc-REG1B-1	lnc-REG1B-1:1	XLOC_002178	linc-LRRTM4-7	NA	NA	NA	inter
CUST_28612_PI429285431	3.7604384	P	3.6796043	P	1.05762933653111	0	lncRNA	30296-1_{1..2134}	n325978|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047861|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047861|-0.5954180|-0.2991429	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325978|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047861|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047861|-0.5954180|-0.2991429	chr10	 47128239	 47130372	+	NA	NA	NA	NA	ANXA8L1	NA	chr10:47157989-47174040	inner
LNCA_21_P0005628	0.9197503	A	0.91944116	A	1.00021430247889	0	lncRNA	XR_108886	XR_108886	XR_108886	NA	Hs.729928	LOC100507056	uncharacterized LOC100507056	NA	THC2606042	NA	"PREDICTED: Homo sapiens hypothetical LOC100507056 (LOC100507056), miscRNA [XR_108886]"	chr8:128221174-128221115	hs|8q24.21	Agilent_HUMAN_G3V2	XR_108886	XR_108886	chr8	128221115	128221174	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28413_PI429285431	1.1277589	A	0.9125538	A	1.16086893698986	0	lncRNA	30072-1_{1..411}	n325735|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044839|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044839|-1.0866500|-0.3395638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325735|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044839|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044839|-1.0866500|-0.3395638	chr13	 47297465	 47297875	-	NA	NA	NA	NA	LRCH1	"hg19_refFlat_LRCH1:range=chr13:47127532-473159835'pad=0,hg19_refFlat_LRCH1:range=chr13:47127532-473159835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_LRCH1:range=chr13:47127532-473247855'pad=0,hg19_refFlat_LRCH1:range=chr13:47127532-473247855'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40chr13:47287465-47318092"	NA	inner
CUST_49751_PI429285431	2.1298935	A	1.2378659	A	1.85578245532136	0	lncRNA	53520-1_{1..2144}	hg19_lincRNAsTranscripts_TCONS_l2_00026545 range=chr7:45766018-45808566 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026545 range=chr7:45766018-45808566 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 45766018	 45768161	-	NA	NA	NA	NA	ADCY1	NA	chr7:45756018-45762715	inter
CUST_7931_PI429285431	4.8021507	P	5.199721	P	0.759135697850884	0	lncRNA	9543-1_{1..2117}	lnc-AP4B1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AP4B1-1:3	chr1	114471325	114473441	-	lnc-AP4B1-1	lnc-AP4B1-1:3	ENSG00000235527	RP5-1073O3.7	HIPK1	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-20.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80chr1:114471996-114481880"	NA	inter
CUST_1386_PI429285431	0.9051861	A	0.912182	A	0.995162549971939	0	lncRNA	1375-1_{1..554}	"transcript_id ""ENST00000461186.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000461186.1"" | genecode_v17"	chr3	 78136555	 78137108	+	ENSG00000240573.1	ENST00000461186.1	RP11-354H21.2	RP11-354H21.2-001	NA	NA	NA	inter
CUST_25927_PI429285431	8.071945	P	7.968954	P	1.07399777165248	0	lncRNA	27446-1_{1..387}	lnc-SP140-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SP140-1:2	chr2	231078674	231079060	+	lnc-SP140-1	lnc-SP140-1:2	ENSG00000243565.1	AC009950.1	SP110	NA	chr2:231068674-231088874	inner
CUST_7462_PI429285431	0.90818423	A	1.8877044	A	0.507148385755801	0	lncRNA	9105-1_{1..2886}	lnc-ROBO3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ROBO3-2:1	chr11	124702782	124705667	+	lnc-ROBO3-2	lnc-ROBO3-2:1	ENSG00000245498	RP11-677M14.7	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40"	NA	inter
CUST_18994_PI429285431	0.9107387	A	0.92002726	A	0.993582342521144	0	lncRNA	20685-1_{1..375}	lnc-ZNF674-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ZNF674-3:1	chrX	 45710784	 45711158	-	lnc-ZNF674-3	lnc-ZNF674-3:1	ENSG00000231566	RP5-1158E12.3	NA	NA	NA	inter
CUST_14865_PI429285431	5.1981244	P	5.2716184	P	0.950333637297025	0	lncRNA	16529-1_{1..456}	lnc-C14orf49-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf49-2:1	chr14	 95857204	 95857659	-	lnc-C14orf49-2	lnc-C14orf49-2:1	XLOC_011111	linc-CLMN-2	NA	NA	NA	inter
CUST_292_PI429285431	0.9159406	A	0.92331797	A	0.994899448996054	0	lncRNA	284-1_{1..580}	"transcript_id ""ENST00000458146.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458146.1"" | genecode_v17"	chr1	 80839049	 80839628	-	ENSG00000225598.1	ENST00000458146.1	RP11-339D23.1	RP11-339D23.1-001	NA	NA	NA	inter
CUST_45752_PI429285431	7.426337	P	7.3438153	P	1.05886722780178	0	lncRNA	50101-1_{1..3000}	"gi|157787204|ref|NR_003945.1| Homo sapiens GTPase, very large interferon inducible pseudogene 1 (GVINP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|157787204|ref|NR_003945.1| Homo sapiens GTPase, very large interferon inducible pseudogene 1 (GVINP1), non-coding RNA"	Chr11	  6734370	  6737369	-	387751	NR_003945.1	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90"	NA	inter
CUST_33106_PI429285431	8.603437	P	8.760908	P	0.896595398293758	0	lncRNA	34707-1_{1..3000}	n339796|AK127815|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2243|NULL|0.1464810|-0.1903891	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339796|AK127815|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2243|NULL|0.1464810|-0.1903891	chr18	 12279425	 12282424	+	NA	NA	NA	NA	CIDEA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40chr18:12269425-12277594"	NA	inter
CUST_21508_PI429285431	0.8938511	A	0.90280837	A	0.993810527744784	0	lncRNA	23126-1_{1..2633}	lnc-NUF2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUF2-3:1	chr1	163180583	163183215	+	lnc-NUF2-3	lnc-NUF2-3:1	ENSG00000232892.1	RP11-267N12.1	RGS5	NA	chr1:163170583-163172963	inner
CUST_16946_PI429285431	0.9039126	A	0.91070825	A	0.995300690830552	0	lncRNA	18659-1_{1..570}	lnc-ACBD5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACBD5-2:1	chr10	 27596292	 27596861	-	lnc-ACBD5-2	lnc-ACBD5-2:1	XLOC_008759	linc-ACBD5-3	NA	NA	NA	inter
CUST_30656_PI429285431	5.0273004	P	5.34918	P	0.800026891727525	0	lncRNA	32438-1_{1..242}	n336082|X85360|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324162|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324162|-1.0889200|-0.1569844	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336082|X85360|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324162|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324162|-1.0889200|-0.1569844	chr21	 39805478	 39805719	+	NA	NA	NA	NA	ERG	NA	chr21:39795478-39815720	inner
CUST_2938_PI429285431	0.8963744	A	0.90030175	A	0.997281470332898	0	lncRNA	2919-1_{1..733}	"transcript_id ""ENST00000435996.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435996.1"" | genecode_v17"	chr7	135777705	135778437	+	ENSG00000232053.2	ENST00000435996.1	AC009784.3	AC009784.3-002	NA	NA	NA	inter
LNCA_21_P0008220	8.02364	P	8.00075	P	1.01599267447004	0	lncRNA	TCONS_00022121	NA	NA	NA	NA	XLOC_010730	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010730), lincRNA [TCONS_00022121]"	chr13:112843726-112843667	hs|13q34	Agilent_HUMAN_G3V2	TCONS_00022121	TCONS_00022121	chr13	112843667	112843726	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16335_PI429285431	6.776769	P	6.90541	P	0.914692673159232	0	lncRNA	18036-1_{1..473}	lnc-PMFBP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PMFBP1-2:1	chr16	 72283062	 72283534	-	lnc-PMFBP1-2	lnc-PMFBP1-2:1	XLOC_012002	linc-PMFBP1-3	NA	NA	NA	inter
CUST_7983_PI429285431	6.0434217	P	6.1835465	P	0.907440653978472	0	lncRNA	9594-1_{1..1693}	lnc-AC008073.6.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC008073.6.1-1:1	chr2	 24284274	 24285966	+	lnc-AC008073.6.1-1	lnc-AC008073.6.1-1:1	ENSG00000248732	ENST00000513229	SF3B14	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40chr2:24290454-24294864"	NA	inner
CUST_9488_PI429285431	1.1201801	A	0.8901636	A	1.17284836293802	0	lncRNA	10995-1_{1..353}	lnc-INSIG2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INSIG2-1:3	chr2	118815208	118815560	+	lnc-INSIG2-1	lnc-INSIG2-1:3	XLOC_001637	linc-INSIG2-1	NA	NA	NA	inter
LNCA_21_P0008998	1.5103787	A	3.5475373	P	0.243643121796474	0	lncRNA	XR_109344	XR_109344	XR_109344	NA	NA	LOC100506268	uncharacterized LOC100506268	NA	THC2651395	NA	"PREDICTED: Homo sapiens hypothetical LOC100506268 (LOC100506268), miscRNA [XR_109344]"	chr16:89565631-89565690	hs|16q24.3	Agilent_HUMAN_G3V2	XR_109344	XR_109344	chr16	 89565631	 89565690	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51203_PI429285431	5.6584363	P	5.8257957	P	0.890471041412843	0	lncRNA	54821-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00008469 range=chr15:28834619-28930405 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008469 range=chr15:28834619-28930405 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28837619	 28840618	+	NA	NA	NA	NA	NA	"hg19_refFlat_FRMD6:range=chr14:52156555-521947475'pad=0,hg19_refFlat_FRMD6:range=chr14:52156555-521947475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_2620_PI429285431	0.9018018	A	0.90197265	A	0.99988158281607	0	lncRNA	2607-1_{1..2629}	"transcript_id ""ENST00000426074.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426074.2"" | genecode_v17"	chr6	123391444	123394072	+	ENSG00000225504.3	ENST00000426074.2	RP11-160A10.2	RP11-160A10.2-001	CLVS2	NA	chr6:123381444-123385063	inter
CUST_26547_PI429285431	7.014909	P	7.305744	P	0.817428811890951	0	lncRNA	28052-1_{1..3000}	lnc-ATL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ATL3-1:1	chr11	 63535956	 63538955	-	lnc-ATL3-1	lnc-ATL3-1:1	ENSG00000188070.7	C11orf95	RTN3	NA	chr11:63525956-63527363	inner
CUST_7395_PI429285431	1.619614	A	0.97526187	A	1.56303721665776	0	lncRNA	9041-1_{1..1273}	lnc-WDR54-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR54-1:5	chr2	 74619116	 74620388	+	lnc-WDR54-1	lnc-WDR54-1:5	ENSG00000237737	AC005041.9	DCTN1	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80chr2:74609116-74619214"	NA	inner
CUST_18050_PI429285431	1.2391052	A	0.90041816	A	1.2646051851562	0	lncRNA	19785-1_{1..300}	lnc-PDE2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE2A-1:1	chr11	 72245991	 72246290	-	lnc-PDE2A-1	lnc-PDE2A-1:1	XLOC_009497	linc-CLPB	NA	NA	NA	inter
CUST_46214_PI429285431	3.1560867	P	3.8202705	P	0.631045615438124	0	lncRNA	50456-1_{1..1023}	"gi|389616159|ref|NR_051983.1| Homo sapiens long intergenic non-protein coding RNA 462 (LINC00462), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|389616159|ref|NR_051983.1| Homo sapiens long intergenic non-protein coding RNA 462 (LINC00462), non-coding RNA"	Chr13	 49151110	 49152132	-	100129597	NR_051983.1	NA	NA	NA	NA	NA	inter
CUST_35338_PI429285431	2.1543407	A	3.382812	P	0.426769417273887	0	lncRNA	36748-1_{1..3000}	n342380|BC040221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4872|NULL|3.4783000|-0.2534584	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342380|BC040221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4872|NULL|3.4783000|-0.2534584	chr2	   194492	   197491	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40695_PI429285431	0.92057526	A	0.92523634	A	0.996774399004584	0	lncRNA	41432-1_{1..1498}	n410255|NR_037173_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037173_8||-1.1069800|-0.3222067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410255|NR_037173_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037173_8||-1.1069800|-0.3222067	chr6	  4269058	  4270555	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13130_PI429285431	1.1224837	A	0.8900552	A	1.1748108541618	0	lncRNA	14758-1_{1..414}	lnc-VPS33B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VPS33B-2:1	chr15	 92347128	 92347541	-	lnc-VPS33B-2	lnc-VPS33B-2:1	XLOC_011578	linc-VPS33B-5	NA	NA	NA	inter
CUST_1979_PI429285431	0.894574	A	1.121342	A	0.854547149692884	0	lncRNA	1970-1_{1..511}	"transcript_id ""ENST00000509968.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509968.1"" | genecode_v17"	chr4	174818403	174818913	+	ENSG00000250708.1	ENST00000509968.1	RP11-161D15.1	RP11-161D15.1-002	NA	NA	NA	inter
CUST_41490_PI429285431	0.90867126	A	0.8981994	A	1.00728494729095	0	lncRNA	42697-1_{1..96}	ENST00000362239 ncrna:miRNA chromosome:GRCh37:14:101489662:101489757:1 gene:ENSG00000199109 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362239 ncrna:miRNA chromosome:GRCh37:14:101489662:101489757:1 gene:ENSG00000199109 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101489662	101489757	+	ENSG00000199109	ENST00000362239	NA	NA	NA	NA	NA	inter
CUST_5335_PI429285431	9.604853	P	9.419322	P	1.13723546841298	0	lncRNA	5273-1_{1..475}	"transcript_id ""ENST00000602330.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602330.1"" | genecode_v17"	chr15	 95398815	 95399289	-	ENSG00000270017.1	ENST00000602330.1	CTD-2576F9.2	CTD-2576F9.2-001	NA	"hg19_refFlat_GLTSCR2:range=chr19:48248817-482602625'pad=0,hg19_refFlat_GLTSCR2:range=chr19:48248817-482602625'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00"	NA	inter
CUST_7169_PI429285431	5.8152027	P	6.178153	P	0.777572822349919	0	lncRNA	7303-1_{1..361}	"transcript_id ""ENST00000365474.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000365474.1"" | genecode_v17"	chr2	 56178789	 56179149	-	ENSG00000202344.1	ENST00000365474.1	RN7SKP208	RN7SKP208-201	NA	NA	NA	inter
CUST_13800_PI429285431	1.7629213	A	2.286056	A	0.695858222739778	0	lncRNA	15442-2_{3001..5810}	lnc-COIL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COIL-1:1	chr17	 55126510	 55129319	-	lnc-COIL-1	lnc-COIL-1:1	XLOC_012529	linc-COIL-4	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RNF126:range=chr19:648128-6631215'pad=0,hg19_refFlat_RNF126:range=chr19:648128-6631215'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.30"	NA	inter
CUST_1249_PI429285431	0.9001224	A	0.8948879	A	1.00363486908851	0	lncRNA	1241-1_{1..2818}	"transcript_id ""ENST00000432733.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000432733.1"" | genecode_v17"	chr2	219841006	219843823	+	ENSG00000236445.2	ENST00000432733.1	LINC00608	LINC00608-002	FEV	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40chr2:219845809-219850379"	NA	inter
CUST_34836_PI429285431	6.927702	P	7.22094	P	0.816068409032716	0	lncRNA	36266-1_{1..3000}	n341742|AK128504|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4215|NULL|-1.0250000|-0.3844431	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341742|AK128504|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4215|NULL|-1.0250000|-0.3844431	chr9	104181298	104184297	+	NA	NA	NA	NA	ZNF189	"hg19_refFlat_ALDOB:range=chr9:104184091-1041931695'pad=0,hg19_refFlat_ALDOB:range=chr9:104184091-1041931695'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60chr9:104171298-104172942"	NA	inner
CUST_25956_PI429285431	0.90570384	A	1.2449625	A	0.790447385022139	0	lncRNA	27476-1_{1..702}	lnc-C15orf48-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C15orf48-1:3	chr15	 45805896	 45806597	+	lnc-C15orf48-1	lnc-C15orf48-1:3	ENSG00000259354.1	RP11-519G16.3	SLC30A4	NA	chr15:45795896-45815002	inter
CUST_9723_PI429285431	1.3515046	A	0.9235884	A	1.34528906414994	0	lncRNA	11239-1_{1..1000}	lnc-ANKRD56-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD56-1:1	chr4	 77831131	 77832130	-	lnc-ANKRD56-1	lnc-ANKRD56-1:1	XLOC_003991	linc-ANKRD56-1	NA	NA	NA	inter
CUST_4739_PI429285431	0.8978972	A	0.9005645	A	0.998152876561418	0	lncRNA	4683-1_{1..605}	"transcript_id ""ENST00000258817.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000258817.2"" | genecode_v17"	chr14	 21387500	 21388104	+	ENSG00000136315.3	ENST00000258817.2	RP11-84C10.2	RP11-84C10.2-201	NA	NA	NA	inter
CUST_20800_PI429285431	5.943226	P	5.531469	P	1.33030495260717	0	lncRNA	22431-1_{1..715}	lnc-CHAF1B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHAF1B-2:1	chr21	 37904269	 37904983	+	lnc-CHAF1B-2	lnc-CHAF1B-2:1	ENSG00000233818.1	AP000695.4	CLDN14	NA	chr21:37894269-37914706	inner
CUST_10911_PI429285431	3.0627081	P	3.6724865	P	0.655297348799393	0	lncRNA	12455-1_{1..1614}	lnc-ZNF705D-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF705D-3:1	chr8	 12299097	 12300710	+	lnc-ZNF705D-3	lnc-ZNF705D-3:1	XLOC_006721	linc-C8orf79-2	LOC100127885	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-59.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00chr8:12295164-12309351"	NA	inter
CUST_11057_PI429285431	1.7389231	M	1.6403778	A	1.07069331528781	0	lncRNA	12607-1_{1..1837}	lnc-FAM20C-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM20C-4:1	chr7	   391006	   392842	+	lnc-FAM20C-4	lnc-FAM20C-4:1	XLOC_005955	linc-HEATR2-5	NA	NA	NA	inter
CUST_47574_PI429285431	1.2652432	A	0.9140773	A	1.27559106743822	0	lncRNA	51578-2_{3001..3133}	"gi|84872070|ref|NR_002784.1| Homo sapiens SMEK homolog 3, suppressor of mek1 (Dictyostelium) pseudogene (SMEK3P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|84872070|ref|NR_002784.1| Homo sapiens SMEK homolog 3, suppressor of mek1 (Dictyostelium) pseudogene (SMEK3P), non-coding RNA"	NA	NA	NA	NA	NA	NR_002784.1	NA	NA	NA	NA	NA	Unknown
CUST_42634_PI429285431	7.7083244	P	7.618805	P	1.06401567155432	0	lncRNA	45508-1_{1..134}	ENST00000384515 ncrna:snoRNA chromosome:GRCh37:8:8819085:8819218:1 gene:ENSG00000207244 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384515 ncrna:snoRNA chromosome:GRCh37:8:8819085:8819218:1 gene:ENSG00000207244 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	  8819085	  8819218	+	ENSG00000207244	ENST00000384515	NA	NA	NA	NA	NA	inter
CUST_36950_PI429285431	2.6039367	A	1.1616733	A	2.71746866556203	0	lncRNA	38102-1_{1..2390}	n345418|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_967|NULL|-1.3069900|-0.3141564	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345418|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_967|NULL|-1.3069900|-0.3141564	chr1	 36530868	 36533257	+	NA	NA	NA	NA	EIF2C3	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-21.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10chr1:36520868-36522063"	NA	inter
CUST_11965_PI429285431	2.0486634	A	0.8856037	A	2.23931844037385	0	lncRNA	13543-1_{1..295}	lnc-CTR9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTR9-1:1	chr11	 10813642	 10813936	+	lnc-CTR9-1	lnc-CTR9-1:1	XLOC_009062	linc-USP47-6	EIF4G2	NA	chr11:10818593-10823847	inter
CUST_30944_PI429285431	1.1248045	A	1.4184343	A	0.815846815292237	0	lncRNA	32732-1_{1..269}	n337043|DQ123826|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341910_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341910_05|-1.1864600|-0.1951467	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337043|DQ123826|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341910_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341910_05|-1.1864600|-0.1951467	chr6	  2883634	  2883902	+	NA	NA	NA	NA	SERPINB9	NA	chr6:2887504-2894513	inter
CUST_32221_PI429285431	1.2202774	A	1.3255066	A	0.929657236854648	0	lncRNA	33914-1_{1..3000}	n338795|BC043442|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1218|NULL|-1.2559600|-0.3376849	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n338795|BC043442|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1218|NULL|-1.2559600|-0.3376849	chr13	 90712500	 90715499	-	NA	NA	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_6639_PI429285431	1.1086884	A	1.2011749	A	0.937904866543489	0	lncRNA	6585-1_{1..349}	"transcript_id ""ENST00000424931.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424931.1"" | genecode_v17"	chr20	 10154168	 10154516	+	ENSG00000230506.1	ENST00000424931.1	RP11-416N4.4	RP11-416N4.4-001	NA	NA	NA	inter
CUST_4536_PI429285431	6.5750966	P	6.6750555	P	0.933059572485034	0	lncRNA	4484-1_{1..1561}	"transcript_id ""ENST00000508145.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508145.2"" | genecode_v17"	chr12	132147141	132148701	+	ENSG00000249926.2	ENST00000508145.2	RP11-495K9.6	RP11-495K9.6-001	SFSWAP	NA	chr12:132152025-132159249	inter
CUST_34329_PI429285431	0.8925166	A	1.8680756	A	0.508542763176818	0	lncRNA	35822-1_{1..1630}	n341192|BC013942|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3658|NULL|-0.9332800|-0.3337714	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341192|BC013942|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3658|NULL|-0.9332800|-0.3337714	chr7	 17472701	 17474330	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46003_PI429285431	0.89819986	A	0.89755934	A	1.00044407320342	0	lncRNA	50288-2_{3001..3600}	"gi|343790992|ref|NR_045013.1| Homo sapiens LIM domain only 3 (rhombotin-like 2) (LMO3), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|343790992|ref|NR_045013.1| Homo sapiens LIM domain only 3 (rhombotin-like 2) (LMO3), transcript variant 9, non-coding RNA"	Chr12	 16704306	 16704905	-	55885	NR_045013.1	NA	NA	NA	NA	NA	inter
CUST_12589_PI429285431	2.5591164	A	2.582112	A	0.98418702364965	0	lncRNA	14202-1_{1..805}	lnc-TSEN15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSEN15-1:1	chr1	184090921	184091725	+	lnc-TSEN15-1	lnc-TSEN15-1:1	XLOC_000490	linc-C1orf21-2	NA	NA	NA	inter
CUST_24061_PI429285431	3.0510263	A	2.889264	A	1.11865277540647	0	lncRNA	25611-1_{1..445}	lnc-WDR82-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR82-1:2	chr3	 52332873	 52333317	-	lnc-WDR82-1	lnc-WDR82-1:2	ENSG00000242797.1	GLYCTK-AS1	GLYCTK	"hg19_refFlat_GLYCTK:range=chr3:52324359-523271425'pad=0,hg19_refFlat_GLYCTK:range=chr3:52324359-523271425'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.20chr3:52322873-52329272"	NA	inter
CUST_31428_PI429285431	3.4812932	P	3.5850263	P	0.93062180772732	0	lncRNA	33199-1_{1..1980}	n337895|BC021806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|278|NULL|-0.3894400|-0.1612240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337895|BC021806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|278|NULL|-0.3894400|-0.1612240	chrX	153625218	153627197	-	NA	NA	NA	NA	DNASE1L1	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chrX:153629579-153637157"	NA	inner
CUST_21951_PI429285431	7.022804	P	6.945863	P	1.05477918027033	0	lncRNA	23559-1_{1..674}	lnc-PBX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PBX1-2:1	chr1	165187830	165188503	+	lnc-PBX1-2	lnc-PBX1-2:1	ENSG00000238022.1	RP11-38C18.3	LMX1A	NA	chr1:165177830-165198341	inner
CUST_4150_PI429285431	1.3604952	A	1.5051736	A	0.904581000786641	0	lncRNA	4108-1_{1..1405}	"transcript_id ""ENST00000538430.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000538430.1"" | genecode_v17"	chr12	  5497755	  5499159	+	ENSG00000255983.1	ENST00000538430.1	RP11-1038A11.1	RP11-1038A11.1-001	NA	NA	NA	inter
LNCA_21_P0013100	6.103292	P	6.517094	P	0.75064256223165	0	lncRNA	TCONS_l2_00024933	NA	NA	NA	NA	XLOC_l2_013131	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013131), lincRNA [TCONS_l2_00024933]"	chr6:137865379-137865118	hs|6q23.3	Agilent_HUMAN_G3V2	TCONS_l2_00024933	TCONS_l2_00024933	chr6	137865118	137865379	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51387_PI429285431	11.580839	P	12.2862215	P	0.613279868916667	0	lncRNA	54975-4_{9001..10807}	hg19_lincRNAsTranscripts_TCONS_l2_00009372 range=chr15:101087970-101098955 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009372 range=chr15:101087970-101098955 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	101096970	101098776	-	NA	NA	NA	NA	CERS3	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr15:101077970-101084925"	NA	inter
CUST_18858_PI429285431	1.3338621	A	2.0445523	A	0.611027747013104	0	lncRNA	20550-1_{1..1684}	lnc-APOD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-APOD-1:1	chr3	195384176	195385859	-	lnc-APOD-1	lnc-APOD-1:1	ENSG00000229178	AC069513.4	NA	NA	NA	inter
CUST_29748_PI429285431	9.581127	P	9.976052	P	0.760528912478196	0	lncRNA	31510-1_{1..534}	n333429|BC014266|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000088342|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000088342|1.4310200|-0.1011220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333429|BC014266|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000088342|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000088342|1.4310200|-0.1011220	chr2	220370737	220371270	+	NA	NA	NA	NA	ACCN4	NA	chr2:220378892-220381729	inner
CUST_40553_PI429285431	1.1150836	A	1.140116	A	0.982798526638906	0	lncRNA	41311-1_{1..1157}	n409703|NR_034104|lncRNA|Homosapiens||RefGeneNoncode|NR_034104||1.6989800|-0.2345817	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n409703|NR_034104|lncRNA|Homosapiens||RefGeneNoncode|NR_034104||1.6989800|-0.2345817	chr20	 43285091	 43286247	-	NA	NA	NA	NA	ADA	NA	chr20:43275091-43280376	inter
CUST_33403_PI429285431	2.254474	A	2.54011	A	0.82037987150116	0	lncRNA	34982-1_{1..802}	n340125|Y11610|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2584|NULL|-1.0656200|-0.2605201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340125|Y11610|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2584|NULL|-1.0656200|-0.2605201	chr10	102866568	102867369	-	NA	NA	NA	NA	TLX1NB	NA	chr10:102856568-102877461	inner
CUST_34930_PI429285431	6.322612	P	6.754596	P	0.741241725489627	0	lncRNA	36350-1_{1..2739}	n341849|AK098234|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4329|NULL|2.1563100|-0.3196405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341849|AK098234|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4329|NULL|2.1563100|-0.3196405	chr6	 42751233	 42753971	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_437_PI429285431	0.9276942	A	0.90979856	A	1.01248156498473	0	lncRNA	429-1_{1..761}	"transcript_id ""ENST00000594189.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594189.1"" | genecode_v17"	chr1	147635156	147635916	+	ENSG00000232265.2	ENST00000594189.1	XXyac-YX155B6.5	XXyac-YX155B6.5-007	NA	NA	NA	inter
CUST_13444_PI429285431	8.382506	P	8.306695	P	1.0539533412815	0	lncRNA	15082-1_{1..1015}	lnc-WAPAL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WAPAL-1:1	chr10	 88162847	 88163861	-	lnc-WAPAL-1	lnc-WAPAL-1:1	XLOC_008883	linc-GRID1	NA	NA	NA	inter
CUST_26650_PI429285431	0.92061156	A	1.6182015	A	0.616601395633816	0	lncRNA	28150-1_{1..268}	lnc-ENOSF1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ENOSF1-2:1	chr18	   657222	   657489	-	lnc-ENOSF1-2	lnc-ENOSF1-2:1	ENSG00000263727.1	RP11-806L2.5	C18orf56	NA	chr18:649620-658340	inner
CUST_29604_PI429285431	0.90602875	A	0.9475394	A	0.971637010739955	0	lncRNA	31365-1_{1..368}	n333129|AF345624|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078110|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078110|-0.9909120|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333129|AF345624|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078110|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078110|-0.9909120|-1.0000000	chr7	 87230119	 87230486	-	NA	NA	NA	NA	ABCB1	NA	chr7:87220119-87342639	inner
CUST_45232_PI429285431	0.9556166	A	0.9534591	A	1.00149658380753	0	lncRNA	49689-1_{1..627}	"gi|397139285|ref|XR_158835.1| PREDICTED: Homo sapiens uncharacterized LOC100996398, transcript variant 1 (LOC100996398), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139285|ref|XR_158835.1| PREDICTED: Homo sapiens uncharacterized LOC100996398, transcript variant 1 (LOC100996398), misc_RNA"	NA	NA	NA	NA	NA	XR_158835.1	NA	NA	NA	NA	NA	Unknown
CUST_11698_PI429285431	3.0148907	A	2.5849888	A	1.34714197114388	0	lncRNA	13276-1_{1..593}	lnc-GPR132-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR132-2:1	chr14	105509257	105509849	-	lnc-GPR132-2	lnc-GPR132-2:1	XLOC_011151	linc-CDCA4-2	GPR132	NA	chr14:105515737-105519821	inter
CUST_19763_PI429285431	0.93098515	A	1.3213167	A	0.762954247566802	0	lncRNA	21421-1_{1..823}	lnc-GANC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GANC-1:1	chr15	 42518978	 42519800	+	lnc-GANC-1	lnc-GANC-1:1	ENSG00000261002.1	RP11-546B15.1	TMEM87A	"hg19_refFlat_TMEM87A:range=chr15:42503906-425655965'pad=0,hg19_refFlat_TMEM87A:range=chr15:42503906-425655965'pad=0 3'pad=0 strand=- repeatMasking=none,-95.40chr15:42508978-42529188"	NA	inner
CUST_34943_PI429285431	8.585815	P	8.007057	P	1.49356290344124	0	lncRNA	36361-1_{1..1225}	n341862|D50682|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4342|NULL|1.9558500|-0.4686057	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341862|D50682|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4342|NULL|1.9558500|-0.4686057	chr12	 24332886	 24334110	-	NA	NA	NA	NA	SOX5	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-19.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20chr12:24322886-24343863"	NA	inner
CUST_18551_PI429285431	1.2327595	A	1.9788283	A	0.59622600234811	0	lncRNA	20262-1_{1..488}	lnc-EFR3B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EFR3B-3:2	chr2	 25258432	 25258919	+	lnc-EFR3B-3	lnc-EFR3B-3:2	ENSG00000224165	AC013267.2	EFR3B	NA	chr2:25264973-25268619	inter
CUST_4469_PI429285431	4.100046	P	4.029635	P	1.05001577317749	0	lncRNA	4418-1_{1..570}	"transcript_id ""ENST00000534849.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534849.1"" | genecode_v17"	chr12	126468248	126468817	+	ENSG00000256276.1	ENST00000534849.1	RP5-916L7.2	RP5-916L7.2-001	NA	NA	NA	inter
CUST_25255_PI429285431	0.9108207	A	0.91045064	A	1.00025653894613	0	lncRNA	26785-1_{1..493}	lnc-RP11-1105G2.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-1105G2.3.1-1:1	chr12	 94670709	 94671201	-	lnc-RP11-1105G2.3.1-1	lnc-RP11-1105G2.3.1-1:1	ENSG00000258172.1	RP11-1105G2.4	PLXNC1	NA	chr12:94660709-94680971	inner
CUST_42960_PI429285431	11.630922	P	11.353495	P	1.21203133692458	0	lncRNA	46093-1_{1..70}	ENST00000386967 ncrna:snoRNA chromosome:GRCh37:19:12817263:12817332:-1 gene:ENSG00000209702 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000386967 ncrna:snoRNA chromosome:GRCh37:19:12817263:12817332:-1 gene:ENSG00000209702 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	 12817263	 12817332	-	ENSG00000209702	ENST00000386967	NA	NA	TNPO2	NA	chr19:12810008-12827332	inner
CUST_34961_PI429285431	0.9127955	A	1.3494322	A	0.738855067123449	0	lncRNA	36378-1_{1..501}	n341881|AF075013|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4361|NULL|-1.4127600|-0.3915775	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341881|AF075013|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4361|NULL|-1.4127600|-0.3915775	chr6	 52990444	 52990944	-	NA	NA	NA	NA	GCM1	NA	chr6:52991759-53000944	inter
CUST_26060_PI429285431	3.326644	P	3.7413507	P	0.750171989157762	0	lncRNA	27573-1_{1..542}	lnc-KIF1C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIF1C-2:1	chr17	  4890107	  4890648	+	lnc-KIF1C-2	lnc-KIF1C-2:1	ENSG00000262678.1	RP5-1050D4.4	INCA1	NA	chr17:4891425-4900619	inner
CUST_44674_PI429285431	2.1966782	A	1.873507	A	1.25107753266889	0	lncRNA	49234-1_{1..716}	"gi|310119707|ref|XR_108674.1| PREDICTED: Homo sapiens B2 RNA (LOC100506431), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119707|ref|XR_108674.1| PREDICTED: Homo sapiens B2 RNA (LOC100506431), misc_RNA"	NA	NA	NA	NA	NA	XR_108674.1	NA	NA	NA	NA	NA	Unknown
CUST_29434_PI429285431	4.087036	P	3.8579032	P	1.17213017322748	0	lncRNA	31190-1_{1..445}	n332819|AF059253|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064829_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064829_07|-0.5962970|-0.2791286	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332819|AF059253|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064829_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064829_07|-0.5962970|-0.2791286	chr6	  3318978	  3319422	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3308978-3329627	inner
CUST_39132_PI429285431	10.1281805	P	9.847629	P	1.21465912421409	0	lncRNA	40108-1_{1..573}	n385730|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004coz.1||-1.4258400|-0.3036949	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385730|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004coz.1||-1.4258400|-0.3036949	chrM	    15998	    16570	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007159	0.9007703	A	1.6128277	A	0.61044896813308	0	lncRNA	ENST00000452309	NA	NA	NA	NA	XLOC_009464	NA	ENST00000452309	THC2664965	NA	"BROAD Institute lincRNA (XLOC_009464), lincRNA [TCONS_00019172]"	chr11:64177607-64177548	hs|11q13.1	Agilent_HUMAN_G3V2	ENST00000452309	ENST00000452309	chr11	 64177548	 64177607	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51460_PI429285431	1.7864562	A	1.5056859	A	1.21484335411929	0	lncRNA	55037-1_{1..266}	hg19_lincRNAsTranscripts_TCONS_l2_00010120 range=chr16:33121891-33123194 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010120 range=chr16:33121891-33123194 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 33121891	 33122156	-	NA	NA	NA	NA	LOC653550	NA	chr16:33111891-33133194	inter
CUST_5224_PI429285431	0.9013926	A	0.9095658	A	0.994350786621124	0	lncRNA	5165-1_{1..890}	"transcript_id ""ENST00000558010.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558010.1"" | genecode_v17"	chr15	 69857063	 69857952	-	ENSG00000259457.1	ENST00000558010.1	RP11-279F6.2	RP11-279F6.2-001	NA	NA	NA	inter
CUST_20599_PI429285431	7.495758	P	7.6661777	P	0.888584142108999	0	lncRNA	22238-1_{1..846}	lnc-SCD-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SCD-2:1	chr10	101993710	101994555	+	lnc-SCD-2	lnc-SCD-2:1	ENSG00000227492.1	RP11-316M21.6	CHUK	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CWF19L1:range=chr10:101992984-1020273505'pad=0,hg19_refFlat_CWF19L1:range=chr10:101992984-1020273505'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60chr10:101983710-101989344"	NA	inner
CUST_29334_PI429285431	4.7146425	P	4.8309274	P	0.922560289642743	0	lncRNA	31086-1_{1..888}	n332575|AK311672|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000430538|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000430538|-1.1358300|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332575|AK311672|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000430538|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000430538|-1.1358300|-1.0000000	chr19	 56165497	 56166384	+	NA	NA	NA	NA	CCDC106	NA	chr19:56158954-56164527	inner
CUST_16938_PI429285431	2.407879	A	1.526931	A	1.84158501576183	0	lncRNA	18650-1_{1..1514}	lnc-ETNK2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-ETNK2-1:6	chr1	204010220	204011733	-	lnc-ETNK2-1	lnc-ETNK2-1:6	XLOC_001164	linc-FMOD-1	NA	NA	NA	inter
LNCA_21_P0002045	1.089377	A	0.9227499	A	1.12243126462228	0	lncRNA	ENST00000444871	NA	NA	NA	NA	XLOC_002075	NA	ENST00000444871	THC2637936	NA	"BROAD Institute lincRNA (XLOC_002075), lincRNA [TCONS_00003270]"	chr2:45158375-45158316	hs|2p21	Agilent_HUMAN_G3V2	ENST00000444871	ENST00000444871	chr2	 45158316	 45158375	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00809068	6.05833	P	6.0643964	P	0.995803920191407	0	lncRNA	AK124820	NA	AK124820	NA	Hs.708523	LOC100129936	uncharacterized LOC100129936	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014327), lincRNA [TCONS_00029347]"	chr22:27064593-27064534	hs|22q12.1	Agilent_HUMAN_G3V2	AK124820	AK124820	chr22	 27064534	 27064593	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42474_PI429285431	0.9069142	A	1.3269061	A	0.747428820738945	0	lncRNA	45231-1_{1..87}	ENST00000517195 ncrna:snoRNA chromosome:GRCh37:3:135518536:135518622:-1 gene:ENSG00000253004 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517195 ncrna:snoRNA chromosome:GRCh37:3:135518536:135518622:-1 gene:ENSG00000253004 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	135518536	135518622	-	ENSG00000253004	ENST00000517195	NA	NA	NA	NA	NA	inter
CUST_25272_PI429285431	1.0046985	A	0.9210191	A	1.05971726369456	0	lncRNA	26802-1_{1..1868}	lnc-MTHFR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTHFR-1:1	chr1	 11839180	 11841047	-	lnc-MTHFR-1	lnc-MTHFR-1:1	ENSG00000177553.6	RP11-56N19.5	C1orf167	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30chr1:11829180-11838367"	NA	inter
CUST_20617_PI429285431	4.171188	P	3.9833586	P	1.13904867571668	0	lncRNA	22256-1_{1..1741}	lnc-ZNF512-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF512-1:1	chr2	 27858007	 27859747	+	lnc-ZNF512-1	lnc-ZNF512-1:1	ENSG00000259080.1	RP11-158I13.2	GPN1	NA	chr2:27851515-27868041	inter
CUST_26480_PI429285431	4.712111	P	4.60602	P	1.07630801227036	0	lncRNA	27988-1_{1..430}	lnc-STRN3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STRN3-2:1	chr14	 31291701	 31292130	-	lnc-STRN3-2	lnc-STRN3-2:1	ENSG00000258558.1	RP11-159L20.2	COCH	NA	chr14:31290597-31301908	inter
CUST_6580_PI429285431	8.632681	P	8.386017	P	1.1864604418619	0	lncRNA	6528-1_{1..555}	"transcript_id ""ENST00000422045.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422045.1"" | genecode_v17"	chr19	 54368017	 54368571	+	ENSG00000232324.1	ENST00000422045.1	AC008440.10	AC008440.10-001	MYADM	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr19:54369611-54379394"	NA	inter
LNCA_21_P0003258	0.9196664	A	0.9247252	A	0.99649964761003	0	lncRNA	TCONS_00007028	NA	NA	NA	NA	XLOC_002900	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002900), lincRNA [TCONS_00007028]"	chr3:164333958-164334017	hs|3q26.1	Agilent_HUMAN_G3V2	TCONS_00007028	TCONS_00007028	chr3	164333958	164334017	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011185	3.5823169	P	3.4370606	P	1.10592710782612	0	lncRNA	TCONS_l2_00007207	NA	NA	NA	NA	XLOC_l2_003992	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003992), lincRNA [TCONS_l2_00007207]"	chr13:52764404-52764345	hs|13q14.3	Agilent_HUMAN_G3V2	TCONS_l2_00007207	TCONS_l2_00007207	chr13	 52764345	 52764404	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29493_PI429285431	5.4771156	P	5.924054	P	0.73359799448406	0	lncRNA	31251-1_{1..566}	n332920|AF086436|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067315|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067315|-1.2041600|-0.3352162	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332920|AF086436|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067315|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067315|-1.2041600|-0.3352162	chr19	 51834787	 51835352	-	NA	NA	NA	NA	VSIG10L	NA	chr19:51834795-51845353	inner
CUST_12115_PI429285431	1.1372715	A	1.0980935	A	1.02752820819234	0	lncRNA	13712-1_{1..3000}	lnc-SOX11-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOX11-3:4	chr2	  6123097	  6126096	+	lnc-SOX11-3	lnc-SOX11-3:4	XLOC_001327	linc-RSAD2-2	NA	NA	NA	inter
CUST_8645_PI429285431	0.9257247	A	1.0830857	A	0.896663762882963	0	lncRNA	10198-1_{1..755}	lnc-NEDD1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NEDD1-4:4	chr12	 97887653	 97888407	+	lnc-NEDD1-4	lnc-NEDD1-4:4	ENSG00000255794	RMST	NA	NA	NA	inter
CUST_30902_PI429285431	5.9095035	P	6.324537	P	0.750002079069522	0	lncRNA	32690-1_{1..855}	n336935|BC092434|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000334411|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000334411|4.8040700|-0.3315284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336935|BC092434|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000334411|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000334411|4.8040700|-0.3315284	chr13	 49822069	 49822923	+	NA	NA	NA	NA	CDADC1	NA	chr13:49812069-49851950	inner
CUST_38793_PI429285431	0.9289624	A	1.3565167	A	0.743521156965745	0	lncRNA	39788-1_{1..754}	n384485|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hul.1||-1.2136200|-0.2255898	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n384485|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hul.1||-1.2136200|-0.2255898	chr4	100010010	100010763	+	NA	NA	NA	NA	ADH5	NA	chr4:100000010-100009931	inter
CUST_50951_PI429285431	1.1648439	A	0.9248695	A	1.18097170541108	0	lncRNA	54592-1_{1..401}	hg19_lincRNAsTranscripts_TCONS_l2_00006295 range=chr12:64078484-64082180 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006295 range=chr12:64078484-64082180 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 64078484	 64078884	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46716_PI429285431	2.7587376	A	2.5513852	A	1.15456740355929	0	lncRNA	50873-1_{1..3000}	"gi|254281195|ref|NR_028076.1| Homo sapiens scavenger receptor class F, member 1 (SCARF1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254281195|ref|NR_028076.1| Homo sapiens scavenger receptor class F, member 1 (SCARF1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_028076.1	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-58.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40"	NA	Unknown
CUST_44650_PI429285431	0.90200365	A	1.350927	A	0.732589358547561	0	lncRNA	49213-2_{3001..5463}	"gi|372620345|ref|NR_046000.1| Homo sapiens interferon regulatory factor 4 (IRF4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372620345|ref|NR_046000.1| Homo sapiens interferon regulatory factor 4 (IRF4), transcript variant 4, non-coding RNA"	Chr6	   394739	   397201	+	3662	NR_046000.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001250	6.8363757	P	7.230616	P	0.760889943549088	0	lncRNA	TCONS_00000796	NA	NA	NA	NA	XLOC_000010	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000010), lincRNA [TCONS_00000796]"	chr1:840586-840645	hs|1p36.33	Agilent_HUMAN_G3V2	TCONS_00000796	TCONS_00000796	chr1	   840586	   840645	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44916_PI429285431	7.615401	P	7.5395064	P	1.05401441659524	0	lncRNA	49432-1_{1..1405}	"gi|134254460|ref|NR_003500.1| Homo sapiens retinitis pigmentosa 9 pseudogene (RP9P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|134254460|ref|NR_003500.1| Homo sapiens retinitis pigmentosa 9 pseudogene (RP9P), non-coding RNA"	NA	NA	NA	NA	NA	NR_003500.1	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-54.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80"	NA	Unknown
CUST_16707_PI429285431	2.2035608	A	1.6148586	A	1.50389328685203	0	lncRNA	18413-1_{1..673}	lnc-ZNF804B-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ZNF804B-2:3	chr7	 89123427	 89124099	+	lnc-ZNF804B-2	lnc-ZNF804B-2:3	XLOC_006163	linc-STEAP1-3	NA	NA	NA	inter
CUST_35410_PI429285431	1.0154271	A	1.0253305	A	0.993158993168119	0	lncRNA	36821-1_{1..3000}	n342472|U37028|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4966|NULL|15.3925000|-0.0586384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342472|U37028|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4966|NULL|15.3925000|-0.0586384	chr16	 31404681	 31407680	+	NA	NA	NA	NA	ITGAD	NA	chr16:31404633-31437826	inner
CUST_185_PI429285431	0.9082598	A	1.011646	A	0.930845605211936	0	lncRNA	175-1_{1..210}	"transcript_id ""ENST00000411815.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411815.2"" | genecode_v17"	chr1	 24233601	 24233810	-	ENSG00000232557.2	ENST00000411815.2	RP11-4M23.3	RP11-4M23.3-001	CNR2	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-27.70chr1:24223601-24239817"	NA	inner
CUST_18038_PI429285431	5.3696995	P	5.3653536	P	1.00301689001246	0	lncRNA	19774-1_{1..347}	lnc-SGCZ-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SGCZ-2:1	chr8	 13691831	 13692177	-	lnc-SGCZ-2	lnc-SGCZ-2:1	XLOC_007011	linc-DLC1	NA	NA	NA	inter
CUST_15420_PI429285431	0.90560144	A	1.2913219	A	0.765396675612679	0	lncRNA	17106-1_{1..282}	lnc-C14orf23-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf23-2:4	chr14	 29532087	 29532368	+	lnc-C14orf23-2	lnc-C14orf23-2:4	XLOC_010782	linc-G2E3-4	NA	NA	NA	inter
CUST_42379_PI429285431	8.720854	P	8.850948	P	0.91377191071793	0	lncRNA	45063-1_{1..139}	ENST00000384372 ncrna:snoRNA chromosome:GRCh37:X:132286782:132286920:1 gene:ENSG00000207100 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384372 ncrna:snoRNA chromosome:GRCh37:X:132286782:132286920:1 gene:ENSG00000207100 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	132286782	132286920	+	ENSG00000207100	ENST00000384372	NA	NA	NA	NA	NA	inter
CUST_36865_PI429285431	6.3889995	P	5.877224	P	1.42580382856796	0	lncRNA	38024-2_{3001..5349}	n345334|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_883|NULL|-1.3778100|-0.2938303	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345334|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_883|NULL|-1.3778100|-0.2938303	chr16	 74350203	 74352551	-	NA	NA	NA	NA	PSMD7	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.51;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.71;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50chr16:74337203-74340186"	NA	inter
CUST_9613_PI429285431	1.3004484	A	1.4073555	A	0.928576644563897	0	lncRNA	11129-1_{1..334}	lnc-KDM6A-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KDM6A-2:4	chrX	 45461542	 45461875	+	lnc-KDM6A-2	lnc-KDM6A-2:4	XLOC_007966	linc-ZNF673-4	NA	NA	NA	inter
CUST_34633_PI429285431	4.4535275	P	4.6110005	P	0.896594155349475	0	lncRNA	36086-1_{1..1939}	n341526|BC039348|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3996|NULL|-0.9395180|-0.3740662	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341526|BC039348|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3996|NULL|-0.9395180|-0.3740662	chr8	 70290501	 70292439	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27866_PI429285431	0.91346556	A	1.9649438	A	0.48247355042574	0	lncRNA	29459-1_{1..669}	n325102|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329029|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329029|-0.7586200|-0.2931010	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325102|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329029|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329029|-0.7586200|-0.2931010	chr2	237696291	237696959	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46879_PI429285431	5.695783	P	5.538464	P	1.11521278057123	0	lncRNA	51005-2_{3001..6000}	"gi|373838810|ref|NR_046057.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 33, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373838810|ref|NR_046057.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 33, non-coding RNA"	Chr17	 48641429	 48644428	+	8913	NR_046057.1	NA	NA	NA	NA	NA	inter
CUST_51763_PI429285431	2.175516	A	2.9262984	A	0.594281180502115	0	lncRNA	55314-1_{1..814}	hg19_lincRNAsTranscripts_TCONS_l2_00012222 range=chr19:302228-303170 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012222 range=chr19:302228-303170 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	   302228	   303041	+	NA	NA	NA	NA	MIER2	NA	chr19:305575-313170	inter
CUST_51049_PI429285431	0.8923738	A	0.8933946	A	0.999292685622916	0	lncRNA	54691-1_{1..396}	hg19_lincRNAsTranscripts_TCONS_l2_00007069 range=chr13:21904523-21918925 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007069 range=chr13:21904523-21918925 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 21904523	 21904918	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18365_PI429285431	6.670809	P	5.2219887	P	2.72984738876494	0	lncRNA	20092-1_{1..523}	lnc-CAMK4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CAMK4-1:2	chr5	111067478	111068000	+	lnc-CAMK4-1	lnc-CAMK4-1:2	ENSG00000246859	CTC-426B10.1	C5orf13	NA	chr5:111065000-111077878	inner
LNCA_21_P0006880	1.5161343	A	0.8951497	A	1.53792441465988	0	lncRNA	TCONS_00018229	NA	NA	NA	NA	XLOC_008509	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008509), lincRNA [TCONS_00018229]"	chr10:72728287-72728346	hs|10q22.1	Agilent_HUMAN_G3V2	TCONS_00018229	TCONS_00018229	chr10	 72728287	 72728346	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11449_PI429285431	2.6629784	A	2.4206805	A	1.18287522521272	0	lncRNA	13016-1_{1..606}	lnc-RNASEH2B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-RNASEH2B-2:1	chr13	 51659455	 51660060	+	lnc-RNASEH2B-2	lnc-RNASEH2B-2:1	XLOC_010392	linc-FAM124A-1	NA	NA	NA	inter
CUST_44432_PI429285431	3.527937	P	3.679101	P	0.90052360598395	0	lncRNA	49044-1_{1..1989}	"gi|268834430|ref|NR_003675.2| Homo sapiens glucuronidase, beta pseudogene 5 (GUSBP5), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|268834430|ref|NR_003675.2| Homo sapiens glucuronidase, beta pseudogene 5 (GUSBP5), non-coding RNA"	Chr4	144480625	144482613	+	441046	NR_003675.2	NA	NA	NA	NA	NA	inter
CUST_28067_PI429285431	2.2466254	A	1.7478071	A	1.4130556656017	0	lncRNA	29685-1_{1..741}	n325333|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325743|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325743|-0.8401130|-0.1671459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325333|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325743|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325743|-0.8401130|-0.1671459	chr2	 41958199	 41958939	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12686_PI429285431	1.0184195	A	0.8984516	A	1.08671068291775	0	lncRNA	14304-1_{1..571}	lnc-C3orf79-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C3orf79-5:1	chr3	153481850	153482420	+	lnc-C3orf79-5	lnc-C3orf79-5:1	XLOC_002884	linc-ARHGEF26-2	NA	NA	NA	inter
CUST_38078_PI429285431	2.1964417	A	2.0136282	A	1.13509535667198	0	lncRNA	39154-1_{1..2415}	n381060|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ayv.1||1.4877700|-0.2178174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381060|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ayv.1||1.4877700|-0.2178174	chr1	 16862254	 16864668	+	NA	NA	NA	NA	LOC100506533	NA	chr1:16862280-16863350	inter
CUST_3454_PI429285431	3.168356	P	3.2578533	P	0.93985017834295	0	lncRNA	3425-1_{1..552}	"transcript_id ""ENST00000590298.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590298.1"" | genecode_v17"	chr9	 84888374	 84888925	+	ENSG00000228430.4	ENST00000590298.1	RP11-15B24.5	RP11-15B24.5-010	NA	NA	NA	inter
CUST_4332_PI429285431	0.88638717	A	1.097503	A	0.863868826973889	0	lncRNA	4287-1_{1..816}	"transcript_id ""ENST00000548359.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548359.1"" | genecode_v17"	chr12	 79933983	 79934798	+	ENSG00000257474.1	ENST00000548359.1	RP11-359M6.1	RP11-359M6.1-003	NA	NA	NA	inter
CUST_24163_PI429285431	5.0570865	P	5.1812496	P	0.917536146871248	0	lncRNA	25714-1_{1..529}	lnc-TMBIM1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMBIM1-2:2	chr2	219231650	219232178	-	lnc-TMBIM1-2	lnc-TMBIM1-2:2	ENSG00000225062.1	AC021016.6	C2orf62	"hg19_refFlat_C2orf62:range=chr2:219221608-2192326875'pad=0,hg19_refFlat_C2orf62:range=chr2:219221608-2192326875'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50chr2:219221650-219232817"	NA	inner
CUST_33842_PI429285431	0.8881442	A	1.2061348	A	0.802186393047883	0	lncRNA	35389-1_{1..1504}	n340629|BC020470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3091|NULL|3.5633100|-0.0537166	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340629|BC020470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3091|NULL|3.5633100|-0.0537166	chr17	 35294771	 35296274	+	NA	NA	NA	NA	AATF	NA	chr17:35306175-35309602	inner
CUST_40942_PI429285431	6.517135	P	6.598338	P	0.945269099638528	0	lncRNA	41622-2_{3001..3988}	n410901|NR_038363|lncRNA|Homosapiens||RefGeneNoncode|NR_038363||4.7923700|-0.2531944	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410901|NR_038363|lncRNA|Homosapiens||RefGeneNoncode|NR_038363||4.7923700|-0.2531944	chr5	149375685	149376672	-	NA	NA	NA	NA	HMGXB3	NA	chr5:149380169-149390171	inner
CUST_50615_PI429285431	2.6445017	A	3.08676	P	0.735981649194139	0	lncRNA	54300-1_{1..598}	hg19_lincRNAsTranscripts_TCONS_l2_00002846 range=chr10:3954182-3977964 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002846 range=chr10:3954182-3977964 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	  3954182	  3954779	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40886_PI429285431	9.883799	P	10.16458	P	0.823145288618399	0	lncRNA	41577-2_{3001..4048}	n410695|NR_037945|lncRNA|Homosapiens||RefGeneNoncode|NR_037945||7.2327800|-0.1669978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410695|NR_037945|lncRNA|Homosapiens||RefGeneNoncode|NR_037945||7.2327800|-0.1669978	chr20	 57229308	 57230355	+	NA	NA	NA	NA	NPEPL1	NA	chr20:57264187-57290900	inner
CUST_18641_PI429285431	0.9149127	A	0.9156291	A	0.999503552630642	0	lncRNA	20345-1_{1..2194}	lnc-TCL1B-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCL1B-1:4	chr14	 96138014	 96140207	+	lnc-TCL1B-1	lnc-TCL1B-1:4	ENSG00000187621	TCL6	NA	NA	NA	inter
CUST_27111_PI429285431	2.2446244	A	1.3752395	A	1.82688383364344	0	lncRNA	28644-1_{1..1282}	n324223|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326623|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326623|-1.1736500|-0.2970515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324223|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326623|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326623|-1.1736500|-0.2970515	chr7	 22577750	 22579031	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31641_PI429285431	0.8970282	A	0.8976345	A	0.999579833159247	0	lncRNA	33393-1_{1..3000}	n338163|AK074042|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|552|NULL|-0.1515080|-0.2040466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338163|AK074042|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|552|NULL|-0.1515080|-0.2040466	chr22	 44578910	 44581909	-	NA	NA	NA	NA	PARVG	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PARVG:range=chr22:44579210-446023065'pad=0,hg19_refFlat_PARVG:range=chr22:44579210-446023065'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PARVG:range=chr22:44579210-445825255'pad=0,hg19_refFlat_PARVG:range=chr22:44579210-445825255'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-63.60;hg19_refFlat_PARVG:range=chr22:44568883-445825255'pad=0,hg19_refFlat_PARVG:range=chr22:44568883-445825255'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70chr22:44568910-44593619"	NA	inner
CUST_18648_PI429285431	1.4610159	A	2.1357474	A	0.62644879686045	0	lncRNA	20352-1_{1..3000}	lnc-FAM199X-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM199X-1:2	chrX	103358125	103361124	+	lnc-FAM199X-1	lnc-FAM199X-1:2	ENSG00000166707	LL0XNC01-46H11.1	MCART6	NA	chrX:103348125-103370531	inner
CUST_50818_PI429285431	2.2856996	A	1.8909523	A	1.31471245724675	0	lncRNA	54469-1_{1..205}	hg19_lincRNAsTranscripts_TCONS_l2_00004522 range=chr11:50280000-50302844 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004522 range=chr11:50280000-50302844 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 50280000	 50280204	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8744_PI429285431	7.1902237	P	7.395508	P	0.867367745309484	0	lncRNA	10287-1_{1..659}	lnc-SMCR7L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMCR7L-1:1	chr22	 39868119	 39868777	+	lnc-SMCR7L-1	lnc-SMCR7L-1:1	ENSG00000250953	ENST00000514789	MGAT3	NA	chr22:39858119-39878646	inner
CUST_17056_PI429285431	0.915696	A	1.474227	A	0.678993185262998	0	lncRNA	18765-1_{1..1887}	lnc-ZNF438-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF438-1:2	chr10	 31123050	 31124936	-	lnc-ZNF438-1	lnc-ZNF438-1:2	XLOC_008770	linc-LYZL2-4	NA	NA	NA	inter
CUST_30810_PI429285431	1.4667437	A	1.2021247	A	1.20131875247228	0	lncRNA	32597-1_{1..264}	n336737|Z75932|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328099|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328099|-1.1044500|-0.2813423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336737|Z75932|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328099|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328099|-1.1044500|-0.2813423	chr14	 22466239	 22466502	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010455	11.930546	P	11.481665	P	1.36498112343633	0	lncRNA	TCONS_00029733	NA	NA	NA	NA	XLOC_014405	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014405), lincRNA [TCONS_00029733]"	chr22:46531074-46531015	hs|22q13.31	Agilent_HUMAN_G3V2	TCONS_00029733	TCONS_00029733	chr22	 46531015	 46531074	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48487_PI429285431	3.9158783	P	3.9783766	P	0.957604409091263	0	lncRNA	52340-1_{1..261}	hg19_lincRNAsTranscripts_TCONS_l2_00000903 range=chr1:233046450-233060203 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000903 range=chr1:233046450-233060203 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	233046450	233046710	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12626_PI429285431	1.8477154	A	4.1084223	P	0.208669709621171	0	lncRNA	14241-1_{1..458}	lnc-AC016251.1-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC016251.1-9:2	chr15	 95675823	 95676280	-	lnc-AC016251.1-9	lnc-AC016251.1-9:2	XLOC_011591	linc-RGMA-9	NA	NA	NA	inter
CUST_6290_PI429285431	3.086654	P	3.8241282	P	0.599788514060853	0	lncRNA	6214-1_{1..1007}	"transcript_id ""ENST00000588418.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588418.1"" | genecode_v17"	chr19	   176907	   177913	+	ENSG00000267290.1	ENST00000588418.1	AC092192.1	AC092192.1-001	LOC100507200	NA	chr19:166907-187913	inter
CUST_428_PI429285431	4.10483	P	4.1617837	P	0.961291778356284	0	lncRNA	420-1_{1..372}	"transcript_id ""ENST00000457465.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457465.1"" | genecode_v17"	chr1	145377066	145377437	-	ENSG00000233396.1	ENST00000457465.1	RP11-458D21.1	RP11-458D21.1-004	NBPF10	NA	chr1:145367066-145368684	inter
CUST_7390_PI429285431	0.91154844	A	0.90112764	A	1.00724929799722	0	lncRNA	9036-1_{1..3000}	lnc-NINJ1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NINJ1-2:1	chr9	 95777209	 95780208	-	lnc-NINJ1-2	lnc-NINJ1-2:1	ENSG00000248502	ENST00000513278	FGD3	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_FGD3:range=chr9:95738539-957978715'pad=0,hg19_refFlat_FGD3:range=chr9:95738539-957978715'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50chr9:95767209-95787226"	NA	inner
CUST_6818_PI429285431	0.92573965	A	0.93131673	A	0.996141725065676	0	lncRNA	6766-1_{1..252}	"transcript_id ""ENST00000454182.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454182.1"" | genecode_v17"	chr21	 26310745	 26310996	-	ENSG00000230379.1	ENST00000454182.1	AP000146.2	AP000146.2-003	NA	NA	NA	inter
CUST_48940_PI429285431	0.89834183	A	4.6726174	P	0.0730852676113836	0	lncRNA	52782-1_{1..1184}	hg19_lincRNAsTranscripts_TCONS_l2_00018935 range=chr3:151488246-151502649 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018935 range=chr3:151488246-151502649 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	151488246	151489429	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44514_PI429285431	1.3937479	A	1.050933	A	1.26822867319128	0	lncRNA	49112-1_{1..3000}	"gi|221316656|ref|NR_026591.1| Homo sapiens RAD1 homolog (S. pombe) (RAD1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|221316656|ref|NR_026591.1| Homo sapiens RAD1 homolog (S. pombe) (RAD1), transcript variant 2, non-coding RNA"	Chr5	 34905365	 34908364	-	5810	NR_026591.1	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80"	NA	inter
CUST_45114_PI429285431	1.106701	A	0.91726774	A	1.14031567283802	0	lncRNA	49595-1_{1..2275}	"gi|254553257|ref|NR_028090.1| Homo sapiens uncharacterized LOC202781 (LOC202781), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254553257|ref|NR_028090.1| Homo sapiens uncharacterized LOC202781 (LOC202781), non-coding RNA"	NA	NA	NA	NA	NA	NR_028090.1	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30"	NA	Unknown
CUST_15096_PI429285431	0.89944327	A	1.3967546	A	0.708425805231725	0	lncRNA	16760-1_{1..483}	lnc-INSIG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INSIG1-1:1	chr7	155059238	155059720	+	lnc-INSIG1-1	lnc-INSIG1-1:1	XLOC_006304	linc-INSIG1-1	NA	NA	NA	inter
CUST_45065_PI429285431	6.104642	P	5.8899713	P	1.16043901004149	0	lncRNA	49553-1_{1..3000}	"gi|374349220|ref|NR_046216.1| Homo sapiens uncharacterized protein MGC27345 (MGC27345), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|374349220|ref|NR_046216.1| Homo sapiens uncharacterized protein MGC27345 (MGC27345), non-coding RNA"	Chr7	127937738	127940737	-	157247	NR_046216.1	NA	NA	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10"	NA	inter
CUST_7178_PI429285431	13.553212	P	13.417583	P	1.09857167518967	0	lncRNA	7368-1_{1..140}	"transcript_id ""ENST00000516656.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516656.1"" | genecode_v17"	chr2	161253340	161253479	-	ENSG00000252465.1	ENST00000516656.1	RMRPP3	RMRPP3-201	RBMS1	NA	chr2:161243340-161263479	inner
CUST_45466_PI429285431	12.232965	P	12.06131	P	1.12634984574317	0	lncRNA	49881-1_{1..984}	"gi|215422347|ref|NR_024542.1| Homo sapiens small nucleolar RNA host gene 7 (non-protein coding) (SNHG7), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|215422347|ref|NR_024542.1| Homo sapiens small nucleolar RNA host gene 7 (non-protein coding) (SNHG7), transcript variant 2, non-coding RNA"	Chr9	139619046	139620029	-	84973	NR_024542.1	NA	NA	NA	NA	NA	inter
CUST_40321_PI429285431	1.1242003	A	2.3398256	A	0.430586412519224	0	lncRNA	41124-1_{1..648}	n408361|NR_029461|lncRNA|Homosapiens||RefGeneNoncode|NR_029461||-1.2134300|-0.1381059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408361|NR_029461|lncRNA|Homosapiens||RefGeneNoncode|NR_029461||-1.2134300|-0.1381059	chr6	  2839498	  2840145	+	NA	NA	NA	NA	SERPINB1	NA	chr6:2833733-2842081	inter
CUST_27204_PI429285431	0.9628578	A	0.94897825	A	1.00966699740621	0	lncRNA	28746-1_{1..442}	n324336|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042754|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042754|-1.1766800|-0.2234917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324336|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042754|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042754|-1.1766800|-0.2234917	chr6	153157323	153157764	-	NA	NA	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20"	NA	inter
CUST_9494_PI429285431	1.4624282	A	0.9169829	A	1.45947075269044	0	lncRNA	11001-1_{1..260}	lnc-WFDC2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WFDC2-2:1	chr20	 44085249	 44085508	+	lnc-WFDC2-2	lnc-WFDC2-2:1	XLOC_013535	linc-WFDC2-1	NA	NA	NA	inter
CUST_26521_PI429285431	1.7976727	A	2.1729538	A	0.770955182329703	0	lncRNA	28028-1_{1..602}	lnc-GML-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GML-1:1	chr8	143893151	143893752	+	lnc-GML-1	lnc-GML-1:1	ENSG00000253715.1	RP11-706C16.8	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00"	NA	inter
CUST_39313_PI429285431	7.0597343	P	6.1693583	P	1.85365916767505	0	lncRNA	40280-1_{1..1277}	n386343|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010hrq.1||-1.1563600|-0.3114283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386343|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010hrq.1||-1.1563600|-0.3114283	chr3	123210403	123211679	-	NA	NA	NA	NA	PTPLB	NA	chr3:123213363-123221680	inter
CUST_20_PI429201921	0.91301876	A	1.1940283	A	0.82301490297253	0	lncRNA	21-1_{1..915}	TC13000910.hg.1	TCONS_l2_00007350-XLOC_l2_003606 // Broad TUCP // linc-MPHOSPH8-12 chr13:+:19433966-19434882 // chr13 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr13:+:19433966-19434882	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00007350-XLOC_l2_003606	linc-MPHOSPH8-12	chr13	 19433966	 19434882	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26397_PI429285431	2.6285331	A	2.5358121	A	1.06637953581649	0	lncRNA	27904-1_{1..626}	lnc-SNURF-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNURF-1:12	chr15	 25301630	 25302255	+	lnc-SNURF-1	lnc-SNURF-1:12	ENSG00000224078.4	SNHG14	SNRPN	NA	chr15:25291630-25311712	inter
CUST_44836_PI429285431	10.412196	P	9.914859	P	1.41160554268533	0	lncRNA	49365-1_{1..1195}	"gi|259089409|ref|NR_028496.1| Homo sapiens oligosaccharyltransferase complex subunit pseudogene 1 (OSTCP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|259089409|ref|NR_028496.1| Homo sapiens oligosaccharyltransferase complex subunit pseudogene 1 (OSTCP1), non-coding RNA"	Chr6	159262149	159263343	-	202459	NR_028496.1	NA	NA	NA	NA	NA	inter
CUST_33856_PI429285431	1.5907131	A	1.5109847	A	1.05681906637062	0	lncRNA	35400-1_{1..2200}	n340642|AK095097|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3104|NULL|-1.2087600|-0.2856461	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340642|AK095097|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3104|NULL|-1.2087600|-0.2856461	chr17	 36952424	 36954623	-	NA	NA	NA	NA	CWC25	NA	chr17:36957446-36964624	inner
CUST_34041_PI429285431	2.7493112	A	0.90000397	A	3.60327117449795	0	lncRNA	35573-1_{1..2786}	n340859|AK096931|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3324|NULL|1.6994400|-0.2436343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n340859|AK096931|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3324|NULL|1.6994400|-0.2436343	chr17	 73779187	 73781972	-	NA	NA	NA	NA	UNK	"hg19_refFlat_UNK:range=chr17:73780962-738204985'pad=0,hg19_refFlat_UNK:range=chr17:73780962-738204985'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.20chr17:73780920-73791974"	NA	inner
CUST_10219_PI429285431	0.8958951	A	0.8967045	A	0.999439124021825	0	lncRNA	11744-1_{1..307}	lnc-PRMT8-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRMT8-1:2	chr12	  3480504	  3480810	+	lnc-PRMT8-1	lnc-PRMT8-1:2	XLOC_009622	linc-PRMT8	NA	NA	NA	inter
CUST_41969_PI429285431	12.850833	P	13.713289	P	0.550015431015702	0	lncRNA	43763-1_{1..115}	ENST00000408361 ncrna:miRNA chromosome:GRCh37:2:133014539:133014653:-1 gene:ENSG00000221288 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408361 ncrna:miRNA chromosome:GRCh37:2:133014539:133014653:-1 gene:ENSG00000221288 gene_biotype:miRNA transcript_biotype:miRNA	chr2	133014539	133014653	-	ENSG00000221288	ENST00000408361	NA	NA	NA	NA	NA	inter
LNCA_21_P0014135	8.380435	P	7.6652637	P	1.64167813252771	0	lncRNA	XR_108550	XR_108550	XR_108550	NA	Hs.612535	LOC100505937	uncharacterized LOC100505937	NA	THC2560850	NA	"PREDICTED: Homo sapiens hypothetical LOC100505937 (LOC100505937), miscRNA [XR_108550]"	chr4:22728644-22728703	hs|4p15.2	Agilent_HUMAN_G3V2	XR_108550	XR_108550	chr4	 22728644	 22728703	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37011_PI429285431	5.3720374	P	4.990114	P	1.30307796050574	0	lncRNA	38151-1_{1..2822}	n345468|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1017|NULL|-1.6600300|-0.3060739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345468|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1017|NULL|-1.6600300|-0.3060739	chr1	161102697	161105518	+	NA	NA	NA	NA	DEDD	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40chr1:161092697-161102478"	NA	inter
LNCA_21_P0010788	0.91685444	A	0.92460704	A	0.994640719627717	0	lncRNA	ENST00000416510	NA	BC023608	NA	NA	XLOC_l2_001322	NA	ENST00000416510	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001322), lincRNA [TCONS_l2_00002779]"	chr1:222262570-222262511	hs|1q41	Agilent_HUMAN_G3V2	ENST00000416510	ENST00000416510	chr1	222262511	222262570	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5464_PI429285431	0.90014666	A	0.9077759	A	0.994725771646078	0	lncRNA	5397-1_{1..2907}	"transcript_id ""ENST00000414816.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000414816.1"" | genecode_v17"	chr16	 24672743	 24675649	-	ENSG00000224310.1	ENST00000414816.1	AC012317.1	AC012317.1-001	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.51;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90"	NA	inter
CUST_31727_PI429285431	5.3231907	P	5.402783	P	0.946325036712057	0	lncRNA	33468-1_{1..681}	n338260|AL359932|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|653|NULL|0.6852560|-0.1741488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338260|AL359932|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|653|NULL|0.6852560|-0.1741488	chr19	   999794	  1000474	+	NA	NA	NA	NA	C19orf6	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60chr19:1009650-1012756"	NA	inner
CUST_48140_PI429285431	1.4078053	A	1.5711418	A	0.892957551046703	0	lncRNA	52008-1_{1..2221}	"gi|397137373|ref|XR_133013.2| PREDICTED: Homo sapiens uncharacterized LOC100506465, transcript variant 1 (LOC100506465), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397137373|ref|XR_133013.2| PREDICTED: Homo sapiens uncharacterized LOC100506465, transcript variant 1 (LOC100506465), misc_RNA"	NA	NA	NA	NA	NA	XR_133013.2	NA	NA	NA	NA	NA	Unknown
CUST_49443_PI429285431	5.608264	P	4.959941	P	1.56734524212206	0	lncRNA	53243-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00022686 range=chr5:180256963-180262942 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022686 range=chr5:180256963-180262942 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	180256963	180259962	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6135_PI429285431	0.9954297	A	0.9055256	A	1.06429943312302	0	lncRNA	6061-1_{1..922}	"transcript_id ""ENST00000584547.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584547.1"" | genecode_v17"	chr18	 24923216	 24924137	+	ENSG00000264790.1	ENST00000584547.1	RP11-26N15.2	RP11-26N15.2-001	NA	NA	NA	inter
CUST_13000_PI429285431	1.041713	A	0.9213288	A	1.08702430632536	0	lncRNA	14627-1_{1..576}	lnc-JPH3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JPH3-2:1	chr16	 87808451	 87809026	+	lnc-JPH3-2	lnc-JPH3-2:1	XLOC_011823	linc-BANP-2	KLHDC4	NA	chr16:87798451-87799598	inter
CUST_15266_PI429285431	1.2447345	A	1.1881932	A	1.0399695591535	0	lncRNA	16939-1_{1..2138}	lnc-MTHFSD-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTHFSD-2:10	chr16	 86511492	 86513629	-	lnc-MTHFSD-2	lnc-MTHFSD-2:10	XLOC_012046	linc-COX4NB-9	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50"	NA	inter
CUST_3246_PI429285431	1.1650348	A	1.2271218	A	0.957877452826127	0	lncRNA	3225-1_{1..639}	"transcript_id ""ENST00000523554.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523554.1"" | genecode_v17"	chr8	101441062	101441700	-	ENSG00000253842.1	ENST00000523554.1	KB-173C10.1	KB-173C10.1-002	NA	NA	NA	inter
CUST_43130_PI429285431	3.5402498	P	3.751057	P	0.864053650757556	0	lncRNA	47944-1_{1..385}	ENST00000563932 havana:lincRNA chromosome:GRCh37:HG536_PATCH:69723952:69725762:-1 gene:ENSG00000260348 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000563932 havana:lincRNA chromosome:GRCh37:HG536_PATCH:69723952:69725762:-1 gene:ENSG00000260348 gene_biotype:lincRNA transcript_biotype:lincRNA	chrHG536_PATCH	 69723952	 69724336	-	ENSG00000260348	ENST00000563932	NA	NA	NA	NA	NA	Unknown
CUST_17072_PI429285431	2.5629892	A	1.4514718	A	2.16072789197318	0	lncRNA	18781-1_{1..457}	lnc-TSC22D3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSC22D3-1:1	chrX	106788945	106789401	-	lnc-TSC22D3-1	lnc-TSC22D3-1:1	XLOC_008205	linc-NUP62CL	FRMPD3	NA	chrX:106778945-106799051	inter
CUST_20093_PI429285431	1.7889519	A	1.8096453	A	0.98575880708294	0	lncRNA	21741-1_{1..656}	lnc-LTF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LTF-1:1	chr3	 46448388	 46449043	-	lnc-LTF-1	lnc-LTF-1:1	ENSG00000223552.1	RP11-24F11.2	CCRL2	"hg19_refFlat_TIGD1:range=chr2:233412817-2334145925'pad=0,hg19_refFlat_TIGD1:range=chr2:233412817-2334145925'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40chr3:46448721-46451014"	NA	inter
LNCA_21_P0001755	2.081305	A	1.7344003	A	1.27182899085476	0	lncRNA	TCONS_00002580	NA	NA	NA	NA	XLOC_001195	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001195), lincRNA [TCONS_00002580]"	chr1:212804639-212804580	hs|1q32.3	Agilent_HUMAN_G3V2	TCONS_00002580	TCONS_00002580	chr1	212804580	212804639	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45639_PI429285431	1.1963975	A	0.9014785	A	1.2268160958266	0	lncRNA	50019-2_{3001..3822}	"gi|254826701|ref|NR_027431.2| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|254826701|ref|NR_027431.2| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_027431.2	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50"	NA	Unknown
CUST_47589_PI429285431	0.8989921	A	1.095947	A	0.872389977073341	0	lncRNA	51592-1_{1..2404}	"gi|410170779|ref|XR_132683.3| PREDICTED: Homo sapiens uncharacterized LOC401589 (LOC401589), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170779|ref|XR_132683.3| PREDICTED: Homo sapiens uncharacterized LOC401589 (LOC401589), misc_RNA"	ChrX	 51793956	 51796359	-	401589	XR_132683.4	NA	NA	NA	NA	NA	inter
CUST_45178_PI429285431	2.04897	A	0.8944117	A	2.22616156356426	0	lncRNA	49650-2_{3001..3912}	"gi|229577149|ref|NR_027639.1| Homo sapiens ADAM metallopeptidase domain 9 (ADAM9), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|229577149|ref|NR_027639.1| Homo sapiens ADAM metallopeptidase domain 9 (ADAM9), transcript variant 4, non-coding RNA"	Chr8	 38857505	 38858416	+	8754	NR_027639.1	NA	NA	NA	NA	NA	inter
CUST_255_PI429285431	1.0208194	A	0.9172231	A	1.07444847483543	0	lncRNA	247-1_{1..301}	"transcript_id ""ENST00000596354.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596354.1"" | genecode_v17"	chr1	 61714666	 61714966	-	ENSG00000237853.2	ENST00000596354.1	RP5-833A20.1	RP5-833A20.1-002	NFIA	NA	chr1:61704666-61729182	inner
CUST_45138_PI429285431	7.508969	P	7.7210436	P	0.863294917493575	0	lncRNA	49618-1_{1..1434}	"gi|211938422|ref|NR_024361.1| Homo sapiens family with sequence similarity 86, member B3, pseudogene (FAM86B3P), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|211938422|ref|NR_024361.1| Homo sapiens family with sequence similarity 86, member B3, pseudogene (FAM86B3P), transcript variant 2, non-coding RNA"	Chr8	  8086092	  8087525	+	286042	NR_024361.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003501	0.9137779	A	0.9094635	A	1.00299499024417	0	lncRNA	ENST00000487657	NA	NA	NA	NA	XLOC_004073	NA	ENST00000487657	NA	NA	"BROAD Institute lincRNA (XLOC_004073), lincRNA [TCONS_00007825]"	chr4:129504525-129504466	hs|4q28.2	Agilent_HUMAN_G3V2	ENST00000487657	ENST00000487657	chr4	129504466	129504525	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40690_PI429285431	5.6952376	P	5.757422	P	0.957812786273623	0	lncRNA	41425-1_{1..1498}	n410248|NR_037173|lncRNA|Homosapiens||RefGeneNoncode|NR_037173||-0.6128850|-0.2598410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410248|NR_037173|lncRNA|Homosapiens||RefGeneNoncode|NR_037173||-0.6128850|-0.2598410	chr6	 32811862	 32813359	+	NA	NA	NA	NA	TAP2	"hg19_refFlat_TAP1:range=chr6:32813356-328215935'pad=0,hg19_refFlat_TAP1:range=chr6:32813356-328215935'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_ssto_hap7:4244129-42523665'pad=0,hg19_refFlat_TAP1:range=chr6_ssto_hap7:4244129-42523665'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TAP1:range=chr6_mann_hap4:4270552-42787895'pad=0,hg19_refFlat_TAP1:range=chr6_mann_hap4:4270552-42787895'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_cox_hap2:4257884-42661215'pad=0,hg19_refFlat_TAP1:range=chr6_cox_hap2:4257884-42661215'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_dbb_hap3:4094734-41029715'pad=0,hg19_refFlat_TAP1:range=chr6_dbb_hap3:4094734-41029715'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_apd_hap1:4100360-41085975'pad=0,hg19_refFlat_TAP1:range=chr6_apd_hap1:4100360-41085975'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_mcf_hap5:4150233-41584705'pad=0,hg19_refFlat_TAP1:range=chr6_mcf_hap5:4150233-41584705'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_qbl_hap6:4045463-40537005'pad=0,hg19_refFlat_TAP1:range=chr6_qbl_hap6:4045463-40537005'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80chr6:32801862-32806547"	NA	inner
CUST_17925_PI429285431	6.5201406	P	6.734127	P	0.862151672312101	0	lncRNA	19657-1_{1..324}	lnc-NDUFS6-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDUFS6-8:1	chr5	  2278347	  2278670	+	lnc-NDUFS6-8	lnc-NDUFS6-8:1	XLOC_004253	linc-C5orf38-3	NA	NA	NA	inter
CUST_2228_PI429285431	0.89570665	A	0.8960847	A	0.999737990038996	0	lncRNA	2220-1_{1..581}	"transcript_id ""ENST00000511940.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511940.1"" | genecode_v17"	chr5	 85649621	 85650201	+	ENSG00000248363.1	ENST00000511940.1	CTC-261N6.1	CTC-261N6.1-001	NA	NA	NA	inter
CUST_20937_PI429285431	4.1571703	P	4.4972463	P	0.789999694226582	0	lncRNA	22568-1_{1..378}	lnc-AC021860.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC021860.1-1:1	chr4	 38620745	 38621122	-	lnc-AC021860.1-1	lnc-AC021860.1-1:1	ENSG00000231160.3	RP11-617D20.1	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-60.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10"	NA	inter
CUST_43894_PI429285431	10.151182	P	9.681212	P	1.38508066586871	0	lncRNA	48610-2_{3001..5095}	"gi|385275069|ref|NR_047657.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385275069|ref|NR_047657.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 6, non-coding RNA"	Chr2	 97261892	 97263986	-	55683	NR_047657.1	NA	NA	NA	NA	NA	inter
CUST_4463_PI429285431	3.6206796	P	4.4927115	P	0.546376788263893	0	lncRNA	4413-1_{1..2835}	"transcript_id ""ENST00000602635.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602635.1"" | genecode_v17"	chr12	124570308	124573142	+	ENSG00000269923.1	ENST00000602635.1	RP11-214K3.24	RP11-214K3.24-001	ZNF664-FAM101A	NA	chr12:124560308-124583142	inner
CUST_20302_PI429285431	0.9142597	A	0.90546334	A	1.00611579772243	0	lncRNA	21946-1_{1..3000}	lnc-SRGAP3-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SRGAP3-1:14	chr3	  9435672	  9438671	-	lnc-SRGAP3-1	lnc-SRGAP3-1:14	ENSG00000206573.4	RP11-58B17.1	LOC100652926	NA	chr3:9435634-9438752	inter
CUST_20864_PI429285431	0.8961879	A	0.8898412	A	1.00440888788409	0	lncRNA	22495-1_{1..1781}	lnc-CTD-2054N24.2.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2054N24.2.1-3:1	chr15	100668475	100670255	+	lnc-CTD-2054N24.2.1-3	lnc-CTD-2054N24.2.1-3:1	ENSG00000259356.1	RP11-90E5.1	ADAMTS17	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50chr15:100658475-100679948"	NA	inner
CUST_15221_PI429285431	1.3374083	A	0.96531117	A	1.29423278627118	0	lncRNA	16892-1_{1..3000}	lnc-RP11-701P16.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-701P16.2.1-1:1	chr4	185765276	185768275	+	lnc-RP11-701P16.2.1-1	lnc-RP11-701P16.2.1-1:1	XLOC_003809	linc-HELT-4	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.84"	NA	inter
CUST_4489_PI429285431	2.3385842	A	1.7059937	A	1.5503462940969	0	lncRNA	4438-1_{1..366}	"transcript_id ""ENST00000544499.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544499.1"" | genecode_v17"	chr12	127216842	127217207	-	ENSG00000256128.1	ENST00000544499.1	RP11-173C20.2	RP11-173C20.2-006	NA	NA	NA	inter
CUST_33565_PI429285431	3.1051574	A	3.311643	P	0.866645808135529	0	lncRNA	35130-1_{1..900}	n340314|BC030121|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2775|NULL|-1.0404700|-0.2503336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340314|BC030121|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2775|NULL|-1.0404700|-0.2503336	chr5	  7347098	  7347997	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49860_PI429285431	3.5625064	P	4.4341	P	0.546542806251415	0	lncRNA	53612-1_{1..1523}	hg19_lincRNAsTranscripts_TCONS_l2_00026004 range=chr7:72301133-72308055 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026004 range=chr7:72301133-72308055 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 72301133	 72302655	+	NA	NA	NA	NA	TYW1B	NA	chr7:72291133-72298813	inter
LNCA_21_P0004573	0.92155856	A	0.8966345	A	1.01742613582636	0	lncRNA	TCONS_00011029	NA	NA	NA	NA	XLOC_004985	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004985), lincRNA [TCONS_00011029]"	chr5:125469816-125469757	hs|5q23.2	Agilent_HUMAN_G3V2	TCONS_00011029	TCONS_00011029	chr5	125469757	125469816	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28605_PI429285431	0.9091381	A	1.0623301	A	0.899258627016098	0	lncRNA	30287-1_{1..540}	n325968|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048114|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048114|-1.1219700|-0.4615327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325968|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048114|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048114|-1.1219700|-0.4615327	chr10	 53986467	 53987006	-	NA	NA	NA	NA	PRKG1	NA	chr10:53976467-54000871	inner
CUST_17821_PI429285431	3.8175197	P	2.6765919	P	2.20522796224354	0	lncRNA	19557-1_{1..1111}	lnc-C15orf41-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf41-6:2	chr15	 36449352	 36450462	+	lnc-C15orf41-6	lnc-C15orf41-6:2	XLOC_011210	linc-C15orf41-3	NA	NA	NA	inter
CUST_26107_PI429285431	0.8902952	A	0.8902559	A	1.00002724105523	0	lncRNA	27619-1_{1..3000}	lnc-SAP30-5:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:6	chr4	174460220	174463219	+	lnc-SAP30-5	lnc-SAP30-5:6	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174450220-174451378	inter
CUST_49216_PI429285431	6.573824	P	6.2422776	P	1.25836146790735	0	lncRNA	53036-1_{1..1033}	hg19_lincRNAsTranscripts_TCONS_l2_00020918 range=chr4:183938593-183958466 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020918 range=chr4:183938593-183958466 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	183938593	183939625	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32376_PI429285431	0.887073	A	0.88448584	A	1.0017948915526	0	lncRNA	34052-1_{1..579}	n338965|AF085895|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1393|NULL|-1.0470100|-0.2529237	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338965|AF085895|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1393|NULL|-1.0470100|-0.2529237	chr2	135939907	135940485	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43094_PI429285431	8.13034	P	8.660039	P	0.692699241880549	0	lncRNA	47436-1_{1..133}	ENST00000391111 ncrna:snRNA chromosome:GRCh37:10:105072193:105072325:-1 gene:ENSG00000212413 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391111 ncrna:snRNA chromosome:GRCh37:10:105072193:105072325:-1 gene:ENSG00000212413 gene_biotype:snRNA transcript_biotype:snRNA	chr10	105072193	105072325	-	ENSG00000212413	ENST00000391111	NA	NA	PCGF6	NA	chr10:105062553-105082325	inner
CUST_18891_PI429285431	0.9110862	A	1.3271435	A	0.749470033335412	0	lncRNA	20584-1_{1..3000}	lnc-AL136219.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AL136219.1-3:1	chr13	 21875154	 21878153	-	lnc-AL136219.1-3	lnc-AL136219.1-3:1	ENSG00000246151	AL158032.1	NA	"hg19_refFlat_MIPEP:range=chr13:24304487-244634595'pad=0,hg19_refFlat_MIPEP:range=chr13:24304487-244634595'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.60;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30"	NA	inter
LNCA_21_P0013566	1.5402439	A	1.2935861	A	1.18645534304425	0	lncRNA	TCONS_l2_00028738	NA	NA	NA	NA	XLOC_l2_014777	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014777), lincRNA [TCONS_l2_00028738]"	chr9:40308477-40308536	hs|9p13.1	Agilent_HUMAN_G3V2	TCONS_l2_00028738	TCONS_l2_00028738	chr9	 40308477	 40308536	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46750_PI429285431	4.377476	P	4.3078785	P	1.04942386218809	0	lncRNA	50900-1_{1..2006}	"gi|223717962|ref|NR_026880.1| Homo sapiens uncharacterized protein MGC12916 (MGC12916), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223717962|ref|NR_026880.1| Homo sapiens uncharacterized protein MGC12916 (MGC12916), non-coding RNA"	Chr17	 14207057	 14209062	+	84815	NR_026880.1	NA	NA	NA	NA	NA	inter
CUST_48403_PI429285431	0.8944617	A	0.89266837	A	1.00124381452978	0	lncRNA	52256-1_{1..2465}	hg19_lincRNAsTranscripts_TCONS_l2_00000549 range=chr1:142803534-142808679 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000549 range=chr1:142803534-142808679 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	142803534	142805998	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80"	NA	inter
CUST_11036_PI429285431	3.9560134	P	3.8353603	P	1.08722693270859	0	lncRNA	12582-1_{1..455}	lnc-VN1R2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VN1R2-1:4	chr19	 53727674	 53728128	+	lnc-VN1R2-1	lnc-VN1R2-1:4	XLOC_013142	linc-VN1R2	NA	"hg19_refFlat_NDUFV2:range=chr18:9102742-91342775'pad=0,hg19_refFlat_NDUFV2:range=chr18:9102742-91342775'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70"	NA	inter
CUST_995_PI429285431	1.2246969	A	0.9079381	A	1.24552916175283	0	lncRNA	984-1_{1..709}	"transcript_id ""ENST00000453322.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453322.1"" | genecode_v17"	chr2	105320216	105320924	+	ENSG00000228528.1	ENST00000453322.1	AC068057.1	AC068057.1-001	NA	NA	NA	inter
CUST_47479_PI429285431	7.6030564	P	7.537298	P	1.04663499323961	0	lncRNA	51500-1_{1..973}	"gi|336595084|ref|NR_038941.1| Homo sapiens uncharacterized LOC100128531 (LOC100128531), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336595084|ref|NR_038941.1| Homo sapiens uncharacterized LOC100128531 (LOC100128531), non-coding RNA"	Chr22	 25498384	 25499356	-	100128531	NR_038941.1	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90"	NA	inter
CUST_36838_PI429285431	1.1421258	A	0.96473724	A	1.13083509310227	0	lncRNA	38003-1_{1..976}	n345311|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_860|NULL|-1.3512300|-0.1667955	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345311|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_860|NULL|-1.3512300|-0.1667955	chr15	 74683012	 74683987	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22363_PI429285431	4.682795	P	4.4746656	P	1.15518939259245	0	lncRNA	23957-1_{1..2542}	lnc-ZNF862-1:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:18	chr7	149530896	149533437	+	lnc-ZNF862-1	lnc-ZNF862-1:18	ENSG00000197558.7	SSPO	ZNF862	NA	chr7:149535509-149541067	inner
CUST_6250_PI429285431	1.0066502	A	1.3715913	A	0.776500576052912	0	lncRNA	6175-1_{1..287}	"transcript_id ""ENST00000580927.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580927.1"" | genecode_v17"	chr18	 69557645	 69557931	-	ENSG00000265995.1	ENST00000580927.1	RP11-736G13.1	RP11-736G13.1-001	NA	NA	NA	inter
CUST_14321_PI429285431	1.9527009	A	1.3125113	A	1.55853396949627	0	lncRNA	15979-1_{1..372}	lnc-MBOAT1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBOAT1-2:2	chr6	 19804906	 19805277	-	lnc-MBOAT1-2	lnc-MBOAT1-2:2	XLOC_005634	linc-DEK-1	NA	NA	NA	inter
CUST_30806_PI429285431	8.35417	P	8.57384	P	0.858761845929936	0	lncRNA	32593-1_{1..288}	n336719|Z70768|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327978|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327978|1.6452700|-0.3204227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336719|Z70768|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327978|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327978|1.6452700|-0.3204227	chr9	 35060829	 35061116	-	NA	NA	NA	NA	VCP	NA	chr9:35056065-35071607	inner
CUST_21217_PI429285431	2.6057787	A	2.8113945	A	0.867168465927772	0	lncRNA	22842-1_{1..577}	lnc-RARRES2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RARRES2-2:1	chr7	150069582	150070158	-	lnc-RARRES2-2	lnc-RARRES2-2:1	ENSG00000240449.1	RP4-584D14.5	ZNF775	"hg19_refFlat_REPIN1:range=chr7:150068331-1500700345'pad=0,hg19_refFlat_REPIN1:range=chr7:150068331-1500700345'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.00;hg19_refFlat_ZNF696:range=chr8:144375172-1443789705'pad=0,hg19_refFlat_ZNF696:range=chr8:144375172-1443789705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_REPIN1:range=chr7:150066801-1500700345'pad=0,hg19_refFlat_REPIN1:range=chr7:150066801-1500700345'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.00chr7:150076406-150079679"	NA	inner
CUST_51041_PI429285431	7.0068555	P	6.293694	P	1.63939272398534	0	lncRNA	54683-1_{1..477}	hg19_lincRNAsTranscripts_TCONS_l2_00006706 range=chr13:19969537-19982086 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006706 range=chr13:19969537-19982086 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 19969537	 19970013	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004988	4.489143	P	5.3278875	P	0.559129938126563	0	lncRNA	TCONS_00012041	NA	NA	NA	NA	XLOC_005575	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005575), lincRNA [TCONS_00012041]"	chr6:1321854-1321795	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_00012041	TCONS_00012041	chr6	  1321795	  1321854	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21656_PI429285431	1.2303876	A	1.2129258	A	1.01217714239296	0	lncRNA	23267-1_{1..2446}	lnc-ZNF643-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZNF643-1:1	chr1	 40929991	 40932436	+	lnc-ZNF643-1	lnc-ZNF643-1:1	ENSG00000260920.1	RP1-228H13.5	ZNF643	NA	chr1:40919991-40929390	inter
CUST_14423_PI429285431	0.900156	A	0.90507686	A	0.996594930208938	0	lncRNA	16084-1_{1..932}	lnc-RP4-725G10.1.1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP4-725G10.1.1-5:2	chr7	 56684598	 56685529	-	lnc-RP4-725G10.1.1-5	lnc-RP4-725G10.1.1-5:2	XLOC_006459	linc-LOC389493-3	NA	NA	NA	inter
CUST_39792_PI429285431	4.0890613	P	4.031411	P	1.04076929132355	0	lncRNA	40702-1_{1..1614}	n406134|NR_003545|lncRNA|Homosapiens||RefGeneNoncode|NR_003545||3.8022600|-0.4614632	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406134|NR_003545|lncRNA|Homosapiens||RefGeneNoncode|NR_003545||3.8022600|-0.4614632	chr5	 64920557	 64922170	+	NA	NA	NA	NA	C5orf44	NA	chr5:64920558-64936532	inner
CUST_15699_PI429285431	4.24547	P	4.457805	P	0.863139110685145	0	lncRNA	17386-1_{1..783}	lnc-FSCN2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FSCN2-1:3	chr17	 79494083	 79494865	+	lnc-FSCN2-1	lnc-FSCN2-1:3	XLOC_012338	linc-FSCN2-1	FSCN2	NA	chr17:79495417-79504156	inter
CUST_48335_PI429285431	4.266716	P	4.28187	P	0.989551021484238	0	lncRNA	52190-1_{1..737}	hg19_lincRNAsTranscripts_TCONS_l2_00000270 range=chr1:48159883-48169113 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000270 range=chr1:48159883-48169113 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 48159883	 48160619	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8701_PI429285431	4.9405713	P	5.1151743	P	0.886011297643866	0	lncRNA	10247-2_{3001..5699}	lnc-CLLU1.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CLLU1.1-2:3	chr12	 92580902	 92583600	+	lnc-CLLU1.1-2	lnc-CLLU1.1-2:3	ENSG00000245904	RP11-796E2.4	NA	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60"	NA	inter
CUST_24714_PI429285431	1.0018756	A	0.9000977	A	1.07309507284837	0	lncRNA	26260-1_{1..481}	lnc-C4orf33-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C4orf33-1:3	chr4	130719653	130720133	+	lnc-C4orf33-1	lnc-C4orf33-1:3	ENSG00000249618.1	RP11-422J15.1	NA	NA	NA	inter
CUST_8232_PI429285431	1.812873	A	1.7833183	A	1.02069703032868	0	lncRNA	9822-2_{3001..3252}	lnc-SPAM1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPAM1-4:4	chr7	124785769	124786020	+	lnc-SPAM1-4	lnc-SPAM1-4:4	ENSG00000224897	RP11-3B12.1	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.61"	NA	inter
CUST_47799_PI429285431	7.2653623	P	7.481518	P	0.860856277119584	0	lncRNA	51720-1_{1..777}	"gi|323510640|ref|NR_037871.1| Homo sapiens tektin 4 pseudogene (LOC100233156), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|323510640|ref|NR_037871.1| Homo sapiens tektin 4 pseudogene (LOC100233156), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NR_037871.1	NA	NA	NA	NA	NA	Unknown
CUST_37952_PI429285431	0.91526663	A	0.91213024	A	1.00217634469328	0	lncRNA	39042-1_{1..241}	n346499|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2049|NULL|-1.2955100|-0.2429459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346499|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2049|NULL|-1.2955100|-0.2429459	chr1	 59184232	 59184472	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25062_PI429285431	2.7242866	A	3.0128944	P	0.818691714586804	0	lncRNA	26599-1_{1..752}	lnc-FAM168A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM168A-1:1	chr11	 73106929	 73107680	-	lnc-FAM168A-1	lnc-FAM168A-1:1	ENSG00000256928.1	RP11-809N8.2	FAM168A	NA	chr11:73117028-73117481	inner
CUST_35861_PI429285431	0.9008994	A	1.2345028	A	0.79355196236695	0	lncRNA	37256-1_{1..1703}	n344528|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_76|NULL|-1.3172100|-0.1798338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344528|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_76|NULL|-1.3172100|-0.1798338	chr7	 39773148	 39774850	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46308_PI429285431	7.062621	P	6.330564	P	1.66100567220512	0	lncRNA	50539-1_{1..1773}	"gi|387912566|ref|NR_049738.1| Homo sapiens methyltransferase like 21D (METTL21D), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387912566|ref|NR_049738.1| Homo sapiens methyltransferase like 21D (METTL21D), transcript variant 3, non-coding RNA"	Chr14	 50575350	 50577122	-	79609	NR_049738.1	NA	NA	NA	NA	NA	inter
CUST_16591_PI429285431	0.8969148	A	0.8922014	A	1.00327242264324	0	lncRNA	18292-1_{1..1242}	lnc-COX7C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COX7C-1:1	chr5	 85815203	 85816444	+	lnc-COX7C-1	lnc-COX7C-1:1	XLOC_004451	linc-COX7C-1	NA	NA	NA	inter
CUST_8302_PI429285431	5.641332	P	5.79914	P	0.896385986496115	0	lncRNA	9887-1_{1..2317}	lnc-EIF2AK4-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2AK4-2:4	chr15	 40357422	 40359738	+	lnc-EIF2AK4-2	lnc-EIF2AK4-2:4	ENSG00000248508	XLOC_011219	NA	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.44;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.14;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40"	NA	inter
CUST_29780_PI429285431	5.4698906	P	5.96266	P	0.710659604159176	0	lncRNA	31543-1_{1..261}	n333478|BC028052|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091465|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091465|0.9526100|-0.0337906	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333478|BC028052|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091465|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091465|0.9526100|-0.0337906	chr1	228353505	228353765	+	NA	NA	NA	NA	GJC2	NA	chr1:228343505-228347527	inner
LNCA_21_P0000926	6.2402744	P	6.724506	P	0.714877722584193	0	lncRNA	BC144024	NA	BC144024	NA	NA	LOC100130417	uncharacterized LOC100130417	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000670), lincRNA [TCONS_00000073]"	chr1:854237-853469	hs|1p36.33	Agilent_HUMAN_G3V2	BC144024	BC144024	chr1	   853469	   854237	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_551_PI429285431	0.91404265	A	0.91822195	A	0.997107321867465	0	lncRNA	543-1_{1..527}	"transcript_id ""ENST00000415754.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415754.1"" | genecode_v17"	chr1	208902033	208902559	+	ENSG00000232812.1	ENST00000415754.1	RP11-459K23.2	RP11-459K23.2-001	NA	NA	NA	inter
LNCA_21_P0006696	0.9215729	A	1.0950756	A	0.886687289487462	0	lncRNA	ENST00000425365	NA	NA	NA	NA	XLOC_008557	NA	ENST00000425365	NA	NA	"BROAD Institute lincRNA (XLOC_008557), lincRNA [TCONS_00017856]"	chr10:92225685-92225744	hs|10q23.31	Agilent_HUMAN_G3V2	ENST00000425365	ENST00000425365	chr10	 92225685	 92225744	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28034_PI429285431	1.8009944	A	0.91568893	A	1.84715568880185	0	lncRNA	29648-1_{1..573}	n325295|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326578|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326578|-0.8719360|-0.1852036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325295|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326578|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326578|-0.8719360|-0.1852036	chr2	 62670893	 62671465	-	NA	NA	NA	NA	TMEM17	"hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chr2:62727356-62733604"	NA	inner
CUST_33212_PI429285431	1.4782554	A	2.5782712	A	0.4665113866358	0	lncRNA	34803-1_{1..1851}	n339910|AK091108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2359|NULL|-0.9980570|-0.3021593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339910|AK091108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2359|NULL|-0.9980570|-0.3021593	chr18	 66382549	 66384399	+	NA	NA	NA	NA	CCDC102B	NA	chr18:66382491-66432236	inner
LNCA_21_P0009841	3.7023625	P	4.1205635	P	0.748357223071365	0	lncRNA	ENST00000444436	NA	NA	NA	NA	XLOC_013521	NA	ENST00000444436	THC2726712	NA	"BROAD Institute lincRNA (XLOC_013521), lincRNA [TCONS_00027927]"	chr20:38414488-38414547	hs|20q12	Agilent_HUMAN_G3V2	ENST00000444436	ENST00000444436	chr20	 38414488	 38414547	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33699_PI429285431	5.434496	P	5.8458757	P	0.751903957563552	0	lncRNA	35260-1_{1..1580}	n340476|CR602093|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2937|NULL|6.7400000|-0.1270801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340476|CR602093|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2937|NULL|6.7400000|-0.1270801	chr5	 58335034	 58336613	+	NA	NA	NA	NA	PDE4D	NA	chr5:58325034-58346614	inner
CUST_24370_PI429285431	1.0638841	A	1.0961753	A	0.977866076677087	0	lncRNA	25923-1_{1..1083}	lnc-MAT2B-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAT2B-3:3	chr5	163969852	163970934	+	lnc-MAT2B-3	lnc-MAT2B-3:3	ENSG00000241956.5	CTC-340A15.2	NA	NA	NA	inter
CUST_1988_PI429285431	0.9077678	A	0.896791	A	1.00763755644597	0	lncRNA	1979-1_{1..490}	"transcript_id ""ENST00000506984.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506984.1"" | genecode_v17"	chr4	176379440	176379929	-	ENSG00000249945.1	ENST00000506984.1	RP11-598D14.1	RP11-598D14.1-001	NA	NA	NA	inter
CUST_25580_PI429285431	10.7425165	P	10.991743	P	0.841347382197275	0	lncRNA	27110-1_{1..544}	lnc-TMEM151A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM151A-1:1	chr11	 66086305	 66086848	+	lnc-TMEM151A-1	lnc-TMEM151A-1:1	ENSG00000254458.1	RP11-867G23.13	CD248	NA	chr11:66081958-66084515	inter
CUST_23115_PI429285431	1.7954564	A	0.90530294	A	1.8533732572883	0	lncRNA	24686-1_{1..692}	lnc-AC106873.4.1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC106873.4.1-2:4	chr7	116211172	116211863	-	lnc-AC106873.4.1-2	lnc-AC106873.4.1-2:4	ENSG00000243220.1	AC006159.4	CAV1	NA	chr7:116201172-116201239	inter
CUST_29333_PI429285431	8.590641	P	8.64216	P	0.964919838895823	0	lncRNA	31085-1_{1..443}	n332574|AK315410|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000434276|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000434276|0.9254000|-0.1230631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332574|AK315410|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000434276|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000434276|0.9254000|-0.1230631	chr21	 40715038	 40715480	-	NA	NA	NA	NA	HMGN1	NA	chr21:40714241-40721047	inner
CUST_39771_PI429285431	4.9557595	P	2.4092588	A	5.84215526217115	0	lncRNA	40687-2_{3001..3782}	n405971|NR_003253|lncRNA|Homosapiens||RefGeneNoncode|NR_003253||8.2630100|-0.1428708	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405971|NR_003253|lncRNA|Homosapiens||RefGeneNoncode|NR_003253||8.2630100|-0.1428708	chr22	 20751479	 20752260	+	NA	NA	NA	NA	USP41	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30chr22:20738479-20742433"	NA	inner
CUST_37377_PI429285431	2.7553957	A	2.440352	A	1.24404933564371	0	lncRNA	38481-1_{1..411}	n345826|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1375|NULL|-1.3519400|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345826|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1375|NULL|-1.3519400|-1.0000000	chrX	 64771694	 64772104	+	NA	NA	NA	NA	NA	"hg19_refFlat_FRMD8:range=chr11:65154508-651788315'pad=0,hg19_refFlat_FRMD8:range=chr11:65154508-651788315'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70"	NA	inter
CUST_40778_PI429285431	0.8928547	A	1.1865034	A	0.815836127375962	0	lncRNA	41494-2_{3001..6000}	n410507|NR_037649|lncRNA|Homosapiens||RefGeneNoncode|NR_037649||6.5885300|-0.3371776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410507|NR_037649|lncRNA|Homosapiens||RefGeneNoncode|NR_037649||6.5885300|-0.3371776	chr2	135679391	135682390	+	NA	NA	NA	NA	YSK4	NA	chr2:135722273-135726915	inter
CUST_6617_PI429285431	14.07487	P	14.247134	P	0.887448927371606	0	lncRNA	6564-1_{1..3000}	"transcript_id ""ENST00000593393.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593393.1"" | genecode_v17"	chr19	 58915605	 58918604	-	ENSG00000232098.2	ENST00000593393.1	CTD-2619J13.14	CTD-2619J13.14-001	RPS5	NA	chr19:58905605-58906171	inter
CUST_27038_PI429285431	0.90411687	A	0.92114854	A	0.988263956920685	0	lncRNA	28569-1_{1..927}	n324144|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051925|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051925|-1.2095800|-0.4679322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324144|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051925|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051925|-1.2095800|-0.4679322	chr9	 22103676	 22104602	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006107	0.91644037	A	2.1254416	A	0.432567976497411	0	lncRNA	ENST00000444800	NA	NA	NA	NA	XLOC_007852	NA	ENST00000444800	THC2666508	NA	"BROAD Institute lincRNA (XLOC_007852), lincRNA [TCONS_00015880]"	chr9:128506095-128506036	hs|9q33.3	Agilent_HUMAN_G3V2	ENST00000444800	ENST00000444800	chr9	128506036	128506095	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20121_PI429285431	1.5316476	A	0.9139412	A	1.53443379465263	0	lncRNA	21769-1_{1..426}	lnc-NAP1L3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NAP1L3-2:1	chrX	 90689902	 90690327	-	lnc-NAP1L3-2	lnc-NAP1L3-2:1	ENSG00000234161.1	PABPC5-AS1	PABPC5	NA	chrX:90679902-90693583	inner
CUST_51004_PI429285431	0.9076362	A	2.0894783	A	0.440788319687095	0	lncRNA	54648-1_{1..1278}	hg19_lincRNAsTranscripts_TCONS_l2_00007049 range=chr13:19520899-19532561 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007049 range=chr13:19520899-19532561 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 19520899	 19522176	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42511_PI429285431	8.37738	P	8.611283	P	0.850331330404371	0	lncRNA	45295-1_{1..125}	ENST00000408716 ncrna:snoRNA chromosome:GRCh37:1:203698709:203698833:1 gene:ENSG00000221643 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408716 ncrna:snoRNA chromosome:GRCh37:1:203698709:203698833:1 gene:ENSG00000221643 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	203698709	203698833	+	ENSG00000221643	ENST00000408716	NA	NA	ATP2B4	NA	chr1:203688709-203708833	inner
CUST_21945_PI429285431	5.489354	P	5.336192	P	1.11200401726353	0	lncRNA	23553-1_{1..383}	lnc-TMED5-1:27	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMED5-1:27	chr1	 93780773	 93781155	-	lnc-TMED5-1	lnc-TMED5-1:27	ENSG00000223745.1	RP4-717I23.3	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0,hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80"	NA	inter
CUST_6952_PI429285431	2.673821	A	2.3189654	A	1.27885757343767	0	lncRNA	6901-1_{1..482}	"transcript_id ""ENST00000454253.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454253.1"" | genecode_v17"	chr22	 25608709	 25609190	+	ENSG00000236641.1	ENST00000454253.1	CTA-221G9.7	CTA-221G9.7-001	CRYBB2	NA	chr22:25615612-25619652	inter
CUST_6105_PI429285431	3.906536	P	2.9577093	A	1.9303021632755	0	lncRNA	6031-1_{1..745}	"transcript_id ""ENST00000577906.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577906.1"" | genecode_v17"	chr18	 19210099	 19210843	+	ENSG00000263350.1	ENST00000577906.1	RP11-13N13.2	RP11-13N13.2-001	SNRPD1	NA	chr18:19200099-19210208	inner
CUST_1919_PI429285431	0.9117107	A	0.9192752	A	0.994770410318545	0	lncRNA	1910-1_{1..866}	"transcript_id ""ENST00000502606.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502606.1"" | genecode_v17"	chr4	139694704	139695569	+	ENSG00000250501.2	ENST00000502606.1	RP11-98O2.1	RP11-98O2.1-002	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20"	NA	inter
CUST_21596_PI429285431	0.9013381	A	0.9130589	A	0.991908672969773	0	lncRNA	23209-1_{1..547}	lnc-CRHR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CRHR2-1:1	chr7	 30842684	 30843230	-	lnc-CRHR2-1	lnc-CRHR2-1:1	ENSG00000229263.1	AC004691.5	FAM188B	NA	chr7:30832684-30853026	inter
LNCA_21_P0012432	0.91997695	A	0.9212197	A	0.999138962247289	0	lncRNA	ENST00000455623	NA	NA	NA	NA	XLOC_l2_010097	NA	ENST00000455623	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010097), lincRNA [TCONS_l2_00020062]"	chr3:6673590-6673531	hs|3p26.1	Agilent_HUMAN_G3V2	ENST00000455623	ENST00000455623	chr3	  6673531	  6673590	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10240_PI429285431	0.9142277	A	1.5188866	A	0.657626846084655	0	lncRNA	11764-1_{1..300}	lnc-ID4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ID4-2:1	chr6	 19539003	 19539302	+	lnc-ID4-2	lnc-ID4-2:1	XLOC_005192	linc-ID4-2	NA	NA	NA	inter
CUST_1816_PI429285431	0.9863026	A	1.0849718	A	0.933894055818597	0	lncRNA	1803-1_{1..394}	"transcript_id ""ENST00000515670.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515670.1"" | genecode_v17"	chr4	 84154665	 84155058	-	ENSG00000250057.1	ENST00000515670.1	RP11-576N17.5	RP11-576N17.5-001	NA	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.90;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50"	NA	inter
CUST_20586_PI429285431	0.9039353	A	0.8989701	A	1.00344754353569	0	lncRNA	22226-2_{3001..3100}	lnc-CTDSP2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTDSP2-4:2	chr12	 58491697	 58491796	-	lnc-CTDSP2-4	lnc-CTDSP2-4:2	ENSG00000264432.1	RP11-489P6.1	NA	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-61.90;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-59.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30"	NA	inter
CUST_51839_PI429285431	12.666066	P	12.788385	P	0.918709721482932	0	lncRNA	55394-1_{1..994}	hg19_lincRNAsTranscripts_TCONS_l2_00013110 range=chr19:40448564-40449653 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013110 range=chr19:40448564-40449653 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 40448564	 40449557	-	NA	NA	NA	NA	FCGBP	NA	chr19:40438564-40440533	inter
CUST_23380_PI429285431	0.9139956	A	0.906484	A	1.00522022248951	0	lncRNA	24948-1_{1..374}	lnc-PLA2G7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLA2G7-2:1	chr6	 46655671	 46656044	-	lnc-PLA2G7-2	lnc-PLA2G7-2:1	ENSG00000242973.2	RP11-446F17.3	TDRD6	"hg19_refFlat_TDRD6:range=chr6:46655866-466696245'pad=0,hg19_refFlat_TDRD6:range=chr6:46655866-466696245'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30chr6:46655612-46665902"	NA	inner
LNCA_21_P0005391	3.088258	P	3.3522742	P	0.832766419706974	0	lncRNA	TCONS_00013490	NA	NA	NA	NA	XLOC_006133	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006133), lincRNA [TCONS_00013490]"	chr7:65960517-65960576	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_00013490	TCONS_00013490	chr7	 65960517	 65960576	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00320478	4.793657	P	4.939224	P	0.904024013232411	0	lncRNA	ENST00000449463	NA	NA	NA	NA	XLOC_005770	NA	ENST00000449463	NA	NA	"BROAD Institute lincRNA (XLOC_005770), lincRNA [TCONS_00011521]"	chr6:79314254-79314195	hs|6q14.1	Agilent_HUMAN_G3V2	ENST00000449463	ENST00000449463	chr6	 79314195	 79314254	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49445_PI429285431	3.016106	A	2.0381215	A	1.96971172352544	0	lncRNA	53244-1_{1..514}	hg19_lincRNAsTranscripts_TCONS_l2_00022707 range=chr5:180708380-180720947 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022707 range=chr5:180708380-180720947 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	180708380	180708893	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17088_PI429285431	3.7840977	P	4.037073	P	0.839164004088392	0	lncRNA	18796-1_{1..281}	lnc-DSC3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DSC3-2:1	chr18	 27755706	 27755986	-	lnc-DSC3-2	lnc-DSC3-2:1	XLOC_012800	linc-CDH2-1	NA	NA	NA	inter
CUST_42016_PI429285431	4.2830462	P	4.1049356	P	1.13140119508818	0	lncRNA	43880-1_{1..82}	ENST00000408410 ncrna:miRNA chromosome:GRCh37:3:41690747:41690828:1 gene:ENSG00000221337 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408410 ncrna:miRNA chromosome:GRCh37:3:41690747:41690828:1 gene:ENSG00000221337 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 41690747	 41690828	+	ENSG00000221337	ENST00000408410	NA	NA	ULK4	NA	chr3:41680747-41700828	inner
CUST_734_PI429285431	1.9953252	A	1.9606454	A	1.02432945225656	0	lncRNA	727-1_{1..1036}	"transcript_id ""ENST00000418358.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418358.1"" | genecode_v17"	chr2	  8683722	  8684757	-	ENSG00000231435.1	ENST00000418358.1	AC011747.3	AC011747.3-001	NA	NA	NA	inter
CUST_9835_PI429285431	0.89320695	A	0.89069813	A	1.00174049441472	0	lncRNA	11355-2_{3001..5087}	lnc-GDF10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GDF10-2:1	chr10	 48535564	 48537650	-	lnc-GDF10-2	lnc-GDF10-2:1	XLOC_008811	linc-GDF10-1	NA	NA	NA	inter
LNCA_21_P0002173	0.9146832	A	0.9109674	A	1.00257891599111	0	lncRNA	TCONS_00003581	NA	NA	NA	NA	XLOC_001356	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001356), lincRNA [TCONS_00003581]"	chr2:13414822-13414881	hs|2p24.3	Agilent_HUMAN_G3V2	TCONS_00003581	TCONS_00003581	chr2	 13414822	 13414881	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17943_PI429285431	1.1812913	A	1.0958034	A	1.06104651231536	0	lncRNA	19674-1_{1..333}	lnc-CLMN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLMN-2:1	chr14	 95805931	 95806263	-	lnc-CLMN-2	lnc-CLMN-2:1	XLOC_011110	linc-CLMN-1	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10"	NA	inter
CUST_23670_PI429285431	1.2131388	A	0.9116067	A	1.23245254723378	0	lncRNA	25235-1_{1..273}	lnc-C10orf71-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C10orf71-2:1	chr10	 50086527	 50086799	+	lnc-C10orf71-2	lnc-C10orf71-2:1	ENSG00000228403.1	RP11-563N6.6	WDFY4	NA	chr10:50076527-50096694	inner
CUST_22176_PI429285431	0.8984638	A	0.89999956	A	0.998936058673327	0	lncRNA	23778-1_{1..314}	lnc-C1orf27-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf27-1:1	chr1	186420762	186421075	+	lnc-C1orf27-1	lnc-C1orf27-1:1	ENSG00000229739.1	RP11-295K2.3	PDC	NA	chr1:186412698-186430239	inter
CUST_2021_PI429285431	4.8497653	P	5.157671	P	0.807813577632249	0	lncRNA	2012-1_{1..437}	"transcript_id ""ENST00000505178.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505178.1"" | genecode_v17"	chr4	189678833	189679269	+	ENSG00000249269.1	ENST00000505178.1	RP11-756P10.4	RP11-756P10.4-001	NA	NA	NA	inter
CUST_46657_PI429285431	5.5422173	P	5.0953836	P	1.36304547946149	0	lncRNA	50827-3_{6001..8644}	"gi|388454231|ref|NR_049763.1| Homo sapiens CCR4-NOT transcription complex, subunit 1 (CNOT1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388454231|ref|NR_049763.1| Homo sapiens CCR4-NOT transcription complex, subunit 1 (CNOT1), transcript variant 4, non-coding RNA"	Chr16	 58559850	 58562493	-	23019	NR_049763.1	NA	NA	NA	NA	NA	inter
CUST_31501_PI429285431	2.0459368	A	1.4024932	A	1.56205321164197	0	lncRNA	33264-1_{1..3000}	n337983|BC034424|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|369|NULL|-1.2207100|-0.2239178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337983|BC034424|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|369|NULL|-1.2207100|-0.2239178	chr15	 72571207	 72574206	+	NA	NA	NA	NA	HEXA	"hg19_refFlat_HEXA:range=chr15:72636418-726683135'pad=0,hg19_refFlat_HEXA:range=chr15:72636418-726683135'pad=0 3'pad=0 strand=- repeatMasking=none,-98.70chr15:72635778-72654135"	NA	inner
CUST_9262_PI429285431	1.9989543	A	1.0645673	A	1.91107844690595	0	lncRNA	10769-1_{1..3000}	lnc-NOD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NOD1-1:1	chr7	 31250979	 31253978	-	lnc-NOD1-1	lnc-NOD1-1:1	ENSG00000251425	ENST00000507825	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60"	NA	inter
CUST_50238_PI429285431	5.7670403	P	5.6575804	P	1.07882428275155	0	lncRNA	53962-1_{1..642}	hg19_lincRNAsTranscripts_TCONS_l2_00029336 range=chr9:67330750-67340129 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029336 range=chr9:67330750-67340129 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 67330750	 67331391	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49894_PI429285431	0.89579415	A	1.4053894	A	0.702419474940024	0	lncRNA	53643-1_{1..871}	hg19_lincRNAsTranscripts_TCONS_l2_00026705 range=chr7:76712697-76728359 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026705 range=chr7:76712697-76728359 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 76712697	 76713567	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40276_PI429285431	1.7913442	A	1.8234733	A	0.977975955058874	0	lncRNA	41085-1_{1..3000}	n408223|NR_028387_2|lncRNA|Homosapiens||RefGeneNoncode|NR_028387_2||-1.0205100|-0.2530743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408223|NR_028387_2|lncRNA|Homosapiens||RefGeneNoncode|NR_028387_2||-1.0205100|-0.2530743	chr6	  4491673	  4494672	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30"	NA	inter
CUST_42838_PI429285431	6.0333905	P	6.3040233	P	0.828955866507883	0	lncRNA	45879-1_{1..130}	ENST00000363664 ncrna:snoRNA chromosome:GRCh37:6:133138358:133138487:1 gene:ENSG00000200534 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363664 ncrna:snoRNA chromosome:GRCh37:6:133138358:133138487:1 gene:ENSG00000200534 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	133138358	133138487	+	ENSG00000200534	ENST00000363664	NA	NA	RPS12	NA	chr6:133135708-133138703	inner
CUST_2232_PI429285431	1.6086793	A	1.2094686	A	1.31878620402481	0	lncRNA	2224-1_{1..602}	"transcript_id ""ENST00000503349.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503349.1"" | genecode_v17"	chr5	 86263138	 86263739	+	ENSG00000249061.1	ENST00000503349.1	RP11-72L22.1	RP11-72L22.1-001	NA	NA	NA	inter
CUST_9577_PI429285431	1.7721072	A	2.611566	A	0.558853173010811	0	lncRNA	11093-1_{1..533}	lnc-C17orf51-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C17orf51-2:1	chr17	 21405059	 21405591	-	lnc-C17orf51-2	lnc-C17orf51-2:1	XLOC_012421	linc-C17orf103	C17orf51	NA	chr17:21407844-21415497	inter
CUST_4260_PI429285431	4.555265	P	4.8194366	P	0.832676723043161	0	lncRNA	4217-1_{1..1027}	"transcript_id ""ENST00000567167.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567167.1"" | genecode_v17"	chr12	 52217287	 52218313	+	ENSG00000260473.1	ENST00000567167.1	RP11-923I11.4	RP11-923I11.4-001	FIGNL2	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70chr12:52211676-52225701"	NA	inner
CUST_49799_PI429285431	1.5807841	A	1.5637857	A	1.01185207884644	0	lncRNA	53556-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00025918 range=chr7:63157086-63167629 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025918 range=chr7:63157086-63167629 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 63157086	 63160085	+	NA	NA	NA	NA	LOC402269	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40chr7:63147086-63161735"	NA	inter
CUST_32925_PI429285431	1.7596967	A	2.78133	A	0.492558402590135	0	lncRNA	34548-3_{6001..6571}	n339596|BX648266|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2040|NULL|-0.9052230|-0.3271649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339596|BX648266|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2040|NULL|-0.9052230|-0.3271649	chr20	 21134343	 21134913	+	NA	NA	NA	NA	PLK1S1	NA	chr20:21118343-21144889	inner
LNCA_21_P0009212	3.9063773	P	2.5153515	A	2.62265092939583	0	lncRNA	TCONS_00025273	NA	NA	NA	NA	XLOC_012079	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012079), lincRNA [TCONS_00025273]"	chr17:2616078-2616137	hs|17p13.3	Agilent_HUMAN_G3V2	TCONS_00025273	TCONS_00025273	chr17	  2616078	  2616137	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49267_PI429285431	1.8800516	A	1.0867462	A	1.73304053638304	0	lncRNA	53086-1_{1..285}	hg19_lincRNAsTranscripts_TCONS_l2_00022506 range=chr5:124372532-124400970 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022506 range=chr5:124372532-124400970 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	124372532	124372816	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21642_PI429285431	8.043258	P	8.169979	P	0.915910795507151	0	lncRNA	23254-1_{1..441}	lnc-RP11-392O18.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-392O18.1.1-2:1	chr3	150480124	150480564	+	lnc-RP11-392O18.1.1-2	lnc-RP11-392O18.1.1-2:1	ENSG00000244265.1	SIAH2-AS1	SIAH2	"hg19_refFlat_SIAH2:range=chr3:150459928-1504806365'pad=0,hg19_refFlat_SIAH2:range=chr3:150459928-1504806365'pad=0 3'pad=0 strand=- repeatMasking=none,-101.40chr3:150470124-150481263"	NA	inner
CUST_23153_PI429285431	0.892232	A	0.89209807	A	1.00009283751103	0	lncRNA	24724-1_{1..397}	lnc-RP11-1085N6.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-1085N6.3.1-1:1	chr14	 57115337	 57115733	-	lnc-RP11-1085N6.3.1-1	lnc-RP11-1085N6.3.1-1:1	ENSG00000258428.1	RP11-1085N6.2	C14orf101	NA	chr14:57105337-57116233	inner
CUST_44894_PI429285431	3.9156423	P	4.6872277	P	0.58577340529383	0	lncRNA	49416-1_{1..3000}	"gi|336285458|ref|NR_038831.1| Homo sapiens HOXA cluster antisense RNA 3 (HOXA-AS3), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|336285458|ref|NR_038831.1| Homo sapiens HOXA cluster antisense RNA 3 (HOXA-AS3), transcript variant 1, non-coding RNA"	Chr7	 27186782	 27189781	+	100133311	NR_038831.1	NA	NA	NA	"hg19_refFlat_HOXB6:range=chr17:46673775-466755125'pad=0,hg19_refFlat_HOXB6:range=chr17:46673775-466755125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_HOXC6:range=chr12:54422552-544237465'pad=0,hg19_refFlat_HOXC6:range=chr12:54422552-544237465'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_HOXC6:range=chr12:54422306-544237465'pad=0,hg19_refFlat_HOXC6:range=chr12:54422306-544237465'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_HOXB4:range=chr17:46654084-466556815'pad=0,hg19_refFlat_HOXB4:range=chr17:46654084-466556815'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_HOXA6:range=chr7:27185277-271873685'pad=0,hg19_refFlat_HOXA6:range=chr7:27185277-271873685'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_HOXA7:range=chr7:27194528-271961645'pad=0,hg19_refFlat_HOXA7:range=chr7:27194528-271961645'pad=0 3'pad=0 strand=- repeatMasking=none,-106.00;hg19_refFlat_HMX1:range=chr4:8869419-88733405'pad=0,hg19_refFlat_HMX1:range=chr4:8869419-88733405'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_HOXB5:range=chr17:46669571-466710445'pad=0,hg19_refFlat_HOXB5:range=chr17:46669571-466710445'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_20198_PI429285431	4.9891567	P	5.1751604	P	0.879037306490643	0	lncRNA	21841-1_{1..379}	lnc-GNPTG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNPTG-1:1	chr16	  1461930	  1462308	+	lnc-GNPTG-1	lnc-GNPTG-1:1	ENSG00000260132.1	LA16c-312E8.2	UNKL	NA	chr16:1451930-1464705	inner
CUST_43943_PI429285431	6.617179	P	4.143864	P	5.55318323329359	0	lncRNA	48653-1_{1..1464}	"gi|397138973|ref|XR_109878.2| PREDICTED: Homo sapiens uncharacterized LOC100506748 (LOC100506748), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138973|ref|XR_109878.2| PREDICTED: Homo sapiens uncharacterized LOC100506748 (LOC100506748), misc_RNA"	NA	NA	NA	NA	NA	XR_109878.2	NA	NA	NA	"hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-24.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40"	NA	Unknown
CUST_29453_PI429285431	1.0838534	A	1.0293975	A	1.03846738041294	0	lncRNA	31210-1_{1..472}	n332856|AF075113|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066135|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066135|-1.4704500|-0.3580449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332856|AF075113|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066135|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066135|-1.4704500|-0.3580449	chr10	104049241	104049712	+	NA	NA	NA	NA	GBF1	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50chr10:104039241-104059713"	NA	inner
CUST_6067_PI429285431	5.1926074	P	4.6909156	P	1.41587293585582	0	lncRNA	5991-1_{1..1875}	"transcript_id ""ENST00000581067.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000581067.1"" | genecode_v17"	chr18	  5236723	  5238597	-	ENSG00000264575.1	ENST00000581067.1	LINC00526	LINC00526-001	NA	NA	NA	inter
CUST_31300_PI429285431	6.822421	P	7.2862954	P	0.725036534854824	0	lncRNA	33085-1_{1..233}	n337764|AF089811|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|146|NULL|-0.9989730|-0.4519188	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337764|AF089811|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|146|NULL|-0.9989730|-0.4519188	chr15	 51593102	 51593334	-	NA	NA	NA	NA	CYP19A1	NA	chr15:51583102-51603303	inner
LNCA_21_P0012923	0.90230775	A	0.8943966	A	1.0054986537238	0	lncRNA	ENST00000512693	NA	AL833206	NA	Hs.532104	XLOC_l2_012173	NA	ENST00000512693	THC2620631	NA	"BROAD Institute lincRNA (XLOC_l2_012173), lincRNA [TCONS_l2_00023049]"	chr5:108658884-108658825	hs|5q21.3	Agilent_HUMAN_G3V2	ENST00000512693	ENST00000512693	chr5	108658825	108658884	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37188_PI429285431	0.9038505	A	0.9107598	A	0.995222287935273	0	lncRNA	38300-2_{3001..4174}	n345619|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1168|NULL|-1.3382700|-0.3289288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345619|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1168|NULL|-1.3382700|-0.3289288	chr4	   251107	   252280	-	NA	NA	NA	NA	ZNF732	"hg19_refFlat_ZNF729:range=chr19:22469328-224999785'pad=0,hg19_refFlat_ZNF729:range=chr19:22469328-224999785'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90;hg19_refFlat_ZNF595:range=chr4:53383-873405'pad=0,hg19_refFlat_ZNF595:range=chr4:53383-873405'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90chr4:264464-270058"	NA	inter
CUST_43839_PI429285431	2.544773	A	2.1721191	A	1.29473235758196	0	lncRNA	48563-1_{1..969}	"gi|410170430|ref|XR_132708.3| PREDICTED: Homo sapiens hCG2040054 (LOC644093), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410170430|ref|XR_132708.3| PREDICTED: Homo sapiens hCG2040054 (LOC644093), misc_RNA"	NA	NA	NA	NA	NA	XR_132708.3	NA	NA	NA	NA	NA	Unknown
CUST_29076_PI429285431	2.2048376	A	2.259521	A	0.962805708015028	0	lncRNA	30807-2_{3001..3871}	n326569|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026413|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026413|-1.2586300|-0.4318614	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326569|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026413|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026413|-1.2586300|-0.4318614	chr1	 73547440	 73548310	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22763_PI429285431	1.848541	A	1.2656286	A	1.49786998145744	0	lncRNA	24345-1_{1..670}	lnc-ABCC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ABCC3-1:1	chr17	 48772721	 48773390	+	lnc-ABCC3-1	lnc-ABCC3-1:1	ENSG00000262967.1	RP11-294J22.6	ABCC3	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.51;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-17.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10chr17:48762721-48769063"	NA	inner
CUST_17343_PI429285431	2.9585695	A	3.3664465	P	0.753731713022365	0	lncRNA	19060-1_{1..339}	lnc-TLR4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TLR4-2:1	chr9	120546614	120546952	+	lnc-TLR4-2	lnc-TLR4-2:1	XLOC_007537	linc-CEP110-15	NA	NA	NA	inter
CUST_18860_PI429285431	7.501336	P	7.2539163	P	1.18708208607516	0	lncRNA	20552-1_{1..1638}	lnc-RAB23-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RAB23-4:2	chr6	 58287599	 58289236	-	lnc-RAB23-4	lnc-RAB23-4:2	ENSG00000215190	GUSBP4	NA	NA	NA	inter
CUST_49077_PI429285431	1.4020767	A	0.89481694	A	1.42134793655668	0	lncRNA	52901-1_{1..2353}	hg19_lincRNAsTranscripts_TCONS_l2_00020391 range=chr4:6676004-6678711 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020391 range=chr4:6676004-6678711 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	  6676004	  6678356	+	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00"	NA	inter
CUST_10045_PI429285431	0.89856136	A	0.9038763	A	0.996322742057893	0	lncRNA	11570-4_{9001..9327}	lnc-DR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DR1-1:1	chr1	 93806269	 93806595	+	lnc-DR1-1	lnc-DR1-1:1	XLOC_000294	linc-DR1	DR1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60chr1:93811478-93815355"	NA	inter
CUST_43856_PI429285431	2.7793021	A	2.9313653	A	0.899962504360903	0	lncRNA	48577-1_{1..742}	"gi|310118938|ref|XR_109943.1| PREDICTED: Homo sapiens uncharacterized LOC100507073 (LOC100507073), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310118938|ref|XR_109943.1| PREDICTED: Homo sapiens uncharacterized LOC100507073 (LOC100507073), misc_RNA"	Chr2	 66918545	 66919286	+	100507073	XR_109943.1	NA	NA	NA	NA	NA	inter
LNCA_33_P3311165	1.8890574	A	0.90265584	A	1.98123712502834	0	lncRNA	XR_111802	XR_111802	XR_111802	   400658	Hs.451549	FLJ44313	FLJ44313 protein	ENST00000532511	THC2483898	NA	"PREDICTED: Homo sapiens FLJ44313 protein (FLJ44313), miscRNA [XR_111802]"	chr18:74209887-74209946	hs|18q23	Agilent_HUMAN_G3V2	XR_111802	XR_111802	chr18	 74209887	 74209946	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51706_PI429285431	11.497765	P	11.593168	P	0.936010747248879	0	lncRNA	55263-1_{1..1422}	hg19_lincRNAsTranscripts_TCONS_l2_00011961 range=chr18:11619234-11639498 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011961 range=chr18:11619234-11639498 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 11619234	 11620655	-	NA	NA	NA	NA	AMAC1L1	NA	chr18:11609595-11610611	inter
CUST_12799_PI429285431	0.9874298	A	0.8960087	A	1.0654191371082	0	lncRNA	14426-1_{1..219}	lnc-GYG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GYG1-1:1	chr3	148673369	148673587	+	lnc-GYG1-1	lnc-GYG1-1:1	XLOC_002863	linc-GYG1-2	NA	NA	NA	inter
CUST_7215_PI429285431	0.8921678	A	0.88953507	A	1.00182653546411	0	lncRNA	7657-1_{1..340}	"transcript_id ""ENST00000364845.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000364845.1"" | genecode_v17"	chr5	 17345725	 17346064	+	ENSG00000201715.1	ENST00000364845.1	RN7SKP133	RN7SKP133-201	NA	NA	NA	inter
LNCA_21_P0005255	1.8110473	A	1.7196527	A	1.06539956724275	0	lncRNA	ENST00000446053	NA	NA	NA	NA	XLOC_006220	NA	ENST00000446053	NA	NA	"BROAD Institute lincRNA (XLOC_006220), lincRNA [TCONS_00013068]"	chr7:121858342-121858401	hs|7q31.32	Agilent_HUMAN_G3V2	ENST00000446053	ENST00000446053	chr7	121858342	121858401	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4229_PI429285431	0.9237241	A	0.90568995	A	1.01257877579493	0	lncRNA	4188-1_{1..559}	"transcript_id ""ENST00000417422.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417422.1"" | genecode_v17"	chr12	 40560054	 40560612	+	ENSG00000223914.1	ENST00000417422.1	AC079630.2	AC079630.2-002	NA	NA	NA	inter
CUST_47658_PI429285431	5.33646	P	4.936449	P	1.31951797155632	0	lncRNA	51642-1_{1..3000}	"gi|297374780|ref|NR_033700.1| Homo sapiens fragile X mental retardation 1 (FMR1), transcript variant ISO10, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|297374780|ref|NR_033700.1| Homo sapiens fragile X mental retardation 1 (FMR1), transcript variant ISO10, non-coding RNA"	NW_004070890.2	  3436342	  3439341	+	2332	NR_033700.1	NA	NA	NA	NA	NA	Unknown
CUST_27691_PI429285431	0.8970569	A	0.90198416	A	0.996590509182162	0	lncRNA	29269-1_{1..377}	n324898|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158058|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158058|-1.1495600|-0.3501274	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324898|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158058|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158058|-1.1495600|-0.3501274	chr21	 17157065	 17157441	-	NA	NA	NA	NA	USP25	NA	chr21:17147065-17177882	inner
CUST_46038_PI429285431	2.2522488	A	1.8555424	A	1.31649897670583	0	lncRNA	50316-1_{1..1619}	"gi|227497625|ref|NR_027500.1| Homo sapiens BCDIN3D antisense RNA 1 (BCDIN3D-AS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|227497625|ref|NR_027500.1| Homo sapiens BCDIN3D antisense RNA 1 (BCDIN3D-AS1), transcript variant 3, non-coding RNA"	Chr12	 50222326	 50223944	+	100286844	NR_027500.1	NA	NA	NA	"hg19_refFlat_BCDIN3D:range=chr12:50232154-502368705'pad=0,hg19_refFlat_BCDIN3D:range=chr12:50232154-502368705'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10"	NA	inter
CUST_14776_PI429285431	0.9132066	A	0.91417867	A	0.999326439364071	0	lncRNA	16437-1_{1..469}	lnc-TOX-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TOX-1:1	chr8	 60506137	 60506605	-	lnc-TOX-1	lnc-TOX-1:1	XLOC_007091	linc-TOX	NA	NA	NA	inter
CUST_17916_PI429285431	1.6620239	A	1.7339168	A	0.951388901076749	0	lncRNA	19647-1_{1..1573}	lnc-NETO1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NETO1-1:4	chr18	 70931475	 70933047	-	lnc-NETO1-1	lnc-NETO1-1:4	XLOC_012877	linc-NETO1-3	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30"	NA	inter
LNCA_21_P0012601	3.2622347	P	4.4632306	P	0.434974912509269	0	lncRNA	ENST00000507916	NA	NA	NA	NA	XLOC_l2_010751	NA	ENST00000507916	THC2750781	NA	"BROAD Institute lincRNA (XLOC_l2_010751), lincRNA [TCONS_l2_00020648]"	chr4:90612501-90640980	hs|4q22.1	Agilent_HUMAN_G3V2	ENST00000507916	ENST00000507916	chr4	 90612501	 90640980	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46788_PI429285431	8.443077	P	7.992849	P	1.36625615947949	0	lncRNA	50934-1_{1..1071}	"gi|95147323|ref|NR_003064.2| Homo sapiens peptide YY, 2 (pseudogene) (PYY2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|95147323|ref|NR_003064.2| Homo sapiens peptide YY, 2 (pseudogene) (PYY2), non-coding RNA"	Chr17	 26553589	 26554659	+	23615	NR_003064.2	NA	NA	NA	NA	NA	inter
CUST_18586_PI429285431	3.4920926	P	4.269585	P	0.583379906055836	0	lncRNA	20293-1_{1..681}	lnc-BX255923.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BX255923.1-1:1	chr9	 69149205	 69149885	+	lnc-BX255923.1-1	lnc-BX255923.1-1:1	ENSG00000237543	RP11-58A12.3	NA	NA	NA	inter
LNCA_21_P0004829	1.7502244	A	2.0225158	A	0.828003401759006	0	lncRNA	TCONS_00011669	NA	NA	NA	NA	XLOC_005150	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005150), lincRNA [TCONS_00011669]"	chr6:6759674-6760038	hs|6p25.1	Agilent_HUMAN_G3V2	TCONS_00011669	TCONS_00011669	chr6	  6759674	  6760038	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013014	0.9213791	A	0.90973246	A	1.00810550887956	0	lncRNA	TCONS_l2_00024037	NA	NA	NA	NA	XLOC_l2_012397	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012397), lincRNA [TCONS_l2_00024037]"	chr6:11487895-11487954	hs|6p24.2	Agilent_HUMAN_G3V2	TCONS_l2_00024037	TCONS_l2_00024037	chr6	 11487895	 11487954	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_337_PI429285431	3.457795	P	3.264961	P	1.143006810704	0	lncRNA	330-1_{1..478}	"transcript_id ""ENST00000415532.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415532.1"" | genecode_v17"	chr1	102189298	102189775	+	ENSG00000226715.1	ENST00000415532.1	RP11-411H5.1	RP11-411H5.1-001	NA	NA	NA	inter
CUST_15768_PI429285431	0.9211781	A	0.9029726	A	1.01269904769745	0	lncRNA	17456-1_{1..935}	lnc-RP11-455G16.1.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-455G16.1.1-1:4	chr4	120042792	120043726	-	lnc-RP11-455G16.1.1-1	lnc-RP11-455G16.1.1-1:4	XLOC_004054	linc-SEC24D	NA	NA	NA	inter
CUST_28072_PI429285431	4.2285843	P	4.3193407	P	0.939030289807868	0	lncRNA	29691-1_{1..662}	n325339|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326756|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326756|-0.9450450|-0.2699786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325339|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326756|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326756|-0.9450450|-0.2699786	chr2	 37908255	 37908916	-	NA	NA	NA	NA	CDC42EP3	NA	chr2:37898255-37899326	inter
LNCA_21_P0004698	7.8754697	P	8.152669	P	0.825191405204568	0	lncRNA	ENST00000419064	NA	NA	NA	NA	XLOC_005522	NA	ENST00000419064	NA	NA	"BROAD Institute lincRNA (XLOC_005522), lincRNA [TCONS_00011403]"	chr6:159587177-159588296	hs|6q25.3	Agilent_HUMAN_G3V2	ENST00000419064	ENST00000419064	chr6	159587177	159588296	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44409_PI429285431	2.866922	A	2.767043	A	1.07168357579858	0	lncRNA	49024-1_{1..3000}	"gi|224028263|ref|NR_026968.1| Homo sapiens RPL34 antisense RNA 1 (head to head) (RPL34-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224028263|ref|NR_026968.1| Homo sapiens RPL34 antisense RNA 1 (head to head) (RPL34-AS1), non-coding RNA"	Chr4	109459346	109462345	-	285456	NR_026968.1	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40"	NA	inter
CUST_2739_PI429285431	0.8984537	A	0.9066659	A	0.994323906958116	0	lncRNA	2723-2_{3001..3208}	"transcript_id ""ENST00000567533.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567533.1"" | genecode_v17"	chr7	   164765	   164972	-	ENSG00000261795.1	ENST00000567533.1	RP11-90P13.1	RP11-90P13.1-001	NA	NA	NA	inter
CUST_15594_PI429285431	1.4319887	A	0.9696051	A	1.37781634700535	0	lncRNA	17281-1_{1..1313}	lnc-COIL-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COIL-2:7	chr17	 55156648	 55157960	-	lnc-COIL-2	lnc-COIL-2:7	XLOC_012530	linc-COIL-2	AKAP1	NA	chr17:55162553-55166983	inter
CUST_46361_PI429285431	1.0560834	A	0.9083126	A	1.10785632948634	0	lncRNA	50583-1_{1..859}	"gi|373838737|ref|NR_046094.1| Homo sapiens uncharacterized LOC283587 (LOC283587), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|373838737|ref|NR_046094.1| Homo sapiens uncharacterized LOC283587 (LOC283587), non-coding RNA"	Chr14	 88490894	 88491752	+	283587	NR_046094.1	NA	NA	NA	NA	NA	inter
CUST_25352_PI429285431	0.89330065	A	0.9033531	A	0.99305639164997	0	lncRNA	26882-1_{1..266}	lnc-USP20-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP20-2:1	chr9	132698622	132698887	+	lnc-USP20-2	lnc-USP20-2:1	ENSG00000230684.1	RP11-409K20.6	FNBP1	NA	chr9:132688622-132708820	inner
LNCA_21_P0001284	3.4950874	P	4.3943434	P	0.536163160131808	0	lncRNA	TCONS_00000891	NA	NA	NA	NA	XLOC_000144	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000144), lincRNA [TCONS_00000891]"	chr1:37238869-37238928	hs|1p34.3	Agilent_HUMAN_G3V2	TCONS_00000891	TCONS_00000891	chr1	 37238869	 37238928	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43339_PI429285431	4.6559005	P	4.8765283	P	0.858191906269493	0	lncRNA	48165-2_{3001..5474}	"gi|366393019|ref|NR_039983.2| Homo sapiens uncharacterized LOC729737 (LOC729737), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|366393019|ref|NR_039983.2| Homo sapiens uncharacterized LOC729737 (LOC729737), non-coding RNA"	Chr1	   137773	   140246	-	729737	NR_039983.2	NA	NA	NA	NA	NA	inter
CUST_49639_PI429285431	2.1930304	A	2.526465	A	0.793644815952872	0	lncRNA	53422-1_{1..1697}	hg19_lincRNAsTranscripts_TCONS_l2_00025730 range=chr7:26451808-26536103 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025730 range=chr7:26451808-26536103 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 26451808	 26453504	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16463_PI429285431	0.898216	A	0.90692836	A	0.99397925002479	0	lncRNA	18161-1_{1..472}	lnc-THBS2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THBS2-7:1	chr6	169327552	169328023	-	lnc-THBS2-7	lnc-THBS2-7:1	XLOC_005931	linc-DACT2-4	NA	NA	NA	inter
LNCA_21_P0001743	9.054294	P	9.143909	P	0.939773505275819	0	lncRNA	TCONS_00002486	NA	NA	NA	NA	XLOC_001036	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001036), lincRNA [TCONS_00002486]"	chr1:154674345-154671235	hs|1q21.3	Agilent_HUMAN_G3V2	TCONS_00002486	TCONS_00002486	chr1	154671235	154674345	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10371_PI429285431	0.8979226	A	0.89968336	A	0.998780278635882	0	lncRNA	11897-1_{1..1029}	lnc-NDEL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDEL1-2:1	chr17	  8624283	  8625311	+	lnc-NDEL1-2	lnc-NDEL1-2:1	XLOC_012103	linc-NTN1-3	CCDC42	"hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.20;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70chr17:8633246-8635087"	NA	inter
CUST_27189_PI429285431	0.9569268	A	0.9924726	A	0.975662578541759	0	lncRNA	28729-1_{1..379}	n324318|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042973|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042973|-1.1271600|-0.2057572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324318|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042973|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042973|-1.1271600|-0.2057572	chr6	161267390	161267768	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002393	0.91969854	A	0.9244731	A	0.996695997466468	0	lncRNA	ENST00000450467	XR_108384	XR_108384	NA	Hs.258100	XLOC_001964	NA	ENST00000450467	THC2651514	NA	"PREDICTED: Homo sapiens hypothetical LOC100506216 (LOC100506216), miscRNA [XR_108384]"	chr2:6789433-6789374	hs|2p25.2	Agilent_HUMAN_G3V2	ENST00000450467	ENST00000450467	chr2	  6789374	  6789433	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13364_PI429285431	0.896492	A	0.89968175	A	0.997791476166278	0	lncRNA	15002-1_{1..675}	lnc-MME-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MME-1:6	chr3	154976047	154976721	+	lnc-MME-1	lnc-MME-1:6	XLOC_002886	linc-GMPS-3	NA	NA	NA	inter
CUST_20239_PI429285431	0.92666686	A	0.95958126	A	0.977443759750578	0	lncRNA	21882-1_{1..2598}	lnc-DHX36-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-DHX36-1:4	chr3	153838861	153841458	-	lnc-DHX36-1	lnc-DHX36-1:4	ENSG00000243069.1	ARHGEF26-AS1	ARHGEF26	NA	chr3:153839149-153848999	inner
CUST_13708_PI429285431	5.929625	P	5.96688	P	0.974507369024142	0	lncRNA	15346-1_{1..429}	lnc-NCOA3-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCOA3-8:1	chr20	 46612726	 46613154	+	lnc-NCOA3-8	lnc-NCOA3-8:1	XLOC_013546	linc-ARFGEF2-9	LOC100130589	NA	chr20:46605506-46606861	inter
CUST_15000_PI429285431	2.184267	A	2.1105683	A	1.05241134065187	0	lncRNA	16662-1_{1..832}	lnc-ITGA6-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITGA6-1:3	chr2	173188078	173188909	+	lnc-ITGA6-1	lnc-ITGA6-1:3	XLOC_001757	linc-ITGA6-1	NA	NA	NA	inter
CUST_31947_PI429285431	0.9047727	A	0.9053067	A	0.99962992789916	0	lncRNA	33674-1_{1..3000}	n338504|AK092969|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|901|NULL|-0.8751830|-0.2062061	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338504|AK092969|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|901|NULL|-0.8751830|-0.2062061	chr1	207986921	207989920	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3616_PI429285431	0.90204775	A	0.90378225	A	0.998798458644877	0	lncRNA	3586-1_{1..430}	"transcript_id ""ENST00000413286.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413286.1"" | genecode_v17"	chr10	  8442823	  8443252	+	ENSG00000226990.1	ENST00000413286.1	RP11-543F8.2	RP11-543F8.2-001	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40"	NA	inter
CUST_45669_PI429285431	1.1271642	A	1.1861721	A	0.959924004612439	0	lncRNA	50045-1_{1..1332}	"gi|261244917|ref|NR_029380.1| Homo sapiens uncharacterized LOC399806 (FLJ41350), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|261244917|ref|NR_029380.1| Homo sapiens uncharacterized LOC399806 (FLJ41350), non-coding RNA"	Chr10	102989351	102990682	+	399806	NR_029380.1	NA	NA	NA	NA	NA	inter
CUST_26692_PI429285431	5.9783564	P	6.006349	P	0.980784034700543	0	lncRNA	28201-1_{1..918}	n767|AF071171|Hoxa11-ASRNA|Homosapiens|Hoxa11-AS|NONCODEv2.0|n767|NULL|-1.5906100|-0.1105445	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n767|AF071171|Hoxa11-ASRNA|Homosapiens|Hoxa11-AS|NONCODEv2.0|n767|NULL|-1.5906100|-0.1105445	chr7	 27227647	 27228564	+	NA	NA	NA	NA	HOXA10	NA	chr7:27217647-27219880	inter
CUST_24794_PI429285431	4.2239485	P	4.022835	P	1.14958528488639	0	lncRNA	26337-1_{1..785}	lnc-CPM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPM-1:1	chr12	 69236634	 69237418	-	lnc-CPM-1	lnc-CPM-1:1	ENSG00000257181.1	RP11-611O2.5	MDM2	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40chr12:69226634-69239212"	NA	inner
CUST_26770_PI429285431	5.4918175	P	4.302757	P	2.28004215787213	0	lncRNA	28269-1_{1..280}	n323822|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080579|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080579|-0.4372350|-0.2030581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323822|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080579|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080579|-0.4372350|-0.2030581	chrX	114863598	114863877	+	NA	NA	NA	NA	PLS3	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80chrX:114853598-114875639"	NA	inner
CUST_39448_PI429285431	4.793171	P	5.0014186	P	0.865587997752852	0	lncRNA	40393-1_{1..3000}	n386901|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010urx.1||2.4803800|-0.1521312	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386901|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010urx.1||2.4803800|-0.1521312	chr15	100330360	100333359	-	NA	NA	NA	NA	NA	"hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-59.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_GOLGA8B:range=chr15:34819833-348281135'pad=0,hg19_refFlat_GOLGA8B:range=chr15:34819833-348281135'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0,hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0,hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0,hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_GOLGA2:range=chr9:131019346-1310382555'pad=0,hg19_refFlat_GOLGA2:range=chr9:131019346-1310382555'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0,hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_GOLGA8A:range=chr15:34673612-346818925'pad=0,hg19_refFlat_GOLGA8A:range=chr15:34673612-346818925'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0,hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
CUST_47518_PI429285431	4.7888365	P	4.626487	P	1.11910817768355	0	lncRNA	51529-1_{1..2471}	"gi|240849177|ref|NR_027833.1| Homo sapiens apolipoprotein L, 3 (APOL3), transcript variant alpha/a, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|240849177|ref|NR_027833.1| Homo sapiens apolipoprotein L, 3 (APOL3), transcript variant alpha/a, non-coding RNA"	Chr22	 36536371	 36538841	-	80833	NR_027833.1	NA	NA	NA	NA	NA	inter
CUST_28843_PI429285431	0.88925284	A	0.9467236	A	0.960947314382096	0	lncRNA	30551-1_{1..326}	n326258|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088230|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088230|-0.9920040|-0.3577194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326258|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088230|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088230|-0.9920040|-0.3577194	chr1	207612022	207612347	+	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50"	NA	inter
CUST_49664_PI429285431	1.2240288	A	1.1468043	A	1.05498647236729	0	lncRNA	53445-1_{1..335}	hg19_lincRNAsTranscripts_TCONS_l2_00026242 range=chr7:140912396-141156604 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026242 range=chr7:140912396-141156604 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	140912396	140912730	+	NA	NA	NA	NA	LOC100507421	NA	chr7:140902396-141166604	inner
CUST_49083_PI429285431	4.0456567	P	3.3753257	P	1.59143805199165	0	lncRNA	52907-1_{1..837}	hg19_lincRNAsTranscripts_TCONS_l2_00021054 range=chr4:9146577-9151066 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021054 range=chr4:9146577-9151066 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  9146577	  9147413	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70"	NA	inter
CUST_48380_PI429285431	0.8954852	A	0.8989172	A	0.997623946171641	0	lncRNA	52233-1_{1..509}	hg19_lincRNAsTranscripts_TCONS_l2_00000468 range=chr1:107360916-107408733 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000468 range=chr1:107360916-107408733 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	107360916	107361424	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40669_PI429285431	1.7530849	A	2.2114942	A	0.727788267934266	0	lncRNA	41403-1_{1..1127}	n410223|NR_037169_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037169_8||0.2292790|-0.2449967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410223|NR_037169_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037169_8||0.2292790|-0.2449967	chr6	  3591245	  3592371	-	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70"	NA	inter
CUST_18274_PI429285431	2.785191	A	2.2055721	A	1.4944544238138	0	lncRNA	20006-1_{1..1771}	lnc-C11orf89-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C11orf89-2:10	chr11	  2017748	  2019518	-	lnc-C11orf89-2	lnc-C11orf89-2:10	ENSG00000130600	H19	NA	NA	NA	inter
CUST_7225_PI429285431	1.1233153	A	0.8920379	A	1.17387386790915	0	lncRNA	7726-1_{1..303}	"transcript_id ""ENST00000363291.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000363291.1"" | genecode_v17"	chr5	148495741	148496043	-	ENSG00000200161.1	ENST00000363291.1	RN7SKP145	RN7SKP145-201	NA	NA	NA	inter
CUST_30350_PI429285431	6.0603013	P	6.178634	P	0.921251711781324	0	lncRNA	32126-1_{1..331}	n335443|AY684333|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257116_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257116_04|1.4102900|-0.0780456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335443|AY684333|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257116_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257116_04|1.4102900|-0.0780456	chr6	 32372814	 32373144	-	NA	NA	NA	NA	BTNL2	NA	chr6:32362814-32374900	inner
CUST_31491_PI429285431	0.9187206	A	0.9222843	A	0.997532879748612	0	lncRNA	33255-1_{1..1717}	n337972|BC031950|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|358|NULL|-0.9843680|-0.2905566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337972|BC031950|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|358|NULL|-0.9843680|-0.2905566	chr1	 59938747	 59940463	+	NA	NA	NA	NA	FGGY	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50chr1:59928747-59950449"	NA	inner
CUST_19826_PI429285431	3.6799202	P	3.7504723	P	0.952273506034622	0	lncRNA	21483-1_{1..2665}	lnc-EMB-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EMB-5:1	chr5	 50678808	 50681472	-	lnc-EMB-5	lnc-EMB-5:1	ENSG00000259663.1	CTD-2314G24.2	ISL1	NA	chr5:50678958-50689494	inter
CUST_18678_PI429285431	1.6157222	A	1.6169448	A	0.99915291723439	0	lncRNA	20379-1_{1..734}	lnc-PRMT6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PRMT6-1:1	chr1	107380742	107381475	+	lnc-PRMT6-1	lnc-PRMT6-1:1	ENSG00000237460	RP11-233E12.1-001	NA	NA	NA	inter
CUST_11545_PI429285431	1.1212332	A	0.9095125	A	1.15806858703648	0	lncRNA	13118-1_{1..471}	lnc-PKD2L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PKD2L1-1:1	chr10	102106045	102106515	-	lnc-PKD2L1-1	lnc-PKD2L1-1:1	XLOC_008919	linc-PKD2L1	SCD	NA	chr10:102106772-102116147	inter
CUST_36996_PI429285431	2.3542337	A	2.1557317	A	1.14750624090565	0	lncRNA	38139-1_{1..3000}	n345455|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1004|NULL|-1.2821400|-0.2723123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345455|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1004|NULL|-1.2821400|-0.2723123	chr1	113500102	113503101	+	NA	NA	NA	NA	SLC16A1	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.21;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-21.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40chr1:113490102-113498975"	NA	inter
CUST_50529_PI429285431	8.937486	P	8.938269	P	0.999457413011209	0	lncRNA	54224-2_{3001..4908}	hg19_lincRNAsTranscripts_TCONS_l2_00030387 range=chrX:149108362-149132635 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030387 range=chrX:149108362-149132635 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	149111362	149113269	+	NA	NA	NA	NA	CXorf40B	NA	chrX:149100415-149106716	inter
CUST_50067_PI429285431	2.5327716	A	3.1790628	P	0.638920705981227	0	lncRNA	53800-1_{1..260}	hg19_lincRNAsTranscripts_TCONS_l2_00027792 range=chr8:58260928-58265080 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027792 range=chr8:58260928-58265080 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 58260928	 58261187	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45638_PI429285431	2.1640673	A	1.8508339	A	1.24248927612639	0	lncRNA	50019-1_{1..3000}	"gi|254826701|ref|NR_027431.2| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|254826701|ref|NR_027431.2| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_027431.2	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50"	NA	Unknown
CUST_25379_PI429285431	1.4583194	A	0.90146005	A	1.47106332320814	0	lncRNA	26910-1_{1..749}	lnc-TCTN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCTN3-1:1	chr10	 97849739	 97850487	-	lnc-TCTN3-1	lnc-TCTN3-1:1	ENSG00000226688.1	RP11-429G19.2	NA	NA	NA	inter
CUST_33473_PI429285431	9.267516	P	8.866724	P	1.32023248328487	0	lncRNA	35046-1_{1..762}	n340208|BC047115|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2669|NULL|-0.8581570|-0.3902005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340208|BC047115|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2669|NULL|-0.8581570|-0.3902005	chr4	121751723	121752484	-	NA	NA	NA	NA	PRDM5	NA	chr4:121741723-121762408	inner
CUST_38639_PI429285431	1.2029662	A	1.7544155	A	0.682334325768921	0	lncRNA	39642-1_{1..2990}	n383855|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wnm.1||0.2794310|-0.2997454	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383855|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wnm.1||0.2794310|-0.2997454	chr20	  9748763	  9751752	-	NA	NA	NA	NA	PAK7	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10chr20:9738763-9761753"	NA	inner
CUST_9670_PI429285431	0.90192866	A	0.8988867	A	1.00211075050152	0	lncRNA	11187-1_{1..299}	lnc-CSRNP3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CSRNP3-4:1	chr2	166938075	166938373	+	lnc-CSRNP3-4	lnc-CSRNP3-4:1	XLOC_001741	linc-XIRP2-1	SCN1A	NA	chr2:166928075-166948251	inner
CUST_22726_PI429285431	0.8857449	A	1.0334828	A	0.902664703162303	0	lncRNA	24310-1_{1..1458}	lnc-CLK4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-CLK4-1:1	chr5	177869927	177871384	-	lnc-CLK4-1	lnc-CLK4-1:1	ENSG00000245688.1	CTB-26E19.1	COL23A1	NA	chr5:177859927-177880095	inner
CUST_28180_PI429285431	0.9020444	A	0.90776426	A	0.996043144233503	0	lncRNA	29807-2_{3001..4209}	n325460|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322744|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322744|1.0910400|-0.2295781	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325460|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322744|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322744|1.0910400|-0.2295781	chr2	  6426592	  6427800	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50"	NA	inter
CUST_13525_PI429285431	3.4240146	P	4.0161743	P	0.663349136400446	0	lncRNA	15165-1_{1..303}	lnc-THBS2-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THBS2-8:1	chr6	169256058	169256360	-	lnc-THBS2-8	lnc-THBS2-8:1	XLOC_005930	linc-DACT2-5	NA	NA	NA	inter
CUST_16649_PI429285431	5.233884	P	5.491684	P	0.836362336316847	0	lncRNA	18351-1_{1..1600}	lnc-FOXA2-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-FOXA2-7:2	chr20	 22400598	 22402197	-	lnc-FOXA2-7	lnc-FOXA2-7:2	XLOC_013680	linc-NKX2-2-2	NA	NA	NA	inter
CUST_38153_PI429285431	0.9028586	A	0.90991133	A	0.995123349744427	0	lncRNA	39226-1_{1..1941}	n381364|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hto.1||-0.0645606|-0.3387256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381364|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hto.1||-0.0645606|-0.3387256	chr1	229589676	229591616	-	NA	NA	NA	NA	NUP133	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50chr1:229579676-229601617"	NA	inner
CUST_8374_PI429285431	1.0819882	A	0.9077678	A	1.12835450259967	0	lncRNA	9952-1_{1..454}	lnc-NRG2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NRG2-1:2	chr5	139488058	139488511	-	lnc-NRG2-1	lnc-NRG2-1:2	ENSG00000245146	CTB-131B5.4	PURA	NA	chr5:139493708-139498173	inter
CUST_17400_PI429285431	0.92004	A	0.88723165	A	1.02300156348466	0	lncRNA	19122-1_{1..1046}	lnc-ASB9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASB9-1:1	chrX	 15253309	 15254354	-	lnc-ASB9-1	lnc-ASB9-1:1	XLOC_008118	linc-FANCB	ASB9	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20chrX:15262109-15264002"	NA	inter
CUST_8153_PI429285431	13.353221	P	12.312745	P	2.05690619300264	0	lncRNA	9756-1_{1..583}	lnc-SERPINC1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:2	chr1	173837098	173837680	-	lnc-SERPINC1-1	lnc-SERPINC1-1:2	ENSG00000234741	GAS5	DARS2	NA	chr1:173827098-173827682	inter
CUST_10471_PI429285431	1.0949726	A	0.9074998	A	1.13876716468991	0	lncRNA	11997-1_{1..904}	lnc-ALPK1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALPK1-1:3	chr4	113438964	113439867	+	lnc-ALPK1-1	lnc-ALPK1-1:3	XLOC_003650	linc-LARP7	NEUROG2	NA	chr4:113434672-113437328	inter
CUST_6945_PI429285431	2.317303	A	2.518677	A	0.869721859356546	0	lncRNA	6894-1_{1..524}	"transcript_id ""ENST00000412149.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412149.1"" | genecode_v17"	chr22	 22648098	 22648621	+	ENSG00000234630.1	ENST00000412149.1	LL22NC03-2H8.4	LL22NC03-2H8.4-001	NA	NA	NA	inter
CUST_28562_PI429285431	1.0981381	A	1.4262741	A	0.79656500214334	0	lncRNA	30240-1_{1..981}	n325917|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049342|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049342|-0.0204521|-0.4385800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325917|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049342|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049342|-0.0204521|-0.4385800	chr10	 92152257	 92153237	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010622	0.90467566	A	0.89634955	A	1.00578790524304	0	lncRNA	TCONS_l2_00001279	NA	NA	NA	NA	XLOC_l2_000941	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000941), lincRNA [TCONS_l2_00001279]"	chr1:65460814-65460755	hs|1p31.3	Agilent_HUMAN_G3V2	TCONS_l2_00001279	TCONS_l2_00001279	chr1	 65460755	 65460814	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012814	8.119402	P	8.107291	P	1.00843003984861	0	lncRNA	ENST00000515178	NA	BC036406	NA	Hs.621250	XLOC_l2_011365	NA	ENST00000515178	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011365), lincRNA [TCONS_l2_00022059]"	chr4:175444911-175444852	hs|4q34.1	Agilent_HUMAN_G3V2	ENST00000515178	ENST00000515178	chr4	175444852	175444911	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31637_PI429285431	0.8955146	A	0.8982302	A	0.998119459951839	0	lncRNA	33389-1_{1..1684}	n338158|AK125234|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|547|NULL|-1.2466500|-0.3093256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338158|AK125234|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|547|NULL|-1.2466500|-0.3093256	chr22	 44349516	 44351199	-	NA	NA	NA	NA	PNPLA3	NA	chr22:44339516-44343448	inter
CUST_39872_PI429285431	3.9594083	P	4.158732	P	0.87095875168479	0	lncRNA	40766-3_{6001..6814}	n406539|NR_024052_2|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_2||0.2729430|-0.2831099	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406539|NR_024052_2|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_2||0.2729430|-0.2831099	chr6	  1554842	  1555655	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50"	NA	inter
LNCA_21_P0004893	0.9075771	A	0.89885414	A	1.00606461086805	0	lncRNA	TCONS_00011849	NA	NA	NA	NA	XLOC_005336	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005336), lincRNA [TCONS_00011849]"	chr6:66858314-66886208	hs|6q12	Agilent_HUMAN_G3V2	TCONS_00011849	TCONS_00011849	chr6	 66858314	 66886208	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8947_PI429285431	0.9059645	A	0.8978175	A	1.0056630448363	0	lncRNA	10481-1_{1..1925}	lnc-RNF219-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF219-3:1	chr13	 79923725	 79925649	-	lnc-RNF219-3	lnc-RNF219-3:1	ENSG00000250925	ENST00000510202	RBM26	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-18.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10chr13:79913725-79934372"	NA	inner
CUST_28302_PI429285431	5.169977	P	5.2015896	P	0.978326143419697	0	lncRNA	29945-1_{1..516}	n325605|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000072584|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000072584|-1.1605000|-0.2591444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325605|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000072584|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000072584|-1.1605000|-0.2591444	chr14	100493190	100493705	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35698_PI429285431	3.131515	P	3.8130198	P	0.623514579598137	0	lncRNA	37118-1_{1..2758}	n342862|BC080605|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5366|NULL|1.4509200|-0.1366448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342862|BC080605|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5366|NULL|1.4509200|-0.1366448	chr9	 68409997	 68412754	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2346_PI429285431	2.0391788	A	2.2540886	A	0.861600026877833	0	lncRNA	2338-1_{1..638}	"transcript_id ""ENST00000513422.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513422.1"" | genecode_v17"	chr5	123795605	123796242	-	ENSG00000251214.1	ENST00000513422.1	CTD-2308B18.1	CTD-2308B18.1-001	NA	NA	NA	inter
CUST_1326_PI429285431	1.6556576	A	1.277968	A	1.29925949295335	0	lncRNA	1315-1_{1..332}	"transcript_id ""ENST00000455984.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455984.1"" | genecode_v17"	chr3	 27863089	 27863420	+	ENSG00000225548.1	ENST00000455984.1	AC098973.2	AC098973.2-003	NA	NA	NA	inter
CUST_30652_PI429285431	0.98828214	A	0.88977593	A	1.07066430511345	0	lncRNA	32434-1_{1..293}	n336040|X83744|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323984|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323984|1.4657700|-0.1863654	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336040|X83744|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323984|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323984|1.4657700|-0.1863654	chr1	201328740	201329032	-	NA	NA	NA	NA	TNNT2	NA	chr1:201328142-201342463	inner
CUST_8963_PI429285431	2.9778466	A	2.9432302	A	1.02428443854369	0	lncRNA	10497-1_{1..740}	lnc-OSBPL6-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OSBPL6-2:4	chr2	179283238	179283977	+	lnc-OSBPL6-2	lnc-OSBPL6-2:4	ENSG00000223960	AC009948.5	NA	NA	NA	inter
CUST_11641_PI429285431	0.904815	A	0.9723474	A	0.95426879385288	0	lncRNA	13218-1_{1..698}	lnc-MID1IP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MID1IP1-2:1	chrX	 38744791	 38745488	+	lnc-MID1IP1-2	lnc-MID1IP1-2:1	XLOC_007955	linc-ATP6AP2-6	NA	NA	NA	inter
CUST_17265_PI429285431	1.125854	A	0.89570767	A	1.17295391383434	0	lncRNA	18983-1_{1..1202}	lnc-CDC42EP3-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDC42EP3-1:6	chr2	 38056076	 38057277	-	lnc-CDC42EP3-1	lnc-CDC42EP3-1:6	XLOC_002049	linc-CDC42EP3	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70"	NA	inter
CUST_9496_PI429285431	1.4217408	A	1.220933	A	1.14934171921152	0	lncRNA	11003-1_{1..698}	lnc-C2orf40-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2orf40-4:1	chr2	107276996	107277693	+	lnc-C2orf40-4	lnc-C2orf40-4:1	XLOC_001614	linc-RGPD4-6	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80"	NA	inter
CUST_39417_PI429285431	0.9121918	A	1.3361602	A	0.745371519429144	0	lncRNA	40377-1_{1..921}	n386693|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010scc.1||4.3527200|-0.1819423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,"	>n386693|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010scc.1||4.3527200|-0.1819423	chr11	130238788	130239708	+	NA	NA	NA	NA	ADAMTS8	NA	chr11:130274818-130282193	inter
CUST_48849_PI429285431	4.230813	P	4.4094133	P	0.88355980863979	0	lncRNA	52685-1_{1..272}	hg19_lincRNAsTranscripts_TCONS_l2_00018851 range=chr3:129620554-129637364 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018851 range=chr3:129620554-129637364 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	129620554	129620825	+	NA	NA	NA	NA	TMCC1	NA	chr3:129610554-129612419	inter
CUST_46637_PI429285431	3.1935606	P	3.3758688	A	0.881291869210913	0	lncRNA	50812-1_{1..480}	"gi|300244575|ref|NR_034019.1| Homo sapiens uncharacterized LOC100130700 (LOC100130700), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300244575|ref|NR_034019.1| Homo sapiens uncharacterized LOC100130700 (LOC100130700), non-coding RNA"	Chr16	 34739458	 34739937	-	100130700	NR_034019.1	NA	NA	NA	NA	NA	inter
CUST_4110_PI429285431	2.0382392	A	1.2255077	A	1.7565339974805	0	lncRNA	4071-1_{1..897}	"transcript_id ""ENST00000602773.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602773.1"" | genecode_v17"	chr11	128484235	128485131	-	ENSG00000270160.1	ENST00000602773.1	RP11-264E20.2	RP11-264E20.2-001	NA	NA	NA	inter
CUST_28681_PI429285431	5.2974677	P	5.7612815	P	0.725066990450474	0	lncRNA	30377-1_{1..1251}	n326065|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046741|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046741|-0.9549980|-0.2728766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326065|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046741|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046741|-0.9549980|-0.2728766	chr10	 10517917	 10519167	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004468	7.823404	P	7.344668	P	1.3935222135323	0	lncRNA	TCONS_00010554	NA	NA	NA	NA	XLOC_005081	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005081), lincRNA [TCONS_00010554]"	chr5:171150097-171150038	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00010554	TCONS_00010554	chr5	171150038	171150097	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33289_PI429285431	1.0983033	A	0.89910746	A	1.14805824752826	0	lncRNA	34872-1_{1..1798}	n340000|AK130211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2453|NULL|0.0764609|-0.3105469	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340000|AK130211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2453|NULL|0.0764609|-0.3105469	chr10	 26853754	 26855551	+	NA	NA	NA	NA	APBB1IP	"hg19_refFlat_EFCAB5:range=chr17:28270646-284007085'pad=0,hg19_refFlat_EFCAB5:range=chr17:28270646-284007085'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80chr10:26843754-26856732"	NA	inner
CUST_47802_PI429285431	4.5939846	P	4.2614326	P	1.25923888785526	0	lncRNA	51722-2_{3001..6000}	"gi|225903387|ref|NR_027420.1| Homo sapiens ankyrin repeat domain 57 pseudogene (LOC389834), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225903387|ref|NR_027420.1| Homo sapiens ankyrin repeat domain 57 pseudogene (LOC389834), non-coding RNA"	NT_113889.1	    49845	    52844	-	389834	NR_027420.1	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00"	NA	Unknown
CUST_43181_PI429285431	4.164918	P	4.171551	P	0.995412907743097	0	lncRNA	47995-1_{1..1699}	ENST00000593078 havana:sense_intronic chromosome:GRCh37:18:33175865:33177563:1 gene:ENSG00000266965 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000593078 havana:sense_intronic chromosome:GRCh37:18:33175865:33177563:1 gene:ENSG00000266965 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr18	 33175865	 33177563	+	ENSG00000266965	ENST00000593078	NA	NA	NA	NA	NA	inter
LNCA_21_P0002185	4.8399677	P	5.1665506	P	0.797422987524	0	lncRNA	TCONS_00003603	NA	NA	NA	NA	XLOC_001398	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001398), lincRNA [TCONS_00003603]"	chr2:25202061-25202120	hs|2p23.3	Agilent_HUMAN_G3V2	TCONS_00003603	TCONS_00003603	chr2	 25202061	 25202120	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28690_PI429285431	3.0501842	P	2.3742037	A	1.59768223788805	0	lncRNA	30388-1_{1..557}	n326077|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046676|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046676|-0.6897710|-0.3515943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326077|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046676|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046676|-0.6897710|-0.3515943	chr10	  7527525	  7528081	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6973_PI429285431	6.5274315	P	6.1897354	P	1.26373686749233	0	lncRNA	6921-1_{1..473}	"transcript_id ""ENST00000430449.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430449.1"" | genecode_v17"	chr22	 32359344	 32359816	+	ENSG00000227519.1	ENST00000430449.1	CTA-342B11.1	CTA-342B11.1-001	YWHAH	NA	chr22:32349344-32353590	inter
CUST_34350_PI429285431	1.5157695	A	1.0486699	A	1.38232763562218	0	lncRNA	35840-1_{1..2554}	n341219|BC028134|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3687|NULL|-0.9620820|-0.3316606	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341219|BC028134|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3687|NULL|-0.9620820|-0.3316606	chr7	 29231195	 29233748	-	NA	NA	NA	NA	CHN2	NA	chr7:29234121-29243725	inter
LNCA_21_P0006736	2.1778557	A	0.90942454	A	2.4089946006075	0	lncRNA	ENST00000435106	NA	NA	NA	NA	XLOC_008729	NA	ENST00000435106	NA	NA	"BROAD Institute lincRNA (XLOC_008729), lincRNA [TCONS_00017926]"	chr10:10478007-10477948	hs|10p14	Agilent_HUMAN_G3V2	ENST00000435106	ENST00000435106	chr10	 10477948	 10478007	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32987_PI429285431	0.913682	A	0.91914016	A	0.996223839478663	0	lncRNA	34603-1_{1..3000}	n339668|BC035116|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2112|NULL|-1.1693200|-0.3990787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339668|BC035116|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2112|NULL|-1.1693200|-0.3990787	chr3	160792440	160795439	+	NA	NA	NA	NA	PPM1L	NA	chr3:160782440-160788817	inter
CUST_27695_PI429285431	0.92391616	A	0.9240922	A	0.99987798581467	0	lncRNA	29274-1_{1..1000}	n324903|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000157937|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000157937|-0.7811030|-0.2568751	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324903|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000157937|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000157937|-0.7811030|-0.2568751	chr21	 15664711	 15665710	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40800_PI429285431	1.4523369	A	1.5674185	A	0.923330084955002	0	lncRNA	41508-1_{1..1965}	n410560|NR_037792|lncRNA|Homosapiens||RefGeneNoncode|NR_037792||3.0334800|-0.2777887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410560|NR_037792|lncRNA|Homosapiens||RefGeneNoncode|NR_037792||3.0334800|-0.2777887	chr14	 50065414	 50067378	+	NA	NA	NA	NA	LRR1	NA	chr14:50065415-50081390	inner
CUST_32864_PI429285431	1.0656283	A	0.9039396	A	1.11859570808327	0	lncRNA	34493-1_{1..686}	n339525|CR612160|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1966|NULL|-0.6497990|-0.1388658	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339525|CR612160|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1966|NULL|-0.6497990|-0.1388658	chr21	 43654178	 43654863	-	NA	NA	NA	NA	ABCG1	NA	chr21:43644178-43664864	inner
LNCA_21_P0011144	0.90511143	A	0.918637	A	0.990668599559901	0	lncRNA	TCONS_l2_00006862	NA	NA	NA	NA	XLOC_l2_003736	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003736), lincRNA [TCONS_l2_00006862]"	chr13:53774293-53774352	hs|13q14.3	Agilent_HUMAN_G3V2	TCONS_l2_00006862	TCONS_l2_00006862	chr13	 53774293	 53774352	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20286_PI429285431	0.90911615	A	0.92544496	A	0.988745542019947	0	lncRNA	21930-1_{1..278}	lnc-LIN28B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIN28B-2:1	chr6	105293655	105293932	+	lnc-LIN28B-2	lnc-LIN28B-2:1	ENSG00000227535.1	RP11-809N15.2	HACE1	NA	chr6:105283655-105303693	inner
CUST_5057_PI429285431	1.5972886	A	3.1254735	P	0.346713303648006	0	lncRNA	4997-1_{1..683}	"transcript_id ""ENST00000602383.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602383.1"" | genecode_v17"	chr14	104179904	104180586	+	ENSG00000269963.1	ENST00000602383.1	RP11-73M18.9	RP11-73M18.9-001	ZFYVE21	NA	chr14:104182081-104190586	inner
CUST_29692_PI429285431	3.3730757	P	3.8946285	P	0.69662164245622	0	lncRNA	31454-1_{1..302}	n333353|AY266362|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085659|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085659|2.6403900|-0.1541478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333353|AY266362|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085659|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085659|2.6403900|-0.1541478	chr19	 10572607	 10572908	+	NA	NA	NA	NA	PDE4A	NA	chr19:10562607-10580307	inner
CUST_26749_PI429285431	4.1233487	P	4.020946	P	1.07355990774865	0	lncRNA	28243-1_{1..534}	n323794|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058654|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058654|-1.2286600|-0.4250160	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323794|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058654|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058654|-1.2286600|-0.4250160	chrX	146789387	146789920	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004410	0.9168613	A	0.92472136	A	0.994566635980003	0	lncRNA	TCONS_00010372	NA	NA	NA	NA	XLOC_004875	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004875), lincRNA [TCONS_00010372]"	chr5:71966391-71966332	hs|5q13.2	Agilent_HUMAN_G3V2	TCONS_00010372	TCONS_00010372	chr5	 71966332	 71966391	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14360_PI429285431	5.6667857	P	6.036931	P	0.773704569744276	0	lncRNA	16018-1_{1..644}	lnc-EIF2B5-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2B5-2:6	chr3	184456423	184457066	+	lnc-EIF2B5-2	lnc-EIF2B5-2:6	XLOC_002952	linc-VPS8-2	NA	NA	NA	inter
CUST_39791_PI429285431	1.4905386	A	1.1191971	A	1.29355509276877	0	lncRNA	40701-2_{3001..4028}	n406127|NR_003528|lncRNA|Homosapiens||RefGeneNoncode|NR_003528||11.9754000|-0.1912062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406127|NR_003528|lncRNA|Homosapiens||RefGeneNoncode|NR_003528||11.9754000|-0.1912062	chr9	 39446813	 39447840	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45558_PI429285431	4.410718	P	4.4993267	P	0.940429239125093	0	lncRNA	49957-1_{1..1818}	"gi|389616121|ref|NR_051973.1| Homo sapiens cAMP responsive element modulator (CREM), transcript variant 17, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|389616121|ref|NR_051973.1| Homo sapiens cAMP responsive element modulator (CREM), transcript variant 17, non-coding RNA"	Chr10	 35415769	 35417586	+	1390	NR_051973.1	NA	NA	NA	NA	NA	inter
CUST_21627_PI429285431	0.900603	A	0.9108466	A	0.992924825276515	0	lncRNA	23239-1_{1..700}	lnc-SNW1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNW1-2:1	chr14	 79164218	 79164917	-	lnc-SNW1-2	lnc-SNW1-2:1	ENSG00000258719.1	RP11-232C2.3	NRXN3	NA	chr14:79154218-79174465	inner
CUST_42282_PI429285431	8.381592	P	8.41041	P	0.980223065413754	0	lncRNA	44895-1_{1..67}	ENST00000579069 ncrna:snoRNA chromosome:GRCh37:HSCHR6_MHC_QBL:31795112:31795178:1 gene:ENSG00000265156 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579069 ncrna:snoRNA chromosome:GRCh37:HSCHR6_MHC_QBL:31795112:31795178:1 gene:ENSG00000265156 gene_biotype:snoRNA transcript_biotype:snoRNA	chrHSCHR6_MHC_QBL	 31795112	 31795178	+	ENSG00000265156	ENST00000579069	NA	NA	NA	NA	NA	Unknown
CUST_6227_PI429285431	10.994066	P	11.177099	P	0.880849225477356	0	lncRNA	6153-1_{1..523}	"transcript_id ""ENST00000590199.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590199.1"" | genecode_v17"	chr18	 59259608	 59260130	-	ENSG00000267175.1	ENST00000590199.1	RP11-879F14.1	RP11-879F14.1-005	NA	NA	NA	inter
CUST_14141_PI429285431	0.8851563	A	0.89606583	A	0.9924666093483	0	lncRNA	15792-1_{1..224}	lnc-NTRK3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTRK3-2:1	chr15	 87973921	 87974144	-	lnc-NTRK3-2	lnc-NTRK3-2:1	XLOC_011567	linc-KLHL25-1	NA	NA	NA	inter
CUST_36808_PI429285431	6.854266	P	6.6137905	P	1.18138197070681	0	lncRNA	37980-1_{1..1731}	n345288|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_837|NULL|-1.3594900|-0.1371841	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345288|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_837|NULL|-1.3594900|-0.1371841	chr14	105282500	105284230	+	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20"	NA	inter
CUST_44588_PI429285431	0.9241501	A	0.9105116	A	1.00949831317871	0	lncRNA	49168-1_{1..624}	"gi|387527977|ref|NR_046678.1| Homo sapiens NREP antisense RNA 1 (NREP-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|387527977|ref|NR_046678.1| Homo sapiens NREP antisense RNA 1 (NREP-AS1), non-coding RNA"	Chr5	111248205	111248828	+	100873948	NR_046678.1	NA	NA	NA	NA	NA	inter
CUST_17131_PI429285431	1.1360856	A	0.91607	A	1.16474618091265	0	lncRNA	18840-2_{3001..3254}	lnc-PTGES2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTGES2-1:3	chr9	130883202	130883455	-	lnc-PTGES2-1	lnc-PTGES2-1:3	XLOC_007858	linc-NAIF1	SLC25A25	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10chr9:130870202-130871524"	NA	inter
CUST_18732_PI429285431	0.9140401	A	0.90412074	A	1.00689926745789	0	lncRNA	20430-1_{1..237}	lnc-ELAVL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELAVL2-1:1	chr9	 23672287	 23672523	-	lnc-ELAVL2-1	lnc-ELAVL2-1:1	ENSG00000233906	RP11-315I14.2	ELAVL2	NA	chr9:23681883-23682397	inter
CUST_6872_PI429285431	0.9135282	A	1.0317339	A	0.921332812855301	0	lncRNA	6822-1_{1..292}	"transcript_id ""ENST00000440714.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440714.1"" | genecode_v17"	chr21	 40400461	 40400752	-	ENSG00000237609.1	ENST00000440714.1	AF064858.10	AF064858.10-001	NA	NA	NA	inter
CUST_10981_PI429285431	3.3796208	P	2.881734	A	1.41214359723406	0	lncRNA	12525-1_{1..752}	lnc-ACP1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACP1-6:1	chr2	   470532	   471283	+	lnc-ACP1-6	lnc-ACP1-6:1	XLOC_001305	linc-SNTG2-7	NA	NA	NA	inter
CUST_13308_PI429285431	6.131964	P	5.992753	P	1.10130265629934	0	lncRNA	14943-1_{1..634}	lnc-BMP6-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BMP6-7:1	chr6	  8792178	  8792811	+	lnc-BMP6-7	lnc-BMP6-7:1	XLOC_005163	linc-GCNT2-5	NA	NA	NA	inter
CUST_32611_PI429285431	10.913108	P	11.168833	P	0.83756612535776	0	lncRNA	34270-1_{1..2344}	n339231|AK095224|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1663|NULL|0.1985760|-0.2869369	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339231|AK095224|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1663|NULL|0.1985760|-0.2869369	chr3	  3742497	  3744840	-	NA	NA	NA	NA	LRRN1	NA	chr3:3841121-3852559	inner
CUST_34349_PI429285431	0.9031663	A	1.2427443	A	0.790272439156143	0	lncRNA	35839-2_{3001..3155}	n341218|BC042044|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3686|NULL|-1.0570800|-0.3648415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341218|BC042044|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3686|NULL|-1.0570800|-0.3648415	chr7	 28780527	 28780681	-	NA	NA	NA	NA	CREB5	NA	chr7:28767527-28865511	inner
CUST_5441_PI429285431	0.9004334	A	1.1762437	A	0.825986266746396	0	lncRNA	5375-1_{1..1655}	"transcript_id ""ENST00000564852.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564852.1"" | genecode_v17"	chr16	 17919109	 17920763	+	ENSG00000261555.1	ENST00000564852.1	CTD-3229J4.1	CTD-3229J4.1-001	NA	NA	NA	inter
CUST_43743_PI429285431	1.2507128	A	0.92384964	A	1.254283229788	0	lncRNA	48485-1_{1..981}	"gi|403420642|ref|NR_073155.1| Homo sapiens chromosome 1 open reading frame 145 (C1orf145), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|403420642|ref|NR_073155.1| Homo sapiens chromosome 1 open reading frame 145 (C1orf145), transcript variant 2, non-coding RNA"	Chr1	228391207	228392187	-	574407	NR_073155.1	NA	NA	NA	"hg19_refFlat_OBSCN:range=chr1:228399485-2285664965'pad=0,hg19_refFlat_OBSCN:range=chr1:228399485-2285664965'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.30;hg19_refFlat_OBSCN:range=chr1:228399485-2285484565'pad=0,hg19_refFlat_OBSCN:range=chr1:228399485-2285484565'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.30"	NA	inter
CUST_15239_PI429285431	1.0660448	A	0.888865	A	1.13067147151343	0	lncRNA	16910-1_{1..317}	lnc-UBE2E2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBE2E2-1:1	chr3	 23636612	 23636928	+	lnc-UBE2E2-1	lnc-UBE2E2-1:1	XLOC_002597	linc-UBE2E1	UBE2E2	NA	chr3:23626612-23632296	inter
CUST_43981_PI429285431	0.89933926	A	0.8945665	A	1.00331370335366	0	lncRNA	48681-1_{1..1739}	"gi|224282131|ref|NR_027019.1| Homo sapiens ankyrin repeat domain 30B-like (ANKRD30BL), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224282131|ref|NR_027019.1| Homo sapiens ankyrin repeat domain 30B-like (ANKRD30BL), transcript variant 1, non-coding RNA"	Chr2	132905164	132906902	-	554226	NR_027019.1	NA	NA	NA	NA	NA	inter
CUST_50966_PI429285431	0.89941335	A	0.9088749	A	0.993463211658327	0	lncRNA	54607-1_{1..458}	hg19_lincRNAsTranscripts_TCONS_l2_00005787 range=chr12:80648321-80651762 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005787 range=chr12:80648321-80651762 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 80648321	 80648778	+	NA	NA	NA	NA	OTOGL	NA	chr12:80638321-80661762	inner
CUST_40468_PI429285431	5.3024435	P	6.294752	P	0.502672789214956	0	lncRNA	41237-1_{1..434}	n409394|NR_033791|lncRNA|Homosapiens||RefGeneNoncode|NR_033791||1.3837800|-0.0469595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409394|NR_033791|lncRNA|Homosapiens||RefGeneNoncode|NR_033791||1.3837800|-0.0469595	chr11	 67380994	 67381427	-	NA	NA	NA	NA	NDUFV1	NA	chr11:67374323-67380012	inter
CUST_30412_PI429285431	4.8734207	P	5.039191	P	0.891452418004157	0	lncRNA	32192-1_{1..990}	n335546|BC071763|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264582|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264582|1.6516000|-0.2913573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335546|BC071763|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264582|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264582|1.6516000|-0.2913573	chr6	 83602162	 83603151	-	NA	NA	NA	NA	UBE2CBP	NA	chr6:83602186-83742262	inner
CUST_34088_PI429285431	4.497387	P	4.6767273	P	0.883106721477717	0	lncRNA	35616-2_{3001..5300}	n340912|BX648922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3377|NULL|-0.9927080|-0.1481109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340912|BX648922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3377|NULL|-0.9927080|-0.1481109	chr17	 77892050	 77894349	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00317851	0.90316445	A	0.89633054	A	1.00474814232098	0	lncRNA	ENST00000508998	NA	NA	NA	NA	XLOC_003457	NA	ENST00000508998	NA	NA	"BROAD Institute lincRNA (XLOC_003457), lincRNA [TCONS_00007473]"	chr4:11773429-11773488	hs|4p15.33	Agilent_HUMAN_G3V2	ENST00000508998	ENST00000508998	chr4	 11773429	 11773488	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50952_PI429285431	0.8827961	A	0.8911222	A	0.994245408717491	0	lncRNA	54593-1_{1..599}	hg19_lincRNAsTranscripts_TCONS_l2_00006305 range=chr12:68100640-68103355 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006305 range=chr12:68100640-68103355 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 68100640	 68101238	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28719_PI429285431	1.4500263	A	0.96766573	A	1.39702764527458	0	lncRNA	30419-1_{1..463}	n326109|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046489|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046489|-0.8475480|-0.2001172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326109|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046489|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046489|-0.8475480|-0.2001172	chr10	  3298194	  3298656	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16841_PI429285431	1.9358014	A	1.218279	A	1.64435568813959	0	lncRNA	18549-1_{1..324}	lnc-ASB15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASB15-1:1	chr7	123284724	123285047	+	lnc-ASB15-1	lnc-ASB15-1:1	XLOC_006224	linc-LMOD2	ASB15	NA	chr7:123274724-123277932	inter
CUST_2154_PI429285431	2.595514	A	2.5497637	P	1.03221986459348	0	lncRNA	2145-1_{1..569}	"transcript_id ""ENST00000510349.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510349.1"" | genecode_v17"	chr5	 50261521	 50262089	-	ENSG00000250360.1	ENST00000510349.1	CTD-2089N3.1	CTD-2089N3.1-001	NA	NA	NA	inter
CUST_48979_PI429285431	1.7645924	A	1.4642062	A	1.23147402674516	0	lncRNA	52818-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00019087 range=chr3:195342766-195348763 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019087 range=chr3:195342766-195348763 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	195342766	195345765	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14373_PI429285431	3.0775442	P	3.7969105	P	0.607364166726058	0	lncRNA	16033-1_{1..1613}	lnc-C1orf132-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf132-1:1	chr1	207979350	207980962	-	lnc-C1orf132-1	lnc-C1orf132-1:1	XLOC_001181	linc-YOD1-2	NA	NA	NA	inter
LNCA_19_P00802550	5.345337	P	5.31576	P	1.02071280755051	0	lncRNA	TCONS_00020555	NA	NA	NA	NA	XLOC_009868	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009868), lincRNA [TCONS_00020555]"	chr12:105805167-105805226	hs|12q23.3	Agilent_HUMAN_G3V2	TCONS_00020555	TCONS_00020555	chr12	105805167	105805226	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8129_PI429285431	2.1130118	A	1.2035941	A	1.8782872318654	0	lncRNA	9733-1_{1..757}	lnc-CMPK2-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CMPK2-2:5	chr2	  7058412	  7059168	-	lnc-CMPK2-2	lnc-CMPK2-2:5	ENSG00000228203	AC017076.4	RNF144A	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70chr2:7057523-7068794"	NA	inner
LNCA_21_P0010333	8.772697	P	8.658382	P	1.08246096472676	0	lncRNA	BC042984	NA	BC042984	NA	Hs.723715	LOC150185	uncharacterized LOC150185	NA	THC2576727	NA	"BROAD Institute lincRNA (XLOC_014297), lincRNA [TCONS_00029345]"	chr22:19543579-19543520	hs|22q11.21	Agilent_HUMAN_G3V2	BC042984	BC042984	chr22	 19543520	 19543579	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28431_PI429285431	0.8954527	A	0.9022177	A	0.995321836179611	0	lncRNA	30090-1_{1..834}	n325755|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044627|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044627|-1.0656900|-0.3528449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325755|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044627|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044627|-1.0656900|-0.3528449	chr13	 39653945	 39654778	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17143_PI429285431	6.8458295	P	6.9617014	P	0.922824428584731	0	lncRNA	18852-1_{1..293}	lnc-ANO1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANO1-1:1	chr11	 69916926	 69917218	+	lnc-ANO1-1	lnc-ANO1-1:1	XLOC_009197	linc-ANO1-1	ANO1	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80chr11:69924408-69927097"	NA	inter
LNCA_21_P0014621	0.902842	A	0.89487416	A	1.00553816508067	0	lncRNA	XR_110588	XR_110588	XR_110588	NA	Hs.660417	LOC100505734	uncharacterized LOC100505734	ENST00000498997	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505734 (LOC100505734), miscRNA [XR_110588]"	chr8:11173459-11173400	hs|8p23.1	Agilent_HUMAN_G3V2	XR_110588	XR_110588	chr8	 11173400	 11173459	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17032_PI429285431	1.9401605	A	2.1802144	A	0.846713678012584	0	lncRNA	18743-1_{1..609}	lnc-SLC25A26-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A26-3:2	chr3	 65178946	 65179554	+	lnc-SLC25A26-3	lnc-SLC25A26-3:2	XLOC_002688	linc-SLC25A26-3	NA	NA	NA	inter
CUST_6742_PI429285431	6.4179993	P	6.84482	P	0.743899328240169	0	lncRNA	6690-1_{1..1619}	"transcript_id ""ENST00000603095.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000603095.1"" | genecode_v17"	chr20	 57329407	 57331025	+	ENSG00000270279.1	ENST00000603095.1	RP4-806M20.5	RP4-806M20.5-001	NA	NA	NA	inter
LNCA_21_P0004861	3.9473438	P	3.940467	P	1.00477801300548	0	lncRNA	TCONS_00011746	NA	NA	NA	NA	XLOC_005211	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005211), lincRNA [TCONS_00011746]"	chr6:26500750-26500809	hs|6p22.2	Agilent_HUMAN_G3V2	TCONS_00011746	TCONS_00011746	chr6	 26500750	 26500809	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1873_PI429285431	0.8987708	A	0.9025322	A	0.997396191999057	0	lncRNA	1863-1_{1..393}	"transcript_id ""ENST00000507203.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507203.1"" | genecode_v17"	chr4	126597873	126598265	+	ENSG00000250149.1	ENST00000507203.1	RP11-399F2.2	RP11-399F2.2-001	NA	NA	NA	inter
CUST_28363_PI429285431	0.90082276	A	0.9109344	A	0.993015649982189	0	lncRNA	30013-1_{1..601}	n325675|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045402|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045402|-1.0000100|-0.3193570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325675|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045402|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045402|-1.0000100|-0.3193570	chr13	 84537222	 84537822	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15756_PI429285431	0.900516	A	0.8949158	A	1.00388930663987	0	lncRNA	17444-1_{1..2245}	lnc-AC068473.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-AC068473.1-2:1	chr18	 76737555	 76739799	-	lnc-AC068473.1-2	lnc-AC068473.1-2:1	XLOC_012900	linc-MBP-4	SALL3	NA	chr18:76740275-76749081	inter
CUST_29102_PI429285431	0.88336	A	0.9274294	A	0.969915252014359	0	lncRNA	30835-1_{1..219}	n326600|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023041|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023041|-1.1059400|-0.3980650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326600|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023041|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023041|-1.1059400|-0.3980650	chr1	 59134104	 59134322	-	NA	NA	NA	NA	MYSM1	NA	chr1:59124104-59144963	inner
LNCA_21_P0006639	6.045591	P	5.9530973	P	1.06621153844475	0	lncRNA	ENST00000436340	NA	NA	NA	NA	XLOC_008348	NA	ENST00000436340	NA	NA	"BROAD Institute lincRNA (XLOC_008348), lincRNA [TCONS_00017767]"	chr10:3309069-3309128	hs|10p15.2	Agilent_HUMAN_G3V2	ENST00000436340	ENST00000436340	chr10	  3309069	  3309128	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32878_PI429285431	2.0064318	A	1.962279	A	1.03107751741076	0	lncRNA	34506-1_{1..1018}	n339544|BC016306|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1986|NULL|-1.0662800|-0.3163053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339544|BC016306|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1986|NULL|-1.0662800|-0.3163053	chr21	 47656136	 47657153	+	NA	NA	NA	NA	LSS	"hg19_refFlat_MCM3AP:range=chr21:47655182-477052005'pad=0,hg19_refFlat_MCM3AP:range=chr21:47655182-477052005'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-62.70chr21:47646136-47648738"	NA	inner
CUST_13853_PI429285431	5.2436094	P	5.559685	P	0.803251903706665	0	lncRNA	15496-1_{1..447}	lnc-TUSC5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TUSC5-1:1	chr17	  1243936	  1244382	+	lnc-TUSC5-1	lnc-TUSC5-1:1	XLOC_012073	linc-WDR81-3	YWHAE	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70chr17:1247834-1254183"	NA	inter
CUST_21117_PI429285431	0.91392744	A	0.9884684	A	0.949644232853517	0	lncRNA	22743-1_{1..373}	lnc-FAM213B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM213B-2:1	chr1	  2567795	  2568167	+	lnc-FAM213B-2	lnc-FAM213B-2:1	ENSG00000237058.1	RP13-436F16.1	TTC34	NA	chr1:2572807-2578059	inter
LNCA_21_P0012721	0.91101116	A	0.90203005	A	1.00624464809667	0	lncRNA	ENST00000508199	NA	NA	NA	NA	XLOC_l2_010636	NA	ENST00000508199	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010636), lincRNA [TCONS_l2_00021571]"	chr4:37110941-37126663	hs|4p14	Agilent_HUMAN_G3V2	ENST00000508199	ENST00000508199	chr4	 37110941	 37126663	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10954_PI429285431	3.04505	A	3.528884	P	0.715074766689157	0	lncRNA	12495-1_{1..339}	lnc-RAD51AP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAD51AP1-1:1	chr12	  4675632	  4675970	+	lnc-RAD51AP1-1	lnc-RAD51AP1-1:1	XLOC_009625	linc-DYRK4	RAD51AP1	NA	chr12:4665632-4669213	inter
CUST_38674_PI429285431	2.4653354	A	3.3740692	P	0.532652375398136	0	lncRNA	39673-1_{1..2124}	n383978|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yky.3||-1.1889200|-0.3402239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n383978|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yky.3||-1.1889200|-0.3402239	chr21	 22114913	 22117036	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9256_PI429285431	1.3679787	A	0.91339296	A	1.37038925059165	0	lncRNA	10765-1_{1..496}	lnc-SNX10-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNX10-2:5	chr7	 26438866	 26439361	+	lnc-SNX10-2	lnc-SNX10-2:5	ENSG00000214870	AC004540.5	NA	NA	NA	inter
CUST_21697_PI429285431	1.3675026	A	1.5376917	A	0.888726184518806	0	lncRNA	23308-1_{1..335}	lnc-AC018816.3.1-8:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC018816.3.1-8:4	chr3	  6847076	  6847410	-	lnc-AC018816.3.1-8	lnc-AC018816.3.1-8:4	ENSG00000226258.2	GRM7-AS3	NA	NA	NA	inter
CUST_23433_PI429285431	8.78757	P	9.037908	P	0.840699429966812	0	lncRNA	25001-1_{1..1646}	lnc-USP6-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-USP6-1:3	chr17	  5016654	  5018299	+	lnc-USP6-1	lnc-USP6-1:3	ENSG00000234327.2	AC012146.7	ZNF232	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.52chr17:5009031-5026397"	NA	inner
CUST_41132_PI429285431	8.159456	P	8.144859	P	1.0101692281026	0	lncRNA	41916-1_{1..82}	ENST00000582537 ncrna:miRNA chromosome:GRCh37:HG243_PATCH:145449052:145449133:-1 gene:ENSG00000264381 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582537 ncrna:miRNA chromosome:GRCh37:HG243_PATCH:145449052:145449133:-1 gene:ENSG00000264381 gene_biotype:miRNA transcript_biotype:miRNA	chrHG243_PATCH	145449052	145449133	-	ENSG00000264381	ENST00000582537	NA	NA	NA	NA	NA	Unknown
CUST_39788_PI429285431	1.372172	A	0.89908427	A	1.38807712514456	0	lncRNA	40700-2_{3001..6000}	n406126|NR_003525|lncRNA|Homosapiens||RefGeneNoncode|NR_003525||11.2118000|-0.2319170	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406126|NR_003525|lncRNA|Homosapiens||RefGeneNoncode|NR_003525||11.2118000|-0.2319170	chr10	 27537781	 27540780	-	NA	NA	NA	NA	ACBD5	NA	chr10:27524781-27531068	inter
CUST_15156_PI429285431	1.0319341	A	0.91700953	A	1.08291842463939	0	lncRNA	16817-1_{1..1965}	lnc-PHTF2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHTF2-1:2	chr7	 77620237	 77622201	+	lnc-PHTF2-1	lnc-PHTF2-1:2	XLOC_006154	linc-GNAI1-2	NA	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-59.20"	NA	inter
CUST_44749_PI429285431	1.1166639	A	1.1015142	A	1.01055630054493	0	lncRNA	49297-1_{1..3000}	"gi|310119765|ref|XR_108644.1| PREDICTED: Homo sapiens uncharacterized LOC100505635 (LOC100505635), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119765|ref|XR_108644.1| PREDICTED: Homo sapiens uncharacterized LOC100505635 (LOC100505635), misc_RNA"	Chr6	 39852025	 39855024	-	100505635	XR_108644.2	NA	NA	NA	"hg19_refFlat_DAAM2:range=chr6:39824079-398698135'pad=0,hg19_refFlat_DAAM2:range=chr6:39824079-398698135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20"	NA	inter
CUST_28428_PI429285431	1.0564835	A	0.9108667	A	1.10620349093346	0	lncRNA	30087-1_{1..363}	n325751|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044693|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044693|-0.9191950|-0.3138837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325751|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044693|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044693|-0.9191950|-0.3138837	chr13	 41515862	 41516224	-	NA	NA	NA	NA	ELF1	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80chr13:41506055-41526383"	NA	inner
LNCA_21_P0007518	7.1391883	P	7.19621	P	0.961246469889439	0	lncRNA	TCONS_00020287	NA	NA	NA	NA	XLOC_009632	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009632), lincRNA [TCONS_00020287]"	chr12:6387555-6391312	hs|12p13.31	Agilent_HUMAN_G3V2	TCONS_00020287	TCONS_00020287	chr12	  6387555	  6391312	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48173_PI429285431	0.91249734	A	0.9179558	A	0.996223632319761	0	lncRNA	52038-1_{1..3000}	"gi|310113238|ref|XR_111785.1| PREDICTED: Homo sapiens uncharacterized LOC100132501 (LOC100132501), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310113238|ref|XR_111785.1| PREDICTED: Homo sapiens uncharacterized LOC100132501 (LOC100132501), misc_RNA"	NA	NA	NA	NA	NA	XR_111785.1	NA	NA	NA	NA	NA	Unknown
CUST_35943_PI429285431	8.944137	P	7.6425443	P	2.46500863428833	0	lncRNA	37305-1_{1..3000}	n344580|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_128|NULL|-1.2887000|-0.3528473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344580|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_128|NULL|-1.2887000|-0.3528473	chr4	 93176334	 93179333	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11163_PI429285431	9.883131	P	10.0460205	P	0.893234265013538	0	lncRNA	12721-1_{1..3000}	lnc-ARFGEF2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARFGEF2-2:1	chr20	 47103837	 47106836	+	lnc-ARFGEF2-2	lnc-ARFGEF2-2:1	XLOC_013552	linc-ARFGEF2-3	NA	NA	NA	inter
CUST_49533_PI429285431	0.91401374	A	0.91800225	A	0.997239193593764	0	lncRNA	53325-1_{1..960}	hg19_lincRNAsTranscripts_TCONS_l2_00024243 range=chr6:49755164-49788663 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024243 range=chr6:49755164-49788663 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 49755164	 49756123	+	NA	NA	NA	NA	PGK2	NA	chr6:49753364-49755053	inter
LNCA_21_P0008455	0.92092884	A	0.90954316	A	1.00792317552804	0	lncRNA	TCONS_00022781	NA	NA	NA	NA	XLOC_011064	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011064), lincRNA [TCONS_00022781]"	chr14:71760705-71760646	hs|14q24.2	Agilent_HUMAN_G3V2	TCONS_00022781	TCONS_00022781	chr14	 71760646	 71760705	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49990_PI429285431	2.6132016	A	2.443247	A	1.12502308091318	0	lncRNA	53728-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00026989 range=chr7:155029884-155045775 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026989 range=chr7:155029884-155045775 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	155032884	155035883	-	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60"	NA	inter
LNCA_21_P0011790	0.9205757	A	0.9081471	A	1.00865206364966	0	lncRNA	TCONS_l2_00013442	NA	NA	NA	NA	XLOC_l2_007178	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007178), lincRNA [TCONS_l2_00013442]"	chr2:3895136-3895195	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_l2_00013442	TCONS_l2_00013442	chr2	  3895136	  3895195	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51164_PI429285431	1.8518993	A	1.5193801	A	1.25921025909809	0	lncRNA	54786-2_{3001..4365}	hg19_lincRNAsTranscripts_TCONS_l2_00007712 range=chr14:48670212-48678944 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007712 range=chr14:48670212-48678944 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 48673212	 48674576	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30"	NA	inter
CUST_116_PI429285431	1.0488546	A	0.92207134	A	1.09185650085163	0	lncRNA	107-1_{1..809}	"transcript_id ""ENST00000589899.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589899.1"" | genecode_v17"	chr1	   714310	   715118	+	ENSG00000237491.3	ENST00000589899.1	RP11-206L10.9	RP11-206L10.9-003	NA	NA	NA	inter
CUST_30282_PI429285431	5.8026896	P	5.5831785	P	1.16433894882178	0	lncRNA	32058-1_{1..397}	n335178|AY425957|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254572|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254572|1.7540300|-0.1717116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335178|AY425957|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254572|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254572|1.7540300|-0.1717116	chr9	128322062	128322458	-	NA	NA	NA	NA	MAPKAP1	NA	chr9:128312062-128429989	inner
CUST_31597_PI429285431	2.1580265	A	1.8055936	A	1.27671180586213	0	lncRNA	33353-1_{1..671}	n338104|AL833846|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|492|NULL|-0.9050120|-0.1359251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338104|AL833846|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|492|NULL|-0.9050120|-0.1359251	chr22	 39867797	 39868467	-	NA	NA	NA	NA	MGAT3	NA	chr22:39857797-39878646	inner
CUST_33104_PI429285431	3.5455236	P	3.712438	P	0.890745750011485	0	lncRNA	34706-1_{1..3000}	n339795|BC034640|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2242|NULL|-0.6881290|-0.2588151	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339795|BC034640|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2242|NULL|-0.6881290|-0.2588151	chr18	 11666454	 11669453	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34581_PI429285431	8.778716	P	8.727194	P	1.03635767359496	0	lncRNA	36039-1_{1..573}	n341465|AF147436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3935|NULL|-1.2396000|-0.3250389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341465|AF147436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3935|NULL|-1.2396000|-0.3250389	chr8	 25361927	 25362499	+	NA	NA	NA	NA	CDCA2	NA	chr8:25351927-25365425	inner
CUST_9185_PI429285431	1.1507301	A	0.986495	A	1.12057180646762	0	lncRNA	10699-2_{3001..3174}	lnc-SBDS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SBDS-1:1	chr7	 66443233	 66443406	-	lnc-SBDS-1	lnc-SBDS-1:1	ENSG00000247634	ENST00000500273	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-39.11;hg19_refFlat_TMEM248:range=chr7:66406853-664205095'pad=0,hg19_refFlat_TMEM248:range=chr7:66406853-664205095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30"	NA	inter
CUST_18663_PI429285431	5.9623756	P	5.976171	P	0.990483330251935	0	lncRNA	20365-1_{1..819}	lnc-ARHGEF35-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARHGEF35-1:4	chr7	144052431	144053249	-	lnc-ARHGEF35-1	lnc-ARHGEF35-1:4	ENSG00000244479	RP4-798C17.6	ARHGEF5	NA	chr7:144052489-144062778	inner
CUST_9829_PI429285431	2.163365	A	2.8443801	A	0.623726257677995	0	lncRNA	11350-1_{1..1278}	lnc-WDR5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR5-2:1	chr9	137111386	137112663	+	lnc-WDR5-2	lnc-WDR5-2:1	XLOC_007596	linc-RXRA-2	NA	NA	NA	inter
CUST_37249_PI429285431	0.9233812	A	0.95202446	A	0.980341797749439	0	lncRNA	38356-1_{1..312}	n345680|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1229|NULL|-1.3144600|-0.0972664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345680|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1229|NULL|-1.3144600|-0.0972664	chr3	 75955944	 75956255	+	NA	NA	NA	NA	ROBO2	NA	chr3:75955845-75996776	inter
CUST_28469_PI429285431	0.9068056	A	1.0862451	A	0.883046000970253	0	lncRNA	30136-1_{1..263}	n325804|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044034|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044034|-1.2141200|-0.5631439	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325804|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044034|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044034|-1.2141200|-0.5631439	chr13	 19150829	 19151091	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10196_PI429285431	1.0638287	A	0.89651287	A	1.1229672314181	0	lncRNA	11721-1_{1..220}	lnc-FERMT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FERMT2-1:1	chr14	 53419036	 53419255	-	lnc-FERMT2-1	lnc-FERMT2-1:1	XLOC_011026	linc-FERMT2	FERMT2	NA	chr14:53409036-53417815	inter
CUST_28288_PI429285431	1.2941035	A	1.3643913	A	0.952447977379012	0	lncRNA	29924-1_{1..1566}	n325584|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000269085|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000269085|0.2633770|-0.2824357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325584|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000269085|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000269085|0.2633770|-0.2824357	chr16	 83874064	 83875629	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60"	NA	inter
CUST_51501_PI429285431	2.950475	A	2.3335385	A	1.53361515635265	0	lncRNA	55077-1_{1..1640}	hg19_lincRNAsTranscripts_TCONS_l2_00010283 range=chr16:75535386-75547718 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010283 range=chr16:75535386-75547718 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 75535386	 75537025	-	NA	NA	NA	NA	CHST6	NA	chr16:75525386-75528926	inter
CUST_14615_PI429285431	0.90851504	A	0.9166893	A	0.994350056036062	0	lncRNA	16284-1_{1..3000}	lnc-MCM5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MCM5-1:1	chr22	 35850421	 35853420	+	lnc-MCM5-1	lnc-MCM5-1:1	XLOC_014219	linc-RASD2	NA	NA	NA	inter
CUST_7990_PI429285431	0.9144141	A	0.9232734	A	0.993878017353179	0	lncRNA	9601-1_{1..719}	lnc-CNTRL-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CNTRL-1:4	chr9	123613516	123614234	+	lnc-CNTRL-1	lnc-CNTRL-1:4	ENSG00000226752	RP11-27I1.2	PSMD5	NA	chr9:123603516-123605206	inter
CUST_18769_PI429285431	0.92165637	A	1.2338665	A	0.805406974160369	0	lncRNA	20465-1_{1..428}	lnc-ANTXRL-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANTXRL-1:6	chr10	 47681697	 47682124	+	lnc-ANTXRL-1	lnc-ANTXRL-1:6	ENSG00000198250	ANTXRL	NA	NA	NA	inter
CUST_4037_PI429285431	2.61389	A	1.2302477	A	2.60926287780369	0	lncRNA	3999-1_{1..860}	"transcript_id ""ENST00000530270.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530270.1"" | genecode_v17"	chr11	 82783397	 82784256	+	ENSG00000246067.2	ENST00000530270.1	RP11-113K21.5	RP11-113K21.5-008	RAB30	NA	chr11:82773397-82782884	inter
CUST_50080_PI429285431	1.261978	A	1.1839845	A	1.05554896189714	0	lncRNA	53814-1_{1..2029}	hg19_lincRNAsTranscripts_TCONS_l2_00028293 range=chr8:90620773-90635634 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028293 range=chr8:90620773-90635634 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 90620773	 90622801	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49203_PI429285431	5.258998	P	4.519149	P	1.67000103867591	0	lncRNA	53023-5_{12001..15000}	hg19_lincRNAsTranscripts_TCONS_l2_00020851 range=chr4:159178384-159202705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020851 range=chr4:159178384-159202705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	159190384	159193383	+	NA	NA	NA	NA	TMEM144	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.81;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60chr4:159168384-159176439"	NA	inter
CUST_42564_PI429285431	2.034283	A	0.89940053	A	2.19600672130775	0	lncRNA	45389-1_{1..72}	ENST00000516361 ncrna:snoRNA chromosome:GRCh37:3:121964613:121964684:1 gene:ENSG00000252170 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516361 ncrna:snoRNA chromosome:GRCh37:3:121964613:121964684:1 gene:ENSG00000252170 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	121964613	121964684	+	ENSG00000252170	ENST00000516361	NA	NA	CASR	NA	chr3:121954613-121974684	inner
CUST_31623_PI429285431	0.90660924	A	0.9050377	A	1.00108990203215	0	lncRNA	33379-1_{1..1804}	n338143|AF007143|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|531|NULL|-1.0777200|-0.2291241	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338143|AF007143|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|531|NULL|-1.0777200|-0.2291241	chr15	 92990452	 92992255	+	NA	NA	NA	NA	ST8SIA2	NA	chr15:92980452-93002236	inner
CUST_6482_PI429285431	0.91428757	A	0.99232304	A	0.947346778910884	0	lncRNA	6424-1_{1..568}	"transcript_id ""ENST00000589603.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589603.1"" | genecode_v17"	chr19	 36099187	 36099754	-	ENSG00000267626.1	ENST00000589603.1	AC002115.9	AC002115.9-001	HAUS5	NA	chr19:36103646-36113568	inter
CUST_18387_PI429285431	0.90492684	A	0.9090136	A	0.99717128221138	0	lncRNA	20113-1_{1..816}	lnc-OSBP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-OSBP-1:1	chr11	 59333238	 59334053	-	lnc-OSBP-1	lnc-OSBP-1:1	ENSG00000255008	AP000442.4	OSBP	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chr11:59341871-59343547"	NA	inter
CUST_23194_PI429285431	1.115696	A	0.99613047	A	1.08640763979738	0	lncRNA	24766-1_{1..1021}	lnc-IL6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL6-2:1	chr7	 22898190	 22899210	+	lnc-IL6-2	lnc-IL6-2:1	ENSG00000228649.2	AC005682.5	NA	NA	NA	inter
CUST_3912_PI429285431	0.9163091	A	0.9213805	A	0.996490944564428	0	lncRNA	3882-1_{1..429}	"transcript_id ""ENST00000529017.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000529017.1"" | genecode_v17"	chr11	 38639814	 38640242	-	ENSG00000255175.1	ENST00000529017.1	RP11-277K23.1	RP11-277K23.1-002	NA	NA	NA	inter
CUST_31901_PI429285431	0.89651626	A	1.1619838	A	0.831929084407167	0	lncRNA	33632-1_{1..1684}	n338456|AX747894|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|853|NULL|-0.6807040|-0.1409838	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338456|AX747894|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|853|NULL|-0.6807040|-0.1409838	chr14	 92914812	 92916495	-	NA	NA	NA	NA	SLC24A4	"hg19_refFlat_SLC24A4:range=chr14:92790175-929599725'pad=0,hg19_refFlat_SLC24A4:range=chr14:92790175-929599725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SLC24A4:range=chr14:92792274-929599725'pad=0,hg19_refFlat_SLC24A4:range=chr14:92792274-929599725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80chr14:92904812-92926506"	NA	inner
CUST_49239_PI429285431	0.9229989	A	1.4138621	A	0.711599203058133	0	lncRNA	53060-1_{1..570}	hg19_lincRNAsTranscripts_TCONS_l2_00022217 range=chr5:17802554-17955922 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022217 range=chr5:17802554-17955922 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 17802554	 17803123	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43450_PI429285431	3.8704739	P	3.7565887	P	1.08213853176957	0	lncRNA	48257-1_{1..3000}	"gi|371123537|ref|NR_045789.1| Homo sapiens NOP2/Sun domain family, member 4 (NSUN4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371123537|ref|NR_045789.1| Homo sapiens NOP2/Sun domain family, member 4 (NSUN4), transcript variant 4, non-coding RNA"	Chr1	 46805849	 46808848	+	387338	NR_045789.1	NA	NA	NA	"hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-17.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70"	NA	inter
CUST_43591_PI429285431	7.5046234	P	6.646874	P	1.81220906361622	0	lncRNA	48356-1_{1..3000}	"gi|374253758|ref|NR_046188.1| Homo sapiens neuroblastoma breakpoint family, member 24 (NBPF24), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374253758|ref|NR_046188.1| Homo sapiens neuroblastoma breakpoint family, member 24 (NBPF24), transcript variant 2, non-coding RNA"	NW_003871055.3	  4917459	  4920458	-	728912	NR_046188.2	NA	NA	NA	NA	NA	Unknown
CUST_31522_PI429285431	1.996006	A	0.9082707	A	2.1254013526774	0	lncRNA	33281-1_{1..2926}	n338010|BC050067|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|397|NULL|-1.1985100|-0.1992277	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338010|BC050067|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|397|NULL|-1.1985100|-0.1992277	chr15	 74418255	 74421180	-	NA	NA	NA	NA	ISLR2	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50chr15:74421715-74429143"	NA	inter
CUST_24628_PI429285431	1.0222036	A	0.92250174	A	1.07155199818226	0	lncRNA	26177-1_{1..741}	lnc-KLF7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLF7-1:2	chr2	208394436	208395176	-	lnc-KLF7-1	lnc-KLF7-1:2	ENSG00000223725.1	AC007879.5	CREB1	NA	chr2:208394616-208404515	inter
CUST_49694_PI429285431	6.3624406	P	6.5774145	P	0.861561746206415	0	lncRNA	53471-1_{1..419}	hg19_lincRNAsTranscripts_TCONS_l2_00026375 range=chr7:6897191-6899423 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026375 range=chr7:6897191-6899423 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	  6897191	  6897609	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10180_PI429285431	0.8938795	A	0.89798164	A	0.997160651820245	0	lncRNA	11706-1_{1..739}	lnc-LCLAT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LCLAT1-2:1	chr2	 31082446	 31083184	+	lnc-LCLAT1-2	lnc-LCLAT1-2:1	XLOC_001414	linc-EHD3-1	NA	NA	NA	inter
CUST_2200_PI429285431	4.6418204	P	5.8547297	P	0.431397792729059	0	lncRNA	2192-1_{1..424}	"transcript_id ""ENST00000514661.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514661.1"" | genecode_v17"	chr5	 72742184	 72742607	+	ENSG00000247993.2	ENST00000514661.1	RP11-79P5.2	RP11-79P5.2-001	FOXD1	NA	chr5:72742083-72744352	inner
CUST_10702_PI429285431	0.9033259	A	1.6802216	A	0.583621242428263	0	lncRNA	12238-1_{1..703}	lnc-GIN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GIN1-1:1	chr5	102589029	102589731	-	lnc-GIN1-1	lnc-GIN1-1:1	XLOC_004942	linc-GIN1-2	C5orf30	NA	chr5:102594442-102599507	inter
CUST_28150_PI429285431	1.8638031	A	0.88923687	A	1.96505028356325	0	lncRNA	29775-1_{1..455}	n325426|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323609|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323609|-1.1933600|-0.4811361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325426|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323609|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323609|-1.1933600|-0.4811361	chr2	 13595248	 13595702	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47079_PI429285431	8.332284	P	8.627251	P	0.815090976463798	0	lncRNA	51163-1_{1..2268}	"gi|224809416|ref|NR_027307.1| Homo sapiens MEF2BNB-MEF2B readthrough (MEF2BNB-MEF2B), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224809416|ref|NR_027307.1| Homo sapiens MEF2BNB-MEF2B readthrough (MEF2BNB-MEF2B), transcript variant 2, non-coding RNA"	Chr19	 19256376	 19258643	-	4207	NR_027307.1	NA	NA	NA	NA	NA	inter
CUST_42368_PI429285431	5.4973598	P	5.959173	P	0.726073145739345	0	lncRNA	45044-1_{1..127}	ENST00000516953 ncrna:snoRNA chromosome:GRCh37:4:82849466:82849592:1 gene:ENSG00000252762 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516953 ncrna:snoRNA chromosome:GRCh37:4:82849466:82849592:1 gene:ENSG00000252762 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	 82849466	 82849592	+	ENSG00000252762	ENST00000516953	NA	NA	NA	NA	NA	inter
CUST_45544_PI429285431	1.5661399	A	1.0270305	A	1.45307523252678	0	lncRNA	49945-2_{3001..4014}	"gi|335353776|ref|NR_038374.1| Homo sapiens uncharacterized LOC100507605 (LOC100507605), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|335353776|ref|NR_038374.1| Homo sapiens uncharacterized LOC100507605 (LOC100507605), transcript variant 1, non-coding RNA"	Chr10	 29081240	 29082253	-	100507605	NR_038374.1	NA	NA	NA	NA	NA	inter
CUST_43526_PI429285431	5.7000303	P	4.1375537	P	2.95360438507877	0	lncRNA	48311-1_{1..3000}	"gi|387598056|ref|NR_048570.1| Homo sapiens exostoses (multiple)-like 2 (EXTL2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387598056|ref|NR_048570.1| Homo sapiens exostoses (multiple)-like 2 (EXTL2), transcript variant 6, non-coding RNA"	Chr1	101337928	101340927	-	2135	NR_048570.1	NA	NA	NA	NA	NA	inter
CUST_43245_PI429285431	1.0706862	A	0.89846885	A	1.12678897271131	0	lncRNA	48062-1_{1..491}	ENST00000586983 havana:sense_intronic chromosome:GRCh37:19:11836776:11841598:-1 gene:ENSG00000266922 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000586983 havana:sense_intronic chromosome:GRCh37:19:11836776:11841598:-1 gene:ENSG00000266922 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 11836776	 11837266	-	ENSG00000266922	ENST00000586983	NA	NA	ZNF823	NA	chr19:11832080-11849760	inner
CUST_45609_PI429285431	1.8011256	A	0.90131605	A	1.865819660185	0	lncRNA	49995-2_{3001..4965}	"gi|372220201|ref|NR_045662.3| Homo sapiens myopalladin (MYPN), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372220201|ref|NR_045662.3| Homo sapiens myopalladin (MYPN), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_045662.3	NA	NA	NA	NA	NA	Unknown
CUST_6941_PI429285431	3.551937	P	3.160448	P	1.31174655401832	0	lncRNA	6890-1_{1..576}	"transcript_id ""ENST00000452952.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452952.1"" | genecode_v17"	chr22	 21676237	 21676812	-	ENSG00000206142.5	ENST00000452952.1	FAM230C	FAM230C-007	RIMBP3B	NA	chr22:21666237-21689256	inter
LNCA_19_P00321722	11.557524	P	11.484098	P	1.05221243135897	0	lncRNA	ENST00000475791	NA	NA	NA	NA	XLOC_006555	NA	ENST00000475791	NA	NA	"BROAD Institute lincRNA (XLOC_006555), lincRNA [TCONS_00013220]"	chr7:106102571-106102512	hs|7q22.3	Agilent_HUMAN_G3V2	ENST00000475791	ENST00000475791	chr7	106102512	106102571	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44298_PI429285431	6.687401	P	7.000753	P	0.804769759655935	0	lncRNA	48931-1_{1..1505}	"gi|334085189|ref|NR_038302.1| Homo sapiens uncharacterized LOC100505687 (LOC100505687), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|334085189|ref|NR_038302.1| Homo sapiens uncharacterized LOC100505687 (LOC100505687), transcript variant 2, non-coding RNA"	Chr3	183165396	183166900	+	100505687	NR_038302.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60"	NA	inter
CUST_3033_PI429285431	2.5896935	M	3.2595484	P	0.628569902912147	0	lncRNA	3012-1_{1..874}	"transcript_id ""ENST00000523852.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523852.1"" | genecode_v17"	chr8	 20810638	 20811511	+	ENSG00000253147.1	ENST00000523852.1	RP11-369E15.4	RP11-369E15.4-001	NA	NA	NA	inter
CUST_19710_PI429285431	0.91674113	A	1.2760496	A	0.779538147755594	0	lncRNA	21367-1_{1..544}	lnc-RABEP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RABEP2-2:1	chr16	 28977737	 28978280	-	lnc-RABEP2-2	lnc-RABEP2-2:1	ENSG00000260853.1	RP11-264B17.2	NFATC2IP	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr16:28967737-28977786"	NA	inner
CUST_6154_PI429285431	3.1526914	P	3.4616516	P	0.807223343276058	0	lncRNA	6080-1_{1..399}	"transcript_id ""ENST00000598549.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598549.1"" | genecode_v17"	chr18	 36239213	 36239611	-	ENSG00000268566.1	ENST00000598549.1	RP11-687D19.1	RP11-687D19.1-003	NA	NA	NA	inter
LNCA_21_P0008708	0.90224814	A	0.8951472	A	1.0049341294632	0	lncRNA	TCONS_00023589	NA	NA	NA	NA	XLOC_011403	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011403), lincRNA [TCONS_00023589]"	chr15:24586030-24585971	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023589	TCONS_00023589	chr15	 24585971	 24586030	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009382	11.787563	P	11.580839	P	1.1540646138859	0	lncRNA	AB593144	NA	AB593144	NA	NA	XLOC_012142	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012142), lincRNA [TCONS_00025864]"	chr17:20979250-20988112	hs|17p11.2	Agilent_HUMAN_G3V2	AB593144	AB593144	chr17	 20979250	 20988112	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34579_PI429285431	3.498585	P	7.7744102	P	0.0516236085057921	0	lncRNA	36037-2_{3001..4289}	n341462|S40832|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3932|NULL|2.3176100|-0.1444044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341462|S40832|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3932|NULL|2.3176100|-0.1444044	chr8	 22548237	 22549525	-	NA	NA	NA	NA	EGR3	NA	chr8:22545174-22550815	inner
CUST_28644_PI429285431	1.2906375	A	0.9381739	A	1.27673897409129	0	lncRNA	30335-1_{1..347}	n326022|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047456|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047456|-1.2388700|-0.2869972	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326022|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047456|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047456|-1.2388700|-0.2869972	chr10	 32022017	 32022363	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13974_PI429285431	2.5547285	A	2.118145	A	1.35339550304906	0	lncRNA	15619-1_{1..357}	lnc-USP31-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP31-2:1	chr16	 22959564	 22959920	-	lnc-USP31-2	lnc-USP31-2:1	XLOC_011900	linc-CDR2-1	NA	NA	NA	inter
LNCA_21_P0010218	0.9016273	A	0.8941558	A	1.00519228257873	0	lncRNA	XR_109685	XR_109685	XR_109685	NA	Hs.552028	LOC100505827	uncharacterized LOC100505827	ENST00000456613	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505827 (LOC100505827), miscRNA [XR_109685]"	chr21:46798178-46798119	hs|21q22.3	Agilent_HUMAN_G3V2	XR_109685	XR_109685	chr21	 46798119	 46798178	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14898_PI429285431	6.1739	P	6.4922504	P	0.801986357234284	0	lncRNA	16561-2_{3001..3141}	lnc-AC110619.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC110619.2.1-1:1	chr2	241330068	241330208	-	lnc-AC110619.2.1-1	lnc-AC110619.2.1-1:1	XLOC_002543	linc-OTOS-1	NA	NA	NA	inter
CUST_24517_PI429285431	1.8553374	A	1.524511	A	1.25773361920275	0	lncRNA	26068-1_{1..615}	lnc-CA12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CA12-1:1	chr15	 63761505	 63762119	-	lnc-CA12-1	lnc-CA12-1:1	ENSG00000259268.1	AC007950.1	NA	NA	NA	inter
CUST_35193_PI429285431	3.364849	P	3.8895447	P	0.69510570941412	0	lncRNA	36594-1_{1..2140}	n342177|AK095067|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4664|NULL|0.4106020|-0.2603868	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342177|AK095067|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4664|NULL|0.4106020|-0.2603868	chr6	167064993	167067132	+	NA	NA	NA	NA	RPS6KA2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90chr6:167054993-167077133"	NA	inner
CUST_22384_PI429285431	0.88707995	A	1.1228881	A	0.849209167016973	0	lncRNA	23974-1_{1..637}	lnc-NSUN6-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-NSUN6-2:4	chr10	 18948122	 18948758	-	lnc-NSUN6-2	lnc-NSUN6-2:4	ENSG00000152487.5	RP11-139J15.2	NSUN6	NA	chr10:18938122-18940550	inter
CUST_5143_PI429285431	1.2805133	A	1.0315293	A	1.18836992553964	0	lncRNA	5083-1_{1..298}	"transcript_id ""ENST00000558262.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558262.1"" | genecode_v17"	chr15	 36733819	 36734116	-	ENSG00000259737.2	ENST00000558262.1	RP11-475A13.1	RP11-475A13.1-003	NA	NA	NA	inter
LNCA_21_P0011949	6.1240897	P	5.3806553	P	1.6741565032543	0	lncRNA	TCONS_l2_00014793	NA	NA	NA	NA	XLOC_l2_008203	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008203), lincRNA [TCONS_l2_00014793]"	chr2:112101640-111982735	hs|2q13	Agilent_HUMAN_G3V2	TCONS_l2_00014793	TCONS_l2_00014793	chr2	111982735	112101640	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41068_PI429285431	1.9804722	A	1.7716844	A	1.15571670449995	0	lncRNA	41741-1_{1..100}	ENST00000384820 ncrna:miRNA chromosome:GRCh37:10:102734742:102734841:1 gene:ENSG00000207551 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384820 ncrna:miRNA chromosome:GRCh37:10:102734742:102734841:1 gene:ENSG00000207551 gene_biotype:miRNA transcript_biotype:miRNA	chr10	102734742	102734841	+	ENSG00000207551	ENST00000384820	NA	NA	FAM178A	NA	chr10:102724742-102724891	inner
CUST_23521_PI429285431	0.89856255	A	0.9018891	A	0.99769686753539	0	lncRNA	25088-1_{1..432}	lnc-TNS3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TNS3-1:1	chr7	 47118675	 47119106	-	lnc-TNS3-1	lnc-TNS3-1:1	ENSG00000229192.2	AC004870.3	NA	NA	NA	inter
CUST_3467_PI429285431	2.9114218	A	2.4708824	A	1.35711163437369	0	lncRNA	3438-1_{1..445}	"transcript_id ""ENST00000439796.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439796.1"" | genecode_v17"	chr9	 91624949	 91625393	-	ENSG00000231632.1	ENST00000439796.1	RP11-82L18.4	RP11-82L18.4-001	S1PR3	NA	chr9:91614949-91619925	inner
CUST_35723_PI429285431	0.987946	A	1.0903869	A	0.931455724930416	0	lncRNA	37141-1_{1..1531}	n342889|AF113678|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5396|NULL|-0.8929370|-0.3703087	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342889|AF113678|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5396|NULL|-0.8929370|-0.3703087	chr12	 21083247	 21084777	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35080_PI429285431	3.2998583	P	1.0653572	A	4.70599928053701	0	lncRNA	36489-1_{1..1435}	n342042|BC064611|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4523|NULL|5.0216200|-0.3935283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342042|BC064611|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4523|NULL|5.0216200|-0.3935283	chr6	 79654799	 79656233	-	NA	NA	NA	NA	PHIP	NA	chr6:79644799-79685673	inner
CUST_40194_PI429285431	7.6654034	P	7.6544914	P	1.00759229847707	0	lncRNA	41027-1_{1..3000}	n408014|NR_027774|lncRNA|Homosapiens||RefGeneNoncode|NR_027774||0.2856030|-0.2387937	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408014|NR_027774|lncRNA|Homosapiens||RefGeneNoncode|NR_027774||0.2856030|-0.2387937	chr17	   128327	   131326	-	NA	NA	NA	NA	RPH3AL	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80chr17:118327-193214"	NA	inner
CUST_27319_PI429285431	3.2777026	P	3.9226172	P	0.639530646387294	0	lncRNA	28879-1_{1..387}	n324473|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041294|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041294|-1.2614000|-0.5335369	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324473|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041294|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041294|-1.2614000|-0.5335369	chr6	 79370902	 79371288	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15028_PI429285431	4.2028794	P	5.0046263	P	0.573654142616563	0	lncRNA	16691-1_{1..922}	lnc-FSCN2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FSCN2-1:2	chr17	 79494083	 79495004	+	lnc-FSCN2-1	lnc-FSCN2-1:2	XLOC_012338	linc-FSCN2-1	FSCN2	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60chr17:79495417-79504105"	NA	inter
CUST_33646_PI429285431	4.363881	P	3.389912	P	1.96423698340818	0	lncRNA	35211-1_{1..3000}	n340408|BC035585|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2869|NULL|17.8124000|-0.0829106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340408|BC035585|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2869|NULL|17.8124000|-0.0829106	chr5	 14144543	 14147542	+	NA	NA	NA	NA	TRIO	NA	chr5:14143829-14429987	inner
CUST_47515_PI429285431	0.89653116	A	0.89319265	A	1.0023167583406	0	lncRNA	51526-1_{1..372}	"gi|397139772|ref|XR_158964.1| PREDICTED: Homo sapiens uncharacterized LOC100131802 (LOC100131802), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139772|ref|XR_158964.1| PREDICTED: Homo sapiens uncharacterized LOC100131802 (LOC100131802), misc_RNA"	NA	NA	NA	NA	NA	XR_158964.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40"	NA	Unknown
CUST_47151_PI429285431	4.0147357	P	3.4335217	P	1.49610766478517	0	lncRNA	51231-1_{1..3000}	"gi|296531369|ref|NR_033679.1| Homo sapiens caspase recruitment domain family, member 8 (CARD8), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|296531369|ref|NR_033679.1| Homo sapiens caspase recruitment domain family, member 8 (CARD8), transcript variant 8, non-coding RNA"	Chr19	 48711343	 48714342	-	22900	NR_033679.1	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20"	NA	inter
CUST_18943_PI429285431	0.9119583	A	0.9309076	A	0.986951229271226	0	lncRNA	20634-1_{1..2819}	lnc-COLEC10-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COLEC10-1:3	chr8	120255657	120258475	+	lnc-COLEC10-1	lnc-COLEC10-1:3	ENSG00000147676	MAL2	MAL2	NA	chr8:120245657-120257913	inner
CUST_18280_PI429285431	1.3523892	A	1.8546115	A	0.706018405821993	0	lncRNA	20011-1_{1..452}	lnc-ATIC-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ATIC-9:1	chr2	215826534	215826985	+	lnc-ATIC-9	lnc-ATIC-9:1	ENSG00000229267	AC072062.1	ABCA12	NA	chr2:215816534-215836786	inner
CUST_21854_PI429285431	0.90073913	A	0.8915699	A	1.00637586576908	0	lncRNA	23464-1_{1..489}	lnc-PSMG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PSMG1-1:1	chr21	 40591328	 40591816	-	lnc-PSMG1-1	lnc-PSMG1-1:1	ENSG00000237373.1	BRWD1-IT1	BRWD1	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80chr21:40581328-40601731"	NA	inner
CUST_32919_PI429285431	1.2028234	A	1.4392395	A	0.848851386658314	0	lncRNA	34544-1_{1..1369}	n339592|AK130206|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2036|NULL|-0.9046490|-0.1902958	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339592|AK130206|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2036|NULL|-0.9046490|-0.1902958	chr20	 20235475	 20236843	-	NA	NA	NA	NA	C20orf26	NA	chr20:20225475-20249036	inner
CUST_7730_PI429285431	4.3300943	P	4.801323	P	0.72134998397624	0	lncRNA	9361-1_{1..512}	lnc-APAF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-APAF1-1:1	chr12	 99370170	 99370681	+	lnc-APAF1-1	lnc-APAF1-1:1	ENSG00000257458	RP11-473C19.1	ANKS1B	NA	chr12:99360170-99380434	inner
CUST_593_PI429285431	1.0784926	A	0.91493756	A	1.12004371393267	0	lncRNA	585-1_{1..487}	"transcript_id ""ENST00000446145.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446145.1"" | genecode_v17"	chr1	223354486	223354972	+	ENSG00000226601.1	ENST00000446145.1	RP11-239E10.3	RP11-239E10.3-001	NA	NA	NA	inter
CUST_35790_PI429285431	6.6204987	P	6.5725784	P	1.03377362505576	0	lncRNA	37201-1_{1..1447}	n344471|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_19|NULL|-1.3024900|-0.1482372	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344471|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_19|NULL|-1.3024900|-0.1482372	chr1	  9242246	  9243692	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20715_PI429285431	1.3591377	A	1.1291595	A	1.17281722711598	0	lncRNA	22350-1_{1..486}	lnc-GLOD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLOD4-1:1	chr17	   693519	   694004	-	lnc-GLOD4-1	lnc-GLOD4-1:1	ENSG00000262434.1	RP11-676J12.8	NXN	NA	chr17:702553-703765	inner
CUST_30169_PI429285431	1.0394136	A	2.0564163	A	0.494141900964224	0	lncRNA	31943-1_{1..520}	n334861|AJ315537|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247165_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247165_04|2.0857900|-0.1039454	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334861|AJ315537|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247165_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247165_04|2.0857900|-0.1039454	chr6	 31683133	 31683652	+	NA	NA	NA	NA	LY6G6C	NA	chr6:31686425-31689510	inner
CUST_31553_PI429285431	1.8493474	A	1.4626484	A	1.30739854797473	0	lncRNA	33311-1_{1..543}	n338043|AL355738|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|430|NULL|-1.2371400|-0.3501653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338043|AL355738|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|430|NULL|-1.2371400|-0.3501653	chr15	 77777398	 77777940	-	NA	NA	NA	NA	HMG20A	NA	chr15:77767398-77777945	inner
CUST_28745_PI429285431	0.9115525	A	1.1725363	A	0.834518651899658	0	lncRNA	30448-1_{1..318}	n326142|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096173|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096173|-1.0850900|-0.5691102	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326142|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096173|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096173|-1.0850900|-0.5691102	chr1	241321315	241321632	-	NA	NA	NA	NA	RGS7	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-15.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80chr1:241311315-241332515"	NA	inner
CUST_25958_PI429285431	0.8968802	A	0.89358056	A	1.00228975365392	0	lncRNA	27478-1_{1..407}	lnc-TRUB2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRUB2-3:1	chr9	131235212	131235618	-	lnc-TRUB2-3	lnc-TRUB2-3:1	ENSG00000225951.1	RP11-339B21.9	ODF2	"hg19_refFlat_ODF2:range=chr9:131219685-1312570105'pad=0,hg19_refFlat_ODF2:range=chr9:131219685-1312570105'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_ODF2:range=chr9:131218824-1312570105'pad=0,hg19_refFlat_ODF2:range=chr9:131218824-1312570105'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_ODF2:range=chr9:131218371-1312625345'pad=0,hg19_refFlat_ODF2:range=chr9:131218371-1312625345'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_ODF2:range=chr9:131222838-1312570105'pad=0,hg19_refFlat_ODF2:range=chr9:131222838-1312570105'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_ODF2:range=chr9:131218371-1312570105'pad=0,hg19_refFlat_ODF2:range=chr9:131218371-1312570105'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_ODF2:range=chr9:131222838-1312625345'pad=0,hg19_refFlat_ODF2:range=chr9:131222838-1312625345'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_ODF2:range=chr9:131217476-1312570105'pad=0,hg19_refFlat_ODF2:range=chr9:131217476-1312570105'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_ODF2:range=chr9:131219685-1312625345'pad=0,hg19_refFlat_ODF2:range=chr9:131219685-1312625345'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10chr9:131225212-131245291"	NA	inner
CUST_16196_PI429285431	2.147645	A	1.6636422	A	1.39861879719212	0	lncRNA	17902-1_{1..1429}	lnc-PLEKHA5-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLEKHA5-3:1	chr12	 19806176	 19807604	+	lnc-PLEKHA5-3	lnc-PLEKHA5-3:1	XLOC_009683	linc-PDE3A-3	NA	NA	NA	inter
CUST_35904_PI429285431	2.1794956	A	1.9311103	A	1.18787686952452	0	lncRNA	37279-3_{6001..9000}	n344554|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_102|NULL|-1.4895300|-0.3671434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344554|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_102|NULL|-1.4895300|-0.3671434	chr4	124566705	124569704	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11765_PI429285431	2.331323	A	2.5502818	A	0.859185290921552	0	lncRNA	13345-1_{1..497}	lnc-ARHGEF5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGEF5-1:2	chr7	144087664	144088160	+	lnc-ARHGEF5-1	lnc-ARHGEF5-1:2	XLOC_006281	linc-CNTNAP2-3	NOBOX	NA	chr7:144094333-144098050	inter
CUST_40945_PI429285431	2.2081664	A	2.756593	A	0.683765434949702	0	lncRNA	41624-1_{1..1206}	n410915|NR_038377|lncRNA|Homosapiens||RefGeneNoncode|NR_038377||-1.0528800|-0.3697067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410915|NR_038377|lncRNA|Homosapiens||RefGeneNoncode|NR_038377||-1.0528800|-0.3697067	chr4	    49162	    50367	-	NA	NA	NA	NA	ZNF595	NA	chr4:53227-88099	inner
LNCA_21_P0007650	0.9187403	A	0.90844685	A	1.00716038971574	0	lncRNA	TCONS_00020612	NA	NA	NA	NA	XLOC_009927	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009927), lincRNA [TCONS_00020612]"	chr12:124725503-124725562	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00020612	TCONS_00020612	chr12	124725503	124725562	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1549_PI429285431	1.688696	A	1.90843	A	0.858723750880372	0	lncRNA	1536-1_{1..490}	"transcript_id ""ENST00000469060.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000469060.1"" | genecode_v17"	chr3	167621186	167621675	+	ENSG00000244227.1	ENST00000469060.1	RP11-298O21.5	RP11-298O21.5-005	NA	NA	NA	inter
LNCA_21_P0008161	4.7451143	P	4.885599	P	0.907214308735997	0	lncRNA	TCONS_00022001	NA	NA	NA	NA	XLOC_010601	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010601), lincRNA [TCONS_00022001]"	chr13:48465044-48464985	hs|13q14.2	Agilent_HUMAN_G3V2	TCONS_00022001	TCONS_00022001	chr13	 48464985	 48465044	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24082_PI429285431	3.7311206	P	3.833509	P	0.931489621432415	0	lncRNA	25632-1_{1..508}	lnc-TRMT2A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRMT2A-2:1	chr22	 20053402	 20053909	-	lnc-TRMT2A-2	lnc-TRMT2A-2:1	ENSG00000236540.1	AC006547.13	C22orf25	NA	chr22:20043402-20053447	inner
CUST_4745_PI429285431	0.89907616	A	0.8983693	A	1.00049007806508	0	lncRNA	4689-1_{1..285}	"transcript_id ""ENST00000552425.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552425.1"" | genecode_v17"	chr14	 25593693	 25593977	-	ENSG00000258098.1	ENST00000552425.1	RP11-89K22.1	RP11-89K22.1-001	NA	NA	NA	inter
CUST_1104_PI429285431	0.9147205	A	0.9166594	A	0.998656959618666	0	lncRNA	1093-1_{1..1113}	"transcript_id ""ENST00000599187.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599187.1"" | genecode_v17"	chr2	145425587	145426699	+	ENSG00000226674.3	ENST00000599187.1	AC074093.1	AC074093.1-035	NA	NA	NA	inter
CUST_45813_PI429285431	0.920771	A	0.91126114	A	1.00661350593109	0	lncRNA	50149-1_{1..3000}	"gi|387849361|ref|NR_049733.1| Homo sapiens membrane-spanning 4-domains, subfamily A, member 14 (MS4A14), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387849361|ref|NR_049733.1| Homo sapiens membrane-spanning 4-domains, subfamily A, member 14 (MS4A14), transcript variant 7, non-coding RNA"	Chr11	 60163487	 60166486	+	84689	NR_049733.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004892	1.8353527	A	0.9157885	A	1.89154382180155	0	lncRNA	TCONS_00011845	NA	NA	NA	NA	XLOC_005332	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005332), lincRNA [TCONS_00011845]"	chr6:58182936-58182995	hs|6p11.2	Agilent_HUMAN_G3V2	TCONS_00011845	TCONS_00011845	chr6	 58182936	 58182995	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38997_PI429285431	9.101891	P	7.8199205	P	2.43170884266004	0	lncRNA	39978-1_{1..1844}	n385278|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vpe.2||3.4612400|-0.2608289	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385278|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vpe.2||3.4612400|-0.2608289	chr7	129470574	129472417	-	NA	NA	NA	NA	UBE2H	NA	chr7:129470572-129482418	inner
CUST_4442_PI429285431	3.8468494	P	4.4807434	P	0.64443466243845	0	lncRNA	4392-1_{1..1024}	"transcript_id ""ENST00000428029.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428029.2"" | genecode_v17"	chr12	122233546	122234569	-	ENSG00000212694.4	ENST00000428029.2	AC084018.1	AC084018.1-002	SETD1B	NA	chr12:122242638-122250839	inter
LNCA_21_P0013595	1.7544155	A	0.91949105	A	1.78376362556382	0	lncRNA	XR_108971	XR_108971	XR_108971	NA	Hs.614612	LOC100506912	uncharacterized LOC100506912	ENST00000447524	THC2693068	NA	"PREDICTED: Homo sapiens hypothetical LOC100506912 (LOC100506912), miscRNA [XR_108971]"	chr9:90481056-90481115	hs|9q22.1	Agilent_HUMAN_G3V2	XR_108971	XR_108971	chr9	 90481056	 90481115	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35614_PI429285431	11.8336935	P	11.123139	P	1.63643295945063	0	lncRNA	37027-1_{1..1287}	n342752|CR599987|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5255|NULL|-1.4173700|-0.4026529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342752|CR599987|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5255|NULL|-1.4173700|-0.4026529	chr11	 10529433	 10530719	-	NA	NA	NA	NA	AMPD3	NA	chr11:10519433-10529126	inter
CUST_49637_PI429285431	1.3124528	A	0.91468805	A	1.31746510457117	0	lncRNA	53420-2_{3001..4550}	hg19_lincRNAsTranscripts_TCONS_l2_00025727 range=chr7:26438161-26580560 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025727 range=chr7:26438161-26580560 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 26441161	 26442710	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1544_PI429285431	7.3551183	P	7.5343304	P	0.88318519912464	0	lncRNA	1531-1_{1..560}	"transcript_id ""ENST00000464514.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000464514.1"" | genecode_v17"	chr3	167582637	167583196	+	ENSG00000244214.1	ENST00000464514.1	RP11-298O21.7	RP11-298O21.7-001	NA	NA	NA	inter
CUST_49725_PI429285431	0.9165398	A	0.92024326	A	0.997436249179663	0	lncRNA	53499-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026455 range=chr7:29638359-29727696 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026455 range=chr7:29638359-29727696 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 29638359	 29641358	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_DPY19L2:range=chr12:63954292-640621735'pad=0,hg19_refFlat_DPY19L2:range=chr12:63954292-640621735'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
CUST_10029_PI429285431	0.9070947	A	0.9398365	A	0.977560705383826	0	lncRNA	11555-1_{1..436}	lnc-ARHGAP25-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGAP25-1:1	chr2	 69064514	 69064949	+	lnc-ARHGAP25-1	lnc-ARHGAP25-1:1	XLOC_001517	linc-GKN1	NA	NA	NA	inter
CUST_50612_PI429285431	1.1963167	A	1.2874026	A	0.938815847295088	0	lncRNA	54297-1_{1..740}	hg19_lincRNAsTranscripts_TCONS_l2_00002838 range=chr10:986521-988734 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002838 range=chr10:986521-988734 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	   986521	   987260	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51133_PI429285431	2.8058283	A	2.7757623	A	1.02105883574626	0	lncRNA	54763-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008040 range=chr14:42052848-42075914 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008040 range=chr14:42052848-42075914 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr14	 42052848	 42055847	-	NA	NA	NA	NA	LRFN5	NA	chr14:42076764-42085914	inter
LNCA_21_P0013800	1.2440158	A	1.6709368	A	0.743847612176193	0	lncRNA	TCONS_l2_00030397	NA	NA	NA	NA	XLOC_l2_015641	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015641), lincRNA [TCONS_l2_00030397]"	chrX:149184165-149184224	hs|Xq28	Agilent_HUMAN_G3V2	TCONS_l2_00030397	TCONS_l2_00030397	chrX	149184165	149184224	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24897_PI429285431	2.49902	A	2.5494614	A	0.965640840920813	0	lncRNA	26438-1_{1..2825}	lnc-FBXW11-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-FBXW11-3:1	chr5	170732985	170735809	-	lnc-FBXW11-3	lnc-FBXW11-3:1	ENSG00000255373.1	RP11-546B8.6	RANBP17	NA	chr5:170722985-170727019	inter
CUST_21536_PI429285431	0.903249	A	0.9474933	A	0.969797674917021	0	lncRNA	23154-1_{1..651}	lnc-RP11-10A14.4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-10A14.4.1-1:1	chr8	  9002761	  9003411	+	lnc-RP11-10A14.4.1-1	lnc-RP11-10A14.4.1-1:1	ENSG00000254340.1	RP11-10A14.3	PPP1R3B	"hg19_refFlat_PPP1R3B:range=chr8:8998304-89991615'pad=0,hg19_refFlat_PPP1R3B:range=chr8:8998304-89991615'pad=0 3'pad=0 strand=- repeatMasking=none,-94.50chr8:8993764-9009152"	NA	inner
CUST_47057_PI429285431	11.513041	P	11.714455	P	0.869697745880645	0	lncRNA	51144-1_{1..1257}	"gi|333033799|ref|NR_038192.1| Homo sapiens deoxyhypusine synthase (DHPS), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333033799|ref|NR_038192.1| Homo sapiens deoxyhypusine synthase (DHPS), transcript variant 5, non-coding RNA"	Chr19	 12786531	 12787787	-	1725	NR_038192.1	NA	NA	NA	NA	NA	inter
CUST_49978_PI429285431	5.5212255	P	5.737422	P	0.860831932099694	0	lncRNA	53720-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026266 range=chr7:149731355-149738749 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026266 range=chr7:149731355-149738749 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	149731355	149734354	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25298_PI429285431	0.91529757	A	0.9213516	A	0.995812458480479	0	lncRNA	26828-2_{3001..3810}	lnc-FAM174B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM174B-1:3	chr15	 93138809	 93139618	-	lnc-FAM174B-1	lnc-FAM174B-1:3	ENSG00000260337.1	RP11-386M24.6	NA	NA	NA	inter
CUST_14122_PI429285431	1.5462718	A	1.2045851	A	1.26723729508345	0	lncRNA	15772-1_{1..2596}	lnc-WFS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WFS1-1:1	chr4	  6318102	  6320697	+	lnc-WFS1-1	lnc-WFS1-1:1	XLOC_003438	linc-MAN2B2-2	PPP2R2C	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.12;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80chr4:6322305-6329667"	NA	inter
CUST_32924_PI429285431	0.9241898	A	0.9141833	A	1.00696008686154	0	lncRNA	34548-2_{3001..6000}	n339596|BX648266|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2040|NULL|-0.9052230|-0.3271649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339596|BX648266|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2040|NULL|-0.9052230|-0.3271649	chr20	 21131343	 21134342	+	NA	NA	NA	NA	PLK1S1	NA	chr20:21118343-21144889	inner
CUST_36225_PI429285431	1.5884271	A	1.0256615	A	1.47709805450062	0	lncRNA	37476-1_{1..1615}	n344767|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_316|NULL|-1.3101400|-0.2031395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344767|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_316|NULL|-1.3101400|-0.2031395	chr1	 91297427	 91299041	+	NA	NA	NA	NA	ZNF644	"hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0,hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80chr1:91358513-91367295"	NA	inter
CUST_3515_PI429285431	1.2441832	A	1.6461443	A	0.756828802906585	0	lncRNA	3486-1_{1..397}	"transcript_id ""ENST00000415465.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415465.1"" | genecode_v17"	chr9	111463650	111464046	+	ENSG00000231678.1	ENST00000415465.1	RP11-339N8.1	RP11-339N8.1-001	NA	NA	NA	inter
CUST_51560_PI429285431	1.2715982	A	0.91626847	A	1.27927792865492	0	lncRNA	55124-2_{3001..3759}	hg19_lincRNAsTranscripts_TCONS_l2_00011627 range=chr17:18417386-18424566 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011627 range=chr17:18417386-18424566 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 18420386	 18421144	-	NA	NA	NA	NA	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.82;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50"	NA	inter
CUST_31335_PI429285431	3.5911577	P	3.6969383	P	0.929301988491229	0	lncRNA	33117-1_{1..472}	n337801|AX721149|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|183|NULL|-1.0066300|-0.2020006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337801|AX721149|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|183|NULL|-1.0066300|-0.2020006	chrX	102692411	102692882	-	NA	NA	NA	NA	RAB40A	NA	chrX:102754681-102774417	inner
CUST_30613_PI429285431	1.3700769	A	0.8940538	A	1.39090424227297	0	lncRNA	32395-1_{1..228}	n335936|X71137|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323153|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323153|1.9592400|-0.0159406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335936|X71137|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323153|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323153|1.9592400|-0.0159406	chrX	139586571	139586798	-	NA	NA	NA	NA	SOX3	NA	chrX:139585152-139587225	inner
CUST_1335_PI429285431	4.4860506	P	4.4527607	P	1.02334308308079	0	lncRNA	1324-1_{1..787}	"transcript_id ""ENST00000424786.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424786.1"" | genecode_v17"	chr3	 34200826	 34201612	+	ENSG00000226320.1	ENST00000424786.1	AC018359.1	AC018359.1-001	NA	NA	NA	inter
CUST_39210_PI429285431	12.363442	P	12.556968	P	0.874465880525122	0	lncRNA	40185-1_{1..1270}	n386001|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009ycs.1||1.7899800|-0.1110715	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386001|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009ycs.1||1.7899800|-0.1110715	chr11	  1220624	  1221893	+	NA	NA	NA	NA	MUC5AC	NA	chr11:1210624-1222364	inter
CUST_23077_PI429285431	2.9681845	P	3.4235206	P	0.729340240288517	0	lncRNA	24648-1_{1..392}	lnc-IFITM3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-IFITM3-1:1	chr11	   311035	   311426	-	lnc-IFITM3-1	lnc-IFITM3-1:1	ENSG00000254910.1	RP11-326C3.7	IFITM1	NA	chr11:313991-315272	inter
CUST_46962_PI429285431	6.855625	P	5.394506	P	2.75321829168969	0	lncRNA	51067-1_{1..3000}	"gi|154759243|ref|NR_003682.1| Homo sapiens C-terminal binding protein 2 pseudogene (MGC70870), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|154759243|ref|NR_003682.1| Homo sapiens C-terminal binding protein 2 pseudogene (MGC70870), non-coding RNA"	NT_113930.1	   116623	   119622	+	403340	NR_003682.1	NA	NA	NA	NA	NA	Unknown
CUST_33937_PI429285431	7.4587483	P	7.612851	P	0.898691149912112	0	lncRNA	35478-1_{1..3000}	n340736|AK095573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3199|NULL|-0.8604430|-0.2462343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340736|AK095573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3199|NULL|-0.8604430|-0.2462343	chr17	 47129176	 47132175	+	NA	NA	NA	NA	IGF2BP1	NA	chr17:47119176-47133507	inner
CUST_3076_PI429285431	1.4302403	A	2.5355225	A	0.46481154242473	0	lncRNA	3055-1_{1..169}	"transcript_id ""ENST00000517897.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517897.1"" | genecode_v17"	chr8	 37337607	 37337775	+	ENSG00000253388.1	ENST00000517897.1	RP11-150O12.2	RP11-150O12.2-001	NA	NA	NA	inter
CUST_27456_PI429285431	0.9085834	A	0.917285	A	0.993986663411757	0	lncRNA	29026-1_{1..613}	n324632|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280612|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280612|-1.0983000|-0.4180536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324632|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280612|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280612|-1.0983000|-0.4180536	chr5	 70707368	 70707980	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7507_PI429285431	1.0459917	A	1.3072782	A	0.834343575192534	0	lncRNA	9148-1_{1..2527}	lnc-C1orf227-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-C1orf227-1:5	chr1	213031108	213033634	-	lnc-C1orf227-1	lnc-C1orf227-1:5	ENSG00000198468	NCRNA00292	FLVCR1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70chr1:213031597-213041430"	NA	inter
CUST_3680_PI429285431	1.0897845	A	0.9007692	A	1.13998536234724	0	lncRNA	3648-1_{1..559}	"transcript_id ""ENST00000451376.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451376.1"" | genecode_v17"	chr10	 46088878	 46089436	-	ENSG00000242639.2	ENST00000451376.1	RP11-358L16.2	RP11-358L16.2-001	8-Mar	NA	chr10:46078878-46090354	inner
CUST_9474_PI429285431	2.2713661	A	3.252043	P	0.506741925192994	0	lncRNA	10980-1_{1..1086}	lnc-ZBED5-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZBED5-1:4	chr11	 10917978	 10919063	-	lnc-ZBED5-1	lnc-ZBED5-1:4	XLOC_009372	linc-ZBED5-2	NA	NA	NA	inter
CUST_17893_PI429285431	0.9021746	A	0.90798616	A	0.995979836153118	0	lncRNA	19626-1_{1..349}	lnc-DCAF5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCAF5-2:2	chr14	 69725719	 69726067	-	lnc-DCAF5-2	lnc-DCAF5-2:2	XLOC_011060	linc-DCAF5	GALNTL1	NA	chr14:69726681-69735784	inter
LNCA_21_P0009141	3.675952	P	3.628206	P	1.03364873666736	0	lncRNA	TCONS_00025086	NA	NA	NA	NA	XLOC_012044	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012044), lincRNA [TCONS_00025086]"	chr16:86309370-86309311	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00025086	TCONS_00025086	chr16	 86309311	 86309370	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6304_PI429285431	9.484831	P	9.482252	P	1.00178922533557	0	lncRNA	6228-1_{1..478}	"transcript_id ""ENST00000591414.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591414.1"" | genecode_v17"	chr19	  4457959	  4458436	-	ENSG00000267011.1	ENST00000591414.1	CTB-50L17.16	CTB-50L17.16-001	UBXN6	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80chr19:4447959-4457791"	NA	inter
LNCA_21_P0013401	0.9070725	A	0.90148634	A	1.00387953705109	0	lncRNA	ENST00000440208	NA	NA	NA	NA	XLOC_l2_013554	NA	ENST00000440208	THC2788696	NA	"BROAD Institute lincRNA (XLOC_l2_013554), lincRNA [TCONS_l2_00027191]"	chr7:108254631-108254690	hs|7q31.1	Agilent_HUMAN_G3V2	ENST00000440208	ENST00000440208	chr7	108254631	108254690	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25778_PI429285431	4.4961143	P	2.8003762	A	3.23942577119106	0	lncRNA	27303-1_{1..3000}	lnc-BHMT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BHMT2-1:1	chr5	 77771327	 77774326	+	lnc-BHMT2-1	lnc-BHMT2-1:1	ENSG00000085365.12	SCAMP1	LHFPL2	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10chr5:77781038-77786562"	NA	inner
CUST_141_PI429285431	7.9943056	P	7.7776084	P	1.16207018086003	0	lncRNA	132-1_{1..664}	"transcript_id ""ENST00000321336.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000321336.1"" | genecode_v17"	chr1	  2980636	  2981299	-	ENSG00000177133.5	ENST00000321336.1	RP1-163G9.1	RP1-163G9.1-004	PRDM16	NA	chr1:2985742-2994333	inter
LNCA_21_P0012381	5.6559696	P	5.5081	P	1.10793220134441	0	lncRNA	TCONS_l2_00018697	NA	NA	NA	NA	XLOC_l2_009790	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009790), lincRNA [TCONS_l2_00018697]"	chr3:94656655-94656714	hs|3q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00018697	TCONS_l2_00018697	chr3	 94656655	 94656714	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22552_PI429285431	2.5004385	A	2.6016448	A	0.932253168185508	0	lncRNA	24139-1_{1..678}	lnc-PRMT8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRMT8-2:1	chr12	  4019050	  4019727	+	lnc-PRMT8-2	lnc-PRMT8-2:1	ENSG00000256862.1	RP11-664D1.1	NA	NA	NA	inter
CUST_3778_PI429285431	6.5523195	P	6.3034897	P	1.18824291543378	0	lncRNA	3746-1_{1..723}	"transcript_id ""ENST00000416612.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416612.1"" | genecode_v17"	chr10	104221170	104221892	+	ENSG00000243628.2	ENST00000416612.1	RP11-18I14.7	RP11-18I14.7-001	ACTR1A	NA	chr10:104238986-104240674	inner
CUST_44970_PI429285431	9.169682	P	8.684088	P	1.40016223492519	0	lncRNA	49481-1_{1..1612}	"gi|197313649|ref|NR_024111.1| Homo sapiens Shwachman-Bodian-Diamond syndrome pseudogene 1 (SBDSP1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|197313649|ref|NR_024111.1| Homo sapiens Shwachman-Bodian-Diamond syndrome pseudogene 1 (SBDSP1), transcript variant 2, non-coding RNA"	Chr7	 72299952	 72301563	+	155370	NR_024111.1	NA	NA	NA	NA	NA	inter
CUST_41770_PI429285431	11.199461	P	11.446872	P	0.842406807523278	0	lncRNA	43333-1_{1..94}	ENST00000584300 ncrna:miRNA chromosome:GRCh37:1:228129291:228129384:-1 gene:ENSG00000264483 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584300 ncrna:miRNA chromosome:GRCh37:1:228129291:228129384:-1 gene:ENSG00000264483 gene_biotype:miRNA transcript_biotype:miRNA	chr1	228129291	228129384	-	ENSG00000264483	ENST00000584300	NA	NA	WNT9A	NA	chr1:228119291-228135676	inner
CUST_45474_PI429285431	3.5431597	A	3.3302693	P	1.15900789996872	0	lncRNA	49889-1_{1..3000}	"gi|310124555|ref|XR_110101.1| PREDICTED: Homo sapiens uncharacterized LOC100133077 (LOC100133077), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124555|ref|XR_110101.1| PREDICTED: Homo sapiens uncharacterized LOC100133077 (LOC100133077), misc_RNA"	Chr9	140762377	140765376	-	100133077	XR_110101.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CACNA1B:range=chr9:140772386-1410163325'pad=0,hg19_refFlat_CACNA1B:range=chr9:140772386-1410163325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CACNA1B:range=chr9:140772386-1410164515'pad=0,hg19_refFlat_CACNA1B:range=chr9:140772386-1410164515'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60"	NA	inter
CUST_22196_PI429285431	10.627525	P	10.559825	P	1.04804451812538	0	lncRNA	23796-1_{1..195}	lnc-STX8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STX8-2:1	chr17	  9550821	  9551015	-	lnc-STX8-2	lnc-STX8-2:1	ENSG00000262296.1	RP11-55L4.1	USP43	NA	chr17:9540821-9560977	inner
CUST_39777_PI429285431	6.4721303	P	6.1858416	P	1.219499105567	0	lncRNA	40692-1_{1..2972}	n405985|NR_003268|lncRNA|Homosapiens||RefGeneNoncode|NR_003268||14.4007000|-0.3678221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405985|NR_003268|lncRNA|Homosapiens||RefGeneNoncode|NR_003268||14.4007000|-0.3678221	chr13	 50464544	 50467515	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27058_PI429285431	1.1132469	A	0.8934285	A	1.1645869842403	0	lncRNA	28592-1_{1..612}	n324169|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055437|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055437|-1.1031800|-0.4498925	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324169|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055437|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055437|-1.1031800|-0.4498925	chr9	    90803	    91414	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48520_PI429285431	4.4784117	P	4.7285986	P	0.840787484845146	0	lncRNA	52372-2_{3001..3419}	hg19_lincRNAsTranscripts_TCONS_l2_00014406 range=chr2:7199703-7217995 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014406 range=chr2:7199703-7217995 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	  7202703	  7203121	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010176	0.9015006	A	0.8940573	A	1.00517263452802	0	lncRNA	ENST00000444868	NA	NA	NA	NA	XLOC_014008	NA	ENST00000444868	NA	NA	"BROAD Institute lincRNA (XLOC_014008), lincRNA [TCONS_00028872]"	chr21:18126962-18126903	hs|21q21.1	Agilent_HUMAN_G3V2	ENST00000444868	ENST00000444868	chr21	 18126903	 18126962	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28660_PI429285431	1.4153652	A	0.8975946	A	1.43174106486986	0	lncRNA	30352-1_{1..880}	n326039|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047273|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047273|0.2809040|-0.3039475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326039|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047273|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047273|0.2809040|-0.3039475	chr10	 26977034	 26977913	+	NA	NA	NA	NA	PDSS1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr10:26986595-26992389"	NA	inter
LNCA_21_P0007406	1.2419606	A	2.392623	A	0.450418378415623	0	lncRNA	TCONS_00019772	NA	NA	NA	NA	XLOC_009564	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009564), lincRNA [TCONS_00019772]"	chr11:115943811-115943752	hs|11q23.3	Agilent_HUMAN_G3V2	TCONS_00019772	TCONS_00019772	chr11	115943752	115943811	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25044_PI429285431	6.9555807	P	7.226281	P	0.828917082696724	0	lncRNA	26583-1_{1..701}	lnc-NFYB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NFYB-1:1	chr12	104674062	104674762	-	lnc-NFYB-1	lnc-NFYB-1:1	ENSG00000257732.1	RP11-818F20.5	TXNRD1	NA	chr12:104664062-104684500	inner
CUST_16217_PI429285431	0.8903597	A	0.8845806	A	1.00401380067889	0	lncRNA	17923-1_{1..218}	lnc-TXNDC16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TXNDC16-1:1	chr14	 52889507	 52889724	-	lnc-TXNDC16-1	lnc-TXNDC16-1:1	XLOC_011025	linc-NID2-4	TXNDC16	NA	chr14:52897308-52899572	inter
LNCA_21_P0003041	4.2690926	P	4.463025	P	0.874219582538594	0	lncRNA	TCONS_00006267	NA	NA	NA	NA	XLOC_002870	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002870), lincRNA [TCONS_00006267]"	chr3:149757627-149758444	hs|3q25.1	Agilent_HUMAN_G3V2	TCONS_00006267	TCONS_00006267	chr3	149757627	149758444	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2474_PI429285431	0.89125067	A	0.8932514	A	0.99861416080469	0	lncRNA	2466-1_{1..933}	"transcript_id ""ENST00000422310.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422310.2"" | genecode_v17"	chr6	  6901255	  6902187	-	ENSG00000223342.2	ENST00000422310.2	RP3-429O6.1	RP3-429O6.1-001	NA	NA	NA	inter
CUST_24188_PI429285431	0.90352225	A	0.90442616	A	0.999373653568892	0	lncRNA	25739-1_{1..390}	lnc-KIF3A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIF3A-1:3	chr5	131991411	131991800	-	lnc-KIF3A-1	lnc-KIF3A-1:3	ENSG00000223442.1	AC004041.2	IL13	"hg19_refFlat_RAD50:range=chr5:131893017-1319780565'pad=0,hg19_refFlat_RAD50:range=chr5:131893017-1319780565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60chr5:131993865-131996801"	NA	inter
CUST_12979_PI429285431	0.9118469	A	0.9150668	A	0.997770624151258	0	lncRNA	14605-1_{1..421}	lnc-ELF2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELF2-2:3	chr4	139858978	139859398	-	lnc-ELF2-2	lnc-ELF2-2:3	XLOC_004096	linc-SLC7A11-4	NA	NA	NA	inter
CUST_36967_PI429285431	0.8889675	A	0.88724214	A	1.00119664382701	0	lncRNA	38113-1_{1..669}	n345429|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_978|NULL|-1.3257800|-0.3132740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345429|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_978|NULL|-1.3257800|-0.3132740	chr1	 24632417	 24633085	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9151_PI429285431	0.89751303	A	1.3777134	A	0.716878052839591	0	lncRNA	10670-1_{1..1325}	lnc-CDC27-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDC27-1:1	chr17	 45281305	 45282629	-	lnc-CDC27-1	lnc-CDC27-1:1	ENSG00000249029	ENST00000504741	MYL4	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40chr17:45286428-45291324"	NA	inter
CUST_16129_PI429285431	2.5376515	A	2.2962072	A	1.18217555992169	0	lncRNA	17835-1_{1..232}	lnc-C9orf170-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf170-2:1	chr9	 89369885	 89370116	+	lnc-C9orf170-2	lnc-C9orf170-2:1	XLOC_007437	linc-C9orf170-2	NA	NA	NA	inter
CUST_32048_PI429285431	3.080098	A	3.0933998	P	0.990822269669783	0	lncRNA	33762-1_{1..1003}	n338609|BC067452|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1015|NULL|3.3702600|-0.0615317	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338609|BC067452|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1015|NULL|3.3702600|-0.0615317	chr13	 27332961	 27333963	-	NA	NA	NA	NA	GPR12	NA	chr13:27329337-27334922	inner
CUST_28058_PI429285431	1.4172575	A	0.8823017	A	1.4488977638414	0	lncRNA	29676-1_{1..569}	n325324|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326021|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326021|-1.2052900|-0.4351895	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325324|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326021|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326021|-1.2052900|-0.4351895	chr2	 43121835	 43122403	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15039_PI429285431	0.8903466	A	0.88862056	A	1.00119711573123	0	lncRNA	16702-1_{1..262}	lnc-SPRY1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPRY1-3:1	chr4	124949222	124949483	+	lnc-SPRY1-3	lnc-SPRY1-3:1	XLOC_003682	linc-FAT4-1	NA	NA	NA	inter
CUST_11468_PI429285431	2.89319	A	3.2734172	P	0.768316584285099	0	lncRNA	13034-1_{1..467}	lnc-APITD1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APITD1-1:2	chr1	 10519147	 10519613	+	lnc-APITD1-1	lnc-APITD1-1:2	XLOC_000048	linc-PEX14	APITD1-CORT	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50chr1:10509147-10512060"	NA	inter
CUST_24649_PI429285431	1.1085669	A	0.9104271	A	1.14721818654915	0	lncRNA	26198-1_{1..297}	lnc-TAF9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TAF9-1:1	chr5	 68798201	 68798497	-	lnc-TAF9-1	lnc-TAF9-1:1	ENSG00000249295.1	RP11-241G9.3	OCLN	NA	chr5:68788201-68808293	inner
CUST_41517_PI429285431	4.910081	P	5.2125235	P	0.810878406730145	0	lncRNA	42751-1_{1..94}	ENST00000583920 ncrna:miRNA chromosome:GRCh37:15:28671637:28671730:1 gene:ENSG00000266039 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583920 ncrna:miRNA chromosome:GRCh37:15:28671637:28671730:1 gene:ENSG00000266039 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 28671637	 28671730	+	ENSG00000266039	ENST00000583920	NA	NA	NA	NA	NA	inter
CUST_11777_PI429285431	1.0688865	A	0.89792985	A	1.12580475752567	0	lncRNA	13356-1_{1..853}	lnc-ADCY2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADCY2-1:3	chr5	  7387393	  7388245	+	lnc-ADCY2-1	lnc-ADCY2-1:3	XLOC_004280	linc-ADCY2-1	ADCY2	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90chr5:7396343-7397693"	NA	inter
LNCA_21_P0012241	5.970937	P	5.12882	P	1.79267877630183	0	lncRNA	TCONS_l2_00017559	NA	NA	NA	NA	XLOC_l2_009281	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009281), lincRNA [TCONS_l2_00017559]"	chr22:17131003-17133257	hs|22q11.1	Agilent_HUMAN_G3V2	TCONS_l2_00017559	TCONS_l2_00017559	chr22	 17131003	 17133257	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3263_PI429285431	1.4426756	A	2.2175355	A	0.584445376968754	0	lncRNA	3241-1_{1..773}	"transcript_id ""ENST00000522896.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522896.1"" | genecode_v17"	chr8	111346972	111347744	-	ENSG00000253956.1	ENST00000522896.1	RP11-211F2.1	RP11-211F2.1-001	NA	NA	NA	inter
CUST_21363_PI429285431	3.8503325	P	3.1477888	P	1.62737157867505	0	lncRNA	22986-1_{1..589}	lnc-AC016251.1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC016251.1-1:10	chr15	 96826061	 96826649	-	lnc-AC016251.1-1	lnc-AC016251.1-1:10	ENSG00000247809.3	RP11-327J17.3	NA	NA	NA	inter
CUST_10132_PI429285431	2.0029955	A	1.1446234	A	1.81299142310455	0	lncRNA	11655-1_{1..853}	lnc-DARS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-DARS2-1:1	chr1	173832364	173833216	+	lnc-DARS2-1	lnc-DARS2-1:1	XLOC_000467	linc-ZBTB37	DARS2	NA	chr1:173822364-173827682	inter
CUST_38888_PI429285431	5.211541	P	3.1533055	P	4.16476617569427	0	lncRNA	39874-2_{3001..3669}	n384826|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003nbc.1||0.0213217|-0.3118503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384826|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003nbc.1||0.0213217|-0.3118503	chr6	 13789976	 13790644	-	NA	NA	NA	NA	CCDC90A	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-60.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10chr6:13786781-13800645"	NA	inner
CUST_41260_PI429285431	6.3913374	P	5.4390073	P	1.93499535077262	0	lncRNA	42222-1_{1..82}	ENST00000581326 ncrna:miRNA chromosome:GRCh37:17:58119722:58119803:-1 gene:ENSG00000263422 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581326 ncrna:miRNA chromosome:GRCh37:17:58119722:58119803:-1 gene:ENSG00000263422 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 58119722	 58119803	-	ENSG00000263422	ENST00000581326	NA	NA	HEATR6	NA	chr17:58120552-58129803	inter
CUST_32345_PI429285431	1.1224456	A	2.2326062	A	0.463242460184871	0	lncRNA	34025-1_{1..452}	n338925|AF075101|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1351|NULL|-1.1261100|-0.4017263	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338925|AF075101|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1351|NULL|-1.1261100|-0.4017263	chr2	102326698	102327149	-	NA	NA	NA	NA	MAP4K4	NA	chr2:102316698-102337123	inner
CUST_31514_PI429285431	0.89619094	A	0.92201835	A	0.982257095918387	0	lncRNA	33275-1_{1..2123}	n338002|CR611171|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|389|NULL|0.1599510|-0.2749928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338002|CR611171|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|389|NULL|0.1599510|-0.2749928	chr22	 27188218	 27190340	+	NA	NA	NA	NA	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90"	NA	inter
CUST_32587_PI429285431	4.889313	P	5.14807	P	0.835807726144308	0	lncRNA	34250-1_{1..3000}	n339208|AK023784|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1640|NULL|-0.7793830|-0.2186507	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339208|AK023784|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1640|NULL|-0.7793830|-0.2186507	chr16	 50671503	 50674502	+	NA	NA	NA	NA	NKD1	NA	chr16:50661503-50674771	inner
CUST_4108_PI429285431	4.2247286	P	4.9089313	P	0.622349670838331	0	lncRNA	4069-1_{1..698}	"transcript_id ""ENST00000524467.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524467.1"" | genecode_v17"	chr11	125810391	125811088	-	ENSG00000254790.1	ENST00000524467.1	RP11-680F20.4	RP11-680F20.4-001	LOC338667	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20chr11:125817319-125821088"	NA	inter
CUST_9998_PI429285431	1.136211	A	1.637452	A	0.706498792540609	0	lncRNA	11524-1_{1..364}	lnc-SLC6A9-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC6A9-3:1	chr1	 44405902	 44406265	-	lnc-SLC6A9-3	lnc-SLC6A9-3:1	XLOC_000811	linc-HYI-1	IPO13	NA	chr1:44412478-44416129	inter
CUST_7691_PI429285431	6.342193	P	6.4744477	P	0.912404394266848	0	lncRNA	9324-1_{1..2299}	lnc-TTC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTC4-1:1	chr1	 55230145	 55232443	+	lnc-TTC4-1	lnc-TTC4-1:1	ENSG00000245726	ENST00000500294	PARS2	"hg19_refFlat_PARS2:range=chr1:55223407-552248345'pad=0,hg19_refFlat_PARS2:range=chr1:55223407-552248345'pad=0 3'pad=0 strand=- repeatMasking=none,-100.10chr1:55222571-55230226"	NA	inner
CUST_18181_PI429285431	4.088201	P	4.1833224	P	0.936193465248742	0	lncRNA	19917-1_{1..487}	lnc-MSN-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MSN-1:2	chrX	 64820542	 64821028	+	lnc-MSN-1	lnc-MSN-1:2	ENSG00000231669	RP11-368D24__A.1	NA	NA	NA	inter
CUST_4948_PI429285431	1.206447	A	1.0582179	A	1.10820831739451	0	lncRNA	4892-1_{1..428}	"transcript_id ""ENST00000556546.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556546.1"" | genecode_v17"	chr14	 88603077	 88603504	-	ENSG00000258975.1	ENST00000556546.1	RP11-753D20.1	RP11-753D20.1-001	NA	NA	NA	inter
LNCA_21_P0004105	1.4304521	A	1.695652	A	0.832083433142103	0	lncRNA	ENST00000511443	NA	BC002741	NA	Hs.453273	XLOC_004740	NA	ENST00000511443	NA	NA	"BROAD Institute lincRNA (XLOC_004740), lincRNA [TCONS_00009609]"	chr5:15192318-15192259	hs|5p15.1	Agilent_HUMAN_G3V2	ENST00000511443	ENST00000511443	chr5	 15192259	 15192318	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40464_PI429285431	3.3753257	P	2.4199002	A	1.93915147148189	0	lncRNA	41235-1_{1..3000}	n409391|NR_033781|lncRNA|Homosapiens||RefGeneNoncode|NR_033781||3.8519800|-0.2446254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409391|NR_033781|lncRNA|Homosapiens||RefGeneNoncode|NR_033781||3.8519800|-0.2446254	chr1	120106502	120109501	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44181_PI429285431	3.8110306	P	3.752523	P	1.04138793673665	0	lncRNA	48837-1_{1..3000}	"gi|388240818|ref|NR_049755.1| Homo sapiens ribonuclease P/MRP 14kDa subunit (RPP14), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388240818|ref|NR_049755.1| Homo sapiens ribonuclease P/MRP 14kDa subunit (RPP14), transcript variant 3, non-coding RNA"	Chr3	 58291972	 58294971	+	11102	NR_049755.1	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50"	NA	inter
CUST_1481_PI429285431	2.2941647	A	1.5566318	A	1.6673221729381	0	lncRNA	1468-1_{1..569}	"transcript_id ""ENST00000494509.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000494509.1"" | genecode_v17"	chr3	145679542	145680110	+	ENSG00000240095.1	ENST00000494509.1	RP11-88H10.3	RP11-88H10.3-001	NA	NA	NA	inter
LNCA_21_P0006158	0.90554345	A	2.26499	A	0.389731770957387	0	lncRNA	TCONS_00016020	NA	NA	NA	NA	XLOC_007415	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007415), lincRNA [TCONS_00016020]"	chr9:79168112-79179316	hs|9q21.13	Agilent_HUMAN_G3V2	TCONS_00016020	TCONS_00016020	chr9	 79168112	 79179316	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10742_PI429285431	5.953417	P	5.8505754	P	1.07388655829501	0	lncRNA	12278-1_{1..707}	lnc-FAM150B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM150B-1:1	chr2	   293348	   294054	-	lnc-FAM150B-1	lnc-FAM150B-1:1	XLOC_001926	linc-FAM150B-3	FAM150B	NA	chr2:283348-288308	inter
LNCA_21_P0007634	0.91497874	A	0.9241898	A	0.993635718111722	0	lncRNA	TCONS_00020578	NA	NA	NA	NA	XLOC_009894	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009894), lincRNA [TCONS_00020578]"	chr12:116207869-116207928	hs|12q24.21	Agilent_HUMAN_G3V2	TCONS_00020578	TCONS_00020578	chr12	116207869	116207928	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29018_PI429285431	1.251158	A	1.2405484	A	1.00738112149833	0	lncRNA	30744-1_{1..260}	n326504|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029907|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029907|-1.3475400|-0.4364568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326504|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029907|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029907|-1.3475400|-0.4364568	chr1	101561480	101561739	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009726	3.901679	P	4.2095203	P	0.807849638167612	0	lncRNA	TCONS_00027064	NA	NA	NA	NA	XLOC_013103	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013103), lincRNA [TCONS_00027064]"	chr19:47929364-47929423	hs|19q13.32	Agilent_HUMAN_G3V2	TCONS_00027064	TCONS_00027064	chr19	 47929364	 47929423	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37416_PI429285431	1.8096683	A	0.92456686	A	1.84689447730781	0	lncRNA	38522-1_{1..819}	n345871|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1420|NULL|-1.2996200|-0.1645124	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n345871|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1420|NULL|-1.2996200|-0.1645124	chr6	 44184631	 44185449	+	NA	NA	NA	NA	SLC29A1	NA	chr6:44187242-44195931	inter
CUST_46081_PI429285431	1.0970292	A	1.043644	A	1.03769696497531	0	lncRNA	50352-1_{1..766}	"gi|397139448|ref|XR_110367.3| PREDICTED: Homo sapiens uncharacterized LOC100506869, transcript variant 1 (LOC100506869), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139448|ref|XR_110367.3| PREDICTED: Homo sapiens uncharacterized LOC100506869, transcript variant 1 (LOC100506869), misc_RNA"	NA	NA	NA	NA	NA	XR_110367.3	NA	NA	NA	NA	NA	Unknown
CUST_8896_PI429285431	3.5346446	P	3.3881712	P	1.10686049414627	0	lncRNA	10431-1_{1..3000}	lnc-ADD1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ADD1-1:3	chr4	  2942029	  2945028	+	lnc-ADD1-1	lnc-ADD1-1:3	ENSG00000249673	RP11-520M5.5	NOP14	"hg19_refFlat_NOP14:range=chr4:2940558-29650465'pad=0,hg19_refFlat_NOP14:range=chr4:2940558-29650465'pad=0 3'pad=0 strand=- repeatMasking=none,-99.20chr4:2939663-2953596"	NA	inner
CUST_8095_PI429285431	0.9039279	A	0.90007675	A	1.00267297982172	0	lncRNA	9700-1_{1..2550}	lnc-C9orf37-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C9orf37-1:1	chr9	140505804	140508353	-	lnc-C9orf37-1	lnc-C9orf37-1:1	ENSG00000244951	AL365502.1	ARRDC1	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.11;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40chr9:140500096-140509812"	NA	inner
LNCA_21_P0009923	5.439851	P	5.8816824	P	0.736199461723417	0	lncRNA	ENST00000427132	NA	NA	NA	NA	XLOC_013836	NA	ENST00000427132	NA	NA	"BROAD Institute lincRNA (XLOC_013836), lincRNA [TCONS_00028083]"	chr20:61265480-61265307	hs|20q13.33	Agilent_HUMAN_G3V2	ENST00000427132	ENST00000427132	chr20	 61265307	 61265480	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50467_PI429285431	2.4996953	A	2.7561965	A	0.83711561852804	0	lncRNA	54170-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030536 range=chrX:73492776-73504672 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030536 range=chrX:73492776-73504672 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 73492776	 73495775	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_14261_PI429285431	8.627251	P	8.001444	P	1.54307373284958	0	lncRNA	15918-1_{1..259}	lnc-ELF2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELF2-2:2	chr4	139933749	139934007	-	lnc-ELF2-2	lnc-ELF2-2:2	XLOC_004096	linc-SLC7A11-4	CCRN4L	NA	chr4:139936943-139943758	inter
CUST_2102_PI429285431	0.8977915	A	0.8961207	A	1.00115878117798	0	lncRNA	2093-1_{1..660}	"transcript_id ""ENST00000504827.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504827.1"" | genecode_v17"	chr5	 18965970	 18966629	-	ENSG00000249174.1	ENST00000504827.1	RP11-124N3.3	RP11-124N3.3-001	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00"	NA	inter
CUST_41656_PI429285431	0.9034673	A	0.90628123	A	0.998051433280127	0	lncRNA	43072-1_{1..96}	ENST00000385188 ncrna:miRNA chromosome:GRCh37:2:47604814:47604909:1 gene:ENSG00000207923 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385188 ncrna:miRNA chromosome:GRCh37:2:47604814:47604909:1 gene:ENSG00000207923 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 47604814	 47604909	+	ENSG00000207923	ENST00000385188	NA	NA	EPCAM	NA	chr2:47596287-47614167	inner
CUST_26213_PI429285431	4.3397093	P	5.044846	P	0.613384365729785	0	lncRNA	27722-1_{1..1366}	lnc-SYNDIG1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SYNDIG1L-1:1	chr14	 74760028	 74761393	-	lnc-SYNDIG1L-1	lnc-SYNDIG1L-1:1	ENSG00000258559.1	AC005519.4	ABCD4	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-18.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40chr14:74751980-74769767"	NA	inter
CUST_14325_PI429285431	0.91814196	A	0.9182285	A	0.999940016842056	0	lncRNA	15983-1_{1..819}	lnc-TIMM21-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TIMM21-2:1	chr18	 71624791	 71625609	+	lnc-TIMM21-2	lnc-TIMM21-2:1	XLOC_012716	linc-C18orf55-2	NA	NA	NA	inter
CUST_10598_PI429285431	2.3396592	A	2.5837898	A	0.844324451474791	0	lncRNA	12127-2_{3001..3538}	lnc-RP11-1220K2.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-1220K2.2.1-1:1	chr7	141923364	141923901	+	lnc-RP11-1220K2.2.1-1	lnc-RP11-1220K2.2.1-1:1	XLOC_006277	linc-MTRNR2L6-3	NA	NA	NA	inter
CUST_41096_PI429285431	0.91223574	A	0.9245995	A	0.991466711578073	0	lncRNA	41799-1_{1..88}	ENST00000583110 ncrna:miRNA chromosome:GRCh37:11:71616153:71616240:1 gene:ENSG00000266859 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583110 ncrna:miRNA chromosome:GRCh37:11:71616153:71616240:1 gene:ENSG00000266859 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 71616153	 71616240	+	ENSG00000266859	ENST00000583110	NA	NA	NA	NA	NA	inter
CUST_30735_PI429285431	7.7621036	P	7.710777	P	1.03621731782288	0	lncRNA	32518-1_{1..355}	n336300|Y18213|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326074|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326074|1.7554800|-0.0731155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336300|Y18213|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326074|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326074|1.7554800|-0.0731155	chr16	 56374757	 56375111	+	NA	NA	NA	NA	GNAO1	NA	chr16:56364757-56387888	inner
LNCA_21_P0005599	0.9151209	A	0.91242975	A	1.00186710390687	0	lncRNA	TCONS_00014282	NA	NA	NA	NA	XLOC_006409	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006409), lincRNA [TCONS_00014282]"	chr7:35654514-35654455	hs|7p14.2	Agilent_HUMAN_G3V2	TCONS_00014282	TCONS_00014282	chr7	 35654455	 35654514	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48550_PI429285431	6.3023357	P	6.2930946	P	1.00642600112896	0	lncRNA	52399-1_{1..448}	hg19_lincRNAsTranscripts_TCONS_l2_00013946 range=chr2:122536828-122552355 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013946 range=chr2:122536828-122552355 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	122536828	122537275	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37105_PI429285431	5.394373	P	4.878991	P	1.42937256208357	0	lncRNA	38230-1_{1..864}	n345548|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1097|NULL|-1.3364500|-0.3919713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345548|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1097|NULL|-1.3364500|-0.3919713	chr2	165509887	165510750	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009072	4.031781	P	4.2529335	P	0.857879843494043	0	lncRNA	TCONS_00024742	NA	NA	NA	NA	XLOC_012021	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012021), lincRNA [TCONS_00024742]"	chr16:80862494-80862435	hs|16q23.2	Agilent_HUMAN_G3V2	TCONS_00024742	TCONS_00024742	chr16	 80862435	 80862494	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47704_PI429285431	2.0398457	A	1.2952249	A	1.67553381178214	0	lncRNA	51670-2_{3001..5810}	"gi|385137067|ref|NR_047605.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 35, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137067|ref|NR_047605.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 35, non-coding RNA"	ChrY	 15363259	 15366068	-	7404	NR_047605.1	NA	NA	NA	NA	NA	inter
CUST_6889_PI429285431	5.0780196	P	5.8668942	P	0.578795415586135	0	lncRNA	6839-1_{1..579}	"transcript_id ""ENST00000332440.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000332440.3"" | genecode_v17"	chr21	 44881974	 44882552	-	ENSG00000185186.4	ENST00000332440.3	LINC00313	LINC00313-001	NA	NA	NA	inter
CUST_22865_PI429285431	1.043354	A	0.8964201	A	1.10721385407328	0	lncRNA	24442-2_{3001..3119}	lnc-SRGAP3-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRGAP3-1:11	chr3	  9438634	  9438752	-	lnc-SRGAP3-1	lnc-SRGAP3-1:11	ENSG00000206573.4	RP11-58B17.1	LOC100652926	NA	chr3:9435634-9438752	inter
CUST_15595_PI429285431	5.2622776	P	5.6201973	P	0.780288909626192	0	lncRNA	17282-1_{1..459}	lnc-EXOSC8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXOSC8-1:1	chr13	 38064564	 38065022	+	lnc-EXOSC8-1	lnc-EXOSC8-1:1	XLOC_010348	linc-UFM1-4	NA	NA	NA	inter
LNCA_21_P0003130	0.90756184	A	1.5951931	A	0.620872414943108	0	lncRNA	TCONS_00006544	NA	NA	NA	NA	XLOC_003164	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003164), lincRNA [TCONS_00006544]"	chr3:75691224-75691165	hs|3p12.3	Agilent_HUMAN_G3V2	TCONS_00006544	TCONS_00006544	chr3	 75691165	 75691224	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12767_PI429285431	1.1162682	A	1.809382	A	0.618517448670702	0	lncRNA	14390-1_{1..372}	lnc-SLC25A32-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A32-3:5	chr8	104510404	104510775	-	lnc-SLC25A32-3	lnc-SLC25A32-3:5	XLOC_007177	linc-SLC25A32-1	RIMS2	NA	chr8:104512976-104520633	inter
CUST_24877_PI429285431	0.89939207	A	0.9037657	A	0.996973021262863	0	lncRNA	26418-1_{1..260}	lnc-NTN1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NTN1-3:1	chr17	  9208807	  9209066	+	lnc-NTN1-3	lnc-NTN1-3:1	ENSG00000263708.1	RP11-85B7.4	STX8	NA	chr17:9198807-9218968	inner
LNCA_21_P0014791	12.435154	P	12.649584	P	0.86188661859037	0	lncRNA	XR_132586	XR_132586	XR_132586	NA	NA	LOC100652804	uncharacterized LOC100652804	NA	THC2507863	NA	"PREDICTED: Homo sapiens hypothetical LOC100652804 (LOC100652804), miscRNA [XR_132586]"	chr12:6347203-6347144	hs|12p13.31	Agilent_HUMAN_G3V2	XR_132586	XR_132586	chr12	  6347144	  6347203	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28261_PI429285431	0.89839625	A	0.8866901	A	1.0081470932716	0	lncRNA	29897-1_{1..3000}	n325554|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256893|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256893|2.5535800|-0.2766341	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325554|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256893|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256893|2.5535800|-0.2766341	chr17	 34439684	 34442683	+	NA	NA	NA	NA	TBC1D3B	NA	chr17:34445502-34464720	inter
CUST_41467_PI429285431	1.1631826	A	1.4044038	A	0.846028869992702	0	lncRNA	42658-1_{1..110}	ENST00000385063 ncrna:miRNA chromosome:GRCh37:2:56216085:56216194:-1 gene:ENSG00000207798 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385063 ncrna:miRNA chromosome:GRCh37:2:56216085:56216194:-1 gene:ENSG00000207798 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 56216085	 56216194	-	ENSG00000207798	ENST00000385063	NA	NA	NA	NA	NA	inter
CUST_33099_PI429285431	0.92118925	A	1.4474788	A	0.69433819968874	0	lncRNA	34701-1_{1..1744}	n339788|CR624189|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2235|NULL|-0.9914680|-0.2718073	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339788|CR624189|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2235|NULL|-0.9914680|-0.2718073	chr18	  7740620	  7742363	-	NA	NA	NA	NA	PTPRM	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80chr18:7730620-7759441"	NA	inner
CUST_20858_PI429285431	0.9024857	A	1.1709108	A	0.830225356444181	0	lncRNA	22489-1_{1..1036}	lnc-PLEKHA3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLEKHA3-3:1	chr2	179607608	179608643	+	lnc-PLEKHA3-3	lnc-PLEKHA3-3:1	ENSG00000265760.1	RP11-88L24.1	TTN	"hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60chr2:179597608-179617697"	NA	inner
CUST_20841_PI429285431	5.459883	P	5.526996	P	0.954546245774212	0	lncRNA	22472-1_{1..209}	lnc-RP11-334E6.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-334E6.3.1-1:1	chr11	119252172	119252380	+	lnc-RP11-334E6.3.1-1	lnc-RP11-334E6.3.1-1:1	ENSG00000254740.1	RP11-334E6.3	USP2	"hg19_refFlat_USP2:range=chr11:119227545-1192522275'pad=0,hg19_refFlat_USP2:range=chr11:119227545-1192522275'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60chr11:119242172-119252436"	NA	inner
CUST_46951_PI429285431	17.098734	P	17.201443	P	0.931282646025428	0	lncRNA	51057-1_{1..1855}	"gi|316659410|ref|NR_037688.1| Homo sapiens actin, gamma 1 (ACTG1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|316659410|ref|NR_037688.1| Homo sapiens actin, gamma 1 (ACTG1), transcript variant 3, non-coding RNA"	NW_003871087.1	   164609	   166463	-	71	NR_037688.1	NA	NA	NA	NA	NA	Unknown
CUST_48037_PI429285431	0.97047615	A	0.9062132	A	1.04555064809095	0	lncRNA	51918-1_{1..787}	"gi|410173878|ref|XR_172421.1| PREDICTED: Homo sapiens uncharacterized LOC101060574 (LOC101060574), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173878|ref|XR_172421.1| PREDICTED: Homo sapiens uncharacterized LOC101060574 (LOC101060574), misc_RNA"	NA	NA	NA	NA	NA	XR_172421.1	NA	NA	NA	NA	NA	Unknown
CUST_30333_PI429285431	11.07148	P	10.344478	P	1.6551959267436	0	lncRNA	32109-1_{1..386}	n335249|AY562999|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255510|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255510|-1.0926700|-0.4195078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335249|AY562999|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255510|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255510|-1.0926700|-0.4195078	chr8	 15601082	 15601467	+	NA	NA	NA	NA	TUSC3	NA	chr8:15591082-15624158	inner
CUST_28398_PI429285431	0.91191053	A	0.91374326	A	0.998730454922835	0	lncRNA	30055-1_{1..419}	n325718|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045171|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045171|-1.0547900|-0.2375075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325718|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045171|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045171|-1.0547900|-0.2375075	chr13	 59686486	 59686904	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31192_PI429285431	0.95111346	A	0.9101103	A	1.02882896138157	0	lncRNA	32986-1_{1..1341}	n337632|AL079289|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|11|NULL|-1.1210500|-0.3812214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337632|AL079289|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|11|NULL|-1.1210500|-0.3812214	chrX	 15345758	 15347098	-	NA	NA	NA	NA	PIGA	NA	chrX:15337573-15353676	inner
CUST_20777_PI429285431	1.488911	A	2.852845	A	0.388521407951693	0	lncRNA	22410-1_{1..509}	lnc-C11orf39-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf39-3:1	chr11	131766919	131767427	-	lnc-C11orf39-3	lnc-C11orf39-3:1	ENSG00000238117.1	AP004372.1	NTM	NA	chr11:131756919-131777002	inner
LNCA_21_P0007288	3.7724965	P	3.7574794	P	1.01046342325361	0	lncRNA	TCONS_00019506	NA	NA	NA	NA	XLOC_009305	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009305), lincRNA [TCONS_00019506]"	chr11:121740088-121740147	hs|11q24.1	Agilent_HUMAN_G3V2	TCONS_00019506	TCONS_00019506	chr11	121740088	121740147	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25052_PI429285431	7.159324	P	5.922913	P	2.35611670234133	0	lncRNA	26590-2_{3001..3287}	lnc-BLID-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BLID-1:11	chr11	121974082	121974368	-	lnc-BLID-1	lnc-BLID-1:11	ENSG00000255248.2	RP11-166D19.1	NA	NA	NA	inter
CUST_28999_PI429285431	7.889658	P	8.084946	P	0.873398525119911	0	lncRNA	30723-1_{1..221}	n326483|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098111|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098111|-1.1087700|-0.2758818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326483|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098111|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098111|-1.1087700|-0.2758818	chr1	110626678	110626898	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17058_PI429285431	0.89136237	A	0.88966143	A	1.00117969706111	0	lncRNA	18767-1_{1..636}	lnc-CHAC2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHAC2-2:1	chr2	 52925575	 52926210	+	lnc-CHAC2-2	lnc-CHAC2-2:1	XLOC_001469	linc-CHAC2-2	NA	NA	NA	inter
CUST_47873_PI429285431	4.8042183	P	4.5485005	P	1.19392962427368	0	lncRNA	51771-2_{3001..6000}	"gi|410171545|ref|XR_171240.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410171545|ref|XR_171240.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	XR_171240.1	NA	NA	NA	NA	NA	Unknown
CUST_15571_PI429285431	0.9006103	A	1.3004931	A	0.757919851775327	0	lncRNA	17255-2_{3001..4846}	lnc-ZADH2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZADH2-1:2	chr18	 72884639	 72886484	-	lnc-ZADH2-1	lnc-ZADH2-1:2	XLOC_012885	linc-FAM69C-1	NA	NA	NA	inter
CUST_30748_PI429285431	4.869838	P	5.192268	P	0.799721733115525	0	lncRNA	32533-1_{1..207}	n336555|Z11406|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326354|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326354|-1.0116000|-0.2448049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336555|Z11406|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326354|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326354|-1.0116000|-0.2448049	chr7	 38289104	 38289310	-	NA	NA	NA	NA	TARP	NA	chr7:38295938-38313248	inner
LNCA_21_P0008519	2.1534941	A	2.738354	A	0.666714079952997	0	lncRNA	TCONS_00023029	NA	NA	NA	NA	XLOC_010901	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010901), lincRNA [TCONS_00023029]"	chr14:90527941-90528000	hs|14q32.11	Agilent_HUMAN_G3V2	TCONS_00023029	TCONS_00023029	chr14	 90527941	 90528000	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38439_PI429285431	2.7111535	A	1.5089636	A	2.30088662936927	0	lncRNA	39465-1_{1..2586}	n382675|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bia.1||3.0474800|-0.3414599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382675|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bia.1||3.0474800|-0.3414599	chr15	 83009407	 83011992	-	NA	NA	NA	NA	NA	NA	NA	inner
CUST_8416_PI429285431	1.2137214	A	0.9002777	A	1.24267040556307	0	lncRNA	9990-2_{3001..4971}	lnc-KLRG2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLRG2-1:1	chr7	139361716	139363686	-	lnc-KLRG2-1	lnc-KLRG2-1:1	ENSG00000248427	ENST00000510916	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20"	NA	inner
CUST_10871_PI429285431	5.957218	P	6.011956	P	0.962769270517555	0	lncRNA	12409-1_{1..930}	lnc-LAT2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LAT2-1:2	chr7	 73669345	 73670274	+	lnc-LAT2-1	lnc-LAT2-1:2	XLOC_006144	linc-CLIP2	RFC2	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.51;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90chr7:73659345-73668738"	NA	inter
CUST_9472_PI429285431	3.8385384	P	4.02259	P	0.880227530435017	0	lncRNA	10978-1_{1..233}	lnc-HEXA-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HEXA-3:4	chr15	 72766216	 72766448	-	lnc-HEXA-3	lnc-HEXA-3:4	XLOC_011523	linc-HEXA-1	ARIH1	NA	chr15:72766667-72776399	inter
CUST_44348_PI429285431	7.514868	P	7.716733	P	0.869425912699895	0	lncRNA	48972-1_{1..470}	"gi|397139059|ref|XR_108543.2| PREDICTED: Homo sapiens uncharacterized LOC100507376, transcript variant 1 (LOC100507376), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139059|ref|XR_108543.2| PREDICTED: Homo sapiens uncharacterized LOC100507376, transcript variant 1 (LOC100507376), misc_RNA"	Chr4	  6672455	  6672924	-	100507376	XR_108543.3	NA	NA	NA	NA	NA	inter
CUST_13355_PI429285431	1.4253613	A	2.6097834	A	0.440000753659899	0	lncRNA	14992-1_{1..202}	lnc-CYLC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CYLC2-1:1	chr9	106015315	106015516	+	lnc-CYLC2-1	lnc-CYLC2-1:1	XLOC_007496	linc-SMC2-2	NA	NA	NA	inter
CUST_50279_PI429285431	13.036615	P	12.9847355	P	1.03661451496913	0	lncRNA	54002-1_{1..208}	hg19_lincRNAsTranscripts_TCONS_l2_00029402 range=chr9:74622777-74623052 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029402 range=chr9:74622777-74623052 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 74622777	 74622984	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26644_PI429285431	0.89965975	A	0.9031818	A	0.997561678519659	0	lncRNA	28145-2_{3001..5278}	lnc-SAP30-5:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:8	chr4	174460999	174463276	+	lnc-SAP30-5	lnc-SAP30-5:8	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174447999-174451378	inter
CUST_5865_PI429285431	1.213912	A	0.90617466	A	1.23776492031785	0	lncRNA	5794-1_{1..337}	"transcript_id ""ENST00000588260.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588260.1"" | genecode_v17"	chr17	 42405981	 42406317	+	ENSG00000267211.1	ENST00000588260.1	RP5-1067M6.3	RP5-1067M6.3-001	SLC25A39	NA	chr17:42396993-42402217	inter
CUST_30428_PI429285431	7.7479362	P	7.8539	P	0.929183988976097	0	lncRNA	32208-1_{1..497}	n335563|CR450346|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267255|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267255|2.3970100|-0.4901612	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335563|CR450346|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267255|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267255|2.3970100|-0.4901612	chr5	 89689884	 89690380	-	NA	NA	NA	NA	CETN3	NA	chr5:89689528-89705603	inner
CUST_21_PI429285431	4.194057	P	4.4180794	P	0.85617499104496	0	lncRNA	20-1_{1..2379}	"transcript_id ""ENST00000519691.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000519691.1"" | genecode_v17"	chr8	 37454998	 37457376	-	ENSG00000254290.1	ENST00000519691.1	RP11-150O12.3	RP11-150O12.3-001	NA	NA	NA	inter
CUST_46079_PI429285431	4.878011	P	5.255527	P	0.76976180894946	0	lncRNA	50350-1_{1..423}	"gi|341915623|ref|XR_132780.1| PREDICTED: Homo sapiens uncharacterized LOC100506869 (LOC100506869), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915623|ref|XR_132780.1| PREDICTED: Homo sapiens uncharacterized LOC100506869 (LOC100506869), misc_RNA"	Chr12	 58985326	 58985748	+	100506869	XR_132780.2	NA	NA	NA	NA	NA	inter
CUST_32511_PI429285431	2.7823706	A	3.5387807	A	0.591967509525763	0	lncRNA	34178-1_{1..1120}	n339115|BC033975|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1545|NULL|-1.1365700|-0.3986365	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339115|BC033975|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1545|NULL|-1.1365700|-0.3986365	chr2	207685917	207687036	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_293_PI429285431	0.8939038	A	0.8923001	A	1.00111221818988	0	lncRNA	285-1_{1..349}	"transcript_id ""ENST00000437080.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437080.1"" | genecode_v17"	chr1	 81000663	 81001011	-	ENSG00000224326.1	ENST00000437080.1	RP11-115A15.1	RP11-115A15.1-001	NA	NA	NA	inter
LNCA_21_P0005033	1.9927812	A	0.9038396	A	2.12717923626339	0	lncRNA	TCONS_00012211	NA	NA	NA	NA	XLOC_005764	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005764), lincRNA [TCONS_00012211]"	chr6:72124086-72124027	hs|6q13	Agilent_HUMAN_G3V2	TCONS_00012211	TCONS_00012211	chr6	 72124027	 72124086	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007077	5.8445334	P	6.2116823	P	0.77531318244225	0	lncRNA	TCONS_00018816	NA	NA	NA	NA	XLOC_008613	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008613), lincRNA [TCONS_00018816]"	chr10:112777107-112779659	hs|10q25.2	Agilent_HUMAN_G3V2	TCONS_00018816	TCONS_00018816	chr10	112777107	112779659	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36778_PI429285431	3.032976	A	3.001451	A	1.02209195663027	0	lncRNA	37950-1_{1..813}	n345257|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_806|NULL|-1.4067500|-0.3336836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345257|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_806|NULL|-1.4067500|-0.3336836	chr14	 51731450	 51732262	-	NA	NA	NA	NA	TMX1	NA	chr14:51721450-51724373	inter
CUST_28567_PI429285431	3.3784847	P	3.0378911	P	1.26627749941947	0	lncRNA	30245-1_{1..1487}	n325924|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049144|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049144|-1.1322900|-0.4199147	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325924|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049144|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049144|-1.1322900|-0.4199147	chr10	 87199328	 87200814	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33743_PI429285431	0.8994223	A	0.8933724	A	1.00420227603112	0	lncRNA	35300-1_{1..2386}	n340521|AK092482|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2983|NULL|-1.2842000|-0.4344433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340521|AK092482|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2983|NULL|-1.2842000|-0.4344433	chr5	 76723251	 76725636	-	NA	NA	NA	NA	PDE8B	NA	chr5:76713251-76724081	inner
CUST_47028_PI429285431	5.335565	P	5.9239044	P	0.665108032706916	0	lncRNA	51118-1_{1..959}	"gi|310124463|ref|XR_109553.1| PREDICTED: Homo sapiens EPWW6493 (LOC100129831), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124463|ref|XR_109553.1| PREDICTED: Homo sapiens EPWW6493 (LOC100129831), misc_RNA"	NA	NA	NA	NA	NA	XR_109553.1	NA	NA	NA	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50"	NA	Unknown
CUST_34153_PI429285431	0.8975946	A	0.89508206	A	1.00174307741344	0	lncRNA	35671-1_{1..540}	n340996|AF147368|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3462|NULL|-1.2473900|-0.3773145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340996|AF147368|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3462|NULL|-1.2473900|-0.3773145	chr11	 27489859	 27490398	+	NA	NA	NA	NA	LGR4	NA	chr11:27479859-27494334	inner
LNCA_21_P0005528	2.3308947	A	2.9938056	A	0.631602637127003	0	lncRNA	TCONS_00013947	NA	NA	NA	NA	XLOC_006596	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006596), lincRNA [TCONS_00013947]"	chr7:127284602-127284543	hs|7q32.1	Agilent_HUMAN_G3V2	TCONS_00013947	TCONS_00013947	chr7	127284543	127284602	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29529_PI429285431	8.157589	P	8.305187	P	0.902752239967721	0	lncRNA	31287-1_{1..210}	n332989|AF124248|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000070449|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000070449|-0.1801800|-0.0972979	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332989|AF124248|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000070449|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000070449|-0.1801800|-0.0972979	chr1	199997011	199997220	+	NA	NA	NA	NA	NR5A2	NA	chr1:199996770-200018897	inner
CUST_33330_PI429285431	5.3105383	P	5.613829	P	0.810401809181616	0	lncRNA	34912-2_{3001..3639}	n340046|BC040662|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2501|NULL|-0.5016410|-0.4373676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340046|BC040662|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2501|NULL|-0.5016410|-0.4373676	chr10	 68871454	 68872092	+	NA	NA	NA	NA	CTNNA3	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chr10:68858454-68882073"	NA	inner
CUST_14946_PI429285431	4.2623043	P	3.7714612	P	1.40526586249849	0	lncRNA	16610-1_{1..686}	lnc-ELTD1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELTD1-5:1	chr1	 79790271	 79790956	-	lnc-ELTD1-5	lnc-ELTD1-5:1	XLOC_000881	linc-ELTD1-7	NA	NA	NA	inter
CUST_25615_PI429285431	2.2764428	A	2.1419625	A	1.09769732059959	0	lncRNA	27144-1_{1..1630}	lnc-KIAA1967-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1967-2:3	chr8	 22614477	 22616106	+	lnc-KIAA1967-2	lnc-KIAA1967-2:3	ENSG00000253125.1	RP11-459E5.1	PEBP4	NA	chr8:22604477-22625705	inner
CUST_45160_PI429285431	2.3635721	A	1.7598583	A	1.519623365555	0	lncRNA	49636-1_{1..3000}	"gi|334278909|ref|NR_038335.1| Homo sapiens clusterin (CLU), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|334278909|ref|NR_038335.1| Homo sapiens clusterin (CLU), transcript variant 3, non-coding RNA"	Chr8	 27454434	 27457433	-	1191	NR_038335.1	NA	NA	NA	NA	NA	inter
CUST_24459_PI429285431	1.9425386	A	2.0906029	A	0.902460504475622	0	lncRNA	26012-1_{1..459}	lnc-KIF7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIF7-1:1	chr15	 90125443	 90125901	-	lnc-KIF7-1	lnc-KIF7-1:1	ENSG00000259615.1	RP11-429B14.3	C15orf42	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40chr15:90118818-90135528"	NA	inner
CUST_24586_PI429285431	3.6224644	P	3.524925	P	1.06994704875402	0	lncRNA	26135-1_{1..776}	lnc-SNX7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNX7-2:1	chr1	 98263024	 98263799	+	lnc-SNX7-2	lnc-SNX7-2:1	ENSG00000235777.1	DPYD-AS2	DPYD	NA	chr1:98253024-98273424	inner
CUST_2691_PI429285431	1.0013218	A	1.117445	A	0.922663697747018	0	lncRNA	2677-1_{1..292}	"transcript_id ""ENST00000448126.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448126.1"" | genecode_v17"	chr6	161119320	161119611	+	ENSG00000224477.1	ENST00000448126.1	RP1-81D8.3	RP1-81D8.3-001	PLG	NA	chr6:161123225-161131664	inter
CUST_24702_PI429285431	1.052122	A	2.1601045	A	0.463942365857509	0	lncRNA	26248-1_{1..446}	lnc-TIMM9-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMM9-2:2	chr14	 58764673	 58765118	-	lnc-TIMM9-2	lnc-TIMM9-2:2	ENSG00000257621.2	RP11-349A22.5	ARID4A	NA	chr14:58754673-58774851	inter
CUST_16241_PI429285431	1.252079	A	0.8995122	A	1.27683030605755	0	lncRNA	17948-1_{1..702}	lnc-MAP3K8-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP3K8-6:1	chr10	 30248646	 30249347	+	lnc-MAP3K8-6	lnc-MAP3K8-6:1	XLOC_008434	linc-MAP3K8-2	NA	NA	NA	inter
CUST_40313_PI429285431	0.9252142	A	0.89430594	A	1.02165511429229	0	lncRNA	41116-1_{1..1667}	n408347|NR_029420|lncRNA|Homosapiens||RefGeneNoncode|NR_029420||5.0055600|-0.2967126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408347|NR_029420|lncRNA|Homosapiens||RefGeneNoncode|NR_029420||5.0055600|-0.2967126	chr7	 56491396	 56493062	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6528_PI429285431	1.7560551	A	1.9172156	A	0.894305404662372	0	lncRNA	6471-1_{1..2266}	"transcript_id ""ENST00000593354.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593354.1"" | genecode_v17"	chr19	 42337740	 42340005	-	ENSG00000267839.1	ENST00000593354.1	AC020956.3	AC020956.3-001	DMRTC2	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr19:42349086-42350005"	NA	inter
CUST_51963_PI429285431	1.0782694	A	0.9062188	A	1.12665874338509	0	lncRNA	55506-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00016247 range=chr20:37230531-37279254 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016247 range=chr20:37230531-37279254 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 37230531	 37233530	+	NA	NA	NA	NA	ARHGAP40	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00chr20:37230577-37279295"	NA	inner
CUST_14956_PI429285431	0.8919184	A	0.90031177	A	0.994199050112612	0	lncRNA	16620-1_{1..518}	lnc-FGFBP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGFBP1-1:1	chr4	 15857529	 15858046	-	lnc-FGFBP1-1	lnc-FGFBP1-1:1	XLOC_003894	linc-FBXL5-2	CD38	NA	chr4:15847529-15850706	inter
CUST_44981_PI429285431	8.997193	P	9.466931	P	0.722095721731298	0	lncRNA	49491-1_{1..1667}	"gi|223941841|ref|NR_026912.1| Homo sapiens abhydrolase domain containing 11 (ABHD11), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223941841|ref|NR_026912.1| Homo sapiens abhydrolase domain containing 11 (ABHD11), transcript variant 4, non-coding RNA"	NW_003871064.1	  1265333	  1266999	-	83451	NR_026912.1	NA	NA	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60"	NA	Unknown
CUST_18713_PI429285431	0.9054152	A	1.0841811	A	0.883458394894718	0	lncRNA	20411-1_{1..729}	lnc-ACSL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACSL1-1:1	chr4	185776623	185777351	-	lnc-ACSL1-1	lnc-ACSL1-1:1	ENSG00000251230	RP11-701P16.5	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	inter
CUST_43748_PI429285431	0.9027647	A	0.90994513	A	0.995035270403879	0	lncRNA	48488-3_{6001..7682}	"gi|257153363|ref|NR_028393.1| Homo sapiens TSNAX-DISC1 readthrough (TSNAX-DISC1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|257153363|ref|NR_028393.1| Homo sapiens TSNAX-DISC1 readthrough (TSNAX-DISC1), transcript variant 1, non-coding RNA"	Chr1	231670399	231672080	+	100303453	NR_028393.1	NA	NA	NA	NA	NA	inter
CUST_16303_PI429285431	1.5573984	A	1.4542208	A	1.07413669286561	0	lncRNA	18009-1_{1..328}	lnc-AJAP1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AJAP1-3:3	chr1	  5080795	  5081122	+	lnc-AJAP1-3	lnc-AJAP1-3:3	XLOC_000036	linc-KCNAB2-2	NA	NA	NA	inter
CUST_10555_PI429285431	0.9165494	A	1.6800451	A	0.589067269706125	0	lncRNA	12086-1_{1..230}	lnc-ADAMTS9-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAMTS9-3:3	chr3	 64961778	 64962007	-	lnc-ADAMTS9-3	lnc-ADAMTS9-3:3	XLOC_003149	linc-ADAMTS9-2	NA	NA	NA	inter
CUST_124_PI429285431	0.92115104	A	0.9526572	A	0.978398325601823	0	lncRNA	116-1_{1..1040}	"transcript_id ""ENST00000586288.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586288.1"" | genecode_v17"	chr1	   719776	   720815	+	ENSG00000237491.3	ENST00000586288.1	RP11-206L10.9	RP11-206L10.9-010	NA	NA	NA	inter
LNCA_21_P0008274	4.06532	P	5.411638	P	0.393294522827207	0	lncRNA	BC038722	NA	BC038722	NA	Hs.547420	XLOC_011011	NA	NA	THC2608688	NA	"BROAD Institute lincRNA (XLOC_011011), lincRNA [TCONS_00022366]"	chr14:45552943-45552884	hs|14q21.2	Agilent_HUMAN_G3V2	BC038722	BC038722	chr14	 45552884	 45552943	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34146_PI429285431	0.9274198	A	1.4056565	A	0.717854468747271	0	lncRNA	35664-1_{1..1867}	n340985|AK055009|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3451|NULL|-1.1859300|-0.2290613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340985|AK055009|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3451|NULL|-1.1859300|-0.2290613	chr11	 17816330	 17818196	+	NA	NA	NA	NA	SERGEF	NA	chr11:17809595-17828197	inner
LNCA_21_P0014137	0.9144771	A	0.9240413	A	0.993392527717584	0	lncRNA	XR_108555	XR_108555	XR_108555	NA	NA	LOC100506048	uncharacterized LOC100506048	NA	THC2663895	NA	"PREDICTED: Homo sapiens hypothetical LOC100506048, transcript variant 2 (LOC100506048), miscRNA [XR_108555]"	chr4:26861309-26861250	hs|4p15.2	Agilent_HUMAN_G3V2	XR_108555	XR_108555	chr4	 26861250	 26861309	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40444_PI429285431	6.332208	P	5.5030503	P	1.77664778521522	0	lncRNA	41221-1_{1..2853}	n409344|NR_033704|lncRNA|Homosapiens||RefGeneNoncode|NR_033704||1.2494400|-0.4056288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409344|NR_033704|lncRNA|Homosapiens||RefGeneNoncode|NR_033704||1.2494400|-0.4056288	chr1	171669295	171672147	-	NA	NA	NA	NA	VAMP4	NA	chr1:171669296-171711379	inter
CUST_16548_PI429285431	4.3737855	P	4.8646445	P	0.71160127468167	0	lncRNA	18249-1_{1..459}	lnc-C16orf95-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C16orf95-1:7	chr16	 87296234	 87296692	-	lnc-C16orf95-1	lnc-C16orf95-1:7	XLOC_012052	linc-MTHFSD-1	NA	NA	NA	inter
LNCA_21_P0006535	2.3714483	A	2.6610076	A	0.818151941232798	0	lncRNA	TCONS_00017322	NA	NA	NA	NA	XLOC_008165	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008165), lincRNA [TCONS_00017322]"	chrX:49969234-49969175	hs|Xp11.22	Agilent_HUMAN_G3V2	TCONS_00017322	TCONS_00017322	chrX	 49969175	 49969234	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47964_PI429285431	0.9044439	A	0.9025129	A	1.00133936335267	0	lncRNA	51855-1_{1..1591}	"gi|410172635|ref|XR_171896.1| PREDICTED: Homo sapiens uncharacterized LOC100287413 (LOC100287413), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172635|ref|XR_171896.1| PREDICTED: Homo sapiens uncharacterized LOC100287413 (LOC100287413), misc_RNA"	NA	NA	NA	NA	NA	XR_171896.1	NA	NA	NA	NA	NA	Unknown
CUST_2827_PI429285431	3.3683877	A	3.2674906	P	1.07244012246462	0	lncRNA	2811-1_{1..692}	"transcript_id ""ENST00000440455.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440455.1"" | genecode_v17"	chr7	 49269733	 49270424	+	ENSG00000234686.1	ENST00000440455.1	AC010971.1	AC010971.1-001	NA	NA	NA	inter
CUST_22460_PI429285431	1.1577364	A	1.2533833	A	0.935852519960074	0	lncRNA	24048-1_{1..632}	lnc-CLNS1A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CLNS1A-2:1	chr11	 77450233	 77450864	-	lnc-CLNS1A-2	lnc-CLNS1A-2:1	ENSG00000255409.1	RSF1-IT1	RSF1	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-22.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60chr11:77440233-77460613"	NA	inner
CUST_31872_PI429285431	0.92596066	A	0.9686538	A	0.970840944847993	0	lncRNA	33604-1_{1..2336}	n338424|AK130477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|821|NULL|-1.2335800|-0.4036412	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338424|AK130477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|821|NULL|-1.2335800|-0.4036412	chr1	185487782	185490117	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47039_PI429285431	8.901521	P	8.804397	P	1.06963901967598	0	lncRNA	51128-1_{1..2248}	"gi|223278351|ref|NR_026709.1| Homo sapiens C-type lectin domain family 4, member M (CLEC4M), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|223278351|ref|NR_026709.1| Homo sapiens C-type lectin domain family 4, member M (CLEC4M), transcript variant 6, non-coding RNA"	Chr19	  7828035	  7830282	+	10332	NR_026709.1	NA	NA	NA	NA	NA	inter
CUST_39490_PI429285431	1.3122847	A	1.8498497	A	0.688932718198476	0	lncRNA	40437-1_{1..1198}	n387200|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011abu.1||3.7722700|-0.3498342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387200|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011abu.1||3.7722700|-0.3498342	chr21	  9711934	  9713131	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4835_PI429285431	1.9043181	A	1.7666546	A	1.10012198255838	0	lncRNA	4778-1_{1..443}	"transcript_id ""ENST00000556183.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556183.1"" | genecode_v17"	chr14	 55729626	 55730068	-	ENSG00000258413.1	ENST00000556183.1	RP11-665C16.6	RP11-665C16.6-002	FBXO34	NA	chr14:55738021-55748793	inner
CUST_36268_PI429285431	8.235105	P	8.510956	P	0.825962965101965	0	lncRNA	37506-1_{1..3000}	n344800|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_349|NULL|-1.3734400|-0.3255858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n344800|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_349|NULL|-1.3734400|-0.3255858	chr15	 52207580	 52210579	+	NA	NA	NA	NA	TMOD3	"hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-21.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90;hg19_refFlat_LEO1:range=chr15:52230353-522639425'pad=0,hg19_refFlat_LEO1:range=chr15:52230353-522639425'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60chr15:52197580-52204335"	NA	inter
CUST_20319_PI429285431	2.4392421	A	2.7927904	A	0.782656788979061	0	lncRNA	21962-1_{1..662}	lnc-OLFML2A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OLFML2A-2:1	chr9	127460524	127461185	+	lnc-OLFML2A-2	lnc-OLFML2A-2:1	ENSG00000224020.1	MIR181A2HG	NR6A1	NA	chr9:127450524-127470910	inner
CUST_20338_PI429285431	4.175089	P	4.353417	P	0.88372659097131	0	lncRNA	21980-1_{1..1243}	lnc-LYZL1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LYZL1-3:5	chr10	 29771762	 29773004	+	lnc-LYZL1-3	lnc-LYZL1-3:5	ENSG00000224597.3	RP11-534G20.3	SVIL	NA	chr10:29761762-29782847	inner
CUST_21564_PI429285431	3.2774115	P	3.2655725	P	1.00823993237084	0	lncRNA	23180-1_{1..497}	lnc-FADD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FADD-1:1	chr11	 69995655	 69996151	+	lnc-FADD-1	lnc-FADD-1:1	ENSG00000255143.1	RP11-805J14.3	ANO1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30chr11:69985655-70005729"	NA	inter
LNCA_21_P0008022	0.9179937	A	0.9174586	A	1.00037097184936	0	lncRNA	ENST00000413637	NA	NA	NA	NA	XLOC_010733	NA	ENST00000413637	NA	NA	"BROAD Institute lincRNA (XLOC_010733), lincRNA [TCONS_00021699]"	chr13:112976940-112976881	hs|13q34	Agilent_HUMAN_G3V2	ENST00000413637	ENST00000413637	chr13	112976881	112976940	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24878_PI429285431	1.2064046	A	1.0615759	A	1.10559937095567	0	lncRNA	26419-1_{1..765}	lnc-AC006156.2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC006156.2-2:2	chrY	  9234756	  9235520	-	lnc-AC006156.2-2	lnc-AC006156.2-2:2	ENSG00000228383.2	FAM197Y7	FAM197Y6	NA	chrY:9224756-9233681	inner
CUST_46737_PI429285431	13.39407	P	13.772583	P	0.769230035163585	0	lncRNA	50889-1_{1..1047}	"gi|320089577|ref|NR_037715.1| Homo sapiens ribonuclease, RNase K (RNASEK), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|320089577|ref|NR_037715.1| Homo sapiens ribonuclease, RNase K (RNASEK), transcript variant 2, non-coding RNA"	Chr17	  6915736	  6916782	+	440400	NR_037715.1	NA	NA	NA	NA	NA	inter
CUST_6680_PI429285431	4.2610245	P	3.9055047	P	1.27944648012765	0	lncRNA	6628-1_{1..587}	"transcript_id ""ENST00000435497.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000435497.1"" | genecode_v17"	chr20	 30073581	 30074167	+	ENSG00000233354.1	ENST00000435497.1	LINC00028	LINC00028-001	REM1	NA	chr20:30063581-30072708	inter
CUST_30167_PI429285431	3.859539	P	1.9717464	A	3.70068566805515	0	lncRNA	31941-1_{1..345}	n334856|AJ310883|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247069|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247069|1.5628100|-0.4128851	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334856|AJ310883|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247069|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247069|1.5628100|-0.4128851	chr2	167159707	167160051	-	NA	NA	NA	NA	SCN9A	NA	chr2:167149707-167173041	inner
LNCA_21_P0006119	0.9148091	A	0.9121209	A	1.00186505530696	0	lncRNA	TCONS_00015905	NA	NA	NA	NA	XLOC_007263	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007263), lincRNA [TCONS_00015905]"	chr9:1328426-1328485	hs|9p24.3	Agilent_HUMAN_G3V2	TCONS_00015905	TCONS_00015905	chr9	  1328426	  1328485	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6602_PI429285431	6.146594	P	6.175073	P	0.980453422248505	0	lncRNA	6550-1_{1..326}	"transcript_id ""ENST00000590579.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590579.1"" | genecode_v17"	chr19	 57047525	 57047850	-	ENSG00000267421.2	ENST00000590579.1	AC005498.3	AC005498.3-002	ZNF471	NA	chr19:57037525-57040270	inter
CUST_46803_PI429285431	6.472769	P	5.184743	P	2.44193703310773	0	lncRNA	50948-2_{3001..4197}	"gi|319996647|ref|NR_037713.1| Homo sapiens ring finger and FYVE-like domain containing E3 ubiquitin protein ligase (RFFL), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|319996647|ref|NR_037713.1| Homo sapiens ring finger and FYVE-like domain containing E3 ubiquitin protein ligase (RFFL), transcript variant 1, non-coding RNA"	Chr17	 33339131	 33340327	-	117584	NR_037713.1	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80"	NA	inter
CUST_19979_PI429285431	7.206146	P	7.197476	P	1.00602767984497	0	lncRNA	21632-1_{1..3000}	lnc-DLX5-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DLX5-2:7	chr7	 96632821	 96635820	-	lnc-DLX5-2	lnc-DLX5-2:7	ENSG00000231764.2	DLX6-AS1	DLX6	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10chr7:96635290-96640352"	NA	inter
CUST_32623_PI429285431	0.90118	A	0.8930707	A	1.00563676554626	0	lncRNA	34282-1_{1..1223}	n339246|BC029607|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1678|NULL|-1.0454600|-0.2186727	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n339246|BC029607|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1678|NULL|-1.0454600|-0.2186727	chr3	  9539887	  9541109	-	NA	NA	NA	NA	LHFPL4	NA	chr3:9540045-9551253	inner
LNCA_21_P0006303	3.472014	P	2.9249735	A	1.46108539423244	0	lncRNA	TCONS_00016441	NA	NA	NA	NA	XLOC_007808	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007808), lincRNA [TCONS_00016441]"	chr9:102347964-102347905	hs|9q22.33	Agilent_HUMAN_G3V2	TCONS_00016441	TCONS_00016441	chr9	102347905	102347964	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_590_PI429285431	3.0418575	A	2.0693293	A	1.96227630574712	0	lncRNA	582-1_{1..216}	"transcript_id ""ENST00000439440.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000439440.1"" | genecode_v17"	chr1	222988453	222988668	+	ENSG00000228106.1	ENST00000439440.1	RP11-452F19.3	RP11-452F19.3-005	DISP1	NA	chr1:222988431-223010924	inner
CUST_44873_PI429285431	10.8854475	P	11.191126	P	0.809061625083106	0	lncRNA	49397-1_{1..599}	"gi|325152858|ref|NR_015343.2| Homo sapiens uncharacterized LOC389458 (LOC389458), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|325152858|ref|NR_015343.2| Homo sapiens uncharacterized LOC389458 (LOC389458), non-coding RNA"	Chr7	  5111691	  5112289	+	389458	NR_015343.2	NA	NA	NA	NA	NA	inter
CUST_11549_PI429285431	0.89763176	A	0.89530337	A	1.00161522002865	0	lncRNA	13122-1_{1..586}	lnc-GPR101-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR101-1:1	chrX	136646490	136647075	-	lnc-GPR101-1	lnc-GPR101-1:1	XLOC_008246	linc-GPR101	ZIC3	NA	chrX:136648346-136654259	inter
CUST_15737_PI429285431	3.7859309	P	4.1782866	P	0.761884547507796	0	lncRNA	17423-1_{1..1051}	lnc-CCDC166-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC166-1:1	chr8	144795714	144796764	-	lnc-CCDC166-1	lnc-CCDC166-1:1	XLOC_007254	linc-LOC100130274	MAPK15	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.21;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20chr8:144798507-144804633"	NA	inter
CUST_23752_PI429285431	5.111635	P	5.651637	P	0.6877699556176	0	lncRNA	25315-1_{1..543}	lnc-ANGPT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANGPT2-1:1	chr8	  6565662	  6566204	-	lnc-ANGPT2-1	lnc-ANGPT2-1:1	ENSG00000249898.3	CTD-2541M15.1	AGPAT5	NA	chr8:6565878-6575730	inter
CUST_12407_PI429285431	0.8931257	A	0.8924284	A	1.00048344835251	0	lncRNA	14019-1_{1..591}	lnc-TGFBI-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGFBI-1:1	chr5	135524233	135524823	+	lnc-TGFBI-1	lnc-TGFBI-1:1	XLOC_004566	linc-MYOT-4	SMAD5	NA	chr5:135514233-135518422	inter
LNCA_21_P0012611	1.4415703	A	1.8851027	A	0.735331962151054	0	lncRNA	TCONS_l2_00020758	NA	NA	NA	NA	XLOC_l2_010831	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010831), lincRNA [TCONS_l2_00020758]"	chr4:129404613-129411223	hs|4q28.2	Agilent_HUMAN_G3V2	TCONS_l2_00020758	TCONS_l2_00020758	chr4	129404613	129411223	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36777_PI429285431	6.1579943	P	5.6519456	P	1.42015529687668	0	lncRNA	37949-1_{1..2314}	n345256|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_805|NULL|-1.4006000|-0.2328721	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345256|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_805|NULL|-1.4006000|-0.2328721	chr14	 50502265	 50504578	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00"	NA	inter
CUST_14999_PI429285431	0.8937641	A	0.89805365	A	0.997031126359205	0	lncRNA	16661-1_{1..294}	lnc-SCN11A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCN11A-1:1	chr3	 39024654	 39024947	-	lnc-SCN11A-1	lnc-SCN11A-1:1	XLOC_003087	linc-SCN11A-2	NA	NA	NA	inter
CUST_41304_PI429285431	0.90764993	A	0.9055482	A	1.00145786988438	0	lncRNA	42307-1_{1..91}	ENST00000585029 ncrna:miRNA chromosome:GRCh37:19:8454174:8454264:-1 gene:ENSG00000265390 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585029 ncrna:miRNA chromosome:GRCh37:19:8454174:8454264:-1 gene:ENSG00000265390 gene_biotype:miRNA transcript_biotype:miRNA	chr19	  8454174	  8454264	-	ENSG00000265390	ENST00000585029	NA	NA	RAB11B	NA	chr19:8455205-8464264	inter
CUST_7822_PI429285431	4.089489	P	4.30846	P	0.859178025341556	0	lncRNA	9446-1_{1..826}	lnc-CTH-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CTH-6:3	chr1	 71733588	 71734413	+	lnc-CTH-6	lnc-CTH-6:3	ENSG00000229956	RP11-386O9.1	NA	NA	NA	inter
CUST_27915_PI429285431	2.4759295	A	2.8503878	A	0.771395000052679	0	lncRNA	29516-2_{3001..3090}	n325159|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129613|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129613|-1.0586500|-0.3378336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325159|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129613|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129613|-1.0586500|-0.3378336	chr2	118310982	118311071	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29622_PI429285431	2.7896879	A	1.4781942	A	2.48198380176314	0	lncRNA	31383-1_{1..309}	n333183|AF427341|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079492|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079492|1.0804600|-0.3571220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333183|AF427341|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079492|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079492|1.0804600|-0.3571220	chr10	127540972	127541280	-	NA	NA	NA	NA	DHX32	NA	chr10:127530972-127558334	inner
LNCA_21_P0014721	3.3181617	P	3.653219	P	0.792752649963667	0	lncRNA	ENST00000514732	XR_112634	XR_112634	NA	Hs.573073	LOC100506564	NA	ENST00000514732	THC2549680	NA	"PREDICTED: Homo sapiens hypothetical LOC100506564 (LOC100506564), miscRNA [XR_112634]"	chr4:57467261-57469419	hs|4q12	Agilent_HUMAN_G3V2	ENST00000514732	ENST00000514732	chr4	 57467261	 57469419	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18220_PI429285431	4.977565	P	5.39598	P	0.748246224860311	0	lncRNA	19955-1_{1..616}	lnc-KLF14-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KLF14-2:3	chr7	130792479	130793094	-	lnc-KLF14-2	lnc-KLF14-2:3	ENSG00000231721	AC058791.2	MKLN1	NA	chr7:130794855-130802822	inter
CUST_30511_PI429285431	4.2973094	P	2.4036994	A	3.71563812243322	0	lncRNA	32291-1_{1..607}	n335668|CR614132|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000293327|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000293327|-0.0888571|-0.2292224	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335668|CR614132|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000293327|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000293327|-0.0888571|-0.2292224	chr2	172179737	172180343	-	NA	NA	NA	NA	METTL8	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-28.50chr2:172173912-172190344"	NA	inner
CUST_10633_PI429285431	1.425982	A	0.94087887	A	1.39968591754335	0	lncRNA	12166-1_{1..889}	lnc-NID2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NID2-4:1	chr14	 52726049	 52726937	-	lnc-NID2-4	lnc-NID2-4:1	XLOC_011023	linc-NID2-2	PTGDR	NA	chr14:52734431-52736892	inter
LNCA_21_P0006600	1.5284293	A	0.8939867	A	1.55233787249457	0	lncRNA	TCONS_00017630	NA	NA	NA	NA	XLOC_008282	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008282), lincRNA [TCONS_00017630]"	chrY:7388285-7388344	hs|Yp11.2	Agilent_HUMAN_G3V2	TCONS_00017630	TCONS_00017630	chrY	  7388285	  7388344	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29844_PI429285431	1.3823003	A	0.8954144	A	1.4014166093302	0	lncRNA	31607-1_{1..328}	n333739|L06882|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191744|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191744|1.4949800|-0.2704519	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333739|L06882|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191744|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191744|1.4949800|-0.2704519	chr14	 22409369	 22409696	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44927_PI429285431	0.90633595	A	0.8988514	A	1.00520137515772	0	lncRNA	49441-1_{1..393}	"gi|386869323|ref|NR_046711.1| Homo sapiens POU6F2 antisense RNA 1 (POU6F2-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|386869323|ref|NR_046711.1| Homo sapiens POU6F2 antisense RNA 1 (POU6F2-AS1), non-coding RNA"	Chr7	 39444197	 39444589	-	100861520	NR_046711.1	NA	NA	NA	NA	NA	inter
CUST_25685_PI429285431	0.9219357	A	0.9245378	A	0.99819798729952	0	lncRNA	27214-1_{1..541}	lnc-MAT2B-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAT2B-3:10	chr5	163913680	163914220	+	lnc-MAT2B-3	lnc-MAT2B-3:10	ENSG00000241956.5	CTC-340A15.2	NA	NA	NA	inter
CUST_32158_PI429285431	4.3558135	P	3.9026537	A	1.36903544579477	0	lncRNA	33859-1_{1..504}	n338727|AF086147|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1147|NULL|-1.2425100|-0.3784474	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338727|AF086147|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1147|NULL|-1.2425100|-0.3784474	chr2	 28312739	 28313242	+	NA	NA	NA	NA	BRE	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80chr2:28302739-28323166"	NA	inner
CUST_43098_PI429285431	0.88746214	A	0.8838678	A	1.0024945127695	0	lncRNA	47506-1_{1..104}	ENST00000517257 ncrna:snRNA chromosome:GRCh37:10:115871173:115871276:1 gene:ENSG00000253066 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517257 ncrna:snRNA chromosome:GRCh37:10:115871173:115871276:1 gene:ENSG00000253066 gene_biotype:snRNA transcript_biotype:snRNA	chr10	115871173	115871276	+	ENSG00000253066	ENST00000517257	NA	NA	NA	NA	NA	inter
CUST_43505_PI429285431	0.89578706	A	0.898376	A	0.998207092720315	0	lncRNA	48295-1_{1..3000}	"gi|218749809|ref|NR_024604.1| Homo sapiens chloride channel accessory 3, pseudogene (CLCA3P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|218749809|ref|NR_024604.1| Homo sapiens chloride channel accessory 3, pseudogene (CLCA3P), non-coding RNA"	Chr1	 87099959	 87102958	+	9629	NR_024604.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001958	4.3712196	P	3.7917757	P	1.49427315635565	0	lncRNA	ENST00000440326	NA	NA	NA	NA	XLOC_001826	NA	ENST00000440326	THC2778533	NA	"BROAD Institute lincRNA (XLOC_001826), lincRNA [TCONS_00003087]"	chr2:208104866-208110058	hs|2q33.3	Agilent_HUMAN_G3V2	ENST00000440326	ENST00000440326	chr2	208104866	208110058	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4377_PI429285431	1.2742308	A	1.2104616	A	1.04519287857731	0	lncRNA	4331-1_{1..3000}	"transcript_id ""ENST00000504409.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000504409.3"" | genecode_v17"	chr12	 92860227	 92863226	+	ENSG00000205056.8	ENST00000504409.3	RP11-693J15.5	RP11-693J15.5-001	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.91;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.56;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.21;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_28790_PI429285431	0.89388746	A	0.89904267	A	0.996433057431033	0	lncRNA	30498-1_{1..619}	n326197|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091687|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091687|-1.2801600|-0.3145847	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326197|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091687|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091687|-1.2801600|-0.3145847	chr1	225764919	225765537	-	NA	NA	NA	NA	ENAH	NA	chr1:225754919-225784801	inner
CUST_33970_PI429285431	0.8947065	A	0.89325184	A	1.00100880197643	0	lncRNA	35507-2_{3001..3305}	n340778|AK128590|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3241|NULL|-0.4293790|-0.2362880	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340778|AK128590|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3241|NULL|-0.4293790|-0.2362880	chr5	179508356	179508660	-	NA	NA	NA	NA	RNF130	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90chr5:179495356-179499109"	NA	inter
CUST_49611_PI429285431	0.9108504	A	0.90080136	A	1.00698977900883	0	lncRNA	53401-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00025671 range=chr7:12565462-12585630 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025671 range=chr7:12565462-12585630 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 12565462	 12568461	+	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_25743_PI429285431	0.9143928	A	1.5974231	A	0.622855626209543	0	lncRNA	27269-1_{1..590}	lnc-AHNAK-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AHNAK-4:1	chr11	 62160353	 62160942	-	lnc-AHNAK-4	lnc-AHNAK-4:1	ENSG00000255126.1	CTD-2531D15.5	ASRGL1	"hg19_refFlat_ASRGL1:range=chr11:62105450-621597565'pad=0,hg19_refFlat_ASRGL1:range=chr11:62105450-621597565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40chr11:62150353-62160887"	NA	inner
CUST_18481_PI429285431	1.5207787	A	0.9012114	A	1.53641430344745	0	lncRNA	20201-1_{1..1294}	lnc-SPRYD7-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPRYD7-1:3	chr13	 50655959	 50657252	-	lnc-SPRYD7-1	lnc-SPRYD7-1:3	ENSG00000231607	DLEU2	NA	NA	NA	inter
CUST_6491_PI429285431	1.5027196	A	1.7400186	A	0.848332065810544	0	lncRNA	6433-1_{1..249}	"transcript_id ""ENST00000589968.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589968.1"" | genecode_v17"	chr19	 36870253	 36870501	-	ENSG00000267363.1	ENST00000589968.1	CTD-3162L10.4	CTD-3162L10.4-001	ZFP14	NA	chr19:36860253-36870105	inter
CUST_30534_PI429285431	10.736139	P	10.285765	P	1.36639443090018	0	lncRNA	32314-1_{1..313}	n335702|CR620428|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000299623|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000299623|-1.3178100|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335702|CR620428|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000299623|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000299623|-1.3178100|-1.0000000	chrX	 99193205	 99193517	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2864_PI429285431	0.9687769	A	1.1111927	A	0.906000781608321	0	lncRNA	2845-1_{1..575}	"transcript_id ""ENST00000420758.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420758.1"" | genecode_v17"	chr7	 67156045	 67156619	-	ENSG00000233423.1	ENST00000420758.1	RP4-736H5.3	RP4-736H5.3-001	NA	NA	NA	inter
CUST_30283_PI429285431	6.242801	P	5.9556875	P	1.22019650204557	0	lncRNA	32059-1_{1..403}	n335179|AY429520|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254608|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254608|1.2977600|-0.1363150	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335179|AY429520|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254608|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254608|1.2977600|-0.1363150	chr21	 42602045	 42602447	+	NA	NA	NA	NA	BACE2	NA	chr21:42592045-42623830	inner
CUST_22113_PI429285431	0.9022202	A	1.611732	A	0.611527041195692	0	lncRNA	23718-1_{1..695}	lnc-MYEF2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYEF2-2:1	chr15	 48493437	 48494131	-	lnc-MYEF2-2	lnc-MYEF2-2:1	ENSG00000259385.1	RP11-605F22.1	SLC12A1	"hg19_refFlat_CTXN2:range=chr15:48493498-484937435'pad=0,hg19_refFlat_CTXN2:range=chr15:48493498-484937435'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr15:48498498-48503881"	NA	inner
CUST_5422_PI429285431	3.0575876	P	3.352831	P	0.814934831499278	0	lncRNA	5356-1_{1..451}	"transcript_id ""ENST00000570118.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000570118.1"" | genecode_v17"	chr16	  9539867	  9540317	-	ENSG00000261075.1	ENST00000570118.1	RP11-243A14.3	RP11-243A14.3-001	NA	NA	NA	inter
CUST_24488_PI429285431	1.1589776	A	0.9154774	A	1.18386140982242	0	lncRNA	26040-1_{1..423}	lnc-POLR3E-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POLR3E-1:1	chr16	 22380136	 22380558	+	lnc-POLR3E-1	lnc-POLR3E-1:1	ENSG00000260635.1	RP11-21M24.3	CDR2	NA	chr16:22370136-22385938	inner
CUST_27550_PI429285431	1.2863197	A	1.1898447	A	1.06915794808104	0	lncRNA	29124-2_{3001..3789}	n324735|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319013|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319013|-1.0380500|-0.3331922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324735|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319013|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319013|-1.0380500|-0.3331922	chr22	 18724495	 18725283	+	NA	NA	NA	NA	LOC642643	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20chr22:18711495-18737841"	NA	inter
CUST_23732_PI429285431	0.9286156	A	0.9087183	A	1.0138873024211	0	lncRNA	25295-2_{3001..4641}	lnc-MSRA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-MSRA-1:1	chr8	 10294182	 10295822	+	lnc-MSRA-1	lnc-MSRA-1:1	ENSG00000261451.1	RP11-981G7.1	MSRA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_OVCH1:range=chr12:29580504-296506195'pad=0,hg19_refFlat_OVCH1:range=chr12:29580504-296506195'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60chr8:10281182-10286401"	NA	inter
CUST_12534_PI429285431	3.1654763	P	5.295778	P	0.228410091872125	0	lncRNA	14145-1_{1..241}	lnc-COL18A1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL18A1-2:1	chr21	 46773280	 46773520	+	lnc-COL18A1-2	lnc-COL18A1-2:1	XLOC_013983	linc-COL18A1-2	NA	NA	NA	inter
CUST_3870_PI429285431	0.92093563	A	1.4406691	A	0.697500680699984	0	lncRNA	3839-1_{1..643}	"transcript_id ""ENST00000524479.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524479.1"" | genecode_v17"	chr11	 17716600	 17717242	+	ENSG00000254586.1	ENST00000524479.1	RP11-358H18.3	RP11-358H18.3-002	NA	NA	NA	inter
CUST_33234_PI429285431	1.7875438	A	0.90987104	A	1.83740894851448	0	lncRNA	34821-2_{3001..3110}	n339934|BX648123|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2383|NULL|-0.8298580|-0.2147118	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339934|BX648123|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2383|NULL|-0.8298580|-0.2147118	chr10	   410894	   411003	+	NA	NA	NA	NA	DIP2C	"hg19_refFlat_DIP2A:range=chr21:47879045-479763425'pad=0,hg19_refFlat_DIP2A:range=chr21:47879045-479763425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_DIP2A:range=chr21:47879045-479698315'pad=0,hg19_refFlat_DIP2A:range=chr21:47879045-479698315'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_DIP2C:range=chr10:323265-7355185'pad=0,hg19_refFlat_DIP2C:range=chr10:323265-7355185'pad=0 3'pad=0 strand=- repeatMasking=none,-97.20;hg19_refFlat_DIP2A:range=chr21:47879045-479875355'pad=0,hg19_refFlat_DIP2A:range=chr21:47879045-479875355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70chr10:397894-420997"	NA	inner
CUST_42651_PI429285431	0.8971142	A	0.893914	A	1.00222067165427	0	lncRNA	45544-1_{1..132}	ENST00000364597 ncrna:snoRNA chromosome:GRCh37:X:17062503:17062634:-1 gene:ENSG00000201467 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364597 ncrna:snoRNA chromosome:GRCh37:X:17062503:17062634:-1 gene:ENSG00000201467 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	 17062503	 17062634	-	ENSG00000201467	ENST00000364597	NA	NA	REPS2	NA	chrX:17052503-17072634	inner
LNCA_21_P0004314	1.5575532	A	1.8682324	A	0.806262093303359	0	lncRNA	TCONS_00010140	NA	NA	NA	NA	XLOC_004603	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004603), lincRNA [TCONS_00010140]"	chr5:149821695-149821754	hs|5q33.1	Agilent_HUMAN_G3V2	TCONS_00010140	TCONS_00010140	chr5	149821695	149821754	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009164	0.9191165	A	1.8264018	A	0.533187439565727	0	lncRNA	ENST00000426489	NA	NA	NA	NA	XLOC_012160	NA	ENST00000426489	NA	NA	"BROAD Institute lincRNA (XLOC_012160), lincRNA [TCONS_00025164]"	chr17:27343471-27343530	hs|17q11.2	Agilent_HUMAN_G3V2	ENST00000426489	ENST00000426489	chr17	 27343471	 27343530	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5603_PI429285431	3.2959058	P	3.802348	P	0.703956310959063	0	lncRNA	5532-1_{1..530}	"transcript_id ""ENST00000567469.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567469.1"" | genecode_v17"	chr16	 71444343	 71444872	-	ENSG00000261348.1	ENST00000567469.1	RP11-510M2.1	RP11-510M2.1-001	NA	NA	NA	inter
CUST_31354_PI429285431	1.1374233	A	1.3098749	A	0.887333535975567	0	lncRNA	33136-1_{1..3000}	n337822|AL049291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|205|NULL|-0.9573070|-0.3814447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337822|AL049291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|205|NULL|-0.9573070|-0.3814447	chrX	107760345	107763344	+	NA	NA	NA	NA	COL4A5	NA	chrX:107750345-107774754	inner
CUST_37254_PI429285431	0.902895	A	1.1883004	A	0.820511011286784	0	lncRNA	38361-1_{1..688}	n345686|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1235|NULL|-1.3265600|-0.2333798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345686|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1235|NULL|-1.3265600|-0.2333798	chr1	 28568265	 28568952	-	NA	NA	NA	NA	DNAJC8	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-21.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40chr1:28558265-28559542"	NA	inter
CUST_21135_PI429285431	0.90111613	A	0.90216637	A	0.999272294011615	0	lncRNA	22760-1_{1..667}	lnc-NKAIN3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKAIN3-2:1	chr8	 63937807	 63938473	+	lnc-NKAIN3-2	lnc-NKAIN3-2:1	ENSG00000253121.1	RP11-659E9.4	GGH	NA	chr8:63927807-63947853	inner
CUST_41239_PI429285431	1.0739337	A	1.7513895	A	0.625266964200773	0	lncRNA	42162-1_{1..81}	ENST00000578683 ncrna:miRNA chromosome:GRCh37:10:132760851:132760931:-1 gene:ENSG00000264803 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578683 ncrna:miRNA chromosome:GRCh37:10:132760851:132760931:-1 gene:ENSG00000264803 gene_biotype:miRNA transcript_biotype:miRNA	chr10	132760851	132760931	-	ENSG00000264803	ENST00000578683	NA	NA	NA	NA	NA	inter
CUST_3472_PI429285431	1.1164502	A	1.5309595	A	0.750274640153215	0	lncRNA	3443-1_{1..755}	"transcript_id ""ENST00000436671.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436671.1"" | genecode_v17"	chr9	 93145892	 93146646	-	ENSG00000231107.1	ENST00000436671.1	RP11-389K14.3	RP11-389K14.3-002	NA	NA	NA	inter
CUST_41973_PI429285431	0.9077596	A	0.9089459	A	0.999178057479668	0	lncRNA	43788-1_{1..97}	ENST00000385077 ncrna:miRNA chromosome:GRCh37:X:133303701:133303797:-1 gene:ENSG00000207812 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385077 ncrna:miRNA chromosome:GRCh37:X:133303701:133303797:-1 gene:ENSG00000207812 gene_biotype:miRNA transcript_biotype:miRNA	chrX	133303701	133303797	-	ENSG00000207812	ENST00000385077	NA	NA	NA	NA	NA	inter
CUST_41823_PI429285431	8.763051	P	8.859732	P	0.935181956668941	0	lncRNA	43421-1_{1..92}	ENST00000408101 ncrna:miRNA chromosome:GRCh37:1:201777739:201777830:1 gene:ENSG00000221028 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408101 ncrna:miRNA chromosome:GRCh37:1:201777739:201777830:1 gene:ENSG00000221028 gene_biotype:miRNA transcript_biotype:miRNA	chr1	201777739	201777830	+	ENSG00000221028	ENST00000408101	NA	NA	NAV1	NA	chr1:201767739-201787830	inner
CUST_50715_PI429285431	6.5574317	P	6.4449224	P	1.08110698691802	0	lncRNA	54384-1_{1..1802}	hg19_lincRNAsTranscripts_TCONS_l2_00003696 range=chr10:89146179-89150497 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003696 range=chr10:89146179-89150497 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 89146179	 89147980	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50848_PI429285431	1.9677137	A	0.9761538	A	1.98833369552724	0	lncRNA	54493-1_{1..1335}	hg19_lincRNAsTranscripts_TCONS_l2_00004658 range=chr11:76092374-76115157 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004658 range=chr11:76092374-76115157 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 76092374	 76093708	+	NA	NA	NA	NA	PRKRIR	NA	chr11:76082374-76091880	inter
CUST_34733_PI429285431	7.166958	P	7.499967	P	0.793878978441425	0	lncRNA	36178-1_{1..1774}	n341640|BX648457|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4111|NULL|2.3178300|-0.1666732	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341640|BX648457|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4111|NULL|2.3178300|-0.1666732	chr8	145575881	145577654	-	NA	NA	NA	NA	FBXL6	NA	chr8:145579091-145582132	inter
CUST_1476_PI429285431	0.9126532	A	0.9162676	A	0.997497824503453	0	lncRNA	1463-1_{1..368}	"transcript_id ""ENST00000492307.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000492307.1"" | genecode_v17"	chr3	142830644	142831011	+	ENSG00000243733.1	ENST00000492307.1	RP11-80H8.3	RP11-80H8.3-001	CHST2	NA	chr3:142838668-142841201	inter
CUST_28938_PI429285431	7.4310164	P	7.6515255	P	0.858262518261044	0	lncRNA	30658-1_{1..433}	n326367|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098965|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098965|-0.9313210|-0.2763272	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326367|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098965|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098965|-0.9313210|-0.2763272	chr1	154948627	154949059	-	NA	NA	NA	NA	FLAD1	NA	chr1:154955770-154959590	inter
CUST_42643_PI429285431	0.90839887	A	1.1140609	A	0.867140678658295	0	lncRNA	45525-1_{1..114}	ENST00000516013 ncrna:snoRNA chromosome:GRCh37:12:60757603:60757716:1 gene:ENSG00000251822 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516013 ncrna:snoRNA chromosome:GRCh37:12:60757603:60757716:1 gene:ENSG00000251822 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 60757603	 60757716	+	ENSG00000251822	ENST00000516013	NA	NA	NA	NA	NA	inter
CUST_36653_PI429285431	1.3589303	A	1.0470006	A	1.24136700041475	0	lncRNA	37844-1_{1..2752}	n345149|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_698|NULL|-1.2772300|-0.3363690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345149|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_698|NULL|-1.2772300|-0.3363690	chr11	 86621168	 86623919	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3693_PI429285431	1.1059973	A	1.1805089	A	0.949663559071182	0	lncRNA	3661-1_{1..562}	"transcript_id ""ENST00000429104.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429104.1"" | genecode_v17"	chr10	 51732523	 51733084	+	ENSG00000178440.5	ENST00000429104.1	LINC00843	LINC00843-002	AGAP6	NA	chr10:51748078-51751130	inter
CUST_29527_PI429285431	1.3892276	A	1.9448589	A	0.680359278893886	0	lncRNA	31285-1_{1..401}	n332985|AF117255|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000070101|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000070101|1.1956400|-0.0518223	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332985|AF117255|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000070101|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000070101|1.1956400|-0.0518223	chr1	216850503	216850903	-	NA	NA	NA	NA	ESRRG	NA	chr1:216840503-216906657	inner
CUST_2727_PI429285431	3.549507	P	3.239706	P	1.23953671105255	0	lncRNA	2712-1_{1..694}	"transcript_id ""ENST00000427017.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427017.1"" | genecode_v17"	chr6	170209414	170210107	-	ENSG00000236173.1	ENST00000427017.1	RP1-182D15.2	RP1-182D15.2-001	NA	NA	NA	inter
CUST_6676_PI429285431	0.9103003	A	0.9220672	A	0.991876977942097	0	lncRNA	6624-1_{1..542}	"transcript_id ""ENST00000448580.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448580.1"" | genecode_v17"	chr20	 25989427	 25989968	-	ENSG00000231081.1	ENST00000448580.1	RP4-760C5.3	RP4-760C5.3-001	NA	NA	NA	inter
CUST_11910_PI429285431	1.9606454	A	1.5502346	A	1.32906420442478	0	lncRNA	13491-1_{1..1594}	lnc-LYRM7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYRM7-1:1	chr5	130591770	130593363	+	lnc-LYRM7-1	lnc-LYRM7-1:1	XLOC_004548	linc-CDC42SE2	CDC42SE2	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80chr5:130599702-130603138"	NA	inter
CUST_31134_PI429285431	9.314137	P	9.571524	P	0.836601795856905	0	lncRNA	32929-1_{1..380}	n337459|EF010934|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394705|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394705|0.7505840|-0.0227379	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337459|EF010934|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394705|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394705|0.7505840|-0.0227379	chr11	  2466238	  2466617	+	NA	NA	NA	NA	KCNQ1	NA	chr11:2466221-2476618	inner
CUST_39026_PI429285431	0.8953265	A	0.8991734	A	0.997337083978923	0	lncRNA	40006-1_{1..1014}	n385381|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xmw.2||1.0443700|-0.3298720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385381|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xmw.2||1.0443700|-0.3298720	chr8	 39172181	 39173194	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25935_PI429285431	0.89133507	A	1.4480772	A	0.679835625180585	0	lncRNA	27454-1_{1..678}	lnc-OSBPL9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OSBPL9-2:1	chr1	 51928826	 51929503	+	lnc-OSBPL9-2	lnc-OSBPL9-2:1	ENSG00000238140.1	RP11-253A20.1	EPS15	NA	chr1:51918826-51939088	inner
CUST_18077_PI429285431	0.9001353	A	0.9048996	A	0.996703085684703	0	lncRNA	19812-1_{1..1741}	lnc-CPEB4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CPEB4-4:1	chr5	173007232	173008972	+	lnc-CPEB4-4	lnc-CPEB4-4:1	XLOC_004642	linc-CPEB4-3	NA	NA	NA	inter
CUST_36018_PI429285431	5.414045	P	5.290177	P	1.08965240943883	0	lncRNA	37350-1_{1..1054}	n344628|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_176|NULL|-1.6872300|-0.2145047	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344628|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_176|NULL|-1.6872300|-0.2145047	chr2	162101351	162102404	+	NA	NA	NA	NA	TANK	NA	chr2:162091351-162092683	inter
CUST_19533_PI429285431	0.9223239	A	1.5247848	A	0.658629528866021	0	lncRNA	21189-1_{1..659}	lnc-PARP10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PARP10-1:1	chr8	145118603	145119261	-	lnc-PARP10-1	lnc-PARP10-1:1	ENSG00000178814.11	OPLAH	OPLAH	NA	chr8:145108603-145115584	inter
CUST_14688_PI429285431	2.020878	A	2.2873664	A	0.831340614430567	0	lncRNA	16357-1_{1..684}	lnc-CALML5-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CALML5-5:1	chr10	  5608499	  5609182	-	lnc-CALML5-5	lnc-CALML5-5:1	XLOC_008710	linc-CALML5-5	NA	NA	NA	inter
CUST_42547_PI429285431	3.5081313	P	3.1644783	P	1.26896563506808	0	lncRNA	45356-1_{1..99}	ENST00000459089 ncrna:snoRNA chromosome:GRCh37:5:122345237:122345335:-1 gene:ENSG00000239103 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459089 ncrna:snoRNA chromosome:GRCh37:5:122345237:122345335:-1 gene:ENSG00000239103 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	122345237	122345335	-	ENSG00000239103	ENST00000459089	NA	NA	SNX24	NA	chr5:122335237-122344902	inter
CUST_38168_PI429285431	1.305644	A	0.9008483	A	1.32390141948146	0	lncRNA	39239-1_{1..1164}	n381420|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ius.1||0.1817110|-0.3627136	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381420|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ius.1||0.1817110|-0.3627136	chr10	 29745064	 29746227	+	NA	NA	NA	NA	SVIL	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60chr10:29746277-29756228"	NA	inter
CUST_7217_PI429285431	2.052095	A	1.8269079	A	1.16892883458433	0	lncRNA	7689-1_{1..244}	"transcript_id ""ENST00000516142.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516142.1"" | genecode_v17"	chr5	 86398420	 86398663	-	ENSG00000251951.1	ENST00000516142.1	RN7SKP34	RN7SKP34-201	NA	NA	NA	inter
LNCA_21_P0014118	0.91849965	A	0.9188571	A	0.999752265231636	0	lncRNA	XR_108490	XR_108490	XR_108490	NA	NA	LOC100507224	uncharacterized LOC100507224	NA	THC2650417	NA	"PREDICTED: Homo sapiens hypothetical LOC100507224 (LOC100507224), miscRNA [XR_108490]"	chr3:134183385-134183444	hs|3q22.2	Agilent_HUMAN_G3V2	XR_108490	XR_108490	chr3	134183385	134183444	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11471_PI429285431	0.89627457	A	1.0962653	A	0.870556157014422	0	lncRNA	13037-1_{1..798}	lnc-RP11-1407O15.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-1407O15.2.1-1:1	chr17	 36451459	 36452256	-	lnc-RP11-1407O15.2.1-1	lnc-RP11-1407O15.2.1-1:1	XLOC_012456	linc-TBC1D3F-1	MRPL45	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr17:36452989-36462228"	NA	inter
CUST_23341_PI429285431	1.0302105	A	1.1471331	A	0.92215258969554	0	lncRNA	24910-1_{1..438}	lnc-STARD4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STARD4-2:1	chr5	110605673	110606110	-	lnc-STARD4-2	lnc-STARD4-2:1	ENSG00000249318.1	AC010468.2	CAMK4	NA	chr5:110595673-110615787	inner
CUST_49070_PI429285431	3.9495254	P	4.002059	P	0.964241481051971	0	lncRNA	52895-1_{1..1209}	hg19_lincRNAsTranscripts_TCONS_l2_00021819 range=chr4:3944494-3957121 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021819 range=chr4:3944494-3957121 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  3944494	  3945702	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18642_PI429285431	7.9653354	P	8.147165	P	0.881584277686805	0	lncRNA	20346-1_{1..438}	lnc-GNAT1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNAT1-1:10	chr3	 50256025	 50256462	+	lnc-GNAT1-1	lnc-GNAT1-1:10	ENSG00000188338	SLC38A3	SLC38A3	NA	chr3:50246025-50258406	inner
CUST_23639_PI429285431	4.2242594	P	3.8789983	P	1.27038087619188	0	lncRNA	25204-1_{1..2339}	lnc-RBM4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBM4-1:1	chr11	 66433507	 66435845	+	lnc-RBM4-1	lnc-RBM4-1:1	ENSG00000258297.1	RP11-658F2.8	RBM4	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90chr11:66423507-66435856"	NA	inner
CUST_39492_PI429285431	0.9149728	A	0.91282606	A	1.0014891144098	0	lncRNA	40439-1_{1..224}	n387208|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011adf.1||0.7814820|-0.1701686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387208|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011adf.1||0.7814820|-0.1701686	chr21	 31992945	 31993168	+	NA	NA	NA	NA	KRTAP20-1	NA	chr21:31988774-31988944	inter
CUST_36416_PI429285431	1.4222302	A	0.9194766	A	1.41691537878779	0	lncRNA	37634-1_{1..992}	n344933|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_482|NULL|-1.3088100|-0.1003538	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344933|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_482|NULL|-1.3088100|-0.1003538	chr6	167315612	167316603	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38064_PI429285431	6.341621	P	6.375345	P	0.976895399599249	0	lncRNA	39142-1_{1..1029}	n377637|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030035||-0.8102570|-0.1669259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377637|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030035||-0.8102570|-0.1669259	chr7	    83302	    84330	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34852_PI429285431	3.8219628	P	3.7765489	P	1.03197920508326	0	lncRNA	36278-1_{1..609}	n341758|AF085953|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4232|NULL|-0.3939300|-0.4064298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341758|AF085953|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4232|NULL|-0.3939300|-0.4064298	chr9	114991481	114992089	-	NA	NA	NA	NA	ROD1	NA	chr9:114981481-115002595	inner
CUST_38464_PI429285431	1.9432867	A	2.4417052	A	0.707882345327292	0	lncRNA	39483-2_{3001..3552}	n382921|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dax.1||10.6922000|-0.1101593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n382921|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dax.1||10.6922000|-0.1101593	chr16	 11539046	 11539597	-	NA	NA	NA	NA	LOC400499	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-61.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-56.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40chr16:11536047-11585611"	NA	inter
CUST_29951_PI429285431	0.90627706	A	1.1966987	A	0.817663054593029	0	lncRNA	31717-1_{1..276}	n334157|M96670|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196929|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196929|-0.4820510|-0.1039567	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334157|M96670|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196929|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196929|-0.4820510|-0.1039567	chr5	  1422017	  1422292	+	NA	NA	NA	NA	SLC6A3	"hg19_refFlat_SLC6A3:range=chr5:1394850-14433125'pad=0,hg19_refFlat_SLC6A3:range=chr5:1394850-14433125'pad=0 3'pad=0 strand=- repeatMasking=none,-101.10chr5:1412017-1442743"	NA	inner
CUST_14652_PI429285431	1.0415666	A	1.0740564	A	0.977731473846303	0	lncRNA	16321-1_{1..231}	lnc-FANCM-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FANCM-5:2	chr14	 46241613	 46241843	+	lnc-FANCM-5	lnc-FANCM-5:2	XLOC_010816	linc-PPIL5-2	NA	NA	NA	inter
LNCA_21_P0008621	1.4113116	A	0.90372	A	1.42167490402677	0	lncRNA	TCONS_00023370	NA	NA	NA	NA	XLOC_011219	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011219), lincRNA [TCONS_00023370]"	chr15:40350194-40350253	hs|15q15.1	Agilent_HUMAN_G3V2	TCONS_00023370	TCONS_00023370	chr15	 40350194	 40350253	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37491_PI429285431	1.0835882	A	0.90629375	A	1.13076132878162	0	lncRNA	38592-1_{1..806}	n345952|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1501|NULL|-1.2999800|-0.2267142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345952|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1501|NULL|-1.2999800|-0.2267142	chr3	150088072	150088877	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37209_PI429285431	0.90847975	A	0.9128869	A	0.99694985756818	0	lncRNA	38322-1_{1..768}	n345645|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1194|NULL|-1.7559000|-0.3360418	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345645|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1194|NULL|-1.7559000|-0.3360418	chr4	 90412118	 90412885	+	NA	NA	NA	NA	NA	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90"	NA	inter
CUST_43218_PI429285431	1.512482	A	1.693799	A	0.881897566621147	0	lncRNA	48032-1_{1..355}	ENST00000602741 havana:sense_intronic chromosome:GRCh37:12:124454537:124454891:-1 gene:ENSG00000270061 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602741 havana:sense_intronic chromosome:GRCh37:12:124454537:124454891:-1 gene:ENSG00000270061 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr12	124454537	124454891	-	ENSG00000270061	ENST00000602741	NA	NA	ZNF664-FAM101A	NA	chr12:124457762-124464891	inner
CUST_49171_PI429285431	0.9058091	A	0.90509987	A	1.00049172163033	0	lncRNA	52996-2_{3001..3068}	hg19_lincRNAsTranscripts_TCONS_l2_00021316 range=chr4:141363416-141420653 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021316 range=chr4:141363416-141420653 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	141366416	141366483	-	NA	NA	NA	NA	LOC152586	NA	chr4:141364529-141419501	inter
CUST_32185_PI429285431	1.5541551	A	0.9027961	A	1.57064702827474	0	lncRNA	33883-1_{1..2483}	n338757|AK098382|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1178|NULL|-1.1961700|-0.3460075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338757|AK098382|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1178|NULL|-1.1961700|-0.3460075	chr13	 67656644	 67659126	-	NA	NA	NA	NA	PCDH9	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chr13:67646644-67668943"	NA	inner
CUST_19841_PI429285431	0.9175612	A	1.5972886	A	0.624283222821632	0	lncRNA	21498-1_{1..619}	lnc-EIF3A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF3A-1:1	chr10	120790254	120790872	-	lnc-EIF3A-1	lnc-EIF3A-1:1	ENSG00000230139.1	RP11-498J9.4	EIF3A	"hg19_refFlat_NANOS1:range=chr10:120789314-1207901925'pad=0,hg19_refFlat_NANOS1:range=chr10:120789314-1207901925'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.00chr10:120794541-120800661"	NA	inner
CUST_45582_PI429285431	0.89525086	A	0.89424	A	1.00070092028884	0	lncRNA	49975-2_{3001..3679}	"gi|387762522|ref|NR_048574.1| Homo sapiens glutamate dehydrogenase 1 pseudogene 7 (GLUD1P7), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387762522|ref|NR_048574.1| Homo sapiens glutamate dehydrogenase 1 pseudogene 7 (GLUD1P7), non-coding RNA"	Chr10	 46767668	 46768346	+	414212	NR_048574.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00"	NA	inter
LNCA_21_P0008633	0.9033545	A	0.8971917	A	1.00428086427742	0	lncRNA	TCONS_00023411	NA	NA	NA	NA	XLOC_011257	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011257), lincRNA [TCONS_00023411]"	chr15:53087490-53087549	hs|15q21.3	Agilent_HUMAN_G3V2	TCONS_00023411	TCONS_00023411	chr15	 53087490	 53087549	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24325_PI429285431	1.4956923	A	2.534984	A	0.486566297790575	0	lncRNA	25878-1_{1..517}	lnc-SEZ6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEZ6-1:1	chr17	 27337992	 27338508	-	lnc-SEZ6-1	lnc-SEZ6-1:1	ENSG00000263613.1	RP11-321A17.5	SEZ6	NA	chr17:27327992-27333081	inter
CUST_35945_PI429285431	3.2029018	P	3.7180603	P	0.699716055090227	0	lncRNA	37306-2_{3001..3834}	n344581|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_129|NULL|-1.4169800|-0.3011090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344581|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_129|NULL|-1.4169800|-0.3011090	chr6	 14289249	 14290082	-	NA	NA	NA	NA	NA	"hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_5235_PI429285431	3.0292144	P	2.9587176	P	1.050078221602	0	lncRNA	5176-1_{1..2325}	"transcript_id ""ENST00000565181.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565181.1"" | genecode_v17"	chr15	 72765185	 72767509	-	ENSG00000261423.1	ENST00000565181.1	RP11-1007O24.3	RP11-1007O24.3-001	ARIH1	"hg19_refFlat_ARIH1:range=chr15:72766981-728756335'pad=0,hg19_refFlat_ARIH1:range=chr15:72766981-728756335'pad=0 3'pad=0 strand=+ repeatMasking=none,-111.70chr15:72766667-72777509"	NA	inner
CUST_51166_PI429285431	0.8883262	A	0.8856277	A	1.00187220806386	0	lncRNA	54788-1_{1..735}	hg19_lincRNAsTranscripts_TCONS_l2_00007751 range=chr14:60385935-60394696 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007751 range=chr14:60385935-60394696 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 60385935	 60386669	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5008_PI429285431	5.0077367	P	4.910015	P	1.07008225658755	0	lncRNA	4949-1_{1..2853}	"transcript_id ""ENST00000524035.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524035.1"" | genecode_v17"	chr14	101300101	101302953	+	ENSG00000214548.9	ENST00000524035.1	MEG3	MEG3-018	NA	NA	NA	inter
CUST_3051_PI429285431	1.000116	A	1.259331	A	0.835542431558792	0	lncRNA	3030-1_{1..938}	"transcript_id ""ENST00000518623.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518623.1"" | genecode_v17"	chr8	 29531438	 29532375	-	ENSG00000251191.3	ENST00000518623.1	LINC00589	LINC00589-002	NA	NA	NA	inter
CUST_46225_PI429285431	6.4873586	P	5.0826592	P	2.64762610382745	0	lncRNA	50465-1_{1..1432}	"gi|315259088|ref|NR_036571.2| Homo sapiens asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast) (ALG11), transcript variant B, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315259088|ref|NR_036571.2| Homo sapiens asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast) (ALG11), transcript variant B, non-coding RNA"	NA	NA	NA	NA	NA	NR_036571.2	NA	NA	NA	NA	NA	Unknown
CUST_32217_PI429285431	3.2808766	P	4.1483035	P	0.548123578044369	0	lncRNA	33910-1_{1..475}	n338791|D87947|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1213|NULL|1.8527400|-0.1216492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338791|D87947|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1213|NULL|1.8527400|-0.1216492	chr19	 49141327	 49141801	+	NA	NA	NA	NA	NTN5	NA	chr19:49164664-49176264	inter
CUST_24580_PI429285431	4.176195	P	4.237621	P	0.958316424367156	0	lncRNA	26129-1_{1..258}	lnc-TMEM99-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM99-2:1	chr17	 39019338	 39019595	+	lnc-TMEM99-2	lnc-TMEM99-2:1	ENSG00000265359.1	RP5-1110E20.1	KRT12	"hg19_refFlat_KRT12:range=chr17:39017913-390234385'pad=0,hg19_refFlat_KRT12:range=chr17:39017913-390234385'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50chr17:39017430-39023462"	NA	inner
CUST_44291_PI429285431	0.90340674	A	0.9094125	A	0.995845777144611	0	lncRNA	48924-1_{1..2141}	"gi|254750633|ref|NR_028135.1| Homo sapiens potassium large conductance calcium-activated channel, subfamily M beta member 3 (KCNMB3), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254750633|ref|NR_028135.1| Homo sapiens potassium large conductance calcium-activated channel, subfamily M beta member 3 (KCNMB3), transcript variant 6, non-coding RNA"	Chr3	178957537	178959677	-	27094	NR_028135.1	NA	NA	NA	NA	NA	inter
CUST_25274_PI429285431	0.90354854	A	0.8997629	A	1.00262745140875	0	lncRNA	26804-1_{1..482}	lnc-NNT-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NNT-3:2	chr5	 43509306	 43509787	+	lnc-NNT-3	lnc-NNT-3:2	ENSG00000249492.1	RP11-159F24.3	PAIP1	"hg19_refFlat_C5orf34:range=chr5:43487017-435094415'pad=0,hg19_refFlat_C5orf34:range=chr5:43487017-435094415'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10chr5:43499306-43519458"	NA	inner
CUST_46063_PI429285431	5.387309	P	5.44448	P	0.961146998644144	0	lncRNA	50338-1_{1..3000}	"gi|302191713|ref|NR_036478.1| Homo sapiens transmembrane protein 198B, pseudogene (TMEM198B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302191713|ref|NR_036478.1| Homo sapiens transmembrane protein 198B, pseudogene (TMEM198B), transcript variant 3, non-coding RNA"	Chr12	 56223392	 56226391	+	440104	NR_036478.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20"	NA	inter
CUST_31780_PI429285431	0.89515084	A	0.89329344	A	1.00128828069473	0	lncRNA	33520-1_{1..2505}	n338322|CR612459|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|716|NULL|-0.3424410|-0.2799172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338322|CR612459|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|716|NULL|-0.3424410|-0.2799172	chr14	 60139385	 60141889	-	NA	NA	NA	NA	RTN1	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10chr14:60129385-60151890"	NA	inner
CUST_34036_PI429285431	1.2593921	A	1.4757133	A	0.860757528916911	0	lncRNA	35568-1_{1..656}	n340853|CR590738|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3317|NULL|0.0759121|-0.1642940	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340853|CR590738|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3317|NULL|0.0759121|-0.1642940	chr17	 73556194	 73556849	+	NA	NA	NA	NA	LLGL2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50chr17:73546194-73566850"	NA	inner
CUST_38123_PI429285431	1.2995859	A	0.884706	A	1.3331876886275	0	lncRNA	39196-1_{1..896}	n381236|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001elu.1||-0.9569950|-0.3056166	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381236|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001elu.1||-0.9569950|-0.3056166	chr1	144833912	144834807	-	NA	NA	NA	NA	NBPF9	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0,hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50chr1:144823912-144828810"	NA	inter
LNCA_21_P0005680	8.587446	P	8.895598	P	0.807675677732633	0	lncRNA	TCONS_00014665	NA	NA	NA	NA	XLOC_006764	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006764), lincRNA [TCONS_00014665]"	chr8:31133293-31179420	hs|8p12	Agilent_HUMAN_G3V2	TCONS_00014665	TCONS_00014665	chr8	 31133293	 31179420	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40268_PI429285431	8.223417	P	7.7857003	P	1.35445897816104	0	lncRNA	41078-1_{1..970}	n408209|NR_028352|lncRNA|Homosapiens||RefGeneNoncode|NR_028352||1.9557200|-0.3603595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408209|NR_028352|lncRNA|Homosapiens||RefGeneNoncode|NR_028352||1.9557200|-0.3603595	chr21	 38437663	 38438632	-	NA	NA	NA	NA	TTC3	NA	chr21:38445571-38455458	inner
LNCA_21_P0006637	0.9039726	A	0.89605415	A	1.00550374153413	0	lncRNA	ENST00000421821	NA	NA	NA	NA	XLOC_008346	NA	ENST00000421821	NA	NA	"BROAD Institute lincRNA (XLOC_008346), lincRNA [TCONS_00017765]"	chr10:3248666-3248725	hs|10p15.2	Agilent_HUMAN_G3V2	ENST00000421821	ENST00000421821	chr10	  3248666	  3248725	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12272_PI429285431	0.8954301	A	1.1369951	A	0.845827281948867	0	lncRNA	13881-1_{1..558}	lnc-PHTF2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHTF2-1:3	chr7	 77624189	 77624746	+	lnc-PHTF2-1	lnc-PHTF2-1:3	XLOC_006154	linc-GNAI1-2	NA	NA	NA	inter
LNCA_21_P0014112	1.0649824	A	1.1891719	A	0.917519356952407	0	lncRNA	ENST00000477009	XR_108472	XR_108472	NA	Hs.660823	LOC100506765	NA	ENST00000477009	THC2605954	NA	"PREDICTED: Homo sapiens hypothetical LOC100506765 (LOC100506765), miscRNA [XR_108472]"	chr3:118666241-118666300	hs|3q13.32	Agilent_HUMAN_G3V2	ENST00000477009	ENST00000477009	chr3	118666241	118666300	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9506_PI429285431	0.8968973	A	1.0339245	A	0.909391106339933	0	lncRNA	11016-1_{1..778}	lnc-ETAA1-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ETAA1-4:6	chr2	 67831291	 67832068	+	lnc-ETAA1-4	lnc-ETAA1-4:6	XLOC_001515	linc-PNO1-1	NA	NA	NA	inter
CUST_9004_PI429285431	0.9269941	A	2.7488623	A	0.282854455208591	0	lncRNA	10532-1_{1..704}	lnc-PDHX-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PDHX-1:1	chr11	 35235151	 35235854	+	lnc-PDHX-1	lnc-PDHX-1:1	ENSG00000251194	ENSG00000251194.2	CD44	NA	chr11:35225151-35245554	inner
CUST_31343_PI429285431	1.422667	A	0.89530164	A	1.44129470799148	0	lncRNA	33125-1_{1..1533}	n337811|BC042538|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|194|NULL|-0.9868570|-0.2383273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n337811|BC042538|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|194|NULL|-0.9868570|-0.2383273	chr1	 30486798	 30488330	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29152_PI429285431	1.2398064	A	0.9108466	A	1.25610737983087	0	lncRNA	30895-1_{1..2148}	n326663|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000011215|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000011215|-0.2694160|-0.2403603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326663|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000011215|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000011215|-0.2694160|-0.2403603	chr1	 29528718	 29530865	-	NA	NA	NA	NA	MECR	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20chr1:29519385-29557454"	NA	inner
LNCA_21_P0003021	0.914643	A	0.9053609	A	1.00645460319053	0	lncRNA	TCONS_00006188	NA	NA	NA	NA	XLOC_002788	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002788), lincRNA [TCONS_00006188]"	chr3:122999330-122999389	hs|3q21.1	Agilent_HUMAN_G3V2	TCONS_00006188	TCONS_00006188	chr3	122999330	122999389	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010945	0.9150891	A	0.90571994	A	1.00651533992221	0	lncRNA	ENST00000421313	NA	NA	NA	NA	XLOC_l2_001954	NA	ENST00000421313	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001954), lincRNA [TCONS_l2_00004170]"	chr10:46780549-46780490	hs|10q11.22	Agilent_HUMAN_G3V2	ENST00000421313	ENST00000421313	chr10	 46780490	 46780549	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2677_PI429285431	6.014795	P	5.689668	P	1.25277471514249	0	lncRNA	2663-1_{1..446}	"transcript_id ""ENST00000604082.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604082.1"" | genecode_v17"	chr6	157095351	157095796	-	ENSG00000271265.1	ENST00000604082.1	RP11-230C9.4	RP11-230C9.4-001	ARID1B	NA	chr6:157099064-157105796	inter
CUST_24815_PI429285431	0.9177015	A	1.0229273	A	0.929659427780824	0	lncRNA	26355-1_{1..407}	lnc-OST4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OST4-1:1	chr2	 27273048	 27273454	-	lnc-OST4-1	lnc-OST4-1:1	ENSG00000231636.1	AGBL5-AS1	TMEM214	NA	chr2:27263048-27264565	inter
CUST_9180_PI429285431	0.894562	A	1.0580368	A	0.892871954224994	0	lncRNA	10695-1_{1..2604}	lnc-KLRG1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KLRG1-2:1	chr12	  9393714	  9396317	+	lnc-KLRG1-2	lnc-KLRG1-2:1	ENSG00000237248	ENST00000427111	NA	"hg19_refFlat_PTMA:range=chr2:232573417-2325775615'pad=0,hg19_refFlat_PTMA:range=chr2:232573417-2325775615'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80"	NA	inter
CUST_34133_PI429285431	6.86329	P	6.7555203	P	1.0775611182973	0	lncRNA	35654-1_{1..2482}	n340973|AK025363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3439|NULL|0.1790200|-0.2748716	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340973|AK025363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3439|NULL|0.1790200|-0.2748716	chr11	 12442787	 12445268	+	NA	NA	NA	NA	PARVA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-62.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90chr11:12432787-12455108"	NA	inner
CUST_30271_PI429285431	3.5850263	P	2.587282	A	1.99687537916865	0	lncRNA	32046-1_{1..413}	n335158|AY316523|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251697|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251697|2.7587700|-0.4115377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335158|AY316523|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251697|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251697|2.7587700|-0.4115377	chr14	 32563311	 32563723	+	NA	NA	NA	NA	ARHGAP5	NA	chr14:32553311-32596481	inner
LNCA_21_P0005410	4.5561867	P	3.1076996	P	2.72921698518353	0	lncRNA	TCONS_00013555	NA	NA	NA	NA	XLOC_006188	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006188), lincRNA [TCONS_00013555]"	chr7:99606436-99606495	hs|7q22.1	Agilent_HUMAN_G3V2	TCONS_00013555	TCONS_00013555	chr7	 99606436	 99606495	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38688_PI429285431	1.1066486	A	1.2489328	A	0.906083429110117	0	lncRNA	39685-2_{3001..5427}	n384081|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zom.1||0.9320830|-0.1502992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384081|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zom.1||0.9320830|-0.1502992	chr22	 18961026	 18963452	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80"	NA	inter
CUST_41674_PI429285431	0.9129199	A	0.9272069	A	0.990145879410818	0	lncRNA	43116-1_{1..87}	ENST00000385281 ncrna:miRNA chromosome:GRCh37:19:54201639:54201725:1 gene:ENSG00000208016 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385281 ncrna:miRNA chromosome:GRCh37:19:54201639:54201725:1 gene:ENSG00000208016 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54201639	 54201725	+	ENSG00000208016	ENST00000385281	NA	NA	NA	NA	NA	inter
LNCA_21_P0007999	0.9197089	A	0.9089104	A	1.00751303208729	0	lncRNA	BC037867	NA	BC037867	NA	Hs.552684	XLOC_010635	NA	ENST00000432697	THC2609386	NA	"BROAD Institute lincRNA (XLOC_010635), lincRNA [TCONS_00022036]"	chr13:62578364-62578305	hs|13q21.31	Agilent_HUMAN_G3V2	BC037867	BC037867	chr13	 62578305	 62578364	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18106_PI429285431	0.89190483	A	0.8878646	A	1.00280439902381	0	lncRNA	19840-1_{1..748}	lnc-DTNBP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DTNBP1-1:1	chr6	 15682235	 15682982	-	lnc-DTNBP1-1	lnc-DTNBP1-1:1	XLOC_005620	linc-DTNBP1-2	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.90"	NA	inter
CUST_25471_PI429285431	0.9139126	A	0.9139711	A	0.999959451712041	0	lncRNA	27001-1_{1..477}	lnc-KIAA1009-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-KIAA1009-1:2	chr6	 85184545	 85185021	-	lnc-KIAA1009-1	lnc-KIAA1009-1:2	ENSG00000231776.1	RP1-90L14.1	NA	NA	NA	inter
CUST_34599_PI429285431	1.2134922	A	0.906754	A	1.23690800165716	0	lncRNA	36056-1_{1..3000}	n341482|CR749549|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3952|NULL|-1.1266400|-0.3093562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341482|CR749549|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3952|NULL|-1.1266400|-0.3093562	chr8	 34086512	 34089511	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31021_PI429285431	4.1597686	P	4.8456974	P	0.621605511219438	0	lncRNA	32810-1_{1..344}	n337226|BC113910|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000387214|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000387214|-1.2475200|-0.3114257	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337226|BC113910|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000387214|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000387214|-1.2475200|-0.3114257	chr7	  6631308	  6631651	-	NA	NA	NA	NA	C7orf26	"hg19_refFlat_C7orf26:range=chr7:6629915-66477925'pad=0,hg19_refFlat_C7orf26:range=chr7:6629915-66477925'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90chr7:6629915-6644220"	NA	inner
CUST_8629_PI429285431	2.5430515	A	1.3588797	A	2.27232910851527	0	lncRNA	10181-1_{1..496}	lnc-NBAS-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NBAS-4:5	chr2	 16081096	 16081591	-	lnc-NBAS-4	lnc-NBAS-4:5	ENSG00000233718	MYCNOS	MYCN	NA	chr2:16080683-16087129	inner
CUST_39083_PI429285431	0.9116422	A	0.90813434	A	1.00243442167288	0	lncRNA	40059-1_{1..1692}	n385612|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004apb.1||2.6198300|-0.3503809	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385612|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004apb.1||2.6198300|-0.3503809	chr9	 89834787	 89836478	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31459_PI429285431	3.1223192	P	2.4973261	A	1.54220344946989	0	lncRNA	33225-1_{1..245}	n337932|U84528|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|317|NULL|-1.2429100|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337932|U84528|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|317|NULL|-1.2429100|-1.0000000	chr22	 18980091	 18980335	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39168_PI429285431	1.6032238	A	0.89868456	A	1.62962412130487	0	lncRNA	40145-1_{1..427}	n385870|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004frl.1||2.0687100|-0.2775326	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385870|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004frl.1||2.0687100|-0.2775326	chrY	  9154669	  9155095	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11085_PI429285431	2.219373	A	2.407323	A	0.877852221121918	0	lncRNA	12638-1_{1..1791}	lnc-SOD2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOD2-2:3	chr6	160015135	160016925	-	lnc-SOD2-2	lnc-SOD2-2:3	XLOC_005900	linc-TAGAP-1	NA	NA	NA	inter
LNCA_21_P0006265	5.4804435	P	5.6425996	P	0.893688459788248	0	lncRNA	TCONS_00016770	NA	NA	NA	NA	XLOC_007686	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007686), lincRNA [TCONS_00016770]"	chr9:38071461-38071402	hs|9p13.2	Agilent_HUMAN_G3V2	TCONS_00016770	TCONS_00016770	chr9	 38071402	 38071461	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30793_PI429285431	1.401351	A	1.8954958	A	0.709982416385015	0	lncRNA	32580-1_{1..403}	n336681|Z69025|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327662|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327662|1.8248600|-0.2090756	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336681|Z69025|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327662|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327662|1.8248600|-0.2090756	chr2	 89475773	 89476175	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24251_PI429285431	2.987003	A	3.5407891	A	0.68123001184353	0	lncRNA	25802-1_{1..254}	lnc-VRK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VRK1-1:1	chr14	 97409854	 97410107	+	lnc-VRK1-1	lnc-VRK1-1:1	ENSG00000258825.1	AL133168.3	NA	NA	NA	inter
CUST_18093_PI429285431	0.8973394	A	0.9002407	A	0.997990992846849	0	lncRNA	19828-1_{1..3000}	lnc-UNC5CL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UNC5CL-1:1	chr6	 40965877	 40968876	-	lnc-UNC5CL-1	lnc-UNC5CL-1:1	XLOC_005715	linc-LRFN2-1	NA	NA	NA	inter
CUST_24055_PI429285431	8.053894	P	8.179407	P	0.916678028743425	0	lncRNA	25607-1_{1..736}	lnc-KDM6A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KDM6A-1:3	chrX	 45184738	 45185473	+	lnc-KDM6A-1	lnc-KDM6A-1:3	ENSG00000229491.1	RP11-342D14.1	NA	NA	NA	inter
CUST_7435_PI429285431	1.5435004	A	0.9166013	A	1.54424226034139	0	lncRNA	9078-1_{1..818}	lnc-AP3S1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AP3S1-1:1	chr5	115152263	115153080	+	lnc-AP3S1-1	lnc-AP3S1-1:1	ENSG00000248017	AC026449.1	CDO1	NA	chr5:115142263-115152405	inner
CUST_43426_PI429285431	5.600631	P	5.6380196	P	0.974417129470587	0	lncRNA	48236-1_{1..3000}	"gi|400154073|ref|NR_073092.1| Homo sapiens MYST/Esa1-associated factor 6 (MEAF6), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|400154073|ref|NR_073092.1| Homo sapiens MYST/Esa1-associated factor 6 (MEAF6), transcript variant 6, non-coding RNA"	Chr1	 37955561	 37958560	-	64769	NR_073092.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	inter
LNCA_21_P0001463	0.91937244	A	0.92389965	A	0.996866895600314	0	lncRNA	THC2604514	NA	NA	NA	NA	XLOC_000695	NA	NA	THC2604514	NA	"BROAD Institute lincRNA (XLOC_000695), lincRNA [TCONS_00001384]"	chr1:008063189-008063130	hs|1p36.23	Agilent_HUMAN_G3V2	THC2604514	THC2604514	chr1	  8063130	  8063189	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52201_PI429285431	3.1406236	A	4.357479	P	0.430219433643854	0	lncRNA	55717-1_{1..954}	hg19_lincRNAsTranscripts_TCONS_l2_00017736 range=chr22:32426317-32433930 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017736 range=chr22:32426317-32433930 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 32426317	 32427270	+	NA	NA	NA	NA	SLC5A1	NA	chr22:32439019-32443930	inter
CUST_42113_PI429285431	5.505232	P	5.709922	P	0.867725120099757	0	lncRNA	44077-1_{1..74}	ENST00000581137 ncrna:miRNA chromosome:GRCh37:X:1410648:1410721:1 gene:ENSG00000264510 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581137 ncrna:miRNA chromosome:GRCh37:X:1410648:1410721:1 gene:ENSG00000264510 gene_biotype:miRNA transcript_biotype:miRNA	chrX	  1410648	  1410721	+	ENSG00000264510	ENST00000581137	NA	NA	CSF2RA	NA	chrX:1400648-1420721	inner
CUST_31405_PI429285431	4.9458704	P	5.033294	P	0.941202070900666	0	lncRNA	33179-2_{3001..3775}	n337871|D16473|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|254|NULL|-1.1467200|-0.3350422	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337871|D16473|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|254|NULL|-1.1467200|-0.3350422	chrX	137826302	137827076	-	NA	NA	NA	NA	FGF13	NA	chrX:137813302-137836931	inner
CUST_45181_PI429285431	1.1834384	A	0.8998804	A	1.21719304881527	0	lncRNA	49653-1_{1..2642}	"gi|197304793|ref|NR_024107.1| Homo sapiens ADAM metallopeptidase domain 3A (pseudogene) (ADAM3A), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|197304793|ref|NR_024107.1| Homo sapiens ADAM metallopeptidase domain 3A (pseudogene) (ADAM3A), transcript variant 1, non-coding RNA"	Chr8	 39308564	 39311205	-	1587	NR_024107.2	NA	NA	NA	NA	NA	inter
CUST_41353_PI429285431	15.36258	P	15.643752	P	0.822922229559685	0	lncRNA	42425-1_{1..91}	ENST00000401179 ncrna:miRNA chromosome:GRCh37:19:54485561:54485651:1 gene:ENSG00000215998 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401179 ncrna:miRNA chromosome:GRCh37:19:54485561:54485651:1 gene:ENSG00000215998 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54485561	 54485651	+	ENSG00000215998	ENST00000401179	NA	NA	CACNG6	NA	chr19:54495542-54495651	inner
LNCA_21_P0007191	0.91872704	A	0.9196564	A	0.999356024177768	0	lncRNA	TCONS_00019270	NA	NA	NA	NA	XLOC_009100	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009100), lincRNA [TCONS_00019270]"	chr11:30814402-30814461	hs|11p14.1	Agilent_HUMAN_G3V2	TCONS_00019270	TCONS_00019270	chr11	 30814402	 30814461	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13212_PI429285431	0.9142796	A	0.9203447	A	0.995804817502095	0	lncRNA	14840-1_{1..1015}	lnc-RP11-785H20.1.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-785H20.1.1-1:4	chr8	123005837	123006851	+	lnc-RP11-785H20.1.1-1	lnc-RP11-785H20.1.1-1:4	XLOC_006911	linc-ZHX2-1	NA	NA	NA	inter
CUST_15847_PI429285431	1.1585618	A	0.9154339	A	1.18355594350737	0	lncRNA	17541-1_{1..256}	lnc-GRHL2-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRHL2-7:3	chr8	102151860	102152115	+	lnc-GRHL2-7	lnc-GRHL2-7:3	XLOC_006886	linc-GRHL2-4	NA	NA	NA	inter
CUST_49111_PI429285431	8.885064	P	9.42329	P	0.688617141997043	0	lncRNA	52935-1_{1..203}	hg19_lincRNAsTranscripts_TCONS_l2_00021137 range=chr4:53581118-53588673 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021137 range=chr4:53581118-53588673 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 53581118	 53581320	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5177_PI429285431	0.9158496	A	0.9258917	A	0.993063515934888	0	lncRNA	5118-1_{1..481}	"transcript_id ""ENST00000560623.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560623.1"" | genecode_v17"	chr15	 48481584	 48482064	-	ENSG00000259235.1	ENST00000560623.1	RP11-605F22.2	RP11-605F22.2-001	CTXN2	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr15:48483867-48493888"	NA	inner
CUST_393_PI429285431	7.152571	P	7.3783016	P	0.855161850648478	0	lncRNA	385-1_{1..196}	"transcript_id ""ENST00000413650.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413650.1"" | genecode_v17"	chr1	142618808	142619003	+	ENSG00000230880.2	ENST00000413650.1	RP11-417J8.3	RP11-417J8.3-003	NA	NA	NA	inter
CUST_41675_PI429285431	1.790429	A	3.0990367	A	0.403710299894689	0	lncRNA	43117-1_{1..86}	ENST00000577862 ncrna:miRNA chromosome:GRCh37:5:128732755:128732840:-1 gene:ENSG00000265691 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577862 ncrna:miRNA chromosome:GRCh37:5:128732755:128732840:-1 gene:ENSG00000265691 gene_biotype:miRNA transcript_biotype:miRNA	chr5	128732755	128732840	-	ENSG00000265691	ENST00000577862	NA	NA	NA	NA	NA	inter
CUST_44545_PI429285431	7.5447574	P	6.230938	P	2.48598811641749	0	lncRNA	49132-3_{6001..7775}	"gi|402478648|ref|NR_073103.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402478648|ref|NR_073103.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 2, non-coding RNA"	Chr5	 52291156	 52292930	+	3673	NR_073103.1	NA	NA	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.21;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00"	NA	inter
CUST_7563_PI429285431	3.7883217	P	3.997516	P	0.865020183121344	0	lncRNA	9199-1_{1..696}	lnc-NBN-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NBN-1:3	chr8	 90769273	 90769968	-	lnc-NBN-1	lnc-NBN-1:3	ENSG00000251136	RP11-37B2.1	RIPK2	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60chr8:90769975-90779592"	NA	inter
CUST_38375_PI429285431	2.599034	A	2.6751313	A	0.948620334972382	0	lncRNA	39415-1_{1..2846}	n382213|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yao.2||0.2473180|-0.2424801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382213|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yao.2||0.2473180|-0.2424801	chr14	 92964977	 92967822	+	NA	NA	NA	NA	SLC24A4	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80chr14:92954977-92967825"	NA	inner
CUST_12269_PI429285431	0.8962631	A	0.8957556	A	1.00035183407323	0	lncRNA	13878-1_{1..872}	lnc-WRN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRN-1:1	chr8	 31034248	 31035119	+	lnc-WRN-1	lnc-WRN-1:1	XLOC_006763	linc-NRG1-4	WRN	NA	chr8:31024248-31031277	inter
LNCA_21_P0006194	0.9103206	A	0.90615994	A	1.00288811233194	0	lncRNA	TCONS_00016106	NA	NA	NA	NA	XLOC_007493	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007493), lincRNA [TCONS_00016106]"	chr9:104654653-104654712	hs|9q31.1	Agilent_HUMAN_G3V2	TCONS_00016106	TCONS_00016106	chr9	104654653	104654712	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46077_PI429285431	1.7733337	A	0.90199375	A	1.82936119044368	0	lncRNA	50348-1_{1..1178}	"gi|410170641|ref|XR_159030.2| PREDICTED: Homo sapiens uncharacterized LOC100653022 (PP12719), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170641|ref|XR_159030.2| PREDICTED: Homo sapiens uncharacterized LOC100653022 (PP12719), misc_RNA"	NA	NA	NA	NA	NA	XR_159030.2	NA	NA	NA	NA	NA	Unknown
CUST_34030_PI429285431	1.1389432	A	0.9087125	A	1.17302251115579	0	lncRNA	35563-1_{1..498}	n340848|AF085926|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3312|NULL|-1.2882800|-0.3800978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340848|AF085926|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3312|NULL|-1.2882800|-0.3800978	chr6	 11208750	 11209247	-	NA	NA	NA	NA	NEDD9	NA	chr6:11198750-11219248	inter
CUST_41923_PI429285431	2.187476	A	1.8337504	A	1.27785629234958	0	lncRNA	43669-1_{1..83}	ENST00000408417 ncrna:miRNA chromosome:GRCh37:2:220088745:220088827:-1 gene:ENSG00000221344 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408417 ncrna:miRNA chromosome:GRCh37:2:220088745:220088827:-1 gene:ENSG00000221344 gene_biotype:miRNA transcript_biotype:miRNA	chr2	220088745	220088827	-	ENSG00000221344	ENST00000408417	NA	NA	ATG9A	NA	chr2:220084102-220094361	inner
CUST_30148_PI429285431	0.91391087	A	0.89946944	A	1.01006030449117	0	lncRNA	31922-1_{1..288}	n334797|AJ240597|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245378|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245378|1.1923500|-0.1722021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334797|AJ240597|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245378|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245378|1.1923500|-0.1722021	chr14	106111027	106111314	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6295_PI429285431	2.0881095	A	1.0885955	A	1.99932637440883	0	lncRNA	6219-1_{1..1256}	"transcript_id ""ENST00000590086.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590086.1"" | genecode_v17"	chr19	  1321224	  1322479	+	ENSG00000267372.1	ENST00000590086.1	AC005330.2	AC005330.2-001	LOC100287367	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20chr19:1311224-1322505"	NA	inter
LNCA_21_P0003594	3.670456	P	4.3173056	P	0.638673457411116	0	lncRNA	TCONS_00008035	NA	NA	NA	NA	XLOC_003498	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003498), lincRNA [TCONS_00008035]"	chr4:32230601-32230660	hs|4p15.1	Agilent_HUMAN_G3V2	TCONS_00008035	TCONS_00008035	chr4	 32230601	 32230660	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35598_PI429285431	9.242622	P	9.162292	P	1.05725984901041	0	lncRNA	37013-1_{1..1207}	n342737|BC040735|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5240|NULL|-1.2213500|-0.2879840	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342737|BC040735|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5240|NULL|-1.2213500|-0.2879840	chr11	   318652	   319858	+	NA	NA	NA	NA	IFITM1	NA	chr11:313991-315272	inner
CUST_33613_PI429285431	4.741226	P	5.017398	P	0.825779208583595	0	lncRNA	35178-1_{1..229}	n340372|AF009297|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2833|NULL|-1.2040800|-0.3879888	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340372|AF009297|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2833|NULL|-1.2040800|-0.3879888	chr5	 10252772	 10253000	+	NA	NA	NA	NA	CCT5	NA	chr5:10250282-10263000	inner
CUST_50463_PI429285431	2.4933305	A	2.808852	P	0.803560470209012	0	lncRNA	54166-1_{1..1385}	hg19_lincRNAsTranscripts_TCONS_l2_00030259 range=chrX:73289116-73290875 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030259 range=chrX:73289116-73290875 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 73289116	 73290500	+	NA	NA	NA	NA	LOC100506745	NA	chrX:73280376-73286133	inter
LNCA_21_P0007993	0.90125847	A	1.0677961	A	0.890978404934049	0	lncRNA	ENST00000452288	NA	NA	NA	NA	XLOC_010606	NA	ENST00000452288	NA	NA	"BROAD Institute lincRNA (XLOC_010606), lincRNA [TCONS_00021650]"	chr13:49147297-49144972	hs|13q14.2	Agilent_HUMAN_G3V2	ENST00000452288	ENST00000452288	chr13	 49144972	 49147297	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6720_PI429285431	1.8990529	A	2.640056	A	0.598323195963263	0	lncRNA	6668-1_{1..538}	"transcript_id ""ENST00000448013.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448013.1"" | genecode_v17"	chr20	 51297967	 51298504	+	ENSG00000232294.1	ENST00000448013.1	RP4-715N11.2	RP4-715N11.2-003	NA	NA	NA	inter
CUST_44461_PI429285431	0.9010934	A	0.9068515	A	0.996016743515422	0	lncRNA	49065-1_{1..1039}	"gi|256221085|ref|NR_028342.1| Homo sapiens uncharacterized LOC285501 (LOC285501), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|256221085|ref|NR_028342.1| Homo sapiens uncharacterized LOC285501 (LOC285501), non-coding RNA"	NA	NA	NA	NA	NA	NR_028342.1	NA	NA	NA	NA	NA	Unknown
CUST_49039_PI429285431	0.89978784	A	1.2589558	A	0.779614073877289	0	lncRNA	52868-1_{1..747}	hg19_lincRNAsTranscripts_TCONS_l2_00021701 range=chr4:129214088-129396155 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021701 range=chr4:129214088-129396155 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	129214088	129214834	+	NA	NA	NA	NA	PGRMC2	NA	chr4:129204088-129209984	inter
LNCA_21_P0001735	1.6207138	A	2.0612552	A	0.736858036124714	0	lncRNA	TCONS_00002424	NA	NA	NA	NA	XLOC_000947	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000947), lincRNA [TCONS_00002424]"	chr1:106016351-106016292	hs|1p21.1	Agilent_HUMAN_G3V2	TCONS_00002424	TCONS_00002424	chr1	106016292	106016351	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33541_PI429285431	2.1768026	A	2.1294556	A	1.03336290438259	0	lncRNA	35109-1_{1..458}	n340289|BX537950|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2750|NULL|-0.8329120|-0.3091041	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340289|BX537950|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2750|NULL|-0.8329120|-0.3091041	chr4	184154780	184155237	-	NA	NA	NA	NA	WWC2	NA	chr4:184144780-184171787	inner
CUST_47081_PI429285431	2.02366	A	2.017625	A	1.00419190479103	0	lncRNA	51165-1_{1..615}	"gi|410170744|ref|XR_171073.1| PREDICTED: Homo sapiens putative uncharacterized protein FLJ25328-like (LOC101060187), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170744|ref|XR_171073.1| PREDICTED: Homo sapiens putative uncharacterized protein FLJ25328-like (LOC101060187), misc_RNA"	Chr19	 19862304	 19862918	-	101060187	XR_171073.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0011108	5.0958323	P	5.739296	P	0.640174137721966	0	lncRNA	ENST00000397313	XR_110103	XR_110103	NA	Hs.614816	XLOC_l2_003599	NA	ENST00000397313	THC2643008	NA	"PREDICTED: Homo sapiens zinc finger protein 891 (ZNF891), miscRNA [XR_110103]"	chr12:133697106-133697047	hs|12q24.33	Agilent_HUMAN_G3V2	ENST00000397313	ENST00000397313	chr12	133697047	133697106	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6080_PI429285431	1.7258778	A	1.7925235	A	0.954855480710805	0	lncRNA	6004-1_{1..412}	"transcript_id ""ENST00000582470.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582470.1"" | genecode_v17"	chr18	 10125337	 10125748	+	ENSG00000265554.1	ENST00000582470.1	RP11-419J16.1	RP11-419J16.1-001	NA	NA	NA	inter
CUST_36979_PI429285431	1.9923549	A	3.5555263	P	0.338406362862409	0	lncRNA	38125-1_{1..414}	n345441|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_990|NULL|-1.3206600|-0.4856476	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345441|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_990|NULL|-1.3206600|-0.4856476	chr1	 52027006	 52027419	-	NA	NA	NA	NA	OSBPL9	NA	chr1:52020400-52037426	inter
CUST_22092_PI429285431	2.538346	A	2.6246505	A	0.941932445537004	0	lncRNA	23697-1_{1..748}	lnc-ZNF727-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ZNF727-1:1	chr7	 63544972	 63545719	+	lnc-ZNF727-1	lnc-ZNF727-1:1	ENSG00000244117.1	RP11-3N2.1	ZNF727	NA	chr7:63534972-63538927	inter
CUST_41105_PI429285431	4.9110107	P	4.924662	P	0.990582267152756	0	lncRNA	41847-1_{1..96}	ENST00000385042 ncrna:miRNA chromosome:GRCh37:1:3477259:3477354:-1 gene:ENSG00000207776 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385042 ncrna:miRNA chromosome:GRCh37:1:3477259:3477354:-1 gene:ENSG00000207776 gene_biotype:miRNA transcript_biotype:miRNA	chr1	  3477259	  3477354	-	ENSG00000207776	ENST00000385042	NA	NA	MEGF6	NA	chr1:3467259-3487354	inner
CUST_19379_PI429285431	0.9018018	A	0.90428066	A	0.998283260466007	0	lncRNA	21041-1_{1..581}	lnc-CAST-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CAST-4:2	chr5	 95654177	 95654757	+	lnc-CAST-4	lnc-CAST-4:2	ENSG00000251314.1	CTD-2337A12.1	NA	NA	NA	inter
CUST_18930_PI429285431	5.3548975	P	5.3516574	P	1.00224839002623	0	lncRNA	20622-1_{1..482}	lnc-FAM75A4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-FAM75A4-1:1	chr9	 41550114	 41550595	-	lnc-FAM75A4-1	lnc-FAM75A4-1:1	ENSG00000227084	RP11-144A16.5	NA	NA	NA	inter
CUST_6241_PI429285431	0.90283406	A	0.90592414	A	0.997860411948953	0	lncRNA	6166-1_{1..288}	"transcript_id ""ENST00000578039.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578039.1"" | genecode_v17"	chr18	 65339458	 65339745	-	ENSG00000263594.1	ENST00000578039.1	RP11-28O3.2	RP11-28O3.2-001	NA	NA	NA	inter
CUST_26377_PI429285431	1.8362336	A	1.3886338	A	1.36376947615837	0	lncRNA	27884-1_{1..532}	lnc-NFE2L2-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-NFE2L2-5:3	chr2	177630795	177631326	-	lnc-NFE2L2-5	lnc-NFE2L2-5:3	ENSG00000230552.1	AC092162.1	NA	NA	NA	inter
CUST_12308_PI429285431	5.6507206	P	6.621497	P	0.51023140309288	0	lncRNA	13921-1_{1..404}	lnc-TPST1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPST1-1:6	chr7	 65960242	 65960645	+	lnc-TPST1-1	lnc-TPST1-1:6	XLOC_006133	linc-KCTD7-2	NA	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80"	NA	inter
CUST_48815_PI429285431	0.8888428	A	0.88606626	A	1.00192640400937	0	lncRNA	52653-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00014342 range=chr2:242908542-242913850 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014342 range=chr2:242908542-242913850 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	242908542	242911541	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43279_PI429285431	0.9198496	A	0.9221756	A	0.998389038651524	0	lncRNA	48097-1_{1..393}	ENST00000602406 havana:sense_intronic chromosome:GRCh37:1:7836443:7836835:1 gene:ENSG00000269925 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602406 havana:sense_intronic chromosome:GRCh37:1:7836443:7836835:1 gene:ENSG00000269925 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr1	  7836443	  7836835	+	ENSG00000269925	ENST00000602406	NA	NA	CAMTA1	NA	chr1:7826443-7829766	inner
CUST_39935_PI429285431	6.4132643	P	4.550684	P	3.63657492321417	0	lncRNA	40813-1_{1..2143}	n406868|NR_024350|lncRNA|Homosapiens||RefGeneNoncode|NR_024350||0.8230270|-0.2841000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406868|NR_024350|lncRNA|Homosapiens||RefGeneNoncode|NR_024350||0.8230270|-0.2841000	chr1	 52521856	 52523998	+	NA	NA	NA	NA	TXNDC12	NA	chr1:52511856-52521047	inner
CUST_10070_PI429285431	0.9024718	A	0.9122188	A	0.993266665601974	0	lncRNA	11594-1_{1..228}	lnc-PCLO-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCLO-2:1	chr7	 82324613	 82324840	-	lnc-PCLO-2	lnc-PCLO-2:1	XLOC_006511	linc-CACNA2D1	NA	NA	NA	inter
CUST_22387_PI429285431	2.2852535	A	1.5962007	A	1.61222466638047	0	lncRNA	23977-1_{1..781}	lnc-C9orf66-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C9orf66-3:1	chr9	   685528	   686308	-	lnc-C9orf66-3	lnc-C9orf66-3:1	ENSG00000227914.1	RP11-130C19.3	KANK1	NA	chr9:675528-695555	inner
CUST_24706_PI429285431	2.4525287	A	2.3860304	A	1.04717190771154	0	lncRNA	26252-1_{1..559}	lnc-OTUB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OTUB1-1:1	chr11	 63755809	 63756367	+	lnc-OTUB1-1	lnc-OTUB1-1:1	ENSG00000256100.1	AP000721.4	OTUB1	NA	chr11:63753325-63765818	inter
CUST_43392_PI429285431	1.7669592	A	2.007277	A	0.846558810006637	0	lncRNA	48207-1_{1..3000}	"gi|299829196|ref|NR_033887.1| Homo sapiens uncharacterized LOC339505 (LOC339505), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|299829196|ref|NR_033887.1| Homo sapiens uncharacterized LOC339505 (LOC339505), non-coding RNA"	Chr1	 20686294	 20689293	-	339505	NR_033887.1	NA	NA	NA	NA	NA	inter
CUST_44938_PI429285431	2.1302888	A	1.5402118	A	1.50532708808554	0	lncRNA	49450-1_{1..2265}	"gi|210032242|ref|NR_024271.1| Homo sapiens septin 7 pseudogene 2 (SEPT7P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|210032242|ref|NR_024271.1| Homo sapiens septin 7 pseudogene 2 (SEPT7P2), non-coding RNA"	Chr7	 45763386	 45765650	-	641977	NR_024271.1	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80"	NA	inter
CUST_36048_PI429285431	7.4768486	P	7.616867	P	0.907507580975044	0	lncRNA	37363-4_{9001..9556}	n344644|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_192|NULL|-1.3349100|-0.2234839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344644|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_192|NULL|-1.3349100|-0.2234839	chr5	173093842	173094397	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014684	1.547069	A	0.9021382	A	1.56366428207378	0	lncRNA	XR_111563	XR_111563	XR_111563	NA	Hs.720286	LOC100507803	uncharacterized LOC100507803	NA	THC2461686	NA	"PREDICTED: Homo sapiens hypothetical LOC100507803 (LOC100507803), miscRNA [XR_111563]"	chr16:29417052-29416993	hs|16p11.2	Agilent_HUMAN_G3V2	XR_111563	XR_111563	chr16	 29416993	 29417052	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009253	0.91170067	A	0.9029186	A	1.00610583212115	0	lncRNA	TCONS_00025423	NA	NA	NA	NA	XLOC_012230	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012230), lincRNA [TCONS_00025423]"	chr17:47330258-47366304	hs|17q21.32	Agilent_HUMAN_G3V2	TCONS_00025423	TCONS_00025423	chr17	 47330258	 47366304	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35664_PI429285431	0.90789545	A	1.2609022	A	0.782950633022812	0	lncRNA	37085-1_{1..2108}	n342823|AK131218|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5326|NULL|7.3779500|-0.3020030	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342823|AK131218|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5326|NULL|7.3779500|-0.3020030	chr7	141408152	141410259	+	NA	NA	NA	NA	WEE2	NA	chr7:141408153-141431071	inner
CUST_40419_PI429285431	10.55933	P	10.845232	P	0.820228626142034	0	lncRNA	41204-1_{1..1895}	n409285|NR_033489_5|lncRNA|Homosapiens||RefGeneNoncode|NR_033489_5||-0.6110490|-0.3602188	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409285|NR_033489_5|lncRNA|Homosapiens||RefGeneNoncode|NR_033489_5||-0.6110490|-0.3602188	chr6	  3034405	  3036299	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40"	NA	inter
CUST_5185_PI429285431	2.0092113	A	1.461784	A	1.46147717737576	0	lncRNA	5126-1_{1..865}	"transcript_id ""ENST00000561318.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561318.1"" | genecode_v17"	chr15	 52303196	 52304060	-	ENSG00000259438.1	ENST00000561318.1	CTD-2650P22.1	CTD-2650P22.1-001	MAPK6	NA	chr15:52311411-52321292	inter
CUST_10273_PI429285431	1.8957695	A	2.515401	A	0.650837146398204	0	lncRNA	11798-1_{1..385}	lnc-ZNF287-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF287-1:1	chr17	 16439400	 16439784	-	lnc-ZNF287-1	lnc-ZNF287-1:1	XLOC_012404	linc-C17orf76	NA	NA	NA	inter
CUST_8333_PI429285431	0.90167177	A	0.8966956	A	1.00345517360379	0	lncRNA	9915-1_{1..821}	lnc-PEX2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PEX2-1:4	chr8	 77527388	 77528208	-	lnc-PEX2-1	lnc-PEX2-1:4	ENSG00000253661	RP11-65D13.1	NA	NA	NA	inter
CUST_37667_PI429285431	0.91914546	A	0.918088	A	1.00073324410968	0	lncRNA	38760-1_{1..256}	n346152|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1702|NULL|-1.3848600|-0.1115900	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346152|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1702|NULL|-1.3848600|-0.1115900	chr11	 28942287	 28942542	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010102	4.116352	P	3.49632	P	1.53690927064844	0	lncRNA	TCONS_00028595	NA	NA	NA	NA	XLOC_013614	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013614), lincRNA [TCONS_00028595]"	chr20:62149348-62149407	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028595	TCONS_00028595	chr20	 62149348	 62149407	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14515_PI429285431	4.337204	P	4.771023	P	0.740299520885213	0	lncRNA	16181-1_{1..609}	lnc-FBXO45-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXO45-1:1	chr3	196326901	196327509	+	lnc-FBXO45-1	lnc-FBXO45-1:1	XLOC_003006	linc-LRRC33	NA	NA	NA	inter
CUST_32917_PI429285431	0.8971809	A	0.8915055	A	1.00394163540046	0	lncRNA	34542-1_{1..1712}	n339590|BC042559|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2034|NULL|-0.9603990|-0.1858283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339590|BC042559|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2034|NULL|-0.9603990|-0.1858283	chr20	 18655038	 18656749	-	NA	NA	NA	NA	DTD1	NA	chr20:18645038-18689352	inner
CUST_31326_PI429285431	6.0887756	P	5.4334726	P	1.57494669437326	0	lncRNA	33109-1_{1..1658}	n337793|AK098473|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|175|NULL|-1.1923300|-0.3490976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337793|AK098473|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|175|NULL|-1.1923300|-0.3490976	chrX	 99929124	 99930781	+	NA	NA	NA	NA	SRPX2	NA	chrX:99919124-99926296	inner
CUST_23193_PI429285431	2.319667	A	2.8494322	A	0.692667457174543	0	lncRNA	24765-1_{1..429}	lnc-RP11-791J7.2.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-791J7.2.1-1:2	chr11	125462313	125462741	-	lnc-RP11-791J7.2.1-1	lnc-RP11-791J7.2.1-1:2	ENSG00000254671.1	RP11-791J7.2	STT3A	NA	chr11:125462739-125472463	inter
CUST_23523_PI429285431	0.9540332	A	1.3782425	A	0.745247068312735	0	lncRNA	25090-1_{1..576}	lnc-KIDINS220-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIDINS220-2:5	chr2	  8818709	  8819284	-	lnc-KIDINS220-2	lnc-KIDINS220-2:5	ENSG00000235092.1	AC011747.7	ID2	NA	chr2:8822113-8824583	inter
CUST_513_PI429285431	6.1435857	P	6.2039914	P	0.958994402768672	0	lncRNA	505-1_{1..290}	"transcript_id ""ENST00000444887.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444887.1"" | genecode_v17"	chr1	187412738	187413027	+	ENSG00000231599.1	ENST00000444887.1	RP11-445P19.1	RP11-445P19.1-001	NA	NA	NA	inter
CUST_14022_PI429285431	6.7833323	P	7.9999175	P	0.430300016285403	0	lncRNA	15671-1_{1..499}	lnc-TOMM20-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TOMM20-2:10	chr1	235097164	235097662	-	lnc-TOMM20-2	lnc-TOMM20-2:10	XLOC_001265	linc-IRF2BP2-1	NA	NA	NA	inter
CUST_12660_PI429285431	6.8782096	P	6.801276	P	1.05477377001682	0	lncRNA	14276-1_{1..653}	lnc-LRRC32-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC32-5:1	chr11	 76479154	 76479806	-	lnc-LRRC32-5	lnc-LRRC32-5:1	XLOC_009508	linc-LRRC32-1	NA	NA	NA	inter
CUST_26878_PI429285431	7.383354	P	7.4375844	P	0.963108072309141	0	lncRNA	28395-1_{1..566}	n323953|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000106520|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000106520|-1.0833300|-0.2191677	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323953|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000106520|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000106520|-1.0833300|-0.2191677	chr9	131293091	131293656	+	NA	NA	NA	NA	SPTAN1	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr9:131314837-131315674"	NA	inner
CUST_38893_PI429285431	2.2233226	A	2.5094519	A	0.820099407370679	0	lncRNA	39879-1_{1..2785}	n384850|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003nlq.2||-0.6649160|-0.2613436	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n384850|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003nlq.2||-0.6649160|-0.2613436	chr6	 28827401	 28830185	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39405_PI429285431	8.986536	P	7.995365	P	1.98779778271174	0	lncRNA	40365-1_{1..938}	n386605|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ptz.1||2.6808100|-0.4205905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386605|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ptz.1||2.6808100|-0.4205905	chr1	214655881	214656818	-	NA	NA	NA	NA	PTPN14	NA	chr1:214645881-214666819	inner
CUST_1794_PI429285431	0.8952619	A	0.90359855	A	0.994238138122935	0	lncRNA	1780-1_{1..385}	"transcript_id ""ENST00000503625.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503625.1"" | genecode_v17"	chr4	 66567920	 66568304	+	ENSG00000248479.1	ENST00000503625.1	RP11-807H7.2	RP11-807H7.2-001	NA	NA	NA	inter
CUST_4078_PI429285431	1.2128571	A	0.91987324	A	1.22517162534848	0	lncRNA	4039-1_{1..2065}	"transcript_id ""ENST00000525984.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525984.1"" | genecode_v17"	chr11	112404945	112407009	-	ENSG00000255484.1	ENST00000525984.1	RP11-65M17.1	RP11-65M17.1-001	NA	NA	NA	inter
CUST_8995_PI429285431	3.0379775	A	3.378895	A	0.78953903491702	0	lncRNA	10526-1_{1..594}	lnc-ANXA3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANXA3-1:3	chr4	 79584072	 79584665	+	lnc-ANXA3-1	lnc-ANXA3-1:3	ENSG00000251442	RP11-792D21.2	NA	NA	NA	inter
CUST_42708_PI429285431	7.116039	P	7.229051	P	0.924655587012755	0	lncRNA	45638-1_{1..132}	ENST00000391287 ncrna:snoRNA chromosome:GRCh37:10:115580218:115580349:1 gene:ENSG00000212589 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391287 ncrna:snoRNA chromosome:GRCh37:10:115580218:115580349:1 gene:ENSG00000212589 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	115580218	115580349	+	ENSG00000212589	ENST00000391287	NA	NA	NA	NA	NA	inter
CUST_32033_PI429285431	5.659667	P	5.961113	P	0.811438691086117	0	lncRNA	33753-1_{1..3000}	n338599|D84239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1005|NULL|36.1234000|-0.1103645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338599|D84239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1005|NULL|36.1234000|-0.1103645	chr19	 40353970	 40356969	-	NA	NA	NA	NA	FCGBP	NA	chr19:40353963-40440533	inner
CUST_41233_PI429285431	1.168069	A	1.2088249	A	0.972145458382572	0	lncRNA	42150-1_{1..94}	ENST00000384880 ncrna:miRNA chromosome:GRCh37:10:29833933:29834026:-1 gene:ENSG00000207612 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384880 ncrna:miRNA chromosome:GRCh37:10:29833933:29834026:-1 gene:ENSG00000207612 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 29833933	 29834026	-	ENSG00000207612	ENST00000384880	NA	NA	SVIL	NA	chr10:29823933-29844026	inner
CUST_36267_PI429285431	3.0552702	P	3.7764459	P	0.606602899909375	0	lncRNA	37505-1_{1..1883}	n344798|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_347|NULL|-1.3634000|-0.1326780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344798|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_347|NULL|-1.3634000|-0.1326780	chr22	 25844084	 25845966	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00"	NA	inter
CUST_2669_PI429285431	0.89863276	A	0.9070548	A	0.994179293058806	0	lncRNA	2655-1_{1..880}	"transcript_id ""ENST00000456346.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456346.1"" | genecode_v17"	chr6	150361683	150362562	-	ENSG00000235972.1	ENST00000456346.1	RP11-472G23.10	RP11-472G23.10-001	NA	NA	NA	inter
LNCA_33_P3400319	2.3132668	A	3.206604	P	0.538367341206317	0	lncRNA	ENST00000383686	XR_108461	XR_108461	NA	Hs.124136	NA	NA	ENST00000383686	THC2637335	NA	"PREDICTED: Homo sapiens hypothetical LOC151760 (LOC151760), miscRNA [XR_108461]"	chr3:110612294-110612235	hs|3q13.13	Agilent_HUMAN_G3V2	ENST00000383686	ENST00000383686	chr3	110612235	110612294	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13354_PI429285431	1.024947	A	0.9001114	A	1.09038347268529	0	lncRNA	14991-1_{1..296}	lnc-RBM28-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RBM28-2:1	chr7	127876311	127876606	-	lnc-RBM28-2	lnc-RBM28-2:1	XLOC_006597	linc-LRRC4-1	LEP	NA	chr7:127881331-127886469	inter
CUST_46035_PI429285431	2.6151237	A	3.5548437	P	0.521334051746384	0	lncRNA	50314-1_{1..3000}	"gi|391224462|ref|NR_052006.1| Homo sapiens PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) (PRPF40B), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|391224462|ref|NR_052006.1| Homo sapiens PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) (PRPF40B), transcript variant 2, non-coding RNA"	Chr12	 50017403	 50020402	+	25766	NR_052006.1	NA	NA	NA	NA	NA	inter
CUST_31233_PI429285431	1.1482416	A	0.9057227	A	1.18305643845663	0	lncRNA	33023-1_{1..1354}	n337681|AL109707|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|63|NULL|-0.2422760|-0.3787665	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337681|AL109707|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|63|NULL|-0.2422760|-0.3787665	chr15	 30020389	 30021742	-	NA	NA	NA	NA	TJP1	NA	chr15:30010389-30031735	inner
CUST_24137_PI429285431	0.9110938	A	0.91133904	A	0.999830027032481	0	lncRNA	25689-1_{1..333}	lnc-MON2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MON2-3:1	chr12	 63547640	 63547972	+	lnc-MON2-3	lnc-MON2-3:1	ENSG00000257973.1	RP11-715H19.2	AVPR1A	NA	chr12:63540216-63546590	inter
CUST_20162_PI429285431	2.3910546	A	0.90049225	A	2.80998484572675	0	lncRNA	21807-1_{1..343}	lnc-PRKACB-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PRKACB-4:1	chr1	 81971675	 81972017	+	lnc-PRKACB-4	lnc-PRKACB-4:1	ENSG00000227960.1	RP5-837I24.6	NA	NA	NA	inter
CUST_23321_PI429285431	8.768603	P	8.639102	P	1.09391527191989	0	lncRNA	24892-1_{1..446}	lnc-CBR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CBR1-1:1	chr21	 37436515	 37436960	+	lnc-CBR1-1	lnc-CBR1-1:1	ENSG00000236677.1	AP000688.11	SETD4	NA	chr21:37426515-37432819	inter
LNCA_21_P0009601	0.91928613	A	1.159695	A	0.846505372741414	0	lncRNA	TCONS_00026598	NA	NA	NA	NA	XLOC_012624	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012624), lincRNA [TCONS_00026598]"	chr18:10020762-10020821	hs|18p11.22	Agilent_HUMAN_G3V2	TCONS_00026598	TCONS_00026598	chr18	 10020762	 10020821	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_175_PI429201921	5.1886473	P	5.201827	P	0.99090612974782	0	lncRNA	146-2_{3001..4538}	TC03002351.hg.1	TCONS_00005520-XLOC_002664 // Rinn lincRNAs // linc-CCDC66-1 chr3:+:55330227-55334766 // chr3 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr3:+:55330227-55334766	NA	Affy_HUMAN_HTA2.0	TCONS_00005520-XLOC_002664	linc-CCDC66-1	chr3	 55330227	 55334766	+	NA	NA	NA	NA	CAMTA1	NA	chr1:7750764-7771030	Unknown
LNCA_21_P0007569	3.7286334	P	3.6147552	P	1.0821332812134	0	lncRNA	ENST00000548969	XR_110368	XR_110368	NA	NA	XLOC_009781	NA	ENST00000548969	THC2730671	NA	"PREDICTED: Homo sapiens hypothetical LOC100506869, transcript variant 2 (LOC100506869), miscRNA [XR_110368]"	chr12:59206355-59206414	hs|12q14.1	Agilent_HUMAN_G3V2	ENST00000548969	ENST00000548969	chr12	 59206355	 59206414	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21474_PI429285431	4.553321	P	5.0550947	P	0.706237973432844	0	lncRNA	23092-1_{1..196}	lnc-TREX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TREX1-1:1	chr3	 48706532	 48706727	+	lnc-TREX1-1	lnc-TREX1-1:1	ENSG00000228350.1	RP11-148G20.1	CELSR3	NA	chr3:48696532-48700348	inter
CUST_3932_PI429285431	6.2126	P	5.9909472	P	1.16606870910477	0	lncRNA	3902-1_{1..605}	"transcript_id ""ENST00000524410.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524410.1"" | genecode_v17"	chr11	 45376922	 45377526	+	ENSG00000254427.1	ENST00000524410.1	RP11-430H10.1	RP11-430H10.1-001	NA	NA	NA	inter
CUST_3607_PI429285431	7.8734818	P	7.6971393	P	1.13001545168456	0	lncRNA	3577-1_{1..917}	"transcript_id ""ENST00000417112.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417112.1"" | genecode_v17"	chr10	  6779344	  6780260	+	ENSG00000223784.1	ENST00000417112.1	RP11-554I8.2	RP11-554I8.2-001	NA	NA	NA	inter
CUST_1294_PI429285431	0.90480506	A	0.90428704	A	1.0003591285737	0	lncRNA	1284-1_{1..246}	"transcript_id ""ENST00000342990.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000342990.3"" | genecode_v17"	chr3	  6549468	  6549713	+	ENSG00000189229.10	ENST00000342990.3	AC069277.2	AC069277.2-004	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40"	NA	inter
CUST_31848_PI429285431	5.602138	P	5.927422	P	0.79814125375292	0	lncRNA	33581-1_{1..2770}	n338396|BX648739|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|792|NULL|0.0190725|-0.2043995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338396|BX648739|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|792|NULL|0.0190725|-0.2043995	chr19	 18669874	 18672643	-	NA	NA	NA	NA	C19orf50	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-55.00;hg19_refFlat_KXD1:range=chr19:18672867-186794415'pad=0,hg19_refFlat_KXD1:range=chr19:18672867-186794415'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20chr19:18668572-18680197"	NA	inner
CUST_8385_PI429285431	0.91545916	A	1.1907105	A	0.826306350147049	0	lncRNA	9963-2_{3001..6000}	lnc-OIT3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OIT3-1:1	chr10	 74777855	 74780854	+	lnc-OIT3-1	lnc-OIT3-1:1	ENSG00000247170	ENST00000502140	P4HA1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_P4HA1:range=chr10:74767980-748346415'pad=0,hg19_refFlat_P4HA1:range=chr10:74767980-748346415'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50chr10:74766975-74786047"	NA	inner
CUST_23530_PI429285431	0.88971406	A	0.89443684	A	0.996731770684958	0	lncRNA	25097-1_{1..652}	lnc-PTPN9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPN9-1:2	chr15	 75893479	 75894130	-	lnc-PTPN9-1	lnc-PTPN9-1:2	ENSG00000260269.1	CTD-2323K18.1	SNUPN	NA	chr15:75890424-75903527	inner
CUST_36242_PI429285431	1.5148176	A	2.3095877	A	0.576435023617053	0	lncRNA	37488-2_{3001..6000}	n344780|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_329|NULL|-1.3209200|-0.3677044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344780|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_329|NULL|-1.3209200|-0.3677044	chr8	 72590444	 72593443	+	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60"	NA	inter
CUST_36235_PI429285431	1.8716068	A	0.9311919	A	1.9190800613253	0	lncRNA	37484-1_{1..928}	n344776|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_325|NULL|-1.3275900|-0.2143293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344776|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_325|NULL|-1.3275900|-0.2143293	chr16	 11559115	 11560042	+	NA	NA	NA	NA	LOC400499	NA	chr16:11549115-11585611	inter
CUST_45683_PI429285431	1.0483539	A	0.9205231	A	1.09264958509323	0	lncRNA	50057-1_{1..3000}	"gi|223972641|ref|NR_026940.1| Homo sapiens cancer susceptibility candidate 2 (non-protein coding) (CASC2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223972641|ref|NR_026940.1| Homo sapiens cancer susceptibility candidate 2 (non-protein coding) (CASC2), transcript variant 2, non-coding RNA"	Chr10	119806332	119809331	+	255082	NR_026940.1	NA	NA	NA	NA	NA	inter
CUST_16479_PI429285431	1.2097249	A	0.9205041	A	1.22198010762703	0	lncRNA	18177-1_{1..226}	lnc-WDR7-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR7-4:1	chr18	 53807019	 53807244	+	lnc-WDR7-4	lnc-WDR7-4:1	XLOC_012687	linc-WDR7-1	NA	NA	NA	inter
CUST_16917_PI429285431	3.2098927	P	3.218496	P	0.994054392360069	0	lncRNA	18627-1_{1..2412}	lnc-NIPBL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NIPBL-1:1	chr5	 36874735	 36877146	+	lnc-NIPBL-1	lnc-NIPBL-1:1	XLOC_004339	linc-NIPBL	NIPBL	NA	chr5:36876861-36886605	inter
CUST_24684_PI429285431	0.9115099	A	1.1649939	A	0.838868163688754	0	lncRNA	26231-1_{1..1300}	lnc-AGGF1-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGGF1-3:8	chr5	 76400350	 76401649	+	lnc-AGGF1-3	lnc-AGGF1-3:8	ENSG00000250802.2	CTC-564N23.3	NA	NA	NA	inter
CUST_47635_PI429285431	2.4045076	A	2.3635721	A	1.02878071214437	0	lncRNA	51625-1_{1..3000}	"gi|300116206|ref|NR_033974.1| Homo sapiens uncharacterized LOC401613 (DKFZp686D0853), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300116206|ref|NR_033974.1| Homo sapiens uncharacterized LOC401613 (DKFZp686D0853), non-coding RNA"	ChrX	110754890	110757889	+	401613	NR_033974.1	NA	NA	NA	NA	NA	inter
CUST_38620_PI429285431	3.5496647	P	4.2449565	P	0.61758439309633	0	lncRNA	39624-1_{1..1782}	n383773|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ukr.2||1.1846900|-0.1594905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383773|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ukr.2||1.1846900|-0.1594905	chr2	177001339	177003120	+	NA	NA	NA	NA	HOXD8	NA	chr2:176994422-176997423	inter
CUST_38517_PI429285431	1.2677895	A	0.91166264	A	1.27998496136724	0	lncRNA	39528-1_{1..1031}	n383141|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002hhw.1||-1.0514500|-0.2883270	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n383141|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002hhw.1||-1.0514500|-0.2883270	chr17	 31890356	 31891386	+	NA	NA	NA	NA	ACCN1	NA	chr17:31880356-31909364	inner
CUST_282_PI429201921	0.9118713	A	0.9165685	A	0.996749443598503	0	lncRNA	199-3_{6001..6840}	TC13001267.hg.1	 TCONS_l2_00006987-XLOC_l2_003840 // Broad TUCP // linc-DAOA-3 chr13:+:104073680-104080432 // chr13 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00006986-XLOC_l2_003840 // Broad TUCP // linc-DAOA-3 chr13:+:104073591-104080432 // chr13 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00007459-XLOC_l2_003840 // Broad TUCP // linc-DAOA-3 chr13:+:104077549-104080035 // chr13 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr13:+:104073591-104080432	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00006986-XLOC_l2_003840	linc-DAOA-3	chr13	104073591	104080432	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18135_PI429285431	0.9103725	A	0.90268654	A	1.00534171787473	0	lncRNA	19870-1_{1..1172}	lnc-PDE9A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE9A-1:1	chr21	 44237521	 44238692	+	lnc-PDE9A-1	lnc-PDE9A-1:1	XLOC_013955	linc-NDUFV3-3	NA	NA	NA	inter
CUST_41966_PI429285431	6.154813	P	6.1872425	P	0.97777234072276	0	lncRNA	43758-1_{1..89}	ENST00000384879 ncrna:miRNA chromosome:GRCh37:2:241395418:241395506:1 gene:ENSG00000207611 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384879 ncrna:miRNA chromosome:GRCh37:2:241395418:241395506:1 gene:ENSG00000207611 gene_biotype:miRNA transcript_biotype:miRNA	chr2	241395418	241395506	+	ENSG00000207611	ENST00000384879	NA	NA	GPC1	NA	chr2:241385418-241405506	inner
CUST_40831_PI429285431	0.90379244	A	1.6286093	A	0.605073849608967	0	lncRNA	41534-1_{1..2305}	n410601|NR_037853_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037853_5||-1.1019900|-0.1864422	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410601|NR_037853_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037853_5||-1.1019900|-0.1864422	chr6	  2840911	  2843215	-	NA	NA	NA	NA	SERPINB1	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-57.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10chr6:2833733-2842081"	NA	inter
CUST_4139_PI429285431	11.46182	P	11.328632	P	1.09671449397373	0	lncRNA	4098-1_{1..572}	"transcript_id ""ENST00000544380.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544380.1"" | genecode_v17"	chr12	  4754662	  4755233	+	ENSG00000256381.1	ENST00000544380.1	RP11-500M8.4	RP11-500M8.4-001	NDUFA9	NA	chr12:4758264-4767193	inter
CUST_6392_PI429285431	12.108466	P	12.019058	P	1.06393351505813	0	lncRNA	6324-1_{1..180}	"transcript_id ""ENST00000599129.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599129.1"" | genecode_v17"	chr19	 22605315	 22605494	+	ENSG00000269796.1	ENST00000599129.1	AC011516.1	AC011516.1-001	ZNF98	NA	chr19:22595315-22605148	inter
CUST_25646_PI429285431	5.0670652	P	5.83898	P	0.5856396752067	0	lncRNA	27175-2_{3001..3894}	lnc-ZBED4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZBED4-2:1	chr22	 49949300	 49950193	+	lnc-ZBED4-2	lnc-ZBED4-2:1	ENSG00000212939.2	RP1-29C18.10	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90"	NA	inter
CUST_3976_PI429285431	5.8913283	P	6.8521485	P	0.513764745102024	0	lncRNA	3943-4_{9001..12000}	"transcript_id ""ENST00000501122.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000501122.2"" | genecode_v17"	chr11	 65199269	 65202268	+	ENSG00000245532.3	ENST00000501122.2	NEAT1	NEAT1-001	FRMD8	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr11:65180269-65180996"	NA	inter
LNCA_21_P0011423	0.9021459	A	0.8958221	A	1.0043929449576	0	lncRNA	TCONS_l2_00009664	NA	NA	NA	NA	XLOC_l2_005175	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005175), lincRNA [TCONS_l2_00009664]"	chr16:31056373-31056432	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00009664	TCONS_l2_00009664	chr16	 31056373	 31056432	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29570_PI429285431	1.0368297	A	0.9275448	A	1.07869342848634	0	lncRNA	31330-1_{1..346}	n333067|AF262299|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075452|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075452|1.2256200|-0.1642631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333067|AF262299|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075452|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075452|1.2256200|-0.1642631	chr3	 46283922	 46284267	+	NA	NA	NA	NA	CCR3	NA	chr3:46283872-46308197	inner
CUST_19762_PI429285431	5.45403	P	5.8083873	P	0.782218032463827	0	lncRNA	21420-1_{1..397}	lnc-C4orf37-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C4orf37-2:1	chr4	 99182703	 99183099	-	lnc-C4orf37-2	lnc-C4orf37-2:1	ENSG00000214559.3	RP11-323J4.1	RAP1GDS1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80chr4:99182527-99192781"	NA	inner
CUST_21131_PI429285431	1.4345192	A	1.216133	A	1.1634314428324	0	lncRNA	22757-1_{1..3000}	lnc-AC004223.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AC004223.1-1:1	chr17	 33332107	 33335106	+	lnc-AC004223.1-1	lnc-AC004223.1-1:1	ENSG00000224113.2	RP5-837J1.2	RFFL	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20chr17:33336131-33346762"	NA	inter
CUST_26881_PI429285431	0.9027627	A	0.9091286	A	0.99559721516332	0	lncRNA	28398-1_{1..1959}	n323956|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000106519|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000106519|-0.3831740|-0.3131442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n323956|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000106519|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000106519|-0.3831740|-0.3131442	chr9	131291199	131293157	+	NA	NA	NA	NA	SPTAN1	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60chr9:131314837-131317181"	NA	inner
CUST_43217_PI429285431	1.0749075	A	1.6740664	A	0.660138708108386	0	lncRNA	48031-1_{1..557}	ENST00000602601 havana:sense_intronic chromosome:GRCh37:12:124452570:124453126:-1 gene:ENSG00000269938 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602601 havana:sense_intronic chromosome:GRCh37:12:124452570:124453126:-1 gene:ENSG00000269938 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr12	124452570	124453126	-	ENSG00000269938	ENST00000602601	NA	NA	ZNF664-FAM101A	NA	chr12:124457762-124463126	inner
LNCA_21_P0007014	0.9008353	A	2.0393634	A	0.454222759082112	0	lncRNA	TCONS_00018590	NA	NA	NA	NA	XLOC_008927	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008927), lincRNA [TCONS_00018590]"	chr10:103503721-103503662	hs|10q24.32	Agilent_HUMAN_G3V2	TCONS_00018590	TCONS_00018590	chr10	103503662	103503721	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7660_PI429285431	5.783497	P	5.8046494	P	0.985445233312577	0	lncRNA	9292-1_{1..866}	lnc-CCPG1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCPG1-1:3	chr15	 55611062	 55611927	-	lnc-CCPG1-1	lnc-CCPG1-1:3	ENSG00000225973	AC018926.1	PIGB	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-21.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80chr15:55611133-55621243"	NA	inner
CUST_16308_PI429285431	5.258838	P	5.8178196	P	0.678781146997182	0	lncRNA	18014-1_{1..397}	lnc-FSIP1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FSIP1-4:1	chr15	 39811912	 39812308	-	lnc-FSIP1-4	lnc-FSIP1-4:1	XLOC_011437	linc-RASGRP1-3	NA	NA	NA	inter
CUST_3341_PI429285431	1.0807699	A	1.173553	A	0.937712064889593	0	lncRNA	3319-1_{1..485}	"transcript_id ""ENST00000519306.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519306.1"" | genecode_v17"	chr8	140108548	140109032	-	ENSG00000253432.1	ENST00000519306.1	RP11-324F11.1	RP11-324F11.1-001	NA	NA	NA	inter
CUST_23998_PI429285431	1.5019331	A	2.0041313	A	0.706030199849986	0	lncRNA	25552-1_{1..552}	lnc-COX7A2L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COX7A2L-1:1	chr2	 42397110	 42397661	-	lnc-COX7A2L-1	lnc-COX7A2L-1:1	ENSG00000224875.2	AC083949.1	EML4	NA	chr2:42396490-42407441	inner
CUST_2073_PI429285431	2.1130702	A	1.744834	A	1.29077380040061	0	lncRNA	2064-1_{1..295}	"transcript_id ""ENST00000511758.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511758.1"" | genecode_v17"	chr5	  7924405	  7924699	+	ENSG00000251168.1	ENST00000511758.1	CTD-2072I24.1	CTD-2072I24.1-001	NA	NA	NA	inter
CUST_16522_PI429285431	2.3068705	A	2.1790376	A	1.09265117556504	0	lncRNA	18222-1_{1..3000}	lnc-COL20A1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL20A1-3:2	chr20	 62033322	 62036321	+	lnc-COL20A1-3	lnc-COL20A1-3:2	XLOC_013612	linc-PPDPF-3	KCNQ2	NA	chr20:62037542-62044595	inter
CUST_9090_PI429285431	9.0414505	P	8.918366	P	1.08906080077939	0	lncRNA	10611-1_{1..1998}	lnc-ZNF484-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF484-1:1	chr9	 95605657	 95607654	-	lnc-ZNF484-1	lnc-ZNF484-1:1	ENSG00000248982	ENST00000511784	ZNF484	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70chr9:95603237-95615801"	NA	inter
CUST_36201_PI429285431	8.369068	P	8.085689	P	1.21704203697027	0	lncRNA	37459-2_{3001..3748}	n344748|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_297|NULL|-1.3401800|-0.1775181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344748|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_297|NULL|-1.3401800|-0.1775181	chr20	 37052229	 37052976	-	NA	NA	NA	NA	NA	"hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_47408_PI429285431	5.386395	P	5.9929314	P	0.65677157777688	0	lncRNA	51451-1_{1..2401}	"gi|334085235|ref|NR_038313.1| Homo sapiens ITGB2 antisense RNA 1 (ITGB2-AS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|334085235|ref|NR_038313.1| Homo sapiens ITGB2 antisense RNA 1 (ITGB2-AS1), transcript variant 3, non-coding RNA"	Chr21	 46340950	 46343350	+	100505746	NR_038313.1	NA	NA	NA	NA	NA	inter
CUST_3183_PI429285431	0.90550673	A	0.90462905	A	1.00060854650677	0	lncRNA	3163-1_{1..383}	"transcript_id ""ENST00000534723.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534723.1"" | genecode_v17"	chr8	 74640078	 74640460	+	ENSG00000254538.1	ENST00000534723.1	RP11-463D19.1	RP11-463D19.1-002	STAU2	NA	chr8:74630078-74655132	inner
CUST_7378_PI429285431	0.9096256	A	0.93311155	A	0.983852570359702	0	lncRNA	9025-1_{1..808}	lnc-ZNF644-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF644-1:4	chr1	 91317040	 91317847	-	lnc-ZNF644-1	lnc-ZNF644-1:4	ENSG00000233593	RP4-665J23.1	NA	NA	NA	inter
CUST_11004_PI429285431	0.88962126	A	0.9242581	A	0.976277481666866	0	lncRNA	12549-1_{1..2377}	lnc-NBPF15-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NBPF15-2:1	chr1	148352405	148354781	+	lnc-NBPF15-2	lnc-NBPF15-2:1	XLOC_000389	linc-NBPF15-2	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NBPF11:range=chr1:146034392-1460662415'pad=0,hg19_refFlat_NBPF11:range=chr1:146034392-1460662415'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NBPF11:range=chr1:147576173-1476080775'pad=0,hg19_refFlat_NBPF11:range=chr1:147576173-1476080775'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70"	NA	inter
CUST_44599_PI429285431	6.4501057	P	6.819986	P	0.773846699949791	0	lncRNA	49175-1_{1..1827}	"gi|223029487|ref|NR_026763.1| Homo sapiens SMAD5 antisense RNA 1 (SMAD5-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223029487|ref|NR_026763.1| Homo sapiens SMAD5 antisense RNA 1 (SMAD5-AS1), non-coding RNA"	Chr5	135465202	135467028	-	9597	NR_026763.1	NA	NA	NA	NA	NA	inter
CUST_22606_PI429285431	0.89840937	A	0.8992985	A	0.999383891919924	0	lncRNA	24191-1_{1..582}	lnc-LARS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LARS-1:1	chr5	145756278	145756859	-	lnc-LARS-1	lnc-LARS-1:1	ENSG00000250025.1	CTC-359M8.1	NA	NA	NA	inter
CUST_39875_PI429285431	2.8732162	P	3.9671254	P	0.468490208234509	0	lncRNA	40768-3_{6001..6814}	n406541|NR_024052_4|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_4||1.1295700|-0.2281621	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406541|NR_024052_4|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_4||1.1295700|-0.2281621	chr6	  1591164	  1591977	-	NA	NA	NA	NA	GMDS	"hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.24;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_FOXC1:range=chr6:1610681-16123425'pad=0,hg19_refFlat_FOXC1:range=chr6:1610681-16123425'pad=0 3'pad=0 strand=+ repeatMasking=none,-112.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20chr6:1624041-1634902"	NA	inner
CUST_54_PI429201921	0.9025972	A	0.9059969	A	0.997646281878959	0	lncRNA	55-1_{1..1633}	TC01004104.hg.1	TCONS_l2_00001928-XLOC_l2_000005 // Broad TUCP // linc-SAMD11-11 chr1:+:420205-421839 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:420205-421839	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00001928-XLOC_l2_000005	linc-SAMD11-11	chr1	   420205	   421839	+	NA	NA	NA	NA	TNFAIP2	NA	chr14:103592664-103599344	Unknown
CUST_5683_PI429285431	0.89593023	A	0.9022961	A	0.995597235866182	0	lncRNA	5607-1_{1..508}	"transcript_id ""ENST00000565822.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565822.1"" | genecode_v17"	chr16	 86679907	 86680414	+	ENSG00000261161.1	ENST00000565822.1	RP11-58A18.1	RP11-58A18.1-001	NA	NA	NA	inter
CUST_50471_PI429285431	7.206378	P	6.9639645	P	1.18297001021625	0	lncRNA	54171-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00030539 range=chrX:74959074-74966889 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030539 range=chrX:74959074-74966889 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 74962074	 74965073	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10"	NA	inter
CUST_48866_PI429285431	0.92106235	A	0.9233024	A	0.998448520448885	0	lncRNA	52702-1_{1..527}	hg19_lincRNAsTranscripts_TCONS_l2_00020087 range=chr3:15193350-15198825 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020087 range=chr3:15193350-15198825 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 15193350	 15193876	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13555_PI429285431	2.511664	A	3.8559134	P	0.393858850402593	0	lncRNA	15196-1_{1..587}	lnc-PIGF-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIGF-2:1	chr2	 46910457	 46911043	-	lnc-PIGF-2	lnc-PIGF-2:1	XLOC_002087	linc-PIGF-2	NA	NA	NA	inter
CUST_24598_PI429285431	0.9038118	A	0.90729904	A	0.997585748430472	0	lncRNA	26147-1_{1..421}	lnc-PTPN20C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PTPN20C-1:1	chr10	 49364136	 49364556	-	lnc-PTPN20C-1	lnc-PTPN20C-1:1	ENSG00000232462.1	RP11-13E1.5	FRMPD2	NA	chr10:49354136-49374177	inter
CUST_1546_PI429285431	0.8954144	A	1.0997658	A	0.867928798769737	0	lncRNA	1533-1_{1..661}	"transcript_id ""ENST00000475324.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000475324.1"" | genecode_v17"	chr3	167584423	167585083	+	ENSG00000240292.1	ENST00000475324.1	RP11-298O21.2	RP11-298O21.2-001	NA	NA	NA	inter
CUST_19_PI429201921	4.4978642	P	4.556312	P	0.960296749926115	0	lncRNA	20-1_{1..881}	TC19002366.hg.1	TCONS_l2_00012890-XLOC_l2_006940 // Broad TUCP // linc-CYP4F2 chr19:-:16013125-16014007 // chr19 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr19:-:16013125-16014007	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00012890-XLOC_l2_006940	linc-CYP4F2	chr19	 16013125	 16014007	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47659_PI429285431	5.4648304	P	3.590445	P	3.66645390043572	0	lncRNA	51642-2_{3001..4152}	"gi|297374780|ref|NR_033700.1| Homo sapiens fragile X mental retardation 1 (FMR1), transcript variant ISO10, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|297374780|ref|NR_033700.1| Homo sapiens fragile X mental retardation 1 (FMR1), transcript variant ISO10, non-coding RNA"	NW_004070890.2	  3439342	  3440493	+	2332	NR_033700.1	NA	NA	NA	NA	NA	Unknown
CUST_14268_PI429285431	0.9207413	A	1.0269232	A	0.929043529832067	0	lncRNA	15927-1_{1..687}	lnc-FGF20-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGF20-1:1	chr8	 16353302	 16353988	-	lnc-FGF20-1	lnc-FGF20-1:1	XLOC_007013	linc-MSR1-3	NA	NA	NA	inter
CUST_41617_PI429285431	6.550261	P	6.604111	P	0.963362051566749	0	lncRNA	42989-1_{1..94}	ENST00000577923 proj_ncrna:miRNA chromosome:GRCh37:HG1308_PATCH:130135952:130136045:1 gene:ENSG00000263487 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577923 proj_ncrna:miRNA chromosome:GRCh37:HG1308_PATCH:130135952:130136045:1 gene:ENSG00000263487 gene_biotype:miRNA transcript_biotype:miRNA	chrHG1308_PATCH	130135952	130136045	+	ENSG00000263487	ENST00000577923	NA	NA	NA	NA	NA	Unknown
CUST_17203_PI429285431	1.2369236	A	1.5393615	A	0.810880992201441	0	lncRNA	18916-2_{3001..4033}	lnc-TMED5-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TMED5-1:7	chr1	 93814281	 93815313	-	lnc-TMED5-1	lnc-TMED5-1:7	XLOC_000918	linc-TMED5	DR1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr1:93811478-93821368"	NA	inter
CUST_36597_PI429285431	8.936642	P	8.621152	P	1.24443424381251	0	lncRNA	37791-1_{1..2098}	n345094|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_643|NULL|-1.3330300|-0.2547609	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345094|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_643|NULL|-1.3330300|-0.2547609	chrX	103005853	103007950	-	NA	NA	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30"	NA	inter
CUST_42010_PI429285431	7.0271144	P	7.082121	P	0.962590039462304	0	lncRNA	43861-1_{1..95}	ENST00000385290 ncrna:miRNA chromosome:GRCh37:7:95848974:95849068:-1 gene:ENSG00000208025 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385290 ncrna:miRNA chromosome:GRCh37:7:95848974:95849068:-1 gene:ENSG00000208025 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 95848974	 95849068	-	ENSG00000208025	ENST00000385290	NA	NA	SLC25A13	NA	chr7:95838974-95859068	inter
CUST_50007_PI429285431	2.3685012	A	3.2542584	P	0.541203397039085	0	lncRNA	53744-1_{1..1468}	hg19_lincRNAsTranscripts_TCONS_l2_00028483 range=chr8:39172182-39274745 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028483 range=chr8:39172182-39274745 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 39172182	 39173649	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32323_PI429285431	3.6109097	P	3.9886174	P	0.769659532632435	0	lncRNA	34005-1_{1..1693}	n338901|CR618068|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1327|NULL|-1.0198900|-0.2071967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338901|CR618068|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1327|NULL|-1.0198900|-0.2071967	chr19	 50544348	 50546040	-	NA	NA	NA	NA	ZNF473	"hg19_refFlat_ZNF473:range=chr19:50534340-505503165'pad=0,hg19_refFlat_ZNF473:range=chr19:50534340-505503165'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.20chr19:50534348-50552033"	NA	inner
CUST_47478_PI429285431	0.9100772	A	0.91951305	A	0.993480909252919	0	lncRNA	51499-2_{3001..3691}	"gi|364023798|ref|NR_045648.1| Homo sapiens piwi-like 3 (Drosophila) (PIWIL3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|364023798|ref|NR_045648.1| Homo sapiens piwi-like 3 (Drosophila) (PIWIL3), transcript variant 3, non-coding RNA"	Chr22	 25118001	 25118691	-	440822	NR_045648.1	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80"	NA	inter
CUST_21648_PI429285431	7.303443	P	7.5524793	P	0.841458309882301	0	lncRNA	23260-1_{1..549}	lnc-SRGAP3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRGAP3-1:2	chr3	  9439983	  9440531	-	lnc-SRGAP3-1	lnc-SRGAP3-1:2	ENSG00000206573.4	RP11-58B17.1	LOC100652926	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr3:9435634-9438752"	NA	inner
CUST_42580_PI429285431	6.209597	P	6.744997	P	0.689967350606611	0	lncRNA	45419-1_{1..64}	ENST00000583861 ncrna:snoRNA chromosome:GRCh37:22:39715055:39715118:-1 gene:ENSG00000263764 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583861 ncrna:snoRNA chromosome:GRCh37:22:39715055:39715118:-1 gene:ENSG00000263764 gene_biotype:snoRNA transcript_biotype:snoRNA	chr22	 39715055	 39715118	-	ENSG00000263764	ENST00000583861	NA	NA	RPL3	NA	chr22:39708887-39715670	inner
CUST_19470_PI429285431	6.9190445	P	7.197045	P	0.824733262779264	0	lncRNA	21128-1_{1..3000}	lnc-ANKMY1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ANKMY1-2:1	chr2	241522117	241525116	-	lnc-ANKMY1-2	lnc-ANKMY1-2:1	ENSG00000260942.1	RP11-27M15.1	RNPEPL1	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10chr2:241512117-241518149"	NA	inter
CUST_42676_PI429285431	6.88284	P	7.4553957	P	0.672424548615012	0	lncRNA	45592-1_{1..141}	ENST00000364749 ncrna:snoRNA chromosome:GRCh37:1:179170622:179170762:1 gene:ENSG00000201619 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364749 ncrna:snoRNA chromosome:GRCh37:1:179170622:179170762:1 gene:ENSG00000201619 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	179170622	179170762	+	ENSG00000201619	ENST00000364749	NA	NA	ABL2	NA	chr1:179160622-179180762	inner
CUST_41546_PI429285431	6.2484493	P	6.288588	P	0.972561441333293	0	lncRNA	42829-1_{1..118}	ENST00000577331 ncrna:miRNA chromosome:GRCh37:15:68522010:68522127:1 gene:ENSG00000264779 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577331 ncrna:miRNA chromosome:GRCh37:15:68522010:68522127:1 gene:ENSG00000264779 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 68522010	 68522127	+	ENSG00000264779	ENST00000577331	NA	NA	CLN6	NA	chr15:68512010-68522080	inner
CUST_31457_PI429285431	2.0912414	A	1.3082088	A	1.7207441437474	0	lncRNA	33223-2_{3001..5203}	n337929|D83776|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|314|NULL|12.3272000|-0.3353218	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337929|D83776|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|314|NULL|12.3272000|-0.3353218	chr1	 52891956	 52894158	-	NA	NA	NA	NA	ZCCHC11	NA	chr1:52888947-53001570	inner
CUST_37977_PI429285431	11.03351	P	10.599889	P	1.35061922649913	0	lncRNA	39065-1_{1..690}	n346531|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2081|NULL|-1.2666700|-0.1860046	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346531|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2081|NULL|-1.2666700|-0.1860046	chr12	 31902348	 31903037	+	NA	NA	NA	NA	H3F3C	NA	chr12:31907570-31918213	inter
CUST_47084_PI429285431	1.8241252	A	0.8977119	A	1.90054515162911	0	lncRNA	51168-2_{3001..6000}	"gi|224591393|ref|NR_027130.1| Homo sapiens zinc finger protein 738 (ZNF738), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224591393|ref|NR_027130.1| Homo sapiens zinc finger protein 738 (ZNF738), non-coding RNA"	Chr19	 21544735	 21547734	+	148203	NR_027130.1	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ISCA1:range=chr9:88880958-888973735'pad=0,hg19_refFlat_ISCA1:range=chr9:88880958-888973735'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_50775_PI429285431	11.096859	P	11.011196	P	1.06117529942152	0	lncRNA	54432-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00004576 range=chr11:65266532-65273981 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004576 range=chr11:65266532-65273981 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65266532	 65269531	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46949_PI429285431	0.913054	A	0.9245909	A	0.992035119395588	0	lncRNA	51055-2_{3001..3699}	"gi|260898766|ref|NR_029376.1| Homo sapiens uncharacterized LOC100294362 (LOC100294362), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|260898766|ref|NR_029376.1| Homo sapiens uncharacterized LOC100294362 (LOC100294362), non-coding RNA"	Chr17	 78328630	 78329328	-	100294362	NR_029376.1	NA	NA	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_RNF213:range=chr17:78237481-783672985'pad=0,hg19_refFlat_RNF213:range=chr17:78237481-783672985'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70"	NA	inter
LNCA_33_P3379046	6.213052	P	6.846154	P	0.644788536514048	0	lncRNA	XR_112442	XR_112442	XR_112442	   729770	Hs.591612	LOC729770	uncharacterized LOC729770	NA	THC2608026	NA	"PREDICTED: Homo sapiens hypothetical LOC729770 (LOC729770), miscRNA [XR_112442]"	chr2:222439103-222439162	hs|2q36.1	Agilent_HUMAN_G3V2	XR_112442	XR_112442	chr2	222439103	222439162	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1541_PI429285431	8.105183	P	8.1721115	P	0.954668326351913	0	lncRNA	1528-1_{1..789}	"transcript_id ""ENST00000496403.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000496403.1"" | genecode_v17"	chr3	166552809	166553597	-	ENSG00000240033.1	ENST00000496403.1	RP11-12K11.2	RP11-12K11.2-001	NA	NA	NA	inter
CUST_37244_PI429285431	2.674766	A	3.254458	A	0.669106609268763	0	lncRNA	38351-1_{1..649}	n345675|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1224|NULL|-1.3114800|-0.3439579	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345675|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1224|NULL|-1.3114800|-0.3439579	chr3	158498436	158499084	-	NA	NA	NA	NA	MFSD1	NA	chr3:158519715-158520675	inter
CUST_45939_PI429285431	1.0111303	A	0.9133851	A	1.07009968725524	0	lncRNA	50241-2_{3001..3545}	"gi|310121804|ref|XR_110537.1| PREDICTED: Homo sapiens chromosome 11 open reading frame 44 (C11orf44), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310121804|ref|XR_110537.1| PREDICTED: Homo sapiens chromosome 11 open reading frame 44 (C11orf44), misc_RNA"	NA	NA	NA	NA	NA	XR_110537.1	NA	NA	NA	NA	NA	Unknown
CUST_10513_PI429285431	1.5188866	A	0.9067721	A	1.52849782571963	0	lncRNA	12040-1_{1..236}	lnc-PLAGL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLAGL2-2:1	chr20	 30694634	 30694869	-	lnc-PLAGL2-2	lnc-PLAGL2-2:1	XLOC_013720	linc-PDRG1	HCK	NA	chr20:30684634-30689659	inter
CUST_7129_PI429285431	0.91894335	A	0.9254901	A	0.99547241923185	0	lncRNA	7066-1_{1..587}	"transcript_id ""ENST00000444263.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444263.1"" | genecode_v17"	chrY	  2870953	  2871539	+	ENSG00000231535.1	ENST00000444263.1	LINC00278	LINC00278-002	NA	NA	NA	inter
CUST_44709_PI429285431	9.997285	P	10.469175	P	0.721019408617072	0	lncRNA	49264-1_{1..1592}	"gi|399124810|ref|NR_073065.1| Homo sapiens nurim (nuclear envelope membrane protein) (NRM), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|399124810|ref|NR_073065.1| Homo sapiens nurim (nuclear envelope membrane protein) (NRM), transcript variant 7, non-coding RNA"	NT_167248.1	  1948757	  1950348	-	11270	NR_073065.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008851	8.456053	P	8.320784	P	1.0982975795197	0	lncRNA	TCONS_00023714	NA	NA	NA	NA	XLOC_011515	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011515), lincRNA [TCONS_00023714]"	chr15:68777404-68777345	hs|15q23	Agilent_HUMAN_G3V2	TCONS_00023714	TCONS_00023714	chr15	 68777345	 68777404	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9762_PI429285431	3.170956	P	2.6197388	A	1.46532146444938	0	lncRNA	11279-1_{1..2869}	lnc-FIGNL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FIGNL1-1:1	chr7	 50518449	 50521317	-	lnc-FIGNL1-1	lnc-FIGNL1-1:1	XLOC_006441	linc-FIGNL1	DDC	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40chr7:50526134-50531151"	NA	inter
CUST_11848_PI429285431	2.7410407	A	1.3462428	A	2.62951713858116	0	lncRNA	13426-1_{1..3000}	lnc-FAM127A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM127A-1:1	chrX	134173057	134176056	+	lnc-FAM127A-1	lnc-FAM127A-1:1	XLOC_008072	linc-ZNF449-2	FAM127A	NA	chrX:134166333-134167576	inter
CUST_21082_PI429285431	0.9131937	A	0.90863365	A	1.00316578635132	0	lncRNA	22708-1_{1..3000}	lnc-EIF4E3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-EIF4E3-1:1	chr3	 71622646	 71625645	-	lnc-EIF4E3-1	lnc-EIF4E3-1:1	ENSG00000242094.1	FOXP1-IT1	FOXP1	NA	chr3:71612646-71633140	inner
CUST_49652_PI429285431	6.2677155	P	6.2151084	P	1.03713744665342	0	lncRNA	53435-1_{1..706}	hg19_lincRNAsTranscripts_TCONS_l2_00026654 range=chr7:65915069-65952961 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026654 range=chr7:65915069-65952961 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 65915069	 65915774	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47201_PI429285431	6.184545	P	5.2611084	P	1.89662781621064	0	lncRNA	51276-1_{1..2788}	"gi|388240797|ref|NR_049752.1| Homo sapiens zinc finger protein 211 (ZNF211), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388240797|ref|NR_049752.1| Homo sapiens zinc finger protein 211 (ZNF211), transcript variant 7, non-coding RNA"	Chr19	 58144535	 58147322	+	10520	NR_049752.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008278	0.9165802	A	0.915728	A	1.00059087452489	0	lncRNA	ENST00000555539	XR_110222	XR_110222	NA	Hs.569330	XLOC_011072	NA	ENST00000555539	THC2657623	NA	"PREDICTED: Homo sapiens hypothetical LOC100506498 (LOC100506498), miscRNA [XR_110222]"	chr14:74290072-74290013	hs|14q24.3	Agilent_HUMAN_G3V2	ENST00000555539	ENST00000555539	chr14	 74290013	 74290072	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48377_PI429285431	4.0814543	P	3.921822	P	1.11700241114119	0	lncRNA	52230-1_{1..891}	hg19_lincRNAsTranscripts_TCONS_l2_00000436 range=chr1:98654035-98675034 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000436 range=chr1:98654035-98675034 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 98654035	 98654925	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26451_PI429285431	0.8951037	A	0.89376664	A	1.00092720896194	0	lncRNA	27959-1_{1..722}	lnc-OR2G3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR2G3-1:3	chr1	247826805	247827526	+	lnc-OR2G3-1	lnc-OR2G3-1:3	ENSG00000235749.2	RP11-634B7.4	OR13G1	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SSH1:range=chr12:109185876-1092512725'pad=0,hg19_refFlat_SSH1:range=chr12:109185876-1092512725'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SSH1:range=chr12:109185876-1092211815'pad=0,hg19_refFlat_SSH1:range=chr12:109185876-1092211815'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20chr1:247835420-247836343"	NA	inter
CUST_10195_PI429285431	9.532613	P	9.688233	P	0.897746482296693	0	lncRNA	11720-1_{1..478}	lnc-FBXO15-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXO15-4:1	chr18	 71267114	 71267591	-	lnc-FBXO15-4	lnc-FBXO15-4:1	XLOC_012880	linc-NETO1-2	NA	NA	NA	inter
CUST_16952_PI429285431	1.1776245	A	1.7193371	A	0.686954951724073	0	lncRNA	18664-1_{1..2928}	lnc-SALL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SALL3-1:1	chr18	 76556954	 76559881	+	lnc-SALL3-1	lnc-SALL3-1:1	XLOC_012733	linc-SALL3-1	NA	NA	NA	inter
CUST_51301_PI429285431	4.7868423	P	4.6359625	P	1.11024632816881	0	lncRNA	54905-1_{1..866}	hg19_lincRNAsTranscripts_TCONS_l2_00008540 range=chr15:32828909-32887699 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008540 range=chr15:32828909-32887699 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 32828909	 32829774	+	NA	NA	NA	NA	LOC643699	"hg19_refFlat_WHAMM:range=chr15:83478479-835022885'pad=0,hg19_refFlat_WHAMM:range=chr15:83478479-835022885'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.30chr15:32885755-32896179"	NA	inter
LNCA_21_P0005725	0.9118041	A	0.90839577	A	1.0023652671713	0	lncRNA	TCONS_00014766	NA	NA	NA	NA	XLOC_006849	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006849), lincRNA [TCONS_00014766]"	chr8:76851968-76863780	hs|8q21.11	Agilent_HUMAN_G3V2	TCONS_00014766	TCONS_00014766	chr8	 76851968	 76863780	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9990_PI429285431	1.3464378	A	1.3921229	A	0.96882963457717	0	lncRNA	11516-1_{1..653}	lnc-FMN1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FMN1-2:4	chr15	 33534436	 33535088	-	lnc-FMN1-2	lnc-FMN1-2:4	XLOC_011417	linc-FMN1-4	LOC100652857	NA	chr15:33533735-33538807	inter
CUST_39672_PI429285431	2.058291	A	2.9464827	A	0.540290904385606	0	lncRNA	40612-1_{1..805}	n405301|NR_001435_2|lncRNA|Homosapiens||RefGeneNoncode|NR_001435_2||-1.2939300|-0.4827880	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405301|NR_001435_2|lncRNA|Homosapiens||RefGeneNoncode|NR_001435_2||-1.2939300|-0.4827880	chr6	  4312747	  4313551	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19611_PI429285431	1.2002517	A	0.90669996	A	1.22565397774662	0	lncRNA	21267-1_{1..508}	lnc-PPP2R2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PPP2R2A-1:1	chr8	 26281195	 26281702	+	lnc-PPP2R2A-1	lnc-PPP2R2A-1:1	ENSG00000253430.1	RP11-14I17.2	NA	"hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40"	NA	inter
LNCA_21_P0012123	1.090253	A	1.446303	A	0.781300801880689	0	lncRNA	XR_109599	XR_109599	XR_109599	NA	Hs.559348	LOC100505663	uncharacterized LOC100505663	ENST00000445606	THC2675378	NA	"PREDICTED: Homo sapiens hypothetical LOC100505663, transcript variant 1 (LOC100505663), miscRNA [XR_109599]"	chr20:38636834-38636893	hs|20q12	Agilent_HUMAN_G3V2	XR_109599	XR_109599	chr20	 38636834	 38636893	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33140_PI429285431	6.2189283	P	6.505382	P	0.819915023053859	0	lncRNA	34736-1_{1..2610}	n339829|AK074776|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2276|NULL|1.4096500|-0.2489605	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339829|AK074776|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2276|NULL|1.4096500|-0.2489605	chr4	  6672455	  6675064	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10"	NA	inter
CUST_10293_PI429285431	0.9129641	A	0.90129864	A	1.00811865973188	0	lncRNA	11820-1_{1..517}	lnc-ACBD5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACBD5-2:2	chr10	 27596292	 27596808	-	lnc-ACBD5-2	lnc-ACBD5-2:2	XLOC_008759	linc-ACBD5-3	NA	NA	NA	inter
LNCA_21_P0006214	0.90545225	A	0.9002798	A	1.00359170389929	0	lncRNA	TCONS_00016137	NA	NA	NA	NA	XLOC_007530	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007530), lincRNA [TCONS_00016137]"	chr9:118365905-118365964	hs|9q33.1	Agilent_HUMAN_G3V2	TCONS_00016137	TCONS_00016137	chr9	118365905	118365964	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3194_PI429285431	0.9116946	A	0.90873605	A	1.00205281473609	0	lncRNA	3173-1_{1..558}	"transcript_id ""ENST00000521879.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521879.1"" | genecode_v17"	chr8	 79060336	 79060893	+	ENSG00000254001.1	ENST00000521879.1	RP11-91P17.1	RP11-91P17.1-002	NA	NA	NA	inter
CUST_11402_PI429285431	1.2241545	A	1.1504682	A	1.05240229518892	0	lncRNA	12968-1_{1..369}	lnc-RTN4IP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RTN4IP1-1:2	chr6	106939411	106939779	-	lnc-RTN4IP1-1	lnc-RTN4IP1-1:2	XLOC_005798	linc-ATG5-2	NA	NA	NA	inter
CUST_40290_PI429285431	3.0877643	P	1.2647599	A	3.53817253219669	0	lncRNA	41094-2_{3001..3152}	n408238|NR_028402|lncRNA|Homosapiens||RefGeneNoncode|NR_028402||11.8013000|-0.2415566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408238|NR_028402|lncRNA|Homosapiens||RefGeneNoncode|NR_028402||11.8013000|-0.2415566	chr20	 18128742	 18128893	+	NA	NA	NA	NA	PET117	NA	chr20:18118499-18123813	inter
CUST_18305_PI429285431	7.568155	P	7.514868	P	1.0376263344047	0	lncRNA	20035-1_{1..3000}	lnc-TUBGCP2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUBGCP2-1:3	chr10	135090276	135093275	-	lnc-TUBGCP2-1	lnc-TUBGCP2-1:3	ENSG00000151651	ADAM8	ADAM8	NA	chr10:135080276-135090407	inner
CUST_12158_PI429285431	4.164027	P	3.7502217	A	1.33219502557292	0	lncRNA	13756-3_{6001..8014}	lnc-TPM4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TPM4-2:2	chr19	 16141931	 16143944	+	lnc-TPM4-2	lnc-TPM4-2:2	XLOC_012983	linc-TPM4-2	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20"	NA	inter
CUST_38607_PI429285431	5.5355387	P	5.3316655	P	1.15178640616954	0	lncRNA	39613-1_{1..2044}	n383727|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tmi.1||-0.4862480|-0.1784094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383727|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tmi.1||-0.4862480|-0.1784094	chr2	120975046	120977089	-	NA	NA	NA	NA	TMEM185B	NA	chr2:120972914-120980984	inner
CUST_6510_PI429285431	3.438168	P	3.7777505	P	0.790269974171979	0	lncRNA	6452-1_{1..502}	"transcript_id ""ENST00000433142.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433142.2"" | genecode_v17"	chr19	 38324008	 38324509	-	ENSG00000225868.2	ENST00000433142.2	AC016582.2	AC016582.2-002	NA	NA	NA	inter
LNCA_21_P0011229	0.9008287	A	1.6775501	A	0.583691757211299	0	lncRNA	XR_132731	XR_132731	XR_132731	NA	Hs.539702	LINC00371	long intergenic non-protein coding RNA 371	ENST00000433280	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC647166 (LOC647166), miscRNA [XR_132731]"	chr13:51684942-51662163	hs|13q14.3	Agilent_HUMAN_G3V2	XR_132731	XR_132731	chr13	 51662163	 51684942	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50572_PI429285431	7.1753416	P	6.848582	P	1.25419319765669	0	lncRNA	54265-1_{1..247}	hg19_lincRNAsTranscripts_TCONS_l2_00030913 range=chrY:26288535-26292234 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030913 range=chrY:26288535-26292234 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrY	 26288535	 26288781	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27542_PI429285431	2.7128074	A	1.6256872	A	2.124495370692	0	lncRNA	29117-1_{1..788}	n324726|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319431|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319431|-1.0392800|-0.2682236	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324726|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319431|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319431|-1.0392800|-0.2682236	chr22	 18759275	 18760062	+	NA	NA	NA	NA	NA	"hg19_refFlat_TBC1D29:range=chr17:28886733-288904435'pad=0,hg19_refFlat_TBC1D29:range=chr17:28886733-288904435'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	inter
CUST_42145_PI429285431	1.2506541	A	2.696614	A	0.367047861036161	0	lncRNA	44171-1_{1..84}	ENST00000384962 ncrna:miRNA chromosome:GRCh37:15:79502130:79502213:1 gene:ENSG00000207695 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384962 ncrna:miRNA chromosome:GRCh37:15:79502130:79502213:1 gene:ENSG00000207695 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 79502130	 79502213	+	ENSG00000207695	ENST00000384962	NA	NA	NA	NA	NA	inter
LNCA_21_P0012672	1.7203783	A	1.0651673	A	1.57484626394831	0	lncRNA	TCONS_l2_00021193	NA	NA	NA	NA	XLOC_l2_011173	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011173), lincRNA [TCONS_l2_00021193]"	chr4:82722691-82722632	hs|4q21.22	Agilent_HUMAN_G3V2	TCONS_l2_00021193	TCONS_l2_00021193	chr4	 82722632	 82722691	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8584_PI429285431	4.4184036	P	5.053625	P	0.643842001385887	0	lncRNA	10140-1_{1..3000}	lnc-AC003682.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC003682.1-2:1	chr19	 58073476	 58076475	-	lnc-AC003682.1-2	lnc-AC003682.1-2:1	ENSG00000247474	ENST00000499896	ZNF550	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90chr19:58063476-58067725"	NA	inter
CUST_3892_PI429285431	2.5471387	A	2.309699	A	1.17889865404127	0	lncRNA	3861-1_{1..747}	"transcript_id ""ENST00000524707.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524707.1"" | genecode_v17"	chr11	 28538379	 28539125	+	ENSG00000254606.1	ENST00000524707.1	RP11-22P4.2	RP11-22P4.2-001	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-28.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
CUST_46651_PI429285431	2.5513852	A	2.4280689	A	1.08923579588775	0	lncRNA	50824-1_{1..848}	"gi|397139898|ref|XR_158900.1| PREDICTED: Homo sapiens uncharacterized LOC100996353 (LOC100996353), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139898|ref|XR_158900.1| PREDICTED: Homo sapiens uncharacterized LOC100996353 (LOC100996353), misc_RNA"	NA	NA	NA	NA	NA	XR_158900.1	NA	NA	NA	NA	NA	Unknown
CUST_36051_PI429285431	2.8865411	P	3.0679083	P	0.88186688065747	0	lncRNA	37366-2_{3001..4916}	n344647|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_195|NULL|-1.2743400|-0.3099453	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344647|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_195|NULL|-1.2743400|-0.3099453	chr11	 27623890	 27625805	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30"	NA	inter
CUST_41318_PI429285431	3.604568	P	3.6121757	P	0.994740623400931	0	lncRNA	42355-1_{1..76}	ENST00000584535 ncrna:miRNA chromosome:GRCh37:17:78393218:78393293:1 gene:ENSG00000264961 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584535 ncrna:miRNA chromosome:GRCh37:17:78393218:78393293:1 gene:ENSG00000264961 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 78393218	 78393293	+	ENSG00000264961	ENST00000584535	NA	NA	ENDOV	NA	chr17:78388967-78403293	inner
CUST_34150_PI429285431	4.117964	P	4.6046014	P	0.71368660486176	0	lncRNA	35668-1_{1..2042}	n340992|BC044947|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3458|NULL|-0.8807480|-0.2045356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340992|BC044947|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3458|NULL|-0.8807480|-0.2045356	chr6	 33599093	 33601134	-	NA	NA	NA	NA	ITPR3	NA	chr6:33589156-33611413	inner
CUST_45973_PI429285431	1.565573	A	2.7267828	A	0.447137422420361	0	lncRNA	50265-1_{1..682}	"gi|212286169|ref|NR_024420.1| Homo sapiens uncharacterized LOC389634 (LOC389634), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|212286169|ref|NR_024420.1| Homo sapiens uncharacterized LOC389634 (LOC389634), non-coding RNA"	Chr12	  8509559	  8510240	-	389634	NR_024420.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0005882	5.9549317	P	6.512678	P	0.679362598661934	0	lncRNA	TCONS_00015131	NA	NA	NA	NA	XLOC_007178	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007178), lincRNA [TCONS_00015131]"	chr8:105331085-105318871	hs|8q22.3	Agilent_HUMAN_G3V2	TCONS_00015131	TCONS_00015131	chr8	105318871	105331085	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38274_PI429285431	0.90115476	A	0.8936847	A	1.00519127926471	0	lncRNA	39329-1_{1..1826}	n381863|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001rop.2||-0.0563513|-0.2812413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381863|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001rop.2||-0.0563513|-0.2812413	chr12	 46051607	 46053432	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50"	NA	inter
CUST_6034_PI429285431	0.9013469	A	0.9025511	A	0.999165660420159	0	lncRNA	5960-1_{1..508}	"transcript_id ""ENST00000579835.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579835.1"" | genecode_v17"	chr18	   976698	   977205	+	ENSG00000263551.1	ENST00000579835.1	RP11-78F17.1	RP11-78F17.1-004	NA	NA	NA	inter
LNCA_21_P0013157	3.1454868	P	3.0368338	P	1.0782210645398	0	lncRNA	ENST00000412602	NA	NA	NA	NA	XLOC_l2_013125	NA	ENST00000412602	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013125), lincRNA [TCONS_l2_00025481]"	chr6:134927523-134927464	hs|6q23.2	Agilent_HUMAN_G3V2	ENST00000412602	ENST00000412602	chr6	134927464	134927523	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9535_PI429285431	1.6092018	A	0.8916426	A	1.64439763259728	0	lncRNA	11047-1_{1..698}	lnc-NFIL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NFIL3-1:1	chr9	 94249314	 94250011	-	lnc-NFIL3-1	lnc-NFIL3-1:1	XLOC_007777	linc-NFIL3	NA	NA	NA	inter
CUST_26998_PI429285431	2.8654308	A	1.8515435	A	2.01934484248296	0	lncRNA	28527-1_{1..957}	n324101|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000037044|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000037044|-1.1268500|-0.3757490	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324101|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000037044|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000037044|-1.1268500|-0.3757490	chr9	 43134975	 43135931	-	NA	NA	NA	NA	ANKRD20A3	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60chr9:43124975-43133544"	NA	inter
CUST_51101_PI429285431	6.521776	P	6.981346	P	0.727202971599016	0	lncRNA	54740-1_{1..899}	hg19_lincRNAsTranscripts_TCONS_l2_00007245 range=chr13:66361700-66362844 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007245 range=chr13:66361700-66362844 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 66361700	 66362598	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27740_PI429285431	6.1670985	P	6.2383976	P	0.951780564588693	0	lncRNA	29322-1_{1..539}	n324957|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079682|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079682|-1.0179700|-0.3994706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324957|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079682|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079682|-1.0179700|-0.3994706	chr20	 48317442	 48317980	+	NA	NA	NA	NA	B4GALT5	NA	chr20:48307442-48330421	inner
CUST_51900_PI429285431	3.9319658	P	4.481367	P	0.683303679183513	0	lncRNA	55445-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00013243 range=chr19:56124972-56128560 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013243 range=chr19:56124972-56128560 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 56124972	 56127971	-	NA	NA	NA	NA	ZNF784	"hg19_refFlat_ZNF213:range=chr16:3187282-31913485'pad=0,hg19_refFlat_ZNF213:range=chr16:3187282-31913485'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.30;hg19_refFlat_ZNF205:range=chr16:3163432-31703265'pad=0,hg19_refFlat_ZNF205:range=chr16:3163432-31703265'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_ZNF865:range=chr19:56124985-561281645'pad=0,hg19_refFlat_ZNF865:range=chr19:56124985-561281645'pad=0 3'pad=0 strand=+ repeatMasking=none,-115.50chr19:56132107-56135941"	NA	inner
CUST_24005_PI429285431	7.507312	P	6.4982753	P	2.01256684302909	0	lncRNA	25558-2_{3001..3981}	lnc-C17orf84-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-C17orf84-1:2	chr17	 17094982	 17095962	+	lnc-C17orf84-1	lnc-C17orf84-1:2	ENSG00000259850.1	RP11-45M22.1	MPRIP	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr17:17081982-17095962"	NA	inner
CUST_14051_PI429285431	0.90658176	A	0.90807414	A	0.998966095858249	0	lncRNA	15697-1_{1..338}	lnc-TNFSF11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFSF11-1:1	chr13	 43059605	 43059942	+	lnc-TNFSF11-1	lnc-TNFSF11-1:1	XLOC_010364	linc-TNFSF11	NA	NA	NA	inter
CUST_40118_PI429285431	3.9755008	P	2.1587281	A	3.52292240806247	0	lncRNA	40961-2_{3001..4953}	n407638|NR_027107|lncRNA|Homosapiens||RefGeneNoncode|NR_027107||3.8007500|-0.2611009	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n407638|NR_027107|lncRNA|Homosapiens||RefGeneNoncode|NR_027107||3.8007500|-0.2611009	chr4	183063158	183065110	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10360_PI429285431	0.8987986	A	0.89479244	A	1.00278071755164	0	lncRNA	11885-1_{1..882}	lnc-PTPRD-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPRD-5:1	chr9	 11834674	 11835555	-	lnc-PTPRD-5	lnc-PTPRD-5:1	XLOC_007647	linc-PTPRD-4	NA	NA	NA	inter
CUST_638_PI429285431	1.1352932	A	1.4689785	A	0.793506914689405	0	lncRNA	630-1_{1..798}	"transcript_id ""ENST00000586715.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586715.1"" | genecode_v17"	chr2	   310296	   311093	-	ENSG00000235779.2	ENST00000586715.1	AC079779.5	AC079779.5-022	NA	NA	NA	inter
LNCA_21_P0003114	10.159511	P	10.638321	P	0.717569263491988	0	lncRNA	XR_110050	XR_110050	XR_110050	NA	Hs.131918	LOC100506301	uncharacterized LOC100506301	ENST00000416124	THC2610265	NA	"PREDICTED: Homo sapiens hypothetical LOC100506301 (LOC100506301), miscRNA [XR_110050]"	chr3:44462684-44462625	hs|3p21.31	Agilent_HUMAN_G3V2	XR_110050	XR_110050	chr3	 44462625	 44462684	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44585_PI429285431	7.785147	P	7.7740903	P	1.00769336343771	0	lncRNA	49165-1_{1..625}	"gi|208022627|ref|NR_000039.2| Homo sapiens RAB9B, member RAS oncogene family pseudogene 1 (RAB9BP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|208022627|ref|NR_000039.2| Homo sapiens RAB9B, member RAS oncogene family pseudogene 1 (RAB9BP1), non-coding RNA"	Chr5	104435175	104435799	+	9366	NR_000039.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0009496	1.0788486	A	0.90784305	A	1.12584291720881	0	lncRNA	TCONS_00026358	NA	NA	NA	NA	XLOC_012710	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012710), lincRNA [TCONS_00026358]"	chr18:68437876-68437935	hs|18q22.2	Agilent_HUMAN_G3V2	TCONS_00026358	TCONS_00026358	chr18	 68437876	 68437935	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35689_PI429285431	9.818416	P	10.133147	P	0.804000888033251	0	lncRNA	37108-2_{3001..4039}	n342849|BX537506|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5352|NULL|-0.7563660|-0.2311478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342849|BX537506|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5352|NULL|-0.7563660|-0.2311478	chr8	134470095	134471133	-	NA	NA	NA	NA	ST3GAL1	NA	chr8:134467091-134481107	inner
CUST_17474_PI429285431	0.9017881	A	1.3900571	A	0.712879925128248	0	lncRNA	19200-1_{1..395}	lnc-BMP4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BMP4-2:1	chr14	 54654948	 54655342	-	lnc-BMP4-2	lnc-BMP4-2:1	XLOC_011029	linc-BMP4-1	NA	NA	NA	inter
CUST_40947_PI429285431	0.9031348	A	0.9103184	A	0.995033084038602	0	lncRNA	41626-1_{1..2642}	n410928|NR_038390|lncRNA|Homosapiens||RefGeneNoncode|NR_038390||0.7421070|-0.2455649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410928|NR_038390|lncRNA|Homosapiens||RefGeneNoncode|NR_038390||0.7421070|-0.2455649	chr11	102654406	102657047	+	NA	NA	NA	NA	MMP1	"hg19_refFlat_MMP1:range=chr11:102661143-1026681385'pad=0,hg19_refFlat_MMP1:range=chr11:102661143-1026681385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_MMP1:range=chr11:102661143-1026688235'pad=0,hg19_refFlat_MMP1:range=chr11:102661143-1026688235'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80chr11:102660641-102668966"	NA	inner
CUST_19078_PI429285431	0.9176336	A	0.9141805	A	1.00239637325266	0	lncRNA	20769-1_{1..479}	lnc-AC114783.1.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC114783.1.1-1:5	chr2	127659445	127659923	+	lnc-AC114783.1.1-1	lnc-AC114783.1.1-1:5	ENSG00000237524	AC114783.1	LOC339760	NA	chr2:127649445-127659013	inter
CUST_46607_PI429285431	4.91461	P	4.269367	P	1.56400269649929	0	lncRNA	50786-1_{1..1628}	"gi|213688421|ref|NR_003370.2| Homo sapiens RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1 (RRN3P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|213688421|ref|NR_003370.2| Homo sapiens RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1 (RRN3P1), non-coding RNA"	Chr16	 21807951	 21809578	-	730092	NR_003370.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0002196	1.0820916	A	0.91726494	A	1.12103137786821	0	lncRNA	THC2703558	NA	NA	NA	NA	XLOC_001418	NA	NA	THC2703558	NA	"BROAD Institute lincRNA (XLOC_001418), lincRNA [TCONS_00003627]"	NA	NA	Agilent_HUMAN_G3V2	THC2703558	THC2703558	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6400_PI429285431	2.6240041	A	3.5232549	P	0.536165092663201	0	lncRNA	6336-1_{1..798}	"transcript_id ""ENST00000593573.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593573.1"" | genecode_v17"	chr19	 23583786	 23584583	-	ENSG00000269416.1	ENST00000593573.1	CTB-175P5.4	CTB-175P5.4-005	ZNF91	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50chr19:23573786-23578269"	NA	inter
CUST_15463_PI429285431	0.9000403	A	1.1031889	A	0.868652707862092	0	lncRNA	17151-1_{1..1094}	lnc-PITRM1-7:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PITRM1-7:4	chr10	  2543813	  2544906	-	lnc-PITRM1-7	lnc-PITRM1-7:4	XLOC_008688	linc-ADARB2-5	NA	NA	NA	inter
CUST_30513_PI429285431	9.165737	P	8.482659	P	1.60556158054302	0	lncRNA	32293-1_{1..996}	n335670|CR614528|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000293723|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000293723|-0.3977800|-0.3700543	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335670|CR614528|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000293723|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000293723|-0.3977800|-0.3700543	chr2	101885763	101886758	+	NA	NA	NA	NA	RNF149	NA	chr2:101892063-101896759	inner
CUST_11291_PI429285431	0.8923723	A	0.9072964	A	0.989708723493849	0	lncRNA	12852-1_{1..305}	lnc-FRG2C-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRG2C-4:1	chr3	 75289336	 75289640	+	lnc-FRG2C-4	lnc-FRG2C-4:1	XLOC_002709	linc-FRG2C-4	NA	NA	NA	inter
CUST_8802_PI429285431	0.89410645	A	2.2657318	A	0.386455619523232	0	lncRNA	10343-1_{1..468}	lnc-NKX6-1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NKX6-1-2:3	chr4	 85070372	 85070839	-	lnc-NKX6-1-2	lnc-NKX6-1-2:3	ENSG00000250546	RP11-8L2.1	NA	NA	NA	inter
CUST_22132_PI429285431	0.895883	A	0.89888906	A	0.997918527261501	0	lncRNA	23734-1_{1..579}	lnc-ODF4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ODF4-2:2	chr17	  8279040	  8279618	+	lnc-ODF4-2	lnc-ODF4-2:2	ENSG00000265749.1	RP11-849F2.5	KRBA2	NA	chr17:8271973-8274858	inter
LNCA_21_P0005981	2.7577817	A	2.588792	A	1.12427089711238	0	lncRNA	TCONS_00015543	NA	NA	NA	NA	XLOC_007253	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007253), lincRNA [TCONS_00015543]"	chr8:144716955-144716896	hs|8q24.3	Agilent_HUMAN_G3V2	TCONS_00015543	TCONS_00015543	chr8	144716896	144716955	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5575_PI429285431	3.305488	P	3.3404293	P	0.976071474110167	0	lncRNA	5504-1_{1..561}	"transcript_id ""ENST00000568932.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568932.1"" | genecode_v17"	chr16	 63348168	 63348728	-	ENSG00000260658.1	ENST00000568932.1	RP11-368L12.1	RP11-368L12.1-003	NA	NA	NA	inter
LNCA_23_P33558	8.429938	P	8.775539	P	0.786980066971655	0	lncRNA	XR_109936	XR_109936	XR_109936	   729164	Hs.610958	LOC729164	hCG1732469	NA	THC2487293	NA	"PREDICTED: Homo sapiens hCG1732469 (LOC729164), miscRNA [XR_109936]"	chr2:109960662-109960603	hs|2q12.3	Agilent_HUMAN_G3V2	XR_109936	XR_109936	chr2	109960603	109960662	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19643_PI429285431	1.3626623	A	0.9208332	A	1.35832536935275	0	lncRNA	21299-1_{1..2597}	lnc-SNN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNN-1:1	chr16	 11835766	 11838362	+	lnc-SNN-1	lnc-SNN-1:1	ENSG00000262420.1	RP11-490O6.2	TXNDC11	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TXNDC11:range=chr16:11773051-118365865'pad=0,hg19_refFlat_TXNDC11:range=chr16:11773051-118365865'pad=0 3'pad=0 strand=- repeatMasking=none,-110.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr16:11825766-11836648"	NA	inner
CUST_25550_PI429285431	1.1400286	A	1.3354882	A	0.873294645734709	0	lncRNA	27079-1_{1..357}	lnc-HSPA14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSPA14-1:1	chr10	 14703559	 14703915	+	lnc-HSPA14-1	lnc-HSPA14-1:1	ENSG00000236495.1	RP11-7C6.1	FAM107B	NA	chr10:14693559-14713690	inner
CUST_6668_PI429285431	1.0532442	A	0.9030432	A	1.10972407092234	0	lncRNA	6614-1_{1..436}	"transcript_id ""ENST00000450971.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450971.1"" | genecode_v17"	chr20	 23635862	 23636297	-	ENSG00000225056.1	ENST00000450971.1	RP11-218C14.5	RP11-218C14.5-001	NA	NA	NA	inter
CUST_13517_PI429285431	6.9205494	P	7.3015165	P	0.767922646775808	0	lncRNA	15157-1_{1..795}	lnc-KLF6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF6-2:1	chr10	  3922189	  3922983	-	lnc-KLF6-2	lnc-KLF6-2:1	XLOC_008698	linc-KLF6-7	NA	NA	NA	inter
CUST_30349_PI429285431	4.1900992	P	4.4688945	P	0.824279031323184	0	lncRNA	32125-1_{1..664}	n335432|AY671780|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257063|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257063|-0.9867100|-0.2171253	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335432|AY671780|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257063|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257063|-0.9867100|-0.2171253	chr14	106322051	106322714	+	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106859077	inter
CUST_28385_PI429285431	3.3333225	P	3.2059655	P	1.09229080353597	0	lncRNA	30037-1_{1..821}	n325700|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045228|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045228|-1.1752900|-0.4692862	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325700|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045228|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045228|-1.1752900|-0.4692862	chr13	 68783465	 68784285	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18250_PI429285431	0.90565085	A	1.1082063	A	0.86900991938068	0	lncRNA	19984-1_{1..1948}	lnc-ANTXRL-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANTXRL-1:4	chr10	 47701239	 47703186	+	lnc-ANTXRL-1	lnc-ANTXRL-1:4	ENSG00000198250	ANTXRL	NA	NA	NA	inter
CUST_21891_PI429285431	0.8967829	A	1.1189775	A	0.857260396031053	0	lncRNA	23500-1_{1..258}	lnc-ASB2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASB2-2:1	chr14	 94393261	 94393518	-	lnc-ASB2-2	lnc-ASB2-2:1	ENSG00000258584.1	FAM181A-AS1	FAM181A	"hg19_refFlat_FAM181A:range=chr14:94391618-943955105'pad=0,hg19_refFlat_FAM181A:range=chr14:94391618-943955105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60chr14:94385240-94395954"	NA	inner
CUST_44149_PI429285431	4.7098227	P	4.2877007	P	1.33989690462006	0	lncRNA	48811-1_{1..2144}	"gi|310119187|ref|XR_110049.1| PREDICTED: Homo sapiens KRBOX1 antisense RNA 1 (KRBOX1-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310119187|ref|XR_110049.1| PREDICTED: Homo sapiens KRBOX1 antisense RNA 1 (KRBOX1-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_110049.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003755	3.9988766	P	3.6198425	P	1.3004708845297	0	lncRNA	TCONS_00008548	NA	NA	NA	NA	XLOC_004045	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004045), lincRNA [TCONS_00008548]"	chr4:111931495-111923447	hs|4q25	Agilent_HUMAN_G3V2	TCONS_00008548	TCONS_00008548	chr4	111923447	111931495	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32397_PI429285431	1.5518348	A	2.0257452	A	0.720010374824027	0	lncRNA	34073-1_{1..2548}	n338988|AK126410|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1416|NULL|-1.1930700|-0.3828134	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338988|AK126410|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1416|NULL|-1.1930700|-0.3828134	chr2	160626483	160629030	+	NA	NA	NA	NA	LY75-CD302	"hg19_refFlat_CD302:range=chr2:160628362-1606547095'pad=0,hg19_refFlat_CD302:range=chr2:160628362-1606547095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_LY75-CD302:range=chr2:160628362-1607611935'pad=0,hg19_refFlat_LY75-CD302:range=chr2:160628362-1607611935'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20chr2:160625139-160639028"	NA	inner
LNCA_21_P0011607	0.91596335	A	2.507886	A	0.331729070304859	0	lncRNA	TCONS_l2_00011427	NA	NA	NA	NA	XLOC_l2_006173	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006173), lincRNA [TCONS_l2_00011427]"	chr17:66117867-66117808	hs|17q24.2	Agilent_HUMAN_G3V2	TCONS_l2_00011427	TCONS_l2_00011427	chr17	 66117808	 66117867	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14135_PI429285431	0.9034532	A	0.9077561	A	0.997021900359547	0	lncRNA	15785-1_{1..1752}	lnc-KLF15-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF15-2:6	chr3	126008535	126010286	-	lnc-KLF15-2	lnc-KLF15-2:6	XLOC_003235	linc-ALDH1L1-2	LOC644662	NA	chr3:125998535-126010368	inter
CUST_31985_PI429285431	1.3881348	A	2.5640402	A	0.442605903770112	0	lncRNA	33707-1_{1..2542}	n338544|AF035308|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|948|NULL|-0.6672600|-0.1649666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338544|AF035308|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|948|NULL|-0.6672600|-0.1649666	chr1	226793665	226796206	+	NA	NA	NA	NA	C1orf95	NA	chr1:226783665-226796915	inner
CUST_41101_PI429285431	5.7414145	P	5.837911	P	0.935301560673494	0	lncRNA	41824-1_{1..80}	ENST00000581537 ncrna:miRNA chromosome:GRCh37:18:13459946:13460025:1 gene:ENSG00000266146 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581537 ncrna:miRNA chromosome:GRCh37:18:13459946:13460025:1 gene:ENSG00000266146 gene_biotype:miRNA transcript_biotype:miRNA	chr18	 13459946	 13460025	+	ENSG00000266146	ENST00000581537	NA	NA	C18orf1	NA	chr18:13449946-13470025	inner
CUST_39903_PI429285431	7.052342	P	6.271703	P	1.71789159473935	0	lncRNA	40787-1_{1..2573}	n406635|NR_024164|lncRNA|Homosapiens||RefGeneNoncode|NR_024164||3.5472000|-0.2878652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406635|NR_024164|lncRNA|Homosapiens||RefGeneNoncode|NR_024164||3.5472000|-0.2878652	chr6	 28292514	 28295086	-	NA	NA	NA	NA	ZNF323	NA	chr6:28292514-28313911	inner
CUST_22272_PI429285431	3.0714598	P	3.2282133	P	0.89704141576491	0	lncRNA	23873-1_{1..503}	lnc-C16orf45-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C16orf45-1:1	chr16	 15778024	 15778526	+	lnc-C16orf45-1	lnc-C16orf45-1:1	ENSG00000262380.1	CTB-193M12.3	NDE1	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10chr16:15768024-15788427"	NA	inner
CUST_26091_PI429285431	0.89439106	A	0.89819884	A	0.997364128055876	0	lncRNA	27604-1_{1..233}	lnc-RP4-604K5.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP4-604K5.1.1-1:1	chr1	 87410250	 87410482	-	lnc-RP4-604K5.1.1-1	lnc-RP4-604K5.1.1-1:1	ENSG00000224198.1	RP4-604K5.2	HS2ST1	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50chr1:87400250-87420425"	NA	inner
CUST_42631_PI429285431	4.978284	P	5.069853	P	0.938501528610224	0	lncRNA	45503-1_{1..127}	ENST00000365028 ncrna:snoRNA chromosome:GRCh37:1:224367343:224367469:1 gene:ENSG00000201898 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365028 ncrna:snoRNA chromosome:GRCh37:1:224367343:224367469:1 gene:ENSG00000201898 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	224367343	224367469	+	ENSG00000201898	ENST00000365028	NA	NA	DEGS1	NA	chr1:224370928-224377469	inter
CUST_19401_PI429285431	3.9231853	P	4.8862925	P	0.512950956237886	0	lncRNA	21063-1_{1..547}	lnc-LRRC1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC1-5:1	chr6	 53371596	 53372142	+	lnc-LRRC1-5	lnc-LRRC1-5:1	ENSG00000249379.1	RP1-27K12.4	GCLC	NA	chr6:53362139-53381717	inner
CUST_7034_PI429285431	0.9081871	A	0.9174118	A	0.993626323799867	0	lncRNA	6979-1_{1..756}	"transcript_id ""ENST00000456037.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456037.1"" | genecode_v17"	chrX	 28589649	 28590404	-	ENSG00000223742.1	ENST00000456037.1	RP11-149B9.2	RP11-149B9.2-001	IL1RAPL1	NA	chrX:28605681-28614512	inter
CUST_45081_PI429285431	3.2730718	P	2.9440804	A	1.25613489321852	0	lncRNA	49565-1_{1..1615}	"gi|310120105|ref|XR_108823.1| PREDICTED: Homo sapiens NAG20 (NAG20), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|310120105|ref|XR_108823.1| PREDICTED: Homo sapiens NAG20 (NAG20), misc_RNA"	NA	NA	NA	NA	NA	XR_108823.1	NA	NA	NA	NA	NA	Unknown
CUST_18960_PI429285431	0.8895397	A	0.88932943	A	1.00014575867942	0	lncRNA	20652-1_{1..539}	lnc-ULK4-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ULK4-7:3	chr3	 40494613	 40495151	-	lnc-ULK4-7	lnc-ULK4-7:3	ENSG00000223797	ENTPD3-AS1	RPL14	NA	chr3:40498801-40503859	inter
CUST_29399_PI429285431	1.242949	A	2.0476835	A	0.572467422115672	0	lncRNA	31153-1_{1..1145}	n332743|AF022137|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062663|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062663|-0.3361560|-0.1350656	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332743|AF022137|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062663|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062663|-0.3361560|-0.1350656	chr1	101704541	101705685	-	NA	NA	NA	NA	S1PR1	"hg19_refFlat_S1PR1:range=chr1:101704541-1017056895'pad=0,hg19_refFlat_S1PR1:range=chr1:101704541-1017056895'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.60chr1:101702305-101707076"	NA	inner
CUST_45502_PI429285431	0.9070272	A	0.9076015	A	0.999602004795316	0	lncRNA	49913-2_{3001..3080}	"gi|338827691|ref|NR_040079.1| Homo sapiens uncharacterized LOC399715 (LOC399715), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338827691|ref|NR_040079.1| Homo sapiens uncharacterized LOC399715 (LOC399715), non-coding RNA"	NA	NA	NA	NA	NA	NR_040079.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_DPPA5:range=chr6:74063043-740639485'pad=0,hg19_refFlat_DPPA5:range=chr6:74063043-740639485'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10"	NA	Unknown
CUST_51249_PI429285431	2.534299	A	3.1920493	P	0.633865960315715	0	lncRNA	54861-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008476 range=chr15:28895664-28930415 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008476 range=chr15:28895664-28930415 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28895664	 28898663	+	NA	NA	NA	NA	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40"	NA	inter
CUST_49013_PI429285431	0.89954007	A	0.8900353	A	1.00660995448497	0	lncRNA	52841-1_{1..864}	hg19_lincRNAsTranscripts_TCONS_l2_00021832 range=chr4:14630380-14732062 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021832 range=chr4:14630380-14732062 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 14630380	 14631243	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36581_PI429285431	3.3644917	P	3.3497217	P	1.0102903692655	0	lncRNA	37775-1_{1..2155}	n345077|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_626|NULL|-1.3185600|-0.2179599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345077|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_626|NULL|-1.3185600|-0.2179599	chrX	 15693618	 15695772	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16737_PI429285431	0.9044638	A	1.4552928	A	0.682627764765978	0	lncRNA	18444-1_{1..1675}	lnc-SLITRK6-9:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SLITRK6-9:5	chr13	 88323091	 88324765	-	lnc-SLITRK6-9	lnc-SLITRK6-9:5	XLOC_010683	linc-SLITRK6-6	SLITRK5	NA	chr13:88324870-88331871	inter
CUST_14716_PI429285431	3.764941	P	3.9416971	P	0.88468998713798	0	lncRNA	16380-1_{1..290}	lnc-IL37-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL37-1:1	chr2	113698358	113698647	+	lnc-IL37-1	lnc-IL37-1:1	XLOC_001630	linc-IL1F9	NA	NA	NA	inter
CUST_21084_PI429285431	0.91996354	A	2.0921443	A	0.443750066248285	0	lncRNA	22709-1_{1..640}	lnc-CALHM3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALHM3-1:1	chr10	105277143	105277782	-	lnc-CALHM3-1	lnc-CALHM3-1:1	ENSG00000235470.1	RP11-225H22.5	NEURL	NA	chr10:105267143-105287150	inner
CUST_36036_PI429285431	2.3012536	A	2.4715376	A	0.888667726328648	0	lncRNA	37361-1_{1..3000}	n344642|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_190|NULL|-1.6448000|-0.2786765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344642|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_190|NULL|-1.6448000|-0.2786765	chr1	101713305	101716304	-	NA	NA	NA	NA	S1PR1	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00chr1:101703305-101707076"	NA	inter
CUST_31561_PI429285431	3.6146705	P	1.0229595	A	6.02813196468408	0	lncRNA	33319-1_{1..2889}	n338054|M58511|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|441|NULL|15.9362000|-0.1442100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338054|M58511|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|441|NULL|15.9362000|-0.1442100	chr15	 78732133	 78735021	+	NA	NA	NA	NA	IREB2	NA	chr15:78730518-78793798	inner
CUST_26683_PI429285431	0.89900005	A	0.90320677	A	0.997088370930383	0	lncRNA	28180-1_{1..210}	n123|AC002382|scaRNA|Homosapiens|U90|NONCODEv2.0|n123|NULL|-1.1273000|-0.3565651	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n123|AC002382|scaRNA|Homosapiens|U90|NONCODEv2.0|n123|NULL|-1.1273000|-0.3565651	chr7	 89010556	 89010765	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45430_PI429285431	7.690422	P	6.0640635	P	3.08732743487827	0	lncRNA	49848-2_{3001..5714}	"gi|225703124|ref|NR_027406.1| Homo sapiens uncharacterized LOC100129034 (LOC100129034), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225703124|ref|NR_027406.1| Homo sapiens uncharacterized LOC100129034 (LOC100129034), non-coding RNA"	Chr9	127118752	127121465	+	100129034	NR_027406.1	NA	NA	NA	"hg19_refFlat_PSMB7:range=chr9:127115877-1271777045'pad=0,hg19_refFlat_PSMB7:range=chr9:127115877-1271777045'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40"	NA	inter
CUST_4737_PI429285431	0.92221725	A	0.89519316	A	1.01890821011795	0	lncRNA	4681-1_{1..351}	"transcript_id ""ENST00000553534.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553534.1"" | genecode_v17"	chr14	 21366144	 21366494	-	ENSG00000258918.1	ENST00000553534.1	RP11-219E7.4	RP11-219E7.4-001	RNASE3	NA	chr14:21359562-21360507	inter
CUST_1427_PI429285431	1.8003843	A	2.2497356	A	0.732372081082219	0	lncRNA	1416-1_{1..665}	"transcript_id ""ENST00000601385.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601385.1"" | genecode_v17"	chr3	107574011	107574675	-	ENSG00000241469.2	ENST00000601385.1	LINC00635	LINC00635-010	NA	NA	NA	inter
CUST_923_PI429285431	0.89647293	A	0.9047947	A	0.994248392777849	0	lncRNA	913-1_{1..712}	"transcript_id ""ENST00000598583.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598583.1"" | genecode_v17"	chr2	 67488198	 67488909	+	ENSG00000235885.3	ENST00000598583.1	AC023115.2	AC023115.2-003	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80"	NA	inter
CUST_39979_PI429285431	3.0115213	P	0.8893319	A	4.35354127110427	0	lncRNA	40849-2_{3001..5924}	n407062|NR_024557|lncRNA|Homosapiens||RefGeneNoncode|NR_024557||4.7864800|-0.2526848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407062|NR_024557|lncRNA|Homosapiens||RefGeneNoncode|NR_024557||4.7864800|-0.2526848	chr10	 28824421	 28827344	+	NA	NA	NA	NA	WAC	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr10:28821427-28909925"	NA	inner
CUST_49867_PI429285431	6.388097	P	6.581872	P	0.87431496629258	0	lncRNA	53619-1_{1..1644}	hg19_lincRNAsTranscripts_TCONS_l2_00026030 range=chr7:76589114-76632767 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026030 range=chr7:76589114-76632767 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 76589114	 76590757	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47862_PI429285431	1.6299951	A	0.8862097	A	1.67456386614477	0	lncRNA	51764-1_{1..1277}	"gi|410171196|ref|XR_171191.1| PREDICTED: Homo sapiens uncharacterized LOC400756 (LOC400756), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410171196|ref|XR_171191.1| PREDICTED: Homo sapiens uncharacterized LOC400756 (LOC400756), misc_RNA"	NA	NA	NA	NA	NA	XR_171191.1	NA	NA	NA	NA	NA	Unknown
CUST_11672_PI429285431	2.709085	A	2.9298584	A	0.858105299999305	0	lncRNA	13250-1_{1..602}	lnc-MYC-2:28	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYC-2:28	chr8	129113226	129113827	+	lnc-MYC-2	lnc-MYC-2:28	XLOC_006925	linc-EFR3A-4	NA	NA	NA	inter
CUST_35757_PI429285431	0.9083798	A	0.9161777	A	0.994609488829842	0	lncRNA	37178-1_{1..3000}	n342943|NR024582|mRNAlikelncRNA|Homosapiens|Jpx|lncRNAdb|342943|http://lncrnadb.com/Detail.aspx?TKeyID=241|-1.5327800|-0.2839675	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342943|NR024582|mRNAlikelncRNA|Homosapiens|Jpx|lncRNAdb|342943|http://lncrnadb.com/Detail.aspx?TKeyID=241|-1.5327800|-0.2839675	chr18	 37313713	 37316712	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001948	8.007628	P	8.257639	P	0.840890003763385	0	lncRNA	ENST00000414394	NA	NA	NA	NA	XLOC_001792	NA	ENST00000414394	THC2635014	NA	"BROAD Institute lincRNA (XLOC_001792), lincRNA [TCONS_00003068]"	chr2:193510200-193510259	hs|2q32.3	Agilent_HUMAN_G3V2	ENST00000414394	ENST00000414394	chr2	193510200	193510259	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43660_PI429285431	2.6187162	A	2.534084	A	1.06041736459709	0	lncRNA	48416-1_{1..972}	"gi|206597531|ref|NR_024160.1| Homo sapiens long intergenic non-protein coding RNA 626 (LINC00626), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|206597531|ref|NR_024160.1| Homo sapiens long intergenic non-protein coding RNA 626 (LINC00626), non-coding RNA"	Chr1	168756179	168757150	+	79100	NR_024160.1	NA	NA	NA	NA	NA	inter
CUST_46386_PI429285431	1.3367875	A	1.1273357	A	1.15624874522512	0	lncRNA	50603-1_{1..1496}	"gi|197116345|ref|NR_015430.1| Homo sapiens chromosome 14 open reading frame 64 (C14orf64), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|197116345|ref|NR_015430.1| Homo sapiens chromosome 14 open reading frame 64 (C14orf64), non-coding RNA"	NA	NA	NA	NA	NA	NR_015430.1	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20"	NA	Unknown
CUST_50272_PI429285431	4.620785	P	4.929417	P	0.807407000134023	0	lncRNA	53995-1_{1..784}	hg19_lincRNAsTranscripts_TCONS_l2_00029377 range=chr9:69616229-69643907 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029377 range=chr9:69616229-69643907 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 69616229	 69617012	-	NA	NA	NA	NA	LOC100132154	NA	chr9:69606229-69653907	inter
CUST_27799_PI429285431	1.019143	A	0.91008085	A	1.07852689265862	0	lncRNA	29385-1_{1..436}	n325027|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078342|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078342|-0.8090170|-0.2132479	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325027|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078342|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078342|-0.8090170|-0.2132479	chr20	 23583861	 23584296	-	NA	NA	NA	NA	CST9	NA	chr20:23583047-23586610	inner
CUST_32289_PI429285431	4.2189384	P	4.0852447	P	1.09709898668854	0	lncRNA	33973-1_{1..1881}	n338866|AK130500|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1291|NULL|-1.1794600|-0.3064115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338866|AK130500|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1291|NULL|-1.1794600|-0.3064115	chr2	 65569111	 65570991	-	NA	NA	NA	NA	SPRED2	NA	chr2:65559111-65580908	inner
LNCA_21_P0003249	1.9467367	A	2.0947273	A	0.902506607800433	0	lncRNA	TCONS_00006963	NA	NA	NA	NA	XLOC_002803	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002803), lincRNA [TCONS_00006963]"	chr3:127259619-127259678	hs|3q21.3	Agilent_HUMAN_G3V2	TCONS_00006963	TCONS_00006963	chr3	127259619	127259678	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1178_PI429285431	1.4975245	A	1.7936391	A	0.814442865502911	0	lncRNA	1167-1_{1..552}	"transcript_id ""ENST00000419129.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419129.1"" | genecode_v17"	chr2	180138558	180139109	+	ENSG00000237477.1	ENST00000419129.1	AC093911.1	AC093911.1-001	SESTD1	NA	chr2:180128558-180129350	inter
CUST_38833_PI429285431	1.1243081	A	0.91186273	A	1.15865043444373	0	lncRNA	39826-1_{1..3000}	n384640|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jox.1||-0.9847360|-0.3244947	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384640|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jox.1||-0.9847360|-0.3244947	chr5	 52251186	 52254185	+	NA	NA	NA	NA	ITGA1	NA	chr5:52241186-52249485	inter
CUST_23895_PI429285431	1.4521285	A	1.1312737	A	1.24907040667261	0	lncRNA	25452-1_{1..1714}	lnc-TYMS-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TYMS-3:1	chr18	   735746	   737459	+	lnc-TYMS-3	lnc-TYMS-3:1	ENSG00000266171.1	RP11-769O8.1	YES1	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_YES1:range=chr18:724424-7568275'pad=0,hg19_refFlat_YES1:range=chr18:724424-7568275'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60chr18:725746-747459"	NA	inner
CUST_4053_PI429285431	1.7552147	A	2.1454825	A	0.762987961835264	0	lncRNA	4015-1_{1..570}	"transcript_id ""ENST00000515097.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515097.2"" | genecode_v17"	chr11	 93971316	 93971885	+	ENSG00000250519.2	ENST00000515097.2	RP11-680H20.2	RP11-680H20.2-002	NA	NA	NA	inter
CUST_13440_PI429285431	2.631745	A	3.5148408	A	0.542202699069232	0	lncRNA	15079-1_{1..3000}	lnc-SULF2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SULF2-4:1	chr20	 46754811	 46757810	-	lnc-SULF2-4	lnc-SULF2-4:1	XLOC_013773	linc-SULF2-5	NA	NA	NA	inter
CUST_27764_PI429285431	1.5171416	A	1.7313893	A	0.861995534094725	0	lncRNA	29349-1_{1..1001}	n324984|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079376|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079376|-0.2206360|-0.2259723	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324984|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079376|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079376|-0.2206360|-0.2259723	chr20	 42718505	 42719505	-	NA	NA	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
CUST_11897_PI429285431	2.860641	A	3.512854	P	0.636303516629105	0	lncRNA	13479-1_{1..262}	lnc-SH3BP4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SH3BP4-2:1	chr2	236182768	236183029	+	lnc-SH3BP4-2	lnc-SH3BP4-2:1	XLOC_001905	linc-AGAP1-1	NA	NA	NA	inter
CUST_48012_PI429285431	5.434222	P	5.828167	P	0.761045703284239	0	lncRNA	51896-1_{1..1291}	"gi|410173428|ref|XR_172206.1| PREDICTED: Homo sapiens dead end protein homolog 1-like (LOC100294336), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173428|ref|XR_172206.1| PREDICTED: Homo sapiens dead end protein homolog 1-like (LOC100294336), misc_RNA"	NA	NA	NA	NA	NA	XR_172206.1	NA	NA	NA	NA	NA	Unknown
CUST_13359_PI429285431	2.18765	A	2.1268623	A	1.043035094254	0	lncRNA	14996-1_{1..1180}	lnc-C8orf4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C8orf4-1:2	chr8	 40029820	 40030999	+	lnc-C8orf4-1	lnc-C8orf4-1:2	XLOC_006781	linc-GOLGA7	NA	NA	NA	inter
CUST_16628_PI429285431	6.8988295	P	7.000226	P	0.932130271204646	0	lncRNA	18330-2_{3001..3120}	lnc-ZNF783-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF783-1:1	chr7	149098768	149098887	+	lnc-ZNF783-1	lnc-ZNF783-1:1	XLOC_006285	linc-KRBA1-4	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-24.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.50"	NA	inter
CUST_7170_PI429285431	5.3492947	P	5.574869	P	0.85525450296523	0	lncRNA	7313-1_{1..103}	"transcript_id ""ENST00000516091.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516091.1"" | genecode_v17"	chr2	 65782566	 65782668	-	ENSG00000251900.1	ENST00000516091.1	Vault	Vault.1-201	NA	NA	NA	inter
CUST_6751_PI429285431	0.90694815	A	0.89675575	A	1.00708984813187	0	lncRNA	6699-1_{1..1234}	"transcript_id ""ENST00000455711.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000455711.1"" | genecode_v17"	chr20	 61669363	 61670596	+	ENSG00000237119.1	ENST00000455711.1	RP11-305P22.5	RP11-305P22.5-001	NA	NA	NA	inter
CUST_1365_PI429285431	0.89559066	A	0.89233756	A	1.00225742124032	0	lncRNA	1353-1_{1..2129}	"transcript_id ""ENST00000485805.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000485805.1"" | genecode_v17"	chr3	 64064037	 64066165	-	ENSG00000189196.4	ENST00000485805.1	RP11-129B22.2	RP11-129B22.2-001	PRICKLE2	NA	chr3:64079526-64083039	inter
CUST_43211_PI429285431	7.9888744	P	7.3922224	P	1.51220318686418	0	lncRNA	48025-1_{1..811}	ENST00000602422 havana:sense_intronic chromosome:GRCh37:14:104162690:104163500:1 gene:ENSG00000269958 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602422 havana:sense_intronic chromosome:GRCh37:14:104162690:104163500:1 gene:ENSG00000269958 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr14	104162690	104163500	+	ENSG00000269958	ENST00000602422	NA	NA	KLC1	NA	chr14:104152690-104167888	inner
CUST_36304_PI429285431	2.9787097	A	2.94095	A	1.02651855119567	0	lncRNA	37536-1_{1..783}	n344831|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_380|NULL|-1.3533500|-0.2899861	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344831|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_380|NULL|-1.3533500|-0.2899861	chr5	 79296492	 79297274	-	NA	NA	NA	NA	MTX3	NA	chr5:79286492-79287088	inter
CUST_9119_PI429285431	3.7463682	P	3.3605306	P	1.30661816339432	0	lncRNA	10638-1_{1..1025}	lnc-SHCBP1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SHCBP1L-1:1	chr1	182808447	182809471	-	lnc-SHCBP1L-1	lnc-SHCBP1L-1:1	ENSG00000247330	AL355999.1	DHX9	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20chr1:182808439-182818726"	NA	inner
CUST_23288_PI429285431	0.907703	A	1.0040414	A	0.935404062779063	0	lncRNA	24859-1_{1..475}	lnc-FAM196A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM196A-1:1	chr10	128824536	128825010	-	lnc-FAM196A-1	lnc-FAM196A-1:1	ENSG00000223528.1	RP11-223P11.3	DOCK1	"hg19_refFlat_DOCK1:range=chr10:128594087-1292496915'pad=0,hg19_refFlat_DOCK1:range=chr10:128594087-1292496915'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40chr10:128814536-128834687"	NA	inner
CUST_43673_PI429285431	5.29847	P	3.3407824	A	3.88438876873628	0	lncRNA	48428-1_{1..3000}	"gi|357430785|ref|NR_045530.1| Homo sapiens sterol O-acyltransferase 1 (SOAT1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|357430785|ref|NR_045530.1| Homo sapiens sterol O-acyltransferase 1 (SOAT1), transcript variant 4, non-coding RNA"	Chr1	179262849	179265848	+	6646	NR_045530.1	NA	NA	NA	"hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60"	NA	inter
CUST_12303_PI429285431	2.4252803	A	2.9595973	A	0.690485488644218	0	lncRNA	13916-1_{1..226}	lnc-MBTPS2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBTPS2-1:2	chrX	 21929721	 21929946	+	lnc-MBTPS2-1	lnc-MBTPS2-1:2	XLOC_007942	linc-SMS	NA	NA	NA	inter
CUST_35724_PI429285431	2.176132	A	0.9179997	A	2.39185892502412	0	lncRNA	37142-1_{1..3000}	n342890|CR749601|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5397|NULL|-1.2036900|-0.4510099	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342890|CR749601|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5397|NULL|-1.2036900|-0.4510099	chr12	 22838920	 22841919	+	NA	NA	NA	NA	ETNK1	NA	chr12:22828920-22843608	inner
CUST_2991_PI429285431	1.386258	A	1.0143058	A	1.2941027769961	0	lncRNA	2970-1_{1..666}	"transcript_id ""ENST00000522213.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522213.1"" | genecode_v17"	chr8	  8581203	  8581868	-	ENSG00000254367.1	ENST00000522213.1	RP11-211C9.1	RP11-211C9.1-001	MFHAS1	NA	chr8:8641999-8649989	inter
CUST_653_PI429285431	3.7861757	P	4.1470723	P	0.778680498197591	0	lncRNA	645-1_{1..547}	"transcript_id ""ENST00000414065.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414065.1"" | genecode_v17"	chr2	  2645761	  2646307	-	ENSG00000234929.1	ENST00000414065.1	AC018685.1	AC018685.1-001	NA	NA	NA	inter
CUST_29542_PI429285431	5.454839	P	4.7637258	P	1.61452882685063	0	lncRNA	31301-1_{1..347}	n333017|AF153755|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071868|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071868|1.5881400|-0.2337586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333017|AF153755|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071868|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071868|1.5881400|-0.2337586	chrX	100625026	100625372	-	NA	NA	NA	NA	BTK	NA	chrX:100615026-100640272	inner
CUST_29427_PI429285431	0.9179777	A	0.9267343	A	0.993948770286134	0	lncRNA	31183-1_{1..305}	n332808|AF056454|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064729|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064729|-1.0370100|-0.0755379	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332808|AF056454|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064729|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064729|-1.0370100|-0.0755379	chr5	 10057614	 10057918	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014414	4.228194	P	4.3592415	P	0.913168183919316	0	lncRNA	XR_109670	XR_109670	XR_109670	NA	NA	LOC100506369	uncharacterized LOC100506369	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506369 (LOC100506369), miscRNA [XR_109670]"	chr21:35950497-35948944	hs|21q22.12	Agilent_HUMAN_G3V2	XR_109670	XR_109670	chr21	 35948944	 35950497	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41478_PI429285431	2.6284466	A	3.4431143	P	0.568539424819981	0	lncRNA	42676-1_{1..71}	ENST00000385270 ncrna:miRNA chromosome:GRCh37:X:133680358:133680428:-1 gene:ENSG00000208005 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385270 ncrna:miRNA chromosome:GRCh37:X:133680358:133680428:-1 gene:ENSG00000208005 gene_biotype:miRNA transcript_biotype:miRNA	chrX	133680358	133680428	-	ENSG00000208005	ENST00000385270	NA	NA	NA	NA	NA	inter
CUST_5352_PI429285431	6.7434115	P	7.429186	P	0.621671997106585	0	lncRNA	5290-1_{1..448}	"transcript_id ""ENST00000559321.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559321.1"" | genecode_v17"	chr15	 97954485	 97954932	+	ENSG00000259485.1	ENST00000559321.1	CTD-2147F2.1	CTD-2147F2.1-002	NA	"hg19_refFlat_ZNF182:range=chrX:47835566-478479955'pad=0,hg19_refFlat_ZNF182:range=chrX:47835566-478479955'pad=0 3'pad=0 strand=- repeatMasking=none,-60.70"	NA	inter
CUST_37617_PI429285431	2.9891882	A	2.6511433	A	1.26404243775923	0	lncRNA	38715-1_{1..3000}	n346096|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1646|NULL|-1.6476000|-0.3452546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346096|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1646|NULL|-1.6476000|-0.3452546	chr10	  4623334	  4626333	-	NA	NA	NA	NA	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.31;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70"	NA	inter
CUST_26033_PI429285431	0.9044667	A	0.9077322	A	0.997739087603246	0	lncRNA	27551-1_{1..1333}	lnc-MARVELD3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-MARVELD3-4:1	chr16	 71570489	 71571821	+	lnc-MARVELD3-4	lnc-MARVELD3-4:1	ENSG00000262588.1	RP11-510M2.9	CHST4	NA	chr16:71560489-71572493	inner
CUST_31821_PI429285431	4.3970585	P	2.6431527	A	3.37270421489543	0	lncRNA	33557-2_{3001..4979}	n338368|BX537597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|763|NULL|-1.1117700|-0.4148928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338368|BX537597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|763|NULL|-1.1117700|-0.4148928	chr1	173903351	173905329	-	NA	NA	NA	NA	RC3H1	NA	chr1:173900352-173915313	inner
CUST_13518_PI429285431	2.3104172	A	1.9276049	A	1.30388108443562	0	lncRNA	15158-1_{1..983}	lnc-MRPS14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPS14-1:1	chr1	174967782	174968764	-	lnc-MRPS14-1	lnc-MRPS14-1:1	XLOC_001097	linc-RC3H1-2	CACYBP	NA	chr1:174968571-174978522	inter
CUST_20305_PI429285431	0.90130687	A	0.89951235	A	1.00124464040122	0	lncRNA	21948-1_{1..538}	lnc-RNF20-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF20-1:2	chr9	104243645	104244182	+	lnc-RNF20-1	lnc-RNF20-1:2	ENSG00000225376.1	RP11-490D19.6	C9orf125	NA	chr9:104237608-104249475	inner
CUST_16593_PI429285431	0.9189924	A	0.92895025	A	0.99312151020383	0	lncRNA	18294-1_{1..400}	lnc-FAR2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAR2-2:2	chr12	 28726173	 28726572	+	lnc-FAR2-2	lnc-FAR2-2:2	XLOC_009695	linc-FAR2-2	NA	NA	NA	inter
CUST_14907_PI429285431	2.6229482	A	2.1550732	A	1.38307078986709	0	lncRNA	16570-1_{1..228}	lnc-LRRIQ1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRIQ1-1:2	chr12	 85382721	 85382948	+	lnc-LRRIQ1-1	lnc-LRRIQ1-1:2	XLOC_009819	linc-LRRIQ1	NA	NA	NA	inter
CUST_40255_PI429285431	12.515099	P	12.148564	P	1.28925264022891	0	lncRNA	41068-1_{1..3000}	n408181|NR_028324|lncRNA|Homosapiens||RefGeneNoncode|NR_028324||2.6573900|-0.1155718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n408181|NR_028324|lncRNA|Homosapiens||RefGeneNoncode|NR_028324||2.6573900|-0.1155718	chr19	   197015	   200014	-	NA	NA	NA	NA	LOC100507200	NA	chr19:187015-195690	inter
CUST_49587_PI429285431	0.89490277	A	0.896317	A	0.999020210770063	0	lncRNA	53376-1_{1..752}	hg19_lincRNAsTranscripts_TCONS_l2_00024955 range=chr6:143312300-143360417 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024955 range=chr6:143312300-143360417 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	143312300	143313051	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010521	2.348918	A	2.4662952	A	0.92186206084868	0	lncRNA	ENST00000481055	NA	BC044862	NA	Hs.349110	MST1	macrophage stimulating 1 (hepatocyte growth factor-like)	ENST00000481055	THC2557054	GO:0008150|GO:0003674|GO:0004252|GO:0006508|GO:0005576|GO:0005575|GO:0003824	"BROAD Institute lincRNA (XLOC_l2_000080), lincRNA [TCONS_l2_00000119]"	chr3:49725412-49725353	hs|3p21.31	Agilent_HUMAN_G3V2	ENST00000481055	ENST00000481055	chr3	 49725353	 49725412	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21322_PI429285431	5.39733	P	6.5732594	P	0.442598540846532	0	lncRNA	22945-1_{1..1219}	lnc-RHOF-1:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RHOF-1:15	chr12	122237753	122238971	-	lnc-RHOF-1	lnc-RHOF-1:15	ENSG00000256392.1	RP11-347I19.3	SETD1B	NA	chr12:122242638-122248583	inter
CUST_26862_PI429285431	0.89668566	A	0.89806956	A	0.999041213546561	0	lncRNA	28376-1_{1..248}	n323934|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054990|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054990|-1.3443700|-0.2151329	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323934|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054990|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054990|-1.3443700|-0.2151329	chr9	137496164	137496411	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005087	1.7115396	A	1.5350554	A	1.13012644607269	0	lncRNA	TCONS_00012361	NA	NA	NA	NA	XLOC_005921	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005921), lincRNA [TCONS_00012361]"	chr6:167647944-167647885	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012361	TCONS_00012361	chr6	167647885	167647944	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9603_PI429285431	1.0774685	A	1.0081457	A	1.04922406300428	0	lncRNA	11118-1_{1..204}	lnc-SYK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYK-1:1	chr9	 93696243	 93696446	+	lnc-SYK-1	lnc-SYK-1:1	XLOC_007453	linc-CENPP-9	NA	NA	NA	inter
CUST_46946_PI429285431	3.5119624	A	3.1880999	P	1.25167715845113	0	lncRNA	51054-1_{1..3000}	"gi|384229059|ref|NR_047566.1| Homo sapiens caspase recruitment domain family, member 14 (CARD14), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384229059|ref|NR_047566.1| Homo sapiens caspase recruitment domain family, member 14 (CARD14), transcript variant 4, non-coding RNA"	Chr17	 78143791	 78146790	+	79092	NR_047566.1	NA	NA	NA	NA	NA	inter
CUST_37182_PI429285431	1.2953352	A	1.8155693	A	0.697258682788663	0	lncRNA	38297-1_{1..1849}	n345616|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1165|NULL|-1.3563500|-0.3455264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345616|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1165|NULL|-1.3563500|-0.3455264	chr4	124326622	124328470	+	NA	NA	NA	NA	SPRY1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60chr4:124317956-124324910"	NA	inter
CUST_47173_PI429285431	3.5064723	P	3.3920047	P	1.08257546728962	0	lncRNA	51250-1_{1..1558}	"gi|383387809|ref|NR_047529.1| Homo sapiens sialic acid binding Ig-like lectin 17, pseudogene (SIGLEC17P), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|383387809|ref|NR_047529.1| Homo sapiens sialic acid binding Ig-like lectin 17, pseudogene (SIGLEC17P), transcript variant 1, non-coding RNA"	Chr19	 51670585	 51672142	+	284367	NR_047529.1	NA	NA	NA	NA	NA	inter
CUST_23145_PI429285431	6.3260164	P	6.6993017	P	0.772022446780536	0	lncRNA	24716-1_{1..463}	lnc-FAM83G-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM83G-2:1	chr17	 18764736	 18765198	-	lnc-FAM83G-2	lnc-FAM83G-2:1	ENSG00000264273.1	CTD-2145A24.4	PRPSAP2	NA	chr17:18761492-18774779	inner
CUST_521_PI429285431	0.9008761	A	0.9070908	A	0.995701563056138	0	lncRNA	513-1_{1..414}	"transcript_id ""ENST00000450681.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450681.1"" | genecode_v17"	chr1	189837131	189837544	-	ENSG00000238270.1	ENST00000450681.1	RP11-445J9.1	RP11-445J9.1-001	NA	NA	NA	inter
CUST_51812_PI429285431	5.3869133	P	4.3456674	P	2.05800416219138	0	lncRNA	55366-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00012428 range=chr19:24014400-24053826 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012428 range=chr19:24014400-24053826 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 24014400	 24017399	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15095_PI429285431	4.552593	P	4.768158	P	0.861208820037474	0	lncRNA	16759-1_{1..657}	lnc-CTR9-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTR9-5:1	chr11	 10954994	 10955650	+	lnc-CTR9-5	lnc-CTR9-5:1	XLOC_009067	linc-USP47-1	NA	NA	NA	inter
CUST_9690_PI429285431	2.072583	A	2.331323	A	0.835817574944406	0	lncRNA	11206-2_{3001..6000}	lnc-KCNK10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNK10-1:1	chr14	 88629762	 88632761	-	lnc-KCNK10-1	lnc-KCNK10-1:1	XLOC_011100	linc-GALC-3	NA	NA	NA	inter
LNCA_21_P0005057	0.902563	A	1.1940708	A	0.817047693310238	0	lncRNA	TCONS_00012271	NA	NA	NA	NA	XLOC_005826	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005826), lincRNA [TCONS_00012271]"	chr6:125634823-125634764	hs|6q22.31	Agilent_HUMAN_G3V2	TCONS_00012271	TCONS_00012271	chr6	125634764	125634823	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35875_PI429285431	0.8894413	A	0.8908411	A	0.999030203133888	0	lncRNA	37265-2_{3001..6000}	n344538|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_86|NULL|-1.3315700|-0.3806893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344538|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_86|NULL|-1.3315700|-0.3806893	chr10	 67333296	 67336295	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10"	NA	inter
CUST_22798_PI429285431	5.5746107	P	5.8834434	P	0.807294685813026	0	lncRNA	24378-1_{1..876}	lnc-C17orf48-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf48-2:2	chr17	 10671906	 10672781	+	lnc-C17orf48-2	lnc-C17orf48-2:2	ENSG00000263400.1	CTC-297N7.5	NA	"hg19_refFlat_TMEM220:range=chr17:10618770-106331685'pad=0,hg19_refFlat_TMEM220:range=chr17:10618770-106331685'pad=0 3'pad=0 strand=- repeatMasking=none,-99.20"	NA	inter
CUST_44627_PI429285431	1.2884879	A	1.0127585	A	1.21060599458164	0	lncRNA	49193-1_{1..962}	"gi|310119648|ref|XR_110065.1| PREDICTED: Homo sapiens VCEW9374 (LOC100133106), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119648|ref|XR_110065.1| PREDICTED: Homo sapiens VCEW9374 (LOC100133106), misc_RNA"	NA	NA	NA	NA	NA	XR_110065.1	NA	NA	NA	NA	NA	Unknown
CUST_41468_PI429285431	7.5206585	P	7.803705	P	0.821853697418797	0	lncRNA	42660-1_{1..102}	ENST00000579148 ncrna:miRNA chromosome:GRCh37:19:6416421:6416522:-1 gene:ENSG00000266722 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579148 ncrna:miRNA chromosome:GRCh37:19:6416421:6416522:-1 gene:ENSG00000266722 gene_biotype:miRNA transcript_biotype:miRNA	chr19	  6416421	  6416522	-	ENSG00000266722	ENST00000579148	NA	NA	KHSRP	NA	chr19:6413115-6424822	inner
CUST_7607_PI429285431	0.90168935	A	1.1137344	A	0.863312600112111	0	lncRNA	9242-1_{1..2663}	lnc-ITGB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITGB2-1:1	chr21	 46286389	 46289051	-	lnc-ITGB2-1	lnc-ITGB2-1:1	ENSG00000250713	ENST00000504556	PTTG1IP	NA	chr21:46276389-46293818	inner
CUST_301_PI429285431	0.9091286	A	0.90510964	A	1.00278961454633	0	lncRNA	293-1_{1..683}	"transcript_id ""ENST00000439186.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439186.1"" | genecode_v17"	chr1	 84255963	 84256645	+	ENSG00000237076.1	ENST00000439186.1	RP5-836J3.1	RP5-836J3.1-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80"	NA	inter
CUST_23632_PI429285431	0.89626026	A	1.0354568	A	0.908024708047784	0	lncRNA	25197-2_{3001..4126}	lnc-CALML5-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALML5-2:3	chr10	  5566879	  5568004	-	lnc-CALML5-2	lnc-CALML5-2:3	ENSG00000205488.3	RP11-116G8.4	CALML3	NA	chr10:5566924-5568225	inter
CUST_45486_PI429285431	0.8898101	A	0.88404655	A	1.00400297903605	0	lncRNA	49899-2_{3001..4093}	"gi|333944054|ref|NR_038284.1| Homo sapiens uncharacterized LOC100507034 (LOC100507034), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|333944054|ref|NR_038284.1| Homo sapiens uncharacterized LOC100507034 (LOC100507034), non-coding RNA"	Chr10	  3186793	  3187885	+	100507034	NR_038284.1	NA	NA	NA	"hg19_refFlat_PITRM1:range=chr10:3180223-32149715'pad=0,hg19_refFlat_PITRM1:range=chr10:3180223-32149715'pad=0 3'pad=0 strand=- repeatMasking=none,-103.10;hg19_refFlat_PITRM1:range=chr10:3180223-32149645'pad=0,hg19_refFlat_PITRM1:range=chr10:3180223-32149645'pad=0 3'pad=0 strand=- repeatMasking=none,-103.10"	NA	inter
CUST_17030_PI429285431	1.0816658	A	1.1211449	A	0.973006197971446	0	lncRNA	18741-1_{1..432}	lnc-OTOS-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OTOS-1:2	chr2	241195221	241195652	-	lnc-OTOS-1	lnc-OTOS-1:2	XLOC_002542	linc-OTOS-2	NA	NA	NA	inter
CUST_1520_PI429285431	0.9025948	A	0.93149084	A	0.980170043439657	0	lncRNA	1507-1_{1..2845}	"transcript_id ""ENST00000473595.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000473595.1"" | genecode_v17"	chr3	161144215	161147059	+	ENSG00000240567.1	ENST00000473595.1	RP11-3P17.4	RP11-3P17.4-001	NA	"hg19_refFlat_RPL23A:range=chr17:27047024-270508995'pad=0,hg19_refFlat_RPL23A:range=chr17:27047024-270508995'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.20"	NA	inter
CUST_16069_PI429285431	1.021568	A	0.90252197	A	1.08601650573945	0	lncRNA	17772-1_{1..311}	lnc-CHD2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD2-2:2	chr15	 93656523	 93656833	+	lnc-CHD2-2	lnc-CHD2-2:2	XLOC_011359	linc-MCTP2-6	NA	NA	NA	inter
CUST_15959_PI429285431	1.8650088	A	1.900295	A	0.975838156046004	0	lncRNA	17656-1_{1..1339}	lnc-FAM120B-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM120B-3:3	chr6	170491080	170492418	+	lnc-FAM120B-3	lnc-FAM120B-3:3	XLOC_005563	linc-FAM120B-2	NA	NA	NA	inter
CUST_46909_PI429285431	4.0133505	P	3.2397513	P	1.7095293596602	0	lncRNA	51028-1_{1..3000}	"gi|225903381|ref|NR_027418.1| Homo sapiens long intergenic non-protein coding RNA 674 (LINC00674), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225903381|ref|NR_027418.1| Homo sapiens long intergenic non-protein coding RNA 674 (LINC00674), non-coding RNA"	NW_003871088.1	   161566	   164565	+	100499466	NR_027418.1	NA	NA	NA	"hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0,hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0,hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0,hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0,hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0,hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0,hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SH3GL1:range=chr19:4361597-44003655'pad=0,hg19_refFlat_SH3GL1:range=chr19:4361597-44003655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90"	NA	Unknown
CUST_30348_PI429285431	3.3755856	P	3.532103	P	0.897188230443868	0	lncRNA	32124-1_{1..543}	n335424|AY671729|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257012|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257012|-0.8935710|-0.1026342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335424|AY671729|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257012|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257012|-0.8935710|-0.1026342	chr14	106322020	106322562	+	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106839782	inter
CUST_31615_PI429285431	0.889389	A	0.88516605	A	1.00293141410215	0	lncRNA	33371-1_{1..640}	n338132|AL110293|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|520|NULL|-0.9611640|-0.3607155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338132|AL110293|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|520|NULL|-0.9611640|-0.3607155	chr15	 91333267	 91333906	-	NA	NA	NA	NA	BLM	NA	chr15:91323267-91343891	inner
CUST_18141_PI429285431	0.89360476	A	0.93023914	A	0.974926673763774	0	lncRNA	19876-1_{1..478}	lnc-GRHL2-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GRHL2-7:2	chr8	102145611	102146088	+	lnc-GRHL2-7	lnc-GRHL2-7:2	ENSG00000253355	KB-1460A1.2	NA	NA	NA	inter
CUST_41760_PI429285431	0.92287225	A	0.9169754	A	1.00409574970233	0	lncRNA	43316-1_{1..79}	ENST00000408463 ncrna:miRNA chromosome:GRCh37:1:171070869:171070947:-1 gene:ENSG00000221390 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408463 ncrna:miRNA chromosome:GRCh37:1:171070869:171070947:-1 gene:ENSG00000221390 gene_biotype:miRNA transcript_biotype:miRNA	chr1	171070869	171070947	-	ENSG00000221390	ENST00000408463	NA	NA	FMO3	NA	chr1:171060869-171080947	inner
CUST_13937_PI429285431	0.8947607	A	0.9771047	A	0.944521799882569	0	lncRNA	15584-1_{1..412}	lnc-MRPL39-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPL39-4:2	chr21	 26838981	 26839392	-	lnc-MRPL39-4	lnc-MRPL39-4:2	XLOC_014036	linc-TMPRSS15-9	NA	NA	NA	inter
CUST_237_PI429285431	0.90799963	A	0.91013634	A	0.998520041707806	0	lncRNA	228-1_{1..645}	"transcript_id ""ENST00000424357.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424357.1"" | genecode_v17"	chr1	 56289480	 56290124	+	ENSG00000233147.1	ENST00000424357.1	RP11-90C4.1	RP11-90C4.1-001	NA	NA	NA	inter
CUST_1668_PI429285431	8.540983	P	8.71617	P	0.885652714665573	0	lncRNA	1653-1_{1..626}	"transcript_id ""ENST00000420213.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420213.1"" | genecode_v17"	chr3	197185276	197185901	+	ENSG00000237167.1	ENST00000420213.1	AC128709.2	AC128709.2-001	NA	NA	NA	inter
CUST_19926_PI429285431	2.5834084	A	1.9104047	A	1.59438904211703	0	lncRNA	21581-1_{1..746}	lnc-TRIM16-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM16-1:2	chr17	 15646917	 15647662	-	lnc-TRIM16-1	lnc-TRIM16-1:2	ENSG00000233002.2	AC005324.6	TBC1D26	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90chr17:15636917-15648098"	NA	inner
CUST_12450_PI429285431	3.5575743	P	3.645168	P	0.941091105637778	0	lncRNA	14062-1_{1..2804}	lnc-AC114947.1.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC114947.1.1-2:2	chr5	 43068072	 43070875	+	lnc-AC114947.1.1-2	lnc-AC114947.1.1-2:2	XLOC_004366	linc-ZNF131-1	NA	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80"	NA	inter
CUST_27108_PI429285431	0.90643835	A	0.9139168	A	0.994829745482423	0	lncRNA	28641-1_{1..1999}	n324220|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327184|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327184|2.6116700|-0.4071669	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324220|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327184|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327184|2.6116700|-0.4071669	chr7	 23212156	 23214154	+	NA	NA	NA	NA	KLHL7	NA	chr7:23202156-23215040	inner
CUST_51759_PI429285431	11.676759	P	11.332868	P	1.26917499236495	0	lncRNA	55312-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00012779 range=chr19:59086569-59117370 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012779 range=chr19:59086569-59117370 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 59086569	 59089568	+	NA	NA	NA	NA	MZF1	"hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr19:59076569-59084942"	NA	inter
CUST_37689_PI429285431	0.9293756	A	0.92844766	A	1.00064340589156	0	lncRNA	38781-1_{1..1112}	n346178|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1728|NULL|-1.3184900|-0.2120822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346178|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1728|NULL|-1.3184900|-0.2120822	chr12	 93388101	 93389212	+	NA	NA	NA	NA	NA	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00"	NA	inter
LNCA_21_P0008781	2.475094	A	1.6706887	A	1.74642574119816	0	lncRNA	ENST00000554440	XR_109222	XR_109222	NA	Hs.97584	XLOC_011583	NA	ENST00000554440	THC2647435	NA	"PREDICTED: Homo sapiens hypothetical LOC100507166 (LOC100507166), miscRNA [XR_109222]"	chr15:93013528-93013469	hs|15q26.1	Agilent_HUMAN_G3V2	ENST00000554440	ENST00000554440	chr15	 93013469	 93013528	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30618_PI429285431	7.3759956	P	7.5198636	P	0.905089270624627	0	lncRNA	32400-1_{1..389}	n335957|X72442|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323284|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323284|2.5599400|-0.1963746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335957|X72442|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323284|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323284|2.5599400|-0.1963746	chr2	 89160396	 89160784	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36843_PI429285431	0.92879784	A	1.3478297	A	0.747926362040471	0	lncRNA	38008-1_{1..326}	n345316|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_865|NULL|-1.3911600|-0.4299854	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345316|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_865|NULL|-1.3911600|-0.4299854	chr15	 85287095	 85287420	+	NA	NA	NA	NA	ZNF592	NA	chr15:85291818-85297421	inter
CUST_11451_PI429285431	4.044617	P	4.0044036	P	1.02826591404232	0	lncRNA	13019-1_{1..1025}	lnc-DHX37-10:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-10:12	chr12	127221212	127222236	-	lnc-DHX37-10	lnc-DHX37-10:12	XLOC_010244	linc-DHX37-4	NA	NA	NA	inter
CUST_40359_PI429285431	7.480827	P	7.5130816	P	0.977890884658937	0	lncRNA	41160-1_{1..3000}	n409101|NR_033230|lncRNA|Homosapiens||RefGeneNoncode|NR_033230||16.3608000|-0.0887082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409101|NR_033230|lncRNA|Homosapiens||RefGeneNoncode|NR_033230||16.3608000|-0.0887082	chr2	130908964	130911963	-	NA	NA	NA	NA	MZT2B	"hg19_refFlat_MZT2A:range=chr2:132241634-1322499495'pad=0,hg19_refFlat_MZT2A:range=chr2:132241634-1322499495'pad=0 3'pad=0 strand=- repeatMasking=none,-113.70;hg19_refFlat_MZT2B:range=chr2:130939856-1309481995'pad=0,hg19_refFlat_MZT2B:range=chr2:130939856-1309481995'pad=0 3'pad=0 strand=+ repeatMasking=none,-113.70chr2:130939501-130948300"	NA	inner
CUST_37363_PI429285431	3.322629	P	3.4528062	P	0.913719215152576	0	lncRNA	38467-1_{1..425}	n345811|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1360|NULL|-1.2629100|-0.3705470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345811|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1360|NULL|-1.2629100|-0.3705470	chr7	 21209727	 21210151	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18444_PI429285431	3.0173807	P	2.6195872	A	1.31749135925293	0	lncRNA	20168-1_{1..781}	lnc-EVX1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EVX1-3:1	chr7	 27240242	 27241022	+	lnc-EVX1-3	lnc-EVX1-3:1	ENSG00000243766	HOTTIP	HOXA13	NA	chr7:27236499-27239725	inter
LNCA_21_P0001013	2.3438814	A	2.668475	A	0.798523294708207	0	lncRNA	ENST00000431525	NA	NA	NA	NA	XLOC_000386	NA	ENST00000431525	NA	NA	"BROAD Institute lincRNA (XLOC_000386), lincRNA [TCONS_00000296]"	chr1:147171303-147171362	hs|1q21.2	Agilent_HUMAN_G3V2	ENST00000431525	ENST00000431525	chr1	147171303	147171362	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18717_PI429285431	3.6736007	P	3.489151	P	1.13638342971811	0	lncRNA	20415-1_{1..759}	lnc-GTF2F2-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2F2-2:7	chr13	 45952665	 45953423	+	lnc-GTF2F2-2	lnc-GTF2F2-2:7	ENSG00000170919	XXyac-R12DG2.2	NA	NA	NA	inter
CUST_1024_PI429285431	1.3765699	A	1.431129	A	0.962888665190196	0	lncRNA	1013-1_{1..552}	"transcript_id ""ENST00000562613.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562613.1"" | genecode_v17"	chr2	111003274	111003825	+	ENSG00000261760.2	ENST00000562613.1	RP11-1223D19.1	RP11-1223D19.1-010	LOC100287119	NA	chr2:111025028-111045083	inter
CUST_20214_PI429285431	1.1140287	A	1.2258475	A	0.92542065197103	0	lncRNA	21858-1_{1..743}	lnc-RP11-817J15.3.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-817J15.3.1-2:2	chr11	102498440	102499182	+	lnc-RP11-817J15.3.1-2	lnc-RP11-817J15.3.1-2:2	ENSG00000256916.1	RP11-817J15.2	MMP20	NA	chr11:102488440-102496063	inter
CUST_42359_PI429285431	0.8960087	A	0.89208525	A	1.00272322957715	0	lncRNA	45031-1_{1..73}	ENST00000362451 ncrna:snoRNA chromosome:GRCh37:10:128468271:128468343:-1 gene:ENSG00000199321 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362451 ncrna:snoRNA chromosome:GRCh37:10:128468271:128468343:-1 gene:ENSG00000199321 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	128468271	128468343	-	ENSG00000199321	ENST00000362451	NA	NA	NA	NA	NA	inter
CUST_16644_PI429285431	0.9560834	A	1.1436486	A	0.878086395759184	0	lncRNA	18345-1_{1..1112}	lnc-PHYHIPL-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHYHIPL-2:2	chr10	 60825037	 60826148	+	lnc-PHYHIPL-2	lnc-PHYHIPL-2:2	XLOC_008489	linc-PHYHIPL	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-16.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50"	NA	inter
CUST_43758_PI429285431	0.9178762	A	0.9115955	A	1.00436293952466	0	lncRNA	48496-1_{1..3000}	"gi|224586913|ref|NR_027247.1| Homo sapiens POTE ankyrin domain family, member F pseudogene (LOC100130331), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224586913|ref|NR_027247.1| Homo sapiens POTE ankyrin domain family, member F pseudogene (LOC100130331), non-coding RNA"	Chr1	238025475	238028474	+	100130331	NR_027247.2	NA	NA	NA	"hg19_refFlat_ZP4:range=chr1:238045722-2380539355'pad=0,hg19_refFlat_ZP4:range=chr1:238045722-2380539355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80"	NA	inter
CUST_46889_PI429285431	0.9135434	A	2.0200512	A	0.464416842849206	0	lncRNA	51012-1_{1..2162}	"gi|62955053|ref|NR_002307.1| Homo sapiens msh homeobox 2 pseudogene 1 (MSX2P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|62955053|ref|NR_002307.1| Homo sapiens msh homeobox 2 pseudogene 1 (MSX2P1), non-coding RNA"	Chr17	 56234320	 56236481	+	55545	NR_002307.1	NA	NA	NA	NA	NA	inter
CUST_34504_PI429285431	0.9160193	A	0.9205672	A	0.996852599420185	0	lncRNA	35969-2_{3001..3308}	n341380|AK125943|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3849|NULL|2.6716600|-0.1839885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341380|AK125943|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3849|NULL|2.6716600|-0.1839885	chr7	157409714	157410021	+	NA	NA	NA	NA	PTPRN2	NA	chr7:157396714-157421457	inner
CUST_2918_PI429285431	0.9105692	A	0.902034	A	1.00593368479263	0	lncRNA	2899-1_{1..378}	"transcript_id ""ENST00000432702.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432702.1"" | genecode_v17"	chr7	121283388	121283765	-	ENSG00000227743.1	ENST00000432702.1	RP4-745K6.1	RP4-745K6.1-001	NA	NA	NA	inter
CUST_46792_PI429285431	0.8995247	A	0.89540696	A	1.00285827697777	0	lncRNA	50938-1_{1..3000}	"gi|223029502|ref|NR_026738.1| Homo sapiens EF-hand calcium binding domain 5 (EFCAB5), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223029502|ref|NR_026738.1| Homo sapiens EF-hand calcium binding domain 5 (EFCAB5), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_026738.1	NA	NA	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.20"	NA	Unknown
CUST_31769_PI429285431	0.9114377	A	0.91588295	A	0.996923529559179	0	lncRNA	33510-1_{1..361}	n338311|AF086035|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|705|NULL|-1.2955400|-0.4420042	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338311|AF086035|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|705|NULL|-1.2955400|-0.4420042	chr14	 55525593	 55525953	-	NA	NA	NA	NA	SOCS4	NA	chr14:55515593-55516207	inner
CUST_51633_PI429285431	7.6459246	P	7.8201027	P	0.88627228255975	0	lncRNA	55203-1_{1..754}	hg19_lincRNAsTranscripts_TCONS_l2_00010789 range=chr17:42010258-42016323 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010789 range=chr17:42010258-42016323 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 42010258	 42011011	+	NA	NA	NA	NA	PPY	NA	chr17:42018172-42019833	inter
CUST_44007_PI429285431	7.7221375	P	7.5764217	P	1.10627940295929	0	lncRNA	48698-1_{1..1609}	"gi|241666466|ref|NR_027862.1| Homo sapiens histone acetyltransferase 1 (HAT1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|241666466|ref|NR_027862.1| Homo sapiens histone acetyltransferase 1 (HAT1), transcript variant 2, non-coding RNA"	Chr2	172778935	172780543	+	8520	NR_027862.1	NA	NA	NA	NA	NA	inter
CUST_13388_PI429285431	6.2930946	P	6.4476404	P	0.898415174122583	0	lncRNA	15024-1_{1..1044}	lnc-NOM1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOM1-6:1	chr7	156713985	156715028	+	lnc-NOM1-6	lnc-NOM1-6:1	XLOC_006309	linc-NOM1-2	NA	NA	NA	inter
CUST_22869_PI429285431	0.92463267	A	0.9678384	A	0.970496066027545	0	lncRNA	24446-1_{1..381}	lnc-ZFC3H1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZFC3H1-7:1	chr12	 73122565	 73122945	-	lnc-ZFC3H1-7	lnc-ZFC3H1-7:1	ENSG00000258235.1	RP11-12K6.2	NA	NA	NA	inter
CUST_48505_PI429285431	0.8883683	A	0.8992405	A	0.992492289936923	0	lncRNA	52358-1_{1..2947}	hg19_lincRNAsTranscripts_TCONS_l2_00014609 range=chr2:63902748-64054976 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014609 range=chr2:63902748-64054976 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 63902748	 63905694	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14495_PI429285431	1.490436	A	1.1538196	A	1.26279145199498	0	lncRNA	16162-1_{1..1536}	lnc-C4orf32-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C4orf32-1:1	chr4	112725551	112727086	+	lnc-C4orf32-1	lnc-C4orf32-1:1	XLOC_003649	linc-C4orf32-1	NA	NA	NA	inter
CUST_44052_PI429285431	0.9066356	A	0.9109441	A	0.997018030302711	0	lncRNA	48727-1_{1..2377}	"gi|385275072|ref|NR_047659.1| Homo sapiens sperm associated antigen 16 (SPAG16), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385275072|ref|NR_047659.1| Homo sapiens sperm associated antigen 16 (SPAG16), transcript variant 3, non-coding RNA"	Chr2	214149103	214151479	+	79582	NR_047659.1	NA	NA	NA	NA	NA	inter
CUST_39869_PI429285431	0.90631366	A	0.9154351	A	0.993697444531004	0	lncRNA	40765-3_{6001..6814}	n406538|NR_024052|lncRNA|Homosapiens||RefGeneNoncode|NR_024052||0.1745660|-0.2402520	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406538|NR_024052|lncRNA|Homosapiens||RefGeneNoncode|NR_024052||0.1745660|-0.2402520	chr6	  1554085	  1554898	-	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40"	NA	inter
CUST_38256_PI429285431	4.2323394	P	4.3155684	P	0.943942574588369	0	lncRNA	39314-1_{1..2454}	n381789|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pye.1||-1.0979600|-0.3704934	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381789|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pye.1||-1.0979600|-0.3704934	chr11	121966607	121969060	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29244_PI429285431	5.8004193	P	5.866453	P	0.955260622131645	0	lncRNA	30995-1_{1..383}	n332327|FM177952|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000559037_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000559037_03|-1.0409500|-0.4223874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332327|FM177952|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000559037_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000559037_03|-1.0409500|-0.4223874	chr6	  2515661	  2516043	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16291_PI429285431	2.3785152	A	2.728107	A	0.784806121631906	0	lncRNA	17997-2_{3001..3417}	lnc-ANKRA2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRA2-5:1	chr5	 72413414	 72413830	-	lnc-ANKRA2-5	lnc-ANKRA2-5:1	XLOC_004879	linc-ZNF366-6	TMEM171	NA	chr5:72416388-72423568	inter
CUST_7584_PI429285431	0.89639187	A	0.9019244	A	0.996172486105115	0	lncRNA	9219-1_{1..501}	lnc-CYB5R2-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYB5R2-3:3	chr11	  7486984	  7487484	-	lnc-CYB5R2-3	lnc-CYB5R2-3:3	ENSG00000251364	ENSG00000251364.2	SYT9	NA	chr11:7476984-7490276	inner
LNCA_21_P0006152	0.91810316	A	0.9249242	A	0.995283174680946	0	lncRNA	TCONS_00016010	NA	NA	NA	NA	XLOC_007401	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007401), lincRNA [TCONS_00016010]"	chr9:75984659-75984718	hs|9q21.13	Agilent_HUMAN_G3V2	TCONS_00016010	TCONS_00016010	chr9	 75984659	 75984718	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17805_PI429285431	0.9012145	A	2.1132245	A	0.431666787190671	0	lncRNA	19540-1_{1..693}	lnc-DMRTA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRTA2-1:1	chr1	 50786689	 50787381	-	lnc-DMRTA2-1	lnc-DMRTA2-1:1	XLOC_000832	linc-AGBL4-1	NA	NA	NA	inter
LNCA_21_P0008423	0.9185257	A	0.9245269	A	0.995848924770264	0	lncRNA	THC2548681	NA	NA	NA	NA	XLOC_010998	NA	NA	THC2548681	NA	"BROAD Institute lincRNA (XLOC_010998), lincRNA [TCONS_00022712]"	chr14:038066433-038066374	hs|14q21.1	Agilent_HUMAN_G3V2	THC2548681	THC2548681	chr14	 38066374	 38066433	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44376_PI429285431	9.998291	P	10.199487	P	0.869829172431899	0	lncRNA	48996-1_{1..2096}	"gi|398303863|ref|NR_073070.1| Homo sapiens transmembrane protein 165 (TMEM165), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|398303863|ref|NR_073070.1| Homo sapiens transmembrane protein 165 (TMEM165), transcript variant 2, non-coding RNA"	Chr4	 56262080	 56264175	+	55858	NR_073070.1	NA	NA	NA	NA	NA	inter
CUST_20179_PI429285431	2.188022	A	0.90330875	A	2.43633623314514	0	lncRNA	21823-1_{1..1063}	lnc-PPIAL4B-2:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PPIAL4B-2:15	chr1	144481710	144482772	-	lnc-PPIAL4B-2	lnc-PPIAL4B-2:15	ENSG00000236943.1	AL592284.1	NA	NA	NA	inter
CUST_12838_PI429285431	1.2773353	A	1.0914799	A	1.13749121245841	0	lncRNA	14465-1_{1..420}	lnc-INADL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INADL-1:1	chr1	 62113728	 62114147	+	lnc-INADL-1	lnc-INADL-1:1	XLOC_000227	linc-INADL	TM2D1	NA	chr1:62119810-62123990	inter
CUST_29251_PI429285431	6.2858877	P	6.2896976	P	0.99736266245827	0	lncRNA	31002-1_{1..366}	n332338|FJ626411|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558845|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558845|1.5282900|-0.0428874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332338|FJ626411|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558845|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558845|1.5282900|-0.0428874	chr9	 36840555	 36840920	-	NA	NA	NA	NA	PAX5	NA	chr9:36838531-37012672	inner
CUST_30933_PI429285431	3.0421445	P	3.8158488	P	0.584913705771954	0	lncRNA	32721-1_{1..312}	n336999|DQ004397|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000340909|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000340909|0.6788750|-0.1012906	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336999|DQ004397|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000340909|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000340909|0.6788750|-0.1012906	chr2	121493823	121494134	+	NA	NA	NA	NA	GLI2	NA	chr2:121554867-121695034	inner
CUST_45980_PI429285431	0.8998245	A	1.1812643	A	0.822769488949763	0	lncRNA	50270-1_{1..454}	"gi|341915586|ref|XR_132579.1| PREDICTED: Homo sapiens uncharacterized LOC100653000 (LOC100653000), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915586|ref|XR_132579.1| PREDICTED: Homo sapiens uncharacterized LOC100653000 (LOC100653000), misc_RNA"	NA	NA	NA	NA	NA	XR_132579.1	NA	NA	NA	NA	NA	Unknown
CUST_35171_PI429285431	0.9117323	A	0.92046624	A	0.993964382078909	0	lncRNA	36573-1_{1..2386}	n342150|AK056916|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4637|NULL|-1.2355800|-0.3705744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342150|AK056916|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4637|NULL|-1.2355800|-0.3705744	chr6	146216171	146218556	-	NA	NA	NA	NA	SHPRH	NA	chr6:146206171-146228558	inner
CUST_30209_PI429285431	0.89524555	A	0.8972436	A	0.998616015866475	0	lncRNA	31984-1_{1..235}	n335030|AJ564851|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248805|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248805|-1.3268400|-0.2879851	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335030|AJ564851|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248805|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248805|-1.3268400|-0.2879851	chrX	 91040487	 91040721	+	NA	NA	NA	NA	PCDH11X	NA	chrX:91034260-91050722	inner
LNCA_21_P0014533	3.459431	P	3.7235403	P	0.832712681356227	0	lncRNA	XR_110227	XR_110227	XR_110227	NA	NA	LOC100506624	uncharacterized LOC100506624	NA	THC2656489	NA	"PREDICTED: Homo sapiens hypothetical LOC100506624 (LOC100506624), miscRNA [XR_110227]"	chr14:77240389-77240330	hs|14q24.3	Agilent_HUMAN_G3V2	XR_110227	XR_110227	chr14	 77240330	 77240389	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48256_PI429285431	3.9385114	P	3.990444	P	0.964643249850522	0	lncRNA	52119-1_{1..540}	hg19_lincRNAsTranscripts_TCONS_l2_00001954 range=chr1:999875-1001654 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001954 range=chr1:999875-1001654 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	   999875	  1000414	+	NA	NA	NA	NA	AGRN	NA	chr1:989875-991492	inter
CUST_20566_PI429285431	2.0856147	A	1.3577523	A	1.65618335325	0	lncRNA	22207-1_{1..532}	lnc-OR6C70-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR6C70-1:4	chr12	 55873173	 55873704	-	lnc-OR6C70-1	lnc-OR6C70-1:4	ENSG00000258763.1	RP11-110A12.2	OR6C70	NA	chr12:55863173-55863922	inter
CUST_4857_PI429285431	0.90626144	A	0.9066024	A	0.999763692462342	0	lncRNA	4800-1_{1..737}	"transcript_id ""ENST00000554252.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554252.1"" | genecode_v17"	chr14	 62570096	 62570832	-	ENSG00000258903.1	ENST00000554252.1	RP11-355I22.2	RP11-355I22.2-001	SYT16	NA	chr14:62560096-62568427	inter
CUST_41643_PI429285431	8.73628	P	8.827234	P	0.938901683502714	0	lncRNA	43046-1_{1..95}	ENST00000362234 ncrna:miRNA chromosome:GRCh37:10:88024451:88024545:-1 gene:ENSG00000199104 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362234 ncrna:miRNA chromosome:GRCh37:10:88024451:88024545:-1 gene:ENSG00000199104 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 88024451	 88024545	-	ENSG00000199104	ENST00000362234	NA	NA	GRID1	NA	chr10:88014451-88034545	inner
CUST_8513_PI429285431	3.7317932	P	4.412221	P	0.623980219181629	0	lncRNA	10075-2_{3001..3099}	lnc-CLGN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLGN-2:1	chr4	141028895	141028993	-	lnc-CLGN-2	lnc-CLGN-2:1	ENSG00000248331	ENST00000507157	MAML3	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00chr4:141015895-141036668"	NA	inner
CUST_33911_PI429285431	3.7903757	P	3.8465726	P	0.961796179110286	0	lncRNA	35453-1_{1..1496}	n340704|CR618436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3167|NULL|-1.1466200|-0.2475976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340704|CR618436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3167|NULL|-1.1466200|-0.2475976	chr17	 43224096	 43225591	-	NA	NA	NA	NA	ACBD4	NA	chr17:43214096-43221543	inner
CUST_29477_PI429285431	6.1754208	P	6.678443	P	0.705627063525111	0	lncRNA	31235-1_{1..249}	n332897|AF086096|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066975|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066975|-0.7299680|-0.0684066	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332897|AF086096|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066975|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066975|-0.7299680|-0.0684066	chr9	130703895	130704143	+	NA	NA	NA	NA	FAM102A	NA	chr9:130702861-130714144	inner
CUST_19016_PI429285431	6.875215	P	6.993024	P	0.921586187942305	0	lncRNA	20706-1_{1..565}	lnc-KLF14-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KLF14-2:2	chr7	130792479	130793043	-	lnc-KLF14-2	lnc-KLF14-2:2	ENSG00000231721	AC058791.2	MKLN1	NA	chr7:130794855-130802858	inter
CUST_6915_PI429285431	3.134148	A	3.1212325	A	1.00899253447602	0	lncRNA	6867-1_{1..546}	"transcript_id ""ENST00000438850.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438850.1"" | genecode_v17"	chr22	 17097060	 17097605	+	ENSG00000267338.1	ENST00000438850.1	KB-7G2.9	KB-7G2.9-001	NA	NA	NA	inter
CUST_31845_PI429285431	9.363989	P	8.02679	P	2.52660300989939	0	lncRNA	33578-1_{1..1574}	n338393|AK021454|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|789|NULL|0.3477430|-0.3027433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338393|AK021454|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|789|NULL|0.3477430|-0.3027433	chr1	179831572	179833145	-	NA	NA	NA	NA	TOR1AIP2	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50chr1:179821572-179843589"	NA	inner
CUST_8687_PI429285431	0.90154564	A	0.91009873	A	0.994088988957526	0	lncRNA	10235-1_{1..2028}	lnc-ELF5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ELF5-1:1	chr11	 34488330	 34490357	-	lnc-ELF5-1	lnc-ELF5-1:1	ENSG00000245895	ENST00000498946	CAT	"hg19_refFlat_CAT:range=chr11:34460561-344929805'pad=0,hg19_refFlat_CAT:range=chr11:34460561-344929805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80chr11:34478330-34493607"	NA	inner
CUST_9350_PI429285431	0.8885943	A	0.8876985	A	1.00062111405585	0	lncRNA	10854-1_{1..534}	lnc-AC013480.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC013480.1.1-2:1	chr2	 42104790	 42105323	-	lnc-AC013480.1.1-2	lnc-AC013480.1.1-2:1	XLOC_002058	linc-SLC8A1-5	NA	NA	NA	inter
CUST_44965_PI429285431	2.8498347	A	2.9750457	A	0.916869937451806	0	lncRNA	49476-1_{1..684}	"gi|374717347|ref|NR_046299.1| Homo sapiens postmeiotic segregation increased 2 pseudogene 4 (PMS2P4), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374717347|ref|NR_046299.1| Homo sapiens postmeiotic segregation increased 2 pseudogene 4 (PMS2P4), transcript variant 3, non-coding RNA"	Chr7	 66741118	 66741801	-	5382	NR_046299.1	NA	NA	NA	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_35668_PI429285431	7.215624	P	8.606928	P	0.381220075397484	0	lncRNA	37089-1_{1..1854}	n342827|AK130538|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5330|NULL|0.6646930|-0.2834529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342827|AK130538|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5330|NULL|0.6646930|-0.2834529	chr7	151973009	151974862	-	NA	NA	NA	NA	MLL3	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90chr7:151963009-151984416"	NA	inner
CUST_4389_PI429285431	1.4753268	A	1.053665	A	1.33946956398207	0	lncRNA	4340-1_{1..271}	"transcript_id ""ENST00000549896.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549896.1"" | genecode_v17"	chr12	 97417799	 97418069	+	ENSG00000257470.1	ENST00000549896.1	RP11-397H6.1	RP11-397H6.1-001	NA	NA	NA	inter
LNCA_21_P0001532	0.9037716	A	0.8985652	A	1.00361532104518	0	lncRNA	TCONS_00001560	NA	NA	NA	NA	XLOC_000901	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000901), lincRNA [TCONS_00001560]"	chr1:87819061-87819002	hs|1p22.3	Agilent_HUMAN_G3V2	TCONS_00001560	TCONS_00001560	chr1	 87819002	 87819061	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34344_PI429285431	1.4274337	A	0.89125335	A	1.45012810074863	0	lncRNA	35836-1_{1..1745}	n341215|BC043567|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3683|NULL|-0.9288850|-0.2025108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341215|BC043567|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3683|NULL|-0.9288850|-0.2025108	chr7	 28279502	 28281246	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002577	2.467659	A	3.1053789	P	0.642727942589502	0	lncRNA	TCONS_00004713	NA	NA	NA	NA	XLOC_001387	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001387), lincRNA [TCONS_00004713]"	chr2:21319362-21319421	hs|2p24.1	Agilent_HUMAN_G3V2	TCONS_00004713	TCONS_00004713	chr2	 21319362	 21319421	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32036_PI429285431	6.50391	P	6.2295914	P	1.20942273125933	0	lncRNA	33753-4_{9001..12000}	n338599|D84239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1005|NULL|36.1234000|-0.1103645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338599|D84239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1005|NULL|36.1234000|-0.1103645	chr19	 40362970	 40365969	-	NA	NA	NA	NA	FCGBP	NA	chr19:40353963-40440533	inner
CUST_2185_PI429285431	1.1565907	A	0.9047594	A	1.19071760593557	0	lncRNA	2177-1_{1..810}	"transcript_id ""ENST00000504280.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504280.1"" | genecode_v17"	chr5	 68322582	 68323391	-	ENSG00000249352.2	ENST00000504280.1	RP11-141O11.2	RP11-141O11.2-002	NA	NA	NA	inter
CUST_36678_PI429285431	2.3638325	A	2.9965022	A	0.644981774754142	0	lncRNA	37863-1_{1..883}	n345169|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_718|NULL|-1.2642800|-0.2346739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345169|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_718|NULL|-1.2642800|-0.2346739	chr12	 13010016	 13010898	+	NA	NA	NA	NA	NA	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-33.23"	NA	inter
CUST_48721_PI429285431	6.17958	P	6.597184	P	0.748666964008154	0	lncRNA	52563-1_{1..1051}	hg19_lincRNAsTranscripts_TCONS_l2_00015959 range=chr2:130769505-130793183 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015959 range=chr2:130769505-130793183 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	130769505	130770555	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28249_PI429285431	1.1185656	A	0.9206488	A	1.14704087264889	0	lncRNA	29885-1_{1..628}	n325542|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255325|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255325|-0.2202770|-0.1870060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325542|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255325|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255325|-0.2202770|-0.1870060	chr17	 65469442	 65470069	+	NA	NA	NA	NA	PITPNC1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00chr17:65459442-65501209"	NA	inner
CUST_45906_PI429285431	1.0459404	A	0.9926571	A	1.03762367326537	0	lncRNA	50217-1_{1..3000}	"gi|222080056|ref|NR_026691.1| Homo sapiens interleukin 10 receptor, alpha (IL10RA), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|222080056|ref|NR_026691.1| Homo sapiens interleukin 10 receptor, alpha (IL10RA), transcript variant 2, non-coding RNA"	Chr11	117857106	117860105	+	3587	NR_026691.1	NA	NA	NA	NA	NA	inter
CUST_5634_PI429285431	1.0906881	A	0.92275554	A	1.12344738530586	0	lncRNA	5562-1_{1..772}	"transcript_id ""ENST00000566729.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566729.1"" | genecode_v17"	chr16	 79784589	 79785360	-	ENSG00000261390.1	ENST00000566729.1	RP11-345M22.2	RP11-345M22.2-001	NA	NA	NA	inter
CUST_4444_PI429285431	3.903216	P	4.1653285	P	0.833866017203276	0	lncRNA	4394-1_{1..1059}	"transcript_id ""ENST00000543167.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000543167.1"" | genecode_v17"	chr12	122233896	122234954	-	ENSG00000212694.4	ENST00000543167.1	AC084018.1	AC084018.1-009	SETD1B	NA	chr12:122242638-122250308	inter
CUST_18588_PI429285431	2.7545092	A	3.1075113	P	0.78295315658199	0	lncRNA	20295-1_{1..921}	lnc-AC130352.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC130352.1-1:2	chr8	 12225748	 12226668	+	lnc-AC130352.1-1	lnc-AC130352.1-1:2	ENSG00000227888	FAM66A	NA	NA	NA	inter
LNCA_21_P0007563	4.6160493	P	4.811021	P	0.873590032147658	0	lncRNA	TCONS_00021139	NA	NA	NA	NA	XLOC_009765	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009765), lincRNA [TCONS_00021139]"	chr12:54544622-54546455	hs|12q13.13	Agilent_HUMAN_G3V2	TCONS_00021139	TCONS_00021139	chr12	 54544622	 54546455	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21242_PI429285431	1.6209673	A	0.9117898	A	1.63487178880517	0	lncRNA	22868-1_{1..559}	lnc-CA1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CA1-1:2	chr8	 86376457	 86377015	-	lnc-CA1-1	lnc-CA1-1:2	ENSG00000253549.1	RP11-317J10.2	CA2	"hg19_refFlat_CA3:range=chr8:86351139-863603825'pad=0,hg19_refFlat_CA3:range=chr8:86351139-863603825'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40chr8:86376131-86386562"	NA	inner
CUST_12935_PI429285431	1.7651904	A	0.8830747	A	1.84307617588807	0	lncRNA	14563-1_{1..2640}	lnc-PYDC2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PYDC2-1:2	chr3	191307692	191310331	+	lnc-PYDC2-1	lnc-PYDC2-1:2	XLOC_002968	linc-HRASLS-3	NA	NA	NA	inter
CUST_43278_PI429285431	8.869513	P	8.627511	P	1.18263263971997	0	lncRNA	48096-1_{1..496}	ENST00000602615 havana:sense_intronic chromosome:GRCh37:14:51190495:51190990:-1 gene:ENSG00000270062 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602615 havana:sense_intronic chromosome:GRCh37:14:51190495:51190990:-1 gene:ENSG00000270062 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr14	 51190495	 51190990	-	ENSG00000270062	ENST00000602615	NA	NA	NIN	NA	chr14:51186481-51200990	inner
CUST_25287_PI429285431	3.9199085	P	3.862519	P	1.04058116556506	0	lncRNA	26818-1_{1..440}	lnc-REM2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-REM2-1:2	chr14	 23392288	 23392727	+	lnc-REM2-1	lnc-REM2-1:2	ENSG00000237054.2	PRMT5-AS1	RBM23	"hg19_refFlat_PRMT5:range=chr14:23390113-233985705'pad=0,hg19_refFlat_PRMT5:range=chr14:23390113-233985705'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_PRMT5:range=chr14:23390113-233984345'pad=0,hg19_refFlat_PRMT5:range=chr14:23390113-233984345'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10chr14:23382288-23388396"	NA	inner
CUST_29343_PI429285431	5.6659184	P	4.929194	P	1.66638805153006	0	lncRNA	31095-1_{1..544}	n332585|AB370195|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000409808|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000409808|1.6810300|-0.1326172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332585|AB370195|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000409808|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000409808|1.6810300|-0.1326172	chr8	 26371791	 26372334	+	NA	NA	NA	NA	DPYSL2	NA	chr8:26371709-26451367	inner
CUST_34413_PI429285431	0.89147663	A	0.8922931	A	0.99943422623186	0	lncRNA	35894-1_{1..1502}	n341284|AF131787|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3753|NULL|-0.9454550|-0.2547112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n341284|AF131787|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3753|NULL|-0.9454550|-0.2547112	chr7	101208585	101210086	-	NA	NA	NA	NA	EMID2	"hg19_refFlat_OVCH1:range=chr12:29580504-296506195'pad=0,hg19_refFlat_OVCH1:range=chr12:29580504-296506195'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30chr7:101198585-101202304"	NA	inter
CUST_41022_PI429285431	3.1542284	P	3.2501554	P	0.935670841338815	0	lncRNA	41682-1_{1..578}	n411633|NR_040096|lncRNA|Homosapiens||RefGeneNoncode|NR_040096||3.7557100|-0.1966657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n411633|NR_040096|lncRNA|Homosapiens||RefGeneNoncode|NR_040096||3.7557100|-0.1966657	chr12	 93397533	 93398110	-	NA	NA	NA	NA	NUDT4	NA	chr12:93771701-93781512	inter
CUST_29750_PI429285431	3.5891943	A	3.7969756	A	0.865867813588811	0	lncRNA	31512-1_{1..539}	n333432|BC015396|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000088656|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000088656|1.2375100|-0.1845978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333432|BC015396|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000088656|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000088656|1.2375100|-0.1845978	chr1	197113085	197113623	-	NA	NA	NA	NA	ZBTB41	NA	chr1:197122814-197125665	inner
CUST_3325_PI429285431	0.88797754	A	0.8834057	A	1.00317398446153	0	lncRNA	3304-1_{1..2096}	"transcript_id ""ENST00000505083.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505083.1"" | genecode_v17"	chr8	135862178	135864273	+	ENSG00000251218.1	ENST00000505083.1	RP11-1057B8.2	RP11-1057B8.2-001	NA	NA	NA	inter
CUST_10066_PI429285431	0.90252286	A	1.1131588	A	0.864156227260203	0	lncRNA	11590-1_{1..502}	lnc-ATP6V1H-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP6V1H-2:1	chr8	 54407852	 54408353	-	lnc-ATP6V1H-2	lnc-ATP6V1H-2:1	XLOC_007084	linc-OPRK1-5	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10"	NA	inter
CUST_37637_PI429285431	9.045081	P	9.410546	P	0.776218648975464	0	lncRNA	38732-1_{1..3000}	n346116|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1666|NULL|-1.4661800|-0.2933444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346116|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1666|NULL|-1.4661800|-0.2933444	chr5	  1571957	  1574956	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20780_PI429285431	2.1312294	A	2.4369311	A	0.809048614655921	0	lncRNA	22413-1_{1..2677}	lnc-SYNM-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SYNM-2:1	chr15	 99684622	 99687298	+	lnc-SYNM-2	lnc-SYNM-2:1	ENSG00000261616.1	RP11-6O2.3	TTC23	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TTC23:range=chr15:99678215-997689175'pad=0,hg19_refFlat_TTC23:range=chr15:99678215-997689175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.60chr15:99676528-99695575"	NA	inner
CUST_35438_PI429285431	12.201207	P	12.101512	P	1.07154690297571	0	lncRNA	36844-1_{1..576}	n342502|BC066333|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4996|NULL|-0.4119090|-0.2636439	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342502|BC066333|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4996|NULL|-0.4119090|-0.2636439	chr3	 48481666	 48482241	+	NA	NA	NA	NA	ATRIP	NA	chr3:48488218-48495616	inner
CUST_39694_PI429285431	8.648251	P	8.9758	P	0.79688917238065	0	lncRNA	40634-1_{1..3000}	n405477|NR_002319|lncRNA|Homosapiens||RefGeneNoncode|NR_002319||10.1631000|-0.1346510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405477|NR_002319|lncRNA|Homosapiens||RefGeneNoncode|NR_002319||10.1631000|-0.1346510	chr10	 95717896	 95720895	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007165	0.9071629	A	0.8990292	A	1.00565377381473	0	lncRNA	ENST00000533924	NA	NA	NA	NA	XLOC_009013	NA	ENST00000533924	NA	NA	"BROAD Institute lincRNA (XLOC_009013), lincRNA [TCONS_00019179]"	chr11:287305-288047	hs|11p15.5	Agilent_HUMAN_G3V2	ENST00000533924	ENST00000533924	chr11	   287305	   288047	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11328_PI429285431	1.7404702	A	0.9780554	A	1.69632758294032	0	lncRNA	12891-1_{1..696}	lnc-CALM1-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CALM1-1:11	chr14	 90923363	 90924058	+	lnc-CALM1-1	lnc-CALM1-1:11	XLOC_010902	linc-C14orf159-3	NA	NA	NA	inter
CUST_44700_PI429285431	6.208705	P	5.097524	P	2.16022412360556	0	lncRNA	49257-1_{1..2083}	"gi|221139824|ref|NR_002139.2| Homo sapiens HLA complex group 4 (non-protein coding) (HCG4), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|221139824|ref|NR_002139.2| Homo sapiens HLA complex group 4 (non-protein coding) (HCG4), non-coding RNA"	NT_167249.1	  1096480	  1098562	-	54435	NR_002139.2	NA	NA	NA	"hg19_refFlat_HLA-A:range=chr6_qbl_hap6:1203109-12060255'pad=0,hg19_refFlat_HLA-A:range=chr6_qbl_hap6:1203109-12060255'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.10;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_HLA-G:range=chr6_mcf_hap5:1095901-10984385'pad=0,hg19_refFlat_HLA-G:range=chr6_mcf_hap5:1095901-10984385'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.00;hg19_refFlat_HLA-E:range=chr6_dbb_hap3:1750949-17539985'pad=0,hg19_refFlat_HLA-E:range=chr6_dbb_hap3:1750949-17539985'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40;hg19_refFlat_HLA-E:range=chr6_qbl_hap6:1750224-17532735'pad=0,hg19_refFlat_HLA-E:range=chr6_qbl_hap6:1750224-17532735'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40;hg19_refFlat_HLA-G:range=chr6_mann_hap4:1095951-10984885'pad=0,hg19_refFlat_HLA-G:range=chr6_mann_hap4:1095951-10984885'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.00;hg19_refFlat_HLA-F:range=chr6_mcf_hap5:991775-9938785'pad=0,hg19_refFlat_HLA-F:range=chr6_mcf_hap5:991775-9938785'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_HLA-E:range=chr6_ssto_hap7:1789599-17926485'pad=0,hg19_refFlat_HLA-E:range=chr6_ssto_hap7:1789599-17926485'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40;hg19_refFlat_LOC554223:range=chr6_apd_hap1:1063433-10683895'pad=0,hg19_refFlat_LOC554223:range=chr6_apd_hap1:1063433-10683895'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.20;hg19_refFlat_HLA-C:range=chr6:31236946-312398485'pad=0,hg19_refFlat_HLA-C:range=chr6:31236946-312398485'pad=0 3'pad=0 strand=- repeatMasking=none,-102.00;hg19_refFlat_HLA-A:range=chr6_cox_hap2:1422082-14249845'pad=0,hg19_refFlat_HLA-A:range=chr6_cox_hap2:1422082-14249845'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.10;hg19_refFlat_HLA-E:range=chr6_mcf_hap5:1839173-18422225'pad=0,hg19_refFlat_HLA-E:range=chr6_mcf_hap5:1839173-18422225'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10319385'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10319385'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_HLA-E:range=chr6_mann_hap4:1805387-18084365'pad=0,hg19_refFlat_HLA-E:range=chr6_mann_hap4:1805387-18084365'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40;hg19_refFlat_HLA-E:range=chr6:30457309-304603585'pad=0,hg19_refFlat_HLA-E:range=chr6:30457309-304603585'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40;hg19_refFlat_HLA-A:range=chr6_apd_hap1:1150217-11531195'pad=0,hg19_refFlat_HLA-A:range=chr6_apd_hap1:1150217-11531195'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.10;hg19_refFlat_HLA-B:range=chr6:31322260-313249355'pad=0,hg19_refFlat_HLA-B:range=chr6:31322260-313249355'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30;hg19_refFlat_HLA-A:range=chr6_mcf_hap5:1150182-12951355'pad=0,hg19_refFlat_HLA-A:range=chr6_mcf_hap5:1150182-12951355'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_LOC554223:range=chr6_ssto_hap7:1097457-11025275'pad=0,hg19_refFlat_LOC554223:range=chr6_ssto_hap7:1097457-11025275'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.20;hg19_refFlat_HLA-G:range=chr6_ssto_hap7:1133174-11357115'pad=0,hg19_refFlat_HLA-G:range=chr6_ssto_hap7:1133174-11357115'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_HLA-G:range=chr6:29795622-297981595'pad=0,hg19_refFlat_HLA-G:range=chr6:29795622-297981595'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.00;hg19_refFlat_HLA-C:range=chr6_mcf_hap5:2617482-26203755'pad=0,hg19_refFlat_HLA-C:range=chr6_mcf_hap5:2617482-26203755'pad=0 3'pad=0 strand=- repeatMasking=none,-102.00;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12103735'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12103735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9946895'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9946895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_HLA-C:range=chr6_dbb_hap3:2532552-25354465'pad=0,hg19_refFlat_HLA-C:range=chr6_dbb_hap3:2532552-25354465'pad=0 3'pad=0 strand=- repeatMasking=none,-95.70;hg19_refFlat_LOC554223:range=chr6_mcf_hap5:1060244-10652515'pad=0,hg19_refFlat_LOC554223:range=chr6_mcf_hap5:1060244-10652515'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.20;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9950665'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9950665'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_HLA-B:range=chr6_mann_hap4:2668715-26713905'pad=0,hg19_refFlat_HLA-B:range=chr6_mann_hap4:2668715-26713905'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_LOC554223:range=chr6:29759785-297649715'pad=0,hg19_refFlat_LOC554223:range=chr6:29759785-297649715'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.20;hg19_refFlat_HLA-G:range=chr6_cox_hap2:1311513-13140505'pad=0,hg19_refFlat_HLA-G:range=chr6_cox_hap2:1311513-13140505'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_LOC554223:range=chr6_dbb_hap3:1060578-10655945'pad=0,hg19_refFlat_LOC554223:range=chr6_dbb_hap3:1060578-10655945'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.20;hg19_refFlat_HLA-F:range=chr6:29691241-296941845'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296941845'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_HLA-B:range=chr6_mcf_hap5:2702040-27047285'pad=0,hg19_refFlat_HLA-B:range=chr6_mcf_hap5:2702040-27047285'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_HLA-C:range=chr6_ssto_hap7:2570423-25733175'pad=0,hg19_refFlat_HLA-C:range=chr6_ssto_hap7:2570423-25733175'pad=0 3'pad=0 strand=- repeatMasking=none,-102.00;hg19_refFlat_LOC554223:range=chr6_qbl_hap6:1060587-10655435'pad=0,hg19_refFlat_LOC554223:range=chr6_qbl_hap6:1060587-10655435'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.20;hg19_refFlat_HLA-B:range=chr6_cox_hap2:2834949-28376235'pad=0,hg19_refFlat_HLA-B:range=chr6_cox_hap2:2834949-28376235'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30;hg19_refFlat_HLA-G:range=chr6_qbl_hap6:1096207-10987445'pad=0,hg19_refFlat_HLA-G:range=chr6_qbl_hap6:1096207-10987445'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_HLA-G:range=chr6_dbb_hap3:1096243-10987805'pad=0,hg19_refFlat_HLA-G:range=chr6_dbb_hap3:1096243-10987805'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.00;hg19_refFlat_HLA-F:range=chr6_mcf_hap5:991775-13591805'pad=0,hg19_refFlat_HLA-F:range=chr6_mcf_hap5:991775-13591805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LOC554223:range=chr6_mann_hap4:1060204-10653135'pad=0,hg19_refFlat_LOC554223:range=chr6_mann_hap4:1060204-10653135'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.20;hg19_refFlat_LOC554223:range=chr6_cox_hap2:1275895-12808515'pad=0,hg19_refFlat_LOC554223:range=chr6_cox_hap2:1275895-12808515'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.20;hg19_refFlat_HLA-C:range=chr6_qbl_hap6:2530195-25330895'pad=0,hg19_refFlat_HLA-C:range=chr6_qbl_hap6:2530195-25330895'pad=0 3'pad=0 strand=- repeatMasking=none,-102.00;hg19_refFlat_HLA-B:range=chr6_ssto_hap7:2656019-26586945'pad=0,hg19_refFlat_HLA-B:range=chr6_ssto_hap7:2656019-26586945'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_HLA-E:range=chr6_cox_hap2:1969373-19724225'pad=0,hg19_refFlat_HLA-E:range=chr6_cox_hap2:1969373-19724225'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40;hg19_refFlat_HLA-B:range=chr6_qbl_hap6:2615766-26184515'pad=0,hg19_refFlat_HLA-B:range=chr6_qbl_hap6:2615766-26184515'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_HLA-C:range=chr6_mann_hap4:2583839-25867335'pad=0,hg19_refFlat_HLA-C:range=chr6_mann_hap4:2583839-25867335'pad=0 3'pad=0 strand=- repeatMasking=none,-102.00;hg19_refFlat_HLA-A:range=chr6_mann_hap4:1202716-12056335'pad=0,hg19_refFlat_HLA-A:range=chr6_mann_hap4:1202716-12056335'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_HLA-A:range=chr6:29910331-299132325'pad=0,hg19_refFlat_HLA-A:range=chr6:29910331-299132325'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.10;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9950435'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9950435'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_HLA-A:range=chr6_dbb_hap3:1203692-12066085'pad=0,hg19_refFlat_HLA-A:range=chr6_dbb_hap3:1203692-12066085'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_HLA-C:range=chr6_cox_hap2:2750201-27531035'pad=0,hg19_refFlat_HLA-C:range=chr6_cox_hap2:2750201-27531035'pad=0 3'pad=0 strand=- repeatMasking=none,-102.00;hg19_refFlat_HLA-A:range=chr6_ssto_hap7:1239666-12425835'pad=0,hg19_refFlat_HLA-A:range=chr6_ssto_hap7:1239666-12425835'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.10"	NA	Unknown
LNCA_21_P0012362	1.5579863	A	0.90251917	A	1.57512588033997	0	lncRNA	TCONS_l2_00018429	NA	NA	NA	NA	XLOC_l2_009613	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009613), lincRNA [TCONS_l2_00018429]"	chr3:6004909-6004968	hs|3p26.1	Agilent_HUMAN_G3V2	TCONS_l2_00018429	TCONS_l2_00018429	chr3	  6004909	  6004968	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3703_PI429285431	5.287981	P	5.343917	P	0.961970128078693	0	lncRNA	3671-1_{1..281}	"transcript_id ""ENST00000599605.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599605.1"" | genecode_v17"	chr10	 61496956	 61497236	-	ENSG00000227877.2	ENST00000599605.1	RP11-59J5.1	RP11-59J5.1-004	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
CUST_16949_PI429285431	8.16979	P	8.07179	P	1.07028869842662	0	lncRNA	18661-2_{3001..3350}	lnc-USP34-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-USP34-1:5	chr2	 61374906	 61375255	-	lnc-USP34-1	lnc-USP34-1:5	XLOC_002111	linc-PUS10	KIAA1841	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70chr2:61361906-61365169"	NA	inter
CUST_31887_PI429285431	1.7909901	A	2.0866816	A	0.814681752655589	0	lncRNA	33619-1_{1..1164}	n338442|AJ277915|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|839|NULL|4.1561800|-0.0597001	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338442|AJ277915|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|839|NULL|4.1561800|-0.0597001	chr1	197881661	197882824	+	NA	NA	NA	NA	LHX9	NA	chr1:197881635-197899273	inner
CUST_28434_PI429285431	0.89643186	A	0.89606225	A	1.00025622694993	0	lncRNA	30093-1_{1..498}	n325758|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044594|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044594|-1.3341100|-0.4005137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325758|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044594|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044594|-1.3341100|-0.4005137	chr13	 37526056	 37526553	-	NA	NA	NA	NA	ALG5	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60chr13:37523907-37543590"	NA	inner
CUST_7476_PI429285431	1.3739814	A	0.91206396	A	1.3773712223637	0	lncRNA	9118-1_{1..2415}	lnc-NUDT11-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUDT11-3:1	chrX	 51487415	 51489829	-	lnc-NUDT11-3	lnc-NUDT11-3:1	ENSG00000245461	ENST00000502175	GSPT2	"hg19_refFlat_GSPT2:range=chrX:51486723-514886095'pad=0,hg19_refFlat_GSPT2:range=chrX:51486723-514886095'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.00;hg19_refFlat_GSPT1:range=chr16:11966976-120095775'pad=0,hg19_refFlat_GSPT1:range=chr16:11966976-120095775'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_GSPT1:range=chr16:11966976-119917185'pad=0,hg19_refFlat_GSPT1:range=chr16:11966976-119917185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chrX:51486481-51489328"	NA	inner
CUST_38703_PI429285431	2.8233976	A	2.4734735	A	1.2744935746129	0	lncRNA	39698-1_{1..1302}	n384112|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zxl.3||3.7635100|-0.1099289	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384112|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zxl.3||3.7635100|-0.1099289	chr22	 23980676	 23981977	-	NA	NA	NA	NA	RGL4	NA	chr22:24033048-24041363	inter
CUST_38342_PI429285431	2.8955843	A	0.8927983	A	4.00773189534001	0	lncRNA	39388-1_{1..1525}	n382072|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vih.1||0.3410980|-0.2173481	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n382072|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vih.1||0.3410980|-0.2173481	chr13	 64402979	 64404503	-	NA	NA	NA	NA	LOC100507505	NA	chr13:64392979-64407126	inter
CUST_6235_PI429285431	3.0565133	P	3.314447	P	0.836284831050738	0	lncRNA	6160-1_{1..637}	"transcript_id ""ENST00000417298.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417298.1"" | genecode_v17"	chr18	 61814443	 61815079	+	ENSG00000236392.2	ENST00000417298.1	AC100848.1	AC100848.1-001	NA	NA	NA	inter
CUST_33334_PI429285431	3.2285388	P	3.2156324	A	1.00898617013508	0	lncRNA	34915-1_{1..2312}	n340051|AK129970|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2506|NULL|-0.7956890|-0.2596346	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340051|AK129970|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2506|NULL|-0.7956890|-0.2596346	chr4	 54596072	 54598383	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40"	NA	inter
CUST_27624_PI429285431	8.593693	P	8.3381605	P	1.19377628559435	0	lncRNA	29202-1_{1..683}	n324828|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171733|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171733|-1.2521200|-0.3191036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324828|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171733|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171733|-1.2521200|-0.3191036	chr21	 28738740	 28739422	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31105_PI429285431	4.648694	P	4.818998	P	0.888655406863462	0	lncRNA	32898-1_{1..395}	n337393|DQ656038|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393151|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393151|-1.1132700|-0.0835090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337393|DQ656038|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393151|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393151|-1.1132700|-0.0835090	chr19	 54960789	 54961183	-	NA	NA	NA	NA	LENG8	"hg19_refFlat_LENG8:range=chr19:54962522-549721085'pad=0,hg19_refFlat_LENG8:range=chr19:54962522-549721085'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70chr19:54960065-54973196"	NA	inner
CUST_25967_PI429285431	2.7784193	A	3.231822	P	0.730318306800355	0	lncRNA	27487-1_{1..492}	lnc-NUDCD2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUDCD2-2:1	chr5	162864189	162864680	-	lnc-NUDCD2-2	lnc-NUDCD2-2:1	ENSG00000250061.1	RP11-541P9.3	CCNG1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60chr5:162864577-162872022"	NA	inter
CUST_6481_PI429285431	3.7984138	P	4.082654	P	0.821173968869877	0	lncRNA	6423-1_{1..1000}	"transcript_id ""ENST00000428426.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428426.2"" | genecode_v17"	chr19	 35923859	 35924858	-	ENSG00000232680.2	ENST00000428426.2	AC002511.3	AC002511.3-001	NA	NA	NA	inter
CUST_16334_PI429285431	0.9083765	A	0.91543245	A	0.995121128697345	0	lncRNA	18035-1_{1..255}	lnc-RP11-116D17.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-116D17.1.1-3:1	chr12	115542674	115542928	+	lnc-RP11-116D17.1.1-3	lnc-RP11-116D17.1.1-3:1	XLOC_009893	linc-MAP1LC3B2-6	NA	NA	NA	inter
CUST_44971_PI429285431	6.4067836	P	6.036254	P	1.29282732848981	0	lncRNA	49482-1_{1..870}	"gi|197313647|ref|NR_024109.1| Homo sapiens Shwachman-Bodian-Diamond syndrome pseudogene 1 (SBDSP1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|197313647|ref|NR_024109.1| Homo sapiens Shwachman-Bodian-Diamond syndrome pseudogene 1 (SBDSP1), transcript variant 4, non-coding RNA"	Chr7	 72299952	 72300821	+	155370	NR_024109.1	NA	NA	NA	NA	NA	inter
CUST_23215_PI429285431	2.6042569	A	1.2069125	A	2.63416259607021	0	lncRNA	24787-1_{1..557}	lnc-SLC5A8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC5A8-1:1	chr12	101432804	101433360	-	lnc-SLC5A8-1	lnc-SLC5A8-1:1	ENSG00000258007.1	RP11-350G24.1	ANO4	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr12:101422804-101442872"	NA	inner
CUST_16928_PI429285431	2.5888453	A	3.2418737	P	0.635943984449621	0	lncRNA	18640-1_{1..950}	lnc-CLEC4D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLEC4D-1:1	chr12	  8718119	  8719068	+	lnc-CLEC4D-1	lnc-CLEC4D-1:1	XLOC_009643	linc-RIMKLB	NA	NA	NA	inter
CUST_49329_PI429285431	0.9081631	A	0.921537	A	0.990772753660819	0	lncRNA	53144-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00022345 range=chr5:67088978-67107273 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022345 range=chr5:67088978-67107273 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 67088978	 67091977	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6975_PI429285431	2.0083551	A	1.8535085	A	1.11330323576302	0	lncRNA	6923-1_{1..298}	"transcript_id ""ENST00000436395.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436395.1"" | genecode_v17"	chr22	 32366848	 32367145	+	ENSG00000230866.1	ENST00000436395.1	CTA-342B11.2	CTA-342B11.2-002	NA	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10"	NA	inter
CUST_2950_PI429285431	1.299641	A	1.0223733	A	1.21189751381762	0	lncRNA	2931-1_{1..430}	"transcript_id ""ENST00000453187.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453187.1"" | genecode_v17"	chr7	153102578	153103007	-	ENSG00000234722.3	ENST00000453187.1	AC073236.3	AC073236.3-002	NA	NA	NA	inter
CUST_22030_PI429285431	11.164369	P	11.3486595	P	0.88008178310723	0	lncRNA	23639-1_{1..766}	lnc-TIGD1L2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIGD1L2-1:3	chr9	 32566389	 32567154	+	lnc-TIGD1L2-1	lnc-TIGD1L2-1:3	ENSG00000235453.3	TOPORS-AS1	NDUFB6	"hg19_refFlat_DFFB:range=chr1:3774168-38003055'pad=0,hg19_refFlat_DFFB:range=chr1:3774168-38003055'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30chr9:32556389-32573182"	NA	inner
LNCA_21_P0001981	0.91218865	A	0.9233396	A	0.992300544285507	0	lncRNA	ENST00000413385	NA	NA	NA	NA	XLOC_001906	NA	ENST00000413385	THC2708809	NA	"BROAD Institute lincRNA (XLOC_001906), lincRNA [TCONS_00003131]"	chr2:237662871-237662930	hs|2q37.3	Agilent_HUMAN_G3V2	ENST00000413385	ENST00000413385	chr2	237662871	237662930	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00322330	6.148922	P	6.0703983	P	1.05593695443489	0	lncRNA	ENST00000493473	NA	NA	NA	NA	XLOC_l2_010415	NA	ENST00000493473	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010415), lincRNA [TCONS_l2_00020248]"	chr3:162937942-162937883	hs|3q26.1	Agilent_HUMAN_G3V2	ENST00000493473	ENST00000493473	chr3	162937883	162937942	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39311_PI429285431	0.9250957	A	0.9725707	A	0.967628387719283	0	lncRNA	40278-1_{1..920}	n386338|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010hou.1||4.9593200|-0.2781444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n386338|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010hou.1||4.9593200|-0.2781444	chr3	 94657106	 94658025	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41324_PI429285431	0.89746326	A	0.90832263	A	0.992501116287842	0	lncRNA	42366-1_{1..72}	ENST00000578874 ncrna:miRNA chromosome:GRCh37:HSCHR19LRC_PGF2_CTG1:54785989:54786060:1 gene:ENSG00000263702 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578874 ncrna:miRNA chromosome:GRCh37:HSCHR19LRC_PGF2_CTG1:54785989:54786060:1 gene:ENSG00000263702 gene_biotype:miRNA transcript_biotype:miRNA	chrHSCHR19LRC_PGF2_CTG1	 54785989	 54786060	+	ENSG00000263702	ENST00000578874	NA	NA	NA	NA	NA	Unknown
CUST_4498_PI429285431	3.8080897	P	3.8117948	P	0.997435115333305	0	lncRNA	4447-1_{1..556}	"transcript_id ""ENST00000535247.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535247.1"" | genecode_v17"	chr12	128082713	128083268	+	ENSG00000255945.1	ENST00000535247.1	RP11-351O2.1	RP11-351O2.1-001	NA	NA	NA	inter
CUST_29307_PI429285431	0.9101911	A	0.9147067	A	0.996874917857893	0	lncRNA	31058-1_{1..299}	n332488|EF405804|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468777|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468777|0.6017400|-0.1141703	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332488|EF405804|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468777|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468777|0.6017400|-0.1141703	chr15	 32323187	 32323485	+	NA	NA	NA	NA	CHRNA7	NA	chr15:32322691-32414531	inter
CUST_31710_PI429285431	3.9816072	P	3.8146534	P	1.12268546929238	0	lncRNA	33453-1_{1..317}	n338239|S73288|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|631|NULL|-1.1208500|-0.3070247	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338239|S73288|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|631|NULL|-1.1208500|-0.3070247	chr1	152957972	152958288	+	NA	NA	NA	NA	SPRR1A	NA	chr1:152956564-152958290	inner
CUST_31741_PI429285431	8.399678	P	8.508692	P	0.927221548577775	0	lncRNA	33482-1_{1..1020}	n338278|AK098628|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|671|NULL|-1.0903400|-0.1680458	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338278|AK098628|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|671|NULL|-1.0903400|-0.1680458	chr19	  4246335	  4247354	-	NA	NA	NA	NA	CCDC94	NA	chr19:4247111-4257355	inner
CUST_5756_PI429285431	10.870972	P	10.421734	P	1.36531893464665	0	lncRNA	5681-1_{1..757}	"transcript_id ""ENST00000583141.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583141.1"" | genecode_v17"	chr17	 18994382	 18995138	-	ENSG00000263394.1	ENST00000583141.1	RP11-160E2.19	RP11-160E2.19-001	LOC100132472	NA	chr17:18986174-18997365	inter
CUST_20935_PI429285431	4.4020023	P	4.039071	P	1.28603624194093	0	lncRNA	22566-1_{1..622}	lnc-TRIM45-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM45-1:2	chr1	117575012	117575633	-	lnc-TRIM45-1	lnc-TRIM45-1:2	ENSG00000236137.1	RP11-27K13.3	CD101	NA	chr1:117565012-117579167	inner
CUST_18286_PI429285431	1.6672156	A	3.572829	P	0.266902847070689	0	lncRNA	20017-1_{1..1880}	lnc-AC142381.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC142381.1-2:2	chr16	 32266212	 32268091	+	lnc-AC142381.1-2	lnc-AC142381.1-2:2	ENSG00000205456	AC133485.1	LOC729264	NA	chr16:32256212-32267243	inner
CUST_28544_PI429285431	1.3139822	A	1.6103941	A	0.814275048389674	0	lncRNA	30216-1_{1..463}	n325893|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050227|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050227|-1.3447500|-0.3224929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325893|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050227|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050227|-1.3447500|-0.3224929	chr10	107890011	107890473	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10957_PI429285431	1.7124946	A	1.1343504	A	1.4929275966753	0	lncRNA	12498-1_{1..490}	lnc-DHX37-10:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-10:15	chr12	127221330	127221819	-	lnc-DHX37-10	lnc-DHX37-10:15	XLOC_010244	linc-DHX37-4	NA	NA	NA	inter
CUST_14146_PI429285431	1.194483	A	0.9324461	A	1.19917058474197	0	lncRNA	15797-1_{1..1107}	lnc-CPEB2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPEB2-5:1	chr4	 14002445	 14003551	+	lnc-CPEB2-5	lnc-CPEB2-5:1	XLOC_003463	linc-CPEB2-4	NA	NA	NA	inter
LNCA_21_P0007566	6.1683254	P	6.1218176	P	1.03276198322197	0	lncRNA	TCONS_00020445	NA	NA	NA	NA	XLOC_009777	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009777), lincRNA [TCONS_00020445]"	chr12:57482402-57482461	hs|12q13.3	Agilent_HUMAN_G3V2	TCONS_00020445	TCONS_00020445	chr12	 57482402	 57482461	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45594_PI429285431	10.157436	P	10.358014	P	0.870201856585171	0	lncRNA	49983-1_{1..1180}	"gi|395132481|ref|NR_073030.1| Homo sapiens translocase of inner mitochondrial membrane 23 homolog (yeast) (TIMM23), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|395132481|ref|NR_073030.1| Homo sapiens translocase of inner mitochondrial membrane 23 homolog (yeast) (TIMM23), transcript variant 3, non-coding RNA"	NW_003871068.1	   243568	   244747	+	100287932	NR_073030.1	NA	NA	NA	NA	NA	Unknown
CUST_47197_PI429285431	5.085026	P	4.711396	P	1.29560864525356	0	lncRNA	51271-1_{1..1837}	"gi|302488598|ref|NR_036521.1| Homo sapiens uncharacterized LOC100128252 (LOC100128252), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|302488598|ref|NR_036521.1| Homo sapiens uncharacterized LOC100128252 (LOC100128252), transcript variant 1, non-coding RNA"	Chr19	 56989243	 56991079	+	100128252	NR_036521.1	NA	NA	NA	NA	NA	inter
CUST_41689_PI429285431	0.91048574	A	0.90453005	A	1.0041367023618	0	lncRNA	43159-1_{1..88}	ENST00000385252 ncrna:miRNA chromosome:GRCh37:19:54233092:54233179:1 gene:ENSG00000207987 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385252 ncrna:miRNA chromosome:GRCh37:19:54233092:54233179:1 gene:ENSG00000207987 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54233092	 54233179	+	ENSG00000207987	ENST00000385252	NA	NA	NA	NA	NA	inter
CUST_30854_PI429285431	3.2769957	A	3.31056	A	0.977003543611694	0	lncRNA	32642-1_{1..222}	n336848|AY373755|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331810|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331810|-1.1932600|-0.2834773	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336848|AY373755|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331810|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331810|-1.1932600|-0.2834773	chr11	112123113	112123334	-	NA	NA	NA	NA	C11orf34	NA	chr11:112113113-112131583	inner
LNCA_21_P0013068	2.2765694	A	3.045105	P	0.587013016783676	0	lncRNA	THC2668742	NA	NA	NA	NA	XLOC_l2_012919	NA	NA	THC2668742	NA	"BROAD Institute lincRNA (XLOC_l2_012919), lincRNA [TCONS_l2_00024658]"	chr6:026325189-026325130	hs|6p22.2	Agilent_HUMAN_G3V2	THC2668742	THC2668742	chr6	 26325130	 26325189	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16390_PI429285431	1.2726836	A	0.8936	A	1.30051550547268	0	lncRNA	18087-1_{1..3000}	lnc-PREX1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PREX1-3:1	chr20	 47101365	 47104364	-	lnc-PREX1-3	lnc-PREX1-3:1	XLOC_013778	linc-SULF2-9	NA	NA	NA	inter
CUST_23774_PI429285431	1.047389	A	0.9044953	A	1.10411749108298	0	lncRNA	25337-1_{1..525}	lnc-B3GAT2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-B3GAT2-2:1	chr6	 72037681	 72038205	-	lnc-B3GAT2-2	lnc-B3GAT2-2:1	ENSG00000232295.1	RP11-154D6.1	NA	NA	NA	inter
CUST_6704_PI429285431	2.3904073	A	2.5462983	A	0.897577862844102	0	lncRNA	6653-1_{1..750}	"transcript_id ""ENST00000437920.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437920.1"" | genecode_v17"	chr20	 46020673	 46021422	-	ENSG00000224565.1	ENST00000437920.1	RP1-148H17.1	RP1-148H17.1-001	NA	NA	NA	inter
CUST_4910_PI429285431	0.8897455	A	1.0818714	A	0.875314940050932	0	lncRNA	4852-1_{1..637}	"transcript_id ""ENST00000555001.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000555001.1"" | genecode_v17"	chr14	 81908331	 81908967	-	ENSG00000258675.1	ENST00000555001.1	RP11-299L17.3	RP11-299L17.3-001	NA	NA	NA	inter
CUST_47870_PI429285431	9.467967	P	9.572427	P	0.930153033258371	0	lncRNA	51769-1_{1..2388}	"gi|410171318|ref|XR_171195.1| PREDICTED: Homo sapiens protein disulfide-isomerase A3-like (LOC101060561), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410171318|ref|XR_171195.1| PREDICTED: Homo sapiens protein disulfide-isomerase A3-like (LOC101060561), misc_RNA"	NA	NA	NA	NA	NA	XR_171195.1	NA	NA	NA	NA	NA	Unknown
CUST_17694_PI429285431	4.0248904	P	4.504604	P	0.717119970636313	0	lncRNA	19423-1_{1..703}	lnc-EEFSEC-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EEFSEC-2:1	chr3	128193325	128194027	+	lnc-EEFSEC-2	lnc-EEFSEC-2:1	XLOC_002808	linc-RAB7A-2	GATA2	NA	chr3:128198265-128203950	inter
CUST_48432_PI429285431	11.61556	P	11.533273	P	1.05869498355201	0	lncRNA	52284-1_{1..520}	hg19_lincRNAsTranscripts_TCONS_l2_00001532 range=chr1:150853705-150859519 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001532 range=chr1:150853705-150859519 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	150853705	150854224	-	NA	NA	NA	NA	ARNT	NA	chr1:150843705-150849244	inter
CUST_48921_PI429285431	0.9169913	A	0.90550095	A	1.0079963047362	0	lncRNA	52764-1_{1..455}	hg19_lincRNAsTranscripts_TCONS_l2_00019885 range=chr3:129964291-129967295 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019885 range=chr3:129964291-129967295 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	129964291	129964745	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10127_PI429285431	0.8850389	A	0.88467467	A	1.00025249686954	0	lncRNA	11652-1_{1..3000}	lnc-GALNTL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GALNTL2-1:1	chr3	 16278167	 16281166	+	lnc-GALNTL2-1	lnc-GALNTL2-1:1	XLOC_002585	linc-OXNAD1	GALNTL2	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-16.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr3:16268167-16271253"	NA	inter
CUST_24935_PI429285431	0.9014812	A	0.89212203	A	1.00650837029028	0	lncRNA	26475-1_{1..526}	lnc-MRPS14-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPS14-2:2	chr1	174917860	174918385	-	lnc-MRPS14-2	lnc-MRPS14-2:2	ENSG00000229531.1	RP1-102G20.5	RABGAP1L	NA	chr1:174907860-174927327	inner
CUST_51995_PI429285431	1.3714719	A	0.91698366	A	1.37029664028015	0	lncRNA	55531-1_{1..1200}	hg19_lincRNAsTranscripts_TCONS_l2_00017242 range=chr21:40362807-40378641 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017242 range=chr21:40362807-40378641 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 40362807	 40364006	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008705	4.553479	P	5.0773335	P	0.695511126642361	0	lncRNA	TCONS_00023574	NA	NA	NA	NA	XLOC_011397	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011397), lincRNA [TCONS_00023574]"	chr15:22541615-22541556	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023574	TCONS_00023574	chr15	 22541556	 22541615	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13632_PI429285431	7.3661933	P	7.023837	P	1.26782559615658	0	lncRNA	15271-1_{1..815}	lnc-AC142381.1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC142381.1-2:6	chr16	 32266212	 32267026	+	lnc-AC142381.1-2	lnc-AC142381.1-2:6	XLOC_011693	linc-TP53TG3B-6	LOC729264	NA	chr16:32256212-32267243	inner
LNCA_21_P0005523	0.9005295	A	1.5925272	A	0.618996132245411	0	lncRNA	TCONS_00013936	NA	NA	NA	NA	XLOC_006578	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006578), lincRNA [TCONS_00013936]"	chr7:117792945-117792886	hs|7q31.31	Agilent_HUMAN_G3V2	TCONS_00013936	TCONS_00013936	chr7	117792886	117792945	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33890_PI429285431	2.8776116	A	0.88960564	A	3.96688331073786	0	lncRNA	35433-1_{1..1983}	n340681|AK024346|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3144|NULL|-0.6294880|-0.2777255	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340681|AK024346|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3144|NULL|-0.6294880|-0.2777255	chr5	149232599	149234581	+	NA	NA	NA	NA	PDE6A	NA	chr5:149237519-149244584	inner
CUST_15497_PI429285431	0.9101135	A	0.8963744	A	1.00956870856254	0	lncRNA	17187-1_{1..396}	lnc-PRRC2C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRRC2C-1:1	chr1	171592981	171593376	+	lnc-PRRC2C-1	lnc-PRRC2C-1:1	XLOC_000462	linc-METTL13-2	NA	NA	NA	inter
CUST_10614_PI429285431	1.2994063	A	1.5116436	A	0.863197564858881	0	lncRNA	12144-1_{1..316}	lnc-AC092031.1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092031.1-1:6	chr7	 96285769	 96286084	-	lnc-AC092031.1-1	lnc-AC092031.1-1:6	XLOC_006529	linc-SLC25A13	NA	NA	NA	inter
CUST_17026_PI429285431	0.8919147	A	1.0914412	A	0.870836329401545	0	lncRNA	18737-1_{1..388}	lnc-PTPRU-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPRU-2:1	chr1	 30161236	 30161623	+	lnc-PTPRU-2	lnc-PTPRU-2:1	XLOC_000114	linc-ZCCHC17-9	NA	NA	NA	inter
CUST_16121_PI429285431	0.92287505	A	1.0211602	A	0.934142694473815	0	lncRNA	17827-1_{1..717}	lnc-MMAA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MMAA-1:1	chr4	146521548	146522264	+	lnc-MMAA-1	lnc-MMAA-1:1	XLOC_003719	linc-MMAA	NA	NA	NA	inter
LNCA_19_P00319990	2.7183647	A	2.0673974	A	1.57022064645954	0	lncRNA	ENST00000551938	XR_110299	XR_110299	NA	Hs.728856	LOC100506948	NA	ENST00000551938	THC2500438	NA	"PREDICTED: Homo sapiens hypothetical LOC100506948 (LOC100506948), miscRNA [XR_110299]"	chr15:25246780-25246839	hs|15q11.2	Agilent_HUMAN_G3V2	ENST00000551938	ENST00000551938	chr15	 25246780	 25246839	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37163_PI429285431	0.89399827	A	0.89035237	A	1.00253034122892	0	lncRNA	38280-1_{1..513}	n345599|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1148|NULL|-1.4311400|-0.3545060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345599|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1148|NULL|-1.4311400|-0.3545060	chr3	150193443	150193955	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11796_PI429285431	1.1317577	A	0.9045053	A	1.17060342103726	0	lncRNA	13377-1_{1..348}	lnc-HELZ-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HELZ-1:3	chr17	 65039356	 65039703	-	lnc-HELZ-1	lnc-HELZ-1:3	XLOC_012552	linc-APOH	CACNG4	NA	chr17:65029356-65029518	inter
CUST_6401_PI429285431	4.4041514	P	4.7890487	P	0.765833513396294	0	lncRNA	6337-1_{1..559}	"transcript_id ""ENST00000601293.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601293.1"" | genecode_v17"	chr19	 23583789	 23584347	-	ENSG00000269416.1	ENST00000601293.1	CTB-175P5.4	CTB-175P5.4-003	ZNF91	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30chr19:23573789-23578269"	NA	inter
CUST_40975_PI429285431	1.7869625	A	1.1611049	A	1.54312785440537	0	lncRNA	41646-1_{1..673}	n411079|NR_038903|lncRNA|Homosapiens||RefGeneNoncode|NR_038903||-1.0888000|-0.3829747	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n411079|NR_038903|lncRNA|Homosapiens||RefGeneNoncode|NR_038903||-1.0888000|-0.3829747	chr11	 82783107	 82783779	+	NA	NA	NA	NA	RAB30	NA	chr11:82773107-82782884	inter
CUST_43054_PI429285431	17.364397	P	17.388016	P	0.98376184047925	0	lncRNA	46764-1_{1..126}	ENST00000517146 ncrna:snRNA chromosome:GRCh37:4:73830895:73831020:1 gene:ENSG00000252955 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517146 ncrna:snRNA chromosome:GRCh37:4:73830895:73831020:1 gene:ENSG00000252955 gene_biotype:snRNA transcript_biotype:snRNA	chr4	 73830895	 73831020	+	ENSG00000252955	ENST00000517146	NA	NA	NA	NA	NA	inter
CUST_30286_PI429285431	5.9888735	P	6.0737395	P	0.942872107436428	0	lncRNA	32062-1_{1..353}	n335182|AY429538|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254626|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254626|2.0866700|-0.1022695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335182|AY429538|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254626|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254626|2.0866700|-0.1022695	chr5	141008741	141009093	-	NA	NA	NA	NA	RELL2	NA	chr5:141016517-141020631	inner
LNCA_21_P0007900	1.4471548	A	0.89503884	A	1.46623460450069	0	lncRNA	THC2665362	NA	NA	NA	NA	XLOC_010243	NA	NA	THC2665362	NA	"BROAD Institute lincRNA (XLOC_010243), lincRNA [TCONS_00021436]"	chr12:127150064-127150005	hs|12q24.32	Agilent_HUMAN_G3V2	THC2665362	THC2665362	chr12	127150005	127150064	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012533	4.2567163	P	3.8356686	P	1.33889952444296	0	lncRNA	ENST00000454410	NA	NA	NA	NA	XLOC_l2_010097	NA	ENST00000454410	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010097), lincRNA [TCONS_l2_00020068]"	chr3:6830680-6830621	hs|3p26.1	Agilent_HUMAN_G3V2	ENST00000454410	ENST00000454410	chr3	  6830621	  6830680	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29352_PI429285431	9.197608	P	9.261179	P	0.95689265752543	0	lncRNA	31104-1_{1..498}	n332608|AL049465|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000023827|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000023827|-0.7730170|-0.1728527	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332608|AL049465|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000023827|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000023827|-0.7730170|-0.1728527	chr17	 73702431	 73702928	+	NA	NA	NA	NA	SAP30BP	NA	chr17:73692431-73704139	inner
CUST_3441_PI429285431	4.7665854	P	4.8071136	P	0.972298903832861	0	lncRNA	3412-1_{1..791}	"transcript_id ""ENST00000397864.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000397864.2"" | genecode_v17"	chr9	 83484673	 83485463	-	ENSG00000226798.1	ENST00000397864.2	RP11-289F5.1	RP11-289F5.1-001	NA	NA	NA	inter
CUST_11220_PI429285431	3.0435855	P	3.0932984	P	0.966128571850571	0	lncRNA	12778-1_{1..331}	lnc-DYNLRB2-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DYNLRB2-3:3	chr16	 80195776	 80196106	+	lnc-DYNLRB2-3	lnc-DYNLRB2-3:3	XLOC_011799	linc-DYNLRB2-1	NA	NA	NA	inter
CUST_39464_PI429285431	3.063976	A	4.077869	P	0.495208162583709	0	lncRNA	40408-1_{1..2360}	n387017|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wjp.1||0.0457692|-0.2879735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387017|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wjp.1||0.0457692|-0.2879735	chr17	 43585421	 43587780	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0,hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0,hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0,hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0,hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-18.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0,hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.30"	NA	inter
CUST_34499_PI429285431	2.4286904	A	0.8891524	A	2.9070139608666	0	lncRNA	35966-1_{1..396}	n341377|AF107460|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3846|NULL|-1.0586700|-0.3417448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341377|AF107460|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3846|NULL|-1.0586700|-0.3417448	chr7	156934871	156935266	-	NA	NA	NA	NA	UBE3C	NA	chr7:156931655-156945247	inner
CUST_35288_PI429285431	3.108139	A	3.0290396	P	1.0563584047025	0	lncRNA	36691-1_{1..683}	n342308|M21302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4800|NULL|-0.7114920|-0.1271055	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342308|M21302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4800|NULL|-0.7114920|-0.1271055	chr1	153012200	153012882	-	NA	NA	NA	NA	SPRR2D	NA	chr1:153012201-153013594	inner
CUST_24324_PI429285431	7.9182158	P	8.097236	P	0.883302683767831	0	lncRNA	25877-1_{1..2380}	lnc-SULT1A3.1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SULT1A3.1-1:6	chr16	 30215129	 30217508	+	lnc-SULT1A3.1-1	lnc-SULT1A3.1-1:6	ENSG00000213599.5	SULT1A3	SULT1A3	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30chr16:30210549-30215650"	NA	inner
CUST_3991_PI429285431	4.6887107	P	5.263872	P	0.671211202667783	0	lncRNA	3952-1_{1..831}	"transcript_id ""ENST00000533311.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533311.1"" | genecode_v17"	chr11	 67385750	 67386580	-	ENSG00000255318.1	ENST00000533311.1	RP11-655M14.13	RP11-655M14.13-001	TBX10	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80chr11:67398774-67404775"	NA	inter
CUST_12220_PI429285431	0.9076276	A	0.914924	A	0.994955288426246	0	lncRNA	13824-1_{1..1662}	lnc-SERHL2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERHL2-2:2	chr22	 42846371	 42848032	+	lnc-SERHL2-2	lnc-SERHL2-2:2	XLOC_014257	linc-SERHL2-1	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90"	NA	inter
CUST_27254_PI429285431	4.5690117	P	4.995484	P	0.744078996025446	0	lncRNA	28805-1_{1..358}	n324398|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042189|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042189|-0.8239860|-0.3078979	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324398|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042189|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042189|-0.8239860|-0.3078979	chr6	129902185	129902542	-	NA	NA	NA	NA	ARHGAP18	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-15.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.49chr6:129898240-129919466"	NA	inner
LNCA_21_P0010687	2.494313	A	1.3401693	A	2.22552190379537	0	lncRNA	AK310350	NA	AK310350	NA	Hs.713521	LOC100288175	uncharacterized LOC100288175	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000018), lincRNA [TCONS_l2_00001952]"	chr1:995934-995993	hs|1p36.33	Agilent_HUMAN_G3V2	AK310350	AK310350	chr1	   995934	   995993	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51548_PI429285431	4.427175	P	4.155609	P	1.2071174047101	0	lncRNA	55114-1_{1..970}	hg19_lincRNAsTranscripts_TCONS_l2_00010573 range=chr17:14737941-14803874 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010573 range=chr17:14737941-14803874 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 14737941	 14738910	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014893	2.9648762	A	3.879536	P	0.530468945113573	0	lncRNA	XR_132875	XR_132875	XR_132875	NA	NA	LOC645561	carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2-like	NA	NA	NA	"PREDICTED: Homo sapiens carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2-like (LOC645561), miscRNA [XR_132875]"	chr7_gl000195_random:143212-143151	NA	Agilent_HUMAN_G3V2	XR_132875	XR_132875	chr7_gl000195_random	   143151	   143212	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20188_PI429285431	1.2553797	A	0.8900776	A	1.28815133985579	0	lncRNA	21831-1_{1..443}	lnc-CPPED1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPPED1-4:1	chr16	 13298662	 13299104	-	lnc-CPPED1-4	lnc-CPPED1-4:1	ENSG00000262116.1	AC009134.1	SHISA9	"hg19_refFlat_SHISA9:range=chr16:12995922-133292665'pad=0,hg19_refFlat_SHISA9:range=chr16:12995922-133292665'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10chr16:13288662-13308764"	NA	inner
CUST_27929_PI429285431	0.9049235	A	0.89510113	A	1.00683157756188	0	lncRNA	29530-1_{1..529}	n325173|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330617|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330617|-1.1348200|-0.5272633	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325173|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330617|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330617|-1.1348200|-0.5272633	chr2	113064843	113065371	+	NA	NA	NA	NA	ZC3H6	NA	chr2:113054843-113075987	inner
CUST_21351_PI429285431	5.3773804	P	5.5128937	P	0.910345881775986	0	lncRNA	22975-1_{1..535}	lnc-CCL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CCL1-3:1	chr17	 32263023	 32263557	-	lnc-CCL1-3	lnc-CCL1-3:1	ENSG00000265356.1	RP11-17M24.1	ACCN1	NA	chr17:32253023-32273225	inner
CUST_14610_PI429285431	0.90471435	A	0.89897454	A	1.00398645798764	0	lncRNA	16278-1_{1..646}	lnc-CBLB-7:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLB-7:18	chr3	106531617	106532262	-	lnc-CBLB-7	lnc-CBLB-7:18	XLOC_003202	linc-CBLB-4	NA	NA	NA	inter
CUST_11555_PI429285431	1.1622446	A	1.5837939	A	0.746622401128069	0	lncRNA	13129-1_{1..1012}	lnc-RP11-487E13.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-487E13.1.1-1:2	chr4	178147740	178148751	-	lnc-RP11-487E13.1.1-1	lnc-RP11-487E13.1.1-1:2	XLOC_004182	linc-VEGFC-2	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
CUST_26396_PI429285431	5.2317877	P	4.084459	P	2.21503377919232	0	lncRNA	27903-1_{1..1575}	lnc-SESN3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SESN3-2:2	chr11	 94706662	 94708236	-	lnc-SESN3-2	lnc-SESN3-2:2	ENSG00000150316.7	CWC15	KDM4D	NA	chr11:94706845-94716776	inner
LNCA_21_P0011701	4.600587	P	4.69287	P	0.93803717246868	0	lncRNA	TCONS_l2_00012612	NA	NA	NA	NA	XLOC_l2_006780	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006780), lincRNA [TCONS_l2_00012612]"	chr19:50473425-50473484	hs|19q13.33	Agilent_HUMAN_G3V2	TCONS_l2_00012612	TCONS_l2_00012612	chr19	 50473425	 50473484	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26649_PI429285431	6.5305047	P	6.493865	P	1.02572194859457	0	lncRNA	28149-1_{1..480}	lnc-LACTBL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LACTBL1-1:1	chr1	 23163162	 23163641	-	lnc-LACTBL1-1	lnc-LACTBL1-1:1	ENSG00000225952.1	RP11-69E9.1	EPHB2	NA	chr1:23153162-23173342	inner
CUST_38829_PI429285431	2.0855541	A	1.322702	A	1.69684184026267	0	lncRNA	39823-1_{1..3000}	n384625|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jka.1||-1.1494700|-0.4572311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384625|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jka.1||-1.1494700|-0.4572311	chr5	 36098657	 36101656	-	NA	NA	NA	NA	LMBRD2	NA	chr5:36103414-36112483	inter
CUST_14532_PI429285431	2.1900403	A	3.408888	P	0.429625729085055	0	lncRNA	16200-1_{1..1075}	lnc-FRG2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRG2-3:1	chr4	190599858	190600932	-	lnc-FRG2-3	lnc-FRG2-3:1	XLOC_004231	linc-TRIML2-6	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
CUST_11695_PI429285431	7.6000443	P	7.6355867	P	0.975664877888872	0	lncRNA	13273-1_{1..1186}	lnc-RNASEH2B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNASEH2B-3:2	chr13	 51107329	 51108514	+	lnc-RNASEH2B-3	lnc-RNASEH2B-3:2	XLOC_010390	linc-RNASEH2B-1	NA	NA	NA	inter
CUST_27730_PI429285431	3.7461495	P	3.7495155	P	0.997669586230484	0	lncRNA	29312-1_{1..321}	n324946|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000259162|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000259162|-1.1685700|-0.2331917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324946|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000259162|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000259162|-1.1685700|-0.2331917	chr20	 50731373	 50731693	+	NA	NA	NA	NA	ZFP64	NA	chr20:50721373-50750526	inner
CUST_22654_PI429285431	2.8972082	A	2.029672	A	1.82454432525035	0	lncRNA	24238-1_{1..574}	lnc-TRPV2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRPV2-1:1	chr17	 16373616	 16374189	+	lnc-TRPV2-1	lnc-TRPV2-1:1	ENSG00000175061.10	C17orf76-AS1	C17orf76	NA	chr17:16363616-16383767	inner
CUST_51257_PI429285431	3.819633	P	3.7287967	P	1.06498735434613	0	lncRNA	54865-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008956 range=chr15:28943751-28948787 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008956 range=chr15:28943751-28948787 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 28943751	 28946750	-	NA	NA	NA	NA	LOC653720	NA	chr15:28947100-28958787	inter
LNCA_21_P0005352	1.8181953	A	2.1437652	A	0.797983101150104	0	lncRNA	AK024457	NA	AK024457	NA	Hs.288853	LOC100288594	uncharacterized LOC100288594	NA	THC2492792	NA	"BROAD Institute lincRNA (XLOC_005968), lincRNA [TCONS_00013322]"	chr7:2487814-2487873	hs|7p22.3	Agilent_HUMAN_G3V2	AK024457	AK024457	chr7	  2487814	  2487873	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_961_PI429285431	2.7855926	A	1.5730125	A	2.31751728643654	0	lncRNA	950-1_{1..539}	"transcript_id ""ENST00000598512.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598512.1"" | genecode_v17"	chr2	 98081833	 98082371	-	ENSG00000230606.5	ENST00000598512.1	AC159540.1	AC159540.1-008	NA	NA	NA	inter
CUST_17752_PI429285431	5.7173896	P	6.1455793	P	0.743193763227551	0	lncRNA	19483-1_{1..1056}	lnc-SLC25A48-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A48-2:4	chr5	135160587	135161642	+	lnc-SLC25A48-2	lnc-SLC25A48-2:4	XLOC_004565	linc-SLC25A48-1	SLC25A48	NA	chr5:135170365-135170793	inter
CUST_3384_PI429285431	0.8894598	A	0.9191199	A	0.979651076905576	0	lncRNA	3358-1_{1..2913}	"transcript_id ""ENST00000425633.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000425633.1"" | genecode_v17"	chr9	 27245682	 27248594	-	ENSG00000231459.1	ENST00000425633.1	LINC00032	LINC00032-001	C9orf11	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr9:27284652-27292791"	NA	inter
CUST_7086_PI429285431	8.424086	P	8.466691	P	0.970900259209248	0	lncRNA	7021-1_{1..581}	"transcript_id ""ENST00000602938.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602938.1"" | genecode_v17"	chrX	 73164159	 73164739	+	ENSG00000225470.2	ENST00000602938.1	JPX	JPX-006	NA	NA	NA	inter
CUST_42690_PI429285431	0.9005579	A	0.90992385	A	0.993529045550569	0	lncRNA	45614-1_{1..71}	ENST00000517123 ncrna:snoRNA chromosome:GRCh37:6:78646918:78646988:1 gene:ENSG00000252932 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517123 ncrna:snoRNA chromosome:GRCh37:6:78646918:78646988:1 gene:ENSG00000252932 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	 78646918	 78646988	+	ENSG00000252932	ENST00000517123	NA	NA	NA	NA	NA	inter
CUST_36837_PI429285431	0.90197617	A	0.921113	A	0.986822947874109	0	lncRNA	38002-1_{1..1678}	n345310|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_859|NULL|-1.3674000|-0.3383335	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345310|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_859|NULL|-1.3674000|-0.3383335	chr15	 72628858	 72630535	-	NA	NA	NA	NA	HEXA	"hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20chr15:72635778-72644793"	NA	inter
CUST_1867_PI429285431	2.7951097	A	1.9005752	A	1.85900996026852	0	lncRNA	1857-1_{1..621}	"transcript_id ""ENST00000507782.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507782.1"" | genecode_v17"	chr4	121992584	121993204	+	ENSG00000250344.1	ENST00000507782.1	RP11-647P12.1	RP11-647P12.1-001	NDNF	NA	chr4:121982584-121993673	inner
CUST_20278_PI429285431	1.1810529	A	0.89898205	A	1.21593899584591	0	lncRNA	21921-1_{1..474}	lnc-PRPF18-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRPF18-5:1	chr10	 13798036	 13798509	+	lnc-PRPF18-5	lnc-PRPF18-5:1	ENSG00000234091.1	RP11-353M9.1	FRMD4A	NA	chr10:13788036-13808200	inner
CUST_22_PI429285431	5.3837376	P	5.9474626	P	0.676553064718451	0	lncRNA	21-1_{1..397}	"transcript_id ""ENST00000522471.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000522471.1"" | genecode_v17"	chr8	 37455153	 37455549	-	ENSG00000254290.1	ENST00000522471.1	RP11-150O12.3	RP11-150O12.3-002	NA	NA	NA	inter
CUST_11751_PI429285431	0.92021525	A	0.9124857	A	1.00537209401542	0	lncRNA	13331-1_{1..479}	lnc-C9orf156-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf156-2:2	chr9	100655088	100655566	-	lnc-C9orf156-2	lnc-C9orf156-2:2	XLOC_007800	linc-XPA-2	NA	NA	NA	inter
CUST_48574_PI429285431	0.8943473	A	0.9011489	A	0.995296585994304	0	lncRNA	52422-1_{1..1132}	hg19_lincRNAsTranscripts_TCONS_l2_00013442 range=chr2:3891937-3895579 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013442 range=chr2:3891937-3895579 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	  3891937	  3893068	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38917_PI429285431	6.0080404	P	6.0655856	P	0.960897732820772	0	lncRNA	39906-1_{1..2183}	n385002|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pxg.1||0.2734270|-0.3206421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385002|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pxg.1||0.2734270|-0.3206421	chr6	116999739	117001921	-	NA	NA	NA	NA	KPNA5	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30chr6:117002367-117011922"	NA	inter
CUST_19153_PI429285431	9.376893	P	8.93169	P	1.36150567895789	0	lncRNA	20827-1_{1..1965}	lnc-SRA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,"	>lnc-SRA1-1:1	NA	NA	     1964	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_625_PI429285431	0.9126117	A	1.3774402	A	0.724557203708478	0	lncRNA	617-1_{1..590}	"transcript_id ""ENST00000416685.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416685.1"" | genecode_v17"	chr2	   306059	   306648	-	ENSG00000235779.2	ENST00000416685.1	AC079779.5	AC079779.5-001	NA	NA	NA	inter
CUST_33765_PI429285431	0.90809387	A	1.0981381	A	0.87657884683763	0	lncRNA	35319-1_{1..3000}	n340545|AK128567|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3007|NULL|-0.3996160|-0.3660352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340545|AK128567|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3007|NULL|-0.3996160|-0.3660352	chr5	 88390860	 88393859	+	NA	NA	NA	NA	NA	"hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_24117_PI429285431	5.445726	P	5.163454	P	1.21610854185097	0	lncRNA	25667-1_{1..554}	lnc-ZNF574-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF574-1:2	chr19	 42640824	 42641377	+	lnc-ZNF574-1	lnc-ZNF574-1:2	ENSG00000254887.1	CTC-378H22.1	POU2F2	NA	chr19:42630824-42636625	inter
CUST_37564_PI429285431	7.0763273	P	7.4444	P	0.774816885557841	0	lncRNA	38666-1_{1..960}	n346040|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1590|NULL|-1.3109600|-0.1051183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346040|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1590|NULL|-1.3109600|-0.1051183	chr7	 44001283	 44002242	-	NA	NA	NA	NA	UBE2D4	NA	chr7:43991283-43995735	inter
CUST_4841_PI429285431	0.9179372	A	1.2970976	A	0.768884925635691	0	lncRNA	4784-1_{1..690}	"transcript_id ""ENST00000555946.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555946.1"" | genecode_v17"	chr14	 57347536	 57348225	-	ENSG00000258776.1	ENST00000555946.1	RP11-1085N6.5	RP11-1085N6.5-004	NA	NA	NA	inter
CUST_17404_PI429285431	0.9059932	A	0.9160238	A	0.993071431866964	0	lncRNA	19127-3_{6001..8467}	lnc-WRNIP1-2:24	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRNIP1-2:24	chr6	  2418721	  2421187	+	lnc-WRNIP1-2	lnc-WRNIP1-2:24	XLOC_005127	linc-WRNIP1-2	NA	NA	NA	inter
CUST_14211_PI429285431	1.8089541	A	1.2548792	A	1.46822685958383	0	lncRNA	15864-1_{1..1918}	lnc-FOLR3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOLR3-1:2	chr11	 71830751	 71832668	+	lnc-FOLR3-1	lnc-FOLR3-1:2	XLOC_009202	linc-FOLR3	FOLR3	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20chr11:71842328-71842451"	NA	inter
LNCA_19_P00316467	5.208427	P	6.6019783	P	0.380626707471338	0	lncRNA	ENST00000473756	XR_108458	XR_108458	NA	Hs.307772	XLOC_002736	0	ENST00000473756	THC2615048	NA	"PREDICTED: Homo sapiens hypothetical LOC100506377 (LOC100506377), miscRNA [XR_108458]"	chr3:98700099-98700158	hs|3q12.1	Agilent_HUMAN_G3V2	ENST00000473756	ENST00000473756	chr3	 98700099	 98700158	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014085	2.1297762	A	1.3556569	A	1.71014576609511	0	lncRNA	ENST00000455965	XR_108388	XR_108388	NA	NA	LOC100506299	NA	ENST00000455965	THC2651542	NA	"PREDICTED: Homo sapiens hypothetical LOC100506299 (LOC100506299), miscRNA [XR_108388]"	chr2:8811244-8811185	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000455965	ENST00000455965	chr2	  8811185	  8811244	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17675_PI429285431	1.4230882	A	1.8981016	A	0.719460107504992	0	lncRNA	19404-1_{1..2455}	lnc-HNF1B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-HNF1B-2:1	chr17	 36244311	 36246765	-	lnc-HNF1B-2	lnc-HNF1B-2:1	XLOC_012454	linc-HNF1B-2	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	inter
LNCA_21_P0003364	10.529349	P	10.267867	P	1.19870943960339	0	lncRNA	ENST00000508241	NA	NA	NA	NA	XLOC_003540	NA	ENST00000508241	THC2658373	NA	"BROAD Institute lincRNA (XLOC_003540), lincRNA [TCONS_00007531]"	chr4:55242828-55242887	hs|4q12	Agilent_HUMAN_G3V2	ENST00000508241	ENST00000508241	chr4	 55242828	 55242887	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001825	0.9092727	A	1.5427107	A	0.644638384392086	0	lncRNA	ENST00000429878	NA	NA	NA	NA	XLOC_001353	NA	ENST00000429878	THC2657735	NA	"BROAD Institute lincRNA (XLOC_001353), lincRNA [TCONS_00003579]"	chr2:12005977-12006036	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000429878	ENST00000429878	chr2	 12005977	 12006036	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8399_PI429285431	8.430552	P	8.522673	P	0.938142510429822	0	lncRNA	9977-1_{1..3000}	lnc-AUH-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AUH-3:1	chr9	 93835808	 93838807	-	lnc-AUH-3	lnc-AUH-3:1	ENSG00000249954	XLOC_007774	NA	NA	NA	inter
CUST_17268_PI429285431	0.9287503	A	1.317782	A	0.763641969469989	0	lncRNA	18986-1_{1..1812}	lnc-HERPUD2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HERPUD2-4:1	chr7	 36028583	 36030394	-	lnc-HERPUD2-4	lnc-HERPUD2-4:1	XLOC_006411	linc-HERPUD2-2	NA	NA	NA	inter
CUST_23165_PI429285431	0.9117649	A	1.0968437	A	0.879601030803943	0	lncRNA	24736-1_{1..577}	lnc-SPOP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPOP-1:1	chr17	 47655131	 47655707	-	lnc-SPOP-1	lnc-SPOP-1:1	ENSG00000250310.1	RP5-1029K10.4	NXPH3	NA	chr17:47653298-47661172	inner
CUST_19477_PI429285431	4.8234644	P	5.2215776	P	0.758850081540246	0	lncRNA	21134-1_{1..446}	lnc-ALDH3A2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALDH3A2-2:1	chr17	 19641669	 19642114	+	lnc-ALDH3A2-2	lnc-ALDH3A2-2:1	ENSG00000264785.1	RP11-311F12.2	ALDH3A1	"hg19_refFlat_ALDH3A1:range=chr17:19641534-196484425'pad=0,hg19_refFlat_ALDH3A1:range=chr17:19641534-196484425'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10chr17:19641297-19651746"	NA	inner
CUST_35377_PI429285431	0.8975894	A	0.9018147	A	0.99707552983638	0	lncRNA	36785-1_{1..1680}	n342424|BC036927|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4917|NULL|-0.9052080|-0.2068612	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342424|BC036927|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4917|NULL|-0.9052080|-0.2068612	chr2	 87829754	 87831433	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39195_PI429285431	7.6313105	P	7.709098	P	0.947509622591429	0	lncRNA	40170-1_{1..982}	n385950|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009why.2||-0.7820310|-0.1973143	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385950|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009why.2||-0.7820310|-0.1973143	chr1	143719238	143720219	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM91A1:range=chr8:124780943-1248249445'pad=0,hg19_refFlat_FAM91A1:range=chr8:124780943-1248249445'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50"	NA	inter
LNCA_19_P00808473	0.9038396	A	2.1548133	A	0.420164535550028	0	lncRNA	XR_132575	XR_132575	XR_132575	NA	NA	LOC100652997	NA	NA	THC2658719	NA	"PREDICTED: Homo sapiens hypothetical LOC100652997 (LOC100652997), miscRNA [XR_132575]"	chr10:6816703-6816644	hs|10p14	Agilent_HUMAN_G3V2	XR_132575	XR_132575	chr10	  6816644	  6816703	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36853_PI429285431	1.1827354	A	1.2512656	A	0.953609028496618	0	lncRNA	38014-5_{12001..14805}	n345322|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_871|NULL|-1.4390300|-0.1893230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345322|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_871|NULL|-1.4390300|-0.1893230	chr16	 85210652	 85213456	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_17766_PI429285431	1.9158387	A	1.6296588	A	1.21940714122526	0	lncRNA	19498-1_{1..1541}	lnc-SMOC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SMOC1-1:1	chr14	 70281982	 70283522	+	lnc-SMOC1-1	lnc-SMOC1-1:1	XLOC_010860	linc-SMOC1	NA	NA	NA	inter
CUST_21857_PI429285431	5.7796807	P	5.8103547	P	0.978962837703941	0	lncRNA	23467-1_{1..590}	lnc-TMEM68-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM68-1:1	chr8	 56433494	 56434083	-	lnc-TMEM68-1	lnc-TMEM68-1:1	ENSG00000254357.1	RP11-628E19.2	XKR4	NA	chr8:56423494-56438714	inner
CUST_1645_PI429285431	8.958038	P	8.975157	P	0.9882041366005	0	lncRNA	1630-1_{1..431}	"transcript_id ""ENST00000424730.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424730.1"" | genecode_v17"	chr3	195435005	195435435	+	ENSG00000242086.3	ENST00000424730.1	AC069513.3	AC069513.3-008	MUC20	NA	chr3:195447753-195448552	inter
CUST_37164_PI429285431	1.1174865	A	0.9082817	A	1.15605080388234	0	lncRNA	38281-1_{1..289}	n345600|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1149|NULL|-1.2977300|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345600|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1149|NULL|-1.2977300|-1.0000000	chr3	152909366	152909654	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43817_PI429285431	8.68846	P	9.055932	P	0.775139565958267	0	lncRNA	48541-1_{1..2482}	"gi|388596713|ref|NR_049785.1| Homo sapiens sorting nexin 17 (SNX17), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388596713|ref|NR_049785.1| Homo sapiens sorting nexin 17 (SNX17), transcript variant 8, non-coding RNA"	Chr2	 27593363	 27595844	+	9784	NR_049785.1	NA	NA	NA	NA	NA	inter
CUST_30302_PI429285431	2.0196414	A	1.322047	A	1.62179829387717	0	lncRNA	32078-1_{1..340}	n335203|AY495951|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254945|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254945|0.3792940|-0.1658179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335203|AY495951|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254945|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254945|0.3792940|-0.1658179	chr7	 31126585	 31126924	+	NA	NA	NA	NA	ADCYAP1R1	NA	chr7:31116585-31151093	inner
CUST_45591_PI429285431	10.82112	P	10.482384	P	1.26464810214053	0	lncRNA	49980-2_{3001..3297}	"gi|365733573|ref|NR_045675.1| Homo sapiens Rho GTPase activating protein 22 (ARHGAP22), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|365733573|ref|NR_045675.1| Homo sapiens Rho GTPase activating protein 22 (ARHGAP22), transcript variant 6, non-coding RNA"	Chr10	 49657068	 49657364	-	58504	NR_045675.1	NA	NA	NA	NA	NA	inter
CUST_47000_PI429285431	10.615477	P	10.18532	P	1.3473801963348	0	lncRNA	51099-1_{1..1434}	"gi|215422363|ref|NR_024546.1| Homo sapiens thioredoxin-like 1 (TXNL1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|215422363|ref|NR_024546.1| Homo sapiens thioredoxin-like 1 (TXNL1), transcript variant 2, non-coding RNA"	Chr18	 54270053	 54271486	-	9352	NR_024546.1	NA	NA	NA	NA	NA	inter
CUST_37690_PI429285431	0.8880079	A	0.8844162	A	1.00249267829789	0	lncRNA	38782-1_{1..309}	n346180|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1730|NULL|-1.3448300|-0.2856850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346180|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1730|NULL|-1.3448300|-0.2856850	chr11	 28860961	 28861269	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18459_PI429285431	6.5391474	P	6.7975287	P	0.836025411687175	0	lncRNA	20182-1_{1..575}	lnc-RP11-785H20.1.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-785H20.1.1-2:3	chr8	122654824	122655398	+	lnc-RP11-785H20.1.1-2	lnc-RP11-785H20.1.1-2:3	ENSG00000248690	AC104233.1	HAS2	NA	chr8:122644824-122653630	inter
CUST_51414_PI429285431	8.673485	P	8.622834	P	1.0357321809727	0	lncRNA	54991-1_{1..247}	hg19_lincRNAsTranscripts_TCONS_l2_00009929 range=chr16:1336272-1336612 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009929 range=chr16:1336272-1336612 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	  1336272	  1336518	-	NA	NA	NA	NA	UBE2I	NA	chr16:1326272-1346612	inter
CUST_38498_PI429285431	2.118694	A	1.8335829	A	1.21850409541977	0	lncRNA	39512-1_{1..1953}	n383034|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fqd.1||2.9591000|-0.1517892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383034|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fqd.1||2.9591000|-0.1517892	chr16	 90065013	 90066965	+	NA	NA	NA	NA	DBNDD1	NA	chr16:90071279-90077195	inter
CUST_27147_PI429285431	6.0463915	P	6.1411686	P	0.936416915018995	0	lncRNA	28683-1_{1..433}	n324263|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324911|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324911|-1.1837300|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324263|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324911|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324911|-1.1837300|-1.0000000	chr7	  1273514	  1273946	+	NA	NA	NA	NA	UNCX	NA	chr7:1272654-1276613	inner
CUST_39221_PI429285431	2.7859542	A	0.90896326	A	3.67308158249681	0	lncRNA	40194-1_{1..2130}	n386038|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zgr.1||0.7614870|-0.3305975	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386038|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zgr.1||0.7614870|-0.3305975	chr12	  9800697	  9802826	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21773_PI429285431	1.7125399	A	2.7567673	A	0.484904517687608	0	lncRNA	23383-1_{1..455}	lnc-AC011294.3.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC011294.3.1-3:1	chr7	 47089040	 47089494	-	lnc-AC011294.3.1-3	lnc-AC011294.3.1-3:1	ENSG00000232072.1	AC004901.1	NA	NA	NA	inter
CUST_11497_PI429285431	3.0900877	P	3.557201	P	0.723410628681112	0	lncRNA	13066-1_{1..943}	lnc-GALNTL4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-GALNTL4-1:1	chr11	 11266303	 11267245	-	lnc-GALNTL4-1	lnc-GALNTL4-1:1	XLOC_009374	linc-ZBED5-3	NA	NA	NA	inter
CUST_16673_PI429285431	0.9173536	A	0.9184369	A	0.999249395503899	0	lncRNA	18377-1_{1..2769}	lnc-PAPOLA-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAPOLA-1:4	chr14	 97059827	 97062595	+	lnc-PAPOLA-1	lnc-PAPOLA-1:4	XLOC_010920	linc-VRK1-2	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10"	NA	inter
CUST_48132_PI429285431	15.016701	P	13.766713	P	2.37839444699431	0	lncRNA	52000-1_{1..237}	"gi|310110161|ref|XR_111163.1| PREDICTED: Homo sapiens uncharacterized LOC100508408 (LOC100508408), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310110161|ref|XR_111163.1| PREDICTED: Homo sapiens uncharacterized LOC100508408 (LOC100508408), misc_RNA"	NA	NA	NA	NA	NA	XR_111163.1	NA	NA	NA	NA	NA	Unknown
CUST_49015_PI429285431	3.3077102	P	3.683726	P	0.770562669321398	0	lncRNA	52843-1_{1..735}	hg19_lincRNAsTranscripts_TCONS_l2_00020445 range=chr4:22990820-23125058 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020445 range=chr4:22990820-23125058 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 22990820	 22991554	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38659_PI429285431	1.4941568	A	2.427584	A	0.523612992252401	0	lncRNA	39660-1_{1..1743}	n383921|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xmm.1||-1.1301600|-0.2129956	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383921|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xmm.1||-1.1301600|-0.2129956	chr20	 43289247	 43290989	-	NA	NA	NA	NA	ADA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr20:43279247-43280376"	NA	inner
CUST_19553_PI429285431	0.90264595	A	1.1516829	A	0.841457930766991	0	lncRNA	21209-1_{1..1594}	lnc-GSX2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-GSX2-2:1	chr4	 54602090	 54603683	+	lnc-GSX2-2	lnc-GSX2-2:1	ENSG00000249341.1	RP11-317M11.1	NA	NA	NA	inter
LNCA_21_P0006921	0.90854806	A	0.9003637	A	1.00568908780226	0	lncRNA	TCONS_00018350	NA	NA	NA	NA	XLOC_008633	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008633), lincRNA [TCONS_00018350]"	chr10:119512663-119512722	hs|10q26.11	Agilent_HUMAN_G3V2	TCONS_00018350	TCONS_00018350	chr10	119512663	119512722	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11847_PI429285431	11.610255	P	11.261864	P	1.27313993560526	0	lncRNA	13425-1_{1..820}	lnc-TUBGCP3-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TUBGCP3-6:1	chr13	112849131	112849950	-	lnc-TUBGCP3-6	lnc-TUBGCP3-6:1	XLOC_010730	linc-ANKRD10-8	NA	NA	NA	inter
CUST_40599_PI429285431	7.5816755	P	7.5985103	P	0.988398824508827	0	lncRNA	41345-1_{1..1458}	n410071|NR_036510|lncRNA|Homosapiens||RefGeneNoncode|NR_036510||5.6063300|-0.1185565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410071|NR_036510|lncRNA|Homosapiens||RefGeneNoncode|NR_036510||5.6063300|-0.1185565	chr1	 45477804	 45479261	+	NA	NA	NA	NA	ZSWIM5	NA	chr1:45482074-45491341	inter
CUST_402_PI429285431	4.2463117	P	4.449813	P	0.86844037167574	0	lncRNA	394-1_{1..356}	"transcript_id ""ENST00000411775.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411775.1"" | genecode_v17"	chr1	143361977	143362332	+	ENSG00000242569.2	ENST00000411775.1	RP11-435B5.3	RP11-435B5.3-008	NA	NA	NA	inter
LNCA_21_P0010392	2.4611862	A	3.0788448	P	0.651727781588978	0	lncRNA	TCONS_00029515	NA	NA	NA	NA	XLOC_014158	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014158), lincRNA [TCONS_00029515]"	chr22:21864507-21864566	hs|22q11.21	Agilent_HUMAN_G3V2	TCONS_00029515	TCONS_00029515	chr22	 21864507	 21864566	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19048_PI429285431	1.1983901	A	1.9529452	A	0.592729143802888	0	lncRNA	20738-1_{1..2984}	lnc-SART3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SART3-1:1	chr12	108886227	108889210	-	lnc-SART3-1	lnc-SART3-1:1	ENSG00000247213	RP11-13G14.4	NA	NA	NA	inter
CUST_10156_PI429285431	6.6812425	P	7.0430226	P	0.778203783721869	0	lncRNA	11680-1_{1..233}	lnc-LDLRAP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LDLRAP1-1:2	chr1	 25916660	 25916892	+	lnc-LDLRAP1-1	lnc-LDLRAP1-1:2	XLOC_000101	linc-MAN1C1	NA	NA	NA	inter
CUST_577_PI429285431	3.7661839	P	4.0983214	P	0.794358687959011	0	lncRNA	569-1_{1..807}	"transcript_id ""ENST00000440104.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440104.1"" | genecode_v17"	chr1	221681901	221682707	+	ENSG00000232436.1	ENST00000440104.1	RP11-103C3.1	RP11-103C3.1-001	NA	NA	NA	inter
LNCA_21_P0006082	5.433103	P	5.732971	P	0.812326717136703	0	lncRNA	ENST00000448475	NA	NA	NA	NA	XLOC_007749	NA	ENST00000448475	THC2670719	NA	"BROAD Institute lincRNA (XLOC_007749), lincRNA [TCONS_00015838]"	chr9:82489686-82489627	hs|9q21.31	Agilent_HUMAN_G3V2	ENST00000448475	ENST00000448475	chr9	 82489627	 82489686	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20700_PI429285431	2.2638142	A	2.511286	A	0.842371306427618	0	lncRNA	22336-1_{1..341}	lnc-RP11-33N16.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-33N16.1.1-1:1	chr14	 89875621	 89875961	+	lnc-RP11-33N16.1.1-1	lnc-RP11-33N16.1.1-1:1	ENSG00000258380.1	RP11-33N16.2	FOXN3	NA	chr14:89865621-89885813	inner
CUST_45133_PI429285431	10.739684	P	10.546237	P	1.14349257660172	0	lncRNA	49613-1_{1..1137}	"gi|349732230|ref|NR_045217.1| Homo sapiens uncharacterized LOC100652791 (LOC100652791), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|349732230|ref|NR_045217.1| Homo sapiens uncharacterized LOC100652791 (LOC100652791), non-coding RNA"	Chr8	  6693076	  6694212	+	100652791	NR_045217.1	NA	NA	NA	NA	NA	inter
CUST_42061_PI429285431	4.078639	P	4.7443237	P	0.630389451914937	0	lncRNA	43970-1_{1..84}	ENST00000410956 ncrna:miRNA chromosome:GRCh37:3:53916213:53916296:-1 gene:ENSG00000222888 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410956 ncrna:miRNA chromosome:GRCh37:3:53916213:53916296:-1 gene:ENSG00000222888 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 53916213	 53916296	-	ENSG00000222888	ENST00000410956	NA	NA	SELK	NA	chr3:53919226-53925989	inner
CUST_7861_PI429285431	0.89977455	A	0.89643186	A	1.00231966241249	0	lncRNA	9483-1_{1..2919}	lnc-HPCAL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HPCAL1-2:1	chr2	 10703978	 10706896	+	lnc-HPCAL1-2	lnc-HPCAL1-2:1	ENSG00000246332	XLOC_001343	NOL10	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-57.60;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60chr2:10710894-10716471"	NA	inter
CUST_26264_PI429285431	0.90647495	A	1.0230709	A	0.922361403920434	0	lncRNA	27771-1_{1..432}	lnc-UTS2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UTS2-3:1	chr1	  7449719	  7450150	-	lnc-UTS2-3	lnc-UTS2-3:1	ENSG00000237728.1	RP3-453P22.2	CAMTA1	NA	chr1:7439719-7459814	inner
CUST_35568_PI429285431	0.90320206	A	0.91281164	A	0.993361281028132	0	lncRNA	36982-1_{1..1748}	n342698|BC042887|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5200|NULL|1.2380200|-0.1709395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342698|BC042887|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5200|NULL|1.2380200|-0.1709395	chr5	140227821	140229568	-	NA	NA	NA	NA	PCDHA4	"hg19_refFlat_PCDHA9:range=chr5:140228081-1402306095'pad=0,hg19_refFlat_PCDHA9:range=chr5:140228081-1402306095'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.60;hg19_refFlat_PCDHA9:range=chr5:140228081-1403895225'pad=0,hg19_refFlat_PCDHA9:range=chr5:140228081-1403895225'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.60;hg19_refFlat_PCDHA7:range=chr5:140213969-1402163385'pad=0,hg19_refFlat_PCDHA7:range=chr5:140213969-1402163385'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.60;hg19_refFlat_PCDHA7:range=chr5:140213969-1403895225'pad=0,hg19_refFlat_PCDHA7:range=chr5:140213969-1403895225'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.60chr5:140217821-140239558"	NA	inner
CUST_26047_PI429285431	0.8911087	A	1.296451	A	0.75505712344233	0	lncRNA	27562-1_{1..569}	lnc-STC1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STC1-2:4	chr8	 24244674	 24245242	-	lnc-STC1-2	lnc-STC1-2:4	ENSG00000253535.1	RP11-624C23.1	ADAMDEC1	NA	chr8:24241798-24254837	inner
CUST_38602_PI429285431	1.7046001	A	2.3482342	A	0.640098529760442	0	lncRNA	39609-2_{3001..3607}	n383703|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tfs.3||3.5612600|-0.1913834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n383703|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tfs.3||3.5612600|-0.1913834	chr2	111135686	111136292	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZBTB45:range=chr19:59025421-590290405'pad=0,hg19_refFlat_ZBTB45:range=chr19:59025421-590290405'pad=0 3'pad=0 strand=- repeatMasking=none,-101.60"	NA	inter
CUST_18828_PI429285431	0.8933573	A	1.069222	A	0.885236780682675	0	lncRNA	20521-1_{1..214}	lnc-PRH2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PRH2-1:2	chr12	 10929917	 10930130	+	lnc-PRH2-1	lnc-PRH2-1:2	ENSG00000256888	RP13-81N3.2	NA	NA	NA	inter
CUST_33487_PI429285431	0.9340955	A	0.95748955	A	0.983915243986821	0	lncRNA	35059-1_{1..1591}	n340226|BC031238|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2687|NULL|-1.0605100|-0.3707077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340226|BC031238|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2687|NULL|-1.0605100|-0.3707077	chr4	138114909	138116499	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_445_PI429285431	1.3553991	A	0.89601755	A	1.37495228154272	0	lncRNA	437-1_{1..551}	"transcript_id ""ENST00000445201.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445201.1"" | genecode_v17"	chr1	147767899	147768449	-	ENSG00000244252.1	ENST00000445201.1	RP11-495P10.7	RP11-495P10.7-001	NA	NA	NA	inter
CUST_42403_PI429285431	2.016037	A	2.4234018	A	0.753999357889964	0	lncRNA	45099-1_{1..136}	ENST00000391119 ncrna:snoRNA chromosome:GRCh37:9:89875365:89875500:1 gene:ENSG00000212421 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391119 ncrna:snoRNA chromosome:GRCh37:9:89875365:89875500:1 gene:ENSG00000212421 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	 89875365	 89875500	+	ENSG00000212421	ENST00000391119	NA	NA	NA	NA	NA	inter
CUST_9672_PI429285431	0.9090211	A	0.91146445	A	0.99830783216955	0	lncRNA	11189-1_{1..243}	lnc-GPM6A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPM6A-2:1	chr4	176372381	176372623	-	lnc-GPM6A-2	lnc-GPM6A-2:1	XLOC_004177	linc-GLRA3-2	NA	"hg19_refFlat_HHLA3:range=chr1:70820635-708322015'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708322015'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10"	NA	inter
CUST_22555_PI429285431	1.4819071	A	1.0582975	A	1.34127921936281	0	lncRNA	24142-1_{1..245}	lnc-NGFR-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NGFR-2:1	chr17	 47457342	 47457586	+	lnc-NGFR-2	lnc-NGFR-2:1	ENSG00000250948.1	RP11-1079K10.2	NA	NA	NA	inter
CUST_37662_PI429285431	0.90772617	A	0.91111934	A	0.997650797486748	0	lncRNA	38755-1_{1..630}	n346145|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1695|NULL|-1.2682100|-0.3416905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346145|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1695|NULL|-1.2682100|-0.3416905	chr21	 28934418	 28935047	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8182_PI429285431	4.0272207	P	4.0887427	P	0.958252658073299	0	lncRNA	9782-1_{1..3000}	lnc-DUSP6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-DUSP6-2:2	chr12	 89413330	 89416329	-	lnc-DUSP6-2	lnc-DUSP6-2:2	ENSG00000246363	ENST00000500381	NA	NA	NA	inter
CUST_7992_PI429285431	1.4489799	A	0.91434646	A	1.44857405405352	0	lncRNA	9603-1_{1..632}	lnc-PHOX2B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHOX2B-2:1	chr4	 41884497	 41885128	-	lnc-PHOX2B-2	lnc-PHOX2B-2:1	ENSG00000245870	XLOC_003937	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20"	NA	inter
CUST_41009_PI429285431	5.617743	P	5.8152027	P	0.87208478060987	0	lncRNA	41670-1_{1..2819}	n411590|NR_040059|lncRNA|Homosapiens||RefGeneNoncode|NR_040059||-0.1850480|-0.3333910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411590|NR_040059|lncRNA|Homosapiens||RefGeneNoncode|NR_040059||-0.1850480|-0.3333910	chr15	 40331511	 40334329	+	NA	NA	NA	NA	EIF2AK4	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.20;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.44;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.14;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60chr15:40321511-40327797"	NA	inter
CUST_37886_PI429285431	1.0432613	A	0.9160736	A	1.09216263093	0	lncRNA	38977-1_{1..1149}	n346422|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1972|NULL|-1.2978200|-0.4424664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346422|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1972|NULL|-1.2978200|-0.4424664	chr10	 89103092	 89104240	+	NA	NA	NA	NA	FAM22D	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90chr10:89117477-89124443"	NA	inter
CUST_52217_PI429285431	1.2235891	A	1.0344719	A	1.14006588429241	0	lncRNA	55731-2_{3001..3597}	hg19_lincRNAsTranscripts_TCONS_00030000 range=chr6_mann_hap4:4301449-4305045 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00030000 range=chr6_mann_hap4:4301449-4305045 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6_mann_hap4	  4304449	  4305045	+	NA	NA	NA	NA	NA	"hg19_refFlat_PPP1R2:range=chr3:195243694-1952698485'pad=0,hg19_refFlat_PPP1R2:range=chr3:195243694-1952698485'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90"	NA	Unknown
CUST_30657_PI429285431	9.217415	P	9.132932	P	1.06030770449185	0	lncRNA	32439-1_{1..226}	n336091|X86816|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324260|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324260|-1.0776900|-0.4349387	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336091|X86816|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324260|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324260|-1.0776900|-0.4349387	chr6	151977826	151978051	+	NA	NA	NA	NA	ESR1	NA	chr6:152011631-152139002	inner
CUST_20326_PI429285431	1.5405723	A	1.1894543	A	1.27554871628563	0	lncRNA	21969-1_{1..268}	lnc-ZBTB25-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZBTB25-4:1	chr14	 65063180	 65063447	-	lnc-ZBTB25-4	lnc-ZBTB25-4:1	ENSG00000259076.1	RP11-973N13.3	C14orf50	"hg19_refFlat_PPP1R36:range=chr14:65016716-650560565'pad=0,hg19_refFlat_PPP1R36:range=chr14:65016716-650560565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80chr14:65053180-65056096"	NA	inter
CUST_51652_PI429285431	3.2208185	P	2.2205467	A	2.00037683030316	0	lncRNA	55221-1_{1..880}	hg19_lincRNAsTranscripts_TCONS_l2_00011393 range=chr17:60363989-60374374 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011393 range=chr17:60363989-60374374 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 60363989	 60364868	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19562_PI429285431	1.0693605	A	0.90116954	A	1.12364862312486	0	lncRNA	21218-1_{1..501}	lnc-CIT-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CIT-3:1	chr12	119696754	119697254	-	lnc-CIT-3	lnc-CIT-3:1	ENSG00000256311.1	RP11-64B16.5	NA	NA	NA	inter
CUST_8586_PI429285431	4.153359	P	2.111281	A	4.11838299007045	0	lncRNA	10142-1_{1..2952}	lnc-RPL30-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPL30-1:1	chr8	 98741404	 98744355	-	lnc-RPL30-1	lnc-RPL30-1:1	ENSG00000245613	ENST00000500619	MTDH	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60chr8:98731404-98742488"	NA	inner
CUST_11309_PI429285431	0.91090757	A	0.91729766	A	0.99558052189548	0	lncRNA	12872-2_{3001..3235}	lnc-AC114947.1.1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC114947.1.1-2:5	chr5	 43102122	 43102356	+	lnc-AC114947.1.1-2	lnc-AC114947.1.1-2:5	XLOC_004366	linc-ZNF131-1	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-58.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80"	NA	inter
CUST_46114_PI429285431	1.3820488	A	1.5723437	A	0.876426553438773	0	lncRNA	50375-1_{1..2568}	"gi|224451005|ref|NR_027035.1| Homo sapiens uncharacterized LOC144486 (LOC144486), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224451005|ref|NR_027035.1| Homo sapiens uncharacterized LOC144486 (LOC144486), non-coding RNA"	Chr12	 94853779	 94856346	+	144486	NR_027035.1	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10"	NA	inter
CUST_11913_PI429285431	1.1447444	A	2.041353	A	0.537147943102848	0	lncRNA	13494-1_{1..390}	lnc-EMX2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EMX2-2:4	chr10	119512547	119512936	+	lnc-EMX2-2	lnc-EMX2-2:4	XLOC_008633	linc-NANOS1-5	NA	NA	NA	inter
LNCA_21_P0014296	0.91857576	A	0.92393196	A	0.996294248379503	0	lncRNA	XR_109204	XR_109204	XR_109204	NA	Hs.703789	LOC100506580	uncharacterized LOC100506580	NA	THC2518219	NA	"PREDICTED: Homo sapiens hypothetical LOC100506580 (LOC100506580), miscRNA [XR_109204]"	chr15:63124646-63124587	hs|15q22.2	Agilent_HUMAN_G3V2	XR_109204	XR_109204	chr15	 63124587	 63124646	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40626_PI429285431	0.9122228	A	0.9100638	A	1.00149762508487	0	lncRNA	41367-1_{1..2305}	n410118|NR_036551|lncRNA|Homosapiens||RefGeneNoncode|NR_036551||-0.0333229|-0.2063350	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n410118|NR_036551|lncRNA|Homosapiens||RefGeneNoncode|NR_036551||-0.0333229|-0.2063350	chr17	 37213271	 37215575	+	NA	NA	NA	NA	PLXDC1	"hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_C11orf44:range=chr11:130542874-1305840925'pad=0,hg19_refFlat_C11orf44:range=chr11:130542874-1305840925'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20chr17:37219556-37247704"	NA	inner
CUST_19310_PI429285431	4.719699	P	4.892658	P	0.887021513088852	0	lncRNA	20976-1_{1..816}	lnc-NDUFS8-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFS8-1:12	chr11	 67788954	 67789769	+	lnc-NDUFS8-1	lnc-NDUFS8-1:12	ENSG00000006534.11	ALDH3B1	ALDH3B1	NA	chr11:67778954-67796743	inner
CUST_45825_PI429285431	9.776197	P	8.933356	P	1.7935786374088	0	lncRNA	50159-1_{1..2390}	"gi|388240774|ref|NR_049751.1| Homo sapiens reticulon 3 (RTN3), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388240774|ref|NR_049751.1| Homo sapiens reticulon 3 (RTN3), transcript variant 9, non-coding RNA"	Chr11	 63448922	 63451311	+	10313	NR_049751.1	NA	NA	NA	NA	NA	inter
CUST_11898_PI429285431	2.1205611	A	0.9253133	A	2.28984159489911	0	lncRNA	13480-1_{1..425}	lnc-LEPROTL1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LEPROTL1-3:2	chr8	 29735082	 29735506	+	lnc-LEPROTL1-3	lnc-LEPROTL1-3:2	XLOC_006757	linc-LEPROTL1-2	NA	NA	NA	inter
LNCA_21_P0006798	0.9177049	A	0.9191119	A	0.999025217326555	0	lncRNA	ENST00000415509	NA	NA	NA	NA	XLOC_008977	NA	ENST00000415509	NA	NA	"BROAD Institute lincRNA (XLOC_008977), lincRNA [TCONS_00018062]"	chr10:125185309-125185250	hs|10q26.13	Agilent_HUMAN_G3V2	ENST00000415509	ENST00000415509	chr10	125185250	125185309	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1766_PI429285431	0.91365814	A	0.9178568	A	0.997093941445628	0	lncRNA	1752-1_{1..624}	"transcript_id ""ENST00000512628.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512628.1"" | genecode_v17"	chr4	 55306669	 55307292	-	ENSG00000251264.1	ENST00000512628.1	RP11-545H22.1	RP11-545H22.1-001	NA	NA	NA	inter
CUST_17455_PI429285431	0.896744	A	1.0062534	A	0.926903209160945	0	lncRNA	19179-1_{1..568}	lnc-PDGFA-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PDGFA-2:1	chr7	   390629	   391196	-	lnc-PDGFA-2	lnc-PDGFA-2:1	XLOC_006329	linc-VIPR2-5	NA	NA	NA	inter
LNCA_21_P0001746	0.91522217	A	0.91450477	A	1.00049738744347	0	lncRNA	TCONS_00002497	NA	NA	NA	NA	XLOC_001053	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001053), lincRNA [TCONS_00002497]"	chr1:158097159-158096917	hs|1q23.1	Agilent_HUMAN_G3V2	TCONS_00002497	TCONS_00002497	chr1	158096917	158097159	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16551_PI429285431	2.9592097	A	3.262702	A	0.810288572783343	0	lncRNA	18252-1_{1..1855}	lnc-PTPRN2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPRN2-1:2	chr7	157232549	157234403	-	lnc-PTPRN2-1	lnc-PTPRN2-1:2	XLOC_006677	linc-MNX1-1	NA	NA	NA	inter
CUST_40010_PI429285431	5.1859236	P	5.287678	P	0.931899059453336	0	lncRNA	40871-2_{3001..4177}	n407158|NR_026572|lncRNA|Homosapiens||RefGeneNoncode|NR_026572||10.7316000|-0.0758398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407158|NR_026572|lncRNA|Homosapiens||RefGeneNoncode|NR_026572||10.7316000|-0.0758398	chr11	 72290184	 72291360	-	NA	NA	NA	NA	PDE2A	NA	chr11:72287185-72363487	inner
CUST_3673_PI429285431	1.2324853	A	0.89374745	A	1.26464972382801	0	lncRNA	3641-1_{1..408}	"transcript_id ""ENST00000419406.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419406.1"" | genecode_v17"	chr10	 44273010	 44273417	-	ENSG00000234973.1	ENST00000419406.1	RP11-272J7.4	RP11-272J7.4-001	NA	NA	NA	inter
CUST_189_PI429201921	1.075619	A	0.9173618	A	1.11593825122336	0	lncRNA	154-2_{3001..4934}	TC09001974.hg.1	TCONS_00015685-XLOC_007378 // Rinn lincRNAs // linc-ANKRD20A1-1 chr9:+:67914828-67919763 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:+:67914828-67919763	NA	Affy_HUMAN_HTA2.0	TCONS_00015685-XLOC_007378	linc-ANKRD20A1-1	chr9	 67914828	 67919763	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23095_PI429285431	1.6203057	A	2.7407522	A	0.459951452807591	0	lncRNA	24667-1_{1..780}	lnc-RP11-404L6.2.1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-404L6.2.1-1:6	chr5	 67095538	 67096317	+	lnc-RP11-404L6.2.1-1	lnc-RP11-404L6.2.1-1:6	ENSG00000249364.1	RP11-434D9.1	NA	NA	NA	inter
CUST_25389_PI429285431	1.0364434	A	0.8923506	A	1.1050355628859	0	lncRNA	26920-1_{1..256}	lnc-DDHD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DDHD2-1:1	chr8	 38133979	 38134234	+	lnc-DDHD2-1	lnc-DDHD2-1:1	ENSG00000255487.1	RP11-513D5.5	WHSC1L1	"hg19_refFlat_WHSC1L1:range=chr8:38133159-382056895'pad=0,hg19_refFlat_WHSC1L1:range=chr8:38133159-382056895'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80chr8:38132560-38144198"	NA	inner
CUST_45861_PI429285431	0.9089459	A	1.1724455	A	0.833064669963382	0	lncRNA	50190-1_{1..809}	"gi|397139413|ref|XR_159127.1| PREDICTED: Homo sapiens uncharacterized LOC100506113, transcript variant 4 (LOC100506113), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139413|ref|XR_159127.1| PREDICTED: Homo sapiens uncharacterized LOC100506113, transcript variant 4 (LOC100506113), misc_RNA"	NA	NA	NA	NA	NA	XR_159127.1	NA	NA	NA	NA	NA	Unknown
CUST_8632_PI429285431	1.089991	A	0.90791184	A	1.1345177336839	0	lncRNA	10184-1_{1..1969}	lnc-STK17A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STK17A-1:1	chr7	 43681755	 43683723	+	lnc-STK17A-1	lnc-STK17A-1:1	ENSG00000249805	ENST00000509705	C7orf44	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80chr7:43678859-43693421"	NA	inner
CUST_39537_PI429285431	2.1648395	A	2.3481395	A	0.880686221533459	0	lncRNA	40483-1_{1..3000}	n387441|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011edo.1||1.0786800|-0.3612195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387441|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011edo.1||1.0786800|-0.3612195	chr6	138661321	138664320	+	NA	NA	NA	NA	KIAA1244	NA	chr6:138651321-138665800	inner
CUST_23083_PI429285431	1.3456708	A	0.909214	A	1.35327665070953	0	lncRNA	24655-1_{1..542}	lnc-C2orf42-3:39	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:39	chr2	 70282846	 70283387	-	lnc-C2orf42-3	lnc-C2orf42-3:39	ENSG00000179818.6	PCBP1-AS1	NA	NA	NA	inter
LNCA_21_P0013811	0.90466815	A	0.90005034	A	1.00320595008246	0	lncRNA	TCONS_l2_00030467	NA	NA	NA	NA	XLOC_l2_015703	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015703), lincRNA [TCONS_l2_00030467]"	chrX:38342130-38342071	hs|Xp11.4	Agilent_HUMAN_G3V2	TCONS_l2_00030467	TCONS_l2_00030467	chrX	 38342071	 38342130	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17192_PI429285431	3.5846343	P	3.8957295	P	0.806029641767125	0	lncRNA	18903-1_{1..383}	lnc-WDR7-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR7-9:2	chr18	 53458948	 53459330	+	lnc-WDR7-9	lnc-WDR7-9:2	XLOC_012682	linc-WDR7-6	NA	NA	NA	inter
CUST_51789_PI429285431	5.7872896	P	5.7197304	P	1.04794223908275	0	lncRNA	55338-1_{1..1526}	hg19_lincRNAsTranscripts_TCONS_l2_00012881 range=chr19:14192337-14196579 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012881 range=chr19:14192337-14196579 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 14192337	 14193862	-	NA	NA	NA	NA	PRKACA	NA	chr19:14202500-14206579	inter
CUST_31475_PI429285431	5.1646147	P	5.363768	P	0.871061628683759	0	lncRNA	33241-1_{1..264}	n337954|U84506|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|339|NULL|-1.4485000|-0.0780320	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337954|U84506|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|339|NULL|-1.4485000|-0.0780320	chr22	 20012192	 20012455	+	NA	NA	NA	NA	C22orf25	NA	chr22:20008631-20022441	inner
CUST_17681_PI429285431	1.0588212	A	1.0788039	A	0.986244530920707	0	lncRNA	19410-1_{1..556}	lnc-AADAT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AADAT-1:1	chr4	170953935	170954490	-	lnc-AADAT-1	lnc-AADAT-1:1	XLOC_004155	linc-MFAP3L	MFAP3L	NA	chr4:170943935-170947429	inter
CUST_18650_PI429285431	7.181621	P	7.232364	P	0.965438991722301	0	lncRNA	20353-2_{3001..3414}	lnc-MAGEA8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAGEA8-2:1	chrX	149395576	149395989	+	lnc-MAGEA8-2	lnc-MAGEA8-2:1	ENSG00000235703	RP13-507I23.1	NA	NA	NA	inter
CUST_23830_PI429285431	6.622357	P	6.8123136	P	0.87663209228112	0	lncRNA	25393-1_{1..1914}	lnc-NUDT5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUDT5-1:1	chr10	 12289412	 12291325	-	lnc-NUDT5-1	lnc-NUDT5-1:1	ENSG00000228302.1	RP11-186N15.3	CDC123	"hg19_refFlat_CDC123:range=chr10:12238245-122923365'pad=0,hg19_refFlat_CDC123:range=chr10:12238245-122923365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80chr10:12279412-12292589"	NA	inner
LNCA_21_P0006416	0.9003567	A	0.8941558	A	1.00430738658816	0	lncRNA	ENST00000442155	NA	NA	NA	NA	XLOC_007943	NA	ENST00000442155	NA	NA	"BROAD Institute lincRNA (XLOC_007943), lincRNA [TCONS_00016972]"	chrX:22787024-22787083	hs|Xp22.11	Agilent_HUMAN_G3V2	ENST00000442155	ENST00000442155	chrX	 22787024	 22787083	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001447	1.0339481	A	2.5096793	A	0.359551117802881	0	lncRNA	ENST00000442712	NA	NA	NA	NA	XLOC_000642	NA	ENST00000442712	NA	NA	"BROAD Institute lincRNA (XLOC_000642), lincRNA [TCONS_00000429]"	chr1:246855064-246855123	hs|1q44	Agilent_HUMAN_G3V2	ENST00000442712	ENST00000442712	chr1	246855064	246855123	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003608	0.89992833	A	0.8934644	A	1.00449050709996	0	lncRNA	TCONS_00008064	NA	NA	NA	NA	XLOC_003531	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003531), lincRNA [TCONS_00008064]"	chr4:45196000-45196059	hs|4p12	Agilent_HUMAN_G3V2	TCONS_00008064	TCONS_00008064	chr4	 45196000	 45196059	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24716_PI429285431	2.4356856	A	1.8638031	A	1.48646191491681	0	lncRNA	26262-1_{1..623}	lnc-SRSF2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRSF2-2:2	chr17	 74964966	 74965588	-	lnc-SRSF2-2	lnc-SRSF2-2:2	ENSG00000260654.1	RP11-87G24.4	NA	NA	NA	inter
CUST_25242_PI429285431	1.0458707	A	0.91245687	A	1.09688617988972	0	lncRNA	26772-1_{1..557}	lnc-PPM1D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPM1D-1:1	chr17	 58628098	 58628654	+	lnc-PPM1D-1	lnc-PPM1D-1:1	ENSG00000259349.1	RP11-15E18.1	NA	NA	NA	inter
CUST_15297_PI429285431	1.454014	A	0.89421034	A	1.47406859393393	0	lncRNA	16974-1_{1..406}	lnc-DFFB-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DFFB-3:2	chr1	  4058116	  4058521	+	lnc-DFFB-3	lnc-DFFB-3:2	XLOC_000031	linc-AJAP1-5	NA	NA	NA	inter
CUST_47395_PI429285431	3.0219781	A	3.2757607	P	0.838694557967274	0	lncRNA	51441-3_{6001..6918}	"gi|408684414|ref|NR_073202.1| Homo sapiens Down syndrome cell adhesion molecule (DSCAM), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|408684414|ref|NR_073202.1| Homo sapiens Down syndrome cell adhesion molecule (DSCAM), transcript variant 3, non-coding RNA"	Chr21	 41390343	 41391260	-	1826	NR_073202.1	NA	NA	NA	NA	NA	inter
CUST_32218_PI429285431	4.252728	P	4.398716	P	0.903760243986203	0	lncRNA	33911-1_{1..1451}	n338792|BC080570|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1214|NULL|-0.4579780|-0.2214177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338792|BC080570|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1214|NULL|-0.4579780|-0.2214177	chr19	 49205708	 49207158	-	NA	NA	NA	NA	FUT2	"hg19_refFlat_FUT2:range=chr19:49206214-492072455'pad=0,hg19_refFlat_FUT2:range=chr19:49206214-492072455'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.50chr19:49199228-49209191"	NA	inner
CUST_52086_PI429285431	5.2526464	P	5.25255	P	1.00006682162067	0	lncRNA	55613-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00017551 range=chr22:17082492-17134956 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017551 range=chr22:17082492-17134956 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17085492	 17088491	+	NA	NA	NA	NA	CCT8L2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PARP4:range=chr13:24995257-250779145'pad=0,hg19_refFlat_PARP4:range=chr13:24995257-250779145'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-57.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SLC25A15:range=chr13:41367363-413838035'pad=0,hg19_refFlat_SLC25A15:range=chr13:41367363-413838035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20chr22:17072492-17073700"	NA	inter
CUST_33884_PI429285431	4.683635	P	2.7437801	A	3.83667058223528	0	lncRNA	35428-1_{1..3000}	n340675|D84223|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3138|NULL|15.7007000|-0.1941171	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340675|D84223|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3138|NULL|15.7007000|-0.1941171	chr5	145493027	145496026	-	NA	NA	NA	NA	LARS	NA	chr5:145492589-145562294	inner
LNCA_21_P0001122	1.6171626	A	0.92439556	A	1.61638071054493	0	lncRNA	TCONS_00000506	NA	NA	NA	NA	XLOC_000796	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000796), lincRNA [TCONS_00000506]"	chr1:40932522-40932463	hs|1p34.2	Agilent_HUMAN_G3V2	TCONS_00000506	TCONS_00000506	chr1	 40932463	 40932522	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001112	5.8010273	P	5.9691014	P	0.890030018173283	0	lncRNA	ENST00000418471	NA	NA	NA	NA	XLOC_000762	NA	ENST00000418471	NA	NA	"BROAD Institute lincRNA (XLOC_000762), lincRNA [TCONS_00000493]"	chr1:29197120-29197061	hs|1p35.3	Agilent_HUMAN_G3V2	ENST00000418471	ENST00000418471	chr1	 29197061	 29197120	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39289_PI429285431	0.8992727	A	0.9044667	A	0.996406266517091	0	lncRNA	40260-1_{1..3000}	n386283|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gjw.1||-1.1450400|-0.3158381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n386283|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gjw.1||-1.1450400|-0.3158381	chr20	 58713536	 58716535	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25712_PI429285431	0.9038966	A	0.90722877	A	0.997692981027628	0	lncRNA	27240-1_{1..425}	lnc-NPFFR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPFFR2-1:1	chr4	 73196204	 73196628	+	lnc-NPFFR2-1	lnc-NPFFR2-1:1	ENSG00000250877.1	RP11-373J21.1	ADAMTS3	"hg19_refFlat_ADAMTS3:range=chr4:73148853-734344795'pad=0,hg19_refFlat_ADAMTS3:range=chr4:73148853-734344795'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10chr4:73186204-73206468"	NA	inner
CUST_22256_PI429285431	0.9063021	A	0.90398675	A	1.00160616683093	0	lncRNA	23857-1_{1..516}	lnc-RAD51-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RAD51-1:1	chr15	 40938914	 40939429	+	lnc-RAD51-1	lnc-RAD51-1:1	ENSG00000259254.1	CTD-2339L15.3	CASC5	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70chr15:40928914-40949055"	NA	inner
CUST_46780_PI429285431	6.0184283	P	6.351692	P	0.793738835776214	0	lncRNA	50927-1_{1..826}	"gi|389985992|ref|NR_046824.1| Homo sapiens EPN2 intronic transcript 1 (non-protein coding) (EPN2-IT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|389985992|ref|NR_046824.1| Homo sapiens EPN2 intronic transcript 1 (non-protein coding) (EPN2-IT1), non-coding RNA"	Chr17	 19174706	 19175531	+	100874309	NR_046824.1	NA	NA	NA	NA	NA	inter
CUST_15678_PI429285431	2.3934817	A	2.4362838	A	0.970767624546881	0	lncRNA	17364-1_{1..933}	lnc-SLC38A9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC38A9-1:1	chr5	 54915814	 54916746	-	lnc-SLC38A9-1	lnc-SLC38A9-1:1	XLOC_004827	linc-PPAP2A-2	SLC38A9	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90chr5:54921676-54926463"	NA	inter
CUST_25792_PI429285431	2.6639054	A	3.0958114	A	0.741281802162746	0	lncRNA	27313-1_{1..470}	lnc-METTL11A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-METTL11A-1:1	chr9	132403362	132403831	+	lnc-METTL11A-1	lnc-METTL11A-1:1	ENSG00000234789.1	RP11-483H20.4	ASB6	"hg19_refFlat_ASB6:range=chr9:132400632-1324042785'pad=0,hg19_refFlat_ASB6:range=chr9:132400632-1324042785'pad=0 3'pad=0 strand=- repeatMasking=none,-98.00;hg19_refFlat_ASB6:range=chr9:132400069-1324042785'pad=0,hg19_refFlat_ASB6:range=chr9:132400069-1324042785'pad=0 3'pad=0 strand=- repeatMasking=none,-98.00chr9:132396883-132404448"	NA	inner
CUST_13828_PI429285431	1.3625779	A	1.1103253	A	1.19106537352805	0	lncRNA	15471-1_{1..572}	lnc-MDM1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MDM1-1:8	chr12	 68827589	 68828160	-	lnc-MDM1-1	lnc-MDM1-1:8	XLOC_010117	linc-MDM1-1	NA	NA	NA	inter
CUST_24223_PI429285431	1.2436993	A	0.89242554	A	1.27568643783314	0	lncRNA	25774-1_{1..557}	lnc-MYOM1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-MYOM1-3:1	chr18	  3770924	  3771480	-	lnc-MYOM1-3	lnc-MYOM1-3:1	ENSG00000266513.1	RP11-874J12.3	DLGAP1	NA	chr18:3760924-3781430	inner
CUST_15001_PI429285431	0.89623487	A	0.8891797	A	1.0049022480855	0	lncRNA	16663-1_{1..1610}	lnc-CTAGE5-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTAGE5-1:6	chr14	 39961459	 39963068	+	lnc-CTAGE5-1	lnc-CTAGE5-1:6	XLOC_010811	linc-LRFN5-3	NA	NA	NA	inter
CUST_37679_PI429285431	3.8517604	P	4.1759906	P	0.798724459824353	0	lncRNA	38772-1_{1..469}	n346166|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1716|NULL|-1.5128500|-0.1291441	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346166|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1716|NULL|-1.5128500|-0.1291441	chr7	 44027740	 44028208	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9676_PI429285431	3.169067	P	3.3274493	P	0.896029229171944	0	lncRNA	11193-1_{1..2158}	lnc-TMPRSS15-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TMPRSS15-9:1	chr21	 22175313	 22177470	-	lnc-TMPRSS15-9	lnc-TMPRSS15-9:1	XLOC_014019	linc-TMPRSS15-5	NA	NA	NA	inter
CUST_5695_PI429285431	0.8952685	A	0.93084824	A	0.975639625944384	0	lncRNA	5619-1_{1..1185}	"transcript_id ""ENST00000576171.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000576171.1"" | genecode_v17"	chr17	    33615	    34799	-	ENSG00000262836.1	ENST00000576171.1	AC108004.2	AC108004.2-001	DOC2B	NA	chr17:23615-31420	inter
CUST_49362_PI429285431	5.0943274	P	5.3846993	P	0.81769124576323	0	lncRNA	53175-1_{1..1430}	hg19_lincRNAsTranscripts_TCONS_l2_00022447 range=chr5:98264797-98266489 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022447 range=chr5:98264797-98266489 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 98264797	 98266226	+	NA	NA	NA	NA	CHD1	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-59.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60chr5:98254797-98262238"	NA	inter
CUST_4351_PI429285431	1.1016715	A	1.8819594	A	0.582250589416425	0	lncRNA	4306-1_{1..351}	"transcript_id ""ENST00000548619.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548619.1"" | genecode_v17"	chr12	 84678170	 84678520	+	ENSG00000257729.1	ENST00000548619.1	RP11-788H18.1	RP11-788H18.1-002	NA	NA	NA	inter
CUST_6174_PI429285431	2.7234836	A	2.1538086	A	1.48418918546299	0	lncRNA	6098-1_{1..704}	"transcript_id ""ENST00000600127.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600127.1"" | genecode_v17"	chr18	 45100967	 45101670	+	ENSG00000267761.2	ENST00000600127.1	CTD-2130O13.1	CTD-2130O13.1-002	NA	NA	NA	inter
CUST_37603_PI429285431	9.518183	P	9.468362	P	1.03513648302719	0	lncRNA	38701-1_{1..488}	n346079|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1629|NULL|-1.7274800|-0.2273063	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346079|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1629|NULL|-1.7274800|-0.2273063	chr14	 99439144	 99439631	+	NA	NA	NA	NA	NA	"hg19_refFlat_RPL3:range=chr22:39708945-397156025'pad=0,hg19_refFlat_RPL3:range=chr22:39708945-397156025'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60"	NA	inter
CUST_26068_PI429285431	1.4692017	A	1.212421	A	1.1948095714227	0	lncRNA	27581-1_{1..883}	lnc-SAP30-5:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:15	chr4	174462626	174463508	+	lnc-SAP30-5	lnc-SAP30-5:15	ENSG00000237125.3	RP11-471J12.1	NA	NA	NA	inter
CUST_32537_PI429285431	0.8958458	A	0.8907542	A	1.00353546324315	0	lncRNA	34203-1_{1..2359}	n339148|AK093857|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1578|NULL|-1.1052500|-0.2822832	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339148|AK093857|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1578|NULL|-1.1052500|-0.2822832	chr2	219684883	219687241	+	NA	NA	NA	NA	CYP27A1	NA	chr2:219674883-219680016	inner
CUST_3073_PI429285431	3.2241971	P	2.6413355	P	1.49781723957281	0	lncRNA	3052-1_{1..1093}	"transcript_id ""ENST00000522718.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522718.1"" | genecode_v17"	chr8	 37278859	 37279951	-	ENSG00000253161.1	ENST00000522718.1	RP11-150O12.1	RP11-150O12.1-003	NA	NA	NA	inter
CUST_29945_PI429285431	1.4065112	A	4.9628325	P	0.0850042450256789	0	lncRNA	31709-1_{1..259}	n334135|M68906|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196199|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196199|1.0708200|-0.1501579	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334135|M68906|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196199|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196199|1.0708200|-0.1501579	chr7	 97363016	 97363274	+	NA	NA	NA	NA	TAC1	NA	chr7:97361271-97369784	inner
CUST_33794_PI429285431	0.89742607	A	0.89149314	A	1.00412086119618	0	lncRNA	35347-1_{1..3000}	n340583|BX537598|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3045|NULL|-1.2447000|-0.3695800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n340583|BX537598|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3045|NULL|-1.2447000|-0.3695800	chr5	110018946	110021945	-	NA	NA	NA	NA	TMEM232	NA	chr5:110008946-110032955	inner
CUST_8658_PI429285431	1.399221	A	1.3093593	A	1.06426815441784	0	lncRNA	10209-1_{1..738}	lnc-CCDC54-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC54-2:6	chr3	106963985	106964722	+	lnc-CCDC54-2	lnc-CCDC54-2:6	ENSG00000243701	XLOC_002746	NA	NA	NA	inter
LNCA_21_P0009698	3.72265	P	2.5941696	A	2.18628336292471	0	lncRNA	TCONS_00026974	NA	NA	NA	NA	XLOC_013026	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013026), lincRNA [TCONS_00026974]"	chr19:29386500-29388790	hs|19q12	Agilent_HUMAN_G3V2	TCONS_00026974	TCONS_00026974	chr19	 29386500	 29388790	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33997_PI429285431	3.520135	P	3.5821764	P	0.957907729427151	0	lncRNA	35534-1_{1..2636}	n340810|AK097187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3273|NULL|-0.9961170|-0.2542048	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340810|AK097187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3273|NULL|-0.9961170|-0.2542048	chr6	  3025024	  3027659	+	NA	NA	NA	NA	NQO2	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80chr6:3015024-3019994"	NA	inter
CUST_20336_PI429285431	3.2357347	P	3.7224913	P	0.713627640266644	0	lncRNA	21978-1_{1..1269}	lnc-AC012652.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC012652.1.1-1:2	chr15	 41590239	 41591507	+	lnc-AC012652.1.1-1	lnc-AC012652.1.1-1:2	ENSG00000247556.2	OIP5-AS1	NA	"hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.22;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70"	NA	inter
CUST_30569_PI429285431	5.1181817	P	5.3911133	P	0.827636054422108	0	lncRNA	32351-1_{1..228}	n335776|X14675|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321445|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321445|1.6953000|-0.0810198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335776|X14675|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321445|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321445|1.6953000|-0.0810198	chr22	 23540519	 23540746	+	NA	NA	NA	NA	BCR	NA	chr22:23530519-23606020	inner
LNCA_21_P0002949	0.9015552	A	0.9173274	A	0.989127086157381	0	lncRNA	TCONS_00005994	NA	NA	NA	NA	XLOC_002619	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002619), lincRNA [TCONS_00005994]"	chr3:39422567-39422626	hs|3p22.1	Agilent_HUMAN_G3V2	TCONS_00005994	TCONS_00005994	chr3	 39422567	 39422626	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14721_PI429285431	1.5385853	A	0.90331537	A	1.55322833373072	0	lncRNA	16385-1_{1..1248}	lnc-RP11-1070N10.3.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-1070N10.3.1-1:2	chr14	 95795780	 95797027	+	lnc-RP11-1070N10.3.1-1	lnc-RP11-1070N10.3.1-1:2	XLOC_010915	linc-GLRX5-2	CLMN	NA	chr14:95785780-95786245	inter
CUST_24727_PI429285431	0.9087106	A	0.91630495	A	0.99474982829066	0	lncRNA	26273-1_{1..557}	lnc-MRPL39-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MRPL39-1:1	chr21	 26955082	 26955638	-	lnc-MRPL39-1	lnc-MRPL39-1:1	ENSG00000260583.1	LINC00515	MRPL39	NA	chr21:26957968-26965638	inter
CUST_45845_PI429285431	1.8147779	A	3.2320516	P	0.374419194161133	0	lncRNA	50177-1_{1..2395}	"gi|310120728|ref|XR_110888.1| PREDICTED: Homo sapiens uncharacterized LOC100505834 (LOC100505834), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310120728|ref|XR_110888.1| PREDICTED: Homo sapiens uncharacterized LOC100505834 (LOC100505834), misc_RNA"	NA	NA	NA	NA	NA	XR_110888.1	NA	NA	NA	NA	NA	Unknown
CUST_22004_PI429285431	3.1165137	A	3.1099796	A	1.00453936483569	0	lncRNA	23613-1_{1..528}	lnc-C5orf25-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C5orf25-2:1	chr5	175783000	175783527	+	lnc-C5orf25-2	lnc-C5orf25-2:1	ENSG00000251414.1	RP11-843P14.1	ARL10	NA	chr5:175792502-175793171	inner
CUST_36924_PI429285431	0.95354724	A	0.90379244	A	1.03508898548886	0	lncRNA	38080-1_{1..1103}	n345394|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_943|NULL|-1.2924100|-0.2466538	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345394|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_943|NULL|-1.2924100|-0.2466538	chr21	 11123087	 11124189	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_1628_PI429285431	11.739237	P	11.936005	P	0.872503001824954	0	lncRNA	1613-2_{3001..4208}	"transcript_id ""ENST00000445430.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445430.1"" | genecode_v17"	chr3	195387948	195389155	+	ENSG00000242086.3	ENST00000445430.1	AC069513.3	AC069513.3-038	NA	NA	NA	inter
CUST_50758_PI429285431	1.0918913	A	1.401993	A	0.806584898573694	0	lncRNA	54422-1_{1..616}	hg19_lincRNAsTranscripts_TCONS_l2_00004706 range=chr11:88071678-88133346 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004706 range=chr11:88071678-88133346 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 88071678	 88072293	+	NA	NA	NA	NA	CTSC	NA	chr11:88061678-88070941	inter
CUST_26874_PI429285431	8.964554	P	9.18159	P	0.860331162243287	0	lncRNA	28391-1_{1..2449}	n323949|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054584|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054584|0.4057690|-0.2831840	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323949|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054584|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054584|0.4057690|-0.2831840	chr9	131377508	131379956	+	NA	NA	NA	NA	SPTAN1	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.34;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80chr9:131367508-131395944"	NA	inner
CUST_44357_PI429285431	0.91497386	A	0.9187105	A	0.99741330978274	0	lncRNA	48977-1_{1..1998}	"gi|299890841|ref|NR_033931.1| Homo sapiens uncharacterized LOC152742 (LOC152742), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299890841|ref|NR_033931.1| Homo sapiens uncharacterized LOC152742 (LOC152742), non-coding RNA"	Chr4	 14113592	 14115589	+	152742	NR_033931.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0007029	5.165532	P	5.812852	P	0.638465247767163	0	lncRNA	ENST00000419400	NA	NA	NA	NA	XLOC_008982	NA	ENST00000419400	THC2637505	NA	"BROAD Institute lincRNA (XLOC_008982), lincRNA [TCONS_00018629]"	chr10:127389085-127389026	hs|10q26.13	Agilent_HUMAN_G3V2	ENST00000419400	ENST00000419400	chr10	127389026	127389085	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35789_PI429285431	6.6869926	P	6.533642	P	1.11214939633579	0	lncRNA	37200-1_{1..1262}	n344470|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_18|NULL|-1.3205100|-0.2481187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344470|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_18|NULL|-1.3205100|-0.2481187	chr1	234791846	234793107	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_52219_PI429285431	1.6860777	A	1.4787242	A	1.15456828387328	0	lncRNA	55732-2_{3001..3567}	hg19_lincRNAsTranscripts_TCONS_00030013 range=chr6_ssto_hap7:4275023-4278589 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00030013 range=chr6_ssto_hap7:4275023-4278589 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6_ssto_hap7	  4278023	  4278589	+	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PPP1R2:range=chr3:195243694-1952698485'pad=0,hg19_refFlat_PPP1R2:range=chr3:195243694-1952698485'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50"	NA	Unknown
CUST_15378_PI429285431	2.8689184	A	1.6015447	A	2.4072295137459	0	lncRNA	17061-1_{1..456}	lnc-PRELID2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRELID2-1:3	chr5	144867057	144867512	-	lnc-PRELID2-1	lnc-PRELID2-1:3	XLOC_005041	linc-YIPF5-3	NA	NA	NA	inter
CUST_23555_PI429285431	1.0669684	A	0.9132621	A	1.1124236333021	0	lncRNA	25122-1_{1..545}	lnc-RPLP1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPLP1-2:4	chr15	 69988006	 69988550	+	lnc-RPLP1-2	lnc-RPLP1-2:4	ENSG00000259641.1	RP11-279F6.3	NA	NA	NA	inter
CUST_49504_PI429285431	0.95007366	A	0.9784284	A	0.98053787279809	0	lncRNA	53295-1_{1..1189}	hg19_lincRNAsTranscripts_TCONS_l2_00024098 range=chr6:25732627-25737937 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024098 range=chr6:25732627-25737937 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 25732627	 25733815	+	NA	NA	NA	NA	SLC17A4	NA	chr6:25732012-25747937	inter
LNCA_33_P3340752	2.6388657	A	2.9890552	A	0.78448104845235	0	lncRNA	XR_132784	XR_132784	XR_132784	100130887	Hs.650058	LOC100130887	uncharacterized LOC100130887	ENST00000437593	THC2674268	NA	"PREDICTED: Homo sapiens hypothetical LOC100130887 (LOC100130887), miscRNA [XR_132784]"	chr10:123711386-123711445	hs|10q26.13	Agilent_HUMAN_G3V2	XR_132784	XR_132784	chr10	123711386	123711445	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11828_PI429285431	0.8971336	A	0.8966192	A	1.00035661848294	0	lncRNA	13410-1_{1..263}	lnc-PCDH20-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH20-8:1	chr13	 64204770	 64205032	-	lnc-PCDH20-8	lnc-PCDH20-8:1	XLOC_010642	linc-PCDH20-9	NA	NA	NA	inter
CUST_50508_PI429285431	3.921139	P	4.3054743	P	0.76613190097218	0	lncRNA	54204-1_{1..441}	hg19_lincRNAsTranscripts_TCONS_l2_00030581 range=chrX:118011939-118012717 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030581 range=chrX:118011939-118012717 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	118011939	118012379	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001394	4.935675	P	4.768598	P	1.12278134593423	0	lncRNA	TCONS_00001215	NA	NA	NA	NA	XLOC_000482	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000482), lincRNA [TCONS_00001215]"	chr1:181906020-181906079	hs|1q25.3	Agilent_HUMAN_G3V2	TCONS_00001215	TCONS_00001215	chr1	181906020	181906079	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48061_PI429285431	1.7999725	A	3.0715413	P	0.414209113085374	0	lncRNA	51938-1_{1..3000}	"gi|410170074|ref|XR_172452.1| PREDICTED: Homo sapiens uncharacterized LOC101060760 (LOC101060760), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170074|ref|XR_172452.1| PREDICTED: Homo sapiens uncharacterized LOC101060760 (LOC101060760), misc_RNA"	NA	NA	NA	NA	NA	XR_172452.1	NA	NA	NA	NA	NA	Unknown
CUST_42609_PI429285431	6.114559	P	6.299218	P	0.879857017156703	0	lncRNA	45471-1_{1..103}	ENST00000517240 ncrna:snoRNA chromosome:GRCh37:3:3144597:3144699:1 gene:ENSG00000253049 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517240 ncrna:snoRNA chromosome:GRCh37:3:3144597:3144699:1 gene:ENSG00000253049 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	  3144597	  3144699	+	ENSG00000253049	ENST00000517240	NA	NA	IL5RA	NA	chr3:3134597-3152058	inner
CUST_50831_PI429285431	10.10301	P	10.362375	P	0.835455562992721	0	lncRNA	54478-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00004568 range=chr11:65266283-65273709 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004568 range=chr11:65266283-65273709 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65269283	 65272282	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00315587	2.3285637	A	2.5773485	A	0.841605011164338	0	lncRNA	XR_110015	XR_110015	XR_110015	NA	NA	LOC100506924	NA	ENST00000497310	THC2508366	NA	"PREDICTED: Homo sapiens hypothetical LOC100506924 (LOC100506924), miscRNA [XR_110015]"	chr3:58594720-58594661	hs|3p14.3	Agilent_HUMAN_G3V2	XR_110015	XR_110015	chr3	 58594661	 58594720	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18722_PI429285431	4.7271957	P	4.3718863	P	1.27925990160395	0	lncRNA	20420-1_{1..494}	lnc-PLCD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLCD1-1:1	chr3	 37903192	 37903685	-	lnc-PLCD1-1	lnc-PLCD1-1:1	ENSG00000235257	AC093415.2	CTDSPL	NA	chr3:37903669-37913271	inter
CUST_50075_PI429285431	1.6926215	A	2.525821	A	0.561283089837739	0	lncRNA	53808-1_{1..307}	hg19_lincRNAsTranscripts_TCONS_l2_00028266 range=chr8:82526030-82530464 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028266 range=chr8:82526030-82530464 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 82526030	 82526336	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17657_PI429285431	1.077481	A	0.9024991	A	1.12895024094824	0	lncRNA	19386-1_{1..532}	lnc-SEL1L3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEL1L3-1:3	chr4	 25867118	 25867649	-	lnc-SEL1L3-1	lnc-SEL1L3-1:3	XLOC_003911	linc-SEL1L3	SEL1L3	NA	chr4:25857118-25864610	inter
CUST_22655_PI429285431	0.9158211	A	0.91209006	A	1.00258950685263	0	lncRNA	24239-1_{1..860}	lnc-METTL21C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-METTL21C-2:1	chr13	103054477	103055336	-	lnc-METTL21C-2	lnc-METTL21C-2:1	ENSG00000243319.1	FGF14-IT1	FGF14	NA	chr13:103044477-103054124	inter
CUST_28613_PI429285431	0.8924164	A	0.9190836	A	0.981685492338671	0	lncRNA	30297-1_{1..709}	n325981|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047851|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047851|-1.0591700|-0.4385720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325981|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047851|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047851|-1.0591700|-0.4385720	chr10	 46699197	 46699905	-	NA	NA	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60"	NA	inter
CUST_34912_PI429285431	0.9071977	A	0.91164005	A	0.996925533503921	0	lncRNA	36335-1_{1..420}	n341829|AF086507|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4308|NULL|-1.0553800|-0.2580456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341829|AF086507|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4308|NULL|-1.0553800|-0.2580456	chr12	 12632119	 12632538	+	NA	NA	NA	NA	DUSP16	NA	chr12:12626216-12642530	inner
CUST_8716_PI429285431	1.4169881	A	0.9952264	A	1.33956231930369	0	lncRNA	10259-1_{1..2228}	lnc-RTN4R-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RTN4R-1:1	chr22	 20192176	 20194403	-	lnc-RTN4R-1	lnc-RTN4R-1:1	ENSG00000249923	XLOC_014299	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90"	NA	inter
CUST_43884_PI429285431	13.128557	P	12.900374	P	1.17135875389093	0	lncRNA	48603-1_{1..828}	"gi|209413710|ref|NR_024204.1| Homo sapiens long intergenic non-protein coding RNA 152 (LINC00152), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|209413710|ref|NR_024204.1| Homo sapiens long intergenic non-protein coding RNA 152 (LINC00152), transcript variant 1, non-coding RNA"	Chr2	 87754974	 87755801	+	112597	NR_024204.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0009370	2.788783	A	3.4168692	P	0.64703416625638	0	lncRNA	TCONS_00025784	NA	NA	NA	NA	XLOC_012592	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012592), lincRNA [TCONS_00025784]"	chr17:80312148-80312089	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_00025784	TCONS_00025784	chr17	 80312089	 80312148	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13787_PI429285431	1.2399774	A	1.4502885	A	0.864350824251365	0	lncRNA	15429-1_{1..294}	lnc-NXPH2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NXPH2-4:1	chr2	138836375	138836668	-	lnc-NXPH2-4	lnc-NXPH2-4:1	XLOC_002336	linc-CXCR4-1	NA	NA	NA	inter
CUST_45535_PI429285431	1.8624504	A	1.7503264	A	1.08081829465027	0	lncRNA	49941-1_{1..3000}	"gi|223468642|ref|NR_026795.1| Homo sapiens long intergenic non-protein coding RNA 202 (LINC00202), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223468642|ref|NR_026795.1| Homo sapiens long intergenic non-protein coding RNA 202 (LINC00202), non-coding RNA"	Chr10	 27220135	 27223134	-	387644	NR_026795.1	NA	NA	NA	NA	NA	inter
CUST_16539_PI429285431	6.0294986	P	6.1105723	P	0.945353822167093	0	lncRNA	18239-1_{1..590}	lnc-ZMAT5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZMAT5-1:1	chr22	 30115537	 30116126	-	lnc-ZMAT5-1	lnc-ZMAT5-1:1	XLOC_014338	linc-NIPSNAP1	CABP7	NA	chr22:30116344-30125848	inter
CUST_10366_PI429285431	6.929057	P	7.11674	P	0.878014700527979	0	lncRNA	11891-1_{1..486}	lnc-FBXO25-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXO25-3:1	chr8	   686445	   686930	+	lnc-FBXO25-3	lnc-FBXO25-3:1	XLOC_006680	linc-DLGAP2-8	ERICH1	NA	chr8:676445-681226	inter
CUST_51115_PI429285431	1.2333993	A	1.1250523	A	1.07799239482881	0	lncRNA	54752-1_{1..1306}	hg19_lincRNAsTranscripts_TCONS_l2_00006993 range=chr13:106359064-106384225 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006993 range=chr13:106359064-106384225 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	106359064	106360369	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48039_PI429285431	1.3289329	A	0.8934183	A	1.35239313689995	0	lncRNA	51920-1_{1..3000}	"gi|310118202|ref|XR_110620.1| PREDICTED: Homo sapiens uncharacterized LOC100131372 (LOC100131372), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118202|ref|XR_110620.1| PREDICTED: Homo sapiens uncharacterized LOC100131372 (LOC100131372), misc_RNA"	NA	NA	NA	NA	NA	XR_110620.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90"	NA	Unknown
CUST_41352_PI429285431	11.193305	P	11.164369	P	1.02025939808933	0	lncRNA	42424-1_{1..69}	ENST00000517165 ncrna:miRNA chromosome:GRCh37:12:39836850:39836918:-1 gene:ENSG00000252974 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517165 ncrna:miRNA chromosome:GRCh37:12:39836850:39836918:-1 gene:ENSG00000252974 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 39836850	 39836918	-	ENSG00000252974	ENST00000517165	NA	NA	KIF21A	NA	chr12:39826850-39837192	inner
CUST_767_PI429285431	0.90787935	A	0.9087932	A	0.999366768025091	0	lncRNA	759-1_{1..832}	"transcript_id ""ENST00000420828.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420828.1"" | genecode_v17"	chr2	 13863173	 13864004	+	ENSG00000227718.1	ENST00000420828.1	AC016730.1	AC016730.1-001	NA	NA	NA	inter
CUST_18483_PI429285431	4.611267	P	4.79501	P	0.880415835837531	0	lncRNA	20203-1_{1..3000}	lnc-ABCB9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ABCB9-1:1	chr12	123462447	123465446	-	lnc-ABCB9-1	lnc-ABCB9-1:1	ENSG00000256028	RP11-197N18.4	PITPNM2	"hg19_refFlat_ARL6IP4:range=chr12:123464935-1234671335'pad=0,hg19_refFlat_ARL6IP4:range=chr12:123464935-1234671335'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.30;hg19_refFlat_ARL6IP4:range=chr12:123464935-1234672235'pad=0,hg19_refFlat_ARL6IP4:range=chr12:123464935-1234672235'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.30;hg19_refFlat_OGFOD2:range=chr12:123460940-1234638935'pad=0,hg19_refFlat_OGFOD2:range=chr12:123460940-1234638935'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.80chr12:123468027-123476196"	NA	inner
CUST_51623_PI429285431	1.5038309	A	1.6389413	A	0.910600148661954	0	lncRNA	55194-1_{1..1297}	hg19_lincRNAsTranscripts_TCONS_l2_00011247 range=chr17:41448185-41465672 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011247 range=chr17:41448185-41465672 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 41448185	 41449481	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47070_PI429285431	3.0603735	P	3.32675	P	0.831405098344316	0	lncRNA	51156-1_{1..3000}	"gi|385648261|ref|NR_047665.1| Homo sapiens epidermal growth factor receptor pathway substrate 15-like 1 (EPS15L1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385648261|ref|NR_047665.1| Homo sapiens epidermal growth factor receptor pathway substrate 15-like 1 (EPS15L1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NR_047665.1	NA	NA	NA	NA	NA	Unknown
CUST_13251_PI429285431	10.568489	P	10.439589	P	1.09345966200961	0	lncRNA	14881-1_{1..312}	lnc-PTGES2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTGES2-1:6	chr9	130873961	130874272	-	lnc-PTGES2-1	lnc-PTGES2-1:6	XLOC_007858	linc-NAIF1	SLC25A25	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00chr9:130863961-130871524"	NA	inter
CUST_49971_PI429285431	3.1380024	P	3.3021722	P	0.89244192809714	0	lncRNA	53717-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00026970 range=chr7:149714423-149745413 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026970 range=chr7:149714423-149745413 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	149720423	149723422	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35011_PI429285431	7.2582383	P	5.4424105	P	3.52061580866536	0	lncRNA	36425-1_{1..741}	n341945|BC006127|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4426|NULL|-0.9788430|-0.2014427	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341945|BC006127|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4426|NULL|-0.9788430|-0.2014427	chr12	 64540891	 64541631	+	NA	NA	NA	NA	SRGAP1	NA	chr12:64530891-64541613	inner
CUST_47851_PI429285431	4.0458794	P	4.0470686	P	0.999176049007071	0	lncRNA	51756-1_{1..665}	"gi|397140230|ref|XR_159184.1| PREDICTED: Homo sapiens uncharacterized LOC100996748, transcript variant 2 (LOC100996748), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397140230|ref|XR_159184.1| PREDICTED: Homo sapiens uncharacterized LOC100996748, transcript variant 2 (LOC100996748), misc_RNA"	NA	NA	NA	NA	NA	XR_159184.1	NA	NA	NA	NA	NA	Unknown
CUST_52200_PI429285431	5.082986	P	5.0478306	P	1.02466718918856	0	lncRNA	55716-1_{1..300}	hg19_lincRNAsTranscripts_TCONS_l2_00017993 range=chr22:27620193-27620706 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017993 range=chr22:27620193-27620706 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 27620193	 27620492	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31996_PI429285431	4.6789665	P	4.7118535	P	0.977462323766246	0	lncRNA	33718-1_{1..298}	n338556|AF230316|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|961|NULL|-1.1471000|-0.2823787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338556|AF230316|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|961|NULL|-1.1471000|-0.2823787	chr1	231753507	231753804	+	NA	NA	NA	NA	DISC1	NA	chr1:231762561-231763805	inter
CUST_5633_PI429285431	10.814932	P	10.60299	P	1.15824624082189	0	lncRNA	5561-1_{1..685}	"transcript_id ""ENST00000567993.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567993.1"" | genecode_v17"	chr16	 79755209	 79755893	-	ENSG00000261390.1	ENST00000567993.1	RP11-345M22.2	RP11-345M22.2-003	NA	NA	NA	inter
CUST_24866_PI429285431	6.96063	P	7.433865	P	0.720347527750342	0	lncRNA	26407-1_{1..615}	lnc-ACSM5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACSM5-1:1	chr16	 20401930	 20402544	+	lnc-ACSM5-1	lnc-ACSM5-1:1	ENSG00000263237.1	RP11-429K17.1	PDILT	NA	chr16:20391930-20412486	inner
CUST_6232_PI429285431	0.8867937	A	0.9697338	A	0.944131618224419	0	lncRNA	6157-2_{3001..3217}	"transcript_id ""ENST00000567801.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000567801.1"" | genecode_v17"	chr18	 59418409	 59418625	+	ENSG00000260440.1	ENST00000567801.1	RP11-1096D5.1	RP11-1096D5.1-001	NA	NA	NA	inter
CUST_34537_PI429285431	0.9087847	A	1.3369724	A	0.743194793513589	0	lncRNA	35998-1_{1..670}	n341416|BC038544|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3886|NULL|-0.9216740|-0.1753756	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341416|BC038544|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3886|NULL|-0.9216740|-0.1753756	chr8	 10920161	 10920830	-	NA	NA	NA	NA	XKR6	NA	chr8:10910161-10934599	inner
CUST_35956_PI429285431	1.7275107	A	0.90974915	A	1.76266895614575	0	lncRNA	37310-3_{6001..9000}	n344585|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_133|NULL|-1.7306400|-0.3500855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344585|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_133|NULL|-1.7306400|-0.3500855	chr12	 92373961	 92376960	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70"	NA	inner
CUST_17956_PI429285431	1.2265174	A	1.4225919	A	0.872922512718359	0	lncRNA	19687-1_{1..528}	lnc-C1orf180-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf180-1:1	chr1	 85086440	 85086967	-	lnc-C1orf180-1	lnc-C1orf180-1:1	XLOC_000895	linc-CTBS	NA	NA	NA	inter
LNCA_21_P0008910	1.3499906	A	1.3268658	A	1.0161580417076	0	lncRNA	TCONS_00024343	NA	NA	NA	NA	XLOC_011661	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011661), lincRNA [TCONS_00024343]"	chr16:20219966-20220282	hs|16p12.3	Agilent_HUMAN_G3V2	TCONS_00024343	TCONS_00024343	chr16	 20219966	 20220282	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13687_PI429285431	1.7285088	A	1.118021	A	1.52677535069592	0	lncRNA	15327-1_{1..293}	lnc-EMX2-5:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EMX2-5:10	chr10	120007211	120007503	+	lnc-EMX2-5	lnc-EMX2-5:10	XLOC_008636	linc-NANOS1-3	NA	NA	NA	inter
CUST_39814_PI429285431	4.308839	P	4.004042	P	1.23524481498651	0	lncRNA	40724-1_{1..2633}	n406266|NR_003719|lncRNA|Homosapiens||RefGeneNoncode|NR_003719||4.3491400|-0.2551493	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406266|NR_003719|lncRNA|Homosapiens||RefGeneNoncode|NR_003719||4.3491400|-0.2551493	chr5	 85578261	 85580893	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008035	0.90334755	A	0.895953	A	1.00513866938872	0	lncRNA	TCONS_00021728	NA	NA	NA	NA	XLOC_010309	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010309), lincRNA [TCONS_00021728]"	chr13:24044816-24045100	hs|13q12.12	Agilent_HUMAN_G3V2	TCONS_00021728	TCONS_00021728	chr13	 24044816	 24045100	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35010_PI429285431	0.9022499	A	0.8974412	A	1.00333869792467	0	lncRNA	36424-1_{1..1784}	n341944|AK094077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4425|NULL|-1.1970300|-0.3042910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341944|AK094077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4425|NULL|-1.1970300|-0.3042910	chr12	 64392053	 64393836	+	NA	NA	NA	NA	SRGAP1	NA	chr12:64382053-64403594	inner
CUST_28718_PI429285431	0.90018725	A	0.9058778	A	0.996063380194872	0	lncRNA	30418-1_{1..832}	n326108|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046490|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046490|-1.2823400|-0.4185745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326108|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046490|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046490|-1.2823400|-0.4185745	chr10	  3519085	  3519916	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004043	1.9093916	A	0.89689964	A	2.01739272481483	0	lncRNA	TCONS_00009477	NA	NA	NA	NA	XLOC_004501	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004501), lincRNA [TCONS_00009477]"	chr5:108063489-108063548	hs|5q21.3	Agilent_HUMAN_G3V2	TCONS_00009477	TCONS_00009477	chr5	108063489	108063548	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4580_PI429285431	1.6555849	A	0.92095625	A	1.66396910830487	0	lncRNA	4529-1_{1..539}	"transcript_id ""ENST00000416261.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416261.1"" | genecode_v17"	chr13	 30948140	 30948678	-	ENSG00000238121.1	ENST00000416261.1	LINC00426	LINC00426-006	NA	NA	NA	inter
CUST_27307_PI429285431	1.0724555	A	0.9139035	A	1.1161663051094	0	lncRNA	28865-1_{1..2513}	n324459|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041386|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041386|0.0027539|-0.3405519	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324459|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041386|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041386|0.0027539|-0.3405519	chr6	 86153655	 86156167	-	NA	NA	NA	NA	NT5E	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.52;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70chr6:86159302-86166623"	NA	inter
CUST_28303_PI429285431	1.1248751	A	0.8937208	A	1.17377370973003	0	lncRNA	29946-1_{1..800}	n325606|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000072587|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000072587|-1.0592400|-0.1825195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325606|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000072587|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000072587|-1.0592400|-0.1825195	chr14	100485067	100485866	+	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90"	NA	inter
CUST_30024_PI429285431	5.357575	P	5.822107	P	0.724706128659474	0	lncRNA	31792-1_{1..388}	n334482|U18236|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218439|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218439|1.0462700|-0.0801625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334482|U18236|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218439|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218439|1.0462700|-0.0801625	chr9	139903447	139903834	-	NA	NA	NA	NA	ABCA2	NA	chr9:139901686-139914356	inner
CUST_34025_PI429285431	1.6164588	A	0.90280294	A	1.63995458150621	0	lncRNA	35558-1_{1..1150}	n340842|BC037167|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3306|NULL|1.6774400|-0.1333230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340842|BC037167|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3306|NULL|1.6774400|-0.1333230	chr6	 10412550	 10413699	+	NA	NA	NA	NA	TFAP2A	"hg19_refFlat_TFAP2A:range=chr6:10398650-104152185'pad=0,hg19_refFlat_TFAP2A:range=chr6:10398650-104152185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00chr6:10402550-10419797"	NA	inner
CUST_2337_PI429285431	0.9201516	A	1.4851768	A	0.675943609495085	0	lncRNA	2329-1_{1..821}	"transcript_id ""ENST00000597452.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597452.1"" | genecode_v17"	chr5	120658249	120659069	+	ENSG00000229855.3	ENST00000597452.1	CTC-546K23.1	CTC-546K23.1-003	NA	NA	NA	inter
CUST_15455_PI429285431	3.3514657	P	3.3459356	P	1.00384052922764	0	lncRNA	17143-1_{1..390}	lnc-RP11-863N1.2.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-863N1.2.1-5:1	chr18	 19745503	 19745892	-	lnc-RP11-863N1.2.1-5	lnc-RP11-863N1.2.1-5:1	XLOC_012786	linc-ABHD3-1	GATA6	NA	chr18:19749416-19755640	inter
CUST_15389_PI429285431	2.788949	A	2.524853	A	1.20088333416074	0	lncRNA	17073-1_{1..2012}	lnc-PMP22-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PMP22-2:1	chr17	 15182656	 15184667	-	lnc-PMP22-2	lnc-PMP22-2:1	XLOC_012397	linc-PMP22-1	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30"	NA	inter
CUST_27723_PI429285431	0.9010638	A	0.9116841	A	0.992665597966866	0	lncRNA	29304-1_{1..453}	n324937|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079785|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079785|-1.3579200|-0.3148831	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324937|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079785|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079785|-1.3579200|-0.3148831	chr20	 54304429	 54304881	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11728_PI429285431	7.557794	P	7.0436754	P	1.42812137679862	0	lncRNA	13307-1_{1..355}	lnc-C10orf136-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf136-1:9	chr10	 44439305	 44439659	+	lnc-C10orf136-1	lnc-C10orf136-1:9	XLOC_008473	linc-TMEM72-2	NA	NA	NA	inter
CUST_32042_PI429285431	6.760042	P	8.227089	M	0.361721937128257	0	lncRNA	33756-1_{1..1343}	n338603|BC015677|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1009|NULL|2.2974200|-0.2281672	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n338603|BC015677|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1009|NULL|2.2974200|-0.2281672	chr13	 25874261	 25875603	-	NA	NA	NA	NA	NUPL1	NA	chr13:25875666-25885576	inter
CUST_37222_PI429285431	5.46836	P	5.996316	P	0.693536636053558	0	lncRNA	38334-1_{1..777}	n345657|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1206|NULL|-1.3139200|-0.3620414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345657|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1206|NULL|-1.3139200|-0.3620414	chr4	183802680	183803456	+	NA	NA	NA	NA	DCTD	NA	chr4:183811244-183813457	inter
CUST_244_PI429201921	1.400587	A	0.91820645	A	1.39704699295711	0	lncRNA	186-2_{3001..6000}	TC02004912.hg.1	 TCONS_l2_00016125-XLOC_l2_008517 // Broad TUCP // linc-PDCD1-3 chr2:-:242967333-242968327 // chr2 // 100 // 100 // 0 // --- // 0///TCONS_l2_00015204-XLOC_l2_008517 // Broad TUCP // linc-PDCD1-3 chr2:-:242961959-242968317 // chr2 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr2:-:242961959-242968317	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00015204-XLOC_l2_008517	linc-PDCD1-3	chr2	242961959	242968317	-	NA	NA	NA	NA	PTPRU	NA	chr1:29646132-29653325	Unknown
CUST_30403_PI429285431	11.74336	P	11.610677	P	1.09633066795227	0	lncRNA	32183-1_{1..202}	n335532|BC070215|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264173|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264173|0.1494630|-0.1958385	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335532|BC070215|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264173|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264173|0.1494630|-0.1958385	chr8	 74204580	 74204781	-	NA	NA	NA	NA	RPL7	NA	chr8:74194580-74205869	inner
CUST_33042_PI429285431	3.9737558	P	4.4967194	P	0.69594075466718	0	lncRNA	34655-1_{1..213}	n339731|U67849|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2176|NULL|-0.7812190|-0.1979732	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339731|U67849|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2176|NULL|-0.7812190|-0.1979732	chr3	186666513	186666725	+	NA	NA	NA	NA	ST6GAL1	NA	chr3:186656513-186676727	inner
CUST_14634_PI429285431	1.2091138	A	1.0214701	A	1.13890206973244	0	lncRNA	16305-1_{1..3000}	lnc-RAB23-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB23-3:1	chr6	 58239194	 58242193	-	lnc-RAB23-3	lnc-RAB23-3:1	XLOC_005753	linc-RAB23-4	NA	NA	NA	inter
CUST_8849_PI429285431	0.9035632	A	0.9016174	A	1.00134963572359	0	lncRNA	10388-1_{1..1142}	lnc-COL4A5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COL4A5-1:1	chrX	107981659	107982800	+	lnc-COL4A5-1	lnc-COL4A5-1:1	ENSG00000237863	RP6-24A23.3	IRS4	NA	chrX:107975727-107979607	inter
CUST_5482_PI429285431	1.2756817	A	1.0590228	A	1.16203933116838	0	lncRNA	5416-1_{1..546}	"transcript_id ""ENST00000563477.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563477.1"" | genecode_v17"	chr16	 29150982	 29151527	+	ENSG00000260517.1	ENST00000563477.1	RP11-426C22.5	RP11-426C22.5-002	NA	NA	NA	inter
CUST_9887_PI429285431	1.0545738	A	0.89853	A	1.11422747808104	0	lncRNA	11411-1_{1..504}	lnc-FGF12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGF12-2:1	chr3	191467745	191468248	-	lnc-FGF12-2	lnc-FGF12-2:1	XLOC_003374	linc-UTS2D-2	NA	NA	NA	inter
CUST_15828_PI429285431	1.2952931	A	1.3397405	A	0.969661158162896	0	lncRNA	17518-1_{1..466}	lnc-METAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-METAP1-1:1	chr4	 99885085	 99885550	+	lnc-METAP1-1	lnc-METAP1-1:1	XLOC_003616	linc-METAP1-1	NA	NA	NA	inter
CUST_7273_PI429285431	0.9066874	A	0.9033641	A	1.00230619120264	0	lncRNA	8116-1_{1..345}	"transcript_id ""ENST00000516267.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516267.1"" | genecode_v17"	chr10	 60628944	 60629288	+	ENSG00000252076.1	ENST00000516267.1	RN7SKP196	RN7SKP196-201	NA	NA	NA	inter
CUST_28425_PI429285431	1.1775234	A	1.7427893	A	0.675830844114666	0	lncRNA	30084-1_{1..1885}	n325747|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044728|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044728|-1.2062000|-0.3290328	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325747|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044728|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044728|-1.2062000|-0.3290328	chr13	 43494623	 43496507	+	NA	NA	NA	NA	EPSTI1	"hg19_refFlat_EPSTI1:range=chr13:43462630-435663015'pad=0,hg19_refFlat_EPSTI1:range=chr13:43462630-435663015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_EPSTI1:range=chr13:43462386-435663015'pad=0,hg19_refFlat_EPSTI1:range=chr13:43462386-435663015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80chr13:43484623-43512073"	NA	inner
CUST_632_PI429285431	1.2229787	A	1.210533	A	1.00866401908863	0	lncRNA	624-1_{1..824}	"transcript_id ""ENST00000591015.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591015.1"" | genecode_v17"	chr2	   308987	   309810	-	ENSG00000235779.2	ENST00000591015.1	AC079779.5	AC079779.5-027	NA	NA	NA	inter
CUST_48859_PI429285431	3.1120198	A	3.0742185	A	1.02654815120551	0	lncRNA	52695-1_{1..410}	hg19_lincRNAsTranscripts_TCONS_l2_00019079 range=chr3:194489515-194542609 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019079 range=chr3:194489515-194542609 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	194489515	194489924	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9105_PI429285431	1.9535873	A	2.7922466	A	0.559162959157384	0	lncRNA	10626-2_{3001..3925}	lnc-C6orf125-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C6orf125-1:1	chr6	 33653151	 33654075	-	lnc-C6orf125-1	lnc-C6orf125-1:1	ENSG00000248398	ENST00000511225	ITPR3	"hg19_refFlat_ITPR3:range=chr6:33589380-336635575'pad=0,hg19_refFlat_ITPR3:range=chr6:33589380-336635575'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.30chr6:33640151-33662467"	NA	inner
CUST_33855_PI429285431	0.9145073	A	0.9277668	A	0.990851321129207	0	lncRNA	35399-1_{1..591}	n340641|S63356|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3103|NULL|3.3560000|-0.2879607	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340641|S63356|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3103|NULL|3.3560000|-0.2879607	chr5	135227934	135228524	-	NA	NA	NA	NA	SLC25A48	NA	chr5:135217934-135224326	inner
CUST_51863_PI429285431	3.6943986	P	3.396371	A	1.2294623877051	0	lncRNA	55415-1_{1..2451}	hg19_lincRNAsTranscripts_TCONS_l2_00012648 range=chr19:52196593-52208847 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012648 range=chr19:52196593-52208847 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 52196593	 52199043	+	NA	NA	NA	NA	HAS1	NA	chr19:52216365-52218847	inter
CUST_36061_PI429285431	1.1479236	A	0.89268875	A	1.19353001673703	0	lncRNA	37372-1_{1..1490}	n344654|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_202|NULL|-1.3077000|-0.2994643	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344654|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_202|NULL|-1.3077000|-0.2994643	chr11	 34736766	 34738255	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23183_PI429285431	0.92684066	A	0.92447966	A	1.00163786032375	0	lncRNA	24755-1_{1..537}	lnc-PPA2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPA2-3:1	chr4	106099120	106099656	-	lnc-PPA2-3	lnc-PPA2-3:1	ENSG00000251586.1	TET2-AS1	TET2	NA	chr4:106089120-106109220	inner
CUST_25356_PI429285431	1.2055413	A	0.92500097	A	1.21464971980809	0	lncRNA	26886-1_{1..774}	lnc-RP11-664D7.4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-664D7.4.1-1:1	chr8	 69007224	 69007997	-	lnc-RP11-664D7.4.1-1	lnc-RP11-664D7.4.1-1:1	ENSG00000255206.1	RP11-403D15.2	PREX2	NA	chr8:68997224-69017316	inner
LNCA_19_P00316164	0.91676253	A	0.92511326	A	0.994228434890944	0	lncRNA	ENST00000514368	NA	NA	NA	NA	XLOC_l2_011612	NA	ENST00000514368	THC2745102	NA	"BROAD Institute lincRNA (XLOC_l2_011612), lincRNA [TCONS_l2_00023403]"	chr5:67093355-67093414	hs|5q13.1	Agilent_HUMAN_G3V2	ENST00000514368	ENST00000514368	chr5	 67093355	 67093414	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006851	0.91717553	A	0.9250911	A	0.994528369173578	0	lncRNA	TCONS_00018151	NA	NA	NA	NA	XLOC_008430	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008430), lincRNA [TCONS_00018151]"	chr10:29656612-29657210	hs|10p11.23	Agilent_HUMAN_G3V2	TCONS_00018151	TCONS_00018151	chr10	 29656612	 29657210	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_343_PI429201921	5.6907215	P	6.1877522	P	0.708563620130201	0	lncRNA	225-1_{1..3000}	TC01006249.hg.1	TCONS_l2_00002826-XLOC_l2_001407 // Broad TUCP // linc-SMYD3 chr1:-:246679340-246687589 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:246679340-246687589	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00002826-XLOC_l2_001407	linc-SMYD3	chr1	246679340	246687589	-	NA	NA	NA	NA	SSBP3	NA	chr1:54871929-54872092	Unknown
CUST_48296_PI429285431	2.9302132	A	2.9509492	A	0.985729699957728	0	lncRNA	52154-1_{1..760}	hg19_lincRNAsTranscripts_TCONS_l2_00000121 range=chr1:16973219-16974203 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000121 range=chr1:16973219-16974203 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16973219	 16973978	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46844_PI429285431	6.06586	P	6.240403	P	0.886048146584087	0	lncRNA	50981-1_{1..3000}	"gi|345110651|ref|NR_045058.1| Homo sapiens upstream binding transcription factor, RNA polymerase I (UBTF), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|345110651|ref|NR_045058.1| Homo sapiens upstream binding transcription factor, RNA polymerase I (UBTF), transcript variant 4, non-coding RNA"	Chr17	 42282401	 42285400	-	7343	NR_045058.1	NA	NA	NA	NA	NA	inter
CUST_13553_PI429285431	0.8961946	A	0.8982985	A	0.998542750467575	0	lncRNA	15194-1_{1..567}	lnc-DCUN1D1-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCUN1D1-6:2	chr3	181894771	181895337	-	lnc-DCUN1D1-6	lnc-DCUN1D1-6:2	XLOC_003347	linc-DNAJC19-5	NA	NA	NA	inter
CUST_6678_PI429285431	0.8957225	A	0.92097163	A	0.9826508960446	0	lncRNA	6626-1_{1..626}	"transcript_id ""ENST00000416638.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416638.1"" | genecode_v17"	chr20	 26171625	 26172250	+	ENSG00000238129.1	ENST00000416638.1	RP3-410C9.2	RP3-410C9.2-001	NA	NA	NA	inter
CUST_25300_PI429285431	5.136281	P	5.174152	P	0.97409136398937	0	lncRNA	26830-1_{1..409}	lnc-AC018816.3.1-8:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC018816.3.1-8:6	chr3	  6784216	  6784624	-	lnc-AC018816.3.1-8	lnc-AC018816.3.1-8:6	ENSG00000226258.2	GRM7-AS3	NA	NA	NA	inter
CUST_40771_PI429285431	4.025561	P	3.297902	P	1.65594987081693	0	lncRNA	41491-2_{3001..5271}	n410491|NR_037633|lncRNA|Homosapiens||RefGeneNoncode|NR_037633||4.9840900|-0.3603942	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410491|NR_037633|lncRNA|Homosapiens||RefGeneNoncode|NR_037633||4.9840900|-0.3603942	chr1	 39331161	 39333431	-	NA	NA	NA	NA	RRAGC	NA	chr1:39318161-39325340	inter
CUST_12106_PI429285431	1.2656286	A	0.8948319	A	1.29306670419797	0	lncRNA	13703-1_{1..725}	lnc-ZNF146-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF146-1:6	chr19	 36811922	 36812646	+	lnc-ZNF146-1	lnc-ZNF146-1:6	XLOC_013054	linc-ZNF382-3	NA	NA	NA	inter
CUST_24157_PI429285431	3.9528656	P	4.196444	P	0.844647683472926	0	lncRNA	25708-1_{1..448}	lnc-ASH1L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASH1L-2:1	chr1	155580069	155580516	-	lnc-ASH1L-2	lnc-ASH1L-2:1	ENSG00000232519.1	RP11-29H23.4	MSTO1	"hg19_refFlat_MSTO1:range=chr1:155580040-1555840645'pad=0,hg19_refFlat_MSTO1:range=chr1:155580040-1555840645'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50chr1:155570069-155584758"	NA	inter
CUST_9771_PI429285431	0.95969397	A	0.9207621	A	1.02735292239836	0	lncRNA	11288-1_{1..1367}	lnc-CDC42EP5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDC42EP5-1:1	chr19	 55027251	 55028617	-	lnc-CDC42EP5-1	lnc-CDC42EP5-1:1	XLOC_013407	linc-CDC42EP5-1	LAIR2	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60chr19:55017251-55021900"	NA	inter
CUST_10129_PI429285431	1.2090781	A	1.627142	A	0.748428343195565	0	lncRNA	11652-3_{6001..6340}	lnc-GALNTL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GALNTL2-1:1	chr3	 16284167	 16284506	+	lnc-GALNTL2-1	lnc-GALNTL2-1:1	XLOC_002585	linc-OXNAD1	GALNTL2	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-16.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr3:16268167-16271253"	NA	inter
CUST_46143_PI429285431	1.048793	A	1.0527134	A	0.997286274621204	0	lncRNA	50393-2_{3001..3691}	"gi|300068995|ref|NR_033952.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|300068995|ref|NR_033952.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NR_033952.1	NA	NA	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60"	NA	Unknown
CUST_43468_PI429285431	11.004515	P	10.776349	P	1.17134495126395	0	lncRNA	48271-1_{1..3000}	"gi|379030593|ref|NR_046406.1| Homo sapiens thioredoxin domain containing 12 (endoplasmic reticulum) (TXNDC12), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379030593|ref|NR_046406.1| Homo sapiens thioredoxin domain containing 12 (endoplasmic reticulum) (TXNDC12), transcript variant 3, non-coding RNA"	Chr1	 52497769	 52500768	-	51060	NR_046406.1	NA	NA	NA	NA	NA	inter
CUST_6037_PI429285431	1.2567264	A	1.3683982	A	0.925514950324317	0	lncRNA	5963-1_{1..2031}	"transcript_id ""ENST00000412816.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412816.3"" | genecode_v17"	chr18	  1268312	  1270342	-	ENSG00000132204.9	ENST00000412816.3	LINC00470	LINC00470-001	NA	"hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-32.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80"	NA	inter
LNCA_21_P0005457	1.4101422	A	0.90650904	A	1.41777948522286	0	lncRNA	TCONS_00013660	NA	NA	NA	NA	XLOC_006321	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006321), lincRNA [TCONS_00013660]"	chr7:158775543-158775602	hs|7q36.3	Agilent_HUMAN_G3V2	TCONS_00013660	TCONS_00013660	chr7	158775543	158775602	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9442_PI429285431	2.2569423	A	3.4287457	P	0.443866151368312	0	lncRNA	10948-1_{1..412}	lnc-KLHL18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL18-1:1	chr3	 47206614	 47207025	+	lnc-KLHL18-1	lnc-KLHL18-1:1	XLOC_002636	linc-KLHL18-3	SETD2	NA	chr3:47196614-47205467	inter
CUST_17973_PI429285431	2.0280278	A	2.696469	P	0.62918614180108	0	lncRNA	19705-1_{1..619}	lnc-TAF1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TAF1A-1:1	chr1	222765501	222766119	-	lnc-TAF1A-1	lnc-TAF1A-1:1	XLOC_001217	linc-TAF1A	TAF1A	NA	chr1:222755501-222763275	inter
LNCA_21_P0008067	0.9077828	A	2.7103264	A	0.286668720418902	0	lncRNA	TCONS_00021796	NA	NA	NA	NA	XLOC_010399	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010399), lincRNA [TCONS_00021796]"	chr13:54927755-54927814	hs|13q14.3	Agilent_HUMAN_G3V2	TCONS_00021796	TCONS_00021796	chr13	 54927755	 54927814	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45263_PI429285431	1.7427893	A	1.6576352	A	1.06080104369899	0	lncRNA	49715-1_{1..3000}	"gi|224809565|ref|NR_027321.1| Homo sapiens uncharacterized LOC157381 (LOC157381), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224809565|ref|NR_027321.1| Homo sapiens uncharacterized LOC157381 (LOC157381), non-coding RNA"	Chr8	125954250	125957249	+	157381	NR_027321.1	NA	NA	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
CUST_19914_PI429285431	2.616769	A	2.554141	A	1.04436643747245	0	lncRNA	21569-1_{1..324}	lnc-GBP6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GBP6-1:1	chr1	 89735281	 89735604	+	lnc-GBP6-1	lnc-GBP6-1:1	ENSG00000237568.1	RP4-620F22.2	GBP5	"hg19_refFlat_GBP5:range=chr1:89726387-897352385'pad=0,hg19_refFlat_GBP5:range=chr1:89726387-897352385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90chr1:89725281-89745437"	NA	inner
CUST_20793_PI429285431	3.6629014	P	3.78469	P	0.919047542856957	0	lncRNA	22426-1_{1..568}	lnc-PARN-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PARN-6:4	chr16	 14109719	 14110286	-	lnc-PARN-6	lnc-PARN-6:4	ENSG00000262097.1	CTD-2135D7.5	NA	NA	NA	inter
CUST_2917_PI429285431	0.9040436	A	1.0315967	A	0.915382679995718	0	lncRNA	2898-1_{1..751}	"transcript_id ""ENST00000421825.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421825.1"" | genecode_v17"	chr7	119808399	119809149	+	ENSG00000233969.1	ENST00000421825.1	RP5-1006K12.1	RP5-1006K12.1-001	NA	NA	NA	inter
CUST_23146_PI429285431	0.9028038	A	0.9072878	A	0.996896753097849	0	lncRNA	24717-1_{1..405}	lnc-METTL22-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-METTL22-1:1	chr16	  8426061	  8426465	+	lnc-METTL22-1	lnc-METTL22-1:1	ENSG00000259819.1	RP11-568A19.1	NA	NA	NA	inter
CUST_46549_PI429285431	5.948626	P	6.1890106	P	0.846519613351955	0	lncRNA	50733-2_{3001..5958}	"gi|312261251|ref|NR_037582.1| Homo sapiens adaptor-related protein complex 3, sigma 2 subunit (AP3S2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|312261251|ref|NR_037582.1| Homo sapiens adaptor-related protein complex 3, sigma 2 subunit (AP3S2), transcript variant 3, non-coding RNA"	Chr15	 90376831	 90379788	-	10239	NR_037582.1	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40"	NA	inter
LNCA_21_P0002587	0.9035978	A	0.89901936	A	1.00317857376368	0	lncRNA	TCONS_00004747	NA	NA	NA	NA	XLOC_001426	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001426), lincRNA [TCONS_00004747]"	chr2:35041561-35041620	hs|2p22.3	Agilent_HUMAN_G3V2	TCONS_00004747	TCONS_00004747	chr2	 35041561	 35041620	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28563_PI429285431	2.4293828	A	2.3324513	A	1.06949630637275	0	lncRNA	30242-1_{1..3000}	n325920|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049333|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049333|-1.0773100|-0.3200604	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325920|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049333|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049333|-1.0773100|-0.3200604	chr10	 91579246	 91582245	+	NA	NA	NA	NA	NA	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00"	NA	inter
CUST_37643_PI429285431	0.8958575	A	0.89305896	A	1.00194168274003	0	lncRNA	38737-1_{1..3000}	n346122|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1672|NULL|-1.6589000|-0.3588181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346122|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1672|NULL|-1.6589000|-0.3588181	chr9	  1917164	  1920163	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70"	NA	inter
CUST_22952_PI429285431	3.4520192	P	3.7616482	P	0.806849219958114	0	lncRNA	24528-1_{1..744}	lnc-ARHGEF38-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARHGEF38-1:1	chr4	106629058	106629801	+	lnc-ARHGEF38-1	lnc-ARHGEF38-1:1	ENSG00000249823.1	RP11-311D14.2	GSTCD	"hg19_refFlat_INTS12:range=chr4:106603890-1066211625'pad=0,hg19_refFlat_INTS12:range=chr4:106603890-1066211625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr4:106629941-106639242"	NA	inner
CUST_14596_PI429285431	1.273241	A	1.2787228	A	0.996207515489221	0	lncRNA	16263-1_{1..285}	lnc-TTC35-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC35-1:1	chr8	109559533	109559817	+	lnc-TTC35-1	lnc-TTC35-1:1	XLOC_006901	linc-TRHR	NA	NA	NA	inter
CUST_27649_PI429285431	0.923053	A	0.9109886	A	1.00839746742021	0	lncRNA	29227-1_{1..540}	n324855|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171142|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171142|-1.0173300|-0.1645955	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324855|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171142|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171142|-1.0173300|-0.1645955	chr21	 25180860	 25181399	-	NA	NA	NA	NA	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40"	NA	inter
CUST_51119_PI429285431	0.8883667	A	1.1010587	A	0.862925550277937	0	lncRNA	54754-3_{6001..6649}	hg19_lincRNAsTranscripts_TCONS_l2_00007006 range=chr13:111461359-111472540 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007006 range=chr13:111461359-111472540 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	111467359	111468007	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4515_PI429285431	0.8933148	A	0.89036036	A	1.00204996005712	0	lncRNA	4464-1_{1..577}	"transcript_id ""ENST00000561864.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561864.1"" | genecode_v17"	chr12	130509038	130509614	-	ENSG00000261650.1	ENST00000561864.1	RP11-474D1.4	RP11-474D1.4-001	NA	NA	NA	inter
CUST_18749_PI429285431	2.0033932	A	2.3090012	A	0.809101162363426	0	lncRNA	20445-1_{1..666}	lnc-CLEC19A.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CLEC19A.1-1:2	chr16	 19315384	 19316049	+	lnc-CLEC19A.1-1	lnc-CLEC19A.1-1:2	ENSG00000188477	CLEC19A	NA	NA	NA	inner
CUST_47782_PI429285431	3.3235793	P	3.5004268	P	0.884633940571535	0	lncRNA	51707-1_{1..3000}	"gi|385137065|ref|NR_047603.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 33, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137065|ref|NR_047603.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 33, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047603.1	NA	NA	NA	NA	NA	inter
CUST_39051_PI429285431	1.2820429	A	0.9180327	A	1.28699834647771	0	lncRNA	40029-1_{1..300}	n385485|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zoc.1||-0.8490700|-0.3485748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385485|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zoc.1||-0.8490700|-0.3485748	chr9	 19786909	 19787208	-	NA	NA	NA	NA	SLC24A2	NA	chr9:19776909-19788591	inner
CUST_22700_PI429285431	0.88442254	A	0.8826506	A	1.00122896978032	0	lncRNA	24283-1_{1..486}	lnc-GREM2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GREM2-5:1	chr1	240063064	240063549	-	lnc-GREM2-5	lnc-GREM2-5:1	ENSG00000234601.1	CHRM3-AS1	CHRM3	NA	chr1:240053064-240072720	inner
CUST_40069_PI429285431	0.8960806	A	0.898343	A	0.998433052764484	0	lncRNA	40920-2_{3001..6000}	n407319|NR_026786|lncRNA|Homosapiens||RefGeneNoncode|NR_026786||3.9947600|-0.2471336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407319|NR_026786|lncRNA|Homosapiens||RefGeneNoncode|NR_026786||3.9947600|-0.2471336	chr3	197690070	197693069	+	NA	NA	NA	NA	IQCG	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20chr3:197677070-197686886"	NA	inner
CUST_18637_PI429285431	0.89688104	A	0.8962474	A	1.00043930224447	0	lncRNA	20341-1_{1..518}	lnc-PKHD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PKHD1-1:1	chr6	 52016168	 52016685	-	lnc-PKHD1-1	lnc-PKHD1-1:1	ENSG00000225613	RP11-771D21.2	NA	NA	NA	inter
CUST_6136_PI429285431	0.89269155	A	1.0652597	A	0.887261854474355	0	lncRNA	6062-1_{1..439}	"transcript_id ""ENST00000584566.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584566.1"" | genecode_v17"	chr18	 24977916	 24978354	+	ENSG00000263611.1	ENST00000584566.1	RP11-612A1.1	RP11-612A1.1-001	NA	NA	NA	inter
CUST_30168_PI429285431	0.9025553	A	0.8903943	A	1.00846498997619	0	lncRNA	31942-1_{1..465}	n334857|AJ310892|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247078|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247078|2.6795200|-0.2038910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334857|AJ310892|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247078|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247078|2.6795200|-0.2038910	chr3	 38651251	 38651715	-	NA	NA	NA	NA	SCN5A	NA	chr3:38641251-38673933	inner
CUST_36111_PI429285431	1.2525116	A	2.2518802	A	0.500218874456955	0	lncRNA	37403-1_{1..871}	n344688|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_237|NULL|-1.2894700|-0.3351627	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344688|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_237|NULL|-1.2894700|-0.3351627	chr5	 54162399	 54163269	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33282_PI429285431	0.9172137	A	1.4447043	A	0.693760400611197	0	lncRNA	34865-2_{3001..3477}	n339991|S60415|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2444|NULL|10.5568000|-0.2234389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339991|S60415|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2444|NULL|10.5568000|-0.2234389	chr10	 18432605	 18433081	+	NA	NA	NA	NA	NSUN6	NA	chr10:18834264-18840039	inner
CUST_7391_PI429285431	1.2926111	A	1.9168955	A	0.648741483768342	0	lncRNA	9036-2_{3001..3645}	lnc-NINJ1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NINJ1-2:1	chr9	 95780209	 95780853	-	lnc-NINJ1-2	lnc-NINJ1-2:1	ENSG00000248502	ENST00000513278	FGD3	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_FGD3:range=chr9:95738539-957978715'pad=0,hg19_refFlat_FGD3:range=chr9:95738539-957978715'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50chr9:95767209-95787226"	NA	inner
CUST_23229_PI429285431	1.2615503	A	1.0672593	A	1.14416173402182	0	lncRNA	24801-1_{1..450}	lnc-PCDH19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PCDH19-1:1	chrX	 96897471	 96897920	-	lnc-PCDH19-1	lnc-PCDH19-1:1	ENSG00000236256.4	DIAPH2-AS1	NA	NA	NA	inter
CUST_25661_PI429285431	1.7574896	A	1.9334116	A	0.885201622136484	0	lncRNA	27190-1_{1..332}	lnc-SLC38A8-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC38A8-2:4	chr16	 83837040	 83837371	-	lnc-SLC38A8-2	lnc-SLC38A8-2:4	ENSG00000260228.1	RP11-483P21.2	CDH13	NA	chr16:83827040-83830215	inter
CUST_19820_PI429285431	1.8057424	A	2.2754993	A	0.722086261991465	0	lncRNA	21477-1_{1..539}	lnc-GPR144-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR144-2:1	chr9	127103704	127104242	+	lnc-GPR144-2	lnc-GPR144-2:1	ENSG00000234236.1	RP11-101K10.8	NEK6	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.50chr9:127093704-127113792"	NA	inner
CUST_50030_PI429285431	1.2930558	A	0.90980995	A	1.30427297778561	0	lncRNA	53767-1_{1..603}	hg19_lincRNAsTranscripts_TCONS_l2_00028127 range=chr8:26234088-26240362 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028127 range=chr8:26234088-26240362 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 26234088	 26234690	-	NA	NA	NA	NA	PPP2R2A	NA	chr8:26224088-26230196	inter
CUST_28813_PI429285431	0.8959849	A	0.8921863	A	1.00263645823956	0	lncRNA	30521-1_{1..423}	n326225|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090715|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090715|-1.0722200|-0.2701377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326225|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090715|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090715|-1.0722200|-0.2701377	chr1	220067630	220068052	-	NA	NA	NA	NA	SLC30A10	NA	chr1:220087606-220090631	inter
CUST_11401_PI429285431	8.10979	P	6.6358542	P	2.77778665713749	0	lncRNA	12967-1_{1..380}	lnc-TGIF1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGIF1-1:6	chr18	  3478754	  3479133	+	lnc-TGIF1-1	lnc-TGIF1-1:6	XLOC_012611	linc-ARHGAP28-9	NA	NA	NA	inter
CUST_24359_PI429285431	0.9040783	A	0.9121776	A	0.994401722129391	0	lncRNA	25912-1_{1..578}	lnc-NDUFA5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFA5-1:3	chr7	123264597	123265174	-	lnc-NDUFA5-1	lnc-NDUFA5-1:3	ENSG00000230442.1	RP11-390E23.3	ASB15	"hg19_refFlat_ASB15:range=chr7:123254557-1232770355'pad=0,hg19_refFlat_ASB15:range=chr7:123254557-1232770355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80chr7:123254597-123274777"	NA	inner
CUST_17714_PI429285431	4.878257	P	4.891544	P	0.990832434149727	0	lncRNA	19444-1_{1..344}	lnc-CCNI-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCNI-1:2	chr4	 78076423	 78076766	-	lnc-CCNI-1	lnc-CCNI-1:2	XLOC_003993	linc-CCNI-2	CCNG2	NA	chr4:78078357-78086648	inter
CUST_51291_PI429285431	2.1263068	A	0.9038912	A	2.33337082149349	0	lncRNA	54897-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008984 range=chr15:32807008-32825694 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008984 range=chr15:32807008-32825694 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 32807008	 32810007	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90"	NA	inter
CUST_43841_PI429285431	6.147632	P	5.643471	P	1.41829830425297	0	lncRNA	48565-1_{1..3000}	"gi|301500680|ref|NR_024188.2| Homo sapiens protein phosphatase 1, regulatory subunit 21 (PPP1R21), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301500680|ref|NR_024188.2| Homo sapiens protein phosphatase 1, regulatory subunit 21 (PPP1R21), transcript variant 4, non-coding RNA"	Chr2	 48667908	 48670907	+	129285	NR_024188.2	NA	NA	NA	NA	NA	inter
CUST_41133_PI429285431	1.0766068	A	0.88965166	A	1.13835863173814	0	lncRNA	41917-1_{1..85}	ENST00000583105 proj_ncrna:miRNA chromosome:GRCh37:HG271_PATCH:79424904:79424988:-1 gene:ENSG00000266303 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583105 proj_ncrna:miRNA chromosome:GRCh37:HG271_PATCH:79424904:79424988:-1 gene:ENSG00000266303 gene_biotype:miRNA transcript_biotype:miRNA	chrHG271_PATCH	 79424904	 79424988	-	ENSG00000266303	ENST00000583105	NA	NA	NA	NA	NA	Unknown
CUST_10918_PI429285431	5.2163773	P	5.341936	P	0.916648991752774	0	lncRNA	12462-1_{1..310}	lnc-DNAJC15-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAJC15-2:1	chr13	 43787604	 43787913	+	lnc-DNAJC15-2	lnc-DNAJC15-2:1	XLOC_010367	linc-C13orf31-1	ENOX1	NA	chr13:43777604-43797647	inter
CUST_19431_PI429285431	1.4136348	A	0.891819	A	1.43576118421928	0	lncRNA	21091-1_{1..361}	lnc-MORF4L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MORF4L2-1:1	chrX	102881138	102881498	-	lnc-MORF4L2-1	lnc-MORF4L2-1:1	ENSG00000224031.1	TCEAL3-AS1	TCEAL1	NA	chrX:102883648-102885881	inter
CUST_37571_PI429285431	2.9441524	A	2.4336717	A	1.42452476226943	0	lncRNA	38674-1_{1..228}	n346048|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1598|NULL|-1.3276100|-0.1629646	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346048|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1598|NULL|-1.3276100|-0.1629646	chr1	   708387	   708614	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28794_PI429285431	7.1832376	P	7.452339	P	0.829836258395828	0	lncRNA	30502-1_{1..656}	n326201|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091397|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091397|-1.0165500|-0.2082210	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326201|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091397|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091397|-1.0165500|-0.2082210	chr1	223702315	223702970	-	NA	NA	NA	NA	CAPN8	NA	chr1:223714972-223729608	inner
CUST_42716_PI429285431	1.0758811	A	1.7970734	A	0.606595920229039	0	lncRNA	45650-1_{1..137}	ENST00000517250 ncrna:snoRNA chromosome:GRCh37:14:36225533:36225669:1 gene:ENSG00000253059 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517250 ncrna:snoRNA chromosome:GRCh37:14:36225533:36225669:1 gene:ENSG00000253059 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 36225533	 36225669	+	ENSG00000253059	ENST00000517250	NA	NA	RALGAPA1	NA	chr14:36215533-36235669	inner
CUST_18154_PI429285431	1.2759769	A	0.9000155	A	1.29770404577853	0	lncRNA	19888-1_{1..568}	lnc-ARHGEF35-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARHGEF35-1:9	chr7	144052431	144052998	-	lnc-ARHGEF35-1	lnc-ARHGEF35-1:9	ENSG00000244479	RP4-798C17.6	ARHGEF5	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20chr7:144052489-144062494"	NA	inner
CUST_27559_PI429285431	5.107521	P	5.2773914	P	0.888922531157328	0	lncRNA	29138-1_{1..2183}	n324749|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000318944|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000318944|0.7725620|-0.2223807	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324749|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000318944|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000318944|0.7725620|-0.2223807	chr22	 18566295	 18568477	+	NA	NA	NA	NA	PEX26	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.02;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30chr22:18560686-18573797"	NA	inner
CUST_37779_PI429285431	0.91801775	A	0.90027535	A	1.01237402705682	0	lncRNA	38877-1_{1..541}	n346291|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1841|NULL|-1.3396500|-0.2631934	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346291|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1841|NULL|-1.3396500|-0.2631934	chr7	 32625308	 32625848	-	NA	NA	NA	NA	AVL9	NA	chr7:32615308-32623779	inter
CUST_38806_PI429285431	6.097468	P	4.2062893	P	3.70938162132978	0	lncRNA	39799-1_{1..1994}	n384541|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003isk.1||-0.4713400|-0.3678720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384541|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003isk.1||-0.4713400|-0.3678720	chr4	170642340	170644333	+	NA	NA	NA	NA	C4orf27	NA	chr4:170650619-170654334	inner
CUST_45706_PI429285431	3.1887631	P	3.76226	P	0.671986008543945	0	lncRNA	50075-1_{1..504}	"gi|397139390|ref|XR_158863.1| PREDICTED: Homo sapiens uncharacterized LOC100506518, transcript variant 2 (LOC100506518), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139390|ref|XR_158863.1| PREDICTED: Homo sapiens uncharacterized LOC100506518, transcript variant 2 (LOC100506518), misc_RNA"	NA	NA	NA	NA	NA	XR_158863.1	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20"	NA	Unknown
CUST_42852_PI429285431	9.868104	P	9.6502	P	1.16304264763862	0	lncRNA	45896-1_{1..135}	ENST00000362917 ncrna:snoRNA chromosome:GRCh37:16:30430946:30431080:-1 gene:ENSG00000199787 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362917 ncrna:snoRNA chromosome:GRCh37:16:30430946:30431080:-1 gene:ENSG00000199787 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 30430946	 30431080	-	ENSG00000199787	ENST00000362917	NA	NA	ZNF771	NA	chr16:30420946-30429916	inter
CUST_614_PI429285431	8.749123	P	9.062493	P	0.804759718888555	0	lncRNA	606-1_{1..190}	"transcript_id ""ENST00000443207.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443207.1"" | genecode_v17"	chr1	236121179	236121368	-	ENSG00000229291.1	ENST00000443207.1	RP4-580N22.2	RP4-580N22.2-001	NID1	NA	chr1:236139130-236145125	inter
CUST_12305_PI429285431	1.2023497	A	1.242949	A	0.972250987435659	0	lncRNA	13918-1_{1..527}	lnc-AMY1B-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AMY1B-1:5	chr1	104068018	104068544	-	lnc-AMY1B-1	lnc-AMY1B-1:5	XLOC_000945	linc-COL11A1	RNPC3	NA	chr1:104068578-104078105	inter
CUST_27468_PI429285431	4.863007	P	5.649066	P	0.579926110293011	0	lncRNA	29039-2_{3001..3775}	n324645|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317428|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317428|-0.8744860|-0.2404222	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324645|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317428|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317428|-0.8744860|-0.2404222	chr22	 48500704	 48501478	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22647_PI429285431	5.3097663	P	5.753583	P	0.735187070629347	0	lncRNA	24232-2_{3001..4341}	lnc-XKR7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-XKR7-1:1	chr20	 30589850	 30591190	+	lnc-XKR7-1	lnc-XKR7-1:1	ENSG00000260903.1	RP1-310O13.12	XKR7	NA	chr20:30576850-30586256	inter
LNCA_21_P0008859	1.0214404	A	0.9072142	A	1.08239433971401	0	lncRNA	TCONS_00024182	NA	NA	NA	NA	XLOC_011544	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011544), lincRNA [TCONS_00024182]"	chr15:80580192-80578054	hs|15q25.1	Agilent_HUMAN_G3V2	TCONS_00024182	TCONS_00024182	chr15	 80578054	 80580192	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2317_PI429285431	1.4632292	A	0.8899407	A	1.4879112747105	0	lncRNA	2309-1_{1..706}	"transcript_id ""ENST00000333482.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000333482.4"" | genecode_v17"	chr5	115027159	115027864	-	ENSG00000249021.1	ENST00000333482.4	CTC-505O3.3	CTC-505O3.3-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80"	NA	inter
CUST_10023_PI429285431	1.122308	A	0.900455	A	1.16623053343159	0	lncRNA	11549-1_{1..257}	lnc-SYN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYN3-1:1	chr22	 32905135	 32905391	-	lnc-SYN3-1	lnc-SYN3-1:1	XLOC_014351	linc-BPIL2	SYN3	NA	chr22:32908539-32915176	inter
CUST_47152_PI429285431	1.6666951	A	1.7540679	A	0.941235212975498	0	lncRNA	51231-2_{3001..5250}	"gi|296531369|ref|NR_033679.1| Homo sapiens caspase recruitment domain family, member 8 (CARD8), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|296531369|ref|NR_033679.1| Homo sapiens caspase recruitment domain family, member 8 (CARD8), transcript variant 8, non-coding RNA"	Chr19	 48714343	 48716592	-	22900	NR_033679.1	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20"	NA	inter
CUST_33421_PI429285431	4.2025	P	4.9988194	P	0.575816326389155	0	lncRNA	35000-1_{1..3000}	n340150|BX648964|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2610|NULL|-0.7217750|-0.2663220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340150|BX648964|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2610|NULL|-0.7217750|-0.2663220	chr10	117816435	117819434	-	NA	NA	NA	NA	GFRA1	NA	chr10:117816436-117830910	inner
CUST_39717_PI429285431	4.2923174	P	3.3590043	P	1.90965642531666	0	lncRNA	40651-1_{1..3000}	n405639|NR_002807|lncRNA|Homosapiens||RefGeneNoncode|NR_002807||1.8470700|-0.3030433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405639|NR_002807|lncRNA|Homosapiens||RefGeneNoncode|NR_002807||1.8470700|-0.3030433	chr8	146220250	146223249	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00"	NA	inter
LNCA_21_P0013746	0.9170045	A	0.90586364	A	1.00775214921346	0	lncRNA	TCONS_l2_00030116	NA	NA	NA	NA	XLOC_l2_015438	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015438), lincRNA [TCONS_l2_00030116]"	chrX:1861134-1861193	hs|Xp22.33	Agilent_HUMAN_G3V2	TCONS_l2_00030116	TCONS_l2_00030116	chrX	  1861134	  1861193	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21817_PI429285431	1.3290153	A	1.4612724	A	0.91240287643483	0	lncRNA	23426-1_{1..777}	lnc-IFNG-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IFNG-3:1	chr12	 68064629	 68065405	-	lnc-IFNG-3	lnc-IFNG-3:1	ENSG00000235872.2	RP11-335O4.3	DYRK2	NA	chr12:68054629-68056444	inter
CUST_4724_PI429285431	4.1249933	P	3.2808766	P	1.79516530687867	0	lncRNA	4669-2_{3001..3426}	"transcript_id ""ENST00000551334.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551334.1"" | genecode_v17"	chr14	 19857098	 19857523	-	ENSG00000244306.5	ENST00000551334.1	CTD-2314B22.3	CTD-2314B22.3-001	NA	"hg19_refFlat_TOMM40:range=chr19:45394673-454064265'pad=0,hg19_refFlat_TOMM40:range=chr19:45394673-454064265'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.90"	NA	inter
CUST_3630_PI429285431	0.8950719	A	0.8902952	A	1.00331644340702	0	lncRNA	3600-1_{1..432}	"transcript_id ""ENST00000455612.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455612.1"" | genecode_v17"	chr10	 26866605	 26867036	-	ENSG00000236894.2	ENST00000455612.1	RP11-128B16.3	RP11-128B16.3-002	APBB1IP	NA	chr10:26856605-26856732	inter
CUST_16839_PI429285431	1.1181046	A	0.90692276	A	1.15763611843164	0	lncRNA	18547-1_{1..401}	lnc-TPD52-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPD52-1:1	chr8	 81220234	 81220634	-	lnc-TPD52-1	lnc-TPD52-1:1	XLOC_007131	linc-TPD52-2	NA	NA	NA	inter
CUST_13754_PI429285431	1.459161	A	1.7312692	A	0.82810855208563	0	lncRNA	15399-1_{1..300}	lnc-KIAA0226L-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA0226L-3:1	chr13	 46853921	 46854220	-	lnc-KIAA0226L-3	lnc-KIAA0226L-3:1	XLOC_010597	linc-LCP1-1	LRRC63	NA	chr13:46843921-46858181	inter
CUST_18204_PI429285431	0.9157045	A	0.9208325	A	0.996451850868599	0	lncRNA	19939-1_{1..639}	lnc-POLD3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-POLD3-3:1	chr11	 74126892	 74127530	+	lnc-POLD3-3	lnc-POLD3-3:1	ENSG00000255440	RP11-632K5.2	NA	NA	NA	inter
CUST_11819_PI429285431	0.9062175	A	0.9232008	A	0.988297091524741	0	lncRNA	13401-1_{1..1476}	lnc-CD47-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD47-2:3	chr3	107596749	107598224	-	lnc-CD47-2	lnc-CD47-2:3	XLOC_003208	linc-CBLB-9	NA	NA	NA	inter
CUST_5247_PI429285431	0.9130576	A	0.89782584	A	1.01061378227608	0	lncRNA	5187-2_{3001..3814}	"transcript_id ""ENST00000561283.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561283.2"" | genecode_v17"	chr15	 77820882	 77821695	+	ENSG00000259362.2	ENST00000561283.2	RP11-307C19.1	RP11-307C19.1-001	NA	NA	NA	inter
CUST_19623_PI429285431	6.4814568	P	6.5684524	P	0.941481335911415	0	lncRNA	21279-1_{1..686}	lnc-SRPK2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRPK2-2:2	chr7	104653379	104654064	-	lnc-SRPK2-2	lnc-SRPK2-2:2	ENSG00000228393.3	RP11-325F22.3	MLL5	NA	chr7:104654637-104663471	inter
CUST_4762_PI429285431	0.90593386	A	0.9168759	A	0.992444245144484	0	lncRNA	4707-1_{1..741}	"transcript_id ""ENST00000551227.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551227.1"" | genecode_v17"	chr14	 29406095	 29406835	+	ENSG00000258028.1	ENST00000551227.1	RP11-148E17.1	RP11-148E17.1-001	NA	NA	NA	inter
LNCA_21_P0008187	2.0397763	A	2.2207887	A	0.882083783632388	0	lncRNA	TCONS_00022065	NA	NA	NA	NA	XLOC_010670	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010670), lincRNA [TCONS_00022065]"	chr13:80644178-80644119	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00022065	TCONS_00022065	chr13	 80644119	 80644178	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38815_PI429285431	4.4114304	P	5.0075097	P	0.661549355854749	0	lncRNA	39808-1_{1..2228}	n384582|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jcr.2||0.1911460|-0.2854086	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384582|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jcr.2||0.1911460|-0.2854086	chr5	  1599038	  1601265	-	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-55.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-54.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-62.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30"	NA	inter
CUST_41978_PI429285431	0.91101944	A	0.9277763	A	0.988452223101823	0	lncRNA	43796-1_{1..82}	ENST00000408518 ncrna:miRNA chromosome:GRCh37:2:25551509:25551590:-1 gene:ENSG00000221445 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408518 ncrna:miRNA chromosome:GRCh37:2:25551509:25551590:-1 gene:ENSG00000221445 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 25551509	 25551590	-	ENSG00000221445	ENST00000408518	NA	NA	DNMT3A	NA	chr2:25541509-25561590	inner
LNCA_21_P0002830	2.4033003	A	0.9250727	A	2.78606245671394	0	lncRNA	AK303731	NA	AK303731	NA	NA	XLOC_002993	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002993), lincRNA [TCONS_00005711]"	chr4:25160925-25160866	hs|4p15.2	Agilent_HUMAN_G3V2	AK303731	AK303731	chr4	 25160866	 25160925	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12828_PI429285431	4.5576944	P	4.4928613	P	1.04596392913333	0	lncRNA	14455-1_{1..388}	lnc-LRP5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRP5-1:1	chr11	 68041829	 68042216	+	lnc-LRP5-1	lnc-LRP5-1:1	XLOC_009185	linc-LRP5-1	C11orf24	NA	chr11:68031829-68039469	inter
CUST_4272_PI429285431	1.0306267	A	0.91546595	A	1.08309572102057	0	lncRNA	4228-1_{1..592}	"transcript_id ""ENST00000547559.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547559.1"" | genecode_v17"	chr12	 55403530	 55404121	+	ENSG00000257870.1	ENST00000547559.1	RP11-616L12.1	RP11-616L12.1-001	NEUROD4	NA	chr12:55413729-55418031	inter
CUST_23886_PI429285431	0.9004345	A	0.90432096	A	0.997309736470969	0	lncRNA	25444-1_{1..2355}	lnc-RNF139-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF139-1:1	chr8	125503303	125505657	+	lnc-RNF139-1	lnc-RNF139-1:1	ENSG00000253106.1	RP11-158K1.3	TATDN1	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TATDN1:range=chr8:125500835-1255512875'pad=0,hg19_refFlat_TATDN1:range=chr8:125500835-1255512875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TATDN1:range=chr8:125500835-1255311195'pad=0,hg19_refFlat_TATDN1:range=chr8:125500835-1255311195'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50chr8:125500735-125513884"	NA	inner
CUST_4607_PI429285431	1.2852974	A	2.0348635	A	0.594782415317839	0	lncRNA	4555-1_{1..467}	"transcript_id ""ENST00000585327.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585327.1"" | genecode_v17"	chr13	 44482850	 44483316	+	ENSG00000233725.2	ENST00000585327.1	LINC00284	LINC00284-006	NA	NA	NA	inter
CUST_17298_PI429285431	0.89492416	A	0.8999867	A	0.996497064317134	0	lncRNA	19017-1_{1..3000}	lnc-KLF15-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF15-2:5	chr3	126009524	126012523	-	lnc-KLF15-2	lnc-KLF15-2:5	XLOC_003235	linc-ALDH1L1-2	LOC644662	NA	chr3:125999524-126010368	inter
CUST_12759_PI429285431	4.8563375	P	4.465134	P	1.31148699355885	0	lncRNA	14382-1_{1..733}	lnc-CEBPB-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CEBPB-3:1	chr20	 48782567	 48783299	+	lnc-CEBPB-3	lnc-CEBPB-3:1	XLOC_013557	linc-CEBPB-3	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
CUST_5180_PI429285431	4.681433	P	5.1514974	P	0.721932370935019	0	lncRNA	5121-1_{1..743}	"transcript_id ""ENST00000557910.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557910.1"" | genecode_v17"	chr15	 49393988	 49394730	+	ENSG00000259656.1	ENST00000557910.1	RP11-325E5.1	RP11-325E5.1-001	NA	NA	NA	inter
CUST_16192_PI429285431	3.542137	P	3.5363345	P	1.0040300855574	0	lncRNA	17897-1_{1..2737}	lnc-OR4M2-7:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR4M2-7:4	chr15	 20506666	 20509402	+	lnc-OR4M2-7	lnc-OR4M2-7:4	XLOC_011157	linc-OR4M2-5	NA	NA	NA	inter
CUST_46663_PI429285431	13.856115	P	14.04959	P	0.87449679388306	0	lncRNA	50833-1_{1..872}	"gi|373938437|ref|NR_024525.2| Homo sapiens family with sequence similarity 96, member B (FAM96B), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|373938437|ref|NR_024525.2| Homo sapiens family with sequence similarity 96, member B (FAM96B), transcript variant 2, non-coding RNA"	Chr16	 66965958	 66966829	-	51647	NR_024525.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0004541	9.802757	P	9.926303	P	0.917928698764361	0	lncRNA	TCONS_00010838	NA	NA	NA	NA	XLOC_004644	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004644), lincRNA [TCONS_00010838]"	chr5:173220825-173220884	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_00010838	TCONS_00010838	chr5	173220825	173220884	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002745	0.91726965	A	0.9188211	A	0.998925194824011	0	lncRNA	ENST00000487624	NA	NA	NA	NA	XLOC_002678	NA	ENST00000487624	NA	NA	"BROAD Institute lincRNA (XLOC_002678), lincRNA [TCONS_00006038]"	chr3:59104734-59104793	hs|3p14.2	Agilent_HUMAN_G3V2	ENST00000487624	ENST00000487624	chr3	 59104734	 59104793	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6102_PI429285431	1.2199371	A	0.9051342	A	1.24384170889476	0	lncRNA	6028-1_{1..654}	"transcript_id ""ENST00000581211.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581211.1"" | genecode_v17"	chr18	 14969000	 14969653	-	ENSG00000264301.1	ENST00000581211.1	RP11-527H14.3	RP11-527H14.3-002	NA	NA	NA	inter
CUST_11066_PI429285431	0.9129687	A	0.90509146	A	1.00547502013688	0	lncRNA	12617-1_{1..1079}	lnc-KATNAL1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KATNAL1-3:4	chr13	 30950964	 30952042	-	lnc-KATNAL1-3	lnc-KATNAL1-3:4	XLOC_010556	linc-KATNAL1-3	NA	NA	NA	inter
CUST_36117_PI429285431	3.1610937	P	3.0262103	P	1.09800406845658	0	lncRNA	37408-2_{3001..6000}	n344693|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_242|NULL|-1.5480700|-0.3232083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n344693|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_242|NULL|-1.5480700|-0.3232083	chr4	 24430775	 24433774	-	NA	NA	NA	NA	DHX15	"hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.72;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr4:24529087-24536490"	NA	inter
CUST_27668_PI429285431	0.9225905	A	1.8956134	A	0.509437511906675	0	lncRNA	29246-1_{1..760}	n324875|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170922|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170922|-1.0497800|-0.3277735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324875|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170922|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170922|-1.0497800|-0.3277735	chr21	 22041175	 22041934	+	NA	NA	NA	NA	NA	"hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.61;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.54"	NA	inter
CUST_51522_PI429285431	0.89961267	A	0.8963566	A	1.0022594845368	0	lncRNA	55095-1_{1..582}	hg19_lincRNAsTranscripts_TCONS_l2_00010689 range=chr17:29335847-29372673 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010689 range=chr17:29335847-29372673 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 29335847	 29336428	+	NA	NA	NA	NA	RNF135	NA	chr17:29325847-29326929	inter
CUST_26582_PI429285431	0.9090345	A	1.257273	A	0.785542643477398	0	lncRNA	28086-1_{1..3000}	lnc-SEC16B.1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC16B.1-2:4	chr1	177953341	177956340	-	lnc-SEC16B.1-2	lnc-SEC16B.1-2:4	ENSG00000254154.3	SEC16B	NA	NA	NA	inter
CUST_17937_PI429285431	1.1721336	A	0.8916848	A	1.21457266030554	0	lncRNA	19669-1_{1..607}	lnc-CXorf22-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CXorf22-1:1	chrX	 36032891	 36033497	+	lnc-CXorf22-1	lnc-CXorf22-1:1	XLOC_007949	linc-CXorf59	NA	NA	NA	inter
CUST_35362_PI429285431	6.495744	P	5.305129	P	2.28250022116375	0	lncRNA	36771-2_{3001..3500}	n342404|D26488|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4896|NULL|9.9238700|-0.3298988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342404|D26488|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4896|NULL|9.9238700|-0.3298988	chr2	 29120535	 29121034	+	NA	NA	NA	NA	WDR43	NA	chr2:29117533-29171080	inner
CUST_14627_PI429285431	0.9262507	A	0.93342024	A	0.995042781329393	0	lncRNA	16298-1_{1..1643}	lnc-THBS2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-THBS2-3:1	chr6	169562742	169564384	-	lnc-THBS2-3	lnc-THBS2-3:1	XLOC_005935	linc-DACT2-1	NA	NA	NA	inter
CUST_37502_PI429285431	6.0673637	P	6.161251	P	0.936994639867786	0	lncRNA	38605-1_{1..2001}	n345971|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1520|NULL|-1.4871900|-0.0854829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345971|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1520|NULL|-1.4871900|-0.0854829	chr16	 16411888	 16413888	+	NA	NA	NA	NA	LOC100288368	NA	chr16:16418988-16419785	inter
CUST_511_PI429285431	0.90492207	A	0.9140791	A	0.993672931203632	0	lncRNA	503-1_{1..901}	"transcript_id ""ENST00000569292.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569292.1"" | genecode_v17"	chr1	185624134	185625034	+	ENSG00000261729.1	ENST00000569292.1	GS1-204I12.4	GS1-204I12.4-001	NA	NA	NA	inter
CUST_49899_PI429285431	3.6074696	P	2.8513803	A	1.6889063116081	0	lncRNA	53648-1_{1..842}	hg19_lincRNAsTranscripts_TCONS_l2_00026714 range=chr7:76745901-76751560 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026714 range=chr7:76745901-76751560 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 76745901	 76746742	-	NA	NA	NA	NA	CCDC146	NA	chr7:76744671-76761560	inter
CUST_1534_PI429285431	1.6173961	A	0.9095596	A	1.63335286456256	0	lncRNA	1521-1_{1..838}	"transcript_id ""ENST00000497379.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000497379.2"" | genecode_v17"	chr3	164431889	164432726	-	ENSG00000241767.2	ENST00000497379.2	RP11-71H9.1	RP11-71H9.1-001	NA	NA	NA	inter
CUST_47643_PI429285431	7.906349	P	6.3363433	P	2.9690588718052	0	lncRNA	51629-3_{6001..7551}	"gi|324711010|ref|NR_037916.1| Homo sapiens X-linked inhibitor of apoptosis (XIAP), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|324711010|ref|NR_037916.1| Homo sapiens X-linked inhibitor of apoptosis (XIAP), transcript variant 3, non-coding RNA"	ChrX	123000017	123001567	+	331	NR_037916.1	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	inter
CUST_10334_PI429285431	1.7918534	A	2.0001702	A	0.865546480140865	0	lncRNA	11862-1_{1..260}	lnc-KLHDC7B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHDC7B-1:2	chr22	 50985997	 50986256	+	lnc-KLHDC7B-1	lnc-KLHDC7B-1:2	XLOC_014287	linc-KLHDC7B	KLHDC7B	NA	chr22:50986462-50989452	inter
CUST_10005_PI429285431	3.133115	P	2.5389986	A	1.50954775744045	0	lncRNA	11531-1_{1..1782}	lnc-FRMD1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRMD1-4:3	chr6	168191627	168193408	-	lnc-FRMD1-4	lnc-FRMD1-4:3	XLOC_005924	linc-TCP10-4	NA	NA	NA	inter
CUST_4900_PI429285431	13.367437	P	13.397873	P	0.97912434957454	0	lncRNA	4842-1_{1..721}	"transcript_id ""ENST00000553758.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553758.1"" | genecode_v17"	chr14	 77245295	 77246015	+	ENSG00000258610.1	ENST00000553758.1	RP11-488C13.7	RP11-488C13.7-001	VASH1	NA	chr14:77235295-77249363	inner
CUST_2275_PI429285431	0.90084743	A	1.2177094	A	0.80281419437431	0	lncRNA	2267-1_{1..563}	"transcript_id ""ENST00000511468.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511468.1"" | genecode_v17"	chr5	 99737145	 99737707	+	ENSG00000249787.1	ENST00000511468.1	RP11-346J10.1	RP11-346J10.1-001	NA	NA	NA	inter
CUST_13258_PI429285431	5.319593	P	5.5507283	P	0.851964191729217	0	lncRNA	14888-1_{1..481}	lnc-PRKD1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRKD1-4:1	chr14	 29533694	 29534174	-	lnc-PRKD1-4	lnc-PRKD1-4:1	XLOC_010985	linc-NOVA1-7	NA	NA	NA	inter
LNCA_21_P0009274	9.546894	P	9.785057	P	0.847824169511609	0	lncRNA	TCONS_00025498	NA	NA	NA	NA	XLOC_012313	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012313), lincRNA [TCONS_00025498]"	chr17:74803657-74803716	hs|17q25.2	Agilent_HUMAN_G3V2	TCONS_00025498	TCONS_00025498	chr17	 74803657	 74803716	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44631_PI429285431	0.887846	A	0.8875469	A	1.00020734181405	0	lncRNA	49197-1_{1..2143}	"gi|373938442|ref|NR_046113.1| Homo sapiens FLJ16171 protein (FLJ16171), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|373938442|ref|NR_046113.1| Homo sapiens FLJ16171 protein (FLJ16171), non-coding RNA"	Chr5	174346085	174348227	-	441116	NR_046113.1	NA	NA	NA	NA	NA	inter
CUST_31010_PI429285431	0.89096665	A	0.8876232	A	1.00232019042647	0	lncRNA	32798-1_{1..1011}	n337208|BC105597|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386411|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386411|2.3497300|-0.2782336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337208|BC105597|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386411|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386411|2.3497300|-0.2782336	chr12	 20963634	 20964644	+	NA	NA	NA	NA	SLCO1B3	NA	chr12:20963638-21038330	inner
CUST_36740_PI429285431	1.097503	A	1.4731113	A	0.770780351249632	0	lncRNA	37914-2_{3001..3109}	n345221|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_770|NULL|-1.3258900|-0.3596563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345221|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_770|NULL|-1.3258900|-0.3596563	chr13	 41431796	 41431904	-	NA	NA	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-16.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20"	NA	inter
CUST_3572_PI429285431	1.1017145	A	0.9152256	A	1.13799080446979	0	lncRNA	3542-1_{1..424}	"transcript_id ""ENST00000412695.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412695.1"" | genecode_v17"	chr10	   789932	   790355	+	ENSG00000231601.1	ENST00000412695.1	RP11-164C1.2	RP11-164C1.2-001	NA	NA	NA	inter
CUST_21365_PI429285431	0.8863791	A	1.7950206	A	0.532686454247496	0	lncRNA	22988-1_{1..1187}	lnc-GTF2IRD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTF2IRD2-1:1	chr7	 74143043	 74144229	-	lnc-GTF2IRD2-1	lnc-GTF2IRD2-1:1	ENSG00000232729.2	AC083884.8	GTF2I	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-32.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_GTF2IRD2:range=chr7:74211001-742515005'pad=0,hg19_refFlat_GTF2IRD2:range=chr7:74211001-742515005'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_GTF2IRD2B:range=chr7:74524757-745651035'pad=0,hg19_refFlat_GTF2IRD2B:range=chr7:74524757-745651035'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_GTF2I:range=chr7:74103463-741731685'pad=0,hg19_refFlat_GTF2I:range=chr7:74103463-741731685'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-62.80chr7:74133043-74153187"	NA	inner
CUST_28254_PI429285431	1.7825195	A	1.9337137	A	0.900504755480215	0	lncRNA	29890-1_{1..590}	n325547|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255467|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255467|-1.1925600|-0.5289042	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325547|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255467|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255467|-1.1925600|-0.5289042	chr17	 50959323	 50959912	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50202_PI429285431	1.0327388	A	1.3515046	A	0.801755471866162	0	lncRNA	53927-1_{1..621}	hg19_lincRNAsTranscripts_TCONS_l2_00029284 range=chr9:43072088-43074615 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029284 range=chr9:43072088-43074615 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 43072088	 43072708	-	NA	NA	NA	NA	ANKRD20A3	NA	chr9:43062088-43084615	inter
CUST_19508_PI429285431	2.3803332	A	1.8135225	A	1.48124542696601	0	lncRNA	21164-1_{1..501}	lnc-TMEM37-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM37-1:2	chr2	120243415	120243915	+	lnc-TMEM37-1	lnc-TMEM37-1:2	ENSG00000231013.1	AC013275.2	SCTR	NA	chr2:120233415-120253585	inner
CUST_24732_PI429285431	0.9144498	A	1.1846219	A	0.829220621664017	0	lncRNA	26278-1_{1..405}	lnc-IFIT5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IFIT5-1:2	chr10	 91227783	 91228187	+	lnc-IFIT5-1	lnc-IFIT5-1:2	ENSG00000234452.1	RP11-168O10.6	SLC16A12	NA	chr10:91217783-91237897	inner
CUST_1390_PI429285431	3.6525328	P	3.7914705	P	0.908187635204371	0	lncRNA	1379-1_{1..403}	"transcript_id ""ENST00000482003.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000482003.1"" | genecode_v17"	chr3	 80810193	 80810595	-	ENSG00000242828.1	ENST00000482003.1	RP11-47P18.1	RP11-47P18.1-001	NA	NA	NA	inter
CUST_26016_PI429285431	3.667701	P	3.7911766	P	0.917973492539408	0	lncRNA	27535-1_{1..798}	lnc-TMEM231-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM231-1:1	chr16	 75642315	 75643112	-	lnc-TMEM231-1	lnc-TMEM231-1:1	ENSG00000259992.1	RP11-77K12.8	ADAT1	NA	chr16:75632315-75652343	inter
CUST_5512_PI429285431	3.6313887	P	4.1377277	P	0.704006668718438	0	lncRNA	5443-1_{1..849}	"transcript_id ""ENST00000569557.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569557.2"" | genecode_v17"	chr16	 34442330	 34443178	+	ENSG00000260958.2	ENST00000569557.2	RP11-488I20.8	RP11-488I20.8-002	NA	NA	NA	inter
CUST_8787_PI429285431	7.7925587	P	7.261149	P	1.44534079099503	0	lncRNA	10327-1_{1..1321}	lnc-ALX4-8:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALX4-8:3	chr11	 43283657	 43284977	-	lnc-ALX4-8	lnc-ALX4-8:3	ENSG00000251557	ENST00000534639	NA	NA	NA	inter
CUST_44978_PI429285431	8.722062	P	8.71574	P	1.00439169181253	0	lncRNA	49488-1_{1..1712}	"gi|308522776|ref|NR_036682.1| Homo sapiens B-cell CLL/lymphoma 7B (BCL7B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|308522776|ref|NR_036682.1| Homo sapiens B-cell CLL/lymphoma 7B (BCL7B), transcript variant 3, non-coding RNA"	NW_003871064.1	  1065589	  1067300	-	9275	NR_036682.1	NA	NA	NA	NA	NA	Unknown
CUST_20019_PI429285431	2.0006187	A	1.3823003	A	1.53508484887006	0	lncRNA	21672-1_{1..540}	lnc-AC007405.2.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC007405.2.1-3:2	chr2	171674228	171674767	-	lnc-AC007405.2.1-3	lnc-AC007405.2.1-3:2	ENSG00000235934.1	AC007405.8	GAD1	NA	chr2:171673200-171684405	inner
CUST_40450_PI429285431	3.5181875	P	3.831768	P	0.804642306990597	0	lncRNA	41224-2_{3001..5945}	n409347|NR_033710|lncRNA|Homosapiens||RefGeneNoncode|NR_033710||1.6581600|-0.1888462	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409347|NR_033710|lncRNA|Homosapiens||RefGeneNoncode|NR_033710||1.6581600|-0.1888462	chr1	  3655547	  3658491	-	NA	NA	NA	NA	CCDC27	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50chr1:3668965-3673937"	NA	inter
CUST_23669_PI429285431	1.6640865	A	0.88224036	A	1.71932960028927	0	lncRNA	25234-1_{1..3000}	lnc-CDKN2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDKN2A-1:1	chr9	 21858909	 21861908	-	lnc-CDKN2A-1	lnc-CDKN2A-1:1	ENSG00000265194.1	RP11-70L8.4	MTAP	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MTAP:range=chr9:21802748-218620135'pad=0,hg19_refFlat_MTAP:range=chr9:21802748-218620135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80chr9:21848909-21865970"	NA	inner
CUST_24624_PI429285431	2.042457	A	2.369641	A	0.797090809827898	0	lncRNA	26173-1_{1..587}	lnc-LRRTM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRTM2-1:1	chr5	138088741	138089327	-	lnc-LRRTM2-1	lnc-LRRTM2-1:1	ENSG00000253404.1	AC034243.1	CTNNA1	NA	chr5:138089107-138098998	inter
CUST_31500_PI429285431	2.9092078	A	1.3765699	A	2.89314353457802	0	lncRNA	33263-1_{1..1889}	n337982|AK000776|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|368|NULL|-1.1257800|-0.3705974	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337982|AK000776|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|368|NULL|-1.1257800|-0.3705974	chr1	 64645310	 64647198	+	NA	NA	NA	NA	ROR1	NA	chr1:64635310-64644707	inner
CUST_23673_PI429285431	0.89967716	A	1.0543705	A	0.898323300654239	0	lncRNA	25238-1_{1..240}	lnc-ZNF609-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF609-2:1	chr15	 64988821	 64989060	+	lnc-ZNF609-2	lnc-ZNF609-2:1	ENSG00000264937.1	AC100830.5	OAZ2	NA	chr15:64979773-64995462	inner
CUST_24093_PI429285431	0.89192915	A	0.894644	A	0.998119978834741	0	lncRNA	25644-1_{1..625}	lnc-TKT-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TKT-1:3	chr3	 53381410	 53382034	-	lnc-TKT-1	lnc-TKT-1:3	ENSG00000162290.11	DCP1A	DCP1A	NA	chr3:53371410-53381654	inner
CUST_38956_PI429285431	4.63585	P	3.9756799	P	1.58026893330154	0	lncRNA	39941-2_{3001..3677}	n385130|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003teu.3||-0.0574725|-0.3113600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385130|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003teu.3||-0.0574725|-0.3113600	chr7	 35737847	 35738523	+	NA	NA	NA	NA	HERPUD2	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.20;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20chr7:35724847-35734772"	NA	inter
CUST_35981_PI429285431	0.90085316	A	0.923054	A	0.984729347526572	0	lncRNA	37324-4_{9001..10766}	n344599|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_147|NULL|-1.5340900|-0.2563807	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344599|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_147|NULL|-1.5340900|-0.2563807	chr2	 65049867	 65051632	-	NA	NA	NA	NA	SLC1A4	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr2:65187142-65193459"	NA	inter
CUST_34747_PI429285431	0.9032754	A	0.9058893	A	0.998189822935086	0	lncRNA	36190-1_{1..2797}	n341652|AK123408|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4123|NULL|-0.9733290|-0.3069913	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341652|AK123408|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4123|NULL|-0.9733290|-0.3069913	chr9	  5832648	  5835444	+	NA	NA	NA	NA	ERMP1	"hg19_refFlat_ERMP1:range=chr9:5787144-58330275'pad=0,hg19_refFlat_ERMP1:range=chr9:5787144-58330275'pad=0 3'pad=0 strand=- repeatMasking=none,-108.50chr9:5822648-5833081"	NA	inner
CUST_31515_PI429285431	0.91960067	A	0.9020119	A	1.01226622690741	0	lncRNA	33276-1_{1..3000}	n338003|AL833493|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|390|NULL|-0.3904640|-0.3000501	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338003|AL833493|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|390|NULL|-0.3904640|-0.3000501	chr22	 27596084	 27599083	+	NA	NA	NA	NA	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.66;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.52;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60"	NA	inter
CUST_43695_PI429285431	5.0140133	P	5.351496	P	0.791421026224629	0	lncRNA	48445-1_{1..574}	"gi|410170414|ref|XR_108328.3| PREDICTED: Homo sapiens uncharacterized LOC100506636 (LOC100506636), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170414|ref|XR_108328.3| PREDICTED: Homo sapiens uncharacterized LOC100506636 (LOC100506636), misc_RNA"	NA	NA	NA	NA	NA	XR_108328.3	NA	NA	NA	NA	NA	Unknown
CUST_15811_PI429285431	0.9034271	A	0.90989316	A	0.995528097607081	0	lncRNA	17501-1_{1..584}	lnc-CADM2-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CADM2-3:4	chr3	 84094756	 84095339	+	lnc-CADM2-3	lnc-CADM2-3:4	XLOC_002722	linc-CADM2-2	NA	NA	NA	inter
CUST_36775_PI429285431	0.9224803	A	0.92497915	A	0.998269428336861	0	lncRNA	37947-1_{1..1270}	n345254|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_803|NULL|-1.3870600|-0.4181397	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345254|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_803|NULL|-1.3870600|-0.4181397	chr14	 39839078	 39840347	+	NA	NA	NA	NA	NA	"hg19_refFlat_GLRX5:range=chr14:96001427-960104625'pad=0,hg19_refFlat_GLRX5:range=chr14:96001427-960104625'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
CUST_41602_PI429285431	7.053437	P	7.6938696	P	0.641520556489773	0	lncRNA	42954-1_{1..99}	ENST00000385000 ncrna:miRNA chromosome:GRCh37:19:3961412:3961510:-1 gene:ENSG00000207733 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385000 ncrna:miRNA chromosome:GRCh37:19:3961412:3961510:-1 gene:ENSG00000207733 gene_biotype:miRNA transcript_biotype:miRNA	chr19	  3961412	  3961510	-	ENSG00000207733	ENST00000385000	NA	NA	DAPK3	NA	chr19:3958452-3969826	inner
CUST_2546_PI429285431	2.256678	A	2.5918648	A	0.792681493650087	0	lncRNA	2534-1_{1..1605}	"transcript_id ""ENST00000412872.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412872.3"" | genecode_v17"	chr6	 68597538	 68599142	-	ENSG00000227706.3	ENST00000412872.3	RP11-301G19.1	RP11-301G19.1-001	NA	NA	NA	inter
CUST_13762_PI429285431	0.89478886	A	0.9015099	A	0.995352164844574	0	lncRNA	15405-1_{1..2234}	lnc-RP11-511B23.3.1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-511B23.3.1-2:4	chr12	 93501084	 93503317	+	lnc-RP11-511B23.3.1-2	lnc-RP11-511B23.3.1-2:4	XLOC_009839	linc-NUDT4-2	NA	NA	NA	inter
CUST_18029_PI429285431	6.071951	P	7.245163	P	0.443432986551438	0	lncRNA	19764-2_{3001..4956}	lnc-ADARB1-3:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ADARB1-3:11	chr21	 46719120	 46721075	+	lnc-ADARB1-3	lnc-ADARB1-3:11	XLOC_013981	linc-COL18A1-4	POFUT2	NA	chr21:46706120-46707811	inter
CUST_33955_PI429285431	3.00003	A	3.8444066	P	0.556951420263378	0	lncRNA	35494-2_{3001..4298}	n340759|BC036702|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3222|NULL|-0.8623130|-0.2665760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340759|BC036702|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3222|NULL|-0.8623130|-0.2665760	chr17	 55172505	 55173802	-	NA	NA	NA	NA	AKAP1	"hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00chr17:55162553-55183788"	NA	inner
CUST_13181_PI429285431	3.2813275	P	3.7816324	P	0.706957356622869	0	lncRNA	14808-1_{1..1982}	lnc-WDR4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR4-1:1	chr21	 44255970	 44257951	-	lnc-WDR4-1	lnc-WDR4-1:1	XLOC_014097	linc-RSPH1-1	WDR4	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-62.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60chr21:44263204-44267805"	NA	inter
CUST_31905_PI429285431	1.2763231	A	0.8893478	A	1.30764896043331	0	lncRNA	33636-1_{1..2468}	n338460|BC037859|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|857|NULL|-0.4564330|-0.2548473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n338460|BC037859|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|857|NULL|-0.4564330|-0.2548473	chr14	 94371075	 94373542	-	NA	NA	NA	NA	FAM181A	NA	chr14:94385240-94395954	inter
CUST_19199_PI429285431	0.90188503	A	0.89622253	A	1.00393265859744	0	lncRNA	20869-1_{1..778}	lnc-FRMD4B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FRMD4B-2:1	chr3	 70361702	 70362479	-	lnc-FRMD4B-2	lnc-FRMD4B-2:1	ENSG00000242120.2	RP11-231I13.2	NA	NA	NA	inter
CUST_50356_PI429285431	3.3669858	P	3.75265	P	0.765426523955799	0	lncRNA	54069-2_{3001..3657}	hg19_lincRNAsTranscripts_TCONS_l2_00029138 range=chr9:139442055-139447353 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029138 range=chr9:139442055-139447353 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	139445055	139445711	+	NA	NA	NA	NA	NOTCH1	NA	chr9:139432055-139440238	inter
CUST_6064_PI429285431	4.2269926	P	4.0269175	P	1.14875815245207	0	lncRNA	5989-1_{1..1009}	"transcript_id ""ENST00000580684.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580684.1"" | genecode_v17"	chr18	  5238549	  5239557	+	ENSG00000263753.1	ENST00000580684.1	LINC00667	LINC00667-005	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00"	NA	inter
CUST_15258_PI429285431	0.90875053	A	1.3253436	A	0.749191756223823	0	lncRNA	16930-1_{1..445}	lnc-NFE2L3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NFE2L3-2:1	chr7	 25806844	 25807288	+	lnc-NFE2L3-2	lnc-NFE2L3-2:1	XLOC_006015	linc-NFE2L3-2	NA	NA	NA	inter
CUST_11093_PI429285431	1.0482208	A	0.88994825	A	1.11595012465662	0	lncRNA	12647-1_{1..438}	lnc-EBF3-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EBF3-4:2	chr10	131178907	131179344	-	lnc-EBF3-4	lnc-EBF3-4:2	XLOC_008993	linc-MKI67-5	NA	NA	NA	inter
CUST_10984_PI429285431	1.0894557	A	1.1657817	A	0.948469968977037	0	lncRNA	12528-1_{1..533}	lnc-AMY1B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AMY1B-2:1	chr1	106029214	106029746	-	lnc-AMY1B-2	lnc-AMY1B-2:1	XLOC_000947	linc-AMY1A-3	NA	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00"	NA	inter
CUST_16849_PI429285431	1.8000798	A	1.9839246	A	0.880353713789906	0	lncRNA	18557-1_{1..324}	lnc-DIO3.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DIO3.1-2:1	chr14	101915084	101915407	+	lnc-DIO3.1-2	lnc-DIO3.1-2:1	XLOC_010938	linc-DIO3-2	NA	NA	NA	inter
CUST_51292_PI429285431	8.714146	P	8.735075	P	0.985597840415711	0	lncRNA	54897-2_{3001..5014}	hg19_lincRNAsTranscripts_TCONS_l2_00008984 range=chr15:32807008-32825694 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008984 range=chr15:32807008-32825694 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 32810008	 32812021	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90"	NA	inter
CUST_19027_PI429285431	0.9028777	A	0.8957949	A	1.00492149381257	0	lncRNA	20717-1_{1..582}	lnc-PSD4-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PSD4-1:14	chr2	113998778	113999359	+	lnc-PSD4-1	lnc-PSD4-1:14	ENSG00000258395	RP11-65I12.1	PAX8	NA	chr2:113988778-114008987	inner
CUST_30955_PI429285431	5.5827107	P	4.9570236	P	1.54294549587128	0	lncRNA	32743-1_{1..466}	n337074|DQ192293|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342394|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342394|2.6143900|-0.1574694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337074|DQ192293|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342394|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342394|2.6143900|-0.1574694	chr2	223916907	223917372	+	NA	NA	NA	NA	KCNE4	NA	chr2:223916862-223920355	inner
CUST_16276_PI429285431	4.088275	P	4.0485444	P	1.02792186092633	0	lncRNA	17980-1_{1..353}	lnc-RBM7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RBM7-1:1	chr11	114251165	114251517	+	lnc-RBM7-1	lnc-RBM7-1:1	XLOC_009282	linc-RBM7	NA	NA	NA	inter
CUST_18515_PI429285431	0.9018615	A	1.1539994	A	0.839651231048557	0	lncRNA	20229-1_{1..514}	lnc-VPS41-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-VPS41-1:1	chr7	 39053057	 39053570	-	lnc-VPS41-1	lnc-VPS41-1:1	ENSG00000233854	AC011292.2	POU6F2	NA	chr7:39043057-39063151	inner
CUST_5604_PI429285431	1.6677995	A	1.8630832	A	0.87340112831681	0	lncRNA	5533-1_{1..1018}	"transcript_id ""ENST00000563557.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563557.1"" | genecode_v17"	chr16	 71760878	 71761895	+	ENSG00000260612.1	ENST00000563557.1	RP11-432I5.4	RP11-432I5.4-001	AP1G1	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30chr16:71762903-71771895"	NA	inter
CUST_13266_PI429285431	2.3167107	A	2.7956617	A	0.717499136182176	0	lncRNA	14898-1_{1..422}	lnc-ELAVL4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELAVL4-2:1	chr1	 50772954	 50773375	+	lnc-ELAVL4-2	lnc-ELAVL4-2:1	XLOC_000185	linc-CDKN2C-4	NA	NA	NA	inter
CUST_50793_PI429285431	4.4029455	P	4.494282	P	0.938652786625597	0	lncRNA	54447-1_{1..1903}	hg19_lincRNAsTranscripts_TCONS_l2_00004893 range=chr11:3429919-3432082 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004893 range=chr11:3429919-3432082 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	  3429919	  3431821	-	NA	NA	NA	NA	NA	"hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0 3'pad=0 strand=- repeatMasking=none,-95.60;hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.60"	NA	inter
LNCA_21_P0014220	1.3036877	A	0.9064714	A	1.31696435674169	0	lncRNA	ENST00000518392	XR_108904	XR_108904	NA	NA	CA13	carbonic anhydrase XIII	ENST00000518392	NA	GO:0008270|GO:0004089|GO:0006730|GO:0046872|GO:0016829	"PREDICTED: Homo sapiens hypothetical LOC100507258 (LOC100507258), miscRNA [XR_108904]"	chr8:86142885-86142944	hs|8q21.2	Agilent_HUMAN_G3V2	ENST00000518392	ENST00000518392	chr8	 86142885	 86142944	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31011_PI429285431	3.262385	P	3.8569303	P	0.662253147297485	0	lncRNA	32799-1_{1..397}	n337209|BC105606|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386420|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386420|1.2008800|-0.2483423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337209|BC105606|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386420|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386420|1.2008800|-0.2483423	chr10	 96305572	 96305968	+	NA	NA	NA	NA	HELLS	NA	chr10:96305574-96324022	inner
CUST_11982_PI429285431	1.2394649	A	1.114682	A	1.09034364295145	0	lncRNA	13562-1_{1..444}	lnc-AC021860.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC021860.1-4:1	chr4	 38281292	 38281735	-	lnc-AC021860.1-4	lnc-AC021860.1-4:1	XLOC_003926	linc-RELL1-4	NA	NA	NA	inter
CUST_27918_PI429285431	3.1282644	P	2.6738853	P	1.37019298114615	0	lncRNA	29519-1_{1..815}	n325162|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331503|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331503|0.1425550|-0.2373561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325162|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331503|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331503|0.1425550|-0.2373561	chr2	114453955	114454769	+	NA	NA	NA	NA	NA	"hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90"	NA	inter
CUST_15384_PI429285431	8.290178	P	8.328775	P	0.973601300322283	0	lncRNA	17067-1_{1..1229}	lnc-TMEM105-2:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TMEM105-2:13	chr17	 79353522	 79354750	-	lnc-TMEM105-2	lnc-TMEM105-2:13	XLOC_012586	linc-TMEM105-1	LOC100130370	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.51;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30chr17:79352934-79357447"	NA	inter
CUST_22950_PI429285431	1.0191164	A	0.9222134	A	1.06947517900848	0	lncRNA	24526-1_{1..755}	lnc-C12orf42-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C12orf42-2:1	chr12	103572357	103573111	-	lnc-C12orf42-2	lnc-C12orf42-2:1	ENSG00000257703.1	RP11-328J6.1	NA	NA	NA	inter
CUST_19305_PI429285431	4.075857	P	4.6918225	P	0.65249307710183	0	lncRNA	20971-1_{1..463}	lnc-PYCARD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PYCARD-1:1	chr16	 31194473	 31194935	-	lnc-PYCARD-1	lnc-PYCARD-1:1	ENSG00000260304.1	RP11-388M20.6	FUS	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_FUS:range=chr16:31191536-312027595'pad=0,hg19_refFlat_FUS:range=chr16:31191536-312027595'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20chr16:31191431-31204606"	NA	inner
CUST_31607_PI429285431	3.5700316	P	4.116352	P	0.684764397634036	0	lncRNA	33363-1_{1..1903}	n338120|BC015716|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|508|NULL|-0.7561580|-0.1913484	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338120|BC015716|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|508|NULL|-0.7561580|-0.1913484	chr1	110438594	110440496	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3262_PI429285431	0.9094786	A	0.9251236	A	0.989214299676865	0	lncRNA	3240-1_{1..382}	"transcript_id ""ENST00000521504.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521504.1"" | genecode_v17"	chr8	109593291	109593672	+	ENSG00000253949.1	ENST00000521504.1	RP11-790J24.1	RP11-790J24.1-001	NA	NA	NA	inter
CUST_10575_PI429285431	12.7344055	P	12.84116	P	0.92867486926583	0	lncRNA	12107-1_{1..287}	lnc-FBLN2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBLN2-1:3	chr3	 13777134	 13777420	+	lnc-FBLN2-1	lnc-FBLN2-1:3	XLOC_002580	linc-TMEM43	NA	NA	NA	inter
CUST_40681_PI429285431	1.2189987	A	0.910233	A	1.23864751966032	0	lncRNA	41416-1_{1..599}	n410238|NR_037171_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037171_7||-1.0431000|-0.3957786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410238|NR_037171_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037171_7||-1.0431000|-0.3957786	chr6	  3500401	  3500999	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90"	NA	inter
CUST_18866_PI429285431	3.6449711	P	3.6567237	P	0.991886809480071	0	lncRNA	20559-1_{1..389}	lnc-SEPT7L-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SEPT7L-2:3	chr10	 38943366	 38943754	-	lnc-SEPT7L-2	lnc-SEPT7L-2:3	ENSG00000233867	RP11-453N3.4	NA	NA	NA	inter
CUST_23081_PI429285431	0.9171328	A	0.9037026	A	1.0093525697519	0	lncRNA	24652-1_{1..485}	lnc-ZNF217-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF217-3:1	chr20	 51825128	 51825612	-	lnc-ZNF217-3	lnc-ZNF217-3:1	ENSG00000227705.1	RP11-15M15.2	TSHZ2	NA	chr20:51815128-51835244	inner
CUST_29139_PI429285431	7.194219	P	6.5386972	P	1.57518556985233	0	lncRNA	30880-1_{1..2800}	n326647|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021667|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021667|-0.2480600|-0.3119848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326647|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021667|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021667|-0.2480600|-0.3119848	chr1	 32719217	 32722016	+	NA	NA	NA	NA	LCK	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-55.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.92;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80chr1:32716840-32736048"	NA	inner
CUST_43565_PI429285431	0.9215845	A	0.91207016	A	1.00661663177223	0	lncRNA	48339-1_{1..2742}	"gi|359718945|ref|NR_045603.1| Homo sapiens V-set domain containing T cell activation inhibitor 1 (VTCN1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|359718945|ref|NR_045603.1| Homo sapiens V-set domain containing T cell activation inhibitor 1 (VTCN1), transcript variant 4, non-coding RNA"	Chr1	117686209	117688950	-	79679	NR_045603.1	NA	NA	NA	NA	NA	inter
CUST_6211_PI429285431	0.8977845	A	0.90637964	A	0.994060014828124	0	lncRNA	6137-1_{1..369}	"transcript_id ""ENST00000591503.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591503.1"" | genecode_v17"	chr18	 55628463	 55628831	-	ENSG00000267209.1	ENST00000591503.1	RP11-693L9.2	RP11-693L9.2-002	NA	NA	NA	inter
CUST_2035_PI429285431	1.9369249	A	0.92705095	A	2.01373514996628	0	lncRNA	2026-1_{1..493}	"transcript_id ""ENST00000509455.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509455.1"" | genecode_v17"	chr5	  1856084	  1856576	-	ENSG00000250417.1	ENST00000509455.1	CTD-2194D22.2	CTD-2194D22.2-001	NA	NA	NA	inter
CUST_2987_PI429285431	0.9061761	A	0.9221909	A	0.988960770997415	0	lncRNA	2966-1_{1..397}	"transcript_id ""ENST00000524008.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524008.1"" | genecode_v17"	chr8	  8413248	  8413644	-	ENSG00000253343.1	ENST00000524008.1	CTD-3023L14.3	CTD-3023L14.3-001	NA	NA	NA	inter
CUST_51550_PI429285431	0.9063719	A	1.1393595	A	0.850871042733029	0	lncRNA	55115-2_{3001..4811}	hg19_lincRNAsTranscripts_TCONS_l2_00010574 range=chr17:14737965-14747525 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010574 range=chr17:14737965-14747525 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 14740965	 14742775	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.91;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50"	NA	inter
LNCA_21_P0014848	6.5841446	P	6.0900583	P	1.40842847461419	0	lncRNA	ENST00000515591	XR_132720	XR_132720	NA	Hs.662149	TMEM165	transmembrane protein 165	ENST00000515591	THC2513184	GO:0016020|GO:0016021	"PREDICTED: Homo sapiens hypothetical LOC100506486 (LOC100506486), miscRNA [XR_132720]"	chr4:56289428-56289487	hs|4q12	Agilent_HUMAN_G3V2	ENST00000515591	ENST00000515591	chr4	 56289428	 56289487	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32914_PI429285431	2.9837718	A	2.755053	A	1.17179386357191	0	lncRNA	34538-1_{1..676}	n339586|CR596518|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2030|NULL|-1.1805300|-0.2838838	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339586|CR596518|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2030|NULL|-1.1805300|-0.2838838	chr20	 14864895	 14865570	-	NA	NA	NA	NA	MACROD2	NA	chr20:14854895-14920142	inner
CUST_21680_PI429285431	1.3520555	A	1.1144993	A	1.17899385589248	0	lncRNA	23290-1_{1..1990}	lnc-FAM163B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM163B-1:1	chr9	136498109	136500098	-	lnc-FAM163B-1	lnc-FAM163B-1:1	ENSG00000261018.1	LL09NC01-254D11.1	DBH	NA	chr9:136501485-136508221	inter
CUST_30809_PI429285431	0.89519584	A	0.9795135	A	0.943230542686223	0	lncRNA	32596-1_{1..248}	n336735|Z75930|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328097|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328097|-1.3183900|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336735|Z75930|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328097|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328097|-1.3183900|-1.0000000	chr14	 22466246	 22466493	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46465_PI429285431	7.2687554	P	6.745124	P	1.4375691955457	0	lncRNA	50666-1_{1..2610}	"gi|229577438|ref|NR_027635.1| Homo sapiens spermatogenesis associated 5-like 1 (SPATA5L1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|229577438|ref|NR_027635.1| Homo sapiens spermatogenesis associated 5-like 1 (SPATA5L1), transcript variant 2, non-coding RNA"	Chr15	 45694519	 45697128	+	79029	NR_027635.1	NA	NA	NA	NA	NA	inter
CUST_11442_PI429285431	7.6932416	P	8.231332	P	0.688681868685781	0	lncRNA	13010-1_{1..432}	lnc-HEATR6-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HEATR6-1:6	chr17	 58165558	 58165989	-	lnc-HEATR6-1	lnc-HEATR6-1:6	XLOC_012538	linc-HEATR6-2	HEATR6	NA	chr17:58155558-58156292	inter
CUST_49793_PI429285431	2.5285578	A	2.4163976	A	1.08084541480528	0	lncRNA	53550-1_{1..2785}	hg19_lincRNAsTranscripts_TCONS_l2_00025908 range=chr7:62812765-62838089 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025908 range=chr7:62812765-62838089 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 62812765	 62815549	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49753_PI429285431	1.7485342	A	2.2458727	A	0.708412463709548	0	lncRNA	53522-1_{1..1258}	hg19_lincRNAsTranscripts_TCONS_l2_00026548 range=chr7:45766669-45768444 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026548 range=chr7:45766669-45768444 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 45766669	 45767926	-	NA	NA	NA	NA	ADCY1	NA	chr7:45756669-45762715	inter
CUST_5690_PI429285431	0.91145414	A	0.914673	A	0.997771343417488	0	lncRNA	5614-1_{1..2243}	"transcript_id ""ENST00000321214.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000321214.2"" | genecode_v17"	chr16	 89225628	 89227870	+	ENSG00000180422.3	ENST00000321214.2	LINC00304	LINC00304-001	CDH15	NA	chr16:89238163-89240083	inter
CUST_41378_PI429285431	0.9040266	A	0.9091127	A	0.996480791107293	0	lncRNA	42473-1_{1..83}	ENST00000384848 ncrna:miRNA chromosome:GRCh37:19:54197647:54197729:1 gene:ENSG00000207580 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384848 ncrna:miRNA chromosome:GRCh37:19:54197647:54197729:1 gene:ENSG00000207580 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54197647	 54197729	+	ENSG00000207580	ENST00000384848	NA	NA	NA	NA	NA	inter
CUST_45739_PI429285431	12.30589	P	11.501804	P	1.74603926171383	0	lncRNA	50088-1_{1..2846}	"gi|303304988|ref|NR_036542.1| Homo sapiens cysteinyl-tRNA synthetase (CARS), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|303304988|ref|NR_036542.1| Homo sapiens cysteinyl-tRNA synthetase (CARS), transcript variant 4, non-coding RNA"	Chr11	  3022152	  3024997	-	833	NR_036542.1	NA	NA	NA	NA	NA	inter
CUST_842_PI429285431	0.9099152	A	0.9018374	A	1.00561480857587	0	lncRNA	836-1_{1..384}	"transcript_id ""ENST00000431712.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431712.1"" | genecode_v17"	chr2	 37971476	 37971859	+	ENSG00000236572.1	ENST00000431712.1	AC006369.3	AC006369.3-001	NA	NA	NA	inter
CUST_4019_PI429285431	5.5099854	P	6.0150695	P	0.70461930152319	0	lncRNA	3980-1_{1..651}	"transcript_id ""ENST00000531511.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531511.1"" | genecode_v17"	chr11	 76365213	 76365863	-	ENSG00000254810.1	ENST00000531511.1	RP11-672A2.4	RP11-672A2.4-001	LRRC32	NA	chr11:76368568-76377756	inter
CUST_865_PI429285431	0.90184236	A	0.9092245	A	0.994896159553454	0	lncRNA	859-1_{1..604}	"transcript_id ""ENST00000441997.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000441997.1"" | genecode_v17"	chr2	 47419863	 47420466	-	ENSG00000234690.2	ENST00000441997.1	AC073283.4	AC073283.4-005	NA	NA	NA	inter
LNCA_21_P0009613	3.420324	P	3.8479345	P	0.743492193758715	0	lncRNA	TCONS_00026641	NA	NA	NA	NA	XLOC_012720	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012720), lincRNA [TCONS_00026641]"	chr18:72880472-72880531	hs|18q22.3	Agilent_HUMAN_G3V2	TCONS_00026641	TCONS_00026641	chr18	 72880472	 72880531	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23462_PI429285431	3.5295198	P	4.386455	P	0.552124222201562	0	lncRNA	25029-1_{1..477}	lnc-CTAGE1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTAGE1-1:4	chr18	 20311457	 20311933	-	lnc-CTAGE1-1	lnc-CTAGE1-1:4	ENSG00000266850.1	RP11-370A5.1	NA	NA	NA	inter
CUST_1083_PI429285431	1.437696	A	1.8993763	A	0.72614003414126	0	lncRNA	1072-1_{1..466}	"transcript_id ""ENST00000421326.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421326.1"" | genecode_v17"	chr2	140227345	140227810	+	ENSG00000229131.1	ENST00000421326.1	AC016710.1	AC016710.1-001	NA	NA	NA	inter
CUST_19124_PI429285431	1.0729582	A	1.5549154	A	0.716005611808695	0	lncRNA	20804-1_{1..551}	lnc-RP11-480I12.4.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-480I12.4.1-2:1	NA	NA	      550	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19294_PI429285431	4.7125645	P	4.161938	P	1.4647216230489	0	lncRNA	20961-1_{1..500}	lnc-RREB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RREB1-1:1	chr6	  7298818	  7299317	+	lnc-RREB1-1	lnc-RREB1-1:1	ENSG00000238221.1	RP11-69L16.4	SSR1	"hg19_refFlat_SSR1:range=chr6:7290097-73133535'pad=0,hg19_refFlat_SSR1:range=chr6:7290097-73133535'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20chr6:7288818-7309105"	NA	inner
CUST_24986_PI429285431	1.3863785	A	1.2952931	A	1.06517125409383	0	lncRNA	26526-1_{1..582}	lnc-AGGF1-3:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGGF1-3:15	chr5	 76462493	 76463074	+	lnc-AGGF1-3	lnc-AGGF1-3:15	ENSG00000250802.2	CTC-564N23.3	NA	NA	NA	inter
CUST_11639_PI429285431	1.6964531	A	1.6346914	A	1.0437395114493	0	lncRNA	13216-1_{1..573}	lnc-TMEM17-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM17-2:4	chr2	 62889743	 62890315	-	lnc-TMEM17-2	lnc-TMEM17-2:4	XLOC_002117	linc-TMEM17	NA	NA	NA	inter
CUST_13056_PI429285431	2.0925326	A	1.9327519	A	1.11711731531627	0	lncRNA	14681-1_{1..417}	lnc-YEATS4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-YEATS4-1:1	chr12	 69801259	 69801675	+	lnc-YEATS4-1	lnc-YEATS4-1:1	XLOC_009798	linc-FRS2-2	NA	NA	NA	inter
CUST_38429_PI429285431	1.5993388	A	1.5701544	A	1.02043507919051	0	lncRNA	39456-1_{1..1029}	n382539|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002aam.2||4.5460800|-0.2226761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382539|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002aam.2||4.5460800|-0.2226761	chr15	 51588149	 51589177	-	NA	NA	NA	NA	CYP19A1	NA	chr15:51578149-51599178	inner
CUST_46062_PI429285431	1.0791531	A	1.4230524	A	0.787908880107685	0	lncRNA	50337-1_{1..1195}	"gi|222831569|ref|NR_026723.1| Homo sapiens SAP domain containing ribonucleoprotein (SARNP), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|222831569|ref|NR_026723.1| Homo sapiens SAP domain containing ribonucleoprotein (SARNP), transcript variant 2, non-coding RNA"	Chr12	 56146247	 56147441	-	84324	NR_026723.1	NA	NA	NA	NA	NA	inter
CUST_11817_PI429285431	2.6519425	A	3.1621325	A	0.702129962692971	0	lncRNA	13399-1_{1..1199}	lnc-PPP3CC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP3CC-1:1	chr8	 22408060	 22409258	+	lnc-PPP3CC-1	lnc-PPP3CC-1:1	XLOC_006738	linc-SORBS3	SORBS3	NA	chr8:22409251-22418678	inter
CUST_31019_PI429285431	2.611566	A	2.9454558	A	0.793394444167866	0	lncRNA	32808-1_{1..444}	n337223|BC113824|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000387198|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000387198|-1.2600500|-0.3986320	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337223|BC113824|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000387198|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000387198|-1.2600500|-0.3986320	chr3	  9860318	  9860761	-	NA	NA	NA	NA	ARPC4-TTLL3	"hg19_refFlat_TTLL3:range=chr3:9851691-98771735'pad=0,hg19_refFlat_TTLL3:range=chr3:9851691-98771735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80chr3:9850318-9870762"	NA	inter
CUST_5530_PI429285431	1.4825457	A	1.272444	A	1.15676972527841	0	lncRNA	5461-1_{1..309}	"transcript_id ""ENST00000566607.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566607.1"" | genecode_v17"	chr16	 49370594	 49370902	+	ENSG00000259839.1	ENST00000566607.1	RP11-491F9.6	RP11-491F9.6-001	NA	NA	NA	inter
CUST_21286_PI429285431	2.166442	A	2.0996253	A	1.04740304202696	0	lncRNA	22911-1_{1..589}	lnc-NPVF-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-NPVF-5:1	chr7	 25790406	 25790994	-	lnc-NPVF-5	lnc-NPVF-5:1	ENSG00000223561.2	AC003090.1	NA	NA	NA	inter
CUST_381_PI429201921	0.88845676	A	0.88529754	A	1.00219220380857	0	lncRNA	244-3_{6001..9000}	TC08002162.hg.1	TCONS_l2_00028034-XLOC_l2_014388 // Broad TUCP // linc-ZNF517 chr8:+:145925736-145934941 // chr8 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00028035-XLOC_l2_014388 // Broad TUCP // linc-ZNF517 chr8:+:145926088-145934575 // chr8 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00028036-XLOC_l2_014388 // Broad TUCP // linc-ZNF517 chr8:+:145931394-145932554 // chr8 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr8:+:145925736-145934941	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00028034-XLOC_l2_014388	linc-ZNF517	chr8	145925736	145934941	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37651_PI429285431	2.480129	A	2.8799539	A	0.7579502701512	0	lncRNA	38743-1_{1..332}	n346129|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1679|NULL|-1.2962200|-0.2749430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346129|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1679|NULL|-1.2962200|-0.2749430	chr9	 40501700	 40502031	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12728_PI429285431	0.91113997	A	0.91103095	A	1.00007556976088	0	lncRNA	14348-1_{1..3000}	lnc-CASP10-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CASP10-1:2	chr2	202042171	202045170	+	lnc-CASP10-1	lnc-CASP10-1:2	XLOC_001809	linc-CASP10-1	CFLAR	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00chr2:202032171-202037411"	NA	inter
CUST_9487_PI429285431	0.9030056	A	0.9032215	A	0.999850360720791	0	lncRNA	10994-1_{1..279}	lnc-LPHN3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LPHN3-1:3	chr4	 62019254	 62019532	+	lnc-LPHN3-1	lnc-LPHN3-1:3	XLOC_003554	linc-LPHN3-1	NA	NA	NA	inter
CUST_33303_PI429285431	1.4545089	A	1.7268363	A	0.827982740600746	0	lncRNA	34886-1_{1..723}	n340019|BC029135|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2473|NULL|-0.8116060|-0.3177948	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340019|BC029135|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2473|NULL|-0.8116060|-0.3177948	chr10	 45431753	 45432475	+	NA	NA	NA	NA	TMEM72	NA	chr10:45421753-45430642	inter
CUST_811_PI429285431	1.6441301	A	0.91223294	A	1.66082165518682	0	lncRNA	804-1_{1..533}	"transcript_id ""ENST00000432612.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432612.1"" | genecode_v17"	chr2	 23249981	 23250513	-	ENSG00000232451.1	ENST00000432612.1	AC016768.1	AC016768.1-002	NA	NA	NA	inter
CUST_31715_PI429285431	0.9058669	A	0.9140692	A	0.994330730188373	0	lncRNA	33457-2_{3001..3814}	n338243|BC044788|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|636|NULL|-0.9029630|-0.4234416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338243|BC044788|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|636|NULL|-0.9029630|-0.4234416	chr14	 30169404	 30170217	-	NA	NA	NA	NA	PRKD1	NA	chr14:30156404-30180138	inner
LNCA_21_P0013204	1.5293008	A	0.90229917	A	1.54435201103767	0	lncRNA	TCONS_l2_00025910	NA	NA	NA	NA	XLOC_l2_013427	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013427), lincRNA [TCONS_l2_00025910]"	chr7:62838136-62838328	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025910	TCONS_l2_00025910	chr7	 62838136	 62838328	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26757_PI429285431	0.92673475	A	0.8917648	A	1.02453548268642	0	lncRNA	28255-1_{1..560}	n323807|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058407|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058407|-1.2241400|-0.4160017	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323807|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058407|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058407|-1.2241400|-0.4160017	chrX	134214189	134214748	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16665_PI429285431	0.9236077	A	0.9272578	A	0.997473141371724	0	lncRNA	18368-1_{1..1228}	lnc-ZDHHC2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZDHHC2-1:2	chr8	 16995843	 16997070	+	lnc-ZDHHC2-1	lnc-ZDHHC2-1:2	XLOC_006725	linc-ZDHHC2	NA	NA	NA	inter
CUST_29004_PI429285431	0.8956715	A	0.9049636	A	0.993579904530386	0	lncRNA	30728-1_{1..432}	n326488|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030278|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030278|-1.0487200|-0.4782355	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326488|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030278|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030278|-1.0487200|-0.4782355	chr1	108415626	108416057	+	NA	NA	NA	NA	VAV3	NA	chr1:108405626-108428664	inner
LNCA_21_P0002225	2.0547817	A	1.6381391	A	1.33481758690151	0	lncRNA	TCONS_00003709	NA	NA	NA	NA	XLOC_001496	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001496), lincRNA [TCONS_00003709]"	chr2:64518631-64518690	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00003709	TCONS_00003709	chr2	 64518631	 64518690	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23991_PI429285431	0.8882369	A	0.8887974	A	0.999611566465143	0	lncRNA	25546-1_{1..563}	lnc-SPACA3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPACA3-2:1	chr17	 31868304	 31868866	+	lnc-SPACA3-2	lnc-SPACA3-2:1	ENSG00000265697.1	RP11-31I22.4	ACCN1	NA	chr17:31858304-31878358	inner
CUST_19001_PI429285431	2.1249142	A	2.2636864	A	0.908291824704495	0	lncRNA	20691-1_{1..578}	lnc-COLEC10-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COLEC10-1:2	chr8	120255657	120256234	+	lnc-COLEC10-1	lnc-COLEC10-1:2	ENSG00000147676	MAL2	MAL2	NA	chr8:120245657-120257913	inner
CUST_21599_PI429285431	5.802967	P	5.5936894	P	1.15610914096647	0	lncRNA	23212-1_{1..527}	lnc-RBM48-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBM48-1:4	chr7	 92546151	 92546677	+	lnc-RBM48-1	lnc-RBM48-1:4	ENSG00000237819.1	AC002454.1	NA	NA	NA	inter
CUST_16203_PI429285431	1.9290892	A	0.917011	A	2.01681422644567	0	lncRNA	17909-1_{1..910}	lnc-ABI3-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABI3-2:4	chr17	 47330216	 47331125	+	lnc-ABI3-2	lnc-ABI3-2:4	XLOC_012230	linc-NGFR-3	NA	NA	NA	inter
LNCA_21_P0004017	0.91667306	A	0.90706515	A	1.0066819208112	0	lncRNA	ENST00000507323	NA	NA	NA	NA	XLOC_004428	NA	ENST00000507323	NA	NA	"BROAD Institute lincRNA (XLOC_004428), lincRNA [TCONS_00009425]"	chr5:73407999-73408058	hs|5q13.3	Agilent_HUMAN_G3V2	ENST00000507323	ENST00000507323	chr5	 73407999	 73408058	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11080_PI429285431	0.9099068	A	0.97133064	A	0.958317859157578	0	lncRNA	12632-1_{1..335}	lnc-GNAO1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNAO1-1:5	chr16	 56170559	 56170893	+	lnc-GNAO1-1	lnc-GNAO1-1:5	XLOC_011734	linc-GNAO1-1	NA	NA	NA	inter
CUST_1859_PI429285431	11.147991	P	10.793093	P	1.27889515889848	0	lncRNA	1849-1_{1..327}	"transcript_id ""ENST00000602520.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602520.1"" | genecode_v17"	chr4	119199864	119200190	+	ENSG00000269893.1	ENST00000602520.1	SNHG8	SNHG8-002	PRSS12	NA	chr4:119201193-119210978	inter
CUST_46266_PI429285431	9.1261215	P	8.784123	P	1.26751120417601	0	lncRNA	50505-1_{1..2528}	"gi|338968902|ref|NR_040104.1| Homo sapiens carbohydrate kinase domain containing (CARKD), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|338968902|ref|NR_040104.1| Homo sapiens carbohydrate kinase domain containing (CARKD), transcript variant 6, non-coding RNA"	Chr13	111267807	111270334	+	55739	NR_040104.1	NA	NA	NA	NA	NA	inter
CUST_19633_PI429285431	1.5202533	A	0.89161956	A	1.54610011342104	0	lncRNA	21289-1_{1..294}	lnc-AC040934.1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC040934.1-3:4	chr17	 45713878	 45714171	-	lnc-AC040934.1-3	lnc-AC040934.1-3:4	ENSG00000263766.1	RP11-580I16.2	NA	"hg19_refFlat_NPEPPS:range=chr17:45608667-456992865'pad=0,hg19_refFlat_NPEPPS:range=chr17:45608667-456992865'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70"	NA	inter
CUST_2754_PI429285431	3.5809407	P	3.8235643	P	0.845206870627395	0	lncRNA	2737-2_{3001..3251}	"transcript_id ""ENST00000444210.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444210.2"" | genecode_v17"	chr7	  5518435	  5518685	+	ENSG00000230733.2	ENST00000444210.2	AC092171.4	AC092171.4-001	FBXL18	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00chr7:5515428-5529442"	NA	inner
LNCA_21_P0003302	4.993629	P	4.676592	P	1.24576936471612	0	lncRNA	TCONS_00007282	NA	NA	NA	NA	XLOC_003284	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003284), lincRNA [TCONS_00007282]"	chr3:150456436-150456377	hs|3q25.1	Agilent_HUMAN_G3V2	TCONS_00007282	TCONS_00007282	chr3	150456377	150456436	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16295_PI429285431	2.5505087	A	2.178338	A	1.29429878714539	0	lncRNA	18001-1_{1..503}	lnc-USP10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP10-1:1	chr16	 84828876	 84829378	+	lnc-USP10-1	lnc-USP10-1:1	XLOC_011805	linc-CRISPLD2	NA	NA	NA	inter
CUST_8454_PI429285431	0.8895153	A	0.89946705	A	0.993125709326893	0	lncRNA	10022-1_{1..648}	lnc-NRG2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NRG2-1:7	chr5	139485881	139486528	-	lnc-NRG2-1	lnc-NRG2-1:7	ENSG00000245146	CTB-131B5.4	PURA	NA	chr5:139493708-139496067	inter
CUST_6870_PI429285431	0.9136007	A	0.9135901	A	1.00000734738711	0	lncRNA	6820-1_{1..1412}	"transcript_id ""ENST00000417335.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417335.1"" | genecode_v17"	chr21	 40360633	 40362044	-	ENSG00000235888.1	ENST00000417335.1	AF064858.8	AF064858.8-001	NA	NA	NA	inter
CUST_37355_PI429285431	8.787223	P	8.369565	P	1.33575739110263	0	lncRNA	38459-1_{1..1312}	n345800|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1349|NULL|-1.3025000|-0.2336215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n345800|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1349|NULL|-1.3025000|-0.2336215	chr15	 40616695	 40618006	+	NA	NA	NA	NA	C15orf52	NA	chr15:40623653-40628913	inter
CUST_20174_PI429285431	1.4146154	A	1.3712773	A	1.03049542508217	0	lncRNA	21819-1_{1..3000}	lnc-TNP1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TNP1-4:1	chr2	217736038	217739037	-	lnc-TNP1-4	lnc-TNP1-4:1	ENSG00000236295.1	AC007563.1	NA	NA	NA	inter
CUST_47688_PI429285431	1.0087492	A	0.938588	A	1.04983398061139	0	lncRNA	51664-1_{1..3000}	"gi|385137062|ref|NR_047600.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 30, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137062|ref|NR_047600.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 30, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047600.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004752	1.0761073	A	0.92499995	A	1.11042145629326	0	lncRNA	ENST00000431394	NA	NA	NA	NA	XLOC_005741	NA	ENST00000431394	THC2746682	NA	"BROAD Institute lincRNA (XLOC_005741), lincRNA [TCONS_00011500]"	chr6:50564326-50562993	hs|6p12.3	Agilent_HUMAN_G3V2	ENST00000431394	ENST00000431394	chr6	 50562993	 50564326	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48065_PI429285431	4.3685985	P	4.0116243	P	1.28073695745333	0	lncRNA	51941-1_{1..472}	"gi|397138161|ref|XR_112377.2| PREDICTED: Homo sapiens uncharacterized LOC100506797, transcript variant 1 (LOC100506797), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138161|ref|XR_112377.2| PREDICTED: Homo sapiens uncharacterized LOC100506797, transcript variant 1 (LOC100506797), misc_RNA"	NA	NA	NA	NA	NA	XR_112377.2	NA	NA	NA	NA	NA	Unknown
CUST_12653_PI429285431	1.5377458	A	2.8632362	A	0.399013537690382	0	lncRNA	14267-2_{3001..4212}	lnc-WDR91-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR91-1:1	chr7	134953918	134955129	-	lnc-WDR91-1	lnc-WDR91-1:1	XLOC_006617	linc-WDR91	STRA8	NA	chr7:134940918-134943244	inter
CUST_1510_PI429285431	2.3128166	A	3.124001	A	0.569913787396712	0	lncRNA	1497-1_{1..423}	"transcript_id ""ENST00000490497.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000490497.1"" | genecode_v17"	chr3	154958737	154959159	+	ENSG00000241336.1	ENST00000490497.1	RP11-451G4.1	RP11-451G4.1-002	NA	NA	NA	inter
CUST_45516_PI429285431	1.0713878	A	1.2674137	A	0.872951919313303	0	lncRNA	49925-1_{1..2403}	"gi|217330620|ref|NR_024577.1| Homo sapiens Sec61 alpha 2 subunit (S. cerevisiae) (SEC61A2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|217330620|ref|NR_024577.1| Homo sapiens Sec61 alpha 2 subunit (S. cerevisiae) (SEC61A2), transcript variant 4, non-coding RNA"	Chr10	 12171640	 12174042	+	55176	NR_024577.1	NA	NA	NA	"hg19_refFlat_NUDT5:range=chr10:12209701-122282905'pad=0,hg19_refFlat_NUDT5:range=chr10:12209701-122282905'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30"	NA	inter
LNCA_21_P0014526	0.9178036	A	0.92458755	A	0.995308762574734	0	lncRNA	ENST00000433684	XR_110211	XR_110211	NA	NA	LOC100506430	NA	ENST00000433684	THC2661027	NA	"PREDICTED: Homo sapiens hypothetical LOC100506430 (LOC100506430), miscRNA [XR_110211]"	chr6:112627741-112627800	hs|6q21	Agilent_HUMAN_G3V2	ENST00000433684	ENST00000433684	chr6	112627741	112627800	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13095_PI429285431	10.617974	P	10.530765	P	1.0623130702644	0	lncRNA	14719-1_{1..500}	lnc-CDC42-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDC42-1:2	chr1	 22584152	 22584651	+	lnc-CDC42-1	lnc-CDC42-1:2	XLOC_000090	linc-ZBTB40	NA	NA	NA	inter
CUST_44168_PI429285431	1.0905669	A	1.2566582	A	0.891254091687426	0	lncRNA	48827-1_{1..982}	"gi|333360864|ref|NR_038213.1| Homo sapiens IQ motif containing F5 pseudogene (IQCF4), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333360864|ref|NR_038213.1| Homo sapiens IQ motif containing F5 pseudogene (IQCF4), transcript variant 1, non-coding RNA"	Chr3	 51851619	 51852600	+	100506840	NR_038213.1	NA	NA	NA	NA	NA	inter
CUST_31586_PI429285431	2.9821646	A	2.2037199	A	1.71528071429272	0	lncRNA	33343-1_{1..1109}	n338091|AL109726|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|478|NULL|-0.8756390|-0.2747130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338091|AL109726|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|478|NULL|-0.8756390|-0.2747130	chr15	 85545792	 85546900	+	NA	NA	NA	NA	PDE8A	NA	chr15:85535792-85556870	inner
CUST_6789_PI429285431	1.0191647	A	1.2997916	A	0.82323321673912	0	lncRNA	6737-1_{1..879}	"transcript_id ""ENST00000416002.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416002.1"" | genecode_v17"	chr21	 19986749	 19987627	+	ENSG00000230233.1	ENST00000416002.1	AF240627.2	AF240627.2-001	NA	NA	NA	inter
CUST_24404_PI429285431	1.6987511	A	0.91031665	A	1.7271991637856	0	lncRNA	25957-1_{1..358}	lnc-ZFP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZFP2-1:1	chr5	178366117	178366474	+	lnc-ZFP2-1	lnc-ZFP2-1:1	ENSG00000253718.1	RP11-281O15.3	ZNF454	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr5:178368194-178376360"	NA	inter
CUST_12655_PI429285431	1.1217564	A	1.8863844	A	0.588605121316441	0	lncRNA	14269-1_{1..1276}	lnc-SEPT7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SEPT7-1:2	chr7	 35758680	 35759955	+	lnc-SEPT7-1	lnc-SEPT7-1:2	XLOC_006043	linc-SEPT7-1	NA	NA	NA	inter
LNCA_19_P00316624	1.3074032	A	4.591471	P	0.102659012981435	0	lncRNA	ENST00000514050	NA	NA	NA	NA	XLOC_l2_011173	NA	ENST00000514050	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011173), lincRNA [TCONS_l2_00021909]"	chr4:82524040-82523981	hs|4q21.22	Agilent_HUMAN_G3V2	ENST00000514050	ENST00000514050	chr4	 82523981	 82524040	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12716_PI429285431	0.8966062	A	0.8964591	A	1.00010196714856	0	lncRNA	14335-1_{1..614}	lnc-MRPL32-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPL32-2:1	chr7	 41975987	 41976600	+	lnc-MRPL32-2	lnc-MRPL32-2:1	XLOC_006062	linc-MRPL32-2	NA	NA	NA	inter
CUST_8768_PI429285431	0.89176023	A	0.892517	A	0.999475584562036	0	lncRNA	10311-1_{1..240}	lnc-PEX2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PEX2-1:2	chr8	 77595287	 77595526	-	lnc-PEX2-1	lnc-PEX2-1:2	ENSG00000253661	RP11-65D13.1	ZFHX4	NA	chr8:77593515-77605391	inner
CUST_39414_PI429285431	4.006494	P	3.9368405	P	1.0494645976694	0	lncRNA	40374-1_{1..850}	n386684|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010rpo.1||2.2478900|-0.1109276	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386684|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010rpo.1||2.2478900|-0.1109276	chr11	 67085309	 67086158	+	NA	NA	NA	NA	CLCF1	NA	chr11:67131639-67141648	inter
CUST_18662_PI429285431	3.018706	P	3.4087508	P	0.763105907389422	0	lncRNA	20364-1_{1..382}	lnc-MSN-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MSN-1:3	chrX	 64813133	 64813514	+	lnc-MSN-1	lnc-MSN-1:3	ENSG00000231669	RP11-368D24__A.1	NA	NA	NA	inter
CUST_29065_PI429285431	1.6215929	A	1.4508536	A	1.12563516157793	0	lncRNA	30793-1_{1..349}	n326555|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001249|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001249|-1.3381200|-0.4487619	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326555|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001249|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001249|-1.3381200|-0.4487619	chr1	 80773250	 80773598	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34528_PI429285431	0.89900917	A	0.8969469	A	1.00143047879618	0	lncRNA	35991-1_{1..3000}	n341408|BC040270|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3878|NULL|-0.8827460|-0.3101365	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341408|BC040270|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3878|NULL|-0.8827460|-0.3101365	chr8	  9907994	  9910993	-	NA	NA	NA	NA	MSRA	"hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50chr8:9911830-9921764"	NA	inter
CUST_9899_PI429285431	1.2655803	A	2.2383516	A	0.50952636343216	0	lncRNA	11423-1_{1..285}	lnc-DDX39A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DDX39A-2:1	chr19	 14436120	 14436404	-	lnc-DDX39A-2	lnc-DDX39A-2:1	XLOC_013240	linc-LPHN1	NA	NA	NA	inter
CUST_26460_PI429285431	2.2299678	A	2.563498	A	0.793592226924372	0	lncRNA	27968-1_{1..551}	lnc-HPS3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HPS3-3:1	chr3	149051291	149051841	+	lnc-HPS3-3	lnc-HPS3-3:1	ENSG00000244468.1	RP11-206M11.7	TM4SF18	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00chr3:149041291-149051548"	NA	inner
CUST_18709_PI429285431	1.147262	A	0.8986206	A	1.18808775419567	0	lncRNA	20407-1_{1..646}	lnc-EHD3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-EHD3-3:1	chr2	 31788144	 31788789	+	lnc-EHD3-3	lnc-EHD3-3:1	ENSG00000228563	AL133247.2	SRD5A2	NA	chr2:31778144-31798534	inner
CUST_14421_PI429285431	1.0883908	A	0.9165437	A	1.12649983323548	0	lncRNA	16082-1_{1..305}	lnc-NDUFS6-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDUFS6-7:1	chr5	  2069258	  2069562	+	lnc-NDUFS6-7	lnc-NDUFS6-7:1	XLOC_004252	linc-C5orf38-4	NA	NA	NA	inter
CUST_49123_PI429285431	3.9980996	P	4.352561	P	0.782161592289621	0	lncRNA	52948-1_{1..656}	hg19_lincRNAsTranscripts_TCONS_l2_00021172 range=chr4:71764944-71767830 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021172 range=chr4:71764944-71767830 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 71764944	 71765599	-	NA	NA	NA	NA	MOBKL1A	NA	chr4:71768064-71777830	inter
CUST_41359_PI429285431	0.9156011	A	1.2845683	A	0.774336632372614	0	lncRNA	42432-1_{1..106}	ENST00000584757 ncrna:miRNA chromosome:GRCh37:4:44450022:44450127:1 gene:ENSG00000266496 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584757 ncrna:miRNA chromosome:GRCh37:4:44450022:44450127:1 gene:ENSG00000266496 gene_biotype:miRNA transcript_biotype:miRNA	chr4	 44450022	 44450127	+	ENSG00000266496	ENST00000584757	NA	NA	KCTD8	"hg19_refFlat_KCTD8:range=chr4:44176807-444505405'pad=0,hg19_refFlat_KCTD8:range=chr4:44176807-444505405'pad=0 3'pad=0 strand=- repeatMasking=none,-94.50chr4:44440022-44450824"	NA	inner
CUST_17326_PI429285431	16.479858	P	16.528196	P	0.967049739035298	0	lncRNA	19044-1_{1..1295}	lnc-ELFN1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELFN1-1:2	chr7	  1682027	  1683321	+	lnc-ELFN1-1	lnc-ELFN1-1:2	XLOC_005965	linc-ELFN1	NA	NA	NA	inter
CUST_44761_PI429285431	4.8475666	P	4.9320045	P	0.943151933339703	0	lncRNA	49305-2_{3001..4077}	"gi|393715083|ref|NR_072997.1| Homo sapiens PTK7 protein tyrosine kinase 7 (PTK7), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393715083|ref|NR_072997.1| Homo sapiens PTK7 protein tyrosine kinase 7 (PTK7), transcript variant 7, non-coding RNA"	Chr6	 43047006	 43048082	+	5754	NR_072997.1	NA	NA	NA	NA	NA	inter
CUST_31081_PI429285431	9.047176	P	9.894636	P	0.555762346957305	0	lncRNA	32872-1_{1..231}	n337334|DQ426869|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391912|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391912|1.3090600|-0.0403522	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337334|DQ426869|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391912|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391912|1.3090600|-0.0403522	chr1	 12640652	 12640882	-	NA	NA	NA	NA	DHRS3	NA	chr1:12630652-12677820	inner
CUST_16208_PI429285431	0.8906601	A	0.89026856	A	1.00027143167799	0	lncRNA	17914-1_{1..594}	lnc-AC018682.6.1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC018682.6.1-1:7	chr2	 46668698	 46669291	+	lnc-AC018682.6.1-1	lnc-AC018682.6.1-1:7	XLOC_001455	linc-LOC388946	NA	NA	NA	inter
CUST_31800_PI429285431	7.677502	P	7.7368336	P	0.959708648951769	0	lncRNA	33538-1_{1..1808}	n338342|BC034771|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|736|NULL|5.6244700|-0.1117657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338342|BC034771|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|736|NULL|5.6244700|-0.1117657	chr19	 15489886	 15491693	+	NA	NA	NA	NA	AKAP8	"hg19_refFlat_AKAP8L:range=chr19:15490933-155297345'pad=0,hg19_refFlat_AKAP8L:range=chr19:15490933-155297345'pad=0 3'pad=0 strand=- repeatMasking=none,-110.10chr19:15479886-15490612"	NA	inner
LNCA_21_P0013768	6.1494265	P	5.608001	P	1.45540987037785	0	lncRNA	TCONS_l2_00030232	NA	NA	NA	NA	XLOC_l2_015542	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015542), lincRNA [TCONS_l2_00030232]"	chrX:61999118-61999775	hs|Xq11.1	Agilent_HUMAN_G3V2	TCONS_l2_00030232	TCONS_l2_00030232	chrX	 61999118	 61999775	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16458_PI429285431	3.1084056	P	2.4732068	A	1.55315175593379	0	lncRNA	18156-1_{1..344}	lnc-SLITRK5-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SLITRK5-3:1	chr13	 88456029	 88456372	+	lnc-SLITRK5-3	lnc-SLITRK5-3:1	XLOC_010464	linc-GPC5-7	NA	NA	NA	inter
CUST_8251_PI429285431	4.785657	P	4.9926047	P	0.86636826306441	0	lncRNA	9841-1_{1..522}	lnc-AMIGO2-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AMIGO2-1:10	chr12	 47604423	 47604944	-	lnc-AMIGO2-1	lnc-AMIGO2-1:10	ENSG00000247774	RP11-493L12.2	FAM113B	NA	chr12:47610052-47614520	inter
CUST_36466_PI429285431	4.781652	P	4.5754547	P	1.15364336416088	0	lncRNA	37674-1_{1..761}	n344974|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_523|NULL|-1.3987300|-0.2253327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344974|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_523|NULL|-1.3987300|-0.2253327	chr7	129402906	129403666	-	NA	NA	NA	NA	NRF1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00chr7:129392906-129396922"	NA	inter
CUST_27483_PI429285431	1.9637583	A	2.791564	A	0.563385485049903	0	lncRNA	29053-1_{1..572}	n324659|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320530|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320530|-1.4612100|-0.3045789	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324659|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320530|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320530|-1.4612100|-0.3045789	chr22	 41163972	 41164543	+	NA	NA	NA	NA	SLC25A17	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20chr22:41165636-41182145"	NA	inner
CUST_25104_PI429285431	4.0605583	P	4.781474	P	0.606712230684126	0	lncRNA	26641-1_{1..358}	lnc-SMARCAL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMARCAL1-2:1	chr2	217393993	217394350	+	lnc-SMARCAL1-2	lnc-SMARCAL1-2:1	ENSG00000241836.1	AC073321.5	NA	NA	NA	inter
CUST_22527_PI429285431	4.7696767	P	4.416395	P	1.27746317174231	0	lncRNA	24115-1_{1..708}	lnc-NEBL-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NEBL-2:2	chr10	 20017334	 20018041	-	lnc-NEBL-2	lnc-NEBL-2:2	ENSG00000233968.1	RP11-354E11.2	C10orf112	NA	chr10:20007334-20023407	inter
CUST_10972_PI429285431	7.0302706	P	7.053604	P	0.983956608039661	0	lncRNA	12514-1_{1..205}	lnc-LBR-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LBR-1:3	chr1	225649243	225649447	-	lnc-LBR-1	lnc-LBR-1:3	XLOC_001230	linc-LBR	NA	NA	NA	inter
LNCA_21_P0008953	1.8672819	A	2.429481	A	0.677269015373608	0	lncRNA	TCONS_00024429	NA	NA	NA	NA	XLOC_011746	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011746), lincRNA [TCONS_00024429]"	chr16:61501465-61502786	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024429	TCONS_00024429	chr16	 61501465	 61502786	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11772_PI429285431	3.3044055	P	3.1404335	A	1.12036746975569	0	lncRNA	13350-1_{1..286}	lnc-FANCF-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FANCF-1:2	chr11	 22513461	 22513746	-	lnc-FANCF-1	lnc-FANCF-1:2	XLOC_009392	linc-DBX1-2	NA	NA	NA	inter
CUST_38734_PI429285431	0.89067125	A	0.88540626	A	1.00365608018971	0	lncRNA	39728-1_{1..3000}	n384244|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003cjz.2||-1.2424300|-0.3184514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384244|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003cjz.2||-1.2424300|-0.3184514	chr3	 39563760	 39566759	+	NA	NA	NA	NA	MOBP	NA	chr3:39553760-39567859	inter
CUST_42367_PI429285431	0.89005333	A	0.88793314	A	1.00147068411749	0	lncRNA	45043-1_{1..75}	ENST00000364840 ncrna:snoRNA chromosome:GRCh37:14:101446329:101446403:1 gene:ENSG00000201710 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364840 ncrna:snoRNA chromosome:GRCh37:14:101446329:101446403:1 gene:ENSG00000201710 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101446329	101446403	+	ENSG00000201710	ENST00000364840	NA	NA	NA	NA	NA	inter
CUST_6875_PI429285431	1.1830729	A	1.1049538	A	1.05564086123626	0	lncRNA	6826-1_{1..575}	"transcript_id ""ENST00000413718.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000413718.1"" | genecode_v17"	chr21	 43099341	 43099915	+	ENSG00000227702.1	ENST00000413718.1	LINC00111	LINC00111-001	NA	NA	NA	inter
CUST_37402_PI429285431	4.385379	P	5.024952	P	0.641902907140961	0	lncRNA	38508-2_{3001..5222}	n345856|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1405|NULL|-1.4008000|-0.1998673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345856|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1405|NULL|-1.4008000|-0.1998673	chr9	125877492	125879713	-	NA	NA	NA	NA	RABGAP1	NA	chr9:125864492-125867147	inter
CUST_34405_PI429285431	1.1464689	A	0.8971336	A	1.18865933194583	0	lncRNA	35887-1_{1..1598}	n341275|BC037849|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3744|NULL|-1.1301100|-0.3331480	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341275|BC037849|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3744|NULL|-1.1301100|-0.3331480	chr7	 94924143	 94925740	+	NA	NA	NA	NA	PPP1R9A	NA	chr7:94914143-94925727	inner
CUST_44373_PI429285431	1.0448152	A	0.9185031	A	1.09149997705421	0	lncRNA	48993-1_{1..1973}	"gi|387157904|ref|NR_046827.1| Homo sapiens LNX1 antisense RNA 2 (LNX1-AS2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|387157904|ref|NR_046827.1| Homo sapiens LNX1 antisense RNA 2 (LNX1-AS2), non-coding RNA"	Chr4	 54459123	 54461095	+	100873955	NR_046827.1	NA	NA	NA	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60"	NA	inter
CUST_46717_PI429285431	0.8989132	A	0.9034651	A	0.996849835561741	0	lncRNA	50873-2_{3001..3864}	"gi|254281195|ref|NR_028076.1| Homo sapiens scavenger receptor class F, member 1 (SCARF1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254281195|ref|NR_028076.1| Homo sapiens scavenger receptor class F, member 1 (SCARF1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_028076.1	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-58.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40"	NA	Unknown
CUST_25254_PI429285431	1.0155438	A	2.117642	A	0.465838505318926	0	lncRNA	26784-1_{1..731}	lnc-C7orf11-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C7orf11-4:1	chr7	 39742579	 39743309	-	lnc-C7orf11-4	lnc-C7orf11-4:1	ENSG00000228554.1	AC004837.5	RALA	NA	chr7:39732579-39747723	inner
CUST_164_PI429285431	5.356719	P	5.489254	P	0.912227141208062	0	lncRNA	155-1_{1..3000}	"transcript_id ""ENST00000457898.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457898.1"" | genecode_v17"	chr1	 16787443	 16790442	+	ENSG00000226029.1	ENST00000457898.1	RP4-798A10.2	RP4-798A10.2-001	NECAP2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-24.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90chr1:16777443-16786585"	NA	inter
CUST_12092_PI429285431	6.134571	P	6.4978023	P	0.777421385851303	0	lncRNA	13686-1_{1..237}	lnc-FAM120B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM120B-3:1	chr6	170488062	170488298	+	lnc-FAM120B-3	lnc-FAM120B-3:1	XLOC_005563	linc-FAM120B-2	NA	NA	NA	inter
CUST_29765_PI429285431	1.037385	A	1.7762572	A	0.599207588649411	0	lncRNA	31527-1_{1..433}	n333455|BC020697|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090213|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090213|1.2264000|-0.3385279	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333455|BC020697|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090213|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090213|1.2264000|-0.3385279	chr17	 41561328	 41561760	+	NA	NA	NA	NA	DHX8	NA	chr17:41553522-41578584	inner
CUST_18649_PI429285431	1.7397034	A	0.9165161	A	1.76931055909171	0	lncRNA	20353-1_{1..3000}	lnc-MAGEA8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAGEA8-2:1	chrX	149392576	149395575	+	lnc-MAGEA8-2	lnc-MAGEA8-2:1	ENSG00000235703	RP13-507I23.1	NA	NA	NA	inter
CUST_10484_PI429285431	0.9034318	A	1.0785794	A	0.885676902170528	0	lncRNA	12012-1_{1..255}	lnc-FSCB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FSCB-1:1	chr14	 44949713	 44949967	-	lnc-FSCB-1	lnc-FSCB-1:1	XLOC_011007	linc-FBXO33-3	NA	NA	NA	inter
CUST_32002_PI429285431	2.621952	A	3.1280909	A	0.704104320335887	0	lncRNA	33724-1_{1..2854}	n338563|AK095015|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|968|NULL|-1.0552400|-0.2610133	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338563|AK095015|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|968|NULL|-1.0552400|-0.2610133	chr1	234666767	234669620	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45288_PI429285431	0.9014185	A	1.0957788	A	0.873960329488687	0	lncRNA	49736-1_{1..1752}	"gi|397139301|ref|XR_159063.1| PREDICTED: Homo sapiens uncharacterized LOC100129596 (LOC100129596), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139301|ref|XR_159063.1| PREDICTED: Homo sapiens uncharacterized LOC100129596 (LOC100129596), misc_RNA"	NA	NA	NA	NA	NA	XR_159063.1	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-14.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20"	NA	Unknown
CUST_23071_PI429285431	0.89896035	A	0.89929664	A	0.999766928699986	0	lncRNA	24642-1_{1..602}	lnc-PPIAL4G-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>lnc-PPIAL4G-5:3	chr1	143240289	143240890	-	lnc-PPIAL4G-5	lnc-PPIAL4G-5:3	ENSG00000225278.1	BX571672.5	NA	NA	NA	inter
CUST_43603_PI429285431	2.1529925	A	1.3775885	A	1.71166930551523	0	lncRNA	48366-1_{1..1205}	"gi|374088100|ref|NR_046135.1| Homo sapiens family with sequence similarity 91, member A2 (FAM91A2), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|374088100|ref|NR_046135.1| Homo sapiens family with sequence similarity 91, member A2 (FAM91A2), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NR_046135.1	NA	NA	NA	NA	NA	Unknown
CUST_35431_PI429285431	10.86265	P	10.689822	P	1.12726600999765	0	lncRNA	36838-1_{1..766}	n342493|CR594333|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4987|NULL|0.3877360|-0.3565795	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342493|CR594333|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4987|NULL|0.3877360|-0.3565795	chr16	 81009698	 81010463	-	NA	NA	NA	NA	C16orf61	NA	chr16:81009699-81040502	inner
CUST_36456_PI429285431	0.90627736	A	0.90678495	A	0.999648227309146	0	lncRNA	37666-1_{1..712}	n344966|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_515|NULL|-1.4447700|-0.3810856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344966|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_515|NULL|-1.4447700|-0.3810856	chr7	108177629	108178340	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_449_PI429285431	2.5556822	A	3.7127118	P	0.448434879128007	0	lncRNA	441-1_{1..423}	"transcript_id ""ENST00000596960.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596960.1"" | genecode_v17"	chr1	149575345	149575767	+	ENSG00000268544.1	ENST00000596960.1	RP11-277L2.4	RP11-277L2.4-001	LOC642441	NA	chr1:149576642-149577448	inter
CUST_37204_PI429285431	0.9038376	A	0.89916974	A	1.00324075392342	0	lncRNA	38316-1_{1..1763}	n345638|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1187|NULL|-1.2880200|-0.3509349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345638|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1187|NULL|-1.2880200|-0.3509349	chr4	 74140714	 74142476	+	NA	NA	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.11;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80"	NA	inter
LNCA_21_P0014731	2.8616261	A	3.3652568	P	0.70532950685651	0	lncRNA	XR_113052	XR_113052	XR_113052	NA	NA	LOC100508633	uncharacterized LOC100508633	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100508633 (LOC100508633), miscRNA [XR_113052]"	NA	NA	Agilent_HUMAN_G3V2	XR_113052	XR_113052	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18528_PI429285431	4.4811687	P	4.8583293	P	0.769951458902194	0	lncRNA	20242-1_{1..1016}	lnc-FRMD1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FRMD1-2:3	chr6	168376604	168377619	-	lnc-FRMD1-2	lnc-FRMD1-2:3	ENSG00000235994	RP3-470B24.5	MLLT4	NA	chr6:168366604-168372700	inner
CUST_21328_PI429285431	0.91285735	A	1.1140287	A	0.869844034527953	0	lncRNA	22951-1_{1..642}	lnc-AC021860.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC021860.1-2:2	chr4	 38666415	 38667056	-	lnc-AC021860.1-2	lnc-AC021860.1-2:2	ENSG00000231160.3	RP11-617D20.1	KLF3	NA	chr4:38665790-38676476	inner
CUST_36086_PI429285431	4.258037	P	4.3804483	P	0.918650946625875	0	lncRNA	37388-3_{6001..7968}	n344672|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_221|NULL|-1.2987500|-0.2786196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344672|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_221|NULL|-1.2987500|-0.2786196	chr8	 29362099	 29364066	-	NA	NA	NA	NA	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_34128_PI429285431	1.049156	A	2.114097	A	0.47799220621522	0	lncRNA	35649-1_{1..2355}	n340964|AL133075|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3430|NULL|-0.7152730|-0.3283120	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340964|AL133075|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3430|NULL|-0.7152730|-0.3283120	chr11	  8097087	  8099441	-	NA	NA	NA	NA	TUB	NA	chr11:8087087-8109328	inner
CUST_14930_PI429285431	1.9067631	A	3.4251938	P	0.349065408099956	0	lncRNA	16593-1_{1..391}	lnc-CDH19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH19-1:1	chr18	 63921942	 63922332	-	lnc-CDH19-1	lnc-CDH19-1:1	XLOC_012868	linc-SERPINB3-1	NA	NA	NA	inter
CUST_46086_PI429285431	4.2806296	P	3.6438298	P	1.55487628961875	0	lncRNA	50354-1_{1..3000}	"gi|342672085|ref|NR_040718.1| Homo sapiens Ras association (RalGDS/AF-6) domain family member 3 (RASSF3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|342672085|ref|NR_040718.1| Homo sapiens Ras association (RalGDS/AF-6) domain family member 3 (RASSF3), transcript variant 2, non-coding RNA"	Chr12	 65004293	 65007292	+	283349	NR_040718.1	NA	NA	NA	NA	NA	inter
CUST_42008_PI429285431	3.635396	P	3.6449711	P	0.993385022363133	0	lncRNA	43852-1_{1..84}	ENST00000384877 ncrna:miRNA chromosome:GRCh37:9:20716104:20716187:1 gene:ENSG00000207609 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384877 ncrna:miRNA chromosome:GRCh37:9:20716104:20716187:1 gene:ENSG00000207609 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 20716104	 20716187	+	ENSG00000207609	ENST00000384877	NA	NA	KIAA1797	NA	chr9:20706104-20726187	inner
CUST_33991_PI429285431	1.1033671	A	1.4753268	A	0.77273213471566	0	lncRNA	35528-1_{1..2651}	n340804|AK056117|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3267|NULL|-1.0547700|-0.2485457	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340804|AK056117|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3267|NULL|-1.0547700|-0.2485457	chr17	 63802089	 63804739	-	NA	NA	NA	NA	CEP112	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70chr17:63792089-63814739"	NA	inner
CUST_35976_PI429285431	7.129884	P	7.2885494	P	0.895853418636249	0	lncRNA	37323-1_{1..3000}	n344598|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_146|NULL|-1.3254200|-0.3153904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344598|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_146|NULL|-1.3254200|-0.3153904	chr16	 72460771	 72463770	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6411_PI429285431	4.131084	P	4.004201	P	1.09193198841402	0	lncRNA	6349-1_{1..493}	"transcript_id ""ENST00000588150.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588150.1"" | genecode_v17"	chr19	 28213937	 28214429	-	ENSG00000261824.2	ENST00000588150.1	LINC00662	LINC00662-008	NA	NA	NA	inter
CUST_37049_PI429285431	4.269973	P	4.4230666	P	0.899319963656288	0	lncRNA	38186-1_{1..3000}	n345503|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1052|NULL|-1.5131900|-0.2775711	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345503|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1052|NULL|-1.5131900|-0.2775711	chr2	134883533	134886532	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60"	NA	inter
CUST_28744_PI429285431	0.9194508	A	1.124455	A	0.867536161561365	0	lncRNA	30447-1_{1..365}	n326141|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096172|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096172|-1.1959000|-0.4003733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326141|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096172|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096172|-1.1959000|-0.4003733	chr1	241321390	241321754	-	NA	NA	NA	NA	RGS7	NA	chr1:241311390-241332483	inner
CUST_19882_PI429285431	4.5081716	P	3.9618075	P	1.46040053257121	0	lncRNA	21538-1_{1..514}	lnc-ADA-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADA-1:5	chr20	 43324644	 43325157	-	lnc-ADA-1	lnc-ADA-1:5	ENSG00000244558.1	RP11-445H22.4	NA	NA	NA	inter
CUST_51930_PI429285431	0.8982662	A	0.91288877	A	0.989915598856565	0	lncRNA	55471-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00016459 range=chr20:5412637-5428042 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016459 range=chr20:5412637-5428042 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	  5412637	  5415636	-	NA	NA	NA	NA	NA	"hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-23.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60"	NA	inter
CUST_24720_PI429285431	1.8132803	A	2.2661693	A	0.730578397328053	0	lncRNA	26266-1_{1..744}	lnc-PDZD8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDZD8-1:1	chr10	119001396	119002139	-	lnc-PDZD8-1	lnc-PDZD8-1:1	ENSG00000225936.1	RP11-501J20.5	SLC18A2	"hg19_refFlat_SLC18A2:range=chr10:119001205-1190367775'pad=0,hg19_refFlat_SLC18A2:range=chr10:119001205-1190367775'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.30chr10:119000584-119011434"	NA	inner
CUST_51521_PI429285431	1.0765771	A	0.910508	A	1.12199721894987	0	lncRNA	55094-1_{1..606}	hg19_lincRNAsTranscripts_TCONS_l2_00010577 range=chr17:15721320-15767468 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010577 range=chr17:15721320-15767468 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 15721320	 15721925	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00319698	1.5861622	A	0.92381257	A	1.58265810525467	0	lncRNA	XR_109474	XR_109474	XR_109474	NA	Hs.586976	LOC100506821	uncharacterized LOC100506821	NA	THC2520453	NA	"PREDICTED: Homo sapiens hypothetical LOC100506821 (LOC100506821), miscRNA [XR_109474]"	chr18:34812018-34812077	hs|18q12.2	Agilent_HUMAN_G3V2	XR_109474	XR_109474	chr18	 34812018	 34812077	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9317_PI429285431	6.106455	P	4.899542	P	2.30843162362642	0	lncRNA	10825-1_{1..2950}	lnc-NAP1L2-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NAP1L2-1:8	chrX	 73070337	 73073286	-	lnc-NAP1L2-1	lnc-NAP1L2-1:8	XLOC_008185	linc-NAP1L2-4	NA	NA	NA	inter
CUST_19213_PI429285431	0.92497754	A	0.9600034	A	0.976014265772494	0	lncRNA	20883-1_{1..429}	lnc-SERPINE2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SERPINE2-1:1	chr2	224832199	224832627	-	lnc-SERPINE2-1	lnc-SERPINE2-1:1	ENSG00000228802.1	AC073641.2	SERPINE2	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-30.50chr2:224839765-224842423"	NA	inner
CUST_36902_PI429285431	1.4891305	A	2.2623663	A	0.585103681174042	0	lncRNA	38062-1_{1..3000}	n345375|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_924|NULL|-1.3352000|-0.2665485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345375|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_924|NULL|-1.3352000|-0.2665485	chr19	 24231275	 24234274	-	NA	NA	NA	NA	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60"	NA	inter
CUST_30357_PI429285431	5.186484	P	5.54714	P	0.778810370516939	0	lncRNA	32133-1_{1..331}	n335451|AY684333|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257116_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257116_10|-1.0756200|-0.0398890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335451|AY684333|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257116_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257116_10|-1.0756200|-0.0398890	chr6	  3633668	  3633998	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50013_PI429285431	0.9184675	A	0.90496683	A	1.00940187387425	0	lncRNA	53750-1_{1..322}	hg19_lincRNAsTranscripts_TCONS_l2_00027544 range=chr8:833265-860568 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027544 range=chr8:833265-860568 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	   833265	   833586	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007660	2.3123965	A	1.3144295	A	1.99718364838648	0	lncRNA	TCONS_00021252	NA	NA	NA	NA	XLOC_009941	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009941), lincRNA [TCONS_00021252]"	chr12:127359495-127369987	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00021252	TCONS_00021252	chr12	127359495	127369987	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36163_PI429285431	2.384323	A	2.8797722	P	0.709340782151314	0	lncRNA	37436-1_{1..2245}	n344724|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_273|NULL|-1.2746100|-0.1952824	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344724|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_273|NULL|-1.2746100|-0.1952824	chr12	122233636	122235880	-	NA	NA	NA	NA	SETD1B	NA	chr12:122242638-122251016	inter
CUST_28348_PI429285431	0.90143657	A	1.6917452	A	0.578220382338962	0	lncRNA	29996-1_{1..353}	n325656|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045439|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045439|-1.1846600|-0.4147684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325656|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045439|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045439|-1.1846600|-0.4147684	chr13	 90537508	 90537860	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15724_PI429285431	5.703141	P	5.4973598	P	1.15331068000244	0	lncRNA	17409-1_{1..722}	lnc-C8orf22-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C8orf22-2:2	chr8	 50105666	 50106387	+	lnc-C8orf22-2	lnc-C8orf22-2:2	XLOC_006793	linc-SNTG1-2	NA	NA	NA	inter
CUST_21662_PI429285431	0.9072197	A	1.0839719	A	0.884692378700656	0	lncRNA	23272-1_{1..397}	lnc-MAT2B-3:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAT2B-3:13	chr5	163913680	163914076	+	lnc-MAT2B-3	lnc-MAT2B-3:13	ENSG00000241956.5	CTC-340A15.2	NA	NA	NA	inter
CUST_4042_PI429285431	4.7176747	P	5.0387244	P	0.800487233864483	0	lncRNA	4004-1_{1..503}	"transcript_id ""ENST00000532979.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532979.1"" | genecode_v17"	chr11	 86438397	 86438899	+	ENSG00000255250.1	ENST00000532979.1	CTD-2005H7.2	CTD-2005H7.2-001	NA	NA	NA	inter
CUST_23531_PI429285431	1.7302735	A	1.597909	A	1.09608866062102	0	lncRNA	25098-1_{1..673}	lnc-EMILIN2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EMILIN2-1:2	chr18	  2960616	  2961288	+	lnc-EMILIN2-1	lnc-EMILIN2-1:2	ENSG00000265907.1	RP11-737O24.2	LPIN2	"hg19_refFlat_LPIN2:range=chr18:2920291-29608385'pad=0,hg19_refFlat_LPIN2:range=chr18:2920291-29608385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80chr18:2950616-2970754"	NA	inner
CUST_30371_PI429285431	4.7118535	P	2.9907923	A	3.2967881886043	0	lncRNA	32147-1_{1..231}	n335470|AY820830|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257853|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257853|1.2521600|-0.1248268	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335470|AY820830|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257853|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257853|1.2521600|-0.1248268	chr6	138195997	138196227	+	NA	NA	NA	NA	TNFAIP3	NA	chr6:138188581-138204449	inner
CUST_29463_PI429285431	3.2699928	P	3.2162118	P	1.03798169375884	0	lncRNA	31221-1_{1..467}	n332874|AF085965|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066844|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066844|-0.2714440|-0.2391672	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332874|AF085965|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066844|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066844|-0.2714440|-0.2391672	chr17	 46933165	 46933631	+	NA	NA	NA	NA	CALCOCO2	NA	chr17:46923165-46942229	inner
CUST_52127_PI429285431	0.8932881	A	0.95188934	A	0.960194621552685	0	lncRNA	55651-1_{1..327}	hg19_lincRNAsTranscripts_TCONS_l2_00018166 range=chr22:20345317-20345766 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018166 range=chr22:20345317-20345766 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 20345317	 20345643	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16956_PI429285431	9.185901	P	9.70182	P	0.699347305066624	0	lncRNA	18668-1_{1..405}	lnc-CD83-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD83-2:2	chr6	 14444724	 14445128	+	lnc-CD83-2	lnc-CD83-2:2	XLOC_005180	linc-JARID2-4	NA	NA	NA	inter
CUST_26653_PI429285431	1.3769767	A	0.8950808	A	1.39657775649905	0	lncRNA	28153-1_{1..1469}	lnc-CNBD1-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CNBD1-4:6	chr8	 89747954	 89749422	+	lnc-CNBD1-4	lnc-CNBD1-4:6	ENSG00000253553.1	RP11-586K2.1	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20"	NA	inter
CUST_39192_PI429285431	1.5915442	A	0.8956937	A	1.61983908192623	0	lncRNA	40167-1_{1..2772}	n385947|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009whu.1||-1.1579200|-0.2783452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385947|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009whu.1||-1.1579200|-0.2783452	chr1	142853227	142855998	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23286_PI429285431	10.083666	P	10.002113	P	1.05815648826965	0	lncRNA	24857-1_{1..626}	lnc-AC135048.13.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC135048.13.1-1:2	chr16	 30967521	 30968146	+	lnc-AC135048.13.1-1	lnc-AC135048.13.1-1:2	ENSG00000261487.1	AC135048.13	SETD1A	NA	chr16:30968615-30977832	inter
CUST_33720_PI429285431	1.0580679	A	0.91852033	A	1.10155961197232	0	lncRNA	35279-1_{1..3000}	n340498|AK125534|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2960|NULL|-0.8826010|-0.1771976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340498|AK125534|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2960|NULL|-0.8826010|-0.1771976	chr17	  7916644	  7919643	-	NA	NA	NA	NA	GUCY2D	"hg19_refFlat_GUCY2D:range=chr17:7906366-79198485'pad=0,hg19_refFlat_GUCY2D:range=chr17:7906366-79198485'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.80chr17:7906644-7923658"	NA	inner
CUST_46396_PI429285431	9.747334	P	9.659911	P	1.06247065856416	0	lncRNA	50613-1_{1..1656}	"gi|381140030|ref|NR_046469.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 12, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|381140030|ref|NR_046469.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 12, non-coding RNA"	Chr14	101292445	101294100	+	55384	NR_046469.1	NA	NA	NA	NA	NA	inter
CUST_9633_PI429285431	0.9027687	A	0.88763535	A	1.01054484801933	0	lncRNA	11150-1_{1..728}	lnc-RNF219-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF219-1:4	chr13	 79365034	 79365761	-	lnc-RNF219-1	lnc-RNF219-1:4	XLOC_010664	linc-RNF219-1	NA	NA	NA	inter
CUST_26585_PI429285431	0.91548455	A	0.9077913	A	1.00534679792244	0	lncRNA	28088-1_{1..793}	lnc-RNASE10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNASE10-2:1	chr14	 21058343	 21059135	+	lnc-RNASE10-2	lnc-RNASE10-2:1	ENSG00000258573.1	RP11-14J7.6	RNASE11	NA	chr14:21051051-21058417	inner
CUST_26700_PI429285431	0.9100622	A	0.91284966	A	0.998069745302452	0	lncRNA	28203-5_{12001..15000}	n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	chr13	 70693309	 70696308	+	NA	NA	NA	NA	KLHL1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0,hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0 3'pad=0 strand=- repeatMasking=none,-105.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr13:70671309-70682625"	NA	inner
CUST_50141_PI429285431	3.8736196	P	4.5907927	P	0.608288190223828	0	lncRNA	53867-1_{1..848}	hg19_lincRNAsTranscripts_TCONS_l2_00028592 range=chr9:73610-75133 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028592 range=chr9:73610-75133 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	    73610	    74457	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25832_PI429285431	1.8572606	A	2.1070485	A	0.841020050003793	0	lncRNA	27353-1_{1..530}	lnc-NDE1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDE1-3:1	chr16	 15704157	 15704686	+	lnc-NDE1-3	lnc-NDE1-3:1	ENSG00000257769.1	CTB-193M12.1	KIAA0430	"hg19_refFlat_KIAA0430:range=chr16:15690550-157330905'pad=0,hg19_refFlat_KIAA0430:range=chr16:15690550-157330905'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70chr16:15694157-15714420"	NA	inner
CUST_49121_PI429285431	8.588194	P	8.18447	P	1.32291833001533	0	lncRNA	52945-1_{1..384}	hg19_lincRNAsTranscripts_TCONS_l2_00020562 range=chr4:69917072-69955324 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020562 range=chr4:69917072-69955324 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 69917072	 69917455	+	NA	NA	NA	NA	UGT2B7	NA	chr4:69962193-69965324	inter
CUST_2122_PI429285431	3.8770537	P	4.1596546	P	0.822107579604032	0	lncRNA	2113-1_{1..397}	"transcript_id ""ENST00000602740.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602740.1"" | genecode_v17"	chr5	 29164532	 29164928	+	ENSG00000259786.2	ENST00000602740.1	CTD-2118P12.1	CTD-2118P12.1-005	NA	NA	NA	inter
CUST_1694_PI429285431	1.5241382	A	0.8870452	A	1.55519232041094	0	lncRNA	1677-1_{1..387}	"transcript_id ""ENST00000514452.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514452.1"" | genecode_v17"	chr4	 11771992	 11772378	+	ENSG00000249631.1	ENST00000514452.1	RP11-281P23.2	RP11-281P23.2-010	NA	NA	NA	inter
CUST_12583_PI429285431	0.9069182	A	0.9163892	A	0.993456704256322	0	lncRNA	14192-1_{1..509}	lnc-GPC6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPC6-1:1	chr13	 93710012	 93710520	+	lnc-GPC6-1	lnc-GPC6-1:1	XLOC_010471	linc-GPC6	NA	NA	NA	inter
CUST_37384_PI429285431	0.9147997	A	0.91960925	A	0.996671824672455	0	lncRNA	38487-1_{1..498}	n345833|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1382|NULL|-1.2716000|-0.2128515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345833|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1382|NULL|-1.2716000|-0.2128515	chr9	 85177784	 85178281	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26405_PI429285431	0.8905988	A	1.2213207	A	0.79513851044046	0	lncRNA	27912-1_{1..576}	lnc-ANKRD42-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD42-3:3	chr11	 83362623	 83363198	+	lnc-ANKRD42-3	lnc-ANKRD42-3:3	ENSG00000255311.1	RP11-160H12.2	DLG2	NA	chr11:83352623-83373053	inner
CUST_22906_PI429285431	0.909214	A	0.90624267	A	1.00206169138108	0	lncRNA	24483-1_{1..3000}	lnc-ZNF154-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF154-1:2	chr19	 58220307	 58223306	-	lnc-ZNF154-1	lnc-ZNF154-1:2	ENSG00000249233.2	ZNF154	ZNF154	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SETMAR:range=chr3:4345055-43589305'pad=0,hg19_refFlat_SETMAR:range=chr3:4345055-43589305'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30chr19:58211810-58220579"	NA	inner
CUST_40501_PI429285431	0.91821426	A	1.07551	A	0.896704324192881	0	lncRNA	41266-1_{1..1609}	n409436|NR_033823_5|lncRNA|Homosapiens||RefGeneNoncode|NR_033823_5||-0.7565780|-0.2191702	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409436|NR_033823_5|lncRNA|Homosapiens||RefGeneNoncode|NR_033823_5||-0.7565780|-0.2191702	chr6	  1976468	  1978076	+	NA	NA	NA	NA	GMDS	NA	chr6:1966468-2006456	inner
CUST_78_PI429201921	1.9313815	A	2.687307	A	0.592166384292532	0	lncRNA	80-1_{1..2366}	TC06003235.hg.1	TCONS_l2_00024541-XLOC_l2_012828 // Broad TUCP // linc-FAM120B-3 chr6:+:170475884-170478226 // chr6 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00025299-XLOC_l2_012828 // Broad TUCP // linc-FAM120B-3 chr6:+:170477740-170478251 // chr6 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6:+:170475884-170478226	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00024541-XLOC_l2_012828	linc-FAM120B-3	chr6	170475884	170478226	+	NA	NA	NA	NA	S1PR2	NA	chr19:10332109-10341948	Unknown
CUST_39675_PI429285431	4.8572607	P	4.950793	P	0.937225231930652	0	lncRNA	40616-1_{1..805}	n405305|NR_001435_6|lncRNA|Homosapiens||RefGeneNoncode|NR_001435_6||-1.1275400|-0.3030618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405305|NR_001435_6|lncRNA|Homosapiens||RefGeneNoncode|NR_001435_6||-1.1275400|-0.3030618	chr6	  4537840	  4538644	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7048_PI429285431	0.90041167	A	0.89787245	A	1.00176160298654	0	lncRNA	6993-1_{1..478}	"transcript_id ""ENST00000437466.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437466.1"" | genecode_v17"	chrX	 41907136	 41907613	-	ENSG00000233103.1	ENST00000437466.1	RP11-524P6.1	RP11-524P6.1-001	NA	NA	NA	inter
CUST_10340_PI429285431	1.0429302	A	1.8404481	A	0.575338173158825	0	lncRNA	11869-1_{1..1361}	lnc-SLC4A1AP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC4A1AP-1:2	chr2	 27940018	 27941378	+	lnc-SLC4A1AP-1	lnc-SLC4A1AP-1:2	XLOC_001406	linc-MRPL33	NA	NA	NA	inter
CUST_51267_PI429285431	2.9421968	A	2.5348785	A	1.32621832991197	0	lncRNA	54874-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008492 range=chr15:28992868-29004385 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008492 range=chr15:28992868-29004385 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28992868	 28995867	+	NA	NA	NA	NA	LOC653720	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30chr15:28982868-28983530"	NA	inter
CUST_18692_PI429285431	6.4608283	P	5.66346	P	1.73792798254303	0	lncRNA	20391-1_{1..1069}	lnc-SPATA21-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPATA21-2:5	chr1	 16905688	 16906756	-	lnc-SPATA21-2	lnc-SPATA21-2:5	ENSG00000219481	NBPF1	NBPF1	NA	chr1:16895688-16915862	inner
LNCA_21_P0014192	7.7511187	P	7.8280773	P	0.948054170378812	0	lncRNA	XR_108786	XR_108786	XR_108786	NA	NA	LOC100507558	uncharacterized LOC100507558	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507558 (LOC100507558), miscRNA [XR_108786]"	chr7:148497556-148497497	hs|7q36.1	Agilent_HUMAN_G3V2	XR_108786	XR_108786	chr7	148497497	148497556	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29742_PI429285431	9.790185	P	9.328793	P	1.37686966511324	0	lncRNA	31504-1_{1..711}	n333417|BC011177|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087603|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087603|1.8911800|-0.0723185	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333417|BC011177|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087603|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087603|1.8911800|-0.0723185	chr6	 43738471	 43739181	+	NA	NA	NA	NA	VEGFA	NA	chr6:43737946-43749182	inner
CUST_33913_PI429285431	2.9029005	A	2.7052703	A	1.14681302875002	0	lncRNA	35455-1_{1..2003}	n340706|AK096807|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3169|NULL|-0.9718760|-0.1159980	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340706|AK096807|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3169|NULL|-0.9718760|-0.1159980	chr17	 43315394	 43317396	-	NA	NA	NA	NA	FMNL1	"hg19_refFlat_FMNL1:range=chr17:43299492-433239635'pad=0,hg19_refFlat_FMNL1:range=chr17:43299492-433239635'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.10;hg19_refFlat_FMNL3:range=chr12:50039598-501009635'pad=0,hg19_refFlat_FMNL3:range=chr12:50039598-501009635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr17:43305394-43324685"	NA	inner
CUST_40638_PI429285431	1.8862631	A	0.90294504	A	1.97700711067721	0	lncRNA	41378-1_{1..3000}	n410149|NR_036610|lncRNA|Homosapiens||RefGeneNoncode|NR_036610||1.5076500|-0.3328069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410149|NR_036610|lncRNA|Homosapiens||RefGeneNoncode|NR_036610||1.5076500|-0.3328069	chr6	 36562089	 36565088	+	NA	NA	NA	NA	SRSF3	NA	chr6:36562090-36572244	inner
CUST_23781_PI429285431	1.4215686	A	1.0609974	A	1.28393413942706	0	lncRNA	25346-1_{1..867}	lnc-C22orf26-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C22orf26-3:1	chr22	 46465540	 46466406	-	lnc-C22orf26-3	lnc-C22orf26-3:1	ENSG00000235159.1	RP6-109B7.4	NA	NA	NA	inter
CUST_27712_PI429285431	3.4884226	P	3.928268	P	0.737213604631221	0	lncRNA	29291-1_{1..500}	n324923|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079959|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079959|-1.1608700|-0.2207672	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324923|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079959|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079959|-1.1608700|-0.2207672	chr20	 59085674	 59086173	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012233	0.8991926	A	0.8928598	A	1.00439921070639	0	lncRNA	ENST00000417335	XR_109675	XR_109675	NA	NA	XLOC_l2_009219	NA	ENST00000417335	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506471 (LOC100506471), miscRNA [XR_109675]"	chr21:40362812-40362753	hs|21q22.2	Agilent_HUMAN_G3V2	ENST00000417335	ENST00000417335	chr21	 40362753	 40362812	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50502_PI429285431	2.3893328	A	2.8298123	A	0.736889652294214	0	lncRNA	54198-1_{1..862}	hg19_lincRNAsTranscripts_TCONS_l2_00030321 range=chrX:106769825-106797840 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030321 range=chrX:106769825-106797840 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	106769825	106770686	+	NA	NA	NA	NA	FRMPD3	NA	chrX:106765680-106807840	inter
CUST_45241_PI429285431	0.89773256	A	0.90274215	A	0.99653363856627	0	lncRNA	49695-2_{3001..3327}	"gi|341915433|ref|XR_132545.1| PREDICTED: Homo sapiens uncharacterized LOC286149 (LOC286149), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|341915433|ref|XR_132545.1| PREDICTED: Homo sapiens uncharacterized LOC286149 (LOC286149), misc_RNA"	NA	NA	NA	NA	NA	XR_132545.1	NA	NA	NA	NA	NA	Unknown
CUST_14672_PI429285431	0.8867975	A	0.8831004	A	1.00256592079553	0	lncRNA	16341-1_{1..285}	lnc-CLCN3-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLCN3-4:2	chr4	171199515	171199799	+	lnc-CLCN3-4	lnc-CLCN3-4:2	XLOC_003775	linc-GALNTL6-4	NA	NA	NA	inter
CUST_42415_PI429285431	8.254329	P	8.031487	P	1.16703028486676	0	lncRNA	45126-1_{1..104}	ENST00000408212 ncrna:snoRNA chromosome:GRCh37:18:19030614:19030717:-1 gene:ENSG00000221139 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408212 ncrna:snoRNA chromosome:GRCh37:18:19030614:19030717:-1 gene:ENSG00000221139 gene_biotype:snoRNA transcript_biotype:snoRNA	chr18	 19030614	 19030717	-	ENSG00000221139	ENST00000408212	NA	NA	GREB1L	NA	chr18:19020614-19040717	inner
CUST_46468_PI429285431	1.8355548	A	2.4856577	A	0.637234861361073	0	lncRNA	50668-1_{1..3000}	"gi|213513047|ref|NR_024490.1| Homo sapiens GABPB1 antisense RNA 1 (GABPB1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|213513047|ref|NR_024490.1| Homo sapiens GABPB1 antisense RNA 1 (GABPB1-AS1), non-coding RNA"	Chr15	 50646371	 50649370	+	100129387	NR_024490.1	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00"	NA	inter
CUST_44590_PI429285431	4.8670397	P	4.225843	P	1.55962231283128	0	lncRNA	49170-1_{1..3000}	"gi|290560747|ref|NR_033362.1| Homo sapiens autophagy related 12 (ATG12), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|290560747|ref|NR_033362.1| Homo sapiens autophagy related 12 (ATG12), transcript variant 2, non-coding RNA"	Chr5	115163893	115166892	-	9140	NR_033362.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90"	NA	inter
CUST_11693_PI429285431	1.5913804	A	2.2900145	A	0.616155287785002	0	lncRNA	13271-1_{1..476}	lnc-PDE5A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE5A-2:1	chr4	120725607	120726082	-	lnc-PDE5A-2	lnc-PDE5A-2:1	XLOC_004058	linc-PDE5A-1	NA	NA	NA	inter
CUST_5078_PI429285431	3.8330226	P	3.7574039	P	1.05381286688125	0	lncRNA	5018-1_{1..548}	"transcript_id ""ENST00000497397.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000497397.1"" | genecode_v17"	chr14	106114261	106114808	-	ENSG00000253364.1	ENST00000497397.1	RP11-731F5.2	RP11-731F5.2-001	NA	NA	NA	inter
CUST_24189_PI429285431	0.8962021	A	0.89282066	A	1.00234658453216	0	lncRNA	25740-1_{1..556}	lnc-REM2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-REM2-2:1	chr14	 23423540	 23424095	+	lnc-REM2-2	lnc-REM2-2:1	ENSG00000257285.1	RP11-298I3.1	HAUS4	NA	chr14:23415437-23426351	inner
CUST_9036_PI429285431	1.5977939	A	1.0403057	A	1.4717046783026	0	lncRNA	10562-1_{1..571}	lnc-DAD1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DAD1-2:6	chr14	 22901658	 22902228	-	lnc-DAD1-2	lnc-DAD1-2:6	ENSG00000251002	AE000661.37	NA	NA	NA	inter
CUST_8938_PI429285431	0.90189826	A	0.90949965	A	0.99474497416591	0	lncRNA	10473-1_{1..1440}	lnc-METTL15-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-METTL15-4:6	chr11	 27719025	 27720464	+	lnc-METTL15-4	lnc-METTL15-4:6	ENSG00000245573	AC104563.1	BDNF	"hg19_refFlat_BDNF:range=chr11:27679368-277225835'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277225835'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BDNF:range=chr11:27679368-277429615'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277429615'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BDNF:range=chr11:27679368-276958315'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-276958315'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BDNF:range=chr11:27679368-276801115'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-276801115'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BDNF:range=chr11:27679368-277209525'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277209525'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00chr11:27709025-27729721"	NA	inter
CUST_170_PI429285431	10.1320305	P	9.854596	P	1.21203763781173	0	lncRNA	161-1_{1..406}	"transcript_id ""ENST00000422124.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422124.1"" | genecode_v17"	chr1	 17215033	 17215438	-	ENSG00000238142.1	ENST00000422124.1	RP11-108M9.4	RP11-108M9.4-003	NA	NA	NA	inter
CUST_4030_PI429285431	0.8914785	A	1.0968738	A	0.867301013177384	0	lncRNA	3991-1_{1..572}	"transcript_id ""ENST00000532217.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532217.1"" | genecode_v17"	chr11	 81811235	 81811806	-	ENSG00000245832.2	ENST00000532217.1	RP11-179A16.1	RP11-179A16.1-003	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30"	NA	inter
CUST_19585_PI429285431	2.722814	A	2.8054147	A	0.944353755236965	0	lncRNA	21241-1_{1..570}	lnc-ZDHHC5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZDHHC5-1:3	chr11	 57417771	 57418340	+	lnc-ZDHHC5-1	lnc-ZDHHC5-1:3	ENSG00000254602.1	AP000662.4	CLP1	"hg19_refFlat_YPEL4:range=chr11:57413454-574145805'pad=0,hg19_refFlat_YPEL4:range=chr11:57413454-574145805'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr11:57425216-57428205"	NA	inter
CUST_21231_PI429285431	1.346287	A	0.91261697	A	1.35066512808197	0	lncRNA	22857-1_{1..2562}	lnc-TTC23-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTC23-1:1	chr15	 99671008	 99673569	-	lnc-TTC23-1	lnc-TTC23-1:1	ENSG00000261054.1	RP11-6O2.4	TTC23	"hg19_refFlat_SYNM:range=chr15:99645406-996732635'pad=0,hg19_refFlat_SYNM:range=chr15:99645406-996732635'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.70chr15:99676528-99682011"	NA	inner
CUST_21968_PI429285431	0.9021295	A	0.9009448	A	1.0008215087184	0	lncRNA	23576-1_{1..3000}	lnc-TERF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TERF1-1:1	chr8	 73975174	 73978173	+	lnc-TERF1-1	lnc-TERF1-1:1	ENSG00000253636.1	RP11-531A24.5	C8orf84	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90chr8:73976778-73985296"	NA	inter
CUST_5936_PI429285431	5.3585396	M	5.50407	P	0.904046947877398	0	lncRNA	5865-1_{1..650}	"transcript_id ""ENST00000579629.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579629.1"" | genecode_v17"	chr17	 66092187	 66092836	-	ENSG00000265055.1	ENST00000579629.1	AC145343.2	AC145343.2-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60"	NA	inter
CUST_46548_PI429285431	5.783969	P	5.674986	P	1.07846772349293	0	lncRNA	50733-1_{1..3000}	"gi|312261251|ref|NR_037582.1| Homo sapiens adaptor-related protein complex 3, sigma 2 subunit (AP3S2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|312261251|ref|NR_037582.1| Homo sapiens adaptor-related protein complex 3, sigma 2 subunit (AP3S2), transcript variant 3, non-coding RNA"	Chr15	 90373831	 90376830	-	10239	NR_037582.1	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40"	NA	inter
CUST_44184_PI429285431	0.9422596	A	1.6691914	A	0.604187482555867	0	lncRNA	48840-1_{1..1088}	"gi|410170461|ref|XR_171085.1| PREDICTED: Homo sapiens uncharacterized LOC101059937 (LOC101059937), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170461|ref|XR_171085.1| PREDICTED: Homo sapiens uncharacterized LOC101059937 (LOC101059937), misc_RNA"	NA	NA	NA	NA	NA	XR_171085.1	NA	NA	NA	NA	NA	Unknown
CUST_30909_PI429285431	6.5483136	P	6.416812	P	1.09543326770637	0	lncRNA	32697-1_{1..308}	n336947|BC101122|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000336531|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000336531|-0.0734560|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336947|BC101122|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000336531|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000336531|-0.0734560|-1.0000000	chr21	 31964785	 31965092	+	NA	NA	NA	NA	KRTAP6-3	NA	chr21:31964759-31965374	inner
CUST_23046_PI429285431	2.48192	A	2.4520762	A	1.02090158712745	0	lncRNA	24617-1_{1..835}	lnc-RGS5-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RGS5-1:13	chr1	163278334	163279168	-	lnc-RGS5-1	lnc-RGS5-1:13	ENSG00000232995.2	RP11-267N12.3	NA	NA	NA	inner
LNCA_21_P0013687	5.7978067	P	5.8475122	P	0.966133527416069	0	lncRNA	TCONS_l2_00029630	NA	NA	NA	NA	XLOC_l2_015410	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015410), lincRNA [TCONS_l2_00029630]"	chr9:138354576-138354517	hs|9q34.3	Agilent_HUMAN_G3V2	TCONS_l2_00029630	TCONS_l2_00029630	chr9	138354517	138354576	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007770	5.8919826	P	5.5508513	P	1.26674953563724	0	lncRNA	ENST00000321694	NA	NA	NA	NA	VSIG10	V-set and immunoglobulin domain containing 10	ENST00000321694	NA	GO:0016020|GO:0016021	"BROAD Institute lincRNA (XLOC_010212), lincRNA [TCONS_00020942]"	chr12:118558887-118555682	hs|12q24.23	Agilent_HUMAN_G3V2	ENST00000321694	ENST00000321694	chr12	118555682	118558887	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4213_PI429285431	7.967606	P	8.108298	P	0.907083961011769	0	lncRNA	4172-1_{1..571}	"transcript_id ""ENST00000549055.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549055.1"" | genecode_v17"	chr12	 30353916	 30354486	+	ENSG00000257262.1	ENST00000549055.1	RP11-776A13.1	RP11-776A13.1-001	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60"	NA	inter
CUST_17416_PI429285431	5.9532704	P	6.467947	P	0.699949818622767	0	lncRNA	19141-1_{1..588}	lnc-TMEM132D-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132D-2:1	chr12	130552911	130553498	-	lnc-TMEM132D-2	lnc-TMEM132D-2:1	XLOC_010261	linc-TMEM132D-4	NA	NA	NA	inter
CUST_52174_PI429285431	3.7938945	P	4.5138245	P	0.607126899463782	0	lncRNA	55695-1_{1..2644}	hg19_lincRNAsTranscripts_TCONS_l2_00017980 range=chr22:24643891-24646939 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017980 range=chr22:24643891-24646939 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 24643891	 24646534	-	NA	NA	NA	NA	SPECC1L	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50chr22:24653368-24656939"	NA	inter
CUST_47216_PI429285431	11.534519	P	11.506787	P	1.01940829661178	0	lncRNA	51291-1_{1..995}	"gi|390517022|ref|NR_052001.1| Homo sapiens inosine triphosphatase (nucleoside triphosphate pyrophosphatase) (ITPA), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|390517022|ref|NR_052001.1| Homo sapiens inosine triphosphatase (nucleoside triphosphate pyrophosphatase) (ITPA), transcript variant 5, non-coding RNA"	Chr20	  3190134	  3191128	+	3704	NR_052001.1	NA	NA	NA	NA	NA	inter
CUST_33105_PI429285431	0.9207542	A	1.1770202	A	0.837252103119758	0	lncRNA	34706-2_{3001..3724}	n339795|BC034640|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2242|NULL|-0.6881290|-0.2588151	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339795|BC034640|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2242|NULL|-0.6881290|-0.2588151	chr18	 11669454	 11670177	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18382_PI429285431	5.9945765	P	5.5627065	P	1.34898097335632	0	lncRNA	20109-1_{1..3000}	lnc-MST1P9-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MST1P9-2:2	chr1	 16971141	 16974140	-	lnc-MST1P9-2	lnc-MST1P9-2:2	ENSG00000215908	CROCCP2	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90"	NA	inter
CUST_41514_PI429285431	10.37331	P	10.255304	P	1.08523388523327	0	lncRNA	42744-1_{1..82}	ENST00000581818 ncrna:miRNA chromosome:GRCh37:11:59362550:59362631:-1 gene:ENSG00000264559 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581818 ncrna:miRNA chromosome:GRCh37:11:59362550:59362631:-1 gene:ENSG00000264559 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 59362550	 59362631	-	ENSG00000264559	ENST00000581818	NA	NA	OSBP	NA	chr11:59352550-59372631	inner
CUST_722_PI429285431	4.2422633	P	4.2906117	P	0.967042767859305	0	lncRNA	715-1_{1..542}	"transcript_id ""ENST00000592816.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592816.1"" | genecode_v17"	chr2	  6789284	  6789825	-	ENSG00000236172.2	ENST00000592816.1	AC097517.2	AC097517.2-052	NA	NA	NA	inter
LNCA_21_P0007919	0.9167189	A	0.9065635	A	1.00706402018798	0	lncRNA	ENST00000447784	NA	NA	NA	NA	XLOC_010286	NA	ENST00000447784	NA	NA	"BROAD Institute lincRNA (XLOC_010286), lincRNA [TCONS_00021523]"	chr13:19481891-19481950	hs|13q11	Agilent_HUMAN_G3V2	ENST00000447784	ENST00000447784	chr13	 19481891	 19481950	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32979_PI429285431	6.1364655	P	5.624342	P	1.42614779563386	0	lncRNA	34595-1_{1..1159}	n339656|CR620945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2100|NULL|-0.4667260|-0.3440363	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339656|CR620945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2100|NULL|-0.4667260|-0.3440363	chr20	 33434147	 33435305	-	NA	NA	NA	NA	GGT7	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.14;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.71;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50chr20:33432523-33445306"	NA	inner
CUST_16749_PI429285431	0.89904535	A	0.8998924	A	0.999413042007985	0	lncRNA	18456-1_{1..481}	lnc-PPP3CA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-PPP3CA-1:1	chr4	101735371	101735851	-	lnc-PPP3CA-1	lnc-PPP3CA-1:1	XLOC_004026	linc-EMCN-1	NA	NA	NA	inter
CUST_26336_PI429285431	0.9037378	A	0.8982436	A	1.00381554998698	0	lncRNA	27843-1_{1..435}	lnc-CD38-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CD38-3:1	chr4	 16513556	 16513990	+	lnc-CD38-3	lnc-CD38-3:1	ENSG00000248138.1	RP11-446J8.1	LDB2	"hg19_refFlat_LDB2:range=chr4:16504266-169001085'pad=0,hg19_refFlat_LDB2:range=chr4:16504266-169001085'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_LDB2:range=chr4:16507501-169001085'pad=0,hg19_refFlat_LDB2:range=chr4:16507501-169001085'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr4:16503556-16523810"	NA	inner
LNCA_21_P0005145	0.91510457	A	0.90400046	A	1.0077264789098	0	lncRNA	TCONS_00012631	NA	NA	NA	NA	XLOC_005559	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005559), lincRNA [TCONS_00012631]"	chr6:170367371-170367430	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012631	TCONS_00012631	chr6	170367371	170367430	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36606_PI429285431	3.3992558	P	2.8976877	A	1.41575154084938	0	lncRNA	37799-1_{1..2710}	n345102|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_651|NULL|-1.5194900|-0.3207453	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345102|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_651|NULL|-1.5194900|-0.3207453	chr10	 62431489	 62434198	+	NA	NA	NA	NA	ANK3	NA	chr10:62421489-62493284	inner
CUST_13635_PI429285431	1.1318694	A	1.5936185	A	0.726105406419025	0	lncRNA	15274-1_{1..603}	lnc-PRND-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRND-1:1	chr20	  4744459	  4745061	+	lnc-PRND-1	lnc-PRND-1:1	XLOC_013447	linc-CDS2	NA	NA	NA	inter
CUST_12856_PI429285431	4.971996	P	4.5210667	P	1.3669204636719	0	lncRNA	14482-1_{1..1040}	lnc-C18orf26-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C18orf26-2:1	chr18	 52561761	 52562800	+	lnc-C18orf26-2	lnc-C18orf26-2:1	XLOC_012681	linc-WDR7-7	RAB27B	NA	chr18:52551761-52562747	inner
CUST_15458_PI429285431	0.8938079	A	1.441365	A	0.684177658756627	0	lncRNA	17146-1_{1..429}	lnc-TLR4-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TLR4-3:2	chr9	120565259	120565687	+	lnc-TLR4-3	lnc-TLR4-3:2	XLOC_007536	linc-CEP110-14	NA	NA	NA	inter
CUST_9453_PI429285431	0.89149976	A	0.90009874	A	0.994057368956842	0	lncRNA	10958-1_{1..323}	lnc-SLC15A4-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC15A4-9:1	chr12	128155348	128155670	-	lnc-SLC15A4-9	lnc-SLC15A4-9:1	XLOC_010253	linc-DHX37-14	NA	NA	NA	inter
CUST_17118_PI429285431	0.89788115	A	2.0539	A	0.448749162017597	0	lncRNA	18828-1_{1..558}	lnc-ASB4-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASB4-3:4	chr7	 95242363	 95242920	+	lnc-ASB4-3	lnc-ASB4-3:4	XLOC_006178	linc-DYNC1I1-2	NA	NA	NA	inter
CUST_9223_PI429285431	5.090885	P	4.648998	P	1.35837988441994	0	lncRNA	10734-1_{1..412}	lnc-PLEKHA3-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLEKHA3-1:5	chr2	179403425	179403836	+	lnc-PLEKHA3-1	lnc-PLEKHA3-1:5	ENSG00000237298	AC009948.3	TTN	"hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90chr2:179393425-179413649"	NA	inter
CUST_44327_PI429285431	5.1398516	P	4.745266	P	1.31456511003541	0	lncRNA	48958-1_{1..3000}	"gi|223468604|ref|NR_026787.1| Homo sapiens leishmanolysin-like (metallopeptidase M8 family) (LMLN), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|223468604|ref|NR_026787.1| Homo sapiens leishmanolysin-like (metallopeptidase M8 family) (LMLN), transcript variant 4, non-coding RNA"	Chr3	197687071	197690070	+	89782	NR_026787.1	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00"	NA	inter
LNCA_21_P0003486	7.1743565	P	6.8427873	P	1.25838135490174	0	lncRNA	ENST00000514427	NA	NA	NA	NA	XLOC_004025	NA	ENST00000514427	NA	NA	"BROAD Institute lincRNA (XLOC_004025), lincRNA [TCONS_00007799]"	chr4:101712388-101712329	hs|4q24	Agilent_HUMAN_G3V2	ENST00000514427	ENST00000514427	chr4	101712329	101712388	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11815_PI429285431	1.3498513	A	0.9004406	A	1.36548238200505	0	lncRNA	13397-1_{1..432}	lnc-TMEM132E-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132E-2:1	chr17	 32802817	 32803248	+	lnc-TMEM132E-2	lnc-TMEM132E-2:1	XLOC_012175	linc-TMEM132E-2	NA	NA	NA	inter
CUST_14367_PI429285431	1.6180823	A	2.364376	A	0.596133064635696	0	lncRNA	16027-1_{1..460}	lnc-FAM153C-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM153C-3:1	chr5	177388656	177389115	+	lnc-FAM153C-3	lnc-FAM153C-3:1	XLOC_004669	linc-FAM153C-2	NA	NA	NA	inter
CUST_51107_PI429285431	1.1537508	A	1.7238395	A	0.673575374294233	0	lncRNA	54745-1_{1..551}	hg19_lincRNAsTranscripts_TCONS_l2_00007286 range=chr13:91779875-91807446 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007286 range=chr13:91779875-91807446 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 91779875	 91780425	-	NA	NA	NA	NA	NA	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70"	NA	inter
CUST_38303_PI429285431	2.6266012	A	3.0519168	A	0.744675810509334	0	lncRNA	39354-1_{1..1230}	n381980|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001umu.2||-0.1259690|-0.2510555	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381980|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001umu.2||-0.1259690|-0.2510555	chr13	 20553662	 20554891	+	NA	NA	NA	NA	ZMYM2	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70chr13:20543662-20564892"	NA	inner
LNCA_21_P0002079	0.9176182	A	0.92460454	A	0.995169144425534	0	lncRNA	ENST00000422683	NA	NA	NA	NA	XLOC_002232	NA	ENST00000422683	NA	NA	"BROAD Institute lincRNA (XLOC_002232), lincRNA [TCONS_00003345]"	chr2:103733358-103733299	hs|2q12.1	Agilent_HUMAN_G3V2	ENST00000422683	ENST00000422683	chr2	103733299	103733358	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26125_PI429285431	2.4899049	A	2.9491081	A	0.727387883831947	0	lncRNA	27636-1_{1..771}	lnc-TMEM9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM9-1:1	chr1	201191794	201192564	-	lnc-TMEM9-1	lnc-TMEM9-1:1	ENSG00000229821.1	RP11-567E21.3	IGFN1	"hg19_refFlat_IGFN1:range=chr1:201162422-2011975275'pad=0,hg19_refFlat_IGFN1:range=chr1:201162422-2011975275'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20chr1:201181794-201198080"	NA	inner
CUST_46166_PI429285431	5.346781	P	5.963274	P	0.652254546315982	0	lncRNA	50415-1_{1..1484}	"gi|397139477|ref|XR_158871.1| PREDICTED: Homo sapiens uncharacterized LOC100996246 (LOC100996246), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139477|ref|XR_158871.1| PREDICTED: Homo sapiens uncharacterized LOC100996246 (LOC100996246), misc_RNA"	Chr12	132671280	132672763	-	100996246	XR_158871.2	NA	NA	NA	NA	NA	inter
CUST_35743_PI429285431	1.9481103	A	1.760509	A	1.13886859852973	0	lncRNA	37162-1_{1..788}	n342917|CR594880|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5425|NULL|-1.1744400|-0.3483306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342917|CR594880|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5425|NULL|-1.1744400|-0.3483306	chr6	105530415	105531202	+	NA	NA	NA	NA	LIN28B	NA	chr6:105520415-105531206	inner
CUST_18984_PI429285431	4.6811676	P	5.0753455	P	0.760922854564895	0	lncRNA	20676-1_{1..388}	lnc-EIF2AK3-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-EIF2AK3-3:2	chr2	 89124489	 89124876	-	lnc-EIF2AK3-3	lnc-EIF2AK3-3:2	ENSG00000240040	AC096579.13	NA	NA	NA	inter
CUST_19918_PI429285431	1.4104944	A	1.0606698	A	1.27440567818699	0	lncRNA	21573-1_{1..539}	lnc-SHANK2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHANK2-4:1	chr11	 70208982	 70209520	-	lnc-SHANK2-4	lnc-SHANK2-4:1	ENSG00000254604.1	AP000487.6	PPFIA1	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50chr11:70198982-70219474"	NA	inner
CUST_41255_PI429285431	4.8425474	P	4.926794	P	0.943277002687245	0	lncRNA	42216-1_{1..90}	ENST00000582210 ncrna:miRNA chromosome:GRCh37:16:593277:593366:1 gene:ENSG00000266235 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582210 ncrna:miRNA chromosome:GRCh37:16:593277:593366:1 gene:ENSG00000266235 gene_biotype:miRNA transcript_biotype:miRNA	chr16	   593277	   593366	+	ENSG00000266235	ENST00000582210	NA	NA	SOLH	NA	chr16:583277-603366	inner
CUST_25656_PI429285431	0.899711	A	0.90222394	A	0.998259678842227	0	lncRNA	27185-1_{1..525}	lnc-SNW1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNW1-1:1	chr14	 78749411	 78749935	-	lnc-SNW1-1	lnc-SNW1-1:1	ENSG00000258723.1	RP11-332E19.2	NA	NA	NA	inter
LNCA_24_P932305	0.916804	A	1.4798396	A	0.676876436690375	0	lncRNA	XR_108628	XR_108628	XR_108628	100129033	Hs.640264	LOC100129033	QIQN5815	NA	NP862026	GO:0016020|GO:0016021	"PREDICTED: Homo sapiens QIQN5815 (LOC100129033), miscRNA [XR_108628]"	chr6:5045144-5045203	hs|6p25.1	Agilent_HUMAN_G3V2	XR_108628	XR_108628	chr6	  5045144	  5045203	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48341_PI429285431	7.652709	P	7.4834843	P	1.12445404405093	0	lncRNA	52196-1_{1..903}	hg19_lincRNAsTranscripts_TCONS_l2_00001240 range=chr1:54440301-54441604 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001240 range=chr1:54440301-54441604 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 54440301	 54441203	-	NA	NA	NA	NA	LDLRAD1	NA	chr1:54440851-54451604	inter
CUST_23121_PI429285431	4.407261	P	4.236986	P	1.12527295868626	0	lncRNA	24692-1_{1..544}	lnc-NUB1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUB1-1:3	chr7	151108756	151109299	+	lnc-NUB1-1	lnc-NUB1-1:3	ENSG00000243836.1	RP4-555L14.5	WDR86	NA	chr7:151098756-151107124	inter
CUST_35929_PI429285431	4.6890364	P	4.9234133	P	0.85005205735727	0	lncRNA	37294-2_{3001..6000}	n344569|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_117|NULL|-1.3364000|-0.2814666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344569|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_117|NULL|-1.3364000|-0.2814666	chr21	 35306857	 35309856	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24285_PI429285431	1.6866933	A	1.4760062	A	1.15723920107493	0	lncRNA	25836-1_{1..1716}	lnc-SLC39A11-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC39A11-1:4	chr17	 70588342	 70590057	-	lnc-SLC39A11-1	lnc-SLC39A11-1:4	ENSG00000227036.2	LINC00511	NA	"hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80"	NA	inter
CUST_34204_PI429285431	3.360741	P	3.3860905	P	0.982582534237799	0	lncRNA	35718-1_{1..1846}	n341058|CR593310|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3524|NULL|10.0274000|-0.2718957	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341058|CR593310|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3524|NULL|10.0274000|-0.2718957	chr11	 68228238	 68230083	+	NA	NA	NA	NA	PPP6R3	NA	chr11:68228186-68360597	inner
CUST_7896_PI429285431	1.0859076	A	1.0983225	A	0.991431567138295	0	lncRNA	9512-2_{3001..6000}	lnc-GRHL2-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-GRHL2-9:1	chr8	102028826	102031825	+	lnc-GRHL2-9	lnc-GRHL2-9:1	ENSG00000248638	ENST00000512945	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10"	NA	inter
LNCA_21_P0001604	0.9109575	A	0.9090887	A	1.00129619278368	0	lncRNA	TCONS_00001761	NA	NA	NA	NA	XLOC_001131	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001131), lincRNA [TCONS_00001761]"	chr1:191686606-191685537	hs|1q31.2	Agilent_HUMAN_G3V2	TCONS_00001761	TCONS_00001761	chr1	191685537	191686606	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45783_PI429285431	1.9112546	A	1.21813	A	1.6167813667452	0	lncRNA	50126-1_{1..3000}	"gi|385862218|ref|NR_047674.1| Homo sapiens leucine rich repeat containing 4C (LRRC4C), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385862218|ref|NR_047674.1| Homo sapiens leucine rich repeat containing 4C (LRRC4C), transcript variant 4, non-coding RNA"	Chr11	 40135749	 40138748	-	57689	NR_047674.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002952	0.90918374	A	0.906684	A	1.00173418970388	0	lncRNA	TCONS_00006001	NA	NA	NA	NA	XLOC_002628	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002628), lincRNA [TCONS_00006001]"	chr3:43156491-43168205	hs|3p22.1	Agilent_HUMAN_G3V2	TCONS_00006001	TCONS_00006001	chr3	 43156491	 43168205	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20519_PI429285431	0.91468805	A	1.8302726	A	0.530129029914578	0	lncRNA	22161-1_{1..1710}	lnc-AF131215.4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AF131215.4.1-1:1	chr8	 10994408	 10996117	-	lnc-AF131215.4.1-1	lnc-AF131215.4.1-1:1	ENSG00000254556.1	AF131215.4	XKR6	NA	chr8:10984408-11006117	inner
CUST_16663_PI429285431	3.3847823	P	4.4041514	P	0.49333204241842	0	lncRNA	18365-1_{1..438}	lnc-DCAF4L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCAF4L2-1:1	chr8	 88938374	 88938811	-	lnc-DCAF4L2-1	lnc-DCAF4L2-1:1	XLOC_007145	linc-DCAF4L2	NA	NA	NA	inter
CUST_3107_PI429285431	1.5111246	A	2.595734	A	0.471519911530568	0	lncRNA	3087-1_{1..440}	"transcript_id ""ENST00000565668.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565668.2"" | genecode_v17"	chr8	 54955549	 54955988	-	ENSG00000260955.2	ENST00000565668.2	RP11-30L15.6	RP11-30L15.6-001	LYPLA1	"hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30chr8:54958938-54968189"	NA	inter
LNCA_21_P0013410	7.4018826	P	7.667416	P	0.831891107151167	0	lncRNA	ENST00000420313	NA	NA	NA	NA	XLOC_l2_013696	NA	ENST00000420313	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013696), lincRNA [TCONS_l2_00027263]"	chr7:2514419-2514360	hs|7p22.3	Agilent_HUMAN_G3V2	ENST00000420313	ENST00000420313	chr7	  2514360	  2514419	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37743_PI429285431	0.8963566	A	0.89492667	A	1.00099164330131	0	lncRNA	38837-1_{1..2006}	n346246|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1796|NULL|-1.5971500|-0.2538493	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346246|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1796|NULL|-1.5971500|-0.2538493	chr9	 38437693	 38439698	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005542	0.9034846	A	0.89957476	A	1.00271377019842	0	lncRNA	TCONS_00014006	NA	NA	NA	NA	XLOC_006645	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006645), lincRNA [TCONS_00014006]"	chr7:149930000-149929941	hs|7q36.1	Agilent_HUMAN_G3V2	TCONS_00014006	TCONS_00014006	chr7	149929941	149930000	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32089_PI429285431	0.8910093	A	0.8939441	A	0.997967819335362	0	lncRNA	33795-1_{1..1543}	n338652|CR615241|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1066|NULL|0.2937080|-0.4393384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n338652|CR615241|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1066|NULL|0.2937080|-0.4393384	chr19	 40804387	 40805929	-	NA	NA	NA	NA	NA	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-62.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90"	NA	inter
CUST_12204_PI429285431	1.90904	A	1.6279361	A	1.21512429956607	0	lncRNA	13805-1_{1..358}	lnc-ERICH1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERICH1-2:5	chr8	  1236982	  1237339	-	lnc-ERICH1-2	lnc-ERICH1-2:5	XLOC_006972	linc-ERICH1-7	NA	NA	NA	inter
CUST_2333_PI429285431	1.0470514	A	1.1039588	A	0.961322629313883	0	lncRNA	2325-1_{1..725}	"transcript_id ""ENST00000599562.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599562.1"" | genecode_v17"	chr5	120535399	120536123	+	ENSG00000229855.3	ENST00000599562.1	CTC-546K23.1	CTC-546K23.1-002	NA	NA	NA	inter
CUST_27628_PI429285431	0.8855625	A	0.88596255	A	0.999722744912714	0	lncRNA	29206-1_{1..822}	n324832|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171687|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171687|-1.1927700|-0.3817032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324832|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171687|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171687|-1.1927700|-0.3817032	chr21	 28384634	 28385455	+	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_12788_PI429285431	0.90236944	A	1.236444	A	0.793292843921577	0	lncRNA	14414-1_{1..480}	lnc-KCNN2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNN2-2:2	chr5	113441410	113441889	+	lnc-KCNN2-2	lnc-KCNN2-2:2	XLOC_004511	linc-KCNN2	NA	NA	NA	inter
CUST_37115_PI429285431	0.88960564	A	0.8894413	A	1.00011391829585	0	lncRNA	38240-1_{1..3000}	n345558|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1107|NULL|-1.3099300|-0.4299298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345558|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1107|NULL|-1.3099300|-0.4299298	chr2	186298823	186301822	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-95.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10"	NA	inter
CUST_44717_PI429285431	0.8946298	A	0.8988888	A	0.997052239361292	0	lncRNA	49272-1_{1..1267}	"gi|341915341|ref|XR_132517.1| PREDICTED: Homo sapiens uncharacterized LOC100287329 (LOC100287329), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915341|ref|XR_132517.1| PREDICTED: Homo sapiens uncharacterized LOC100287329 (LOC100287329), misc_RNA"	NA	NA	NA	NA	NA	XR_132517.1	NA	NA	NA	NA	NA	Unknown
CUST_30584_PI429285431	0.89799273	A	2.232103	A	0.39663660417669	0	lncRNA	32366-1_{1..225}	n335862|X58765|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322268|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322268|-1.1976700|-0.0266265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335862|X58765|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322268|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322268|-1.1976700|-0.0266265	chr14	 23007852	 23008076	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12651_PI429285431	0.9189413	A	0.9212966	A	0.998368762362388	0	lncRNA	14266-1_{1..560}	lnc-TMEM50B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM50B-1:1	chr21	 34856275	 34856834	-	lnc-TMEM50B-1	lnc-TMEM50B-1:1	XLOC_014060	linc-TMEM50B	TMEM50B	NA	chr21:34846275-34852316	inter
CUST_28309_PI429285431	5.8245473	P	5.9008384	P	0.948492913536601	0	lncRNA	29954-2_{3001..4900}	n325614|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000072281|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000072281|0.0485905|-0.3177811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325614|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000072281|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000072281|0.0485905|-0.3177811	chr14	 59459183	 59461082	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
CUST_35402_PI429285431	9.020512	P	9.553188	P	0.691271331331981	0	lncRNA	36813-1_{1..471}	n342462|AF147428|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4956|NULL|-0.3844960|-0.2344898	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342462|AF147428|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4956|NULL|-0.3844960|-0.2344898	chr16	 22433721	 22434191	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20"	NA	inter
CUST_44790_PI429285431	2.161186	A	3.1010387	P	0.521286101316704	0	lncRNA	49327-1_{1..1725}	"gi|311771616|ref|NR_037157.1| Homo sapiens BVES antisense RNA 1 (BVES-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|311771616|ref|NR_037157.1| Homo sapiens BVES antisense RNA 1 (BVES-AS1), non-coding RNA"	Chr6	105585562	105587286	+	154442	NR_037157.1	NA	NA	NA	NA	NA	inter
CUST_27923_PI429285431	4.0901847	P	4.310373	P	0.858453384120982	0	lncRNA	29524-1_{1..821}	n325167|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000109026|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000109026|-0.5429840|-0.2791825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325167|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000109026|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000109026|-0.5429840|-0.2791825	chr2	114051661	114052481	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33944_PI429285431	0.92324364	A	0.9289481	A	0.996053776519506	0	lncRNA	35484-1_{1..1798}	n340744|BC033564|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3207|NULL|-1.0069600|-0.2108000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340744|BC033564|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3207|NULL|-1.0069600|-0.2108000	chr5	173006645	173008442	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00807743	0.89908886	A	0.89279205	A	1.00437415490756	0	lncRNA	THC2734315	NA	NA	NA	NA	XLOC_l2_010751	NA	NA	THC2734315	NA	"BROAD Institute lincRNA (XLOC_l2_010751), lincRNA [TCONS_l2_00020645]"	chr4:090615178-090615237	hs|4q22.1	Agilent_HUMAN_G3V2	THC2734315	THC2734315	chr4	 90615178	 90615237	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20623_PI429285431	4.879871	P	4.641681	P	1.17951192135165	0	lncRNA	22262-1_{1..436}	lnc-ABCD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ABCD2-1:1	chr12	 40229483	 40229918	-	lnc-ABCD2-1	lnc-ABCD2-1:1	ENSG00000248865.1	AC121336.2	SLC2A13	NA	chr12:40219483-40239562	inner
CUST_20933_PI429285431	6.9527397	P	7.12055	P	0.890192777023474	0	lncRNA	22564-1_{1..150}	lnc-GPR19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR19-1:1	chr12	 12876835	 12876984	-	lnc-GPR19-1	lnc-GPR19-1:1	ENSG00000256658.1	RP11-180M15.4	APOLD1	NA	chr12:12878851-12886945	inter
CUST_19076_PI429285431	3.2991912	P	3.138104	P	1.118129431388	0	lncRNA	20767-1_{1..2744}	lnc-USP46-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP46-1:3	chr4	 53617510	 53620253	-	lnc-USP46-1	lnc-USP46-1:3	ENSG00000226887	AC104066.1	LOC100288413	NA	chr4:53609684-53617807	inner
CUST_8613_PI429285431	2.4254832	A	2.5747151	A	0.901730421834845	0	lncRNA	10166-1_{1..2961}	lnc-PRR7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRR7-1:1	chr5	176913183	176916143	+	lnc-PRR7-1	lnc-PRR7-1:1	ENSG00000245859	ENST00000499364	PDLIM7	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PDLIM7:range=chr5:176910645-1769235135'pad=0,hg19_refFlat_PDLIM7:range=chr5:176910645-1769235135'pad=0 3'pad=0 strand=- repeatMasking=none,-99.20chr5:176910395-176923252"	NA	inner
CUST_32110_PI429285431	1.4177232	A	2.772153	A	0.391089362257642	0	lncRNA	33812-2_{3001..3305}	n338674|AF245388|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1088|NULL|16.5225000|-0.0727392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338674|AF245388|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1088|NULL|16.5225000|-0.0727392	chr2	 11677241	 11677545	+	NA	NA	NA	NA	GREB1	NA	chr2:11674242-11761152	inner
CUST_148_PI429201921	1.4724878	A	1.68973	A	0.860208206522508	0	lncRNA	129-2_{3001..3934}	TC09001989.hg.1	TCONS_l2_00028819-XLOC_l2_014837 // Broad TUCP // linc-CBWD3-5 chr9:+:70707657-70711592 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:+:70707657-70711592	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00028819-XLOC_l2_014837	linc-CBWD3-5	chr9	 70707657	 70711592	+	NA	NA	NA	NA	PRDM16	NA	chr1:2985742-2988596	Unknown
CUST_19161_PI429285431	0.90384865	A	1.1520504	A	0.841945205700522	0	lncRNA	20830-4_{9001..9848}	lnc-GPR125-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-GPR125-2:1	chr4	 21853963	 21854810	-	lnc-GPR125-2	lnc-GPR125-2:1	UM9-5	NCRNA00099	KCNIP4	NA	chr4:21834963-21864811	inner
CUST_2932_PI429285431	1.4323351	A	0.99945956	A	1.34992152358697	0	lncRNA	2913-1_{1..2902}	"transcript_id ""ENST00000562524.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562524.1"" | genecode_v17"	chr7	130121332	130124233	-	ENSG00000259920.1	ENST00000562524.1	RP11-2E11.5	RP11-2E11.5-001	MEST	NA	chr7:130126046-130134233	inter
CUST_45037_PI429285431	2.1044517	A	2.0782778	A	1.01830793746944	0	lncRNA	49534-1_{1..1131}	"gi|410170528|ref|XR_108794.3| PREDICTED: Homo sapiens uncharacterized LOC100506312 (LOC100506312), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170528|ref|XR_108794.3| PREDICTED: Homo sapiens uncharacterized LOC100506312 (LOC100506312), misc_RNA"	NA	NA	NA	NA	NA	XR_108794.3	NA	NA	NA	NA	NA	Unknown
CUST_36166_PI429285431	3.7246618	P	3.8518867	P	0.915590944917989	0	lncRNA	37439-1_{1..1501}	n344727|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_276|NULL|-1.3947300|-0.3094406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344727|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_276|NULL|-1.3947300|-0.3094406	chr11	 35080722	 35082222	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48004_PI429285431	0.91815734	A	1.3289329	A	0.752218889249611	0	lncRNA	51889-1_{1..2973}	"gi|410173247|ref|XR_172167.1| PREDICTED: Homo sapiens FLJ27243 protein (FLJ27243), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173247|ref|XR_172167.1| PREDICTED: Homo sapiens FLJ27243 protein (FLJ27243), misc_RNA"	NA	NA	NA	NA	NA	XR_172167.1	NA	NA	NA	"hg19_refFlat_BEAN1:range=chr16:66511501-665269685'pad=0,hg19_refFlat_BEAN1:range=chr16:66511501-665269685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10"	NA	Unknown
CUST_52203_PI429285431	6.825426	P	7.0467105	P	0.857801355001457	0	lncRNA	55719-1_{1..618}	hg19_lincRNAsTranscripts_TCONS_l2_00018033 range=chr22:35590411-35627006 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018033 range=chr22:35590411-35627006 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 35590411	 35591028	-	NA	NA	NA	NA	NA	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90"	NA	inter
CUST_9811_PI429285431	0.9071999	A	1.023971	A	0.922249431681567	0	lncRNA	11327-1_{1..248}	lnc-STIM2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STIM2-2:1	chr4	 27751714	 27751961	+	lnc-STIM2-2	lnc-STIM2-2:1	XLOC_003485	linc-PCDH7-8	NA	NA	NA	inter
CUST_12233_PI429285431	1.1659026	A	0.9170413	A	1.18826885997465	0	lncRNA	13839-1_{1..495}	lnc-FRRS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-FRRS1-1:1	chr1	 99999549	100000043	-	lnc-FRRS1-1	lnc-FRRS1-1:1	XLOC_000935	linc-LPPR5-2	NA	NA	NA	inter
CUST_49942_PI429285431	1.3109874	A	1.2380766	A	1.05183674346491	0	lncRNA	53692-1_{1..1294}	hg19_lincRNAsTranscripts_TCONS_l2_00026181 range=chr7:125077908-125121652 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026181 range=chr7:125077908-125121652 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	125077908	125079201	+	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-64.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30"	NA	inter
CUST_35210_PI429285431	5.2267613	P	5.958151	P	0.602323436242201	0	lncRNA	36610-1_{1..395}	n342196|AF348997|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4686|NULL|-0.7020090|-0.2895320	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342196|AF348997|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4686|NULL|-0.7020090|-0.2895320	chr16	 56710027	 56710421	+	NA	NA	NA	NA	NUP93	NA	chr16:56720754-56721789	inter
CUST_49745_PI429285431	0.8972113	A	0.8988186	A	0.99888652491063	0	lncRNA	53515-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026541 range=chr7:45763425-45808571 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026541 range=chr7:45763425-45808571 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 45763425	 45766424	-	NA	NA	NA	NA	ADCY1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40chr7:45753425-45762715"	NA	inter
CUST_27516_PI429285431	0.89780736	A	0.89705265	A	1.00052326196244	0	lncRNA	29087-1_{1..473}	n324695|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320625|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320625|-1.1688000|-0.3139848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324695|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320625|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320625|-1.1688000|-0.3139848	chr22	 25869438	 25869910	+	NA	NA	NA	NA	NA	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60"	NA	inter
CUST_7993_PI429285431	5.4922957	P	5.2392855	P	1.19169099992028	0	lncRNA	9604-1_{1..434}	lnc-USP34-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP34-1:2	chr2	 61371908	 61372341	-	lnc-USP34-1	lnc-USP34-1:2	ENSG00000212978	XLOC_002111	KIAA1841	NA	chr2:61361908-61365169	inter
CUST_17369_PI429285431	0.90474117	A	1.031222	A	0.916063282762216	0	lncRNA	19089-1_{1..389}	lnc-OR2J3-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR2J3-7:1	chr6	 29096434	 29096822	+	lnc-OR2J3-7	lnc-OR2J3-7:1	XLOC_005228	linc-OR2J2	NA	NA	NA	inter
CUST_1921_PI429285431	1.4011995	A	2.255663	A	0.553070960835961	0	lncRNA	1912-1_{1..303}	"transcript_id ""ENST00000506416.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506416.1"" | genecode_v17"	chr4	139845084	139845386	-	ENSG00000250577.1	ENST00000506416.1	RP11-577B7.1	RP11-577B7.1-001	NA	NA	NA	inter
CUST_42541_PI429285431	0.9051395	A	1.2369236	A	0.794553296478683	0	lncRNA	45346-1_{1..150}	ENST00000391231 ncrna:snoRNA chromosome:GRCh37:12:31229801:31229950:-1 gene:ENSG00000212533 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391231 ncrna:snoRNA chromosome:GRCh37:12:31229801:31229950:-1 gene:ENSG00000212533 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 31229801	 31229950	-	ENSG00000212533	ENST00000391231	NA	NA	DDX11	NA	chr12:31226779-31239950	inner
CUST_8260_PI429285431	0.91836625	A	0.90209067	A	1.0113452470424	0	lncRNA	9849-1_{1..2795}	lnc-NKX6-1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NKX6-1-2:1	chr4	 85214373	 85217167	-	lnc-NKX6-1-2	lnc-NKX6-1-2:1	ENSG00000250546	RP11-8L2.1	NA	NA	NA	inter
CUST_24906_PI429285431	7.079426	P	7.4317803	P	0.783304797731714	0	lncRNA	26447-1_{1..250}	lnc-CYB561D2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYB561D2-1:1	chr3	 50383002	 50383251	+	lnc-CYB561D2-1	lnc-CYB561D2-1:1	ENSG00000235058.1	ZMYND10-AS1	ZMYND10	NA	chr3:50378537-50383156	inner
CUST_26029_PI429285431	1.095164	A	0.98060465	A	1.08264431722309	0	lncRNA	27548-1_{1..347}	lnc-EXTL3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-EXTL3-3:1	chr8	 28813368	 28813714	+	lnc-EXTL3-3	lnc-EXTL3-3:1	ENSG00000259196.1	AC108449.2	HMBOX1	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30chr8:28803368-28823472"	NA	inner
CUST_5923_PI429285431	4.0237637	P	4.4484663	P	0.744992289912791	0	lncRNA	5851-1_{1..1603}	"transcript_id ""ENST00000586209.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586209.1"" | genecode_v17"	chr17	 58042457	 58044059	+	ENSG00000267302.1	ENST00000586209.1	RP11-178C3.2	RP11-178C3.2-001	RNFT1	"hg19_refFlat_DHX40:range=chr17:57643033-576845335'pad=0,hg19_refFlat_DHX40:range=chr17:57643033-576845335'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90chr17:58032457-58042117"	NA	inter
CUST_34154_PI429285431	0.9202036	A	0.904097	A	1.01122679712265	0	lncRNA	35672-1_{1..2059}	n340997|AY054401|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3463|NULL|-1.0208300|-0.2639951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340997|AY054401|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3463|NULL|-1.0208300|-0.2639951	chr11	 27528398	 27530456	+	NA	NA	NA	NA	LIN7C	"hg19_refFlat_BDNF:range=chr11:27679368-277429615'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277429615'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BDNF:range=chr11:27679368-277209525'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277209525'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BDNF:range=chr11:27679368-277225835'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277225835'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BDNF:range=chr11:27679368-276958315'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-276958315'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BDNF:range=chr11:27679368-276801115'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-276801115'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00chr11:27518398-27528326"	NA	inter
LNCA_21_P0005369	2.3668952	A	2.2409081	A	1.09125411945497	0	lncRNA	TCONS_00013406	NA	NA	NA	NA	XLOC_006035	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006035), lincRNA [TCONS_00013406]"	chr7:30452098-30452157	hs|7p14.3	Agilent_HUMAN_G3V2	TCONS_00013406	TCONS_00013406	chr7	 30452098	 30452157	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50454_PI429285431	8.774618	P	8.72432	P	1.03547878803528	0	lncRNA	54160-1_{1..1348}	hg19_lincRNAsTranscripts_TCONS_l2_00030250 range=chrX:73164172-73183329 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030250 range=chrX:73164172-73183329 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 73164172	 73165519	+	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-96.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30"	NA	inter
CUST_7504_PI429285431	1.7686244	A	0.90631175	A	1.81795016267357	0	lncRNA	9145-1_{1..2086}	lnc-CTH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTH-1:1	chr1	 71250869	 71252954	+	lnc-CTH-1	lnc-CTH-1:1	ENSG00000229051	RP5-952N6.1	NA	NA	NA	inter
CUST_41866_PI429285431	4.5118756	P	5.2324915	P	0.606838321938361	0	lncRNA	43526-1_{1..83}	ENST00000410377 ncrna:miRNA chromosome:GRCh37:10:32635792:32635874:-1 gene:ENSG00000222309 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410377 ncrna:miRNA chromosome:GRCh37:10:32635792:32635874:-1 gene:ENSG00000222309 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 32635792	 32635874	-	ENSG00000222309	ENST00000410377	NA	NA	EPC1	NA	chr10:32625792-32636113	inner
CUST_309_PI429285431	2.4137933	A	1.5578343	A	1.80996148767712	0	lncRNA	301-1_{1..3000}	"transcript_id ""ENST00000484933.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000484933.2"" | genecode_v17"	chr1	 87597686	 87600685	+	ENSG00000267272.1	ENST00000484933.2	RP5-1052I5.1	RP5-1052I5.1-005	NA	NA	NA	inter
CUST_25892_PI429285431	1.456984	A	0.9032045	A	1.46792626257452	0	lncRNA	27411-1_{1..382}	lnc-PTDSS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTDSS1-1:1	chr8	 97250135	 97250516	+	lnc-PTDSS1-1	lnc-PTDSS1-1:1	ENSG00000254224.1	KB-1043D8.6	MTERFD1	NA	chr8:97251645-97260262	inter
CUST_33036_PI429285431	0.9223356	A	0.91331744	A	1.00627048990098	0	lncRNA	34650-1_{1..1179}	n339723|BC047656|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2168|NULL|0.4774370|-0.1907181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n339723|BC047656|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2168|NULL|0.4774370|-0.1907181	chr20	 55841852	 55843030	+	NA	NA	NA	NA	BMP7	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.60chr20:55831852-55841707"	NA	inter
CUST_12674_PI429285431	2.8805985	A	0.93527186	A	3.85124963357442	0	lncRNA	14291-1_{1..363}	lnc-NTM-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTM-4:1	chr11	131064050	131064412	+	lnc-NTM-4	lnc-NTM-4:1	XLOC_009337	linc-NTM-4	NA	NA	NA	inter
CUST_46839_PI429285431	7.655014	P	7.8015137	P	0.903439752058917	0	lncRNA	50976-1_{1..536}	"gi|397139650|ref|XR_158915.1| PREDICTED: Homo sapiens uncharacterized LOC100996563 (LOC100996563), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139650|ref|XR_158915.1| PREDICTED: Homo sapiens uncharacterized LOC100996563 (LOC100996563), misc_RNA"	NA	NA	NA	NA	NA	XR_158915.1	NA	NA	NA	NA	NA	Unknown
CUST_36133_PI429285431	0.9143881	A	0.9033309	A	1.00769371267768	0	lncRNA	37419-1_{1..1676}	n344706|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_255|NULL|-1.3240300|-0.4153341	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344706|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_255|NULL|-1.3240300|-0.4153341	chr6	 27672902	 27674577	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9679_PI429285431	4.375175	P	4.6982465	P	0.799366212762538	0	lncRNA	11196-1_{1..424}	lnc-CD93-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD93-1:1	chr20	 23051887	 23052310	-	lnc-CD93-1	lnc-CD93-1:1	XLOC_013688	linc-THBD	CD93	NA	chr20:23059993-23062105	inter
CUST_51849_PI429285431	8.114365	P	7.6967964	P	1.33567462031082	0	lncRNA	55404-1_{1..425}	hg19_lincRNAsTranscripts_TCONS_l2_00013129 range=chr19:43882723-43883356 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013129 range=chr19:43882723-43883356 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 43882723	 43883147	-	NA	NA	NA	NA	TEX101	NA	chr19:43875887-43893356	inter
CUST_49562_PI429285431	4.0171547	P	3.5871756	P	1.34721405993591	0	lncRNA	53352-1_{1..578}	hg19_lincRNAsTranscripts_TCONS_l2_00024370 range=chr6:109649975-109658685 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024370 range=chr6:109649975-109658685 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	109649975	109650552	+	NA	NA	NA	NA	LOC100506339	NA	chr6:109648378-109668685	inter
CUST_22530_PI429285431	0.9249794	A	0.91717136	A	1.00542679289499	0	lncRNA	24118-1_{1..644}	lnc-AC012123.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC012123.1.1-1:2	chr18	 30435135	 30435778	+	lnc-AC012123.1.1-1	lnc-AC012123.1.1-1:2	ENSG00000263765.1	RP11-746B8.1	NA	NA	NA	inter
CUST_42727_PI429285431	8.923487	P	9.023538	P	0.933000008931226	0	lncRNA	45670-1_{1..95}	ENST00000383953 ncrna:snoRNA chromosome:GRCh37:1:93302846:93302940:1 gene:ENSG00000206680 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000383953 ncrna:snoRNA chromosome:GRCh37:1:93302846:93302940:1 gene:ENSG00000206680 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 93302846	 93302940	+	ENSG00000206680	ENST00000383953	NA	NA	FAM69A	NA	chr1:93307721-93312940	inner
LNCA_33_P3509233	0.91130084	A	0.9234465	A	0.991616608284923	0	lncRNA	XR_109995	XR_109995	XR_109995	   285286	Hs.559386	LOC285286	uncharacterized LOC285286	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC285286 (LOC285286), miscRNA [XR_109995]"	chr3:72084729-72084670	hs|3p13	Agilent_HUMAN_G3V2	XR_109995	XR_109995	chr3	 72084670	 72084729	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31694_PI429285431	8.873246	P	8.8492775	P	1.01675247313763	0	lncRNA	33438-2_{3001..3542}	n338219|D87461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|611|NULL|2.8992100|-0.2654108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338219|D87461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|611|NULL|2.8992100|-0.2654108	chr14	 23779035	 23779576	+	NA	NA	NA	NA	PABPN1	NA	chr14:23789397-23790958	inner
CUST_31548_PI429285431	0.91179967	A	0.9127791	A	0.999321341250038	0	lncRNA	33307-1_{1..3000}	n338038|BX649027|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|425|NULL|0.2569890|-0.3455936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338038|BX649027|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|425|NULL|0.2569890|-0.3455936	chr22	 34486266	 34489265	+	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-32.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50"	NA	inter
CUST_35112_PI429285431	1.3251375	A	0.9019881	A	1.34085143785563	0	lncRNA	36518-1_{1..2415}	n342081|CR624925|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4563|NULL|2.3650000|-0.3584345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342081|CR624925|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4563|NULL|2.3650000|-0.3584345	chr6	 87540308	 87542722	-	NA	NA	NA	NA	HTR1E	NA	chr6:87647024-87657370	inner
CUST_22197_PI429285431	3.9441288	P	3.7731338	P	1.12583468428432	0	lncRNA	23797-1_{1..552}	lnc-VCAN-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VCAN-1:4	chr5	 83683640	 83684191	+	lnc-VCAN-1	lnc-VCAN-1:4	ENSG00000250320.1	CTD-2269F5.1	EDIL3	NA	chr5:83673640-83680611	inter
CUST_26019_PI429285431	0.9121423	A	0.9131306	A	0.999315197225975	0	lncRNA	27538-1_{1..738}	lnc-LMBR1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>lnc-LMBR1-2:1	chr7	156433230	156433967	-	lnc-LMBR1-2	lnc-LMBR1-2:1	ENSG00000182648.7	AC073871.2	RNF32	NA	chr7:156433353-156443286	inter
CUST_50958_PI429285431	0.9030164	A	0.89880985	A	1.00292001323001	0	lncRNA	54599-1_{1..636}	hg19_lincRNAsTranscripts_TCONS_l2_00006327 range=chr12:74677405-74686462 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006327 range=chr12:74677405-74686462 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 74677405	 74678040	-	NA	NA	NA	NA	NA	"hg19_refFlat_VENTX:range=chr10:135051419-1350538105'pad=0,hg19_refFlat_VENTX:range=chr10:135051419-1350538105'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20"	NA	inter
CUST_46655_PI429285431	2.6374617	A	0.9015909	A	3.33080478122297	0	lncRNA	50827-1_{1..3000}	"gi|388454231|ref|NR_049763.1| Homo sapiens CCR4-NOT transcription complex, subunit 1 (CNOT1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388454231|ref|NR_049763.1| Homo sapiens CCR4-NOT transcription complex, subunit 1 (CNOT1), transcript variant 4, non-coding RNA"	Chr16	 58553850	 58556849	-	23019	NR_049763.1	NA	NA	NA	NA	NA	inter
CUST_1611_PI429285431	0.90331686	A	1.9847528	A	0.4725582435998	0	lncRNA	1597-1_{1..672}	"transcript_id ""ENST00000444729.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444729.1"" | genecode_v17"	chr3	191747669	191748340	+	ENSG00000232353.1	ENST00000444729.1	RP11-655G22.1	RP11-655G22.1-002	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20"	NA	inter
CUST_102_PI429285431	1.4724321	A	0.92587066	A	1.46060030809156	0	lncRNA	94-1_{1..457}	"transcript_id ""ENST00000496488.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000496488.1"" | genecode_v17"	chr1	   160446	   160902	+	ENSG00000241599.1	ENST00000496488.1	RP11-34P13.9	RP11-34P13.9-001	NA	NA	NA	inter
LNCA_21_P0003917	0.9176055	A	1.7203783	A	0.573246362335526	0	lncRNA	CR936814	NA	CR936814	NA	Hs.519127	XLOC_004207	NA	NA	THC2523050	NA	"BROAD Institute lincRNA (XLOC_004207), lincRNA [TCONS_00009192]"	chr4:185427690-185427631	hs|4q35.1	Agilent_HUMAN_G3V2	CR936814	CR936814	chr4	185427631	185427690	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12824_PI429285431	0.9114771	A	0.9118469	A	0.999743707021287	0	lncRNA	14451-1_{1..371}	lnc-REG1B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-REG1B-4:1	chr2	 78826188	 78826558	-	lnc-REG1B-4	lnc-REG1B-4:1	XLOC_002175	linc-LRRTM4-4	NA	NA	NA	inter
CUST_29036_PI429285431	6.5071135	P	6.5182385	P	0.992318393123954	0	lncRNA	30765-1_{1..592}	n326526|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029386|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029386|-1.1204900|-0.3132420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326526|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029386|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029386|-1.1204900|-0.3132420	chr1	 94556622	 94557213	-	NA	NA	NA	NA	ABCA4	NA	chr1:94546622-94572713	inner
LNCA_19_P00810988	5.8168597	P	5.6542115	P	1.11933990525627	0	lncRNA	TCONS_l2_00007006	NA	NA	NA	NA	XLOC_l2_003856	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003856), lincRNA [TCONS_l2_00007006]"	chr13:111464974-111465033	hs|13q34	Agilent_HUMAN_G3V2	TCONS_l2_00007006	TCONS_l2_00007006	chr13	111464974	111465033	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7146_PI429285431	1.2259728	A	0.8983977	A	1.25490234522521	0	lncRNA	7081-1_{1..540}	"transcript_id ""ENST00000435111.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435111.1"" | genecode_v17"	chrY	 16388092	 16388631	-	ENSG00000223517.1	ENST00000435111.1	AC010723.1	AC010723.1-001	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.00"	NA	inter
CUST_6138_PI429285431	0.90466624	A	0.9024459	A	1.00154020731366	0	lncRNA	6064-1_{1..471}	"transcript_id ""ENST00000577674.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577674.1"" | genecode_v17"	chr18	 26858474	 26858944	-	ENSG00000265980.1	ENST00000577674.1	CTD-2515C13.2	CTD-2515C13.2-001	NA	NA	NA	inter
CUST_19441_PI429285431	4.325982	P	4.5427127	P	0.860513242925638	0	lncRNA	21101-1_{1..469}	lnc-PSD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PSD2-1:1	chr5	139235748	139236216	+	lnc-PSD2-1	lnc-PSD2-1:1	ENSG00000250692.1	CTB-35F21.4	NRG2	"hg19_refFlat_NRG2:range=chr5:139227502-1394226545'pad=0,hg19_refFlat_NRG2:range=chr5:139227502-1394226545'pad=0 3'pad=0 strand=- repeatMasking=none,-110.30chr5:139226364-139245974"	NA	inner
CUST_11419_PI429285431	0.8909649	A	0.89194834	A	0.99931856362005	0	lncRNA	12986-1_{1..408}	lnc-WDR48-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR48-1:2	chr3	 38866675	 38867082	+	lnc-WDR48-1	lnc-WDR48-1:2	XLOC_002615	linc-WDR48	NA	NA	NA	inter
CUST_2909_PI429285431	0.8972073	A	0.90671754	A	0.993429683500153	0	lncRNA	2890-1_{1..784}	"transcript_id ""ENST00000460471.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000460471.1"" | genecode_v17"	chr7	114758266	114759049	+	ENSG00000225535.2	ENST00000460471.1	AC068610.3	AC068610.3-003	NA	NA	NA	inter
CUST_50566_PI429285431	5.3928356	P	5.511154	P	0.921260843277859	0	lncRNA	54258-1_{1..223}	hg19_lincRNAsTranscripts_TCONS_l2_00030903 range=chrY:16020072-16021228 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030903 range=chrY:16020072-16021228 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrY	 16020072	 16020294	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23233_PI429285431	0.89492494	A	0.8992292	A	0.99702096048722	0	lncRNA	24805-1_{1..745}	lnc-TSHZ2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSHZ2-5:1	chr20	 51263029	 51263773	+	lnc-TSHZ2-5	lnc-TSHZ2-5:1	ENSG00000234948.1	RP4-723E3.1	NA	NA	NA	inter
CUST_16181_PI429285431	1.6941782	A	2.46522	A	0.585994163258846	0	lncRNA	17886-1_{1..778}	lnc-TRIML1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIML1-1:2	chr4	189081655	189082432	+	lnc-TRIML1-1	lnc-TRIML1-1:2	XLOC_003832	linc-FRG1-12	NA	NA	NA	inter
CUST_14284_PI429285431	0.92687434	A	1.7959174	A	0.547509893670235	0	lncRNA	15943-1_{1..361}	lnc-FLNB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FLNB-2:1	chr3	 57970072	 57970432	+	lnc-FLNB-2	lnc-FLNB-2:1	XLOC_002673	linc-FLNB	NA	NA	NA	inter
CUST_39642_PI429285431	0.902911	A	0.91022503	A	0.994943129963049	0	lncRNA	40580-2_{3001..3456}	n405217|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000257046||0.0387311|-0.2929499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405217|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000257046||0.0387311|-0.2929499	chr20	 30687321	 30687776	-	NA	NA	NA	NA	HCK	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20chr20:30674321-30689659"	NA	inner
CUST_9516_PI429285431	6.7373505	P	7.039771	P	0.810890772102216	0	lncRNA	11024-2_{3001..4437}	lnc-ITPR3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ITPR3-1:3	chr6	 33895111	 33896547	+	lnc-ITPR3-1	lnc-ITPR3-1:3	XLOC_005263	linc-HMGA1-2	NA	NA	NA	inter
CUST_13795_PI429285431	2.199437	A	2.7760184	A	0.670550828835102	0	lncRNA	15437-1_{1..260}	lnc-AURKA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AURKA-1:1	chr20	 54874475	 54874734	-	lnc-AURKA-1	lnc-AURKA-1:1	XLOC_013808	linc-CBLN4-2	NA	NA	NA	inter
CUST_24581_PI429285431	4.354938	P	4.545814	P	0.876073610577434	0	lncRNA	26130-1_{1..260}	lnc-USP10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-USP10-2:1	chr16	 84862617	 84862876	+	lnc-USP10-2	lnc-USP10-2:1	ENSG00000260859.1	RP11-254F19.2	CRISPLD2	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30chr16:84853587-84872848"	NA	inner
CUST_10553_PI429285431	3.2533174	P	2.4187655	A	1.78330306021607	0	lncRNA	12084-1_{1..2543}	lnc-SECTM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SECTM1-1:1	chr17	 80314989	 80317531	-	lnc-SECTM1-1	lnc-SECTM1-1:1	XLOC_012592	linc-SECTM1-2	TEX19	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80chr17:80317123-80321652"	NA	inter
CUST_14957_PI429285431	0.89629763	A	0.8960455	A	1.00017477847061	0	lncRNA	16621-1_{1..399}	lnc-GPR158-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR158-2:1	chr10	 25975302	 25975700	+	lnc-GPR158-2	lnc-GPR158-2:1	XLOC_008416	linc-MYO3A-3	NA	NA	NA	inter
CUST_7673_PI429285431	0.92983615	A	0.9327853	A	0.997957892936102	0	lncRNA	9306-1_{1..2701}	lnc-SCAND1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SCAND1-3:1	chr20	 34743518	 34746218	-	lnc-SCAND1-3	lnc-SCAND1-3:1	ENSG00000232406	RP11-234K24.3	EPB41L1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10chr20:34733518-34753655"	NA	inner
LNCA_21_P0011181	6.880825	P	6.825738	P	1.03892175234312	0	lncRNA	ENST00000451826	NA	NA	NA	NA	XLOC_l2_003944	NA	ENST00000451826	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003944), lincRNA [TCONS_l2_00007126]"	chr13:38635551-38633805	hs|13q13.3	Agilent_HUMAN_G3V2	ENST00000451826	ENST00000451826	chr13	 38633805	 38635551	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25740_PI429285431	5.4209623	P	5.1489534	P	1.2074880404692	0	lncRNA	27266-1_{1..2455}	lnc-C12orf43-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C12orf43-1:4	chr12	121407641	121410095	-	lnc-C12orf43-1	lnc-C12orf43-1:4	ENSG00000241388.2	HNF1A-AS1	HNF1A	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.01;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40chr12:121416549-121420095"	NA	inter
CUST_40039_PI429285431	1.1947932	A	0.9090647	A	1.2190256647079	0	lncRNA	40893-1_{1..3000}	n407231|NR_026699|lncRNA|Homosapiens||RefGeneNoncode|NR_026699||7.0238500|-0.1693178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407231|NR_026699|lncRNA|Homosapiens||RefGeneNoncode|NR_026699||7.0238500|-0.1693178	chr3	 52321835	 52324834	+	NA	NA	NA	NA	WDR82	NA	chr3:52311835-52312659	inter
CUST_15556_PI429285431	8.019268	P	8.539181	P	0.697413888618079	0	lncRNA	17240-2_{3001..4154}	lnc-SAP30-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SAP30-2:1	chr4	174434483	174435636	+	lnc-SAP30-2	lnc-SAP30-2:1	XLOC_003782	linc-KIAA1712-5	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20"	NA	inter
CUST_22665_PI429285431	2.3896954	A	3.08375	P	0.618114236967727	0	lncRNA	24249-1_{1..465}	lnc-BEND2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BEND2-2:1	chrX	 17855657	 17856121	-	lnc-BEND2-2	lnc-BEND2-2:1	ENSG00000248906.1	RP3-389A20.4	RAI2	NA	chrX:17845657-17865852	inner
CUST_22275_PI429285431	0.997265	A	2.8986876	A	0.267679284626333	0	lncRNA	23876-1_{1..2278}	lnc-ABCC6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ABCC6-1:1	chr16	 16386809	 16389086	-	lnc-ABCC6-1	lnc-ABCC6-1:1	ENSG00000263198.1	RP11-517A5.4	NOMO3	"hg19_refFlat_NOMO3:range=chr16:16326524-163881565'pad=0,hg19_refFlat_NOMO3:range=chr16:16326524-163881565'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.30;hg19_refFlat_NOMO2:range=chr16:18511228-185733625'pad=0,hg19_refFlat_NOMO2:range=chr16:18511228-185733625'pad=0 3'pad=0 strand=- repeatMasking=none,-101.30;hg19_refFlat_NOMO2:range=chr16:18511694-185733625'pad=0,hg19_refFlat_NOMO2:range=chr16:18511694-185733625'pad=0 3'pad=0 strand=- repeatMasking=none,-101.30;hg19_refFlat_NOMO1:range=chr16:14927709-149895025'pad=0,hg19_refFlat_NOMO1:range=chr16:14927709-149895025'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.80chr16:16376809-16388668"	NA	inner
CUST_35489_PI429285431	0.9043983	A	0.91028017	A	0.99593129808102	0	lncRNA	36897-1_{1..2535}	n342587|AK096048|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5087|NULL|-1.0965600|-0.3450382	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342587|AK096048|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5087|NULL|-1.0965600|-0.3450382	chr10	 26984019	 26986553	-	NA	NA	NA	NA	PDSS1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00chr10:26986595-26996554"	NA	inter
CUST_29496_PI429285431	1.5707111	A	1.599539	A	0.980216338992178	0	lncRNA	31254-1_{1..423}	n332924|AF086463|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067342|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067342|-0.9236960|-0.3982845	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n332924|AF086463|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067342|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067342|-0.9236960|-0.3982845	chr18	 19410554	 19410976	-	NA	NA	NA	NA	MIB1	NA	chr18:19400554-19421359	inner
CUST_50879_PI429285431	1.1468608	A	1.4976372	A	0.784161980127207	0	lncRNA	54522-1_{1..1082}	hg19_lincRNAsTranscripts_TCONS_l2_00005280 range=chr11:133778555-133783562 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005280 range=chr11:133778555-133783562 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	133778555	133779636	-	NA	NA	NA	NA	IGSF9B	NA	chr11:133785185-133793562	inter
LNCA_21_P0014062	0.90102345	A	0.89628965	A	1.00328660921874	0	lncRNA	ENST00000423879	XR_108315	XR_108315	NA	NA	LOC100506206	NA	ENST00000423879	THC2645023	NA	"PREDICTED: Homo sapiens hypothetical LOC100506206, transcript variant 1 (LOC100506206), miscRNA [XR_108315]"	chr1:179711769-179711828	hs|1q25.2	Agilent_HUMAN_G3V2	ENST00000423879	ENST00000423879	chr1	179711769	179711828	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25041_PI429285431	2.440989	A	2.5926049	P	0.900241576256206	0	lncRNA	26580-1_{1..1207}	lnc-TMED5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMED5-1:1	chr1	 93811281	 93812487	-	lnc-TMED5-1	lnc-TMED5-1:1	ENSG00000223745.1	RP4-717I23.3	DR1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0,hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10chr1:93811478-93821582"	NA	inner
CUST_22284_PI429285431	0.9224762	A	0.92406416	A	0.998899915540203	0	lncRNA	23884-1_{1..577}	lnc-SLC38A8-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC38A8-2:2	chr16	 83839228	 83839804	-	lnc-SLC38A8-2	lnc-SLC38A8-2:2	ENSG00000260228.1	RP11-483P21.2	CDH13	NA	chr16:83829228-83830215	inter
CUST_36467_PI429285431	1.1685772	A	0.884291	A	1.21780758181473	0	lncRNA	37675-1_{1..3000}	n344975|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_524|NULL|-1.4011800|-0.3524123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344975|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_524|NULL|-1.4011800|-0.3524123	chr7	140419592	140422591	-	NA	NA	NA	NA	BRAF	NA	chr7:140433812-140436316	inter
CUST_51298_PI429285431	5.1985846	P	3.4184296	P	3.43463073514355	0	lncRNA	54902-1_{1..2089}	hg19_lincRNAsTranscripts_TCONS_l2_00008990 range=chr15:32809622-32827703 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008990 range=chr15:32809622-32827703 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 32809622	 32811710	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20"	NA	inter
CUST_45934_PI429285431	8.1353855	P	7.721614	P	1.33216381477429	0	lncRNA	50239-1_{1..3000}	"gi|214010186|ref|NR_024515.1| Homo sapiens amyloid beta (A4) precursor-like protein 2 (APLP2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|214010186|ref|NR_024515.1| Homo sapiens amyloid beta (A4) precursor-like protein 2 (APLP2), transcript variant 5, non-coding RNA"	Chr11	129939716	129942715	+	334	NR_024515.1	NA	NA	NA	NA	NA	inter
CUST_5937_PI429285431	5.287142	P	5.532857	P	0.843397704435647	0	lncRNA	5866-1_{1..432}	"transcript_id ""ENST00000584047.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584047.1"" | genecode_v17"	chr17	 66092243	 66092674	-	ENSG00000265055.1	ENST00000584047.1	AC145343.2	AC145343.2-002	NA	NA	NA	inter
CUST_18101_PI429285431	2.317992	A	1.0821757	A	2.35514567671993	0	lncRNA	19836-1_{1..3000}	lnc-KCNA5-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNA5-3:3	chr12	  5631015	  5634014	+	lnc-KCNA5-3	lnc-KCNA5-3:3	XLOC_009628	linc-CD9-4	NA	NA	NA	inter
CUST_50830_PI429285431	11.080732	P	10.976794	P	1.07470298636769	0	lncRNA	54478-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00004568 range=chr11:65266283-65273709 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004568 range=chr11:65266283-65273709 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65266283	 65269282	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50948_PI429285431	10.181522	P	8.69115	P	2.80961411919373	0	lncRNA	54589-1_{1..2097}	hg19_lincRNAsTranscripts_TCONS_l2_00005705 range=chr12:56904734-56906923 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005705 range=chr12:56904734-56906923 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 56904734	 56906830	+	NA	NA	NA	NA	RBMS2	NA	chr12:56904725-56916923	inter
CUST_3389_PI429285431	0.88938254	A	1.9833592	A	0.468468302280958	0	lncRNA	3362-2_{3001..3528}	"transcript_id ""ENST00000566968.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566968.1"" | genecode_v17"	chr9	 33700457	 33700984	+	ENSG00000260947.1	ENST00000566968.1	RP11-384P7.7	RP11-384P7.7-001	NA	NA	NA	inter
CUST_9883_PI429285431	4.732097	P	5.281672	P	0.683221367244381	0	lncRNA	11407-1_{1..1242}	lnc-ANTXRL-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANTXRL-1:9	chr10	 47700835	 47702076	+	lnc-ANTXRL-1	lnc-ANTXRL-1:9	XLOC_008480	linc-ANXA8L2-1	NA	NA	NA	inter
CUST_50755_PI429285431	1.4465911	A	0.8845627	A	1.47634346777885	0	lncRNA	54419-1_{1..239}	hg19_lincRNAsTranscripts_TCONS_l2_00004704 range=chr11:88071105-88132877 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004704 range=chr11:88071105-88132877 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 88071105	 88071343	+	NA	NA	NA	NA	CTSC	NA	chr11:88061105-88070941	inter
CUST_40334_PI429285431	11.924373	P	12.19699	P	0.827816551815215	0	lncRNA	41139-1_{1..748}	n408883|NR_030684|lncRNA|Homosapiens||RefGeneNoncode|NR_030684||1.8632100|-0.1221228	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408883|NR_030684|lncRNA|Homosapiens||RefGeneNoncode|NR_030684||1.8632100|-0.1221228	chr17	  7833662	  7834409	-	NA	NA	NA	NA	KCNAB3	NA	chr17:7826027-7832753	inter
CUST_16270_PI429285431	3.7041974	P	4.5472765	P	0.557452544550183	0	lncRNA	17975-1_{1..2273}	lnc-TCF12-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF12-1:10	chr15	 57599740	 57602012	+	lnc-TCF12-1	lnc-TCF12-1:10	XLOC_011264	linc-CGNL1-2	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20"	NA	inter
CUST_6038_PI429285431	0.91196585	A	1.0830544	A	0.888172279768793	0	lncRNA	5964-1_{1..674}	"transcript_id ""ENST00000578835.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578835.1"" | genecode_v17"	chr18	  1269568	  1270241	-	ENSG00000132204.9	ENST00000578835.1	LINC00470	LINC00470-010	NA	NA	NA	inter
CUST_48044_PI429285431	3.307069	A	3.398089	P	0.938858731879577	0	lncRNA	51924-1_{1..2311}	"gi|410170369|ref|XR_110765.3| PREDICTED: Homo sapiens uncharacterized LOC100510007 (LOC100510007), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410170369|ref|XR_110765.3| PREDICTED: Homo sapiens uncharacterized LOC100510007 (LOC100510007), misc_RNA"	NA	NA	NA	NA	NA	XR_110765.3	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00"	NA	Unknown
CUST_27501_PI429285431	4.11822	P	4.8162537	P	0.616411763764366	0	lncRNA	29074-1_{1..3000}	n324681|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000075332|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000075332|2.7187300|-0.1573271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324681|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000075332|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000075332|2.7187300|-0.1573271	chr22	 29695642	 29698641	+	NA	NA	NA	NA	GAS2L1	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-56.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-55.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr22:29702997-29708774"	NA	inner
CUST_39185_PI429285431	3.8161097	P	3.798053	P	1.01259460299971	0	lncRNA	40160-1_{1..1397}	n385929|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vow.2||1.5032200|-0.1163238	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385929|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vow.2||1.5032200|-0.1163238	chr1	 16972068	 16973464	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24829_PI429285431	2.247335	A	2.3933122	A	0.903767009551268	0	lncRNA	26369-1_{1..576}	lnc-AGGF1-3:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGGF1-3:11	chr5	 76414145	 76414720	+	lnc-AGGF1-3	lnc-AGGF1-3:11	ENSG00000250802.2	CTC-564N23.3	NA	NA	NA	inter
CUST_22707_PI429285431	0.90217406	A	1.0399501	A	0.908919203608122	0	lncRNA	24291-1_{1..434}	lnc-LETM2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LETM2-2:1	chr8	 38194841	 38195274	+	lnc-LETM2-2	lnc-LETM2-2:1	ENSG00000254898.1	RP11-513D5.2	WHSC1L1	"hg19_refFlat_WHSC1L1:range=chr8:38175474-382056895'pad=0,hg19_refFlat_WHSC1L1:range=chr8:38175474-382056895'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_WHSC1L1:range=chr8:38133159-382056895'pad=0,hg19_refFlat_WHSC1L1:range=chr8:38133159-382056895'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60chr8:38184841-38205069"	NA	inner
CUST_13122_PI429285431	5.4551425	P	5.308735	P	1.10680993568548	0	lncRNA	14747-1_{1..1284}	lnc-IRG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRG1-1:1	chr13	 77264934	 77266217	+	lnc-IRG1-1	lnc-IRG1-1:1	XLOC_010436	linc-CLN5-1	NA	NA	NA	inter
CUST_22677_PI429285431	9.926303	P	10.011456	P	0.942684557487994	0	lncRNA	24260-1_{1..319}	lnc-TMCO3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMCO3-1:2	chr13	114130175	114130493	+	lnc-TMCO3-1	lnc-TMCO3-1:2	ENSG00000233613.1	DCUN1D2-AS2	DCUN1D2	NA	chr13:114120175-114140450	inner
CUST_4767_PI429285431	0.8923118	A	0.88858956	A	1.00258339138089	0	lncRNA	4713-1_{1..601}	"transcript_id ""ENST00000553046.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553046.1"" | genecode_v17"	chr14	 36343063	 36343663	+	ENSG00000257272.1	ENST00000553046.1	RP11-317N8.3	RP11-317N8.3-001	BRMS1L	NA	chr14:36333063-36341169	inter
CUST_6270_PI429285431	2.2776468	A	2.9276695	A	0.637270286489022	0	lncRNA	6194-1_{1..560}	"transcript_id ""ENST00000584843.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584843.1"" | genecode_v17"	chr18	 74892062	 74892621	+	ENSG00000265844.1	ENST00000584843.1	RP11-751H17.1	RP11-751H17.1-001	NA	NA	NA	inter
LNCA_21_P0008415	1.2244965	A	0.89957476	A	1.25259648880986	0	lncRNA	TCONS_00022696	NA	NA	NA	NA	XLOC_010985	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010985), lincRNA [TCONS_00022696]"	chr14:29530602-29530543	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022696	TCONS_00022696	chr14	 29530543	 29530602	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26701_PI429285431	0.890288	A	0.88837487	A	1.00132696029929	0	lncRNA	28203-6_{15001..18000}	n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	chr13	 70696309	 70699308	+	NA	NA	NA	NA	KLHL1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0,hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0 3'pad=0 strand=- repeatMasking=none,-105.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr13:70671309-70682625"	NA	inner
CUST_8924_PI429285431	0.9260153	A	0.9314692	A	0.996226781139722	0	lncRNA	10459-1_{1..2226}	lnc-GRSF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GRSF1-1:1	chr4	 71657657	 71659882	-	lnc-GRSF1-1	lnc-GRSF1-1:1	ENSG00000250265	ENST00000514658	RUFY3	NA	chr4:71647657-71669273	inner
CUST_4080_PI429285431	1.4761872	A	1.0494386	A	1.34420073708444	0	lncRNA	4041-1_{1..330}	"transcript_id ""ENST00000545593.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000545593.1"" | genecode_v17"	chr11	115204296	115204625	+	ENSG00000256972.1	ENST00000545593.1	AP000462.3	AP000462.3-001	CADM1	NA	chr11:115194296-115220981	inner
CUST_47017_PI429285431	7.939678	P	8.076338	P	0.909622597337494	0	lncRNA	51111-2_{3001..3352}	"gi|256017225|ref|NR_028339.1| Homo sapiens PARD6G antisense RNA 1 (PARD6G-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|256017225|ref|NR_028339.1| Homo sapiens PARD6G antisense RNA 1 (PARD6G-AS1), transcript variant 1, non-coding RNA"	Chr18	 77908807	 77909158	+	100130522	NR_028339.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003316	0.91018146	A	1.8591751	A	0.517993665306573	0	lncRNA	AK056081	NA	AK056081	NA	Hs.586152	XLOC_003433	NA	NA	THC2630739	NA	"BROAD Institute lincRNA (XLOC_003433), lincRNA [TCONS_00007381]"	chr4:4788961-4789020	hs|4p16.2	Agilent_HUMAN_G3V2	AK056081	AK056081	chr4	  4788961	  4789020	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28878_PI429285431	0.89637536	A	0.89602506	A	1.00024283893795	0	lncRNA	30593-1_{1..733}	n326300|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086293|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086293|-1.0869900|-0.5564703	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326300|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086293|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086293|-1.0869900|-0.5564703	chr1	186941376	186942108	-	NA	NA	NA	NA	PLA2G4A	NA	chr1:186931376-186956634	inner
CUST_35024_PI429285431	0.90972966	A	0.9139087	A	0.997107501564435	0	lncRNA	36437-1_{1..1422}	n341963|BC017982|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4444|NULL|-1.0992100|-0.2526899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341963|BC017982|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4444|NULL|-1.0992100|-0.2526899	chr12	 70053813	 70055234	-	NA	NA	NA	NA	BEST3	NA	chr12:70047389-70065209	inner
CUST_32243_PI429285431	0.9144478	A	1.1662506	A	0.839846282531482	0	lncRNA	33935-1_{1..953}	n338818|BC024972|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1241|NULL|-1.0823200|-0.2830057	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n338818|BC024972|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1241|NULL|-1.0823200|-0.2830057	chr13	 96131697	 96132649	-	NA	NA	NA	NA	CLDN10	NA	chr13:96121697-96196165	inner
CUST_46499_PI429285431	7.4707623	P	7.0189886	P	1.36772074748356	0	lncRNA	50693-1_{1..2828}	"gi|358248285|ref|NR_045566.1| Homo sapiens Bardet-Biedl syndrome 4 (BBS4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|358248285|ref|NR_045566.1| Homo sapiens Bardet-Biedl syndrome 4 (BBS4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_045566.1	NA	NA	NA	NA	NA	Unknown
CUST_23948_PI429285431	1.7114036	A	1.1314366	A	1.49481505605811	0	lncRNA	25504-2_{3001..3879}	lnc-RHOBTB2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RHOBTB2-2:2	chr8	 22748189	 22749067	+	lnc-RHOBTB2-2	lnc-RHOBTB2-2:2	ENSG00000248738.2	RP11-87E22.2	PEBP4	NA	chr8:22735189-22755535	inner
CUST_24941_PI429285431	0.8979955	A	0.9307107	A	0.977578729535671	0	lncRNA	26481-1_{1..780}	lnc-PPP4R1-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP4R1-8:1	chr18	  8636187	  8636966	-	lnc-PPP4R1-8	lnc-PPP4R1-8:1	ENSG00000266708.1	RP11-661O13.1	RAB12	"hg19_refFlat_RAB12:range=chr18:8609726-86382605'pad=0,hg19_refFlat_RAB12:range=chr18:8609726-86382605'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90chr18:8626187-8639380"	NA	inner
CUST_29380_PI429285431	6.642653	P	8.027533	P	0.382921348451374	0	lncRNA	31132-1_{1..412}	n332650|AB038674|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059241|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059241|0.6488070|-0.2363509	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332650|AB038674|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059241|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059241|0.6488070|-0.2363509	chr11	 27679971	 27680382	-	NA	NA	NA	NA	BDNF	NA	chr11:27676440-27731180	inter
CUST_38661_PI429285431	0.918859	A	1.030577	A	0.925485312663648	0	lncRNA	39662-1_{1..1874}	n383934|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xwp.1||-1.1193100|-0.2315705	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383934|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xwp.1||-1.1193100|-0.2315705	chr20	 52015466	 52017339	-	NA	NA	NA	NA	TSHZ2	NA	chr20:52005466-52111869	inner
CUST_39504_PI429285431	2.979813	A	2.7118788	A	1.20408246288027	0	lncRNA	40450-1_{1..317}	n387241|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011aix.1||1.7484500|-0.1262601	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387241|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011aix.1||1.7484500|-0.1262601	chr22	 23261706	 23262022	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41427_PI429285431	0.89909744	A	0.90330434	A	0.997088246527173	0	lncRNA	42586-1_{1..86}	ENST00000585257 ncrna:miRNA chromosome:GRCh37:1:178646884:178646969:1 gene:ENSG00000266417 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585257 ncrna:miRNA chromosome:GRCh37:1:178646884:178646969:1 gene:ENSG00000266417 gene_biotype:miRNA transcript_biotype:miRNA	chr1	178646884	178646969	+	ENSG00000266417	ENST00000585257	NA	NA	NA	NA	NA	inter
CUST_2507_PI429285431	0.9133633	A	1.1190441	A	0.867129396908377	0	lncRNA	2499-1_{1..381}	"transcript_id ""ENST00000448198.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448198.1"" | genecode_v17"	chr6	 32685782	 32686162	+	ENSG00000232080.3	ENST00000448198.1	XXbac-BPG254F23.7	XXbac-BPG254F23.7-001	NA	NA	NA	inter
CUST_38538_PI429285431	8.646221	P	7.8171997	P	1.77647981950133	0	lncRNA	39548-1_{1..1964}	n383233|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jsc.1||-0.0389972|-0.3001250	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383233|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jsc.1||-0.0389972|-0.3001250	chr17	 74553856	 74555819	+	NA	NA	NA	NA	ST6GALNAC2	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90chr17:74561461-74571361"	NA	inter
CUST_22383_PI429285431	1.3729513	A	0.910163	A	1.37820290166555	0	lncRNA	23973-1_{1..762}	lnc-NCAM2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-NCAM2-6:1	chr21	 24503345	 24504106	+	lnc-NCAM2-6	lnc-NCAM2-6:1	ENSG00000230972.1	AP001255.2	NA	NA	NA	inter
CUST_4160_PI429285431	0.89739954	A	0.89809966	A	0.999514831528251	0	lncRNA	4118-1_{1..560}	"transcript_id ""ENST00000541404.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000541404.1"" | genecode_v17"	chr12	  9856673	  9857232	+	ENSG00000256582.1	ENST00000541404.1	RP11-75L1.1	RP11-75L1.1-001	CLEC2D	NA	chr12:9846673-9852151	inter
LNCA_33_P3224426	4.191659	P	4.037161	P	1.1130342595674	0	lncRNA	XR_132809	XR_132809	XR_132809	   729305	Hs.148365	LOC729305	uncharacterized LOC729305	ENST00000513405	THC2678881	NA	"PREDICTED: Homo sapiens hypothetical LOC729305 (LOC729305), miscRNA [XR_132809]"	chr11:134605634-134605693	hs|11q25	Agilent_HUMAN_G3V2	XR_132809	XR_132809	chr11	134605634	134605693	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006295	0.91498816	A	0.9042035	A	1.00750336690297	0	lncRNA	TCONS_00016406	NA	NA	NA	NA	XLOC_007777	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007777), lincRNA [TCONS_00016406]"	chr9:94246628-94246569	hs|9q22.31	Agilent_HUMAN_G3V2	TCONS_00016406	TCONS_00016406	chr9	 94246569	 94246628	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001101	3.0310607	P	3.1463835	P	0.923175728979324	0	lncRNA	ENST00000449215	NA	NA	NA	NA	XLOC_000708	NA	ENST00000449215	NA	NA	"BROAD Institute lincRNA (XLOC_000708), lincRNA [TCONS_00000471]"	chr1:14548448-14548389	hs|1p36.21	Agilent_HUMAN_G3V2	ENST00000449215	ENST00000449215	chr1	 14548389	 14548448	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45975_PI429285431	0.89484465	A	1.1114476	A	0.860589444361813	0	lncRNA	50266-2_{3001..3789}	"gi|374532815|ref|NR_046256.1| Homo sapiens alpha-2-macroglobulin-like 1 (A2ML1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374532815|ref|NR_046256.1| Homo sapiens alpha-2-macroglobulin-like 1 (A2ML1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_046256.1	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10"	NA	Unknown
CUST_31172_PI429285431	5.78421	P	5.568583	P	1.16120846974735	0	lncRNA	32967-1_{1..644}	n337595|U04678|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000398652|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000398652|3.6452400|-0.0898928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337595|U04678|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000398652|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000398652|3.6452400|-0.0898928	chr17	  2995445	  2996088	-	NA	NA	NA	NA	OR1D2	NA	chr17:2995352-2996290	inner
LNCA_21_P0011490	5.4427986	P	5.347068	P	1.06860642758611	0	lncRNA	TCONS_l2_00010287	NA	NA	NA	NA	XLOC_l2_005554	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005554), lincRNA [TCONS_l2_00010287]"	chr16:75743406-75743347	hs|16q23.1	Agilent_HUMAN_G3V2	TCONS_l2_00010287	TCONS_l2_00010287	chr16	 75743347	 75743406	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1322_PI429285431	0.90246725	A	0.9159018	A	0.99073110306749	0	lncRNA	1311-1_{1..454}	"transcript_id ""ENST00000435884.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435884.1"" | genecode_v17"	chr3	 26660821	 26661274	-	ENSG00000225386.1	ENST00000435884.1	AC099754.1	AC099754.1-001	LRRC3B	NA	chr3:26664300-26674181	inter
CUST_19497_PI429285431	1.5767958	A	1.3616457	A	1.16082468191674	0	lncRNA	21153-1_{1..462}	lnc-FMN1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FMN1-4:1	chr15	 33602779	 33603240	-	lnc-FMN1-4	lnc-FMN1-4:1	ENSG00000259446.1	RP11-489D6.2	RYR3	NA	chr15:33603177-33612860	inter
CUST_37904_PI429285431	1.7699804	A	1.4992626	A	1.20640791585074	0	lncRNA	38993-1_{1..2577}	n346443|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1993|NULL|-1.3035300|-0.2285650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346443|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1993|NULL|-1.3035300|-0.2285650	chr22	 51022805	 51025381	+	NA	NA	NA	NA	CHKB	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70chr22:51017387-51021428"	NA	inter
LNCA_21_P0008681	0.91078824	A	0.9232212	A	0.991419156239578	0	lncRNA	TCONS_00023528	NA	NA	NA	NA	XLOC_011366	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011366), lincRNA [TCONS_00023528]"	chr15:95613699-95613758	hs|15q26.2	Agilent_HUMAN_G3V2	TCONS_00023528	TCONS_00023528	chr15	 95613699	 95613758	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001327	0.91162074	A	0.92365545	A	0.991692871175001	0	lncRNA	TCONS_00001004	NA	NA	NA	NA	XLOC_000268	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000268), lincRNA [TCONS_00001004]"	chr1:81112772-81112831	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_00001004	TCONS_00001004	chr1	 81112772	 81112831	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008150	2.1735096	A	0.9248714	A	2.37617023787124	0	lncRNA	THC2651391	NA	NA	NA	NA	XLOC_010585	NA	NA	THC2651391	NA	"BROAD Institute lincRNA (XLOC_010585), lincRNA [TCONS_00021984]"	chr13:044678111-044678052	hs|13q14.11	Agilent_HUMAN_G3V2	THC2651391	THC2651391	chr13	 44678052	 44678111	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37818_PI429285431	0.996872	A	5.4476748	P	0.0457272256113994	0	lncRNA	38909-1_{1..603}	n346335|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1885|NULL|-1.5907400|-0.2015663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346335|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1885|NULL|-1.5907400|-0.2015663	chr22	 46000325	 46000927	-	NA	NA	NA	NA	FBLN1	NA	chr22:45990325-45997014	inter
CUST_43266_PI429285431	3.6965432	P	3.4512382	P	1.18534333775923	0	lncRNA	48084-1_{1..335}	ENST00000602435 havana:sense_intronic chromosome:GRCh37:10:35499344:35499678:1 gene:ENSG00000269952 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602435 havana:sense_intronic chromosome:GRCh37:10:35499344:35499678:1 gene:ENSG00000269952 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr10	 35499344	 35499678	+	ENSG00000269952	ENST00000602435	NA	NA	CREM	NA	chr10:35489344-35501886	inter
CUST_19146_PI429285431	0.9403567	A	0.9002327	A	1.02820219709457	0	lncRNA	20820-1_{1..1472}	lnc-BORA-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-BORA-4:1	NA	NA	     1471	NA	NA	NA	NA	NA	NA	"hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0,hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0 3'pad=0 strand=- repeatMasking=none,-105.40"	NA	Unknown
CUST_35872_PI429285431	5.5979323	P	5.644124	P	0.968489491362111	0	lncRNA	37263-1_{1..2245}	n344536|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_84|NULL|-1.3000900|-0.2921798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344536|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_84|NULL|-1.3000900|-0.2921798	chr14	 88490902	 88493146	+	NA	NA	NA	NA	GPR65	NA	chr14:88480902-88481155	inter
CUST_8111_PI429285431	10.163729	P	10.002997	P	1.11785417523526	0	lncRNA	9714-1_{1..1322}	lnc-RALGAPB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RALGAPB-1:1	chr20	 37078905	 37080226	+	lnc-RALGAPB-1	lnc-RALGAPB-1:1	ENSG00000174365	SNHG11	NA	NA	NA	inter
CUST_19404_PI429285431	5.711344	P	4.8599186	P	1.80428269781127	0	lncRNA	21066-1_{1..479}	lnc-IL16-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL16-1:4	chr15	 81635074	 81635552	+	lnc-IL16-1	lnc-IL16-1:4	ENSG00000259343.1	RP11-761I4.3	TMC3	NA	chr15:81625074-81645491	inner
CUST_34775_PI429285431	1.7040652	A	1.9841039	A	0.823568924902953	0	lncRNA	36214-1_{1..3000}	n341684|AL832569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4155|NULL|1.3840500|-0.2047240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341684|AL832569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4155|NULL|1.3840500|-0.2047240	chr9	 35858734	 35861733	+	NA	NA	NA	NA	TMEM8B	"hg19_refFlat_OR1N2:range=chr9:125315449-1253164415'pad=0,hg19_refFlat_OR1N2:range=chr9:125315449-1253164415'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70chr9:35848734-35854844"	NA	inter
CUST_41513_PI429285431	4.2841606	P	5.0642514	P	0.582330141523837	0	lncRNA	42742-1_{1..148}	ENST00000583817 ncrna:miRNA chromosome:GRCh37:9:137741659:137741806:-1 gene:ENSG00000266060 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583817 ncrna:miRNA chromosome:GRCh37:9:137741659:137741806:-1 gene:ENSG00000266060 gene_biotype:miRNA transcript_biotype:miRNA	chr9	137741659	137741806	-	ENSG00000266060	ENST00000583817	NA	NA	COL5A1	NA	chr9:137731659-137736689	inter
CUST_33434_PI429285431	0.9077606	A	1.7352874	A	0.563494408555024	0	lncRNA	35012-1_{1..2501}	n340164|AK094649|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2625|NULL|0.2828700|-0.3302735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n340164|AK094649|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2625|NULL|0.2828700|-0.3302735	chr10	122521323	122523823	-	NA	NA	NA	NA	WDR11	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90chr10:122610687-122620691"	NA	inter
CUST_5632_PI429285431	0.89928544	A	0.90220296	A	0.997979772649615	0	lncRNA	5560-1_{1..366}	"transcript_id ""ENST00000562921.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562921.1"" | genecode_v17"	chr16	 79750622	 79750987	-	ENSG00000261390.1	ENST00000562921.1	RP11-345M22.2	RP11-345M22.2-002	NA	NA	NA	inter
CUST_48526_PI429285431	6.861647	P	5.4885883	P	2.59019138459717	0	lncRNA	52376-1_{1..477}	hg19_lincRNAsTranscripts_TCONS_l2_00014567 range=chr2:49141327-49171820 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014567 range=chr2:49141327-49171820 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 49141327	 49141803	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00316185	9.081663	P	8.87292	P	1.15568081659364	0	lncRNA	TCONS_00012257	NA	NA	NA	NA	XLOC_005810	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005810), lincRNA [TCONS_00012257]"	chr6:113944492-113944433	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00012257	TCONS_00012257	chr6	113944433	113944492	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28216_PI429285431	1.1025612	A	0.9117609	A	1.14139670235694	0	lncRNA	29846-1_{1..762}	n325500|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322385|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322385|-0.8982020|-0.2567402	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325500|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322385|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322385|-0.8982020|-0.2567402	chr2	   548203	   548964	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3516_PI429285431	6.1442604	P	5.846419	P	1.22930371860477	0	lncRNA	3487-1_{1..635}	"transcript_id ""ENST00000451108.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451108.1"" | genecode_v17"	chr9	113361755	113362389	+	ENSG00000232896.1	ENST00000451108.1	RP11-410K21.2	RP11-410K21.2-001	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90"	NA	inter
CUST_8162_PI429285431	0.90191054	A	0.8976611	A	1.0029498295651	0	lncRNA	9765-1_{1..1782}	lnc-C4orf36-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C4orf36-1:1	chr4	 87918346	 87920127	-	lnc-C4orf36-1	lnc-C4orf36-1:1	ENSG00000249366	ENST00000505169	AFF1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chr4:87908346-87928913"	NA	inner
LNCA_21_P0008723	2.406154	A	1.7022326	A	1.62892637758482	0	lncRNA	THC2699280	NA	NA	NA	NA	XLOC_011430	NA	NA	THC2699280	NA	"BROAD Institute lincRNA (XLOC_011430), lincRNA [TCONS_00023630]"	chr15:038361050-038360991	hs|15q14	Agilent_HUMAN_G3V2	THC2699280	THC2699280	chr15	 38360991	 38361050	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8363_PI429285431	0.9167493	A	0.9045624	A	1.00848309461851	0	lncRNA	9943-1_{1..908}	lnc-GSG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GSG1-1:1	chr12	 13350121	 13351028	-	lnc-GSG1-1	lnc-GSG1-1:1	ENSG00000223363	ENST00000411825	EMP1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70chr12:13349602-13360708"	NA	inner
CUST_4440_PI429285431	4.360217	P	4.4118342	P	0.964854161881127	0	lncRNA	4390-1_{1..1603}	"transcript_id ""ENST00000539299.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539299.1"" | genecode_v17"	chr12	122233183	122234785	-	ENSG00000212694.4	ENST00000539299.1	AC084018.1	AC084018.1-201	SETD1B	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00chr12:122242638-122244785"	NA	inter
CUST_22178_PI429285431	1.3151425	A	1.0597609	A	1.19365142800787	0	lncRNA	23780-1_{1..553}	lnc-FAM59A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM59A-2:1	chr18	 29703910	 29704462	-	lnc-FAM59A-2	lnc-FAM59A-2:1	ENSG00000263393.1	RP11-53I6.4	RNF138	NA	chr18:29693910-29711524	inner
CUST_38043_PI429285431	1.0422984	A	0.90108496	A	1.10283230989488	0	lncRNA	39123-2_{3001..5665}	n377616|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029999||3.1374600|-0.3379665	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377616|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029999||3.1374600|-0.3379665	chr6	  2373338	  2376002	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9286_PI429285431	0.89163226	A	0.8916671	A	0.99997585104382	0	lncRNA	10792-1_{1..367}	lnc-WDR11-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR11-3:1	chr10	122740464	122740830	+	lnc-WDR11-3	lnc-WDR11-3:1	XLOC_008646	linc-TACC2-4	NA	NA	NA	inter
CUST_29897_PI429285431	4.8746557	P	5.0523868	P	0.884092299263992	0	lncRNA	31660-1_{1..396}	n333972|M14261|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194316|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194316|1.8410800|-0.0282859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333972|M14261|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194316|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194316|1.8410800|-0.0282859	chr7	142148930	142149325	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6147_PI429285431	3.5628395	P	4.069399	P	0.703899077298355	0	lncRNA	6073-1_{1..364}	"transcript_id ""ENST00000593122.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593122.1"" | genecode_v17"	chr18	 33023833	 33024196	-	ENSG00000267583.1	ENST00000593122.1	RP11-322E11.5	RP11-322E11.5-003	INO80C	NA	chr18:33048291-33056716	inter
CUST_18775_PI429285431	9.4783325	P	9.531258	P	0.963979585845413	0	lncRNA	20471-1_{1..195}	lnc-FAM199X-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM199X-1:1	chrX	103357422	103357616	+	lnc-FAM199X-1	lnc-FAM199X-1:1	ENSG00000166707	LL0XNC01-46H11.1	MCART6	NA	chrX:103347422-103367563	inner
CUST_21346_PI429285431	0.90461963	A	0.9140606	A	0.993477383481301	0	lncRNA	22969-1_{1..442}	lnc-PLAU-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PLAU-1:1	chr10	 75787376	 75787817	+	lnc-PLAU-1	lnc-PLAU-1:1	ENSG00000225761.1	RP11-417O11.5	VCL	NA	chr10:75777376-75797673	inner
CUST_29841_PI429285431	9.713191	P	10.048161	P	0.792800622264361	0	lncRNA	31604-1_{1..290}	n333730|L05087|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191664|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191664|1.0482800|-0.1093045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333730|L05087|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191664|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191664|1.0482800|-0.1093045	chr16	 67472405	 67472694	-	NA	NA	NA	NA	ATP6V0D1	NA	chr16:67471917-67482900	inner
CUST_25880_PI429285431	1.3074859	A	0.9083913	A	1.31868007978278	0	lncRNA	27400-1_{1..543}	lnc-ERMP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ERMP1-1:1	chr9	  5720180	  5720722	-	lnc-ERMP1-1	lnc-ERMP1-1:1	ENSG00000225408.1	RP11-207C16.4	KIAA1432	"hg19_refFlat_KIAA1432:range=chr9:5629310-57742465'pad=0,hg19_refFlat_KIAA1432:range=chr9:5629310-57742465'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_KIAA1432:range=chr9:5629310-57693305'pad=0,hg19_refFlat_KIAA1432:range=chr9:5629310-57693305'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40chr9:5710180-5730244"	NA	inner
LNCA_21_P0014206	0.9022215	A	0.8980982	A	1.00286214189905	0	lncRNA	XR_108844	XR_108844	XR_108844	NA	NA	LOC100505951	uncharacterized LOC100505951	NA	THC2744658	NA	"PREDICTED: Homo sapiens hypothetical LOC100505951 (LOC100505951), miscRNA [XR_108844]"	chr7:86789513-86789572	hs|7q21.12	Agilent_HUMAN_G3V2	XR_108844	XR_108844	chr7	 86789513	 86789572	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23287_PI429285431	0.89924735	A	0.90760565	A	0.994223218064593	0	lncRNA	24858-1_{1..495}	lnc-GSX2-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GSX2-4:4	chr4	 54405260	 54405754	+	lnc-GSX2-4	lnc-GSX2-4:4	ENSG00000250930.1	LNX1-AS1	LNX1	NA	chr4:54395260-54415515	inner
CUST_24733_PI429285431	5.518726	P	5.8091764	P	0.817646754713713	0	lncRNA	26279-1_{1..1527}	lnc-CIAO1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CIAO1-1:1	chr2	 96907615	 96909141	+	lnc-CIAO1-1	lnc-CIAO1-1:1	ENSG00000204685.5	AC012307.3	TMEM127	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00chr2:96915946-96918332"	NA	inter
CUST_20967_PI429285431	0.88458467	A	0.88481706	A	0.999838932499473	0	lncRNA	22597-1_{1..1633}	lnc-KIAA0930-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-KIAA0930-3:1	chr22	 45398746	 45400378	-	lnc-KIAA0930-3	lnc-KIAA0930-3:1	ENSG00000230922.1	RP4-753M9.1	PHF21B	NA	chr22:45388746-45405809	inner
CUST_39246_PI429285431	7.2803593	P	6.613594	P	1.58750958218764	0	lncRNA	40217-1_{1..967}	n386103|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010azh.1||5.2321100|-0.3270771	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386103|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010azh.1||5.2321100|-0.3270771	chr15	 28986246	 28987212	+	NA	NA	NA	NA	LOC653720	NA	chr15:28976246-28983530	inter
CUST_45008_PI429285431	1.3382964	A	2.051306	A	0.61004619574532	0	lncRNA	49511-1_{1..1291}	"gi|223890253|ref|NR_026902.1| Homo sapiens uncharacterized protein MGC16142 (MGC16142), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223890253|ref|NR_026902.1| Homo sapiens uncharacterized protein MGC16142 (MGC16142), non-coding RNA"	Chr7	 92167789	 92169079	+	84849	NR_026902.1	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50"	NA	inter
CUST_838_PI429285431	3.2249417	A	3.5138128	P	0.818542312354912	0	lncRNA	832-1_{1..767}	"transcript_id ""ENST00000586952.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586952.1"" | genecode_v17"	chr2	 35387842	 35388608	+	ENSG00000226994.2	ENST00000586952.1	AC012593.1	AC012593.1-002	NA	NA	NA	inter
CUST_42786_PI429285431	0.8948847	A	0.89257336	A	1.00160338285024	0	lncRNA	45776-1_{1..85}	ENST00000515912 ncrna:snoRNA chromosome:GRCh37:2:159390712:159390796:1 gene:ENSG00000251721 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515912 ncrna:snoRNA chromosome:GRCh37:2:159390712:159390796:1 gene:ENSG00000251721 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	159390712	159390796	+	ENSG00000251721	ENST00000515912	NA	NA	PKP4	NA	chr2:159380712-159400796	inner
CUST_43485_PI429285431	0.9085709	A	1.4715307	A	0.676912001089175	0	lncRNA	48279-1_{1..1043}	"gi|224493655|ref|NR_027120.1| Homo sapiens uncharacterized LOC729467 (HSD52), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224493655|ref|NR_027120.1| Homo sapiens uncharacterized LOC729467 (HSD52), non-coding RNA"	Chr1	 59597608	 59598650	-	729467	NR_027120.1	NA	NA	NA	NA	NA	inter
CUST_13091_PI429285431	2.4697773	A	2.6925716	A	0.856904123770253	0	lncRNA	14715-1_{1..816}	lnc-COPZ2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COPZ2-1:4	chr17	 46124980	 46125795	-	lnc-COPZ2-1	lnc-COPZ2-1:4	XLOC_012503	linc-COPZ2	NFE2L1	NA	chr17:46125686-46135406	inter
CUST_51462_PI429285431	6.4287825	P	6.7666974	P	0.791183969239424	0	lncRNA	55039-1_{1..458}	hg19_lincRNAsTranscripts_TCONS_l2_00010123 range=chr16:33365340-33367585 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010123 range=chr16:33365340-33367585 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 33365340	 33365797	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14264_PI429285431	2.2879598	A	2.373192	A	0.942632808112317	0	lncRNA	15922-1_{1..515}	lnc-PMFBP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PMFBP1-3:1	chr16	 72341955	 72342469	-	lnc-PMFBP1-3	lnc-PMFBP1-3:1	XLOC_012003	linc-PMFBP1-2	NA	NA	NA	inter
LNCA_33_P3270926	1.533537	A	2.237517	A	0.613876352031795	0	lncRNA	XR_110088	XR_110088	XR_110088	   389607	Hs.679027	LOC389607	uncharacterized LOC389607	NA	THC2484974	NA	"PREDICTED: Homo sapiens hypothetical LOC389607 (LOC389607), miscRNA [XR_110088]"	chr8:607638-607579	hs|8p23.3	Agilent_HUMAN_G3V2	XR_110088	XR_110088	chr8	   607579	   607638	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8285_PI429285431	1.296259	A	1.5592849	A	0.833338246510077	0	lncRNA	9870-1_{1..1252}	lnc-LOXL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LOXL1-1:1	chr15	 74210691	 74211942	+	lnc-LOXL1-1	lnc-LOXL1-1:1	ENSG00000251277	XLOC_011306	LOXL1	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30chr15:74218789-74221722"	NA	inter
CUST_37013_PI429285431	1.0343993	A	0.88388795	A	1.10996281847603	0	lncRNA	38153-1_{1..553}	n345470|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1019|NULL|-1.2306600|-0.2965698	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345470|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1019|NULL|-1.2306600|-0.2965698	chr1	163286484	163287036	+	NA	NA	NA	NA	NUF2	NA	chr1:163291723-163297037	inner
CUST_40283_PI429285431	0.94881403	A	1.1113968	A	0.893424194878063	0	lncRNA	41090-1_{1..3000}	n408231|NR_028394|lncRNA|Homosapiens||RefGeneNoncode|NR_028394||9.3746800|-0.1508701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408231|NR_028394|lncRNA|Homosapiens||RefGeneNoncode|NR_028394||9.3746800|-0.1508701	chr1	231664398	231667397	+	NA	NA	NA	NA	DISC1	NA	chr1:231762561-231964990	inter
CUST_1230_PI429285431	0.90047246	A	0.903979	A	0.997572403076384	0	lncRNA	1222-1_{1..717}	"transcript_id ""ENST00000426870.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426870.1"" | genecode_v17"	chr2	214020530	214021246	-	ENSG00000236193.1	ENST00000426870.1	AC079610.1	AC079610.1-001	IKZF2	NA	chr2:214010530-214016333	inter
CUST_47407_PI429285431	5.2980304	P	5.8680034	P	0.67362939527141	0	lncRNA	51450-1_{1..2425}	"gi|334085233|ref|NR_038311.1| Homo sapiens ITGB2 antisense RNA 1 (ITGB2-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|334085233|ref|NR_038311.1| Homo sapiens ITGB2 antisense RNA 1 (ITGB2-AS1), transcript variant 1, non-coding RNA"	Chr21	 46340950	 46343374	+	100505746	NR_038311.1	NA	NA	NA	NA	NA	inter
CUST_14538_PI429285431	3.6041312	P	3.9041696	P	0.812230777042352	0	lncRNA	16206-1_{1..261}	lnc-VEGFC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VEGFC-1:1	chr4	177592697	177592957	-	lnc-VEGFC-1	lnc-VEGFC-1:1	XLOC_004180	linc-ASB5-1	NA	NA	NA	inter
CUST_27399_PI429285431	1.8705548	A	1.5122765	A	1.28189518155829	0	lncRNA	28962-1_{1..472}	n324563|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040032|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040032|-0.9814880|-0.3089897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324563|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040032|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040032|-0.9814880|-0.3089897	chr6	 25169831	 25170302	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11926_PI429285431	0.8902272	A	0.888587	A	1.00113754652135	0	lncRNA	13507-1_{1..1588}	lnc-CDKN1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDKN1B-1:1	chr12	 12852934	 12854521	+	lnc-CDKN1B-1	lnc-CDKN1B-1:1	XLOC_009668	linc-CDKN1B	GPR19	NA	chr12:12842934-12849121	inter
CUST_50544_PI429285431	1.215287	A	0.9292643	A	1.21927427852457	0	lncRNA	54236-1_{1..685}	hg19_lincRNAsTranscripts_TCONS_l2_00030641 range=chrX:154577661-154581838 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030641 range=chrX:154577661-154581838 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	154577661	154578345	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21426_PI429285431	4.061055	P	3.5040872	P	1.47117390985976	0	lncRNA	23045-2_{3001..3779}	lnc-TTLL11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TTLL11-1:1	chr9	124580953	124581731	-	lnc-TTLL11-1	lnc-TTLL11-1:1	ENSG00000261534.1	RP11-244O19.1	TTLL11	NA	chr9:124584204-124591731	inter
CUST_19770_PI429285431	1.2894782	A	1.7302005	A	0.736765647048582	0	lncRNA	21428-1_{1..437}	lnc-PNRC2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PNRC2-3:1	chr1	 24413240	 24413676	+	lnc-PNRC2-3	lnc-PNRC2-3:1	ENSG00000225315.1	RP11-293P20.2	MYOM3	"hg19_refFlat_MYOM3:range=chr1:24383854-244351265'pad=0,hg19_refFlat_MYOM3:range=chr1:24383854-244351265'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90chr1:24403240-24423289"	NA	inner
CUST_12690_PI429285431	0.89257514	A	1.2114685	A	0.801684585501481	0	lncRNA	14308-1_{1..359}	lnc-ZDHHC17-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZDHHC17-6:2	chr12	 76685898	 76686256	+	lnc-ZDHHC17-6	lnc-ZDHHC17-6:2	XLOC_009810	linc-ZDHHC17-1	NA	NA	NA	inter
CUST_26729_PI429285431	7.5348425	P	7.734007	P	0.871054866442193	0	lncRNA	28226-1_{1..3000}	n5181|U56440|His-1RNA|Homosapiens|His-1|NONCODEv2.0|n5181|NULL|-1.5906100|-0.3761680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n5181|U56440|His-1RNA|Homosapiens|His-1|NONCODEv2.0|n5181|NULL|-1.5906100|-0.3761680	chr2	145456943	145459942	+	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.60"	NA	inter
CUST_5288_PI429285431	0.9051157	A	0.939808	A	0.976239952385275	0	lncRNA	5228-1_{1..622}	"transcript_id ""ENST00000560368.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560368.1"" | genecode_v17"	chr15	 89130005	 89130626	-	ENSG00000249487.2	ENST00000560368.1	RP11-97O12.2	RP11-97O12.2-002	NA	NA	NA	inter
CUST_45708_PI429285431	6.126699	P	6.4353447	P	0.807399332939594	0	lncRNA	50077-1_{1..1024}	"gi|261490718|ref|NR_029409.1| Homo sapiens uncharacterized LOC255512 (LOC255512), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|261490718|ref|NR_029409.1| Homo sapiens uncharacterized LOC255512 (LOC255512), non-coding RNA"	Chr11	  1330938	  1331961	+	255512	NR_029409.1	NA	NA	NA	NA	NA	inter
CUST_3840_PI429285431	3.0059872	A	3.6390395	P	0.644810749484458	0	lncRNA	3807-1_{1..297}	"transcript_id ""ENST00000428814.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428814.1"" | genecode_v17"	chr10	134232587	134232883	+	ENSG00000231705.1	ENST00000428814.1	RP11-432J24.2	RP11-432J24.2-001	PWWP2B	NA	chr10:134222587-134231363	inter
CUST_40317_PI429285431	0.9173618	A	1.6294365	A	0.610441648010996	0	lncRNA	41120-1_{1..573}	n408356|NR_029449|lncRNA|Homosapiens||RefGeneNoncode|NR_029449||4.0157200|-0.1970030	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408356|NR_029449|lncRNA|Homosapiens||RefGeneNoncode|NR_029449||4.0157200|-0.1970030	chr12	 49121217	 49121789	+	NA	NA	NA	NA	ADCY6	NA	chr12:49159975-49169569	inter
CUST_1419_PI429285431	1.5277163	A	2.3006802	A	0.585213964136761	0	lncRNA	1408-1_{1..303}	"transcript_id ""ENST00000595232.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595232.1"" | genecode_v17"	chr3	107099491	107099793	-	ENSG00000239828.2	ENST00000595232.1	RP11-446H18.5	RP11-446H18.5-010	CCDC54	NA	chr3:107089491-107097481	inter
CUST_30883_PI429285431	0.8967695	A	0.8943936	A	1.00164820518581	0	lncRNA	32671-1_{1..230}	n336892|AY829436|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332401|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332401|-1.4198600|-0.4788301	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336892|AY829436|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332401|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332401|-1.4198600|-0.4788301	chr12	 14993220	 14993449	-	NA	NA	NA	NA	ART4	NA	chr12:14983220-14996413	inner
CUST_4707_PI429285431	3.9670358	P	4.03731	P	0.952456955959502	0	lncRNA	4654-1_{1..573}	"transcript_id ""ENST00000551565.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551565.1"" | genecode_v17"	chr14	 19505871	 19506443	+	ENSG00000257891.1	ENST00000551565.1	CTD-2311B13.1	CTD-2311B13.1-001	POTEG	NA	chr14:19495871-19525575	inter
CUST_2986_PI429285431	1.8002504	A	2.752453	A	0.516842781958879	0	lncRNA	2965-1_{1..510}	"transcript_id ""ENST00000521218.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521218.1"" | genecode_v17"	chr8	  8314419	  8314928	-	ENSG00000254153.1	ENST00000521218.1	CTA-398F10.2	CTA-398F10.2-001	NA	NA	NA	inter
CUST_25749_PI429285431	1.8571305	A	2.000273	A	0.905544534821472	0	lncRNA	27275-1_{1..481}	lnc-METTL22-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-METTL22-2:3	chr16	  8407745	  8408225	+	lnc-METTL22-2	lnc-METTL22-2:3	ENSG00000260058.1	RP11-279O17.3	NA	NA	NA	inter
CUST_8480_PI429285431	5.0262213	P	5.43412	P	0.753720376007471	0	lncRNA	10044-1_{1..1830}	lnc-ARHGAP17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARHGAP17-1:1	chr16	 25051527	 25053356	-	lnc-ARHGAP17-1	lnc-ARHGAP17-1:1	ENSG00000248022	ENST00000500975	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LCMT1:range=chr16:25123205-251893445'pad=0,hg19_refFlat_LCMT1:range=chr16:25123205-251893445'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90"	NA	inter
CUST_44815_PI429285431	1.1112931	A	0.90204257	A	1.15608744852285	0	lncRNA	49349-1_{1..1666}	"gi|223468702|ref|NR_026805.1| Homo sapiens long intergenic non-protein coding RNA 271 (LINC00271), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223468702|ref|NR_026805.1| Homo sapiens long intergenic non-protein coding RNA 271 (LINC00271), non-coding RNA"	Chr6	135818939	135820604	+	100131814	NR_026805.1	NA	NA	NA	NA	NA	inter
CUST_38366_PI429285431	0.90528816	A	1.3694048	A	0.724914805659829	0	lncRNA	39408-1_{1..2171}	n382166|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001xeo.2||-0.2600670|-0.3609124	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382166|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001xeo.2||-0.2600670|-0.3609124	chr14	 60180372	 60182542	+	NA	NA	NA	NA	RTN1	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00chr14:60170372-60192543"	NA	inner
CUST_7123_PI429285431	1.0804901	A	0.9030859	A	1.13084735235056	0	lncRNA	7060-1_{1..470}	"transcript_id ""ENST00000602313.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602313.1"" | genecode_v17"	chrX	150350858	150351327	+	ENSG00000269993.1	ENST00000602313.1	AF003625.3	AF003625.3-001	GPR50	NA	chrX:150345056-150349937	inter
CUST_43807_PI429285431	9.123555	P	7.5169864	P	3.04526673633865	0	lncRNA	48532-3_{6001..7104}	"gi|392871560|ref|NR_052013.2| Homo sapiens neuroblastoma amplified sequence (NBAS), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392871560|ref|NR_052013.2| Homo sapiens neuroblastoma amplified sequence (NBAS), transcript variant 2, non-coding RNA"	Chr2	 15313032	 15314135	-	51594	NR_052013.2	NA	NA	NA	NA	NA	inter
CUST_7373_PI429285431	4.086015	P	4.3737855	P	0.819166998351904	0	lncRNA	9019-1_{1..1796}	lnc-ZBTB17-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZBTB17-1:2	chr1	 16160560	 16162355	-	lnc-ZBTB17-1	lnc-ZBTB17-1:2	ENSG00000179743	RP11-169K16.9	NA	NA	NA	inter
CUST_5564_PI429285431	0.9160481	A	0.91873574	A	0.998138804088846	0	lncRNA	5493-1_{1..535}	"transcript_id ""ENST00000564102.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564102.1"" | genecode_v17"	chr16	 56155827	 56156361	+	ENSG00000260041.1	ENST00000564102.1	RP11-355E10.1	RP11-355E10.1-002	NA	NA	NA	inter
LNCA_21_P0010938	1.6611044	A	2.7658794	A	0.464974982274146	0	lncRNA	ENST00000457848	NA	NA	NA	NA	XLOC_l2_001911	NA	ENST00000457848	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001911), lincRNA [TCONS_l2_00004133]"	chr10:33867918-33867859	hs|10p11.22	Agilent_HUMAN_G3V2	ENST00000457848	ENST00000457848	chr10	 33867859	 33867918	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19389_PI429285431	0.89548695	A	0.89053637	A	1.00343737483868	0	lncRNA	21051-1_{1..779}	lnc-HIATL1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-HIATL1-6:1	chr9	 97666373	 97667151	+	lnc-HIATL1-6	lnc-HIATL1-6:1	ENSG00000236095.1	RP11-49O14.2	C9orf3	NA	chr9:97656373-97677036	inner
CUST_26390_PI429285431	3.8035452	P	3.7436633	P	1.04238042737573	0	lncRNA	27896-1_{1..1932}	lnc-SGSM3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SGSM3-2:1	chr22	 40922223	 40924154	+	lnc-SGSM3-2	lnc-SGSM3-2:1	ENSG00000232564.1	RP4-591N18.2	MKL1	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10chr22:40912223-40932711"	NA	inner
CUST_11800_PI429285431	1.0610318	A	0.93675315	A	1.08996261321636	0	lncRNA	13381-1_{1..1512}	lnc-IRX1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRX1-4:1	chr5	  3344168	  3345679	+	lnc-IRX1-4	lnc-IRX1-4:1	XLOC_004260	linc-IRX1-4	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-29.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80"	NA	inter
LNCA_21_P0010274	0.9160238	A	0.9064764	A	1.00663969910539	0	lncRNA	TCONS_00029108	NA	NA	NA	NA	XLOC_014046	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014046), lincRNA [TCONS_00029108]"	chr21:30294217-30294158	hs|21q21.3	Agilent_HUMAN_G3V2	TCONS_00029108	TCONS_00029108	chr21	 30294158	 30294217	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27721_PI429285431	10.757607	P	10.239546	P	1.43202928895201	0	lncRNA	29301-1_{1..483}	n324934|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079825|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079825|-1.2097000|-0.4200306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324934|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079825|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079825|-1.2097000|-0.4200306	chr20	 54738859	 54739341	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9923_PI429285431	2.9990423	P	3.6651173	P	0.630218932354172	0	lncRNA	11448-1_{1..386}	lnc-CCDC82-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC82-1:1	chr11	 96239893	 96240278	-	lnc-CCDC82-1	lnc-CCDC82-1:1	XLOC_009529	linc-CCDC82-1	NA	NA	NA	inter
LNCA_33_P3220753	1.2295543	A	1.7831427	A	0.681323370729393	0	lncRNA	XR_108644	XR_108644	XR_108644	100505635	Hs.668513	LOC100505635	uncharacterized LOC100505635	NA	THC2484651	NA	"PREDICTED: Homo sapiens hypothetical LOC100505635 (LOC100505635), miscRNA [XR_108644]"	chr6:39856237-39856178	hs|6p21.2	Agilent_HUMAN_G3V2	XR_108644	XR_108644	chr6	 39856178	 39856237	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1608_PI429285431	1.1935179	A	0.89877117	A	1.22666961234587	0	lncRNA	1594-1_{1..526}	"transcript_id ""ENST00000438156.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438156.1"" | genecode_v17"	chr3	190415712	190416237	-	ENSG00000228730.1	ENST00000438156.1	RP11-95L3.2	RP11-95L3.2-001	NA	NA	NA	inter
CUST_29354_PI429285431	9.291882	P	10.965038	P	0.313566643034836	0	lncRNA	31106-1_{1..537}	n332611|AL049995|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000023897|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000023897|-1.0731000|-0.2786829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332611|AL049995|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000023897|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000023897|-1.0731000|-0.2786829	chr8	 41119467	 41120003	-	NA	NA	NA	NA	SFRP1	NA	chr8:41119476-41130004	inner
LNCA_19_P00803507	4.0768676	P	3.584366	P	1.40688226340824	0	lncRNA	TCONS_00001278	NA	NA	NA	NA	XLOC_000566	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000566), lincRNA [TCONS_00001278]"	chr1:219391967-219392026	hs|1q41	Agilent_HUMAN_G3V2	TCONS_00001278	TCONS_00001278	chr1	219391967	219392026	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41094_PI429285431	8.545458	P	8.486088	P	1.04201063343363	0	lncRNA	41796-1_{1..83}	ENST00000579353 ncrna:miRNA chromosome:GRCh37:HSCHR15_1_CTG4:28779951:28780033:-1 gene:ENSG00000266882 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579353 ncrna:miRNA chromosome:GRCh37:HSCHR15_1_CTG4:28779951:28780033:-1 gene:ENSG00000266882 gene_biotype:miRNA transcript_biotype:miRNA	chrHSCHR15_1_CTG4	 28779951	 28780033	-	ENSG00000266882	ENST00000579353	NA	NA	NA	NA	NA	Unknown
CUST_39069_PI429285431	4.8845334	P	4.4581504	P	1.34386014013789	0	lncRNA	40044-1_{1..1400}	n385545|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004adi.3||1.0061100|-0.1870109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385545|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004adi.3||1.0061100|-0.1870109	chr9	 44997776	 44999175	+	NA	NA	NA	NA	LOC100505781	NA	chr9:44987776-44991061	inter
CUST_4931_PI429285431	0.8884455	A	0.89983714	A	0.992135009027299	0	lncRNA	4874-1_{1..332}	"transcript_id ""ENST00000555490.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555490.1"" | genecode_v17"	chr14	 87717447	 87717778	+	ENSG00000258496.1	ENST00000555490.1	RP11-1141N12.1	RP11-1141N12.1-001	NA	NA	NA	inter
LNCA_21_P0006050	3.730023	P	4.497918	P	0.587273726099855	0	lncRNA	ENST00000433572	NA	NA	NA	NA	XLOC_007554	NA	ENST00000433572	NA	NA	"BROAD Institute lincRNA (XLOC_007554), lincRNA [TCONS_00015746]"	chr9:125209765-125209824	hs|9q33.2	Agilent_HUMAN_G3V2	ENST00000433572	ENST00000433572	chr9	125209765	125209824	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40929_PI429285431	2.1936789	A	2.7009072	A	0.703572841615888	0	lncRNA	41613-1_{1..753}	n410840|NR_038294|lncRNA|Homosapiens||RefGeneNoncode|NR_038294||-0.9828000|-0.1885544	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410840|NR_038294|lncRNA|Homosapiens||RefGeneNoncode|NR_038294||-0.9828000|-0.1885544	chr6	 27661813	 27662565	+	NA	NA	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30"	NA	inter
LNCA_21_P0005692	2.2111404	A	2.6699524	A	0.727585148475763	0	lncRNA	TCONS_00014684	NA	NA	NA	NA	XLOC_006781	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006781), lincRNA [TCONS_00014684]"	chr8:40030475-40030534	hs|8p11.21	Agilent_HUMAN_G3V2	TCONS_00014684	TCONS_00014684	chr8	 40030475	 40030534	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11592_PI429285431	5.2159243	P	5.701928	P	0.714000158683556	0	lncRNA	13173-1_{1..363}	lnc-ZNF792-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF792-1:2	chr19	 35395865	 35396227	-	lnc-ZNF792-1	lnc-ZNF792-1:2	XLOC_013310	linc-ZNF599-1	NA	NA	NA	inter
CUST_38568_PI429285431	7.6243896	P	7.687102	P	0.957462308449112	0	lncRNA	39580-1_{1..419}	n383528|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002pnr.1||-0.8996150|-0.1800468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383528|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002pnr.1||-0.8996150|-0.1800468	chr19	 49946967	 49947385	-	NA	NA	NA	NA	SLC17A7	NA	chr19:49936967-49944808	inter
CUST_8311_PI429285431	4.655205	P	3.7948227	P	1.81551934167103	0	lncRNA	9895-1_{1..2921}	lnc-SLC25A2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A2-3:1	chr5	140595338	140598258	-	lnc-SLC25A2-3	lnc-SLC25A2-3:1	ENSG00000250800	ENST00000507840	PCDHB1	"hg19_refFlat_PCDHB5:range=chr5:140515017-1405174045'pad=0,hg19_refFlat_PCDHB5:range=chr5:140515017-1405174045'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.80;hg19_refFlat_PCDHB2:range=chr5:140474375-1404767715'pad=0,hg19_refFlat_PCDHB2:range=chr5:140474375-1404767715'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.50;hg19_refFlat_PCDHB4:range=chr5:140501581-1405039685'pad=0,hg19_refFlat_PCDHB4:range=chr5:140501581-1405039685'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.50;hg19_refFlat_PCDHB16:range=chr5:140562135-1405644655'pad=0,hg19_refFlat_PCDHB16:range=chr5:140562135-1405644655'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.30;hg19_refFlat_PCDHB6:range=chr5:140529839-1405322235'pad=0,hg19_refFlat_PCDHB6:range=chr5:140529839-1405322235'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.50;hg19_refFlat_PCDHB7:range=chr5:140552417-1405547985'pad=0,hg19_refFlat_PCDHB7:range=chr5:140552417-1405547985'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_PCDHB11:range=chr5:140579348-1405817415'pad=0,hg19_refFlat_PCDHB11:range=chr5:140579348-1405817415'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.50;hg19_refFlat_PCDHB12:range=chr5:140588480-1405908675'pad=0,hg19_refFlat_PCDHB12:range=chr5:140588480-1405908675'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.60;hg19_refFlat_PCDHB8:range=chr5:140557616-1405600215'pad=0,hg19_refFlat_PCDHB8:range=chr5:140557616-1405600215'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.50;hg19_refFlat_PCDHB9:range=chr5:140566893-1405692855'pad=0,hg19_refFlat_PCDHB9:range=chr5:140566893-1405692855'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.50;hg19_refFlat_PCDHB15:range=chr5:140625147-1406275105'pad=0,hg19_refFlat_PCDHB15:range=chr5:140625147-1406275105'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.50;hg19_refFlat_PCDHB3:range=chr5:140480234-1404826245'pad=0,hg19_refFlat_PCDHB3:range=chr5:140480234-1404826245'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.30;hg19_refFlat_PCDHB13:range=chr5:140593696-1405960925'pad=0,hg19_refFlat_PCDHB13:range=chr5:140593696-1405960925'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.50;hg19_refFlat_PCDHB14:range=chr5:140603078-1406054745'pad=0,hg19_refFlat_PCDHB14:range=chr5:140603078-1406054745'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.50;hg19_refFlat_PCDHB10:range=chr5:140572126-1405745285'pad=0,hg19_refFlat_PCDHB10:range=chr5:140572126-1405745285'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.50chr5:140585338-140606591"	NA	inner
CUST_7050_PI429285431	0.8974412	A	0.90575004	A	0.99425730366266	0	lncRNA	6995-1_{1..1379}	"transcript_id ""ENST00000602461.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602461.1"" | genecode_v17"	chrX	 45604639	 45606017	-	ENSG00000270069.1	ENST00000602461.1	RP6-99M1.2	RP6-99M1.2-002	NA	NA	NA	inter
LNCA_21_P0004331	5.4129314	P	5.295073	P	1.08512286223583	0	lncRNA	TCONS_00010167	NA	NA	NA	NA	XLOC_004631	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004631), lincRNA [TCONS_00010167]"	chr5:171906593-171934559	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00010167	TCONS_00010167	chr5	171906593	171934559	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1139_PI429285431	5.0605774	P	4.473674	P	1.50201935133557	0	lncRNA	1128-1_{1..418}	"transcript_id ""ENST00000443811.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443811.1"" | genecode_v17"	chr2	151485581	151485998	+	ENSG00000224048.1	ENST00000443811.1	AC104777.4	AC104777.4-004	NA	NA	NA	inter
CUST_46318_PI429285431	8.878944	P	8.857767	P	1.01478704017316	0	lncRNA	50547-1_{1..1488}	"gi|164259357|ref|NR_004844.1| Homo sapiens ribosomal protein L13a pseudogene 3 (RPL13AP3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|164259357|ref|NR_004844.1| Homo sapiens ribosomal protein L13a pseudogene 3 (RPL13AP3), non-coding RNA"	NA	NA	NA	NA	NA	NR_004844.1	NA	NA	NA	NA	NA	Unknown
CUST_37993_PI429285431	5.1746516	P	5.443713	P	0.829859266661302	0	lncRNA	39080-1_{1..269}	n346548|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2098|NULL|-1.2933700|-0.1876418	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346548|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2098|NULL|-1.2933700|-0.1876418	chr15	 20651210	 20651478	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3749_PI429285431	4.3406806	P	4.5081716	P	0.890389817979515	0	lncRNA	3718-1_{1..428}	"transcript_id ""ENST00000488805.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000488805.1"" | genecode_v17"	chr10	 81564241	 81564668	-	ENSG00000225484.2	ENST00000488805.1	RP11-773D16.1	RP11-773D16.1-002	NA	NA	NA	inter
CUST_5874_PI429285431	4.379558	P	4.1587734	P	1.1653671912752	0	lncRNA	5804-1_{1..560}	"transcript_id ""ENST00000585761.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585761.1"" | genecode_v17"	chr17	 43630221	 43630780	+	ENSG00000267198.1	ENST00000585761.1	RP11-798G7.6	RP11-798G7.6-001	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_RDM1:range=chr17:34245346-342572865'pad=0,hg19_refFlat_RDM1:range=chr17:34245346-342572865'pad=0 3'pad=0 strand=- repeatMasking=none,-27.60;hg19_refFlat_RDM1:range=chr17:34245346-342577315'pad=0,hg19_refFlat_RDM1:range=chr17:34245346-342577315'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40"	NA	inter
CUST_46965_PI429285431	1.519613	A	0.9171072	A	1.51835148435341	0	lncRNA	51070-1_{1..1048}	"gi|341915996|ref|XR_132644.1| PREDICTED: Homo sapiens uncharacterized LOC100652823 (LOC100652823), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|341915996|ref|XR_132644.1| PREDICTED: Homo sapiens uncharacterized LOC100652823 (LOC100652823), misc_RNA"	NA	NA	NA	NA	NA	XR_132644.1	NA	NA	NA	NA	NA	Unknown
CUST_15814_PI429285431	3.4424853	P	3.4747367	P	0.977893053692734	0	lncRNA	17504-1_{1..211}	lnc-KRR1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KRR1-2:4	chr12	 76084425	 76084635	-	lnc-KRR1-2	lnc-KRR1-2:4	XLOC_010132	linc-KRR1	NA	NA	NA	inter
CUST_12424_PI429285431	2.3683877	A	2.6379862	A	0.829550376395608	0	lncRNA	14037-1_{1..304}	lnc-POLR2B-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLR2B-5:1	chr4	 59433681	 59433984	+	lnc-POLR2B-5	lnc-POLR2B-5:1	XLOC_003550	linc-LPHN3-5	NA	NA	NA	inter
CUST_48266_PI429285431	0.9168319	A	0.92161596	A	0.996689434346382	0	lncRNA	52129-1_{1..739}	hg19_lincRNAsTranscripts_TCONS_l2_00000057 range=chr1:2514581-2515948 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000057 range=chr1:2514581-2515948 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	  2514581	  2515319	+	NA	NA	NA	NA	MMEL1	NA	chr1:2522081-2525948	inter
CUST_12773_PI429285431	5.626737	P	5.7712226	P	0.904701895962714	0	lncRNA	14396-1_{1..1487}	lnc-DNAJB11-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAJB11-3:1	chr3	186162695	186164181	+	lnc-DNAJB11-3	lnc-DNAJB11-3:1	XLOC_002958	linc-DNAJB11-3	NA	NA	NA	inter
CUST_33998_PI429285431	1.8107493	A	2.5748239	A	0.588830946280606	0	lncRNA	35535-1_{1..1272}	n340812|BC025340|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3275|NULL|0.2883860|-0.1668498	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n340812|BC025340|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3275|NULL|0.2883860|-0.1668498	chr6	  2854890	  2856161	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50927_PI429285431	0.89707816	A	0.8966509	A	1.00029619792231	0	lncRNA	54568-1_{1..980}	hg19_lincRNAsTranscripts_TCONS_l2_00005568 range=chr12:27276137-27338390 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005568 range=chr12:27276137-27338390 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 27276137	 27277116	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24077_PI429285431	0.90963656	A	1.170063	A	0.83484111587237	0	lncRNA	25627-1_{1..468}	lnc-CT62-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CT62-1:5	chr15	 71481155	 71481622	-	lnc-CT62-1	lnc-CT62-1:5	ENSG00000259964.1	RP11-673C5.2	THSD4	NA	chr15:71471155-71491355	inner
CUST_517_PI429285431	0.91121256	A	0.9011981	A	1.00696564273037	0	lncRNA	509-1_{1..733}	"transcript_id ""ENST00000432976.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432976.1"" | genecode_v17"	chr1	188674754	188675486	-	ENSG00000237283.1	ENST00000432976.1	RP11-316I3.1	RP11-316I3.1-001	NA	NA	NA	inter
CUST_12503_PI429285431	1.9386436	A	1.9171358	A	1.015019750505	0	lncRNA	14114-2_{3001..4561}	lnc-SBDS-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SBDS-3:1	chr7	 66830964	 66832524	-	lnc-SBDS-3	lnc-SBDS-3:1	XLOC_006485	linc-SBDS-4	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-60.40;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.10"	NA	inter
CUST_891_PI429285431	1.364047	A	0.89661735	A	1.3826439113524	0	lncRNA	880-1_{1..438}	"transcript_id ""ENST00000415159.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415159.1"" | genecode_v17"	chr2	 59662348	 59662785	+	ENSG00000231815.1	ENST00000415159.1	AC007179.1	AC007179.1-001	NA	NA	NA	inter
CUST_16244_PI429285431	3.0055933	A	3.4324806	P	0.743864987960126	0	lncRNA	17950-1_{1..3000}	lnc-CRIPAK-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRIPAK-1:3	chr4	  1550083	  1553082	+	lnc-CRIPAK-1	lnc-CRIPAK-1:3	XLOC_003422	linc-TACC3	NA	NA	NA	inter
CUST_22794_PI429285431	3.9627447	P	3.6621764	P	1.2316294757952	0	lncRNA	24374-1_{1..336}	lnc-FAM35A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM35A-1:1	chr10	 88856691	 88857026	+	lnc-FAM35A-1	lnc-FAM35A-1:1	ENSG00000240475.1	RP11-96C23.7	FAM35A	"hg19_refFlat_GLUD1:range=chr10:88811508-888545265'pad=0,hg19_refFlat_GLUD1:range=chr10:88811508-888545265'pad=0 3'pad=0 strand=- repeatMasking=none,-111.80;hg19_refFlat_GLUD2:range=chrX:120181539-1201832155'pad=0,hg19_refFlat_GLUD2:range=chrX:120181539-1201832155'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20chr10:88854953-88866746"	NA	inner
CUST_19178_PI429285431	11.274652	P	11.978716	P	0.613840610512658	0	lncRNA	20847-1_{1..1228}	lnc-ERLIN2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERLIN2-1:3	chr8	 37590596	 37591823	+	lnc-ERLIN2-1	lnc-ERLIN2-1:3	ENSG00000253181.1	RP11-863K10.2	ERLIN2	NA	chr8:37594097-37601274	inter
CUST_19591_PI429285431	0.89761573	A	0.9031414	A	0.996177222906246	0	lncRNA	21247-1_{1..491}	lnc-CYB561-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYB561-5:1	chr17	 61416267	 61416757	-	lnc-CYB561-5	lnc-CYB561-5:1	ENSG00000233635.2	AC037445.1	TANC2	"hg19_refFlat_TANC2:range=chr17:61086921-614993165'pad=0,hg19_refFlat_TANC2:range=chr17:61086921-614993165'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60chr17:61406267-61426414"	NA	inner
CUST_24080_PI429285431	2.9113011	A	2.1495466	A	1.69555137675172	0	lncRNA	25630-1_{1..727}	lnc-KIAA0101-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0101-1:4	chr15	 64665355	 64666081	-	lnc-KIAA0101-1	lnc-KIAA0101-1:4	ENSG00000259316.1	CTD-2116N17.1	KIAA0101	NA	chr15:64657193-64673702	inner
CUST_20903_PI429285431	0.9263172	A	0.9498632	A	0.983811619836114	0	lncRNA	22534-1_{1..666}	lnc-BRD7-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BRD7-3:1	chr16	 50155730	 50156395	-	lnc-BRD7-3	lnc-BRD7-3:1	ENSG00000260381.2	RP11-429P3.5	NA	NA	NA	inter
CUST_926_PI429285431	1.9063516	A	3.2285388	P	0.399928167259383	0	lncRNA	916-1_{1..531}	"transcript_id ""ENST00000445514.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445514.1"" | genecode_v17"	chr2	 67440540	 67441070	+	ENSG00000230906.2	ENST00000445514.1	AC023115.1	AC023115.1-001	NA	NA	NA	inter
CUST_16042_PI429285431	1.5726893	A	1.0059718	A	1.48114973965109	0	lncRNA	17741-1_{1..1642}	lnc-NUDT3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUDT3-1:1	chr6	 34247923	 34249564	-	lnc-NUDT3-1	lnc-NUDT3-1:1	XLOC_005690	linc-C6orf1	NUDT3	NA	chr6:34254971-34259098	inter
CUST_78_PI429285431	1.3869851	A	0.89184964	A	1.40945308771878	0	lncRNA	72-1_{1..2185}	"transcript_id ""ENST00000412816.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000412816.3"" | genecode_v17"	chr18	  1268312	  1270496	-	ENSG00000132204.9	ENST00000412816.3	LINC00470	LINC00470-001	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	inter
CUST_45405_PI429285431	0.9966214	A	0.89103925	A	1.07592845682555	0	lncRNA	49833-1_{1..3000}	"gi|193290111|ref|NR_024011.1| Homo sapiens FP944 (LOC286367), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|193290111|ref|NR_024011.1| Homo sapiens FP944 (LOC286367), non-coding RNA"	Chr9	107536633	107539632	+	286367	NR_024011.1	NA	NA	NA	NA	NA	inter
CUST_40318_PI429285431	0.90400136	A	0.90581524	A	0.998743504244785	0	lncRNA	41121-1_{1..822}	n408358|NR_029453|lncRNA|Homosapiens||RefGeneNoncode|NR_029453||-0.2384360|-0.1625069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408358|NR_029453|lncRNA|Homosapiens||RefGeneNoncode|NR_029453||-0.2384360|-0.1625069	chr16	  4838397	  4839218	+	NA	NA	NA	NA	ROGDI	NA	chr16:4846969-4852674	inner
CUST_20774_PI429285431	5.438589	P	5.5419445	P	0.930865413462	0	lncRNA	22407-1_{1..477}	lnc-TXLNB-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TXLNB-3:1	chr6	139560223	139560699	-	lnc-TXLNB-3	lnc-TXLNB-3:1	ENSG00000231329.1	RP1-225E12.2	TXLNB	NA	chr6:139561198-139570442	inter
LNCA_33_P3407863	7.424382	P	7.6044507	P	0.882660963670943	0	lncRNA	XR_110934	XR_110934	XR_110934	100507199	NA	LOC100507199	uncharacterized LOC100507199	ENST00000445330	THC2757969	NA	"PREDICTED: Homo sapiens hypothetical LOC100507199, transcript variant 1 (LOC100507199), miscRNA [XR_110934]"	chrX:151073089-151073030	hs|Xq28	Agilent_HUMAN_G3V2	XR_110934	XR_110934	chrX	151073030	151073089	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49749_PI429285431	0.91337174	A	1.118369	A	0.867540334803299	0	lncRNA	53518-1_{1..1216}	hg19_lincRNAsTranscripts_TCONS_l2_00026544 range=chr7:45763570-45766488 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026544 range=chr7:45763570-45766488 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 45763570	 45764785	-	NA	NA	NA	NA	ADCY1	NA	chr7:45753570-45762715	inter
CUST_1110_PI429285431	3.0088897	A	2.484686	A	1.43813957530765	0	lncRNA	1099-1_{1..452}	"transcript_id ""ENST00000451478.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451478.1"" | genecode_v17"	chr2	145780725	145781176	+	ENSG00000226674.3	ENST00000451478.1	AC074093.1	AC074093.1-008	NA	NA	NA	inter
CUST_32704_PI429285431	1.3086351	A	1.781513	A	0.720525852298083	0	lncRNA	34348-1_{1..2063}	n339335|AK098828|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1767|NULL|-1.0865800|-0.2813043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339335|AK098828|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1767|NULL|-1.0865800|-0.2813043	chr3	 42774068	 42776130	+	NA	NA	NA	NA	CCDC13	"hg19_refFlat_CCDC13:range=chr3:42750472-427998375'pad=0,hg19_refFlat_CCDC13:range=chr3:42750472-427998375'pad=0 3'pad=0 strand=- repeatMasking=none,-97.80chr3:42764068-42798260"	NA	inter
CUST_9167_PI429285431	7.813067	P	8.131601	P	0.801884301483	0	lncRNA	10685-1_{1..3000}	lnc-KIAA1737-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1737-2:1	chr14	 77493912	 77496911	+	lnc-KIAA1737-2	lnc-KIAA1737-2:1	ENSG00000247239	ENST00000499817	IRF2BPL	"hg19_refFlat_IRF2BPL:range=chr14:77491745-774941355'pad=0,hg19_refFlat_IRF2BPL:range=chr14:77491745-774941355'pad=0 3'pad=0 strand=- repeatMasking=none,-111.80;hg19_refFlat_IRF2BP2:range=chr1:234742883-2347452405'pad=0,hg19_refFlat_IRF2BP2:range=chr1:234742883-2347452405'pad=0 3'pad=0 strand=- repeatMasking=none,-94.90chr14:77490886-77495034"	NA	inner
CUST_41579_PI429285431	8.927179	P	9.392181	P	0.724470072947966	0	lncRNA	42900-1_{1..84}	ENST00000577829 ncrna:miRNA chromosome:GRCh37:9:131007226:131007309:-1 gene:ENSG00000264823 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577829 ncrna:miRNA chromosome:GRCh37:9:131007226:131007309:-1 gene:ENSG00000264823 gene_biotype:miRNA transcript_biotype:miRNA	chr9	131007226	131007309	-	ENSG00000264823	ENST00000577829	NA	NA	DNM1	NA	chr9:130997226-131017309	inner
CUST_23235_PI429285431	2.681413	A	2.7107284	A	0.979885170779271	0	lncRNA	24807-1_{1..465}	lnc-STOML3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STOML3-1:1	chr13	 39401548	 39402012	-	lnc-STOML3-1	lnc-STOML3-1:1	ENSG00000225350.1	FREM2-AS1	FREM2	NA	chr13:39391548-39411707	inner
CUST_14030_PI429285431	5.0170164	P	5.5666122	P	0.68321151699773	0	lncRNA	15677-1_{1..3000}	lnc-BMP6-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BMP6-8:2	chr6	  8926047	  8929046	+	lnc-BMP6-8	lnc-BMP6-8:2	XLOC_005160	linc-SLC35B3-BP	NA	NA	NA	inter
CUST_27096_PI429285431	0.90115595	A	0.9088311	A	0.994694117601211	0	lncRNA	28629-1_{1..806}	n324207|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327682|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327682|-1.2632900|-0.2975948	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324207|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327682|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327682|-1.2632900|-0.2975948	chr7	 29642551	 29643356	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22062_PI429285431	4.1044445	P	4.421645	P	0.80262583522864	0	lncRNA	23668-3_{6001..7000}	lnc-GABRB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-GABRB1-1:1	chr4	 47439977	 47440976	+	lnc-GABRB1-1	lnc-GABRB1-1:1	ENSG00000260918.1	RP11-731J8.2	GABRB1	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chr4:47423977-47428462"	NA	inter
CUST_1687_PI429285431	5.900174	P	6.438541	P	0.688549844148437	0	lncRNA	1670-1_{1..2287}	"transcript_id ""ENST00000505448.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505448.2"" | genecode_v17"	chr4	  8356817	  8359103	-	ENSG00000251615.2	ENST00000505448.2	RP11-774O3.3	RP11-774O3.3-001	ACOX3	NA	chr4:8368009-8369103	inter
CUST_48226_PI429285431	0.8913965	A	0.8888109	A	1.00179380830275	0	lncRNA	52089-1_{1..573}	hg19_lincRNAsTranscripts_TCONS_l2_00001496 range=chr1:143217319-143274743 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001496 range=chr1:143217319-143274743 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	143217319	143217891	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19108_PI429285431	0.88596255	A	0.8842381	A	1.00119601230847	0	lncRNA	20795-1_{1..3000}	lnc-HSP90AA1-9:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-HSP90AA1-9:11	chr14	102018559	102021558	-	lnc-HSP90AA1-9	lnc-HSP90AA1-9:11	Dio3os	Dio3as	DIO3	NA	chr14:102027688-102029789	inter
LNCA_21_P0001221	0.89873594	A	0.89260495	A	1.0042587211209	0	lncRNA	BC038730	NA	BC038730	NA	Hs.385776	XLOC_001207	NA	ENST00000420237	THC2606629	NA	"BROAD Institute lincRNA (XLOC_001207), lincRNA [TCONS_00000732]"	chr1:219395842-219395783	hs|1q41	Agilent_HUMAN_G3V2	BC038730	BC038730	chr1	219395783	219395842	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9032_PI429285431	0.90300477	A	0.9230981	A	0.986168905756619	0	lncRNA	10559-1_{1..3000}	lnc-HIATL1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HIATL1-7:1	chr9	 97794314	 97797313	+	lnc-HIATL1-7	lnc-HIATL1-7:1	ENSG00000251631	ENST00000513360	C9orf3	NA	chr9:97784314-97805781	inner
CUST_18350_PI429285431	1.0568053	A	0.99029076	A	1.04718369548859	0	lncRNA	20078-1_{1..662}	lnc-HSCB-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HSCB-1:6	chr22	 28318006	 28318667	+	lnc-HSCB-1	lnc-HSCB-1:6	ENSG00000235954	TTC28-AS1	PITPNB	NA	chr22:28308006-28315255	inter
CUST_15326_PI429285431	1.7558547	A	1.2228608	A	1.44692876795656	0	lncRNA	17005-1_{1..211}	lnc-SHB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SHB-1:1	chr9	 38074307	 38074517	-	lnc-SHB-1	lnc-SHB-1:1	XLOC_007686	linc-SHB	SHB	NA	chr9:38064307-38069210	inter
CUST_34626_PI429285431	0.90510106	A	0.90522844	A	0.99991171080986	0	lncRNA	36079-1_{1..2494}	n341518|AK127959|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3988|NULL|-0.9081500|-0.3918912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341518|AK127959|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3988|NULL|-0.9081500|-0.3918912	chr8	 66736264	 66738757	-	NA	NA	NA	NA	PDE7A	NA	chr8:66726264-66748758	inner
CUST_23699_PI429285431	1.1334099	A	1.9108208	A	0.583412862989892	0	lncRNA	25264-1_{1..536}	lnc-C1orf198-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf198-3:1	chr1	230930859	230931394	-	lnc-C1orf198-3	lnc-C1orf198-3:1	ENSG00000244137.1	RP11-99J16__A.2	CAPN9	"hg19_refFlat_CAPN9:range=chr1:230883243-2309373425'pad=0,hg19_refFlat_CAPN9:range=chr1:230883243-2309373425'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10chr1:230920859-230937749"	NA	inner
CUST_46904_PI429285431	1.1238121	A	1.4338263	A	0.806633819736451	0	lncRNA	51024-2_{3001..3317}	"gi|383276554|ref|NR_002947.2| Homo sapiens testicular cell adhesion molecule 1 homolog (mouse), pseudogene (TCAM1P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|383276554|ref|NR_002947.2| Homo sapiens testicular cell adhesion molecule 1 homolog (mouse), pseudogene (TCAM1P), non-coding RNA"	Chr17	 61937376	 61937692	+	146771	NR_002947.2	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60"	NA	inter
CUST_27267_PI429285431	0.9170194	A	0.9194608	A	0.998309181520268	0	lncRNA	28822-1_{1..597}	n324415|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041896|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041896|-0.8671550|-0.3216641	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324415|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041896|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041896|-0.8671550|-0.3216641	chr6	113959012	113959608	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43585_PI429285431	0.91374856	A	1.108104	A	0.873963273599698	0	lncRNA	48352-6_{15001..18000}	"gi|387942412|ref|NR_049745.1| Homo sapiens HYDIN2, axonemal central pair apparatus protein (pseudogene) (HYDIN2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387942412|ref|NR_049745.1| Homo sapiens HYDIN2, axonemal central pair apparatus protein (pseudogene) (HYDIN2), non-coding RNA"	NA	NA	NA	NA	NA	NR_049745.1	NA	NA	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-59.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20"	NA	Unknown
CUST_5989_PI429285431	3.0553389	P	4.09164	P	0.487575959815407	0	lncRNA	5916-1_{1..3000}	"transcript_id ""ENST00000591283.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591283.1"" | genecode_v17"	chr17	 75554224	 75557223	+	ENSG00000267506.1	ENST00000591283.1	RP11-13K12.1	RP11-13K12.1-002	LOC100652922	NA	chr17:75548387-75550976	inter
CUST_8928_PI429285431	6.0134816	P	5.9197407	P	1.06713366956128	0	lncRNA	10463-1_{1..422}	lnc-STAP1-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STAP1-6:4	chr4	 66558827	 66559248	+	lnc-STAP1-6	lnc-STAP1-6:4	ENSG00000250846	XLOC_003558	NA	NA	NA	inter
CUST_46898_PI429285431	1.1114476	A	0.88553685	A	1.16951531163699	0	lncRNA	51019-1_{1..1780}	"gi|397139656|ref|XR_158918.1| PREDICTED: Homo sapiens CLTC intronic transcript 1 (non-protein coding) (CLTC-IT1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139656|ref|XR_158918.1| PREDICTED: Homo sapiens CLTC intronic transcript 1 (non-protein coding) (CLTC-IT1), misc_RNA"	NA	NA	NA	NA	NA	XR_158918.1	NA	NA	NA	NA	NA	Unknown
CUST_30136_PI429285431	2.7156703	A	2.588302	A	1.09229935900616	0	lncRNA	31910-1_{1..382}	n334783|AJ227894|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245043|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245043|-1.2562400|-0.4022111	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334783|AJ227894|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245043|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245043|-1.2562400|-0.4022111	chr12	 69019049	 69019430	+	NA	NA	NA	NA	RAP1B	NA	chr12:69009049-69029431	inner
CUST_46346_PI429285431	0.8982224	A	0.90894145	A	0.992597654035369	0	lncRNA	50570-1_{1..3000}	"gi|325651869|ref|NR_037933.1| Homo sapiens ADAM metallopeptidase domain 20 pseudogene 1 (ADAM20P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|325651869|ref|NR_037933.1| Homo sapiens ADAM metallopeptidase domain 20 pseudogene 1 (ADAM20P1), non-coding RNA"	Chr14	 70935593	 70938592	-	317760	NR_037933.1	NA	NA	NA	NA	NA	inter
CUST_36213_PI429285431	4.067595	P	4.4348965	P	0.775231178601324	0	lncRNA	37468-1_{1..2544}	n344757|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_306|NULL|-1.6365000|-0.2792544	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344757|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_306|NULL|-1.6365000|-0.2792544	chr22	 25851678	 25854221	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_CRYBB2:range=chr22:25617397-256277395'pad=0,hg19_refFlat_CRYBB2:range=chr22:25617397-256277395'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.50"	NA	inter
CUST_41197_PI429285431	0.89362335	A	0.9011496	A	0.994796784896351	0	lncRNA	42067-1_{1..97}	ENST00000385023 ncrna:miRNA chromosome:GRCh37:5:36147994:36148090:-1 gene:ENSG00000207756 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385023 ncrna:miRNA chromosome:GRCh37:5:36147994:36148090:-1 gene:ENSG00000207756 gene_biotype:miRNA transcript_biotype:miRNA	chr5	 36147994	 36148090	-	ENSG00000207756	ENST00000385023	NA	NA	SKP2	NA	chr5:36152189-36158090	inner
CUST_44161_PI429285431	4.2926035	P	4.6950655	P	0.756566079507841	0	lncRNA	48821-1_{1..1543}	"gi|161169044|ref|NR_004405.1| Homo sapiens laminin, beta 2 pseudogene 1 (LAMB2P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|161169044|ref|NR_004405.1| Homo sapiens laminin, beta 2 pseudogene 1 (LAMB2P1), non-coding RNA"	Chr3	 49190292	 49191834	-	22973	NR_004405.1	NA	NA	NA	NA	NA	inter
CUST_29476_PI429285431	6.9698715	P	7.5645437	P	0.662194897822699	0	lncRNA	31234-1_{1..699}	n332896|AF086090|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066969|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066969|0.3769420|-0.1445509	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332896|AF086090|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066969|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066969|0.3769420|-0.1445509	chr20	  3171160	  3171858	-	NA	NA	NA	NA	DDRGK1	NA	chr20:3171012-3182230	inner
CUST_49704_PI429285431	6.0275664	P	5.9880323	P	1.02778186398662	0	lncRNA	53481-1_{1..232}	hg19_lincRNAsTranscripts_TCONS_l2_00027064 range=chr7:20257215-20259207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027064 range=chr7:20257215-20259207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 20257215	 20257446	+	NA	NA	NA	NA	MACC1	NA	chr7:20247215-20257013	inter
CUST_45216_PI429285431	0.89328575	A	0.8925077	A	1.00053944861393	0	lncRNA	49678-1_{1..3000}	"gi|336455065|ref|NR_038881.1| Homo sapiens uncharacterized LOC286190 (LOC286190), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336455065|ref|NR_038881.1| Homo sapiens uncharacterized LOC286190 (LOC286190), non-coding RNA"	Chr8	 71520812	 71523811	+	286190	NR_038881.1	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_LACTB2:range=chr8:71550095-715813555'pad=0,hg19_refFlat_LACTB2:range=chr8:71550095-715813555'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50"	NA	inter
CUST_31215_PI429285431	5.7450013	P	5.9168453	P	0.88770732072495	0	lncRNA	33007-1_{1..1735}	n337662|AL512721|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|42|NULL|-0.9199940|-0.2526797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n337662|AL512721|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|42|NULL|-0.9199940|-0.2526797	chr1	  7753183	  7754917	-	NA	NA	NA	NA	CAMTA1	NA	chr1:7743183-7764904	inner
CUST_29490_PI429285431	8.383513	P	8.876845	P	0.710382526097045	0	lncRNA	31248-1_{1..351}	n332915|AF086398|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067277|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067277|-0.9540580|-0.0800420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332915|AF086398|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067277|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067277|-0.9540580|-0.0800420	chr9	130265437	130265787	+	NA	NA	NA	NA	FAM129B	NA	chr9:130267618-130275788	inner
CUST_25636_PI429285431	2.4661543	A	1.8764281	A	1.50496110322305	0	lncRNA	27166-1_{1..774}	lnc-NAALAD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NAALAD2-1:1	chr11	 90648038	 90648811	+	lnc-NAALAD2-1	lnc-NAALAD2-1:1	ENSG00000261645.1	RP11-660M18.2	NA	NA	NA	inter
CUST_143_PI429285431	0.8900353	A	0.8902433	A	0.999855835779104	0	lncRNA	134-1_{1..561}	"transcript_id ""ENST00000456897.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456897.1"" | genecode_v17"	chr1	  4000673	  4001233	+	ENSG00000233304.1	ENST00000456897.1	RP13-614K11.1	RP13-614K11.1-002	NA	NA	NA	inter
LNCA_33_P3351840	6.179142	P	6.356829	P	0.88411932442537	0	lncRNA	ENST00000511921	XR_110068	XR_110068	NA	Hs.587351	NA	NA	ENST00000511921	THC2483935	NA	"PREDICTED: Homo sapiens hypothetical LOC100128059 (LOC100128059), miscRNA [XR_110068]"	chr5:169736564-169736505	hs|5q35.1	Agilent_HUMAN_G3V2	ENST00000511921	ENST00000511921	chr5	169736505	169736564	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34590_PI429285431	2.6281066	A	3.4201107	P	0.577541250957992	0	lncRNA	36048-1_{1..1633}	n341474|BC021902|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3944|NULL|-0.9508390|-0.3553068	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341474|BC021902|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3944|NULL|-0.9508390|-0.3553068	chr8	 29672263	 29673895	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39944_PI429285431	1.2516938	A	1.2804551	A	0.980261590353821	0	lncRNA	40819-1_{1..3000}	n406921|NR_024415|lncRNA|Homosapiens||RefGeneNoncode|NR_024415||2.3855700|-0.3764815	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406921|NR_024415|lncRNA|Homosapiens||RefGeneNoncode|NR_024415||2.3855700|-0.3764815	chr2	192542797	192545796	+	NA	NA	NA	NA	OBFC2A	NA	chr2:192542798-192553248	inter
CUST_17869_PI429285431	0.8966097	A	1.2306957	A	0.793286553448611	0	lncRNA	19606-1_{1..1740}	lnc-SEPT7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEPT7-1:1	chr7	 35758680	 35760419	+	lnc-SEPT7-1	lnc-SEPT7-1:1	XLOC_006043	linc-SEPT7-1	NA	NA	NA	inter
CUST_13488_PI429285431	1.1531155	A	0.8951632	A	1.19578025989568	0	lncRNA	15127-1_{1..737}	lnc-AC016251.1-8:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC016251.1-8:14	chr15	 95850608	 95851344	-	lnc-AC016251.1-8	lnc-AC016251.1-8:14	XLOC_011592	linc-RGMA-7	NA	NA	NA	inter
CUST_691_PI429285431	0.91444373	A	0.90536225	A	1.00631465616198	0	lncRNA	684-1_{1..790}	"transcript_id ""ENST00000591060.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591060.1"" | genecode_v17"	chr2	  6766271	  6767060	-	ENSG00000236172.2	ENST00000591060.1	AC097517.2	AC097517.2-040	NA	NA	NA	inter
CUST_44767_PI429285431	1.7140436	A	1.5859797	A	1.09282614159905	0	lncRNA	49309-2_{3001..3513}	"gi|299523027|ref|NR_033806.1| Homo sapiens opsin 5 (OPN5), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299523027|ref|NR_033806.1| Homo sapiens opsin 5 (OPN5), transcript variant 2, non-coding RNA"	Chr6	 47757804	 47758316	+	221391	NR_033806.1	NA	NA	NA	NA	NA	inter
CUST_40526_PI429285431	2.4210486	A	2.1943023	A	1.17019284328394	0	lncRNA	41288-1_{1..1910}	n409611|NR_033994|lncRNA|Homosapiens||RefGeneNoncode|NR_033994||3.1503400|-0.3031873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409611|NR_033994|lncRNA|Homosapiens||RefGeneNoncode|NR_033994||3.1503400|-0.3031873	chr3	172223297	172225206	-	NA	NA	NA	NA	TNFSF10	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00chr3:172223298-172241297"	NA	inter
CUST_43726_PI429285431	9.56703	P	9.258223	P	1.23868297890385	0	lncRNA	48470-1_{1..934}	"gi|221307486|ref|NR_026598.1| Homo sapiens neudesin neurotrophic factor (NENF), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|221307486|ref|NR_026598.1| Homo sapiens neudesin neurotrophic factor (NENF), transcript variant 2, non-coding RNA"	Chr1	212606229	212607162	+	29937	NR_026598.1	NA	NA	NA	NA	NA	inter
CUST_46004_PI429285431	1.051844	A	1.8998922	A	0.555535803736231	0	lncRNA	50289-1_{1..3000}	"gi|343790990|ref|NR_045012.1| Homo sapiens LIM domain only 3 (rhombotin-like 2) (LMO3), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|343790990|ref|NR_045012.1| Homo sapiens LIM domain only 3 (rhombotin-like 2) (LMO3), transcript variant 8, non-coding RNA"	Chr12	 16701306	 16704305	-	55885	NR_045012.1	NA	NA	NA	NA	NA	inter
CUST_18907_PI429285431	2.3378944	A	2.7586174	A	0.747050149737463	0	lncRNA	20598-1_{1..467}	lnc-EPB41L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-EPB41L1-1:1	chr20	 34662778	 34663244	+	lnc-EPB41L1-1	lnc-EPB41L1-1:1	ENSG00000234139	RP4-550H1.4	NA	NA	NA	inter
CUST_6065_PI429285431	1.841001	A	1.4583194	A	1.30376296554444	0	lncRNA	5990-1_{1..3000}	"transcript_id ""ENST00000577439.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577439.1"" | genecode_v17"	chr18	  5240989	  5243988	+	ENSG00000263753.1	ENST00000577439.1	LINC00667	LINC00667-003	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.91;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.71;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_38298_PI429285431	1.0555465	A	1.1441666	A	0.940421807997471	0	lncRNA	39351-1_{1..3000}	n381970|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ujx.1||2.1918300|-0.2142347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381970|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ujx.1||2.1918300|-0.2142347	chr12	132602690	132605689	+	NA	NA	NA	NA	DDX51	"hg19_refFlat_PLAC8:range=chr4:84015840-840290745'pad=0,hg19_refFlat_PLAC8:range=chr4:84015840-840290745'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr12:132621139-132623429"	NA	inter
CUST_29447_PI429285431	3.2219138	P	3.2260685	P	0.997124324108791	0	lncRNA	31204-1_{1..601}	n332849|AF075057|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066079|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066079|-1.1317600|-0.3371141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332849|AF075057|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066079|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066079|-1.1317600|-0.3371141	chr17	 43230591	 43231191	-	NA	NA	NA	NA	ACBD4	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.47;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30chr17:43220591-43221543"	NA	inter
LNCA_21_P0007935	6.9911714	P	7.2628484	P	0.828356098355531	0	lncRNA	ENST00000437748	NA	NA	NA	NA	XLOC_010373	NA	ENST00000437748	NA	NA	"BROAD Institute lincRNA (XLOC_010373), lincRNA [TCONS_00021545]"	chr13:45620861-45657216	hs|13q14.12	Agilent_HUMAN_G3V2	ENST00000437748	ENST00000437748	chr13	 45620861	 45657216	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3440_PI429285431	5.4578648	P	6.072928	P	0.652901291335214	0	lncRNA	3411-1_{1..524}	"transcript_id ""ENST00000448475.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448475.1"" | genecode_v17"	chr9	 82489611	 82490134	-	ENSG00000232494.1	ENST00000448475.1	RP11-403N16.2	RP11-403N16.2-001	NA	NA	NA	inter
CUST_42081_PI429285431	1.3079281	A	0.9139662	A	1.31399692546779	0	lncRNA	44008-1_{1..88}	ENST00000384850 ncrna:miRNA chromosome:GRCh37:8:135812763:135812850:-1 gene:ENSG00000207582 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384850 ncrna:miRNA chromosome:GRCh37:8:135812763:135812850:-1 gene:ENSG00000207582 gene_biotype:miRNA transcript_biotype:miRNA	chr8	135812763	135812850	-	ENSG00000207582	ENST00000384850	NA	NA	NA	NA	NA	inter
CUST_29999_PI429285431	0.88895667	A	0.8998022	A	0.992510637552522	0	lncRNA	31765-1_{1..305}	n334383|S78737|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216818|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216818|1.5130300|-0.0834931	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334383|S78737|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216818|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216818|1.5130300|-0.0834931	chr11	128709665	128709969	-	NA	NA	NA	NA	KCNJ1	NA	chr11:128707915-128719970	inner
CUST_13701_PI429285431	2.255663	A	2.9267209	A	0.628045984557198	0	lncRNA	15341-1_{1..1395}	lnc-ALG2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALG2-1:1	chr9	102161821	102163215	-	lnc-ALG2-1	lnc-ALG2-1:1	XLOC_007805	linc-ALG2-3	NA	NA	NA	inter
CUST_14124_PI429285431	0.893435	A	0.8954467	A	0.998606567546667	0	lncRNA	15774-1_{1..1880}	lnc-FOXO3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-FOXO3-1:4	chr6	109089594	109091473	+	lnc-FOXO3-1	lnc-FOXO3-1:4	XLOC_005421	linc-ARMC2	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20"	NA	inter
CUST_2574_PI429285431	4.953642	P	5.3751435	P	0.746647138956226	0	lncRNA	2562-1_{1..2513}	"transcript_id ""ENST00000455071.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455071.1"" | genecode_v17"	chr6	 86096937	 86099449	-	ENSG00000234155.1	ENST00000455071.1	RP11-30P6.6	RP11-30P6.6-001	NA	"hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60"	NA	inter
CUST_14415_PI429285431	7.3089595	P	7.2795486	P	1.02059529786679	0	lncRNA	16076-1_{1..584}	lnc-CCR7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCR7-1:2	chr17	 38694740	 38695323	-	lnc-CCR7-1	lnc-CCR7-1:2	XLOC_012471	linc-TNS4	NA	NA	NA	inter
CUST_192_PI429201921	3.1957612	P	3.8780932	P	0.623157176675375	0	lncRNA	156-1_{1..3000}	TC01004098.hg.1	 TCONS_l2_00001922-XLOC_l2_000001 // Broad TUCP // linc-OR4F16-4 chr1:+:134772-139697 // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00001923-XLOC_l2_000001 // Broad TUCP // linc-OR4F16-4 chr1:+:134772-139697 // chr1 // 100 // 100 // 0 // --- // 0/// TCONS_l2_00000001-XLOC_l2_000001 // Broad TUCP // linc-OR4F16-4 chr1:+:134766-139723 // chr1 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00000002-XLOC_l2_000001 // Broad TUCP // linc-OR4F16-4 chr1:+:134766-139723 // chr1 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:134766-139723	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00000002-XLOC_l2_000001	linc-OR4F16-4	chr1	   134766	   139723	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3695899	2.121948	A	2.434434	A	0.805252980160372	0	lncRNA	XR_108600	XR_108600	XR_108600	   441072	Hs.482141	FLJ31104	uncharacterized LOC441072	ENST00000500093	THC2601575	NA	"PREDICTED: Homo sapiens hypothetical LOC441072 (FLJ31104), miscRNA [XR_108600]"	chr5:55299329-55299388	hs|5q11.2	Agilent_HUMAN_G3V2	XR_108600	XR_108600	chr5	 55299329	 55299388	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24552_PI429285431	3.2881997	P	3.310704	P	0.98452223893214	0	lncRNA	26102-1_{1..240}	lnc-C16orf47-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C16orf47-1:1	chr16	 73093014	 73093253	-	lnc-C16orf47-1	lnc-C16orf47-1:1	ENSG00000259497.1	RP11-346C20.1	ZFHX3	NA	chr16:73083014-73092534	inter
CUST_24885_PI429285431	4.930161	P	5.4696875	P	0.687996676098685	0	lncRNA	26426-1_{1..528}	lnc-DUSP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DUSP1-2:1	chr5	172124579	172125106	-	lnc-DUSP1-2	lnc-DUSP1-2:1	ENSG00000253445.1	CTB-79E8.2	NEURL1B	NA	chr5:172114579-172118543	inter
CUST_25232_PI429285431	1.3989837	A	1.5554717	A	0.897206514004839	0	lncRNA	26763-1_{1..534}	lnc-HNMT-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HNMT-2:1	chr2	139331422	139331955	+	lnc-HNMT-2	lnc-HNMT-2:1	ENSG00000241772.1	AC092620.2	SPOPL	NA	chr2:139321422-139330805	inter
CUST_36733_PI429285431	2.3054273	A	2.0382392	A	1.20345992406092	0	lncRNA	37909-1_{1..1531}	n345216|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_765|NULL|-1.4512900|-0.3597042	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345216|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_765|NULL|-1.4512900|-0.3597042	chr13	 39849801	 39851331	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15067_PI429285431	1.0998551	A	1.5353094	A	0.739460864124798	0	lncRNA	16730-1_{1..460}	lnc-NDFIP2-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDFIP2-6:3	chr13	 80488851	 80489310	+	lnc-NDFIP2-6	lnc-NDFIP2-6:3	XLOC_010450	linc-SLITRK5-12	NA	NA	NA	inter
CUST_6155_PI429285431	1.4767605	A	1.435364	A	1.02910950213595	0	lncRNA	6081-1_{1..2306}	"transcript_id ""ENST00000591629.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000591629.1"" | genecode_v17"	chr18	 36786888	 36789193	-	ENSG00000267374.1	ENST00000591629.1	LINC00669	LINC00669-001	NA	NA	NA	inter
CUST_7541_PI429285431	0.93003273	A	0.9579817	A	0.980813696031095	0	lncRNA	9178-1_{1..2065}	lnc-SLC39A10-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC39A10-3:1	chr2	197017787	197019851	+	lnc-SLC39A10-3	lnc-SLC39A10-3:1	ENSG00000245478	ENST00000428549	STK17B	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40chr2:197007787-197029605"	NA	inner
CUST_4807_PI429285431	0.9023595	A	1.5159316	A	0.653576447458888	0	lncRNA	4751-1_{1..892}	"transcript_id ""ENST00000556434.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556434.1"" | genecode_v17"	chr14	 50394289	 50395180	-	ENSG00000258946.1	ENST00000556434.1	RP11-58E21.4	RP11-58E21.4-001	NA	NA	NA	inter
CUST_36023_PI429285431	2.971387	A	2.6099045	A	1.28474541191742	0	lncRNA	37354-2_{3001..3519}	n344634|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_182|NULL|-1.3132300|-0.3175841	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344634|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_182|NULL|-1.3132300|-0.3175841	chr12	 66003376	 66003894	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.42;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-21.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20"	NA	inter
CUST_11301_PI429285431	3.1474123	P	3.3042076	P	0.897015425665187	0	lncRNA	12864-1_{1..1164}	lnc-AJAP1-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AJAP1-4:5	chr1	  4484054	  4485217	+	lnc-AJAP1-4	lnc-AJAP1-4:5	XLOC_000033	linc-AJAP1-3	NA	NA	NA	inter
CUST_1532_PI429285431	1.0902039	A	0.9039064	A	1.13783983909866	0	lncRNA	1519-1_{1..576}	"transcript_id ""ENST00000486767.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000486767.1"" | genecode_v17"	chr3	164388666	164389241	-	ENSG00000241636.1	ENST00000486767.1	RP11-71H9.2	RP11-71H9.2-001	NA	NA	NA	inter
CUST_703_PI429285431	2.400415	A	2.8290393	A	0.742969915944592	0	lncRNA	696-1_{1..823}	"transcript_id ""ENST00000591129.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591129.1"" | genecode_v17"	chr2	  6775252	  6776074	-	ENSG00000236172.2	ENST00000591129.1	AC097517.2	AC097517.2-007	NA	NA	NA	inter
LNCA_21_P0009465	1.7013491	A	1.8898	A	0.877547485997882	0	lncRNA	TCONS_00026297	NA	NA	NA	NA	XLOC_012641	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012641), lincRNA [TCONS_00026297]"	chr18:21982587-21982646	hs|18q11.2	Agilent_HUMAN_G3V2	TCONS_00026297	TCONS_00026297	chr18	 21982587	 21982646	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19381_PI429285431	3.9776611	P	3.9039967	P	1.0523863199241	0	lncRNA	21043-1_{1..559}	lnc-MTERFD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTERFD2-1:1	chr2	242003497	242004055	-	lnc-MTERFD2-1	lnc-MTERFD2-1:1	ENSG00000225521.1	AC005237.4	SNED1	NA	chr2:241993497-242013533	inner
CUST_19321_PI429285431	0.8996618	A	0.9076515	A	0.994477268634753	0	lncRNA	20987-1_{1..2968}	lnc-TET2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TET2-4:1	chr4	105616748	105619715	+	lnc-TET2-4	lnc-TET2-4:1	ENSG00000245384.1	AC004053.1	NA	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CXXC4:range=chr4:105393479-1054129595'pad=0,hg19_refFlat_CXXC4:range=chr4:105393479-1054129595'pad=0 3'pad=0 strand=- repeatMasking=none,-96.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70"	NA	inter
CUST_47875_PI429285431	9.2034	P	8.003523	P	2.29720084895505	0	lncRNA	51771-4_{9001..10587}	"gi|410171545|ref|XR_171240.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410171545|ref|XR_171240.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	XR_171240.1	NA	NA	NA	NA	NA	Unknown
CUST_39809_PI429285431	0.89850026	A	1.7016802	A	0.573084610483628	0	lncRNA	40719-1_{1..652}	n406220|NR_003673_6|lncRNA|Homosapiens||RefGeneNoncode|NR_003673_6||2.5571900|-0.0884359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406220|NR_003673_6|lncRNA|Homosapiens||RefGeneNoncode|NR_003673_6||2.5571900|-0.0884359	chr6	 31680117	 31680768	-	NA	NA	NA	NA	ABHD16A	NA	chr6:31670117-31671137	inter
CUST_13760_PI429285431	0.8938681	A	0.8993548	A	0.996204131954657	0	lncRNA	15404-2_{3001..6000}	lnc-PTPN14-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPN14-2:1	chr1	214455057	214458056	-	lnc-PTPN14-2	lnc-PTPN14-2:1	XLOC_001200	linc-ANGEL2-1	SMYD2	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0,hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40chr1:214454565-214462637"	NA	inter
CUST_51681_PI429285431	0.91915303	A	0.91287094	A	1.00436390720329	0	lncRNA	55243-1_{1..630}	hg19_lincRNAsTranscripts_TCONS_l2_00010985 range=chr17:75530540-75532721 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010985 range=chr17:75530540-75532721 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 75530540	 75531169	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16386_PI429285431	0.9134529	A	0.9231214	A	0.993320712751491	0	lncRNA	18084-1_{1..615}	lnc-CTB-78H18.1.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTB-78H18.1.1-1:3	chr5	171167664	171168278	+	lnc-CTB-78H18.1.1-1	lnc-CTB-78H18.1.1-1:3	XLOC_004629	linc-EFCAB9-2	C5orf50	NA	chr5:171157664-171177805	inter
CUST_11326_PI429285431	0.89831775	A	0.8961397	A	1.00151084940129	0	lncRNA	12889-1_{1..1152}	lnc-STK39-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STK39-1:2	chr2	169200567	169201718	-	lnc-STK39-1	lnc-STK39-1:2	XLOC_002383	linc-STK39-1	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
CUST_25057_PI429285431	0.9209417	A	0.9558685	A	0.976081284296726	0	lncRNA	26595-1_{1..390}	lnc-GDPD5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-GDPD5-2:1	chr11	 75349554	 75349943	-	lnc-GDPD5-2	lnc-GDPD5-2:1	ENSG00000254630.1	CTD-2530H12.7	MAP6	NA	chr11:75339554-75359632	inner
CUST_29702_PI429285431	6.91878	P	7.324496	P	0.754861567002656	0	lncRNA	31464-1_{1..575}	n333368|BC002789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086165_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086165_05|-1.0424800|-0.4816043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333368|BC002789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086165_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086165_05|-1.0424800|-0.4816043	chr6	  1950462	  1951036	-	NA	NA	NA	NA	GMDS	NA	chr6:1940462-1962398	inner
CUST_10258_PI429285431	1.1386863	A	1.2799424	A	0.906729356590729	0	lncRNA	11785-1_{1..2160}	lnc-EPHA7-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPHA7-4:1	chr6	 95317577	 95319736	-	lnc-EPHA7-4	lnc-EPHA7-4:1	XLOC_005784	linc-EPHA7-3	NA	NA	NA	inter
CUST_17038_PI429285431	5.341936	P	6.048999	P	0.612565915673019	0	lncRNA	18749-1_{1..3000}	lnc-BNIP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BNIP1-3:1	chr5	172896472	172899471	+	lnc-BNIP1-3	lnc-BNIP1-3:1	XLOC_004640	linc-CPEB4-5	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-58.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-64.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20"	NA	inter
CUST_29953_PI429285431	1.8487071	A	1.4715677	A	1.29876408937978	0	lncRNA	31719-1_{1..569}	n334159|M97708|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196971|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196971|1.6209400|-0.1548963	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334159|M97708|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196971|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196971|1.6209400|-0.1548963	chr14	 22538820	 22539388	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45675_PI429285431	11.15025	P	11.112646	P	1.02640777219554	0	lncRNA	50050-1_{1..1622}	"gi|336595078|ref|NR_038937.1| Homo sapiens uncharacterized LOC100505761 (LOC100505761), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336595078|ref|NR_038937.1| Homo sapiens uncharacterized LOC100505761 (LOC100505761), transcript variant 1, non-coding RNA"	Chr10	104209574	104211195	+	100505761	NR_038937.1	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_C10orf95:range=chr10:104210214-1042112255'pad=0,hg19_refFlat_C10orf95:range=chr10:104210214-1042112255'pad=0 3'pad=0 strand=- repeatMasking=none,-102.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20"	NA	inter
CUST_40258_PI429285431	4.959265	P	4.7752056	P	1.13607603941723	0	lncRNA	41069-2_{3001..4614}	n408184|NR_028326|lncRNA|Homosapiens||RefGeneNoncode|NR_028326||4.2070600|-0.0893089	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408184|NR_028326|lncRNA|Homosapiens||RefGeneNoncode|NR_028326||4.2070600|-0.0893089	chr11	   129986	   131599	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26234_PI429285431	7.963091	P	7.9168468	P	1.03257330080333	0	lncRNA	27741-1_{1..424}	lnc-AC217773.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC217773.1-1:2	chr17	 44273734	 44274157	+	lnc-AC217773.1-1	lnc-AC217773.1-1:2	ENSG00000214401.4	KANSL1-AS1	KIAA1267	NA	chr17:44263734-44283903	inner
CUST_315_PI429285431	3.6882677	P	3.8534386	P	0.89182286884833	0	lncRNA	306-1_{1..2171}	"transcript_id ""ENST00000413541.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413541.1"" | genecode_v17"	chr1	 95051112	 95053282	-	ENSG00000223675.1	ENST00000413541.1	RP11-86H7.6	RP11-86H7.6-001	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30"	NA	inter
CUST_25724_PI429285431	0.88933504	A	0.8913276	A	0.998619815985143	0	lncRNA	27252-1_{1..3000}	lnc-SERF1B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SERF1B-1:2	chr5	 69292979	 69295978	+	lnc-SERF1B-1	lnc-SERF1B-1:2	ENSG00000250763.1	RP11-974F13.6	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30"	NA	inter
CUST_28163_PI429285431	0.8948601	A	0.89360476	A	1.00087051405926	0	lncRNA	29791-1_{1..296}	n325443|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323326|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323326|-1.0835000|-0.2590783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325443|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323326|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323326|-1.0835000|-0.2590783	chr2	  8627911	  8628206	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19156_PI429285431	4.1626163	P	1.1173809	A	8.2548122362106	0	lncRNA	20829-2_{3001..6000}	lnc-OSBP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-OSBP2-3:1	NA	     3000	     5999	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8737_PI429285431	2.78004	A	3.3189416	A	0.688294744807283	0	lncRNA	10280-1_{1..550}	lnc-WDR74-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR74-1:14	chr11	 62622896	 62623445	-	lnc-WDR74-1	lnc-WDR74-1:14	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62632960	inter
CUST_10762_PI429285431	1.464823	A	1.5522215	A	0.941218446071313	0	lncRNA	12298-1_{1..473}	lnc-PRMT6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRMT6-2:1	chr1	107028176	107028648	+	lnc-PRMT6-2	lnc-PRMT6-2:1	XLOC_000329	linc-PRMT6-2	NA	NA	NA	inter
CUST_20796_PI429285431	4.516249	P	4.2468266	P	1.20532516491088	0	lncRNA	22427-3_{6001..8752}	lnc-WDR73-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR73-4:2	chr15	 84968536	 84971287	-	lnc-WDR73-4	lnc-WDR73-4:2	ENSG00000235370.3	CSPG4P5	NA	NA	NA	inter
CUST_3898_PI429285431	0.9084753	A	3.1451943	P	0.212168296345869	0	lncRNA	3867-1_{1..305}	"transcript_id ""ENST00000528553.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000528553.1"" | genecode_v17"	chr11	 29357445	 29357749	-	ENSG00000254530.1	ENST00000528553.1	RP11-460B17.3	RP11-460B17.3-001	NA	NA	NA	inter
CUST_27304_PI429285431	5.0405602	P	5.561794	P	0.696775692250308	0	lncRNA	28862-1_{1..756}	n324456|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041506|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041506|-1.2930500|-0.4103625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324456|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041506|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041506|-1.2930500|-0.4103625	chr6	 90686635	 90687390	+	NA	NA	NA	NA	BACH2	NA	chr6:90676635-90698200	inner
CUST_16595_PI429285431	0.8980757	A	0.88886565	A	1.00640434084029	0	lncRNA	18296-1_{1..928}	lnc-DHX37-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-4:1	chr12	126486435	126487362	-	lnc-DHX37-4	lnc-DHX37-4:1	XLOC_010239	linc-DHX37-21	NA	NA	NA	inter
CUST_19617_PI429285431	1.3327732	A	2.0549262	A	0.606192118527101	0	lncRNA	21273-1_{1..874}	lnc-TAX1BP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TAX1BP3-1:1	chr17	  3560921	  3561794	-	lnc-TAX1BP3-1	lnc-TAX1BP3-1:1	ENSG00000262903.1	RP11-235E17.6	CTNS	"hg19_refFlat_CTNS:range=chr17:3543501-35640285'pad=0,hg19_refFlat_CTNS:range=chr17:3543501-35640285'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.40;hg19_refFlat_CTNS:range=chr17:3543501-35636635'pad=0,hg19_refFlat_CTNS:range=chr17:3543501-35636635'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.40chr17:3550921-3566397"	NA	inner
CUST_17578_PI429285431	1.0065979	A	1.0404761	A	0.97679099137968	0	lncRNA	19303-1_{1..810}	lnc-FAM201A-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM201A-3:2	chr9	 38967969	 38968778	+	lnc-FAM201A-3	lnc-FAM201A-3:2	XLOC_007354	linc-FAM75A1-2	NA	NA	NA	inter
CUST_5540_PI429285431	6.6828265	P	6.4165564	P	1.20269439512796	0	lncRNA	5470-1_{1..511}	"transcript_id ""ENST00000569009.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569009.1"" | genecode_v17"	chr16	 51088639	 51089149	-	ENSG00000260620.1	ENST00000569009.1	RP11-883G14.4	RP11-883G14.4-001	NA	NA	NA	inter
CUST_12968_PI429285431	0.8924141	A	0.89724547	A	0.996656750651862	0	lncRNA	14594-2_{3001..5009}	lnc-CCHCR1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCHCR1-1:4	chr6	 31145015	 31147023	-	lnc-CCHCR1-1	lnc-CCHCR1-1:4	XLOC_005677	linc-POU5F1-1	POU5F1	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chr6:31132114-31138451"	NA	inter
LNCA_21_P0003792	2.5396514	A	2.3765116	A	1.11972138661208	0	lncRNA	TCONS_00008639	NA	NA	NA	NA	XLOC_004144	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004144), lincRNA [TCONS_00008639]"	chr4:164028500-164028441	hs|4q32.2	Agilent_HUMAN_G3V2	TCONS_00008639	TCONS_00008639	chr4	164028441	164028500	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005085	1.8598897	A	1.7642226	A	1.0685593940739	0	lncRNA	TCONS_00012358	NA	NA	NA	NA	XLOC_005917	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005917), lincRNA [TCONS_00012358]"	chr6:166253151-166253092	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012358	TCONS_00012358	chr6	166253092	166253151	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42116_PI429285431	6.8192797	P	4.5780964	P	4.72784684085565	0	lncRNA	44087-1_{1..92}	ENST00000582499 ncrna:miRNA chromosome:GRCh37:9:100462516:100462607:1 gene:ENSG00000266608 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582499 ncrna:miRNA chromosome:GRCh37:9:100462516:100462607:1 gene:ENSG00000266608 gene_biotype:miRNA transcript_biotype:miRNA	chr9	100462516	100462607	+	ENSG00000266608	ENST00000582499	NA	NA	FOXE1	NA	chr9:100461154-100472607	inter
CUST_47836_PI429285431	12.076846	P	12.15852	P	0.944960545810496	0	lncRNA	51743-1_{1..1599}	"gi|410170962|ref|XR_171124.1| PREDICTED: Homo sapiens uncharacterized LOC100996763 (LOC100996763), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170962|ref|XR_171124.1| PREDICTED: Homo sapiens uncharacterized LOC100996763 (LOC100996763), misc_RNA"	NA	NA	NA	NA	NA	XR_171124.1	NA	NA	NA	NA	NA	Unknown
CUST_4843_PI429285431	0.90094316	A	0.90064186	A	1.00020886705519	0	lncRNA	4786-1_{1..1111}	"transcript_id ""ENST00000554160.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554160.1"" | genecode_v17"	chr14	 57532978	 57534088	-	ENSG00000258592.1	ENST00000554160.1	RP11-108M12.3	RP11-108M12.3-001	NA	NA	NA	inter
CUST_25732_PI429285431	1.1112618	A	0.88504106	A	1.16976663086455	0	lncRNA	27259-1_{1..1264}	lnc-C8orf59-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C8orf59-2:1	chr8	 86088034	 86089297	-	lnc-C8orf59-2	lnc-C8orf59-2:1	ENSG00000260493.1	RP11-219B4.7	E2F5	"hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50chr8:86089619-86099297"	NA	inter
CUST_27901_PI429285431	2.9630783	P	4.033512	P	0.47617583051	0	lncRNA	29496-1_{1..711}	n325139|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331859|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331859|-1.3191300|-0.5170988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325139|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331859|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331859|-1.3191300|-0.5170988	chr2	132112784	132113494	+	NA	NA	NA	NA	WTH3DI	NA	chr2:132102784-132121731	inner
CUST_40500_PI429285431	2.9131935	A	2.25992	A	1.57273270801003	0	lncRNA	41265-1_{1..1609}	n409435|NR_033823_4|lncRNA|Homosapiens||RefGeneNoncode|NR_033823_4||-1.1203100|-0.2592419	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409435|NR_033823_4|lncRNA|Homosapiens||RefGeneNoncode|NR_033823_4||-1.1203100|-0.2592419	chr6	  1942684	  1944292	+	NA	NA	NA	NA	GMDS	NA	chr6:1932684-1972670	inner
CUST_25947_PI429285431	7.292826	P	7.759379	P	0.723691634494845	0	lncRNA	27466-1_{1..3000}	lnc-PLA2G15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PLA2G15-1:1	chr16	 68258616	 68261615	+	lnc-PLA2G15-1	lnc-PLA2G15-1:1	ENSG00000263276.1	RP11-96D1.10	NFATC3	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60chr16:68248616-68263162"	NA	inner
CUST_34728_PI429285431	7.230142	P	7.4958816	P	0.831772215990206	0	lncRNA	36174-1_{1..3000}	n341635|BC046445|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4106|NULL|-0.2852130|-0.1103799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341635|BC046445|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4106|NULL|-0.2852130|-0.1103799	chr8	144660531	144663530	+	NA	NA	NA	NA	C8orf73	"hg19_refFlat_EEF1D:range=chr8:144661962-1446690155'pad=0,hg19_refFlat_EEF1D:range=chr8:144661962-1446690155'pad=0 3'pad=0 strand=- repeatMasking=none,-104.00;hg19_refFlat_EEF1D:range=chr8:144661962-1446722515'pad=0,hg19_refFlat_EEF1D:range=chr8:144661962-1446722515'pad=0 3'pad=0 strand=- repeatMasking=none,-104.00chr8:144650531-144654928"	NA	inner
LNCA_21_P0000918	1.1175158	A	0.89263886	A	1.16867755764247	0	lncRNA	BC062745	NA	BC062745	NA	Hs.551637	XLOC_000393	NA	NA	THC2497904	NA	"BROAD Institute lincRNA (XLOC_000393), lincRNA [TCONS_00000055]"	chr1:149232469-149232528	hs|1q21.2	Agilent_HUMAN_G3V2	BC062745	BC062745	chr1	149232469	149232528	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8484_PI429285431	3.9118357	P	3.6695924	P	1.18283045915798	0	lncRNA	10048-1_{1..561}	lnc-BHLHB9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-BHLHB9-1:1	chrX	102139071	102139631	+	lnc-BHLHB9-1	lnc-BHLHB9-1:1	ENSG00000223546	LL0XNC01-157D4.1	NA	NA	NA	inter
CUST_38936_PI429285431	5.6681557	P	6.209446	P	0.687156063900003	0	lncRNA	39924-1_{1..2821}	n385076|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003spc.2||1.8304600|-0.1714214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385076|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003spc.2||1.8304600|-0.1714214	chr7	  5862790	  5865610	+	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10"	NA	inter
CUST_42385_PI429285431	0.90645516	A	0.8959117	A	1.00733493941671	0	lncRNA	45071-1_{1..134}	ENST00000362701 ncrna:snoRNA chromosome:GRCh37:12:40213552:40213685:-1 gene:ENSG00000199571 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362701 ncrna:snoRNA chromosome:GRCh37:12:40213552:40213685:-1 gene:ENSG00000199571 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 40213552	 40213685	-	ENSG00000199571	ENST00000362701	NA	NA	SLC2A13	NA	chr12:40203552-40223685	inner
CUST_5945_PI429285431	0.8939747	A	0.89372337	A	1.0001742238561	0	lncRNA	5874-1_{1..584}	"transcript_id ""ENST00000585537.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585537.1"" | genecode_v17"	chr17	 67473280	 67473863	-	ENSG00000267653.1	ENST00000585537.1	RP1-193H18.3	RP1-193H18.3-001	MAP2K6	NA	chr17:67463280-67507896	inner
CUST_12639_PI429285431	0.89593875	A	0.9927135	A	0.935121188136855	0	lncRNA	14256-1_{1..765}	lnc-GABRA5-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-GABRA5-4:1	chr15	 26361327	 26362091	+	lnc-GABRA5-4	lnc-GABRA5-4:1	XLOC_011189	linc-GABRA5-2	NA	NA	NA	inter
CUST_39524_PI429285431	1.142432	A	1.1289583	A	1.00938300411085	0	lncRNA	40470-1_{1..1729}	n387347|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011crf.1||1.9123700|-0.2167828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387347|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011crf.1||1.9123700|-0.2167828	chr5	 69140556	 69142284	+	NA	NA	NA	NA	LOC100652826	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.10;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-53.71;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-20.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50chr5:69197951-69198535"	NA	inter
LNCA_21_P0004738	0.90090626	A	1.0761324	A	0.885628687427623	0	lncRNA	ENST00000413255	NA	NA	NA	NA	XLOC_005639	NA	ENST00000413255	NA	NA	"BROAD Institute lincRNA (XLOC_005639), lincRNA [TCONS_00011466]"	chr6:21980929-21980870	hs|6p22.3	Agilent_HUMAN_G3V2	ENST00000413255	ENST00000413255	chr6	 21980870	 21980929	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10089_PI429285431	1.3633736	A	0.8844689	A	1.39368517308794	0	lncRNA	11616-1_{1..3000}	lnc-FUT8-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-FUT8-2:2	chr14	 66594473	 66597472	+	lnc-FUT8-2	lnc-FUT8-2:2	XLOC_010856	linc-GPHN-2	NA	NA	NA	inter
CUST_38552_PI429285431	0.88814926	A	1.0146217	A	0.916068610148166	0	lncRNA	39559-1_{1..1862}	n383352|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002lnm.1||1.2081400|-0.1628832	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383352|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002lnm.1||1.2081400|-0.1628832	chr18	 77674211	 77676072	-	NA	NA	NA	NA	PQLC1	NA	chr18:77664211-77686073	inner
CUST_38462_PI429285431	4.9621677	P	5.098527	P	0.909812209150395	0	lncRNA	39482-1_{1..2128}	n382920|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dam.1||-0.9294630|-0.1970679	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382920|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dam.1||-0.9294630|-0.1970679	chr16	 11029865	 11031992	-	NA	NA	NA	NA	CLEC16A	NA	chr16:11038345-11041993	inner
CUST_29084_PI429285431	0.90909415	A	0.9143729	A	0.996347735123829	0	lncRNA	30815-1_{1..627}	n326577|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025521|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025521|-1.0700000|-0.3661055	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326577|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025521|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025521|-1.0700000|-0.3661055	chr1	 69294168	 69294794	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00316479	3.9436529	P	4.20916	P	0.831906272473651	0	lncRNA	AK123416	NA	AK123416	NA	Hs.729217	LOC553137	uncharacterized LOC553137	NA	THC2509612	NA	"BROAD Institute lincRNA (XLOC_l2_013080), lincRNA [TCONS_l2_00025448]"	chr6:107218599-107218540	hs|6q21	Agilent_HUMAN_G3V2	AK123416	AK123416	chr6	107218540	107218599	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14789_PI429285431	0.9059578	A	1.028528	A	0.918549770983948	0	lncRNA	16450-1_{1..322}	lnc-PALM2-AKAP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PALM2-AKAP2-1:1	chr9	113100805	113101126	+	lnc-PALM2-AKAP2-1	lnc-PALM2-AKAP2-1:1	XLOC_007516	linc-MUSK-4	TXNDC8	NA	chr9:113090805-113100125	inter
CUST_2436_PI429285431	2.2979398	A	2.1285806	A	1.1245588798719	0	lncRNA	2428-1_{1..490}	"transcript_id ""ENST00000518902.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518902.1"" | genecode_v17"	chr5	173146249	173146738	-	ENSG00000253686.1	ENST00000518902.1	CTB-43E15.3	CTB-43E15.3-003	NA	NA	NA	inter
CUST_41244_PI429285431	6.823991	P	6.7776155	P	1.03266727980803	0	lncRNA	42170-1_{1..97}	ENST00000583207 ncrna:miRNA chromosome:GRCh37:10:118927189:118927285:-1 gene:ENSG00000266782 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583207 ncrna:miRNA chromosome:GRCh37:10:118927189:118927285:-1 gene:ENSG00000266782 gene_biotype:miRNA transcript_biotype:miRNA	chr10	118927189	118927285	-	ENSG00000266782	ENST00000583207	NA	NA	NA	NA	NA	inter
CUST_42712_PI429285431	1.4481621	A	1.9470437	A	0.707655154066575	0	lncRNA	45644-1_{1..127}	ENST00000516409 ncrna:snoRNA chromosome:GRCh37:6:43511881:43512007:1 gene:ENSG00000252218 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516409 ncrna:snoRNA chromosome:GRCh37:6:43511881:43512007:1 gene:ENSG00000252218 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	 43511881	 43512007	+	ENSG00000252218	ENST00000516409	NA	NA	XPO5	NA	chr6:43501881-43522007	inner
CUST_49565_PI429285431	2.884523	A	1.7701355	A	2.16503072637822	0	lncRNA	53355-1_{1..540}	hg19_lincRNAsTranscripts_TCONS_l2_00024401 range=chr6:122004299-122004989 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024401 range=chr6:122004299-122004989 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	122004299	122004838	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20941_PI429285431	1.6798253	A	1.7217158	A	0.971381220205628	0	lncRNA	22572-1_{1..2128}	lnc-TRIM29-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TRIM29-1:1	chr11	120136575	120138702	-	lnc-TRIM29-1	lnc-TRIM29-1:1	ENSG00000259541.1	RP11-778O17.4	POU2F3	NA	chr11:120126575-120146641	inter
LNCA_21_P0012145	2.1088028	A	1.5996069	A	1.42325670863083	0	lncRNA	ENST00000449841	NA	NA	NA	NA	XLOC_l2_008550	NA	ENST00000449841	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008550), lincRNA [TCONS_l2_00016734]"	chr20:12917783-12917842	hs|20p12.1	Agilent_HUMAN_G3V2	ENST00000449841	ENST00000449841	chr20	 12917783	 12917842	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8310_PI429285431	1.1197016	A	1.151917	A	0.977917455654457	0	lncRNA	9894-1_{1..1572}	lnc-C22orf40-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C22orf40-1:1	chr22	 47084008	 47085579	-	lnc-C22orf40-1	lnc-C22orf40-1:1	ENSG00000249062	ENST00000509577	GRAMD4	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50chr22:47074008-47075688"	NA	inner
CUST_18216_PI429285431	6.3587937	P	5.759036	P	1.51546202395292	0	lncRNA	19951-1_{1..1529}	lnc-AL592284.1-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL592284.1-1:13	chr1	144621447	144622975	+	lnc-AL592284.1-1	lnc-AL592284.1-1:13	ENSG00000225241	NBPF8	NBPF9	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80chr1:144614959-144621685"	NA	inner
CUST_48434_PI429285431	0.92289996	A	2.8133302	A	0.269726609357712	0	lncRNA	52286-1_{1..382}	hg19_lincRNAsTranscripts_TCONS_l2_00001557 range=chr1:156416208-156426368 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001557 range=chr1:156416208-156426368 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	156416208	156416589	-	NA	NA	NA	NA	MEF2D	NA	chr1:156433519-156436368	inter
CUST_5531_PI429285431	8.959784	P	8.682993	P	1.21149714083905	0	lncRNA	5462-1_{1..674}	"transcript_id ""ENST00000576671.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000576671.1"" | genecode_v17"	chr16	 49476821	 49477494	-	ENSG00000262950.1	ENST00000576671.1	RP11-189E14.5	RP11-189E14.5-001	NA	NA	NA	inter
CUST_9123_PI429285431	7.931066	P	7.9924364	P	0.958353357619453	0	lncRNA	10642-1_{1..1600}	lnc-CEP152-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CEP152-1:1	chr15	 49170632	 49172231	-	lnc-CEP152-1	lnc-CEP152-1:1	ENSG00000250663	ENST00000508082	SHC4	"hg19_refFlat_EID1:range=chr15:49170374-491709375'pad=0,hg19_refFlat_EID1:range=chr15:49170374-491709375'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.70chr15:49160632-49182001"	NA	inner
LNCA_21_P0002174	0.9155977	A	0.905808	A	1.00680877799976	0	lncRNA	TCONS_00003582	NA	NA	NA	NA	XLOC_001357	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001357), lincRNA [TCONS_00003582]"	chr2:13430801-13430860	hs|2p24.3	Agilent_HUMAN_G3V2	TCONS_00003582	TCONS_00003582	chr2	 13430801	 13430860	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33920_PI429285431	4.401949	P	4.610324	P	0.865511563690998	0	lncRNA	35461-1_{1..830}	n340714|BC041445|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3177|NULL|-0.6701490|-0.2343489	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340714|BC041445|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3177|NULL|-0.6701490|-0.2343489	chr5	159363625	159364454	-	NA	NA	NA	NA	ADRA1B	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20chr5:159353625-159374732"	NA	inner
CUST_32899_PI429285431	5.891184	P	5.8607078	P	1.0213491936335	0	lncRNA	34525-1_{1..3000}	n339568|AK123831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2010|NULL|-0.7868730|-0.2796029	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339568|AK123831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2010|NULL|-0.7868730|-0.2796029	chr20	  5174914	  5177913	+	NA	NA	NA	NA	CDS2	NA	chr20:5164914-5178533	inner
LNCA_21_P0010481	0.91366905	A	1.4137269	A	0.707078427788217	0	lncRNA	TCONS_00029926	NA	NA	NA	NA	XLOC_014404	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014404), lincRNA [TCONS_00029926]"	chr22:46438499-46436909	hs|22q13.31	Agilent_HUMAN_G3V2	TCONS_00029926	TCONS_00029926	chr22	 46436909	 46438499	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17154_PI429285431	6.2480874	P	6.2880125	P	0.97270544578141	0	lncRNA	18863-1_{1..734}	lnc-PRSS22-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PRSS22-1:2	chr16	  2917462	  2918195	-	lnc-PRSS22-1	lnc-PRSS22-1:2	XLOC_011856	linc-PRSS22	PRSS22	NA	chr16:2907462-2908171	inter
LNCA_21_P0013820	8.669351	P	7.1343074	P	2.89797188802388	0	lncRNA	TCONS_l2_00030539	NA	NA	NA	NA	XLOC_l2_015762	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015762), lincRNA [TCONS_l2_00030539]"	chrX:74959136-74959077	hs|Xq13.3	Agilent_HUMAN_G3V2	TCONS_l2_00030539	TCONS_l2_00030539	chrX	 74959077	 74959136	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45764_PI429285431	5.133036	P	4.497387	P	1.55363650011807	0	lncRNA	50109-1_{1..1161}	"gi|303304951|ref|NR_036539.1| Homo sapiens uncharacterized LOC644656 (LOC644656), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|303304951|ref|NR_036539.1| Homo sapiens uncharacterized LOC644656 (LOC644656), non-coding RNA"	Chr11	  9481103	  9482263	-	644656	NR_036539.1	NA	NA	NA	NA	NA	inter
CUST_50130_PI429285431	7.19621	P	7.405241	P	0.865118101105916	0	lncRNA	53858-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00029068 range=chr9:132250802-132272182 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029068 range=chr9:132250802-132272182 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132250802	132253801	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70"	NA	inter
CUST_26803_PI429285431	1.6661313	A	2.1446862	A	0.717696156632029	0	lncRNA	28315-1_{1..460}	n323871|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056584|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056584|-1.0824000|-0.2099116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323871|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056584|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056584|-1.0824000|-0.2099116	chrX	 51261681	 51262140	-	NA	NA	NA	NA	NA	"hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70"	NA	inter
CUST_20726_PI429285431	2.3725593	A	2.278235	A	1.06756528654155	0	lncRNA	22361-1_{1..1276}	lnc-CALCOCO2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CALCOCO2-2:1	chr17	 46801690	 46802965	+	lnc-CALCOCO2-2	lnc-CALCOCO2-2:1	ENSG00000229637.2	HOXB-AS5	PRAC	NA	chr17:46799081-46799882	inner
CUST_31039_PI429285431	4.1204605	P	3.2910702	A	1.77693425018398	0	lncRNA	32828-1_{1..242}	n337256|BC127775|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389402|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389402|-1.1344900|-0.1459774	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337256|BC127775|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389402|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389402|-1.1344900|-0.1459774	chr11	118344802	118345043	-	NA	NA	NA	NA	MLL	"hg19_refFlat_MLL:range=chr11:118307228-1183928875'pad=0,hg19_refFlat_MLL:range=chr11:118307228-1183928875'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60chr11:118334802-118355044"	NA	inner
CUST_21872_PI429285431	0.8910633	A	0.89852667	A	0.994840144153343	0	lncRNA	23482-1_{1..948}	lnc-PACRGL-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PACRGL-4:1	chr4	 21720100	 21721047	+	lnc-PACRGL-4	lnc-PACRGL-4:1	ENSG00000248343.1	RP11-556G22.2	KCNIP4	NA	chr4:21710100-21730649	inner
CUST_28897_PI429285431	8.991545	P	8.730369	P	1.19845521665215	0	lncRNA	30613-1_{1..546}	n326320|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098155|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098155|-1.1605500|-0.1621889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326320|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098155|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098155|-1.1605500|-0.1621889	chr1	175629437	175629982	-	NA	NA	NA	NA	TNR	NA	chr1:175619437-175712752	inner
CUST_15954_PI429285431	0.98302317	A	0.9009749	A	1.05851981046543	0	lncRNA	17651-1_{1..301}	lnc-GTF2B-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GTF2B-5:1	chr1	 88442144	 88442444	-	lnc-GTF2B-5	lnc-GTF2B-5:1	XLOC_000902	linc-SEP15-2	NA	NA	NA	inter
CUST_25477_PI429285431	2.7125552	A	2.5983236	A	1.08239839111795	0	lncRNA	27007-1_{1..545}	lnc-EAPP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EAPP-1:1	chr14	 35011288	 35011832	-	lnc-EAPP-1	lnc-EAPP-1:1	ENSG00000259002.1	RP11-671J11.7	EAPP	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40chr14:35001288-35008943"	NA	inter
LNCA_21_P0010538	0.91678107	A	0.92496866	A	0.994340868630105	0	lncRNA	TCONS_l2_00000435	NA	NA	NA	NA	XLOC_l2_000324	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000324), lincRNA [TCONS_l2_00000435]"	chr1:98539094-98659110	hs|1p21.3	Agilent_HUMAN_G3V2	TCONS_l2_00000435	TCONS_l2_00000435	chr1	 98539094	 98659110	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27194_PI429285431	0.90037566	A	0.90971285	A	0.993548851662985	0	lncRNA	28736-1_{1..772}	n324326|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042903|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042903|-0.2446220|-0.1450594	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324326|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042903|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042903|-0.2446220|-0.1450594	chr6	159724552	159725323	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014590	0.9173636	A	1.0899358	A	0.887259363715487	0	lncRNA	XR_110417	XR_110417	XR_110417	NA	NA	LOC100507259	uncharacterized LOC100507259	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507259 (LOC100507259), miscRNA [XR_110417]"	chr10:75256803-75256862	hs|10q22.2	Agilent_HUMAN_G3V2	XR_110417	XR_110417	chr10	 75256803	 75256862	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23880_PI429285431	0.89383215	A	0.90010995	A	0.995658014424667	0	lncRNA	25439-1_{1..591}	lnc-SLC6A4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC6A4-3:1	chr17	 28392652	 28393242	-	lnc-SLC6A4-3	lnc-SLC6A4-3:1	ENSG00000265289.1	AC104984.4	EFCAB5	"hg19_refFlat_EFCAB5:range=chr17:28268815-284350425'pad=0,hg19_refFlat_EFCAB5:range=chr17:28268815-284350425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30chr17:28382652-28402695"	NA	inter
CUST_27692_PI429285431	0.91161835	A	0.9110862	A	1.00036892630871	0	lncRNA	29270-1_{1..437}	n324899|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158057|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158057|-1.0955200|-0.5398757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324899|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158057|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158057|-1.0955200|-0.5398757	chr21	 17048708	 17049144	-	NA	NA	NA	NA	USP25	NA	chr21:17102496-17119878	inner
CUST_13504_PI429285431	0.90318865	A	0.90965176	A	0.99553013324927	0	lncRNA	15144-1_{1..2255}	lnc-CIDEA-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CIDEA-2:1	chr18	 12222799	 12225053	+	lnc-CIDEA-2	lnc-CIDEA-2:1	XLOC_012630	linc-CIDEA-1	NA	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.40;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10"	NA	inter
CUST_5050_PI429285431	6.562978	P	6.8786654	P	0.803468071598344	0	lncRNA	4990-1_{1..789}	"transcript_id ""ENST00000555882.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555882.1"" | genecode_v17"	chr14	102024890	102025678	-	ENSG00000258498.1	ENST00000555882.1	DIO3OS	DIO3OS-015	DIO3	NA	chr14:102027688-102029789	inter
CUST_41387_PI429285431	1.2283521	A	1.0728405	A	1.11381652324636	0	lncRNA	42490-1_{1..124}	ENST00000384998 ncrna:miRNA chromosome:GRCh37:X:146312238:146312361:-1 gene:ENSG00000207731 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384998 ncrna:miRNA chromosome:GRCh37:X:146312238:146312361:-1 gene:ENSG00000207731 gene_biotype:miRNA transcript_biotype:miRNA	chrX	146312238	146312361	-	ENSG00000207731	ENST00000384998	NA	NA	NA	NA	NA	inter
LNCA_21_P0010180	0.91705203	A	0.92071664	A	0.99746310927063	0	lncRNA	ENST00000440372	NA	NA	NA	NA	XLOC_014014	NA	ENST00000440372	NA	NA	"BROAD Institute lincRNA (XLOC_014014), lincRNA [TCONS_00028876]"	chr21:20290384-20290325	hs|21q21.1	Agilent_HUMAN_G3V2	ENST00000440372	ENST00000440372	chr21	 20290325	 20290384	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6544_PI429285431	1.3990494	A	1.0023662	A	1.3164778062368	0	lncRNA	6491-1_{1..620}	"transcript_id ""ENST00000601565.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601565.1"" | genecode_v17"	chr19	 47849965	 47850584	+	ENSG00000269619.1	ENST00000601565.1	CTD-3023J11.2	CTD-3023J11.2-001	GPR77	NA	chr19:47840371-47845272	inter
CUST_16885_PI429285431	7.161717	P	7.066524	P	1.0682083006251	0	lncRNA	18594-1_{1..367}	lnc-TMEM132B-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132B-3:4	chr12	126585235	126585601	+	lnc-TMEM132B-3	lnc-TMEM132B-3:4	XLOC_009935	linc-TMEM132C-14	NA	NA	NA	inter
CUST_45400_PI429285431	6.3172703	P	5.102207	P	2.32150968559452	0	lncRNA	49829-1_{1..2993}	"gi|215276941|ref|NR_024532.1| Homo sapiens asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae) (ALG2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|215276941|ref|NR_024532.1| Homo sapiens asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae) (ALG2), transcript variant 2, non-coding RNA"	Chr9	101978707	101981699	-	85365	NR_024532.1	NA	NA	NA	NA	NA	inter
CUST_35147_PI429285431	2.331471	A	0.89889497	A	2.69928260575261	0	lncRNA	36549-1_{1..2272}	n342118|AK023584|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4601|NULL|-0.9186430|-0.3858069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342118|AK023584|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4601|NULL|-0.9186430|-0.3858069	chr6	125405211	125407482	+	NA	NA	NA	NA	RNF217	NA	chr6:125395211-125404661	inter
LNCA_21_P0013237	2.6166823	A	3.1040277	P	0.713336450368193	0	lncRNA	TCONS_l2_00025988	NA	NA	NA	NA	XLOC_l2_013465	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013465), lincRNA [TCONS_l2_00025988]"	chr7:66006707-66006766	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025988	TCONS_l2_00025988	chr7	 66006707	 66006766	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32392_PI429285431	5.666257	P	4.475785	P	2.28227399084712	0	lncRNA	34069-1_{1..1046}	n338983|U70667|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1411|NULL|4.0077600|-0.0586518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338983|U70667|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1411|NULL|4.0077600|-0.0586518	chr2	153532918	153533963	-	NA	NA	NA	NA	ARL6IP6	NA	chr2:153574423-153583887	inner
CUST_34526_PI429285431	0.9376608	A	0.96932715	A	0.978289694933246	0	lncRNA	35989-2_{3001..3355}	n341405|AK125572|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3875|NULL|-1.2719600|-0.3168320	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341405|AK125572|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3875|NULL|-1.2719600|-0.3168320	chr13	100507863	100508217	-	NA	NA	NA	NA	CLYBL	NA	chr13:100494863-100549388	inner
CUST_881_PI429285431	0.9200907	A	0.92703223	A	0.995200054784716	0	lncRNA	871-1_{1..333}	"transcript_id ""ENST00000418451.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418451.1"" | genecode_v17"	chr2	 53091373	 53091705	+	ENSG00000232604.1	ENST00000418451.1	AC010967.3	AC010967.3-001	NA	NA	NA	inter
CUST_33485_PI429285431	0.89889395	A	0.90564704	A	0.995330052976414	0	lncRNA	35057-1_{1..876}	n340224|BC032916|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2685|NULL|-1.0156500|-0.4273783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340224|BC032916|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2685|NULL|-1.0156500|-0.4273783	chr4	135226556	135227431	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17754_PI429285431	1.3006642	A	1.2901453	A	1.00731779100016	0	lncRNA	19485-1_{1..933}	lnc-CADM2-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CADM2-3:8	chr3	 84058064	 84058996	+	lnc-CADM2-3	lnc-CADM2-3:8	XLOC_002722	linc-CADM2-2	NA	NA	NA	inter
LNCA_21_P0005512	0.90879023	A	0.9068897	A	1.00131821509379	0	lncRNA	TCONS_00013884	NA	NA	NA	NA	XLOC_006521	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006521), lincRNA [TCONS_00013884]"	chr7:91010081-91005395	hs|7q21.13	Agilent_HUMAN_G3V2	TCONS_00013884	TCONS_00013884	chr7	 91005395	 91010081	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4550_PI429285431	0.9260569	A	0.9330352	A	0.995174690422428	0	lncRNA	4498-1_{1..349}	"transcript_id ""ENST00000428785.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428785.1"" | genecode_v17"	chr13	 19836937	 19837285	-	ENSG00000232243.1	ENST00000428785.1	RP11-408E5.5	RP11-408E5.5-002	NA	NA	NA	inter
CUST_6288_PI429285431	4.954265	P	5.232968	P	0.824331768309326	0	lncRNA	6212-1_{1..363}	"transcript_id ""ENST00000592499.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592499.1"" | genecode_v17"	chr18	 77552726	 77553088	+	ENSG00000267780.1	ENST00000592499.1	RP11-154H12.3	RP11-154H12.3-001	NA	NA	NA	inter
LNCA_21_P0009752	6.5178294	P	5.926263	P	1.50688195020678	0	lncRNA	TCONS_00027258	NA	NA	NA	NA	XLOC_013282	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013282), lincRNA [TCONS_00027258]"	chr19:28262583-28237201	hs|19q11	Agilent_HUMAN_G3V2	TCONS_00027258	TCONS_00027258	chr19	 28237201	 28262583	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014349	1.4712981	A	2.3746996	A	0.534624737924985	0	lncRNA	XR_109392	XR_109392	XR_109392	NA	NA	LOC100506252	uncharacterized LOC100506252	NA	THC2685646	NA	"PREDICTED: Homo sapiens hypothetical LOC100506252 (LOC100506252), miscRNA [XR_109392]"	chr17:45380902-45380843	hs|17q21.32	Agilent_HUMAN_G3V2	XR_109392	XR_109392	chr17	 45380843	 45380902	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46460_PI429285431	0.89334095	A	0.8890402	A	1.00298550049307	0	lncRNA	50661-2_{3001..3492}	"gi|345842468|ref|NR_027513.2| Homo sapiens cyclin D-type binding-protein 1 (CCNDBP1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|345842468|ref|NR_027513.2| Homo sapiens cyclin D-type binding-protein 1 (CCNDBP1), transcript variant 3, non-coding RNA"	Chr15	 43480466	 43480957	+	23582	NR_027513.2	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90"	NA	inter
CUST_23553_PI429285431	0.904754	A	0.91211885	A	0.994908082972603	0	lncRNA	25120-1_{1..2840}	lnc-NPY5R-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NPY5R-4:1	chr4	162306983	162309822	+	lnc-NPY5R-4	lnc-NPY5R-4:1	ENSG00000249568.1	RP11-234O6.2	FSTL5	"hg19_refFlat_FSTL5:range=chr4:162306899-1630325485'pad=0,hg19_refFlat_FSTL5:range=chr4:162306899-1630325485'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30chr4:162305049-162319569"	NA	inner
CUST_9524_PI429285431	7.220603	P	7.4392066	P	0.859396853433825	0	lncRNA	11032-1_{1..1560}	lnc-C17orf77-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C17orf77-1:3	chr17	 72603008	 72604567	+	lnc-C17orf77-1	lnc-C17orf77-1:3	XLOC_012307	linc-RAB37	CD300E	NA	chr17:72606022-72613313	inter
CUST_29819_PI429285431	1.4348598	A	1.8531988	A	0.748285642900403	0	lncRNA	31582-1_{1..259}	n333538|BC050667|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000099253|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000099253|-1.1231800|-0.1015203	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333538|BC050667|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000099253|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000099253|-1.1231800|-0.1015203	chr10	 94352918	 94353176	+	NA	NA	NA	NA	KIF11	NA	chr10:94352825-94363177	inner
CUST_39031_PI429285431	0.8981945	A	0.88948274	A	1.00605680056886	0	lncRNA	40011-1_{1..1595}	n385401|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xty.1||1.2670700|-0.2454546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n385401|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xty.1||1.2670700|-0.2454546	chr8	 60032504	 60034098	+	NA	NA	NA	NA	TOX	NA	chr8:60022504-60031767	inter
CUST_16367_PI429285431	7.466811	P	7.8415756	P	0.771231241807619	0	lncRNA	18065-1_{1..3000}	lnc-SLCO5A1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLCO5A1-3:1	chr8	 70238898	 70241897	-	lnc-SLCO5A1-3	lnc-SLCO5A1-3:1	XLOC_007118	linc-CPA6-5	NA	NA	NA	inter
CUST_19145_PI429285431	6.3800917	P	6.6010528	P	0.857993664564905	0	lncRNA	20819-1_{1..1554}	lnc-ACTA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-ACTA2-1:1	chr10	 90751178	 90752731	-	lnc-ACTA2-1	lnc-ACTA2-1:1	SAF	FAS-AS	ACTA2	NA	chr10:90741178-90751147	inner
CUST_47133_PI429285431	10.205749	P	9.892054	P	1.24288688254789	0	lncRNA	51214-1_{1..1518}	"gi|396941682|ref|NR_073052.1| Homo sapiens death effector domain containing 2 (DEDD2), transcript variant 10, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|396941682|ref|NR_073052.1| Homo sapiens death effector domain containing 2 (DEDD2), transcript variant 10, non-coding RNA"	Chr19	 42702745	 42704262	-	162989	NR_073052.1	NA	NA	NA	NA	NA	inter
CUST_51821_PI429285431	2.9627652	A	2.6207547	A	1.26752174708167	0	lncRNA	55374-1_{1..477}	hg19_lincRNAsTranscripts_TCONS_l2_00012482 range=chr19:36087585-36092394 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012482 range=chr19:36087585-36092394 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 36087585	 36088061	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24260_PI429285431	5.93926	P	6.882703	P	0.519990438295488	0	lncRNA	25811-1_{1..1274}	lnc-RDH5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RDH5-1:1	chr12	 56123446	 56124719	+	lnc-RDH5-1	lnc-RDH5-1:1	ENSG00000258056.1	RP11-644F5.11	RDH5	NA	chr12:56114151-56118526	inner
CUST_38665_PI429285431	2.7058089	A	3.5716052	P	0.548743442645982	0	lncRNA	39666-1_{1..3000}	n383953|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yew.1||-0.0124515|-0.0912994	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383953|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yew.1||-0.0124515|-0.0912994	chr20	 62023922	 62026921	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005664	0.89926517	A	0.89420986	A	1.00351022031731	0	lncRNA	TCONS_00014636	NA	NA	NA	NA	XLOC_006730	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006730), lincRNA [TCONS_00014636]"	chr8:18953161-19000136	hs|8p22	Agilent_HUMAN_G3V2	TCONS_00014636	TCONS_00014636	chr8	 18953161	 19000136	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001282	0.8989434	A	0.89374	A	1.00361323408796	0	lncRNA	TCONS_00000887	NA	NA	NA	NA	XLOC_000138	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000138), lincRNA [TCONS_00000887]"	chr1:36134719-36134778	hs|1p34.3	Agilent_HUMAN_G3V2	TCONS_00000887	TCONS_00000887	chr1	 36134719	 36134778	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8890_PI429285431	2.894548	A	3.09232	A	0.871896020966713	0	lncRNA	10427-1_{1..557}	lnc-ZBED5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZBED5-1:3	chr11	 10920679	 10921235	-	lnc-ZBED5-1	lnc-ZBED5-1:3	ENSG00000250041	CTD-2003C8.2	NA	NA	NA	inter
CUST_35721_PI429285431	2.5091605	A	2.992725	A	0.715208357396097	0	lncRNA	37139-1_{1..213}	n342887|AF534827|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5394|NULL|1.1507500|-0.0229093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n342887|AF534827|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5394|NULL|1.1507500|-0.0229093	chr6	 41217114	 41217326	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43590_PI429285431	9.849248	P	9.281239	P	1.48247625794213	0	lncRNA	48355-1_{1..2851}	"gi|373432624|ref|NR_046070.1| Homo sapiens chromodomain helicase DNA binding protein 1-like (CHD1L), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|373432624|ref|NR_046070.1| Homo sapiens chromodomain helicase DNA binding protein 1-like (CHD1L), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NR_046070.1	NA	NA	NA	NA	NA	Unknown
CUST_32209_PI429285431	0.90309525	A	0.9091412	A	0.995818035672449	0	lncRNA	33904-2_{3001..6000}	n338785|BX647243|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1207|NULL|-1.1208300|-0.3551080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338785|BX647243|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1207|NULL|-1.1208300|-0.3551080	chr13	 78496823	 78499822	+	NA	NA	NA	NA	EDNRB	NA	chr13:78483823-78493903	inter
CUST_50376_PI429285431	8.568074	P	8.922352	P	0.782261029488861	0	lncRNA	54088-3_{6001..7050}	hg19_lincRNAsTranscripts_TCONS_l2_00030323 range=chrX:106773652-106848480 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030323 range=chrX:106773652-106848480 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	106779652	106780701	+	NA	NA	NA	NA	FRMPD3	NA	chrX:106765680-106848479	inter
CUST_9578_PI429285431	0.8862325	A	2.0414252	A	0.449006208918851	0	lncRNA	11094-1_{1..442}	lnc-EXOC3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXOC3-2:1	chr5	   526527	   526968	+	lnc-EXOC3-2	lnc-EXOC3-2:1	XLOC_004238	linc-CEP72-1	SLC9A3	NA	chr5:516527-524549	inter
CUST_30460_PI429285431	9.296853	P	9.3436575	P	0.968078202547999	0	lncRNA	32240-1_{1..517}	n335603|CR597100|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000276295_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000276295_04|-1.2192300|-0.1666457	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335603|CR597100|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000276295_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000276295_04|-1.2192300|-0.1666457	chrY	  2354465	  2354981	-	NA	NA	NA	NA	DHRSX	NA	chrY:2344465-2364982	inner
CUST_5960_PI429285431	2.7142327	A	2.6089563	A	1.07570045973672	0	lncRNA	5889-1_{1..519}	"transcript_id ""ENST00000538810.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000538810.1"" | genecode_v17"	chr17	 70026795	 70027313	+	ENSG00000256124.1	ENST00000538810.1	RP11-84E24.3	RP11-84E24.3-002	NA	NA	NA	inter
CUST_22628_PI429285431	7.197476	P	7.4876966	P	0.817777004131759	0	lncRNA	24214-1_{1..774}	lnc-GNAI1-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNAI1-2:7	chr7	 79100099	 79100872	+	lnc-GNAI1-2	lnc-GNAI1-2:7	ENSG00000234456.2	MAGI2-AS3	NA	NA	NA	inter
LNCA_21_P0008215	5.6013117	P	5.0561075	P	1.45922686954981	0	lncRNA	TCONS_00022114	NA	NA	NA	NA	XLOC_010720	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010720), lincRNA [TCONS_00022114]"	chr13:110784410-110784351	hs|13q34	Agilent_HUMAN_G3V2	TCONS_00022114	TCONS_00022114	chr13	110784351	110784410	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23283_PI429285431	1.0862451	A	1.8052721	A	0.60750702636799	0	lncRNA	24854-1_{1..554}	lnc-NBPF9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NBPF9-1:1	chr1	144865739	144866292	+	lnc-NBPF9-1	lnc-NBPF9-1:1	ENSG00000255148.1	RP4-791M13.4	PDE4DIP	NA	chr1:144855739-144875800	inner
CUST_14850_PI429285431	0.90360963	A	0.9044248	A	0.999435126813787	0	lncRNA	16513-1_{1..458}	lnc-TMSB4X-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMSB4X-1:1	chrX	 13103824	 13104281	+	lnc-TMSB4X-1	lnc-TMSB4X-1:1	XLOC_007929	linc-EGFL6-2	NA	NA	NA	inter
CUST_30103_PI429285431	0.9063578	A	0.90611756	A	1.00016653554416	0	lncRNA	31875-1_{1..426}	n334646|AB107271|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000242307|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000242307|0.4491470|-0.2945049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334646|AB107271|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000242307|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000242307|0.4491470|-0.2945049	chr3	 12330337	 12330762	+	NA	NA	NA	NA	PPARG	NA	chr3:12329349-12431333	inner
CUST_38053_PI429285431	0.9188815	A	0.92152524	A	0.998169177077552	0	lncRNA	39131-1_{1..3000}	n377625|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030013||-0.0349141|-0.2661912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377625|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030013||-0.0349141|-0.2661912	chr6	  4275022	  4278021	+	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90"	NA	inter
CUST_44086_PI429285431	3.6475627	P	4.8119535	P	0.446152614690276	0	lncRNA	48754-1_{1..3000}	"gi|396578184|ref|NR_073043.1| Homo sapiens IQ motif containing with AAA domain 1 (IQCA1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|396578184|ref|NR_073043.1| Homo sapiens IQ motif containing with AAA domain 1 (IQCA1), transcript variant 4, non-coding RNA"	Chr2	237232790	237235789	-	79781	NR_073043.1	NA	NA	NA	NA	NA	inter
CUST_2662_PI429285431	0.9079405	A	0.9189541	A	0.992395019530711	0	lncRNA	2648-1_{1..773}	"transcript_id ""ENST00000427015.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427015.1"" | genecode_v17"	chr6	147981839	147982611	+	ENSG00000227681.1	ENST00000427015.1	RP11-307P5.1	RP11-307P5.1-004	NA	NA	NA	inter
CUST_44526_PI429285431	6.751219	P	6.5844316	P	1.12255598656483	0	lncRNA	49120-1_{1..2783}	"gi|300796591|ref|NR_034085.1| Homo sapiens uncharacterized LOC648987 (LOC648987), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300796591|ref|NR_034085.1| Homo sapiens uncharacterized LOC648987 (LOC648987), transcript variant 1, non-coding RNA"	Chr5	 43016150	 43018932	-	648987	NR_034085.1	NA	NA	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-95.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20"	NA	inter
CUST_50496_PI429285431	0.90564203	A	1.0489142	A	0.905463147778685	0	lncRNA	54192-1_{1..645}	hg19_lincRNAsTranscripts_TCONS_l2_00030566 range=chrX:102906453-102926745 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030566 range=chrX:102906453-102926745 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	102906453	102907097	-	NA	NA	NA	NA	MORF4L2	NA	chrX:102930426-102936745	inter
CUST_35447_PI429285431	1.4214808	A	2.3230872	A	0.53529036867356	0	lncRNA	36854-1_{1..2610}	n342523|BC063890|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5018|NULL|-1.0695700|-0.3397867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342523|BC063890|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5018|NULL|-1.0695700|-0.3397867	chr21	 14435261	 14437870	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60"	NA	inter
CUST_2810_PI429285431	10.554087	P	10.337994	P	1.16158360831382	0	lncRNA	2793-2_{3001..3116}	"transcript_id ""ENST00000577700.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577700.1"" | genecode_v17"	chr7	 45025622	 45025737	-	ENSG00000232956.3	ENST00000577700.1	SNHG15	SNHG15-002	MYO1G	NA	chr7:45012622-45018704	inter
CUST_27743_PI429285431	0.92105556	A	0.929527	A	0.994145251480473	0	lncRNA	29325-1_{1..503}	n324960|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079677|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079677|-0.9041390|-0.1745798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324960|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079677|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079677|-0.9041390|-0.1745798	chr20	 48222493	 48222995	+	NA	NA	NA	NA	LOC728671	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80chr20:48212493-48233314"	NA	inter
CUST_41051_PI429285431	1.3016818	A	0.8934964	A	1.32701566374256	0	lncRNA	41712-1_{1..1209}	n411721|NR_044999|lncRNA|Homosapiens||RefGeneNoncode|NR_044999||4.6903000|-0.1684777	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411721|NR_044999|lncRNA|Homosapiens||RefGeneNoncode|NR_044999||4.6903000|-0.1684777	chr11	  3411936	  3413144	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00327415	6.1354733	P	6.273353	P	0.908853898621845	0	lncRNA	TCONS_00012240	NA	NA	NA	NA	XLOC_005798	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005798), lincRNA [TCONS_00012240]"	chr6:106939174-106939115	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00012240	TCONS_00012240	chr6	106939115	106939174	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26275_PI429285431	1.0130062	A	1.6328981	A	0.650719683806298	0	lncRNA	27781-1_{1..593}	lnc-TMEM178-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM178-1:7	chr2	 39851239	 39851831	+	lnc-TMEM178-1	lnc-TMEM178-1:7	ENSG00000231312.2	AC007246.3	NA	NA	NA	inter
CUST_34543_PI429285431	2.6297452	A	2.151526	A	1.39302311754497	0	lncRNA	36004-1_{1..2851}	n341424|AK095102|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3894|NULL|-1.1467400|-0.3347568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341424|AK095102|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3894|NULL|-1.1467400|-0.3347568	chr13	102363153	102366003	-	NA	NA	NA	NA	FGF14	NA	chr13:102373205-102376004	inner
CUST_50780_PI429285431	1.4059718	A	1.0373111	A	1.29115365482784	0	lncRNA	54436-1_{1..397}	hg19_lincRNAsTranscripts_TCONS_l2_00004816 range=chr11:123325221-123351603 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004816 range=chr11:123325221-123351603 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	123325221	123325617	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33222_PI429285431	7.1103125	P	7.703715	P	0.662777944780644	0	lncRNA	34811-1_{1..1195}	n339921|BC071801|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2370|NULL|-0.8496450|-0.3232028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339921|BC071801|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2370|NULL|-0.8496450|-0.3232028	chr18	 70992175	 70993369	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33759_PI429285431	3.8277152	P	4.8382325	P	0.496368235511463	0	lncRNA	35313-2_{3001..3130}	n340538|AK055873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3000|NULL|-0.7746360|-0.1473986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340538|AK055873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3000|NULL|-0.7746360|-0.1473986	chr17	 18013647	 18013776	-	NA	NA	NA	NA	MYO15A	NA	chr17:18012020-18023777	inner
CUST_7218_PI429285431	7.326112	P	7.6323056	P	0.808772809191798	0	lncRNA	7696-1_{1..307}	"transcript_id ""ENST00000411055.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411055.1"" | genecode_v17"	chr5	101638208	101638514	+	ENSG00000222987.1	ENST00000411055.1	RN7SKP68	RN7SKP68-201	SLCO4C1	NA	chr5:101628208-101632253	inter
CUST_34632_PI429285431	2.0960321	A	2.90908	P	0.569178116514216	0	lncRNA	36085-1_{1..2353}	n341525|AK023631|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3995|NULL|-1.1675200|-0.4878772	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341525|AK023631|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3995|NULL|-1.1675200|-0.4878772	chr8	 69146909	 69149261	+	NA	NA	NA	NA	PREX2	NA	chr8:69136909-69143897	inter
CUST_51775_PI429285431	6.3288794	P	6.773661	P	0.734695528887258	0	lncRNA	55326-1_{1..373}	hg19_lincRNAsTranscripts_TCONS_l2_00012275 range=chr19:7982546-7983975 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012275 range=chr19:7982546-7983975 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	  7982546	  7982918	+	NA	NA	NA	NA	TIMM44	NA	chr19:7991603-7993975	inner
CUST_49478_PI429285431	0.9930198	A	0.96354187	A	1.02064271751552	0	lncRNA	53272-1_{1..255}	hg19_lincRNAsTranscripts_TCONS_l2_00024561 range=chr6:1502691-1555409 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024561 range=chr6:1502691-1555409 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	  1502691	  1502945	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18851_PI429285431	2.3705063	A	1.0003818	A	2.58492872278909	0	lncRNA	20545-1_{1..845}	lnc-WDR73-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR73-1:1	chr15	 85176755	 85177599	-	lnc-WDR73-1	lnc-WDR73-1:1	ENSG00000254414	RP11-182J1.1	WDR73	"hg19_refFlat_EGLN1:range=chr1:231502157-2315576345'pad=0,hg19_refFlat_EGLN1:range=chr1:231502157-2315576345'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30chr15:85185999-85187218"	NA	inter
CUST_49102_PI429285431	5.2057076	P	5.1534667	P	1.03687422294786	0	lncRNA	52926-1_{1..461}	hg19_lincRNAsTranscripts_TCONS_l2_00020484 range=chr4:37101734-37112616 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020484 range=chr4:37101734-37112616 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 37101734	 37102194	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5497_PI429285431	0.88992214	A	0.8914237	A	0.998959739366181	0	lncRNA	5429-1_{1..1839}	"transcript_id ""ENST00000398669.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000398669.2"" | genecode_v17"	chr16	 32897547	 32899385	+	ENSG00000214614.2	ENST00000398669.2	RP11-989E6.3	RP11-989E6.3-002	NA	NA	NA	inter
CUST_17513_PI429285431	1.5784461	A	1.6131223	A	0.976250846961391	0	lncRNA	19238-1_{1..1400}	lnc-BOD1-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-BOD1-2:10	chr5	173215366	173216765	-	lnc-BOD1-2	lnc-BOD1-2:10	XLOC_005088	linc-BOD1-2	NA	NA	NA	inter
CUST_27187_PI429285431	0.9621916	A	0.9230327	A	1.02751460472224	0	lncRNA	28727-1_{1..600}	n324316|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043019|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043019|-0.8874050|-0.4717934	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324316|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043019|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043019|-0.8874050|-0.4717934	chr6	163927604	163928203	+	NA	NA	NA	NA	QKI	NA	chr6:163917604-163939187	inner
CUST_40136_PI429285431	1.1793342	A	0.91377586	A	1.20210118685448	0	lncRNA	40975-1_{1..3000}	n407731|NR_027249|lncRNA|Homosapiens||RefGeneNoncode|NR_027249||13.5521000|-0.1356071	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407731|NR_027249|lncRNA|Homosapiens||RefGeneNoncode|NR_027249||13.5521000|-0.1356071	chr12	104237526	104240525	-	NA	NA	NA	NA	HSP90B1	NA	chr12:104324189-104333989	inter
CUST_3510_PI429285431	0.8863247	A	0.8946552	A	0.994242376425147	0	lncRNA	3481-1_{1..597}	"transcript_id ""ENST00000446206.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446206.1"" | genecode_v17"	chr9	109377359	109377955	-	ENSG00000237062.1	ENST00000446206.1	RP11-308N19.3	RP11-308N19.3-001	NA	NA	NA	inter
CUST_47821_PI429285431	6.745124	P	7.1929297	P	0.733157112443895	0	lncRNA	51735-1_{1..2430}	"gi|410170899|ref|XR_171119.1| PREDICTED: Homo sapiens cytochrome P450, family 21, subfamily A, polypeptide 1 pseudogene (CYP21A1P), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410170899|ref|XR_171119.1| PREDICTED: Homo sapiens cytochrome P450, family 21, subfamily A, polypeptide 1 pseudogene (CYP21A1P), misc_RNA"	NT_167248.1	  3267246	  3269675	+	1590	XR_171119.2	NA	NA	NA	"hg19_refFlat_TNXB:range=chr6_ssto_hap7:3341834-33457045'pad=0,hg19_refFlat_TNXB:range=chr6_ssto_hap7:3341834-33457045'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_TNXB:range=chr6_ssto_hap7:3309101-33128525'pad=0,hg19_refFlat_TNXB:range=chr6_ssto_hap7:3309101-33128525'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_TNXB:range=chr6_dbb_hap3:3288342-32922135'pad=0,hg19_refFlat_TNXB:range=chr6_dbb_hap3:3288342-32922135'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_TNXB:range=chr6_mcf_hap5:3388967-34458095'pad=0,hg19_refFlat_TNXB:range=chr6_mcf_hap5:3388967-34458095'pad=0 3'pad=0 strand=- repeatMasking=none,-59.70;hg19_refFlat_TNXB:range=chr6_mcf_hap5:3356235-33599865'pad=0,hg19_refFlat_TNXB:range=chr6_mcf_hap5:3356235-33599865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_TNXB:range=chr6_qbl_hap6:3270180-33149215'pad=0,hg19_refFlat_TNXB:range=chr6_qbl_hap6:3270180-33149215'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_TNXB:range=chr6_qbl_hap6:3270180-32740505'pad=0,hg19_refFlat_TNXB:range=chr6_qbl_hap6:3270180-32740505'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_TNXB:range=chr6:32009126-320129965'pad=0,hg19_refFlat_TNXB:range=chr6:32009126-320129965'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_TNXB:range=chr6_dbb_hap3:3288342-33451705'pad=0,hg19_refFlat_TNXB:range=chr6_dbb_hap3:3288342-33451705'pad=0 3'pad=0 strand=- repeatMasking=none,-59.70;hg19_refFlat_TNXB:range=chr6:31976391-319801425'pad=0,hg19_refFlat_TNXB:range=chr6:31976391-319801425'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_TNXB:range=chr6:32009126-320659755'pad=0,hg19_refFlat_TNXB:range=chr6:32009126-320659755'pad=0 3'pad=0 strand=- repeatMasking=none,-59.70;hg19_refFlat_TNXB:range=chr6_cox_hap2:3479777-34836475'pad=0,hg19_refFlat_TNXB:range=chr6_cox_hap2:3479777-34836475'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_TNXB:range=chr6_cox_hap2:3479777-35366375'pad=0,hg19_refFlat_TNXB:range=chr6_cox_hap2:3479777-35366375'pad=0 3'pad=0 strand=- repeatMasking=none,-59.70;hg19_refFlat_TNXB:range=chr6_mcf_hap5:3388967-33928375'pad=0,hg19_refFlat_TNXB:range=chr6_mcf_hap5:3388967-33928375'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_TNXB:range=chr6_dbb_hap3:3261974-32657255'pad=0,hg19_refFlat_TNXB:range=chr6_dbb_hap3:3261974-32657255'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_TNXB:range=chr6_ssto_hap7:3341834-33689315'pad=0,hg19_refFlat_TNXB:range=chr6_ssto_hap7:3341834-33689315'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10"	NA	Unknown
CUST_21085_PI429285431	1.738506	A	0.965319	A	1.70904099079189	0	lncRNA	22710-1_{1..1016}	lnc-SLC9A11-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SLC9A11-1:2	chr1	173411058	173412073	-	lnc-SLC9A11-1	lnc-SLC9A11-1:2	ENSG00000203739.3	RP11-296O14.3	NA	NA	NA	inter
LNCA_21_P0006390	1.9053937	A	0.9237024	A	1.97477912523545	0	lncRNA	TCONS_00016858	NA	NA	NA	NA	XLOC_007832	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007832), lincRNA [TCONS_00016858]"	chr9:117424921-117418869	hs|9q32	Agilent_HUMAN_G3V2	TCONS_00016858	TCONS_00016858	chr9	117418869	117424921	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43640_PI429285431	7.0744057	P	7.2766643	P	0.869188745902344	0	lncRNA	48399-1_{1..3000}	"gi|254553487|ref|NR_028103.1| Homo sapiens DDB1 and CUL4 associated factor 8 (DCAF8), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254553487|ref|NR_028103.1| Homo sapiens DDB1 and CUL4 associated factor 8 (DCAF8), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_028103.1	NA	NA	NA	NA	NA	Unknown
CUST_42187_PI429285431	1.3860357	A	1.6565872	A	0.829002581862825	0	lncRNA	44249-1_{1..126}	ENST00000362218 ncrna:miRNA chromosome:GRCh37:14:101488366:101488491:1 gene:ENSG00000199088 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362218 ncrna:miRNA chromosome:GRCh37:14:101488366:101488491:1 gene:ENSG00000199088 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101488366	101488491	+	ENSG00000199088	ENST00000362218	NA	NA	NA	NA	NA	inter
CUST_2563_PI429285431	0.91179574	A	0.9100795	A	1.00119031478014	0	lncRNA	2551-1_{1..474}	"transcript_id ""ENST00000429444.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429444.1"" | genecode_v17"	chr6	 80130014	 80130487	+	ENSG00000231533.1	ENST00000429444.1	RP1-232L24.3	RP1-232L24.3-001	NA	NA	NA	inter
CUST_29575_PI429285431	1.0468314	A	1.0446585	A	1.0015072743064	0	lncRNA	31335-1_{1..441}	n333076|AF277723|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076010|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076010|1.9717200|-0.2727119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333076|AF277723|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076010|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076010|1.9717200|-0.2727119	chr5	137654894	137655334	-	NA	NA	NA	NA	CDC25C	NA	chr5:137644894-137667516	inner
CUST_19552_PI429285431	4.7532682	P	4.945749	P	0.87509964086641	0	lncRNA	21208-1_{1..377}	lnc-SEC14L1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC14L1-1:10	chr17	 75095100	 75095476	+	lnc-SEC14L1-1	lnc-SEC14L1-1:10	ENSG00000234912.3	LINC00338	SEC14L1	NA	chr17:75085100-75105256	inner
CUST_9946_PI429285431	6.174	P	6.7542486	P	0.668848513901685	0	lncRNA	11469-1_{1..871}	lnc-GMDS-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GMDS-3:2	chr6	  1324988	  1325858	-	lnc-GMDS-3	lnc-GMDS-3:2	XLOC_005575	linc-HUS1B-1	FOXQ1	NA	chr6:1314988-1314993	inter
LNCA_33_P3312990	0.91720414	A	0.9244135	A	0.995015317412473	0	lncRNA	XR_110213	XR_110213	XR_110213	   441167	Hs.129280	LOC441167	hCG1820801	NA	NA	NA	"PREDICTED: Homo sapiens hCG1820801 (LOC441167), miscRNA [XR_110213]"	chr6:114560266-114560325	hs|6q21	Agilent_HUMAN_G3V2	XR_110213	XR_110213	chr6	114560266	114560325	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35593_PI429285431	8.233506	P	7.2723594	P	1.94685656882907	0	lncRNA	37008-1_{1..352}	n342730|AL049336|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5233|NULL|-1.2611100|-0.5765679	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342730|AL049336|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5233|NULL|-1.2611100|-0.5765679	chr6	 26527290	 26527641	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30188_PI429285431	0.92193	A	0.9120177	A	1.00689434008846	0	lncRNA	31962-1_{1..215}	n334889|AJ459835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248092_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248092_10|-1.0803500|-0.4221575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334889|AJ459835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248092_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248092_10|-1.0803500|-0.4221575	chr6	   729415	   729629	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10978_PI429285431	0.9164114	A	1.0251637	A	0.927389758685949	0	lncRNA	12522-1_{1..520}	lnc-ZNF674-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF674-1:1	chrX	 46186986	 46187505	-	lnc-ZNF674-1	lnc-ZNF674-1:1	XLOC_008151	linc-CXorf36-3	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20"	NA	inter
CUST_30311_PI429285431	3.1119237	A	2.4045076	A	1.63287697638921	0	lncRNA	32087-1_{1..204}	n335218|AY539965|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255260|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255260|-0.1102390|-0.1233867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335218|AY539965|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255260|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255260|-0.1102390|-0.1233867	chrX	 10474458	 10474661	-	NA	NA	NA	NA	MID1	NA	chrX:10464458-10543112	inner
CUST_49584_PI429285431	1.1982388	A	0.8981212	A	1.23124477307443	0	lncRNA	53373-2_{3001..4329}	hg19_lincRNAsTranscripts_TCONS_l2_00024456 range=chr6:143268774-143279584 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024456 range=chr6:143268774-143279584 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	143271774	143273102	+	NA	NA	NA	NA	HIVEP2	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-27.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50chr6:143258774-143266338"	NA	inter
CUST_25517_PI429285431	1.4711083	A	1.5759082	A	0.92993391434112	0	lncRNA	27048-1_{1..329}	lnc-PDSS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDSS2-1:1	chr6	107832660	107832988	-	lnc-PDSS2-1	lnc-PDSS2-1:1	ENSG00000234206.1	RP1-67A8.3	SOBP	NA	chr6:107822660-107842925	inner
CUST_25231_PI429285431	3.2275097	A	2.093817	A	2.19419645247547	0	lncRNA	26762-1_{1..594}	lnc-LPIN3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LPIN3-2:1	chr20	 40692147	 40692740	+	lnc-LPIN3-2	lnc-LPIN3-2:1	ENSG00000225458.1	RP5-1121H13.4	PTPRT	NA	chr20:40701392-40702609	inter
CUST_39493_PI429285431	1.7685306	A	1.7551	A	1.0093528496039	0	lncRNA	40440-1_{1..391}	n387209|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011adm.1||-1.1052300|-0.1968691	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387209|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011adm.1||-1.1052300|-0.1968691	chr21	 33452628	 33453018	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44755_PI429285431	1.8464432	A	2.6994758	A	0.55361978217709	0	lncRNA	49301-1_{1..784}	"gi|310119770|ref|XR_108647.1| PREDICTED: Homo sapiens uncharacterized LOC100505711 (LOC100505711), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119770|ref|XR_108647.1| PREDICTED: Homo sapiens uncharacterized LOC100505711 (LOC100505711), misc_RNA"	Chr6	 41349130	 41349913	-	100505711	XR_108647.2	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50"	NA	inter
CUST_33108_PI429285431	9.660779	P	10.711561	P	0.482706446806882	0	lncRNA	34709-2_{3001..3824}	n339798|BC040538|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2245|NULL|-1.1191000|-0.3271587	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339798|BC040538|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2245|NULL|-1.1191000|-0.3271587	chr18	 13330064	 13330887	+	NA	NA	NA	NA	C18orf1	NA	chr18:13317064-13339979	inner
CUST_9807_PI429285431	1.0924788	A	0.9009007	A	1.14201222933032	0	lncRNA	11323-1_{1..737}	lnc-SEL1L3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEL1L3-2:1	chr4	 25556494	 25557230	-	lnc-SEL1L3-2	lnc-SEL1L3-2:1	XLOC_003910	linc-SEPSECS-2	NA	NA	NA	inter
LNCA_21_P0009216	7.007867	P	7.278523	P	0.828942536163683	0	lncRNA	TCONS_00025294	NA	NA	NA	NA	XLOC_012099	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012099), lincRNA [TCONS_00025294]"	chr17:8086455-8086514	hs|17p13.1	Agilent_HUMAN_G3V2	TCONS_00025294	TCONS_00025294	chr17	  8086455	  8086514	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013187	0.9075195	A	1.5674781	A	0.632896458506941	0	lncRNA	ENST00000457000	XR_108753	XR_108753	NA	Hs.114761	XLOC_l2_013315	NA	ENST00000457000	THC2606581	NA	"BROAD Institute lincRNA (XLOC_l2_013315), lincRNA [TCONS_l2_00025736]"	chr7:26591685-26591744	hs|7p15.2	Agilent_HUMAN_G3V2	ENST00000457000	ENST00000457000	chr7	 26591685	 26591744	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004078	0.9060933	A	1.9946499	A	0.470231600714724	0	lncRNA	ENST00000507398	NA	NA	NA	NA	XLOC_004652	NA	ENST00000507398	NA	NA	"BROAD Institute lincRNA (XLOC_004652), lincRNA [TCONS_00009547]"	chr5:174413349-174413408	hs|5q35.2	Agilent_HUMAN_G3V2	ENST00000507398	ENST00000507398	chr5	174413349	174413408	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48559_PI429285431	1.2203411	A	0.9085146	A	1.24127820514692	0	lncRNA	52407-1_{1..261}	hg19_lincRNAsTranscripts_TCONS_l2_00015044 range=chr2:196434359-196478715 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015044 range=chr2:196434359-196478715 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	196434359	196434619	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16167_PI429285431	8.637613	P	8.589107	P	1.03419339785401	0	lncRNA	17873-1_{1..2730}	lnc-ZNF793-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF793-1:1	chr19	 38040621	 38043350	+	lnc-ZNF793-1	lnc-ZNF793-1:1	XLOC_013064	linc-ZNF540	ZNF793	NA	chr19:38030621-38034239	inner
CUST_23047_PI429285431	0.90051806	A	0.902437	A	0.998670776350712	0	lncRNA	24618-1_{1..1038}	lnc-TBL1XR1-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBL1XR1-9:1	chr3	174988846	174989883	-	lnc-TBL1XR1-9	lnc-TBL1XR1-9:1	ENSG00000226779.1	NAALADL2-AS2	NAALADL2	NA	chr3:174978846-174998885	inner
CUST_13792_PI429285431	1.0662255	A	1.3098047	A	0.844647215100928	0	lncRNA	15434-1_{1..1049}	lnc-C16orf95-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C16orf95-1:4	chr16	 87325290	 87326338	-	lnc-C16orf95-1	lnc-C16orf95-1:4	XLOC_012053	linc-MTHFSD-2	NA	NA	NA	inter
CUST_14767_PI429285431	3.6044521	P	3.729713	P	0.916838225262217	0	lncRNA	16428-1_{1..1164}	lnc-DYM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DYM-1:1	chr18	 46547774	 46548937	-	lnc-DYM-1	lnc-DYM-1:1	XLOC_012841	linc-SMAD7	LOC100652797	NA	chr18:46544043-46546141	inter
CUST_9540_PI429285431	4.7179365	P	4.7699113	P	0.964615033665795	0	lncRNA	11052-1_{1..770}	lnc-VSX1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VSX1-1:6	chr20	 25129235	 25130004	-	lnc-VSX1-1	lnc-VSX1-1:6	XLOC_013704	linc-VSX1-2	NA	NA	NA	inter
CUST_19649_PI429285431	0.88615173	A	0.8854085	A	1.00051530050072	0	lncRNA	21305-1_{1..329}	lnc-IFT140-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IFT140-1:1	chr16	  1675957	  1676285	-	lnc-IFT140-1	lnc-IFT140-1:1	ENSG00000226890.1	LA16c-395F10.1	CRAMP1L	"hg19_refFlat_CRAMP1L:range=chr16:1664641-17240465'pad=0,hg19_refFlat_CRAMP1L:range=chr16:1664641-17240465'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.80chr16:1665957-1686161"	NA	inner
CUST_8321_PI429285431	1.5263603	A	0.9147943	A	1.5279168147081	0	lncRNA	9906-1_{1..3000}	lnc-IL1R2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL1R2-2:1	chr2	102600154	102603153	+	lnc-IL1R2-2	lnc-IL1R2-2:1	ENSG00000250054	AC005035.2	IL1R2	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90chr2:102608306-102613629"	NA	inter
CUST_9386_PI429285431	5.429013	P	5.6956186	P	0.831273081681249	0	lncRNA	10890-1_{1..1995}	lnc-GABRA5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GABRA5-2:1	chr15	 26734659	 26736653	+	lnc-GABRA5-2	lnc-GABRA5-2:1	XLOC_011190	linc-GABRA5-1	NA	NA	NA	inter
LNCA_21_P0006318	6.6593256	P	6.8365417	P	0.884407950733383	0	lncRNA	TCONS_00016476	NA	NA	NA	NA	XLOC_007848	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007848), lincRNA [TCONS_00016476]"	chr9:126101257-126101198	hs|9q33.3	Agilent_HUMAN_G3V2	TCONS_00016476	TCONS_00016476	chr9	126101198	126101257	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10968_PI429285431	1.5493506	A	0.9002032	A	1.56824112699693	0	lncRNA	12510-1_{1..720}	lnc-TBC1D19-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBC1D19-3:1	chr4	 26790144	 26790863	+	lnc-TBC1D19-3	lnc-TBC1D19-3:1	XLOC_003482	linc-STIM2-2	NA	NA	NA	inter
CUST_25713_PI429285431	0.90166765	A	0.89644396	A	1.00362734895987	0	lncRNA	27241-1_{1..303}	lnc-ISCU-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ISCU-1:2	chr12	109034650	109034952	+	lnc-ISCU-1	lnc-ISCU-1:2	ENSG00000257221.1	RP11-689B22.2	CORO1C	NA	chr12:109038885-109044693	inter
CUST_7033_PI429285431	1.0995759	A	1.3895388	A	0.817923091801591	0	lncRNA	6978-1_{1..594}	"transcript_id ""ENST00000436019.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436019.1"" | genecode_v17"	chrX	 27177022	 27177615	-	ENSG00000242021.1	ENST00000436019.1	RP11-268G12.3	RP11-268G12.3-001	NA	NA	NA	inter
CUST_35850_PI429285431	1.0410693	A	1.5628796	A	0.696497316759909	0	lncRNA	37247-2_{3001..3770}	n344518|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_66|NULL|-1.5737000|-0.2940961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344518|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_66|NULL|-1.5737000|-0.2940961	chr1	177978566	177979335	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36241_PI429285431	1.3342286	A	0.9086258	A	1.34313358587849	0	lncRNA	37488-1_{1..3000}	n344780|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_329|NULL|-1.3209200|-0.3677044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344780|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_329|NULL|-1.3209200|-0.3677044	chr8	 72587444	 72590443	+	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60"	NA	inter
CUST_130_PI429201921	11.105322	P	11.414413	P	0.807150160777955	0	lncRNA	120-2_{3001..3531}	TC16001511.hg.1	 TCONS_l2_00009690-XLOC_l2_005188 // Broad TUCP // linc-TP53TG3B-18 chr16:+:32883268-32884672 // chr16 // 100 // 100 // 0 // --- // 0///TCONS_l2_00009689-XLOC_l2_005188 // Broad TUCP // linc-TP53TG3B-18 chr16:+:32881354-32884886 // chr16 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr16:+:32881354-32884886	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00009689-XLOC_l2_005188	linc-TP53TG3B-18	chr16	 32881354	 32884886	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5757_PI429285431	3.6642385	P	4.6009865	P	0.52240912427877	0	lncRNA	5682-1_{1..1486}	"transcript_id ""ENST00000572818.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000572818.2"" | genecode_v17"	chr17	 19064102	 19065587	+	ENSG00000262292.2	ENST00000572818.2	RP11-160E2.11	RP11-160E2.11-001	GRAPL	NA	chr17:19054102-19062148	inter
LNCA_21_P0006218	0.8982043	A	0.89240843	A	1.00402547148167	0	lncRNA	TCONS_00016142	NA	NA	NA	NA	XLOC_007538	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007538), lincRNA [TCONS_00016142]"	chr9:120639127-120639186	hs|9q33.1	Agilent_HUMAN_G3V2	TCONS_00016142	TCONS_00016142	chr9	120639127	120639186	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24192_PI429285431	0.89246964	A	0.8901526	A	1.00160734013185	0	lncRNA	25743-1_{1..75}	lnc-AK3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AK3-1:1	chr9	  4850299	  4850373	-	lnc-AK3-1	lnc-AK3-1:1	ENSG00000228165.1	RP11-125K10.5	RCL1	NA	chr9:4840299-4860373	inner
CUST_5959_PI429285431	2.4178908	A	3.2865815	P	0.547643632361911	0	lncRNA	5888-1_{1..546}	"transcript_id ""ENST00000472655.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000472655.2"" | genecode_v17"	chr17	 70026795	 70027340	+	ENSG00000256124.1	ENST00000472655.2	RP11-84E24.3	RP11-84E24.3-003	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20"	NA	inter
CUST_22785_PI429285431	5.858756	P	6.4612713	P	0.658604694254513	0	lncRNA	24365-1_{1..634}	lnc-SLC25A48-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A48-3:2	chr5	134970459	134971092	+	lnc-SLC25A48-3	lnc-SLC25A48-3:2	ENSG00000250167.1	CTC-321K16.1	NA	NA	NA	inter
LNCA_21_P0008814	1.5015872	A	0.8928737	A	1.52489879861555	0	lncRNA	TCONS_00023876	NA	NA	NA	NA	XLOC_011181	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011181), lincRNA [TCONS_00023876]"	chr15:24791447-24791506	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023876	TCONS_00023876	chr15	 24791447	 24791506	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001744	0.89929456	A	1.992952	A	0.46857197006453	0	lncRNA	TCONS_00002495	NA	NA	NA	NA	XLOC_001048	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001048), lincRNA [TCONS_00002495]"	chr1:156682485-156682426	hs|1q23.1	Agilent_HUMAN_G3V2	TCONS_00002495	TCONS_00002495	chr1	156682426	156682485	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009057	8.560854	P	8.719224	P	0.896036868490157	0	lncRNA	TCONS_00024725	NA	NA	NA	NA	XLOC_012005	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012005), lincRNA [TCONS_00024725]"	chr16:73093059-73092898	hs|16q22.3	Agilent_HUMAN_G3V2	TCONS_00024725	TCONS_00024725	chr16	 73092898	 73093059	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29041_PI429285431	0.894805	A	0.9681748	A	0.950415453977024	0	lncRNA	30770-1_{1..808}	n326531|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027725|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027725|-1.4387400|-0.4073959	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326531|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027725|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027725|-1.4387400|-0.4073959	chr1	 91069669	 91070476	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48234_PI429285431	1.4222765	A	2.1345115	A	0.610373824696114	0	lncRNA	52096-1_{1..950}	hg19_lincRNAsTranscripts_TCONS_l2_00001624 range=chr1:173392458-173411063 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001624 range=chr1:173392458-173411063 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	173392458	173393407	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32766_PI429285431	1.601097	A	0.89505064	A	1.63132740740544	0	lncRNA	34402-2_{3001..3171}	n339403|BC040985|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1835|NULL|-1.2086100|-0.3711623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339403|BC040985|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1835|NULL|-1.2086100|-0.3711623	chr3	 86122659	 86122829	+	NA	NA	NA	NA	CADM2	NA	chr3:86109659-86123579	inner
CUST_1205_PI429285431	4.289562	P	4.764674	P	0.719410938179172	0	lncRNA	1196-1_{1..504}	"transcript_id ""ENST00000440609.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440609.1"" | genecode_v17"	chr2	199417919	199418422	-	ENSG00000225421.1	ENST00000440609.1	AC019330.1	AC019330.1-001	NA	NA	NA	inter
CUST_6324_PI429285431	1.673938	A	1.9422449	A	0.83029337959146	0	lncRNA	6247-1_{1..510}	"transcript_id ""ENST00000358469.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000358469.4"" | genecode_v17"	chr19	  7019311	  7019820	-	ENSG00000196589.4	ENST00000358469.4	CTB-25J19.1	CTB-25J19.1-001	MBD3L5	NA	chr19:7030594-7031442	inter
LNCA_21_P0011170	1.8792742	A	1.7012134	A	1.13136214123032	0	lncRNA	TCONS_l2_00007049	NA	NA	NA	NA	XLOC_l2_003885	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003885), lincRNA [TCONS_l2_00007049]"	chr13:19526887-19526705	hs|13q12.11	Agilent_HUMAN_G3V2	TCONS_l2_00007049	TCONS_l2_00007049	chr13	 19526705	 19526887	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27834_PI429285431	2.9936864	A	3.0264368	A	0.977554878097552	0	lncRNA	29422-1_{1..414}	n325064|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078014|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078014|-1.0199200|-0.3368796	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325064|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078014|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078014|-1.0199200|-0.3368796	chr20	 11194763	 11195176	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26730_PI429285431	6.297394	P	6.73013	P	0.740855456380791	0	lncRNA	28226-2_{3001..6000}	n5181|U56440|His-1RNA|Homosapiens|His-1|NONCODEv2.0|n5181|NULL|-1.5906100|-0.3761680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n5181|U56440|His-1RNA|Homosapiens|His-1|NONCODEv2.0|n5181|NULL|-1.5906100|-0.3761680	chr2	145459943	145462942	+	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.60"	NA	inter
CUST_49705_PI429285431	1.295177	A	1.0388179	A	1.19446046221719	0	lncRNA	53482-1_{1..383}	hg19_lincRNAsTranscripts_TCONS_l2_00025704 range=chr7:20336279-20340307 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025704 range=chr7:20336279-20340307 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 20336279	 20336661	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4445_PI429285431	0.8961207	A	1.2936612	A	0.759151378557337	0	lncRNA	4395-1_{1..1014}	"transcript_id ""ENST00000535643.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535643.1"" | genecode_v17"	chr12	122237078	122238091	-	ENSG00000212694.4	ENST00000535643.1	AC084018.1	AC084018.1-003	SETD1B	NA	chr12:122242638-122250852	inter
CUST_39631_PI429285431	0.8954576	A	0.8883319	A	1.00495137661652	0	lncRNA	40570-1_{1..354}	n405207|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000041907||-1.2471400|-0.6088111	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405207|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000041907||-1.2471400|-0.6088111	chr6	114423825	114424178	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11692_PI429285431	7.517645	P	7.2104445	P	1.23730442237028	0	lncRNA	13270-1_{1..1046}	lnc-STIL-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STIL-1:3	chr1	 47851920	 47852965	-	lnc-STIL-1	lnc-STIL-1:3	XLOC_000822	linc-STIL-2	CMPK1	NA	chr1:47841920-47844511	inter
CUST_48918_PI429285431	2.115986	A	1.959387	A	1.1146563546813	0	lncRNA	52760-1_{1..2385}	hg19_lincRNAsTranscripts_TCONS_l2_00018854 range=chr3:129835549-129840161 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018854 range=chr3:129835549-129840161 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	129835549	129837933	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30"	NA	inter
LNCA_21_P0007561	3.3312044	P	3.9573796	P	0.647891798356864	0	lncRNA	TCONS_00020434	NA	NA	NA	NA	XLOC_009764	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009764), lincRNA [TCONS_00020434]"	chr12:54155793-54155852	hs|12q13.13	Agilent_HUMAN_G3V2	TCONS_00020434	TCONS_00020434	chr12	 54155793	 54155852	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48626_PI429285431	10.446077	P	10.494165	P	0.967217330505592	0	lncRNA	52473-1_{1..535}	hg19_lincRNAsTranscripts_TCONS_l2_00013753 range=chr2:88272043-88272711 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013753 range=chr2:88272043-88272711 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 88272043	 88272577	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_9748_PI429285431	0.9131497	A	0.91304314	A	1.00007386449141	0	lncRNA	11265-1_{1..454}	lnc-HS3ST5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HS3ST5-2:1	chr6	114866408	114866861	-	lnc-HS3ST5-2	lnc-HS3ST5-2:1	XLOC_005813	linc-HS3ST5-4	NA	NA	NA	inter
CUST_10076_PI429285431	1.4802554	A	3.185277	P	0.306716652123769	0	lncRNA	11602-1_{1..1459}	lnc-TGFBRAP1-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGFBRAP1-9:1	chr2	105136495	105137953	-	lnc-TGFBRAP1-9	lnc-TGFBRAP1-9:1	XLOC_002238	linc-MFSD9-10	NA	NA	NA	inter
CUST_8815_PI429285431	4.0142035	P	4.273427	P	0.835537508765308	0	lncRNA	10354-1_{1..2547}	lnc-CD38-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CD38-2:1	chr4	 16257880	 16260426	+	lnc-CD38-2	lnc-CD38-2:1	ENSG00000225917	AC006427.1	NA	"hg19_refFlat_RPS21:range=chr20:60962395-609635225'pad=0,hg19_refFlat_RPS21:range=chr20:60962395-609635225'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0,hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.30"	NA	inter
CUST_45366_PI429285431	0.97328913	A	1.0213468	A	0.967237664678213	0	lncRNA	49802-2_{3001..4878}	"gi|223633942|ref|NR_026851.1| Homo sapiens SPATA31 subfamily D, member 5, pseudogene (SPATA31D5P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223633942|ref|NR_026851.1| Homo sapiens SPATA31 subfamily D, member 5, pseudogene (SPATA31D5P), non-coding RNA"	Chr9	 84531352	 84533229	+	347127	NR_026851.1	NA	NA	NA	NA	NA	inter
CUST_42047_PI429285431	6.7899566	P	6.91973	P	0.913974994404629	0	lncRNA	43946-1_{1..76}	ENST00000584315 ncrna:miRNA chromosome:GRCh37:1:61549127:61549202:-1 gene:ENSG00000263380 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584315 ncrna:miRNA chromosome:GRCh37:1:61549127:61549202:-1 gene:ENSG00000263380 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 61549127	 61549202	-	ENSG00000263380	ENST00000584315	NA	NA	NFIA	NA	chr1:61542946-61559202	inner
CUST_52167_PI429285431	0.8882424	A	1.3160931	A	0.74336841710884	0	lncRNA	55687-1_{1..586}	hg19_lincRNAsTranscripts_TCONS_l2_00018193 range=chr22:23800566-23803020 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018193 range=chr22:23800566-23803020 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 23800566	 23801151	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38884_PI429285431	3.8717592	P	4.329207	P	0.728273472108244	0	lncRNA	39871-1_{1..341}	n384819|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003mym.1||-0.8671070|-0.3208141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384819|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003mym.1||-0.8671070|-0.3208141	chr6	  9842748	  9843088	-	NA	NA	NA	NA	OFCC1	NA	chr6:9832748-9874348	inter
LNCA_21_P0013366	4.4399104	P	4.8042183	P	0.776841457573964	0	lncRNA	ENST00000430530	NA	NA	NA	NA	XLOC_l2_013267	NA	ENST00000430530	THC2659542	NA	"BROAD Institute lincRNA (XLOC_l2_013267), lincRNA [TCONS_l2_00027037]"	chr7:5878724-5878783	hs|7p22.1	Agilent_HUMAN_G3V2	ENST00000430530	ENST00000430530	chr7	  5878724	  5878783	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5896_PI429285431	0.95686007	A	1.1349418	A	0.883877457175027	0	lncRNA	5827-1_{1..1723}	"transcript_id ""ENST00000514726.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514726.1"" | genecode_v17"	chr17	 49389970	 49391692	-	ENSG00000249383.1	ENST00000514726.1	RP11-1018N14.1	RP11-1018N14.1-001	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.84;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80"	NA	inter
CUST_1610_PI429285431	0.99843323	A	0.9177476	A	1.05752049984456	0	lncRNA	1596-1_{1..490}	"transcript_id ""ENST00000452657.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452657.1"" | genecode_v17"	chr3	191747669	191748158	+	ENSG00000232353.1	ENST00000452657.1	RP11-655G22.1	RP11-655G22.1-001	NA	NA	NA	inter
CUST_41143_PI429285431	2.9303546	A	3.114691	P	0.88005378334976	0	lncRNA	41941-1_{1..149}	ENST00000408378 ncrna:miRNA chromosome:GRCh37:8:7946463:7946611:-1 gene:ENSG00000221305 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408378 ncrna:miRNA chromosome:GRCh37:8:7946463:7946611:-1 gene:ENSG00000221305 gene_biotype:miRNA transcript_biotype:miRNA	chr8	  7946463	  7946611	-	ENSG00000221305	ENST00000408378	NA	NA	NA	NA	NA	inter
CUST_46192_PI429285431	4.8300614	P	4.969354	P	0.907964250399307	0	lncRNA	50438-1_{1..777}	"gi|347582637|ref|NR_045180.1| Homo sapiens SPG20 opposite strand (SPG20OS), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|347582637|ref|NR_045180.1| Homo sapiens SPG20 opposite strand (SPG20OS), transcript variant 1, non-coding RNA"	Chr13	 36920568	 36921344	+	100507135	NR_045180.1	NA	NA	NA	NA	NA	inter
CUST_257_PI429285431	5.4194713	P	5.4357076	P	0.988808945428285	0	lncRNA	249-1_{1..427}	"transcript_id ""ENST00000605725.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605725.1"" | genecode_v17"	chr1	 62207670	 62208096	-	ENSG00000271200.1	ENST00000605725.1	RP11-430G17.3	RP11-430G17.3-001	INADL	NA	chr1:62208149-62218096	inter
CUST_35272_PI429285431	1.2523077	A	0.90509677	A	1.27209898105984	0	lncRNA	36672-2_{3001..3220}	n342281|BX648062|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4773|NULL|-1.1191500|-0.3849293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342281|BX648062|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4773|NULL|-1.1191500|-0.3849293	chr1	 93850978	 93851197	+	NA	NA	NA	NA	FNBP1L	"hg19_refFlat_FBXW11:range=chr5:171295639-1714335065'pad=0,hg19_refFlat_FBXW11:range=chr5:171295639-1714335065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70chr1:93850044-93861186"	NA	inter
CUST_46129_PI429285431	7.5641246	P	8.102411	P	0.688588312893488	0	lncRNA	50385-2_{3001..3655}	"gi|336176118|ref|NR_038440.1| Homo sapiens TBX5 antisense RNA 1 (TBX5-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336176118|ref|NR_038440.1| Homo sapiens TBX5 antisense RNA 1 (TBX5-AS1), non-coding RNA"	Chr12	114849000	114849654	+	255480	NR_038440.1	NA	NA	NA	NA	NA	inter
CUST_25419_PI429285431	4.5300117	P	4.9880853	P	0.727957636332995	0	lncRNA	26949-1_{1..515}	lnc-NYX-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NYX-1:1	chrX	 41381406	 41381920	+	lnc-NYX-1	lnc-NYX-1:1	ENSG00000233033.1	CASK-AS1	CASK	NA	chrX:41374187-41391589	inner
LNCA_21_P0010410	3.2260685	P	3.3390384	P	0.924682570240052	0	lncRNA	ENST00000416995	NA	NA	NA	NA	XLOC_014212	NA	ENST00000416995	NA	NA	"BROAD Institute lincRNA (XLOC_014212), lincRNA [TCONS_00029581]"	chr22:32366884-32369417	hs|22q12.3	Agilent_HUMAN_G3V2	ENST00000416995	ENST00000416995	chr22	 32366884	 32369417	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25031_PI429285431	3.4021506	P	3.0525613	P	1.27419784271583	0	lncRNA	26570-1_{1..491}	lnc-EYA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EYA3-1:1	chr1	 28286671	 28287161	-	lnc-EYA3-1	lnc-EYA3-1:1	ENSG00000227050.1	RP11-460I13.2	SMPDL3B	"hg19_refFlat_SMPDL3B:range=chr1:28261695-282827105'pad=0,hg19_refFlat_SMPDL3B:range=chr1:28261695-282827105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_SMPDL3B:range=chr1:28261695-282853495'pad=0,hg19_refFlat_SMPDL3B:range=chr1:28261695-282853495'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00chr1:28276671-28285663"	NA	inner
CUST_42234_PI429285431	1.3744819	A	1.0345831	A	1.26566780869613	0	lncRNA	44361-1_{1..84}	ENST00000581338 ncrna:miRNA chromosome:GRCh37:2:54076259:54076342:-1 gene:ENSG00000265452 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581338 ncrna:miRNA chromosome:GRCh37:2:54076259:54076342:-1 gene:ENSG00000265452 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 54076259	 54076342	-	ENSG00000265452	ENST00000581338	NA	NA	GPR75-ASB3	NA	chr2:54066259-54086342	inner
LNCA_21_P0013358	0.94355774	A	2.0660203	A	0.459309153436031	0	lncRNA	TCONS_l2_00026979	NA	NA	NA	NA	XLOC_l2_014057	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014057), lincRNA [TCONS_l2_00026979]"	chr7:150887389-150887330	hs|7q36.1	Agilent_HUMAN_G3V2	TCONS_l2_00026979	TCONS_l2_00026979	chr7	150887330	150887389	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27828_PI429285431	5.4502006	P	5.607725	P	0.896562212272569	0	lncRNA	29414-1_{1..400}	n325056|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078146|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078146|-0.8863170|-0.1198153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325056|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078146|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078146|-0.8863170|-0.1198153	chr20	 17988136	 17988535	+	NA	NA	NA	NA	OVOL2	NA	chr20:18004796-18009652	inter
CUST_7616_PI429285431	4.894501	P	4.977322	P	0.944209563122057	0	lncRNA	9250-1_{1..3000}	lnc-KIAA0020-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA0020-1:2	chr9	  2621229	  2624228	-	lnc-KIAA0020-1	lnc-KIAA0020-1:2	ENSG00000236404	RP11-125B21.2	VLDLR	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70chr9:2621793-2631413"	NA	inter
CUST_5450_PI429285431	0.89244866	A	0.89253986	A	0.999936786975161	0	lncRNA	5384-1_{1..799}	"transcript_id ""ENST00000562852.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562852.1"" | genecode_v17"	chr16	 20592210	 20593008	+	ENSG00000260201.1	ENST00000562852.1	RP11-143N13.2	RP11-143N13.2-001	ACSM2B	NA	chr16:20582210-20587695	inter
LNCA_21_P0011010	6.7297626	P	6.096277	P	1.55130848327184	0	lncRNA	TCONS_l2_00005011	NA	NA	NA	NA	XLOC_l2_002651	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002651), lincRNA [TCONS_l2_00005011]"	chr11:50252675-50246896	hs|11p11.12	Agilent_HUMAN_G3V2	TCONS_l2_00005011	TCONS_l2_00005011	chr11	 50246896	 50252675	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28203_PI429285431	2.008048	A	3.1838417	P	0.442640173655292	0	lncRNA	29832-1_{1..368}	n325486|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322465|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322465|-0.8996270|-0.1114768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325486|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322465|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322465|-0.8996270|-0.1114768	chr2	  2712686	  2713053	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3144_PI429285431	1.3222227	A	0.9287603	A	1.31354206297973	0	lncRNA	3123-1_{1..357}	"transcript_id ""ENST00000519766.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519766.1"" | genecode_v17"	chr8	 62747515	 62747871	+	ENSG00000254119.1	ENST00000519766.1	RP11-705O24.1	RP11-705O24.1-008	NA	NA	NA	inter
CUST_18687_PI429285431	7.7578144	P	7.910696	P	0.899452125919101	0	lncRNA	20386-2_{3001..3076}	lnc-SPATA21-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPATA21-2:1	chr1	 16942833	 16942908	-	lnc-SPATA21-2	lnc-SPATA21-2:1	ENSG00000219481	NBPF1	NBPF1	NA	chr1:16929833-16939982	inner
CUST_51678_PI429285431	3.2080092	A	3.803477	P	0.661829819268893	0	lncRNA	55240-1_{1..521}	hg19_lincRNAsTranscripts_TCONS_l2_00010949 range=chr17:67957810-67978547 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010949 range=chr17:67957810-67978547 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 67957810	 67958330	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6311_PI429285431	0.9007628	A	0.90461457	A	0.997333717346847	0	lncRNA	6235-1_{1..450}	"transcript_id ""ENST00000592663.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592663.1"" | genecode_v17"	chr19	  4769293	  4769742	+	ENSG00000176840.7	ENST00000592663.1	MIR7-3HG	MIR7-3HG-010	NA	NA	NA	inter
CUST_5888_PI429285431	7.1364684	P	7.1947646	P	0.960397664279001	0	lncRNA	5819-1_{1..586}	"transcript_id ""ENST00000511867.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000511867.1"" | genecode_v17"	chr17	 48074253	 48074838	+	ENSG00000248172.1	ENST00000511867.1	RP11-1094H24.3	RP11-1094H24.3-001	DLX3	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50chr17:48067369-48072588"	NA	inter
CUST_46400_PI429285431	1.011575	A	0.90633684	A	1.07567194765394	0	lncRNA	50615-3_{6001..9000}	"gi|381140055|ref|NR_046473.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 16, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|381140055|ref|NR_046473.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 16, non-coding RNA"	Chr14	101298445	101301444	+	55384	NR_046473.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70"	NA	inter
CUST_27270_PI429285431	0.8924252	A	0.8959568	A	0.997555075126545	0	lncRNA	28825-1_{1..507}	n324418|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041893|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041893|-1.0796000|-0.2848925	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324418|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041893|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041893|-1.0796000|-0.2848925	chr6	113784897	113785403	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46652_PI429285431	0.9037889	A	0.9076037	A	0.997359275000347	0	lncRNA	50825-1_{1..1032}	"gi|397139900|ref|XR_109306.2| PREDICTED: Homo sapiens uncharacterized LOC388282 (LOC388282), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139900|ref|XR_109306.2| PREDICTED: Homo sapiens uncharacterized LOC388282 (LOC388282), misc_RNA"	NA	NA	NA	NA	NA	XR_109306.2	NA	NA	NA	NA	NA	Unknown
CUST_25384_PI429285431	2.5944176	A	2.5825307	A	1.00827340825669	0	lncRNA	26915-1_{1..558}	lnc-EDAR-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EDAR-4:1	chr2	109150285	109150842	-	lnc-EDAR-4	lnc-EDAR-4:1	ENSG00000214184.3	AC012487.2	LIMS1	"hg19_refFlat_GCC2:range=chr2:109065731-1091240865'pad=0,hg19_refFlat_GCC2:range=chr2:109065731-1091240865'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chr2:109150811-109160652"	NA	inter
CUST_26535_PI429285431	0.91641873	A	0.9218985	A	0.996208917242621	0	lncRNA	28042-1_{1..499}	lnc-NEBL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NEBL-1:1	chr10	 20380663	 20381161	-	lnc-NEBL-1	lnc-NEBL-1:1	ENSG00000238246.1	RP11-575A19.2	PLXDC2	NA	chr10:20370663-20390713	inner
CUST_15983_PI429285431	3.1446426	A	3.1059904	A	1.02715378679683	0	lncRNA	17682-1_{1..549}	lnc-ZFAT-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFAT-5:3	chr8	137251072	137251620	-	lnc-ZFAT-5	lnc-ZFAT-5:3	XLOC_007235	linc-ZFAT-4	NA	NA	NA	inter
CUST_49845_PI429285431	5.2391744	P	5.630645	P	0.762352110570505	0	lncRNA	53602-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00026657 range=chr7:65982683-66057999 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026657 range=chr7:65982683-66057999 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 65985683	 65988682	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-59.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_GTF2IRD1:range=chr7:73922411-740167605'pad=0,hg19_refFlat_GTF2IRD1:range=chr7:73922411-740167605'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.01;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.90;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_828_PI429285431	8.617175	P	11.139917	P	0.174011915090556	0	lncRNA	821-1_{1..860}	"transcript_id ""ENST00000587085.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587085.1"" | genecode_v17"	chr2	 34960145	 34961004	+	ENSG00000228262.3	ENST00000587085.1	AC073218.2	AC073218.2-003	NA	NA	NA	inter
CUST_15912_PI429285431	3.0613575	A	3.4965098	P	0.739615672001591	0	lncRNA	17607-1_{1..367}	lnc-C1orf133-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf133-1:1	chr1	210466289	210466655	-	lnc-C1orf133-1	lnc-C1orf133-1:1	XLOC_001188	linc-IRF6	NA	NA	NA	inter
CUST_38483_PI429285431	9.250616	P	8.805398	P	1.36151983488882	0	lncRNA	39501-1_{1..544}	n382989|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002efy.2||-1.1600400|-0.4287831	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382989|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002efy.2||-1.1600400|-0.4287831	chr16	 50139751	 50140294	+	NA	NA	NA	NA	HEATR3	NA	chr16:50129751-50139392	inter
CUST_33800_PI429285431	4.0261126	P	3.4638445	P	1.47658877875512	0	lncRNA	35352-1_{1..420}	n340588|AB002443|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3050|NULL|-1.2600100|-0.2495811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340588|AB002443|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3050|NULL|-1.2600100|-0.2495811	chr5	114914611	114915030	+	NA	NA	NA	NA	TMED7-TICAM2	NA	chr5:114914339-114925030	inner
CUST_27441_PI429285431	9.163331	P	9.152428	P	1.00758601280883	0	lncRNA	29009-1_{1..316}	n324615|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039666|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039666|-1.0206000|-0.2030627	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324615|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039666|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039666|-1.0206000|-0.2030627	chr6	  2997195	  2997510	-	NA	NA	NA	NA	NQO2	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-18.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00chr6:3000067-3008997"	NA	inter
CUST_27709_PI429285431	4.6588254	P	4.8503075	P	0.87570563489478	0	lncRNA	29288-1_{1..499}	n324920|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080041|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080041|-0.9360700|-0.1963702	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324920|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080041|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080041|-0.9360700|-0.1963702	chr20	 60735477	 60735975	-	NA	NA	NA	NA	SS18L1	NA	chr20:60725477-60747301	inner
LNCA_21_P0004109	0.9027979	A	0.899585	A	1.0022294942108	0	lncRNA	ENST00000504244	NA	NA	NA	NA	XLOC_004750	NA	ENST00000504244	NA	NA	"BROAD Institute lincRNA (XLOC_004750), lincRNA [TCONS_00009616]"	chr5:20614853-20614794	hs|5p14.3	Agilent_HUMAN_G3V2	ENST00000504244	ENST00000504244	chr5	 20614794	 20614853	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47756_PI429285431	1.5586767	A	0.89000624	A	1.58960736275375	0	lncRNA	51696-2_{3001..6000}	"gi|385137074|ref|NR_047612.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 42, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137074|ref|NR_047612.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 42, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047612.1	NA	NA	NA	NA	NA	inter
CUST_25879_PI429285431	3.0335507	P	3.3516881	P	0.802104771521476	0	lncRNA	27399-1_{1..901}	lnc-TOR2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TOR2A-1:1	chr9	130486806	130487706	-	lnc-TOR2A-1	lnc-TOR2A-1:1	ENSG00000242194.1	RP11-56D16.8	TTC16	"hg19_refFlat_TTC16:range=chr9:130478425-1304936845'pad=0,hg19_refFlat_TTC16:range=chr9:130478425-1304936845'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.60chr9:130478358-130493879"	NA	inner
CUST_27868_PI429285431	5.9729123	P	6.3885403	P	0.749693084882573	0	lncRNA	29461-1_{1..880}	n325104|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329068|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329068|-1.1936000|-0.4172319	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325104|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329068|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329068|-1.1936000|-0.4172319	chr2	237326155	237327034	+	NA	NA	NA	NA	IQCA1	NA	chr2:237316155-237337745	inter
CUST_42042_PI429285431	5.6355762	P	5.6479025	P	0.991492455636344	0	lncRNA	43926-1_{1..72}	ENST00000408803 ncrna:miRNA chromosome:GRCh37:9:4378423:4378494:-1 gene:ENSG00000221730 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408803 ncrna:miRNA chromosome:GRCh37:9:4378423:4378494:-1 gene:ENSG00000221730 gene_biotype:miRNA transcript_biotype:miRNA	chr9	  4378423	  4378494	-	ENSG00000221730	ENST00000408803	NA	NA	NA	NA	NA	inter
CUST_21931_PI429285431	3.0422556	A	4.347779	P	0.404574304825101	0	lncRNA	23539-1_{1..464}	lnc-PXMP4-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PXMP4-2:3	chr20	 32380775	 32381238	-	lnc-PXMP4-2	lnc-PXMP4-2:3	ENSG00000230753.1	RP4-553F4.6	ZNF341	NA	chr20:32370775-32380075	inter
CUST_1225_PI429285431	11.926508	P	11.982128	P	0.962180855810905	0	lncRNA	1217-1_{1..1262}	"transcript_id ""ENST00000343987.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000343987.2"" | genecode_v17"	chr2	208686014	208687275	-	ENSG00000244567.1	ENST00000343987.2	AC096772.6	AC096772.6-001	PLEKHM3	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30chr2:208686012-208697493"	NA	inner
CUST_10355_PI429285431	5.4538603	P	4.8079076	P	1.56477226022519	0	lncRNA	11881-3_{6001..8793}	lnc-VTI1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-VTI1A-1:1	chr10	114596541	114599333	+	lnc-VTI1A-1	lnc-VTI1A-1:1	XLOC_008617	linc-TCF7L2-3	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30"	NA	inter
CUST_46439_PI429285431	4.827496	P	4.1741304	P	1.57283311267068	0	lncRNA	50647-3_{6001..6526}	"gi|225703129|ref|NR_027409.1| Homo sapiens golgin A8 family, member A (GOLGA8A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225703129|ref|NR_027409.1| Homo sapiens golgin A8 family, member A (GOLGA8A), transcript variant 2, non-coding RNA"	Chr15	 34677269	 34677794	-	23015	NR_027409.1	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
CUST_26760_PI429285431	0.90001994	A	1.3198444	A	0.747515572783513	0	lncRNA	28259-1_{1..961}	n323811|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058387|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058387|0.2240400|-0.2926191	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323811|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058387|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058387|0.2240400|-0.2926191	chrX	133911244	133912204	+	NA	NA	NA	NA	FAM122B	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20chrX:133903596-133925078"	NA	inner
CUST_12327_PI429285431	0.8957371	A	0.89306223	A	1.00185579846535	0	lncRNA	13940-1_{1..3000}	lnc-EPSTI1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPSTI1-3:1	chr13	 43321328	 43324327	-	lnc-EPSTI1-3	lnc-EPSTI1-3:1	XLOC_010582	linc-KIAA0564-3	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60"	NA	inter
CUST_14157_PI429285431	0.90331393	A	0.9654639	A	0.957835644803531	0	lncRNA	15808-1_{1..591}	lnc-PRKD1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRKD1-6:1	chr14	 29299280	 29299870	-	lnc-PRKD1-6	lnc-PRKD1-6:1	XLOC_010984	linc-NOVA1-6	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60"	NA	inter
CUST_29062_PI429285431	0.8985947	A	0.89941007	A	0.999434988262668	0	lncRNA	30790-1_{1..473}	n326552|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001252|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001252|-1.0435200|-0.2884097	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326552|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001252|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001252|-1.0435200|-0.2884097	chr1	 80879556	 80880028	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46579_PI429285431	4.704896	P	4.8219833	P	0.922047321528519	0	lncRNA	50763-1_{1..552}	"gi|341915741|ref|XR_132604.1| PREDICTED: Homo sapiens uncharacterized LOC100507419 (LOC100507419), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|341915741|ref|XR_132604.1| PREDICTED: Homo sapiens uncharacterized LOC100507419 (LOC100507419), misc_RNA"	Chr16	  3104772	  3105323	-	100507419	XR_132604.2	NA	NA	NA	"hg19_refFlat_MMP25:range=chr16:3096919-31090995'pad=0,hg19_refFlat_MMP25:range=chr16:3096919-31090995'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.20"	NA	inter
CUST_1743_PI429285431	0.9784284	A	0.8876554	A	1.06494062775547	0	lncRNA	1729-1_{1..500}	"transcript_id ""ENST00000503465.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503465.1"" | genecode_v17"	chr4	 38368535	 38369034	+	ENSG00000248227.1	ENST00000503465.1	RP11-83C7.1	RP11-83C7.1-001	NA	NA	NA	inter
CUST_830_PI429285431	0.9113699	A	1.2718918	A	0.778882765112961	0	lncRNA	823-1_{1..580}	"transcript_id ""ENST00000453451.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453451.1"" | genecode_v17"	chr2	 35024917	 35025496	+	ENSG00000226994.2	ENST00000453451.1	AC012593.1	AC012593.1-001	NA	NA	NA	inter
CUST_49040_PI429285431	0.9057325	A	0.89245355	A	1.00924675627812	0	lncRNA	52869-1_{1..373}	hg19_lincRNAsTranscripts_TCONS_l2_00021295 range=chr4:130648077-130692662 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021295 range=chr4:130648077-130692662 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	130648077	130648449	-	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60"	NA	inter
CUST_10413_PI429285431	0.92278534	A	0.92893386	A	0.995747239404218	0	lncRNA	11940-1_{1..282}	lnc-ELF2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELF2-2:1	chr4	139933749	139934030	-	lnc-ELF2-2	lnc-ELF2-2:1	XLOC_004096	linc-SLC7A11-4	CCRN4L	NA	chr4:139936943-139943800	inter
CUST_3915_PI429285431	1.0934279	A	0.9051161	A	1.13942960788967	0	lncRNA	3885-1_{1..460}	"transcript_id ""ENST00000530102.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530102.1"" | genecode_v17"	chr11	 38670314	 38670773	+	ENSG00000254562.1	ENST00000530102.1	RP11-64I17.1	RP11-64I17.1-003	NA	NA	NA	inter
CUST_22505_PI429285431	0.89865077	A	0.8976691	A	1.00068067334577	0	lncRNA	24092-1_{1..684}	lnc-SLC43A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC43A1-1:1	chr11	 57244470	 57245153	-	lnc-SLC43A1-1	lnc-SLC43A1-1:1	ENSG00000255301.1	RP11-624G17.3	SLC43A1	"hg19_refFlat_RTN4RL2:range=chr11:57228339-572443845'pad=0,hg19_refFlat_RTN4RL2:range=chr11:57228339-572443845'pad=0 3'pad=0 strand=+ repeatMasking=none,-110.60chr11:57252004-57255007"	NA	inter
CUST_38680_PI429285431	1.1135983	A	0.8932772	A	1.1649928495609	0	lncRNA	39679-1_{1..2044}	n384014|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ywy.2||-1.0813700|-0.2723668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384014|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ywy.2||-1.0813700|-0.2723668	chr21	 39645397	 39647440	+	NA	NA	NA	NA	KCNJ15	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.16;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40chr21:39635397-39657441"	NA	inner
CUST_8970_PI429285431	0.89986545	A	1.0517294	A	0.900086806384002	0	lncRNA	10502-2_{3001..3546}	lnc-HBXIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HBXIP-1:1	chr1	110915172	110915717	-	lnc-HBXIP-1	lnc-HBXIP-1:1	ENSG00000248310	ENST00000509240	SLC16A4	NA	chr1:110905473-110925625	inner
CUST_2043_PI429285431	9.572645	P	9.328342	P	1.18452036295674	0	lncRNA	2035-1_{1..574}	"transcript_id ""ENST00000512521.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512521.1"" | genecode_v17"	chr5	  3452930	  3453503	+	ENSG00000249830.1	ENST00000512521.1	RP11-121L11.3	RP11-121L11.3-001	NA	NA	NA	inter
CUST_8671_PI429285431	0.8924864	A	0.894632	A	0.998513888767947	0	lncRNA	10221-2_{3001..6000}	lnc-MAGI2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAGI2-1:1	chr7	 79096975	 79099974	-	lnc-MAGI2-1	lnc-MAGI2-1:1	ENSG00000249657	XLOC_006507	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.04;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_13957_PI429285431	5.967115	P	6.0626154	P	0.935947556923277	0	lncRNA	15602-1_{1..1979}	lnc-KATNAL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KATNAL2-1:1	chr18	 44339774	 44341752	+	lnc-KATNAL2-1	lnc-KATNAL2-1:1	XLOC_012667	linc-KATNAL2	ST8SIA5	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-94.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-30.60chr18:44329774-44337039"	NA	inter
CUST_24953_PI429285431	1.3622494	A	2.426105	A	0.478351955113748	0	lncRNA	26492-1_{1..503}	lnc-KDM5A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-KDM5A-2:1	chr12	   366437	   366939	-	lnc-KDM5A-2	lnc-KDM5A-2:1	ENSG00000255746.1	RP11-283I3.4	SLC6A13	NA	chr12:356437-372039	inner
CUST_49399_PI429285431	0.8998804	A	0.8958549	A	1.00279416038503	0	lncRNA	53209-1_{1..855}	hg19_lincRNAsTranscripts_TCONS_l2_00022637 range=chr5:173763174-173786733 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022637 range=chr5:173763174-173786733 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	173763174	173764028	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10533_PI429285431	5.409748	P	6.01058	P	0.65937358598997	0	lncRNA	12062-1_{1..811}	lnc-MSL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MSL2-1:1	chr3	135559035	135559845	-	lnc-MSL2-1	lnc-MSL2-1:1	XLOC_003264	linc-KY-2	NA	NA	NA	inter
CUST_36575_PI429285431	0.9091886	A	0.919857	A	0.992632502670936	0	lncRNA	37770-1_{1..3000}	n345072|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_621|NULL|-1.7149800|-0.3925604	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345072|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_621|NULL|-1.7149800|-0.3925604	chrX	 93592259	 93595258	-	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	inter
CUST_12192_PI429285431	1.4342508	A	0.91120327	A	1.43698751772824	0	lncRNA	13792-1_{1..537}	lnc-RP11-383H13.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-383H13.1.1-3:1	chr8	 72464716	 72465252	+	lnc-RP11-383H13.1.1-3	lnc-RP11-383H13.1.1-3:1	XLOC_006838	linc-KCNB2-4	NA	NA	NA	inter
CUST_34223_PI429285431	0.8936028	A	0.88892746	A	1.00324595548029	0	lncRNA	35734-3_{6001..9000}	n341083|AF525782|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3549|NULL|-0.8545410|-0.3661285	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341083|AF525782|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3549|NULL|-0.8545410|-0.3661285	chr11	 84600423	 84603422	+	NA	NA	NA	NA	DLG2	NA	chr11:84584423-84614599	inner
CUST_25703_PI429285431	4.371867	P	4.850576	P	0.717619500742765	0	lncRNA	27231-1_{1..581}	lnc-MRPL11-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPL11-1:4	chr11	 66247510	 66248090	-	lnc-MRPL11-1	lnc-MRPL11-1:4	ENSG00000255517.1	CTD-3074O7.5	PELI3	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.60;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr11:66237510-66244808"	NA	inner
CUST_13923_PI429285431	2.9704223	P	2.795296	P	1.12906324374428	0	lncRNA	15570-1_{1..573}	lnc-KLHL25-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL25-9:2	chr15	 85873309	 85873881	-	lnc-KLHL25-9	lnc-KLHL25-9:2	XLOC_011559	linc-SEC11A-5	NA	NA	NA	inter
CUST_19176_PI429285431	8.059476	P	6.8487206	P	2.31458797666999	0	lncRNA	20845-1_{1..592}	lnc-TKT-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TKT-1:7	chr3	 53322083	 53322674	-	lnc-TKT-1	lnc-TKT-1:7	ENSG00000162290.11	DCP1A	DCP1A	NA	chr3:53317443-53332379	inner
CUST_9710_PI429285431	0.89782697	A	0.9908055	A	0.937585049372074	0	lncRNA	11225-1_{1..356}	lnc-SOX1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOX1-3:5	chr13	112855110	112855465	+	lnc-SOX1-3	lnc-SOX1-3:5	XLOC_010505	linc-C13orf28-3	NA	NA	NA	inter
CUST_4654_PI429285431	3.0517762	A	3.7637472	P	0.610485527744579	0	lncRNA	4600-1_{1..902}	"transcript_id ""ENST00000435281.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435281.1"" | genecode_v17"	chr13	 78513297	 78514198	-	ENSG00000233379.1	ENST00000435281.1	RP11-318G21.4	RP11-318G21.4-001	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70"	NA	inner
CUST_42524_PI429285431	4.062106	P	4.18069	P	0.921091254867968	0	lncRNA	45316-1_{1..134}	ENST00000517043 ncrna:snoRNA chromosome:GRCh37:8:118325767:118325900:1 gene:ENSG00000252852 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517043 ncrna:snoRNA chromosome:GRCh37:8:118325767:118325900:1 gene:ENSG00000252852 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	118325767	118325900	+	ENSG00000252852	ENST00000517043	NA	NA	NA	NA	NA	inter
LNCA_21_P0009723	3.7153313	P	4.0879893	P	0.772358203797572	0	lncRNA	TCONS_00027056	NA	NA	NA	NA	XLOC_013099	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013099), lincRNA [TCONS_00027056]"	chr19:46699413-46699472	hs|19q13.32	Agilent_HUMAN_G3V2	TCONS_00027056	TCONS_00027056	chr19	 46699413	 46699472	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28314_PI429285431	2.0769105	A	2.4611862	A	0.766163551739106	0	lncRNA	29959-1_{1..344}	n325619|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045950|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045950|-1.3550600|-0.1341347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325619|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045950|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045950|-1.3550600|-0.1341347	chr13	113531593	113531936	-	NA	NA	NA	NA	ATP11A	NA	chr13:113521593-113541482	inner
CUST_6976_PI429285431	2.750172	A	3.0107841	A	0.834733687327615	0	lncRNA	6924-1_{1..562}	"transcript_id ""ENST00000426354.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426354.1"" | genecode_v17"	chr22	 32555441	 32556002	-	ENSG00000230120.1	ENST00000426354.1	RP1-90G24.8	RP1-90G24.8-001	C22orf42	NA	chr22:32545519-32555243	inter
LNCA_19_P00807869	6.035713	P	6.1525726	P	0.922192859385247	0	lncRNA	TCONS_l2_00018856	NA	NA	NA	NA	XLOC_l2_009886	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009886), lincRNA [TCONS_l2_00018856]"	chr3:129963414-129963473	hs|3q22.1	Agilent_HUMAN_G3V2	TCONS_l2_00018856	TCONS_l2_00018856	chr3	129963414	129963473	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007280	4.891449	P	4.985704	P	0.936755858269836	0	lncRNA	TCONS_00019492	NA	NA	NA	NA	XLOC_009294	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009294), lincRNA [TCONS_00019492]"	chr11:118665287-118665346	hs|11q23.3	Agilent_HUMAN_G3V2	TCONS_00019492	TCONS_00019492	chr11	118665287	118665346	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49430_PI429285431	2.373154	A	1.8097693	A	1.47773205380059	0	lncRNA	53233-1_{1..942}	hg19_lincRNAsTranscripts_TCONS_l2_00022663 range=chr5:177375112-177379083 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022663 range=chr5:177375112-177379083 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	177375112	177376053	+	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-20.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40"	NA	inter
CUST_22316_PI429285431	3.177629	P	3.4566593	A	0.824144775786555	0	lncRNA	23915-1_{1..502}	lnc-MTFP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTFP1-2:1	chr22	 30888426	 30888927	+	lnc-MTFP1-2	lnc-MTFP1-2:1	ENSG00000181123.3	RP4-539M6.14	SEC14L4	"hg19_refFlat_SEC14L4:range=chr22:30885864-309015985'pad=0,hg19_refFlat_SEC14L4:range=chr22:30885864-309015985'pad=0 3'pad=0 strand=- repeatMasking=none,-99.90;hg19_refFlat_SEC14L4:range=chr22:30886094-309015985'pad=0,hg19_refFlat_SEC14L4:range=chr22:30886094-309015985'pad=0 3'pad=0 strand=- repeatMasking=none,-99.90;hg19_refFlat_SEC14L6:range=chr22:30920984-309426695'pad=0,hg19_refFlat_SEC14L6:range=chr22:30920984-309426695'pad=0 3'pad=0 strand=- repeatMasking=none,-99.90chr22:30884889-30898791"	NA	inner
CUST_8652_PI429285431	3.826439	P	4.161215	P	0.792907237770641	0	lncRNA	10204-1_{1..2373}	lnc-METTL11A-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-METTL11A-3:5	chr9	132271018	132273390	+	lnc-METTL11A-3	lnc-METTL11A-3:5	ENSG00000204054	RP11-492E3.1	NA	"hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-20.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-55.90;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20"	NA	inter
CUST_17799_PI429285431	2.1981254	A	2.753438	A	0.680509590946941	0	lncRNA	19531-1_{1..1753}	lnc-METTL2B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-METTL2B-1:1	chr7	128169669	128171421	+	lnc-METTL2B-1	lnc-METTL2B-1:1	XLOC_006240	linc-FAM71F2-3	NA	NA	NA	inter
CUST_12181_PI429285431	0.8902129	A	0.9002663	A	0.993055737732659	0	lncRNA	13781-1_{1..771}	lnc-ASB4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASB4-3:1	chr7	 95242363	 95243133	+	lnc-ASB4-3	lnc-ASB4-3:1	XLOC_006178	linc-DYNC1I1-2	NA	NA	NA	inter
CUST_41597_PI429285431	8.221404	P	8.393934	P	0.887285317151038	0	lncRNA	42934-1_{1..91}	ENST00000580920 ncrna:miRNA chromosome:GRCh37:1:154948169:154948259:1 gene:ENSG00000264349 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580920 ncrna:miRNA chromosome:GRCh37:1:154948169:154948259:1 gene:ENSG00000264349 gene_biotype:miRNA transcript_biotype:miRNA	chr1	154948169	154948259	+	ENSG00000264349	ENST00000580920	NA	NA	FLAD1	NA	chr1:154955770-154958259	inter
CUST_6213_PI429285431	11.394841	P	11.180183	P	1.1604287947776	0	lncRNA	6139-1_{1..646}	"transcript_id ""ENST00000585470.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585470.1"" | genecode_v17"	chr18	 56083997	 56084642	+	ENSG00000267675.1	ENST00000585470.1	RP11-1151B14.2	RP11-1151B14.2-001	NA	NA	NA	inter
CUST_19656_PI429285431	6.508943	P	7.1902237	P	0.623611440311102	0	lncRNA	21312-1_{1..655}	lnc-SAMD14-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAMD14-2:3	chr17	 48222478	 48223132	-	lnc-SAMD14-2	lnc-SAMD14-2:3	ENSG00000108819.9	PPP1R9B	PPP1R9B	NA	chr17:48212478-48227877	inner
CUST_27787_PI429285431	1.4022875	A	1.7165017	A	0.804288947586588	0	lncRNA	29373-1_{1..443}	n325014|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078469|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078469|-1.1564800|-0.4715406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325014|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078469|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078469|-1.1564800|-0.4715406	chr20	 25930171	 25930613	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006514	1.6973886	A	0.9251641	A	1.70790117724102	0	lncRNA	TCONS_00017242	NA	NA	NA	NA	XLOC_008062	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008062), lincRNA [TCONS_00017242]"	chrX:124338511-124338912	hs|Xq25	Agilent_HUMAN_G3V2	TCONS_00017242	TCONS_00017242	chrX	124338511	124338912	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27579_PI429285431	2.3140597	A	2.6946263	A	0.768135855877152	0	lncRNA	29157-1_{1..2155}	n324780|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206655|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206655|-0.5244530|-0.1410724	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324780|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206655|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206655|-0.5244530|-0.1410724	chr21	 45234206	 45236360	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90"	NA	inter
CUST_758_PI429285431	0.9042429	A	0.9157515	A	0.992054579412044	0	lncRNA	749-1_{1..442}	"transcript_id ""ENST00000438292.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438292.1"" | genecode_v17"	chr2	 12006011	 12006452	+	ENSG00000224184.1	ENST00000438292.1	AC096559.1	AC096559.1-006	NA	NA	NA	inter
CUST_40870_PI429285431	4.53515	P	4.0790067	P	1.37186954686932	0	lncRNA	41567-3_{6001..9000}	n410672|NR_037921|lncRNA|Homosapiens||RefGeneNoncode|NR_037921||4.1761400|-0.2266335	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n410672|NR_037921|lncRNA|Homosapiens||RefGeneNoncode|NR_037921||4.1761400|-0.2266335	chr20	  3833445	  3836444	+	NA	NA	NA	NA	MAVS	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr20:3827446-3856770"	NA	inner
CUST_32696_PI429285431	0.9048928	A	0.9066752	A	0.998765297338713	0	lncRNA	34342-1_{1..544}	n339326|BC062224|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1758|NULL|-1.0244400|-0.2529984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339326|BC062224|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1758|NULL|-1.0244400|-0.2529984	chr16	 86754289	 86754832	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37045_PI429285431	4.487571	P	4.314661	P	1.12733008344158	0	lncRNA	38182-1_{1..1158}	n345499|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1048|NULL|-1.3932600|-0.4523344	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345499|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1048|NULL|-1.3932600|-0.4523344	chr2	 62503073	 62504230	-	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90"	NA	inter
CUST_9860_PI429285431	0.9029832	A	0.90004337	A	1.00203981246849	0	lncRNA	11381-1_{1..665}	lnc-DHFR-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHFR-2:3	chr5	 80248487	 80249151	-	lnc-DHFR-2	lnc-DHFR-2:3	XLOC_004907	linc-MTRNR2L2-1	RASGRF2	NA	chr5:80256558-80258799	inter
CUST_40607_PI429285431	2.644849	A	2.7120361	A	0.954497219432285	0	lncRNA	41353-1_{1..1344}	n410089|NR_036524|lncRNA|Homosapiens||RefGeneNoncode|NR_036524||-1.2834600|-0.3556124	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410089|NR_036524|lncRNA|Homosapiens||RefGeneNoncode|NR_036524||-1.2834600|-0.3556124	chr6	  2661918	  2663261	+	NA	NA	NA	NA	MYLK4	NA	chr6:2663863-2686634	inner
CUST_13831_PI429285431	2.5107875	A	2.6712496	A	0.894738437340603	0	lncRNA	15474-1_{1..234}	lnc-B3GALTL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-B3GALTL-1:1	chr13	 32017502	 32017735	+	lnc-B3GALTL-1	lnc-B3GALTL-1:1	XLOC_010339	linc-RXFP2-2	NA	NA	NA	inter
CUST_51934_PI429285431	0.9306551	A	1.3496063	A	0.747968179212585	0	lncRNA	55475-1_{1..1015}	hg19_lincRNAsTranscripts_TCONS_l2_00016472 range=chr20:6711403-6715712 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016472 range=chr20:6711403-6715712 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	  6711403	  6712417	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32265_PI429285431	0.90630877	A	0.91344327	A	0.995066949099772	0	lncRNA	33954-1_{1..2400}	n338843|AK124350|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1266|NULL|-0.9108260|-0.2443005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338843|AK124350|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1266|NULL|-0.9108260|-0.2443005	chr12	  3280822	  3283221	+	NA	NA	NA	NA	TSPAN9	NA	chr12:3270822-3293222	inner
CUST_27283_PI429285431	0.92365307	A	0.9404101	A	0.988452106627542	0	lncRNA	28838-2_{3001..3334}	n324431|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041713|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041713|0.3399850|-0.3513403	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324431|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041713|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041713|0.3399850|-0.3513403	chr6	108554529	108554862	+	NA	NA	NA	NA	SNX3	"hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr6:108541529-108582464"	NA	inner
CUST_49315_PI429285431	6.9273877	P	7.3931794	P	0.724073622244557	0	lncRNA	53131-2_{3001..4105}	hg19_lincRNAsTranscripts_TCONS_l2_00022844 range=chr5:36487554-36522410 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022844 range=chr5:36487554-36522410 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 36490554	 36491658	-	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80"	NA	inter
CUST_15547_PI429285431	2.1762207	A	1.4141098	A	1.69597029353	0	lncRNA	17233-1_{1..2414}	lnc-DOCK3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DOCK3-1:1	chr3	 50708802	 50711215	+	lnc-DOCK3-1	lnc-DOCK3-1:1	XLOC_002650	linc-DOCK3	DOCK3	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50chr3:50712672-50719456"	NA	inter
CUST_11741_PI429285431	1.5627825	A	1.5542572	A	1.00592678194135	0	lncRNA	13321-1_{1..987}	lnc-RAP1GDS1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAP1GDS1-3:1	chr4	 99599126	 99600112	+	lnc-RAP1GDS1-3	lnc-RAP1GDS1-3:1	XLOC_003615	linc-METAP1-2	NA	NA	NA	inter
CUST_12540_PI429285431	1.2339416	A	0.93041754	A	1.234155396221	0	lncRNA	14151-1_{1..276}	lnc-FABP5-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FABP5-2:4	chr8	 82074860	 82075135	+	lnc-FABP5-2	lnc-FABP5-2:4	XLOC_006858	linc-FABP5-1	NA	NA	NA	inter
CUST_21154_PI429285431	0.91066897	A	0.91192317	A	0.999131032577196	0	lncRNA	22777-1_{1..583}	lnc-MBOAT4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MBOAT4-1:1	chr8	 30038157	 30038739	-	lnc-MBOAT4-1	lnc-MBOAT4-1:1	ENSG00000253708.1	RP11-51J9.4	DCTN6	NA	chr8:30028157-30041155	inner
CUST_34949_PI429285431	0.8923324	A	0.89305806	A	0.999497137294807	0	lncRNA	36366-1_{1..1867}	n341867|AK093502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4347|NULL|-0.9876940|-0.3474941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341867|AK093502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4347|NULL|-0.9876940|-0.3474941	chr12	 26455415	 26457281	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46691_PI429285431	4.463799	P	4.309511	P	1.11287225708093	0	lncRNA	50853-1_{1..3000}	"gi|310124423|ref|XR_109337.1| PREDICTED: Homo sapiens uncharacterized LOC100506735 (LOC100506735), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124423|ref|XR_109337.1| PREDICTED: Homo sapiens uncharacterized LOC100506735 (LOC100506735), misc_RNA"	NA	NA	NA	NA	NA	XR_109337.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009947	3.8747644	P	3.6742747	P	1.14908832865616	0	lncRNA	TCONS_00028128	NA	NA	NA	NA	XLOC_013486	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013486), lincRNA [TCONS_00028128]"	chr20:22666488-22709041	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028128	TCONS_00028128	chr20	 22666488	 22709041	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17413_PI429285431	1.6322204	A	2.0119631	A	0.768574651227697	0	lncRNA	19138-1_{1..2781}	lnc-OR5AK2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-OR5AK2-1:2	chr11	 56643073	 56645853	+	lnc-OR5AK2-1	lnc-OR5AK2-1:2	XLOC_009132	linc-OR5AK2	NA	NA	NA	inter
LNCA_21_P0007714	0.9025092	A	1.1399416	A	0.848253627705144	0	lncRNA	TCONS_00020814	NA	NA	NA	NA	XLOC_010103	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010103), lincRNA [TCONS_00020814]"	chr12:58475072-58475013	hs|12q14.1	Agilent_HUMAN_G3V2	TCONS_00020814	TCONS_00020814	chr12	 58475013	 58475072	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47707_PI429285431	6.310471	P	6.672252	P	0.778203298253237	0	lncRNA	51672-1_{1..3000}	"gi|385137066|ref|NR_047604.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 34, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137066|ref|NR_047604.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 34, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047604.1	NA	NA	NA	NA	NA	inter
CUST_14483_PI429285431	0.9025495	A	1.0096604	A	0.928445479938797	0	lncRNA	16148-1_{1..224}	lnc-C10orf96-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf96-1:1	chr10	118040299	118040522	+	lnc-C10orf96-1	lnc-C10orf96-1:1	XLOC_008630	linc-C10orf96	GFRA1	NA	chr10:118030299-118033126	inter
CUST_39449_PI429285431	0.9089612	A	0.89547586	A	1.00939114808115	0	lncRNA	40393-2_{3001..3831}	n386901|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010urx.1||2.4803800|-0.1521312	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386901|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010urx.1||2.4803800|-0.1521312	chr15	100333360	100334190	-	NA	NA	NA	NA	NA	"hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-59.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_GOLGA8B:range=chr15:34819833-348281135'pad=0,hg19_refFlat_GOLGA8B:range=chr15:34819833-348281135'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0,hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0,hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0,hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_GOLGA2:range=chr9:131019346-1310382555'pad=0,hg19_refFlat_GOLGA2:range=chr9:131019346-1310382555'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0,hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_GOLGA8A:range=chr15:34673612-346818925'pad=0,hg19_refFlat_GOLGA8A:range=chr15:34673612-346818925'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0,hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
CUST_23614_PI429285431	0.90914685	A	0.9161327	A	0.995169482426948	0	lncRNA	25181-1_{1..731}	lnc-LOX-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LOX-1:2	chr5	121490319	121491049	-	lnc-LOX-1	lnc-LOX-1:2	ENSG00000247311.2	CTC-441N14.2	LOC100505841	NA	chr5:121495871-121500551	inter
CUST_52113_PI429285431	0.88767254	A	0.8868388	A	1.00057807154932	0	lncRNA	55638-1_{1..1802}	hg19_lincRNAsTranscripts_TCONS_l2_00017581 range=chr22:18957952-18982142 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017581 range=chr22:18957952-18982142 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 18957952	 18959753	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23358_PI429285431	10.25873	P	10.692465	P	0.740342625608229	0	lncRNA	24928-1_{1..126}	lnc-CEP170-1:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CEP170-1:15	chr1	243220666	243220791	-	lnc-CEP170-1	lnc-CEP170-1:15	ENSG00000214837.3	RP11-261C10.3	NA	NA	NA	inter
CUST_32121_PI429285431	0.8979362	A	0.9065231	A	0.994065692450686	0	lncRNA	33822-1_{1..1857}	n338687|AF119909|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1104|NULL|-0.9067000|-0.4439128	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338687|AF119909|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1104|NULL|-0.9067000|-0.4439128	chr2	 15636730	 15638586	+	NA	NA	NA	NA	DDX1	NA	chr2:15626730-15648496	inter
LNCA_21_P0006961	2.5694985	A	2.658729	A	0.940024002476186	0	lncRNA	TCONS_00018421	NA	NA	NA	NA	XLOC_008710	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008710), lincRNA [TCONS_00018421]"	chr10:5606948-5606889	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_00018421	TCONS_00018421	chr10	  5606889	  5606948	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14381_PI429285431	6.933468	P	7.145559	P	0.863285103946169	0	lncRNA	16042-1_{1..343}	lnc-C5orf39-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf39-1:2	chr5	 43067566	 43067908	-	lnc-C5orf39-1	lnc-C5orf39-1:2	XLOC_004805	linc-C5orf39	NA	NA	NA	inter
CUST_22150_PI429285431	4.0443797	P	3.9850075	P	1.04201222242165	0	lncRNA	23751-1_{1..415}	lnc-MPI-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MPI-1:1	chr15	 75192825	 75193239	+	lnc-MPI-1	lnc-MPI-1:1	ENSG00000260824.1	CTD-2235H24.2	MPI	NA	chr15:75182825-75190565	inner
CUST_6616_PI429285431	2.3034325	A	2.222795	A	1.05748522030785	0	lncRNA	6563-1_{1..459}	"transcript_id ""ENST00000596379.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596379.1"" | genecode_v17"	chr19	 58911588	 58912046	+	ENSG00000268307.1	ENST00000596379.1	CTD-2619J13.13	CTD-2619J13.13-001	RPS5	NA	chr19:58901588-58906171	inter
CUST_23494_PI429285431	1.018956	A	0.9176924	A	1.0727125980903	0	lncRNA	25061-1_{1..342}	lnc-COG5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COG5-2:1	chr7	106774049	106774390	-	lnc-COG5-2	lnc-COG5-2:1	ENSG00000243193.1	CTA-360L10.1	PRKAR2B	NA	chr7:106764049-106784178	inner
CUST_29954_PI429285431	3.3634346	P	3.9673514	P	0.657965206172125	0	lncRNA	31720-1_{1..387}	n334160|M97712|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196975|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196975|0.1431340|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334160|M97712|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196975|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196975|0.1431340|-1.0000000	chr14	 22508938	 22509324	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33644_PI429285431	0.8960529	A	0.8980828	A	0.998593969925981	0	lncRNA	35209-1_{1..279}	n340406|AF009259|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2867|NULL|-1.0180100|-0.2847899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340406|AF009259|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2867|NULL|-1.0180100|-0.2847899	chr5	 11239640	 11239918	-	NA	NA	NA	NA	CTNND2	NA	chr5:11229640-11249919	inner
CUST_23078_PI429285431	6.3108225	P	6.57414	P	0.833169827773257	0	lncRNA	24649-1_{1..334}	lnc-FAM169B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM169B-1:1	chr15	 99190510	 99190843	-	lnc-FAM169B-1	lnc-FAM169B-1:1	ENSG00000259424.1	RP11-35O15.1	IGF1R	NA	chr15:99192761-99200600	inter
CUST_310_PI429285431	3.4469368	P	2.9818337	A	1.38041599919511	0	lncRNA	301-2_{3001..3368}	"transcript_id ""ENST00000484933.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000484933.2"" | genecode_v17"	chr1	 87600686	 87601053	+	ENSG00000267272.1	ENST00000484933.2	RP5-1052I5.1	RP5-1052I5.1-005	NA	NA	NA	inter
CUST_34639_PI429285431	0.8918458	A	1.9151268	A	0.49199617344516	0	lncRNA	36093-1_{1..2106}	n341539|BC036404|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4009|NULL|-0.9062050|-0.3863231	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341539|BC036404|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4009|NULL|-0.9062050|-0.3863231	chr8	 79446126	 79448231	-	NA	NA	NA	NA	PKIA	NA	chr8:79436126-79480738	inner
CUST_30718_PI429285431	7.9693184	P	6.276091	P	3.23379315092644	0	lncRNA	32500-1_{1..269}	n336263|Y09530|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325527|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325527|2.2339700|-0.0470985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336263|Y09530|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325527|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325527|2.2339700|-0.0470985	chr3	123339094	123339362	-	NA	NA	NA	NA	MYLK	NA	chr3:123331143-123349363	inner
CUST_8503_PI429285431	1.2114007	A	1.5981922	A	0.764828664901135	0	lncRNA	10066-1_{1..567}	lnc-SNX10-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SNX10-2:7	chr7	 26533415	 26533981	+	lnc-SNX10-2	lnc-SNX10-2:7	ENSG00000214870	AC004540.5	NA	NA	NA	inter
CUST_24425_PI429285431	0.8925329	A	0.9921511	A	0.933279945416517	0	lncRNA	25978-1_{1..2774}	lnc-TNPO3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNPO3-1:2	chr7	128550654	128553427	-	lnc-TNPO3-1	lnc-TNPO3-1:2	ENSG00000135253.8	KCP	KCP	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90chr7:128540654-128550773"	NA	inner
CUST_10069_PI429285431	1.3917577	A	1.7415112	A	0.784718164000693	0	lncRNA	11593-1_{1..471}	lnc-KLF6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF6-1:1	chr10	  3731617	  3732087	-	lnc-KLF6-1	lnc-KLF6-1:1	XLOC_008697	linc-PITRM1-1	NA	NA	NA	inter
LNCA_21_P0009077	7.10709	P	7.5113363	P	0.755630950204799	0	lncRNA	TCONS_00024751	NA	NA	NA	NA	XLOC_012036	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012036), lincRNA [TCONS_00024751]"	chr16:85434584-85434525	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024751	TCONS_00024751	chr16	 85434525	 85434584	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23148_PI429285431	3.058931	P	2.5207355	A	1.45215504849973	0	lncRNA	24719-1_{1..519}	lnc-KIF16B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIF16B-4:1	chr20	 15533257	 15533775	-	lnc-KIF16B-4	lnc-KIF16B-4:1	ENSG00000225181.1	RP11-388K2.1	MACROD2	NA	chr20:15523257-15543530	inner
CUST_28347_PI429285431	2.8751943	P	2.7569559	A	1.08540871682461	0	lncRNA	29993-1_{1..931}	n325653|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045448|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045448|-1.0276200|-0.3507033	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325653|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045448|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045448|-1.0276200|-0.3507033	chr13	 90798074	 90799004	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19732_PI429285431	0.8989525	A	3.6064866	A	0.153091480012879	0	lncRNA	21390-1_{1..568}	lnc-ICA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ICA1-1:1	chr7	  8009403	  8009970	-	lnc-ICA1-1	lnc-ICA1-1:1	ENSG00000233108.1	AC006042.7	GLCCI1	NA	chr7:8008423-8019534	inner
CUST_35555_PI429285431	1.9185956	A	1.520637	A	1.31764213974634	0	lncRNA	36969-1_{1..1674}	n342684|BC043373|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5186|NULL|-0.8533640|-0.2728719	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342684|BC043373|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5186|NULL|-0.8533640|-0.2728719	chr5	121964646	121966319	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46178_PI429285431	4.0485444	P	3.6810918	P	1.29007290680469	0	lncRNA	50425-1_{1..2727}	"gi|221316647|ref|NR_002815.2| Homo sapiens transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 6 (TPTE2P6), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|221316647|ref|NR_002815.2| Homo sapiens transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 6 (TPTE2P6), non-coding RNA"	Chr13	 25154346	 25157072	+	374491	NR_002815.2	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90"	NA	inter
CUST_29883_PI429285431	4.088068	P	3.4810057	A	1.52315451277006	0	lncRNA	31646-1_{1..388}	n333913|L40522|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193631_09|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193631_09|-1.0621700|-0.2059803	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333913|L40522|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193631_09|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193631_09|-1.0621700|-0.2059803	chr5	 70528926	 70529313	-	NA	NA	NA	NA	LOC100652870	NA	chr5:70519357-70519728	inter
CUST_43013_PI429285431	2.4143312	A	2.1177485	A	1.22823166266068	0	lncRNA	46243-1_{1..118}	ENST00000408644 ncrna:snRNA chromosome:GRCh37:1:220999118:220999235:1 gene:ENSG00000221571 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408644 ncrna:snRNA chromosome:GRCh37:1:220999118:220999235:1 gene:ENSG00000221571 gene_biotype:snRNA transcript_biotype:snRNA	chr1	220999118	220999235	+	ENSG00000221571	ENST00000408644	NA	NA	NA	NA	NA	inter
CUST_6953_PI429285431	8.26524	P	8.230836	P	1.02413364991932	0	lncRNA	6902-1_{1..188}	"transcript_id ""ENST00000420391.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420391.1"" | genecode_v17"	chr22	 26557800	 26557987	+	ENSG00000236464.1	ENST00000420391.1	CTA-796E4.3	CTA-796E4.3-001	SEZ6L	NA	chr22:26565440-26570269	inter
CUST_7788_PI429285431	1.199967	A	0.89234245	A	1.23766815555171	0	lncRNA	9412-1_{1..1381}	lnc-NAA16-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NAA16-2:1	chr13	 41793286	 41794666	+	lnc-NAA16-2	lnc-NAA16-2:1	ENSG00000247513	ENST00000436156	MTRF1	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.50;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50chr13:41790516-41804134"	NA	inner
CUST_44917_PI429285431	7.1363406	P	7.3684993	P	0.851360050899935	0	lncRNA	49433-1_{1..1058}	"gi|310119947|ref|XR_108766.1| PREDICTED: Homo sapiens uncharacterized FLJ20712 (FLJ20712), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119947|ref|XR_108766.1| PREDICTED: Homo sapiens uncharacterized FLJ20712 (FLJ20712), misc_RNA"	Chr7	 33765567	 33766624	+	55025	XR_108766.2	NA	NA	NA	NA	NA	inter
CUST_12209_PI429285431	6.828908	P	6.784715	P	1.03110624828771	0	lncRNA	13811-1_{1..208}	lnc-ARMCX3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARMCX3-2:2	chrX	100926005	100926212	+	lnc-ARMCX3-2	lnc-ARMCX3-2:2	XLOC_008029	linc-TCEAL2	NA	NA	NA	inter
CUST_27060_PI429285431	7.94498	P	7.6754904	P	1.20538130965057	0	lncRNA	28594-1_{1..528}	n324171|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051452|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051452|-1.1412500|-0.5238864	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324171|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051452|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051452|-1.1412500|-0.5238864	chr9	    62705	    63232	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33273_PI429285431	0.9124187	A	0.9103784	A	1.00141522868477	0	lncRNA	34858-1_{1..2700}	n339980|BC036474|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2433|NULL|-0.9772850|-0.3569391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339980|BC036474|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2433|NULL|-0.9772850|-0.3569391	chr4	 46921731	 46924430	-	NA	NA	NA	NA	GABRA4	NA	chr4:46920917-46934411	inner
LNCA_21_P0013211	0.9106533	A	1.1528696	A	0.84544552214261	0	lncRNA	TCONS_l2_00025926	NA	NA	NA	NA	XLOC_l2_013437	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013437), lincRNA [TCONS_l2_00025926]"	chr7:63411713-63411772	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025926	TCONS_l2_00025926	chr7	 63411713	 63411772	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001754	1.3203253	A	0.9040337	A	1.33449287241229	0	lncRNA	TCONS_00002579	NA	NA	NA	NA	XLOC_001192	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001192), lincRNA [TCONS_00002579]"	chr1:212606024-212605185	hs|1q32.3	Agilent_HUMAN_G3V2	TCONS_00002579	TCONS_00002579	chr1	212605185	212606024	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32340_PI429285431	0.92180264	A	1.7396283	A	0.567296292270385	0	lncRNA	34022-1_{1..3000}	n338920|CR749844|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1346|NULL|0.4480540|-0.3244629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338920|CR749844|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1346|NULL|0.4480540|-0.3244629	chr2	100889908	100892907	-	NA	NA	NA	NA	LONRF2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30chr2:100889753-100908479"	NA	inner
CUST_4575_PI429285431	1.5021634	A	1.3742247	A	1.0927313080463	0	lncRNA	4524-1_{1..508}	"transcript_id ""ENST00000420210.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420210.1"" | genecode_v17"	chr13	 30915496	 30916003	-	ENSG00000238121.1	ENST00000420210.1	LINC00426	LINC00426-002	NA	NA	NA	inter
CUST_38651_PI429285431	8.355815	P	8.021558	P	1.26072795617782	0	lncRNA	39654-1_{1..1073}	n383900|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xii.3||-0.8809890|-0.1687303	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383900|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xii.3||-0.8809890|-0.1687303	chr20	 37049238	 37050310	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34092_PI429285431	0.9195357	A	0.9097515	A	1.00680493974041	0	lncRNA	35619-1_{1..2143}	n340915|AX746631|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3380|NULL|1.1773400|-0.1161032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340915|AX746631|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3380|NULL|1.1773400|-0.1161032	chr17	 78437250	 78439392	-	NA	NA	NA	NA	NPTX1	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50chr17:78440633-78449393"	NA	inter
CUST_26698_PI429285431	0.9067721	A	0.89627457	A	1.00730287016023	0	lncRNA	28203-3_{6001..9000}	n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	chr13	 70687309	 70690308	+	NA	NA	NA	NA	KLHL1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0,hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0 3'pad=0 strand=- repeatMasking=none,-105.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr13:70671309-70682625"	NA	inner
CUST_44824_PI429285431	1.6532993	A	0.9257328	A	1.65584370114953	0	lncRNA	49356-1_{1..3000}	"gi|300796161|ref|NR_034115.1| Homo sapiens STXBP5 antisense RNA 1 (STXBP5-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300796161|ref|NR_034115.1| Homo sapiens STXBP5 antisense RNA 1 (STXBP5-AS1), non-coding RNA"	Chr6	147162524	147165523	-	729178	NR_034115.1	NA	NA	NA	"hg19_refFlat_STXBP5:range=chr6:147525669-1477058915'pad=0,hg19_refFlat_STXBP5:range=chr6:147525669-1477058915'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.70"	NA	inter
CUST_26294_PI429285431	0.8997863	A	0.8963125	A	1.002410755886	0	lncRNA	27800-1_{1..831}	lnc-TEFM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TEFM-1:1	chr17	 29191338	 29192168	-	lnc-TEFM-1	lnc-TEFM-1:1	ENSG00000263531.1	RP13-753N3.1	ATAD5	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60chr17:29181338-29201958"	NA	inner
CUST_36913_PI429285431	0.9046968	A	0.9083811	A	0.9974494959192	0	lncRNA	38073-1_{1..3000}	n345387|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_936|NULL|-1.5503700|-0.2582715	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345387|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_936|NULL|-1.5503700|-0.2582715	chr20	 36121184	 36124183	-	NA	NA	NA	NA	BLCAP	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60chr20:36145819-36153449"	NA	inter
CUST_28828_PI429285431	1.1996597	A	1.3060231	A	0.928926657735386	0	lncRNA	30536-1_{1..347}	n326241|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098644|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098644|-1.0677400|-0.3997209	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326241|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098644|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098644|-1.0677400|-0.3997209	chr1	211971381	211971727	+	NA	NA	NA	NA	LPGAT1	NA	chr1:211961381-212004114	inner
CUST_19708_PI429285431	1.471258	A	2.7806535	A	0.403489909482605	0	lncRNA	21365-1_{1..516}	lnc-U2SURP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-U2SURP-2:1	chr3	142719869	142720384	+	lnc-U2SURP-2	lnc-U2SURP-2:1	ENSG00000241570.2	RP11-372E1.6	U2SURP	NA	chr3:142720372-142729932	inter
LNCA_21_P0012663	0.9134094	A	0.9034258	A	1.00694410344001	0	lncRNA	TCONS_l2_00021110	NA	NA	NA	NA	XLOC_l2_011102	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011102), lincRNA [TCONS_l2_00021110]"	chr4:38607654-38607595	hs|4p14	Agilent_HUMAN_G3V2	TCONS_l2_00021110	TCONS_l2_00021110	chr4	 38607595	 38607654	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17036_PI429285431	0.89832723	A	0.90002435	A	0.998824337689999	0	lncRNA	18747-1_{1..418}	lnc-ASAP2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASAP2-4:1	chr2	  9244565	  9244982	+	lnc-ASAP2-4	lnc-ASAP2-4:1	XLOC_001335	linc-ASAP2-3	NA	NA	NA	inter
CUST_47526_PI429285431	4.108762	P	3.9267507	P	1.13446437066497	0	lncRNA	51537-1_{1..1877}	"gi|239787898|ref|NR_027779.1| Homo sapiens tubulin tyrosine ligase-like family, member 1 (TTLL1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239787898|ref|NR_027779.1| Homo sapiens tubulin tyrosine ligase-like family, member 1 (TTLL1), transcript variant 2, non-coding RNA"	Chr22	 43435522	 43437398	-	25809	NR_027779.1	NA	NA	NA	NA	NA	inter
CUST_5178_PI429285431	1.5064833	A	1.323102	A	1.13554218290406	0	lncRNA	5119-1_{1..1943}	"transcript_id ""ENST00000558061.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000558061.1"" | genecode_v17"	chr15	 48938148	 48940090	+	ENSG00000259705.1	ENST00000558061.1	RP11-227D13.1	RP11-227D13.1-001	FBN1	NA	chr15:48928148-48937985	inter
CUST_33843_PI429285431	4.7405915	P	4.4338155	P	1.23694041026304	0	lncRNA	35390-1_{1..3000}	n340631|D87076|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3093|NULL|9.2830400|-0.1678169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340631|D87076|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3093|NULL|9.2830400|-0.1678169	chr5	133861797	133864796	+	NA	NA	NA	NA	PHF15	NA	chr5:133861798-133918918	inner
CUST_35550_PI429285431	0.8909381	A	0.89090055	A	1.00002602801535	0	lncRNA	36964-1_{1..3000}	n342676|BX640993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5178|NULL|1.3095400|-0.3088742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342676|BX640993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5178|NULL|1.3095400|-0.3088742	chr17	 21919350	 21922349	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46838_PI429285431	1.292333	A	0.8982335	A	1.3141222565977	0	lncRNA	50975-1_{1..2830}	"gi|299782585|ref|NR_003562.2| Homo sapiens membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3) (MPP3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299782585|ref|NR_003562.2| Homo sapiens membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3) (MPP3), transcript variant 2, non-coding RNA"	Chr17	 41878167	 41880996	-	4356	NR_003562.2	NA	NA	NA	NA	NA	inter
CUST_34661_PI429285431	1.3610239	A	0.8947754	A	1.38151238911818	0	lncRNA	36113-1_{1..2211}	n341561|AK074272|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4032|NULL|-1.3323000|-0.4538090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341561|AK074272|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4032|NULL|-1.3323000|-0.4538090	chr8	 95439939	 95442149	-	NA	NA	NA	NA	RAD54B	NA	chr8:95429939-95452116	inner
CUST_40227_PI429285431	1.6515875	A	1.7170409	A	0.955644937059478	0	lncRNA	41049-1_{1..1471}	n408069|NR_027921|lncRNA|Homosapiens||RefGeneNoncode|NR_027921||1.7080900|-0.2056617	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408069|NR_027921|lncRNA|Homosapiens||RefGeneNoncode|NR_027921||1.7080900|-0.2056617	chr17	 34310691	 34312161	-	NA	NA	NA	NA	CCL16	NA	chr17:34303535-34308523	inter
CUST_4413_PI429285431	7.445781	P	7.465128	P	0.986679199218376	0	lncRNA	4363-1_{1..602}	"transcript_id ""ENST00000442119.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442119.1"" | genecode_v17"	chr12	112277574	112278175	-	ENSG00000234608.2	ENST00000442119.1	MAPKAPK5-AS1	MAPKAPK5-AS1-003	MAPKAPK5	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20chr12:112280279-112289710"	NA	inter
CUST_21696_PI429285431	1.031222	A	2.7832172	A	0.296890904304357	0	lncRNA	23307-1_{1..360}	lnc-AC011294.3.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC011294.3.1-3:2	chr7	 46940327	 46940686	-	lnc-AC011294.3.1-3	lnc-AC011294.3.1-3:2	ENSG00000232072.1	AC004901.1	NA	NA	NA	inter
CUST_38826_PI429285431	1.2013941	A	0.917156	A	1.21776698032477	0	lncRNA	39820-1_{1..707}	n384619|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jgx.1||-1.1192300|-0.2249319	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n384619|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jgx.1||-1.1192300|-0.2249319	chr5	 27472390	 27473096	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38576_PI429285431	2.9109035	A	3.1474123	P	0.848796845682355	0	lncRNA	39587-2_{3001..5287}	n383554|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002qgs.1||2.6988000|-0.1765929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383554|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002qgs.1||2.6988000|-0.1765929	chr19	 55222600	 55224886	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36496_PI429285431	2.666469	A	2.7163084	A	0.966043862398522	0	lncRNA	37696-1_{1..3000}	n344996|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_545|NULL|-1.3841100|-0.3622088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344996|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_545|NULL|-1.3841100|-0.3622088	chr8	 30044744	 30047743	+	NA	NA	NA	NA	DCTN6	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.72;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr8:30034744-30041155"	NA	inter
LNCA_21_P0004319	0.91507167	A	0.925219	A	0.992991084644975	0	lncRNA	TCONS_00010149	NA	NA	NA	NA	XLOC_004616	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004616), lincRNA [TCONS_00010149]"	chr5:157922717-157922776	hs|5q33.3	Agilent_HUMAN_G3V2	TCONS_00010149	TCONS_00010149	chr5	157922717	157922776	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25485_PI429285431	9.32028	P	9.432092	P	0.925425013859777	0	lncRNA	27015-1_{1..562}	lnc-PLEKHF2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLEKHF2-2:1	chr8	 96444854	 96445415	+	lnc-PLEKHF2-2	lnc-PLEKHF2-2:1	ENSG00000253773.1	KB-1047C11.2	NA	NA	NA	inter
CUST_185_PI429201921	1.3212062	A	1.1252753	A	1.14546303302985	0	lncRNA	152-2_{3001..4855}	TC14002109.hg.1	TCONS_00022380-XLOC_011093 // Rinn lincRNAs // linc-SEL1L-3 chr14:-:85991476-85996332 // chr14 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr14:-:85991476-85996332	NA	Affy_HUMAN_HTA2.0	TCONS_00022380-XLOC_011093	linc-SEL1L-3	chr14	 85991476	 85996332	-	NA	NA	NA	NA	PRAMEF25	NA	chr1:13136777-13145000	Unknown
CUST_33826_PI429285431	1.5984619	A	1.3491186	A	1.18866592329102	0	lncRNA	35374-1_{1..977}	n340612|BC044238|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3074|NULL|-0.8223350|-0.1841923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340612|BC044238|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3074|NULL|-0.8223350|-0.1841923	chr5	131339284	131340260	+	NA	NA	NA	NA	ACSL6	NA	chr5:131329284-131347761	inner
CUST_34322_PI429285431	0.9044248	A	0.9056699	A	0.999137334755282	0	lncRNA	35816-1_{1..933}	n341185|BC030083|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3651|NULL|-1.0928900|-0.4182581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341185|BC030083|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3651|NULL|-1.0928900|-0.4182581	chr7	 11410061	 11410993	-	NA	NA	NA	NA	THSD7A	NA	chr7:11410062-11420947	inner
CUST_16082_PI429285431	0.92415464	A	0.9479052	A	0.983672134891346	0	lncRNA	17785-1_{1..269}	lnc-TNFRSF19-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFRSF19-3:1	chr13	 24079644	 24079912	+	lnc-TNFRSF19-3	lnc-TNFRSF19-3:1	XLOC_010311	linc-TNFRSF19-1	NA	NA	NA	inter
CUST_39373_PI429285431	0.91637	A	1.1035918	A	0.878295428679714	0	lncRNA	40336-1_{1..1261}	n386499|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mmw.2||1.7613900|-0.2450741	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386499|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mmw.2||1.7613900|-0.2450741	chr9	 42771707	 42772967	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30"	NA	inter
CUST_7909_PI429285431	0.89606667	A	0.89975965	A	0.997443494764878	0	lncRNA	9524-1_{1..2382}	lnc-RIMS3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RIMS3-5:1	chr1	 40936182	 40938563	-	lnc-RIMS3-5	lnc-RIMS3-5:1	ENSG00000250648	XLOC_000796	ZNF642	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90chr1:40943302-40948148"	NA	inter
CUST_24166_PI429285431	0.89869833	A	0.8977845	A	1.00063361933999	0	lncRNA	25717-1_{1..490}	lnc-GLS-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLS-2:2	chr2	191896898	191897387	+	lnc-GLS-2	lnc-GLS-2:2	ENSG00000231858.1	AC067945.4	STAT4	"hg19_refFlat_STAT4:range=chr2:191894566-1920129295'pad=0,hg19_refFlat_STAT4:range=chr2:191894566-1920129295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70chr2:191894306-191907040"	NA	inner
CUST_29370_PI429285431	11.048169	P	10.973662	P	1.05300114127376	0	lncRNA	31122-1_{1..333}	n332636|AB019563|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000058607|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000058607|0.9076480|-0.2235797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332636|AB019563|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000058607|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000058607|0.9076480|-0.2235797	chrM	     7586	     7918	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18144_PI429285431	4.590317	P	3.5858827	P	2.00615670192749	0	lncRNA	19879-1_{1..1055}	lnc-AL592284.1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL592284.1-1:6	chr1	144619883	144620937	+	lnc-AL592284.1-1	lnc-AL592284.1-1:6	ENSG00000225241	NBPF8	NBPF9	NA	chr1:144614959-144621685	inner
CUST_30196_PI429285431	0.90075594	A	0.9016302	A	0.999394192721298	0	lncRNA	31970-1_{1..342}	n334958|AJ459855|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248112_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248112_10|-0.6555360|-0.2217860	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334958|AJ459855|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248112_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248112_10|-0.6555360|-0.2217860	chr6	   735951	   736292	-	NA	NA	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TVP23C:range=chr17:15406178-154667625'pad=0,hg19_refFlat_TVP23C:range=chr17:15406178-154667625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00"	NA	inter
CUST_38337_PI429285431	1.4887244	A	1.470369	A	1.01280427539258	0	lncRNA	39382-2_{3001..3832}	n382063|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vgn.2||1.7704000|-0.4029430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n382063|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vgn.2||1.7704000|-0.4029430	chr13	 52796484	 52797315	-	NA	NA	NA	NA	NA	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60"	NA	inter
CUST_48562_PI429285431	4.461767	P	4.486896	P	0.9827327226009	0	lncRNA	52410-1_{1..1720}	hg19_lincRNAsTranscripts_TCONS_l2_00014208 range=chr2:208527107-208543837 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014208 range=chr2:208527107-208543837 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	208527107	208528826	+	NA	NA	NA	NA	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-25.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-25.06;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.61;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60"	NA	inter
LNCA_21_P0005478	0.9110029	A	0.9105397	A	1.00032111732117	0	lncRNA	TCONS_00013738	NA	NA	NA	NA	XLOC_006383	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006383), lincRNA [TCONS_00013738]"	chr7:25870951-25870892	hs|7p15.2	Agilent_HUMAN_G3V2	TCONS_00013738	TCONS_00013738	chr7	 25870892	 25870951	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24971_PI429285431	0.9020894	A	0.90681213	A	0.996731805229049	0	lncRNA	26510-1_{1..646}	lnc-SLC7A1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC7A1-2:3	chr13	 29824552	 29825197	-	lnc-SLC7A1-2	lnc-SLC7A1-2:3	ENSG00000236758.1	MTUS2-AS2	MTUS2	NA	chr13:29814552-29834691	inner
CUST_32827_PI429285431	3.9996328	P	3.7285206	P	1.20673776541138	0	lncRNA	34462-1_{1..1321}	n339477|BC033713|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1917|NULL|-0.9051580|-0.3256371	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339477|BC033713|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1917|NULL|-0.9051580|-0.3256371	chr3	123329580	123330900	-	NA	NA	NA	NA	MYLK	NA	chr3:123331143-123340850	inter
CUST_28616_PI429285431	0.9094684	A	0.9178134	A	0.994232383709013	0	lncRNA	30300-1_{1..553}	n325984|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047835|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047835|-1.2371900|-0.4828333	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325984|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047835|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047835|-1.2371900|-0.4828333	chr10	 46371558	 46372110	+	NA	NA	NA	NA	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20"	NA	inter
CUST_6956_PI429285431	0.9111395	A	0.9003854	A	1.00748202561052	0	lncRNA	6904-2_{3001..6000}	"transcript_id ""ENST00000434868.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434868.1"" | genecode_v17"	chr22	 27257597	 27260596	+	ENSG00000223704.1	ENST00000434868.1	RP1-90L6.2	RP1-90L6.2-001	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20"	NA	inter
CUST_492_PI429285431	1.3600404	A	0.91355383	A	1.36271755356923	0	lncRNA	483-1_{1..1666}	"transcript_id ""ENST00000427173.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427173.1"" | genecode_v17"	chr1	177669659	177671324	+	ENSG00000236720.1	ENST00000427173.1	RP11-63B19.1	RP11-63B19.1-001	NA	NA	NA	inter
LNCA_33_P3312233	0.90738547	A	2.451597	A	0.342883044461909	0	lncRNA	XR_132731	XR_132731	XR_132731	   647166	Hs.539702	LINC00371	long intergenic non-protein coding RNA 371	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC647166 (LOC647166), miscRNA [XR_132731]"	chr13:51658353-51658294	hs|13q14.3	Agilent_HUMAN_G3V2	XR_132731	XR_132731	chr13	 51658294	 51658353	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27608_PI429285431	0.9015978	A	0.9055889	A	0.997237403300514	0	lncRNA	29186-2_{3001..6000}	n324811|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141032|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141032|1.5746900|-0.2886780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324811|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141032|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141032|1.5746900|-0.2886780	chr21	 34228333	 34231332	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80"	NA	inter
CUST_9856_PI429285431	0.9298271	A	0.90278566	A	1.01892046368731	0	lncRNA	11376-1_{1..629}	lnc-ZNF507-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF507-4:7	chr19	 32539495	 32540123	+	lnc-ZNF507-4	lnc-ZNF507-4:7	XLOC_013038	linc-ZNF507-4	NA	NA	NA	inter
CUST_23574_PI429285431	0.89790744	A	1.0785286	A	0.882323025639973	0	lncRNA	25142-1_{1..579}	lnc-TIMM9-2:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMM9-2:15	chr14	 58735424	 58736002	-	lnc-TIMM9-2	lnc-TIMM9-2:15	ENSG00000257621.2	RP11-349A22.5	PSMA3	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90chr14:58725424-58738727"	NA	inner
CUST_22789_PI429285431	0.90290153	A	0.9102959	M	0.994887725665409	0	lncRNA	24369-1_{1..2362}	lnc-RPRM-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RPRM-3:1	chr2	155313878	155316239	-	lnc-RPRM-3	lnc-RPRM-3:1	ENSG00000224675.1	AC009227.2	GALNT13	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90chr2:155303878-155310489"	NA	inner
CUST_8546_PI429285431	7.000226	P	7.0183277	P	0.987531244884201	0	lncRNA	10105-1_{1..1616}	lnc-ADD1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ADD1-1:5	chr4	  2963081	  2964696	+	lnc-ADD1-1	lnc-ADD1-1:5	ENSG00000249673	RP11-520M5.5	GRK4	"hg19_refFlat_NOP14:range=chr4:2940558-29650465'pad=0,hg19_refFlat_NOP14:range=chr4:2940558-29650465'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr4:2965343-2973465"	NA	inner
CUST_30920_PI429285431	7.8383827	P	7.2141094	P	1.5414341939215	0	lncRNA	32708-1_{1..392}	n336971|BC105300|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338251|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338251|0.2004480|-0.2222908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336971|BC105300|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338251|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338251|0.2004480|-0.2222908	chr8	101300193	101300584	-	NA	NA	NA	NA	RNF19A	NA	chr8:101290193-101322327	inner
CUST_26292_PI429285431	0.8865053	A	0.88670677	A	0.999860361387911	0	lncRNA	27798-1_{1..480}	lnc-RP1-170O19.17.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP1-170O19.17.1-2:1	chr7	 27286580	 27287059	-	lnc-RP1-170O19.17.1-2	lnc-RP1-170O19.17.1-2:1	ENSG00000253405.1	EVX1-AS	EVX1	NA	chr7:27282164-27286192	inter
LNCA_21_P0009138	5.3217106	P	5.449415	P	0.915286685947439	0	lncRNA	TCONS_00025079	NA	NA	NA	NA	XLOC_012043	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012043), lincRNA [TCONS_00025079]"	chr16:86232557-86232498	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00025079	TCONS_00025079	chr16	 86232498	 86232557	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48337_PI429285431	5.1636496	P	5.3329773	P	0.889256980913677	0	lncRNA	52192-1_{1..971}	hg19_lincRNAsTranscripts_TCONS_l2_00001222 range=chr1:48459727-48462787 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001222 range=chr1:48459727-48462787 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 48459727	 48460697	-	NA	NA	NA	NA	LOC388630	NA	chr1:48449727-48462562	inner
CUST_12043_PI429285431	7.768465	P	8.081359	P	0.805025283554853	0	lncRNA	13628-1_{1..1434}	lnc-CHRD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHRD-1:1	chr3	184097406	184098839	+	lnc-CHRD-1	lnc-CHRD-1:1	XLOC_002948	linc-CHRD	THPO	NA	chr3:184089773-184095932	inter
CUST_50809_PI429285431	1.2415283	A	0.91688865	A	1.25235159270153	0	lncRNA	54460-1_{1..699}	hg19_lincRNAsTranscripts_TCONS_l2_00004515 range=chr11:49327439-49391958 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004515 range=chr11:49327439-49391958 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 49327439	 49328137	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20144_PI429285431	2.9232538	A	3.0392444	A	0.922748504879142	0	lncRNA	21789-1_{1..1577}	lnc-BAIAP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-BAIAP2-2:1	chr17	 79156765	 79158341	+	lnc-BAIAP2-2	lnc-BAIAP2-2:1	ENSG00000225180.2	AATK-AS1	AZI1	NA	chr17:79163393-79166964	inter
CUST_28687_PI429285431	5.0682917	P	5.256712	P	0.877566099243988	0	lncRNA	30385-1_{1..901}	n326073|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046729|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046729|-1.1972400|-0.2502141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326073|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046729|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046729|-1.1972400|-0.2502141	chr10	  8380865	  8381765	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36903_PI429285431	2.0876796	A	1.8874228	A	1.14890284172813	0	lncRNA	38063-1_{1..542}	n345376|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_925|NULL|-1.3413500|-0.3983731	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345376|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_925|NULL|-1.3413500|-0.3983731	chr19	 30528701	 30529242	-	NA	NA	NA	NA	NA	"hg19_refFlat_TAF9:range=chr5:68660770-686615645'pad=0,hg19_refFlat_TAF9:range=chr5:68660770-686615645'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50"	NA	inter
CUST_37362_PI429285431	3.24843	P	3.1643965	A	1.05997739624303	0	lncRNA	38466-1_{1..647}	n345810|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1359|NULL|-1.5077400|-0.1204600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345810|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1359|NULL|-1.5077400|-0.1204600	chr18	 55297590	 55298236	+	NA	NA	NA	NA	ATP8B1	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70chr18:55313658-55319277"	NA	inner
CUST_13025_PI429285431	0.908312	A	0.8945872	A	1.00955870176237	0	lncRNA	14653-1_{1..3000}	lnc-QRSL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-QRSL1-2:1	chr6	107164110	107167109	+	lnc-QRSL1-2	lnc-QRSL1-2:1	XLOC_005414	linc-C6orf203-1	NA	NA	NA	inter
LNCA_19_P00811430	0.89799696	A	0.8922057	A	1.00402226321527	0	lncRNA	TCONS_00023880	NA	NA	NA	NA	XLOC_011183	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011183), lincRNA [TCONS_00023880]"	chr15:25259816-25259875	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023880	TCONS_00023880	chr15	 25259816	 25259875	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21601_PI429285431	0.90055144	A	0.8993419	A	1.00083874078727	0	lncRNA	23214-1_{1..751}	lnc-ANKRD42-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD42-3:4	chr11	 83358916	 83359666	+	lnc-ANKRD42-3	lnc-ANKRD42-3:4	ENSG00000255311.1	RP11-160H12.2	DLG2	NA	chr11:83348916-83369086	inner
LNCA_21_P0008454	7.3663726	P	7.3423557	P	1.01678658405074	0	lncRNA	TCONS_00022778	NA	NA	NA	NA	XLOC_011063	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011063), lincRNA [TCONS_00022778]"	chr14:71648302-71648243	hs|14q24.2	Agilent_HUMAN_G3V2	TCONS_00022778	TCONS_00022778	chr14	 71648243	 71648302	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49010_PI429285431	3.985625	P	3.3991365	P	1.50158745255619	0	lncRNA	52838-4_{9001..9808}	hg19_lincRNAsTranscripts_TCONS_l2_00019116 range=chr3:197360474-197372879 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019116 range=chr3:197360474-197372879 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	197369474	197370281	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23536_PI429285431	0.89412576	A	1.1532199	A	0.835612431028829	0	lncRNA	25103-1_{1..1142}	lnc-YWHAZ-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-YWHAZ-1:1	chr8	101925475	101926616	-	lnc-YWHAZ-1	lnc-YWHAZ-1:1	ENSG00000260368.1	RP11-521I2.3	YWHAZ	NA	chr8:101930804-101936616	inter
CUST_3431_PI429285431	8.366398	P	8.442384	P	0.948693521275138	0	lncRNA	3402-1_{1..495}	"transcript_id ""ENST00000432148.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432148.1"" | genecode_v17"	chr9	 71158457	 71158951	-	ENSG00000234506.1	ENST00000432148.1	RP11-274B18.2	RP11-274B18.2-001	C9orf71	NA	chr9:71151496-71155783	inter
CUST_37910_PI429285431	14.444302	P	13.27876	P	2.24317472660481	0	lncRNA	38999-1_{1..353}	n346449|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1999|NULL|-1.2939300|-0.4318585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346449|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1999|NULL|-1.2939300|-0.4318585	chr3	 39400010	 39400362	+	NA	NA	NA	NA	SLC25A38	NA	chr3:39390010-39411550	inter
CUST_37659_PI429285431	3.3923533	P	4.07433	P	0.623310663728739	0	lncRNA	38752-1_{1..675}	n346141|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1691|NULL|-1.3475600|-0.1754021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346141|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1691|NULL|-1.3475600|-0.1754021	chr8	 41424098	 41424772	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49086_PI429285431	4.644323	P	4.5730987	P	1.05060787237977	0	lncRNA	52910-1_{1..620}	hg19_lincRNAsTranscripts_TCONS_l2_00021058 range=chr4:9167676-9168601 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021058 range=chr4:9167676-9168601 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  9167676	  9168295	-	NA	NA	NA	NA	LOC100287045	NA	chr4:9174899-9177893	inter
CUST_25224_PI429285431	4.450867	P	4.4692764	P	0.987320645309417	0	lncRNA	26755-1_{1..361}	lnc-ERAL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ERAL1-1:1	chr17	 27188115	 27188475	+	lnc-ERAL1-1	lnc-ERAL1-1:1	ENSG00000265079.1	MIR451B	ERAL1	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60chr17:27182043-27188072"	NA	inter
CUST_1116_PI429285431	0.90101504	A	0.9101458	A	0.993691025135354	0	lncRNA	1105-1_{1..987}	"transcript_id ""ENST00000601578.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601578.1"" | genecode_v17"	chr2	145780795	145781781	+	ENSG00000226674.3	ENST00000601578.1	AC074093.1	AC074093.1-016	NA	NA	NA	inter
CUST_26040_PI429285431	13.2083645	P	13.08231	P	1.09130510198674	0	lncRNA	27556-2_{3001..6000}	lnc-ZNF862-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:1	chr7	149495627	149498626	+	lnc-ZNF862-1	lnc-ZNF862-1:1	ENSG00000197558.7	SSPO	SSPO	NA	chr7:149482627-149503165	inner
CUST_24777_PI429285431	11.402317	P	11.744041	P	0.789097787623539	0	lncRNA	26320-1_{1..569}	lnc-GLIPR1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLIPR1-3:1	chr12	 76424691	 76425259	+	lnc-GLIPR1-3	lnc-GLIPR1-3:1	ENSG00000257453.1	RP11-290L1.3	PHLDA1	"hg19_refFlat_PHLDA1:range=chr12:76424316-764255215'pad=0,hg19_refFlat_PHLDA1:range=chr12:76424316-764255215'pad=0 3'pad=0 strand=- repeatMasking=none,-105.90chr12:76419227-76425556"	NA	inner
CUST_7412_PI429285431	2.270313	A	1.912206	A	1.28174298334429	0	lncRNA	9055-1_{1..715}	lnc-FAM55B-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM55B-4:3	chr11	115268301	115269015	+	lnc-FAM55B-4	lnc-FAM55B-4:3	ENSG00000256315	AP000462.1	CADM1	NA	chr11:115258301-115278337	inner
CUST_32423_PI429285431	0.9002327	A	0.8905834	A	1.00671080228734	0	lncRNA	34099-1_{1..2561}	n339018|BC040565|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1447|NULL|-1.2611800|-0.2395266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339018|BC040565|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1447|NULL|-1.2611800|-0.2395266	chr2	174062439	174064999	-	NA	NA	NA	NA	ZAK	"hg19_refFlat_ZAK:range=chr2:173955760-1741314785'pad=0,hg19_refFlat_ZAK:range=chr2:173955760-1741314785'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZAK:range=chr2:173955760-1740862585'pad=0,hg19_refFlat_ZAK:range=chr2:173955760-1740862585'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70chr2:174052439-174132737"	NA	inter
CUST_5205_PI429285431	0.90657765	A	1.0389372	A	0.912338086334962	0	lncRNA	5145-1_{1..592}	"transcript_id ""ENST00000569913.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569913.1"" | genecode_v17"	chr15	 62576389	 62576980	+	ENSG00000260957.1	ENST00000569913.1	RP11-299H22.7	RP11-299H22.7-001	NA	NA	NA	inter
CUST_15864_PI429285431	3.4717178	P	2.6926358	A	1.71603859440525	0	lncRNA	17553-1_{1..603}	lnc-JPH4-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JPH4-1:4	chr14	 24198787	 24199389	-	lnc-JPH4-1	lnc-JPH4-1:4	XLOC_010971	linc-JPH4-2	NA	NA	NA	inter
LNCA_21_P0013361	0.9044362	A	0.89756614	A	1.00477331888247	0	lncRNA	TCONS_l2_00027012	NA	NA	NA	NA	XLOC_l2_014077	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014077), lincRNA [TCONS_l2_00027012]"	chr7:156264770-156264711	hs|7q36.3	Agilent_HUMAN_G3V2	TCONS_l2_00027012	TCONS_l2_00027012	chr7	156264711	156264770	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7614_PI429285431	0.9213516	A	1.9822779	A	0.479324204872761	0	lncRNA	9249-1_{1..3000}	lnc-TGFBRAP1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TGFBRAP1-5:2	chr2	105488704	105491703	-	lnc-TGFBRAP1-5	lnc-TGFBRAP1-5:2	ENSG00000229743	AC018730.3	NA	NA	NA	inter
CUST_29785_PI429285431	7.288451	P	6.9809513	P	1.23756105309494	0	lncRNA	31548-1_{1..508}	n333486|BC029768|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091896|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091896|2.3596900|-0.0470933	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333486|BC029768|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091896|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091896|2.3596900|-0.0470933	chr19	 14584714	 14585221	-	NA	NA	NA	NA	PKN1	NA	chr19:14574714-14582679	inner
CUST_34355_PI429285431	2.5088053	A	2.4944785	A	1.00998005287199	0	lncRNA	35844-1_{1..3000}	n341225|AK124585|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3693|NULL|-1.0618800|-0.3093135	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341225|AK124585|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3693|NULL|-1.0618800|-0.3093135	chr7	 38829643	 38832642	-	NA	NA	NA	NA	VPS41	NA	chr7:38819643-38843785	inner
CUST_45985_PI429285431	2.2226737	A	1.3860357	A	1.78588353587093	0	lncRNA	50275-1_{1..2105}	"gi|380422401|ref|NR_046446.1| Homo sapiens C-type lectin domain family 2, member D pseudogene (LOC374443), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|380422401|ref|NR_046446.1| Homo sapiens C-type lectin domain family 2, member D pseudogene (LOC374443), transcript variant 4, non-coding RNA"	Chr12	  9800643	  9802747	+	374443	NR_046446.1	NA	NA	NA	NA	NA	inter
CUST_10699_PI429285431	2.2712724	A	2.2690077	A	1.00157100315435	0	lncRNA	12234-1_{1..525}	lnc-CNTNAP5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CNTNAP5-1:1	chr2	124203339	124203863	+	lnc-CNTNAP5-1	lnc-CNTNAP5-1:1	XLOC_001655	linc-CNTNAP5-1	NA	NA	NA	inter
CUST_46747_PI429285431	10.868475	P	10.191196	P	1.59912088169457	0	lncRNA	50897-1_{1..782}	"gi|296010813|ref|NR_033656.1| Homo sapiens syntaxin 8 (STX8), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|296010813|ref|NR_033656.1| Homo sapiens syntaxin 8 (STX8), transcript variant 2, non-coding RNA"	Chr17	  9153788	  9154569	-	9482	NR_033656.1	NA	NA	NA	NA	NA	inter
CUST_34992_PI429285431	2.090681	A	1.4027088	A	1.61101753830945	0	lncRNA	36405-1_{1..1594}	n341917|AY682081|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4398|NULL|9.4091000|-0.0902852	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341917|AY682081|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4398|NULL|9.4091000|-0.0902852	chr12	 52080206	 52081799	+	NA	NA	NA	NA	SCN8A	NA	chr12:52070206-52149732	inner
CUST_18730_PI429285431	6.172036	P	6.555348	P	0.766675509188956	0	lncRNA	20428-1_{1..502}	lnc-ZNF37A-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF37A-5:2	chr10	 39012283	 39012784	+	lnc-ZNF37A-5	lnc-ZNF37A-5:2	ENSG00000234541	RP11-453N3.2	NA	NA	NA	inter
LNCA_21_P0007190	0.9123337	A	0.9042739	A	1.00560226195089	0	lncRNA	ENST00000532947	NA	NA	NA	NA	XLOC_009094	NA	ENST00000532947	THC2650109	NA	"BROAD Institute lincRNA (XLOC_009094), lincRNA [TCONS_00019266]"	chr11:28548432-28548491	hs|11p14.1	Agilent_HUMAN_G3V2	ENST00000532947	ENST00000532947	chr11	 28548432	 28548491	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10174_PI429285431	0.9102868	A	1.3896021	A	0.717317980824275	0	lncRNA	11699-1_{1..1209}	lnc-PRDM4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRDM4-2:1	chr12	108232388	108233596	-	lnc-PRDM4-2	lnc-PRDM4-2:1	XLOC_010190	linc-PRDM4-3	NA	NA	NA	inter
CUST_39480_PI429285431	0.90928215	A	1.0912704	A	0.881487337133368	0	lncRNA	40426-1_{1..1569}	n387127|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010yuf.1||5.9864100|-0.0779111	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n387127|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010yuf.1||5.9864100|-0.0779111	chr2	 96455401	 96456969	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20971_PI429285431	1.6968759	A	1.9137015	A	0.860456640512359	0	lncRNA	22601-1_{1..2677}	lnc-PLEKHG4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLEKHG4-1:1	chr16	 67295011	 67297687	+	lnc-PLEKHG4-1	lnc-PLEKHG4-1:1	ENSG00000262691.1	CTC-277H1.7	SLC9A5	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90chr16:67285011-67306094"	NA	inner
CUST_42372_PI429285431	5.3838215	P	5.179692	P	1.15199104337353	0	lncRNA	45050-1_{1..76}	ENST00000365153 ncrna:snoRNA chromosome:GRCh37:7:136972434:136972509:1 gene:ENSG00000202023 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365153 ncrna:snoRNA chromosome:GRCh37:7:136972434:136972509:1 gene:ENSG00000202023 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	136972434	136972509	+	ENSG00000202023	ENST00000365153	NA	NA	PTN	NA	chr7:136962434-136982509	inner
LNCA_21_P0006645	0.91450876	A	0.90552163	A	1.00624884690879	0	lncRNA	ENST00000448835	NA	CR749724	NA	Hs.576825	XLOC_008371	NA	ENST00000448835	NA	NA	"BROAD Institute lincRNA (XLOC_008371), lincRNA [TCONS_00017778]"	chr10:6663795-6667308	hs|10p14	Agilent_HUMAN_G3V2	ENST00000448835	ENST00000448835	chr10	  6663795	  6667308	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43785_PI429285431	4.2341757	P	4.5312576	P	0.813896979841439	0	lncRNA	48516-1_{1..1372}	"gi|336176068|ref|NR_038430.1| Homo sapiens uncharacterized LOC100506054 (LOC100506054), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|336176068|ref|NR_038430.1| Homo sapiens uncharacterized LOC100506054 (LOC100506054), transcript variant 1, non-coding RNA"	Chr2	  3605977	  3607348	+	100506054	NR_038430.1	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20"	NA	inter
LNCA_33_P3326767	0.91450477	A	0.9053437	A	1.00637017364177	0	lncRNA	XR_110123	XR_110123	XR_110123	100129597	NA	LOC100129597	uncharacterized LOC100129597	NA	THC2667706	NA	"PREDICTED: Homo sapiens hypothetical LOC100129597 (LOC100129597), miscRNA [XR_110123]"	chr13:49141793-49141734	hs|13q14.2	Agilent_HUMAN_G3V2	XR_110123	XR_110123	chr13	 49141734	 49141793	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47860_PI429285431	3.4856467	P	4.1443276	P	0.633457221504434	0	lncRNA	51762-1_{1..2393}	"gi|410171185|ref|XR_171190.1| PREDICTED: Homo sapiens hepatocyte growth factor-like protein-like (LOC101060347), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171185|ref|XR_171190.1| PREDICTED: Homo sapiens hepatocyte growth factor-like protein-like (LOC101060347), misc_RNA"	NA	NA	NA	NA	NA	XR_171190.1	NA	NA	NA	NA	NA	Unknown
CUST_2142_PI429285431	0.8986893	A	0.9040242	A	0.996308957811188	0	lncRNA	2133-1_{1..554}	"transcript_id ""ENST00000511734.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511734.1"" | genecode_v17"	chr5	 38682172	 38682725	+	ENSG00000251189.1	ENST00000511734.1	CTD-2196P11.2	CTD-2196P11.2-001	NA	NA	NA	inter
CUST_6258_PI429285431	0.9051232	A	0.9038201	A	1.00090364813516	0	lncRNA	6183-1_{1..748}	"transcript_id ""ENST00000579278.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579278.1"" | genecode_v17"	chr18	 73144658	 73145405	-	ENSG00000266774.1	ENST00000579278.1	RP11-321M21.1	RP11-321M21.1-001	C18orf62	NA	chr18:73134658-73139589	inter
CUST_46177_PI429285431	3.1612985	P	3.4528465	P	0.817024926988365	0	lncRNA	50424-1_{1..2092}	"gi|337756632|ref|NR_038995.1| Homo sapiens long intergenic non-protein coding RNA 327 (LINC00327), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|337756632|ref|NR_038995.1| Homo sapiens long intergenic non-protein coding RNA 327 (LINC00327), non-coding RNA"	Chr13	 24043651	 24045742	+	100506697	NR_038995.1	NA	NA	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CEP63:range=chr3:134214163-1342937335'pad=0,hg19_refFlat_CEP63:range=chr3:134214163-1342937335'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60"	NA	inter
CUST_36142_PI429285431	3.533471	P	3.991237	P	0.728112862236935	0	lncRNA	37422-6_{15001..18000}	n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	chr8	128104803	128107802	-	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00"	NA	inter
LNCA_21_P0000940	4.743017	P	5.4736576	P	0.602636265796242	0	lncRNA	XR_109346	XR_109346	XR_109346	NA	Hs.586392	LOC100505909	uncharacterized LOC100505909	ENST00000522481	THC2786034	NA	"PREDICTED: Homo sapiens hypothetical LOC100505909 (LOC100505909), miscRNA [XR_109346]"	chr17:81168716-81168657	hs|17q25.3	Agilent_HUMAN_G3V2	XR_109346	XR_109346	chr17	 81168657	 81168716	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43941_PI429285431	7.9939785	P	7.6702633	P	1.25154936801151	0	lncRNA	48651-1_{1..529}	"gi|215272367|ref|NR_024531.1| Homo sapiens ribosomal protein L23a pseudogene 7 (RPL23AP7), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|215272367|ref|NR_024531.1| Homo sapiens ribosomal protein L23a pseudogene 7 (RPL23AP7), transcript variant 5, non-coding RNA"	Chr2	114379303	114379831	-	118433	NR_024531.1	NA	NA	NA	NA	NA	inter
CUST_33002_PI429285431	0.9001478	A	0.9008379	A	0.99952177351745	0	lncRNA	34617-1_{1..1600}	n339684|BC039437|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2129|NULL|-1.0755200|-0.3113024	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339684|BC039437|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2129|NULL|-1.0755200|-0.3113024	chr3	170185072	170186671	+	NA	NA	NA	NA	SLC7A14	"hg19_refFlat_SLC7A14:range=chr3:170184843-1702447255'pad=0,hg19_refFlat_SLC7A14:range=chr3:170184843-1702447255'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30chr3:170177342-170303863"	NA	inner
CUST_36104_PI429285431	1.0634607	A	0.8916336	A	1.12648421674006	0	lncRNA	37398-1_{1..1388}	n344683|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_232|NULL|-1.3164400|-0.3231205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344683|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_232|NULL|-1.3164400|-0.3231205	chr6	 32869344	 32870731	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32200_PI429285431	2.127006	A	0.92355233	A	2.3029030398834	0	lncRNA	33897-1_{1..2754}	n338777|BC034981|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1199|NULL|-1.0857400|-0.3133069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338777|BC034981|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1199|NULL|-1.0857400|-0.3133069	chr13	 76506533	 76509286	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18834_PI429285431	0.8919601	A	0.89730847	A	0.996299655624217	0	lncRNA	20528-1_{1..466}	lnc-NMNAT2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NMNAT2-2:3	chr1	183440818	183441283	-	lnc-NMNAT2-2	lnc-NMNAT2-2:3	ENSG00000232860	RP11-74N20.1	SMG7	NA	chr1:183441506-183450864	inter
CUST_20887_PI429285431	4.1004977	P	4.7818465	P	0.6235820044736	0	lncRNA	22519-1_{1..355}	lnc-PSMA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PSMA2-2:1	chr7	 43288782	 43289136	-	lnc-PSMA2-2	lnc-PSMA2-2:1	ENSG00000228680.1	AC004692.4	HECW1	NA	chr7:43278782-43298867	inner
CUST_10343_PI429285431	0.90885735	A	0.8955959	A	1.00923451411285	0	lncRNA	11872-1_{1..794}	lnc-SWT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SWT1-1:1	chr1	185343529	185344322	+	lnc-SWT1-1	lnc-SWT1-1:1	XLOC_000494	linc-HMCN1-2	NA	NA	NA	inter
CUST_27415_PI429285431	4.2939744	P	4.781652	P	0.713172213934728	0	lncRNA	28980-1_{1..489}	n324585|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039920|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039920|-1.3837700|-0.4138218	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324585|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039920|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039920|-1.3837700|-0.4138218	chr6	 14499440	 14499928	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50"	NA	inter
CUST_10508_PI429285431	6.5010457	P	6.6272125	P	0.916262703052279	0	lncRNA	12034-1_{1..713}	lnc-IRF2BPL-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRF2BPL-1:4	chr14	 77542448	 77543160	-	lnc-IRF2BPL-1	lnc-IRF2BPL-1:4	XLOC_011081	linc-C14orf4-2	NA	NA	NA	inter
CUST_10647_PI429285431	0.9088311	A	0.9047123	A	1.00285901381413	0	lncRNA	12179-1_{1..1991}	lnc-TTC27-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-TTC27-1:3	chr2	 33154006	 33155996	+	lnc-TTC27-1	lnc-TTC27-1:3	XLOC_001418	linc-LTBP1	NA	NA	NA	inter
CUST_3158_PI429285431	1.2178109	A	1.6167321	A	0.758425196738519	0	lncRNA	3137-1_{1..875}	"transcript_id ""ENST00000522106.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522106.1"" | genecode_v17"	chr8	 65713793	 65714667	-	ENSG00000254006.1	ENST00000522106.1	RP11-1D12.2	RP11-1D12.2-001	CYP7B1	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90chr8:65703793-65711348"	NA	inter
CUST_41120_PI429285431	6.029031	P	5.8651505	P	1.12029641497988	0	lncRNA	41884-1_{1..88}	ENST00000408484 ncrna:miRNA chromosome:GRCh37:19:2234061:2234148:-1 gene:ENSG00000221411 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408484 ncrna:miRNA chromosome:GRCh37:19:2234061:2234148:-1 gene:ENSG00000221411 gene_biotype:miRNA transcript_biotype:miRNA	chr19	  2234061	  2234148	-	ENSG00000221411	ENST00000408484	NA	NA	DOT1L	NA	chr19:2224061-2232577	inter
CUST_4756_PI429285431	0.9184976	A	0.9237711	A	0.996351360862449	0	lncRNA	4701-1_{1..777}	"transcript_id ""ENST00000550827.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550827.1"" | genecode_v17"	chr14	 29299450	 29300226	+	ENSG00000258038.1	ENST00000550827.1	CTD-2384A14.1	CTD-2384A14.1-004	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60"	NA	inter
CUST_8_PI429201921	7.220848	P	7.2044888	P	1.01140386728996	0	lncRNA	8-1_{1..659}	TC09002108.hg.1	 TCONS_00016651-XLOC_007469 // Rinn lincRNAs // linc-HIATL1-1 chr9:+:97108945-97109605 // chr9 // 100 // 100 // 0 // --- // 0///TCONS_00016652-XLOC_007469 // Rinn lincRNAs // linc-HIATL1-1 chr9:+:97108945-97109605 // chr9 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr9:+:97108945-97109605	NA	Affy_HUMAN_HTA2.0	TCONS_00016652-XLOC_007469	linc-HIATL1-1	chr9	 97108945	 97109605	+	NA	NA	NA	NA	ZNF608	NA	chr5:124033520-124056430	Unknown
CUST_50906_PI429285431	0.90190715	A	0.9039778	A	0.99856576429109	0	lncRNA	54548-1_{1..1225}	hg19_lincRNAsTranscripts_TCONS_l2_00006110 range=chr12:9523725-9534268 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006110 range=chr12:9523725-9534268 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  9523725	  9524949	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13415_PI429285431	0.9035202	A	1.5875149	A	0.622439404330111	0	lncRNA	15053-1_{1..367}	lnc-AC006372.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC006372.1-1:4	chr7	157308530	157308896	+	lnc-AC006372.1-1	lnc-AC006372.1-1:4	XLOC_006316	linc-WDR60-3	NA	NA	NA	inter
CUST_47453_PI429285431	0.9077992	A	0.9222787	A	0.990013772235852	0	lncRNA	51484-1_{1..1689}	"gi|397139784|ref|XR_109744.2| PREDICTED: Homo sapiens uncharacterized LOC284861 (LOC284861), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139784|ref|XR_109744.2| PREDICTED: Homo sapiens uncharacterized LOC284861 (LOC284861), misc_RNA"	NA	NA	NA	NA	NA	XR_109744.2	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007873	0.91558105	A	0.9252356	A	0.993330317616375	0	lncRNA	TCONS_00021301	NA	NA	NA	NA	XLOC_010054	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010054), lincRNA [TCONS_00021301]"	chr12:40807899-40807840	hs|12q12	Agilent_HUMAN_G3V2	TCONS_00021301	TCONS_00021301	chr12	 40807840	 40807899	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36022_PI429285431	0.9187956	A	0.9279248	A	0.993692099623582	0	lncRNA	37354-1_{1..3000}	n344634|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_182|NULL|-1.3132300|-0.3175841	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344634|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_182|NULL|-1.3132300|-0.3175841	chr12	 66000376	 66003375	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.42;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-21.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20"	NA	inter
CUST_35444_PI429285431	0.91202635	A	1.0508423	A	0.908264281000744	0	lncRNA	36851-1_{1..450}	n342511|AX750575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5006|NULL|-0.8923130|-0.2805875	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342511|AX750575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5006|NULL|-0.8923130|-0.2805875	chr4	 15969850	 15970299	+	NA	NA	NA	NA	PROM1	NA	chr4:15969849-15980275	inner
CUST_35388_PI429285431	1.7095716	A	1.9189658	A	0.8649003341231	0	lncRNA	36796-2_{3001..3449}	n342437|AK058000|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4930|NULL|-1.1787800|-0.3412964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342437|AK058000|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4930|NULL|-1.1787800|-0.3412964	chr2	105953483	105953931	-	NA	NA	NA	NA	TGFBRAP1	"hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20chr2:105940483-105946148"	NA	inter
CUST_4167_PI429285431	0.8959714	A	0.9024115	A	0.995546011401197	0	lncRNA	4125-1_{1..412}	"transcript_id ""ENST00000544086.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544086.1"" | genecode_v17"	chr12	 12638287	 12638698	+	ENSG00000255670.1	ENST00000544086.1	RP11-253I19.3	RP11-253I19.3-001	DUSP16	NA	chr12:12628287-12654515	inner
CUST_28006_PI429285431	9.567749	P	9.061216	P	1.42063211051001	0	lncRNA	29616-1_{1..1008}	n325262|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326403|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326403|-1.1445900|-0.4433164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325262|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326403|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326403|-1.1445900|-0.4433164	chr2	 67642702	 67643709	+	NA	NA	NA	NA	ETAA1	NA	chr2:67632702-67637533	inter
LNCA_21_P0006201	0.9167186	A	0.9214895	A	0.99669852600637	0	lncRNA	TCONS_00016117	NA	NA	NA	NA	XLOC_007504	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007504), lincRNA [TCONS_00016117]"	chr9:109994112-110017722	hs|9q31.2	Agilent_HUMAN_G3V2	TCONS_00016117	TCONS_00016117	chr9	109994112	110017722	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48996_PI429285431	1.3984287	A	0.9088004	A	1.40408307722731	0	lncRNA	52828-1_{1..2223}	hg19_lincRNAsTranscripts_TCONS_l2_00019713 range=chr3:197319981-197354746 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019713 range=chr3:197319981-197354746 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	197319981	197322203	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_967_PI429285431	3.2474327	A	3.398175	A	0.900786867657345	0	lncRNA	956-1_{1..592}	"transcript_id ""ENST00000480208.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000480208.1"" | genecode_v17"	chr2	 98086678	 98087269	+	ENSG00000241481.2	ENST00000480208.1	AC159540.2	AC159540.2-001	NA	NA	NA	inter
LNCA_21_P0014277	0.91518223	A	0.91764104	A	0.998297134304823	0	lncRNA	ENST00000553105	XR_109095	XR_109095	NA	Hs.298851	LOC100506606	NA	ENST00000553105	THC2607057	NA	"PREDICTED: Homo sapiens hypothetical LOC100506606 (LOC100506606), miscRNA [XR_109095]"	chr12:29433444-29433385	hs|12p11.22	Agilent_HUMAN_G3V2	ENST00000553105	ENST00000553105	chr12	 29433385	 29433444	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2886_PI429285431	0.8947329	A	0.9048221	A	0.993031095688908	0	lncRNA	2867-1_{1..202}	"transcript_id ""ENST00000456952.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456952.1"" | genecode_v17"	chr7	 91010093	 91010294	-	ENSG00000235450.1	ENST00000456952.1	RP11-142A5.1	RP11-142A5.1-001	NA	NA	NA	inter
CUST_10934_PI429285431	0.90881634	A	0.91129553	A	0.998283032120148	0	lncRNA	12475-1_{1..376}	lnc-CCDC59-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC59-1:1	chr12	 82537256	 82537631	-	lnc-CCDC59-1	lnc-CCDC59-1:1	XLOC_010140	linc-PPFIA2	NA	NA	NA	inter
CUST_43813_PI429285431	1.1343504	A	1.5983187	A	0.7249893462854	0	lncRNA	48538-1_{1..711}	"gi|397138949|ref|XR_109960.2| PREDICTED: Homo sapiens uncharacterized LOC100131510 (LOC100131510), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138949|ref|XR_109960.2| PREDICTED: Homo sapiens uncharacterized LOC100131510 (LOC100131510), misc_RNA"	NA	NA	NA	NA	NA	XR_109960.2	NA	NA	NA	NA	NA	Unknown
CUST_40257_PI429285431	6.174822	P	6.549917	P	0.771054637869165	0	lncRNA	41069-1_{1..3000}	n408184|NR_028326|lncRNA|Homosapiens||RefGeneNoncode|NR_028326||4.2070600|-0.0893089	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408184|NR_028326|lncRNA|Homosapiens||RefGeneNoncode|NR_028326||4.2070600|-0.0893089	chr11	   126986	   129985	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15247_PI429285431	1.2207506	A	1.8840601	A	0.631428156707735	0	lncRNA	16918-1_{1..1181}	lnc-DZIP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DZIP1-1:1	chr13	 96328106	 96329286	-	lnc-DZIP1-1	lnc-DZIP1-1:1	XLOC_010698	linc-DZIP1	DNAJC3	NA	chr13:96329393-96339209	inter
CUST_21235_PI429285431	8.065531	P	8.010723	P	1.03872085670347	0	lncRNA	22861-1_{1..388}	lnc-PLAT-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLAT-3:6	chr8	 42120847	 42121234	-	lnc-PLAT-3	lnc-PLAT-3:6	ENSG00000253408.1	RP11-231D20.2	IKBKB	NA	chr8:42128820-42130924	inter
CUST_42422_PI429285431	5.2623467	P	5.4870954	P	0.855744072952542	0	lncRNA	45136-1_{1..91}	ENST00000408454 ncrna:snoRNA chromosome:GRCh37:19:51302289:51302379:-1 gene:ENSG00000221381 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408454 ncrna:snoRNA chromosome:GRCh37:19:51302289:51302379:-1 gene:ENSG00000221381 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	 51302289	 51302379	-	ENSG00000221381	ENST00000408454	NA	NA	ACPT	NA	chr19:51293672-51298481	inter
CUST_29406_PI429285431	8.139857	P	8.523682	P	0.766402939722188	0	lncRNA	31160-1_{1..513}	n332768|AF029110|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062954|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062954|2.0483500|-0.0359668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332768|AF029110|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062954|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062954|2.0483500|-0.0359668	chr19	  3750928	  3751440	-	NA	NA	NA	NA	APBA3	NA	chr19:3750771-3761533	inner
CUST_41780_PI429285431	0.91152424	A	0.9148044	A	0.997728949091437	0	lncRNA	43353-1_{1..84}	ENST00000582722 ncrna:miRNA chromosome:GRCh37:19:20988317:20988400:1 gene:ENSG00000266156 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582722 ncrna:miRNA chromosome:GRCh37:19:20988317:20988400:1 gene:ENSG00000266156 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 20988317	 20988400	+	ENSG00000266156	ENST00000582722	NA	NA	NA	NA	NA	inter
CUST_9743_PI429285431	0.9001527	A	0.9011015	A	0.999342558164737	0	lncRNA	11260-1_{1..1390}	lnc-NR1I2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR1I2-1:4	chr3	119823623	119825012	+	lnc-NR1I2-1	lnc-NR1I2-1:4	XLOC_002779	linc-NDUFB4-5	NA	"hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.50;hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0,hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90"	NA	inter
CUST_26437_PI429285431	2.9853227	A	1.5011247	A	2.79761609275261	0	lncRNA	27944-1_{1..1216}	lnc-DHRS7B-5:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHRS7B-5:8	chr17	 20832744	 20833959	+	lnc-DHRS7B-5	lnc-DHRS7B-5:8	ENSG00000233098.3	RP11-344E13.3	NA	NA	NA	inter
CUST_3042_PI429285431	0.9002663	A	0.9330715	A	0.977517746903225	0	lncRNA	3021-1_{1..715}	"transcript_id ""ENST00000518590.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518590.1"" | genecode_v17"	chr8	 23350522	 23351236	-	ENSG00000253986.1	ENST00000518590.1	CTC-756D1.3	CTC-756D1.3-001	NA	NA	NA	inter
CUST_46536_PI429285431	9.907107	P	10.526698	P	0.650855417254944	0	lncRNA	50724-2_{3001..4467}	"gi|345842457|ref|NR_033787.2| Homo sapiens DNM1 pseudogene 41 (DNM1P41), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|345842457|ref|NR_033787.2| Homo sapiens DNM1 pseudogene 41 (DNM1P41), non-coding RNA"	Chr15	 84838299	 84839765	-	440299	NR_033787.2	NA	NA	NA	NA	NA	inter
CUST_27641_PI429285431	1.0384866	A	0.8862828	A	1.11126569873356	0	lncRNA	29219-1_{1..1380}	n324847|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171188|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171188|-1.0866100|-0.3536760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324847|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171188|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171188|-1.0866100|-0.3536760	chr21	 25680003	 25681382	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34376_PI429285431	2.2789116	A	2.0237408	A	1.19347702986282	0	lncRNA	35862-1_{1..1975}	n341245|AK001279|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3713|NULL|-0.9910420|-0.3272744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341245|AK001279|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3713|NULL|-0.9910420|-0.3272744	chr7	 47994961	 47996935	-	NA	NA	NA	NA	PKD1L1	NA	chr7:47984961-47988071	inter
CUST_19637_PI429285431	6.638665	P	6.411137	P	1.17082706436503	0	lncRNA	21293-1_{1..893}	lnc-SUFU-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SUFU-1:6	chr10	104230422	104231314	+	lnc-SUFU-1	lnc-SUFU-1:6	ENSG00000243628.1	RP11-18I14.7	ACTR1A	NA	chr10:104238986-104240846	inner
CUST_28749_PI429285431	0.8862828	A	1.2341747	A	0.785731388694334	0	lncRNA	30452-1_{1..432}	n326146|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096175|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096175|-1.2888000|-0.3378988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326146|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096175|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096175|-1.2888000|-0.3378988	chr1	241308781	241309212	-	NA	NA	NA	NA	RGS7	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90chr1:241298781-241322050"	NA	inner
CUST_42885_PI429285431	1.2192142	A	1.6468747	A	0.743466426729333	0	lncRNA	45968-1_{1..132}	ENST00000516481 ncrna:snoRNA chromosome:GRCh37:1:237718340:237718471:-1 gene:ENSG00000252290 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516481 ncrna:snoRNA chromosome:GRCh37:1:237718340:237718471:-1 gene:ENSG00000252290 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	237718340	237718471	-	ENSG00000252290	ENST00000516481	NA	NA	RYR2	NA	chr1:237708340-237728471	inner
CUST_15908_PI429285431	4.155084	P	4.2393193	P	0.943284390992862	0	lncRNA	17602-1_{1..1171}	lnc-IGSF3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGSF3-1:1	chr1	117348227	117349397	-	lnc-IGSF3-1	lnc-IGSF3-1:1	XLOC_000978	linc-IGSF3	NA	NA	NA	inter
CUST_10651_PI429285431	1.7667078	A	1.2348511	A	1.44578868012843	0	lncRNA	12183-1_{1..1311}	lnc-ZNF423-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF423-1:2	chr16	 49487173	 49488483	-	lnc-ZNF423-1	lnc-ZNF423-1:2	XLOC_011929	linc-CBLN1	NA	NA	NA	inter
CUST_27796_PI429285431	5.0439963	P	5.3421736	P	0.813279244041601	0	lncRNA	29381-1_{1..503}	n325023|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078371|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078371|-1.3119600|-0.3095739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325023|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078371|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078371|-1.3119600|-0.3095739	chr20	 24226220	 24226722	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26285_PI429285431	6.7515836	P	6.489188	P	1.19946877386341	0	lncRNA	27791-1_{1..392}	lnc-TRIM41-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM41-3:2	chr5	180621234	180621625	+	lnc-TRIM41-3	lnc-TRIM41-3:2	ENSG00000250222.1	CTC-338M12.5	TRIM7	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-62.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60chr5:180620924-180631428"	NA	inner
LNCA_21_P0011164	4.2217164	P	4.364339	P	0.905870922193446	0	lncRNA	TCONS_l2_00007025	NA	NA	NA	NA	XLOC_l2_003868	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003868), lincRNA [TCONS_l2_00007025]"	chr13:114063742-114063801	hs|13q34	Agilent_HUMAN_G3V2	TCONS_l2_00007025	TCONS_l2_00007025	chr13	114063742	114063801	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35198_PI429285431	0.90379757	A	0.90555805	A	0.998780472480387	0	lncRNA	36599-1_{1..557}	n342182|AF086258|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4670|NULL|-1.1262400|-0.2664512	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n342182|AF086258|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4670|NULL|-1.1262400|-0.2664512	chr6	169575398	169575954	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8950_PI429285431	3.08676	P	3.5088506	P	0.746342320524945	0	lncRNA	10483-2_{3001..4740}	lnc-ORMDL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ORMDL1-1:1	chr2	190733436	190735175	-	lnc-ORMDL1-1	lnc-ORMDL1-1:1	ENSG00000246348	ENST00000500441	PMS1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PMS1:range=chr2:190656536-1907421625'pad=0,hg19_refFlat_PMS1:range=chr2:190656536-1907421625'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.31;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70chr2:190720436-190742355"	NA	inner
CUST_5932_PI429285431	1.1154915	A	0.88289475	A	1.17494787095809	0	lncRNA	5861-1_{1..889}	"transcript_id ""ENST00000577545.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577545.1"" | genecode_v17"	chr17	 62073830	 62074718	-	ENSG00000264954.1	ENST00000577545.1	RP11-214C8.2	RP11-214C8.2-002	C17orf72	NA	chr17:62075711-62081645	inner
CUST_10406_PI429285431	1.4867519	A	1.7686244	A	0.822522756990027	0	lncRNA	11933-1_{1..270}	lnc-AHNAK-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AHNAK-3:1	chr11	 62169731	 62170000	-	lnc-AHNAK-3	lnc-AHNAK-3:1	XLOC_009456	linc-SCGB1D4-1	ASRGL1	NA	chr11:62159731-62160887	inter
CUST_29619_PI429285431	8.885412	P	9.06477	P	0.883095886968247	0	lncRNA	31380-1_{1..248}	n333178|AF424049|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079420|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079420|-1.1433100|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333178|AF424049|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079420|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079420|-1.1433100|-1.0000000	chr4	154605404	154605651	+	NA	NA	NA	NA	TLR2	NA	chr4:154605441-154619209	inner
CUST_22824_PI429285431	2.2660565	A	2.737553	A	0.721216095945802	0	lncRNA	24404-1_{1..533}	lnc-STOML1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STOML1-1:10	chr15	 74218581	 74219113	-	lnc-STOML1-1	lnc-STOML1-1:10	ENSG00000261801.1	RP11-941F15.1	LOXL1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr15:74218789-74228683"	NA	inter
CUST_24415_PI429285431	1.2784995	A	1.6677408	A	0.763531032836935	0	lncRNA	25968-1_{1..481}	lnc-DHRS7B-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHRS7B-5:2	chr17	 20897403	 20897883	+	lnc-DHRS7B-5	lnc-DHRS7B-5:2	ENSG00000233098.3	RP11-344E13.3	USP22	NA	chr17:20902906-20907455	inter
CUST_5147_PI429285431	0.8993101	A	0.9142805	A	0.989676961564053	0	lncRNA	5087-1_{1..750}	"transcript_id ""ENST00000561259.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561259.1"" | genecode_v17"	chr15	 37173219	 37173968	-	ENSG00000259280.1	ENST00000561259.1	RP11-122D10.1	RP11-122D10.1-001	MEIS2	NA	chr15:37183222-37189236	inter
CUST_40303_PI429285431	5.1514974	P	3.855705	P	2.45511805741661	0	lncRNA	41106-1_{1..2155}	n408309|NR_028597|lncRNA|Homosapiens||RefGeneNoncode|NR_028597||1.8850800|-0.2570420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408309|NR_028597|lncRNA|Homosapiens||RefGeneNoncode|NR_028597||1.8850800|-0.2570420	chrX	138528977	138531131	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008477	5.8243647	P	5.5262785	P	1.22951232754484	0	lncRNA	TCONS_00022840	NA	NA	NA	NA	XLOC_011106	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011106), lincRNA [TCONS_00022840]"	chr14:94453148-94453089	hs|14q32.12	Agilent_HUMAN_G3V2	TCONS_00022840	TCONS_00022840	chr14	 94453089	 94453148	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14558_PI429285431	3.6349516	P	4.1969523	P	0.677362160084434	0	lncRNA	16227-1_{1..2690}	lnc-TTC7B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC7B-4:1	chr14	 90921441	 90924130	-	lnc-TTC7B-4	lnc-TTC7B-4:1	XLOC_011102	linc-C14orf102-2	NA	NA	NA	inter
CUST_24574_PI429285431	1.0792884	A	1.6255078	A	0.684812338205793	0	lncRNA	26122-1_{1..768}	lnc-TM2D1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TM2D1-2:2	chr1	 61436220	 61436987	-	lnc-TM2D1-2	lnc-TM2D1-2:2	ENSG00000237928.1	RP4-668G5.1	NA	NA	NA	inter
CUST_22108_PI429285431	1.3779722	A	0.9193791	A	1.37420105906118	0	lncRNA	23713-1_{1..449}	lnc-UBASH3A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBASH3A-1:2	chr21	 43917343	 43917791	+	lnc-UBASH3A-1	lnc-UBASH3A-1:2	ENSG00000239930.1	AP001625.4	RSPH1	NA	chr21:43907343-43916401	inter
CUST_49571_PI429285431	2.9806092	A	2.390797	A	1.50505081761791	0	lncRNA	53361-1_{1..245}	hg19_lincRNAsTranscripts_TCONS_l2_00024430 range=chr6:134758813-134785916 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024430 range=chr6:134758813-134785916 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	134758813	134759057	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48412_PI429285431	1.5906092	A	2.0962358	A	0.704354391685041	0	lncRNA	52265-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00001503 range=chr1:146565935-146582596 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001503 range=chr1:146565935-146582596 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	146565935	146568934	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20"	NA	inter
CUST_35616_PI429285431	7.3427315	P	5.9068003	P	2.705567434501	0	lncRNA	37029-1_{1..2957}	n342755|AL833658|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5258|NULL|-1.0342200|-0.2754013	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342755|AL833658|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5258|NULL|-1.0342200|-0.2754013	chr6	 32793191	 32796147	-	NA	NA	NA	NA	TAP2	NA	chr6:32789610-32806122	inner
CUST_1880_PI429285431	1.84465	A	0.9749143	A	1.82732810547691	0	lncRNA	1870-1_{1..203}	"transcript_id ""ENST00000509360.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509360.1"" | genecode_v17"	chr4	129520594	129520796	-	ENSG00000248802.1	ENST00000509360.1	RP11-184M15.2	RP11-184M15.2-001	NA	NA	NA	inter
CUST_50140_PI429285431	2.8142242	A	3.3471928	P	0.691131145446588	0	lncRNA	53866-1_{1..1084}	hg19_lincRNAsTranscripts_TCONS_l2_00028590 range=chr9:72586-87943 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028590 range=chr9:72586-87943 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	    72586	    73669	+	NA	NA	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20"	NA	inter
CUST_41848_PI429285431	5.3673368	P	5.592203	P	0.855674379891154	0	lncRNA	43493-1_{1..103}	ENST00000385258 ncrna:miRNA chromosome:GRCh37:14:101521008:101521110:1 gene:ENSG00000207993 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385258 ncrna:miRNA chromosome:GRCh37:14:101521008:101521110:1 gene:ENSG00000207993 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101521008	101521110	+	ENSG00000207993	ENST00000385258	NA	NA	NA	NA	NA	inter
CUST_19952_PI429285431	1.0803063	A	0.8953659	A	1.13677001050988	0	lncRNA	21607-1_{1..260}	lnc-MAP1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP1A-1:1	chr15	 43896982	 43897241	+	lnc-MAP1A-1	lnc-MAP1A-1:1	ENSG00000240430.1	AC011330.12	STRC	"hg19_refFlat_STRC:range=chr15:43891870-439109205'pad=0,hg19_refFlat_STRC:range=chr15:43891870-439109205'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30chr15:43891761-43907099"	NA	inner
LNCA_21_P0000949	12.471509	P	13.172116	P	0.615313265091194	0	lncRNA	ENST00000453135	NA	BC039491	NA	Hs.568616	XLOC_000053	NA	ENST00000453135	THC2507628	NA	"BROAD Institute lincRNA (XLOC_000053), lincRNA [TCONS_00000153]"	chr1:11672885-11672944	hs|1p36.22	Agilent_HUMAN_G3V2	ENST00000453135	ENST00000453135	chr1	 11672885	 11672944	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42992_PI429285431	0.8914964	A	0.8881804	A	1.00230111957178	0	lncRNA	46151-1_{1..75}	ENST00000516545 ncrna:snoRNA chromosome:GRCh37:1:172317283:172317357:1 gene:ENSG00000252354 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516545 ncrna:snoRNA chromosome:GRCh37:1:172317283:172317357:1 gene:ENSG00000252354 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	172317283	172317357	+	ENSG00000252354	ENST00000516545	NA	NA	DNM3	NA	chr1:172307283-172327357	inner
CUST_51151_PI429285431	3.0047567	P	3.2306187	P	0.855083966447783	0	lncRNA	54773-2_{3001..5826}	hg19_lincRNAsTranscripts_TCONS_l2_00008349 range=chr14:19935905-19974840 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008349 range=chr14:19935905-19974840 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr14	 19938905	 19941730	-	NA	NA	NA	NA	POTEM	NA	chr14:19983954-19984840	inter
CUST_31786_PI429285431	0.9074513	A	1.3770597	A	0.722160591857282	0	lncRNA	33525-1_{1..1454}	n338327|AK021423|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|721|NULL|-1.1665400|-0.2980552	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338327|AK021423|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|721|NULL|-1.1665400|-0.2980552	chr14	 60567051	 60568504	-	NA	NA	NA	NA	C14orf135	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr14:60558629-60578435"	NA	inner
CUST_2155_PI429285431	7.539921	P	7.478811	P	1.04326813571778	0	lncRNA	2146-1_{1..225}	"transcript_id ""ENST00000513880.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513880.2"" | genecode_v17"	chr5	 50265051	 50265275	-	ENSG00000251573.2	ENST00000513880.2	CTD-2089N3.2	CTD-2089N3.2-001	NA	NA	NA	inter
CUST_24623_PI429285431	1.5629948	A	2.1678202	A	0.657550954403693	0	lncRNA	26172-1_{1..552}	lnc-NUDT15-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUDT15-2:1	chr13	 48576571	 48577122	+	lnc-NUDT15-2	lnc-NUDT15-2:1	ENSG00000227848.1	SUCLA2-AS1	SUCLA2	NA	chr13:48566571-48575462	inter
CUST_26669_PI429285431	2.9056172	A	1.85549	A	2.07071241087179	0	lncRNA	28167-3_{6001..9000}	lnc-CEMP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CEMP1-1:1	chr16	  2621357	  2624356	-	lnc-CEMP1-1	lnc-CEMP1-1:1	ENSG00000261613.1	RP11-20I23.8	PDPK1	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-59.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_PDPK1:range=chr16:2588114-26476735'pad=0,hg19_refFlat_PDPK1:range=chr16:2588114-26476735'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.80;hg19_refFlat_PDPK1:range=chr16:2588114-26477685'pad=0,hg19_refFlat_PDPK1:range=chr16:2588114-26477685'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.11;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80chr16:2605357-2626295"	NA	inner
CUST_24528_PI429285431	4.4139147	P	4.297057	P	1.08437044685842	0	lncRNA	26079-1_{1..565}	lnc-KCTD6-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCTD6-4:2	chr3	 58956084	 58956648	+	lnc-KCTD6-4	lnc-KCTD6-4:2	ENSG00000242428.1	RP11-147N17.1	C3orf67	NA	chr3:58946084-58966454	inner
CUST_27334_PI429285431	1.5980792	A	1.5499747	A	1.03390562333198	0	lncRNA	28894-1_{1..1454}	n324489|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041090|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041090|-1.3224400|-0.3769554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324489|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041090|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041090|-1.3224400|-0.3769554	chr6	 64574687	 64576140	+	NA	NA	NA	NA	EYS	NA	chr6:64564687-64600494	inner
CUST_44167_PI429285431	12.387277	P	12.546883	P	0.89526953564526	0	lncRNA	48826-1_{1..1090}	"gi|193788630|ref|NR_024012.1| Homo sapiens testis expressed 264 (TEX264), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|193788630|ref|NR_024012.1| Homo sapiens testis expressed 264 (TEX264), transcript variant 3, non-coding RNA"	Chr3	 51705191	 51706280	+	51368	NR_024012.2	NA	NA	NA	NA	NA	inter
CUST_10163_PI429285431	0.9014439	A	0.90095985	A	1.00033557418517	0	lncRNA	11688-1_{1..1588}	lnc-CMPK2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMPK2-5:1	chr2	  6774727	  6776314	-	lnc-CMPK2-5	lnc-CMPK2-5:1	XLOC_001963	linc-RNASEH1-9	NA	NA	NA	inter
CUST_37786_PI429285431	0.90552163	A	0.8990117	A	1.00452253555966	0	lncRNA	38882-4_{9001..9585}	n346296|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1846|NULL|-1.2991100|-0.3277946	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n346296|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1846|NULL|-1.2991100|-0.3277946	chr5	 90606137	 90606721	-	NA	NA	NA	NA	NA	"hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.61;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_34352_PI429285431	1.0737257	A	1.6539044	A	0.668880921058026	0	lncRNA	35842-1_{1..3000}	n341222|AK126467|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3690|NULL|-1.1821400|-0.3540762	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341222|AK126467|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3690|NULL|-1.1821400|-0.3540762	chr7	 31823140	 31826139	-	NA	NA	NA	NA	PDE1C	NA	chr7:31813140-31837480	inner
CUST_27595_PI429285431	0.9126191	A	1.8391807	A	0.526110737595012	0	lncRNA	29174-1_{1..2336}	n324798|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331385|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331385|0.1487460|-0.3045744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324798|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331385|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331385|0.1487460|-0.3045744	chr21	 36399048	 36401383	+	NA	NA	NA	NA	RUNX1	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.09;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70chr21:36389048-36413858"	NA	inner
CUST_50730_PI429285431	0.89517725	A	1.2372915	A	0.788884364996493	0	lncRNA	54398-1_{1..1016}	hg19_lincRNAsTranscripts_TCONS_l2_00003281 range=chr10:120116475-120124722 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003281 range=chr10:120116475-120124722 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	120116475	120117490	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4816_PI429285431	2.0610473	A	0.9171966	A	2.20970028279212	0	lncRNA	4760-1_{1..502}	"transcript_id ""ENST00000555257.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555257.1"" | genecode_v17"	chr14	 50915525	 50916026	+	ENSG00000259113.1	ENST00000555257.1	RP11-406H23.2	RP11-406H23.2-001	MAP4K5	"hg19_refFlat_MAP4K5:range=chr14:50886737-509987675'pad=0,hg19_refFlat_MAP4K5:range=chr14:50886737-509987675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr14:50905525-50933460"	NA	inner
CUST_2203_PI429285431	0.89161956	A	0.89761573	A	0.995852396833786	0	lncRNA	2195-1_{1..389}	"transcript_id ""ENST00000507890.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507890.1"" | genecode_v17"	chr5	 73602235	 73602623	-	ENSG00000248942.1	ENST00000507890.1	CTD-2275D24.4	CTD-2275D24.4-001	NA	NA	NA	inter
CUST_35678_PI429285431	5.6703176	P	4.011485	P	3.15760913919518	0	lncRNA	37098-1_{1..504}	n342839|AY072873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5342|NULL|2.1872000|-0.0865269	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342839|AY072873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5342|NULL|2.1872000|-0.0865269	chr8	 38586007	 38586510	+	NA	NA	NA	NA	TACC1	NA	chr8:38585704-38698695	inner
CUST_9069_PI429285431	3.6778963	P	3.4361918	P	1.18238879266508	0	lncRNA	10592-1_{1..1799}	lnc-UBL5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBL5-2:2	chr19	  9744136	  9745934	+	lnc-UBL5-2	lnc-UBL5-2:2	ENSG00000245884	AC008759.1	LOC284385	NA	chr19:9734136-9745538	inner
CUST_12137_PI429285431	4.027335	P	3.8426485	P	1.1365699678804	0	lncRNA	13734-1_{1..379}	lnc-AGPAT2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AGPAT2-2:2	chr9	139510255	139510633	-	lnc-AGPAT2-2	lnc-AGPAT2-2:2	XLOC_007896	linc-NOTCH1-1	NA	NA	NA	inter
CUST_8931_PI429285431	0.91418356	A	0.90528464	A	1.00618732420664	0	lncRNA	10466-1_{1..1718}	lnc-C16orf95-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C16orf95-1:2	chr16	 87325290	 87327007	-	lnc-C16orf95-1	lnc-C16orf95-1:2	ENSG00000250435	ENSG00000261697.1	NA	NA	NA	inter
LNCA_21_P0007076	0.91171944	A	0.9015361	A	1.00708352371464	0	lncRNA	TCONS_00018815	NA	NA	NA	NA	XLOC_008609	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008609), lincRNA [TCONS_00018815]"	chr10:110733894-110734872	hs|10q25.1	Agilent_HUMAN_G3V2	TCONS_00018815	TCONS_00018815	chr10	110733894	110734872	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2640_PI429285431	0.90080136	A	2.229202	A	0.398209449032566	0	lncRNA	2627-1_{1..531}	"transcript_id ""ENST00000416481.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416481.1"" | genecode_v17"	chr6	135950543	135951073	-	ENSG00000233534.1	ENST00000416481.1	RP1-38C16.2	RP1-38C16.2-001	NA	NA	NA	inter
CUST_36382_PI429285431	2.1779056	A	2.3508854	A	0.887008724582655	0	lncRNA	37600-2_{3001..3286}	n344899|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_448|NULL|-1.5039900|-0.2521080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344899|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_448|NULL|-1.5039900|-0.2521080	chr6	 41078284	 41078569	+	NA	NA	NA	NA	NFYA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80chr6:41065284-41070146"	NA	inter
CUST_12614_PI429285431	1.1469538	A	1.3365012	A	0.876880771814508	0	lncRNA	14228-1_{1..568}	lnc-ESM1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ESM1-1:2	chr5	 54318456	 54319023	-	lnc-ESM1-1	lnc-ESM1-1:2	XLOC_004823	linc-ESM1	GZMK	NA	chr5:54320107-54328794	inter
CUST_12972_PI429285431	0.905025	A	0.91864866	A	0.990601245492161	0	lncRNA	14598-1_{1..1837}	lnc-RUNX1T1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RUNX1T1-4:2	chr8	 93512966	 93514802	-	lnc-RUNX1T1-4	lnc-RUNX1T1-4:2	XLOC_007155	linc-RUNX1T1-2	NA	NA	NA	inter
CUST_3485_PI429285431	3.5313325	P	3.3850348	P	1.10672570228686	0	lncRNA	3456-1_{1..391}	"transcript_id ""ENST00000443771.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443771.1"" | genecode_v17"	chr9	 96619365	 96619755	+	ENSG00000231990.1	ENST00000443771.1	RP11-53B5.1	RP11-53B5.1-001	NA	NA	NA	inter
CUST_46671_PI429285431	3.6697474	P	3.8259227	P	0.897401002012407	0	lncRNA	50839-1_{1..1484}	"gi|338221690|ref|NR_039997.1| Homo sapiens uncharacterized LOC100506083 (LOC100506083), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338221690|ref|NR_039997.1| Homo sapiens uncharacterized LOC100506083 (LOC100506083), non-coding RNA"	Chr16	 70349543	 70351026	-	100506083	NR_039997.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_DDX19B:range=chr16:70328749-703674855'pad=0,hg19_refFlat_DDX19B:range=chr16:70328749-703674855'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_DDX19A:range=chr16:70380895-704058895'pad=0,hg19_refFlat_DDX19A:range=chr16:70380895-704058895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_DDX19B:range=chr16:70333201-703674855'pad=0,hg19_refFlat_DDX19B:range=chr16:70333201-703674855'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60"	NA	inter
CUST_12677_PI429285431	4.8270106	P	5.1413875	P	0.80419824897767	0	lncRNA	14294-1_{1..218}	lnc-PLEKHH2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLEKHH2-2:1	chr2	 43433712	 43433929	+	lnc-PLEKHH2-2	lnc-PLEKHH2-2:1	XLOC_001449	linc-PLEKHH2-2	NA	NA	NA	inter
CUST_23812_PI429285431	1.2258475	A	1.3029541	A	0.947956918488096	0	lncRNA	25377-1_{1..707}	lnc-CLEC3A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CLEC3A-1:1	chr16	 78569019	 78569725	+	lnc-CLEC3A-1	lnc-CLEC3A-1:1	ENSG00000261837.1	RP11-264L1.3	WWOX	NA	chr16:78559019-78579545	inner
CUST_48875_PI429285431	1.1155984	A	1.2783543	A	0.893316986323392	0	lncRNA	52712-1_{1..202}	hg19_lincRNAsTranscripts_TCONS_l2_00018583 range=chr3:59521935-59522709 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018583 range=chr3:59521935-59522709 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	 59521935	 59522136	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_629_PI429285431	2.3916132	A	1.3194718	A	2.10255188131328	0	lncRNA	621-1_{1..879}	"transcript_id ""ENST00000586235.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586235.1"" | genecode_v17"	chr2	   308833	   309711	-	ENSG00000235779.2	ENST00000586235.1	AC079779.5	AC079779.5-026	NA	NA	NA	inter
CUST_12134_PI429285431	3.1392257	A	3.357934	P	0.859334487110321	0	lncRNA	13731-1_{1..403}	lnc-RALA-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RALA-1:2	chr7	 39818870	 39819272	+	lnc-RALA-1	lnc-RALA-1:2	XLOC_006057	linc-CDK13-2	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80"	NA	inter
LNCA_21_P0006754	2.7342176	A	2.639978	A	1.06750261208651	0	lncRNA	ENST00000452578	NA	NA	NA	NA	XLOC_008795	NA	ENST00000452578	THC2688315	NA	"BROAD Institute lincRNA (XLOC_008795), lincRNA [TCONS_00017964]"	chr10:44787826-44787767	hs|10q11.21	Agilent_HUMAN_G3V2	ENST00000452578	ENST00000452578	chr10	 44787767	 44787826	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20976_PI429285431	4.043573	P	3.0588255	A	1.97896692439453	0	lncRNA	22605-2_{3001..3510}	lnc-C10orf12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C10orf12-1:1	chr10	 98755207	 98755716	+	lnc-C10orf12-1	lnc-C10orf12-1:1	ENSG00000231025.1	RP11-175O19.4	SLIT1	NA	chr10:98757795-98765716	inter
CUST_29012_PI429285431	1.0185671	A	0.9083816	A	1.07936701129971	0	lncRNA	30736-1_{1..355}	n326496|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099061|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099061|-0.8324240|-0.1336295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326496|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099061|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099061|-0.8324240|-0.1336295	chr1	103594231	103594585	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5994_PI429285431	4.9408436	P	4.980496	P	0.972889325145175	0	lncRNA	5920-1_{1..799}	"transcript_id ""ENST00000586321.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586321.1"" | genecode_v17"	chr17	 76311810	 76312608	+	ENSG00000267737.1	ENST00000586321.1	AC061992.2	AC061992.2-001	SOCS3	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80chr17:76352859-76353879"	NA	inter
CUST_115_PI429201921	0.9118753	A	0.9276066	A	0.989155128030495	0	lncRNA	113-1_{1..3000}	TC09002545.hg.1	TCONS_00015821-XLOC_007704 // Rinn lincRNAs // linc-FAM75A7-10 chr9:-:65880532-65883885 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:-:65880532-65883885	NA	Affy_HUMAN_HTA2.0	TCONS_00015821-XLOC_007704	linc-FAM75A7-10	chr9	 65880532	 65883885	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23978_PI429285431	1.3085814	A	1.6921351	A	0.766547075983231	0	lncRNA	25533-1_{1..1670}	lnc-DHRS7B-5:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHRS7B-5:13	chr17	 20884800	 20886469	+	lnc-DHRS7B-5	lnc-DHRS7B-5:13	ENSG00000264660.1	RP11-381P6.1	NA	NA	NA	inter
LNCA_21_P0002035	0.9169449	A	0.9233798	A	0.995549599719201	0	lncRNA	ENST00000452212	NA	NA	NA	NA	XLOC_002035	NA	ENST00000452212	NA	NA	"BROAD Institute lincRNA (XLOC_002035), lincRNA [TCONS_00003242]"	chr2:28931885-28931826	hs|2p23.2	Agilent_HUMAN_G3V2	ENST00000452212	ENST00000452212	chr2	 28931826	 28931885	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18502_PI429285431	2.2841802	A	2.6745675	A	0.762924765329549	0	lncRNA	20217-1_{1..776}	lnc-TUBGCP2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUBGCP2-1:4	chr10	135090276	135091051	-	lnc-TUBGCP2-1	lnc-TUBGCP2-1:4	ENSG00000151651	ADAM8	ADAM8	NA	chr10:135080276-135090407	inner
LNCA_21_P0010609	0.9168813	A	1.5303143	A	0.653639466228725	0	lncRNA	TCONS_l2_00001211	NA	NA	NA	NA	XLOC_l2_000894	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000894), lincRNA [TCONS_l2_00001211]"	chr1:47333521-47333462	hs|1p33	Agilent_HUMAN_G3V2	TCONS_l2_00001211	TCONS_l2_00001211	chr1	 47333462	 47333521	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21527_PI429285431	13.073558	P	12.997245	P	1.05432013857622	0	lncRNA	23145-1_{1..320}	lnc-C1orf222-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf222-2:3	chr1	  1981037	  1981356	-	lnc-C1orf222-2	lnc-C1orf222-2:3	ENSG00000226969.1	RP11-547D24.3	PRKCZ	NA	chr1:1981909-1991090	inter
CUST_5329_PI429285431	0.9092022	A	0.9159102	A	0.995361161514362	0	lncRNA	5268-1_{1..915}	"transcript_id ""ENST00000556763.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556763.1"" | genecode_v17"	chr15	 94425311	 94426225	+	ENSG00000258831.1	ENST00000556763.1	RP11-76E17.4	RP11-76E17.4-001	NA	NA	NA	inter
CUST_49642_PI429285431	3.9684036	P	4.2387033	P	0.829147284008231	0	lncRNA	53425-1_{1..684}	hg19_lincRNAsTranscripts_TCONS_l2_00025879 range=chr7:55827936-55841359 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025879 range=chr7:55827936-55841359 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 55827936	 55828619	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40105_PI429285431	6.8104744	P	7.052994	P	0.845267801510515	0	lncRNA	40950-1_{1..1479}	n407522|NR_026977|lncRNA|Homosapiens||RefGeneNoncode|NR_026977||7.5811900|-0.1181346	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407522|NR_026977|lncRNA|Homosapiens||RefGeneNoncode|NR_026977||7.5811900|-0.1181346	chr1	150898824	150900302	+	NA	NA	NA	NA	SETDB1	NA	chr1:150898815-150927797	inner
CUST_32877_PI429285431	6.550043	P	6.732078	P	0.881458773324552	0	lncRNA	34505-2_{3001..3973}	n339542|BC040996|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1984|NULL|0.7115030|-0.2016636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339542|BC040996|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1984|NULL|0.7115030|-0.2016636	chr21	 47182717	 47183689	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90"	NA	inter
CUST_8892_PI429285431	0.9199079	A	0.9275439	A	0.994721110695377	0	lncRNA	10428-2_{3001..3946}	lnc-RDH10-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RDH10-3:1	chr8	 74365201	 74366146	+	lnc-RDH10-3	lnc-RDH10-3:1	ENSG00000251683	ENST00000510691	STAU2	NA	chr8:74352201-74375458	inner
LNCA_21_P0005432	0.91493434	A	2.2885294	A	0.385928352098967	0	lncRNA	TCONS_00013598	NA	NA	NA	NA	XLOC_006252	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006252), lincRNA [TCONS_00013598]"	chr7:130606852-130606911	hs|7q32.3	Agilent_HUMAN_G3V2	TCONS_00013598	TCONS_00013598	chr7	130606852	130606911	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22164_PI429285431	0.9184119	A	0.9260739	A	0.994703184165445	0	lncRNA	23766-1_{1..401}	lnc-RPRML-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RPRML-4:1	chr17	 45239089	 45239489	-	lnc-RPRML-4	lnc-RPRML-4:1	ENSG00000262265.1	RP5-867C24.4	CDC27	NA	chr17:45229089-45249430	inner
CUST_45482_PI429285431	1.5819542	A	2.0550895	A	0.720397310364211	0	lncRNA	49897-1_{1..441}	"gi|397139354|ref|XR_158857.1| PREDICTED: Homo sapiens uncharacterized LOC642422 (LOC642422), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139354|ref|XR_158857.1| PREDICTED: Homo sapiens uncharacterized LOC642422 (LOC642422), misc_RNA"	NA	NA	NA	NA	NA	XR_158857.1	NA	NA	NA	NA	NA	Unknown
CUST_11607_PI429285431	2.094759	A	2.5203729	A	0.744521852933813	0	lncRNA	13187-1_{1..1679}	lnc-AC131097.4.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC131097.4.1-3:1	chr2	243026247	243027925	-	lnc-AC131097.4.1-3	lnc-AC131097.4.1-3:1	XLOC_002560	linc-PDCD1-4	NA	NA	NA	inter
CUST_15368_PI429285431	0.90975505	A	0.91791177	A	0.9943621452202	0	lncRNA	17051-1_{1..312}	lnc-TNFAIP6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFAIP6-2:2	chr2	151486154	151486465	+	lnc-TNFAIP6-2	lnc-TNFAIP6-2:2	XLOC_001707	linc-TNFAIP6-2	NA	NA	NA	inter
CUST_31869_PI429285431	1.964017	A	2.6756136	A	0.610643978030827	0	lncRNA	33601-1_{1..2869}	n338421|AK092670|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|818|NULL|-0.2961620|-0.3484871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338421|AK092670|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|818|NULL|-0.2961620|-0.3484871	chr1	184727265	184730133	+	NA	NA	NA	NA	EDEM3	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.21;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50chr1:184717265-184724041"	NA	inter
CUST_10759_PI429285431	4.011485	P	4.1976814	P	0.878919901791822	0	lncRNA	12295-1_{1..352}	lnc-AC112715.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC112715.2.1-1:1	chr2	238166073	238166424	+	lnc-AC112715.2.1-1	lnc-AC112715.2.1-1:1	XLOC_001910	linc-MLPH-2	NA	NA	NA	inter
CUST_22516_PI429285431	3.3015406	P	3.400182	P	0.933912051655664	0	lncRNA	24103-1_{1..793}	lnc-CLEC3A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CLEC3A-3:1	chr16	 79038046	 79038838	+	lnc-CLEC3A-3	lnc-CLEC3A-3:1	ENSG00000261537.1	RP11-319G9.5	WWOX	NA	chr16:79028046-79048627	inner
LNCA_21_P0012475	3.6465344	P	3.8366401	P	0.876541498574635	0	lncRNA	TCONS_l2_00019667	NA	NA	NA	NA	XLOC_l2_010489	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010489), lincRNA [TCONS_l2_00019667]"	chr3:193310830-193308119	hs|3q29	Agilent_HUMAN_G3V2	TCONS_l2_00019667	TCONS_l2_00019667	chr3	193308119	193310830	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30890_PI429285431	0.91248256	A	0.9188031	A	0.995628518382887	0	lncRNA	32678-1_{1..552}	n336903|AY927515|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332677|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332677|-1.4693400|-0.2384159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336903|AY927515|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332677|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332677|-1.4693400|-0.2384159	chr20	 13200349	 13200900	+	NA	NA	NA	NA	ISM1	NA	chr20:13202418-13211032	inter
CUST_157_PI429285431	0.89673364	A	0.8900349	A	1.00465400916015	0	lncRNA	148-1_{1..477}	"transcript_id ""ENST00000424689.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424689.1"" | genecode_v17"	chr1	  8278250	  8278726	-	ENSG00000233645.1	ENST00000424689.1	RP11-431K24.4	RP11-431K24.4-001	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
CUST_25828_PI429285431	1.3472544	A	1.759124	A	0.751648674774526	0	lncRNA	27349-1_{1..388}	lnc-TARBP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TARBP1-3:1	chr1	234408100	234408487	-	lnc-TARBP1-3	lnc-TARBP1-3:1	ENSG00000236244.1	RP4-799P18.3	SLC35F3	NA	chr1:234398100-234418246	inner
CUST_16834_PI429285431	0.90463394	A	0.9145065	A	0.993180223816216	0	lncRNA	18541-1_{1..1477}	lnc-CBLB-7:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CBLB-7:14	chr3	106558322	106559798	-	lnc-CBLB-7	lnc-CBLB-7:14	XLOC_003202	linc-CBLB-4	NA	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10"	NA	inter
CUST_32718_PI429285431	4.1689105	P	3.2121446	A	1.94095396362461	0	lncRNA	34361-1_{1..1922}	n339349|BC036224|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1781|NULL|-1.0408500|-0.2376351	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339349|BC036224|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1781|NULL|-1.0408500|-0.2376351	chr3	 47420583	 47422504	-	NA	NA	NA	NA	PTPN23	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50chr3:47422491-47432489"	NA	inter
CUST_8675_PI429285431	1.8307266	A	1.5896962	A	1.18183644994473	0	lncRNA	10224-1_{1..780}	lnc-AMIGO2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AMIGO2-1:5	chr12	 47609948	 47610727	-	lnc-AMIGO2-1	lnc-AMIGO2-1:5	ENSG00000247774	RP11-493L12.2	FAM113B	NA	chr12:47610052-47620217	inner
CUST_34237_PI429285431	4.2144594	P	3.9235792	P	1.22338644808714	0	lncRNA	35744-1_{1..1871}	n341095|AK127973|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3561|NULL|7.5135200|-0.1864590	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341095|AK127973|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3561|NULL|7.5135200|-0.1864590	chr11	 93063155	 93065025	+	NA	NA	NA	NA	CCDC67	NA	chr11:93063883-93158366	inner
CUST_35441_PI429285431	0.95637214	A	0.90573704	A	1.03572076618963	0	lncRNA	36848-1_{1..625}	n342508|AL357201|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5002|NULL|-1.1436000|-0.6148993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342508|AL357201|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5002|NULL|-1.1436000|-0.6148993	chr3	 88177246	 88177870	+	NA	NA	NA	NA	CGGBP1	NA	chr3:88167246-88187870	inner
CUST_33491_PI429285431	2.1993804	A	3.1568592	P	0.514956045416868	0	lncRNA	35063-1_{1..1387}	n340230|BC035328|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2691|NULL|-0.8987930|-0.3234838	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340230|BC035328|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2691|NULL|-0.8987930|-0.3234838	chr4	140652784	140654170	+	NA	NA	NA	NA	MGST2	NA	chr4:140642784-140661899	inner
CUST_30645_PI429285431	1.5690488	A	2.158887	A	0.664417418089844	0	lncRNA	32427-1_{1..318}	n336019|X79855|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323773|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323773|0.2413990|-0.1426609	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336019|X79855|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323773|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323773|0.2413990|-0.1426609	chr1	201334405	201334722	-	NA	NA	NA	NA	TNNT2	NA	chr1:201328142-201346805	inner
CUST_50285_PI429285431	1.299311	A	1.0564835	A	1.18330952747184	0	lncRNA	54007-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00028843 range=chr9:76064311-76092053 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028843 range=chr9:76064311-76092053 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 76067311	 76070310	+	NA	NA	NA	NA	NA	"hg19_refFlat_DPP3:range=chr11:66249672-662767225'pad=0,hg19_refFlat_DPP3:range=chr11:66249672-662767225'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60"	NA	inter
CUST_36560_PI429285431	4.904012	P	4.8834467	P	1.01435686356891	0	lncRNA	37756-1_{1..1019}	n345058|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_607|NULL|-1.5274700|-0.1380664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345058|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_607|NULL|-1.5274700|-0.1380664	chr9	110163815	110164833	-	NA	NA	NA	NA	NA	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90"	NA	inter
CUST_21561_PI429285431	0.89625585	A	0.90637267	A	0.99301208456352	0	lncRNA	23177-1_{1..946}	lnc-TMEM156-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM156-1:1	chr4	 39128328	 39129273	-	lnc-TMEM156-1	lnc-TMEM156-1:1	ENSG00000249207.1	RP11-360F5.1	KLHL5	"hg19_refFlat_KLHL5:range=chr4:39064135-391226865'pad=0,hg19_refFlat_KLHL5:range=chr4:39064135-391226865'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_KLHL5:range=chr4:39064273-391226865'pad=0,hg19_refFlat_KLHL5:range=chr4:39064273-391226865'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_KLHL5:range=chr4:39077625-391226865'pad=0,hg19_refFlat_KLHL5:range=chr4:39077625-391226865'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90chr4:39118328-39127853"	NA	inter
CUST_47724_PI429285431	0.8893669	A	0.88801044	A	1.00094066857597	0	lncRNA	51682-1_{1..3000}	"gi|385137071|ref|NR_047609.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 39, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137071|ref|NR_047609.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 39, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047609.1	NA	NA	NA	NA	NA	inter
CUST_50652_PI429285431	1.4469836	A	1.9305896	A	0.715187784288755	0	lncRNA	54330-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00002974 range=chr10:37591922-37600067 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002974 range=chr10:37591922-37600067 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 37591922	 37594921	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27781_PI429285431	4.993808	P	5.660795	P	0.629820665207568	0	lncRNA	29366-2_{3001..3965}	n325001|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000315979|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000315979|1.0713700|-0.1907653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325001|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000315979|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000315979|1.0713700|-0.1907653	chr20	 33567809	 33568773	+	NA	NA	NA	NA	MYH7B	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60chr20:33554809-33578774"	NA	inner
CUST_24950_PI429285431	7.6587977	P	9.574781	P	0.264991263253282	0	lncRNA	26489-1_{1..373}	lnc-INS-IGF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-INS-IGF2-1:1	chr11	  2151151	  2151523	-	lnc-INS-IGF2-1	lnc-INS-IGF2-1:1	ENSG00000240801.1	AC132217.4	IGF2	NA	chr11:2150347-2161194	inner
CUST_10353_PI429285431	2.753438	A	2.8519952	A	0.933966559148421	0	lncRNA	11881-1_{1..3000}	lnc-VTI1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-VTI1A-1:1	chr10	114590541	114593540	+	lnc-VTI1A-1	lnc-VTI1A-1:1	XLOC_008617	linc-TCF7L2-3	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30"	NA	inter
CUST_1124_PI429285431	1.5444643	A	1.0395621	A	1.41902715738072	0	lncRNA	1113-1_{1..348}	"transcript_id ""ENST00000454965.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454965.1"" | genecode_v17"	chr2	146051845	146052192	-	ENSG00000235435.1	ENST00000454965.1	AC064865.1	AC064865.1-001	NA	NA	NA	inter
CUST_5824_PI429285431	0.8933421	A	1.3275641	A	0.740092755745424	0	lncRNA	5752-1_{1..396}	"transcript_id ""ENST00000585536.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585536.1"" | genecode_v17"	chr17	 33867058	 33867453	-	ENSG00000267035.1	ENST00000585536.1	RP11-1094M14.10	RP11-1094M14.10-001	SLFN14	NA	chr17:33875144-33877816	inter
CUST_48105_PI429285431	3.394015	P	3.2123547	P	1.13418839511425	0	lncRNA	51978-1_{1..1057}	"gi|310115415|ref|XR_113108.1| PREDICTED: Homo sapiens uncharacterized LOC100129129 (LOC100129129), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310115415|ref|XR_113108.1| PREDICTED: Homo sapiens uncharacterized LOC100129129 (LOC100129129), misc_RNA"	NA	NA	NA	NA	NA	XR_113108.1	NA	NA	NA	NA	NA	Unknown
CUST_17531_PI429285431	1.2413651	A	1.5596455	A	0.802025270799091	0	lncRNA	19256-1_{1..1945}	lnc-ASMT-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASMT-5:1	chrX	  1900370	  1902314	+	lnc-ASMT-5	lnc-ASMT-5:1	XLOC_007918	linc-CD99-3	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	inter
CUST_48561_PI429285431	3.8259227	P	4.1704183	P	0.787583286015151	0	lncRNA	52409-1_{1..563}	hg19_lincRNAsTranscripts_TCONS_l2_00015575 range=chr2:201560640-201612763 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015575 range=chr2:201560640-201612763 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	201560640	201561202	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51544_PI429285431	0.8918421	A	0.89847505	A	0.99541294224148	0	lncRNA	55110-3_{6001..6245}	hg19_lincRNAsTranscripts_TCONS_l2_00010547 range=chr17:7040595-7049718 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010547 range=chr17:7040595-7049718 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	  7046595	  7046839	+	NA	NA	NA	NA	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40"	NA	inter
CUST_25082_PI429285431	7.9074955	P	7.9977493	P	0.939357482200545	0	lncRNA	26618-1_{1..414}	lnc-DLX2-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DLX2-4:3	chr2	173420817	173421230	-	lnc-DLX2-4	lnc-DLX2-4:3	ENSG00000225205.1	AC093818.1	PDK1	"hg19_refFlat_PDK1:range=chr2:173420879-1734606975'pad=0,hg19_refFlat_PDK1:range=chr2:173420879-1734606975'pad=0 3'pad=0 strand=+ repeatMasking=none,-111.50;hg19_refFlat_PDK3:range=chrX:24483573-245572815'pad=0,hg19_refFlat_PDK3:range=chrX:24483573-245572815'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_PDK3:range=chrX:24483573-245521895'pad=0,hg19_refFlat_PDK3:range=chrX:24483573-245521895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10chr2:173420779-173431136"	NA	inner
CUST_41369_PI429285431	4.978445	P	5.9957647	P	0.494033336250249	0	lncRNA	42453-1_{1..100}	ENST00000385237 ncrna:miRNA chromosome:GRCh37:19:10829080:10829179:1 gene:ENSG00000207972 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385237 ncrna:miRNA chromosome:GRCh37:19:10829080:10829179:1 gene:ENSG00000207972 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 10829080	 10829179	+	ENSG00000207972	ENST00000385237	NA	NA	DNM2	NA	chr19:10828729-10839179	inner
CUST_43513_PI429285431	3.76226	P	3.642441	P	1.08659852971409	0	lncRNA	48300-1_{1..592}	"gi|310118615|ref|XR_110474.1| PREDICTED: Homo sapiens uncharacterized LOC100505840 (LOC100505840), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310118615|ref|XR_110474.1| PREDICTED: Homo sapiens uncharacterized LOC100505840 (LOC100505840), misc_RNA"	NA	NA	NA	NA	NA	XR_110474.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010371	4.4334073	P	4.8413715	P	0.753686157019709	0	lncRNA	ENST00000434510	NA	NA	NA	NA	XLOC_014326	NA	ENST00000434510	NA	NA	"BROAD Institute lincRNA (XLOC_014326), lincRNA [TCONS_00029458]"	chr22:26557939-26557880	hs|22q12.1	Agilent_HUMAN_G3V2	ENST00000434510	ENST00000434510	chr22	 26557880	 26557939	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46203_PI429285431	0.9157922	A	0.9220196	A	0.995692797964532	0	lncRNA	50446-1_{1..2092}	"gi|213688418|ref|NR_024505.1| Homo sapiens long intergenic non-protein coding RNA 598 (LINC00598), transcript variant TTL-T, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|213688418|ref|NR_024505.1| Homo sapiens long intergenic non-protein coding RNA 598 (LINC00598), transcript variant TTL-T, non-coding RNA"	Chr13	 41025071	 41027162	-	646982	NR_024505.1	NA	NA	NA	NA	NA	inter
CUST_9161_PI429285431	0.8924284	A	0.8964461	A	0.997219016690986	0	lncRNA	10679-1_{1..516}	lnc-ZMAT3-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZMAT3-2:4	chr3	178577277	178577792	-	lnc-ZMAT3-2	lnc-ZMAT3-2:4	ENSG00000237978	RP11-385J1.2	NA	NA	NA	inter
CUST_4223_PI429285431	0.9064026	A	0.9078175	A	0.999019746816582	0	lncRNA	4182-1_{1..1022}	"transcript_id ""ENST00000561632.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561632.1"" | genecode_v17"	chr12	 33557810	 33558831	-	ENSG00000259937.1	ENST00000561632.1	RP11-438D14.2	RP11-438D14.2-001	SYT10	NA	chr12:33547810-33568831	inner
CUST_17804_PI429285431	2.795296	A	2.5190063	A	1.21107624938456	0	lncRNA	19537-2_{3001..4161}	lnc-ARFGEF2-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARFGEF2-3:8	chr20	 46999823	 47000983	+	lnc-ARFGEF2-3	lnc-ARFGEF2-3:8	XLOC_013551	linc-ARFGEF2-4	NA	NA	NA	inter
CUST_38885_PI429285431	1.1089194	A	1.2420642	A	0.911841641467788	0	lncRNA	39872-1_{1..1486}	n384824|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003mzz.1||1.7529300|-0.2630679	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n384824|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003mzz.1||1.7529300|-0.2630679	chr6	 11487462	 11488947	+	NA	NA	NA	NA	NA	"hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10"	NA	inter
CUST_1651_PI429285431	4.2075176	P	4.2830157	P	0.949014410882794	0	lncRNA	1636-1_{1..599}	"transcript_id ""ENST00000600382.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600382.1"" | genecode_v17"	chr3	195435025	195435623	+	ENSG00000242086.3	ENST00000600382.1	AC069513.3	AC069513.3-015	MUC20	NA	chr3:195447753-195454526	inter
CUST_20264_PI429285431	1.1429241	A	1.0775616	A	1.04634781824199	0	lncRNA	21907-1_{1..495}	lnc-DDX51-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DDX51-2:1	chr12	132564823	132565317	-	lnc-DDX51-2	lnc-DDX51-2:1	ENSG00000257000.1	RP13-820C6.2	EP400	NA	chr12:132554823-132565011	inner
CUST_29072_PI429285431	0.9036513	A	0.9141809	A	0.992728007275429	0	lncRNA	30802-1_{1..557}	n326564|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026418|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026418|-1.2092400|-0.3188480	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326564|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026418|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026418|-1.2092400|-0.3188480	chr1	 73873486	 73874042	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23762_PI429285431	2.491616	A	2.157879	A	1.2602736256467	0	lncRNA	25325-1_{1..495}	lnc-FGF23-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FGF23-1:1	chr12	  4384188	  4384682	-	lnc-FGF23-1	lnc-FGF23-1:1	ENSG00000255920.1	RP11-264F23.4	CCND2	NA	chr12:4382902-4394231	inner
CUST_17807_PI429285431	0.8945683	A	0.8944329	A	1.0000938565325	0	lncRNA	19542-1_{1..517}	lnc-KLF15-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF15-2:2	chr3	126012762	126013278	-	lnc-KLF15-2	lnc-KLF15-2:2	XLOC_003235	linc-ALDH1L1-2	LOC644662	NA	chr3:126002762-126010368	inter
CUST_47405_PI429285431	0.9039763	A	0.89926517	A	1.00327084405141	0	lncRNA	51448-1_{1..1045}	"gi|219521863|ref|NR_026547.1| Homo sapiens chromosome 21 open reading frame 90 (C21orf90), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219521863|ref|NR_026547.1| Homo sapiens chromosome 21 open reading frame 90 (C21orf90), transcript variant 1, non-coding RNA"	NW_004775435.1	    20538	    21582	+	114043	NR_026547.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005632	0.9083475	A	0.9010098	A	1.00509906226047	0	lncRNA	AK130001	NA	AK130001	NA	Hs.640037	XLOC_006857	NA	NA	THC2594129	NA	"BROAD Institute lincRNA (XLOC_006857), lincRNA [TCONS_00014542]"	chr8:81864445-81864504	hs|8q21.13	Agilent_HUMAN_G3V2	AK130001	AK130001	chr8	 81864445	 81864504	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26550_PI429285431	0.8970953	A	0.8891176	A	1.00554503738556	0	lncRNA	28054-1_{1..435}	lnc-TNFRSF17-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TNFRSF17-3:2	chr16	 12467526	 12467960	+	lnc-TNFRSF17-3	lnc-TNFRSF17-3:2	ENSG00000260723.1	RP11-165M1.2	SNX29	NA	chr16:12457526-12477754	inner
CUST_35366_PI429285431	14.721739	P	15.163679	P	0.73614404581766	0	lncRNA	36774-1_{1..796}	n342407|CR617899|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4899|NULL|1.2660000|-0.1826837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342407|CR617899|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4899|NULL|1.2660000|-0.1826837	chr19	 48281920	 48282715	+	NA	NA	NA	NA	SEPW1	NA	chr19:48281842-48287939	inner
CUST_4114_PI429285431	9.639581	P	9.71673	P	0.947929058974076	0	lncRNA	4075-1_{1..669}	"transcript_id ""ENST00000532116.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532116.3"" | genecode_v17"	chr11	130184923	130185591	+	ENSG00000175773.8	ENST00000532116.3	RP11-121M22.1	RP11-121M22.1-004	ZBTB44	NA	chr11:130174923-130184607	inter
LNCA_21_P0004240	0.91132027	A	1.0744046	A	0.893113645564164	0	lncRNA	TCONS_00009923	NA	NA	NA	NA	XLOC_004343	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004343), lincRNA [TCONS_00009923]"	chr5:38013554-38013613	hs|5p13.2	Agilent_HUMAN_G3V2	TCONS_00009923	TCONS_00009923	chr5	 38013554	 38013613	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48440_PI429285431	1.131587	A	1.5801058	A	0.732794814706556	0	lncRNA	52293-1_{1..230}	hg19_lincRNAsTranscripts_TCONS_l2_00000673 range=chr1:166542930-166543981 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000673 range=chr1:166542930-166543981 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	166542930	166543159	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5972_PI429285431	6.632701	P	6.4790287	P	1.11239741711865	0	lncRNA	5900-2_{3001..3493}	"transcript_id ""ENST00000569279.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569279.1"" | genecode_v17"	chr17	 72602876	 72603368	+	ENSG00000261222.2	ENST00000569279.1	CTD-2006K23.1	CTD-2006K23.1-001	CD300E	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90chr17:72606022-72613368"	NA	inter
CUST_35716_PI429285431	14.157383	P	15.187439	P	0.489691140454682	0	lncRNA	37135-1_{1..1875}	n342882|M23616|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5388|NULL|2.5321800|-0.0857908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342882|M23616|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5388|NULL|2.5321800|-0.0857908	chr6	 34204649	 34206523	+	NA	NA	NA	NA	HMGA1	NA	chr6:34194649-34214008	inner
CUST_40575_PI429285431	8.6915455	P	8.565965	P	1.09094661066557	0	lncRNA	41328-2_{3001..6000}	n410019|NR_036447|lncRNA|Homosapiens||RefGeneNoncode|NR_036447||14.5527000|-0.0789384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410019|NR_036447|lncRNA|Homosapiens||RefGeneNoncode|NR_036447||14.5527000|-0.0789384	chr16	 16414465	 16417464	+	NA	NA	NA	NA	LOC100288368	NA	chr16:16418988-16419785	inter
CUST_38430_PI429285431	1.4194709	A	1.6439769	A	0.855888044166856	0	lncRNA	39457-1_{1..909}	n382551|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002aeh.2||-1.0977900|-0.2611055	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382551|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002aeh.2||-1.0977900|-0.2611055	chr15	 57669343	 57670251	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_41903_PI429285431	6.7708836	P	6.853528	P	0.944325150692747	0	lncRNA	43629-1_{1..80}	ENST00000577414 ncrna:miRNA chromosome:GRCh37:19:47730199:47730278:1 gene:ENSG00000265134 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577414 ncrna:miRNA chromosome:GRCh37:19:47730199:47730278:1 gene:ENSG00000265134 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 47730199	 47730278	+	ENSG00000265134	ENST00000577414	NA	NA	BBC3	NA	chr19:47724079-47736023	inner
CUST_41829_PI429285431	2.8292294	A	3.4350202	P	0.65711109197392	0	lncRNA	43429-1_{1..80}	ENST00000578534 ncrna:miRNA chromosome:GRCh37:11:19781550:19781629:-1 gene:ENSG00000264309 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578534 ncrna:miRNA chromosome:GRCh37:11:19781550:19781629:-1 gene:ENSG00000264309 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 19781550	 19781629	-	ENSG00000264309	ENST00000578534	NA	NA	NAV2	NA	chr11:19771550-19791629	inner
CUST_36361_PI429285431	0.9298517	A	1.1967658	A	0.831095344653313	0	lncRNA	37583-1_{1..3000}	n344880|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_429|NULL|-1.3514000|-0.3455275	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344880|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_429|NULL|-1.3514000|-0.3455275	chr6	158666211	158669210	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30"	NA	inter
CUST_346_PI429201921	0.89931893	A	0.89512825	A	1.00290898092407	0	lncRNA	226-1_{1..3000}	TC13001311.hg.1	TCONS_00021603-XLOC_010507 // Rinn lincRNAs // linc-C13orf28-1 chr13:+:112967780-112976072 // chr13 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr13:+:112967780-112976072	NA	Affy_HUMAN_HTA2.0	TCONS_00021603-XLOC_010507	linc-C13orf28-1	chr13	112967780	112976072	+	NA	NA	NA	NA	ACOT11	NA	chr1:54990059-54992932	Unknown
CUST_5771_PI429285431	0.8888555	A	0.8918119	A	0.99795287789388	0	lncRNA	5695-1_{1..3000}	"transcript_id ""ENST00000591705.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591705.1"" | genecode_v17"	chr17	 20448684	 20451683	+	ENSG00000267075.1	ENST00000591705.1	RP11-434D2.3	RP11-434D2.3-001	CDRT15L2	"hg19_refFlat_TBC1D3:range=chr17:36285545-362946005'pad=0,hg19_refFlat_TBC1D3:range=chr17:36285545-362946005'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_TBC1D3C:range=chr17:34581400-345904545'pad=0,hg19_refFlat_TBC1D3C:range=chr17:34581400-345904545'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10;hg19_refFlat_TBC1D3B:range=chr17:34493375-345024105'pad=0,hg19_refFlat_TBC1D3B:range=chr17:34493375-345024105'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10;hg19_refFlat_TBC1D3:range=chr17:36338026-363470815'pad=0,hg19_refFlat_TBC1D3:range=chr17:36338026-363470815'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10;hg19_refFlat_USP6:range=chr17:5033663-50762735'pad=0,hg19_refFlat_USP6:range=chr17:5033663-50762735'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30;hg19_refFlat_TBC1D3F:range=chr17:36285545-362946005'pad=0,hg19_refFlat_TBC1D3F:range=chr17:36285545-362946005'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_TBC1D3H:range=chr17:34746434-347554655'pad=0,hg19_refFlat_TBC1D3H:range=chr17:34746434-347554655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_TBC1D3G:range=chr17:34797486-348065185'pad=0,hg19_refFlat_TBC1D3G:range=chr17:34797486-348065185'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10;hg19_refFlat_TBC1D3F:range=chr17:36338026-363470815'pad=0,hg19_refFlat_TBC1D3F:range=chr17:36338026-363470815'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10chr17:20438684-20463265"	NA	inter
LNCA_21_P0008420	4.0406423	P	4.3188024	P	0.824642030644578	0	lncRNA	TCONS_00022707	NA	NA	NA	NA	XLOC_010995	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010995), lincRNA [TCONS_00022707]"	chr14:36516979-36516920	hs|14q13.2	Agilent_HUMAN_G3V2	TCONS_00022707	TCONS_00022707	chr14	 36516920	 36516979	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4981_PI429285431	0.9200989	A	1.2899408	A	0.77386729758679	0	lncRNA	4925-1_{1..542}	"transcript_id ""ENST00000555776.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555776.1"" | genecode_v17"	chr14	 98534577	 98535118	-	ENSG00000259097.1	ENST00000555776.1	RP11-61O1.1	RP11-61O1.1-001	NA	NA	NA	inter
CUST_9873_PI429285431	2.34476	A	2.0015864	A	1.26854403449071	0	lncRNA	11396-1_{1..806}	lnc-SMC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMC2-1:1	chr9	106847715	106848520	+	lnc-SMC2-1	lnc-SMC2-1:1	XLOC_007497	linc-SMC2-1	SMC2	NA	chr9:106856541-106857977	inter
CUST_20448_PI429285431	3.8989968	P	3.7462983	P	1.11164681698086	0	lncRNA	22092-1_{1..741}	lnc-FNDC9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FNDC9-1:1	chr5	156887016	156887756	-	lnc-FNDC9-1	lnc-FNDC9-1:1	ENSG00000251405.2	CTB-109A12.1	NIPAL4	NA	chr5:156887027-156897086	inner
LNCA_33_P3296852	17.901638	P	18.058746	P	0.896821021221126	0	lncRNA	ENST00000381105	XR_110925	XR_110925	NA	Hs.636199	NA	NA	ENST00000381105	THC2500456	NA	"PREDICTED: Homo sapiens hypothetical LOC100506453 (LOC100506453), miscRNA [XR_110925]"	chrX:3849132-3849073	hs|Xp22.33	Agilent_HUMAN_G3V2	ENST00000381105	ENST00000381105	chrX	  3849073	  3849132	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16060_PI429285431	1.1980507	A	0.9010134	A	1.22861874522302	0	lncRNA	17762-1_{1..254}	lnc-NOV-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOV-1:1	chr8	120050294	120050547	+	lnc-NOV-1	lnc-NOV-1:1	XLOC_006908	linc-COLEC10-1	NA	NA	NA	inter
CUST_29216_PI429285431	5.1702137	P	5.1886473	P	0.987304083972096	0	lncRNA	30965-1_{1..443}	n326739|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097857|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097857|-1.0418400|-0.0274765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326739|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097857|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097857|-1.0418400|-0.0274765	chr1	   839413	   839855	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50174_PI429285431	1.2646115	A	0.9312489	A	1.25994660904796	0	lncRNA	53900-1_{1..1105}	hg19_lincRNAsTranscripts_TCONS_l2_00029230 range=chr9:27608293-27609508 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029230 range=chr9:27608293-27609508 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 27608293	 27609397	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23960_PI429285431	1.5532051	A	1.5274353	A	1.01802274856897	0	lncRNA	25516-1_{1..3000}	lnc-C11orf39-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C11orf39-2:1	chr11	131410711	131413710	-	lnc-C11orf39-2	lnc-C11orf39-2:1	ENSG00000237654.1	AP003025.2	NTM	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20chr11:131400711-131420761"	NA	inner
CUST_50578_PI429285431	6.9777546	P	6.9988575	P	0.985479045292593	0	lncRNA	54271-1_{1..436}	hg19_lincRNAsTranscripts_TCONS_l2_00030917 range=chrY:28722010-28725947 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030917 range=chrY:28722010-28725947 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrY	 28722010	 28722445	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26876_PI429285431	2.5138524	A	1.792963	A	1.64819781079366	0	lncRNA	28393-1_{1..382}	n323951|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000106525|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000106525|-1.2142800|-0.4311409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323951|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000106525|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000106525|-1.2142800|-0.4311409	chr9	131304089	131304470	+	NA	NA	NA	NA	SPTAN1	NA	chr9:131314837-131325786	inner
CUST_42242_PI429285431	8.349562	P	8.570495	P	0.858010376244151	0	lncRNA	44377-1_{1..66}	ENST00000387405 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:5761:5826:-1 gene:ENSG00000210140 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000387405 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:5761:5826:-1 gene:ENSG00000210140 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	chrMT	     5761	     5826	-	ENSG00000210140	ENST00000387405	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003221	1.6674211	A	2.1585412	A	0.711472500217532	0	lncRNA	TCONS_00006796	NA	NA	NA	NA	XLOC_002588	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002588), lincRNA [TCONS_00006796]"	chr3:16580344-16580403	hs|3p24.3	Agilent_HUMAN_G3V2	TCONS_00006796	TCONS_00006796	chr3	 16580344	 16580403	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35490_PI429285431	0.90209067	A	1.808458	A	0.533526808461257	0	lncRNA	36898-1_{1..1483}	n342588|AL049283|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5088|NULL|-0.8234080|-0.3432903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342588|AL049283|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5088|NULL|-0.8234080|-0.3432903	chr10	 27632364	 27633846	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29409_PI429285431	3.9002352	P	3.8320253	P	1.04841499998983	0	lncRNA	31163-1_{1..232}	n332773|AF035327|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063258|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063258|1.2408600|-0.3804035	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332773|AF035327|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063258|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063258|1.2408600|-0.3804035	chr11	108123548	108123779	+	NA	NA	NA	NA	ATM	NA	chr11:108113548-108134723	inner
CUST_50932_PI429285431	15.084419	P	13.902449	P	2.2688637896852	0	lncRNA	54573-1_{1..456}	hg19_lincRNAsTranscripts_TCONS_l2_00005603 range=chr12:44054685-44055207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005603 range=chr12:44054685-44055207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 44054685	 44055140	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009728	5.119826	P	5.3799515	P	0.835015278313912	0	lncRNA	TCONS_00027083	NA	NA	NA	NA	XLOC_013124	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013124), lincRNA [TCONS_00027083]"	chr19:51719251-51719310	hs|19q13.41	Agilent_HUMAN_G3V2	TCONS_00027083	TCONS_00027083	chr19	 51719251	 51719310	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008962	0.91658217	A	1.0373483	A	0.919699123118752	0	lncRNA	TCONS_00024444	NA	NA	NA	NA	XLOC_011767	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011767), lincRNA [TCONS_00024444]"	chr16:68645152-68645211	hs|16q22.1	Agilent_HUMAN_G3V2	TCONS_00024444	TCONS_00024444	chr16	 68645152	 68645211	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19548_PI429285431	2.0243282	A	1.335395	A	1.61209101784606	0	lncRNA	21204-1_{1..643}	lnc-TTLL7-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTLL7-8:1	chr1	 82023349	 82023991	-	lnc-TTLL7-8	lnc-TTLL7-8:1	ENSG00000234953.2	RP5-837I24.2	NA	NA	NA	inter
CUST_7308_PI429285431	1.0712762	A	1.0921543	A	0.985632614095276	0	lncRNA	8470-1_{1..244}	"transcript_id ""ENST00000517266.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517266.1"" | genecode_v17"	chr14	100953881	100954124	+	ENSG00000253075.1	ENST00000517266.1	RN7SKP92	RN7SKP92-201	WDR25	NA	chr14:100943881-100964124	inner
CUST_2873_PI429285431	4.0289955	P	4.40927	P	0.768291394776802	0	lncRNA	2854-1_{1..2776}	"transcript_id ""ENST00000567919.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567919.1"" | genecode_v17"	chr7	 73400322	 73403097	+	ENSG00000261467.2	ENST00000567919.1	RP11-731K22.1	RP11-731K22.1-001	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40"	NA	inter
CUST_45756_PI429285431	7.8008966	P	8.230211	P	0.742614608055049	0	lncRNA	50103-1_{1..3000}	"gi|310120625|ref|XR_109062.1| PREDICTED: Homo sapiens uncharacterized LOC100506258 (LOC100506258), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310120625|ref|XR_109062.1| PREDICTED: Homo sapiens uncharacterized LOC100506258 (LOC100506258), misc_RNA"	NA	NA	NA	NA	NA	XR_109062.1	NA	NA	NA	NA	NA	Unknown
CUST_46649_PI429285431	0.91032904	A	0.922266	A	0.991760065737613	0	lncRNA	50822-1_{1..376}	"gi|239835749|ref|NR_027781.1| Homo sapiens metallothionein 1D, pseudogene (MT1DP), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|239835749|ref|NR_027781.1| Homo sapiens metallothionein 1D, pseudogene (MT1DP), transcript variant 2, non-coding RNA"	Chr16	 56677599	 56677974	+	326343	NR_027781.1	NA	NA	NA	NA	NA	inter
CUST_24957_PI429285431	2.7295287	A	2.80053	A	0.951977050678874	0	lncRNA	26495-2_{3001..3907}	lnc-EDC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-EDC4-1:1	chr16	 67919364	 67920270	+	lnc-EDC4-1	lnc-EDC4-1:1	ENSG00000263126.1	CTC-479C5.10	EDC4	NA	chr16:67906999-67918406	inner
CUST_42818_PI429285431	8.205755	P	7.805206	P	1.32001012896359	0	lncRNA	45825-1_{1..137}	ENST00000517095 ncrna:snoRNA chromosome:GRCh37:5:65257011:65257147:-1 gene:ENSG00000252904 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517095 ncrna:snoRNA chromosome:GRCh37:5:65257011:65257147:-1 gene:ENSG00000252904 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	 65257011	 65257147	-	ENSG00000252904	ENST00000517095	NA	NA	ERBB2IP	NA	chr5:65247011-65267147	inner
CUST_30857_PI429285431	1.5379595	A	1.892856	A	0.781925737042134	0	lncRNA	32645-1_{1..270}	n336854|AY566846|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331938_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331938_04|-1.2910700|-0.4141976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336854|AY566846|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331938_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331938_04|-1.2910700|-0.4141976	chr6	  1143794	  1144063	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23585_PI429285431	0.9884684	A	0.90354764	A	1.06062948471238	0	lncRNA	25152-1_{1..716}	lnc-RP11-127H5.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RP11-127H5.1.1-1:1	chr8	106690708	106691423	+	lnc-RP11-127H5.1.1-1	lnc-RP11-127H5.1.1-1:1	ENSG00000254141.1	RP11-642D21.1	ZFPM2	NA	chr8:106680708-106701259	inner
LNCA_21_P0009227	1.6640072	A	2.0922506	A	0.743166100581457	0	lncRNA	TCONS_00025321	NA	NA	NA	NA	XLOC_012127	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012127), lincRNA [TCONS_00025321]"	chr17:16925634-16925693	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_00025321	TCONS_00025321	chr17	 16925634	 16925693	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6063_PI429285431	4.410128	P	4.0171547	P	1.31309682367733	0	lncRNA	5988-2_{3001..3979}	"transcript_id ""ENST00000582008.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000582008.1"" | genecode_v17"	chr18	  5241099	  5242077	+	ENSG00000263753.1	ENST00000582008.1	LINC00667	LINC00667-001	NA	"hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10"	NA	inter
CUST_9629_PI429285431	1.1076189	A	0.9277154	A	1.13280811069641	0	lncRNA	11146-1_{1..419}	lnc-ZNF680-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF680-2:1	chr7	 63498717	 63499135	-	lnc-ZNF680-2	lnc-ZNF680-2:1	XLOC_006469	linc-ZNF479-8	ZNF727	NA	chr7:63505821-63508931	inter
CUST_11790_PI429285431	0.89124435	A	0.893438	A	0.998480633095734	0	lncRNA	13371-1_{1..803}	lnc-FOXD3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXD3-2:1	chr1	 63664103	 63664905	+	lnc-FOXD3-2	lnc-FOXD3-2:1	XLOC_000232	linc-FOXD3-2	NA	NA	NA	inter
CUST_24060_PI429285431	7.9617243	P	7.3995404	P	1.4765026031299	0	lncRNA	25610-1_{1..1361}	lnc-ZNF705D-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF705D-2:1	chr8	 12053400	 12054760	+	lnc-ZNF705D-2	lnc-ZNF705D-2:1	ENSG00000255495.1	AC145124.2	FAM86B1	NA	chr8:12043400-12051624	inter
CUST_19501_PI429285431	5.956708	P	6.038843	P	0.944658640552346	0	lncRNA	21157-1_{1..445}	lnc-VSIG2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VSIG2-1:1	chr11	124616135	124616579	-	lnc-VSIG2-1	lnc-VSIG2-1:1	ENSG00000255045.1	RP11-677M14.2-001	NRGN	NA	chr11:124609829-124617102	inner
CUST_14605_PI429285431	0.89119524	A	1.0842564	A	0.874747681044941	0	lncRNA	16273-1_{1..477}	lnc-AC109315.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC109315.1-1:1	chr18	 49104776	 49105252	+	lnc-AC109315.1-1	lnc-AC109315.1-1:1	XLOC_012676	linc-DCC-2	NA	NA	NA	inter
CUST_1863_PI429285431	9.286488	P	8.76812	P	1.43233405174572	0	lncRNA	1853-1_{1..550}	"transcript_id ""ENST00000503266.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503266.1"" | genecode_v17"	chr4	120720244	120720793	-	ENSG00000250772.1	ENST00000503266.1	RP11-236P13.1	RP11-236P13.1-001	NA	NA	NA	inter
CUST_50731_PI429285431	2.3783975	A	2.897451	A	0.697829503708672	0	lncRNA	54399-1_{1..512}	hg19_lincRNAsTranscripts_TCONS_l2_00003280 range=chr10:120116475-120118695 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003280 range=chr10:120116475-120118695 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	120116475	120116986	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012661	0.90576565	A	0.904162	A	1.00111218349398	0	lncRNA	TCONS_l2_00021101	NA	NA	NA	NA	XLOC_l2_011095	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011095), lincRNA [TCONS_l2_00021101]"	chr4:34260719-34260660	hs|4p15.1	Agilent_HUMAN_G3V2	TCONS_l2_00021101	TCONS_l2_00021101	chr4	 34260660	 34260719	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24651_PI429285431	4.0872855	P	4.4655457	P	0.769364837312252	0	lncRNA	26200-1_{1..566}	lnc-SMARCA5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMARCA5-1:1	chr4	144786156	144786721	+	lnc-SMARCA5-1	lnc-SMARCA5-1:1	ENSG00000246448.2	RP13-578N3.3	GYPE	NA	chr4:144792019-144796225	inter
CUST_50706_PI429285431	6.265627	P	6.2830477	P	0.987997502483295	0	lncRNA	54377-1_{1..810}	hg19_lincRNAsTranscripts_TCONS_l2_00003637 range=chr10:81451255-81460271 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003637 range=chr10:81451255-81460271 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 81451255	 81452064	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42755_PI429285431	10.624638	P	10.734647	P	0.926582281551276	0	lncRNA	45719-1_{1..134}	ENST00000517242 ncrna:snoRNA chromosome:GRCh37:13:45910449:45910582:-1 gene:ENSG00000253051 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517242 ncrna:snoRNA chromosome:GRCh37:13:45910449:45910582:-1 gene:ENSG00000253051 gene_biotype:snoRNA transcript_biotype:snoRNA	chr13	 45910449	 45910582	-	ENSG00000253051	ENST00000517242	NA	NA	TPT1	NA	chr13:45911304-45915297	inter
CUST_37857_PI429285431	6.412951	P	6.3185024	P	1.06765727000171	0	lncRNA	38949-1_{1..1758}	n346388|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1938|NULL|-1.3209700|-0.2653842	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346388|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1938|NULL|-1.3209700|-0.2653842	chr1	211813004	211814761	+	NA	NA	NA	NA	NEK2	NA	chr1:211831598-211838056	inter
LNCA_33_P3393543	2.1856904	A	0.89866936	A	2.44023660824829	0	lncRNA	ENST00000316807	XR_109520	XR_109520	NA	Hs.590968	NA	NA	ENST00000316807	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC400692 (LOC400692), miscRNA [XR_109520]"	chr19:38036489-38036430	hs|19q13.12	Agilent_HUMAN_G3V2	ENST00000316807	ENST00000316807	chr19	 38036430	 38036489	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43729_PI429285431	3.7423198	P	4.243017	P	0.706765145754131	0	lncRNA	48473-1_{1..1604}	"gi|386869232|ref|NR_048550.1| Homo sapiens long intergenic non-protein coding RNA 210 (LINC00210), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|386869232|ref|NR_048550.1| Homo sapiens long intergenic non-protein coding RNA 210 (LINC00210), non-coding RNA"	Chr1	218066242	218067845	+	100885798	NR_048550.1	NA	NA	NA	NA	NA	inter
CUST_25733_PI429285431	5.9064503	P	5.5811257	P	1.25294631428874	0	lncRNA	27260-1_{1..334}	lnc-TTC5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTC5-1:1	chr14	 20790144	 20790477	-	lnc-TTC5-1	lnc-TTC5-1:1	ENSG00000259085.1	RP11-203M5.4	CCNB1IP1	NA	chr14:20780144-20800303	inner
CUST_29715_PI429285431	1.8022804	A	0.8855465	A	1.88783660139881	0	lncRNA	31477-1_{1..997}	n333383|BC005229|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086493|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086493|3.5427000|-0.3421503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333383|BC005229|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086493|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086493|3.5427000|-0.3421503	chr20	 43835674	 43836670	+	NA	NA	NA	NA	SEMG1	NA	chr20:43835638-43838414	inner
CUST_2890_PI429285431	0.892663	A	0.8885231	A	1.00287368114113	0	lncRNA	2871-1_{1..446}	"transcript_id ""ENST00000411946.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411946.1"" | genecode_v17"	chr7	 93701071	 93701516	-	ENSG00000236938.1	ENST00000411946.1	AC003092.2	AC003092.2-001	NA	NA	NA	inter
CUST_19127_PI429285431	3.1435375	P	2.3134553	A	1.77778665186114	0	lncRNA	20807-1_{1..2105}	lnc-GAP43-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-GAP43-7:1	NA	NA	     2104	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001636	7.1059985	P	7.224788	P	0.920960062365629	0	lncRNA	ENST00000433058	NA	NA	NA	NA	XLOC_001230	NA	ENST00000433058	THC2609725	NA	"BROAD Institute lincRNA (XLOC_001230), lincRNA [TCONS_00001845]"	chr1:225636192-225636133	hs|1q42.12	Agilent_HUMAN_G3V2	ENST00000433058	ENST00000433058	chr1	225636133	225636192	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012027	1.6274283	A	1.7005614	A	0.950571399472936	0	lncRNA	ENST00000451027	NA	NA	NA	NA	XLOC_l2_007586	NA	ENST00000451027	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007586), lincRNA [TCONS_l2_00015505]"	chr2:145801948-145802007	hs|2q22.3	Agilent_HUMAN_G3V2	ENST00000451027	ENST00000451027	chr2	145801948	145802007	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35704_PI429285431	8.357753	P	8.113474	P	1.18450065799384	0	lncRNA	37124-1_{1..2160}	n342869|D84361|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5373|NULL|11.1520000|-0.0619671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342869|D84361|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5373|NULL|11.1520000|-0.0619671	chr9	 91628166	 91630325	-	NA	NA	NA	NA	S1PR3	NA	chr9:91618166-91619925	inner
CUST_16929_PI429285431	0.9013823	A	1.0255262	A	0.917548357914294	0	lncRNA	18641-1_{1..376}	lnc-AIG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AIG1-1:1	chr6	143704350	143704725	+	lnc-AIG1-1	lnc-AIG1-1:1	XLOC_005488	linc-PEX3	NA	NA	NA	inter
CUST_15919_PI429285431	2.418821	A	1.5375675	A	1.84197502458428	0	lncRNA	17614-1_{1..548}	lnc-CMPK2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMPK2-4:2	chr2	  6790238	  6790785	-	lnc-CMPK2-4	lnc-CMPK2-4:2	XLOC_001964	linc-RNASEH1-13	NA	NA	NA	inter
CUST_41432_PI429285431	1.1965517	A	1.7445737	A	0.68395722204528	0	lncRNA	42598-1_{1..75}	ENST00000580266 ncrna:miRNA chromosome:GRCh37:X:1412811:1412885:1 gene:ENSG00000265658 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580266 ncrna:miRNA chromosome:GRCh37:X:1412811:1412885:1 gene:ENSG00000265658 gene_biotype:miRNA transcript_biotype:miRNA	chrX	  1412811	  1412885	+	ENSG00000265658	ENST00000580266	NA	NA	CSF2RA	NA	chrX:1402811-1422885	inner
CUST_10710_PI429285431	9.396292	P	9.01655	P	1.3011091547187	0	lncRNA	12246-1_{1..1892}	lnc-CTC-236F12.4.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTC-236F12.4.1-1:3	chr5	 55753498	 55755389	-	lnc-CTC-236F12.4.1-1	lnc-CTC-236F12.4.1-1:3	XLOC_004829	linc-ANKRD55-6	LOC100509780	NA	chr5:55761428-55761784	inter
CUST_27875_PI429285431	0.8925609	A	0.8882581	A	1.00298692568806	0	lncRNA	29468-1_{1..427}	n325111|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331757|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331757|-1.1387100|-0.5077297	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325111|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331757|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331757|-1.1387100|-0.5077297	chr2	229256496	229256922	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1498_PI429285431	0.90390015	A	1.1079527	A	0.868108606269568	0	lncRNA	1485-1_{1..580}	"transcript_id ""ENST00000492731.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000492731.1"" | genecode_v17"	chr3	151354962	151355541	+	ENSG00000241151.1	ENST00000492731.1	RP11-454C18.1	RP11-454C18.1-001	NA	NA	NA	inter
CUST_41506_PI429285431	1.3504086	A	1.3553991	A	0.996546824965671	0	lncRNA	42729-1_{1..83}	ENST00000401241 ncrna:miRNA chromosome:GRCh37:X:135633037:135633119:1 gene:ENSG00000216060 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401241 ncrna:miRNA chromosome:GRCh37:X:135633037:135633119:1 gene:ENSG00000216060 gene_biotype:miRNA transcript_biotype:miRNA	chrX	135633037	135633119	+	ENSG00000216060	ENST00000401241	NA	NA	VGLL1	NA	chrX:135623037-135638966	inner
CUST_1299_PI429285431	1.0649137	A	1.2504462	A	0.879324456592333	0	lncRNA	1289-1_{1..377}	"transcript_id ""ENST00000449023.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449023.1"" | genecode_v17"	chr3	  9298443	  9298819	+	ENSG00000235830.1	ENST00000449023.1	SRGAP3-AS4	SRGAP3-AS4-001	SRGAP3	NA	chr3:9288443-9291311	inter
CUST_50388_PI429285431	0.8961715	A	0.90096605	A	0.996682187330305	0	lncRNA	54095-1_{1..1067}	hg19_lincRNAsTranscripts_TCONS_l2_00030370 range=chrX:135991644-136104192 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030370 range=chrX:135991644-136104192 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	135991644	135992710	+	NA	NA	NA	NA	GPR101	NA	chrX:136112307-136113833	inter
LNCA_21_P0008591	0.90220296	A	0.89575446	A	1.00447976386927	0	lncRNA	TCONS_00023308	NA	NA	NA	NA	XLOC_011178	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011178), lincRNA [TCONS_00023308]"	chr15:24638724-24638783	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023308	TCONS_00023308	chr15	 24638724	 24638783	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47981_PI429285431	1.294393	A	0.88516766	A	1.32797256324626	0	lncRNA	51870-1_{1..3000}	"gi|410172889|ref|XR_172042.1| PREDICTED: Homo sapiens uncharacterized LOC101060712 (LOC101060712), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172889|ref|XR_172042.1| PREDICTED: Homo sapiens uncharacterized LOC101060712 (LOC101060712), misc_RNA"	NA	NA	NA	NA	NA	XR_172042.1	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50"	NA	Unknown
LNCA_21_P0006570	6.214887	P	6.222198	P	0.994945219580581	0	lncRNA	TCONS_00017455	NA	NA	NA	NA	XLOC_008050	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008050), lincRNA [TCONS_00017455]"	chrX:114961240-114961299	hs|Xq23	Agilent_HUMAN_G3V2	TCONS_00017455	TCONS_00017455	chrX	114961240	114961299	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44229_PI429285431	0.888865	A	0.886115	A	1.00190797261436	0	lncRNA	48878-1_{1..851}	"gi|397139040|ref|XR_158769.1| PREDICTED: Homo sapiens uncharacterized LOC100506907, transcript variant 3 (LOC100506907), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139040|ref|XR_158769.1| PREDICTED: Homo sapiens uncharacterized LOC100506907, transcript variant 3 (LOC100506907), misc_RNA"	NA	NA	NA	NA	NA	XR_158769.1	NA	NA	NA	NA	NA	Unknown
CUST_49877_PI429285431	4.2938447	P	4.471666	P	0.884037025883078	0	lncRNA	53628-1_{1..324}	hg19_lincRNAsTranscripts_TCONS_l2_00026048 range=chr7:76633346-76634911 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026048 range=chr7:76633346-76634911 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 76633346	 76633669	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5485_PI429285431	5.3602643	P	5.882034	P	0.696516917706857	0	lncRNA	5418-1_{1..883}	"transcript_id ""ENST00000483578.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000483578.1"" | genecode_v17"	chr16	 30751988	 30752870	+	ENSG00000260899.1	ENST00000483578.1	RP11-2C24.4	RP11-2C24.4-001	PHKG2	NA	chr16:30759620-30772497	inner
CUST_3269_PI429285431	0.91054195	A	1.1292056	A	0.859361083083493	0	lncRNA	3247-1_{1..566}	"transcript_id ""ENST00000522778.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522778.1"" | genecode_v17"	chr8	112195521	112196086	-	ENSG00000253103.1	ENST00000522778.1	RP11-946L20.4	RP11-946L20.4-002	NA	NA	NA	inter
CUST_18133_PI429285431	3.2517002	P	3.457795	P	0.866880598613217	0	lncRNA	19868-1_{1..565}	lnc-C1orf132-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-C1orf132-2:1	chr1	208052225	208052789	-	lnc-C1orf132-2	lnc-C1orf132-2:1	XLOC_001182	linc-YOD1-3	CD34	NA	chr1:208059883-208062418	inter
CUST_25487_PI429285431	1.1775858	A	0.926112	A	1.19042258252837	0	lncRNA	27017-1_{1..695}	lnc-TUBB2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUBB2A-1:1	chr6	  3152753	  3153447	-	lnc-TUBB2A-1	lnc-TUBB2A-1:1	ENSG00000228170.1	RP1-40E16.11	BPHL	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_BPHL:range=chr6:3118975-31528095'pad=0,hg19_refFlat_BPHL:range=chr6:3118975-31528095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10chr6:3142753-3153432"	NA	inter
CUST_25674_PI429285431	2.235847	A	2.6040497	A	0.774747070625213	0	lncRNA	27203-1_{1..562}	lnc-DHRS7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHRS7-1:1	chr14	 60715358	 60715919	-	lnc-DHRS7-1	lnc-DHRS7-1:1	ENSG00000254718.2	CTD-2184C24.2	PPM1A	NA	chr14:60712470-60725483	inner
CUST_2013_PI429285431	0.90026814	A	0.8898635	A	1.00723801560071	0	lncRNA	2004-1_{1..699}	"transcript_id ""ENST00000512464.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512464.1"" | genecode_v17"	chr4	188437307	188438005	-	ENSG00000251490.1	ENST00000512464.1	RP11-237D3.1	RP11-237D3.1-001	NA	NA	NA	inter
CUST_40442_PI429285431	2.9901607	P	1.6076304	A	2.60725248592153	0	lncRNA	41220-1_{1..3000}	n409339|NR_033699|lncRNA|Homosapiens||RefGeneNoncode|NR_033699||12.2622000|-0.3721171	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409339|NR_033699|lncRNA|Homosapiens||RefGeneNoncode|NR_033699||12.2622000|-0.3721171	chrX	146993468	146996467	+	NA	NA	NA	NA	FMR1	NA	chrX:146993469-147032647	inter
CUST_49970_PI429285431	13.322754	P	13.317092	P	1.00393231066096	0	lncRNA	53717-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00026970 range=chr7:149714423-149745413 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026970 range=chr7:149714423-149745413 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	149717423	149720422	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3481_PI429285431	2.1882322	A	2.2431152	A	0.962672510963329	0	lncRNA	3452-1_{1..2745}	"transcript_id ""ENST00000423719.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423719.1"" | genecode_v17"	chr9	 93922051	 93924795	+	ENSG00000235641.2	ENST00000423719.1	LINC00484	LINC00484-001	NA	NA	NA	inter
CUST_10358_PI429285431	1.6716313	A	2.4655714	A	0.576766749109217	0	lncRNA	11884-1_{1..3000}	lnc-AC114947.1.1-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC114947.1.1-2:8	chr5	 43080002	 43083001	+	lnc-AC114947.1.1-2	lnc-AC114947.1.1-2:8	XLOC_004366	linc-ZNF131-1	NA	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60"	NA	inter
CUST_26844_PI429285431	3.4881577	P	4.107489	P	0.650972588494395	0	lncRNA	28358-1_{1..446}	n323916|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055669|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055669|-0.9138780|-0.2006355	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323916|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055669|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055669|-0.9138780|-0.2006355	chrX	  5581463	  5581908	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38056_PI429285431	0.89981604	A	2.0565362	A	0.448531073103631	0	lncRNA	39133-1_{1..343}	n377627|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030015||-1.1193000|-0.2234667	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377627|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030015||-1.1193000|-0.2234667	chr6	  1056330	  1056672	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90"	NA	inter
CUST_24154_PI429285431	4.1825294	P	4.170045	P	1.00869107665797	0	lncRNA	25706-1_{1..325}	lnc-C12orf62-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C12orf62-1:1	chr12	 50623573	 50623897	+	lnc-C12orf62-1	lnc-C12orf62-1:1	ENSG00000257256.1	RP3-405J10.4	LIMA1	NA	chr12:50613573-50633767	inner
CUST_47462_PI429285431	5.7473073	P	5.7451377	P	1.0015049834756	0	lncRNA	51489-1_{1..3000}	"gi|310124102|ref|XR_109748.1| PREDICTED: Homo sapiens uncharacterized LOC100286925 (LOC100286925), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310124102|ref|XR_109748.1| PREDICTED: Homo sapiens uncharacterized LOC100286925 (LOC100286925), misc_RNA"	NA	NA	NA	NA	NA	XR_109748.1	NA	NA	NA	"hg19_refFlat_PPM1F:range=chr22:22277465-223004205'pad=0,hg19_refFlat_PPM1F:range=chr22:22277465-223004205'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40"	NA	Unknown
CUST_18850_PI429285431	1.1697615	A	1.2858901	A	0.922660244228081	0	lncRNA	20544-1_{1..503}	lnc-CD180-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CD180-2:2	chr5	 66771243	 66771745	-	lnc-CD180-2	lnc-CD180-2:2	ENSG00000250978	RP11-357D18.1	NA	NA	NA	inter
CUST_43535_PI429285431	4.8382325	P	3.5859582	P	2.38216657765405	0	lncRNA	48318-2_{3001..3761}	"gi|311893317|ref|NR_037185.1| Homo sapiens PRP38 pre-mRNA processing factor 38 (yeast) domain containing B (PRPF38B), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|311893317|ref|NR_037185.1| Homo sapiens PRP38 pre-mRNA processing factor 38 (yeast) domain containing B (PRPF38B), transcript variant 2, non-coding RNA"	Chr1	109237935	109238695	+	55119	NR_037185.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008373	0.9121478	A	0.90236944	A	1.00680086422287	0	lncRNA	TCONS_00022589	NA	NA	NA	NA	XLOC_010898	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010898), lincRNA [TCONS_00022589]"	chr14:88556536-88557720	hs|14q31.3	Agilent_HUMAN_G3V2	TCONS_00022589	TCONS_00022589	chr14	 88556536	 88557720	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010540	0.91170377	A	1.6310757	A	0.607361796541446	0	lncRNA	TCONS_l2_00000470	NA	NA	NA	NA	XLOC_l2_000339	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000339), lincRNA [TCONS_l2_00000470]"	chr1:107383778-107407857	hs|1p13.3	Agilent_HUMAN_G3V2	TCONS_l2_00000470	TCONS_l2_00000470	chr1	107383778	107407857	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32523_PI429285431	2.3613868	A	2.625216	A	0.832874368656045	0	lncRNA	34190-1_{1..374}	n339130|AJ002785|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1560|NULL|-1.0917200|-0.3607409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339130|AJ002785|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1560|NULL|-1.0917200|-0.3607409	chr16	 24219425	 24219798	-	NA	NA	NA	NA	PRKCB	NA	chr16:24209425-24229799	inner
CUST_41_PI429285431	2.2339325	A	1.8632941	A	1.29292482998068	0	lncRNA	40-1_{1..559}	"transcript_id ""ENST00000529229.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000529229.1"" | genecode_v17"	chr11	119580630	119581188	+	ENSG00000255247.1	ENST00000529229.1	CTD-2523D13.1	CTD-2523D13.1-001	PVRL1	NA	chr11:119570630-119594635	inner
LNCA_21_P0013078	14.285028	P	13.568902	P	1.64276486864654	0	lncRNA	TCONS_l2_00024711	NA	NA	NA	NA	XLOC_l2_012953	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012953), lincRNA [TCONS_l2_00024711]"	chr6:31349758-31349699	hs|6p21.33	Agilent_HUMAN_G3V2	TCONS_l2_00024711	TCONS_l2_00024711	chr6	 31349699	 31349758	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22489_PI429285431	1.240622	A	0.9592943	A	1.21531281197135	0	lncRNA	24076-1_{1..829}	lnc-SDR42E1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SDR42E1-1:1	chr16	 82173194	 82174022	-	lnc-SDR42E1-1	lnc-SDR42E1-1:1	ENSG00000261235.1	RP11-510J16.5	MPHOSPH6	"hg19_refFlat_HSD17B2:range=chr16:82069030-821320415'pad=0,hg19_refFlat_HSD17B2:range=chr16:82069030-821320415'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80chr16:82181767-82183236"	NA	inter
CUST_24175_PI429285431	3.392858	P	2.4295626	A	1.94975844502485	0	lncRNA	25726-1_{1..469}	lnc-AC012123.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC012123.1.1-1:1	chr18	 30420341	 30420809	+	lnc-AC012123.1.1-1	lnc-AC012123.1.1-1:1	ENSG00000263765.1	RP11-746B8.1	NA	NA	NA	inter
CUST_43309_PI429285431	2.9991076	A	1.9348543	A	2.09108730912334	0	lncRNA	48140-1_{1..483}	ENST00000587768 havana:lincRNA chromosome:GRCh37:19:34125111:34125593:1 gene:ENSG00000267103 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000587768 havana:lincRNA chromosome:GRCh37:19:34125111:34125593:1 gene:ENSG00000267103 gene_biotype:lincRNA transcript_biotype:lincRNA	chr19	 34125111	 34125593	+	ENSG00000267103	ENST00000587768	NA	NA	CHST8	NA	chr19:34115111-34135593	inner
CUST_13586_PI429285431	8.566128	P	8.765453	P	0.87095796687176	0	lncRNA	15227-1_{1..3000}	lnc-FGFR1OP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGFR1OP-1:1	chr6	167316544	167319543	+	lnc-FGFR1OP-1	lnc-FGFR1OP-1:1	XLOC_005539	linc-FGFR1OP-1	NA	NA	NA	inter
CUST_32259_PI429285431	2.2452445	A	1.1912258	A	2.07630545367627	0	lncRNA	33949-1_{1..3000}	n338835|AL833464|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1258|NULL|-1.1410700|-0.3350823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338835|AL833464|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1258|NULL|-1.1410700|-0.3350823	chr12	   383122	   386121	-	NA	NA	NA	NA	KDM5A	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.62;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90chr12:389223-396289"	NA	inter
LNCA_19_P00317732	3.1067972	P	3.40703	P	0.812121338095882	0	lncRNA	AK090719	NA	AK090719	NA	Hs.550850	XLOC_009544	NA	NA	THC2491896	NA	"BROAD Institute lincRNA (XLOC_009544), lincRNA [TCONS_00019750]"	chr11:107182917-107182858	hs|11q22.3	Agilent_HUMAN_G3V2	AK090719	AK090719	chr11	107182858	107182917	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51952_PI429285431	6.771044	P	7.290371	P	0.697697224693267	0	lncRNA	55495-1_{1..684}	hg19_lincRNAsTranscripts_TCONS_l2_00016220 range=chr20:25965779-26001287 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016220 range=chr20:25965779-26001287 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 25965779	 25966462	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21889_PI429285431	8.611525	P	8.70631	P	0.936411787342553	0	lncRNA	23498-1_{1..563}	lnc-AC021066.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC021066.1-3:1	chr12	 53007163	 53007725	+	lnc-AC021066.1-3	lnc-AC021066.1-3:1	ENSG00000257495.1	RP11-641A6.2	KRT73	"hg19_refFlat_KRT73:range=chr12:53001980-530123085'pad=0,hg19_refFlat_KRT73:range=chr12:53001980-530123085'pad=0 3'pad=0 strand=- repeatMasking=none,-96.50chr12:53001354-53012343"	NA	inner
CUST_33374_PI429285431	2.4962525	A	2.84231	A	0.786731088803624	0	lncRNA	34953-1_{1..1824}	n340091|BC029259|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2546|NULL|-0.6946180|-0.1482753	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340091|BC029259|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2546|NULL|-0.6946180|-0.1482753	chr10	 81164058	 81165881	-	NA	NA	NA	NA	ZCCHC24	NA	chr10:81154058-81175853	inner
CUST_14506_PI429285431	0.9059033	A	0.9119198	A	0.995838363697186	0	lncRNA	16172-1_{1..3000}	lnc-CLLU1.1-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLLU1.1-9:1	chr12	 91073412	 91076411	+	lnc-CLLU1.1-9	lnc-CLLU1.1-9:1	XLOC_009831	linc-CLLU1-4	NA	NA	NA	inter
CUST_19887_PI429285431	2.5101347	A	2.80018	A	0.817876377190259	0	lncRNA	21543-1_{1..557}	lnc-AL353997.5.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL353997.5.1-1:5	chr17	 18324165	 18324721	+	lnc-AL353997.5.1-1	lnc-AL353997.5.1-1:5	ENSG00000205266.5	AL353997.3	LGALS9C	NA	chr17:18330120-18334553	inter
CUST_43715_PI429285431	0.9241025	A	0.943115	A	0.986907994942621	0	lncRNA	48462-1_{1..804}	"gi|310124618|ref|XR_110788.1| PREDICTED: Homo sapiens uncharacterized LOC100505650, transcript variant 2 (LOC100505650), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124618|ref|XR_110788.1| PREDICTED: Homo sapiens uncharacterized LOC100505650, transcript variant 2 (LOC100505650), misc_RNA"	NA	NA	NA	NA	NA	XR_110788.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70"	NA	Unknown
CUST_2407_PI429285431	0.920912	A	0.921363	A	0.999687439478788	0	lncRNA	2399-1_{1..548}	"transcript_id ""ENST00000518103.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518103.1"" | genecode_v17"	chr5	157683145	157683692	+	ENSG00000253424.1	ENST00000518103.1	CTC-436K13.3	CTC-436K13.3-001	NA	NA	NA	inter
CUST_29697_PI429285431	3.507499	P	3.2266839	P	1.21488107922804	0	lncRNA	31459-1_{1..956}	n333362|BC001876|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086102_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086102_03|0.1026580|-0.2397417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333362|BC001876|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086102_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086102_03|0.1026580|-0.2397417	chr6	  3110288	  3111243	+	NA	NA	NA	NA	BPHL	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40chr6:3118926-3121244"	NA	inner
CUST_47899_PI429285431	0.89390033	A	0.89528286	A	0.999042162248174	0	lncRNA	51792-1_{1..707}	"gi|410171840|ref|XR_171413.1| PREDICTED: Homo sapiens uncharacterized LOC100507274, transcript variant 3 (LOC100507274), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|410171840|ref|XR_171413.1| PREDICTED: Homo sapiens uncharacterized LOC100507274, transcript variant 3 (LOC100507274), misc_RNA"	NA	NA	NA	NA	NA	XR_171413.1	NA	NA	NA	NA	NA	Unknown
CUST_36109_PI429285431	1.7463393	A	2.0112436	A	0.83225393976747	0	lncRNA	37401-1_{1..2539}	n344686|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_235|NULL|-1.3128200|-0.1907583	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344686|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_235|NULL|-1.3128200|-0.1907583	chr14	 77404379	 77406917	-	NA	NA	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RPLP1:range=chr15:69745288-697478465'pad=0,hg19_refFlat_RPLP1:range=chr15:69745288-697478465'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00"	NA	inter
CUST_25257_PI429285431	0.89203924	A	0.8952093	A	0.997805094185109	0	lncRNA	26787-1_{1..365}	lnc-ZBTB25-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZBTB25-4:2	chr14	 65063180	 65063544	-	lnc-ZBTB25-4	lnc-ZBTB25-4:2	ENSG00000259076.1	RP11-973N13.3	C14orf50	NA	chr14:65053180-65056096	inter
LNCA_21_P0014317	6.5985312	P	5.047638	P	2.92998483992802	0	lncRNA	XR_109253	XR_109253	XR_109253	NA	NA	LOC100505487	uncharacterized LOC100505487	NA	THC2491430	NA	"PREDICTED: Homo sapiens hypothetical LOC100505487 (LOC100505487), miscRNA [XR_109253]"	chr16:9206972-9207031	hs|16p13.2	Agilent_HUMAN_G3V2	XR_109253	XR_109253	chr16	  9206972	  9207031	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46105_PI429285431	1.0211602	A	0.97654045	A	1.03141129520695	0	lncRNA	50368-1_{1..3000}	"gi|333805624|ref|NR_038265.1| Homo sapiens protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 (PPFIA2), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333805624|ref|NR_038265.1| Homo sapiens protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 (PPFIA2), transcript variant 8, non-coding RNA"	Chr12	 81652045	 81655044	-	8499	NR_038265.1	NA	NA	NA	NA	NA	inter
CUST_34576_PI429285431	0.9060162	A	1.3879647	A	0.716009929607972	0	lncRNA	36036-1_{1..3000}	n341461|AL833160|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3931|NULL|-1.1175300|-0.1949417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341461|AL833160|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3931|NULL|-1.1175300|-0.1949417	chr8	 22536525	 22539524	-	NA	NA	NA	NA	BIN3	NA	chr8:22526525-22526661	inter
CUST_46883_PI429285431	3.0996017	A	2.935349	A	1.12058547684391	0	lncRNA	51007-1_{1..825}	"gi|407971024|ref|NR_073199.1| Homo sapiens long intergenic non-protein coding RNA 483 (LINC00483), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|407971024|ref|NR_073199.1| Homo sapiens long intergenic non-protein coding RNA 483 (LINC00483), non-coding RNA"	Chr17	 48838395	 48839219	-	55018	NR_073199.1	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.11;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50"	NA	inter
CUST_10062_PI429285431	7.736667	P	7.82087	P	0.943305510097064	0	lncRNA	11587-1_{1..1759}	lnc-IL6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL6-1:1	chr7	 22872773	 22874531	+	lnc-IL6-1	lnc-IL6-1:1	XLOC_006010	linc-KLHL7-2	NA	NA	NA	inter
CUST_40191_PI429285431	1.1706071	A	0.8978402	A	1.2081226280961	0	lncRNA	41025-1_{1..3000}	n407992|NR_027712|lncRNA|Homosapiens||RefGeneNoncode|NR_027712||6.0271400|-0.1853573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407992|NR_027712|lncRNA|Homosapiens||RefGeneNoncode|NR_027712||6.0271400|-0.1853573	chr6	  7986334	  7989333	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40263_PI429285431	0.88808644	A	1.8187962	A	0.524600191733855	0	lncRNA	41073-2_{3001..4704}	n408193|NR_028337|lncRNA|Homosapiens||RefGeneNoncode|NR_028337||-0.5638370|-0.1405967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408193|NR_028337|lncRNA|Homosapiens||RefGeneNoncode|NR_028337||-0.5638370|-0.1405967	chr17	 75878082	 75879785	-	NA	NA	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20"	NA	inter
LNCA_21_P0007575	0.9063383	A	0.99702674	A	0.939074525075744	0	lncRNA	TCONS_00020461	NA	NA	NA	NA	XLOC_009792	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009792), lincRNA [TCONS_00020461]"	chr12:68326945-68327004	hs|12q15	Agilent_HUMAN_G3V2	TCONS_00020461	TCONS_00020461	chr12	 68326945	 68327004	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24527_PI429285431	10.85517	P	10.333193	P	1.43592161842547	0	lncRNA	26078-1_{1..2337}	lnc-LRRC36-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC36-1:1	chr16	 67466595	 67468931	+	lnc-LRRC36-1	lnc-LRRC36-1:1	ENSG00000262839.1	RP11-297D21.3	ATP6V0D1	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.90chr16:67471917-67478931"	NA	inner
CUST_5719_PI429285431	5.845337	P	5.812662	P	1.02290701061644	0	lncRNA	5643-1_{1..548}	"transcript_id ""ENST00000585275.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585275.1"" | genecode_v17"	chr17	  8241015	  8241562	+	ENSG00000266279.1	ENST00000585275.1	RP11-849F2.4	RP11-849F2.4-001	ODF4	NA	chr17:8243188-8249363	inter
CUST_31620_PI429285431	6.254463	P	4.92749	P	2.50875745727237	0	lncRNA	33376-1_{1..2636}	n338140|AK092074|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|528|NULL|-0.7770390|-0.2124585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338140|AK092074|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|528|NULL|-0.7770390|-0.2124585	chr1	112265425	112268060	-	NA	NA	NA	NA	RAP1A	NA	chr1:112255425-112256101	inner
CUST_5486_PI429285431	1.7038122	A	1.1077704	A	1.51156372305213	0	lncRNA	5419-1_{1..1201}	"transcript_id ""ENST00000576745.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000576745.1"" | genecode_v17"	chr16	 31237281	 31238481	+	ENSG00000261925.1	ENST00000576745.1	RP11-388M20.9	RP11-388M20.9-001	PYDC1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60chr16:31227283-31228398"	NA	inter
CUST_25793_PI429285431	1.4007925	A	0.9779943	A	1.34052506970502	0	lncRNA	27314-1_{1..459}	lnc-DRD5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DRD5-2:1	chr4	 10011102	 10011560	+	lnc-DRD5-2	lnc-DRD5-2:1	ENSG00000250413.1	RP11-448G15.1	SLC2A9	NA	chr4:10001102-10021349	inner
CUST_7374_PI429285431	5.0593367	P	4.780722	P	1.21302955365626	0	lncRNA	9020-1_{1..560}	lnc-TCF24-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TCF24-2:5	chr8	 67837672	 67838231	-	lnc-TCF24-2	lnc-TCF24-2:5	ENSG00000245910	SNHG6	C8orf45	NA	chr8:67827672-67834283	inter
CUST_31604_PI429285431	6.425117	P	6.5484986	P	0.918033305817368	0	lncRNA	33360-1_{1..1123}	n338114|BC031940|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|502|NULL|-1.1528900|-0.1995561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338114|BC031940|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|502|NULL|-1.1528900|-0.1995561	chr15	 89878283	 89879405	+	NA	NA	NA	NA	POLG	NA	chr15:89868283-89878026	inter
CUST_9942_PI429285431	5.5321074	P	5.7645054	P	0.85121884741691	0	lncRNA	11465-1_{1..395}	lnc-CELF4-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CELF4-4:2	chr18	 36308161	 36308555	-	lnc-CELF4-4	lnc-CELF4-4:2	XLOC_012822	linc-CELF4-9	NA	NA	NA	inter
CUST_11804_PI429285431	1.3040545	A	1.2700539	A	1.02384732623449	0	lncRNA	13385-1_{1..1664}	lnc-FAM195B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM195B-1:1	chr17	 79759995	 79761658	-	lnc-FAM195B-1	lnc-FAM195B-1:1	XLOC_012588	linc-ARL16-1	GCGR	NA	chr17:79762010-79771593	inter
CUST_49042_PI429285431	0.8983689	A	1.2571244	A	0.7798369938863	0	lncRNA	52870-2_{3001..4059}	hg19_lincRNAsTranscripts_TCONS_l2_00021330 range=chr4:144497028-144617731 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021330 range=chr4:144497028-144617731 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	144500028	144501086	-	NA	NA	NA	NA	FREM3	NA	chr4:144498560-144621828	inner
LNCA_24_P341476	12.166116	P	11.619622	P	1.46053203269051	0	lncRNA	XR_132614	XR_132614	XR_132614	   729313	NA	LOC729313	peptidylprolyl isomerase A (cyclophilin A) pseudogene	NA	THC2551566	NA	"PREDICTED: Homo sapiens peptidyl-prolyl cis-trans isomerase A-like (LOC729313), miscRNA [XR_132614]"	chr16:81509994-81509935	hs|16q23.2	Agilent_HUMAN_G3V2	XR_132614	XR_132614	chr16	 81509935	 81509994	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2134_PI429285431	0.8975451	A	0.90061414	A	0.997874964668389	0	lncRNA	2125-1_{1..604}	"transcript_id ""ENST00000503382.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503382.2"" | genecode_v17"	chr5	 37840540	 37841143	+	ENSG00000248587.2	ENST00000503382.2	GDNF-AS1	GDNF-AS1-002	GDNF	NA	chr5:37830540-37839782	inter
CUST_10388_PI429285431	0.894303	A	1.7824124	A	0.540321726706676	0	lncRNA	11916-1_{1..841}	lnc-AC024563.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC024563.1-2:1	chr19	 22778586	 22779426	-	lnc-AC024563.1-2	lnc-AC024563.1-2:1	XLOC_013268	linc-ZNF98-1	NA	NA	NA	inter
CUST_7632_PI429285431	0.8973238	A	0.8929772	A	1.00301737667941	0	lncRNA	9264-1_{1..2116}	lnc-ANGPTL2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANGPTL2-3:1	chr9	129249185	129251300	-	lnc-ANGPTL2-3	lnc-ANGPTL2-3:1	ENSG00000248193	ENST00000512935	FAM125B	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr9:129239185-129261281"	NA	inner
CUST_49337_PI429285431	1.1430775	A	0.8885042	A	1.19298284719921	0	lncRNA	53149-2_{3001..5171}	hg19_lincRNAsTranscripts_TCONS_l2_00023773 range=chr5:70423728-70510559 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023773 range=chr5:70423728-70510559 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 70426728	 70428898	-	NA	NA	NA	NA	LOC100652870	"hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70chr5:70519357-70519728"	NA	inter
CUST_22929_PI429285431	1.6820095	A	1.7171131	A	0.975961674405209	0	lncRNA	24505-1_{1..1388}	lnc-AP002478.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP002478.1-1:1	chr18	  3602998	  3604385	+	lnc-AP002478.1-1	lnc-AP002478.1-1:1	ENSG00000262001.1	RP11-874J12.1	DLGAP1	NA	chr18:3592998-3614385	inner
CUST_29373_PI429285431	3.7766783	P	3.67417	P	1.07363849128308	0	lncRNA	31125-1_{1..683}	n332640|AB027439|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000058897|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000058897|-0.9561700|-0.1233963	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332640|AB027439|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000058897|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000058897|-0.9561700|-0.1233963	chr14	106322009	106322691	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006706	0.8974054	A	0.8919184	A	1.00381054029767	0	lncRNA	ENST00000433085	NA	NA	NA	NA	XLOC_008629	NA	ENST00000433085	NA	NA	"BROAD Institute lincRNA (XLOC_008629), lincRNA [TCONS_00017871]"	chr10:116755281-116756276	hs|10q25.3	Agilent_HUMAN_G3V2	ENST00000433085	ENST00000433085	chr10	116755281	116756276	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39817_PI429285431	0.9716188	A	0.89926237	A	1.05143264232018	0	lncRNA	40727-1_{1..388}	n406279|NR_003935|lncRNA|Homosapiens||RefGeneNoncode|NR_003935||1.4933200|-0.4367830	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406279|NR_003935|lncRNA|Homosapiens||RefGeneNoncode|NR_003935||1.4933200|-0.4367830	chr4	 56686236	 56686623	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44328_PI429285431	0.9020187	A	0.8928257	A	1.00639244706362	0	lncRNA	48958-2_{3001..6000}	"gi|223468604|ref|NR_026787.1| Homo sapiens leishmanolysin-like (metallopeptidase M8 family) (LMLN), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|223468604|ref|NR_026787.1| Homo sapiens leishmanolysin-like (metallopeptidase M8 family) (LMLN), transcript variant 4, non-coding RNA"	Chr3	197690071	197693070	+	89782	NR_026787.1	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00"	NA	inter
CUST_42292_PI429285431	3.8114626	P	4.1749187	P	0.777300257887701	0	lncRNA	44907-1_{1..97}	ENST00000384567 ncrna:snoRNA chromosome:GRCh37:17:33900676:33900772:1 gene:ENSG00000207297 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384567 ncrna:snoRNA chromosome:GRCh37:17:33900676:33900772:1 gene:ENSG00000207297 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 33900676	 33900772	+	ENSG00000207297	ENST00000384567	NA	NA	PEX12	NA	chr17:33901814-33905656	inter
CUST_8063_PI429285431	1.4352882	A	1.8473268	A	0.75156063039748	0	lncRNA	9670-1_{1..427}	lnc-RASA1-7:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASA1-7:12	chr5	 88370913	 88371339	+	lnc-RASA1-7	lnc-RASA1-7:12	ENSG00000248309	CTC-454M9.1	NA	NA	NA	inter
CUST_33695_PI429285431	4.7042627	P	4.739225	P	0.976057266428575	0	lncRNA	35256-1_{1..751}	n340471|AL832295|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2932|NULL|-1.2453200|-0.5074715	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340471|AL832295|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2932|NULL|-1.2453200|-0.5074715	chr5	 57807420	 57808170	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28369_PI429285431	0.89469945	A	0.8953899	A	0.999521531031985	0	lncRNA	30020-1_{1..376}	n325682|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045365|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045365|-1.1351000|-0.2761496	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325682|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045365|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045365|-1.1351000|-0.2761496	chr13	 78259454	 78259829	-	NA	NA	NA	NA	SLAIN1	NA	chr13:78271989-78274443	inter
CUST_2798_PI429285431	7.3085456	P	7.888776	P	0.668856951665309	0	lncRNA	2782-1_{1..1005}	"transcript_id ""ENST00000440034.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440034.1"" | genecode_v17"	chr7	 33835080	 33836084	-	ENSG00000236494.1	ENST00000440034.1	RP11-89N17.4	RP11-89N17.4-002	NA	NA	NA	inter
CUST_50974_PI429285431	1.6641458	A	1.1737275	A	1.40485214439214	0	lncRNA	54616-1_{1..368}	hg19_lincRNAsTranscripts_TCONS_l2_00005840 range=chr12:96983231-96988177 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005840 range=chr12:96983231-96988177 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 96983231	 96983598	+	NA	NA	NA	NA	C12orf55	NA	chr12:96973231-96998177	inter
CUST_46492_PI429285431	6.3291216	P	6.825212	P	0.70902558854624	0	lncRNA	50685-1_{1..806}	"gi|338827620|ref|NR_040054.1| Homo sapiens IQCH antisense RNA 1 (IQCH-AS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338827620|ref|NR_040054.1| Homo sapiens IQCH antisense RNA 1 (IQCH-AS1), transcript variant 3, non-coding RNA"	Chr15	 67807258	 67808063	-	100506686	NR_040054.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_C15orf61:range=chr15:67813587-678188835'pad=0,hg19_refFlat_C15orf61:range=chr15:67813587-678188835'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.00"	NA	inter
CUST_36535_PI429285431	6.9719653	P	7.2397447	P	0.830597019533009	0	lncRNA	37733-1_{1..1432}	n345035|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_584|NULL|-1.3173800|-0.2253379	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345035|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_584|NULL|-1.3173800|-0.2253379	chr9	111363561	111364992	-	NA	NA	NA	NA	NA	"hg19_refFlat_RPL36:range=chr19:5690519-56916325'pad=0,hg19_refFlat_RPL36:range=chr19:5690519-56916325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30"	NA	inter
CUST_6375_PI429285431	4.0767765	P	4.1298385	P	0.963888383626587	0	lncRNA	6301-1_{1..476}	"transcript_id ""ENST00000598141.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598141.1"" | genecode_v17"	chr19	 17600610	 17601085	-	ENSG00000269439.1	ENST00000598141.1	CTD-3131K8.2	CTD-3131K8.2-004	SLC27A1	NA	chr19:17590610-17613198	inner
LNCA_21_P0003940	4.3252244	P	4.2260585	P	1.0711539914461	0	lncRNA	BC039391	NA	BC039391	NA	Hs.633720	XLOC_004864	NA	NA	THC2524645	NA	"BROAD Institute lincRNA (XLOC_004864), lincRNA [TCONS_00009286]"	chr5:68484887-68484828	hs|5q13.2	Agilent_HUMAN_G3V2	BC039391	BC039391	chr5	 68484828	 68484887	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13699_PI429285431	0.9122861	A	1.2510383	A	0.790724921332778	0	lncRNA	15339-1_{1..467}	lnc-FAM76B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM76B-1:1	chr11	 95420901	 95421367	-	lnc-FAM76B-1	lnc-FAM76B-1:1	XLOC_009528	linc-SESN3-1	NA	NA	NA	inter
CUST_31042_PI429285431	4.2422237	P	4.955491	P	0.609937236567961	0	lncRNA	32831-1_{1..336}	n337259|BC127809|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389429|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389429|-0.9973430|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337259|BC127809|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389429|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389429|-0.9973430|-1.0000000	chr6	 35394661	 35394996	+	NA	NA	NA	NA	PPARD	NA	chr6:35384661-35395968	inner
CUST_23655_PI429285431	1.8213729	A	3.1210532	P	0.40621620537229	0	lncRNA	25221-1_{1..448}	lnc-LRRC8C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC8C-2:1	chr1	 90061944	 90062391	+	lnc-LRRC8C-2	lnc-LRRC8C-2:1	ENSG00000251289.1	RP5-1007M22.3	LRRC8B	NA	chr1:90051944-90063420	inner
CUST_34476_PI429285431	0.90515935	A	0.8984375	A	1.00467010247125	0	lncRNA	35944-1_{1..307}	n341352|X79986|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3821|NULL|-1.1697200|-0.3520201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341352|X79986|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3821|NULL|-1.1697200|-0.3520201	chr7	145747159	145747465	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43895_PI429285431	7.54327	P	7.6559243	P	0.924884873383244	0	lncRNA	48611-1_{1..3000}	"gi|385275065|ref|NR_047653.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385275065|ref|NR_047653.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 2, non-coding RNA"	Chr2	 97258892	 97261891	-	55683	NR_047653.1	NA	NA	NA	NA	NA	inter
CUST_39828_PI429285431	0.9141184	A	0.9285092	A	0.990074642287157	0	lncRNA	40735-1_{1..641}	n406412|NR_015436|lncRNA|Homosapiens||RefGeneNoncode|NR_015436||-0.7268270|-0.2083514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n406412|NR_015436|lncRNA|Homosapiens||RefGeneNoncode|NR_015436||-0.7268270|-0.2083514	chr5	 87836596	 87837236	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50103_PI429285431	0.89385134	A	0.89338154	A	1.00032569357207	0	lncRNA	53834-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00028605 range=chr9:3663780-3694788 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028605 range=chr9:3663780-3694788 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	  3666780	  3669779	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50"	NA	inter
CUST_13947_PI429285431	2.9517906	A	3.0059872	P	0.963130636630261	0	lncRNA	15594-1_{1..1024}	lnc-ZNF507-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ZNF507-3:1	chr19	 32564274	 32565297	+	lnc-ZNF507-3	lnc-ZNF507-3:1	XLOC_013039	linc-ZNF507-3	NA	NA	NA	inter
CUST_38499_PI429285431	0.9258535	A	0.9297773	A	0.997283924318997	0	lncRNA	39513-1_{1..1003}	n383035|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fqm.1||-0.2218290|-0.1739216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383035|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fqm.1||-0.2218290|-0.1739216	chr16	 90107059	 90108061	+	NA	NA	NA	NA	GAS8	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90chr16:90097059-90111379"	NA	inter
CUST_30892_PI429285431	6.910413	P	7.2777967	P	0.775187009746703	0	lncRNA	32680-1_{1..717}	n336906|AY927522|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332684|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332684|1.8023500|-0.1322924	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336906|AY927522|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332684|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332684|1.8023500|-0.1322924	chr19	 47995312	 47996028	-	NA	NA	NA	NA	NAPA	NA	chr19:47990891-48018515	inter
CUST_40102_PI429285431	12.495265	P	12.017957	P	1.39214356790783	0	lncRNA	40947-1_{1..689}	n407515|NR_026973_2|lncRNA|Homosapiens||RefGeneNoncode|NR_026973_2||-0.8486240|-0.2430985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407515|NR_026973_2|lncRNA|Homosapiens||RefGeneNoncode|NR_026973_2||-0.8486240|-0.2430985	chr6	   995238	   995926	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003631	0.9133382	A	1.7093155	A	0.575952883400046	0	lncRNA	TCONS_00008170	NA	NA	NA	NA	XLOC_003615	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003615), lincRNA [TCONS_00008170]"	chr4:99599603-99599662	hs|4q23	Agilent_HUMAN_G3V2	TCONS_00008170	TCONS_00008170	chr4	 99599603	 99599662	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27485_PI429285431	0.9201585	A	1.4173448	A	0.708487203042174	0	lncRNA	29055-1_{1..475}	n324661|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319655|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319655|-1.0614800|-0.2140536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324661|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319655|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319655|-1.0614800|-0.2140536	chr22	 41090351	 41090825	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90"	NA	inter
CUST_40743_PI429285431	0.9046345	A	1.055642	A	0.900621297862409	0	lncRNA	41472-2_{3001..3330}	n410454|NR_037597|lncRNA|Homosapiens||RefGeneNoncode|NR_037597||2.9312300|-0.1977251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410454|NR_037597|lncRNA|Homosapiens||RefGeneNoncode|NR_037597||2.9312300|-0.1977251	chr2	 95537429	 95537758	-	NA	NA	NA	NA	TEKT4	NA	chr2:95537232-95542568	inter
CUST_5667_PI429285431	1.0745939	A	0.906762	A	1.1233690026501	0	lncRNA	5593-1_{1..750}	"transcript_id ""ENST00000598933.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598933.1"" | genecode_v17"	chr16	 85968887	 85969636	-	ENSG00000268804.1	ENST00000598933.1	RP11-542M13.3	RP11-542M13.3-001	NA	NA	NA	inter
CUST_18473_PI429285431	0.9023715	A	0.8940321	A	1.0057971705295	0	lncRNA	20194-1_{1..409}	lnc-RASA1-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASA1-3:6	chr5	 87571728	 87572136	+	lnc-RASA1-3	lnc-RASA1-3:6	ENSG00000247828	CTC-358I24.1	TMEM161B	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60chr5:87561728-87564665"	NA	inter
CUST_19665_PI429285431	0.930357	A	1.612639	A	0.62317877403163	0	lncRNA	21321-1_{1..451}	lnc-ASB15-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASB15-3:1	chr7	123099747	123100197	+	lnc-ASB15-3	lnc-ASB15-3:1	ENSG00000232524.1	RP11-332K15.1	IQUB	"hg19_refFlat_IQUB:range=chr7:123092797-1231523945'pad=0,hg19_refFlat_IQUB:range=chr7:123092797-1231523945'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50chr7:123092235-123109910"	NA	inner
CUST_25539_PI429285431	1.0907799	A	1.6085997	A	0.698426497832624	0	lncRNA	27069-1_{1..424}	lnc-HIATL1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-HIATL1-5:1	chr9	 97586743	 97587166	+	lnc-HIATL1-5	lnc-HIATL1-5:1	ENSG00000230815.1	RP11-49O14.3	C9orf3	NA	chr9:97576743-97597055	inner
CUST_15090_PI429285431	2.4600375	A	2.8220937	A	0.77805486693767	0	lncRNA	16753-1_{1..527}	lnc-GCNT2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GCNT2-3:1	chr6	  9238536	  9239062	+	lnc-GCNT2-3	lnc-GCNT2-3:1	XLOC_005166	linc-GCNT2-2	NA	NA	NA	inter
CUST_43149_PI429285431	7.724825	P	8.567646	P	0.557552282449366	0	lncRNA	47964-1_{1..750}	ENST00000596181 havana:sense_intronic chromosome:GRCh37:1:146138749:146159103:-1 gene:ENSG00000227733 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000596181 havana:sense_intronic chromosome:GRCh37:1:146138749:146159103:-1 gene:ENSG00000227733 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr1	146138749	146139498	-	ENSG00000227733	ENST00000596181	NA	NA	NA	NA	NA	inter
CUST_8937_PI429285431	5.1840844	P	5.217428	P	0.977153014684704	0	lncRNA	10472-1_{1..691}	lnc-UBLCP1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-UBLCP1-5:1	chr5	158542120	158542810	+	lnc-UBLCP1-5	lnc-UBLCP1-5:1	ENSG00000245812	RP11-175K6.1	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70"	NA	inter
CUST_1904_PI429285431	1.4107217	A	1.4533567	A	0.970880070115841	0	lncRNA	1895-1_{1..319}	"transcript_id ""ENST00000512039.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512039.1"" | genecode_v17"	chr4	137730224	137730542	-	ENSG00000248869.1	ENST00000512039.1	RP11-138I17.1	RP11-138I17.1-002	NA	NA	NA	inter
CUST_23662_PI429285431	0.90072405	A	0.91264653	A	0.991770019856406	0	lncRNA	25227-1_{1..831}	lnc-KTN1-AS1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KTN1-AS1-1:6	chr14	 56263321	 56264151	-	lnc-KTN1-AS1-1	lnc-KTN1-AS1-1:6	ENSG00000258791.2	LINC00520	NA	NA	NA	inter
CUST_21210_PI429285431	1.3303195	A	0.9544339	A	1.29763586547721	0	lncRNA	22835-1_{1..1684}	lnc-NSMCE1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NSMCE1-1:1	chr16	 27224631	 27226314	-	lnc-NSMCE1-1	lnc-NSMCE1-1:1	ENSG00000259940.1	CTD-3203P2.1	JMJD5	"hg19_refFlat_KDM8:range=chr16:27215414-272320515'pad=0,hg19_refFlat_KDM8:range=chr16:27215414-272320515'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60;hg19_refFlat_KDM8:range=chr16:27221445-272320515'pad=0,hg19_refFlat_KDM8:range=chr16:27221445-272320515'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60chr16:27214807-27233089"	NA	inner
LNCA_21_P0000917	0.90883714	A	0.92285764	A	0.99032879973893	0	lncRNA	XR_110824	XR_110824	XR_110824	NA	Hs.729259	LOC100505794	uncharacterized LOC100505794	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505794, transcript variant 1 (LOC100505794), miscRNA [XR_110824]"	chr1:146646696-146646755	hs|1q21.1	Agilent_HUMAN_G3V2	XR_110824	XR_110824	chr1	146646696	146646755	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13601_PI429285431	1.5134113	A	0.97159505	A	1.45580411754256	0	lncRNA	15240-1_{1..414}	lnc-RP11-82I10.1.1-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-82I10.1.1-10:1	chr15	 97885377	 97885790	-	lnc-RP11-82I10.1.1-10	lnc-RP11-82I10.1.1-10:1	XLOC_011597	linc-RGMA-11	NA	NA	NA	inter
CUST_33189_PI429285431	0.91341645	A	0.9217882	A	0.994213949134174	0	lncRNA	34781-1_{1..216}	n339881|S81294|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2329|NULL|-0.9964630|-0.0658870	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339881|S81294|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2329|NULL|-0.9964630|-0.0658870	chr18	 49935411	 49935626	+	NA	NA	NA	NA	DCC	NA	chr18:49925411-49945627	inner
CUST_8148_PI429285431	2.6712496	A	2.2011526	A	1.38520259945984	0	lncRNA	9751-1_{1..2598}	lnc-NEDD1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NEDD1-4:1	chr12	 97958516	 97961113	+	lnc-NEDD1-4	lnc-NEDD1-4:1	ENSG00000255794	RMST	NA	NA	NA	inter
CUST_40498_PI429285431	0.9255702	A	0.91437376	A	1.00779097373409	0	lncRNA	41263-1_{1..1609}	n409433|NR_033823_2|lncRNA|Homosapiens||RefGeneNoncode|NR_033823_2||-0.9783760|-0.3022149	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409433|NR_033823_2|lncRNA|Homosapiens||RefGeneNoncode|NR_033823_2||-0.9783760|-0.3022149	chr6	  1888250	  1889858	+	NA	NA	NA	NA	GMDS	NA	chr6:1878250-1918235	inner
CUST_24327_PI429285431	6.5912304	P	7.7179384	P	0.457959524368574	0	lncRNA	25880-1_{1..1955}	lnc-PLEKHA3-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLEKHA3-6:1	chr2	179644565	179646519	+	lnc-PLEKHA3-6	lnc-PLEKHA3-6:1	ENSG00000266413.1	RP11-88L24.4	TTN	"hg19_refFlat_TTN:range=chr2:179610312-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179610312-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80chr2:179634565-179654689"	NA	inner
CUST_29921_PI429285431	0.89472353	A	0.9010419	A	0.995630015938121	0	lncRNA	31685-1_{1..455}	n334067|M31030|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195398|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195398|1.6640500|-0.2206340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334067|M31030|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195398|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195398|1.6640500|-0.2206340	chr2	 21225292	 21225746	-	NA	NA	NA	NA	APOB	NA	chr2:21224301-21235747	inner
CUST_38242_PI429285431	2.5923462	A	2.8388236	A	0.842952124100608	0	lncRNA	39303-1_{1..1588}	n381737|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001oqx.1||0.1012260|-0.1411894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n381737|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001oqx.1||0.1012260|-0.1411894	chr11	 71505408	 71506995	-	NA	NA	NA	NA	FAM86C1	"hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0,hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0,hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0 3'pad=0 strand=- repeatMasking=none,-98.90;hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0,hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50chr11:71495408-71512280"	NA	inter
CUST_17592_PI429285431	3.8258424	P	3.7122092	P	1.08194952779639	0	lncRNA	19318-1_{1..375}	lnc-EXTL3-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXTL3-4:2	chr8	 28911378	 28911752	+	lnc-EXTL3-4	lnc-EXTL3-4:2	XLOC_006752	linc-LEPROTL1-7	HMBOX1	NA	chr8:28901378-28910242	inter
CUST_33881_PI429285431	1.0988078	A	1.1459233	A	0.967869537609189	0	lncRNA	35425-1_{1..1030}	n340671|BC039527|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3134|NULL|-1.0456300|-0.2135601	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340671|BC039527|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3134|NULL|-1.0456300|-0.2135601	chr5	142239168	142240197	-	NA	NA	NA	NA	ARHGAP26	NA	chr5:142229168-142258475	inner
CUST_44723_PI429285431	5.684662	P	4.4409485	P	2.36807290930291	0	lncRNA	49277-1_{1..2086}	"gi|397739075|ref|NR_073063.1| Homo sapiens complement component 2 (C2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397739075|ref|NR_073063.1| Homo sapiens complement component 2 (C2), transcript variant 4, non-coding RNA"	NT_167248.1	  3159353	  3161438	+	717	NR_073063.1	NA	NA	NA	NA	NA	Unknown
CUST_49193_PI429285431	0.89780176	A	0.9030741	A	0.99635216197981	0	lncRNA	53016-1_{1..565}	hg19_lincRNAsTranscripts_TCONS_l2_00020809 range=chr4:148490803-148492096 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020809 range=chr4:148490803-148492096 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	148490803	148491367	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010436	2.1187851	A	3.5948272	P	0.359473643079895	0	lncRNA	TCONS_00029687	NA	NA	NA	NA	XLOC_014355	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014355), lincRNA [TCONS_00029687]"	chr22:34672918-34672859	hs|22q12.3	Agilent_HUMAN_G3V2	TCONS_00029687	TCONS_00029687	chr22	 34672859	 34672918	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007912	4.8885207	P	4.8974857	P	0.993805202894707	0	lncRNA	BC038529	NA	BC038529	NA	Hs.385801	XLOC_010469	NA	NA	THC2606536	NA	"BROAD Institute lincRNA (XLOC_010469), lincRNA [TCONS_00021501]"	chr13:91187362-91187421	hs|13q31.3	Agilent_HUMAN_G3V2	BC038529	BC038529	chr13	 91187362	 91187421	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012464	0.91643465	A	0.9219502	A	0.996184210764781	0	lncRNA	TCONS_l2_00019564	NA	NA	NA	NA	XLOC_l2_010374	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010374), lincRNA [TCONS_l2_00019564]"	chr3:146134286-146134227	hs|3q24	Agilent_HUMAN_G3V2	TCONS_l2_00019564	TCONS_l2_00019564	chr3	146134227	146134286	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007666	3.0909536	P	2.764157	A	1.25422536366688	0	lncRNA	TCONS_00020644	NA	NA	NA	NA	XLOC_009944	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009944), lincRNA [TCONS_00020644]"	chr12:127634640-127634699	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020644	TCONS_00020644	chr12	127634640	127634699	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15129_PI429285431	1.1592612	A	0.9006952	A	1.19628903439832	0	lncRNA	16789-1_{1..630}	lnc-LRRC61-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC61-2:3	chr7	150054392	150055021	+	lnc-LRRC61-2	lnc-LRRC61-2:3	XLOC_006291	linc-REPIN1	NA	NA	NA	inter
LNCA_19_P00801041	4.991538	P	5.022976	P	0.978444551036397	0	lncRNA	TCONS_00075451_GNASAS	NA	NA	NA	NA	GNASAS	NA	NA	NA	NA	"BROAD Institute lincRNA (GNASAS), lincRNA [TCONS_00075451_GNASAS]"	chr20:57402346-57402287	hs|20q13.32	Agilent_HUMAN_G3V2	TCONS_00075451_GNASAS	TCONS_00075451_GNASAS	chr20	 57402287	 57402346	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21051_PI429285431	2.929298	A	2.5911126	A	1.26416554528066	0	lncRNA	22678-1_{1..372}	lnc-OSCAR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OSCAR-1:1	chr19	 54617297	 54617668	-	lnc-OSCAR-1	lnc-OSCAR-1:1	ENSG00000231374.1	AC012314.6	NDUFA3	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00chr19:54607297-54610281"	NA	inner
CUST_2518_PI429285431	7.0807886	P	6.6645913	P	1.33440564776563	0	lncRNA	2506-1_{1..766}	"transcript_id ""ENST00000586726.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586726.1"" | genecode_v17"	chr6	 34248729	 34249494	+	ENSG00000225339.2	ENST00000586726.1	RP11-513I15.6	RP11-513I15.6-003	NUDT3	NA	chr6:34254971-34262045	inter
LNCA_21_P0014212	2.484044	A	1.5991881	A	1.84658017118722	0	lncRNA	XR_108878	XR_108878	XR_108878	NA	NA	LOC100506910	uncharacterized LOC100506910	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506910 (LOC100506910), miscRNA [XR_108878]"	chr8:116474579-116485669	hs|8q23.3	Agilent_HUMAN_G3V2	XR_108878	XR_108878	chr8	116474579	116485669	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18646_PI429285431	3.9182072	P	3.8515954	P	1.04725429427525	0	lncRNA	20350-1_{1..1116}	lnc-ZNF853-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF853-1:1	chr7	  6660753	  6661868	+	lnc-ZNF853-1	lnc-ZNF853-1:1	ENSG00000236609	AC073343.8	ZNF853	NA	chr7:6655527-6663921	inner
CUST_29775_PI429285431	1.9172156	A	0.89800805	A	2.0268053610315	0	lncRNA	31538-1_{1..338}	n333472|BC026281|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091244|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091244|-1.3020900|-0.2915295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333472|BC026281|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091244|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091244|-1.3020900|-0.2915295	chr11	108376036	108376373	-	NA	NA	NA	NA	EXPH5	NA	chr11:108376158-108386374	inner
CUST_2174_PI429285431	0.90667593	A	0.9505322	A	0.970058548623712	0	lncRNA	2165-1_{1..661}	"transcript_id ""ENST00000508486.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508486.2"" | genecode_v17"	chr5	 65803372	 65804032	-	ENSG00000250313.2	ENST00000508486.2	RP11-5P22.3	RP11-5P22.3-001	NA	NA	NA	inter
LNCA_21_P0004400	3.4393654	P	3.6781883	P	0.847436456780893	0	lncRNA	TCONS_00010350	NA	NA	NA	NA	XLOC_004839	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004839), lincRNA [TCONS_00010350]"	chr5:59817884-59798437	hs|5q12.1	Agilent_HUMAN_G3V2	TCONS_00010350	TCONS_00010350	chr5	 59798437	 59817884	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33761_PI429285431	1.9410942	A	1.9420515	A	0.999336670304531	0	lncRNA	35315-1_{1..1538}	n340540|AK129894|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3002|NULL|-1.1745100|-0.4116292	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340540|AK129894|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3002|NULL|-1.1745100|-0.4116292	chr5	 87553772	 87555309	-	NA	NA	NA	NA	TMEM161B	NA	chr5:87543772-87564665	inner
CUST_12033_PI429285431	3.505746	P	4.0237637	P	0.698330698567742	0	lncRNA	13617-1_{1..602}	lnc-VSTM2B-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VSTM2B-6:3	chr19	 29461311	 29461912	+	lnc-VSTM2B-6	lnc-VSTM2B-6:3	XLOC_013027	linc-VSTM2B-6	NA	NA	NA	inter
CUST_3829_PI429285431	5.969538	P	5.979237	P	0.993299713191198	0	lncRNA	3796-1_{1..718}	"transcript_id ""ENST00000528844.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000528844.1"" | genecode_v17"	chr10	127395806	127396523	-	ENSG00000224023.6	ENST00000528844.1	RP11-383C5.4	RP11-383C5.4-005	C10orf137	NA	chr10:127408084-127418115	inter
CUST_35308_PI429285431	10.362663	P	10.305659	P	1.04030315085077	0	lncRNA	36711-1_{1..2224}	n342331|AK094790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4823|NULL|-0.7317340|-0.3086348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342331|AK094790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4823|NULL|-0.7317340|-0.3086348	chr14	 74047397	 74049620	+	NA	NA	NA	NA	ACOT2	NA	chr14:74037397-74042359	inter
CUST_19936_PI429285431	2.7434552	A	2.9650207	A	0.85763429356364	0	lncRNA	21591-1_{1..1185}	lnc-DDX28-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DDX28-1:1	chr16	 68049607	 68050791	-	lnc-DDX28-1	lnc-DDX28-1:1	ENSG00000263201.1	CTC-479C5.6	DUS2L	NA	chr16:68057204-68059814	inter
CUST_31465_PI429285431	3.2042022	P	3.3575642	P	0.899152669100073	0	lncRNA	33232-1_{1..1864}	n337945|AK131551|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|330|NULL|4.2065500|-0.0757400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337945|AK131551|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|330|NULL|4.2065500|-0.0757400	chr15	 71389290	 71391153	+	NA	NA	NA	NA	THSD4	NA	chr15:71433788-72040170	inner
LNCA_21_P0006123	2.688026	A	2.741294	A	0.96375076145005	0	lncRNA	TCONS_00015915	NA	NA	NA	NA	XLOC_007277	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007277), lincRNA [TCONS_00015915]"	chr9:7209903-7209962	hs|9p24.1	Agilent_HUMAN_G3V2	TCONS_00015915	TCONS_00015915	chr9	  7209903	  7209962	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16441_PI429285431	1.7010676	A	1.8389128	A	0.908875632830064	0	lncRNA	18140-1_{1..589}	lnc-NDUFS6-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDUFS6-5:1	chr5	  1939884	  1940472	+	lnc-NDUFS6-5	lnc-NDUFS6-5:1	XLOC_004250	linc-C5orf38-5	NA	NA	NA	inter
CUST_30088_PI429285431	0.8990394	A	0.91509736	A	0.988931185459788	0	lncRNA	31860-1_{1..277}	n334619|U84517|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221880|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221880|-1.0154100|-0.3752914	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334619|U84517|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221880|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221880|-1.0154100|-0.3752914	chr22	 19097800	 19098076	-	NA	NA	NA	NA	DGCR2	NA	chr22:19087800-19109967	inner
CUST_4706_PI429285431	1.9390647	A	2.548587	A	0.655413684228976	0	lncRNA	4653-1_{1..563}	"transcript_id ""ENST00000550928.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550928.1"" | genecode_v17"	chr14	 19412520	 19413082	+	ENSG00000258364.1	ENST00000550928.1	RP11-536C10.16	RP11-536C10.16-001	NA	"hg19_refFlat_USP10:range=chr16:84733697-848126885'pad=0,hg19_refFlat_USP10:range=chr16:84733697-848126885'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.80"	NA	inter
CUST_41625_PI429285431	4.002323	P	4.5030985	P	0.706726788230445	0	lncRNA	43006-1_{1..93}	ENST00000581561 ncrna:miRNA chromosome:GRCh37:11:3394759:3394851:-1 gene:ENSG00000263365 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581561 ncrna:miRNA chromosome:GRCh37:11:3394759:3394851:-1 gene:ENSG00000263365 gene_biotype:miRNA transcript_biotype:miRNA	chr11	  3394759	  3394851	-	ENSG00000263365	ENST00000581561	NA	NA	ZNF195	NA	chr11:3384759-3400452	inner
CUST_50005_PI429285431	3.9761045	P	4.575613	P	0.659978759868645	0	lncRNA	53742-1_{1..1615}	hg19_lincRNAsTranscripts_TCONS_l2_00028480 range=chr8:39172110-39274895 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028480 range=chr8:39172110-39274895 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 39172110	 39173724	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013908	2.4274235	A	2.5693903	A	0.906282793847828	0	lncRNA	TCONS_l2_00031187	NA	NA	NA	NA	XLOC_l2_016079	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_016079), lincRNA [TCONS_l2_00031187]"	chrUn_gl000237:459-400	NA	Agilent_HUMAN_G3V2	TCONS_l2_00031187	TCONS_l2_00031187	chrUn_gl000237	      400	      459	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34171_PI429285431	0.9027318	A	0.90272963	A	1.00000150413051	0	lncRNA	35688-1_{1..2135}	n341017|AK095484|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3483|NULL|-0.3102540|-0.2613722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341017|AK095484|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3483|NULL|-0.3102540|-0.2613722	chr11	 43665787	 43667921	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_SSH1:range=chr12:109185876-1092512725'pad=0,hg19_refFlat_SSH1:range=chr12:109185876-1092512725'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_SSH1:range=chr12:109185876-1092211815'pad=0,hg19_refFlat_SSH1:range=chr12:109185876-1092211815'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70"	NA	inter
CUST_47409_PI429285431	5.311596	P	5.9372635	P	0.648119838615773	0	lncRNA	51452-1_{1..2287}	"gi|334085238|ref|NR_038316.1| Homo sapiens ITGB2 antisense RNA 1 (ITGB2-AS1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|334085238|ref|NR_038316.1| Homo sapiens ITGB2 antisense RNA 1 (ITGB2-AS1), transcript variant 6, non-coding RNA"	Chr21	 46340950	 46343236	+	100505746	NR_038316.1	NA	NA	NA	NA	NA	inter
CUST_24642_PI429285431	2.760693	A	3.0537171	P	0.816189411717734	0	lncRNA	26191-1_{1..534}	lnc-RBMY1E-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RBMY1E-1:1	chrY	 23563363	 23563896	-	lnc-RBMY1E-1	lnc-RBMY1E-1:1	ENSG00000242300.1	RBMY2EP	NA	NA	NA	inter
CUST_14058_PI429285431	1.5117097	A	1.9131542	A	0.757099856564829	0	lncRNA	15704-1_{1..298}	lnc-CHD2-4:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD2-4:8	chr15	 94076002	 94076299	+	lnc-CHD2-4	lnc-CHD2-4:8	XLOC_011362	linc-MCTP2-3	NA	NA	NA	inter
LNCA_21_P0006917	4.741097	P	4.94666	P	0.867200203288451	0	lncRNA	TCONS_00018343	NA	NA	NA	NA	XLOC_008624	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008624), lincRNA [TCONS_00018343]"	chr10:115767952-115768011	hs|10q25.3	Agilent_HUMAN_G3V2	TCONS_00018343	TCONS_00018343	chr10	115767952	115768011	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7443_PI429285431	1.5702102	A	1.6135898	A	0.970379111315318	0	lncRNA	9086-1_{1..1801}	lnc-CCDC68-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC68-2:1	chr18	 53230437	 53232237	-	lnc-CCDC68-2	lnc-CCDC68-2:1	ENSG00000251494	ENST00000507267	TCF4	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr18:53220437-53240487"	NA	inner
LNCA_21_P0007200	1.9332664	A	1.9340839	A	0.999433512694448	0	lncRNA	TCONS_00019282	NA	NA	NA	NA	XLOC_009114	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009114), lincRNA [TCONS_00019282]"	chr11:42279896-42283439	hs|11p12	Agilent_HUMAN_G3V2	TCONS_00019282	TCONS_00019282	chr11	 42279896	 42283439	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26249_PI429285431	5.3628564	P	5.407263	P	0.969688580960891	0	lncRNA	27756-1_{1..642}	lnc-AC012652.1.1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC012652.1.1-1:8	chr15	 41580160	 41580801	+	lnc-AC012652.1.1-1	lnc-AC012652.1.1-1:8	ENSG00000247556.2	OIP5-AS1	CHP	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70chr15:41570160-41574085"	NA	inter
CUST_32536_PI429285431	4.9187737	P	5.1103573	P	0.87564402728347	0	lncRNA	34202-1_{1..541}	n339147|BC038211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1577|NULL|-0.8742070|-0.1417768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339147|BC038211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1577|NULL|-0.8742070|-0.1417768	chr2	219231387	219231927	-	NA	NA	NA	NA	C2orf62	"hg19_refFlat_C2orf62:range=chr2:219221608-2192326875'pad=0,hg19_refFlat_C2orf62:range=chr2:219221608-2192326875'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.80chr2:219221387-219232817"	NA	inner
CUST_41620_PI429285431	2.0865474	A	2.1808999	A	0.936692552715015	0	lncRNA	42993-1_{1..101}	ENST00000585195 ncrna:miRNA chromosome:GRCh37:X:109325346:109325446:1 gene:ENSG00000265584 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585195 ncrna:miRNA chromosome:GRCh37:X:109325346:109325446:1 gene:ENSG00000265584 gene_biotype:miRNA transcript_biotype:miRNA	chrX	109325346	109325446	+	ENSG00000265584	ENST00000585195	NA	NA	TMEM164	NA	chrX:109315346-109335446	inner
CUST_35765_PI429285431	0.898573	A	0.8956535	A	1.00202569214141	0	lncRNA	37184-1_{1..573}	n344454|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2|NULL|-1.2912500|-0.3908127	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344454|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2|NULL|-1.2912500|-0.3908127	chr16	 10479914	 10480486	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_24244_PI429285431	7.1916757	P	7.1099534	P	1.05828067002683	0	lncRNA	25795-1_{1..362}	lnc-OSBPL9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OSBPL9-1:2	chr1	 52027143	 52027504	+	lnc-OSBPL9-1	lnc-OSBPL9-1:2	ENSG00000227070.1	RP11-191G24.1	OSBPL9	NA	chr1:52020400-52037301	inter
CUST_35841_PI429285431	0.9143903	A	0.9122088	A	1.00151324437491	0	lncRNA	37241-1_{1..2803}	n344512|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_60|NULL|-1.6256400|-0.2563324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344512|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_60|NULL|-1.6256400|-0.2563324	chrX	100673288	100676090	+	NA	NA	NA	NA	RPL36A-HNRNPH2	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PPIAL4F:range=chr1:148806090-1488065845'pad=0,hg19_refFlat_PPIAL4F:range=chr1:148806090-1488065845'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PPIAL4F:range=chr1:148201967-1482024615'pad=0,hg19_refFlat_PPIAL4F:range=chr1:148201967-1482024615'pad=0 3'pad=0 strand=- repeatMasking=none,-59.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_PPIAL4E:range=chr1:148644086-1486445805'pad=0,hg19_refFlat_PPIAL4E:range=chr1:148644086-1486445805'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.40;hg19_refFlat_PPIAL4D:range=chr1:148806090-1488065845'pad=0,hg19_refFlat_PPIAL4D:range=chr1:148806090-1488065845'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.00;hg19_refFlat_PPIAL4D:range=chr1:148201967-1482024615'pad=0,hg19_refFlat_PPIAL4D:range=chr1:148201967-1482024615'pad=0 3'pad=0 strand=- repeatMasking=none,-59.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80chrX:100663288-100669128"	NA	inter
CUST_17151_PI429285431	0.9063034	A	0.8979088	A	1.00583565479984	0	lncRNA	18860-1_{1..1738}	lnc-C8orf86-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C8orf86-1:2	chr8	 38412407	 38414144	-	lnc-C8orf86-1	lnc-C8orf86-1:2	XLOC_007058	linc-C8orf86-2	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40"	NA	inter
CUST_9232_PI429285431	0.919719	A	0.9211281	A	0.999023763137436	0	lncRNA	10742-1_{1..2472}	lnc-APOC3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-APOC3-3:1	chr11	116760593	116763064	+	lnc-APOC3-3	lnc-APOC3-3:1	ENSG00000250570	ENST00000503992	SIK3	"hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50chr11:116750593-116771437"	NA	inner
CUST_26455_PI429285431	1.262585	A	1.347462	A	0.942864918423263	0	lncRNA	27963-1_{1..464}	lnc-KCTD17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCTD17-1:1	chr22	 37478697	 37479160	+	lnc-KCTD17-1	lnc-KCTD17-1:1	ENSG00000231467.2	RP5-1170K4.7	TMPRSS6	NA	chr22:37468697-37488887	inner
CUST_28097_PI429285431	7.636853	P	7.695651	P	0.960063675645455	0	lncRNA	29719-1_{1..525}	n325369|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324314|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324314|-0.5522240|-0.2193867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325369|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324314|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324314|-0.5522240|-0.2193867	chr2	 23407039	 23407563	-	NA	NA	NA	NA	NA	"hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20"	NA	inter
CUST_38424_PI429285431	0.91779584	A	1.350044	A	0.741106015250456	0	lncRNA	39452-1_{1..3000}	n382510|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zqm.2||-0.1914180|-0.3700847	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n382510|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zqm.2||-0.1914180|-0.3700847	chr15	 43030612	 43033611	+	NA	NA	NA	NA	TTBK2	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70chr15:43036536-43045399"	NA	inter
LNCA_21_P0012848	0.91149944	A	1.0179455	A	0.92887343590009	0	lncRNA	TCONS_l2_00022505	NA	NA	NA	NA	XLOC_l2_011744	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011744), lincRNA [TCONS_l2_00022505]"	chr5:124486461-124486520	hs|5q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00022505	TCONS_l2_00022505	chr5	124486461	124486520	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014675	5.8362346	P	6.0871077	P	0.840387669798767	0	lncRNA	XR_111249	XR_111249	XR_111249	NA	NA	LOC100509976	uncharacterized LOC100509976	NA	THC2689905	NA	"PREDICTED: Homo sapiens hypothetical LOC100509976 (LOC100509976), miscRNA [XR_111249]"	chr12:6504474-6504533	hs|12p13.31	Agilent_HUMAN_G3V2	XR_111249	XR_111249	chr12	  6504474	  6504533	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008256	0.91203916	A	1.2796034	A	0.775090008299917	0	lncRNA	TCONS_00022282	NA	NA	NA	NA	XLOC_010610	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010610), lincRNA [TCONS_00022282]"	chr13:50210838-50210779	hs|13q14.2	Agilent_HUMAN_G3V2	TCONS_00022282	TCONS_00022282	chr13	 50210779	 50210838	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39477_PI429285431	7.524535	P	8.625609	P	0.466169331432296	0	lncRNA	40423-1_{1..456}	n387087|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ybj.1||2.4011100|-0.1195574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n387087|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ybj.1||2.4011100|-0.1195574	chr19	 50473579	 50474034	+	NA	NA	NA	NA	SIGLEC11	"hg19_refFlat_LOC100129083:range=chr19:51919279-519204175'pad=0,hg19_refFlat_LOC100129083:range=chr19:51919279-519204175'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20chr19:50463579-50464429"	NA	inter
CUST_227_PI429285431	0.91978025	A	0.90443146	A	1.01069576559534	0	lncRNA	217-1_{1..513}	"transcript_id ""ENST00000456803.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456803.1"" | genecode_v17"	chr1	 48519217	 48519729	+	ENSG00000226133.1	ENST00000456803.1	RP4-683M8.2	RP4-683M8.2-001	NA	NA	NA	inter
CUST_45705_PI429285431	6.0977345	P	6.285117	P	0.878197601896603	0	lncRNA	50074-1_{1..867}	"gi|310120609|ref|XR_109072.1| PREDICTED: Homo sapiens uncharacterized LOC100506518, transcript variant 1 (LOC100506518), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120609|ref|XR_109072.1| PREDICTED: Homo sapiens uncharacterized LOC100506518, transcript variant 1 (LOC100506518), misc_RNA"	Chr11	   777577	   778443	+	100506518	XR_109072.2	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-59.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.21;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
CUST_30440_PI429285431	7.137733	P	6.8532333	P	1.21798781474736	0	lncRNA	32220-1_{1..308}	n335576|CR542193|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000269062|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000269062|1.7788900|-0.1240954	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335576|CR542193|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000269062|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000269062|1.7788900|-0.1240954	chr1	209849030	209849337	+	NA	NA	NA	NA	G0S2	NA	chr1:209848670-209849735	inner
CUST_30130_PI429285431	1.949683	A	0.8963804	A	2.07527510883709	0	lncRNA	31903-1_{1..232}	n334775|AJ227855|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245004|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245004|-1.2744000|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334775|AJ227855|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245004|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245004|-1.2744000|-1.0000000	chr13	 53049715	 53049946	-	NA	NA	NA	NA	CKAP2	NA	chr13:53039715-53050763	inner
LNCA_21_P0010347	0.9796574	A	1.778846	A	0.574672293600899	0	lncRNA	THC2522095	NA	NA	NA	NA	XLOC_014192	NA	NA	THC2522095	NA	"BROAD Institute lincRNA (XLOC_014192), lincRNA [TCONS_00029376]"	chr22:027056723-027056782	hs|22q12.1	Agilent_HUMAN_G3V2	THC2522095	THC2522095	chr22	 27056723	 27056782	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28057_PI429285431	5.592532	P	5.9973736	P	0.755319218134972	0	lncRNA	29675-1_{1..952}	n325323|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326019|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326019|-0.9582760|-0.2522610	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325323|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326019|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326019|-0.9582760|-0.2522610	chr2	 43178387	 43179338	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12577_PI429285431	6.4458194	P	6.771645	P	0.797841680966297	0	lncRNA	14185-1_{1..793}	lnc-NADSYN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NADSYN1-1:1	chr11	 71162736	 71163528	+	lnc-NADSYN1-1	lnc-NADSYN1-1:1	XLOC_009199	linc-NADSYN1-1	NADSYN1	NA	chr11:71164217-71173182	inter
LNCA_21_P0001872	3.4368234	P	3.6052709	P	0.889799689382285	0	lncRNA	ENST00000423168	NA	NA	NA	NA	XLOC_001508	NA	ENST00000423168	NA	NA	"BROAD Institute lincRNA (XLOC_001508), lincRNA [TCONS_00002918]"	chr2:66917118-66922336	hs|2p14	Agilent_HUMAN_G3V2	ENST00000423168	ENST00000423168	chr2	 66917118	 66922336	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16412_PI429285431	3.3500595	A	4.175878	P	0.564162039353732	0	lncRNA	18108-1_{1..306}	lnc-SFN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SFN-1:1	chr1	 27204609	 27204914	+	lnc-SFN-1	lnc-SFN-1:1	XLOC_000104	linc-NUDC	GPN2	NA	chr1:27205873-27214736	inter
CUST_20728_PI429285431	10.409018	P	10.717615	P	0.807426588187626	0	lncRNA	22362-2_{3001..5108}	lnc-TNPO3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNPO3-1:3	chr7	128553654	128555761	-	lnc-TNPO3-1	lnc-TNPO3-1:3	ENSG00000135253.8	KCP	KCP	NA	chr7:128540654-128550773	inner
CUST_43798_PI429285431	2.3382492	A	1.9765975	A	1.28489609634149	0	lncRNA	48527-2_{3001..3185}	"gi|109638756|ref|NR_003095.1| Homo sapiens E2F transcription factor 6 (E2F6), transcript variant e, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|109638756|ref|NR_003095.1| Homo sapiens E2F transcription factor 6 (E2F6), transcript variant e, non-coding RNA"	NA	NA	NA	NA	NA	NR_003095.1	NA	NA	NA	NA	NA	Unknown
CUST_9948_PI429285431	10.114475	P	9.945972	P	1.12389168297275	0	lncRNA	11471-1_{1..488}	lnc-KCNJ12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNJ12-1:1	chr17	 21356643	 21357130	+	lnc-KCNJ12-1	lnc-KCNJ12-1:1	XLOC_012145	linc-MTRNR2L1-4	NA	NA	NA	inter
CUST_6717_PI429285431	0.92145497	A	0.90658534	A	1.01036014056314	0	lncRNA	6665-1_{1..573}	"transcript_id ""ENST00000416237.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416237.1"" | genecode_v17"	chr20	 51104461	 51105033	-	ENSG00000232465.1	ENST00000416237.1	RP5-1022J11.2	RP5-1022J11.2-001	NA	NA	NA	inter
CUST_22772_PI429285431	8.1136465	P	8.625784	P	0.701182793990932	0	lncRNA	24353-1_{1..3000}	lnc-BCL7C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-BCL7C-2:1	chr16	 30930640	 30933639	-	lnc-BCL7C-2	lnc-BCL7C-2:1	ENSG00000260852.1	FBXL19-AS1	FBXL19	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr16:30935896-30944590"	NA	inter
CUST_25488_PI429285431	0.906129	A	0.90477	A	1.0009424308275	0	lncRNA	27018-1_{1..1754}	lnc-WDR4-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR4-5:1	chr21	 44161204	 44162957	-	lnc-WDR4-5	lnc-WDR4-5:1	ENSG00000225731.1	AP001627.1	PDE9A	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-62.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_C11orf44:range=chr11:130542874-1305840925'pad=0,hg19_refFlat_C11orf44:range=chr11:130542874-1305840925'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80chr21:44151204-44171868"	NA	inner
CUST_35223_PI429285431	1.3819535	A	1.0041369	A	1.29937387140053	0	lncRNA	36623-1_{1..799}	n342213|AF129928|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4703|NULL|-1.0865300|-0.2670298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342213|AF129928|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4703|NULL|-1.0865300|-0.2670298	chr15	 28534032	 28534830	-	NA	NA	NA	NA	HERC2	NA	chr15:28524032-28544812	inner
CUST_41692_PI429285431	3.472909	P	3.6555555	P	0.881085237817694	0	lncRNA	43166-1_{1..82}	ENST00000581916 ncrna:miRNA chromosome:GRCh37:X:80496319:80496400:1 gene:ENSG00000264374 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581916 ncrna:miRNA chromosome:GRCh37:X:80496319:80496400:1 gene:ENSG00000264374 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 80496319	 80496400	+	ENSG00000264374	ENST00000581916	NA	NA	SH3BGRL	NA	chrX:80486319-80506400	inner
CUST_44985_PI429285431	6.9591103	P	7.2609363	P	0.811224989583855	0	lncRNA	49494-2_{3001..5135}	"gi|310120006|ref|XR_108833.1| PREDICTED: Homo sapiens uncharacterized LOC100505669 (LOC100505669), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310120006|ref|XR_108833.1| PREDICTED: Homo sapiens uncharacterized LOC100505669 (LOC100505669), misc_RNA"	NA	NA	NA	NA	NA	XR_108833.1	NA	NA	NA	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70"	NA	Unknown
LNCA_21_P0000976	0.90477	A	0.9206326	A	0.989065108896316	0	lncRNA	ENST00000424357	NA	NA	NA	NA	XLOC_000207	NA	ENST00000424357	NA	NA	"BROAD Institute lincRNA (XLOC_000207), lincRNA [TCONS_00000206]"	chr1:56333862-56333921	hs|1p32.2	Agilent_HUMAN_G3V2	ENST00000424357	ENST00000424357	chr1	 56333862	 56333921	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44223_PI429285431	3.5672348	P	3.4406092	P	1.09173718756267	0	lncRNA	48872-3_{6001..6837}	"gi|292781202|ref|NR_033437.1| Homo sapiens uridine monophosphate synthetase (UMPS), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|292781202|ref|NR_033437.1| Homo sapiens uridine monophosphate synthetase (UMPS), transcript variant 3, non-coding RNA"	Chr3	124455213	124456049	+	7372	NR_033437.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
CUST_26754_PI429285431	0.8934644	A	1.0061432	A	0.924869167023721	0	lncRNA	28252-1_{1..2913}	n323804|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058412|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058412|-1.1001100|-0.2859081	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323804|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058412|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058412|-1.1001100|-0.2859081	chrX	134383533	134386445	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26633_PI429285431	0.92074186	A	1.0122172	A	0.938562458262009	0	lncRNA	28136-1_{1..444}	lnc-ROPN1B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ROPN1B-2:2	chr3	125814032	125814475	+	lnc-ROPN1B-2	lnc-ROPN1B-2:2	ENSG00000250012.1	RP11-124N2.1	ALDH1L1	NA	chr3:125822408-125824192	inner
CUST_15177_PI429285431	0.92237765	A	0.96137357	A	0.973332126777017	0	lncRNA	16841-1_{1..2151}	lnc-ATOH8-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATOH8-2:3	chr2	 86130995	 86133145	+	lnc-ATOH8-2	lnc-ATOH8-2:3	XLOC_001558	linc-PTCD3-2	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.81"	NA	inter
CUST_27117_PI429285431	2.4859118	A	3.052342	P	0.67528564752036	0	lncRNA	28651-1_{1..1711}	n324231|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326462|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326462|-1.3725600|-0.3415938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324231|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326462|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326462|-1.3725600|-0.3415938	chr7	 19118621	 19120331	+	NA	NA	NA	NA	NA	"hg19_refFlat_HHLA3:range=chr1:70820635-708322015'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708322015'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80"	NA	inter
CUST_23721_PI429285431	0.9250187	A	0.9713533	A	0.96839356651975	0	lncRNA	25285-1_{1..377}	lnc-MRAP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRAP2-3:1	chr6	 85418986	 85419362	+	lnc-MRAP2-3	lnc-MRAP2-3:1	ENSG00000228290.1	RP11-132M7.3	NA	NA	NA	inter
CUST_20942_PI429285431	2.2998981	A	2.1195195	A	1.13318122195405	0	lncRNA	22573-1_{1..286}	lnc-C15orf48-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C15orf48-2:1	chr15	 45800040	 45800325	+	lnc-C15orf48-2	lnc-C15orf48-2:1	ENSG00000259597.1	RP11-519G16.4	SLC30A4	NA	chr15:45790040-45810215	inner
CUST_27473_PI429285431	1.0408505	A	0.93358773	A	1.07718255450943	0	lncRNA	29044-1_{1..3000}	n324650|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317578|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317578|0.2357880|-0.3477111	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324650|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317578|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317578|0.2357880|-0.3477111	chr22	 46119982	 46122981	+	NA	NA	NA	NA	ATXN10	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00chr22:46109982-46157955"	NA	inner
CUST_28762_PI429285431	2.525221	A	2.6660044	A	0.90702649575023	0	lncRNA	30470-1_{1..554}	n326168|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092800|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092800|-0.8918880|-0.4216653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326168|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092800|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092800|-0.8918880|-0.4216653	chr1	233162032	233162585	-	NA	NA	NA	NA	PCNXL2	NA	chr1:233152032-233175558	inner
CUST_33513_PI429285431	1.5176791	A	1.2833756	A	1.17633869083254	0	lncRNA	35084-1_{1..3000}	n340252|AL162033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2713|NULL|-1.2894300|-0.3879073	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340252|AL162033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2713|NULL|-1.2894300|-0.3879073	chr4	147926643	147929642	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005890	0.91646034	A	0.92407095	A	0.994738616953128	0	lncRNA	TCONS_00015145	NA	NA	NA	NA	XLOC_007189	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007189), lincRNA [TCONS_00015145]"	chr8:118652658-118652599	hs|8q24.11	Agilent_HUMAN_G3V2	TCONS_00015145	TCONS_00015145	chr8	118652599	118652658	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30679_PI429285431	1.3615453	A	1.6138651	A	0.839545371579661	0	lncRNA	32461-1_{1..264}	n336162|X92055|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324533|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324533|0.0565226|-0.0483437	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336162|X92055|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324533|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324533|0.0565226|-0.0483437	chr14	 22392660	 22392923	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47458_PI429285431	6.784939	P	6.952533	P	0.890326251615906	0	lncRNA	51487-1_{1..3000}	"gi|373432686|ref|NR_028436.2| Homo sapiens ubiquitin-conjugating enzyme E2L 3 (UBE2L3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|373432686|ref|NR_028436.2| Homo sapiens ubiquitin-conjugating enzyme E2L 3 (UBE2L3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_028436.2	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013186	3.9418871	P	3.7105644	P	1.17391072761933	0	lncRNA	TCONS_l2_00025728	NA	NA	NA	NA	XLOC_l2_013314	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013314), lincRNA [TCONS_l2_00025728]"	chr7:26439511-26439570	hs|7p15.2	Agilent_HUMAN_G3V2	TCONS_l2_00025728	TCONS_l2_00025728	chr7	 26439511	 26439570	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51089_PI429285431	2.9323113	A	2.1757326	A	1.68947933011525	0	lncRNA	54727-1_{1..209}	hg19_lincRNAsTranscripts_TCONS_l2_00006869 range=chr13:59104272-59104609 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006869 range=chr13:59104272-59104609 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 59104272	 59104480	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24234_PI429285431	0.91342866	A	0.9060196	A	1.00514877868765	0	lncRNA	25785-1_{1..554}	lnc-OIT3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OIT3-2:1	chr10	 74462683	 74463236	+	lnc-OIT3-2	lnc-OIT3-2:1	ENSG00000228673.1	RP11-354E23.2	MCU	NA	chr10:74452683-74473097	inner
CUST_347_PI429201921	1.0714203	A	1.3266354	A	0.837862203486461	0	lncRNA	226-2_{3001..6000}	TC13001311.hg.1	TCONS_00021603-XLOC_010507 // Rinn lincRNAs // linc-C13orf28-1 chr13:+:112967780-112976072 // chr13 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr13:+:112967780-112976072	NA	Affy_HUMAN_HTA2.0	TCONS_00021603-XLOC_010507	linc-C13orf28-1	chr13	112967780	112976072	+	NA	NA	NA	NA	ACOT11	NA	chr1:54990059-54992932	Unknown
CUST_18555_PI429285431	2.642138	A	3.6343286	P	0.502713870345665	0	lncRNA	20266-1_{1..2233}	lnc-SCAF4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SCAF4-1:1	chr21	 33031710	 33033942	-	lnc-SCAF4-1	lnc-SCAF4-1:1	ENSG00000234509	AP000253.1	SOD1	NA	chr21:33031935-33041244	inter
CUST_6898_PI429285431	0.89641446	M	0.89437467	A	1.00141487467948	0	lncRNA	6848-1_{1..463}	"transcript_id ""ENST00000423967.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423967.1"" | genecode_v17"	chr21	 45626408	 45626870	-	ENSG00000232698.1	ENST00000423967.1	AP001058.3	AP001058.3-001	NA	NA	NA	inter
CUST_39507_PI429285431	9.2489195	P	9.1993065	P	1.03498725338259	0	lncRNA	40453-1_{1..2137}	n387276|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ban.1||1.4176500|-0.1368882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387276|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ban.1||1.4176500|-0.1368882	chr3	 46795973	 46798109	-	NA	NA	NA	NA	PRSS44	NA	chr3:46850844-46853976	inter
CUST_8386_PI429285431	6.02083	P	5.9912524	P	1.02071323205312	0	lncRNA	9963-3_{6001..8124}	lnc-OIT3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OIT3-1:1	chr10	 74780855	 74782978	+	lnc-OIT3-1	lnc-OIT3-1:1	ENSG00000247170	ENST00000502140	P4HA1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_P4HA1:range=chr10:74767980-748346415'pad=0,hg19_refFlat_P4HA1:range=chr10:74767980-748346415'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50chr10:74766975-74786047"	NA	inner
CUST_21643_PI429285431	0.9050264	A	1.0258183	A	0.919682695229242	0	lncRNA	23255-1_{1..288}	lnc-DOCK4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DOCK4-1:2	chr7	111990519	111990806	-	lnc-DOCK4-1	lnc-DOCK4-1:2	ENSG00000226851.1	AC004112.4	ZNF277	NA	chr7:111980519-111983989	inter
CUST_44452_PI429285431	0.8983591	A	0.9918094	A	0.937278503516784	0	lncRNA	49058-1_{1..3000}	"gi|359279887|ref|NR_045581.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 10, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|359279887|ref|NR_045581.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 10, non-coding RNA"	Chr4	159442866	159445865	+	59350	NR_045581.1	NA	NA	NA	NA	NA	inter
CUST_35146_PI429285431	0.9103329	A	0.9086037	A	1.00119930870082	0	lncRNA	36548-1_{1..2435}	n342117|AL832096|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4600|NULL|-0.9126520|-0.3480264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342117|AL832096|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4600|NULL|-0.9126520|-0.3480264	chr6	123760748	123763182	+	NA	NA	NA	NA	TRDN	NA	chr6:123750748-123802901	inner
LNCA_21_P0005280	3.22613	P	4.277568	P	0.482487007882708	0	lncRNA	TCONS_00013117	NA	NA	NA	NA	XLOC_006335	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006335), lincRNA [TCONS_00013117]"	chr7:2757526-2757467	hs|7p22.3	Agilent_HUMAN_G3V2	TCONS_00013117	TCONS_00013117	chr7	  2757467	  2757526	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19706_PI429285431	2.448315	A	2.9389615	A	0.711706096839968	0	lncRNA	21363-1_{1..543}	lnc-FAM91A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM91A1-1:1	chr8	124651742	124652284	+	lnc-FAM91A1-1	lnc-FAM91A1-1:1	ENSG00000253286.1	CTD-2552K11.2	KLHL38	NA	chr8:124657915-124661884	inter
CUST_8812_PI429285431	6.000289	P	4.10861	P	3.71066818944637	0	lncRNA	10353-1_{1..3000}	lnc-OSBP2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OSBP2-2:3	chr22	 31371156	 31374155	+	lnc-OSBP2-2	lnc-OSBP2-2:3	ENSG00000253352	TUG1	MORC2	NA	chr22:31361156-31364187	inter
CUST_11452_PI429285431	0.8835582	A	0.9205997	A	0.974651594042618	0	lncRNA	13020-1_{1..3000}	lnc-RP11-1220K2.2.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-1220K2.2.1-1:2	chr7	141919670	141922669	+	lnc-RP11-1220K2.2.1-1	lnc-RP11-1220K2.2.1-1:2	XLOC_006277	linc-MTRNR2L6-3	NA	NA	NA	inter
CUST_49813_PI429285431	0.89796305	A	0.8957676	A	1.00152292845706	0	lncRNA	53567-2_{3001..5629}	hg19_lincRNAsTranscripts_TCONS_l2_00025932 range=chr7:63539999-63546016 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025932 range=chr7:63539999-63546016 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 63542999	 63545627	+	NA	NA	NA	NA	ZNF727	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50chr7:63529999-63538927"	NA	inter
CUST_40549_PI429285431	3.1005406	P	3.3077738	P	0.866196831362344	0	lncRNA	41307-1_{1..1562}	n409690|NR_034091|lncRNA|Homosapiens||RefGeneNoncode|NR_034091||-0.4259350|-0.2189415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n409690|NR_034091|lncRNA|Homosapiens||RefGeneNoncode|NR_034091||-0.4259350|-0.2189415	chr1	 94057524	 94059085	+	NA	NA	NA	NA	BCAR3	"hg19_refFlat_BCAR3:range=chr1:94027798-940794875'pad=0,hg19_refFlat_BCAR3:range=chr1:94027798-940794875'pad=0 3'pad=0 strand=- repeatMasking=none,-98.20;hg19_refFlat_BCAR3:range=chr1:94027798-941404865'pad=0,hg19_refFlat_BCAR3:range=chr1:94027798-941404865'pad=0 3'pad=0 strand=- repeatMasking=none,-98.20chr1:94047524-94075587"	NA	inner
CUST_46890_PI429285431	0.88658834	A	0.8923714	A	0.995999511624995	0	lncRNA	51013-1_{1..2905}	"gi|231569501|ref|NR_027647.1| Homo sapiens lactoperoxidase (LPO), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|231569501|ref|NR_027647.1| Homo sapiens lactoperoxidase (LPO), transcript variant 2, non-coding RNA"	Chr17	 56315787	 56318691	+	4025	NR_027647.1	NA	NA	NA	NA	NA	inter
CUST_33880_PI429285431	3.262702	A	1.5918484	A	3.18402927378694	0	lncRNA	35424-1_{1..2825}	n340670|AK123519|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3133|NULL|-0.4158630|-0.3309032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340670|AK123519|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3133|NULL|-0.4158630|-0.3309032	chr5	142605732	142608556	+	NA	NA	NA	NA	ARHGAP26	"hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90chr5:142595732-142608572"	NA	inner
CUST_9747_PI429285431	7.3042674	P	7.7175646	P	0.750905258543313	0	lncRNA	11264-1_{1..1742}	lnc-SEPT9-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEPT9-1:3	chr17	 75253744	 75255485	+	lnc-SEPT9-1	lnc-SEPT9-1:3	XLOC_012315	linc-SEPT9	NA	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90"	NA	inter
CUST_6293_PI429285431	0.91566163	A	0.901195	A	1.01007794768066	0	lncRNA	6217-1_{1..388}	"transcript_id ""ENST00000591918.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591918.2"" | genecode_v17"	chr19	   786650	   787037	+	ENSG00000266927.2	ENST00000591918.2	AC006273.7	AC006273.7-001	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50"	NA	inter
CUST_18033_PI429285431	5.1966043	P	5.2541533	P	0.9608952018586	0	lncRNA	19768-1_{1..317}	lnc-PEAK1.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PEAK1.1-1:5	chr15	 77712348	 77712664	-	lnc-PEAK1.1-1	lnc-PEAK1.1-1:5	XLOC_011535	linc-PEAK1	HMG20A	NA	chr15:77702348-77722518	inner
CUST_51117_PI429285431	3.8026302	P	3.8509126	P	0.967087008867149	0	lncRNA	54754-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00007006 range=chr13:111461359-111472540 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007006 range=chr13:111461359-111472540 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	111461359	111464358	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37891_PI429285431	5.4753146	P	5.089003	P	1.30704752562623	0	lncRNA	38981-1_{1..1671}	n346426|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1976|NULL|-1.4842700|-0.2344924	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346426|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1976|NULL|-1.4842700|-0.2344924	chr17	 28927454	 28929124	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8488_PI429285431	6.218534	P	6.693427	P	0.719520152496586	0	lncRNA	10052-1_{1..2795}	lnc-SIRPA-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SIRPA-3:1	chr20	  1626682	  1629476	+	lnc-SIRPA-3	lnc-SIRPA-3:1	ENSG00000237914	RP11-77C3.3	SIRPG	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20chr20:1616682-1638425"	NA	inner
CUST_42260_PI429285431	16.672878	P	16.660505	P	1.00861319197373	0	lncRNA	44717-1_{1..152}	ENST00000363564 ncrna:rRNA chromosome:GRCh37:16:33965426:33965577:1 gene:ENSG00000200434 gene_biotype:rRNA transcript_biotype:rRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363564 ncrna:rRNA chromosome:GRCh37:16:33965426:33965577:1 gene:ENSG00000200434 gene_biotype:rRNA transcript_biotype:rRNA	chr16	 33965426	 33965577	+	ENSG00000200434	ENST00000363564	NA	NA	NA	NA	NA	inter
CUST_9470_PI429285431	0.8863998	A	0.8849569	A	1.00100064237569	0	lncRNA	10976-1_{1..869}	lnc-MEX3B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MEX3B-2:2	chr15	 82259409	 82260277	-	lnc-MEX3B-2	lnc-MEX3B-2:2	XLOC_011550	linc-TMC3-3	NA	NA	NA	inter
CUST_6877_PI429285431	2.3632498	A	1.0807029	A	2.43268057748445	0	lncRNA	6828-1_{1..560}	"transcript_id ""ENST00000457881.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457881.1"" | genecode_v17"	chr21	 43132317	 43132876	-	ENSG00000236384.3	ENST00000457881.1	LINC00479	LINC00479-002	NA	NA	NA	inter
CUST_4079_PI429285431	1.2222497	A	0.95959234	A	1.19968642307021	0	lncRNA	4040-1_{1..832}	"transcript_id ""ENST00000524772.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524772.1"" | genecode_v17"	chr11	112658027	112658858	+	ENSG00000254626.1	ENST00000524772.1	RP11-27G22.1	RP11-27G22.1-001	NA	NA	NA	inter
CUST_45165_PI429285431	0.9175052	A	0.9084543	A	1.00629332609902	0	lncRNA	49640-2_{3001..3705}	"gi|310120193|ref|XR_110875.1| PREDICTED: Homo sapiens uncharacterized LOC100507403 (LOC100507403), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310120193|ref|XR_110875.1| PREDICTED: Homo sapiens uncharacterized LOC100507403 (LOC100507403), misc_RNA"	NA	NA	NA	NA	NA	XR_110875.1	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60"	NA	Unknown
CUST_24029_PI429285431	5.658869	P	6.3182545	P	0.633147921915463	0	lncRNA	25581-1_{1..766}	lnc-CCDC90B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC90B-1:1	chr11	 82924332	 82925097	-	lnc-CCDC90B-1	lnc-CCDC90B-1:1	ENSG00000254551.1	RP11-727A23.7	ANKRD42	"hg19_refFlat_CKS1B:range=chr1:154947222-1549512535'pad=0,hg19_refFlat_CKS1B:range=chr1:154947222-1549512535'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RPL32:range=chr3:12877593-128817365'pad=0,hg19_refFlat_RPL32:range=chr3:12877593-128817365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20chr11:82914332-82934421"	NA	inner
LNCA_21_P0012393	2.0347989	A	2.476574	A	0.736228191868922	0	lncRNA	TCONS_l2_00018854	NA	NA	NA	NA	XLOC_l2_009883	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009883), lincRNA [TCONS_l2_00018854]"	chr3:129839533-129839592	hs|3q22.1	Agilent_HUMAN_G3V2	TCONS_l2_00018854	TCONS_l2_00018854	chr3	129839533	129839592	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35918_PI429285431	4.94044	P	4.5014315	P	1.35567231406023	0	lncRNA	37287-1_{1..3000}	n344562|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_110|NULL|-1.3783200|-0.3338889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344562|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_110|NULL|-1.3783200|-0.3338889	chr4	165798149	165801148	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.60;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30"	NA	inter
CUST_9566_PI429285431	1.299149	A	1.4424927	A	0.90541825528822	0	lncRNA	11081-1_{1..544}	lnc-TIAM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TIAM1-1:1	chr21	 32361734	 32362277	-	lnc-TIAM1-1	lnc-TIAM1-1:1	XLOC_014050	linc-KRTAP11-1	NA	NA	NA	inter
CUST_32839_PI429285431	0.9101608	A	0.9116973	A	0.998935546290271	0	lncRNA	34473-1_{1..2341}	n339494|AL355687|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1934|NULL|-1.2307800|-0.3280839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339494|AL355687|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1934|NULL|-1.2307800|-0.3280839	chr21	 38979268	 38981608	-	NA	NA	NA	NA	NA	"hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80"	NA	inter
CUST_32085_PI429285431	0.9010264	A	0.8951596	A	1.00407483553669	0	lncRNA	33792-1_{1..3000}	n338649|BX538340|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1063|NULL|-0.9940940|-0.2198391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338649|BX538340|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1063|NULL|-0.9940940|-0.2198391	chr2	  9246721	  9249720	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30"	NA	inter
LNCA_21_P0002811	0.90060574	A	0.8944491	A	1.00427657622157	0	lncRNA	XR_108518	XR_108518	XR_108518	NA	Hs.518427	LOC100505609	uncharacterized LOC100505609	ENST00000488262	THC2608756	NA	"PREDICTED: Homo sapiens hypothetical LOC100505609, transcript variant 1 (LOC100505609), miscRNA [XR_108518]"	chr3:180140187-180140246	hs|3q26.33	Agilent_HUMAN_G3V2	XR_108518	XR_108518	chr3	180140187	180140246	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006065	0.9018729	A	0.89561015	A	1.00435044332685	0	lncRNA	ENST00000438147	NA	NA	NA	NA	XLOC_007633	NA	ENST00000438147	NA	NA	"BROAD Institute lincRNA (XLOC_007633), lincRNA [TCONS_00015789]"	chr9:3684138-3684079	hs|9p24.2	Agilent_HUMAN_G3V2	ENST00000438147	ENST00000438147	chr9	  3684079	  3684138	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011737	2.231368	A	2.255755	A	0.983238286984089	0	lncRNA	TCONS_l2_00013007	NA	NA	NA	NA	XLOC_l2_006996	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006996), lincRNA [TCONS_l2_00013007]"	chr19:29804839-29778446	hs|19q12	Agilent_HUMAN_G3V2	TCONS_l2_00013007	TCONS_l2_00013007	chr19	 29778446	 29804839	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14026_PI429285431	3.6497161	P	3.5086036	P	1.10275515152393	0	lncRNA	15674-1_{1..392}	lnc-ETV3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ETV3-2:2	chr1	157257772	157258163	-	lnc-ETV3-2	lnc-ETV3-2:2	XLOC_001052	linc-ETV3-1	NA	NA	NA	inter
CUST_4557_PI429285431	2.4485695	A	3.4145086	P	0.511945060322565	0	lncRNA	4506-1_{1..664}	"transcript_id ""ENST00000411525.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411525.1"" | genecode_v17"	chr13	 21899764	 21900427	-	ENSG00000224429.2	ENST00000411525.1	LINC00422	LINC00422-002	ZDHHC20	NA	chr13:21932515-21932860	inter
CUST_13644_PI429285431	0.90043676	A	0.92766577	A	0.981303281726599	0	lncRNA	15282-1_{1..2663}	lnc-COL28A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL28A1-1:2	chr7	  7606080	  7608742	-	lnc-COL28A1-1	lnc-COL28A1-1:2	XLOC_006350	linc-COL28A1	MIOS	NA	chr7:7606616-7616235	inter
CUST_38445_PI429285431	6.470724	P	6.4283156	P	1.02983156824301	0	lncRNA	39468-2_{3001..3736}	n382691|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bkc.3||1.7051100|-0.1145597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382691|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bkc.3||1.7051100|-0.1145597	chr15	 84871725	 84872460	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16457_PI429285431	0.9037498	A	1.6471527	A	0.597328763727089	0	lncRNA	18155-1_{1..503}	lnc-RPIA-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPIA-3:3	chr2	 89113894	 89114396	+	lnc-RPIA-3	lnc-RPIA-3:3	XLOC_001564	linc-TEKT4-7	NA	"hg19_refFlat_MALL:range=chr2:110843272-1108733695'pad=0,hg19_refFlat_MALL:range=chr2:110843272-1108733695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90"	NA	inter
CUST_21521_PI429285431	1.6982535	A	1.0091871	A	1.61223986457426	0	lncRNA	23139-1_{1..2508}	lnc-KLRF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-KLRF1-1:1	chr12	  9812237	  9814744	+	lnc-KLRF1-1	lnc-KLRF1-1:1	ENSG00000257027.1	RP11-705C15.3	CLEC2D	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20chr12:9822308-9824681"	NA	inter
CUST_23822_PI429285431	0.9044629	A	0.91133606	A	0.995247218903334	0	lncRNA	25385-1_{1..501}	lnc-RP11-116D17.1.1-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-116D17.1.1-10:1	chr12	116400437	116400937	+	lnc-RP11-116D17.1.1-10	lnc-RP11-116D17.1.1-10:1	ENSG00000258034.1	RP11-493P1.2	MED13L	"hg19_refFlat_MED13L:range=chr12:116399071-1167149365'pad=0,hg19_refFlat_MED13L:range=chr12:116399071-1167149365'pad=0 3'pad=0 strand=- repeatMasking=none,-94.50chr12:116396381-116410538"	NA	inner
CUST_34752_PI429285431	4.772376	P	5.3962216	P	0.648938830435984	0	lncRNA	36195-1_{1..771}	n341661|BC064958|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4132|NULL|-1.2671700|-0.1970262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341661|BC064958|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4132|NULL|-1.2671700|-0.1970262	chr9	 21324050	 21324820	-	NA	NA	NA	NA	KLHL9	NA	chr9:21331018-21335429	inner
CUST_38749_PI429285431	1.4664068	A	1.5678837	A	0.932078325933149	0	lncRNA	39740-1_{1..2513}	n384290|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003dwh.1||0.1692120|-0.3332782	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384290|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003dwh.1||0.1692120|-0.3332782	chr3	106967787	106970299	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20"	NA	inter
CUST_39249_PI429285431	3.189682	P	2.0211294	A	2.2478606462912	0	lncRNA	40220-1_{1..611}	n386115|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bki.1||-1.0402200|-0.2434042	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386115|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bki.1||-1.0402200|-0.2434042	chr15	 75288944	 75289554	+	NA	NA	NA	NA	SCAMP5	NA	chr15:75287876-75299555	inner
CUST_48684_PI429285431	0.9014753	A	0.910687	A	0.99363527732091	0	lncRNA	52525-1_{1..1774}	hg19_lincRNAsTranscripts_TCONS_l2_00013868 range=chr2:105275771-105282602 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013868 range=chr2:105275771-105282602 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	105275771	105277544	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34140_PI429285431	3.4711463	P	4.75275	P	0.411338011015745	0	lncRNA	35660-1_{1..3000}	n340980|AL833334|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3446|NULL|0.3614670|-0.1909833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340980|AL833334|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3446|NULL|0.3614670|-0.1909833	chr11	 16798845	 16801844	-	NA	NA	NA	NA	PLEKHA7	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50chr11:16809207-16812232"	NA	inter
CUST_264_PI429201921	5.2844563	P	5.3182025	P	0.976880367378026	0	lncRNA	193-2_{3001..6000}	TC19002515.hg.1	TCONS_l2_00013151-XLOC_l2_007074 // Broad TUCP // linc-EXOC3L2 chr19:-:45742029-45748605 // chr19 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr19:-:45742029-45748605	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00013151-XLOC_l2_007074	linc-EXOC3L2	chr19	 45742029	 45748605	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37257_PI429285431	2.771573	A	3.4440475	P	0.627429601149267	0	lncRNA	38364-1_{1..2102}	n345691|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1240|NULL|-1.3260500|-0.2260943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345691|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1240|NULL|-1.3260500|-0.2260943	chr11	 15574304	 15576405	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10"	NA	inter
CUST_7004_PI429285431	1.234273	A	1.4652548	A	0.852054843916378	0	lncRNA	6951-1_{1..372}	"transcript_id ""ENST00000457518.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457518.1"" | genecode_v17"	chr22	 48440527	 48440898	-	ENSG00000235154.1	ENST00000457518.1	CTA-280A3__B.2	CTA-280A3__B.2-001	NA	NA	NA	inter
CUST_43573_PI429285431	8.643198	P	8.03206	P	1.52746359945103	0	lncRNA	48345-3_{6001..9000}	"gi|410170851|ref|XR_110613.3| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170851|ref|XR_110613.3| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	XR_110613.3	NA	NA	NA	NA	NA	Unknown
CUST_39750_PI429285431	5.3527117	P	5.9145045	P	0.677459778594439	0	lncRNA	40672-1_{1..1064}	n405888|NR_003129_4|lncRNA|Homosapiens||RefGeneNoncode|NR_003129_4||-0.0855814|-0.2796868	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405888|NR_003129_4|lncRNA|Homosapiens||RefGeneNoncode|NR_003129_4||-0.0855814|-0.2796868	chr6	  3489055	  3490118	+	NA	NA	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30"	NA	inter
CUST_51037_PI429285431	5.3205767	P	4.29486	P	2.03597055959172	0	lncRNA	54679-1_{1..252}	hg19_lincRNAsTranscripts_TCONS_l2_00006702 range=chr13:19953040-19955755 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006702 range=chr13:19953040-19955755 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 19953040	 19953291	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33418_PI429285431	8.6159	P	8.33185	P	1.21760821701687	0	lncRNA	34998-1_{1..3000}	n340147|BC045633|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2607|NULL|0.6375160|-0.1740008	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340147|BC045633|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2607|NULL|0.6375160|-0.1740008	chr10	115800690	115803689	-	NA	NA	NA	NA	ADRB1	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ADRB1:range=chr10:115803892-1158053255'pad=0,hg19_refFlat_ADRB1:range=chr10:115803892-1158053255'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.10chr10:115803806-115806667"	NA	inner
CUST_52202_PI429285431	1.1211449	A	1.2212086	A	0.932991795797041	0	lncRNA	55718-1_{1..247}	hg19_lincRNAsTranscripts_TCONS_l2_00018032 range=chr22:35589931-35590965 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018032 range=chr22:35589931-35590965 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 35589931	 35590177	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011755	4.4630013	P	4.6119847	P	0.901885755639389	0	lncRNA	TCONS_l2_00013151	NA	NA	NA	NA	XLOC_l2_007074	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007074), lincRNA [TCONS_l2_00013151]"	chr19:45742313-45742254	hs|19q13.32	Agilent_HUMAN_G3V2	TCONS_l2_00013151	TCONS_l2_00013151	chr19	 45742254	 45742313	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47999_PI429285431	8.542812	P	8.572433	P	0.979677627822498	0	lncRNA	51884-2_{3001..4484}	"gi|410173147|ref|XR_172131.1| PREDICTED: Homo sapiens putative NPIP-like protein LOC100132247-like (LOC101060576), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410173147|ref|XR_172131.1| PREDICTED: Homo sapiens putative NPIP-like protein LOC100132247-like (LOC101060576), misc_RNA"	NA	NA	NA	NA	NA	XR_172131.1	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80"	NA	Unknown
CUST_14992_PI429285431	8.410981	P	8.311648	P	1.07127806492874	0	lncRNA	16655-1_{1..393}	lnc-CXCR3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CXCR3-5:1	chrX	 71091168	 71091560	-	lnc-CXCR3-5	lnc-CXCR3-5:1	XLOC_008183	linc-CXorf49B-1	NA	NA	NA	inter
CUST_29382_PI429285431	8.355337	P	7.091993	P	2.40051508164104	0	lncRNA	31134-1_{1..376}	n332652|AB050778|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059568|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059568|-1.2635700|-0.2239085	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332652|AB050778|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059568|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059568|-1.2635700|-0.2239085	chrX	102931907	102932282	-	NA	NA	NA	NA	MORF4L2	NA	chrX:102930426-102943086	inner
CUST_36553_PI429285431	1.1022308	A	1.8272669	A	0.604981906192003	0	lncRNA	37749-1_{1..1586}	n345051|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_600|NULL|-1.2581500|-0.4121488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345051|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_600|NULL|-1.2581500|-0.4121488	chr9	 74956805	 74958390	-	NA	NA	NA	NA	ZFAND5	NA	chr9:74966341-74975762	inter
CUST_34736_PI429285431	1.681051	A	0.904227	A	1.71335487793699	0	lncRNA	36181-1_{1..3000}	n341643|AK055212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4114|NULL|-1.2515500|-0.3806187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341643|AK055212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4114|NULL|-1.2515500|-0.3806187	chr9	  2042993	  2045992	+	NA	NA	NA	NA	SMARCA2	NA	chr9:2032993-2056019	inner
LNCA_21_P0010303	8.792706	P	8.753831	P	1.02731242568387	0	lncRNA	TCONS_00029182	NA	NA	NA	NA	XLOC_014122	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014122), lincRNA [TCONS_00029182]"	chr21:46475990-46475931	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029182	TCONS_00029182	chr21	 46475931	 46475990	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2195_PI429285431	0.8893875	A	0.8976847	A	0.99426532559479	0	lncRNA	2187-1_{1..941}	"transcript_id ""ENST00000513379.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513379.1"" | genecode_v17"	chr5	 72509781	 72510721	+	ENSG00000249743.1	ENST00000513379.1	RP11-60A8.1	RP11-60A8.1-001	NA	NA	NA	inter
LNCA_21_P0009566	0.90265584	A	0.9194022	A	0.988459417128154	0	lncRNA	TCONS_00026542	NA	NA	NA	NA	XLOC_012863	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012863), lincRNA [TCONS_00026542]"	chr18:59568387-59568328	hs|18q21.33	Agilent_HUMAN_G3V2	TCONS_00026542	TCONS_00026542	chr18	 59568328	 59568387	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11176_PI429285431	6.0169187	P	6.5517106	P	0.690258235077147	0	lncRNA	12733-1_{1..474}	lnc-DHCR7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHCR7-1:1	chr11	 71213677	 71214150	-	lnc-DHCR7-1	lnc-DHCR7-1:1	XLOC_009493	linc-DHCR7-2	NADSYN1	NA	chr11:71203677-71212584	inter
CUST_39643_PI429285431	0.91828185	A	0.926522	A	0.994304643646601	0	lncRNA	40581-1_{1..1286}	n405219|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000314911||-0.9468300|-0.2753248	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405219|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000314911||-0.9468300|-0.2753248	chr22	 17338037	 17339322	+	NA	NA	NA	NA	GAB4	NA	chr22:17406940-17408742	inter
CUST_23091_PI429285431	1.9395294	A	2.2225964	A	0.821842019357516	0	lncRNA	24663-1_{1..363}	lnc-ATG14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATG14-1:1	chr14	 55806153	 55806515	-	lnc-ATG14-1	lnc-ATG14-1:1	ENSG00000258455.1	RP11-665C16.5	FBXO34	NA	chr14:55796153-55816219	inner
CUST_5561_PI429285431	0.95441085	A	0.9201676	A	1.02401954381366	0	lncRNA	5491-1_{1..3000}	"transcript_id ""ENST00000576365.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000576365.1"" | genecode_v17"	chr16	 55572112	 55575111	+	ENSG00000261997.1	ENST00000576365.1	RP11-212I21.4	RP11-212I21.4-001	LPCAT2	NA	chr16:55562112-55585939	inner
CUST_6142_PI429285431	0.90866435	A	1.0701298	A	0.894116390626493	0	lncRNA	6068-1_{1..387}	"transcript_id ""ENST00000583580.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583580.1"" | genecode_v17"	chr18	 28534786	 28535172	-	ENSG00000265670.1	ENST00000583580.1	RP11-25I11.1	RP11-25I11.1-001	DSC3	NA	chr18:28570052-28570883	inter
CUST_18105_PI429285431	0.9107598	A	1.0945123	A	0.880410038407953	0	lncRNA	19839-1_{1..507}	lnc-QRSL1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-QRSL1-1:2	chr6	107147717	107148223	+	lnc-QRSL1-1	lnc-QRSL1-1:2	XLOC_005413	linc-C6orf203-2	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90"	NA	inter
CUST_42515_PI429285431	1.7777545	A	2.3874142	A	0.655351266635857	0	lncRNA	45301-1_{1..134}	ENST00000384171 ncrna:snoRNA chromosome:GRCh37:2:10436173:10436306:-1 gene:ENSG00000206898 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384171 ncrna:snoRNA chromosome:GRCh37:2:10436173:10436306:-1 gene:ENSG00000206898 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 10436173	 10436306	-	ENSG00000206898	ENST00000384171	NA	NA	HPCAL1	NA	chr2:10443040-10446306	inter
LNCA_21_P0013233	1.6853127	A	0.9252955	A	1.69351081486334	0	lncRNA	AK126699	NA	AK126699	NA	Hs.676517	INTS4L2	integrator complex subunit 4-like 2	NA	NA	GO:0005488	"BROAD Institute lincRNA (XLOC_l2_013459), lincRNA [TCONS_l2_00025975]"	chr7:65183720-65183779	hs|7q11.21	Agilent_HUMAN_G3V2	AK126699	AK126699	chr7	 65183720	 65183779	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24678_PI429285431	10.4329405	P	9.705155	P	1.65609507603135	0	lncRNA	26225-1_{1..196}	lnc-SLC38A8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC38A8-1:1	chr16	 83964695	 83964890	-	lnc-SLC38A8-1	lnc-SLC38A8-1:1	ENSG00000260932.1	RP11-483P21.6	NA	NA	NA	inter
CUST_42695_PI429285431	9.71673	P	9.368134	P	1.27332085549703	0	lncRNA	45620-1_{1..133}	ENST00000459229 ncrna:snoRNA chromosome:GRCh37:9:95054743:95054875:-1 gene:ENSG00000239183 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459229 ncrna:snoRNA chromosome:GRCh37:9:95054743:95054875:-1 gene:ENSG00000239183 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	 95054743	 95054875	-	ENSG00000239183	ENST00000459229	NA	NA	IARS	NA	chr9:95044743-95056038	inter
CUST_47100_PI429285431	2.665012	A	1.2388358	A	2.68733504243712	0	lncRNA	51181-1_{1..2281}	"gi|223718177|ref|NR_026887.1| Homo sapiens CEBPA antisense RNA 1 (head to head) (CEBPA-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223718177|ref|NR_026887.1| Homo sapiens CEBPA antisense RNA 1 (head to head) (CEBPA-AS1), non-coding RNA"	Chr19	 33793763	 33796043	+	80054	NR_026887.1	NA	NA	NA	NA	NA	inter
CUST_25635_PI429285431	0.91417575	A	0.90914196	A	1.00349525154133	0	lncRNA	27165-1_{1..589}	lnc-PSMB11-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PSMB11-1:3	chr14	 23467315	 23467903	+	lnc-PSMB11-1	lnc-PSMB11-1:3	ENSG00000258457.1	RP11-298I3.4	C14orf93	NA	chr14:23457315-23477632	inner
CUST_15453_PI429285431	0.92163396	A	0.9392965	A	0.987831897636996	0	lncRNA	17141-1_{1..2747}	lnc-FAM201A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM201A-1:3	chr9	 38661300	 38664046	+	lnc-FAM201A-1	lnc-FAM201A-1:3	XLOC_007352	linc-FAM75A1-4	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30"	NA	inter
CUST_48976_PI429285431	15.351799	P	15.365438	P	0.990590712606216	0	lncRNA	52815-1_{1..956}	hg19_lincRNAsTranscripts_TCONS_l2_00019084 range=chr3:195273309-195281946 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019084 range=chr3:195273309-195281946 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	195273309	195274264	+	NA	NA	NA	NA	APOD	"hg19_refFlat_DENND1B:range=chr1:197704778-1977442855'pad=0,hg19_refFlat_DENND1B:range=chr1:197704778-1977442855'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50chr3:195281388-195291946"	NA	inter
CUST_49282_PI429285431	8.346738	P	8.092653	P	1.19257913405426	0	lncRNA	53101-1_{1..335}	hg19_lincRNAsTranscripts_TCONS_l2_00022725 range=chr5:767618-769262 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022725 range=chr5:767618-769262 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	   767618	   767952	-	NA	NA	NA	NA	ZDHHC11B	NA	chr5:757618-762215	inter
CUST_34668_PI429285431	1.3334637	A	0.9038563	A	1.34686700463393	0	lncRNA	36120-1_{1..2469}	n341571|AK093137|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4042|NULL|-1.1361100|-0.3189667	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341571|AK093137|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4042|NULL|-1.1361100|-0.3189667	chr8	102996659	102999127	+	NA	NA	NA	NA	NCALD	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr8:102986659-103017078"	NA	inner
CUST_174_PI429201921	1.1703012	A	2.7542682	A	0.333563422214187	0	lncRNA	146-1_{1..3000}	TC03002351.hg.1	TCONS_00005520-XLOC_002664 // Rinn lincRNAs // linc-CCDC66-1 chr3:+:55330227-55334766 // chr3 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr3:+:55330227-55334766	NA	Affy_HUMAN_HTA2.0	TCONS_00005520-XLOC_002664	linc-CCDC66-1	chr3	 55330227	 55334766	+	NA	NA	NA	NA	CAMTA1	NA	chr1:7750764-7771030	Unknown
CUST_4018_PI429285431	0.901299	A	0.9097408	A	0.994165676287597	0	lncRNA	3979-1_{1..559}	"transcript_id ""ENST00000532413.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532413.1"" | genecode_v17"	chr11	 76339140	 76339698	-	ENSG00000255363.1	ENST00000532413.1	RP11-672A2.5	RP11-672A2.5-001	NA	NA	NA	inter
CUST_3528_PI429285431	0.91158813	A	1.3279954	A	0.749288248405672	0	lncRNA	3497-1_{1..769}	"transcript_id ""ENST00000374014.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000374014.3"" | genecode_v17"	chr9	118650448	118651216	-	ENSG00000204148.3	ENST00000374014.3	LINC00474	LINC00474-001	NA	NA	NA	inter
CUST_39986_PI429285431	2.6417043	A	3.8065803	P	0.446002592097149	0	lncRNA	40855-1_{1..3000}	n407092|NR_024593|lncRNA|Homosapiens||RefGeneNoncode|NR_024593||3.4704200|-0.1636103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407092|NR_024593|lncRNA|Homosapiens||RefGeneNoncode|NR_024593||3.4704200|-0.1636103	chr22	 25041132	 25044131	-	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0,hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10"	NA	inter
CUST_28580_PI429285431	1.5297627	A	0.91283	A	1.53361111687809	0	lncRNA	30260-1_{1..579}	n325941|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048937|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048937|-0.8905680|-0.2760039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325941|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048937|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048937|-0.8905680|-0.2760039	chr10	 80125824	 80126402	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_52227_PI429285431	4.178999	P	4.4543805	P	0.826231804120371	0	lncRNA	55740-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00031172 range=chr1_gl000192_random:222732-373960 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00031172 range=chr1_gl000192_random:222732-373960 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1_gl000192_random	   222732	   225731	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40402_PI429285431	4.1138964	P	2.9943776	A	2.17274490157949	0	lncRNA	41190-1_{1..2644}	n409264|NR_033436|lncRNA|Homosapiens||RefGeneNoncode|NR_033436||5.7379500|-0.1405007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409264|NR_033436|lncRNA|Homosapiens||RefGeneNoncode|NR_033436||5.7379500|-0.1405007	chr7	 11013498	 11016141	+	NA	NA	NA	NA	PHF14	NA	chr7:11013499-11209250	inter
LNCA_19_P00802450	2.9679756	A	3.4213843	P	0.73031526949822	0	lncRNA	TCONS_l2_00029068	NA	NA	NA	NA	XLOC_l2_015037	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015037), lincRNA [TCONS_l2_00029068]"	chr9:132271169-132271228	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_l2_00029068	TCONS_l2_00029068	chr9	132271169	132271228	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14561_PI429285431	2.4064755	A	2.0883741	A	1.24668881487393	0	lncRNA	16231-1_{1..1420}	lnc-CDH11-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH11-3:6	chr16	 65397566	 65398985	-	lnc-CDH11-3	lnc-CDH11-3:6	XLOC_011977	linc-CDH11-7	NA	NA	NA	inter
LNCA_21_P0012429	0.90573394	A	0.9046242	A	1.00076950907246	0	lncRNA	TCONS_l2_00019107	NA	NA	NA	NA	XLOC_l2_010075	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010075), lincRNA [TCONS_l2_00019107]"	chr3:196192453-196192512	hs|3q29	Agilent_HUMAN_G3V2	TCONS_l2_00019107	TCONS_l2_00019107	chr3	196192453	196192512	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14961_PI429285431	4.0735335	P	4.484187	P	0.752282533830894	0	lncRNA	16624-1_{1..281}	lnc-ZNF673-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF673-2:1	chrX	 45993665	 45993945	+	lnc-ZNF673-2	lnc-ZNF673-2:1	XLOC_007967	linc-ZNF673-3	NA	NA	NA	inter
CUST_6641_PI429285431	0.88924533	A	0.8887311	A	1.0003565006059	0	lncRNA	6587-1_{1..729}	"transcript_id ""ENST00000418690.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418690.1"" | genecode_v17"	chr20	 10733926	 10734654	-	ENSG00000234900.1	ENST00000418690.1	RP1-278O22.2	RP1-278O22.2-001	NA	NA	NA	inter
CUST_30530_PI429285431	7.275002	P	7.1043463	P	1.12556993616966	0	lncRNA	32310-1_{1..374}	n335695|CR618512|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000297707|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000297707|-1.3935900|-0.0520565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335695|CR618512|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000297707|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000297707|-1.3935900|-0.0520565	chr17	 80197156	 80197529	-	NA	NA	NA	NA	CSNK1D	NA	chr17:80200537-80207530	inner
CUST_36798_PI429285431	1.4131674	A	1.1695613	A	1.18394831351394	0	lncRNA	37970-1_{1..938}	n345277|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_826|NULL|-1.3344700|-0.3121175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345277|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_826|NULL|-1.3344700|-0.3121175	chr14	 81881290	 81882227	-	NA	NA	NA	NA	NA	NA	NA	inner
CUST_20143_PI429285431	0.9127744	A	0.916978	A	0.997090527255174	0	lncRNA	21788-1_{1..2183}	lnc-KIAA1429-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-KIAA1429-1:1	chr8	 95649513	 95651695	-	lnc-KIAA1429-1	lnc-KIAA1429-1:1	ENSG00000261437.1	RP11-22C11.2	ESRP1	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00chr8:95653364-95661695"	NA	inter
CUST_13901_PI429285431	2.0714316	A	1.416584	A	1.57444962637486	0	lncRNA	15548-1_{1..301}	lnc-RPS24-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPS24-1:1	chr10	 79952484	 79952784	+	lnc-RPS24-1	lnc-RPS24-1:1	XLOC_008525	linc-ZMIZ1-2	NA	NA	NA	inter
CUST_9309_PI429285431	2.4750042	A	2.557515	A	0.944412603465725	0	lncRNA	10815-1_{1..503}	lnc-CELF2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CELF2-2:1	chr10	 11497046	 11497548	+	lnc-CELF2-2	lnc-CELF2-2:1	XLOC_008391	linc-ECHDC3-2	USP6NL	NA	chr10:11502509-11507386	inter
CUST_9979_PI429285431	2.2752101	A	1.914179	A	1.28434349512617	0	lncRNA	11503-1_{1..2854}	lnc-KATNAL1-3:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-KATNAL1-3:14	chr13	 30938206	 30941059	-	lnc-KATNAL1-3	lnc-KATNAL1-3:14	XLOC_010556	linc-KATNAL1-3	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40"	NA	inter
CUST_12089_PI429285431	1.57697	A	0.8866813	A	1.61360638747975	0	lncRNA	13683-1_{1..453}	lnc-RNASEH2B-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNASEH2B-3:3	chr13	 51007549	 51008001	+	lnc-RNASEH2B-3	lnc-RNASEH2B-3:3	XLOC_010390	linc-RNASEH2B-1	NA	NA	NA	inter
CUST_41496_PI429285431	5.0097585	P	4.7997017	P	1.15673372449448	0	lncRNA	42711-1_{1..99}	ENST00000582606 ncrna:miRNA chromosome:GRCh37:1:38554903:38555001:1 gene:ENSG00000265596 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582606 ncrna:miRNA chromosome:GRCh37:1:38554903:38555001:1 gene:ENSG00000265596 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 38554903	 38555001	+	ENSG00000265596	ENST00000582606	NA	NA	NA	NA	NA	inter
CUST_6485_PI429285431	4.9354157	P	5.248277	P	0.805043530394526	0	lncRNA	6427-1_{1..552}	"transcript_id ""ENST00000567313.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567313.1"" | genecode_v17"	chr19	 36282869	 36283420	-	ENSG00000225872.2	ENST00000567313.1	AC002398.5	AC002398.5-003	ARHGAP33	NA	chr19:36272869-36279724	inter
CUST_41976_PI429285431	0.8802089	A	1.1637686	A	0.821561397038717	0	lncRNA	43792-1_{1..79}	ENST00000580160 ncrna:miRNA chromosome:GRCh37:1:228649775:228649853:1 gene:ENSG00000266174 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580160 ncrna:miRNA chromosome:GRCh37:1:228649775:228649853:1 gene:ENSG00000266174 gene_biotype:miRNA transcript_biotype:miRNA	chr1	228649775	228649853	+	ENSG00000266174	ENST00000580160	NA	NA	HIST3H2A	NA	chr1:228645065-228645560	inter
CUST_13751_PI429285431	0.90096885	A	0.9106516	A	0.993310901426263	0	lncRNA	15396-1_{1..323}	lnc-MRPS27-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPS27-2:1	chr5	 71374068	 71374390	-	lnc-MRPS27-2	lnc-MRPS27-2:1	XLOC_004871	linc-GTF2H2-5	NA	NA	NA	inter
CUST_26902_PI429285431	2.0086708	A	1.0788957	A	1.9049790080466	0	lncRNA	28420-1_{1..382}	n323978|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053818|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053818|-1.2503700|-0.3793928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323978|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053818|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053818|-1.2503700|-0.3793928	chr9	121775192	121775573	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29798_PI429285431	7.160777	P	6.8118935	P	1.27357462792582	0	lncRNA	31561-1_{1..369}	n333507|BC035462|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000093918_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000093918_03|-1.3240800|-0.1669358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333507|BC035462|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000093918_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000093918_03|-1.3240800|-0.1669358	chrX	  3735556	  3735924	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012013	0.89696825	A	0.89219415	A	1.00331463524914	0	lncRNA	ENST00000471661	NA	AK302918	NA	Hs.679801	XLOC_l2_007437	NA	ENST00000471661	THC2606894	NA	"BROAD Institute lincRNA (XLOC_l2_007437), lincRNA [TCONS_l2_00015403]"	chr2:96462621-96462680	hs|2q11.1	Agilent_HUMAN_G3V2	ENST00000471661	ENST00000471661	chr2	 96462621	 96462680	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43952_PI429285431	7.640071	P	7.7025905	P	0.957590337465771	0	lncRNA	48661-1_{1..1399}	"gi|310119031|ref|XR_109888.1| PREDICTED: Homo sapiens uncharacterized LOC100506922 (LOC100506922), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,UCSC,"	">gi|310119031|ref|XR_109888.1| PREDICTED: Homo sapiens uncharacterized LOC100506922 (LOC100506922), misc_RNA"	NA	NA	NA	NA	NA	XR_109888.1	NA	NA	NA	NA	NA	Unknown
CUST_30838_PI429285431	4.2908835	P	4.7607107	P	0.722051076851147	0	lncRNA	32626-1_{1..704}	n336795|AB209169|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000329104|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000329104|-1.0120900|-0.0476844	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336795|AB209169|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000329104|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000329104|-1.0120900|-0.0476844	chr19	 18980843	 18981546	+	NA	NA	NA	NA	GDF1	"hg19_refFlat_CERS1:range=chr19:18981386-190068815'pad=0,hg19_refFlat_CERS1:range=chr19:18981386-190068815'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_CERS1:range=chr19:18989735-190068815'pad=0,hg19_refFlat_CERS1:range=chr19:18989735-190068815'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_GDF1:range=chr19:18979406-189811165'pad=0,hg19_refFlat_GDF1:range=chr19:18979406-189811165'pad=0 3'pad=0 strand=- repeatMasking=none,-110.50chr19:18979361-18999858"	NA	inner
CUST_40957_PI429285431	0.90981275	A	2.1684008	A	0.417952805495879	0	lncRNA	41633-1_{1..437}	n410975|NR_038437|lncRNA|Homosapiens||RefGeneNoncode|NR_038437||-0.9876000|-0.4157173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410975|NR_038437|lncRNA|Homosapiens||RefGeneNoncode|NR_038437||-0.9876000|-0.4157173	chr2	208983852	208984288	+	NA	NA	NA	NA	CRYGB	NA	chr2:209007297-209010877	inner
CUST_2633_PI429285431	2.3795576	A	1.8366263	A	1.45692973440125	0	lncRNA	2620-1_{1..887}	"transcript_id ""ENST00000536296.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536296.1"" | genecode_v17"	chr6	135818489	135819375	+	ENSG00000231028.4	ENST00000536296.1	LINC00271	LINC00271-201	AHI1	NA	chr6:135808489-135818903	inter
CUST_25291_PI429285431	1.1182258	A	1.2664416	A	0.902365740451312	0	lncRNA	26822-1_{1..714}	lnc-CPS1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPS1-1:3	chr2	211333406	211334119	+	lnc-CPS1-1	lnc-CPS1-1:3	ENSG00000234281.1	AC007970.1	CPS1	NA	chr2:211342406-211343970	inner
CUST_30071_PI429285431	5.5605335	P	6.243046	P	0.623079216447368	0	lncRNA	31840-1_{1..284}	n334587|U72509|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221178|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221178|1.3378700|-0.2896034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334587|U72509|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221178|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221178|1.3378700|-0.2896034	chr12	  7014005	  7014288	+	NA	NA	NA	NA	ENO2	NA	chr12:7023614-7025795	inner
CUST_34895_PI429285431	3.0429206	P	3.5876453	P	0.685522203700067	0	lncRNA	36320-1_{1..833}	n341810|BC019844|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4289|NULL|-1.0741700|-0.1969837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341810|BC019844|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4289|NULL|-1.0741700|-0.1969837	chr9	139831620	139832452	-	NA	NA	NA	NA	FBXW5	NA	chr9:139834887-139839173	inter
CUST_45841_PI429285431	9.805256	P	10.350344	P	0.685349596978466	0	lncRNA	50173-1_{1..2233}	"gi|269315861|ref|NR_030767.1| Homo sapiens ankyrin repeat domain 13 family, member D (ANKRD13D), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|269315861|ref|NR_030767.1| Homo sapiens ankyrin repeat domain 13 family, member D (ANKRD13D), transcript variant 2, non-coding RNA"	Chr11	 67056816	 67059048	+	338692	NR_030767.1	NA	NA	NA	NA	NA	inter
CUST_25251_PI429285431	1.696212	A	1.5602342	A	1.09883730868397	0	lncRNA	26781-1_{1..646}	lnc-DNAH6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-DNAH6-1:1	chr2	 84577481	 84578126	+	lnc-DNAH6-1	lnc-DNAH6-1:1	ENSG00000228272.1	AC106874.1	NA	NA	NA	inter
CUST_46179_PI429285431	1.3451552	A	0.9263261	A	1.33684212524014	0	lncRNA	50426-1_{1..3000}	"gi|384871673|ref|NR_047595.1| Homo sapiens centromere protein J (CENPJ), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384871673|ref|NR_047595.1| Homo sapiens centromere protein J (CENPJ), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_047595.1	NA	NA	NA	NA	NA	Unknown
CUST_46275_PI429285431	5.0922623	P	5.3462577	P	0.838570858200589	0	lncRNA	50514-1_{1..3000}	"gi|397139508|ref|XR_110291.2| PREDICTED: Homo sapiens uncharacterized LOC642477 (FLJ39632), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139508|ref|XR_110291.2| PREDICTED: Homo sapiens uncharacterized LOC642477 (FLJ39632), misc_RNA"	NA	NA	NA	NA	NA	XR_110291.2	NA	NA	NA	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40"	NA	Unknown
CUST_28708_PI429285431	7.203735	P	7.2850795	P	0.945176391883509	0	lncRNA	30408-1_{1..363}	n326098|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046507|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046507|-1.1548500|-0.2882833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326098|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046507|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046507|-1.1548500|-0.2882833	chr10	  4267751	  4268113	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32022_PI429285431	0.9083468	A	1.0275986	A	0.920664995413572	0	lncRNA	33743-1_{1..420}	n338587|AF086361|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|993|NULL|-1.0432400|-0.3799208	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338587|AF086361|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|993|NULL|-1.0432400|-0.3799208	chr13	 20755669	 20756088	+	NA	NA	NA	NA	GJB2	NA	chr13:20761602-20766081	inter
CUST_34760_PI429285431	1.13598	A	0.90316737	A	1.1751236993332	0	lncRNA	36201-2_{3001..6000}	n341669|BX538226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4140|NULL|0.3271770|-0.3689391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341669|BX538226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4140|NULL|0.3271770|-0.3689391	chr9	 27940614	 27943613	-	NA	NA	NA	NA	LINGO2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr9:27948528-27954495"	NA	inter
CUST_49511_PI429285431	5.1300774	P	5.7584443	P	0.646908287385483	0	lncRNA	53302-1_{1..1401}	hg19_lincRNAsTranscripts_TCONS_l2_00024674 range=chr6:26960121-26988440 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024674 range=chr6:26960121-26988440 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 26960121	 26961521	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14420_PI429285431	14.7632475	P	14.772954	P	0.993294549432903	0	lncRNA	16081-1_{1..353}	lnc-CTBP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTBP1-1:1	chr4	  1283408	  1283760	-	lnc-CTBP1-1	lnc-CTBP1-1:1	XLOC_003849	linc-CTBP1-5	MAEA	NA	chr4:1283672-1293492	inter
CUST_9010_PI429285431	0.90869474	A	0.9069924	A	1.00118066861242	0	lncRNA	10538-2_{3001..6000}	lnc-CCDC111-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC111-1:1	chr4	185438148	185441147	+	lnc-CCDC111-1	lnc-CCDC111-1:1	ENSG00000249161	XLOC_003808	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.52;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.41;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40"	NA	inter
CUST_22330_PI429285431	0.91718686	A	1.0738497	A	0.897097788267613	0	lncRNA	23928-2_{3001..6000}	lnc-RP11-324D17.2.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-324D17.2.1-3:1	chr16	 54036349	 54039348	+	lnc-RP11-324D17.2.1-3	lnc-RP11-324D17.2.1-3:1	ENSG00000261389.1	RP11-357N13.7	FTO	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-23.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10chr16:54023349-54058240"	NA	inner
CUST_7858_PI429285431	0.9045072	A	1.356958	A	0.730800334791391	0	lncRNA	9480-2_{3001..3197}	lnc-C2orf69-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C2orf69-3:5	chr2	200344200	200344396	+	lnc-C2orf69-3	lnc-C2orf69-3:5	ENSG00000225953	AC017096.1	SATB2	NA	chr2:200331200-200335989	inter
CUST_44085_PI429285431	0.9253521	A	0.89324903	A	1.02250157825348	0	lncRNA	48753-1_{1..775}	"gi|410170451|ref|XR_171031.1| PREDICTED: Homo sapiens uncharacterized LOC101060142, transcript variant 2 (LOC101060142), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170451|ref|XR_171031.1| PREDICTED: Homo sapiens uncharacterized LOC101060142, transcript variant 2 (LOC101060142), misc_RNA"	NA	NA	NA	NA	NA	XR_171031.1	NA	NA	NA	NA	NA	Unknown
CUST_21915_PI429285431	4.326575	P	4.4549837	P	0.914839967084616	0	lncRNA	23524-1_{1..478}	lnc-APEX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-APEX1-1:1	chr14	 20919744	 20920221	+	lnc-APEX1-1	lnc-APEX1-1:1	ENSG00000258515.1	RP11-203M5.7	OSGEP	NA	chr14:20909744-20923267	inner
CUST_41221_PI429285431	1.0642807	A	0.88793975	A	1.13001423762132	0	lncRNA	42114-1_{1..78}	ENST00000578143 ncrna:miRNA chromosome:GRCh37:1:24255560:24255637:1 gene:ENSG00000264926 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578143 ncrna:miRNA chromosome:GRCh37:1:24255560:24255637:1 gene:ENSG00000264926 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 24255560	 24255637	+	ENSG00000264926	ENST00000578143	NA	NA	NA	NA	NA	inter
CUST_15767_PI429285431	0.9035621	A	1.4672834	A	0.676554799838818	0	lncRNA	17455-1_{1..1261}	lnc-TLR4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TLR4-3:1	chr9	120529376	120530636	+	lnc-TLR4-3	lnc-TLR4-3:1	XLOC_007536	linc-CEP110-14	NA	NA	NA	inter
CUST_28364_PI429285431	1.9790761	A	2.1955872	A	0.860644236022216	0	lncRNA	30014-1_{1..613}	n325676|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045401|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045401|-1.2701500|-0.4110270	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325676|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045401|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045401|-1.2701500|-0.4110270	chr13	 84034499	 84035111	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14584_PI429285431	0.9076344	A	0.8981913	A	1.00656692646633	0	lncRNA	16251-1_{1..531}	lnc-TSPAN5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSPAN5-1:1	chr4	 99627900	 99628430	-	lnc-TSPAN5-1	lnc-TSPAN5-1:1	XLOC_004022	linc-TSPAN5-1	NA	NA	NA	inter
CUST_22777_PI429285431	0.90022737	A	1.3922322	A	0.711036324810513	0	lncRNA	24357-1_{1..283}	lnc-FAM196B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM196B-1:1	chr5	169206304	169206586	-	lnc-FAM196B-1	lnc-FAM196B-1:1	ENSG00000253269.1	CTB-37A13.1	DOCK2	NA	chr5:169196304-169216369	inner
CUST_20116_PI429285431	0.94313943	A	1.4559	A	0.700880033099913	0	lncRNA	21764-1_{1..411}	lnc-STT3B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STT3B-1:1	chr3	 31748684	 31749094	+	lnc-STT3B-1	lnc-STT3B-1:1	ENSG00000232490.2	OSBPL10-AS1	OSBPL10	NA	chr3:31738684-31758912	inner
CUST_40363_PI429285431	10.120867	P	10.029342	P	1.06549586921817	0	lncRNA	41162-1_{1..2859}	n409110|NR_033243|lncRNA|Homosapiens||RefGeneNoncode|NR_033243||10.0928000|-0.2462410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409110|NR_033243|lncRNA|Homosapiens||RefGeneNoncode|NR_033243||10.0928000|-0.2462410	chr9	 34179002	 34181860	+	NA	NA	NA	NA	UBAP1	NA	chr9:34179003-34252521	inner
LNCA_21_P0010919	1.2481154	A	2.0191643	A	0.585991279386508	0	lncRNA	ENST00000427229	NA	BC043208	NA	Hs.666134	XLOC_l2_001583	NA	ENST00000427229	THC2506408	NA	"BROAD Institute lincRNA (XLOC_l2_001583), lincRNA [TCONS_l2_00003966]"	chr10:45645111-45645170	hs|10q11.21	Agilent_HUMAN_G3V2	ENST00000427229	ENST00000427229	chr10	 45645111	 45645170	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22244_PI429285431	2.359626	A	2.658391	A	0.812948011966196	0	lncRNA	23845-1_{1..226}	lnc-PARP16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PARP16-1:1	chr15	 65518810	 65519035	-	lnc-PARP16-1	lnc-PARP16-1:1	ENSG00000264287.1	RP11-628M2.1	NA	NA	NA	inter
CUST_41450_PI429285431	10.332594	P	10.053367	P	1.21354448966918	0	lncRNA	42629-1_{1..74}	ENST00000580862 ncrna:miRNA chromosome:GRCh37:5:134263729:134263802:1 gene:ENSG00000263963 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580862 ncrna:miRNA chromosome:GRCh37:5:134263729:134263802:1 gene:ENSG00000263963 gene_biotype:miRNA transcript_biotype:miRNA	chr5	134263729	134263802	+	ENSG00000263963	ENST00000580862	NA	NA	PCBD2	NA	chr5:134253729-134273802	inner
CUST_6173_PI429285431	1.3385649	A	1.9223081	A	0.66723034140075	0	lncRNA	6097-1_{1..329}	"transcript_id ""ENST00000598649.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598649.1"" | genecode_v17"	chr18	 44812096	 44812424	+	ENSG00000267761.2	ENST00000598649.1	CTD-2130O13.1	CTD-2130O13.1-003	NA	NA	NA	inter
CUST_28484_PI429285431	5.8692183	P	6.1043754	P	0.849592479068921	0	lncRNA	30151-1_{1..522}	n325826|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141967|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141967|0.4728820|-0.1111339	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325826|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141967|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141967|0.4728820|-0.1111339	chr11	 64024900	 64025421	+	NA	NA	NA	NA	PLCB3	NA	chr11:64018995-64036924	inner
LNCA_21_P0002518	3.2666435	P	3.661827	P	0.760392654220977	0	lncRNA	THC2705861	NA	NA	NA	NA	XLOC_002383	NA	NA	THC2705861	NA	"BROAD Institute lincRNA (XLOC_002383), lincRNA [TCONS_00004488]"	chr2:169198134-169198075	hs|2q24.3	Agilent_HUMAN_G3V2	THC2705861	THC2705861	chr2	169198075	169198134	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32404_PI429285431	2.4379196	A	1.2547296	A	2.27078324213073	0	lncRNA	34080-1_{1..1322}	n338997|AL137498|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1426|NULL|-1.1528000|-0.3955776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338997|AL137498|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1426|NULL|-1.1528000|-0.3955776	chr2	166247261	166248582	+	NA	NA	NA	NA	SCN2A	NA	chr2:166237261-166248820	inner
CUST_17760_PI429285431	1.7882395	A	1.0053589	A	1.72056285849686	0	lncRNA	19492-1_{1..481}	lnc-SSTR4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SSTR4-3:1	chr20	 22754170	 22754650	+	lnc-SSTR4-3	lnc-SSTR4-3:1	XLOC_013487	linc-SSTR4-2	NA	NA	NA	inter
CUST_2501_PI429285431	3.275599	P	3.1125834	P	1.11962499520136	0	lncRNA	2493-1_{1..101}	"transcript_id ""ENST00000463275.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000463275.1"" | genecode_v17"	chr6	 29945244	 29945344	+	ENSG00000204625.6	ENST00000463275.1	HCG9	HCG9-002	NA	NA	NA	inter
CUST_41311_PI429285431	14.3749695	P	14.07487	P	1.23122932601878	0	lncRNA	42331-1_{1..94}	ENST00000410550 ncrna:miRNA chromosome:GRCh37:7:99817650:99817743:-1 gene:ENSG00000222482 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410550 ncrna:miRNA chromosome:GRCh37:7:99817650:99817743:-1 gene:ENSG00000222482 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 99817650	 99817743	-	ENSG00000222482	ENST00000410550	NA	NA	GATS	NA	chr7:99807650-99827743	inter
LNCA_21_P0005722	4.8181305	P	5.407391	P	0.664683524779988	0	lncRNA	TCONS_00014761	NA	NA	NA	NA	XLOC_006844	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006844), lincRNA [TCONS_00014761]"	chr8:74794265-74794324	hs|8q21.11	Agilent_HUMAN_G3V2	TCONS_00014761	TCONS_00014761	chr8	 74794265	 74794324	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9284_PI429285431	0.89900345	A	1.2531456	A	0.782334693819448	0	lncRNA	10790-1_{1..309}	lnc-ST3GAL6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ST3GAL6-1:1	chr3	 98623737	 98624045	+	lnc-ST3GAL6-1	lnc-ST3GAL6-1:1	XLOC_002735	linc-COL8A1-4	DCBLD2	NA	chr3:98613737-98620533	inter
LNCA_21_P0008304	7.777103	P	7.9238973	P	0.903255287448689	0	lncRNA	TCONS_00022441	NA	NA	NA	NA	XLOC_010776	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010776), lincRNA [TCONS_00022441]"	chr14:27249751-27249810	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022441	TCONS_00022441	chr14	 27249751	 27249810	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20359_PI429285431	7.6854153	P	7.648612	P	1.02583827090872	0	lncRNA	22000-1_{1..793}	lnc-SRGAP3-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRGAP3-1:10	chr3	  9439108	  9439900	-	lnc-SRGAP3-1	lnc-SRGAP3-1:10	ENSG00000206573.4	RP11-58B17.1	LOC100652926	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60chr3:9435634-9438752"	NA	inter
CUST_11568_PI429285431	0.9088691	A	0.918028	A	0.993671643220292	0	lncRNA	13145-1_{1..796}	lnc-SIX3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIX3-3:1	chr2	 45402279	 45403074	+	lnc-SIX3-3	lnc-SIX3-3:1	XLOC_001453	linc-PRKCE-2	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.51;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
LNCA_21_P0014173	5.1821146	P	4.657592	P	1.43845750348328	0	lncRNA	XR_108695	XR_108695	XR_108695	NA	Hs.55481	LOC100507241	uncharacterized LOC100507241	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507241 (LOC100507241), miscRNA [XR_108695]"	chr6:28046629-28046570	hs|6p22.1	Agilent_HUMAN_G3V2	XR_108695	XR_108695	chr6	 28046570	 28046629	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25310_PI429285431	1.25955	A	1.0683835	A	1.14168646042293	0	lncRNA	26840-1_{1..557}	lnc-RP11-404L6.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-404L6.2.1-1:1	chr5	 67070826	 67071382	+	lnc-RP11-404L6.2.1-1	lnc-RP11-404L6.2.1-1:1	ENSG00000249364.1	RP11-434D9.1	NA	NA	NA	inter
CUST_26420_PI429285431	4.170498	P	4.823838	P	0.635806645135557	0	lncRNA	27927-1_{1..456}	lnc-DNASE1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DNASE1-3:1	chr16	  3659454	  3659909	+	lnc-DNASE1-3	lnc-DNASE1-3:1	ENSG00000262861.1	RP11-461A8.5	SLX4	"hg19_refFlat_SLX4:range=chr16:3632343-36589655'pad=0,hg19_refFlat_SLX4:range=chr16:3632343-36589655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60chr16:3649454-3661585"	NA	inner
CUST_26931_PI429285431	1.6167321	A	1.0624355	A	1.46845250041379	0	lncRNA	28451-1_{1..3000}	n324010|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053466|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053466|0.4142060|-0.3839511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324010|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053466|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053466|0.4142060|-0.3839511	chr9	104942625	104945624	-	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70"	NA	inter
LNCA_21_P0007112	1.1012295	A	1.51899	A	0.748585754867056	0	lncRNA	TCONS_00018995	NA	NA	NA	NA	XLOC_008899	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008899), lincRNA [TCONS_00018995]"	chr10:91583377-91583318	hs|10q23.31	Agilent_HUMAN_G3V2	TCONS_00018995	TCONS_00018995	chr10	 91583318	 91583377	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36154_PI429285431	2.8065755	A	3.2042022	P	0.75910602115882	0	lncRNA	37429-1_{1..1011}	n344716|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_265|NULL|-1.5194300|-0.2500716	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344716|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_265|NULL|-1.5194300|-0.2500716	chr1	 22350486	 22351496	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45108_PI429285431	3.1559238	P	3.5791612	P	0.745749287861111	0	lncRNA	49589-1_{1..808}	"gi|336594917|ref|NR_038926.1| Homo sapiens PRKAG2 antisense RNA 1 (PRKAG2-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336594917|ref|NR_038926.1| Homo sapiens PRKAG2 antisense RNA 1 (PRKAG2-AS1), non-coding RNA"	Chr7	151574127	151574934	+	100505483	NR_038926.1	NA	NA	NA	NA	NA	inter
CUST_10736_PI429285431	5.295778	P	5.7397466	P	0.735109667551083	0	lncRNA	12273-2_{3001..6000}	lnc-C20orf166-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf166-3:1	chr20	 61060976	 61063975	+	lnc-C20orf166-3	lnc-C20orf166-3:1	XLOC_013601	linc-C20orf166	GATA5	NA	chr20:61047976-61051026	inter
CUST_31320_PI429285431	7.026849	P	7.067882	P	0.971958755281542	0	lncRNA	33103-1_{1..1773}	n337786|BC034927|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|168|NULL|4.0159200|-0.1561027	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337786|BC034927|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|168|NULL|4.0159200|-0.1561027	chr15	 58813509	 58815281	+	NA	NA	NA	NA	LIPC	NA	chr15:58803509-58825570	inner
CUST_28650_PI429285431	5.214737	P	5.568445	P	0.782570157107477	0	lncRNA	30342-1_{1..406}	n326029|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047378|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047378|-0.9647550|-0.2212461	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326029|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047378|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047378|-0.9647550|-0.2212461	chr10	 29135881	 29136286	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22134_PI429285431	1.189737	A	0.89811265	A	1.22401764028659	0	lncRNA	23736-1_{1..2146}	lnc-DENND1A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-DENND1A-3:1	chr9	126771345	126773490	-	lnc-DENND1A-3	lnc-DENND1A-3:1	ENSG00000236668.2	RP11-85O21.2	LHX2	NA	chr9:126773889-126781675	inter
CUST_33961_PI429285431	2.2014623	A	1.6582339	A	1.45722979670447	0	lncRNA	35500-1_{1..463}	n340766|X89670|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3229|NULL|3.2670100|-0.1329907	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340766|X89670|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3229|NULL|3.2670100|-0.1329907	chr17	 56232888	 56233350	+	NA	NA	NA	NA	OR4D1	NA	chr17:56232515-56233447	inner
CUST_10534_PI429285431	3.9023478	P	3.5112154	P	1.31142236144678	0	lncRNA	12063-1_{1..595}	lnc-AC018682.6.1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC018682.6.1-1:8	chr2	 46668698	 46669292	+	lnc-AC018682.6.1-1	lnc-AC018682.6.1-1:8	XLOC_001455	linc-LOC388946	NA	NA	NA	inter
CUST_41992_PI429285431	1.5876774	A	1.9303299	A	0.788590097810534	0	lncRNA	43823-1_{1..86}	ENST00000581735 ncrna:miRNA chromosome:GRCh37:1:150524405:150524490:1 gene:ENSG00000264553 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581735 ncrna:miRNA chromosome:GRCh37:1:150524405:150524490:1 gene:ENSG00000264553 gene_biotype:miRNA transcript_biotype:miRNA	chr1	150524405	150524490	+	ENSG00000264553	ENST00000581735	NA	NA	ADAMTSL4	NA	chr1:150521898-150533413	inter
CUST_21726_PI429285431	0.8967763	A	0.9004449	A	0.997460350633365	0	lncRNA	23336-1_{1..550}	lnc-MORN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MORN2-1:1	chr2	 39089760	 39090309	+	lnc-MORN2-1	lnc-MORN2-1:1	ENSG00000225284.1	AC018693.6	DHX57	NA	chr2:39079760-39100275	inner
CUST_5386_PI429285431	6.5152946	P	6.314096	P	1.14965309727248	0	lncRNA	5320-1_{1..544}	"transcript_id ""ENST00000565401.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565401.1"" | genecode_v17"	chr16	  1046319	  1046862	-	ENSG00000260496.2	ENST00000565401.1	RP11-161M6.3	RP11-161M6.3-001	SOX8	NA	chr16:1036319-1036979	inter
CUST_200_PI429201921	0.8914067	A	1.0741357	A	0.881034854714033	0	lncRNA	161-1_{1..3000}	TC07002549.hg.1	TCONS_l2_00027205-XLOC_l2_013575 // Broad TUCP // linc-HYAL4 chr7:+:123454192-123459484 // chr7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr7:+:123454192-123459484	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00027205-XLOC_l2_013575	linc-HYAL4	chr7	123454192	123459484	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15675_PI429285431	0.9079015	A	1.3318933	A	0.745359429866477	0	lncRNA	17363-1_{1..3000}	lnc-RP4-725G10.1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP4-725G10.1.1-4:1	chr7	 56605742	 56608741	-	lnc-RP4-725G10.1.1-4	lnc-RP4-725G10.1.1-4:1	XLOC_006457	linc-LOC389493-5	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80"	NA	inter
CUST_11707_PI429285431	1.9635278	A	1.8859075	A	1.05527594513733	0	lncRNA	13285-1_{1..1217}	lnc-CLCN3-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLCN3-4:3	chr4	171203902	171205118	+	lnc-CLCN3-4	lnc-CLCN3-4:3	XLOC_003775	linc-GALNTL6-4	NA	NA	NA	inter
CUST_2452_PI429285431	0.89653325	A	1.1063917	A	0.864622059525362	0	lncRNA	2444-1_{1..535}	"transcript_id ""ENST00000520758.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520758.1"" | genecode_v17"	chr5	178930323	178930857	-	ENSG00000253652.1	ENST00000520758.1	RP11-798K23.4	RP11-798K23.4-001	NA	NA	NA	inter
CUST_46122_PI429285431	0.9129034	A	0.9071019	A	1.00402938961702	0	lncRNA	50382-1_{1..3000}	"gi|397139457|ref|XR_159033.1| PREDICTED: Homo sapiens uncharacterized LOC100652933 (IGANRP), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139457|ref|XR_159033.1| PREDICTED: Homo sapiens uncharacterized LOC100652933 (IGANRP), misc_RNA"	NA	NA	NA	NA	NA	XR_159033.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.01;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-20.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.91;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	Unknown
CUST_9587_PI429285431	7.0218625	P	7.493354	P	0.721218595494651	0	lncRNA	11103-1_{1..484}	lnc-ZNF641-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF641-1:2	chr12	 48677933	 48678416	-	lnc-ZNF641-1	lnc-ZNF641-1:2	XLOC_010064	linc-OR10AD1	NA	NA	NA	inter
LNCA_21_P0007149	2.5106266	A	3.7759762	P	0.415998548602751	0	lncRNA	ENST00000441665	NA	NA	NA	NA	XLOC_009336	NA	ENST00000441665	NA	NA	"BROAD Institute lincRNA (XLOC_009336), lincRNA [TCONS_00019158]"	chr11:131059562-131059621	hs|11q25	Agilent_HUMAN_G3V2	ENST00000441665	ENST00000441665	chr11	131059562	131059621	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18100_PI429285431	0.9047446	A	0.92168516	A	0.988326370368973	0	lncRNA	19835-1_{1..432}	lnc-SAP30-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SAP30-4:2	chr4	174440371	174440802	+	lnc-SAP30-4	lnc-SAP30-4:2	XLOC_003784	linc-KIAA1712-3	HAND2	NA	chr4:174447652-174450761	inter
CUST_41499_PI429285431	3.9318128	P	3.9862635	P	0.962961016622582	0	lncRNA	42715-1_{1..67}	ENST00000582451 ncrna:miRNA chromosome:GRCh37:3:49311553:49311619:1 gene:ENSG00000264633 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582451 ncrna:miRNA chromosome:GRCh37:3:49311553:49311619:1 gene:ENSG00000264633 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 49311553	 49311619	+	ENSG00000264633	ENST00000582451	NA	NA	USP4	NA	chr3:49314577-49321619	inter
CUST_38644_PI429285431	8.820457	P	9.075033	P	0.838233450591581	0	lncRNA	39647-1_{1..1933}	n383870|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wry.2||-1.1243800|-0.2455840	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383870|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wry.2||-1.1243800|-0.2455840	chr20	 20370272	 20372204	-	NA	NA	NA	NA	RALGAPA2	NA	chr20:20370272-20382205	inner
CUST_25870_PI429285431	2.1398802	A	1.248886	A	1.85445363748194	0	lncRNA	27391-1_{1..800}	lnc-GABRE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GABRE-1:1	chrX	151082355	151083154	-	lnc-GABRE-1	lnc-GABRE-1:1	ENSG00000229967.1	RP11-366F6.2	MAGEA4	NA	chrX:151081361-151092440	inner
CUST_50372_PI429285431	4.4944487	P	3.6825404	P	1.75553200725571	0	lncRNA	54086-1_{1..1047}	hg19_lincRNAsTranscripts_TCONS_l2_00030304 range=chrX:102094618-102155728 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030304 range=chrX:102094618-102155728 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	102094618	102095664	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013197	4.3410087	P	4.8254957	P	0.71475117913246	0	lncRNA	TCONS_l2_00025854	NA	NA	NA	NA	XLOC_l2_013383	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013383), lincRNA [TCONS_l2_00025854]"	chr7:45849556-45849615	hs|7p12.3	Agilent_HUMAN_G3V2	TCONS_l2_00025854	TCONS_l2_00025854	chr7	 45849556	 45849615	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8868_PI429285431	4.4494114	P	4.7851257	P	0.79239171442293	0	lncRNA	10407-1_{1..603}	lnc-MARCKS-5:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MARCKS-5:6	chr6	114316764	114317366	+	lnc-MARCKS-5	lnc-MARCKS-5:6	ENSG00000228624	RP3-399L15.3	NA	NA	NA	inter
CUST_22537_PI429285431	0.8876666	A	1.1220214	A	0.850065079024236	0	lncRNA	24125-1_{1..3000}	lnc-AC003682.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC003682.1-1:2	chr19	 58071024	 58074023	-	lnc-AC003682.1-1	lnc-AC003682.1-1:2	ENSG00000105132.8	ZNF550	ZNF550	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30chr19:58061024-58067725"	NA	inter
CUST_43710_PI429285431	0.8906408	A	1.3143638	A	0.745498316654657	0	lncRNA	48456-1_{1..779}	"gi|312261255|ref|NR_037583.1| Homo sapiens LEM domain containing 1 (LEMD1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|312261255|ref|NR_037583.1| Homo sapiens LEM domain containing 1 (LEMD1), transcript variant 5, non-coding RNA"	Chr1	205350506	205351284	-	93273	NR_037583.1	NA	NA	NA	NA	NA	inter
CUST_32831_PI429285431	0.90362245	A	1.3766323	A	0.720459955462018	0	lncRNA	34465-1_{1..1986}	n339482|AK123736|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1922|NULL|-1.0925600|-0.2737286	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339482|AK123736|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1922|NULL|-1.0925600|-0.2737286	chr3	124509965	124511950	-	NA	NA	NA	NA	ITGB5	NA	chr3:124499965-124521951	inner
CUST_8796_PI429285431	2.181714	A	2.5924678	A	0.752230234964407	0	lncRNA	10337-1_{1..587}	lnc-C6orf222-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C6orf222-1:2	chr6	 36164852	 36165438	-	lnc-C6orf222-1	lnc-C6orf222-1:2	ENSG00000246982	RP1-179N16.6	BRPF3	NA	chr6:36164550-36174980	inner
CUST_42176_PI429285431	6.161744	P	6.4276624	P	0.831669136924606	0	lncRNA	44230-1_{1..75}	ENST00000580000 ncrna:miRNA chromosome:GRCh37:17:80626109:80626183:-1 gene:ENSG00000266107 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580000 ncrna:miRNA chromosome:GRCh37:17:80626109:80626183:-1 gene:ENSG00000266107 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 80626109	 80626183	-	ENSG00000266107	ENST00000580000	NA	NA	RAB40B	NA	chr17:80616109-80636183	inner
CUST_50136_PI429285431	6.4046	P	6.4316616	P	0.98141715854021	0	lncRNA	53862-1_{1..2557}	hg19_lincRNAsTranscripts_TCONS_l2_00029076 range=chr9:132251018-132275972 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029076 range=chr9:132251018-132275972 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132251018	132253574	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.91;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50"	NA	inter
CUST_49484_PI429285431	1.3696547	A	0.9126575	A	1.37268176713493	0	lncRNA	53276-1_{1..667}	hg19_lincRNAsTranscripts_TCONS_l2_00024582 range=chr6:4186561-4189131 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024582 range=chr6:4186561-4189131 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	  4186561	  4187227	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12022_PI429285431	6.4237795	P	6.710355	P	0.819845804382206	0	lncRNA	13604-1_{1..374}	lnc-ZNF74-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF74-1:10	chr22	 20855028	 20855401	+	lnc-ZNF74-1	lnc-ZNF74-1:10	XLOC_014159	linc-MED15	KLHL22	NA	chr22:20845028-20850170	inter
CUST_44714_PI429285431	9.632041	P	10.070064	P	0.738145434948789	0	lncRNA	49269-1_{1..2197}	"gi|302486343|ref|NR_036523.1| Homo sapiens MHC class I polypeptide-related sequence A (MICA), transcript variant 2 (allele unknown), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302486343|ref|NR_036523.1| Homo sapiens MHC class I polypeptide-related sequence A (MICA), transcript variant 2 (allele unknown), non-coding RNA"	NA	NA	NA	NA	NA	NR_036523.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	Unknown
LNCA_21_P0002125	0.89732516	A	0.89293176	A	1.00304991437676	0	lncRNA	ENST00000456895	NA	NA	NA	NA	XLOC_002417	NA	ENST00000456895	NA	NA	"BROAD Institute lincRNA (XLOC_002417), lincRNA [TCONS_00003460]"	chr2:181940841-181940782	hs|2q31.3	Agilent_HUMAN_G3V2	ENST00000456895	ENST00000456895	chr2	181940782	181940841	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29705_PI429285431	0.8853346	A	0.88495463	A	1.00026340982047	0	lncRNA	31467-1_{1..575}	n333371|BC002789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086165_09|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086165_09|-0.9968220|-0.3326517	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333371|BC002789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086165_09|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086165_09|-0.9968220|-0.3326517	chr6	  2020702	  2021276	-	NA	NA	NA	NA	GMDS	NA	chr6:2010702-2032638	inner
CUST_45154_PI429285431	7.2235503	P	7.26689	P	0.970405949046685	0	lncRNA	49632-1_{1..3000}	"gi|299829248|ref|NR_033902.1| Homo sapiens KIAA1967 (KIAA1967), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299829248|ref|NR_033902.1| Homo sapiens KIAA1967 (KIAA1967), transcript variant 2, non-coding RNA"	Chr8	 22462145	 22465144	+	57805	NR_033902.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008796	3.956172	P	3.989341	P	0.97727128031667	0	lncRNA	TCONS_00023823	NA	NA	NA	NA	XLOC_011602	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011602), lincRNA [TCONS_00023823]"	chr15:98208596-98208537	hs|15q26.2	Agilent_HUMAN_G3V2	TCONS_00023823	TCONS_00023823	chr15	 98208537	 98208596	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20431_PI429285431	0.91212595	A	0.91507167	A	0.997960265578653	0	lncRNA	22075-1_{1..446}	lnc-TASP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TASP1-1:1	chr20	 13225889	 13226334	-	lnc-TASP1-1	lnc-TASP1-1:1	ENSG00000225956.1	RP5-1077I2.3	ISM1	NA	chr20:13215889-13236016	inner
CUST_26967_PI429285431	1.7668176	A	1.1054198	A	1.58161427783869	0	lncRNA	28490-1_{1..445}	n324051|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052985|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052985|0.3345370|-0.2088864	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324051|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052985|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052985|0.3345370|-0.2088864	chr9	 90814768	 90815212	-	NA	NA	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40"	NA	inter
CUST_22278_PI429285431	1.5441252	A	0.8991771	A	1.56368303278236	0	lncRNA	23878-1_{1..2167}	lnc-ZNF705A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF705A-1:3	chr12	  8368402	  8370568	+	lnc-ZNF705A-1	lnc-ZNF705A-1:3	ENSG00000226711.2	FAM66C	FAM90A1	"hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-24.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80chr12:8373856-8378747"	NA	inter
CUST_3360_PI429285431	1.6010058	A	2.406538	A	0.572150978914108	0	lncRNA	3335-1_{1..196}	"transcript_id ""ENST00000413066.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413066.1"" | genecode_v17"	chr9	  7930827	  7931022	-	ENSG00000226376.1	ENST00000413066.1	RP11-29B9.1	RP11-29B9.1-001	NA	NA	NA	inter
CUST_27762_PI429285431	4.3304725	P	3.977857	P	1.27687340781063	0	lncRNA	29347-1_{1..556}	n324982|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079420|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079420|0.5569630|-0.2422189	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324982|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079420|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079420|0.5569630|-0.2422189	chr20	 43859508	 43860063	+	NA	NA	NA	NA	SEMG2	NA	chr20:43850010-43853099	inter
CUST_51663_PI429285431	1.6805627	A	2.2858121	A	0.657357732252328	0	lncRNA	55232-1_{1..607}	hg19_lincRNAsTranscripts_TCONS_l2_00010931 range=chr17:65255054-65258409 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010931 range=chr17:65255054-65258409 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 65255054	 65255660	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26025_PI429285431	7.8298545	P	7.905362	P	0.949008227520303	0	lncRNA	27544-1_{1..549}	lnc-ANKRD34B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD34B-1:1	chr5	 79927021	 79927569	-	lnc-ANKRD34B-1	lnc-ANKRD34B-1:1	ENSG00000249655.1	CTC-325J23.2	DHFR	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-9.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10chr5:79922045-79937409"	NA	inner
CUST_27890_PI429285431	0.9180403	A	0.9072197	A	1.00752846584697	0	lncRNA	29484-1_{1..464}	n325127|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332234|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332234|-0.9496520|-0.3246367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325127|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332234|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332234|-0.9496520|-0.3246367	chr2	144273505	144273968	+	NA	NA	NA	NA	ARHGAP15	NA	chr2:144263505-144303638	inner
LNCA_21_P0001963	2.9333313	A	2.3544767	A	1.49366291280065	0	lncRNA	ENST00000447835	NA	NA	NA	NA	XLOC_001846	NA	ENST00000447835	THC2719699	NA	"BROAD Institute lincRNA (XLOC_001846), lincRNA [TCONS_00003098]"	chr2:216328524-216328583	hs|2q35	Agilent_HUMAN_G3V2	ENST00000447835	ENST00000447835	chr2	216328524	216328583	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45336_PI429285431	0.89271235	A	0.91364014	A	0.985598667044938	0	lncRNA	49775-1_{1..2804}	"gi|397139309|ref|XR_158846.1| PREDICTED: Homo sapiens uncharacterized LOC100130458 (LOC100130458), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139309|ref|XR_158846.1| PREDICTED: Homo sapiens uncharacterized LOC100130458 (LOC100130458), misc_RNA"	Chr9	 37036127	 37038930	+	100130458	XR_158846.2	NA	NA	NA	NA	NA	inter
CUST_18147_PI429285431	1.0235378	A	1.9311743	A	0.533057659790227	0	lncRNA	19882-1_{1..911}	lnc-TCL1B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCL1B-1:2	chr14	 96120846	 96121756	+	lnc-TCL1B-1	lnc-TCL1B-1:2	ENSG00000187621	TCL6	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70"	NA	inter
CUST_6450_PI429285431	1.2555566	A	1.1507301	A	1.07536505816493	0	lncRNA	6391-1_{1..570}	"transcript_id ""ENST00000593211.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593211.1"" | genecode_v17"	chr19	 32413790	 32414359	-	ENSG00000267094.1	ENST00000593211.1	CTC-360P9.5	CTC-360P9.5-001	NA	NA	NA	inter
CUST_10824_PI429285431	4.0879893	P	4.1885743	P	0.932654731657838	0	lncRNA	12359-1_{1..299}	lnc-EMP3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EMP3-1:3	chr19	 48826047	 48826345	+	lnc-EMP3-1	lnc-EMP3-1:3	XLOC_013108	linc-EMP3-1	TMEM143	NA	chr19:48835616-48836128	inter
LNCA_21_P0003674	5.751333	P	6.240895	P	0.712241300343049	0	lncRNA	TCONS_00008317	NA	NA	NA	NA	XLOC_003772	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003772), lincRNA [TCONS_00008317]"	chr4:170861704-170861763	hs|4q33	Agilent_HUMAN_G3V2	TCONS_00008317	TCONS_00008317	chr4	170861704	170861763	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30369_PI429285431	2.2399151	A	2.5084352	A	0.830170688749427	0	lncRNA	32145-1_{1..532}	n335467|AY789476|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257805|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257805|-1.0877800|-0.1757842	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335467|AY789476|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257805|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257805|-1.0877800|-0.1757842	chr13	 20797548	 20798079	-	NA	NA	NA	NA	GJB6	NA	chr13:20796101-20806534	inner
CUST_19458_PI429285431	1.5119481	A	1.756556	A	0.844045162094026	0	lncRNA	21117-1_{1..483}	lnc-RPL17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RPL17-1:1	chr18	 47012324	 47012806	-	lnc-RPL17-1	lnc-RPL17-1:1	ENSG00000263916.1	RP11-110H1.4	RPL17-C18ORF32	NA	chr18:47007548-47018935	inner
CUST_14103_PI429285431	0.89968336	A	1.8499113	A	0.517550684539043	0	lncRNA	15750-1_{1..587}	lnc-CD83-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD83-5:1	chr6	 14665277	 14665863	+	lnc-CD83-5	lnc-CD83-5:1	XLOC_005183	linc-JARID2-1	NA	NA	NA	inter
CUST_39291_PI429285431	2.8791428	A	3.2084942	P	0.795894217685623	0	lncRNA	40261-1_{1..3000}	n386284|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gko.2||1.9943300|-0.1188933	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386284|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gko.2||1.9943300|-0.1188933	chr20	 62667489	 62670488	+	NA	NA	NA	NA	PRPF6	NA	chr20:62657489-62664453	inter
CUST_46011_PI429285431	0.9100113	A	0.91828185	A	0.994283692203748	0	lncRNA	50295-1_{1..2383}	"gi|310122867|ref|XR_109095.1| PREDICTED: Homo sapiens uncharacterized LOC100506606 (LOC100506606), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310122867|ref|XR_109095.1| PREDICTED: Homo sapiens uncharacterized LOC100506606 (LOC100506606), misc_RNA"	NA	NA	NA	NA	NA	XR_109095.1	NA	NA	NA	"hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_FAR2:range=chr12:29423383-294867275'pad=0,hg19_refFlat_FAR2:range=chr12:29423383-294867275'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FAR2:range=chr12:29446335-294867275'pad=0,hg19_refFlat_FAR2:range=chr12:29446335-294867275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-65.00"	NA	Unknown
CUST_43672_PI429285431	6.207258	P	6.5175185	P	0.806496121230449	0	lncRNA	48427-1_{1..2456}	"gi|251823848|ref|NR_027982.1| Homo sapiens RASAL2 antisense RNA 1 (RASAL2-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|251823848|ref|NR_027982.1| Homo sapiens RASAL2 antisense RNA 1 (RASAL2-AS1), non-coding RNA"	Chr1	178060643	178063098	-	100302401	NR_027982.1	NA	NA	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90"	NA	inter
CUST_37840_PI429285431	3.971849	P	4.639089	P	0.629710225611698	0	lncRNA	38931-1_{1..806}	n346365|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1915|NULL|-1.3223300|-0.2191896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346365|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1915|NULL|-1.3223300|-0.2191896	chr21	 33940155	 33940960	-	NA	NA	NA	NA	TCP10L	NA	chr21:33947151-33952243	inter
CUST_39223_PI429285431	0.9187684	A	1.4031448	A	0.714805975543603	0	lncRNA	40196-1_{1..2268}	n386040|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zho.2||2.7623900|-0.3229288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386040|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zho.2||2.7623900|-0.3229288	chr12	 10741077	 10743344	-	NA	NA	NA	NA	MAGOHB	NA	chr12:10756364-10762434	inter
CUST_15279_PI429285431	4.3105865	P	3.6523857	P	1.57811331447064	0	lncRNA	16954-1_{1..501}	lnc-RP11-497E19.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-497E19.2.1-1:1	chr14	 85886028	 85886528	+	lnc-RP11-497E19.2.1-1	lnc-RP11-497E19.2.1-1:1	XLOC_010889	linc-FLRT2-2	NA	NA	NA	inter
LNCA_21_P0003670	0.91274273	A	1.582527	A	0.62860067655297	0	lncRNA	XR_109853	XR_109853	XR_109853	NA	NA	LOC100505784	uncharacterized LOC100505784	NA	THC2704608	NA	"PREDICTED: Homo sapiens hypothetical LOC100505784 (LOC100505784), miscRNA [XR_109853]"	chr4:157564878-157564937	hs|4q32.1	Agilent_HUMAN_G3V2	XR_109853	XR_109853	chr4	157564878	157564937	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13690_PI429285431	3.4750566	P	4.53604	P	0.479305234217351	0	lncRNA	15330-1_{1..916}	lnc-GALNTL5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GALNTL5-1:2	chr7	151575945	151576860	+	lnc-GALNTL5-1	lnc-GALNTL5-1:2	XLOC_006296	linc-GALNTL5-1	PRKAG2	NA	chr7:151565945-151574316	inter
CUST_30799_PI429285431	7.8171997	P	8.073366	P	0.837309964910845	0	lncRNA	32586-1_{1..329}	n336693|Z70648|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327932|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327932|1.1981800|-0.0975394	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336693|Z70648|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327932|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327932|1.1981800|-0.0975394	chr14	106805176	106805504	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34761_PI429285431	1.8772748	A	0.9121386	A	1.95224781802155	0	lncRNA	36201-3_{6001..6904}	n341669|BX538226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4140|NULL|0.3271770|-0.3689391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341669|BX538226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4140|NULL|0.3271770|-0.3689391	chr9	 27943614	 27944517	-	NA	NA	NA	NA	LINGO2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr9:27948528-27954495"	NA	inter
CUST_18519_PI429285431	11.2846775	P	10.3025055	P	1.97543722307569	0	lncRNA	20233-1_{1..566}	lnc-DDX27-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DDX27-1:6	chr20	 47905582	 47906147	+	lnc-DDX27-1	lnc-DDX27-1:6	ENSG00000177410	ZNFX1-AS1	NA	NA	NA	inter
CUST_40184_PI429285431	7.008913	P	7.166958	P	0.896238743992284	0	lncRNA	41018-1_{1..1832}	n407965|NR_027680|lncRNA|Homosapiens||RefGeneNoncode|NR_027680||3.9492400|-0.1849324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407965|NR_027680|lncRNA|Homosapiens||RefGeneNoncode|NR_027680||3.9492400|-0.1849324	chr17	  5322960	  5324791	+	NA	NA	NA	NA	RPAIN	NA	chr17:5322961-5336340	inner
CUST_7464_PI429285431	1.7515962	A	0.9208868	A	1.77855969825433	0	lncRNA	9107-1_{1..2744}	lnc-C20orf96-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C20orf96-4:1	chr20	   324575	   327318	-	lnc-C20orf96-4	lnc-C20orf96-4:1	ENSG00000248992	ENST00000510727	NRSN2	"hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-19.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20chr20:327370-335512"	NA	inter
CUST_432_PI429285431	0.89361143	A	1.1284456	A	0.849782671451757	0	lncRNA	424-1_{1..480}	"transcript_id ""ENST00000426504.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426504.1"" | genecode_v17"	chr1	147249700	147250179	+	ENSG00000234190.1	ENST00000426504.1	RP11-433J22.3	RP11-433J22.3-001	GJA5	NA	chr1:147239700-147245484	inter
CUST_24335_PI429285431	0.9220395	A	1.02174	A	0.933226707035188	0	lncRNA	25888-1_{1..489}	lnc-AC079135.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC079135.1.1-1:1	chr2	237300938	237301426	+	lnc-AC079135.1.1-1	lnc-AC079135.1.1-1:1	ENSG00000232893.1	AC019068.2	IQCA1	"hg19_refFlat_IQCA1:range=chr2:237233331-2374159105'pad=0,hg19_refFlat_IQCA1:range=chr2:237233331-2374159105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_IQCA1:range=chr2:237233331-2374123055'pad=0,hg19_refFlat_IQCA1:range=chr2:237233331-2374123055'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40chr2:237290938-237311031"	NA	inter
CUST_48331_PI429285431	4.502488	P	4.106268	P	1.31605519811707	0	lncRNA	52188-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00001211 range=chr1:47333329-47349818 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001211 range=chr1:47333329-47349818 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 47333329	 47336328	-	NA	NA	NA	NA	CYP4A11	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.14;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.60;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr1:47357206-47359818"	NA	inter
CUST_39520_PI429285431	1.3258389	A	0.89937025	A	1.34393992487028	0	lncRNA	40466-1_{1..875}	n387337|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011cnq.1||1.2301700|-0.3261017	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387337|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011cnq.1||1.2301700|-0.3261017	chr5	 22142460	 22143334	+	NA	NA	NA	NA	CDH12	NA	chr5:22132460-22162370	inner
CUST_4264_PI429285431	5.07695	P	5.3631315	P	0.82006973483879	0	lncRNA	4221-1_{1..481}	"transcript_id ""ENST00000550908.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550908.1"" | genecode_v17"	chr12	 53553370	 53553850	+	ENSG00000257808.1	ENST00000550908.1	RP11-1136G11.8	RP11-1136G11.8-001	CSAD	"hg19_refFlat_CSAD:range=chr12:53552295-535581685'pad=0,hg19_refFlat_CSAD:range=chr12:53552295-535581685'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_CSAD:range=chr12:53552295-535672545'pad=0,hg19_refFlat_CSAD:range=chr12:53552295-535672545'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_CSAD:range=chr12:53552295-535735925'pad=0,hg19_refFlat_CSAD:range=chr12:53552295-535735925'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80chr12:53543370-53564784"	NA	inner
CUST_27946_PI429285431	0.9007145	A	0.90136135	A	0.99955173824559	0	lncRNA	29550-1_{1..491}	n325193|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330089|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330089|-1.3214700|-0.3747043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325193|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330089|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330089|-1.3214700|-0.3747043	chr2	107249040	107249530	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32815_PI429285431	0.89864093	A	0.9111922	A	0.991337857012972	0	lncRNA	34450-1_{1..573}	n339462|AJ457064|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1900|NULL|0.7311860|-0.1059618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339462|AJ457064|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1900|NULL|0.7311860|-0.1059618	chr21	 32185014	 32185586	-	NA	NA	NA	NA	KRTAP8-1	NA	chr21:32179308-32185570	inner
LNCA_21_P0010990	0.9094404	A	0.9234105	A	0.990363397101464	0	lncRNA	TCONS_l2_00004705	NA	NA	NA	NA	XLOC_l2_002433	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002433), lincRNA [TCONS_l2_00004705]"	chr11:88158173-88158232	hs|11q14.2	Agilent_HUMAN_G3V2	TCONS_l2_00004705	TCONS_l2_00004705	chr11	 88158173	 88158232	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20748_PI429285431	2.0802784	A	1.3994924	A	1.60301286065973	0	lncRNA	22382-1_{1..574}	lnc-POU5F1B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POU5F1B-3:1	chr8	127725531	127726104	+	lnc-POU5F1B-3	lnc-POU5F1B-3:1	ENSG00000254286.1	RP11-89K10.1	NA	NA	NA	inter
CUST_49520_PI429285431	0.89041317	A	0.8996346	A	0.993628575947181	0	lncRNA	53312-1_{1..280}	hg19_lincRNAsTranscripts_TCONS_l2_00024696 range=chr6:29676310-29688839 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024696 range=chr6:29676310-29688839 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 29676310	 29676589	-	NA	NA	NA	NA	HLA-F	NA	chr6:29691117-29695073	inter
CUST_28127_PI429285431	0.9002407	A	0.89467806	A	1.00386317111541	0	lncRNA	29751-1_{1..596}	n325402|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323730|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323730|-0.9977350|-0.1775316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325402|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323730|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323730|-0.9977350|-0.1775316	chr2	 16772871	 16773466	+	NA	NA	NA	NA	FAM49A	NA	chr2:16762871-16805287	inner
LNCA_21_P0007357	4.163497	P	4.083177	P	1.05725252066897	0	lncRNA	TCONS_00019646	NA	NA	NA	NA	XLOC_009452	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009452), lincRNA [TCONS_00019646]"	chr11:61891205-61891146	hs|11q12.3	Agilent_HUMAN_G3V2	TCONS_00019646	TCONS_00019646	chr11	 61891146	 61891205	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46473_PI429285431	5.804826	P	4.3005786	P	2.8367664914534	0	lncRNA	50672-1_{1..3000}	"gi|225579026|ref|NR_027390.1| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide M (POLR2M), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225579026|ref|NR_027390.1| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide M (POLR2M), transcript variant 3, non-coding RNA"	Chr15	 57998901	 58001900	+	81488	NR_027390.1	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00"	NA	inter
CUST_51450_PI429285431	2.2575126	A	1.6881421	A	1.48387596062752	0	lncRNA	55027-1_{1..1239}	hg19_lincRNAsTranscripts_TCONS_l2_00010106 range=chr16:32163127-32165476 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010106 range=chr16:32163127-32165476 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 32163127	 32164365	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47761_PI429285431	4.071528	P	3.9613543	P	1.07935818304545	0	lncRNA	51699-1_{1..3000}	"gi|385137100|ref|NR_047638.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 68, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137100|ref|NR_047638.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 68, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047638.1	NA	NA	NA	NA	NA	inter
CUST_15379_PI429285431	1.414887	A	1.331423	A	1.05955905558218	0	lncRNA	17062-1_{1..1020}	lnc-MDM1-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MDM1-1:13	chr12	 68742281	 68743300	-	lnc-MDM1-1	lnc-MDM1-1:13	XLOC_010116	linc-MDM1-2	NA	NA	NA	inter
LNCA_21_P0005166	0.9158928	A	0.9247628	A	0.993870646110437	0	lncRNA	TCONS_00012732	NA	NA	NA	NA	XLOC_005737	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005737), lincRNA [TCONS_00012732]"	chr6:45523698-45523639	hs|6p21.1	Agilent_HUMAN_G3V2	TCONS_00012732	TCONS_00012732	chr6	 45523639	 45523698	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007080	0.9160317	A	0.9245137	A	0.994137974727496	0	lncRNA	TCONS_00018828	NA	NA	NA	NA	XLOC_008636	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008636), lincRNA [TCONS_00018828]"	chr10:120001249-120004910	hs|10q26.11	Agilent_HUMAN_G3V2	TCONS_00018828	TCONS_00018828	chr10	120001249	120004910	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41242_PI429285431	7.7057877	P	8.045718	P	0.79007948154448	0	lncRNA	42167-1_{1..95}	ENST00000579613 ncrna:miRNA chromosome:GRCh37:22:23077063:23077157:1 gene:ENSG00000264629 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579613 ncrna:miRNA chromosome:GRCh37:22:23077063:23077157:1 gene:ENSG00000264629 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 23077063	 23077157	+	ENSG00000264629	ENST00000579613	NA	NA	NA	NA	NA	inter
CUST_51989_PI429285431	0.9470276	A	1.0924788	A	0.904096578937057	0	lncRNA	55525-1_{1..1467}	hg19_lincRNAsTranscripts_TCONS_l2_00017186 range=chr21:29750553-30144463 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017186 range=chr21:29750553-30144463 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 29750553	 29752019	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42124_PI429285431	0.91580486	A	0.9572259	A	0.971697363825089	0	lncRNA	44114-1_{1..115}	ENST00000581569 ncrna:miRNA chromosome:GRCh37:17:67095683:67095797:1 gene:ENSG00000265331 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581569 ncrna:miRNA chromosome:GRCh37:17:67095683:67095797:1 gene:ENSG00000265331 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 67095683	 67095797	+	ENSG00000265331	ENST00000581569	NA	NA	ABCA6	NA	chr17:67085683-67105797	inner
CUST_22995_PI429285431	4.857886	P	5.476651	P	0.651228164432487	0	lncRNA	24569-1_{1..365}	lnc-USP35-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP35-2:1	chr11	 78103182	 78103546	+	lnc-USP35-2	lnc-USP35-2:1	ENSG00000254649.1	RP11-452H21.2	GAB2	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00chr11:78093182-78113451"	NA	inner
CUST_26784_PI429285431	7.391156	P	7.0898824	P	1.23223173796087	0	lncRNA	28289-1_{1..483}	n323842|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057244|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057244|-1.2387700|-0.2388473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323842|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057244|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057244|-1.2387700|-0.2388473	chrX	 73080905	 73081387	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33925_PI429285431	0.9063663	A	0.9067044	A	0.999765674396786	0	lncRNA	35466-1_{1..1588}	n340722|AF070543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3185|NULL|-1.1998300|-0.2806866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340722|AF070543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3185|NULL|-1.1998300|-0.2806866	chr5	167555860	167557447	+	NA	NA	NA	NA	ODZ2	NA	chr5:167545860-167567427	inner
CUST_31000_PI429285431	1.193228	A	0.90660924	A	1.2197781346825	0	lncRNA	32788-1_{1..649}	n337163|AF399618|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000384023|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000384023|4.8572100|-0.1865821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337163|AF399618|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000384023|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000384023|4.8572100|-0.1865821	chr11	  6806470	  6807118	+	NA	NA	NA	NA	OR6A2	NA	chr11:6815756-6817119	inner
CUST_13665_PI429285431	0.9016224	A	0.90830994	A	0.995375277618733	0	lncRNA	15303-1_{1..617}	lnc-PRKACB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRKACB-2:1	chr1	 84039503	 84040119	+	lnc-PRKACB-2	lnc-PRKACB-2:1	XLOC_000271	linc-PRKACB-2	NA	NA	NA	inter
CUST_3353_PI429285431	1.6131223	A	1.8122278	A	0.871090489554867	0	lncRNA	3328-1_{1..413}	"transcript_id ""ENST00000416242.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416242.1"" | genecode_v17"	chr9	   112716	   113128	-	ENSG00000231808.1	ENST00000416242.1	RP11-143M1.4	RP11-143M1.4-001	CBWD1	NA	chr9:121038-123754	inter
CUST_14429_PI429285431	1.5410187	A	1.3746933	A	1.12219656352673	0	lncRNA	16090-1_{1..866}	lnc-GPR65-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR65-1:14	chr14	 88550381	 88551246	+	lnc-GPR65-1	lnc-GPR65-1:14	XLOC_010897	linc-SPATA7-3	NA	NA	NA	inter
CUST_29538_PI429285431	3.5188007	P	2.689852	A	1.77639042487101	0	lncRNA	31297-1_{1..290}	n333005|AF147353|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071426|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071426|-1.2266800|-0.3302263	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333005|AF147353|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071426|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071426|-1.2266800|-0.3302263	chr20	  3019457	  3019746	+	NA	NA	NA	NA	PTPRA	NA	chr20:3009457-3019315	inter
CUST_19211_PI429285431	6.327202	P	6.644275	P	0.80269677143706	0	lncRNA	20881-1_{1..512}	lnc-MARCH4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MARCH4-2:1	chr2	217363330	217363841	-	lnc-MARCH4-2	lnc-MARCH4-2:1	ENSG00000232485.2	AC098820.3	RPL37A	NA	chr2:217363520-217366190	inter
CUST_41687_PI429285431	1.7572235	A	1.6878887	A	1.04923279024099	0	lncRNA	43155-1_{1..88}	ENST00000390227 ncrna:miRNA chromosome:GRCh37:14:101492357:101492444:1 gene:ENSG00000211582 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390227 ncrna:miRNA chromosome:GRCh37:14:101492357:101492444:1 gene:ENSG00000211582 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101492357	101492444	+	ENSG00000211582	ENST00000390227	NA	NA	NA	NA	NA	inter
CUST_16402_PI429285431	0.8969528	A	0.8974564	A	0.999650991997337	0	lncRNA	18098-1_{1..564}	lnc-C20orf197-3:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf197-3:13	chr20	 58899470	 58900033	+	lnc-C20orf197-3	lnc-C20orf197-3:13	XLOC_013591	linc-CDH4-4	NA	NA	NA	inter
LNCA_21_P0011861	0.9083777	A	0.9082052	A	1.00011957503717	0	lncRNA	TCONS_l2_00014017	NA	NA	NA	NA	XLOC_l2_007586	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007586), lincRNA [TCONS_l2_00014017]"	chr2:145698442-145698501	hs|2q22.3	Agilent_HUMAN_G3V2	TCONS_l2_00014017	TCONS_l2_00014017	chr2	145698442	145698501	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1366_PI429285431	7.1982427	P	7.2950835	P	0.935078377051435	0	lncRNA	1354-1_{1..341}	"transcript_id ""ENST00000485770.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000485770.1"" | genecode_v17"	chr3	 64430158	 64430498	-	ENSG00000243993.1	ENST00000485770.1	RP11-14D22.2	RP11-14D22.2-001	NA	NA	NA	inter
CUST_40035_PI429285431	4.9234133	P	4.5104265	P	1.3314394311186	0	lncRNA	40891-2_{3001..4063}	n407227|NR_026695|lncRNA|Homosapiens||RefGeneNoncode|NR_026695||1.7095800|-0.3106826	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407227|NR_026695|lncRNA|Homosapiens||RefGeneNoncode|NR_026695||1.7095800|-0.3106826	chr5	141974742	141975804	-	NA	NA	NA	NA	FGF1	NA	chr5:141971743-142077635	inner
CUST_3312_PI429285431	1.0918365	A	0.9416543	A	1.10970961001688	0	lncRNA	3291-1_{1..467}	"transcript_id ""ENST00000521014.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521014.1"" | genecode_v17"	chr8	130902711	130903177	+	ENSG00000254263.1	ENST00000521014.1	RP11-473O4.4	RP11-473O4.4-001	FAM49B	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40chr8:130892711-130924004"	NA	inter
CUST_9714_PI429285431	3.5310795	P	3.9104686	P	0.768763049535331	0	lncRNA	11230-1_{1..251}	lnc-TMEM56-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM56-1:1	chr1	 95550470	 95550720	+	lnc-TMEM56-1	lnc-TMEM56-1:1	XLOC_000306	linc-TMEM56-1	NA	NA	NA	inter
CUST_16677_PI429285431	4.6661396	P	4.824157	P	0.896255889976188	0	lncRNA	18382-1_{1..376}	lnc-FAM22B-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM22B-1:7	chr10	 81436224	 81436599	+	lnc-FAM22B-1	lnc-FAM22B-1:7	XLOC_008528	linc-C10orf57-5	NA	NA	NA	inter
CUST_35581_PI429285431	9.11033	P	9.565619	P	0.729364051617382	0	lncRNA	36996-1_{1..1440}	n342716|BC033555|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5218|NULL|2.2778700|-0.0979599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n342716|BC033555|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5218|NULL|2.2778700|-0.0979599	chr17	 55122838	 55124277	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45440_PI429285431	8.955262	P	9.435224	P	0.716996509155333	0	lncRNA	49858-1_{1..2011}	"gi|393195307|ref|NR_072983.1| Homo sapiens dolichyl pyrophosphate phosphatase 1 (DOLPP1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393195307|ref|NR_072983.1| Homo sapiens dolichyl pyrophosphate phosphatase 1 (DOLPP1), transcript variant 3, non-coding RNA"	Chr9	131843383	131845393	+	57171	NR_072983.1	NA	NA	NA	NA	NA	inter
CUST_14768_PI429285431	3.040454	A	3.5423706	P	0.70616802350889	0	lncRNA	16429-1_{1..406}	lnc-ASB1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASB1-1:2	chr2	239467777	239468182	+	lnc-ASB1-1	lnc-ASB1-1:2	XLOC_001916	linc-TWIST2-2	NA	NA	NA	inter
CUST_30731_PI429285431	1.215874	A	0.9115018	A	1.23488115202467	0	lncRNA	32514-1_{1..220}	n336284|Y13807|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325797|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325797|-1.3675500|-0.2938811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336284|Y13807|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325797|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325797|-1.3675500|-0.2938811	chr16	 82761079	 82761298	+	NA	NA	NA	NA	CDH13	NA	chr16:82751079-82771299	inner
CUST_38024_PI429285431	0.90505797	A	0.9092634	A	0.997089262487183	0	lncRNA	39109-1_{1..343}	n377598|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029967||-1.4669800|-0.4445094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377598|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029967||-1.4669800|-0.4445094	chr6	  1019458	  1019800	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29552_PI429285431	8.073014	P	8.318106	P	0.843761988100013	0	lncRNA	31312-1_{1..361}	n333032|AF174603|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072612|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072612|1.3794400|-0.0657636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333032|AF174603|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072612|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072612|1.3794400|-0.0657636	chr5	176074581	176074941	+	NA	NA	NA	NA	EIF4E1B	NA	chr5:176064581-176073642	inner
CUST_35084_PI429285431	10.284028	P	10.539369	P	0.837789088763119	0	lncRNA	36493-1_{1..1767}	n342047|AK001309|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4528|NULL|-0.7156170|-0.1287892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342047|AK001309|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4528|NULL|-0.7156170|-0.1287892	chr12	120532902	120534668	-	NA	NA	NA	NA	CCDC64	NA	chr12:120522902-120532299	inner
CUST_2547_PI429285431	0.8841511	A	0.8848343	A	0.999526553957206	0	lncRNA	2535-1_{1..492}	"transcript_id ""ENST00000449928.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449928.1"" | genecode_v17"	chr6	 68765243	 68765734	+	ENSG00000223504.1	ENST00000449928.1	RP11-542F9.1	RP11-542F9.1-001	NA	NA	NA	inter
CUST_10168_PI429285431	1.040805	A	2.2028255	A	0.44688623109569	0	lncRNA	11693-1_{1..1493}	lnc-AJAP1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AJAP1-4:3	chr1	  4484054	  4485546	+	lnc-AJAP1-4	lnc-AJAP1-4:3	XLOC_000033	linc-AJAP1-3	NA	NA	NA	inter
CUST_40849_PI429285431	0.9044704	A	0.9070511	A	0.998212794029116	0	lncRNA	41552-1_{1..2728}	n410621|NR_037861_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037861_6||-0.3341760|-0.2655763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410621|NR_037861_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037861_6||-0.3341760|-0.2655763	chr6	  3469500	  3472227	+	NA	NA	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50"	NA	inter
CUST_51969_PI429285431	0.8902559	A	0.8874146	A	1.00197137970305	0	lncRNA	55511-1_{1..391}	hg19_lincRNAsTranscripts_TCONS_l2_00016252 range=chr20:38632912-38635073 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016252 range=chr20:38632912-38635073 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 38632912	 38633302	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.30"	NA	inter
CUST_32804_PI429285431	3.1289175	P	3.7594914	P	0.645919419290935	0	lncRNA	34439-1_{1..1548}	n339450|AF054991|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1888|NULL|-1.1571600|-0.3087680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339450|AF054991|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1888|NULL|-1.1571600|-0.3087680	chr21	 27364558	 27366105	+	NA	NA	NA	NA	APP	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr21:27354558-27376108"	NA	inner
CUST_41146_PI429285431	0.9008657	A	0.90437865	A	0.997567970798794	0	lncRNA	41945-1_{1..81}	ENST00000579498 ncrna:miRNA chromosome:GRCh37:8:125834220:125834300:-1 gene:ENSG00000263735 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579498 ncrna:miRNA chromosome:GRCh37:8:125834220:125834300:-1 gene:ENSG00000263735 gene_biotype:miRNA transcript_biotype:miRNA	chr8	125834220	125834300	-	ENSG00000263735	ENST00000579498	NA	NA	NA	NA	NA	inter
CUST_22566_PI429285431	1.336076	A	1.3097681	A	1.01840252405701	0	lncRNA	24153-1_{1..270}	lnc-ANKRD13B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD13B-2:1	chr17	 27967679	 27967948	+	lnc-ANKRD13B-2	lnc-ANKRD13B-2:1	ENSG00000263370.1	RP11-68I3.5	SSH2	NA	chr17:27957679-27977843	inner
CUST_16233_PI429285431	8.638868	P	8.752708	P	0.924125055512125	0	lncRNA	17940-1_{1..1423}	lnc-RAB44-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB44-1:1	chr6	 36688928	 36690350	+	lnc-RAB44-1	lnc-RAB44-1:1	XLOC_005275	linc-C6orf89	LOC100652802	NA	chr6:36678928-36683434	inner
CUST_17178_PI429285431	8.841607	P	8.758857	P	1.05903480203566	0	lncRNA	18889-1_{1..1497}	lnc-LGALS12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LGALS12-1:1	chr11	 63292153	 63293649	+	lnc-LGALS12-1	lnc-LGALS12-1:1	XLOC_009153	linc-RARRES3	LGALS12	"hg19_refFlat_TMSB4Y:range=chrY:15816216-158171395'pad=0,hg19_refFlat_TMSB4Y:range=chrY:15816216-158171395'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.80;hg19_refFlat_TMSB4X:range=chrX:12994381-129949305'pad=0,hg19_refFlat_TMSB4X:range=chrX:12994381-129949305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40chr11:63282153-63284246"	NA	inter
CUST_51880_PI429285431	0.900654	A	0.9099634	A	0.993567990141827	0	lncRNA	55431-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00012689 range=chr19:53703887-53719504 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012689 range=chr19:53703887-53719504 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 53703887	 53706886	+	NA	NA	NA	NA	ZNF665	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50chr19:53693887-53696619"	NA	inter
CUST_12722_PI429285431	0.885708	A	0.88395065	A	1.00121884438556	0	lncRNA	14342-1_{1..3000}	lnc-AL078633.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AL078633.1-1:1	chr20	 60810528	 60813527	+	lnc-AL078633.1-1	lnc-AL078633.1-1:1	XLOC_013597	linc-OSBPL2	OSBPL2	NA	chr20:60813580-60821355	inter
CUST_3675_PI429285431	0.9115513	A	0.91591704	A	0.996978473654688	0	lncRNA	3643-1_{1..2126}	"transcript_id ""ENST00000451929.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451929.1"" | genecode_v17"	chr10	 44434451	 44436576	+	ENSG00000233395.1	ENST00000451929.1	LINC00841	LINC00841-001	NA	NA	NA	inter
CUST_5273_PI429285431	10.091604	P	9.737451	P	1.27823491476907	0	lncRNA	5213-1_{1..526}	"transcript_id ""ENST00000559299.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559299.1"" | genecode_v17"	chr15	 82245644	 82246169	-	ENSG00000259445.1	ENST00000559299.1	RP11-276M12.1	RP11-276M12.1-001	NA	NA	NA	inter
CUST_10096_PI429285431	1.1271863	A	1.4333236	A	0.808804371508393	0	lncRNA	11622-1_{1..3000}	lnc-TPM4-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TPM4-2:3	chr19	 16135931	 16138930	+	lnc-TPM4-2	lnc-TPM4-2:3	XLOC_012983	linc-TPM4-2	NA	"hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10"	NA	inter
CUST_17323_PI429285431	0.89013374	A	0.88585246	A	1.00297196471775	0	lncRNA	19041-1_{1..854}	lnc-TAOK3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TAOK3-2:2	chr12	119083695	119084548	-	lnc-TAOK3-2	lnc-TAOK3-2:2	XLOC_010213	linc-TAOK3-5	NA	NA	NA	inter
CUST_9135_PI429285431	1.7297888	A	1.4277514	A	1.23288428597751	0	lncRNA	10654-1_{1..2659}	lnc-XAGE3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XAGE3-1:1	chrX	 52936569	 52939227	-	lnc-XAGE3-1	lnc-XAGE3-1:1	ENSG00000249461	ENST00000512330	FAM156B	"hg19_refFlat_FAM156A:range=chrX:52977155-529777965'pad=0,hg19_refFlat_FAM156A:range=chrX:52977155-529777965'pad=0 3'pad=0 strand=- repeatMasking=none,-104.30;hg19_refFlat_FAM156B:range=chrX:52936253-529368945'pad=0,hg19_refFlat_FAM156B:range=chrX:52936253-529368945'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.30;hg19_refFlat_FAM156A:range=chrX:52936253-529368945'pad=0,hg19_refFlat_FAM156A:range=chrX:52936253-529368945'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.30;hg19_refFlat_FAM156B:range=chrX:52977155-529777965'pad=0,hg19_refFlat_FAM156B:range=chrX:52977155-529777965'pad=0 3'pad=0 strand=- repeatMasking=none,-104.30chrX:52928409-52937587"	NA	inner
CUST_33228_PI429285431	3.8548179	P	4.4436646	P	0.664874199512675	0	lncRNA	34817-1_{1..3000}	n339927|D86975|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2376|NULL|7.1807700|-0.1371148	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339927|D86975|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2376|NULL|7.1807700|-0.1371148	chr18	 74072229	 74075228	-	NA	NA	NA	NA	ZNF516	NA	chr18:74069637-74207146	inner
CUST_50820_PI429285431	0.889222	A	0.91416955	A	0.982856330197464	0	lncRNA	54471-1_{1..249}	hg19_lincRNAsTranscripts_TCONS_l2_00005025 range=chr11:59927128-59927785 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005025 range=chr11:59927128-59927785 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	 59927128	 59927376	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18974_PI429285431	5.9857645	P	6.4336348	P	0.73312428437714	0	lncRNA	20666-1_{1..177}	lnc-JARID2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JARID2-1:1	chr6	 14871911	 14872087	+	lnc-JARID2-1	lnc-JARID2-1:1	ENSG00000231077	RP11-146I2.2	NA	NA	NA	inter
LNCA_19_P00322017	4.9703636	P	5.567086	P	0.661254527377798	0	lncRNA	ENST00000450205	NA	NA	NA	NA	XLOC_014101	NA	ENST00000450205	THC2743924	NA	"BROAD Institute lincRNA (XLOC_014101), lincRNA [TCONS_00028945]"	chr21:44746118-44746059	hs|21q22.3	Agilent_HUMAN_G3V2	ENST00000450205	ENST00000450205	chr21	 44746059	 44746118	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43834_PI429285431	0.8963171	A	1.0053024	A	0.927239994280009	0	lncRNA	48558-1_{1..1698}	"gi|224586933|ref|NR_027251.1| Homo sapiens uncharacterized LOC100129726 (LOC100129726), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224586933|ref|NR_027251.1| Homo sapiens uncharacterized LOC100129726 (LOC100129726), non-coding RNA"	Chr2	 43454350	 43456047	+	100129726	NR_027251.1	NA	NA	NA	NA	NA	inter
CUST_15148_PI429285431	1.2502779	A	1.8374811	A	0.665632047400949	0	lncRNA	16811-1_{1..1041}	lnc-SCIMP-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCIMP-1:4	chr17	  5144071	  5145111	-	lnc-SCIMP-1	lnc-SCIMP-1:4	XLOC_012366	linc-C17orf87	C17orf87	NA	chr17:5134071-5138083	inter
CUST_40398_PI429285431	2.708528	A	2.2393289	A	1.38434074965014	0	lncRNA	41188-1_{1..967}	n409256|NR_033423|lncRNA|Homosapiens||RefGeneNoncode|NR_033423||1.9166300|-0.4631579	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409256|NR_033423|lncRNA|Homosapiens||RefGeneNoncode|NR_033423||1.9166300|-0.4631579	chr2	 83083926	 83084892	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11306_PI429285431	0.9070997	A	0.9076383	A	0.999626740607177	0	lncRNA	12870-1_{1..996}	lnc-CMPK2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CMPK2-4:1	chr2	  6790238	  6791233	-	lnc-CMPK2-4	lnc-CMPK2-4:1	XLOC_001964	linc-RNASEH1-13	NA	NA	NA	inter
CUST_1588_PI429285431	0.90057445	A	0.8966812	A	1.0027022397465	0	lncRNA	1574-1_{1..328}	"transcript_id ""ENST00000473893.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000473893.1"" | genecode_v17"	chr3	182082935	182083262	+	ENSG00000242012.1	ENST00000473893.1	RP11-338L18.1	RP11-338L18.1-001	NA	NA	NA	inter
CUST_29881_PI429285431	6.3254647	P	6.6689825	P	0.788117258854222	0	lncRNA	31644-1_{1..538}	n333904|L38940|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193417|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193417|-1.0851100|-0.2157694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333904|L38940|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193417|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193417|-1.0851100|-0.2157694	chr17	 40722002	 40722539	-	NA	NA	NA	NA	FAM134C	"hg19_refFlat_MLX:range=chr17:40719143-407236215'pad=0,hg19_refFlat_MLX:range=chr17:40719143-407236215'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60chr17:40731526-40733904"	NA	inner
CUST_38849_PI429285431	0.9000805	A	0.90447325	A	0.996959808492796	0	lncRNA	39841-1_{1..1469}	n384695|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kit.2||0.1007660|-0.2997449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384695|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kit.2||0.1007660|-0.2997449	chr5	 86415964	 86417432	+	NA	NA	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-21.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50"	NA	inter
CUST_44958_PI429285431	3.590445	P	3.9048867	P	0.804162128470741	0	lncRNA	49469-1_{1..585}	"gi|397139210|ref|XR_158824.1| PREDICTED: Homo sapiens uncharacterized LOC100996422 (LOC100996422), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139210|ref|XR_158824.1| PREDICTED: Homo sapiens uncharacterized LOC100996422 (LOC100996422), misc_RNA"	NA	NA	NA	NA	NA	XR_158824.1	NA	NA	NA	NA	NA	Unknown
CUST_26075_PI429285431	0.9079211	A	1.2062933	A	0.813169382002934	0	lncRNA	27588-1_{1..431}	lnc-FAM43A-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM43A-10:1	chr3	194816649	194817079	+	lnc-FAM43A-10	lnc-FAM43A-10:1	ENSG00000233303.1	XXYLT1-AS1	C3orf21	NA	chr3:194806649-194826786	inner
CUST_43609_PI429285431	3.4139085	P	3.535402	P	0.919235551176035	0	lncRNA	48372-1_{1..982}	"gi|310118733|ref|XR_108348.1| PREDICTED: Homo sapiens uncharacterized LOC100507670 (LOC100507670), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|310118733|ref|XR_108348.1| PREDICTED: Homo sapiens uncharacterized LOC100507670 (LOC100507670), misc_RNA"	Chr1	151252500	151253481	-	100507670	XR_108348.2	NA	NA	NA	NA	NA	inter
CUST_549_PI429285431	5.124016	P	5.4792895	P	0.781721433650465	0	lncRNA	541-1_{1..279}	"transcript_id ""ENST00000568112.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568112.1"" | genecode_v17"	chr1	208780445	208780723	-	ENSG00000261453.1	ENST00000568112.1	RP11-565N2.1	RP11-565N2.1-001	NA	NA	NA	inter
CUST_23850_PI429285431	2.4786253	A	2.3051422	A	1.12777799598952	0	lncRNA	25413-1_{1..290}	lnc-TM6SF1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TM6SF1-1:3	chr15	 84108172	 84108461	+	lnc-TM6SF1-1	lnc-TM6SF1-1:3	ENSG00000259986.1	RP11-382A20.4	SH3GL3	NA	chr15:84116091-84118197	inter
CUST_45588_PI429285431	0.88872474	A	0.8917774	A	0.997886294356402	0	lncRNA	49979-1_{1..3000}	"gi|219689089|ref|NR_003611.2| Homo sapiens BMS1 pseudogene 5 (BMS1P5), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|219689089|ref|NR_003611.2| Homo sapiens BMS1 pseudogene 5 (BMS1P5), non-coding RNA"	NW_003871068.1	  1057848	  1060847	+	399761	NR_003611.2	NA	NA	NA	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0,hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00"	NA	Unknown
CUST_50145_PI429285431	0.91318905	A	1.558577	A	0.639320850022422	0	lncRNA	53870-1_{1..1222}	hg19_lincRNAsTranscripts_TCONS_l2_00029162 range=chr9:102203-113576 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029162 range=chr9:102203-113576 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	   102203	   103424	-	NA	NA	NA	NA	CBWD1	NA	chr9:121038-123576	inter
CUST_32771_PI429285431	1.0667343	A	1.5707963	A	0.705118677027635	0	lncRNA	34406-1_{1..2092}	n339409|BC033544|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1841|NULL|-1.2211000|-0.3317402	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339409|BC033544|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1841|NULL|-1.2211000|-0.3317402	chr3	106146911	106149002	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43568_PI429285431	0.89789706	A	0.8904797	A	1.00515456144744	0	lncRNA	48342-1_{1..2202}	"gi|349732146|ref|NR_045213.1| Homo sapiens Fc fragment of IgG, high affinity Ib, receptor (CD64) (FCGR1B), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|349732146|ref|NR_045213.1| Homo sapiens Fc fragment of IgG, high affinity Ib, receptor (CD64) (FCGR1B), transcript variant 4, non-coding RNA"	Chr1	120926128	120928329	-	2210	NR_045213.1	NA	NA	NA	NA	NA	inter
CUST_21676_PI429285431	0.9607842	A	0.8893142	A	1.05078681271652	0	lncRNA	23286-1_{1..650}	lnc-DCT-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DCT-2:1	chr13	 94840125	 94840774	-	lnc-DCT-2	lnc-DCT-2:1	ENSG00000236520.1	GPC6-AS1	GPC6	NA	chr13:94830125-94850245	inner
CUST_32484_PI429285431	1.3225355	A	0.92888576	A	1.31371264299906	0	lncRNA	34153-1_{1..2068}	n339089|BC031274|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1519|NULL|-1.1942100|-0.2452246	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339089|BC031274|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1519|NULL|-1.1942100|-0.2452246	chr2	201577027	201579094	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2236_PI429285431	0.9166031	A	1.0402137	A	0.917887597308633	0	lncRNA	2228-1_{1..564}	"transcript_id ""ENST00000506978.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506978.1"" | genecode_v17"	chr5	 87803363	 87803926	-	ENSG00000245526.3	ENST00000506978.1	LINC00461	LINC00461-013	NA	NA	NA	inter
CUST_8974_PI429285431	4.207329	P	4.635151	P	0.743383205324767	0	lncRNA	10506-1_{1..2738}	lnc-PLEKHJ1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLEKHJ1-1:1	chr19	  2215493	  2218230	-	lnc-PLEKHJ1-1	lnc-PLEKHJ1-1:1	ENSG00000246306	ENST00000500296	DOT1L	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DOT1L:range=chr19:2164184-22297915'pad=0,hg19_refFlat_DOT1L:range=chr19:2164184-22297915'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40chr19:2205493-2225564"	NA	inner
LNCA_33_P3364637	5.6602287	P	6.00793	P	0.785835201552623	0	lncRNA	ENST00000378108	XR_109540	XR_109540	NA	Hs.711405	NA	NA	ENST00000378108	THC2484875	NA	"PREDICTED: Homo sapiens hypothetical LOC100132272 (LOC100132272), miscRNA [XR_109540]"	chr19:42747357-42747416	hs|19q13.2	Agilent_HUMAN_G3V2	ENST00000378108	ENST00000378108	chr19	 42747357	 42747416	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52121_PI429285431	1.1286811	A	0.90291184	A	1.16940061892461	0	lncRNA	55646-1_{1..1069}	hg19_lincRNAsTranscripts_TCONS_l2_00018155 range=chr22:20325666-20350461 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018155 range=chr22:20325666-20350461 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 20325666	 20326734	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_341_PI429201921	2.2256274	A	1.5157695	A	1.63564300453722	0	lncRNA	224-2_{3001..6000}	TC05002826.hg.1	TCONS_l2_00023648-XLOC_l2_011921 // Broad TUCP // linc-IRX2-5 chr5:-:4033825-4041877 // chr5 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr5:-:4033825-4041877	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00023648-XLOC_l2_011921	linc-IRX2-5	chr5	  4033825	  4041877	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34936_PI429285431	0.92198634	A	0.91961825	A	1.00164278279848	0	lncRNA	36354-1_{1..412}	n341853|AF085998|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4333|NULL|-1.2696400|-0.6325378	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341853|AF085998|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4333|NULL|-1.2696400|-0.6325378	chr6	 43448920	 43449331	+	NA	NA	NA	NA	TJAP1	NA	chr6:43445261-43459332	inner
CUST_38940_PI429285431	1.2689091	A	0.90253127	A	1.28911219419245	0	lncRNA	39928-1_{1..1548}	n385082|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003srw.1||0.7904860|-0.3125005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385082|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003srw.1||0.7904860|-0.3125005	chr7	  9673899	  9675446	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40730_PI429285431	3.889913	P	4.366473	P	0.71868924411697	0	lncRNA	41464-1_{1..1383}	n410324|NR_037186|lncRNA|Homosapiens||RefGeneNoncode|NR_037186||0.8658300|-0.2534056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410324|NR_037186|lncRNA|Homosapiens||RefGeneNoncode|NR_037186||0.8658300|-0.2534056	chr1	 10490803	 10492185	+	NA	NA	NA	NA	APITD1	NA	chr1:10490159-10502872	inter
CUST_15616_PI429285431	0.9009513	A	0.9131655	A	0.991569499376963	0	lncRNA	17303-1_{1..649}	lnc-ENPP6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENPP6-1:2	chr4	185198330	185198978	-	lnc-ENPP6-1	lnc-ENPP6-1:2	XLOC_004202	linc-ENPP6-3	NA	NA	NA	inter
CUST_40380_PI429285431	6.2408133	P	6.2545543	P	0.990520679315685	0	lncRNA	41175-1_{1..3000}	n409206|NR_033372|lncRNA|Homosapiens||RefGeneNoncode|NR_033372||2.8653700|-0.2694396	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409206|NR_033372|lncRNA|Homosapiens||RefGeneNoncode|NR_033372||2.8653700|-0.2694396	chr18	 54814292	 54817291	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_7249_PI429285431	2.556104	A	2.9181268	A	0.778072879984528	0	lncRNA	7947-1_{1..280}	"transcript_id ""ENST00000516854.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516854.1"" | genecode_v17"	chr8	 36124003	 36124282	+	ENSG00000252663.1	ENST00000516854.1	RN7SKP201	RN7SKP201-201	NA	NA	NA	inter
CUST_15543_PI429285431	1.770456	A	1.2131388	A	1.47153025018095	0	lncRNA	17229-1_{1..538}	lnc-GDAP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GDAP2-1:2	chr1	118148179	118148716	-	lnc-GDAP2-1	lnc-GDAP2-1:2	XLOC_000980	linc-VTCN1-2	FAM46C	NA	chr1:118148604-118158443	inter
CUST_15776_PI429285431	1.1727668	A	1.1694708	A	1.00228722482419	0	lncRNA	17466-1_{1..447}	lnc-DRD5-8:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DRD5-8:5	chr4	 11338947	 11339393	+	lnc-DRD5-8	lnc-DRD5-8:5	XLOC_003455	linc-CPEB2-11	NA	NA	NA	inter
CUST_45029_PI429285431	1.1320448	A	2.066176	A	0.523357544211701	0	lncRNA	49528-1_{1..3000}	"gi|239787136|ref|NR_003561.2| Homo sapiens dpy-19-like 2 pseudogene 2 (C. elegans) (DPY19L2P2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239787136|ref|NR_003561.2| Homo sapiens dpy-19-like 2 pseudogene 2 (C. elegans) (DPY19L2P2), transcript variant 2, non-coding RNA"	Chr7	102815460	102818459	-	349152	NR_003561.2	NA	NA	NA	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80"	NA	inter
LNCA_21_P0001557	2.331224	A	2.0000257	A	1.25805788137437	0	lncRNA	TCONS_00001609	NA	NA	NA	NA	XLOC_000939	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000939), lincRNA [TCONS_00001609]"	chr1:100731030-100730971	hs|1p21.2	Agilent_HUMAN_G3V2	TCONS_00001609	TCONS_00001609	chr1	100730971	100731030	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7181_PI429285431	3.4812028	P	3.2953296	A	1.13750524693411	0	lncRNA	7399-1_{1..95}	"transcript_id ""ENST00000516676.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516676.1"" | genecode_v17"	chr2	206872604	206872698	-	ENSG00000252485.1	ENST00000516676.1	Vault	Vault.4-201	INO80D	NA	chr2:206862604-206882698	inner
CUST_37845_PI429285431	0.90661883	A	0.90350264	A	1.00216231274622	0	lncRNA	38936-1_{1..1233}	n346371|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1921|NULL|-1.3948800|-0.1558112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346371|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1921|NULL|-1.3948800|-0.1558112	chr11	 60796770	 60798002	-	NA	NA	NA	NA	CD6	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70chr11:60786770-60787849"	NA	inter
CUST_11767_PI429285431	0.8993231	A	0.9034925	A	0.997114164198017	0	lncRNA	13347-1_{1..3000}	lnc-POLR2F-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLR2F-1:1	chr22	 38437075	 38440074	+	lnc-POLR2F-1	lnc-POLR2F-1:1	XLOC_014237	linc-PICK1	NA	NA	NA	inter
CUST_25186_PI429285431	2.4413803	A	1.2137214	A	2.34186660359345	0	lncRNA	26717-1_{1..358}	lnc-SAP30-5:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:12	chr4	174462829	174463186	+	lnc-SAP30-5	lnc-SAP30-5:12	ENSG00000237125.3	RP11-471J12.1	NA	NA	NA	inter
LNCA_21_P0008108	0.9154207	A	0.9202303	A	0.996671790130443	0	lncRNA	TCONS_00021877	NA	NA	NA	NA	XLOC_010476	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010476), lincRNA [TCONS_00021877]"	chr13:98200937-98200996	hs|13q32.2	Agilent_HUMAN_G3V2	TCONS_00021877	TCONS_00021877	chr13	 98200937	 98200996	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27089_PI429285431	0.9031235	A	0.90570295	A	0.99821365891497	0	lncRNA	28622-1_{1..1187}	n324200|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000140193|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000140193|-1.1405400|-0.4155715	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324200|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000140193|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000140193|-1.1405400|-0.4155715	chr7	114506247	114507433	+	NA	NA	NA	NA	MDFIC	NA	chr7:114562209-114563604	inter
CUST_42288_PI429285431	2.5973017	A	3.3751643	P	0.583230228176214	0	lncRNA	44902-1_{1..132}	ENST00000364537 ncrna:snoRNA chromosome:GRCh37:X:24151303:24151434:1 gene:ENSG00000201407 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364537 ncrna:snoRNA chromosome:GRCh37:X:24151303:24151434:1 gene:ENSG00000201407 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	 24151303	 24151434	+	ENSG00000201407	ENST00000364537	NA	NA	NA	NA	NA	inter
CUST_29164_PI429285431	0.89148617	A	0.89304984	A	0.998916733705176	0	lncRNA	30907-1_{1..374}	n326675|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096537|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096537|-0.9986980|-0.3025409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326675|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096537|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096537|-0.9986980|-0.3025409	chr1	 22227418	 22227791	+	NA	NA	NA	NA	HSPG2	NA	chr1:22217418-22239692	inner
LNCA_21_P0001009	0.90987235	A	0.91041505	A	0.99962389976854	0	lncRNA	ENST00000445260	NA	NA	NA	NA	XLOC_000375	NA	ENST00000445260	NA	NA	"BROAD Institute lincRNA (XLOC_000375), lincRNA [TCONS_00000290]"	chr1:121169863-121169922	hs|1p11.2	Agilent_HUMAN_G3V2	ENST00000445260	ENST00000445260	chr1	121169863	121169922	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15601_PI429285431	0.89999676	A	0.8944207	A	1.00387250912936	0	lncRNA	17287-2_{3001..6000}	lnc-SMAD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMAD2-1:1	chr18	 45358845	 45361844	-	lnc-SMAD2-1	lnc-SMAD2-1:1	XLOC_012839	linc-IER3IP1	SMAD2	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70chr18:45359466-45366490"	NA	inter
LNCA_21_P0009759	3.0427768	P	3.8601685	P	0.567466959612795	0	lncRNA	AK090548	NA	AK090548	NA	Hs.638550	XLOC_013293	NA	NA	THC2516984	NA	"BROAD Institute lincRNA (XLOC_013293), lincRNA [TCONS_00027290]"	chr19:31619077-31619018	hs|19q12	Agilent_HUMAN_G3V2	AK090548	AK090548	chr19	 31619018	 31619077	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31663_PI429285431	0.8968646	A	0.89814645	A	0.999111883895363	0	lncRNA	33413-1_{1..1437}	n338187|BC036359|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|578|NULL|-0.9116100|-0.1312991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n338187|BC036359|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|578|NULL|-0.9116100|-0.1312991	chr22	 48934711	 48936147	-	NA	NA	NA	NA	FAM19A5	NA	chr22:48924711-48953199	inner
CUST_40177_PI429285431	5.981596	P	6.4340096	P	0.730819178775864	0	lncRNA	41011-1_{1..562}	n407944|NR_027646|lncRNA|Homosapiens||RefGeneNoncode|NR_027646||-0.8010590|-0.1237234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407944|NR_027646|lncRNA|Homosapiens||RefGeneNoncode|NR_027646||-0.8010590|-0.1237234	chr1	116935486	116936047	-	NA	NA	NA	NA	ATP1A1	"hg19_refFlat_ATP1A1:range=chr1:116926717-1169470665'pad=0,hg19_refFlat_ATP1A1:range=chr1:116926717-1169470665'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_ATP1A1:range=chr1:116916134-1169470665'pad=0,hg19_refFlat_ATP1A1:range=chr1:116916134-1169470665'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_ATP1A1:range=chr1:116916852-1169470665'pad=0,hg19_refFlat_ATP1A1:range=chr1:116916852-1169470665'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90chr1:116925486-116947396"	NA	inner
CUST_52073_PI429285431	5.671245	P	5.888011	P	0.860492188063041	0	lncRNA	55601-1_{1..551}	hg19_lincRNAsTranscripts_TCONS_l2_00018296 range=chr22:16189128-16193226 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018296 range=chr22:16189128-16193226 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 16189128	 16189678	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16965_PI429285431	1.5018653	A	2.496344	A	0.501917203062533	0	lncRNA	18677-1_{1..857}	lnc-ZNF177-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF177-2:2	chr19	  9649812	  9650668	+	lnc-ZNF177-2	lnc-ZNF177-2:2	XLOC_012953	linc-UBL5-4	ZNF426	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60chr19:9639812-9649303"	NA	inter
CUST_24248_PI429285431	3.2168522	P	3.1470692	A	1.04955880452625	0	lncRNA	25799-1_{1..511}	lnc-PVALB-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PVALB-1:2	chr22	 37266135	 37266645	-	lnc-PVALB-1	lnc-PVALB-1:2	ENSG00000183822.2	CTA-833B7.2	NCF4	NA	chr22:37257030-37274059	inner
CUST_36276_PI429285431	1.0815424	A	1.3023599	A	0.858079070017026	0	lncRNA	37512-1_{1..1299}	n344806|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_355|NULL|-1.4395800|-0.2253610	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344806|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_355|NULL|-1.4395800|-0.2253610	chr2	114728116	114729414	+	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40"	NA	inter
CUST_1312_PI429285431	0.9124855	A	0.90706295	A	1.00376569773398	0	lncRNA	1301-2_{3001..3830}	"transcript_id ""ENST00000566553.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566553.1"" | genecode_v17"	chr3	 14843838	 14844667	-	ENSG00000260902.1	ENST00000566553.1	RP11-95M5.1	RP11-95M5.1-001	FGD5	NA	chr3:14860469-14862921	inter
CUST_45653_PI429285431	5.1004114	P	1.8190883	A	9.72247149584432	0	lncRNA	50030-1_{1..2583}	"gi|325652053|ref|NR_028033.2| Homo sapiens Fas (TNF receptor superfamily, member 6) (FAS), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|325652053|ref|NR_028033.2| Homo sapiens Fas (TNF receptor superfamily, member 6) (FAS), transcript variant 4, non-coding RNA"	Chr10	 90750288	 90752870	+	355	NR_028033.2	NA	NA	NA	NA	NA	inter
CUST_24643_PI429285431	7.5330076	P	7.768757	P	0.849243749553826	0	lncRNA	26192-1_{1..522}	lnc-TMEM178-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM178-1:2	chr2	 39743555	 39744076	+	lnc-TMEM178-1	lnc-TMEM178-1:2	ENSG00000231312.2	AC007246.3	NA	NA	NA	inter
CUST_35345_PI429285431	1.4082117	A	1.4516939	A	0.970310103414236	0	lncRNA	36756-1_{1..1694}	n342389|CR615536|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4881|NULL|6.7147800|-0.1711523	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342389|CR615536|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4881|NULL|6.7147800|-0.1711523	chr2	 18059131	 18060824	+	NA	NA	NA	NA	KCNS3	NA	chr2:18059945-18114225	inner
CUST_30812_PI429285431	0.92879415	A	1.2314489	A	0.81075911867744	0	lncRNA	32599-1_{1..303}	n336739|Z75934|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328101|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328101|-1.3378900|-0.1561405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336739|Z75934|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328101|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328101|-1.3378900|-0.1561405	chr14	 22466181	 22466483	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2344_PI429285431	6.467947	P	7.04143	P	0.671992482989515	0	lncRNA	2336-1_{1..591}	"transcript_id ""ENST00000510853.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510853.2"" | genecode_v17"	chr5	123731640	123732230	+	ENSG00000251662.2	ENST00000510853.2	CTC-369A16.3	CTC-369A16.3-001	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30"	NA	inter
CUST_32114_PI429285431	0.9008634	A	0.908384	A	0.994800680808294	0	lncRNA	33816-1_{1..828}	n338679|BC039108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1095|NULL|-0.7994600|-0.2918604	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338679|BC039108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1095|NULL|-0.7994600|-0.2918604	chr2	 12855540	 12856367	+	NA	NA	NA	NA	TRIB2	NA	chr2:12856998-12866353	inter
CUST_13297_PI429285431	0.8889779	A	1.0814842	A	0.875084173395462	0	lncRNA	14930-1_{1..1041}	lnc-STX18-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STX18-1:3	chr4	  4577478	  4578518	-	lnc-STX18-1	lnc-STX18-1:3	XLOC_003863	linc-STX18-1	NA	NA	NA	inter
CUST_6385_PI429285431	2.617495	A	3.4227126	P	0.572275758108544	0	lncRNA	6314-2_{3001..3760}	"transcript_id ""ENST00000599078.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000599078.1"" | genecode_v17"	chr19	 21669517	 21670276	+	ENSG00000268658.1	ENST00000599078.1	CTD-2561J22.4	CTD-2561J22.4-001	ZNF429	NA	chr19:21688437-21696040	inter
CUST_41592_PI429285431	0.9079469	A	1.8041066	A	0.537315104715179	0	lncRNA	42925-1_{1..96}	ENST00000384993 ncrna:miRNA chromosome:GRCh37:9:116971714:116971809:1 gene:ENSG00000207726 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384993 ncrna:miRNA chromosome:GRCh37:9:116971714:116971809:1 gene:ENSG00000207726 gene_biotype:miRNA transcript_biotype:miRNA	chr9	116971714	116971809	+	ENSG00000207726	ENST00000384993	NA	NA	COL27A1	NA	chr9:116961714-116981809	inner
CUST_17521_PI429285431	1.105018	A	0.8884842	A	1.1619385719548	0	lncRNA	19245-1_{1..231}	lnc-FSTL5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FSTL5-2:1	chr4	162046001	162046231	-	lnc-FSTL5-2	lnc-FSTL5-2:1	XLOC_004141	linc-C4orf45-2	NA	NA	NA	inter
CUST_16302_PI429285431	5.037069	P	5.47087	P	0.740308757400295	0	lncRNA	18008-1_{1..1251}	lnc-TPO-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPO-2:1	chr2	  1566869	  1568119	+	lnc-TPO-2	lnc-TPO-2:1	XLOC_001314	linc-TTC15-8	NA	NA	NA	inter
CUST_11930_PI429285431	6.973276	P	6.775456	P	1.14696391263418	0	lncRNA	13510-1_{1..505}	lnc-SGTB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SGTB-1:1	chr5	 65220870	 65221374	-	lnc-SGTB-1	lnc-SGTB-1:1	XLOC_004848	linc-SGTB-3	ERBB2IP	NA	chr5:65222384-65231176	inter
CUST_19049_PI429285431	4.36529	P	4.1840143	P	1.13388607847329	0	lncRNA	20739-1_{1..571}	lnc-CREB5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CREB5-2:1	chr7	 28998566	 28999136	+	lnc-CREB5-2	lnc-CREB5-2:1	ENSG00000228421	AC005013.5	TRIL	"hg19_refFlat_TRIL:range=chr7:28995227-289976625'pad=0,hg19_refFlat_TRIL:range=chr7:28995227-289976625'pad=0 3'pad=0 strand=- repeatMasking=none,-106.90chr7:28992974-28998029"	NA	inter
CUST_49871_PI429285431	2.9819894	A	3.342991	P	0.778623827539726	0	lncRNA	53623-1_{1..440}	hg19_lincRNAsTranscripts_TCONS_l2_00026035 range=chr7:76589137-76597860 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026035 range=chr7:76589137-76597860 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 76589137	 76589576	+	NA	NA	NA	NA	NA	"hg19_refFlat_FDPS:range=chr1:155287765-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155287765-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_FDPS:range=chr1:155279856-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155279856-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_FDPS:range=chr1:155279581-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155279581-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80"	NA	inter
CUST_15676_PI429285431	0.8989928	A	1.2990509	A	0.75782776351374	0	lncRNA	17363-2_{3001..6000}	lnc-RP4-725G10.1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP4-725G10.1.1-4:1	chr7	 56608742	 56611741	-	lnc-RP4-725G10.1.1-4	lnc-RP4-725G10.1.1-4:1	XLOC_006457	linc-LOC389493-5	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80"	NA	inter
LNCA_21_P0001564	2.8348532	A	3.3321288	P	0.708443350427866	0	lncRNA	ENST00000420901	NA	NA	NA	NA	XLOC_000948	NA	ENST00000420901	NA	NA	"BROAD Institute lincRNA (XLOC_000948), lincRNA [TCONS_00000596]"	chr1:106132383-106132324	hs|1p21.1	Agilent_HUMAN_G3V2	ENST00000420901	ENST00000420901	chr1	106132324	106132383	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29586_PI429285431	7.1642275	P	7.584028	P	0.747527987480551	0	lncRNA	31346-1_{1..375}	n333093|AF306675|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076863|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076863|1.2417800|-0.3212006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333093|AF306675|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076863|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076863|1.2417800|-0.3212006	chr8	 27632040	 27632414	+	NA	NA	NA	NA	ESCO2	NA	chr8:27632058-27644102	inner
CUST_29142_PI429285431	3.1313467	P	3.9799795	P	0.555310738541812	0	lncRNA	30885-1_{1..1122}	n326652|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091360|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091360|-0.2949920|-0.2436869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326652|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091360|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091360|-0.2949920|-0.2436869	chr1	 31760550	 31761671	+	NA	NA	NA	NA	ZCCHC17	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40chr1:31769842-31771777"	NA	inner
CUST_39906_PI429285431	2.4439518	A	0.8888555	A	2.93853340733123	0	lncRNA	40789-2_{3001..5771}	n406639|NR_024168|lncRNA|Homosapiens||RefGeneNoncode|NR_024168||6.0081600|-0.2357121	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406639|NR_024168|lncRNA|Homosapiens||RefGeneNoncode|NR_024168||6.0081600|-0.2357121	chr9	120469459	120472229	+	NA	NA	NA	NA	TLR4	NA	chr9:120466460-120479768	inner
CUST_11659_PI429285431	1.9189658	A	1.1803731	A	1.66854743342269	0	lncRNA	13236-1_{1..620}	lnc-AC011239.1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC011239.1.1-4:1	chr2	 23431176	 23431795	-	lnc-AC011239.1.1-4	lnc-AC011239.1.1-4:1	XLOC_002019	linc-APOB-1	NA	NA	NA	inter
CUST_8532_PI429285431	3.6406584	P	4.234619	P	0.662521601739764	0	lncRNA	10093-1_{1..453}	lnc-CPN2-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CPN2-4:4	chr3	193776143	193776595	-	lnc-CPN2-4	lnc-CPN2-4:4	ENSG00000230102	RP11-407B7.1	NA	NA	NA	inter
CUST_46585_PI429285431	0.8844203	A	0.88424224	A	1.00012342940375	0	lncRNA	50769-1_{1..1892}	"gi|397139606|ref|XR_158887.1| PREDICTED: Homo sapiens uncharacterized LOC100287538 (LOC100287538), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139606|ref|XR_158887.1| PREDICTED: Homo sapiens uncharacterized LOC100287538 (LOC100287538), misc_RNA"	NA	NA	NA	NA	NA	XR_158887.1	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-62.70"	NA	Unknown
CUST_10252_PI429285431	1.2586365	A	1.2829039	A	0.983319801212858	0	lncRNA	11779-1_{1..372}	lnc-FRG2C-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRG2C-6:1	chr3	 74671577	 74671948	+	lnc-FRG2C-6	lnc-FRG2C-6:1	XLOC_002707	linc-FRG2C-6	NA	NA	NA	inter
CUST_51949_PI429285431	1.0748527	A	0.90918654	A	1.12168389255879	0	lncRNA	55491-1_{1..1642}	hg19_lincRNAsTranscripts_TCONS_l2_00016538 range=chr20:25754889-25769397 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016538 range=chr20:25754889-25769397 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	 25754889	 25756530	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7278_PI429285431	4.049371	P	4.4652863	P	0.749543804977663	0	lncRNA	8141-1_{1..78}	"transcript_id ""ENST00000408115.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000408115.1"" | genecode_v17"	chr10	 93963986	 93964063	-	ENSG00000221042.1	ENST00000408115.1	CPEB3_ribozyme	CPEB3_ribozyme.1-201	CPEB3	NA	chr10:93953986-93974063	inner
CUST_3706_PI429285431	3.6383407	P	4.0533237	P	0.750028332551247	0	lncRNA	3674-1_{1..510}	"transcript_id ""ENST00000441001.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441001.2"" | genecode_v17"	chr10	 63541503	 63542012	-	ENSG00000233643.2	ENST00000441001.2	RP11-491H19.1	RP11-491H19.1-001	NA	NA	NA	inter
CUST_33153_PI429285431	1.7217158	A	2.154711	A	0.740722363468226	0	lncRNA	34749-1_{1..2141}	n339843|AF131757|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2291|NULL|-0.6117740|-0.2241137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n339843|AF131757|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2291|NULL|-0.6117740|-0.2241137	chr18	 34814081	 34816221	-	NA	NA	NA	NA	KIAA1328	NA	chr18:34804081-34805288	inter
LNCA_21_P0008184	0.9009185	A	0.89492494	A	1.00416306077777	0	lncRNA	TCONS_00022059	NA	NA	NA	NA	XLOC_010664	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010664), lincRNA [TCONS_00022059]"	chr13:79360632-79360573	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00022059	TCONS_00022059	chr13	 79360573	 79360632	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31370_PI429285431	4.4618793	P	3.4098105	P	2.07350108189201	0	lncRNA	33149-1_{1..1634}	n337837|CR623574|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|220|NULL|-0.9899130|-0.4959742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337837|CR623574|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|220|NULL|-0.9899130|-0.4959742	chrX	114345281	114346914	-	NA	NA	NA	NA	LRCH2	NA	chrX:114335281-114356915	inner
CUST_51547_PI429285431	0.88385916	A	0.8785422	A	1.00369223540235	0	lncRNA	55113-1_{1..237}	hg19_lincRNAsTranscripts_TCONS_l2_00011094 range=chr17:13202538-13206522 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011094 range=chr17:13202538-13206522 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 13202538	 13202774	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35747_PI429285431	4.027636	P	4.4593897	P	0.74136006068208	0	lncRNA	37167-1_{1..3000}	n342923|BC044836|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5431|NULL|-0.8956280|-0.2988690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342923|BC044836|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5431|NULL|-0.8956280|-0.2988690	chr6	143358751	143361750	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50524_PI429285431	16.354462	P	16.097715	P	1.19478166212022	0	lncRNA	54220-1_{1..371}	hg19_lincRNAsTranscripts_TCONS_l2_00030381 range=chrX:140232676-140233372 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030381 range=chrX:140232676-140233372 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	140232676	140233046	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15031_PI429285431	0.90600216	A	0.91147745	A	0.996212010774346	0	lncRNA	16694-1_{1..2166}	lnc-AC120194.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC120194.1-1:1	chr8	 71396926	 71399091	+	lnc-AC120194.1-1	lnc-AC120194.1-1:1	XLOC_006833	linc-XKR9-3	NA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50"	NA	inter
CUST_24446_PI429285431	1.1581223	A	0.88667506	A	1.20701804111722	0	lncRNA	25999-1_{1..334}	lnc-SLC37A2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC37A2-1:2	chr11	125061062	125061395	+	lnc-SLC37A2-1	lnc-SLC37A2-1:2	ENSG00000259290.1	RP11-687M24.7	PKNOX2	NA	chr11:125051062-125071296	inner
LNCA_21_P0008946	0.9063746	A	0.8997264	A	1.00461881508044	0	lncRNA	TCONS_00024417	NA	NA	NA	NA	XLOC_011726	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011726), lincRNA [TCONS_00024417]"	chr16:52648599-52648658	hs|16q12.2	Agilent_HUMAN_G3V2	TCONS_00024417	TCONS_00024417	chr16	 52648599	 52648658	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009933	0.9068168	A	0.91474634	A	0.994518738937349	0	lncRNA	ENST00000421788	NA	NA	NA	NA	XLOC_013461	NA	ENST00000421788	NA	NA	"BROAD Institute lincRNA (XLOC_013461), lincRNA [TCONS_00028105]"	chr20:10847691-10847750	hs|20p12.2	Agilent_HUMAN_G3V2	ENST00000421788	ENST00000421788	chr20	 10847691	 10847750	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8170_PI429285431	3.0857427	A	3.2190547	P	0.91173597042584	0	lncRNA	9772-1_{1..1686}	lnc-AC040934.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC040934.1-2:1	chr17	 45401616	 45403301	-	lnc-AC040934.1-2	lnc-AC040934.1-2:1	ENSG00000247683	AC068234.1	C17orf57	NA	chr17:45401327-45412367	inner
LNCA_21_P0001326	0.90798795	A	0.90108675	A	1.00479500674993	0	lncRNA	TCONS_00001003	NA	NA	NA	NA	XLOC_000266	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000266), lincRNA [TCONS_00001003]"	chr1:79870141-79870200	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_00001003	TCONS_00001003	chr1	 79870141	 79870200	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32233_PI429285431	0.90235126	A	0.8919012	A	1.00726972671742	0	lncRNA	33925-1_{1..2056}	n338806|S69231|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1229|NULL|6.9558300|-0.2763551	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338806|S69231|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1229|NULL|6.9558300|-0.2763551	chr13	 95092005	 95094060	-	NA	NA	NA	NA	DCT	NA	chr13:95091835-95131936	inner
CUST_6414_PI429285431	6.4965763	P	6.7827435	P	0.820077863414127	0	lncRNA	6353-1_{1..436}	"transcript_id ""ENST00000591338.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591338.1"" | genecode_v17"	chr19	 28269548	 28269983	-	ENSG00000261824.2	ENST00000591338.1	LINC00662	LINC00662-007	NA	NA	NA	inter
CUST_215_PI429201921	5.001714	P	5.0507727	P	0.966566768847992	0	lncRNA	169-2_{3001..5508}	TC18000746.hg.1	TCONS_00026194-XLOC_012701 // Rinn lincRNAs // linc-KIAA1468-2 chr18:+:59415408-59420917 // chr18 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr18:+:59415408-59420917	NA	Affy_HUMAN_HTA2.0	TCONS_00026194-XLOC_012701	linc-KIAA1468-2	chr18	 59415408	 59420917	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3173_PI429285431	0.89923143	A	1.1679528	A	0.830054879936686	0	lncRNA	3153-1_{1..719}	"transcript_id ""ENST00000517848.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517848.1"" | genecode_v17"	chr8	 72691840	 72692558	-	ENSG00000253287.1	ENST00000517848.1	RP11-281N10.1	RP11-281N10.1-001	NA	NA	NA	inter
CUST_20471_PI429285431	1.7476698	A	1.5765839	A	1.12590562207365	0	lncRNA	22115-1_{1..3000}	lnc-RARS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RARS-2:1	chr5	168146944	168149943	+	lnc-RARS-2	lnc-RARS-2:1	ENSG00000254042.1	CTC-558O2.1	SLIT3	"hg19_refFlat_SLIT3:range=chr5:168093459-1687277135'pad=0,hg19_refFlat_SLIT3:range=chr5:168093459-1687277135'pad=0 3'pad=0 strand=- repeatMasking=none,-97.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70chr5:168136944-168157889"	NA	inner
CUST_16177_PI429285431	1.6150595	A	1.1188575	A	1.41049543820818	0	lncRNA	17882-1_{1..536}	lnc-ADHFE1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADHFE1-1:1	chr8	 67387028	 67387563	+	lnc-ADHFE1-1	lnc-ADHFE1-1:1	XLOC_006828	linc-C8orf46	ADHFE1	NA	chr8:67377028-67381044	inter
CUST_20651_PI429285431	4.1104126	P	4.7384152	P	0.647071661099042	0	lncRNA	22290-1_{1..383}	lnc-C15orf54-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C15orf54-1:4	chr15	 39472018	 39472400	+	lnc-C15orf54-1	lnc-C15orf54-1:4	ENSG00000259423.1	RP11-265N7.2	NA	NA	NA	inter
CUST_2730_PI429285431	5.2416735	P	4.850661	P	1.31131337583104	0	lncRNA	2715-1_{1..758}	"transcript_id ""ENST00000438217.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438217.1"" | genecode_v17"	chr6	171034285	171035042	+	ENSG00000213863.2	ENST00000438217.1	XX-C2158C12.2	XX-C2158C12.2-001	NA	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-23.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50"	NA	inter
CUST_41870_PI429285431	0.9081818	A	0.898376	A	1.00682001371577	0	lncRNA	43533-1_{1..86}	ENST00000581030 ncrna:miRNA chromosome:GRCh37:2:71244154:71244239:1 gene:ENSG00000265812 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581030 ncrna:miRNA chromosome:GRCh37:2:71244154:71244239:1 gene:ENSG00000265812 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 71244154	 71244239	+	ENSG00000265812	ENST00000581030	NA	NA	NA	NA	NA	inter
LNCA_21_P0007625	0.9123839	A	0.9041569	A	1.00571881218281	0	lncRNA	TCONS_00020561	NA	NA	NA	NA	XLOC_009879	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009879), lincRNA [TCONS_00020561]"	chr12:111396048-111396107	hs|12q24.11	Agilent_HUMAN_G3V2	TCONS_00020561	TCONS_00020561	chr12	111396048	111396107	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18695_PI429285431	5.5902586	P	5.9261513	P	0.792293735336615	0	lncRNA	20394-1_{1..221}	lnc-MYC-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYC-2:11	chr8	128902835	128903055	+	lnc-MYC-2	lnc-MYC-2:11	ENSG00000249859	PVT1	NA	NA	NA	inter
CUST_17401_PI429285431	4.5825415	P	5.069162	P	0.713694965169326	0	lncRNA	19123-1_{1..360}	lnc-RAB1A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB1A-1:2	chr2	 65283049	 65283408	-	lnc-RAB1A-1	lnc-RAB1A-1:2	XLOC_002133	linc-SERTAD2-4	CEP68	NA	chr2:65283495-65293317	inter
CUST_23243_PI429285431	0.8970726	A	1.1176422	A	0.85822652742989	0	lncRNA	24816-1_{1..562}	lnc-CHTF8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHTF8-2:1	chr16	 68857167	 68857728	-	lnc-CHTF8-2	lnc-CHTF8-2:1	ENSG00000260798.1	RP11-354M1.2	CDH1	"hg19_refFlat_CDH1:range=chr16:68771319-688674025'pad=0,hg19_refFlat_CDH1:range=chr16:68771319-688674025'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60chr16:68847167-68867429"	NA	inner
CUST_49081_PI429285431	5.360642	P	5.4568987	P	0.935457036327673	0	lncRNA	52905-1_{1..1145}	hg19_lincRNAsTranscripts_TCONS_l2_00021052 range=chr4:9146453-9154278 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021052 range=chr4:9146453-9154278 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  9146453	  9147597	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_651_PI429285431	0.9149878	A	1.1734284	A	0.835991048716042	0	lncRNA	643-1_{1..555}	"transcript_id ""ENST00000419028.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419028.2"" | genecode_v17"	chr2	  1576326	  1576880	-	ENSG00000231482.2	ENST00000419028.2	AC141930.2	AC141930.2-001	NA	NA	NA	inter
CUST_50605_PI429285431	1.1059775	A	1.7444363	A	0.642398843183759	0	lncRNA	54292-1_{1..275}	hg19_lincRNAsTranscripts_TCONS_l2_00003844 range=chr10:134325465-134350303 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003844 range=chr10:134325465-134350303 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	134325465	134325739	-	NA	NA	NA	NA	INPP5A	NA	chr10:134351353-134360303	inter
CUST_21800_PI429285431	4.8883877	P	5.387309	P	0.707635681120262	0	lncRNA	23410-1_{1..2686}	lnc-CCNJL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCNJL-1:1	chr5	159631729	159634414	-	lnc-CCNJL-1	lnc-CCNJL-1:1	ENSG00000247699.2	CTB-127C13.1	FABP6	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_FABP6:range=chr5:159626114-1596656665'pad=0,hg19_refFlat_FABP6:range=chr5:159626114-1596656665'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00chr5:159621729-159641833"	NA	inner
CUST_31591_PI429285431	0.89726096	A	1.3255761	A	0.74312914654128	0	lncRNA	33348-1_{1..1352}	n338097|BC030750|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|484|NULL|-1.1616100|-0.1986829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n338097|BC030750|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|484|NULL|-1.1616100|-0.1986829	chr1	 95123088	 95124439	-	NA	NA	NA	NA	SLC44A3	NA	chr1:95285901-95295834	inter
CUST_35182_PI429285431	4.406438	P	4.3546686	P	1.03653540822794	0	lncRNA	36584-1_{1..1068}	n342161|CR618966|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4648|NULL|-1.0553800|-0.2634767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342161|CR618966|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4648|NULL|-1.0553800|-0.2634767	chr6	159463302	159464369	+	NA	NA	NA	NA	TAGAP	NA	chr6:159456024-159466184	inner
CUST_1948_PI429285431	8.35271	P	8.228924	P	1.08959047746027	0	lncRNA	1941-1_{1..495}	"transcript_id ""ENST00000504957.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504957.1"" | genecode_v17"	chr4	153128573	153129067	-	ENSG00000251377.1	ENST00000504957.1	RP11-18H21.3	RP11-18H21.3-001	NA	NA	NA	inter
CUST_32308_PI429285431	0.9163137	A	0.9064653	A	1.00684974360643	0	lncRNA	33991-1_{1..1858}	n338885|AK057260|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1311|NULL|-1.1292000|-0.3136702	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338885|AK057260|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1311|NULL|-1.1292000|-0.3136702	chr2	 74423830	 74425687	-	NA	NA	NA	NA	MTHFD2	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40chr2:74425690-74436149"	NA	inner
CUST_11541_PI429285431	0.8979427	A	0.90681636	A	0.993868124744627	0	lncRNA	13112-1_{1..422}	lnc-SIK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIK1-1:1	chr21	 44810725	 44811146	-	lnc-SIK1-1	lnc-SIK1-1:1	XLOC_014104	linc-U2AF1-1	NA	NA	NA	inter
CUST_29035_PI429285431	6.419917	P	6.705956	P	0.820150739975305	0	lncRNA	30764-1_{1..480}	n326525|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029385|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029385|-0.8547400|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326525|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029385|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029385|-0.8547400|-1.0000000	chr1	 94571410	 94571889	+	NA	NA	NA	NA	ABCA4	NA	chr1:94561410-94582992	inner
LNCA_21_P0004890	0.91602707	A	0.9239375	A	0.9945319124622	0	lncRNA	TCONS_00011831	NA	NA	NA	NA	XLOC_005319	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005319), lincRNA [TCONS_00011831]"	chr6:52066625-52068386	hs|6p12.2	Agilent_HUMAN_G3V2	TCONS_00011831	TCONS_00011831	chr6	 52066625	 52068386	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006222	0.91606057	A	0.9236077	A	0.994782387393088	0	lncRNA	TCONS_00016148	NA	NA	NA	NA	XLOC_007546	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007546), lincRNA [TCONS_00016148]"	chr9:122829367-122829426	hs|9q33.2	Agilent_HUMAN_G3V2	TCONS_00016148	TCONS_00016148	chr9	122829367	122829426	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49384_PI429285431	2.3546202	A	1.46632	A	1.85099397598486	0	lncRNA	53198-1_{1..748}	hg19_lincRNAsTranscripts_TCONS_l2_00023886 range=chr5:126394445-126409081 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023886 range=chr5:126394445-126409081 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	126394445	126395192	-	NA	NA	NA	NA	C5orf63	NA	chr5:126384445-126409184	inner
CUST_14863_PI429285431	1.9824098	A	0.90757346	A	2.10648309792771	0	lncRNA	16526-1_{1..894}	lnc-RP11-552I14.1.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-552I14.1.1-1:3	chr12	103561816	103562709	+	lnc-RP11-552I14.1.1-1	lnc-RP11-552I14.1.1-1:3	XLOC_009858	linc-STAB2-2	NA	NA	NA	inter
CUST_46876_PI429285431	3.5899353	P	4.981925	P	0.381038927970635	0	lncRNA	51003-3_{6001..7936}	"gi|373838807|ref|NR_046054.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 30, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373838807|ref|NR_046054.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 30, non-coding RNA"	Chr17	 48644429	 48646364	+	8913	NR_046054.1	NA	NA	NA	NA	NA	inter
CUST_34933_PI429285431	5.7521353	P	4.375942	P	2.59582531314231	0	lncRNA	36351-3_{6001..6512}	n341850|D87077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4330|NULL|11.4935000|-0.1806690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341850|D87077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4330|NULL|11.4935000|-0.1806690	chr6	 42720695	 42721206	+	NA	NA	NA	NA	KIAA0240	NA	chr6:42788794-42836296	inner
CUST_16451_PI429285431	2.5232558	A	2.9952955	A	0.720944596544784	0	lncRNA	18150-1_{1..3000}	lnc-BTBD17-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTBD17-4:3	chr17	 72108785	 72111784	-	lnc-BTBD17-4	lnc-BTBD17-4:3	XLOC_012572	linc-SDK2-2	NA	NA	NA	inter
CUST_8560_PI429285431	2.9375908	A	2.923738	A	1.00964827665025	0	lncRNA	10119-1_{1..220}	lnc-LPAR6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LPAR6-1:2	chr13	 48877622	 48877841	-	lnc-LPAR6-1	lnc-LPAR6-1:2	ENSG00000231473	RP11-305D15.2	RB1	NA	chr13:48877883-48887795	inter
CUST_7296_PI429285431	0.9095755	A	0.9275105	A	0.987645358376681	0	lncRNA	8309-1_{1..309}	"transcript_id ""ENST00000411194.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411194.1"" | genecode_v17"	chr12	 94402515	 94402823	-	ENSG00000223126.1	ENST00000411194.1	RN7SKP263	RN7SKP263-201	NA	NA	NA	inter
CUST_49237_PI429285431	0.92020917	A	1.0085907	A	0.940577332883638	0	lncRNA	53058-1_{1..2334}	hg19_lincRNAsTranscripts_TCONS_l2_00022815 range=chr5:25126036-25192187 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022815 range=chr5:25126036-25192187 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 25126036	 25128369	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22632_PI429285431	0.90539384	A	0.90674216	A	0.999065852381307	0	lncRNA	24218-1_{1..529}	lnc-KCNC2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNC2-3:1	chr12	 74677374	 74677902	-	lnc-KCNC2-3	lnc-KCNC2-3:1	ENSG00000257183.1	RP11-274M17.3	NA	NA	NA	inter
CUST_1360_PI429285431	0.897391	A	0.8991926	A	0.998752005433243	0	lncRNA	1348-1_{1..758}	"transcript_id ""ENST00000475886.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000475886.1"" | genecode_v17"	chr3	 62936105	 62936862	+	ENSG00000244342.1	ENST00000475886.1	LINC00698	LINC00698-003	NA	NA	NA	inter
CUST_14938_PI429285431	0.9014854	A	0.90100074	A	1.00033599714693	0	lncRNA	16602-1_{1..600}	lnc-ENPP1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENPP1-4:3	chr6	132481907	132482506	+	lnc-ENPP1-4	lnc-ENPP1-4:3	XLOC_005465	linc-TAAR9-1	NA	NA	NA	inter
CUST_17383_PI429285431	1.8305213	A	1.6192344	A	1.15772042292817	0	lncRNA	19105-1_{1..910}	lnc-TCFL5-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TCFL5-3:2	chr20	 61408158	 61409067	-	lnc-TCFL5-3	lnc-TCFL5-3:2	XLOC_013837	linc-GATA5-1	NA	NA	NA	inter
CUST_16020_PI429285431	5.253825	P	5.8107414	P	0.679753509559644	0	lncRNA	17715-1_{1..1023}	lnc-C10orf122-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-C10orf122-1:8	chr10	127400043	127401065	-	lnc-C10orf122-1	lnc-C10orf122-1:8	XLOC_008982	linc-C10orf122-2	C10orf137	NA	chr10:127408084-127410140	inter
LNCA_21_P0003704	0.9081281	A	1.0316079	A	0.917970820122197	0	lncRNA	THC2771827	NA	NA	NA	NA	XLOC_003839	NA	NA	THC2771827	NA	"BROAD Institute lincRNA (XLOC_003839), lincRNA [TCONS_00008387]"	chr4:190198218-190198277	hs|4q35.2	Agilent_HUMAN_G3V2	THC2771827	THC2771827	chr4	190198218	190198277	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34881_PI429285431	0.9014673	A	0.90753424	A	0.99580354746259	0	lncRNA	36306-1_{1..1266}	n341795|CR614225|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4272|NULL|-0.7853240|-0.1770700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341795|CR614225|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4272|NULL|-0.7853240|-0.1770700	chr9	135528238	135529503	+	NA	NA	NA	NA	DDX31	"hg19_refFlat_DDX31:range=chr9:135470253-1355456365'pad=0,hg19_refFlat_DDX31:range=chr9:135470253-1355456365'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_DDX31:range=chr9:135513748-1355456365'pad=0,hg19_refFlat_DDX31:range=chr9:135513748-1355456365'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10chr9:135518238-135545788"	NA	inner
CUST_49148_PI429285431	5.6989555	P	5.2384787	P	1.37599649962848	0	lncRNA	52974-1_{1..1229}	hg19_lincRNAsTranscripts_TCONS_l2_00021267 range=chr4:120355806-120366809 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021267 range=chr4:120355806-120366809 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	120355806	120357034	-	NA	NA	NA	NA	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
CUST_10044_PI429285431	6.110901	P	5.4483776	P	1.58284874503269	0	lncRNA	11570-3_{6001..9000}	lnc-DR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DR1-1:1	chr1	 93803269	 93806268	+	lnc-DR1-1	lnc-DR1-1:1	XLOC_000294	linc-DR1	DR1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60chr1:93811478-93815355"	NA	inter
CUST_40432_PI429285431	12.39083	P	12.378869	P	1.00832519673324	0	lncRNA	41214-1_{1..1765}	n409322|NR_033677|lncRNA|Homosapiens||RefGeneNoncode|NR_033677||7.8625800|-0.1372894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409322|NR_033677|lncRNA|Homosapiens||RefGeneNoncode|NR_033677||7.8625800|-0.1372894	chr19	 19030483	 19032247	+	NA	NA	NA	NA	COPE	NA	chr19:19020483-19030199	inner
CUST_23257_PI429285431	1.4729553	A	1.4412841	A	1.02219553875369	0	lncRNA	24829-1_{1..513}	lnc-WDR16-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR16-3:1	chr17	  9370351	  9370863	+	lnc-WDR16-3	lnc-WDR16-3:1	ENSG00000262815.1	RP11-565F19.4	STX8	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80chr17:9360351-9380739"	NA	inner
CUST_12924_PI429285431	1.5181048	A	1.3443364	A	1.12800104165721	0	lncRNA	14552-1_{1..345}	lnc-GRIK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRIK2-1:1	chr6	101410735	101411079	+	lnc-GRIK2-1	lnc-GRIK2-1:1	XLOC_005405	linc-GRIK2-1	NA	NA	NA	inter
CUST_13371_PI429285431	3.4960704	P	3.1984136	P	1.22914643314786	0	lncRNA	15006-1_{1..391}	lnc-POLG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLG-1:1	chr15	 89901814	 89902204	-	lnc-POLG-1	lnc-POLG-1:1	XLOC_011572	linc-POLG	NA	NA	NA	inter
CUST_11311_PI429285431	0.9088004	A	0.911854	A	0.997885644175466	0	lncRNA	12874-1_{1..969}	lnc-C10orf122-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf122-1:13	chr10	127395621	127396589	-	lnc-C10orf122-1	lnc-C10orf122-1:13	XLOC_008982	linc-C10orf122-2	NA	NA	NA	inter
CUST_7171_PI429285431	0.91635525	A	1.0462749	A	0.913882346919068	0	lncRNA	7319-1_{1..266}	"transcript_id ""ENST00000516138.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516138.1"" | genecode_v17"	chr2	 76822539	 76822804	-	ENSG00000251947.1	ENST00000516138.1	RN7SKP164	RN7SKP164-201	NA	NA	NA	inter
CUST_38657_PI429285431	4.2433124	P	4.675489	P	0.741142776215348	0	lncRNA	39659-1_{1..3000}	n383920|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xml.1||0.1006320|-0.2388136	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383920|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xml.1||0.1006320|-0.2388136	chr20	 43289218	 43292217	-	NA	NA	NA	NA	ADA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr20:43279218-43280376"	NA	inner
CUST_46777_PI429285431	2.896618	A	4.809518	P	0.265558203077891	0	lncRNA	50924-1_{1..2201}	"gi|397787581|ref|NR_073067.1| Homo sapiens solute carrier family 5 (sodium/glucose cotransporter), member 10 (SLC5A10), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397787581|ref|NR_073067.1| Homo sapiens solute carrier family 5 (sodium/glucose cotransporter), member 10 (SLC5A10), transcript variant 5, non-coding RNA"	Chr17	 18853989	 18856189	+	125206	NR_073067.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0013770	0.90001166	A	0.89740217	A	1.00181039743043	0	lncRNA	TCONS_l2_00030251	NA	NA	NA	NA	XLOC_l2_015561	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015561), lincRNA [TCONS_l2_00030251]"	chrX:73169509-73169568	hs|Xq13.2	Agilent_HUMAN_G3V2	TCONS_l2_00030251	TCONS_l2_00030251	chrX	 73169509	 73169568	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18883_PI429285431	6.8374267	P	6.6982756	P	1.1012569316952	0	lncRNA	20577-1_{1..583}	lnc-GNAT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNAT1-1:1	chr3	 50252085	 50252667	+	lnc-GNAT1-1	lnc-GNAT1-1:1	ENSG00000188338	SLC38A3	SLC38A3	NA	chr3:50242692-50258406	inner
CUST_1500_PI429285431	7.156502	P	7.4656396	P	0.80712408971722	0	lncRNA	1487-1_{1..554}	"transcript_id ""ENST00000482382.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000482382.1"" | genecode_v17"	chr3	151835962	151836515	-	ENSG00000239941.1	ENST00000482382.1	RP11-246A10.1	RP11-246A10.1-001	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20"	NA	inter
CUST_35480_PI429285431	5.8361034	P	5.0303473	P	1.74806169098129	0	lncRNA	36888-2_{3001..4079}	n342578|BC035645|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5077|NULL|9.4530500|-0.2458159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342578|BC035645|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5077|NULL|9.4530500|-0.2458159	chr4	 22392504	 22393582	-	NA	NA	NA	NA	GPR125	NA	chr4:22388999-22517672	inner
CUST_20182_PI429285431	5.42233	P	5.487627	P	0.955748542440874	0	lncRNA	21826-1_{1..252}	lnc-RP11-295K3.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RP11-295K3.1.1-1:1	chr11	  1784772	  1785023	-	lnc-RP11-295K3.1.1-1	lnc-RP11-295K3.1.1-1:1	ENSG00000229512.1	AC068580.5	CTSD	NA	chr11:1774772-1785222	inner
CUST_4830_PI429285431	0.89203113	A	0.9017944	A	0.993255464095719	0	lncRNA	4773-1_{1..726}	"transcript_id ""ENST00000436530.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436530.1"" | genecode_v17"	chr14	 54066550	 54067275	-	ENSG00000225680.1	ENST00000436530.1	AL163953.2	AL163953.2-001	NA	NA	NA	inter
CUST_48085_PI429285431	3.5162773	P	4.010673	P	0.709858953633449	0	lncRNA	51961-1_{1..849}	"gi|341914626|ref|XR_133415.1| PREDICTED: Homo sapiens uncharacterized LOC100128340 (LOC100128340), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341914626|ref|XR_133415.1| PREDICTED: Homo sapiens uncharacterized LOC100128340 (LOC100128340), misc_RNA"	NA	NA	NA	NA	NA	XR_133415.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011822	8.571937	P	8.547373	P	1.01717224381592	0	lncRNA	ENST00000428157	NA	NA	NA	NA	XLOC_l2_007449	NA	ENST00000428157	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007449), lincRNA [TCONS_l2_00013837]"	chr2:98287931-98287990	hs|2q11.2	Agilent_HUMAN_G3V2	ENST00000428157	ENST00000428157	chr2	 98287931	 98287990	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46488_PI429285431	0.93070143	A	0.89666814	A	1.02387052583478	0	lncRNA	50683-1_{1..3000}	"gi|338827611|ref|NR_040051.1| Homo sapiens IQCH antisense RNA 1 (IQCH-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|338827611|ref|NR_040051.1| Homo sapiens IQCH antisense RNA 1 (IQCH-AS1), transcript variant 1, non-coding RNA"	Chr15	 67695949	 67698948	-	100506686	NR_040051.1	NA	NA	NA	"hg19_refFlat_IQCH:range=chr15:67547235-677930845'pad=0,hg19_refFlat_IQCH:range=chr15:67547235-677930845'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_C15orf61:range=chr15:67813587-678188835'pad=0,hg19_refFlat_C15orf61:range=chr15:67813587-678188835'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40"	NA	inter
CUST_28101_PI429285431	7.326938	P	7.4865746	P	0.895250546907872	0	lncRNA	29723-1_{1..440}	n325373|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324042|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324042|-1.3454000|-0.3418302	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325373|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324042|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324042|-1.3454000|-0.3418302	chr2	 22612855	 22613294	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51111_PI429285431	3.056697	P	3.5972652	P	0.68750008642635	0	lncRNA	54748-1_{1..935}	hg19_lincRNAsTranscripts_TCONS_l2_00006985 range=chr13:103532169-103544146 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006985 range=chr13:103532169-103544146 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	103532169	103533103	+	NA	NA	NA	NA	BIVM-ERCC5	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50chr13:103522169-103528351"	NA	inter
CUST_31316_PI429285431	1.956471	A	0.8863134	A	2.09966272186517	0	lncRNA	33099-1_{1..2263}	n337782|AK026301|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|164|NULL|-1.2448900|-0.4221083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337782|AK026301|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|164|NULL|-1.2448900|-0.4221083	chrX	 83316395	 83318657	-	NA	NA	NA	NA	RPS6KA6	NA	chrX:83313354-83328644	inner
LNCA_21_P0006870	5.999122	P	5.957783	P	1.02906848680319	0	lncRNA	TCONS_00018197	NA	NA	NA	NA	XLOC_008479	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008479), lincRNA [TCONS_00018197]"	chr10:47571839-47575613	hs|10q11.22	Agilent_HUMAN_G3V2	TCONS_00018197	TCONS_00018197	chr10	 47571839	 47575613	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4712_PI429285431	3.311901	P	1.6166759	A	3.23827408635895	0	lncRNA	4659-1_{1..549}	"transcript_id ""ENST00000412017.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412017.1"" | genecode_v17"	chr14	 19650021	 19650569	+	ENSG00000225210.5	ENST00000412017.1	AL589743.1	AL589743.1-004	NA	NA	NA	inter
CUST_39497_PI429285431	3.1274393	A	2.687807	A	1.35625861346457	0	lncRNA	40444-1_{1..1632}	n387228|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ahn.1||6.4389800|-0.1629630	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n387228|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ahn.1||6.4389800|-0.1629630	chr22	 20386525	 20388156	-	NA	NA	NA	NA	TMEM191B	NA	chr22:20376525-20380440	inter
CUST_25210_PI429285431	0.88994366	A	0.89155066	A	0.998886732623265	0	lncRNA	26741-1_{1..744}	lnc-MSX2-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MSX2-4:6	chr5	173959038	173959781	+	lnc-MSX2-4	lnc-MSX2-4:6	ENSG00000249306.1	RP11-267A15.1	NA	NA	NA	inter
CUST_30599_PI429285431	1.1422303	A	2.331902	A	0.438402612302465	0	lncRNA	32381-1_{1..363}	n335896|X64243|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322681|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322681|2.4093900|-0.0781657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335896|X64243|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322681|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322681|2.4093900|-0.0781657	chr14	106330425	106330787	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005911	6.432436	P	6.397928	P	1.02420747961698	0	lncRNA	TCONS_00015178	NA	NA	NA	NA	XLOC_007231	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007231), lincRNA [TCONS_00015178]"	chr8:134420409-134420350	hs|8q24.22	Agilent_HUMAN_G3V2	TCONS_00015178	TCONS_00015178	chr8	134420350	134420409	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_533_PI429285431	1.3446866	A	0.884713	A	1.37551664721262	0	lncRNA	525-1_{1..942}	"transcript_id ""ENST00000412162.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412162.1"" | genecode_v17"	chr1	198776622	198777563	-	ENSG00000229989.3	ENST00000412162.1	RP11-31E23.1	RP11-31E23.1-002	NA	NA	NA	inter
CUST_49500_PI429285431	9.953148	P	9.778113	P	1.12899179398566	0	lncRNA	53291-1_{1..341}	hg19_lincRNAsTranscripts_TCONS_l2_00024643 range=chr6:20042903-20045304 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024643 range=chr6:20042903-20045304 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 20042903	 20043243	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45953_PI429285431	4.2687078	P	3.7515428	P	1.43114018914324	0	lncRNA	50248-1_{1..3000}	"gi|242247144|ref|NR_027949.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant gamma, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|242247144|ref|NR_027949.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant gamma, non-coding RNA"	NA	NA	NA	NA	NA	NR_027949.1	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70"	NA	Unknown
CUST_40822_PI429285431	1.8013057	A	0.892218	A	1.87785764426421	0	lncRNA	41525-1_{1..1939}	n410590|NR_037852_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037852_2||-0.7410280|-0.2359989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410590|NR_037852_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037852_2||-0.7410280|-0.2359989	chr6	  2791676	  2793614	-	NA	NA	NA	NA	WRNIP1	"hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70chr6:2781676-2785979"	NA	inter
CUST_29976_PI429285431	1.0549608	A	1.7943221	A	0.599004480750333	0	lncRNA	31742-1_{1..306}	n334232|S63837|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216035|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216035|0.8434170|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334232|S63837|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216035|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216035|0.8434170|-1.0000000	chr1	 41945125	 41945430	-	NA	NA	NA	NA	EDN2	NA	chr1:41944446-41950344	inner
CUST_31846_PI429285431	3.5221324	A	3.5296805	A	0.994781718548624	0	lncRNA	33579-1_{1..1004}	n338394|BC004969|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|790|NULL|-1.1170900|-0.2007190	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338394|BC004969|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|790|NULL|-1.1170900|-0.2007190	chr1	179850741	179851744	-	NA	NA	NA	NA	TOR1AIP2	"hg19_refFlat_TOR1AIP1:range=chr1:179851638-1798873745'pad=0,hg19_refFlat_TOR1AIP1:range=chr1:179851638-1798873745'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.60chr1:179840741-179846941"	NA	inner
CUST_30100_PI429285431	7.7636313	P	8.090572	P	0.797225244716824	0	lncRNA	31872-1_{1..316}	n334640|U96389|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000222835|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000222835|1.4210600|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334640|U96389|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000222835|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000222835|1.4210600|-1.0000000	chr15	 22472897	 22473212	-	NA	NA	NA	NA	LOC642131	NA	chr15:22471454-22473353	inter
CUST_36519_PI429285431	1.2612092	A	0.92357326	A	1.26368417109935	0	lncRNA	37718-1_{1..839}	n345019|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_568|NULL|-1.4007900|-0.3820021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345019|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_568|NULL|-1.4007900|-0.3820021	chr8	110172719	110173557	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21638_PI429285431	2.844937	A	3.3442428	P	0.707447110661919	0	lncRNA	23250-1_{1..1699}	lnc-FUCA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FUCA2-1:1	chr6	143883022	143884720	-	lnc-FUCA2-1	lnc-FUCA2-1:1	ENSG00000235740.1	RP11-436I24.1	NA	NA	NA	inter
CUST_4512_PI429285431	0.9065057	A	0.9150085	A	0.994123641884985	0	lncRNA	4461-1_{1..739}	"transcript_id ""ENST00000539362.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539362.1"" | genecode_v17"	chr12	130005848	130006586	-	ENSG00000256085.1	ENST00000539362.1	RP11-337L12.1	RP11-337L12.1-001	TMEM132D	NA	chr12:129995848-130017308	inner
CUST_38369_PI429285431	0.89405656	A	0.8951109	A	0.99926945418028	0	lncRNA	39411-1_{1..3000}	n382181|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001xqo.1||-0.7546410|-0.3801802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382181|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001xqo.1||-0.7546410|-0.3801802	chr14	 75292223	 75295222	+	NA	NA	NA	NA	YLPM1	NA	chr14:75282223-75304013	inner
CUST_23432_PI429285431	5.3042903	P	5.463987	P	0.895213253207082	0	lncRNA	25000-1_{1..426}	lnc-DUOX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DUOX2-1:1	chr15	 45366019	 45366444	-	lnc-DUOX2-1	lnc-DUOX2-1:1	ENSG00000259352.1	RP11-109D20.2	SORD	"hg19_refFlat_SORD:range=chr15:45315482-453657285'pad=0,hg19_refFlat_SORD:range=chr15:45315482-453657285'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr15:45356019-45367287"	NA	inner
CUST_23936_PI429285431	4.5566463	P	4.4158573	P	1.10250790502499	0	lncRNA	25493-1_{1..531}	lnc-PABPN1L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PABPN1L-1:2	chr16	 89003994	 89004524	-	lnc-PABPN1L-1	lnc-PABPN1L-1:2	ENSG00000261226.1	RP11-830F9.7	CBFA2T3	NA	chr16:88993994-89014164	inner
CUST_17863_PI429285431	2.3838527	A	3.0473485	A	0.631346623558119	0	lncRNA	19600-1_{1..324}	lnc-JAM3-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JAM3-3:8	chr11	133909657	133909980	+	lnc-JAM3-3	lnc-JAM3-3:8	XLOC_009341	linc-JAM3-2	NA	NA	NA	inter
LNCA_21_P0012994	0.9114949	A	0.903917	A	1.00526641910783	0	lncRNA	AK130833	NA	AK130833	NA	Hs.689293	XLOC_l2_012082	NA	NA	THC2483164	NA	"BROAD Institute lincRNA (XLOC_l2_012082), lincRNA [TCONS_l2_00023776]"	chr5:34179720-33792424	hs|5p13.3	Agilent_HUMAN_G3V2	AK130833	AK130833	chr5	 33792424	 34179720	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15182_PI429285431	1.9860222	A	1.3619785	A	1.54118889944114	0	lncRNA	16847-1_{1..1040}	lnc-CDK12-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK12-1:2	chr17	 37723041	 37724080	+	lnc-CDK12-1	lnc-CDK12-1:2	XLOC_012192	linc-PPP1R1B	NA	NA	NA	inter
LNCA_21_P0002419	1.3411964	A	0.90414953	A	1.35383026131608	0	lncRNA	TCONS_00004195	NA	NA	NA	NA	XLOC_002041	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002041), lincRNA [TCONS_00004195]"	chr2:30626829-30566811	hs|2p23.1	Agilent_HUMAN_G3V2	TCONS_00004195	TCONS_00004195	chr2	 30566811	 30626829	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7195_PI429285431	0.92606544	A	0.9276188	A	0.998923872336718	0	lncRNA	7528-1_{1..223}	"transcript_id ""ENST00000516448.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516448.1"" | genecode_v17"	chr3	181686247	181686469	+	ENSG00000252257.1	ENST00000516448.1	RN7SKP265	RN7SKP265-201	NA	NA	NA	inter
CUST_27717_PI429285431	5.8250074	P	5.7509165	P	1.05269748001292	0	lncRNA	29297-1_{1..1854}	n324930|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000267816|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000267816|2.8332900|-0.1309956	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324930|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000267816|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000267816|2.8332900|-0.1309956	chr20	 55965587	 55967440	-	NA	NA	NA	NA	RBM38	"hg19_refFlat_RBM24:range=chr6:17281813-172923505'pad=0,hg19_refFlat_RBM24:range=chr6:17281813-172923505'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_RBM38:range=chr20:55966638-559829025'pad=0,hg19_refFlat_RBM38:range=chr20:55966638-559829025'pad=0 3'pad=0 strand=+ repeatMasking=none,-110.40;hg19_refFlat_RBM38:range=chr20:55966638-559826035'pad=0,hg19_refFlat_RBM38:range=chr20:55966638-559826035'pad=0 3'pad=0 strand=+ repeatMasking=none,-110.40chr20:55966454-55978122"	NA	inner
CUST_38077_PI429285431	2.3036354	A	2.6821952	A	0.769205082293626	0	lncRNA	39153-1_{1..1122}	n381059|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ays.2||6.0891800|-0.0798677	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381059|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ays.2||6.0891800|-0.0798677	chr1	 16804749	 16805870	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2402_PI429285431	1.0987122	A	1.866042	A	0.587503845513926	0	lncRNA	2394-1_{1..1734}	"transcript_id ""ENST00000518984.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518984.1"" | genecode_v17"	chr5	153863477	153865210	-	ENSG00000254293.1	ENST00000518984.1	CTB-158E9.1	CTB-158E9.1-001	HAND1	NA	chr5:153854532-153857824	inter
CUST_24213_PI429285431	6.473861	P	6.970928	P	0.708545792013309	0	lncRNA	25764-1_{1..969}	lnc-NPB-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPB-2:4	chr17	 79887854	 79888822	+	lnc-NPB-2	lnc-NPB-2:4	ENSG00000265688.1	MAFG-AS1	MYADML2	"hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00chr17:79897521-79898393"	NA	inter
CUST_8590_PI429285431	1.3648198	A	1.9534802	A	0.664960062469032	0	lncRNA	10146-1_{1..556}	lnc-MKRN2-AS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MKRN2-AS1-1:1	chr3	 12580882	 12581437	-	lnc-MKRN2-AS1-1	lnc-MKRN2-AS1-1:1	ENSG00000236001	ENST00000431680	LOC100129480	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30chr3:12581280-12586963"	NA	inter
CUST_8893_PI429285431	1.4225421	A	2.8334985	A	0.376062302735924	0	lncRNA	10429-1_{1..1120}	lnc-CREB3L4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CREB3L4-1:1	chr1	153907212	153908331	+	lnc-CREB3L4-1	lnc-CREB3L4-1:1	ENSG00000234010	ENST00000413970	DENND4B	"hg19_refFlat_DENND4B:range=chr1:153902773-1539168505'pad=0,hg19_refFlat_DENND4B:range=chr1:153902773-1539168505'pad=0 3'pad=0 strand=- repeatMasking=none,-99.70chr1:153901977-153917635"	NA	inner
CUST_4407_PI429285431	1.0087702	A	1.7231554	A	0.609464798031874	0	lncRNA	4357-1_{1..674}	"transcript_id ""ENST00000547607.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547607.1"" | genecode_v17"	chr12	111374411	111375084	+	ENSG00000185847.3	ENST00000547607.1	RP1-46F2.2	RP1-46F2.2-004	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10"	NA	inter
CUST_6397_PI429285431	0.91556203	A	0.9084877	A	1.00491559397939	0	lncRNA	6329-1_{1..383}	"transcript_id ""ENST00000600673.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600673.1"" | genecode_v17"	chr19	 23089888	 23090270	-	ENSG00000268296.1	ENST00000600673.1	CTD-2579N5.3	CTD-2579N5.3-001	NA	NA	NA	inter
CUST_14899_PI429285431	10.683734	P	10.399502	P	1.21776183137599	0	lncRNA	16562-1_{1..982}	lnc-CYTL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CYTL1-1:1	chr4	  4924406	  4925387	-	lnc-CYTL1-1	lnc-CYTL1-1:1	XLOC_003865	linc-STX18-2	NA	NA	NA	inter
LNCA_21_P0007538	1.7502878	A	0.92471033	A	1.77224427548459	0	lncRNA	TCONS_00020366	NA	NA	NA	NA	XLOC_009696	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009696), lincRNA [TCONS_00020366]"	chr12:29209495-29209554	hs|12p11.22	Agilent_HUMAN_G3V2	TCONS_00020366	TCONS_00020366	chr12	 29209495	 29209554	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30358_PI429285431	12.148564	P	12.200771	P	0.964459792550734	0	lncRNA	32134-1_{1..673}	n335453|AY687925|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257257|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257257|2.4432900|-0.1801302	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335453|AY687925|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257257|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257257|2.4432900|-0.1801302	chr11	 62334411	 62335083	-	NA	NA	NA	NA	EEF1G	NA	chr11:62327073-62341460	inner
CUST_6693_PI429285431	0.8979813	A	0.9018286	A	0.997336807458406	0	lncRNA	6642-1_{1..640}	"transcript_id ""ENST00000423153.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423153.1"" | genecode_v17"	chr20	 38660227	 38660866	+	ENSG00000233415.1	ENST00000423153.1	RP11-101E14.3	RP11-101E14.3-001	NA	NA	NA	inter
CUST_47668_PI429285431	4.437346	P	4.518018	P	0.945617080508312	0	lncRNA	51650-1_{1..3000}	"gi|283945611|ref|NR_033237.1| Homo sapiens family with sequence similarity 3, member A (FAM3A), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|283945611|ref|NR_033237.1| Homo sapiens family with sequence similarity 3, member A (FAM3A), transcript variant 5, non-coding RNA"	ChrX	153733323	153736322	-	60343	NR_033237.1	NA	NA	NA	NA	NA	inter
CUST_45613_PI429285431	10.174207	P	9.187562	P	1.98157146669236	0	lncRNA	49998-1_{1..1122}	"gi|301336137|ref|NR_036430.1| Homo sapiens serglycin (SRGN), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301336137|ref|NR_036430.1| Homo sapiens serglycin (SRGN), transcript variant 2, non-coding RNA"	Chr10	 70847828	 70848949	+	5552	NR_036430.1	NA	NA	NA	NA	NA	inter
CUST_3340_PI429285431	2.0226302	A	2.3798616	A	0.780661268980424	0	lncRNA	3318-1_{1..596}	"transcript_id ""ENST00000521793.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521793.1"" | genecode_v17"	chr8	139075511	139076106	+	ENSG00000253988.1	ENST00000521793.1	RP11-489O18.1	RP11-489O18.1-001	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80"	NA	inter
CUST_40937_PI429285431	0.90736276	A	1.1451488	A	0.848045725382331	0	lncRNA	41618-4_{9001..9918}	n410890|NR_038352|lncRNA|Homosapiens||RefGeneNoncode|NR_038352||2.1744600|-0.3788877	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410890|NR_038352|lncRNA|Homosapiens||RefGeneNoncode|NR_038352||2.1744600|-0.3788877	chr5	112321406	112322323	+	NA	NA	NA	NA	MCC	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-10.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.61;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chr5:112357796-112367892"	NA	inner
CUST_9214_PI429285431	2.487269	A	2.0956767	A	1.31184048119383	0	lncRNA	10725-1_{1..2851}	lnc-ZCCHC24-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZCCHC24-3:7	chr10	 80721011	 80723861	-	lnc-ZCCHC24-3	lnc-ZCCHC24-3:7	ENSG00000224596	XLOC_008863	NA	NA	NA	inter
CUST_18169_PI429285431	0.91695863	A	1.1558375	A	0.847403580741883	0	lncRNA	19904-1_{1..1579}	lnc-CCNJ-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCNJ-1:5	chr10	 97915954	 97917532	+	lnc-CCNJ-1	lnc-CCNJ-1:5	ENSG00000177853	ZNF518A	ZNF518A	NA	chr10:97905954-97923517	inner
CUST_31705_PI429285431	0.8964626	A	0.89919364	A	0.998108777942433	0	lncRNA	33448-2_{3001..3596}	n338234|BX538140|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|626|NULL|-0.7236480|-0.3513988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n338234|BX538140|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|626|NULL|-0.7236480|-0.3513988	chr14	 28084793	 28085388	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11970_PI429285431	0.91053694	A	0.9184957	A	0.994498596396864	0	lncRNA	13550-1_{1..321}	lnc-DHX37-9:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-9:8	chr12	127174796	127175116	-	lnc-DHX37-9	lnc-DHX37-9:8	XLOC_010243	linc-DHX37-8	NA	NA	NA	inter
CUST_32615_PI429285431	0.9096211	A	0.9155238	A	0.995916918674015	0	lncRNA	34274-1_{1..2591}	n339238|BC043241|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1670|NULL|-0.2919180|-0.3348711	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339238|BC043241|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1670|NULL|-0.2919180|-0.3348711	chr16	 63090692	 63093282	-	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40"	NA	inter
CUST_31892_PI429285431	0.9045702	A	0.91162103	A	0.995124660302484	0	lncRNA	33624-1_{1..3000}	n338447|BC037533|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|844|NULL|-1.0351200|-0.2573086	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n338447|BC037533|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|844|NULL|-1.0351200|-0.2573086	chr1	200993088	200996087	+	NA	NA	NA	NA	KIF21B	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40chr1:200983088-200992828"	NA	inter
LNCA_21_P0007210	5.1831527	P	5.090105	P	1.06662104606896	0	lncRNA	TCONS_00019299	NA	NA	NA	NA	XLOC_009126	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009126), lincRNA [TCONS_00019299]"	chr11:46183057-46183116	hs|11p11.2	Agilent_HUMAN_G3V2	TCONS_00019299	TCONS_00019299	chr11	 46183057	 46183116	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13404_PI429285431	0.8974204	A	0.89656186	A	1.00059527168431	0	lncRNA	15041-1_{1..791}	lnc-NRSN1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NRSN1-2:1	chr6	 23404092	 23404882	+	lnc-NRSN1-2	lnc-NRSN1-2:1	XLOC_005202	linc-NRSN1-2	NA	NA	NA	inter
LNCA_21_P0013828	3.868113	P	4.2310157	P	0.777598477859844	0	lncRNA	TCONS_l2_00030581	NA	NA	NA	NA	XLOC_l2_015803	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015803), lincRNA [TCONS_l2_00030581]"	chrX:118012124-118012065	hs|Xq24	Agilent_HUMAN_G3V2	TCONS_l2_00030581	TCONS_l2_00030581	chrX	118012065	118012124	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12820_PI429285431	0.9057559	A	1.670186	A	0.588685868071587	0	lncRNA	14447-1_{1..503}	lnc-SCCPDH-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCCPDH-1:7	chr1	246944781	246945283	+	lnc-SCCPDH-1	lnc-SCCPDH-1:7	XLOC_000643	linc-VN1R5-3	LOC100130097	NA	chr1:246935180-246948062	inter
CUST_34636_PI429285431	0.8964537	A	1.1475558	A	0.840254285058421	0	lncRNA	36090-1_{1..1175}	n341535|BC062758|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4005|NULL|-0.6145740|-0.2818785	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341535|BC062758|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4005|NULL|-0.6145740|-0.2818785	chr8	 76135640	 76136814	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41103_PI429285431	6.686495	P	6.7190657	P	0.977676648497712	0	lncRNA	41828-1_{1..86}	ENST00000581751 ncrna:miRNA chromosome:GRCh37:11:101390551:101390636:-1 gene:ENSG00000263885 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581751 ncrna:miRNA chromosome:GRCh37:11:101390551:101390636:-1 gene:ENSG00000263885 gene_biotype:miRNA transcript_biotype:miRNA	chr11	101390551	101390636	-	ENSG00000263885	ENST00000581751	NA	NA	TRPC6	NA	chr11:101380551-101400636	inner
LNCA_21_P0011114	0.91050714	A	0.91171944	A	0.999160050628138	0	lncRNA	AK093124	NA	AK093124	NA	Hs.130744	XLOC_l2_003400	NA	NA	THC2625628	NA	"BROAD Institute lincRNA (XLOC_l2_003400), lincRNA [TCONS_l2_00006655]"	chr12:58959802-58959743	hs|12q14.1	Agilent_HUMAN_G3V2	AK093124	AK093124	chr12	 58959743	 58959802	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9662_PI429285431	5.3667126	P	5.386191	P	0.986589337023617	0	lncRNA	11179-1_{1..768}	lnc-RP11-17A1.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-17A1.2.1-1:1	chr11	 22881923	 22882690	-	lnc-RP11-17A1.2.1-1	lnc-RP11-17A1.2.1-1:1	XLOC_009393	linc-SVIP	LOC100500938	NA	chr11:22871923-22881972	inner
CUST_30847_PI429285431	2.5412502	A	2.5069711	A	1.02404499032573	0	lncRNA	32635-1_{1..401}	n336825|AJ581135|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330106|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330106|1.3234100|-0.3694041	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336825|AJ581135|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330106|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330106|1.3234100|-0.3694041	chr8	 18067648	 18068048	+	NA	NA	NA	NA	NAT1	NA	chr8:18067290-18081198	inner
CUST_32197_PI429285431	1.8419658	A	0.89125544	A	1.9328241153187	0	lncRNA	33894-1_{1..2130}	n338771|AF090889|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1193|NULL|-1.2251600|-0.4953547	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338771|AF090889|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1193|NULL|-1.2251600|-0.4953547	chr13	 74374210	 74376339	+	NA	NA	NA	NA	KLF12	NA	chr13:74364210-74386340	inner
CUST_48765_PI429285431	0.8902963	A	1.330635	A	0.736961572639965	0	lncRNA	52602-1_{1..391}	hg19_lincRNAsTranscripts_TCONS_l2_00014982 range=chr2:171586203-171586923 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014982 range=chr2:171586203-171586923 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	171586203	171586593	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32252_PI429285431	0.90791607	A	1.3226107	A	0.750178265337779	0	lncRNA	33943-2_{3001..4956}	n338826|BC036774|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1249|NULL|-0.9527720|-0.2017699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338826|BC036774|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1249|NULL|-0.9527720|-0.2017699	chr12	   251699	   253654	-	NA	NA	NA	NA	IQSEC3	"hg19_refFlat_IQSEC3:range=chr12:247439-2804875'pad=0,hg19_refFlat_IQSEC3:range=chr12:247439-2804875'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60;hg19_refFlat_IQSEC3:range=chr12:176049-2841995'pad=0,hg19_refFlat_IQSEC3:range=chr12:176049-2841995'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60chr12:238699-268281"	NA	inner
CUST_15021_PI429285431	5.3703213	P	5.572707	P	0.869112174610216	0	lncRNA	16683-1_{1..731}	lnc-TPM4-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPM4-2:9	chr19	 16134120	 16134850	+	lnc-TPM4-2	lnc-TPM4-2:9	XLOC_012983	linc-TPM4-2	NA	NA	NA	inter
CUST_819_PI429285431	5.919011	P	6.4568377	P	0.688807759467837	0	lncRNA	812-1_{1..849}	"transcript_id ""ENST00000439700.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439700.1"" | genecode_v17"	chr2	 28671034	 28671882	-	ENSG00000227938.1	ENST00000439700.1	AC104695.4	AC104695.4-001	NA	NA	NA	inter
CUST_50507_PI429285431	0.9208781	A	1.0899439	A	0.889418427052626	0	lncRNA	54203-1_{1..486}	hg19_lincRNAsTranscripts_TCONS_l2_00030845 range=chrX:115803862-115812236 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030845 range=chrX:115803862-115812236 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	115803862	115804347	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_52025_PI429285431	0.91416126	A	1.599663	A	0.621789543282018	0	lncRNA	55555-1_{1..2342}	hg19_lincRNAsTranscripts_TCONS_l2_00017152 range=chr21:16741148-16772869 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017152 range=chr21:16741148-16772869 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 16741148	 16743489	-	NA	NA	NA	NA	LOC100652984	NA	chr21:16742841-16767376	inter
CUST_44738_PI429285431	5.9535313	P	6.406211	P	0.730684394192622	0	lncRNA	49290-1_{1..650}	"gi|341915343|ref|XR_108638.2| PREDICTED: Homo sapiens uncharacterized LOC100507672 (LOC100507672), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915343|ref|XR_108638.2| PREDICTED: Homo sapiens uncharacterized LOC100507672 (LOC100507672), misc_RNA"	NA	NA	NA	NA	NA	XR_108638.2	NA	NA	NA	NA	NA	Unknown
CUST_3324_PI429285431	1.2321866	A	2.656785	A	0.372523049810803	0	lncRNA	3303-1_{1..519}	"transcript_id ""ENST00000519500.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519500.1"" | genecode_v17"	chr8	135850312	135850830	+	ENSG00000253433.1	ENST00000519500.1	AC083843.3	AC083843.3-001	NA	NA	NA	inter
CUST_30706_PI429285431	3.0715413	P	3.1220806	P	0.965575315617026	0	lncRNA	32488-1_{1..448}	n336214|X94055|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324817|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324817|3.2160800|-0.0417099	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336214|X94055|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324817|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324817|3.2160800|-0.0417099	chr14	107034727	107035174	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10752_PI429285431	1.7534161	A	1.4322848	A	1.24930982044722	0	lncRNA	12287-2_{3001..4388}	lnc-AC114947.1.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AC114947.1.1-2:3	chr5	 43083002	 43084389	+	lnc-AC114947.1.1-2	lnc-AC114947.1.1-2:3	XLOC_004366	linc-ZNF131-1	NA	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60"	NA	inter
CUST_1781_PI429285431	0.90129066	A	1.5200558	A	0.651228101236915	0	lncRNA	1767-1_{1..504}	"transcript_id ""ENST00000510941.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510941.1"" | genecode_v17"	chr4	 59713333	 59713836	-	ENSG00000251339.1	ENST00000510941.1	RP11-506N2.1	RP11-506N2.1-001	NA	NA	NA	inter
CUST_46220_PI429285431	1.2788569	A	1.4818552	A	0.86874320883376	0	lncRNA	50460-2_{3001..3558}	"gi|397139501|ref|XR_159012.1| PREDICTED: Homo sapiens uncharacterized LOC440137 (FLJ31945), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|397139501|ref|XR_159012.1| PREDICTED: Homo sapiens uncharacterized LOC440137 (FLJ31945), misc_RNA"	Chr13	 50697973	 50698530	+	440137	XR_159012.2	NA	NA	NA	NA	NA	inter
CUST_8426_PI429285431	4.146393	P	3.7372546	P	1.32789253908821	0	lncRNA	9997-1_{1..3000}	lnc-PSCA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PSCA-1:1	chr8	143743944	143746943	+	lnc-PSCA-1	lnc-PSCA-1:1	ENSG00000247396	ENST00000501891	PSCA	"hg19_refFlat_JRK:range=chr8:143745769-1437474775'pad=0,hg19_refFlat_JRK:range=chr8:143745769-1437474775'pad=0 3'pad=0 strand=- repeatMasking=none,-105.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_JRK:range=chr8:143740267-1437474775'pad=0,hg19_refFlat_JRK:range=chr8:143740267-1437474775'pad=0 3'pad=0 strand=- repeatMasking=none,-105.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10chr8:143751726-143757183"	NA	inner
CUST_47516_PI429285431	4.6186795	P	4.1849074	P	1.3507606903891	0	lncRNA	51527-1_{1..2242}	"gi|240849187|ref|NR_027835.1| Homo sapiens apolipoprotein L, 3 (APOL3), transcript variant alpha/c, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|240849187|ref|NR_027835.1| Homo sapiens apolipoprotein L, 3 (APOL3), transcript variant alpha/c, non-coding RNA"	Chr22	 36536371	 36538612	-	80833	NR_027835.1	NA	NA	NA	NA	NA	inter
CUST_31049_PI429285431	0.9157198	A	0.90088195	A	1.01033788437545	0	lncRNA	32839-1_{1..239}	n337271|BC127900|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389518|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389518|-0.4460420|-0.1766469	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337271|BC127900|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389518|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389518|-0.4460420|-0.1766469	chr14	 91850734	 91850972	-	NA	NA	NA	NA	CCDC88C	NA	chr14:91840734-91860973	inner
CUST_19949_PI429285431	1.47342	A	0.889024	A	1.49941111305972	0	lncRNA	21604-1_{1..796}	lnc-TRRAP-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRRAP-1:3	chr7	 98645278	 98646073	+	lnc-TRRAP-1	lnc-TRRAP-1:3	ENSG00000242687.2	AC004893.11	SMURF1	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SMURF1:range=chr7:98628207-987414035'pad=0,hg19_refFlat_SMURF1:range=chr7:98628207-987414035'pad=0 3'pad=0 strand=- repeatMasking=none,-100.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80chr7:98635278-98655863"	NA	inner
CUST_41759_PI429285431	11.438646	P	11.845629	P	0.754198925395527	0	lncRNA	43312-1_{1..97}	ENST00000577219 ncrna:miRNA chromosome:GRCh37:14:101518340:101518436:1 gene:ENSG00000265250 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577219 ncrna:miRNA chromosome:GRCh37:14:101518340:101518436:1 gene:ENSG00000265250 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101518340	101518436	+	ENSG00000265250	ENST00000577219	NA	NA	NA	NA	NA	inter
CUST_35252_PI429285431	2.8907483	P	0.8973869	A	3.98163617572701	0	lncRNA	36653-1_{1..1825}	n342253|AK125741|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4743|NULL|6.2155700|-0.2995223	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342253|AK125741|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4743|NULL|6.2155700|-0.2995223	chr1	 35525386	 35527210	+	NA	NA	NA	NA	ZMYM1	NA	chr1:35519072-35581455	inner
CUST_17337_PI429285431	5.5654287	P	5.862328	P	0.814000000223342	0	lncRNA	19055-1_{1..267}	lnc-WWOX-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WWOX-3:1	chr16	 79796223	 79796489	+	lnc-WWOX-3	lnc-WWOX-3:1	XLOC_011798	linc-DYNLRB2-2	NA	NA	NA	inter
CUST_28997_PI429285431	0.88528776	A	0.88619834	A	0.99936903318366	0	lncRNA	30721-1_{1..767}	n326481|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033259|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033259|-0.1670960|-0.2732169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326481|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033259|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033259|-0.1670960|-0.2732169	chr1	113164314	113165080	-	NA	NA	NA	NA	ST7L	"hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-27.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10chr1:113154314-113162040"	NA	inner
CUST_28655_PI429285431	1.4070673	A	1.4705226	A	0.956969400646372	0	lncRNA	30347-1_{1..3000}	n326034|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047293|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047293|0.0159834|-0.3096696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326034|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047293|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047293|0.0159834|-0.3096696	chr10	 27260140	 27263139	-	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80"	NA	inter
CUST_25192_PI429285431	4.677048	P	4.8754025	P	0.871544056829201	0	lncRNA	26723-1_{1..641}	lnc-TTLL7-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTLL7-7:1	chr1	 82091340	 82091980	-	lnc-TTLL7-7	lnc-TTLL7-7:1	ENSG00000236676.1	RP5-837I24.4	NA	NA	NA	inter
LNCA_21_P0014163	0.8969188	A	0.8916979	A	1.00362540806625	0	lncRNA	XR_108653	XR_108653	XR_108653	NA	NA	LOC100505862	uncharacterized LOC100505862	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505862 (LOC100505862), miscRNA [XR_108653]"	chr6:44513987-44513928	hs|6p21.1	Agilent_HUMAN_G3V2	XR_108653	XR_108653	chr6	 44513928	 44513987	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49933_PI429285431	4.3304014	P	4.306303	P	1.01684402546764	0	lncRNA	53683-1_{1..803}	hg19_lincRNAsTranscripts_TCONS_l2_00026833 range=chr7:105222224-105223390 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026833 range=chr7:105222224-105223390 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	105222224	105223026	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19177_PI429285431	2.3845263	A	2.608042	A	0.856475747648323	0	lncRNA	20846-1_{1..821}	lnc-TIGD7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TIGD7-1:1	chr16	  3357573	  3358393	-	lnc-TIGD7-1	lnc-TIGD7-1:1	ENSG00000262899.1	LA16c-360H6.3	ZNF75A	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40chr16:3355433-3368393"	NA	inner
CUST_29123_PI429285431	1.7822778	A	2.3573928	A	0.671232744002911	0	lncRNA	30858-1_{1..815}	n326623|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021838|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021838|-0.7195580|-0.3167390	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326623|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021838|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021838|-0.7195580|-0.3167390	chr1	 47926721	 47927535	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51479_PI429285431	4.4280376	P	5.088848	P	0.632522892319641	0	lncRNA	55054-1_{1..2702}	hg19_lincRNAsTranscripts_TCONS_l2_00009702 range=chr16:34280783-34294714 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009702 range=chr16:34280783-34294714 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 34280783	 34283484	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48700_PI429285431	1.6362169	A	3.901679	P	0.207983055346317	0	lncRNA	52542-1_{1..547}	hg19_lincRNAsTranscripts_TCONS_l2_00013919 range=chr2:114298973-114320886 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013919 range=chr2:114298973-114320886 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	114298973	114299519	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3535_PI429285431	2.554141	A	1.5106896	A	2.06115271350076	0	lncRNA	3504-1_{1..708}	"transcript_id ""ENST00000602625.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602625.1"" | genecode_v17"	chr9	125086887	125087594	+	ENSG00000269979.1	ENST00000602625.1	RP11-498E2.7	RP11-498E2.7-001	MRRF	NA	chr9:125076887-125085743	inter
CUST_50329_PI429285431	9.432997	P	10.113238	P	0.624061017304601	0	lncRNA	54047-1_{1..952}	hg19_lincRNAsTranscripts_TCONS_l2_00029056 range=chr9:132094688-132109733 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029056 range=chr9:132094688-132109733 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132094688	132095639	+	NA	NA	NA	NA	C9orf106	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00chr9:132084688-132084882"	NA	inter
CUST_24329_PI429285431	0.8984451	A	1.0248886	A	0.916086986375109	0	lncRNA	25882-1_{1..666}	lnc-HNRNPAB-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HNRNPAB-3:1	chr5	177778919	177779584	+	lnc-HNRNPAB-3	lnc-HNRNPAB-3:1	ENSG00000253698.1	RP11-1259L22.1	COL23A1	NA	chr5:177768919-177789251	inner
CUST_30875_PI429285431	5.268175	P	5.717499	P	0.7323859398302	0	lncRNA	32663-1_{1..295}	n336883|AY743705|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332235|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332235|0.9614280|-0.1764376	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336883|AY743705|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332235|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332235|0.9614280|-0.1764376	chr17	  2206677	  2206971	+	NA	NA	NA	NA	SMG6	NA	chr17:2196677-2207069	inner
CUST_49629_PI429285431	2.367448	A	3.140267	P	0.585272744238963	0	lncRNA	53413-1_{1..525}	hg19_lincRNAsTranscripts_TCONS_l2_00025692 range=chr7:17029774-17061179 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025692 range=chr7:17029774-17061179 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 17029774	 17030298	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15934_PI429285431	0.91091466	A	0.9122112	A	0.999101710658168	0	lncRNA	17631-1_{1..258}	lnc-OXNAD1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OXNAD1-2:3	chr3	 16580325	 16580582	+	lnc-OXNAD1-2	lnc-OXNAD1-2:3	XLOC_002588	linc-PLCL2-1	NA	NA	NA	inter
CUST_31144_PI429285431	1.6463859	A	1.3101007	A	1.26250158579778	0	lncRNA	32939-1_{1..271}	n337473|EF100439|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394854|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394854|-1.2961400|-0.1820065	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337473|EF100439|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394854|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394854|-1.2961400|-0.1820065	chr6	144263761	144264031	-	NA	NA	NA	NA	PLAGL1	NA	chr6:144261437-144385735	inner
CUST_2646_PI429285431	0.89198256	A	0.8899954	A	1.00137834339461	0	lncRNA	2633-1_{1..708}	"transcript_id ""ENST00000414038.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414038.1"" | genecode_v17"	chr6	140175987	140176694	+	ENSG00000231426.1	ENST00000414038.1	RP5-899B16.1	RP5-899B16.1-002	NA	NA	NA	inter
CUST_1371_PI429285431	0.9150917	A	0.89900136	A	1.01121540008128	0	lncRNA	1359-1_{1..749}	"transcript_id ""ENST00000460597.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000460597.1"" | genecode_v17"	chr3	 69640492	 69641240	+	ENSG00000241667.1	ENST00000460597.1	RP11-444P10.1	RP11-444P10.1-001	NA	NA	NA	inter
CUST_42503_PI429285431	0.892218	A	0.88945055	A	1.00192009118368	0	lncRNA	45277-1_{1..85}	ENST00000516767 ncrna:snoRNA chromosome:GRCh37:18:5558188:5558272:-1 gene:ENSG00000252576 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516767 ncrna:snoRNA chromosome:GRCh37:18:5558188:5558272:-1 gene:ENSG00000252576 gene_biotype:snoRNA transcript_biotype:snoRNA	chr18	  5558188	  5558272	-	ENSG00000252576	ENST00000516767	NA	NA	NA	NA	NA	inter
CUST_17636_PI429285431	1.1741037	A	0.9263813	A	1.18733118060756	0	lncRNA	19364-1_{1..349}	lnc-NFIA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NFIA-1:1	chr1	 60881529	 60881877	+	lnc-NFIA-1	lnc-NFIA-1:1	XLOC_000226	linc-NFIA-1	NA	NA	NA	inter
CUST_30378_PI429285431	2.4844756	A	3.1663063	P	0.623373745640873	0	lncRNA	32154-1_{1..1218}	n335488|BC054032|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259409|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259409|9.8974000|-0.3091516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335488|BC054032|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259409|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259409|9.8974000|-0.3091516	chrX	105855272	105856489	+	NA	NA	NA	NA	CXorf57	NA	chrX:105845272-105886257	inner
CUST_26872_PI429285431	1.5734446	A	1.9099575	A	0.791953209476265	0	lncRNA	28389-1_{1..526}	n323947|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054804|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054804|-1.2062600|-0.2745547	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323947|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054804|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054804|-1.2062600|-0.2745547	chr9	134812276	134812801	+	NA	NA	NA	NA	MED27	NA	chr9:134802276-134826764	inner
CUST_24544_PI429285431	4.0148363	P	4.4663553	P	0.731272492584472	0	lncRNA	26094-1_{1..559}	lnc-AMFR-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AMFR-4:3	chr16	 56223414	 56223972	-	lnc-AMFR-4	lnc-AMFR-4:3	ENSG00000246379.2	RP11-461O7.1	GNAO1	NA	chr16:56225251-56233480	inter
CUST_5154_PI429285431	0.89581513	A	0.89392626	A	1.00131012237643	0	lncRNA	5095-1_{1..350}	"transcript_id ""ENST00000558818.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558818.1"" | genecode_v17"	chr15	 39804607	 39804956	-	ENSG00000259390.1	ENST00000558818.1	RP11-27M9.1	RP11-27M9.1-001	NA	NA	NA	inter
LNCA_21_P0010476	8.824208	P	8.820457	P	1.0026033779927	0	lncRNA	THC2660954	NA	NA	NA	NA	XLOC_014336	NA	NA	THC2660954	NA	"BROAD Institute lincRNA (XLOC_014336), lincRNA [TCONS_00029887]"	chr22:029712899-029712840	hs|22q12.2	Agilent_HUMAN_G3V2	THC2660954	THC2660954	chr22	 29712840	 29712899	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10206_PI429285431	0.8876853	A	0.8891729	A	0.998969405681679	0	lncRNA	11732-1_{1..541}	lnc-PGS1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PGS1-1:2	chr17	 76358754	 76359294	+	lnc-PGS1-1	lnc-PGS1-1:2	XLOC_012324	linc-PGS1-1	SOCS3	NA	chr17:76352859-76356158	inter
CUST_22153_PI429285431	3.1137805	A	3.3624172	P	0.841691410643363	0	lncRNA	23754-1_{1..555}	lnc-C17orf97-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf97-3:3	chr17	   181591	   182145	+	lnc-C17orf97-3	lnc-C17orf97-3:3	ENSG00000262061.1	RP11-1260E13.4	RPH3AL	NA	chr17:171591-191942	inner
CUST_11049_PI429285431	3.5281873	P	3.460433	P	1.04808396505401	0	lncRNA	12596-1_{1..557}	lnc-AC099489.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC099489.1-1:1	chr16	 11511488	 11512044	-	lnc-AC099489.1-1	lnc-AC099489.1-1:1	XLOC_011876	linc-PRM1-2	NA	NA	NA	inter
CUST_49721_PI429285431	1.17149	A	0.89080596	A	1.21477071974266	0	lncRNA	53496-2_{3001..4450}	hg19_lincRNAsTranscripts_TCONS_00040336_HOTTIP range=chr7:27238594-27244488 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00040336_HOTTIP range=chr7:27238594-27244488 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 27241594	 27243043	+	NA	NA	NA	NA	HOXA13	NA	chr7:27236499-27239725	inter
CUST_47743_PI429285431	0.8921176	A	0.8914964	A	1.00043067574274	0	lncRNA	51691-3_{6001..6126}	"gi|385137105|ref|NR_047643.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 73, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137105|ref|NR_047643.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 73, non-coding RNA"	ChrY	 15366259	 15366384	-	7404	NR_047643.1	NA	NA	NA	NA	NA	inter
CUST_39438_PI429285431	7.487774	P	6.866575	P	1.53815298375256	0	lncRNA	40386-1_{1..575}	n386746|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tpo.1||2.0635600|-0.1953088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386746|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tpo.1||2.0635600|-0.1953088	chr14	 35409127	 35409701	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008088	0.91176504	A	1.0052297	A	0.937269174273981	0	lncRNA	TCONS_00021853	NA	NA	NA	NA	XLOC_010447	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010447), lincRNA [TCONS_00021853]"	chr13:80240771-80240830	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00021853	TCONS_00021853	chr13	 80240771	 80240830	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37029_PI429285431	8.70813	P	8.852531	P	0.904754949464923	0	lncRNA	38167-1_{1..2196}	n345484|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1033|NULL|-1.3099700|-0.2361664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345484|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1033|NULL|-1.3099700|-0.2361664	chr1	223187600	223189795	-	NA	NA	NA	NA	DISP1	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70chr1:223177600-223179337"	NA	inter
CUST_42835_PI429285431	0.9144709	A	1.1672356	A	0.839286511502619	0	lncRNA	45871-1_{1..119}	ENST00000364921 ncrna:snoRNA chromosome:GRCh37:1:178722789:178722907:-1 gene:ENSG00000201791 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364921 ncrna:snoRNA chromosome:GRCh37:1:178722789:178722907:-1 gene:ENSG00000201791 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	178722789	178722907	-	ENSG00000201791	ENST00000364921	NA	NA	RALGPS2	NA	chr1:178712789-178732907	inner
CUST_42408_PI429285431	10.095166	P	10.441395	P	0.786637571907348	0	lncRNA	45112-1_{1..132}	ENST00000362423 ncrna:snoRNA chromosome:GRCh37:17:37009116:37009247:-1 gene:ENSG00000199293 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362423 ncrna:snoRNA chromosome:GRCh37:17:37009116:37009247:-1 gene:ENSG00000199293 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 37009116	 37009247	-	ENSG00000199293	ENST00000362423	NA	NA	RPL23	NA	chr17:37006321-37010053	inter
CUST_31529_PI429285431	5.9760523	P	5.8461967	P	1.09418417838979	0	lncRNA	33286-1_{1..687}	n338015|BC031326|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|402|NULL|-1.3698400|-0.2615833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338015|BC031326|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|402|NULL|-1.3698400|-0.2615833	chr1	 75593517	 75594203	-	NA	NA	NA	NA	LHX8	NA	chr1:75594119-75608743	inner
LNCA_21_P0003148	0.90352184	A	0.9203351	A	0.988413581799184	0	lncRNA	TCONS_00007222	NA	NA	NA	NA	XLOC_003202	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003202), lincRNA [TCONS_00007222]"	chr3:106529569-106529510	hs|3q13.12	Agilent_HUMAN_G3V2	TCONS_00007222	TCONS_00007222	chr3	106529510	106529569	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1796_PI429285431	8.474559	P	8.792706	P	0.802099434163288	0	lncRNA	1783-1_{1..583}	"transcript_id ""ENST00000507156.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507156.1"" | genecode_v17"	chr4	 72687022	 72687604	-	ENSG00000248567.1	ENST00000507156.1	RP11-545L5.1	RP11-545L5.1-001	NA	NA	NA	inter
CUST_33056_PI429285431	0.89789075	A	0.9083649	A	0.992766163520732	0	lncRNA	34667-1_{1..2492}	n339745|AK091265|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2191|NULL|-0.8854460|-0.2569740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339745|AK091265|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2191|NULL|-0.8854460|-0.2569740	chr3	193558616	193561107	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008826	0.9114451	A	0.92457485	A	0.990940438189054	0	lncRNA	TCONS_00023943	NA	NA	NA	NA	XLOC_011259	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011259), lincRNA [TCONS_00023943]"	chr15:53375254-53392972	hs|15q21.3	Agilent_HUMAN_G3V2	TCONS_00023943	TCONS_00023943	chr15	 53375254	 53392972	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00804979	5.189179	P	5.33815	P	0.901893507403354	0	lncRNA	XR_132576	XR_132576	XR_132576	NA	NA	LOC100652906	NA	NA	THC2517403	NA	"PREDICTED: Homo sapiens hypothetical LOC100652906 (LOC100652906), miscRNA [XR_132576]"	chr11:8701359-8701300	hs|11p15.4	Agilent_HUMAN_G3V2	XR_132576	XR_132576	chr11	  8701300	  8701359	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34305_PI429285431	0.90107983	A	1.2210138	A	0.801106542202025	0	lncRNA	35800-1_{1..1093}	n341165|BC043577|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3631|NULL|-0.4831710|-0.1710349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341165|BC043577|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3631|NULL|-0.4831710|-0.1710349	chr11	133653565	133654657	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28508_PI429285431	5.284227	P	5.446132	P	0.893844019137799	0	lncRNA	30177-1_{1..475}	n325853|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051008|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051008|-1.1549200|-0.2551080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325853|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051008|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051008|-1.1549200|-0.2551080	chr10	130966504	130966978	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35540_PI429285431	3.5587654	P	1.5934241	A	3.9050507561194	0	lncRNA	36956-1_{1..3000}	n342663|BC028585|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5165|NULL|0.9446330|-0.4096806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n342663|BC028585|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5165|NULL|0.9446330|-0.4096806	chr5	 82348664	 82351663	-	NA	NA	NA	NA	XRCC4	NA	chr5:82373317-82383191	inner
LNCA_21_P0003744	0.9158463	A	0.9239518	A	0.994397448684724	0	lncRNA	TCONS_00008495	NA	NA	NA	NA	XLOC_003967	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003967), lincRNA [TCONS_00008495]"	chr4:63316331-63316272	hs|4q13.1	Agilent_HUMAN_G3V2	TCONS_00008495	TCONS_00008495	chr4	 63316272	 63316331	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15705_PI429285431	0.8955456	A	0.9018957	A	0.995608118730388	0	lncRNA	17393-1_{1..555}	lnc-GALR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GALR1-1:1	chr18	 75042101	 75042655	+	lnc-GALR1-1	lnc-GALR1-1:1	XLOC_012731	linc-SALL3-3	NA	NA	NA	inter
CUST_11035_PI429285431	1.3656114	A	2.747161	A	0.383806327135169	0	lncRNA	12581-1_{1..454}	lnc-NAPB-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAPB-1:6	chr20	 23338358	 23338811	-	lnc-NAPB-1	lnc-NAPB-1:6	XLOC_013693	linc-CD93-1	GZF1	NA	chr20:23345021-23348492	inter
CUST_22997_PI429285431	2.5848107	A	3.0682914	A	0.715249902004869	0	lncRNA	24571-1_{1..573}	lnc-PELI2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PELI2-2:1	chr14	 56792898	 56793470	+	lnc-PELI2-2	lnc-PELI2-2:1	ENSG00000259719.1	RP11-930O11.1	NA	NA	NA	inter
CUST_43408_PI429285431	9.890729	P	9.993389	P	0.931314276843663	0	lncRNA	48220-1_{1..2032}	"gi|111154072|ref|NR_003109.1| Homo sapiens tRNA selenocysteine 1 associated protein 1 (TRNAU1AP), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|111154072|ref|NR_003109.1| Homo sapiens tRNA selenocysteine 1 associated protein 1 (TRNAU1AP), transcript variant 2, non-coding RNA"	Chr1	 28879529	 28881560	+	54952	NR_003109.1	NA	NA	NA	NA	NA	inter
CUST_7116_PI429285431	0.9256567	A	0.9575848	A	0.978112218687411	0	lncRNA	7052-1_{1..961}	"transcript_id ""ENST00000441841.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441841.1"" | genecode_v17"	chrX	134083579	134084539	+	ENSG00000236091.1	ENST00000441841.1	RP3-473B4.3	RP3-473B4.3-001	NA	NA	NA	inter
CUST_6244_PI429285431	2.464483	A	2.6958735	A	0.851813500123055	0	lncRNA	6169-1_{1..346}	"transcript_id ""ENST00000580057.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580057.1"" | genecode_v17"	chr18	 65769353	 65769698	+	ENSG00000264869.1	ENST00000580057.1	RP11-526H11.1	RP11-526H11.1-001	NA	NA	NA	inter
CUST_44109_PI429285431	4.807315	P	5.3642397	P	0.679749598866296	0	lncRNA	48775-1_{1..2618}	"gi|322812173|ref|NR_037807.1| Homo sapiens interleukin 17 receptor C (IL17RC), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|322812173|ref|NR_037807.1| Homo sapiens interleukin 17 receptor C (IL17RC), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NR_037807.1	NA	NA	NA	NA	NA	Unknown
CUST_24291_PI429285431	0.9787959	A	0.910576	A	1.04842226707403	0	lncRNA	25842-1_{1..484}	lnc-LEPRE1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LEPRE1-1:1	chr1	 43242335	 43242818	-	lnc-LEPRE1-1	lnc-LEPRE1-1:1	ENSG00000228452.1	RP5-994D16.9	C1orf50	NA	chr1:43232916-43241418	inter
LNCA_21_P0003393	2.935349	A	2.8402615	A	1.06813018858336	0	lncRNA	ENST00000442020	NA	NA	NA	NA	XLOC_003660	NA	ENST00000442020	THC2663053	NA	"BROAD Institute lincRNA (XLOC_003660), lincRNA [TCONS_00007602]"	chr4:118791041-118791100	hs|4q26	Agilent_HUMAN_G3V2	ENST00000442020	ENST00000442020	chr4	118791041	118791100	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25569_PI429285431	1.4267406	A	2.246791	A	0.566422154560717	0	lncRNA	27098-1_{1..1530}	lnc-SRP9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SRP9-1:1	chr1	225939022	225940551	+	lnc-SRP9-1	lnc-SRP9-1:1	ENSG00000227496.1	RP11-145A3.1	NA	NA	NA	inter
CUST_51347_PI429285431	1.0530512	A	1.6144345	A	0.677652098625446	0	lncRNA	54946-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008761 range=chr15:78996146-79029199 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008761 range=chr15:78996146-79029199 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 78996146	 78999145	+	NA	NA	NA	NA	NA	"hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20"	NA	inter
CUST_5702_PI429285431	8.673145	P	8.434234	P	1.18010154050967	0	lncRNA	5626-1_{1..648}	"transcript_id ""ENST00000576489.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000576489.1"" | genecode_v17"	chr17	  1615874	  1616521	-	ENSG00000186594.6	ENST00000576489.1	MIR22HG	MIR22HG-009	WDR81	NA	chr17:1619817-1629504	inter
CUST_43005_PI429285431	7.028577	P	7.0826383	P	0.963220965966764	0	lncRNA	46174-1_{1..135}	ENST00000384762 ncrna:snoRNA chromosome:GRCh37:16:58582403:58582537:-1 gene:ENSG00000207493 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384762 ncrna:snoRNA chromosome:GRCh37:16:58582403:58582537:-1 gene:ENSG00000207493 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 58582403	 58582537	-	ENSG00000207493	ENST00000384762	NA	NA	CNOT1	NA	chr16:58572403-58592537	inner
CUST_19062_PI429285431	0.9262793	A	0.90000105	A	1.01838159425293	0	lncRNA	20753-1_{1..359}	lnc-TATDN1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TATDN1-1:4	chr8	125486527	125486885	-	lnc-TATDN1-1	lnc-TATDN1-1:4	ENSG00000245149	RP11-383J24.5	RNF139	NA	chr8:125487008-125496595	inter
CUST_2717_PI429285431	5.846419	P	5.996577	P	0.901151765539137	0	lncRNA	2702-1_{1..557}	"transcript_id ""ENST00000436492.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436492.1"" | genecode_v17"	chr6	169116745	169117301	+	ENSG00000235815.1	ENST00000436492.1	RP1-125N5.2	RP1-125N5.2-001	NA	NA	NA	inter
CUST_19681_PI429285431	9.121873	P	8.825769	P	1.22782419126404	0	lncRNA	21338-1_{1..181}	lnc-SEC22C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC22C-1:1	chr3	 42574056	 42574236	-	lnc-SEC22C-1	lnc-SEC22C-1:1	ENSG00000232354.1	VIPR1-AS1	VIPR1	"hg19_refFlat_VIPR1:range=chr3:42555286-425777735'pad=0,hg19_refFlat_VIPR1:range=chr3:42555286-425777735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_VIPR1:range=chr3:42544263-425777735'pad=0,hg19_refFlat_VIPR1:range=chr3:42544263-425777735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_VIPR1:range=chr3:42544228-425777735'pad=0,hg19_refFlat_VIPR1:range=chr3:42544228-425777735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20chr3:42564056-42579065"	NA	inner
CUST_13745_PI429285431	1.9692576	A	1.1819371	A	1.72586605398096	0	lncRNA	15388-1_{1..433}	lnc-ARRDC3-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARRDC3-1:12	chr5	 90608112	 90608544	-	lnc-ARRDC3-1	lnc-ARRDC3-1:12	XLOC_004924	linc-LYSMD3-2	NA	NA	NA	inter
CUST_45659_PI429285431	0.90353745	A	0.9179851	A	0.990035628751481	0	lncRNA	50035-1_{1..1089}	"gi|84872061|ref|NR_002779.1| Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 9 pseudogene 1 (NUDT9P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|84872061|ref|NR_002779.1| Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 9 pseudogene 1 (NUDT9P1), non-coding RNA"	NA	NA	NA	NA	NA	NR_002779.1	NA	NA	NA	NA	NA	Unknown
CUST_44559_PI429285431	7.66895	P	6.2909765	P	2.59903038444197	0	lncRNA	49143-1_{1..3000}	"gi|375268725|ref|NR_046318.1| Homo sapiens ectodermal-neural cortex 1 (with BTB-like domain) (ENC1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|375268725|ref|NR_046318.1| Homo sapiens ectodermal-neural cortex 1 (with BTB-like domain) (ENC1), transcript variant 5, non-coding RNA"	Chr5	 73923231	 73926230	-	8507	NR_046318.1	NA	NA	NA	NA	NA	inter
CUST_44486_PI429285431	3.1607234	A	3.153637	A	1.0049240014263	0	lncRNA	49089-1_{1..3000}	"gi|299829234|ref|NR_033898.1| Homo sapiens uncharacterized LOC285577 (LOC285577), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|299829234|ref|NR_033898.1| Homo sapiens uncharacterized LOC285577 (LOC285577), non-coding RNA"	Chr5	  3417266	  3420265	-	285577	NR_033898.1	NA	NA	NA	NA	NA	inter
CUST_403_PI429285431	1.5132215	A	1.6982535	A	0.879629564897961	0	lncRNA	395-1_{1..681}	"transcript_id ""ENST00000443548.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443548.1"" | genecode_v17"	chr1	143356065	143356745	-	ENSG00000185044.9	ENST00000443548.1	RP11-435B5.4	RP11-435B5.4-003	NA	NA	NA	inter
CUST_37797_PI429285431	4.6649747	P	5.2844563	P	0.650904773688835	0	lncRNA	38889-1_{1..2666}	n346304|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1854|NULL|-1.7093600|-0.1665500	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346304|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1854|NULL|-1.7093600|-0.1665500	chr7	150101539	150104204	-	NA	NA	NA	NA	ZNF775	NA	chr7:150091539-150095719	inter
CUST_49659_PI429285431	4.9892983	P	4.5107656	P	1.39332585664617	0	lncRNA	53440-1_{1..1376}	hg19_lincRNAsTranscripts_TCONS_l2_00026191 range=chr7:128171398-128266588 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026191 range=chr7:128171398-128266588 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	128171398	128172773	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35951_PI429285431	0.9022037	A	0.90230244	A	0.999931560989447	0	lncRNA	37308-5_{12001..15000}	n344583|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_131|NULL|-1.2937000|-0.1534478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344583|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_131|NULL|-1.2937000|-0.1534478	chrX	114969339	114972338	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14167_PI429285431	4.383425	P	4.225591	P	1.11561095003065	0	lncRNA	15818-1_{1..319}	lnc-SPAG16-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPAG16-4:4	chr2	213683885	213684203	+	lnc-SPAG16-4	lnc-SPAG16-4:4	XLOC_001833	linc-SPAG16-3	NA	NA	NA	inter
CUST_31006_PI429285431	0.88624257	A	0.88791746	A	0.998839728355015	0	lncRNA	32794-1_{1..989}	n337201|AY011601|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000385935|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000385935|4.4287300|-0.0666509	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337201|AY011601|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000385935|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000385935|4.4287300|-0.0666509	chr6	 88853848	 88854836	-	NA	NA	NA	NA	CNR1	NA	chr6:88849583-88864837	inner
CUST_37271_PI429285431	3.8220372	P	4.1453776	P	0.799217234955149	0	lncRNA	38379-1_{1..607}	n345710|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1259|NULL|-1.3383300|-0.1734411	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345710|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1259|NULL|-1.3383300|-0.1734411	chr7	 38398041	 38398647	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36858_PI429285431	0.91095006	A	1.6556576	A	0.596788838989397	0	lncRNA	38018-1_{1..611}	n345326|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_875|NULL|-1.5859100|-0.1477241	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345326|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_875|NULL|-1.5859100|-0.1477241	chr16	  4357012	  4357622	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5843_PI429285431	0.90443146	A	1.0929626	A	0.877498679805195	0	lncRNA	5772-1_{1..632}	"transcript_id ""ENST00000582263.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582263.1"" | genecode_v17"	chr17	 38084120	 38084751	+	ENSG00000264968.1	ENST00000582263.1	RP11-387H17.4	RP11-387H17.4-001	LRRC3C	NA	chr17:38097727-38100987	inter
CUST_24087_PI429285431	6.6624002	P	6.1037483	P	1.47289225681728	0	lncRNA	25637-1_{1..939}	lnc-KHDRBS3-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-KHDRBS3-7:1	chr8	135612499	135613437	+	lnc-KHDRBS3-7	lnc-KHDRBS3-7:1	ENSG00000248492.1	ZFAT-AS1	ZFAT	"hg19_refFlat_ZFAT:range=chr8:135490725-1356699635'pad=0,hg19_refFlat_ZFAT:range=chr8:135490725-1356699635'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZFAT:range=chr8:135490725-1357251065'pad=0,hg19_refFlat_ZFAT:range=chr8:135490725-1357251065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60chr8:135602499-135622932"	NA	inner
CUST_39494_PI429285431	4.244336	P	4.4442935	P	0.870576209009778	0	lncRNA	40441-1_{1..1804}	n387222|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ago.1||4.2667000|-0.1390165	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n387222|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ago.1||4.2667000|-0.1390165	chr22	 18761201	 18763004	-	NA	NA	NA	NA	LOC100132900	NA	chr22:18781949-18789362	inter
CUST_607_PI429285431	0.9039778	A	0.91078824	A	0.99529048741171	0	lncRNA	599-1_{1..889}	"transcript_id ""ENST00000418557.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418557.1"" | genecode_v17"	chr1	235093089	235093977	-	ENSG00000238005.1	ENST00000418557.1	RP11-443B7.1	RP11-443B7.1-001	NA	NA	NA	inter
CUST_26800_PI429285431	8.917686	P	8.832832	P	1.06058040574273	0	lncRNA	28310-1_{1..539}	n323866|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056978|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056978|-1.0469800|-0.2760088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323866|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056978|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056978|-1.0469800|-0.2760088	chrX	 64724985	 64725523	+	NA	NA	NA	NA	LAS1L	NA	chrX:64732462-64736374	inner
LNCA_21_P0006292	1.0926216	A	0.89200085	A	1.14919271306234	0	lncRNA	TCONS_00016402	NA	NA	NA	NA	XLOC_007773	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007773), lincRNA [TCONS_00016402]"	chr9:93739341-93736517	hs|9q22.2	Agilent_HUMAN_G3V2	TCONS_00016402	TCONS_00016402	chr9	 93736517	 93739341	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4481_PI429285431	0.8843506	A	0.88481337	A	0.999679283719717	0	lncRNA	4430-1_{1..540}	"transcript_id ""ENST00000545535.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000545535.1"" | genecode_v17"	chr12	127175027	127175566	+	ENSG00000255998.1	ENST00000545535.1	RP11-407A16.7	RP11-407A16.7-002	NA	NA	NA	inter
CUST_2851_PI429285431	1.1136792	A	1.4491048	A	0.792550297056203	0	lncRNA	2834-1_{1..812}	"transcript_id ""ENST00000593670.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593670.1"" | genecode_v17"	chr7	 63348694	 63349505	-	ENSG00000236299.3	ENST00000593670.1	RP11-340I6.7	RP11-340I6.7-007	NA	NA	NA	inter
CUST_37631_PI429285431	5.3993297	P	5.1868806	P	1.15865343006761	0	lncRNA	38726-2_{3001..5874}	n346108|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1658|NULL|-1.4970600|-0.2329729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346108|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1658|NULL|-1.4970600|-0.2329729	chr6	  1149342	  1152215	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38988_PI429285431	6.031972	P	3.55797	P	5.55582824506847	0	lncRNA	39970-1_{1..3000}	n385229|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003uhq.1||-1.1787300|-0.4902735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385229|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003uhq.1||-1.1787300|-0.4902735	chr7	 81575759	 81578758	-	NA	NA	NA	NA	CACNA2D1	NA	chr7:81579418-81588977	inter
CUST_77_PI429201921	0.885651	A	0.8843279	A	1.00091752370218	0	lncRNA	79-1_{1..2359}	TC0Y000288.hg.1	TCONS_00017619-XLOC_008307 // Rinn lincRNAs // linc-ZBED1-5 chrY:-:2481028-2483388 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:2481028-2483388	NA	Affy_HUMAN_HTA2.0	TCONS_00017619-XLOC_008307	linc-ZBED1-5	chrY	  2481028	  2483388	-	NA	NA	NA	NA	MBD3L5	NA	chr19:7030594-7031442	Unknown
CUST_16438_PI429285431	3.268013	P	3.418292	P	0.90107618838107	0	lncRNA	18137-1_{1..447}	lnc-ZNF680-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF680-1:1	chr7	 63762711	 63763157	-	lnc-ZNF680-1	lnc-ZNF680-1:1	XLOC_006471	linc-ZNF479-3	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70"	NA	inter
CUST_32067_PI429285431	1.1601063	A	1.1136792	A	1.03270421525388	0	lncRNA	33777-1_{1..3000}	n338628|AK055410|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1040|NULL|-0.9936090|-0.2437467	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338628|AK055410|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1040|NULL|-0.9936090|-0.2437467	chr2	  2952872	  2955871	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34195_PI429285431	7.0082316	P	6.9628963	P	1.03192298297555	0	lncRNA	35710-1_{1..2037}	n341049|BX647603|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3515|NULL|-1.2937000|-0.3776776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n341049|BX647603|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3515|NULL|-1.2937000|-0.3776776	chr11	 65191801	 65193837	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43988_PI429285431	6.0632553	P	5.8841896	P	1.13215045880796	0	lncRNA	48687-1_{1..2023}	"gi|301129202|ref|NR_034169.1| Homo sapiens family with sequence similarity 133, member D, pseudogene (FAM133DP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301129202|ref|NR_034169.1| Homo sapiens family with sequence similarity 133, member D, pseudogene (FAM133DP), non-coding RNA"	Chr2	158234999	158237021	-	728066	NR_034169.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004429	0.89828575	A	0.8927858	A	1.00381955079848	0	lncRNA	TCONS_00010434	NA	NA	NA	NA	XLOC_004950	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004950), lincRNA [TCONS_00010434]"	chr5:105540938-105539431	hs|5q21.3	Agilent_HUMAN_G3V2	TCONS_00010434	TCONS_00010434	chr5	105539431	105540938	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17219_PI429285431	1.485508	A	2.005379	A	0.697434192153382	0	lncRNA	18933-1_{1..1137}	lnc-AC008993.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AC008993.1-1:1	chr19	    70928	    72064	-	lnc-AC008993.1-1	lnc-AC008993.1-1:1	XLOC_013188	linc-MZF1-2	NA	NA	NA	inter
CUST_34325_PI429285431	1.0921543	A	0.9058219	A	1.13786736472922	0	lncRNA	35819-1_{1..467}	n341189|AJ012492|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3655|NULL|-1.1025600|-0.5149642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341189|AJ012492|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3655|NULL|-1.1025600|-0.5149642	chr7	 13934332	 13934798	+	NA	NA	NA	NA	ETV1	NA	chr7:13930854-13944794	inner
CUST_28584_PI429285431	3.376175	P	3.8594182	P	0.715367657892315	0	lncRNA	30264-1_{1..380}	n325945|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048821|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048821|-0.9949280|-0.3163086	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325945|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048821|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048821|-0.9949280|-0.3163086	chr10	 76709494	 76709873	-	NA	NA	NA	NA	KAT6B	NA	chr10:76699494-76723110	inner
CUST_44062_PI429285431	0.8918731	A	0.88976735	A	1.00146066040222	0	lncRNA	48735-1_{1..1993}	"gi|373838714|ref|NR_046086.1| Homo sapiens uncharacterized LOC100129175 (LOC100129175), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|373838714|ref|NR_046086.1| Homo sapiens uncharacterized LOC100129175 (LOC100129175), non-coding RNA"	Chr2	219866937	219868929	+	100129175	NR_046086.1	NA	NA	NA	"hg19_refFlat_CCDC108:range=chr2:219867659-2199037705'pad=0,hg19_refFlat_CCDC108:range=chr2:219867659-2199037705'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00"	NA	inter
CUST_15380_PI429285431	4.384967	P	4.486829	P	0.931829558556222	0	lncRNA	17063-1_{1..263}	lnc-DHX34-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX34-1:1	chr19	 47930622	 47930884	+	lnc-DHX34-1	lnc-DHX34-1:1	XLOC_013103	linc-GLTSCR1-2	SLC8A2	NA	chr19:47931279-47940655	inter
CUST_44721_PI429285431	5.1372623	P	5.5165806	P	0.76880077736964	0	lncRNA	49276-1_{1..3000}	"gi|323276625|ref|NR_037846.1| Homo sapiens MSH5-SAPCD1 readthrough (non-protein coding) (MSH5-SAPCD1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|323276625|ref|NR_037846.1| Homo sapiens MSH5-SAPCD1 readthrough (non-protein coding) (MSH5-SAPCD1), non-coding RNA"	Chr6	 31707725	 31710724	+	100532732	NR_037846.1	NA	NA	NA	NA	NA	inter
CUST_22781_PI429285431	4.9361525	P	1.4632292	A	11.1033514335409	0	lncRNA	24361-1_{1..581}	lnc-GPR137C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR137C-1:1	chr14	 53108240	 53108820	+	lnc-GPR137C-1	lnc-GPR137C-1:1	ENSG00000258757.1	RP11-841O20.2	GPR137C	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-17.90chr14:53098240-53104431"	NA	inter
CUST_4117_PI429285431	5.83027	P	5.6406865	P	1.14043442970811	0	lncRNA	4077-2_{3001..3994}	"transcript_id ""ENST00000525716.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525716.2"" | genecode_v17"	chr11	130739149	130740142	-	ENSG00000255455.2	ENST00000525716.2	RP11-890B15.3	RP11-890B15.3-002	SNX19	NA	chr11:130745766-130750142	inter
LNCA_33_P3378962	0.90436363	A	0.89814997	A	1.0043162692824	0	lncRNA	ENST00000419926	XR_112910	XR_112910	NA	Hs.126980	NA	NA	ENST00000419926	THC2612750	NA	"PREDICTED: Homo sapiens hypothetical LOC644135 (LOC644135), miscRNA [XR_112910]"	chr6:136391426-136391367	hs|6q23.3	Agilent_HUMAN_G3V2	ENST00000419926	ENST00000419926	chr6	136391367	136391426	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29643_PI429285431	3.950227	P	4.192133	P	0.845627383140816	0	lncRNA	31404-1_{1..467}	n333221|AF487423|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000080568|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000080568|-1.0580000|-0.3135748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333221|AF487423|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000080568|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000080568|-1.0580000|-0.3135748	chr3	168849201	168849667	-	NA	NA	NA	NA	MECOM	NA	chr3:168839201-168859668	inner
CUST_50851_PI429285431	1.479634	A	1.8352828	A	0.781518104541143	0	lncRNA	54495-1_{1..302}	hg19_lincRNAsTranscripts_TCONS_l2_00004688 range=chr11:82843319-82859757 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004688 range=chr11:82843319-82859757 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 82843319	 82843620	+	NA	NA	NA	NA	PCF11	NA	chr11:82868137-82869757	inter
CUST_46371_PI429285431	2.29143	A	3.0171962	P	0.604675822416923	0	lncRNA	50590-2_{3001..6000}	"gi|258613852|ref|NR_028457.1| Homo sapiens ataxin 3 (ATXN3), transcript variant k, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|258613852|ref|NR_028457.1| Homo sapiens ataxin 3 (ATXN3), transcript variant k, non-coding RNA"	Chr14	 92527896	 92530895	-	4287	NR_028457.1	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
LNCA_21_P0003657	0.9068406	A	0.9002252	A	1.00459597510274	0	lncRNA	TCONS_00008271	NA	NA	NA	NA	XLOC_003712	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003712), lincRNA [TCONS_00008271]"	chr4:140497521-140499610	hs|4q31.1	Agilent_HUMAN_G3V2	TCONS_00008271	TCONS_00008271	chr4	140497521	140499610	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5701_PI429285431	5.108179	P	5.97858	P	0.546994791191919	0	lncRNA	5625-1_{1..899}	"transcript_id ""ENST00000573127.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000573127.1"" | genecode_v17"	chr17	  1615655	  1616553	-	ENSG00000186594.6	ENST00000573127.1	MIR22HG	MIR22HG-004	WDR81	NA	chr17:1619817-1629505	inter
CUST_20292_PI429285431	4.274073	P	4.727495	P	0.730308536856852	0	lncRNA	21936-1_{1..525}	lnc-CDK17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK17-1:1	chr12	 96617323	 96617847	-	lnc-CDK17-1	lnc-CDK17-1:1	ENSG00000258177.1	RP11-394J1.2	ELK3	"hg19_refFlat_ELK3:range=chr12:96617345-966609585'pad=0,hg19_refFlat_ELK3:range=chr12:96617345-966609585'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30chr12:96607323-96627751"	NA	inner
LNCA_21_P0001264	0.9083735	A	0.90151024	A	1.00476858299424	0	lncRNA	TCONS_00000841	NA	NA	NA	NA	XLOC_000056	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000056), lincRNA [TCONS_00000841]"	chr1:14001344-14001403	hs|1p36.21	Agilent_HUMAN_G3V2	TCONS_00000841	TCONS_00000841	chr1	 14001344	 14001403	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46694_PI429285431	1.3810165	A	2.41782	A	0.487406197316434	0	lncRNA	50855-1_{1..3000}	"gi|397139912|ref|XR_109338.2| PREDICTED: Homo sapiens uncharacterized LOC100289580 (LOC100289580), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139912|ref|XR_109338.2| PREDICTED: Homo sapiens uncharacterized LOC100289580 (LOC100289580), misc_RNA"	NA	NA	NA	NA	NA	XR_109338.2	NA	NA	NA	"hg19_refFlat_PIEZO1:range=chr16:88782013-888513725'pad=0,hg19_refFlat_PIEZO1:range=chr16:88782013-888513725'pad=0 3'pad=0 strand=- repeatMasking=none,-105.20"	NA	Unknown
CUST_23360_PI429285431	1.0336334	A	0.9253257	A	1.07796302997837	0	lncRNA	24930-1_{1..3000}	lnc-SLAIN1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLAIN1-4:1	chr13	 79189810	 79192809	+	lnc-SLAIN1-4	lnc-SLAIN1-4:1	ENSG00000234377.2	POU4F1-AS1	RNF219	"hg19_refFlat_RNF219:range=chr13:79189715-792332555'pad=0,hg19_refFlat_RNF219:range=chr13:79189715-792332555'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10chr13:79188421-79203239"	NA	inter
LNCA_21_P0007597	4.9779105	P	4.584257	P	1.31371606684529	0	lncRNA	TCONS_00020499	NA	NA	NA	NA	XLOC_009820	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009820), lincRNA [TCONS_00020499]"	chr12:85818559-85818618	hs|12q21.31	Agilent_HUMAN_G3V2	TCONS_00020499	TCONS_00020499	chr12	 85818559	 85818618	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36199_PI429285431	1.2354484	A	0.9922855	A	1.18358465710195	0	lncRNA	37458-1_{1..2730}	n344747|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_296|NULL|-1.3801100|-0.3117524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n344747|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_296|NULL|-1.3801100|-0.3117524	chr18	 39062408	 39065137	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40572_PI429285431	5.898603	P	5.02025	P	1.83827550294007	0	lncRNA	41326-1_{1..2076}	n410013|NR_036441|lncRNA|Homosapiens||RefGeneNoncode|NR_036441||3.9459000|-0.2601862	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410013|NR_036441|lncRNA|Homosapiens||RefGeneNoncode|NR_036441||3.9459000|-0.2601862	chr2	 58273776	 58275851	+	NA	NA	NA	NA	VRK2	"hg19_refFlat_FANCL:range=chr2:58386900-584684485'pad=0,hg19_refFlat_FANCL:range=chr2:58386900-584684485'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10chr2:58273777-58387055"	NA	inner
CUST_50592_PI429285431	1.0492382	A	1.4733092	A	0.745318512801649	0	lncRNA	54282-2_{3001..5012}	hg19_lincRNAsTranscripts_TCONS_l2_00003632 range=chr10:81421262-81588870 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003632 range=chr10:81421262-81588870 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 81424262	 81426273	-	NA	NA	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00"	NA	inter
CUST_33936_PI429285431	0.9212101	A	0.9425366	A	0.985326319988108	0	lncRNA	35477-1_{1..983}	n340734|L08438|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3197|NULL|-1.2479200|-0.4737542	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340734|L08438|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3197|NULL|-1.2479200|-0.4737542	chr5	170507600	170508582	+	NA	NA	NA	NA	RANBP17	NA	chr5:170497600-170518562	inner
CUST_44389_PI429285431	1.035288	A	1.4449058	A	0.752822785744277	0	lncRNA	49008-1_{1..531}	"gi|397139069|ref|XR_158969.1| PREDICTED: Homo sapiens uncharacterized LOC100996628 (LOC100996628), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139069|ref|XR_158969.1| PREDICTED: Homo sapiens uncharacterized LOC100996628 (LOC100996628), misc_RNA"	NA	NA	NA	NA	NA	XR_158969.1	NA	NA	NA	NA	NA	Unknown
CUST_4568_PI429285431	4.640126	P	4.5379186	P	1.07341458801492	0	lncRNA	4517-1_{1..913}	"transcript_id ""ENST00000453470.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000453470.2"" | genecode_v17"	chr13	 30446750	 30447662	-	ENSG00000224329.2	ENST00000453470.2	LINC00297	LINC00297-001	NA	NA	NA	inter
CUST_1860_PI429285431	11.199053	P	10.819729	P	1.30073223178588	0	lncRNA	1850-1_{1..309}	"transcript_id ""ENST00000602483.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602483.1"" | genecode_v17"	chr4	119199910	119200218	+	ENSG00000269893.1	ENST00000602483.1	SNHG8	SNHG8-003	PRSS12	NA	chr4:119201193-119210975	inter
CUST_50701_PI429285431	0.90169024	A	1.1856529	A	0.82133195828576	0	lncRNA	54372-1_{1..490}	hg19_lincRNAsTranscripts_TCONS_l2_00003593 range=chr10:61496635-61498362 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003593 range=chr10:61496635-61498362 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 61496635	 61497124	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8040_PI429285431	8.057676	P	8.166887	P	0.927094945124399	0	lncRNA	9648-1_{1..719}	lnc-TAF12-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TAF12-1:12	chr1	 28907072	 28907790	-	lnc-TAF12-1	lnc-TAF12-1:12	ENSG00000197989	SNHG12	TRNAU1AP	NA	chr1:28897072-28905057	inter
CUST_12971_PI429285431	6.868044	P	7.1256614	P	0.836468200289107	0	lncRNA	14597-1_{1..617}	lnc-RP11-262H14.4.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-262H14.4.1-4:1	chr9	 67269152	 67269768	+	lnc-RP11-262H14.4.1-4	lnc-RP11-262H14.4.1-4:1	XLOC_007374	linc-ANKRD20A1-4	NA	NA	NA	inter
CUST_43016_PI429285431	1.2003827	A	0.90316993	A	1.22876818695264	0	lncRNA	46273-1_{1..100}	ENST00000515910 ncrna:snRNA chromosome:GRCh37:18:26628584:26628683:1 gene:ENSG00000251719 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515910 ncrna:snRNA chromosome:GRCh37:18:26628584:26628683:1 gene:ENSG00000251719 gene_biotype:snRNA transcript_biotype:snRNA	chr18	 26628584	 26628683	+	ENSG00000251719	ENST00000515910	NA	NA	NA	NA	NA	inter
CUST_36260_PI429285431	0.8998786	A	1.2394649	A	0.790267892635783	0	lncRNA	37500-1_{1..3000}	n344793|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_342|NULL|-1.3348700|-0.3926699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344793|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_342|NULL|-1.3348700|-0.3926699	chr5	 27472375	 27475374	+	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80"	NA	inter
LNCA_21_P0014101	0.9028217	A	0.9199312	A	0.988210643845579	0	lncRNA	ENST00000396588	XR_108433	XR_108433	NA	Hs.659982	LOC654841	NA	ENST00000396588	THC2523535	NA	"PREDICTED: Homo sapiens hypothetical LOC654841 (LOC654841), miscRNA [XR_108433]"	chr2:228130048-228129989	hs|2q36.3	Agilent_HUMAN_G3V2	ENST00000396588	ENST00000396588	chr2	228129989	228130048	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1877_PI429285431	1.6699133	A	1.8448402	A	0.885812401246015	0	lncRNA	1867-1_{1..241}	"transcript_id ""ENST00000509671.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509671.1"" | genecode_v17"	chr4	128322881	128323121	-	ENSG00000248491.1	ENST00000509671.1	RP11-125O18.1	RP11-125O18.1-003	NA	NA	NA	inter
CUST_46563_PI429285431	2.158887	A	1.8780942	A	1.21486230073507	0	lncRNA	50747-1_{1..2054}	"gi|354459379|ref|NR_045387.1| Homo sapiens uncharacterized LOC100507472 (LOC100507472), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|354459379|ref|NR_045387.1| Homo sapiens uncharacterized LOC100507472 (LOC100507472), non-coding RNA"	Chr15	101847456	101849509	-	100507472	NR_045387.1	NA	NA	NA	NA	NA	inter
CUST_39476_PI429285431	0.91492844	A	0.9172235	A	0.998410450306252	0	lncRNA	40422-1_{1..493}	n387076|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010xwn.1||-0.9839290|-0.2531807	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387076|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010xwn.1||-0.9839290|-0.2531807	chr19	 43853207	 43853699	+	NA	NA	NA	NA	CD177	NA	chr19:43857825-43863700	inter
CUST_35158_PI429285431	1.079376	A	0.919418	A	1.11725461187963	0	lncRNA	36560-1_{1..357}	n342130|AJ007993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4614|NULL|3.1203300|-0.2256675	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342130|AJ007993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4614|NULL|3.1203300|-0.2256675	chr6	133834109	133834465	+	NA	NA	NA	NA	EYA4	NA	chr6:133824109-133853258	inner
CUST_5954_PI429285431	5.1000443	P	5.590134	P	0.711980828799214	0	lncRNA	5883-1_{1..734}	"transcript_id ""ENST00000592809.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592809.1"" | genecode_v17"	chr17	 68308972	 68309705	-	ENSG00000267109.1	ENST00000592809.1	CTD-2378E21.1	CTD-2378E21.1-001	NA	NA	NA	inter
CUST_23498_PI429285431	3.4398677	P	3.845631	P	0.754836818621463	0	lncRNA	25065-1_{1..396}	lnc-TIGIT-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIGIT-2:4	chr3	114097817	114098212	+	lnc-TIGIT-2	lnc-TIGIT-2:4	ENSG00000241560.1	ZBTB20-AS1	ZBTB20	NA	chr3:114087817-114108025	inner
CUST_32261_PI429285431	1.2091678	A	1.3968984	A	0.877985731959359	0	lncRNA	33950-1_{1..2347}	n338836|AK057710|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1259|NULL|-0.7143500|-0.3447228	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338836|AK057710|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1259|NULL|-0.7143500|-0.3447228	chr2	 53889615	 53891961	-	NA	NA	NA	NA	GPR75-ASB3	NA	chr2:53897430-53901963	inter
CUST_14266_PI429285431	4.1853647	P	4.490428	P	0.809406702064574	0	lncRNA	15924-1_{1..354}	lnc-TMTC3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMTC3-2:1	chr12	 89971947	 89972300	+	lnc-TMTC3-2	lnc-TMTC3-2:1	XLOC_009826	linc-CLLU1-9	ATP2B1	NA	chr12:89981826-89982126	inter
CUST_32585_PI429285431	1.5138578	A	1.1676815	A	1.27118702121761	0	lncRNA	34248-1_{1..3000}	n339205|BC040575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1637|NULL|-0.2613590|-0.2450295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339205|BC040575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1637|NULL|-0.2613590|-0.2450295	chr16	 49500016	 49503015	+	NA	NA	NA	NA	NA	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60"	NA	inter
CUST_48702_PI429285431	2.5388954	A	2.0777526	A	1.37663185581957	0	lncRNA	52544-1_{1..802}	hg19_lincRNAsTranscripts_TCONS_l2_00014843 range=chr2:114586945-114589161 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014843 range=chr2:114586945-114589161 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	114586945	114587746	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51328_PI429285431	0.8908101	A	1.0159705	A	0.916902095621839	0	lncRNA	54930-2_{3001..3202}	hg19_lincRNAsTranscripts_TCONS_l2_00008623 range=chr15:47083523-47099833 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008623 range=chr15:47083523-47099833 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 47086523	 47086724	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34862_PI429285431	0.90130746	A	1.2482864	A	0.786228769172245	0	lncRNA	36288-1_{1..532}	n341768|AF085855|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4244|NULL|-0.9982560|-0.3936986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341768|AF085855|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4244|NULL|-0.9982560|-0.3936986	chr9	119056537	119057068	+	NA	NA	NA	NA	PAPPA	NA	chr9:119046537-119067063	inner
CUST_26348_PI429285431	1.5944331	A	1.4563563	A	1.1004371881539	0	lncRNA	27855-1_{1..579}	lnc-ARHGAP17-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARHGAP17-3:1	chr16	 24830927	 24831505	-	lnc-ARHGAP17-3	lnc-ARHGAP17-3:1	ENSG00000261669.1	CTD-2515A14.1	TNRC6A	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40chr16:24820927-24837548"	NA	inner
CUST_32315_PI429285431	1.5623277	A	1.1000175	A	1.37774624962204	0	lncRNA	33998-1_{1..319}	n338892|BC039486|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1318|NULL|-1.1166700|-0.3896673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338892|BC039486|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1318|NULL|-1.1166700|-0.3896673	chr2	 83749937	 83750255	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36032_PI429285431	6.004905	P	6.092104	P	0.941348609451769	0	lncRNA	37358-1_{1..3000}	n344639|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_187|NULL|-1.5430200|-0.2933511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344639|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_187|NULL|-1.5430200|-0.2933511	chr10	  6821471	  6824470	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40"	NA	inter
CUST_29444_PI429285431	0.8919445	A	0.8951358	A	0.997790404161514	0	lncRNA	31200-1_{1..323}	n332842|AF073708|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000065955|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000065955|1.1486100|-0.3014048	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332842|AF073708|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000065955|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000065955|1.1486100|-0.3014048	chr22	 22516776	 22517098	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29532_PI429285431	1.0844914	A	0.89702415	A	1.1387627838988	0	lncRNA	31291-1_{1..207}	n332996|AF145207|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071306|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071306|-1.0623300|-0.1008978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332996|AF145207|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071306|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071306|-1.0623300|-0.1008978	chr3	 45928053	 45928259	+	NA	NA	NA	NA	CCR9	NA	chr3:45924319-45944667	inner
CUST_45748_PI429285431	7.297277	P	7.700593	P	0.756118364488091	0	lncRNA	50097-1_{1..1840}	"gi|372266099|ref|NR_027018.2| Homo sapiens post-GPI attachment to proteins 2 (PGAP2), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|372266099|ref|NR_027018.2| Homo sapiens post-GPI attachment to proteins 2 (PGAP2), transcript variant 8, non-coding RNA"	Chr11	  3829240	  3831079	+	27315	NR_027018.2	NA	NA	NA	NA	NA	inter
CUST_35984_PI429285431	2.8167357	A	3.012119	P	0.873340833003404	0	lncRNA	37326-2_{3001..3956}	n344601|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_149|NULL|-1.3539600|-0.2314070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344601|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_149|NULL|-1.3539600|-0.2314070	chr18	  5239720	  5240675	+	NA	NA	NA	NA	NA	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40"	NA	inter
CUST_44601_PI429285431	1.0030164	A	1.7226577	A	0.607248404750492	0	lncRNA	49177-1_{1..994}	"gi|310119624|ref|XR_110573.1| PREDICTED: Homo sapiens uncharacterized LOC100506219 (LOC100506219), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119624|ref|XR_110573.1| PREDICTED: Homo sapiens uncharacterized LOC100506219 (LOC100506219), misc_RNA"	NA	NA	NA	NA	NA	XR_110573.1	NA	NA	NA	NA	NA	Unknown
CUST_35215_PI429285431	1.0952494	A	0.889619	A	1.15319013466449	0	lncRNA	36615-1_{1..2268}	n342201|BC022040|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4691|NULL|-0.9848640|-0.2365378	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342201|BC022040|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4691|NULL|-0.9848640|-0.2365378	chrX	 13328770	 13331037	+	NA	NA	NA	NA	ATXN3L	"hg19_refFlat_ATXN3:range=chr14:92537320-925728965'pad=0,hg19_refFlat_ATXN3:range=chr14:92537320-925728965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ATXN3:range=chr14:92530664-925728965'pad=0,hg19_refFlat_ATXN3:range=chr14:92530664-925728965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ATXN3L:range=chrX:13336986-133380535'pad=0,hg19_refFlat_ATXN3L:range=chrX:13336986-133380535'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70chrX:13336766-13338518"	NA	inter
CUST_46719_PI429285431	8.532702	P	8.514168	P	1.01292966435939	0	lncRNA	50875-1_{1..1852}	"gi|259155321|ref|NR_028503.1| Homo sapiens MIR22 host gene (non-protein coding) (MIR22HG), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|259155321|ref|NR_028503.1| Homo sapiens MIR22 host gene (non-protein coding) (MIR22HG), transcript variant 2, non-coding RNA"	Chr17	  1614798	  1616649	-	84981	NR_028503.1	NA	NA	NA	NA	NA	inter
CUST_50045_PI429285431	6.9975224	P	7.018733	P	0.985405480104777	0	lncRNA	53781-1_{1..284}	hg19_lincRNAsTranscripts_TCONS_l2_00028191 range=chr8:48909213-48911333 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028191 range=chr8:48909213-48911333 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 48909213	 48909496	-	NA	NA	NA	NA	UBE2V2	NA	chr8:48920995-48921333	inter
CUST_25102_PI429285431	2.4602423	A	3.167437	P	0.612509998624292	0	lncRNA	26639-1_{1..1220}	lnc-JMJD8-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JMJD8-1:2	chr16	   728518	   729737	-	lnc-JMJD8-1	lnc-JMJD8-1:2	ENSG00000260394.2	LA16c-313D11.9	RHOT2	NA	chr16:718518-724171	inter
CUST_19761_PI429285431	6.1790032	P	6.567677	P	0.763831435266037	0	lncRNA	21419-1_{1..526}	lnc-ZDHHC9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZDHHC9-1:1	chrX	129091437	129091962	-	lnc-ZDHHC9-1	lnc-ZDHHC9-1:1	ENSG00000235189.1	RP4-537K23.4	NA	NA	NA	inter
CUST_14743_PI429285431	1.4428464	A	2.659006	A	0.430426974996167	0	lncRNA	16407-1_{1..890}	lnc-TMEM189-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TMEM189-1:1	chr20	 48782567	 48783456	-	lnc-TMEM189-1	lnc-TMEM189-1:1	XLOC_013788	linc-TMEM189-5	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30"	NA	inter
CUST_45903_PI429285431	3.3019016	P	4.458572	P	0.448546543657331	0	lncRNA	50214-1_{1..1555}	"gi|315075290|ref|NR_037651.1| Homo sapiens HSPB2-C11orf52 readthrough (non-protein coding) (HSPB2-C11orf52), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315075290|ref|NR_037651.1| Homo sapiens HSPB2-C11orf52 readthrough (non-protein coding) (HSPB2-C11orf52), non-coding RNA"	NW_003871080.1	   164727	   166281	+	100528019	NR_037651.1	NA	NA	NA	NA	NA	Unknown
CUST_19787_PI429285431	7.773904	P	7.726138	P	1.03366306618083	0	lncRNA	21445-1_{1..496}	lnc-POP5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POP5-1:2	chr12	121077853	121078348	-	lnc-POP5-1	lnc-POP5-1:2	ENSG00000256008.1	RP11-728G15.1	CABP1	NA	chr12:121078422-121087956	inter
CUST_42068_PI429285431	11.62755	P	11.579512	P	1.03385796728727	0	lncRNA	43980-1_{1..69}	ENST00000578185 ncrna:miRNA chromosome:GRCh37:10:100191049:100191117:-1 gene:ENSG00000264610 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578185 ncrna:miRNA chromosome:GRCh37:10:100191049:100191117:-1 gene:ENSG00000264610 gene_biotype:miRNA transcript_biotype:miRNA	chr10	100191049	100191117	-	ENSG00000264610	ENST00000578185	NA	NA	HPS1	NA	chr10:100181049-100201117	inner
CUST_43521_PI429285431	7.417497	P	7.247056	P	1.12540244277876	0	lncRNA	48305-1_{1..1336}	"gi|314122198|ref|NR_037643.1| Homo sapiens RWD domain containing 3 (RWDD3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|314122198|ref|NR_037643.1| Homo sapiens RWD domain containing 3 (RWDD3), non-coding RNA"	NA	NA	NA	NA	NA	NR_037643.1	NA	NA	NA	NA	NA	Unknown
CUST_46685_PI429285431	0.92189306	A	1.4121135	A	0.711916310551561	0	lncRNA	50848-1_{1..1926}	"gi|346421360|ref|NR_045112.1| Homo sapiens uncharacterized LOC100129617 (LOC100129617), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|346421360|ref|NR_045112.1| Homo sapiens uncharacterized LOC100129617 (LOC100129617), non-coding RNA"	Chr16	 81698959	 81700884	+	100129617	NR_045112.1	NA	NA	NA	NA	NA	inter
CUST_21340_PI429285431	0.92648506	A	1.0331628	A	0.928724281634609	0	lncRNA	22963-1_{1..285}	lnc-FAM9C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM9C-2:1	chrX	 12393063	 12393347	-	lnc-FAM9C-2	lnc-FAM9C-2:1	ENSG00000223487.1	FRMPD4-AS1	FRMPD4	NA	chrX:12383063-12403252	inner
CUST_30324_PI429285431	1.975918	A	1.1397715	A	1.78527522140998	0	lncRNA	32100-1_{1..250}	n335238|AY543658|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255354|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255354|-0.8746550|-0.1182335	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335238|AY543658|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255354|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255354|-0.8746550|-0.1182335	chr4	 76932357	 76932606	+	NA	NA	NA	NA	ART3	NA	chr4:76932337-77013001	inner
CUST_27848_PI429285431	1.1290927	A	0.9257015	A	1.151401662129	0	lncRNA	29441-1_{1..408}	n325084|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077814|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077814|-1.1913500|-0.4312360	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325084|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077814|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077814|-1.1913500|-0.4312360	chr20	  4359807	  4360214	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17270_PI429285431	4.59247	P	5.0522156	P	0.727114464279663	0	lncRNA	18988-1_{1..598}	lnc-LSR-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LSR-1:2	chr19	 35706538	 35707135	+	lnc-LSR-1	lnc-LSR-1:2	XLOC_013049	linc-LSR	FAM187B	NA	chr19:35715704-35716774	inter
CUST_51914_PI429285431	7.225817	P	7.447793	P	0.857390299659587	0	lncRNA	55457-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00016543 range=chr20:25815535-25835284 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016543 range=chr20:25815535-25835284 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	 25815535	 25818534	-	NA	NA	NA	NA	LOC100289375	NA	chr20:25825857-25845284	inter
LNCA_21_P0006100	6.016481	P	6.1912165	P	0.885929928329623	0	lncRNA	THC2666038	NA	NA	NA	NA	XLOC_007820	NA	NA	THC2666038	NA	"BROAD Institute lincRNA (XLOC_007820), lincRNA [TCONS_00015865]"	chr9:109864446-109864387	hs|9q31.2	Agilent_HUMAN_G3V2	THC2666038	THC2666038	chr9	109864387	109864446	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5828_PI429285431	1.2104616	A	1.2003827	A	1.00701062126941	0	lncRNA	5756-2_{3001..5473}	"transcript_id ""ENST00000587132.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587132.1"" | genecode_v17"	chr17	 34223711	 34226183	-	ENSG00000266999.1	ENST00000587132.1	AC015849.16	AC015849.16-001	RDM1	NA	chr17:34245084-34248027	inter
CUST_20787_PI429285431	4.7682877	P	5.2548075	P	0.713744782760184	0	lncRNA	22420-1_{1..361}	lnc-GABPA-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GABPA-5:1	chr21	 28311935	 28312295	+	lnc-GABPA-5	lnc-GABPA-5:1	ENSG00000223563.1	AP001601.2	ADAMTS5	NA	chr21:28301935-28322061	inner
CUST_29310_PI429285431	6.5692077	P	6.1591763	P	1.32871473302075	0	lncRNA	31061-1_{1..503}	n332495|DQ975380|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468702|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468702|1.6136700|-0.2328767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332495|DQ975380|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468702|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468702|1.6136700|-0.2328767	chr1	231502175	231502677	-	NA	NA	NA	NA	EGLN1	NA	chr1:231499497-231560790	inner
CUST_50227_PI429285431	1.4463972	A	1.0592766	A	1.30778066599604	0	lncRNA	53951-1_{1..1068}	hg19_lincRNAsTranscripts_TCONS_l2_00028765 range=chr9:67281399-67288130 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028765 range=chr9:67281399-67288130 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 67281399	 67282466	+	NA	NA	NA	NA	NA	"hg19_refFlat_AQP7:range=chr9:33385003-334012605'pad=0,hg19_refFlat_AQP7:range=chr9:33385003-334012605'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70"	NA	inter
CUST_207_PI429285431	0.9132489	A	0.917479	A	0.997072212465456	0	lncRNA	197-1_{1..587}	"transcript_id ""ENST00000602889.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602889.1"" | genecode_v17"	chr1	 32317514	 32318100	-	ENSG00000269967.1	ENST00000602889.1	RP11-84A19.4	RP11-84A19.4-001	PTP4A2	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-24.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00chr1:32372022-32397442"	NA	inner
CUST_41145_PI429285431	5.1161394	P	5.130453	P	0.99012762355158	0	lncRNA	41943-1_{1..83}	ENST00000385127 ncrna:miRNA chromosome:GRCh37:19:54205991:54206073:1 gene:ENSG00000207862 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385127 ncrna:miRNA chromosome:GRCh37:19:54205991:54206073:1 gene:ENSG00000207862 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54205991	 54206073	+	ENSG00000207862	ENST00000385127	NA	NA	NA	NA	NA	inter
CUST_33608_PI429285431	4.3282547	P	4.734885	P	0.754383329217358	0	lncRNA	35173-1_{1..311}	n340365|AF009278|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2826|NULL|-0.8540490|-0.2464208	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340365|AF009278|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2826|NULL|-0.8540490|-0.2464208	chr5	  9821166	  9821476	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6656_PI429285431	1.0901413	A	1.6218065	A	0.69175582866389	0	lncRNA	6602-1_{1..512}	"transcript_id ""ENST00000432942.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432942.1"" | genecode_v17"	chr20	 20951089	 20951600	+	ENSG00000234104.1	ENST00000432942.1	RP5-1177M21.1	RP5-1177M21.1-001	NA	NA	NA	inter
LNCA_21_P0008508	3.4361918	P	3.8758447	P	0.737311978218928	0	lncRNA	TCONS_00022963	NA	NA	NA	NA	XLOC_010798	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010798), lincRNA [TCONS_00022963]"	chr14:36691510-36691569	hs|14q13.3	Agilent_HUMAN_G3V2	TCONS_00022963	TCONS_00022963	chr14	 36691510	 36691569	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36727_PI429285431	4.9931545	P	4.5218616	P	1.38635131801996	0	lncRNA	37904-1_{1..3000}	n345211|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_760|NULL|-1.3891200|-0.2832935	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345211|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_760|NULL|-1.3891200|-0.2832935	chr13	 30890496	 30893495	+	NA	NA	NA	NA	KATNAL1	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20chr13:30880496-30881584"	NA	inter
CUST_48795_PI429285431	0.9075878	A	0.90260106	A	1.00346252551098	0	lncRNA	52633-1_{1..1718}	hg19_lincRNAsTranscripts_TCONS_l2_00014269 range=chr2:223184509-223186428 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014269 range=chr2:223184509-223186428 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	223184509	223186226	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35816_PI429285431	1.2573066	A	1.5732403	A	0.80333091350954	0	lncRNA	37222-1_{1..2202}	n344492|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_40|NULL|-1.3125500|-0.2669776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344492|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_40|NULL|-1.3125500|-0.2669776	chr4	174281879	174284080	+	NA	NA	NA	NA	SAP30	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-24.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40chr4:174292093-174298683"	NA	inter
CUST_15869_PI429285431	0.9005323	A	0.90916294	A	0.99403555456774	0	lncRNA	17560-1_{1..686}	lnc-CELF4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CELF4-1:1	chr18	 36052468	 36053153	-	lnc-CELF4-1	lnc-CELF4-1:1	XLOC_012819	linc-CELF4-8	NA	NA	NA	inter
CUST_3437_PI429285431	1.377247	A	1.7688795	A	0.76226656381387	0	lncRNA	3408-1_{1..458}	"transcript_id ""ENST00000455583.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455583.1"" | genecode_v17"	chr9	 78194585	 78195042	+	ENSG00000236376.1	ENST00000455583.1	RP11-470F18.1	RP11-470F18.1-001	NA	NA	NA	inter
CUST_6082_PI429285431	0.8940317	A	0.98433274	A	0.93932672412646	0	lncRNA	6006-1_{1..472}	"transcript_id ""ENST00000580258.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580258.1"" | genecode_v17"	chr18	 10375100	 10375571	+	ENSG00000266102.1	ENST00000580258.1	RP11-243E13.2	RP11-243E13.2-001	NA	NA	NA	inter
CUST_9184_PI429285431	4.617044	P	4.2616863	P	1.27930273067441	0	lncRNA	10699-1_{1..3000}	lnc-SBDS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SBDS-1:1	chr7	 66440233	 66443232	-	lnc-SBDS-1	lnc-SBDS-1:1	ENSG00000247634	ENST00000500273	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-39.11;hg19_refFlat_TMEM248:range=chr7:66406853-664205095'pad=0,hg19_refFlat_TMEM248:range=chr7:66406853-664205095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30"	NA	inter
CUST_44263_PI429285431	3.6657546	P	1.9950618	A	3.18367440781669	0	lncRNA	48904-4_{9001..10938}	"gi|284925116|ref|NR_033289.1| Homo sapiens glycerol kinase 5 (putative) (GK5), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|284925116|ref|NR_033289.1| Homo sapiens glycerol kinase 5 (putative) (GK5), transcript variant 2, non-coding RNA"	Chr3	141885369	141887306	-	256356	NR_033289.1	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_30945_PI429285431	8.085568	P	8.196028	P	0.92629266851041	0	lncRNA	32733-1_{1..269}	n337044|DQ123826|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341910_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341910_06|-1.1871500|-0.1151250	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337044|DQ123826|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341910_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341910_06|-1.1871500|-0.1151250	chr6	  2920456	  2920724	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13962_PI429285431	0.90518254	A	0.89953685	A	1.00392096103892	0	lncRNA	15608-1_{1..521}	lnc-BCKDHB-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BCKDHB-1:3	chr6	 81172589	 81173109	+	lnc-BCKDHB-1	lnc-BCKDHB-1:3	XLOC_005365	linc-TPBG-3	NA	NA	NA	inter
CUST_33167_PI429285431	1.2655125	A	2.4971828	A	0.425824156616556	0	lncRNA	34760-2_{3001..3597}	n339857|AL713660|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2305|NULL|-0.9804380|-0.2728356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339857|AL713660|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2305|NULL|-0.9804380|-0.2728356	chr4	 10072712	 10073308	-	NA	NA	NA	NA	WDR1	NA	chr4:10075963-10084643	inter
CUST_20523_PI429285431	0.8950269	A	0.89190054	A	1.00216937732075	0	lncRNA	22165-1_{1..887}	lnc-ZCCHC17-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZCCHC17-4:3	chr1	 31194135	 31195021	+	lnc-ZCCHC17-4	lnc-ZCCHC17-4:3	ENSG00000186056.4	RP5-1166H10.2	MATN1	"hg19_refFlat_MATN1:range=chr1:31186429-311963985'pad=0,hg19_refFlat_MATN1:range=chr1:31186429-311963985'pad=0 3'pad=0 strand=- repeatMasking=none,-102.10chr1:31184135-31196432"	NA	inter
CUST_21065_PI429285431	1.61028	A	2.111218	A	0.706647189540273	0	lncRNA	22692-1_{1..688}	lnc-FAM25A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FAM25A-1:1	chr10	 88875086	 88875773	+	lnc-FAM25A-1	lnc-FAM25A-1:1	ENSG00000237280.1	RP11-96C23.9	FAM35A	NA	chr10:88865086-88885280	inner
CUST_34510_PI429285431	9.221464	P	9.313221	P	0.938379238876846	0	lncRNA	35974-1_{1..3000}	n341386|BC030648|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3855|NULL|-0.9018000|-0.1475417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n341386|BC030648|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3855|NULL|-0.9018000|-0.1475417	chr8	  1244293	  1247292	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36915_PI429285431	0.91992533	A	0.904265	A	1.01091404191124	0	lncRNA	38073-3_{6001..8773}	n345387|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_936|NULL|-1.5503700|-0.2582715	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345387|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_936|NULL|-1.5503700|-0.2582715	chr20	 36127184	 36129956	-	NA	NA	NA	NA	BLCAP	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60chr20:36145819-36153449"	NA	inter
CUST_34948_PI429285431	1.6995523	A	1.7074847	A	0.994516767404424	0	lncRNA	36365-1_{1..1753}	n341866|BC042990|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4346|NULL|-0.9962410|-0.2797732	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341866|BC042990|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4346|NULL|-0.9962410|-0.2797732	chr6	 46871207	 46872959	+	NA	NA	NA	NA	GPR116	NA	chr6:46861207-46887778	inner
CUST_15928_PI429285431	4.4331675	P	4.327769	P	1.07579150363759	0	lncRNA	17625-1_{1..1494}	lnc-CSNK2A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CSNK2A1-1:1	chr20	   459246	   460739	-	lnc-CSNK2A1-1	lnc-CSNK2A1-1:1	XLOC_013621	linc-TBC1D20	CSNK2A1	NA	chr20:463338-469285	inter
CUST_16388_PI429285431	2.7517486	A	2.9711695	A	0.858910135096144	0	lncRNA	18086-1_{1..3000}	lnc-MKLN1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MKLN1-1:4	chr7	130615416	130618415	+	lnc-MKLN1-1	lnc-MKLN1-1:4	XLOC_006253	linc-MKLN1-1	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-26.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00"	NA	inter
CUST_17159_PI429285431	0.90245867	A	0.88555765	A	1.01178378247939	0	lncRNA	18868-1_{1..1290}	lnc-TMEM98-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM98-1:1	chr17	 31276776	 31278065	+	lnc-TMEM98-1	lnc-TMEM98-1:1	XLOC_012171	linc-SPACA3	TMEM98	NA	chr17:31266776-31268667	inter
CUST_31094_PI429285431	1.2529663	A	0.89752316	A	1.27937849641762	0	lncRNA	32885-1_{1..316}	n337373|DQ655927|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393040|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393040|-1.1350500|-0.1077485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337373|DQ655927|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393040|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393040|-1.1350500|-0.1077485	chr16	   223161	   223476	-	NA	NA	NA	NA	HBA1	"hg19_refFlat_HBA2:range=chr16:222912-2235995'pad=0,hg19_refFlat_HBA2:range=chr16:222912-2235995'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.00;hg19_refFlat_HBA1:range=chr16:226716-2274105'pad=0,hg19_refFlat_HBA1:range=chr16:226716-2274105'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.00chr16:226679-227520"	NA	inner
CUST_21011_PI429285431	1.7688795	A	1.9605083	A	0.875616593564696	0	lncRNA	22640-1_{1..588}	lnc-APC-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-APC-4:1	chr5	111532368	111532955	+	lnc-APC-4	lnc-APC-4:1	ENSG00000251187.1	CTC-459M5.2	EPB41L4A	"hg19_refFlat_EPB41L4A:range=chr5:111500687-1117547365'pad=0,hg19_refFlat_EPB41L4A:range=chr5:111500687-1117547365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60chr5:111522368-111542693"	NA	inner
CUST_18413_PI429285431	4.163684	P	4.2532153	P	0.939828029150903	0	lncRNA	20138-1_{1..2096}	lnc-MUC20-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MUC20-3:1	chr3	195636736	195638831	+	lnc-MUC20-3	lnc-MUC20-3:1	ENSG00000224614	AC124944.2	TNK2	NA	chr3:195626736-195635880	inter
CUST_5144_PI429285431	0.89372337	A	1.0971779	A	0.868468525660754	0	lncRNA	5084-1_{1..601}	"transcript_id ""ENST00000558875.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558875.1"" | genecode_v17"	chr15	 36735738	 36736338	-	ENSG00000259737.2	ENST00000558875.1	RP11-475A13.1	RP11-475A13.1-001	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50"	NA	inter
CUST_43825_PI429285431	1.6628617	A	1.7284929	A	0.955527169135412	0	lncRNA	48549-1_{1..2124}	"gi|334085256|ref|NR_038319.1| Homo sapiens uncharacterized LOC100505716 (LOC100505716), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|334085256|ref|NR_038319.1| Homo sapiens uncharacterized LOC100505716 (LOC100505716), non-coding RNA"	Chr2	 28530558	 28532681	-	100505716	NR_038319.1	NA	NA	NA	"hg19_refFlat_RPL23A:range=chr17:27047024-270508995'pad=0,hg19_refFlat_RPL23A:range=chr17:27047024-270508995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10"	NA	inter
CUST_22877_PI429285431	0.9157318	A	1.1450969	A	0.853010201178935	0	lncRNA	24454-1_{1..3000}	lnc-SAP30-5:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:17	chr4	174460349	174463348	+	lnc-SAP30-5	lnc-SAP30-5:17	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174450349-174451378	inter
CUST_16655_PI429285431	0.9023048	A	0.91172224	A	0.993493586984331	0	lncRNA	18357-1_{1..662}	lnc-TRIB2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIB2-3:2	chr2	 13414338	 13414999	+	lnc-TRIB2-3	lnc-TRIB2-3:2	XLOC_001356	linc-FAM84A-5	NA	NA	NA	inter
CUST_42374_PI429285431	1.1204499	A	0.90858823	A	1.15818175087243	0	lncRNA	45053-1_{1..115}	ENST00000517256 ncrna:snoRNA chromosome:GRCh37:5:167460096:167460210:-1 gene:ENSG00000253065 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517256 ncrna:snoRNA chromosome:GRCh37:5:167460096:167460210:-1 gene:ENSG00000253065 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	167460096	167460210	-	ENSG00000253065	ENST00000517256	NA	NA	ODZ2	NA	chr5:167450096-167470210	inner
CUST_27960_PI429285431	0.8898311	A	0.8880295	A	1.00124955400336	0	lncRNA	29564-1_{1..2112}	n325209|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329333|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329333|-0.9421010|-0.2816061	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325209|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329333|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329333|-0.9421010|-0.2816061	chr2	104729527	104731638	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42692_PI429285431	6.3009686	P	6.603673	P	0.810731217079084	0	lncRNA	45616-1_{1..135}	ENST00000383920 ncrna:snoRNA chromosome:GRCh37:2:10295199:10295333:-1 gene:ENSG00000206647 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000383920 ncrna:snoRNA chromosome:GRCh37:2:10295199:10295333:-1 gene:ENSG00000206647 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 10295199	 10295333	-	ENSG00000206647	ENST00000383920	NA	NA	C2orf48	NA	chr2:10285199-10305333	inner
LNCA_21_P0006955	0.90899855	A	0.9020754	A	1.00481029440085	0	lncRNA	TCONS_00018415	NA	NA	NA	NA	XLOC_008699	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008699), lincRNA [TCONS_00018415]"	chr10:3935430-3935371	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_00018415	TCONS_00018415	chr10	  3935371	  3935430	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003909	2.3149822	A	2.9616494	A	0.638754210030217	0	lncRNA	TCONS_00009176	NA	NA	NA	NA	XLOC_004182	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004182), lincRNA [TCONS_00009176]"	chr4:178147759-178134766	hs|4q34.3	Agilent_HUMAN_G3V2	TCONS_00009176	TCONS_00009176	chr4	178134766	178147759	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42134_PI429285431	0.90326583	A	0.9051168	A	0.998717828048947	0	lncRNA	44148-1_{1..86}	ENST00000385009 ncrna:miRNA chromosome:GRCh37:14:101520638:101520723:-1 gene:ENSG00000207742 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385009 ncrna:miRNA chromosome:GRCh37:14:101520638:101520723:-1 gene:ENSG00000207742 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101520638	101520723	-	ENSG00000207742	ENST00000385009	NA	NA	NA	NA	NA	inter
CUST_2309_PI429285431	9.843687	P	9.665478	P	1.13147836571066	0	lncRNA	2301-1_{1..578}	"transcript_id ""ENST00000442823.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442823.2"" | genecode_v17"	chr5	111496589	111497166	+	ENSG00000224032.2	ENST00000442823.2	EPB41L4A-AS1	EPB41L4A-AS1-003	EPB41L4A	NA	chr5:111498315-111508021	inter
CUST_4500_PI429285431	2.062817	A	2.86523	A	0.573389344571381	0	lncRNA	4449-1_{1..959}	"transcript_id ""ENST00000546180.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546180.1"" | genecode_v17"	chr12	128118641	128119599	-	ENSG00000256022.1	ENST00000546180.1	RP11-526P6.1	RP11-526P6.1-001	NA	NA	NA	inter
CUST_1984_PI429285431	3.2954988	P	3.543314	P	0.842170823391268	0	lncRNA	1975-1_{1..335}	"transcript_id ""ENST00000504167.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504167.1"" | genecode_v17"	chr4	175085592	175085926	-	ENSG00000251213.1	ENST00000504167.1	RP11-248N22.2	RP11-248N22.2-001	NA	NA	NA	inter
CUST_5411_PI429285431	7.8435574	P	8.0351	P	0.875668912594813	0	lncRNA	5345-1_{1..748}	"transcript_id ""ENST00000570843.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000570843.1"" | genecode_v17"	chr16	  3206737	  3207484	-	ENSG00000261889.1	ENST00000570843.1	RP11-473M20.16	RP11-473M20.16-001	CASP14L	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50chr16:3196737-3199964"	NA	inter
CUST_36974_PI429285431	1.0686483	A	1.4083152	A	0.79022374344894	0	lncRNA	38121-1_{1..3000}	n345437|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_986|NULL|-1.3016700|-0.4090405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n345437|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_986|NULL|-1.3016700|-0.4090405	chr1	 35641980	 35644979	-	NA	NA	NA	NA	SFPQ	NA	chr1:35649201-35657739	inter
CUST_39285_PI429285431	2.0512726	A	2.5420508	A	0.711641129946645	0	lncRNA	40256-2_{3001..3871}	n386263|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fmz.1||2.7758600|-0.2897543	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n386263|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fmz.1||2.7758600|-0.2897543	chr2	132163473	132164343	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43932_PI429285431	8.129815	P	7.079248	P	2.07134375576325	0	lncRNA	48642-1_{1..2558}	"gi|310923299|ref|NR_027467.2| Homo sapiens LIM and senescent cell antigen-like domains 3 (LIMS3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|310923299|ref|NR_027467.2| Homo sapiens LIM and senescent cell antigen-like domains 3 (LIMS3), transcript variant 2, non-coding RNA"	Chr2	110656009	110658566	+	96626	NR_027467.2	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30"	NA	inter
LNCA_21_P0011944	0.9103784	A	1.2789403	A	0.774554199298456	0	lncRNA	TCONS_l2_00014768	NA	NA	NA	NA	XLOC_l2_008190	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008190), lincRNA [TCONS_l2_00014768]"	chr2:108785976-108785917	hs|2q12.3	Agilent_HUMAN_G3V2	TCONS_l2_00014768	TCONS_l2_00014768	chr2	108785917	108785976	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002864	0.9087446	A	1.4369084	A	0.693436749015497	0	lncRNA	ENST00000497946	NA	NA	NA	NA	XLOC_003170	NA	ENST00000497946	THC2695838	NA	"BROAD Institute lincRNA (XLOC_003170), lincRNA [TCONS_00005794]"	chr3:81811932-81811873	hs|3p12.2	Agilent_HUMAN_G3V2	ENST00000497946	ENST00000497946	chr3	 81811873	 81811932	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43448_PI429285431	0.9105596	A	0.89536375	A	1.01058862748714	0	lncRNA	48255-1_{1..2169}	"gi|287334652|ref|NR_033298.1| Homo sapiens coiled-coil domain containing 163, pseudogene (CCDC163P), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|287334652|ref|NR_033298.1| Homo sapiens coiled-coil domain containing 163, pseudogene (CCDC163P), transcript variant 1, non-coding RNA"	Chr1	 45959598	 45961766	-	126661	NR_033298.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
LNCA_21_P0001614	1.3693422	A	0.91664815	A	1.36859354689856	0	lncRNA	TCONS_00001789	NA	NA	NA	NA	XLOC_001178	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001178), lincRNA [TCONS_00001789]"	chr1:207574990-207574931	hs|1q32.2	Agilent_HUMAN_G3V2	TCONS_00001789	TCONS_00001789	chr1	207574931	207574990	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37399_PI429285431	5.348899	P	5.123721	P	1.16892146142608	0	lncRNA	38504-1_{1..2036}	n345852|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1401|NULL|-1.3043400|-0.1699361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345852|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1401|NULL|-1.3043400|-0.1699361	chr2	239072910	239074945	+	NA	NA	NA	NA	FAM132B	NA	chr2:239072683-239077516	inter
CUST_44744_PI429285431	7.73359	P	7.0008645	P	1.66177550890548	0	lncRNA	49293-3_{6001..6196}	"gi|393715073|ref|NR_072996.1| Homo sapiens mitogen-activated protein kinase 13 (MAPK13), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393715073|ref|NR_072996.1| Homo sapiens mitogen-activated protein kinase 13 (MAPK13), transcript variant 2, non-coding RNA"	Chr6	 36104261	 36104456	+	5603	NR_072996.1	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.90"	NA	inter
LNCA_21_P0006702	0.9034088	A	0.9203587	A	0.988319971970035	0	lncRNA	ENST00000426752	NA	NA	NA	NA	XLOC_008603	NA	ENST00000426752	NA	NA	"BROAD Institute lincRNA (XLOC_008603), lincRNA [TCONS_00017866]"	chr10:107959034-107959093	hs|10q25.1	Agilent_HUMAN_G3V2	ENST00000426752	ENST00000426752	chr10	107959034	107959093	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43318_PI429285431	0.9055136	A	0.91174585	A	0.995689450686129	0	lncRNA	48149-1_{1..873}	ENST00000450174 havana:lincRNA chromosome:GRCh37:10:10988821:10994058:-1 gene:ENSG00000229240 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000450174 havana:lincRNA chromosome:GRCh37:10:10988821:10994058:-1 gene:ENSG00000229240 gene_biotype:lincRNA transcript_biotype:lincRNA	chr10	 10988821	 10989693	-	ENSG00000229240	ENST00000450174	NA	NA	NA	NA	NA	inter
CUST_28816_PI429285431	8.83471	P	9.095742	P	0.834490771352518	0	lncRNA	30524-1_{1..390}	n326228|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090897|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090897|-1.2449500|-0.4938272	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326228|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090897|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090897|-1.2449500|-0.4938272	chr1	218725068	218725457	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_293_PI429201921	1.5815098	A	2.0159302	A	0.7399909848911	0	lncRNA	205-1_{1..3000}	TC06003923.hg.1	TCONS_l2_00025513-XLOC_l2_013162 // Broad TUCP // linc-RAET1G chr6:-:150319156-150326280 // chr6 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00024982-XLOC_l2_013162 // Broad TUCP // linc-RAET1G chr6:-:150321840-150322530 // chr6 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6:-:150319156-150326280	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00025513-XLOC_l2_013162	linc-RAET1G	chr6	150319156	150326280	-	NA	NA	NA	NA	SCMH1	NA	chr1:41698247-41707815	Unknown
LNCA_21_P0006929	6.9018497	P	6.7312703	P	1.12551040958037	0	lncRNA	TCONS_00018368	NA	NA	NA	NA	XLOC_008652	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008652), lincRNA [TCONS_00018368]"	chr10:125188631-125208872	hs|10q26.13	Agilent_HUMAN_G3V2	TCONS_00018368	TCONS_00018368	chr10	125188631	125208872	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32249_PI429285431	0.8985446	A	2.2242818	A	0.398945284791701	0	lncRNA	33941-1_{1..2465}	n338824|AK023940|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1247|NULL|-0.0233205|-0.2751764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338824|AK023940|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1247|NULL|-0.0233205|-0.2751764	chr2	 47004921	 47007385	+	NA	NA	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70"	NA	inter
LNCA_21_P0000963	1.0725881	A	1.4570321	A	0.766074178863183	0	lncRNA	ENST00000420354	NA	NA	NA	NA	XLOC_000119	NA	ENST00000420354	NA	NA	"BROAD Institute lincRNA (XLOC_000119), lincRNA [TCONS_00000176]"	chr1:30893773-30893832	hs|1p35.2	Agilent_HUMAN_G3V2	ENST00000420354	ENST00000420354	chr1	 30893773	 30893832	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4403_PI429285431	0.99879366	A	1.6970322	A	0.616324249204006	0	lncRNA	4353-1_{1..728}	"transcript_id ""ENST00000446473.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446473.2"" | genecode_v17"	chr12	110318481	110319208	+	ENSG00000249094.2	ENST00000446473.2	RP1-7G5.6	RP1-7G5.6-001	GLTP	NA	chr12:110308481-110318293	inter
LNCA_21_P0004015	4.4870687	P	5.9523077	P	0.362175534881422	0	lncRNA	ENST00000514661	NA	NA	NA	NA	XLOC_004426	NA	ENST00000514661	NA	NA	"BROAD Institute lincRNA (XLOC_004426), lincRNA [TCONS_00009423]"	chr5:72742446-72742505	hs|5q13.2	Agilent_HUMAN_G3V2	ENST00000514661	ENST00000514661	chr5	 72742446	 72742505	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014449	2.4397545	A	2.3613868	A	1.05582278113108	0	lncRNA	XR_109854	XR_109854	XR_109854	NA	Hs.334272	LOC100506532	uncharacterized LOC100506532	NA	THC2704961	NA	"PREDICTED: Homo sapiens hypothetical LOC100506532 (LOC100506532), miscRNA [XR_109854]"	chr9:137437040-137437099	hs|9q34.3	Agilent_HUMAN_G3V2	XR_109854	XR_109854	chr9	137437040	137437099	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002753	1.2485101	A	0.9224308	A	1.25360192474668	0	lncRNA	ENST00000484679	NA	NA	NA	NA	XLOC_002715	NA	ENST00000484679	NA	NA	"BROAD Institute lincRNA (XLOC_002715), lincRNA [TCONS_00005546]"	chr3:78340000-78340059	hs|3p12.3	Agilent_HUMAN_G3V2	ENST00000484679	ENST00000484679	chr3	 78340000	 78340059	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44231_PI429285431	1.1637686	A	1.2409239	A	0.94792491954068	0	lncRNA	48880-1_{1..998}	"gi|397139039|ref|XR_158768.1| PREDICTED: Homo sapiens uncharacterized LOC100506907, transcript variant 2 (LOC100506907), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139039|ref|XR_158768.1| PREDICTED: Homo sapiens uncharacterized LOC100506907, transcript variant 2 (LOC100506907), misc_RNA"	NA	NA	NA	NA	NA	XR_158768.1	NA	NA	NA	NA	NA	Unknown
CUST_50960_PI429285431	1.0854867	A	1.7817236	A	0.617179950124679	0	lncRNA	54601-1_{1..2766}	hg19_lincRNAsTranscripts_TCONS_l2_00005763 range=chr12:76704292-76709665 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005763 range=chr12:76704292-76709665 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 76704292	 76707057	+	NA	NA	NA	NA	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-58.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-11.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90"	NA	inter
LNCA_21_P0007431	1.4832551	A	2.337974	A	0.552973059465941	0	lncRNA	TCONS_00019259	NA	NA	NA	NA	XLOC_009089	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009089), lincRNA [TCONS_00019259]"	chr11:22531854-22531913	hs|11p14.3	Agilent_HUMAN_G3V2	TCONS_00019259	TCONS_00019259	chr11	 22531854	 22531913	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36948_PI429285431	2.043852	A	2.4918642	A	0.733052179589166	0	lncRNA	38101-3_{6001..9000}	n345417|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_966|NULL|-1.3111500|-0.4156690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345417|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_966|NULL|-1.3111500|-0.4156690	chr1	198777346	198780345	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70"	NA	inter
CUST_20923_PI429285431	7.427897	P	7.6454964	P	0.859995252067527	0	lncRNA	22554-1_{1..2790}	lnc-RP11-503N18.3.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-503N18.3.1-2:1	chr4	  2428431	  2431220	+	lnc-RP11-503N18.3.1-2	lnc-RP11-503N18.3.1-2:1	ENSG00000206113.2	RP11-503N18.1	ZFYVE28	NA	chr4:2418431-2420370	inner
CUST_11400_PI429285431	0.9142778	A	0.9216199	A	0.99492377189972	0	lncRNA	12966-1_{1..223}	lnc-EXTL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXTL3-1:1	chr8	 28622556	 28622778	+	lnc-EXTL3-1	lnc-EXTL3-1:1	XLOC_006751	linc-HMBOX1	INTS9	NA	chr8:28625175-28632725	inter
LNCA_21_P0008469	0.90766025	A	0.9081271	A	0.999676456590217	0	lncRNA	ENST00000554142	NA	NA	NA	NA	XLOC_011090	NA	ENST00000554142	NA	NA	"BROAD Institute lincRNA (XLOC_011090), lincRNA [TCONS_00022819]"	chr14:84373524-84373465	hs|14q31.2	Agilent_HUMAN_G3V2	ENST00000554142	ENST00000554142	chr14	 84373465	 84373524	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11333_PI429285431	0.8954553	A	1.704696	A	0.570682132712853	0	lncRNA	12896-1_{1..273}	lnc-CR381653.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CR381653.1-2:1	chr21	 10208095	 10208367	+	lnc-CR381653.1-2	lnc-CR381653.1-2:1	XLOC_013854	linc-POTED-6	NA	NA	NA	inter
CUST_32651_PI429285431	6.631892	P	6.1804767	P	1.36738101509422	0	lncRNA	34304-2_{3001..5719}	n339276|BX537575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1708|NULL|1.0760000|-0.2849572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339276|BX537575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1708|NULL|1.0760000|-0.2849572	chr16	 71888532	 71891250	+	NA	NA	NA	NA	ATXN1L	NA	chr16:71875532-71901231	inner
CUST_30330_PI429285431	5.217572	P	5.8684773	P	0.636880541791046	0	lncRNA	32106-1_{1..560}	n335245|AY548967|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255385|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255385|1.0469200|-0.0278763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335245|AY548967|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255385|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255385|1.0469200|-0.0278763	chr11	 67807245	 67807804	+	NA	NA	NA	NA	TCIRG1	NA	chr11:67806462-67818366	inner
CUST_26674_PI429285431	0.9047828	A	0.9114133	A	0.995414632663718	0	lncRNA	28171-1_{1..176}	lncrnadb|EBER1_and_EBER2_RNAs_EBER2_(Human_herpesvirus_4)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncrnadb20130808	"lncrnadb20130808,"	>lncrnadb|EBER1_and_EBER2_RNAs_EBER2_(Human_herpesvirus_4)	NA	NA	      175	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2201_PI429285431	2.345609	A	3.1734395	P	0.563375800508441	0	lncRNA	2193-1_{1..780}	"transcript_id ""ENST00000512310.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512310.1"" | genecode_v17"	chr5	 72747323	 72748102	+	ENSG00000251604.1	ENST00000512310.1	RP11-79P5.7	RP11-79P5.7-001	FOXD1	NA	chr5:72742083-72744352	inter
CUST_7944_PI429285431	9.651035	P	9.686161	P	0.975946521256988	0	lncRNA	9555-1_{1..305}	lnc-UBQLN2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-UBQLN2-2:4	chrX	 56843753	 56844057	+	lnc-UBQLN2-2	lnc-UBQLN2-2:4	ENSG00000204272	RP11-622K12.1	NA	NA	NA	inter
CUST_17080_PI429285431	0.92140496	A	0.9239508	A	0.998236914246783	0	lncRNA	18789-1_{1..3000}	lnc-RP11-529J17.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-529J17.2.1-2:1	chr15	 23659829	 23662828	+	lnc-RP11-529J17.2.1-2	lnc-RP11-529J17.2.1-2:1	XLOC_011167	linc-MKRN3-2	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40"	NA	inter
CUST_12098_PI429285431	0.8868718	A	0.8866575	A	1.00014855247362	0	lncRNA	13694-1_{1..923}	lnc-COL28A1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL28A1-1:3	chr7	  7606080	  7607002	-	lnc-COL28A1-1	lnc-COL28A1-1:3	XLOC_006350	linc-COL28A1	MIOS	NA	chr7:7606616-7616158	inter
CUST_39461_PI429285431	3.4176586	P	3.3628995	P	1.03868564996355	0	lncRNA	40405-1_{1..1173}	n386984|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vxz.1||7.5785700|-0.1174228	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386984|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vxz.1||7.5785700|-0.1174228	chr17	 18330174	 18331346	+	NA	NA	NA	NA	LGALS9C	NA	chr17:18330120-18343940	inter
LNCA_33_P3232204	5.5810294	P	5.678733	P	0.93451932305809	0	lncRNA	XR_110259	XR_110259	XR_110259	100128343	Hs.675262	LOC100128343	uncharacterized LOC100128343	NA	THC2484897	NA	"PREDICTED: Homo sapiens hypothetical LOC100128343 (LOC100128343), miscRNA [XR_110259]"	chr14:105891919-105891978	hs|14q32.33	Agilent_HUMAN_G3V2	XR_110259	XR_110259	chr14	105891919	105891978	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45950_PI429285431	3.60004	P	2.29143	A	2.47702769659492	0	lncRNA	50247-2_{3001..6000}	"gi|242247112|ref|NR_027946.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant alpha, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|242247112|ref|NR_027946.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant alpha, non-coding RNA"	Chr12	  1103404	  1106403	+	23085	NR_027946.1	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10"	NA	inter
CUST_28491_PI429285431	0.9018159	A	0.906587	A	0.996698387834625	0	lncRNA	30159-1_{1..869}	n325834|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000142819|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000142819|-1.3370100|-0.3135597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325834|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000142819|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000142819|-1.3370100|-0.3135597	chr11	  5083867	  5084735	-	NA	NA	NA	NA	OR52E2	NA	chr11:5079880-5080857	inter
CUST_31073_PI429285431	2.0926	A	3.4905221	P	0.379475302901535	0	lncRNA	32863-1_{1..764}	n337306|BC131816|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000390708|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000390708|1.6484900|-0.1376241	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337306|BC131816|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000390708|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000390708|1.6484900|-0.1376241	chr5	 86563827	 86564590	+	NA	NA	NA	NA	RASA1	NA	chr5:86564151-86574591	inner
CUST_46189_PI429285431	0.90343887	A	0.9094869	A	0.995816599956679	0	lncRNA	50435-1_{1..575}	"gi|224458291|ref|NR_027062.1| Homo sapiens eukaryotic translation elongation factor 1 delta pseudogene 3 (EEF1DP3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224458291|ref|NR_027062.1| Homo sapiens eukaryotic translation elongation factor 1 delta pseudogene 3 (EEF1DP3), non-coding RNA"	Chr13	 32420920	 32421494	+	196549	NR_027062.1	NA	NA	NA	NA	NA	inter
CUST_15353_PI429285431	2.509088	A	2.2501557	A	1.19659281052226	0	lncRNA	17035-1_{1..486}	lnc-PLEKHA7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLEKHA7-1:1	chr11	 16790496	 16790981	-	lnc-PLEKHA7-1	lnc-PLEKHA7-1:1	XLOC_009383	linc-SOX6	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70"	NA	inter
CUST_50874_PI429285431	6.2825565	P	7.0082316	P	0.604714006305492	0	lncRNA	54518-1_{1..1791}	hg19_lincRNAsTranscripts_TCONS_l2_00004785 range=chr11:117005796-117009551 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004785 range=chr11:117005796-117009551 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	117005796	117007586	+	NA	NA	NA	NA	PAFAH1B2	NA	chr11:117015000-117019551	inter
CUST_7796_PI429285431	4.1352534	P	4.455248	P	0.8010728759956	0	lncRNA	9420-2_{3001..3965}	lnc-CD9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD9-1:1	chr12	  6308978	  6309942	+	lnc-CD9-1	lnc-CD9-1:1	ENSG00000250621	XLOC_009631	CD9	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50chr12:6309482-6317505"	NA	inter
LNCA_21_P0008511	2.2467005	A	2.169261	A	1.05514370517619	0	lncRNA	THC2682134	NA	NA	NA	NA	XLOC_010811	NA	NA	THC2682134	NA	"BROAD Institute lincRNA (XLOC_010811), lincRNA [TCONS_00022975]"	chr14:039939520-039939577	hs|14q21.1	Agilent_HUMAN_G3V2	THC2682134	THC2682134	chr14	 39939520	 39939577	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005889	0.8958608	A	0.8911765	A	1.0032521862577	0	lncRNA	TCONS_00015144	NA	NA	NA	NA	XLOC_007188	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007188), lincRNA [TCONS_00015144]"	chr8:118478022-118477963	hs|8q24.11	Agilent_HUMAN_G3V2	TCONS_00015144	TCONS_00015144	chr8	118477963	118478022	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010628	0.896186	A	0.8912615	A	1.00341923558578	0	lncRNA	TCONS_l2_00001299	NA	NA	NA	NA	XLOC_l2_000961	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000961), lincRNA [TCONS_l2_00001299]"	chr1:79575594-79575535	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_l2_00001299	TCONS_l2_00001299	chr1	 79575535	 79575594	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28586_PI429285431	0.896791	A	0.9032156	A	0.995556707387274	0	lncRNA	30266-1_{1..525}	n325947|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048552|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048552|-0.9632540|-0.4081093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325947|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048552|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048552|-0.9632540|-0.4081093	chr10	 73308119	 73308643	+	NA	NA	NA	NA	CDH23	NA	chr10:73298119-73318871	inner
CUST_10314_PI429285431	3.8534386	P	3.3381479	P	1.42928210805001	0	lncRNA	11842-1_{1..828}	lnc-MINA-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MINA-3:1	chr3	 96337003	 96337830	-	lnc-MINA-3	lnc-MINA-3:1	XLOC_003181	linc-DHFRL1-4	NA	NA	NA	inter
LNCA_21_P0002233	0.89801186	A	0.8926246	A	1.00374114475692	0	lncRNA	TCONS_00003719	NA	NA	NA	NA	XLOC_001508	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001508), lincRNA [TCONS_00003719]"	chr2:66921035-66921094	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00003719	TCONS_00003719	chr2	 66921035	 66921094	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16157_PI429285431	0.8943753	A	0.8958401	A	0.998985193274886	0	lncRNA	17863-1_{1..780}	lnc-PTER-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTER-1:1	chr10	 16581231	 16582010	+	lnc-PTER-1	lnc-PTER-1:1	XLOC_008402	linc-VIM-2	NA	NA	NA	inter
CUST_45870_PI429285431	0.903296	A	0.90677726	A	0.99758988345206	0	lncRNA	50196-3_{6001..6296}	"gi|253735742|ref|NR_028025.1| Homo sapiens CREB/ATF bZIP transcription factor (CREBZF), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|253735742|ref|NR_028025.1| Homo sapiens CREB/ATF bZIP transcription factor (CREBZF), transcript variant 3, non-coding RNA"	Chr11	 85374608	 85374903	-	58487	NR_028025.1	NA	NA	NA	NA	NA	inter
CUST_210_PI429285431	4.9181185	P	4.339416	P	1.49350544767659	0	lncRNA	200-1_{1..469}	"transcript_id ""ENST00000602618.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602618.1"" | genecode_v17"	chr1	 33726813	 33727281	+	ENSG00000270115.1	ENST00000602618.1	RP11-415J8.7	RP11-415J8.7-001	ZNF362	NA	chr1:33722174-33737281	inner
CUST_37920_PI429285431	7.381443	P	7.086276	P	1.22702700425495	0	lncRNA	39009-1_{1..403}	n346461|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2011|NULL|-1.4176600|-0.1767093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346461|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2011|NULL|-1.4176600|-0.1767093	chr16	 22477088	 22477490	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009232	0.90000105	A	0.8943188	A	1.00394640218508	0	lncRNA	TCONS_00025338	NA	NA	NA	NA	XLOC_012151	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012151), lincRNA [TCONS_00025338]"	chr17:26257649-26257871	hs|17q11.2	Agilent_HUMAN_G3V2	TCONS_00025338	TCONS_00025338	chr17	 26257649	 26257871	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43552_PI429285431	5.354802	P	6.5006485	P	0.45192444471636	0	lncRNA	48328-1_{1..3000}	"gi|301500673|ref|NR_036437.1| Homo sapiens potassium voltage-gated channel, Shaw-related subfamily, member 4 (KCNC4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301500673|ref|NR_036437.1| Homo sapiens potassium voltage-gated channel, Shaw-related subfamily, member 4 (KCNC4), transcript variant 4, non-coding RNA"	Chr1	110753336	110756335	+	3749	NR_036437.1	NA	NA	NA	NA	NA	inter
CUST_8921_PI429285431	0.8892229	A	0.8910633	A	0.998725145247533	0	lncRNA	10456-1_{1..526}	lnc-FAM55B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM55B-4:1	chr11	115267987	115268512	+	lnc-FAM55B-4	lnc-FAM55B-4:1	ENSG00000256315	AP000462.1	CADM1	NA	chr11:115257987-115278376	inner
CUST_11299_PI429285431	0.9161633	A	0.8923929	A	1.01661286994277	0	lncRNA	12862-1_{1..363}	lnc-ANKRD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-ANKRD1-1:1	chr10	 92757331	 92757693	-	lnc-ANKRD1-1	lnc-ANKRD1-1:1	XLOC_008902	linc-ANKRD1-2	NA	NA	NA	inter
CUST_38463_PI429285431	2.1997092	A	2.5344386	A	0.792932849610278	0	lncRNA	39483-1_{1..3000}	n382921|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dax.1||10.6922000|-0.1101593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n382921|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dax.1||10.6922000|-0.1101593	chr16	 11536046	 11539045	-	NA	NA	NA	NA	LOC400499	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-61.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-56.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40chr16:11536047-11585611"	NA	inter
CUST_10874_PI429285431	5.2617817	P	5.14577	P	1.08373475570512	0	lncRNA	12413-1_{1..666}	lnc-ACCN1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACCN1-1:8	chr17	 32501579	 32502244	-	lnc-ACCN1-1	lnc-ACCN1-1:8	XLOC_012440	linc-ACCN1-2	NA	NA	NA	inter
LNCA_21_P0011826	0.9039927	A	0.8979226	A	1.00421633654108	0	lncRNA	TCONS_l2_00013842	NA	NA	NA	NA	XLOC_l2_007449	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007449), lincRNA [TCONS_l2_00013842]"	chr2:98290819-98290878	hs|2q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00013842	TCONS_l2_00013842	chr2	 98290819	 98290878	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44695_PI429285431	6.2342873	P	6.5374603	P	0.810467927232369	0	lncRNA	49252-1_{1..2817}	"gi|311893293|ref|NR_037179.1| Homo sapiens uncharacterized LOC100507362 (LOC100507362), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|311893293|ref|NR_037179.1| Homo sapiens uncharacterized LOC100507362 (LOC100507362), transcript variant 1, non-coding RNA"	NT_167247.1	   800373	   803189	+	100507362	NR_037179.1	NA	NA	NA	NA	NA	Unknown
CUST_44065_PI429285431	0.8960283	A	0.8976029	A	0.998909165842093	0	lncRNA	48737-1_{1..1349}	"gi|310119124|ref|XR_108436.1| PREDICTED: Homo sapiens uncharacterized LOC440934 (LOC440934), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310119124|ref|XR_108436.1| PREDICTED: Homo sapiens uncharacterized LOC440934 (LOC440934), misc_RNA"	Chr2	223181254	223182602	+	440934	XR_108436.2	NA	NA	NA	NA	NA	inter
CUST_25735_PI429285431	3.2879097	P	3.8441992	P	0.680048949733817	0	lncRNA	27262-1_{1..3000}	lnc-SENP3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SENP3-1:2	chr17	  7484696	  7487695	+	lnc-SENP3-1	lnc-SENP3-1:2	ENSG00000264772.1	RP11-186B7.4	SENP3	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.01;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr17:7474696-7475287"	NA	inner
CUST_10194_PI429285431	2.8269553	P	3.6861506	P	0.551259951517068	0	lncRNA	11719-1_{1..740}	lnc-ABHD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABHD2-1:1	chr15	 89622665	 89623404	+	lnc-ABHD2-1	lnc-ABHD2-1:1	XLOC_011344	linc-ABHD2	ABHD2	NA	chr15:89631381-89632943	inter
CUST_19720_PI429285431	0.8913151	A	0.8901145	A	1.00083253887324	0	lncRNA	21378-1_{1..256}	lnc-THBS1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THBS1-1:7	chr15	 39773169	 39773424	+	lnc-THBS1-1	lnc-THBS1-1:7	ENSG00000259269.1	RP11-624L4.2	NA	NA	NA	inter
LNCA_21_P0009836	7.169678	P	7.595631	P	0.744346876459401	0	lncRNA	ENST00000439450	NA	NA	NA	NA	XLOC_013483	NA	ENST00000439450	NA	NA	"BROAD Institute lincRNA (XLOC_013483), lincRNA [TCONS_00027913]"	chr20:22203822-22203881	hs|20p11.22	Agilent_HUMAN_G3V2	ENST00000439450	ENST00000439450	chr20	 22203822	 22203881	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4787_PI429285431	0.9231272	A	1.0325158	A	0.926980824036138	0	lncRNA	4731-1_{1..547}	"transcript_id ""ENST00000557101.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557101.1"" | genecode_v17"	chr14	 40856762	 40857308	+	ENSG00000258480.1	ENST00000557101.1	RP11-662J14.2	RP11-662J14.2-001	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	inter
CUST_38857_PI429285431	5.6840777	P	5.7307935	P	0.96813772391175	0	lncRNA	39847-1_{1..1908}	n384719|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003koo.1||-1.3018600|-0.4030628	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384719|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003koo.1||-1.3018600|-0.4030628	chr5	108065630	108067537	+	NA	NA	NA	NA	LOC100652853	NA	chr5:108063524-108064130	inter
CUST_4207_PI429285431	1.0570064	A	1.5569497	A	0.707134572051022	0	lncRNA	4166-1_{1..172}	"transcript_id ""ENST00000537724.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537724.1"" | genecode_v17"	chr12	 26488797	 26488968	-	ENSG00000256185.1	ENST00000537724.1	RP11-612B6.2	RP11-612B6.2-001	ITPR2	NA	chr12:26488285-26499883	inner
CUST_51906_PI429285431	12.528116	P	12.2026205	P	1.25309474566353	0	lncRNA	55450-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00012778 range=chr19:59086565-59111095 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012778 range=chr19:59086565-59111095 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 59086565	 59089564	+	NA	NA	NA	NA	MZF1	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10chr19:59076565-59084942"	NA	inter
LNCA_21_P0006337	5.930695	P	5.702112	P	1.17168356852479	0	lncRNA	AY129027	NA	AY129027	NA	Hs.609301	LOC401561	FP7915 protein	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007896), lincRNA [TCONS_00016515]"	chr9:139509812-139509753	hs|9q34.3	Agilent_HUMAN_G3V2	AY129027	AY129027	chr9	139509753	139509812	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41876_PI429285431	0.9061055	A	0.9039126	A	1.0015211582415	0	lncRNA	43546-1_{1..66}	ENST00000577562 ncrna:miRNA chromosome:GRCh37:12:98332834:98332899:-1 gene:ENSG00000265861 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577562 ncrna:miRNA chromosome:GRCh37:12:98332834:98332899:-1 gene:ENSG00000265861 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 98332834	 98332899	-	ENSG00000265861	ENST00000577562	NA	NA	NA	NA	NA	inter
CUST_42454_PI429285431	7.8116536	P	7.9525456	P	0.906958221189569	0	lncRNA	45185-1_{1..118}	ENST00000364121 ncrna:snoRNA chromosome:GRCh37:15:85395729:85395846:-1 gene:ENSG00000200991 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364121 ncrna:snoRNA chromosome:GRCh37:15:85395729:85395846:-1 gene:ENSG00000200991 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 85395729	 85395846	-	ENSG00000200991	ENST00000364121	NA	NA	ALPK3	NA	chr15:85385729-85405846	inner
CUST_45504_PI429285431	0.8995093	A	0.8996796	A	0.999881964001947	0	lncRNA	49915-1_{1..3000}	"gi|333944016|ref|NR_038291.1| Homo sapiens uncharacterized LOC100507127 (LOC100507127), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|333944016|ref|NR_038291.1| Homo sapiens uncharacterized LOC100507127 (LOC100507127), non-coding RNA"	Chr10	  6821560	  6824559	+	100507127	NR_038291.1	NA	NA	NA	NA	NA	inter
CUST_46835_PI429285431	1.3850911	A	0.91666687	A	1.38359742131733	0	lncRNA	50971-3_{6001..7128}	"gi|237681126|ref|NR_027676.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237681126|ref|NR_027676.1| Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant 6, non-coding RNA"	Chr17	 41202312	 41203439	-	672	NR_027676.1	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20"	NA	inter
CUST_15753_PI429285431	0.90233445	A	1.6216351	A	0.607391805529584	0	lncRNA	17441-1_{1..211}	lnc-FAM50B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM50B-1:2	chr6	  3833849	  3834059	+	lnc-FAM50B-1	lnc-FAM50B-1:2	XLOC_005136	linc-FAM50B-1	NA	NA	NA	inter
CUST_16671_PI429285431	0.8962457	A	0.9298806	A	0.976955733949548	0	lncRNA	18375-1_{1..2550}	lnc-MAP3K8-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP3K8-5:1	chr10	 30255237	 30257786	+	lnc-MAP3K8-5	lnc-MAP3K8-5:1	XLOC_008435	linc-MAP3K8-1	NA	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90"	NA	inter
CUST_5680_PI429285431	1.5719049	A	1.1376829	A	1.35118198663193	0	lncRNA	5605-1_{1..3000}	"transcript_id ""ENST00000602739.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602739.1"" | genecode_v17"	chr16	 86553989	 86556988	-	ENSG00000270020.1	ENST00000602739.1	RP11-463O9.9	RP11-463O9.9-001	MTHFSD	NA	chr16:86559041-86567503	inter
CUST_38466_PI429285431	1.2271945	A	0.9134475	A	1.24293168153924	0	lncRNA	39485-1_{1..1958}	n382925|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dhi.1||2.9697000|-0.2546048	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382925|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dhi.1||2.9697000|-0.2546048	chr16	 20499023	 20500980	+	NA	NA	NA	NA	ACSM2A	NA	chr16:20489023-20498991	inter
CUST_34993_PI429285431	1.0053164	A	0.9119489	A	1.06685750852971	0	lncRNA	36406-1_{1..925}	n341918|AL117588|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4399|NULL|-1.1388100|-0.3409145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341918|AL117588|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4399|NULL|-1.1388100|-0.3409145	chr12	 52203488	 52204412	-	NA	NA	NA	NA	SCN8A	NA	chr12:52193488-52202307	inner
CUST_39243_PI429285431	0.8900025	A	1.328301	A	0.738004490642565	0	lncRNA	40214-1_{1..1946}	n386098|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010aza.1||10.4192000|-0.2743743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386098|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010aza.1||10.4192000|-0.2743743	chr15	 28878268	 28880213	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13980_PI429285431	4.6915274	P	4.954265	P	0.833504792742301	0	lncRNA	15625-1_{1..618}	lnc-CDH5-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH5-7:1	chr16	 64295061	 64295678	+	lnc-CDH5-7	lnc-CDH5-7:1	XLOC_011752	linc-CDH5-3	NA	"hg19_refFlat_EBPL:range=chr13:50235104-502655605'pad=0,hg19_refFlat_EBPL:range=chr13:50235104-502655605'pad=0 3'pad=0 strand=- repeatMasking=none,-104.40"	NA	inter
CUST_28695_PI429285431	4.903185	P	4.922654	P	0.986595765249762	0	lncRNA	30393-1_{1..499}	n326082|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046667|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046667|-0.3196020|-0.3594377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326082|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046667|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046667|-0.3196020|-0.3594377	chr10	  6700683	  6701181	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51850_PI429285431	3.3920631	P	3.4085608	P	0.988629800677605	0	lncRNA	55405-1_{1..580}	hg19_lincRNAsTranscripts_TCONS_l2_00012572 range=chr19:45116905-45121707 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012572 range=chr19:45116905-45121707 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 45116905	 45117484	+	NA	NA	NA	NA	IGSF23	NA	chr19:45116940-45131707	inner
CUST_6623_PI429285431	4.8756504	P	5.087723	P	0.86329611427528	0	lncRNA	6569-2_{3001..5402}	"transcript_id ""ENST00000595059.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595059.1"" | genecode_v17"	chr19	 58954815	 58957216	+	ENSG00000269473.1	ENST00000595059.1	CTD-2619J13.19	CTD-2619J13.19-001	ZNF324B	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50chr19:58956295-58967216"	NA	inter
CUST_11014_PI429285431	1.9490999	A	0.92647934	A	2.03160588758874	0	lncRNA	12559-1_{1..244}	lnc-RP5-915N17.9.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP5-915N17.9.1-1:1	chr1	229033535	229033778	-	lnc-RP5-915N17.9.1-1	lnc-RP5-915N17.9.1-1:1	XLOC_001242	linc-HIST3H2A-2	NA	NA	NA	inter
CUST_13770_PI429285431	0.90355486	A	1.2851678	A	0.767578953788365	0	lncRNA	15413-1_{1..464}	lnc-CHD9-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD9-3:3	chr16	 52646387	 52646850	+	lnc-CHD9-3	lnc-CHD9-3:3	XLOC_011726	linc-CHD9-2	NA	NA	NA	inter
LNCA_21_P0014256	6.3954363	P	6.9190445	P	0.695629875933927	0	lncRNA	ENST00000456004	XR_109030	XR_109030	NA	Hs.665362	STK32C	serine/threonine kinase 32C	ENST00000456004	THC2516477	GO:0000166|GO:0004674|GO:0005524|GO:0046872	"PREDICTED: Homo sapiens hypothetical LOC100506057, transcript variant 1 (LOC100506057), miscRNA [XR_109030]"	chr10:134143866-134143807	hs|10q26.3	Agilent_HUMAN_G3V2	ENST00000456004	ENST00000456004	chr10	134143807	134143866	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32319_PI429285431	9.91287	P	9.314137	P	1.51438602206955	0	lncRNA	34002-1_{1..1983}	n338898|AK091985|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1324|NULL|0.8736990|-0.1776775	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n338898|AK091985|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1324|NULL|0.8736990|-0.1776775	chr19	 50432458	 50434440	+	NA	NA	NA	NA	NUP62	"hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60chr19:50422458-50432988"	NA	inner
CUST_49758_PI429285431	3.3423438	P	3.5006194	P	0.896095500872889	0	lncRNA	53525-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00025849 range=chr7:45831388-45863181 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025849 range=chr7:45831388-45863181 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 45837388	 45840387	+	NA	NA	NA	NA	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-60.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_14729_PI429285431	0.9116564	A	0.9161395	A	0.996897374994599	0	lncRNA	16391-3_{6001..8436}	lnc-ZNF131-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF131-4:1	chr5	 42966426	 42968861	+	lnc-ZNF131-4	lnc-ZNF131-4:1	XLOC_004362	linc-ZNF131-5	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-56.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_7_PI429285431	2.524853	A	2.566803	A	0.971341159077574	0	lncRNA	6-1_{1..1616}	"transcript_id ""ENST00000504989.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000504989.1"" | genecode_v17"	chr5	  1363697	  1365312	-	ENSG00000250584.2	ENST00000504989.1	RP11-325I22.2	RP11-325I22.2-001	NA	NA	NA	inter
CUST_33316_PI429285431	0.932982	A	1.0264747	A	0.937250957830792	0	lncRNA	34899-1_{1..2432}	n340033|CR603327|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2487|NULL|0.1158540|-0.3563629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n340033|CR603327|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2487|NULL|0.1158540|-0.3563629	chr10	 53990156	 53992587	-	NA	NA	NA	NA	PRKG1	NA	chr10:53980156-54055274	inner
LNCA_21_P0002723	0.91048884	A	1.1957374	A	0.820600216516378	0	lncRNA	ENST00000451707	NA	AK125798	NA	Hs.590078	XLOC_002566	NA	ENST00000451707	THC2516975	NA	"BROAD Institute lincRNA (XLOC_002566), lincRNA [TCONS_00005488]"	chr3:1053900-1053959	hs|3p26.3	Agilent_HUMAN_G3V2	ENST00000451707	ENST00000451707	chr3	  1053900	  1053959	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7469_PI429285431	5.0572157	P	5.307587	P	0.840680025333722	0	lncRNA	9112-1_{1..3000}	lnc-CCDC83-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC83-1:1	chr11	 85723166	 85726165	+	lnc-CCDC83-1	lnc-CCDC83-1:1	ENSG00000247103	ENST00000499589	PICALM	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_PICALM:range=chr11:85670089-857798225'pad=0,hg19_refFlat_PICALM:range=chr11:85670089-857798225'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PICALM:range=chr11:85670089-857426305'pad=0,hg19_refFlat_PICALM:range=chr11:85670089-857426305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60chr11:85713166-85735382"	NA	inner
CUST_11616_PI429285431	0.92079645	A	1.526179	A	0.65729706583244	0	lncRNA	13196-1_{1..291}	lnc-SEC61G-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEC61G-7:1	chr7	 53486490	 53486780	-	lnc-SEC61G-7	lnc-SEC61G-7:1	XLOC_006444	linc-COBL-3	NA	NA	NA	inter
LNCA_21_P0007651	3.2787144	P	3.7157888	P	0.738630939500559	0	lncRNA	TCONS_00020615	NA	NA	NA	NA	XLOC_009932	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009932), lincRNA [TCONS_00020615]"	chr12:125638471-125638530	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00020615	TCONS_00020615	chr12	125638471	125638530	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46626_PI429285431	3.0934362	A	2.7242866	A	1.29159127468101	0	lncRNA	50802-2_{3001..4301}	"gi|83415190|ref|NR_002453.4| Homo sapiens smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene (LOC595101), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|83415190|ref|NR_002453.4| Homo sapiens smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene (LOC595101), non-coding RNA"	Chr16	 30281914	 30283214	-	595101	NR_002453.4	NA	NA	NA	NA	NA	inter
CUST_4199_PI429285431	3.0064077	A	2.9977417	A	1.00602489054784	0	lncRNA	4158-1_{1..573}	"transcript_id ""ENST00000539583.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539583.1"" | genecode_v17"	chr12	 24376221	 24376793	+	ENSG00000256120.1	ENST00000539583.1	RP11-778H2.1	RP11-778H2.1-002	SOX5	NA	chr12:24366221-24400899	inner
CUST_41121_PI429285431	0.89486176	A	0.88576657	A	1.00632421926374	0	lncRNA	41885-1_{1..69}	ENST00000385197 ncrna:miRNA chromosome:GRCh37:22:42296948:42297016:1 gene:ENSG00000207932 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385197 ncrna:miRNA chromosome:GRCh37:22:42296948:42297016:1 gene:ENSG00000207932 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 42296948	 42297016	+	ENSG00000207932	ENST00000385197	NA	NA	SREBF2	NA	chr22:42286948-42302375	inner
CUST_44880_PI429285431	0.91377586	A	0.91863585	A	0.996636979298619	0	lncRNA	49404-1_{1..2083}	"gi|336595213|ref|NR_038947.1| Homo sapiens uncharacterized LOC100506025 (LOC100506025), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336595213|ref|NR_038947.1| Homo sapiens uncharacterized LOC100506025 (LOC100506025), transcript variant 2, non-coding RNA"	Chr7	 16250111	 16252193	+	100506025	NR_038947.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004673	2.5446255	A	2.7482512	A	0.868365491453962	0	lncRNA	XR_110208	XR_110208	XR_110208	NA	Hs.221513	LOC100287366	uncharacterized LOC100287366	NA	THC2606183	NA	"PREDICTED: Homo sapiens hypothetical LOC100287366 (LOC100287366), miscRNA [XR_110208]"	chr6:108477838-108477897	hs|6q21	Agilent_HUMAN_G3V2	XR_110208	XR_110208	chr6	108477838	108477897	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21046_PI429285431	0.9198688	A	0.9278825	A	0.994460725113601	0	lncRNA	22673-1_{1..658}	lnc-GPC6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-GPC6-2:1	chr13	 93161766	 93162423	+	lnc-GPC6-2	lnc-GPC6-2:1	ENSG00000236240.1	GPC5-IT1	GPC5	NA	chr13:93151766-93172347	inner
CUST_24464_PI429285431	6.639051	P	7.026134	P	0.764674145042487	0	lncRNA	26017-1_{1..1798}	lnc-R3HCC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-R3HCC1-1:1	chr8	 23198539	 23200336	+	lnc-R3HCC1-1	lnc-R3HCC1-1:1	ENSG00000253837.1	RP11-177H13.2	LOXL2	"hg19_refFlat_LOXL2:range=chr8:23155556-232258645'pad=0,hg19_refFlat_LOXL2:range=chr8:23155556-232258645'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20chr8:23188539-23209049"	NA	inter
CUST_283_PI429201921	5.5863214	P	5.361594	P	1.16855642671743	0	lncRNA	201-3_...	TCUn_gl000222000005.hg.1	TCONS_00030027-XLOC_014509 // Rinn lincRNAs // linc-ZBTB37 chrUn_gl000222:-:74365-81359 // chrUn_gl000222 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrUn_gl000222:-:74365-81359	NA	Affy_HUMAN_HTA2.0	TCONS_00030027-XLOC_014509	linc-ZBTB37	chrUn_gl000222	    74365	    81359	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5758_PI429285431	11.253967	P	11.684194	P	0.742145003759561	0	lncRNA	5683-1_{1..699}	"transcript_id ""ENST00000584923.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000584923.1"" | genecode_v17"	chr17	 19091329	 19092027	+	ENSG00000263934.1	ENST00000584923.1	SNORD3A	SNORD3A-001	NA	NA	NA	inter
CUST_26539_PI429285431	4.9972744	P	4.517143	P	1.3948707047465	0	lncRNA	28045-1_{1..575}	lnc-NFAT5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NFAT5-1:1	chr16	 69744140	 69744714	+	lnc-NFAT5-1	lnc-NFAT5-1:1	ENSG00000261602.1	CTD-2033A16.1	NFAT5	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-23.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-23.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20chr16:69734140-69738553"	NA	inner
CUST_18346_PI429285431	6.7949753	P	6.523025	P	1.20743899520314	0	lncRNA	20074-2_{3001..4300}	lnc-CCDC96-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CCDC96-1:1	chr4	  7050386	  7051685	-	lnc-CCDC96-1	lnc-CCDC96-1:1	ENSG00000245748	RP11-367J11.2	TADA2B	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80chr4:7045156-7057958"	NA	inter
CUST_17244_PI429285431	2.5830588	A	3.2948709	P	0.610552770987251	0	lncRNA	18962-1_{1..609}	lnc-RP11-327F22.5.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-327F22.5.1-2:1	chr16	 50918123	 50918731	+	lnc-RP11-327F22.5.1-2	lnc-RP11-327F22.5.1-2:1	XLOC_011718	linc-CHD9-10	NA	NA	NA	inter
CUST_5373_PI429285431	8.011092	P	8.13034	P	0.92066742041088	0	lncRNA	5310-1_{1..645}	"transcript_id ""ENST00000558515.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558515.1"" | genecode_v17"	chr15	101709774	101710418	+	ENSG00000259182.1	ENST00000558515.1	RP11-424I19.2	RP11-424I19.2-001	CHSY1	NA	chr15:101715928-101721026	inter
CUST_49561_PI429285431	0.897193	A	1.3022867	A	0.755187243369972	0	lncRNA	53351-1_{1..508}	hg19_lincRNAsTranscripts_TCONS_l2_00025219 range=chr6:109630510-109657620 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025219 range=chr6:109630510-109657620 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	109630510	109631017	+	NA	NA	NA	NA	LOC100506339	NA	chr6:109648378-109667620	inter
CUST_31072_PI429285431	4.254115	P	4.763572	P	0.702486789336131	0	lncRNA	32862-1_{1..1010}	n337305|BC131808|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000390701|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000390701|2.6146400|-0.0709416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337305|BC131808|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000390701|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000390701|2.6146400|-0.0709416	chr7	  5360163	  5361172	-	NA	NA	NA	NA	TNRC18	NA	chr7:5350163-5395291	inner
CUST_28043_PI429285431	1.2122114	A	0.89753044	A	1.243736580892	0	lncRNA	29659-1_{1..732}	n325306|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326132|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326132|-1.3089900|-0.3709358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325306|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326132|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326132|-1.3089900|-0.3709358	chr2	 54163194	 54163925	-	NA	NA	NA	NA	PSME4	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-60.20chr2:54153194-54175707"	NA	inner
CUST_17965_PI429285431	0.8879447	A	0.93102044	A	0.970583513799686	0	lncRNA	19698-1_{1..566}	lnc-HOXC4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOXC4-4:1	chr12	 54537680	 54538245	+	lnc-HOXC4-4	lnc-HOXC4-4:1	XLOC_009765	linc-HNRNPA1-3	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_17833_PI429285431	5.2256007	P	5.5751257	P	0.784842460748044	0	lncRNA	19568-1_{1..297}	lnc-MBOAT1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBOAT1-3:3	chr6	 19749879	 19750175	-	lnc-MBOAT1-3	lnc-MBOAT1-3:3	XLOC_005633	linc-DEK-3	NA	NA	NA	inter
CUST_14761_PI429285431	1.6681006	A	1.5754596	A	1.06632040481847	0	lncRNA	16422-1_{1..256}	lnc-PCDH18-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH18-1:5	chr4	138621974	138622229	-	lnc-PCDH18-1	lnc-PCDH18-1:5	XLOC_004091	linc-PCDH18-1	NA	NA	NA	inter
CUST_43227_PI429285431	2.9654086	A	3.2932527	P	0.796726187176696	0	lncRNA	48042-1_{1..473}	ENST00000595500 havana:sense_intronic chromosome:GRCh37:19:51864966:51868798:-1 gene:ENSG00000268520 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000595500 havana:sense_intronic chromosome:GRCh37:19:51864966:51868798:-1 gene:ENSG00000268520 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 51864966	 51865438	-	ENSG00000268520	ENST00000595500	NA	NA	CLDND2	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.31;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-30.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10chr19:51870352-51872257"	NA	inner
CUST_18321_PI429285431	0.88659835	A	0.88504636	A	1.00107633632739	0	lncRNA	20048-1_{1..389}	lnc-NKX2-4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKX2-4-2:1	chr20	 21143437	 21143825	-	lnc-NKX2-4-2	lnc-NKX2-4-2:1	ENSG00000228604	RP5-872K7.7	PLK1S1	"hg19_refFlat_PLK1S1:range=chr20:21112795-212272145'pad=0,hg19_refFlat_PLK1S1:range=chr20:21112795-212272145'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PLK1S1:range=chr20:21106757-212272145'pad=0,hg19_refFlat_PLK1S1:range=chr20:21106757-212272145'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00chr20:21133437-21153531"	NA	inner
CUST_6280_PI429285431	3.076851	P	2.1647022	A	1.88184629921119	0	lncRNA	6204-1_{1..397}	"transcript_id ""ENST00000581634.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581634.1"" | genecode_v17"	chr18	 76265165	 76265561	+	ENSG00000265378.1	ENST00000581634.1	RP11-123I22.1	RP11-123I22.1-001	NA	NA	NA	inter
CUST_3712_PI429285431	0.9223479	A	0.9333219	A	0.992422259786631	0	lncRNA	3680-1_{1..559}	"transcript_id ""ENST00000601979.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601979.1"" | genecode_v17"	chr10	 67330210	 67330768	+	ENSG00000228065.5	ENST00000601979.1	RP11-222A11.1	RP11-222A11.1-002	NA	NA	NA	inter
CUST_48191_PI429285431	1.4483229	A	2.0568304	A	0.655874868169585	0	lncRNA	52054-1_{1..993}	"gi|410170311|ref|XR_172498.1| PREDICTED: Homo sapiens coiled-coil domain-containing protein 29-like (LOC101059949), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170311|ref|XR_172498.1| PREDICTED: Homo sapiens coiled-coil domain-containing protein 29-like (LOC101059949), misc_RNA"	NA	NA	NA	NA	NA	XR_172498.1	NA	NA	NA	NA	NA	Unknown
CUST_47891_PI429285431	2.0576074	A	1.1154915	A	1.92134407434013	0	lncRNA	51785-2_{3001..3066}	"gi|410171765|ref|XR_171364.1| PREDICTED: Homo sapiens uncharacterized LOC100133039 (LOC100133039), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171765|ref|XR_171364.1| PREDICTED: Homo sapiens uncharacterized LOC100133039 (LOC100133039), misc_RNA"	NA	NA	NA	NA	NA	XR_171364.1	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-61.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00"	NA	Unknown
LNCA_21_P0008431	0.90035206	A	0.89466625	A	1.00394887953026	0	lncRNA	TCONS_00022735	NA	NA	NA	NA	XLOC_011010	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011010), lincRNA [TCONS_00022735]"	chr14:45551627-45551568	hs|14q21.2	Agilent_HUMAN_G3V2	TCONS_00022735	TCONS_00022735	chr14	 45551568	 45551627	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2321_PI429285431	0.9020304	A	0.89200765	A	1.00697142896303	0	lncRNA	2313-1_{1..553}	"transcript_id ""ENST00000508636.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508636.1"" | genecode_v17"	chr5	116156689	116157241	-	ENSG00000249150.1	ENST00000508636.1	CTC-472C24.1	CTC-472C24.1-001	NA	NA	NA	inter
CUST_26363_PI429285431	1.349549	A	2.528823	A	0.441573653080395	0	lncRNA	27870-1_{1..412}	lnc-RPS6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS6-1:1	chr9	 19292273	 19292684	-	lnc-RPS6-1	lnc-RPS6-1:1	ENSG00000232978.1	RP11-146N23.4	DENND4C	NA	chr9:19282273-19302577	inter
CUST_36474_PI429285431	0.906969	A	1.5793341	A	0.627477181129105	0	lncRNA	37680-1_{1..3000}	n344980|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_529|NULL|-1.4297300|-0.3451773	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344980|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_529|NULL|-1.4297300|-0.3451773	chr8	104256113	104259112	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15687_PI429285431	1.2001579	A	1.4130845	A	0.862785239353285	0	lncRNA	17374-1_{1..314}	lnc-CPT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPT2-1:1	chr1	 53656964	 53657277	+	lnc-CPT2-1	lnc-CPT2-1:1	XLOC_000194	linc-CPT2-1	CPT2	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-16.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20chr1:53651967-53667133"	NA	inter
CUST_33476_PI429285431	2.4115086	A	1.5541215	A	1.81175402572423	0	lncRNA	35050-1_{1..2618}	n340212|AK129931|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2673|NULL|-1.1289300|-0.4086162	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340212|AK129931|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2673|NULL|-1.1289300|-0.4086162	chr4	123189510	123192127	+	NA	NA	NA	NA	KIAA1109	NA	chr4:123179510-123202126	inner
CUST_26372_PI429285431	5.4620767	P	5.5485063	P	0.941850771560997	0	lncRNA	27879-1_{1..399}	lnc-STOML1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STOML1-2:1	chr15	 74165636	 74166034	-	lnc-STOML1-2	lnc-STOML1-2:1	ENSG00000260624.1	RP11-24D15.1	TBC1D21	NA	chr15:74165968-74175707	inter
CUST_32569_PI429285431	0.90260875	A	1.6448606	A	0.597805530894737	0	lncRNA	34233-1_{1..928}	n339186|AL713703|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1617|NULL|-0.9357340|-0.2456986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339186|AL713703|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1617|NULL|-0.9357340|-0.2456986	chr16	 31207451	 31208378	+	NA	NA	NA	NA	FUS	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30chr16:31197451-31206192"	NA	inter
CUST_43623_PI429285431	6.846154	P	7.0216513	P	0.885462245801905	0	lncRNA	48383-2_{3001..3338}	"gi|375298684|ref|NR_046329.1| Homo sapiens tripartite motif containing 46 (TRIM46), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375298684|ref|NR_046329.1| Homo sapiens tripartite motif containing 46 (TRIM46), transcript variant 7, non-coding RNA"	Chr1	155150230	155150567	+	80128	NR_046329.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003671	0.9068477	A	0.9003608	A	1.00450650031403	0	lncRNA	TCONS_00008309	NA	NA	NA	NA	XLOC_003764	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003764), lincRNA [TCONS_00008309]"	chr4:163778182-163813536	hs|4q32.2	Agilent_HUMAN_G3V2	TCONS_00008309	TCONS_00008309	chr4	163778182	163813536	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014657	8.269518	P	8.527663	P	0.836162356071621	0	lncRNA	XR_110926	XR_110926	XR_110926	NA	NA	LOC100506502	uncharacterized LOC100506502	NA	THC2657673	NA	"PREDICTED: Homo sapiens hypothetical LOC100506502 (LOC100506502), miscRNA [XR_110926]"	chrX:7986269-7986328	hs|Xp22.31	Agilent_HUMAN_G3V2	XR_110926	XR_110926	chrX	  7986269	  7986328	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11885_PI429285431	3.004654	A	3.9474282	P	0.520231549699282	0	lncRNA	13467-1_{1..615}	lnc-MT1A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MT1A-1:2	chr16	 56678023	 56678637	+	lnc-MT1A-1	lnc-MT1A-1:2	XLOC_011736	linc-MT1B	MT1A	NA	chr16:56672578-56673999	inter
CUST_34013_PI429285431	0.8996488	A	0.90445733	A	0.996672529329775	0	lncRNA	35548-1_{1..1306}	n340828|BC040899|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3292|NULL|-0.7727320|-0.3493469	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340828|BC040899|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3292|NULL|-0.7727320|-0.3493469	chr6	  4049127	  4050432	-	NA	NA	NA	NA	PRPF4B	"hg19_refFlat_PRPF4B:range=chr6:4021660-40608505'pad=0,hg19_refFlat_PRPF4B:range=chr6:4021660-40608505'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20chr6:4039127-4065217"	NA	inner
CUST_30775_PI429285431	9.9856205	P	10.106097	P	0.919883776970905	0	lncRNA	32561-1_{1..365}	n336617|Z36844|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327152|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327152|0.7991560|-0.1541146	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336617|Z36844|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327152|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327152|0.7991560|-0.1541146	chr5	177634133	177634497	+	NA	NA	NA	NA	AGXT2L2	NA	chr5:177635540-177647709	inner
CUST_31194_PI429285431	5.2219887	P	5.404564	P	0.881128722279198	0	lncRNA	32988-1_{1..1592}	n337636|BC017738|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|15|NULL|-1.1434100|-0.2179878	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337636|BC017738|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|15|NULL|-1.1434100|-0.2179878	chr1	  1185156	  1186747	-	NA	NA	NA	NA	FAM132A	NA	chr1:1177833-1182102	inter
CUST_26545_PI429285431	1.029349	A	1.1850979	A	0.897666275219754	0	lncRNA	28050-1_{1..500}	lnc-RP11-778D12.2.1-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-778D12.2.1-4:5	chr8	107072609	107073108	-	lnc-RP11-778D12.2.1-4	lnc-RP11-778D12.2.1-4:5	ENSG00000251003.2	RP11-152P17.2	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70"	NA	inter
CUST_34515_PI429285431	0.9085146	A	0.9127289	A	0.997083132186378	0	lncRNA	35979-1_{1..749}	n341393|AF339801|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3862|NULL|-1.3206500|-0.3932332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341393|AF339801|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3862|NULL|-1.3206500|-0.3932332	chr13	 98929726	 98930474	-	NA	NA	NA	NA	FARP1	NA	chr13:98919726-98940408	inner
CUST_42465_PI429285431	7.3379135	P	7.4973645	P	0.895365726613384	0	lncRNA	45208-1_{1..125}	ENST00000578179 ncrna:snoRNA chromosome:GRCh37:22:20113925:20114049:1 gene:ENSG00000264346 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578179 ncrna:snoRNA chromosome:GRCh37:22:20113925:20114049:1 gene:ENSG00000264346 gene_biotype:snoRNA transcript_biotype:snoRNA	chr22	 20113925	 20114049	+	ENSG00000264346	ENST00000578179	NA	NA	ZDHHC8	NA	chr22:20119364-20124049	inner
CUST_8624_PI429285431	6.374009	P	6.328788	P	1.03184123033803	0	lncRNA	10177-1_{1..347}	lnc-SHPRH-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SHPRH-2:5	chr6	147453002	147453348	-	lnc-SHPRH-2	lnc-SHPRH-2:5	ENSG00000233452	RP11-497D6.4	NA	NA	NA	inter
CUST_17948_PI429285431	0.9041414	A	1.54219	A	0.642581521756572	0	lncRNA	19679-1_{1..499}	lnc-DISC1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DISC1-3:1	chr1	232450341	232450839	+	lnc-DISC1-3	lnc-DISC1-3:1	XLOC_000616	linc-KIAA1383-2	NA	NA	NA	inter
CUST_1665_PI429285431	7.12605	P	7.2586727	P	0.912171689510763	0	lncRNA	1650-1_{1..408}	"transcript_id ""ENST00000429834.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429834.1"" | genecode_v17"	chr3	195563211	195563618	-	ENSG00000223783.1	ENST00000429834.1	AC124944.5	AC124944.5-001	TNK2	NA	chr3:195590236-195597275	inter
CUST_44332_PI429285431	0.9234334	A	2.374477	A	0.365756751394873	0	lncRNA	48961-1_{1..1029}	"gi|397139968|ref|XR_159060.1| PREDICTED: Homo sapiens uncharacterized LOC100996363 (LOC100996363), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139968|ref|XR_159060.1| PREDICTED: Homo sapiens uncharacterized LOC100996363 (LOC100996363), misc_RNA"	NA	NA	NA	NA	NA	XR_159060.1	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50"	NA	Unknown
CUST_43247_PI429285431	6.3034897	P	6.6929464	P	0.763417043183667	0	lncRNA	48064-1_{1..624}	ENST00000595383 havana:sense_intronic chromosome:GRCh37:10:77402234:77402857:1 gene:ENSG00000268659 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000595383 havana:sense_intronic chromosome:GRCh37:10:77402234:77402857:1 gene:ENSG00000268659 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr10	 77402234	 77402857	+	ENSG00000268659	ENST00000595383	NA	NA	NA	NA	NA	inter
CUST_51954_PI429285431	0.8832799	A	0.8950558	A	0.99187079031082	0	lncRNA	55497-1_{1..987}	hg19_lincRNAsTranscripts_TCONS_l2_00016221 range=chr20:25965852-26032160 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016221 range=chr20:25965852-26032160 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 25965852	 25966838	+	NA	NA	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00"	NA	inter
CUST_36396_PI429285431	0.9180912	A	1.2518277	A	0.793478754314572	0	lncRNA	37614-1_{1..301}	n344913|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_462|NULL|-1.2703000|-0.3362142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344913|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_462|NULL|-1.2703000|-0.3362142	chr6	 83088840	 83089140	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2682_PI429285431	5.421556	P	5.4125094	P	1.00629032681315	0	lncRNA	2668-1_{1..845}	"transcript_id ""ENST00000421161.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421161.1"" | genecode_v17"	chr6	159528823	159529667	+	ENSG00000224478.1	ENST00000421161.1	RP11-13P5.1	RP11-13P5.1-001	NA	NA	NA	inter
CUST_23458_PI429285431	0.887224	A	0.89260864	A	0.996274608519144	0	lncRNA	25025-1_{1..579}	lnc-EEA1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EEA1-1:4	chr12	 93532824	 93533402	-	lnc-EEA1-1	lnc-EEA1-1:4	ENSG00000257322.1	RP11-511B23.2	NA	NA	NA	inter
CUST_49692_PI429285431	4.9622693	P	5.879649	P	0.529469798913487	0	lncRNA	53469-1_{1..805}	hg19_lincRNAsTranscripts_TCONS_l2_00027041 range=chr7:5886953-5893996 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027041 range=chr7:5886953-5893996 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  5886953	  5887757	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41965_PI429285431	0.92025524	A	0.96009684	A	0.972761745451756	0	lncRNA	43756-1_{1..88}	ENST00000580455 ncrna:miRNA chromosome:GRCh37:1:65523438:65523525:-1 gene:ENSG00000265996 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580455 ncrna:miRNA chromosome:GRCh37:1:65523438:65523525:-1 gene:ENSG00000265996 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 65523438	 65523525	-	ENSG00000265996	ENST00000580455	NA	NA	NA	NA	NA	inter
CUST_5909_PI429285431	2.3121302	A	2.5956676	A	0.821574096161005	0	lncRNA	5840-1_{1..449}	"transcript_id ""ENST00000576313.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000576313.1"" | genecode_v17"	chr17	 55156508	 55156956	-	ENSG00000263004.1	ENST00000576313.1	RP11-166P13.3	RP11-166P13.3-001	AKAP1	NA	chr17:55162553-55172385	inter
CUST_46028_PI429285431	3.9886174	P	3.7179518	P	1.206364266048	0	lncRNA	50309-1_{1..453}	"gi|310122885|ref|XR_110340.1| PREDICTED: Homo sapiens uncharacterized LOC100506125, transcript variant 2 (LOC100506125), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310122885|ref|XR_110340.1| PREDICTED: Homo sapiens uncharacterized LOC100506125, transcript variant 2 (LOC100506125), misc_RNA"	Chr12	 49182904	 49183356	+	100506125	XR_110340.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0002308	2.7277725	A	2.308567	A	1.33719095365386	0	lncRNA	TCONS_00003923	NA	NA	NA	NA	XLOC_001733	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001733), lincRNA [TCONS_00003923]"	chr2:164175254-164175313	hs|2q24.3	Agilent_HUMAN_G3V2	TCONS_00003923	TCONS_00003923	chr2	164175254	164175313	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43681_PI429285431	5.8834434	P	4.514452	P	2.5828993037262	0	lncRNA	48434-1_{1..3000}	"gi|289063429|ref|NR_033302.1| Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 9 (DHX9), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|289063429|ref|NR_033302.1| Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 9 (DHX9), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_033302.1	NA	NA	NA	NA	NA	Unknown
CUST_36650_PI429285431	1.5198009	A	2.1119902	A	0.66333552650199	0	lncRNA	37841-1_{1..836}	n345145|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_694|NULL|-1.2937700|-0.2842535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345145|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_694|NULL|-1.2937700|-0.2842535	chr11	 72857408	 72858243	-	NA	NA	NA	NA	FCHSD2	NA	chr11:72847408-72853143	inter
CUST_33037_PI429285431	1.4735423	A	0.9007293	A	1.48742095263231	0	lncRNA	34651-1_{1..496}	n339725|AJ308020|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2170|NULL|-0.9541250|-0.2289433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339725|AJ308020|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2170|NULL|-0.9541250|-0.2289433	chr20	 56224090	 56224585	+	NA	NA	NA	NA	PMEPA1	NA	chr20:56223452-56234500	inner
CUST_15300_PI429285431	1.6705159	A	2.44812	A	0.583334739883432	0	lncRNA	16978-1_{1..277}	lnc-LUC7L3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LUC7L3-1:1	chr17	 48872042	 48872318	+	lnc-LUC7L3-1	lnc-LUC7L3-1:1	XLOC_012244	linc-WFIKKN2	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40"	NA	inter
CUST_40056_PI429285431	1.0698924	A	1.2868803	A	0.860359846488802	0	lncRNA	40907-1_{1..1148}	n407259|NR_026722|lncRNA|Homosapiens||RefGeneNoncode|NR_026722||3.4770600|-0.2162665	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407259|NR_026722|lncRNA|Homosapiens||RefGeneNoncode|NR_026722||3.4770600|-0.2162665	chr12	 56146246	 56147393	-	NA	NA	NA	NA	ORMDL2	NA	chr12:56211806-56214959	inner
LNCA_21_P0004904	0.91546273	A	0.92287225	A	0.994877278225391	0	lncRNA	TCONS_00011877	NA	NA	NA	NA	XLOC_005368	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005368), lincRNA [TCONS_00011877]"	chr6:82982000-82982059	hs|6q14.1	Agilent_HUMAN_G3V2	TCONS_00011877	TCONS_00011877	chr6	 82982000	 82982059	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011574	3.8571503	P	3.9818487	P	0.91719576586425	0	lncRNA	ENST00000456537	NA	NA	NA	NA	XLOC_l2_006013	NA	ENST00000456537	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006013), lincRNA [TCONS_l2_00011628]"	chr17:19342530-19342471	hs|17p11.2	Agilent_HUMAN_G3V2	ENST00000456537	ENST00000456537	chr17	 19342471	 19342530	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7947_PI429285431	0.8951262	A	0.90212876	A	0.995157955953732	0	lncRNA	9558-1_{1..2872}	lnc-FXYD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FXYD2-1:1	chr11	117688455	117691326	-	lnc-FXYD2-1	lnc-FXYD2-1:1	ENSG00000251594	ENSG00000251594.1	FXYD6-FXYD2	NA	chr11:117690790-117700134	inter
CUST_18518_PI429285431	4.3927317	P	4.5699	P	0.884437253807966	0	lncRNA	20232-1_{1..188}	lnc-RBM11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBM11-1:1	chr21	 15765643	 15765830	+	lnc-RBM11-1	lnc-RBM11-1:1	ENSG00000242342	AF130249.5	NA	NA	NA	inter
CUST_17216_PI429285431	2.6572616	A	2.9880962	A	0.795076398485035	0	lncRNA	18930-1_{1..459}	lnc-TSTA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSTA3-1:1	chr8	144716705	144717163	-	lnc-TSTA3-1	lnc-TSTA3-1:1	XLOC_007253	linc-TSTA3	ZNF623	NA	chr8:144718373-144727048	inter
CUST_9621_PI429285431	3.0938132	P	3.7655942	P	0.627731277535452	0	lncRNA	11137-1_{1..389}	lnc-SIPA1L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIPA1L1-1:1	chr14	 71764774	 71765162	+	lnc-SIPA1L1-1	lnc-SIPA1L1-1:1	XLOC_010868	linc-SIPA1L1	NA	NA	NA	inter
CUST_969_PI429285431	3.3749683	A	4.2475305	P	0.5461759902035	0	lncRNA	958-1_{1..677}	"transcript_id ""ENST00000600136.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600136.1"" | genecode_v17"	chr2	 98086771	 98087447	+	ENSG00000241481.2	ENST00000600136.1	AC159540.2	AC159540.2-003	NA	"hg19_refFlat_NEBL:range=chr10:21074676-214627625'pad=0,hg19_refFlat_NEBL:range=chr10:21074676-214627625'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_NEBL:range=chr10:21074812-214627625'pad=0,hg19_refFlat_NEBL:range=chr10:21074812-214627625'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30"	NA	inter
CUST_3355_PI429285431	1.1094422	A	2.219373	A	0.463316253739979	0	lncRNA	3330-1_{1..552}	"transcript_id ""ENST00000423112.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423112.2"" | genecode_v17"	chr9	  3526723	  3527274	+	ENSG00000232104.2	ENST00000423112.2	RP11-509J21.1	RP11-509J21.1-001	RFX3	NA	chr9:3516723-3525983	inter
CUST_17527_PI429285431	2.2494087	A	2.9744563	A	0.604977083783944	0	lncRNA	19252-1_{1..1184}	lnc-SLC15A4-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC15A4-2:8	chr12	128602459	128603642	-	lnc-SLC15A4-2	lnc-SLC15A4-2:8	XLOC_010257	linc-DHX37-11	NA	NA	NA	inter
CUST_42037_PI429285431	0.9162575	A	0.92109	A	0.996655970014475	0	lncRNA	43915-1_{1..69}	ENST00000580028 ncrna:miRNA chromosome:GRCh37:1:196551543:196551611:-1 gene:ENSG00000265986 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580028 ncrna:miRNA chromosome:GRCh37:1:196551543:196551611:-1 gene:ENSG00000265986 gene_biotype:miRNA transcript_biotype:miRNA	chr1	196551543	196551611	-	ENSG00000265986	ENST00000580028	NA	NA	KCNT2	NA	chr1:196541543-196561611	inner
CUST_18272_PI429285431	5.573564	P	6.338868	P	0.58832938469541	0	lncRNA	20004-3_{6001..6246}	lnc-WHAMM-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-WHAMM-2:4	chr15	 83427645	 83427890	+	lnc-WHAMM-2	lnc-WHAMM-2:4	ENSG00000250988	AC105339.1	FSD2	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80chr15:83428024-83435831"	NA	inter
CUST_10892_PI429285431	1.7231554	A	1.8834925	A	0.894815963877283	0	lncRNA	12433-1_{1..440}	lnc-EXT1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXT1-4:2	chr8	118453199	118453638	-	lnc-EXT1-4	lnc-EXT1-4:2	XLOC_007188	linc-RAD21-1	NA	NA	NA	inter
CUST_48807_PI429285431	7.8839865	P	7.792248	P	1.0656535603412	0	lncRNA	52645-1_{1..1207}	hg19_lincRNAsTranscripts_TCONS_l2_00014326 range=chr2:241894875-241904967 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014326 range=chr2:241894875-241904967 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	241894875	241896081	+	NA	NA	NA	NA	LOC728763	NA	chr2:241884875-241908771	inter
CUST_13141_PI429285431	4.5968122	P	4.5355372	P	1.04338746037171	0	lncRNA	14769-1_{1..959}	lnc-SEC24D-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEC24D-1:3	chr4	119594347	119595305	-	lnc-SEC24D-1	lnc-SEC24D-1:3	XLOC_004053	linc-PRSS12-1	METTL14	NA	chr4:119584347-119605224	inter
CUST_30046_PI429285431	7.5913377	P	7.697709	P	0.928921571074453	0	lncRNA	31815-1_{1..222}	n334549|U52699|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220266_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220266_03|-1.1577200|-0.0679826	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334549|U52699|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220266_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220266_03|-1.1577200|-0.0679826	chr6	 32065954	 32066175	-	NA	NA	NA	NA	TNXB	NA	chr6:32055954-32077151	inner
CUST_11574_PI429285431	0.9015433	A	0.9035517	A	0.998608851747657	0	lncRNA	13153-1_{1..1340}	lnc-AL445989.1-19:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AL445989.1-19:2	chr13	 68610324	 68611663	+	lnc-AL445989.1-19	lnc-AL445989.1-19:2	XLOC_010419	linc-C13orf34-6	NA	NA	NA	inter
CUST_20827_PI429285431	3.7634897	P	4.171043	P	0.753900848093934	0	lncRNA	22458-1_{1..415}	lnc-PLAT-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLAT-3:5	chr8	 42123133	 42123547	-	lnc-PLAT-3	lnc-PLAT-3:5	ENSG00000253408.1	RP11-231D20.2	IKBKB	NA	chr8:42128820-42133216	inter
CUST_19871_PI429285431	5.528095	P	5.5579367	P	0.979527770569813	0	lncRNA	21527-1_{1..430}	lnc-WSB1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-WSB1-4:1	chr17	 25792138	 25792567	+	lnc-WSB1-4	lnc-WSB1-4:1	ENSG00000265801.1	RP11-720N19.2	KSR1	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50chr17:25799036-25802567"	NA	inter
CUST_48314_PI429285431	3.9580557	P	3.5418746	P	1.33439066382966	0	lncRNA	52172-1_{1..647}	hg19_lincRNAsTranscripts_TCONS_l2_00002009 range=chr1:26542605-26550244 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002009 range=chr1:26542605-26550244 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 26542605	 26543251	+	NA	NA	NA	NA	CEP85	NA	chr1:26545577-26560244	inter
CUST_20810_PI429285431	2.844083	A	3.5029883	P	0.63335869981963	0	lncRNA	22441-1_{1..688}	lnc-TSPAN11-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSPAN11-2:6	chr12	 30954635	 30955322	+	lnc-TSPAN11-2	lnc-TSPAN11-2:6	ENSG00000235884.2	RP11-77I22.3	NA	NA	NA	inter
CUST_36100_PI429285431	0.9002158	A	0.9192613	A	0.986885420808493	0	lncRNA	37395-1_{1..2060}	n344680|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_229|NULL|-1.6283600|-0.2791520	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344680|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_229|NULL|-1.6283600|-0.2791520	chr8	103949851	103951910	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30"	NA	inter
CUST_32133_PI429285431	1.0151019	A	1.0890237	A	0.950051878195299	0	lncRNA	33833-1_{1..2067}	n338700|AK094821|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1120|NULL|4.8799600|-0.3125198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338700|AK094821|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1120|NULL|4.8799600|-0.3125198	chr2	 24056793	 24058859	-	NA	NA	NA	NA	ATAD2B	NA	chr2:24046793-24149936	inner
CUST_2904_PI429285431	0.88935775	A	0.891389	A	0.998593035493415	0	lncRNA	2885-1_{1..1188}	"transcript_id ""ENST00000453459.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453459.1"" | genecode_v17"	chr7	112262433	112263620	+	ENSG00000223646.1	ENST00000453459.1	AC002463.3	AC002463.3-001	NA	NA	NA	inter
CUST_14293_PI429285431	3.926245	P	4.2898417	P	0.777224508621292	0	lncRNA	15952-1_{1..716}	lnc-DZANK1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DZANK1-3:2	chr20	 18251601	 18252316	-	lnc-DZANK1-3	lnc-DZANK1-3:2	XLOC_013666	linc-OVOL2	NA	NA	NA	inter
LNCA_21_P0002347	2.39638	A	2.8572564	A	0.726544767383085	0	lncRNA	TCONS_00004016	NA	NA	NA	NA	XLOC_001855	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001855), lincRNA [TCONS_00004016]"	chr2:217264344-217264403	hs|2q35	Agilent_HUMAN_G3V2	TCONS_00004016	TCONS_00004016	chr2	217264344	217264403	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44858_PI429285431	7.039091	P	7.2544527	P	0.861330187398457	0	lncRNA	49384-1_{1..635}	"gi|397139166|ref|XR_110201.2| PREDICTED: Homo sapiens uncharacterized LOC100505903 (LOC100505903), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139166|ref|XR_110201.2| PREDICTED: Homo sapiens uncharacterized LOC100505903 (LOC100505903), misc_RNA"	NA	NA	NA	NA	NA	XR_110201.2	NA	NA	NA	NA	NA	Unknown
CUST_33672_PI429285431	0.9213998	A	0.922012	A	0.999575745317541	0	lncRNA	35234-1_{1..1578}	n340438|CR598481|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2899|NULL|-1.2342500|-0.5513063	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340438|CR598481|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2899|NULL|-1.2342500|-0.5513063	chr5	 40711695	 40713272	-	NA	NA	NA	NA	TTC33	NA	chr5:40711678-40723273	inner
LNCA_21_P0009519	0.8955376	A	1.9080118	A	0.495695408270834	0	lncRNA	TCONS_00026399	NA	NA	NA	NA	XLOC_012750	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012750), lincRNA [TCONS_00026399]"	chr18:8559924-8559865	hs|18p11.22	Agilent_HUMAN_G3V2	TCONS_00026399	TCONS_00026399	chr18	  8559865	  8559924	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25984_PI429285431	2.9222515	A	2.9881945	A	0.955320679773459	0	lncRNA	27504-1_{1..956}	lnc-AGAP8-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGAP8-2:2	chr10	 51371133	 51372088	-	lnc-AGAP8-2	lnc-AGAP8-2:2	ENSG00000244393.2	RP11-592B15.3	TIMM23B	NA	chr10:51371379-51381300	inner
CUST_37217_PI429285431	2.6919577	A	3.1294146	A	0.738435133126565	0	lncRNA	38329-1_{1..1227}	n345652|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1201|NULL|-1.7080600|-0.3383436	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345652|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1201|NULL|-1.7080600|-0.3383436	chr4	125549497	125550723	-	NA	NA	NA	NA	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50"	NA	inter
CUST_16805_PI429285431	3.8271012	P	4.200983	P	0.771703310589222	0	lncRNA	18511-2_{3001..3076}	lnc-NHLRC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NHLRC3-1:1	chr13	 39665919	 39665994	+	lnc-NHLRC3-1	lnc-NHLRC3-1:1	XLOC_010353	linc-COG6-2	NA	NA	NA	inter
CUST_44368_PI429285431	0.88931805	A	0.8875717	A	1.00121121050245	0	lncRNA	48987-1_{1..3000}	"gi|408358026|ref|NR_073198.1| Homo sapiens death domain containing 1 (DTHD1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|408358026|ref|NR_073198.1| Homo sapiens death domain containing 1 (DTHD1), transcript variant 2, non-coding RNA"	Chr4	 36283237	 36286236	+	401124	NR_073198.1	NA	NA	NA	NA	NA	inter
CUST_12320_PI429285431	1.0645673	A	1.8588606	A	0.576625562596852	0	lncRNA	13933-1_{1..1233}	lnc-BTBD17-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-BTBD17-4:2	chr17	 72108785	 72110017	-	lnc-BTBD17-4	lnc-BTBD17-4:2	XLOC_012572	linc-SDK2-2	NA	NA	NA	inter
CUST_17704_PI429285431	1.1048237	A	0.8942933	A	1.15711351301901	0	lncRNA	19434-1_{1..346}	lnc-DMRTB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRTB1-1:1	chr1	 53923437	 53923782	+	lnc-DMRTB1-1	lnc-DMRTB1-1:1	XLOC_000198	linc-DMRTB1-1	DMRTB1	NA	chr1:53925072-53933158	inter
CUST_9542_PI429285431	0.90141886	A	0.9964925	A	0.936224458174301	0	lncRNA	11055-1_{1..1505}	lnc-CDH11-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CDH11-3:2	chr16	 65605674	 65607178	-	lnc-CDH11-3	lnc-CDH11-3:2	XLOC_011977	linc-CDH11-7	NA	NA	NA	inter
CUST_42523_PI429285431	11.582495	P	11.428385	P	1.11273495915144	0	lncRNA	45315-1_{1..132}	ENST00000362682 ncrna:snoRNA chromosome:GRCh37:5:40655065:40655196:1 gene:ENSG00000199552 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362682 ncrna:snoRNA chromosome:GRCh37:5:40655065:40655196:1 gene:ENSG00000199552 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	 40655065	 40655196	+	ENSG00000199552	ENST00000362682	NA	NA	NA	NA	NA	inter
CUST_33519_PI429285431	3.1422195	A	3.7681088	P	0.648020204301935	0	lncRNA	35087-1_{1..2532}	n340255|BC040325|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2716|NULL|-1.1658500|-0.2985665	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340255|BC040325|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2716|NULL|-1.1658500|-0.2985665	chr4	150075446	150077977	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3843_PI429285431	1.1143408	A	1.903843	A	0.578543683242714	0	lncRNA	3812-1_{1..592}	"transcript_id ""ENST00000602949.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602949.1"" | genecode_v17"	chr11	   325703	   326294	-	ENSG00000270030.1	ENST00000602949.1	RP11-326C3.13	RP11-326C3.13-001	IFITM3	NA	chr11:319673-320914	inter
CUST_38263_PI429285431	2.9318733	A	2.8648849	A	1.04752770441179	0	lncRNA	39319-1_{1..699}	n381813|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qls.1||-0.7988900|-0.2767757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381813|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qls.1||-0.7988900|-0.2767757	chr12	  3445188	  3445886	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47432_PI429285431	9.619847	P	9.288337	P	1.25832971914666	0	lncRNA	51468-1_{1..3000}	"gi|398776358|ref|NR_073068.1| Homo sapiens BCL2-like 13 (apoptosis facilitator) (BCL2L13), transcript variant 12, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|398776358|ref|NR_073068.1| Homo sapiens BCL2-like 13 (apoptosis facilitator) (BCL2L13), transcript variant 12, non-coding RNA"	Chr22	 18138428	 18141427	+	23786	NR_073068.1	NA	NA	NA	NA	NA	inter
CUST_9360_PI429285431	6.2603083	P	6.7423105	P	0.715983278779799	0	lncRNA	10864-1_{1..861}	lnc-EPHA4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPHA4-2:1	chr2	221718044	221718904	-	lnc-EPHA4-2	lnc-EPHA4-2:1	XLOC_002498	linc-OBSL1-4	NA	NA	NA	inter
CUST_3671_PI429285431	1.2680445	A	0.9072544	A	1.28412896542862	0	lncRNA	3639-1_{1..462}	"transcript_id ""ENST00000418426.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418426.1"" | genecode_v17"	chr10	 44161116	 44161577	+	ENSG00000228426.1	ENST00000418426.1	RP11-402L1.11	RP11-402L1.11-001	NA	NA	NA	inter
CUST_13505_PI429285431	7.2343483	P	6.6845403	P	1.4638908621511	0	lncRNA	15145-1_{1..458}	lnc-NOL6-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOL6-1:5	chr9	 33510814	 33511271	-	lnc-NOL6-1	lnc-NOL6-1:5	XLOC_007668	linc-NOL6-4	NA	NA	NA	inter
CUST_2931_PI429285431	1.3926535	A	1.7310455	A	0.790922367547796	0	lncRNA	2912-1_{1..305}	"transcript_id ""ENST00000496217.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000496217.1"" | genecode_v17"	chr7	129423210	129423514	-	ENSG00000242078.1	ENST00000496217.1	RP11-738B7.1	RP11-738B7.1-001	NA	NA	NA	inter
CUST_30453_PI429285431	10.059343	P	10.088039	P	0.980305960458873	0	lncRNA	32233-1_{1..368}	n335594|CR595381|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000274576|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000274576|-1.3124900|-0.4546184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335594|CR595381|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000274576|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000274576|-1.3124900|-0.4546184	chr7	157178628	157178995	+	NA	NA	NA	NA	DNAJB6	NA	chr7:157168628-157188996	inner
CUST_52137_PI429285431	1.2704206	A	0.93997556	A	1.25740119558577	0	lncRNA	55661-1_{1..560}	hg19_lincRNAsTranscripts_TCONS_l2_00018331 range=chr22:20397878-20398637 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018331 range=chr22:20397878-20398637 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 20397878	 20398437	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31489_PI429285431	1.1628249	A	1.3394337	A	0.884780319109913	0	lncRNA	33253-1_{1..1167}	n337969|BC047487|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|355|NULL|-0.8256250|-0.3621798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337969|BC047487|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|355|NULL|-0.8256250|-0.3621798	chr1	 58326214	 58327380	+	NA	NA	NA	NA	DAB1	NA	chr1:58316214-58338786	inner
CUST_9373_PI429285431	0.90217614	A	0.89261806	A	1.0066471510973	0	lncRNA	10874-1_{1..1419}	lnc-AKR1E2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AKR1E2-5:1	chr10	  4094838	  4096256	+	lnc-AKR1E2-5	lnc-AKR1E2-5:1	XLOC_008358	linc-AKR1E2-5	NA	NA	NA	inter
LNCA_19_P00317532	0.90858823	A	0.90185994	A	1.00467458719582	0	lncRNA	ENST00000418215	NA	NA	NA	NA	XLOC_006237	NA	ENST00000418215	NA	NA	"BROAD Institute lincRNA (XLOC_006237), lincRNA [TCONS_00013076]"	chr7:126991518-126991577	hs|7q31.33	Agilent_HUMAN_G3V2	ENST00000418215	ENST00000418215	chr7	126991518	126991577	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6490_PI429285431	5.922913	P	6.084358	P	0.894129064690839	0	lncRNA	6432-1_{1..1749}	"transcript_id ""ENST00000590622.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000590622.1"" | genecode_v17"	chr19	 36810618	 36812366	-	ENSG00000232677.2	ENST00000590622.1	LINC00665	LINC00665-006	ZFP14	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.01;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80chr19:36825355-36832620"	NA	inter
CUST_28945_PI429285431	2.0534043	A	1.1713825	A	1.842956220377	0	lncRNA	30665-1_{1..2254}	n326374|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039103|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039103|-0.2993430|-0.3046266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326374|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039103|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039103|-0.2993430|-0.3046266	chr1	151413617	151415870	+	NA	NA	NA	NA	POGZ	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-17.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.41;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-21.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.30chr1:151403617-151431941"	NA	inner
CUST_7049_PI429285431	1.0065168	A	0.9666868	A	1.02799268597947	0	lncRNA	6994-1_{1..2228}	"transcript_id ""ENST00000440955.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440955.1"" | genecode_v17"	chrX	 43036243	 43038470	+	ENSG00000224294.1	ENST00000440955.1	RP3-326I13.1	RP3-326I13.1-001	NA	NA	NA	inter
CUST_51750_PI429285431	0.89078206	A	1.2667453	A	0.770590742830019	0	lncRNA	55303-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00012523 range=chr19:37747982-37759148 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012523 range=chr19:37747982-37759148 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 37747982	 37750981	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
LNCA_21_P0001426	9.845881	P	9.843687	P	1.00152192186352	0	lncRNA	TCONS_00001294	NA	NA	NA	NA	XLOC_000578	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000578), lincRNA [TCONS_00001294]"	chr1:223316862-223316921	hs|1q41	Agilent_HUMAN_G3V2	TCONS_00001294	TCONS_00001294	chr1	223316862	223316921	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10998_PI429285431	0.89080685	A	0.8937181	A	0.997984109911887	0	lncRNA	12543-1_{1..720}	lnc-ABI3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABI3-2:2	chr17	 47332552	 47333271	+	lnc-ABI3-2	lnc-ABI3-2:2	XLOC_012230	linc-NGFR-3	NA	NA	NA	inter
LNCA_21_P0005620	1.9812479	A	3.132832	P	0.450130709836025	0	lncRNA	ENST00000520842	NA	AK128880	NA	NA	XLOC_006980	NA	ENST00000520842	THC2636008	NA	"BROAD Institute lincRNA (XLOC_006980), lincRNA [TCONS_00015396]"	chr8:2562800-2554468	hs|8p23.2	Agilent_HUMAN_G3V2	ENST00000520842	ENST00000520842	chr8	  2554468	  2562800	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23138_PI429285431	6.661341	P	7.149007	P	0.71317794822417	0	lncRNA	24709-1_{1..206}	lnc-FGF3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FGF3-4:1	chr11	 70323675	 70323880	-	lnc-FGF3-4	lnc-FGF3-4:1	ENSG00000227726.1	AP001271.3	SHANK2	NA	chr11:70313961-70333697	inner
CUST_44511_PI429285431	8.788603	P	6.9331	P	3.61877898858831	0	lncRNA	49110-1_{1..2684}	"gi|386642865|ref|NR_047678.1| Homo sapiens threonyl-tRNA synthetase (TARS), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386642865|ref|NR_047678.1| Homo sapiens threonyl-tRNA synthetase (TARS), transcript variant 6, non-coding RNA"	Chr5	 33440882	 33443565	+	6897	NR_047678.1	NA	NA	NA	NA	NA	inter
CUST_35411_PI429285431	1.0037886	A	1.7480596	A	0.596969446540965	0	lncRNA	36821-2_{3001..3486}	n342472|U37028|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4966|NULL|15.3925000|-0.0586384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342472|U37028|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4966|NULL|15.3925000|-0.0586384	chr16	 31407681	 31408166	+	NA	NA	NA	NA	ITGAD	NA	chr16:31404633-31437826	inner
CUST_50536_PI429285431	0.90612936	A	0.90927225	A	0.997823885834713	0	lncRNA	54230-1_{1..1214}	hg19_lincRNAsTranscripts_TCONS_l2_00030395 range=chrX:149183784-149185303 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030395 range=chrX:149183784-149185303 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	149183784	149184997	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8238_PI429285431	2.2308273	A	2.9221158	A	0.619300493154737	0	lncRNA	9828-1_{1..1985}	lnc-FKBP3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FKBP3-3:1	chr14	 45431673	 45433657	-	lnc-FKBP3-3	lnc-FKBP3-3:1	ENSG00000249511	ENST00000513198	FAM179B	"hg19_refFlat_FAM179B:range=chr14:45431625-455427645'pad=0,hg19_refFlat_FAM179B:range=chr14:45431625-455427645'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10chr14:45431416-45443580"	NA	inner
CUST_38087_PI429285431	0.9168751	A	0.9384611	A	0.985149103613007	0	lncRNA	39163-1_{1..2178}	n381082|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001bhf.1||0.1274020|-0.2256355	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381082|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001bhf.1||0.1274020|-0.2256355	chr1	 23853364	 23855541	+	NA	NA	NA	NA	E2F2	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30chr1:23843364-23857712"	NA	inner
CUST_51809_PI429285431	7.19309	P	7.2832413	P	0.939424223652934	0	lncRNA	55359-1_{1..302}	hg19_lincRNAsTranscripts_TCONS_l2_00012946 range=chr19:23171145-23186022 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012946 range=chr19:23171145-23186022 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 23171145	 23171446	-	NA	NA	NA	NA	ZNF728	NA	chr19:23161145-23186010	inner
CUST_15636_PI429285431	3.9390266	P	3.8820446	P	1.04028728714142	0	lncRNA	17326-1_{1..527}	lnc-ARID2-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARID2-3:5	chr12	 46781530	 46782056	+	lnc-ARID2-3	lnc-ARID2-3:5	XLOC_009723	linc-FAM113B-3	NA	NA	NA	inter
CUST_23406_PI429285431	0.8906919	A	0.8998983	A	0.993638927625717	0	lncRNA	24974-1_{1..416}	lnc-LRP1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRP1B-1:1	chr2	142895333	142895748	-	lnc-LRP1B-1	lnc-LRP1B-1:1	ENSG00000244125.1	AC078882.1	LRP1B	NA	chr2:142885333-142889270	inter
CUST_6148_PI429285431	3.3590043	P	3.5677242	P	0.865304673634371	0	lncRNA	6074-1_{1..697}	"transcript_id ""ENST00000591141.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591141.1"" | genecode_v17"	chr18	 33025707	 33026403	-	ENSG00000267583.1	ENST00000591141.1	RP11-322E11.5	RP11-322E11.5-002	INO80C	NA	chr18:33048291-33057045	inter
CUST_9394_PI429285431	1.3461012	A	1.0445436	A	1.23247433133701	0	lncRNA	10898-1_{1..556}	lnc-AC018682.6.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC018682.6.1-1:1	chr2	 46671183	 46671738	+	lnc-AC018682.6.1-1	lnc-AC018682.6.1-1:1	XLOC_001455	linc-LOC388946	NA	NA	NA	inter
CUST_50538_PI429285431	6.467084	P	6.74191	P	0.826550000362482	0	lncRNA	54232-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030632 range=chrX:152583139-152587121 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030632 range=chrX:152583139-152587121 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	152583139	152586138	-	NA	NA	NA	NA	LOC649201	NA	chrX:152584396-152587591	inter
LNCA_19_P00317201	7.301742	P	7.366588	P	0.956047365103614	0	lncRNA	AK124820	NA	AK124820	NA	Hs.708523	LOC100129936	uncharacterized LOC100129936	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014327), lincRNA [TCONS_00029347]"	chr22:27064054-27063995	hs|22q12.1	Agilent_HUMAN_G3V2	AK124820	AK124820	chr22	 27063995	 27064054	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25153_PI429285431	1.0626619	A	1.9268637	A	0.549350261891917	0	lncRNA	26691-1_{1..466}	lnc-LIFR-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIFR-3:1	chr5	 38403501	 38403966	-	lnc-LIFR-3	lnc-LIFR-3:1	ENSG00000248572.1	EGFLAM-AS2	EGFLAM	NA	chr5:38393501-38413515	inner
LNCA_21_P0008671	4.784867	P	4.7612185	P	1.01652697523185	0	lncRNA	TCONS_00023502	NA	NA	NA	NA	XLOC_011346	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011346), lincRNA [TCONS_00023502]"	chr15:89980997-89981056	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00023502	TCONS_00023502	chr15	 89980997	 89981056	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25974_PI429285431	5.499279	P	5.866164	P	0.775455016896193	0	lncRNA	27494-1_{1..484}	lnc-SRGAP3-1:26	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRGAP3-1:26	chr3	  9404524	  9405007	-	lnc-SRGAP3-1	lnc-SRGAP3-1:26	ENSG00000254485.1	RP11-380O24.1	THUMPD3	NA	chr3:9404717-9414625	inter
CUST_21369_PI429285431	1.8657768	A	2.3663597	A	0.706821142658571	0	lncRNA	22991-2_{3001..4763}	lnc-STOM-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STOM-2:1	chr9	124046046	124047808	-	lnc-STOM-2	lnc-STOM-2:1	ENSG00000235865.2	GSN-AS1	LOC100128064	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_GSN:range=chr9:124044730-1240948815'pad=0,hg19_refFlat_GSN:range=chr9:124044730-1240948815'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40chr9:124042136-124049119"	NA	inner
CUST_6357_PI429285431	0.9277868	A	0.93241006	A	0.996800529614886	0	lncRNA	6282-1_{1..544}	"transcript_id ""ENST00000546512.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546512.1"" | genecode_v17"	chr19	 16126097	 16126640	+	ENSG00000205396.6	ENST00000546512.1	LINC00661	LINC00661-006	NA	NA	NA	inter
CUST_1598_PI429285431	5.4152784	P	6.20927	P	0.576746160588026	0	lncRNA	1584-1_{1..536}	"transcript_id ""ENST00000450760.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450760.1"" | genecode_v17"	chr3	187461474	187462009	+	ENSG00000223401.1	ENST00000450760.1	RP11-211G3.2	RP11-211G3.2-001	BCL6	NA	chr3:187451474-187463513	inner
CUST_51538_PI429285431	3.3357854	P	3.5953805	P	0.835322324165345	0	lncRNA	55105-1_{1..338}	hg19_lincRNAsTranscripts_TCONS_l2_00010508 range=chr17:2659041-2675976 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010508 range=chr17:2659041-2675976 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	  2659041	  2659378	+	NA	NA	NA	NA	NA	"hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00"	NA	inter
LNCA_21_P0007309	8.975157	P	8.986015	P	0.9925020587789	0	lncRNA	TCONS_00019550	NA	NA	NA	NA	XLOC_009345	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009345), lincRNA [TCONS_00019550]"	chr11:134585793-134585852	hs|11q25	Agilent_HUMAN_G3V2	TCONS_00019550	TCONS_00019550	chr11	134585793	134585852	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18498_PI429285431	2.729364	A	2.4286904	A	1.23171937373842	0	lncRNA	20214-2_{3001..6000}	lnc-SHROOM4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHROOM4-1:2	chrX	 50216033	 50219032	-	lnc-SHROOM4-1	lnc-SHROOM4-1:2	ENSG00000204466	DGKK	DGKK	NA	chrX:50203033-50213721	inner
CUST_25830_PI429285431	0.92227817	A	0.9119619	A	1.00717632072071	0	lncRNA	27351-1_{1..356}	lnc-A2LD1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-A2LD1-1:2	chr13	101133234	101133589	-	lnc-A2LD1-1	lnc-A2LD1-1:2	ENSG00000234650.1	PCCA-AS1	PCCA	NA	chr13:101123234-101143269	inner
LNCA_21_P0004846	2.5601804	A	2.804991	A	0.843926581291388	0	lncRNA	TCONS_00011706	NA	NA	NA	NA	XLOC_005185	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005185), lincRNA [TCONS_00011706]"	chr6:16152957-16153016	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00011706	TCONS_00011706	chr6	 16152957	 16153016	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3868_PI429285431	1.5579498	A	1.1370275	A	1.33878315147506	0	lncRNA	3837-1_{1..528}	"transcript_id ""ENST00000530418.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530418.1"" | genecode_v17"	chr11	 15932503	 15933030	+	ENSG00000254661.2	ENST00000530418.1	RP11-222N13.1	RP11-222N13.1-001	NA	NA	NA	inter
CUST_14478_PI429285431	0.9168023	A	1.124938	A	0.865655138105219	0	lncRNA	16143-1_{1..3000}	lnc-LRPAP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-LRPAP1-3:1	chr4	  3761872	  3764871	-	lnc-LRPAP1-3	lnc-LRPAP1-3:1	XLOC_003862	linc-LRPAP1-2	ADRA2C	NA	chr4:3768296-3770253	inter
CUST_9840_PI429285431	0.9680117	A	2.279583	A	0.402881844964102	0	lncRNA	11360-1_{1..330}	lnc-AC008394.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC008394.1-1:1	chr5	 86369997	 86370326	-	lnc-AC008394.1-1	lnc-AC008394.1-1:1	XLOC_004913	linc-EDIL3-1	NA	NA	NA	inter
CUST_6859_PI429285431	1.2740916	A	1.1525283	A	1.08791308339216	0	lncRNA	6808-1_{1..751}	"transcript_id ""ENST00000585273.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585273.1"" | genecode_v17"	chr21	 38580804	 38581554	+	ENSG00000230366.5	ENST00000585273.1	DSCR9	DSCR9-003	TTC3	NA	chr21:38570804-38575408	inter
CUST_19007_PI429285431	0.8973798	A	0.8993058	A	0.99866588924829	0	lncRNA	20697-1_{1..430}	lnc-ASAH2C-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ASAH2C-1:2	chr10	 47640618	 47641047	-	lnc-ASAH2C-1	lnc-ASAH2C-1:2	ENSG00000243536	RP11-292F22.6	NA	NA	NA	inter
CUST_16048_PI429285431	1.0150139	A	1.042124	A	0.981384166167761	0	lncRNA	17747-1_{1..1155}	lnc-ROBO2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ROBO2-5:1	chr3	 81144263	 81145417	+	lnc-ROBO2-5	lnc-ROBO2-5:1	XLOC_002717	linc-CADM2-7	NA	NA	NA	inter
CUST_16176_PI429285431	0.89285827	A	0.8985323	A	0.996074785974185	0	lncRNA	17881-2_{3001..4818}	lnc-MANEA-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MANEA-3:6	chr6	 94456834	 94458651	+	lnc-MANEA-3	lnc-MANEA-3:6	XLOC_005392	linc-MANEA-3	NA	NA	NA	inter
CUST_25307_PI429285431	0.9162705	A	0.92236197	A	0.995786616058057	0	lncRNA	26837-1_{1..403}	lnc-MRPS7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPS7-2:1	chr17	 73369374	 73369776	+	lnc-MRPS7-2	lnc-MRPS7-2:1	ENSG00000265987.1	RP11-16C1.3	GRB2	NA	chr17:73359374-73379743	inner
CUST_50095_PI429285431	3.9849563	P	4.3225117	P	0.791381146099362	0	lncRNA	53827-2_{3001..3298}	hg19_lincRNAsTranscripts_TCONS_l2_00028016 range=chr8:144868909-144872708 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028016 range=chr8:144868909-144872708 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	144871909	144872206	+	NA	NA	NA	NA	SCRIB	NA	chr8:144873090-144882708	inter
CUST_39148_PI429285431	0.8962784	A	0.9066003	A	0.992870937308592	0	lncRNA	40123-1_{1..2044}	n385781|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ebh.1||3.1458400|-0.2359671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385781|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ebh.1||3.1458400|-0.2359671	chrX	 72345875	 72347918	-	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-62.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60"	NA	inter
CUST_17670_PI429285431	1.5041393	A	0.8982783	A	1.52188674385614	0	lncRNA	19398-1_{1..701}	lnc-PRDM4-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRDM4-3:3	chr12	108239740	108240440	-	lnc-PRDM4-3	lnc-PRDM4-3:3	XLOC_010191	linc-PRDM4-2	NA	NA	NA	inter
LNCA_21_P0003074	0.9046345	A	0.90470415	A	0.999951723464223	0	lncRNA	TCONS_00006340	NA	NA	NA	NA	XLOC_002956	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002956), lincRNA [TCONS_00006340]"	chr3:185544883-185545046	hs|3q27.2	Agilent_HUMAN_G3V2	TCONS_00006340	TCONS_00006340	chr3	185544883	185545046	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003788	0.90412074	A	0.9041414	A	0.999985679681786	0	lncRNA	TCONS_00008630	NA	NA	NA	NA	XLOC_004134	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004134), lincRNA [TCONS_00008630]"	chr4:157033901-157033842	hs|4q32.1	Agilent_HUMAN_G3V2	TCONS_00008630	TCONS_00008630	chr4	157033842	157033901	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49069_PI429285431	5.539253	P	5.443629	P	1.0685274717198	0	lncRNA	52894-1_{1..1149}	hg19_lincRNAsTranscripts_TCONS_l2_00021025 range=chr4:3944093-3957129 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021025 range=chr4:3944093-3957129 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  3944093	  3945241	-	NA	NA	NA	NA	NA	"hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30;hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30;hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30"	NA	inter
LNCA_21_P0006367	0.90277475	A	0.90235126	A	1.00029358398684	0	lncRNA	TCONS_00016675	NA	NA	NA	NA	XLOC_007536	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007536), lincRNA [TCONS_00016675]"	chr9:120522587-120522646	hs|9q33.1	Agilent_HUMAN_G3V2	TCONS_00016675	TCONS_00016675	chr9	120522587	120522646	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18333_PI429285431	1.2663795	A	1.2300413	A	1.0255076116444	0	lncRNA	20062-1_{1..677}	lnc-METAP1-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-METAP1-3:7	chr4	100222108	100222784	+	lnc-METAP1-3	lnc-METAP1-3:7	ENSG00000246090	RP11-696N14.1	ADH1A	NA	chr4:100212108-100212185	inter
CUST_37142_PI429285431	0.9078899	A	0.91076356	A	0.998010113128337	0	lncRNA	38262-2_{3001..6000}	n345580|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1129|NULL|-1.6015200|-0.2891391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345580|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1129|NULL|-1.6015200|-0.2891391	chr3	 42059195	 42062194	+	NA	NA	NA	NA	LOC100287063	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-8.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chr3:42046195-42125985"	NA	inter
CUST_23712_PI429285431	1.7105769	A	2.707748	A	0.500981383885479	0	lncRNA	25277-1_{1..344}	lnc-TMEM178-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM178-2:7	chr2	 40481560	 40481903	+	lnc-TMEM178-2	lnc-TMEM178-2:7	ENSG00000227028.1	AC007254.3	SLC8A1	NA	chr2:40471560-40491686	inner
CUST_23966_PI429285431	0.8892187	A	0.93295586	A	0.970138640701573	0	lncRNA	25521-1_{1..567}	lnc-PWP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PWP1-1:1	chr12	108131799	108132365	+	lnc-PWP1-1	lnc-PWP1-1:1	ENSG00000258136.1	RP11-864J10.4	PRDM4	NA	chr12:108126643-108142225	inner
CUST_1570_PI429285431	0.8928617	A	1.3294921	A	0.738858293582925	0	lncRNA	1558-1_{1..193}	"transcript_id ""ENST00000603299.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603299.1"" | genecode_v17"	chr3	177671854	177672046	-	ENSG00000270321.1	ENST00000603299.1	RP11-2L8.2	RP11-2L8.2-001	NA	NA	NA	inter
CUST_5851_PI429285431	7.1582217	P	7.2007184	P	0.970973145329895	0	lncRNA	5780-1_{1..425}	"transcript_id ""ENST00000586351.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586351.1"" | genecode_v17"	chr17	 40306618	 40307042	+	ENSG00000267658.1	ENST00000586351.1	RP11-358B23.1	RP11-358B23.1-001	KCNH4	NA	chr17:40308910-40317990	inner
CUST_47835_PI429285431	9.44858	P	9.431768	P	1.0117213533374	0	lncRNA	51742-1_{1..892}	"gi|397140193|ref|XR_159171.1| PREDICTED: Homo sapiens uncharacterized LOC100132999 (LOC100132999), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397140193|ref|XR_159171.1| PREDICTED: Homo sapiens uncharacterized LOC100132999 (LOC100132999), misc_RNA"	NA	NA	NA	NA	NA	XR_159171.1	NA	NA	NA	"hg19_refFlat_PARP8:range=chr5:49962930-501379025'pad=0,hg19_refFlat_PARP8:range=chr5:49962930-501379025'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	Unknown
CUST_22049_PI429285431	1.6544495	A	1.6365974	A	1.01245100912859	0	lncRNA	23657-1_{1..1620}	lnc-CD99L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CD99L2-1:1	chrX	150345849	150347468	-	lnc-CD99L2-1	lnc-CD99L2-1:1	ENSG00000234696.1	GPR50-AS1	GPR50	"hg19_refFlat_GPR50:range=chrX:150345194-1503499095'pad=0,hg19_refFlat_GPR50:range=chrX:150345194-1503499095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70chrX:150345056-150349937"	NA	inner
CUST_48126_PI429285431	0.88708776	A	0.8863281	A	1.00052669484223	0	lncRNA	51995-1_{1..3000}	"gi|397137277|ref|XR_159201.1| PREDICTED: Homo sapiens uncharacterized LOC100506255 (LOC100506255), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397137277|ref|XR_159201.1| PREDICTED: Homo sapiens uncharacterized LOC100506255 (LOC100506255), misc_RNA"	NA	NA	NA	NA	NA	XR_159201.1	NA	NA	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RPS10-NUDT3:range=chr6:34256530-343929985'pad=0,hg19_refFlat_RPS10-NUDT3:range=chr6:34256530-343929985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RPS10:range=chr6:34385283-343929985'pad=0,hg19_refFlat_RPS10:range=chr6:34385283-343929985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10"	NA	Unknown
CUST_20634_PI429285431	7.6532426	P	7.3979626	P	1.19356736955378	0	lncRNA	22273-1_{1..441}	lnc-AKIRIN1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AKIRIN1-1:2	chr1	 39341613	 39342053	+	lnc-AKIRIN1-1	lnc-AKIRIN1-1:2	ENSG00000228436.1	RP5-864K19.4	MYCBP	"hg19_refFlat_GJA9:range=chr1:39340223-393417705'pad=0,hg19_refFlat_GJA9:range=chr1:39340223-393417705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60chr1:39331613-39339050"	NA	inter
CUST_24063_PI429285431	8.456539	P	8.46258	P	0.995821452408205	0	lncRNA	25613-1_{1..486}	lnc-UBAP2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBAP2-3:2	chr9	 33738286	 33738771	-	lnc-UBAP2-3	lnc-UBAP2-3:2	ENSG00000233776.1	RP11-384P7.6	NA	NA	NA	inter
CUST_6429_PI429285431	2.0015864	A	2.5654197	A	0.676502279247672	0	lncRNA	6369-1_{1..240}	"transcript_id ""ENST00000590167.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590167.1"" | genecode_v17"	chr19	 29440344	 29440583	-	ENSG00000267027.1	ENST00000590167.1	AC011524.2	AC011524.2-001	NA	NA	NA	inter
CUST_31480_PI429285431	1.352552	A	1.8200581	A	0.723213693773095	0	lncRNA	33246-1_{1..2298}	n337960|AK124655|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|345|NULL|-0.1514020|-0.2565417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337960|AK124655|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|345|NULL|-0.1514020|-0.2565417	chr1	 55176389	 55178686	+	NA	NA	NA	NA	TTC4	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-65.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_TSPAN16:range=chr19:11406974-114375205'pad=0,hg19_refFlat_TSPAN16:range=chr19:11406974-114375205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-62.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-23.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0,hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70chr1:55181495-55188687"	NA	inter
CUST_6389_PI429285431	0.89144367	A	1.0482792	A	0.896990412459756	0	lncRNA	6318-1_{1..471}	"transcript_id ""ENST00000598561.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598561.1"" | genecode_v17"	chr19	 21951574	 21952044	-	ENSG00000268184.1	ENST00000598561.1	RP11-420K14.8	RP11-420K14.8-001	ZNF43	NA	chr19:21983282-21986433	inter
CUST_31431_PI429285431	1.4274126	A	2.2426426	A	0.56831787597077	0	lncRNA	33202-1_{1..2204}	n337900|AK097620|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|283|NULL|-0.6873160|-0.1715862	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337900|AK097620|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|283|NULL|-0.6873160|-0.1715862	chr1	 43901378	 43903581	-	NA	NA	NA	NA	SZT2	"hg19_refFlat_SZT2:range=chr1:43855640-439161515'pad=0,hg19_refFlat_SZT2:range=chr1:43855640-439161515'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.10chr1:43891378-43913582"	NA	inner
CUST_21997_PI429285431	1.50623	A	0.9284365	A	1.4925647299141	0	lncRNA	23606-1_{1..574}	lnc-C15orf54-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C15orf54-3:1	chr15	 39316844	 39317417	+	lnc-C15orf54-3	lnc-C15orf54-3:1	ENSG00000259278.1	RP11-62C7.2	NA	NA	NA	inter
CUST_14679_PI429285431	1.4923553	A	2.2671924	A	0.584454613473706	0	lncRNA	16347-1_{1..916}	lnc-MGMT-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MGMT-3:1	chr10	131165973	131166888	+	lnc-MGMT-3	lnc-MGMT-3:1	XLOC_008665	linc-MGMT-1	NA	NA	NA	inter
CUST_30031_PI429285431	0.8976451	A	0.88883317	A	1.00612665608616	0	lncRNA	31800-1_{1..219}	n334504|U31737|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219158|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219158|-1.2810800|-0.4991723	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334504|U31737|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219158|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219158|-1.2810800|-0.4991723	chrX	133627611	133627829	+	NA	NA	NA	NA	HPRT1	NA	chrX:133617611-133634698	inner
CUST_6537_PI429285431	4.767676	P	4.710488	P	1.04043583862008	0	lncRNA	6480-1_{1..460}	"transcript_id ""ENST00000590022.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590022.1"" | genecode_v17"	chr19	 45741890	 45742349	-	ENSG00000267045.1	ENST00000590022.1	AC006126.4	AC006126.4-001	MARK4	NA	chr19:45737453-45758628	inter
CUST_19003_PI429285431	1.9956119	A	2.7427993	A	0.595763895043851	0	lncRNA	20693-1_{1..989}	lnc-PZP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PZP-2:1	chr12	  9420595	  9421583	-	lnc-PZP-2	lnc-PZP-2:1	ENSG00000256069	RP11-118B22.6	NA	NA	NA	inter
LNCA_21_P0002149	5.6146975	P	6.3868475	P	0.585544207196926	0	lncRNA	ENST00000457178	NA	NA	NA	NA	XLOC_002542	NA	ENST00000457178	NA	NA	"BROAD Institute lincRNA (XLOC_002542), lincRNA [TCONS_00003521]"	chr2:241168065-241167110	hs|2q37.3	Agilent_HUMAN_G3V2	ENST00000457178	ENST00000457178	chr2	241167110	241168065	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43169_PI429285431	1.9175647	A	0.9002708	A	2.02411870533391	0	lncRNA	47983-1_{1..720}	ENST00000585877 havana:sense_intronic chromosome:GRCh37:18:12670425:12671144:-1 gene:ENSG00000267249 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585877 havana:sense_intronic chromosome:GRCh37:18:12670425:12671144:-1 gene:ENSG00000267249 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr18	 12670425	 12671144	-	ENSG00000267249	ENST00000585877	NA	NA	PSMG2	"hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10chr18:12660425-12681144"	NA	inner
CUST_12156_PI429285431	5.707147	P	5.6972914	P	1.00685476846341	0	lncRNA	13756-1_{1..3000}	lnc-TPM4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TPM4-2:2	chr19	 16135931	 16138930	+	lnc-TPM4-2	lnc-TPM4-2:2	XLOC_012983	linc-TPM4-2	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20"	NA	inter
CUST_7386_PI429285431	5.136878	P	4.9158115	P	1.16559492416387	0	lncRNA	9032-1_{1..566}	lnc-SHPRH-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SHPRH-2:6	chr6	147440553	147441118	-	lnc-SHPRH-2	lnc-SHPRH-2:6	ENSG00000233452	RP11-497D6.4	NA	NA	NA	inter
CUST_44408_PI429285431	0.8892025	A	1.0082735	A	0.920780381310883	0	lncRNA	49023-1_{1..1695}	"gi|260656058|ref|NR_029373.1| Homo sapiens LEF1 antisense RNA 1 (LEF1-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|260656058|ref|NR_029373.1| Homo sapiens LEF1 antisense RNA 1 (LEF1-AS1), transcript variant 1, non-coding RNA"	Chr4	109093276	109094970	+	641518	NR_029373.1	NA	NA	NA	NA	NA	inter
CUST_16065_PI429285431	6.5710607	P	6.5391474	P	1.02236708873374	0	lncRNA	17768-1_{1..297}	lnc-PTGER3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTGER3-2:1	chr1	 71114347	 71114643	-	lnc-PTGER3-2	lnc-PTGER3-2:1	XLOC_000868	linc-ANKRD13C-1	NA	NA	NA	inter
CUST_5061_PI429285431	6.79179	P	7.02125	P	0.852954092297014	0	lncRNA	5001-1_{1..509}	"transcript_id ""ENST00000556528.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556528.1"" | genecode_v17"	chr14	104689931	104690439	+	ENSG00000258913.1	ENST00000556528.1	RP11-260M19.2	RP11-260M19.2-002	NA	NA	NA	inter
CUST_40185_PI429285431	7.013104	P	7.1867723	P	0.886585516774563	0	lncRNA	41019-1_{1..1691}	n407966|NR_027681|lncRNA|Homosapiens||RefGeneNoncode|NR_027681||3.1201000|-0.1848063	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407966|NR_027681|lncRNA|Homosapiens||RefGeneNoncode|NR_027681||3.1201000|-0.1848063	chr17	  5322960	  5324650	+	NA	NA	NA	NA	RPAIN	NA	chr17:5322961-5336340	inner
CUST_30583_PI429285431	1.5614699	A	0.908247	A	1.57267754813409	0	lncRNA	32365-1_{1..333}	n335847|X58740|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322246|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322246|-0.6156850|-0.0864040	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335847|X58740|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322246|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322246|-0.6156850|-0.0864040	chr14	 22771928	 22772260	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47033_PI429285431	0.900815	A	0.89968807	A	1.00078143351239	0	lncRNA	51123-1_{1..639}	"gi|378548191|ref|NR_046376.1| Homo sapiens uncharacterized LOC100128568 (LOC100128568), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378548191|ref|NR_046376.1| Homo sapiens uncharacterized LOC100128568 (LOC100128568), non-coding RNA"	Chr19	  5978414	  5979052	+	100128568	NR_046376.1	NA	NA	NA	NA	NA	inter
CUST_12091_PI429285431	1.828413	A	1.2867442	A	1.4556553353385	0	lncRNA	13685-1_{1..368}	lnc-HSPB8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HSPB8-1:1	chr12	119612167	119612534	+	lnc-HSPB8-1	lnc-HSPB8-1:1	XLOC_009908	linc-HSPB8	HSPB8	NA	chr12:119616595-119622391	inter
CUST_1320_PI429285431	1.0128552	A	0.96810234	A	1.03150646257593	0	lncRNA	1309-1_{1..837}	"transcript_id ""ENST00000594183.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594183.1"" | genecode_v17"	chr3	 24540116	 24540952	+	ENSG00000228791.2	ENST00000594183.1	THRB-AS1	THRB-AS1-003	THRB	NA	chr3:24530116-24536313	inter
CUST_10945_PI429285431	7.370627	P	7.4764485	P	0.929275643413792	0	lncRNA	12486-1_{1..932}	lnc-TMEM116-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TMEM116-2:12	chr12	112279488	112280419	-	lnc-TMEM116-2	lnc-TMEM116-2:12	XLOC_010202	linc-BRAP-2	MAPKAPK5	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90chr12:112280279-112289710"	NA	inter
CUST_20035_PI429285431	0.91258425	A	0.9143361	A	0.998786447063381	0	lncRNA	21686-2_{3001..3563}	lnc-ALK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALK-1:1	chr2	 30366506	 30367068	-	lnc-ALK-1	lnc-ALK-1:1	ENSG00000233862.1	AC016907.3	YPEL5	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30chr2:30369750-30376670"	NA	inter
CUST_19987_PI429285431	7.1846914	P	7.7386484	P	0.681149318897082	0	lncRNA	21640-1_{1..1039}	lnc-TIMM9-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMM9-2:10	chr14	 58764673	 58765711	-	lnc-TIMM9-2	lnc-TIMM9-2:10	ENSG00000257621.2	RP11-349A22.5	ARID4A	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60chr14:58754673-58774820"	NA	inter
CUST_10796_PI429285431	4.065065	P	4.1081424	P	0.970582397023333	0	lncRNA	12333-1_{1..1485}	lnc-HS3ST2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-HS3ST2-2:2	chr16	 23034284	 23035768	+	lnc-HS3ST2-2	lnc-HS3ST2-2:2	XLOC_011672	linc-SCNN1G-1	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90"	NA	inter
LNCA_21_P0009020	2.0941372	A	2.3883939	A	0.81549237915157	0	lncRNA	TCONS_00024611	NA	NA	NA	NA	XLOC_011900	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011900), lincRNA [TCONS_00024611]"	chr16:22934779-22934720	hs|16p12.2	Agilent_HUMAN_G3V2	TCONS_00024611	TCONS_00024611	chr16	 22934720	 22934779	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1744_PI429285431	0.8856425	A	0.8866941	A	0.999271352017888	0	lncRNA	1730-1_{1..2059}	"transcript_id ""ENST00000512517.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512517.1"" | genecode_v17"	chr4	 38422283	 38424341	-	ENSG00000249534.1	ENST00000512517.1	RP11-83C7.2	RP11-83C7.2-001	NA	NA	NA	inter
CUST_39691_PI429285431	5.529851	P	5.069261	P	1.37610447041261	0	lncRNA	40631-1_{1..667}	n405456|NR_002208|lncRNA|Homosapiens||RefGeneNoncode|NR_002208||1.6510700|-0.4039322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405456|NR_002208|lncRNA|Homosapiens||RefGeneNoncode|NR_002208||1.6510700|-0.4039322	chr15	 40824082	 40824748	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_72_PI429201921	9.616217	P	9.911985	P	0.81463855468237	0	lncRNA	74-1_{1..2143}	TC17002256.hg.1	 TCONS_00025176-XLOC_012227 // Rinn lincRNAs // linc-CALCOCO2-2 chr17:+:46782622-46783692 // chr17 // 100 // 100 // 0 // --- // 0///TCONS_00025175-XLOC_012227 // Rinn lincRNAs // linc-CALCOCO2-2 chr17:+:46782564-46784708 // chr17 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr17:+:46782564-46784708	NA	Affy_HUMAN_HTA2.0	TCONS_00025175-XLOC_012227	linc-CALCOCO2-2	chr17	 46782564	 46784708	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014654	0.90935576	A	0.90249026	A	1.00477014304907	0	lncRNA	XR_110913	XR_110913	XR_110913	NA	NA	LOC100507609	uncharacterized LOC100507609	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507609 (LOC100507609), miscRNA [XR_110913]"	chr11:64721397-64721456	hs|11q13.1	Agilent_HUMAN_G3V2	XR_110913	XR_110913	chr11	 64721397	 64721456	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43617_PI429285431	3.6143613	P	3.5400844	P	1.05283320818012	0	lncRNA	48379-1_{1..1617}	"gi|343098449|ref|NR_040772.1| Homo sapiens uncharacterized LOC100505666 (LOC100505666), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|343098449|ref|NR_040772.1| Homo sapiens uncharacterized LOC100505666 (LOC100505666), transcript variant 1, non-coding RNA"	Chr1	155017667	155019283	-	100505666	NR_040772.1	NA	NA	NA	"hg19_refFlat_DCST1:range=chr1:155006513-1550233445'pad=0,hg19_refFlat_DCST1:range=chr1:155006513-1550233445'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.60"	NA	inter
CUST_41947_PI429285431	0.90781933	A	1.2451862	A	0.791484569783694	0	lncRNA	43710-1_{1..70}	ENST00000583434 ncrna:miRNA chromosome:GRCh37:6:141004951:141005020:1 gene:ENSG00000264390 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583434 ncrna:miRNA chromosome:GRCh37:6:141004951:141005020:1 gene:ENSG00000264390 gene_biotype:miRNA transcript_biotype:miRNA	chr6	141004951	141005020	+	ENSG00000264390	ENST00000583434	NA	NA	NA	NA	NA	inter
CUST_1583_PI429285431	1.6516292	A	1.7506082	A	0.933693535744276	0	lncRNA	1569-1_{1..713}	"transcript_id ""ENST00000600750.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600750.1"" | genecode_v17"	chr3	181670137	181670849	+	ENSG00000242512.3	ENST00000600750.1	RP11-416O18.1	RP11-416O18.1-006	NA	NA	NA	inter
CUST_20161_PI429285431	3.706459	P	3.7110472	P	0.996824753896683	0	lncRNA	21806-1_{1..1952}	lnc-VTI1A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VTI1A-3:1	chr10	114845077	114847028	+	lnc-VTI1A-3	lnc-VTI1A-3:1	ENSG00000237996.1	RP11-258A12.3	TCF7L2	NA	chr10:114835077-114856535	inner
LNCA_21_P0009578	9.69471	P	9.82101	P	0.916178110983499	0	lncRNA	TCONS_00026559	NA	NA	NA	NA	XLOC_012880	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012880), lincRNA [TCONS_00026559]"	chr18:71266115-71266056	hs|18q22.3	Agilent_HUMAN_G3V2	TCONS_00026559	TCONS_00026559	chr18	 71266056	 71266115	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20520_PI429285431	7.628127	P	8.156294	P	0.693435210925275	0	lncRNA	22162-1_{1..398}	lnc-TIMM9-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMM9-2:11	chr14	 58764673	 58765070	-	lnc-TIMM9-2	lnc-TIMM9-2:11	ENSG00000257621.2	RP11-349A22.5	ARID4A	NA	chr14:58754673-58774802	inter
CUST_13191_PI429285431	1.5903751	A	2.5752387	A	0.505273492206669	0	lncRNA	14818-1_{1..1148}	lnc-SUCLG1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUCLG1-2:1	chr2	 83094967	 83096114	-	lnc-SUCLG1-2	lnc-SUCLG1-2:1	XLOC_002185	linc-LRRTM1-6	NA	NA	NA	inter
CUST_16288_PI429285431	0.91135275	A	1.4428464	A	0.691838089824326	0	lncRNA	17995-1_{1..1016}	lnc-DTNBP1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DTNBP1-2:3	chr6	 15757866	 15758881	-	lnc-DTNBP1-2	lnc-DTNBP1-2:3	XLOC_005621	linc-DTNBP1-1	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10"	NA	inter
LNCA_21_P0001356	2.3190176	A	2.9346223	A	0.652656277872428	0	lncRNA	TCONS_00001082	NA	NA	NA	NA	XLOC_000322	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000322), lincRNA [TCONS_00001082]"	chr1:103143114-103145365	hs|1p21.1	Agilent_HUMAN_G3V2	TCONS_00001082	TCONS_00001082	chr1	103143114	103145365	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10173_PI429285431	7.2650046	P	6.3956246	P	1.82687762878702	0	lncRNA	11698-1_{1..434}	lnc-RP11-150O12.6.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-150O12.6.1-1:3	chr8	 37386615	 37387048	-	lnc-RP11-150O12.6.1-1	lnc-RP11-150O12.6.1-1:3	XLOC_007054	linc-DUSP26-6	NA	NA	NA	inter
CUST_1133_PI429285431	1.7532861	A	1.4542942	A	1.23028443730942	0	lncRNA	1122-1_{1..545}	"transcript_id ""ENST00000416350.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416350.1"" | genecode_v17"	chr2	151422648	151423192	+	ENSG00000237220.1	ENST00000416350.1	AC104777.3	AC104777.3-001	NA	NA	NA	inter
CUST_2780_PI429285431	0.90517354	A	0.92155856	A	0.988707019461362	0	lncRNA	2763-1_{1..675}	"transcript_id ""ENST00000421730.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421730.1"" | genecode_v17"	chr7	 22928990	 22929664	-	ENSG00000235664.1	ENST00000421730.1	AC005682.8	AC005682.8-001	FAM126A	NA	chr7:22921440-22990809	inter
CUST_39107_PI429285431	1.1267068	A	0.9279554	A	1.14770462849734	0	lncRNA	40083-1_{1..449}	n385659|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bab.1||-1.3114500|-0.2500169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385659|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bab.1||-1.3114500|-0.2500169	chr9	102129369	102129817	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34423_PI429285431	8.960911	P	9.099574	P	0.908360577433448	0	lncRNA	35903-1_{1..708}	n341296|CR596696|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3765|NULL|-0.8217850|-0.2915932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341296|CR596696|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3765|NULL|-0.8217850|-0.2915932	chr7	107270457	107271164	+	NA	NA	NA	NA	BCAP29	NA	chr7:107260457-107263762	inter
CUST_13071_PI429285431	4.9935703	P	5.27712	P	0.821567091688114	0	lncRNA	14698-1_{1..265}	lnc-CHD2-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD2-4:7	chr15	 94041750	 94042014	+	lnc-CHD2-4	lnc-CHD2-4:7	XLOC_011361	linc-MCTP2-4	NA	NA	NA	inter
CUST_11358_PI429285431	4.9147034	P	5.074514	P	0.895142579390563	0	lncRNA	12923-1_{1..1564}	lnc-CDK9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK9-1:1	chr9	130547038	130548601	+	lnc-CDK9-1	lnc-CDK9-1:1	XLOC_007573	linc-CDK9-1	SH2D3C	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20chr9:130537038-130541048"	NA	inter
CUST_27067_PI429285431	1.2987357	A	0.92532766	A	1.29540932996781	0	lncRNA	28600-1_{1..3000}	n324177|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327102|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327102|0.3110710|-0.4218601	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324177|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327102|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327102|0.3110710|-0.4218601	chr7	156951685	156954684	+	NA	NA	NA	NA	UBE3C	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40chr7:156941685-156995171"	NA	inner
CUST_29910_PI429285431	0.8965411	A	0.9059964	A	0.993467515519051	0	lncRNA	31674-1_{1..418}	n334030|M25326|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194992|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194992|-1.2807800|-0.4450282	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334030|M25326|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194992|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194992|-1.2807800|-0.4450282	chr6	  3911219	  3911636	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_580_PI429285431	0.89643717	A	0.9153382	A	0.986984251449492	0	lncRNA	572-1_{1..605}	"transcript_id ""ENST00000412445.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412445.1"" | genecode_v17"	chr1	222086990	222087594	-	ENSG00000238042.1	ENST00000412445.1	RP11-815M8.1	RP11-815M8.1-002	NA	NA	NA	inter
CUST_23073_PI429285431	0.92358994	A	0.9111844	A	1.00863594151017	0	lncRNA	24644-1_{1..291}	lnc-SKOR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SKOR1-1:1	chr15	 68166035	 68166325	+	lnc-SKOR1-1	lnc-SKOR1-1:1	ENSG00000259410.1	RP11-34F13.3	NA	NA	NA	inter
CUST_23605_PI429285431	4.453335	P	5.060362	P	0.656548275313277	0	lncRNA	25171-1_{1..712}	lnc-GFM1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GFM1-1:4	chr3	158460570	158461281	+	lnc-GFM1-1	lnc-GFM1-1:4	ENSG00000240207.1	RP11-379F4.4	LOC100287290	NA	chr3:158458206-158461381	inter
CUST_32440_PI429285431	0.9178966	A	1.1352932	A	0.860116150310726	0	lncRNA	34113-1_{1..2116}	n339038|AK090903|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1467|NULL|-0.8642510|-0.3401854	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339038|AK090903|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1467|NULL|-0.8642510|-0.3401854	chr2	179443516	179445631	+	NA	NA	NA	NA	TTN	"hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50chr2:179433516-179455633"	NA	inter
CUST_9059_PI429285431	2.608398	A	1.4084774	A	2.29727027420961	0	lncRNA	10583-1_{1..301}	lnc-FAM55B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM55B-1:1	chr11	115045778	115046078	+	lnc-FAM55B-1	lnc-FAM55B-1:1	ENSG00000256558	RP11-713B9.1	CADM1	NA	chr11:115044345-115056044	inner
CUST_26586_PI429285431	0.9038633	A	1.3724397	A	0.722677358276621	0	lncRNA	28089-1_{1..610}	lnc-U2SURP-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-U2SURP-2:2	chr3	142683307	142683916	+	lnc-U2SURP-2	lnc-U2SURP-2:2	ENSG00000241570.2	RP11-372E1.6	PAQR9	NA	chr3:142680073-142682178	inter
CUST_27219_PI429285431	0.8968362	A	0.90057445	A	0.997412196703061	0	lncRNA	28762-1_{1..455}	n324352|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042589|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042589|-0.9201210|-0.2750655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324352|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042589|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042589|-0.9201210|-0.2750655	chr6	147222009	147222463	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13162_PI429285431	0.89421797	A	0.9003169	A	0.995781466980297	0	lncRNA	14790-2_{3001..3209}	lnc-C5orf38-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C5orf38-1:7	chr5	  2937141	  2937349	+	lnc-C5orf38-1	lnc-C5orf38-1:7	XLOC_004256	linc-IRX1-8	NA	NA	NA	inter
CUST_13535_PI429285431	0.9099973	A	0.90959185	A	1.00028107601882	0	lncRNA	15175-1_{1..3000}	lnc-DLGAP2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLGAP2-4:1	chr8	  1267621	  1270620	+	lnc-DLGAP2-4	lnc-DLGAP2-4:1	XLOC_006684	linc-DLGAP2-4	NA	NA	NA	inter
CUST_12978_PI429285431	0.9134794	A	0.9256567	A	0.991594861204247	0	lncRNA	14604-1_{1..559}	lnc-SOD3-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOD3-4:2	chr4	 23769942	 23770500	+	lnc-SOD3-4	lnc-SOD3-4:2	XLOC_003473	linc-SOD3-3	NA	NA	NA	inter
CUST_23331_PI429285431	5.7460766	P	6.2821517	P	0.689644560287919	0	lncRNA	24902-1_{1..686}	lnc-CTD-2517M22.14.1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2517M22.14.1-2:6	chr8	145742798	145743483	-	lnc-CTD-2517M22.14.1-2	lnc-CTD-2517M22.14.1-2:6	ENSG00000160957.7	RECQL4	C8orf82	NA	chr8:145751603-145752883	inner
CUST_2096_PI429285431	4.9596896	P	5.254389	P	0.815242178602392	0	lncRNA	2087-1_{1..687}	"transcript_id ""ENST00000505844.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505844.1"" | genecode_v17"	chr5	 17436846	 17437532	+	ENSG00000248455.1	ENST00000505844.1	RP11-321E2.3	RP11-321E2.3-003	NA	NA	NA	inter
CUST_36938_PI429285431	6.50263	P	6.680017	P	0.884303190986797	0	lncRNA	38092-1_{1..912}	n345408|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_957|NULL|-1.3810700|-0.2773707	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345408|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_957|NULL|-1.3810700|-0.2773707	chr22	 24238015	 24238926	-	NA	NA	NA	NA	MIF	NA	chr22:24236565-24237409	inter
LNCA_21_P0004327	0.9103874	A	0.9126003	A	0.998467310374431	0	lncRNA	TCONS_00010163	NA	NA	NA	NA	XLOC_004626	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004626), lincRNA [TCONS_00010163]"	chr5:163969240-163978190	hs|5q34	Agilent_HUMAN_G3V2	TCONS_00010163	TCONS_00010163	chr5	163969240	163978190	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001261	1.8395623	A	2.2451556	A	0.754925770074302	0	lncRNA	TCONS_00000838	NA	NA	NA	NA	XLOC_000051	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000051), lincRNA [TCONS_00000838]"	chr1:11424422-11424481	hs|1p36.22	Agilent_HUMAN_G3V2	TCONS_00000838	TCONS_00000838	chr1	 11424422	 11424481	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006552	1.7021896	A	1.1930221	A	1.42322869155755	0	lncRNA	TCONS_00017380	NA	NA	NA	NA	XLOC_008245	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008245), lincRNA [TCONS_00017380]"	chrX:136007215-136007156	hs|Xq26.3	Agilent_HUMAN_G3V2	TCONS_00017380	TCONS_00017380	chrX	136007156	136007215	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2919_PI429285431	0.9130589	A	1.8247076	A	0.531577261868787	0	lncRNA	2900-1_{1..472}	"transcript_id ""ENST00000446053.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446053.1"" | genecode_v17"	chr7	121856401	121856872	+	ENSG00000234418.1	ENST00000446053.1	RP11-560I19.1	RP11-560I19.1-001	NA	NA	NA	inter
CUST_47628_PI429285431	4.5538282	P	4.6393948	P	0.942414342065671	0	lncRNA	51618-2_{3001..4045}	"gi|372620356|ref|NR_046008.1| Homo sapiens zinc finger, matrin-type 1 (ZMAT1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372620356|ref|NR_046008.1| Homo sapiens zinc finger, matrin-type 1 (ZMAT1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_046008.1	NA	NA	NA	NA	NA	Unknown
CUST_16371_PI429285431	0.8982335	A	0.90357816	A	0.996302217687834	0	lncRNA	18068-1_{1..1175}	lnc-PLK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PLK2-1:1	chr5	 57418146	 57419320	-	lnc-PLK2-1	lnc-PLK2-1:1	XLOC_004837	linc-ACTBL2-1	NA	NA	NA	inter
CUST_48907_PI429285431	4.84375	P	5.1927013	P	0.785154622115846	0	lncRNA	52749-1_{1..703}	hg19_lincRNAsTranscripts_TCONS_l2_00019488 range=chr3:125590897-125605120 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019488 range=chr3:125590897-125605120 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	125590897	125591599	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46988_PI429285431	6.9802957	P	6.303605	P	1.59846892753746	0	lncRNA	51087-1_{1..2599}	"gi|338968912|ref|NR_040110.1| Homo sapiens elongator acetyltransferase complex subunit 2 (ELP2), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338968912|ref|NR_040110.1| Homo sapiens elongator acetyltransferase complex subunit 2 (ELP2), transcript variant 7, non-coding RNA"	Chr18	 33709837	 33712435	+	55250	NR_040110.1	NA	NA	NA	NA	NA	inter
CUST_31400_PI429285431	4.192133	P	4.275496	P	0.943854903647965	0	lncRNA	33176-1_{1..1839}	n337866|AK021773|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|249|NULL|4.6941600|-0.1375447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337866|AK021773|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|249|NULL|4.6941600|-0.1375447	chr15	 65244341	 65246179	-	NA	NA	NA	NA	SPG21	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40chr15:65255363-65258504"	NA	inner
CUST_48367_PI429285431	5.474742	P	5.6486664	P	0.886428148520837	0	lncRNA	52221-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00000386 range=chr1:89885750-89893743 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000386 range=chr1:89885750-89893743 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 89885750	 89888749	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43373_PI429285431	4.032766	P	3.6271234	P	1.32467881264863	0	lncRNA	48189-1_{1..3000}	"gi|297747267|ref|NR_033711.1| Homo sapiens TP73 antisense RNA 1 (TP73-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|297747267|ref|NR_033711.1| Homo sapiens TP73 antisense RNA 1 (TP73-AS1), transcript variant 1, non-coding RNA"	Chr1	  3652548	  3655547	-	57212	NR_033711.1	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50"	NA	inter
CUST_15307_PI429285431	0.89312655	A	1.7403669	A	0.555846968092978	0	lncRNA	16985-1_{1..472}	lnc-RAD23B-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAD23B-8:2	chr9	110383825	110384296	+	lnc-RAD23B-8	lnc-RAD23B-8:2	XLOC_007510	linc-ACTL7A-6	NA	NA	NA	inter
CUST_35032_PI429285431	1.4971215	A	0.91311026	A	1.49901128046843	0	lncRNA	36445-1_{1..3000}	n341975|BC041400|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4456|NULL|-1.2127600|-0.3503080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341975|BC041400|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4456|NULL|-1.2127600|-0.3503080	chr12	 81186298	 81189297	-	NA	NA	NA	NA	LIN7A	NA	chr12:81191171-81199685	inter
CUST_5405_PI429285431	4.4249697	P	4.765709	P	0.789636563876145	0	lncRNA	5339-1_{1..313}	"transcript_id ""ENST00000573465.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000573465.1"" | genecode_v17"	chr16	  3038962	  3039274	+	ENSG00000262152.2	ENST00000573465.1	LINC00514	LINC00514-004	PKMYT1	NA	chr16:3028962-3030540	inter
LNCA_21_P0004969	1.0728625	A	1.8455496	A	0.585326255897226	0	lncRNA	THC2691172	NA	NA	NA	NA	XLOC_005539	NA	NA	THC2691172	NA	"BROAD Institute lincRNA (XLOC_005539), lincRNA [TCONS_00012016]"	chr6:167318455-167318514	hs|6q27	Agilent_HUMAN_G3V2	THC2691172	THC2691172	chr6	167318455	167318514	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4964_PI429285431	11.339866	P	11.495418	P	0.897788797684061	0	lncRNA	4908-1_{1..806}	"transcript_id ""ENST00000554889.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554889.1"" | genecode_v17"	chr14	 96321885	 96322690	-	ENSG00000258516.1	ENST00000554889.1	RP11-185P18.2	RP11-185P18.2-002	NA	NA	NA	inter
CUST_38892_PI429285431	0.8889394	A	0.8883648	A	1.0003983616949	0	lncRNA	39878-1_{1..985}	n384846|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003njh.1||-1.1560500|-0.3951502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384846|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003njh.1||-1.1560500|-0.3951502	chr6	 27357717	 27358701	+	NA	NA	NA	NA	ZNF391	NA	chr6:27356524-27368702	inner
CUST_3266_PI429285431	0.9026117	A	0.8917327	A	1.00756925121856	0	lncRNA	3244-1_{1..561}	"transcript_id ""ENST00000524283.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524283.1"" | genecode_v17"	chr8	111949919	111950479	-	ENSG00000253877.1	ENST00000524283.1	RP11-946L20.2	RP11-946L20.2-001	NA	NA	NA	inter
CUST_34797_PI429285431	0.9003652	A	0.90494525	A	0.99683038512467	0	lncRNA	36233-2_{3001..3923}	n341704|AF103907|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4176|NULL|-1.1267900|-0.3034316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341704|AF103907|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4176|NULL|-1.1267900|-0.3034316	chr9	 79382351	 79383273	+	NA	NA	NA	NA	PRUNE2	NA	chr9:79369351-79412485	inner
CUST_37800_PI429285431	10.876284	P	11.26313	P	0.764799772880477	0	lncRNA	38892-2_{3001..3522}	n346308|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1858|NULL|-1.3218100|-0.2109306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346308|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1858|NULL|-1.3218100|-0.2109306	chr4	 15923181	 15923702	+	NA	NA	NA	NA	NA	"hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20"	NA	inter
CUST_1707_PI429285431	2.8371212	A	3.010952	P	0.886485660582558	0	lncRNA	1691-1_{1..764}	"transcript_id ""ENST00000507932.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507932.1"" | genecode_v17"	chr4	 14384747	 14385510	-	ENSG00000251412.1	ENST00000507932.1	AC006296.1	AC006296.1-001	NA	NA	NA	inter
CUST_19478_PI429285431	0.9004683	A	0.9100698	A	0.993366844491927	0	lncRNA	21135-1_{1..587}	lnc-MACC1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MACC1-1:4	chr7	 20171301	 20171887	-	lnc-MACC1-1	lnc-MACC1-1:4	ENSG00000243004.1	AC005062.2	MACC1	NA	chr7:20174278-20181342	inter
CUST_12615_PI429285431	2.2477694	A	3.1779177	P	0.524804392439372	0	lncRNA	14229-1_{1..478}	lnc-ACTL7A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACTL7A-2:1	chr9	111035529	111036006	+	lnc-ACTL7A-2	lnc-ACTL7A-2:1	XLOC_007514	linc-ACTL7A-2	NA	NA	NA	inter
CUST_23179_PI429285431	2.7199001	A	1.4940128	A	2.33899260427427	0	lncRNA	24751-1_{1..2293}	lnc-LIN54-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-LIN54-1:1	chr4	 83821487	 83823779	-	lnc-LIN54-1	lnc-LIN54-1:1	ENSG00000251022.1	RP11-163O17.1	SEC31A	"hg19_refFlat_THAP9:range=chr4:83821956-838400775'pad=0,hg19_refFlat_THAP9:range=chr4:83821956-838400775'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.40chr4:83811487-83812419"	NA	inner
CUST_30496_PI429285431	11.29044	P	11.712046	P	0.746593058365342	0	lncRNA	32276-1_{1..563}	n335650|CR609498|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000288693|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000288693|2.4580900|-0.1215523	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335650|CR609498|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000288693|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000288693|2.4580900|-0.1215523	chr19	 56180042	 56180604	+	NA	NA	NA	NA	EPN1	NA	chr19:56186561-56196082	inner
CUST_12253_PI429285431	0.894664	A	0.89063966	A	1.00279335408798	0	lncRNA	13859-1_{1..803}	lnc-SYCP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYCP2-2:1	chr20	 58044861	 58045663	-	lnc-SYCP2-2	lnc-SYCP2-2:1	XLOC_013824	linc-SLMO2-3	NA	NA	NA	inter
CUST_2960_PI429285431	2.4953632	A	3.3846974	P	0.53986320623322	0	lncRNA	2941-1_{1..565}	"transcript_id ""ENST00000442017.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442017.1"" | genecode_v17"	chr7	157074230	157074794	-	ENSG00000229660.1	ENST00000442017.1	RP5-1142J19.1	RP5-1142J19.1-001	NA	NA	NA	inter
CUST_26944_PI429285431	0.91281444	A	0.89782697	A	1.01044267061849	0	lncRNA	28465-1_{1..641}	n324025|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053138|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053138|-1.2806500|-0.4226848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324025|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053138|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053138|-1.2806500|-0.4226848	chr9	 95232444	 95233084	-	NA	NA	NA	NA	CENPP	NA	chr9:95222444-95243402	inner
CUST_33534_PI429285431	0.90550923	A	1.592104	A	0.621318634868092	0	lncRNA	35102-1_{1..2582}	n340275|AK124206|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2736|NULL|0.3630860|-0.3705173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340275|AK124206|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2736|NULL|0.3630860|-0.3705173	chr4	174071352	174073933	-	NA	NA	NA	NA	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10"	NA	inter
CUST_42071_PI429285431	4.424011	P	5.2197237	P	0.576058526730628	0	lncRNA	43987-1_{1..72}	ENST00000582479 ncrna:miRNA chromosome:GRCh37:9:137742416:137742487:-1 gene:ENSG00000266827 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582479 ncrna:miRNA chromosome:GRCh37:9:137742416:137742487:-1 gene:ENSG00000266827 gene_biotype:miRNA transcript_biotype:miRNA	chr9	137742416	137742487	-	ENSG00000266827	ENST00000582479	NA	NA	COL5A1	NA	chr9:137732416-137736689	inter
CUST_15431_PI429285431	3.40368	P	3.2076375	P	1.14555164400812	0	lncRNA	17118-1_{1..639}	lnc-PAM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAM-1:1	chr5	102057776	102058414	+	lnc-PAM-1	lnc-PAM-1:1	XLOC_004495	linc-PAM-1	NA	NA	NA	inter
CUST_12873_PI429285431	4.808889	P	5.4803004	P	0.627892114853851	0	lncRNA	14499-2_{3001..4043}	lnc-C5orf17-8:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf17-8:13	chr5	 27488033	 27489075	+	lnc-C5orf17-8	lnc-C5orf17-8:13	XLOC_004323	linc-CDH6-5	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00"	NA	inter
CUST_32607_PI429285431	0.9164436	A	0.92104334	A	0.996816780408644	0	lncRNA	34267-1_{1..942}	n339228|BC029457|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1660|NULL|-0.8959660|-0.3019054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339228|BC029457|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1660|NULL|-0.8959660|-0.3019054	chr3	   405055	   405996	-	NA	NA	NA	NA	CHL1	"hg19_refFlat_CHL1:range=chr3:361460-4473945'pad=0,hg19_refFlat_CHL1:range=chr3:361460-4473945'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80chr3:395055-437478"	NA	inner
CUST_51848_PI429285431	1.4272318	A	2.2608323	A	0.561127101749068	0	lncRNA	55403-1_{1..241}	hg19_lincRNAsTranscripts_TCONS_l2_00013128 range=chr19:43877619-43878596 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013128 range=chr19:43877619-43878596 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 43877619	 43877859	-	NA	NA	NA	NA	TEX101	NA	chr19:43875887-43888596	inter
CUST_31536_PI429285431	3.616934	P	3.9335327	P	0.802960709176712	0	lncRNA	33295-1_{1..2447}	n338024|BC042023|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|411|NULL|-1.1807900|-0.4699693	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338024|BC042023|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|411|NULL|-1.1807900|-0.4699693	chr1	 84331405	 84333851	-	NA	NA	NA	NA	TTLL7	NA	chr1:84335057-84343836	inter
CUST_30037_PI429285431	0.8965577	A	0.8888728	A	1.00534097921424	0	lncRNA	31806-1_{1..544}	n334520|U36914|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219492|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219492|-1.1810800|-0.3122769	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334520|U36914|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219492|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219492|-1.1810800|-0.3122769	chr6	  1239868	  1240411	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005943	1.669735	A	1.3488302	A	1.24911369690431	0	lncRNA	TCONS_00015327	NA	NA	NA	NA	XLOC_006878	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006878), lincRNA [TCONS_00015327]"	chr8:99058654-99059896	hs|8q22.2	Agilent_HUMAN_G3V2	TCONS_00015327	TCONS_00015327	chr8	 99058654	 99059896	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29275_PI429285431	2.2244875	A	2.724942	A	0.706884052608979	0	lncRNA	31026-1_{1..392}	n332384|AM991284|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500230|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500230|-0.9277300|-0.1469693	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332384|AM991284|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500230|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500230|-0.9277300|-0.1469693	chr18	 45567404	 45567795	-	NA	NA	NA	NA	ZBTB7C	NA	chr18:45557404-45663680	inner
CUST_20246_PI429285431	9.917632	P	10.154198	P	0.848763193236252	0	lncRNA	21889-1_{1..635}	lnc-PARP10-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PARP10-1:5	chr8	145109464	145110098	-	lnc-PARP10-1	lnc-PARP10-1:5	ENSG00000178814.11	OPLAH	SPATC1	NA	chr8:145099464-145102015	inner
CUST_28599_PI429285431	0.9149872	A	0.91904795	A	0.997189260133336	0	lncRNA	30280-1_{1..477}	n325961|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048231|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048231|-1.0341700|-0.2192063	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325961|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048231|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048231|-1.0341700|-0.2192063	chr10	 63211519	 63211995	-	NA	NA	NA	NA	TMEM26	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20chr10:63201519-63213208"	NA	inner
CUST_27233_PI429285431	0.90643996	A	0.91405237	A	0.99473737585342	0	lncRNA	28778-1_{1..381}	n324369|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042421|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042421|-1.0138800|-0.2783202	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324369|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042421|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042421|-1.0138800|-0.2783202	chr6	138308195	138308575	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28645_PI429285431	1.3061911	A	1.0480089	A	1.19597082808867	0	lncRNA	30336-1_{1..421}	n326023|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047455|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047455|-1.3801400|-0.2986262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326023|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047455|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047455|-1.3801400|-0.2986262	chr10	 31933533	 31933953	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29122_PI429285431	3.1150384	P	3.0398574	P	1.05349319854122	0	lncRNA	30857-1_{1..407}	n326622|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021840|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021840|-1.2531500|-0.2039358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326622|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021840|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021840|-1.2531500|-0.2039358	chr1	 47999390	 47999796	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36349_PI429285431	3.7252393	P	3.7946684	P	0.953015048383467	0	lncRNA	37575-3_{6001..6853}	n344872|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_421|NULL|-1.3011900|-0.2820272	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344872|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_421|NULL|-1.3011900|-0.2820272	chr6	 42733240	 42734092	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-61.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-55.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30"	NA	inter
CUST_41788_PI429285431	0.8936099	A	1.5590738	A	0.630485938448043	0	lncRNA	43365-1_{1..66}	ENST00000582948 ncrna:miRNA chromosome:GRCh37:7:63387214:63387279:1 gene:ENSG00000265017 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582948 ncrna:miRNA chromosome:GRCh37:7:63387214:63387279:1 gene:ENSG00000265017 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 63387214	 63387279	+	ENSG00000265017	ENST00000582948	NA	NA	NA	NA	NA	inter
CUST_34453_PI429285431	5.3428063	P	5.406775	P	0.956628912415764	0	lncRNA	35929-1_{1..1678}	n341329|AK057422|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3798|NULL|-1.1252900|-0.3189714	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341329|AK057422|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3798|NULL|-1.1252900|-0.3189714	chr7	134883152	134884829	+	NA	NA	NA	NA	WDR91	NA	chr7:134873152-134894924	inner
CUST_20014_PI429285431	2.9332016	A	3.6078262	P	0.626495216828359	0	lncRNA	21667-1_{1..754}	lnc-POLR2B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLR2B-1:2	chr4	 58071240	 58071993	+	lnc-POLR2B-1	lnc-POLR2B-1:2	ENSG00000245067.2	RP11-12A1.1	NA	"hg19_refFlat_IGFBP7:range=chr4:57897483-579765175'pad=0,hg19_refFlat_IGFBP7:range=chr4:57897483-579765175'pad=0 3'pad=0 strand=- repeatMasking=none,-104.60;hg19_refFlat_IGFBP7:range=chr4:57898581-579765175'pad=0,hg19_refFlat_IGFBP7:range=chr4:57898581-579765175'pad=0 3'pad=0 strand=- repeatMasking=none,-104.60"	NA	inter
CUST_21017_PI429285431	4.8959303	P	4.91276	P	0.988402318554881	0	lncRNA	22646-1_{1..3000}	lnc-CDK5-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK5-2:4	chr7	150720961	150723960	-	lnc-CDK5-2	lnc-CDK5-2:4	ENSG00000181652.11	ATG9B	ABCB8	"hg19_refFlat_NOS3:range=chr7:150690892-1507112575'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507112575'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.60chr7:150725510-150731586"	NA	inter
CUST_16756_PI429285431	0.8977262	A	1.1869193	A	0.818359639506052	0	lncRNA	18464-1_{1..1884}	lnc-ATP6V1G2-DDX39B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP6V1G2-DDX39B-1:1	chr6	 31462031	 31463914	-	lnc-ATP6V1G2-DDX39B-1	lnc-ATP6V1G2-DDX39B-1:1	XLOC_005681	linc-HLA-B-1	MICB	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10chr6:31465855-31472537"	NA	inter
CUST_45194_PI429285431	7.088194	P	7.7405925	P	0.636221706744853	0	lncRNA	49661-2_{3001..6000}	"gi|239582729|ref|NR_027765.1| Homo sapiens SET binding factor 1 pseudogene 1 (SBF1P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239582729|ref|NR_027765.1| Homo sapiens SET binding factor 1 pseudogene 1 (SBF1P1), non-coding RNA"	Chr8	 56364757	 56367756	-	100133234	NR_027765.1	NA	NA	NA	NA	NA	inter
CUST_49482_PI429285431	1.4322848	A	1.0755978	A	1.28048202412777	0	lncRNA	53274-3_{6001..7242}	hg19_lincRNAsTranscripts_TCONS_l2_00024567 range=chr6:2851295-2866568 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024567 range=chr6:2851295-2866568 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	  2857295	  2858536	-	NA	NA	NA	NA	SERPINB1	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80chr6:2841295-2842081"	NA	inter
CUST_51379_PI429285431	4.4912877	P	4.8202977	P	0.796082580735692	0	lncRNA	54973-1_{1..774}	hg19_lincRNAsTranscripts_TCONS_l2_00008878 range=chr15:100347834-100353277 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008878 range=chr15:100347834-100353277 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	100347834	100348607	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40"	NA	inter
CUST_48742_PI429285431	9.2222	P	9.516175	P	0.815651627382193	0	lncRNA	52580-1_{1..308}	hg19_lincRNAsTranscripts_TCONS_l2_00014908 range=chr2:132384450-132384816 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014908 range=chr2:132384450-132384816 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	132384450	132384757	-	NA	NA	NA	NA	NA	"hg19_refFlat_ACTA1:range=chr1:229567246-2295688625'pad=0,hg19_refFlat_ACTA1:range=chr1:229567246-2295688625'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_ACTA2:range=chr10:90694980-907086875'pad=0,hg19_refFlat_ACTA2:range=chr10:90694980-907086875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ACTG1:range=chr17:79477716-794793805'pad=0,hg19_refFlat_ACTG1:range=chr17:79477716-794793805'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ACTG2:range=chr2:74128439-741467025'pad=0,hg19_refFlat_ACTG2:range=chr2:74128439-741467025'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ACTB:range=chr7:5567379-55692885'pad=0,hg19_refFlat_ACTB:range=chr7:5567379-55692885'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10"	NA	inter
LNCA_21_P0002254	0.9100802	A	0.91527516	A	0.996405603487365	0	lncRNA	TCONS_00003758	NA	NA	NA	NA	XLOC_001558	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001558), lincRNA [TCONS_00003758]"	chr2:86116884-86131011	hs|2p11.2	Agilent_HUMAN_G3V2	TCONS_00003758	TCONS_00003758	chr2	 86116884	 86131011	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47324_PI429285431	4.428417	P	3.9008524	P	1.44149376834686	0	lncRNA	51381-2_{3001..4764}	"gi|325652077|ref|NR_037941.1| Homo sapiens syntaxin 16 (STX16), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|325652077|ref|NR_037941.1| Homo sapiens syntaxin 16 (STX16), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NR_037941.1	NA	NA	NA	"hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20"	NA	Unknown
CUST_34374_PI429285431	0.91067153	A	0.90867126	A	1.00138744312072	0	lncRNA	35860-1_{1..2720}	n341242|BC042682|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3710|NULL|-1.1728900|-0.2065868	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341242|BC042682|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3710|NULL|-1.1728900|-0.2065868	chr7	 45977476	 45980195	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42627_PI429285431	7.7763376	P	7.8708076	P	0.93661626708986	0	lncRNA	45496-1_{1..133}	ENST00000458790 ncrna:snoRNA chromosome:GRCh37:5:111497182:111497314:1 gene:ENSG00000238363 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000458790 ncrna:snoRNA chromosome:GRCh37:5:111497182:111497314:1 gene:ENSG00000238363 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	111497182	111497314	+	ENSG00000238363	ENST00000458790	NA	NA	EPB41L4A	NA	chr5:111498315-111507314	inter
LNCA_21_P0006859	0.9077352	A	2.0819256	A	0.443132363245607	0	lncRNA	TCONS_00018165	NA	NA	NA	NA	XLOC_008456	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008456), lincRNA [TCONS_00018165]"	chr10:37921742-37921801	hs|10p11.21	Agilent_HUMAN_G3V2	TCONS_00018165	TCONS_00018165	chr10	 37921742	 37921801	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8243_PI429285431	6.5597067	P	7.0994673	P	0.687885046855668	0	lncRNA	9833-1_{1..3000}	lnc-RPP40-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPP40-1:2	chr6	  5054312	  5057311	-	lnc-RPP40-1	lnc-RPP40-1:2	ENSG00000248284	XLOC_005592	NA	NA	NA	inter
CUST_41408_PI429285431	9.042413	P	9.123555	P	0.945309068330788	0	lncRNA	42533-1_{1..73}	ENST00000582241 ncrna:miRNA chromosome:GRCh37:21:42539484:42539556:1 gene:ENSG00000263681 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582241 ncrna:miRNA chromosome:GRCh37:21:42539484:42539556:1 gene:ENSG00000263681 gene_biotype:miRNA transcript_biotype:miRNA	chr21	 42539484	 42539556	+	ENSG00000263681	ENST00000582241	NA	NA	BACE2	NA	chr21:42539728-42549556	inter
CUST_348_PI429201921	0.89822245	A	0.9421271	A	0.970026018778976	0	lncRNA	226-3_{6001..8291}	TC13001311.hg.1	TCONS_00021603-XLOC_010507 // Rinn lincRNAs // linc-C13orf28-1 chr13:+:112967780-112976072 // chr13 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr13:+:112967780-112976072	NA	Affy_HUMAN_HTA2.0	TCONS_00021603-XLOC_010507	linc-C13orf28-1	chr13	112967780	112976072	+	NA	NA	NA	NA	ACOT11	NA	chr1:54990059-54992932	Unknown
CUST_49529_PI429285431	1.3433753	A	2.0164566	A	0.62716575867683	0	lncRNA	53321-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00024769 range=chr6:44058593-44063343 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024769 range=chr6:44058593-44063343 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 44058593	 44061592	-	NA	NA	NA	NA	MRPL14	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00chr6:44056862-44073343"	NA	inter
CUST_44280_PI429285431	0.9000323	A	0.9035349	A	0.997575127450228	0	lncRNA	48916-1_{1..1533}	"gi|300068990|ref|NR_033945.1| Homo sapiens uncharacterized LOC647107 (LOC647107), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300068990|ref|NR_033945.1| Homo sapiens uncharacterized LOC647107 (LOC647107), non-coding RNA"	Chr3	162895031	162896563	-	647107	NR_033945.1	NA	NA	NA	NA	NA	inter
CUST_45285_PI429285431	12.207105	P	12.562883	P	0.781448119121412	0	lncRNA	49733-1_{1..2114}	"gi|359465550|ref|NR_045600.1| Homo sapiens solute carrier family 52, riboflavin transporter, member 2 (SLC52A2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|359465550|ref|NR_045600.1| Homo sapiens solute carrier family 52, riboflavin transporter, member 2 (SLC52A2), transcript variant 4, non-coding RNA"	NW_003315924.1	   127840	   129953	+	79581	NR_045600.1	NA	NA	NA	NA	NA	Unknown
CUST_25187_PI429285431	0.9029726	A	1.770237	A	0.548185320197328	0	lncRNA	26718-1_{1..607}	lnc-RP11-43D2.2.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-43D2.2.1-5:1	chr5	124073092	124073698	+	lnc-RP11-43D2.2.1-5	lnc-RP11-43D2.2.1-5:1	ENSG00000249643.1	RP11-436H11.6	ZNF608	NA	chr5:124063092-124080805	inner
LNCA_21_P0001563	0.9128869	A	2.0520148	A	0.454033955366136	0	lncRNA	TCONS_00001617	NA	NA	NA	NA	XLOC_000947	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000947), lincRNA [TCONS_00001617]"	chr1:106015962-106015903	hs|1p21.1	Agilent_HUMAN_G3V2	TCONS_00001617	TCONS_00001617	chr1	106015903	106015962	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1946_PI429285431	0.90847105	A	0.93112165	A	0.984422406121615	0	lncRNA	1939-1_{1..488}	"transcript_id ""ENST00000507949.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507949.1"" | genecode_v17"	chr4	152840620	152841107	+	ENSG00000248991.1	ENST00000507949.1	RP11-73G16.2	RP11-73G16.2-001	NA	NA	NA	inter
CUST_25176_PI429285431	1.4902081	A	1.2562561	A	1.17605212113386	0	lncRNA	26707-1_{1..562}	lnc-AF127577.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AF127577.1-3:1	chr21	 16336406	 16336967	+	lnc-AF127577.1-3	lnc-AF127577.1-3:1	ENSG00000229047.1	AF127577.10	NRIP1	NA	chr21:16333556-16346554	inner
CUST_32931_PI429285431	9.944412	P	9.781895	P	1.11923811609505	0	lncRNA	34552-1_{1..3000}	n339601|CR627168|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2045|NULL|-0.9200360|-0.3587815	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339601|CR627168|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2045|NULL|-0.9200360|-0.3587815	chr3	137510814	137513813	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39236_PI429285431	5.1228533	P	5.101455	P	1.01494271381899	0	lncRNA	40208-1_{1..3000}	n386071|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010arh.1||-0.7641220|-0.2088952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386071|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010arh.1||-0.7641220|-0.2088952	chr14	 73075741	 73078740	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43455_PI429285431	7.7038593	P	6.9897165	P	1.64050819418372	0	lncRNA	48259-2_{3001..4791}	"gi|371123633|ref|NR_045791.1| Homo sapiens NOP2/Sun domain family, member 4 (NSUN4), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371123633|ref|NR_045791.1| Homo sapiens NOP2/Sun domain family, member 4 (NSUN4), transcript variant 6, non-coding RNA"	Chr1	 46808849	 46810639	+	387338	NR_045791.1	NA	NA	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10"	NA	inter
CUST_38722_PI429285431	6.5518513	P	6.7912035	P	0.847125603945311	0	lncRNA	39717-1_{1..1987}	n384212|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003brr.3||0.1880660|-0.3664563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n384212|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003brr.3||0.1880660|-0.3664563	chr3	  9431590	  9433576	-	NA	NA	NA	NA	LOC100652926	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10chr3:9435634-9438752"	NA	inter
CUST_45728_PI429285431	5.594868	P	5.822403	P	0.854092955669614	0	lncRNA	50085-11_{30001..33000}	"gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	Chr11	  2659558	  2662557	-	10984	NR_002728.3	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.02;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0,hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_21375_PI429285431	0.9080627	A	0.90030706	A	1.00539027553983	0	lncRNA	22997-1_{1..358}	lnc-TAF4B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TAF4B-2:1	chr18	 24269319	 24269676	+	lnc-TAF4B-2	lnc-TAF4B-2:1	ENSG00000263677.1	RP11-17A19.2	NA	NA	NA	inter
LNCA_21_P0012659	0.9087138	A	0.91030824	A	0.998895428897681	0	lncRNA	ENST00000513843	NA	NA	NA	NA	XLOC_l2_011095	NA	ENST00000513843	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011095), lincRNA [TCONS_l2_00021099]"	chr4:34123009-34122950	hs|4p15.1	Agilent_HUMAN_G3V2	ENST00000513843	ENST00000513843	chr4	 34122950	 34123009	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30230_PI429285431	5.8810873	P	6.5727377	P	0.619145161131255	0	lncRNA	32005-1_{1..253}	n335094|AJ844634|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249438|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249438|1.4761200|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335094|AJ844634|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249438|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249438|1.4761200|-1.0000000	chr19	  1220377	  1220629	+	NA	NA	NA	NA	STK11	NA	chr19:1210377-1228434	inner
CUST_2126_PI429285431	0.90023875	A	0.9063292	A	0.995787320089525	0	lncRNA	2117-1_{1..464}	"transcript_id ""ENST00000515358.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515358.1"" | genecode_v17"	chr5	 31744095	 31744558	-	ENSG00000248378.1	ENST00000515358.1	RP11-5N11.5	RP11-5N11.5-001	NA	NA	NA	inter
CUST_14177_PI429285431	0.90177125	A	0.9115513	A	0.993243911598976	0	lncRNA	15829-3_{6001..6888}	lnc-CA5A-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CA5A-4:3	chr16	 88224773	 88225660	-	lnc-CA5A-4	lnc-CA5A-4:3	XLOC_012057	linc-CA5A-2	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.70;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70"	NA	inter
CUST_3455_PI429285431	0.8879479	A	0.89063054	A	0.99814226338033	0	lncRNA	3426-1_{1..649}	"transcript_id ""ENST00000588368.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588368.1"" | genecode_v17"	chr9	 84888375	 84889023	+	ENSG00000228430.4	ENST00000588368.1	RP11-15B24.5	RP11-15B24.5-005	NA	NA	NA	inter
CUST_30669_PI429285431	1.1904228	A	0.8923248	A	1.22952238393541	0	lncRNA	32451-1_{1..236}	n336135|X92024|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324502|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324502|-1.3130400|-0.3926112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336135|X92024|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324502|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324502|-1.3130400|-0.3926112	chr14	 22466245	 22466480	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32894_PI429285431	4.8176894	P	4.613584	P	1.15197179970008	0	lncRNA	34521-1_{1..2826}	n339563|BC040919|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2005|NULL|-0.9605290|-0.2286148	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339563|BC040919|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2005|NULL|-0.9605290|-0.2286148	chr3	133052420	133055245	-	NA	NA	NA	NA	BFSP2	NA	chr3:133118790-133141725	inner
CUST_49599_PI429285431	0.9031199	A	0.91263795	A	0.993424305603503	0	lncRNA	53389-1_{1..839}	hg19_lincRNAsTranscripts_TCONS_l2_00025014 range=chr6:160899538-160941163 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025014 range=chr6:160899538-160941163 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	160899538	160900376	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2687_PI429285431	5.593713	P	5.999179	P	0.75499238587864	0	lncRNA	2673-1_{1..741}	"transcript_id ""ENST00000427974.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427974.1"" | genecode_v17"	chr6	160060339	160061079	-	ENSG00000224073.1	ENST00000427974.1	RP1-56L9.7	RP1-56L9.7-001	NA	NA	NA	inter
CUST_18666_PI429285431	1.0861007	A	1.0839032	A	1.0015243515738	0	lncRNA	20368-1_{1..1555}	lnc-GPR89B-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-GPR89B-7:2	chr1	147900876	147902430	+	lnc-GPR89B-7	lnc-GPR89B-7:2	ENSG00000231551	RP11-495P10.1	PPIAL4A	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-62.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80chr1:147907427-147911508"	NA	inter
LNCA_21_P0009344	5.896301	P	6.476218	P	0.669002264799723	0	lncRNA	TCONS_00025725	NA	NA	NA	NA	XLOC_012542	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012542), lincRNA [TCONS_00025725]"	chr17:59477074-59477015	hs|17q23.2	Agilent_HUMAN_G3V2	TCONS_00025725	TCONS_00025725	chr17	 59477015	 59477074	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42161_PI429285431	3.4900951	P	3.727674	P	0.848167495262993	0	lncRNA	44195-1_{1..75}	ENST00000579503 ncrna:miRNA chromosome:GRCh37:7:4828196:4828270:-1 gene:ENSG00000264474 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579503 ncrna:miRNA chromosome:GRCh37:7:4828196:4828270:-1 gene:ENSG00000264474 gene_biotype:miRNA transcript_biotype:miRNA	chr7	  4828196	  4828270	-	ENSG00000264474	ENST00000579503	NA	NA	KIAA0415	NA	chr7:4818196-4834026	inner
CUST_1669_PI429285431	3.9309359	P	3.3393593	P	1.50689260405239	0	lncRNA	1654-1_{1..2168}	"transcript_id ""ENST00000437428.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000437428.2"" | genecode_v17"	chr3	197880121	197882288	+	ENSG00000236438.2	ENST00000437428.2	FAM157A	FAM157A-001	FAM157A	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr3:197879237-197907728"	NA	inner
CUST_22373_PI429285431	2.0484278	A	1.4515681	A	1.51242090939247	0	lncRNA	23966-2_{3001..3166}	lnc-SNURF-3:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SNURF-3:13	chr15	 25470306	 25470471	+	lnc-SNURF-3	lnc-SNURF-3:13	ENSG00000224078.4	SNHG14	SNRPN	NA	chr15:25457306-25477432	inter
CUST_35313_PI429285431	3.2050138	P	2.4136198	A	1.73074598334247	0	lncRNA	36716-1_{1..2448}	n342336|AK124353|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4828|NULL|-0.9734320|-0.2952568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342336|AK124353|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4828|NULL|-0.9734320|-0.2952568	chr1	185139239	185141686	+	NA	NA	NA	NA	SWT1	"hg19_refFlat_RPL22:range=chr1:6246732-62596335'pad=0,hg19_refFlat_RPL22:range=chr1:6246732-62596335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60chr1:185129239-185151668"	NA	inner
CUST_25101_PI429285431	3.0431075	P	3.5284204	P	0.714342122439229	0	lncRNA	26638-1_{1..754}	lnc-STAP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-STAP1-2:1	chr4	 67015592	 67016345	+	lnc-STAP1-2	lnc-STAP1-2:1	ENSG00000249413.1	RP11-25H12.1	NA	NA	NA	inter
CUST_32205_PI429285431	1.0668343	A	0.89707816	A	1.12486833114407	0	lncRNA	33902-1_{1..2538}	n338782|BC036312|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1204|NULL|-1.1973300|-0.3277796	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338782|BC036312|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1204|NULL|-1.1973300|-0.3277796	chr2	 40599055	 40601592	+	NA	NA	NA	NA	SLC8A1	NA	chr2:40589055-40611579	inner
LNCA_19_P00808865	3.804804	P	4.1118913	P	0.808271957376026	0	lncRNA	THC2718861	NA	NA	NA	NA	XLOC_014103	NA	NA	THC2718861	NA	"BROAD Institute lincRNA (XLOC_014103), lincRNA [TCONS_00029159]"	chr21:044808859-044808800	hs|21q22.3	Agilent_HUMAN_G3V2	THC2718861	THC2718861	chr21	 44808800	 44808859	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005572	5.5610566	P	5.807896	P	0.842740637695209	0	lncRNA	TCONS_00014189	NA	NA	NA	NA	XLOC_006198	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006198), lincRNA [TCONS_00014189]"	chr7:106269038-106269097	hs|7q22.3	Agilent_HUMAN_G3V2	TCONS_00014189	TCONS_00014189	chr7	106269038	106269097	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26913_PI429285431	0.91277725	A	1.3952328	A	0.715758324776273	0	lncRNA	28431-1_{1..404}	n323989|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053786|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053786|-1.0358800|-0.1571377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323989|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053786|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053786|-1.0358800|-0.1571377	chr9	116458404	116458807	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006733	0.8953899	A	1.1257583	A	0.852417194622195	0	lncRNA	ENST00000457632	NA	NA	NA	NA	XLOC_008721	NA	ENST00000457632	NA	NA	"BROAD Institute lincRNA (XLOC_008721), lincRNA [TCONS_00017920]"	chr10:6933478-6933419	hs|10p14	Agilent_HUMAN_G3V2	ENST00000457632	ENST00000457632	chr10	  6933419	  6933478	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_712_PI429285431	1.330403	A	0.90892994	A	1.33929433987574	0	lncRNA	705-1_{1..790}	"transcript_id ""ENST00000588145.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588145.1"" | genecode_v17"	chr2	  6777912	  6778701	-	ENSG00000236172.2	ENST00000588145.1	AC097517.2	AC097517.2-015	NA	NA	NA	inter
CUST_20857_PI429285431	0.9021095	A	0.8980718	A	1.00280264044501	0	lncRNA	22488-1_{1..647}	lnc-RPLP1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPLP1-2:5	chr15	 69988006	 69988652	+	lnc-RPLP1-2	lnc-RPLP1-2:5	ENSG00000259641.1	RP11-279F6.3	NA	NA	NA	inter
CUST_19890_PI429285431	2.346213	A	2.5889657	A	0.845131240420107	0	lncRNA	21546-1_{1..3000}	lnc-TWSG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TWSG1-1:1	chr18	  9506240	  9509239	+	lnc-TWSG1-1	lnc-TWSG1-1:1	ENSG00000266805.1	RP11-61L19.1	RALBP1	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr18:9496240-9519724"	NA	inner
CUST_40657_PI429285431	2.4144368	A	2.4609845	A	0.968250535995003	0	lncRNA	41395-1_{1..3000}	n410211|NR_037163|lncRNA|Homosapiens||RefGeneNoncode|NR_037163||7.4038300|-0.3293164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410211|NR_037163|lncRNA|Homosapiens||RefGeneNoncode|NR_037163||7.4038300|-0.3293164	chr1	167190122	167193121	+	NA	NA	NA	NA	POU2F1	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr1:167180122-167396582"	NA	inner
CUST_3906_PI429285431	0.9032009	A	0.894475	A	1.00606666108163	0	lncRNA	3875-1_{1..321}	"transcript_id ""ENST00000527270.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527270.1"" | genecode_v17"	chr11	 33831691	 33832011	+	ENSG00000254619.1	ENST00000527270.1	RP11-646J21.4	RP11-646J21.4-001	NA	NA	NA	inter
CUST_36687_PI429285431	0.8847865	A	0.88341486	A	1.00095120050327	0	lncRNA	37870-1_{1..891}	n345177|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_726|NULL|-1.2698300|-0.3053726	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345177|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_726|NULL|-1.2698300|-0.3053726	chr12	 48153998	 48154888	+	NA	NA	NA	NA	SLC48A1	NA	chr12:48166967-48173014	inter
CUST_33969_PI429285431	0.9020286	A	1.0779433	A	0.885206101245379	0	lncRNA	35507-1_{1..3000}	n340778|AK128590|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3241|NULL|-0.4293790|-0.2362880	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340778|AK128590|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3241|NULL|-0.4293790|-0.2362880	chr5	179505356	179508355	-	NA	NA	NA	NA	RNF130	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90chr5:179495356-179499109"	NA	inter
CUST_9075_PI429285431	4.462275	P	4.431799	P	1.02134905204444	0	lncRNA	10598-1_{1..2482}	lnc-ITGB7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ITGB7-1:1	chr12	 53568333	 53570814	-	lnc-ITGB7-1	lnc-ITGB7-1:1	ENSG00000257479	RP11-1136G11.7	ZNF740	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50chr12:53574535-53580212"	NA	inner
CUST_46144_PI429285431	1.9336079	A	1.7937855	A	1.10176947646703	0	lncRNA	50394-1_{1..3000}	"gi|300068999|ref|NR_033956.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 10, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|300068999|ref|NR_033956.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 10, non-coding RNA"	NA	NA	NA	NA	NA	NR_033956.1	NA	NA	NA	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	Unknown
CUST_35925_PI429285431	0.8851567	A	0.8833536	A	1.00125059502386	0	lncRNA	37291-2_{3001..5177}	n344566|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_114|NULL|-1.6295500|-0.3387018	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344566|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_114|NULL|-1.6295500|-0.3387018	chr14	101364082	101366258	+	NA	NA	NA	NA	RTL1	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30chr14:101351082-101351184"	NA	inter
LNCA_21_P0009220	3.2067492	P	2.82465	A	1.30323675710301	0	lncRNA	TCONS_00025308	NA	NA	NA	NA	XLOC_012111	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012111), lincRNA [TCONS_00025308]"	chr17:10751551-10751610	hs|17p12	Agilent_HUMAN_G3V2	TCONS_00025308	TCONS_00025308	chr17	 10751551	 10751610	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33156_PI429285431	0.89267683	A	0.88676685	A	1.0041048880419	0	lncRNA	34751-2_{3001..3571}	n339848|AK128175|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2296|NULL|-1.1605300|-0.3319926	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339848|AK128175|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2296|NULL|-1.1605300|-0.3319926	chr18	 37645866	 37646436	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6425_PI429285431	2.2001483	A	2.263602	A	0.956970461959987	0	lncRNA	6364-1_{1..185}	"transcript_id ""ENST00000585394.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585394.1"" | genecode_v17"	chr19	 29093286	 29093470	-	ENSG00000267537.1	ENST00000585394.1	AC005394.1	AC005394.1-001	NA	NA	NA	inter
CUST_49974_PI429285431	6.708363	P	6.8992395	P	0.87607330695351	0	lncRNA	53718-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026265 range=chr7:149730165-149745413 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026265 range=chr7:149730165-149745413 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	149730165	149733164	+	NA	NA	NA	NA	NA	"hg19_refFlat_DPP6:range=chr7:153749906-1546841905'pad=0,hg19_refFlat_DPP6:range=chr7:153749906-1546841905'pad=0 3'pad=0 strand=+ repeatMasking=none,-114.10"	NA	inter
LNCA_21_P0009706	2.8609214	A	3.6031308	P	0.597823121041938	0	lncRNA	TCONS_00026984	NA	NA	NA	NA	XLOC_013036	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013036), lincRNA [TCONS_00026984]"	chr19:31715971-31716030	hs|19q12	Agilent_HUMAN_G3V2	TCONS_00026984	TCONS_00026984	chr19	 31715971	 31716030	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15269_PI429285431	0.91149545	A	0.9001443	A	1.00789905180836	0	lncRNA	16942-1_{1..245}	lnc-CBLN4-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLN4-3:2	chr20	 54242560	 54242804	-	lnc-CBLN4-3	lnc-CBLN4-3:2	XLOC_013805	linc-CYP24A1-4	NA	NA	NA	inter
CUST_43823_PI429285431	8.060191	P	7.624179	P	1.35285948377232	0	lncRNA	48547-1_{1..1742}	"gi|223005904|ref|NR_026735.1| Homo sapiens GPN-loop GTPase 1 (GPN1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223005904|ref|NR_026735.1| Homo sapiens GPN-loop GTPase 1 (GPN1), transcript variant 5, non-coding RNA"	Chr2	 27851863	 27853604	+	11321	NR_026735.1	NA	NA	NA	NA	NA	inter
CUST_47741_PI429285431	1.0744046	A	1.3675275	A	0.816133518579933	0	lncRNA	51690-2_{3001..5955}	"gi|385137063|ref|NR_047601.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 31, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137063|ref|NR_047601.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 31, non-coding RNA"	ChrY	 15363259	 15366213	-	7404	NR_047601.1	NA	NA	NA	NA	NA	inter
CUST_22064_PI429285431	3.5821764	P	3.2771776	A	1.23541760953502	0	lncRNA	23670-1_{1..1541}	lnc-COL9A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-COL9A2-1:1	chr1	 40722099	 40723639	-	lnc-COL9A2-1	lnc-COL9A2-1:1	ENSG00000259943.1	RP1-39G22.7	ZMPSTE24	NA	chr1:40723733-40733639	inter
CUST_12541_PI429285431	0.9182277	A	0.9231453	A	0.996597182176992	0	lncRNA	14152-1_{1..244}	lnc-MMP16-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MMP16-1:3	chr8	 89600620	 89600863	-	lnc-MMP16-1	lnc-MMP16-1:3	XLOC_007146	linc-MMP16-1	NA	NA	NA	inter
CUST_44072_PI429285431	1.7607585	A	2.895453	A	0.455431347117263	0	lncRNA	48742-1_{1..1298}	"gi|196259828|ref|NR_024079.1| Homo sapiens long intergenic non-protein coding RNA 471 (LINC00471), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|196259828|ref|NR_024079.1| Homo sapiens long intergenic non-protein coding RNA 471 (LINC00471), non-coding RNA"	Chr2	232373137	232374434	-	151477	NR_024079.1	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30"	NA	inter
CUST_123_PI429201921	2.9379742	A	3.6534154	P	0.609018855319097	0	lncRNA	117-1_{1..3000}	TC16001880.hg.1	TCONS_00024301-XLOC_011930 // Rinn lincRNAs // linc-ZNF423-2 chr16:-:49954640-49958065 // chr16 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr16:-:49954640-49958065	NA	Affy_HUMAN_HTA2.0	TCONS_00024301-XLOC_011930	linc-ZNF423-2	chr16	 49954640	 49958065	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003823	3.3032281	P	3.8213563	P	0.698277213538044	0	lncRNA	TCONS_00008729	NA	NA	NA	NA	XLOC_003411	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003411), lincRNA [TCONS_00008729]"	chr4:582581-582640	hs|4p16.3	Agilent_HUMAN_G3V2	TCONS_00008729	TCONS_00008729	chr4	   582581	   582640	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45878_PI429285431	1.174893	A	1.1447444	A	1.0211172970786	0	lncRNA	50201-2_{3001..4386}	"gi|219842349|ref|NR_026571.1| Homo sapiens NADPH oxidase 4 (NOX4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219842349|ref|NR_026571.1| Homo sapiens NADPH oxidase 4 (NOX4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_026571.1	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	Unknown
CUST_41518_PI429285431	2.4617305	A	2.8938763	A	0.741158598991839	0	lncRNA	42755-1_{1..110}	ENST00000385240 ncrna:miRNA chromosome:GRCh37:1:198828002:198828111:-1 gene:ENSG00000207975 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385240 ncrna:miRNA chromosome:GRCh37:1:198828002:198828111:-1 gene:ENSG00000207975 gene_biotype:miRNA transcript_biotype:miRNA	chr1	198828002	198828111	-	ENSG00000207975	ENST00000385240	NA	NA	NA	NA	NA	inter
CUST_17002_PI429285431	4.320982	P	4.1109505	P	1.15671343946834	0	lncRNA	18712-1_{1..1103}	lnc-LEPROTL1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-LEPROTL1-3:3	chr8	 29728666	 29729768	+	lnc-LEPROTL1-3	lnc-LEPROTL1-3:3	XLOC_006757	linc-LEPROTL1-2	NA	NA	NA	inter
LNCA_21_P0011700	3.4101217	P	3.4981194	P	0.9408276074162	0	lncRNA	TCONS_l2_00012572	NA	NA	NA	NA	XLOC_l2_006751	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006751), lincRNA [TCONS_l2_00012572]"	chr19:45121630-45121689	hs|19q13.31	Agilent_HUMAN_G3V2	TCONS_l2_00012572	TCONS_l2_00012572	chr19	 45121630	 45121689	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20660_PI429285431	1.0140404	A	0.89909744	A	1.08293222866325	0	lncRNA	22299-1_{1..538}	lnc-DPP4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DPP4-2:2	chr2	162107507	162108044	-	lnc-DPP4-2	lnc-DPP4-2:2	ENSG00000235724.1	AC009299.2	NA	NA	NA	inter
LNCA_21_P0014520	4.231988	P	4.642229	P	0.752497659622547	0	lncRNA	XR_110190	XR_110190	XR_110190	NA	NA	LOC100505475	uncharacterized LOC100505475	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505475 (LOC100505475), miscRNA [XR_110190]"	chr6:152702786-152702845	hs|6q25.2	Agilent_HUMAN_G3V2	XR_110190	XR_110190	chr6	152702786	152702845	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45607_PI429285431	4.928831	P	6.104174	P	0.442778476682318	0	lncRNA	49994-1_{1..1335}	"gi|224548988|ref|NR_027182.1| Homo sapiens uncharacterized LOC84989 (LOC84989), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224548988|ref|NR_027182.1| Homo sapiens uncharacterized LOC84989 (LOC84989), non-coding RNA"	Chr10	 65224989	 65226323	+	84989	NR_027182.1	NA	NA	NA	"hg19_refFlat_JMJD1C:range=chr10:64927805-652254225'pad=0,hg19_refFlat_JMJD1C:range=chr10:64927805-652254225'pad=0 3'pad=0 strand=- repeatMasking=none,-101.20"	NA	inter
LNCA_21_P0001780	3.2359145	P	3.1923835	P	1.03063321987031	0	lncRNA	AK311291	NA	AK311291	NA	Hs.570247	XLOC_001666	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001666), lincRNA [TCONS_00002721]"	chr2:129626091-129626150	hs|2q14.3	Agilent_HUMAN_G3V2	AK311291	AK311291	chr2	129626091	129626150	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16084_PI429285431	8.103785	P	8.333512	P	0.852796250436018	0	lncRNA	17787-1_{1..617}	lnc-HS1BP3-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HS1BP3-1:6	chr2	 20739648	 20740264	-	lnc-HS1BP3-1	lnc-HS1BP3-1:6	XLOC_002010	linc-PUM2-2	HS1BP3	NA	chr2:20729648-20749861	inter
CUST_27867_PI429285431	1.8229945	A	1.3952045	A	1.34517138990159	0	lncRNA	29460-1_{1..2231}	n325103|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329069|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329069|-0.8382610|-0.2520523	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325103|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329069|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329069|-0.8382610|-0.2520523	chr2	237621980	237624210	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16871_PI429285431	3.9384065	P	4.134264	P	0.873053821433319	0	lncRNA	18577-1_{1..741}	lnc-DAAM2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DAAM2-3:2	chr6	 40347021	 40347761	+	lnc-DAAM2-3	lnc-DAAM2-3:2	XLOC_005285	linc-TSPO2-2	NA	NA	NA	inter
CUST_47128_PI429285431	2.0791068	A	2.484044	A	0.755269168663105	0	lncRNA	51209-1_{1..2511}	"gi|339275813|ref|NR_040249.1| Homo sapiens cytochrome P450, family 2, subfamily G, polypeptide 1 pseudogene (CYP2G1P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|339275813|ref|NR_040249.1| Homo sapiens cytochrome P450, family 2, subfamily G, polypeptide 1 pseudogene (CYP2G1P), non-coding RNA"	Chr19	 41396731	 41399241	+	22952	NR_040249.1	NA	NA	NA	NA	NA	inter
CUST_15929_PI429285431	3.763401	P	3.9774272	P	0.862127888239736	0	lncRNA	17626-1_{1..1245}	lnc-UBXN10-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBXN10-1:2	chr1	 20528158	 20529402	+	lnc-UBXN10-1	lnc-UBXN10-1:2	XLOC_000082	linc-VWA5B1-2	UBXN10	NA	chr1:20518158-20519942	inter
CUST_14757_PI429285431	1.292493	A	1.7644702	A	0.720975829765969	0	lncRNA	16418-3_{6001..9000}	lnc-C20orf166-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf166-3:2	chr20	 61069579	 61072578	+	lnc-C20orf166-3	lnc-C20orf166-3:2	XLOC_013601	linc-C20orf166	NA	NA	NA	inter
CUST_39302_PI429285431	5.514469	P	5.0922623	P	1.3399755716953	0	lncRNA	40270-2_{3001..3875}	n386310|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gsj.1||7.0347700|-0.1504524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386310|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gsj.1||7.0347700|-0.1504524	chr22	 20390889	 20391763	-	NA	NA	NA	NA	TMEM191B	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20chr22:20377889-20380440"	NA	inter
CUST_15582_PI429285431	5.7192483	P	5.4280014	P	1.22369744439374	0	lncRNA	17267-1_{1..498}	lnc-CDC42EP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDC42EP1-1:1	chr22	 37947304	 37947801	+	lnc-CDC42EP1-1	lnc-CDC42EP1-1:1	XLOC_014235	linc-CDC42EP1-1	CDC42EP1	NA	chr22:37956471-37957742	inter
CUST_46791_PI429285431	7.2436666	P	7.3451443	P	0.932077809079322	0	lncRNA	50937-1_{1..1262}	"gi|359279928|ref|NR_045585.1| Homo sapiens stromal cell-derived factor 2 (SDF2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|359279928|ref|NR_045585.1| Homo sapiens stromal cell-derived factor 2 (SDF2), transcript variant 2, non-coding RNA"	Chr17	 26975374	 26976635	-	6388	NR_045585.1	NA	NA	NA	NA	NA	inter
CUST_25943_PI429285431	1.3975956	A	1.5456294	A	0.902479583584902	0	lncRNA	27462-1_{1..2196}	lnc-GAPDH-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-GAPDH-3:1	chr12	  6691810	  6694005	+	lnc-GAPDH-3	lnc-GAPDH-3:1	ENSG00000247853.2	RP5-940J5.6	CHD4	"hg19_refFlat_CHD4:range=chr12:6679842-67155395'pad=0,hg19_refFlat_CHD4:range=chr12:6679842-67155395'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60chr12:6681810-6703905"	NA	inner
CUST_33450_PI429285431	0.8995671	A	0.9062761	A	0.995360471582818	0	lncRNA	35027-2_{3001..5116}	n340184|BX538341|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2645|NULL|-0.9569270|-0.2985598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340184|BX538341|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2645|NULL|-0.9569270|-0.2985598	chr4	 96086658	 96088773	-	NA	NA	NA	NA	UNC5C	NA	chr4:96083655-96098750	inner
CUST_45718_PI429285431	2.9610488	P	2.789809	A	1.1260257348576	0	lncRNA	50085-1_{1..3000}	"gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	Chr11	  2629558	  2632557	-	10984	NR_002728.3	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.02;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0,hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_19449_PI429285431	7.6953917	P	7.086423	P	1.52516856359247	0	lncRNA	21108-1_{1..659}	lnc-IRX3-4:19	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IRX3-4:19	chr16	 54954210	 54954868	-	lnc-IRX3-4	lnc-IRX3-4:19	ENSG00000245694.4	CRNDE	NA	NA	NA	inter
CUST_20812_PI429285431	3.229092	P	3.1873345	A	1.02936704444683	0	lncRNA	22443-1_{1..3000}	lnc-TCTN3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCTN3-1:2	chr10	 97849739	 97852738	-	lnc-TCTN3-1	lnc-TCTN3-1:2	ENSG00000226688.1	RP11-429G19.2	NA	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_CC2D2B:range=chr10:97763985-977917655'pad=0,hg19_refFlat_CC2D2B:range=chr10:97763985-977917655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
LNCA_21_P0005731	0.9143616	A	0.9252707	A	0.99246690515628	0	lncRNA	TCONS_00014788	NA	NA	NA	NA	XLOC_006862	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006862), lincRNA [TCONS_00014788]"	chr8:82761351-82761410	hs|8q21.13	Agilent_HUMAN_G3V2	TCONS_00014788	TCONS_00014788	chr8	 82761351	 82761410	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12627_PI429285431	1.668567	A	2.112714	A	0.735018771379079	0	lncRNA	14243-1_{1..644}	lnc-NHP2L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NHP2L1-1:1	chr22	 42063130	 42063773	-	lnc-NHP2L1-1	lnc-NHP2L1-1:1	XLOC_014386	linc-PPPDE2	NHP2L1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40chr22:42069937-42073304"	NA	inter
CUST_12667_PI429285431	1.6444021	A	2.136406	A	0.711036783163787	0	lncRNA	14284-1_{1..966}	lnc-FRG1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRG1-2:1	chr4	190599831	190600796	+	lnc-FRG1-2	lnc-FRG1-2:1	XLOC_003842	linc-FRG1-2	NA	NA	NA	inter
CUST_30351_PI429285431	0.9085169	A	0.9051157	A	1.00236031335467	0	lncRNA	32127-1_{1..331}	n335445|AY684333|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257116_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257116_05|-1.2282700|-0.4123356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335445|AY684333|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257116_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257116_05|-1.2282700|-0.4123356	chr6	  3687182	  3687512	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43078_PI429285431	5.6115584	P	6.110763	P	0.707496737337447	0	lncRNA	47236-1_{1..121}	ENST00000408879 ncrna:snRNA chromosome:GRCh37:20:18591691:18591811:-1 gene:ENSG00000221806 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408879 ncrna:snRNA chromosome:GRCh37:20:18591691:18591811:-1 gene:ENSG00000221806 gene_biotype:snRNA transcript_biotype:snRNA	chr20	 18591691	 18591811	-	ENSG00000221806	ENST00000408879	NA	NA	DTD1	NA	chr20:18581691-18601811	inner
CUST_41112_PI429285431	1.305523	A	1.3066031	A	0.999251611912441	0	lncRNA	41865-1_{1..108}	ENST00000385198 ncrna:miRNA chromosome:GRCh37:1:156390123:156390230:1 gene:ENSG00000207933 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385198 ncrna:miRNA chromosome:GRCh37:1:156390123:156390230:1 gene:ENSG00000207933 gene_biotype:miRNA transcript_biotype:miRNA	chr1	156390123	156390230	+	ENSG00000207933	ENST00000385198	NA	NA	C1orf61	NA	chr1:156380123-156399184	inner
CUST_23261_PI429285431	4.5153346	P	4.899021	P	0.76647657174216	0	lncRNA	24833-1_{1..475}	lnc-E2F7-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-E2F7-3:1	chr12	 78485291	 78485765	-	lnc-E2F7-3	lnc-E2F7-3:1	ENSG00000258225.1	RP11-136F16.1	NAV3	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10chr12:78475291-78495517"	NA	inner
CUST_17706_PI429285431	4.423791	P	4.902663	P	0.717538426525669	0	lncRNA	19437-1_{1..1157}	lnc-RPS7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPS7-1:1	chr2	  3608907	  3610063	+	lnc-RPS7-1	lnc-RPS7-1:1	XLOC_001323	linc-RPS7-1	RNASEH1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-61.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr2:3598907-3605940"	NA	inter
CUST_5651_PI429285431	2.0025797	A	1.9633155	A	1.02758960410428	0	lncRNA	5578-2_{3001..6000}	"transcript_id ""ENST00000568107.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000568107.1"" | genecode_v17"	chr16	 81419874	 81422873	+	ENSG00000261609.1	ENST00000568107.1	MIR4720	MIR4720-001	GAN	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr16:81406874-81413803"	NA	inter
LNCA_21_P0008307	2.4997797	A	2.782314	A	0.822145531927325	0	lncRNA	TCONS_00022445	NA	NA	NA	NA	XLOC_010778	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010778), lincRNA [TCONS_00022445]"	chr14:27281593-27296972	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022445	TCONS_00022445	chr14	 27281593	 27296972	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37460_PI429285431	14.58665	P	14.444302	P	1.10369993715714	0	lncRNA	38559-1_{1..371}	n345912|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1461|NULL|-1.2905600|-0.2615675	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345912|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1461|NULL|-1.2905600|-0.2615675	chr5	 55800416	 55800786	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44158_PI429285431	7.9462214	P	8.538385	P	0.663347343188394	0	lncRNA	48819-1_{1..1388}	"gi|298286518|ref|NR_027437.2| Homo sapiens inositol hexakisphosphate kinase 2 (IP6K2), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298286518|ref|NR_027437.2| Homo sapiens inositol hexakisphosphate kinase 2 (IP6K2), transcript variant 7, non-coding RNA"	Chr3	 48730881	 48732268	-	51447	NR_027437.2	NA	NA	NA	NA	NA	inter
CUST_13696_PI429285431	1.1803107	A	1.0969166	A	1.05950772014281	0	lncRNA	15336-1_{1..462}	lnc-IRF8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRF8-2:1	chr16	 86060888	 86061349	+	lnc-IRF8-2	lnc-IRF8-2:1	XLOC_011810	linc-FOXF1-5	NA	NA	NA	inter
LNCA_32_P111336	0.90975356	A	0.91197103	A	0.998464147551899	0	lncRNA	XR_108657	XR_108657	XR_108657	100131283	Hs.664979	LOC100131283	uncharacterized LOC100131283	NA	THC2774873	NA	"PREDICTED: Homo sapiens hypothetical LOC100131283, transcript variant 2 (LOC100131283), miscRNA [XR_108657]"	chr6:46638287-46638228	hs|6p12.3	Agilent_HUMAN_G3V2	XR_108657	XR_108657	chr6	 46638228	 46638287	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28959_PI429285431	1.8801378	A	2.2295437	A	0.784907255172979	0	lncRNA	30680-1_{1..425}	n326389|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097809|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097809|-1.1286400|-0.4124874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326389|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097809|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097809|-1.1286400|-0.4124874	chr1	147199408	147199832	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15333_PI429285431	1.1691	A	0.91712093	A	1.1908395730506	0	lncRNA	17012-1_{1..288}	lnc-FGFR2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGFR2-2:1	chr10	123072730	123073017	-	lnc-FGFR2-2	lnc-FGFR2-2:1	XLOC_008971	linc-C10orf119-4	NA	NA	NA	inter
CUST_27232_PI429285431	2.5476263	A	2.9755409	A	0.743335492486132	0	lncRNA	28777-1_{1..491}	n324368|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042462|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042462|-0.8456880|-0.2736486	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324368|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042462|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042462|-0.8456880|-0.2736486	chr6	139670511	139671001	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8058_PI429285431	8.193461	P	8.345894	P	0.89973185028993	0	lncRNA	9665-1_{1..1903}	lnc-TAF12-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TAF12-1:3	chr1	 28907072	 28908974	-	lnc-TAF12-1	lnc-TAF12-1:3	ENSG00000197989	SNHG12	TRNAU1AP	NA	chr1:28897072-28905057	inter
CUST_25891_PI429285431	2.2952104	A	2.7023635	A	0.754110007314476	0	lncRNA	27410-1_{1..92}	lnc-ROM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ROM1-1:1	chr11	 62373858	 62373949	+	lnc-ROM1-1	lnc-ROM1-1:1	ENSG00000254964.1	RP11-831H9.3	EML3	"hg19_refFlat_EML3:range=chr11:62369947-623799295'pad=0,hg19_refFlat_EML3:range=chr11:62369947-623799295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20chr11:62369691-62380237"	NA	inner
CUST_24460_PI429285431	0.9008246	A	0.91937053	A	0.987227214261474	0	lncRNA	26013-1_{1..1775}	lnc-PAX9-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-PAX9-3:1	chr14	 36990849	 36992623	+	lnc-PAX9-3	lnc-PAX9-3:1	ENSG00000253563.2	NKX2-1-AS1	SFTA3	"hg19_refFlat_NKX2-1:range=chr14:36986483-369885625'pad=0,hg19_refFlat_NKX2-1:range=chr14:36986483-369885625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_NKX2-1:range=chr14:36986483-369893345'pad=0,hg19_refFlat_NKX2-1:range=chr14:36986483-369893345'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30chr14:36980849-36982990"	NA	inter
LNCA_21_P0014443	5.0495	P	4.446666	P	1.51869693479811	0	lncRNA	XR_109833	XR_109833	XR_109833	NA	NA	LOC100507473	uncharacterized LOC100507473	NA	THC2548652	NA	"PREDICTED: Homo sapiens hypothetical LOC100507473 (LOC100507473), miscRNA [XR_109833]"	chr4:77969037-77969096	hs|4q21.1	Agilent_HUMAN_G3V2	XR_109833	XR_109833	chr4	 77969037	 77969096	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001617	1.2144606	A	1.9512818	A	0.600060054850804	0	lncRNA	TCONS_00001800	NA	NA	NA	NA	XLOC_001189	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001189), lincRNA [TCONS_00001800]"	chr1:211431715-211431656	hs|1q32.2	Agilent_HUMAN_G3V2	TCONS_00001800	TCONS_00001800	chr1	211431656	211431715	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2226_PI429285431	0.908211	A	0.92059755	A	0.99145104967639	0	lncRNA	2218-1_{1..785}	"transcript_id ""ENST00000505348.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505348.1"" | genecode_v17"	chr5	 85630842	 85631626	+	ENSG00000248195.1	ENST00000505348.1	CTC-261N6.3	CTC-261N6.3-001	NA	NA	NA	inter
CUST_10585_PI429285431	0.88772684	A	1.0038846	A	0.922641595449192	0	lncRNA	12115-1_{1..508}	lnc-PPP1R3A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP1R3A-1:1	chr7	113715681	113716188	-	lnc-PPP1R3A-1	lnc-PPP1R3A-1:1	XLOC_006566	linc-PPP1R3A-2	NA	NA	NA	inter
CUST_27711_PI429285431	2.3115191	A	2.7021146	A	0.762814673126577	0	lncRNA	29290-1_{1..391}	n324922|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079958|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079958|-0.9519390|-0.3034949	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324922|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079958|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079958|-0.9519390|-0.3034949	chr20	 59087590	 59087980	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006258	0.89982694	A	0.9850252	A	0.942654984201461	0	lncRNA	TCONS_00016284	NA	NA	NA	NA	XLOC_007658	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007658), lincRNA [TCONS_00016284]"	chr9:23438611-23264328	hs|9p21.3	Agilent_HUMAN_G3V2	TCONS_00016284	TCONS_00016284	chr9	 23264328	 23438611	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38984_PI429285431	0.90873885	A	0.8980299	A	1.00745049635423	0	lncRNA	39967-1_{1..1976}	n385223|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ufr.2||0.5725290|-0.2549565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385223|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ufr.2||0.5725290|-0.2549565	chr7	 76178657	 76180632	+	NA	NA	NA	NA	LOC100288807	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80chr7:76168657-76170776"	NA	inter
CUST_27051_PI429285431	0.8993724	A	1.0385973	A	0.908006858587653	0	lncRNA	28585-1_{1..537}	n324162|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051553|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051553|-1.1735500|-0.3363183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324162|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051553|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051553|-1.1735500|-0.3363183	chr9	  3664545	  3665081	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13995_PI429285431	1.1982026	A	1.1733623	A	1.01736706780649	0	lncRNA	15640-1_{1..325}	lnc-KIAA1919-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1919-1:3	chr6	111619758	111620082	+	lnc-KIAA1919-1	lnc-KIAA1919-1:3	XLOC_005426	linc-WISP3-3	REV3L	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40chr6:111620234-111629807"	NA	inter
LNCA_21_P0013758	0.89620036	A	1.0918365	A	0.873187788776078	0	lncRNA	TCONS_l2_00030175	NA	NA	NA	NA	XLOC_l2_015482	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015482), lincRNA [TCONS_l2_00030175]"	chrX:36737946-36738005	hs|Xp21.1	Agilent_HUMAN_G3V2	TCONS_l2_00030175	TCONS_l2_00030175	chrX	 36737946	 36738005	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48555_PI429285431	1.9777217	A	2.7932656	A	0.568194235443751	0	lncRNA	52403-1_{1..1999}	hg19_lincRNAsTranscripts_TCONS_l2_00014916 range=chr2:132905136-132920047 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014916 range=chr2:132905136-132920047 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	132905136	132907134	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2555_PI429285431	5.6737833	P	6.0665636	P	0.761660350036919	0	lncRNA	2543-1_{1..475}	"transcript_id ""ENST00000441570.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441570.1"" | genecode_v17"	chr6	 72126180	 72126654	-	ENSG00000233237.2	ENST00000441570.1	LINC00472	LINC00472-002	NA	NA	NA	inter
CUST_24026_PI429285431	3.3588057	P	3.7691357	P	0.752451239399224	0	lncRNA	25578-1_{1..563}	lnc-ZNF236-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF236-1:3	chr18	 74691312	 74691874	+	lnc-ZNF236-1	lnc-ZNF236-1:3	ENSG00000266844.1	RP11-862L9.3	MBP	NA	chr18:74690789-74701509	inner
CUST_30224_PI429285431	4.8754025	P	4.579334	P	1.22779397890364	0	lncRNA	31999-1_{1..325}	n335087|AJ786388|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249409|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249409|1.2627600|-0.3353057	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335087|AJ786388|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249409|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249409|1.2627600|-0.3353057	chr3	 30691911	 30692235	+	NA	NA	NA	NA	TGFBR2	NA	chr3:30681911-30723307	inner
CUST_27819_PI429285431	0.9030895	A	0.91588855	A	0.991167611330476	0	lncRNA	29405-1_{1..390}	n325047|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078248|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078248|-1.2091700|-0.3794928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325047|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078248|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078248|-1.2091700|-0.3794928	chr20	 20650316	 20650705	-	NA	NA	NA	NA	RALGAPA2	NA	chr20:20640316-20661034	inner
CUST_5781_PI429285431	3.0829997	P	2.5700958	A	1.42691945338679	0	lncRNA	5704-1_{1..549}	"transcript_id ""ENST00000579836.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579836.1"" | genecode_v17"	chr17	 21771663	 21772211	-	ENSG00000263609.1	ENST00000579836.1	RP11-1109M24.16	RP11-1109M24.16-002	NA	NA	NA	inter
CUST_45205_PI429285431	0.90119314	A	1.0900697	A	0.877288608166721	0	lncRNA	49668-1_{1..1119}	"gi|300795727|ref|NR_034102.1| Homo sapiens uncharacterized LOC100130155 (LOC100130155), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ncbi,"	">gi|300795727|ref|NR_034102.1| Homo sapiens uncharacterized LOC100130155 (LOC100130155), non-coding RNA"	Chr8	 65285775	 65286893	+	100130155	NR_034102.1	NA	NA	NA	NA	NA	inter
CUST_29536_PI429285431	0.88805914	A	1.0253947	A	0.909196754888358	0	lncRNA	31295-1_{1..505}	n333002|AF147343|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071416|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071416|2.5166100|-0.2995328	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333002|AF147343|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071416|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071416|2.5166100|-0.2995328	chr2	153441932	153442436	-	NA	NA	NA	NA	FMNL2	NA	chr2:153431932-153452437	inner
CUST_25895_PI429285431	7.6484337	P	7.822396	P	0.886404862112692	0	lncRNA	27414-1_{1..450}	lnc-RORA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RORA-1:1	chr15	 61927614	 61928063	-	lnc-RORA-1	lnc-RORA-1:1	ENSG00000259616.1	RP11-507B12.2	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70"	NA	inter
CUST_25704_PI429285431	1.549472	A	2.305259	A	0.59222323551804	0	lncRNA	27232-1_{1..770}	lnc-TMED5-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMED5-1:4	chr1	 93811281	 93812050	-	lnc-TMED5-1	lnc-TMED5-1:4	ENSG00000223745.1	RP4-717I23.3	DR1	NA	chr1:93811478-93821388	inter
CUST_6318_PI429285431	6.163343	P	6.7366443	P	0.672077122306917	0	lncRNA	6241-1_{1..402}	"transcript_id ""ENST00000587632.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587632.1"" | genecode_v17"	chr19	  5561643	  5562044	-	ENSG00000223573.2	ENST00000587632.1	TINCR	TINCR-002	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40"	NA	inter
CUST_30045_PI429285431	2.8803926	A	0.9040919	A	3.93482834438345	0	lncRNA	31814-1_{1..361}	n334548|U52096|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220240|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220240|1.7322300|-0.1411673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334548|U52096|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220240|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220240|1.7322300|-0.1411673	chr19	 53269495	 53269855	-	NA	NA	NA	NA	ZNF600	NA	chr19:53268747-53279856	inner
CUST_31986_PI429285431	0.89572805	A	1.0435225	A	0.902629321680355	0	lncRNA	33708-1_{1..2299}	n338545|AK095901|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|949|NULL|-1.0776600|-0.2673928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338545|AK095901|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|949|NULL|-1.0776600|-0.2673928	chr1	226920313	226922611	-	NA	NA	NA	NA	ITPKB	NA	chr1:226910313-226926876	inner
LNCA_21_P0001390	0.8962553	A	0.89141524	A	1.00336050783089	0	lncRNA	TCONS_00001210	NA	NA	NA	NA	XLOC_000476	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000476), lincRNA [TCONS_00001210]"	chr1:180103745-180103804	hs|1q25.2	Agilent_HUMAN_G3V2	TCONS_00001210	TCONS_00001210	chr1	180103745	180103804	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48635_PI429285431	1.147063	A	0.9131354	A	1.17603223097809	0	lncRNA	52482-1_{1..749}	hg19_lincRNAsTranscripts_TCONS_l2_00013770 range=chr2:89103602-89106098 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013770 range=chr2:89103602-89106098 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 89103602	 89104350	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26310_PI429285431	0.90217865	A	0.9057088	A	0.997556077733156	0	lncRNA	27816-1_{1..536}	lnc-C11orf39-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf39-2:3	chr11	131410414	131410949	-	lnc-C11orf39-2	lnc-C11orf39-2:3	ENSG00000237654.1	AP003025.2	NTM	NA	chr11:131400414-131420492	inner
CUST_17016_PI429285431	6.5473213	P	6.1900616	P	1.28099043207776	0	lncRNA	18727-1_{1..1397}	lnc-ADCY9-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADCY9-1:4	chr16	  4000273	  4001669	-	lnc-ADCY9-1	lnc-ADCY9-1:4	XLOC_011865	linc-CREBBP	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10"	NA	inter
CUST_4437_PI429285431	0.8972545	A	0.89792824	A	0.999533108046555	0	lncRNA	4387-1_{1..552}	"transcript_id ""ENST00000557474.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557474.1"" | genecode_v17"	chr12	121829765	121830316	+	ENSG00000258435.1	ENST00000557474.1	RP11-711D18.2	RP11-711D18.2-001	RNF34	NA	chr12:121837902-121847662	inter
CUST_39462_PI429285431	3.6559918	P	5.069612	P	0.375368579890924	0	lncRNA	40406-1_{1..845}	n387010|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wia.1||-0.0642629|-0.2362372	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387010|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wia.1||-0.0642629|-0.2362372	chr17	 41381731	 41382575	+	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20"	NA	inter
LNCA_21_P0011784	1.561661	A	1.8259493	A	0.832609370317366	0	lncRNA	THC2631745	NA	NA	NA	NA	XLOC_l2_007167	NA	NA	THC2631745	NA	"BROAD Institute lincRNA (XLOC_l2_007167), lincRNA [TCONS_l2_00013420]"	chr2:000749305-000749364	hs|2p25.3	Agilent_HUMAN_G3V2	THC2631745	THC2631745	chr2	   749305	   749364	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38355_PI429285431	4.913392	P	2.891313	A	4.06168680978241	0	lncRNA	39397-2_{3001..4651}	n382120|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vvr.1||1.2489000|-0.2980283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n382120|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vvr.1||1.2489000|-0.2980283	chr14	 19883208	 19884858	-	NA	NA	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.30"	NA	inter
CUST_49581_PI429285431	0.90015256	A	0.8949497	A	1.00361285843612	0	lncRNA	53370-1_{1..261}	hg19_lincRNAsTranscripts_TCONS_l2_00024454 range=chr6:141079071-141105797 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024454 range=chr6:141079071-141105797 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	141079071	141079331	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3613_PI429285431	1.1556702	A	1.117423	A	1.02686547992186	0	lncRNA	3583-1_{1..820}	"transcript_id ""ENST00000458727.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000458727.1"" | genecode_v17"	chr10	  8094206	  8095025	-	ENSG00000243350.1	ENST00000458727.1	RP11-379F12.3	RP11-379F12.3-001	GATA3	NA	chr10:8096667-8105412	inter
CUST_28239_PI429285431	0.89467704	A	1.1548285	A	0.835000253100001	0	lncRNA	29874-1_{1..1956}	n325530|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255286|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255286|-1.2072800|-0.4056853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325530|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255286|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255286|-1.2072800|-0.4056853	chr17	 67911063	 67913018	-	NA	NA	NA	NA	KCNJ16	NA	chr17:68071426-68110536	inner
CUST_45412_PI429285431	8.534431	P	8.270518	P	1.20073101665317	0	lncRNA	49838-1_{1..2422}	"gi|224586805|ref|NR_027261.1| Homo sapiens polymerase (DNA directed), epsilon 3, accessory subunit (POLE3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224586805|ref|NR_027261.1| Homo sapiens polymerase (DNA directed), epsilon 3, accessory subunit (POLE3), non-coding RNA"	Chr9	116169515	116171936	-	54107	NR_027261.1	NA	NA	NA	NA	NA	inter
CUST_33109_PI429285431	6.8889275	P	6.8642306	P	1.01726594928658	0	lncRNA	34710-1_{1..3000}	n339799|BC040310|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2246|NULL|0.5216030|-0.1984485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n339799|BC040310|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2246|NULL|0.5216030|-0.1984485	chr18	 13486460	 13489459	+	NA	NA	NA	NA	C18orf1	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr18:13476460-13500675"	NA	inner
CUST_14049_PI429285431	1.7238395	A	1.6313912	A	1.06617798648759	0	lncRNA	15695-1_{1..2162}	lnc-AFG3L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AFG3L2-1:1	chr18	 12234300	 12236461	-	lnc-AFG3L2-1	lnc-AFG3L2-1:1	XLOC_012774	linc-MPPE1-3	NA	NA	NA	inter
CUST_51050_PI429285431	1.3286015	A	1.5462718	A	0.859952989383163	0	lncRNA	54692-1_{1..547}	hg19_lincRNAsTranscripts_TCONS_l2_00006722 range=chr13:21925195-21929200 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006722 range=chr13:21925195-21929200 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 21925195	 21925741	+	NA	NA	NA	NA	ZDHHC20	NA	chr13:21932515-21939200	inter
CUST_10281_PI429285431	2.2086673	A	2.2481542	A	0.973000937380945	0	lncRNA	11807-1_{1..1109}	lnc-DNAJB11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAJB11-1:1	chr3	186212484	186213592	+	lnc-DNAJB11-1	lnc-DNAJB11-1:1	XLOC_002960	linc-DNAJB11-1	NA	NA	NA	inter
CUST_12353_PI429285431	0.8992767	A	0.8955853	A	1.00256195972663	0	lncRNA	13965-1_{1..214}	lnc-HMGB2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HMGB2-4:1	chr4	174048772	174048985	-	lnc-HMGB2-4	lnc-HMGB2-4:1	XLOC_004161	linc-AADAT-1	NA	NA	NA	inter
CUST_13330_PI429285431	11.298151	P	11.975174	P	0.62545456873952	0	lncRNA	14966-1_{1..920}	lnc-ERLIN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERLIN2-1:1	chr8	 37590596	 37591515	+	lnc-ERLIN2-1	lnc-ERLIN2-1:1	XLOC_006775	linc-ERLIN2	ERLIN2	NA	chr8:37594097-37601177	inter
CUST_47020_PI429285431	5.3516574	P	6.0459447	P	0.618014546056262	0	lncRNA	51113-2_{3001..4080}	"gi|385275062|ref|NR_047652.1| Homo sapiens histocompatibility (minor) HA-1 (HMHA1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385275062|ref|NR_047652.1| Homo sapiens histocompatibility (minor) HA-1 (HMHA1), transcript variant 3, non-coding RNA"	Chr19	  1079633	  1080712	+	23526	NR_047652.1	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40"	NA	inter
CUST_34646_PI429285431	1.1402389	A	0.903443	A	1.17837269005611	0	lncRNA	36099-1_{1..3000}	n341545|BC004287|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4016|NULL|-1.2351700|-0.3444545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341545|BC004287|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4016|NULL|-1.2351700|-0.3444545	chr8	 81540691	 81543690	-	NA	NA	NA	NA	ZNF704	NA	chr8:81530691-81553847	inner
CUST_43968_PI429285431	9.262929	P	8.203071	P	2.08472631843553	0	lncRNA	48672-2_{3001..4424}	"gi|388556554|ref|NR_049792.1| Homo sapiens pleckstrin homology domain containing, family B (evectins) member 2 (PLEKHB2), transcript variant 14, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388556554|ref|NR_049792.1| Homo sapiens pleckstrin homology domain containing, family B (evectins) member 2 (PLEKHB2), transcript variant 14, non-coding RNA"	Chr2	131865420	131866843	+	55041	NR_049792.1	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.04"	NA	inter
CUST_49246_PI429285431	1.7694502	A	1.8716068	A	0.931639297306454	0	lncRNA	53066-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00022197 range=chr5:10564450-10657959 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022197 range=chr5:10564450-10657959 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 10570450	 10573449	+	NA	NA	NA	NA	ANKRD33B	NA	chr5:10564435-10657928	inner
CUST_22836_PI429285431	0.90012217	A	0.9054662	A	0.996302652755896	0	lncRNA	24415-1_{1..1223}	lnc-RP11-324D17.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-RP11-324D17.2.1-2:1	chr16	 54073458	 54074680	+	lnc-RP11-324D17.2.1-2	lnc-RP11-324D17.2.1-2:1	ENSG00000260936.1	FTO-IT1	FTO	NA	chr16:54063458-54084638	inner
CUST_25235_PI429285431	0.9072586	A	0.9127038	A	0.996232788784362	0	lncRNA	26766-1_{1..456}	lnc-C12orf39-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C12orf39-1:2	chr12	 21919290	 21919745	+	lnc-C12orf39-1	lnc-C12orf39-1:2	ENSG00000255644.1	RP11-59N23.1	KCNJ8	"hg19_refFlat_KCNJ8:range=chr12:21918657-219265505'pad=0,hg19_refFlat_KCNJ8:range=chr12:21918657-219265505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70chr12:21917889-21927747"	NA	inner
CUST_4833_PI429285431	0.8954475	A	1.1352522	A	0.846859945426677	0	lncRNA	4776-1_{1..568}	"transcript_id ""ENST00000555643.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555643.1"" | genecode_v17"	chr14	 55663445	 55664012	-	ENSG00000258050.2	ENST00000555643.1	RP11-698F20.3	RP11-698F20.3-001	DLGAP5	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-19.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-17.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70chr14:55653445-55658396"	NA	inter
CUST_49921_PI429285431	5.569114	P	5.730432	P	0.894207778061456	0	lncRNA	53671-1_{1..255}	hg19_lincRNAsTranscripts_TCONS_l2_00026782 range=chr7:97599344-97599689 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026782 range=chr7:97599344-97599689 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 97599344	 97599598	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43786_PI429285431	1.1260904	A	1.2635458	A	0.909121233998119	0	lncRNA	48517-1_{1..1898}	"gi|364502956|ref|NR_045659.1| Homo sapiens collectin sub-family member 11 (COLEC11), transcript variant 11, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|364502956|ref|NR_045659.1| Homo sapiens collectin sub-family member 11 (COLEC11), transcript variant 11, non-coding RNA"	Chr2	  3642422	  3644319	+	78989	NR_045659.1	NA	NA	NA	NA	NA	inter
CUST_31736_PI429285431	0.89564204	A	0.8886235	A	1.0048767339602	0	lncRNA	33477-1_{1..381}	n338271|U61095|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|664|NULL|-1.0493100|-0.3949499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338271|U61095|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|664|NULL|-1.0493100|-0.3949499	chr14	 41984174	 41984554	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24566_PI429285431	1.0519413	A	0.93091226	A	1.08751028112263	0	lncRNA	26114-1_{1..759}	lnc-KIAA1267-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1267-1:1	chr17	 43988101	 43988859	-	lnc-KIAA1267-1	lnc-KIAA1267-1:1	ENSG00000262881.1	RP11-669E14.4	MAPT	NA	chr17:43978101-43998145	inner
CUST_37873_PI429285431	2.332842	A	2.7448025	A	0.75160131707926	0	lncRNA	38966-1_{1..3000}	n346410|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1960|NULL|-1.5084800|-0.2385442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346410|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1960|NULL|-1.5084800|-0.2385442	chr14	106049138	106052137	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49072_PI429285431	5.0568347	P	5.221431	P	0.892178136917918	0	lncRNA	52897-1_{1..751}	hg19_lincRNAsTranscripts_TCONS_l2_00021821 range=chr4:3949251-3954892 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021821 range=chr4:3949251-3954892 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  3949251	  3950001	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39401_PI429285431	0.8981781	A	1.5037754	A	0.657199232239238	0	lncRNA	40361-4_{9001..12000}	n386585|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010pbf.1||1.3938300|-0.2144233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386585|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010pbf.1||1.3938300|-0.2144233	chr1	149288475	149291474	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-14.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-55.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90"	NA	inter
CUST_46068_PI429285431	5.1208634	P	5.190132	P	0.953121077322081	0	lncRNA	50341-1_{1..3000}	"gi|302191712|ref|NR_036477.1| Homo sapiens transmembrane protein 198B, pseudogene (TMEM198B), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|302191712|ref|NR_036477.1| Homo sapiens transmembrane protein 198B, pseudogene (TMEM198B), transcript variant 2, non-coding RNA"	Chr12	 56223392	 56226391	+	440104	NR_036477.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20"	NA	inter
CUST_19838_PI429285431	2.1208808	A	2.6285331	A	0.703366095876734	0	lncRNA	21495-1_{1..493}	lnc-ZNF366-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF366-5:1	chr5	 72111980	 72112472	-	lnc-ZNF366-5	lnc-ZNF366-5:1	ENSG00000249085.1	CTD-2631K10.1	TNPO1	NA	chr5:72101980-72122392	inter
CUST_7451_PI429285431	1.6624897	A	2.3108778	A	0.637992734633726	0	lncRNA	9094-1_{1..610}	lnc-WDR74-1:19	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR74-1:19	chr11	 62622896	 62623505	-	lnc-WDR74-1	lnc-WDR74-1:19	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62632932	inter
CUST_10490_PI429285431	9.649929	P	9.226957	P	1.34068657112056	0	lncRNA	12018-1_{1..306}	lnc-APOL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APOL1-1:1	chr22	 36806072	 36806377	+	lnc-APOL1-1	lnc-APOL1-1:1	XLOC_014226	linc-NCF4-4	NA	NA	NA	inter
CUST_7977_PI429285431	0.9111498	A	0.9233773	A	0.99156035828118	0	lncRNA	9589-1_{1..572}	lnc-SULF1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SULF1-3:4	chr8	 70766907	 70767478	+	lnc-SULF1-3	lnc-SULF1-3:4	ENSG00000246528	RP11-159H10.3	NA	NA	NA	inter
LNCA_21_P0008198	1.2343574	A	0.925403	A	1.23880954147835	0	lncRNA	TCONS_00022082	NA	NA	NA	NA	XLOC_010688	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010688), lincRNA [TCONS_00022082]"	chr13:91508689-91508630	hs|13q31.3	Agilent_HUMAN_G3V2	TCONS_00022082	TCONS_00022082	chr13	 91508630	 91508689	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2320_PI429285431	4.595442	P	4.7334805	P	0.908753864968028	0	lncRNA	2312-1_{1..707}	"transcript_id ""ENST00000504419.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504419.1"" | genecode_v17"	chr5	116078687	116079393	-	ENSG00000251311.1	ENST00000504419.1	RP11-249M12.2	RP11-249M12.2-001	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50"	NA	inter
CUST_39541_PI429285431	1.4302806	A	1.6379588	A	0.865929693722127	0	lncRNA	40486-1_{1..692}	n387452|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ejz.1||-1.1716400|-0.3146328	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387452|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ejz.1||-1.1716400|-0.3146328	chr6	  1214064	  1214755	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17037_PI429285431	4.06494	P	4.5888653	P	0.695476995396245	0	lncRNA	18748-1_{1..637}	lnc-VSIG10L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VSIG10L-1:1	chr19	 51774273	 51774909	-	lnc-VSIG10L-1	lnc-VSIG10L-1:1	XLOC_013387	linc-CTU1-1	IGLON5	NA	chr19:51784089-51784824	inter
CUST_19719_PI429285431	1.5918484	A	2.0081656	A	0.749335029254968	0	lncRNA	21376-1_{1..941}	lnc-PLAU-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLAU-2:1	chr10	 75789125	 75790065	+	lnc-PLAU-2	lnc-PLAU-2:1	ENSG00000226458.1	RP11-417O11.6	VCL	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90chr10:75779125-75799962"	NA	inner
LNCA_21_P0002526	1.8513713	A	1.3936157	A	1.37340355205797	0	lncRNA	TCONS_00004518	NA	NA	NA	NA	XLOC_002424	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002424), lincRNA [TCONS_00004518]"	chr2:186001997-186001938	hs|2q32.1	Agilent_HUMAN_G3V2	TCONS_00004518	TCONS_00004518	chr2	186001938	186001997	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17013_PI429285431	3.0496595	A	0.8889936	A	4.47121183860715	0	lncRNA	18724-1_{1..695}	lnc-ZNF791-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF791-2:1	chr19	 12571373	 12572067	+	lnc-ZNF791-2	lnc-ZNF791-2:1	XLOC_012971	linc-ZNF791-2	ZNF709	NA	chr19:12571998-12581519	inter
CUST_21469_PI429285431	2.9743378	A	3.3827097	P	0.753473198339019	0	lncRNA	23088-1_{1..942}	lnc-KDM5D-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KDM5D-2:2	chrY	 21664918	 21665859	-	lnc-KDM5D-2	lnc-KDM5D-2:2	ENSG00000215580.4	BCORP1	NA	NA	NA	inter
CUST_34432_PI429285431	0.90246934	A	0.9148844	A	0.991431457185022	0	lncRNA	35912-1_{1..585}	n341309|BC031318|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3778|NULL|-1.1723600|-0.2510791	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n341309|BC031318|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3778|NULL|-1.1723600|-0.2510791	chr7	123977433	123978017	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49778_PI429285431	7.064975	P	7.3552628	P	0.817738913382667	0	lncRNA	53538-1_{1..547}	hg19_lincRNAsTranscripts_TCONS_l2_00026593 range=chr7:56947712-56950089 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026593 range=chr7:56947712-56950089 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 56947712	 56948258	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40"	NA	inter
CUST_29541_PI429285431	4.527677	P	3.0928876	P	2.70342699963864	0	lncRNA	31300-1_{1..638}	n333016|AF147416|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071489|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071489|-1.1562300|-0.3105421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333016|AF147416|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071489|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071489|-1.1562300|-0.3105421	chr14	100744715	100745352	+	NA	NA	NA	NA	YY1	NA	chr14:100734715-100744804	inner
CUST_16054_PI429285431	0.9015047	A	0.90600103	A	0.996888233151434	0	lncRNA	17754-1_{1..358}	lnc-WRN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRN-2:1	chr8	 30758891	 30759248	+	lnc-WRN-2	lnc-WRN-2:1	XLOC_006762	linc-WRN-1	NA	NA	NA	inter
CUST_49178_PI429285431	2.028755	A	2.184731	A	0.897524981348918	0	lncRNA	53002-1_{1..1089}	hg19_lincRNAsTranscripts_TCONS_l2_00021322 range=chr4:142240714-142253752 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021322 range=chr4:142240714-142253752 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	142240714	142241802	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40"	NA	inter
CUST_27385_PI429285431	3.0534804	A	3.7393715	P	0.621621755008529	0	lncRNA	28947-1_{1..1176}	n324547|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257580|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257580|0.7945500|-0.2319362	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324547|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257580|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257580|0.7945500|-0.2319362	chr6	 30857713	 30858888	+	NA	NA	NA	NA	DDR1	NA	chr6:30851861-30867933	inner
CUST_23333_PI429285431	0.8958401	A	0.89879453	A	0.997954240599411	0	lncRNA	24904-1_{1..289}	lnc-C7orf62-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C7orf62-3:1	chr7	 89899404	 89899692	-	lnc-C7orf62-3	lnc-C7orf62-3:1	ENSG00000234459.1	AC002064.4	C7orf63	NA	chr7:89889404-89909530	inner
CUST_39621_PI429285431	11.394489	P	11.219808	P	1.12871480262278	0	lncRNA	40560-1_{1..1327}	n387722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011mfi.1||4.6126500|-0.3104665	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011mfi.1||4.6126500|-0.3104665	chrM	     8663	     9989	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38422_PI429285431	3.5058112	P	3.6297028	P	0.917708833751236	0	lncRNA	39451-1_{1..3000}	n382509|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zqh.2||3.7403400|-0.3353605	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n382509|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zqh.2||3.7403400|-0.3353605	chr15	 42922039	 42925038	+	NA	NA	NA	NA	STARD9	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-14.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_XPNPEP3:range=chr22:41253186-412567855'pad=0,hg19_refFlat_XPNPEP3:range=chr22:41253186-412567855'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.44chr15:42912039-42975295"	NA	inner
CUST_5467_PI429285431	7.4618554	P	7.8074164	P	0.787001886994727	0	lncRNA	5400-1_{1..432}	"transcript_id ""ENST00000563176.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563176.1"" | genecode_v17"	chr16	 25111885	 25112316	-	ENSG00000260448.1	ENST00000563176.1	RP11-449H11.1	RP11-449H11.1-003	LCMT1	NA	chr16:25123047-25132735	inter
CUST_36628_PI429285431	6.334146	P	6.414031	P	0.946133061808201	0	lncRNA	37821-1_{1..358}	n345124|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_673|NULL|-1.3267100|-0.2420245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345124|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_673|NULL|-1.3267100|-0.2420245	chr10	 80209193	 80209550	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51787_PI429285431	15.611527	P	15.275427	P	1.26233952778817	0	lncRNA	55336-1_{1..644}	hg19_lincRNAsTranscripts_TCONS_l2_00012874 range=chr19:12754027-12754774 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012874 range=chr19:12754027-12754774 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 12754027	 12754670	-	NA	NA	NA	NA	MAN2B1	NA	chr19:12754034-12764774	inter
CUST_49095_PI429285431	10.828846	P	10.889841	P	0.958602760751224	0	lncRNA	52919-1_{1..1914}	hg19_lincRNAsTranscripts_TCONS_l2_00020420 range=chr4:11371127-11375365 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020420 range=chr4:11371127-11375365 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 11371127	 11373040	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10280_PI429285431	0.8995668	A	1.305611	A	0.754689862393244	0	lncRNA	11805-1_{1..298}	lnc-ATP10A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP10A-2:2	chr15	 26360738	 26361035	-	lnc-ATP10A-2	lnc-ATP10A-2:2	XLOC_011406	linc-ATP10A-3	NA	NA	NA	inter
CUST_130_PI429285431	7.4629207	P	7.3914227	P	1.05080720671209	0	lncRNA	122-1_{1..446}	"transcript_id ""ENST00000427857.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427857.1"" | genecode_v17"	chr1	   803783	   804228	-	ENSG00000230368.2	ENST00000427857.1	FAM41C	FAM41C-002	NA	NA	NA	inter
CUST_31940_PI429285431	5.860476	P	6.0764766	P	0.860948830280277	0	lncRNA	33668-1_{1..3000}	n338497|CR627061|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|894|NULL|-1.0032500|-0.2527727	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338497|CR627061|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|894|NULL|-1.0032500|-0.2527727	chr19	 32078945	 32081944	-	NA	NA	NA	NA	THEG5	"hg19_refFlat_THEG5:range=chr19:32083187-320839455'pad=0,hg19_refFlat_THEG5:range=chr19:32083187-320839455'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.30chr19:32083187-32083945"	NA	inner
CUST_25835_PI429285431	1.3992847	A	0.9183157	A	1.39568077402196	0	lncRNA	27356-1_{1..905}	lnc-ANKRD42-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD42-1:1	chr11	 82895124	 82896028	+	lnc-ANKRD42-1	lnc-ANKRD42-1:1	ENSG00000254676.1	RP11-727A23.4	ANKRD42	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50chr11:82905291-82905562"	NA	inner
CUST_11008_PI429285431	1.4970139	A	1.0297424	A	1.38249235253806	0	lncRNA	12553-1_{1..645}	lnc-FOXN4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXN4-1:2	chr12	109797066	109797710	-	lnc-FOXN4-1	lnc-FOXN4-1:2	XLOC_010195	linc-FOXN4	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40"	NA	inter
CUST_32830_PI429285431	4.3960724	P	4.688815	P	0.816348682893953	0	lncRNA	34464-1_{1..381}	n339480|AJ001020|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1920|NULL|-1.0305500|-0.1041051	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339480|AJ001020|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1920|NULL|-1.0305500|-0.1041051	chr21	 37544364	 37544744	-	NA	NA	NA	NA	DOPEY2	NA	chr21:37536839-37554743	inner
CUST_7405_PI429285431	0.8884805	A	0.8909783	A	0.998270154882147	0	lncRNA	9049-1_{1..3000}	lnc-IQCG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IQCG-1:1	chr3	197607105	197610104	-	lnc-IQCG-1	lnc-IQCG-1:1	ENSG00000246832	ENST00000501503	IQCG	NA	chr3:197615946-197619382	inter
CUST_30952_PI429285431	8.158818	P	7.4724054	P	1.60927691724906	0	lncRNA	32740-1_{1..404}	n337068|DQ185042|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342124|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342124|2.7313400|-0.3994652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337068|DQ185042|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342124|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342124|2.7313400|-0.3994652	chr11	 32605443	 32605846	+	NA	NA	NA	NA	EIF3M	NA	chr11:32605391-32620660	inner
LNCA_21_P0006360	0.9018585	A	1.293265	A	0.762385983187041	0	lncRNA	TCONS_00016657	NA	NA	NA	NA	XLOC_007476	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007476), lincRNA [TCONS_00016657]"	chr9:98577592-98577651	hs|9q22.32	Agilent_HUMAN_G3V2	TCONS_00016657	TCONS_00016657	chr9	 98577592	 98577651	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007898	1.2178977	A	1.743701	A	0.694572260833297	0	lncRNA	TCONS_00021432	NA	NA	NA	NA	XLOC_010243	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010243), lincRNA [TCONS_00021432]"	chr12:127115733-127115674	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00021432	TCONS_00021432	chr12	127115674	127115733	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11810_PI429285431	0.9053722	A	1.0994682	A	0.874120452638878	0	lncRNA	13391-1_{1..385}	lnc-HOXC13-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOXC13-2:2	chr12	 54124825	 54125209	+	lnc-HOXC13-2	lnc-HOXC13-2:2	XLOC_009763	linc-HOXC13-2	CALCOCO1	NA	chr12:54114825-54121307	inter
CUST_26319_PI429285431	0.88648397	A	0.8931299	A	0.995403986501354	0	lncRNA	27826-1_{1..1156}	lnc-FZD4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FZD4-1:2	chr11	 86632278	 86633433	-	lnc-FZD4-1	lnc-FZD4-1:2	ENSG00000255471.1	RP11-736K20.5	NA	NA	NA	inter
CUST_31346_PI429285431	4.240665	P	4.8056993	P	0.675939345900027	0	lncRNA	33128-1_{1..1947}	n337814|BC035094|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|197|NULL|-0.9008070|-0.2989515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337814|BC035094|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|197|NULL|-0.9008070|-0.2989515	chr15	 60771379	 60773325	+	NA	NA	NA	NA	RORA	NA	chr15:60780483-60833166	inner
CUST_18306_PI429285431	4.4987507	P	5.7738633	P	0.413192908784509	0	lncRNA	20035-2_{3001..3279}	lnc-TUBGCP2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUBGCP2-1:3	chr10	135093276	135093554	-	lnc-TUBGCP2-1	lnc-TUBGCP2-1:3	ENSG00000151651	ADAM8	ADAM8	NA	chr10:135080276-135090407	inner
CUST_1817_PI429285431	1.1679142	A	1.1178535	A	1.03530848252918	0	lncRNA	1804-1_{1..791}	"transcript_id ""ENST00000510169.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510169.1"" | genecode_v17"	chr4	 84589663	 84590453	-	ENSG00000249171.1	ENST00000510169.1	RP11-767N15.1	RP11-767N15.1-001	NA	NA	NA	inter
CUST_46330_PI429285431	0.9051886	A	1.1603347	A	0.837902277010614	0	lncRNA	50558-1_{1..3000}	"gi|304766544|ref|NR_015358.2| Homo sapiens long intergenic non-protein coding RNA 643 (LINC00643), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|304766544|ref|NR_015358.2| Homo sapiens long intergenic non-protein coding RNA 643 (LINC00643), non-coding RNA"	Chr14	 62584075	 62587074	+	646113	NR_015358.2	NA	NA	NA	NA	NA	inter
CUST_42940_PI429285431	6.7250123	P	7.058552	P	0.793587001217539	0	lncRNA	46059-1_{1..92}	ENST00000516087 ncrna:snoRNA chromosome:GRCh37:15:25346722:25346813:1 gene:ENSG00000251896 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516087 ncrna:snoRNA chromosome:GRCh37:15:25346722:25346813:1 gene:ENSG00000251896 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 25346722	 25346813	+	ENSG00000251896	ENST00000516087	NA	NA	SNRPN	NA	chr15:25336722-25356813	inter
CUST_25302_PI429285431	10.330359	P	10.520893	P	0.876281313995139	0	lncRNA	26832-1_{1..439}	lnc-C11orf46-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf46-2:2	chr11	 30606140	 30606578	+	lnc-C11orf46-2	lnc-C11orf46-2:2	ENSG00000254489.1	RP5-1024C24.1	MPPED2	NA	chr11:30596140-30607930	inner
CUST_30696_PI429285431	2.2296672	A	2.1770616	A	1.03713636832064	0	lncRNA	32478-1_{1..351}	n336193|X93697|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324647|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324647|2.0933900|-0.0646530	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336193|X93697|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324647|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324647|2.0933900|-0.0646530	chr2	 89160078	 89160428	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25605_PI429285431	3.7045028	P	3.71411	P	0.993362919767944	0	lncRNA	27134-1_{1..808}	lnc-GSTM5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GSTM5-1:2	chr1	110317694	110318501	+	lnc-GSTM5-1	lnc-GSTM5-1:2	ENSG00000241720.1	RP4-735C1.4	NA	"hg19_refFlat_GSTM3:range=chr1:110279693-1102829095'pad=0,hg19_refFlat_GSTM3:range=chr1:110279693-1102829095'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60"	NA	inter
CUST_41555_PI429285431	1.9008529	A	1.5386233	A	1.28541088995533	0	lncRNA	42852-1_{1..100}	ENST00000579846 ncrna:miRNA chromosome:GRCh37:X:20035206:20035305:-1 gene:ENSG00000264566 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579846 ncrna:miRNA chromosome:GRCh37:X:20035206:20035305:-1 gene:ENSG00000264566 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 20035206	 20035305	-	ENSG00000264566	ENST00000579846	NA	NA	MAP7D2	NA	chrX:20025206-20045305	inner
CUST_36567_PI429285431	0.8880215	A	0.8872759	A	1.0005169441074	0	lncRNA	37763-1_{1..620}	n345065|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_614|NULL|-1.6419400|-0.3414293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345065|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_614|NULL|-1.6419400|-0.3414293	chrX	 42797221	 42797840	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5452_PI429285431	1.2357004	A	0.92512774	A	1.24019988429476	0	lncRNA	5386-1_{1..2028}	"transcript_id ""ENST00000444326.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444326.1"" | genecode_v17"	chr16	 21314568	 21316595	+	ENSG00000189149.7	ENST00000444326.1	CRYM-AS1	CRYM-AS1-002	CRYM	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-62.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50chr16:21304568-21314404"	NA	inter
CUST_2628_PI429285431	0.89942944	A	0.9042776	A	0.996645151686734	0	lncRNA	2615-1_{1..2069}	"transcript_id ""ENST00000431422.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000431422.1"" | genecode_v17"	chr6	134758854	134760922	+	ENSG00000236700.1	ENST00000431422.1	RP11-557H15.2	RP11-557H15.2-001	NA	"hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20"	NA	inter
CUST_26587_PI429285431	9.628735	P	9.698433	P	0.952837435056746	0	lncRNA	28090-1_{1..469}	lnc-HTR3D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-HTR3D-1:1	chr3	183729054	183729522	+	lnc-HTR3D-1	lnc-HTR3D-1:1	ENSG00000223882.1	ABCC5-AS1	ABCC5	NA	chr3:183719054-183735727	inner
CUST_20387_PI429285431	5.1184773	P	5.4705772	P	0.783442935248979	0	lncRNA	22029-1_{1..599}	lnc-EXD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EXD2-1:1	chr14	 69454062	 69454660	+	lnc-EXD2-1	lnc-EXD2-1:1	ENSG00000259062.1	ACTN1-AS1	ACTN1	NA	chr14:69444062-69446083	inter
CUST_1580_PI429285431	0.88505155	A	0.885817	A	0.999469571217753	0	lncRNA	1568-2_{3001..6000}	"transcript_id ""ENST00000482787.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000482787.3"" | genecode_v17"	chr3	181673131	181676130	+	ENSG00000242512.3	ENST00000482787.3	RP11-416O18.1	RP11-416O18.1-001	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20"	NA	inter
CUST_12989_PI429285431	3.1063406	P	3.2634878	P	0.896796653696854	0	lncRNA	14616-1_{1..411}	lnc-C15orf2-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-8:1	chr15	 24544777	 24545187	+	lnc-C15orf2-8	lnc-C15orf2-8:1	XLOC_011175	linc-C15orf2-7	NA	NA	NA	inter
CUST_7132_PI429285431	1.9524764	A	1.0165536	A	1.91311394087663	0	lncRNA	7069-1_{1..3000}	"transcript_id ""ENST00000450591.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450591.1"" | genecode_v17"	chrY	  6274285	  6277284	-	ENSG00000212856.5	ENST00000450591.1	TTTY2B	TTTY2B-001	NA	NA	NA	inter
CUST_19771_PI429285431	0.8925121	A	0.8979813	A	0.99621621605944	0	lncRNA	21429-1_{1..704}	lnc-TBC1D29-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBC1D29-1:3	chr17	 28999481	 29000184	+	lnc-TBC1D29-1	lnc-TBC1D29-1:3	ENSG00000214719.5	LRRC37BP1	NA	NA	NA	inter
CUST_14623_PI429285431	3.9423292	P	4.0136533	P	0.951764071631223	0	lncRNA	16294-1_{1..410}	lnc-RNF38-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF38-2:1	chr9	 36315025	 36315434	-	lnc-RNF38-2	lnc-RNF38-2:1	XLOC_007680	linc-GNE	NA	NA	NA	inter
CUST_37902_PI429285431	0.89118063	A	0.88918984	A	1.00138086299013	0	lncRNA	38991-1_{1..2652}	n346440|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1990|NULL|-1.3478300|-0.2661800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346440|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1990|NULL|-1.3478300|-0.2661800	chr20	 52522413	 52525064	+	NA	NA	NA	NA	BCAS1	NA	chr20:52560079-52565874	inter
CUST_4685_PI429285431	1.4847126	A	1.3057506	A	1.13206908347922	0	lncRNA	4632-1_{1..1765}	"transcript_id ""ENST00000454555.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000454555.2"" | genecode_v17"	chr13	106358994	106360758	+	ENSG00000226620.2	ENST00000454555.2	LINC00343	LINC00343-001	NA	NA	NA	inter
CUST_21137_PI429285431	4.2250166	P	5.085026	P	0.550948968172606	0	lncRNA	22762-1_{1..524}	lnc-RBM42-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBM42-1:3	chr19	 36113503	 36114026	+	lnc-RBM42-1	lnc-RBM42-1:3	ENSG00000089336.6	AC002115.6	RBM42	NA	chr19:36119980-36123642	inner
CUST_46357_PI429285431	4.036249	P	2.8272743	A	2.31173287276472	0	lncRNA	50580-2_{3001..6000}	"gi|387765979|ref|NR_048573.1| Homo sapiens general transcription factor IIA, 1, 19/37kDa (GTF2A1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|387765979|ref|NR_048573.1| Homo sapiens general transcription factor IIA, 1, 19/37kDa (GTF2A1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_048573.1	NA	NA	NA	NA	NA	Unknown
CUST_45988_PI429285431	0.8820443	A	0.8816609	A	1.00026578794439	0	lncRNA	50277-2_{3001..5255}	"gi|393250347|ref|NR_036693.2| Homo sapiens C-type lectin domain family 2, member D (CLEC2D), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|393250347|ref|NR_036693.2| Homo sapiens C-type lectin domain family 2, member D (CLEC2D), transcript variant 6, non-coding RNA"	Chr12	  9825304	  9827558	+	29121	NR_036693.2	NA	NA	NA	NA	NA	inter
CUST_40521_PI429285431	1.9344653	A	1.8925277	A	1.0294955543339	0	lncRNA	41284-1_{1..3000}	n409565|NR_033948|lncRNA|Homosapiens||RefGeneNoncode|NR_033948||5.7493000|-0.1809634	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409565|NR_033948|lncRNA|Homosapiens||RefGeneNoncode|NR_033948||5.7493000|-0.1809634	chr12	121570630	121573629	+	NA	NA	NA	NA	P2RX7	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50chr12:121570622-121624354"	NA	inter
CUST_45872_PI429285431	11.003242	P	11.07036	P	0.954542937574749	0	lncRNA	50198-1_{1..949}	"gi|218505725|ref|NR_024598.1| Homo sapiens chromosome 11 open reading frame 73 (C11orf73), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|218505725|ref|NR_024598.1| Homo sapiens chromosome 11 open reading frame 73 (C11orf73), transcript variant 4, non-coding RNA"	Chr11	 86013253	 86014201	+	51501	NR_024598.1	NA	NA	NA	NA	NA	inter
CUST_40963_PI429285431	0.9102716	A	0.91412336	A	0.997333724259837	0	lncRNA	41637-2_{3001..5647}	n410989|NR_038451|lncRNA|Homosapiens||RefGeneNoncode|NR_038451||0.2533060|-0.3815304	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410989|NR_038451|lncRNA|Homosapiens||RefGeneNoncode|NR_038451||0.2533060|-0.3815304	chr1	202521231	202523877	+	NA	NA	NA	NA	PPP1R12B	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr1:202508231-202533878"	NA	inner
CUST_17480_PI429285431	4.5094433	P	4.6363993	P	0.915761615325826	0	lncRNA	19207-1_{1..353}	lnc-NUFIP1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUFIP1-1:5	chr13	 45461008	 45461360	-	lnc-NUFIP1-1	lnc-NUFIP1-1:5	XLOC_010590	linc-TSC22D1-1	NA	NA	NA	inter
CUST_36598_PI429285431	1.6918954	A	1.513004	A	1.13201368568588	0	lncRNA	37792-1_{1..2604}	n345095|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_644|NULL|-1.3262100|-0.1939682	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345095|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_644|NULL|-1.3262100|-0.1939682	chrX	106902186	106904789	+	NA	NA	NA	NA	PRPS1	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.70chrX:106892186-106894256"	NA	inter
CUST_14997_PI429285431	6.796132	P	7.0292387	P	0.850800802969613	0	lncRNA	16659-1_{1..1424}	lnc-FAM22E-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-FAM22E-2:1	chr10	 81682418	 81683841	+	lnc-FAM22E-2	lnc-FAM22E-2:1	XLOC_008531	linc-C10orf57-2	NA	NA	NA	inter
CUST_46608_PI429285431	1.7016126	A	0.9565615	A	1.67603363309572	0	lncRNA	50787-1_{1..1003}	"gi|397139613|ref|XR_158891.1| PREDICTED: Homo sapiens uncharacterized LOC100996277 (LOC100996277), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139613|ref|XR_158891.1| PREDICTED: Homo sapiens uncharacterized LOC100996277 (LOC100996277), misc_RNA"	NA	NA	NA	NA	NA	XR_158891.1	NA	NA	NA	NA	NA	Unknown
CUST_1228_PI429285431	0.9079097	A	1.0637556	A	0.897605922408464	0	lncRNA	1220-1_{1..596}	"transcript_id ""ENST00000437261.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437261.1"" | genecode_v17"	chr2	213775727	213776322	+	ENSG00000223373.1	ENST00000437261.1	AC108066.1	AC108066.1-001	NA	NA	NA	inter
CUST_32540_PI429285431	1.531095	A	1.0310183	A	1.41428875017134	0	lncRNA	34206-1_{1..2100}	n339153|BC043385|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1583|NULL|-1.0462500|-0.2652047	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339153|BC043385|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1583|NULL|-1.0462500|-0.2652047	chr2	221315399	221317498	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46624_PI429285431	8.042591	P	8.071945	P	0.979858953830761	0	lncRNA	50801-1_{1..2218}	"gi|312922386|ref|NR_037608.1| Homo sapiens SLX1A-SULT1A3 readthrough (non-protein coding) (SLX1A-SULT1A3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|312922386|ref|NR_037608.1| Homo sapiens SLX1A-SULT1A3 readthrough (non-protein coding) (SLX1A-SULT1A3), non-coding RNA"	Chr16	 30205754	 30207971	+	100526830	NR_037608.1	NA	NA	NA	NA	NA	inter
CUST_10402_PI429285431	5.877224	P	5.8559017	P	1.01488924887153	0	lncRNA	11929-1_{1..3000}	lnc-COL4A1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL4A1-2:1	chr13	110709473	110712472	-	lnc-COL4A1-2	lnc-COL4A1-2:1	XLOC_010719	linc-IRS2-2	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80"	NA	inter
CUST_41995_PI429285431	1.4836613	A	1.3137656	A	1.12497715124339	0	lncRNA	43828-1_{1..87}	ENST00000362127 ncrna:miRNA chromosome:GRCh37:10:91352500:91352586:-1 gene:ENSG00000198997 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362127 ncrna:miRNA chromosome:GRCh37:10:91352500:91352586:-1 gene:ENSG00000198997 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 91352500	 91352586	-	ENSG00000198997	ENST00000362127	NA	NA	PANK1	NA	chr10:91342500-91362586	inner
CUST_29987_PI429285431	1.5273099	A	1.2199079	A	1.23747724770466	0	lncRNA	31753-1_{1..200}	n334289|S69690|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216343_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216343_03|-1.0479500|-0.1979512	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334289|S69690|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216343_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216343_03|-1.0479500|-0.1979512	chr10	 81370700	 81370899	+	NA	NA	NA	NA	SFTPA1	NA	chr10:81360700-81375199	inner
CUST_34623_PI429285431	6.4212027	P	6.4334183	P	0.991568537152386	0	lncRNA	36077-1_{1..1202}	n341513|AL137390|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3983|NULL|-0.9322950|-0.4447341	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341513|AL137390|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3983|NULL|-0.9322950|-0.4447341	chr8	 62791440	 62792641	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35652_PI429285431	0.891294	A	0.9157054	A	0.983221657820859	0	lncRNA	37069-1_{1..2198}	n342801|AK124929|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5304|NULL|-1.1749300|-0.2639406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342801|AK124929|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5304|NULL|-1.1749300|-0.2639406	chr7	 34897871	 34900068	+	NA	NA	NA	NA	NPSR1	NA	chr7:34887871-34910069	inner
CUST_11075_PI429285431	2.3965003	A	2.3231876	A	1.05212980059917	0	lncRNA	12627-1_{1..423}	lnc-PDE8B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE8B-1:1	chr5	 77178303	 77178725	+	lnc-PDE8B-1	lnc-PDE8B-1:1	XLOC_004439	linc-SCAMP1-2	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90"	NA	inter
CUST_11096_PI429285431	16.727428	P	16.753788	P	0.981894549613255	0	lncRNA	12650-1_{1..704}	lnc-SLC16A1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SLC16A1-1:3	chr1	113392302	113393005	-	lnc-SLC16A1-1	lnc-SLC16A1-1:3	XLOC_000966	linc-PPM1J	NA	NA	NA	inter
CUST_4013_PI429285431	7.60034	P	7.6607676	P	0.958979845417726	0	lncRNA	3974-1_{1..495}	"transcript_id ""ENST00000530792.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530792.1"" | genecode_v17"	chr11	 74919099	 74919593	-	ENSG00000255136.2	ENST00000530792.1	CTD-2562J17.4	CTD-2562J17.4-001	SLCO2B1	"hg19_refFlat_TPBGL:range=chr11:74952095-749532435'pad=0,hg19_refFlat_TPBGL:range=chr11:74952095-749532435'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.50chr11:74909099-74917445"	NA	inner
CUST_50181_PI429285431	4.311693	P	4.8196597	P	0.703212831187945	0	lncRNA	53907-1_{1..994}	hg19_lincRNAsTranscripts_TCONS_l2_00029251 range=chr9:34889060-34895782 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029251 range=chr9:34889060-34895782 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 34889060	 34890053	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43332_PI429285431	2.8135755	A	1.9128684	A	1.86698081166209	0	lncRNA	48160-1_{1..3000}	ENST00000413102 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:30011976:30018560:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>ENST00000413102 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:30011976:30018560:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	chrHSCHR6_MHC_QBL	 30011976	 30014975	-	ENSG00000235814	ENST00000413102	NA	NA	NA	NA	NA	Unknown
CUST_32541_PI429285431	0.8917648	A	0.8883683	A	1.00235704787883	0	lncRNA	34207-1_{1..356}	n339154|BC039534|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1584|NULL|-1.1925200|-0.2966403	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339154|BC039534|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1584|NULL|-1.1925200|-0.2966403	chr2	222686210	222686565	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49790_PI429285431	2.3345146	A	2.6602888	A	0.797870106788649	0	lncRNA	53547-1_{1..266}	hg19_lincRNAsTranscripts_TCONS_l2_00026607 range=chr7:62697656-62702194 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026607 range=chr7:62697656-62702194 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 62697656	 62697921	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1141_PI429285431	9.394598	P	9.190841	P	1.15169364076392	0	lncRNA	1130-1_{1..383}	"transcript_id ""ENST00000413043.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413043.1"" | genecode_v17"	chr2	154028501	154028883	-	ENSG00000224612.1	ENST00000413043.1	AC011901.2	AC011901.2-001	NA	NA	NA	inter
CUST_37606_PI429285431	4.108547	P	3.723804	P	1.30562718347879	0	lncRNA	38704-1_{1..2074}	n346083|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1633|NULL|-1.6274900|-0.2216561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n346083|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1633|NULL|-1.6274900|-0.2216561	chr15	 93324914	 93326987	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00"	NA	inter
LNCA_21_P0014631	4.053454	P	3.7569041	P	1.22820373885181	0	lncRNA	XR_110832	XR_110832	XR_110832	NA	NA	LOC100505971	uncharacterized LOC100505971	NA	THC2532458	NA	"PREDICTED: Homo sapiens hypothetical LOC100505971 (LOC100505971), miscRNA [XR_110832]"	chr1:145018864-145018923	hs|1q21.1	Agilent_HUMAN_G3V2	XR_110832	XR_110832	chr1	145018864	145018923	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17358_PI429285431	5.7291102	P	6.2753286	P	0.684812812881699	0	lncRNA	19078-1_{1..806}	lnc-SLC25A48-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A48-2:8	chr5	135160587	135161392	+	lnc-SLC25A48-2	lnc-SLC25A48-2:8	XLOC_004565	linc-SLC25A48-1	SLC25A48	NA	chr5:135170365-135170793	inter
CUST_51837_PI429285431	0.92007136	A	0.9022824	A	1.01240669986291	0	lncRNA	55392-1_{1..912}	hg19_lincRNAsTranscripts_TCONS_l2_00012521 range=chr19:37742834-37747461 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012521 range=chr19:37742834-37747461 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 37742834	 37743745	+	NA	NA	NA	NA	ZNF383	NA	chr19:37732834-37734574	inter
CUST_7224_PI429285431	10.642862	P	10.621302	P	1.0150564769011	0	lncRNA	7721-1_{1..89}	"transcript_id ""ENST00000365645.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000365645.1"" | genecode_v17"	chr5	140105743	140105831	+	ENSG00000202515.1	ENST00000365645.1	VTRNA1-3	VTRNA1-3-201	NA	NA	NA	inter
CUST_16726_PI429285431	1.9199123	A	1.1849939	A	1.66430333241638	0	lncRNA	18433-1_{1..1058}	lnc-RGS9-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGS9-1:9	chr17	 63115270	 63116327	+	lnc-RGS9-1	lnc-RGS9-1:9	XLOC_012281	linc-RGS9-1	NA	NA	NA	inter
CUST_22800_PI429285431	1.7504032	A	2.1638153	A	0.750845456869287	0	lncRNA	24380-1_{1..307}	lnc-C17orf97-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf97-4:2	chr17	   172053	   172359	+	lnc-C17orf97-4	lnc-C17orf97-4:2	ENSG00000262920.1	RP11-1260E13.1	RPH3AL	NA	chr17:162053-182244	inner
LNCA_21_P0006175	2.3586097	A	2.474696	A	0.922687297139051	0	lncRNA	TCONS_00016057	NA	NA	NA	NA	XLOC_007447	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007447), lincRNA [TCONS_00016057]"	chr9:92142842-92168406	hs|9q22.2	Agilent_HUMAN_G3V2	TCONS_00016057	TCONS_00016057	chr9	 92142842	 92168406	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11954_PI429285431	0.95947397	A	0.925064	A	1.02413788788394	0	lncRNA	13534-1_{1..245}	lnc-FTMT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FTMT-1:1	chr5	121176344	121176588	+	lnc-FTMT-1	lnc-FTMT-1:1	XLOC_004530	linc-FTMT-1	NA	NA	NA	inter
CUST_8161_PI429285431	0.90516496	A	0.9170035	A	0.991827725466385	0	lncRNA	9764-1_{1..790}	lnc-MARCKS-5:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MARCKS-5:12	chr6	114464783	114465572	+	lnc-MARCKS-5	lnc-MARCKS-5:12	ENSG00000228624	RP3-399L15.3	NA	NA	NA	inter
CUST_15535_PI429285431	10.414212	P	11.759014	P	0.393708018302256	0	lncRNA	17220-1_{1..633}	lnc-ZNF804A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF804A-1:3	chr2	186084780	186085412	+	lnc-ZNF804A-1	lnc-ZNF804A-1:3	XLOC_001780	linc-FSIP2	NA	NA	NA	inter
CUST_11699_PI429285431	1.3185023	A	1.4694396	A	0.900665122199181	0	lncRNA	13277-1_{1..545}	lnc-RGS7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGS7-1:2	chr1	240906811	240907355	-	lnc-RGS7-1	lnc-RGS7-1:2	XLOC_001278	linc-GREM2-2	NA	NA	NA	inter
CUST_41175_PI429285431	2.9311874	P	2.2380161	A	1.61683370276198	0	lncRNA	42008-1_{1..133}	ENST00000408455 ncrna:miRNA chromosome:GRCh37:3:70927811:70927943:-1 gene:ENSG00000221382 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408455 ncrna:miRNA chromosome:GRCh37:3:70927811:70927943:-1 gene:ENSG00000221382 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 70927811	 70927943	-	ENSG00000221382	ENST00000408455	NA	NA	NA	NA	NA	inter
CUST_11715_PI429285431	5.5713024	P	5.4869294	P	1.06022686315126	0	lncRNA	13293-1_{1..932}	lnc-SLC25A26-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A26-1:2	chr3	 66027252	 66028183	+	lnc-SLC25A26-1	lnc-SLC25A26-1:2	XLOC_002690	linc-SLC25A26-1	MAGI1	NA	chr3:66017252-66024509	inter
LNCA_21_P0001656	4.5630813	P	4.70443	P	0.906671159645779	0	lncRNA	TCONS_00001909	NA	NA	NA	NA	XLOC_000008	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000008), lincRNA [TCONS_00001909]"	chr1:757052-757111	hs|1p36.33	Agilent_HUMAN_G3V2	TCONS_00001909	TCONS_00001909	chr1	   757052	   757111	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25910_PI429285431	1.3030721	A	1.5529217	A	0.840984082716171	0	lncRNA	27429-1_{1..1991}	lnc-STRN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-STRN3-1:1	chr14	 31358590	 31360580	-	lnc-STRN3-1	lnc-STRN3-1:1	ENSG00000258525.1	RP11-829H16.3	STRN3	"hg19_refFlat_COCH:range=chr14:31344145-313589975'pad=0,hg19_refFlat_COCH:range=chr14:31344145-313589975'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr14:31363005-31369014"	NA	inter
CUST_3448_PI429285431	1.694222	A	1.0233347	A	1.59205182529321	0	lncRNA	3419-1_{1..711}	"transcript_id ""ENST00000590250.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590250.1"" | genecode_v17"	chr9	 84888374	 84889084	+	ENSG00000228430.4	ENST00000590250.1	RP11-15B24.5	RP11-15B24.5-004	NA	NA	NA	inter
CUST_8891_PI429285431	7.4149213	P	7.489573	P	0.949571341796615	0	lncRNA	10428-1_{1..3000}	lnc-RDH10-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RDH10-3:1	chr8	 74362201	 74365200	+	lnc-RDH10-3	lnc-RDH10-3:1	ENSG00000251683	ENST00000510691	STAU2	NA	chr8:74352201-74375458	inner
CUST_24562_PI429285431	2.7033155	A	3.3423905	P	0.642124522116856	0	lncRNA	26110-1_{1..473}	lnc-UCK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UCK1-1:1	chr9	134397555	134398027	-	lnc-UCK1-1	lnc-UCK1-1:1	ENSG00000230289.1	RP11-334J6.6	POMT1	"hg19_refFlat_POMT1:range=chr9:134381541-1343984935'pad=0,hg19_refFlat_POMT1:range=chr9:134381541-1343984935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_POMT1:range=chr9:134379606-1343984935'pad=0,hg19_refFlat_POMT1:range=chr9:134379606-1343984935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_POMT1:range=chr9:134382826-1343984935'pad=0,hg19_refFlat_POMT1:range=chr9:134382826-1343984935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70chr9:134387555-134399193"	NA	inner
CUST_48631_PI429285431	1.0925206	A	0.9270533	A	1.12152929114949	0	lncRNA	52478-1_{1..1011}	hg19_lincRNAsTranscripts_TCONS_l2_00013762 range=chr2:89084246-89104129 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013762 range=chr2:89084246-89104129 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 89084246	 89085256	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48775_PI429285431	0.9931532	A	1.3829627	A	0.763230378229424	0	lncRNA	52613-1_{1..731}	hg19_lincRNAsTranscripts_TCONS_l2_00015067 range=chr2:200758875-200775896 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015067 range=chr2:200758875-200775896 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	200758875	200759605	-	NA	NA	NA	NA	C2orf69	NA	chr2:200775979-200785896	inter
CUST_13764_PI429285431	3.8465726	P	4.5855894	P	0.599147533632368	0	lncRNA	15407-1_{1..798}	lnc-C10orf122-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf122-1:6	chr10	127400043	127400840	-	lnc-C10orf122-1	lnc-C10orf122-1:6	XLOC_008982	linc-C10orf122-2	C10orf137	NA	chr10:127408084-127410192	inter
LNCA_21_P0006814	5.413306	P	5.814542	P	0.757209281441804	0	lncRNA	TCONS_00018087	NA	NA	NA	NA	XLOC_008351	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008351), lincRNA [TCONS_00018087]"	chr10:3730992-3731051	hs|10p15.2	Agilent_HUMAN_G3V2	TCONS_00018087	TCONS_00018087	chr10	  3730992	  3731051	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43966_PI429285431	1.7813907	A	1.5670036	A	1.16021091737511	0	lncRNA	48671-1_{1..844}	"gi|397138976|ref|XR_132701.2| PREDICTED: Homo sapiens fatty acyl-CoA reductase 2-like (LOC100288897), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138976|ref|XR_132701.2| PREDICTED: Homo sapiens fatty acyl-CoA reductase 2-like (LOC100288897), misc_RNA"	Chr2	131451383	131452226	+	100288897	XR_132701.3	NA	NA	NA	NA	NA	inter
CUST_29922_PI429285431	6.698098	P	7.1035523	P	0.754998508757338	0	lncRNA	31686-1_{1..249}	n334070|M32074|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195453|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195453|-1.1518200|-0.0110249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334070|M32074|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195453|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195453|-1.1518200|-0.0110249	chr12	 53609541	 53609789	-	NA	NA	NA	NA	RARG	NA	chr12:53604353-53623946	inner
CUST_30177_PI429285431	8.703844	P	7.4652386	P	2.35970318211218	0	lncRNA	31951-1_{1..570}	n334875|AJ420452|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247740|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247740|-1.4145000|-0.2895988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334875|AJ420452|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247740|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247740|-1.4145000|-0.2895988	chr6	158365006	158365575	+	NA	NA	NA	NA	SNX9	NA	chr6:158355006-158366109	inner
LNCA_19_P00320814	3.0019236	P	2.8888164	A	1.08155512586009	0	lncRNA	ENST00000430635	NA	NA	NA	NA	XLOC_l2_009205	NA	ENST00000430635	THC2737641	NA	"BROAD Institute lincRNA (XLOC_l2_009205), lincRNA [TCONS_l2_00017209]"	chr21:36105266-36105207	hs|21q22.12	Agilent_HUMAN_G3V2	ENST00000430635	ENST00000430635	chr21	 36105207	 36105266	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007041	3.5926523	P	4.466701	P	0.545613520340555	0	lncRNA	THC2695834	NA	NA	NA	NA	XLOC_008338	NA	NA	THC2695834	NA	"BROAD Institute lincRNA (XLOC_008338), lincRNA [TCONS_00018662]"	chr10:001206525-001206584	hs|10p15.3	Agilent_HUMAN_G3V2	THC2695834	THC2695834	chr10	  1206525	  1206584	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45777_PI429285431	9.097309	P	9.406095	P	0.807320818343428	0	lncRNA	50121-2_{3001..3753}	"gi|350606397|ref|NR_015384.2| Homo sapiens uncharacterized LOC100126784 (LOC100126784), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|350606397|ref|NR_015384.2| Homo sapiens uncharacterized LOC100126784 (LOC100126784), non-coding RNA"	Chr11	 19735480	 19736232	-	100126784	NR_015384.2	NA	NA	NA	"hg19_refFlat_NAV2:range=chr11:19735242-201398045'pad=0,hg19_refFlat_NAV2:range=chr11:19735242-201398045'pad=0 3'pad=0 strand=+ repeatMasking=none,-110.10"	NA	inter
LNCA_21_P0006715	5.066865	P	5.482217	P	0.749836521353319	0	lncRNA	ENST00000449693	NA	NA	NA	NA	XLOC_008661	NA	ENST00000449693	NA	NA	"BROAD Institute lincRNA (XLOC_008661), lincRNA [TCONS_00017888]"	chr10:127389115-127389174	hs|10q26.13	Agilent_HUMAN_G3V2	ENST00000449693	ENST00000449693	chr10	127389115	127389174	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41279_PI429285431	0.8996265	A	0.88872474	A	1.0075851467865	0	lncRNA	42260-1_{1..92}	ENST00000577344 ncrna:miRNA chromosome:GRCh37:11:87909670:87909761:1 gene:ENSG00000266581 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577344 ncrna:miRNA chromosome:GRCh37:11:87909670:87909761:1 gene:ENSG00000266581 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 87909670	 87909761	+	ENSG00000266581	ENST00000577344	NA	NA	RAB38	NA	chr11:87899670-87908635	inter
CUST_42842_PI429285431	0.89656866	A	0.8921602	A	1.00306038506538	0	lncRNA	45883-1_{1..73}	ENST00000516757 ncrna:snoRNA chromosome:GRCh37:4:108038489:108038561:-1 gene:ENSG00000252566 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516757 ncrna:snoRNA chromosome:GRCh37:4:108038489:108038561:-1 gene:ENSG00000252566 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	108038489	108038561	-	ENSG00000252566	ENST00000516757	NA	NA	NA	NA	NA	inter
CUST_4076_PI429285431	1.3974187	A	1.5472251	A	0.901371412494418	0	lncRNA	4037-1_{1..520}	"transcript_id ""ENST00000529238.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000529238.1"" | genecode_v17"	chr11	112352955	112353474	+	ENSG00000254968.2	ENST00000529238.1	RP11-65M17.3	RP11-65M17.3-002	NA	NA	NA	inter
CUST_47367_PI429285431	8.102923	P	7.8564634	P	1.18629235690371	0	lncRNA	51417-1_{1..3000}	"gi|336455061|ref|NR_038879.1| Homo sapiens GCFC1 antisense RNA 1 (GCFC1-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336455061|ref|NR_038879.1| Homo sapiens GCFC1 antisense RNA 1 (GCFC1-AS1), transcript variant 1, non-coding RNA"	Chr21	 34100425	 34103424	+	100506215	NR_038879.1	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_GCFC1:range=chr21:34107261-341439795'pad=0,hg19_refFlat_GCFC1:range=chr21:34107261-341439795'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20"	NA	inter
CUST_49559_PI429285431	3.7868104	P	4.1581993	P	0.773037925445448	0	lncRNA	53349-1_{1..1282}	hg19_lincRNAsTranscripts_TCONS_l2_00024864 range=chr6:107219431-107235385 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024864 range=chr6:107219431-107235385 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	107219431	107220712	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14535_PI429285431	0.8915446	A	0.9525713	A	0.958581697828842	0	lncRNA	16203-1_{1..355}	lnc-CCT5-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCT5-3:2	chr5	  9857504	  9857858	+	lnc-CCT5-3	lnc-CCT5-3:2	XLOC_004290	linc-CCT5-2	NA	NA	NA	inter
CUST_16008_PI429285431	0.91201365	A	1.4770262	A	0.67594953640542	0	lncRNA	17704-2_{3001..4010}	lnc-CTR9-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTR9-3:8	chr11	 10931002	 10932011	+	lnc-CTR9-3	lnc-CTR9-3:8	XLOC_009065	linc-USP47-3	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60"	NA	inter
LNCA_21_P0002297	0.90040094	A	0.8996025	A	1.00055358960905	0	lncRNA	TCONS_00003887	NA	NA	NA	NA	XLOC_001690	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001690), lincRNA [TCONS_00003887]"	chr2:140021474-140021533	hs|2q22.1	Agilent_HUMAN_G3V2	TCONS_00003887	TCONS_00003887	chr2	140021474	140021533	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31795_PI429285431	0.90838856	A	1.7069018	A	0.57494137440129	0	lncRNA	33533-1_{1..343}	n338335|X64993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|729|NULL|2.1688200|-0.2194434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338335|X64993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|729|NULL|2.1688200|-0.2194434	chr19	 14991450	 14991792	-	NA	NA	NA	NA	OR7A17	NA	chr19:14991238-14992167	inner
CUST_22315_PI429285431	6.966335	P	7.2495937	P	0.821732823273819	0	lncRNA	23914-1_{1..687}	lnc-KIAA1324L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1324L-1:2	chr7	 86415745	 86416431	-	lnc-KIAA1324L-1	lnc-KIAA1324L-1:2	ENSG00000233073.1	AC005009.2	GRM3	"hg19_refFlat_GRM3:range=chr7:86394462-864936715'pad=0,hg19_refFlat_GRM3:range=chr7:86394462-864936715'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.40chr7:86405745-86425908"	NA	inner
CUST_16504_PI429285431	0.89762783	A	1.9271585	A	0.489869484651798	0	lncRNA	18202-1_{1..331}	lnc-RP11-487E13.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-487E13.1.1-1:1	chr4	178222201	178222531	-	lnc-RP11-487E13.1.1-1	lnc-RP11-487E13.1.1-1:1	XLOC_004182	linc-VEGFC-2	NEIL3	NA	chr4:178230991-178232346	inter
CUST_41883_PI429285431	1.6904646	A	1.326224	A	1.28720389795569	0	lncRNA	43568-1_{1..110}	ENST00000384999 ncrna:miRNA chromosome:GRCh37:4:20529898:20530007:1 gene:ENSG00000207732 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384999 ncrna:miRNA chromosome:GRCh37:4:20529898:20530007:1 gene:ENSG00000207732 gene_biotype:miRNA transcript_biotype:miRNA	chr4	 20529898	 20530007	+	ENSG00000207732	ENST00000384999	NA	NA	SLIT2	NA	chr4:20519898-20540007	inner
CUST_9931_PI429285431	5.737174	P	5.5415597	P	1.14521168829194	0	lncRNA	11455-2_{3001..5385}	lnc-C9orf91-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf91-1:1	chr9	117424271	117426655	+	lnc-C9orf91-1	lnc-C9orf91-1:1	XLOC_007528	linc-DEC1	LOC100505478	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30chr9:117428714-117435007"	NA	inter
CUST_46428_PI429285431	1.0398983	A	1.0073221	A	1.02283696133415	0	lncRNA	50640-1_{1..3000}	"gi|223029496|ref|NR_026771.1| Homo sapiens uncharacterized LOC26082 (DKFZP434L187), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223029496|ref|NR_026771.1| Homo sapiens uncharacterized LOC26082 (DKFZP434L187), non-coding RNA"	Chr15	 30488239	 30491238	+	26082	NR_026771.1	NA	NA	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00"	NA	inter
CUST_2586_PI429285431	2.1551576	A	2.5159094	A	0.778758656499594	0	lncRNA	2574-1_{1..499}	"transcript_id ""ENST00000432438.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432438.1"" | genecode_v17"	chr6	 98158829	 98159327	-	ENSG00000226207.1	ENST00000432438.1	RP1-104O17.3	RP1-104O17.3-001	NA	NA	NA	inter
LNCA_21_P0011053	1.5635722	A	0.892544	A	1.5922073197326	0	lncRNA	TCONS_l2_00005786	NA	NA	NA	NA	XLOC_l2_003066	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003066), lincRNA [TCONS_l2_00005786]"	chr12:80633273-80633332	hs|12q21.31	Agilent_HUMAN_G3V2	TCONS_l2_00005786	TCONS_l2_00005786	chr12	 80633273	 80633332	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12633_PI429285431	3.8878984	P	3.9944808	P	0.928785658083744	0	lncRNA	14249-1_{1..1249}	lnc-ONECUT1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ONECUT1-1:5	chr15	 53096691	 53097939	-	lnc-ONECUT1-1	lnc-ONECUT1-1:5	XLOC_011481	linc-ONECUT1	NA	NA	NA	inter
CUST_279_PI429285431	3.0827212	A	3.6320968	P	0.683315804219568	0	lncRNA	271-1_{1..593}	"transcript_id ""ENST00000418078.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418078.2"" | genecode_v17"	chr1	 73230714	 73231306	+	ENSG00000227016.2	ENST00000418078.2	RP11-262K1.1	RP11-262K1.1-001	NA	NA	NA	inter
CUST_226_PI429201921	3.9339228	P	4.2040215	P	0.829262810997341	0	lncRNA	176-2_{3001..5838}	TC02003863.hg.1	TCONS_l2_00015611-XLOC_l2_007785 // Broad TUCP // linc-MRPL44-2 chr2:+:224363490-224369329 // chr2 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr2:+:224363490-224369329	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00015611-XLOC_l2_007785	linc-MRPL44-2	chr2	224363490	224369329	+	NA	NA	NA	NA	RCAN3	NA	chr1:24855292-24862428	Unknown
CUST_29851_PI429285431	0.9018458	A	0.9254358	A	0.983781615538638	0	lncRNA	31614-1_{1..235}	n333750|L07394|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191828|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191828|-1.1320800|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333750|L07394|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191828|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191828|-1.1320800|-1.0000000	chr1	 93646482	 93646716	-	NA	NA	NA	NA	CCDC18	NA	chr1:93646281-93656717	inner
CUST_43719_PI429285431	3.6549857	P	1.3578337	A	4.91486571675289	0	lncRNA	48465-1_{1..3000}	"gi|365192582|ref|NR_027459.2| Homo sapiens synaptotagmin XIV (SYT14), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|365192582|ref|NR_027459.2| Homo sapiens synaptotagmin XIV (SYT14), transcript variant 6, non-coding RNA"	Chr1	210111519	210114518	+	255928	NR_027459.2	NA	NA	NA	NA	NA	inter
CUST_20165_PI429285431	0.8993058	A	0.90688473	A	0.99476046056144	0	lncRNA	21810-1_{1..368}	lnc-AC127496.3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC127496.3-2:1	chr17	 78999064	 78999431	-	lnc-AC127496.3-2	lnc-AC127496.3-2:1	ENSG00000262098.1	CTD-2561B21.10	BAIAP2	NA	chr17:79008947-79009303	inter
CUST_33008_PI429285431	0.8959094	A	0.8936099	A	1.00159516286261	0	lncRNA	34623-1_{1..2362}	n339690|AK055783|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2135|NULL|0.3957270|-0.2417552	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339690|AK055783|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2135|NULL|0.3957270|-0.2417552	chr20	 42985321	 42987682	-	NA	NA	NA	NA	HNF4A	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90chr20:42984441-42997684"	NA	inner
CUST_17890_PI429285431	1.1616964	A	0.8841593	A	1.21212383723718	0	lncRNA	19624-1_{1..3000}	lnc-AL137145.1-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AL137145.1-2:8	chr10	  6627760	  6630759	+	lnc-AL137145.1-2	lnc-AL137145.1-2:8	XLOC_008370	linc-ITIH2-10	NA	NA	NA	inter
CUST_22895_PI429285431	1.779908	A	2.1302888	A	0.784377033902425	0	lncRNA	24472-1_{1..783}	lnc-C11orf36-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf36-3:1	chr11	  3361173	  3361955	+	lnc-C11orf36-3	lnc-C11orf36-3:1	ENSG00000254592.1	RP5-1173A5.1	NA	NA	NA	inter
CUST_1702_PI429285431	8.769039	P	8.626236	P	1.10404807911043	0	lncRNA	1686-1_{1..582}	"transcript_id ""ENST00000503532.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503532.1"" | genecode_v17"	chr4	 13821734	 13822315	+	ENSG00000250634.1	ENST00000503532.1	RP11-341G5.1	RP11-341G5.1-001	NA	NA	NA	inter
LNCA_21_P0008589	2.8960676	A	3.2748313	P	0.769096376136759	0	lncRNA	TCONS_00023306	NA	NA	NA	NA	XLOC_011174	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011174), lincRNA [TCONS_00023306]"	chr15:24525543-24525602	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023306	TCONS_00023306	chr15	 24525543	 24525602	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007322	2.6445794	A	3.015222	P	0.773437918120131	0	lncRNA	TCONS_00019585	NA	NA	NA	NA	XLOC_009383	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009383), lincRNA [TCONS_00019585]"	chr11:16789730-16789671	hs|11p15.1	Agilent_HUMAN_G3V2	TCONS_00019585	TCONS_00019585	chr11	 16789671	 16789730	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15553_PI429285431	5.6068096	P	5.5947776	P	1.0083748211158	0	lncRNA	17238-1_{1..725}	lnc-FGF8-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGF8-1:3	chr10	103523332	103524056	-	lnc-FGF8-1	lnc-FGF8-1:3	XLOC_008927	linc-FBXW4-1	FGF8	NA	chr10:103529887-103533605	inter
CUST_37596_PI429285431	4.325395	A	4.4185553	P	0.937466927320049	0	lncRNA	38695-2_{3001..6000}	n346072|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1622|NULL|-1.5443600|-0.1889036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n346072|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1622|NULL|-1.5443600|-0.1889036	chr6	170191940	170194939	-	NA	NA	NA	NA	C6orf70	NA	chr6:170178940-170181617	inter
CUST_24830_PI429285431	0.9769437	A	0.9090147	A	1.0482108881736	0	lncRNA	26370-1_{1..893}	lnc-PLEKHA8-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLEKHA8-3:1	chr7	 30065003	 30065895	+	lnc-PLEKHA8-3	lnc-PLEKHA8-3:1	ENSG00000227014.1	AC007285.6	PLEKHA8	NA	chr7:30067977-30075216	inter
CUST_39239_PI429285431	1.9965539	A	0.8980916	A	2.14126343754262	0	lncRNA	40210-1_{1..2355}	n386083|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ayc.2||7.6376100|-0.2730584	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n386083|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ayc.2||7.6376100|-0.2730584	chr15	 23190858	 23193212	-	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20"	NA	inter
CUST_28527_PI429285431	5.448756	P	5.7288365	P	0.823545063531437	0	lncRNA	30197-1_{1..318}	n325874|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050604|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050604|-1.2200800|-0.3939757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325874|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050604|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050604|-1.2200800|-0.3939757	chr10	120107046	120107363	+	NA	NA	NA	NA	FAM204A	NA	chr10:120097046-120101839	inter
CUST_640_PI429285431	0.90852064	A	1.1201801	A	0.863543369044668	0	lncRNA	632-1_{1..853}	"transcript_id ""ENST00000436808.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436808.2"" | genecode_v17"	chr2	   318053	   318905	+	ENSG00000233684.2	ENST00000436808.2	AC079779.6	AC079779.6-002	NA	NA	NA	inter
CUST_29249_PI429285431	8.107731	P	8.835503	P	0.603835716924618	0	lncRNA	31000-1_{1..321}	n332334|FJ626417|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558851|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558851|1.0864300|-0.1683896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332334|FJ626417|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558851|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558851|1.0864300|-0.1683896	chr9	 37002659	 37002979	-	NA	NA	NA	NA	PAX5	NA	chr9:36992659-37034476	inner
CUST_38001_PI429285431	0.89779735	A	0.9036274	A	0.995967071467139	0	lncRNA	39087-2_{3001..3610}	n377575|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029938||-0.8281050|-0.2132583	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377575|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029938||-0.8281050|-0.2132583	chr6	  1111576	  1112185	+	NA	NA	NA	NA	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-65.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30"	NA	inter
CUST_32020_PI429285431	5.094097	P	5.450554	P	0.781080419493955	0	lncRNA	33741-1_{1..3000}	n338585|AL162037|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|991|NULL|-0.6356370|-0.3741151	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338585|AL162037|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|991|NULL|-0.6356370|-0.3741151	chr1	239411106	239414105	-	NA	NA	NA	NA	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.82;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50"	NA	inter
CUST_23019_PI429285431	1.8384756	A	0.89732736	A	1.92005580178099	0	lncRNA	24591-1_{1..754}	lnc-PDZD8-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDZD8-2:2	chr10	119301608	119302361	-	lnc-PDZD8-2	lnc-PDZD8-2:2	ENSG00000229847.2	EMX2OS	EMX2	NA	chr10:119301956-119309057	inter
CUST_19418_PI429285431	0.91961825	A	0.90343904	A	1.01127769285835	0	lncRNA	21079-1_{1..693}	lnc-PNMA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PNMA1-1:1	chr14	 74166867	 74167559	-	lnc-PNMA1-1	lnc-PNMA1-1:1	ENSG00000258660.1	RP4-693M11.3	DNAL1	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50chr14:74156867-74170431"	NA	inner
CUST_16493_PI429285431	0.91948754	A	1.2928456	A	0.771983512054084	0	lncRNA	18191-1_{1..507}	lnc-CRYBA4-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-8:1	chr22	 27710722	 27711228	+	lnc-CRYBA4-8	lnc-CRYBA4-8:1	XLOC_014197	linc-HSCB-6	NA	NA	NA	inter
CUST_1396_PI429285431	3.9843826	P	3.9729352	P	1.00796629645612	0	lncRNA	1385-1_{1..591}	"transcript_id ""ENST00000471614.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000471614.1"" | genecode_v17"	chr3	 81889698	 81890288	+	ENSG00000242009.1	ENST00000471614.1	RP11-359D24.1	RP11-359D24.1-001	NA	NA	NA	inter
CUST_11865_PI429285431	5.252871	P	5.5631695	P	0.806474878730732	0	lncRNA	13444-1_{1..933}	lnc-C1orf31-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf31-6:4	chr1	234802078	234803010	+	lnc-C1orf31-6	lnc-C1orf31-6:4	XLOC_000624	linc-GGPS1-4	NA	NA	NA	inter
CUST_38468_PI429285431	7.2104445	P	6.527797	P	1.60508255266467	0	lncRNA	39487-1_{1..1672}	n382930|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dkc.1||0.7987580|-0.3525430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382930|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dkc.1||0.7987580|-0.3525430	chr16	 22091142	 22092813	+	NA	NA	NA	NA	C16orf52	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50chr16:22081142-22095975"	NA	inner
CUST_10687_PI429285431	1.7183634	A	0.89135027	A	1.7740087555244	0	lncRNA	12221-1_{1..621}	lnc-TAF4B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TAF4B-1:3	chr18	 24017854	 24018474	+	lnc-TAF4B-1	lnc-TAF4B-1:3	XLOC_012647	linc-DSG1-8	NA	NA	NA	inter
CUST_40964_PI429285431	3.4407072	P	3.523917	P	0.943955137061739	0	lncRNA	41638-1_{1..656}	n410990|NR_038452|lncRNA|Homosapiens||RefGeneNoncode|NR_038452||-1.0029700|-0.1379259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410990|NR_038452|lncRNA|Homosapiens||RefGeneNoncode|NR_038452||-1.0029700|-0.1379259	chr19	 47987538	 47988193	+	NA	NA	NA	NA	NAPA	"hg19_refFlat_NAPA:range=chr19:47991545-480181975'pad=0,hg19_refFlat_NAPA:range=chr19:47991545-480181975'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00chr19:47990891-48014854"	NA	inter
CUST_21492_PI429285431	0.9126657	A	1.5380073	A	0.648266263264375	0	lncRNA	23110-1_{1..398}	lnc-SPATA19-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SPATA19-3:1	chr11	132729907	132730304	-	lnc-SPATA19-3	lnc-SPATA19-3:1	ENSG00000255371.1	OPCML-IT2	OPCML	NA	chr11:132719907-132739972	inner
LNCA_21_P0005465	0.90921164	A	0.902483	A	1.00467483093142	0	lncRNA	TCONS_00013676	NA	NA	NA	NA	XLOC_006338	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006338), lincRNA [TCONS_00013676]"	chr7:3137099-3137040	hs|7p22.2	Agilent_HUMAN_G3V2	TCONS_00013676	TCONS_00013676	chr7	  3137040	  3137099	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25010_PI429285431	1.0028663	A	0.90325105	A	1.0714876711206	0	lncRNA	26550-1_{1..428}	lnc-SLC7A6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC7A6-1:1	chr16	 68352647	 68353074	+	lnc-SLC7A6-1	lnc-SLC7A6-1:1	ENSG00000259797.1	RP11-96D1.3	PRMT7	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr16:68344877-68362939"	NA	inner
CUST_15099_PI429285431	5.601968	P	6.0818424	P	0.717040046285031	0	lncRNA	16763-1_{1..885}	lnc-ANKRD27-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD27-2:2	chr19	 32895897	 32896781	-	lnc-ANKRD27-2	lnc-ANKRD27-2:2	XLOC_013300	linc-TSHZ3-6	DPY19L3	NA	chr19:32896655-32906308	inter
LNCA_21_P0008726	0.90837497	A	1.6056051	A	0.616755195993682	0	lncRNA	TCONS_00023635	NA	NA	NA	NA	XLOC_011434	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011434), lincRNA [TCONS_00023635]"	chr15:39156935-39156876	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00023635	TCONS_00023635	chr15	 39156876	 39156935	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33507_PI429285431	0.8974531	A	0.9010729	A	0.997494090881295	0	lncRNA	35079-1_{1..1101}	n340246|BC042377|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2707|NULL|-1.1759500|-0.2983101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340246|BC042377|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2707|NULL|-1.1759500|-0.2983101	chr4	146418229	146419329	-	NA	NA	NA	NA	SMAD1	NA	chr4:146408229-146434123	inner
CUST_3116_PI429285431	1.076779	A	0.965603	A	1.08010831842611	0	lncRNA	3095-1_{1..499}	"transcript_id ""ENST00000523166.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523166.1"" | genecode_v17"	chr8	 57449616	 57450114	-	ENSG00000253139.1	ENST00000523166.1	RP11-17A4.3	RP11-17A4.3-001	NA	NA	NA	inter
CUST_16165_PI429285431	1.5446869	A	1.058598	A	1.40064262692532	0	lncRNA	17871-1_{1..598}	lnc-ATP8A1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP8A1-1:3	chr4	 42393192	 42393789	-	lnc-ATP8A1-1	lnc-ATP8A1-1:3	XLOC_003939	linc-BEND4	SHISA3	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40chr4:42399856-42403250"	NA	inter
CUST_15736_PI429285431	5.884101	P	5.7561483	P	1.09274191202851	0	lncRNA	17421-1_{1..384}	lnc-LRMP-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRMP-4:1	chr12	 24893657	 24894040	+	lnc-LRMP-4	lnc-LRMP-4:1	XLOC_009689	linc-LRMP-2	NA	NA	NA	inter
CUST_45634_PI429285431	5.737422	P	4.834949	P	1.86926744875181	0	lncRNA	50016-2_{3001..5923}	"gi|228480308|ref|NR_027512.1| Homo sapiens BEN domain containing 3 pseudogene (LOC650623), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|228480308|ref|NR_027512.1| Homo sapiens BEN domain containing 3 pseudogene (LOC650623), non-coding RNA"	Chr10	 81445731	 81448653	+	650623	NR_027512.1	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
CUST_51700_PI429285431	0.9059369	A	1.2219093	A	0.803309364610778	0	lncRNA	55259-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00011771 range=chr18:11638006-11677400 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011771 range=chr18:11638006-11677400 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr18	 11641006	 11644005	+	NA	NA	NA	NA	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NPIPL3:range=chr16:21413605-214364195'pad=0,hg19_refFlat_NPIPL3:range=chr16:21413605-214364195'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LOC100132247:range=chr16:22525123-225477065'pad=0,hg19_refFlat_LOC100132247:range=chr16:22525123-225477065'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ACSM1:range=chr16:20634808-207025105'pad=0,hg19_refFlat_ACSM1:range=chr16:20634808-207025105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60"	NA	inter
CUST_21633_PI429285431	1.0056273	A	0.91308737	A	1.06624570488172	0	lncRNA	23245-1_{1..523}	lnc-CLIP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CLIP1-1:1	chr12	122740143	122740665	-	lnc-CLIP1-1	lnc-CLIP1-1:1	ENSG00000223456.2	RP11-512M8.6	VPS33A	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70chr12:122730143-122750275"	NA	inner
CUST_47316_PI429285431	2.438836	A	3.2030735	A	0.588764462967596	0	lncRNA	51377-1_{1..3000}	"gi|392933950|ref|NR_072975.1| Homo sapiens CCCTC-binding factor (zinc finger protein)-like (CTCFL), transcript variant 17, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392933950|ref|NR_072975.1| Homo sapiens CCCTC-binding factor (zinc finger protein)-like (CTCFL), transcript variant 17, non-coding RNA"	Chr20	 56074610	 56077609	-	140690	NR_072975.1	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70"	NA	inter
CUST_29610_PI429285431	4.94163	P	5.0883627	P	0.903293855345585	0	lncRNA	31371-1_{1..395}	n333147|AF369211|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078517|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078517|2.7257000|-0.0837706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333147|AF369211|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078517|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078517|2.7257000|-0.0837706	chr4	  1803189	  1803583	+	NA	NA	NA	NA	LETM1	NA	chr4:1813206-1815466	inner
CUST_13447_PI429285431	0.9037505	A	0.91933465	A	0.98925602364338	0	lncRNA	15085-1_{1..785}	lnc-TRIP11-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TRIP11-1:3	chr14	 92516685	 92517469	-	lnc-TRIP11-1	lnc-TRIP11-1:3	XLOC_011104	linc-TRIP11	ATXN3	NA	chr14:92524896-92526880	inter
CUST_22425_PI429285431	0.9268725	A	0.97427744	A	0.967675378725008	0	lncRNA	24014-1_{1..3000}	lnc-GLB1L2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLB1L2-1:4	chr11	134355856	134358855	+	lnc-GLB1L2-1	lnc-GLB1L2-1:4	ENSG00000255545.2	RP11-627G23.1	NA	NA	NA	inter
CUST_45657_PI429285431	2.8703814	A	2.6325605	A	1.17921019288411	0	lncRNA	50033-2_{3001..4309}	"gi|335353795|ref|NR_038382.1| Homo sapiens hCG2024094 (LOC643529), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|335353795|ref|NR_038382.1| Homo sapiens hCG2024094 (LOC643529), non-coding RNA"	Chr10	 91592250	 91593558	+	643529	NR_038382.1	NA	NA	NA	NA	NA	inter
CUST_27018_PI429285431	1.2861528	A	1.2597615	A	1.01846139805541	0	lncRNA	28548-1_{1..574}	n324123|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052321|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052321|-1.0905000|-0.4117131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324123|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052321|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052321|-1.0905000|-0.4117131	chr9	 35636266	 35636839	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80"	NA	inter
LNCA_21_P0014413	4.3529954	P	4.734608	P	0.76757913468375	0	lncRNA	XR_109666	XR_109666	XR_109666	NA	NA	LOC100506284	uncharacterized LOC100506284	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506284 (LOC100506284), miscRNA [XR_109666]"	chr21:34968069-34968128	hs|21q22.11	Agilent_HUMAN_G3V2	XR_109666	XR_109666	chr21	 34968069	 34968128	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00318370	0.91480595	A	0.924215	A	0.993499364667899	0	lncRNA	TCONS_00005565	NA	NA	NA	NA	XLOC_002746	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002746), lincRNA [TCONS_00005565]"	chr3:106964296-106964355	hs|3q13.12	Agilent_HUMAN_G3V2	TCONS_00005565	TCONS_00005565	chr3	106964296	106964355	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17987_PI429285431	1.002278	A	2.2394443	A	0.424205049758938	0	lncRNA	19720-1_{1..616}	lnc-FMN1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FMN1-2:5	chr15	 33534436	 33535051	-	lnc-FMN1-2	lnc-FMN1-2:5	XLOC_011417	linc-FMN1-4	LOC100652857	NA	chr15:33533735-33538807	inter
CUST_305_PI429201921	5.9133015	P	5.5458627	P	1.29006056676022	0	lncRNA	209-1_{1..3000}	TC13001368.hg.1	 TCONS_l2_00007500-XLOC_l2_003911 // Broad TUCP // linc-FAM123A chr13:-:25749015-25754139 // chr13 // 100 // 100 // 0 // --- // 0///TCONS_l2_00007499-XLOC_l2_003911 // Broad TUCP // linc-FAM123A chr13:-:25746965-25754217 // chr13 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00007088-XLOC_l2_003911 // Broad TUCP // linc-FAM123A chr13:-:25747054-25748221 // chr13 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr13:-:25746965-25754217	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00007499-XLOC_l2_003911	linc-FAM123A	chr13	 25746965	 25754217	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33986_PI429285431	3.079687	A	4.225714	P	0.451867906600342	0	lncRNA	35523-1_{1..1295}	n340799|BC073826|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3262|NULL|-0.8084670|-0.0962282	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340799|BC073826|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3262|NULL|-0.8084670|-0.0962282	chr6	  1384026	  1385320	-	NA	NA	NA	NA	FOXF2	NA	chr6:1390069-1395301	inter
LNCA_21_P0005681	0.91436255	A	0.9213201	A	0.995189003927877	0	lncRNA	TCONS_00014666	NA	NA	NA	NA	XLOC_006764	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006764), lincRNA [TCONS_00014666]"	chr8:31144808-31144867	hs|8p12	Agilent_HUMAN_G3V2	TCONS_00014666	TCONS_00014666	chr8	 31144808	 31144867	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5879_PI429285431	0.8998601	A	0.9047526	A	0.99661452111985	0	lncRNA	5809-1_{1..816}	"transcript_id ""ENST00000581213.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581213.1"" | genecode_v17"	chr17	 45940708	 45941523	+	ENSG00000264243.1	ENST00000581213.1	RP11-6N17.1	RP11-6N17.1-001	SP6	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.60chr17:45930708-45933240"	NA	inter
CUST_51851_PI429285431	4.868776	P	5.714386	P	0.556475470528842	0	lncRNA	55406-1_{1..420}	hg19_lincRNAsTranscripts_TCONS_l2_00012574 range=chr19:45429811-45434368 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012574 range=chr19:45429811-45434368 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 45429811	 45430230	+	NA	NA	NA	NA	APOC1	NA	chr19:45419811-45422606	inter
CUST_10751_PI429285431	2.690239	A	2.3965003	A	1.22581282151442	0	lncRNA	12287-1_{1..3000}	lnc-AC114947.1.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AC114947.1.1-2:3	chr5	 43080002	 43083001	+	lnc-AC114947.1.1-2	lnc-AC114947.1.1-2:3	XLOC_004366	linc-ZNF131-1	NA	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60"	NA	inter
CUST_44295_PI429285431	10.949976	P	11.775231	P	0.564382437562166	0	lncRNA	48928-1_{1..1396}	"gi|298231215|ref|NR_033722.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 19 (DNAJC19), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|298231215|ref|NR_033722.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 19 (DNAJC19), transcript variant 4, non-coding RNA"	Chr3	180701497	180702892	-	131118	NR_033722.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10"	NA	inter
CUST_49242_PI429285431	1.1019014	A	1.3699303	A	0.830453388320597	0	lncRNA	53064-1_{1..2589}	hg19_lincRNAsTranscripts_TCONS_l2_00022761 range=chr5:4775193-4868256 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022761 range=chr5:4775193-4868256 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	  4775193	  4777781	-	NA	NA	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-58.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.43;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-55.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30"	NA	inter
CUST_18593_PI429285431	4.0883336	P	4.4042945	P	0.803315767969944	0	lncRNA	20300-1_{1..587}	lnc-BCL7A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BCL7A-1:2	chr12	122502456	122503042	+	lnc-BCL7A-1	lnc-BCL7A-1:2	ENSG00000256546	AC156455.1	BCL7A	NA	chr12:122492456-122499950	inter
CUST_7642_PI429285431	7.8269634	P	8.5433855	P	0.608604919220135	0	lncRNA	9274-1_{1..1048}	lnc-DNAJC7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DNAJC7-1:1	chr17	 40125663	 40126710	-	lnc-DNAJC7-1	lnc-DNAJC7-1:1	ENSG00000247918	ENST00000499234	TTC25	"hg19_refFlat_CNP:range=chr17:40118903-401259425'pad=0,hg19_refFlat_CNP:range=chr17:40118903-401259425'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.80chr17:40115663-40117669"	NA	inner
CUST_9744_PI429285431	0.9203602	A	1.029809	A	0.926942144287642	0	lncRNA	11261-1_{1..989}	lnc-ZNF572-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF572-1:7	chr8	125963058	125964046	+	lnc-ZNF572-1	lnc-ZNF572-1:7	XLOC_006916	linc-ZNF572	NA	NA	NA	inter
CUST_42467_PI429285431	4.776001	P	5.000555	P	0.855859568334104	0	lncRNA	45214-1_{1..127}	ENST00000459613 ncrna:snoRNA chromosome:GRCh37:4:140357522:140357648:-1 gene:ENSG00000239005 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459613 ncrna:snoRNA chromosome:GRCh37:4:140357522:140357648:-1 gene:ENSG00000239005 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	140357522	140357648	-	ENSG00000239005	ENST00000459613	NA	NA	NA	NA	NA	inter
CUST_3459_PI429285431	1.329601	A	1.7386576	A	0.753115686404486	0	lncRNA	3430-1_{1..455}	"transcript_id ""ENST00000436084.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436084.1"" | genecode_v17"	chr9	 85020103	 85020557	+	ENSG00000225085.1	ENST00000436084.1	RP11-15B24.1	RP11-15B24.1-001	NA	NA	NA	inter
CUST_4000_PI429285431	4.5358315	P	5.096629	P	0.677927312161717	0	lncRNA	3961-1_{1..371}	"transcript_id ""ENST00000561588.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561588.1"" | genecode_v17"	chr11	 69186231	 69186601	+	ENSG00000260877.1	ENST00000561588.1	RP11-211G23.2	RP11-211G23.2-001	NA	NA	NA	inter
CUST_41935_PI429285431	1.1371155	A	1.3685305	A	0.851799034658796	0	lncRNA	43685-1_{1..79}	ENST00000385080 ncrna:miRNA chromosome:GRCh37:3:15915278:15915356:1 gene:ENSG00000207815 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385080 ncrna:miRNA chromosome:GRCh37:3:15915278:15915356:1 gene:ENSG00000207815 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 15915278	 15915356	+	ENSG00000207815	ENST00000385080	NA	NA	NA	NA	NA	inter
CUST_14933_PI429285431	1.550052	A	1.7893327	A	0.847167588550444	0	lncRNA	16596-1_{1..1339}	lnc-LBH-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LBH-2:8	chr2	 30582334	 30583672	+	lnc-LBH-2	lnc-LBH-2:8	XLOC_001412	linc-LCLAT1-1	NA	NA	NA	inter
CUST_15650_PI429285431	1.5821478	A	1.5222495	A	1.04239227682117	0	lncRNA	17343-1_{1..543}	lnc-CTD-2203A3.1.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2203A3.1.1-2:2	chr5	 51621172	 51621714	+	lnc-CTD-2203A3.1.1-2	lnc-CTD-2203A3.1.1-2:2	XLOC_004381	linc-PELO-1	NA	NA	NA	inter
LNCA_21_P0003438	4.1512084	P	5.163866	P	0.495632397892946	0	lncRNA	ENST00000509058	NA	NA	NA	NA	XLOC_003826	NA	ENST00000509058	NA	NA	"BROAD Institute lincRNA (XLOC_003826), lincRNA [TCONS_00007694]"	chr4:188293013-188293072	hs|4q35.2	Agilent_HUMAN_G3V2	ENST00000509058	ENST00000509058	chr4	188293013	188293072	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14294_PI429285431	0.8905871	A	0.89128304	A	0.999517727481956	0	lncRNA	15953-1_{1..1155}	lnc-GLB1L2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLB1L2-3:1	chr11	134585601	134586755	+	lnc-GLB1L2-3	lnc-GLB1L2-3:1	XLOC_009345	TCONS_00019550	NA	NA	NA	inter
CUST_28712_PI429285431	0.8956445	A	1.0917044	A	0.872931346694225	0	lncRNA	30412-1_{1..403}	n326102|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046503|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046503|-0.2801520|-0.3215767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326102|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046503|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046503|-0.2801520|-0.3215767	chr10	  3964895	  3965297	+	NA	NA	NA	NA	NA	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10"	NA	inter
CUST_40451_PI429285431	1.1351581	A	1.8304255	A	0.61759483826055	0	lncRNA	41225-1_{1..1144}	n409359|NR_033724|lncRNA|Homosapiens||RefGeneNoncode|NR_033724||0.0172577|-0.3073221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409359|NR_033724|lncRNA|Homosapiens||RefGeneNoncode|NR_033724||0.0172577|-0.3073221	chr3	180704967	180706110	-	NA	NA	NA	NA	FXR1	NA	chr3:180694967-180700541	inter
CUST_46722_PI429285431	6.4996424	P	6.3601623	P	1.10150809693481	0	lncRNA	50878-1_{1..3000}	"gi|380036036|ref|NR_046385.2| Homo sapiens smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) (SMG6), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|380036036|ref|NR_046385.2| Homo sapiens smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) (SMG6), transcript variant 5, non-coding RNA"	Chr17	  1963133	  1966132	-	23293	NR_046385.2	NA	NA	NA	NA	NA	inter
CUST_27509_PI429285431	3.057784	A	3.4278443	P	0.773750155834166	0	lncRNA	29080-1_{1..571}	n324688|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320630|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320630|-1.0495100|-0.2738746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324688|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320630|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320630|-1.0495100|-0.2738746	chr22	 26057747	 26058317	+	NA	NA	NA	NA	ADRBK2	NA	chr22:26047747-26115226	inner
CUST_18327_PI429285431	6.354984	P	6.071086	P	1.21747993855579	0	lncRNA	20056-1_{1..1389}	lnc-C12orf73-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C12orf73-1:1	chr12	104424907	104426295	-	lnc-C12orf73-1	lnc-C12orf73-1:1	ENSG00000197041	AC078819.1	HCFC2	"hg19_refFlat_PGAM4:range=chrX:77224371-772251355'pad=0,hg19_refFlat_PGAM4:range=chrX:77224371-772251355'pad=0 3'pad=0 strand=- repeatMasking=none,-106.10;hg19_refFlat_PGAM1:range=chr10:99186065-991922815'pad=0,hg19_refFlat_PGAM1:range=chr10:99186065-991922815'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.10chr12:104424519-104436026"	NA	inner
CUST_25201_PI429285431	1.1021245	A	2.5000286	A	0.379480037511324	0	lncRNA	26732-1_{1..788}	lnc-LMOD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LMOD1-1:1	chr1	201978928	201979715	-	lnc-LMOD1-1	lnc-LMOD1-1:1	ENSG00000234678.1	RP11-465N4.4	ELF3	NA	chr1:201979690-201986316	inter
CUST_22173_PI429285431	7.581979	P	7.5273485	P	1.03859306697295	0	lncRNA	23775-1_{1..682}	lnc-CHRNA6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHRNA6-1:1	chr8	 42576945	 42577626	-	lnc-CHRNA6-1	lnc-CHRNA6-1:1	ENSG00000255101.1	RP11-412B14.1	CHRNB3	NA	chr8:42566945-42587089	inner
CUST_11433_PI429285431	4.1524124	P	4.252728	P	0.932828906128642	0	lncRNA	13001-1_{1..359}	lnc-RXRA-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RXRA-3:2	chr9	137436766	137437124	+	lnc-RXRA-3	lnc-RXRA-3:2	XLOC_007599	linc-COL5A1-4	NA	NA	NA	inter
CUST_29120_PI429285431	1.3721204	A	1.3241475	A	1.03381131665545	0	lncRNA	30855-1_{1..1807}	n326620|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021843|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021843|-0.6617740|-0.3295284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326620|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021843|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021843|-0.6617740|-0.3295284	chr1	 48056324	 48058130	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11121_PI429285431	1.0011584	A	1.2987357	A	0.813617547714005	0	lncRNA	12678-1_{1..822}	lnc-OLIG2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OLIG2-1:1	chr21	 34260979	 34261800	+	lnc-OLIG2-1	lnc-OLIG2-1:1	XLOC_013917	linc-OLIG2-2	NA	NA	NA	inter
CUST_16848_PI429285431	1.262642	A	2.2024128	A	0.521315694919188	0	lncRNA	18556-1_{1..753}	lnc-ZNF674-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF674-1:6	chrX	 46186986	 46187738	-	lnc-ZNF674-1	lnc-ZNF674-1:6	XLOC_008151	linc-CXorf36-3	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.71;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-62.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00"	NA	inter
CUST_45196_PI429285431	1.0281321	A	1.4706328	A	0.735858000772192	0	lncRNA	49662-1_{1..972}	"gi|310120210|ref|XR_108906.1| PREDICTED: Homo sapiens short chain dehydrogenase/reductase family 16C, member 6, pseudogene (SDR16C6P), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120210|ref|XR_108906.1| PREDICTED: Homo sapiens short chain dehydrogenase/reductase family 16C, member 6, pseudogene (SDR16C6P), misc_RNA"	NA	NA	NA	NA	NA	XR_108906.1	NA	NA	NA	NA	NA	Unknown
CUST_40990_PI429285431	0.89765847	A	0.90279335	A	0.996447098947927	0	lncRNA	41658-1_{1..1817}	n411136|NR_038964|lncRNA|Homosapiens||RefGeneNoncode|NR_038964||-1.2402400|-0.2713485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n411136|NR_038964|lncRNA|Homosapiens||RefGeneNoncode|NR_038964||-1.2402400|-0.2713485	chr6	 11043990	 11045806	+	NA	NA	NA	NA	ELOVL2	NA	chr6:11033990-11044624	inner
CUST_46931_PI429285431	1.0916529	A	1.4998848	A	0.753546319382045	0	lncRNA	51041-1_{1..747}	"gi|397139658|ref|XR_158920.1| PREDICTED: Homo sapiens uncharacterized LOC100507191 (LOC100507191), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139658|ref|XR_158920.1| PREDICTED: Homo sapiens uncharacterized LOC100507191 (LOC100507191), misc_RNA"	Chr17	 73817251	 73817997	-	100507191	XR_158920.2	NA	NA	NA	NA	NA	inter
CUST_3135_PI429285431	1.5139983	A	1.8792742	A	0.776320397829175	0	lncRNA	3114-1_{1..557}	"transcript_id ""ENST00000526936.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526936.1"" | genecode_v17"	chr8	 61822612	 61823168	+	ENSG00000254777.1	ENST00000526936.1	AC022182.1	AC022182.1-003	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40"	NA	inter
LNCA_21_P0005050	1.8481963	A	1.4163854	A	1.34892571348481	0	lncRNA	THC2745380	NA	NA	NA	NA	XLOC_005807	NA	NA	THC2745380	NA	"BROAD Institute lincRNA (XLOC_005807), lincRNA [TCONS_00012251]"	chr6:112713691-112713632	hs|6q21	Agilent_HUMAN_G3V2	THC2745380	THC2745380	chr6	112713632	112713691	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010585	0.895016	A	0.89061415	A	1.00305578935127	0	lncRNA	THC2729137	NA	NA	NA	NA	XLOC_l2_000696	NA	NA	THC2729137	NA	"BROAD Institute lincRNA (XLOC_l2_000696), lincRNA [TCONS_l2_00000924]"	chr1:241596871-241596930	hs|1q43	Agilent_HUMAN_G3V2	THC2729137	THC2729137	chr1	241596871	241596930	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51656_PI429285431	2.440807	A	2.3918574	A	1.03451144062574	0	lncRNA	55225-1_{1..1159}	hg19_lincRNAsTranscripts_TCONS_l2_00011404 range=chr17:62963991-62971937 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011404 range=chr17:62963991-62971937 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 62963991	 62965149	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4888_PI429285431	0.9105174	A	0.8996333	A	1.00757281303316	0	lncRNA	4830-1_{1..1174}	"transcript_id ""ENST00000555539.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000555539.1"" | genecode_v17"	chr14	 74289262	 74290435	-	ENSG00000258586.1	ENST00000555539.1	RP5-1021I20.2	RP5-1021I20.2-001	NA	NA	NA	inter
LNCA_21_P0010486	0.8954179	A	2.7186012	A	0.282596734489033	0	lncRNA	THC2478115	NA	NA	NA	NA	XLOC_014484	NA	NA	THC2478115	NA	"BROAD Institute lincRNA (XLOC_014484), lincRNA [TCONS_00030000]"	chr6:032847429-032847488	hs|6p21.32	Agilent_HUMAN_G3V2	THC2478115	THC2478115	chr6	 32847429	 32847488	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10951_PI429285431	0.90316945	A	0.9136578	A	0.992756392079267	0	lncRNA	12492-1_{1..550}	lnc-ESM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ESM1-1:1	chr5	 54319757	 54320306	-	lnc-ESM1-1	lnc-ESM1-1:1	XLOC_004823	linc-ESM1	GZMK	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr5:54320107-54329960"	NA	inter
CUST_41164_PI429285431	4.7983155	P	4.817483	P	0.986801969401703	0	lncRNA	41985-1_{1..75}	ENST00000577367 ncrna:miRNA chromosome:GRCh37:3:194855235:194855309:-1 gene:ENSG00000265333 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577367 ncrna:miRNA chromosome:GRCh37:3:194855235:194855309:-1 gene:ENSG00000265333 gene_biotype:miRNA transcript_biotype:miRNA	chr3	194855235	194855309	-	ENSG00000265333	ENST00000577367	NA	NA	C3orf21	NA	chr3:194845235-194865309	inner
CUST_39593_PI429285431	5.6753435	P	6.021765	P	0.786532617203695	0	lncRNA	40536-1_{1..1114}	n387597|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jha.1||-1.0794000|-0.2870206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387597|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jha.1||-1.0794000|-0.2870206	chr6	  1976469	  1977582	-	NA	NA	NA	NA	GMDS	NA	chr6:1966469-1989473	inner
CUST_6104_PI429285431	5.59185	P	6.3180842	P	0.604479701696922	0	lncRNA	6030-1_{1..1101}	"transcript_id ""ENST00000583306.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583306.1"" | genecode_v17"	chr18	 14978738	 14979838	+	ENSG00000263821.1	ENST00000583306.1	RP11-527H14.1	RP11-527H14.1-001	NA	NA	NA	inter
CUST_37718_PI429285431	5.6362834	P	5.4995594	P	1.09940580338562	0	lncRNA	38817-1_{1..400}	n346221|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1771|NULL|-1.5205700|-0.1569959	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346221|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1771|NULL|-1.5205700|-0.1569959	chr2	 58655454	 58655853	+	NA	NA	NA	NA	NA	"hg19_refFlat_IK:range=chr5:140027494-1400419145'pad=0,hg19_refFlat_IK:range=chr5:140027494-1400419145'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90"	NA	inter
CUST_17147_PI429285431	7.8402104	P	7.4035826	P	1.35343706161799	0	lncRNA	18855-2_{3001..3681}	lnc-FBXW11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXW11-2:1	chr5	171166981	171167661	-	lnc-FBXW11-2	lnc-FBXW11-2:1	XLOC_005081	linc-KCNMB1-2	C5orf50	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80chr5:171153981-171174435"	NA	inter
CUST_25074_PI429285431	1.776487	A	2.6028397	A	0.563953180542097	0	lncRNA	26611-1_{1..570}	lnc-RP11-419C23.1.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-419C23.1.1-3:2	chr8	 36636556	 36637125	-	lnc-RP11-419C23.1.1-3	lnc-RP11-419C23.1.1-3:2	ENSG00000253363.1	RP11-962G15.1	KCNU1	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50chr8:36641842-36646682"	NA	inter
CUST_19111_PI429285431	1.2847266	A	1.2574176	A	1.01910944863088	0	lncRNA	20796-2_{3001..6000}	lnc-EGLN1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-EGLN1-3:1	NA	     3000	     5999	NA	NA	NA	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_DISC1:range=chr1:231762614-2321446375'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321446375'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2319542715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319542715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_DISC1:range=chr1:231762614-2320946385'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2320946385'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_DISC1:range=chr1:231762614-2320023245'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2320023245'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_DISC1:range=chr1:231762614-2321449005'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321449005'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_DISC1:range=chr1:231762614-2319541255'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319541255'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50"	NA	Unknown
CUST_58_PI429285431	0.90670943	A	0.9024654	A	1.00294606858426	0	lncRNA	57-1_{1..1209}	"transcript_id ""ENST00000356328.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000356328.3"" | genecode_v17"	chr16	 29370433	 29371641	+	ENSG00000198106.7	ENST00000356328.3	SNX29P2	SNX29P2-201	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
CUST_26744_PI429285431	1.4437348	A	0.9186245	A	1.43904359663715	0	lncRNA	28237-1_{1..617}	n323787|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060955|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060955|-0.9989480|-0.2286229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323787|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060955|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060955|-0.9989480|-0.2286229	chrX	152529342	152529958	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20018_PI429285431	3.712438	P	3.9154544	P	0.868732309681135	0	lncRNA	21671-1_{1..454}	lnc-RABEP2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RABEP2-4:1	chr16	 29001732	 29002185	-	lnc-RABEP2-4	lnc-RABEP2-4:1	ENSG00000261552.1	RP11-264B17.5	LAT	NA	chr16:28996147-29002104	inner
CUST_2595_PI429285431	6.542067	P	6.6969357	P	0.898214115832763	0	lncRNA	2583-1_{1..717}	"transcript_id ""ENST00000426008.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426008.1"" | genecode_v17"	chr6	108444719	108445435	+	ENSG00000225174.1	ENST00000426008.1	OSTM1-AS1	OSTM1-AS1-002	NR2E1	NA	chr6:108487215-108487902	inter
CUST_12553_PI429285431	0.88871384	A	0.9645904	A	0.948765490023977	0	lncRNA	14164-1_{1..452}	lnc-DYDC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DYDC1-2:1	chr10	 83577133	 83577584	-	lnc-DYDC1-2	lnc-DYDC1-2:1	XLOC_008874	linc-DYDC1-4	NA	NA	NA	inter
CUST_48853_PI429285431	0.9106951	A	2.0601635	A	0.450791306952983	0	lncRNA	52689-1_{1..1766}	hg19_lincRNAsTranscripts_TCONS_l2_00019606 range=chr3:162845745-163022241 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019606 range=chr3:162845745-163022241 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	162845745	162847510	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51044_PI429285431	1.6123894	A	1.9226294	A	0.806507581232377	0	lncRNA	54686-1_{1..2929}	hg19_lincRNAsTranscripts_TCONS_l2_00006715 range=chr13:21864826-21869460 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006715 range=chr13:21864826-21869460 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 21864826	 21867754	+	NA	NA	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20"	NA	inter
CUST_49473_PI429285431	13.515678	P	13.047171	P	1.3836768030581	0	lncRNA	53267-2_{3001..3768}	hg19_lincRNAsTranscripts_TCONS_l2_00024547 range=chr6:171045718-171055061 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024547 range=chr6:171045718-171055061 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	171048718	171049485	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00"	NA	inter
CUST_42537_PI429285431	1.2396816	A	1.0009291	A	1.17997189715855	0	lncRNA	45336-1_{1..142}	ENST00000516991 ncrna:snoRNA chromosome:GRCh37:14:63945990:63946131:1 gene:ENSG00000252800 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516991 ncrna:snoRNA chromosome:GRCh37:14:63945990:63946131:1 gene:ENSG00000252800 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 63945990	 63946131	+	ENSG00000252800	ENST00000516991	NA	NA	PPP2R5E	NA	chr14:63935990-63956131	inner
CUST_2872_PI429285431	0.9215075	A	0.9066993	A	1.01031712031264	0	lncRNA	2853-1_{1..691}	"transcript_id ""ENST00000436600.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436600.2"" | genecode_v17"	chr7	 69060944	 69061634	-	ENSG00000234215.2	ENST00000436600.2	RP5-942I16.1	RP5-942I16.1-001	AUTS2	NA	chr7:69063905-69072434	inter
CUST_38533_PI429285431	1.1861721	A	0.9045242	A	1.21558257539251	0	lncRNA	39544-2_{3001..3290}	n383210|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jcf.2||2.2437500|-0.2154753	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383210|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jcf.2||2.2437500|-0.2154753	chr17	 61937375	 61937664	+	NA	NA	NA	NA	CSH2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr17:61949372-61951089"	NA	inter
CUST_49941_PI429285431	3.021057	A	2.6616561	P	1.28289304702484	0	lncRNA	53691-1_{1..475}	hg19_lincRNAsTranscripts_TCONS_l2_00026861 range=chr7:119781093-119783079 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026861 range=chr7:119781093-119783079 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	119781093	119781567	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15708_PI429285431	1.6249048	A	2.0668979	A	0.736116951713659	0	lncRNA	17396-1_{1..984}	lnc-GBE1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GBE1-5:2	chr3	 80818910	 80819893	-	lnc-GBE1-5	lnc-GBE1-5:2	XLOC_003167	linc-ROBO1-3	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00"	NA	inter
CUST_7869_PI429285431	2.4708824	A	2.4829128	A	0.991695833826523	0	lncRNA	9491-1_{1..1529}	lnc-C21orf58-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C21orf58-1:1	chr21	 47877997	 47879525	-	lnc-C21orf58-1	lnc-C21orf58-1:1	ENSG00000245754	AP000337.1	DIP2A	NA	chr21:47878862-47888593	inter
CUST_46761_PI429285431	13.15973	P	12.895764	P	1.20077512847933	0	lncRNA	50911-1_{1..1158}	"gi|343962628|ref|NR_045027.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 30, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|343962628|ref|NR_045027.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 30, non-coding RNA"	Chr17	 16342301	 16343458	+	125144	NR_045027.1	NA	NA	NA	NA	NA	inter
CUST_29468_PI429285431	6.9995046	P	6.3181667	P	1.6036262072194	0	lncRNA	31226-1_{1..384}	n332883|AF086024|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066903|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066903|-1.1343000|-0.4716754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332883|AF086024|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066903|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066903|-1.1343000|-0.4716754	chr11	110100899	110101282	-	NA	NA	NA	NA	RDX	NA	chr11:110100166-110111283	inner
LNCA_21_P0013018	0.90856147	A	0.9012672	A	1.00506880583481	0	lncRNA	TCONS_l2_00024063	NA	NA	NA	NA	XLOC_l2_012418	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012418), lincRNA [TCONS_l2_00024063]"	chr6:17131581-17131640	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_l2_00024063	TCONS_l2_00024063	chr6	 17131581	 17131640	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22827_PI429285431	8.009136	P	7.322168	P	1.60989656619771	0	lncRNA	24407-1_{1..337}	lnc-LIFR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIFR-1:1	chr5	 38468341	 38468677	-	lnc-LIFR-1	lnc-LIFR-1:1	ENSG00000251257.1	CTD-2263F21.1	LIFR	NA	chr5:38475065-38478441	inter
CUST_29392_PI429285431	0.92384964	A	0.9212555	A	1.00179973841563	0	lncRNA	31144-1_{1..1539}	n332695|AF007190|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061895|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061895|-0.7582590|-0.2643187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332695|AF007190|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061895|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061895|-0.7582590|-0.2643187	NA	NA	     1538	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16794_PI429285431	2.3601255	A	1.9388806	A	1.33908254928506	0	lncRNA	18502-1_{1..674}	lnc-C15orf2-9:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-9:8	chr15	 24523358	 24524031	+	lnc-C15orf2-9	lnc-C15orf2-9:8	XLOC_011174	linc-C15orf2-8	NA	NA	NA	inter
CUST_13210_PI429285431	5.6808825	P	5.4394803	P	1.18214106277331	0	lncRNA	14838-1_{1..1529}	lnc-TOX3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TOX3-3:1	chr16	 52417536	 52419064	-	lnc-TOX3-3	lnc-TOX3-3:1	XLOC_011942	linc-SALL1-4	NA	NA	NA	inter
CUST_11104_PI429285431	2.7430158	P	3.7677329	P	0.491506670023838	0	lncRNA	12659-1_{1..272}	lnc-CHRM4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHRM4-1:2	chr11	 46292116	 46292387	-	lnc-CHRM4-1	lnc-CHRM4-1:2	XLOC_009437	linc-PHF21A-2	CREB3L1	NA	chr11:46299228-46302165	inter
CUST_36193_PI429285431	4.1620812	P	4.517932	P	0.781408687373099	0	lncRNA	37455-1_{1..3000}	n344744|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_293|NULL|-1.3219500|-0.2905813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344744|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_293|NULL|-1.3219500|-0.2905813	chr13	109882818	109885817	-	NA	NA	NA	NA	NA	"hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40"	NA	inter
CUST_31995_PI429285431	6.1504097	P	6.112178	P	1.02685444756299	0	lncRNA	33717-1_{1..1972}	n338554|AK095163|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|959|NULL|-1.0407000|-0.3262904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338554|AK095163|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|959|NULL|-1.0407000|-0.3262904	chr1	231464487	231466458	-	NA	NA	NA	NA	EXOC8	"hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50chr1:231468482-231473578"	NA	inter
CUST_27394_PI429285431	1.0325158	A	1.172662	A	0.907427193693783	0	lncRNA	28958-1_{1..537}	n324558|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043560|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043560|0.5915330|-0.2754426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324558|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043560|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043560|0.5915330|-0.2754426	chr6	 28724041	 28724577	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00"	NA	inter
CUST_48988_PI429285431	0.9027349	A	1.294393	A	0.762253037843137	0	lncRNA	52822-1_{1..1555}	hg19_lincRNAsTranscripts_TCONS_l2_00019099 range=chr3:195722897-195755017 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019099 range=chr3:195722897-195755017 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	195722897	195724451	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34069_PI429285431	1.3944314	A	0.95089513	A	1.35993365439725	0	lncRNA	35598-1_{1..560}	n340892|Y10202|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3357|NULL|-1.1737100|-0.3001058	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340892|Y10202|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3357|NULL|-1.1737100|-0.3001058	chr6	 25593014	 25593573	-	NA	NA	NA	NA	LRRC16A	NA	chr6:25583014-25603574	inner
CUST_47217_PI429285431	11.759742	P	12.26855	P	0.702802875879543	0	lncRNA	51292-1_{1..1457}	"gi|385862239|ref|NR_047675.1| Homo sapiens chromosome 20 open reading frame 27 (C20orf27), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385862239|ref|NR_047675.1| Homo sapiens chromosome 20 open reading frame 27 (C20orf27), transcript variant 4, non-coding RNA"	Chr20	  3734146	  3735602	-	54976	NR_047675.1	NA	NA	NA	NA	NA	inter
CUST_30098_PI429285431	3.2914178	P	3.7248237	P	0.740511527935473	0	lncRNA	31870-1_{1..517}	n334636|U90309|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000222170|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000222170|3.3746600|-0.0282718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334636|U90309|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000222170|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000222170|3.3746600|-0.0282718	chr16	 54966409	 54966925	+	NA	NA	NA	NA	IRX5	NA	chr16:54965111-54968397	inner
CUST_40510_PI429285431	8.324662	P	8.500089	P	0.885505393876002	0	lncRNA	41275-1_{1..1721}	n409503|NR_033888|lncRNA|Homosapiens||RefGeneNoncode|NR_033888||0.5976170|-0.2322733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409503|NR_033888|lncRNA|Homosapiens||RefGeneNoncode|NR_033888||0.5976170|-0.2322733	chr19	 43715942	 43717662	-	NA	NA	NA	NA	PSG9	NA	chr19:43724140-43762798	inter
CUST_51600_PI429285431	5.6694794	P	4.946414	P	1.65068564392303	0	lncRNA	55166-1_{1..2402}	hg19_lincRNAsTranscripts_TCONS_l2_00010641 range=chr17:25751726-25758628 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010641 range=chr17:25751726-25758628 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 25751726	 25754127	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35384_PI429285431	4.8068385	P	4.7857785	P	1.01470474608739	0	lncRNA	36792-1_{1..2402}	n342433|AK124101|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4926|NULL|-0.9072940|-0.3870257	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342433|AK124101|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4926|NULL|-0.9072940|-0.3870257	chr2	 96602558	 96604959	-	NA	NA	NA	NA	LOC400986	NA	chr2:96592558-96614956	inter
CUST_48699_PI429285431	3.789583	P	3.875061	P	0.942472220184272	0	lncRNA	52540-1_{1..810}	hg19_lincRNAsTranscripts_TCONS_l2_00014826 range=chr2:114297651-114300537 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014826 range=chr2:114297651-114300537 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	114297651	114298460	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11204_PI429285431	2.9922876	P	2.4927843	A	1.4137267519591	0	lncRNA	12762-1_{1..221}	lnc-ASF1A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASF1A-2:1	chr6	119738759	119738979	+	lnc-ASF1A-2	lnc-ASF1A-2:1	XLOC_005448	linc-GJA1-3	NA	NA	NA	inter
CUST_38980_PI429285431	0.9054501	A	2.2488072	A	0.394102525570747	0	lncRNA	39964-1_{1..425}	n385216|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ube.1||-0.3257650|-0.3211923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385216|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ube.1||-0.3257650|-0.3211923	chr7	 74233342	 74233766	-	NA	NA	NA	NA	GTF2IRD2	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30chr7:74223342-74243767"	NA	inner
CUST_28731_PI429285431	0.8971557	A	0.9021704	A	0.996530108868218	0	lncRNA	30431-1_{1..2321}	n326124|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046435|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046435|-1.0273000|-0.3392927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326124|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046435|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046435|-1.0273000|-0.3392927	chr10	  2198525	  2200845	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38089_PI429285431	0.9071994	A	3.2390716	P	0.198626194389174	0	lncRNA	39165-1_{1..1625}	n381084|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001bhj.3||1.0231900|-0.1452564	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n381084|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001bhj.3||1.0231900|-0.1452564	chr1	 23953225	 23954849	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60"	NA	inter
CUST_853_PI429285431	0.8972792	A	0.90309256	A	0.995978593504785	0	lncRNA	847-1_{1..549}	"transcript_id ""ENST00000420187.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420187.1"" | genecode_v17"	chr2	 40973627	 40974175	+	ENSG00000233128.1	ENST00000420187.1	AC007317.1	AC007317.1-001	NA	NA	NA	inter
CUST_14282_PI429285431	0.9527609	A	1.3794552	A	0.743964506945064	0	lncRNA	15941-1_{1..500}	lnc-FABP5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FABP5-2:2	chr8	 82074860	 82075359	+	lnc-FABP5-2	lnc-FABP5-2:2	XLOC_006858	linc-FABP5-1	NA	NA	NA	inter
CUST_43447_PI429285431	5.883592	P	5.963497	P	0.946119945709831	0	lncRNA	48254-1_{1..1740}	"gi|210032118|ref|NR_024270.1| Homo sapiens uncharacterized LOC400752 (LOC400752), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|210032118|ref|NR_024270.1| Homo sapiens uncharacterized LOC400752 (LOC400752), non-coding RNA"	Chr1	 45769582	 45771321	+	400752	NR_024270.1	NA	NA	NA	NA	NA	inter
CUST_31547_PI429285431	10.7746105	P	10.458889	P	1.24463394619881	0	lncRNA	33306-1_{1..1903}	n338037|AK054989|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|424|NULL|-0.2729750|-0.2726875	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338037|AK054989|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|424|NULL|-0.2729750|-0.2726875	chr22	 33814787	 33816689	-	NA	NA	NA	NA	LARGE	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.84chr22:33804787-33826593"	NA	inner
CUST_3998_PI429285431	0.90735316	A	0.9205886	A	0.990867845814537	0	lncRNA	3958-1_{1..563}	"transcript_id ""ENST00000564469.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564469.1"" | genecode_v17"	chr11	 68383260	 68383822	-	ENSG00000260808.1	ENST00000564469.1	CTD-2007L18.5	CTD-2007L18.5-002	PPP6R3	NA	chr11:68373260-68382802	inter
CUST_51718_PI429285431	1.820815	A	1.2899053	A	1.44483996084018	0	lncRNA	55275-1_{1..1056}	hg19_lincRNAsTranscripts_TCONS_l2_00011973 range=chr18:11625976-11639984 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011973 range=chr18:11625976-11639984 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 11625976	 11627031	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8240_PI429285431	1.0423366	A	1.2350756	A	0.874943037770949	0	lncRNA	9830-1_{1..1680}	lnc-PWP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PWP1-1:2	chr12	108153549	108155228	+	lnc-PWP1-1	lnc-PWP1-1:2	ENSG00000247270	ENSG00000258136.1	PRDM4	"hg19_refFlat_PRDM4:range=chr12:108127987-1081542925'pad=0,hg19_refFlat_PRDM4:range=chr12:108127987-1081542925'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60chr12:108143549-108154914"	NA	inner
CUST_17243_PI429285431	1.2951114	A	0.9408643	A	1.2783182905518	0	lncRNA	18961-1_{1..205}	lnc-ZFHX4-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFHX4-3:3	chr8	 78362892	 78363096	+	lnc-ZFHX4-3	lnc-ZFHX4-3:3	XLOC_006852	linc-PKIA-2	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	inter
CUST_24321_PI429285431	9.708185	P	9.399355	P	1.23870272662239	0	lncRNA	25874-1_{1..608}	lnc-CLDN6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CLDN6-2:1	chr16	  3054862	  3055469	-	lnc-CLDN6-2	lnc-CLDN6-2:1	ENSG00000262362.1	LA16c-380H5.2	CLDN9	NA	chr16:3062457-3064506	inter
CUST_11680_PI429285431	0.891819	A	0.89829236	A	0.995523060273119	0	lncRNA	13258-1_{1..2116}	lnc-ISCU-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ISCU-1:3	chr12	109034650	109036765	+	lnc-ISCU-1	lnc-ISCU-1:3	XLOC_009876	linc-DAO-1	CORO1C	NA	chr12:109038885-109046526	inter
CUST_30462_PI429285431	4.049765	P	3.8693056	P	1.13324468900994	0	lncRNA	32242-1_{1..798}	n335605|CR597503|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000276698|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000276698|-1.1912900|-0.3498455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335605|CR597503|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000276698|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000276698|-1.1912900|-0.3498455	chr12	 56984915	 56985712	+	NA	NA	NA	NA	BAZ2A	NA	chr12:56989380-56995713	inner
CUST_29894_PI429285431	1.3170228	A	2.0853162	A	0.587111572946588	0	lncRNA	31657-1_{1..282}	n333969|M14191|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194308_02|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194308_02|-1.1745800|-0.3977165	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333969|M14191|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194308_02|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194308_02|-1.1745800|-0.3977165	chr6	  3824986	  3825267	-	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
CUST_39967_PI429285431	1.511402	A	0.8970914	A	1.53082630826199	0	lncRNA	40838-1_{1..3000}	n407031|NR_024527|lncRNA|Homosapiens||RefGeneNoncode|NR_024527||2.2562400|-0.1689213	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407031|NR_024527|lncRNA|Homosapiens||RefGeneNoncode|NR_024527||2.2562400|-0.1689213	chr11	118004091	118007090	-	NA	NA	NA	NA	SCN4B	NA	chr11:118004092-118023630	inter
CUST_707_PI429285431	0.8965031	A	0.90053797	A	0.997207148521939	0	lncRNA	700-1_{1..1055}	"transcript_id ""ENST00000588330.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588330.1"" | genecode_v17"	chr2	  6775966	  6777020	-	ENSG00000236172.2	ENST00000588330.1	AC097517.2	AC097517.2-023	NA	NA	NA	inter
CUST_47734_PI429285431	1.8132224	A	1.6538591	A	1.11679415809452	0	lncRNA	51686-3_{6001..6599}	"gi|385137099|ref|NR_047637.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 67, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137099|ref|NR_047637.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 67, non-coding RNA"	ChrY	 15366259	 15366857	-	7404	NR_047637.1	NA	NA	NA	NA	NA	inter
CUST_22951_PI429285431	1.367607	A	2.4168732	A	0.483213879720548	0	lncRNA	24527-1_{1..440}	lnc-STX3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STX3-2:1	chr11	 59406793	 59407232	+	lnc-STX3-2	lnc-STX3-2:1	ENSG00000255139.1	AP000442.1	PATL1	"hg19_refFlat_PATL1:range=chr11:59405863-594363685'pad=0,hg19_refFlat_PATL1:range=chr11:59405863-594363685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80chr11:59404189-59417015"	NA	inner
CUST_47210_PI429285431	3.5789149	P	3.953434	P	0.771362491569314	0	lncRNA	51285-1_{1..1689}	"gi|315139022|ref|NR_037661.1| Homo sapiens FKBP1A-SDCBP2 readthrough (non-protein coding) (FKBP1A-SDCBP2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315139022|ref|NR_037661.1| Homo sapiens FKBP1A-SDCBP2 readthrough (non-protein coding) (FKBP1A-SDCBP2), non-coding RNA"	Chr20	  1290553	  1292241	-	100528031	NR_037661.1	NA	NA	NA	NA	NA	inter
CUST_12671_PI429285431	0.88634515	A	0.88680446	A	0.999681681242667	0	lncRNA	14287-2_{3001..3463}	lnc-SOX11-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SOX11-3:9	chr2	  6128557	  6129019	+	lnc-SOX11-3	lnc-SOX11-3:9	XLOC_001327	linc-RSAD2-2	NA	NA	NA	inter
CUST_43562_PI429285431	1.3580393	A	0.89343095	A	1.37994268799336	0	lncRNA	48336-1_{1..2302}	"gi|310118638|ref|XR_110492.1| PREDICTED: Homo sapiens uncharacterized LOC100506459 (LOC100506459), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310118638|ref|XR_110492.1| PREDICTED: Homo sapiens uncharacterized LOC100506459 (LOC100506459), misc_RNA"	NA	NA	NA	NA	NA	XR_110492.1	NA	NA	NA	NA	NA	Unknown
CUST_24065_PI429285431	1.1812643	A	1.3396014	A	0.896057302433766	0	lncRNA	25615-1_{1..561}	lnc-MAP6D1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP6D1-1:1	chr3	183526518	183527078	-	lnc-MAP6D1-1	lnc-MAP6D1-1:1	ENSG00000233885.1	YEATS2-AS1	YEATS2	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_YEATS2:range=chr3:183432951-1835283715'pad=0,hg19_refFlat_YEATS2:range=chr3:183432951-1835283715'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80chr3:183516518-183530413"	NA	inner
LNCA_21_P0010139	5.7698164	P	5.8411145	P	0.951781224312937	0	lncRNA	ENST00000430391	NA	NA	NA	NA	XLOC_013864	NA	ENST00000430391	NA	NA	"BROAD Institute lincRNA (XLOC_013864), lincRNA [TCONS_00028793]"	chr21:16319355-16319414	hs|21q11.2	Agilent_HUMAN_G3V2	ENST00000430391	ENST00000430391	chr21	 16319355	 16319414	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44603_PI429285431	0.8979664	A	1.4384273	A	0.687551220935387	0	lncRNA	49179-1_{1..1600}	"gi|310119625|ref|XR_110574.1| PREDICTED: Homo sapiens uncharacterized LOC100130172 (LOC100130172), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310119625|ref|XR_110574.1| PREDICTED: Homo sapiens uncharacterized LOC100130172 (LOC100130172), misc_RNA"	NA	NA	NA	NA	NA	XR_110574.1	NA	NA	NA	NA	NA	Unknown
CUST_10926_PI429285431	2.8651314	P	2.69717	A	1.12346984365327	0	lncRNA	12467-1_{1..2437}	lnc-RP11-295D22.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-295D22.1.1-2:1	chr9	122132986	122135422	+	lnc-RP11-295D22.1.1-2	lnc-RP11-295D22.1.1-2:1	XLOC_007543	linc-CEP110-8	DBC1	NA	chr9:122122986-122131739	inter
CUST_52145_PI429285431	4.4401026	P	4.4541774	P	0.990291526552063	0	lncRNA	55669-1_{1..533}	hg19_lincRNAsTranscripts_TCONS_l2_00017906 range=chr22:21389545-21399379 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017906 range=chr22:21389545-21399379 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 21389545	 21390077	-	NA	NA	NA	NA	P2RX6	NA	chr22:21379545-21382302	inter
LNCA_21_P0011904	0.8945303	A	0.8910043	A	1.00244702605164	0	lncRNA	TCONS_l2_00014417	NA	NA	NA	NA	XLOC_l2_007884	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007884), lincRNA [TCONS_l2_00014417]"	chr2:8718901-8718842	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_l2_00014417	TCONS_l2_00014417	chr2	  8718842	  8718901	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7323_PI429285431	3.8507686	P	4.083596	P	0.850965530553058	0	lncRNA	8601-1_{1..322}	"transcript_id ""ENST00000577319.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577319.1"" | genecode_v17"	chr17	  4786270	  4786591	+	ENSG00000264113.1	ENST00000577319.1	RN7SL784P	RN7SL784P-201	MINK1	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30chr17:4776270-4796591"	NA	inner
CUST_23649_PI429285431	4.2374268	P	4.6323395	P	0.760535396555035	0	lncRNA	25214-1_{1..422}	lnc-AP000867.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP000867.1-2:1	chr11	 71421533	 71421954	-	lnc-AP000867.1-2	lnc-AP000867.1-2:1	ENSG00000254504.1	RP11-167J8.2	FAM86C1	NA	chr11:71411533-71431627	inter
CUST_22623_PI429285431	3.1679688	P	3.2513862	P	0.943819314187086	0	lncRNA	24209-1_{1..786}	lnc-TMEM234-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM234-1:1	chr1	 32672214	 32672999	-	lnc-TMEM234-1	lnc-TMEM234-1:1	ENSG00000224066.1	RP4-622L5.7	TMEM234	"hg19_refFlat_IQCC:range=chr1:32671283-326736835'pad=0,hg19_refFlat_IQCC:range=chr1:32671283-326736835'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20chr1:32681798-32682415"	NA	inner
CUST_51825_PI429285431	3.406785	A	3.6011493	P	0.873957906359493	0	lncRNA	55378-1_{1..204}	hg19_lincRNAsTranscripts_TCONS_l2_00013067 range=chr19:36801802-36812252 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013067 range=chr19:36801802-36812252 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 36801802	 36802005	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006354	0.8945813	A	1.4806162	A	0.666171297110092	0	lncRNA	TCONS_00016624	NA	NA	NA	NA	XLOC_007422	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007422), lincRNA [TCONS_00016624]"	chr9:85070102-85070161	hs|9q21.32	Agilent_HUMAN_G3V2	TCONS_00016624	TCONS_00016624	chr9	 85070102	 85070161	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3312985	2.1449265	A	2.7745	A	0.646367470929199	0	lncRNA	XR_109694	XR_109694	XR_109694	   200298	Hs.517397	C22orf37	chromosome 22 open reading frame 37	NA	THC2475130	NA	"PREDICTED: Homo sapiens chromosome 22 open reading frame 37 (C22orf37), miscRNA [XR_109694]"	chr22:18260850-18260909	hs|22q11.21	Agilent_HUMAN_G3V2	XR_109694	XR_109694	chr22	 18260850	 18260909	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14205_PI429285431	3.9697018	P	3.5833142	P	1.30711638163921	0	lncRNA	15857-1_{1..620}	lnc-OSMR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-OSMR-1:1	chr5	 39524353	 39524972	+	lnc-OSMR-1	lnc-OSMR-1:1	XLOC_004350	linc-PTGER4-4	NA	NA	NA	inter
CUST_2209_PI429285431	3.7949028	P	4.0507965	P	0.837468191185649	0	lncRNA	2201-1_{1..722}	"transcript_id ""ENST00000523413.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523413.2"" | genecode_v17"	chr5	 77238581	 77239302	-	ENSG00000253572.2	ENST00000523413.2	RP11-107N7.1	RP11-107N7.1-001	NA	NA	NA	inter
CUST_35653_PI429285431	2.6275275	A	2.5663228	A	1.04333661916876	0	lncRNA	37070-1_{1..602}	n342803|AJ237589|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5306|NULL|4.5323400|-0.1020596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342803|AJ237589|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5306|NULL|4.5323400|-0.1020596	chr7	 35271115	 35271716	-	NA	NA	NA	NA	TBX20	NA	chr7:35261115-35293711	inner
CUST_16995_PI429285431	1.7020419	A	1.9625884	A	0.834771643911164	0	lncRNA	18705-1_{1..244}	lnc-FSCB-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FSCB-4:1	chr14	 42541982	 42542225	-	lnc-FSCB-4	lnc-FSCB-4:1	XLOC_011005	linc-FBXO33-5	NA	NA	NA	inter
CUST_24162_PI429285431	0.9139453	A	0.91725004	A	0.997711950371708	0	lncRNA	25713-1_{1..419}	lnc-SRY-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRY-2:2	chrY	  2870579	  2870997	-	lnc-SRY-2	lnc-SRY-2:2	ENSG00000233070.1	ZFY-AS1	NA	NA	NA	inter
CUST_31638_PI429285431	2.6125236	A	2.4375439	A	1.12894851938646	0	lncRNA	33390-1_{1..2520}	n338159|AL109706|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|548|NULL|0.2694850|-0.2359695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338159|AL109706|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|548|NULL|0.2694850|-0.2359695	chr15	 99571772	 99574291	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5043_PI429285431	2.783161	A	4.9608154	P	0.221034825685031	0	lncRNA	4984-1_{1..401}	"transcript_id ""ENST00000556266.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556266.1"" | genecode_v17"	chr14	102023641	102024041	-	ENSG00000258498.1	ENST00000556266.1	DIO3OS	DIO3OS-016	DIO3	NA	chr14:102027688-102029789	inter
CUST_47592_PI429285431	10.518341	P	10.613229	P	0.936344935396406	0	lncRNA	51595-1_{1..1682}	"gi|403310711|ref|NR_073149.1| Homo sapiens trophinin (TRO), transcript variant 10, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|403310711|ref|NR_073149.1| Homo sapiens trophinin (TRO), transcript variant 10, non-coding RNA"	ChrX	 54946996	 54948677	+	7216	NR_073149.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0012044	0.9011681	A	1.1863236	A	0.820653150446955	0	lncRNA	THC2689015	NA	NA	NA	NA	XLOC_l2_007783	NA	NA	THC2689015	NA	"BROAD Institute lincRNA (XLOC_l2_007783), lincRNA [TCONS_l2_00015610]"	chr2:223186121-223186180	hs|2q36.1	Agilent_HUMAN_G3V2	THC2689015	THC2689015	chr2	223186121	223186180	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2136_PI429285431	0.9255011	A	0.88651884	A	1.02738880608574	0	lncRNA	2127-1_{1..1941}	"transcript_id ""ENST00000510986.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000510986.2"" | genecode_v17"	chr5	 37873527	 37875467	+	ENSG00000248587.2	ENST00000510986.2	GDNF-AS1	GDNF-AS1-001	NA	NA	NA	inter
CUST_17998_PI429285431	0.91710293	A	0.92146564	A	0.996980567546926	0	lncRNA	19732-1_{1..604}	lnc-PDGFD-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDGFD-1:2	chr11	103718672	103719275	-	lnc-PDGFD-1	lnc-PDGFD-1:2	XLOC_009537	linc-DCUN1D5-3	NA	NA	NA	inter
CUST_32956_PI429285431	1.2867442	A	0.90752786	A	1.30063516927221	0	lncRNA	34575-1_{1..3000}	n339633|AF132204|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2077|NULL|-0.0346050|-0.4389568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339633|AF132204|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2077|NULL|-0.0346050|-0.4389568	chr3	144160697	144163696	-	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-18.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.22;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00"	NA	inter
CUST_8267_PI429285431	2.2749643	A	2.864987	A	0.664332454066218	0	lncRNA	9854-1_{1..3000}	lnc-TIMP3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMP3-2:1	chr22	 33216342	 33219341	+	lnc-TIMP3-2	lnc-TIMP3-2:1	ENSG00000251658	ENST00000514117	SYN3	"hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60chr22:33206342-33226563"	NA	inner
CUST_21877_PI429285431	2.2531524	A	2.1432927	A	1.07912328822704	0	lncRNA	23487-1_{1..904}	lnc-CLCNKB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLCNKB-1:1	chr1	 16483466	 16484369	+	lnc-CLCNKB-1	lnc-CLCNKB-1:1	ENSG00000227959.1	RP11-276H7.2	EPHA2	NA	chr1:16473466-16482582	inter
CUST_19604_PI429285431	0.9123447	A	0.8975009	A	1.01034205124553	0	lncRNA	21260-1_{1..2843}	lnc-STIM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STIM1-1:1	chr11	  3841686	  3844528	+	lnc-STIM1-1	lnc-STIM1-1:1	ENSG00000250404.1	AC090587.2	PGAP2	"hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.51;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chr11:3831686-3847582"	NA	inner
CUST_7726_PI429285431	3.5764346	P	3.57219	P	1.00294646484221	0	lncRNA	9357-1_{1..291}	lnc-C8orf56-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C8orf56-1:8	chr8	104215026	104215316	-	lnc-C8orf56-1	lnc-C8orf56-1:8	ENSG00000247081	RP11-318M2.2	BAALC	NA	chr8:104205026-104225098	inner
LNCA_21_P0013367	0.9072734	A	0.9011146	A	1.00427807982348	0	lncRNA	ENST00000443874	NA	NA	NA	NA	XLOC_l2_013282	NA	ENST00000443874	THC2667629	NA	"BROAD Institute lincRNA (XLOC_l2_013282), lincRNA [TCONS_l2_00027053]"	chr7:12565492-12568548	hs|7p21.3	Agilent_HUMAN_G3V2	ENST00000443874	ENST00000443874	chr7	 12565492	 12568548	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44726_PI429285431	9.501508	P	9.7296715	P	0.853720957084754	0	lncRNA	49280-1_{1..616}	"gi|311771781|ref|NR_037171.1| Homo sapiens uncharacterized LOC100507547 (LOC100507547), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|311771781|ref|NR_037171.1| Homo sapiens uncharacterized LOC100507547 (LOC100507547), transcript variant 3, non-coding RNA"	Chr6	 32120579	 32121194	-	100507547	NR_037171.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0012285	8.034414	P	8.129593	P	0.936156088210903	0	lncRNA	TCONS_l2_00017899	NA	NA	NA	NA	XLOC_l2_009468	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009468), lincRNA [TCONS_l2_00017899]"	chr22:20958989-20958930	hs|22q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00017899	TCONS_l2_00017899	chr22	 20958930	 20958989	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9818_PI429285431	0.8979656	A	0.8913434	A	1.0046007101774	0	lncRNA	11336-1_{1..819}	lnc-MYF5-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYF5-1:4	chr12	 81163383	 81164201	+	lnc-MYF5-1	lnc-MYF5-1:4	XLOC_009818	linc-ACSS3	NA	NA	NA	inter
CUST_1035_PI429285431	5.968836	P	5.8983026	P	1.05010486157049	0	lncRNA	1025-1_{1..1232}	"transcript_id ""ENST00000432583.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432583.2"" | genecode_v17"	chr2	114334959	114336190	+	ENSG00000226516.3	ENST00000432583.2	FAM138B	FAM138B-002	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50"	NA	inter
CUST_32915_PI429285431	4.033301	P	4.017549	P	1.01097827824105	0	lncRNA	34539-1_{1..1924}	n339587|BC041946|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2031|NULL|-0.7607770|-0.2725737	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339587|BC041946|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2031|NULL|-0.7607770|-0.2725737	chr20	 17454132	 17456055	+	NA	NA	NA	NA	PCSK2	NA	chr20:17444132-17465223	inner
CUST_2149_PI429285431	1.0376861	A	0.9195306	A	1.08534634896799	0	lncRNA	2140-1_{1..591}	"transcript_id ""ENST00000511712.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511712.1"" | genecode_v17"	chr5	 44753051	 44753641	+	ENSG00000248779.1	ENST00000511712.1	RP11-53O19.2	RP11-53O19.2-001	NA	NA	NA	inter
LNCA_21_P0012428	0.90900505	A	0.90234625	A	1.00462619640377	0	lncRNA	TCONS_l2_00019099	NA	NA	NA	NA	XLOC_l2_010071	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010071), lincRNA [TCONS_l2_00019099]"	chr3:195754958-195755017	hs|3q29	Agilent_HUMAN_G3V2	TCONS_l2_00019099	TCONS_l2_00019099	chr3	195754958	195755017	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25678_PI429285431	2.3547325	A	2.6314478	A	0.82546828952943	0	lncRNA	27207-1_{1..689}	lnc-ZNF624-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZNF624-1:1	chr17	 16462273	 16462961	-	lnc-ZNF624-1	lnc-ZNF624-1:1	ENSG00000266803.1	RP1-77H15.1	ZNF287	NA	chr17:16453631-16472520	inner
CUST_32359_PI429285431	0.9039728	A	0.8927463	A	1.00781197228986	0	lncRNA	34037-1_{1..680}	n338942|BC033566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1370|NULL|-1.1000800|-0.3304308	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338942|BC033566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1370|NULL|-1.1000800|-0.3304308	chr2	115586008	115586687	-	NA	NA	NA	NA	DPP10	NA	chr2:115576008-115601125	inner
LNCA_21_P0012888	2.110003	A	2.271004	A	0.894404281828585	0	lncRNA	ENST00000506059	NA	NA	NA	NA	XLOC_l2_011922	NA	ENST00000506059	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011922), lincRNA [TCONS_l2_00023650]"	chr5:4775735-4775676	hs|5p15.32	Agilent_HUMAN_G3V2	ENST00000506059	ENST00000506059	chr5	  4775676	  4775735	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013754	0.9084601	A	0.90128535	A	1.00498554440776	0	lncRNA	TCONS_l2_00030150	NA	NA	NA	NA	XLOC_l2_015453	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015453), lincRNA [TCONS_l2_00030150]"	chrX:13348150-13348209	hs|Xp22.2	Agilent_HUMAN_G3V2	TCONS_l2_00030150	TCONS_l2_00030150	chrX	 13348150	 13348209	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39123_PI429285431	4.7383747	P	4.5873637	P	1.11034729957147	0	lncRNA	40099-1_{1..630}	n385707|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bzf.2||-0.9885370|-0.3727253	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385707|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bzf.2||-0.9885370|-0.3727253	chr9	132869966	132870595	+	NA	NA	NA	NA	GPR107	NA	chr9:132859966-132880596	inner
CUST_33164_PI429285431	0.9081956	A	0.8943417	A	1.00964904646888	0	lncRNA	34758-1_{1..1806}	n339855|AL049328|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2303|NULL|-0.7302770|-0.3040791	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n339855|AL049328|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2303|NULL|-0.7302770|-0.3040791	chr18	 43226117	 43227922	+	NA	NA	NA	NA	SLC14A2	NA	chr18:43216117-43237902	inner
CUST_34784_PI429285431	6.4759984	P	6.3480244	P	1.09275804542738	0	lncRNA	36221-1_{1..2035}	n341691|AK055947|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4162|NULL|-0.7211920|-0.1804076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341691|AK055947|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4162|NULL|-0.7211920|-0.1804076	chr9	 37915895	 37917929	-	NA	NA	NA	NA	SHB	NA	chr9:37915895-37927930	inner
CUST_10990_PI429285431	0.9029418	A	0.9183589	A	0.989370576464251	0	lncRNA	12534-1_{1..764}	lnc-TNFRSF13B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFRSF13B-3:1	chr17	 16944523	 16945286	-	lnc-TNFRSF13B-3	lnc-TNFRSF13B-3:1	XLOC_012406	linc-TNFRSF13B-2	MPRIP	NA	chr17:16946074-16954627	inter
CUST_36303_PI429285431	1.5259244	A	1.2588222	A	1.20338827057422	0	lncRNA	37535-1_{1..2064}	n344830|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_379|NULL|-1.3455000|-0.3205328	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344830|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_379|NULL|-1.3455000|-0.3205328	chr5	 77288634	 77290697	-	NA	NA	NA	NA	AP3B1	NA	chr5:77298150-77305669	inter
LNCA_21_P0006988	1.8328769	A	2.819695	A	0.504589433299527	0	lncRNA	TCONS_00018492	NA	NA	NA	NA	XLOC_008792	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008792), lincRNA [TCONS_00018492]"	chr10:44407855-44407796	hs|10q11.21	Agilent_HUMAN_G3V2	TCONS_00018492	TCONS_00018492	chr10	 44407796	 44407855	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25633_PI429285431	0.89830923	A	0.9040868	A	0.996003301786858	0	lncRNA	27163-1_{1..432}	lnc-C2orf84-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf84-1:2	chr2	 24444189	 24444620	+	lnc-C2orf84-1	lnc-C2orf84-1:2	ENSG00000242628.1	AC009228.1	ITSN2	"hg19_refFlat_ITSN2:range=chr2:24443763-245509515'pad=0,hg19_refFlat_ITSN2:range=chr2:24443763-245509515'pad=0 3'pad=0 strand=- repeatMasking=none,-95.10chr2:24434189-24454385"	NA	inner
CUST_8338_PI429285431	0.88759166	A	1.0672325	A	0.882922773211669	0	lncRNA	9920-1_{1..469}	lnc-GPR39-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GPR39-4:1	chr2	134026488	134026956	+	lnc-GPR39-4	lnc-GPR39-4:1	ENSG00000226953	AC010890.1	NCKAP5	NA	chr2:134016488-134036582	inner
CUST_19359_PI429285431	1.9960489	A	0.92837894	A	2.09604539164305	0	lncRNA	21022-1_{1..919}	lnc-KCNH8-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNH8-3:2	chr3	 18505779	 18506697	+	lnc-KCNH8-3	lnc-KCNH8-3:2	ENSG00000228956.2	AC144521.1	LOC100652784	NA	chr3:18495779-18505831	inter
CUST_29135_PI429285431	4.122379	P	4.32694	P	0.867802712066131	0	lncRNA	30876-1_{1..2835}	n326643|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000011997|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000011997|0.0654871|-0.3375374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326643|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000011997|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000011997|0.0654871|-0.3375374	chr1	 35414565	 35417399	-	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-30.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.93;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10"	NA	inter
CUST_161_PI429285431	3.7071612	P	3.6096246	P	1.06994497218985	0	lncRNA	152-1_{1..384}	"transcript_id ""ENST00000437631.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437631.1"" | genecode_v17"	chr1	 13146777	 13147160	+	ENSG00000233336.1	ENST00000437631.1	RP13-221M14.2	RP13-221M14.2-001	PRAMEF25	NA	chr1:13136777-13145000	inter
CUST_6992_PI429285431	12.649584	P	12.415412	P	1.1762314737951	0	lncRNA	6940-1_{1..551}	"transcript_id ""ENST00000446578.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446578.1"" | genecode_v17"	chr22	 42665774	 42666324	+	ENSG00000182057.4	ENST00000446578.1	Z83851.3	Z83851.3-003	NA	NA	NA	inter
CUST_10852_PI429285431	4.3675194	P	4.1609344	P	1.1539534280502	0	lncRNA	12390-1_{1..466}	lnc-WRNIP1-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRNIP1-2:11	chr6	  2283733	  2284198	+	lnc-WRNIP1-2	lnc-WRNIP1-2:11	XLOC_005126	linc-WRNIP1-3	NA	NA	NA	inter
LNCA_21_P0014530	2.8480978	A	3.3184352	P	0.721795773188787	0	lncRNA	ENST00000554614	XR_110220	XR_110220	NA	Hs.660593	LOC100287558	NA	ENST00000554614	THC2608315	NA	"PREDICTED: Homo sapiens hypothetical LOC100287558 (LOC100287558), miscRNA [XR_110220]"	chr14:73711642-73711583	hs|14q24.2	Agilent_HUMAN_G3V2	ENST00000554614	ENST00000554614	chr14	 73711583	 73711642	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51110_PI429285431	0.89990413	A	1.060429	A	0.894699509148331	0	lncRNA	54747-1_{1..2245}	hg19_lincRNAsTranscripts_TCONS_l2_00007305 range=chr13:101591500-101596786 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007305 range=chr13:101591500-101596786 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	101591500	101593744	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00"	NA	inter
CUST_2245_PI429285431	0.89376974	A	1.5468504	A	0.635920948513575	0	lncRNA	2237-1_{1..555}	"transcript_id ""ENST00000513893.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513893.1"" | genecode_v17"	chr5	 87963160	 87963714	-	ENSG00000245526.3	ENST00000513893.1	LINC00461	LINC00461-006	NA	NA	NA	inter
CUST_34238_PI429285431	1.7343866	A	1.9743228	A	0.846782758630744	0	lncRNA	35745-1_{1..2318}	n341096|AK093898|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3562|NULL|-1.0989700|-0.4914727	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341096|AK093898|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3562|NULL|-1.0989700|-0.4914727	chr11	 92877340	 92879657	-	NA	NA	NA	NA	SLC36A4	NA	chr11:92880850-92889658	inter
CUST_33755_PI429285431	0.9060192	A	1.004864	A	0.933780392284937	0	lncRNA	35310-1_{1..1645}	n340535|CR608789|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2997|NULL|-1.2700200|-0.4178124	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340535|CR608789|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2997|NULL|-1.2700200|-0.4178124	chr5	 80709892	 80711536	-	NA	NA	NA	NA	SSBP2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40chr5:80715672-80721537"	NA	inter
CUST_28475_PI429285431	1.9764197	A	1.9210007	A	1.03916086158146	0	lncRNA	30142-1_{1..979}	n325817|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000277174|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000277174|0.0735803|-0.4938787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325817|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000277174|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000277174|0.0735803|-0.4938787	chr12	  9980444	  9981422	-	NA	NA	NA	NA	KLRF1	NA	chr12:9980077-9997361	inner
LNCA_21_P0009722	5.071072	P	5.054325	P	1.011675771697	0	lncRNA	TCONS_00027052	NA	NA	NA	NA	XLOC_013093	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013093), lincRNA [TCONS_00027052]"	chr19:44700015-44700228	hs|19q13.31	Agilent_HUMAN_G3V2	TCONS_00027052	TCONS_00027052	chr19	 44700015	 44700228	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27028_PI429285431	1.0690951	A	1.0745791	A	0.996205996349832	0	lncRNA	28559-1_{1..902}	n324134|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001042|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001042|-0.9642350|-0.3040176	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324134|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001042|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001042|-0.9642350|-0.3040176	chr9	 33592498	 33593399	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41979_PI429285431	7.2874184	P	7.1673164	P	1.08681169849723	0	lncRNA	43797-1_{1..69}	ENST00000408467 ncrna:miRNA chromosome:GRCh37:5:179225278:179225346:-1 gene:ENSG00000221394 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408467 ncrna:miRNA chromosome:GRCh37:5:179225278:179225346:-1 gene:ENSG00000221394 gene_biotype:miRNA transcript_biotype:miRNA	chr5	179225278	179225346	-	ENSG00000221394	ENST00000408467	NA	NA	SQSTM1	NA	chr5:179233388-179235346	inter
CUST_26531_PI429285431	0.9049414	A	1.2324853	A	0.796891989429193	0	lncRNA	28038-1_{1..521}	lnc-C17orf48-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf48-2:5	chr17	 10641890	 10642410	+	lnc-C17orf48-2	lnc-C17orf48-2:5	ENSG00000263400.1	CTC-297N7.5	TMEM220	"hg19_refFlat_TMEM220:range=chr17:10618770-106331685'pad=0,hg19_refFlat_TMEM220:range=chr17:10618770-106331685'pad=0 3'pad=0 strand=- repeatMasking=none,-99.20chr17:10631890-10633646"	NA	inter
CUST_39892_PI429285431	7.464156	P	7.4453945	P	1.0130894068291	0	lncRNA	40778-1_{1..3000}	n406590|NR_024108|lncRNA|Homosapiens||RefGeneNoncode|NR_024108||10.9022000|-0.1302922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406590|NR_024108|lncRNA|Homosapiens||RefGeneNoncode|NR_024108||10.9022000|-0.1302922	chr21	 45719924	 45722923	+	NA	NA	NA	NA	PFKL	NA	chr21:45719925-45747261	inner
CUST_35573_PI429285431	1.0337673	A	1.444305	A	0.752342919297829	0	lncRNA	36988-1_{1..2616}	n342705|AK024231|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5207|NULL|-0.0596390|-0.2068711	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342705|AK024231|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5207|NULL|-0.0596390|-0.2068711	chr17	 42023508	 42026123	+	NA	NA	NA	NA	PYY	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10chr17:42030106-42037711"	NA	inter
CUST_45109_PI429285431	0.9280628	A	0.9484714	A	0.985953423278833	0	lncRNA	49590-1_{1..1987}	"gi|281485548|ref|NR_033169.1| Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5 (GALNTL5), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|281485548|ref|NR_033169.1| Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5 (GALNTL5), transcript variant 2, non-coding RNA"	Chr7	151653464	151655450	+	168391	NR_033169.1	NA	NA	NA	NA	NA	inter
CUST_1699_PI429285431	0.9058615	A	0.9073873	A	0.998942955097871	0	lncRNA	1683-1_{1..366}	"transcript_id ""ENST00000503938.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503938.1"" | genecode_v17"	chr4	 13547699	 13548064	-	ENSG00000246095.2	ENST00000503938.1	AC006445.8	AC006445.8-002	NKX3-2	NA	chr4:13542454-13546114	inter
CUST_29005_PI429285431	1.0320835	A	1.603149	A	0.673119473552967	0	lncRNA	30729-1_{1..734}	n326489|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001239|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001239|-1.2819600|-0.3785744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326489|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001239|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001239|-1.2819600|-0.3785744	chr1	107162383	107163116	+	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.07;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
CUST_11864_PI429285431	1.3098047	A	1.0461969	A	1.2004770306504	0	lncRNA	13443-1_{1..295}	lnc-NPAT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NPAT-1:1	chr11	107984605	107984899	-	lnc-NPAT-1	lnc-NPAT-1:1	XLOC_009546	linc-SLC35F2	ACAT1	NA	chr11:107992258-107994754	inter
CUST_1068_PI429285431	0.89582825	A	0.8975165	A	0.998830478696144	0	lncRNA	1057-1_{1..357}	"transcript_id ""ENST00000412312.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412312.1"" | genecode_v17"	chr2	129338065	129338421	-	ENSG00000237532.1	ENST00000412312.1	AC012451.1	AC012451.1-001	NA	NA	NA	inter
CUST_50002_PI429285431	7.820285	P	7.930347	P	0.926548242508035	0	lncRNA	53739-1_{1..817}	hg19_lincRNAsTranscripts_TCONS_l2_00027706 range=chr8:32785452-32902432 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027706 range=chr8:32785452-32902432 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 32785452	 32786268	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20142_PI429285431	3.285099	P	3.9096112	P	0.648639056270489	0	lncRNA	21787-1_{1..191}	lnc-SMG1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMG1-1:3	chr16	 19078873	 19079063	-	lnc-SMG1-1	lnc-SMG1-1:3	ENSG00000261465.2	RP11-626G11.5	TMC7	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr16:19068873-19075264"	NA	inner
CUST_37867_PI429285431	5.798874	P	6.4903665	P	0.619212929002044	0	lncRNA	38959-1_{1..1448}	n346402|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1952|NULL|-1.6811300|-0.0833382	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346402|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1952|NULL|-1.6811300|-0.0833382	chr21	 45627530	 45628977	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21136_PI429285431	7.1913815	P	7.480444	P	0.818433724883482	0	lncRNA	22761-1_{1..260}	lnc-FBXO25-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXO25-5:5	chr8	  1054883	  1055142	+	lnc-FBXO25-5	lnc-FBXO25-5:5	ENSG00000237647.4	ERICH1-AS1	NA	NA	NA	inter
CUST_16816_PI429285431	0.88920736	A	1.3916508	A	0.70591019380176	0	lncRNA	18523-1_{1..503}	lnc-JUN-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JUN-6:2	chr1	 59761542	 59762044	-	lnc-JUN-6	lnc-JUN-6:2	XLOC_000852	linc-JUN-3	FGGY	NA	chr1:59762625-59771673	inter
LNCA_21_P0012248	8.722269	P	8.4016695	P	1.24884939013607	0	lncRNA	ENST00000424407	XR_109700	XR_109700	NA	NA	XLOC_l2_009292	NA	ENST00000424407	NP1209300	NA	"PREDICTED: Homo sapiens hypothetical LOC100506454 (LOC100506454), miscRNA [XR_109700]"	chr22:19001920-19001979	hs|22q11.21	Agilent_HUMAN_G3V2	ENST00000424407	ENST00000424407	chr22	 19001920	 19001979	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3771_PI429285431	7.48511	P	7.7572427	P	0.828094489177891	0	lncRNA	3739-1_{1..666}	"transcript_id ""ENST00000416191.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416191.1"" | genecode_v17"	chr10	101190948	101191613	+	ENSG00000224934.1	ENST00000416191.1	RP11-441O15.3	RP11-441O15.3-001	GOT1	NA	chr10:101180948-101190530	inter
CUST_30804_PI429285431	2.1158724	A	2.6512647	A	0.689971033133152	0	lncRNA	32591-1_{1..367}	n336714|Z70715|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327966_17|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327966_17|-1.3036800|-0.5371661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336714|Z70715|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327966_17|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327966_17|-1.3036800|-0.5371661	chr5	 70504654	 70505020	+	NA	NA	NA	NA	LOC100652842	NA	chr5:70511190-70512211	inter
CUST_13027_PI429285431	3.0472069	A	2.8969297	A	1.10978268567113	0	lncRNA	14654-1_{1..3000}	lnc-ARRDC3-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARRDC3-1:10	chr5	 90609455	 90612454	-	lnc-ARRDC3-1	lnc-ARRDC3-1:10	XLOC_004924	linc-LYSMD3-2	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20"	NA	inter
CUST_9560_PI429285431	0.9186402	A	1.4807056	A	0.677331783360441	0	lncRNA	11075-1_{1..726}	lnc-MATN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MATN1-1:1	chr1	 31181113	 31181838	-	lnc-MATN1-1	lnc-MATN1-1:1	XLOC_000768	linc-MECR-5	MATN1	NA	chr1:31184124-31191236	inter
CUST_36310_PI429285431	1.54219	A	0.9058962	A	1.55433103963595	0	lncRNA	37541-1_{1..2018}	n344836|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_385|NULL|-1.3508000|-0.2740612	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344836|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_385|NULL|-1.3508000|-0.2740612	chr5	 95194507	 95196524	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15174_PI429285431	0.9067334	A	0.9201093	A	0.99077138015909	0	lncRNA	16838-1_{1..382}	lnc-RSPO3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RSPO3-1:1	chr6	127198771	127199152	+	lnc-RSPO3-1	lnc-RSPO3-1:1	XLOC_005460	linc-RSPO3	NA	NA	NA	inter
CUST_3492_PI429285431	7.5645437	P	7.4977565	P	1.0473816251142	0	lncRNA	3463-1_{1..483}	"transcript_id ""ENST00000580326.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580326.1"" | genecode_v17"	chr9	 98412444	 98412926	+	ENSG00000228142.2	ENST00000580326.1	RP11-180I4.2	RP11-180I4.2-002	NA	NA	NA	inter
CUST_22341_PI429285431	4.1699553	A	3.8768444	A	1.22527951554839	0	lncRNA	23935-1_{1..877}	lnc-CLK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLK1-1:1	chr2	201676508	201677384	-	lnc-CLK1-1	lnc-CLK1-1:1	ENSG00000230408.3	AC007163.6	BZW1	NA	chr2:201676269-201686893	inner
CUST_49276_PI429285431	6.7134514	P	7.0306582	P	0.802622330307934	0	lncRNA	53095-1_{1..305}	hg19_lincRNAsTranscripts_TCONS_l2_00022134 range=chr5:693675-785669 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022134 range=chr5:693675-785669 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	   693675	   693979	+	NA	NA	NA	NA	TPPP	NA	chr5:683675-693510	inter
CUST_27383_PI429285431	0.91907936	A	1.794235	A	0.54519504674018	0	lncRNA	28945-2_{3001..3994}	n324545|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000076474|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000076474|0.2894160|-0.3241112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324545|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000076474|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000076474|0.2894160|-0.3241112	chr6	 30945737	 30946730	-	NA	NA	NA	NA	MUC21	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50chr6:30932737-30957675"	NA	inner
CUST_11231_PI429285431	2.2889287	A	2.9751923	P	0.621461274653065	0	lncRNA	12789-1_{1..1073}	lnc-NLRP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NLRP3-1:1	chr1	247556644	247557716	+	lnc-NLRP3-1	lnc-NLRP3-1:1	XLOC_000647	linc-NLRP3-2	NA	NA	NA	inter
CUST_13334_PI429285431	3.7502596	P	3.775422	P	0.982709971505166	0	lncRNA	14970-1_{1..737}	lnc-IGFBP7-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-IGFBP7-3:3	chr4	 58471832	 58472568	-	lnc-IGFBP7-3	lnc-IGFBP7-3:3	XLOC_003960	linc-IGFBP7-5	NA	NA	NA	inter
CUST_9205_PI429285431	11.67292	P	12.011715	P	0.790701463482246	0	lncRNA	10717-1_{1..568}	lnc-CA8-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CA8-3:1	chr8	 61429157	 61429724	-	lnc-CA8-3	lnc-CA8-3:1	ENSG00000251396	ENSG00000251396.2	RAB2A	NA	chr8:61429469-61439354	inter
LNCA_21_P0007452	4.554509	P	5.15579	P	0.65916840563907	0	lncRNA	TCONS_00020006	NA	NA	NA	NA	XLOC_009304	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009304), lincRNA [TCONS_00020006]"	chr11:119897902-119898577	hs|11q23.3	Agilent_HUMAN_G3V2	TCONS_00020006	TCONS_00020006	chr11	119897902	119898577	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42190_PI429285431	3.559955	P	4.240665	P	0.623858176759554	0	lncRNA	44257-1_{1..78}	ENST00000584905 ncrna:miRNA chromosome:GRCh37:16:1925658:1925735:-1 gene:ENSG00000265999 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584905 ncrna:miRNA chromosome:GRCh37:16:1925658:1925735:-1 gene:ENSG00000265999 gene_biotype:miRNA transcript_biotype:miRNA	chr16	  1925658	  1925735	-	ENSG00000265999	ENST00000584905	NA	NA	C16orf73	NA	chr16:1915658-1922179	inter
CUST_17458_PI429285431	0.8941336	A	0.90049565	A	0.995599872034165	0	lncRNA	19183-1_{1..541}	lnc-POM121L12-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POM121L12-3:1	chr7	 52493086	 52493626	+	lnc-POM121L12-3	lnc-POM121L12-3:1	XLOC_006099	linc-POM121L12-3	NA	NA	NA	inter
CUST_29302_PI429285431	5.8498588	P	6.4356112	P	0.666301755601151	0	lncRNA	31053-1_{1..641}	n332472|EF589390|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000469209|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000469209|-0.9005340|-0.1231674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332472|EF589390|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000469209|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000469209|-0.9005340|-0.1231674	chr22	 22550381	 22551021	-	NA	NA	NA	NA	ZNF280B	"hg19_refFlat_IGLL1:range=chr22:23915453-239223775'pad=0,hg19_refFlat_IGLL1:range=chr22:23915453-239223775'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_IGLL5:range=chr22:23230234-232378745'pad=0,hg19_refFlat_IGLL5:range=chr22:23230234-232378745'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30;hg19_refFlat_IGLL5:range=chr22:23230340-232378745'pad=0,hg19_refFlat_IGLL5:range=chr22:23230340-232378745'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30;hg19_refFlat_IGLL1:range=chr22:23915724-239223775'pad=0,hg19_refFlat_IGLL1:range=chr22:23915724-239223775'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr22:22804696-22863505"	NA	inter
CUST_18480_PI429285431	1.6795123	A	0.90107703	A	1.71526950260638	0	lncRNA	20200-1_{1..892}	lnc-COLEC10-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COLEC10-1:5	chr8	120255657	120256548	+	lnc-COLEC10-1	lnc-COLEC10-1:5	ENSG00000147676	MAL2	MAL2	NA	chr8:120245657-120257913	inner
CUST_21828_PI429285431	1.3710765	A	1.7252084	A	0.782340252138337	0	lncRNA	23438-1_{1..582}	lnc-TSSK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSSK2-1:1	chr22	 19111859	 19112440	+	lnc-TSSK2-1	lnc-TSSK2-1:1	ENSG00000223461.1	AC004471.9	DGCR2	NA	chr22:19101859-19109967	inter
LNCA_21_P0006687	0.89430594	A	1.2464433	A	0.78342259318741	0	lncRNA	ENST00000416657	NA	NA	NA	NA	XLOC_008534	NA	ENST00000416657	NA	NA	"BROAD Institute lincRNA (XLOC_008534), lincRNA [TCONS_00017846]"	chr10:82094097-82094156	hs|10q23.1	Agilent_HUMAN_G3V2	ENST00000416657	ENST00000416657	chr10	 82094097	 82094156	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32649_PI429285431	1.2313521	A	1.4533088	A	0.857401769681317	0	lncRNA	34303-1_{1..572}	n339274|AF085950|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1706|NULL|-0.9394180|-0.2781603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339274|AF085950|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1706|NULL|-0.9394180|-0.2781603	chr3	 30706994	 30707565	+	NA	NA	NA	NA	TGFBR2	NA	chr3:30696994-30717566	inner
LNCA_21_P0002534	2.0924475	A	2.9943151	P	0.535193463101637	0	lncRNA	TCONS_00004561	NA	NA	NA	NA	XLOC_002471	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002471), lincRNA [TCONS_00004561]"	chr2:206854214-206854155	hs|2q33.3	Agilent_HUMAN_G3V2	TCONS_00004561	TCONS_00004561	chr2	206854155	206854214	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45375_PI429285431	0.8813857	A	0.96652675	A	0.942692365879094	0	lncRNA	49809-1_{1..456}	"gi|310120371|ref|XR_108971.1| PREDICTED: Homo sapiens uncharacterized LOC100506912 (LOC100506912), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310120371|ref|XR_108971.1| PREDICTED: Homo sapiens uncharacterized LOC100506912 (LOC100506912), misc_RNA"	NA	NA	NA	NA	NA	XR_108971.1	NA	NA	NA	NA	NA	Unknown
CUST_29497_PI429285431	3.3886735	P	3.9537745	P	0.675908095974782	0	lncRNA	31255-1_{1..619}	n332925|AF086473|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067352|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067352|-0.2925480|-0.2920434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332925|AF086473|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067352|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067352|-0.2925480|-0.2920434	chr6	127617334	127617952	+	NA	NA	NA	NA	ECHDC1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60chr6:127609857-127630368"	NA	inner
LNCA_21_P0002624	0.8947131	A	2.4024043	A	0.351673565486607	0	lncRNA	TCONS_00004986	NA	NA	NA	NA	XLOC_001823	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001823), lincRNA [TCONS_00004986]"	chr2:207791035-207791094	hs|2q33.3	Agilent_HUMAN_G3V2	TCONS_00004986	TCONS_00004986	chr2	207791035	207791094	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7442_PI429285431	1.710734	A	0.91003644	A	1.7419431729934	0	lncRNA	9085-1_{1..548}	lnc-KIAA1919-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1919-3:4	chr6	111908196	111908743	+	lnc-KIAA1919-3	lnc-KIAA1919-3:4	ENSG00000231889	TRAF3IP2-AS1	TRAF3IP2	NA	chr6:111898196-111918336	inter
CUST_4412_PI429285431	5.3628044	P	5.032212	P	1.25752963583007	0	lncRNA	4362-1_{1..2285}	"transcript_id ""ENST00000428207.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000428207.1"" | genecode_v17"	chr12	112277573	112279857	-	ENSG00000234608.2	ENST00000428207.1	MAPKAPK5-AS1	MAPKAPK5-AS1-001	MAPKAPK5	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr12:112280279-112290706"	NA	inner
LNCA_21_P0011449	0.89586115	A	1.2570391	A	0.77852865710088	0	lncRNA	TCONS_l2_00009900	NA	NA	NA	NA	XLOC_l2_005341	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005341), lincRNA [TCONS_l2_00009900]"	chr16:89314403-89314662	hs|16q24.3	Agilent_HUMAN_G3V2	TCONS_l2_00009900	TCONS_l2_00009900	chr16	 89314403	 89314662	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15976_PI429285431	1.8044304	A	1.7678967	A	1.02564658787778	0	lncRNA	17674-1_{1..603}	lnc-TLK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TLK1-1:1	chr2	172157522	172158124	-	lnc-TLK1-1	lnc-TLK1-1:1	XLOC_002390	linc-TLK1	NA	"hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90"	NA	inter
CUST_39998_PI429285431	4.9880853	P	4.3469534	P	1.55955226250647	0	lncRNA	40863-2_{3001..5904}	n407114|NR_024618|lncRNA|Homosapiens||RefGeneNoncode|NR_024618||0.5959830|-0.2836712	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407114|NR_024618|lncRNA|Homosapiens||RefGeneNoncode|NR_024618||0.5959830|-0.2836712	chr3	122608359	122611262	+	NA	NA	NA	NA	DIRC2	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80chr3:122595359-122599986"	NA	inter
CUST_29503_PI429285431	4.8953767	P	5.0256763	P	0.913641697392681	0	lncRNA	31261-1_{1..500}	n332934|AF086538|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067417|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067417|-1.1321000|-0.2742982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332934|AF086538|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067417|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067417|-1.1321000|-0.2742982	chr3	 64563475	 64563974	+	NA	NA	NA	NA	ADAMTS9	NA	chr3:64553475-64573975	inner
CUST_20104_PI429285431	6.866575	P	7.206899	P	0.78986390455502	0	lncRNA	21752-1_{1..637}	lnc-AAAS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AAAS-1:1	chr12	 53693927	 53694563	-	lnc-AAAS-1	lnc-AAAS-1:1	ENSG00000257605.1	RP11-680A11.5	ESPL1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C12orf10:range=chr12:53693522-537009335'pad=0,hg19_refFlat_C12orf10:range=chr12:53693522-537009335'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50chr12:53683927-53687427"	NA	inner
CUST_43242_PI429285431	7.176813	P	7.2948236	P	0.921457415894368	0	lncRNA	48059-1_{1..906}	ENST00000586051 havana:sense_intronic chromosome:GRCh37:19:11432832:11434871:1 gene:ENSG00000267576 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000586051 havana:sense_intronic chromosome:GRCh37:19:11432832:11434871:1 gene:ENSG00000267576 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 11432832	 11433737	+	ENSG00000267576	ENST00000586051	NA	NA	TSPAN16	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.75chr19:11422832-11437672"	NA	inner
CUST_11060_PI429285431	2.0222611	A	2.789585	P	0.58750624815598	0	lncRNA	12611-1_{1..207}	lnc-THBS2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THBS2-6:1	chr6	169357835	169358041	-	lnc-THBS2-6	lnc-THBS2-6:1	XLOC_005932	linc-DACT2-7	NA	NA	NA	inter
CUST_17292_PI429285431	1.441365	A	0.8964671	A	1.45891709254674	0	lncRNA	19010-1_{1..269}	lnc-NETO1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NETO1-2:1	chr18	 70952943	 70953211	-	lnc-NETO1-2	lnc-NETO1-2:1	XLOC_012878	linc-NETO1-4	NA	NA	NA	inter
CUST_15409_PI429285431	3.4403744	P	3.5825486	P	0.906152517153099	0	lncRNA	17095-1_{1..351}	lnc-IGFL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGFL2-1:1	chr19	 46699366	 46699716	+	lnc-IGFL2-1	lnc-IGFL2-1:1	XLOC_013099	linc-IGFL1-2	NA	NA	NA	inter
CUST_7682_PI429285431	0.89542556	A	0.8867722	A	1.00601607641973	0	lncRNA	9316-1_{1..1117}	lnc-CX3CR1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CX3CR1-2:2	chr3	 40350814	 40351930	-	lnc-CX3CR1-2	lnc-CX3CR1-2:2	ENSG00000246446	ENST00000502134	EIF1B	"hg19_refFlat_MYRIP:range=chr3:39942308-402996575'pad=0,hg19_refFlat_MYRIP:range=chr3:39942308-402996575'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.60chr3:40351173-40353915"	NA	inter
CUST_33971_PI429285431	0.8985598	A	0.9004352	A	0.998700916318283	0	lncRNA	35508-1_{1..786}	n340779|BC042014|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3242|NULL|-1.2780200|-0.3915068	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340779|BC042014|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3242|NULL|-1.2780200|-0.3915068	chr17	 57043312	 57044097	+	NA	NA	NA	NA	PPM1E	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30chr17:57033312-57054085"	NA	inter
CUST_51847_PI429285431	0.9235485	A	1.0886961	A	0.891837272197655	0	lncRNA	55402-1_{1..266}	hg19_lincRNAsTranscripts_TCONS_l2_00013127 range=chr19:43877100-43877707 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013127 range=chr19:43877100-43877707 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 43877100	 43877365	-	NA	NA	NA	NA	TEX101	NA	chr19:43875887-43887707	inter
CUST_30273_PI429285431	4.492795	P	4.880436	P	0.764378444527076	0	lncRNA	32049-1_{1..837}	n335164|AY364088|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000253210|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000253210|1.3743700|-0.2600748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335164|AY364088|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000253210|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000253210|1.3743700|-0.2600748	chr10	 52071047	 52071883	-	NA	NA	NA	NA	SGMS1	NA	chr10:52065345-52383737	inner
LNCA_21_P0002482	0.9019013	A	0.8965845	A	1.00369212408932	0	lncRNA	TCONS_00004364	NA	NA	NA	NA	XLOC_002244	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002244), lincRNA [TCONS_00004364]"	chr2:105810434-105810375	hs|2q12.1	Agilent_HUMAN_G3V2	TCONS_00004364	TCONS_00004364	chr2	105810375	105810434	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1502_PI429285431	1.5137666	A	1.0755978	A	1.35488349397586	0	lncRNA	1489-1_{1..634}	"transcript_id ""ENST00000498457.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000498457.1"" | genecode_v17"	chr3	153074896	153075529	+	ENSG00000241220.1	ENST00000498457.1	RP11-292E2.1	RP11-292E2.1-001	NA	NA	NA	inter
CUST_31956_PI429285431	0.8940058	A	0.89238495	A	1.00112411895623	0	lncRNA	33680-1_{1..3000}	n338514|AK127526|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|911|NULL|-1.0420500|-0.2351258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338514|AK127526|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|911|NULL|-1.0420500|-0.2351258	chr1	210851656	210854655	-	NA	NA	NA	NA	HHAT	NA	chr1:210841656-210849638	inner
CUST_26052_PI429285431	6.6600747	P	4.8771105	P	3.44132512604208	0	lncRNA	27566-2_{3001..5941}	lnc-PMM2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-PMM2-6:1	chr16	  9204098	  9207038	+	lnc-PMM2-6	lnc-PMM2-6:1	ENSG00000263244.1	RP11-473I1.10	C16orf72	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-59.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50chr16:9191098-9213555"	NA	inner
CUST_27696_PI429285431	0.8961457	A	1.3872321	A	0.711489119740449	0	lncRNA	29275-1_{1..446}	n324904|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000157936|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000157936|-1.4616000|-0.4966979	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324904|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000157936|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000157936|-1.4616000|-0.4966979	chr21	 15361261	 15361706	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28378_PI429285431	3.3798456	P	3.3489978	P	1.02161229999531	0	lncRNA	30030-1_{1..825}	n325693|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045276|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045276|-1.1075600|-0.3219249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325693|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045276|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045276|-1.1075600|-0.3219249	chr13	 74024980	 74025804	+	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.72;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.72"	NA	inter
CUST_26778_PI429285431	0.89626706	A	0.88958687	A	1.0046410915223	0	lncRNA	28276-2_{3001..3216}	n323829|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057506|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057506|0.3302730|-0.3177274	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323829|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057506|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057506|0.3302730|-0.3177274	chrX	100148476	100148691	-	NA	NA	NA	NA	XKRX	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70chrX:100135476-100159618"	NA	inter
CUST_28193_PI429285431	0.8890752	A	0.8915741	A	0.99826939373948	0	lncRNA	29820-1_{1..381}	n325473|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322861|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322861|-1.4127500|-0.1898888	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325473|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322861|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322861|-1.4127500|-0.1898888	chr2	  3998309	  3998689	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33076_PI429285431	4.3071537	P	4.634157	P	0.797190653055954	0	lncRNA	34682-1_{1..943}	n339764|CR618631|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2211|NULL|-1.3546900|-0.4388559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339764|CR618631|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2211|NULL|-1.3546900|-0.4388559	chr18	  1314155	  1315097	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32336_PI429285431	5.075495	P	5.2882195	P	0.862906111128496	0	lncRNA	34018-1_{1..902}	n338916|AK098629|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1342|NULL|-0.9544370|-0.2345382	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338916|AK098629|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1342|NULL|-0.9544370|-0.2345382	chr2	 97480967	 97481868	-	NA	NA	NA	NA	CNNM4	"hg19_refFlat_CNNM3:range=chr2:97482015-974983535'pad=0,hg19_refFlat_CNNM3:range=chr2:97482015-974983535'pad=0 3'pad=0 strand=+ repeatMasking=none,-112.40chr2:97470967-97477628"	NA	inner
CUST_17795_PI429285431	2.3283098	A	2.1091452	A	1.16405933671417	0	lncRNA	19527-1_{1..216}	lnc-HMG20A-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HMG20A-5:1	chr15	 77992011	 77992226	+	lnc-HMG20A-5	lnc-HMG20A-5:1	XLOC_011316	linc-SH2D7-2	NA	NA	NA	inter
CUST_5965_PI429285431	7.324496	P	7.3905115	P	0.955272673086624	0	lncRNA	5894-1_{1..724}	"transcript_id ""ENST00000584660.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584660.1"" | genecode_v17"	chr17	 71782941	 71783664	+	ENSG00000234721.2	ENST00000584660.1	AC125421.1	AC125421.1-003	NA	NA	NA	inter
CUST_15022_PI429285431	5.5540395	P	5.640069	P	0.942112009550498	0	lncRNA	16684-1_{1..568}	lnc-HSPG2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HSPG2-1:2	chr1	 22351553	 22352120	-	lnc-HSPG2-1	lnc-HSPG2-1:2	XLOC_000732	linc-HSPG2	NA	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.60"	NA	inter
CUST_1495_PI429285431	1.45687	A	1.3210827	A	1.09869222279844	0	lncRNA	1482-1_{1..472}	"transcript_id ""ENST00000472890.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000472890.1"" | genecode_v17"	chr3	149956306	149956777	+	ENSG00000244541.1	ENST00000472890.1	RP11-167H9.6	RP11-167H9.6-002	NA	NA	NA	inter
CUST_26945_PI429285431	0.900618	A	0.8961946	A	1.00307077243023	0	lncRNA	28466-1_{1..410}	n324026|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053137|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053137|-0.9193000|-0.1671603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324026|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053137|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053137|-0.9193000|-0.1671603	chr9	 94949142	 94949551	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32562_PI429285431	7.555486	P	7.784959	P	0.852946406436228	0	lncRNA	34226-1_{1..1148}	n339179|BC073928|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1610|NULL|-0.8536020|-0.1779641	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339179|BC073928|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1610|NULL|-0.8536020|-0.1779641	chr16	 30887232	 30888379	+	NA	NA	NA	NA	BCL7C	"hg19_refFlat_BCL7C:range=chr16:30899186-309052655'pad=0,hg19_refFlat_BCL7C:range=chr16:30899186-309052655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.50chr16:30899116-30905399"	NA	inner
CUST_32105_PI429285431	2.5918648	A	2.6449647	A	0.963863062343249	0	lncRNA	33809-1_{1..3000}	n338671|AF305819|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1085|NULL|-1.0504700|-0.3534638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338671|AF305819|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1085|NULL|-1.0504700|-0.3534638	chr13	 43497346	 43500345	+	NA	NA	NA	NA	EPSTI1	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_EPSTI1:range=chr13:43462386-435663015'pad=0,hg19_refFlat_EPSTI1:range=chr13:43462386-435663015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_EPSTI1:range=chr13:43462630-435663015'pad=0,hg19_refFlat_EPSTI1:range=chr13:43462630-435663015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70chr13:43487346-43511079"	NA	inner
LNCA_21_P0010181	0.9084888	A	0.9015384	A	1.00482927369886	0	lncRNA	XR_109658	XR_109658	XR_109658	NA	Hs.334196	LOC100505973	uncharacterized LOC100505973	ENST00000449840	THC2715574	NA	"PREDICTED: Homo sapiens hypothetical LOC100505973 (LOC100505973), miscRNA [XR_109658]"	chr21:20325726-20325667	hs|21q21.1	Agilent_HUMAN_G3V2	XR_109658	XR_109658	chr21	 20325667	 20325726	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009188	0.90833294	A	0.9012866	A	1.00489609761056	0	lncRNA	ENST00000426080	NA	NA	NA	NA	XLOC_012416	NA	ENST00000426080	THC2749035	NA	"BROAD Institute lincRNA (XLOC_012416), lincRNA [TCONS_00025218]"	chr17:19374491-19374432	hs|17p11.2	Agilent_HUMAN_G3V2	ENST00000426080	ENST00000426080	chr17	 19374432	 19374491	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30266_PI429285431	3.8895447	P	4.2128067	P	0.799260667788836	0	lncRNA	32041-1_{1..537}	n335151|AY295767|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251484|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251484|0.1909580|-0.4338666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335151|AY295767|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251484|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251484|0.1909580|-0.4338666	chr10	 71977523	 71978059	-	NA	NA	NA	NA	PPA1	NA	chr10:71967523-71988060	inner
CUST_44038_PI429285431	0.90299404	A	1.5027767	A	0.659853353888531	0	lncRNA	48719-1_{1..3000}	"gi|223555985|ref|NR_026830.1| Homo sapiens SATB2 antisense RNA 1 (SATB2-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223555985|ref|NR_026830.1| Homo sapiens SATB2 antisense RNA 1 (SATB2-AS1), non-coding RNA"	Chr2	200332821	200335820	+	150538	NR_026830.1	NA	NA	NA	NA	NA	inter
CUST_51928_PI429285431	1.8590022	A	0.9280449	A	1.90654066112402	0	lncRNA	55468-1_{1..669}	hg19_lincRNAsTranscripts_TCONS_l2_00016426 range=chr20:1675851-1678576 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016426 range=chr20:1675851-1678576 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	  1675851	  1676519	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005144	0.90666056	A	1.414432	A	0.70330801320905	0	lncRNA	TCONS_00012630	NA	NA	NA	NA	XLOC_005557	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005557), lincRNA [TCONS_00012630]"	chr6:170348647-170348706	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012630	TCONS_00012630	chr6	170348647	170348706	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10026_PI429285431	1.5360868	A	1.0417554	A	1.40866777338113	0	lncRNA	11552-1_{1..244}	lnc-ACSM5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACSM5-2:1	chr16	 20220575	 20220818	+	lnc-ACSM5-2	lnc-ACSM5-2:1	XLOC_011661	linc-ACSM5-5	NA	NA	NA	inter
CUST_11078_PI429285431	1.3513471	A	1.273328	A	1.05556769232346	0	lncRNA	12630-1_{1..590}	lnc-TMEM206-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM206-1:1	chr1	212605967	212606556	-	lnc-TMEM206-1	lnc-TMEM206-1:1	XLOC_001192	linc-TMEM206-5	NENF	NA	chr1:212606229-212616095	inter
CUST_21116_PI429285431	1.7971001	A	1.8740611	A	0.948052593241544	0	lncRNA	22741-1_{1..507}	lnc-RPA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RPA2-1:1	chr1	 28356958	 28357464	-	lnc-RPA2-1	lnc-RPA2-1:1	ENSG00000237895.1	EYA3-IT1	EYA3	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-60.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10chr1:28346958-28367423"	NA	inner
LNCA_21_P0006665	1.1574497	A	0.9205189	A	1.17848287959968	0	lncRNA	ENST00000450581	NA	NA	NA	NA	XLOC_008438	NA	ENST00000450581	NA	NA	"BROAD Institute lincRNA (XLOC_008438), lincRNA [TCONS_00017807]"	chr10:30946294-30946353	hs|10p11.23	Agilent_HUMAN_G3V2	ENST00000450581	ENST00000450581	chr10	 30946294	 30946353	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_24_P520767	5.323861	P	5.475948	P	0.899947657889318	0	lncRNA	XR_132798	XR_132798	XR_132798	   149351	Hs.729430	LOC149351	uncharacterized LOC149351	NA	THC2637940	NA	"PREDICTED: Homo sapiens hypothetical LOC149351 (LOC149351), miscRNA [XR_132798]"	chr1:91297731-91297672	hs|1p22.2	Agilent_HUMAN_G3V2	XR_132798	XR_132798	chr1	 91297672	 91297731	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002031	1.5181837	A	0.9219688	A	1.51174509705748	0	lncRNA	ENST00000423706	NA	NA	NA	NA	XLOC_002020	NA	ENST00000423706	NA	NA	"BROAD Institute lincRNA (XLOC_002020), lincRNA [TCONS_00003233]"	chr2:23553831-23553685	hs|2p24.1	Agilent_HUMAN_G3V2	ENST00000423706	ENST00000423706	chr2	 23553685	 23553831	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21229_PI429285431	2.142579	A	2.1793215	A	0.974853612500487	0	lncRNA	22855-1_{1..606}	lnc-USP8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP8-1:1	chr15	 50852196	 50852801	+	lnc-USP8-1	lnc-USP8-1:1	ENSG00000259684.1	RP11-120K9.2	TRPM7	NA	chr15:50849351-50862697	inner
CUST_391_PI429285431	1.3034887	A	0.89938504	A	1.32326651535738	0	lncRNA	383-1_{1..601}	"transcript_id ""ENST00000400755.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000400755.3"" | genecode_v17"	chr1	142618771	142619371	+	ENSG00000230880.2	ENST00000400755.3	RP11-417J8.3	RP11-417J8.3-006	NA	NA	NA	inter
CUST_11254_PI429285431	0.919397	A	0.9295848	A	0.992963229981019	0	lncRNA	12812-1_{1..1112}	lnc-C1orf200-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf200-4:1	chr1	  9488981	  9490092	-	lnc-C1orf200-4	lnc-C1orf200-4:1	XLOC_000697	linc-GPR157-3	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_47918_PI429285431	3.2695272	P	3.5148003	P	0.843656078187404	0	lncRNA	51809-1_{1..417}	"gi|410172061|ref|XR_171574.1| PREDICTED: Homo sapiens uncharacterized LOC101060264, transcript variant 1 (LOC101060264), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410172061|ref|XR_171574.1| PREDICTED: Homo sapiens uncharacterized LOC101060264, transcript variant 1 (LOC101060264), misc_RNA"	NA	NA	NA	NA	NA	XR_171574.1	NA	NA	NA	NA	NA	Unknown
CUST_2082_PI429285431	1.6832654	A	3.284056	P	0.329696253919632	0	lncRNA	2073-1_{1..943}	"transcript_id ""ENST00000506299.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506299.1"" | genecode_v17"	chr5	 10137250	 10138192	+	ENSG00000249807.1	ENST00000506299.1	CTD-2199O4.1	CTD-2199O4.1-001	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-24.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_37430_PI429285431	1.4715307	A	2.5235014	A	0.482308887506236	0	lncRNA	38532-4_{9001..11825}	n345881|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1430|NULL|-1.3048800|-0.2856205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n345881|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1430|NULL|-1.3048800|-0.2856205	chr12	105872638	105875462	+	NA	NA	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-18.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00"	NA	inter
CUST_37453_PI429285431	7.496251	P	7.945638	P	0.732353958499785	0	lncRNA	38552-1_{1..786}	n345903|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1452|NULL|-1.2992700|-0.1251462	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345903|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1452|NULL|-1.2992700|-0.1251462	chr3	195686869	195687654	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28191_PI429285431	1.2544802	A	1.102815	A	1.11085090837359	0	lncRNA	29818-1_{1..607}	n325471|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322863|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322863|-1.3301000|-0.3915232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325471|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322863|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322863|-1.3301000|-0.3915232	chr2	  4162108	  4162714	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13657_PI429285431	1.2913219	A	0.91432744	A	1.29863361592128	0	lncRNA	15296-1_{1..3000}	lnc-MTR-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTR-1:2	chr1	237084732	237087731	+	lnc-MTR-1	lnc-MTR-1:2	XLOC_000633	linc-RYR2-2	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF680:range=chr7:63986777-640233325'pad=0,hg19_refFlat_ZNF680:range=chr7:63986777-640233325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-36.51;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.92;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.74;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00"	NA	inter
CUST_18920_PI429285431	1.2818274	A	1.1583489	A	1.08935826388899	0	lncRNA	20611-1_{1..509}	lnc-HSCB-1:21	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HSCB-1:21	chr22	 28394592	 28395100	+	lnc-HSCB-1	lnc-HSCB-1:21	ENSG00000235954	TTC28-AS1	TTC28	"hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0,hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0 3'pad=0 strand=- repeatMasking=none,-97.10chr22:28384592-28404770"	NA	inner
CUST_49273_PI429285431	1.4532373	A	1.695303	A	0.845533781087022	0	lncRNA	53092-1_{1..347}	hg19_lincRNAsTranscripts_TCONS_l2_00022639 range=chr5:173930697-173944811 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022639 range=chr5:173930697-173944811 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	173930697	173931043	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1514_PI429285431	2.5718298	A	3.4886913	P	0.529660012731008	0	lncRNA	1501-1_{1..589}	"transcript_id ""ENST00000467995.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000467995.1"" | genecode_v17"	chr3	156807670	156808258	+	ENSG00000241135.1	ENST00000467995.1	RP11-6F2.6	RP11-6F2.6-001	NA	NA	NA	inter
CUST_25989_PI429285431	5.1897726	P	5.5823317	P	0.761777139920632	0	lncRNA	27508-1_{1..616}	lnc-RGS5-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RGS5-1:8	chr1	163291412	163292027	-	lnc-RGS5-1	lnc-RGS5-1:8	ENSG00000232995.2	RP11-267N12.3	NUF2	NA	chr1:163291723-163301542	inner
CUST_1552_PI429285431	4.969286	P	5.4710875	P	0.706224364717251	0	lncRNA	1539-1_{1..429}	"transcript_id ""ENST00000494900.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000494900.1"" | genecode_v17"	chr3	168720862	168721290	+	ENSG00000241383.1	ENST00000494900.1	RP11-152C17.1	RP11-152C17.1-001	NA	NA	NA	inter
CUST_9731_PI429285431	0.9021275	A	0.9138938	A	0.991877390452221	0	lncRNA	11247-1_{1..720}	lnc-TEAD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TEAD1-1:1	chr11	 12661945	 12662664	+	lnc-TEAD1-1	lnc-TEAD1-1:1	XLOC_009069	linc-TEAD1	NA	NA	NA	inter
LNCA_19_P00806707	0.9133452	A	0.91939837	A	0.99581305209101	0	lncRNA	TCONS_l2_00028290	NA	NA	NA	NA	XLOC_l2_014579	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014579), lincRNA [TCONS_l2_00028290]"	chr8:90618091-90618032	hs|8q21.3	Agilent_HUMAN_G3V2	TCONS_l2_00028290	TCONS_l2_00028290	chr8	 90618032	 90618091	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37698_PI429285431	2.6450524	A	2.2492065	A	1.31571398087557	0	lncRNA	38790-1_{1..1653}	n346190|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1740|NULL|-1.6225600|-0.1744084	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346190|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1740|NULL|-1.6225600|-0.1744084	chr5	177045161	177046813	+	NA	NA	NA	NA	B4GALT7	NA	chr5:177035161-177037348	inter
CUST_39383_PI429285431	5.8510904	P	5.970107	P	0.920815102021581	0	lncRNA	40346-1_{1..643}	n386523|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mtj.1||-1.0082200|-0.1197163	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386523|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mtj.1||-1.0082200|-0.1197163	chr9	107689910	107690552	+	NA	NA	NA	NA	ABCA1	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10chr9:107679910-107690527"	NA	inner
LNCA_21_P0013012	2.7971811	A	3.322629	P	0.694743385972146	0	lncRNA	TCONS_l2_00024035	NA	NA	NA	NA	XLOC_l2_012397	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012397), lincRNA [TCONS_l2_00024035]"	chr6:11429623-11429682	hs|6p24.2	Agilent_HUMAN_G3V2	TCONS_l2_00024035	TCONS_l2_00024035	chr6	 11429623	 11429682	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45062_PI429285431	0.90042055	A	0.89926416	A	1.00080186979395	0	lncRNA	49551-1_{1..549}	"gi|310120083|ref|XR_108804.1| PREDICTED: Homo sapiens uncharacterized LOC100506664 (LOC100506664), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310120083|ref|XR_108804.1| PREDICTED: Homo sapiens uncharacterized LOC100506664 (LOC100506664), misc_RNA"	Chr7	125077910	125078458	+	100506664	XR_108804.2	NA	NA	NA	NA	NA	inter
CUST_67_PI429201921	3.7823477	P	3.5010495	P	1.21528796170127	0	lncRNA	69-1_{1..1952}	TC06003636.hg.1	TCONS_l2_00025385-XLOC_l2_012983 // Broad TUCP // linc-LRFN2-1 chr6:-:40681149-40683102 // chr6 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00024744-XLOC_l2_012983 // Broad TUCP // linc-LRFN2-1 chr6:-:40682107-40683075 // chr6 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6:-:40681149-40683102	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00025385-XLOC_l2_012983	linc-LRFN2-1	chr6	 40681149	 40683102	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33044_PI429285431	8.365353	P	8.445728	P	0.945811769735979	0	lncRNA	34657-1_{1..218}	n339733|Z70769|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2179|NULL|-0.6074890|-0.3096417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339733|Z70769|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2179|NULL|-0.6074890|-0.3096417	chr20	 57486023	 57486240	-	NA	NA	NA	NA	GNAS	NA	chr20:57476023-57486250	inner
CUST_41659_PI429285431	7.0132866	P	7.4019933	P	0.763814016638419	0	lncRNA	43077-1_{1..62}	ENST00000580852 ncrna:miRNA chromosome:GRCh37:5:176056440:176056501:-1 gene:ENSG00000266329 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580852 ncrna:miRNA chromosome:GRCh37:5:176056440:176056501:-1 gene:ENSG00000266329 gene_biotype:miRNA transcript_biotype:miRNA	chr5	176056440	176056501	-	ENSG00000266329	ENST00000580852	NA	NA	EIF4E1B	NA	chr5:176057683-176066501	inter
CUST_40546_PI429285431	1.2285116	A	0.9066893	A	1.24990833907599	0	lncRNA	41304-1_{1..1165}	n409671|NR_034071|lncRNA|Homosapiens||RefGeneNoncode|NR_034071||4.4349700|-0.2054110	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409671|NR_034071|lncRNA|Homosapiens||RefGeneNoncode|NR_034071||4.4349700|-0.2054110	chr11	104757417	104758581	-	NA	NA	NA	NA	CASP12	NA	chr11:104756445-104769397	inter
CUST_12195_PI429285431	4.8530684	P	5.205496	P	0.783265000836681	0	lncRNA	13795-1_{1..271}	lnc-CREB3L1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CREB3L1-3:1	chr11	 46182929	 46183199	+	lnc-CREB3L1-3	lnc-CREB3L1-3:1	XLOC_009126	linc-CREB3L1-1	NA	NA	NA	inter
CUST_11927_PI429285431	2.1259184	A	2.0269756	A	1.07098835978312	0	lncRNA	13508-1_{1..2726}	lnc-SLC12A7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC12A7-1:1	chr5	  1048075	  1050800	-	lnc-SLC12A7-1	lnc-SLC12A7-1:1	XLOC_004700	linc-BRD9-1	SLC12A7	NA	chr5:1050489-1058427	inter
CUST_4682_PI429285431	1.482859	A	0.89653254	A	1.50141880737476	0	lncRNA	4629-1_{1..590}	"transcript_id ""ENST00000601607.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601607.1"" | genecode_v17"	chr13	106358271	106358860	+	ENSG00000226620.2	ENST00000601607.1	LINC00343	LINC00343-005	NA	NA	NA	inter
CUST_27919_PI429285431	0.9070471	A	0.9723947	A	0.955715021823696	0	lncRNA	29520-1_{1..844}	n325163|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331497|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331497|-1.1670900|-0.3572941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325163|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331497|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331497|-1.1670900|-0.3572941	chr2	114453615	114454458	+	NA	NA	NA	NA	SLC35F5	NA	chr2:114471933-114491349	inner
CUST_51042_PI429285431	4.1690483	P	2.1181884	A	4.14352865696563	0	lncRNA	54684-1_{1..1270}	hg19_lincRNAsTranscripts_TCONS_l2_00007059 range=chr13:20137464-20138901 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007059 range=chr13:20137464-20138901 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 20137464	 20138733	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007196	0.900323	A	1.0812675	A	0.88212529961232	0	lncRNA	TCONS_00019279	NA	NA	NA	NA	XLOC_009112	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009112), lincRNA [TCONS_00019279]"	chr11:41871790-41871849	hs|11p12	Agilent_HUMAN_G3V2	TCONS_00019279	TCONS_00019279	chr11	 41871790	 41871849	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31260_PI429285431	7.8104043	P	6.7122784	P	2.14076420726444	0	lncRNA	33050-2_{3001..4404}	n337715|D87440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|97|NULL|10.2096000|-0.2695000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337715|D87440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|97|NULL|10.2096000|-0.2695000	chr15	 41712335	 41713738	+	NA	NA	NA	NA	RTF1	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30chr15:41709302-41775761"	NA	inner
CUST_11533_PI429285431	1.3786306	A	0.9129134	A	1.38100371446843	0	lncRNA	13105-1_{1..284}	lnc-TSN-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSN-6:2	chr2	123229178	123229461	+	lnc-TSN-6	lnc-TSN-6:2	XLOC_001649	linc-CNTNAP5-7	NA	NA	NA	inter
CUST_5076_PI429285431	4.6457396	P	4.144731	P	1.41520259641724	0	lncRNA	5016-1_{1..497}	"transcript_id ""ENST00000479229.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000479229.1"" | genecode_v17"	chr14	106067994	106068490	-	ENSG00000254140.1	ENST00000479229.1	RP11-731F5.1	RP11-731F5.1-002	NA	NA	NA	inter
CUST_24681_PI429285431	4.9365115	P	5.3551135	P	0.748149244575337	0	lncRNA	26228-1_{1..2293}	lnc-C1orf131-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf131-1:2	chr1	231319851	231322143	-	lnc-C1orf131-1	lnc-C1orf131-1:2	ENSG00000235710.3	RP5-1097F14.3	TRIM67	NA	chr1:231309851-231332143	inner
CUST_15320_PI429285431	1.2699993	A	2.8259192	A	0.34011159594353	0	lncRNA	16999-1_{1..266}	lnc-C1orf180-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf180-1:4	chr1	 85084416	 85084681	-	lnc-C1orf180-1	lnc-C1orf180-1:4	XLOC_000895	linc-CTBS	NA	NA	NA	inter
CUST_1918_PI429285431	1.5920609	A	0.89871943	A	1.61702442416228	0	lncRNA	1909-1_{1..563}	"transcript_id ""ENST00000506232.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506232.1"" | genecode_v17"	chr4	139585879	139586441	-	ENSG00000250977.1	ENST00000506232.1	RP11-173E2.2	RP11-173E2.2-001	NA	NA	NA	inter
CUST_4880_PI429285431	1.5747508	A	1.5931507	A	0.987327146736778	0	lncRNA	4823-1_{1..368}	"transcript_id ""ENST00000554032.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554032.1"" | genecode_v17"	chr14	 71276922	 71277289	+	ENSG00000259153.1	ENST00000554032.1	RP6-65G23.3	RP6-65G23.3-002	MAP3K9	NA	chr14:71266922-71275888	inter
CUST_20785_PI429285431	0.9066663	A	0.9041284	A	1.00176068642089	0	lncRNA	22418-1_{1..911}	lnc-VWDE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-VWDE-1:1	chr7	 12610831	 12611741	-	lnc-VWDE-1	lnc-VWDE-1:1	ENSG00000225606.1	AC005281.2	SCIN	"hg19_refFlat_SCIN:range=chr7:12610413-126923405'pad=0,hg19_refFlat_SCIN:range=chr7:12610413-126923405'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.90chr7:12610203-12621017"	NA	inner
CUST_48651_PI429285431	1.8769034	A	2.6301577	A	0.593263816583562	0	lncRNA	52498-1_{1..2982}	hg19_lincRNAsTranscripts_TCONS_l2_00013792 range=chr2:91960846-91966523 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013792 range=chr2:91960846-91966523 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 91960846	 91963827	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80"	NA	inter
CUST_12543_PI429285431	0.90472996	A	0.90173805	A	1.00207598586197	0	lncRNA	14154-1_{1..1083}	lnc-CBLB-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CBLB-3:1	chr3	106146751	106147833	-	lnc-CBLB-3	lnc-CBLB-3:1	XLOC_003199	linc-CBLB-10	NA	NA	NA	inter
CUST_181_PI429201921	0.8939396	A	1.1675364	A	0.827254534707551	0	lncRNA	149-2_{3001..4646}	TC17002275.hg.1	TCONS_l2_00011572-XLOC_l2_005826 // Broad TUCP // linc-NME1-3 chr17:+:49021464-49025188 // chr17 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00011573-XLOC_l2_005826 // Broad TUCP // linc-NME1-3 chr17:+:49021474-49026111 // chr17 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr17:+:49021464-49025188	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00011572-XLOC_l2_005826	linc-NME1-3	chr17	 49021464	 49025188	+	NA	NA	NA	NA	RERE	NA	chr1:8855919-8877110	Unknown
CUST_15773_PI429285431	1.3297796	A	1.4767067	A	0.903172146675246	0	lncRNA	17462-1_{1..276}	lnc-UPP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UPP2-2:1	chr2	158733846	158734121	+	lnc-UPP2-2	lnc-UPP2-2:1	XLOC_001720	linc-UPP2	ACVR1	NA	chr2:158723846-158732374	inter
CUST_32316_PI429285431	1.1238301	A	0.88929087	A	1.17653091508481	0	lncRNA	33999-1_{1..305}	n338893|AJ132086|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1319|NULL|2.3562500|-0.1160407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338893|AJ132086|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1319|NULL|2.3562500|-0.1160407	chr2	 84852103	 84852407	+	NA	NA	NA	NA	DNAH6	NA	chr2:84842103-84874410	inner
LNCA_21_P0006529	0.8949125	A	0.89055437	A	1.00302539281327	0	lncRNA	TCONS_00017300	NA	NA	NA	NA	XLOC_008127	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008127), lincRNA [TCONS_00017300]"	chrX:20330020-20329961	hs|Xp22.12	Agilent_HUMAN_G3V2	TCONS_00017300	TCONS_00017300	chrX	 20329961	 20330020	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33394_PI429285431	0.88580644	A	1.2810826	A	0.760343818036795	0	lncRNA	34972-1_{1..1932}	n340114|CR593212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2573|NULL|-0.9830910|-0.2186658	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340114|CR593212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2573|NULL|-0.9830910|-0.2186658	chr10	 98052441	 98054372	-	NA	NA	NA	NA	DNTT	NA	chr10:98064085-98076460	inner
CUST_34003_PI429285431	0.91746557	A	0.9203397	A	0.998009787997479	0	lncRNA	35540-1_{1..1174}	n340817|AF131798|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3281|NULL|0.1607230|-0.2567876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340817|AF131798|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3281|NULL|0.1607230|-0.2567876	chr17	 71171621	 71172794	+	NA	NA	NA	NA	SSTR2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10chr17:71161621-71168094"	NA	inter
CUST_3214_PI429285431	0.88388795	A	0.8881166	A	0.997073214586759	0	lncRNA	3193-1_{1..640}	"transcript_id ""ENST00000523678.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523678.1"" | genecode_v17"	chr8	 84824948	 84825587	+	ENSG00000254202.1	ENST00000523678.1	RP11-120I21.2	RP11-120I21.2-001	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80"	NA	inter
CUST_32476_PI429285431	0.898576	A	0.90846443	A	0.993169298649765	0	lncRNA	34145-1_{1..1114}	n339078|BC038217|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1508|NULL|-0.7154830|-0.1458660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339078|BC038217|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1508|NULL|-0.7154830|-0.1458660	chr16	 11441999	 11443112	-	NA	NA	NA	NA	LOC388210	NA	chr16:11452531-11453178	inner
CUST_38490_PI429285431	6.9254184	P	6.9998198	P	0.949736101721078	0	lncRNA	39507-1_{1..3000}	n383019|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fih.2||-0.2038870|-0.2647695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383019|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fih.2||-0.2038870|-0.2647695	chr16	 84696933	 84699932	+	NA	NA	NA	NA	KLHL36	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50chr16:84686933-84695916"	NA	inter
CUST_16909_PI429285431	8.445461	P	8.699645	P	0.838461241045021	0	lncRNA	18619-1_{1..367}	lnc-PRRC2C-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRRC2C-1:2	chr1	171595594	171595960	+	lnc-PRRC2C-1	lnc-PRRC2C-1:2	XLOC_000462	linc-METTL13-2	MYOC	NA	chr1:171604557-171605732	inter
CUST_32338_PI429285431	0.89959216	A	0.9037099	A	0.997149869484668	0	lncRNA	34020-1_{1..1895}	n338918|CR610346|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1344|NULL|9.4262600|-0.3629301	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338918|CR610346|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1344|NULL|9.4262600|-0.3629301	chr2	 99242185	 99244079	-	NA	NA	NA	NA	MGAT4A	NA	chr2:99235569-99347589	inner
CUST_50563_PI429285431	0.92245317	A	0.928688	A	0.995687670076635	0	lncRNA	54255-1_{1..344}	hg19_lincRNAsTranscripts_TCONS_l2_00030900 range=chrY:15866374-15902846 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030900 range=chrY:15866374-15902846 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrY	 15866374	 15866717	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20"	NA	inter
CUST_37582_PI429285431	0.890141	A	0.88944703	A	1.00048113905918	0	lncRNA	38684-2_{3001..6000}	n346058|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1608|NULL|-1.3006800|-0.3158944	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346058|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1608|NULL|-1.3006800|-0.3158944	chr6	138144786	138147785	-	NA	NA	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80"	NA	inter
CUST_37211_PI429285431	3.5612779	P	2.4706461	A	2.12967280916005	0	lncRNA	38324-1_{1..2459}	n345647|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1196|NULL|-1.3066100|-0.4555729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345647|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1196|NULL|-1.3066100|-0.4555729	chr4	106279606	106282064	-	NA	NA	NA	NA	PPA2	NA	chr4:106290234-106295763	inter
CUST_27847_PI429285431	1.8961217	A	1.8944994	A	1.00112512514996	0	lncRNA	29439-1_{1..1542}	n325081|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077868|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077868|3.5919900|-0.3627896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325081|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077868|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077868|3.5919900|-0.3627896	chr20	  5360637	  5362178	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8911_PI429285431	2.552909	A	3.2471871	P	0.618018487119197	0	lncRNA	10446-1_{1..1747}	lnc-ZNF726-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF726-1:1	chr19	 23969947	 23971693	+	lnc-ZNF726-1	lnc-ZNF726-1:1	ENSG00000250795	ENST00000508333	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-18.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20"	NA	inter
CUST_38339_PI429285431	2.615372	A	2.6304898	A	0.989575851538674	0	lncRNA	39385-1_{1..567}	n382068|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vhy.2||-1.1398200|-0.2221058	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382068|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vhy.2||-1.1398200|-0.2221058	chr13	 60587436	 60588002	+	NA	NA	NA	NA	DIAPH3	NA	chr13:60577436-60609284	inner
LNCA_21_P0003664	0.9026631	A	0.8972685	A	1.00374625150404	0	lncRNA	TCONS_00008286	NA	NA	NA	NA	XLOC_003729	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003729), lincRNA [TCONS_00008286]"	chr4:149614388-149621313	hs|4q31.23	Agilent_HUMAN_G3V2	TCONS_00008286	TCONS_00008286	chr4	149614388	149621313	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25518_PI429285431	5.3230033	P	6.0008025	P	0.625118151653911	0	lncRNA	27049-1_{1..598}	lnc-CRISPLD2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CRISPLD2-1:2	chr16	 84972987	 84973584	+	lnc-CRISPLD2-1	lnc-CRISPLD2-1:2	ENSG00000260340.1	RP11-254F19.3	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10"	NA	inter
CUST_20293_PI429285431	4.424352	P	4.4504695	P	0.982059608363958	0	lncRNA	21937-1_{1..707}	lnc-SIRT4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SIRT4-1:2	chr12	120647889	120648595	+	lnc-SIRT4-1	lnc-SIRT4-1:2	ENSG00000255857.1	RP1-278C19.3	RPLP0	NA	chr12:120637889-120639014	inner
CUST_24039_PI429285431	1.2795506	A	0.9149371	A	1.28753665044944	0	lncRNA	25591-1_{1..352}	lnc-SAP30-5:30	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:30	chr4	174505787	174506138	+	lnc-SAP30-5	lnc-SAP30-5:30	ENSG00000237125.3	RP11-471J12.1	NA	NA	NA	inter
CUST_41735_PI429285431	8.896307	P	8.966748	P	0.95234684215715	0	lncRNA	43266-1_{1..81}	ENST00000580198 ncrna:miRNA chromosome:GRCh37:X:153246548:153246628:1 gene:ENSG00000265176 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580198 ncrna:miRNA chromosome:GRCh37:X:153246548:153246628:1 gene:ENSG00000265176 gene_biotype:miRNA transcript_biotype:miRNA	chrX	153246548	153246628	+	ENSG00000265176	ENST00000580198	NA	NA	HCFC1	NA	chrX:153236548-153236819	inner
CUST_8271_PI429285431	0.90657616	A	2.0291204	A	0.459283149804916	0	lncRNA	9856-1_{1..3000}	lnc-GGT5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GGT5-1:1	chr22	 24535128	 24538127	-	lnc-GGT5-1	lnc-GGT5-1:1	ENSG00000225686	ENST00000452954	CABIN1	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CABIN1:range=chr22:24431966-245741645'pad=0,hg19_refFlat_CABIN1:range=chr22:24431966-245741645'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20chr22:24525128-24545705"	NA	inner
CUST_37983_PI429285431	7.357801	P	8.618046	P	0.417473057977143	0	lncRNA	39070-1_{1..291}	n346538|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2088|NULL|-1.1581000|-0.1671863	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346538|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2088|NULL|-1.1581000|-0.1671863	chr2	 91750934	 91751224	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43389_PI429285431	5.9494705	P	6.6103888	P	0.632475587334172	0	lncRNA	48202-1_{1..1494}	"gi|410170382|ref|XR_108378.4| PREDICTED: Homo sapiens putative PRAME family member 24 (PRAMEF24), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170382|ref|XR_108378.4| PREDICTED: Homo sapiens putative PRAME family member 24 (PRAMEF24), misc_RNA"	Chr1	 13607700	 13609193	-	729516	XR_108378.5	NA	NA	NA	NA	NA	inter
CUST_52138_PI429285431	7.586417	P	7.5980124	P	0.991994894069902	0	lncRNA	55662-1_{1..655}	hg19_lincRNAsTranscripts_TCONS_l2_00017898 range=chr22:20956763-20957575 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017898 range=chr22:20956763-20957575 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 20956763	 20957417	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
CUST_17687_PI429285431	0.92389965	A	1.1512814	A	0.85418368634648	0	lncRNA	19416-1_{1..1097}	lnc-AC002365.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC002365.1-1:1	chrX	  9935377	  9936473	+	lnc-AC002365.1-1	lnc-AC002365.1-1:1	XLOC_007927	linc-WWC3	LOC100288814	NA	chrX:9935398-9936042	inner
CUST_16661_PI429285431	1.0042144	A	1.5292237	A	0.694954630042395	0	lncRNA	18363-1_{1..422}	lnc-C8orf74-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C8orf74-3:1	chr8	 10713726	 10714147	+	lnc-C8orf74-3	lnc-C8orf74-3:1	XLOC_006709	linc-MTMR9	NA	NA	NA	inter
CUST_51713_PI429285431	11.360128	P	11.674364	P	0.804276794382972	0	lncRNA	55270-1_{1..670}	hg19_lincRNAsTranscripts_TCONS_l2_00011968 range=chr18:11619426-11621555 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011968 range=chr18:11619426-11621555 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 11619426	 11620095	-	NA	NA	NA	NA	AMAC1L1	NA	chr18:11609595-11610611	inter
CUST_39284_PI429285431	4.2087545	P	4.622711	P	0.750562179293548	0	lncRNA	40256-1_{1..3000}	n386263|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fmz.1||2.7758600|-0.2897543	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n386263|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fmz.1||2.7758600|-0.2897543	chr2	132160473	132163472	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001669	0.9086558	A	0.90196574	A	1.00464796465988	0	lncRNA	TCONS_00001970	NA	NA	NA	NA	XLOC_000116	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000116), lincRNA [TCONS_00001970]"	chr1:30465070-30465129	hs|1p35.2	Agilent_HUMAN_G3V2	TCONS_00001970	TCONS_00001970	chr1	 30465070	 30465129	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3320_PI429285431	0.8944486	A	0.8936988	A	1.00051985683474	0	lncRNA	3299-1_{1..1041}	"transcript_id ""ENST00000517380.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517380.1"" | genecode_v17"	chr8	134787794	134788834	-	ENSG00000253165.1	ENST00000517380.1	CTD-2309H9.3	CTD-2309H9.3-001	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70"	NA	inter
CUST_3691_PI429285431	4.2428317	P	4.5620804	P	0.801487152562995	0	lncRNA	3659-1_{1..335}	"transcript_id ""ENST00000440750.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440750.1"" | genecode_v17"	chr10	 49872244	 49872578	-	ENSG00000236800.1	ENST00000440750.1	RP11-534L6.2	RP11-534L6.2-001	NA	NA	NA	inter
CUST_14646_PI429285431	3.8382509	P	3.9316998	P	0.937279413057958	0	lncRNA	16316-1_{1..663}	lnc-KIAA1919-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1919-1:1	chr6	111616907	111617569	+	lnc-KIAA1919-1	lnc-KIAA1919-1:1	XLOC_005426	linc-WISP3-3	REV3L	NA	chr6:111620234-111627099	inter
CUST_22589_PI429285431	0.89218026	A	0.89110106	A	1.00074832429228	0	lncRNA	24173-1_{1..500}	lnc-TSPAN5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSPAN5-2:2	chr4	 98554629	 98555128	-	lnc-TSPAN5-2	lnc-TSPAN5-2:2	ENSG00000254044.1	RP11-681L8.1	C4orf37	NA	chr4:98544629-98564962	inner
LNCA_21_P0004972	1.9660089	A	2.3286695	A	0.777728978334854	0	lncRNA	TCONS_00012021	NA	NA	NA	NA	XLOC_005547	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005547), lincRNA [TCONS_00012021]"	chr6:169074570-169074629	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012021	TCONS_00012021	chr6	169074570	169074629	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2942_PI429285431	1.1745018	A	1.3219802	A	0.902827081594197	0	lncRNA	2923-1_{1..457}	"transcript_id ""ENST00000413567.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413567.1"" | genecode_v17"	chr7	137848186	137848642	+	ENSG00000225559.1	ENST00000413567.1	AC083867.4	AC083867.4-001	NA	NA	NA	inter
CUST_48287_PI429285431	7.2371554	P	7.748476	P	0.70157993850626	0	lncRNA	52146-2_{3001..4581}	hg19_lincRNAsTranscripts_TCONS_l2_00000110 range=chr1:16970894-16976875 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000110 range=chr1:16970894-16976875 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16973894	 16975474	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12901_PI429285431	8.274887	P	7.8754697	P	1.31897507328114	0	lncRNA	14530-1_{1..510}	lnc-TMEM30B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM30B-3:2	chr14	 62037447	 62037956	-	lnc-TMEM30B-3	lnc-TMEM30B-3:2	XLOC_011047	linc-TMEM30B	NA	NA	NA	inter
CUST_38180_PI429285431	3.287242	P	3.027048	A	1.19763974106967	0	lncRNA	39248-1_{1..3000}	n381441|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jca.3||1.1260000|-0.2826674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n381441|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jca.3||1.1260000|-0.2826674	chr10	 45642841	 45645840	+	NA	NA	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00"	NA	inter
CUST_42613_PI429285431	1.2285897	A	1.4116498	A	0.8808326795067	0	lncRNA	45475-1_{1..140}	ENST00000363243 ncrna:snoRNA chromosome:GRCh37:7:37459231:37459370:1 gene:ENSG00000200113 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363243 ncrna:snoRNA chromosome:GRCh37:7:37459231:37459370:1 gene:ENSG00000200113 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 37459231	 37459370	+	ENSG00000200113	ENST00000363243	NA	NA	ELMO1	NA	chr7:37449231-37469370	inner
CUST_39596_PI429285431	1.7363824	A	1.9980701	A	0.834111584305096	0	lncRNA	40539-1_{1..592}	n387605|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jpk.1||-1.0482100|-0.2420314	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387605|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jpk.1||-1.0482100|-0.2420314	chr6	  3313876	  3314467	+	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10chr6:3303876-3324670"	NA	inner
CUST_8552_PI429285431	13.284994	P	12.208451	P	2.10897647150489	0	lncRNA	10111-1_{1..424}	lnc-SERPINC1-1:27	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:27	chr1	173833813	173834236	-	lnc-SERPINC1-1	lnc-SERPINC1-1:27	ENSG00000234741	GAS5	DARS2	NA	chr1:173823813-173827682	inter
CUST_10365_PI429285431	0.9108616	A	0.90789866	A	1.0020558639034	0	lncRNA	11890-1_{1..230}	lnc-APIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APIP-1:1	chr11	 35095464	 35095693	-	lnc-APIP-1	lnc-APIP-1:1	XLOC_009415	linc-APIP-1	NA	NA	NA	inter
LNCA_21_P0003096	0.9117103	A	0.9253636	A	0.990580893915096	0	lncRNA	TCONS_00006396	NA	NA	NA	NA	XLOC_003017	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003017), lincRNA [TCONS_00006396]"	chr3:2139272-2139213	hs|3p26.3	Agilent_HUMAN_G3V2	TCONS_00006396	TCONS_00006396	chr3	  2139213	  2139272	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33861_PI429285431	1.068682	A	1.6876054	A	0.651156667078141	0	lncRNA	35405-1_{1..2765}	n340648|CR616125|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3110|NULL|-1.0864700|-0.1662360	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340648|CR616125|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3110|NULL|-1.0864700|-0.1662360	chr17	 37321337	 37324101	+	NA	NA	NA	NA	CACNB1	"hg19_refFlat_ARL5C:range=chr17:37313147-373220135'pad=0,hg19_refFlat_ARL5C:range=chr17:37313147-373220135'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50chr17:37329709-37334102"	NA	inner
CUST_49241_PI429285431	4.7413664	P	4.6669083	P	1.05296545051327	0	lncRNA	53063-1_{1..245}	hg19_lincRNAsTranscripts_TCONS_l2_00023040 range=chr5:102749590-102766255 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023040 range=chr5:102749590-102766255 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	102749590	102749834	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14202_PI429285431	0.91306376	A	1.0407445	A	0.915301696646132	0	lncRNA	15855-1_{1..3000}	lnc-PROP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PROP1-2:1	chr5	177389447	177392446	-	lnc-PROP1-2	lnc-PROP1-2:1	XLOC_005099	linc-FAM153A-2	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_20896_PI429285431	0.8925077	A	0.9004683	A	0.9944973280233	0	lncRNA	22527-1_{1..825}	lnc-CISD2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CISD2-4:1	chr4	104545438	104546262	+	lnc-CISD2-4	lnc-CISD2-4:1	ENSG00000251577.1	RP11-297P16.3	TACR3	NA	chr4:104535438-104555691	inner
CUST_50752_PI429285431	13.409365	P	12.852504	P	1.4710650056537	0	lncRNA	54416-1_{1..319}	hg19_lincRNAsTranscripts_TCONS_l2_00003853 range=chr10:134957244-134958417 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003853 range=chr10:134957244-134958417 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	134957244	134957562	-	NA	NA	NA	NA	KNDC1	NA	chr10:134957011-134968417	inter
CUST_31147_PI429285431	1.1691647	A	1.1149496	A	1.03829406445198	0	lncRNA	32942-1_{1..296}	n337476|EF100444|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394859|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394859|-1.3097500|-0.2333368	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337476|EF100444|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394859|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394859|-1.3097500|-0.2333368	chr6	144263761	144264056	-	NA	NA	NA	NA	PLAGL1	NA	chr6:144261437-144385735	inner
CUST_50434_PI429285431	7.197045	P	7.8483152	P	0.636719476343752	0	lncRNA	54138-1_{1..696}	hg19_lincRNAsTranscripts_TCONS_l2_00030185 range=chrX:44494093-44495332 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030185 range=chrX:44494093-44495332 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 44494093	 44494788	+	NA	NA	NA	NA	NA	"hg19_refFlat_HAS3:range=chr16:69143299-691523655'pad=0,hg19_refFlat_HAS3:range=chr16:69143299-691523655'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
CUST_21273_PI429285431	1.0960753	A	1.3955204	A	0.812564870948911	0	lncRNA	22898-1_{1..477}	lnc-NSUN7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NSUN7-1:1	chr4	 40827771	 40828247	+	lnc-NSUN7-1	lnc-NSUN7-1:1	ENSG00000250906.1	RP11-632F7.3	APBB2	"hg19_refFlat_APBB2:range=chr4:40818109-408292335'pad=0,hg19_refFlat_APBB2:range=chr4:40818109-408292335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_APBB2:range=chr4:40818109-410352715'pad=0,hg19_refFlat_APBB2:range=chr4:40818109-410352715'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr4:40817771-40838168"	NA	inner
CUST_27914_PI429285431	1.7091913	A	1.1414548	A	1.48219627040538	0	lncRNA	29516-1_{1..3000}	n325159|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129613|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129613|-1.0586500|-0.3378336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325159|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129613|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129613|-1.0586500|-0.3378336	chr2	118307982	118310981	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37820_PI429285431	5.709002	P	6.437683	P	0.603455377512117	0	lncRNA	38912-1_{1..460}	n346339|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1889|NULL|-1.2552900|-0.0624599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346339|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1889|NULL|-1.2552900|-0.0624599	chr7	 99578391	 99578850	+	NA	NA	NA	NA	AZGP1	NA	chr7:99568391-99573735	inter
CUST_27932_PI429285431	1.9341553	A	0.90250516	A	2.04436123435924	0	lncRNA	29534-1_{1..757}	n325177|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332149|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332149|-0.6955930|-0.2642007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325177|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332149|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332149|-0.6955930|-0.2642007	chr2	111965320	111966076	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013049	0.9136059	A	0.9202765	A	0.9953869652975	0	lncRNA	TCONS_l2_00024524	NA	NA	NA	NA	XLOC_l2_012807	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012807), lincRNA [TCONS_l2_00024524]"	chr6:167614008-167614067	hs|6q27	Agilent_HUMAN_G3V2	TCONS_l2_00024524	TCONS_l2_00024524	chr6	167614008	167614067	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008332	0.91310585	A	0.9191015	A	0.995852755775436	0	lncRNA	THC2697008	NA	NA	NA	NA	XLOC_010816	NA	NA	THC2697008	NA	"BROAD Institute lincRNA (XLOC_010816), lincRNA [TCONS_00022492]"	chr14:046325392-046325451	hs|14q21.2	Agilent_HUMAN_G3V2	THC2697008	THC2697008	chr14	 46325392	 46325451	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007061	0.91286975	A	0.91853094	A	0.99608365108899	0	lncRNA	TCONS_00018208	NA	NA	NA	NA	XLOC_008489	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008489), lincRNA [TCONS_00018208]"	chr10:60825493-60825552	hs|10q21.1	Agilent_HUMAN_G3V2	TCONS_00018208	TCONS_00018208	chr10	 60825493	 60825552	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003384	4.4023633	P	4.752078	P	0.784739268581583	0	lncRNA	ENST00000514327	NA	NA	NA	NA	XLOC_003631	NA	ENST00000514327	NA	NA	"BROAD Institute lincRNA (XLOC_003631), lincRNA [TCONS_00007582]"	chr4:105253407-105253466	hs|4q24	Agilent_HUMAN_G3V2	ENST00000514327	ENST00000514327	chr4	105253407	105253466	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47123_PI429285431	12.777324	P	13.104763	P	0.796949934460195	0	lncRNA	51204-1_{1..2265}	"gi|340805845|ref|NR_040515.1| Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta (NFKBIB), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|340805845|ref|NR_040515.1| Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta (NFKBIB), transcript variant 3, non-coding RNA"	Chr19	 39390570	 39392834	+	4793	NR_040515.1	NA	NA	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-57.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80"	NA	inter
CUST_39914_PI429285431	3.3098857	P	2.0915885	A	2.32671934569041	0	lncRNA	40795-1_{1..3000}	n406663|NR_024199|lncRNA|Homosapiens||RefGeneNoncode|NR_024199||7.5661600|-0.3730260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406663|NR_024199|lncRNA|Homosapiens||RefGeneNoncode|NR_024199||7.5661600|-0.3730260	chr7	107384278	107387277	+	NA	NA	NA	NA	CBLL1	NA	chr7:107384279-107402083	inter
CUST_40720_PI429285431	6.3182545	P	5.895257	P	1.34071026830447	0	lncRNA	41455-2_{3001..3690}	n410286|NR_037177_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_7||-0.8256220|-0.3295413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410286|NR_037177_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_7||-0.8256220|-0.3295413	chr6	  4309476	  4310165	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28594_PI429285431	1.5581839	A	2.1918776	A	0.644524140270026	0	lncRNA	30274-1_{1..465}	n325955|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048310|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048310|-0.9784360|-0.4347337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325955|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048310|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048310|-0.9784360|-0.4347337	chr10	 69663013	 69663477	-	NA	NA	NA	NA	HERC4	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60chr10:69681656-69682142"	NA	inner
CUST_47386_PI429285431	0.88985413	A	1.1641947	A	0.82682816010176	0	lncRNA	51434-1_{1..825}	"gi|223556001|ref|NR_026838.1| Homo sapiens Down syndrome critical region gene 8 (DSCR8), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223556001|ref|NR_026838.1| Homo sapiens Down syndrome critical region gene 8 (DSCR8), transcript variant 4, non-coding RNA"	Chr21	 39493545	 39494369	+	84677	NR_026838.1	NA	NA	NA	NA	NA	inter
CUST_17814_PI429285431	0.89313984	A	0.90925515	A	0.988891874257751	0	lncRNA	19550-1_{1..254}	lnc-UBE2CBP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBE2CBP-1:1	chr6	 83387568	 83387821	-	lnc-UBE2CBP-1	lnc-UBE2CBP-1:1	XLOC_005775	linc-IBTK	NA	NA	NA	inter
CUST_41589_PI429285431	1.0713083	A	0.91133463	A	1.11726674713646	0	lncRNA	42919-1_{1..78}	ENST00000578045 ncrna:miRNA chromosome:GRCh37:1:10027439:10027516:1 gene:ENSG00000265521 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578045 ncrna:miRNA chromosome:GRCh37:1:10027439:10027516:1 gene:ENSG00000265521 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 10027439	 10027516	+	ENSG00000265521	ENST00000578045	NA	NA	NMNAT1	NA	chr1:10017439-10037516	inner
CUST_38841_PI429285431	14.761694	P	14.749217	P	1.00868590280305	0	lncRNA	39832-1_{1..335}	n384656|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jwt.1||1.0248100|-0.1639734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384656|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jwt.1||1.0248100|-0.1639734	chr5	 68765679	 68766013	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6297_PI429285431	7.827674	P	8.28101	P	0.730352072326509	0	lncRNA	6221-1_{1..272}	"transcript_id ""ENST00000586506.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586506.1"" | genecode_v17"	chr19	  1748055	  1748326	+	ENSG00000267073.1	ENST00000586506.1	AC005256.1	AC005256.1-001	ONECUT3	NA	chr19:1753662-1758740	inter
CUST_16259_PI429285431	1.6773844	A	2.8029487	A	0.45832271683638	0	lncRNA	17962-1_{1..509}	lnc-MAPKAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAPKAP1-1:1	chr9	128507695	128508203	-	lnc-MAPKAP1-1	lnc-MAPKAP1-1:1	XLOC_007852	linc-MAPKAP1-4	PBX3	NA	chr9:128509617-128518019	inter
CUST_41726_PI429285431	11.851272	P	11.2178	P	1.55129385946339	0	lncRNA	43249-1_{1..73}	ENST00000579980 ncrna:miRNA chromosome:GRCh37:21:15357768:15357840:1 gene:ENSG00000266838 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579980 ncrna:miRNA chromosome:GRCh37:21:15357768:15357840:1 gene:ENSG00000266838 gene_biotype:miRNA transcript_biotype:miRNA	chr21	 15357768	 15357840	+	ENSG00000266838	ENST00000579980	NA	NA	NA	NA	NA	inter
CUST_6554_PI429285431	3.9181342	P	4.038443	P	0.919990711195593	0	lncRNA	6502-1_{1..493}	"transcript_id ""ENST00000600007.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600007.1"" | genecode_v17"	chr19	 49521504	 49521996	-	ENSG00000268655.1	ENST00000600007.1	CTB-60B18.10	CTB-60B18.10-001	RUVBL2	NA	chr19:49511504-49519182	inter
LNCA_21_P0001438	0.8996288	A	0.8991603	A	1.00032479218766	0	lncRNA	TCONS_00001328	NA	NA	NA	NA	XLOC_000618	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000618), lincRNA [TCONS_00001328]"	chr1:232994186-232994245	hs|1q42.2	Agilent_HUMAN_G3V2	TCONS_00001328	TCONS_00001328	chr1	232994186	232994245	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001381	6.640476	P	6.623557	P	1.01179639220304	0	lncRNA	TCONS_00001181	NA	NA	NA	NA	XLOC_000447	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000447), lincRNA [TCONS_00001181]"	chr1:163393218-163393277	hs|1q23.3	Agilent_HUMAN_G3V2	TCONS_00001181	TCONS_00001181	chr1	163393218	163393277	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50835_PI429285431	5.1434283	P	6.4373755	P	0.407833672362912	0	lncRNA	54480-1_{1..827}	hg19_lincRNAsTranscripts_TCONS_l2_00004578 range=chr11:65267805-65268720 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004578 range=chr11:65267805-65268720 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65267805	 65268631	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30185_PI429285431	0.9005751	A	1.2436363	A	0.788366730351337	0	lncRNA	31959-1_{1..215}	n334886|AJ459835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248092_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248092_06|-1.2404900|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334886|AJ459835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248092_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248092_06|-1.2404900|-1.0000000	chr6	   944913	   945127	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2946_PI429285431	4.3054156	M	4.517116	P	0.863518864237408	0	lncRNA	2927-1_{1..573}	"transcript_id ""ENST00000492054.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000492054.1"" | genecode_v17"	chr7	149737610	149738182	+	ENSG00000241449.1	ENST00000492054.1	RP11-545G3.1	RP11-545G3.1-001	NA	NA	NA	inter
CUST_49000_PI429285431	6.506445	P	6.3969536	P	1.07884783820502	0	lncRNA	52832-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00019720 range=chr3:197332348-197354685 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019720 range=chr3:197332348-197354685 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	197332348	197335347	-	NA	NA	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_51920_PI429285431	0.92097163	A	0.9052491	A	1.01095762715075	0	lncRNA	55460-3_{6001..8562}	hg19_lincRNAsTranscripts_TCONS_l2_00016674 range=chr20:54129021-54201563 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016674 range=chr20:54129021-54201563 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	 54135021	 54137582	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00"	NA	inter
CUST_2655_PI429285431	3.4652767	P	4.1483603	P	0.6228326153925	0	lncRNA	2641-1_{1..402}	"transcript_id ""ENST00000421237.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421237.1"" | genecode_v17"	chr6	143267184	143267585	-	ENSG00000224460.1	ENST00000421237.1	RP11-439L18.2	RP11-439L18.2-001	HIVEP2	NA	chr6:143257184-143266338	inter
CUST_48810_PI429285431	2.7075043	A	3.3166633	P	0.655578751528681	0	lncRNA	52648-1_{1..1836}	hg19_lincRNAsTranscripts_TCONS_l2_00014331 range=chr2:242626503-242633574 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014331 range=chr2:242626503-242633574 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	242626503	242628338	+	NA	NA	NA	NA	ING5	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-58.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40chr2:242641456-242643574"	NA	inter
CUST_46231_PI429285431	5.5501075	P	5.2783237	P	1.2072996539102	0	lncRNA	50470-1_{1..2627}	"gi|84872073|ref|NR_002793.1| Homo sapiens transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 3 (TPTE2P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|84872073|ref|NR_002793.1| Homo sapiens transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 3 (TPTE2P3), non-coding RNA"	NA	NA	NA	NA	NA	NR_002793.1	NA	NA	NA	NA	NA	Unknown
CUST_17274_PI429285431	2.1934013	A	1.0688865	A	2.18028208041919	0	lncRNA	18992-1_{1..270}	lnc-AL445989.1-18:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL445989.1-18:1	chr13	 68172858	 68173127	+	lnc-AL445989.1-18	lnc-AL445989.1-18:1	XLOC_010418	linc-C13orf34-7	NA	NA	NA	inter
CUST_21992_PI429285431	0.891796	A	0.8861373	A	1.00393001428318	0	lncRNA	23600-1_{1..548}	lnc-PIK3CA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-PIK3CA-1:1	chr3	178174882	178175429	+	lnc-PIK3CA-1	lnc-PIK3CA-1:1	ENSG00000223941.1	KCNMB2-IT1	NA	NA	NA	inter
CUST_26570_PI429285431	5.5806203	P	5.7198606	P	0.907997166150517	0	lncRNA	28074-1_{1..405}	lnc-ANKRD11-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD11-1:2	chr16	 89560128	 89560532	-	lnc-ANKRD11-1	lnc-ANKRD11-1:2	ENSG00000261118.1	RP11-104N10.1	ANKRD11	NA	chr16:89550128-89556969	inter
CUST_43154_PI429285431	0.8913662	A	0.8903166	A	1.00072779199288	0	lncRNA	47969-1_{1..480}	ENST00000591202 havana:sense_intronic chromosome:GRCh37:17:34084218:34085344:-1 gene:ENSG00000266911 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000591202 havana:sense_intronic chromosome:GRCh37:17:34084218:34085344:-1 gene:ENSG00000266911 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr17	 34084218	 34084697	-	ENSG00000266911	ENST00000591202	NA	NA	GAS2L2	NA	chr17:34074218-34079897	inter
CUST_39394_PI429285431	1.7189448	A	2.5403116	A	0.56590555332172	0	lncRNA	40357-1_{1..1279}	n386562|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010nzo.1||-0.9995770|-0.1055192	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386562|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010nzo.1||-0.9995770|-0.1055192	chr1	  3816967	  3818245	+	NA	NA	NA	NA	C1orf174	NA	chr1:3806967-3816857	inter
CUST_1434_PI429285431	0.8874905	A	0.8906286	A	0.997827198790127	0	lncRNA	1423-1_{1..464}	"transcript_id ""ENST00000593799.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593799.1"" | genecode_v17"	chr3	108855733	108856196	+	ENSG00000241224.2	ENST00000593799.1	RP11-59E19.1	RP11-59E19.1-004	NA	NA	NA	inter
CUST_20837_PI429285431	1.6488878	A	1.4779258	A	1.12580893239731	0	lncRNA	22468-1_{1..193}	lnc-RIOK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RIOK2-1:1	chr5	 96537546	 96537738	-	lnc-RIOK2-1	lnc-RIOK2-1:1	ENSG00000248758.1	CTD-2215E18.2	NA	NA	NA	inter
CUST_30447_PI429285431	2.7467961	A	2.6502202	A	1.0692327260531	0	lncRNA	32227-1_{1..270}	n335586|CR592857|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000272052|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000272052|-0.2449660|-0.2062494	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335586|CR592857|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000272052|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000272052|-0.2449660|-0.2062494	chr15	 43891125	 43891394	+	NA	NA	NA	NA	STRC	NA	chr15:43891761-43901600	inter
CUST_33431_PI429285431	0.88958913	A	0.8878951	A	1.00117490177524	0	lncRNA	35009-1_{1..643}	n340161|AF147419|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2621|NULL|-0.9887390|-0.3396130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340161|AF147419|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2621|NULL|-0.9887390|-0.3396130	chr4	 87963227	 87963869	+	NA	NA	NA	NA	AFF1	NA	chr4:87953227-87973870	inner
CUST_33736_PI429285431	0.9147935	A	2.134124	A	0.429481978262643	0	lncRNA	35293-1_{1..993}	n340514|BC033345|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2976|NULL|-1.1193700|-0.2978565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340514|BC033345|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2976|NULL|-1.1193700|-0.2978565	chr17	 14918121	 14919113	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3233749	0.8973683	A	0.89252734	A	1.00336113375994	0	lncRNA	XR_108302	XR_108302	XR_108302	100128751	Hs.655565	LOC100128751	INM04	NA	THC2478856	NA	"PREDICTED: Homo sapiens INM04 (LOC100128751), miscRNA [XR_108302]"	chr1:167639829-167639888	hs|1q24.2	Agilent_HUMAN_G3V2	XR_108302	XR_108302	chr1	167639829	167639888	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31347_PI429285431	0.9082331	A	0.9128899	A	0.996777356109609	0	lncRNA	33129-1_{1..2048}	n337815|AK055748|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|198|NULL|-0.5479050|-0.4371023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337815|AK055748|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|198|NULL|-0.5479050|-0.4371023	chr15	 60737701	 60739748	-	NA	NA	NA	NA	NARG2	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.91;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-24.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60chr15:60727701-60749750"	NA	inner
CUST_6103_PI429285431	7.611486	P	7.888422	P	0.825342021044232	0	lncRNA	6029-1_{1..764}	"transcript_id ""ENST00000580867.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580867.1"" | genecode_v17"	chr18	 14969605	 14970368	-	ENSG00000264301.1	ENST00000580867.1	RP11-527H14.3	RP11-527H14.3-001	NA	NA	NA	inter
CUST_42050_PI429285431	12.14354	P	12.246542	P	0.931093529059625	0	lncRNA	43952-1_{1..84}	ENST00000580166 ncrna:miRNA chromosome:GRCh37:3:139213460:139213543:1 gene:ENSG00000263538 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580166 ncrna:miRNA chromosome:GRCh37:3:139213460:139213543:1 gene:ENSG00000263538 gene_biotype:miRNA transcript_biotype:miRNA	chr3	139213460	139213543	+	ENSG00000263538	ENST00000580166	NA	NA	RBP1	NA	chr3:139212582-139223543	inter
CUST_50565_PI429285431	1.693157	A	0.89268947	A	1.74166545162211	0	lncRNA	54257-1_{1..306}	hg19_lincRNAsTranscripts_TCONS_l2_00030902 range=chrY:16017648-16018927 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030902 range=chrY:16017648-16018927 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrY	 16017648	 16017953	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48757_PI429285431	0.8988965	A	0.90575397	A	0.995258042752682	0	lncRNA	52594-1_{1..539}	hg19_lincRNAsTranscripts_TCONS_l2_00014029 range=chr2:151422644-151432787 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014029 range=chr2:151422644-151432787 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	151422644	151423182	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38663_PI429285431	2.3771417	A	2.7116656	A	0.793045804394072	0	lncRNA	39664-1_{1..2000}	n383943|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ybq.1||0.0966076|-0.1693548	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383943|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ybq.1||0.0966076|-0.1693548	chr20	 60292561	 60294560	-	NA	NA	NA	NA	CDH4	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-65.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50chr20:60282561-60304804"	NA	inner
CUST_23105_PI429285431	1.5793341	A	1.3927835	A	1.13803947416927	0	lncRNA	24676-1_{1..763}	lnc-MARCKSL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MARCKSL1-1:1	chr1	 32788125	 32788887	-	lnc-MARCKSL1-1	lnc-MARCKSL1-1:1	ENSG00000235359.1	RP4-811H24.3	HDAC1	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60chr1:32778125-32798162"	NA	inner
CUST_50769_PI429285431	5.7939625	P	6.125513	P	0.794681960314301	0	lncRNA	54429-3_{6001..7045}	hg19_lincRNAsTranscripts_TCONS_l2_00004571 range=chr11:65266513-65273999 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004571 range=chr11:65266513-65273999 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65272513	 65273557	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36774_PI429285431	5.6286135	P	5.6068096	P	1.01522809543169	0	lncRNA	37946-1_{1..874}	n345253|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_802|NULL|-1.3659900|-0.2433711	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345253|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_802|NULL|-1.3659900|-0.2433711	chr14	 35899235	 35900108	-	NA	NA	NA	NA	NA	"hg19_refFlat_DNAJC8:range=chr1:28527759-285595095'pad=0,hg19_refFlat_DNAJC8:range=chr1:28527759-285595095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20"	NA	inter
CUST_27157_PI429285431	0.90833646	A	0.913327	A	0.996546797335527	0	lncRNA	28693-1_{1..806}	n324281|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043280|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043280|-0.2776310|-0.2552438	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324281|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043280|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043280|-0.2776310|-0.2552438	chr6	170846325	170847130	+	NA	NA	NA	NA	PSMB1	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.66;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PSMB1:range=chr6:170844308-1708623305'pad=0,hg19_refFlat_PSMB1:range=chr6:170844308-1708623305'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr6:170844204-170857963"	NA	inner
CUST_11376_PI429285431	5.7473984	P	5.94561	P	0.87163038818161	0	lncRNA	12941-1_{1..588}	lnc-BMP6-10:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BMP6-10:2	chr6	  9046653	  9047240	+	lnc-BMP6-10	lnc-BMP6-10:2	XLOC_005165	linc-GCNT2-3	NA	NA	NA	inter
CUST_3229_PI429285431	1.3701417	A	0.89587575	A	1.38921120281834	0	lncRNA	3208-1_{1..227}	"transcript_id ""ENST00000522531.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522531.1"" | genecode_v17"	chr8	 93681064	 93681290	+	ENSG00000253177.1	ENST00000522531.1	RP11-100L22.1	RP11-100L22.1-002	NA	NA	NA	inter
CUST_24069_PI429285431	0.8919251	A	2.2119246	A	0.400535077609667	0	lncRNA	25619-1_{1..575}	lnc-CXXC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CXXC4-1:1	chr4	105887765	105888339	-	lnc-CXXC4-1	lnc-CXXC4-1:1	ENSG00000248242.1	RP11-556I14.2	NA	NA	NA	inter
LNCA_21_P0004778	2.409496	A	3.298785	P	0.539880120548783	0	lncRNA	XR_110178	XR_110178	XR_110178	NA	NA	LOC100507406	uncharacterized LOC100507406	ENST00000419220	THC2657284	NA	"PREDICTED: Homo sapiens hypothetical LOC100507406, transcript variant 2 (LOC100507406), miscRNA [XR_110178]"	chr6:138059853-138051683	hs|6q23.3	Agilent_HUMAN_G3V2	XR_110178	XR_110178	chr6	138051683	138059853	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31035_PI429285431	4.720997	P	5.1698093	P	0.732645751047094	0	lncRNA	32824-1_{1..772}	n337248|BC127643|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389271|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389271|1.3185000|-0.0814075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337248|BC127643|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389271|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389271|1.3185000|-0.0814075	chr14	 24779563	 24780334	+	NA	NA	NA	NA	C14orf21	NA	chr14:24769563-24774374	inner
CUST_44694_PI429285431	1.1175631	A	0.89994955	A	1.16280852211284	0	lncRNA	49251-2_{3001..4367}	"gi|254281233|ref|NR_028077.1| Homo sapiens zinc finger and SCAN domain containing 12 (ZSCAN12), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254281233|ref|NR_028077.1| Homo sapiens zinc finger and SCAN domain containing 12 (ZSCAN12), transcript variant 2, non-coding RNA"	Chr6	 28349598	 28350964	-	9753	NR_028077.1	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10"	NA	inter
CUST_1128_PI429285431	5.753105	P	6.494812	P	0.598031341510882	0	lncRNA	1117-1_{1..806}	"transcript_id ""ENST00000450667.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450667.1"" | genecode_v17"	chr2	147595317	147596122	+	ENSG00000231040.1	ENST00000450667.1	AC103881.1	AC103881.1-002	NA	NA	NA	inter
CUST_22812_PI429285431	1.3815979	A	1.8407176	A	0.727429984653168	0	lncRNA	24392-1_{1..317}	lnc-EBF3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EBF3-1:1	chr10	131499394	131499710	-	lnc-EBF3-1	lnc-EBF3-1:1	ENSG00000237224.1	RP11-109A6.2	MGMT	NA	chr10:131489394-131509526	inner
CUST_4326_PI429285431	1.6071881	A	0.8898516	A	1.64414381659371	0	lncRNA	4281-1_{1..554}	"transcript_id ""ENST00000551726.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551726.1"" | genecode_v17"	chr12	 74678816	 74679369	-	ENSG00000251138.2	ENST00000551726.1	RP11-81H3.2	RP11-81H3.2-005	NA	NA	NA	inter
CUST_10067_PI429285431	1.9339609	A	3.0347066	P	0.466275425098515	0	lncRNA	11591-1_{1..288}	lnc-RP11-664D7.4.1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-664D7.4.1-3:4	chr8	 69913619	 69913906	-	lnc-RP11-664D7.4.1-3	lnc-RP11-664D7.4.1-3:4	XLOC_007115	linc-CPA6-1	NA	NA	NA	inter
CUST_7908_PI429285431	1.0452074	A	0.89155495	A	1.11238211177954	0	lncRNA	9523-1_{1..3000}	lnc-P4HA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-P4HA1-1:1	chr10	 74859842	 74862841	-	lnc-P4HA1-1	lnc-P4HA1-1:1	ENSG00000251086	XLOC_008852	P4HA1	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-63.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90chr10:74849842-74856732"	NA	inter
CUST_41927_PI429285431	0.90554094	A	0.90327746	A	1.00157015618665	0	lncRNA	43674-1_{1..68}	ENST00000362275 ncrna:miRNA chromosome:GRCh37:4:113569160:113569227:-1 gene:ENSG00000199145 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362275 ncrna:miRNA chromosome:GRCh37:4:113569160:113569227:-1 gene:ENSG00000199145 gene_biotype:miRNA transcript_biotype:miRNA	chr4	113569160	113569227	-	ENSG00000199145	ENST00000362275	NA	NA	LARP7	NA	chr4:113559160-113578742	inner
CUST_28030_PI429285431	1.0554805	A	1.1158638	A	0.959009292707834	0	lncRNA	29645-1_{1..3000}	n325292|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327085|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327085|0.2861310|-0.3701586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325292|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327085|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327085|0.2861310|-0.3701586	chr2	 64265715	 64268714	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20"	NA	inter
LNCA_21_P0009984	2.273102	A	2.2894802	A	0.988711693351283	0	lncRNA	AK128288	NA	AK128288	NA	Hs.534781	LOC284757	uncharacterized LOC284757	NA	THC2481282	NA	"BROAD Institute lincRNA (XLOC_013591), lincRNA [TCONS_00028249]"	chr20:58899541-58899597	hs|20q13.33	Agilent_HUMAN_G3V2	AK128288	AK128288	chr20	 58899541	 58899597	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35211_PI429285431	5.7040253	P	5.1324553	P	1.48613996950946	0	lncRNA	36611-1_{1..1161}	n342197|CR604349|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4687|NULL|0.0203483|-0.3120706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342197|CR604349|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4687|NULL|0.0203483|-0.3120706	chr17	 37071929	 37073089	+	NA	NA	NA	NA	LASP1	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60chr17:37061929-37078023"	NA	inter
LNCA_21_P0004309	6.7165294	P	6.8801427	P	0.892786241841934	0	lncRNA	TCONS_00010119	NA	NA	NA	NA	XLOC_004585	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004585), lincRNA [TCONS_00010119]"	chr5:141615604-141615806	hs|5q31.3	Agilent_HUMAN_G3V2	TCONS_00010119	TCONS_00010119	chr5	141615604	141615806	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19023_PI429285431	2.304727	A	1.7180343	A	1.5018000032686	0	lncRNA	20713-1_{1..3000}	lnc-AC130352.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC130352.1-2:1	chr8	 12310554	 12313553	+	lnc-AC130352.1-2	lnc-AC130352.1-2:1	ENSG00000215248	AC087203.1	LOC100127885	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20chr8:12300554-12322147"	NA	inter
CUST_44871_PI429285431	9.22947	P	9.213174	P	1.0113595617905	0	lncRNA	49395-1_{1..2270}	"gi|190194405|ref|NR_015449.1| Homo sapiens ring finger protein 216 pseudogene 1 (RNF216P1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|190194405|ref|NR_015449.1| Homo sapiens ring finger protein 216 pseudogene 1 (RNF216P1), transcript variant 2, non-coding RNA"	Chr7	  5013616	  5015885	+	441191	NR_015449.1	NA	NA	NA	NA	NA	inter
CUST_51601_PI429285431	0.89580417	A	0.90518546	A	0.99351848153385	0	lncRNA	55167-1_{1..2315}	hg19_lincRNAsTranscripts_TCONS_l2_00011163 range=chr17:25985468-25995444 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011163 range=chr17:25985468-25995444 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 25985468	 25987782	-	NA	NA	NA	NA	LGALS9	NA	chr17:25975468-25976586	inter
CUST_20791_PI429285431	4.191513	P	4.0636454	P	1.09267745655353	0	lncRNA	22424-1_{1..616}	lnc-SETDB1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SETDB1-1:2	chr1	150938308	150938923	+	lnc-SETDB1-1	lnc-SETDB1-1:2	ENSG00000259357.1	RP11-316M1.12	SETDB1	NA	chr1:150928308-150937220	inner
CUST_39055_PI429285431	1.1796349	A	2.7041183	A	0.347604002661537	0	lncRNA	40032-2_{3001..4715}	n385495|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zqo.1||4.9267300|-0.2998993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385495|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zqo.1||4.9267300|-0.2998993	chr9	 27377227	 27378941	-	NA	NA	NA	NA	MOBKL2B	NA	chr9:27364227-27388942	inner
CUST_5052_PI429285431	3.1544359	P	3.7258127	P	0.672974245711564	0	lncRNA	4992-1_{1..539}	"transcript_id ""ENST00000553270.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553270.1"" | genecode_v17"	chr14	102095321	102095859	-	ENSG00000258919.1	ENST00000553270.1	RP11-1029J19.4	RP11-1029J19.4-001	NA	NA	NA	inter
CUST_15991_PI429285431	0.9006858	A	0.91745764	A	0.988441959714892	0	lncRNA	17688-1_{1..406}	lnc-CDYL-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDYL-3:1	chr6	  4467041	  4467446	+	lnc-CDYL-3	lnc-CDYL-3:1	XLOC_005140	linc-CDYL-3	NA	NA	NA	inter
CUST_28682_PI429285431	0.8953279	A	0.90875936	A	0.990733225042197	0	lncRNA	30378-1_{1..335}	n326066|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046740|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046740|-1.1324100|-0.2641654	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326066|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046740|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046740|-1.1324100|-0.2641654	chr10	 10447148	 10447482	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24247_PI429285431	10.418941	P	10.551073	P	0.912481996793266	0	lncRNA	25798-1_{1..669}	lnc-PAPPA-AS1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAPPA-AS1-2:1	chr9	118969998	118970666	-	lnc-PAPPA-AS1-2	lnc-PAPPA-AS1-2:1	ENSG00000224684.1	RP11-58C3.2	PAPPA	NA	chr9:118959998-118980488	inner
LNCA_21_P0011921	6.7703505	P	6.6207643	P	1.10925126621381	0	lncRNA	TCONS_l2_00014600	NA	NA	NA	NA	XLOC_l2_008040	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008040), lincRNA [TCONS_l2_00014600]"	chr2:62785287-62785228	hs|2p15	Agilent_HUMAN_G3V2	TCONS_l2_00014600	TCONS_l2_00014600	chr2	 62785228	 62785287	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43972_PI429285431	9.3156395	P	8.282778	P	2.04607850469384	0	lncRNA	48674-2_{3001..4281}	"gi|388556551|ref|NR_049789.1| Homo sapiens pleckstrin homology domain containing, family B (evectins) member 2 (PLEKHB2), transcript variant 11, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388556551|ref|NR_049789.1| Homo sapiens pleckstrin homology domain containing, family B (evectins) member 2 (PLEKHB2), transcript variant 11, non-coding RNA"	Chr2	131865420	131866700	+	55041	NR_049789.1	NA	NA	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.04;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60"	NA	inter
CUST_21783_PI429285431	1.8127801	A	2.6559186	A	0.557429593061099	0	lncRNA	23393-1_{1..609}	lnc-NRIP2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NRIP2-6:1	chr12	  2781295	  2781903	-	lnc-NRIP2-6	lnc-NRIP2-6:1	ENSG00000256271.1	CACNA1C-AS2	CACNA1C	"hg19_refFlat_CACNA1D:range=chr3:53529194-538454335'pad=0,hg19_refFlat_CACNA1D:range=chr3:53529194-538454335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CACNA1C:range=chr12:2162729-28003655'pad=0,hg19_refFlat_CACNA1C:range=chr12:2162729-28003655'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_CACNA1S:range=chr1:201008959-2010814675'pad=0,hg19_refFlat_CACNA1S:range=chr1:201008959-2010814675'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20chr12:2771295-2791386"	NA	inner
CUST_16377_PI429285431	1.6684854	A	1.7613959	A	0.937629262052498	0	lncRNA	18075-1_{1..395}	lnc-GPCPD1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPCPD1-1:3	chr20	  5490522	  5490916	-	lnc-GPCPD1-1	lnc-GPCPD1-1:3	XLOC_013643	linc-PROKR2-4	NA	NA	NA	inter
CUST_50081_PI429285431	0.90714586	A	0.9157081	A	0.994082684170203	0	lncRNA	53815-1_{1..416}	hg19_lincRNAsTranscripts_TCONS_l2_00028295 range=chr8:90624174-90629555 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028295 range=chr8:90624174-90629555 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 90624174	 90624589	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45470_PI429285431	1.2807376	A	1.4640843	A	0.880657714205348	0	lncRNA	49885-1_{1..964}	"gi|375493562|ref|NR_046340.1| Homo sapiens chromosome 9 open reading frame 173 (C9orf173), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375493562|ref|NR_046340.1| Homo sapiens chromosome 9 open reading frame 173 (C9orf173), transcript variant 6, non-coding RNA"	Chr9	140145713	140146676	+	441476	NR_046340.1	NA	NA	NA	NA	NA	inter
CUST_14611_PI429285431	0.90684336	A	1.4068487	A	0.707104163902148	0	lncRNA	16279-1_{1..655}	lnc-IKZF2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IKZF2-1:2	chr2	214032117	214032771	-	lnc-IKZF2-1	lnc-IKZF2-1:2	XLOC_002476	linc-IKZF2-3	NA	NA	NA	inter
CUST_22849_PI429285431	3.0694444	P	2.5949626	A	1.38941906633955	0	lncRNA	24427-2_{3001..4574}	lnc-HDAC9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-HDAC9-1:1	chr7	 19040466	 19042039	+	lnc-HDAC9-1	lnc-HDAC9-1:1	ENSG00000260214.1	GS1-465N13.1	HDAC9	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40chr7:19027466-19036993"	NA	inter
LNCA_21_P0010819	0.91397744	A	0.92160964	A	0.994723730753734	0	lncRNA	TCONS_l2_00002977	NA	NA	NA	NA	XLOC_l2_001549	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001549), lincRNA [TCONS_l2_00002977]"	chr10:37598080-37604654	hs|10p11.21	Agilent_HUMAN_G3V2	TCONS_l2_00002977	TCONS_l2_00002977	chr10	 37598080	 37604654	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14188_PI429285431	0.9090484	A	0.92093986	A	0.991791344554896	0	lncRNA	15840-1_{1..304}	lnc-SPTLC3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPTLC3-1:4	chr20	 12948188	 12948491	+	lnc-SPTLC3-1	lnc-SPTLC3-1:4	XLOC_013465	linc-SPTLC3-1	NA	NA	NA	inter
CUST_3769_PI429285431	11.3805275	P	11.460111	P	0.946330809023936	0	lncRNA	3737-1_{1..380}	"transcript_id ""ENST00000412362.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412362.1"" | genecode_v17"	chr10	 92754377	 92754756	+	ENSG00000225519.1	ENST00000412362.1	RP11-236B18.2	RP11-236B18.2-001	NA	NA	NA	inter
LNCA_21_P0003232	4.2784963	P	3.815652	P	1.37825639936135	0	lncRNA	TCONS_00006864	NA	NA	NA	NA	XLOC_002675	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002675), lincRNA [TCONS_00006864]"	chr3:58429435-58429494	hs|3p14.3	Agilent_HUMAN_G3V2	TCONS_00006864	TCONS_00006864	chr3	 58429435	 58429494	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014181	0.91161513	A	2.0905597	A	0.441674495055979	0	lncRNA	XR_108737	XR_108737	XR_108737	NA	Hs.729857	LOC100505863	uncharacterized LOC100505863	NA	THC2505878	NA	"PREDICTED: Homo sapiens hypothetical LOC100505863 (LOC100505863), miscRNA [XR_108737]"	chr7:6748606-6748665	hs|7p22.1	Agilent_HUMAN_G3V2	XR_108737	XR_108737	chr7	  6748606	  6748665	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51261_PI429285431	4.4246254	P	4.4540186	P	0.979832330082793	0	lncRNA	54868-1_{1..793}	hg19_lincRNAsTranscripts_TCONS_l2_00008960 range=chr15:28952665-28954493 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008960 range=chr15:28952665-28954493 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 28952665	 28953457	-	NA	NA	NA	NA	LOC653720	NA	chr15:28947100-28964493	inter
CUST_35142_PI429285431	1.7964982	A	2.4624054	A	0.63029223744224	0	lncRNA	36544-1_{1..930}	n342113|X51619|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4595|NULL|3.2420700|-0.1602790	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342113|X51619|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4595|NULL|3.2420700|-0.1602790	chr6	117639373	117640302	-	NA	NA	NA	NA	DCBLD1	NA	chr6:117803820-117891021	inner
CUST_18189_PI429285431	4.0968003	P	4.234872	P	0.908732952522699	0	lncRNA	19925-1_{1..2403}	lnc-DLK1-11:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-DLK1-11:3	chr14	101537124	101539526	+	lnc-DLK1-11	lnc-DLK1-11:3	ENSG00000223403	AL132709.7	NA	NA	NA	inter
CUST_43454_PI429285431	6.1626396	P	5.8057227	P	1.28068609100668	0	lncRNA	48259-1_{1..3000}	"gi|371123633|ref|NR_045791.1| Homo sapiens NOP2/Sun domain family, member 4 (NSUN4), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371123633|ref|NR_045791.1| Homo sapiens NOP2/Sun domain family, member 4 (NSUN4), transcript variant 6, non-coding RNA"	Chr1	 46805849	 46808848	+	387338	NR_045791.1	NA	NA	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10"	NA	inter
CUST_35306_PI429285431	7.3756466	P	7.508416	P	0.912078940329688	0	lncRNA	36709-1_{1..1268}	n342328|CR615358|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4820|NULL|1.0652200|-0.2779719	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342328|CR615358|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4820|NULL|1.0652200|-0.2779719	chr19	 16741574	 16742841	-	NA	NA	NA	NA	TMEM38A	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30chr19:16771938-16780941"	NA	inner
CUST_18808_PI429285431	6.452996	P	6.526651	P	0.950227589120362	0	lncRNA	20503-1_{1..920}	lnc-SPDYE1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPDYE1-1:1	chr7	 44065583	 44066502	+	lnc-SPDYE1-1	lnc-SPDYE1-1:1	ENSG00000250121	AC017116.1	NA	NA	NA	inter
CUST_39412_PI429285431	0.9223483	A	0.92897964	A	0.995414053090055	0	lncRNA	40372-2_{3001..3110}	n386653|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ree.1||-1.1192800|-0.1737375	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386653|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ree.1||-1.1192800|-0.1737375	chr11	 32460584	 32460693	+	NA	NA	NA	NA	WT1	NA	chr11:32447584-32457081	inter
CUST_41526_PI429285431	6.5788083	P	6.6173534	P	0.973636325615195	0	lncRNA	42773-1_{1..98}	ENST00000580636 ncrna:miRNA chromosome:GRCh37:8:94928250:94928347:-1 gene:ENSG00000264448 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580636 ncrna:miRNA chromosome:GRCh37:8:94928250:94928347:-1 gene:ENSG00000264448 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 94928250	 94928347	-	ENSG00000264448	ENST00000580636	NA	NA	PDP1	NA	chr8:94929083-94938296	inter
CUST_39583_PI429285431	1.6214143	A	1.8018432	A	0.882440615791593	0	lncRNA	40526-1_{1..2000}	n387572|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ihr.1||-1.1585500|-0.2629207	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387572|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ihr.1||-1.1585500|-0.2629207	chr6	  1386143	  1388142	-	NA	NA	NA	NA	FOXF2	NA	chr6:1390069-1395832	inter
CUST_46640_PI429285431	2.6295998	A	3.4659574	P	0.560055769185695	0	lncRNA	50814-2_{3001..6000}	"gi|219521904|ref|NR_026556.1| Homo sapiens ankyrin repeat domain 26 pseudogene 1 (ANKRD26P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219521904|ref|NR_026556.1| Homo sapiens ankyrin repeat domain 26 pseudogene 1 (ANKRD26P1), non-coding RNA"	Chr16	 46506249	 46509248	-	124149	NR_026556.1	NA	NA	NA	NA	NA	inter
CUST_18754_PI429285431	1.0184963	A	0.93950754	A	1.05627739588974	0	lncRNA	20450-1_{1..676}	lnc-NKAIN3-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKAIN3-3:4	chr8	 64087890	 64088565	+	lnc-NKAIN3-3	lnc-NKAIN3-3:4	ENSG00000185728	YTHDF3	YTHDF3	NA	chr8:64081121-64098259	inner
CUST_50239_PI429285431	7.7627335	P	7.540229	P	1.16675730503192	0	lncRNA	53963-1_{1..736}	hg19_lincRNAsTranscripts_TCONS_l2_00029337 range=chr9:67330847-67340201 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029337 range=chr9:67330847-67340201 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 67330847	 67331582	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4845_PI429285431	0.898672	A	0.90351105	A	0.996651445092991	0	lncRNA	4788-1_{1..786}	"transcript_id ""ENST00000553762.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553762.1"" | genecode_v17"	chr14	 59294952	 59295737	+	ENSG00000258583.1	ENST00000553762.1	RP11-112J1.2	RP11-112J1.2-001	NA	"hg19_refFlat_TMEM98:range=chr17:31258547-312680115'pad=0,hg19_refFlat_TMEM98:range=chr17:31258547-312680115'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00"	NA	inter
CUST_49266_PI429285431	0.8990099	A	0.90928215	A	0.992905107309116	0	lncRNA	53085-1_{1..1568}	hg19_lincRNAsTranscripts_TCONS_l2_00022505 range=chr5:124372381-124486527 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022505 range=chr5:124372381-124486527 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	124372381	124373948	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010484	0.8996796	A	0.8994346	A	1.00016983547965	0	lncRNA	TCONS_00029931	NA	NA	NA	NA	XLOC_014411	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014411), lincRNA [TCONS_00029931]"	chr22:50056182-50056123	hs|22q13.33	Agilent_HUMAN_G3V2	TCONS_00029931	TCONS_00029931	chr22	 50056123	 50056182	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6517_PI429285431	3.9730349	P	3.4819188	P	1.40553180496699	0	lncRNA	6459-1_{1..2481}	"transcript_id ""ENST00000601124.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601124.1"" | genecode_v17"	chr19	 39916575	 39919055	+	ENSG00000269410.1	ENST00000601124.1	CTB-60E11.4	CTB-60E11.4-001	PLEKHG2	"hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90chr19:39906575-39919055"	NA	inner
CUST_10965_PI429285431	4.5397677	P	4.5541153	P	0.990104289484736	0	lncRNA	12507-1_{1..476}	lnc-TMEM132B-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132B-4:7	chr12	126651723	126652198	+	lnc-TMEM132B-4	lnc-TMEM132B-4:7	XLOC_009937	linc-TMEM132C-12	NA	NA	NA	inter
CUST_6729_PI429285431	1.6558363	A	2.0533807	A	0.759149326365924	0	lncRNA	6677-1_{1..1340}	"transcript_id ""ENST00000416190.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416190.1"" | genecode_v17"	chr20	 54039581	 54040920	+	ENSG00000235166.2	ENST00000416190.1	RP5-1010E17.1	RP5-1010E17.1-002	NA	NA	NA	inter
CUST_27391_PI429285431	3.4347897	P	3.6530168	P	0.859621159423596	0	lncRNA	28953-1_{1..389}	n324553|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000193728|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000193728|-1.0777300|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324553|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000193728|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000193728|-1.0777300|-1.0000000	chr6	 29199965	 29200353	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12933_PI429285431	5.124475	P	5.8111773	P	0.621272327158459	0	lncRNA	14561-1_{1..452}	lnc-PPIA-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPIA-1:2	chr7	 44889058	 44889509	+	lnc-PPIA-1	lnc-PPIA-1:2	XLOC_006069	linc-CCM2-2	H2AFV	NA	chr7:44879058-44887725	inter
LNCA_21_P0006204	0.89415586	A	0.89112073	A	1.0021060063248	0	lncRNA	TCONS_00016667	NA	NA	NA	NA	XLOC_007508	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007508), lincRNA [TCONS_00016667]"	chr9:110331413-110331472	hs|9q31.2	Agilent_HUMAN_G3V2	TCONS_00016667	TCONS_00016667	chr9	110331413	110331472	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2170_PI429285431	1.0838423	A	1.8288851	A	0.596650170612083	0	lncRNA	2161-1_{1..434}	"transcript_id ""ENST00000512882.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512882.2"" | genecode_v17"	chr5	 61030965	 61031398	-	ENSG00000251575.2	ENST00000512882.2	CTD-2170G1.2	CTD-2170G1.2-002	NA	NA	NA	inter
CUST_15652_PI429285431	0.91029453	A	0.89639187	A	1.00968317101916	0	lncRNA	17345-1_{1..241}	lnc-SESN3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SESN3-1:2	chr11	 94819988	 94820228	-	lnc-SESN3-1	lnc-SESN3-1:2	XLOC_009526	linc-CWC15	ENDOD1	NA	chr11:94822974-94830018	inter
CUST_31759_PI429285431	0.912742	A	0.9176105	A	0.996631100470843	0	lncRNA	33499-1_{1..1130}	n338298|AL157460|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|692|NULL|-1.0891000|-0.3877279	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n338298|AL157460|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|692|NULL|-1.0891000|-0.3877279	chr19	  9455459	  9456588	+	NA	NA	NA	NA	ZNF559-ZNF177	NA	chr19:9445459-9466574	inner
CUST_44741_PI429285431	7.163637	P	6.0409474	P	2.17752547938022	0	lncRNA	49292-2_{3001..4408}	"gi|300795034|ref|NR_034069.1| Homo sapiens SRSF protein kinase 1 (SRPK1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300795034|ref|NR_034069.1| Homo sapiens SRSF protein kinase 1 (SRPK1), transcript variant 2, non-coding RNA"	Chr6	 35803811	 35805218	-	6732	NR_034069.1	NA	NA	NA	NA	NA	inter
CUST_559_PI429285431	2.7793634	A	1.6995523	A	2.11375929686721	0	lncRNA	551-1_{1..174}	"transcript_id ""ENST00000458662.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458662.1"" | genecode_v17"	chr1	211889270	211889443	-	ENSG00000226868.1	ENST00000458662.1	RP11-122M14.3	RP11-122M14.3-001	NA	NA	NA	inter
CUST_50009_PI429285431	2.321536	A	3.0847962	P	0.589163434634399	0	lncRNA	53746-1_{1..1652}	hg19_lincRNAsTranscripts_TCONS_l2_00028485 range=chr8:39172182-39274745 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028485 range=chr8:39172182-39274745 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 39172182	 39173833	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39135_PI429285431	0.90688545	A	0.89434654	A	1.00872918920967	0	lncRNA	40111-1_{1..2014}	n385741|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ctx.2||0.2671300|-0.4342178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385741|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ctx.2||0.2671300|-0.4342178	chrX	 10466858	 10468871	-	NA	NA	NA	NA	MID1	NA	chrX:10456858-10478872	inner
CUST_26374_PI429285431	3.2300298	P	3.2486238	P	0.987194320808425	0	lncRNA	27881-1_{1..549}	lnc-MUC22-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MUC22-1:4	chr6	 31027185	 31027733	+	lnc-MUC22-1	lnc-MUC22-1:4	ENSG00000228789.2	HCG22	NA	NA	NA	inter
CUST_1056_PI429285431	2.321794	A	2.6985903	A	0.77014590660298	0	lncRNA	1046-1_{1..766}	"transcript_id ""ENST00000435895.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435895.1"" | genecode_v17"	chr2	122548041	122548806	+	ENSG00000224655.1	ENST00000435895.1	AC018737.3	AC018737.3-002	NA	NA	NA	inter
CUST_3401_PI429285431	2.1996872	A	2.5392604	A	0.79027506848106	0	lncRNA	3374-1_{1..675}	"transcript_id ""ENST00000585417.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585417.1"" | genecode_v17"	chr9	 42468743	 42469417	+	ENSG00000223839.3	ENST00000585417.1	FAM95B1	FAM95B1-007	CBWD7	NA	chr9:42478004-42480577	inter
LNCA_21_P0005105	0.8957693	A	0.9233241	A	0.981081708426247	0	lncRNA	TCONS_00012422	NA	NA	NA	NA	XLOC_005160	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005160), lincRNA [TCONS_00012422]"	chr6:8906346-8906405	hs|6p24.3	Agilent_HUMAN_G3V2	TCONS_00012422	TCONS_00012422	chr6	  8906346	  8906405	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29797_PI429285431	2.5674212	A	2.5390463	A	1.01986267097581	0	lncRNA	31560-1_{1..326}	n333506|BC034722|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000093538|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000093538|-1.2996600|-0.2983037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333506|BC034722|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000093538|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000093538|-1.2996600|-0.2983037	chr7	135611460	135611785	-	NA	NA	NA	NA	LUZP6	NA	chr7:135611503-135621786	inner
CUST_33589_PI429285431	4.6187825	P	4.9465275	P	0.796780916883763	0	lncRNA	35154-1_{1..399}	n340343|AF056421|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2804|NULL|-1.2602800|-0.2708154	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340343|AF056421|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2804|NULL|-1.2602800|-0.2708154	chr5	  9089015	  9089413	-	NA	NA	NA	NA	SEMA5A	NA	chr5:9079015-9099457	inner
LNCA_21_P0002024	7.518092	P	7.3927097	P	1.09079674478258	0	lncRNA	ENST00000439745	NA	NA	NA	NA	XLOC_002000	NA	ENST00000439745	NA	NA	"BROAD Institute lincRNA (XLOC_002000), lincRNA [TCONS_00003215]"	chr2:16408411-16408352	hs|2p24.3	Agilent_HUMAN_G3V2	ENST00000439745	ENST00000439745	chr2	 16408352	 16408411	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43142_PI429285431	0.89688987	A	0.8964606	A	1.00029759156178	0	lncRNA	47956-1_{1..503}	ENST00000602613 proj_havana:sense_intronic chromosome:GRCh37:HG185_PATCH:40194484:40194986:-1 gene:ENSG00000270046 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602613 proj_havana:sense_intronic chromosome:GRCh37:HG185_PATCH:40194484:40194986:-1 gene:ENSG00000270046 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chrHG185_PATCH	 40194484	 40194986	-	ENSG00000270046	ENST00000602613	NA	NA	NA	NA	NA	Unknown
CUST_34699_PI429285431	0.9121778	A	0.9078617	A	1.00299617212422	0	lncRNA	36149-1_{1..3000}	n341605|BX648371|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4076|NULL|0.1551040|-0.3775873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341605|BX648371|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4076|NULL|0.1551040|-0.3775873	chr8	126953372	126956371	-	NA	NA	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30"	NA	inter
CUST_25188_PI429285431	4.29893	P	3.7742445	P	1.43861993417751	0	lncRNA	26719-1_{1..1216}	lnc-ZNF705A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF705A-1:2	chr12	  8356654	  8357869	+	lnc-ZNF705A-1	lnc-ZNF705A-1:2	ENSG00000226711.2	FAM66C	NA	NA	NA	inter
CUST_1934_PI429285431	3.7779837	P	4.093314	P	0.803666972927177	0	lncRNA	1926-1_{1..1028}	"transcript_id ""ENST00000509370.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509370.1"" | genecode_v17"	chr4	148488758	148489785	+	ENSG00000251688.1	ENST00000509370.1	RP11-752L20.5	RP11-752L20.5-001	NA	NA	NA	inter
CUST_42640_PI429285431	6.7835374	P	7.2316875	P	0.732982114148022	0	lncRNA	45519-1_{1..132}	ENST00000516231 ncrna:snoRNA chromosome:GRCh37:16:68664126:68664257:-1 gene:ENSG00000252040 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516231 ncrna:snoRNA chromosome:GRCh37:16:68664126:68664257:-1 gene:ENSG00000252040 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 68664126	 68664257	-	ENSG00000252040	ENST00000516231	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	inter
CUST_21553_PI429285431	0.8873459	A	1.307509	A	0.747340131016936	0	lncRNA	23169-1_{1..831}	lnc-MSX2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MSX2-4:2	chr5	173955370	173956200	+	lnc-MSX2-4	lnc-MSX2-4:2	ENSG00000249306.1	RP11-267A15.1	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40"	NA	inter
CUST_47354_PI429285431	0.8897907	A	0.92931086	A	0.972978506002709	0	lncRNA	51405-1_{1..453}	"gi|336455044|ref|NR_038870.1| Homo sapiens C21orf91 overlapping transcript 1 (non-protein coding) (C21orf91-OT1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336455044|ref|NR_038870.1| Homo sapiens C21orf91 overlapping transcript 1 (non-protein coding) (C21orf91-OT1), transcript variant 2, non-coding RNA"	Chr21	 19149721	 19150173	-	246312	NR_038870.1	NA	NA	NA	NA	NA	inter
CUST_8782_PI429285431	2.4039438	A	3.0899959	A	0.621552387945105	0	lncRNA	10322-2_{3001..4433}	lnc-NKPD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NKPD1-1:1	chr19	 45642307	 45643739	-	lnc-NKPD1-1	lnc-NKPD1-1:1	ENSG00000250044	AC011489.1	LRRC68	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50chr19:45629307-45650543"	NA	inner
CUST_28781_PI429285431	0.89702016	A	0.89804673	A	0.999288689000551	0	lncRNA	30488-1_{1..2241}	n326187|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092348|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092348|-0.2304730|-0.2725808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326187|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092348|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092348|-0.2304730|-0.2725808	chr1	230377300	230379540	-	NA	NA	NA	NA	GALNT2	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_GALNT2:range=chr1:230203028-2304152045'pad=0,hg19_refFlat_GALNT2:range=chr1:230203028-2304152045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40chr1:230367300-230392482"	NA	inner
CUST_11230_PI429285431	5.7584443	P	6.265351	P	0.703729696835343	0	lncRNA	12788-1_{1..365}	lnc-RASSF4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASSF4-1:2	chr10	 45450917	 45451281	+	lnc-RASSF4-1	lnc-RASSF4-1:2	XLOC_008475	linc-RASSF4	RASSF4	NA	chr10:45455219-45461176	inter
CUST_13996_PI429285431	0.8923105	A	0.89615357	A	0.997339731666753	0	lncRNA	15642-1_{1..732}	lnc-DTWD2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DTWD2-3:2	chr5	117897616	117898347	-	lnc-DTWD2-3	lnc-DTWD2-3:2	XLOC_004965	linc-SEMA6A-2	NA	NA	NA	inter
CUST_2186_PI429285431	1.1227189	A	1.6958749	A	0.672144813482657	0	lncRNA	2178-1_{1..438}	"transcript_id ""ENST00000479830.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000479830.2"" | genecode_v17"	chr5	 68334345	 68334782	-	ENSG00000250237.1	ENST00000479830.2	CTC-498J12.1	CTC-498J12.1-001	NA	NA	NA	inter
CUST_50522_PI429285431	1.0581878	A	0.9185006	A	1.10166623063234	0	lncRNA	54218-1_{1..369}	hg19_lincRNAsTranscripts_TCONS_l2_00030617 range=chrX:135897100-135904363 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030617 range=chrX:135897100-135904363 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	135897100	135897468	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2192_PI429285431	1.2835239	A	1.0595099	A	1.1679787286944	0	lncRNA	2184-1_{1..958}	"transcript_id ""ENST00000513767.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513767.3"" | genecode_v17"	chr5	 71982939	 71983896	-	ENSG00000251613.3	ENST00000513767.3	CTC-347C20.1	CTC-347C20.1-002	TNPO1	NA	chr5:72021244-72067492	inter
CUST_3798_PI429285431	6.522437	P	7.1022024	P	0.669072567995727	0	lncRNA	3766-1_{1..742}	"transcript_id ""ENST00000601212.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601212.1"" | genecode_v17"	chr10	109722662	109723403	-	ENSG00000229981.2	ENST00000601212.1	RP11-215N21.1	RP11-215N21.1-005	NA	NA	NA	inter
CUST_216_PI429201921	0.9238459	A	1.0148709	A	0.938855478048801	0	lncRNA	170-1_{1..3000}	TC10002745.hg.1	TCONS_l2_00003662-XLOC_l2_002043 // Broad TUCP // linc-LRIT1-1 chr10:-:86953175-86955677 // chr10 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00004225-XLOC_l2_002043 // Broad TUCP // linc-LRIT1-1 chr10:-:86953176-86958694 // chr10 // 100 // 100 // 0 // --- // 0/// TCONS_l2_00004224-XLOC_l2_002043 // Broad TUCP // linc-LRIT1-1 chr10:-:86953176-86957714 // chr10 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr10:-:86953175-86955677	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00003662-XLOC_l2_002043	linc-LRIT1-1	chr10	 86953175	 86955677	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15918_PI429285431	4.715788	P	5.262899	P	0.684389248065166	0	lncRNA	17613-1_{1..2448}	lnc-RP11-82I10.1.1-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RP11-82I10.1.1-6:2	chr15	 98646464	 98648911	-	lnc-RP11-82I10.1.1-6	lnc-RP11-82I10.1.1-6:2	XLOC_011604	linc-RGMA-3	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40"	NA	inter
CUST_3379_PI429285431	4.782169	P	5.06628	P	0.821247512082123	0	lncRNA	3353-1_{1..736}	"transcript_id ""ENST00000602851.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602851.1"" | genecode_v17"	chr9	 24545950	 24546685	+	ENSG00000269957.1	ENST00000602851.1	RP11-20A20.2	RP11-20A20.2-002	NA	NA	NA	inter
CUST_39924_PI429285431	0.89793825	A	0.8984601	A	0.999638346556203	0	lncRNA	40802-1_{1..1165}	n406787|NR_024239|lncRNA|Homosapiens||RefGeneNoncode|NR_024239||4.9205100|-0.1419177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406787|NR_024239|lncRNA|Homosapiens||RefGeneNoncode|NR_024239||4.9205100|-0.1419177	chr11	104864966	104866130	-	NA	NA	NA	NA	CASP5	NA	chr11:104864967-104893895	inter
CUST_39244_PI429285431	4.8148837	P	5.1825523	P	0.775033942766011	0	lncRNA	40215-1_{1..1559}	n386099|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010azb.1||11.2147000|-0.2610737	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386099|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010azb.1||11.2147000|-0.2610737	chr15	 28878268	 28879826	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19919_PI429285431	2.7336845	A	3.1080532	P	0.771442909788541	0	lncRNA	21574-1_{1..543}	lnc-TMEM179-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM179-1:1	chr14	105055962	105056504	-	lnc-TMEM179-1	lnc-TMEM179-1:1	ENSG00000259037.1	RP11-614O9.1	C14orf180	NA	chr14:105046056-105056183	inner
CUST_13546_PI429285431	4.6720004	P	4.3410454	P	1.25784573697394	0	lncRNA	15186-1_{1..2039}	lnc-ZFP42-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP42-7:2	chr4	188134283	188136321	+	lnc-ZFP42-7	lnc-ZFP42-7:2	XLOC_003825	linc-ZFP42-7	NA	NA	NA	inter
LNCA_21_P0004464	0.90723246	A	1.3969716	A	0.712153853810643	0	lncRNA	TCONS_00010547	NA	NA	NA	NA	XLOC_005075	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005075), lincRNA [TCONS_00010547]"	chr5:167704323-167701013	hs|5q34	Agilent_HUMAN_G3V2	TCONS_00010547	TCONS_00010547	chr5	167701013	167704323	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010242	0.90652263	A	0.8995973	A	1.0048118127315	0	lncRNA	TCONS_00029013	NA	NA	NA	NA	XLOC_013936	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013936), lincRNA [TCONS_00029013]"	chr21:38667390-38668413	hs|21q22.13	Agilent_HUMAN_G3V2	TCONS_00029013	TCONS_00029013	chr21	 38667390	 38668413	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010610	1.8171756	A	1.4746702	A	1.26795663047739	0	lncRNA	TCONS_l2_00001212	NA	NA	NA	NA	XLOC_l2_000894	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000894), lincRNA [TCONS_l2_00001212]"	chr1:47348182-47348123	hs|1p33	Agilent_HUMAN_G3V2	TCONS_l2_00001212	TCONS_l2_00001212	chr1	 47348123	 47348182	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32455_PI429285431	1.4358349	A	0.8981689	A	1.4516221742683	0	lncRNA	34126-1_{1..2218}	n339055|AK026734|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1484|NULL|-1.3516400|-0.4945007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339055|AK026734|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1484|NULL|-1.3516400|-0.4945007	chr2	187219296	187221513	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012707	4.1836634	P	3.718297	P	1.38066795590902	0	lncRNA	BC087857	NA	BC087857	NA	Hs.98902	LOC728339	uncharacterized LOC728339	NA	THC2679516	NA	"BROAD Institute lincRNA (XLOC_l2_011424), lincRNA [TCONS_l2_00021494]"	chr4:190785893-190785834	hs|4q35.2	Agilent_HUMAN_G3V2	BC087857	BC087857	chr4	190785834	190785893	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009785	2.0177054	A	2.3269897	A	0.807042021725846	0	lncRNA	TCONS_00027516	NA	NA	NA	NA	XLOC_013038	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013038), lincRNA [TCONS_00027516]"	chr19:32530671-32530730	hs|19q13.11	Agilent_HUMAN_G3V2	TCONS_00027516	TCONS_00027516	chr19	 32530671	 32530730	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15052_PI429285431	4.5269494	P	5.107828	P	0.668556503073539	0	lncRNA	16715-1_{1..236}	lnc-RP11-171N4.2.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-171N4.2.1-1:3	chr4	157563417	157563652	-	lnc-RP11-171N4.2.1-1	lnc-RP11-171N4.2.1-1:3	XLOC_004135	linc-CTSO-2	NA	NA	NA	inter
CUST_25375_PI429285431	7.1441116	P	7.3441963	P	0.870499455150486	0	lncRNA	26906-1_{1..186}	lnc-ATL3-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATL3-1:6	chr11	 63533279	 63533464	-	lnc-ATL3-1	lnc-ATL3-1:6	ENSG00000188070.7	C11orf95	RTN3	NA	chr11:63523279-63527363	inner
CUST_60_PI429201921	0.9123206	A	0.9189937	A	0.995385240424823	0	lncRNA	62-1_{1..1808}	TC21000576.hg.1	TCONS_00028791-XLOC_013860 // Rinn lincRNAs // linc-RBM11-2 chr21:+:15142252-15144061 // chr21 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr21:+:15142252-15144061	NA	Affy_HUMAN_HTA2.0	TCONS_00028791-XLOC_013860	linc-RBM11-2	chr21	 15142252	 15144061	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26810_PI429285431	5.9127398	P	6.5795894	P	0.629880651190689	0	lncRNA	28322-1_{1..626}	n323878|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056353|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056353|-1.1647000|-0.4390814	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323878|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056353|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056353|-1.1647000|-0.4390814	chrX	 46070302	 46070927	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40"	NA	inter
CUST_21563_PI429285431	1.1949356	A	1.0480802	A	1.10715360993264	0	lncRNA	23179-1_{1..459}	lnc-HADH-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HADH-1:4	chr4	109120978	109121436	+	lnc-HADH-1	lnc-HADH-1:4	ENSG00000232021.2	LEF1-AS1	NA	NA	NA	inter
CUST_26565_PI429285431	5.1296597	P	4.683195	P	1.36269689611484	0	lncRNA	28069-1_{1..449}	lnc-LAMB3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LAMB3-1:1	chr1	209897375	209897823	-	lnc-LAMB3-1	lnc-LAMB3-1:1	ENSG00000227591.1	RP1-28O10.1	HSD11B1	NA	chr1:209887375-209907470	inner
CUST_46148_PI429285431	5.2963595	P	5.717938	P	0.746607289719997	0	lncRNA	50397-1_{1..2156}	"gi|386869377|ref|NR_048555.1| Homo sapiens proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 (PSMD9), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386869377|ref|NR_048555.1| Homo sapiens proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 (PSMD9), transcript variant 3, non-coding RNA"	Chr12	122326637	122328792	+	5715	NR_048555.1	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_42683_PI429285431	1.3889273	A	1.1248751	A	1.20084687608047	0	lncRNA	45603-1_{1..77}	ENST00000362520 ncrna:snoRNA chromosome:GRCh37:14:101429391:101429467:1 gene:ENSG00000199390 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362520 ncrna:snoRNA chromosome:GRCh37:14:101429391:101429467:1 gene:ENSG00000199390 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101429391	101429467	+	ENSG00000199390	ENST00000362520	NA	NA	NA	NA	NA	inter
CUST_24992_PI429285431	5.5365047	P	5.388274	P	1.10820954643754	0	lncRNA	26532-1_{1..1966}	lnc-OST4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OST4-2:1	chr2	 27237369	 27239334	-	lnc-OST4-2	lnc-OST4-2:1	ENSG00000205500.4	AC013472.3	MAPRE3	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr2:27227369-27247480"	NA	inner
CUST_39617_PI429285431	3.5995295	P	3.5031586	P	1.06908080403892	0	lncRNA	40556-2_{3001..3611}	n387699|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011lrd.1||1.1037000|-0.3888164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n387699|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011lrd.1||1.1037000|-0.3888164	chr9	 46690565	 46691175	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28039_PI429285431	1.1516231	A	2.3333242	A	0.440831401688866	0	lncRNA	29655-1_{1..712}	n325302|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324928|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324928|-0.8589470|-0.3463869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325302|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324928|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324928|-0.8589470|-0.3463869	chr2	 56158055	 56158766	-	NA	NA	NA	NA	EFEMP1	NA	chr2:56148055-56151298	inter
CUST_34365_PI429285431	0.8927212	A	0.9005917	A	0.994559438867782	0	lncRNA	35852-1_{1..3000}	n341233|BC037931|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3701|NULL|-1.1997600|-0.2792811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341233|BC037931|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3701|NULL|-1.1997600|-0.2792811	chr7	 41733516	 41736515	+	NA	NA	NA	NA	INHBA	NA	chr7:41728601-41742706	inter
CUST_50980_PI429285431	1.4249414	A	1.8870238	A	0.725937676599589	0	lncRNA	54623-1_{1..690}	hg19_lincRNAsTranscripts_TCONS_l2_00005881 range=chr12:108308449-108309264 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005881 range=chr12:108308449-108309264 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	108308449	108309138	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15586_PI429285431	0.898317	A	0.90130687	A	0.997929726018793	0	lncRNA	17272-1_{1..1344}	lnc-KLF7-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-KLF7-1:5	chr2	208118913	208120256	-	lnc-KLF7-1	lnc-KLF7-1:5	XLOC_002473	linc-KLF7-2	NA	NA	NA	inter
CUST_22326_PI429285431	0.925221	A	1.7911584	A	0.548689776478598	0	lncRNA	23925-1_{1..2450}	lnc-WDR45L-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR45L-3:1	chr17	 80634211	 80636660	-	lnc-WDR45L-3	lnc-WDR45L-3:1	ENSG00000262415.1	RP11-388C12.2	RAB40B	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50chr17:80624211-80644364"	NA	inner
CUST_28514_PI429285431	1.3934598	A	1.5738093	A	0.882489183029304	0	lncRNA	30183-1_{1..430}	n325859|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050895|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050895|-0.7721090|-0.3441348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325859|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050895|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050895|-0.7721090|-0.3441348	chr10	126607441	126607870	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007373	0.91396093	A	0.9218401	A	0.994553461995206	0	lncRNA	BC039351	NA	BC039351	NA	Hs.591972	LOC283214	uncharacterized LOC283214	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009505), lincRNA [TCONS_00019708]"	chr11:75469575-75469516	hs|11q13.5	Agilent_HUMAN_G3V2	BC039351	BC039351	chr11	 75469516	 75469575	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23727_PI429285431	0.904347	A	0.9139677	A	0.993353624430888	0	lncRNA	25291-1_{1..895}	lnc-MAPK6-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAPK6-6:1	chr15	 52430624	 52431518	+	lnc-MAPK6-6	lnc-MAPK6-6:1	ENSG00000259709.1	CTD-2184D3.7	GNB5	"hg19_refFlat_GNB5:range=chr15:52414954-524768735'pad=0,hg19_refFlat_GNB5:range=chr15:52414954-524768735'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_GNB5:range=chr15:52414954-524720765'pad=0,hg19_refFlat_GNB5:range=chr15:52414954-524720765'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70chr15:52420624-52441232"	NA	inner
CUST_24615_PI429285431	1.1827018	A	2.7420495	A	0.339304460271787	0	lncRNA	26164-1_{1..523}	lnc-MAP2K6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP2K6-3:1	chr17	 67014245	 67014767	+	lnc-MAP2K6-3	lnc-MAP2K6-3:1	ENSG00000231749.1	ABCA9-AS1	ABCA9	"hg19_refFlat_ABCA9:range=chr17:66972056-670472675'pad=0,hg19_refFlat_ABCA9:range=chr17:66972056-670472675'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30chr17:67004245-67024464"	NA	inner
CUST_42593_PI429285431	4.744183	P	4.593412	P	1.11016260275051	0	lncRNA	45441-1_{1..80}	ENST00000516978 ncrna:snoRNA chromosome:GRCh37:3:52722898:52722977:1 gene:ENSG00000252787 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516978 ncrna:snoRNA chromosome:GRCh37:3:52722898:52722977:1 gene:ENSG00000252787 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	 52722898	 52722977	+	ENSG00000252787	ENST00000516978	NA	NA	PBRM1	NA	chr3:52712898-52719866	inner
CUST_40361_PI429285431	1.702562	A	3.0207803	A	0.401029897135342	0	lncRNA	41161-1_{1..3000}	n409104|NR_033233|lncRNA|Homosapiens||RefGeneNoncode|NR_033233||6.6464200|-0.1773382	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409104|NR_033233|lncRNA|Homosapiens||RefGeneNoncode|NR_033233||6.6464200|-0.1773382	chr6	 39872033	 39875032	-	NA	NA	NA	NA	DAAM2	NA	chr6:39862033-39872653	inner
CUST_11738_PI429285431	0.91466457	A	1.6787598	A	0.588822526278301	0	lncRNA	13318-1_{1..664}	lnc-CEP19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEP19-1:1	chr3	196365903	196366566	-	lnc-CEP19-1	lnc-CEP19-1:1	XLOC_003400	linc-WDR53-2	LRRC33	NA	chr3:196366656-196376498	inter
CUST_41382_PI429285431	4.9728737	P	5.1982594	P	0.855366315606425	0	lncRNA	42480-1_{1..78}	ENST00000582742 ncrna:miRNA chromosome:GRCh37:9:137741021:137741098:-1 gene:ENSG00000265286 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582742 ncrna:miRNA chromosome:GRCh37:9:137741021:137741098:-1 gene:ENSG00000265286 gene_biotype:miRNA transcript_biotype:miRNA	chr9	137741021	137741098	-	ENSG00000265286	ENST00000582742	NA	NA	COL5A1	NA	chr9:137731021-137736689	inter
CUST_4883_PI429285431	2.154711	A	3.260457	P	0.464662138054065	0	lncRNA	4826-1_{1..3000}	"transcript_id ""ENST00000602396.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602396.1"" | genecode_v17"	chr14	 71685817	 71688816	+	ENSG00000269945.1	ENST00000602396.1	RP6-91H8.5	RP6-91H8.5-001	NA	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50"	NA	inter
CUST_48558_PI429285431	1.394669	A	2.474462	A	0.473096699101351	0	lncRNA	52406-1_{1..468}	hg19_lincRNAsTranscripts_TCONS_l2_00015025 range=chr2:186903058-186948103 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015025 range=chr2:186903058-186948103 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	186903058	186903525	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19741_PI429285431	0.89288306	A	1.2488288	A	0.781357266596215	0	lncRNA	21399-1_{1..452}	lnc-DYNLRB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DYNLRB2-1:1	chr16	 80775995	 80776446	+	lnc-DYNLRB2-1	lnc-DYNLRB2-1:1	ENSG00000260594.1	CTD-2055G21.1	CDYL2	NA	chr16:80765995-80786202	inner
CUST_50408_PI429285431	0.9089925	A	0.90629494	A	1.00187155528587	0	lncRNA	54112-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030656 range=chrX:2533993-2556735 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030656 range=chrX:2533993-2556735 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	  2533993	  2536992	+	NA	NA	NA	NA	NA	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40"	NA	inter
CUST_32699_PI429285431	4.684639	P	5.4771156	P	0.577352130214432	0	lncRNA	34345-1_{1..3000}	n339330|D87071|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1762|NULL|32.7604000|-0.0784163	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339330|D87071|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1762|NULL|32.7604000|-0.0784163	chr16	 88781754	 88784753	-	NA	NA	NA	NA	RNF166	NA	chr16:88771754-88772829	inner
CUST_40157_PI429285431	3.6153884	P	3.9610617	P	0.786940628814922	0	lncRNA	40995-1_{1..3000}	n407844|NR_027399|lncRNA|Homosapiens||RefGeneNoncode|NR_027399||1.0772800|-0.2286003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n407844|NR_027399|lncRNA|Homosapiens||RefGeneNoncode|NR_027399||1.0772800|-0.2286003	chr16	 67714618	 67717617	-	NA	NA	NA	NA	RANBP10	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.31;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chr16:67757005-67763273"	NA	inner
CUST_24147_PI429285431	0.8912581	A	0.8932062	A	0.998650591249417	0	lncRNA	25699-1_{1..391}	lnc-BTF3L4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BTF3L4-1:1	chr1	 52518079	 52518469	+	lnc-BTF3L4-1	lnc-BTF3L4-1:1	ENSG00000228369.2	RP11-91A18.5	TXNDC12	NA	chr1:52508079-52521047	inter
CUST_40692_PI429285431	0.89165753	A	0.9065988	A	0.989696944706801	0	lncRNA	41427-1_{1..1498}	n410250|NR_037173_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037173_3||0.3535040|-0.2905202	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410250|NR_037173_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037173_3||0.3535040|-0.2905202	chr6	  4093240	  4094737	+	NA	NA	NA	NA	C6orf201	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-20.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40chr6:4083240-4105655"	NA	inner
CUST_46297_PI429285431	0.8947709	A	0.905005	A	0.992931363606952	0	lncRNA	50529-1_{1..3000}	"gi|222831584|ref|NR_026731.1| Homo sapiens chromosome 14 open reading frame 23 (C14orf23), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|222831584|ref|NR_026731.1| Homo sapiens chromosome 14 open reading frame 23 (C14orf23), transcript variant 1, non-coding RNA"	Chr14	 29241910	 29244909	+	387978	NR_026731.1	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.73;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50"	NA	inter
CUST_39442_PI429285431	6.3381634	P	4.761032	P	2.98375980047612	0	lncRNA	40388-3_{6001..8226}	n386770|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tzj.1||8.7166400|-0.3646514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386770|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tzj.1||8.7166400|-0.3646514	chr15	 21938513	 21940738	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10"	NA	inter
CUST_25809_PI429285431	6.8952146	P	7.1933312	P	0.813313462699906	0	lncRNA	27330-1_{1..466}	lnc-BEGAIN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BEGAIN-1:1	chr14	101055592	101056057	-	lnc-BEGAIN-1	lnc-BEGAIN-1:1	ENSG00000258576.1	CTD-2644I21.1	NA	NA	NA	inter
CUST_31859_PI429285431	1.2348511	A	0.8869867	A	1.27267530993753	0	lncRNA	33592-1_{1..1496}	n338409|AF297014|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|806|NULL|-0.8295000|-0.2688006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338409|AF297014|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|806|NULL|-0.8295000|-0.2688006	chr1	182610947	182612442	-	NA	NA	NA	NA	RGS8	NA	chr1:182615792-182622442	inter
CUST_9635_PI429285431	2.5509944	A	0.9201544	A	3.09693263154716	0	lncRNA	11152-1_{1..231}	lnc-TMEM132B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132B-3:2	chr12	126583396	126583626	+	lnc-TMEM132B-3	lnc-TMEM132B-3:2	XLOC_009935	linc-TMEM132C-14	NA	NA	NA	inter
CUST_25675_PI429285431	8.829394	P	8.928387	P	0.933684475169653	0	lncRNA	27204-1_{1..500}	lnc-DKK3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DKK3-1:1	chr11	 12284268	 12284767	-	lnc-DKK3-1	lnc-DKK3-1:1	ENSG00000254680.1	RP11-265D17.2	MICAL2	NA	chr11:12274268-12285332	inner
CUST_17858_PI429285431	1.00159	A	0.9113193	A	1.06456991422832	0	lncRNA	19594-1_{1..626}	lnc-AC092327.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AC092327.1-4:1	chr16	 86192218	 86192843	-	lnc-AC092327.1-4	lnc-AC092327.1-4:1	XLOC_012042	linc-COX4NB-5	NA	NA	NA	inter
CUST_30714_PI429285431	7.7814784	P	7.3994417	P	1.30318029989569	0	lncRNA	32496-1_{1..409}	n336256|Y07642|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325352|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325352|0.6414520|-0.0230298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336256|Y07642|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325352|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325352|0.6414520|-0.0230298	chr17	 66508141	 66508549	+	NA	NA	NA	NA	PRKAR1A	NA	chr17:66508110-66528911	inner
CUST_642_PI429285431	3.3354845	P	2.7016134	A	1.55172306106525	0	lncRNA	634-1_{1..424}	"transcript_id ""ENST00000449119.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449119.1"" | genecode_v17"	chr2	   421057	   421480	+	ENSG00000226277.1	ENST00000449119.1	AC105393.2	AC105393.2-002	NA	NA	NA	inter
CUST_28435_PI429285431	0.8916344	A	1.1827354	A	0.817278110589628	0	lncRNA	30094-1_{1..525}	n325759|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044595|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044595|-1.2218400|-0.3485610	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325759|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044595|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044595|-1.2218400|-0.3485610	chr13	 37525834	 37526358	-	NA	NA	NA	NA	ALG5	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40chr13:37523907-37543585"	NA	inner
CUST_23642_PI429285431	1.8831123	A	0.90290827	A	1.97274438033172	0	lncRNA	25207-1_{1..840}	lnc-SAP30-5:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:9	chr4	174462626	174463465	+	lnc-SAP30-5	lnc-SAP30-5:9	ENSG00000237125.3	RP11-471J12.1	NA	NA	NA	inter
CUST_27356_PI429285431	0.8952868	A	1.1046076	A	0.864944338779443	0	lncRNA	28919-1_{1..514}	n324518|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040502|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040502|-1.1011100|-0.3407564	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324518|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040502|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040502|-1.1011100|-0.3407564	chr6	 41215642	 41216155	-	NA	NA	NA	NA	TREML4	NA	chr6:41205642-41206120	inter
LNCA_21_P0005155	0.89383006	A	1.421328	A	0.693756870975174	0	lncRNA	TCONS_00012660	NA	NA	NA	NA	XLOC_005621	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005621), lincRNA [TCONS_00012660]"	chr6:15730456-15730397	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00012660	TCONS_00012660	chr6	 15730397	 15730456	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23032_PI429285431	3.54228	P	4.0166354	P	0.719788321515243	0	lncRNA	24603-1_{1..280}	lnc-GTF2IRD2B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTF2IRD2B-1:1	chr7	 74863655	 74863934	+	lnc-GTF2IRD2B-1	lnc-GTF2IRD2B-1:1	ENSG00000254977.1	AC004878.8	GATSL2	NA	chr7:74853655-74867341	inner
CUST_24610_PI429285431	2.406538	A	2.4373417	A	0.978874831736512	0	lncRNA	26159-1_{1..517}	lnc-CTD-2517M22.14.1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2517M22.14.1-2:5	chr8	145742798	145743314	-	lnc-CTD-2517M22.14.1-2	lnc-CTD-2517M22.14.1-2:5	ENSG00000160957.7	RECQL4	C8orf82	NA	chr8:145751603-145752956	inner
CUST_38765_PI429285431	9.159115	P	9.21215	P	0.963906422941307	0	lncRNA	39758-1_{1..1559}	n384365|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fgn.1||-0.1579910|-0.3729709	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384365|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fgn.1||-0.1579910|-0.3729709	chr3	169858399	169859957	-	NA	NA	NA	NA	PHC3	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40chr3:169848399-169869958"	NA	inner
CUST_18074_PI429285431	0.88763946	A	0.88343424	A	1.00291908865276	0	lncRNA	19809-1_{1..566}	lnc-SOCS6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOCS6-2:1	chr18	 67874265	 67874830	+	lnc-SOCS6-2	lnc-SOCS6-2:1	XLOC_012708	linc-SOCS6	RTTN	NA	chr18:67864265-67872962	inter
CUST_3248_PI429285431	1.6292657	A	2.1887202	A	0.678558686261126	0	lncRNA	3227-1_{1..1948}	"transcript_id ""ENST00000514926.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000514926.1"" | genecode_v17"	chr8	102064282	102066229	+	ENSG00000248599.1	ENST00000514926.1	RP11-302J23.1	RP11-302J23.1-001	NA	NA	NA	inter
CUST_35398_PI429285431	0.8993453	A	0.9192288	A	0.986312347623728	0	lncRNA	36809-1_{1..2333}	n342458|CR618142|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4951|NULL|-1.1675300|-0.2471849	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342458|CR618142|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4951|NULL|-1.1675300|-0.2471849	chr2	189091077	189093409	-	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_C18orf25:range=chr18:43795847-438430815'pad=0,hg19_refFlat_C18orf25:range=chr18:43795847-438430815'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50"	NA	inter
CUST_389_PI429201921	7.6544914	P	8.236386	P	0.668085846236064	0	lncRNA	246-3_{6001..9000}	TC03003065.hg.1	 TCONS_l2_00019491-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125626357-125633319 // chr3 // 100 // 100 // 0 // --- // 0///TCONS_l2_00019490-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125623901-125627019 // chr3 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00019493-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125627284-125627714 // chr3 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00020180-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125626847-125629115 // chr3 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00019492-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125626797-125627926 // chr3 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr3:-:125623901-125627019	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00019490-XLOC_l2_010330	linc-OSBPL11-4	chr3	125623901	125627019	-	NA	NA	NA	NA	NFIA	NA	chr1:61704617-61729182	Unknown
CUST_45469_PI429285431	12.598638	P	12.909393	P	0.806219732957291	0	lncRNA	49884-1_{1..2762}	"gi|365906260|ref|NR_045720.1| Homo sapiens mannosidase, alpha, class 1B, member 1 (MAN1B1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|365906260|ref|NR_045720.1| Homo sapiens mannosidase, alpha, class 1B, member 1 (MAN1B1), transcript variant 2, non-coding RNA"	Chr9	139981379	139984140	+	11253	NR_045720.1	NA	NA	NA	NA	NA	inter
CUST_7490_PI429285431	0.8986666	A	0.88772684	A	1.00761168651856	0	lncRNA	9129-1_{1..1529}	lnc-EVPL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EVPL-1:1	chr17	 73971542	 73973070	-	lnc-EVPL-1	lnc-EVPL-1:1	ENSG00000251043	ENST00000505288	ACOX1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80chr17:73961542-73975515"	NA	inner
CUST_34282_PI429285431	2.0437076	A	1.406649	A	1.55515523843832	0	lncRNA	35780-2_{3001..4206}	n341141|BC040643|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3607|NULL|-1.0975300|-0.3162465	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341141|BC040643|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3607|NULL|-1.0975300|-0.3162465	chr11	121503202	121504407	+	NA	NA	NA	NA	SORL1	NA	chr11:121490202-121504471	inner
CUST_27673_PI429285431	1.3278568	A	1.9135207	A	0.666342630153555	0	lncRNA	29251-1_{1..829}	n324880|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170852|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170852|-1.1367100|-0.4323209	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324880|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170852|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170852|-1.1367100|-0.4323209	chr21	 21037927	 21038755	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1505_PI429285431	1.7621626	A	0.91183627	A	1.80290868752782	0	lncRNA	1492-1_{1..515}	"transcript_id ""ENST00000462835.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000462835.1"" | genecode_v17"	chr3	153149645	153150159	+	ENSG00000243012.1	ENST00000462835.1	RP11-292E2.4	RP11-292E2.4-001	NA	NA	NA	inter
CUST_33474_PI429285431	1.182018	A	1.515708	A	0.793504329613337	0	lncRNA	35047-1_{1..1719}	n340209|AL049990|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2670|NULL|-1.0378000|-0.3237726	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340209|AL049990|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2670|NULL|-1.0378000|-0.3237726	chr4	121952575	121954293	-	NA	NA	NA	NA	NDNF	NA	chr4:121956782-121964272	inter
CUST_36909_PI429285431	2.9810252	A	2.2498193	A	1.66002607154281	0	lncRNA	38069-1_{1..2975}	n345382|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_931|NULL|-1.5048500|-0.2972178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345382|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_931|NULL|-1.5048500|-0.2972178	chr20	  5187369	  5190343	+	NA	NA	NA	NA	CDS2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_UBFD1:range=chr16:23569064-235819115'pad=0,hg19_refFlat_UBFD1:range=chr16:23569064-235819115'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90chr20:5177369-5178533"	NA	inter
CUST_48667_PI429285431	0.9005488	A	1.4975879	A	0.661109384905734	0	lncRNA	52511-1_{1..472}	hg19_lincRNAsTranscripts_TCONS_l2_00014710 range=chr2:96494453-96517674 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014710 range=chr2:96494453-96517674 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 96494453	 96494924	-	NA	NA	NA	NA	LOC400986	NA	chr2:96516920-96527674	inter
CUST_32544_PI429285431	2.4001899	A	2.543151	A	0.905658402341307	0	lncRNA	34210-1_{1..2038}	n339159|BC043591|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1589|NULL|-0.7424820|-0.3407420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339159|BC043591|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1589|NULL|-0.7424820|-0.3407420	chr2	226626274	226628311	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46970_PI429285431	8.732059	P	7.534577	P	2.29339045821269	0	lncRNA	51073-2_{3001..3947}	"gi|391224434|ref|NR_052003.1| Homo sapiens protein phosphatase 4, regulatory subunit 1 (PPP4R1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|391224434|ref|NR_052003.1| Homo sapiens protein phosphatase 4, regulatory subunit 1 (PPP4R1), transcript variant 3, non-coding RNA"	Chr18	  9549789	  9550735	-	9989	NR_052003.1	NA	NA	NA	NA	NA	inter
CUST_34804_PI429285431	1.8423265	A	2.6613452	A	0.566827359209098	0	lncRNA	36240-1_{1..3000}	n341711|BX647080|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4183|NULL|-1.0089700|-0.3213459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341711|BX647080|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4183|NULL|-1.0089700|-0.3213459	chr9	 85882089	 85885088	+	NA	NA	NA	NA	FRMD3	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20chr9:85872089-85895748"	NA	inner
CUST_28218_PI429285431	7.6819496	P	8.119247	P	0.738516776794394	0	lncRNA	29851-1_{1..549}	n325505|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322402|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322402|-1.2065000|-0.3632067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325505|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322402|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322402|-1.2065000|-0.3632067	chr2	   378411	   378959	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50465_PI429285431	2.2174375	A	2.8755314	P	0.633715013369841	0	lncRNA	54169-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030535 range=chrX:73465729-73495795 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030535 range=chrX:73465729-73495795 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 73465729	 73468728	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17092_PI429285431	0.8996499	A	0.89542323	A	1.00293400017167	0	lncRNA	18800-1_{1..1726}	lnc-ZNF724P-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF724P-2:1	chr19	 23206148	 23207873	-	lnc-ZNF724P-2	lnc-ZNF724P-2:1	XLOC_013272	linc-ZNF99-4	NA	NA	NA	inter
CUST_24646_PI429285431	0.8955008	A	0.9003652	A	0.996633932804221	0	lncRNA	26195-1_{1..270}	lnc-RP11-763F8.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-763F8.1.1-1:1	chr4	 92033750	 92034019	-	lnc-RP11-763F8.1.1-1	lnc-RP11-763F8.1.1-1:1	ENSG00000248984.1	AC004054.1	FAM190A	NA	chr4:92023750-92043941	inner
CUST_10592_PI429285431	0.90313977	A	0.9114041	A	0.994287978943303	0	lncRNA	12122-1_{1..645}	lnc-TSN-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSN-5:1	chr2	123006098	123006742	+	lnc-TSN-5	lnc-TSN-5:1	XLOC_001648	linc-CNTNAP5-8	NA	NA	NA	inter
LNCA_21_P0007813	2.0911863	A	1.0339869	A	2.08088812009896	0	lncRNA	TCONS_00021461	NA	NA	NA	NA	XLOC_010275	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010275), lincRNA [TCONS_00021461]"	chr12:133172240-133170014	hs|12q24.33	Agilent_HUMAN_G3V2	TCONS_00021461	TCONS_00021461	chr12	133170014	133172240	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34720_PI429285431	2.8914652	A	2.9057488	A	0.990148212890771	0	lncRNA	36167-1_{1..3000}	n341627|BC039302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4098|NULL|-0.4661510|-0.1361449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341627|BC039302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4098|NULL|-0.4661510|-0.1361449	chr8	143485012	143488011	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20447_PI429285431	0.90536225	A	0.9677554	A	0.957674206082514	0	lncRNA	22091-1_{1..2598}	lnc-NPIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NPIP-1:1	chr16	 15201285	 15203882	+	lnc-NPIP-1	lnc-NPIP-1:1	ENSG00000260735.1	RP11-72I8.1	NA	NA	NA	inter
CUST_27421_PI429285431	4.270201	P	4.4638934	P	0.874365025717201	0	lncRNA	28986-1_{1..276}	n324591|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039868|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039868|-1.4670500|-0.3134923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324591|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039868|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039868|-1.4670500|-0.3134923	chr6	 12098561	 12098836	-	NA	NA	NA	NA	HIVEP1	NA	chr6:12088561-12110231	inner
CUST_22328_PI429285431	1.5593202	A	0.91571766	A	1.56222531066975	0	lncRNA	23927-1_{1..437}	lnc-IL23A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL23A-1:1	chr12	 56703104	 56703540	+	lnc-IL23A-1	lnc-IL23A-1:1	ENSG00000257740.1	RP11-977G19.12	CS	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00chr12:56693104-56694175"	NA	inter
CUST_10755_PI429285431	7.7001104	P	7.9837775	P	0.82150023899262	0	lncRNA	12291-1_{1..626}	lnc-PRMT6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRMT6-2:2	chr1	106994835	106995460	+	lnc-PRMT6-2	lnc-PRMT6-2:2	XLOC_000329	linc-PRMT6-2	NA	NA	NA	inter
CUST_8908_PI429285431	0.89313257	A	0.9120514	A	0.986972074093364	0	lncRNA	10443-1_{1..888}	lnc-CAMK1G-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CAMK1G-1:3	chr1	209605549	209606436	+	lnc-CAMK1G-1	lnc-CAMK1G-1:3	ENSG00000230937	CTA-55I10.1	LOC642587	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50chr1:209602168-209605894"	NA	inter
CUST_6807_PI429285431	7.636807	P	8.072846	P	0.739161233813358	0	lncRNA	6755-1_{1..727}	"transcript_id ""ENST00000419431.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000419431.2"" | genecode_v17"	chr21	 23470936	 23471662	+	ENSG00000184856.6	ENST00000419431.2	LINC00308	LINC00308-001	NA	NA	NA	inter
CUST_21626_PI429285431	6.507831	P	5.5663857	P	1.92045119407521	0	lncRNA	23238-1_{1..575}	lnc-KAT7-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KAT7-4:1	chr17	 47796990	 47797564	+	lnc-KAT7-4	lnc-KAT7-4:1	ENSG00000250751.1	RP11-613C6.2	FAM117A	"hg19_refFlat_FAM117A:range=chr17:47788617-478414495'pad=0,hg19_refFlat_FAM117A:range=chr17:47788617-478414495'pad=0 3'pad=0 strand=- repeatMasking=none,-97.60chr17:47787687-47807422"	NA	inner
CUST_44142_PI429285431	0.9450451	A	0.9125662	A	1.02276798024144	0	lncRNA	48805-1_{1..2689}	"gi|109150423|ref|NR_003090.1| Homo sapiens myelin-associated oligodendrocyte basic protein (MOBP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|109150423|ref|NR_003090.1| Homo sapiens myelin-associated oligodendrocyte basic protein (MOBP), non-coding RNA"	Chr3	 39509064	 39511752	+	4336	NR_003090.2	NA	NA	NA	NA	NA	inter
CUST_30647_PI429285431	0.8951632	A	0.90706164	A	0.991786546114032	0	lncRNA	32429-1_{1..453}	n336026|X81740|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323869|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323869|2.8234300|-0.0524246	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336026|X81740|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323869|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323869|2.8234300|-0.0524246	chr14	106329408	106329860	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40914_PI429285431	1.1069744	A	1.2039702	A	0.934977919672191	0	lncRNA	41600-1_{1..377}	n410757|NR_038209|lncRNA|Homosapiens||RefGeneNoncode|NR_038209||-1.1268000|-0.2659200	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410757|NR_038209|lncRNA|Homosapiens||RefGeneNoncode|NR_038209||-1.1268000|-0.2659200	chr8	 96281063	 96281439	+	NA	NA	NA	NA	C8orf37	NA	chr8:96271063-96281462	inter
CUST_30858_PI429285431	0.9005499	A	0.9185226	A	0.987619549912339	0	lncRNA	32646-1_{1..270}	n336855|AY566846|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331938_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331938_07|-1.2567600|-0.4194018	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336855|AY566846|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331938_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331938_07|-1.2567600|-0.4194018	chr6	   928312	   928581	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45570_PI429285431	0.89743775	A	0.911765	A	0.990118255543968	0	lncRNA	49966-3_{6001..6661}	"gi|211971053|ref|NR_024380.1| Homo sapiens zinc finger protein 91 pseudogene (LOC441666), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|211971053|ref|NR_024380.1| Homo sapiens zinc finger protein 91 pseudogene (LOC441666), non-coding RNA"	Chr10	 42833314	 42833974	-	441666	NR_024380.1	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_50504_PI429285431	5.0238743	P	5.504571	P	0.716631467888081	0	lncRNA	54200-1_{1..225}	hg19_lincRNAsTranscripts_TCONS_l2_00030324 range=chrX:106789477-106793311 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030324 range=chrX:106789477-106793311 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	106789477	106789701	+	NA	NA	NA	NA	FRMPD3	NA	chrX:106779477-106803311	inter
CUST_39731_PI429285431	3.357408	P	3.8908007	P	0.690928007823574	0	lncRNA	40659-2_{3001..3298}	n405703|NR_002940|lncRNA|Homosapiens||RefGeneNoncode|NR_002940||0.4433670|-0.2578985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405703|NR_002940|lncRNA|Homosapiens||RefGeneNoncode|NR_002940||0.4433670|-0.2578985	chr17	  1484376	  1484673	+	NA	NA	NA	NA	SLC43A2	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_SLC43A2:range=chr17:1478898-15311685'pad=0,hg19_refFlat_SLC43A2:range=chr17:1478898-15311685'pad=0 3'pad=0 strand=- repeatMasking=none,-93.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90chr17:1477696-1499848"	NA	inner
CUST_29253_PI429285431	0.89166045	A	0.8979362	A	0.995659429207641	0	lncRNA	31004-1_{1..409}	n332345|FJ458441|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558607|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558607|-1.0953700|-0.1513550	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332345|FJ458441|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558607|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558607|-1.0953700|-0.1513550	chr8	 17658107	 17658515	-	NA	NA	NA	NA	MTUS1	NA	chr8:17648107-17658426	inner
CUST_47505_PI429285431	10.158328	P	9.617632	P	1.45467412714356	0	lncRNA	51517-2_{3001..3385}	"gi|209529685|ref|NR_024210.1| Homo sapiens ring finger protein 185 (RNF185), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209529685|ref|NR_024210.1| Homo sapiens ring finger protein 185 (RNF185), transcript variant 5, non-coding RNA"	Chr22	 31559138	 31559522	+	91445	NR_024210.1	NA	NA	NA	NA	NA	inter
CUST_48539_PI429285431	5.2573752	P	4.1430817	P	2.16488966658898	0	lncRNA	52388-1_{1..1341}	hg19_lincRNAsTranscripts_TCONS_l2_00013889 range=chr2:110988627-111024103 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013889 range=chr2:110988627-111024103 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	110988627	110989967	+	NA	NA	NA	NA	LOC100287119	NA	chr2:111025028-111034103	inter
CUST_50386_PI429285431	0.91030675	A	1.2475121	A	0.791573187087204	0	lncRNA	54094-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030616 range=chrX:135892212-135930743 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030616 range=chrX:135892212-135930743 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	135892212	135895211	-	NA	NA	NA	NA	NA	"hg19_refFlat_RAB28:range=chr4:13371500-134857745'pad=0,hg19_refFlat_RAB28:range=chr4:13371500-134857745'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RAB28:range=chr4:13370182-134857745'pad=0,hg19_refFlat_RAB28:range=chr4:13370182-134857745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RAB28:range=chr4:13373450-134857745'pad=0,hg19_refFlat_RAB28:range=chr4:13373450-134857745'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00"	NA	inter
CUST_44214_PI429285431	4.625188	P	3.3235793	A	2.46503597226049	0	lncRNA	48866-2_{3001..3695}	"gi|209977063|ref|NR_024265.1| Homo sapiens protein O-glucosyltransferase 1 (POGLUT1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209977063|ref|NR_024265.1| Homo sapiens protein O-glucosyltransferase 1 (POGLUT1), transcript variant 2, non-coding RNA"	Chr3	119190785	119191479	+	56983	NR_024265.1	NA	NA	NA	NA	NA	inter
CUST_25424_PI429285431	5.5627065	P	5.728728	P	0.891297213094765	0	lncRNA	26954-1_{1..491}	lnc-CHSY1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHSY1-4:1	chr15	101589594	101590084	-	lnc-CHSY1-4	lnc-CHSY1-4:1	ENSG00000259376.1	RP11-505E24.3	LRRK1	NA	chr15:101579594-101599661	inner
CUST_11350_PI429285431	1.1010892	A	0.91926616	A	1.13431634192562	0	lncRNA	12913-1_{1..1194}	lnc-TMCO5A-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMCO5A-1:11	chr15	 38352100	 38353293	+	lnc-TMCO5A-1	lnc-TMCO5A-1:11	XLOC_011213	linc-SPRED1	NA	NA	NA	inter
CUST_94_PI429201921	0.9168706	A	0.9106951	A	1.00428970496984	0	lncRNA	97-1_{1..2748}	TC10002060.hg.1	TCONS_l2_00003975-XLOC_l2_001590 // Broad TUCP // linc-AGAP9-6 chr10:+:48155942-48158691 // chr10 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr10:+:48155942-48158691	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00003975-XLOC_l2_001590	linc-AGAP9-6	chr10	 48155942	 48158691	+	NA	NA	NA	NA	LOC100288646	NA	chr1:327463-342507	Unknown
CUST_6271_PI429285431	0.90843904	A	0.9143321	A	0.995923573352169	0	lncRNA	6195-1_{1..562}	"transcript_id ""ENST00000583629.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583629.1"" | genecode_v17"	chr18	 75133575	 75134136	+	ENSG00000264015.1	ENST00000583629.1	RP11-176N18.2	RP11-176N18.2-001	NA	NA	NA	inter
CUST_4870_PI429285431	1.6692538	A	2.3192525	A	0.637280887907658	0	lncRNA	4813-1_{1..564}	"transcript_id ""ENST00000557050.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557050.1"" | genecode_v17"	chr14	 66578353	 66578916	+	ENSG00000258502.1	ENST00000557050.1	RP11-783L4.1	RP11-783L4.1-002	NA	NA	NA	inter
CUST_38014_PI429285431	1.1841536	A	0.910932	A	1.2085034569756	0	lncRNA	39099-1_{1..2780}	n377587|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029952||-0.7380840|-0.1691912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377587|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029952||-0.7380840|-0.1691912	chr6	   350247	   353026	-	NA	NA	NA	NA	DUSP22	"hg19_refFlat_DUSP22:range=chr6:292540-3508685'pad=0,hg19_refFlat_DUSP22:range=chr6:292540-3508685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90chr6:340247-351355"	NA	inner
CUST_12433_PI429285431	4.3186345	P	4.7676	P	0.732567955416952	0	lncRNA	14046-1_{1..2051}	lnc-SLC39A11-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC39A11-3:6	chr17	 70030040	 70032090	-	lnc-SLC39A11-3	lnc-SLC39A11-3:6	XLOC_012564	linc-ABCA5-7	NA	NA	NA	inter
CUST_15532_PI429285431	7.0720663	P	6.9312105	P	1.10255895478327	0	lncRNA	17217-1_{1..453}	lnc-KHDRBS3-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KHDRBS3-4:7	chr8	135854697	135855149	+	lnc-KHDRBS3-4	lnc-KHDRBS3-4:7	XLOC_006935	linc-KHDRBS3-3	NA	NA	NA	inter
CUST_18676_PI429285431	1.6427778	A	1.1722013	A	1.38566306755512	0	lncRNA	20377-1_{1..1756}	lnc-SHE-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SHE-2:1	chr1	154378915	154380670	-	lnc-SHE-2	lnc-SHE-2:1	ENSG00000228013	RP11-350G8.5	IL6R	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60chr1:154368915-154389040"	NA	inner
CUST_49351_PI429285431	10.595177	P	10.459208	P	1.09883060613177	0	lncRNA	53164-1_{1..942}	hg19_lincRNAsTranscripts_TCONS_l2_00022387 range=chr5:79314789-79315919 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022387 range=chr5:79314789-79315919 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 79314789	 79315730	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15359_PI429285431	0.8896769	A	0.8938681	A	0.997099097310051	0	lncRNA	17043-1_{1..308}	lnc-FGD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGD4-1:1	chr12	 32810749	 32811056	+	lnc-FGD4-1	lnc-FGD4-1:1	XLOC_009705	linc-DNM1L	NA	NA	NA	inter
CUST_37276_PI429285431	0.9163137	A	1.605778	A	0.620084056184206	0	lncRNA	38385-1_{1..1061}	n345717|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1266|NULL|-1.3192800|-0.2264543	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345717|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1266|NULL|-1.3192800|-0.2264543	chr8	 38400830	 38401890	-	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40"	NA	inter
LNCA_21_P0007931	4.316103	P	4.4753933	P	0.895465465838991	0	lncRNA	ENST00000455241	NA	NA	NA	NA	XLOC_010356	NA	ENST00000455241	NA	NA	"BROAD Institute lincRNA (XLOC_010356), lincRNA [TCONS_00021540]"	chr13:40763094-40763153	hs|13q14.11	Agilent_HUMAN_G3V2	ENST00000455241	ENST00000455241	chr13	 40763094	 40763153	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28446_PI429285431	5.073109	P	5.475665	P	0.756516786419102	0	lncRNA	30106-1_{1..539}	n325772|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044354|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044354|-1.1010900|-0.3787136	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325772|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044354|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044354|-1.1010900|-0.3787136	chr13	 29846139	 29846677	-	NA	NA	NA	NA	MTUS2	NA	chr13:29836139-29859101	inner
CUST_41385_PI429285431	3.0707889	P	3.5717938	P	0.706614421977097	0	lncRNA	42487-1_{1..96}	ENST00000384984 ncrna:miRNA chromosome:GRCh37:3:168269642:168269737:1 gene:ENSG00000207717 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384984 ncrna:miRNA chromosome:GRCh37:3:168269642:168269737:1 gene:ENSG00000207717 gene_biotype:miRNA transcript_biotype:miRNA	chr3	168269642	168269737	+	ENSG00000207717	ENST00000384984	NA	NA	NA	NA	NA	inter
CUST_39323_PI429285431	3.948837	P	4.2337127	P	0.820812325472067	0	lncRNA	40289-1_{1..1188}	n386372|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ith.1||0.3979280|-0.2029280	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386372|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ith.1||0.3979280|-0.2029280	chr5	  1602030	  1603217	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005631	3.049807	P	0.9066476	A	4.41728341700219	0	lncRNA	ENST00000523173	NA	BC014119	NA	NA	XLOC_007219	NA	ENST00000523173	NA	NA	"BROAD Institute lincRNA (XLOC_007219), lincRNA [TCONS_00014537]"	chr8:129571746-129571687	hs|8q24.21	Agilent_HUMAN_G3V2	ENST00000523173	ENST00000523173	chr8	129571687	129571746	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33478_PI429285431	1.9611108	A	1.6947626	A	1.20275950450457	0	lncRNA	35052-1_{1..3000}	n340214|BC045668|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2675|NULL|-0.9369550|-0.2738103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n340214|BC045668|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2675|NULL|-0.9369550|-0.2738103	chr4	123540137	123543136	+	NA	NA	NA	NA	IL21	"hg19_refFlat_IL21:range=chr4:123533865-1235421665'pad=0,hg19_refFlat_IL21:range=chr4:123533865-1235421665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_IL21:range=chr4:123533982-1235421665'pad=0,hg19_refFlat_IL21:range=chr4:123533982-1235421665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr4:123533783-123542211"	NA	inner
CUST_16164_PI429285431	4.7381587	P	4.9125533	P	0.886139292879156	0	lncRNA	17870-1_{1..441}	lnc-C9orf50-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf50-4:2	chr9	132213558	132213998	-	lnc-C9orf50-4	lnc-C9orf50-4:2	XLOC_007867	linc-IER5L-4	NA	NA	NA	inter
CUST_3508_PI429285431	4.310373	P	4.3964715	P	0.942066952090452	0	lncRNA	3479-1_{1..1686}	"transcript_id ""ENST00000435485.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435485.1"" | genecode_v17"	chr9	109040673	109042358	+	ENSG00000234323.1	ENST00000435485.1	RP11-308N19.1	RP11-308N19.1-002	NA	NA	NA	inter
CUST_44220_PI429285431	1.4309151	A	2.1213586	A	0.619663329502871	0	lncRNA	48871-1_{1..2428}	"gi|254826754|ref|NR_028136.1| Homo sapiens kalirin, RhoGEF kinase (KALRN), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254826754|ref|NR_028136.1| Homo sapiens kalirin, RhoGEF kinase (KALRN), transcript variant 4, non-coding RNA"	Chr3	123813558	123815985	+	8997	NR_028136.1	NA	NA	NA	NA	NA	inter
CUST_1565_PI429285431	1.6336485	A	1.6815733	A	0.967326749885515	0	lncRNA	1553-1_{1..437}	"transcript_id ""ENST00000445673.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445673.1"" | genecode_v17"	chr3	177335378	177335814	+	ENSG00000228221.1	ENST00000445673.1	LINC00578	LINC00578-003	NA	NA	NA	inter
CUST_17648_PI429285431	1.0633217	A	1.0846097	A	0.985352614921147	0	lncRNA	19377-1_{1..524}	lnc-TRIML2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIML2-3:1	chr4	188534640	188535163	-	lnc-TRIML2-3	lnc-TRIML2-3:1	XLOC_004221	linc-FAT1-5	NA	NA	NA	inter
CUST_31043_PI429285431	12.258692	P	12.678098	P	0.747732424389284	0	lncRNA	32833-1_{1..278}	n337263|BC127843|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389462|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389462|-1.0044700|-0.2209057	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337263|BC127843|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389462|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389462|-1.0044700|-0.2209057	chr19	  7694693	  7694970	+	NA	NA	NA	NA	STXBP2	NA	chr19:7701991-7706475	inter
LNCA_21_P0009567	0.8970366	A	0.89575684	A	1.00088745559168	0	lncRNA	TCONS_00026545	NA	NA	NA	NA	XLOC_012866	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012866), lincRNA [TCONS_00026545]"	chr18:62539216-62539157	hs|18q22.1	Agilent_HUMAN_G3V2	TCONS_00026545	TCONS_00026545	chr18	 62539157	 62539216	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37489_PI429285431	0.8975168	A	0.90860754	A	0.992341958209334	0	lncRNA	38590-1_{1..740}	n345950|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1499|NULL|-1.3070300|-0.2861845	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345950|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1499|NULL|-1.3070300|-0.2861845	chr14	 22930054	 22930793	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13408_PI429285431	1.0618564	A	0.89165187	A	1.12521799485366	0	lncRNA	15045-1_{1..611}	lnc-RP4-725G10.1.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP4-725G10.1.1-3:2	chr7	 56551406	 56552016	-	lnc-RP4-725G10.1.1-3	lnc-RP4-725G10.1.1-3:2	XLOC_006456	linc-LOC389493-1	NA	NA	NA	inter
CUST_617_PI429285431	3.5044563	P	3.0860977	A	1.33640621768568	0	lncRNA	609-1_{1..443}	"transcript_id ""ENST00000430542.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430542.1"" | genecode_v17"	chr1	240078739	240079181	-	ENSG00000231979.1	ENST00000430542.1	RP11-35L17.3	RP11-35L17.3-001	CHRM3	NA	chr1:240068739-240072720	inter
CUST_24770_PI429285431	0.8916601	A	0.9089398	A	0.988094067905406	0	lncRNA	26314-1_{1..379}	lnc-NKAIN2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKAIN2-1:3	chr6	123789945	123790323	+	lnc-NKAIN2-1	lnc-NKAIN2-1:3	ENSG00000235535.1	RP11-532N4.2	TRDN	NA	chr6:123779945-123800075	inner
CUST_34379_PI429285431	2.3863637	A	2.496484	A	0.926510801004751	0	lncRNA	35865-1_{1..2873}	n341248|AK097412|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3716|NULL|1.1610800|-0.1925650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341248|AK097412|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3716|NULL|1.1610800|-0.1925650	chr7	 50850752	 50853624	+	NA	NA	NA	NA	GRB10	NA	chr7:50840752-50861159	inner
CUST_49381_PI429285431	0.89929205	A	1.1024312	A	0.868658397765184	0	lncRNA	53195-1_{1..849}	hg19_lincRNAsTranscripts_TCONS_l2_00023089 range=chr5:126387205-126409276 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023089 range=chr5:126387205-126409276 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	126387205	126388053	-	NA	NA	NA	NA	C5orf63	NA	chr5:126378250-126409184	inner
LNCA_21_P0009861	1.640155	A	1.0481057	A	1.50738641932215	0	lncRNA	ENST00000450623	NA	NA	NA	NA	XLOC_013573	NA	ENST00000450623	THC2652828	NA	"BROAD Institute lincRNA (XLOC_013573), lincRNA [TCONS_00027957]"	chr20:54043226-54043285	hs|20q13.2	Agilent_HUMAN_G3V2	ENST00000450623	ENST00000450623	chr20	 54043226	 54043285	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43994_PI429285431	2.5192323	A	2.4822385	A	1.02597373619269	0	lncRNA	48691-1_{1..2992}	"gi|371122873|ref|NR_045786.1| Homo sapiens uncharacterized LOC100861402 (LOC100861402), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|371122873|ref|NR_045786.1| Homo sapiens uncharacterized LOC100861402 (LOC100861402), transcript variant 1, non-coding RNA"	Chr2	169628461	169631452	-	100861402	NR_045786.1	NA	NA	NA	NA	NA	inter
CUST_6332_PI429285431	0.8923482	A	1.371671	A	0.717314251781948	0	lncRNA	6256-1_{1..3000}	"transcript_id ""ENST00000344893.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000344893.3"" | genecode_v17"	chr19	 11750591	 11753590	+	ENSG00000197332.7	ENST00000344893.3	ZNF833P	ZNF833P-001	NA	NA	NA	inter
CUST_44722_PI429285431	3.3553185	A	3.5236902	A	0.889846441181121	0	lncRNA	49276-2_{3001..4070}	"gi|323276625|ref|NR_037846.1| Homo sapiens MSH5-SAPCD1 readthrough (non-protein coding) (MSH5-SAPCD1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|323276625|ref|NR_037846.1| Homo sapiens MSH5-SAPCD1 readthrough (non-protein coding) (MSH5-SAPCD1), non-coding RNA"	Chr6	 31710725	 31711794	+	100532732	NR_037846.1	NA	NA	NA	NA	NA	inter
CUST_4205_PI429285431	0.9152441	A	0.91846484	A	0.997770043205836	0	lncRNA	4164-1_{1..486}	"transcript_id ""ENST00000544399.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544399.1"" | genecode_v17"	chr12	 26035888	 26036373	-	ENSG00000256256.1	ENST00000544399.1	RP11-443N24.4	RP11-443N24.4-001	NA	NA	NA	inter
CUST_40476_PI429285431	1.4322222	A	2.0911863	A	0.633332886510803	0	lncRNA	41243-2_{3001..3330}	n409408|NR_033807|lncRNA|Homosapiens||RefGeneNoncode|NR_033807||5.7123500|-0.2902576	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409408|NR_033807|lncRNA|Homosapiens||RefGeneNoncode|NR_033807||5.7123500|-0.2902576	chr7	 99248812	 99249141	-	NA	NA	NA	NA	CYP3A5	NA	chr7:99245813-99277621	inner
CUST_11440_PI429285431	1.1709108	A	0.97878706	A	1.14244423012479	0	lncRNA	13008-1_{1..1065}	lnc-FRG1-4:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRG1-4:8	chr4	190497379	190498443	+	lnc-FRG1-4	lnc-FRG1-4:8	XLOC_003840	linc-FRG1-4	NA	NA	NA	inter
CUST_4822_PI429285431	3.307426	P	2.9309642	P	1.29815423359826	0	lncRNA	4765-1_{1..392}	"transcript_id ""ENST00000555801.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555801.1"" | genecode_v17"	chr14	 51827436	 51827827	+	ENSG00000258479.1	ENST00000555801.1	LINC00640	LINC00640-004	NA	NA	NA	inter
CUST_13150_PI429285431	1.2082119	A	0.8999028	A	1.23825556089388	0	lncRNA	14777-1_{1..394}	lnc-TK2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TK2-3:1	chr16	 66300838	 66301231	-	lnc-TK2-3	lnc-TK2-3:1	XLOC_011981	linc-CDH11-1	NA	NA	NA	inter
LNCA_21_P0001033	0.89418733	A	0.89016604	A	1.00279123408589	0	lncRNA	ENST00000428646	NA	NA	NA	NA	XLOC_000483	NA	ENST00000428646	NA	NA	"BROAD Institute lincRNA (XLOC_000483), lincRNA [TCONS_00000346]"	chr1:182059188-182059247	hs|1q25.3	Agilent_HUMAN_G3V2	ENST00000428646	ENST00000428646	chr1	182059188	182059247	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10046_PI429285431	0.9039863	A	0.8952252	A	1.00609120818098	0	lncRNA	11571-1_{1..481}	lnc-SLC15A4-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC15A4-1:4	chr12	128675723	128676203	-	lnc-SLC15A4-1	lnc-SLC15A4-1:4	XLOC_010258	linc-DHX37-12	NA	NA	NA	inter
LNCA_21_P0003807	3.1762412	P	3.7292445	P	0.681599744557965	0	lncRNA	TCONS_00008680	NA	NA	NA	NA	XLOC_004196	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004196), lincRNA [TCONS_00008680]"	chr4:183994275-183994216	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00008680	TCONS_00008680	chr4	183994216	183994275	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51626_PI429285431	0.8897925	A	1.1035545	A	0.862285783733222	0	lncRNA	55197-1_{1..2090}	hg19_lincRNAsTranscripts_TCONS_l2_00011250 range=chr17:41454044-41466296 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011250 range=chr17:41454044-41466296 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 41454044	 41456133	-	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50"	NA	inter
CUST_1175_PI429285431	0.890942	A	0.9166626	A	0.98232982006398	0	lncRNA	1164-1_{1..2058}	"transcript_id ""ENST00000565104.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565104.1"" | genecode_v17"	chr2	179265561	179267618	+	ENSG00000260931.1	ENST00000565104.1	RP11-65L3.1	RP11-65L3.1-001	OSBPL6	"hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr2:179255561-179264160"	NA	inter
CUST_48901_PI429285431	11.320296	P	10.852531	P	1.38296534000918	0	lncRNA	52742-1_{1..1623}	hg19_lincRNAsTranscripts_TCONS_l2_00019469 range=chr3:112414256-112416513 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019469 range=chr3:112414256-112416513 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	112414256	112415878	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18149_PI429285431	1.4653214	A	1.7461977	A	0.823090915966594	0	lncRNA	19884-1_{1..3000}	lnc-RXFP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RXFP2-1:2	chr13	 32524296	 32527295	+	lnc-RXFP2-1	lnc-RXFP2-1:2	ENSG00000229715	EEF1DP3	NA	NA	NA	inter
CUST_50413_PI429285431	1.0193356	A	0.89840066	A	1.08743935041501	0	lncRNA	54117-1_{1..396}	hg19_lincRNAsTranscripts_TCONS_l2_00030134 range=chrX:2541206-2544744 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030134 range=chrX:2541206-2544744 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	  2541206	  2541601	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14193_PI429285431	1.1561835	A	1.9227024	A	0.587834158412799	0	lncRNA	15845-1_{1..1203}	lnc-BPIFA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-BPIFA3-1:1	chr20	 31797845	 31799047	+	lnc-BPIFA3-1	lnc-BPIFA3-1:1	XLOC_013508	linc-C20orf71	C20orf71	NA	chr20:31805135-31808268	inter
CUST_14777_PI429285431	0.8902611	A	0.88895667	A	1.0009045708544	0	lncRNA	16438-1_{1..1366}	lnc-TMEM132B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132B-2:1	chr12	126527801	126529166	+	lnc-TMEM132B-2	lnc-TMEM132B-2:1	XLOC_009934	linc-TMEM132C-15	NA	NA	NA	inter
CUST_13152_PI429285431	0.9004704	A	1.0717844	A	0.888033495902501	0	lncRNA	14779-1_{1..1194}	lnc-SEPT9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEPT9-1:1	chr17	 75266276	 75267469	+	lnc-SEPT9-1	lnc-SEPT9-1:1	XLOC_012315	linc-SEPT9	NA	NA	NA	inter
CUST_19821_PI429285431	0.8883751	A	0.8892187	A	0.999415431964989	0	lncRNA	21478-1_{1..584}	lnc-LPHN3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-LPHN3-4:1	chr4	 61655533	 61656116	+	lnc-LPHN3-4	lnc-LPHN3-4:1	ENSG00000249066.1	RP11-593F5.2	NA	NA	NA	inter
CUST_25127_PI429285431	4.4540186	P	4.864726	P	0.752254428604229	0	lncRNA	26665-1_{1..315}	lnc-IQSEC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IQSEC3-1:1	chr12	   303127	   303441	+	lnc-IQSEC3-1	lnc-IQSEC3-1:1	ENSG00000255671.1	RP11-283I3.1	SLC6A12	NA	chr12:299243-313296	inner
CUST_13336_PI429285431	0.8952093	A	1.0663581	A	0.88813518858808	0	lncRNA	14973-1_{1..636}	lnc-ST8SIA4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ST8SIA4-2:2	chr5	 99993523	 99994158	-	lnc-ST8SIA4-2	lnc-ST8SIA4-2:2	XLOC_004939	linc-CHD1-1	NA	NA	NA	inter
CUST_1646_PI429285431	0.90487015	A	0.8955469	A	1.00648331071111	0	lncRNA	1631-1_{1..694}	"transcript_id ""ENST00000417704.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417704.1"" | genecode_v17"	chr3	195435018	195435711	+	ENSG00000242086.3	ENST00000417704.1	AC069513.3	AC069513.3-009	MUC20	NA	chr3:195447753-195448746	inter
CUST_23246_PI429285431	0.8882911	A	1.0325654	A	0.904834410115031	0	lncRNA	24818-1_{1..534}	lnc-PPIC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPIC-1:1	chr5	122425767	122426300	-	lnc-PPIC-1	lnc-PPIC-1:1	ENSG00000223652.2	AC106786.1	PRDM6	"hg19_refFlat_PRDM6:range=chr5:122425710-1225228955'pad=0,hg19_refFlat_PRDM6:range=chr5:122425710-1225228955'pad=0 3'pad=0 strand=+ repeatMasking=none,-110.50chr5:122424841-122435994"	NA	inner
CUST_538_PI429285431	3.9751678	P	4.215624	P	0.846477602186333	0	lncRNA	530-1_{1..662}	"transcript_id ""ENST00000432488.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432488.1"" | genecode_v17"	chr1	198985262	198985923	+	ENSG00000235492.1	ENST00000432488.1	RP11-16L9.4	RP11-16L9.4-001	NA	NA	NA	inter
CUST_24632_PI429285431	2.9139683	P	2.7025254	A	1.15784561511756	0	lncRNA	26181-1_{1..2357}	lnc-LCN6-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LCN6-1:3	chr9	139622333	139624689	-	lnc-LCN6-1	lnc-LCN6-1:3	ENSG00000233016.1	SNHG7	FAM69B	"hg19_refFlat_FAM69B:range=chr9:139607118-1396182265'pad=0,hg19_refFlat_FAM69B:range=chr9:139607118-1396182265'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.60chr9:139612333-139619170"	NA	inter
CUST_6502_PI429285431	3.5623283	P	3.6277032	P	0.955696937077787	0	lncRNA	6444-1_{1..560}	"transcript_id ""ENST00000586176.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586176.1"" | genecode_v17"	chr19	 37994808	 37995367	-	ENSG00000267115.1	ENST00000586176.1	CTD-3064H18.2	CTD-3064H18.2-001	ZNF793	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20chr19:37997841-38005367"	NA	inter
CUST_8726_PI429285431	1.4943236	A	1.253613	A	1.18157450310279	0	lncRNA	10269-1_{1..2411}	lnc-NT5DC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NT5DC2-1:1	chr3	 52573952	 52576362	-	lnc-NT5DC2-1	lnc-NT5DC2-1:1	ENSG00000245797	ENST00000500038	NT5DC2	"hg19_refFlat_SMIM4:range=chr3:52570772-525745015'pad=0,hg19_refFlat_SMIM4:range=chr3:52570772-525745015'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.90chr3:52563952-52569093"	NA	inner
CUST_51569_PI429285431	6.612116	P	6.9060473	P	0.815676334277933	0	lncRNA	55134-1_{1..500}	hg19_lincRNAsTranscripts_TCONS_l2_00011530 range=chr17:19483256-19499371 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011530 range=chr17:19483256-19499371 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 19483256	 19483755	+	NA	NA	NA	NA	ALDH3A2	NA	chr17:19506587-19509371	inter
CUST_48512_PI429285431	5.640278	P	5.2828584	P	1.28113241753956	0	lncRNA	52365-1_{1..380}	hg19_lincRNAsTranscripts_TCONS_l2_00014800 range=chr2:112101665-112252712 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014800 range=chr2:112101665-112252712 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	112101665	112102044	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12254_PI429285431	1.0577633	A	0.9046564	A	1.11196154796158	0	lncRNA	13860-1_{1..1635}	lnc-SLC44A3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC44A3-1:1	chr1	 95432794	 95434428	+	lnc-SLC44A3-1	lnc-SLC44A3-1:1	XLOC_000304	linc-TMEM56-3	NA	NA	NA	inter
CUST_31611_PI429285431	1.2317873	A	1.6936285	A	0.726059054160583	0	lncRNA	33367-1_{1..414}	n338125|AF086509|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|513|NULL|-1.0119000|-0.2783579	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338125|AF086509|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|513|NULL|-1.0119000|-0.2783579	chr1	110856617	110857030	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_52085_PI429285431	3.5150857	P	2.625909	A	1.85211887702903	0	lncRNA	55613-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017551 range=chr22:17082492-17134956 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017551 range=chr22:17082492-17134956 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17082492	 17085491	+	NA	NA	NA	NA	CCT8L2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PARP4:range=chr13:24995257-250779145'pad=0,hg19_refFlat_PARP4:range=chr13:24995257-250779145'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-57.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SLC25A15:range=chr13:41367363-413838035'pad=0,hg19_refFlat_SLC25A15:range=chr13:41367363-413838035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20chr22:17072492-17073700"	NA	inter
CUST_20541_PI429285431	5.113366	P	5.3297462	P	0.860722328369087	0	lncRNA	22182-1_{1..379}	lnc-SDSL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SDSL-2:1	chr12	113917988	113918366	+	lnc-SDSL-2	lnc-SDSL-2:1	ENSG00000257935.1	RP11-82C23.2	LHX5	NA	chr12:113907988-113909877	inter
CUST_10780_PI429285431	2.8636374	P	3.0020325	P	0.908529270322459	0	lncRNA	12315-1_{1..944}	lnc-BORA-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BORA-2:2	chr13	 71741818	 71742761	+	lnc-BORA-2	lnc-BORA-2:2	XLOC_010423	linc-C13orf34-2	NA	NA	NA	inter
CUST_15285_PI429285431	2.6623046	A	2.4618104	A	1.14909191285475	0	lncRNA	16962-1_{1..546}	lnc-MTHFSD-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTHFSD-2:5	chr16	 86542261	 86542806	-	lnc-MTHFSD-2	lnc-MTHFSD-2:5	XLOC_012046	linc-COX4NB-9	FOXF1	NA	chr16:86544133-86548070	inter
CUST_33557_PI429285431	0.886721	A	0.8872169	A	0.999656327382128	0	lncRNA	35124-1_{1..3000}	n340305|BC043231|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2766|NULL|-0.8103100|-0.1403976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340305|BC043231|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2766|NULL|-0.8103100|-0.1403976	chr5	  1725269	  1728268	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37523_PI429285431	0.897203	A	0.9153	A	0.987534462060583	0	lncRNA	38626-1_{1..1545}	n345996|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1545|NULL|-1.2876000|-0.2888884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345996|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1545|NULL|-1.2876000|-0.2888884	chr2	150488826	150490370	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011249	0.90041906	A	0.9192579	A	0.987026798122099	0	lncRNA	TCONS_l2_00007753	NA	NA	NA	NA	XLOC_l2_004208	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004208), lincRNA [TCONS_l2_00007753]"	chr14:60430339-60430398	hs|14q23.1	Agilent_HUMAN_G3V2	TCONS_l2_00007753	TCONS_l2_00007753	chr14	 60430339	 60430398	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3270369	9.808802	P	10.337336	P	0.693258833833354	0	lncRNA	XR_110039	XR_110039	XR_110039	NA	Hs.672522	NA	NA	NA	THC2489068	NA	"PREDICTED: Homo sapiens hypothetical LOC100128342 (LOC100128342), miscRNA [XR_110039]"	chr3:15504225-15504166	hs|3p25.1	Agilent_HUMAN_G3V2	XR_110039	XR_110039	chr3	 15504166	 15504225	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002983	2.9934576	P	3.115723	P	0.918743854653449	0	lncRNA	TCONS_00006105	NA	NA	NA	NA	XLOC_002716	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002716), lincRNA [TCONS_00006105]"	chr3:80820098-80837998	hs|3p12.2	Agilent_HUMAN_G3V2	TCONS_00006105	TCONS_00006105	chr3	 80820098	 80837998	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38418_PI429285431	7.4113846	P	7.220848	P	1.14118809361013	0	lncRNA	39448-1_{1..2234}	n382502|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zlf.1||1.4927400|-0.2702116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382502|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zlf.1||1.4927400|-0.2702116	chr15	 40616680	 40618913	+	NA	NA	NA	NA	C15orf52	NA	chr15:40623653-40628914	inter
CUST_48451_PI429285431	2.7398314	A	3.1275303	P	0.764347768173032	0	lncRNA	52306-1_{1..593}	hg19_lincRNAsTranscripts_TCONS_l2_00000794 range=chr1:209541777-209553165 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000794 range=chr1:209541777-209553165 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	209541777	209542369	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51761_PI429285431	1.949175	A	2.5242414	A	0.671255356169659	0	lncRNA	55312-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00012779 range=chr19:59086569-59117370 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012779 range=chr19:59086569-59117370 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 59092569	 59095568	+	NA	NA	NA	NA	MZF1	"hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr19:59076569-59084942"	NA	inter
CUST_46056_PI429285431	3.158764	P	3.6020837	P	0.735440381903028	0	lncRNA	50331-1_{1..917}	"gi|221139757|ref|NR_026658.1| Homo sapiens uncharacterized LOC100240735 (LOC100240735), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|221139757|ref|NR_026658.1| Homo sapiens uncharacterized LOC100240735 (LOC100240735), non-coding RNA"	Chr12	 54472623	 54473539	-	100240735	NR_026658.1	NA	NA	NA	NA	NA	inter
CUST_41383_PI429285431	5.3555098	P	5.5910635	P	0.849358956350693	0	lncRNA	42484-1_{1..88}	ENST00000385246 ncrna:miRNA chromosome:GRCh37:19:54216601:54216688:1 gene:ENSG00000207981 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385246 ncrna:miRNA chromosome:GRCh37:19:54216601:54216688:1 gene:ENSG00000207981 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54216601	 54216688	+	ENSG00000207981	ENST00000385246	NA	NA	NA	NA	NA	inter
LNCA_21_P0013178	0.9138865	A	0.9249055	A	0.99239130500829	0	lncRNA	THC2680431	NA	NA	NA	NA	XLOC_l2_013295	NA	NA	THC2680431	NA	"BROAD Institute lincRNA (XLOC_l2_013295), lincRNA [TCONS_l2_00025695]"	chr7:017506705-017506764	hs|7p21.1	Agilent_HUMAN_G3V2	THC2680431	THC2680431	chr7	 17506705	 17506764	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42841_PI429285431	7.3533635	P	7.6931276	P	0.790170504782238	0	lncRNA	45882-1_{1..133}	ENST00000362535 ncrna:snoRNA chromosome:GRCh37:8:56815282:56815414:-1 gene:ENSG00000199405 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362535 ncrna:snoRNA chromosome:GRCh37:8:56815282:56815414:-1 gene:ENSG00000199405 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	 56815282	 56815414	-	ENSG00000199405	ENST00000362535	NA	NA	LYN	NA	chr8:56805282-56825414	inner
CUST_17661_PI429285431	3.3633778	P	3.4477227	P	0.943212733407969	0	lncRNA	19390-1_{1..367}	lnc-MS4A8B-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MS4A8B-1:7	chr11	 60454383	 60454749	+	lnc-MS4A8B-1	lnc-MS4A8B-1:7	XLOC_009142	linc-MS4A8B	NA	NA	NA	inter
CUST_6794_PI429285431	1.0681185	A	0.91487795	A	1.11206456387319	0	lncRNA	6742-1_{1..636}	"transcript_id ""ENST00000433210.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433210.1"" | genecode_v17"	chr21	 20673930	 20674565	+	ENSG00000231620.1	ENST00000433210.1	AP000855.4	AP000855.4-001	NA	NA	NA	inter
CUST_10535_PI429285431	10.775711	P	10.600623	P	1.12903327029389	0	lncRNA	12064-1_{1..1872}	lnc-APBA1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APBA1-2:1	chr9	 72013650	 72015521	-	lnc-APBA1-2	lnc-APBA1-2:1	XLOC_007725	linc-PRKACG-2	FAM189A2	NA	chr9:72003650-72007370	inter
CUST_16135_PI429285431	0.96267843	A	1.1186655	A	0.897518094541143	0	lncRNA	17841-1_{1..376}	lnc-ANGPT2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANGPT2-6:1	chr8	  5757144	  5757519	-	lnc-ANGPT2-6	lnc-ANGPT2-6:1	XLOC_006982	linc-CSMD1-5	NA	NA	NA	inter
LNCA_21_P0004574	0.9118118	A	0.92231315	A	0.992747446477747	0	lncRNA	TCONS_00011030	NA	NA	NA	NA	XLOC_004984	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004984), lincRNA [TCONS_00011030]"	chr5:125530182-125530123	hs|5q23.2	Agilent_HUMAN_G3V2	TCONS_00011030	TCONS_00011030	chr5	125530123	125530182	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46212_PI429285431	4.385667	P	4.427687	P	0.971294030453927	0	lncRNA	50454-1_{1..544}	"gi|387528007|ref|NR_046511.1| Homo sapiens MED4 antisense RNA 1 (MED4-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|387528007|ref|NR_046511.1| Homo sapiens MED4 antisense RNA 1 (MED4-AS1), non-coding RNA"	Chr13	 48651273	 48651816	+	100873965	NR_046511.1	NA	NA	NA	"hg19_refFlat_MED4:range=chr13:48651275-486645415'pad=0,hg19_refFlat_MED4:range=chr13:48651275-486645415'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_MED4:range=chr13:48651275-486692145'pad=0,hg19_refFlat_MED4:range=chr13:48651275-486692145'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00"	NA	inter
CUST_45059_PI429285431	3.1058989	P	2.7164042	A	1.30993452251126	0	lncRNA	49549-2_{3001..4192}	"gi|110671315|ref|NR_003104.1| Homo sapiens protection of telomeres 1 homolog (S. pombe) (POT1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|110671315|ref|NR_003104.1| Homo sapiens protection of telomeres 1 homolog (S. pombe) (POT1), transcript variant 5, non-coding RNA"	Chr7	124465440	124466631	-	25913	NR_003104.1	NA	NA	NA	NA	NA	inter
CUST_38573_PI429285431	1.3157772	A	1.571271	A	0.837700360798998	0	lncRNA	39585-1_{1..2047}	n383548|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002pzf.1||-0.3256420|-0.2592546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383548|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002pzf.1||-0.3256420|-0.2592546	chr19	 52897579	 52899625	-	NA	NA	NA	NA	ZNF880	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80chr19:52887579-52889048"	NA	inter
LNCA_21_P0009661	2.377692	A	2.2642686	A	1.08179219967064	0	lncRNA	ENST00000414548	NA	NA	NA	NA	XLOC_012972	NA	ENST00000414548	THC2659801	NA	"BROAD Institute lincRNA (XLOC_012972), lincRNA [TCONS_00026826]"	chr19:12664275-12664334	hs|19p13.2	Agilent_HUMAN_G3V2	ENST00000414548	ENST00000414548	chr19	 12664275	 12664334	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37540_PI429285431	0.8875422	A	1.5119481	A	0.648686850759257	0	lncRNA	38646-1_{1..1581}	n346017|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1567|NULL|-1.3133300|-0.2799323	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346017|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1567|NULL|-1.3133300|-0.2799323	chr2	 66486021	 66487601	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7771_PI429285431	14.335967	P	13.298935	P	2.05200180502601	0	lncRNA	9397-1_{1..723}	lnc-SERPINC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:1	chr1	173837892	173838614	-	lnc-SERPINC1-1	lnc-SERPINC1-1:1	ENSG00000234741	GAS5	ZBTB37	NA	chr1:173837493-173848020	inner
CUST_41078_PI429285431	0.89721185	A	0.92126364	A	0.983466768811538	0	lncRNA	41760-1_{1..94}	ENST00000385013 ncrna:miRNA chromosome:GRCh37:4:83674490:83674583:-1 gene:ENSG00000207746 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385013 ncrna:miRNA chromosome:GRCh37:4:83674490:83674583:-1 gene:ENSG00000207746 gene_biotype:miRNA transcript_biotype:miRNA	chr4	 83674490	 83674583	-	ENSG00000207746	ENST00000385013	NA	NA	SCD5	NA	chr4:83664490-83684583	inner
LNCA_19_P00811924	0.9033984	A	2.0243282	A	0.459797395781758	0	lncRNA	ENST00000547168	XR_110351	XR_110351	NA	NA	NA	0	ENST00000547168	THC2708277	NA	"PREDICTED: Homo sapiens hypothetical LOC100506577 (LOC100506577), miscRNA [XR_110351]"	chr12:41803379-41803320	hs|12q12	Agilent_HUMAN_G3V2	ENST00000547168	ENST00000547168	chr12	 41803320	 41803379	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4105_PI429285431	6.250835	P	6.59655	P	0.786917883224868	0	lncRNA	4066-1_{1..593}	"transcript_id ""ENST00000525429.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525429.1"" | genecode_v17"	chr11	125002743	125003335	-	ENSG00000255475.1	ENST00000525429.1	RP11-687M24.4	RP11-687M24.4-001	NA	NA	NA	inter
CUST_1884_PI429285431	0.89477843	A	0.903103	A	0.994246463130405	0	lncRNA	1874-1_{1..434}	"transcript_id ""ENST00000509166.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509166.1"" | genecode_v17"	chr4	131802182	131802615	-	ENSG00000250503.1	ENST00000509166.1	RP11-401I19.1	RP11-401I19.1-001	NA	NA	NA	inter
LNCA_21_P0004908	0.9011496	A	0.9020278	A	0.999391463379593	0	lncRNA	TCONS_00011888	NA	NA	NA	NA	XLOC_005387	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005387), lincRNA [TCONS_00011888]"	chr6:92921874-92955864	hs|6q15	Agilent_HUMAN_G3V2	TCONS_00011888	TCONS_00011888	chr6	 92921874	 92955864	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21590_PI429285431	0.89125484	A	1.2221576	A	0.795038836058017	0	lncRNA	23204-1_{1..3000}	lnc-NBPF24-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-NBPF24-2:1	chr1	147482690	147485689	-	lnc-NBPF24-2	lnc-NBPF24-2:1	ENSG00000215859.4	RP6-74O6.2	NA	NA	NA	inter
LNCA_21_P0012476	10.466314	P	11.360128	P	0.538189444195494	0	lncRNA	AK091265	NA	AK091265	NA	Hs.552531	XLOC_l2_010491	NA	NA	THC2658511	NA	"BROAD Institute lincRNA (XLOC_l2_010491), lincRNA [TCONS_l2_00019669]"	chr3:193561503-193561444	hs|3q29	Agilent_HUMAN_G3V2	AK091265	AK091265	chr3	193561444	193561503	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42844_PI429285431	14.463972	P	14.48857	P	0.983094494912834	0	lncRNA	45885-1_{1..142}	ENST00000459579 ncrna:snoRNA chromosome:GRCh37:17:7480129:7480270:1 gene:ENSG00000238917 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459579 ncrna:snoRNA chromosome:GRCh37:17:7480129:7480270:1 gene:ENSG00000238917 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	  7480129	  7480270	+	ENSG00000238917	ENST00000459579	NA	NA	SENP3	NA	chr17:7470129-7475287	inter
LNCA_19_P00805367	9.343872	P	9.449618	P	0.929324276108129	0	lncRNA	TCONS_00011871	NA	NA	NA	NA	XLOC_005365	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005365), lincRNA [TCONS_00011871]"	chr6:81152392-81152451	hs|6q14.1	Agilent_HUMAN_G3V2	TCONS_00011871	TCONS_00011871	chr6	 81152392	 81152451	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35545_PI429285431	2.3794055	A	3.9606924	P	0.334183660168188	0	lncRNA	36960-1_{1..2884}	n342668|BC044655|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5170|NULL|2.8779900|-0.1683007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n342668|BC044655|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5170|NULL|2.8779900|-0.1683007	chr17	 20340136	 20343019	+	NA	NA	NA	NA	LGALS9B	NA	chr17:20346099-20360557	inter
CUST_9794_PI429285431	6.475614	P	6.6308303	P	0.89799772802515	0	lncRNA	11311-1_{1..268}	lnc-MAD2L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAD2L2-1:1	chr1	 11791787	 11792054	-	lnc-MAD2L2-1	lnc-MAD2L2-1:1	XLOC_000704	linc-MAD2L2	AGTRAP	NA	chr1:11796142-11801920	inter
CUST_37031_PI429285431	1.283616	A	1.4624757	A	0.883400956765928	0	lncRNA	38169-1_{1..1504}	n345486|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1035|NULL|-1.3147300|-0.1769690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345486|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1035|NULL|-1.3147300|-0.1769690	chr1	226300132	226301635	+	NA	NA	NA	NA	NA	"hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0,hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80"	NA	inter
CUST_18510_PI429285431	8.3064165	P	8.152117	P	1.11288112803536	0	lncRNA	20224-1_{1..445}	lnc-GPHN-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPHN-1:6	chr14	 66965071	 66965515	+	lnc-GPHN-1	lnc-GPHN-1:6	ENSG00000196553	NCRNA00238	GPHN	NA	chr14:66974125-66975271	inter
CUST_11174_PI429285431	1.1740465	M	0.9057752	A	1.20436384155785	0	lncRNA	12731-1_{1..361}	lnc-SLC35C2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC35C2-1:1	chr20	 44968341	 44968701	-	lnc-SLC35C2-1	lnc-SLC35C2-1:1	XLOC_013766	linc-CDH22	SLC35C2	NA	chr20:44978177-44978432	inter
CUST_40568_PI429285431	4.4827533	P	4.5775256	P	0.936420030582952	0	lncRNA	41323-2_{3001..6000}	n410004|NR_036431|lncRNA|Homosapiens||RefGeneNoncode|NR_036431||4.9575000|-0.3484917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410004|NR_036431|lncRNA|Homosapiens||RefGeneNoncode|NR_036431||4.9575000|-0.3484917	chrX	101140259	101143258	-	NA	NA	NA	NA	ZMAT1	NA	chrX:101137260-101155193	inter
LNCA_33_P3514859	3.299007	P	2.7556353	A	1.45737454760135	0	lncRNA	XR_108862	XR_108862	XR_108862	100506342	Hs.651324	LOC100506342	uncharacterized LOC100506342	NA	THC2616427	NA	"PREDICTED: Homo sapiens hypothetical LOC100506342 (LOC100506342), miscRNA [XR_108862]"	chr8:90729687-90729628	hs|8q21.3	Agilent_HUMAN_G3V2	XR_108862	XR_108862	chr8	 90729628	 90729687	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31126_PI429285431	3.906993	P	3.6896381	P	1.16260006955926	0	lncRNA	32921-1_{1..269}	n337434|DQ980600|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394655|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394655|-1.1360500|-0.2650919	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337434|DQ980600|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394655|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394655|-1.1360500|-0.2650919	chr1	166927296	166927564	-	NA	NA	NA	NA	MAEL	NA	chr1:166958519-166991447	inner
CUST_47383_PI429285431	3.6453252	P	2.8622952	A	1.72074104265492	0	lncRNA	51431-1_{1..1575}	"gi|336455108|ref|NR_038892.1| Homo sapiens CBR3 antisense RNA 1 (CBR3-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|336455108|ref|NR_038892.1| Homo sapiens CBR3 antisense RNA 1 (CBR3-AS1), transcript variant 1, non-coding RNA"	Chr21	 37504065	 37505639	-	100506428	NR_038892.1	NA	NA	NA	"hg19_refFlat_CBR3:range=chr21:37507491-375188105'pad=0,hg19_refFlat_CBR3:range=chr21:37507491-375188105'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_RPS9:range=chr19:54705053-547114435'pad=0,hg19_refFlat_RPS9:range=chr19:54705053-547114435'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10"	NA	inter
CUST_49200_PI429285431	0.88922495	A	0.88759446	A	1.00113080842869	0	lncRNA	53023-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00020851 range=chr4:159178384-159202705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020851 range=chr4:159178384-159202705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	159178384	159181383	+	NA	NA	NA	NA	TMEM144	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.81;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60chr4:159168384-159176439"	NA	inter
CUST_45292_PI429285431	2.0866816	A	2.5309043	A	0.73498020504339	0	lncRNA	49738-2_{3001..3250}	"gi|224028269|ref|NR_026974.1| Homo sapiens ZNF252P antisense RNA 1 (ZNF252P-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224028269|ref|NR_026974.1| Homo sapiens ZNF252P antisense RNA 1 (ZNF252P-AS1), non-coding RNA"	Chr8	146231197	146231446	+	286103	NR_026974.1	NA	NA	NA	"hg19_refFlat_ZNF167:range=chr3:44598540-446128675'pad=0,hg19_refFlat_ZNF167:range=chr3:44598540-446128675'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZFP90:range=chr16:68573696-685986015'pad=0,hg19_refFlat_ZFP90:range=chr16:68573696-685986015'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20"	NA	inter
CUST_37311_PI429285431	3.2803574	P	2.7313244	A	1.4631046871689	0	lncRNA	38418-1_{1..393}	n345755|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1304|NULL|-1.5925500|-0.3763865	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345755|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1304|NULL|-1.5925500|-0.3763865	chr2	 87389079	 87389471	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37124_PI429285431	2.2201247	A	1.4641305	A	1.68879498544972	0	lncRNA	38247-1_{1..467}	n345565|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1114|NULL|-1.4003400|-0.3251052	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345565|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1114|NULL|-1.4003400|-0.3251052	chr2	206966865	206967331	-	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.42;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30"	NA	inter
LNCA_21_P0007949	0.89459527	A	0.8904408	A	1.00288380936845	0	lncRNA	ENST00000420956	NA	NA	NA	NA	XLOC_010440	NA	ENST00000420956	NA	NA	"BROAD Institute lincRNA (XLOC_010440), lincRNA [TCONS_00021571]"	chr13:78236741-78236800	hs|13q22.3	Agilent_HUMAN_G3V2	ENST00000420956	ENST00000420956	chr13	 78236741	 78236800	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31797_PI429285431	0.9031243	A	1.0956615	A	0.875065430826438	0	lncRNA	33535-1_{1..1518}	n338337|AK022072|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|731|NULL|-1.2865300|-0.3400871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338337|AK022072|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|731|NULL|-1.2865300|-0.3400871	chr1	164797672	164799189	+	NA	NA	NA	NA	PBX1	NA	chr1:164787672-164809189	inner
CUST_43115_PI429285431	5.676889	P	6.3345437	P	0.633907964753159	0	lncRNA	47928-1_{1..126}	ENST00000516699 ncrna:snRNA chromosome:GRCh37:13:92712097:92712222:1 gene:ENSG00000252508 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516699 ncrna:snRNA chromosome:GRCh37:13:92712097:92712222:1 gene:ENSG00000252508 gene_biotype:snRNA transcript_biotype:snRNA	chr13	 92712097	 92712222	+	ENSG00000252508	ENST00000516699	NA	NA	GPC5	NA	chr13:92702097-92722222	inner
CUST_11976_PI429285431	0.8924977	A	0.89092827	A	1.00108843789864	0	lncRNA	13556-1_{1..385}	lnc-NR2F2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR2F2-7:1	chr15	 96795355	 96795739	+	lnc-NR2F2-7	lnc-NR2F2-7:1	XLOC_011369	linc-NR2F2-2	NA	NA	NA	inter
CUST_12094_PI429285431	6.0027213	P	6.3143806	P	0.805714542298118	0	lncRNA	13690-1_{1..598}	lnc-SMC2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SMC2-1:2	chr9	106790231	106790828	+	lnc-SMC2-1	lnc-SMC2-1:2	XLOC_007497	linc-SMC2-1	NA	NA	NA	inter
CUST_23818_PI429285431	2.1276426	A	2.448203	A	0.800758770689769	0	lncRNA	25381-2_{3001..4484}	lnc-H2BFM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-H2BFM-1:1	chrX	103200629	103202112	+	lnc-H2BFM-1	lnc-H2BFM-1:1	ENSG00000260831.1	GHc-362H12.3	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50"	NA	inter
CUST_26672_PI429285431	8.774082	P	6.6220813	P	4.44443707107417	0	lncRNA	28169-1_{1..1502}	lncrnadb|CDR1_AS_Human_single_exon_circular_~1.5kb_transcript	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncrnadb20130808	"lncipedia2.1,lncrnadb20130808,"	>lncrnadb|CDR1_AS_Human_single_exon_circular_~1.5kb_transcript	NA	NA	     1501	NA	NA	NA	NA	NA	NA	"hg19_refFlat_CDR1:range=chrX:139865743-1398665315'pad=0,hg19_refFlat_CDR1:range=chrX:139865743-1398665315'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00"	NA	Unknown
CUST_34271_PI429285431	5.867058	P	5.879363	P	0.991507094173669	0	lncRNA	35772-1_{1..3000}	n341129|AK097984|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3595|NULL|-1.0201800|-0.2575902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341129|AK097984|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3595|NULL|-1.0201800|-0.2575902	chr11	114177430	114180429	+	NA	NA	NA	NA	NNMT	NA	chr11:114167430-114183238	inner
CUST_49340_PI429285431	12.440567	P	12.4825325	P	0.971330723256655	0	lncRNA	53152-1_{1..613}	hg19_lincRNAsTranscripts_TCONS_l2_00023424 range=chr5:70671613-70681536 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023424 range=chr5:70671613-70681536 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 70671613	 70672225	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32009_PI429285431	6.0812817	P	6.627667	P	0.684733594027894	0	lncRNA	33730-1_{1..619}	n338573|BC010386|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|979|NULL|-0.0535930|-0.1848760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338573|BC010386|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|979|NULL|-0.0535930|-0.1848760	chr19	 37341831	 37342449	+	NA	NA	NA	NA	ZNF568	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_HECTD4:range=chr12:112600191-1127572915'pad=0,hg19_refFlat_HECTD4:range=chr12:112600191-1127572915'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40chr19:37392621-37413930"	NA	inner
CUST_51453_PI429285431	3.5199032	P	3.8635242	P	0.788060884644936	0	lncRNA	55030-1_{1..366}	hg19_lincRNAsTranscripts_TCONS_l2_00009682 range=chr16:32769028-32769666 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009682 range=chr16:32769028-32769666 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 32769028	 32769393	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1958_PI429285431	0.9053649	A	1.0784665	A	0.88693384174244	0	lncRNA	1951-1_{1..565}	"transcript_id ""ENST00000502846.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502846.1"" | genecode_v17"	chr4	160319685	160320249	+	ENSG00000250180.1	ENST00000502846.1	RP11-138A23.2	RP11-138A23.2-001	NA	NA	NA	inter
LNCA_21_P0006279	8.850948	P	8.337965	P	1.42699769058857	0	lncRNA	TCONS_00016358	NA	NA	NA	NA	XLOC_007738	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007738), lincRNA [TCONS_00016358]"	chr9:76738589-76738530	hs|9q21.13	Agilent_HUMAN_G3V2	TCONS_00016358	TCONS_00016358	chr9	 76738530	 76738589	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6596_PI429285431	5.52266	P	4.628409	P	1.85864468726927	0	lncRNA	6544-1_{1..678}	"transcript_id ""ENST00000586091.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586091.1"" | genecode_v17"	chr19	 56989524	 56990201	+	ENSG00000166770.6	ENST00000586091.1	AC004696.2	AC004696.2-004	ZNF667	NA	chr19:56979524-56988770	inter
CUST_33475_PI429285431	2.5819542	A	2.0350456	A	1.46095181898014	0	lncRNA	35048-1_{1..1897}	n340210|AK093732|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2671|NULL|-1.1545400|-0.3782680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340210|AK093732|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2671|NULL|-1.1545400|-0.3782680	chr4	121954486	121956382	-	NA	NA	NA	NA	NDNF	NA	chr4:121956782-121966383	inter
CUST_31122_PI429285431	0.920983	A	1.1854949	A	0.832480336097709	0	lncRNA	32917-1_{1..356}	n337428|DQ854815|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393895|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393895|0.7737880|-0.0055192	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337428|DQ854815|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393895|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393895|0.7737880|-0.0055192	chr19	   589925	   590280	+	NA	NA	NA	NA	HCN2	NA	chr19:589893-600281	inner
CUST_7535_PI429285431	0.91844577	A	1.3506911	A	0.741107469010274	0	lncRNA	9172-1_{1..535}	lnc-GPR39-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GPR39-4:2	chr2	134042267	134042801	+	lnc-GPR39-4	lnc-GPR39-4:2	ENSG00000226953	AC010890.1	NCKAP5	NA	chr2:134032267-134052334	inner
CUST_20624_PI429285431	0.9037031	A	1.7023194	A	0.574900304500854	0	lncRNA	22263-1_{1..2582}	lnc-UQCRFS1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-UQCRFS1-1:2	chr19	 30016331	 30018912	-	lnc-UQCRFS1-1	lnc-UQCRFS1-1:2	ENSG00000264515.1	CTC-525D6.1	VSTM2B	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40chr19:30017491-30026659"	NA	inter
LNCA_21_P0008903	4.652848	P	5.1311984	P	0.717797896266881	0	lncRNA	TCONS_00024804	NA	NA	NA	NA	XLOC_011636	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011636), lincRNA [TCONS_00024804]"	chr16:8346609-8346668	hs|16p13.2	Agilent_HUMAN_G3V2	TCONS_00024804	TCONS_00024804	chr16	  8346609	  8346668	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8347_PI429285431	2.6923342	A	3.3396623	P	0.638461663119096	0	lncRNA	9927-1_{1..3000}	lnc-ATXN7-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ATXN7-8:1	chr3	 64785141	 64788140	+	lnc-ATXN7-8	lnc-ATXN7-8:1	ENSG00000241684	ADAMTS9-AS2	NA	"hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40"	NA	inter
LNCA_21_P0008753	6.8580933	P	7.268046	P	0.752648049515838	0	lncRNA	TCONS_00023722	NA	NA	NA	NA	XLOC_011518	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011518), lincRNA [TCONS_00023722]"	chr15:69754399-69753039	hs|15q23	Agilent_HUMAN_G3V2	TCONS_00023722	TCONS_00023722	chr15	 69753039	 69754399	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48950_PI429285431	2.342299	A	2.64327	A	0.811705897131258	0	lncRNA	52792-1_{1..740}	hg19_lincRNAsTranscripts_TCONS_l2_00019629 range=chr3:180244943-180302450 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019629 range=chr3:180244943-180302450 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	180244943	180245682	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19376_PI429285431	2.2261288	A	3.524788	P	0.406503815835864	0	lncRNA	21038-1_{1..285}	lnc-RELT-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RELT-1:2	chr11	 73121531	 73121815	+	lnc-RELT-1	lnc-RELT-1:2	ENSG00000256448.1	RP11-809N8.4	FAM168A	NA	chr11:73117028-73131727	inner
CUST_33960_PI429285431	2.855153	A	3.0475402	A	0.875156417926843	0	lncRNA	35499-1_{1..1116}	n340765|CR616222|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3228|NULL|-1.3564500|-0.1265994	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340765|CR616222|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3228|NULL|-1.3564500|-0.1265994	chr17	 56084049	 56085164	+	NA	NA	NA	NA	SRSF1	"hg19_refFlat_SRSF1:range=chr17:56082767-560844985'pad=0,hg19_refFlat_SRSF1:range=chr17:56082767-560844985'pad=0 3'pad=0 strand=- repeatMasking=none,-95.30;hg19_refFlat_SRSF1:range=chr17:56083108-560844985'pad=0,hg19_refFlat_SRSF1:range=chr17:56083108-560844985'pad=0 3'pad=0 strand=- repeatMasking=none,-95.30chr17:56078280-56084707"	NA	inner
CUST_51953_PI429285431	4.3820825	P	4.9718404	P	0.664454400405571	0	lncRNA	55496-1_{1..938}	hg19_lincRNAsTranscripts_TCONS_l2_00016219 range=chr20:25965779-25991974 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016219 range=chr20:25965779-25991974 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 25965779	 25966716	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34259_PI429285431	1.7072258	A	1.401351	A	1.23616797910301	0	lncRNA	35760-1_{1..1162}	n341117|BC021736|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3583|NULL|-1.1989200|-0.3247344	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341117|BC021736|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3583|NULL|-1.1989200|-0.3247344	chr11	111381326	111382487	+	NA	NA	NA	NA	BTG4	NA	chr11:111371326-111383064	inner
CUST_47556_PI429285431	8.328463	P	8.592317	P	0.832860051626994	0	lncRNA	51564-1_{1..590}	"gi|310124183|ref|XR_110926.1| PREDICTED: Homo sapiens uncharacterized LOC100506502 (LOC100506502), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124183|ref|XR_110926.1| PREDICTED: Homo sapiens uncharacterized LOC100506502 (LOC100506502), misc_RNA"	NA	NA	NA	NA	NA	XR_110926.1	NA	NA	NA	NA	NA	Unknown
CUST_19699_PI429285431	1.8153323	A	2.1309915	A	0.803483776941761	0	lncRNA	21357-1_{1..262}	lnc-AC136428.1.1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC136428.1.1-7:1	chr16	 33206606	 33206867	-	lnc-AC136428.1.1-7	lnc-AC136428.1.1-7:1	ENSG00000260419.1	RP11-1437A8.3	LOC653550	NA	chr16:33196606-33207559	inner
CUST_29265_PI429285431	5.126046	P	5.069771	P	1.03977761399013	0	lncRNA	31016-1_{1..344}	n332368|EU392482|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000557692|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000557692|-1.4469800|-0.2989560	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332368|EU392482|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000557692|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000557692|-1.4469800|-0.2989560	chr19	   891080	   891423	-	NA	NA	NA	NA	C19orf22	NA	chr19:896503-902622	inner
CUST_41284_PI429285431	8.935173	P	8.909407	P	1.01802006714203	0	lncRNA	42271-1_{1..94}	ENST00000401286 ncrna:miRNA chromosome:GRCh37:4:1988111:1988204:-1 gene:ENSG00000216105 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401286 ncrna:miRNA chromosome:GRCh37:4:1988111:1988204:-1 gene:ENSG00000216105 gene_biotype:miRNA transcript_biotype:miRNA	chr4	  1988111	  1988204	-	ENSG00000216105	ENST00000401286	NA	NA	WHSC1	NA	chr4:1978111-1983934	inner
CUST_33390_PI429285431	0.8944918	A	1.25505	A	0.778863167701257	0	lncRNA	34968-1_{1..2206}	n340109|BC043227|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2568|NULL|0.4016150|-0.2891367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340109|BC043227|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2568|NULL|0.4016150|-0.2891367	chr10	 96986468	 96988673	-	NA	NA	NA	NA	PDLIM1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10chr10:96997329-97000901"	NA	inner
CUST_30738_PI429285431	5.28537	P	5.339349	P	0.963275915449782	0	lncRNA	32521-1_{1..239}	n336303|Y18488|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326090_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326090_04|0.2773500|-0.4556481	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336303|Y18488|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326090_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326090_04|0.2773500|-0.4556481	chr6	 31554977	 31555215	+	NA	NA	NA	NA	LST1	NA	chr6:31553956-31556686	inner
CUST_47315_PI429285431	4.646806	P	5.011566	P	0.776598055476431	0	lncRNA	51376-1_{1..444}	"gi|397139735|ref|XR_158946.1| PREDICTED: Homo sapiens uncharacterized LOC100130156 (LOC100130156), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139735|ref|XR_158946.1| PREDICTED: Homo sapiens uncharacterized LOC100130156 (LOC100130156), misc_RNA"	NA	NA	NA	NA	NA	XR_158946.1	NA	NA	NA	NA	NA	Unknown
CUST_9837_PI429285431	1.8210559	A	2.122996	A	0.811160833883199	0	lncRNA	11357-1_{1..835}	lnc-EGFL7-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EGFL7-1:3	chr9	139548146	139548980	+	lnc-EGFL7-1	lnc-EGFL7-1:3	XLOC_007615	linc-EGFL7-1	EGFL7	NA	chr9:139557377-139558533	inter
CUST_25390_PI429285431	0.8965388	A	0.9051861	A	0.994024075678404	0	lncRNA	26921-1_{1..796}	lnc-NDUFAF2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFAF2-2:1	chr5	 60527740	 60528535	+	lnc-NDUFAF2-2	lnc-NDUFAF2-2:1	ENSG00000251279.1	CTC-436P18.1	NA	NA	NA	inter
LNCA_21_P0005321	1.408696	A	1.9630303	A	0.680971205000461	0	lncRNA	ENST00000451953	NA	NA	NA	NA	XLOC_006548	NA	ENST00000451953	THC2633797	NA	"BROAD Institute lincRNA (XLOC_006548), lincRNA [TCONS_00013215]"	chr7:101206191-101206132	hs|7q22.1	Agilent_HUMAN_G3V2	ENST00000451953	ENST00000451953	chr7	101206132	101206191	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_852_PI429285431	2.418191	A	2.8976338	A	0.717254589741114	0	lncRNA	846-1_{1..428}	"transcript_id ""ENST00000413227.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413227.1"" | genecode_v17"	chr2	 38685788	 38686215	-	ENSG00000231367.1	ENST00000413227.1	AC016995.3	AC016995.3-002	NA	NA	NA	inter
CUST_1383_PI429285431	8.999786	P	9.0918255	P	0.93819550899993	0	lncRNA	1371-1_{1..866}	"transcript_id ""ENST00000478745.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000478745.1"" | genecode_v17"	chr3	 72553957	 72554822	-	ENSG00000244345.1	ENST00000478745.1	RP11-654C22.2	RP11-654C22.2-001	NA	NA	NA	inter
CUST_16715_PI429285431	1.3089545	A	2.010887	A	0.614748195445483	0	lncRNA	18421-1_{1..486}	lnc-TMCO5A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMCO5A-1:3	chr15	 38316882	 38317367	+	lnc-TMCO5A-1	lnc-TMCO5A-1:3	XLOC_011213	linc-SPRED1	NA	NA	NA	inter
CUST_19435_PI429285431	3.3519564	P	2.708663	A	1.56189059364377	0	lncRNA	21095-1_{1..1115}	lnc-SRGAP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRGAP3-1:1	chr3	  9440206	  9441320	-	lnc-SRGAP3-1	lnc-SRGAP3-1:1	ENSG00000206573.4	RP11-58B17.1	LOC100652926	NA	chr3:9435634-9438752	inner
CUST_29413_PI429285431	7.7164316	P	8.469732	P	0.593244859684002	0	lncRNA	31167-1_{1..242}	n332779|AF043338|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063735|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063735|0.7185400|-0.2245622	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332779|AF043338|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063735|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063735|0.7185400|-0.2245622	chr17	 32598158	 32598399	+	NA	NA	NA	NA	CCL7	NA	chr17:32597240-32599256	inner
CUST_40816_PI429285431	1.6296588	A	1.4861888	A	1.10455863075423	0	lncRNA	41520-1_{1..3000}	n410584|NR_037846_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037846_7||-1.0119300|-0.2642549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410584|NR_037846_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037846_7||-1.0119300|-0.2642549	chr6	  3217333	  3220332	+	NA	NA	NA	NA	TUBB2B	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90chr6:3224495-3227968"	NA	inner
CUST_23745_PI429285431	0.9625501	A	0.9107069	A	1.03658843278792	0	lncRNA	25308-1_{1..469}	lnc-HMHB1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-HMHB1-3:1	chr5	143764821	143765289	+	lnc-HMHB1-3	lnc-HMHB1-3:1	ENSG00000249605.1	CTC-218H9.1	KCTD16	NA	chr5:143754821-143774873	inner
CUST_41012_PI429285431	7.105677	P	6.761224	P	1.26966949416296	0	lncRNA	41672-2_{3001..3251}	n411617|NR_040086|lncRNA|Homosapiens||RefGeneNoncode|NR_040086||7.2358100|-0.1711896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411617|NR_040086|lncRNA|Homosapiens||RefGeneNoncode|NR_040086||7.2358100|-0.1711896	chr21	 37409840	 37410090	-	NA	NA	NA	NA	SETD4	NA	chr21:37396840-37432819	inter
CUST_41292_PI429285431	0.90620327	A	0.91195464	A	0.996021389825369	0	lncRNA	42282-1_{1..72}	ENST00000583905 ncrna:miRNA chromosome:GRCh37:20:32636925:32636996:1 gene:ENSG00000264616 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583905 ncrna:miRNA chromosome:GRCh37:20:32636925:32636996:1 gene:ENSG00000264616 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 32636925	 32636996	+	ENSG00000264616	ENST00000583905	NA	NA	RALY	NA	chr20:32626925-32646996	inter
CUST_17856_PI429285431	2.464832	A	2.2440352	A	1.16537704612286	0	lncRNA	19591-1_{1..800}	lnc-TMEM189-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM189-1:2	chr20	 48782567	 48783366	-	lnc-TMEM189-1	lnc-TMEM189-1:2	XLOC_013788	linc-TMEM189-5	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70"	NA	inter
CUST_9803_PI429285431	0.8981756	A	0.90325886	A	0.99648275271952	0	lncRNA	11319-2_{3001..6000}	lnc-TCF4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF4-1:2	chr18	 53450380	 53453379	-	lnc-TCF4-1	lnc-TCF4-1:2	XLOC_012849	linc-TCF4-1	NA	NA	NA	inter
CUST_20137_PI429285431	4.899822	P	5.059422	P	0.89527325897433	0	lncRNA	21783-2_{3001..6000}	lnc-XPC-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XPC-5:2	chr3	 14584776	 14587775	-	lnc-XPC-5	lnc-XPC-5:2	ENSG00000144596.7	GRIP2	GRIP2	NA	chr3:14571776-14583588	inner
CUST_50852_PI429285431	3.3724546	P	4.240573	P	0.547860919185828	0	lncRNA	54496-1_{1..922}	hg19_lincRNAsTranscripts_TCONS_l2_00004708 range=chr11:88132887-88161297 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004708 range=chr11:88132887-88161297 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 88132887	 88133808	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005354	8.51005	P	8.615098	P	0.929774007527413	0	lncRNA	TCONS_00013328	NA	NA	NA	NA	XLOC_005976	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005976), lincRNA [TCONS_00013328]"	chr7:5834164-5834223	hs|7p22.1	Agilent_HUMAN_G3V2	TCONS_00013328	TCONS_00013328	chr7	  5834164	  5834223	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6278_PI429285431	6.9006877	P	7.0463724	P	0.903950262867245	0	lncRNA	6202-1_{1..2727}	"transcript_id ""ENST00000577382.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577382.1"" | genecode_v17"	chr18	 75897223	 75899949	+	ENSG00000266213.1	ENST00000577382.1	RP11-100K18.1	RP11-100K18.1-001	NA	NA	NA	inter
LNCA_21_P0002234	3.4816737	P	3.27978	P	1.15020714118874	0	lncRNA	TCONS_00003724	NA	NA	NA	NA	XLOC_001511	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001511), lincRNA [TCONS_00003724]"	chr2:67283420-67283479	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00003724	TCONS_00003724	chr2	 67283420	 67283479	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39004_PI429285431	2.8412359	A	2.2133756	A	1.54527145930351	0	lncRNA	39984-2_{3001..3583}	n385304|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wfx.2||3.5549900|-0.1968885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385304|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wfx.2||3.5549900|-0.1968885	chr7	149247244	149247826	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14650_PI429285431	6.818344	P	6.084971	P	1.66252150241683	0	lncRNA	16319-2_{3001..4533}	lnc-USP25-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP25-1:1	chr21	 17269619	 17271151	+	lnc-USP25-1	lnc-USP25-1:1	XLOC_013866	linc-CXADR-5	NA	NA	NA	inter
CUST_4244_PI429285431	3.052261	A	3.5053682	P	0.730467909562267	0	lncRNA	4201-1_{1..314}	"transcript_id ""ENST00000552133.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552133.1"" | genecode_v17"	chr12	 48113384	 48113697	+	ENSG00000257433.1	ENST00000552133.1	RP1-197B17.3	RP1-197B17.3-003	ENDOU	NA	chr12:48103517-48119355	inner
LNCA_21_P0004857	0.9059592	A	0.9085378	A	0.998214247037779	0	lncRNA	THC2768400	NA	NA	NA	NA	XLOC_005209	NA	NA	THC2768400	NA	"BROAD Institute lincRNA (XLOC_005209), lincRNA [TCONS_00012439]"	chr6:026340241-026340300	hs|6p22.2	Agilent_HUMAN_G3V2	THC2768400	THC2768400	chr6	 26340241	 26340300	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_358_PI429285431	1.8453615	A	2.7084284	A	0.549782579797765	0	lncRNA	350-1_{1..547}	"transcript_id ""ENST00000427290.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427290.1"" | genecode_v17"	chr1	112719856	112720402	-	ENSG00000231246.1	ENST00000427290.1	RP5-965F6.2	RP5-965F6.2-001	NA	NA	NA	inter
LNCA_21_P0004436	0.90125513	A	1.4103692	A	0.702653790969629	0	lncRNA	TCONS_00010459	NA	NA	NA	NA	XLOC_004978	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004978), lincRNA [TCONS_00010459]"	chr5:123467699-123467640	hs|5q23.2	Agilent_HUMAN_G3V2	TCONS_00010459	TCONS_00010459	chr5	123467640	123467699	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49986_PI429285431	0.91737074	A	0.9278689	A	0.992749641583272	0	lncRNA	53725-1_{1..1564}	hg19_lincRNAsTranscripts_TCONS_l2_00026976 range=chr7:150245546-150260952 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026976 range=chr7:150245546-150260952 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	150245546	150247109	-	NA	NA	NA	NA	GIMAP4	NA	chr7:150264458-150270952	inter
CUST_28530_PI429285431	1.1138434	A	0.9885793	A	1.09070737946974	0	lncRNA	30201-1_{1..494}	n325878|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050588|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050588|-0.7446030|-0.2402386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325878|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050588|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050588|-0.7446030|-0.2402386	chr10	119991144	119991637	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23356_PI429285431	0.9344967	A	0.8918677	A	1.02998905004431	0	lncRNA	24926-1_{1..389}	lnc-ZNF645-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ZNF645-1:1	chrX	 22512733	 22513121	+	lnc-ZNF645-1	lnc-ZNF645-1:1	ENSG00000231846.1	RP11-494I9.2	NA	NA	NA	inter
CUST_50284_PI429285431	1.0122172	A	1.1300843	A	0.921549074707799	0	lncRNA	54007-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00028843 range=chr9:76064311-76092053 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028843 range=chr9:76064311-76092053 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 76064311	 76067310	+	NA	NA	NA	NA	NA	"hg19_refFlat_DPP3:range=chr11:66249672-662767225'pad=0,hg19_refFlat_DPP3:range=chr11:66249672-662767225'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60"	NA	inter
CUST_44952_PI429285431	8.108441	P	8.195933	P	0.941157448375652	0	lncRNA	49463-1_{1..501}	"gi|341915399|ref|XR_132537.1| PREDICTED: Homo sapiens uncharacterized LOC100287894 (LOC100287894), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915399|ref|XR_132537.1| PREDICTED: Homo sapiens uncharacterized LOC100287894 (LOC100287894), misc_RNA"	NA	NA	NA	NA	NA	XR_132537.1	NA	NA	NA	NA	NA	Unknown
CUST_22279_PI429285431	6.028494	P	6.0316186	P	0.997836535988793	0	lncRNA	23879-1_{1..255}	lnc-RPRML-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPRML-3:1	chr17	 45177621	 45177875	-	lnc-RPRML-3	lnc-RPRML-3:1	ENSG00000262879.1	RP11-156P1.3	NA	NA	NA	inter
CUST_9375_PI429285431	0.8866526	A	0.8881928	A	0.998932984378934	0	lncRNA	10877-1_{1..543}	lnc-STOML3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STOML3-2:1	chr13	 39141669	 39142211	-	lnc-STOML3-2	lnc-STOML3-2:1	XLOC_010573	linc-TRPC4-1	NA	NA	NA	inter
CUST_49614_PI429285431	1.3543503	A	0.89312655	A	1.37670910116391	0	lncRNA	53402-2_{3001..3066}	hg19_lincRNAsTranscripts_TCONS_l2_00025904 range=chr7:57639696-57672355 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025904 range=chr7:57639696-57672355 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 57642696	 57642761	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40"	NA	inter
CUST_66_PI429285431	0.88681173	A	0.8880656	A	0.999131261117025	0	lncRNA	65-1_{1..3000}	"transcript_id ""ENST00000488188.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000488188.2"" | genecode_v17"	chr17	 37913974	 37916973	-	ENSG00000264198.1	ENST00000488188.2	RP11-94L15.2	RP11-94L15.2-001	IKZF3	"hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_IKZF3:range=chr17:37922043-380203795'pad=0,hg19_refFlat_IKZF3:range=chr17:37922043-380203795'pad=0 3'pad=0 strand=- repeatMasking=none,-99.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60chr17:37921198-37930089"	NA	inter
CUST_35340_PI429285431	7.063459	P	6.2178187	P	1.7970621447694	0	lncRNA	36749-1_{1..2014}	n342381|AK026586|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4873|NULL|3.8980000|-0.3449629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342381|AK026586|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4873|NULL|3.8980000|-0.3449629	chr2	   218148	   220161	-	NA	NA	NA	NA	SH3YL1	NA	chr2:218136-264068	inner
LNCA_21_P0013275	0.8953951	A	1.4894974	A	0.662456532755611	0	lncRNA	TCONS_l2_00026251	NA	NA	NA	NA	XLOC_l2_013636	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013636), lincRNA [TCONS_l2_00026251]"	chr7:142928606-142928665	hs|7q34	Agilent_HUMAN_G3V2	TCONS_l2_00026251	TCONS_l2_00026251	chr7	142928606	142928665	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_958_PI429285431	0.8998507	A	0.90981764	A	0.993115252855026	0	lncRNA	947-2_{3001..3563}	"transcript_id ""ENST00000492960.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000492960.2"" | genecode_v17"	chr2	 98084083	 98084645	-	ENSG00000230606.5	ENST00000492960.2	AC159540.1	AC159540.1-001	NA	NA	NA	inter
CUST_29219_PI429285431	0.92005515	A	1.2295543	A	0.806921843820591	0	lncRNA	30968-1_{1..402}	n326742|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007014|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007014|-1.2920800|-0.3006974	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326742|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007014|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007014|-1.2920800|-0.3006974	chr1	   735351	   735752	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014066	4.84921	P	5.490015	P	0.641354983435568	0	lncRNA	XR_108328	XR_108328	XR_108328	NA	Hs.688313	LOC100506636	uncharacterized LOC100506636	NA	THC2545447	NA	"PREDICTED: Homo sapiens hypothetical LOC100506636 (LOC100506636), miscRNA [XR_108328]"	chr1:201963704-201963763	hs|1q32.1	Agilent_HUMAN_G3V2	XR_108328	XR_108328	chr1	201963704	201963763	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014585	7.5998015	P	8.224542	P	0.648536420178917	0	lncRNA	XR_110390	XR_110390	XR_110390	NA	NA	LOC100507297	uncharacterized LOC100507297	NA	THC2530781	NA	"PREDICTED: Homo sapiens hypothetical LOC100507297, transcript variant 1 (LOC100507297), miscRNA [XR_110390]"	chr3:194311164-194311223	hs|3q29	Agilent_HUMAN_G3V2	XR_110390	XR_110390	chr3	194311164	194311223	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31614_PI429285431	3.7008874	P	3.6021616	P	1.07082728139161	0	lncRNA	33370-1_{1..421}	n338130|AL110290|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|518|NULL|-1.0703600|-0.2903944	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338130|AL110290|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|518|NULL|-1.0703600|-0.2903944	chr15	 90788644	 90789064	+	NA	NA	NA	NA	C15orf58	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-94.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60chr15:90778644-90785312"	NA	inter
CUST_20382_PI429285431	1.1720868	A	1.6356918	A	0.725171936360318	0	lncRNA	22024-1_{1..539}	lnc-UNG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UNG-1:1	chr12	109550900	109551438	+	lnc-UNG-1	lnc-UNG-1:1	ENSG00000256139.1	RP11-443D10.3	UNG	NA	chr12:109540900-109548798	inter
CUST_24155_PI429285431	3.247772	P	3.4768567	P	0.853176007048409	0	lncRNA	25707-1_{1..3000}	lnc-TRIM56-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-TRIM56-1:1	chr7	100737328	100740327	+	lnc-TRIM56-1	lnc-TRIM56-1:1	ENSG00000260336.1	RP11-395B7.7	TRIM56	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60chr7:100728786-100733909"	NA	inter
CUST_29930_PI429285431	6.8626575	P	7.0462074	P	0.880533684496545	0	lncRNA	31694-1_{1..387}	n334096|M55405|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195782|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195782|-0.9085650|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334096|M55405|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195782|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195782|-0.9085650|-1.0000000	chr7	100550975	100551361	+	NA	NA	NA	NA	MUC3A	NA	chr7:100547257-100561077	inter
CUST_13903_PI429285431	2.7966423	A	3.1857166	P	0.763619420929451	0	lncRNA	15550-1_{1..671}	lnc-CILP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CILP-1:1	chr15	 65540455	 65541125	-	lnc-CILP-1	lnc-CILP-1:1	XLOC_011507	linc-CILP	PARP16	NA	chr15:65550437-65550781	inter
CUST_45137_PI429285431	0.89967096	A	0.90979505	A	0.993007080609489	0	lncRNA	49617-1_{1..786}	"gi|397139272|ref|XR_132817.2| PREDICTED: Homo sapiens uncharacterized LOC100132046 (LOC100132046), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139272|ref|XR_132817.2| PREDICTED: Homo sapiens uncharacterized LOC100132046 (LOC100132046), misc_RNA"	NA	NA	NA	NA	NA	XR_132817.2	NA	NA	NA	NA	NA	Unknown
CUST_264_PI429285431	0.90279883	A	0.8977262	A	1.00352226784008	0	lncRNA	256-1_{1..823}	"transcript_id ""ENST00000455038.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455038.1"" | genecode_v17"	chr1	 63604921	 63605743	+	ENSG00000203605.3	ENST00000455038.1	RP11-335E6.2	RP11-335E6.2-001	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40"	NA	inter
CUST_8541_PI429285431	2.6385074	A	1.9792124	A	1.57931067533559	0	lncRNA	10100-1_{1..2626}	lnc-RBM19-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RBM19-1:5	chr12	114211420	114214045	-	lnc-RBM19-1	lnc-RBM19-1:5	ENSG00000249550	ENST00000510694	NA	"hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00"	NA	inter
CUST_31352_PI429285431	0.8892621	A	0.886938	A	1.00161224162865	0	lncRNA	33134-1_{1..451}	n337820|AF085988|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|203|NULL|-0.8963720|-0.3332440	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337820|AF085988|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|203|NULL|-0.8963720|-0.3332440	chr15	 61200777	 61201227	-	NA	NA	NA	NA	RORA	NA	chr15:61190777-61211195	inner
CUST_2064_PI429285431	2.7007258	A	2.9421968	P	0.845882394327092	0	lncRNA	2055-1_{1..2419}	"transcript_id ""ENST00000507444.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000507444.1"" | genecode_v17"	chr5	  6310554	  6312972	-	ENSG00000250490.1	ENST00000507444.1	CTD-2324F15.2	CTD-2324F15.2-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80"	NA	inter
CUST_51488_PI429285431	0.88718015	A	0.8960717	A	0.993855800455705	0	lncRNA	55064-1_{1..1059}	hg19_lincRNAsTranscripts_TCONS_l2_00010193 range=chr16:56134757-56137717 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010193 range=chr16:56134757-56137717 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 56134757	 56135815	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36250_PI429285431	5.588891	P	5.2980304	P	1.22336982765744	0	lncRNA	37493-1_{1..3000}	n344786|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_335|NULL|-1.3275900|-0.1961214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344786|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_335|NULL|-1.3275900|-0.1961214	NA	NA	     2999	NA	NA	NA	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-59.80"	NA	Unknown
CUST_47169_PI429285431	7.485375	P	7.806431	P	0.800483738282659	0	lncRNA	51246-1_{1..953}	"gi|335057516|ref|NR_038359.1| Homo sapiens uncharacterized LOC284365 (MGC45922), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|335057516|ref|NR_038359.1| Homo sapiens uncharacterized LOC284365 (MGC45922), non-coding RNA"	Chr19	 51320937	 51321889	+	284365	NR_038359.1	NA	NA	NA	NA	NA	inter
CUST_47783_PI429285431	0.9018452	A	0.908293	A	0.995540697954062	0	lncRNA	51707-2_{3001..6000}	"gi|385137065|ref|NR_047603.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 33, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137065|ref|NR_047603.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 33, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047603.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0005084	0.8961659	A	1.5523278	A	0.634564227881037	0	lncRNA	TCONS_00012357	NA	NA	NA	NA	XLOC_005916	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005916), lincRNA [TCONS_00012357]"	chr6:166186631-166186572	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012357	TCONS_00012357	chr6	166186572	166186631	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7288_PI429285431	2.8856618	A	3.3968127	P	0.701662468157152	0	lncRNA	8231-1_{1..317}	"transcript_id ""ENST00000363177.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000363177.1"" | genecode_v17"	chr11	100710361	100710677	+	ENSG00000200047.1	ENST00000363177.1	RN7SKP115	RN7SKP115-201	ARHGAP42	NA	chr11:100700361-100720677	inner
CUST_41199_PI429285431	4.2589216	P	4.5806665	P	0.800101591265679	0	lncRNA	42071-1_{1..114}	ENST00000577370 ncrna:miRNA chromosome:GRCh37:16:88535326:88535439:1 gene:ENSG00000263456 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577370 ncrna:miRNA chromosome:GRCh37:16:88535326:88535439:1 gene:ENSG00000263456 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 88535326	 88535439	+	ENSG00000263456	ENST00000577370	NA	NA	ZFPM1	NA	chr16:88525326-88545439	inner
CUST_48947_PI429285431	1.5420785	A	1.2711288	A	1.20660185044805	0	lncRNA	52789-1_{1..1565}	hg19_lincRNAsTranscripts_TCONS_l2_00018993 range=chr3:167966420-168031892 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018993 range=chr3:167966420-168031892 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	167966420	167967984	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50246_PI429285431	2.9838824	P	0.91837496	A	4.18581177838833	0	lncRNA	53970-1_{1..2779}	hg19_lincRNAsTranscripts_TCONS_l2_00029344 range=chr9:68419872-68438696 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029344 range=chr9:68419872-68438696 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 68419872	 68422650	-	NA	NA	NA	NA	NA	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70"	NA	inter
CUST_13569_PI429285431	4.1660933	P	4.490363	P	0.798702591596232	0	lncRNA	15210-1_{1..304}	lnc-PKNOX1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PKNOX1-2:2	chr21	 44303716	 44304019	+	lnc-PKNOX1-2	lnc-PKNOX1-2:2	XLOC_013957	linc-NDUFV3-1	NDUFV3	NA	chr21:44313378-44313934	inter
CUST_28282_PI429285431	0.922078	A	1.1315023	A	0.864882289264177	0	lncRNA	29918-1_{1..2998}	n325577|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129955|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129955|0.2518530|-0.2470828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325577|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129955|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129955|0.2518530|-0.2470828	chr17	 13620675	 13623672	-	NA	NA	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10"	NA	inter
CUST_34512_PI429285431	2.8410366	A	1.9302453	A	1.88007641383644	0	lncRNA	35976-1_{1..2255}	n341389|BC025336|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3858|NULL|-1.1019000|-0.2702534	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341389|BC025336|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3858|NULL|-1.1019000|-0.2702534	chr8	  1706373	  1708627	-	NA	NA	NA	NA	CLN8	NA	chr8:1711870-1718613	inter
CUST_32797_PI429285431	2.1063082	A	2.835832	A	0.603102951219064	0	lncRNA	34432-1_{1..1465}	n339442|BC040587|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1875|NULL|-1.3426900|-0.4034016	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n339442|BC040587|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1875|NULL|-1.3426900|-0.4034016	chr3	116640277	116641741	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38763_PI429285431	7.4459095	P	6.726166	P	1.64688920436432	0	lncRNA	39755-1_{1..1969}	n384353|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fcz.1||7.6587700|-0.2575276	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384353|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fcz.1||7.6587700|-0.2575276	chr3	159818477	159820445	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47795_PI429285431	3.6779735	P	4.4090652	P	0.602447863732399	0	lncRNA	51716-1_{1..1062}	"gi|221139787|ref|NR_001555.2| Homo sapiens golgin A2 pseudogene 2, Y-linked (GOLGA2P2Y), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|221139787|ref|NR_001555.2| Homo sapiens golgin A2 pseudogene 2, Y-linked (GOLGA2P2Y), non-coding RNA"	NA	NA	NA	NA	NA	NR_001555.2	NA	NA	NA	NA	NA	Unknown
CUST_7933_PI429285431	6.2547193	P	6.0500383	P	1.15243149994306	0	lncRNA	9545-1_{1..513}	lnc-MAPK6-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAPK6-4:2	chr15	 52402812	 52403324	+	lnc-MAPK6-4	lnc-MAPK6-4:2	ENSG00000231111	AC023906.1	GNB5	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20chr15:52413123-52413225"	NA	inner
CUST_21588_PI429285431	1.0202134	A	0.9060812	A	1.08232381770452	0	lncRNA	23202-1_{1..392}	lnc-C15orf53-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C15orf53-1:1	chr15	 38981095	 38981486	+	lnc-C15orf53-1	lnc-C15orf53-1:1	ENSG00000259747.1	RP11-275I4.2	C15orf53	NA	chr15:38988799-38991392	inter
CUST_5161_PI429285431	0.9006586	A	0.89536804	A	1.0036738689203	0	lncRNA	5101-1_{1..1093}	"transcript_id ""ENST00000560750.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560750.1"" | genecode_v17"	chr15	 44819455	 44820547	-	ENSG00000179523.4	ENST00000560750.1	RP11-151N17.2	RP11-151N17.2-004	EIF3J	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10chr15:44829266-44838838"	NA	inter
CUST_38684_PI429285431	0.89957327	A	1.1452545	A	0.843417446566184	0	lncRNA	39682-2_{3001..3707}	n384064|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zlf.1||0.2411670|-0.2242832	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384064|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zlf.1||0.2411670|-0.2242832	chr22	 16254234	 16254940	-	NA	NA	NA	NA	POTEH	NA	chr22:16256332-16264941	inter
CUST_23646_PI429285431	1.126268	A	0.8882369	A	1.17938201578061	0	lncRNA	25211-1_{1..689}	lnc-TMSB4Y-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TMSB4Y-1:1	chrY	 15970397	 15971085	+	lnc-TMSB4Y-1	lnc-TMSB4Y-1:1	ENSG00000227822.2	AC006370.2	NA	NA	NA	inter
CUST_30253_PI429285431	1.6761463	A	2.066485	A	0.762950466373135	0	lncRNA	32028-1_{1..621}	n335129|AY187242|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250927|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250927|2.9577100|-0.0682949	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335129|AY187242|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250927|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250927|2.9577100|-0.0682949	chr16	 50727537	 50728157	+	NA	NA	NA	NA	NOD2	NA	chr16:50731050-50743844	inner
LNCA_21_P0006097	0.90728426	A	0.90133226	A	1.00413413407149	0	lncRNA	ENST00000430534	NA	NA	NA	NA	XLOC_007818	NA	ENST00000430534	NA	NA	"BROAD Institute lincRNA (XLOC_007818), lincRNA [TCONS_00015863]"	chr9:109346485-109346426	hs|9q31.2	Agilent_HUMAN_G3V2	ENST00000430534	ENST00000430534	chr9	109346426	109346485	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25900_PI429285431	4.159012	P	4.3458567	P	0.878525032640848	0	lncRNA	27419-1_{1..880}	lnc-C2orf42-3:24	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:24	chr2	 70312948	 70313827	-	lnc-C2orf42-3	lnc-C2orf42-3:24	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_32320_PI429285431	1.6398822	A	1.7504761	A	0.926206701047302	0	lncRNA	34003-1_{1..2161}	n338899|BC043359|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1325|NULL|0.2362420|-0.1772800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n338899|BC043359|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1325|NULL|0.2362420|-0.1772800	chr19	 50341901	 50344061	-	NA	NA	NA	NA	MED25	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr19:50331901-50340237"	NA	inter
CUST_24278_PI429285431	0.8926295	A	1.6290978	A	0.600206854478648	0	lncRNA	25829-1_{1..558}	lnc-THOC7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-THOC7-1:1	chr3	 63535654	 63536211	-	lnc-THOC7-1	lnc-THOC7-1:1	ENSG00000241359.1	SYNPR-AS1	SYNPR	NA	chr3:63525654-63545727	inner
LNCA_21_P0007092	2.1145763	A	3.6017272	P	0.356716313410858	0	lncRNA	THC2655298	NA	NA	NA	NA	XLOC_008691	NA	NA	THC2655298	NA	"BROAD Institute lincRNA (XLOC_008691), lincRNA [TCONS_00018869]"	chr10:003107700-003107641	hs|10p15.2	Agilent_HUMAN_G3V2	THC2655298	THC2655298	chr10	  3107641	  3107700	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27174_PI429285431	0.91593033	A	1.0333985	A	0.921803934116851	0	lncRNA	28713-1_{1..473}	n324302|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043189|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043189|-1.0135800|-0.2349968	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324302|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043189|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043189|-1.0135800|-0.2349968	chr6	168373260	168373732	+	NA	NA	NA	NA	MLLT4	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90chr6:168363260-168372700"	NA	inner
CUST_17691_PI429285431	1.9052107	A	1.1909928	A	1.64059359364002	0	lncRNA	19420-1_{1..278}	lnc-FAM9A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM9A-1:1	chrX	  8835543	  8835820	-	lnc-FAM9A-1	lnc-FAM9A-1:1	XLOC_008110	linc-FAM9A	NA	NA	NA	inter
LNCA_21_P0007682	3.7294939	P	3.8462193	P	0.922278646079191	0	lncRNA	TCONS_00020680	NA	NA	NA	NA	XLOC_009986	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009986), lincRNA [TCONS_00020680]"	chr12:4318522-4318463	hs|12p13.32	Agilent_HUMAN_G3V2	TCONS_00020680	TCONS_00020680	chr12	  4318463	  4318522	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2514_PI429285431	0.8998436	A	0.9013791	A	0.998936238699869	0	lncRNA	2504-3_{6001..6593}	"transcript_id ""ENST00000530000.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000530000.1"" | genecode_v17"	chr6	 33884879	 33885471	+	ENSG00000233183.2	ENST00000530000.1	RP3-468B3.2	RP3-468B3.2-003	NA	NA	NA	inter
CUST_11392_PI429285431	1.2971525	A	1.0815946	A	1.16115285329244	0	lncRNA	12956-1_{1..306}	lnc-FOXF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXF2-1:1	chr6	  1490003	  1490308	+	lnc-FOXF2-1	lnc-FOXF2-1:1	XLOC_005123	linc-FOXC1-3	NA	NA	NA	inter
CUST_39066_PI429285431	1.3594844	A	0.89728564	A	1.37763983065756	0	lncRNA	40041-1_{1..2231}	n385531|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ack.2||3.1706100|-0.3266523	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385531|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ack.2||3.1706100|-0.3266523	chr9	 42669320	 42671550	+	NA	NA	NA	NA	CBWD7	NA	chr9:42659320-42714961	inter
CUST_17423_PI429285431	0.8959699	A	0.9051131	A	0.993682456822088	0	lncRNA	19147-1_{1..2140}	lnc-GRPEL1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-GRPEL1-1:4	chr4	  7104995	  7107134	-	lnc-GRPEL1-1	lnc-GRPEL1-1:4	XLOC_003872	linc-GRPEL1-1	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70"	NA	inter
LNCA_21_P0008809	1.2875941	A	0.92394733	A	1.28667417893902	0	lncRNA	TCONS_00023857	NA	NA	NA	NA	XLOC_011172	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011172), lincRNA [TCONS_00023857]"	chr15:24423065-24426091	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023857	TCONS_00023857	chr15	 24423065	 24426091	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7037_PI429285431	0.89637494	A	0.91003853	A	0.990573828637433	0	lncRNA	6982-1_{1..710}	"transcript_id ""ENST00000567273.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567273.1"" | genecode_v17"	chrX	 37765400	 37766109	+	ENSG00000259977.1	ENST00000567273.1	AL121578.2	AL121578.2-001	NA	NA	NA	inter
CUST_23396_PI429285431	2.2625196	A	2.229107	A	1.02343012125064	0	lncRNA	24964-1_{1..458}	lnc-GABARAPL3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GABARAPL3-2:1	chr15	 90941040	 90941497	-	lnc-GABARAPL3-2	lnc-GABARAPL3-2:1	ENSG00000259177.1	RP11-154B12.3	IQGAP1	NA	chr15:90931473-90951113	inner
CUST_43890_PI429285431	10.164113	P	9.757402	P	1.32566017806821	0	lncRNA	48608-2_{3001..5149}	"gi|385275068|ref|NR_047656.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385275068|ref|NR_047656.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 5, non-coding RNA"	Chr2	 97261892	 97264040	-	55683	NR_047656.1	NA	NA	NA	NA	NA	inter
CUST_12806_PI429285431	3.7768514	P	3.9200704	P	0.905496518907973	0	lncRNA	14433-1_{1..425}	lnc-GINS2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GINS2-2:1	chr16	 85616949	 85617373	-	lnc-GINS2-2	lnc-GINS2-2:1	XLOC_012037	linc-FAM92B-3	NA	NA	NA	inter
CUST_26766_PI429285431	1.6663574	A	1.4584773	A	1.15498979127242	0	lncRNA	28265-1_{1..2907}	n323817|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058027|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058027|0.3695730|-0.2811668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323817|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058027|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058027|0.3695730|-0.2811668	chrX	118309519	118312425	+	NA	NA	NA	NA	PGRMC1	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10chrX:118354745-118363601"	NA	inter
LNCA_21_P0012928	3.1054769	P	3.4109173	P	0.809195162292732	0	lncRNA	TCONS_l2_00023092	NA	NA	NA	NA	XLOC_l2_012210	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012210), lincRNA [TCONS_l2_00023092]"	chr5:126394486-126394427	hs|5q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00023092	TCONS_l2_00023092	chr5	126394427	126394486	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011337	6.7375126	P	6.9149046	P	0.88430012623079	0	lncRNA	AK129775	NA	AK129775	NA	Hs.721654	XLOC_l2_004771	NA	NA	THC2511910	NA	"BROAD Institute lincRNA (XLOC_l2_004771), lincRNA [TCONS_l2_00008795]"	chr15:84946753-84946694	hs|15q25.2	Agilent_HUMAN_G3V2	AK129775	AK129775	chr15	 84946694	 84946753	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30756_PI429285431	5.428068	P	5.60604	P	0.883944686602676	0	lncRNA	32541-1_{1..324}	n336577|Z18326|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326559|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326559|2.2175000|-0.0654115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336577|Z18326|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326559|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326559|2.2175000|-0.0654115	chr2	 89442020	 89442343	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43809_PI429285431	1.9457511	A	2.5162404	A	0.673388365378505	0	lncRNA	48535-1_{1..2127}	"gi|336285474|ref|NR_038837.1| Homo sapiens uncharacterized LOC645949 (LOC645949), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|336285474|ref|NR_038837.1| Homo sapiens uncharacterized LOC645949 (LOC645949), non-coding RNA"	Chr2	 21910306	 21912432	-	645949	NR_038837.1	NA	NA	NA	NA	NA	inter
CUST_24388_PI429285431	0.8945508	A	0.8994906	A	0.996581846789683	0	lncRNA	25941-1_{1..2008}	lnc-ARL6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-ARL6-1:1	chr3	 97478367	 97480374	+	lnc-ARL6-1	lnc-ARL6-1:1	ENSG00000261292.1	RP11-389G6.3	ARL6	NA	chr3:97483595-97490374	inter
CUST_31282_PI429285431	6.7088842	P	6.733219	P	0.983273863433488	0	lncRNA	33070-1_{1..297}	n337743|X98272|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|125|NULL|1.1335500|-0.0983038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337743|X98272|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|125|NULL|1.1335500|-0.0983038	chr1	 21599374	 21599670	-	NA	NA	NA	NA	ECE1	NA	chr1:21589374-21672034	inner
CUST_32960_PI429285431	2.9479728	A	3.10226	A	0.898576227554548	0	lncRNA	34577-1_{1..2113}	n339635|AL110176|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2079|NULL|-1.0728200|-0.4042091	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339635|AL110176|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2079|NULL|-1.0728200|-0.4042091	chr3	145777371	145779483	-	NA	NA	NA	NA	PLOD2	NA	chr3:145787227-145789466	inter
LNCA_21_P0006274	10.88872	P	10.595652	P	1.22524308116122	0	lncRNA	TCONS_00016344	NA	NA	NA	NA	XLOC_007725	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007725), lincRNA [TCONS_00016344]"	chr9:72009284-72009225	hs|9q21.11	Agilent_HUMAN_G3V2	TCONS_00016344	TCONS_00016344	chr9	 72009225	 72009284	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49667_PI429285431	1.6255078	A	1.0263455	A	1.51483672207115	0	lncRNA	53447-2_{3001..3722}	hg19_lincRNAsTranscripts_TCONS_l2_00026947 range=chr7:149244194-149321764 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026947 range=chr7:149244194-149321764 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	149247194	149247915	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25036_PI429285431	3.11742	P	3.2439857	P	0.916009394725005	0	lncRNA	26575-1_{1..411}	lnc-DAZL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-DAZL-1:1	chr3	 16738886	 16739296	-	lnc-DAZL-1	lnc-DAZL-1:1	ENSG00000229271.1	AC091493.2	NA	NA	NA	inter
LNCA_21_P0006379	2.114756	A	2.4242098	A	0.806947209181763	0	lncRNA	TCONS_00016752	NA	NA	NA	NA	XLOC_007667	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007667), lincRNA [TCONS_00016752]"	chr9:33171188-33167761	hs|9p21.1	Agilent_HUMAN_G3V2	TCONS_00016752	TCONS_00016752	chr9	 33167761	 33171188	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1143_PI429285431	0.89969254	A	0.90308857	A	0.997648819744833	0	lncRNA	1132-1_{1..511}	"transcript_id ""ENST00000432599.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432599.1"" | genecode_v17"	chr2	155316369	155316879	+	ENSG00000238004.1	ENST00000432599.1	AC009227.3	AC009227.3-001	GALNT13	NA	chr2:155306369-155310489	inter
CUST_8061_PI429285431	0.89474595	A	0.8952404	A	0.999657332100632	0	lncRNA	9668-1_{1..1606}	lnc-C3orf65-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C3orf65-1:1	chr3	185506805	185508410	+	lnc-C3orf65-1	lnc-C3orf65-1:1	ENSG00000249214	ENST00000502700	IGF2BP2	NA	chr3:185496805-185518293	inner
CUST_26863_PI429285431	2.6203172	A	2.4440613	A	1.12994762279604	0	lncRNA	28377-1_{1..390}	n323935|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054981|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054981|-1.3925600|-0.0980089	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323935|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054981|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054981|-1.3925600|-0.0980089	chr9	137384350	137384739	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33183_PI429285431	4.8619804	P	4.690086	P	1.1265367671086	0	lncRNA	34775-1_{1..1509}	n339873|AK026407|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2321|NULL|-1.0813100|-0.2210202	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339873|AK026407|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2321|NULL|-1.0813100|-0.2210202	chr4	 15779186	 15780694	-	NA	NA	NA	NA	CD38	"hg19_refFlat_CD38:range=chr4:15780038-158502255'pad=0,hg19_refFlat_CD38:range=chr4:15780038-158502255'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.30chr4:15779931-15790675"	NA	inner
LNCA_21_P0001945	2.6142044	A	3.470507	P	0.552366373425416	0	lncRNA	ENST00000424655	NA	NA	NA	NA	XLOC_001776	NA	ENST00000424655	NA	NA	"BROAD Institute lincRNA (XLOC_001776), lincRNA [TCONS_00003063]"	chr2:182206956-182207015	hs|2q31.3	Agilent_HUMAN_G3V2	ENST00000424655	ENST00000424655	chr2	182206956	182207015	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11999_PI429285431	4.0453296	P	3.6224644	P	1.34058732628919	0	lncRNA	13580-1_{1..1877}	lnc-ARFGEF2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARFGEF2-4:1	chr20	 46973677	 46975553	+	lnc-ARFGEF2-4	lnc-ARFGEF2-4:1	XLOC_013550	linc-ARFGEF2-5	NA	NA	NA	inter
CUST_32554_PI429285431	6.1189613	P	6.458763	P	0.790149911362991	0	lncRNA	34218-1_{1..603}	n339167|AF086098|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1598|NULL|-1.0141700|-0.1959819	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339167|AF086098|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1598|NULL|-1.0141700|-0.1959819	chr2	231916754	231917356	+	NA	NA	NA	NA	PSMD1	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-25.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00chr2:231921578-231927352"	NA	inter
CUST_46522_PI429285431	10.855857	P	10.754477	P	1.07279915053566	0	lncRNA	50712-2_{3001..5032}	"gi|357430767|ref|NR_045529.1| Homo sapiens FLJ00317 protein (LOC390660), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|357430767|ref|NR_045529.1| Homo sapiens FLJ00317 protein (LOC390660), non-coding RNA"	Chr15	 82588621	 82590652	+	390660	NR_045529.1	NA	NA	NA	NA	NA	inter
CUST_4265_PI429285431	2.5809891	A	3.0022142	A	0.746790199709693	0	lncRNA	4222-1_{1..429}	"transcript_id ""ENST00000566418.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566418.1"" | genecode_v17"	chr12	 54148142	 54148570	+	ENSG00000260030.1	ENST00000566418.1	RP11-686F15.2	RP11-686F15.2-001	NA	NA	NA	inter
LNCA_21_P0003837	0.903633	A	0.90566766	A	0.998590675189865	0	lncRNA	TCONS_00008801	NA	NA	NA	NA	XLOC_003555	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003555), lincRNA [TCONS_00008801]"	chr4:63001709-63001768	hs|4q13.1	Agilent_HUMAN_G3V2	TCONS_00008801	TCONS_00008801	chr4	 63001709	 63001768	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1445_PI429285431	1.3994449	A	0.911667	A	1.40228335532222	0	lncRNA	1434-1_{1..372}	"transcript_id ""ENST00000478301.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000478301.1"" | genecode_v17"	chr3	114403427	114403798	+	ENSG00000241295.1	ENST00000478301.1	ZBTB20-AS2	ZBTB20-AS2-001	ZBTB20	NA	chr3:114393427-114416456	inner
CUST_40900_PI429285431	8.327394	P	8.474003	P	0.903371309164438	0	lncRNA	41586-2_{3001..3375}	n410731|NR_038164|lncRNA|Homosapiens||RefGeneNoncode|NR_038164||4.6250500|-0.1694006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410731|NR_038164|lncRNA|Homosapiens||RefGeneNoncode|NR_038164||4.6250500|-0.1694006	chr20	  1425806	  1426180	-	NA	NA	NA	NA	NSFL1C	NA	chr20:1422807-1448337	inner
CUST_11794_PI429285431	1.0446585	A	0.99208766	A	1.03711138006959	0	lncRNA	13375-1_{1..1015}	lnc-CLIC4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLIC4-2:1	chr1	 25373221	 25374235	+	lnc-CLIC4-2	lnc-CLIC4-2:1	XLOC_000099	linc-RHD-2	NA	NA	NA	inter
CUST_28788_PI429285431	0.89332277	A	0.9005341	A	0.995013958720039	0	lncRNA	30496-1_{1..792}	n326195|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091837|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091837|-1.0711500|-0.4215798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326195|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091837|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091837|-1.0711500|-0.4215798	chr1	227425830	227426621	-	NA	NA	NA	NA	CDC42BPA	NA	chr1:227415830-227439932	inner
CUST_31592_PI429285431	0.89438546	A	0.8884805	A	1.00410139416577	0	lncRNA	33349-1_{1..1154}	n338098|BC040907|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|485|NULL|-0.7632520|-0.2904039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338098|BC040907|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|485|NULL|-0.7632520|-0.2904039	chr1	 95527151	 95528304	+	NA	NA	NA	NA	ALG14	NA	chr1:95517151-95538507	inner
CUST_1493_PI429285431	2.9192574	A	0.91869545	A	4.00155835971427	0	lncRNA	1480-1_{1..331}	"transcript_id ""ENST00000323689.9"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000323689.9"" | genecode_v17"	chr3	149695885	149696215	+	ENSG00000242791.2	ENST00000323689.9	RP11-651P23.5	RP11-651P23.5-001	PFN2	NA	chr3:149685885-149688741	inter
CUST_19005_PI429285431	6.594498	P	7.193474	P	0.660222403567287	0	lncRNA	20695-1_{1..564}	lnc-HSCB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HSCB-1:1	chr22	 28389112	 28389675	+	lnc-HSCB-1	lnc-HSCB-1:1	ENSG00000235954	TTC28-AS1	TTC28	"hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0,hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0 3'pad=0 strand=- repeatMasking=none,-96.50chr22:28379112-28399280"	NA	inner
CUST_37882_PI429285431	1.7446437	A	0.88530844	A	1.81420220139886	0	lncRNA	38973-1_{1..2892}	n346418|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1968|NULL|-1.3131600|-0.2871840	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346418|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1968|NULL|-1.3131600|-0.2871840	chr13	 50964289	 50967180	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44175_PI429285431	0.8846883	A	0.88505393	A	0.999746596708411	0	lncRNA	48833-1_{1..3000}	"gi|224493666|ref|NR_027122.1| Homo sapiens embryonic stem cell related (non-protein coding) (ESRG), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224493666|ref|NR_027122.1| Homo sapiens embryonic stem cell related (non-protein coding) (ESRG), non-coding RNA"	Chr3	 54666151	 54669150	-	790952	NR_027122.1	NA	NA	NA	NA	NA	inter
CUST_44953_PI429285431	10.486624	P	10.942563	P	0.729035513820194	0	lncRNA	49464-1_{1..1029}	"gi|410170534|ref|XR_171048.1| PREDICTED: Homo sapiens uncharacterized LOC100996365 (LOC100996365), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170534|ref|XR_171048.1| PREDICTED: Homo sapiens uncharacterized LOC100996365 (LOC100996365), misc_RNA"	NA	NA	NA	NA	NA	XR_171048.1	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00322259	4.2108197	P	4.1693907	P	1.02913268543845	0	lncRNA	XR_109498	XR_109498	XR_109498	NA	Hs.721209	LOC100506374	uncharacterized LOC100506374	NA	THC2720183	NA	"PREDICTED: Homo sapiens hypothetical LOC100506374 (LOC100506374), miscRNA [XR_109498]"	chr19:56813396-56813455	hs|19q13.43	Agilent_HUMAN_G3V2	XR_109498	XR_109498	chr19	 56813396	 56813455	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10208_PI429285431	7.7042236	P	8.066054	P	0.778176651883994	0	lncRNA	11735-1_{1..275}	lnc-RP11-327F22.5.1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-327F22.5.1-6:1	chr16	 51558830	 51559104	+	lnc-RP11-327F22.5.1-6	lnc-RP11-327F22.5.1-6:1	XLOC_011721	linc-CHD9-7	NA	NA	NA	inter
CUST_11523_PI429285431	1.4589223	A	1.9426757	A	0.715114717361031	0	lncRNA	13093-1_{1..1204}	lnc-DAAM2-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DAAM2-3:4	chr6	 40347021	 40348224	+	lnc-DAAM2-3	lnc-DAAM2-3:4	XLOC_005285	linc-TSPO2-2	NA	NA	NA	inter
CUST_44994_PI429285431	5.906974	P	6.2176213	P	0.806279921080123	0	lncRNA	49503-1_{1..901}	"gi|334358870|ref|NR_038346.1| Homo sapiens MAGI2 antisense RNA 3 (MAGI2-AS3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|334358870|ref|NR_038346.1| Homo sapiens MAGI2 antisense RNA 3 (MAGI2-AS3), transcript variant 4, non-coding RNA"	Chr7	 79082273	 79083173	+	100505881	NR_038346.1	NA	NA	NA	"hg19_refFlat_MAGI2:range=chr7:77648632-790826365'pad=0,hg19_refFlat_MAGI2:range=chr7:77648632-790826365'pad=0 3'pad=0 strand=- repeatMasking=none,-100.50"	NA	inter
CUST_7852_PI429285431	5.4518175	P	5.884492	P	0.740887038648993	0	lncRNA	9476-1_{1..558}	lnc-CA8-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CA8-3:7	chr8	 61326115	 61326672	-	lnc-CA8-3	lnc-CA8-3:7	ENSG00000251396	ENSG00000251396.2	NA	NA	NA	inter
CUST_19130_PI429285431	0.89568555	A	0.9066777	A	0.99240977457652	0	lncRNA	20810-1_{1..131}	lnc-C11orf16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf16-1:1	chr11	  8960581	  8960711	-	lnc-C11orf16-1	lnc-C11orf16-1:1	NDM29	NDM29	C11orf16	NA	chr11:8950581-8954553	inner
CUST_37289_PI429285431	0.8943557	A	0.88947785	A	1.00338679023232	0	lncRNA	38398-1_{1..812}	n345732|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1281|NULL|-1.3225400|-0.4192947	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345732|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1281|NULL|-1.3225400|-0.4192947	chr6	127201324	127202135	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40_PI429285431	2.4541066	A	2.6295216	A	0.885512759333439	0	lncRNA	39-1_{1..1359}	"transcript_id ""ENST00000526453.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000526453.1"" | genecode_v17"	chr11	118866905	118868263	-	ENSG00000255121.2	ENST00000526453.1	RP11-110I1.12	RP11-110I1.12-001	CCDC84	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20chr11:118868852-118878714"	NA	inter
CUST_24592_PI429285431	1.262413	A	1.101872	A	1.11770619107463	0	lncRNA	26141-1_{1..503}	lnc-MAB21L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAB21L1-1:1	chr13	 35623280	 35623782	-	lnc-MAB21L1-1	lnc-MAB21L1-1:1	ENSG00000225474.1	NBEA-AS1	NBEA	NA	chr13:35613280-35633401	inner
LNCA_21_P0007794	0.8933519	A	0.8898355	A	1.00244035557786	0	lncRNA	TCONS_00020988	NA	NA	NA	NA	XLOC_010253	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010253), lincRNA [TCONS_00020988]"	chr12:128151595-128151536	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020988	TCONS_00020988	chr12	128151536	128151595	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005039	0.8936645	A	0.8899239	A	1.00259615052102	0	lncRNA	TCONS_00012219	NA	NA	NA	NA	XLOC_005778	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005778), lincRNA [TCONS_00012219]"	chr6:86354508-86354449	hs|6q14.3	Agilent_HUMAN_G3V2	TCONS_00012219	TCONS_00012219	chr6	 86354449	 86354508	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4362_PI429285431	0.902913	A	0.9058669	A	0.997954607215937	0	lncRNA	4317-1_{1..3000}	"transcript_id ""ENST00000605386.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000605386.1"" | genecode_v17"	chr12	 90102736	 90105735	+	ENSG00000271614.1	ENST00000605386.1	RP11-591N1.1	RP11-591N1.1-001	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-9.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40"	NA	inter
CUST_18544_PI429285431	1.3808695	A	0.89761245	A	1.39789601766573	0	lncRNA	20256-1_{1..3000}	lnc-TCL1B-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCL1B-1:9	chr14	 96138308	 96141307	+	lnc-TCL1B-1	lnc-TCL1B-1:9	ENSG00000187621	TCL6	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50"	NA	inter
CUST_49107_PI429285431	0.8975506	A	1.1058246	A	0.865572158428939	0	lncRNA	52931-1_{1..1366}	hg19_lincRNAsTranscripts_TCONS_l2_00021579 range=chr4:39481985-39483385 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021579 range=chr4:39481985-39483385 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 39481985	 39483350	+	NA	NA	NA	NA	LIAS	NA	chr4:39471985-39479273	inter
CUST_25705_PI429285431	3.4728084	P	2.607598	A	1.82160530739189	0	lncRNA	27233-1_{1..553}	lnc-F8A2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-F8A2-1:2	chrX	154716244	154716796	+	lnc-F8A2-1	lnc-F8A2-1:2	ENSG00000225393.1	RP11-218L14.4	TMLHE	NA	chrX:154718672-154726707	inter
LNCA_21_P0013478	4.471472	P	4.7053514	P	0.850345240470579	0	lncRNA	TCONS_l2_00027749	NA	NA	NA	NA	XLOC_l2_014197	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014197), lincRNA [TCONS_l2_00027749]"	chr8:49293633-49296676	hs|8q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00027749	TCONS_l2_00027749	chr8	 49293633	 49296676	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37678_PI429285431	11.268127	P	11.31365	P	0.968938497574889	0	lncRNA	38771-1_{1..349}	n346165|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1715|NULL|-1.2391000|-0.1271296	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346165|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1715|NULL|-1.2391000|-0.1271296	chr21	 26734129	 26734477	-	NA	NA	NA	NA	NA	"hg19_refFlat_RPL13A:range=chr19:49990887-499950725'pad=0,hg19_refFlat_RPL13A:range=chr19:49990887-499950725'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40;hg19_refFlat_RPL13A:range=chr19:49993761-499950725'pad=0,hg19_refFlat_RPL13A:range=chr19:49993761-499950725'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40"	NA	inter
CUST_48308_PI429285431	2.13691	A	2.3587153	A	0.857491752273489	0	lncRNA	52166-1_{1..261}	hg19_lincRNAsTranscripts_TCONS_l2_00001058 range=chr1:16983392-16993712 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001058 range=chr1:16983392-16993712 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 16983392	 16983652	-	NA	NA	NA	NA	LOC729574	NA	chr1:16999498-17000007	inter
CUST_2639_PI429285431	1.3958874	A	0.9525891	A	1.35970935424131	0	lncRNA	2626-1_{1..464}	"transcript_id ""ENST00000579944.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579944.1"" | genecode_v17"	chr6	135993452	135993915	+	ENSG00000231028.4	ENST00000579944.1	LINC00271	LINC00271-007	NA	NA	NA	inter
LNCA_21_P0014697	1.4421282	A	0.89572024	A	1.46044493151847	0	lncRNA	XR_111795	XR_111795	XR_111795	NA	Hs.586967	LOC100509315	uncharacterized LOC100509315	NA	THC2647149	NA	"PREDICTED: Homo sapiens hypothetical LOC100509315 (LOC100509315), miscRNA [XR_111795]"	chr18:68047458-68047399	hs|18q22.2	Agilent_HUMAN_G3V2	XR_111795	XR_111795	chr18	 68047399	 68047458	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008488	2.820264	A	3.1826973	P	0.777851521019466	0	lncRNA	TCONS_00022877	NA	NA	NA	NA	XLOC_011132	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011132), lincRNA [TCONS_00022877]"	chr14:101587422-101587100	hs|14q32.31	Agilent_HUMAN_G3V2	TCONS_00022877	TCONS_00022877	chr14	101587100	101587422	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28087_PI429285431	0.89849496	A	0.9087119	A	0.992943174005581	0	lncRNA	29708-1_{1..486}	n325358|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324851|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324851|-1.1724500|-0.2050253	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325358|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324851|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324851|-1.1724500|-0.2050253	chr2	 28785694	 28786179	-	NA	NA	NA	NA	PLB1	NA	chr2:28775694-28822562	inner
CUST_11572_PI429285431	12.803263	P	12.643943	P	1.11676063994965	0	lncRNA	13149-1_{1..401}	lnc-POTEF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-POTEF-1:1	chr2	130691752	130692152	-	lnc-POTEF-1	lnc-POTEF-1:1	XLOC_002320	linc-HS6ST1-7	NA	NA	NA	inter
CUST_48253_PI429285431	1.6515155	A	1.8142331	A	0.893340702003948	0	lncRNA	52115-1_{1..323}	hg19_lincRNAsTranscripts_TCONS_l2_00000969 range=chr1:741031-745528 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000969 range=chr1:741031-745528 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	   741031	   741353	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35778_PI429285431	3.1243153	P	3.0846772	P	1.02785595668369	0	lncRNA	37192-2_{3001..4442}	n344462|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_10|NULL|-1.2985500|-0.3316243	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n344462|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_10|NULL|-1.2985500|-0.3316243	chr9	 96931534	 96932975	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10"	NA	inter
CUST_11118_PI429285431	0.9127007	A	0.91753024	A	0.996658014871228	0	lncRNA	12676-1_{1..267}	lnc-NDFIP2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDFIP2-4:1	chr13	 80369221	 80369487	+	lnc-NDFIP2-4	lnc-NDFIP2-4:1	XLOC_010448	linc-SLITRK5-14	NA	NA	NA	inter
CUST_6599_PI429285431	1.0592276	A	0.8914121	A	1.12335623269775	0	lncRNA	6547-1_{1..921}	"transcript_id ""ENST00000588158.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588158.1"" | genecode_v17"	chr19	 56989552	 56990472	+	ENSG00000166770.6	ENST00000588158.1	AC004696.2	AC004696.2-007	ZNF471	NA	chr19:57019212-57022035	inter
CUST_6961_PI429285431	0.88535273	A	0.8964412	A	0.992343519605162	0	lncRNA	6909-1_{1..308}	"transcript_id ""ENST00000427360.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427360.1"" | genecode_v17"	chr22	 27600173	 27600480	+	ENSG00000238195.1	ENST00000427360.1	CTA-503F6.2	CTA-503F6.2-001	NA	NA	NA	inter
CUST_12562_PI429285431	3.1642416	P	2.7794676	A	1.30565523852604	0	lncRNA	14172-1_{1..269}	lnc-PKDCC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PKDCC-1:1	chr2	 42301570	 42301838	+	lnc-PKDCC-1	lnc-PKDCC-1:1	XLOC_001443	linc-EML4	NA	NA	NA	inter
CUST_37503_PI429285431	7.621876	P	7.3431587	P	1.2131158236262	0	lncRNA	38606-1_{1..271}	n345974|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1523|NULL|-1.5979500|-0.0429376	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345974|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1523|NULL|-1.5979500|-0.0429376	chr19	 12754404	 12754674	+	NA	NA	NA	NA	MAN2B1	"hg19_refFlat_RPL10L:range=chr14:47120295-471209395'pad=0,hg19_refFlat_RPL10L:range=chr14:47120295-471209395'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RPL10:range=chrX:153626861-1536293645'pad=0,hg19_refFlat_RPL10:range=chrX:153626861-1536293645'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_RPL10:range=chrX:153626861-1536291955'pad=0,hg19_refFlat_RPL10:range=chrX:153626861-1536291955'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00chr19:12754034-12764799"	NA	inter
CUST_8193_PI429285431	1.0209086	A	1.2283213	A	0.866089065927047	0	lncRNA	9791-1_{1..442}	lnc-GLT1D1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GLT1D1-1:3	chr12	129597610	129598051	+	lnc-GLT1D1-1	lnc-GLT1D1-1:3	ENSG00000249196	RP11-669N7.2	TMEM132D	NA	chr12:129587610-129607839	inner
LNCA_21_P0011246	0.9066199	A	1.2613806	A	0.781999342696709	0	lncRNA	TCONS_l2_00007749	NA	NA	NA	NA	XLOC_l2_004208	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004208), lincRNA [TCONS_l2_00007749]"	chr14:60498778-60519895	hs|14q23.1	Agilent_HUMAN_G3V2	TCONS_l2_00007749	TCONS_l2_00007749	chr14	 60498778	 60519895	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31345_PI429285431	2.2453816	A	2.6533873	A	0.753664477090986	0	lncRNA	33127-1_{1..1279}	n337813|AK129673|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|196|NULL|-1.1918700|-0.3264654	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337813|AK129673|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|196|NULL|-1.1918700|-0.3264654	chrX	106969877	106971155	-	NA	NA	NA	NA	TSC22D3	NA	chrX:106959877-106981156	inner
CUST_24573_PI429285431	2.407323	A	2.2245693	A	1.13504830771594	0	lncRNA	26121-1_{1..1081}	lnc-RPRML-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RPRML-3:7	chr17	 45144780	 45145860	-	lnc-RPRML-3	lnc-RPRML-3:7	ENSG00000262879.1	RP11-156P1.3	NA	"hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0,hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0,hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0,hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0,hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0,hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0,hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70"	NA	inter
CUST_44260_PI429285431	2.9123569	A	1.2628804	A	3.13719781343044	0	lncRNA	48904-1_{1..3000}	"gi|284925116|ref|NR_033289.1| Homo sapiens glycerol kinase 5 (putative) (GK5), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|284925116|ref|NR_033289.1| Homo sapiens glycerol kinase 5 (putative) (GK5), transcript variant 2, non-coding RNA"	Chr3	141876369	141879368	-	256356	NR_033289.1	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_13222_PI429285431	5.2354684	P	5.4409766	P	0.867233144050264	0	lncRNA	14850-1_{1..383}	lnc-PPM1M-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPM1M-1:1	chr3	 52279409	 52279791	+	lnc-PPM1M-1	lnc-PPM1M-1:1	XLOC_002653	linc-PPM1M-1	WDR82	NA	chr3:52288438-52289536	inter
LNCA_21_P0004664	2.7102137	A	3.2537441	P	0.686089931540373	0	lncRNA	ENST00000443221	NA	NA	NA	NA	XLOC_005365	NA	ENST00000443221	THC2677074	NA	"BROAD Institute lincRNA (XLOC_005365), lincRNA [TCONS_00011870]"	chr6:81172757-81172816	hs|6q14.1	Agilent_HUMAN_G3V2	ENST00000443221	ENST00000443221	chr6	 81172757	 81172816	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51705_PI429285431	3.2535903	P	2.5425012	A	1.63703946265722	0	lncRNA	55262-1_{1..2587}	hg19_lincRNAsTranscripts_TCONS_l2_00011954 range=chr18:10712570-10718258 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011954 range=chr18:10712570-10718258 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 10712570	 10715156	-	NA	NA	NA	NA	FAM38B	NA	chr18:10702570-10728258	inner
CUST_5521_PI429285431	0.89238346	A	1.0445753	A	0.89988226147382	0	lncRNA	5452-1_{1..547}	"transcript_id ""ENST00000565451.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565451.1"" | genecode_v17"	chr16	 47758479	 47759025	+	ENSG00000261231.2	ENST00000565451.1	RP11-523L20.2	RP11-523L20.2-001	NA	NA	NA	inter
CUST_28382_PI429285431	1.248446	A	1.6816483	A	0.740616039825979	0	lncRNA	30034-1_{1..485}	n325697|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045270|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045270|-0.0316665|-0.3181970	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325697|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045270|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045270|-0.0316665|-0.3181970	chr13	 73018525	 73019009	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22455_PI429285431	8.054531	P	7.718774	P	1.26203944289208	0	lncRNA	24043-1_{1..2431}	lnc-PTPN20B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPN20B-1:3	chr10	 48922624	 48925054	-	lnc-PTPN20B-1	lnc-PTPN20B-1:3	ENSG00000204164.5	RP11-508M1.3	NA	NA	NA	inter
CUST_49505_PI429285431	1.9988154	A	2.804242	A	0.572192859805734	0	lncRNA	53296-1_{1..588}	hg19_lincRNAsTranscripts_TCONS_l2_00024657 range=chr6:26325070-26332220 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024657 range=chr6:26325070-26332220 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 26325070	 26325657	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45844_PI429285431	1.0154436	A	1.4870987	A	0.721136814751605	0	lncRNA	50176-1_{1..1968}	"gi|374671772|ref|NR_046266.1| Homo sapiens TBC1 domain family, member 10C (TBC1D10C), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374671772|ref|NR_046266.1| Homo sapiens TBC1 domain family, member 10C (TBC1D10C), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_046266.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009457	2.4715376	A	1.4018282	A	2.09901052397154	0	lncRNA	TCONS_00026283	NA	NA	NA	NA	XLOC_012628	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012628), lincRNA [TCONS_00026283]"	chr18:12075012-12075071	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_00026283	TCONS_00026283	chr18	 12075012	 12075071	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35665_PI429285431	6.1302114	P	6.9073377	P	0.583527964015707	0	lncRNA	37086-1_{1..343}	n342824|X64982|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5327|NULL|1.5739000|-0.1557463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342824|X64982|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5327|NULL|1.5739000|-0.1557463	chr7	141587321	141587663	+	NA	NA	NA	NA	OR9A4	NA	chr7:141577321-141597664	inter
CUST_39549_PI429285431	1.7518318	A	2.5512362	A	0.574586339880392	0	lncRNA	40494-1_{1..1451}	n387475|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ewq.1||-1.1012000|-0.2649771	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387475|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ewq.1||-1.1012000|-0.2649771	chr6	  1485930	  1487380	+	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00"	NA	inter
CUST_16867_PI429285431	1.2887987	A	1.0220132	A	1.2031241321204	0	lncRNA	18573-1_{1..1817}	lnc-XPR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-XPR1-1:1	chr1	180868088	180869904	+	lnc-XPR1-1	lnc-XPR1-1:1	XLOC_000478	linc-KIAA1614-2	XPR1	NA	chr1:180858088-180859415	inter
LNCA_21_P0005841	1.9781168	A	1.9548991	A	1.01622347765828	0	lncRNA	TCONS_00015020	NA	NA	NA	NA	XLOC_007094	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007094), lincRNA [TCONS_00015020]"	chr8:61377229-61377170	hs|8q12.1	Agilent_HUMAN_G3V2	TCONS_00015020	TCONS_00015020	chr8	 61377170	 61377229	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51553_PI429285431	7.6146164	P	7.314857	P	1.23093911101913	0	lncRNA	55118-1_{1..826}	hg19_lincRNAsTranscripts_TCONS_l2_00010576 range=chr17:15668208-15669173 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010576 range=chr17:15668208-15669173 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 15668208	 15669033	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34833_PI429285431	1.4137269	A	0.8947147	A	1.43297376811494	0	lncRNA	36263-1_{1..1476}	n341739|AJ420450|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4212|NULL|-1.2802200|-0.4909762	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341739|AJ420450|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4212|NULL|-1.2802200|-0.4909762	chr9	103068326	103069801	+	NA	NA	NA	NA	INVS	NA	chr9:103058326-103063426	inner
CUST_5872_PI429285431	0.905502	A	1.2448907	A	0.790376139788323	0	lncRNA	5802-1_{1..501}	"transcript_id ""ENST00000587078.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587078.1"" | genecode_v17"	chr17	 43623171	 43623671	+	ENSG00000267198.1	ENST00000587078.1	RP11-798G7.6	RP11-798G7.6-006	NA	"hg19_refFlat_RDM1:range=chr17:34249537-342577315'pad=0,hg19_refFlat_RDM1:range=chr17:34249537-342577315'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RDM1:range=chr17:34245346-342577315'pad=0,hg19_refFlat_RDM1:range=chr17:34245346-342577315'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RDM1:range=chr17:34245346-342572865'pad=0,hg19_refFlat_RDM1:range=chr17:34245346-342572865'pad=0 3'pad=0 strand=- repeatMasking=none,-22.20"	NA	inter
CUST_34122_PI429285431	0.90494525	A	1.5836302	A	0.624734474959298	0	lncRNA	35644-2_{3001..5413}	n340956|AL833496|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3421|NULL|1.2389200|-0.2067956	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340956|AL833496|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3421|NULL|1.2389200|-0.2067956	chr11	  6630525	  6632937	-	NA	NA	NA	NA	TPP1	"hg19_refFlat_ILK:range=chr11:6625502-66318425'pad=0,hg19_refFlat_ILK:range=chr11:6625502-66318425'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.50chr11:6633997-6640692"	NA	inner
CUST_25976_PI429285431	0.90163636	A	0.9022901	A	0.999546964613716	0	lncRNA	27496-1_{1..510}	lnc-AKAP17A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AKAP17A-2:1	chrX	  1755135	  1755644	+	lnc-AKAP17A-2	lnc-AKAP17A-2:1	ENSG00000249358.1	RP13-297E16.3	ASMT	NA	chrX:1745135-1761974	inner
CUST_31692_PI429285431	3.1691022	A	1.068006	A	4.2903525416967	0	lncRNA	33437-2_{3001..4542}	n338218|BX648801|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|610|NULL|0.0886407|-0.3540070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338218|BX648801|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|610|NULL|0.0886407|-0.3540070	chr1	149819064	149820605	-	NA	NA	NA	NA	HIST2H2AA4	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30chr1:149822628-149823161"	NA	inter
CUST_20979_PI429285431	5.763906	P	6.029801	P	0.831682626411351	0	lncRNA	22608-1_{1..589}	lnc-CDIPT-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDIPT-1:4	chr16	 29831505	 29832093	-	lnc-CDIPT-1	lnc-CDIPT-1:4	ENSG00000261962.1	AC009133.20	MAZ	"hg19_refFlat_PAGR1:range=chr16:29827847-298310755'pad=0,hg19_refFlat_PAGR1:range=chr16:29827847-298310755'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.00;hg19_refFlat_MAZ:range=chr16:29818023-298215525'pad=0,hg19_refFlat_MAZ:range=chr16:29818023-298215525'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.00chr16:29821505-29822504"	NA	inner
CUST_2416_PI429285431	1.0637556	A	1.4051087	A	0.789300681503528	0	lncRNA	2408-1_{1..736}	"transcript_id ""ENST00000517722.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517722.1"" | genecode_v17"	chr5	161985691	161986426	-	ENSG00000254186.1	ENST00000517722.1	RP11-167P20.1	RP11-167P20.1-001	NA	NA	NA	inter
CUST_6489_PI429285431	8.290697	P	8.381405	P	0.939061793228283	0	lncRNA	6431-1_{1..715}	"transcript_id ""ENST00000412740.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412740.2"" | genecode_v17"	chr19	 36806262	 36806976	-	ENSG00000232677.2	ENST00000412740.2	LINC00665	LINC00665-001	ZFP14	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60chr19:36825355-36831394"	NA	inter
CUST_38156_PI429285431	2.4376304	A	2.6742284	A	0.84874436727498	0	lncRNA	39228-1_{1..2031}	n381378|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ich.2||-0.2576060|-0.3137686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381378|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ich.2||-0.2576060|-0.3137686	chr1	247285277	247287307	-	NA	NA	NA	NA	ZNF124	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80chr1:247283036-247323252"	NA	inner
CUST_40631_PI429285431	13.156791	P	12.99397	P	1.11947398315509	0	lncRNA	41372-1_{1..2269}	n410126|NR_036564|lncRNA|Homosapiens||RefGeneNoncode|NR_036564||9.4487200|-0.1347582	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410126|NR_036564|lncRNA|Homosapiens||RefGeneNoncode|NR_036564||9.4487200|-0.1347582	chr1	156278751	156281019	-	NA	NA	NA	NA	CCT3	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70chr1:156278752-156308206"	NA	inner
CUST_29339_PI429285431	2.35782	A	2.2611306	A	1.06931684825831	0	lncRNA	31091-1_{1..838}	n332580|AK311275|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000430141|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000430141|-0.2531860|-0.2111570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332580|AK311275|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000430141|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000430141|-0.2531860|-0.2111570	chr6	 90277863	 90278700	-	NA	NA	NA	NA	ANKRD6	"hg19_refFlat_ANKRD6:range=chr6:90276696-903407235'pad=0,hg19_refFlat_ANKRD6:range=chr6:90276696-903407235'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90chr6:90267863-90343553"	NA	inner
CUST_30149_PI429285431	3.7274914	P	2.5618126	A	2.24338744020213	0	lncRNA	31923-1_{1..711}	n334798|AJ242977|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245496|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245496|3.5811600|-0.5612393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334798|AJ242977|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245496|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245496|3.5811600|-0.5612393	chr14	 45693511	 45694221	-	NA	NA	NA	NA	MIS18BP1	NA	chr14:45683511-45710373	inner
CUST_34425_PI429285431	0.88702637	A	2.490935	A	0.32898446612392	0	lncRNA	35905-1_{1..541}	n341301|AF085922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3770|NULL|-0.8402280|-0.1968345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341301|AF085922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3770|NULL|-0.8402280|-0.1968345	chr7	111821015	111821555	-	NA	NA	NA	NA	DOCK4	NA	chr7:111811015-111831554	inner
CUST_23630_PI429285431	1.3153505	A	0.9024251	A	1.33138276727825	0	lncRNA	25196-1_{1..1520}	lnc-ITPRIP-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ITPRIP-3:1	chr10	106424975	106426494	-	lnc-ITPRIP-3	lnc-ITPRIP-3:1	ENSG00000226387.1	RP11-483B5.3	SORCS3	NA	chr10:106414975-106435974	inner
CUST_45259_PI429285431	2.2006497	A	0.9238618	A	2.42298907525957	0	lncRNA	49712-1_{1..3000}	"gi|323510647|ref|NR_037873.1| Homo sapiens zinc fingers and homeoboxes 1 (ZHX1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|323510647|ref|NR_037873.1| Homo sapiens zinc fingers and homeoboxes 1 (ZHX1), transcript variant 3, non-coding RNA"	Chr8	124260690	124263689	-	11244	NR_037873.1	NA	NA	NA	NA	NA	inter
CUST_17820_PI429285431	0.9050863	A	0.92065454	A	0.989266933190912	0	lncRNA	19556-1_{1..293}	lnc-STIM2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STIM2-3:1	chr4	 27932803	 27933095	+	lnc-STIM2-3	lnc-STIM2-3:1	XLOC_003486	linc-PCDH7-7	NA	NA	NA	inter
LNCA_21_P0008737	0.89826274	A	0.89815456	A	1.00007498747341	0	lncRNA	TCONS_00023670	NA	NA	NA	NA	XLOC_011470	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011470), lincRNA [TCONS_00023670]"	chr15:48097007-48095610	hs|15q21.1	Agilent_HUMAN_G3V2	TCONS_00023670	TCONS_00023670	chr15	 48095610	 48097007	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19750_PI429285431	4.1786265	P	4.9318476	P	0.59327746921616	0	lncRNA	21408-1_{1..576}	lnc-C16orf95-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf95-1:1	chr16	 87325974	 87326549	-	lnc-C16orf95-1	lnc-C16orf95-1:1	ENSG00000261697.1	RP11-178L8.5	NA	NA	NA	inter
LNCA_21_P0008390	10.344478	P	9.546667	P	1.73846135844908	0	lncRNA	THC2654170	NA	NA	NA	NA	XLOC_010933	NA	NA	THC2654170	NA	"BROAD Institute lincRNA (XLOC_010933), lincRNA [TCONS_00022632]"	chr14:101402717-101402776	hs|14q32.31	Agilent_HUMAN_G3V2	THC2654170	THC2654170	chr14	101402717	101402776	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29454_PI429285431	10.550637	P	10.69988	P	0.90172348400745	0	lncRNA	31211-1_{1..357}	n332857|AF075460|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066154|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066154|2.3717200|-0.0635398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332857|AF075460|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066154|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066154|2.3717200|-0.0635398	chr19	 38989751	 38990107	+	NA	NA	NA	NA	RYR1	NA	chr19:38979751-39000587	inner
LNCA_21_P0007054	3.6031308	P	4.002856	P	0.758002651459079	0	lncRNA	TCONS_00018702	NA	NA	NA	NA	XLOC_008433	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008433), lincRNA [TCONS_00018702]"	chr10:30128606-30128665	hs|10p11.23	Agilent_HUMAN_G3V2	TCONS_00018702	TCONS_00018702	chr10	 30128606	 30128665	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50875_PI429285431	6.2576046	P	6.9802957	P	0.605966061636802	0	lncRNA	54519-1_{1..1398}	hg19_lincRNAsTranscripts_TCONS_l2_00004786 range=chr11:117007846-117009567 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004786 range=chr11:117007846-117009567 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	117007846	117009243	+	NA	NA	NA	NA	PAFAH1B2	NA	chr11:117015000-117019567	inter
CUST_7782_PI429285431	8.080879	P	8.128018	P	0.967853772150623	0	lncRNA	9406-2_{3001..3081}	lnc-RNF186-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF186-1:1	chr1	 20019321	 20019401	-	lnc-RNF186-1	lnc-RNF186-1:1	ENSG00000250744	ENST00000512048	TMCO4	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_CHRDL2:range=chr11:74407543-744419335'pad=0,hg19_refFlat_CHRDL2:range=chr11:74407543-744419335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20chr1:20008706-20026628"	NA	inner
CUST_40869_PI429285431	8.8772955	P	8.2934885	P	1.4987990828902	0	lncRNA	41567-2_{3001..6000}	n410672|NR_037921|lncRNA|Homosapiens||RefGeneNoncode|NR_037921||4.1761400|-0.2266335	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n410672|NR_037921|lncRNA|Homosapiens||RefGeneNoncode|NR_037921||4.1761400|-0.2266335	chr20	  3830445	  3833444	+	NA	NA	NA	NA	MAVS	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr20:3827446-3856770"	NA	inner
CUST_27864_PI429285431	10.599303	P	10.668016	P	0.95348820692162	0	lncRNA	29457-1_{1..563}	n325100|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328354|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328354|-1.2018800|-0.3601028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325100|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328354|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328354|-1.2018800|-0.3601028	chr2	238872089	238872651	-	NA	NA	NA	NA	UBE2F	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80chr2:238875587-238884000"	NA	inter
CUST_12528_PI429285431	0.8960011	A	1.4196162	A	0.695626548942061	0	lncRNA	14139-1_{1..1107}	lnc-ZNF74-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF74-1:1	chr22	 20855028	 20856134	+	lnc-ZNF74-1	lnc-ZNF74-1:1	XLOC_014159	linc-MED15	KLHL22	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80chr22:20845028-20850170"	NA	inter
CUST_24330_PI429285431	4.9059997	P	5.17313	P	0.830970807349446	0	lncRNA	25883-1_{1..551}	lnc-KCNMB4-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNMB4-1:5	chr12	 70914566	 70915116	+	lnc-KCNMB4-1	lnc-KCNMB4-1:5	ENSG00000258168.1	RP11-588H23.3	PTPRB	NA	chr12:70910630-70924619	inner
CUST_38211_PI429285431	1.5325996	A	0.9215174	A	1.52740452194805	0	lncRNA	39277-2_{3001..3743}	n381569|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lgo.1||5.7850500|-0.1883787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n381569|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lgo.1||5.7850500|-0.1883787	chr10	124519209	124519951	+	NA	NA	NA	NA	NA	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90"	NA	inter
CUST_35916_PI429285431	5.1713433	P	5.3249984	P	0.898970014505091	0	lncRNA	37286-2_{3001..6000}	n344561|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_109|NULL|-1.3805400|-0.3217581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344561|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_109|NULL|-1.3805400|-0.3217581	chr6	167644550	167647549	+	NA	NA	NA	NA	UNC93A	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30chr6:167631550-167674481"	NA	inter
CUST_41737_PI429285431	5.294243	P	4.9047046	P	1.3099742017255	0	lncRNA	43269-1_{1..132}	ENST00000581052 ncrna:miRNA chromosome:GRCh37:15:99797744:99797875:1 gene:ENSG00000264771 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581052 ncrna:miRNA chromosome:GRCh37:15:99797744:99797875:1 gene:ENSG00000264771 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 99797744	 99797875	+	ENSG00000264771	ENST00000581052	NA	NA	LRRC28	NA	chr15:99791652-99807875	inner
CUST_33254_PI429285431	1.0637729	A	1.4612105	A	0.759205526842689	0	lncRNA	34840-1_{1..2174}	n339958|AK055036|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2411|NULL|-0.9548010|-0.2539011	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339958|AK055036|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2411|NULL|-0.9548010|-0.2539011	chr10	 11000369	 11002542	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10"	NA	inter
CUST_22032_PI429285431	1.5789094	A	1.3703613	A	1.15552470114929	0	lncRNA	23641-1_{1..432}	lnc-MTHFR-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTHFR-2:1	chr1	 11883296	 11883727	-	lnc-MTHFR-2	lnc-MTHFR-2:1	ENSG00000236997.1	RP5-934G17.2	CLCN6	NA	chr1:11873296-11893337	inter
LNCA_21_P0009994	2.85415	A	0.8898311	A	3.90228432980214	0	lncRNA	TCONS_00028271	NA	NA	NA	NA	XLOC_013617	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013617), lincRNA [TCONS_00028271]"	chr20:62961233-62961292	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028271	TCONS_00028271	chr20	 62961233	 62961292	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41486_PI429285431	0.901194	A	0.906537	A	0.996303364058056	0	lncRNA	42692-1_{1..81}	ENST00000384870 ncrna:miRNA chromosome:GRCh37:X:133304228:133304308:-1 gene:ENSG00000207602 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384870 ncrna:miRNA chromosome:GRCh37:X:133304228:133304308:-1 gene:ENSG00000207602 gene_biotype:miRNA transcript_biotype:miRNA	chrX	133304228	133304308	-	ENSG00000207602	ENST00000384870	NA	NA	NA	NA	NA	inter
CUST_28638_PI429285431	0.9106137	A	0.922996	A	0.991453970372065	0	lncRNA	30329-1_{1..868}	n326016|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047578|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047578|-0.8017250|-0.3778677	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326016|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047578|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047578|-0.8017250|-0.3778677	chr10	 36225807	 36226674	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008223	0.8944449	A	0.8904053	A	1.00280396111655	0	lncRNA	TCONS_00022124	NA	NA	NA	NA	XLOC_010732	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010732), lincRNA [TCONS_00022124]"	chr13:112925837-112925778	hs|13q34	Agilent_HUMAN_G3V2	TCONS_00022124	TCONS_00022124	chr13	112925778	112925837	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45404_PI429285431	6.4432645	P	6.5366707	P	0.937307154487768	0	lncRNA	49832-2_{3001..3977}	"gi|388890253|ref|NR_051962.1| Homo sapiens inversin (INVS), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388890253|ref|NR_051962.1| Homo sapiens inversin (INVS), transcript variant 3, non-coding RNA"	Chr9	102864502	102865478	+	27130	NR_051962.1	NA	NA	NA	NA	NA	inter
CUST_31095_PI429285431	3.7810373	P	4.2203717	P	0.737474770619361	0	lncRNA	32886-1_{1..402}	n337374|DQ655930|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393043|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393043|0.8611660|-0.1569809	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337374|DQ655930|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393043|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393043|0.8611660|-0.1569809	chr7	127231764	127232165	+	NA	NA	NA	NA	GCC1	NA	chr7:127221764-127225654	inner
CUST_41756_PI429285431	4.8250175	P	5.1038275	P	0.824270632569681	0	lncRNA	43304-1_{1..96}	ENST00000385104 ncrna:miRNA chromosome:GRCh37:17:17717150:17717245:-1 gene:ENSG00000207839 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385104 ncrna:miRNA chromosome:GRCh37:17:17717150:17717245:-1 gene:ENSG00000207839 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 17717150	 17717245	-	ENSG00000207839	ENST00000385104	NA	NA	RAI1	NA	chr17:17707150-17714767	inner
CUST_28662_PI429285431	0.89605415	A	0.88832736	A	1.00537017065376	0	lncRNA	30354-1_{1..472}	n326041|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047282|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047282|-0.0365761|-0.3431798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326041|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047282|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047282|-0.0365761|-0.3431798	chr10	 26972162	 26972633	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48373_PI429285431	1.0871474	A	0.9300023	A	1.11507836282584	0	lncRNA	52226-1_{1..328}	hg19_lincRNAsTranscripts_TCONS_l2_00001389 range=chr1:95131780-95145121 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001389 range=chr1:95131780-95145121 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 95131780	 95132107	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35143_PI429285431	0.90579486	A	1.9372625	A	0.489212224607313	0	lncRNA	36545-1_{1..1691}	n342114|BC005269|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4596|NULL|-1.2230200|-0.4213540	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342114|BC005269|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4596|NULL|-1.2230200|-0.4213540	chr6	118869490	118871180	+	NA	NA	NA	NA	C6orf204	NA	chr6:118859490-118891592	inner
CUST_51028_PI429285431	0.8986815	A	1.0823665	A	0.880451231498775	0	lncRNA	54671-1_{1..1959}	hg19_lincRNAsTranscripts_TCONS_l2_00007053 range=chr13:19775076-19783524 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007053 range=chr13:19775076-19783524 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 19775076	 19777034	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28911_PI429285431	1.811305	A	1.0346665	A	1.71313459098182	0	lncRNA	30628-1_{1..677}	n326336|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000087108|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000087108|-1.3613500|-0.3035803	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326336|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000087108|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000087108|-1.3613500|-0.3035803	chr1	167998693	167999369	-	NA	NA	NA	NA	DCAF6	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr1:167988693-168010413"	NA	inner
CUST_12893_PI429285431	8.389159	P	8.28222	P	1.07694084004145	0	lncRNA	14521-1_{1..415}	lnc-TMEM105-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM105-2:9	chr17	 79358929	 79359343	-	lnc-TMEM105-2	lnc-TMEM105-2:9	XLOC_012586	linc-TMEM105-1	LOC100130370	NA	chr17:79352934-79357447	inter
CUST_34830_PI429285431	12.064881	P	12.425207	P	0.77898853486282	0	lncRNA	36260-1_{1..1712}	n341735|CR624153|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4208|NULL|4.8243300|-0.1162814	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341735|CR624153|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4208|NULL|4.8243300|-0.1162814	chr9	100807888	100809599	+	NA	NA	NA	NA	TRIM14	NA	chr9:100831563-100855327	inner
LNCA_21_P0014575	0.90198696	A	0.89706224	A	1.00341938859958	0	lncRNA	XR_110357	XR_110357	XR_110357	NA	NA	LOC100506684	uncharacterized LOC100506684	NA	THC2651372	NA	"PREDICTED: Homo sapiens hypothetical LOC100506684 (LOC100506684), miscRNA [XR_110357]"	chr12:43110849-43110908	hs|12q12	Agilent_HUMAN_G3V2	XR_110357	XR_110357	chr12	 43110849	 43110908	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25136_PI429285431	4.732766	P	5.1838336	P	0.731501333774438	0	lncRNA	26674-1_{1..424}	lnc-ACTG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACTG1-1:1	chr17	 79428691	 79429114	-	lnc-ACTG1-1	lnc-ACTG1-1:1	ENSG00000263271.1	RP11-1055B8.8	BAHCC1	"hg19_refFlat_BAHCC1:range=chr17:79373540-794308435'pad=0,hg19_refFlat_BAHCC1:range=chr17:79373540-794308435'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.70chr17:79418691-79433358"	NA	inner
CUST_31772_PI429285431	1.2729095	A	0.9028038	A	1.29244751918535	0	lncRNA	33513-1_{1..2018}	n338314|BC071777|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|708|NULL|-1.1623200|-0.3060380	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338314|BC071777|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|708|NULL|-1.1623200|-0.3060380	chr19	 12456766	 12458783	-	NA	NA	NA	NA	ZNF442	NA	chr19:12460185-12468752	inter
CUST_35589_PI429285431	14.429967	P	13.7428055	P	1.61011250641271	0	lncRNA	37004-1_{1..1887}	n342725|BC053983|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5228|NULL|0.3320300|-0.2311545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342725|BC053983|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5228|NULL|0.3320300|-0.2311545	chr2	162196009	162197895	-	NA	NA	NA	NA	PSMD14	NA	chr2:162186009-162207896	inner
LNCA_21_P0003577	0.9043124	A	0.8991132	A	1.00361031235514	0	lncRNA	TCONS_00007998	NA	NA	NA	NA	XLOC_003461	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003461), lincRNA [TCONS_00007998]"	chr4:13520542-13520601	hs|4p15.33	Agilent_HUMAN_G3V2	TCONS_00007998	TCONS_00007998	chr4	 13520542	 13520601	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23098_PI429285431	5.107637	P	5.363914	P	0.837245719415813	0	lncRNA	24669-1_{1..526}	lnc-CYP1B1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYP1B1-2:1	chr2	 38263293	 38263818	-	lnc-CYP1B1-2	lnc-CYP1B1-2:1	ENSG00000235848.1	AC016689.1	FAM82A1	NA	chr2:38253293-38273484	inner
CUST_22399_PI429285431	1.0352037	A	0.8904883	A	1.10551254769325	0	lncRNA	23988-1_{1..802}	lnc-FAM171B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM171B-1:1	chr2	188391549	188392350	+	lnc-FAM171B-1	lnc-FAM171B-1:1	ENSG00000224063.1	AC007319.1	TFPI	"hg19_refFlat_IMPDH1:range=chr7:128033061-1280459185'pad=0,hg19_refFlat_IMPDH1:range=chr7:128033061-1280459185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_IMPDH1:range=chr7:128033061-1280499555'pad=0,hg19_refFlat_IMPDH1:range=chr7:128033061-1280499555'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80chr2:188381549-188402007"	NA	inner
CUST_12681_PI429285431	2.1704786	A	2.5681412	A	0.759087131811922	0	lncRNA	14298-1_{1..327}	lnc-NUCB2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUCB2-2:1	chr11	 17089698	 17090024	+	lnc-NUCB2-2	lnc-NUCB2-2:1	XLOC_009078	linc-NUCB2-1	RPS13	NA	chr11:17095939-17099220	inter
CUST_16810_PI429285431	4.2093973	P	3.908438	P	1.23196331792717	0	lncRNA	18516-1_{1..838}	lnc-TSC22D1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSC22D1-2:1	chr13	 44947251	 44948088	-	lnc-TSC22D1-2	lnc-TSC22D1-2:1	XLOC_010587	linc-CCDC122-2	SERP2	NA	chr13:44947978-44957669	inter
CUST_18991_PI429285431	0.9050659	A	1.1673793	A	0.833749906719397	0	lncRNA	20682-2_{3001..5859}	lnc-HSCB-1:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HSCB-1:18	chr22	 28405517	 28408375	+	lnc-HSCB-1	lnc-HSCB-1:18	ENSG00000235954	TTC28-AS1	TTC28	"hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0,hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0 3'pad=0 strand=- repeatMasking=none,-103.70chr22:28392517-28414569"	NA	inner
CUST_36557_PI429285431	0.9126581	A	0.90537757	A	1.00505923376362	0	lncRNA	37753-1_{1..651}	n345055|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_604|NULL|-1.5904500|-0.2344208	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345055|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_604|NULL|-1.5904500|-0.2344208	chr9	100632618	100633268	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4824_PI429285431	1.1165389	A	1.9293685	A	0.5692642476648	0	lncRNA	4767-1_{1..581}	"transcript_id ""ENST00000557625.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000557625.1"" | genecode_v17"	chr14	 52013347	 52013927	-	ENSG00000258537.1	ENST00000557625.1	FRMD6-AS2	FRMD6-AS2-002	FRMD6	NA	chr14:52003347-52076638	inter
CUST_51518_PI429285431	5.1357903	P	5.334604	P	0.871266694438833	0	lncRNA	55091-1_{1..567}	hg19_lincRNAsTranscripts_TCONS_l2_00009912 range=chr16:90260559-90289143 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009912 range=chr16:90260559-90289143 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 90260559	 90261125	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6918_PI429285431	0.89576226	A	0.89228076	A	1.00241610600033	0	lncRNA	6870-1_{1..875}	"transcript_id ""ENST00000423580.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423580.2"" | genecode_v17"	chr22	 17156906	 17157780	-	ENSG00000189295.8	ENST00000423580.2	ANKRD62P1-PARP4P3	ANKRD62P1-PARP4P3-002	NA	NA	NA	inter
CUST_40825_PI429285431	2.1115716	A	2.0806482	A	1.021665835851	0	lncRNA	41528-1_{1..1939}	n410594|NR_037852_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037852_6||0.1329550|-0.2223921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410594|NR_037852_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037852_6||0.1329550|-0.2223921	chr6	  2877746	  2879684	-	NA	NA	NA	NA	SERPINB9	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60chr6:2887504-2899999"	NA	inner
CUST_46466_PI429285431	3.4855456	P	3.5467682	P	0.958451543222116	0	lncRNA	50667-1_{1..3000}	"gi|223718264|ref|NR_026891.1| Homo sapiens uncharacterized protein FLJ10038 (FLJ10038), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223718264|ref|NR_026891.1| Homo sapiens uncharacterized protein FLJ10038 (FLJ10038), non-coding RNA"	Chr15	 50641133	 50644132	-	55056	NR_026891.1	NA	NA	NA	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
CUST_23290_PI429285431	2.5098972	A	3.1636784	P	0.635612234678217	0	lncRNA	24861-1_{1..677}	lnc-SNURF-3:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SNURF-3:17	chr15	 25458606	 25459282	+	lnc-SNURF-3	lnc-SNURF-3:17	ENSG00000224078.4	SNHG14	SNRPN	NA	chr15:25448606-25468676	inter
LNCA_21_P0008819	1.4024178	A	1.6179698	A	0.861216580350489	0	lncRNA	TCONS_00023895	NA	NA	NA	NA	XLOC_011197	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011197), lincRNA [TCONS_00023895]"	chr15:30117676-30117735	hs|15q13.1	Agilent_HUMAN_G3V2	TCONS_00023895	TCONS_00023895	chr15	 30117676	 30117735	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42509_PI429285431	5.5982847	P	6.0627794	P	0.724724865736457	0	lncRNA	45288-1_{1..135}	ENST00000383885 ncrna:snoRNA chromosome:GRCh37:12:49050431:49050565:-1 gene:ENSG00000206612 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000383885 ncrna:snoRNA chromosome:GRCh37:12:49050431:49050565:-1 gene:ENSG00000206612 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 49050431	 49050565	-	ENSG00000206612	ENST00000383885	NA	NA	C12orf41	NA	chr12:49046994-49060565	inner
CUST_25047_PI429285431	2.2511392	A	1.9251673	A	1.25350860506957	0	lncRNA	26586-1_{1..548}	lnc-QPCT-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-QPCT-3:4	chr2	 37873819	 37874366	+	lnc-QPCT-3	lnc-QPCT-3:4	ENSG00000236213.1	AC006369.2	CDC42EP3	NA	chr2:37870743-37883841	inner
CUST_133_PI429201921	0.8952404	A	1.1084098	A	0.862640048149689	0	lncRNA	122-1_{1..3000}	TC05002918.hg.1	TCONS_l2_00023683-XLOC_l2_011959 // Broad TUCP // linc-MYO10-5 chr5:-:19035305-19038849 // chr5 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00022810-XLOC_l2_011959 // Broad TUCP // linc-MYO10-5 chr5:-:19037664-19038869 // chr5 // 100 // 100 // 0 // --- // 0/// TCONS_l2_00023684-XLOC_l2_011959 // Broad TUCP // linc-MYO10-5 chr5:-:19036014-19038908 // chr5 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr5:-:19035305-19038849	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00023683-XLOC_l2_011959	linc-MYO10-5	chr5	 19035305	 19038849	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1354_PI429285431	2.423035	A	2.8523583	A	0.742610026872306	0	lncRNA	1342-1_{1..384}	"transcript_id ""ENST00000465946.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000465946.1"" | genecode_v17"	chr3	 55394471	 55394854	-	ENSG00000242775.1	ENST00000465946.1	RP11-875H7.2	RP11-875H7.2-001	NA	NA	NA	inter
LNCA_21_P0008163	0.913422	A	1.1135983	A	0.870444186908398	0	lncRNA	TCONS_00022022	NA	NA	NA	NA	XLOC_010616	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010616), lincRNA [TCONS_00022022]"	chr13:51764768-51764709	hs|13q14.3	Agilent_HUMAN_G3V2	TCONS_00022022	TCONS_00022022	chr13	 51764709	 51764768	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17734_PI429285431	1.0590228	A	0.90673804	A	1.11132806159809	0	lncRNA	19466-1_{1..498}	lnc-C5orf17-8:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf17-8:4	chr5	 27494342	 27494839	+	lnc-C5orf17-8	lnc-C5orf17-8:4	XLOC_004323	linc-CDH6-5	NA	NA	NA	inter
CUST_27272_PI429285431	8.320888	P	8.323064	P	0.998492848630186	0	lncRNA	28827-1_{1..762}	n324420|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041866|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041866|-0.8763020|-0.2987627	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324420|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041866|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041866|-0.8763020|-0.2987627	chr6	112328384	112329145	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16278_PI429285431	1.3099827	A	1.1658313	A	1.10508044860138	0	lncRNA	17983-1_{1..415}	lnc-CYP4V2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CYP4V2-1:1	chr4	187137432	187137846	+	lnc-CYP4V2-1	lnc-CYP4V2-1:1	XLOC_003821	linc-KLKB1	CYP4V2	NA	chr4:187127432-187134617	inter
CUST_32773_PI429285431	0.922177	A	1.3142096	A	0.762055195120364	0	lncRNA	34408-1_{1..3000}	n339412|BC045680|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1844|NULL|-1.0030400|-0.3140401	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339412|BC045680|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1844|NULL|-1.0030400|-0.3140401	chr3	106967220	106970219	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80"	NA	inter
LNCA_21_P0011045	0.91341174	A	0.92186695	A	0.994156435457497	0	lncRNA	ENST00000546043	NA	NA	NA	NA	XLOC_l2_002952	NA	ENST00000546043	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002952), lincRNA [TCONS_l2_00005598]"	chr12:40964569-40964628	hs|12q12	Agilent_HUMAN_G3V2	ENST00000546043	ENST00000546043	chr12	 40964569	 40964628	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37862_PI429285431	1.1681771	A	1.3815979	A	0.86248974000578	0	lncRNA	38955-1_{1..413}	n346397|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1947|NULL|-1.3172100|-0.2614978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346397|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1947|NULL|-1.3172100|-0.2614978	chr1	149576634	149577046	+	NA	NA	NA	NA	LOC100288037	NA	chr1:149671871-149672242	inter
LNCA_21_P0003742	1.9768174	A	3.2498856	P	0.413778847159224	0	lncRNA	TCONS_00008492	NA	NA	NA	NA	XLOC_003959	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003959), lincRNA [TCONS_00008492]"	chr4:58291202-58291143	hs|4q12	Agilent_HUMAN_G3V2	TCONS_00008492	TCONS_00008492	chr4	 58291143	 58291202	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46986_PI429285431	1.3870192	A	0.90534055	A	1.39636746696056	0	lncRNA	51086-1_{1..3000}	"gi|217035127|ref|NR_024565.1| Homo sapiens zinc finger protein 271 (ZNF271), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|217035127|ref|NR_024565.1| Homo sapiens zinc finger protein 271 (ZNF271), transcript variant 1, non-coding RNA"	Chr18	 32870236	 32873235	+	10778	NR_024565.1	NA	NA	NA	NA	NA	inter
CUST_36050_PI429285431	0.90594554	A	0.90062594	A	1.00369407206904	0	lncRNA	37366-1_{1..3000}	n344647|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_195|NULL|-1.2743400|-0.3099453	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344647|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_195|NULL|-1.2743400|-0.3099453	chr11	 27620890	 27623889	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30"	NA	inter
CUST_22335_PI429285431	0.9021827	A	0.9015253	A	1.0004557787921	0	lncRNA	23930-1_{1..470}	lnc-CPT2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPT2-4:1	chr1	 53733884	 53734353	+	lnc-CPT2-4	lnc-CPT2-4:1	ENSG00000234578.1	RP4-784A16.1	LRP8	NA	chr1:53723884-53744273	inner
CUST_9808_PI429285431	5.306566	P	5.5499268	P	0.844775090299891	0	lncRNA	11324-1_{1..889}	lnc-CHRAC1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHRAC1-1:4	chr8	141475884	141476772	+	lnc-CHRAC1-1	lnc-CHRAC1-1:4	XLOC_006941	linc-CHRAC1-1	TRAPPC9	NA	chr8:141465884-141468678	inter
CUST_32711_PI429285431	0.89769787	A	0.89922094	A	0.998944845391225	0	lncRNA	34354-1_{1..2317}	n339342|AK026206|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1774|NULL|3.7107100|-0.2279148	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339342|AK026206|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1774|NULL|3.7107100|-0.2279148	chr3	 45719656	 45721972	-	NA	NA	NA	NA	SACM1L	NA	chr3:45730754-45740374	inter
CUST_49503_PI429285431	0.89437205	A	0.89330065	A	1.00074291371304	0	lncRNA	53294-1_{1..739}	hg19_lincRNAsTranscripts_TCONS_l2_00024648 range=chr6:24797606-24799099 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024648 range=chr6:24797606-24799099 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 24797606	 24798344	-	NA	NA	NA	NA	FAM65B	NA	chr6:24804513-24809099	inter
CUST_50433_PI429285431	5.5123253	P	4.0784874	P	2.70164459750496	0	lncRNA	54137-1_{1..1093}	hg19_lincRNAsTranscripts_TCONS_l2_00030183 range=chrX:40936206-40937659 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030183 range=chrX:40936206-40937659 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 40936206	 40937298	+	NA	NA	NA	NA	USP9X	NA	chrX:40944888-40947659	inter
CUST_13848_PI429285431	9.49974	P	9.411478	P	1.06308871858953	0	lncRNA	15491-1_{1..813}	lnc-BAI3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BAI3-3:1	chr6	 68707946	 68708758	+	lnc-BAI3-3	lnc-BAI3-3:1	XLOC_005338	linc-BAI3-3	NA	NA	NA	inter
CUST_42583_PI429285431	9.35588	P	9.488428	P	0.912218921245375	0	lncRNA	45427-1_{1..130}	ENST00000364113 ncrna:snoRNA chromosome:GRCh37:11:8705774:8705903:1 gene:ENSG00000200983 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364113 ncrna:snoRNA chromosome:GRCh37:11:8705774:8705903:1 gene:ENSG00000200983 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	  8705774	  8705903	+	ENSG00000200983	ENST00000364113	NA	NA	ST5	NA	chr11:8714899-8715903	inter
CUST_19205_PI429285431	3.209826	A	3.998959	P	0.578691757267437	0	lncRNA	20875-1_{1..374}	lnc-CCDC166-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC166-1:2	chr8	144795714	144796087	-	lnc-CCDC166-1	lnc-CCDC166-1:2	ENSG00000254574.1	RP11-429J17.4	MAPK15	NA	chr8:144798507-144804633	inter
CUST_44488_PI429285431	1.0014178	A	1.1276852	A	0.916198813725953	0	lncRNA	49090-1_{1..1763}	"gi|224177499|ref|NR_026994.1| Homo sapiens uncharacterized LOC340094 (LOC340094), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224177499|ref|NR_026994.1| Homo sapiens uncharacterized LOC340094 (LOC340094), non-coding RNA"	Chr5	  5034472	  5036234	+	340094	NR_026994.1	NA	NA	NA	NA	NA	inter
CUST_22362_PI429285431	1.1004913	A	1.5579498	A	0.728268070760742	0	lncRNA	23956-1_{1..400}	lnc-ASAH2B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ASAH2B-4:1	chr10	 53066329	 53066728	+	lnc-ASAH2B-4	lnc-ASAH2B-4:1	ENSG00000235279.1	RP11-539E19.2	PRKG1	NA	chr10:53056329-53076469	inner
CUST_31976_PI429285431	7.4423375	P	7.375714	P	1.04726278735562	0	lncRNA	33699-1_{1..3000}	n338536|AK127521|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|938|NULL|-0.7747030|-0.1395392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338536|AK127521|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|938|NULL|-0.7747030|-0.1395392	chr14	105308999	105311998	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47690_PI429285431	1.3895388	A	1.5498673	A	0.894821297949979	0	lncRNA	51664-3_{6001..6450}	"gi|385137062|ref|NR_047600.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 30, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137062|ref|NR_047600.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 30, non-coding RNA"	ChrY	 15366259	 15366708	-	7404	NR_047600.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0010537	1.7357228	A	0.8989434	A	1.78605858070042	0	lncRNA	TCONS_l2_00000390	NA	NA	NA	NA	XLOC_l2_000297	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000297), lincRNA [TCONS_l2_00000390]"	chr1:89889998-89891735	hs|1p22.2	Agilent_HUMAN_G3V2	TCONS_l2_00000390	TCONS_l2_00000390	chr1	 89889998	 89891735	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00319779	7.057039	P	7.3671765	P	0.806564883684696	0	lncRNA	ENST00000553134	XR_110299	XR_110299	NA	Hs.728856	LOC100506948	NA	ENST00000553134	THC2535118	NA	"PREDICTED: Homo sapiens hypothetical LOC100506948 (LOC100506948), miscRNA [XR_110299]"	chr15:25245462-25245521	hs|15q11.2	Agilent_HUMAN_G3V2	ENST00000553134	ENST00000553134	chr15	 25245462	 25245521	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12103_PI429285431	2.1550732	A	1.7104111	A	1.36099531442196	0	lncRNA	13700-1_{1..415}	lnc-SLC35G4-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC35G4-1:4	chr18	 11503733	 11504147	+	lnc-SLC35G4-1	lnc-SLC35G4-1:4	XLOC_012626	linc-GNAL-1	NA	NA	NA	inter
LNCA_19_P00318187	2.162875	A	2.8534167	A	0.619621152281555	0	lncRNA	ENST00000417485	NA	NA	NA	NA	XLOC_001849	NA	ENST00000417485	NA	NA	"BROAD Institute lincRNA (XLOC_001849), lincRNA [TCONS_00003102]"	chr2:216578423-216578482	hs|2q35	Agilent_HUMAN_G3V2	ENST00000417485	ENST00000417485	chr2	216578423	216578482	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38353_PI429285431	1.2554922	A	0.9907145	A	1.20145090775593	0	lncRNA	39396-1_{1..2031}	n382108|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vsl.1||-0.9848570|-0.2307729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382108|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vsl.1||-0.9848570|-0.2307729	chr13	113407014	113409044	-	NA	NA	NA	NA	ATP11A	NA	chr13:113397014-113419045	inner
CUST_33055_PI429285431	2.6485507	A	2.676402	A	0.980880099057189	0	lncRNA	34666-1_{1..411}	n339744|AF172328|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2190|NULL|-0.5982490|-0.0927608	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339744|AF172328|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2190|NULL|-0.5982490|-0.0927608	chr20	 60709735	 60710145	-	NA	NA	NA	NA	LSM14B	NA	chr20:60699735-60710434	inner
CUST_1015_PI429285431	0.8993226	A	0.9047828	A	0.996222430798978	0	lncRNA	1004-1_{1..461}	"transcript_id ""ENST00000417284.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417284.1"" | genecode_v17"	chr2	108440497	108440957	-	ENSG00000230651.2	ENST00000417284.1	AC096655.2	AC096655.2-002	RGPD4	NA	chr2:108443388-108452257	inter
CUST_24395_PI429285431	0.910792	A	0.9165205	A	0.99603717915651	0	lncRNA	25948-1_{1..1193}	lnc-PDCD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDCD1-1:1	chr2	242752799	242753991	-	lnc-PDCD1-1	lnc-PDCD1-1:1	ENSG00000224272.2	AC114730.3	GAL3ST2	NA	chr2:242742799-242743702	inner
LNCA_21_P0012633	0.8938394	A	0.8917944	A	1.00141849109236	0	lncRNA	TCONS_l2_00020890	NA	NA	NA	NA	XLOC_l2_010947	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010947), lincRNA [TCONS_l2_00020890]"	chr4:174623479-174623538	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_l2_00020890	TCONS_l2_00020890	chr4	174623479	174623538	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38491_PI429285431	6.4284315	P	6.297925	P	1.09467795229776	0	lncRNA	39507-2_{3001..3732}	n383019|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fih.2||-0.2038870|-0.2647695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383019|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fih.2||-0.2038870|-0.2647695	chr16	 84699933	 84700664	+	NA	NA	NA	NA	KLHL36	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50chr16:84686933-84695916"	NA	inter
LNCA_21_P0009185	0.8931284	A	0.8905851	A	1.00176443601293	0	lncRNA	ENST00000431343	NA	AK098696	NA	Hs.638371	XLOC_012396	NA	ENST00000431343	THC2631173	NA	"BROAD Institute lincRNA (XLOC_012396), lincRNA [TCONS_00025211]"	chr17:15170858-15170799	hs|17p12	Agilent_HUMAN_G3V2	ENST00000431343	ENST00000431343	chr17	 15170799	 15170858	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_859_PI429285431	3.3436928	P	3.4309142	P	0.94133399371902	0	lncRNA	853-1_{1..569}	"transcript_id ""ENST00000438736.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438736.1"" | genecode_v17"	chr2	 43268332	 43268900	-	ENSG00000233978.1	ENST00000438736.1	AC016735.3	AC016735.3-001	NA	NA	NA	inter
LNCA_21_P0003395	0.89286196	A	0.8899033	A	1.00205289113881	0	lncRNA	TCONS_00007603	NA	NA	NA	NA	XLOC_003661	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003661), lincRNA [TCONS_00007603]"	chr4:119350522-119350581	hs|4q26	Agilent_HUMAN_G3V2	TCONS_00007603	TCONS_00007603	chr4	119350522	119350581	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47211_PI429285431	6.2370768	P	6.2490296	P	0.991749176816007	0	lncRNA	51286-1_{1..2509}	"gi|338797804|ref|NR_040047.1| Homo sapiens SDCBP2 antisense RNA 1 (SDCBP2-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338797804|ref|NR_040047.1| Homo sapiens SDCBP2 antisense RNA 1 (SDCBP2-AS1), transcript variant 1, non-coding RNA"	Chr20	  1305987	  1308495	+	100507495	NR_040047.1	NA	NA	NA	NA	NA	inter
CUST_29723_PI429285431	8.435671	P	8.711438	P	0.826011057669673	0	lncRNA	31485-1_{1..720}	n333394|BC007236|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086764|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086764|1.6822900|-0.1638953	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333394|BC007236|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086764|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086764|1.6822900|-0.1638953	chr9	138999587	139000306	-	NA	NA	NA	NA	C9orf69	NA	chr9:139006427-139010731	inter
CUST_27081_PI429285431	0.8813194	A	0.8826616	A	0.99907009048833	0	lncRNA	28613-1_{1..516}	n324191|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000308984|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000308984|-1.2999500|-0.4357407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324191|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000308984|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000308984|-1.2999500|-0.4357407	chr7	126777417	126777932	+	NA	NA	NA	NA	GRM8	NA	chr7:126767417-126788813	inter
CUST_20663_PI429285431	2.4066455	A	2.1385512	A	1.20421609077359	0	lncRNA	22302-1_{1..457}	lnc-LRRC40-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC40-1:1	chr1	 70686506	 70686962	-	lnc-LRRC40-1	lnc-LRRC40-1:1	ENSG00000228988.1	RP4-677H15.4	SRSF11	NA	chr1:70676506-70696706	inner
CUST_43347_PI429285431	1.56617	A	2.1737943	A	0.656276509551777	0	lncRNA	48169-2_{3001..6000}	"gi|383276544|ref|NR_015368.2| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|383276544|ref|NR_015368.2| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 6, non-coding RNA"	Chr1	   765971	   768970	+	643837	NR_015368.2	NA	NA	NA	NA	NA	inter
CUST_33796_PI429285431	6.6097937	P	5.931871	P	1.5998345347914	0	lncRNA	35348-1_{1..795}	n340584|BC038569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3046|NULL|-1.0969100|-0.3684862	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340584|BC038569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3046|NULL|-1.0969100|-0.3684862	chr5	113911737	113912531	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29849_PI429285431	1.0235285	A	0.8841494	A	1.10143098540364	0	lncRNA	31612-1_{1..311}	n333746|L07253|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191813|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191813|0.3117540|-0.2654631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333746|L07253|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191813|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191813|0.3117540|-0.2654631	chr4	145035828	145036138	-	NA	NA	NA	NA	GYPA	NA	chr4:145030456-145061904	inner
CUST_3864_PI429285431	2.7835054	A	2.8781903	A	0.936476761622759	0	lncRNA	3833-1_{1..571}	"transcript_id ""ENST00000527770.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527770.1"" | genecode_v17"	chr11	 15574401	 15574971	+	ENSG00000254946.1	ENST00000527770.1	RP11-531H8.1	RP11-531H8.1-001	NA	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10"	NA	inter
CUST_36682_PI429285431	0.91778195	A	1.1069744	A	0.87709653960531	0	lncRNA	37865-1_{1..220}	n345171|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_720|NULL|-1.2847800|-0.2680514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345171|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_720|NULL|-1.2847800|-0.2680514	chr12	 27364834	 27365053	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43771_PI429285431	1.6423222	A	1.3487475	A	1.22567348376727	0	lncRNA	48506-2_{3001..6000}	"gi|410170795|ref|XR_171117.1| PREDICTED: Homo sapiens hydrocephalus-inducing protein homolog (LOC100996292), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170795|ref|XR_171117.1| PREDICTED: Homo sapiens hydrocephalus-inducing protein homolog (LOC100996292), misc_RNA"	NA	NA	NA	NA	NA	XR_171117.1	NA	NA	NA	NA	NA	Unknown
CUST_49467_PI429285431	0.88614273	A	1.020832	A	0.910865996263292	0	lncRNA	53262-1_{1..1398}	hg19_lincRNAsTranscripts_TCONS_l2_00024969 range=chr6:147182804-147240209 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024969 range=chr6:147182804-147240209 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	147182804	147184201	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16380_PI429285431	2.8841245	A	2.7212205	A	1.11953838970729	0	lncRNA	18078-1_{1..479}	lnc-SEC23IP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEC23IP-1:1	chr10	121968339	121968817	+	lnc-SEC23IP-1	lnc-SEC23IP-1:1	XLOC_008642	linc-PPAPDC1A	NA	NA	NA	inter
CUST_21293_PI429285431	0.8942758	A	0.8955809	A	0.999095782665744	0	lncRNA	22918-1_{1..466}	lnc-HSPA4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSPA4-1:1	chr5	132559776	132560241	+	lnc-HSPA4-1	lnc-HSPA4-1:1	ENSG00000248245.1	CTB-49A3.2	FSTL4	NA	chr5:132549776-132569995	inner
CUST_4705_PI429285431	1.0076656	A	0.8952741	A	1.08101871517647	0	lncRNA	4652-1_{1..1493}	"transcript_id ""ENST00000548050.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000548050.1"" | genecode_v17"	chr14	 19406795	 19408287	-	ENSG00000257504.1	ENST00000548050.1	RP11-536C10.7	RP11-536C10.7-001	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_FAR2:range=chr12:29446335-294867275'pad=0,hg19_refFlat_FAR2:range=chr12:29446335-294867275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_FAR2:range=chr12:29423383-294867275'pad=0,hg19_refFlat_FAR2:range=chr12:29423383-294867275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00"	NA	inter
CUST_40687_PI429285431	0.920918	A	0.9139221	A	1.0048609647019	0	lncRNA	41422-1_{1..548}	n410245|NR_037172_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037172_6||-0.9760870|-0.2460993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410245|NR_037172_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037172_6||-0.9760870|-0.2460993	chr6	  3468303	  3468850	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35556_PI429285431	5.8324995	P	6.0868683	P	0.83835384640549	0	lncRNA	36970-1_{1..511}	n342685|X99660|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5187|NULL|1.6777000|-0.1715365	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342685|X99660|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5187|NULL|1.6777000|-0.1715365	chr17	 28951282	 28951792	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21419_PI429285431	1.019666	A	0.9263545	A	1.06681609793407	0	lncRNA	23039-1_{1..543}	lnc-TMEM88B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM88B-2:1	chr1	  1357849	  1358391	+	lnc-TMEM88B-2	lnc-TMEM88B-2:1	ENSG00000225905.1	RP4-758J18.7	TMEM88B	"hg19_refFlat_ANKRD65:range=chr1:1354480-13563855'pad=0,hg19_refFlat_ANKRD65:range=chr1:1354480-13563855'pad=0 3'pad=0 strand=- repeatMasking=none,-110.40chr1:1361508-1363167"	NA	inter
LNCA_21_P0010300	9.732817	P	9.587349	P	1.10608940265668	0	lncRNA	TCONS_00029178	NA	NA	NA	NA	XLOC_014118	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014118), lincRNA [TCONS_00029178]"	chr21:45867494-45867206	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029178	TCONS_00029178	chr21	 45867206	 45867494	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7478_PI429285431	1.1870433	A	2.1170828	A	0.524843971747103	0	lncRNA	9120-1_{1..3000}	lnc-MAPK15-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MAPK15-1:3	chr8	144823268	144826267	+	lnc-MAPK15-1	lnc-MAPK15-1:3	ENSG00000203499	RP11-429J17.6	FAM83H	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10chr8:144813268-144815914"	NA	inter
CUST_19385_PI429285431	0.8888686	A	0.88947445	A	0.99958014494447	0	lncRNA	21047-1_{1..264}	lnc-ROM1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ROM1-3:1	chr11	 62309382	 62309645	+	lnc-ROM1-3	lnc-ROM1-3:1	ENSG00000250659.2	RP11-864I4.3	AHNAK	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80chr11:62299382-62314332"	NA	inner
CUST_20329_PI429285431	3.4290624	P	4.186513	P	0.591540724852083	0	lncRNA	21972-1_{1..332}	lnc-SPCS3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPCS3-2:1	chr4	177627057	177627388	+	lnc-SPCS3-2	lnc-SPCS3-2:1	ENSG00000248388.1	RP11-313E19.2	VEGFC	NA	chr4:177617057-177637299	inner
CUST_893_PI429285431	0.8894641	A	1.3891624	A	0.707254668590243	0	lncRNA	882-1_{1..703}	"transcript_id ""ENST00000453476.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453476.1"" | genecode_v17"	chr2	 60586351	 60587053	-	ENSG00000223929.1	ENST00000453476.1	AC007381.2	AC007381.2-001	NA	NA	NA	inter
CUST_5856_PI429285431	2.0806482	A	1.998901	A	1.05829893543659	0	lncRNA	5785-1_{1..833}	"transcript_id ""ENST00000431109.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431109.2"" | genecode_v17"	chr17	 41031197	 41032029	-	ENSG00000213373.3	ENST00000431109.2	LINC00671	LINC00671-201	G6PC	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70chr17:41052815-41060751"	NA	inter
CUST_30727_PI429285431	0.9046772	A	1.3980341	A	0.710370265451688	0	lncRNA	32510-1_{1..369}	n336279|Y12699|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325725|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325725|2.4071500|-0.0932014	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336279|Y12699|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325725|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325725|2.4071500|-0.0932014	chr14	106330425	106330793	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_32_P88310	5.914849	P	5.8407073	P	1.05273454811948	0	lncRNA	XR_109284	XR_109284	XR_109284	   730183	Hs.620916	LOC730183	uncharacterized LOC730183	NA	THC2539230	NA	"PREDICTED: Homo sapiens hypothetical LOC730183 (LOC730183), miscRNA [XR_109284]"	chr16:30709143-30709084	hs|16p11.2	Agilent_HUMAN_G3V2	XR_109284	XR_109284	chr16	 30709084	 30709143	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11222_PI429285431	0.8997141	A	0.9029017	A	0.997792963142535	0	lncRNA	12780-1_{1..807}	lnc-PCDH17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-PCDH17-1:1	chr13	 58806969	 58807775	+	lnc-PCDH17-1	lnc-PCDH17-1:1	XLOC_010402	linc-TDRD3-2	NA	NA	NA	inter
CUST_29128_PI429285431	1.7745484	A	1.7357228	A	1.02727724959777	0	lncRNA	30867-1_{1..471}	n326632|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000020814|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000020814|-0.8871020|-0.0292738	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326632|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000020814|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000020814|-0.8871020|-0.0292738	chr1	 41102172	 41102642	+	NA	NA	NA	NA	RIMS3	NA	chr1:41092172-41124929	inner
CUST_43705_PI429285431	2.555802	A	2.427182	A	1.09324746262734	0	lncRNA	48454-1_{1..1277}	"gi|374349212|ref|NR_046213.1| Homo sapiens long intergenic non-protein coding RNA 260 (LINC00260), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374349212|ref|NR_046213.1| Homo sapiens long intergenic non-protein coding RNA 260 (LINC00260), non-coding RNA"	Chr1	203699705	203700981	+	84719	NR_046213.1	NA	NA	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20"	NA	inter
LNCA_21_P0001431	0.90656817	A	0.9007	A	1.00407578901829	0	lncRNA	TCONS_00001313	NA	NA	NA	NA	XLOC_000592	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000592), lincRNA [TCONS_00001313]"	chr1:226410089-226410148	hs|1q42.12	Agilent_HUMAN_G3V2	TCONS_00001313	TCONS_00001313	chr1	226410089	226410148	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4806_PI429285431	4.7812033	P	5.192177	P	0.752115586464164	0	lncRNA	4750-1_{1..522}	"transcript_id ""ENST00000557062.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557062.1"" | genecode_v17"	chr14	 49524431	 49524952	-	ENSG00000258868.1	ENST00000557062.1	RP11-816J8.1	RP11-816J8.1-001	NA	NA	NA	inter
CUST_51642_PI429285431	4.575818	P	4.5121574	P	1.04511420382533	0	lncRNA	55212-1_{1..2065}	hg19_lincRNAsTranscripts_TCONS_l2_00010847 range=chr17:46810468-46821265 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010847 range=chr17:46810468-46821265 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 46810468	 46812532	+	NA	NA	NA	NA	HOXB13	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30chr17:46802125-46806111"	NA	inter
CUST_867_PI429285431	6.6647253	P	6.811611	P	0.90319806473992	0	lncRNA	861-1_{1..393}	"transcript_id ""ENST00000450550.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000450550.1"" | genecode_v17"	chr2	 47550560	 47550952	-	ENSG00000234690.2	ENST00000450550.1	AC073283.4	AC073283.4-003	NA	NA	NA	inter
CUST_16629_PI429285431	1.4487014	A	1.9396706	A	0.711546921222808	0	lncRNA	18331-1_{1..341}	lnc-POM121L12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POM121L12-2:1	chr7	 52569451	 52569791	+	lnc-POM121L12-2	lnc-POM121L12-2:1	XLOC_006100	linc-POM121L12-2	NA	NA	NA	inter
LNCA_21_P0002220	0.8966621	A	1.9159682	A	0.493353585846798	0	lncRNA	THC2747012	NA	NA	NA	NA	XLOC_001483	NA	NA	THC2747012	NA	"BROAD Institute lincRNA (XLOC_001483), lincRNA [TCONS_00003693]"	chr2:057940112-057940171	hs|2p16.1	Agilent_HUMAN_G3V2	THC2747012	THC2747012	chr2	 57940112	 57940171	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37447_PI429285431	0.8900255	A	0.8979167	A	0.994545168885487	0	lncRNA	38546-1_{1..596}	n345895|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1444|NULL|-1.3127300|-0.1138380	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345895|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1444|NULL|-1.3127300|-0.1138380	chr2	209907729	209908324	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP4:range=chr2:159389697-1595371895'pad=0,hg19_refFlat_PKP4:range=chr2:159389697-1595371895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20"	NA	inter
CUST_19792_PI429285431	1.6646969	A	1.3773439	A	1.22039908215589	0	lncRNA	21450-1_{1..483}	lnc-ITPR2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITPR2-2:1	chr12	 26472535	 26473017	-	lnc-ITPR2-2	lnc-ITPR2-2:1	ENSG00000255750.1	RP11-283G6.5	NA	"hg19_refFlat_SSPN:range=chr12:26377256-263840095'pad=0,hg19_refFlat_SSPN:range=chr12:26377256-263840095'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_SSPN:range=chr12:26348606-263840095'pad=0,hg19_refFlat_SSPN:range=chr12:26348606-263840095'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10"	NA	inter
CUST_21878_PI429285431	0.8943972	A	0.9049021	A	0.992745003654421	0	lncRNA	23488-1_{1..3000}	lnc-HSD17B2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-HSD17B2-2:1	chr16	 82862870	 82865869	+	lnc-HSD17B2-2	lnc-HSD17B2-2:1	ENSG00000260862.1	RP11-22H5.2	CDH13	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70chr16:82852870-82873243"	NA	inner
CUST_9790_PI429285431	2.0588636	A	1.7805545	A	1.21277262993936	0	lncRNA	11306-1_{1..722}	lnc-SRBD1-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRBD1-4:6	chr2	 45419279	 45420000	-	lnc-SRBD1-4	lnc-SRBD1-4:6	XLOC_002078	linc-SIX2-2	NA	NA	NA	inter
CUST_22392_PI429285431	6.9847507	P	7.0810633	P	0.93542079094401	0	lncRNA	23982-1_{1..1585}	lnc-SDK2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SDK2-2:3	chr17	 71819827	 71821411	-	lnc-SDK2-2	lnc-SDK2-2:3	ENSG00000177338.8	LINC00469	NA	NA	NA	inter
CUST_42299_PI429285431	10.383603	P	10.4887	P	0.929742429022324	0	lncRNA	44914-1_{1..139}	ENST00000517026 ncrna:snoRNA chromosome:GRCh37:17:7809440:7809578:1 gene:ENSG00000252835 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517026 ncrna:snoRNA chromosome:GRCh37:17:7809440:7809578:1 gene:ENSG00000252835 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	  7809440	  7809578	+	ENSG00000252835	ENST00000517026	NA	NA	CHD3	NA	chr17:7799440-7816075	inner
CUST_11628_PI429285431	0.8957903	A	0.9026443	A	0.995260436570824	0	lncRNA	13206-1_{1..3000}	lnc-ACP1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACP1-3:2	chr2	   200164	   203163	+	lnc-ACP1-3	lnc-ACP1-3:2	XLOC_001300	linc-ACP1	NA	NA	NA	inter
CUST_29734_PI429285431	7.264251	P	7.0953903	P	1.12417037381552	0	lncRNA	31496-1_{1..876}	n333407|BC010169|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087451|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087451|1.9586300|-0.2290210	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333407|BC010169|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087451|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087451|1.9586300|-0.2290210	chr20	 47740921	 47741796	-	NA	NA	NA	NA	STAU1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30chr20:47730921-47804904"	NA	inner
CUST_38225_PI429285431	5.199997	P	3.782038	P	2.67207221798886	0	lncRNA	39288-2_{3001..3256}	n381616|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001mmy.1||-0.0931735|-0.2741765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381616|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001mmy.1||-0.0931735|-0.2741765	chr11	 17356588	 17356843	+	NA	NA	NA	NA	NUCB2	NA	chr11:17343588-17353070	inter
CUST_32770_PI429285431	0.90543485	A	0.9113619	A	0.995900109596815	0	lncRNA	34405-2_{3001..4881}	n339408|CR627153|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1840|NULL|-1.0581700|-0.4146319	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339408|CR627153|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1840|NULL|-1.0581700|-0.4146319	chr3	105568134	105570014	-	NA	NA	NA	NA	CBLB	NA	chr3:105555134-105579968	inner
CUST_34753_PI429285431	5.856152	P	5.842803	P	1.00929576140371	0	lncRNA	36196-1_{1..1495}	n341662|BC043439|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4133|NULL|-1.3549800|-0.3384241	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341662|BC043439|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4133|NULL|-1.3549800|-0.3384241	chr9	 21394886	 21396380	-	NA	NA	NA	NA	IFNA8	NA	chr9:21398613-21406341	inter
CUST_49711_PI429285431	4.147265	P	4.183593	P	0.975133737450003	0	lncRNA	53488-1_{1..340}	hg19_lincRNAsTranscripts_TCONS_l2_00025724 range=chr7:25223965-25233536 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025724 range=chr7:25223965-25233536 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 25223965	 25224304	+	NA	NA	NA	NA	C7orf31	NA	chr7:25213965-25219817	inter
CUST_25968_PI429285431	0.89143926	A	0.8961788	A	0.99672019157297	0	lncRNA	27488-1_{1..680}	lnc-TRPM1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRPM1-1:6	chr15	 31521475	 31522154	-	lnc-TRPM1-1	lnc-TRPM1-1:6	ENSG00000259772.1	RP11-16E12.2	LOC283710	NA	chr15:31514970-31523050	inner
CUST_19783_PI429285431	5.9478426	P	6.4416537	P	0.710146656593829	0	lncRNA	21441-1_{1..529}	lnc-LENG9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LENG9-2:1	chr19	 54945822	 54946350	-	lnc-LENG9-2	lnc-LENG9-2:1	ENSG00000227407.1	AC008746.3	TTYH1	"hg19_refFlat_TTYH1:range=chr19:54926727-549473095'pad=0,hg19_refFlat_TTYH1:range=chr19:54926727-549473095'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_TTYH1:range=chr19:54926727-549475465'pad=0,hg19_refFlat_TTYH1:range=chr19:54926727-549475465'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90chr19:54935822-54947899"	NA	inner
CUST_7413_PI429285431	1.9473826	A	1.9043181	A	1.03030001523643	0	lncRNA	9056-1_{1..590}	lnc-CRYBA4-1:23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:23	chr22	 27061495	 27062084	+	lnc-CRYBA4-1	lnc-CRYBA4-1:23	ENSG00000225783	XLOC_014192	NA	NA	NA	inter
CUST_15635_PI429285431	0.92618847	A	0.9632052	A	0.974668328228674	0	lncRNA	17324-1_{1..266}	lnc-RP11-17A1.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-17A1.2.1-2:1	chr11	 23829736	 23830001	-	lnc-RP11-17A1.2.1-2	lnc-RP11-17A1.2.1-2:1	XLOC_009395	linc-LOC100500938-1	NA	NA	NA	inter
CUST_49789_PI429285431	4.9398913	P	4.607956	P	1.25870072376277	0	lncRNA	53546-1_{1..274}	hg19_lincRNAsTranscripts_TCONS_l2_00025907 range=chr7:62669577-62672161 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025907 range=chr7:62669577-62672161 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 62669577	 62669850	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34375_PI429285431	1.7006629	A	2.639193	A	0.521764212840549	0	lncRNA	35861-1_{1..2293}	n341244|AX747337|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3712|NULL|-0.9112390|-0.2292497	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341244|AX747337|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3712|NULL|-0.9112390|-0.2292497	chr7	 47834988	 47837280	+	NA	NA	NA	NA	PKD1L1	"hg19_refFlat_PKD1L1:range=chr7:47814741-479880375'pad=0,hg19_refFlat_PKD1L1:range=chr7:47814741-479880375'pad=0 3'pad=0 strand=- repeatMasking=none,-94.20chr7:47824988-47882414"	NA	inner
CUST_43064_PI429285431	8.112339	P	8.34653	P	0.850161598774298	0	lncRNA	46937-1_{1..117}	ENST00000408798 ncrna:snRNA chromosome:GRCh37:16:70886601:70886717:1 gene:ENSG00000221725 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408798 ncrna:snRNA chromosome:GRCh37:16:70886601:70886717:1 gene:ENSG00000221725 gene_biotype:snRNA transcript_biotype:snRNA	chr16	 70886601	 70886717	+	ENSG00000221725	ENST00000408798	NA	NA	HYDIN	NA	chr16:70876601-70896717	inner
CUST_33177_PI429285431	0.88699985	A	1.6727741	A	0.580040583728384	0	lncRNA	34770-1_{1..1935}	n339868|AK057465|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2316|NULL|-0.8741890|-0.3382326	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339868|AK057465|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2316|NULL|-0.8741890|-0.3382326	chr18	 45027542	 45029476	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11110_PI429285431	3.61575	P	3.921744	P	0.80888471241169	0	lncRNA	12666-1_{1..998}	lnc-CALN1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CALN1-1:3	chr7	 69062220	 69063217	-	lnc-CALN1-1	lnc-CALN1-1:3	XLOC_006493	linc-SBDS-8	AUTS2	NA	chr7:69063905-69072546	inter
CUST_22976_PI429285431	0.8985514	A	0.9007709	A	0.998462742625192	0	lncRNA	24550-1_{1..467}	lnc-COMMD6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COMMD6-2:2	chr13	 76209965	 76210431	-	lnc-COMMD6-2	lnc-COMMD6-2:2	ENSG00000261105.1	RP11-173B14.5	LMO7	NA	chr13:76199965-76220130	inner
CUST_22978_PI429285431	0.8904486	A	1.1277589	A	0.848325421222096	0	lncRNA	24552-1_{1..643}	lnc-GATAD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GATAD1-2:1	chr7	 92120557	 92121199	+	lnc-GATAD1-2	lnc-GATAD1-2:1	ENSG00000244055.1	AC007566.10	PEX1	"hg19_refFlat_PEX1:range=chr7:92116771-921577495'pad=0,hg19_refFlat_PEX1:range=chr7:92116771-921577495'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30chr7:92116337-92130924"	NA	inner
CUST_31919_PI429285431	0.9067036	A	0.9134253	A	0.995351709493817	0	lncRNA	33647-2_{3001..4942}	n338473|BX648736|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|870|NULL|0.1724360|-0.1914576	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338473|BX648736|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|870|NULL|0.1724360|-0.1914576	chr14	 99652758	 99654699	+	NA	NA	NA	NA	BCL11B	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-20.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90chr14:99639758-99664558"	NA	inner
CUST_39389_PI429285431	0.9230022	A	0.92940354	A	0.995572758482641	0	lncRNA	40352-1_{1..1921}	n386550|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010nwm.1||3.8941700|-0.2237565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386550|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010nwm.1||3.8941700|-0.2237565	chrY	  9215703	  9217623	+	NA	NA	NA	NA	FAM197Y6	NA	chrY:9215685-9228486	inner
LNCA_19_P00321568	10.995666	P	10.729202	P	1.20285604960701	0	lncRNA	XR_110527	XR_110527	XR_110527	NA	NA	LOC100507077	NA	NA	THC2676158	NA	"PREDICTED: Homo sapiens hypothetical LOC100507077 (LOC100507077), miscRNA [XR_110527]"	chr11:119617103-119617162	hs|11q23.3	Agilent_HUMAN_G3V2	XR_110527	XR_110527	chr11	119617103	119617162	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28894_PI429285431	0.9039904	A	1.0602921	A	0.89732238074145	0	lncRNA	30610-1_{1..1489}	n326317|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000084991|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000084991|-1.2104300|-0.4978624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326317|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000084991|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000084991|-1.2104300|-0.4978624	chr1	178794734	178796222	+	NA	NA	NA	NA	RALGPS2	NA	chr1:178784734-178812277	inner
CUST_12341_PI429285431	2.938758	A	3.4464903	P	0.703327094060004	0	lncRNA	13953-1_{1..3000}	lnc-AL035696.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL035696.1-2:1	chr6	   184601	   187600	+	lnc-AL035696.1-2	lnc-AL035696.1-2:1	XLOC_005117	linc-DUSP22-3	NA	NA	NA	inter
CUST_20997_PI429285431	1.0411154	A	1.9719518	A	0.524554144266697	0	lncRNA	22626-1_{1..383}	lnc-DDX20-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DDX20-2:3	chr1	112453408	112453790	+	lnc-DDX20-2	lnc-DDX20-2:3	ENSG00000237556.1	KCND3-AS1	KCND3	NA	chr1:112443408-112463552	inner
CUST_14854_PI429285431	4.495704	P	5.146408	P	0.636969412268891	0	lncRNA	16517-1_{1..317}	lnc-NAV1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAV1-1:1	chr1	201557667	201557983	+	lnc-NAV1-1	lnc-NAV1-1:1	XLOC_000523	linc-NAV1-1	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40"	NA	inter
CUST_39827_PI429285431	6.475196	P	5.615603	P	1.814526340758	0	lncRNA	40734-2_{3001..5734}	n406404|NR_015427|lncRNA|Homosapiens||RefGeneNoncode|NR_015427||1.0408200|-0.1933619	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n406404|NR_015427|lncRNA|Homosapiens||RefGeneNoncode|NR_015427||1.0408200|-0.1933619	chr9	136893560	136896293	+	NA	NA	NA	NA	BRD3	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60chr9:136895427-136906719"	NA	inner
CUST_32189_PI429285431	1.0952172	A	2.094759	A	0.500158825239182	0	lncRNA	33887-1_{1..1587}	n338761|AK021584|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1182|NULL|-1.0251500|-0.2542437	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338761|AK021584|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1182|NULL|-1.0251500|-0.2542437	chr2	 36991436	 36993022	+	NA	NA	NA	NA	VIT	NA	chr2:36981436-37003016	inner
CUST_5182_PI429285431	0.8851916	A	0.8983442	A	0.990924743389351	0	lncRNA	5123-1_{1..297}	"transcript_id ""ENST00000560159.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560159.1"" | genecode_v17"	chr15	 50786215	 50786511	-	ENSG00000259618.1	ENST00000560159.1	RP11-562A8.5	RP11-562A8.5-001	USP8	"hg19_refFlat_USP8:range=chr15:50731271-507912855'pad=0,hg19_refFlat_USP8:range=chr15:50731271-507912855'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60chr15:50776215-50793277"	NA	inner
LNCA_21_P0008346	2.5371876	A	2.6030183	A	0.955395045238692	0	lncRNA	TCONS_00022526	NA	NA	NA	NA	XLOC_010851	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010851), lincRNA [TCONS_00022526]"	chr14:61121522-61122603	hs|14q23.1	Agilent_HUMAN_G3V2	TCONS_00022526	TCONS_00022526	chr14	 61121522	 61122603	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50953_PI429285431	2.9102135	A	2.902105	P	1.00563620790298	0	lncRNA	54594-1_{1..447}	hg19_lincRNAsTranscripts_TCONS_l2_00005745 range=chr12:70290958-70297801 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005745 range=chr12:70290958-70297801 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 70290958	 70291404	+	NA	NA	NA	NA	LOC100652962	NA	chr12:70280958-70307801	inter
CUST_5293_PI429285431	7.53887	P	7.2934895	P	1.18540537149555	0	lncRNA	5233-1_{1..576}	"transcript_id ""ENST00000560663.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560663.1"" | genecode_v17"	chr15	 89912386	 89912961	+	ENSG00000255571.2	ENST00000560663.1	CTD-2335A18.1	CTD-2335A18.1-005	NA	NA	NA	inter
CUST_3625_PI429285431	3.2446516	P	2.949212	A	1.22725887527059	0	lncRNA	3595-1_{1..537}	"transcript_id ""ENST00000420825.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420825.1"" | genecode_v17"	chr10	 11002114	 11002650	+	ENSG00000231496.1	ENST00000420825.1	RP1-251M9.2	RP1-251M9.2-001	NA	NA	NA	inter
CUST_14161_PI429285431	1.9109037	A	1.4252926	A	1.40017883088999	0	lncRNA	15812-1_{1..341}	lnc-ARL4A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARL4A-2:1	chr7	 13783062	 13783402	+	lnc-ARL4A-2	lnc-ARL4A-2:1	XLOC_005989	linc-LOC100129335-4	NA	NA	NA	inter
CUST_17911_PI429285431	0.89894146	A	0.89741427	A	1.00105912792295	0	lncRNA	19642-1_{1..550}	lnc-PANK3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PANK3-1:1	chr5	167704277	167704826	-	lnc-PANK3-1	lnc-PANK3-1:1	XLOC_005075	linc-NUDCD2-5	NA	NA	NA	inter
CUST_34235_PI429285431	0.920082	A	0.92711174	A	0.995139207612824	0	lncRNA	35743-1_{1..3000}	n341094|AK022848|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3560|NULL|-1.0210700|-0.5190574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341094|AK022848|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3560|NULL|-1.0210700|-0.5190574	chr11	 89927673	 89930672	-	NA	NA	NA	NA	NAALAD2	NA	chr11:89917673-89925779	inter
LNCA_21_P0002224	0.8928652	A	0.8896008	A	1.0022652715156	0	lncRNA	TCONS_00003701	NA	NA	NA	NA	XLOC_001493	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001493), lincRNA [TCONS_00003701]"	chr2:62642337-62642396	hs|2p15	Agilent_HUMAN_G3V2	TCONS_00003701	TCONS_00003701	chr2	 62642337	 62642396	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46636_PI429285431	0.9120419	A	1.0594629	A	0.902863002772232	0	lncRNA	50811-1_{1..2804}	"gi|224465215|ref|NR_027079.1| Homo sapiens uncharacterized LOC283914 (LOC283914), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224465215|ref|NR_027079.1| Homo sapiens uncharacterized LOC283914 (LOC283914), transcript variant 1, non-coding RNA"	Chr16	 34597902	 34600705	+	283914	NR_027079.1	NA	NA	NA	"hg19_refFlat_AGGF1:range=chr5:76326592-763590775'pad=0,hg19_refFlat_AGGF1:range=chr5:76326592-763590775'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60"	NA	inter
CUST_22486_PI429285431	4.5078235	P	4.9283376	P	0.747158329270168	0	lncRNA	24073-1_{1..408}	lnc-PRICKLE4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRICKLE4-1:1	chr6	 41701656	 41702063	+	lnc-PRICKLE4-1	lnc-PRICKLE4-1:1	ENSG00000231102.1	RP11-298J23.5	TFEB	NA	chr6:41691656-41703997	inner
LNCA_21_P0008989	0.8943684	A	0.8903992	A	1.00275502792249	0	lncRNA	TCONS_00024498	NA	NA	NA	NA	XLOC_011816	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011816), lincRNA [TCONS_00024498]"	chr16:86774012-86774071	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024498	TCONS_00024498	chr16	 86774012	 86774071	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28845_PI429285431	0.90414953	A	0.91586196	A	0.991914427685386	0	lncRNA	30553-1_{1..492}	n326260|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088228|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088228|-1.1210100|-0.3438129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326260|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088228|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088228|-1.1210100|-0.3438129	chr1	207565423	207565914	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17922_PI429285431	0.884078	A	0.8811807	A	1.00201027322155	0	lncRNA	19654-1_{1..1433}	lnc-ADM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADM-1:1	chr11	 10323565	 10324997	+	lnc-ADM-1	lnc-ADM-1:1	XLOC_009060	linc-ADM-1	SBF2	NA	chr11:10313565-10315754	inter
CUST_21805_PI429285431	5.1284127	P	5.328449	P	0.870528659437724	0	lncRNA	23415-1_{1..574}	lnc-AC016251.1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC016251.1-1:9	chr15	 96865768	 96866341	-	lnc-AC016251.1-1	lnc-AC016251.1-1:9	ENSG00000247809.3	RP11-327J17.3	NR2F2	NA	chr15:96869157-96875874	inter
LNCA_21_P0008422	1.7357864	A	0.89165145	A	1.79518801574863	0	lncRNA	TCONS_00022711	NA	NA	NA	NA	XLOC_010997	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010997), lincRNA [TCONS_00022711]"	chr14:36738340-36738281	hs|14q13.3	Agilent_HUMAN_G3V2	TCONS_00022711	TCONS_00022711	chr14	 36738281	 36738340	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5376_PI429285431	2.8223166	A	3.228359	P	0.754690803993902	0	lncRNA	5313-1_{1..444}	"transcript_id ""ENST00000567961.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567961.1"" | genecode_v17"	chr16	  1025761	  1026204	-	ENSG00000260807.2	ENST00000567961.1	RP11-161M6.2	RP11-161M6.2-008	LMF1	NA	chr16:1015761-1031318	inter
CUST_13673_PI429285431	1.489665	A	1.1981717	A	1.22390645932181	0	lncRNA	15310-1_{1..218}	lnc-TPBG-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPBG-3:1	chr6	 82659466	 82659683	+	lnc-TPBG-3	lnc-TPBG-3:1	XLOC_005366	linc-TPBG-2	NA	NA	NA	inter
LNCA_21_P0013171	0.8967002	A	0.8923723	A	1.0030043758006	0	lncRNA	ENST00000447999	NA	NA	NA	NA	XLOC_l2_013277	NA	ENST00000447999	THC2707288	NA	"BROAD Institute lincRNA (XLOC_l2_013277), lincRNA [TCONS_l2_00027046]"	chr7:9808965-9809024	hs|7p21.3	Agilent_HUMAN_G3V2	ENST00000447999	ENST00000447999	chr7	  9808965	  9809024	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8985_PI429285431	4.040475	P	4.2553353	P	0.861629589558645	0	lncRNA	10516-1_{1..2316}	lnc-AC109486.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AC109486.1-1:1	chr5	 59785488	 59787803	+	lnc-AC109486.1-1	lnc-AC109486.1-1:1	ENSG00000152931	PART1	PDE4D	NA	chr5:59775488-59783925	inter
LNCA_21_P0010342	7.296188	P	7.658565	P	0.777881876634406	0	lncRNA	TCONS_00029362	NA	NA	NA	NA	XLOC_014156	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014156), lincRNA [TCONS_00029362]"	chr22:20188487-20188546	hs|22q11.21	Agilent_HUMAN_G3V2	TCONS_00029362	TCONS_00029362	chr22	 20188487	 20188546	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24109_PI429285431	6.561783	P	6.1537423	P	1.32688257287317	0	lncRNA	25660-1_{1..744}	lnc-ATAD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATAD1-2:1	chr10	 89419615	 89420358	-	lnc-ATAD1-2	lnc-ATAD1-2:1	ENSG00000196566.2	RP11-57C13.3	PAPSS2	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.30chr10:89409615-89429760"	NA	inner
CUST_23705_PI429285431	2.5735567	A	2.533485	A	1.02816492379794	0	lncRNA	25270-1_{1..388}	lnc-ATG16L2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATG16L2-3:1	chr11	 72404813	 72405200	+	lnc-ATG16L2-3	lnc-ATG16L2-3:1	ENSG00000256007.1	ARAP1-AS1	ARAP1	"hg19_refFlat_ARAP1:range=chr11:72396709-724242325'pad=0,hg19_refFlat_ARAP1:range=chr11:72396709-724242325'pad=0 3'pad=0 strand=- repeatMasking=none,-94.00;hg19_refFlat_ARAP1:range=chr11:72396709-724381735'pad=0,hg19_refFlat_ARAP1:range=chr11:72396709-724381735'pad=0 3'pad=0 strand=- repeatMasking=none,-94.00chr11:72396114-72414853"	NA	inner
LNCA_21_P0014842	3.300924	P	3.280021	P	1.01459432775737	0	lncRNA	XR_132712	XR_132712	XR_132712	NA	Hs.689627	LOC100508226	HHSL751	NA	THC2488101	NA	"PREDICTED: Homo sapiens HHSL751 (LOC100508226), miscRNA [XR_132712]"	chr3:65994640-65994581	hs|3p14.1	Agilent_HUMAN_G3V2	XR_132712	XR_132712	chr3	 65994581	 65994640	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29694_PI429285431	1.9880954	A	3.1228755	P	0.45540432562923	0	lncRNA	31456-1_{1..393}	n333356|AY266458|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085663|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085663|0.9868430|-0.1355937	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333356|AY266458|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085663|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085663|0.9868430|-0.1355937	chr6	170657334	170657726	+	NA	NA	NA	NA	FAM120B	NA	chr6:170647334-170707497	inner
CUST_18422_PI429285431	4.8592443	P	5.1665053	P	0.808174647561069	0	lncRNA	20147-1_{1..1588}	lnc-SERPINB9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SERPINB9-1:2	chr6	  2876527	  2878114	-	lnc-SERPINB9-1	lnc-SERPINB9-1:2	ENSG00000230438	RP11-420G6.4	NA	NA	NA	inter
CUST_5673_PI429285431	0.90105605	A	0.90312034	A	0.998570166394154	0	lncRNA	5598-1_{1..720}	"transcript_id ""ENST00000599619.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599619.1"" | genecode_v17"	chr16	 86371740	 86372459	-	ENSG00000168367.5	ENST00000599619.1	RP11-158I3.2	RP11-158I3.2-005	NA	NA	NA	inter
CUST_26857_PI429285431	0.8846637	A	0.91095006	A	0.981944670087787	0	lncRNA	28371-1_{1..588}	n323929|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055588|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055588|-0.8606690|-0.7661260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323929|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055588|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055588|-0.8606690|-0.7661260	chrX	   870955	   871542	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39857_PI429285431	0.90483636	A	0.90764654	A	0.998054027520512	0	lncRNA	40756-1_{1..608}	n406507|NR_024013|lncRNA|Homosapiens||RefGeneNoncode|NR_024013||5.0092300|-0.2171083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406507|NR_024013|lncRNA|Homosapiens||RefGeneNoncode|NR_024013||5.0092300|-0.2171083	chr13	100003673	100004280	+	NA	NA	NA	NA	UBAC2	NA	chr13:99993673-100014281	inter
CUST_398_PI429285431	2.2811115	A	1.6978701	A	1.49821160280118	0	lncRNA	390-1_{1..470}	"transcript_id ""ENST00000425124.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425124.1"" | genecode_v17"	chr1	143188828	143189297	+	ENSG00000232336.1	ENST00000425124.1	RP11-782C8.3	RP11-782C8.3-001	NA	NA	NA	inter
LNCA_21_P0001570	0.9051207	A	0.89988333	A	1.00363686565386	0	lncRNA	TCONS_00001634	NA	NA	NA	NA	XLOC_000971	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000971), lincRNA [TCONS_00001634]"	chr1:115813615-115813556	hs|1p13.2	Agilent_HUMAN_G3V2	TCONS_00001634	TCONS_00001634	chr1	115813556	115813615	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11843_PI429285431	5.1248746	P	5.0386004	P	1.06162496323277	0	lncRNA	13420-1_{1..798}	lnc-MRPS6-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPS6-1:4	chr21	 35561069	 35561866	+	lnc-MRPS6-1	lnc-MRPS6-1:4	XLOC_013923	linc-KCNE2-3	NA	NA	NA	inter
CUST_12356_PI429285431	1.4409475	A	2.5981092	A	0.448393820183552	0	lncRNA	13968-1_{1..581}	lnc-ADARB1-3:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADARB1-3:14	chr21	 46720303	 46720883	+	lnc-ADARB1-3	lnc-ADARB1-3:14	XLOC_013981	linc-COL18A1-4	NA	NA	NA	inter
CUST_23547_PI429285431	0.91245997	A	1.0738988	A	0.894132888636974	0	lncRNA	25114-1_{1..553}	lnc-C11orf96-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf96-1:1	chr11	 43954640	 43955192	+	lnc-C11orf96-1	lnc-C11orf96-1:1	ENSG00000254409.1	RP11-613D13.4	C11orf96	NA	chr11:43964106-43964960	inter
CUST_10390_PI429285431	0.91959465	A	1.2122545	A	0.816395508306793	0	lncRNA	11918-1_{1..529}	lnc-NUMA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUMA1-1:1	chr11	 71589418	 71589946	-	lnc-NUMA1-1	lnc-NUMA1-1:1	XLOC_009494	linc-KRTAP5-11	LOC100129216	"hg19_refFlat_LOC100129216:range=chr11:71589499-715956075'pad=0,hg19_refFlat_LOC100129216:range=chr11:71589499-715956075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_DEFB131:range=chr4:9446260-94522405'pad=0,hg19_refFlat_DEFB131:range=chr4:9446260-94522405'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60chr11:71589499-71595607"	NA	inter
CUST_37839_PI429285431	6.581872	P	6.640476	P	0.960192784619345	0	lncRNA	38930-1_{1..252}	n346364|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1914|NULL|-1.4842900|-0.5630275	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346364|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1914|NULL|-1.4842900|-0.5630275	chr1	   741200	   741451	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42377_PI429285431	7.7263136	P	7.923583	P	0.87219982133222	0	lncRNA	45057-1_{1..136}	ENST00000516089 ncrna:snoRNA chromosome:GRCh37:12:6690640:6690775:-1 gene:ENSG00000251898 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516089 ncrna:snoRNA chromosome:GRCh37:12:6690640:6690775:-1 gene:ENSG00000251898 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	  6690640	  6690775	-	ENSG00000251898	ENST00000516089	NA	NA	CHD4	NA	chr12:6680640-6700775	inner
LNCA_21_P0014602	0.90641356	A	0.90071654	A	1.00395668042396	0	lncRNA	ENST00000440689	XR_110487	XR_110487	NA	Hs.659047	LOC100506293	NA	ENST00000440689	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506293 (LOC100506293), miscRNA [XR_110487]"	chr1:111495404-111495463	hs|1p13.3	Agilent_HUMAN_G3V2	ENST00000440689	ENST00000440689	chr1	111495404	111495463	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4499_PI429285431	2.6430838	A	1.5388303	A	2.14987607329082	0	lncRNA	4448-1_{1..848}	"transcript_id ""ENST00000540490.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000540490.1"" | genecode_v17"	chr12	128118641	128119488	-	ENSG00000256022.1	ENST00000540490.1	RP11-526P6.1	RP11-526P6.1-002	NA	NA	NA	inter
CUST_46505_PI429285431	14.397924	P	14.7632475	P	0.776294784487278	0	lncRNA	50699-1_{1..3000}	"gi|296010975|ref|NR_033660.1| Homo sapiens secretory carrier membrane protein 5 (SCAMP5), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|296010975|ref|NR_033660.1| Homo sapiens secretory carrier membrane protein 5 (SCAMP5), transcript variant 4, non-coding RNA"	Chr15	 75287876	 75290875	+	192683	NR_033660.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001902	8.679882	P	8.467079	P	1.15893768816422	0	lncRNA	ENST00000455309	XR_109951	XR_109951	NA	Hs.652640	XLOC_001625	NA	ENST00000455309	THC2634723	NA	"PREDICTED: Homo sapiens hypothetical LOC100507286 (LOC100507286), miscRNA [XR_109951]"	chr2:112268508-112268567	hs|2q13	Agilent_HUMAN_G3V2	ENST00000455309	ENST00000455309	chr2	112268508	112268567	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6372_PI429285431	1.5036552	A	1.1702466	A	1.25998678279665	0	lncRNA	6298-1_{1..603}	"transcript_id ""ENST00000594913.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594913.1"" | genecode_v17"	chr19	 17516924	 17517526	+	ENSG00000269640.1	ENST00000594913.1	CTD-2521M24.9	CTD-2521M24.9-012	FAM125A	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr19:17527840-17535156"	NA	inter
CUST_9164_PI429285431	0.8898516	A	0.88710433	A	1.00190607671391	0	lncRNA	10682-1_{1..3000}	lnc-PLXND1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLXND1-1:1	chr3	129467662	129470661	-	lnc-PLXND1-1	lnc-PLXND1-1:1	ENSG00000248808	ENST00000504471	TMCC1	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr3:129457662-129478530"	NA	inner
CUST_2590_PI429285431	8.72013	P	8.620707	P	1.07134489681664	0	lncRNA	2578-1_{1..821}	"transcript_id ""ENST00000452482.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452482.1"" | genecode_v17"	chr6	100441942	100442762	+	ENSG00000229315.1	ENST00000452482.1	RP11-14I4.3	RP11-14I4.3-004	MCHR2	NA	chr6:100431942-100442114	inner
CUST_34894_PI429285431	9.0075655	P	9.114945	P	0.92827263866913	0	lncRNA	36319-1_{1..2117}	n341809|AX747706|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4288|NULL|-1.0787000|-0.1413717	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341809|AX747706|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4288|NULL|-1.0787000|-0.1413717	chr9	139442078	139444194	+	NA	NA	NA	NA	NOTCH1	NA	chr9:139432078-139440238	inter
CUST_21211_PI429285431	1.2613218	A	1.2859471	A	0.983075892072302	0	lncRNA	22836-1_{1..580}	lnc-PARN-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PARN-1:3	chr16	 14512491	 14513070	-	lnc-PARN-1	lnc-PARN-1:3	ENSG00000263257.1	RP11-65J21.4	NA	NA	NA	inter
LNCA_21_P0009878	1.6073952	A	1.5226728	A	1.06048366595236	0	lncRNA	ENST00000449581	NA	BC038533	NA	NA	XLOC_013647	NA	ENST00000449581	THC2605462	NA	"BROAD Institute lincRNA (XLOC_013647), lincRNA [TCONS_00027998]"	chr20:7127202-7127143	hs|20p12.3	Agilent_HUMAN_G3V2	ENST00000449581	ENST00000449581	chr20	  7127143	  7127202	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18016_PI429285431	0.9632052	A	0.90196216	A	1.04336434648213	0	lncRNA	19749-1_{1..269}	lnc-OTX2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OTX2-3:1	chr14	 57421030	 57421298	-	lnc-OTX2-3	lnc-OTX2-3:1	XLOC_011040	linc-OTX2	NA	NA	NA	inter
CUST_13579_PI429285431	0.906714	A	0.92689484	A	0.98610908921799	0	lncRNA	15220-1_{1..561}	lnc-PAX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAX1-1:1	chr20	 21596021	 21596581	+	lnc-PAX1-1	lnc-PAX1-1:1	XLOC_013480	linc-PAX1-1	NA	NA	NA	inter
CUST_5642_PI429285431	0.9230981	A	1.0592276	A	0.909957140332583	0	lncRNA	5570-1_{1..755}	"transcript_id ""ENST00000561719.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561719.1"" | genecode_v17"	chr16	 80601000	 80601754	-	ENSG00000260737.1	ENST00000561719.1	RP11-18F14.1	RP11-18F14.1-005	NA	NA	NA	inter
CUST_37852_PI429285431	0.9016768	A	0.90740573	A	0.996036882284398	0	lncRNA	38943-1_{1..1904}	n346382|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1932|NULL|-1.3052300|-0.2628595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n346382|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1932|NULL|-1.3052300|-0.2628595	chr4	185544379	185546282	-	NA	NA	NA	NA	CASP3	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-62.30chr4:185548850-185556915"	NA	inter
CUST_40872_PI429285431	4.9078646	P	2.00843	A	7.4613392199765	0	lncRNA	41568-1_{1..3000}	n410673|NR_037923|lncRNA|Homosapiens||RefGeneNoncode|NR_037923||15.5309000|-0.3806068	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410673|NR_037923|lncRNA|Homosapiens||RefGeneNoncode|NR_037923||15.5309000|-0.3806068	chr15	 55647420	 55650419	-	NA	NA	NA	NA	FLJ27352	"hg19_refFlat_PIGB:range=chr15:55611449-556476305'pad=0,hg19_refFlat_PIGB:range=chr15:55611449-556476305'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10chr15:55700723-55710910"	NA	inner
CUST_3115_PI429285431	1.8255005	A	1.1960137	A	1.54701458677628	0	lncRNA	3094-1_{1..555}	"transcript_id ""ENST00000523724.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523724.1"" | genecode_v17"	chr8	 57449317	 57449871	-	ENSG00000253139.1	ENST00000523724.1	RP11-17A4.3	RP11-17A4.3-002	NA	NA	NA	inter
CUST_50711_PI429285431	8.033218	P	7.889368	P	1.10484960531956	0	lncRNA	54382-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00003131 range=chr10:82003045-82009394 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003131 range=chr10:82003045-82009394 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 82003045	 82006044	+	NA	NA	NA	NA	NA	"hg19_refFlat_EIF5A:range=chr17:7210366-72149595'pad=0,hg19_refFlat_EIF5A:range=chr17:7210366-72149595'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_EIF5AL1:range=chr10:81272406-812728705'pad=0,hg19_refFlat_EIF5AL1:range=chr10:81272406-812728705'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.90;hg19_refFlat_EIF5A:range=chr17:7212955-72149595'pad=0,hg19_refFlat_EIF5A:range=chr17:7212955-72149595'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10"	NA	inter
CUST_31455_PI429285431	0.9382317	A	1.1413949	A	0.868643917185612	0	lncRNA	33222-1_{1..1594}	n337928|AK055696|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|313|NULL|0.3578380|-0.2599998	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337928|AK055696|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|313|NULL|0.3578380|-0.2599998	chr22	 18036249	 18037842	+	NA	NA	NA	NA	CECR2	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr22:18026249-18033845"	NA	inter
CUST_10872_PI429285431	0.91121006	A	0.90503347	A	1.00429046374156	0	lncRNA	12411-1_{1..756}	lnc-ZNHIT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNHIT1-1:1	chr7	100944050	100944805	+	lnc-ZNHIT1-1	lnc-ZNHIT1-1:1	XLOC_006194	linc-EMID2	NA	NA	NA	inter
CUST_2301_PI429285431	0.9004291	A	0.90781605	A	0.994892842537443	0	lncRNA	2294-1_{1..794}	"transcript_id ""ENST00000502287.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502287.1"" | genecode_v17"	chr5	107035658	107036451	-	ENSG00000249959.1	ENST00000502287.1	RP11-252I13.2	RP11-252I13.2-002	NA	NA	NA	inter
CUST_21583_PI429285431	3.205272	P	4.049534	P	0.556995663271113	0	lncRNA	23197-1_{1..580}	lnc-BEST4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BEST4-1:1	chr1	 45241228	 45241807	-	lnc-BEST4-1	lnc-BEST4-1:1	ENSG00000225721.1	RP11-269F19.2	KIF2C	"hg19_refFlat_KIF2C:range=chr1:45205605-452328515'pad=0,hg19_refFlat_KIF2C:range=chr1:45205605-452328515'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60chr1:45231228-45233439"	NA	inner
CUST_39467_PI429285431	0.9000501	A	0.9098323	A	0.993242431402012	0	lncRNA	40410-2_{3001..3214}	n387026|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wks.1||2.7779100|-0.2359340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387026|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wks.1||2.7779100|-0.2359340	chr17	 45503842	 45504055	+	NA	NA	NA	NA	C17orf57	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr17:45490842-45514056"	NA	inner
LNCA_21_P0003230	5.210086	P	5.555687	P	0.786980066971656	0	lncRNA	TCONS_00006852	NA	NA	NA	NA	XLOC_002653	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002653), lincRNA [TCONS_00006852]"	chr3:52279180-52279239	hs|3p21.2	Agilent_HUMAN_G3V2	TCONS_00006852	TCONS_00006852	chr3	 52279180	 52279239	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43267_PI429285431	0.90582883	A	5.22963	P	0.049935126285762	0	lncRNA	48085-1_{1..102}	ENST00000520185 havana:sense_intronic chromosome:GRCh37:8:39771748:39773240:1 gene:ENSG00000253838 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000520185 havana:sense_intronic chromosome:GRCh37:8:39771748:39773240:1 gene:ENSG00000253838 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr8	 39771748	 39771849	+	ENSG00000253838	ENST00000520185	NA	NA	IDO1	NA	chr8:39771328-39783240	inner
LNCA_21_P0010224	2.783662	A	3.6466646	P	0.549807083803585	0	lncRNA	TCONS_00028976	NA	NA	NA	NA	XLOC_013884	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013884), lincRNA [TCONS_00028976]"	chr21:25231320-25231379	hs|21q21.2	Agilent_HUMAN_G3V2	TCONS_00028976	TCONS_00028976	chr21	 25231320	 25231379	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36960_PI429285431	5.3828907	P	3.534517	P	3.60094034672211	0	lncRNA	38107-3_{6001..6629}	n345423|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_972|NULL|-1.6194600|-0.2538491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n345423|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_972|NULL|-1.6194600|-0.2538491	chr1	207980865	207981493	-	NA	NA	NA	NA	CD46	NA	chr1:207964865-207968861	inter
CUST_783_PI429285431	0.9013276	A	1.0971416	A	0.87308014606376	0	lncRNA	776-1_{1..368}	"transcript_id ""ENST00000431697.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431697.1"" | genecode_v17"	chr2	 18966073	 18966440	+	ENSG00000224626.1	ENST00000431697.1	AC106053.1	AC106053.1-001	NA	NA	NA	inter
CUST_29408_PI429285431	3.7898064	P	4.078918	P	0.818405871171547	0	lncRNA	31162-1_{1..243}	n332772|AF034833|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063164|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063164|-0.6951970|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332772|AF034833|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063164|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063164|-0.6951970|-1.0000000	chr12	 56079013	 56079255	-	NA	NA	NA	NA	ITGA7	NA	chr12:56078352-56091827	inner
LNCA_21_P0014125	0.9027259	A	0.9147971	A	0.991667788663305	0	lncRNA	ENST00000480669	XR_108510	XR_108510	NA	Hs.686610	LOC100505473	NA	ENST00000480669	THC2748065	NA	"PREDICTED: Homo sapiens hypothetical LOC100505473 (LOC100505473), miscRNA [XR_108510]"	chr3:169194739-169194798	hs|3q26.2	Agilent_HUMAN_G3V2	ENST00000480669	ENST00000480669	chr3	169194739	169194798	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32742_PI429285431	4.7031593	P	5.238914	P	0.689797736564806	0	lncRNA	34380-2_{3001..6000}	n339368|D87433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1800|NULL|17.7564000|-0.0912541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339368|D87433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1800|NULL|17.7564000|-0.0912541	chr3	 52532370	 52535369	+	NA	NA	NA	NA	NT5DC2	NA	chr3:52558385-52568509	inner
CUST_35320_PI429285431	0.9130852	A	0.9249599	A	0.991802866407413	0	lncRNA	36728-1_{1..997}	n342353|BC038574|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4845|NULL|0.1540620|-0.3853887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342353|BC038574|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4845|NULL|0.1540620|-0.3853887	chr19	 23521417	 23522413	-	NA	NA	NA	NA	ZNF91	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90chr19:23540498-23551782"	NA	inner
CUST_24457_PI429285431	3.9964514	P	4.1383896	P	0.906300760184501	0	lncRNA	26010-1_{1..1939}	lnc-C10orf116-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf116-1:2	chr10	 88768112	 88770050	+	lnc-C10orf116-1	lnc-C10orf116-1:2	ENSG00000151303.10	AGAP11	AGAP11	NA	chr10:88758112-88769960	inner
CUST_18541_PI429285431	1.094129	A	0.9014673	A	1.14287031039856	0	lncRNA	20253-1_{1..385}	lnc-SLC25A47-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A47-2:1	chr14	100820128	100820512	+	lnc-SLC25A47-2	lnc-SLC25A47-2:1	ENSG00000258666	RP11-638I2.8	WARS	"hg19_refFlat_WARS:range=chr14:100801212-1008355225'pad=0,hg19_refFlat_WARS:range=chr14:100801212-1008355225'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_WARS:range=chr14:100801212-1008282345'pad=0,hg19_refFlat_WARS:range=chr14:100801212-1008282345'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50chr14:100810128-100830398"	NA	inner
CUST_51017_PI429285431	0.8871014	A	1.797411	A	0.532070897428447	0	lncRNA	54663-1_{1..1127}	hg19_lincRNAsTranscripts_TCONS_l2_00007040 range=chr13:114944727-114988540 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007040 range=chr13:114944727-114988540 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	114944727	114945853	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49669_PI429285431	1.5115838	A	1.174442	A	1.26325141854089	0	lncRNA	53448-2_{3001..3707}	hg19_lincRNAsTranscripts_TCONS_l2_00027515 range=chr7:149244245-149321881 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027515 range=chr7:149244245-149321881 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	149247245	149247951	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3041_PI429285431	0.9208611	A	1.0705236	A	0.901461323259725	0	lncRNA	3020-1_{1..630}	"transcript_id ""ENST00000521021.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521021.1"" | genecode_v17"	chr8	 23316114	 23316743	+	ENSG00000253390.1	ENST00000521021.1	CTC-756D1.2	CTC-756D1.2-001	ENTPD4	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20chr8:23306114-23315244"	NA	inter
CUST_15293_PI429285431	5.6749086	P	5.8929625	P	0.859724365796451	0	lncRNA	16970-1_{1..335}	lnc-SERPINB6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERPINB6-2:2	chr6	  3053804	  3054138	-	lnc-SERPINB6-2	lnc-SERPINB6-2:2	XLOC_005582	linc-SERPINB6-2	NA	NA	NA	inter
CUST_36512_PI429285431	0.90253663	A	1.1892786	A	0.819751209299105	0	lncRNA	37712-1_{1..1291}	n345013|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_562|NULL|-1.4030000|-0.2944932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345013|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_562|NULL|-1.4030000|-0.2944932	chr8	 95964727	 95966017	+	NA	NA	NA	NA	TP53INP1	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60chr8:95954727-95961615"	NA	inter
CUST_38710_PI429285431	2.0931225	A	2.5131135	A	0.747429287009452	0	lncRNA	39704-1_{1..1883}	n384141|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003amw.1||0.2208000|-0.2397984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384141|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003amw.1||0.2208000|-0.2397984	chr22	 32896531	 32898413	-	NA	NA	NA	NA	FBXO7	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20chr22:32886531-32894818"	NA	inter
CUST_47784_PI429285431	1.7378803	A	1.1851612	A	1.46684771371418	0	lncRNA	51707-3_{6001..6649}	"gi|385137065|ref|NR_047603.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 33, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137065|ref|NR_047603.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 33, non-coding RNA"	ChrY	 15366259	 15366907	-	7404	NR_047603.1	NA	NA	NA	NA	NA	inter
CUST_14966_PI429285431	1.7581999	A	1.4654405	A	1.22498102329926	0	lncRNA	16629-1_{1..563}	lnc-SIK1-4:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIK1-4:8	chr21	 44897944	 44898506	-	lnc-SIK1-4	lnc-SIK1-4:8	XLOC_014105	linc-SIK1-2	NA	NA	NA	inter
LNCA_21_P0006059	0.89464843	A	0.8932619	A	1.0009615313354	0	lncRNA	ENST00000444708	NA	NA	NA	NA	XLOC_007592	NA	ENST00000444708	NA	NA	"BROAD Institute lincRNA (XLOC_007592), lincRNA [TCONS_00015769]"	chr9:134696107-134696166	hs|9q34.13	Agilent_HUMAN_G3V2	ENST00000444708	ENST00000444708	chr9	134696107	134696166	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16376_PI429285431	1.3754255	A	1.0718895	A	1.23416561035218	0	lncRNA	18074-1_{1..497}	lnc-ST6GALNAC5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ST6GALNAC5-1:1	chr1	 77544025	 77544521	+	lnc-ST6GALNAC5-1	lnc-ST6GALNAC5-1:1	XLOC_000262	linc-AK5-2	LOC256483	NA	chr1:77534025-77544260	inter
CUST_42296_PI429285431	0.8837873	A	1.0812379	A	0.872090281423491	0	lncRNA	44911-1_{1..72}	ENST00000516750 ncrna:snoRNA chromosome:GRCh37:8:110608472:110608543:-1 gene:ENSG00000252559 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516750 ncrna:snoRNA chromosome:GRCh37:8:110608472:110608543:-1 gene:ENSG00000252559 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	110608472	110608543	-	ENSG00000252559	ENST00000516750	NA	NA	SYBU	NA	chr8:110598472-110618543	inner
CUST_6004_PI429285431	2.510815	A	2.339589	A	1.12601496398754	0	lncRNA	5929-1_{1..1540}	"transcript_id ""ENST00000574526.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000574526.1"" | genecode_v17"	chr17	 77893156	 77894695	+	ENSG00000262188.1	ENST00000574526.1	RP11-353N14.4	RP11-353N14.4-001	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70"	NA	inter
CUST_51324_PI429285431	6.4276624	P	6.321201	P	1.07658438091219	0	lncRNA	54928-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00009081 range=chr15:45115622-45124567 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009081 range=chr15:45115622-45124567 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 45115622	 45118621	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15207_PI429285431	1.6983209	A	1.0941794	A	1.52007393843789	0	lncRNA	16875-1_{1..1289}	lnc-FXYD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FXYD4-1:1	chr10	 43822819	 43824107	+	lnc-FXYD4-1	lnc-FXYD4-1:1	XLOC_008466	linc-FXYD4	NA	NA	NA	inter
CUST_14951_PI429285431	0.8938138	A	0.8972915	A	0.997592345111847	0	lncRNA	16615-1_{1..949}	lnc-C9orf102-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf102-6:1	chr9	 98315220	 98316168	+	lnc-C9orf102-6	lnc-C9orf102-6:1	XLOC_007474	linc-C9orf102-3	NA	NA	NA	inter
CUST_19998_PI429285431	1.1134273	A	1.8731012	A	0.59062981881336	0	lncRNA	21651-1_{1..476}	lnc-PDZD8-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PDZD8-2:6	chr10	119235868	119236343	-	lnc-PDZD8-2	lnc-PDZD8-2:6	ENSG00000229847.2	EMX2OS	NA	NA	NA	inter
CUST_51178_PI429285431	1.4256212	A	1.5248225	A	0.933549677148509	0	lncRNA	54799-1_{1..1204}	hg19_lincRNAsTranscripts_TCONS_l2_00008202 range=chr14:94830363-94833021 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008202 range=chr14:94830363-94833021 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr14	 94830363	 94831566	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22267_PI429285431	5.177488	P	5.8988867	P	0.606509143440592	0	lncRNA	23868-1_{1..843}	lnc-AC108463.1-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC108463.1-3:10	chr2	112252462	112253304	-	lnc-AC108463.1-3	lnc-AC108463.1-3:10	ENSG00000172965.6	AC068491.1	NA	NA	NA	inter
CUST_42853_PI429285431	3.1508214	P	3.5322149	P	0.767695714664034	0	lncRNA	45897-1_{1..108}	ENST00000517031 ncrna:snoRNA chromosome:GRCh37:1:151500307:151500414:-1 gene:ENSG00000252840 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517031 ncrna:snoRNA chromosome:GRCh37:1:151500307:151500414:-1 gene:ENSG00000252840 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	151500307	151500414	-	ENSG00000252840	ENST00000517031	NA	NA	CGN	NA	chr1:151490307-151510414	inner
CUST_8010_PI429285431	1.8178568	A	1.673888	A	1.10494058888416	0	lncRNA	9621-1_{1..436}	lnc-PLEKHA3-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLEKHA3-1:7	chr2	179447299	179447734	+	lnc-PLEKHA3-1	lnc-PLEKHA3-1:7	ENSG00000237298	AC009948.3	TTN	"hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30chr2:179437299-179457390"	NA	inter
CUST_36417_PI429285431	0.8988462	A	0.89886916	A	0.999984085467372	0	lncRNA	37635-1_{1..3000}	n344934|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_483|NULL|-1.2951200|-0.3220261	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n344934|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_483|NULL|-1.2951200|-0.3220261	chr6	167391322	167394321	-	NA	NA	NA	NA	FGFR1OP	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.82;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10chr6:167412816-167421574"	NA	inter
LNCA_19_P00801649	4.7326455	P	4.7772875	P	0.969530372840751	0	lncRNA	XR_132670	XR_132670	XR_132670	NA	NA	LOC100652730	uncharacterized LOC100652730	ENST00000412500	THC2635964	NA	"PREDICTED: Homo sapiens hypothetical LOC100652730 (LOC100652730), miscRNA [XR_132670]"	chr20:61405620-61405561	hs|20q13.33	Agilent_HUMAN_G3V2	XR_132670	XR_132670	chr20	 61405561	 61405620	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001685	1.8524024	A	2.4379897	A	0.666378010604089	0	lncRNA	ENST00000230113	NA	NA	NA	NA	XLOC_000236	NA	ENST00000230113	NA	NA	"BROAD Institute lincRNA (XLOC_000236), lincRNA [TCONS_00000219]"	chr1:67996047-67997833	hs|1p31.3	Agilent_HUMAN_G3V2	ENST00000230113	ENST00000230113	chr1	 67996047	 67997833	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29848_PI429285431	3.9564314	P	3.7220912	P	1.17636861550674	0	lncRNA	31611-1_{1..349}	n333745|L07251|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191812|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191812|1.1035500|-0.3481074	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333745|L07251|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191812|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191812|1.1035500|-0.3481074	chr4	145035828	145036176	-	NA	NA	NA	NA	GYPA	NA	chr4:145030456-145061904	inner
CUST_37442_PI429285431	0.9110405	A	0.9131662	A	0.998527661992965	0	lncRNA	38541-2_{3001..4185}	n345890|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1439|NULL|-1.3147000|-0.2975421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345890|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1439|NULL|-1.3147000|-0.2975421	chrX	124521694	124522878	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12228_PI429285431	0.8912615	A	0.89482546	A	0.997532699974981	0	lncRNA	13832-1_{1..303}	lnc-ELAVL2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELAVL2-3:1	chr9	 23438560	 23438862	-	lnc-ELAVL2-3	lnc-ELAVL2-3:1	XLOC_007658	linc-CDKN2B-2	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.30"	NA	inter
CUST_41299_PI429285431	1.2016431	A	1.299893	A	0.934165519070372	0	lncRNA	42296-1_{1..107}	ENST00000390184 ncrna:miRNA chromosome:GRCh37:7:88269835:88269941:1 gene:ENSG00000211518 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390184 ncrna:miRNA chromosome:GRCh37:7:88269835:88269941:1 gene:ENSG00000211518 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 88269835	 88269941	+	ENSG00000211518	ENST00000390184	NA	NA	NA	NA	NA	inter
LNCA_21_P0006648	1.0943115	A	2.062483	A	0.511153498453233	0	lncRNA	ENST00000413941	NA	NA	NA	NA	XLOC_008383	NA	ENST00000413941	NA	NA	"BROAD Institute lincRNA (XLOC_008383), lincRNA [TCONS_00017783]"	chr10:8343568-8343627	hs|10p14	Agilent_HUMAN_G3V2	ENST00000413941	ENST00000413941	chr10	  8343568	  8343627	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11907_PI429285431	0.9095796	A	0.9105562	A	0.999323301527221	0	lncRNA	13489-1_{1..3000}	lnc-HK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-HK2-1:1	chr2	 75165435	 75168434	+	lnc-HK2-1	lnc-HK2-1:1	XLOC_001537	linc-POLE4	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-13.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80"	NA	inter
CUST_12414_PI429285431	6.0781946	P	5.978491	P	1.07155329055629	0	lncRNA	14027-1_{1..260}	lnc-NDEL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDEL1-1:1	chr17	  8594458	  8594717	+	lnc-NDEL1-1	lnc-NDEL1-1:1	XLOC_012102	linc-NTN1-4	NA	NA	NA	inter
CUST_31254_PI429285431	9.064518	P	9.208634	P	0.904933698697585	0	lncRNA	33045-1_{1..2980}	n337710|AB021262|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|92|NULL|2.3118000|-0.1581741	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337710|AB021262|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|92|NULL|2.3118000|-0.1581741	chr1	  9908333	  9911312	-	NA	NA	NA	NA	CTNNBIP1	NA	chr1:9908334-9970316	inner
CUST_1479_PI429285431	0.89434654	A	0.8961258	A	0.998767471135918	0	lncRNA	1466-1_{1..799}	"transcript_id ""ENST00000495382.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000495382.1"" | genecode_v17"	chr3	145657699	145658497	+	ENSG00000244358.1	ENST00000495382.1	RP11-88H10.2	RP11-88H10.2-001	NA	NA	NA	inter
CUST_28164_PI429285431	0.93763256	A	0.89226913	A	1.03194310384357	0	lncRNA	29792-1_{1..3000}	n325444|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323302|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323302|-0.9757700|-0.2673879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325444|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323302|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323302|-0.9757700|-0.2673879	chr2	  8617413	  8620412	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17663_PI429285431	1.1916863	A	1.9246321	A	0.601674116615647	0	lncRNA	19392-1_{1..3000}	lnc-RAD23B-11:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAD23B-11:1	chr9	110769546	110772545	+	lnc-RAD23B-11	lnc-RAD23B-11:1	XLOC_007512	linc-ACTL7A-4	NA	NA	NA	inter
CUST_14164_PI429285431	1.4243077	A	1.8249109	A	0.757541484104842	0	lncRNA	15815-1_{1..389}	lnc-SLC17A6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC17A6-2:1	chr11	 22531662	 22532050	+	lnc-SLC17A6-2	lnc-SLC17A6-2:1	XLOC_009089	linc-GAS2-1	NA	NA	NA	inter
CUST_3581_PI429285431	0.8946238	A	0.90993756	A	0.989441447448301	0	lncRNA	3551-1_{1..196}	"transcript_id ""ENST00000436003.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436003.2"" | genecode_v17"	chr10	  2211341	  2211536	-	ENSG00000231326.2	ENST00000436003.2	RP11-69C17.4	RP11-69C17.4-002	NA	NA	NA	inter
CUST_25092_PI429285431	1.4746702	A	1.3342286	A	1.10224245382108	0	lncRNA	26629-1_{1..686}	lnc-SLC38A8-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC38A8-4:2	chr16	 83806414	 83807099	-	lnc-SLC38A8-4	lnc-SLC38A8-4:2	ENSG00000260788.1	RP11-298D21.1	CDH13	NA	chr16:83796414-83816522	inner
CUST_44483_PI429285431	12.421402	P	12.583975	P	0.893430245210041	0	lncRNA	49086-1_{1..1153}	"gi|195539376|ref|NR_003263.2| Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3 (SDHAP3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|195539376|ref|NR_003263.2| Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3 (SDHAP3), non-coding RNA"	Chr5	  1572072	  1573224	-	728609	NR_003263.2	NA	NA	NA	NA	NA	inter
CUST_25630_PI429285431	1.8341935	A	1.6382176	A	1.14549876243831	0	lncRNA	27160-1_{1..1004}	lnc-TMPRSS2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMPRSS2-4:1	chr21	 42558375	 42559378	-	lnc-TMPRSS2-4	lnc-TMPRSS2-4:1	ENSG00000225745.4	AL773572.7	BACE2	NA	chr21:42548375-42568715	inner
CUST_19313_PI429285431	5.0239882	P	5.843797	P	0.566517018026557	0	lncRNA	20979-1_{1..701}	lnc-GS1-211B7.1.1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GS1-211B7.1.1-1:9	chr8	 30623743	 30624443	+	lnc-GS1-211B7.1.1-1	lnc-GS1-211B7.1.1-1:9	ENSG00000104691.10	UBXN8	UBXN8	NA	chr8:30613743-30624522	inner
CUST_40094_PI429285431	4.1839285	P	4.9372535	P	0.5932347441026	0	lncRNA	40939-1_{1..1462}	n407454|NR_026910|lncRNA|Homosapiens||RefGeneNoncode|NR_026910||3.0653700|-0.1306765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407454|NR_026910|lncRNA|Homosapiens||RefGeneNoncode|NR_026910||3.0653700|-0.1306765	chr7	 73150426	 73151887	-	NA	NA	NA	NA	ABHD11	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chr7:73150424-73153190"	NA	inner
CUST_44403_PI429285431	1.1868087	A	1.0109646	A	1.12962513882315	0	lncRNA	49018-1_{1..638}	"gi|397139070|ref|XR_109821.2| PREDICTED: Homo sapiens uncharacterized LOC100507012, transcript variant 1 (LOC100507012), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139070|ref|XR_109821.2| PREDICTED: Homo sapiens uncharacterized LOC100507012, transcript variant 1 (LOC100507012), misc_RNA"	Chr4	 95664825	 95665462	-	100507012	XR_109821.3	NA	NA	NA	NA	NA	inter
CUST_34560_PI429285431	0.92277956	A	1.0603511	A	0.909048050763051	0	lncRNA	36019-1_{1..1341}	n341440|BC043518|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3910|NULL|-0.7425700|-0.1783084	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341440|BC043518|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3910|NULL|-0.7425700|-0.1783084	chr13	111766158	111767498	-	NA	NA	NA	NA	ARHGEF7	"hg19_refFlat_ARHGEF7:range=chr13:111767874-1119446795'pad=0,hg19_refFlat_ARHGEF7:range=chr13:111767874-1119446795'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10chr13:111767624-111778025"	NA	inner
CUST_5012_PI429285431	1.1328017	A	1.8781376	A	0.596528966617473	0	lncRNA	4952-2_{3001..3382}	"transcript_id ""ENST00000398460.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000398460.3"" | genecode_v17"	chr14	101326582	101326963	+	ENSG00000214548.9	ENST00000398460.3	MEG3	MEG3-028	NA	NA	NA	inter
CUST_49593_PI429285431	1.4879701	A	2.0439227	A	0.680207774182233	0	lncRNA	53382-1_{1..659}	hg19_lincRNAsTranscripts_TCONS_l2_00024973 range=chr6:147373734-147430092 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024973 range=chr6:147373734-147430092 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	147373734	147374392	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12464_PI429285431	4.685735	P	5.07695	P	0.762487187254233	0	lncRNA	14076-1_{1..842}	lnc-GATA3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GATA3-1:3	chr10	  8094951	  8095792	+	lnc-GATA3-1	lnc-GATA3-1:3	XLOC_008381	linc-GATA3-1	GATA3	NA	chr10:8096667-8105448	inter
CUST_24003_PI429285431	0.9046002	A	0.91962516	A	0.9896395345594	0	lncRNA	25557-1_{1..1847}	lnc-TAS2R1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TAS2R1-2:1	chr5	  9903637	  9905483	-	lnc-TAS2R1-2	lnc-TAS2R1-2:1	ENSG00000249781.1	CTD-2143L24.1	NA	NA	NA	inter
CUST_26828_PI429285431	0.90453553	A	0.9176898	A	0.990923596339339	0	lncRNA	28343-1_{1..594}	n323900|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056135|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056135|-0.9621960|-0.2857628	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323900|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056135|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056135|-0.9621960|-0.2857628	chrX	 27086942	 27087535	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_698_PI429285431	0.89503694	A	0.9298874	A	0.976132934863627	0	lncRNA	691-1_{1..825}	"transcript_id ""ENST00000588108.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588108.1"" | genecode_v17"	chr2	  6773970	  6774794	-	ENSG00000236172.2	ENST00000588108.1	AC097517.2	AC097517.2-036	NA	NA	NA	inter
LNCA_21_P0008640	0.91346157	A	0.92449933	A	0.992378400590301	0	lncRNA	XR_109203	XR_109203	XR_109203	NA	NA	LOC100506530	uncharacterized LOC100506530	NA	THC2642697	NA	"PREDICTED: Homo sapiens hypothetical LOC100506530 (LOC100506530), miscRNA [XR_109203]"	chr15:62023513-62023572	hs|15q22.2	Agilent_HUMAN_G3V2	XR_109203	XR_109203	chr15	 62023513	 62023572	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44442_PI429285431	0.89291203	A	0.9000323	A	0.995076763975485	0	lncRNA	49052-1_{1..439}	"gi|397139078|ref|XR_109853.2| PREDICTED: Homo sapiens uncharacterized LOC100505784 (LOC100505784), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139078|ref|XR_109853.2| PREDICTED: Homo sapiens uncharacterized LOC100505784 (LOC100505784), misc_RNA"	Chr4	157563690	157564128	+	100505784	XR_109853.3	NA	NA	NA	NA	NA	inter
CUST_25468_PI429285431	0.8939611	A	0.90107137	A	0.995083661345923	0	lncRNA	26998-1_{1..474}	lnc-SLC25A48-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A48-3:1	chr5	134970459	134970932	+	lnc-SLC25A48-3	lnc-SLC25A48-3:1	ENSG00000250167.1	CTC-321K16.1	NA	NA	NA	inter
LNCA_21_P0013735	0.91348994	A	0.92344904	A	0.993120649729984	0	lncRNA	ENST00000433644	NA	NA	NA	NA	XLOC_l2_015295	NA	ENST00000433644	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015295), lincRNA [TCONS_l2_00030014]"	chr9:98177945-98177886	hs|9q22.32	Agilent_HUMAN_G3V2	ENST00000433644	ENST00000433644	chr9	 98177886	 98177945	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_879_PI429285431	1.0855317	A	1.5702665	A	0.714628422675129	0	lncRNA	869-1_{1..489}	"transcript_id ""ENST00000421575.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421575.1"" | genecode_v17"	chr2	 52949815	 52950303	-	ENSG00000228033.1	ENST00000421575.1	AC010967.2	AC010967.2-001	NA	NA	NA	inter
CUST_29625_PI429285431	8.336903	P	8.538846	P	0.869378908041204	0	lncRNA	31386-1_{1..238}	n333186|AF433652|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079619|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079619|0.1469620|-0.1013790	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333186|AF433652|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079619|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079619|0.1469620|-0.1013790	chr19	 45926514	 45926751	-	NA	NA	NA	NA	ERCC1	NA	chr19:45916514-45927177	inner
CUST_23796_PI429285431	1.20133	A	1.6397443	A	0.737945256024115	0	lncRNA	25361-1_{1..725}	lnc-SCAF11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SCAF11-1:1	chr12	 46004322	 46005046	-	lnc-SCAF11-1	lnc-SCAF11-1:1	ENSG00000257657.1	RP11-352M15.1	NA	NA	NA	inter
LNCA_21_P0005254	0.9119005	A	0.9188261	A	0.99521104367977	0	lncRNA	ENST00000421825	NA	NA	NA	NA	XLOC_006219	NA	ENST00000421825	NA	NA	"BROAD Institute lincRNA (XLOC_006219), lincRNA [TCONS_00013067]"	chr7:119826059-119826118	hs|7q31.31	Agilent_HUMAN_G3V2	ENST00000421825	ENST00000421825	chr7	119826059	119826118	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26805_PI429285431	0.9056817	A	0.9174266	A	0.991892103425498	0	lncRNA	28317-1_{1..586}	n323873|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056581|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056581|-1.0481500|-0.3463616	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323873|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056581|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056581|-1.0481500|-0.3463616	chrX	 51156102	 51156687	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32412_PI429285431	0.9018331	A	0.90439785	A	0.998223830028842	0	lncRNA	34088-1_{1..2361}	n339006|AK023396|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1435|NULL|-1.2180400|-0.3453010	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339006|AK023396|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1435|NULL|-1.2180400|-0.3453010	chr2	172175162	172177522	-	NA	NA	NA	NA	METTL8	NA	chr2:172173912-172187521	inner
CUST_15554_PI429285431	0.89140356	A	1.6038487	A	0.61028492537158	0	lncRNA	17239-1_{1..407}	lnc-RP11-181C3.1.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-181C3.1.1-1:4	chr12	 98897538	 98897944	-	lnc-RP11-181C3.1.1-1	lnc-RP11-181C3.1.1-1:4	XLOC_010167	linc-CDK17-4	NA	NA	NA	inter
CUST_17295_PI429285431	1.2859471	A	0.93144286	A	1.27854615302538	0	lncRNA	19014-1_{1..356}	lnc-ELOVL5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELOVL5-1:1	chr6	 53247481	 53247836	-	lnc-ELOVL5-1	lnc-ELOVL5-1:1	XLOC_005746	linc-ELOVL5-1	NA	NA	NA	inter
CUST_18373_PI429285431	1.5563521	A	1.9366803	A	0.768262797963962	0	lncRNA	20101-1_{1..1251}	lnc-SPRYD7-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPRYD7-1:7	chr13	 50655959	 50657209	-	lnc-SPRYD7-1	lnc-SPRYD7-1:7	ENSG00000231607	DLEU2	NA	NA	NA	inter
LNCA_19_P00322454	0.90819806	A	1.2828513	A	0.771290774573308	0	lncRNA	TCONS_l2_00020232	NA	NA	NA	NA	XLOC_l2_010405	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010405), lincRNA [TCONS_l2_00020232]"	chr3:156470971-156470912	hs|3q25.31	Agilent_HUMAN_G3V2	TCONS_l2_00020232	TCONS_l2_00020232	chr3	156470912	156470971	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30984_PI429285431	1.3297056	A	0.8928717	A	1.3536304242456	0	lncRNA	32772-1_{1..655}	n337146|AF399503|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383922|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383922|3.4035900|-0.1618679	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337146|AF399503|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383922|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383922|3.4035900|-0.1618679	chr11	  5344677	  5345331	-	NA	NA	NA	NA	OR51B2	NA	chr11:5344528-5345582	inner
LNCA_21_P0010323	4.225937	P	4.7081847	P	0.715861451965889	0	lncRNA	TCONS_00029302	NA	NA	NA	NA	XLOC_014105	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014105), lincRNA [TCONS_00029302]"	chr21:44880558-44880499	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029302	TCONS_00029302	chr21	 44880499	 44880558	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1513_PI429285431	1.3196989	A	1.8765514	A	0.67978361794013	0	lncRNA	1500-1_{1..2018}	"transcript_id ""ENST00000471357.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000471357.1"" | genecode_v17"	chr3	156799456	156801473	-	ENSG00000243629.1	ENST00000471357.1	RP11-6F2.4	RP11-6F2.4-001	NA	NA	NA	inter
CUST_32000_PI429285431	0.88850474	A	0.8930643	A	0.996844542794211	0	lncRNA	33722-1_{1..2280}	n338560|BC041826|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|965|NULL|-0.8742260|-0.2435510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338560|BC041826|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|965|NULL|-0.8742260|-0.2435510	chr1	232310680	232312959	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25777_PI429285431	0.89920235	A	0.89961267	A	0.999715628290174	0	lncRNA	27302-1_{1..960}	lnc-GADD45A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GADD45A-2:1	chr1	 68948444	 68949403	+	lnc-GADD45A-2	lnc-GADD45A-2:1	ENSG00000233589.1	RP4-694A7.2	DEPDC1	"hg19_refFlat_DEPDC1:range=chr1:68942615-689626825'pad=0,hg19_refFlat_DEPDC1:range=chr1:68942615-689626825'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80chr1:68939835-68959222"	NA	inner
CUST_37156_PI429285431	8.823543	P	7.2860885	P	2.90281876228625	0	lncRNA	38274-1_{1..2640}	n345593|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1142|NULL|-1.5197200|-0.3788230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345593|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1142|NULL|-1.5197200|-0.3788230	chr3	112315702	112318341	-	NA	NA	NA	NA	CCDC80	NA	chr3:112323407-112328342	inter
CUST_15351_PI429285431	2.636527	A	3.0287337	A	0.761963238192047	0	lncRNA	17033-1_{1..646}	lnc-TP53I13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TP53I13-1:1	chr17	 27895296	 27895941	+	lnc-TP53I13-1	lnc-TP53I13-1:1	XLOC_012161	linc-TP53I13	GIT1	NA	chr17:27900487-27905678	inter
CUST_39312_PI429285431	0.892	A	0.89360535	A	0.99888787504353	0	lncRNA	40279-1_{1..483}	n386339|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010hov.1||-1.0678700|-0.3223483	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386339|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010hov.1||-1.0678700|-0.3223483	chr3	 94657106	 94657588	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39288_PI429285431	1.3809466	A	0.8965072	A	1.39904212253587	0	lncRNA	40259-1_{1..558}	n386277|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gei.1||3.0173700|-0.2039290	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386277|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gei.1||3.0173700|-0.2039290	chr20	 31786003	 31786560	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36448_PI429285431	1.1688508	A	1.0969831	A	1.05107651740719	0	lncRNA	37661-1_{1..831}	n344961|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_510|NULL|-1.3531000|-0.2226306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344961|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_510|NULL|-1.3531000|-0.2226306	chr7	 95306192	 95307022	+	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60"	NA	inter
LNCA_33_P3441639	6.131897	P	9.514647	P	0.0958717781033894	0	lncRNA	XR_109210	XR_109210	XR_109210	   145694	Hs.147229	LOC145694	uncharacterized LOC145694	NA	THC2630265	NA	"PREDICTED: Homo sapiens hypothetical LOC145694 (LOC145694), miscRNA [XR_109210]"	chr15:69689302-69689243	hs|15q23	Agilent_HUMAN_G3V2	XR_109210	XR_109210	chr15	 69689243	 69689302	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42533_PI429285431	7.7081747	P	7.7511187	P	0.970672146883364	0	lncRNA	45329-1_{1..75}	ENST00000364969 ncrna:snoRNA chromosome:GRCh37:14:101419686:101419760:1 gene:ENSG00000201839 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364969 ncrna:snoRNA chromosome:GRCh37:14:101419686:101419760:1 gene:ENSG00000201839 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101419686	101419760	+	ENSG00000201839	ENST00000364969	NA	NA	NA	NA	NA	inter
CUST_15491_PI429285431	2.5397415	A	1.4012865	A	2.20145140733468	0	lncRNA	17180-1_{1..766}	lnc-SLC25A28-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A28-2:1	chr10	101290769	101291534	-	lnc-SLC25A28-2	lnc-SLC25A28-2:1	XLOC_008918	linc-GOT1	NKX2-3	NA	chr10:101292690-101296281	inter
CUST_38467_PI429285431	5.2531915	P	5.2663274	P	0.990936213962497	0	lncRNA	39486-1_{1..2543}	n382927|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002diz.1||6.2450800|-0.3358458	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382927|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002diz.1||6.2450800|-0.3358458	chr16	 21458833	 21461375	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_465_PI429285431	1.2080212	A	0.8850641	A	1.25089188302162	0	lncRNA	456-1_{1..853}	"transcript_id ""ENST00000412932.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412932.1"" | genecode_v17"	chr1	159436111	159436963	+	ENSG00000224943.1	ENST00000412932.1	RP11-180D21.3	RP11-180D21.3-001	NA	NA	NA	inter
CUST_97_PI429285431	5.3145523	P	5.270497	P	1.03100783763911	0	lncRNA	89-1_{1..747}	"transcript_id ""ENST00000392196.5"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000392196.5"" | genecode_v17"	chr19	  7967148	  7967894	-	ENSG00000264166.1	ENST00000392196.5	RN7SL115P	RN7SL115P-201	LRRC8E	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-24.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_U2AF1L4:range=chr19:36233620-362362925'pad=0,hg19_refFlat_U2AF1L4:range=chr19:36233620-362362925'pad=0 3'pad=0 strand=- repeatMasking=none,-100.60;hg19_refFlat_U2AF1L4:range=chr19:36233499-362362925'pad=0,hg19_refFlat_U2AF1L4:range=chr19:36233499-362362925'pad=0 3'pad=0 strand=- repeatMasking=none,-100.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70chr19:7957148-7966908"	NA	inter
CUST_36092_PI429285431	0.8821562	A	0.8839618	A	0.998749236308535	0	lncRNA	37393-1_{1..3000}	n344678|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_227|NULL|-1.3041500|-0.3744234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n344678|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_227|NULL|-1.3041500|-0.3744234	chr6	 72083204	 72086203	-	NA	NA	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-22.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.50"	NA	inter
CUST_24661_PI429285431	10.445365	P	10.41562	P	1.02083167517776	0	lncRNA	26210-1_{1..3000}	lnc-SPNS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPNS1-1:1	chr16	 29001510	 29004509	+	lnc-SPNS1-1	lnc-SPNS1-1:1	ENSG00000261067.1	RP11-264B17.3	LAT	NA	chr16:28996147-29002104	inner
CUST_41283_PI429285431	0.89917856	A	0.9106381	A	0.992088315595943	0	lncRNA	42266-1_{1..79}	ENST00000577799 ncrna:miRNA chromosome:GRCh37:3:5291862:5291940:-1 gene:ENSG00000265180 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577799 ncrna:miRNA chromosome:GRCh37:3:5291862:5291940:-1 gene:ENSG00000265180 gene_biotype:miRNA transcript_biotype:miRNA	chr3	  5291862	  5291940	-	ENSG00000265180	ENST00000577799	NA	NA	NA	NA	NA	inter
CUST_24086_PI429285431	0.8855534	A	2.3414216	A	0.364535645992492	0	lncRNA	25636-1_{1..1041}	lnc-NOM1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-NOM1-5:1	chr7	156808583	156809623	+	lnc-NOM1-5	lnc-NOM1-5:1	ENSG00000243479.3	RP5-1121A15.1	MNX1	NA	chr7:156798583-156803347	inter
CUST_22144_PI429285431	5.1049967	P	5.5944166	P	0.712311456869862	0	lncRNA	23745-1_{1..452}	lnc-PRDM4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRDM4-1:1	chr12	108228750	108229201	-	lnc-PRDM4-1	lnc-PRDM4-1:1	ENSG00000257141.1	RP11-554D14.7	NA	NA	NA	inter
CUST_11824_PI429285431	2.0032	A	1.4292495	A	1.48859417945483	0	lncRNA	13406-1_{1..1048}	lnc-TARBP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TARBP2-3:1	chr12	 54090166	 54091213	+	lnc-TARBP2-3	lnc-TARBP2-3:1	XLOC_009762	linc-HOXC13-3	NA	NA	NA	inter
CUST_51769_PI429285431	2.7818222	A	3.1831632	A	0.757154173411977	0	lncRNA	55320-1_{1..2331}	hg19_lincRNAsTranscripts_TCONS_l2_00012263 range=chr19:7852379-7855979 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012263 range=chr19:7852379-7855979 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	  7852379	  7854709	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-60.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-61.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60"	NA	inter
CUST_36072_PI429285431	1.1704556	A	2.3069282	A	0.454870380575047	0	lncRNA	37378-1_{1..2286}	n344661|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_210|NULL|-1.3160000|-0.2553460	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344661|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_210|NULL|-1.3160000|-0.2553460	chrX	 56808144	 56810429	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24299_PI429285431	0.9086105	A	0.89407134	A	1.01012872958055	0	lncRNA	25850-1_{1..650}	lnc-NENF-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-NENF-2:1	chr1	212472626	212473275	+	lnc-NENF-2	lnc-NENF-2:1	ENSG00000230063.1	RP11-384C4.6	PPP2R5A	NA	chr1:212462626-212482921	inner
CUST_46762_PI429285431	13.12288	P	12.854033	P	1.20484453262676	0	lncRNA	50912-1_{1..1015}	"gi|224548965|ref|NR_027167.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 11, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224548965|ref|NR_027167.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 11, non-coding RNA"	Chr17	 16342301	 16343315	+	125144	NR_027167.1	NA	NA	NA	NA	NA	inter
CUST_11228_PI429285431	0.9166966	A	0.9235775	A	0.995241879456956	0	lncRNA	12786-1_{1..2448}	lnc-SERPINB8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERPINB8-1:1	chr18	 61685866	 61688313	+	lnc-SERPINB8-1	lnc-SERPINB8-1:1	XLOC_012704	linc-CDH7-2	NA	NA	NA	inter
CUST_39886_PI429285431	1.3013358	A	0.9251417	A	1.29791337628695	0	lncRNA	40774-1_{1..1899}	n406566|NR_024074|lncRNA|Homosapiens||RefGeneNoncode|NR_024074||7.2421600|-0.2423372	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406566|NR_024074|lncRNA|Homosapiens||RefGeneNoncode|NR_024074||7.2421600|-0.2423372	chr15	 23255241	 23257139	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40"	NA	inter
CUST_27633_PI429285431	0.89195323	A	0.8993684	A	0.994873382013471	0	lncRNA	29211-1_{1..572}	n324837|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000157552|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000157552|-1.2668800|-0.3108084	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324837|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000157552|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000157552|-1.2668800|-0.3108084	chr21	 28249110	 28249681	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4086_PI429285431	0.9731199	A	0.90897465	A	1.04546535196942	0	lncRNA	4047-2_{3001..3322}	"transcript_id ""ENST00000499809.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000499809.1"" | genecode_v17"	chr11	115627966	115628287	-	ENSG00000246100.3	ENST00000499809.1	CTC-774J1.2	CTC-774J1.2-001	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50"	NA	inter
CUST_11022_PI429285431	6.743572	P	6.755954	P	0.991454176539144	0	lncRNA	12568-1_{1..333}	lnc-THNSL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THNSL2-1:1	chr2	 88584404	 88584736	+	lnc-THNSL2-1	lnc-THNSL2-1:1	XLOC_001561	linc-C2orf51	NA	NA	NA	inter
CUST_2522_PI429285431	1.7008413	A	1.5420785	A	1.11632940613968	0	lncRNA	2510-1_{1..998}	"transcript_id ""ENST00000414875.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414875.2"" | genecode_v17"	chr6	 37512921	 37513918	+	ENSG00000227920.2	ENST00000414875.2	RP1-153P14.5	RP1-153P14.5-001	NA	NA	NA	inter
CUST_22573_PI429285431	2.4811285	A	1.8047899	A	1.59807885741259	0	lncRNA	24160-1_{1..490}	lnc-AC006435.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC006435.1-1:2	chr17	  2319009	  2319498	-	lnc-AC006435.1-1	lnc-AC006435.1-1:2	ENSG00000205821.3	RP1-59D14.3	METTL16	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20chr17:2319343-2329143"	NA	inter
CUST_27994_PI429285431	3.6879594	P	4.244751	P	0.679812314022773	0	lncRNA	29603-1_{1..441}	n325248|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328657|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328657|-1.2135700|-0.2918613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325248|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328657|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328657|-1.2135700|-0.2918613	chr2	 75012062	 75012502	+	NA	NA	NA	NA	HK2	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.86;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30chr2:75002062-75029053"	NA	inter
CUST_21204_PI429285431	5.084161	P	5.169977	P	0.942251440124656	0	lncRNA	22829-1_{1..562}	lnc-ERAL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ERAL1-2:1	chr17	 27219905	 27220466	+	lnc-ERAL1-2	lnc-ERAL1-2:1	ENSG00000264304.1	RP11-20B24.7	FLOT2	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60chr17:27209905-27224715"	NA	inner
CUST_3402_PI429285431	1.0696518	A	0.90079534	A	1.12416706994654	0	lncRNA	3375-1_{1..653}	"transcript_id ""ENST00000588217.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588217.1"" | genecode_v17"	chr9	 42468743	 42469395	+	ENSG00000223839.3	ENST00000588217.1	FAM95B1	FAM95B1-008	CBWD7	NA	chr9:42478004-42480652	inter
CUST_1916_PI429285431	3.236244	P	3.5658016	P	0.795780471082577	0	lncRNA	1907-1_{1..587}	"transcript_id ""ENST00000510736.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510736.1"" | genecode_v17"	chr4	139230896	139231482	+	ENSG00000251372.1	ENST00000510736.1	LINC00499	LINC00499-003	NA	NA	NA	inter
CUST_50_PI429201921	1.0613691	A	2.5554616	A	0.355004077424182	0	lncRNA	51-1_{1..1562}	TC08002226.hg.1	TCONS_l2_00028538-XLOC_l2_014438 // Broad TUCP // linc-XKR6-2 chr8:-:11203436-11204999 // chr8 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr8:-:11203436-11204999	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00028538-XLOC_l2_014438	linc-XKR6-2	chr8	 11203436	 11204999	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36498_PI429285431	0.90411264	A	0.9087106	A	0.996818010283921	0	lncRNA	37697-1_{1..1145}	n344998|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_547|NULL|-1.4144100|-0.3952725	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344998|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_547|NULL|-1.4144100|-0.3952725	chr8	 41402849	 41403993	+	NA	NA	NA	NA	GINS4	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20chr8:41392849-41402565"	NA	inter
CUST_20674_PI429285431	2.0937219	A	2.9516249	A	0.551753966104362	0	lncRNA	22311-1_{1..686}	lnc-SIDT1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-SIDT1-1:2	chr3	113152639	113153324	+	lnc-SIDT1-1	lnc-SIDT1-1:2	ENSG00000243849.1	WDR52-AS1	WDR52	"hg19_refFlat_WDR52:range=chr3:113081977-1131525115'pad=0,hg19_refFlat_WDR52:range=chr3:113081977-1131525115'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_WDR52:range=chr3:113010404-1131525115'pad=0,hg19_refFlat_WDR52:range=chr3:113010404-1131525115'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20chr3:113142639-113160361"	NA	inner
CUST_4782_PI429285431	2.025583	A	2.2561817	A	0.852281132594948	0	lncRNA	4726-1_{1..582}	"transcript_id ""ENST00000554328.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554328.1"" | genecode_v17"	chr14	 39944044	 39944625	+	ENSG00000258526.1	ENST00000554328.1	RP11-111A21.1	RP11-111A21.1-004	NA	NA	NA	inter
CUST_39898_PI429285431	4.642526	P	4.425433	P	1.16238903582456	0	lncRNA	40782-1_{1..1828}	n406605|NR_024125|lncRNA|Homosapiens||RefGeneNoncode|NR_024125||1.3853300|-0.2125079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406605|NR_024125|lncRNA|Homosapiens||RefGeneNoncode|NR_024125||1.3853300|-0.2125079	chr1	116947335	116949162	-	NA	NA	NA	NA	ATP1A1	NA	chr1:116937335-116947396	inner
CUST_6997_PI429285431	5.3061547	P	5.9157734	P	0.655369891350697	0	lncRNA	6945-1_{1..664}	"transcript_id ""ENST00000602478.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602478.1"" | genecode_v17"	chr22	 43011250	 43011913	+	ENSG00000270022.1	ENST00000602478.1	RNU12	RNU12-001	POLDIP3	NA	chr22:43001250-43010962	inter
CUST_23692_PI429285431	6.853909	P	7.0859833	P	0.851409858300744	0	lncRNA	25257-1_{1..2472}	lnc-APOA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-APOA1-1:1	chr11	116760586	116763057	-	lnc-APOA1-1	lnc-APOA1-1:1	ENSG00000231865.1	SIK3-IT1	SIK3	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60chr11:116750586-116771437"	NA	inner
LNCA_21_P0005918	4.01345	P	3.9951477	P	1.01276699868767	0	lncRNA	TCONS_00015196	NA	NA	NA	NA	XLOC_007255	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007255), lincRNA [TCONS_00015196]"	chr8:145069194-145069135	hs|8q24.3	Agilent_HUMAN_G3V2	TCONS_00015196	TCONS_00015196	chr8	145069135	145069194	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49917_PI429285431	5.364374	P	5.484497	P	0.920109201435597	0	lncRNA	53667-1_{1..1119}	hg19_lincRNAsTranscripts_TCONS_l2_00026777 range=chr7:97595607-97601657 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026777 range=chr7:97595607-97601657 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 97595607	 97596725	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22149_PI429285431	1.858258	A	2.687169	A	0.562954020686503	0	lncRNA	23750-1_{1..571}	lnc-PMP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PMP2-1:2	chr8	 82192830	 82193400	-	lnc-PMP2-1	lnc-PMP2-1:2	ENSG00000254027.1	RP11-363E6.3	FABP5	"hg19_refFlat_FABP5:range=chr8:82192831-821968025'pad=0,hg19_refFlat_FABP5:range=chr8:82192831-821968025'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20chr8:82192718-82197012"	NA	inner
CUST_21650_PI429285431	0.8916502	A	1.0411414	A	0.901568365627165	0	lncRNA	23262-1_{1..428}	lnc-RPLP1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPLP1-2:2	chr15	 69988006	 69988433	+	lnc-RPLP1-2	lnc-RPLP1-2:2	ENSG00000259641.1	RP11-279F6.3	NA	NA	NA	inter
CUST_372_PI429285431	0.89728564	A	0.90174633	A	0.996912860348782	0	lncRNA	364-1_{1..461}	"transcript_id ""ENST00000430316.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430316.1"" | genecode_v17"	chr1	116995657	116996117	-	ENSG00000233154.1	ENST00000430316.1	RP4-655J12.4	RP4-655J12.4-003	NA	NA	NA	inter
CUST_24318_PI429285431	12.184204	P	12.0605955	P	1.08945642944093	0	lncRNA	25870-1_{1..427}	lnc-FRMD5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FRMD5-1:2	chr15	 44581342	 44581768	-	lnc-FRMD5-1	lnc-FRMD5-1:2	ENSG00000259653.1	RP11-616K22.3	CASC4	"hg19_refFlat_CASC4:range=chr15:44581228-447056045'pad=0,hg19_refFlat_CASC4:range=chr15:44581228-447056045'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.50chr15:44580909-44591413"	NA	inner
CUST_30370_PI429285431	0.9171063	A	1.5476341	A	0.645940059384743	0	lncRNA	32146-1_{1..464}	n335468|AY789475|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257804|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257804|0.0168772|-0.1226490	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335468|AY789475|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257804|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257804|0.0168772|-0.1226490	chr13	 20797501	 20797964	-	NA	NA	NA	NA	GJB6	NA	chr13:20796101-20806534	inner
CUST_27091_PI429285431	0.89009506	A	1.4789544	A	0.664868374322439	0	lncRNA	28624-1_{1..733}	n324202|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000137349|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000137349|-1.3282100|-0.3962391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324202|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000137349|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000137349|-1.3282100|-0.3962391	chr7	 89779745	 89780477	+	NA	NA	NA	NA	STEAP1	NA	chr7:89783689-89794141	inner
LNCA_21_P0012469	2.0745203	A	2.6770406	A	0.658602411708534	0	lncRNA	TCONS_l2_00019629	NA	NA	NA	NA	XLOC_l2_010448	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010448), lincRNA [TCONS_l2_00019629]"	chr3:180283823-180245004	hs|3q26.33	Agilent_HUMAN_G3V2	TCONS_l2_00019629	TCONS_l2_00019629	chr3	180245004	180283823	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18814_PI429285431	0.9019244	A	0.90890527	A	0.995172917631503	0	lncRNA	20508-1_{1..542}	lnc-PPP2R5E-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP2R5E-1:1	chr14	 63785538	 63786079	-	lnc-PPP2R5E-1	lnc-PPP2R5E-1:1	ENSG00000179600	GPHB5	GPHB5	NA	chr14:63779642-63784563	inner
CUST_27519_PI429285431	1.2905551	A	2.2878368	A	0.500942979083581	0	lncRNA	29090-1_{1..3000}	n324698|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320766|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320766|0.2124910|-0.2625664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324698|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320766|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320766|0.2124910|-0.2625664	chr22	 25584596	 25587595	+	NA	NA	NA	NA	KIAA1671	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50chr22:25574596-25593415"	NA	inner
CUST_46215_PI429285431	1.5890785	A	1.040833	A	1.4623062644247	0	lncRNA	50457-1_{1..3000}	"gi|301500694|ref|NR_036439.1| Homo sapiens cytidine and dCMP deaminase domain containing 1 (CDADC1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301500694|ref|NR_036439.1| Homo sapiens cytidine and dCMP deaminase domain containing 1 (CDADC1), transcript variant 3, non-coding RNA"	Chr13	 49822047	 49825046	+	81602	NR_036439.1	NA	NA	NA	NA	NA	inter
CUST_8715_PI429285431	3.3858852	P	3.8229256	P	0.738648347024088	0	lncRNA	10258-1_{1..2825}	lnc-PTCH1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PTCH1-3:3	chr9	 98637262	 98640086	-	lnc-PTCH1-3	lnc-PTCH1-3:3	ENSG00000175611	C9orf130	C9orf102	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80chr9:98637900-98647869"	NA	inter
CUST_20081_PI429285431	0.9077416	A	0.90553856	A	1.00152819747013	0	lncRNA	21729-1_{1..465}	lnc-MAGEB10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-MAGEB10-2:1	chrX	 28960317	 28960781	+	lnc-MAGEB10-2	lnc-MAGEB10-2:1	ENSG00000237994.1	RP1-146A15.1	IL1RAPL1	NA	chrX:28950317-28970685	inner
CUST_330_PI429201921	7.9378157	P	8.165671	P	0.8539033552341	0	lncRNA	219-2_{3001..6000}	TC19002329.hg.1	 TCONS_l2_00012845-XLOC_l2_006905 // Broad TUCP // linc-ZNF846-2 chr19:-:9898127-9903629 // chr19 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00012844-XLOC_l2_006905 // Broad TUCP // linc-ZNF846-2 chr19:-:9898019-9903301 // chr19 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00012846-XLOC_l2_006905 // Broad TUCP // linc-ZNF846-2 chr19:-:9898164-9903868 // chr19 // 100 // 100 // 0 // --- // 0///TCONS_l2_00012843-XLOC_l2_006905 // Broad TUCP // linc-ZNF846-2 chr19:-:9897280-9905142 // chr19 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr19:-:9897280-9905142	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00012843-XLOC_l2_006905	linc-ZNF846-2	chr19	  9897280	  9905142	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33575_PI429285431	0.89531845	A	1.1339858	A	0.847527831495339	0	lncRNA	35140-1_{1..239}	n340327|AF056424|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2788|NULL|-1.2402500|-0.4619365	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340327|AF056424|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2788|NULL|-1.2402500|-0.4619365	chr5	  9078689	  9078927	+	NA	NA	NA	NA	SEMA5A	NA	chr5:9068689-9088930	inner
CUST_12484_PI429285431	0.89974785	A	0.91856337	A	0.987042752741967	0	lncRNA	14095-2_{3001..3411}	lnc-LPHN3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LPHN3-2:2	chr4	 63013854	 63014264	+	lnc-LPHN3-2	lnc-LPHN3-2:2	XLOC_003555	linc-STAP1-9	NA	NA	NA	inter
CUST_36696_PI429285431	1.7962743	A	2.0477862	A	0.840015643282963	0	lncRNA	37878-1_{1..3000}	n345185|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_734|NULL|-1.3266300|-0.3364153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345185|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_734|NULL|-1.3266300|-0.3364153	chr12	 79945573	 79948572	-	NA	NA	NA	NA	PAWR	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NOP56:range=chr20:2633307-26389405'pad=0,hg19_refFlat_NOP56:range=chr20:2633307-26389405'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20chr12:79985745-79991518"	NA	inter
CUST_45320_PI429285431	7.698854	P	7.577795	P	1.08753286534549	0	lncRNA	49762-1_{1..2174}	"gi|305410844|ref|NR_036579.1| Homo sapiens aprataxin (APTX), transcript variant 15, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|305410844|ref|NR_036579.1| Homo sapiens aprataxin (APTX), transcript variant 15, non-coding RNA"	Chr9	 32972604	 32974777	-	54840	NR_036579.1	NA	NA	NA	NA	NA	inter
CUST_11032_PI429285431	0.90467584	A	0.9959863	A	0.938669729041326	0	lncRNA	12578-1_{1..787}	lnc-NR2F1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR2F1-1:4	chr5	 92909152	 92909938	+	lnc-NR2F1-1	lnc-NR2F1-1:4	XLOC_004475	linc-NR2F1-1	NR2F1	NA	chr5:92919043-92919384	inter
LNCA_21_P0002304	0.908293	A	0.9244511	A	0.988862544389287	0	lncRNA	TCONS_00003914	NA	NA	NA	NA	XLOC_001719	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001719), lincRNA [TCONS_00003914]"	chr2:157905885-157905944	hs|2q24.1	Agilent_HUMAN_G3V2	TCONS_00003914	TCONS_00003914	chr2	157905885	157905944	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13106_PI429285431	1.5832212	A	1.3841767	A	1.14793782150789	0	lncRNA	14730-1_{1..307}	lnc-DHRS9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHRS9-1:1	chr2	169957576	169957882	+	lnc-DHRS9-1	lnc-DHRS9-1:1	XLOC_001744	linc-BBS5	DHRS9	NA	chr2:169947576-169952677	inter
CUST_936_PI429285431	1.4631029	A	1.4947482	A	0.978303969015938	0	lncRNA	926-1_{1..390}	"transcript_id ""ENST00000441217.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441217.1"" | genecode_v17"	chr2	 74212259	 74212648	+	ENSG00000235499.1	ENST00000441217.1	AC073046.25	AC073046.25-001	NA	NA	NA	inter
CUST_1463_PI429285431	5.5701885	P	5.787362	P	0.860249169934175	0	lncRNA	1452-1_{1..713}	"transcript_id ""ENST00000514010.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514010.1"" | genecode_v17"	chr3	129808276	129808988	-	ENSG00000248243.1	ENST00000514010.1	RP11-93K22.13	RP11-93K22.13-001	ALG1L2	NA	chr3:129800674-129817233	inner
CUST_30290_PI429285431	6.317727	P	6.0520873	P	1.20216898060688	0	lncRNA	32066-1_{1..580}	n335186|AY429563|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254651|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254651|4.4018500|-0.1959634	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335186|AY429563|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254651|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254651|4.4018500|-0.1959634	chrX	 18959674	 18960253	-	NA	NA	NA	NA	PHKA2	NA	chrX:18949674-18982456	inner
CUST_32194_PI429285431	0.89347047	A	0.9016768	A	0.994327952645557	0	lncRNA	33891-1_{1..1096}	n338766|CR596902|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1187|NULL|-1.2267100|-0.3658217	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338766|CR596902|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1187|NULL|-1.2267100|-0.3658217	chr13	 73524667	 73525762	-	NA	NA	NA	NA	PIBF1	NA	chr13:73514667-73535763	inner
CUST_12182_PI429285431	1.2904735	A	2.0173097	A	0.604227520287665	0	lncRNA	13782-1_{1..1117}	lnc-TMEM98-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM98-1:3	chr17	 31276776	 31277892	+	lnc-TMEM98-1	lnc-TMEM98-1:3	XLOC_012171	linc-SPACA3	TMEM98	NA	chr17:31266776-31268667	inter
CUST_1494_PI429285431	3.4807718	P	2.220304	A	2.39573411027643	0	lncRNA	1481-1_{1..606}	"transcript_id ""ENST00000474444.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000474444.1"" | genecode_v17"	chr3	149919961	149920566	-	ENSG00000241048.1	ENST00000474444.1	RP11-167H9.5	RP11-167H9.5-001	NA	NA	NA	inter
LNCA_21_P0005470	5.2968326	P	5.4675684	P	0.88838947125306	0	lncRNA	TCONS_00013695	NA	NA	NA	NA	XLOC_006353	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006353), lincRNA [TCONS_00013695]"	chr7:10676717-10676658	hs|7p21.3	Agilent_HUMAN_G3V2	TCONS_00013695	TCONS_00013695	chr7	 10676658	 10676717	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10081_PI429285431	0.90353507	A	1.0353839	A	0.912661114957066	0	lncRNA	11608-1_{1..902}	lnc-AQP2-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AQP2-1:8	chr12	 50323680	 50324581	+	lnc-AQP2-1	lnc-AQP2-1:8	XLOC_009748	linc-AQP2-1	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40"	NA	inter
CUST_13411_PI429285431	1.254028	A	1.3141453	A	0.959186128409805	0	lncRNA	15049-1_{1..595}	lnc-RAB8B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB8B-1:1	chr15	 63481043	 63481637	+	lnc-RAB8B-1	lnc-RAB8B-1:1	XLOC_011282	linc-RAB8B	RAB8B	NA	chr15:63481728-63491559	inter
LNCA_21_P0005682	0.9122564	A	0.9197229	A	0.994837985799578	0	lncRNA	TCONS_00014667	NA	NA	NA	NA	XLOC_006765	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006765), lincRNA [TCONS_00014667]"	chr8:31248278-31249446	hs|8p12	Agilent_HUMAN_G3V2	TCONS_00014667	TCONS_00014667	chr8	 31248278	 31249446	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15748_PI429285431	0.8977995	A	0.90693635	A	0.993686830509741	0	lncRNA	17436-1_{1..652}	lnc-GPR55-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR55-3:1	chr2	231451362	231452013	-	lnc-GPR55-3	lnc-GPR55-3:1	XLOC_002514	linc-SP110-3	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70"	NA	inter
CUST_21920_PI429285431	1.388091	A	0.8970745	A	1.40543477397179	0	lncRNA	23529-1_{1..547}	lnc-MMRN1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MMRN1-2:4	chr4	 90575732	 90576278	+	lnc-MMRN1-2	lnc-MMRN1-2:4	ENSG00000251095.1	RP11-115D19.1	NA	NA	NA	inter
LNCA_21_P0006607	0.910022	A	1.9229803	A	0.49552910431593	0	lncRNA	TCONS_00017652	NA	NA	NA	NA	XLOC_008328	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008328), lincRNA [TCONS_00017652]"	chrY:22681903-22681844	hs|Yq11.223	Agilent_HUMAN_G3V2	TCONS_00017652	TCONS_00017652	chrY	 22681844	 22681903	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35000_PI429285431	0.9017891	A	0.90995014	A	0.994359167710807	0	lncRNA	36413-1_{1..2210}	n341928|BC030212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4409|NULL|-0.8303870|-0.2083661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341928|BC030212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4409|NULL|-0.8303870|-0.2083661	chr12	 54538852	 54541061	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6804_PI429285431	2.904523	A	2.4342299	A	1.38539089752995	0	lncRNA	6752-1_{1..795}	"transcript_id ""ENST00000416327.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416327.1"" | genecode_v17"	chr21	 23381263	 23382057	-	ENSG00000233215.1	ENST00000416327.1	AP000472.2	AP000472.2-003	NA	NA	NA	inter
CUST_25609_PI429285431	3.0193727	A	2.8263373	A	1.14316638541241	0	lncRNA	27138-1_{1..249}	lnc-CTD-2210P24.4.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2210P24.4.1-2:1	chr11	 45674019	 45674267	+	lnc-CTD-2210P24.4.1-2	lnc-CTD-2210P24.4.1-2:1	ENSG00000255091.1	RP11-495O11.1	CHST1	NA	chr11:45670427-45684241	inner
CUST_37922_PI429285431	1.941722	A	1.6159633	A	1.25332337653465	0	lncRNA	39011-1_{1..1332}	n346463|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2013|NULL|-1.4288300|-0.2783949	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346463|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2013|NULL|-1.4288300|-0.2783949	chr17	 43584520	 43585851	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15399_PI429285431	3.7484221	P	3.9621718	P	0.862293135363367	0	lncRNA	17084-1_{1..677}	lnc-XBP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-XBP1-1:1	chr22	 29227349	 29228025	-	lnc-XBP1-1	lnc-XBP1-1:1	XLOC_014334	linc-XBP1	NA	NA	NA	inter
CUST_17656_PI429285431	1.086067	A	1.288697	A	0.868965015216018	0	lncRNA	19385-1_{1..1209}	lnc-ZNF675-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF675-1:3	chr19	 23714333	 23715541	-	lnc-ZNF675-1	lnc-ZNF675-1:3	XLOC_013278	linc-ZNF91-1	NA	NA	NA	inter
LNCA_21_P0004509	0.902034	A	1.7616379	A	0.551103845814957	0	lncRNA	ENST00000508083	NA	BC043537	NA	Hs.434316	XLOC_004429	NA	ENST00000508083	THC2609187	NA	"BROAD Institute lincRNA (XLOC_004429), lincRNA [TCONS_00010714]"	chr5:73618688-73618747	hs|5q13.3	Agilent_HUMAN_G3V2	ENST00000508083	ENST00000508083	chr5	 73618688	 73618747	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23252_PI429285431	6.0460787	P	6.402414	P	0.781146311102234	0	lncRNA	24824-1_{1..905}	lnc-ARSD-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARSD-3:1	chrX	  2406829	  2407733	-	lnc-ARSD-3	lnc-ARSD-3:1	ENSG00000248421.1	RP11-325D5.3	DHRSX	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50chrX:2396829-2417012"	NA	inner
CUST_23578_PI429285431	3.6460993	P	4.1676717	P	0.696612178438491	0	lncRNA	25145-1_{1..562}	lnc-HERC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HERC1-1:1	chr15	 63893457	 63894018	-	lnc-HERC1-1	lnc-HERC1-1:1	ENSG00000259248.1	RP11-265M18.2	HERC1	"hg19_refFlat_USP3:range=chr15:63796939-638830255'pad=0,hg19_refFlat_USP3:range=chr15:63796939-638830255'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_FBXL22:range=chr15:63889592-638938855'pad=0,hg19_refFlat_FBXL22:range=chr15:63889592-638938855'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.70chr15:63900817-63903788"	NA	inner
CUST_30397_PI429285431	5.3686833	P	5.346612	P	1.01541628291755	0	lncRNA	32177-1_{1..840}	n335517|BC064414|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000261377|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000261377|0.6739830|-0.0441522	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335517|BC064414|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000261377|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000261377|0.6739830|-0.0441522	chr7	 39989872	 39990711	+	NA	NA	NA	NA	CDK13	NA	chr7:39989959-40001002	inner
CUST_26553_PI429285431	1.1565357	A	1.2388783	A	0.944522716452685	0	lncRNA	28058-1_{1..414}	lnc-EFR3B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EFR3B-4:1	chr2	 25650336	 25650749	+	lnc-EFR3B-4	lnc-EFR3B-4:1	ENSG00000224220.1	AC104699.1	DTNB	"hg19_refFlat_DTNB:range=chr2:25602188-258755295'pad=0,hg19_refFlat_DTNB:range=chr2:25602188-258755295'pad=0 3'pad=0 strand=- repeatMasking=none,-97.60;hg19_refFlat_DTNB:range=chr2:25602188-258512305'pad=0,hg19_refFlat_DTNB:range=chr2:25602188-258512305'pad=0 3'pad=0 strand=- repeatMasking=none,-97.60chr2:25640336-25660512"	NA	inner
CUST_32616_PI429285431	8.26734	P	8.255277	P	1.00839648886568	0	lncRNA	34275-1_{1..1426}	n339239|BC037818|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1671|NULL|-1.1809400|-0.4352287	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339239|BC037818|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1671|NULL|-1.1809400|-0.4352287	chr16	 64189072	 64190497	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49857_PI429285431	5.2515693	P	5.872269	P	0.650355432033979	0	lncRNA	53609-1_{1..1010}	hg19_lincRNAsTranscripts_TCONS_l2_00026680 range=chr7:68852750-68859065 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026680 range=chr7:68852750-68859065 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 68852750	 68853759	-	NA	NA	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20"	NA	inter
CUST_26090_PI429285431	1.0602921	A	0.9027003	A	1.11542367670884	0	lncRNA	27603-1_{1..464}	lnc-RASGRP1-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RASGRP1-4:7	chr15	 38363828	 38364291	-	lnc-RASGRP1-4	lnc-RASGRP1-4:7	ENSG00000236914.3	RP11-1008C21.2	NA	NA	NA	inter
CUST_9432_PI429285431	2.5842378	A	1.400587	A	2.27150865118369	0	lncRNA	10938-1_{1..335}	lnc-PRKCQ-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRKCQ-1:1	chr10	  6316039	  6316373	-	lnc-PRKCQ-1	lnc-PRKCQ-1:1	XLOC_008719	linc-IL2RA-1	NA	NA	NA	inter
LNCA_21_P0011555	0.8934914	A	0.8919078	A	1.001098270533	0	lncRNA	TCONS_l2_00010961	NA	NA	NA	NA	XLOC_l2_005892	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005892), lincRNA [TCONS_l2_00010961]"	chr17:72563620-72563679	hs|17q25.1	Agilent_HUMAN_G3V2	TCONS_l2_00010961	TCONS_l2_00010961	chr17	 72563620	 72563679	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27590_PI429285431	4.8283515	P	4.985036	P	0.897084319730134	0	lncRNA	29169-1_{1..407}	n324793|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194933|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194933|-1.0494100|-0.2835544	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324793|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194933|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194933|-1.0494100|-0.2835544	chr21	 39174100	 39174506	-	NA	NA	NA	NA	KCNJ6	NA	chr21:39164100-39260262	inner
CUST_984_PI429285431	0.94412243	A	1.3755833	A	0.741510552985721	0	lncRNA	973-1_{1..552}	"transcript_id ""ENST00000537492.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537492.1"" | genecode_v17"	chr2	104490768	104491319	+	ENSG00000256637.1	ENST00000537492.1	RP11-76I14.1	RP11-76I14.1-003	NA	NA	NA	inter
CUST_29328_PI429285431	15.277081	P	15.239769	P	1.0262000493349	0	lncRNA	31079-1_{1..339}	n332544|BC141920|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000435248|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000435248|2.5598300|-0.1865575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332544|BC141920|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000435248|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000435248|2.5598300|-0.1865575	chr19	 54705440	 54705778	+	NA	NA	NA	NA	RPS9	NA	chr19:54704726-54711515	inner
CUST_30051_PI429285431	1.0764966	A	1.3004484	A	0.856216890012985	0	lncRNA	31820-1_{1..315}	n334555|U52701|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220268_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220268_04|-0.3125480|-0.2574699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334555|U52701|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220268_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220268_04|-0.3125480|-0.2574699	chr6	  3536615	  3536929	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12752_PI429285431	2.235662	A	2.8612576	A	0.648152139952021	0	lncRNA	14377-1_{1..3000}	lnc-ZNF140-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF140-1:1	chr12	133696876	133699875	+	lnc-ZNF140-1	lnc-ZNF140-1:1	XLOC_009969	linc-ZNF10	ZNF10	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_ZNF442:range=chr19:12460515-124744455'pad=0,hg19_refFlat_ZNF442:range=chr19:12460515-124744455'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF625:range=chr19:12256112-122673735'pad=0,hg19_refFlat_ZNF625:range=chr19:12256112-122673735'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80chr12:133702065-133708651"	NA	inter
CUST_27220_PI429285431	10.786029	P	10.573322	P	1.15886057254843	0	lncRNA	28764-1_{1..783}	n324354|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042503|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042503|-1.2641600|-0.5135583	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324354|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042503|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042503|-1.2641600|-0.5135583	chr6	143329862	143330644	-	NA	NA	NA	NA	AIG1	NA	chr6:143382023-143394783	inner
CUST_5876_PI429285431	0.89769363	A	0.9085834	A	0.99248020284793	0	lncRNA	5806-1_{1..517}	"transcript_id ""ENST00000578936.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578936.1"" | genecode_v17"	chr17	 43809069	 43809585	-	ENSG00000265547.1	ENST00000578936.1	RP11-293E1.2	RP11-293E1.2-001	CRHR1	NA	chr17:43799069-43820343	inner
CUST_15757_PI429285431	0.88554597	A	0.88392746	A	1.00112249516986	0	lncRNA	17445-1_{1..605}	lnc-SUMF2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUMF2-5:1	chr7	 56742545	 56743149	+	lnc-SUMF2-5	lnc-SUMF2-5:1	XLOC_006112	linc-ZNF716-3	NA	NA	NA	inter
CUST_14595_PI429285431	0.8920379	A	0.8987495	A	0.995358677763043	0	lncRNA	16262-1_{1..386}	lnc-RP11-116D17.1.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-116D17.1.1-5:1	chr12	115532910	115533295	+	lnc-RP11-116D17.1.1-5	lnc-RP11-116D17.1.1-5:1	XLOC_009892	linc-MAP1LC3B2-7	NA	NA	NA	inter
LNCA_21_P0008600	0.8928971	A	0.88953876	A	1.00233053538797	0	lncRNA	TCONS_00023319	NA	NA	NA	NA	XLOC_011181	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011181), lincRNA [TCONS_00023319]"	chr15:24819619-24819678	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023319	TCONS_00023319	chr15	 24819619	 24819678	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005915	10.673744	P	10.743436	P	0.952841397804474	0	lncRNA	TCONS_00015184	NA	NA	NA	NA	XLOC_007240	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007240), lincRNA [TCONS_00015184]"	chr8:142208102-142208043	hs|8q24.3	Agilent_HUMAN_G3V2	TCONS_00015184	TCONS_00015184	chr8	142208043	142208102	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010244	3.74821	P	3.6565511	P	1.06559476504425	0	lncRNA	TCONS_00029017	NA	NA	NA	NA	XLOC_013940	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013940), lincRNA [TCONS_00029017]"	chr21:40386819-40386878	hs|21q22.2	Agilent_HUMAN_G3V2	TCONS_00029017	TCONS_00029017	chr21	 40386819	 40386878	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39209_PI429285431	7.488663	P	7.528892	P	0.97250056945998	0	lncRNA	40184-1_{1..1328}	n385995|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xtd.2||0.3504210|-0.1258931	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385995|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xtd.2||0.3504210|-0.1258931	chr10	 88965590	 88966917	-	NA	NA	NA	NA	FAM22A	"hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60chr10:88985205-88994735"	NA	inter
CUST_51636_PI429285431	0.9054961	A	1.3816469	A	0.718893119046318	0	lncRNA	55206-1_{1..635}	hg19_lincRNAsTranscripts_TCONS_l2_00010793 range=chr17:42015481-42016278 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010793 range=chr17:42015481-42016278 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 42015481	 42016115	+	NA	NA	NA	NA	PPY	NA	chr17:42018172-42019833	inter
CUST_41052_PI429285431	0.8849206	A	0.9637304	A	0.946838450964829	0	lncRNA	41713-1_{1..1159}	n411723|NR_045002|lncRNA|Homosapiens||RefGeneNoncode|NR_045002||5.8442600|-0.1670734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411723|NR_045002|lncRNA|Homosapiens||RefGeneNoncode|NR_045002||5.8442600|-0.1670734	chr11	 17073432	 17074590	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48316_PI429285431	0.99909294	A	1.3388196	A	0.790191011103211	0	lncRNA	52174-1_{1..969}	hg19_lincRNAsTranscripts_TCONS_l2_00000170 range=chr1:26551759-26556322 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000170 range=chr1:26551759-26556322 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 26551759	 26552727	+	NA	NA	NA	NA	CEP85	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0,hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00chr1:26545577-26566322"	NA	inter
CUST_38362_PI429285431	0.8861339	A	0.91079926	A	0.983048594914998	0	lncRNA	39404-1_{1..964}	n382148|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001wqj.1||-1.0108400|-0.3215204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382148|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001wqj.1||-1.0108400|-0.3215204	chr14	 30084073	 30085036	-	NA	NA	NA	NA	PRKD1	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60chr14:30074073-30095037"	NA	inner
CUST_21339_PI429285431	7.302429	P	7.670779	P	0.774667972538233	0	lncRNA	22962-1_{1..548}	lnc-DEGS2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DEGS2-4:1	chr14	100540854	100541401	-	lnc-DEGS2-4	lnc-DEGS2-4:1	ENSG00000258560.1	CTD-2376I20.1	EVL	NA	chr14:100531751-100551215	inner
CUST_18800_PI429285431	2.2864416	A	3.0295277	P	0.597459944971449	0	lncRNA	20495-1_{1..403}	lnc-TDRD3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TDRD3-3:1	chr13	 61491934	 61492336	+	lnc-TDRD3-3	lnc-TDRD3-3:1	ENSG00000227510	RP11-196P2.1	NA	NA	NA	inter
LNCA_21_P0012405	3.0724168	P	2.8092937	A	1.20007377600127	0	lncRNA	TCONS_l2_00018911	NA	NA	NA	NA	XLOC_l2_009929	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009929), lincRNA [TCONS_l2_00018911]"	chr3:148080470-148080529	hs|3q24	Agilent_HUMAN_G3V2	TCONS_l2_00018911	TCONS_l2_00018911	chr3	148080470	148080529	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013774	3.8481445	P	4.4847193	P	0.64323829294674	0	lncRNA	TCONS_l2_00030263	NA	NA	NA	NA	XLOC_l2_015565	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015565), lincRNA [TCONS_l2_00030263]"	chrX:74844567-74844626	hs|Xq13.3	Agilent_HUMAN_G3V2	TCONS_l2_00030263	TCONS_l2_00030263	chrX	 74844567	 74844626	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19184_PI429285431	2.6879447	A	2.9654086	A	0.825040073413842	0	lncRNA	20854-1_{1..455}	lnc-HSPB8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-HSPB8-2:1	chr12	119439456	119439910	+	lnc-HSPB8-2	lnc-HSPB8-2:1	ENSG00000256031.1	RP11-364C11.3	SRRM4	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr12:119429456-119449647"	NA	inner
CUST_38836_PI429285431	1.5243512	A	0.8839593	A	1.5587525281797	0	lncRNA	39828-1_{1..3000}	n384643|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jqc.1||1.8498900|-0.3636335	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384643|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jqc.1||1.8498900|-0.3636335	chr5	 54824669	 54827668	-	NA	NA	NA	NA	PPAP2A	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30chr5:54814669-54830873"	NA	inner
CUST_22304_PI429285431	1.3104819	A	1.4982717	A	0.877949705157119	0	lncRNA	23903-1_{1..398}	lnc-PLEKHH2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLEKHH2-1:1	chr2	 43460318	 43460715	+	lnc-PLEKHH2-1	lnc-PLEKHH2-1:1	ENSG00000234936.1	AC010883.5	THADA	"hg19_refFlat_THADA:range=chr2:43458087-438195315'pad=0,hg19_refFlat_THADA:range=chr2:43458087-438195315'pad=0 3'pad=0 strand=- repeatMasking=none,-99.80chr2:43457975-43470533"	NA	inter
CUST_23371_PI429285431	6.647692	P	6.983265	P	0.792469326412486	0	lncRNA	24939-1_{1..409}	lnc-PMM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PMM2-1:1	chr16	  8948121	  8948529	+	lnc-PMM2-1	lnc-PMM2-1:1	ENSG00000259939.1	RP11-77H9.5	PMM2	NA	chr16:8938121-8943194	inner
CUST_21427_PI429285431	12.270099	P	11.162738	P	2.15451180009585	0	lncRNA	23046-1_{1..2493}	lnc-BID-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BID-2:1	chr22	 18489928	 18492420	-	lnc-BID-2	lnc-BID-2:1	ENSG00000234913.1	XXbac-B476C20.13	MICAL3	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80chr22:18479928-18500074"	NA	inner
CUST_40087_PI429285431	6.6825924	P	6.7571917	P	0.949605831720356	0	lncRNA	40934-1_{1..1440}	n407433|NR_026890|lncRNA|Homosapiens||RefGeneNoncode|NR_026890||6.1720800|-0.2923100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407433|NR_026890|lncRNA|Homosapiens||RefGeneNoncode|NR_026890||6.1720800|-0.2923100	chr9	 79013514	 79014953	+	NA	NA	NA	NA	RFK	NA	chr9:79003514-79009444	inter
CUST_9692_PI429285431	1.29594	A	1.076277	A	1.16446154742545	0	lncRNA	11207-1_{1..499}	lnc-PIK3C3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIK3C3-2:2	chr18	 37237386	 37237884	+	lnc-PIK3C3-2	lnc-PIK3C3-2:2	XLOC_012664	linc-PIK3C3-2	NA	NA	NA	inter
LNCA_19_P00804777	3.756462	P	2.27051	A	2.80101944732491	0	lncRNA	AK022299	NA	AK022299	NA	NA	XLOC_013282	NA	NA	THC2497071	NA	"BROAD Institute lincRNA (XLOC_013282), lincRNA [TCONS_00027278]"	chr19:28268277-28268218	hs|19q11	Agilent_HUMAN_G3V2	AK022299	AK022299	chr19	 28268218	 28268277	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5139_PI429285431	0.9095875	A	2.38055	A	0.360741548355561	0	lncRNA	5079-1_{1..370}	"transcript_id ""ENST00000560866.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560866.1"" | genecode_v17"	chr15	 36148678	 36149047	+	ENSG00000248079.2	ENST00000560866.1	ATPBD4-AS1	ATPBD4-AS1-002	NA	NA	NA	inter
CUST_34762_PI429285431	5.618276	P	2.2905202	A	10.0404762697243	0	lncRNA	36202-1_{1..671}	n341670|CR618670|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4141|NULL|-1.2701800|-0.1996450	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341670|CR618670|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4141|NULL|-1.2701800|-0.1996450	chr9	 27948075	 27948745	-	NA	NA	NA	NA	LINGO2	NA	chr9:27948528-27958746	inner
CUST_30587_PI429285431	8.869069	P	8.248997	P	1.53695188341228	0	lncRNA	32369-1_{1..399}	n335867|X58968|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322299|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322299|-1.1702400|-0.1434912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335867|X58968|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322299|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322299|-1.1702400|-0.1434912	chr16	 55513092	 55513490	+	NA	NA	NA	NA	MMP2	NA	chr16:55513081-55523491	inner
CUST_28947_PI429285431	5.20117	P	4.4022455	P	1.73980365456502	0	lncRNA	30668-1_{1..397}	n326377|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000034017|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000034017|1.1153900|-0.0834645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326377|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000034017|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000034017|1.1153900|-0.0834645	chr1	150444957	150445353	+	NA	NA	NA	NA	RPRD2	NA	chr1:150434957-150449042	inner
CUST_24749_PI429285431	1.0298663	A	1.2827495	A	0.839217577067847	0	lncRNA	26293-1_{1..1105}	lnc-NPY5R-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NPY5R-3:1	chr4	162968525	162969629	+	lnc-NPY5R-3	lnc-NPY5R-3:1	ENSG00000249419.1	RP11-497K21.1	FSTL5	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10chr4:162958525-162978719"	NA	inner
CUST_40807_PI429285431	3.6004765	P	3.853871	P	0.838920205892676	0	lncRNA	41513-1_{1..2420}	n410570|NR_037809|lncRNA|Homosapiens||RefGeneNoncode|NR_037809||-0.8173810|-0.1800325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n410570|NR_037809|lncRNA|Homosapiens||RefGeneNoncode|NR_037809||-0.8173810|-0.1800325	chr2	239419330	239421749	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29075_PI429285431	3.3384042	P	2.8682976	A	1.38521181692356	0	lncRNA	30807-1_{1..3000}	n326569|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026413|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026413|-1.2586300|-0.4318614	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326569|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026413|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026413|-1.2586300|-0.4318614	chr1	 73544440	 73547439	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25962_PI429285431	0.8929567	A	1.0244665	A	0.912875613411913	0	lncRNA	27482-1_{1..710}	lnc-SRR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRR-1:1	chr17	  2136244	  2136953	+	lnc-SRR-1	lnc-SRR-1:1	ENSG00000225084.1	AL450226.2	SMG6	NA	chr17:2126244-2146904	inner
CUST_6799_PI429285431	3.8417318	P	3.9657118	P	0.917652603589486	0	lncRNA	6747-1_{1..609}	"transcript_id ""ENST00000428205.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428205.1"" | genecode_v17"	chr21	 22939084	 22939692	+	ENSG00000234730.1	ENST00000428205.1	AF241725.4	AF241725.4-001	NA	NA	NA	inter
CUST_33914_PI429285431	3.396228	P	1.432484	A	3.90072961708339	0	lncRNA	35456-1_{1..1350}	n340708|AK096708|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3171|NULL|-1.1830000|-0.3617449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340708|AK096708|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3171|NULL|-1.1830000|-0.3617449	chr5	158122909	158124258	-	NA	NA	NA	NA	EBF1	NA	chr5:158122923-158134276	inner
CUST_20940_PI429285431	3.8886566	P	4.297387	P	0.753285988585599	0	lncRNA	22571-1_{1..762}	lnc-TMEM144-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM144-1:4	chr4	159100813	159101574	+	lnc-TMEM144-1	lnc-TMEM144-1:4	ENSG00000248429.1	RP11-597D13.9	FAM198B	NA	chr4:159090813-159094202	inter
CUST_36590_PI429285431	5.4691596	P	5.980337	P	0.701649579858441	0	lncRNA	37784-1_{1..431}	n345086|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_635|NULL|-1.3614000|-0.2745119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345086|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_635|NULL|-1.3614000|-0.2745119	chrX	 52992160	 52992590	+	NA	NA	NA	NA	FAM156A	NA	chrX:52982160-53002591	inner
CUST_14187_PI429285431	1.2193038	A	2.8988788	A	0.312174586428323	0	lncRNA	15839-1_{1..884}	lnc-PFDN4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PFDN4-1:1	chr20	 52558714	 52559597	+	lnc-PFDN4-1	lnc-PFDN4-1:1	XLOC_013571	linc-PFDN4-2	BCAS1	NA	chr20:52560079-52569047	inter
CUST_4986_PI429285431	7.337559	P	7.5308795	P	0.874590449843341	0	lncRNA	4930-1_{1..493}	"transcript_id ""ENST00000555875.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555875.1"" | genecode_v17"	chr14	100157782	100158274	-	ENSG00000258672.1	ENST00000555875.1	RP11-543C4.3	RP11-543C4.3-001	CYP46A1	"hg19_refFlat_CYP46A1:range=chr14:100150755-1001930645'pad=0,hg19_refFlat_CYP46A1:range=chr14:100150755-1001930645'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50chr14:100150755-100169985"	NA	inner
CUST_36169_PI429285431	1.958626	A	1.951982	A	1.00461589042016	0	lncRNA	37441-2_{3001..3543}	n344729|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_278|NULL|-1.3257600|-0.2993432	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344729|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_278|NULL|-1.3257600|-0.2993432	chr12	 46840072	 46840614	-	NA	NA	NA	NA	NA	"hg19_refFlat_NSD1:range=chr5:176562105-1767224605'pad=0,hg19_refFlat_NSD1:range=chr5:176562105-1767224605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NSD1:range=chr5:176562172-1767224605'pad=0,hg19_refFlat_NSD1:range=chr5:176562172-1767224605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90"	NA	inter
CUST_27200_PI429285431	4.1595693	P	4.129431	P	1.0211100069235	0	lncRNA	28742-1_{1..533}	n324332|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042822|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042822|-0.7797790|-0.2531395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324332|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042822|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042822|-0.7797790|-0.2531395	chr6	156856051	156856583	-	NA	NA	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10"	NA	inter
CUST_33887_PI429285431	6.445653	P	6.8918715	P	0.733964148776918	0	lncRNA	35430-1_{1..1165}	n340678|L38935|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3141|NULL|-1.0803700|-0.1853106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340678|L38935|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3141|NULL|-1.0803700|-0.1853106	chr17	 40731534	 40732698	+	NA	NA	NA	NA	FAM134C	NA	chr17:40731526-40742698	inter
LNCA_21_P0008285	2.884646	A	3.2368	P	0.78341355726755	0	lncRNA	TCONS_00022389	NA	NA	NA	NA	XLOC_010754	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010754), lincRNA [TCONS_00022389]"	chr14:21672450-21672509	hs|14q11.2	Agilent_HUMAN_G3V2	TCONS_00022389	TCONS_00022389	chr14	 21672450	 21672509	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43041_PI429285431	8.741201	P	8.677997	P	1.04478348692031	0	lncRNA	46662-1_{1..76}	ENST00000516026 ncrna:snRNA chromosome:GRCh37:8:55065367:55065442:-1 gene:ENSG00000251835 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516026 ncrna:snRNA chromosome:GRCh37:8:55065367:55065442:-1 gene:ENSG00000251835 gene_biotype:snRNA transcript_biotype:snRNA	chr8	 55065367	 55065442	-	ENSG00000251835	ENST00000516026	NA	NA	MRPL15	NA	chr8:55055367-55061074	inter
CUST_3365_PI429285431	1.9726857	A	2.4619699	A	0.712378460088182	0	lncRNA	3340-1_{1..110}	"transcript_id ""ENST00000603198.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603198.1"" | genecode_v17"	chr9	 10948372	 10948481	-	ENSG00000270372.1	ENST00000603198.1	RP11-109M17.2	RP11-109M17.2-001	NA	NA	NA	inter
CUST_2498_PI429285431	0.9081759	A	0.92489374	A	0.988478957738211	0	lncRNA	2490-1_{1..537}	"transcript_id ""ENST00000456103.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456103.1"" | genecode_v17"	chr6	 28616063	 28616599	-	ENSG00000235570.1	ENST00000456103.1	LINC00533	LINC00533-001	NA	NA	NA	inter
CUST_15838_PI429285431	0.90326583	A	1.2047334	A	0.81142655920708	0	lncRNA	17529-1_{1..2338}	lnc-LRRK1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRK1-3:1	chr15	101837326	101839663	+	lnc-LRRK1-3	lnc-LRRK1-3:1	XLOC_011390	linc-OR4F6-1	PCSK6	NA	chr15:101844133-101848894	inter
CUST_20652_PI429285431	1.4998848	A	2.2272685	A	0.603998260607569	0	lncRNA	22291-1_{1..1784}	lnc-HERC1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HERC1-1:5	chr15	 63892788	 63894571	-	lnc-HERC1-1	lnc-HERC1-1:5	ENSG00000259248.1	RP11-265M18.2	HERC1	"hg19_refFlat_USP3:range=chr15:63796939-638830255'pad=0,hg19_refFlat_USP3:range=chr15:63796939-638830255'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30chr15:63900817-63902959"	NA	inter
CUST_18788_PI429285431	0.89416313	A	0.9018993	A	0.994652047066722	0	lncRNA	20484-1_{1..2206}	lnc-APBA2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APBA2-1:3	chr15	 29023821	 29026026	+	lnc-APBA2-1	lnc-APBA2-1:3	ENSG00000248334	AC055876.5	NA	NA	NA	inter
CUST_3251_PI429285431	1.7859232	A	2.725556	A	0.521365563397785	0	lncRNA	3230-1_{1..731}	"transcript_id ""ENST00000524287.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524287.1"" | genecode_v17"	chr8	102299673	102300403	+	ENSG00000253282.1	ENST00000524287.1	KB-1410C5.3	KB-1410C5.3-001	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80"	NA	inter
CUST_13520_PI429285431	7.3133764	P	7.408253	P	0.936352334308952	0	lncRNA	15160-1_{1..499}	lnc-RP11-17A1.2.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-17A1.2.1-1:4	chr11	 22881923	 22882421	-	lnc-RP11-17A1.2.1-1	lnc-RP11-17A1.2.1-1:4	XLOC_009393	linc-SVIP	LOC100500938	NA	chr11:22871923-22881972	inner
CUST_5019_PI429285431	5.8869047	P	5.6033554	P	1.21718570870021	0	lncRNA	4959-1_{1..456}	"transcript_id ""ENST00000556720.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556720.1"" | genecode_v17"	chr14	101403738	101404193	+	ENSG00000225746.4	ENST00000556720.1	AL132709.5	AL132709.5-007	NA	NA	NA	inter
CUST_52011_PI429285431	0.89863753	A	0.9588913	A	0.959095399644363	0	lncRNA	55542-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00017137 range=chr21:15216173-15226304 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017137 range=chr21:15216173-15226304 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 15219173	 15222172	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16503_PI429285431	6.0090246	P	6.31264	P	0.810219436711549	0	lncRNA	18201-1_{1..762}	lnc-SERGEF-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERGEF-2:4	chr11	 17717579	 17718340	-	lnc-SERGEF-2	lnc-SERGEF-2:4	XLOC_009385	linc-USH1C	NA	NA	NA	inter
LNCA_21_P0008144	0.9132483	A	0.9230332	A	0.993240572553136	0	lncRNA	TCONS_00021973	NA	NA	NA	NA	XLOC_010574	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010574), lincRNA [TCONS_00021973]"	chr13:39783824-39783765	hs|13q13.3	Agilent_HUMAN_G3V2	TCONS_00021973	TCONS_00021973	chr13	 39783765	 39783824	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10179_PI429285431	2.412668	A	3.1711369	P	0.591123343930575	0	lncRNA	11704-1_{1..611}	lnc-ITGA2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITGA2-1:3	chr5	 52409689	 52410299	+	lnc-ITGA2-1	lnc-ITGA2-1:3	XLOC_004382	linc-FST	MOCS2	NA	chr5:52399689-52405598	inter
CUST_44401_PI429285431	6.0861745	P	5.079734	P	2.00894838773237	0	lncRNA	49016-2_{3001..5185}	"gi|363807338|ref|NR_045644.1| Homo sapiens SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 (SMARCAD1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|363807338|ref|NR_045644.1| Homo sapiens SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 (SMARCAD1), transcript variant 5, non-coding RNA"	Chr4	 95132235	 95134419	+	56916	NR_045644.1	NA	NA	NA	NA	NA	inter
CUST_47393_PI429285431	0.9273395	A	0.9594213	A	0.978008019368849	0	lncRNA	51441-1_{1..3000}	"gi|408684414|ref|NR_073202.1| Homo sapiens Down syndrome cell adhesion molecule (DSCAM), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|408684414|ref|NR_073202.1| Homo sapiens Down syndrome cell adhesion molecule (DSCAM), transcript variant 3, non-coding RNA"	Chr21	 41384343	 41387342	-	1826	NR_073202.1	NA	NA	NA	NA	NA	inter
CUST_19539_PI429285431	2.9201293	A	3.2771015	A	0.780801538111126	0	lncRNA	21195-1_{1..556}	lnc-CCDC102A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC102A-1:1	chr16	 57665523	 57666078	-	lnc-CCDC102A-1	lnc-CCDC102A-1:1	ENSG00000261633.1	RP11-405F3.5	GPR56	NA	chr16:57655523-57675559	inner
CUST_27015_PI429285431	1.9745084	A	2.6081486	A	0.644548041843048	0	lncRNA	28545-1_{1..504}	n324120|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052420|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052420|0.2788170|-0.3708289	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324120|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052420|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052420|0.2788170|-0.3708289	chr9	 36297038	 36297541	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30"	NA	inter
CUST_50971_PI429285431	2.6848183	A	2.6423023	A	1.02990837866098	0	lncRNA	54612-1_{1..346}	hg19_lincRNAsTranscripts_TCONS_l2_00005793 range=chr12:80818224-80819003 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005793 range=chr12:80818224-80819003 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 80818224	 80818569	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10843_PI429285431	1.2011311	A	1.0844166	A	1.08426281902488	0	lncRNA	12380-1_{1..1714}	lnc-CCDC69-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC69-1:1	chr5	150554750	150556463	-	lnc-CCDC69-1	lnc-CCDC69-1:1	XLOC_005053	linc-ANXA6	CCDC69	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-15.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70chr5:150560613-150566044"	NA	inter
CUST_5534_PI429285431	1.4470524	A	1.5492325	A	0.931624121995972	0	lncRNA	5465-1_{1..425}	"transcript_id ""ENST00000566876.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566876.1"" | genecode_v17"	chr16	 50424827	 50425251	-	ENSG00000261092.1	ENST00000566876.1	RP11-21B23.2	RP11-21B23.2-001	NA	NA	NA	inter
CUST_16263_PI429285431	1.7541492	A	2.5719934	A	0.567289002021663	0	lncRNA	17966-1_{1..263}	lnc-ZNF438-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF438-2:1	chr10	 31110179	 31110441	-	lnc-ZNF438-2	lnc-ZNF438-2:1	XLOC_008769	linc-LYZL2-1	NA	NA	NA	inter
CUST_10249_PI429285431	0.9000287	A	1.2822921	A	0.767232957680134	0	lncRNA	11775-1_{1..1390}	lnc-FOXD2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXD2-2:1	chr1	 48231039	 48232428	+	lnc-FOXD2-2	lnc-FOXD2-2:1	XLOC_000179	linc-SLC5A9-4	LOC388630	"hg19_refFlat_TRABD2B:range=chr1:48231574-484624615'pad=0,hg19_refFlat_TRABD2B:range=chr1:48231574-484624615'pad=0 3'pad=0 strand=- repeatMasking=none,-106.50chr1:48226200-48241744"	NA	inner
CUST_47174_PI429285431	3.0878193	A	3.1967382	P	0.927282671457615	0	lncRNA	51251-1_{1..1536}	"gi|383387808|ref|NR_047530.1| Homo sapiens sialic acid binding Ig-like lectin 17, pseudogene (SIGLEC17P), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|383387808|ref|NR_047530.1| Homo sapiens sialic acid binding Ig-like lectin 17, pseudogene (SIGLEC17P), transcript variant 2, non-coding RNA"	Chr19	 51670585	 51672120	+	284367	NR_047530.1	NA	NA	NA	NA	NA	inter
CUST_23958_PI429285431	0.9139185	A	0.9208075	A	0.995236291694911	0	lncRNA	25514-1_{1..2223}	lnc-MED12L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MED12L-1:1	chr3	150796676	150798898	+	lnc-MED12L-1	lnc-MED12L-1:1	ENSG00000239265.1	CLRN1-AS1	MED12L	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00chr3:150804676-150808513"	NA	inter
CUST_7083_PI429285431	0.9101549	A	1.2576765	A	0.785933090140871	0	lncRNA	7018-1_{1..676}	"transcript_id ""ENST00000433732.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433732.1"" | genecode_v17"	chrX	 73047544	 73048219	-	ENSG00000229807.5	ENST00000433732.1	XIST	XIST-007	NA	NA	NA	inter
CUST_46684_PI429285431	8.178504	P	7.5119753	P	1.5872492541496	0	lncRNA	50847-4_{9001..9448}	"gi|224586818|ref|NR_027264.1| Homo sapiens golgi glycoprotein 1 (GLG1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224586818|ref|NR_027264.1| Homo sapiens golgi glycoprotein 1 (GLG1), transcript variant 4, non-coding RNA"	Chr16	 74490325	 74490772	-	2734	NR_027264.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30"	NA	inter
CUST_22254_PI429285431	13.567114	P	13.665169	P	0.934291728111992	0	lncRNA	23855-1_{1..408}	lnc-MME-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MME-4:1	chr3	155204750	155205157	+	lnc-MME-4	lnc-MME-4:1	ENSG00000242925.1	PLCH1-AS2	PLCH1	NA	chr3:155197671-155214910	inner
CUST_34142_PI429285431	6.5248837	P	6.6984324	P	0.88665901811762	0	lncRNA	35661-1_{1..951}	n340982|BC031022|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3448|NULL|-0.3882510|-0.2670546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340982|BC031022|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3448|NULL|-0.3882510|-0.2670546	chr11	 17439192	 17440142	-	NA	NA	NA	NA	ABCC8	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30chr11:17429192-17457011"	NA	inner
CUST_21482_PI429285431	2.687169	A	3.4094074	P	0.606156236186576	0	lncRNA	23100-1_{1..422}	lnc-GLIPR1L1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLIPR1L1-1:6	chr12	 75691980	 75692401	+	lnc-GLIPR1L1-1	lnc-GLIPR1L1-1:6	ENSG00000254451.2	RP11-560G2.1	GLIPR1L1	NA	chr12:75699232-75702288	inner
CUST_24611_PI429285431	7.210605	P	7.6147847	P	0.75566583365658	0	lncRNA	26160-1_{1..407}	lnc-VGF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VGF-1:1	chr7	100660696	100661102	-	lnc-VGF-1	lnc-VGF-1:1	ENSG00000227053.1	RP11-395B7.4	MUC17	NA	chr7:100663364-100670889	inner
CUST_41988_PI429285431	3.4320471	P	3.546169	P	0.923944500789367	0	lncRNA	43818-1_{1..108}	ENST00000582353 ncrna:miRNA chromosome:GRCh37:9:96327975:96328082:-1 gene:ENSG00000263875 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582353 ncrna:miRNA chromosome:GRCh37:9:96327975:96328082:-1 gene:ENSG00000263875 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 96327975	 96328082	-	ENSG00000263875	ENST00000582353	NA	NA	FAM120A	NA	chr9:96317975-96328397	inner
CUST_33717_PI429285431	8.073731	P	8.011092	P	1.04437440039897	0	lncRNA	35276-1_{1..2729}	n340495|AK127588|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2956|NULL|-1.0074400|-0.3232059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340495|AK127588|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2956|NULL|-1.0074400|-0.3232059	chr5	 71448583	 71451311	+	NA	NA	NA	NA	MAP1B	NA	chr5:71438583-71461067	inner
CUST_45835_PI429285431	5.438057	P	5.4743047	P	0.975188014629938	0	lncRNA	50169-1_{1..2938}	"gi|385648245|ref|NR_047663.1| Homo sapiens actinin, alpha 3 (ACTN3), transcript variant 1, non-coding, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385648245|ref|NR_047663.1| Homo sapiens actinin, alpha 3 (ACTN3), transcript variant 1, non-coding, non-coding RNA"	Chr11	 66314312	 66317249	+	89	NR_047663.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008886	1.6017154	A	2.6342683	A	0.488844355582994	0	lncRNA	AK098656	NA	AK098656	NA	Hs.149769	XLOC_012020	NA	NA	THC2719706	NA	"BROAD Institute lincRNA (XLOC_012020), lincRNA [TCONS_00024275]"	chr16:80600750-80600691	hs|16q23.2	Agilent_HUMAN_G3V2	AK098656	AK098656	chr16	 80600691	 80600750	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005471	1.0781269	A	0.89040244	A	1.13896582562193	0	lncRNA	TCONS_00013698	NA	NA	NA	NA	XLOC_006356	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006356), lincRNA [TCONS_00013698]"	chr7:12713536-12713477	hs|7p21.3	Agilent_HUMAN_G3V2	TCONS_00013698	TCONS_00013698	chr7	 12713477	 12713536	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48129_PI429285431	6.3028727	P	6.7054567	P	0.756502103992211	0	lncRNA	51997-1_{1..645}	"gi|397137279|ref|XR_111131.2| PREDICTED: Homo sapiens uncharacterized LOC100506057, transcript variant 1 (LOC100506057), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397137279|ref|XR_111131.2| PREDICTED: Homo sapiens uncharacterized LOC100506057, transcript variant 1 (LOC100506057), misc_RNA"	NA	NA	NA	NA	NA	XR_111131.2	NA	NA	NA	NA	NA	Unknown
CUST_45117_PI429285431	6.9532814	P	6.8660684	P	1.06231601562572	0	lncRNA	49598-1_{1..2611}	"gi|310120131|ref|XR_108709.1| PREDICTED: Homo sapiens uncharacterized LOC389602 (LOC389602), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120131|ref|XR_108709.1| PREDICTED: Homo sapiens uncharacterized LOC389602 (LOC389602), misc_RNA"	Chr7	155755332	155757942	+	389602	XR_108709.2	NA	NA	NA	NA	NA	inter
CUST_23112_PI429285431	0.91110563	A	0.90788746	A	1.00223315524721	0	lncRNA	24683-1_{1..384}	lnc-ADAM8-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAM8-1:2	chr10	135061295	135061678	-	lnc-ADAM8-1	lnc-ADAM8-1:2	ENSG00000166917.6	RP13-49I15.5	VENTX	NA	chr10:135051408-135055433	inter
CUST_35582_PI429285431	7.060965	P	6.9031415	P	1.11560283059305	0	lncRNA	36998-1_{1..331}	n342718|L12143|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5220|NULL|2.8026000|0.0083306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342718|L12143|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5220|NULL|2.8026000|0.0083306	chr6	  1610789	  1611119	+	NA	NA	NA	NA	FOXC1	NA	chr6:1610681-1614132	inner
CUST_322_PI429285431	0.88870513	A	0.8941347	A	0.996243581919706	0	lncRNA	313-1_{1..532}	"transcript_id ""ENST00000424711.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000424711.1"" | genecode_v17"	chr1	 95197689	 95198220	-	ENSG00000224081.3	ENST00000424711.1	RP11-86H7.1	RP11-86H7.1-006	NA	NA	NA	inter
CUST_32746_PI429285431	3.6176589	P	3.9591308	P	0.789235688516328	0	lncRNA	34383-1_{1..1159}	n339374|CR603400|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1806|NULL|-1.0007000|-0.2081951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339374|CR603400|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1806|NULL|-1.0007000|-0.2081951	chr3	 57112970	 57114128	+	NA	NA	NA	NA	ARHGEF3	NA	chr3:57102970-57113336	inner
CUST_3329_PI429285431	1.8713707	A	1.7634034	A	1.07770871751502	0	lncRNA	3308-1_{1..564}	"transcript_id ""ENST00000523232.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523232.1"" | genecode_v17"	chr8	137501691	137502254	+	ENSG00000253839.1	ENST00000523232.1	RP11-431D12.1	RP11-431D12.1-001	NA	NA	NA	inter
CUST_40524_PI429285431	1.2083665	A	0.9074964	A	1.23188714955637	0	lncRNA	41286-1_{1..1656}	n409589|NR_033971|lncRNA|Homosapiens||RefGeneNoncode|NR_033971||-0.8931660|-0.2024113	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409589|NR_033971|lncRNA|Homosapiens||RefGeneNoncode|NR_033971||-0.8931660|-0.2024113	chr11	 31838113	 31839768	+	NA	NA	NA	NA	PAX6	NA	chr11:31828113-31839509	inter
CUST_26912_PI429285431	7.297723	P	7.655277	P	0.780486725391303	0	lncRNA	28430-1_{1..550}	n323988|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053783|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053783|-1.0674100|-0.2386216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323988|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053783|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053783|-1.0674100|-0.2386216	chr9	116468536	116469085	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014508	0.9287545	A	0.8898174	A	1.02735664672358	0	lncRNA	XR_110149	XR_110149	XR_110149	NA	Hs.674872	LOC100505756	uncharacterized LOC100505756	NA	THC2632872	NA	"PREDICTED: Homo sapiens hypothetical LOC100505756 (LOC100505756), miscRNA [XR_110149]"	chr18:66567362-66567303	hs|18q22.1	Agilent_HUMAN_G3V2	XR_110149	XR_110149	chr18	 66567303	 66567362	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37584_PI429285431	4.341522	P	4.135658	P	1.15337687338495	0	lncRNA	38685-1_{1..877}	n346059|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1609|NULL|-1.3680000|-0.2774263	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346059|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1609|NULL|-1.3680000|-0.2774263	chr3	 98432740	 98433616	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010972	0.8947383	A	0.89082694	A	1.00271482664187	0	lncRNA	XR_109044	XR_109044	XR_109044	NA	NA	LOC100507261	uncharacterized LOC100507261	ENST00000533531	THC2668732	NA	"PREDICTED: Homo sapiens hypothetical LOC100507261 (LOC100507261), miscRNA [XR_109044]"	chr11:43591858-43591917	hs|11p11.2	Agilent_HUMAN_G3V2	XR_109044	XR_109044	chr11	 43591858	 43591917	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35178_PI429285431	0.90572715	A	0.9033997	A	1.0016145674181	0	lncRNA	36580-1_{1..1957}	n342157|BX537662|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4644|NULL|-1.1241100|-0.3271729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342157|BX537662|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4644|NULL|-1.1241100|-0.3271729	chr6	155161311	155163267	+	NA	NA	NA	NA	SCAF8	NA	chr6:155151311-155155194	inter
CUST_28227_PI429285431	0.8950949	A	0.9003208	A	0.996384234828068	0	lncRNA	29861-1_{1..2562}	n325517|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280514|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280514|-0.1235710|-0.3919645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325517|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280514|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280514|-0.1235710|-0.3919645	chr19	 44861853	 44864414	+	NA	NA	NA	NA	ZFP112	NA	chr19:44851853-44860856	inter
LNCA_21_P0004940	0.8958397	A	0.8917729	A	1.00282286776286	0	lncRNA	TCONS_00011949	NA	NA	NA	NA	XLOC_005461	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005461), lincRNA [TCONS_00011949]"	chr6:129010574-129010633	hs|6q22.33	Agilent_HUMAN_G3V2	TCONS_00011949	TCONS_00011949	chr6	129010574	129010633	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16111_PI429285431	0.88531965	A	2.3795576	A	0.354968288335849	0	lncRNA	17817-1_{1..567}	lnc-KLHL29-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL29-2:1	chr2	 22762612	 22763178	+	lnc-KLHL29-2	lnc-KLHL29-2:1	XLOC_001393	linc-KLHL29-2	NA	NA	NA	inter
CUST_18731_PI429285431	0.9122511	A	0.91283584	A	0.999594771244999	0	lncRNA	20429-1_{1..1664}	lnc-GPR89B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GPR89B-2:1	chr1	147629069	147630732	+	lnc-GPR89B-2	lnc-GPR89B-2:1	ENSG00000251150	BX842679.1	NA	NA	NA	inter
CUST_42809_PI429285431	0.88639355	A	0.886949	A	0.999615065504859	0	lncRNA	45810-1_{1..114}	ENST00000516556 ncrna:snoRNA chromosome:GRCh37:13:94021100:94021213:-1 gene:ENSG00000252365 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516556 ncrna:snoRNA chromosome:GRCh37:13:94021100:94021213:-1 gene:ENSG00000252365 gene_biotype:snoRNA transcript_biotype:snoRNA	chr13	 94021100	 94021213	-	ENSG00000252365	ENST00000516556	NA	NA	GPC6	NA	chr13:94011100-94031213	inner
CUST_44808_PI429285431	1.8547356	A	0.9106533	A	1.92396466071205	0	lncRNA	49342-1_{1..1013}	"gi|337298633|ref|NR_038981.1| Homo sapiens uncharacterized LOC100507254 (LOC100507254), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|337298633|ref|NR_038981.1| Homo sapiens uncharacterized LOC100507254 (LOC100507254), non-coding RNA"	Chr6	132455118	132456130	+	100507254	NR_038981.1	NA	NA	NA	NA	NA	inter
CUST_7110_PI429285431	1.2889484	A	0.89262265	A	1.31615166891241	0	lncRNA	7046-1_{1..772}	"transcript_id ""ENST00000454625.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454625.1"" | genecode_v17"	chrX	119144675	119145446	-	ENSG00000234493.1	ENST00000454625.1	GS1-421I3.2	GS1-421I3.2-001	NA	NA	NA	inter
CUST_24571_PI429285431	1.2957916	A	1.0875138	A	1.15530822499861	0	lncRNA	26119-1_{1..577}	lnc-LRRC16A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC16A-1:1	chr6	 25056547	 25057123	+	lnc-LRRC16A-1	lnc-LRRC16A-1:1	ENSG00000229313.1	RP3-425P12.5	NA	NA	NA	inter
CUST_19329_PI429285431	6.730838	P	6.8140664	P	0.943942967163132	0	lncRNA	20995-1_{1..2289}	lnc-CTD-2031P19.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CTD-2031P19.3.1-1:1	chr5	 55297577	 55299865	+	lnc-CTD-2031P19.3.1-1	lnc-CTD-2031P19.3.1-1:1	ENSG00000227908.3	CTD-2031P19.3	IL6ST	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50chr5:55287577-55290821"	NA	inter
CUST_5022_PI429285431	3.321425	P	3.7694378	P	0.733051874721398	0	lncRNA	4962-1_{1..644}	"transcript_id ""ENST00000427085.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427085.2"" | genecode_v17"	chr14	101413420	101414063	+	ENSG00000225746.4	ENST00000427085.2	AL132709.5	AL132709.5-006	NA	NA	NA	inter
CUST_49859_PI429285431	5.295984	P	5.5587006	P	0.833516925402042	0	lncRNA	53611-1_{1..1697}	hg19_lincRNAsTranscripts_TCONS_l2_00026000 range=chr7:72299972-72308033 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026000 range=chr7:72299972-72308033 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 72299972	 72301668	+	NA	NA	NA	NA	TYW1B	NA	chr7:72289972-72298813	inter
CUST_41384_PI429285431	0.9053236	A	0.89701706	A	1.00577426193295	0	lncRNA	42485-1_{1..91}	ENST00000362262 ncrna:miRNA chromosome:GRCh37:X:133674371:133674461:-1 gene:ENSG00000199132 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362262 ncrna:miRNA chromosome:GRCh37:X:133674371:133674461:-1 gene:ENSG00000199132 gene_biotype:miRNA transcript_biotype:miRNA	chrX	133674371	133674461	-	ENSG00000199132	ENST00000362262	NA	NA	NA	NA	NA	inter
CUST_13250_PI429285431	0.92447966	A	1.0188991	A	0.936649091870515	0	lncRNA	14880-1_{1..510}	lnc-USP12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP12-2:1	chr13	 27776224	 27776733	-	lnc-USP12-2	lnc-USP12-2:1	XLOC_010541	linc-USP12-4	NA	NA	NA	inter
CUST_34880_PI429285431	4.4456644	P	4.370056	P	1.0538053432997	0	lncRNA	36305-1_{1..532}	n341794|M14753|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4271|NULL|1.7287300|-0.2436036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341794|M14753|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4271|NULL|1.7287300|-0.2436036	chr9	133589372	133589903	+	NA	NA	NA	NA	ABL1	NA	chr9:133589268-133739509	inner
CUST_14217_PI429285431	1.3129902	A	0.9166099	A	1.31620143509921	0	lncRNA	15873-1_{1..2107}	lnc-AGGF1-3:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AGGF1-3:18	chr5	 76447717	 76449823	+	lnc-AGGF1-3	lnc-AGGF1-3:18	XLOC_004437	linc-PDE8B-1	NA	NA	NA	inter
CUST_28720_PI429285431	5.637796	P	5.839362	P	0.86960612076931	0	lncRNA	30420-1_{1..390}	n326110|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046451|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046451|-0.9862960|-0.1991387	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326110|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046451|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046451|-0.9862960|-0.1991387	chr10	  3272562	  3272951	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_826_PI429285431	3.9408932	P	4.5846786	P	0.640031404119426	0	lncRNA	819-1_{1..847}	"transcript_id ""ENST00000603129.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603129.1"" | genecode_v17"	chr2	 34938657	 34939503	+	ENSG00000228262.3	ENST00000603129.1	AC073218.2	AC073218.2-005	NA	NA	NA	inter
LNCA_21_P0005999	1.0572392	A	1.4421282	A	0.765837919342295	0	lncRNA	ENST00000442260	NA	NA	NA	NA	XLOC_007286	NA	ENST00000442260	NA	NA	"BROAD Institute lincRNA (XLOC_007286), lincRNA [TCONS_00015650]"	chr9:14030048-14030107	hs|9p23	Agilent_HUMAN_G3V2	ENST00000442260	ENST00000442260	chr9	 14030048	 14030107	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27301_PI429285431	1.534245	A	1.1993947	A	1.26124652988851	0	lncRNA	28859-1_{1..593}	n324453|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041541|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041541|-1.1176100|-0.2721067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324453|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041541|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041541|-1.1176100|-0.2721067	chr6	 93489441	 93490033	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16190_PI429285431	0.8887717	A	0.88808644	A	1.00047509886068	0	lncRNA	17895-1_{1..461}	lnc-FPGT-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FPGT-3:5	chr1	 73820756	 73821216	+	lnc-FPGT-3	lnc-FPGT-3:5	XLOC_000256	linc-FPGT-2	NA	NA	NA	inter
CUST_29782_PI429285431	2.9712949	A	3.5777862	P	0.656792109393267	0	lncRNA	31545-1_{1..507}	n333481|BC028232|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091549|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091549|-1.2314000|-0.1134520	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n333481|BC028232|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091549|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091549|-1.2314000|-0.1134520	chr16	  2015035	  2015541	+	NA	NA	NA	NA	RNF151	NA	chr16:2016875-2018976	inter
CUST_23524_PI429285431	0.92357826	A	1.3382444	A	0.750193079826777	0	lncRNA	25091-1_{1..464}	lnc-ACSL4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACSL4-1:1	chrX	108877873	108878336	-	lnc-ACSL4-1	lnc-ACSL4-1:1	ENSG00000243736.1	RP1-136J15.3	ACSL4	NA	chrX:108881341-108887915	inter
CUST_28948_PI429285431	5.4010077	P	5.4210443	P	0.986207684889007	0	lncRNA	30669-1_{1..566}	n326378|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000087261|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000087261|0.2374170|-0.2949578	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326378|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000087261|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000087261|0.2374170|-0.2949578	chr1	148754856	148755421	+	NA	NA	NA	NA	NBPF16	NA	chr1:148744856-148758311	inner
CUST_12539_PI429285431	0.92142934	A	0.921667	A	0.999835280208863	0	lncRNA	14150-2_{3001..3376}	lnc-ASB7-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASB7-4:1	chr15	100894884	100895259	+	lnc-ASB7-4	lnc-ASB7-4:1	XLOC_011384	linc-ASB7-3	ADAMTS17	NA	chr15:100881884-100882183	inter
CUST_39042_PI429285431	2.157174	A	2.6828403	A	0.69463822135528	0	lncRNA	40022-1_{1..3000}	n385466|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003yti.2||-0.9326390|-0.3214306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385466|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003yti.2||-0.9326390|-0.3214306	chr8	133133105	133136104	-	NA	NA	NA	NA	KCNQ3	NA	chr8:133133105-133148858	inner
CUST_9657_PI429285431	5.0737104	P	2.019344	A	8.30722367480199	0	lncRNA	11174-1_{1..911}	lnc-LRIG2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRIG2-1:1	chr1	113674520	113675430	+	lnc-LRIG2-1	lnc-LRIG2-1:1	XLOC_000350	linc-MAGI3	LRIG2	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90chr1:113664520-113667342"	NA	inter
LNCA_21_P0007381	6.872013	P	7.742469	P	0.546973938455056	0	lncRNA	TCONS_00019720	NA	NA	NA	NA	XLOC_009517	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009517), lincRNA [TCONS_00019720]"	chr11:82805965-82805906	hs|11q14.1	Agilent_HUMAN_G3V2	TCONS_00019720	TCONS_00019720	chr11	 82805906	 82805965	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39960_PI429285431	4.6094522	P	4.720173	P	0.926125235139439	0	lncRNA	40831-1_{1..2644}	n407004|NR_024501|lncRNA|Homosapiens||RefGeneNoncode|NR_024501||-0.9766860|-0.2668172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n407004|NR_024501|lncRNA|Homosapiens||RefGeneNoncode|NR_024501||-0.9766860|-0.2668172	chrX	146990948	146993591	-	NA	NA	NA	NA	FMR1	"hg19_refFlat_FMR1:range=chrX:146993698-1470303505'pad=0,hg19_refFlat_FMR1:range=chrX:146993698-1470303505'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60;hg19_refFlat_FMR1:range=chrX:146993698-1470303645'pad=0,hg19_refFlat_FMR1:range=chrX:146993698-1470303645'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60chrX:146993469-147013676"	NA	inter
CUST_24169_PI429285431	4.03812	P	3.8103023	P	1.17106219559412	0	lncRNA	25720-1_{1..587}	lnc-RP11-728F11.4.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-728F11.4.1-1:3	chr11	117709322	117709908	+	lnc-RP11-728F11.4.1-1	lnc-RP11-728F11.4.1-1:3	ENSG00000254528.2	RP11-728F11.4	FXYD6-FXYD2	NA	chr11:117699322-117719522	inner
CUST_24948_PI429285431	0.91729033	A	0.91988426	A	0.998203640123171	0	lncRNA	26488-1_{1..3000}	lnc-LRRC1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC1-1:2	chr6	 53859762	 53862761	+	lnc-LRRC1-1	lnc-LRRC1-1:2	ENSG00000236740.2	RP11-411K7.1	NA	NA	NA	inter
CUST_17816_PI429285431	1.0058208	A	1.169278	A	0.892882846784963	0	lncRNA	19552-1_{1..210}	lnc-AKAP17A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AKAP17A-1:1	chrX	  1704576	  1704785	+	lnc-AKAP17A-1	lnc-AKAP17A-1:1	XLOC_007913	linc-AKAP17A-1	ASMT	NA	chrX:1714348-1714599	inter
CUST_52020_PI429285431	0.9077924	A	0.92780834	A	0.986221807899126	0	lncRNA	55551-1_{1..472}	hg19_lincRNAsTranscripts_TCONS_l2_00017423 range=chr21:15311695-15335106 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017423 range=chr21:15311695-15335106 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 15311695	 15312166	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35828_PI429285431	10.0588255	P	9.874544	P	1.13625094950181	0	lncRNA	37231-1_{1..1110}	n344501|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_49|NULL|-1.2329800|-0.1144309	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344501|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_49|NULL|-1.2329800|-0.1144309	chr20	 37075357	 37076466	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15810_PI429285431	3.140267	A	3.6417985	P	0.706356546791142	0	lncRNA	17500-1_{1..967}	lnc-CTR9-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTR9-3:6	chr11	 10899928	 10900894	+	lnc-CTR9-3	lnc-CTR9-3:6	XLOC_009065	linc-USP47-3	NA	NA	NA	inter
CUST_44205_PI429285431	7.9143906	P	8.181436	P	0.831019709920979	0	lncRNA	48859-1_{1..983}	"gi|197382349|ref|NR_002941.2| Homo sapiens phosducin-like 3 pseudogene (LOC285359), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|197382349|ref|NR_002941.2| Homo sapiens phosducin-like 3 pseudogene (LOC285359), non-coding RNA"	Chr3	101431278	101432260	+	285359	NR_002941.2	NA	NA	NA	NA	NA	inter
CUST_38374_PI429285431	0.9091133	A	0.92689294	A	0.987751721010938	0	lncRNA	39414-1_{1..1723}	n382207|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001xxu.2||-0.6867050|-0.3264707	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382207|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001xxu.2||-0.6867050|-0.3264707	chr14	 90296177	 90297899	-	NA	NA	NA	NA	EFCAB11	NA	chr14:90286177-90313007	inner
CUST_39568_PI429285431	1.8106793	A	1.6333886	A	1.13075838959534	0	lncRNA	40512-1_{1..1999}	n387528|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011grs.1||-1.2615900|-0.3340561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387528|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011grs.1||-1.2615900|-0.3340561	chr6	  1441746	  1443744	-	NA	NA	NA	NA	NA	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20"	NA	inter
LNCA_19_P00315810	8.138475	P	7.98032	P	1.11585920135727	0	lncRNA	ENST00000455068	NA	NA	NA	NA	XLOC_001906	NA	ENST00000455068	NA	NA	"BROAD Institute lincRNA (XLOC_001906), lincRNA [TCONS_00003130]"	chr2:237642104-237642163	hs|2q37.3	Agilent_HUMAN_G3V2	ENST00000455068	ENST00000455068	chr2	237642104	237642163	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49388_PI429285431	4.122119	P	4.5996	P	0.718230587546278	0	lncRNA	53202-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00022558 range=chr5:142095841-142142773 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022558 range=chr5:142095841-142142773 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	142095841	142098840	+	NA	NA	NA	NA	ARHGAP26	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90chr5:142150292-142152773"	NA	inter
CUST_33311_PI429285431	4.218667	P	3.4073133	A	1.7548572763467	0	lncRNA	34894-1_{1..2610}	n340028|AK023559|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2482|NULL|-1.2188400|-0.2685422	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340028|AK023559|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2482|NULL|-1.2188400|-0.2685422	chr10	 50726990	 50729599	-	NA	NA	NA	NA	PGBD3	NA	chr10:50723151-50732359	inner
CUST_22526_PI429285431	2.9627094	A	3.9682746	P	0.498074963958324	0	lncRNA	24114-1_{1..422}	lnc-AC005003.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC005003.1-1:2	chr22	 31733654	 31734075	+	lnc-AC005003.1-1	lnc-AC005003.1-1:2	ENSG00000228839.1	RP3-400N23.6	PATZ1	NA	chr22:31723654-31742249	inner
CUST_12730_PI429285431	0.9008619	A	1.2514322	A	0.784274011654382	0	lncRNA	14353-1_{1..424}	lnc-MYL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYL2-2:1	chr12	111456118	111456541	-	lnc-MYL2-2	lnc-MYL2-2:1	XLOC_010199	linc-MYL2-4	NA	NA	NA	inter
CUST_12412_PI429285431	1.6704909	A	2.6261811	A	0.515594864803394	0	lncRNA	14025-1_{1..800}	lnc-C2orf54-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2orf54-1:4	chr2	241898657	241899456	-	lnc-C2orf54-1	lnc-C2orf54-1:4	XLOC_002548	linc-C2orf54-1	LOC728763	NA	chr2:241888657-241908771	inter
CUST_6635_PI429285431	1.020425	A	1.3191347	A	0.812979173705444	0	lncRNA	6581-1_{1..381}	"transcript_id ""ENST00000425900.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425900.1"" | genecode_v17"	chr20	  7050261	  7050641	+	ENSG00000232271.1	ENST00000425900.1	RP4-764O22.1	RP4-764O22.1-001	NA	NA	NA	inter
LNCA_21_P0008830	2.57459	A	2.6186705	A	0.96990778957942	0	lncRNA	TCONS_00023971	NA	NA	NA	NA	XLOC_011294	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011294), lincRNA [TCONS_00023971]"	chr15:69856106-69856165	hs|15q23	Agilent_HUMAN_G3V2	TCONS_00023971	TCONS_00023971	chr15	 69856106	 69856165	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41946_PI429285431	9.704197	P	9.662173	P	1.0295572105238	0	lncRNA	43707-1_{1..111}	ENST00000362131 ncrna:miRNA chromosome:GRCh37:X:114058017:114058127:1 gene:ENSG00000199001 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362131 ncrna:miRNA chromosome:GRCh37:X:114058017:114058127:1 gene:ENSG00000199001 gene_biotype:miRNA transcript_biotype:miRNA	chrX	114058017	114058127	+	ENSG00000199001	ENST00000362131	NA	NA	HTR2C	NA	chrX:114048017-114068127	inner
CUST_43740_PI429285431	7.89369	P	8.310714	P	0.748968007626948	0	lncRNA	48482-1_{1..2237}	"gi|213512796|ref|NR_024486.1| Homo sapiens uncharacterized LOC100130093 (LOC100130093), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|213512796|ref|NR_024486.1| Homo sapiens uncharacterized LOC100130093 (LOC100130093), transcript variant 2, non-coding RNA"	Chr1	227916240	227918476	+	100130093	NR_024486.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_JMJD4:range=chr1:227920093-2279231125'pad=0,hg19_refFlat_JMJD4:range=chr1:227920093-2279231125'pad=0 3'pad=0 strand=- repeatMasking=none,-104.30"	NA	inter
CUST_23440_PI429285431	2.6549318	A	3.1065974	P	0.731198187830006	0	lncRNA	25008-1_{1..292}	lnc-SRSF2-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRSF2-4:3	chr17	 75269746	 75270037	-	lnc-SRSF2-4	lnc-SRSF2-4:3	ENSG00000263718.1	RP11-285E9.6	9-Sep	NA	chr17:75277492-75280037	inter
CUST_50545_PI429285431	3.984287	P	3.7883217	P	1.14549034607731	0	lncRNA	54237-1_{1..461}	hg19_lincRNAsTranscripts_TCONS_l2_00030412 range=chrX:154578072-154579221 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030412 range=chrX:154578072-154579221 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	154578072	154578532	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41435_PI429285431	2.1307242	A	2.1662908	A	0.975648512065639	0	lncRNA	42601-1_{1..65}	ENST00000584160 ncrna:miRNA chromosome:GRCh37:16:15001574:15001638:1 gene:ENSG00000263918 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584160 ncrna:miRNA chromosome:GRCh37:16:15001574:15001638:1 gene:ENSG00000263918 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 15001574	 15001638	+	ENSG00000263918	ENST00000584160	NA	NA	NA	NA	NA	inter
CUST_13723_PI429285431	0.89679575	A	0.8953044	A	1.00103425952562	0	lncRNA	15361-2_{3001..3114}	lnc-ZNF227-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF227-1:1	chr19	 44703210	 44703323	+	lnc-ZNF227-1	lnc-ZNF227-1:1	XLOC_013093	linc-ZNF227	NA	NA	NA	inter
CUST_26084_PI429285431	3.6509562	P	3.4445953	P	1.15377419344265	0	lncRNA	27597-1_{1..188}	lnc-LYZL1-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LYZL1-3:9	chr10	 29756169	 29756356	+	lnc-LYZL1-3	lnc-LYZL1-3:9	ENSG00000224597.3	RP11-534G20.3	SVIL	NA	chr10:29746277-29766207	inner
LNCA_21_P0009879	4.5935125	P	5.2265196	P	0.644830951884565	0	lncRNA	ENST00000428954	NA	NA	NA	NA	XLOC_013647	NA	ENST00000428954	NA	NA	"BROAD Institute lincRNA (XLOC_013647), lincRNA [TCONS_00027999]"	chr20:7237289-7237230	hs|20p12.3	Agilent_HUMAN_G3V2	ENST00000428954	ENST00000428954	chr20	  7237230	  7237289	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40002_PI429285431	4.9737587	P	5.4470944	P	0.72029724930449	0	lncRNA	40866-1_{1..994}	n407139|NR_026551|lncRNA|Homosapiens||RefGeneNoncode|NR_026551||2.3969300|-0.0946609	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407139|NR_026551|lncRNA|Homosapiens||RefGeneNoncode|NR_026551||2.3969300|-0.0946609	chrX	 15693038	 15694031	+	NA	NA	NA	NA	TMEM27	NA	chrX:15683038-15683154	inter
CUST_39585_PI429285431	0.89280856	A	0.8926532	A	1.00010769314446	0	lncRNA	40528-1_{1..1179}	n387577|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ine.1||-0.8995540|-0.2062198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387577|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ine.1||-0.8995540|-0.2062198	chr6	  2732711	  2733889	+	NA	NA	NA	NA	MYLK4	NA	chr6:2722711-2743890	inner
LNCA_21_P0014901	1.5260351	A	0.89609706	A	1.54749853107786	0	lncRNA	XR_132897	XR_132897	XR_132897	NA	Hs.656074	LOC100653007	NA	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100653007 (LOC100653007), miscRNA [XR_132897]"	chr11:63998500-63998441	hs|11q13.1	Agilent_HUMAN_G3V2	XR_132897	XR_132897	chr11	 63998441	 63998500	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37294_PI429285431	0.88858956	A	1.7723106	A	0.541967768362037	0	lncRNA	38403-1_{1..3000}	n345737|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1286|NULL|-1.3934300|-0.1321395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345737|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1286|NULL|-1.3934300|-0.1321395	chr7	150102419	150105418	+	NA	NA	NA	NA	ZNF775	NA	chr7:150092419-150095719	inter
CUST_25405_PI429285431	3.1303349	P	3.162434	A	0.977996291708594	0	lncRNA	26936-1_{1..304}	lnc-MAPT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAPT-1:1	chr17	 44112887	 44113190	+	lnc-MAPT-1	lnc-MAPT-1:1	ENSG00000262372.1	RP11-669E14.6	MAPT	NA	chr17:44102887-44105700	inner
LNCA_21_P0002235	5.043918	P	5.230333	P	0.878786736202615	0	lncRNA	TCONS_00003725	NA	NA	NA	NA	XLOC_001514	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001514), lincRNA [TCONS_00003725]"	chr2:67777916-67777975	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00003725	TCONS_00003725	chr2	 67777916	 67777975	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7702_PI429285431	2.3134553	A	2.9635856	A	0.637222758963197	0	lncRNA	9335-1_{1..600}	lnc-F2RL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-F2RL2-2:1	chr5	 76012002	 76012601	-	lnc-F2RL2-2	lnc-F2RL2-2:1	ENSG00000225407	CTD-2384B11.2	IQGAP2	NA	chr5:76002002-76003957	inner
CUST_37785_PI429285431	1.1838326	A	2.1155136	A	0.524247143300771	0	lncRNA	38882-3_{6001..9000}	n346296|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1846|NULL|-1.2991100|-0.3277946	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n346296|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1846|NULL|-1.2991100|-0.3277946	chr5	 90603137	 90606136	-	NA	NA	NA	NA	NA	"hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.61;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_10961_PI429285431	1.0068631	A	0.90607595	A	1.07235839327377	0	lncRNA	12503-1_{1..1454}	lnc-AC010325.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AC010325.1-1:1	chr19	 51321483	 51322936	+	lnc-AC010325.1-1	lnc-AC010325.1-1:1	XLOC_013119	linc-KLK3-2	KLK15	NA	chr19:51328545-51332108	inter
CUST_5750_PI429285431	3.3358707	P	3.7853122	P	0.732326293237395	0	lncRNA	5675-1_{1..686}	"transcript_id ""ENST00000584952.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584952.1"" | genecode_v17"	chr17	 17138747	 17139432	-	ENSG00000266498.1	ENST00000584952.1	RP11-45M22.5	RP11-45M22.5-001	COPS3	NA	chr17:17145325-17149432	inner
CUST_22147_PI429285431	3.8275716	P	4.1041794	P	0.825529800205469	0	lncRNA	23748-1_{1..1190}	lnc-WDR45L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR45L-1:2	chr17	 80560865	 80562054	-	lnc-WDR45L-1	lnc-WDR45L-1:2	ENSG00000261845.1	RP13-638C3.4	FOXK2	NA	chr17:80550865-80562483	inner
CUST_14285_PI429285431	0.89831346	A	1.4469836	A	0.683650018888304	0	lncRNA	15945-1_{1..465}	lnc-PFKP-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PFKP-3:1	chr10	  3248597	  3249061	+	lnc-PFKP-3	lnc-PFKP-3:1	XLOC_008346	linc-AKR1E2-17	NA	NA	NA	inter
CUST_35033_PI429285431	3.260366	P	1.246416	A	4.03886521155941	0	lncRNA	36445-2_{3001..3402}	n341975|BC041400|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4456|NULL|-1.2127600|-0.3503080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341975|BC041400|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4456|NULL|-1.2127600|-0.3503080	chr12	 81189298	 81189699	-	NA	NA	NA	NA	LIN7A	NA	chr12:81191171-81199685	inter
CUST_2882_PI429285431	1.4831116	A	1.2946688	A	1.13953307539418	0	lncRNA	2863-1_{1..733}	"transcript_id ""ENST00000445784.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445784.1"" | genecode_v17"	chr7	 89941810	 89942542	+	ENSG00000225498.1	ENST00000445784.1	AC002064.5	AC002064.5-001	C7orf63	NA	chr7:89931810-89940377	inter
LNCA_19_P00327354	6.722041	P	6.5052843	P	1.16211810824567	0	lncRNA	AK057050	NA	AK057050	NA	Hs.529860	XLOC_l2_015037	NA	NA	THC2500019	NA	"BROAD Institute lincRNA (XLOC_l2_015037), lincRNA [TCONS_l2_00029078]"	chr9:132267304-132267363	hs|9q34.11	Agilent_HUMAN_G3V2	AK057050	AK057050	chr9	132267304	132267363	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_302_PI429201921	2.4016168	A	1.4037803	A	1.9970029998979	0	lncRNA	208-1_{1..3000}	TC22000983.hg.1	TCONS_00029333-XLOC_014161 // Rinn lincRNAs // linc-AIFM3 chr22:+:21311690-21318877 // chr22 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr22:+:21311690-21318877	NA	Affy_HUMAN_HTA2.0	TCONS_00029333-XLOC_014161	linc-AIFM3	chr22	 21311690	 21318877	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46804_PI429285431	6.2012663	P	6.1653323	P	1.02522033532916	0	lncRNA	50949-1_{1..2164}	"gi|319999824|ref|NR_037712.1| Homo sapiens RAD51 homolog D (S. cerevisiae) (RAD51D), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|319999824|ref|NR_037712.1| Homo sapiens RAD51 homolog D (S. cerevisiae) (RAD51D), transcript variant 5, non-coding RNA"	Chr17	 33426811	 33428974	-	5892	NR_037712.1	NA	NA	NA	NA	NA	inter
CUST_31679_PI429285431	0.8840594	A	0.88364553	A	1.00028691397556	0	lncRNA	33427-1_{1..3000}	n338204|AK055194|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|596|NULL|0.0275504|-0.3373976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338204|AK055194|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|596|NULL|0.0275504|-0.3373976	chr1	118505992	118508991	+	NA	NA	NA	NA	WDR3	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SPAG17:range=chr1:118506422-1187277805'pad=0,hg19_refFlat_SPAG17:range=chr1:118506422-1187277805'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60chr1:118495992-118503049"	NA	inner
CUST_44944_PI429285431	11.88719	P	10.761956	P	2.18136924696541	0	lncRNA	49456-1_{1..2561}	"gi|224994165|ref|NR_027339.1| Homo sapiens FK506 binding protein 9-like (FKBP9L), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224994165|ref|NR_027339.1| Homo sapiens FK506 binding protein 9-like (FKBP9L), transcript variant 1, non-coding RNA"	Chr7	 55748767	 55751327	-	360132	NR_027339.1	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50"	NA	inter
CUST_46776_PI429285431	0.8990946	A	0.9083051	A	0.993636103803843	0	lncRNA	50923-2_{3001..3494}	"gi|389885062|ref|NR_051988.1| Homo sapiens F-box and WD repeat domain containing 10 (FBXW10), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|389885062|ref|NR_051988.1| Homo sapiens F-box and WD repeat domain containing 10 (FBXW10), transcript variant 3, non-coding RNA"	Chr17	 18650326	 18650819	+	10517	NR_051988.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004692	2.9022534	A	3.0616543	P	0.895396820226742	0	lncRNA	ENST00000417800	NA	NA	NA	NA	XLOC_005480	NA	ENST00000417800	THC2682023	NA	"BROAD Institute lincRNA (XLOC_005480), lincRNA [TCONS_00011383]"	chr6:138293435-138293494	hs|6q23.3	Agilent_HUMAN_G3V2	ENST00000417800	ENST00000417800	chr6	138293435	138293494	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007019	0.8939867	A	0.9836633	A	0.93973337980896	0	lncRNA	TCONS_00018611	NA	NA	NA	NA	XLOC_008959	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008959), lincRNA [TCONS_00018611]"	chr10:118905831-118905772	hs|10q25.3	Agilent_HUMAN_G3V2	TCONS_00018611	TCONS_00018611	chr10	118905772	118905831	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012203	2.0966825	A	1.0312822	A	2.09275046784413	0	lncRNA	TCONS_l2_00017234	NA	NA	NA	NA	XLOC_l2_009216	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009216), lincRNA [TCONS_l2_00017234]"	chr21:40266804-40266745	hs|21q22.2	Agilent_HUMAN_G3V2	TCONS_l2_00017234	TCONS_l2_00017234	chr21	 40266745	 40266804	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33412_PI429285431	3.5322149	P	3.5409026	P	0.993996240266733	0	lncRNA	34992-1_{1..1511}	n340140|CR625922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2600|NULL|-0.7912860|-0.1977866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340140|CR625922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2600|NULL|-0.7912860|-0.1977866	chr10	109673554	109675064	-	NA	NA	NA	NA	LOC100128304	NA	chr10:109673555-109675061	inter
CUST_31863_PI429285431	5.617427	P	5.6630554	P	0.96886771173014	0	lncRNA	33595-1_{1..1356}	n338414|CR594753|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|811|NULL|-1.1592500|-0.4292815	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338414|CR594753|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|811|NULL|-1.1592500|-0.4292815	chr14	 76679330	 76680685	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34559_PI429285431	0.91013634	A	0.91272366	A	0.998208213606124	0	lncRNA	36018-2_{3001..3424}	n341439|BC035264|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3909|NULL|-1.0748000|-0.1902844	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341439|BC035264|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3909|NULL|-1.0748000|-0.1902844	chr13	111465022	111465445	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13898_PI429285431	7.2365446	P	7.260651	P	0.983429542577127	0	lncRNA	15545-1_{1..423}	lnc-AQP2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AQP2-1:6	chr12	 50323178	 50323600	+	lnc-AQP2-1	lnc-AQP2-1:6	XLOC_009748	linc-AQP2-1	NA	NA	NA	inter
CUST_24639_PI429285431	3.254579	P	3.0252392	A	1.17229836424938	0	lncRNA	26188-1_{1..573}	lnc-UTP11L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-UTP11L-1:2	chr1	 38584632	 38585204	+	lnc-UTP11L-1	lnc-UTP11L-1:2	ENSG00000224592.1	RP5-884C9.2	NA	NA	NA	inter
CUST_48181_PI429285431	1.91696	A	2.5636907	A	0.638726095980775	0	lncRNA	52045-1_{1..593}	"gi|310113926|ref|XR_112193.1| PREDICTED: Homo sapiens uncharacterized LOC100134423, transcript variant 2 (LOC100134423), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310113926|ref|XR_112193.1| PREDICTED: Homo sapiens uncharacterized LOC100134423, transcript variant 2 (LOC100134423), misc_RNA"	NA	NA	NA	NA	NA	XR_112193.1	NA	NA	NA	NA	NA	Unknown
CUST_32391_PI429285431	1.072524	A	0.9197848	A	1.11167817819191	0	lncRNA	34068-1_{1..613}	n338982|AF075047|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1410|NULL|-1.3163200|-0.5399626	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338982|AF075047|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1410|NULL|-1.3163200|-0.5399626	chr2	152690494	152691106	-	NA	NA	NA	NA	CACNB4	NA	chr2:152689285-152701098	inner
CUST_2877_PI429285431	1.246115	A	0.90521383	A	1.26654748751681	0	lncRNA	2858-1_{1..349}	"transcript_id ""ENST00000446000.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446000.1"" | genecode_v17"	chr7	 84178522	 84178870	+	ENSG00000235139.2	ENST00000446000.1	AC003984.1	AC003984.1-002	NA	NA	NA	inter
CUST_35898_PI429285431	3.4352345	P	3.8373187	P	0.756764228170854	0	lncRNA	37277-6_{15001..18000}	n344552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_100|NULL|-1.2931500|-0.3004446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n344552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_100|NULL|-1.2931500|-0.3004446	chr15	 25256369	 25259368	+	NA	NA	NA	NA	SNRPN	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr15:25231369-25375009"	NA	inter
CUST_4990_PI429285431	3.7735348	P	4.158424	P	0.765837813174623	0	lncRNA	4934-1_{1..553}	"transcript_id ""ENST00000553301.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553301.1"" | genecode_v17"	chr14	101005276	101005828	+	ENSG00000259031.1	ENST00000553301.1	CTD-2062F14.3	CTD-2062F14.3-001	WDR25	"hg19_refFlat_BEGAIN:range=chr14:101004306-1010342615'pad=0,hg19_refFlat_BEGAIN:range=chr14:101004306-1010342615'pad=0 3'pad=0 strand=- repeatMasking=none,-103.60chr14:100995276-100996640"	NA	inner
CUST_3160_PI429285431	4.674661	P	5.2027607	P	0.693467559603892	0	lncRNA	3139-1_{1..2634}	"transcript_id ""ENST00000520902.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000520902.1"" | genecode_v17"	chr8	 66439243	 66441876	-	ENSG00000254081.1	ENST00000520902.1	CTD-3025N20.2	CTD-3025N20.2-001	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-22.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-26.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70"	NA	inter
CUST_13356_PI429285431	0.9076127	A	0.8950567	A	1.00874113857074	0	lncRNA	14993-1_{1..1488}	lnc-SORBS2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SORBS2-2:1	chr4	186940952	186942439	-	lnc-SORBS2-2	lnc-SORBS2-2:1	XLOC_004212	linc-SORBS2-3	NA	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00"	NA	inter
CUST_42208_PI429285431	8.076632	P	8.335342	P	0.83583495546298	0	lncRNA	44296-1_{1..82}	ENST00000385301 ncrna:miRNA chromosome:GRCh37:7:99691616:99691697:-1 gene:ENSG00000208036 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385301 ncrna:miRNA chromosome:GRCh37:7:99691616:99691697:-1 gene:ENSG00000208036 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 99691616	 99691697	-	ENSG00000208036	ENST00000385301	NA	NA	MCM7	NA	chr7:99690404-99699427	inner
CUST_11240_PI429285431	0.9022515	A	0.9145969	A	0.991479329244411	0	lncRNA	12798-1_{1..491}	lnc-AC092329.1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092329.1-2:6	chr19	 23493350	 23493840	-	lnc-AC092329.1-2	lnc-AC092329.1-2:6	XLOC_013275	linc-ZNF99-5	NA	NA	NA	inter
CUST_27239_PI429285431	0.89319456	A	0.89215803	A	1.00071872600691	0	lncRNA	28788-1_{1..929}	n324381|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042332|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042332|-0.0646622|-0.3727883	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324381|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042332|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042332|-0.0646622|-0.3727883	chr6	135068890	135069818	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50"	NA	inter
CUST_30643_PI429285431	3.4137104	P	3.6813655	P	0.830668585355552	0	lncRNA	32425-1_{1..295}	n336010|X78938|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323694|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323694|-1.0736700|-0.1358954	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336010|X78938|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323694|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323694|-1.0736700|-0.1358954	chrX	153145265	153145559	+	NA	NA	NA	NA	L1CAM	NA	chrX:153135265-153141399	inter
CUST_4945_PI429285431	0.9018307	A	0.9032897	A	0.998989209456826	0	lncRNA	4889-1_{1..361}	"transcript_id ""ENST00000556684.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556684.1"" | genecode_v17"	chr14	 88490962	 88491322	+	ENSG00000258867.1	ENST00000556684.1	RP11-300J18.3	RP11-300J18.3-003	GPR65	NA	chr14:88480962-88481155	inter
CUST_29442_PI429285431	6.0413513	P	6.173185	P	0.912670686373537	0	lncRNA	31198-1_{1..276}	n332829|AF069137|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000065647|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000065647|-0.9121840|-0.1106643	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332829|AF069137|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000065647|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000065647|-0.9121840|-0.1106643	chrX	 53290372	 53290647	+	NA	NA	NA	NA	IQSEC2	NA	chrX:53280372-53300624	inner
CUST_48653_PI429285431	2.4480398	A	2.6875775	A	0.847016688552273	0	lncRNA	52499-2_{3001..3765}	hg19_lincRNAsTranscripts_TCONS_l2_00013793 range=chr2:91966651-91970807 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013793 range=chr2:91966651-91970807 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 91969651	 91970415	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50"	NA	inter
CUST_48262_PI429285431	0.89199233	A	0.93087906	A	0.973405795954375	0	lncRNA	52125-1_{1..1505}	hg19_lincRNAsTranscripts_TCONS_l2_00000053 range=chr1:2508112-2514998 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000053 range=chr1:2508112-2514998 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	  2508112	  2509616	+	NA	NA	NA	NA	MMEL1	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-49.92;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20chr1:2522081-2524998"	NA	inter
CUST_15583_PI429285431	0.88826096	A	1.056919	A	0.889669845754684	0	lncRNA	17268-1_{1..464}	lnc-TOR1AIP2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TOR1AIP2-3:2	chr1	179895930	179896393	-	lnc-TOR1AIP2-3	lnc-TOR1AIP2-3:2	XLOC_001108	linc-TOR1AIP2-1	TOR1AIP1	NA	chr1:179885930-179889211	inter
CUST_15826_PI429285431	3.4518044	P	4.294513	P	0.557595722896649	0	lncRNA	17515-1_{1..533}	lnc-HEATR2-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HEATR2-3:6	chr7	   564002	   564534	+	lnc-HEATR2-3	lnc-HEATR2-3:6	XLOC_005958	linc-HEATR2-2	PDGFA	NA	chr7:554002-559481	inter
CUST_41515_PI429285431	4.1584773	P	5.011765	P	0.553521898759574	0	lncRNA	42746-1_{1..99}	ENST00000582152 ncrna:miRNA chromosome:GRCh37:2:109757946:109758044:-1 gene:ENSG00000264934 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582152 ncrna:miRNA chromosome:GRCh37:2:109757946:109758044:-1 gene:ENSG00000264934 gene_biotype:miRNA transcript_biotype:miRNA	chr2	109757946	109758044	-	ENSG00000264934	ENST00000582152	NA	NA	SH3RF3	NA	chr2:109747946-109768044	inner
CUST_44405_PI429285431	9.059385	P	8.868912	P	1.14113778639973	0	lncRNA	49020-1_{1..810}	"gi|299829291|ref|NR_033874.1| Homo sapiens uncharacterized LOC90024 (FLJ20021), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299829291|ref|NR_033874.1| Homo sapiens uncharacterized LOC90024 (FLJ20021), non-coding RNA"	Chr4	102268934	102269743	+	90024	NR_033874.1	NA	NA	NA	NA	NA	inter
CUST_11278_PI429285431	1.1159569	A	0.93451345	A	1.13401792924081	0	lncRNA	12838-1_{1..265}	lnc-CLLU1OS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLLU1OS-1:1	chr12	 92757367	 92757631	-	lnc-CLLU1OS-1	lnc-CLLU1OS-1:1	XLOC_010152	linc-BTG1-2	NA	NA	NA	inter
CUST_51318_PI429285431	2.3442554	A	2.6883223	A	0.787817352893385	0	lncRNA	54923-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008613 range=chr15:42956889-42980135 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008613 range=chr15:42956889-42980135 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 42956889	 42959888	+	NA	NA	NA	NA	STARD9	NA	chr15:42946889-42990135	inner
LNCA_21_P0006813	0.9091602	A	1.6343161	A	0.604931671165758	0	lncRNA	TCONS_00018086	NA	NA	NA	NA	XLOC_008350	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008350), lincRNA [TCONS_00018086]"	chr10:3609173-3609232	hs|10p15.2	Agilent_HUMAN_G3V2	TCONS_00018086	TCONS_00018086	chr10	  3609173	  3609232	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22346_PI429285431	0.89728117	A	0.90089065	A	0.997501226260253	0	lncRNA	23940-1_{1..274}	lnc-ASPH-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASPH-3:2	chr8	 62213379	 62213652	-	lnc-ASPH-3	lnc-ASPH-3:2	ENSG00000253711.1	RP11-787D18.1	CLVS1	NA	chr8:62203379-62223577	inner
CUST_500_PI429285431	2.6615536	A	0.91169405	A	3.36325822340814	0	lncRNA	491-1_{1..259}	"transcript_id ""ENST00000319701.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000319701.2"" | genecode_v17"	chr1	181205524	181205782	+	ENSG00000179452.2	ENST00000319701.2	RP11-380B22.1	RP11-380B22.1-001	NA	NA	NA	inter
CUST_21833_PI429285431	0.90183586	A	0.9116303	A	0.993234004648302	0	lncRNA	23443-1_{1..798}	lnc-CPVL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPVL-1:1	chr7	 29248429	 29249226	-	lnc-CPVL-1	lnc-CPVL-1:1	ENSG00000235669.1	AC004593.3	CHN2	NA	chr7:29238429-29258586	inner
CUST_50083_PI429285431	1.2687429	A	1.0400355	A	1.17178460423651	0	lncRNA	53817-1_{1..1070}	hg19_lincRNAsTranscripts_TCONS_l2_00027896 range=chr8:95565982-95582860 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027896 range=chr8:95565982-95582860 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 95565982	 95567051	+	NA	NA	NA	NA	KIAA1429	NA	chr8:95555982-95565746	inter
CUST_44001_PI429285431	2.9828367	A	3.4358873	A	0.730496567936723	0	lncRNA	48694-3_{6001..6180}	"gi|365733617|ref|NR_045684.1| Homo sapiens myosin IIIB (MYO3B), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|365733617|ref|NR_045684.1| Homo sapiens myosin IIIB (MYO3B), transcript variant 5, non-coding RNA"	Chr2	171040655	171040834	+	140469	NR_045684.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10"	NA	inter
CUST_48092_PI429285431	3.654028	P	4.2093973	P	0.680482846462138	0	lncRNA	51968-1_{1..767}	"gi|410170149|ref|XR_172474.1| PREDICTED: Homo sapiens uncharacterized LOC101060775 (LOC101060775), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|410170149|ref|XR_172474.1| PREDICTED: Homo sapiens uncharacterized LOC101060775 (LOC101060775), misc_RNA"	NA	NA	NA	NA	NA	XR_172474.1	NA	NA	NA	NA	NA	Unknown
CUST_46863_PI429285431	6.749774	P	6.850593	P	0.93250347064771	0	lncRNA	50993-1_{1..1903}	"gi|312222720|ref|NR_037575.1| Homo sapiens mitochondrial ribosomal protein L10 (MRPL10), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|312222720|ref|NR_037575.1| Homo sapiens mitochondrial ribosomal protein L10 (MRPL10), transcript variant 3, non-coding RNA"	Chr17	 45900638	 45902540	-	124995	NR_037575.1	NA	NA	NA	NA	NA	inter
CUST_35344_PI429285431	5.0644183	P	5.385458	P	0.800492782438405	0	lncRNA	36753-1_{1..1190}	n342385|D90276|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4877|NULL|3.0099000|-0.0947639	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342385|D90276|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4877|NULL|3.0099000|-0.0947639	chr19	 42125343	 42126532	-	NA	NA	NA	NA	CEACAM4	NA	chr19:42115343-42133442	inner
CUST_33546_PI429285431	0.91347593	A	0.9284857	A	0.989649954435565	0	lncRNA	35114-1_{1..1161}	n340295|BC022048|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2756|NULL|-1.2811300|-0.4026773	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340295|BC022048|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2756|NULL|-1.2811300|-0.4026773	chr4	186450179	186451339	-	NA	NA	NA	NA	PDLIM3	NA	chr4:186440179-186456712	inner
CUST_1105_PI429285431	2.1038785	A	1.6141558	A	1.40417495373292	0	lncRNA	1094-1_{1..665}	"transcript_id ""ENST00000599072.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599072.1"" | genecode_v17"	chr2	145425624	145426288	+	ENSG00000226674.3	ENST00000599072.1	AC074093.1	AC074093.1-023	NA	NA	NA	inter
CUST_17806_PI429285431	0.8998227	A	0.89789045	A	1.00134023094749	0	lncRNA	19541-1_{1..1101}	lnc-TUBGCP3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TUBGCP3-4:1	chr13	112926566	112927666	-	lnc-TUBGCP3-4	lnc-TUBGCP3-4:1	XLOC_010732	linc-ANKRD10-10	NA	NA	NA	inter
CUST_28184_PI429285431	0.8944527	A	1.205939	A	0.805811164917282	0	lncRNA	29811-1_{1..243}	n325464|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322565|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322565|-1.2293600|-0.3866992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325464|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322565|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322565|-1.2293600|-0.3866992	chr2	  5734724	  5734966	-	NA	NA	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50"	NA	inter
CUST_13217_PI429285431	0.904873	A	1.1266389	A	0.85751517069209	0	lncRNA	14845-1_{1..295}	lnc-CHST4-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHST4-1:4	chr16	 71551508	 71551802	+	lnc-CHST4-1	lnc-CHST4-1:4	XLOC_011775	linc-CHST4	CHST4	NA	chr16:71560023-71561750	inter
LNCA_21_P0000979	1.9441926	A	2.863861	A	0.528630510774876	0	lncRNA	ENST00000456878	NA	NA	NA	NA	XLOC_000224	NA	ENST00000456878	NA	NA	"BROAD Institute lincRNA (XLOC_000224), lincRNA [TCONS_00000213]"	chr1:60615289-60615348	hs|1p32.1	Agilent_HUMAN_G3V2	ENST00000456878	ENST00000456878	chr1	 60615289	 60615348	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12101_PI429285431	0.8926257	A	2.021993	A	0.457116151380335	0	lncRNA	13697-1_{1..1998}	lnc-AC009365.3.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AC009365.3.1-1:4	chr7	132412194	132414191	+	lnc-AC009365.3.1-1	lnc-AC009365.3.1-1:4	XLOC_006254	linc-EXOC4-4	NA	NA	NA	inter
LNCA_21_P0010597	3.1676068	P	3.7401285	P	0.672440395833867	0	lncRNA	TCONS_l2_00000982	NA	NA	NA	NA	XLOC_l2_000738	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000738), lincRNA [TCONS_l2_00000982]"	chr1:1870333-1870274	hs|1p36.33	Agilent_HUMAN_G3V2	TCONS_l2_00000982	TCONS_l2_00000982	chr1	  1870274	  1870333	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2485_PI429285431	0.8981827	A	0.9021268	A	0.997269891747553	0	lncRNA	2477-1_{1..405}	"transcript_id ""ENST00000434947.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434947.1"" | genecode_v17"	chr6	 14394557	 14394961	+	ENSG00000234540.1	ENST00000434947.1	RP3-448I9.1	RP3-448I9.1-001	NA	NA	NA	inter
LNCA_19_P00803697	4.356452	P	4.499936	P	0.905330208957521	0	lncRNA	TCONS_00018347	NA	NA	NA	NA	XLOC_008632	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008632), lincRNA [TCONS_00018347]"	chr10:119250193-119250252	hs|10q26.11	Agilent_HUMAN_G3V2	TCONS_00018347	TCONS_00018347	chr10	119250193	119250252	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23059_PI429285431	0.89419806	A	0.92648506	A	0.977868923462709	0	lncRNA	24630-1_{1..338}	lnc-TNFRSF21-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNFRSF21-1:1	chr6	 47496159	 47496496	-	lnc-TNFRSF21-1	lnc-TNFRSF21-1:1	ENSG00000225515.1	RP11-385F7.2	CD2AP	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00chr6:47486159-47506397"	NA	inner
CUST_41023_PI429285431	1.1200557	A	1.0160856	A	1.07472689880148	0	lncRNA	41683-1_{1..526}	n411636|NR_040098|lncRNA|Homosapiens||RefGeneNoncode|NR_040098||1.0932600|-0.4256378	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n411636|NR_040098|lncRNA|Homosapiens||RefGeneNoncode|NR_040098||1.0932600|-0.4256378	chr12	 20167618	 20168143	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21768_PI429285431	0.8919147	A	1.5927079	A	0.615233855421435	0	lncRNA	23378-1_{1..797}	lnc-ALX3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALX3-1:1	chr1	110714702	110715498	-	lnc-ALX3-1	lnc-ALX3-1:1	ENSG00000227091.1	RP5-1028L10.1	SLC6A17	"hg19_refFlat_SLC6A17:range=chr1:110709552-1107410665'pad=0,hg19_refFlat_SLC6A17:range=chr1:110709552-1107410665'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.80chr1:110704702-110725111"	NA	inner
CUST_26278_PI429285431	7.026547	P	7.1781745	P	0.900234337886345	0	lncRNA	27784-1_{1..446}	lnc-TNFRSF10A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNFRSF10A-1:3	chr8	 23087548	 23087993	-	lnc-TNFRSF10A-1	lnc-TNFRSF10A-1:3	ENSG00000250714.2	RP11-1149O23.4	TNFRSF10A	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.81;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80chr8:23077548-23082680"	NA	inter
CUST_15672_PI429285431	0.90411776	A	2.1413825	A	0.424176105789993	0	lncRNA	17359-1_{1..442}	lnc-WFDC8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WFDC8-1:1	chr20	 44217863	 44218304	-	lnc-WFDC8-1	lnc-WFDC8-1:1	XLOC_013759	linc-WFDC8	WFDC8	NA	chr20:44207863-44207965	inter
LNCA_21_P0013847	0.9010281	A	0.9033429	A	0.998396789423738	0	lncRNA	ENST00000444482	NA	NA	NA	NA	XLOC_l2_015561	NA	ENST00000444482	THC2641661	NA	"BROAD Institute lincRNA (XLOC_l2_015561), lincRNA [TCONS_l2_00030715]"	chrX:73169334-73169393	hs|Xq13.2	Agilent_HUMAN_G3V2	ENST00000444482	ENST00000444482	chrX	 73169334	 73169393	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22104_PI429285431	2.8593512	A	2.5157366	A	1.26893185964741	0	lncRNA	23709-1_{1..434}	lnc-AC092295.7.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC092295.7.1-1:1	chr19	 37026000	 37026433	+	lnc-AC092295.7.1-1	lnc-AC092295.7.1-1:1	ENSG00000228629.2	AC092295.4	ZNF529	NA	chr19:37034517-37036137	inter
CUST_4300_PI429285431	7.5243216	P	6.316431	P	2.30999639474229	0	lncRNA	4255-1_{1..376}	"transcript_id ""ENST00000536217.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536217.1"" | genecode_v17"	chr12	 66421505	 66421880	-	ENSG00000256259.1	ENST00000536217.1	RP11-366L20.4	RP11-366L20.4-001	NA	NA	NA	inter
CUST_29944_PI429285431	8.583732	P	8.18564	P	1.3177639822586	0	lncRNA	31708-1_{1..201}	n334134|M65208|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196168|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196168|-0.0910004|-0.1564575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334134|M65208|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196168|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196168|-0.0910004|-0.1564575	chr12	 48258835	 48259035	-	NA	NA	NA	NA	VDR	NA	chr12:48248835-48282827	inner
CUST_50810_PI429285431	0.89143264	A	0.8856941	A	1.00398557418184	0	lncRNA	54461-1_{1..873}	hg19_lincRNAsTranscripts_TCONS_l2_00005001 range=chr11:49426360-49438313 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005001 range=chr11:49426360-49438313 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	 49426360	 49427232	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33873_PI429285431	2.4812398	A	2.8850448	A	0.755862122375225	0	lncRNA	35417-1_{1..978}	n340661|BC030152|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3123|NULL|-0.9964860|-0.1920153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340661|BC030152|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3123|NULL|-0.9964860|-0.1920153	chr5	139780102	139781079	-	NA	NA	NA	NA	ANKHD1	NA	chr5:139781399-139791013	inter
CUST_32527_PI429285431	6.935752	P	7.3984385	P	0.725633768194786	0	lncRNA	34194-1_{1..2635}	n339135|AK093371|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1565|NULL|1.0667500|-0.1975178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339135|AK093371|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1565|NULL|1.0667500|-0.1975178	chr16	 27458989	 27461623	-	NA	NA	NA	NA	GTF3C1	"hg19_refFlat_IL21R:range=chr16:27414492-274606045'pad=0,hg19_refFlat_IL21R:range=chr16:27414492-274606045'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_IL21R:range=chr16:27441393-274606045'pad=0,hg19_refFlat_IL21R:range=chr16:27441393-274606045'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40chr16:27471934-27474714"	NA	inter
CUST_28287_PI429285431	0.8928027	A	0.90150815	A	0.993984010845942	0	lncRNA	29923-1_{1..2243}	n325583|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257641|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257641|-0.1561630|-0.1905041	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325583|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257641|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257641|-0.1561630|-0.1905041	chr16	 87753128	 87755370	+	NA	NA	NA	NA	KLHDC4	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr16:87743128-87767584"	NA	inner
CUST_39572_PI429285431	0.90248	A	1.0862033	A	0.880427857997373	0	lncRNA	40516-1_{1..342}	n387545|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011hjg.1||-1.2317100|-0.4655172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387545|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011hjg.1||-1.2317100|-0.4655172	chr6	  1019117	  1019458	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33419_PI429285431	1.2051754	A	1.4651945	A	0.835076863679769	0	lncRNA	34998-2_{3001..3830}	n340147|BC045633|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2607|NULL|0.6375160|-0.1740008	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340147|BC045633|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2607|NULL|0.6375160|-0.1740008	chr10	115803690	115804519	-	NA	NA	NA	NA	ADRB1	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ADRB1:range=chr10:115803892-1158053255'pad=0,hg19_refFlat_ADRB1:range=chr10:115803892-1158053255'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.10chr10:115803806-115806667"	NA	inner
CUST_49930_PI429285431	1.2240607	A	2.843114	A	0.325549019844648	0	lncRNA	53680-1_{1..1521}	hg19_lincRNAsTranscripts_TCONS_l2_00026126 range=chr7:99195689-99208643 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026126 range=chr7:99195689-99208643 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 99195689	 99197209	+	NA	NA	NA	NA	ZNF498	NA	chr7:99214571-99218643	inner
CUST_24504_PI429285431	2.374116	A	3.2087784	P	0.560714234432225	0	lncRNA	26055-1_{1..433}	lnc-SLC25A5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC25A5-1:1	chrX	118557478	118557910	+	lnc-SLC25A5-1	lnc-SLC25A5-1:1	ENSG00000237903.1	RP3-404F18.5	SLC25A43	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20chrX:118547478-118567510"	NA	inner
CUST_12179_PI429285431	0.89669526	A	0.9022055	A	0.996187877338619	0	lncRNA	13779-1_{1..1012}	lnc-UQCRFS1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UQCRFS1-5:1	chr19	 28491139	 28492150	-	lnc-UQCRFS1-5	lnc-UQCRFS1-5:1	XLOC_013285	linc-ZNF681-7	NA	NA	NA	inter
CUST_32593_PI429285431	0.88440776	A	0.88413996	A	1.00018564204431	0	lncRNA	34254-1_{1..2833}	n339212|AK127174|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1644|NULL|-0.0308616|-0.2907380	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339212|AK127174|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1644|NULL|-0.0308616|-0.2907380	chr16	 51209976	 51212808	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10"	NA	inter
CUST_5832_PI429285431	1.106111	A	0.9126398	A	1.14351175789205	0	lncRNA	5761-1_{1..376}	"transcript_id ""ENST00000587054.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587054.1"" | genecode_v17"	chr17	 35041203	 35041578	+	ENSG00000267499.1	ENST00000587054.1	CTD-3194G12.1	CTD-3194G12.1-001	NA	NA	NA	inter
CUST_28155_PI429285431	0.88495463	A	0.8798928	A	1.00351475551099	0	lncRNA	29780-1_{1..2183}	n325431|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323583|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323583|-1.3344000|-0.3483527	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325431|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323583|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323583|-1.3344000|-0.3483527	chr2	 12064704	 12066886	+	NA	NA	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80"	NA	inter
CUST_27603_PI429285431	2.2049475	A	1.7091913	A	1.41005965537984	0	lncRNA	29182-1_{1..1198}	n324806|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194072|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194072|-1.1238300|-0.2395982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324806|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194072|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194072|-1.1238300|-0.2395982	chr21	 34474918	 34476115	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34810_PI429285431	3.29337	P	3.0600238	P	1.17555839044698	0	lncRNA	36245-1_{1..3000}	n341717|BX538228|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4189|NULL|-1.1893500|-0.2872229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341717|BX538228|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4189|NULL|-1.1893500|-0.2872229	chr9	 91620685	 91623684	-	NA	NA	NA	NA	S1PR3	NA	chr9:91610685-91619925	inner
CUST_24024_PI429285431	0.88786966	A	0.8928845	A	0.996530012164338	0	lncRNA	25577-1_{1..3000}	lnc-CERS5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CERS5-1:1	chr12	 50585116	 50588115	-	lnc-CERS5-1	lnc-CERS5-1:1	ENSG00000257298.1	RP3-405J10.3	LIMA1	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr12:50575116-50595146"	NA	inner
CUST_47715_PI429285431	8.459794	P	8.7869	P	0.797133906090202	0	lncRNA	51678-1_{1..3000}	"gi|385137104|ref|NR_047642.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 72, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137104|ref|NR_047642.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 72, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047642.1	NA	NA	NA	NA	NA	inter
CUST_19879_PI429285431	6.4257336	P	5.8904676	P	1.44920933100975	0	lncRNA	21535-1_{1..754}	lnc-CXorf26-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CXorf26-2:1	chrX	 75108853	 75109606	+	lnc-CXorf26-2	lnc-CXorf26-2:1	ENSG00000230028.1	RP11-212D3.3	NA	NA	NA	inter
CUST_33867_PI429285431	5.780937	P	5.633325	P	1.10773439248776	0	lncRNA	35411-1_{1..1304}	n340655|BC005066|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3117|NULL|-1.1764800|-0.2484465	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340655|BC005066|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3117|NULL|-1.1764800|-0.2484465	chr17	 38804773	 38806076	+	NA	NA	NA	NA	SMARCE1	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70chr17:38794773-38804103"	NA	inter
CUST_11544_PI429285431	5.8295193	P	5.97216	P	0.905859557240789	0	lncRNA	13117-1_{1..346}	lnc-QPCT-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-QPCT-2:1	chr2	 37764138	 37764483	+	lnc-QPCT-2	lnc-QPCT-2:1	XLOC_001429	linc-FAM82A1-4	NA	NA	NA	inter
CUST_51747_PI429285431	5.045263	P	4.981365	P	1.04528619480036	0	lncRNA	55300-1_{1..737}	hg19_lincRNAsTranscripts_TCONS_l2_00012520 range=chr19:37742797-37756438 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012520 range=chr19:37742797-37756438 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 37742797	 37743533	+	NA	NA	NA	NA	ZNF383	NA	chr19:37732797-37734574	inter
CUST_47531_PI429285431	1.8391807	A	2.3138602	A	0.719626639949207	0	lncRNA	51542-1_{1..574}	"gi|397139776|ref|XR_109732.2| PREDICTED: Homo sapiens uncharacterized LOC100506737 (LOC100506737), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139776|ref|XR_109732.2| PREDICTED: Homo sapiens uncharacterized LOC100506737 (LOC100506737), misc_RNA"	Chr22	 46000312	 46000885	-	100506737	XR_109732.3	NA	NA	NA	NA	NA	inter
CUST_38906_PI429285431	6.1932893	P	4.4412007	P	3.36845867469596	0	lncRNA	39895-1_{1..2621}	n384968|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pju.1||2.1575800|-0.3051229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384968|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pju.1||2.1575800|-0.3051229	chr6	 83874594	 83877214	-	NA	NA	NA	NA	PGM3	NA	chr6:83874592-83887215	inner
CUST_31544_PI429285431	5.8397	P	7.3382277	P	0.353914383278336	0	lncRNA	33303-1_{1..415}	n338032|X77690|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|419|NULL|4.6709600|-0.2556518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338032|X77690|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|419|NULL|4.6709600|-0.2556518	chr22	 33256005	 33256419	-	NA	NA	NA	NA	SYN3	NA	chr22:33246005-33266421	inner
CUST_20375_PI429285431	3.9637642	P	3.8039541	P	1.11714008075372	0	lncRNA	22017-1_{1..759}	lnc-INPP4B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-INPP4B-2:2	chr4	144105661	144106419	-	lnc-INPP4B-2	lnc-INPP4B-2:2	ENSG00000250326.1	RP11-284M14.1	USP38	NA	chr4:144106070-144115982	inter
LNCA_21_P0002536	0.8977266	A	0.8934561	A	1.00296447041225	0	lncRNA	TCONS_00004569	NA	NA	NA	NA	XLOC_002476	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002476), lincRNA [TCONS_00004569]"	chr2:214023685-214023626	hs|2q34	Agilent_HUMAN_G3V2	TCONS_00004569	TCONS_00004569	chr2	214023626	214023685	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1924_PI429285431	0.88605905	M	0.8885477	A	0.998276486227736	0	lncRNA	1915-1_{1..138}	"transcript_id ""ENST00000508388.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508388.1"" | genecode_v17"	chr4	142491084	142491221	-	ENSG00000250141.1	ENST00000508388.1	RP11-208N20.1	RP11-208N20.1-001	NA	NA	NA	inter
CUST_171_PI429285431	3.2986388	P	3.6910434	P	0.761858723947079	0	lncRNA	162-1_{1..3000}	"transcript_id ""ENST00000412427.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000412427.1"" | genecode_v17"	chr1	 17516278	 17519277	+	ENSG00000204362.5	ENST00000412427.1	RP11-380J14.1	RP11-380J14.1-001	PADI1	NA	chr1:17531621-17534112	inter
LNCA_21_P0010253	3.2340426	P	4.024985	P	0.577966428286851	0	lncRNA	TCONS_00029031	NA	NA	NA	NA	XLOC_013952	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013952), lincRNA [TCONS_00029031]"	chr21:43474337-43474396	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029031	TCONS_00029031	chr21	 43474337	 43474396	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12851_PI429285431	1.2594973	A	1.0616442	A	1.14699022792601	0	lncRNA	14477-1_{1..1388}	lnc-IL28RA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL28RA-1:1	chr1	 24526091	 24527478	-	lnc-IL28RA-1	lnc-IL28RA-1:1	XLOC_000741	linc-IL28RA-1	NA	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_C11orf44:range=chr11:130542874-1305840925'pad=0,hg19_refFlat_C11orf44:range=chr11:130542874-1305840925'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.32;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60"	NA	inter
CUST_13378_PI429285431	1.7247678	A	1.1685772	A	1.47038158133306	0	lncRNA	15013-1_{1..690}	lnc-SLC15A4-10:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SLC15A4-10:2	chr12	128120947	128121636	-	lnc-SLC15A4-10	lnc-SLC15A4-10:2	XLOC_010252	linc-DHX37-13	NA	NA	NA	inter
CUST_46244_PI429285431	2.8522818	P	3.021326	P	0.889431743506414	0	lncRNA	50483-1_{1..2418}	"gi|390608666|ref|NR_047001.1| Homo sapiens POU4F1 antisense RNA 1 (POU4F1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|390608666|ref|NR_047001.1| Homo sapiens POU4F1 antisense RNA 1 (POU4F1-AS1), non-coding RNA"	Chr13	 78628990	 78631407	+	100874222	NR_047001.1	NA	NA	NA	"hg19_refFlat_RNF219:range=chr13:79189715-792332555'pad=0,hg19_refFlat_RNF219:range=chr13:79189715-792332555'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10"	NA	inter
CUST_3126_PI429285431	1.459244	A	1.9838169	A	0.695164878269361	0	lncRNA	3105-1_{1..877}	"transcript_id ""ENST00000518750.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518750.1"" | genecode_v17"	chr8	 58943893	 58944769	-	ENSG00000253523.1	ENST00000518750.1	RP11-1112C15.2	RP11-1112C15.2-001	FAM110B	NA	chr8:58933893-58955241	inner
CUST_19014_PI429285431	6.147377	P	5.8922725	P	1.19342218410077	0	lncRNA	20704-1_{1..703}	lnc-AL592284.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL592284.1-1:5	chr1	144603131	144603833	+	lnc-AL592284.1-1	lnc-AL592284.1-1:5	ENSG00000225241	NBPF8	NA	NA	NA	inter
LNCA_21_P0005225	1.6829004	A	0.8982129	A	1.722719123412	0	lncRNA	ENST00000415356	NA	BC031962	NA	Hs.147593	XLOC_006049	NA	ENST00000415356	THC2630851	NA	"BROAD Institute lincRNA (XLOC_006049), lincRNA [TCONS_00012996]"	chr7:36822304-36822363	hs|7p14.2	Agilent_HUMAN_G3V2	ENST00000415356	ENST00000415356	chr7	 36822304	 36822363	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003661	0.90338033	A	1.5406144	A	0.642944418760734	0	lncRNA	TCONS_00008278	NA	NA	NA	NA	XLOC_003721	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003721), lincRNA [TCONS_00008278]"	chr4:147033661-147033720	hs|4q31.22	Agilent_HUMAN_G3V2	TCONS_00008278	TCONS_00008278	chr4	147033661	147033720	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15738_PI429285431	0.91757613	A	0.9203167	A	0.99810218476441	0	lncRNA	17424-1_{1..415}	lnc-RP11-152O14.5.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-152O14.5.1-1:3	chr16	 52112309	 52112723	-	lnc-RP11-152O14.5.1-1	lnc-RP11-152O14.5.1-1:3	XLOC_011940	linc-SALL1-3	LOC388276	NA	chr16:52102309-52107847	inter
CUST_10197_PI429285431	1.0340902	A	1.2489208	A	0.861647327654012	0	lncRNA	11722-1_{1..217}	lnc-NSA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NSA2-1:1	chr5	 74271427	 74271643	+	lnc-NSA2-1	lnc-NSA2-1:1	XLOC_004430	linc-HMGCR	NA	NA	NA	inter
CUST_15231_PI429285431	0.9193749	A	0.9034409	A	1.01110582401326	0	lncRNA	16901-1_{1..609}	lnc-ADARB1-3:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADARB1-3:16	chr21	 46720808	 46721416	+	lnc-ADARB1-3	lnc-ADARB1-3:16	XLOC_013981	linc-COL18A1-4	NA	NA	NA	inter
CUST_42873_PI429285431	6.763421	P	7.035897	P	0.827897461386905	0	lncRNA	45939-1_{1..145}	ENST00000391227 ncrna:snoRNA chromosome:GRCh37:5:171679338:171679482:-1 gene:ENSG00000212529 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391227 ncrna:snoRNA chromosome:GRCh37:5:171679338:171679482:-1 gene:ENSG00000212529 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	171679338	171679482	-	ENSG00000212529	ENST00000391227	NA	NA	UBTD2	NA	chr5:171669338-171689482	inner
CUST_28671_PI429285431	1.1415038	A	1.1601063	A	0.987188504522398	0	lncRNA	30363-1_{1..1404}	n326050|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047094|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047094|-1.1752000|-0.4786429	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326050|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047094|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047094|-1.1752000|-0.4786429	chr10	 20039262	 20040665	-	NA	NA	NA	NA	PLXDC2	NA	chr10:20036608-20067485	inter
CUST_16055_PI429285431	2.8924239	A	3.3075986	P	0.749928678171637	0	lncRNA	17755-1_{1..1001}	lnc-PITRM1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PITRM1-2:2	chr10	  3108945	  3109945	-	lnc-PITRM1-2	lnc-PITRM1-2:2	XLOC_008691	linc-ADARB2-7	PFKP	NA	chr10:3109712-3118996	inter
CUST_15999_PI429285431	0.8878336	A	0.88729805	A	1.00037128388135	0	lncRNA	17696-1_{1..675}	lnc-RAB11FIP2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB11FIP2-2:3	chr10	119588316	119588990	-	lnc-RAB11FIP2-2	lnc-RAB11FIP2-2:3	XLOC_008964	linc-PDZD8-4	NA	NA	NA	inter
LNCA_33_P3372954	0.9043576	A	0.899069	A	1.00367250536155	0	lncRNA	XR_111130	XR_111130	XR_111130	   387720	Hs.527750	LOC387720	uncharacterized LOC387720	NA	THC2486998	NA	"PREDICTED: Homo sapiens hypothetical LOC387720 (LOC387720), miscRNA [XR_111130]"	chr10:129532904-129532845	hs|10q26.2	Agilent_HUMAN_G3V2	XR_111130	XR_111130	chr10	129532845	129532904	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42924_PI429285431	9.964392	P	10.08941	P	0.916992602138236	0	lncRNA	46031-1_{1..137}	ENST00000408564 ncrna:snoRNA chromosome:GRCh37:12:49048165:49048301:-1 gene:ENSG00000221491 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408564 ncrna:snoRNA chromosome:GRCh37:12:49048165:49048301:-1 gene:ENSG00000221491 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 49048165	 49048301	-	ENSG00000221491	ENST00000408564	NA	NA	C12orf41	NA	chr12:49046994-49058301	inner
CUST_18643_PI429285431	5.9396677	P	5.163132	P	1.71301252501729	0	lncRNA	20347-1_{1..2869}	lnc-GTF2F2-2:24	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2F2-2:24	chr13	 45965167	 45968035	+	lnc-GTF2F2-2	lnc-GTF2F2-2:24	ENSG00000170919	XXyac-R12DG2.2	SLC25A30	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_RCN1:range=chr11:32112743-321260185'pad=0,hg19_refFlat_RCN1:range=chr11:32112743-321260185'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10chr13:45967451-45975610"	NA	inter
CUST_18823_PI429285431	3.588546	P	3.856062	P	0.830748679600984	0	lncRNA	20517-1_{1..499}	lnc-SENP5-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SENP5-3:1	chr3	197029399	197029897	+	lnc-SENP5-3	lnc-SENP5-3:1	ENSG00000227375	AC092937.2	DLG1	NA	chr3:197019399-197025447	inter
LNCA_21_P0005752	0.8983907	A	0.91851443	A	0.986148125745578	0	lncRNA	TCONS_00014835	NA	NA	NA	NA	XLOC_006903	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006903), lincRNA [TCONS_00014835]"	chr8:112769122-112769181	hs|8q23.3	Agilent_HUMAN_G3V2	TCONS_00014835	TCONS_00014835	chr8	112769122	112769181	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28570_PI429285431	0.9031904	A	0.9266992	A	0.983836987819689	0	lncRNA	30248-1_{1..2029}	n325927|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049141|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049141|-1.0420000|-0.3720665	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325927|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049141|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049141|-1.0420000|-0.3720665	chr10	 86943156	 86945184	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1824_PI429285431	0.8914163	A	1.3596252	A	0.722861470476926	0	lncRNA	1813-1_{1..525}	"transcript_id ""ENST00000517407.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517407.1"" | genecode_v17"	chr4	 98041852	 98042376	+	ENSG00000253170.1	ENST00000517407.1	RP11-431J17.1	RP11-431J17.1-001	NA	NA	NA	inter
CUST_49457_PI429285431	0.9145489	A	0.92820126	A	0.990581539336559	0	lncRNA	53256-2_{3001..4542}	hg19_lincRNAsTranscripts_TCONS_l2_00024300 range=chr6:78470911-78636743 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024300 range=chr6:78470911-78636743 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 78473911	 78475452	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28128_PI429285431	0.9035876	A	0.9109465	A	0.994912186206573	0	lncRNA	29752-1_{1..564}	n325403|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323731|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323731|-0.9842640|-0.1869599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325403|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323731|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323731|-0.9842640|-0.1869599	chr2	 16772871	 16773434	+	NA	NA	NA	NA	FAM49A	NA	chr2:16762871-16805287	inner
CUST_29880_PI429285431	1.3711252	A	1.7088283	A	0.79130013035532	0	lncRNA	31643-1_{1..390}	n333903|L38562|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193387|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193387|-0.7669130|-0.1440863	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333903|L38562|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193387|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193387|-0.7669130|-0.1440863	chr22	 22677042	 22677431	-	NA	NA	NA	NA	ZNF280B	"hg19_refFlat_IGLL5:range=chr22:23230234-232378745'pad=0,hg19_refFlat_IGLL5:range=chr22:23230234-232378745'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30;hg19_refFlat_IGLL1:range=chr22:23915453-239223775'pad=0,hg19_refFlat_IGLL1:range=chr22:23915453-239223775'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_IGLL1:range=chr22:23915724-239223775'pad=0,hg19_refFlat_IGLL1:range=chr22:23915724-239223775'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_IGLL5:range=chr22:23230340-232378745'pad=0,hg19_refFlat_IGLL5:range=chr22:23230340-232378745'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30chr22:22804696-22863505"	NA	inter
CUST_43812_PI429285431	5.05489	P	5.256329	P	0.869682675297709	0	lncRNA	48537-2_{3001..4695}	"gi|300796059|ref|NR_034113.1| Homo sapiens DNAJC27 antisense RNA 1 (DNAJC27-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300796059|ref|NR_034113.1| Homo sapiens DNAJC27 antisense RNA 1 (DNAJC27-AS1), non-coding RNA"	Chr2	 25197981	 25199675	+	729723	NR_034113.1	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80"	NA	inter
CUST_31357_PI429285431	0.901744	A	0.90707713	A	0.996310180154016	0	lncRNA	33137-2_{3001..5010}	n337823|AL832136|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|206|NULL|-0.4031620|-0.3340190	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337823|AL832136|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|206|NULL|-0.4031620|-0.3340190	chrX	107966178	107968187	-	NA	NA	NA	NA	IRS4	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20chrX:107975727-107978174"	NA	inter
CUST_41880_PI429285431	0.9259152	A	0.91797894	A	1.00551615450546	0	lncRNA	43555-1_{1..84}	ENST00000582265 ncrna:miRNA chromosome:GRCh37:2:227523426:227523509:-1 gene:ENSG00000263363 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582265 ncrna:miRNA chromosome:GRCh37:2:227523426:227523509:-1 gene:ENSG00000263363 gene_biotype:miRNA transcript_biotype:miRNA	chr2	227523426	227523509	-	ENSG00000263363	ENST00000582265	NA	NA	NA	NA	NA	inter
CUST_5449_PI429285431	3.8687408	P	4.1866455	P	0.802234157724881	0	lncRNA	5383-1_{1..352}	"transcript_id ""ENST00000570859.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000570859.1"" | genecode_v17"	chr16	 20220247	 20220598	+	ENSG00000263253.1	ENST00000570859.1	RP11-204E4.3	RP11-204E4.3-001	NA	NA	NA	inter
LNCA_21_P0009088	3.7874348	P	3.6349516	P	1.11148093320426	0	lncRNA	TCONS_00024776	NA	NA	NA	NA	XLOC_012051	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012051), lincRNA [TCONS_00024776]"	chr16:87187978-87172936	hs|16q24.2	Agilent_HUMAN_G3V2	TCONS_00024776	TCONS_00024776	chr16	 87172936	 87187978	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3456_PI429285431	1.8150619	A	1.1490875	A	1.58663953189971	0	lncRNA	3427-1_{1..595}	"transcript_id ""ENST00000585511.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585511.1"" | genecode_v17"	chr9	 84891964	 84892558	+	ENSG00000228430.4	ENST00000585511.1	RP11-15B24.5	RP11-15B24.5-006	NA	NA	NA	inter
CUST_47749_PI429285431	1.6417267	A	1.6562121	A	0.990009723515127	0	lncRNA	51693-3_{6001..6872}	"gi|385137069|ref|NR_047607.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 37, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|385137069|ref|NR_047607.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 37, non-coding RNA"	ChrY	 15366259	 15367130	-	7404	NR_047607.1	NA	NA	NA	NA	NA	inter
CUST_25438_PI429285431	4.040607	P	3.9259996	P	1.08268037607425	0	lncRNA	26968-1_{1..554}	lnc-RNF11-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF11-1:2	chr1	 51796544	 51797097	+	lnc-RNF11-1	lnc-RNF11-1:2	ENSG00000261664.1	RP11-275F13.1	TTC39A	NA	chr1:51786544-51806953	inner
CUST_38915_PI429285431	4.550116	P	3.4066958	P	2.20904100690318	0	lncRNA	39904-1_{1..2138}	n384996|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pup.1||-0.1552930|-0.3105278	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384996|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pup.1||-0.1552930|-0.3105278	chr6	111347327	111349464	+	NA	NA	NA	NA	RPF2	NA	chr6:111337327-111346794	inter
CUST_19859_PI429285431	9.679455	P	9.868104	P	0.877426996069485	0	lncRNA	21516-1_{1..447}	lnc-SNRPD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNRPD1-2:1	chr18	 19262112	 19262558	+	lnc-SNRPD1-2	lnc-SNRPD1-2:1	ENSG00000265656.1	RP11-13N13.6	ABHD3	NA	chr18:19252112-19272522	inner
CUST_4010_PI429285431	1.1866403	A	1.3358384	A	0.901751548160525	0	lncRNA	3971-1_{1..618}	"transcript_id ""ENST00000541254.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000541254.1"" | genecode_v17"	chr11	 72887739	 72888356	+	ENSG00000256568.1	ENST00000541254.1	RP11-800A3.3	RP11-800A3.3-001	NA	NA	NA	inter
CUST_5544_PI429285431	3.989341	P	4.4719133	P	0.715700404425192	0	lncRNA	5474-1_{1..1658}	"transcript_id ""ENST00000561513.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000561513.1"" | genecode_v17"	chr16	 52116977	 52118634	-	ENSG00000260268.1	ENST00000561513.1	RP11-152O14.2	RP11-152O14.2-001	LOC388276	NA	chr16:52106977-52107847	inter
LNCA_21_P0002169	2.3202348	A	3.7899544	P	0.361052465666259	0	lncRNA	TCONS_00003571	NA	NA	NA	NA	XLOC_001342	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001342), lincRNA [TCONS_00003571]"	chr2:10597139-10597198	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_00003571	TCONS_00003571	chr2	 10597139	 10597198	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008372	0.9049981	A	1.776487	A	0.546582471673872	0	lncRNA	TCONS_00022588	NA	NA	NA	NA	XLOC_010897	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010897), lincRNA [TCONS_00022588]"	chr14:88551013-88551072	hs|14q31.3	Agilent_HUMAN_G3V2	TCONS_00022588	TCONS_00022588	chr14	 88551013	 88551072	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19636_PI429285431	0.91818637	A	1.2930558	A	0.771175204161728	0	lncRNA	21292-1_{1..371}	lnc-CD38-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CD38-3:2	chr4	 16435680	 16436050	+	lnc-CD38-3	lnc-CD38-3:2	ENSG00000248138.1	RP11-446J8.1	NA	NA	NA	inter
CUST_46278_PI429285431	0.9061754	A	0.9272398	A	0.985505344301338	0	lncRNA	50516-1_{1..3000}	"gi|337298457|ref|NR_038970.1| Homo sapiens long intergenic non-protein coding RNA 641 (LINC00641), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|337298457|ref|NR_038970.1| Homo sapiens long intergenic non-protein coding RNA 641 (LINC00641), transcript variant 1, non-coding RNA"	Chr14	 21668238	 21671237	-	283624	NR_038970.1	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30"	NA	inter
CUST_37432_PI429285431	3.5398693	P	3.9582212	P	0.748278952060437	0	lncRNA	38535-1_{1..882}	n345884|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1433|NULL|-1.3161500|-0.2166684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345884|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1433|NULL|-1.3161500|-0.2166684	chr20	 45085823	 45086704	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002465	0.89944744	A	0.9011418	A	0.998826248528902	0	lncRNA	TCONS_00004318	NA	NA	NA	NA	XLOC_002178	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002178), lincRNA [TCONS_00004318]"	chr2:79146638-79146579	hs|2p12	Agilent_HUMAN_G3V2	TCONS_00004318	TCONS_00004318	chr2	 79146579	 79146638	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45984_PI429285431	2.3069282	A	1.871918	A	1.35192039120837	0	lncRNA	50274-1_{1..2153}	"gi|380422400|ref|NR_046445.1| Homo sapiens C-type lectin domain family 2, member D pseudogene (LOC374443), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|380422400|ref|NR_046445.1| Homo sapiens C-type lectin domain family 2, member D pseudogene (LOC374443), transcript variant 3, non-coding RNA"	Chr12	  9800643	  9802795	+	374443	NR_046445.1	NA	NA	NA	NA	NA	inter
LNCA_33_P3348474	4.994154	P	5.445213	P	0.731505694314984	0	lncRNA	XR_109110	XR_109110	XR_109110	100128840	Hs.679106	LOC100128840	uncharacterized LOC100128840	NA	THC2490764	NA	"PREDICTED: Homo sapiens hypothetical LOC100128840 (LOC100128840), miscRNA [XR_109110]"	chr12:131473836-131473777	hs|12q24.33	Agilent_HUMAN_G3V2	XR_109110	XR_109110	chr12	131473777	131473836	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23658_PI429285431	1.3759962	A	1.4723611	A	0.935386881060611	0	lncRNA	25224-1_{1..3000}	lnc-DHRS7B-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DHRS7B-5:1	chr17	 20805531	 20808530	+	lnc-DHRS7B-5	lnc-DHRS7B-5:1	ENSG00000233098.3	RP11-344E13.3	CCDC144NL	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_RNASEH1:range=chr2:3593375-36058505'pad=0,hg19_refFlat_RNASEH1:range=chr2:3593375-36058505'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr17:20795531-20799453"	NA	inter
CUST_50033_PI429285431	8.094916	P	8.403606	P	0.807374540977127	0	lncRNA	53769-1_{1..702}	hg19_lincRNAsTranscripts_TCONS_l2_00027709 range=chr8:32899163-32902459 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027709 range=chr8:32899163-32902459 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 32899163	 32899864	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10150_PI429285431	0.90980417	A	1.3332876	A	0.745622122349078	0	lncRNA	11674-1_{1..489}	lnc-CD83-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD83-5:2	chr6	 14662440	 14662928	+	lnc-CD83-5	lnc-CD83-5:2	XLOC_005183	linc-JARID2-1	NA	NA	NA	inter
CUST_12601_PI429285431	0.9188389	A	1.3331239	A	0.750391296604993	0	lncRNA	14214-1_{1..255}	lnc-EXOC4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXOC4-2:1	chr7	133784941	133785195	+	lnc-EXOC4-2	lnc-EXOC4-2:1	XLOC_006259	linc-LRGUK-1	NA	NA	NA	inter
LNCA_21_P0009848	3.115649	P	3.9663422	P	0.554518231755235	0	lncRNA	TCONS_00027941	NA	NA	NA	NA	XLOC_013551	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013551), lincRNA [TCONS_00027941]"	chr20:46985713-46995244	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00027941	TCONS_00027941	chr20	 46985713	 46995244	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11625_PI429285431	1.4641305	A	1.4063097	A	1.04089229836613	0	lncRNA	13203-2_{3001..5913}	lnc-EPHA4-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPHA4-2:3	chr2	221674695	221677607	-	lnc-EPHA4-2	lnc-EPHA4-2:3	XLOC_002498	linc-OBSL1-4	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
CUST_36635_PI429285431	3.362978	P	3.5577326	P	0.873721501835486	0	lncRNA	37827-2_{3001..6000}	n345130|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_679|NULL|-1.3165200|-0.3125917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345130|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_679|NULL|-1.3165200|-0.3125917	chr11	122014860	122017859	+	NA	NA	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
CUST_28742_PI429285431	6.368174	P	6.4653487	P	0.934861985829908	0	lncRNA	30444-1_{1..1799}	n326138|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096514|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096514|-0.3118010|-0.3204254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326138|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096514|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096514|-0.3118010|-0.3204254	chr1	242147326	242149124	+	NA	NA	NA	NA	PLD5	"hg19_refFlat_PLD5:range=chr1:242253156-2426126585'pad=0,hg19_refFlat_PLD5:range=chr1:242253156-2426126585'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PLD5:range=chr1:242253156-2423834005'pad=0,hg19_refFlat_PLD5:range=chr1:242253156-2423834005'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PLD5:range=chr1:242253156-2426875785'pad=0,hg19_refFlat_PLD5:range=chr1:242253156-2426875785'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20chr1:242251689-242287242"	NA	inner
LNCA_21_P0014409	3.2212026	P	3.411378	P	0.876499151810473	0	lncRNA	XR_109636	XR_109636	XR_109636	NA	Hs.570397	LOC100506553	uncharacterized LOC100506553	ENST00000456721	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506553 (LOC100506553), miscRNA [XR_109636]"	chr20:60931446-60931505	hs|20q13.33	Agilent_HUMAN_G3V2	XR_109636	XR_109636	chr20	 60931446	 60931505	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7813_PI429285431	0.894343	A	0.91284794	A	0.987255263861174	0	lncRNA	9437-1_{1..560}	lnc-SOX2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SOX2-1:5	chr3	181281508	181282067	+	lnc-SOX2-1	lnc-SOX2-1:5	ENSG00000242808	RP11-4B14.2	NA	NA	NA	inter
CUST_7235_PI429285431	0.89204645	A	1.7583579	A	0.548547535186261	0	lncRNA	7822-1_{1..305}	"transcript_id ""ENST00000485298.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000485298.2"" | genecode_v17"	chr6	110761202	110761506	-	ENSG00000241162.2	ENST00000485298.2	RN7SL617P	RN7SL617P-201	SLC22A16	"hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60chr6:110751202-110771506"	NA	inner
CUST_19875_PI429285431	1.2695549	A	1.3171743	A	0.96753154220248	0	lncRNA	21531-1_{1..294}	lnc-RNASE6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNASE6-1:1	chr14	 21252304	 21252597	+	lnc-RNASE6-1	lnc-RNASE6-1:1	ENSG00000258810.1	RP11-219E7.1	RNASE6	NA	chr14:21249210-21250626	inter
CUST_24447_PI429285431	5.2258816	P	6.470724	P	0.421953989799446	0	lncRNA	26000-1_{1..785}	lnc-MFSD2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MFSD2A-1:1	chr1	 40364308	 40365092	+	lnc-MFSD2A-1	lnc-MFSD2A-1:1	ENSG00000236546.1	RP1-118J21.5	MYCL1	"hg19_refFlat_MYCL1:range=chr1:40363044-403671065'pad=0,hg19_refFlat_MYCL1:range=chr1:40363044-403671065'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30;hg19_refFlat_MYCL1:range=chr1:40363044-403675605'pad=0,hg19_refFlat_MYCL1:range=chr1:40363044-403675605'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30chr1:40361096-40367687"	NA	inner
CUST_46411_PI429285431	12.992243	P	13.567438	P	0.671195523988159	0	lncRNA	50625-1_{1..1152}	"gi|399498572|ref|NR_073083.1| Homo sapiens cysteine-rich protein 2 (CRIP2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|399498572|ref|NR_073083.1| Homo sapiens cysteine-rich protein 2 (CRIP2), transcript variant 6, non-coding RNA"	NW_004166863.1	   137942	   139093	+	1397	NR_073083.1	NA	NA	NA	NA	NA	Unknown
CUST_48968_PI429285431	5.2454157	P	4.8318996	P	1.3319280029675	0	lncRNA	52807-1_{1..269}	hg19_lincRNAsTranscripts_TCONS_l2_00019676 range=chr3:193733409-193788780 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019676 range=chr3:193733409-193788780 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	193733409	193733677	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006742	4.7288303	P	4.961544	P	0.851032598499398	0	lncRNA	ENST00000411802	NA	NA	NA	NA	XLOC_008765	NA	ENST00000411802	NA	NA	"BROAD Institute lincRNA (XLOC_008765), lincRNA [TCONS_00017944]"	chr10:30569075-30569016	hs|10p11.23	Agilent_HUMAN_G3V2	ENST00000411802	ENST00000411802	chr10	 30569016	 30569075	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29628_PI429285431	4.5651007	P	5.0790424	P	0.700306459592426	0	lncRNA	31389-1_{1..544}	n333189|AF436089|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079647_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079647_06|-1.2038500|-0.2755383	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333189|AF436089|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079647_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079647_06|-1.2038500|-0.2755383	chr6	  1096445	  1096988	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9945_PI429285431	1.9476628	A	1.9590931	A	0.992108423072226	0	lncRNA	11468-1_{1..724}	lnc-TMEM99-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM99-3:1	chr17	 38853708	 38854431	+	lnc-TMEM99-3	lnc-TMEM99-3:1	XLOC_012199	linc-TMEM99-2	KRT24	NA	chr17:38854243-38860002	inter
CUST_37747_PI429285431	2.2328753	A	1.5124282	A	1.64769258541008	0	lncRNA	38840-1_{1..978}	n346249|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1799|NULL|-1.3070300|-0.3741246	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346249|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1799|NULL|-1.3070300|-0.3741246	chr5	 25413376	 25414353	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.54;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00"	NA	inter
CUST_2876_PI429285431	0.9036403	A	1.4750417	A	0.672962770642453	0	lncRNA	2857-1_{1..612}	"transcript_id ""ENST00000412900.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412900.2"" | genecode_v17"	chr7	 81157719	 81158330	-	ENSG00000234113.2	ENST00000412900.2	AC008163.4	AC008163.4-001	NA	NA	NA	inter
LNCA_21_P0006589	6.340607	P	6.726073	P	0.765531686830939	0	lncRNA	ENST00000425031	NA	NA	NA	NA	XLOC_008276	NA	ENST00000425031	THC2649420	NA	"BROAD Institute lincRNA (XLOC_008276), lincRNA [TCONS_00017607]"	chrY:2970203-2970262	hs|Yp11.31	Agilent_HUMAN_G3V2	ENST00000425031	ENST00000425031	chrY	  2970203	  2970262	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37481_PI429285431	3.4541469	P	3.2481	A	1.15352310387487	0	lncRNA	38581-1_{1..315}	n345940|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1489|NULL|-1.5960200|-0.2885535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345940|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1489|NULL|-1.5960200|-0.2885535	chr4	110351837	110352151	-	NA	NA	NA	NA	SEC24B	NA	chr4:110354971-110363262	inter
LNCA_21_P0008072	11.82913	P	11.452395	P	1.29840008549965	0	lncRNA	TCONS_00021811	NA	NA	NA	NA	XLOC_010411	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010411), lincRNA [TCONS_00021811]"	chr13:64208452-64209640	hs|13q21.31	Agilent_HUMAN_G3V2	TCONS_00021811	TCONS_00021811	chr13	 64208452	 64209640	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47820_PI429285431	8.46182	P	8.578914	P	0.922043039471305	0	lncRNA	51734-1_{1..2611}	"gi|397140053|ref|XR_159143.1| PREDICTED: Homo sapiens HLA complex group 8 (HCG8), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397140053|ref|XR_159143.1| PREDICTED: Homo sapiens HLA complex group 8 (HCG8), misc_RNA"	NA	NA	NA	NA	NA	XR_159143.1	NA	NA	NA	NA	NA	Unknown
CUST_28722_PI429285431	7.478669	P	7.327963	P	1.11011258598218	0	lncRNA	30422-1_{1..465}	n326112|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046476|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046476|-0.2085280|-0.1975674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326112|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046476|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046476|-0.2085280|-0.1975674	chr10	  3237907	  3238371	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40"	NA	inter
CUST_28207_PI429285431	3.8665676	P	4.131985	P	0.831957998105469	0	lncRNA	29836-1_{1..786}	n325490|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322440|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322440|-1.1150400|-0.2497148	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325490|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322440|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322440|-1.1150400|-0.2497148	chr2	  1529443	  1530228	-	NA	NA	NA	NA	TPO	NA	chr2:1519443-1546499	inner
CUST_35246_PI429285431	0.893836	A	0.9151044	A	0.985366001702064	0	lncRNA	36647-1_{1..2816}	n342246|BC034811|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4736|NULL|1.3104900|-0.3992104	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342246|BC034811|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4736|NULL|1.3104900|-0.3992104	chrX	111125124	111127939	+	NA	NA	NA	NA	TRPC5	NA	chrX:111115124-111157218	inner
CUST_5065_PI429285431	7.238365	P	7.593335	P	0.781885901819799	0	lncRNA	5005-1_{1..486}	"transcript_id ""ENST00000554954.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554954.1"" | genecode_v17"	chr14	105119936	105120421	-	ENSG00000258736.1	ENST00000554954.1	RP11-982M15.7	RP11-982M15.7-001	NA	NA	NA	inter
CUST_8945_PI429285431	2.2327213	A	2.884694	A	0.636409510249026	0	lncRNA	10479-1_{1..2334}	lnc-RABGEF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RABGEF1-1:1	chr7	 66175818	 66178151	+	lnc-RABGEF1-1	lnc-RABGEF1-1:1	ENSG00000251536	ENST00000511755	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.21;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60"	NA	inter
CUST_31721_PI429285431	0.88798994	A	0.88787353	A	1.00008069251876	0	lncRNA	33462-1_{1..633}	n338250|AF085947|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|643|NULL|-1.0749500|-0.2931483	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338250|AF085947|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|643|NULL|-1.0749500|-0.2931483	chr14	 33433406	 33434038	-	NA	NA	NA	NA	NPAS3	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90chr14:33423406-33444030"	NA	inner
CUST_51748_PI429285431	0.9779943	A	0.8946238	A	1.05949038856755	0	lncRNA	55301-1_{1..541}	hg19_lincRNAsTranscripts_TCONS_l2_00012519 range=chr19:37742797-37755652 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012519 range=chr19:37742797-37755652 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 37742797	 37743337	+	NA	NA	NA	NA	ZNF383	NA	chr19:37732797-37734574	inter
CUST_31999_PI429285431	0.916657	A	0.92067116	A	0.997221463611195	0	lncRNA	33721-1_{1..356}	n338559|AF085943|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|964|NULL|-1.2794300|-0.4572668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338559|AF085943|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|964|NULL|-1.2794300|-0.4572668	chr1	232053589	232053944	-	NA	NA	NA	NA	DISC1	NA	chr1:232043589-232063945	inter
CUST_39543_PI429285431	1.0312822	A	1.5954274	A	0.676356040265679	0	lncRNA	40488-1_{1..1999}	n387454|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ekl.1||-0.7981250|-0.3523849	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387454|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ekl.1||-0.7981250|-0.3523849	chr6	  1333418	  1335416	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35812_PI429285431	7.110085	P	6.757364	P	1.27696678518166	0	lncRNA	37218-1_{1..1398}	n344488|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_36|NULL|-1.6700800|-0.3204786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,UCSC,"	>n344488|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_36|NULL|-1.6700800|-0.3204786	chr16	 14395220	 14396617	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30761_PI429285431	1.6365974	A	0.92442775	A	1.63826603205912	0	lncRNA	32546-1_{1..330}	n336586|Z25428|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326709|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326709|0.6784860|-0.2251490	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336586|Z25428|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326709|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326709|0.6784860|-0.2251490	chr3	185161262	185161591	+	NA	NA	NA	NA	MAP3K13	NA	chr3:185151262-185175745	inner
LNCA_21_P0009159	0.90489507	A	0.8998826	A	1.00348042210055	0	lncRNA	ENST00000436469	NA	NA	NA	NA	XLOC_012116	NA	ENST00000436469	NA	NA	"BROAD Institute lincRNA (XLOC_012116), lincRNA [TCONS_00025313]"	chr17:14277485-14277544	hs|17p12	Agilent_HUMAN_G3V2	ENST00000436469	ENST00000436469	chr17	 14277485	 14277544	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004340	0.9047666	A	2.644229	A	0.299481252838153	0	lncRNA	TCONS_00010179	NA	NA	NA	NA	XLOC_004641	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004641), lincRNA [TCONS_00010179]"	chr5:172951054-172951113	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_00010179	TCONS_00010179	chr5	172951054	172951113	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8125_PI429285431	1.2578074	A	2.2271636	A	0.510733926080173	0	lncRNA	9729-2_{3001..4579}	lnc-ERC1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ERC1-1:2	chr12	  1618339	  1619917	+	lnc-ERC1-1	lnc-ERC1-1:2	ENSG00000249628	ENST00000515614	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50"	NA	inter
CUST_13227_PI429285431	7.501936	P	8.070418	P	0.674325939297692	0	lncRNA	14855-1_{1..3000}	lnc-IFT20-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-IFT20-1:1	chr17	 26593522	 26596521	-	lnc-IFT20-1	lnc-IFT20-1:1	XLOC_012429	linc-C17orf108-4	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20"	NA	inter
LNCA_21_P0010779	2.5380814	A	3.4188218	P	0.543088643287351	0	lncRNA	ENST00000441085	NA	NA	NA	NA	XLOC_l2_001138	NA	ENST00000441085	THC2654596	NA	"BROAD Institute lincRNA (XLOC_l2_001138), lincRNA [TCONS_l2_00002668]"	chr1:156424443-156416315	hs|1q22	Agilent_HUMAN_G3V2	ENST00000441085	ENST00000441085	chr1	156416315	156424443	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38474_PI429285431	0.905013	A	0.89847714	A	1.00454059031322	0	lncRNA	39492-2_{3001..5316}	n382958|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dth.2||3.3886900|-0.3512489	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382958|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dth.2||3.3886900|-0.3512489	chr16	 29538925	 29541240	-	NA	NA	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30"	NA	inter
CUST_20919_PI429285431	0.8899398	A	1.0371138	A	0.903017592790695	0	lncRNA	22550-1_{1..2653}	lnc-PTPRZ1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-PTPRZ1-2:1	chr7	121949638	121952290	+	lnc-PTPRZ1-2	lnc-PTPRZ1-2:1	ENSG00000230316.2	RP11-560I19.4	FEZF1	"hg19_refFlat_FEZF1:range=chr7:121942051-1219444915'pad=0,hg19_refFlat_FEZF1:range=chr7:121942051-1219444915'pad=0 3'pad=0 strand=- repeatMasking=none,-110.80chr7:121939638-121944565"	NA	inter
CUST_4146_PI429285431	0.9049451	A	0.9203106	A	0.989405963315438	0	lncRNA	4105-1_{1..648}	"transcript_id ""ENST00000537714.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537714.1"" | genecode_v17"	chr12	  5480729	  5481376	+	ENSG00000256417.1	ENST00000537714.1	RP11-1038A11.3	RP11-1038A11.3-001	NA	NA	NA	inter
LNCA_21_P0004006	0.9002243	A	0.91994107	A	0.986426340779533	0	lncRNA	ENST00000511474	NA	NA	NA	NA	XLOC_004406	NA	ENST00000511474	NA	NA	"BROAD Institute lincRNA (XLOC_004406), lincRNA [TCONS_00009409]"	chr5:61181897-61181956	hs|5q12.1	Agilent_HUMAN_G3V2	ENST00000511474	ENST00000511474	chr5	 61181897	 61181956	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12958_PI429285431	7.863202	P	8.534646	P	0.627877926788392	0	lncRNA	14585-1_{1..327}	lnc-MPP7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MPP7-1:1	chr10	 28618858	 28619184	-	lnc-MPP7-1	lnc-MPP7-1:1	XLOC_008760	linc-MPP7-2	NA	NA	NA	inter
CUST_21187_PI429285431	6.9735365	P	7.378868	P	0.755062775813222	0	lncRNA	22812-1_{1..366}	lnc-HERC1-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HERC1-1:11	chr15	 63848490	 63848855	-	lnc-HERC1-1	lnc-HERC1-1:11	ENSG00000259248.1	RP11-265M18.2	USP3	NA	chr15:63838490-63858669	inter
CUST_21033_PI429285431	4.727616	P	5.308131	P	0.668725019476952	0	lncRNA	22661-1_{1..365}	lnc-VAMP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-VAMP3-1:1	chr1	  7430142	  7430506	+	lnc-VAMP3-1	lnc-VAMP3-1:1	ENSG00000237402.1	CAMTA1-IT1	CAMTA1	NA	chr1:7420142-7440331	inner
CUST_41286_PI429285431	0.89276665	A	0.90633595	A	0.990638571535915	0	lncRNA	42274-1_{1..110}	ENST00000362219 ncrna:miRNA chromosome:GRCh37:10:135061015:135061124:-1 gene:ENSG00000199089 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362219 ncrna:miRNA chromosome:GRCh37:10:135061015:135061124:-1 gene:ENSG00000199089 gene_biotype:miRNA transcript_biotype:miRNA	chr10	135061015	135061124	-	ENSG00000199089	ENST00000362219	NA	NA	VENTX	NA	chr10:135051408-135055433	inter
CUST_42449_PI429285431	2.178546	A	2.4367888	A	0.836105674718767	0	lncRNA	45177-1_{1..68}	ENST00000384262 ncrna:snoRNA chromosome:GRCh37:5:137896732:137896799:-1 gene:ENSG00000206989 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384262 ncrna:snoRNA chromosome:GRCh37:5:137896732:137896799:-1 gene:ENSG00000206989 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	137896732	137896799	-	ENSG00000206989	ENST00000384262	NA	NA	HSPA9	NA	chr5:137890571-137906799	inner
CUST_44715_PI429285431	0.898201	A	0.9124119	A	0.990198109498691	0	lncRNA	49270-1_{1..1180}	"gi|214830387|ref|NR_002812.3| Homo sapiens HLA complex group 26 (non-protein coding) (HCG26), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|214830387|ref|NR_002812.3| Homo sapiens HLA complex group 26 (non-protein coding) (HCG26), non-coding RNA"	Chr6	 31439006	 31440185	+	352961	NR_002812.3	NA	NA	NA	NA	NA	inter
LNCA_21_P0014257	3.1389494	P	2.934743	A	1.15205244960962	0	lncRNA	ENST00000368619	XR_109031	XR_109031	NA	NA	STK32C	serine/threonine kinase 32C	ENST00000368619	THC2562125	GO:0000166|GO:0004674|GO:0005524|GO:0046872	"PREDICTED: Homo sapiens hypothetical LOC100506057, transcript variant 2 (LOC100506057), miscRNA [XR_109031]"	chr10:134137728-134137669	hs|10q26.3	Agilent_HUMAN_G3V2	ENST00000368619	ENST00000368619	chr10	134137669	134137728	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13361_PI429285431	4.20356	P	4.1803184	P	1.01624031277701	0	lncRNA	14998-1_{1..288}	lnc-LRRC38-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC38-4:1	chr1	 14630880	 14631167	-	lnc-LRRC38-4	lnc-LRRC38-4:1	XLOC_000709	linc-LRRC38-7	NA	NA	NA	inter
CUST_9796_PI429285431	6.810089	P	6.9456153	P	0.910337678765088	0	lncRNA	11313-1_{1..314}	lnc-DHX15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX15-1:1	chr4	 24473998	 24474311	-	lnc-DHX15-1	lnc-DHX15-1:1	XLOC_003908	linc-PPARGC1A	LOC729175	NA	chr4:24473456-24484219	inter
CUST_23687_PI429285431	0.9037708	A	0.9046829	A	0.999367980265277	0	lncRNA	25252-1_{1..656}	lnc-ADCK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ADCK1-1:1	chr14	 79667377	 79668032	+	lnc-ADCK1-1	lnc-ADCK1-1:1	ENSG00000258419.1	RP11-588P7.1	NRXN3	NA	chr14:79657377-79677975	inner
CUST_10967_PI429285431	2.6037009	A	3.3061805	P	0.614515114326586	0	lncRNA	12509-1_{1..526}	lnc-VAX1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VAX1-1:2	chr10	118928371	118928896	-	lnc-VAX1-1	lnc-VAX1-1:2	XLOC_008959	linc-VAX1-2	NA	NA	NA	inter
CUST_7838_PI429285431	0.8982822	A	0.9101846	A	0.991783823799738	0	lncRNA	9462-1_{1..1610}	lnc-C5orf17-8:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf17-8:6	chr5	 27485033	 27486642	+	lnc-C5orf17-8	lnc-C5orf17-8:6	ENSG00000250337	RP11-46C20.1	NA	NA	NA	inter
LNCA_21_P0013241	0.9128349	A	0.9226342	A	0.993230658751217	0	lncRNA	TCONS_l2_00026017	NA	NA	NA	NA	XLOC_l2_013481	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013481), lincRNA [TCONS_l2_00026017]"	chr7:75807818-75807877	hs|7q11.23	Agilent_HUMAN_G3V2	TCONS_l2_00026017	TCONS_l2_00026017	chr7	 75807818	 75807877	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46738_PI429285431	11.768925	P	11.867882	P	0.933707773967757	0	lncRNA	50890-1_{1..2050}	"gi|320118923|ref|NR_037719.1| Homo sapiens C17orf61-PLSCR3 readthrough (C17orf61-PLSCR3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|320118923|ref|NR_037719.1| Homo sapiens C17orf61-PLSCR3 readthrough (C17orf61-PLSCR3), non-coding RNA"	Chr17	  7293046	  7295095	-	100529211	NR_037719.1	NA	NA	NA	NA	NA	inter
CUST_14947_PI429285431	0.9122534	A	0.9054501	A	1.00472682456948	0	lncRNA	16611-1_{1..1075}	lnc-RHPN1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RHPN1-3:1	chr8	144501145	144502219	+	lnc-RHPN1-3	lnc-RHPN1-3:1	XLOC_006952	linc-GSDMD-2	MAFA	NA	chr8:144510230-144511963	inter
CUST_45075_PI429285431	2.648948	A	4.289988	P	0.320625260947499	0	lncRNA	49558-1_{1..1191}	"gi|310120093|ref|XR_108813.1| PREDICTED: Homo sapiens uncharacterized LOC100506860, transcript variant 1 (LOC100506860), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120093|ref|XR_108813.1| PREDICTED: Homo sapiens uncharacterized LOC100506860, transcript variant 1 (LOC100506860), misc_RNA"	Chr7	130600730	130601920	+	100506860	XR_108813.2	NA	NA	NA	NA	NA	inter
CUST_27478_PI429285431	0.91211885	A	0.9075122	A	1.00319818979024	0	lncRNA	29048-1_{1..805}	n324654|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000318140|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000318140|-1.1944900|-0.2305598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324654|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000318140|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000318140|-1.1944900|-0.2305598	chr22	 44650542	 44651346	-	NA	NA	NA	NA	KIAA1644	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70chr22:44640542-44672292"	NA	inner
CUST_12039_PI429285431	0.8947754	A	1.3093275	A	0.750252382311212	0	lncRNA	13623-1_{1..1268}	lnc-NQO2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NQO2-2:2	chr6	  3027179	  3028446	+	lnc-NQO2-2	lnc-NQO2-2:2	XLOC_005131	linc-FAM136B	NQO2	NA	chr6:3017179-3019994	inter
LNCA_21_P0001224	1.0192875	A	0.9144842	A	1.07534776534278	0	lncRNA	ENST00000446169	NA	NA	NA	NA	XLOC_001211	NA	ENST00000446169	NA	NA	"BROAD Institute lincRNA (XLOC_001211), lincRNA [TCONS_00000736]"	chr1:220658558-220658499	hs|1q41	Agilent_HUMAN_G3V2	ENST00000446169	ENST00000446169	chr1	220658499	220658558	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30603_PI429285431	7.9750333	P	8.319366	P	0.787672219959739	0	lncRNA	32385-1_{1..414}	n335918|X65895|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322780|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322780|3.1700200|-0.2404300	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335918|X65895|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322780|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322780|3.1700200|-0.2404300	chr14	106330426	106330839	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8126_PI429285431	0.8955934	A	1.103291	A	0.865918049595937	0	lncRNA	9730-1_{1..1772}	lnc-FAN1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAN1-2:1	chr15	 31696177	 31697948	+	lnc-FAN1-2	lnc-FAN1-2:1	ENSG00000246638	XLOC_011202	NA	NA	NA	inter
CUST_35367_PI429285431	2.0991893	A	2.933681	P	0.560780582190951	0	lncRNA	36775-1_{1..229}	n342411|X71136|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4903|NULL|2.0128500|0.0195853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342411|X71136|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4903|NULL|2.0128500|0.0195853	chr13	 95364041	 95364269	-	NA	NA	NA	NA	SOX21	NA	chr13:95361876-95364389	inner
CUST_27041_PI429285431	4.286797	P	4.45058	P	0.892681232182441	0	lncRNA	28572-1_{1..793}	n324147|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051745|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051745|-1.0258200|-0.1684783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324147|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051745|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051745|-1.0258200|-0.1684783	chr9	 14337318	 14338110	+	NA	NA	NA	NA	NFIB	NA	chr9:14327318-14357907	inner
CUST_40956_PI429285431	5.473198	P	5.5706863	P	0.934658796071061	0	lncRNA	41632-1_{1..1046}	n410969|NR_038431|lncRNA|Homosapiens||RefGeneNoncode|NR_038431||-1.3298200|-0.2292743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410969|NR_038431|lncRNA|Homosapiens||RefGeneNoncode|NR_038431||-1.3298200|-0.2292743	chr2	  3605976	  3607021	+	NA	NA	NA	NA	RNASEH1	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-54.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60chr2:3595976-3605940"	NA	inter
CUST_42542_PI429285431	0.8923028	A	0.89181346	A	1.00033924217095	0	lncRNA	45348-1_{1..135}	ENST00000364506 ncrna:snoRNA chromosome:GRCh37:14:51710808:51710942:1 gene:ENSG00000201376 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364506 ncrna:snoRNA chromosome:GRCh37:14:51710808:51710942:1 gene:ENSG00000201376 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 51710808	 51710942	+	ENSG00000201376	ENST00000364506	NA	NA	TMX1	NA	chr14:51706886-51720942	inner
CUST_16828_PI429285431	3.5200377	P	3.685495	P	0.891645844105319	0	lncRNA	18534-1_{1..443}	lnc-BASP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BASP1-3:1	chr5	 17441578	 17442020	+	lnc-BASP1-3	lnc-BASP1-3:1	XLOC_004308	linc-PRDM9-8	NA	NA	NA	inter
LNCA_21_P0008134	4.7218246	P	4.986794	P	0.832216386086642	0	lncRNA	TCONS_00021951	NA	NA	NA	NA	XLOC_010548	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010548), lincRNA [TCONS_00021951]"	chr13:28527714-28527655	hs|13q12.2	Agilent_HUMAN_G3V2	TCONS_00021951	TCONS_00021951	chr13	 28527655	 28527714	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48768_PI429285431	9.79132	P	9.508201	P	1.2168227235263	0	lncRNA	52605-1_{1..523}	hg19_lincRNAsTranscripts_TCONS_l2_00014098 range=chr2:176881550-176885377 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014098 range=chr2:176881550-176885377 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	176881550	176882072	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26739_PI429285431	0.89476985	A	1.1916435	A	0.814014472641297	0	lncRNA	28232-3_{6001..8970}	n6223|AJ251760|GNAS1-asRNA|Homosapiens|GNAS1-AS|NONCODEv2.0|n6223|NULL|1.5226800|-0.2730873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n6223|AJ251760|GNAS1-asRNA|Homosapiens|GNAS1-AS|NONCODEv2.0|n6223|NULL|1.5226800|-0.2730873	chr20	 57422990	 57425959	-	NA	NA	NA	NA	GNAS	NA	chr20:57414795-57435958	inter
CUST_6_PI429285431	2.987338	A	3.2725787	P	0.820604687270827	0	lncRNA	5-1_{1..2165}	"transcript_id ""ENST00000506413.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,"	">transcript_id ""ENST00000506413.2"" | genecode_v17"	chr4	184018188	184020352	-	ENSG00000251359.3	ENST00000506413.2	WWC2-AS2	WWC2-AS2-201	WWC2	NA	chr4:184020463-184030352	inter
CUST_32021_PI429285431	6.380762	P	6.4209204	P	0.97254816109801	0	lncRNA	33742-1_{1..1519}	n338586|AK057765|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|992|NULL|-1.2307600|-0.3473853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338586|AK057765|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|992|NULL|-1.2307600|-0.3473853	chr13	 20666770	 20668288	+	NA	NA	NA	NA	ZMYM2	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-18.20chr13:20656770-20665968"	NA	inter
CUST_40840_PI429285431	5.920991	P	6.2020397	P	0.82299256365252	0	lncRNA	41543-1_{1..1313}	n410612|NR_037860_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037860_4||-1.0676400|-0.2077175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410612|NR_037860_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037860_4||-1.0676400|-0.2077175	chr6	  3475208	  3476520	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50"	NA	inter
CUST_20119_PI429285431	14.313321	P	14.736757	P	0.74564663580313	0	lncRNA	21767-1_{1..357}	lnc-C17orf62-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf62-1:1	chr17	 80416293	 80416649	-	lnc-C17orf62-1	lnc-C17orf62-1:1	ENSG00000265458.1	RP13-20L14.6	NARF	NA	chr17:80416060-80426397	inner
CUST_28371_PI429285431	3.5955443	P	3.2549467	P	1.26628101029105	0	lncRNA	30022-1_{1..208}	n325685|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045355|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045355|-1.1592200|-0.4808915	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325685|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045355|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045355|-1.1592200|-0.4808915	chr13	 77503071	 77503278	+	NA	NA	NA	NA	IRG1	NA	chr13:77511985-77519355	inter
LNCA_21_P0006310	8.884231	P	8.693454	P	1.14137826857319	0	lncRNA	TCONS_00016461	NA	NA	NA	NA	XLOC_007827	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007827), lincRNA [TCONS_00016461]"	chr9:112937256-112937197	hs|9q31.3	Agilent_HUMAN_G3V2	TCONS_00016461	TCONS_00016461	chr9	112937197	112937256	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32782_PI429285431	0.90708005	A	0.89819986	A	1.00617426131689	0	lncRNA	34417-1_{1..320}	n339423|Z48520|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1855|NULL|0.2785670|-0.1846082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339423|Z48520|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1855|NULL|0.2785670|-0.1846082	chrY	  2620336	  2620655	+	NA	NA	NA	NA	SRY	"hg19_refFlat_SRY:range=chrY:2655030-26556445'pad=0,hg19_refFlat_SRY:range=chrY:2655030-26556445'pad=0 3'pad=0 strand=- repeatMasking=none,-94.60chrY:2654896-2655792"	NA	inter
CUST_1620_PI429285431	1.422203	A	1.0816658	A	1.26622799716641	0	lncRNA	1606-1_{1..556}	"transcript_id ""ENST00000439479.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439479.1"" | genecode_v17"	chr3	194426277	194426832	+	ENSG00000233987.1	ENST00000439479.1	AC106706.1	AC106706.1-001	NA	NA	NA	inter
CUST_35655_PI429285431	6.8002205	P	7.124709	P	0.798581469064479	0	lncRNA	37076-1_{1..384}	n342811|M69012|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5314|NULL|2.0799800|-0.0384718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342811|M69012|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5314|NULL|2.0799800|-0.0384718	chr7	 65970580	 65970963	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8847_PI429285431	5.1166377	P	5.3696995	P	0.839113691646565	0	lncRNA	10386-1_{1..2823}	lnc-RNF135-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RNF135-2:2	chr17	 29658931	 29661753	+	lnc-RNF135-2	lnc-RNF135-2:2	ENSG00000249749	ENST00000508866	NF1	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50chr17:29648931-29668964"	NA	inner
CUST_45481_PI429285431	1.687273	A	1.9331727	A	0.84328973595964	0	lncRNA	49896-1_{1..944}	"gi|219279766|ref|NR_024629.1| Homo sapiens IDI2 antisense RNA 1 (IDI2-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|219279766|ref|NR_024629.1| Homo sapiens IDI2 antisense RNA 1 (IDI2-AS1), transcript variant 2, non-coding RNA"	Chr10	  1068577	  1069520	+	55853	NR_024629.1	NA	NA	NA	"hg19_refFlat_IDI2:range=chr10:1065457-10706635'pad=0,hg19_refFlat_IDI2:range=chr10:1065457-10706635'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_IDI1:range=chr10:1087127-10949435'pad=0,hg19_refFlat_IDI1:range=chr10:1087127-10949435'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70"	NA	inter
LNCA_21_P0005531	1.0770149	A	1.1085992	A	0.978345334517349	0	lncRNA	TCONS_00013975	NA	NA	NA	NA	XLOC_006613	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006613), lincRNA [TCONS_00013975]"	chr7:134102255-134102196	hs|7q33	Agilent_HUMAN_G3V2	TCONS_00013975	TCONS_00013975	chr7	134102196	134102255	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44437_PI429285431	2.4891608	A	2.9705515	P	0.716286819419752	0	lncRNA	49049-1_{1..3000}	"gi|372266195|ref|NR_045958.1| Homo sapiens endothelin receptor type A (EDNRA), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372266195|ref|NR_045958.1| Homo sapiens endothelin receptor type A (EDNRA), transcript variant 4, non-coding RNA"	Chr4	148402069	148405068	+	1909	NR_045958.1	NA	NA	NA	NA	NA	inter
CUST_25328_PI429285431	1.2549286	A	2.6605256	A	0.377461916980254	0	lncRNA	26860-1_{1..383}	lnc-FGFRL1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FGFRL1-4:2	chr4	  1126515	  1126897	+	lnc-FGFRL1-4	lnc-FGFRL1-4:2	ENSG00000251652.1	RP11-20I20.2	NA	NA	NA	inter
CUST_20522_PI429285431	2.92366	A	3.9408932	P	0.494062958009181	0	lncRNA	22164-1_{1..545}	lnc-TMEM178-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM178-2:1	chr2	 40332049	 40332593	+	lnc-TMEM178-2	lnc-TMEM178-2:1	ENSG00000227028.1	AC007254.3	SLC8A1	NA	chr2:40339286-40342461	inter
CUST_49398_PI429285431	1.4286602	A	0.92359126	A	1.41919117143435	0	lncRNA	53208-1_{1..731}	hg19_lincRNAsTranscripts_TCONS_l2_00022619 range=chr5:171621150-171630459 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022619 range=chr5:171621150-171630459 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	171621150	171621880	+	NA	NA	NA	NA	STK10	NA	chr5:171611150-171615346	inner
CUST_17933_PI429285431	5.3351345	P	4.6915274	P	1.56223024848299	0	lncRNA	19665-1_{1..361}	lnc-TBC1D1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBC1D1-1:2	chr4	 38289654	 38290014	+	lnc-TBC1D1-1	lnc-TBC1D1-1:2	XLOC_003508	linc-KLF3-5	NA	NA	NA	inter
CUST_27205_PI429285431	0.895992	A	0.90403813	A	0.994438371117829	0	lncRNA	28747-1_{1..804}	n324337|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042709|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042709|-1.1563400|-0.2369391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324337|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042709|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042709|-1.1563400|-0.2369391	chr6	151559508	151560311	-	NA	NA	NA	NA	AKAP12	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50chr6:151549508-151570466"	NA	inter
CUST_16744_PI429285431	3.3610454	A	4.251241	P	0.539540962551425	0	lncRNA	18451-1_{1..1670}	lnc-SERINC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERINC1-1:1	chr6	122450677	122452346	-	lnc-SERINC1-1	lnc-SERINC1-1:1	XLOC_005821	linc-C6orf170-1	NA	NA	NA	inter
CUST_37233_PI429285431	6.1738324	P	6.072774	P	1.07256003294983	0	lncRNA	38342-1_{1..965}	n345665|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1214|NULL|-1.3288800|-0.2497321	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345665|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1214|NULL|-1.3288800|-0.2497321	chr5	  9546458	  9547422	+	NA	NA	NA	NA	SEMA5A	NA	chr5:9536458-9546233	inter
CUST_10290_PI429285431	2.0526955	A	3.4610224	P	0.376748350378797	0	lncRNA	11816-1_{1..428}	lnc-PLCXD1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLCXD1-1:2	chrX	   282418	   282845	+	lnc-PLCXD1-1	lnc-PLCXD1-1:2	XLOC_007907	linc-SHOX-4	NA	"hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-26.30;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-29.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
CUST_30000_PI429285431	8.502038	P	8.154105	P	1.27273582695568	0	lncRNA	31766-1_{1..398}	n334384|S78852|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216826|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216826|1.6831500|-0.1024194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334384|S78852|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216826|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216826|1.6831500|-0.1024194	chr19	 10397680	 10398077	+	NA	NA	NA	NA	ICAM5	NA	chr19:10400655-10407454	inner
CUST_2411_PI429285431	0.9231898	A	0.9224852	A	1.00048851078597	0	lncRNA	2403-1_{1..360}	"transcript_id ""ENST00000519609.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519609.1"" | genecode_v17"	chr5	157912308	157912667	+	ENSG00000254135.1	ENST00000519609.1	RP11-32D16.1	RP11-32D16.1-001	NA	NA	NA	inter
CUST_25523_PI429285431	10.346967	P	10.582486	P	0.849379385553952	0	lncRNA	27054-1_{1..431}	lnc-FKBP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FKBP2-1:2	chr11	 64015425	 64015855	+	lnc-FKBP2-1	lnc-FKBP2-1:2	ENSG00000256940.1	RP11-783K16.5	PLCB3	NA	chr11:64018995-64025649	inter
LNCA_21_P0005799	0.8949751	A	0.89117175	A	1.0026397593745	0	lncRNA	TCONS_00014932	NA	NA	NA	NA	XLOC_007003	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007003), lincRNA [TCONS_00014932]"	chr8:9895435-9895376	hs|8p23.1	Agilent_HUMAN_G3V2	TCONS_00014932	TCONS_00014932	chr8	  9895376	  9895435	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21594_PI429285431	1.2996832	A	1.2897757	A	1.00689099004937	0	lncRNA	23207-1_{1..536}	lnc-TMEM18-14:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM18-14:1	chr2	  1155833	  1156368	-	lnc-TMEM18-14	lnc-TMEM18-14:1	ENSG00000236665.1	AC114808.2	SNTG2	NA	chr2:1145833-1166110	inner
CUST_9478_PI429285431	0.8984323	A	0.9087576	A	0.992868597412001	0	lncRNA	10985-1_{1..476}	lnc-CLLU1.1-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLLU1.1-10:1	chr12	 90987346	 90987821	+	lnc-CLLU1.1-10	lnc-CLLU1.1-10:1	XLOC_009830	linc-CLLU1-5	NA	NA	NA	inter
CUST_48927_PI429285431	0.88975984	A	0.8944062	A	0.996784569271751	0	lncRNA	52769-1_{1..481}	hg19_lincRNAsTranscripts_TCONS_l2_00018880 range=chr3:137497820-137499183 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018880 range=chr3:137497820-137499183 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	137497820	137498300	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12123_PI429285431	1.4333236	A	0.916395	A	1.43090570173325	0	lncRNA	13720-1_{1..837}	lnc-PIGF-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIGF-3:2	chr2	 46727337	 46728173	-	lnc-PIGF-3	lnc-PIGF-3:2	XLOC_002085	linc-SRBD1-5	NA	NA	NA	inter
LNCA_21_P0011204	0.8974208	A	0.89327407	A	1.00287842895218	0	lncRNA	AK096424	NA	AK096424	NA	Hs.660773	METTL21CP1	methyltransferase like 21C pseudogene 1	ENST00000416924	THC2624140	GO:0008168|GO:0016740	"BROAD Institute lincRNA (XLOC_l2_003839), lincRNA [TCONS_l2_00007457]"	chr13:103532498-103532557	hs|13q33.1	Agilent_HUMAN_G3V2	AK096424	AK096424	chr13	103532498	103532557	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40186_PI429285431	6.9943094	P	7.113467	P	0.920725111703957	0	lncRNA	41020-1_{1..1615}	n407967|NR_027682|lncRNA|Homosapiens||RefGeneNoncode|NR_027682||3.5732900|-0.1885315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407967|NR_027682|lncRNA|Homosapiens||RefGeneNoncode|NR_027682||3.5732900|-0.1885315	chr17	  5322960	  5324574	+	NA	NA	NA	NA	RPAIN	NA	chr17:5322961-5336340	inner
CUST_32267_PI429285431	10.1755	P	10.460656	P	0.820652866030296	0	lncRNA	33956-1_{1..1329}	n338845|BC043558|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1268|NULL|-1.0200400|-0.2512509	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338845|BC043558|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1268|NULL|-1.0200400|-0.2512509	chr12	  4809582	  4810910	-	NA	NA	NA	NA	GALNT8	NA	chr12:4829752-4839268	inter
CUST_7881_PI429285431	2.3265355	A	1.7283939	A	1.51376536120491	0	lncRNA	9500-2_{3001..3302}	lnc-C10orf10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C10orf10-2:1	chr10	 45458040	 45458341	-	lnc-C10orf10-2	lnc-C10orf10-2:1	ENSG00000224812	RP11-18M11.2	RASSF4	NA	chr10:45455219-45465137	inter
LNCA_21_P0013239	6.839317	P	7.561733	P	0.606081621165004	0	lncRNA	TCONS_l2_00026014	NA	NA	NA	NA	XLOC_l2_013480	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013480), lincRNA [TCONS_l2_00026014]"	chr7:75465240-75465299	hs|7q11.23	Agilent_HUMAN_G3V2	TCONS_l2_00026014	TCONS_l2_00026014	chr7	 75465240	 75465299	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29855_PI429285431	1.9797698	A	1.7531737	A	1.17007102002192	0	lncRNA	31618-1_{1..390}	n333761|L09096|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191957|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191957|2.1257300|-0.0868145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333761|L09096|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191957|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191957|2.1257300|-0.0868145	NA	NA	      389	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5082_PI429285431	7.698399	P	8.026064	P	0.796825101024481	0	lncRNA	5022-1_{1..1842}	"transcript_id ""ENST00000452053.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000452053.1"" | genecode_v17"	chr14	106435819	106437660	-	ENSG00000233988.1	ENST00000452053.1	ADAM6	ADAM6-001	NA	NA	NA	inter
CUST_34883_PI429285431	0.89842534	A	0.90474313	A	0.995630416206721	0	lncRNA	36308-1_{1..1469}	n341797|BC007959|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4275|NULL|-0.9664370|-0.1519043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341797|BC007959|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4275|NULL|-0.9664370|-0.1519043	chr9	136264532	136266000	-	NA	NA	NA	NA	C9orf96	"hg19_refFlat_C9orf96:range=chr9:136243345-1362705455'pad=0,hg19_refFlat_C9orf96:range=chr9:136243345-1362705455'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50chr9:136254532-136271220"	NA	inner
CUST_10209_PI429285431	1.8043445	A	0.9436101	A	1.81596248617108	0	lncRNA	11736-1_{1..327}	lnc-CCT8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCT8-1:1	chr21	 30559994	 30560320	-	lnc-CCT8-1	lnc-CCT8-1:1	XLOC_014047	linc-CCT8-1	NA	NA	NA	inter
CUST_30198_PI429285431	12.36948	P	12.207793	P	1.11859438998656	0	lncRNA	31972-1_{1..332}	n334971|AJ459862|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248119_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248119_04|-1.0773700|-0.1308043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334971|AJ459862|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248119_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248119_04|-1.0773700|-0.1308043	chr6	   444523	   444854	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37074_PI429285431	0.89511067	A	0.8936183	A	1.00103496726722	0	lncRNA	38202-1_{1..1402}	n345519|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1068|NULL|-1.3092100|-0.3092529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345519|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1068|NULL|-1.3092100|-0.3092529	chr2	 42562952	 42564353	+	NA	NA	NA	NA	EML4	NA	chr2:42552952-42559688	inter
CUST_45151_PI429285431	7.138616	P	7.037849	P	1.07234341583909	0	lncRNA	49630-1_{1..3000}	"gi|291463263|ref|NR_033403.1| Homo sapiens bone morphogenetic protein 1 (BMP1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|291463263|ref|NR_033403.1| Homo sapiens bone morphogenetic protein 1 (BMP1), transcript variant 4, non-coding RNA"	Chr8	 22022653	 22025652	+	649	NR_033403.1	NA	NA	NA	NA	NA	inter
CUST_16992_PI429285431	0.892496	A	1.8127223	A	0.52842612527649	0	lncRNA	18702-1_{1..848}	lnc-C5orf32-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf32-1:10	chr5	139552333	139553180	+	lnc-C5orf32-1	lnc-C5orf32-1:10	XLOC_004577	linc-C5orf32-1	C5orf32	NA	chr5:139554653-139562654	inter
CUST_30138_PI429285431	2.2285962	A	2.4002826	A	0.887804299165676	0	lncRNA	31912-1_{1..216}	n334786|AJ227905|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245054|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245054|-1.0197100|-0.4546447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334786|AJ227905|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245054|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245054|-1.0197100|-0.4546447	chr10	 44872332	 44872547	-	NA	NA	NA	NA	CXCL12	NA	chr10:44865605-44880545	inner
CUST_29788_PI429285431	0.901034	A	0.8909718	A	1.0069989646271	0	lncRNA	31551-1_{1..571}	n333493|BC030289|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000092120|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000092120|-0.1447910|-0.0864353	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333493|BC030289|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000092120|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000092120|-0.1447910|-0.0864353	chr2	 45169213	 45169783	-	NA	NA	NA	NA	SIX3	"hg19_refFlat_SIX3:range=chr2:45169244-451718995'pad=0,hg19_refFlat_SIX3:range=chr2:45169244-451718995'pad=0 3'pad=0 strand=+ repeatMasking=none,-112.40chr2:45169037-45173216"	NA	inner
CUST_39265_PI429285431	4.53604	P	3.6113966	P	1.89821499018086	0	lncRNA	40236-2_{3001..3901}	n386173|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010cpk.1||1.7716100|-0.3396480	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386173|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010cpk.1||1.7716100|-0.3396480	chr17	 16693205	 16694105	+	NA	NA	NA	NA	NA	"hg19_refFlat_SRP68:range=chr17:74035787-740685725'pad=0,hg19_refFlat_SRP68:range=chr17:74035787-740685725'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SRP68:range=chr17:74035787-740465685'pad=0,hg19_refFlat_SRP68:range=chr17:74035787-740465685'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
CUST_35255_PI429285431	1.7975602	A	2.1999733	A	0.756591723671878	0	lncRNA	36655-1_{1..1285}	n342258|BC040967|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4748|NULL|-0.8635050|-0.1409322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342258|BC040967|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4748|NULL|-0.8635050|-0.1409322	chr1	 40254647	 40255931	+	NA	NA	NA	NA	BMP8B	NA	chr1:40244647-40254533	inter
LNCA_21_P0009144	0.90456843	A	0.92576104	A	0.985417767909624	0	lncRNA	TCONS_00025088	NA	NA	NA	NA	XLOC_012048	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012048), lincRNA [TCONS_00025088]"	chr16:86755423-86755364	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00025088	TCONS_00025088	chr16	 86755364	 86755423	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47396_PI429285431	0.90565205	A	0.9205435	A	0.98973112209824	0	lncRNA	51442-1_{1..3000}	"gi|373251167|ref|NR_046020.1| Homo sapiens transmembrane protease, serine 3 (TMPRSS3), transcript variant G, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|373251167|ref|NR_046020.1| Homo sapiens transmembrane protease, serine 3 (TMPRSS3), transcript variant G, non-coding RNA"	Chr21	 43791996	 43794995	-	64699	NR_046020.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00"	NA	inter
CUST_46539_PI429285431	0.90730137	A	0.89767134	A	1.00669735579515	0	lncRNA	50725-3_{6001..7771}	"gi|298676494|ref|NR_033738.1| Homo sapiens chondroitin sulfate proteoglycan 4 pseudogene (LOC440300), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298676494|ref|NR_033738.1| Homo sapiens chondroitin sulfate proteoglycan 4 pseudogene (LOC440300), non-coding RNA"	Chr15	 84866600	 84868370	+	440300	NR_033738.1	NA	NA	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0,hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0,hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0,hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0,hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_GOLGA2:range=chr9:131019346-1310382555'pad=0,hg19_refFlat_GOLGA2:range=chr9:131019346-1310382555'pad=0 3'pad=0 strand=- repeatMasking=none,-101.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0,hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80"	NA	inter
CUST_25249_PI429285431	0.8882375	A	0.8870953	A	1.00079202619687	0	lncRNA	26779-1_{1..1791}	lnc-C5orf17-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C5orf17-2:1	chr5	 24611929	 24613719	+	lnc-C5orf17-2	lnc-C5orf17-2:1	ENSG00000251294.1	RP11-116O11.1	CDH10	NA	chr5:24601929-24623331	inner
CUST_31337_PI429285431	1.0422753	A	1.6532547	A	0.654752060569658	0	lncRNA	33119-1_{1..1033}	n337804|BC018033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|186|NULL|-1.0149500|-0.2499270	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337804|BC018033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|186|NULL|-1.0149500|-0.2499270	chrX	103031503	103032535	-	NA	NA	NA	NA	PLP1	NA	chrX:103031439-103047548	inner
LNCA_19_P00317945	1.9534802	A	3.0546556	P	0.466136567814392	0	lncRNA	THC2663825	NA	NA	NA	NA	XLOC_012862	NA	NA	THC2663825	NA	"BROAD Institute lincRNA (XLOC_012862), lincRNA [TCONS_00026541]"	chr18:059415332-059415273	hs|18q21.33	Agilent_HUMAN_G3V2	THC2663825	THC2663825	chr18	 59415273	 59415332	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11880_PI429285431	4.32694	P	4.9740896	P	0.638540662806634	0	lncRNA	13461-1_{1..764}	lnc-PIK3CG-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIK3CG-2:4	chr7	106421096	106421859	+	lnc-PIK3CG-2	lnc-PIK3CG-2:4	XLOC_006200	linc-PIK3CG-1	NA	NA	NA	inter
LNCA_21_P0005780	1.330915	A	0.91753143	A	1.33180565395704	0	lncRNA	TCONS_00014884	NA	NA	NA	NA	XLOC_006954	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006954), lincRNA [TCONS_00014884]"	chr8:144750565-144750624	hs|8q24.3	Agilent_HUMAN_G3V2	TCONS_00014884	TCONS_00014884	chr8	144750565	144750624	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007399	1.0745258	A	0.92187774	A	1.11160795188209	0	lncRNA	TCONS_00019756	NA	NA	NA	NA	XLOC_009550	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009550), lincRNA [TCONS_00019756]"	chr11:111065606-111065547	hs|11q23.1	Agilent_HUMAN_G3V2	TCONS_00019756	TCONS_00019756	chr11	111065547	111065606	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25248_PI429285431	4.295427	P	3.971849	P	1.25143035158478	0	lncRNA	26778-1_{1..523}	lnc-PANK3-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PANK3-9:1	chr5	166721256	166721778	-	lnc-PANK3-9	lnc-PANK3-9:1	ENSG00000254365.1	CTB-180C19.1	ODZ2	NA	chr5:166711843-166731278	inner
CUST_4082_PI429285431	0.9021009	A	1.2336991	A	0.794655686083234	0	lncRNA	4043-1_{1..294}	"transcript_id ""ENST00000544663.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544663.1"" | genecode_v17"	chr11	115403040	115403333	-	ENSG00000256281.1	ENST00000544663.1	RP11-136I14.2	RP11-136I14.2-001	NA	NA	NA	inter
LNCA_21_P0007878	1.6059773	A	0.9256018	A	1.60255680920627	0	lncRNA	TCONS_00021312	NA	NA	NA	NA	XLOC_010079	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010079), lincRNA [TCONS_00021312]"	chr12:52487065-52487006	hs|12q13.13	Agilent_HUMAN_G3V2	TCONS_00021312	TCONS_00021312	chr12	 52487006	 52487065	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50241_PI429285431	3.071055	P	3.9049757	P	0.561002575805921	0	lncRNA	53965-1_{1..461}	hg19_lincRNAsTranscripts_TCONS_l2_00029339 range=chr9:67333690-67340215 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029339 range=chr9:67333690-67340215 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 67333690	 67334150	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24949_PI429285431	2.309119	A	1.0796825	A	2.34475388582978	0	lncRNA	26488-2_{3001..3104}	lnc-LRRC1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC1-1:2	chr6	 53862762	 53862865	+	lnc-LRRC1-1	lnc-LRRC1-1:2	ENSG00000236740.2	RP11-411K7.1	NA	NA	NA	inter
LNCA_21_P0010404	0.9128667	A	0.92475367	A	0.99179443124331	0	lncRNA	TCONS_00029552	NA	NA	NA	NA	XLOC_014192	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014192), lincRNA [TCONS_00029552]"	chr22:27131087-27134063	hs|22q12.1	Agilent_HUMAN_G3V2	TCONS_00029552	TCONS_00029552	chr22	 27131087	 27134063	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21443_PI429285431	1.239263	A	1.2806621	A	0.971712141170034	0	lncRNA	23062-1_{1..555}	lnc-TMPRSS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMPRSS2-1:1	chr21	 42814592	 42815146	-	lnc-TMPRSS2-1	lnc-TMPRSS2-1:1	ENSG00000228318.1	AP001610.5	MX1	"hg19_refFlat_MX1:range=chr21:42803998-428306855'pad=0,hg19_refFlat_MX1:range=chr21:42803998-428306855'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.80chr21:42804592-42824669"	NA	inner
CUST_19328_PI429285431	0.9024036	A	0.91649216	A	0.990282081488458	0	lncRNA	20994-1_{1..591}	lnc-PEF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PEF1-1:1	chr1	 32041011	 32041601	-	lnc-PEF1-1	lnc-PEF1-1:1	ENSG00000229167.1	RP11-73M7.1	TINAGL1	NA	chr1:32042086-32051174	inter
CUST_37181_PI429285431	0.89362615	A	0.90230775	A	0.994000443088336	0	lncRNA	38296-1_{1..1193}	n345615|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1164|NULL|-1.3358400|-0.3567007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345615|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1164|NULL|-1.3358400|-0.3567007	chr4	105890401	105891593	-	NA	NA	NA	NA	NA	"hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0,hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90"	NA	inter
CUST_6930_PI429285431	4.747487	P	3.2645712	P	2.795130806743	0	lncRNA	6881-2_{3001..3674}	"transcript_id ""ENST00000577456.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000577456.1"" | genecode_v17"	chr22	 20635023	 20635696	-	ENSG00000223579.2	ENST00000577456.1	AC011718.2	AC011718.2-004	LOC729461	NA	chr22:20622023-20656782	inter
CUST_33067_PI429285431	1.40262	A	1.9074891	A	0.70472431639768	0	lncRNA	34675-2_{3001..3660}	n339754|AK125376|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2201|NULL|1.8387500|-0.1655108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339754|AK125376|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2201|NULL|1.8387500|-0.1655108	chr20	 62005104	 62005763	-	NA	NA	NA	NA	CHRNA4	NA	chr20:61992104-61992695	inter
CUST_10200_PI429285431	3.9018407	P	4.118451	P	0.860585059986651	0	lncRNA	11726-1_{1..300}	lnc-ZFP36L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP36L2-1:1	chr2	 43411628	 43411927	-	lnc-ZFP36L2-1	lnc-ZFP36L2-1:1	XLOC_002071	linc-HAAO-5	NA	NA	NA	inter
CUST_44637_PI429285431	0.9011334	A	0.913682	A	0.991339691686588	0	lncRNA	49202-1_{1..3000}	"gi|300193047|ref|NR_024019.2| Homo sapiens family with sequence similarity 193, member B (FAM193B), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300193047|ref|NR_024019.2| Homo sapiens family with sequence similarity 193, member B (FAM193B), transcript variant 2, non-coding RNA"	Chr5	176946790	176949789	-	54540	NR_024019.2	NA	NA	NA	NA	NA	inter
CUST_1131_PI429285431	2.183886	A	2.0729465	A	1.07993127152868	0	lncRNA	1120-1_{1..368}	"transcript_id ""ENST00000437118.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437118.1"" | genecode_v17"	chr2	151027937	151028304	+	ENSG00000230645.1	ENST00000437118.1	AC016682.1	AC016682.1-001	NA	NA	NA	inter
CUST_19587_PI429285431	1.7445737	A	1.9229004	A	0.883727387290042	0	lncRNA	21243-1_{1..873}	lnc-CHST4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-CHST4-2:1	chr16	 71611968	 71612840	+	lnc-CHST4-2	lnc-CHST4-2:1	ENSG00000260886.1	RP11-432I5.1	TAT	"hg19_refFlat_TAT:range=chr16:71602047-716103185'pad=0,hg19_refFlat_TAT:range=chr16:71602047-716103185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr16:71601968-71610998"	NA	inter
CUST_21287_PI429285431	2.2288458	A	2.509088	A	0.823452764209362	0	lncRNA	22912-1_{1..439}	lnc-GSTM5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GSTM5-1:1	chr1	110317694	110318132	+	lnc-GSTM5-1	lnc-GSTM5-1:1	ENSG00000241720.1	RP4-735C1.4	NA	NA	NA	inter
CUST_21822_PI429285431	8.864702	P	8.974102	P	0.926973499175829	0	lncRNA	23432-1_{1..420}	lnc-CCDC64B-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC64B-1:9	chr16	  3105737	  3106156	-	lnc-CCDC64B-1	lnc-CCDC64B-1:9	ENSG00000261971.1	RP11-473M20.7	IL32	NA	chr16:3115313-3116020	inner
CUST_38810_PI429285431	4.284918	P	5.1996536	P	0.530441074712274	0	lncRNA	39803-1_{1..1644}	n384568|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003izq.2||1.3336900|-0.3237029	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n384568|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003izq.2||1.3336900|-0.3237029	chr4	190784614	190786257	-	NA	NA	NA	NA	FRG1	NA	chr4:190861974-190870993	inter
LNCA_21_P0010792	1.6482034	A	2.024135	A	0.770607642977154	0	lncRNA	ENST00000438371	NA	NA	NA	NA	XLOC_l2_001382	NA	ENST00000438371	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001382), lincRNA [TCONS_l2_00002808]"	chr1:236105927-236105868	hs|1q42.3	Agilent_HUMAN_G3V2	ENST00000438371	ENST00000438371	chr1	236105868	236105927	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3395733	2.2540026	A	3.1448836	P	0.539284696649085	0	lncRNA	ENST00000421616	XR_132803	XR_132803	NA	NA	NA	NA	ENST00000421616	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652837, transcript variant 1 (LOC100652837), miscRNA [XR_132803]"	chr1:32671777-32671718	hs|1p35.1	Agilent_HUMAN_G3V2	ENST00000421616	ENST00000421616	chr1	 32671718	 32671777	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_132_PI429285431	8.5820055	P	8.757458	P	0.885489742482361	0	lncRNA	124-1_{1..326}	"transcript_id ""ENST00000442483.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442483.2"" | genecode_v17"	chr1	  2143962	  2144287	+	ENSG00000234396.3	ENST00000442483.2	RP11-181G12.4	RP11-181G12.4-001	SKI	NA	chr1:2160134-2162177	inter
CUST_10859_PI429285431	5.3529654	P	5.1579614	P	1.14472733445238	0	lncRNA	12396-1_{1..296}	lnc-PEAK1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PEAK1.1-1:1	chr15	 77712348	 77712643	-	lnc-PEAK1.1-1	lnc-PEAK1.1-1:1	XLOC_011535	linc-PEAK1	HMG20A	NA	chr15:77702348-77722556	inner
LNCA_21_P0001312	0.90373594	A	0.9074032	A	0.997461277092147	0	lncRNA	TCONS_00000966	NA	NA	NA	NA	XLOC_000225	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000225), lincRNA [TCONS_00000966]"	chr1:60724189-60724248	hs|1p32.1	Agilent_HUMAN_G3V2	TCONS_00000966	TCONS_00000966	chr1	 60724189	 60724248	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41090_PI429285431	3.2945724	P	3.427196	P	0.912171120468629	0	lncRNA	41789-1_{1..110}	ENST00000384970 ncrna:miRNA chromosome:GRCh37:15:89155056:89155165:1 gene:ENSG00000207703 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384970 ncrna:miRNA chromosome:GRCh37:15:89155056:89155165:1 gene:ENSG00000207703 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 89155056	 89155165	+	ENSG00000207703	ENST00000384970	NA	NA	AEN	NA	chr15:89164527-89165165	inter
CUST_26634_PI429285431	0.89854616	A	1.5365353	A	0.642608005998613	0	lncRNA	28137-1_{1..635}	lnc-MAPK6-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAPK6-9:2	chr15	 52879258	 52879892	+	lnc-MAPK6-9	lnc-MAPK6-9:2	ENSG00000260618.1	RP11-23N2.4	KIAA1370	"hg19_refFlat_FAM214A:range=chr15:52874351-529702185'pad=0,hg19_refFlat_FAM214A:range=chr15:52874351-529702185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr15:52873518-52889849"	NA	inner
CUST_20571_PI429285431	1.0342462	A	0.89959687	A	1.09782593728064	0	lncRNA	22212-1_{1..690}	lnc-LPIN2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LPIN2-1:2	chr18	  2832614	  2833303	-	lnc-LPIN2-1	lnc-LPIN2-1:2	ENSG00000266049.1	RP11-703M24.5	NA	"hg19_refFlat_SMCHD1:range=chr18:2656075-28025505'pad=0,hg19_refFlat_SMCHD1:range=chr18:2656075-28025505'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60"	NA	inter
CUST_9077_PI429285431	3.6186917	P	3.6401033	P	0.985268200431	0	lncRNA	10600-2_{3001..4457}	lnc-COG3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COG3-2:1	chr13	 45983485	 45984941	+	lnc-COG3-2	lnc-COG3-2:1	ENSG00000246060	ENST00000501822	SLC25A30	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_SLC25A30:range=chr13:45970109-459855605'pad=0,hg19_refFlat_SLC25A30:range=chr13:45970109-459855605'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-24.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.44chr13:45970485-45992516"	NA	inner
CUST_49965_PI429285431	1.2353414	A	1.0562955	A	1.13213492092599	0	lncRNA	53714-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026263 range=chr7:149244153-149250817 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026263 range=chr7:149244153-149250817 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	149244153	149247152	+	NA	NA	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70"	NA	inter
CUST_38958_PI429285431	5.839808	P	5.8933682	P	0.963555585443798	0	lncRNA	39943-1_{1..470}	n385135|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tgl.1||0.4327350|-0.0487903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385135|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tgl.1||0.4327350|-0.0487903	chr7	 38339411	 38339880	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14885_PI429285431	1.5300348	A	1.3188107	A	1.15767002886836	0	lncRNA	16549-2_{3001..3704}	lnc-EIF2AK4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-EIF2AK4-1:2	chr15	 40217988	 40218691	+	lnc-EIF2AK4-1	lnc-EIF2AK4-1:2	XLOC_011218	linc-EIF2AK4	GPR176	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50chr15:40204988-40213093"	NA	inter
LNCA_21_P0012680	0.8976345	A	0.8986666	A	0.999284858630513	0	lncRNA	TCONS_l2_00021299	NA	NA	NA	NA	XLOC_l2_011272	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011272), lincRNA [TCONS_l2_00021299]"	chr4:135258571-135258512	hs|4q28.3	Agilent_HUMAN_G3V2	TCONS_l2_00021299	TCONS_l2_00021299	chr4	135258512	135258571	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39839_PI429285431	4.8422275	P	5.348899	P	0.703844433985417	0	lncRNA	40742-1_{1..2805}	n406448|NR_023316|lncRNA|Homosapiens||RefGeneNoncode|NR_023316||4.3524700|-0.1066798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406448|NR_023316|lncRNA|Homosapiens||RefGeneNoncode|NR_023316||4.3524700|-0.1066798	chr16	 89160216	 89163020	+	NA	NA	NA	NA	ACSF3	NA	chr16:89160254-89222169	inter
CUST_5414_PI429285431	4.180595	P	4.273018	P	0.937946149190238	0	lncRNA	5348-1_{1..2093}	"transcript_id ""ENST00000573042.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000573042.1"" | genecode_v17"	chr16	  4295826	  4297918	-	ENSG00000262468.1	ENST00000573042.1	RP11-95P2.1	RP11-95P2.1-001	SRL	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70chr16:4285826-4292081"	NA	inter
CUST_21007_PI429285431	7.768997	P	7.147672	P	1.53828732658589	0	lncRNA	22636-1_{1..758}	lnc-FBXO28-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FBXO28-1:1	chr1	224197022	224197779	+	lnc-FBXO28-1	lnc-FBXO28-1:1	ENSG00000185495.6	RP11-504P24.4	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00"	NA	inter
CUST_27728_PI429285431	3.943575	P	3.940392	P	1.00220872311885	0	lncRNA	29310-1_{1..459}	n324943|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080493|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080493|-1.0293000|-0.2801150	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324943|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080493|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080493|-1.0293000|-0.2801150	chr20	 50908283	 50908741	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5262_PI429285431	2.1213586	A	2.2648523	A	0.905324121965291	0	lncRNA	5202-1_{1..432}	"transcript_id ""ENST00000558244.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558244.1"" | genecode_v17"	chr15	 80572473	 80572904	-	ENSG00000259361.1	ENST00000558244.1	RP11-210M15.3	RP11-210M15.3-002	NA	NA	NA	inter
CUST_14909_PI429285431	0.89817095	A	0.9044297	A	0.99567116163171	0	lncRNA	16572-1_{1..770}	lnc-ANKDD1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKDD1B-1:1	chr5	 74906143	 74906912	+	lnc-ANKDD1B-1	lnc-ANKDD1B-1:1	XLOC_004431	linc-SV2C-2	ANKDD1B	NA	chr5:74916140-74916582	inter
CUST_20696_PI429285431	1.1109781	A	0.8884099	A	1.16680882255921	0	lncRNA	22332-1_{1..533}	lnc-PRKD1-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRKD1-8:1	chr14	 29234366	 29234898	-	lnc-PRKD1-8	lnc-PRKD1-8:1	ENSG00000257126.1	RP11-966I7.1	FOXG1	NA	chr14:29236287-29238871	inter
CUST_17431_PI429285431	3.3263695	P	3.2081153	P	1.08542060398797	0	lncRNA	19155-1_{1..1481}	lnc-UMPS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UMPS-2:1	chr3	124781451	124782931	+	lnc-UMPS-2	lnc-UMPS-2:1	XLOC_002791	linc-ROPN1B-3	HEG1	NA	chr3:124771451-124774802	inter
CUST_43402_PI429285431	0.8954371	A	2.4326274	A	0.344555836295681	0	lncRNA	48215-1_{1..2544}	"gi|188497619|ref|NR_023345.1| Homo sapiens connector enhancer of kinase suppressor of Ras 1 (CNKSR1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|188497619|ref|NR_023345.1| Homo sapiens connector enhancer of kinase suppressor of Ras 1 (CNKSR1), transcript variant 2, non-coding RNA"	Chr1	 26503982	 26506525	+	10256	NR_023345.1	NA	NA	NA	NA	NA	inter
CUST_5931_PI429285431	0.8964803	A	0.89794517	A	0.998985144803823	0	lncRNA	5860-1_{1..2926}	"transcript_id ""ENST00000580942.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580942.1"" | genecode_v17"	chr17	 62073431	 62076356	-	ENSG00000264954.1	ENST00000580942.1	RP11-214C8.2	RP11-214C8.2-001	C17orf72	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C17orf72:range=chr17:62075725-620791215'pad=0,hg19_refFlat_C17orf72:range=chr17:62075725-620791215'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C17orf72:range=chr17:62075725-620793355'pad=0,hg19_refFlat_C17orf72:range=chr17:62075725-620793355'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C17orf72:range=chr17:62075725-620788805'pad=0,hg19_refFlat_C17orf72:range=chr17:62075725-620788805'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.11;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.60chr17:62075711-62081645"	NA	inner
CUST_13236_PI429285431	2.0574288	A	1.76649	A	1.22343614112678	0	lncRNA	14864-1_{1..435}	lnc-ARMCX4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARMCX4-1:1	chrX	100672508	100672942	+	lnc-ARMCX4-1	lnc-ARMCX4-1:1	XLOC_008025	linc-ARMCX1-4	RPL36A-HNRNPH2	NA	chrX:100662508-100669128	inter
CUST_42805_PI429285431	0.88466877	A	0.8865843	A	0.998673136843592	0	lncRNA	45802-1_{1..67}	ENST00000390859 ncrna:snoRNA chromosome:GRCh37:1:159821696:159821762:-1 gene:ENSG00000212161 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390859 ncrna:snoRNA chromosome:GRCh37:1:159821696:159821762:-1 gene:ENSG00000212161 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	159821696	159821762	-	ENSG00000212161	ENST00000390859	NA	NA	VSIG8	NA	chr1:159824106-159831762	inner
CUST_51218_PI429285431	6.553905	P	6.896889	P	0.788408917742488	0	lncRNA	54836-1_{1..388}	hg19_lincRNAsTranscripts_TCONS_l2_00008398 range=chr15:20495298-20496835 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008398 range=chr15:20495298-20496835 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 20495298	 20495685	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34837_PI429285431	5.754466	P	6.0107036	P	0.837268584907728	0	lncRNA	36266-2_{3001..3788}	n341742|AK128504|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4215|NULL|-1.0250000|-0.3844431	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341742|AK128504|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4215|NULL|-1.0250000|-0.3844431	chr9	104184298	104185085	+	NA	NA	NA	NA	ZNF189	"hg19_refFlat_ALDOB:range=chr9:104184091-1041931695'pad=0,hg19_refFlat_ALDOB:range=chr9:104184091-1041931695'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60chr9:104171298-104172942"	NA	inner
CUST_52228_PI429285431	0.88381803	A	0.8836246	A	1.00013408444765	0	lncRNA	55740-2_{3001..3191}	hg19_lincRNAsTranscripts_TCONS_l2_00031172 range=chr1_gl000192_random:222732-373960 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00031172 range=chr1_gl000192_random:222732-373960 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1_gl000192_random	   225732	   225922	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27496_PI429285431	1.2901244	A	1.8123344	A	0.696304378260032	0	lncRNA	29070-1_{1..274}	n324676|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000156190|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000156190|-0.8001400|-0.2623941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324676|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000156190|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000156190|-0.8001400|-0.2623941	chr22	 30867253	 30867526	+	NA	NA	NA	NA	SEC14L3	NA	chr22:30857253-30868034	inner
CUST_20733_PI429285431	2.9804738	A	3.1248324	P	0.904781540097378	0	lncRNA	22367-1_{1..2368}	lnc-SLC16A3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC16A3-2:1	chr17	 80174232	 80176599	+	lnc-SLC16A3-2	lnc-SLC16A3-2:1	ENSG00000264548.1	RP13-516M14.2	CCDC57	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40chr17:80164232-80170689"	NA	inter
CUST_39144_PI429285431	5.5387697	P	5.9477186	P	0.753171910058642	0	lncRNA	40119-1_{1..1889}	n385765|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dry.2||0.5544190|-0.1672634	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n385765|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dry.2||0.5544190|-0.1672634	chrX	 53123338	 53125226	+	NA	NA	NA	NA	TSPYL2	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ACTL6B:range=chr7:100240869-1002539775'pad=0,hg19_refFlat_ACTL6B:range=chr7:100240869-1002539775'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_POTEE:range=chr2:131975976-1320222565'pad=0,hg19_refFlat_POTEE:range=chr2:131975976-1320222565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10chrX:53113338-53117728"	NA	inter
CUST_8276_PI429285431	2.1932647	A	2.1098409	A	1.05952953189255	0	lncRNA	9860-1_{1..352}	lnc-FEZF2-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FEZF2-1:10	chr3	 62248295	 62248646	-	lnc-FEZF2-1	lnc-FEZF2-1:10	ENSG00000243077	RP11-204J18.2	PTPRG	NA	chr3:62238295-62258415	inner
LNCA_21_P0014618	7.295264	P	7.2239056	P	1.05070553200961	0	lncRNA	ENST00000468356	XR_110581	XR_110581	NA	Hs.59872	LOC100507653	NA	ENST00000468356	THC2653290	NA	"PREDICTED: Homo sapiens hypothetical LOC100507653 (LOC100507653), miscRNA [XR_110581]"	chr4:647379-647320	hs|4p16.3	Agilent_HUMAN_G3V2	ENST00000468356	ENST00000468356	chr4	   647320	   647379	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1011_PI429285431	0.88710046	A	1.0693958	A	0.881299724969496	0	lncRNA	1000-1_{1..580}	"transcript_id ""ENST00000439893.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439893.1"" | genecode_v17"	chr2	108159205	108159784	+	ENSG00000224568.1	ENST00000439893.1	AC096669.3	AC096669.3-002	NA	NA	NA	inter
CUST_19867_PI429285431	1.4577535	A	1.7234251	A	0.831811421672673	0	lncRNA	21523-2_{3001..3408}	lnc-SAP30-5:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:16	chr4	174463085	174463492	+	lnc-SAP30-5	lnc-SAP30-5:16	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174450085-174451378	inter
CUST_12295_PI429285431	0.90717465	A	1.0447637	A	0.90903701770733	0	lncRNA	13906-1_{1..272}	lnc-AC010872.2.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC010872.2.1-5:1	chr2	 22421926	 22422197	+	lnc-AC010872.2.1-5	lnc-AC010872.2.1-5:1	XLOC_001391	linc-KLHL29-4	NA	NA	NA	inter
CUST_28495_PI429285431	1.545225	A	1.6885849	A	0.905408088417905	0	lncRNA	30163-1_{1..338}	n325838|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000105392|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000105392|2.2131100|-0.1450315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325838|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000105392|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000105392|2.2131100|-0.1450315	chr11	  1754735	  1755072	-	NA	NA	NA	NA	IFITM10	NA	chr11:1753640-1766194	inner
CUST_1768_PI429285431	0.8985926	A	0.88459617	A	1.00974879893441	0	lncRNA	1754-1_{1..465}	"transcript_id ""ENST00000514413.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514413.1"" | genecode_v17"	chr4	 55711734	 55712198	+	ENSG00000251256.1	ENST00000514413.1	RP11-273B19.1	RP11-273B19.1-001	NA	NA	NA	inter
CUST_41742_PI429285431	5.803459	P	6.349654	P	0.684823920391828	0	lncRNA	43275-1_{1..78}	ENST00000362288 ncrna:miRNA chromosome:GRCh37:7:129414532:129414609:-1 gene:ENSG00000199158 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362288 ncrna:miRNA chromosome:GRCh37:7:129414532:129414609:-1 gene:ENSG00000199158 gene_biotype:miRNA transcript_biotype:miRNA	chr7	129414532	129414609	-	ENSG00000199158	ENST00000362288	NA	NA	NA	NA	NA	inter
CUST_15408_PI429285431	2.358468	A	1.640155	A	1.64525704556041	0	lncRNA	17094-1_{1..2794}	lnc-BIRC7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-BIRC7-2:1	chr20	 61734907	 61737700	+	lnc-BIRC7-2	lnc-BIRC7-2:1	XLOC_013607	linc-BIRC7-3	NA	NA	NA	inter
CUST_34919_PI429285431	1.1419337	A	1.8232502	A	0.623595965791584	0	lncRNA	36341-1_{1..1839}	n341837|AK130726|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4316|NULL|-1.0667700|-0.1637172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341837|AK130726|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4316|NULL|-1.0667700|-0.1637172	chr6	 38129772	 38131610	+	NA	NA	NA	NA	BTBD9	NA	chr6:38136227-38142113	inter
CUST_36190_PI429285431	3.336344	P	3.6584377	P	0.799908174296849	0	lncRNA	37453-1_{1..321}	n344742|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_291|NULL|-1.3139400|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344742|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_291|NULL|-1.3139400|-1.0000000	chr4	 53578482	 53578802	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2059_PI429285431	0.89530283	A	0.88816416	A	1.00496041128953	0	lncRNA	2051-1_{1..332}	"transcript_id ""ENST00000502893.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502893.1"" | genecode_v17"	chr5	  5047093	  5047424	-	ENSG00000251426.1	ENST00000502893.1	CTD-2247C11.4	CTD-2247C11.4-002	NA	NA	NA	inter
CUST_25863_PI429285431	5.3174767	P	5.724085	P	0.75439483307598	0	lncRNA	27384-1_{1..588}	lnc-CTU2-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTU2-6:3	chr16	 88738221	 88738808	+	lnc-CTU2-6	lnc-CTU2-6:3	ENSG00000260630.1	RP5-1142A6.3	SNAI3	NA	chr16:88744090-88748587	inter
CUST_41061_PI429285431	0.9007692	A	0.9039686	A	0.997784802090836	0	lncRNA	41721-2_{3001..3834}	n411753|NR_045089|lncRNA|Homosapiens||RefGeneNoncode|NR_045089||2.0965000|-0.3029527	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411753|NR_045089|lncRNA|Homosapiens||RefGeneNoncode|NR_045089||2.0965000|-0.3029527	chr5	110408777	110409610	+	NA	NA	NA	NA	TSLP	NA	chr5:110407390-110413722	inner
CUST_22190_PI429285431	1.879528	A	0.8851787	A	1.99218178750605	0	lncRNA	23790-1_{1..1833}	lnc-SOX9-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SOX9-3:1	chr17	 70351046	 70352878	+	lnc-SOX9-3	lnc-SOX9-3:1	ENSG00000264026.1	RP11-1124B17.1	NA	NA	NA	inter
LNCA_21_P0005112	0.9029181	A	1.4431852	A	0.687643587217194	0	lncRNA	TCONS_00012441	NA	NA	NA	NA	XLOC_005210	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005210), lincRNA [TCONS_00012441]"	chr6:26477240-26477299	hs|6p22.2	Agilent_HUMAN_G3V2	TCONS_00012441	TCONS_00012441	chr6	 26477240	 26477299	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14212_PI429285431	0.93281513	A	0.90547895	A	1.01912864856916	0	lncRNA	15865-1_{1..814}	lnc-C1orf168-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf168-2:2	chr1	 57109889	 57110702	-	lnc-C1orf168-2	lnc-C1orf168-2:2	XLOC_000846	linc-PPAP2B	PRKAA2	NA	chr1:57099889-57120681	inter
CUST_36712_PI429285431	0.90522707	A	0.9077416	A	0.998258578656831	0	lncRNA	37891-1_{1..2955}	n345198|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_747|NULL|-1.3168200|-0.3180176	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345198|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_747|NULL|-1.3168200|-0.3180176	chr13	 48399475	 48402429	-	NA	NA	NA	NA	SUCLA2	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.61;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40chr13:48516791-48519188"	NA	inter
CUST_11734_PI429285431	1.8425113	A	2.017544	A	0.885747442600535	0	lncRNA	13315-1_{1..478}	lnc-PGLYRP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PGLYRP2-1:1	chr19	 15718380	 15718857	-	lnc-PGLYRP2-1	lnc-PGLYRP2-1:1	XLOC_013243	linc-PGLYRP2-2	CYP4F8	NA	chr19:15726029-15728461	inter
CUST_47032_PI429285431	15.803029	P	15.905112	P	0.931686826686818	0	lncRNA	51122-1_{1..930}	"gi|308199474|ref|NR_034166.2| Homo sapiens NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa (NDUFA11), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|308199474|ref|NR_034166.2| Homo sapiens NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa (NDUFA11), transcript variant 3, non-coding RNA"	Chr19	  5894681	  5895610	-	126328	NR_034166.2	NA	NA	NA	NA	NA	inter
CUST_49157_PI429285431	1.2822572	A	1.3589303	A	0.948241802720787	0	lncRNA	52983-1_{1..1735}	hg19_lincRNAsTranscripts_TCONS_l2_00020759 range=chr4:129432449-129436017 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020759 range=chr4:129432449-129436017 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	129432449	129434183	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33078_PI429285431	2.5333688	A	2.345609	A	1.13899372586705	0	lncRNA	34684-1_{1..3000}	n339766|D87436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2213|NULL|15.9451000|-0.2685408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339766|D87436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2213|NULL|15.9451000|-0.2685408	chr18	  2916999	  2919998	-	NA	NA	NA	NA	EMILIN2	NA	chr18:2906999-2914090	inner
CUST_41574_PI429285431	5.0553455	P	5.442335	P	0.764723704614968	0	lncRNA	42894-1_{1..100}	ENST00000582686 ncrna:miRNA chromosome:GRCh37:HSCHR15_1_CTG8:66332571:66332670:1 gene:ENSG00000265269 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582686 ncrna:miRNA chromosome:GRCh37:HSCHR15_1_CTG8:66332571:66332670:1 gene:ENSG00000265269 gene_biotype:miRNA transcript_biotype:miRNA	chrHSCHR15_1_CTG8	 66332571	 66332670	+	ENSG00000265269	ENST00000582686	NA	NA	NA	NA	NA	Unknown
CUST_34915_PI429285431	0.91727835	A	0.9268882	A	0.993361095120845	0	lncRNA	36337-2_{3001..3745}	n341833|AK128448|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4312|NULL|-0.9415390|-0.2333510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341833|AK128448|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4312|NULL|-0.9415390|-0.2333510	chr6	 37538491	 37539235	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4606_PI429285431	5.873814	P	6.374992	P	0.706529644795942	0	lncRNA	4554-1_{1..262}	"transcript_id ""ENST00000604480.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604480.1"" | genecode_v17"	chr13	 44361727	 44361988	+	ENSG00000270522.1	ENST00000604480.1	RP11-168P13.1	RP11-168P13.1-001	ENOX1	NA	chr13:44351727-44361116	inter
CUST_34874_PI429285431	0.8936739	A	0.8965094	A	0.998036511340373	0	lncRNA	36300-1_{1..1926}	n341788|AK127715|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4265|NULL|-1.2456300|-0.2532337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341788|AK127715|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4265|NULL|-1.2456300|-0.2532337	chr9	129281118	129283043	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22762_PI429285431	7.404855	P	7.6752276	P	0.829105387898405	0	lncRNA	24344-2_{3001..3413}	lnc-STUB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STUB1-1:1	chr16	   742001	   742413	+	lnc-STUB1-1	lnc-STUB1-1:1	ENSG00000261659.2	LA16c-313D11.12	FBXL16	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_WDR24:range=chr16:734734-7396405'pad=0,hg19_refFlat_WDR24:range=chr16:734734-7396405'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90chr16:742500-752413"	NA	inner
CUST_37706_PI429285431	3.5031586	P	4.50383	P	0.499767364627495	0	lncRNA	38800-1_{1..256}	n346201|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1751|NULL|-1.3866000|-0.1244220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346201|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1751|NULL|-1.3866000|-0.1244220	chr9	 65602618	 65602873	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25505_PI429285431	1.6483058	A	1.9070362	A	0.835823136671027	0	lncRNA	27035-1_{1..367}	lnc-CLIC5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLIC5-1:1	chr6	 46097327	 46097693	-	lnc-CLIC5-1	lnc-CLIC5-1:1	ENSG00000231769.1	RP1-8B1.4	ENPP4	NA	chr6:46097701-46107443	inter
CUST_28421_PI429285431	0.90135044	A	0.9022659	A	0.999365652765419	0	lncRNA	30081-1_{1..323}	n325744|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044735|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044735|-0.9791880|-0.1614163	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325744|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044735|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044735|-0.9791880|-0.1614163	chr13	 43704060	 43704382	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46891_PI429285431	2.5776894	A	2.42364	A	1.11268822001365	0	lncRNA	51014-1_{1..2500}	"gi|336176043|ref|NR_038410.1| Homo sapiens BZRAP1 antisense RNA 1 (BZRAP1-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336176043|ref|NR_038410.1| Homo sapiens BZRAP1 antisense RNA 1 (BZRAP1-AS1), transcript variant 1, non-coding RNA"	Chr17	 56402811	 56405310	+	100506779	NR_038410.1	NA	NA	NA	"hg19_refFlat_SUPT4H1:range=chr17:56423607-564294965'pad=0,hg19_refFlat_SUPT4H1:range=chr17:56423607-564294965'pad=0 3'pad=0 strand=- repeatMasking=none,-97.40;hg19_refFlat_BZRAP1:range=chr17:56381731-564052815'pad=0,hg19_refFlat_BZRAP1:range=chr17:56381731-564052815'pad=0 3'pad=0 strand=- repeatMasking=none,-100.90"	NA	inter
CUST_1289_PI429285431	0.8963077	A	1.2925847	A	0.759816528077148	0	lncRNA	1279-1_{1..728}	"transcript_id ""ENST00000455703.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455703.1"" | genecode_v17"	chr3	  3356990	  3357717	-	ENSG00000223727.2	ENST00000455703.1	AC026188.1	AC026188.1-001	NA	NA	NA	inter
CUST_2315_PI429285431	0.9511532	A	1.118151	A	0.890694258846517	0	lncRNA	2307-1_{1..622}	"transcript_id ""ENST00000509718.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509718.1"" | genecode_v17"	chr5	114366970	114367591	-	ENSG00000251132.1	ENST00000509718.1	RP11-438C19.2	RP11-438C19.2-001	NA	NA	NA	inter
CUST_20330_PI429285431	3.3507466	P	4.130931	P	0.582292361998989	0	lncRNA	21973-1_{1..2883}	lnc-RP1-239B22.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP1-239B22.1.1-1:1	chr11	 17402196	 17405078	+	lnc-RP1-239B22.1.1-1	lnc-RP1-239B22.1.1-1:1	ENSG00000260196.1	RP1-239B22.5	ABCC8	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr11:17414432-17415078"	NA	inter
CUST_20279_PI429285431	1.1294509	A	0.9064899	A	1.16712655076337	0	lncRNA	21922-1_{1..531}	lnc-AGR3-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AGR3-1:8	chr7	 17320865	 17321395	-	lnc-AGR3-1	lnc-AGR3-1:8	ENSG00000237773.1	AC003075.4	NA	NA	NA	inter
LNCA_21_P0003730	2.1799943	A	3.5879543	P	0.376844175583865	0	lncRNA	TCONS_00008450	NA	NA	NA	NA	XLOC_003909	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003909), lincRNA [TCONS_00008450]"	chr4:25432869-25432810	hs|4p15.2	Agilent_HUMAN_G3V2	TCONS_00008450	TCONS_00008450	chr4	 25432810	 25432869	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006651	0.90740144	A	1.7535185	A	0.556279922014588	0	lncRNA	ENST00000456526	NA	NA	NA	NA	XLOC_008386	NA	ENST00000456526	NA	NA	"BROAD Institute lincRNA (XLOC_008386), lincRNA [TCONS_00017786]"	chr10:9015369-9015428	hs|10p14	Agilent_HUMAN_G3V2	ENST00000456526	ENST00000456526	chr10	  9015369	  9015428	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47227_PI429285431	0.98665285	A	0.94562984	A	1.02884311710735	0	lncRNA	51302-1_{1..2241}	"gi|408830572|ref|NR_073207.1| Homo sapiens sel-1 suppressor of lin-12-like 2 (C. elegans) (SEL1L2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|408830572|ref|NR_073207.1| Homo sapiens sel-1 suppressor of lin-12-like 2 (C. elegans) (SEL1L2), transcript variant 3, non-coding RNA"	Chr20	 13830044	 13832284	-	80343	NR_073207.1	NA	NA	NA	NA	NA	inter
CUST_7052_PI429285431	5.1770644	P	5.50149	P	0.798616287143144	0	lncRNA	6997-1_{1..528}	"transcript_id ""ENST00000602277.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602277.1"" | genecode_v17"	chrX	 45624175	 45624702	-	ENSG00000269902.1	ENST00000602277.1	RP6-99M1.3	RP6-99M1.3-001	NA	NA	NA	inter
LNCA_21_P0004502	0.91199195	A	1.7848822	A	0.546051811039332	0	lncRNA	TCONS_00010676	NA	NA	NA	NA	XLOC_004360	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004360), lincRNA [TCONS_00010676]"	chr5:42157894-42157953	hs|5p13.1	Agilent_HUMAN_G3V2	TCONS_00010676	TCONS_00010676	chr5	 42157894	 42157953	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7243_PI429285431	0.89141524	A	0.9001913	A	0.993935363355306	0	lncRNA	7900-1_{1..332}	"transcript_id ""ENST00000410454.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410454.1"" | genecode_v17"	chr7	103124655	103124986	-	ENSG00000222386.1	ENST00000410454.1	RN7SKP86	RN7SKP86-201	RELN	NA	chr7:103114655-103134986	inner
CUST_49296_PI429285431	0.8911222	A	1.3653462	A	0.719853882489709	0	lncRNA	53113-1_{1..2411}	hg19_lincRNAsTranscripts_TCONS_l2_00022778 range=chr5:7299486-7304971 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022778 range=chr5:7299486-7304971 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	  7299486	  7301896	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20"	NA	inter
CUST_40933_PI429285431	8.876073	P	9.129775	P	0.838741415180881	0	lncRNA	41617-1_{1..1011}	n410884|NR_038342|lncRNA|Homosapiens||RefGeneNoncode|NR_038342||-1.1289800|-0.3921781	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410884|NR_038342|lncRNA|Homosapiens||RefGeneNoncode|NR_038342||-1.1289800|-0.3921781	chr4	 79892901	 79893911	+	NA	NA	NA	NA	NAA11	NA	chr4:80238272-80239953	inter
CUST_29008_PI429285431	0.925141	A	0.9240247	A	1.0007740596273	0	lncRNA	30732-1_{1..554}	n326492|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030260|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030260|-1.0446500|-0.2907954	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326492|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030260|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030260|-1.0446500|-0.2907954	chr1	106271768	106272321	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42255_PI429285431	0.8900552	A	0.89832723	A	0.994282672210563	0	lncRNA	44519-1_{1..161}	ENST00000364357 ncrna:rRNA chromosome:GRCh37:9:111754689:111754849:-1 gene:ENSG00000201227 gene_biotype:rRNA transcript_biotype:rRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364357 ncrna:rRNA chromosome:GRCh37:9:111754689:111754849:-1 gene:ENSG00000201227 gene_biotype:rRNA transcript_biotype:rRNA	chr9	111754689	111754849	-	ENSG00000201227	ENST00000364357	NA	NA	CTNNAL1	NA	chr9:111744689-111764849	inner
CUST_9735_PI429285431	1.0727437	A	0.9808075	A	1.06579960239363	0	lncRNA	11252-1_{1..996}	lnc-C11orf89-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C11orf89-1:3	chr11	  2007850	  2008845	-	lnc-C11orf89-1	lnc-C11orf89-1:3	XLOC_009356	linc-CTSD-3	NA	NA	NA	inter
CUST_24339_PI429285431	0.9764588	A	0.9243813	A	1.03675679296507	0	lncRNA	25892-1_{1..564}	lnc-CCNK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCNK-1:1	chr14	 99730898	 99731461	+	lnc-CCNK-1	lnc-CCNK-1:1	ENSG00000235785.1	AL109767.1	BCL11B	NA	chr14:99720898-99737822	inner
CUST_38531_PI429285431	13.757655	P	13.238123	P	1.43349015858234	0	lncRNA	39543-1_{1..2319}	n383209|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002iyr.1||2.9129500|-0.2233393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383209|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002iyr.1||2.9129500|-0.2233393	chr17	 58511038	 58513356	-	NA	NA	NA	NA	APPBP2	NA	chr17:58511039-58523357	inter
CUST_112_PI429201921	3.3606493	P	3.8052478	P	0.734788778870367	0	lncRNA	111-2_{3001..3321}	TC21000570.hg.1	TCONS_l2_00016966-XLOC_l2_008976 // Broad TUCP // linc-POTED-3 chr21:+:14721584-14724906 // chr21 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr21:+:14721584-14724906	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00016966-XLOC_l2_008976	linc-POTED-3	chr21	 14721584	 14724906	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42927_PI429285431	3.4268298	P	3.3347158	P	1.06593096130283	0	lncRNA	46037-1_{1..123}	ENST00000517020 ncrna:snoRNA chromosome:GRCh37:2:131687335:131687457:-1 gene:ENSG00000252829 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517020 ncrna:snoRNA chromosome:GRCh37:2:131687335:131687457:-1 gene:ENSG00000252829 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	131687335	131687457	-	ENSG00000252829	ENST00000517020	NA	NA	ARHGEF4	NA	chr2:131677335-131697457	inner
CUST_41457_PI429285431	0.92525053	A	1.0125957	A	0.941253239361692	0	lncRNA	42642-1_{1..110}	ENST00000401262 ncrna:miRNA chromosome:GRCh37:2:137301941:137302050:1 gene:ENSG00000216081 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401262 ncrna:miRNA chromosome:GRCh37:2:137301941:137302050:1 gene:ENSG00000216081 gene_biotype:miRNA transcript_biotype:miRNA	chr2	137301941	137302050	+	ENSG00000216081	ENST00000401262	NA	NA	NA	NA	NA	inter
CUST_49290_PI429285431	6.0383716	P	6.005344	P	1.02315704342359	0	lncRNA	53108-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00022139 range=chr5:1614371-1625423 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022139 range=chr5:1614371-1625423 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	  1617371	  1620370	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12132_PI429285431	1.4240693	A	2.8570378	A	0.370368036082937	0	lncRNA	13729-1_{1..424}	lnc-KCNJ6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-KCNJ6-1:1	chr21	 39382780	 39383203	-	lnc-KCNJ6-1	lnc-KCNJ6-1:1	XLOC_014071	linc-KCNJ6	NA	NA	NA	inter
CUST_24641_PI429285431	7.8692217	P	8.197038	P	0.796741539833202	0	lncRNA	26190-1_{1..383}	lnc-ACSBG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACSBG1-1:1	chr15	 78556399	 78556781	-	lnc-ACSBG1-1	lnc-ACSBG1-1:1	ENSG00000259708.1	RP11-762H8.3	DNAJA4	NA	chr15:78556487-78566498	inner
CUST_35319_PI429285431	4.697635	P	4.768011	P	0.952389750698112	0	lncRNA	36725-2_{3001..3357}	n342350|AK126236|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4842|NULL|-0.8124410|-0.2853588	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342350|AK126236|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4842|NULL|-0.8124410|-0.2853588	chr19	 22706796	 22707152	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30730_PI429285431	0.89292467	A	0.89686865	A	0.997269974698135	0	lncRNA	32513-1_{1..764}	n336282|Y13267|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325762|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325762|-0.7269440|-0.1728546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336282|Y13267|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325762|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325762|-0.7269440|-0.1728546	chr6	  1203692	  1204455	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19370_PI429285431	5.0959945	P	4.265074	P	1.77881996214368	0	lncRNA	21032-2_{3001..5890}	lnc-SEC16B.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC16B.1-2:1	chr1	178010032	178012921	-	lnc-SEC16B.1-2	lnc-SEC16B.1-2:1	ENSG00000254154.3	SEC16B	NA	NA	NA	inter
CUST_6015_PI429285431	5.023117	P	5.0624337	P	0.973115732624383	0	lncRNA	5940-1_{1..2682}	"transcript_id ""ENST00000582866.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582866.1"" | genecode_v17"	chr17	 79836301	 79838982	-	ENSG00000263731.1	ENST00000582866.1	RP11-498C9.15	RP11-498C9.15-001	THOC4	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00chr17:79845711-79848982"	NA	inter
CUST_26871_PI429285431	0.9221312	A	1.4666501	A	0.685620000204902	0	lncRNA	28388-1_{1..2239}	n323946|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054936|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054936|-0.2585960|-0.1759093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323946|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054936|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054936|-0.2585960|-0.1759093	chr9	135880381	135882619	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012154	0.9019337	A	0.9051451	A	0.997776502784683	0	lncRNA	TCONS_l2_00016812	NA	NA	NA	NA	XLOC_l2_008692	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008692), lincRNA [TCONS_l2_00016812]"	chr20:58698882-58821120	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_l2_00016812	TCONS_l2_00016812	chr20	 58698882	 58821120	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16014_PI429285431	0.89527583	A	0.89620036	A	0.999359369928283	0	lncRNA	17710-1_{1..3000}	lnc-GPR31-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR31-1:1	chr6	167653577	167656576	-	lnc-GPR31-1	lnc-GPR31-1:1	XLOC_005921	linc-GPR31-2	UNC93A	NA	chr6:167643577-167665400	inter
CUST_13998_PI429285431	1.5846479	A	1.4616538	A	1.08899256181747	0	lncRNA	15644-1_{1..631}	lnc-UNC5CL-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UNC5CL-1:3	chr6	 40854963	 40855593	-	lnc-UNC5CL-1	lnc-UNC5CL-1:3	XLOC_005715	linc-LRFN2-1	NA	NA	NA	inter
CUST_19503_PI429285431	6.594981	P	6.6361613	P	0.971859522795119	0	lncRNA	21159-1_{1..547}	lnc-COL1A1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COL1A1-3:1	chr17	 48238382	 48238928	-	lnc-COL1A1-3	lnc-COL1A1-3:1	ENSG00000253730.1	RP11-893F2.13	SGCA	NA	chr17:48243366-48248637	inter
LNCA_21_P0007613	2.1566205	A	3.0553675	P	0.536352358256749	0	lncRNA	TCONS_00020538	NA	NA	NA	NA	XLOC_009852	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009852), lincRNA [TCONS_00020538]"	chr12:102349611-102349670	hs|12q23.2	Agilent_HUMAN_G3V2	TCONS_00020538	TCONS_00020538	chr12	102349611	102349670	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6406_PI429285431	4.0760417	P	4.272795	P	0.872511892033284	0	lncRNA	6342-1_{1..2291}	"transcript_id ""ENST00000599944.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599944.1"" | genecode_v17"	chr19	 24000401	 24002691	-	ENSG00000267924.1	ENST00000599944.1	RP11-255H23.4	RP11-255H23.4-001	NA	NA	NA	inter
CUST_44240_PI429285431	4.265361	P	4.5590825	P	0.8157949604142	0	lncRNA	48889-1_{1..1513}	"gi|310119275|ref|XR_108485.1| PREDICTED: Homo sapiens uncharacterized LOC442092 (ARVP6125), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119275|ref|XR_108485.1| PREDICTED: Homo sapiens uncharacterized LOC442092 (ARVP6125), misc_RNA"	NA	NA	NA	NA	NA	XR_108485.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013555	2.8618796	A	3.9123516	P	0.482810179801248	0	lncRNA	XR_108932	XR_108932	XR_108932	NA	Hs.522002	LOC100506304	uncharacterized LOC100506304	ENST00000428006	THC2681960	NA	"PREDICTED: Homo sapiens hypothetical LOC100506304, transcript variant 2 (LOC100506304), miscRNA [XR_108932]"	chr9:13487447-13487506	hs|9p23	Agilent_HUMAN_G3V2	XR_108932	XR_108932	chr9	 13487447	 13487506	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43891_PI429285431	6.8527813	P	7.1779814	P	0.798187671045888	0	lncRNA	48609-1_{1..3000}	"gi|385275067|ref|NR_047655.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385275067|ref|NR_047655.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 4, non-coding RNA"	Chr2	 97258892	 97261891	-	55683	NR_047655.1	NA	NA	NA	NA	NA	inter
CUST_18167_PI429285431	1.5844411	A	1.3423367	A	1.18271658391938	0	lncRNA	19902-1_{1..1403}	lnc-DLK1-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DLK1-8:1	chr14	101423105	101424507	+	lnc-DLK1-8	lnc-DLK1-8:1	ENSG00000225746	AL132709.5	NA	NA	NA	inter
CUST_21829_PI429285431	0.88898605	A	0.8842232	A	1.00330681152665	0	lncRNA	23439-1_{1..560}	lnc-TRPV3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TRPV3-1:1	chr17	  3481858	  3482417	-	lnc-TRPV3-1	lnc-TRPV3-1:1	ENSG00000263338.1	RP11-235E17.3	TRPV1	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00chr17:3471858-3492147"	NA	inner
LNCA_21_P0010824	0.8926325	A	0.8917359	A	1.00062166891816	0	lncRNA	TCONS_l2_00003011	NA	NA	NA	NA	XLOC_l2_001573	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001573), lincRNA [TCONS_l2_00003011]"	chr10:44002819-44002878	hs|10q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00003011	TCONS_l2_00003011	chr10	 44002819	 44002878	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20322_PI429285431	0.92007565	A	1.2249243	A	0.809527137824814	0	lncRNA	21965-1_{1..470}	lnc-DDX20-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DDX20-2:1	chr1	112452745	112453214	+	lnc-DDX20-2	lnc-DDX20-2:1	ENSG00000237556.1	KCND3-AS1	KCND3	NA	chr1:112442745-112462783	inner
CUST_26054_PI429285431	5.658206	P	5.80884	P	0.900854490319601	0	lncRNA	27568-1_{1..691}	lnc-ASPSCR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASPSCR1-1:1	chr17	 79905014	 79905704	+	lnc-ASPSCR1-1	lnc-ASPSCR1-1:1	ENSG00000235296.1	AC137723.5	MYADML2	NA	chr17:79897521-79905109	inner
LNCA_21_P0014131	2.753663	A	4.246921	P	0.355209482302645	0	lncRNA	XR_108524	XR_108524	XR_108524	NA	NA	LOC100505729	uncharacterized LOC100505729	ENST00000485024	THC2707919	NA	"PREDICTED: Homo sapiens hypothetical LOC100505729 (LOC100505729), miscRNA [XR_108524]"	chr3:184533887-184533946	hs|3q27.2	Agilent_HUMAN_G3V2	XR_108524	XR_108524	chr3	184533887	184533946	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36422_PI429285431	3.9378672	P	3.7589219	P	1.13205597922383	0	lncRNA	37638-1_{1..675}	n344937|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_486|NULL|-1.5566300|-0.1822046	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344937|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_486|NULL|-1.5566300|-0.1822046	chr7	109219693	109220367	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16780_PI429285431	1.2558261	A	1.5629562	A	0.808247978970573	0	lncRNA	18489-1_{1..405}	lnc-COIL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COIL-2:1	chr17	 55162201	 55162605	-	lnc-COIL-2	lnc-COIL-2:1	XLOC_012530	linc-COIL-2	AKAP1	NA	chr17:55162553-55172434	inter
CUST_5996_PI429285431	1.6366448	A	1.0158628	A	1.53770845660879	0	lncRNA	5922-1_{1..777}	"transcript_id ""ENST00000592569.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592569.1"" | genecode_v17"	chr17	 76356534	 76357310	+	ENSG00000266970.1	ENST00000592569.1	RP11-806H10.4	RP11-806H10.4-001	PGS1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20chr17:76374735-76379992"	NA	inter
CUST_1633_PI429285431	5.1049194	P	5.498694	P	0.761135597435805	0	lncRNA	1618-1_{1..749}	"transcript_id ""ENST00000602127.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602127.1"" | genecode_v17"	chr3	195408487	195409235	+	ENSG00000242086.3	ENST00000602127.1	AC069513.3	AC069513.3-033	NA	NA	NA	inter
CUST_6134_PI429285431	1.0779433	A	1.249458	A	0.887909966035782	0	lncRNA	6060-1_{1..516}	"transcript_id ""ENST00000580883.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580883.1"" | genecode_v17"	chr18	 25158820	 25159335	-	ENSG00000264151.1	ENST00000580883.1	RP11-739N10.1	RP11-739N10.1-002	NA	NA	NA	inter
CUST_7938_PI429285431	8.649467	P	8.66911	P	0.986476781468373	0	lncRNA	9550-1_{1..2094}	lnc-DDX39A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DDX39A-1:1	chr19	 14497651	 14499744	-	lnc-DDX39A-1	lnc-DDX39A-1:1	ENSG00000247801	ENST00000502238	CD97	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40chr19:14491956-14509039"	NA	inner
CUST_25323_PI429285431	3.3293712	P	4.071528	P	0.597844917796295	0	lncRNA	26855-1_{1..318}	lnc-FSIP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FSIP1-2:1	chr15	 40093402	 40093719	-	lnc-FSIP1-2	lnc-FSIP1-2:1	ENSG00000259580.1	RP11-37C7.1	GPR176	NA	chr15:40092931-40103534	inner
CUST_15734_PI429285431	2.1091452	A	1.1365056	A	1.96242783189378	0	lncRNA	17419-1_{1..351}	lnc-SNAP91-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SNAP91-1:1	chr6	 84445991	 84446341	-	lnc-SNAP91-1	lnc-SNAP91-1:1	XLOC_005776	linc-SNAP91	NA	NA	NA	inter
CUST_6457_PI429285431	7.0407853	P	7.063712	P	0.984234027419174	0	lncRNA	6398-1_{1..2908}	"transcript_id ""ENST00000591212.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591212.1"" | genecode_v17"	chr19	 32592994	 32595901	-	ENSG00000267204.1	ENST00000591212.1	AC011518.1	AC011518.1-001	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30"	NA	inter
CUST_16331_PI429285431	6.7868423	P	7.179342	P	0.761808505172726	0	lncRNA	18032-1_{1..528}	lnc-RAD1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAD1-3:1	chr5	 34652531	 34653058	-	lnc-RAD1-3	lnc-RAD1-3:1	XLOC_004775	linc-C1QTNF3-1	RAI14	NA	chr5:34656433-34662810	inter
CUST_21462_PI429285431	3.0191216	A	2.7890148	A	1.17292177521067	0	lncRNA	23081-1_{1..462}	lnc-PRPF18-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRPF18-1:3	chr10	 13686917	 13687378	+	lnc-PRPF18-1	lnc-PRPF18-1:3	ENSG00000239665.1	RP11-295P9.3	FRMD4A	NA	chr10:13685706-13697279	inner
CUST_21921_PI429285431	0.8963237	A	0.8878145	A	1.00591555619345	0	lncRNA	23530-1_{1..725}	lnc-RAD51C-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAD51C-1:2	chr17	 56634170	 56634894	+	lnc-RAD51C-1	lnc-RAD51C-1:2	ENSG00000264672.1	RP11-112H10.4	TEX14	"hg19_refFlat_C17orf47:range=chr17:56619176-566215475'pad=0,hg19_refFlat_C17orf47:range=chr17:56619176-566215475'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_SEPT4:range=chr17:56597787-566035905'pad=0,hg19_refFlat_SEPT4:range=chr17:56597787-566035905'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPT4:range=chr17:56597787-566093245'pad=0,hg19_refFlat_SEPT4:range=chr17:56597787-566093245'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPT4:range=chr17:56597787-566065355'pad=0,hg19_refFlat_SEPT4:range=chr17:56597787-566065355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPT4:range=chr17:56597787-566180345'pad=0,hg19_refFlat_SEPT4:range=chr17:56597787-566180345'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPT4:range=chr17:56599243-566093245'pad=0,hg19_refFlat_SEPT4:range=chr17:56599243-566093245'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPT4:range=chr17:56597787-566180625'pad=0,hg19_refFlat_SEPT4:range=chr17:56597787-566180625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70chr17:56634038-56644338"	NA	inner
CUST_21712_PI429285431	2.0003772	A	1.828219	A	1.12674277569839	0	lncRNA	23322-1_{1..461}	lnc-MST1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MST1-1:1	chr3	 49679053	 49679513	-	lnc-MST1-1	lnc-MST1-1:1	ENSG00000235120.1	BSN-AS1	BSN	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00chr3:49669053-49689202"	NA	inner
CUST_129_PI429201921	8.475409	P	8.958988	P	0.715201169134702	0	lncRNA	120-1_{1..3000}	TC16001511.hg.1	 TCONS_l2_00009690-XLOC_l2_005188 // Broad TUCP // linc-TP53TG3B-18 chr16:+:32883268-32884672 // chr16 // 100 // 100 // 0 // --- // 0///TCONS_l2_00009689-XLOC_l2_005188 // Broad TUCP // linc-TP53TG3B-18 chr16:+:32881354-32884886 // chr16 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr16:+:32881354-32884886	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00009689-XLOC_l2_005188	linc-TP53TG3B-18	chr16	 32881354	 32884886	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5647_PI429285431	3.1363091	P	3.4297118	P	0.815975250886719	0	lncRNA	5575-1_{1..555}	"transcript_id ""ENST00000561519.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561519.1"" | genecode_v17"	chr16	 80864391	 80864945	-	ENSG00000260896.1	ENST00000561519.1	RP11-314O13.1	RP11-314O13.1-002	NA	NA	NA	inter
LNCA_21_P0014203	2.5057547	A	2.1619449	A	1.2691035606997	0	lncRNA	XR_108816	XR_108816	XR_108816	NA	NA	LOC100506881	uncharacterized LOC100506881	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506881, transcript variant 2 (LOC100506881), miscRNA [XR_108816]"	chr7:131007867-131007808	hs|7q32.3	Agilent_HUMAN_G3V2	XR_108816	XR_108816	chr7	131007808	131007867	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9531_PI429285431	9.710991	P	9.932003	P	0.85796339406012	0	lncRNA	11042-1_{1..430}	lnc-NFAM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NFAM1-1:1	chr22	 42833694	 42834123	-	lnc-NFAM1-1	lnc-NFAM1-1:1	XLOC_014389	linc-NFAM1	NFAM1	"hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60chr22:42823694-42828401"	NA	inter
CUST_21554_PI429285431	0.9057608	A	1.2776769	A	0.772755487974122	0	lncRNA	23170-1_{1..552}	lnc-ZNF362-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF362-1:1	chr1	 33791222	 33791773	+	lnc-ZNF362-1	lnc-ZNF362-1:1	ENSG00000225313.1	RP11-415J8.3	PHC2	NA	chr1:33781222-33801644	inner
CUST_49776_PI429285431	0.90870905	A	0.90084743	A	1.00546413395904	0	lncRNA	53536-1_{1..1523}	hg19_lincRNAsTranscripts_TCONS_l2_00025889 range=chr7:56646792-56666464 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025889 range=chr7:56646792-56666464 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 56646792	 56648314	+	NA	NA	NA	NA	LOC100289196	NA	chr7:56665244-56671246	inter
CUST_40949_PI429285431	3.7659009	P	4.253003	P	0.713456759503978	0	lncRNA	41627-2_{3001..6000}	n410935|NR_038397|lncRNA|Homosapiens||RefGeneNoncode|NR_038397||1.7563300|-0.4213743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n410935|NR_038397|lncRNA|Homosapiens||RefGeneNoncode|NR_038397||1.7563300|-0.4213743	chr1	172110723	172113722	-	NA	NA	NA	NA	DNM3	NA	chr1:172097723-172123975	inner
LNCA_21_P0012313	3.7617311	P	4.8167434	P	0.481293118167679	0	lncRNA	AB051440	NA	AB051440	NA	Hs.613849	LOC440792	proline dehydrogenase (oxidase) 1 pseudogene	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009301), lincRNA [TCONS_l2_00018152]"	chr22:20299201-20299260	hs|22q11.21	Agilent_HUMAN_G3V2	AB051440	AB051440	chr22	 20299201	 20299260	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48812_PI429285431	5.0616655	P	5.170086	P	0.927603070092875	0	lncRNA	52650-1_{1..574}	hg19_lincRNAsTranscripts_TCONS_l2_00014335 range=chr2:242823534-242825188 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014335 range=chr2:242823534-242825188 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	242823534	242824107	+	NA	NA	NA	NA	C2orf85	NA	chr2:242813534-242815482	inter
CUST_13729_PI429285431	0.99298537	A	1.2038363	A	0.864027460542421	0	lncRNA	15369-1_{1..509}	lnc-STXBP6-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STXBP6-1:6	chr14	 25581978	 25582486	-	lnc-STXBP6-1	lnc-STXBP6-1:6	XLOC_010978	linc-STXBP6-1	NA	NA	NA	inter
CUST_16097_PI429285431	0.9043857	A	1.1121837	A	0.865857790743798	0	lncRNA	17802-1_{1..422}	lnc-FSHB-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-FSHB-2:2	chr11	 29651911	 29652332	+	lnc-FSHB-2	lnc-FSHB-2:2	XLOC_009097	linc-FSHB-1	NA	NA	NA	inter
CUST_10835_PI429285431	3.1098635	P	2.720073	A	1.31020312976811	0	lncRNA	12371-1_{1..455}	lnc-JPH4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JPH4-1:2	chr14	 24198787	 24199241	-	lnc-JPH4-1	lnc-JPH4-1:2	XLOC_010971	linc-JPH4-2	NA	NA	NA	inter
CUST_2255_PI429285431	3.6837938	P	3.3811336	P	1.23341662723515	0	lncRNA	2247-1_{1..1046}	"transcript_id ""ENST00000440769.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000440769.3"" | genecode_v17"	chr5	 90575914	 90576959	-	ENSG00000234292.3	ENST00000440769.3	RP11-213H15.1	RP11-213H15.1-001	NA	NA	NA	inter
CUST_23056_PI429285431	4.715048	P	4.4266243	P	1.22130514078832	0	lncRNA	24627-1_{1..252}	lnc-SLC25A37-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A37-3:1	chr8	 23646935	 23647186	+	lnc-SLC25A37-3	lnc-SLC25A37-3:1	ENSG00000253471.1	RP11-175E9.1	NA	NA	NA	inter
CUST_49286_PI429285431	4.224409	P	5.0464134	P	0.565655506257234	0	lncRNA	53105-1_{1..1053}	hg19_lincRNAsTranscripts_TCONS_l2_00023637 range=chr5:1599039-1634120 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023637 range=chr5:1599039-1634120 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	  1599039	  1600091	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7362_PI429285431	5.2917004	P	5.5679293	P	0.825746640432276	0	lncRNA	9008-1_{1..2446}	lnc-VPRBP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VPRBP-1:1	chr3	 51429567	 51432012	-	lnc-VPRBP-1	lnc-VPRBP-1:1	ENSG00000250864	ENST00000506856	DOCK3	"hg19_refFlat_RBM15B:range=chr3:51428831-514315035'pad=0,hg19_refFlat_RBM15B:range=chr3:51428831-514315035'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.10chr3:51419567-51421629"	NA	inner
CUST_23506_PI429285431	4.4549837	P	4.4849815	P	0.979421791129385	0	lncRNA	25073-1_{1..582}	lnc-VCAN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VCAN-1:1	chr5	 83695403	 83695984	+	lnc-VCAN-1	lnc-VCAN-1:1	ENSG00000250320.1	CTD-2269F5.1	NA	NA	NA	inter
CUST_4815_PI429285431	11.648924	P	11.814364	P	0.891656536292616	0	lncRNA	4759-1_{1..501}	"transcript_id ""ENST00000556713.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556713.1"" | genecode_v17"	chr14	 50863731	 50864231	+	ENSG00000258857.1	ENST00000556713.1	RP11-247L20.3	RP11-247L20.3-001	CDKL1	NA	chr14:50853731-50862617	inter
LNCA_21_P0004457	2.6401842	A	3.8702726	P	0.426291324419242	0	lncRNA	TCONS_00010530	NA	NA	NA	NA	XLOC_005050	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005050), lincRNA [TCONS_00010530]"	chr5:149017201-149017142	hs|5q32	Agilent_HUMAN_G3V2	TCONS_00010530	TCONS_00010530	chr5	149017142	149017201	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23259_PI429285431	7.8863883	P	8.062458	P	0.885111001746552	0	lncRNA	24831-1_{1..794}	lnc-NMNAT3-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NMNAT3-3:3	chr3	140173499	140174292	-	lnc-NMNAT3-3	lnc-NMNAT3-3:3	ENSG00000249290.1	RP11-68L1.2	CLSTN2	NA	chr3:140163499-140183573	inner
LNCA_21_P0007782	4.5958467	P	3.9803846	P	1.53204863876646	0	lncRNA	TCONS_00020972	NA	NA	NA	NA	XLOC_010242	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010242), lincRNA [TCONS_00020972]"	chr12:126929825-126929766	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020972	TCONS_00020972	chr12	126929766	126929825	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6939_PI429285431	3.5614233	P	3.1996455	A	1.28500840869743	0	lncRNA	6888-1_{1..673}	"transcript_id ""ENST00000431488.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431488.1"" | genecode_v17"	chr22	 21666029	 21666701	-	ENSG00000206142.5	ENST00000431488.1	FAM230C	FAM230C-004	RIMBP3B	NA	chr22:21656029-21689331	inter
LNCA_19_P00317045	0.90070343	A	0.9204178	A	0.986427981753627	0	lncRNA	ENST00000492522	NA	NA	NA	NA	XLOC_012227	NA	ENST00000492522	NA	NA	"BROAD Institute lincRNA (XLOC_012227), lincRNA [TCONS_00025176]"	chr17:46782925-46782984	hs|17q21.32	Agilent_HUMAN_G3V2	ENST00000492522	ENST00000492522	chr17	 46782925	 46782984	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35433_PI429285431	9.752001	P	9.167181	P	1.49985184635734	0	lncRNA	36839-2_{3001..4338}	n342494|D42053|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4988|NULL|14.4542000|-0.2019499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342494|D42053|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4988|NULL|14.4542000|-0.2019499	chr16	 84090370	 84091707	-	NA	NA	NA	NA	MBTPS1	NA	chr16:84087368-84150517	inner
LNCA_21_P0006055	7.863983	P	7.975237	P	0.925783015390997	0	lncRNA	ENST00000425153	NA	NA	NA	NA	XLOC_007568	NA	ENST00000425153	NA	NA	"BROAD Institute lincRNA (XLOC_007568), lincRNA [TCONS_00015754]"	chr9:129292563-129292622	hs|9q33.3	Agilent_HUMAN_G3V2	ENST00000425153	ENST00000425153	chr9	129292563	129292622	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003466	0.9069124	A	0.9241868	A	0.988097697853545	0	lncRNA	ENST00000508292	NA	NA	NA	NA	XLOC_003961	NA	ENST00000508292	NA	NA	"BROAD Institute lincRNA (XLOC_003961), lincRNA [TCONS_00007764]"	chr4:59428405-59428346	hs|4q12	Agilent_HUMAN_G3V2	ENST00000508292	ENST00000508292	chr4	 59428346	 59428405	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44988_PI429285431	1.6154087	A	2.054869	A	0.737410416046973	0	lncRNA	49497-1_{1..999}	"gi|392871547|ref|NR_003602.2| Homo sapiens FK506 binding protein 6, 36kDa pseudogene (LOC541473), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|392871547|ref|NR_003602.2| Homo sapiens FK506 binding protein 6, 36kDa pseudogene (LOC541473), non-coding RNA"	NW_003871064.1	  2921185	  2922183	-	541473	NR_003602.3	NA	NA	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00"	NA	Unknown
CUST_15788_PI429285431	10.324931	P	10.276033	P	1.0344744405431	0	lncRNA	17478-1_{1..383}	lnc-NAPB-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAPB-1:3	chr20	 23338592	 23338974	-	lnc-NAPB-1	lnc-NAPB-1:3	XLOC_013693	linc-CD93-1	GZF1	NA	chr20:23345021-23348754	inter
CUST_16415_PI429285431	1.0719742	A	1.1471655	A	0.94921624742734	0	lncRNA	18112-1_{1..1327}	lnc-POU3F3-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POU3F3-4:4	chr2	105128501	105129827	+	lnc-POU3F3-4	lnc-POU3F3-4:4	XLOC_001602	linc-POU3F3-5	NA	NA	NA	inter
CUST_9238_PI429285431	0.8923516	A	0.90077716	A	0.994176867385505	0	lncRNA	10748-1_{1..893}	lnc-PTCH1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PTCH1-3:5	chr9	 98637262	 98638154	-	lnc-PTCH1-3	lnc-PTCH1-3:5	ENSG00000175611	C9orf130	C9orf102	NA	chr9:98637900-98647552	inter
CUST_32448_PI429285431	0.8988	A	1.7015481	A	0.573256176818807	0	lncRNA	34120-1_{1..2502}	n339047|D82347|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1476|NULL|5.7001800|-0.2713882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339047|D82347|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1476|NULL|5.7001800|-0.2713882	chr2	182541194	182543695	-	NA	NA	NA	NA	NEUROD1	NA	chr2:182540833-182545392	inner
CUST_29899_PI429285431	11.800873	P	11.383227	P	1.3357462806312	0	lncRNA	31662-1_{1..262}	n333984|M15996|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194430|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194430|0.6028000|-0.1783879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333984|M15996|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194430|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194430|0.6028000|-0.1783879	chr11	102668127	102668388	-	NA	NA	NA	NA	MMP1	NA	chr11:102660641-102668966	inner
LNCA_21_P0007048	0.9126231	A	0.92509073	A	0.991395331322901	0	lncRNA	TCONS_00018684	NA	NA	NA	NA	XLOC_008408	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008408), lincRNA [TCONS_00018684]"	chr10:20895266-20896027	hs|10p12.31	Agilent_HUMAN_G3V2	TCONS_00018684	TCONS_00018684	chr10	 20895266	 20896027	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20883_PI429285431	0.90704906	A	1.1571927	A	0.840812696695809	0	lncRNA	22515-1_{1..1152}	lnc-DHRS7B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHRS7B-1:2	chr17	 21121402	 21122553	+	lnc-DHRS7B-1	lnc-DHRS7B-1:2	ENSG00000235530.2	AC087294.2	TMEM11	NA	chr17:21111402-21117908	inter
CUST_18847_PI429285431	0.91696846	A	1.758038	A	0.558229572865186	0	lncRNA	20541-1_{1..1524}	lnc-SEPT7L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SEPT7L-2:1	chr10	 38982029	 38983552	-	lnc-SEPT7L-2	lnc-SEPT7L-2:1	ENSG00000233867	RP11-453N3.4	NA	NA	NA	inter
CUST_21467_PI429285431	4.6785083	P	4.6916666	P	0.990920828313941	0	lncRNA	23086-1_{1..473}	lnc-SEC22C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC22C-2:1	chr3	 42695486	 42695958	-	lnc-SEC22C-2	lnc-SEC22C-2:1	ENSG00000230084.1	RP4-613B23.1	ZBTB47	NA	chr3:42695176-42705880	inner
LNCA_21_P0008756	0.9114878	A	0.9197625	A	0.994280832090369	0	lncRNA	TCONS_00023729	NA	NA	NA	NA	XLOC_011525	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011525), lincRNA [TCONS_00023729]"	chr15:74099319-74099260	hs|15q24.1	Agilent_HUMAN_G3V2	TCONS_00023729	TCONS_00023729	chr15	 74099260	 74099319	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29311_PI429285431	2.522361	P	1.55197	A	1.95937155317163	0	lncRNA	31062-1_{1..421}	n332497|DQ925693|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468699|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468699|-0.1666730|-0.2774744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332497|DQ925693|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468699|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468699|-0.1666730|-0.2774744	chr4	114294515	114294935	+	NA	NA	NA	NA	ANK2	NA	chr4:114284515-114304896	inner
CUST_40925_PI429285431	5.4256406	P	5.95475	P	0.692982391769013	0	lncRNA	41609-2_{3001..5879}	n410803|NR_038257|lncRNA|Homosapiens||RefGeneNoncode|NR_038257||19.4697000|-0.0852356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410803|NR_038257|lncRNA|Homosapiens||RefGeneNoncode|NR_038257||19.4697000|-0.0852356	chr21	 45776483	 45779361	+	NA	NA	NA	NA	TRPM2	NA	chr21:45773484-45862964	inner
CUST_23299_PI429285431	0.8879019	A	0.8916022	A	0.997438433911648	0	lncRNA	24870-1_{1..2000}	lnc-IQCF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IQCF2-1:1	chr3	 51908404	 51910403	+	lnc-IQCF2-1	lnc-IQCF2-1:1	ENSG00000235455.1	IQCF5-AS1	IQCF5	"hg19_refFlat_IQCF5:range=chr3:51907749-519095475'pad=0,hg19_refFlat_IQCF5:range=chr3:51907749-519095475'pad=0 3'pad=0 strand=- repeatMasking=none,-97.40chr3:51907737-51909600"	NA	inner
CUST_30576_PI429285431	10.020935	P	9.771207	P	1.18898292774506	0	lncRNA	32358-1_{1..550}	n335816|X54533|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321909|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321909|2.3742400|-0.1014895	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335816|X54533|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321909|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321909|2.3742400|-0.1014895	chr17	 76851770	 76852319	-	NA	NA	NA	NA	TIMP2	NA	chr17:76841990-76921472	inner
CUST_8582_PI429285431	0.9261986	A	0.92761517	A	0.999018590396158	0	lncRNA	10139-1_{1..3000}	lnc-ZXDA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZXDA-1:1	chrX	 57620616	 57623615	-	lnc-ZXDA-1	lnc-ZXDA-1:1	ENSG00000249187	ENST00000506499	ZXDB	"hg19_refFlat_ZXDA:range=chrX:57934455-579368545'pad=0,hg19_refFlat_ZXDA:range=chrX:57934455-579368545'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30;hg19_refFlat_ZXDB:range=chrX:57618482-576208935'pad=0,hg19_refFlat_ZXDB:range=chrX:57618482-576208935'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30chrX:57618269-57623910"	NA	inner
LNCA_21_P0011749	2.433569	A	2.63956	A	0.866942971769507	0	lncRNA	TCONS_l2_00013123	NA	NA	NA	NA	XLOC_l2_007059	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007059), lincRNA [TCONS_l2_00013123]"	chr19:43724794-43719484	hs|19q13.31	Agilent_HUMAN_G3V2	TCONS_l2_00013123	TCONS_l2_00013123	chr19	 43719484	 43724794	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42657_PI429285431	0.9014052	A	0.9007995	A	1.0004199273921	0	lncRNA	45551-1_{1..126}	ENST00000362603 ncrna:snoRNA chromosome:GRCh37:7:17412825:17412950:-1 gene:ENSG00000199473 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362603 ncrna:snoRNA chromosome:GRCh37:7:17412825:17412950:-1 gene:ENSG00000199473 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 17412825	 17412950	-	ENSG00000199473	ENST00000362603	NA	NA	NA	NA	NA	inter
CUST_5377_PI429285431	2.7311172	A	3.3341274	P	0.658378806208351	0	lncRNA	5314-1_{1..384}	"transcript_id ""ENST00000565139.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565139.1"" | genecode_v17"	chr16	  1025761	  1026144	-	ENSG00000260807.2	ENST00000565139.1	RP11-161M6.2	RP11-161M6.2-007	LMF1	NA	chr16:1015761-1031318	inter
CUST_44849_PI429285431	1.1694096	A	3.8779907	P	0.152980417988661	0	lncRNA	49375-1_{1..1832}	"gi|223634003|ref|NR_026860.1| Homo sapiens long intergenic non-protein coding RNA 473 (LINC00473), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223634003|ref|NR_026860.1| Homo sapiens long intergenic non-protein coding RNA 473 (LINC00473), transcript variant 1, non-coding RNA"	Chr6	166352944	166354775	-	90632	NR_026860.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014311	0.9055054	A	2.3059273	A	0.378818344247366	0	lncRNA	XR_109241	XR_109241	XR_109241	NA	Hs.663325	LOC100507235	uncharacterized LOC100507235	NA	THC2650357	NA	"PREDICTED: Homo sapiens hypothetical LOC100507235 (LOC100507235), miscRNA [XR_109241]"	chr16:1659996-1660055	hs|16p13.3	Agilent_HUMAN_G3V2	XR_109241	XR_109241	chr16	  1659996	  1660055	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_198_PI429201921	0.90586007	A	0.9178324	A	0.991735751435192	0	lncRNA	160-1_{1..3000}	TC09001951.hg.1	TCONS_l2_00028752-XLOC_l2_014804 // Broad TUCP // linc-ANKRD20A1-20 chr9:+:45944183-45949407 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:+:45944183-45949407	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00028752-XLOC_l2_014804	linc-ANKRD20A1-20	chr9	 45944183	 45949407	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31207_PI429285431	3.1622493	A	2.1195717	A	2.06004749564286	0	lncRNA	33001-1_{1..3000}	n337653|BC030786|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|32|NULL|1.9872600|-0.3883392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337653|BC030786|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|32|NULL|1.9872600|-0.3883392	chrX	 37208545	 37211544	+	NA	NA	NA	NA	PRRG1	NA	chrX:37208528-37316548	inner
CUST_39473_PI429285431	0.89949834	A	1.1615295	A	0.833913032388056	0	lncRNA	40416-1_{1..838}	n387042|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wxn.1||0.7345070|-0.1938221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387042|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wxn.1||0.7345070|-0.1938221	chr17	   894693	   895530	+	NA	NA	NA	NA	ABR	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20chr17:906759-956816"	NA	inner
CUST_48275_PI429285431	7.916025	P	7.991767	P	0.948853985398672	0	lncRNA	52136-1_{1..2392}	hg19_lincRNAsTranscripts_TCONS_l2_00001042 range=chr1:16944753-16959154 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001042 range=chr1:16944753-16959154 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 16944753	 16947144	-	NA	NA	NA	NA	NBPF1	NA	chr1:16934753-16939982	inter
CUST_26696_PI429285431	1.4160839	A	1.6037381	A	0.878032228193256	0	lncRNA	28203-1_{1..3000}	n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	chr13	 70681309	 70684308	+	NA	NA	NA	NA	KLHL1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0,hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0 3'pad=0 strand=- repeatMasking=none,-105.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr13:70671309-70682625"	NA	inner
LNCA_21_P0008309	0.897803	A	0.89918196	A	0.999044634416464	0	lncRNA	TCONS_00022453	NA	NA	NA	NA	XLOC_010782	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010782), lincRNA [TCONS_00022453]"	chr14:29531084-29532101	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022453	TCONS_00022453	chr14	 29531084	 29532101	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19739_PI429285431	6.075742	P	6.1128626	P	0.974598157366492	0	lncRNA	21397-1_{1..2260}	lnc-C1orf86-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf86-1:2	chr1	  2113233	  2115492	-	lnc-C1orf86-1	lnc-C1orf86-1:2	ENSG00000182873.4	RP11-181G12.2	PRKCZ	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60chr1:2103233-2116834"	NA	inner
CUST_7893_PI429285431	4.178037	P	5.031392	P	0.553496078226569	0	lncRNA	9510-1_{1..897}	lnc-ANAPC10-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ANAPC10-1:3	chr4	145566859	145567755	-	lnc-ANAPC10-1	lnc-ANAPC10-1:3	ENSG00000248890	RP11-291L15.2	HHIP	NA	chr4:145567148-145577064	inter
CUST_40223_PI429285431	5.323536	P	2.5962512	A	6.62208165359715	0	lncRNA	41045-2_{3001..5283}	n408055|NR_027867|lncRNA|Homosapiens||RefGeneNoncode|NR_027867||10.4246000|-0.3394865	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408055|NR_027867|lncRNA|Homosapiens||RefGeneNoncode|NR_027867||10.4246000|-0.3394865	chr3	 33873129	 33875411	+	NA	NA	NA	NA	PDCD6IP	NA	chr3:33860129-33911195	inner
CUST_30915_PI429285431	9.147785	P	9.2622	P	0.923756809961795	0	lncRNA	32703-1_{1..482}	n336964|BC104655|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000337805|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000337805|1.0705900|-0.1873697	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336964|BC104655|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000337805|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000337805|1.0705900|-0.1873697	chr6	111279851	111280332	+	NA	NA	NA	NA	GTF3C6	NA	chr6:111269851-111289091	inner
CUST_28990_PI429285431	4.5682306	P	4.450208	P	1.08524637227012	0	lncRNA	30714-1_{1..332}	n326474|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000032873|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000032873|-1.3599300|-0.1938471	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326474|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000032873|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000032873|-1.3599300|-0.1938471	chr1	114550571	114550902	+	NA	NA	NA	NA	SYT6	NA	chr1:114544055-114616423	inter
LNCA_21_P0014588	1.3376993	A	2.0195162	A	0.623379708508	0	lncRNA	XR_110412	XR_110412	XR_110412	NA	NA	LOC100507196	uncharacterized LOC100507196	NA	THC2547866	NA	"PREDICTED: Homo sapiens hypothetical LOC100507196 (LOC100507196), miscRNA [XR_110412]"	chr10:73981780-73981839	hs|10q22.1	Agilent_HUMAN_G3V2	XR_110412	XR_110412	chr10	 73981780	 73981839	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45974_PI429285431	0.90117466	A	0.90201455	A	0.999418002041072	0	lncRNA	50266-1_{1..3000}	"gi|374532815|ref|NR_046256.1| Homo sapiens alpha-2-macroglobulin-like 1 (A2ML1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374532815|ref|NR_046256.1| Homo sapiens alpha-2-macroglobulin-like 1 (A2ML1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_046256.1	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10"	NA	Unknown
CUST_6322_PI429285431	3.2315419	P	3.089071	P	1.10379396291881	0	lncRNA	6245-1_{1..530}	"transcript_id ""ENST00000596254.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596254.1"" | genecode_v17"	chr19	  6396356	  6396885	+	ENSG00000214347.5	ENST00000596254.1	CTB-180A7.8	CTB-180A7.8-001	KHSRP	NA	chr19:6413115-6422415	inter
CUST_47920_PI429285431	3.9533098	P	4.525875	P	0.67242012078238	0	lncRNA	51811-1_{1..1804}	"gi|410172101|ref|XR_171600.1| PREDICTED: Homo sapiens uncharacterized LOC100507308 (LOC100507308), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410172101|ref|XR_171600.1| PREDICTED: Homo sapiens uncharacterized LOC100507308 (LOC100507308), misc_RNA"	NA	NA	NA	NA	NA	XR_171600.1	NA	NA	NA	"hg19_refFlat_EYA4:range=chr6:133595919-1338499435'pad=0,hg19_refFlat_EYA4:range=chr6:133595919-1338499435'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90"	NA	Unknown
CUST_15128_PI429285431	0.8847748	A	1.4376286	A	0.681670379334395	0	lncRNA	16788-1_{1..345}	lnc-SRBD1-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRBD1-4:7	chr2	 45419279	 45419623	-	lnc-SRBD1-4	lnc-SRBD1-4:7	XLOC_002078	linc-SIX2-2	NA	NA	NA	inter
CUST_9109_PI429285431	5.686237	P	6.037647	P	0.783817669007544	0	lncRNA	10630-1_{1..3000}	lnc-TBC1D22A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TBC1D22A-2:1	chr22	 47002405	 47005404	+	lnc-TBC1D22A-2	lnc-TBC1D22A-2:1	ENSG00000249879	AL021392.1	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20"	NA	inter
CUST_49969_PI429285431	0.92306966	A	1.2018092	A	0.824310890230094	0	lncRNA	53717-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026970 range=chr7:149714423-149745413 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026970 range=chr7:149714423-149745413 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	149714423	149717422	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46816_PI429285431	1.0551658	A	0.92513156	A	1.0943196728347	0	lncRNA	50957-4_{9001..9812}	"gi|383872679|ref|NR_047559.1| Homo sapiens IKAROS family zinc finger 3 (Aiolos) (IKZF3), transcript variant 14, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|383872679|ref|NR_047559.1| Homo sapiens IKAROS family zinc finger 3 (Aiolos) (IKZF3), transcript variant 14, non-coding RNA"	Chr17	 37922968	 37923779	-	22806	NR_047559.1	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.81;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.81;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.21;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20"	NA	inter
CUST_12678_PI429285431	0.9257218	A	2.114797	A	0.438583912729757	0	lncRNA	14295-1_{1..1547}	lnc-VRK1-5:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VRK1-5:7	chr14	 97933776	 97935322	+	lnc-VRK1-5	lnc-VRK1-5:7	XLOC_010922	linc-C14orf177-3	NA	NA	NA	inter
CUST_17999_PI429285431	4.734172	P	5.1503825	P	0.749390451227097	0	lncRNA	19733-1_{1..326}	lnc-ZNF609-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF609-3:2	chr15	 65010265	 65010590	+	lnc-ZNF609-3	lnc-ZNF609-3:2	XLOC_011286	linc-PLEKHO2-3	NA	NA	NA	inter
CUST_18067_PI429285431	2.6958735	A	3.3789818	P	0.6228219521314	0	lncRNA	19802-1_{1..941}	lnc-EXTL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXTL1-1:1	chr1	 26375135	 26376075	+	lnc-EXTL1-1	lnc-EXTL1-1:1	XLOC_000102	linc-PDIK1L-2	TRIM63	NA	chr1:26377798-26385590	inter
CUST_51467_PI429285431	2.6812131	A	1.1193194	A	2.95241126512684	0	lncRNA	55044-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00010127 range=chr16:33487872-33509669 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010127 range=chr16:33487872-33509669 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 33487872	 33490871	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50"	NA	inter
CUST_44485_PI429285431	2.026568	A	2.804791	A	0.583084549487451	0	lncRNA	49088-1_{1..444}	"gi|310119498|ref|XR_108581.1| PREDICTED: Homo sapiens uncharacterized LOC100506858 (LOC100506858), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119498|ref|XR_108581.1| PREDICTED: Homo sapiens uncharacterized LOC100506858 (LOC100506858), misc_RNA"	Chr5	  2303834	  2304277	-	100506858	XR_108581.1	NA	NA	NA	NA	NA	inter
CUST_40279_PI429285431	1.1096588	A	1.2527163	A	0.9055978888227	0	lncRNA	41088-1_{1..3000}	n408226|NR_028387_5|lncRNA|Homosapiens||RefGeneNoncode|NR_028387_5||0.5363300|-0.2756010	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408226|NR_028387_5|lncRNA|Homosapiens||RefGeneNoncode|NR_028387_5||0.5363300|-0.2756010	chr6	  4733174	  4736173	-	NA	NA	NA	NA	CDYL	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80chr6:4723174-4750920"	NA	inter
CUST_10636_PI429285431	0.8880841	A	0.8935253	A	0.996235550931986	0	lncRNA	12169-1_{1..1997}	lnc-SPRR2D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPRR2D-1:1	chr1	152921462	152923458	-	lnc-SPRR2D-1	lnc-SPRR2D-1:1	XLOC_001030	linc-LCE1C-2	NA	NA	NA	inter
CUST_30764_PI429285431	0.8859565	A	0.88622195	A	0.999816021007131	0	lncRNA	32549-1_{1..511}	n336602|Z32858|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326942|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326942|2.1987800|-0.3547448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336602|Z32858|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326942|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326942|2.1987800|-0.3547448	chr17	 10424443	 10424953	-	NA	NA	NA	NA	MYH1	NA	chr17:10414443-10421859	inner
CUST_22960_PI429285431	0.8866467	A	0.8894171	A	0.998081547637697	0	lncRNA	24534-3_{6001..6314}	lnc-TRIM29-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM29-2:1	chr11	120771026	120771339	-	lnc-TRIM29-2	lnc-TRIM29-2:1	ENSG00000250493.2	RP11-640N11.2	GRIK4	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80chr11:120755026-120775506"	NA	inner
LNCA_21_P0008942	1.9478103	A	1.8286287	A	1.08611856346571	0	lncRNA	XR_109301	XR_109301	XR_109301	NA	NA	LOC100505649	uncharacterized LOC100505649	NA	THC2637530	NA	"PREDICTED: Homo sapiens hypothetical LOC100505649 (LOC100505649), miscRNA [XR_109301]"	chr16:52132918-52132977	hs|16q12.1	Agilent_HUMAN_G3V2	XR_109301	XR_109301	chr16	 52132918	 52132977	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24989_PI429285431	2.213909	A	1.5465444	A	1.58816917558688	0	lncRNA	26529-1_{1..2164}	lnc-C3orf26-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-C3orf26-1:1	chr3	 99898411	 99900574	+	lnc-C3orf26-1	lnc-C3orf26-1:1	ENSG00000261533.1	RP11-15N24.4	C3orf26	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90chr3:99888411-99897476"	NA	inter
LNCA_21_P0003234	0.9020446	A	0.8977403	A	1.00298796851494	0	lncRNA	ENST00000481004	NA	NA	NA	NA	XLOC_002688	NA	ENST00000481004	THC2633322	NA	"BROAD Institute lincRNA (XLOC_002688), lincRNA [TCONS_00006874]"	chr3:65178973-65179032	hs|3p14.1	Agilent_HUMAN_G3V2	ENST00000481004	ENST00000481004	chr3	 65178973	 65179032	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014499	6.1490555	P	6.14144	P	1.00529261903841	0	lncRNA	XR_110106	XR_110106	XR_110106	NA	NA	SACS-AS1	SACS antisense RNA 1 (non-protein coding)	NA	NA	NA	"PREDICTED: Homo sapiens SACS antisense RNA 1 (non-protein coding) (SACS-AS1), miscRNA [XR_110106]"	chr13:24002926-24002985	hs|13q12.12	Agilent_HUMAN_G3V2	XR_110106	XR_110106	chr13	 24002926	 24002985	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010128	0.90351576	A	0.8990672	A	1.00308826571882	0	lncRNA	TCONS_00028722	NA	NA	NA	NA	XLOC_013827	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013827), lincRNA [TCONS_00028722]"	chr20:59044696-59044637	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028722	TCONS_00028722	chr20	 59044637	 59044696	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32522_PI429285431	0.90969	A	0.89593875	A	1.00957721092174	0	lncRNA	34188-1_{1..3000}	n339127|AK124897|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1557|NULL|4.6305200|-0.2546020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339127|AK124897|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1557|NULL|4.6305200|-0.2546020	chr2	216476285	216479284	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3412_PI429285431	8.270244	P	8.730225	P	0.726995832984235	0	lncRNA	3384-1_{1..257}	"transcript_id ""ENST00000425309.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425309.1"" | genecode_v17"	chr9	 44402460	 44402716	+	ENSG00000237357.1	ENST00000425309.1	RP11-475I24.3	RP11-475I24.3-003	NA	NA	NA	inter
CUST_41479_PI429285431	0.88803273	A	1.1239047	A	0.849171601676563	0	lncRNA	42678-1_{1..80}	ENST00000385024 ncrna:miRNA chromosome:GRCh37:7:99691391:99691470:-1 gene:ENSG00000207757 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385024 ncrna:miRNA chromosome:GRCh37:7:99691391:99691470:-1 gene:ENSG00000207757 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 99691391	 99691470	-	ENSG00000207757	ENST00000385024	NA	NA	MCM7	NA	chr7:99690404-99699427	inner
CUST_28807_PI429285431	0.9136566	A	0.9205763	A	0.995215113671694	0	lncRNA	30515-1_{1..316}	n326219|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090768|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090768|-0.3814600|-0.2654231	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326219|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090768|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090768|-0.3814600|-0.2654231	chr1	220692704	220693019	-	NA	NA	NA	NA	MARK1	NA	chr1:220701568-220704670	inter
CUST_29184_PI429285431	5.7767487	P	6.192358	P	0.74970280235657	0	lncRNA	30929-1_{1..544}	n326697|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000085369|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000085369|-1.2843800|-0.2482652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326697|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000085369|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000085369|-1.2843800|-0.2482652	chr1	 16358347	 16358890	+	NA	NA	NA	NA	CLCNKA	NA	chr1:16348486-16360545	inner
LNCA_21_P0001837	9.956968	P	9.613701	P	1.2686261626223	0	lncRNA	ENST00000423925	NA	NA	NA	NA	XLOC_001370	NA	ENST00000423925	NA	NA	"BROAD Institute lincRNA (XLOC_001370), lincRNA [TCONS_00002839]"	chr2:16946342-16948291	hs|2p24.2	Agilent_HUMAN_G3V2	ENST00000423925	ENST00000423925	chr2	 16946342	 16948291	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9521_PI429285431	0.9187767	A	1.0804092	A	0.894012866671799	0	lncRNA	11029-1_{1..743}	lnc-MME-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MME-1:1	chr3	154976047	154976789	+	lnc-MME-1	lnc-MME-1:1	XLOC_002886	linc-GMPS-3	NA	NA	NA	inter
CUST_22109_PI429285431	1.9080118	A	1.8644271	A	1.03067158281769	0	lncRNA	23714-1_{1..573}	lnc-CXXC11-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CXXC11-4:2	chr2	243020611	243021183	+	lnc-CXXC11-4	lnc-CXXC11-4:2	ENSG00000233806.2	AC131097.3	NA	NA	NA	inter
CUST_48995_PI429285431	0.9102898	A	1.7408798	A	0.562299239198885	0	lncRNA	52827-1_{1..2577}	hg19_lincRNAsTranscripts_TCONS_l2_00019712 range=chr3:197319702-197342343 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019712 range=chr3:197319702-197342343 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	197319702	197322278	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002885	0.9012124	A	1.5129311	A	0.654416622948014	0	lncRNA	ENST00000470739	NA	NA	NA	NA	XLOC_003274	NA	ENST00000470739	NA	NA	"BROAD Institute lincRNA (XLOC_003274), lincRNA [TCONS_00005841]"	chr3:147562000-147561941	hs|3q24	Agilent_HUMAN_G3V2	ENST00000470739	ENST00000470739	chr3	147561941	147562000	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44494_PI429285431	0.8926368	A	1.4591087	A	0.675266129185754	0	lncRNA	49094-2_{3001..3260}	"gi|337756461|ref|NR_039989.1| Homo sapiens uncharacterized LOC100505738 (LOC100505738), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|337756461|ref|NR_039989.1| Homo sapiens uncharacterized LOC100505738 (LOC100505738), non-coding RNA"	Chr5	  8460800	  8461059	+	100505738	NR_039989.1	NA	NA	NA	NA	NA	inter
CUST_16863_PI429285431	0.90196705	A	1.3516393	A	0.732209171618405	0	lncRNA	18569-1_{1..1404}	lnc-HDAC2-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HDAC2-2:5	chr6	113953502	113954905	-	lnc-HDAC2-2	lnc-HDAC2-2:5	XLOC_005810	linc-LAMA4-2	NA	NA	NA	inter
CUST_44566_PI429285431	7.936054	P	8.119402	P	0.880656920652671	0	lncRNA	49148-1_{1..1513}	"gi|397139104|ref|XR_108586.2| PREDICTED: Homo sapiens uncharacterized LOC728769 (LOC728769), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139104|ref|XR_108586.2| PREDICTED: Homo sapiens uncharacterized LOC728769 (LOC728769), misc_RNA"	Chr5	 77654625	 77656137	-	728769	XR_108586.3	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.11;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30"	NA	inter
CUST_8464_PI429285431	6.760702	P	7.1795435	P	0.748025055563139	0	lncRNA	10031-1_{1..571}	lnc-JAM3-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-JAM3-3:5	chr11	133909657	133910227	+	lnc-JAM3-3	lnc-JAM3-3:5	ENSG00000204241	RP11-713P17.3	NA	NA	NA	inter
CUST_14737_PI429285431	1.8677065	A	1.9359877	A	0.953773629561714	0	lncRNA	16401-1_{1..327}	lnc-DCDC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCDC1-1:1	chr11	 30880487	 30880813	-	lnc-DCDC1-1	lnc-DCDC1-1:1	XLOC_009405	linc-MPPED2-1	DCDC5	NA	chr11:30885150-30890597	inter
CUST_46897_PI429285431	2.568534	A	2.7553957	A	0.8785146806003	0	lncRNA	51018-3_{6001..6345}	"gi|387157886|ref|NR_048561.1| Homo sapiens protein phosphatase, Mg2+/Mn2+ dependent, 1E (PPM1E), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387157886|ref|NR_048561.1| Homo sapiens protein phosphatase, Mg2+/Mn2+ dependent, 1E (PPM1E), transcript variant 2, non-coding RNA"	Chr17	 56839230	 56839574	+	22843	NR_048561.1	NA	NA	NA	NA	NA	inter
CUST_21495_PI429285431	3.3382242	P	2.486455	A	1.80471271683211	0	lncRNA	23113-1_{1..594}	lnc-USP47-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP47-2:1	chr11	 11374676	 11375269	+	lnc-USP47-2	lnc-USP47-2:1	ENSG00000255351.1	RP11-567I13.1	GALNTL4	"hg19_refFlat_CSNK2A1P:range=chr11:11373491-113746665'pad=0,hg19_refFlat_CSNK2A1P:range=chr11:11373491-113746665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CSNK2A1:range=chr20:464605-4783825'pad=0,hg19_refFlat_CSNK2A1:range=chr20:464605-4783825'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CSNK2A1:range=chr20:464605-4891955'pad=0,hg19_refFlat_CSNK2A1:range=chr20:464605-4891955'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90chr11:11364676-11384854"	NA	inner
CUST_21041_PI429285431	0.8911841	A	1.0490409	A	0.89635566623086	0	lncRNA	22668-1_{1..483}	lnc-INTS12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-INTS12-1:1	chr4	106853753	106854235	-	lnc-INTS12-1	lnc-INTS12-1:1	ENSG00000250740.1	RP11-710F7.2	NPNT	"hg19_refFlat_NPNT:range=chr4:106816810-1068901475'pad=0,hg19_refFlat_NPNT:range=chr4:106816810-1068901475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50chr4:106843753-106863879"	NA	inner
CUST_39936_PI429285431	2.5011418	A	2.3238616	A	1.13075015991439	0	lncRNA	40814-1_{1..1506}	n406871|NR_024355|lncRNA|Homosapiens||RefGeneNoncode|NR_024355||1.5533500|-0.1024109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406871|NR_024355|lncRNA|Homosapiens||RefGeneNoncode|NR_024355||1.5533500|-0.1024109	chr22	 42348190	 42349695	+	NA	NA	NA	NA	CENPM	NA	chr22:42338190-42343148	inter
CUST_11_PI429201921	9.41565	P	9.976898	P	0.67771565372599	0	lncRNA	11-1_{1...	TC6_dbb_hap3000201.hg.1	TCONS_l2_00031098-XLOC_l2_016000 // Broad TUCP // linc-GNAO1-3 chr6_dbb_hap3:+:3266749-3267543 // chr6_dbb_hap3 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6_dbb_hap3:+:3266749-3267543	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031098-XLOC_l2_016000	linc-GNAO1-3	chr6_dbb_hap3	  3266749	  3267543	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49294_PI429285431	4.930707	P	6.0460787	P	0.461572219281627	0	lncRNA	53111-1_{1..997}	hg19_lincRNAsTranscripts_TCONS_l2_00022176 range=chr5:7289852-7296985 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022176 range=chr5:7289852-7296985 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	  7289852	  7290848	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12889_PI429285431	0.89485806	A	1.4079312	A	0.700728198973168	0	lncRNA	14517-1_{1..1138}	lnc-WDR65-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR65-1:1	chr1	 43611117	 43612254	+	lnc-WDR65-1	lnc-WDR65-1:1	XLOC_000162	linc-FAM183A	FAM183A	NA	chr1:43613594-43621958	inter
CUST_43350_PI429285431	1.32005	A	2.4348755	A	0.461747002218584	0	lncRNA	48170-2_{3001..6000}	"gi|383276540|ref|NR_047520.1| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|383276540|ref|NR_047520.1| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 2, non-coding RNA"	Chr1	   765971	   768970	+	643837	NR_047520.1	NA	NA	NA	NA	NA	inter
CUST_19808_PI429285431	0.9242867	A	1.2998631	A	0.770797394466906	0	lncRNA	21465-1_{1..478}	lnc-TRAF6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRAF6-1:1	chr11	 36447549	 36448026	-	lnc-TRAF6-1	lnc-TRAF6-1:1	ENSG00000255060.1	RP11-219O3.2	PRR5L	NA	chr11:36437549-36457672	inner
CUST_48188_PI429285431	1.5128406	A	1.4729114	A	1.02806337339269	0	lncRNA	52051-1_{1..978}	"gi|310118103|ref|XR_113303.1| PREDICTED: Homo sapiens chromosome X open reading frame 24 (CXorf24), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118103|ref|XR_113303.1| PREDICTED: Homo sapiens chromosome X open reading frame 24 (CXorf24), misc_RNA"	NA	NA	NA	NA	NA	XR_113303.1	NA	NA	NA	NA	NA	Unknown
CUST_7685_PI429285431	9.498556	P	9.676494	P	0.88396551877624	0	lncRNA	9319-1_{1..3000}	lnc-RP11-582J16.5.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-582J16.5.1-2:1	chr8	 22446664	 22449663	-	lnc-RP11-582J16.5.1-2	lnc-RP11-582J16.5.1-2:1	ENSG00000251263	ENST00000502542	PDLIM2	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PDLIM2:range=chr8:22436293-224514235'pad=0,hg19_refFlat_PDLIM2:range=chr8:22436293-224514235'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-59.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PDLIM2:range=chr8:22438118-224513195'pad=0,hg19_refFlat_PDLIM2:range=chr8:22438118-224513195'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.70;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PDLIM2:range=chr8:22438118-224521625'pad=0,hg19_refFlat_PDLIM2:range=chr8:22438118-224521625'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00chr8:22436664-22455538"	NA	inner
CUST_47859_PI429285431	8.255505	P	6.784239	P	2.77265093765359	0	lncRNA	51761-3_{6001..6450}	"gi|410171124|ref|XR_171157.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171124|ref|XR_171157.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	XR_171157.1	NA	NA	NA	NA	NA	Unknown
CUST_49734_PI429285431	13.893886	P	14.5037365	P	0.655264600535259	0	lncRNA	53506-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026509 range=chr7:35791484-35833619 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026509 range=chr7:35791484-35833619 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 35791484	 35794483	-	NA	NA	NA	NA	7-Sep	NA	chr7:35840627-35843619	inter
CUST_19678_PI429285431	0.91954744	A	0.93026286	A	0.992600151537555	0	lncRNA	21335-1_{1..1973}	lnc-MTBP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MTBP-1:1	chr8	121788599	121790571	+	lnc-MTBP-1	lnc-MTBP-1:1	ENSG00000248318.1	RP11-713M15.1	SNTB1	NA	chr8:121778599-121799072	inner
CUST_22217_PI429285431	6.6743493	P	6.750634	P	0.948497121195142	0	lncRNA	23817-1_{1..665}	lnc-BAHCC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BAHCC1-1:1	chr17	 79347535	 79348199	+	lnc-BAHCC1-1	lnc-BAHCC1-1:1	ENSG00000263154.1	RP11-1055B8.2	LOC100130370	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-32.20chr17:79352934-79357447"	NA	inter
LNCA_21_P0014784	1.0708234	A	2.8083494	A	0.29988348951325	0	lncRNA	XR_132566	XR_132566	XR_132566	NA	NA	LOC100289607	heat shock 10kDa protein 1 (chaperonin 10) pseudogene	NA	NA	NA	"PREDICTED: Homo sapiens 10 kDa heat shock protein, mitochondrial-like (LOC100289607), miscRNA [XR_132566]"	chr9:94790030-94790090	hs|9q22.31	Agilent_HUMAN_G3V2	XR_132566	XR_132566	chr9	 94790030	 94790090	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001641	0.9051761	A	1.9148189	A	0.4966692039038	0	lncRNA	TCONS_00001869	NA	NA	NA	NA	XLOC_001257	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001257), lincRNA [TCONS_00001869]"	chr1:231663099-231658907	hs|1q42.2	Agilent_HUMAN_G3V2	TCONS_00001869	TCONS_00001869	chr1	231658907	231663099	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3285_PI429285431	6.1590476	P	5.6251807	P	1.4478045948212	0	lncRNA	3263-1_{1..339}	"transcript_id ""ENST00000458107.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458107.3"" | genecode_v17"	chr8	122691366	122691704	+	ENSG00000248478.2	ENST00000458107.3	RP11-3G20.2	RP11-3G20.2-001	NA	NA	NA	inter
CUST_9414_PI429285431	0.8910327	A	0.8944683	A	0.997621456773935	0	lncRNA	10917-1_{1..418}	lnc-C15orf54-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf54-1:3	chr15	 39468954	 39469371	+	lnc-C15orf54-1	lnc-C15orf54-1:3	XLOC_011214	linc-C15orf54	NA	NA	NA	inter
LNCA_21_P0012696	0.9031614	A	1.8438227	A	0.520994013365064	0	lncRNA	TCONS_l2_00021410	NA	NA	NA	NA	XLOC_l2_011361	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011361), lincRNA [TCONS_l2_00021410]"	chr4:175041096-175041037	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_l2_00021410	TCONS_l2_00021410	chr4	175041037	175041096	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41598_PI429285431	1.5626022	A	0.90790087	A	1.57429000631219	0	lncRNA	42945-1_{1..70}	ENST00000582517 ncrna:miRNA chromosome:GRCh37:1:5922732:5922801:-1 gene:ENSG00000264101 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582517 ncrna:miRNA chromosome:GRCh37:1:5922732:5922801:-1 gene:ENSG00000264101 gene_biotype:miRNA transcript_biotype:miRNA	chr1	  5922732	  5922801	-	ENSG00000264101	ENST00000582517	NA	NA	NPHP4	NA	chr1:5922870-5932801	inter
CUST_41502_PI429285431	11.388183	P	10.668604	P	1.64670143229753	0	lncRNA	42721-1_{1..72}	ENST00000577272 ncrna:miRNA chromosome:GRCh37:14:74946836:74946907:-1 gene:ENSG00000265649 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577272 ncrna:miRNA chromosome:GRCh37:14:74946836:74946907:-1 gene:ENSG00000265649 gene_biotype:miRNA transcript_biotype:miRNA	chr14	 74946836	 74946907	-	ENSG00000265649	ENST00000577272	NA	NA	ISCA2	NA	chr14:74949550-74956907	inner
CUST_48858_PI429285431	0.90179044	A	0.91580665	A	0.990331744586419	0	lncRNA	52694-1_{1..737}	hg19_lincRNAsTranscripts_TCONS_l2_00019673 range=chr3:193723150-193764515 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019673 range=chr3:193723150-193764515 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	193723150	193723886	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40924_PI429285431	4.1565375	P	4.5028896	P	0.786570453804644	0	lncRNA	41609-1_{1..3000}	n410803|NR_038257|lncRNA|Homosapiens||RefGeneNoncode|NR_038257||19.4697000|-0.0852356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410803|NR_038257|lncRNA|Homosapiens||RefGeneNoncode|NR_038257||19.4697000|-0.0852356	chr21	 45773483	 45776482	+	NA	NA	NA	NA	TRPM2	NA	chr21:45773484-45862964	inner
CUST_49395_PI429285431	0.8946455	A	1.5345609	A	0.641750580093488	0	lncRNA	53206-1_{1..1008}	hg19_lincRNAsTranscripts_TCONS_l2_00022571 range=chr5:148442896-148486892 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022571 range=chr5:148442896-148486892 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	148442896	148443903	+	NA	NA	NA	NA	SH3TC2	NA	chr5:148432896-148442737	inter
CUST_9527_PI429285431	3.652221	P	4.149385	P	0.708498154342544	0	lncRNA	11035-1_{1..833}	lnc-GAP43-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GAP43-9:1	chr3	116962551	116963383	+	lnc-GAP43-9	lnc-GAP43-9:1	XLOC_002770	linc-C3orf30-6	NA	NA	NA	inter
CUST_20306_PI429285431	0.89075047	A	0.8873741	A	1.00234306203564	0	lncRNA	21949-1_{1..1340}	lnc-EIF2AK3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF2AK3-2:1	chr2	 88751415	 88752754	-	lnc-EIF2AK3-2	lnc-EIF2AK3-2:1	ENSG00000214336.3	FOXI3	FOXI3	NA	chr2:88747726-88752053	inner
CUST_48913_PI429285431	7.6052213	P	7.546223	P	1.04174220147036	0	lncRNA	52755-1_{1..563}	hg19_lincRNAsTranscripts_TCONS_l2_00018819 range=chr3:126040109-126041638 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018819 range=chr3:126040109-126041638 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	126040109	126040671	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22807_PI429285431	3.9123516	P	4.0244737	P	0.925226119811459	0	lncRNA	24387-1_{1..403}	lnc-ANKRD11-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD11-4:1	chr16	 89294866	 89295268	-	lnc-ANKRD11-4	lnc-ANKRD11-4:1	ENSG00000260659.1	RP11-46C24.6	ZNF778	"hg19_refFlat_ZNF561:range=chr19:9720876-97301325'pad=0,hg19_refFlat_ZNF561:range=chr19:9720876-97301325'pad=0 3'pad=0 strand=- repeatMasking=none,-61.00;hg19_refFlat_ZNF778:range=chr16:89287536-892949705'pad=0,hg19_refFlat_ZNF778:range=chr16:89287536-892949705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20chr16:89284866-89295965"	NA	inter
CUST_41690_PI429285431	2.0698826	A	1.6682221	A	1.32102750030561	0	lncRNA	43162-1_{1..101}	ENST00000580911 ncrna:miRNA chromosome:GRCh37:17:55080344:55080444:1 gene:ENSG00000265809 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580911 ncrna:miRNA chromosome:GRCh37:17:55080344:55080444:1 gene:ENSG00000265809 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 55080344	 55080444	+	ENSG00000265809	ENST00000580911	NA	NA	SCPEP1	NA	chr17:55070344-55084129	inner
CUST_44207_PI429285431	0.91293275	A	0.92005074	A	0.995078336571737	0	lncRNA	48861-1_{1..1361}	"gi|213417836|ref|NR_015394.1| Homo sapiens long intergenic non-protein coding RNA 636 (LINC00636), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|213417836|ref|NR_015394.1| Homo sapiens long intergenic non-protein coding RNA 636 (LINC00636), non-coding RNA"	Chr3	107602052	107603412	+	285205	NR_015394.1	NA	NA	NA	NA	NA	inter
CUST_34334_PI429285431	4.8211923	P	4.863795	P	0.97090180705707	0	lncRNA	35827-1_{1..277}	n341199|Y11180|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3665|NULL|-1.3524200|-0.4912244	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341199|Y11180|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3665|NULL|-1.3524200|-0.4912244	chr7	 19132724	 19133000	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8117_PI429285431	12.1281395	P	11.029098	P	2.14212326497477	0	lncRNA	9721-1_{1..401}	lnc-SYNCRIP-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SYNCRIP-2:6	chr6	 86388121	 86388521	-	lnc-SYNCRIP-2	lnc-SYNCRIP-2:6	ENSG00000203875	SNHG5	NA	NA	NA	inter
LNCA_21_P0008694	2.169692	A	1.7790337	A	1.31099147121994	0	lncRNA	TCONS_00023548	NA	NA	NA	NA	XLOC_011382	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011382), lincRNA [TCONS_00023548]"	chr15:99943540-99943599	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_00023548	TCONS_00023548	chr15	 99943540	 99943599	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4480_PI429285431	0.8948572	A	0.89044315	A	1.00306427162371	0	lncRNA	4429-1_{1..339}	"transcript_id ""ENST00000544711.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544711.1"" | genecode_v17"	chr12	127175025	127175363	+	ENSG00000255998.1	ENST00000544711.1	RP11-407A16.7	RP11-407A16.7-001	NA	NA	NA	inter
CUST_40134_PI429285431	0.8966086	A	0.9021076	A	0.996195638643013	0	lncRNA	40973-2_{3001..4162}	n407722|NR_027240|lncRNA|Homosapiens||RefGeneNoncode|NR_027240||1.1095100|-0.1445414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407722|NR_027240|lncRNA|Homosapiens||RefGeneNoncode|NR_027240||1.1095100|-0.1445414	chr22	 46405495	 46406656	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.41;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
CUST_47794_PI429285431	0.89800286	A	1.047389	A	0.901634022067854	0	lncRNA	51715-1_{1..1370}	"gi|32563528|ref|NR_001525.1| Homo sapiens testis-specific transcript, Y-linked 4 (non-protein coding) (TTTY4), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|32563528|ref|NR_001525.1| Homo sapiens testis-specific transcript, Y-linked 4 (non-protein coding) (TTTY4), non-coding RNA"	NA	NA	NA	NA	NA	NR_001525.1	NA	NA	NA	NA	NA	Unknown
CUST_29588_PI429285431	4.5938206	P	4.4616776	P	1.09592038874452	0	lncRNA	31348-1_{1..407}	n333095|AF306686|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076874|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076874|1.2061800|-0.2173214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333095|AF306686|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076874|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076874|1.2061800|-0.2173214	chr20	 17949688	 17950094	+	NA	NA	NA	NA	C20orf72	NA	chr20:17949762-17960755	inner
LNCA_21_P0006376	0.8911765	A	0.88879937	A	1.00164905916242	0	lncRNA	TCONS_00016745	NA	NA	NA	NA	XLOC_007640	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007640), lincRNA [TCONS_00016745]"	chr9:7344667-7344608	hs|9p24.1	Agilent_HUMAN_G3V2	TCONS_00016745	TCONS_00016745	chr9	  7344608	  7344667	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9687_PI429285431	4.8803353	P	5.80586	P	0.526489002090336	0	lncRNA	11204-1_{1..3000}	lnc-MTHFSD-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-MTHFSD-2:8	chr16	 86532030	 86535029	-	lnc-MTHFSD-2	lnc-MTHFSD-2:8	XLOC_012046	linc-COX4NB-9	NA	NA	NA	inter
CUST_19430_PI429285431	0.89241576	A	0.89558184	A	0.997807846859542	0	lncRNA	21090-1_{1..702}	lnc-KIAA1239-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1239-3:3	chr4	 37019877	 37020578	+	lnc-KIAA1239-3	lnc-KIAA1239-3:3	ENSG00000261761.1	RP11-103J17.2	NA	NA	NA	inter
CUST_17542_PI429285431	1.0741357	A	1.2937796	A	0.858777382052463	0	lncRNA	19268-1_{1..344}	lnc-HIST1H2AG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HIST1H2AG-1:1	chr6	 27026475	 27026818	+	lnc-HIST1H2AG-1	lnc-HIST1H2AG-1:1	XLOC_005217	linc-HIST1H2AG-1	NA	NA	NA	inter
LNCA_21_P0006646	0.8923506	A	1.5503639	A	0.633750418535482	0	lncRNA	ENST00000414631	NA	NA	NA	NA	XLOC_008378	NA	ENST00000414631	NA	NA	"BROAD Institute lincRNA (XLOC_008378), lincRNA [TCONS_00017781]"	chr10:7578428-7578487	hs|10p14	Agilent_HUMAN_G3V2	ENST00000414631	ENST00000414631	chr10	  7578428	  7578487	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38737_PI429285431	10.7421465	P	11.006223	P	0.832731613483711	0	lncRNA	39730-1_{1..3000}	n384248|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003cpd.1||-0.5315110|-0.2295818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384248|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003cpd.1||-0.5315110|-0.2295818	chr3	 46058515	 46061514	-	NA	NA	NA	NA	XCR1	NA	chr3:46062291-46068979	inter
CUST_52169_PI429285431	0.91134995	A	0.91391575	A	0.998223103517272	0	lncRNA	55689-1_{1..1479}	hg19_lincRNAsTranscripts_TCONS_l2_00017937 range=chr22:23804280-23829158 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017937 range=chr22:23804280-23829158 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 23804280	 23805758	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41048_PI429285431	7.7715106	P	7.873044	P	0.932041823836219	0	lncRNA	41709-1_{1..703}	n411717|NR_044997_5|lncRNA|Homosapiens||RefGeneNoncode|NR_044997_5||-0.5134850|-0.1893395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411717|NR_044997_5|lncRNA|Homosapiens||RefGeneNoncode|NR_044997_5||-0.5134850|-0.1893395	chr6	  4674616	  4675318	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38071_PI429285431	3.1970806	P	3.8686028	P	0.627843894146846	0	lncRNA	39148-1_{1..1055}	n381047|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001alh.3||-1.1431900|-0.1880743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381047|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001alh.3||-1.1431900|-0.1880743	chr1	  3816967	  3818021	+	NA	NA	NA	NA	C1orf174	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-47.42;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70chr1:3806967-3816857"	NA	inter
CUST_42928_PI429285431	0.915431	A	1.2094073	A	0.815650892405911	0	lncRNA	46038-1_{1..212}	ENST00000516027 ncrna:snoRNA chromosome:GRCh37:10:120545264:120545475:-1 gene:ENSG00000251836 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516027 ncrna:snoRNA chromosome:GRCh37:10:120545264:120545475:-1 gene:ENSG00000251836 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	120545264	120545475	-	ENSG00000251836	ENST00000516027	NA	NA	NA	NA	NA	inter
CUST_37340_PI429285431	4.810495	P	4.814512	P	0.997219500544789	0	lncRNA	38444-1_{1..539}	n345783|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1332|NULL|-1.3278400|-0.3733749	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345783|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1332|NULL|-1.3278400|-0.3733749	chrX	 16175875	 16176413	-	NA	NA	NA	NA	MAGEB17	NA	chrX:16185604-16188205	inter
CUST_5868_PI429285431	2.558177	A	2.2413208	A	1.24561325342302	0	lncRNA	5797-1_{1..587}	"transcript_id ""ENST00000591137.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591137.1"" | genecode_v17"	chr17	 42872115	 42872701	-	ENSG00000267405.1	ENST00000591137.1	CTC-296K1.4	CTC-296K1.4-001	GJC1	NA	chr17:42875816-42885151	inter
CUST_28701_PI429285431	2.6334324	A	2.5499434	A	1.05957741650056	0	lncRNA	30401-1_{1..1745}	n326090|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046511|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046511|-1.1209800|-0.2662300	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326090|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046511|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046511|-1.1209800|-0.2662300	chr10	  4687618	  4689362	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5274_PI429285431	3.5781631	P	4.0565634	P	0.717773069470797	0	lncRNA	5214-1_{1..1247}	"transcript_id ""ENST00000559535.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559535.1"" | genecode_v17"	chr15	 83379223	 83380469	-	ENSG00000228141.2	ENST00000559535.1	AC105339.1	AC105339.1-003	AP3B2	NA	chr15:83369223-83378635	inter
CUST_10735_PI429285431	5.229187	P	5.275091	P	0.968682645287948	0	lncRNA	12273-1_{1..3000}	lnc-C20orf166-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf166-3:1	chr20	 61057976	 61060975	+	lnc-C20orf166-3	lnc-C20orf166-3:1	XLOC_013601	linc-C20orf166	GATA5	NA	chr20:61047976-61051026	inter
CUST_42329_PI429285431	3.574982	P	3.6102347	P	0.975860815691216	0	lncRNA	44975-1_{1..72}	ENST00000364281 ncrna:snoRNA chromosome:GRCh37:20:33704939:33705010:-1 gene:ENSG00000201151 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364281 ncrna:snoRNA chromosome:GRCh37:20:33704939:33705010:-1 gene:ENSG00000201151 gene_biotype:snoRNA transcript_biotype:snoRNA	chr20	 33704939	 33705010	-	ENSG00000201151	ENST00000364281	NA	NA	EDEM2	NA	chr20:33703160-33715010	inner
CUST_9166_PI429285431	6.7081285	P	6.4633236	P	1.18493251810918	0	lncRNA	10684-1_{1..2191}	lnc-KIAA1919-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1919-3:1	chr6	111812171	111814361	+	lnc-KIAA1919-3	lnc-KIAA1919-3:1	ENSG00000231889	TRAF3IP2-AS1	REV3L	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80chr6:111802171-111804414"	NA	inter
CUST_40620_PI429285431	5.6581326	P	6.4181027	P	0.5905085689375	0	lncRNA	41362-2_{3001..5797}	n410098|NR_036529|lncRNA|Homosapiens||RefGeneNoncode|NR_036529||23.2247000|-0.2399239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410098|NR_036529|lncRNA|Homosapiens||RefGeneNoncode|NR_036529||23.2247000|-0.2399239	chr9	100003707	100006503	+	NA	NA	NA	NA	C9orf174	NA	chr9:100069910-100139577	inner
CUST_414_PI429285431	0.9031151	A	1.2637565	A	0.778818252077922	0	lncRNA	406-1_{1..1109}	"transcript_id ""ENST00000448844.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448844.1"" | genecode_v17"	chr1	143391568	143392676	+	ENSG00000238261.4	ENST00000448844.1	RP11-435B5.5	RP11-435B5.5-001	NA	NA	NA	inter
LNCA_21_P0002032	0.90062225	A	0.8964491	A	1.00289679478138	0	lncRNA	ENST00000426527	NA	NA	NA	NA	XLOC_002021	NA	ENST00000426527	NA	NA	"BROAD Institute lincRNA (XLOC_002021), lincRNA [TCONS_00003234]"	chr2:23580446-23580387	hs|2p24.1	Agilent_HUMAN_G3V2	ENST00000426527	ENST00000426527	chr2	 23580387	 23580446	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21045_PI429285431	2.424591	A	2.3845263	A	1.02815993512272	0	lncRNA	22672-1_{1..702}	lnc-RPS18-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS18-2:2	chr6	 33219290	 33219991	+	lnc-RPS18-2	lnc-RPS18-2:2	ENSG00000232940.1	HCG25	VPS52	"hg19_refFlat_VPS52:range=chr6_mann_hap4:4675922-46770555'pad=0,hg19_refFlat_VPS52:range=chr6_mann_hap4:4675922-46770555'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_VPS52:range=chr6_mcf_hap5:4692408-47132225'pad=0,hg19_refFlat_VPS52:range=chr6_mcf_hap5:4692408-47132225'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_VPS52:range=chr6_dbb_hap3:4499938-45207745'pad=0,hg19_refFlat_VPS52:range=chr6_dbb_hap3:4499938-45207745'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_VPS52:range=chr6:33218618-332394525'pad=0,hg19_refFlat_VPS52:range=chr6:33218618-332394525'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_VPS52:range=chr6_cox_hap2:4662444-46832625'pad=0,hg19_refFlat_VPS52:range=chr6_cox_hap2:4662444-46832625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_VPS52:range=chr6_ssto_hap7:4698843-47196545'pad=0,hg19_refFlat_VPS52:range=chr6_ssto_hap7:4698843-47196545'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_VPS52:range=chr6_qbl_hap6:4450837-44716885'pad=0,hg19_refFlat_VPS52:range=chr6_qbl_hap6:4450837-44716885'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70chr6:33218049-33229716"	NA	inner
CUST_39040_PI429285431	4.245227	P	4.3659925	P	0.919699524735558	0	lncRNA	40020-1_{1..2165}	n385460|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ysm.1||1.4980600|-0.3099061	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385460|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ysm.1||1.4980600|-0.3099061	chr8	128958804	128960968	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12161_PI429285431	3.22897	A	3.698903	P	0.721998127197412	0	lncRNA	13759-1_{1..442}	lnc-MDM1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MDM1-1:2	chr12	 68845147	 68845588	-	lnc-MDM1-1	lnc-MDM1-1:2	XLOC_010117	linc-MDM1-1	NA	NA	NA	inter
CUST_16375_PI429285431	0.9090433	A	0.91417575	A	0.996448777312669	0	lncRNA	18073-1_{1..1130}	lnc-CBLB-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLB-3:3	chr3	106146751	106147880	-	lnc-CBLB-3	lnc-CBLB-3:3	XLOC_003199	linc-CBLB-10	NA	NA	NA	inter
CUST_41119_PI429285431	0.91248	A	1.2395911	A	0.797131088186472	0	lncRNA	41881-1_{1..112}	ENST00000583721 ncrna:miRNA chromosome:GRCh37:5:143059425:143059536:1 gene:ENSG00000266478 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583721 ncrna:miRNA chromosome:GRCh37:5:143059425:143059536:1 gene:ENSG00000266478 gene_biotype:miRNA transcript_biotype:miRNA	chr5	143059425	143059536	+	ENSG00000266478	ENST00000583721	NA	NA	NA	NA	NA	inter
CUST_7833_PI429285431	0.9062056	A	0.99874806	A	0.93786848731091	0	lncRNA	9457-1_{1..1635}	lnc-SP9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SP9-1:2	chr2	175193701	175195335	+	lnc-SP9-1	lnc-SP9-1:2	ENSG00000231453	XLOC_001759	SP9	NA	chr2:175199821-175202268	inter
CUST_10642_PI429285431	0.9755301	A	0.9136571	A	1.04382003622098	0	lncRNA	12174-2_{3001..3102}	lnc-UQCRFS1-9:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UQCRFS1-9:4	chr19	 28287440	 28287541	-	lnc-UQCRFS1-9	lnc-UQCRFS1-9:4	XLOC_013282	linc-ZNF681-4	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40"	NA	inter
CUST_2822_PI429285431	0.9069614	A	1.0825577	A	0.885401486076385	0	lncRNA	2805-1_{1..524}	"transcript_id ""ENST00000414915.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414915.1"" | genecode_v17"	chr7	 46300662	 46301185	+	ENSG00000229459.1	ENST00000414915.1	AC023669.1	AC023669.1-001	NA	NA	NA	inter
LNCA_21_P0001240	2.3427768	A	2.4086404	A	0.95537325814045	0	lncRNA	ENST00000425412	NA	NA	NA	NA	XLOC_001257	NA	ENST00000425412	NA	NA	"BROAD Institute lincRNA (XLOC_001257), lincRNA [TCONS_00000760]"	chr1:231662915-231662856	hs|1q42.2	Agilent_HUMAN_G3V2	ENST00000425412	ENST00000425412	chr1	231662856	231662915	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46420_PI429285431	3.051156	P	3.3027058	P	0.839993576128225	0	lncRNA	50633-1_{1..1797}	"gi|183238677|ref|NR_022011.1| Homo sapiens paternally expressed transcript PAR-SN (PAR-SN), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|183238677|ref|NR_022011.1| Homo sapiens paternally expressed transcript PAR-SN (PAR-SN), non-coding RNA"	NA	NA	NA	NA	NA	NR_022011.1	NA	NA	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-24.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90"	NA	Unknown
CUST_25158_PI429285431	0.89601415	A	0.9136059	A	0.987880369652012	0	lncRNA	26696-1_{1..3000}	lnc-DYNLT3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DYNLT3-1:1	chrX	 36457611	 36460610	-	lnc-DYNLT3-1	lnc-DYNLT3-1:1	ENSG00000226484.1	RP11-87M18.2	NA	"hg19_refFlat_CXorf30:range=chrX:36303818-364031215'pad=0,hg19_refFlat_CXorf30:range=chrX:36303818-364031215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_42316_PI429285431	0.90312076	A	0.91217685	A	0.993742457230804	0	lncRNA	44947-1_{1..77}	ENST00000365405 ncrna:snoRNA chromosome:GRCh37:14:104263609:104263685:-1 gene:ENSG00000202275 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365405 ncrna:snoRNA chromosome:GRCh37:14:104263609:104263685:-1 gene:ENSG00000202275 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	104263609	104263685	-	ENSG00000202275	ENST00000365405	NA	NA	PPP1R13B	NA	chr14:104253609-104273685	inner
CUST_22053_PI429285431	0.9078256	A	0.8935109	A	1.00997158212311	0	lncRNA	23661-1_{1..352}	lnc-WRN-7:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-WRN-7:4	chr8	 31996731	 31997082	+	lnc-WRN-7	lnc-WRN-7:4	ENSG00000253974.1	NRG1-IT1	NRG1	NA	chr8:31986731-32006991	inner
CUST_1503_PI429285431	0.9024441	A	0.8984977	A	1.00273918075221	0	lncRNA	1490-1_{1..382}	"transcript_id ""ENST00000462300.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000462300.1"" | genecode_v17"	chr3	153094620	153095001	+	ENSG00000241912.1	ENST00000462300.1	RP11-292E2.2	RP11-292E2.2-001	NA	NA	NA	inter
CUST_34793_PI429285431	3.556458	P	3.8173258	P	0.834585754130382	0	lncRNA	36230-1_{1..1874}	n341701|BC041938|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4173|NULL|-1.2087200|-0.4588643	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341701|BC041938|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4173|NULL|-1.2087200|-0.4588643	chr9	 77109924	 77111797	-	NA	NA	NA	NA	RORB	NA	chr9:77112252-77121785	inter
CUST_23931_PI429285431	0.88645875	A	0.90199435	A	0.989289314939689	0	lncRNA	25488-1_{1..1845}	lnc-NIPAL4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NIPAL4-1:1	chr5	156995029	156996873	+	lnc-NIPAL4-1	lnc-NIPAL4-1:1	ENSG00000253519.1	AC106801.1	ADAM19	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00chr5:156985029-157002783"	NA	inner
CUST_41099_PI429285431	6.780237	P	6.926272	P	0.903730801839131	0	lncRNA	41812-1_{1..93}	ENST00000580971 ncrna:miRNA chromosome:GRCh37:1:26232853:26232945:-1 gene:ENSG00000264021 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580971 ncrna:miRNA chromosome:GRCh37:1:26232853:26232945:-1 gene:ENSG00000264021 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 26232853	 26232945	-	ENSG00000264021	ENST00000580971	NA	NA	STMN1	NA	chr1:26222853-26233368	inner
CUST_30142_PI429285431	6.2528453	P	6.56429	P	0.805834400754943	0	lncRNA	31916-1_{1..334}	n334790|AJ230635|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245070|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245070|1.7305500|-0.2428527	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334790|AJ230635|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245070|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245070|1.7305500|-0.2428527	chr14	107034727	107035060	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38184_PI429285431	0.89057374	A	1.1418133	A	0.840174229434439	0	lncRNA	39251-1_{1..1106}	n381448|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jek.2||1.3042700|-0.1937015	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n381448|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jek.2||1.3042700|-0.1937015	chr10	 47270680	 47271785	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10"	NA	inter
CUST_1147_PI429285431	4.5943575	P	4.684246	P	0.939595363891254	0	lncRNA	1136-1_{1..883}	"transcript_id ""ENST00000604340.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604340.1"" | genecode_v17"	chr2	158734195	158735077	+	ENSG00000270557.1	ENST00000604340.1	RP11-546J1.1	RP11-546J1.1-001	ACVR1	NA	chr2:158724195-158732374	inter
CUST_25831_PI429285431	4.324663	P	4.854887	P	0.692447212913882	0	lncRNA	27352-1_{1..467}	lnc-FANCL-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FANCL-3:4	chr2	 59615197	 59615663	-	lnc-FANCL-3	lnc-FANCL-3:4	ENSG00000233891.3	AC007131.2	NA	NA	NA	inter
LNCA_21_P0013188	1.04284	A	1.5792729	A	0.689473544085177	0	lncRNA	THC2724547	NA	NA	NA	NA	XLOC_l2_013328	NA	NA	THC2724547	NA	"BROAD Institute lincRNA (XLOC_l2_013328), lincRNA [TCONS_l2_00025770]"	chr7:035221914-035221855	hs|7p14.2	Agilent_HUMAN_G3V2	THC2724547	THC2724547	chr7	 35221855	 35221914	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5567_PI429285431	5.338709	P	6.096513	P	0.591395839838957	0	lncRNA	5496-1_{1..644}	"transcript_id ""ENST00000561906.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561906.1"" | genecode_v17"	chr16	 58455243	 58455886	+	ENSG00000260186.1	ENST00000561906.1	RP11-481J2.2	RP11-481J2.2-001	NDRG4	NA	chr16:58497549-58506374	inter
CUST_8156_PI429285431	3.4616842	P	3.9414756	P	0.717081299657471	0	lncRNA	9759-1_{1..2388}	lnc-ATXN7-8:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ATXN7-8:3	chr3	 64959487	 64961874	+	lnc-ATXN7-8	lnc-ATXN7-8:3	ENSG00000241684	ADAMTS9-AS2	NA	NA	NA	inter
CUST_821_PI429285431	2.523614	A	2.7923713	A	0.830034207861427	0	lncRNA	814-1_{1..418}	"transcript_id ""ENST00000416279.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416279.1"" | genecode_v17"	chr2	 32018892	 32019309	-	ENSG00000223647.1	ENST00000416279.1	AL133249.1	AL133249.1-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.72;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30"	NA	inter
CUST_33074_PI429285431	2.6195872	A	2.8404949	A	0.858025422981156	0	lncRNA	34681-1_{1..3000}	n339763|D86979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2210|NULL|11.9829000|-0.2330352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n339763|D86979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2210|NULL|11.9829000|-0.2330352	chr3	197398855	197401854	-	NA	NA	NA	NA	KIAA0226	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.09;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30chr3:197398259-197476568"	NA	inner
CUST_14645_PI429285431	0.8992698	A	1.2180936	A	0.80172323991047	0	lncRNA	16315-1_{1..210}	lnc-RABL3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RABL3-2:1	chr3	120626876	120627085	-	lnc-RABL3-2	lnc-RABL3-2:1	XLOC_003227	linc-RABL3-1	STXBP5L	NA	chr3:120627050-120636902	inter
CUST_6850_PI429285431	0.8942311	A	1.4148304	A	0.697082202910967	0	lncRNA	6798-1_{1..753}	"transcript_id ""ENST00000453716.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453716.1"" | genecode_v17"	chr21	 34430135	 34430887	+	ENSG00000232539.1	ENST00000453716.1	AP000288.2	AP000288.2-001	OLIG1	NA	chr21:34442450-34444728	inter
CUST_12202_PI429285431	4.2147164	P	4.233535	P	0.987040645513241	0	lncRNA	13801-1_{1..236}	lnc-AL591845.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL591845.1-2:1	chr1	 37238736	 37238971	+	lnc-AL591845.1-2	lnc-AL591845.1-2:1	XLOC_000144	linc-ZC3H12A-1	NA	NA	NA	inter
CUST_24730_PI429285431	0.9252769	A	0.9258492	A	0.999603390538899	0	lncRNA	26276-1_{1..597}	lnc-TIMM9-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMM9-2:6	chr14	 58764673	 58765269	-	lnc-TIMM9-2	lnc-TIMM9-2:6	ENSG00000257621.2	RP11-349A22.5	ARID4A	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70chr14:58754673-58774844"	NA	inter
LNCA_21_P0002295	1.7998356	A	3.2638369	P	0.362486381586228	0	lncRNA	TCONS_00003883	NA	NA	NA	NA	XLOC_001684	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001684), lincRNA [TCONS_00003883]"	chr2:136868533-136868592	hs|2q22.1	Agilent_HUMAN_G3V2	TCONS_00003883	TCONS_00003883	chr2	136868533	136868592	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12573_PI429285431	1.3120356	A	0.91135573	A	1.32012987537997	0	lncRNA	14181-1_{1..356}	lnc-USP12-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP12-3:3	chr13	 27782111	 27782466	-	lnc-USP12-3	lnc-USP12-3:3	XLOC_010542	linc-USP12-1	NA	NA	NA	inter
CUST_38163_PI429285431	1.1045363	A	1.1721336	A	0.954225866796244	0	lncRNA	39234-1_{1..1826}	n381408|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ipf.1||-0.1451300|-0.2723631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n381408|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ipf.1||-0.1451300|-0.2723631	chr10	 17428934	 17430759	+	NA	NA	NA	NA	ST8SIA6	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-23.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30chr10:17418934-17462630"	NA	inter
CUST_46592_PI429285431	5.853655	P	4.694982	P	2.23251984561213	0	lncRNA	50774-1_{1..2543}	"gi|210147508|ref|NR_024320.1| Homo sapiens lipopolysaccharide-induced TNF factor (LITAF), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|210147508|ref|NR_024320.1| Homo sapiens lipopolysaccharide-induced TNF factor (LITAF), transcript variant 4, non-coding RNA"	Chr16	 11641578	 11644120	-	9516	NR_024320.1	NA	NA	NA	NA	NA	inter
CUST_28209_PI429285431	4.325738	P	4.6211696	P	0.814828529940219	0	lncRNA	29838-1_{1..694}	n325492|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322405|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322405|-1.2003300|-0.4123150	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325492|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322405|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322405|-1.2003300|-0.4123150	chr2	   885901	   886594	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8920_PI429285431	0.9002596	A	0.9081412	A	0.994551786822832	0	lncRNA	10455-1_{1..639}	lnc-DLX2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DLX2-5:2	chr2	173599033	173599671	-	lnc-DLX2-5	lnc-DLX2-5:2	ENSG00000228016	AC018712.3	RAPGEF4	NA	chr2:173600525-173609097	inter
CUST_13816_PI429285431	0.914369	A	1.3211646	A	0.754296899017494	0	lncRNA	15459-1_{1..334}	lnc-SHPRH-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SHPRH-1:2	chr6	146919969	146920302	-	lnc-SHPRH-1	lnc-SHPRH-1:2	XLOC_005866	linc-SHPRH-9	C6orf103	NA	chr6:146920136-146930021	inter
CUST_47267_PI429285431	11.739746	P	11.8083105	P	0.953586356760785	0	lncRNA	51337-1_{1..2199}	"gi|311893343|ref|NR_037188.1| Homo sapiens copine I (CPNE1), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|311893343|ref|NR_037188.1| Homo sapiens copine I (CPNE1), transcript variant 8, non-coding RNA"	Chr20	 34213953	 34216151	-	8904	NR_037188.1	NA	NA	NA	NA	NA	inter
CUST_50921_PI429285431	0.89736164	A	0.90765446	A	0.992890950531782	0	lncRNA	54562-1_{1..683}	hg19_lincRNAsTranscripts_TCONS_l2_00005520 range=chr12:10902817-10930019 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005520 range=chr12:10902817-10930019 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 10902817	 10903499	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24792_PI429285431	2.158683	A	3.1367872	P	0.507646383875251	0	lncRNA	26335-1_{1..697}	lnc-WDR82-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR82-1:4	chr3	 52322596	 52323292	-	lnc-WDR82-1	lnc-WDR82-1:4	ENSG00000242797.1	GLYCTK-AS1	WDR82	NA	chr3:52312596-52312659	inter
CUST_34829_PI429285431	4.2941723	P	4.668789	P	0.771310309763358	0	lncRNA	36259-2_{3001..3475}	n341734|AL833510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4207|NULL|-1.0410200|-0.2168696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341734|AL833510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4207|NULL|-1.0410200|-0.2168696	chr9	100156117	100156591	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32452_PI429285431	3.8731577	P	4.4294367	P	0.680053899178956	0	lncRNA	34123-1_{1..1161}	n339050|BC047057|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1479|NULL|-1.2045200|-0.3937833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339050|BC047057|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1479|NULL|-1.2045200|-0.3937833	chr2	183005209	183006369	-	NA	NA	NA	NA	PDE1A	NA	chr2:183007183-183016354	inner
CUST_32164_PI429285431	0.8895168	A	0.8930167	A	0.99757699441122	0	lncRNA	33864-2_{3001..3579}	n338735|AK092250|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1155|NULL|1.2237200|-0.2187315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338735|AK092250|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1155|NULL|1.2237200|-0.2187315	chr2	 29287557	 29288135	-	NA	NA	NA	NA	FAM179A	NA	chr2:29274557-29275096	inner
LNCA_33_P3245679	0.9005546	A	0.90355533	A	0.997922214052835	0	lncRNA	XR_110372	XR_110372	XR_110372	100129940	Hs.685856	LOC100129940	uncharacterized LOC100129940	ENST00000356215	THC2703184	NA	"PREDICTED: Homo sapiens hypothetical LOC100129940 (LOC100129940), miscRNA [XR_110372]"	chr12:66249906-66249847	hs|12q14.3	Agilent_HUMAN_G3V2	XR_110372	XR_110372	chr12	 66249847	 66249906	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4914_PI429285431	1.6240463	A	0.9142017	A	1.63562792584694	0	lncRNA	4856-1_{1..559}	"transcript_id ""ENST00000554814.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554814.1"" | genecode_v17"	chr14	 82207346	 82207904	+	ENSG00000259035.1	ENST00000554814.1	RP11-666E17.1	RP11-666E17.1-001	NA	NA	NA	inter
CUST_40920_PI429285431	0.88032514	A	0.8860151	A	0.996063787541884	0	lncRNA	41606-1_{1..1648}	n410772|NR_038226|lncRNA|Homosapiens||RefGeneNoncode|NR_038226||-0.4127630|-0.2259295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n410772|NR_038226|lncRNA|Homosapiens||RefGeneNoncode|NR_038226||-0.4127630|-0.2259295	chr10	 77056140	 77057787	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009155	5.54714	P	6.2710695	P	0.605446127513371	0	lncRNA	XR_109412	XR_109412	XR_109412	NA	Hs.710026	FLJ44342	uncharacterized LOC645460	NA	THC2537595	NA	"PREDICTED: Homo sapiens hypothetical LOC645460 (FLJ44342), miscRNA [XR_109412]"	chr17:56066601-56066542	hs|17q22	Agilent_HUMAN_G3V2	XR_109412	XR_109412	chr17	 56066542	 56066601	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6381_PI429285431	3.4216492	P	1.2731649	A	4.43361746795612	0	lncRNA	6307-1_{1..2546}	"transcript_id ""ENST00000586885.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586885.1"" | genecode_v17"	chr19	 19884687	 19887232	-	ENSG00000266904.1	ENST00000586885.1	LINC00663	LINC00663-002	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70"	NA	inter
LNCA_21_P0004955	2.5175586	A	3.2340426	P	0.608578807093	0	lncRNA	TCONS_00011987	NA	NA	NA	NA	XLOC_005502	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005502), lincRNA [TCONS_00011987]"	chr6:150591009-150591068	hs|6q25.1	Agilent_HUMAN_G3V2	TCONS_00011987	TCONS_00011987	chr6	150591009	150591068	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31074_PI429285431	8.333799	P	8.274066	P	1.04227284924459	0	lncRNA	32865-1_{1..235}	n337313|DQ173771|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391756|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391756|1.0375000|-0.0858166	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337313|DQ173771|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391756|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391756|1.0375000|-0.0858166	chr5	138287509	138287743	-	NA	NA	NA	NA	SIL1	NA	chr5:138282409-138388359	inner
CUST_21412_PI429285431	8.1671095	P	7.832545	P	1.26099669985089	0	lncRNA	23032-2_{3001..3804}	lnc-AGAP5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AGAP5-1:3	chr10	 75493197	 75494000	-	lnc-AGAP5-1	lnc-AGAP5-1:3	ENSG00000242288.4	RP11-464F9.1	NA	NA	NA	inter
CUST_5058_PI429285431	1.2464936	A	0.90478575	A	1.26725587299804	0	lncRNA	4998-1_{1..582}	"transcript_id ""ENST00000555967.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555967.1"" | genecode_v17"	chr14	104320703	104321284	-	ENSG00000258534.1	ENST00000555967.1	CTD-2134A5.4	CTD-2134A5.4-001	PPP1R13B	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr14:104310703-104313927"	NA	inter
CUST_8298_PI429285431	2.9275336	A	3.5376806	P	0.65512994561147	0	lncRNA	9883-1_{1..581}	lnc-AC009336.1-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC009336.1-2:7	chr2	177042743	177043323	-	lnc-AC009336.1-2	lnc-AC009336.1-2:7	ENSG00000224189	AC009336.23	HOXD3	NA	chr2:177032743-177037826	inter
CUST_3186_PI429285431	0.9109138	A	0.91154385	A	0.999563377966043	0	lncRNA	3166-1_{1..833}	"transcript_id ""ENST00000522183.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522183.1"" | genecode_v17"	chr8	 76135938	 76136770	-	ENSG00000249395.2	ENST00000522183.1	RP11-697M17.1	RP11-697M17.1-003	NA	NA	NA	inter
LNCA_21_P0009693	0.89217633	A	0.8914163	A	1.0005269514418	0	lncRNA	TCONS_00026953	NA	NA	NA	NA	XLOC_013011	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013011), lincRNA [TCONS_00026953]"	chr19:22467742-22467801	hs|19p12	Agilent_HUMAN_G3V2	TCONS_00026953	TCONS_00026953	chr19	 22467742	 22467801	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14401_PI429285431	1.0871263	A	0.8853848	A	1.15008580418541	0	lncRNA	16062-1_{1..2172}	lnc-TRPM1-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRPM1-1:14	chr15	 31515674	 31517845	-	lnc-TRPM1-1	lnc-TRPM1-1:14	XLOC_011413	linc-TRPM1	LOC283710	NA	chr15:31514970-31523050	inner
CUST_50533_PI429285431	3.0121894	P	2.3032236	A	1.63463190653226	0	lncRNA	54227-2_{3001..3458}	hg19_lincRNAsTranscripts_TCONS_l2_00030390 range=chrX:149113093-149129134 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030390 range=chrX:149113093-149129134 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	149116093	149116550	+	NA	NA	NA	NA	CXorf40B	NA	chrX:149103093-149106716	inter
LNCA_21_P0005165	0.8913965	A	0.89004225	A	1.00093913528091	0	lncRNA	THC2616258	NA	NA	NA	NA	XLOC_005730	NA	NA	THC2616258	NA	"BROAD Institute lincRNA (XLOC_005730), lincRNA [TCONS_00012723]"	NA	NA	Agilent_HUMAN_G3V2	THC2616258	THC2616258	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010321	6.4275546	P	6.697642	P	0.829269306276105	0	lncRNA	THC2661040	NA	NA	NA	NA	XLOC_014063	NA	NA	THC2661040	NA	"BROAD Institute lincRNA (XLOC_014063), lincRNA [TCONS_00029279]"	chr21:035339619-035339560	hs|21q22.11	Agilent_HUMAN_G3V2	THC2661040	THC2661040	chr21	 35339560	 35339619	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010208	0.89104867	A	0.8891322	A	1.00132927848562	0	lncRNA	ENST00000420273	NA	NA	NA	NA	XLOC_014096	NA	ENST00000420273	THC2616473	NA	"BROAD Institute lincRNA (XLOC_014096), lincRNA [TCONS_00028941]"	chr21:44201247-44201188	hs|21q22.3	Agilent_HUMAN_G3V2	ENST00000420273	ENST00000420273	chr21	 44201188	 44201247	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6253_PI429285431	1.9313005	A	1.0778021	A	1.80687712449588	0	lncRNA	6178-1_{1..493}	"transcript_id ""ENST00000581541.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581541.1"" | genecode_v17"	chr18	 71581640	 71582132	-	ENSG00000263655.1	ENST00000581541.1	RP11-25L3.3	RP11-25L3.3-001	NA	NA	NA	inter
CUST_6771_PI429285431	4.436098	P	4.9525404	P	0.699093632614023	0	lncRNA	6718-1_{1..189}	"transcript_id ""ENST00000602505.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602505.1"" | genecode_v17"	chr21	 17566885	 17567073	+	ENSG00000215386.6	ENST00000602505.1	LINC00478	LINC00478-013	NA	NA	NA	inter
CUST_10544_PI429285431	2.195365	A	2.4676137	A	0.828027908856817	0	lncRNA	12072-1_{1..1005}	lnc-C10orf136-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-C10orf136-1:8	chr10	 44409207	 44410211	+	lnc-C10orf136-1	lnc-C10orf136-1:8	XLOC_008473	linc-TMEM72-2	NA	NA	NA	inter
CUST_19827_PI429285431	1.346869	A	1.7237471	A	0.770102240999762	0	lncRNA	21484-1_{1..729}	lnc-GATM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GATM-1:1	chr15	 45733979	 45734707	-	lnc-GATM-1	lnc-GATM-1:1	ENSG00000259342.1	RP11-519G16.5	C15orf48	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80chr15:45723979-45725647"	NA	inter
CUST_50902_PI429285431	6.1416593	P	5.910118	P	1.17408861436623	0	lncRNA	54544-1_{1..524}	hg19_lincRNAsTranscripts_TCONS_l2_00006070 range=chr12:5347285-5353360 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006070 range=chr12:5347285-5353360 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  5347285	  5347808	-	NA	NA	NA	NA	LOC100507271	NA	chr12:5343813-5347432	inter
CUST_39749_PI429285431	0.884522	A	0.8977677	A	0.990860799094572	0	lncRNA	40671-1_{1..1064}	n405887|NR_003129_3|lncRNA|Homosapiens||RefGeneNoncode|NR_003129_3||-1.2774400|-0.3692334	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405887|NR_003129_3|lncRNA|Homosapiens||RefGeneNoncode|NR_003129_3||-1.2774400|-0.3692334	chr6	  3460972	  3462035	+	NA	NA	NA	NA	SLC22A23	NA	chr6:3450972-3456793	inter
LNCA_21_P0014318	1.2954365	A	1.1205287	A	1.12889225706241	0	lncRNA	XR_109257	XR_109257	XR_109257	NA	Hs.715837	LOC100505672	uncharacterized LOC100505672	NA	THC2503922	NA	"PREDICTED: Homo sapiens hypothetical LOC100505672 (LOC100505672), miscRNA [XR_109257]"	chr16:14024599-14024540	hs|16p13.12	Agilent_HUMAN_G3V2	XR_109257	XR_109257	chr16	 14024540	 14024599	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41388_PI429285431	0.90473294	A	0.88962126	A	1.01052966924504	0	lncRNA	42492-1_{1..84}	ENST00000577577 ncrna:miRNA chromosome:GRCh37:8:103137660:103137743:1 gene:ENSG00000266756 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577577 ncrna:miRNA chromosome:GRCh37:8:103137660:103137743:1 gene:ENSG00000266756 gene_biotype:miRNA transcript_biotype:miRNA	chr8	103137660	103137743	+	ENSG00000266756	ENST00000577577	NA	NA	NCALD	NA	chr8:103127660-103137135	inter
CUST_24021_PI429285431	0.8985751	A	0.9288082	A	0.979262062878866	0	lncRNA	25574-1_{1..547}	lnc-RP11-324D17.1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-324D17.1.1-4:1	chr16	 54015562	 54016108	-	lnc-RP11-324D17.1.1-4	lnc-RP11-324D17.1.1-4:1	ENSG00000261630.1	RP11-357N13.3	FTO	"hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10chr16:54005562-54025824"	NA	inner
LNCA_21_P0008655	0.892517	A	1.4100351	A	0.698572569803909	0	lncRNA	TCONS_00023462	NA	NA	NA	NA	XLOC_011307	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011307), lincRNA [TCONS_00023462]"	chr15:74267685-74268282	hs|15q24.1	Agilent_HUMAN_G3V2	TCONS_00023462	TCONS_00023462	chr15	 74267685	 74268282	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18239_PI429285431	8.340728	P	8.288659	P	1.03675068467016	0	lncRNA	19973-1_{1..553}	lnc-GTF2F2-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2F2-2:12	chr13	 45944094	 45944646	+	lnc-GTF2F2-2	lnc-GTF2F2-2:12	ENSG00000170919	XXyac-R12DG2.2	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00"	NA	inter
CUST_37369_PI429285431	4.7813144	P	4.4288645	P	1.27672685008698	0	lncRNA	38474-1_{1..485}	n345819|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1368|NULL|-1.1189800|-0.1234535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345819|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1368|NULL|-1.1189800|-0.1234535	chr16	 15223895	 15224379	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40984_PI429285431	2.914357	A	3.6954544	P	0.581923978711645	0	lncRNA	41653-1_{1..1280}	n411119|NR_038943|lncRNA|Homosapiens||RefGeneNoncode|NR_038943||-0.7344550|-0.2528906	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411119|NR_038943|lncRNA|Homosapiens||RefGeneNoncode|NR_038943||-0.7344550|-0.2528906	chr10	111705316	111706595	-	NA	NA	NA	NA	ADD3	NA	chr10:111765726-111778139	inner
CUST_50352_PI429285431	8.921481	P	8.892072	P	1.02059395376444	0	lncRNA	54066-1_{1..1561}	hg19_lincRNAsTranscripts_TCONS_l2_00029135 range=chr9:139441309-139444183 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029135 range=chr9:139441309-139444183 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	139441309	139442869	+	NA	NA	NA	NA	NOTCH1	NA	chr9:139431309-139440238	inter
CUST_27082_PI429285431	4.3135986	P	4.318962	P	0.996289276226355	0	lncRNA	28614-1_{1..461}	n324192|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141830|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141830|-1.3080900|-0.3559497	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324192|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141830|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141830|-1.3080900|-0.3559497	chr7	126777122	126777582	-	NA	NA	NA	NA	GRM8	NA	chr7:126767122-126787583	inter
LNCA_21_P0001831	4.5178094	P	4.7825274	P	0.832361418420966	0	lncRNA	ENST00000426539	NA	NA	NA	NA	XLOC_001365	NA	ENST00000426539	NA	NA	"BROAD Institute lincRNA (XLOC_001365), lincRNA [TCONS_00002831]"	chr2:16225856-16225915	hs|2p24.3	Agilent_HUMAN_G3V2	ENST00000426539	ENST00000426539	chr2	 16225856	 16225915	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49915_PI429285431	1.9170016	A	1.5084431	A	1.32735889190691	0	lncRNA	53665-1_{1..1215}	hg19_lincRNAsTranscripts_TCONS_l2_00026771 range=chr7:97595436-97599682 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026771 range=chr7:97595436-97599682 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 97595436	 97596650	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7624_PI429285431	3.6680665	P	4.3034444	P	0.643772162781475	0	lncRNA	9256-1_{1..553}	lnc-FAM20C-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM20C-3:7	chr7	   153412	   153964	+	lnc-FAM20C-3	lnc-FAM20C-3:7	ENSG00000240859	XLOC_005953	NA	NA	NA	inter
CUST_28437_PI429285431	0.9112679	A	0.90985906	A	1.00097701043792	0	lncRNA	30096-1_{1..511}	n325761|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044565|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044565|-1.1852900|-0.2983349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325761|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044565|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044565|-1.1852900|-0.2983349	chr13	 36953603	 36954113	-	NA	NA	NA	NA	C13orf43	NA	chr13:36943603-36943872	inter
CUST_25963_PI429285431	1.6569521	A	1.5020031	A	1.11338225890655	0	lncRNA	27483-1_{1..359}	lnc-RP11-766F14.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-766F14.2.1-1:1	chr4	100547039	100547397	-	lnc-RP11-766F14.2.1-1	lnc-RP11-766F14.2.1-1:1	ENSG00000248676.1	RP11-766F14.1	MTTP	"hg19_refFlat_MTTP:range=chr4:100496067-1005440055'pad=0,hg19_refFlat_MTTP:range=chr4:100496067-1005440055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40chr4:100537039-100545154"	NA	inter
CUST_5699_PI429285431	8.512003	P	8.543264	P	0.97856460087702	0	lncRNA	5623-1_{1..535}	"transcript_id ""ENST00000570416.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000570416.1"" | genecode_v17"	chr17	  1615386	  1615920	-	ENSG00000186594.6	ENST00000570416.1	MIR22HG	MIR22HG-012	WDR81	NA	chr17:1619817-1629491	inter
CUST_6503_PI429285431	1.3141453	A	0.88674897	A	1.34480438137751	0	lncRNA	6445-1_{1..1360}	"transcript_id ""ENST00000588040.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000588040.1"" | genecode_v17"	chr19	 38219487	 38220846	-	ENSG00000267152.1	ENST00000588040.1	CTD-2528L19.6	CTD-2528L19.6-001	ZNF607	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70chr19:38209487-38210691"	NA	inter
CUST_11165_PI429285431	2.7760184	A	2.707386	A	1.04872207819558	0	lncRNA	12722-1_{1..367}	lnc-KRBA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KRBA1-1:1	chr7	149294548	149294914	+	lnc-KRBA1-1	lnc-KRBA1-1:1	XLOC_006288	linc-KRBA1-1	NA	NA	NA	inter
CUST_48846_PI429285431	3.9999056	P	4.681433	P	0.623504812240014	0	lncRNA	52682-1_{1..890}	hg19_lincRNAsTranscripts_TCONS_l2_00019485 range=chr3:125566619-125604940 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019485 range=chr3:125566619-125604940 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	125566619	125567508	-	NA	NA	NA	NA	NA	"hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-10.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
LNCA_21_P0005128	0.90350264	A	1.526681	A	0.649239031156295	0	lncRNA	TCONS_00012569	NA	NA	NA	NA	XLOC_005426	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005426), lincRNA [TCONS_00012569]"	chr6:111616969-111619807	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00012569	TCONS_00012569	chr6	111616969	111619807	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34672_PI429285431	0.89424056	A	0.8988299	A	0.996823966218249	0	lncRNA	36124-1_{1..789}	n341576|AL512742|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4047|NULL|-1.0539400|-0.3199474	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341576|AL512742|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4047|NULL|-1.0539400|-0.3199474	chr8	104395305	104396093	-	NA	NA	NA	NA	CTHRC1	NA	chr8:104385305-104395217	inter
LNCA_21_P0013750	1.752127	A	2.8359706	A	0.471770266449959	0	lncRNA	TCONS_l2_00030124	NA	NA	NA	NA	XLOC_l2_015441	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015441), lincRNA [TCONS_l2_00030124]"	chrX:2544685-2544744	hs|Xp22.33	Agilent_HUMAN_G3V2	TCONS_l2_00030124	TCONS_l2_00030124	chrX	  2544685	  2544744	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39253_PI429285431	4.113804	P	4.1860847	P	0.951133199752024	0	lncRNA	40224-1_{1..1452}	n386125|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bmc.2||0.3366470|-0.1534327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386125|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bmc.2||0.3366470|-0.1534327	chr15	 82944821	 82946272	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13999_PI429285431	6.83978	P	7.1899934	P	0.784468052676233	0	lncRNA	15645-1_{1..882}	lnc-PLEKHG6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLEKHG6-3:1	chr12	  6391293	  6392174	+	lnc-PLEKHG6-3	lnc-PLEKHG6-3:1	XLOC_009632	linc-PLEKHG6-2	PLEKHG6	NA	chr12:6381293-6401856	inter
CUST_51664_PI429285431	4.6270943	P	3.928612	P	1.62279672935679	0	lncRNA	55233-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00010936 range=chr17:66098133-66132705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010936 range=chr17:66098133-66132705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 66098133	 66101132	+	NA	NA	NA	NA	NA	"hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0,hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0,hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0,hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0,hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0,hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SH3GL1:range=chr19:4361597-44003655'pad=0,hg19_refFlat_SH3GL1:range=chr19:4361597-44003655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0,hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50"	NA	inter
CUST_4642_PI429285431	0.8844184	A	1.0554044	A	0.888235415290816	0	lncRNA	4588-1_{1..821}	"transcript_id ""ENST00000431686.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431686.1"" | genecode_v17"	chr13	 69885465	 69886285	+	ENSG00000235221.1	ENST00000431686.1	RP11-459J23.1	RP11-459J23.1-001	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70"	NA	inter
CUST_15932_PI429285431	1.0554044	A	0.9472174	A	1.07787284827573	0	lncRNA	17629-1_{1..659}	lnc-JAG1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JAG1-5:1	chr20	 11858906	 11859564	-	lnc-JAG1-5	lnc-JAG1-5:1	XLOC_013652	linc-JAG1-2	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_15473_PI429285431	1.671576	A	1.0087492	A	1.58318165448079	0	lncRNA	17161-1_{1..743}	lnc-AC110373.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC110373.1-1:1	chr4	120328954	120329696	+	lnc-AC110373.1-1	lnc-AC110373.1-1:1	XLOC_003668	linc-EXOSC9-6	NA	NA	NA	inter
LNCA_21_P0010468	0.9033017	A	1.0457754	A	0.90596442160767	0	lncRNA	TCONS_00029839	NA	NA	NA	NA	XLOC_014279	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014279), lincRNA [TCONS_00029839]"	chr22:48864281-48864340	hs|22q13.32	Agilent_HUMAN_G3V2	TCONS_00029839	TCONS_00029839	chr22	 48864281	 48864340	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24349_PI429285431	0.90069205	A	1.5300348	A	0.646470861609885	0	lncRNA	25901-1_{1..287}	lnc-RXRG-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RXRG-1:5	chr1	165498020	165498306	-	lnc-RXRG-1	lnc-RXRG-1:5	ENSG00000237463.1	RP11-280O1.2	NA	NA	NA	inter
CUST_2475_PI429285431	0.9056951	A	0.9014789	A	1.00292672165432	0	lncRNA	2467-1_{1..517}	"transcript_id ""ENST00000423568.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423568.1"" | genecode_v17"	chr6	  6993424	  6993940	+	ENSG00000203498.2	ENST00000423568.1	RP11-556O15.1	RP11-556O15.1-001	NA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40"	NA	inter
CUST_36961_PI429285431	0.9005917	A	0.91362405	A	0.991007341348829	0	lncRNA	38108-1_{1..3000}	n345424|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_973|NULL|-1.6790900|-0.2753956	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345424|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_973|NULL|-1.6790900|-0.2753956	chr1	224623282	224626281	+	NA	NA	NA	NA	WDR26	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70chr1:224613282-224622001"	NA	inter
CUST_48806_PI429285431	7.1572547	P	7.0519185	P	1.07574504866152	0	lncRNA	52644-1_{1..1530}	hg19_lincRNAsTranscripts_TCONS_l2_00014325 range=chr2:241885384-241904938 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014325 range=chr2:241885384-241904938 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	241885384	241886913	+	NA	NA	NA	NA	LOC728763	NA	chr2:241875384-241908771	inter
CUST_46340_PI429285431	5.6757083	P	4.71983	P	1.93976018334861	0	lncRNA	50565-2_{3001..4755}	"gi|332078498|ref|NR_038167.1| Homo sapiens fucosyltransferase 8 (alpha (1,6) fucosyltransferase) (FUT8), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|332078498|ref|NR_038167.1| Homo sapiens fucosyltransferase 8 (alpha (1,6) fucosyltransferase) (FUT8), transcript variant 5, non-coding RNA"	Chr14	 65880310	 65882064	+	2530	NR_038167.1	NA	NA	NA	NA	NA	inter
CUST_9229_PI429285431	4.5746074	P	4.9566426	P	0.767354325262094	0	lncRNA	10739-1_{1..948}	lnc-NPAS4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-NPAS4-1:2	chr11	 66184264	 66185211	+	lnc-NPAS4-1	lnc-NPAS4-1:2	ENSG00000254510	RP11-867G23.10	NPAS4	NA	chr11:66188475-66194177	inter
CUST_42573_PI429285431	1.5271268	A	1.4389005	A	1.06306241240797	0	lncRNA	45407-1_{1..127}	ENST00000384004 ncrna:snoRNA chromosome:GRCh37:2:27864910:27865036:-1 gene:ENSG00000206731 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384004 ncrna:snoRNA chromosome:GRCh37:2:27864910:27865036:-1 gene:ENSG00000206731 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 27864910	 27865036	-	ENSG00000206731	ENST00000384004	NA	NA	GPN1	NA	chr2:27854910-27873713	inter
CUST_48533_PI429285431	0.89366627	A	0.9021776	A	0.994117764101145	0	lncRNA	52383-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00013840 range=chr2:98287859-98319937 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013840 range=chr2:98287859-98319937 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 98287859	 98290858	+	NA	NA	NA	NA	ACTR1B	NA	chr2:98277859-98280561	inter
CUST_27941_PI429285431	1.4747553	A	1.7595778	A	0.820842593837598	0	lncRNA	29542-1_{1..577}	n325185|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330679|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330679|-1.0268800|-0.3320542	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325185|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330679|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330679|-1.0268800|-0.3320542	chr2	107737032	107737608	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005739	5.825163	P	5.709002	P	1.08384691383064	0	lncRNA	TCONS_00014805	NA	NA	NA	NA	XLOC_006881	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006881), lincRNA [TCONS_00014805]"	chr8:100014599-100014658	hs|8q22.2	Agilent_HUMAN_G3V2	TCONS_00014805	TCONS_00014805	chr8	100014599	100014658	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35073_PI429285431	1.8205	A	2.2045898	A	0.766262282917281	0	lncRNA	36483-1_{1..866}	n342027|BC035415|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4508|NULL|-0.9234990|-0.2487722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342027|BC035415|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4508|NULL|-0.9234990|-0.2487722	chr12	115800816	115801681	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005665	0.9123118	A	0.92266715	A	0.992847917095105	0	lncRNA	TCONS_00014637	NA	NA	NA	NA	XLOC_006730	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006730), lincRNA [TCONS_00014637]"	chr8:19002579-19002638	hs|8p21.3	Agilent_HUMAN_G3V2	TCONS_00014637	TCONS_00014637	chr8	 19002579	 19002638	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1957_PI429285431	3.9613543	P	3.8870893	P	1.05282452397233	0	lncRNA	1950-1_{1..812}	"transcript_id ""ENST00000507296.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507296.1"" | genecode_v17"	chr4	158558839	158559650	+	ENSG00000249275.1	ENST00000507296.1	RP11-364P22.2	RP11-364P22.2-001	NA	"hg19_refFlat_MAST2:range=chr1:46269568-465017385'pad=0,hg19_refFlat_MAST2:range=chr1:46269568-465017385'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.90"	NA	inter
CUST_1566_PI429285431	0.90704006	A	0.92122155	A	0.990218295346987	0	lncRNA	1554-1_{1..519}	"transcript_id ""ENST00000446548.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446548.1"" | genecode_v17"	chr3	177394498	177395016	+	ENSG00000228221.1	ENST00000446548.1	LINC00578	LINC00578-004	NA	NA	NA	inter
LNCA_21_P0012964	6.3027873	P	6.7195992	P	0.749078126389211	0	lncRNA	ENST00000504512	NA	NA	NA	NA	XLOC_l2_011854	NA	ENST00000504512	THC2624925	NA	"BROAD Institute lincRNA (XLOC_l2_011854), lincRNA [TCONS_l2_00023589]"	chr5:173953290-173953349	hs|5q35.2	Agilent_HUMAN_G3V2	ENST00000504512	ENST00000504512	chr5	173953290	173953349	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6819_PI429285431	0.89838606	A	1.1094422	A	0.863904569383439	0	lncRNA	6767-1_{1..441}	"transcript_id ""ENST00000441666.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441666.1"" | genecode_v17"	chr21	 26310745	 26311185	-	ENSG00000230379.1	ENST00000441666.1	AP000146.2	AP000146.2-002	NA	NA	NA	inter
CUST_48097_PI429285431	3.016539	A	3.0038915	A	1.00880511795556	0	lncRNA	51972-1_{1..3000}	"gi|397138424|ref|XR_159489.1| PREDICTED: Homo sapiens uncharacterized LOC100996798 (LOC100996798), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138424|ref|XR_159489.1| PREDICTED: Homo sapiens uncharacterized LOC100996798 (LOC100996798), misc_RNA"	NA	NA	NA	NA	NA	XR_159489.1	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30"	NA	Unknown
CUST_29079_PI429285431	1.2913538	A	1.391445	A	0.932974011699137	0	lncRNA	30810-1_{1..518}	n326572|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026633|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026633|-1.1990300|-0.3001786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326572|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026633|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026633|-1.1990300|-0.3001786	chr1	 71489269	 71489786	+	NA	NA	NA	NA	PTGER3	NA	chr1:71479269-71500390	inner
CUST_2462_PI429285431	3.5067616	P	4.1051197	P	0.660505234509365	0	lncRNA	2454-1_{1..834}	"transcript_id ""ENST00000440848.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440848.1"" | genecode_v17"	chr6	  2637170	  2638003	+	ENSG00000228718.1	ENST00000440848.1	RP11-145H9.3	RP11-145H9.3-001	C6orf195	NA	chr6:2627170-2635298	inter
CUST_9885_PI429285431	1.1728123	A	0.9668138	A	1.1534844057577	0	lncRNA	11409-1_{1..501}	lnc-RP11-44L9.1.1-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-44L9.1.1-9:1	chr16	 73849487	 73849987	+	lnc-RP11-44L9.1.1-9	lnc-RP11-44L9.1.1-9:1	XLOC_011787	linc-PSMD7-3	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20"	NA	inter
CUST_37477_PI429285431	2.8548665	A	2.4805245	A	1.29624821286599	0	lncRNA	38579-1_{1..3000}	n345937|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1486|NULL|-1.3000400|-0.2079454	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345937|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1486|NULL|-1.3000400|-0.2079454	chr16	 50539773	 50542772	+	NA	NA	NA	NA	NKD1	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70chr16:50582241-50590961"	NA	inter
CUST_29706_PI429285431	0.8895439	A	0.8953708	A	0.99596924607758	0	lncRNA	31468-1_{1..575}	n333372|BC002789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086165_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086165_08|-0.8899530|-0.2231673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333372|BC002789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086165_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086165_08|-0.8899530|-0.2231673	chr6	  1986913	  1987487	-	NA	NA	NA	NA	GMDS	NA	chr6:1976913-1998849	inner
CUST_41621_PI429285431	3.2408307	A	3.2071936	A	1.02358939118177	0	lncRNA	42995-1_{1..97}	ENST00000385208 ncrna:miRNA chromosome:GRCh37:17:64783190:64783286:1 gene:ENSG00000207943 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385208 ncrna:miRNA chromosome:GRCh37:17:64783190:64783286:1 gene:ENSG00000207943 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 64783190	 64783286	+	ENSG00000207943	ENST00000385208	NA	NA	PRKCA	NA	chr17:64773190-64793286	inner
CUST_27808_PI429285431	0.89904267	A	1.1123203	A	0.862575335907796	0	lncRNA	29394-1_{1..659}	n325036|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078294|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078294|-1.0330600|-0.3697732	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325036|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078294|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078294|-1.0330600|-0.3697732	chr20	 22516159	 22516817	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9625_PI429285431	1.3395423	A	1.5325996	A	0.874750021477583	0	lncRNA	11142-1_{1..493}	lnc-TTC9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC9-1:1	chr14	 71166712	 71167204	+	lnc-TTC9-1	lnc-TTC9-1:1	XLOC_010866	linc-PCNX	NA	NA	NA	inter
CUST_18069_PI429285431	6.527797	P	6.51604	P	1.00818262758875	0	lncRNA	19804-1_{1..481}	lnc-TMEM88B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM88B-4:1	chr1	  1317769	  1318249	+	lnc-TMEM88B-4	lnc-TMEM88B-4:1	XLOC_000017	linc-TMEM88B-1	AURKAIP1	NA	chr1:1309110-1310818	inter
LNCA_21_P0008448	1.0991982	A	0.9063877	A	1.14298819246486	0	lncRNA	TCONS_00022769	NA	NA	NA	NA	XLOC_011052	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011052), lincRNA [TCONS_00022769]"	chr14:65170570-65170511	hs|14q23.3	Agilent_HUMAN_G3V2	TCONS_00022769	TCONS_00022769	chr14	 65170511	 65170570	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009949	2.6800857	A	4.1202826	P	0.368517005439001	0	lncRNA	XR_109653	XR_109653	XR_109653	NA	Hs.120058	LOC100505664	uncharacterized LOC100505664	ENST00000411595	THC2607717	NA	"PREDICTED: Homo sapiens hypothetical LOC100505664 (LOC100505664), miscRNA [XR_109653]"	chr20:23170845-23170904	hs|20p11.21	Agilent_HUMAN_G3V2	XR_109653	XR_109653	chr20	 23170845	 23170904	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29162_PI429285431	1.2219986	A	0.8945303	A	1.25480945060366	0	lncRNA	30905-1_{1..1850}	n326673|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000008408|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000008408|-0.4408140|-0.2432190	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326673|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000008408|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000008408|-0.4408140|-0.2432190	chr1	 24399316	 24401165	+	NA	NA	NA	NA	MYOM3	"hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0,hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20chr1:24389316-24420770"	NA	inner
LNCA_21_P0006484	6.406627	P	6.7514563	P	0.787401136536374	0	lncRNA	TCONS_00017146	NA	NA	NA	NA	XLOC_007938	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007938), lincRNA [TCONS_00017146]"	chrX:18373618-18376810	hs|Xp22.13	Agilent_HUMAN_G3V2	TCONS_00017146	TCONS_00017146	chrX	 18373618	 18376810	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48576_PI429285431	1.0922459	A	0.8879907	A	1.15209141911378	0	lncRNA	52424-1_{1..628}	hg19_lincRNAsTranscripts_TCONS_l2_00014407 range=chr2:7214644-7218093 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014407 range=chr2:7214644-7218093 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	  7214644	  7215271	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25331_PI429285431	1.4492141	A	3.0964582	A	0.319249419112538	0	lncRNA	26863-1_{1..451}	lnc-HSP90AA1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSP90AA1-1:2	chr14	102518864	102519314	-	lnc-HSP90AA1-1	lnc-HSP90AA1-1:2	ENSG00000258959.1	RP11-1017G21.4	DYNC1H1	NA	chr14:102508864-102517135	inter
CUST_33595_PI429285431	8.340428	P	8.340428	P	1	0	lncRNA	35160-1_{1..298}	n340351|AF009260|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2812|NULL|-1.1411000|-0.1755660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340351|AF009260|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2812|NULL|-1.1411000|-0.1755660	chr5	  9250166	  9250463	-	NA	NA	NA	NA	SEMA5A	NA	chr5:9240166-9260464	inner
CUST_8535_PI429285431	0.8924191	A	0.8878409	A	1.00317840687959	0	lncRNA	10094-3_{6001..6806}	lnc-RUNDC3B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RUNDC3B-1:1	chr7	 87214000	 87214805	+	lnc-RUNDC3B-1	lnc-RUNDC3B-1:1	ENSG00000249009	ENST00000505724	ABCB1	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40chr7:87198000-87224789"	NA	inner
CUST_36769_PI429285431	5.9074616	P	6.043717	P	0.909877734358318	0	lncRNA	37941-1_{1..2257}	n345248|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_797|NULL|-1.3452200|-0.3517257	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345248|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_797|NULL|-1.3452200|-0.3517257	chr14	 21911320	 21913576	-	NA	NA	NA	NA	CHD8	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30chr14:21901320-21905457"	NA	inter
CUST_8185_PI429285431	3.6610432	P	4.539928	P	0.543787615436866	0	lncRNA	9784-1_{1..608}	lnc-C5orf39-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C5orf39-1:4	chr5	 43067400	 43068007	-	lnc-C5orf39-1	lnc-C5orf39-1:4	ENSG00000177738	CTD-2201E18.3	NA	NA	NA	inter
LNCA_21_P0001703	0.8928366	A	2.4099827	A	0.349376360245388	0	lncRNA	TCONS_00002153	NA	NA	NA	NA	XLOC_000385	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000385), lincRNA [TCONS_00002153]"	chr1:146646144-146648625	hs|1q21.1	Agilent_HUMAN_G3V2	TCONS_00002153	TCONS_00002153	chr1	146646144	146648625	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7604_PI429285431	1.3943888	A	2.1438568	A	0.594822860552005	0	lncRNA	9239-1_{1..3000}	lnc-XRCC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-XRCC3-1:1	chr14	104149195	104152194	-	lnc-XRCC3-1	lnc-XRCC3-1:1	ENSG00000246451	ENST00000498989	KLC1	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40chr14:104139195-104160352"	NA	inner
CUST_275_PI429201921	0.9001228	A	0.9001415	A	0.999987038231728	0	lncRNA	197-1_{1..3000}	TC09002540.hg.1	TCONS_l2_00029955-XLOC_l2_015195 // Broad TUCP // linc-FAM75A6-19 chr9:-:46698573-46705305 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:-:46698573-46705305	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00029955-XLOC_l2_015195	linc-FAM75A6-19	chr9	 46698573	 46705305	-	NA	NA	NA	NA	PTP4A2	NA	chr1:32372022-32397442	Unknown
CUST_27237_PI429285431	0.8827992	A	0.88448995	A	0.998828747856318	0	lncRNA	28784-1_{1..1349}	n324376|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042391|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042391|0.2328740|-0.2556204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324376|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042391|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042391|0.2328740|-0.2556204	chr6	137344994	137346342	-	NA	NA	NA	NA	IL20RA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr6:137334994-137366064"	NA	inner
CUST_13695_PI429285431	0.92092675	A	2.0464694	A	0.458329594770379	0	lncRNA	15335-1_{1..333}	lnc-STAU1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STAU1-1:1	chr20	 47662397	 47662729	-	lnc-STAU1-1	lnc-STAU1-1:1	XLOC_013781	linc-PREX1-2	CSE1L	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50chr20:47654895-47672581"	NA	inter
LNCA_21_P0013519	1.8247076	A	0.8892949	A	1.91243763237696	0	lncRNA	TCONS_l2_00028266	NA	NA	NA	NA	XLOC_l2_014565	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014565), lincRNA [TCONS_l2_00028266]"	chr8:82530227-82526040	hs|8q21.13	Agilent_HUMAN_G3V2	TCONS_l2_00028266	TCONS_l2_00028266	chr8	 82526040	 82530227	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49022_PI429285431	1.2492175	A	1.71123	A	0.725972849849272	0	lncRNA	52851-1_{1..860}	hg19_lincRNAsTranscripts_TCONS_l2_00021103 range=chr4:36498012-36586347 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021103 range=chr4:36498012-36586347 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 36498012	 36498871	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30681_PI429285431	0.8904479	A	1.1589776	A	0.830165164635273	0	lncRNA	32463-1_{1..322}	n336166|X92060|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324538|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324538|0.9181070|-0.1171618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336166|X92060|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324538|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324538|0.9181070|-0.1171618	chr14	 22392606	 22392927	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002252	0.8912919	A	0.8886714	A	1.0018180428262	0	lncRNA	TCONS_00004838	NA	NA	NA	NA	XLOC_001558	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001558), lincRNA [TCONS_00004838]"	chr2:86131893-86131952	hs|2p11.2	Agilent_HUMAN_G3V2	TCONS_00004838	TCONS_00004838	chr2	 86131893	 86131952	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27273_PI429285431	1.5502346	A	2.4322681	A	0.542602086340559	0	lncRNA	28829-1_{1..465}	n324422|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041773|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041773|-1.3991100|-0.2570043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324422|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041773|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041773|-1.3991100|-0.2570043	chr6	110254417	110254881	+	NA	NA	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0,hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0 3'pad=0 strand=- repeatMasking=none,-59.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_24480_PI429285431	9.0515585	P	9.708509	P	0.634217459788812	0	lncRNA	26032-1_{1..2251}	lnc-FAM22E-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-FAM22E-1:2	chr10	 81599384	 81601634	+	lnc-FAM22E-1	lnc-FAM22E-1:2	ENSG00000224428.2	RP11-182L21.2	NA	NA	NA	inter
CUST_379_PI429201921	0.89660907	A	0.90502125	A	0.994186087732004	0	lncRNA	244-1_{1..3000}	TC08002162.hg.1	TCONS_l2_00028034-XLOC_l2_014388 // Broad TUCP // linc-ZNF517 chr8:+:145925736-145934941 // chr8 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00028035-XLOC_l2_014388 // Broad TUCP // linc-ZNF517 chr8:+:145926088-145934575 // chr8 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00028036-XLOC_l2_014388 // Broad TUCP // linc-ZNF517 chr8:+:145931394-145932554 // chr8 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr8:+:145925736-145934941	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00028034-XLOC_l2_014388	linc-ZNF517	chr8	145925736	145934941	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36689_PI429285431	3.7925522	P	4.632539	P	0.558648680392729	0	lncRNA	37872-1_{1..1287}	n345179|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_728|NULL|-1.2678700|-0.2282776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345179|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_728|NULL|-1.2678700|-0.2282776	chr12	 52221963	 52223249	-	NA	NA	NA	NA	FIGNL2	NA	chr12:52211963-52225701	inner
CUST_29214_PI429285431	4.125981	P	4.889313	P	0.589134113897317	0	lncRNA	30963-1_{1..630}	n326737|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097859|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097859|-0.5514350|-0.2330396	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326737|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097859|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097859|-0.5514350|-0.2330396	chr1	   842612	   843241	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40"	NA	inter
CUST_30161_PI429285431	4.5969906	P	5.3095274	P	0.610246152839818	0	lncRNA	31935-1_{1..516}	n334837|AJ303362|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246886|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246886|3.4250900|-0.2329646	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334837|AJ303362|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246886|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246886|3.4250900|-0.2329646	chr11	 45267944	 45268459	-	NA	NA	NA	NA	SYT13	NA	chr11:45261853-45285917	inner
CUST_49678_PI429285431	1.8944396	A	1.9090022	A	0.989956748559479	0	lncRNA	53456-1_{1..357}	hg19_lincRNAsTranscripts_TCONS_l2_00027517 range=chr7:149255877-149318241 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027517 range=chr7:149255877-149318241 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	149255877	149256233	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013789	4.9525404	P	5.0326376	P	0.945993909273826	0	lncRNA	TCONS_l2_00030324	NA	NA	NA	NA	XLOC_l2_015593	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015593), lincRNA [TCONS_l2_00030324]"	chrX:106790446-106793311	hs|Xq22.3	Agilent_HUMAN_G3V2	TCONS_l2_00030324	TCONS_l2_00030324	chrX	106790446	106793311	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22668_PI429285431	0.8965926	A	0.90040094	A	0.997363740916676	0	lncRNA	24252-1_{1..576}	lnc-ARID4A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARID4A-1:1	chr14	 58736279	 58736854	+	lnc-ARID4A-1	lnc-ARID4A-1:1	ENSG00000258682.1	CTD-2002H8.2	PSMA3	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70chr14:58726279-58738727"	NA	inner
CUST_31479_PI429285431	8.912011	P	8.569196	P	1.2682287610982	0	lncRNA	33245-1_{1..1886}	n337959|CR596789|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|344|NULL|-1.1892900|-0.1747153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337959|CR596789|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|344|NULL|-1.1892900|-0.1747153	chr1	 54751085	 54752970	+	NA	NA	NA	NA	SSBP3	NA	chr1:54741085-54763827	inner
CUST_42217_PI429285431	7.1412477	P	7.3682055	P	0.854434733433121	0	lncRNA	44319-1_{1..83}	ENST00000577966 ncrna:miRNA chromosome:GRCh37:11:46397952:46398034:1 gene:ENSG00000264102 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577966 ncrna:miRNA chromosome:GRCh37:11:46397952:46398034:1 gene:ENSG00000264102 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 46397952	 46398034	+	ENSG00000264102	ENST00000577966	NA	NA	DGKZ	NA	chr11:46387952-46402104	inner
CUST_1659_PI429285431	0.90490097	A	0.91340184	A	0.994124971798693	0	lncRNA	1644-1_{1..839}	"transcript_id ""ENST00000597871.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597871.1"" | genecode_v17"	chr3	195435159	195435997	+	ENSG00000242086.3	ENST00000597871.1	AC069513.3	AC069513.3-018	MUC20	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.42;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-30.01;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40chr3:195447753-195453543"	NA	inter
CUST_5381_PI429285431	3.0011432	P	3.2432673	P	0.845499554745349	0	lncRNA	5316-2_{3001..3343}	"transcript_id ""ENST00000568394.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568394.1"" | genecode_v17"	chr16	  1028761	  1029103	-	ENSG00000260807.2	ENST00000568394.1	RP11-161M6.2	RP11-161M6.2-002	LMF1	NA	chr16:1015761-1031318	inter
CUST_51241_PI429285431	2.4221435	A	2.7239149	A	0.811255691652786	0	lncRNA	54854-1_{1..202}	hg19_lincRNAsTranscripts_TCONS_l2_00008929 range=chr15:23185201-23191590 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008929 range=chr15:23185201-23191590 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 23185201	 23185402	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29835_PI429285431	7.4830294	P	7.684148	P	0.869875839663741	0	lncRNA	31598-1_{1..405}	n333677|D88799|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000102025|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000102025|2.0524100|-0.2011690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333677|D88799|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000102025|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000102025|2.0524100|-0.2011690	chr5	140798356	140798760	+	NA	NA	NA	NA	PCDHGA1	NA	chr5:140788356-140808761	inner
CUST_42344_PI429285431	7.1484485	P	7.2679334	P	0.920516253186022	0	lncRNA	45003-1_{1..132}	ENST00000362696 ncrna:snoRNA chromosome:GRCh37:12:47739949:47740080:-1 gene:ENSG00000199566 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362696 ncrna:snoRNA chromosome:GRCh37:12:47739949:47740080:-1 gene:ENSG00000199566 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 47739949	 47740080	-	ENSG00000199566	ENST00000362696	NA	NA	NA	NA	NA	inter
CUST_36927_PI429285431	0.91445607	A	0.9182684	A	0.997360982554229	0	lncRNA	38082-1_{1..1317}	n345396|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_945|NULL|-1.2833400|-0.3854945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345396|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_945|NULL|-1.2833400|-0.3854945	chr21	 21537613	 21538929	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16725_PI429285431	1.219071	A	0.9097853	A	1.23909405394782	0	lncRNA	18432-1_{1..542}	lnc-ZNF621-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF621-1:1	chr3	 40685508	 40686049	+	lnc-ZNF621-1	lnc-ZNF621-1:1	XLOC_002621	linc-CTNNB1-3	NA	NA	NA	inter
CUST_1215_PI429285431	1.8535085	A	1.9395294	A	0.942117625558872	0	lncRNA	1206-1_{1..588}	"transcript_id ""ENST00000444017.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444017.1"" | genecode_v17"	chr2	205334799	205335386	-	ENSG00000236634.1	ENST00000444017.1	AC016903.1	AC016903.1-001	NA	NA	NA	inter
CUST_7250_PI429285431	1.7624667	A	2.0195706	A	0.836765978307776	0	lncRNA	7957-1_{1..338}	"transcript_id ""ENST00000362770.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000362770.1"" | genecode_v17"	chr8	 50242769	 50243106	+	ENSG00000199640.1	ENST00000362770.1	RN7SKP294	RN7SKP294-201	NA	NA	NA	inter
LNCA_21_P0009624	0.9033053	A	0.89889634	A	1.00306073269968	0	lncRNA	TCONS_00026678	NA	NA	NA	NA	XLOC_012773	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012773), lincRNA [TCONS_00026678]"	chr18:12031951-12031142	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_00026678	TCONS_00026678	chr18	 12031142	 12031951	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3735_PI429285431	0.89329344	A	0.88865614	A	1.00321950292314	0	lncRNA	3704-1_{1..502}	"transcript_id ""ENST00000418818.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418818.2"" | genecode_v17"	chr10	 77039484	 77039985	-	ENSG00000270087.1	ENST00000418818.2	RP11-399K21.11	RP11-399K21.11-002	ZNF503	NA	chr10:77141975-77161513	inter
CUST_44689_PI429285431	3.2419863	P	3.3612318	P	0.920669015807329	0	lncRNA	49248-1_{1..2785}	"gi|333944029|ref|NR_038292.1| Homo sapiens uncharacterized LOC100507173 (LOC100507173), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|333944029|ref|NR_038292.1| Homo sapiens uncharacterized LOC100507173 (LOC100507173), transcript variant 1, non-coding RNA"	Chr6	 27661858	 27664642	+	100507173	NR_038292.1	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
LNCA_19_P00319184	1.7248441	A	2.6266012	A	0.535234456617841	0	lncRNA	ENST00000412410	NA	NA	NA	NA	XLOC_006560	NA	ENST00000412410	NA	NA	"BROAD Institute lincRNA (XLOC_006560), lincRNA [TCONS_00013224]"	chr7:109202864-109202805	hs|7q31.1	Agilent_HUMAN_G3V2	ENST00000412410	ENST00000412410	chr7	109202805	109202864	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26174_PI429285431	4.669671	P	4.9241405	P	0.838295331415367	0	lncRNA	27685-1_{1..321}	lnc-ADAR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAR-1:1	chr1	154552093	154552413	-	lnc-ADAR-1	lnc-ADAR-1:1	ENSG00000233875.1	RP11-61L14.6	CHRNB2	NA	chr1:154542093-154552354	inner
CUST_12036_PI429285431	3.6320968	P	3.7686577	P	0.909685082265309	0	lncRNA	13620-1_{1..308}	lnc-DHX37-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-7:1	chr12	126921485	126921792	-	lnc-DHX37-7	lnc-DHX37-7:1	XLOC_010241	linc-DHX37-6	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60"	NA	inter
LNCA_21_P0007050	0.8998022	A	0.8950131	A	1.00332506697403	0	lncRNA	TCONS_00018686	NA	NA	NA	NA	XLOC_008416	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008416), lincRNA [TCONS_00018686]"	chr10:25974865-25975325	hs|10p12.1	Agilent_HUMAN_G3V2	TCONS_00018686	TCONS_00018686	chr10	 25974865	 25975325	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22045_PI429285431	0.90049326	A	0.9221039	A	0.985132278250796	0	lncRNA	23653-1_{1..572}	lnc-RP11-124K4.2.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RP11-124K4.2.1-3:1	chr16	  6626913	  6627484	+	lnc-RP11-124K4.2.1-3	lnc-RP11-124K4.2.1-3:1	ENSG00000260835.1	RP11-468I15.1	RBFOX1	NA	chr16:6616913-6637360	inner
CUST_22724_PI429285431	5.94595	P	4.537087	P	2.65527815648856	0	lncRNA	24308-1_{1..1914}	lnc-PMM2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PMM2-5:1	chr16	  9198705	  9200618	+	lnc-PMM2-5	lnc-PMM2-5:1	ENSG00000262944.1	RP11-473I1.9	C16orf72	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60chr16:9188705-9210618"	NA	inner
CUST_13884_PI429285431	1.3814083	A	0.9084196	A	1.38798184751756	0	lncRNA	15527-1_{1..771}	lnc-COL1A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL1A2-1:1	chr7	 94017778	 94018548	+	lnc-COL1A2-1	lnc-COL1A2-1:1	XLOC_006174	linc-COL1A2-1	COL1A2	NA	chr7:94023873-94028102	inter
CUST_4793_PI429285431	1.5385001	A	1.0993198	A	1.35583376077277	0	lncRNA	4737-1_{1..548}	"transcript_id ""ENST00000546784.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546784.2"" | genecode_v17"	chr14	 45846471	 45847018	+	ENSG00000257900.2	ENST00000546784.2	RP11-454K7.1	RP11-454K7.1-001	NA	NA	NA	inter
LNCA_21_P0008147	0.90945053	A	0.9255301	A	0.988916372458941	0	lncRNA	TCONS_00021980	NA	NA	NA	NA	XLOC_010582	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010582), lincRNA [TCONS_00021980]"	chr13:43312703-43312644	hs|13q14.11	Agilent_HUMAN_G3V2	TCONS_00021980	TCONS_00021980	chr13	 43312644	 43312703	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8946_PI429285431	3.3241463	A	2.8978589	A	1.34377109237019	0	lncRNA	10480-1_{1..872}	lnc-RP11-809H16.2.1-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-809H16.2.1-2:8	chr15	 69387041	 69387912	+	lnc-RP11-809H16.2.1-2	lnc-RP11-809H16.2.1-2:8	ENSG00000212766	NCRNA00277	NA	NA	NA	inter
CUST_46293_PI429285431	5.34918	P	5.352462	P	0.997727676597913	0	lncRNA	50526-2_{3001..3838}	"gi|254553338|ref|NR_028100.1| Homo sapiens DDB1 and CUL4 associated factor 11 (DCAF11), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254553338|ref|NR_028100.1| Homo sapiens DDB1 and CUL4 associated factor 11 (DCAF11), transcript variant 5, non-coding RNA"	Chr14	 24587492	 24588329	+	80344	NR_028100.1	NA	NA	NA	"hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50"	NA	inter
CUST_32368_PI429285431	0.90417945	A	0.9950287	A	0.938969856969109	0	lncRNA	34045-2_{3001..4684}	n338955|AK160385|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1383|NULL|1.2464900|-0.1769585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338955|AK160385|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1383|NULL|1.2464900|-0.1769585	chr19	 56107725	 56109408	-	NA	NA	NA	NA	FIZ1	NA	chr19:56102737-56110893	inner
LNCA_21_P0014369	0.9117404	A	1.9917376	A	0.473029741423756	0	lncRNA	XR_109485	XR_109485	XR_109485	NA	NA	LOC100505825	uncharacterized LOC100505825	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505825 (LOC100505825), miscRNA [XR_109485]"	chr19:48968790-48968731	hs|19q13.33	Agilent_HUMAN_G3V2	XR_109485	XR_109485	chr19	 48968731	 48968790	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32618_PI429285431	0.913219	A	0.9205681	A	0.99491894451118	0	lncRNA	34277-1_{1..2920}	n339241|AL080152|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1673|NULL|0.0258328|-0.3889341	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339241|AL080152|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1673|NULL|0.0258328|-0.3889341	chr16	 66785654	 66788573	+	NA	NA	NA	NA	CCDC79	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-60.60chr16:66788879-66798646"	NA	inter
CUST_17538_PI429285431	5.8076825	P	5.879016	P	0.951757870353147	0	lncRNA	19263-1_{1..646}	lnc-CITED2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CITED2-4:1	chr6	140415532	140416177	-	lnc-CITED2-4	lnc-CITED2-4:1	XLOC_005859	linc-CITED2-5	NA	NA	NA	inter
CUST_27514_PI429285431	0.9038028	A	0.902772	A	1.00071475142687	0	lncRNA	29084-1_{1..552}	n324692|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320635|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320635|-1.0960300|-0.2379157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324692|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320635|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320635|-1.0960300|-0.2379157	chr22	 25949257	 25949808	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40543_PI429285431	1.3351387	A	0.94506735	A	1.31045821234438	0	lncRNA	41301-1_{1..960}	n409667|NR_034067|lncRNA|Homosapiens||RefGeneNoncode|NR_034067||3.0398200|-0.2478786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409667|NR_034067|lncRNA|Homosapiens||RefGeneNoncode|NR_034067||3.0398200|-0.2478786	chr11	104757417	104758376	-	NA	NA	NA	NA	CASP12	NA	chr11:104756445-104769397	inter
CUST_26677_PI429285431	1.368287	A	1.9385431	A	0.673497221966135	0	lncRNA	28173-2_{3001..3214}	lncrnadb|megamind_Human_NR_038861__(LOC100507043_upstream_of_BDKRB2)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncrnadb20130808	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lncrnadb|megamind_Human_NR_038861__(LOC100507043_upstream_of_BDKRB2)	NA	     3000	     3213	NA	NA	NA	NA	NA	NA	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40"	NA	Unknown
LNCA_21_P0010948	2.8871303	A	3.6963837	P	0.570677109037731	0	lncRNA	ENST00000456546	NA	NA	NA	NA	XLOC_l2_002030	NA	ENST00000456546	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002030), lincRNA [TCONS_l2_00004211]"	chr10:81263951-81263892	hs|10q22.3	Agilent_HUMAN_G3V2	ENST00000456546	ENST00000456546	chr10	 81263892	 81263951	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41202_PI429285431	0.9021945	A	0.9112508	A	0.99374231258076	0	lncRNA	42077-1_{1..72}	ENST00000362298 ncrna:miRNA chromosome:GRCh37:X:73507121:73507192:-1 gene:ENSG00000199168 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362298 ncrna:miRNA chromosome:GRCh37:X:73507121:73507192:-1 gene:ENSG00000199168 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 73507121	 73507192	-	ENSG00000199168	ENST00000362298	NA	NA	NA	NA	NA	inter
CUST_30641_PI429285431	1.9501	A	2.7974153	A	0.555818091825347	0	lncRNA	32423-1_{1..240}	n336006|X75897|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323550|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323550|0.0667417|-0.3658354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336006|X75897|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323550|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323550|0.0667417|-0.3658354	chr4	  2965804	  2966043	+	NA	NA	NA	NA	GRK4	NA	chr4:2965343-3000554	inner
CUST_21240_PI429285431	6.9111385	P	6.138981	P	1.70782186268142	0	lncRNA	22866-1_{1..1033}	lnc-IGFBP7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IGFBP7-1:1	chr4	 57931655	 57932687	-	lnc-IGFBP7-1	lnc-IGFBP7-1:1	ENSG00000250610.1	RP11-738E22.2	IGFBP7	"hg19_refFlat_POLR2B:range=chr4:57845152-578971545'pad=0,hg19_refFlat_POLR2B:range=chr4:57845152-578971545'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80chr4:57921655-57941769"	NA	inner
CUST_13219_PI429285431	6.7597775	P	7.219725	P	0.72701271433648	0	lncRNA	14847-1_{1..404}	lnc-FBXO25-5:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXO25-5:9	chr8	  1212415	  1212818	+	lnc-FBXO25-5	lnc-FBXO25-5:9	XLOC_006683	linc-DLGAP2-5	NA	NA	NA	inter
CUST_6993_PI429285431	4.071247	P	3.9171078	P	1.11275748102107	0	lncRNA	6941-1_{1..544}	"transcript_id ""ENST00000420096.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420096.1"" | genecode_v17"	chr22	 42672361	 42672904	+	ENSG00000233903.1	ENST00000420096.1	Z83851.4	Z83851.4-001	NA	NA	NA	inter
CUST_11674_PI429285431	1.4227071	A	1.8888671	A	0.723888799900934	0	lncRNA	13252-1_{1..578}	lnc-HEATR2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HEATR2-3:2	chr7	   564491	   565068	+	lnc-HEATR2-3	lnc-HEATR2-3:2	XLOC_005958	linc-HEATR2-2	PDGFA	NA	chr7:554491-559481	inter
CUST_19760_PI429285431	3.7098439	P	4.1059175	P	0.759923659225735	0	lncRNA	21418-1_{1..643}	lnc-WDR82-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR82-1:1	chr3	 52332873	 52333515	-	lnc-WDR82-1	lnc-WDR82-1:1	ENSG00000242797.1	GLYCTK-AS1	GLYCTK	"hg19_refFlat_GLYCTK:range=chr3:52324359-523271425'pad=0,hg19_refFlat_GLYCTK:range=chr3:52324359-523271425'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.40chr3:52322873-52329272"	NA	inter
CUST_25461_PI429285431	3.8187165	P	4.469887	P	0.636763479493083	0	lncRNA	26991-1_{1..670}	lnc-C8orf55-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C8orf55-1:1	chr8	143847556	143848225	+	lnc-C8orf55-1	lnc-C8orf55-1:1	ENSG00000253196.1	RP11-706C16.7	LYNX1	NA	chr8:143845756-143857845	inner
CUST_11560_PI429285431	1.5890217	A	2.4406128	A	0.554173219817847	0	lncRNA	13136-1_{1..804}	lnc-MAP3K8-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP3K8-6:2	chr10	 30248544	 30249347	+	lnc-MAP3K8-6	lnc-MAP3K8-6:2	XLOC_008434	linc-MAP3K8-2	NA	NA	NA	inter
CUST_1865_PI429285431	0.957068	A	1.0977098	A	0.907115524443949	0	lncRNA	1855-1_{1..474}	"transcript_id ""ENST00000518701.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518701.1"" | genecode_v17"	chr4	120956188	120956661	-	ENSG00000253825.1	ENST00000518701.1	RP11-96A1.5	RP11-96A1.5-001	NA	NA	NA	inter
CUST_43775_PI429285431	8.062927	P	7.1379685	P	1.89862962587997	0	lncRNA	48507-1_{1..1597}	"gi|197102794|ref|NR_024080.1| Homo sapiens acid phosphatase 1, soluble (ACP1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|197102794|ref|NR_024080.1| Homo sapiens acid phosphatase 1, soluble (ACP1), transcript variant 1, non-coding RNA"	Chr2	   264869	   266465	+	52	NR_024080.1	NA	NA	NA	NA	NA	inter
CUST_42849_PI429285431	4.173053	P	3.5899353	P	1.4980831481902	0	lncRNA	45891-1_{1..166}	ENST00000517138 ncrna:snoRNA chromosome:GRCh37:1:28160912:28161077:1 gene:ENSG00000252947 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517138 ncrna:snoRNA chromosome:GRCh37:1:28160912:28161077:1 gene:ENSG00000252947 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 28160912	 28161077	+	ENSG00000252947	ENST00000517138	NA	NA	STX12	NA	chr1:28150912-28150963	inner
CUST_7914_PI429285431	0.8962719	A	0.89738333	A	0.999229912099116	0	lncRNA	9529-1_{1..3000}	lnc-TMEM189-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM189-2:1	chr20	 48881905	 48884904	-	lnc-TMEM189-2	lnc-TMEM189-2:1	ENSG00000250931	ENST00000513193	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.31;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70"	NA	inter
CUST_8755_PI429285431	0.8933104	A	1.488063	A	0.662157995369454	0	lncRNA	10297-1_{1..1798}	lnc-ABI1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ABI1-4:1	chr10	 26854421	 26856218	-	lnc-ABI1-4	lnc-ABI1-4:1	ENSG00000246873	AL160287.1	APBB1IP	"hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40chr10:26844421-26856732"	NA	inner
CUST_3687_PI429285431	8.131222	P	8.37702	P	0.843349184135879	0	lncRNA	3655-1_{1..2877}	"transcript_id ""ENST00000422732.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000422732.2"" | genecode_v17"	chr10	 47096454	 47099330	-	ENSG00000223477.2	ENST00000422732.2	LINC00842	LINC00842-001	ANXA8L1	NA	chr10:47157989-47161400	inter
CUST_2000_PI429285431	0.9130835	A	1.5099244	A	0.661200215523073	0	lncRNA	1991-1_{1..2040}	"transcript_id ""ENST00000512674.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512674.1"" | genecode_v17"	chr4	185286341	185288380	-	ENSG00000249096.1	ENST00000512674.1	RP11-290F5.1	RP11-290F5.1-001	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00"	NA	inter
CUST_20848_PI429285431	0.8935702	A	0.89252317	A	1.00072600930973	0	lncRNA	22479-1_{1..522}	lnc-DAP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DAP-2:1	chr5	 10628044	 10628565	-	lnc-DAP-2	lnc-DAP-2:1	ENSG00000250106.1	ANKRD33B-AS1	ANKRD33B	NA	chr5:10618044-10638337	inner
CUST_98_PI429285431	7.2047105	P	7.1459775	P	1.04155065108148	0	lncRNA	90-1_{1..712}	"transcript_id ""ENST00000473358.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000473358.1"" | genecode_v17"	chr1	    29554	    30265	+	ENSG00000243485.1	ENST00000473358.1	MIR1302-2	MIR1302-2-001	NA	NA	NA	inter
CUST_45765_PI429285431	1.9253647	A	2.1863427	A	0.834522006883056	0	lncRNA	50110-1_{1..910}	"gi|378548184|ref|NR_046374.1| Homo sapiens MRVI1 antisense RNA 1 (MRVI1-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|378548184|ref|NR_046374.1| Homo sapiens MRVI1 antisense RNA 1 (MRVI1-AS1), transcript variant 1, non-coding RNA"	Chr11	 10562783	 10563692	+	100129827	NR_046374.1	NA	NA	NA	"hg19_refFlat_MRVI1:range=chr11:10597879-106737695'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-106737695'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_MRVI1:range=chr11:10597879-106555705'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-106555705'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_MRVI1:range=chr11:10597879-107151495'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-107151495'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_MRVI1:range=chr11:10597879-106479355'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-106479355'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50"	NA	inter
CUST_25574_PI429285431	0.8997167	A	1.0224684	A	0.918434218984291	0	lncRNA	27103-1_{1..459}	lnc-COMMD7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COMMD7-1:1	chr20	 31441984	 31442442	-	lnc-COMMD7-1	lnc-COMMD7-1:1	ENSG00000260536.1	RP5-1085F17.4	EFCAB8	NA	chr20:31446729-31452063	inter
CUST_49847_PI429285431	1.287868	A	0.97813416	A	1.23947900977437	0	lncRNA	53602-4_{9001..12000}	hg19_lincRNAsTranscripts_TCONS_l2_00026657 range=chr7:65982683-66057999 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026657 range=chr7:65982683-66057999 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 65991683	 65994682	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-59.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_GTF2IRD1:range=chr7:73922411-740167605'pad=0,hg19_refFlat_GTF2IRD1:range=chr7:73922411-740167605'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.01;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.90;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_34447_PI429285431	0.8829672	A	0.8817209	A	1.00086424257371	0	lncRNA	35923-2_{3001..3791}	n341321|BX648653|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3790|NULL|-1.1317500|-0.3408040	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341321|BX648653|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3790|NULL|-1.1317500|-0.3408040	chr7	131181722	131182512	-	NA	NA	NA	NA	MKLN1	NA	chr7:131168722-131181398	inner
CUST_21625_PI429285431	0.89396495	A	0.90040326	A	0.995547246609204	0	lncRNA	23237-1_{1..896}	lnc-CETN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-CETN3-1:1	chr5	 89684285	 89685180	-	lnc-CETN3-1	lnc-CETN3-1:1	ENSG00000260871.1	CTD-2373J6.1	CETN3	NA	chr5:89689528-89695180	inter
LNCA_21_P0014709	1.8116841	A	3.7841792	P	0.254811960096039	0	lncRNA	XR_112375	XR_112375	XR_112375	NA	Hs.656660	LOC100509100	uncharacterized LOC100509100	NA	THC2498666	NA	"PREDICTED: Homo sapiens hypothetical LOC100509100 (LOC100509100), miscRNA [XR_112375]"	chr2:113998255-113998314	hs|2q13	Agilent_HUMAN_G3V2	XR_112375	XR_112375	chr2	113998255	113998314	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42038_PI429285431	8.502691	P	9.158579	P	0.63468471324838	0	lncRNA	43916-1_{1..120}	ENST00000582846 ncrna:miRNA chromosome:GRCh37:17:40666206:40666325:1 gene:ENSG00000265611 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582846 ncrna:miRNA chromosome:GRCh37:17:40666206:40666325:1 gene:ENSG00000265611 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 40666206	 40666325	+	ENSG00000265611	ENST00000582846	NA	NA	ATP6V0A1	NA	chr17:40656206-40674597	inner
CUST_36399_PI429285431	0.8880739	A	0.89172214	A	0.997474427368547	0	lncRNA	37617-1_{1..2942}	n344916|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_465|NULL|-1.4097000|-0.4721185	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344916|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_465|NULL|-1.4097000|-0.4721185	chr6	 86304944	 86307885	-	NA	NA	NA	NA	SNX14	NA	chr6:86294944-86303629	inter
CUST_44600_PI429285431	2.697968	A	7.034456	P	0.0494979298877228	0	lncRNA	49176-1_{1..1722}	"gi|212286160|ref|NR_024418.1| Homo sapiens uncharacterized LOC389332 (LOC389332), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|212286160|ref|NR_024418.1| Homo sapiens uncharacterized LOC389332 (LOC389332), non-coding RNA"	Chr5	135527156	135528877	-	389332	NR_024418.1	NA	NA	NA	NA	NA	inter
CUST_48213_PI429285431	0.894184	A	0.8909842	A	1.00222039377973	0	lncRNA	52076-1_{1..509}	hg19_lincRNAsTranscripts_TCONS_l2_00001282 range=chr1:68808088-68849925 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001282 range=chr1:68808088-68849925 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 68808088	 68808596	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49034_PI429285431	7.5239806	P	7.404855	P	1.0860764052428	0	lncRNA	52863-1_{1..710}	hg19_lincRNAsTranscripts_TCONS_l2_00020595 range=chr4:79966258-80229789 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020595 range=chr4:79966258-80229789 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 79966258	 79966967	+	NA	NA	NA	NA	NAA11	NA	chr4:80238272-80239789	inter
LNCA_21_P0009475	6.192425	P	6.2932997	P	0.932467468970855	0	lncRNA	TCONS_00026327	NA	NA	NA	NA	XLOC_012667	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012667), lincRNA [TCONS_00026327]"	chr18:44338356-44338415	hs|18q21.1	Agilent_HUMAN_G3V2	TCONS_00026327	TCONS_00026327	chr18	 44338356	 44338415	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_364_PI429201921	0.91327065	A	2.0094795	A	0.467744031616172	0	lncRNA	233-2_{3001..6000}	TC04002667.hg.1	TCONS_l2_00021942-XLOC_l2_011214 // Broad TUCP // linc-TBCK chr4:-:107279554-107288359 // chr4 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr4:-:107279554-107288359	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00021942-XLOC_l2_011214	linc-TBCK	chr4	107279554	107288359	-	NA	NA	NA	NA	DAB1	NA	chr1:57842248-57863122	Unknown
CUST_27236_PI429285431	0.89014846	A	1.0036548	A	0.924338807702425	0	lncRNA	28783-1_{1..523}	n324375|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042407|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042407|-1.1968800|-0.3514963	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324375|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042407|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042407|-1.1968800|-0.3514963	chr6	138036289	138036811	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49631_PI429285431	4.5019617	P	5.0818787	P	0.669002264799723	0	lncRNA	53415-1_{1..1342}	hg19_lincRNAsTranscripts_TCONS_l2_00025695 range=chr7:17414406-17506843 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025695 range=chr7:17414406-17506843 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 17414406	 17415747	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51677_PI429285431	7.9284177	P	7.6958566	P	1.17491883753599	0	lncRNA	55239-1_{1..414}	hg19_lincRNAsTranscripts_TCONS_l2_00010948 range=chr17:67957744-67977392 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010948 range=chr17:67957744-67977392 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 67957744	 67958157	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004266	0.89779824	A	1.8689481	A	0.510099340284562	0	lncRNA	TCONS_00009999	NA	NA	NA	NA	XLOC_004431	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004431), lincRNA [TCONS_00009999]"	chr5:74906521-74906580	hs|5q13.3	Agilent_HUMAN_G3V2	TCONS_00009999	TCONS_00009999	chr5	 74906521	 74906580	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42496_PI429285431	8.930334	P	9.255859	P	0.798007936612748	0	lncRNA	45265-1_{1..71}	ENST00000363507 ncrna:snoRNA chromosome:GRCh37:2:154303327:154303397:-1 gene:ENSG00000200377 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363507 ncrna:snoRNA chromosome:GRCh37:2:154303327:154303397:-1 gene:ENSG00000200377 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	154303327	154303397	-	ENSG00000200377	ENST00000363507	NA	NA	RPRM	NA	chr2:154293327-154313397	inter
CUST_29050_PI429285431	0.90527654	A	0.9144913	A	0.993633169792543	0	lncRNA	30779-1_{1..400}	n326540|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027495|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027495|-0.9758370|-0.3602096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326540|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027495|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027495|-0.9758370|-0.3602096	chr1	 84069891	 84070290	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50520_PI429285431	0.91565377	A	0.91329414	A	1.00163690915723	0	lncRNA	54216-1_{1..269}	hg19_lincRNAsTranscripts_TCONS_l2_00030612 range=chrX:135025017-135026977 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030612 range=chrX:135025017-135026977 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	135025017	135025285	-	NA	NA	NA	NA	MMGT1	NA	chrX:135026956-135036977	inter
CUST_14765_PI429285431	0.89540124	A	0.8913971	A	1.00277931350188	0	lncRNA	16426-1_{1..292}	lnc-ROBO1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ROBO1-2:1	chr3	 78078902	 78079193	-	lnc-ROBO1-2	lnc-ROBO1-2:1	XLOC_003165	linc-ZNF717-1	NA	NA	NA	inter
CUST_51957_PI429285431	3.4570045	P	4.345203	P	0.540288357784011	0	lncRNA	55500-1_{1..501}	hg19_lincRNAsTranscripts_TCONS_l2_00016225 range=chr20:25990462-26031567 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016225 range=chr20:25990462-26031567 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 25990462	 25990962	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27970_PI429285431	0.88543177	A	0.88639057	A	0.999335631273978	0	lncRNA	29574-1_{1..580}	n325219|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329211|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329211|-1.3415800|-0.5117863	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325219|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329211|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329211|-1.3415800|-0.5117863	chr2	103839859	103840438	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32561_PI429285431	1.2711288	A	2.4549613	A	0.440180609731323	0	lncRNA	34225-1_{1..2313}	n339178|AK055943|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1609|NULL|-0.8717040|-0.1954295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339178|AK055943|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1609|NULL|-0.8717040|-0.1954295	chr16	 30770175	 30772487	+	NA	NA	NA	NA	PHKG2	"hg19_refFlat_C16orf93:range=chr16:30771540-307730695'pad=0,hg19_refFlat_C16orf93:range=chr16:30771540-307730695'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_C16orf93:range=chr16:30768797-307730695'pad=0,hg19_refFlat_C16orf93:range=chr16:30768797-307730695'pad=0 3'pad=0 strand=- repeatMasking=none,-95.50chr16:30760175-30772497"	NA	inner
CUST_14062_PI429285431	3.5635898	P	3.7707944	P	0.866214003026645	0	lncRNA	15708-1_{1..445}	lnc-FRMD1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-FRMD1-3:1	chr6	168702757	168703201	-	lnc-FRMD1-3	lnc-FRMD1-3:1	XLOC_005929	linc-FRMD1-1	DACT2	NA	chr6:168707584-168712794	inter
LNCA_21_P0007427	0.9031509	A	0.8989005	A	1.00295049694949	0	lncRNA	TCONS_00019856	NA	NA	NA	NA	XLOC_009069	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009069), lincRNA [TCONS_00019856]"	chr11:12661963-12662022	hs|11p15.3	Agilent_HUMAN_G3V2	TCONS_00019856	TCONS_00019856	chr11	 12661963	 12662022	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001719	0.9031509	A	0.8988817	A	1.00296356665006	0	lncRNA	XR_109872	XR_109872	XR_109872	NA	NA	LOC100506022	uncharacterized LOC100506022	NA	THC2516710	NA	"PREDICTED: Homo sapiens hypothetical LOC100506022 (LOC100506022), miscRNA [XR_109872]"	chr1:9486868-9486809	hs|1p36.22	Agilent_HUMAN_G3V2	XR_109872	XR_109872	chr1	  9486809	  9486868	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30627_PI429285431	0.9017344	A	1.5993388	A	0.616595215525584	0	lncRNA	32409-1_{1..378}	n335971|X72477|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323319|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323319|2.6667400|-0.1861027	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335971|X72477|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323319|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323319|2.6667400|-0.1861027	chr2	 89161388	 89161765	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50581_PI429285431	1.4250174	A	1.1434509	A	1.21551399150787	0	lncRNA	54274-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00003494 range=chr10:42987306-43048243 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003494 range=chr10:42987306-43048243 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 42987306	 42990305	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10649_PI429285431	4.2148895	P	4.6573997	P	0.73585315523811	0	lncRNA	12181-1_{1..455}	lnc-C8orf4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C8orf4-2:1	chr8	 39984600	 39985054	+	lnc-C8orf4-2	lnc-C8orf4-2:1	XLOC_006780	linc-C8orf4-1	NA	NA	NA	inter
CUST_2427_PI429285431	1.1771725	A	1.3903818	A	0.86261619081256	0	lncRNA	2419-1_{1..539}	"transcript_id ""ENST00000523205.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523205.1"" | genecode_v17"	chr5	172841038	172841576	+	ENSG00000253968.1	ENST00000523205.1	CTB-32H22.1	CTB-32H22.1-001	NA	NA	NA	inter
CUST_32717_PI429285431	5.3725967	P	5.9231954	P	0.682736742559779	0	lncRNA	34360-1_{1..1277}	n339348|BC067356|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1780|NULL|-0.9700270|-0.2004871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339348|BC067356|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1780|NULL|-0.9700270|-0.2004871	chr3	 47455557	 47456833	+	NA	NA	NA	NA	PTPN23	"hg19_refFlat_SCAP:range=chr3:47455344-474844835'pad=0,hg19_refFlat_SCAP:range=chr3:47455344-474844835'pad=0 3'pad=0 strand=- repeatMasking=none,-100.30chr3:47445557-47454931"	NA	inner
LNCA_21_P0002520	0.90191364	A	1.9466063	A	0.484748164269141	0	lncRNA	TCONS_00004496	NA	NA	NA	NA	XLOC_002390	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002390), lincRNA [TCONS_00004496]"	chr2:172127840-172127781	hs|2q31.1	Agilent_HUMAN_G3V2	TCONS_00004496	TCONS_00004496	chr2	172127781	172127840	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008173	0.90159494	A	0.89707994	A	1.00313446170418	0	lncRNA	TCONS_00022037	NA	NA	NA	NA	XLOC_010636	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010636), lincRNA [TCONS_00022037]"	chr13:63113909-63113850	hs|13q21.31	Agilent_HUMAN_G3V2	TCONS_00022037	TCONS_00022037	chr13	 63113850	 63113909	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008313	0.9003854	A	2.221839	A	0.400131579554075	0	lncRNA	TCONS_00022456	NA	NA	NA	NA	XLOC_010784	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010784), lincRNA [TCONS_00022456]"	chr14:29634776-29636679	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022456	TCONS_00022456	chr14	 29634776	 29636679	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41082_PI429285431	5.9323635	P	6.276718	P	0.787660317843093	0	lncRNA	41767-1_{1..84}	ENST00000408168 ncrna:miRNA chromosome:GRCh37:15:82769264:82769347:-1 gene:ENSG00000221095 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408168 ncrna:miRNA chromosome:GRCh37:15:82769264:82769347:-1 gene:ENSG00000221095 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 82769264	 82769347	-	ENSG00000221095	ENST00000408168	NA	NA	NA	NA	NA	inter
CUST_7528_PI429285431	4.1954446	P	4.7086716	P	0.700653471959636	0	lncRNA	9166-1_{1..1788}	lnc-NCAN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NCAN-1:1	chr19	 19376595	 19378382	+	lnc-NCAN-1	lnc-NCAN-1:1	ENSG00000250450	ENST00000513173	SUGP1	"hg19_refFlat_TM6SF2:range=chr19:19375473-193840245'pad=0,hg19_refFlat_TM6SF2:range=chr19:19375473-193840245'pad=0 3'pad=0 strand=- repeatMasking=none,-92.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70chr19:19387322-19387728"	NA	inner
CUST_21010_PI429285431	2.4863482	A	1.0329522	A	2.73851920898935	0	lncRNA	22639-1_{1..672}	lnc-AC018816.3.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC018816.3.1-4:1	chr3	  5228640	  5229311	-	lnc-AC018816.3.1-4	lnc-AC018816.3.1-4:1	ENSG00000233912.1	AC026202.3	EDEM1	NA	chr3:5229359-5239014	inter
CUST_20424_PI429285431	1.0057533	A	1.1488127	A	0.905596696169501	0	lncRNA	22067-1_{1..525}	lnc-FANCF-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FANCF-3:3	chr11	 22359541	 22360065	-	lnc-FANCF-3	lnc-FANCF-3:3	ENSG00000254768.1	CTD-2140G10.2	SLC17A6	NA	chr11:22359667-22369770	inner
CUST_44051_PI429285431	0.91557497	A	0.93698937	A	0.985266288212405	0	lncRNA	48726-1_{1..2306}	"gi|192807280|ref|NR_002763.2| Homo sapiens CPS1 intronic transcript 1 (non-protein coding) (CPS1-IT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|192807280|ref|NR_002763.2| Homo sapiens CPS1 intronic transcript 1 (non-protein coding) (CPS1-IT1), non-coding RNA"	Chr2	211482295	211484600	+	29034	NR_002763.2	NA	NA	NA	NA	NA	inter
CUST_29515_PI429285431	0.9804329	A	0.8937641	A	1.06191537423031	0	lncRNA	31273-1_{1..613}	n332952|AF090427|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000068210|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000068210|2.7287400|-0.2238507	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332952|AF090427|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000068210|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000068210|2.7287400|-0.2238507	chr15	 52630007	 52630619	-	NA	NA	NA	NA	MYO5A	NA	chr15:52620007-52653678	inner
CUST_23857_PI429285431	2.459722	A	2.8365624	A	0.770122365303932	0	lncRNA	25420-1_{1..3000}	lnc-TMEM55A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-TMEM55A-2:2	chr8	 92082159	 92085158	-	lnc-TMEM55A-2	lnc-TMEM55A-2:2	ENSG00000253738.1	GS1-251I9.4	OTUD6B	NA	chr8:92082424-92092351	inter
CUST_17188_PI429285431	0.89374375	A	1.0618029	A	0.890039241201945	0	lncRNA	18899-1_{1..508}	lnc-NGF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NGF-1:1	chr1	115819080	115819587	-	lnc-NGF-1	lnc-NGF-1:1	XLOC_000971	linc-TSPAN2	NGF	NA	chr1:115828537-115829102	inter
CUST_5419_PI429285431	0.8972093	A	0.9091549	A	0.991754126311007	0	lncRNA	5354-1_{1..3000}	"transcript_id ""ENST00000564305.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564305.1"" | genecode_v17"	chr16	  9449445	  9452444	+	ENSG00000261617.1	ENST00000564305.1	RP11-243A14.1	RP11-243A14.1-001	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00"	NA	inter
CUST_23590_PI429285431	2.258384	A	2.8290884	A	0.673287973378907	0	lncRNA	25157-1_{1..777}	lnc-AC108463.1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AC108463.1-3:4	chr2	112252462	112253238	-	lnc-AC108463.1-3	lnc-AC108463.1-3:4	ENSG00000172965.6	AC068491.1	NA	NA	NA	inter
CUST_46186_PI429285431	4.0172524	P	5.4412174	P	0.372686638024291	0	lncRNA	50432-1_{1..431}	"gi|341915656|ref|XR_132736.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 545 (LINC00545), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|341915656|ref|XR_132736.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 545 (LINC00545), misc_RNA"	NA	NA	NA	NA	NA	XR_132736.1	NA	NA	NA	NA	NA	Unknown
CUST_50617_PI429285431	0.8969127	A	0.92863834	A	0.97824949128485	0	lncRNA	54302-1_{1..276}	hg19_lincRNAsTranscripts_TCONS_l2_00003376 range=chr10:5319991-5324853 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003376 range=chr10:5319991-5324853 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	  5319991	  5320266	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1693_PI429285431	0.89714676	A	1.0341007	A	0.909437286358663	0	lncRNA	1676-1_{1..427}	"transcript_id ""ENST00000510639.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510639.1"" | genecode_v17"	chr4	 11771930	 11772356	+	ENSG00000249631.1	ENST00000510639.1	RP11-281P23.2	RP11-281P23.2-007	NA	NA	NA	inter
LNCA_21_P0001599	0.91117287	A	0.9200931	A	0.993836043334323	0	lncRNA	TCONS_00001746	NA	NA	NA	NA	XLOC_001121	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001121), lincRNA [TCONS_00001746]"	chr1:183412230-183412171	hs|1q25.3	Agilent_HUMAN_G3V2	TCONS_00001746	TCONS_00001746	chr1	183412171	183412230	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21091_PI429285431	5.38449	P	5.699139	P	0.804046587189759	0	lncRNA	22716-1_{1..336}	lnc-ERP44-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ERP44-1:1	chr9	102692090	102692425	-	lnc-ERP44-1	lnc-ERP44-1:1	ENSG00000254571.1	RP11-60I3.4	STX17	"hg19_refFlat_STX17:range=chr9:102677522-1027309555'pad=0,hg19_refFlat_STX17:range=chr9:102677522-1027309555'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30chr9:102682090-102702178"	NA	inner
CUST_34193_PI429285431	5.672798	P	6.2499876	P	0.670268202881626	0	lncRNA	35708-1_{1..1274}	n341046|BC029297|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3512|NULL|3.7115200|-0.0746067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341046|BC029297|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3512|NULL|3.7115200|-0.0746067	chr11	 64037533	 64038806	+	NA	NA	NA	NA	KCNK4	"hg19_refFlat_BAD:range=chr11:64037681-640518405'pad=0,hg19_refFlat_BAD:range=chr11:64037681-640518405'pad=0 3'pad=0 strand=- repeatMasking=none,-97.20chr11:64058793-64065562"	NA	inner
CUST_26002_PI429285431	1.5607768	A	0.9372493	A	1.54063755672677	0	lncRNA	27521-1_{1..2147}	lnc-CLEC16A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-CLEC16A-1:1	chr16	 11035043	 11037189	+	lnc-CLEC16A-1	lnc-CLEC16A-1:1	ENSG00000262222.1	RP11-876N24.4	CLEC16A	"hg19_refFlat_DEXI:range=chr16:11035575-110358625'pad=0,hg19_refFlat_DEXI:range=chr16:11035575-110358625'pad=0 3'pad=0 strand=- repeatMasking=none,-107.50chr16:11038345-11046878"	NA	inner
CUST_14988_PI429285431	5.883275	P	6.0333905	P	0.901178312739395	0	lncRNA	16651-1_{1..547}	lnc-TBC1D19-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBC1D19-4:4	chr4	 26860235	 26860781	+	lnc-TBC1D19-4	lnc-TBC1D19-4:4	XLOC_003483	linc-STIM2-1	STIM2	NA	chr4:26862313-26870575	inter
LNCA_21_P0008636	1.3943709	A	1.6094898	A	0.861475158138999	0	lncRNA	TCONS_00023422	NA	NA	NA	NA	XLOC_011264	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011264), lincRNA [TCONS_00023422]"	chr15:57600023-57600082	hs|15q21.3	Agilent_HUMAN_G3V2	TCONS_00023422	TCONS_00023422	chr15	 57600023	 57600082	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20750_PI429285431	2.729116	A	3.0203552	A	0.817199824865998	0	lncRNA	22384-1_{1..471}	lnc-ASF1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASF1A-1:1	chr6	119352570	119353040	+	lnc-ASF1A-1	lnc-ASF1A-1:1	ENSG00000253194.1	RP11-351A11.1	FAM184A	"hg19_refFlat_FAM184A:range=chr6:119281268-1193994645'pad=0,hg19_refFlat_FAM184A:range=chr6:119281268-1193994645'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FAM184A:range=chr6:119281268-1193457775'pad=0,hg19_refFlat_FAM184A:range=chr6:119281268-1193457775'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70chr6:119342570-119362706"	NA	inner
CUST_30068_PI429285431	0.90684986	A	0.917382	A	0.992726259486154	0	lncRNA	31837-1_{1..422}	n334584|U70543|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221117_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221117_03|-0.8348100|-0.3172763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334584|U70543|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221117_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221117_03|-0.8348100|-0.3172763	chr6	  3884438	  3884859	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13669_PI429285431	9.22089	P	8.885412	P	1.26179540312627	0	lncRNA	15306-1_{1..581}	lnc-GRIA3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRIA3-1:2	chrX	121593260	121593840	+	lnc-GRIA3-1	lnc-GRIA3-1:2	XLOC_008061	linc-GRIA3	NA	NA	NA	inter
CUST_35021_PI429285431	8.682993	P	9.289649	P	0.656717133405299	0	lncRNA	36435-1_{1..3000}	n341960|AK125933|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4441|NULL|1.8452400|-0.3019991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341960|AK125933|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4441|NULL|1.8452400|-0.3019991	chr12	 68726298	 68729297	+	NA	NA	NA	NA	MDM1	NA	chr12:68716298-68726161	inter
CUST_36953_PI429285431	0.90745485	A	0.8974123	A	1.00698524905012	0	lncRNA	38105-1_{1..3000}	n345421|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_970|NULL|-1.6102100|-0.3541464	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345421|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_970|NULL|-1.6102100|-0.3541464	chr1	193224753	193227752	+	NA	NA	NA	NA	CDC73	NA	chr1:193214753-193223945	inter
CUST_15113_PI429285431	0.9128852	A	1.3139148	A	0.75731761977493	0	lncRNA	16775-4_{9001..12000}	lnc-KIF13B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIF13B-1:1	chr8	 29158969	 29161968	-	lnc-KIF13B-1	lnc-KIF13B-1:1	XLOC_007035	linc-KIF13B	NA	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0,hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
CUST_4797_PI429285431	2.4386294	A	2.6981943	A	0.835339810188041	0	lncRNA	4741-1_{1..587}	"transcript_id ""ENST00000554810.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554810.1"" | genecode_v17"	chr14	 46175461	 46176047	-	ENSG00000258616.1	ENST00000554810.1	RP11-369C8.1	RP11-369C8.1-001	NA	NA	NA	inter
CUST_40871_PI429285431	7.491811	P	7.3507223	P	1.10273695962934	0	lncRNA	41567-4_{9001..11598}	n410672|NR_037921|lncRNA|Homosapiens||RefGeneNoncode|NR_037921||4.1761400|-0.2266335	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n410672|NR_037921|lncRNA|Homosapiens||RefGeneNoncode|NR_037921||4.1761400|-0.2266335	chr20	  3836445	  3839042	+	NA	NA	NA	NA	MAVS	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr20:3827446-3856770"	NA	inner
CUST_40302_PI429285431	4.5409584	P	4.2638197	P	1.21178915565068	0	lncRNA	41105-2_{3001..3660}	n408308|NR_028596|lncRNA|Homosapiens||RefGeneNoncode|NR_028596||4.0763600|-0.2869226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408308|NR_028596|lncRNA|Homosapiens||RefGeneNoncode|NR_028596||4.0763600|-0.2869226	chr4	148405068	148405727	+	NA	NA	NA	NA	EDNRA	NA	chr4:148392068-148466106	inter
CUST_8564_PI429285431	0.89664364	A	0.89577836	A	1.00059994628822	0	lncRNA	10123-1_{1..3000}	lnc-GPD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPD2-1:1	chr2	157198254	157201253	+	lnc-GPD2-1	lnc-GPD2-1:1	ENSG00000245949	AC074099.1	NR4A2	NA	chr2:157188254-157189287	inter
LNCA_21_P0000990	0.89347756	A	0.9236496	A	0.979303509619324	0	lncRNA	ENST00000452901	NA	BC043539	NA	Hs.551280	XLOC_000269	NA	ENST00000452901	THC2605208	NA	"BROAD Institute lincRNA (XLOC_000269), lincRNA [TCONS_00000242]"	chr1:83562658-83626345	hs|1p31.1	Agilent_HUMAN_G3V2	ENST00000452901	ENST00000452901	chr1	 83562658	 83626345	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19816_PI429285431	0.8958183	A	1.1664362	A	0.828964427919576	0	lncRNA	21473-1_{1..415}	lnc-PARN-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PARN-4:1	chr16	 14293902	 14294316	-	lnc-PARN-4	lnc-PARN-4:1	ENSG00000262529.1	CTA-276F8.2	MKL2	NA	chr16:14283902-14304134	inner
CUST_27504_PI429285431	6.5004663	P	6.675603	P	0.885683593754286	0	lncRNA	29075-1_{1..570}	n324682|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322096|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322096|-1.3275200|-0.2127388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324682|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322096|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322096|-1.3275200|-0.2127388	chr22	 28197929	 28198498	-	NA	NA	NA	NA	MN1	NA	chr22:28187929-28197486	inter
CUST_20363_PI429285431	0.88720006	A	0.8901302	A	0.997971042842352	0	lncRNA	22004-1_{1..531}	lnc-PRR15L-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRR15L-4:1	chr17	 46073317	 46073847	-	lnc-PRR15L-4	lnc-PRR15L-4:1	ENSG00000264701.1	RP11-6N17.10	NA	"hg19_refFlat_ZNF680:range=chr7:63986777-640233325'pad=0,hg19_refFlat_ZNF680:range=chr7:63986777-640233325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CDK5RAP3:range=chr17:46048513-460588685'pad=0,hg19_refFlat_CDK5RAP3:range=chr17:46048513-460588685'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_37753_PI429285431	1.4958932	A	2.3065119	A	0.570137302025495	0	lncRNA	38849-1_{1..228}	n346260|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1810|NULL|-1.3038900|-0.3219461	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346260|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1810|NULL|-1.3038900|-0.3219461	chr16	 21852254	 21852481	-	NA	NA	NA	NA	61E3.4	NA	chr16:21845884-21865025	inter
CUST_4648_PI429285431	0.8862586	A	0.8861864	A	1.00005004647872	0	lncRNA	4594-1_{1..581}	"transcript_id ""ENST00000446691.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446691.2"" | genecode_v17"	chr13	 75126980	 75127560	+	ENSG00000236678.2	ENST00000446691.2	LINC00347	LINC00347-007	NA	NA	NA	inter
CUST_5638_PI429285431	1.13253	A	1.1255414	A	1.00485588014398	0	lncRNA	5566-1_{1..581}	"transcript_id ""ENST00000567851.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567851.1"" | genecode_v17"	chr16	 80099733	 80100313	+	ENSG00000260706.1	ENST00000567851.1	RP11-525K10.1	RP11-525K10.1-001	NA	NA	NA	inter
CUST_1757_PI429285431	0.8932048	A	0.8969739	A	0.997390868677103	0	lncRNA	1743-1_{1..606}	"transcript_id ""ENST00000505575.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505575.1"" | genecode_v17"	chr4	 43135884	 43136489	+	ENSG00000248939.1	ENST00000505575.1	RP11-395F4.1	RP11-395F4.1-001	NA	NA	NA	inter
LNCA_21_P0011304	0.8909783	A	0.8897736	A	1.00083538314671	0	lncRNA	TCONS_l2_00008499	NA	NA	NA	NA	XLOC_l2_004596	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004596), lincRNA [TCONS_l2_00008499]"	chr15:29064295-29064354	hs|15q13.1	Agilent_HUMAN_G3V2	TCONS_l2_00008499	TCONS_l2_00008499	chr15	 29064295	 29064354	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27101_PI429285431	6.0894127	P	6.044553	P	1.031582854487	0	lncRNA	28634-1_{1..3000}	n324212|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000140062|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000140062|-0.9719720|-0.1521182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324212|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000140062|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000140062|-0.9719720|-0.1521182	chr7	 27208173	 27211172	+	NA	NA	NA	NA	HOXA10	"hg19_refFlat_HOXA10:range=chr7:27211518-272139255'pad=0,hg19_refFlat_HOXA10:range=chr7:27211518-272139255'pad=0 3'pad=0 strand=- repeatMasking=none,-110.20chr7:27210210-27219880"	NA	inner
CUST_34380_PI429285431	0.9142577	A	0.9189645	A	0.996742811037532	0	lncRNA	35866-1_{1..3000}	n341249|BC037834|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3717|NULL|-1.0339600|-0.4674352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341249|BC037834|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3717|NULL|-1.0339600|-0.4674352	chr7	 54624662	 54627661	+	NA	NA	NA	NA	VSTM2A	NA	chr7:54614662-54636948	inner
CUST_8966_PI429285431	0.94550174	A	1.3505219	A	0.755225739298624	0	lncRNA	10499-2_{3001..3238}	lnc-SPAM1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPAM1-4:3	chr7	124785769	124786006	+	lnc-SPAM1-4	lnc-SPAM1-4:3	ENSG00000224897	RP11-3B12.1	NA	NA	NA	inter
CUST_7811_PI429285431	0.8983777	A	0.88982844	A	1.00594348831737	0	lncRNA	9435-1_{1..1047}	lnc-C20orf94-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C20orf94-1:1	chr20	 10643460	 10644506	+	lnc-C20orf94-1	lnc-C20orf94-1:1	ENSG00000245640	AL035456.1	JAG1	NA	chr20:10633460-10653711	inner
CUST_33050_PI429285431	2.9745321	A	3.29602	P	0.800244133119093	0	lncRNA	34662-1_{1..2220}	n339740|BC042560|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2186|NULL|-1.0997900|-0.2950197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339740|BC042560|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2186|NULL|-1.0997900|-0.2950197	chr20	 59387061	 59389280	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34539_PI429285431	0.885288	A	0.88086486	A	1.00307059165857	0	lncRNA	36000-1_{1..614}	n341419|AF124367|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3889|NULL|-1.2438700|-0.3498687	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341419|AF124367|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3889|NULL|-1.2438700|-0.3498687	chr8	 11181415	 11182028	-	NA	NA	NA	NA	MTMR9	NA	chr8:11171415-11185655	inner
CUST_14475_PI429285431	0.90421176	A	1.118501	A	0.861970714726826	0	lncRNA	16138-1_{1..710}	lnc-MEIS1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MEIS1-4:1	chr2	 66311644	 66312353	+	lnc-MEIS1-4	lnc-MEIS1-4:1	XLOC_001506	linc-MEIS1-2	NA	NA	NA	inter
CUST_5227_PI429285431	5.027568	P	5.585226	P	0.679404180251647	0	lncRNA	5168-1_{1..527}	"transcript_id ""ENST00000558226.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558226.1"" | genecode_v17"	chr15	 70613915	 70614441	+	ENSG00000259503.1	ENST00000558226.1	RP11-543G18.1	RP11-543G18.1-001	NA	NA	NA	inter
CUST_19196_PI429285431	2.3847466	A	2.5325394	A	0.902630354011644	0	lncRNA	20866-1_{1..1575}	lnc-TDRD7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TDRD7-1:1	chr9	100053653	100055227	+	lnc-TDRD7-1	lnc-TDRD7-1:1	ENSG00000254876.1	RP11-23J9.5	NA	NA	NA	inter
CUST_49842_PI429285431	3.261498	P	3.0133033	P	1.18771994490104	0	lncRNA	53600-1_{1..498}	hg19_lincRNAsTranscripts_TCONS_l2_00027393 range=chr7:65941290-65955046 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027393 range=chr7:65941290-65955046 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 65941290	 65941787	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10669_PI429285431	1.8174405	A	2.539169	A	0.606370511332952	0	lncRNA	12202-1_{1..381}	lnc-CDC25B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDC25B-1:2	chr20	  3792815	  3793195	+	lnc-CDC25B-1	lnc-CDC25B-1:2	XLOC_013445	linc-C20orf29	CDC25B	NA	chr20:3782815-3786762	inter
CUST_20466_PI429285431	1.2291349	A	0.98715043	A	1.18261826979172	0	lncRNA	22110-1_{1..563}	lnc-SAP30-5:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:7	chr4	174462829	174463391	+	lnc-SAP30-5	lnc-SAP30-5:7	ENSG00000237125.3	RP11-471J12.1	NA	NA	NA	inter
CUST_23296_PI429285431	1.077226	A	0.97855175	A	1.07078901955623	0	lncRNA	24867-1_{1..423}	lnc-CLIC5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLIC5-2:1	chr6	 45227949	 45228371	-	lnc-CLIC5-2	lnc-CLIC5-2:1	ENSG00000230554.1	RP11-394I17.1	SUPT3H	NA	chr6:45217949-45238305	inner
CUST_35806_PI429285431	0.9343335	A	0.89308596	A	1.02900325082618	0	lncRNA	37212-1_{1..2563}	n344482|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_30|NULL|-1.2859100|-0.2710829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344482|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_30|NULL|-1.2859100|-0.2710829	chrX	130839635	130842197	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM195A:range=chr16:691992-6981905'pad=0,hg19_refFlat_FAM195A:range=chr16:691992-6981905'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30"	NA	inter
CUST_25346_PI429285431	1.874236	A	2.483797	A	0.65539610312648	0	lncRNA	26877-1_{1..1101}	lnc-SLC6A12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC6A12-2:1	chr12	   274478	   275578	-	lnc-SLC6A12-2	lnc-SLC6A12-2:1	ENSG00000256694.1	RP11-598F7.5	IQSEC3	"hg19_refFlat_IQSEC3:range=chr12:247439-2804875'pad=0,hg19_refFlat_IQSEC3:range=chr12:247439-2804875'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.70;hg19_refFlat_IQSEC3:range=chr12:176049-2841995'pad=0,hg19_refFlat_IQSEC3:range=chr12:176049-2841995'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.70chr12:264478-285487"	NA	inner
LNCA_21_P0011740	6.704119	P	7.123677	P	0.747653648668688	0	lncRNA	TCONS_l2_00013055	NA	NA	NA	NA	XLOC_l2_007025	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007025), lincRNA [TCONS_l2_00013055]"	chr19:35915584-35915525	hs|19q13.12	Agilent_HUMAN_G3V2	TCONS_l2_00013055	TCONS_l2_00013055	chr19	 35915525	 35915584	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29384_PI429285431	1.8693929	A	2.522206	A	0.636038896370009	0	lncRNA	31136-1_{1..532}	n332685|AB073212|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061215|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061215|3.0103000|-0.1662031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332685|AB073212|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061215|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061215|3.0103000|-0.1662031	chr12	120791100	120791631	-	NA	NA	NA	NA	COX6A1	NA	chr12:120809159-120815881	inner
CUST_42706_PI429285431	1.3233368	A	1.4047413	A	0.945137083919831	0	lncRNA	45636-1_{1..72}	ENST00000516667 ncrna:snoRNA chromosome:GRCh37:6:137861537:137861608:1 gene:ENSG00000252476 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516667 ncrna:snoRNA chromosome:GRCh37:6:137861537:137861608:1 gene:ENSG00000252476 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	137861537	137861608	+	ENSG00000252476	ENST00000516667	NA	NA	NA	NA	NA	inter
CUST_48495_PI429285431	0.88769364	A	0.8871855	A	1.0003522778436	0	lncRNA	52348-1_{1..1177}	hg19_lincRNAsTranscripts_TCONS_l2_00001896 range=chr1:243252413-243265070 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001896 range=chr1:243252413-243265070 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	243252413	243253589	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37048_PI429285431	8.734729	P	7.6519527	P	2.11810821634678	0	lncRNA	38185-1_{1..1488}	n345502|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1051|NULL|-1.3139000|-0.3477759	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345502|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1051|NULL|-1.3139000|-0.3477759	chr2	120461351	120462838	+	NA	NA	NA	NA	NA	"hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-62.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70"	NA	inter
CUST_37618_PI429285431	0.90015256	A	1.1030511	A	0.86880328308128	0	lncRNA	38715-2_{3001..3925}	n346096|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1646|NULL|-1.6476000|-0.3452546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346096|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1646|NULL|-1.6476000|-0.3452546	chr10	  4626334	  4627258	-	NA	NA	NA	NA	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.31;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70"	NA	inter
CUST_28834_PI429285431	0.91227305	A	0.9225484	A	0.992902973800344	0	lncRNA	30542-1_{1..337}	n326247|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090180|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090180|-1.1492200|-0.3473189	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326247|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090180|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090180|-1.1492200|-0.3473189	chr1	210465244	210465580	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13177_PI429285431	2.0217755	A	1.7752444	A	1.1863511510376	0	lncRNA	14804-1_{1..284}	lnc-DAZAP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DAZAP2-1:1	chr12	 51568330	 51568613	+	lnc-DAZAP2-1	lnc-DAZAP2-1:1	XLOC_009752	linc-DAZAP2	TFCP2	NA	chr12:51558330-51566926	inter
CUST_38470_PI429285431	3.1864676	A	1.3723514	A	3.51644145945572	0	lncRNA	39489-1_{1..2263}	n382954|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dsg.3||7.5093300|-0.2594887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382954|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dsg.3||7.5093300|-0.2594887	chr16	 29086162	 29088424	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19736_PI429285431	2.7428489	A	2.9216573	A	0.883432369693494	0	lncRNA	21394-1_{1..454}	lnc-AC018816.3.1-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC018816.3.1-8:2	chr3	  6847076	  6847529	-	lnc-AC018816.3.1-8	lnc-AC018816.3.1-8:2	ENSG00000226258.2	GRM7-AS3	NA	NA	NA	inter
CUST_6514_PI429285431	4.6553454	P	4.4608564	P	1.14431877314889	0	lncRNA	6456-1_{1..443}	"transcript_id ""ENST00000602211.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602211.1"" | genecode_v17"	chr19	 38822274	 38822716	+	ENSG00000268913.1	ENST00000602211.1	AC026806.2	AC026806.2-001	KCNK6	NA	chr19:38812274-38819654	inter
CUST_37656_PI429285431	2.225213	A	2.7199001	A	0.709715588608797	0	lncRNA	38749-1_{1..1694}	n346137|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1687|NULL|-1.5751200|-0.2200918	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346137|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1687|NULL|-1.5751200|-0.2200918	chr6	 27327619	 27329312	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32413_PI429285431	0.90399456	A	0.8929943	A	1.00765394200813	0	lncRNA	34089-1_{1..2825}	n339007|AK022236|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1436|NULL|-1.2090200|-0.3745089	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339007|AK022236|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1436|NULL|-1.2090200|-0.3745089	chr2	172402328	172405152	+	NA	NA	NA	NA	CYBRD1	NA	chr2:172392328-172414643	inner
CUST_9216_PI429285431	1.6082563	A	1.9686884	A	0.778931247881099	0	lncRNA	10727-1_{1..2388}	lnc-C5orf39-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C5orf39-1:9	chr5	 43017176	 43019563	-	lnc-C5orf39-1	lnc-C5orf39-1:9	ENSG00000177738	CTD-2201E18.3	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-95.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10"	NA	inter
CUST_38669_PI429285431	5.420223	P	5.51832	P	0.934264529237462	0	lncRNA	39669-2_{3001..3838}	n383959|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yiy.3||1.0274200|-0.3954883	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383959|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yiy.3||1.0274200|-0.3954883	chr21	 14413486	 14414323	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80"	NA	inter
CUST_22427_PI429285431	2.665897	A	3.4650745	P	0.574676715108437	0	lncRNA	24015-1_{1..428}	lnc-ROCK1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ROCK1-2:1	chr18	 18821238	 18821665	-	lnc-ROCK1-2	lnc-ROCK1-2:1	ENSG00000265984.1	RP11-699A5.2	GREB1L	NA	chr18:18822203-18831332	inter
CUST_35261_PI429285431	8.941108	P	7.637497	P	2.46845954280179	0	lncRNA	36662-1_{1..1651}	n342268|M55630|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4758|NULL|-1.2102500|-0.3350880	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n342268|M55630|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4758|NULL|-1.2102500|-0.3350880	chr22	 25160467	 25162117	+	NA	NA	NA	NA	PIWIL3	NA	chr22:25150467-25170683	inner
CUST_41395_PI429285431	1.6763039	A	1.6616498	A	1.01020921008269	0	lncRNA	42507-1_{1..79}	ENST00000390137 ncrna:miRNA chromosome:GRCh37:17:79099677:79099755:1 gene:ENSG00000211563 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390137 ncrna:miRNA chromosome:GRCh37:17:79099677:79099755:1 gene:ENSG00000211563 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 79099677	 79099755	+	ENSG00000211563	ENST00000390137	NA	NA	BAIAP2	NA	chr17:79089677-79091232	inner
CUST_7648_PI429285431	0.90038	A	0.9025416	A	0.998502814955966	0	lncRNA	9280-1_{1..2709}	lnc-SWAP70-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SWAP70-1:1	chr11	  9831807	  9834515	+	lnc-SWAP70-1	lnc-SWAP70-1:1	ENSG00000246273	RP11-540A21.3	SBF2	"hg19_refFlat_SBF2:range=chr11:9801965-103156165'pad=0,hg19_refFlat_SBF2:range=chr11:9801965-103156165'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50chr11:9821807-9842866"	NA	inner
LNCA_21_P0005922	1.5734814	A	1.5048654	A	1.04871015679581	0	lncRNA	TCONS_00015214	NA	NA	NA	NA	XLOC_006709	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006709), lincRNA [TCONS_00015214]"	chr8:10714038-10714097	hs|8p23.1	Agilent_HUMAN_G3V2	TCONS_00015214	TCONS_00015214	chr8	 10714038	 10714097	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5707_PI429285431	0.8987102	A	0.91121423	A	0.991370318181664	0	lncRNA	5631-1_{1..560}	"transcript_id ""ENST00000574483.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000574483.1"" | genecode_v17"	chr17	  1923246	  1923805	-	ENSG00000262869.1	ENST00000574483.1	CTD-2545H1.1	CTD-2545H1.1-001	RTN4RL1	NA	chr17:1913246-1928178	inner
CUST_30595_PI429285431	2.242842	A	3.137142	P	0.538008175104241	0	lncRNA	32377-1_{1..375}	n335889|X64158|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322657|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322657|2.5012000|-0.0816055	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335889|X64158|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322657|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322657|2.5012000|-0.0816055	chr14	106329408	106329782	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43111_PI429285431	0.89959	A	0.9083681	A	0.99393395791157	0	lncRNA	47873-1_{1..178}	ENST00000410991 ncrna:snRNA chromosome:GRCh37:2:115177702:115177879:1 gene:ENSG00000222923 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410991 ncrna:snRNA chromosome:GRCh37:2:115177702:115177879:1 gene:ENSG00000222923 gene_biotype:snRNA transcript_biotype:snRNA	chr2	115177702	115177879	+	ENSG00000222923	ENST00000410991	NA	NA	NA	NA	NA	inter
CUST_17901_PI429285431	10.166751	P	10.124209	P	1.02992693965855	0	lncRNA	19633-2_{3001..4723}	lnc-TRNP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRNP1-1:2	chr1	 27389505	 27391227	+	lnc-TRNP1-1	lnc-TRNP1-1:2	XLOC_000105	linc-WDTC1	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-24.70;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-28.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.81;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.22;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40"	NA	inter
CUST_2124_PI429285431	0.89814353	A	0.91674113	A	0.987191857436042	0	lncRNA	2115-1_{1..403}	"transcript_id ""ENST00000507876.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507876.1"" | genecode_v17"	chr5	 29383211	 29383613	-	ENSG00000248391.1	ENST00000507876.1	CTD-2010I22.2	CTD-2010I22.2-002	NA	NA	NA	inter
CUST_9255_PI429285431	10.913801	P	10.681095	P	1.17503684881662	0	lncRNA	10764-1_{1..821}	lnc-TRPV2-1:34	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRPV2-1:34	chr17	 16344682	 16345502	+	lnc-TRPV2-1	lnc-TRPV2-1:34	ENSG00000175061	NCRNA00188	C17orf76	NA	chr17:16345328-16355056	inter
CUST_46884_PI429285431	4.716598	P	4.8978033	P	0.881965849777993	0	lncRNA	51008-1_{1..1420}	"gi|336285263|ref|NR_038458.1| Homo sapiens TOB1 antisense RNA 1 (TOB1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336285263|ref|NR_038458.1| Homo sapiens TOB1 antisense RNA 1 (TOB1-AS1), non-coding RNA"	Chr17	 48944040	 48945459	+	400604	NR_038458.1	NA	NA	NA	NA	NA	inter
CUST_43550_PI429285431	5.0144744	P	5.178165	P	0.892738407389247	0	lncRNA	48327-1_{1..3000}	"gi|399154177|ref|NR_073071.1| Homo sapiens family with sequence similarity 40, member A (FAM40A), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|399154177|ref|NR_073071.1| Homo sapiens family with sequence similarity 40, member A (FAM40A), transcript variant 3, non-coding RNA"	Chr1	110577223	110580222	+	85369	NR_073071.1	NA	NA	NA	NA	NA	inter
CUST_1182_PI429285431	5.4288516	P	5.632187	P	0.868540242083324	0	lncRNA	1172-1_{1..1771}	"transcript_id ""ENST00000435411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435411.1"" | genecode_v17"	chr2	181988564	181990334	+	ENSG00000234663.1	ENST00000435411.1	AC104820.2	AC104820.2-001	NA	NA	NA	inter
CUST_7863_PI429285431	1.9032006	A	2.8292294	A	0.526305070811823	0	lncRNA	9485-1_{1..2685}	lnc-RP11-1105G2.3.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-1105G2.3.1-4:1	chr12	 94370026	 94372710	-	lnc-RP11-1105G2.3.1-4	lnc-RP11-1105G2.3.1-4:1	ENSG00000251157	ENST00000505974	NA	NA	NA	inter
LNCA_21_P0012423	2.85539	A	3.2874944	P	0.741179867801526	0	lncRNA	TCONS_l2_00019078	NA	NA	NA	NA	XLOC_l2_010056	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010056), lincRNA [TCONS_l2_00019078]"	chr3:194470625-194470684	hs|3q29	Agilent_HUMAN_G3V2	TCONS_l2_00019078	TCONS_l2_00019078	chr3	194470625	194470684	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31788_PI429285431	13.648336	P	14.558924	P	0.53196823245614	0	lncRNA	33527-1_{1..1113}	n338329|AF143887|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|723|NULL|-1.0191700|-0.3555354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338329|AF143887|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|723|NULL|-1.0191700|-0.3555354	chr1	160654220	160655332	+	NA	NA	NA	NA	CD48	"hg19_refFlat_CD48:range=chr1:160648842-1606815535'pad=0,hg19_refFlat_CD48:range=chr1:160648842-1606815535'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CD48:range=chr1:160650885-1606815535'pad=0,hg19_refFlat_CD48:range=chr1:160650885-1606815535'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr1:160648536-160665316"	NA	inner
LNCA_21_P0009725	2.4040725	A	3.4581676	P	0.4815991997647	0	lncRNA	TCONS_00027059	NA	NA	NA	NA	XLOC_013100	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013100), lincRNA [TCONS_00027059]"	chr19:46718629-46718688	hs|19q13.32	Agilent_HUMAN_G3V2	TCONS_00027059	TCONS_00027059	chr19	 46718629	 46718688	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45303_PI429285431	0.91911507	A	0.9290483	A	0.993138458248647	0	lncRNA	49747-1_{1..3000}	"gi|408684415|ref|NR_073201.1| Homo sapiens DENN/MADD domain containing 4C (DENND4C), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|408684415|ref|NR_073201.1| Homo sapiens DENN/MADD domain containing 4C (DENND4C), transcript variant 2, non-coding RNA"	Chr9	 19230763	 19233762	+	55667	NR_073201.2	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_32378_PI429285431	1.535364	A	1.8309116	A	0.814763016226684	0	lncRNA	34055-1_{1..1389}	n338969|AF113692|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1397|NULL|-1.3028600|-0.3842340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338969|AF113692|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1397|NULL|-1.3028600|-0.3842340	chr19	 57804450	 57805838	-	NA	NA	NA	NA	ZNF460	NA	chr19:57794450-57805436	inner
CUST_44140_PI429285431	7.5104666	P	7.7074337	P	0.872382599829768	0	lncRNA	48803-1_{1..3000}	"gi|195972906|ref|NR_024071.1| Homo sapiens phospholipase C, delta 1 (PLCD1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|195972906|ref|NR_024071.1| Homo sapiens phospholipase C, delta 1 (PLCD1), transcript variant 3, non-coding RNA"	Chr3	 38048987	 38051986	-	5333	NR_024071.1	NA	NA	NA	NA	NA	inter
CUST_7930_PI429285431	2.313799	A	2.205961	A	1.07761213335207	0	lncRNA	9542-1_{1..1808}	lnc-C3orf23-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C3orf23-2:1	chr3	 44485398	 44487205	+	lnc-C3orf23-2	lnc-C3orf23-2:1	ENSG00000245865	AC134943.1	ZNF445	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20chr3:44481262-44496946"	NA	inner
CUST_42272_PI429285431	3.6072729	P	4.1441536	P	0.68925957069983	0	lncRNA	44882-1_{1..163}	ENST00000516722 ncrna:snoRNA chromosome:GRCh37:2:3628160:3628322:1 gene:ENSG00000252531 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516722 ncrna:snoRNA chromosome:GRCh37:2:3628160:3628322:1 gene:ENSG00000252531 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	  3628160	  3628322	+	ENSG00000252531	ENST00000516722	NA	NA	RPS7	NA	chr2:3622853-3628509	inner
CUST_8900_PI429285431	2.063379	A	1.1792219	A	1.84568595742509	0	lncRNA	10435-1_{1..2444}	lnc-ALDH9A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALDH9A1-1:1	chr1	165617682	165620125	-	lnc-ALDH9A1-1	lnc-ALDH9A1-1:1	ENSG00000250899	ENST00000513358	MGST3	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00chr1:165607682-165625373"	NA	inner
CUST_1339_PI429285431	0.88977593	A	0.89280295	A	0.997904029242308	0	lncRNA	1328-1_{1..1210}	"transcript_id ""ENST00000603982.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603982.1"" | genecode_v17"	chr3	 37258270	 37259479	+	ENSG00000271653.1	ENST00000603982.1	RP11-259K5.1	RP11-259K5.1-001	NA	NA	NA	inter
CUST_19832_PI429285431	5.245654	P	5.7762375	P	0.692274685974381	0	lncRNA	21489-1_{1..483}	lnc-CD226-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CD226-1:1	chr18	 67392046	 67392528	-	lnc-CD226-1	lnc-CD226-1:1	ENSG00000266840.1	RP11-543H23.2	DOK6	NA	chr18:67382046-67402211	inner
LNCA_21_P0002860	0.8975604	A	0.8996499	A	0.998552717291443	0	lncRNA	ENST00000465795	NA	NA	NA	NA	XLOC_003166	NA	ENST00000465795	THC2713992	NA	"BROAD Institute lincRNA (XLOC_003166), lincRNA [TCONS_00005789]"	chr3:78088020-78087961	hs|3p12.3	Agilent_HUMAN_G3V2	ENST00000465795	ENST00000465795	chr3	 78087961	 78088020	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48310_PI429285431	3.6796644	P	2.4786253	A	2.29905200425833	0	lncRNA	52168-1_{1..213}	hg19_lincRNAsTranscripts_TCONS_l2_00001061 range=chr1:17013837-17015231 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001061 range=chr1:17013837-17015231 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 17013837	 17014049	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42031_PI429285431	1.0799987	A	1.1152744	A	0.975845258266248	0	lncRNA	43905-1_{1..97}	ENST00000385267 ncrna:miRNA chromosome:GRCh37:19:52785050:52785146:1 gene:ENSG00000208002 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385267 ncrna:miRNA chromosome:GRCh37:19:52785050:52785146:1 gene:ENSG00000208002 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 52785050	 52785146	+	ENSG00000208002	ENST00000385267	NA	NA	ZNF766	NA	chr19:52775050-52795146	inner
CUST_23905_PI429285431	3.6358776	P	4.2253265	P	0.664596730137817	0	lncRNA	25462-1_{1..583}	lnc-AC005323.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC005323.1.1-1:1	chr17	 10440967	 10441549	+	lnc-AC005323.1.1-1	lnc-AC005323.1.1-1:1	ENSG00000214970.2	CTC-297N7.7	MYH2	"hg19_refFlat_MYH4:range=chr17:10346692-103700625'pad=0,hg19_refFlat_MYH4:range=chr17:10346692-103700625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_MYH3:range=chr17:10531970-105583815'pad=0,hg19_refFlat_MYH3:range=chr17:10531970-105583815'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_MYH1:range=chr17:10395733-104199595'pad=0,hg19_refFlat_MYH1:range=chr17:10395733-104199595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MYH7B:range=chr20:33563298-335899915'pad=0,hg19_refFlat_MYH7B:range=chr20:33563298-335899915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MYH7:range=chr14:23882063-239029415'pad=0,hg19_refFlat_MYH7:range=chr14:23882063-239029415'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_MYH6:range=chr14:23851249-238764325'pad=0,hg19_refFlat_MYH6:range=chr14:23851249-238764325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MYH8:range=chr17:10293771-103235445'pad=0,hg19_refFlat_MYH8:range=chr17:10293771-103235445'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_MYH2:range=chr17:10424597-104512375'pad=0,hg19_refFlat_MYH2:range=chr17:10424597-104512375'pad=0 3'pad=0 strand=- repeatMasking=none,-95.20;hg19_refFlat_MYH13:range=chr17:10204268-102678475'pad=0,hg19_refFlat_MYH13:range=chr17:10204268-102678475'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90chr17:10430967-10451179"	NA	inner
CUST_35959_PI429285431	12.43128	P	12.333836	P	1.0698762995168	0	lncRNA	37311-2_{3001..4079}	n344586|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_134|NULL|-1.5506700|-0.3116415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n344586|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_134|NULL|-1.5506700|-0.3116415	chr10	  6783396	  6784474	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35186_PI429285431	2.1709921	A	3.0684247	P	0.536841236891495	0	lncRNA	36587-1_{1..1751}	n342164|BC019245|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4651|NULL|-1.2080000|-0.3114501	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342164|BC019245|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4651|NULL|-1.2080000|-0.3114501	chr6	161984666	161986416	-	NA	NA	NA	NA	PARK2	NA	chr6:161974666-161996399	inner
CUST_10469_PI429285431	0.9037659	A	1.5183035	A	0.653139198465408	0	lncRNA	11995-1_{1..500}	lnc-ZFP42-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP42-2:5	chr4	188626118	188626617	+	lnc-ZFP42-2	lnc-ZFP42-2:5	XLOC_003829	linc-ZFP42-3	NA	NA	NA	inter
CUST_12973_PI429285431	4.134358	P	3.5013413	P	1.55080436401584	0	lncRNA	14599-1_{1..3000}	lnc-CAPZA3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CAPZA3-3:1	chr12	 18950335	 18953334	+	lnc-CAPZA3-3	lnc-CAPZA3-3:1	XLOC_009680	linc-PLEKHA5-1	NA	NA	NA	inter
CUST_11424_PI429285431	1.2809174	A	0.9072807	A	1.29561466218564	0	lncRNA	12992-1_{1..1096}	lnc-FLRT2-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FLRT2-2:9	chr14	 86595840	 86596935	+	lnc-FLRT2-2	lnc-FLRT2-2:9	XLOC_010891	linc-GPR65-6	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90"	NA	inter
CUST_4271_PI429285431	0.901195	A	1.4038599	A	0.705801841815397	0	lncRNA	4227-1_{1..754}	"transcript_id ""ENST00000551732.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551732.1"" | genecode_v17"	chr12	 54555849	 54556602	-	ENSG00000257534.1	ENST00000551732.1	RP11-834C11.10	RP11-834C11.10-001	NA	NA	NA	inter
CUST_5457_PI429285431	6.5409503	P	7.327422	P	0.579760239287829	0	lncRNA	5391-1_{1..438}	"transcript_id ""ENST00000562842.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562842.1"" | genecode_v17"	chr16	 23464328	 23464765	+	ENSG00000260136.1	ENST00000562842.1	CTD-2270L9.4	CTD-2270L9.4-002	COG7	NA	chr16:23454328-23464512	inner
CUST_5338_PI429285431	7.581797	P	7.8554544	P	0.827219786842953	0	lncRNA	5276-1_{1..862}	"transcript_id ""ENST00000554837.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554837.1"" | genecode_v17"	chr15	 95976324	 95977185	+	ENSG00000259134.1	ENST00000554837.1	RP11-398J10.1	RP11-398J10.1-002	NA	NA	NA	inter
CUST_19171_PI429285431	1.8785123	A	1.8969538	A	0.987298677645265	0	lncRNA	20840-1_{1..794}	lnc-WDPCP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDPCP-1:1	chr2	 63275636	 63276429	-	lnc-WDPCP-1	lnc-WDPCP-1:1	ENSG00000231609.1	AC009501.4	EHBP1	"hg19_refFlat_EHBP1:range=chr2:62934327-632726355'pad=0,hg19_refFlat_EHBP1:range=chr2:62934327-632726355'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80chr2:63265636-63273622"	NA	inter
CUST_9789_PI429285431	4.2751184	P	4.020355	P	1.19314005366001	0	lncRNA	11305-1_{1..1832}	lnc-BANP-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BANP-1:5	chr16	 88219425	 88221256	+	lnc-BANP-1	lnc-BANP-1:5	XLOC_011826	linc-ZNF469-3	NA	NA	NA	inter
CUST_50878_PI429285431	1.4298525	A	1.9462341	A	0.699123095381497	0	lncRNA	54521-1_{1..1009}	hg19_lincRNAsTranscripts_TCONS_l2_00005279 range=chr11:133778509-133783535 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005279 range=chr11:133778509-133783535 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	133778509	133779517	-	NA	NA	NA	NA	IGSF9B	NA	chr11:133785185-133793535	inter
CUST_11948_PI429285431	0.90666866	A	1.1339169	A	0.854262737939326	0	lncRNA	13528-1_{1..943}	lnc-KY-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KY-1:1	chr3	134299345	134300287	-	lnc-KY-1	lnc-KY-1:1	XLOC_003262	linc-ANAPC13	CEP63	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80chr3:134289345-134293855"	NA	inter
CUST_8775_PI429285431	0.88720226	A	0.8861727	A	1.00071389131041	0	lncRNA	10317-2_{3001..5395}	lnc-RPIA-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPIA-1:2	chr2	 89108630	 89111024	+	lnc-RPIA-1	lnc-RPIA-1:2	ENSG00000230006	ANKRD36BP2	NA	NA	NA	inter
CUST_31538_PI429285431	4.541773	P	4.655418	P	0.924249972115989	0	lncRNA	33297-1_{1..1440}	n338026|BC010081|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|413|NULL|-1.0351500|-0.1976197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338026|BC010081|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|413|NULL|-1.0351500|-0.1976197	chr15	 75660495	 75661934	+	NA	NA	NA	NA	SIN3A	"hg19_refFlat_MAN2C1:range=chr15:75648247-756609245'pad=0,hg19_refFlat_MAN2C1:range=chr15:75648247-756609245'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30chr15:75661720-75671920"	NA	inner
LNCA_21_P0014147	7.65086	P	8.028038	P	0.76994217275771	0	lncRNA	XR_108598	XR_108598	XR_108598	NA	Hs.519298	LOC100287592	uncharacterized LOC100287592	ENST00000506534	THC2616760	NA	"PREDICTED: Homo sapiens hypothetical LOC100287592 (LOC100287592), miscRNA [XR_108598]"	chr5:50265110-50265051	hs|5q11.1	Agilent_HUMAN_G3V2	XR_108598	XR_108598	chr5	 50265051	 50265110	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012192	2.5300155	A	0.88942415	A	3.11793607563116	0	lncRNA	TCONS_l2_00017177	NA	NA	NA	NA	XLOC_l2_009172	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009172), lincRNA [TCONS_l2_00017177]"	chr21:26757889-26757830	hs|21q21.2	Agilent_HUMAN_G3V2	TCONS_l2_00017177	TCONS_l2_00017177	chr21	 26757830	 26757889	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001267	2.6183836	A	3.1704059	P	0.682063374580393	0	lncRNA	ENST00000475078	NA	NA	NA	NA	C1orf144	chromosome 1 open reading frame 144	ENST00000475078	THC2591979	NA	"BROAD Institute lincRNA (XLOC_000062), lincRNA [TCONS_00000847]"	chr1:16679216-16679275	hs|1p36.13	Agilent_HUMAN_G3V2	ENST00000475078	ENST00000475078	chr1	 16679216	 16679275	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10896_PI429285431	0.89466935	A	0.89907765	A	0.996949062880567	0	lncRNA	12437-1_{1..1173}	lnc-LTBP3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LTBP3-3:1	chr11	 65256355	 65257527	-	lnc-LTBP3-3	lnc-LTBP3-3:1	XLOC_009473	linc-SLC25A45-4	NA	NA	NA	inter
CUST_19264_PI429285431	7.352177	P	6.951356	P	1.32025902189888	0	lncRNA	20932-1_{1..839}	lnc-PDLIM4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDLIM4-1:2	chr5	131527954	131528792	+	lnc-PDLIM4-1	lnc-PDLIM4-1:2	ENSG00000237714.1	P4HA2-AS1	P4HA2	NA	chr5:131528303-131538501	inner
CUST_29170_PI429285431	4.52803	P	4.709577	P	0.881756982320966	0	lncRNA	30914-1_{1..607}	n326682|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000008191|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000008191|-1.0188600|-0.1267141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326682|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000008191|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000008191|-1.0188600|-0.1267141	chr1	 21614977	 21615583	+	NA	NA	NA	NA	ECE1	NA	chr1:21604977-21626572	inner
CUST_47156_PI429285431	8.227416	P	8.595194	P	0.774975173936674	0	lncRNA	51235-1_{1..986}	"gi|242117894|ref|NR_027882.1| Homo sapiens BCL2-associated X protein (BAX), transcript variant epsilon, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|242117894|ref|NR_027882.1| Homo sapiens BCL2-associated X protein (BAX), transcript variant epsilon, non-coding RNA"	Chr19	 49458117	 49459102	+	581	NR_027882.1	NA	NA	NA	NA	NA	inter
CUST_43559_PI429285431	2.0170887	A	0.9238671	A	2.13349924499996	0	lncRNA	48334-1_{1..3000}	"gi|387942382|ref|NR_049741.1| Homo sapiens suppressor of IKBKE 1 (SIKE1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387942382|ref|NR_049741.1| Homo sapiens suppressor of IKBKE 1 (SIKE1), transcript variant 3, non-coding RNA"	Chr1	115312100	115315099	-	80143	NR_049741.1	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70"	NA	inter
CUST_12947_PI429285431	1.2597615	A	0.88343114	A	1.29803596770348	0	lncRNA	14575-1_{1..1112}	lnc-MUTYH-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MUTYH-1:2	chr1	 45770198	 45771309	-	lnc-MUTYH-1	lnc-MUTYH-1:2	XLOC_000816	linc-ZSWIM5	NA	NA	NA	inter
CUST_38471_PI429285431	0.89128345	A	0.8850928	A	1.00430025125197	0	lncRNA	39490-1_{1..1840}	n382955|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dsh.1||-0.2261480|-0.2267706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382955|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dsh.1||-0.2261480|-0.2267706	chr16	 29114977	 29116816	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_RRN3:range=chr16:15155601-151880905'pad=0,hg19_refFlat_RRN3:range=chr16:15155601-151880905'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70"	NA	inter
CUST_40162_PI429285431	3.0358758	P	1.9313005	A	2.15035566687402	0	lncRNA	40998-1_{1..2395}	n407859|NR_027415|lncRNA|Homosapiens||RefGeneNoncode|NR_027415||5.0252500|-0.2807369	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407859|NR_027415|lncRNA|Homosapiens||RefGeneNoncode|NR_027415||5.0252500|-0.2807369	chr13	 52706778	 52709172	-	NA	NA	NA	NA	NEK5	NA	chr13:52696778-52703214	inner
CUST_24171_PI429285431	0.90236175	A	1.2458539	A	0.788131271092999	0	lncRNA	25722-1_{1..537}	lnc-PHGDH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PHGDH-1:1	chr1	120144910	120145446	+	lnc-PHGDH-1	lnc-PHGDH-1:1	ENSG00000242959.1	RP4-599G15.3	ZNF697	NA	chr1:120143876-120155118	inter
CUST_49215_PI429285431	0.90545195	A	1.1895111	A	0.821277027986378	0	lncRNA	53035-1_{1..350}	hg19_lincRNAsTranscripts_TCONS_l2_00021411 range=chr4:175041122-175041693 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021411 range=chr4:175041122-175041693 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	175041122	175041471	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37535_PI429285431	2.8693118	A	3.1588645	A	0.818155684099454	0	lncRNA	38639-1_{1..1371}	n346010|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1560|NULL|-1.3045600|-0.2910539	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346010|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1560|NULL|-1.3045600|-0.2910539	chr2	128213021	128214391	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48463_PI429285431	7.8428802	P	7.376144	P	1.38197948539846	0	lncRNA	52315-1_{1..240}	hg19_lincRNAsTranscripts_TCONS_l2_00000843 range=chr1:223010334-223010701 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000843 range=chr1:223010334-223010701 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	223010334	223010573	+	NA	NA	NA	NA	DISP1	NA	chr1:223000334-223020701	inner
CUST_46832_PI429285431	8.376115	P	8.150026	P	1.16965981825639	0	lncRNA	50970-2_{3001..3342}	"gi|388556517|ref|NR_049772.1| Homo sapiens proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) (PSME3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388556517|ref|NR_049772.1| Homo sapiens proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) (PSME3), transcript variant 4, non-coding RNA"	Chr17	 40988159	 40988500	+	10197	NR_049772.1	NA	NA	NA	NA	NA	inter
CUST_52216_PI429285431	3.7806137	P	3.5292685	P	1.19031647450351	0	lncRNA	55731-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_00030000 range=chr6_mann_hap4:4301449-4305045 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00030000 range=chr6_mann_hap4:4301449-4305045 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6_mann_hap4	  4301449	  4304448	+	NA	NA	NA	NA	NA	"hg19_refFlat_PPP1R2:range=chr3:195243694-1952698485'pad=0,hg19_refFlat_PPP1R2:range=chr3:195243694-1952698485'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90"	NA	Unknown
CUST_6785_PI429285431	0.9050933	A	0.9130516	A	0.994498913490508	0	lncRNA	6733-1_{1..377}	"transcript_id ""ENST00000430064.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430064.1"" | genecode_v17"	chr21	 18235195	 18235571	-	ENSG00000232886.1	ENST00000430064.1	AF212831.2	AF212831.2-001	NA	NA	NA	inter
CUST_11259_PI429285431	1.0084103	A	1.3150502	A	0.808522652735151	0	lncRNA	12818-1_{1..601}	lnc-SLCO3A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLCO3A1-1:2	chr15	 92180029	 92180629	+	lnc-SLCO3A1-1	lnc-SLCO3A1-1:2	XLOC_011354	linc-SLCO3A1-1	NA	NA	NA	inter
CUST_39957_PI429285431	13.420964	P	13.347215	P	1.05244803393199	0	lncRNA	40829-1_{1..3000}	n407001|NR_024498|lncRNA|Homosapiens||RefGeneNoncode|NR_024498||-0.0763735|-0.1678858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407001|NR_024498|lncRNA|Homosapiens||RefGeneNoncode|NR_024498||-0.0763735|-0.1678858	chr1	 26146444	 26149443	-	NA	NA	NA	NA	FAM54B	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr1:26146397-26159433"	NA	inner
CUST_45541_PI429285431	5.5970993	P	4.2229185	P	2.59220676848274	0	lncRNA	49944-1_{1..3000}	"gi|374081859|ref|NR_046172.1| Homo sapiens RAB18, member RAS oncogene family (RAB18), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|374081859|ref|NR_046172.1| Homo sapiens RAB18, member RAS oncogene family (RAB18), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NR_046172.1	NA	NA	NA	NA	NA	Unknown
CUST_40977_PI429285431	11.781607	P	11.847306	P	0.95548226482926	0	lncRNA	41648-1_{1..1600}	n411091|NR_038915|lncRNA|Homosapiens||RefGeneNoncode|NR_038915||0.0087055|-0.1352353	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n411091|NR_038915|lncRNA|Homosapiens||RefGeneNoncode|NR_038915||0.0087055|-0.1352353	chr5	176864889	176866488	-	NA	NA	NA	NA	PRR7	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40chr5:176873796-176883287"	NA	inner
CUST_26189_PI429285431	0.9178766	A	0.9028449	A	1.0104736491435	0	lncRNA	27700-1_{1..557}	lnc-SLC3A2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC3A2-1:2	chr11	 62601035	 62601591	+	lnc-SLC3A2-1	lnc-SLC3A2-1:2	ENSG00000256690.1	RP11-727F15.9	WDR74	"hg19_refFlat_WDR74:range=chr11:62600424-626070425'pad=0,hg19_refFlat_WDR74:range=chr11:62600424-626070425'pad=0 3'pad=0 strand=- repeatMasking=none,-97.10chr11:62600383-62607628"	NA	inner
CUST_6506_PI429285431	1.0039554	A	0.9069315	A	1.06956480638182	0	lncRNA	6448-1_{1..562}	"transcript_id ""ENST00000592103.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592103.1"" | genecode_v17"	chr19	 38308125	 38308686	+	ENSG00000267640.1	ENST00000592103.1	CTD-2554C21.2	CTD-2554C21.2-003	NA	NA	NA	inter
CUST_40021_PI429285431	3.0466778	P	1.2403423	A	3.49752774022642	0	lncRNA	40880-2_{3001..6000}	n407180|NR_026641|lncRNA|Homosapiens||RefGeneNoncode|NR_026641||9.5800600|-0.2441475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407180|NR_026641|lncRNA|Homosapiens||RefGeneNoncode|NR_026641||9.5800600|-0.2441475	chr17	 59945727	 59948726	-	NA	NA	NA	NA	BRIP1	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50chr17:59932727-59940920"	NA	inter
LNCA_21_P0011653	1.3892896	A	2.6192234	A	0.426337008481502	0	lncRNA	TCONS_l2_00011955	NA	NA	NA	NA	XLOC_l2_006399	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006399), lincRNA [TCONS_l2_00011955]"	chr18:10979310-10979251	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_l2_00011955	TCONS_l2_00011955	chr18	 10979251	 10979310	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14001_PI429285431	4.5437107	P	4.924892	P	0.767808640131394	0	lncRNA	15646-2_{3001..3112}	lnc-ZNF572-1:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF572-1:15	chr8	125966058	125966169	+	lnc-ZNF572-1	lnc-ZNF572-1:15	XLOC_006916	linc-ZNF572	NA	NA	NA	inter
LNCA_21_P0008949	0.90203243	A	0.9239799	A	0.984902303541531	0	lncRNA	TCONS_00024420	NA	NA	NA	NA	XLOC_011728	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011728), lincRNA [TCONS_00024420]"	chr16:53422865-53422924	hs|16q12.2	Agilent_HUMAN_G3V2	TCONS_00024420	TCONS_00024420	chr16	 53422865	 53422924	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47130_PI429285431	10.99327	P	10.714074	P	1.21351841383615	0	lncRNA	51211-1_{1..1719}	"gi|268832156|ref|NR_030765.1| Homo sapiens ATP5S-like (ATP5SL), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|268832156|ref|NR_030765.1| Homo sapiens ATP5S-like (ATP5SL), transcript variant 7, non-coding RNA"	NW_004775434.1	      357	     2075	-	55101	NR_030765.1	NA	NA	NA	NA	NA	Unknown
CUST_43433_PI429285431	7.2364388	P	6.942371	P	1.22609247937979	0	lncRNA	48241-1_{1..920}	"gi|342837725|ref|NR_040733.1| Homo sapiens chromosome 1 open reading frame 50 (C1orf50), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|342837725|ref|NR_040733.1| Homo sapiens chromosome 1 open reading frame 50 (C1orf50), transcript variant 2, non-coding RNA"	Chr1	 43232916	 43233835	+	79078	NR_040733.1	NA	NA	NA	NA	NA	inter
CUST_39744_PI429285431	5.969384	P	6.2023654	P	0.850874699369845	0	lncRNA	40668-1_{1..3000}	n405870|NR_003092|lncRNA|Homosapiens||RefGeneNoncode|NR_003092||3.6486300|-0.2794764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405870|NR_003092|lncRNA|Homosapiens||RefGeneNoncode|NR_003092||3.6486300|-0.2794764	chr2	 11584500	 11587499	-	NA	NA	NA	NA	E2F6	NA	chr2:11584501-11606297	inner
CUST_50675_PI429285431	1.5172209	A	0.90223277	A	1.53154539601229	0	lncRNA	54349-1_{1..555}	hg19_lincRNAsTranscripts_TCONS_l2_00003529 range=chr10:45731338-45738615 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003529 range=chr10:45731338-45738615 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 45731338	 45731892	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35260_PI429285431	7.9472623	P	7.6910806	P	1.19431359524072	0	lncRNA	36661-1_{1..2527}	n342266|AK026966|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4756|NULL|-1.2302400|-0.3511155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342266|AK026966|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4756|NULL|-1.2302400|-0.3511155	chr1	 65695310	 65697836	+	NA	NA	NA	NA	AK4	NA	chr1:65685310-65697828	inner
CUST_9071_PI429285431	0.8977934	A	0.90593934	A	0.994369575247801	0	lncRNA	10594-1_{1..1025}	lnc-PERP-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PERP-3:2	chr6	138146912	138147936	-	lnc-PERP-3	lnc-PERP-3:2	ENSG00000235842	XLOC_005849	NA	NA	NA	inter
CUST_5062_PI429285431	1.1738645	A	0.92543614	A	1.18791232451666	0	lncRNA	5002-1_{1..854}	"transcript_id ""ENST00000555282.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555282.1"" | genecode_v17"	chr14	104689951	104690804	+	ENSG00000258913.1	ENST00000555282.1	RP11-260M19.2	RP11-260M19.2-003	NA	NA	NA	inter
CUST_13358_PI429285431	2.1606133	A	2.9122093	A	0.593946133354404	0	lncRNA	14995-1_{1..499}	lnc-PREX1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PREX1-7:1	chr20	 46860228	 46860726	-	lnc-PREX1-7	lnc-PREX1-7:1	XLOC_013774	linc-SULF2-7	NA	NA	NA	inter
CUST_15877_PI429285431	1.3270725	A	2.1843178	A	0.552005558646889	0	lncRNA	17568-1_{1..487}	lnc-C5orf43-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf43-2:1	chr5	 60627592	 60628078	-	lnc-C5orf43-2	lnc-C5orf43-2:1	XLOC_004841	linc-C5orf43-4	ZSWIM6	NA	chr5:60628100-60637805	inter
CUST_1257_PI429285431	0.90518904	A	0.9108752	A	0.996066411136802	0	lncRNA	1249-1_{1..787}	"transcript_id ""ENST00000440341.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440341.1"" | genecode_v17"	chr2	224370194	224370980	+	ENSG00000235610.1	ENST00000440341.1	AC013448.2	AC013448.2-001	NA	NA	NA	inter
CUST_40367_PI429285431	0.89045215	A	0.89797664	A	0.994797998488523	0	lncRNA	41166-1_{1..1424}	n409121|NR_033252|lncRNA|Homosapiens||RefGeneNoncode|NR_033252||-0.4888840|-0.2572916	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409121|NR_033252|lncRNA|Homosapiens||RefGeneNoncode|NR_033252||-0.4888840|-0.2572916	chr15	 45670897	 45672320	+	NA	NA	NA	NA	GATM	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80chr15:45660897-45670980"	NA	inner
CUST_4761_PI429285431	1.7497879	A	1.2195219	A	1.44419544761706	0	lncRNA	4706-1_{1..472}	"transcript_id ""ENST00000550990.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550990.1"" | genecode_v17"	chr14	 29400776	 29401247	+	ENSG00000258038.1	ENST00000550990.1	CTD-2384A14.1	CTD-2384A14.1-006	NA	NA	NA	inter
CUST_14308_PI429285431	1.6384385	A	2.309826	A	0.627902516737425	0	lncRNA	15967-1_{1..300}	lnc-SYNPR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYNPR-1:1	chr3	 63134356	 63134655	+	lnc-SYNPR-1	lnc-SYNPR-1:1	XLOC_002682	linc-SYNPR-1	NA	NA	NA	inter
CUST_19628_PI429285431	0.9081271	A	0.92441183	A	0.988775752541293	0	lncRNA	21284-1_{1..689}	lnc-ZSWIM2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZSWIM2-5:2	chr2	186664807	186665495	-	lnc-ZSWIM2-5	lnc-ZSWIM2-5:2	ENSG00000231646.1	AC008174.3	FSIP2	"hg19_refFlat_FSIP2:range=chr2:186603355-1866979535'pad=0,hg19_refFlat_FSIP2:range=chr2:186603355-1866979535'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10chr2:186654807-186674877"	NA	inner
CUST_24441_PI429285431	5.787464	P	5.795119	P	0.994708010507108	0	lncRNA	25994-1_{1..370}	lnc-RPRML-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPRML-3:5	chr17	 45177201	 45177570	-	lnc-RPRML-3	lnc-RPRML-3:5	ENSG00000262879.1	RP11-156P1.3	NA	NA	NA	inter
CUST_50201_PI429285431	1.4750417	A	2.1125374	A	0.642827832585671	0	lncRNA	53926-1_{1..646}	hg19_lincRNAsTranscripts_TCONS_l2_00029283 range=chr9:43004012-43007184 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029283 range=chr9:43004012-43007184 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 43004012	 43004657	-	NA	NA	NA	NA	ANKRD20A3	NA	chr9:43007108-43017184	inter
CUST_21407_PI429285431	3.4395678	P	3.360101	P	1.05662745359299	0	lncRNA	23028-1_{1..628}	lnc-TMEM123-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM123-1:1	chr11	102101458	102102085	-	lnc-TMEM123-1	lnc-TMEM123-1:1	ENSG00000254422.1	RP11-864G5.3	YAP1	"hg19_refFlat_YAP1:range=chr11:101985088-1021006715'pad=0,hg19_refFlat_YAP1:range=chr11:101985088-1021006715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_YAP1:range=chr11:101981580-1021006715'pad=0,hg19_refFlat_YAP1:range=chr11:101981580-1021006715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50chr11:102091458-102104154"	NA	inner
CUST_8413_PI429285431	0.89295393	A	2.8180375	A	0.263325005101068	0	lncRNA	9988-1_{1..1514}	lnc-HIST1H2AI-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HIST1H2AI-1:3	chr6	 27730517	 27732030	+	lnc-HIST1H2AI-1	lnc-HIST1H2AI-1:3	ENSG00000248841	XLOC_005221	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
CUST_18089_PI429285431	1.6215276	A	2.0254233	A	0.755814603989443	0	lncRNA	19824-1_{1..288}	lnc-CMPK2-12:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMPK2-12:1	chr2	  5859815	  5860102	-	lnc-CMPK2-12	lnc-CMPK2-12:1	XLOC_001959	linc-RNASEH1-1	NA	NA	NA	inter
LNCA_19_P00808846	3.7206955	P	3.9660022	P	0.843636429881053	0	lncRNA	ENST00000413645	NA	NA	NA	NA	XLOC_l2_008991	NA	ENST00000413645	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008991), lincRNA [TCONS_l2_00017326]"	chr21:18003158-18003217	hs|21q21.1	Agilent_HUMAN_G3V2	ENST00000413645	ENST00000413645	chr21	 18003158	 18003217	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40058_PI429285431	0.894314	A	0.90598387	A	0.991943689933847	0	lncRNA	40908-3_{6001..6477}	n407262|NR_026730|lncRNA|Homosapiens||RefGeneNoncode|NR_026730||1.5053100|-0.2751882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407262|NR_026730|lncRNA|Homosapiens||RefGeneNoncode|NR_026730||1.5053100|-0.2751882	chr13	 25508892	 25509368	-	NA	NA	NA	NA	CENPJ	"hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-22.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PARP4:range=chr13:24995257-250779145'pad=0,hg19_refFlat_PARP4:range=chr13:24995257-250779145'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40chr13:25492892-25497085"	NA	inter
CUST_19778_PI429285431	1.4333868	A	0.9349042	A	1.41272690062493	0	lncRNA	21436-1_{1..442}	lnc-LYRM2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LYRM2-1:2	chr6	 90276609	 90277050	-	lnc-LYRM2-1	lnc-LYRM2-1:2	ENSG00000237027.1	RP11-16C18.3	ANKRD6	NA	chr6:90266609-90286690	inner
CUST_19208_PI429285431	0.89035696	A	0.8972096	A	0.995261374783539	0	lncRNA	20878-1_{1..581}	lnc-RGS5-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RGS5-1:11	chr1	163291412	163291992	-	lnc-RGS5-1	lnc-RGS5-1:11	ENSG00000232995.2	RP11-267N12.3	NUF2	NA	chr1:163291723-163301525	inner
CUST_17053_PI429285431	2.893725	A	2.9100032	A	0.988780227998748	0	lncRNA	18762-2_{3001..3360}	lnc-AMOTL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AMOTL2-2:1	chr3	134061753	134062112	-	lnc-AMOTL2-2	lnc-AMOTL2-2:1	XLOC_003261	linc-RYK	NA	NA	NA	inter
CUST_41469_PI429285431	3.1249108	P	3.9062207	P	0.581838271243795	0	lncRNA	42661-1_{1..112}	ENST00000578227 ncrna:miRNA chromosome:GRCh37:4:158281267:158281378:1 gene:ENSG00000263738 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578227 ncrna:miRNA chromosome:GRCh37:4:158281267:158281378:1 gene:ENSG00000263738 gene_biotype:miRNA transcript_biotype:miRNA	chr4	158281267	158281378	+	ENSG00000263738	ENST00000578227	NA	NA	GRIA2	NA	chr4:158271267-158287227	inner
CUST_44855_PI429285431	1.2710729	A	1.9527009	A	0.623461336387202	0	lncRNA	49381-1_{1..1672}	"gi|223029501|ref|NR_026773.1| Homo sapiens chromosome 6 open reading frame 123 (C6orf123), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223029501|ref|NR_026773.1| Homo sapiens chromosome 6 open reading frame 123 (C6orf123), non-coding RNA"	Chr6	168185217	168186888	-	26238	NR_026773.1	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70"	NA	inter
CUST_39286_PI429285431	3.9517925	P	2.352039	A	3.03091522423755	0	lncRNA	40257-1_{1..1211}	n386264|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fnw.1||-1.4139600|-0.4707753	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386264|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fnw.1||-1.4139600|-0.4707753	chr2	152332639	152333849	+	NA	NA	NA	NA	RIF1	NA	chr2:152322639-152333860	inner
CUST_8062_PI429285431	0.90531826	A	0.9120445	A	0.995348577238196	0	lncRNA	9669-1_{1..499}	lnc-C20orf197-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C20orf197-3:9	chr20	 59102445	 59102943	+	lnc-C20orf197-3	lnc-C20orf197-3:9	ENSG00000228340	RP5-1043L13.1	NA	NA	NA	inter
CUST_9533_PI429285431	0.8946009	A	0.922078	A	0.981134548492513	0	lncRNA	11044-1_{1..305}	lnc-RP11-1007G5.2.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-1007G5.2.1-3:1	chr11	128083877	128084181	+	lnc-RP11-1007G5.2.1-3	lnc-RP11-1007G5.2.1-3:1	XLOC_009326	linc-FLI1-2	NA	NA	NA	inter
CUST_8041_PI429285431	3.864959	P	4.325467	P	0.726730318217964	0	lncRNA	9649-1_{1..562}	lnc-EVX1-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EVX1-8:1	chr7	 27191913	 27192474	+	lnc-EVX1-8	lnc-EVX1-8:1	ENSG00000254369	RP1-170O19.2	HOXA5	NA	chr7:27181913-27183287	inter
CUST_12884_PI429285431	0.90618217	A	1.5532051	A	0.638596729746919	0	lncRNA	14512-1_{1..377}	lnc-BASP1-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BASP1-3:9	chr5	 17441578	 17441954	+	lnc-BASP1-3	lnc-BASP1-3:9	XLOC_004308	linc-PRDM9-8	NA	NA	NA	inter
CUST_32923_PI429285431	6.479987	P	6.259529	P	1.16510340313173	0	lncRNA	34548-1_{1..3000}	n339596|BX648266|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2040|NULL|-0.9052230|-0.3271649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339596|BX648266|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2040|NULL|-0.9052230|-0.3271649	chr20	 21128343	 21131342	+	NA	NA	NA	NA	PLK1S1	NA	chr20:21118343-21144889	inner
CUST_9712_PI429285431	0.8878646	A	0.90075594	A	0.991104207817973	0	lncRNA	11228-1_{1..317}	lnc-SCN1A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCN1A-1:2	chr2	166984281	166984597	-	lnc-SCN1A-1	lnc-SCN1A-1:2	XLOC_002380	linc-SCN1A	SCN1A	NA	chr2:166974281-166994516	inner
CUST_32475_PI429285431	5.4686728	P	5.1810746	P	1.22060651843135	0	lncRNA	34144-1_{1..419}	n339077|CR601490|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1507|NULL|-0.6191610|-0.1435215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339077|CR601490|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1507|NULL|-0.6191610|-0.1435215	chr16	 11374697	 11375115	-	NA	NA	NA	NA	PRM1	NA	chr16:11374693-11375192	inner
LNCA_21_P0013794	0.890643	A	0.8894386	A	1.00083517502887	0	lncRNA	THC2723961	NA	NA	NA	NA	XLOC_l2_015632	NA	NA	THC2723961	NA	"BROAD Institute lincRNA (XLOC_l2_015632), lincRNA [TCONS_l2_00030371]"	chrX:136103899-136103958	hs|Xq26.3	Agilent_HUMAN_G3V2	THC2723961	THC2723961	chrX	136103899	136103958	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013783	1.5318344	A	0.9175936	A	1.53075224611545	0	lncRNA	TCONS_l2_00030302	NA	NA	NA	NA	XLOC_l2_015585	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015585), lincRNA [TCONS_l2_00030302]"	chrX:102089560-102089619	hs|Xq22.1	Agilent_HUMAN_G3V2	TCONS_l2_00030302	TCONS_l2_00030302	chrX	102089560	102089619	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004836	1.6083516	A	2.7976665	A	0.438511049215315	0	lncRNA	TCONS_00011691	NA	NA	NA	NA	XLOC_005166	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005166), lincRNA [TCONS_00011691]"	chr6:9226007-9238553	hs|6p24.3	Agilent_HUMAN_G3V2	TCONS_00011691	TCONS_00011691	chr6	  9226007	  9238553	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005549	0.8908995	A	3.017545	P	0.228989682191446	0	lncRNA	TCONS_00014032	NA	NA	NA	NA	XLOC_006669	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006669), lincRNA [TCONS_00014032]"	chr7:155986494-155985849	hs|7q36.3	Agilent_HUMAN_G3V2	TCONS_00014032	TCONS_00014032	chr7	155985849	155986494	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007144	2.235828	A	1.9834479	A	1.19117064008922	0	lncRNA	ENST00000444862	NA	NA	NA	NA	XLOC_009159	NA	ENST00000444862	THC2734323	NA	"BROAD Institute lincRNA (XLOC_009159), lincRNA [TCONS_00019145]"	chr11:64269990-64270049	hs|11q13.1	Agilent_HUMAN_G3V2	ENST00000444862	ENST00000444862	chr11	 64269990	 64270049	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43682_PI429285431	1.7072918	A	0.8945116	A	1.75659329251312	0	lncRNA	48434-2_{3001..4680}	"gi|289063429|ref|NR_033302.1| Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 9 (DHX9), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|289063429|ref|NR_033302.1| Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 9 (DHX9), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_033302.1	NA	NA	NA	NA	NA	Unknown
CUST_30321_PI429285431	0.904946	A	0.8937532	A	1.0077884310245	0	lncRNA	32097-1_{1..284}	n335232|AY540024|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255319|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255319|-0.1941590|-0.3512798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335232|AY540024|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255319|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255319|-0.1941590|-0.3512798	chrX	 10437514	 10437797	-	NA	NA	NA	NA	MID1	NA	chrX:10427514-10545202	inner
CUST_6931_PI429285431	1.9924779	A	2.0320659	A	0.972932754608216	0	lncRNA	6882-1_{1..727}	"transcript_id ""ENST00000412656.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412656.1"" | genecode_v17"	chr22	 20640968	 20641694	-	ENSG00000223579.2	ENST00000412656.1	AC011718.2	AC011718.2-002	LOC729461	NA	chr22:20630968-20656782	inter
CUST_20201_PI429285431	9.025367	P	9.394228	P	0.774393635117363	0	lncRNA	21845-1_{1..555}	lnc-RPRM-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RPRM-1:2	chr2	154306185	154306739	-	lnc-RPRM-1	lnc-RPRM-1:2	ENSG00000227400.2	AC012501.2	RPRM	NA	chr2:154296185-154316334	inter
CUST_26104_PI429285431	7.0008645	P	7.022171	P	0.985339979606002	0	lncRNA	27616-1_{1..376}	lnc-RPGR-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPGR-2:1	chrX	 38662986	 38663361	-	lnc-RPGR-2	lnc-RPGR-2:1	ENSG00000238123.1	MID1IP1-AS1	MID1IP1	NA	chrX:38660685-38665785	inner
LNCA_19_P00315780	3.0340393	P	2.201069	A	1.78134912914323	0	lncRNA	XR_113168	XR_113168	XR_113168	NA	NA	LOC100506342	uncharacterized LOC100506342	NA	THC2607998	NA	"PREDICTED: Homo sapiens hypothetical LOC100506342 (LOC100506342), miscRNA [XR_113168]"	chr8:90733518-90733459	hs|8q21.3	Agilent_HUMAN_G3V2	XR_113168	XR_113168	chr8	 90733459	 90733518	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43253_PI429285431	0.88399297	A	1.1463566	A	0.833720878735252	0	lncRNA	48070-1_{1..533}	ENST00000601420 havana:sense_intronic chromosome:GRCh37:19:12640582:12643787:-1 gene:ENSG00000269560 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000601420 havana:sense_intronic chromosome:GRCh37:19:12640582:12643787:-1 gene:ENSG00000269560 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 12640582	 12641114	-	ENSG00000269560	ENST00000601420	NA	NA	ZNF564	NA	chr19:12630582-12653787	inner
CUST_24630_PI429285431	5.0354733	P	5.13208	P	0.935230120561297	0	lncRNA	26179-1_{1..554}	lnc-PAX9-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAX9-4:1	chr14	 37297627	 37298180	+	lnc-PAX9-4	lnc-PAX9-4:1	ENSG00000258601.1	RP11-81F13.2	SLC25A21	NA	chr14:37287627-37307934	inner
CUST_23064_PI429285431	6.603275	P	6.5823154	P	1.01463413323519	0	lncRNA	24635-1_{1..361}	lnc-GRHL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GRHL2-1:1	chr8	102701197	102701557	+	lnc-GRHL2-1	lnc-GRHL2-1:1	ENSG00000253629.1	KB-1107E3.1	NCALD	NA	chr8:102698770-102711321	inner
CUST_45222_PI429285431	1.5387604	A	0.90697813	A	1.54947799870126	0	lncRNA	49681-2_{3001..6000}	"gi|402169578|ref|NR_073119.1| Homo sapiens ubiquitin-conjugating enzyme E2W (putative) (UBE2W), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|402169578|ref|NR_073119.1| Homo sapiens ubiquitin-conjugating enzyme E2W (putative) (UBE2W), transcript variant 4, non-coding RNA"	Chr8	 74701455	 74704454	-	55284	NR_073119.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40"	NA	inter
CUST_11445_PI429285431	1.0403582	A	1.201671	A	0.894211001118786	0	lncRNA	13013-1_{1..373}	lnc-MYO6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYO6-2:2	chr6	 77303246	 77303618	+	lnc-MYO6-2	lnc-MYO6-2:2	XLOC_005354	linc-IRAK1BP1-3	NA	NA	NA	inter
CUST_38336_PI429285431	0.91532874	A	0.9195691	A	0.997065121622115	0	lncRNA	39382-1_{1..3000}	n382063|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vgn.2||1.7704000|-0.4029430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n382063|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vgn.2||1.7704000|-0.4029430	chr13	 52793484	 52796483	-	NA	NA	NA	NA	NA	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60"	NA	inter
CUST_41268_PI429285431	0.91081935	A	1.1274253	A	0.860587654818233	0	lncRNA	42233-1_{1..97}	ENST00000385035 ncrna:miRNA chromosome:GRCh37:6:45165411:45165507:-1 gene:ENSG00000207769 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385035 ncrna:miRNA chromosome:GRCh37:6:45165411:45165507:-1 gene:ENSG00000207769 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 45165411	 45165507	-	ENSG00000207769	ENST00000385035	NA	NA	SUPT3H	NA	chr6:45155411-45175507	inner
CUST_39773_PI429285431	1.2083048	A	1.2752528	A	0.954655422788772	0	lncRNA	40689-1_{1..3000}	n405975|NR_003256|lncRNA|Homosapiens||RefGeneNoncode|NR_003256||3.9908500|-0.1922757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405975|NR_003256|lncRNA|Homosapiens||RefGeneNoncode|NR_003256||3.9908500|-0.1922757	chr14	 74751979	 74754978	-	NA	NA	NA	NA	ABCD4	NA	chr14:74751980-74769767	inter
CUST_5583_PI429285431	1.5481334	A	1.6061206	A	0.960603386661641	0	lncRNA	5512-1_{1..456}	"transcript_id ""ENST00000564293.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564293.1"" | genecode_v17"	chr16	 64769828	 64770283	+	ENSG00000259859.1	ENST00000564293.1	RP11-439I14.2	RP11-439I14.2-001	NA	NA	NA	inter
CUST_43205_PI429285431	5.7865005	P	5.8260098	P	0.972985830202242	0	lncRNA	48019-1_{1..230}	ENST00000586403 havana:sense_intronic chromosome:GRCh37:19:1413900:1414734:1 gene:ENSG00000267759 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000586403 havana:sense_intronic chromosome:GRCh37:19:1413900:1414734:1 gene:ENSG00000267759 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	  1413900	  1414129	+	ENSG00000267759	ENST00000586403	NA	NA	DAZAP1	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20chr19:1407584-1424734"	NA	inner
CUST_33973_PI429285431	0.90206814	A	0.9788442	A	0.948174132499751	0	lncRNA	35510-1_{1..237}	n340781|AF014455|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3244|NULL|-1.0954600|-0.5669844	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n340781|AF014455|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3244|NULL|-1.0954600|-0.5669844	chr17	 57862173	 57862409	+	NA	NA	NA	NA	VMP1	NA	chr17:57852173-57872396	inner
CUST_36475_PI429285431	2.4684124	A	2.0613413	A	1.32599110719592	0	lncRNA	37680-2_{3001..3422}	n344980|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_529|NULL|-1.4297300|-0.3451773	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344980|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_529|NULL|-1.4297300|-0.3451773	chr8	104259113	104259534	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49412_PI429285431	0.89883405	A	1.9079267	A	0.496858637332121	0	lncRNA	53218-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00023260 range=chr5:175570100-175598721 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023260 range=chr5:175570100-175598721 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175570100	175573099	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80"	NA	inter
LNCA_21_P0013556	7.150312	P	6.9022164	P	1.18763836216821	0	lncRNA	TCONS_l2_00028630	NA	NA	NA	NA	XLOC_l2_014711	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014711), lincRNA [TCONS_l2_00028630]"	chr9:15017475-15017534	hs|9p22.3	Agilent_HUMAN_G3V2	TCONS_l2_00028630	TCONS_l2_00028630	chr9	 15017475	 15017534	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4395_PI429285431	0.9546476	A	0.91268337	A	1.02951455746267	0	lncRNA	4346-1_{1..3000}	"transcript_id ""ENST00000547179.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000547179.1"" | genecode_v17"	chr12	103203058	103206057	-	ENSG00000258169.1	ENST00000547179.1	LINC00485	LINC00485-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60"	NA	inter
LNCA_21_P0011023	0.9022876	A	0.898161	A	1.00286443583419	0	lncRNA	ENST00000511073	NA	NA	NA	NA	XLOC_l2_002271	NA	ENST00000511073	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002271), lincRNA [TCONS_l2_00005300]"	chr11:28923903-29059334	hs|11p14.1	Agilent_HUMAN_G3V2	ENST00000511073	ENST00000511073	chr11	 28923903	 29059334	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35913_PI429285431	4.9149246	P	5.6563287	P	0.598156913932972	0	lncRNA	37284-1_{1..1069}	n344559|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_107|NULL|-1.3528400|-0.2390004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344559|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_107|NULL|-1.3528400|-0.2390004	chr17	 63096934	 63098002	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
LNCA_21_P0005078	3.905701	P	5.612534	P	0.306331790537751	0	lncRNA	TCONS_00012818	NA	NA	NA	NA	XLOC_005900	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005900), lincRNA [TCONS_00012818]"	chr6:159991138-159991079	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_00012818	TCONS_00012818	chr6	159991079	159991138	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49733_PI429285431	1.4006658	A	1.3981522	A	1.00174381343043	0	lncRNA	53505-2_{3001..3822}	hg19_lincRNAsTranscripts_TCONS_l2_00026508 range=chr7:35791468-35840234 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026508 range=chr7:35791468-35840234 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 35794468	 35795289	-	NA	NA	NA	NA	7-Sep	NA	chr7:35840627-35850234	inter
CUST_34665_PI429285431	0.9014985	A	0.8984362	A	1.00212487897342	0	lncRNA	36117-1_{1..1574}	n341568|U79277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4039|NULL|0.0296394|-0.4302484	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341568|U79277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4039|NULL|0.0296394|-0.4302484	chr8	101928752	101930325	-	NA	NA	NA	NA	YWHAZ	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00chr8:101930804-101940297"	NA	inter
LNCA_21_P0014554	6.840522	P	6.9145885	P	0.949956594293315	0	lncRNA	ENST00000556071	XR_110287	XR_110287	NA	Hs.730181	LOC100506412	NA	ENST00000556071	THC2610364	NA	"PREDICTED: Homo sapiens hypothetical LOC100506412 (LOC100506412), miscRNA [XR_110287]"	chr14:46970736-46970795	hs|14q21.2	Agilent_HUMAN_G3V2	ENST00000556071	ENST00000556071	chr14	 46970736	 46970795	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31164_PI429285431	5.380109	P	5.746516	P	0.775711986595219	0	lncRNA	32959-1_{1..353}	n337575|EF565083|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395572|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395572|-0.9225230|-0.3249924	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337575|EF565083|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395572|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395572|-0.9225230|-0.3249924	chr1	200443206	200443558	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007631	1.0089493	A	0.9177002	A	1.06529212400907	0	lncRNA	TCONS_00020575	NA	NA	NA	NA	XLOC_009891	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009891), lincRNA [TCONS_00020575]"	chr12:115335948-115336007	hs|12q24.21	Agilent_HUMAN_G3V2	TCONS_00020575	TCONS_00020575	chr12	115335948	115336007	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005428	3.195523	P	3.1961977	P	0.999532442936163	0	lncRNA	TCONS_00013587	NA	NA	NA	NA	XLOC_006244	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006244), lincRNA [TCONS_00013587]"	chr7:129172020-129172079	hs|7q32.1	Agilent_HUMAN_G3V2	TCONS_00013587	TCONS_00013587	chr7	129172020	129172079	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39276_PI429285431	0.8885211	A	0.8989404	A	0.992803908336976	0	lncRNA	40248-1_{1..1692}	n386247|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fhf.2||1.1909100|-0.3085787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386247|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fhf.2||1.1909100|-0.3085787	chr2	 89065418	 89067109	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40413_PI429285431	11.06023	P	11.280226	P	0.8585678168899	0	lncRNA	41198-1_{1..2270}	n409279|NR_033488_6|lncRNA|Homosapiens||RefGeneNoncode|NR_033488_6||9.6261500|-0.0948836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409279|NR_033488_6|lncRNA|Homosapiens||RefGeneNoncode|NR_033488_6||9.6261500|-0.0948836	chr6	 31654725	 31656994	-	NA	NA	NA	NA	ABHD16A	NA	chr6:31654726-31671137	inter
CUST_26712_PI429285431	5.025413	P	5.372832	P	0.78598898525394	0	lncRNA	28208-1_{1..812}	n1840|AF400492|UBE3AantisenseRNA|Homosapiens|UBE3AantisenseRNA|NONCODEv2.0|n1840|NULL|-0.4925550|-0.1137173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n1840|AF400492|UBE3AantisenseRNA|Homosapiens|UBE3AantisenseRNA|NONCODEv2.0|n1840|NULL|-0.4925550|-0.1137173	chr15	 25425460	 25426271	+	NA	NA	NA	NA	SNRPN	NA	chr15:25415460-25437855	inter
CUST_16050_PI429285431	1.0675496	A	0.9543106	A	1.08165393778718	0	lncRNA	17750-1_{1..373}	lnc-PPP6C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP6C-1:1	chr9	127962505	127962877	-	lnc-PPP6C-1	lnc-PPP6C-1:1	XLOC_007850	linc-PPP6C	RABEPK	NA	chr9:127952505-127972755	inter
CUST_17767_PI429285431	1.048697	A	1.3229904	A	0.826855194312598	0	lncRNA	19499-1_{1..494}	lnc-EMX2-5:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EMX2-5:6	chr10	120007211	120007704	+	lnc-EMX2-5	lnc-EMX2-5:6	XLOC_008636	linc-NANOS1-3	NA	NA	NA	inter
CUST_33321_PI429285431	3.2352333	A	4.003376	P	0.587172904227813	0	lncRNA	34904-1_{1..3000}	n340038|BX648649|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2493|NULL|-1.0932100|-0.4025315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340038|BX648649|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2493|NULL|-1.0932100|-0.4025315	chr10	 60502900	 60505899	+	NA	NA	NA	NA	BICC1	NA	chr10:60492900-60517642	inner
CUST_26469_PI429285431	6.5732594	P	6.861774	P	0.818744604858343	0	lncRNA	27977-1_{1..401}	lnc-LPPR5.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-LPPR5.1-1:1	chr1	 97885563	 97885963	-	lnc-LPPR5.1-1	lnc-LPPR5.1-1:1	ENSG00000232542.1	DPYD-IT1	DPYD	NA	chr1:97875563-97895697	inner
CUST_38173_PI429285431	0.8938823	A	0.9030976	A	0.993632797876236	0	lncRNA	39243-2_{3001..3303}	n381427|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001izx.2||4.3283300|-0.3861438	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381427|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001izx.2||4.3283300|-0.3861438	chr10	 42906623	 42906925	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006329	1.1254138	A	1.9287988	A	0.573003159882103	0	lncRNA	TCONS_00016492	NA	NA	NA	NA	XLOC_007869	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007869), lincRNA [TCONS_00016492]"	chr9:132324873-132324814	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_00016492	TCONS_00016492	chr9	132324814	132324873	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47872_PI429285431	7.7807245	P	8.080879	P	0.812165415897913	0	lncRNA	51771-1_{1..3000}	"gi|410171545|ref|XR_171240.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410171545|ref|XR_171240.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	XR_171240.1	NA	NA	NA	NA	NA	Unknown
CUST_43314_PI429285431	5.375268	P	5.2743053	P	1.07248888791369	0	lncRNA	48145-1_{1..624}	ENST00000587477 havana:lincRNA chromosome:GRCh37:19:37747300:37756437:1 gene:ENSG00000226686 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"gencode_v17,ensembl.GRCh37.72,"	>ENST00000587477 havana:lincRNA chromosome:GRCh37:19:37747300:37756437:1 gene:ENSG00000226686 gene_biotype:lincRNA transcript_biotype:lincRNA	chr19	 37747300	 37747923	+	ENSG00000226686	ENST00000587477	NA	NA	NA	NA	NA	inter
CUST_18634_PI429285431	3.9911275	P	3.9116335	P	1.05664737501565	0	lncRNA	20339-1_{1..2000}	lnc-CENPP-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CENPP-3:4	chr9	 94920383	 94922382	+	lnc-CENPP-3	lnc-CENPP-3:4	ENSG00000225511	C9orf44	NA	NA	NA	inter
CUST_8858_PI429285431	2.191718	A	0.9041424	A	2.44117479525174	0	lncRNA	10397-1_{1..783}	lnc-CTH-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CTH-6:2	chr1	 71702813	 71703595	+	lnc-CTH-6	lnc-CTH-6:2	ENSG00000229956	RP11-386O9.1	NA	NA	NA	inter
CUST_21681_PI429285431	1.4672122	A	2.5371876	A	0.476327121006826	0	lncRNA	23291-1_{1..496}	lnc-ITGB3BP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITGB3BP-1:2	chr1	 63789162	 63789657	-	lnc-ITGB3BP-1	lnc-ITGB3BP-1:2	ENSG00000230798.1	RP4-792G4.2	FOXD3	"hg19_refFlat_FOXD1:range=chr5:72742792-727441875'pad=0,hg19_refFlat_FOXD1:range=chr5:72742792-727441875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FOXD2:range=chr1:47903808-479052955'pad=0,hg19_refFlat_FOXD2:range=chr1:47903808-479052955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_FOXD4:range=chr9:116800-1181195'pad=0,hg19_refFlat_FOXD4:range=chr9:116800-1181195'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FOXD3:range=chr1:63788730-637901665'pad=0,hg19_refFlat_FOXD3:range=chr1:63788730-637901665'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_FOXD4L1:range=chr2:114256834-1142580605'pad=0,hg19_refFlat_FOXD4L1:range=chr2:114256834-1142580605'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30chr1:63788730-63790797"	NA	inner
CUST_9806_PI429285431	0.893148	A	1.1453212	A	0.839630686633413	0	lncRNA	11322-1_{1..355}	lnc-IRF8-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRF8-4:2	chr16	 86233031	 86233385	+	lnc-IRF8-4	lnc-IRF8-4:2	XLOC_011812	linc-FOXF1-3	NA	NA	NA	inter
LNCA_21_P0009198	2.9843187	A	3.4535222	P	0.722363298494092	0	lncRNA	XR_109406	XR_109406	XR_109406	NA	NA	LOC100506609	uncharacterized LOC100506609	NA	THC2629425	NA	"PREDICTED: Homo sapiens hypothetical LOC100506609 (LOC100506609), miscRNA [XR_109406]"	chr17:49012409-49012350	hs|17q21.33	Agilent_HUMAN_G3V2	XR_109406	XR_109406	chr17	 49012350	 49012409	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51066_PI429285431	1.437193	A	1.8011256	A	0.777043569950804	0	lncRNA	54703-1_{1..1832}	hg19_lincRNAsTranscripts_TCONS_l2_00006771 range=chr13:30727905-30743424 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006771 range=chr13:30727905-30743424 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 30727905	 30729736	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1941_PI429285431	0.91333985	A	1.2601259	A	0.786333895898066	0	lncRNA	1933-1_{1..510}	"transcript_id ""ENST00000505781.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505781.1"" | genecode_v17"	chr4	150587209	150587718	+	ENSG00000250905.1	ENST00000505781.1	RP11-707F2.1	RP11-707F2.1-001	LOC285423	NA	chr4:150577209-150642301	inter
CUST_47544_PI429285431	5.236415	P	5.5605335	P	0.79878630309236	0	lncRNA	51553-1_{1..628}	"gi|178057352|ref|NR_021492.1| Homo sapiens uncharacterized transcript (LOC100144603), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|178057352|ref|NR_021492.1| Homo sapiens uncharacterized transcript (LOC100144603), non-coding RNA"	Chr22	 51021455	 51022082	+	100144603	NR_021492.1	NA	NA	NA	NA	NA	inter
CUST_41053_PI429285431	1.1492587	A	0.89929205	A	1.18917962506357	0	lncRNA	41714-1_{1..1024}	n411724|NR_045004|lncRNA|Homosapiens||RefGeneNoncode|NR_045004||5.8750300|-0.1077319	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411724|NR_045004|lncRNA|Homosapiens||RefGeneNoncode|NR_045004||5.8750300|-0.1077319	chr11	 86567972	 86568995	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50011_PI429285431	4.6222672	P	4.7556305	P	0.911703551083986	0	lncRNA	53748-1_{1..807}	hg19_lincRNAsTranscripts_TCONS_l2_00028325 range=chr8:93711982-93778121 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028325 range=chr8:93711982-93778121 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 93711982	 93712788	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24443_PI429285431	0.9010886	A	0.9070246	A	0.995893931383068	0	lncRNA	25996-1_{1..580}	lnc-SP140-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SP140-1:1	chr2	231099653	231100232	+	lnc-SP140-1	lnc-SP140-1:1	ENSG00000243565.1	AC009950.1	SP110	NA	chr2:231089653-231090444	inner
LNCA_21_P0005636	0.9056221	A	1.982769	A	0.473965219394612	0	lncRNA	ENST00000511929	NA	NA	NA	NA	XLOC_007026	NA	ENST00000511929	NA	NA	"BROAD Institute lincRNA (XLOC_007026), lincRNA [TCONS_00014552]"	chr8:23087956-23087897	hs|8p21.3	Agilent_HUMAN_G3V2	ENST00000511929	ENST00000511929	chr8	 23087897	 23087956	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9602_PI429285431	5.823238	P	6.381177	P	0.679271862625253	0	lncRNA	11117-1_{1..396}	lnc-MAP1LC3B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP1LC3B-1:1	chr16	 87351463	 87351858	+	lnc-MAP1LC3B-1	lnc-MAP1LC3B-1:1	XLOC_011819	linc-MAP1LC3B-2	C16orf95	NA	chr16:87341463-87351026	inter
CUST_43869_PI429285431	0.8926312	A	0.89745206	A	0.996664011299682	0	lncRNA	48589-2_{3001..4190}	"gi|363543317|ref|NR_045634.1| Homo sapiens BOLA3 antisense RNA 1 (head to head) (BOLA3-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|363543317|ref|NR_045634.1| Homo sapiens BOLA3 antisense RNA 1 (head to head) (BOLA3-AS1), transcript variant 1, non-coding RNA"	Chr2	 74378108	 74379297	+	100507171	NR_045634.1	NA	NA	NA	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80"	NA	inter
CUST_31805_PI429285431	2.0182571	A	0.9131863	A	2.15109434289302	0	lncRNA	33542-1_{1..1868}	n338346|AK097323|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|740|NULL|0.0429252|-0.2637252	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338346|AK097323|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|740|NULL|0.0429252|-0.2637252	chr14	 64907088	 64908955	-	NA	NA	NA	NA	MTHFD1	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MTHFD1:range=chr14:64855146-649250215'pad=0,hg19_refFlat_MTHFD1:range=chr14:64855146-649250215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr14:64897088-64918956"	NA	inner
CUST_31324_PI429285431	2.791446	A	2.561635	A	1.17268131226765	0	lncRNA	33107-1_{1..667}	n337790|L22650|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|172|NULL|2.6333900|-0.2307021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337790|L22650|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|172|NULL|2.6333900|-0.2307021	chrX	 96788171	 96788837	-	NA	NA	NA	NA	DIAPH2	NA	chrX:96778171-96855597	inner
LNCA_21_P0011956	6.9441237	P	7.1220098	P	0.883997319423185	0	lncRNA	TCONS_l2_00014844	NA	NA	NA	NA	XLOC_l2_008221	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008221), lincRNA [TCONS_l2_00014844]"	chr2:114618877-114600898	hs|2q14.1	Agilent_HUMAN_G3V2	TCONS_l2_00014844	TCONS_l2_00014844	chr2	114600898	114618877	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3327_PI429285431	0.98999673	A	0.88881505	A	1.07265168839098	0	lncRNA	3306-1_{1..555}	"transcript_id ""ENST00000502901.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502901.2"" | genecode_v17"	chr8	137059264	137059818	+	ENSG00000253248.1	ENST00000502901.2	RP11-149P24.1	RP11-149P24.1-002	NA	NA	NA	inter
LNCA_21_P0009335	0.8998215	A	0.9034228	A	0.997506882052317	0	lncRNA	TCONS_00025699	NA	NA	NA	NA	XLOC_012527	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012527), lincRNA [TCONS_00025699]"	chr17:54587859-54586766	hs|17q22	Agilent_HUMAN_G3V2	TCONS_00025699	TCONS_00025699	chr17	 54586766	 54587859	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21_PI429201921	3.0449333	A	3.2692802	A	0.855982436462343	0	lncRNA	22-1_{1..926}	TC14001991.hg.1	TCONS_00022408-XLOC_011011 // Rinn lincRNAs // linc-KLHL28-1 chr14:-:45552253-45553180 // chr14 // 100 // 100 // 0 // --- // 0 /// TCONS_00022736-XLOC_011011 // Rinn lincRNAs // linc-KLHL28-1 chr14:-:45552346-45552901 // chr14 // 100 // 100 // 0 // --- // 0 /// TCONS_00023103-XLOC_011011 // Rinn lincRNAs // linc-KLHL28-1 chr14:-:45552278-45553167 // chr14 // 100 // 100 // 0 // --- // 0 /// TCONS_00022366-XLOC_011011 // Rinn lincRNAs // linc-KLHL28-1 chr14:-:45552351-45553180 // chr14 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr14:-:45552253-45553180	NA	Affy_HUMAN_HTA2.0	TCONS_00022408-XLOC_011011	linc-KLHL28-1	chr14	 45552253	 45553180	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1028_PI429285431	0.8875411	A	0.8937516	A	0.995704461764828	0	lncRNA	1018-1_{1..617}	"transcript_id ""ENST00000438897.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438897.1"" | genecode_v17"	chr2	112022860	112023476	+	ENSG00000229118.1	ENST00000438897.1	AC068491.2	AC068491.2-001	NA	NA	NA	inter
CUST_49432_PI429285431	0.8857035	A	1.5138023	A	0.647028515308215	0	lncRNA	53235-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00022665 range=chr5:177377264-177387112 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022665 range=chr5:177377264-177387112 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	177377264	177380263	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90"	NA	inter
CUST_3606_PI429285431	2.823022	A	2.743164	A	1.05691400667274	0	lncRNA	3576-1_{1..920}	"transcript_id ""ENST00000455810.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455810.1"" | genecode_v17"	chr10	  6622387	  6623306	+	ENSG00000237943.1	ENST00000455810.1	PRKCQ-AS1	PRKCQ-AS1-001	NA	NA	NA	inter
CUST_13135_PI429285431	0.9166827	A	0.92668617	A	0.993090106833265	0	lncRNA	14763-1_{1..954}	lnc-PHYHIPL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHYHIPL-2:1	chr10	 60825037	 60825990	+	lnc-PHYHIPL-2	lnc-PHYHIPL-2:1	XLOC_008489	linc-PHYHIPL	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-16.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80"	NA	inter
CUST_43628_PI429285431	9.065996	P	8.901521	P	1.12075815737403	0	lncRNA	48387-1_{1..2523}	"gi|374717335|ref|NR_046294.1| Homo sapiens misato homolog 1 (Drosophila) (MSTO1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374717335|ref|NR_046294.1| Homo sapiens misato homolog 1 (Drosophila) (MSTO1), transcript variant 6, non-coding RNA"	Chr1	155579961	155582483	+	55154	NR_046294.1	NA	NA	NA	"hg19_refFlat_GON4L:range=chr1:155720375-1558235715'pad=0,hg19_refFlat_GON4L:range=chr1:155720375-1558235715'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20"	NA	inter
CUST_44589_PI429285431	2.5374117	A	2.4887757	A	1.03428659232371	0	lncRNA	49169-1_{1..1406}	"gi|237874265|ref|NR_027706.1| Homo sapiens uncharacterized FLJ11235 (FLJ11235), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237874265|ref|NR_027706.1| Homo sapiens uncharacterized FLJ11235 (FLJ11235), non-coding RNA"	Chr5	111755280	111756685	+	54508	NR_027706.1	NA	NA	NA	NA	NA	inter
CUST_36140_PI429285431	0.90176594	A	0.91103894	A	0.993593058732252	0	lncRNA	37422-4_{9001..12000}	n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	chr8	128098803	128101802	-	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00"	NA	inter
CUST_11849_PI429285431	1.5756588	A	0.8850855	A	1.61392473450677	0	lncRNA	13426-2_{3001..4248}	lnc-FAM127A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM127A-1:1	chrX	134176057	134177304	+	lnc-FAM127A-1	lnc-FAM127A-1:1	XLOC_008072	linc-ZNF449-2	FAM127A	NA	chrX:134166333-134167576	inter
CUST_37169_PI429285431	5.688203	P	3.8110306	P	3.67354360619801	0	lncRNA	38285-2_{3001..4163}	n345604|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1153|NULL|-1.3319200|-0.3722150	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345604|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1153|NULL|-1.3319200|-0.3722150	chr3	160215795	160216957	-	NA	NA	NA	NA	KPNA4	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90chr3:160212783-160227772"	NA	inner
CUST_39639_PI429285431	6.504509	P	6.629743	P	0.916855320474642	0	lncRNA	40578-1_{1..333}	n405215|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000048993||-1.3083000|-0.2230180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405215|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000048993||-1.3083000|-0.2230180	chr10	 81253725	 81254057	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50012_PI429285431	1.2261003	A	1.1350967	A	1.06511086119303	0	lncRNA	53749-1_{1..355}	hg19_lincRNAsTranscripts_TCONS_l2_00028326 range=chr8:93712027-93798247 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028326 range=chr8:93712027-93798247 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 93712027	 93712381	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34824_PI429285431	5.327292	P	5.701207	P	0.771685551981622	0	lncRNA	36255-1_{1..1957}	n341730|AK124102|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4203|NULL|-0.9902230|-0.2334289	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n341730|AK124102|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4203|NULL|-0.9902230|-0.2334289	chr9	 98225890	 98227846	+	NA	NA	NA	NA	PTCH1	"hg19_refFlat_PTCH1:range=chr9:98209194-982706435'pad=0,hg19_refFlat_PTCH1:range=chr9:98209194-982706435'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_PTCH1:range=chr9:98209194-982480975'pad=0,hg19_refFlat_PTCH1:range=chr9:98209194-982480975'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_PTCH1:range=chr9:98209194-982791025'pad=0,hg19_refFlat_PTCH1:range=chr9:98209194-982791025'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_PTCH1:range=chr9:98209194-982787535'pad=0,hg19_refFlat_PTCH1:range=chr9:98209194-982787535'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90chr9:98215890-98242301"	NA	inner
CUST_46317_PI429285431	5.413771	P	3.4326754	P	3.947927783799	0	lncRNA	50546-2_{3001..4777}	"gi|402478656|ref|NR_073128.1| Homo sapiens kinectin 1 (kinesin receptor) (KTN1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402478656|ref|NR_073128.1| Homo sapiens kinectin 1 (kinesin receptor) (KTN1), transcript variant 6, non-coding RNA"	Chr14	 56049925	 56051701	+	3895	NR_073128.1	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_16437_PI429285431	4.834106	P	5.5286484	P	0.617905277244363	0	lncRNA	18136-1_{1..612}	lnc-AC092327.1-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092327.1-2:11	chr16	 86256123	 86256734	-	lnc-AC092327.1-2	lnc-AC092327.1-2:11	XLOC_012044	linc-COX4NB-7	NA	NA	NA	inter
CUST_49927_PI429285431	1.2635721	A	0.89270896	A	1.29312625478049	0	lncRNA	53677-1_{1..355}	hg19_lincRNAsTranscripts_TCONS_l2_00027184 range=chr7:98902269-98904274 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027184 range=chr7:98902269-98904274 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 98902269	 98902623	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27863_PI429285431	7.0894384	P	7.522422	P	0.740728319275736	0	lncRNA	29456-1_{1..1975}	n325099|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328258|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328258|0.1037500|-0.3130005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325099|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328258|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328258|0.1037500|-0.3130005	chr2	239084069	239086043	-	NA	NA	NA	NA	FAM132B	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-34.51;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80chr2:239074069-239077516"	NA	inner
CUST_16530_PI429285431	0.90489155	A	0.9124488	A	0.994775409367818	0	lncRNA	18229-1_{1..1514}	lnc-XPO7-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-XPO7-3:1	chr8	 21165621	 21167134	+	lnc-XPO7-3	lnc-XPO7-3:1	XLOC_006735	linc-XPO7-3	NA	NA	NA	inter
CUST_13823_PI429285431	0.8892395	A	1.4778736	A	0.664972184649086	0	lncRNA	15466-1_{1..204}	lnc-STAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STAP1-1:1	chr4	 66899744	 66899947	+	lnc-STAP1-1	lnc-STAP1-1:1	XLOC_003562	linc-STAP1-2	NA	NA	NA	inter
CUST_26059_PI429285431	7.802799	P	7.7147417	P	1.06293789057882	0	lncRNA	27572-2_{3001..4033}	lnc-PARP10-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PARP10-1:2	chr8	145118556	145119588	-	lnc-PARP10-1	lnc-PARP10-1:2	ENSG00000178814.11	OPLAH	OPLAH	NA	chr8:145106167-145115584	inner
CUST_47511_PI429285431	4.0027475	P	3.8811727	P	1.08792175539142	0	lncRNA	51523-1_{1..3000}	"gi|239787905|ref|NR_027780.1| Homo sapiens HMG box domain containing 4 (HMGXB4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239787905|ref|NR_027780.1| Homo sapiens HMG box domain containing 4 (HMGXB4), transcript variant 2, non-coding RNA"	Chr22	 35653445	 35656444	+	10042	NR_027780.1	NA	NA	NA	NA	NA	inter
CUST_16672_PI429285431	1.7263613	A	0.8954371	A	1.77882452419048	0	lncRNA	18376-1_{1..258}	lnc-KIF16B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIF16B-2:1	chr20	 16091244	 16091501	-	lnc-KIF16B-2	lnc-KIF16B-2:1	XLOC_013660	linc-FLRT3	NA	NA	NA	inter
CUST_1593_PI429285431	1.4189303	A	0.91615224	A	1.41693940191325	0	lncRNA	1579-1_{1..604}	"transcript_id ""ENST00000435548.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435548.1"" | genecode_v17"	chr3	186158169	186158772	+	ENSG00000234548.1	ENST00000435548.1	RP11-78H24.1	RP11-78H24.1-002	NA	NA	NA	inter
CUST_32250_PI429285431	7.1350923	P	7.134618	P	1.00032881375514	0	lncRNA	33942-1_{1..1247}	n338825|BC017573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1248|NULL|1.1444400|-0.2694161	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n338825|BC017573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1248|NULL|1.1444400|-0.2694161	chr2	 47055002	 47056248	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20204_PI429285431	0.8932949	A	1.0889995	A	0.873146354504788	0	lncRNA	21848-1_{1..568}	lnc-PAK6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAK6-1:1	chr15	 40593810	 40594377	+	lnc-PAK6-1	lnc-PAK6-1:1	ENSG00000259307.1	PLCB2-AS1	PLCB2	NA	chr15:40583810-40600174	inner
CUST_14320_PI429285431	0.90187466	A	1.5368412	A	0.643955749657239	0	lncRNA	15978-1_{1..727}	lnc-EPHB3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-EPHB3-1:1	chr3	184225528	184226254	+	lnc-EPHB3-1	lnc-EPHB3-1:1	XLOC_002950	linc-EPHB3-1	NA	NA	NA	inter
LNCA_21_P0014897	3.7448266	P	3.9753218	P	0.852342278061567	0	lncRNA	XR_132887	XR_132887	XR_132887	NA	NA	LOC100652947	uncharacterized LOC100652947	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652947 (LOC100652947), miscRNA [XR_132887]"	chr8:27850194-27850253	hs|8p21.1	Agilent_HUMAN_G3V2	XR_132887	XR_132887	chr8	 27850194	 27850253	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41084_PI429285431	0.9083866	A	0.89387345	A	1.01011051837813	0	lncRNA	41771-1_{1..63}	ENST00000583200 ncrna:miRNA chromosome:GRCh37:11:72494575:72494637:1 gene:ENSG00000265064 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583200 ncrna:miRNA chromosome:GRCh37:11:72494575:72494637:1 gene:ENSG00000265064 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 72494575	 72494637	+	ENSG00000265064	ENST00000583200	NA	NA	STARD10	NA	chr11:72484575-72504637	inner
CUST_18632_PI429285431	1.9271585	A	2.1354773	A	0.865545280239492	0	lncRNA	20337-1_{1..796}	lnc-SMARCA5-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SMARCA5-2:3	chr4	144902939	144903734	+	lnc-SMARCA5-2	lnc-SMARCA5-2:3	ENSG00000251600	RP11-673E1.1	NA	NA	NA	inter
CUST_5759_PI429285431	3.94689	P	3.8976388	P	1.03472773114946	0	lncRNA	5684-1_{1..441}	"transcript_id ""ENST00000456537.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456537.1"" | genecode_v17"	chr17	 19342456	 19342896	-	ENSG00000235979.3	ENST00000456537.1	AC004448.5	AC004448.5-001	NA	NA	NA	inter
CUST_44112_PI429285431	1.9497412	A	1.5767958	A	1.29499398779684	0	lncRNA	48778-1_{1..835}	"gi|201860287|ref|NR_024135.1| Homo sapiens ghrelin/obestatin prepropeptide (GHRL), transcript variant 11, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|201860287|ref|NR_024135.1| Homo sapiens ghrelin/obestatin prepropeptide (GHRL), transcript variant 11, non-coding RNA"	Chr3	 10327434	 10328268	-	51738	NR_024135.1	NA	NA	NA	NA	NA	inter
CUST_7757_PI429285431	0.89421034	A	0.91974163	A	0.982458729538696	0	lncRNA	9384-1_{1..2112}	lnc-AMPH-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AMPH-2:1	chr7	 38344265	 38346376	-	lnc-AMPH-2	lnc-AMPH-2:1	ENSG00000244971	ENST00000499120	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10"	NA	inter
CUST_50315_PI429285431	0.9068639	A	0.9075844	A	0.999500712142094	0	lncRNA	54034-1_{1..620}	hg19_lincRNAsTranscripts_TCONS_l2_00029552 range=chr9:110189562-110217258 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029552 range=chr9:110189562-110217258 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	110189562	110190181	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16406_PI429285431	1.1934167	A	0.89189464	A	1.2324439703827	0	lncRNA	18102-1_{1..382}	lnc-FER1L6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FER1L6-1:2	chr8	125288355	125288736	+	lnc-FER1L6-1	lnc-FER1L6-1:2	XLOC_006915	linc-TRMT12	NA	NA	NA	inter
CUST_27212_PI429285431	0.90281016	A	0.9070478	A	0.997067001450915	0	lncRNA	28755-1_{1..603}	n324345|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042611|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042611|-1.1895100|-0.3751921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324345|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042611|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042611|-1.1895100|-0.3751921	chr6	148104262	148104864	-	NA	NA	NA	NA	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30"	NA	inter
CUST_48371_PI429285431	4.3757234	P	4.411256	P	0.975671505449102	0	lncRNA	52224-1_{1..632}	hg19_lincRNAsTranscripts_TCONS_l2_00000390 range=chr1:89889199-89891745 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000390 range=chr1:89889199-89891745 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 89889199	 89889830	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21139_PI429285431	5.510658	P	4.8411584	P	1.59052119819635	0	lncRNA	22764-1_{1..397}	lnc-TENC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TENC1-1:1	chr12	 53406509	 53406905	+	lnc-TENC1-1	lnc-TENC1-1:1	ENSG00000257475.1	RP11-983P16.2	EIF4B	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70chr12:53400062-53416570"	NA	inner
CUST_36457_PI429285431	0.89938927	A	0.8989081	A	1.00033357725339	0	lncRNA	37667-1_{1..733}	n344967|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_516|NULL|-1.3580500|-0.2504801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344967|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_516|NULL|-1.3580500|-0.2504801	chr7	115923894	115924626	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33723_PI429285431	1.9991479	A	1.750099	A	1.18842338586268	0	lncRNA	35282-1_{1..2366}	n340501|AK097510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2963|NULL|5.8717900|-0.1568160	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340501|AK097510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2963|NULL|5.8717900|-0.1568160	chr5	 74443061	 74445426	-	NA	NA	NA	NA	ANKRD31	NA	chr5:74433061-74532703	inner
CUST_34828_PI429285431	1.7720321	A	2.517887	A	0.596314407862112	0	lncRNA	36259-1_{1..3000}	n341734|AL833510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4207|NULL|-1.0410200|-0.2168696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341734|AL833510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4207|NULL|-1.0410200|-0.2168696	chr9	100153117	100156116	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29876_PI429285431	5.8003106	P	4.2446127	P	2.9397590234784	0	lncRNA	31639-1_{1..214}	n333880|L33812|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193105_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193105_03|0.1898010|-0.7486484	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333880|L33812|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193105_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193105_03|0.1898010|-0.7486484	chrX	 76931725	 76931938	-	NA	NA	NA	NA	ATRX	NA	chrX:76921725-76947158	inner
CUST_51597_PI429285431	1.9796138	A	2.6542315	A	0.626498213183938	0	lncRNA	55163-1_{1..692}	hg19_lincRNAsTranscripts_TCONS_l2_00010636 range=chr17:21908742-21912660 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010636 range=chr17:21908742-21912660 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 21908742	 21909433	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00318638	0.90231514	A	1.3346626	A	0.741055007038296	0	lncRNA	ENST00000423530	NA	AK091865	NA	NA	XLOC_l2_008434	NA	ENST00000423530	THC2500082	NA	"BROAD Institute lincRNA (XLOC_l2_008434), lincRNA [TCONS_l2_00016080]"	chr2:216506505-216506446	hs|2q35	Agilent_HUMAN_G3V2	ENST00000423530	ENST00000423530	chr2	216506446	216506505	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17724_PI429285431	1.9647521	A	1.5372705	A	1.34488386793234	0	lncRNA	19454-1_{1..428}	lnc-KRT7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KRT7-1:1	chr12	 52617230	 52617657	+	lnc-KRT7-1	lnc-KRT7-1:1	XLOC_009756	linc-KRT7-1	KRT7	NA	chr12:52626954-52627561	inter
CUST_3636_PI429285431	2.8691716	A	3.2687538	P	0.758077788441111	0	lncRNA	3606-1_{1..1002}	"transcript_id ""ENST00000574842.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000574842.1"" | genecode_v17"	chr10	 27532059	 27533060	+	ENSG00000262412.1	ENST00000574842.1	RP11-85G18.6	RP11-85G18.6-001	ACBD5	"hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0,hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0,hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0,hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0,hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0,hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0,hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80chr10:27522059-27531068"	NA	inter
CUST_46826_PI429285431	7.109662	P	7.694968	P	0.666507955190562	0	lncRNA	50966-1_{1..1355}	"gi|365192546|ref|NR_045671.1| Homo sapiens PSMC3 interacting protein (PSMC3IP), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|365192546|ref|NR_045671.1| Homo sapiens PSMC3 interacting protein (PSMC3IP), transcript variant 8, non-coding RNA"	Chr17	 40724328	 40725682	-	29893	NR_045671.1	NA	NA	NA	NA	NA	inter
CUST_768_PI429285431	0.9016764	A	0.9116934	A	0.993080793398506	0	lncRNA	760-1_{1..346}	"transcript_id ""ENST00000450715.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450715.1"" | genecode_v17"	chr2	 14756552	 14756897	+	ENSG00000228505.1	ENST00000450715.1	AC011897.2	AC011897.2-001	FAM84A	NA	chr2:14772810-14780170	inter
LNCA_21_P0010397	6.708509	P	7.342607	P	0.64434354451459	0	lncRNA	TCONS_00029528	NA	NA	NA	NA	XLOC_014172	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014172), lincRNA [TCONS_00029528]"	chr22:23838654-23852142	hs|22q11.23	Agilent_HUMAN_G3V2	TCONS_00029528	TCONS_00029528	chr22	 23838654	 23852142	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37758_PI429285431	0.8904643	A	0.8895012	A	1.00066779292407	0	lncRNA	38854-1_{1..463}	n346265|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1815|NULL|-1.3124800|-0.4304717	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346265|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1815|NULL|-1.3124800|-0.4304717	chr3	148947192	148947654	+	NA	NA	NA	NA	CP	NA	chr3:148937192-148939832	inter
CUST_45439_PI429285431	4.1564574	P	4.6897006	P	0.690999609296068	0	lncRNA	49857-1_{1..576}	"gi|374429561|ref|NR_046240.1| Homo sapiens uncharacterized LOC100506100 (LOC100506100), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|374429561|ref|NR_046240.1| Homo sapiens uncharacterized LOC100506100 (LOC100506100), non-coding RNA"	Chr9	131486741	131487316	+	100506100	NR_046240.1	NA	NA	NA	NA	NA	inter
CUST_29156_PI429285431	5.9051	P	6.4105473	P	0.704441935196985	0	lncRNA	30899-1_{1..283}	n326667|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000009779|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000009779|-1.0469200|-0.3601742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326667|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000009779|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000009779|-1.0469200|-0.3601742	chr1	 27724902	 27725184	+	NA	NA	NA	NA	WASF2	NA	chr1:27730734-27739659	inter
CUST_29998_PI429285431	3.8938634	P	2.7400339	A	2.22503726717905	0	lncRNA	31764-1_{1..272}	n334379|S78088|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216777|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216777|1.2330500|-0.2016831	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334379|S78088|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216777|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216777|1.2330500|-0.2016831	chr12	112919890	112920161	+	NA	NA	NA	NA	PTPN11	NA	chr12:112909890-112934432	inner
CUST_25309_PI429285431	0.88544524	A	2.697671	A	0.284751281540972	0	lncRNA	26839-1_{1..317}	lnc-SLC2A12-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC2A12-3:1	chr6	133777672	133777988	-	lnc-SLC2A12-3	lnc-SLC2A12-3:1	ENSG00000234567.1	RP1-283K11.2	EYA4	"hg19_refFlat_EYA4:range=chr6:133595919-1338499435'pad=0,hg19_refFlat_EYA4:range=chr6:133595919-1338499435'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00chr6:133767672-133787743"	NA	inner
CUST_36867_PI429285431	3.512932	P	2.8401597	A	1.5941333317781	0	lncRNA	38026-1_{1..879}	n345336|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_885|NULL|-1.4247300|-0.3010520	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345336|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_885|NULL|-1.4247300|-0.3010520	chr16	 75614133	 75615011	+	NA	NA	NA	NA	GABARAPL2	NA	chr16:75604133-75611779	inter
CUST_10582_PI429285431	0.8837979	A	0.8933313	A	0.993413735814646	0	lncRNA	12112-1_{1..358}	lnc-PYDC2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PYDC2-2:1	chr3	191477303	191477660	+	lnc-PYDC2-2	lnc-PYDC2-2:1	XLOC_002969	linc-HRASLS-2	NA	NA	NA	inter
CUST_37159_PI429285431	0.893228	A	0.90012693	A	0.995229441555356	0	lncRNA	38276-1_{1..1275}	n345595|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1144|NULL|-1.4312200|-0.1652374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345595|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1144|NULL|-1.4312200|-0.1652374	chr3	129086749	129088023	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7069_PI429285431	8.236273	P	8.134375	P	1.07318440848697	0	lncRNA	7014-1_{1..1851}	"transcript_id ""ENST00000535490.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535490.1"" | genecode_v17"	chrX	 70934224	 70936074	-	ENSG00000215115.5	ENST00000535490.1	CXorf49	CXorf49-201	CXorf49	NA	chrX:70934224-70938135	inter
CUST_36234_PI429285431	2.4372013	A	3.307426	P	0.547061639050595	0	lncRNA	37483-1_{1..861}	n344774|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_323|NULL|-1.3500300|-0.1821398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344774|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_323|NULL|-1.3500300|-0.1821398	chr21	 40974739	 40975599	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10444_PI429285431	8.209246	P	8.53786	P	0.796301124476897	0	lncRNA	11970-1_{1..1030}	lnc-FAIM3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAIM3-1:1	chr1	207097794	207098823	-	lnc-FAIM3-1	lnc-FAIM3-1:1	XLOC_001174	linc-FAIM3	FAIM3	NA	chr1:207087794-207095378	inter
CUST_2947_PI429285431	5.4321094	P	5.472597	P	0.972326266435375	0	lncRNA	2928-1_{1..698}	"transcript_id ""ENST00000495144.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000495144.1"" | genecode_v17"	chr7	149759178	149759875	+	ENSG00000241449.1	ENST00000495144.1	RP11-545G3.1	RP11-545G3.1-002	NA	NA	NA	inter
CUST_20374_PI429285431	7.149557	P	7.8045754	P	0.63506739162658	0	lncRNA	22016-1_{1..352}	lnc-SOX15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SOX15-1:1	chr17	  7487236	  7487587	-	lnc-SOX15-1	lnc-SOX15-1:1	ENSG00000233223.2	AC113189.5	FXR2	"hg19_refFlat_MPDU1:range=chr17:7487181-74908695'pad=0,hg19_refFlat_MPDU1:range=chr17:7487181-74908695'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80chr17:7494548-7497390"	NA	inner
LNCA_21_P0011941	3.3171034	P	3.8049426	P	0.713092334145793	0	lncRNA	TCONS_l2_00014743	NA	NA	NA	NA	XLOC_l2_008163	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008163), lincRNA [TCONS_l2_00014743]"	chr2:103509154-103509095	hs|2q12.1	Agilent_HUMAN_G3V2	TCONS_l2_00014743	TCONS_l2_00014743	chr2	103509095	103509154	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13454_PI429285431	1.6090572	A	1.0140876	A	1.51044075771181	0	lncRNA	15092-1_{1..1334}	lnc-BNIP1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BNIP1-3:5	chr5	172896472	172897805	+	lnc-BNIP1-3	lnc-BNIP1-3:5	XLOC_004640	linc-CPEB4-5	NA	NA	NA	inter
CUST_5882_PI429285431	1.6618829	A	0.90041447	A	1.69521520155032	0	lncRNA	5812-1_{1..695}	"transcript_id ""ENST00000492522.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000492522.1"" | genecode_v17"	chr17	 46782623	 46783317	+	ENSG00000244649.1	ENST00000492522.1	CTD-2377D24.6	CTD-2377D24.6-002	NA	NA	NA	inter
CUST_46498_PI429285431	11.081156	P	10.889635	P	1.14196703086077	0	lncRNA	50692-1_{1..1210}	"gi|84872067|ref|NR_002780.1| Homo sapiens HIG1 hypoxia inducible domain family, member 2B (HIGD2B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|84872067|ref|NR_002780.1| Homo sapiens HIG1 hypoxia inducible domain family, member 2B (HIGD2B), non-coding RNA"	Chr15	 72968123	 72969332	-	123346	NR_002780.1	NA	NA	NA	NA	NA	inter
CUST_30830_PI429285431	0.89817256	A	0.90208334	A	0.997292924623925	0	lncRNA	32618-1_{1..321}	n336780|Z84393|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328231|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328231|2.0217800|-0.0497206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336780|Z84393|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328231|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328231|2.0217800|-0.0497206	chr2	 89442057	 89442377	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28590_PI429285431	7.959408	P	7.92859	P	1.02159119800823	0	lncRNA	30270-1_{1..1899}	n325951|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048466|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048466|-0.7576050|-0.2642023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325951|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048466|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048466|-0.7576050|-0.2642023	chr10	 71096989	 71098887	+	NA	NA	NA	NA	HK1	NA	chr10:71086989-71131535	inner
CUST_28169_PI429285431	0.9181543	A	0.9193559	A	0.999167461100819	0	lncRNA	29795-1_{1..243}	n325447|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323245|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323245|-1.1457800|-0.6141570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325447|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323245|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323245|-1.1457800|-0.6141570	chr2	  7783382	  7783624	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5854_PI429285431	5.811873	P	5.6537976	P	1.11579763606482	0	lncRNA	5783-1_{1..1288}	"transcript_id ""ENST00000592195.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592195.1"" | genecode_v17"	chr17	 40910313	 40911600	-	ENSG00000197291.4	ENST00000592195.1	RAMP2-AS1	RAMP2-AS1-002	RAMP2	NA	chr17:40913212-40915059	inter
CUST_13936_PI429285431	0.89034534	A	1.0618564	A	0.887912206284942	0	lncRNA	15583-1_{1..545}	lnc-MYCN-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYCN-6:2	chr2	 16710607	 16711151	+	lnc-MYCN-6	lnc-MYCN-6:2	XLOC_001369	linc-VSNL1-4	NA	NA	NA	inter
CUST_26381_PI429285431	0.90238565	A	0.9163139	A	0.990392126187062	0	lncRNA	27887-2_{3001..4996}	lnc-TRIM32-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM32-1:1	chr9	119347217	119349212	+	lnc-TRIM32-1	lnc-TRIM32-1:1	ENSG00000230894.1	RP11-67K19.3	ASTN2	NA	chr9:119334217-119358607	inner
CUST_29952_PI429285431	1.068761	A	1.6198207	A	0.682518615132741	0	lncRNA	31718-1_{1..275}	n334158|M96686|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196931|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196931|-0.0618395|-0.0418759	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334158|M96686|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196931|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196931|-0.0618395|-0.0418759	chr9	117815020	117815294	-	NA	NA	NA	NA	TNC	NA	chr9:117805020-117825295	inner
CUST_44428_PI429285431	2.3259647	A	2.3866966	A	0.958777594224584	0	lncRNA	49040-1_{1..2017}	"gi|300068976|ref|NR_033939.1| Homo sapiens uncharacterized LOC100129858 (LOC100129858), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300068976|ref|NR_033939.1| Homo sapiens uncharacterized LOC100129858 (LOC100129858), non-coding RNA"	Chr4	141204880	141206896	-	100129858	NR_033939.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001434	0.9076515	A	1.2479151	A	0.789896973760338	0	lncRNA	TCONS_00001323	NA	NA	NA	NA	XLOC_000605	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000605), lincRNA [TCONS_00001323]"	chr1:230451400-230451459	hs|1q42.13	Agilent_HUMAN_G3V2	TCONS_00001323	TCONS_00001323	chr1	230451400	230451459	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43619_PI429285431	12.321945	P	12.436456	P	0.923695343261758	0	lncRNA	48380-2_{3001..3141}	"gi|387849025|ref|NR_048578.1| Homo sapiens ADAM metallopeptidase domain 15 (ADAM15), transcript variant 11, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387849025|ref|NR_048578.1| Homo sapiens ADAM metallopeptidase domain 15 (ADAM15), transcript variant 11, non-coding RNA"	Chr1	155026748	155026888	+	8751	NR_048578.1	NA	NA	NA	NA	NA	inter
CUST_4054_PI429285431	0.91175795	A	0.908248	A	1.00243587387823	0	lncRNA	4016-1_{1..712}	"transcript_id ""ENST00000438416.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438416.2"" | genecode_v17"	chr11	 94371204	 94371915	+	ENSG00000233536.2	ENST00000438416.2	RP11-867G2.5	RP11-867G2.5-001	NA	NA	NA	inter
CUST_30487_PI429285431	14.208511	P	14.259895	P	0.96501013536838	0	lncRNA	32267-1_{1..318}	n335640|CR607317|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000286512|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000286512|-1.1567100|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335640|CR607317|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000286512|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000286512|-1.1567100|-1.0000000	chr3	127391327	127391644	+	NA	NA	NA	NA	PODXL2	NA	chr3:127381327-127391652	inner
CUST_26302_PI429285431	0.8858619	A	1.248446	A	0.777770219097872	0	lncRNA	27808-1_{1..548}	lnc-AC073343.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC073343.1-1:2	chr7	  6704675	  6705222	+	lnc-AC073343.1-1	lnc-AC073343.1-1:2	ENSG00000228010.1	AC073343.13	ZNF12	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.00chr7:6712856-6715152"	NA	inter
CUST_36330_PI429285431	1.7542813	A	1.9895383	A	0.849533650731854	0	lncRNA	37561-1_{1..2302}	n344856|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_405|NULL|-1.6624000|-0.2370570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344856|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_405|NULL|-1.6624000|-0.2370570	chr5	148804755	148807056	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010166	5.8407784	P	6.0116577	P	0.88830111054929	0	lncRNA	XR_109692	XR_109692	XR_109692	NA	Hs.686508	LOC100506021	uncharacterized LOC100506021	ENST00000436359	THC2681432	NA	"PREDICTED: Homo sapiens hypothetical LOC100506021 (LOC100506021), miscRNA [XR_109692]"	chr21:44887119-44887178	hs|21q22.3	Agilent_HUMAN_G3V2	XR_109692	XR_109692	chr21	 44887119	 44887178	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47808_PI429285431	16.745527	P	17.027794	P	0.822297871717813	0	lncRNA	51726-2_{3001..6000}	"gi|374429547|ref|NR_046235.1| Homo sapiens RNA, 45S pre-ribosomal 5 (RNA45S5), ribosomal RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ensembl.GRCh37.72,ncbi,"	">gi|374429547|ref|NR_046235.1| Homo sapiens RNA, 45S pre-ribosomal 5 (RNA45S5), ribosomal RNA"	NA	NA	NA	NA	NA	NR_046235.1	NA	NA	NA	NA	NA	Unknown
CUST_51141_PI429285431	0.8938879	A	0.89264756	A	1.00086010785473	0	lncRNA	54768-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00007750 range=chr14:60385849-60531120 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007750 range=chr14:60385849-60531120 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 60385849	 60388848	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50738_PI429285431	0.91015726	A	1.2357004	A	0.797997902771532	0	lncRNA	54406-1_{1..1262}	hg19_lincRNAsTranscripts_TCONS_l2_00003297 range=chr10:124578418-124586370 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003297 range=chr10:124578418-124586370 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	124578418	124579679	+	NA	NA	NA	NA	CUZD1	NA	chr10:124591671-124596370	inter
CUST_52005_PI429285431	2.6277466	A	2.7961478	A	0.889828245927869	0	lncRNA	55538-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017133 range=chr21:15215452-15221907 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017133 range=chr21:15215452-15221907 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 15215452	 15218451	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26563_PI429285431	3.0091214	A	3.3841143	P	0.771109207589062	0	lncRNA	28068-1_{1..3000}	lnc-CALML5-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,UCSC,"	>lnc-CALML5-2:4	chr10	  5563879	  5566878	-	lnc-CALML5-2	lnc-CALML5-2:4	ENSG00000205488.3	RP11-116G8.4	CALML3	NA	chr10:5566924-5568225	inter
CUST_40386_PI429285431	0.88686717	A	2.8013895	P	0.265259747142981	0	lncRNA	41180-1_{1..3000}	n409235|NR_033399|lncRNA|Homosapiens||RefGeneNoncode|NR_033399||12.8804000|-0.1168847	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409235|NR_033399|lncRNA|Homosapiens||RefGeneNoncode|NR_033399||12.8804000|-0.1168847	chr12	  9570286	  9573285	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44618_PI429285431	0.8950298	A	0.90468335	A	0.993331006140722	0	lncRNA	49187-1_{1..3000}	"gi|323668272|ref|NR_037897.1| Homo sapiens uncharacterized LOC386627 (FLJ38109), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|323668272|ref|NR_037897.1| Homo sapiens uncharacterized LOC386627 (FLJ38109), non-coding RNA"	Chr5	153769329	153772328	-	386627	NR_037897.1	NA	NA	NA	NA	NA	inter
CUST_10190_PI429285431	2.4366343	A	1.6387626	A	1.7385345040699	0	lncRNA	11715-1_{1..236}	lnc-DHX37-10:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-10:10	chr12	127230807	127231042	-	lnc-DHX37-10	lnc-DHX37-10:10	XLOC_010244	linc-DHX37-4	NA	NA	NA	inter
CUST_15465_PI429285431	0.9040644	A	0.9104252	A	0.995600734656094	0	lncRNA	17153-1_{1..870}	lnc-PRKCQ-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PRKCQ-2:1	chr10	  6821073	  6821942	-	lnc-PRKCQ-2	lnc-PRKCQ-2:1	XLOC_008720	linc-PRKCQ-2	NA	NA	NA	inter
LNCA_21_P0014946	0.89088196	A	2.3687932	A	0.359008214505811	0	lncRNA	XR_133549	XR_133549	XR_133549	NA	NA	FLJ20518	"FSHD region gene 2 family, member C pseudogene"	NA	NA	NA	"PREDICTED: Homo sapiens FSHD region gene 2 family, member C pseudogene (FLJ20518), miscRNA [XR_133549]"	chr9:066454978-066455037	hs|9q13	Agilent_HUMAN_G3V2	XR_133549	XR_133549	chr9	 66454978	 66455037	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11601_PI429285431	6.0764766	P	6.387273	P	0.806196597771339	0	lncRNA	13181-1_{1..2121}	lnc-OPA1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OPA1-2:1	chr3	193559841	193561961	+	lnc-OPA1-2	lnc-OPA1-2:1	XLOC_002973	linc-HES1-3	NA	NA	NA	inter
CUST_48301_PI429285431	0.89508206	A	0.8906215	A	1.00309660920716	0	lncRNA	52159-1_{1..2314}	hg19_lincRNAsTranscripts_TCONS_l2_00000128 range=chr1:16974161-16977423 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000128 range=chr1:16974161-16977423 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16974161	 16976474	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29933_PI429285431	5.8524485	P	5.9369144	P	0.943133628710436	0	lncRNA	31697-1_{1..219}	n334117|M60516|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195950|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195950|0.3822690|-0.1593892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334117|M60516|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195950|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195950|0.3822690|-0.1593892	chr5	141993572	141993790	-	NA	NA	NA	NA	FGF1	NA	chr5:141983572-142075587	inner
CUST_22875_PI429285431	1.2210138	A	1.8175055	A	0.66136027641898	0	lncRNA	24452-1_{1..2032}	lnc-SRRD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SRRD-1:1	chr22	 26908503	 26910534	+	lnc-SRRD-1	lnc-SRRD-1:1	ENSG00000261188.1	CTA-445C9.14	TFIP11	NA	chr22:26898503-26908437	inter
CUST_2941_PI429285431	0.91346884	A	0.9227264	A	0.993603692413303	0	lncRNA	2922-1_{1..1835}	"transcript_id ""ENST00000447529.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447529.1"" | genecode_v17"	chr7	137003339	137005173	+	ENSG00000231114.1	ENST00000447529.1	AC078842.4	AC078842.4-001	PTN	NA	chr7:136993339-137021700	inner
CUST_34359_PI429285431	6.2691064	P	4.1792383	P	4.25709150269168	0	lncRNA	35847-1_{1..1167}	n341228|AK130653|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3696|NULL|-1.2657100|-0.4589647	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341228|AK130653|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3696|NULL|-1.2657100|-0.4589647	chr7	 40135563	 40136729	+	NA	NA	NA	NA	CDK13	NA	chr7:40125563-40136733	inner
LNCA_19_P00322984	0.8906516	A	0.8882911	A	1.00163751318258	0	lncRNA	THC2573057	NA	NA	NA	NA	XLOC_006037	NA	NA	THC2573057	NA	"BROAD Institute lincRNA (XLOC_006037), lincRNA [TCONS_00012989]"	chr7:030590254-030590313	hs|7p14.3	Agilent_HUMAN_G3V2	THC2573057	THC2573057	chr7	 30590254	 30590313	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17039_PI429285431	2.960332	A	3.61349	P	0.635886858975239	0	lncRNA	18749-2_{3001..3283}	lnc-BNIP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BNIP1-3:1	chr5	172899472	172899754	+	lnc-BNIP1-3	lnc-BNIP1-3:1	XLOC_004640	linc-CPEB4-5	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-58.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-64.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20"	NA	inter
CUST_2397_PI429285431	1.433752	A	1.2729945	A	1.11787393376536	0	lncRNA	2389-1_{1..463}	"transcript_id ""ENST00000523605.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523605.1"" | genecode_v17"	chr5	151596635	151597097	+	ENSG00000254226.1	ENST00000523605.1	CTB-12O2.1	CTB-12O2.1-003	NA	NA	NA	inter
LNCA_21_P0011712	13.639289	P	13.886339	P	0.842617626095507	0	lncRNA	TCONS_l2_00012696	NA	NA	NA	NA	XLOC_l2_006815	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006815), lincRNA [TCONS_l2_00012696]"	chr19:54279028-54279087	hs|19q13.42	Agilent_HUMAN_G3V2	TCONS_l2_00012696	TCONS_l2_00012696	chr19	 54279028	 54279087	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13023_PI429285431	2.8360581	A	3.381385	P	0.685236117373584	0	lncRNA	14651-1_{1..333}	lnc-COL1A1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL1A1-4:1	chr17	 48365101	 48365433	-	lnc-COL1A1-4	lnc-COL1A1-4:1	XLOC_012515	linc-COL1A1-2	TMEM92	NA	chr17:48355101-48358846	inter
CUST_40148_PI429285431	0.8901926	A	0.9033984	A	0.990888203287055	0	lncRNA	40986-1_{1..1964}	n407791|NR_027317|lncRNA|Homosapiens||RefGeneNoncode|NR_027317||5.1954000|-0.2540280	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407791|NR_027317|lncRNA|Homosapiens||RefGeneNoncode|NR_027317||5.1954000|-0.2540280	chr3	185431039	185433002	+	NA	NA	NA	NA	IGF2BP2	NA	chr3:185421039-185445955	inner
CUST_33932_PI429285431	4.5102663	P	3.5263257	P	1.97786039675296	0	lncRNA	35473-1_{1..2954}	n340730|AK055998|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3193|NULL|4.9717300|-0.2241135	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340730|AK055998|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3193|NULL|4.9717300|-0.2241135	chr5	169291312	169294265	-	NA	NA	NA	NA	DOCK2	NA	chr5:169281312-169417744	inner
CUST_46899_PI429285431	6.3538046	P	6.869092	P	0.699653540582431	0	lncRNA	51020-1_{1..1534}	"gi|397139657|ref|XR_158919.1| PREDICTED: Homo sapiens uncharacterized LOC100996660 (LOC100996660), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139657|ref|XR_158919.1| PREDICTED: Homo sapiens uncharacterized LOC100996660 (LOC100996660), misc_RNA"	Chr17	 58203898	 58205431	-	100996660	XR_158919.1	NA	NA	NA	NA	NA	inter
CUST_13294_PI429285431	2.0499878	A	2.5435946	A	0.710247227560604	0	lncRNA	14927-1_{1..610}	lnc-ERI1-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERI1-2:7	chr8	  9015531	  9016140	+	lnc-ERI1-2	lnc-ERI1-2:7	XLOC_006704	linc-TNKS-3	PPP1R3B	NA	chr8:9005531-9009152	inter
CUST_26657_PI429285431	0.9006627	A	0.9098408	A	0.993658419102889	0	lncRNA	28157-1_{1..498}	lnc-POTEM-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POTEM-10:1	chr14	 19372736	 19373233	-	lnc-POTEM-10	lnc-POTEM-10:1	ENSG00000257959.1	RP11-536C10.4	OR11H12	NA	chr14:19362736-19378574	inter
CUST_28793_PI429285431	0.9068515	A	0.90965873	A	0.998056068327687	0	lncRNA	30501-1_{1..1530}	n326200|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092057|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092057|0.5182910|-0.2389779	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326200|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092057|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092057|0.5182910|-0.2389779	chr1	223954928	223956457	+	NA	NA	NA	NA	TP53BP2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-24.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr1:223967595-224016568"	NA	inner
CUST_45749_PI429285431	1.391061	A	1.0704911	A	1.24882376756048	0	lncRNA	50098-1_{1..463}	"gi|383792162|ref|NR_047550.1| Homo sapiens uncharacterized LOC100506082 (LOC100506082), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|383792162|ref|NR_047550.1| Homo sapiens uncharacterized LOC100506082 (LOC100506082), non-coding RNA"	Chr11	  4208382	  4208844	+	100506082	NR_047550.1	NA	NA	NA	NA	NA	inter
CUST_2529_PI429285431	7.6778054	P	8.208887	P	0.692035714818231	0	lncRNA	2517-1_{1..169}	"transcript_id ""ENST00000593368.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593368.1"" | genecode_v17"	chr6	 41732030	 41732198	-	ENSG00000269387.1	ENST00000593368.1	RP11-298J23.8	RP11-298J23.8-001	FRS3	NA	chr6:41737914-41742198	inter
CUST_8069_PI429285431	2.544427	A	2.9606683	A	0.749374452711218	0	lncRNA	9676-1_{1..2131}	lnc-ANKRD54-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD54-1:1	chr22	 38201624	 38203754	-	lnc-ANKRD54-1	lnc-ANKRD54-1:1	ENSG00000235456	ENST00000455466	GCAT	"hg19_refFlat_H1F0:range=chr22:38201552-382021365'pad=0,hg19_refFlat_H1F0:range=chr22:38201552-382021365'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.20chr22:38203912-38213183"	NA	inner
LNCA_21_P0014769	0.9008118	A	2.0232272	A	0.459324167956149	0	lncRNA	XR_132541	XR_132541	XR_132541	NA	NA	LOC100289298	NA	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100289298 (LOC100289298), miscRNA [XR_132541]"	chr7:99998947-99999540	hs|7q22.1	Agilent_HUMAN_G3V2	XR_132541	XR_132541	chr7	 99998947	 99999540	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49609_PI429285431	1.2972132	A	1.4441745	A	0.903150736661052	0	lncRNA	53399-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00025057 range=chr6:170484940-170489998 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025057 range=chr6:170484940-170489998 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	170484940	170487939	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012843	0.90157306	A	0.89777106	A	1.0026388211561	0	lncRNA	ENST00000514186	NA	NA	NA	NA	XLOC_l2_011728	NA	ENST00000514186	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011728), lincRNA [TCONS_l2_00022487]"	chr5:116751205-116751263	hs|5q23.1	Agilent_HUMAN_G3V2	ENST00000514186	ENST00000514186	chr5	116751205	116751263	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18443_PI429285431	2.6070096	A	3.0452194	P	0.738049866143864	0	lncRNA	20167-1_{1..1584}	lnc-ZNF100-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF100-2:1	chr19	 21769665	 21771248	-	lnc-ZNF100-2	lnc-ZNF100-2:1	ENSG00000249473	AC123912.1	NA	NA	NA	inter
CUST_8640_PI429285431	6.209882	P	6.633376	P	0.745616659519625	0	lncRNA	10193-1_{1..1139}	lnc-MTHFD2L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTHFD2L-1:1	chr4	 74964863	 74966001	+	lnc-MTHFD2L-1	lnc-MTHFD2L-1:1	ENSG00000245879	ENST00000500608	CXCL2	"hg19_refFlat_CXCL3:range=chr4:74902979-749043285'pad=0,hg19_refFlat_CXCL3:range=chr4:74902979-749043285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CXCL1:range=chr4:74735188-747362535'pad=0,hg19_refFlat_CXCL1:range=chr4:74735188-747362535'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_CXCL2:range=chr4:74963473-749648375'pad=0,hg19_refFlat_CXCL2:range=chr4:74963473-749648375'pad=0 3'pad=0 strand=- repeatMasking=none,-95.70chr4:74962752-74964997"	NA	inner
CUST_42726_PI429285431	3.0836596	A	3.2370281	P	0.899148618015805	0	lncRNA	45666-1_{1..112}	ENST00000408571 ncrna:snoRNA chromosome:GRCh37:2:183928963:183929074:-1 gene:ENSG00000221498 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408571 ncrna:snoRNA chromosome:GRCh37:2:183928963:183929074:-1 gene:ENSG00000221498 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	183928963	183929074	-	ENSG00000221498	ENST00000408571	NA	NA	DUSP19	NA	chr2:183935571-183939074	inter
CUST_17600_PI429285431	2.6283	A	2.2119927	A	1.33450739499087	0	lncRNA	19326-1_{1..275}	lnc-SLC4A3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC4A3-5:1	chr2	220878491	220878765	+	lnc-SLC4A3-5	lnc-SLC4A3-5:1	XLOC_001871	linc-CCDC140-8	NA	"hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0,hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00"	NA	inter
CUST_11034_PI429285431	3.965603	P	4.7689457	P	0.573019960653098	0	lncRNA	12580-1_{1..355}	lnc-ROPN1B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ROPN1B-4:1	chr3	125505668	125506022	+	lnc-ROPN1B-4	lnc-ROPN1B-4:1	XLOC_002793	linc-ROPN1B-1	NA	NA	NA	inter
CUST_186_PI429201921	2.6753633	A	3.027432	A	0.78345987831955	0	lncRNA	153-1_{1..3000}	TC0Y000337.hg.1	 TCONS_l2_00031060-XLOC_l2_015960 // Broad TUCP // linc-CDY1B chrY:-:26356114-26360978 // chrY // 100 // 100 // 0 // --- // 0///TCONS_l2_00031059-XLOC_l2_015960 // Broad TUCP // linc-CDY1B chrY:-:26356113-26360978 // chrY // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:26356113-26360978	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031059-XLOC_l2_015960	linc-CDY1B	chrY	 26356113	 26360978	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20118_PI429285431	1.4751029	A	2.4782987	A	0.498893645948072	0	lncRNA	21766-1_{1..597}	lnc-MRPS5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPS5-1:1	chr2	 95718788	 95719384	-	lnc-MRPS5-1	lnc-MRPS5-1:1	ENSG00000231062.1	AC103563.9	MAL	NA	chr2:95708788-95719735	inner
LNCA_21_P0003952	0.9018172	A	0.89789104	A	1.00272511312317	0	lncRNA	ENST00000503415	NA	NA	NA	NA	XLOC_004264	NA	ENST00000503415	NA	NA	"BROAD Institute lincRNA (XLOC_004264), lincRNA [TCONS_00009332]"	chr5:4143702-4143761	hs|5p15.33	Agilent_HUMAN_G3V2	ENST00000503415	ENST00000503415	chr5	  4143702	  4143761	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16571_PI429285431	4.7120237	P	4.8594475	P	0.902861250486487	0	lncRNA	18272-1_{1..1301}	lnc-WDR60-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR60-3:1	chr7	158769359	158770659	+	lnc-WDR60-3	lnc-WDR60-3:1	XLOC_006321	TCONS_00013659	NA	NA	NA	inter
CUST_39502_PI429285431	4.2765813	P	5.0139303	P	0.599840567182483	0	lncRNA	40449-1_{1..3000}	n387238|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ait.1||6.0159900|-0.1058462	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387238|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ait.1||6.0159900|-0.1058462	chr22	 22974027	 22977026	-	NA	NA	NA	NA	GGTLC2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0,hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-55.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr22:22988782-22990368"	NA	inter
CUST_24451_PI429285431	3.5169573	P	3.7959757	P	0.824151573732761	0	lncRNA	26004-1_{1..717}	lnc-NT5C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-NT5C-2:1	chr17	 73142547	 73143263	-	lnc-NT5C-2	lnc-NT5C-2:1	ENSG00000263786.1	RP11-649A18.4	HN1	NA	chr17:73132547-73150775	inner
CUST_17269_PI429285431	1.0099201	A	1.1135674	A	0.930677155339413	0	lncRNA	18987-1_{1..412}	lnc-TMEM132B-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132B-3:3	chr12	126585235	126585646	+	lnc-TMEM132B-3	lnc-TMEM132B-3:3	XLOC_009935	linc-TMEM132C-14	NA	NA	NA	inter
CUST_22494_PI429285431	8.230211	P	8.133343	P	1.06944923369352	0	lncRNA	24081-1_{1..520}	lnc-SLC39A11-1:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC39A11-1:18	chr17	 70418926	 70419445	-	lnc-SLC39A11-1	lnc-SLC39A11-1:18	ENSG00000227036.2	LINC00511	NA	NA	NA	inter
CUST_38052_PI429285431	0.9174627	A	0.92238533	A	0.996593707516758	0	lncRNA	39130-1_{1..1719}	n377624|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030011||-0.1826500|-0.2183499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377624|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030011||-0.1826500|-0.2183499	chr6	  2500481	  2502199	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19551_PI429285431	6.285117	P	6.6876855	P	0.756510231729029	0	lncRNA	21207-1_{1..2571}	lnc-GPS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPS2-1:1	chr17	  7222369	  7224939	-	lnc-GPS2-1	lnc-GPS2-1:1	ENSG00000261915.1	RP11-542C16.2	NEURL4	NA	chr17:7218951-7232493	inner
CUST_28468_PI429285431	1.3068333	A	1.1872671	A	1.08640814433456	0	lncRNA	30134-1_{1..405}	n325802|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044106|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044106|-1.1154300|-0.1762929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325802|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044106|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044106|-1.1154300|-0.1762929	chr13	 20706706	 20707110	+	NA	NA	NA	NA	GJA3	NA	chr13:20712394-20717343	inter
CUST_43698_PI429285431	6.497634	P	6.924119	P	0.744072445949797	0	lncRNA	48447-1_{1..764}	"gi|375268763|ref|NR_046325.1| Homo sapiens KDM5B antisense RNA 1 (head to head) (KDM5B-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|375268763|ref|NR_046325.1| Homo sapiens KDM5B antisense RNA 1 (head to head) (KDM5B-AS1), transcript variant 1, non-coding RNA"	Chr1	202780074	202780837	+	100506696	NR_046325.1	NA	NA	NA	NA	NA	inter
CUST_26230_PI429285431	3.3388467	A	3.5192847	P	0.882435049692001	0	lncRNA	27737-1_{1..1991}	lnc-AMELY-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AMELY-8:1	chrY	  7689944	  7691934	-	lnc-AMELY-8	lnc-AMELY-8:1	ENSG00000234795.3	AC007275.2	NA	NA	NA	inter
LNCA_21_P0003717	6.0459447	P	5.9458256	P	1.07186194519191	0	lncRNA	TCONS_00008419	NA	NA	NA	NA	XLOC_003874	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003874), lincRNA [TCONS_00008419]"	chr4:8161535-8161476	hs|4p16.1	Agilent_HUMAN_G3V2	TCONS_00008419	TCONS_00008419	chr4	  8161476	  8161535	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19658_PI429285431	1.1407671	A	1.4362676	A	0.814789616418275	0	lncRNA	21314-1_{1..689}	lnc-RP11-305N23.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-305N23.1.1-1:1	chr11	119280211	119280899	+	lnc-RP11-305N23.1.1-1	lnc-RP11-305N23.1.1-1:1	ENSG00000245248.3	RP11-305N23.1	THY1	NA	chr11:119288655-119290472	inter
CUST_46000_PI429285431	3.3199563	P	2.074047	A	2.37167989029795	0	lncRNA	50286-2_{3001..3385}	"gi|238550108|ref|NR_027716.1| Homo sapiens H2A histone family, member J (H2AFJ), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|238550108|ref|NR_027716.1| Homo sapiens H2A histone family, member J (H2AFJ), transcript variant 2, non-coding RNA"	Chr12	 14930270	 14930654	+	55766	NR_027716.1	NA	NA	NA	NA	NA	inter
CUST_28756_PI429285431	11.26313	P	11.939036	P	0.625939011577323	0	lncRNA	30460-1_{1..624}	n326156|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096159|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096159|-1.2232200|-0.3381246	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326156|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096159|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096159|-1.2232200|-0.3381246	chr1	241259436	241260059	-	NA	NA	NA	NA	RGS7	NA	chr1:241249436-241287750	inner
CUST_39712_PI429285431	5.548649	P	5.900174	P	0.783755191881818	0	lncRNA	40647-1_{1..1265}	n405616|NR_002777|lncRNA|Homosapiens||RefGeneNoncode|NR_002777||-0.2463670|-0.3893351	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405616|NR_002777|lncRNA|Homosapiens||RefGeneNoncode|NR_002777||-0.2463670|-0.3893351	chr11	  5664411	  5665675	+	NA	NA	NA	NA	TRIM6-TRIM34	"hg19_refFlat_TRIM5:range=chr11:5686039-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5686039-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TRIM5:range=chr11:5686737-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5686737-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20chr11:5654411-5665628"	NA	inner
CUST_5315_PI429285431	0.918289	A	0.90742856	A	1.00755628911327	0	lncRNA	5255-1_{1..3000}	"transcript_id ""ENST00000557481.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557481.2"" | genecode_v17"	chr15	 94261771	 94264770	-	ENSG00000258754.3	ENST00000557481.2	CTD-3049M7.1	CTD-3049M7.1-001	NA	NA	NA	inter
CUST_39082_PI429285431	0.89938134	A	0.90187657	A	0.998271933190459	0	lncRNA	40058-1_{1..2007}	n385610|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ant.2||1.4815800|-0.3164516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385610|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ant.2||1.4815800|-0.3164516	chr9	 86678357	 86680363	+	NA	NA	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_304_PI429201921	5.383277	P	5.0882463	P	1.22691108517578	0	lncRNA	208-3_{6001..7186}	TC22000983.hg.1	TCONS_00029333-XLOC_014161 // Rinn lincRNAs // linc-AIFM3 chr22:+:21311690-21318877 // chr22 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr22:+:21311690-21318877	NA	Affy_HUMAN_HTA2.0	TCONS_00029333-XLOC_014161	linc-AIFM3	chr22	 21311690	 21318877	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_138_PI429285431	6.45715	P	6.568589	P	0.925664307783149	0	lncRNA	130-1_{1..3000}	"transcript_id ""ENST00000445317.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000445317.1"" | genecode_v17"	chr1	  2976181	  2979180	-	ENSG00000177133.5	ENST00000445317.1	RP1-163G9.1	RP1-163G9.1-002	PRDM16	NA	chr1:2985742-2995001	inter
CUST_23773_PI429285431	3.8897583	P	4.1194663	P	0.852807481662989	0	lncRNA	25336-1_{1..439}	lnc-YES1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YES1-1:3	chr18	   904883	   905321	-	lnc-YES1-1	lnc-YES1-1:3	ENSG00000265179.1	RP11-672L10.2	ADCYAP1	NA	chr18:904944-912173	inner
LNCA_21_P0001358	0.9118378	A	0.9234111	A	0.992010090112345	0	lncRNA	TCONS_00001084	NA	NA	NA	NA	XLOC_000327	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000327), lincRNA [TCONS_00001084]"	chr1:106581135-106581194	hs|1p21.1	Agilent_HUMAN_G3V2	TCONS_00001084	TCONS_00001084	chr1	106581135	106581194	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7104_PI429285431	0.92173785	A	1.9116552	A	0.503506619398728	0	lncRNA	7039-1_{1..1135}	"transcript_id ""ENST00000443247.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443247.1"" | genecode_v17"	chrX	 84465712	 84466846	+	ENSG00000235461.1	ENST00000443247.1	RP5-928E24.2	RP5-928E24.2-001	NA	NA	NA	inter
CUST_4872_PI429285431	1.2513832	A	1.4956923	A	0.844219992398443	0	lncRNA	4815-1_{1..1206}	"transcript_id ""ENST00000556874.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556874.1"" | genecode_v17"	chr14	 66697051	 66698256	-	ENSG00000258561.1	ENST00000556874.1	RP11-72M17.1	RP11-72M17.1-001	GPHN	NA	chr14:66974125-66986112	inner
CUST_21894_PI429285431	3.923006	P	4.0010076	P	0.947369019932821	0	lncRNA	23503-1_{1..335}	lnc-ELAC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ELAC2-1:1	chr17	 12893851	 12894185	-	lnc-ELAC2-1	lnc-ELAC2-1:1	ENSG00000263707.1	RP11-597M12.1	ARHGAP44	NA	chr17:12883851-12894960	inner
CUST_24533_PI429285431	0.8922412	A	1.0866363	A	0.873939248489728	0	lncRNA	26083-1_{1..1989}	lnc-MATN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MATN2-1:1	chr8	 99055963	 99057951	+	lnc-MATN2-1	lnc-MATN2-1:1	ENSG00000245970.2	KB-1208A12.3	MATN2	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RPL30:range=chr8:99054029-990575955'pad=0,hg19_refFlat_RPL30:range=chr8:99054029-990575955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40chr8:99045963-99048948"	NA	inner
CUST_20779_PI429285431	2.378767	A	2.8837075	A	0.704689439954866	0	lncRNA	22412-1_{1..673}	lnc-MLL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MLL3-1:1	chr7	151818649	151819321	-	lnc-MLL3-1	lnc-MLL3-1:1	ENSG00000229591.1	RP5-981O7.2	MLL3	"hg19_refFlat_GALNT11:range=chr7:151791313-1518187625'pad=0,hg19_refFlat_GALNT11:range=chr7:151791313-1518187625'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60chr7:151825922-151828802"	NA	inner
LNCA_21_P0011820	0.90198416	A	0.94315714	A	0.971864453864787	0	lncRNA	TCONS_l2_00013803	NA	NA	NA	NA	XLOC_l2_007435	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007435), lincRNA [TCONS_l2_00013803]"	chr2:96199634-96199693	hs|2q11.1	Agilent_HUMAN_G3V2	TCONS_l2_00013803	TCONS_l2_00013803	chr2	 96199634	 96199693	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007136	1.0214772	A	0.90598655	A	1.08334342003154	0	lncRNA	AK307308	NA	AK307308	NA	NA	XLOC_009562	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009562), lincRNA [TCONS_00019126]"	chr11:115628475-115628416	hs|11q23.3	Agilent_HUMAN_G3V2	AK307308	AK307308	chr11	115628416	115628475	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9492_PI429285431	1.5216446	A	1.7617898	A	0.846660095993815	0	lncRNA	10999-1_{1..999}	lnc-PERP-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PERP-3:1	chr6	138148058	138149056	-	lnc-PERP-3	lnc-PERP-3:1	XLOC_005849	linc-OLIG3-1	NA	NA	NA	inter
CUST_28315_PI429285431	7.2628484	P	7.6854153	P	0.746095959261456	0	lncRNA	29960-1_{1..503}	n325620|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045943|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045943|0.7969440|-0.2053165	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325620|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045943|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045943|0.7969440|-0.2053165	chr13	113529483	113529985	+	NA	NA	NA	NA	ATP11A	NA	chr13:113519483-113540438	inner
LNCA_21_P0004451	0.8996963	A	0.9033942	A	0.997440093204959	0	lncRNA	TCONS_00010517	NA	NA	NA	NA	XLOC_005034	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005034), lincRNA [TCONS_00010517]"	chr5:141202539-141202480	hs|5q31.3	Agilent_HUMAN_G3V2	TCONS_00010517	TCONS_00010517	chr5	141202480	141202539	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31369_PI429285431	0.8856195	A	0.88819814	A	0.998214219361404	0	lncRNA	33148-2_{3001..3676}	n337836|AK127862|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|219|NULL|-1.1084700|-0.3797048	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337836|AK127862|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|219|NULL|-1.1084700|-0.3797048	chrX	112288954	112289629	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50947_PI429285431	4.832353	P	4.3704367	P	1.37737013398222	0	lncRNA	54588-1_{1..246}	hg19_lincRNAsTranscripts_TCONS_l2_00006273 range=chr12:56849484-56850013 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006273 range=chr12:56849484-56850013 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 56849484	 56849729	-	NA	NA	NA	NA	TIMELESS	NA	chr12:56839484-56843200	inter
CUST_8684_PI429285431	0.90033907	A	0.90732664	A	0.995168295973511	0	lncRNA	10232-1_{1..873}	lnc-RAB23-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RAB23-2:1	chr6	 57036872	 57037744	-	lnc-RAB23-2	lnc-RAB23-2:1	ENSG00000226803	RP11-203B9.4	ZNF451	NA	chr6:57026872-57035098	inner
CUST_47636_PI429285431	0.91953194	A	0.9291335	A	0.993366803178962	0	lncRNA	51625-2_{3001..4612}	"gi|300116206|ref|NR_033974.1| Homo sapiens uncharacterized LOC401613 (DKFZp686D0853), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300116206|ref|NR_033974.1| Homo sapiens uncharacterized LOC401613 (DKFZp686D0853), non-coding RNA"	ChrX	110757890	110759501	+	401613	NR_033974.1	NA	NA	NA	NA	NA	inter
CUST_31485_PI429285431	0.8834243	A	0.88545316	A	0.998594689785739	0	lncRNA	33249-1_{1..1811}	n337963|BC040313|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|348|NULL|1.5926400|-0.2854271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n337963|BC040313|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|348|NULL|1.5926400|-0.2854271	chr1	 55681080	 55682890	+	NA	NA	NA	NA	USP24	NA	chr1:55671080-55681039	inter
CUST_4040_PI429285431	0.89937556	A	0.9192926	A	0.986289417946513	0	lncRNA	4002-1_{1..178}	"transcript_id ""ENST00000530126.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530126.1"" | genecode_v17"	chr11	 85903829	 85904006	-	ENSG00000254699.1	ENST00000530126.1	RP11-12D16.2	RP11-12D16.2-001	NA	NA	NA	inter
CUST_5578_PI429285431	0.8900044	A	0.8992545	A	0.993608830230027	0	lncRNA	5507-1_{1..556}	"transcript_id ""ENST00000561595.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561595.1"" | genecode_v17"	chr16	 63402748	 63403303	+	ENSG00000261743.1	ENST00000561595.1	RP11-2K6.2	RP11-2K6.2-001	NA	NA	NA	inter
CUST_26449_PI429285431	2.2142513	A	2.7864687	A	0.672582245073142	0	lncRNA	27957-1_{1..669}	lnc-FAM35B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM35B-1:1	chr10	 46966479	 46967147	+	lnc-FAM35B-1	lnc-FAM35B-1:1	ENSG00000231187.2	RP11-38L15.3	SYT15	NA	chr10:46956479-46970601	inner
CUST_26628_PI429285431	0.8850827	A	0.8888234	A	0.997410502888542	0	lncRNA	28131-1_{1..672}	lnc-P2RY10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-P2RY10-1:1	chrX	 78010288	 78010959	+	lnc-P2RY10-1	lnc-P2RY10-1:1	ENSG00000250534.1	RP11-475D8.1	LPAR4	NA	chrX:78003206-78012588	inner
CUST_42653_PI429285431	9.243618	P	9.368644	P	0.916987517265641	0	lncRNA	45547-1_{1..139}	ENST00000384574 ncrna:snoRNA chromosome:GRCh37:11:93465527:93465665:-1 gene:ENSG00000207304 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384574 ncrna:snoRNA chromosome:GRCh37:11:93465527:93465665:-1 gene:ENSG00000207304 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 93465527	 93465665	-	ENSG00000207304	ENST00000384574	NA	NA	KIAA1731	NA	chr11:93455527-93463522	inter
CUST_20765_PI429285431	1.2127652	A	2.4768271	A	0.416370020363838	0	lncRNA	22398-1_{1..737}	lnc-MAOA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAOA-1:1	chrX	 43828706	 43829442	+	lnc-MAOA-1	lnc-MAOA-1:1	ENSG00000236276.1	NDP-AS1	NDP	"hg19_refFlat_NDP:range=chrX:43809045-438178915'pad=0,hg19_refFlat_NDP:range=chrX:43809045-438178915'pad=0 3'pad=0 strand=- repeatMasking=none,-100.90chrX:43818706-43832921"	NA	inner
LNCA_21_P0006788	3.2060742	P	3.148994	P	1.04035809884141	0	lncRNA	XR_110454	XR_110454	XR_110454	NA	Hs.338140	LOC100505869	uncharacterized LOC100505869	ENST00000435434	THC2639355	NA	"PREDICTED: Homo sapiens hypothetical LOC100505869 (LOC100505869), miscRNA [XR_110454]"	chr10:106112877-106111628	hs|10q25.1	Agilent_HUMAN_G3V2	XR_110454	XR_110454	chr10	106111628	106112877	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37630_PI429285431	5.168352	P	5.6143003	P	0.734101624598059	0	lncRNA	38726-1_{1..3000}	n346108|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1658|NULL|-1.4970600|-0.2329729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346108|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1658|NULL|-1.4970600|-0.2329729	chr6	  1146342	  1149341	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44847_PI429285431	1.0752134	A	1.5001011	A	0.744896712383884	0	lncRNA	49374-2_{3001..6000}	"gi|359465521|ref|NR_045597.1| Homo sapiens phosphodiesterase 10A (PDE10A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|359465521|ref|NR_045597.1| Homo sapiens phosphodiesterase 10A (PDE10A), transcript variant 2, non-coding RNA"	Chr6	165743776	165746775	-	10846	NR_045597.1	NA	NA	NA	NA	NA	inter
CUST_12336_PI429285431	0.9079117	A	1.683363	A	0.584205845985424	0	lncRNA	13948-1_{1..600}	lnc-WDR7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR7-1:1	chr18	 54703405	 54704004	+	lnc-WDR7-1	lnc-WDR7-1:1	XLOC_012689	linc-ST8SIA3-3	WDR7	NA	chr18:54693405-54697036	inter
CUST_50063_PI429285431	0.90134114	A	0.90760076	A	0.995670561204298	0	lncRNA	53796-1_{1..2109}	hg19_lincRNAsTranscripts_TCONS_l2_00027785 range=chr8:58131729-58153837 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027785 range=chr8:58131729-58153837 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 58131729	 58133837	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011221	7.0673857	P	7.1294966	P	0.957861584551234	0	lncRNA	ENST00000413501	NA	NA	NA	NA	XLOC_l2_003911	NA	ENST00000413501	THC2533795	NA	"BROAD Institute lincRNA (XLOC_l2_003911), lincRNA [TCONS_l2_00007088]"	chr13:25747137-25747078	hs|13q12.13	Agilent_HUMAN_G3V2	ENST00000413501	ENST00000413501	chr13	 25747078	 25747137	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42530_PI429285431	0.89001405	A	0.8963475	A	0.995619609010983	0	lncRNA	45324-1_{1..123}	ENST00000391188 ncrna:snoRNA chromosome:GRCh37:4:53614304:53614426:1 gene:ENSG00000212490 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391188 ncrna:snoRNA chromosome:GRCh37:4:53614304:53614426:1 gene:ENSG00000212490 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	 53614304	 53614426	+	ENSG00000212490	ENST00000391188	NA	NA	LOC100288413	NA	chr4:53609684-53617807	inner
CUST_25940_PI429285431	2.5855155	A	2.9370515	A	0.783749216069883	0	lncRNA	27459-1_{1..552}	lnc-PHF14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHF14-1:1	chr7	 11267144	 11267695	+	lnc-PHF14-1	lnc-PHF14-1:1	ENSG00000230333.1	AC004538.3	NA	NA	NA	inter
CUST_49335_PI429285431	6.2687764	P	6.1674123	P	1.07278732723828	0	lncRNA	53148-1_{1..544}	hg19_lincRNAsTranscripts_TCONS_l2_00023411 range=chr5:68914137-68919906 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023411 range=chr5:68914137-68919906 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 68914137	 68914680	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46871_PI429285431	3.690321	P	4.192534	P	0.706022957021069	0	lncRNA	51001-1_{1..1083}	"gi|208973234|ref|NR_024193.1| Homo sapiens histone linker H1 domain, spermatid-specific 1, pseudogene (HILS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|208973234|ref|NR_024193.1| Homo sapiens histone linker H1 domain, spermatid-specific 1, pseudogene (HILS1), transcript variant 1, non-coding RNA"	Chr17	 48248789	 48249871	-	373861	NR_024193.1	NA	NA	NA	NA	NA	inter
CUST_26491_PI429285431	1.4519569	A	1.3747764	A	1.05495429737839	0	lncRNA	28000-1_{1..292}	lnc-C1orf186-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf186-1:3	chr1	206289367	206289658	-	lnc-C1orf186-1	lnc-C1orf186-1:3	ENSG00000240754.1	RP11-38J22.6	NA	NA	NA	inter
CUST_20280_PI429285431	2.812962	A	2.868978	A	0.961916786607082	0	lncRNA	21923-1_{1..565}	lnc-FAN1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAN1-1:2	chr15	 31327956	 31328520	+	lnc-FAN1-1	lnc-FAN1-1:2	ENSG00000259720.1	RP11-348B17.1	TRPM1	"hg19_refFlat_TRPM1:range=chr15:31294025-313691245'pad=0,hg19_refFlat_TRPM1:range=chr15:31294025-313691245'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_TRPM3:range=chr9:73150869-734778265'pad=0,hg19_refFlat_TRPM3:range=chr9:73150869-734778265'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_TRPM3:range=chr9:73150869-737362705'pad=0,hg19_refFlat_TRPM3:range=chr9:73150869-737362705'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_TRPM1:range=chr15:31294025-313735585'pad=0,hg19_refFlat_TRPM1:range=chr15:31294025-313735585'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_TRPM1:range=chr15:31294025-314531625'pad=0,hg19_refFlat_TRPM1:range=chr15:31294025-314531625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80chr15:31317956-31338173"	NA	inner
CUST_46870_PI429285431	6.6750555	P	6.787419	P	0.925071318627585	0	lncRNA	51000-1_{1..937}	"gi|208973233|ref|NR_024192.1| Homo sapiens histone linker H1 domain, spermatid-specific 1, pseudogene (HILS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|208973233|ref|NR_024192.1| Homo sapiens histone linker H1 domain, spermatid-specific 1, pseudogene (HILS1), transcript variant 2, non-coding RNA"	Chr17	 48248789	 48249725	-	373861	NR_024192.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003771	5.5272055	P	5.7617517	P	0.849952309756126	0	lncRNA	TCONS_00008580	NA	NA	NA	NA	XLOC_004089	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004089), lincRNA [TCONS_00008580]"	chr4:137502859-137502800	hs|4q28.3	Agilent_HUMAN_G3V2	TCONS_00008580	TCONS_00008580	chr4	137502800	137502859	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14971_PI429285431	5.6493897	P	5.5912805	P	1.04110039733175	0	lncRNA	16633-1_{1..645}	lnc-FGF8-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGF8-1:2	chr10	103526683	103527327	-	lnc-FGF8-1	lnc-FGF8-1:2	XLOC_008927	linc-FBXW4-1	FGF8	NA	chr10:103529887-103536749	inter
CUST_10112_PI429285431	1.9220428	A	2.9413607	A	0.493349550656865	0	lncRNA	11637-1_{1..346}	lnc-RP11-467M13.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-467M13.1.1-3:1	chr16	 17119571	 17119916	+	lnc-RP11-467M13.1.1-3	lnc-RP11-467M13.1.1-3:1	XLOC_011655	linc-TMC7-1	NA	NA	NA	inter
CUST_4666_PI429285431	1.5199702	A	1.3824599	A	1.10000516664462	0	lncRNA	4612-1_{1..561}	"transcript_id ""ENST00000430214.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430214.1"" | genecode_v17"	chr13	 88795122	 88795682	+	ENSG00000231019.1	ENST00000430214.1	RP11-545P6.2	RP11-545P6.2-001	NA	NA	NA	inter
LNCA_33_P3414207	3.524788	P	2.5708647	A	1.93713338920304	0	lncRNA	XR_132689	XR_132689	XR_132689	100652838	Hs.721878	LOC100652838	uncharacterized LOC100652838	ENST00000421483	THC2505982	NA	"PREDICTED: Homo sapiens hypothetical LOC100652838 (LOC100652838), miscRNA [XR_132689]"	chrX:131564098-131564157	hs|Xq26.2	Agilent_HUMAN_G3V2	XR_132689	XR_132689	chrX	131564098	131564157	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32553_PI429285431	10.644624	P	10.403333	P	1.18204994925556	0	lncRNA	34217-2_{3001..3497}	n339166|BC047542|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1597|NULL|-0.8942860|-0.1909620	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339166|BC047542|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1597|NULL|-0.8942860|-0.1909620	chr2	231852085	231852581	-	NA	NA	NA	NA	SPATA3	NA	chr2:231860839-231870746	inter
CUST_4523_PI429285431	7.015834	P	7.02254	P	0.995362541378884	0	lncRNA	4471-1_{1..1252}	"transcript_id ""ENST00000443685.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443685.3"" | genecode_v17"	chr12	131142718	131143969	+	ENSG00000256343.2	ENST00000443685.3	RP11-662M24.1	RP11-662M24.1-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60"	NA	inter
CUST_29043_PI429285431	1.6709368	A	1.3963974	A	1.20960784382116	0	lncRNA	30772-1_{1..231}	n326533|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027723|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027723|-1.0623000|-0.3399781	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326533|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027723|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027723|-1.0623000|-0.3399781	chr1	 90749054	 90749284	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002617	4.0080814	P	4.3877454	P	0.768616578643517	0	lncRNA	TCONS_00004935	NA	NA	NA	NA	XLOC_001732	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001732), lincRNA [TCONS_00004935]"	chr2:163175882-163176543	hs|2q24.2	Agilent_HUMAN_G3V2	TCONS_00004935	TCONS_00004935	chr2	163175882	163176543	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5094_PI429285431	1.3256526	A	0.97261566	A	1.27724646248954	0	lncRNA	5034-1_{1..2161}	"transcript_id ""ENST00000500487.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000500487.1"" | genecode_v17"	chr15	 21941147	 21943307	-	ENSG00000247765.1	ENST00000500487.1	RP11-32B5.7	RP11-32B5.7-001	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90"	NA	inter
CUST_1671_PI429285431	0.9446134	A	1.7029042	A	0.591196322323903	0	lncRNA	1656-1_{1..1576}	"transcript_id ""ENST00000513304.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513304.1"" | genecode_v17"	chr4	   124404	   125979	+	ENSG00000250312.2	ENST00000513304.1	ZNF718	ZNF718-003	ZNF718	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60chr4:124420-137532"	NA	inner
CUST_48136_PI429285431	2.8985298	A	3.2810304	P	0.767106823817801	0	lncRNA	52004-1_{1..545}	"gi|310110288|ref|XR_111240.1| PREDICTED: Homo sapiens uncharacterized LOC100507511, transcript variant 2 (LOC100507511), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310110288|ref|XR_111240.1| PREDICTED: Homo sapiens uncharacterized LOC100507511, transcript variant 2 (LOC100507511), misc_RNA"	NA	NA	NA	NA	NA	XR_111240.1	NA	NA	NA	NA	NA	Unknown
CUST_12439_PI429285431	0.91031086	A	0.8988447	A	1.00797940357171	0	lncRNA	14052-1_{1..666}	lnc-VAX1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VAX1-1:3	chr10	118928371	118929036	-	lnc-VAX1-1	lnc-VAX1-1:3	XLOC_008959	linc-VAX1-2	NA	NA	NA	inter
CUST_15978_PI429285431	3.4181805	P	3.4209077	P	0.998111434597305	0	lncRNA	17677-1_{1..1043}	lnc-INSC-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INSC-2:1	chr11	 15681808	 15682850	+	lnc-INSC-2	lnc-INSC-2:1	XLOC_009073	linc-C11orf58-4	NA	NA	NA	inter
CUST_42471_PI429285431	9.749338	P	10.097623	P	0.78551732479034	0	lncRNA	45226-1_{1..135}	ENST00000390879 ncrna:snoRNA chromosome:GRCh37:2:149018143:149018277:-1 gene:ENSG00000212181 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390879 ncrna:snoRNA chromosome:GRCh37:2:149018143:149018277:-1 gene:ENSG00000212181 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	149018143	149018277	-	ENSG00000212181	ENST00000390879	NA	NA	MBD5	NA	chr2:149008143-149028277	inner
CUST_47711_PI429285431	1.3072233	A	1.8737345	A	0.67524773472492	0	lncRNA	51674-2_{3001..5768}	"gi|385137088|ref|NR_047626.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 56, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137088|ref|NR_047626.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 56, non-coding RNA"	ChrY	 15363259	 15366026	-	7404	NR_047626.1	NA	NA	NA	NA	NA	inter
CUST_24110_PI429285431	5.2263117	P	5.8967595	P	0.628311634521415	0	lncRNA	25661-1_{1..481}	lnc-C1orf122-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf122-1:1	chr1	 38327167	 38327647	+	lnc-C1orf122-1	lnc-C1orf122-1:1	ENSG00000230955.1	RP11-109P14.10	INPP5B	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00chr1:38317167-38337252"	NA	inner
CUST_29263_PI429285431	6.8097367	P	5.2582154	P	2.93126073267793	0	lncRNA	31014-1_{1..504}	n332365|EU392524|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000557734|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000557734|0.7142700|-0.4518992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332365|EU392524|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000557734|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000557734|0.7142700|-0.4518992	chr6	131907888	131908391	-	NA	NA	NA	NA	MED23	NA	chr6:131897888-131934228	inner
CUST_36588_PI429285431	1.0778254	A	0.9119005	A	1.12188507888634	0	lncRNA	37782-1_{1..709}	n345084|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_633|NULL|-1.5087300|-0.3099702	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345084|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_633|NULL|-1.5087300|-0.3099702	chrX	 46757034	 46757742	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41071_PI429285431	5.172505	P	5.270549	P	0.934298851757598	0	lncRNA	41745-1_{1..72}	ENST00000516775 ncrna:miRNA chromosome:GRCh37:12:32068570:32068641:-1 gene:ENSG00000252584 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516775 ncrna:miRNA chromosome:GRCh37:12:32068570:32068641:-1 gene:ENSG00000252584 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 32068570	 32068641	-	ENSG00000252584	ENST00000516775	NA	NA	NA	NA	NA	inter
CUST_39975_PI429285431	1.2114685	A	1.052426	A	1.11654585354904	0	lncRNA	40847-1_{1..3000}	n407055|NR_024549|lncRNA|Homosapiens||RefGeneNoncode|NR_024549||12.5172000|-0.3104194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407055|NR_024549|lncRNA|Homosapiens||RefGeneNoncode|NR_024549||12.5172000|-0.3104194	chr7	 86781676	 86784675	+	NA	NA	NA	NA	DMTF1	NA	chr7:86781677-86825648	inner
CUST_14469_PI429285431	0.8857454	A	1.2101555	A	0.798624867347967	0	lncRNA	16132-1_{1..2025}	lnc-PITRM1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PITRM1-5:1	chr10	  3477866	  3479890	-	lnc-PITRM1-5	lnc-PITRM1-5:1	XLOC_008694	linc-PITRM1-4	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60"	NA	inter
LNCA_21_P0013498	2.1252084	A	2.30604	A	0.882194334190283	0	lncRNA	TCONS_l2_00027895	NA	NA	NA	NA	XLOC_l2_014289	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014289), lincRNA [TCONS_l2_00027895]"	chr8:95582577-95582636	hs|8q22.1	Agilent_HUMAN_G3V2	TCONS_l2_00027895	TCONS_l2_00027895	chr8	 95582577	 95582636	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48945_PI429285431	5.4844046	P	5.6013975	P	0.92210765591135	0	lncRNA	52787-1_{1..924}	hg19_lincRNAsTranscripts_TCONS_l2_00018979 range=chr3:165178241-165257101 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018979 range=chr3:165178241-165257101 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	165178241	165179164	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19462_PI429285431	0.8882581	A	0.93184555	A	0.970239318244553	0	lncRNA	21121-1_{1..657}	lnc-SLC39A11-1:29	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC39A11-1:29	chr17	 70335643	 70336299	-	lnc-SLC39A11-1	lnc-SLC39A11-1:29	ENSG00000227036.2	LINC00511	NA	NA	NA	inter
CUST_3880_PI429285431	0.8874672	A	1.9501	A	0.478757568712777	0	lncRNA	3849-1_{1..506}	"transcript_id ""ENST00000525512.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525512.1"" | genecode_v17"	chr11	 23782876	 23783381	-	ENSG00000254861.1	ENST00000525512.1	RP11-945A11.2	RP11-945A11.2-001	NA	NA	NA	inter
CUST_31979_PI429285431	1.7444363	A	1.6330494	A	1.08026622532173	0	lncRNA	33701-2_{3001..4026}	n338538|AK094916|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|940|NULL|-1.1758900|-0.4320777	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338538|AK094916|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|940|NULL|-1.1758900|-0.4320777	chr1	222900535	222901560	-	NA	NA	NA	NA	FAM177B	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BROX:range=chr1:222889042-2229060565'pad=0,hg19_refFlat_BROX:range=chr1:222889042-2229060565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00chr1:222910558-222924002"	NA	inner
CUST_48246_PI429285431	0.902375	A	0.8999266	A	1.00169854244873	0	lncRNA	52108-1_{1..1346}	hg19_lincRNAsTranscripts_TCONS_l2_00000960 range=chr1:230208-259183 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000960 range=chr1:230208-259183 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	   230208	   231553	-	NA	NA	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.72;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20"	NA	inter
CUST_21133_PI429285431	1.3431637	A	1.1759517	A	1.12288641496785	0	lncRNA	22758-1_{1..797}	lnc-IL31RA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL31RA-1:1	chr5	 55237026	 55237822	+	lnc-IL31RA-1	lnc-IL31RA-1:1	ENSG00000262211.1	CTD-2031P19.5	IL6ST	"hg19_refFlat_IL6ST:range=chr5:55236910-552721065'pad=0,hg19_refFlat_IL6ST:range=chr5:55236910-552721065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80chr5:55230923-55247555"	NA	inner
CUST_12533_PI429285431	4.6808643	P	4.79612	P	0.923218667043308	0	lncRNA	14144-1_{1..392}	lnc-ZCCHC24-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZCCHC24-1:1	chr10	 81137291	 81137682	-	lnc-ZCCHC24-1	lnc-ZCCHC24-1:1	XLOC_008866	linc-POLR3A-4	ZCCHC24	NA	chr10:81142081-81147298	inter
CUST_117_PI429285431	2.6991167	A	3.357847	P	0.633435531368884	0	lncRNA	108-1_{1..513}	"transcript_id ""ENST00000434264.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434264.1"" | genecode_v17"	chr1	   717325	   717837	+	ENSG00000237491.3	ENST00000434264.1	RP11-206L10.9	RP11-206L10.9-017	NA	NA	NA	inter
CUST_30986_PI429285431	6.405263	P	6.5461273	P	0.906975635115033	0	lncRNA	32774-1_{1..649}	n337148|AF399528|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383947|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383947|4.6548400|-0.1974083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337148|AF399528|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383947|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383947|4.6548400|-0.1974083	chr11	 59210852	 59211500	+	NA	NA	NA	NA	OR5A1	NA	chr11:59210642-59211589	inner
CUST_15448_PI429285431	0.89609563	A	0.9058238	A	0.993279629764767	0	lncRNA	17136-1_{1..419}	lnc-RAB2A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB2A-2:1	chr8	 60532471	 60532889	+	lnc-RAB2A-2	lnc-RAB2A-2:1	XLOC_006813	linc-RAB2A-2	NA	NA	NA	inter
CUST_38218_PI429285431	7.678215	P	7.7765274	P	0.934125050309733	0	lncRNA	39283-1_{1..3000}	n381591|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001luy.1||2.2159000|-0.1104514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381591|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001luy.1||2.2159000|-0.1104514	chr11	  1994988	  1997987	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007203	1.7352874	A	2.358871	A	0.649056691389319	0	lncRNA	TCONS_00019285	NA	NA	NA	NA	XLOC_009118	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009118), lincRNA [TCONS_00019285]"	chr11:45030105-45063146	hs|11p11.2	Agilent_HUMAN_G3V2	TCONS_00019285	TCONS_00019285	chr11	 45030105	 45063146	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32347_PI429285431	0.9035995	A	1.4186437	A	0.699771493496192	0	lncRNA	34027-1_{1..1515}	n338929|BC040913|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1355|NULL|-0.7634260|-0.3345310	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338929|BC040913|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1355|NULL|-0.7634260|-0.3345310	chr2	105104913	105106427	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13608_PI429285431	3.0495005	P	3.1994774	P	0.901264893278276	0	lncRNA	15247-1_{1..880}	lnc-C10orf122-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf122-1:11	chr10	127397753	127398632	-	lnc-C10orf122-1	lnc-C10orf122-1:11	XLOC_008982	linc-C10orf122-2	NA	NA	NA	inter
CUST_4921_PI429285431	0.89706075	A	0.908276	A	0.992256319067192	0	lncRNA	4864-1_{1..476}	"transcript_id ""ENST00000554142.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554142.1"" | genecode_v17"	chr14	 84373216	 84373691	-	ENSG00000258532.1	ENST00000554142.1	RP11-353P15.1	RP11-353P15.1-001	NA	NA	NA	inter
CUST_19035_PI429285431	4.70349	P	4.0229383	P	1.60275254548164	0	lncRNA	20725-1_{1..469}	lnc-NIPSNAP3B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NIPSNAP3B-1:1	chr9	107691063	107691531	+	lnc-NIPSNAP3B-1	lnc-NIPSNAP3B-1:1	ENSG00000226334	RP11-217B7.2	ABCA1	NA	chr9:107681063-107690527	inter
CUST_28178_PI429285431	3.5238445	P	3.9412029	P	0.748794425635867	0	lncRNA	29804-1_{1..569}	n325457|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323349|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323349|-1.0326400|-0.4609385	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325457|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323349|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323349|-1.0326400|-0.4609385	chr2	  6696705	  6697273	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34791_PI429285431	1.8681219	A	3.1954174	P	0.398514604159649	0	lncRNA	36228-1_{1..1126}	n341699|CR618740|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4170|NULL|-1.1387200|-0.2766976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341699|CR618740|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4170|NULL|-1.1387200|-0.2766976	chr9	 73222062	 73223187	+	NA	NA	NA	NA	TRPM3	NA	chr9:73212062-73233188	inner
CUST_45479_PI429285431	1.4868748	A	2.7466135	A	0.417619591857238	0	lncRNA	49894-1_{1..1240}	"gi|238018097|ref|NR_027708.1| Homo sapiens IDI2 antisense RNA 1 (IDI2-AS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|238018097|ref|NR_027708.1| Homo sapiens IDI2 antisense RNA 1 (IDI2-AS1), transcript variant 3, non-coding RNA"	Chr10	  1068577	  1069816	+	55853	NR_027708.1	NA	NA	NA	"hg19_refFlat_IDI2:range=chr10:1065457-10706635'pad=0,hg19_refFlat_IDI2:range=chr10:1065457-10706635'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_IDI1:range=chr10:1087127-10949435'pad=0,hg19_refFlat_IDI1:range=chr10:1087127-10949435'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70"	NA	inter
CUST_34511_PI429285431	0.8905758	A	0.8964469	A	0.995938732930252	0	lncRNA	35975-1_{1..1210}	n341387|AL117591|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3856|NULL|-0.7867430|-0.2022373	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341387|AL117591|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3856|NULL|-0.7867430|-0.2022373	chr8	  1316807	  1318016	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42889_PI429285431	5.7110987	P	6.2319894	P	0.696941418313276	0	lncRNA	45978-1_{1..73}	ENST00000365444 ncrna:snoRNA chromosome:GRCh37:11:93464668:93464740:-1 gene:ENSG00000202314 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365444 ncrna:snoRNA chromosome:GRCh37:11:93464668:93464740:-1 gene:ENSG00000202314 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 93464668	 93464740	-	ENSG00000202314	ENST00000365444	NA	NA	KIAA1731	NA	chr11:93454668-93463522	inter
CUST_18988_PI429285431	0.9973532	A	0.910596	A	1.0619804442503	0	lncRNA	20680-1_{1..507}	lnc-GNAT3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNAT3-1:1	chr7	 80003657	 80004163	-	lnc-GNAT3-1	lnc-GNAT3-1:1	ENSG00000232667	AC004862.6	NA	NA	NA	inter
CUST_6229_PI429285431	1.0998801	A	0.9070098	A	1.14303557053754	0	lncRNA	6155-1_{1..555}	"transcript_id ""ENST00000590357.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590357.1"" | genecode_v17"	chr18	 59278870	 59279424	-	ENSG00000267175.1	ENST00000590357.1	RP11-879F14.1	RP11-879F14.1-001	NA	NA	NA	inter
CUST_33949_PI429285431	1.7586527	A	1.7261257	A	1.02280208028238	0	lncRNA	35488-2_{3001..3156}	n340748|AK091489|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3211|NULL|-0.9864430|-0.3518448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340748|AK091489|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3211|NULL|-0.9864430|-0.3518448	chr17	 48833416	 48833571	+	NA	NA	NA	NA	LUC7L3	NA	chr17:48820416-48830072	inter
LNCA_21_P0008078	0.89724	A	0.89987195	A	0.998177334354282	0	lncRNA	TCONS_00021820	NA	NA	NA	NA	XLOC_010419	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010419), lincRNA [TCONS_00021820]"	chr13:68628091-68628150	hs|13q21.33	Agilent_HUMAN_G3V2	TCONS_00021820	TCONS_00021820	chr13	 68628091	 68628150	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4297_PI429285431	0.90640646	A	0.8961651	A	1.00712402580229	0	lncRNA	4252-1_{1..589}	"transcript_id ""ENST00000539116.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539116.1"" | genecode_v17"	chr12	 65996649	 65997237	+	ENSG00000256268.1	ENST00000539116.1	RP11-221N13.3	RP11-221N13.3-002	NA	NA	NA	inter
LNCA_21_P0004204	1.5865157	A	0.8986136	A	1.61093926148544	0	lncRNA	TCONS_00009842	NA	NA	NA	NA	XLOC_004256	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004256), lincRNA [TCONS_00009842]"	chr5:2929812-2929871	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00009842	TCONS_00009842	chr5	  2929812	  2929871	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18614_PI429285431	5.619087	P	5.8887877	P	0.829491613425444	0	lncRNA	20321-1_{1..375}	lnc-CETN3-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CETN3-3:2	chr5	 89585713	 89586087	-	lnc-CETN3-3	lnc-CETN3-3:2	ENSG00000248555	RP11-61G23.1	NA	NA	NA	inter
CUST_14501_PI429285431	6.746996	P	6.934482	P	0.878134601616629	0	lncRNA	16167-1_{1..232}	lnc-ECI2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ECI2-3:1	chr6	  4401444	  4401675	-	lnc-ECI2-3	lnc-ECI2-3:1	XLOC_005590	linc-PECI-4	NA	NA	NA	inter
CUST_10495_PI429285431	0.8908587	A	0.88815266	A	1.00187744419206	0	lncRNA	12023-1_{1..483}	lnc-HACE1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HACE1-1:2	chr6	105379354	105379836	-	lnc-HACE1-1	lnc-HACE1-1:2	XLOC_005794	linc-HACE1-2	NA	NA	NA	inter
CUST_1053_PI429285431	3.7388976	P	4.1802354	P	0.736451386222654	0	lncRNA	1043-1_{1..812}	"transcript_id ""ENST00000441053.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441053.1"" | genecode_v17"	chr2	121839013	121839824	-	ENSG00000234455.1	ENST00000441053.1	AC067960.1	AC067960.1-001	NA	NA	NA	inter
CUST_27367_PI429285431	0.9037075	A	0.89451426	A	1.00639261448237	0	lncRNA	28930-1_{1..442}	n324529|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040407|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040407|-0.6470690|-0.2235472	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324529|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040407|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040407|-0.6470690|-0.2235472	chr6	 37625757	 37626198	+	NA	NA	NA	NA	MDGA1	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-19.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20chr6:37615757-37636614"	NA	inner
CUST_5360_PI429285431	0.99111104	A	1.4272816	A	0.73909383244617	0	lncRNA	5298-1_{1..385}	"transcript_id ""ENST00000557499.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557499.1"" | genecode_v17"	chr15	 98825304	 98825688	+	ENSG00000259041.1	ENST00000557499.1	RP11-167B3.1	RP11-167B3.1-001	NA	NA	NA	inter
CUST_41787_PI429285431	5.700457	P	5.8488007	P	0.902285746094072	0	lncRNA	43364-1_{1..80}	ENST00000581627 ncrna:miRNA chromosome:GRCh37:11:118781417:118781496:1 gene:ENSG00000264211 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581627 ncrna:miRNA chromosome:GRCh37:11:118781417:118781496:1 gene:ENSG00000264211 gene_biotype:miRNA transcript_biotype:miRNA	chr11	118781417	118781496	+	ENSG00000264211	ENST00000581627	NA	NA	BCL9L	NA	chr11:118771417-118781613	inner
LNCA_21_P0002038	2.3890877	A	3.0515103	P	0.631816447917174	0	lncRNA	ENST00000416279	NA	NA	NA	NA	XLOC_002044	NA	ENST00000416279	NA	NA	"BROAD Institute lincRNA (XLOC_002044), lincRNA [TCONS_00003249]"	chr2:32018951-32018892	hs|2p23.1	Agilent_HUMAN_G3V2	ENST00000416279	ENST00000416279	chr2	 32018892	 32018951	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31572_PI429285431	3.9890058	P	4.044201	P	0.962464210641672	0	lncRNA	33329-1_{1..2597}	n338072|BC041477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|459|NULL|0.5435930|-0.2350692	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338072|BC041477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|459|NULL|0.5435930|-0.2350692	chr15	 80846949	 80849545	-	NA	NA	NA	NA	ARNT2	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ARNT2:range=chr15:80696858-808860395'pad=0,hg19_refFlat_ARNT2:range=chr15:80696858-808860395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr15:80836949-80865285"	NA	inner
CUST_6722_PI429285431	2.222795	A	1.2614923	A	1.9470672306416	0	lncRNA	6670-1_{1..182}	"transcript_id ""ENST00000437987.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437987.1"" | genecode_v17"	chr20	 51297967	 51298148	+	ENSG00000232294.1	ENST00000437987.1	RP4-715N11.2	RP4-715N11.2-006	NA	NA	NA	inter
CUST_34135_PI429285431	2.9655526	A	3.2575479	A	0.816771651977637	0	lncRNA	35655-2_{3001..5423}	n340975|CR749855|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3441|NULL|-1.0484900|-0.3729633	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340975|CR749855|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3441|NULL|-1.0484900|-0.3729633	chr11	 13296303	 13298725	-	NA	NA	NA	NA	ARNTL	NA	chr11:13299325-13308678	inter
CUST_14592_PI429285431	2.8597705	P	3.7748299	P	0.530322035315919	0	lncRNA	16259-1_{1..476}	lnc-SLC6A9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC6A9-1:1	chr1	 44499317	 44499792	-	lnc-SLC6A9-1	lnc-SLC6A9-1:1	XLOC_000814	linc-SLC6A9	SLC6A9	NA	chr1:44489317-44497134	inter
CUST_19032_PI429285431	2.1113577	A	2.6009133	A	0.712244459953573	0	lncRNA	20722-1_{1..2831}	lnc-KCNAB3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-KCNAB3-1:1	chr17	  7818997	  7821827	-	lnc-KCNAB3-1	lnc-KCNAB3-1:1	ENSG00000179859	AC025335.1	KCNAB3	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10chr17:7826027-7829589"	NA	inter
CUST_29617_PI429285431	3.2897813	P	3.3354845	P	0.968817479751731	0	lncRNA	31378-1_{1..388}	n333175|AF421357|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079396|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079396|1.7448300|-0.1211885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333175|AF421357|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079396|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079396|1.7448300|-0.1211885	chr16	  1306552	  1306939	+	NA	NA	NA	NA	UBE2I	NA	chr16:1311004-1317077	inner
CUST_14759_PI429285431	1.4810305	A	1.5279105	A	0.968027541812527	0	lncRNA	16420-1_{1..1997}	lnc-GABRA5-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GABRA5-4:7	chr15	 26385061	 26387057	+	lnc-GABRA5-4	lnc-GABRA5-4:7	XLOC_011189	linc-GABRA5-2	NA	NA	NA	inter
CUST_49206_PI429285431	1.1615123	A	1.1132874	A	1.03399191144416	0	lncRNA	53025-1_{1..538}	hg19_lincRNAsTranscripts_TCONS_l2_00020871 range=chr4:171014149-171021478 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020871 range=chr4:171014149-171021478 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	171014149	171014686	+	NA	NA	NA	NA	AADAT	NA	chr4:171004149-171011372	inter
CUST_28222_PI429285431	3.3083692	P	3.643699	P	0.792602926917156	0	lncRNA	29855-1_{1..445}	n325509|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322389|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322389|-0.8050900|-0.2197256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325509|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322389|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322389|-0.8050900|-0.2197256	chr2	   295840	   296284	-	NA	NA	NA	NA	FAM150B	NA	chr2:285840-288308	inter
CUST_34556_PI429285431	3.194632	P	3.2255883	A	0.978771297451522	0	lncRNA	36016-1_{1..1417}	n341437|BC043372|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3907|NULL|3.9692400|-0.3028074	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341437|BC043372|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3907|NULL|3.9692400|-0.3028074	chr13	111774998	111776414	+	NA	NA	NA	NA	ARHGEF7	NA	chr13:111767624-111807169	inner
CUST_9015_PI429285431	1.0056837	A	1.1410882	A	0.910414537565296	0	lncRNA	10542-1_{1..2437}	lnc-SLAMF7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLAMF7-1:1	chr1	160745416	160747852	+	lnc-SLAMF7-1	lnc-SLAMF7-1:1	ENSG00000250225	ENST00000503092	NA	NA	NA	inter
CUST_50340_PI429285431	4.9674053	P	5.7136016	P	0.596173312448918	0	lncRNA	54055-2_{3001..3310}	hg19_lincRNAsTranscripts_TCONS_l2_00029089 range=chr9:133231492-133253556 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029089 range=chr9:133231492-133253556 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	133234492	133234801	+	NA	NA	NA	NA	HMCN2	NA	chr9:133223389-133263556	inter
CUST_26612_PI429285431	6.1101794	P	6.567306	P	0.72843563214522	0	lncRNA	28115-1_{1..785}	lnc-CCDC33-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC33-2:1	chr15	 74659049	 74659833	+	lnc-CCDC33-2	lnc-CCDC33-2:1	ENSG00000261821.1	CTD-2311M21.3	CYP11A1	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70chr15:74649049-74660081"	NA	inner
CUST_42204_PI429285431	0.88537276	A	0.8897007	A	0.997004595793423	0	lncRNA	44289-1_{1..83}	ENST00000401216 ncrna:miRNA chromosome:GRCh37:10:29891193:29891275:-1 gene:ENSG00000216035 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401216 ncrna:miRNA chromosome:GRCh37:10:29891193:29891275:-1 gene:ENSG00000216035 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 29891193	 29891275	-	ENSG00000216035	ENST00000401216	NA	NA	SVIL	NA	chr10:29881193-29901275	inner
CUST_15750_PI429285431	0.888179	A	1.4826044	A	0.662308188348973	0	lncRNA	17438-1_{1..1668}	lnc-IL20RA-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL20RA-1:4	chr6	137304151	137305818	-	lnc-IL20RA-1	lnc-IL20RA-1:4	XLOC_005846	linc-MAP3K5	NA	NA	NA	inter
CUST_22937_PI429285431	3.879439	P	3.9207098	P	0.971798560134453	0	lncRNA	24512-1_{1..494}	lnc-APC-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-APC-4:2	chr5	111542626	111543119	+	lnc-APC-4	lnc-APC-4:2	ENSG00000251187.1	CTC-459M5.2	EPB41L4A	"hg19_refFlat_EPB41L4A:range=chr5:111500687-1117547365'pad=0,hg19_refFlat_EPB41L4A:range=chr5:111500687-1117547365'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80chr5:111532626-111552760"	NA	inner
CUST_9019_PI429285431	0.8959668	A	0.88662785	A	1.00649426373549	0	lncRNA	10546-1_{1..2214}	lnc-ZNF160-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF160-1:1	chr19	 53517843	 53520056	-	lnc-ZNF160-1	lnc-ZNF160-1:1	ENSG00000251255	ENST00000512592	ERVV-1	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ERVV-2:range=chr19:53552505-535541125'pad=0,hg19_refFlat_ERVV-2:range=chr19:53552505-535541125'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.90;hg19_refFlat_ERVV-1:range=chr19:53517344-535187775'pad=0,hg19_refFlat_ERVV-1:range=chr19:53517344-535187775'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60chr19:53507843-53519833"	NA	inner
CUST_5510_PI429285431	3.7476323	P	4.423309	P	0.626038505384364	0	lncRNA	5441-1_{1..2972}	"transcript_id ""ENST00000562945.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562945.1"" | genecode_v17"	chr16	 34427061	 34430032	-	ENSG00000260073.1	ENST00000562945.1	RP11-488I20.9	RP11-488I20.9-001	NA	NA	NA	inter
CUST_14280_PI429285431	5.485801	P	5.882527	P	0.759580092427976	0	lncRNA	15939-1_{1..839}	lnc-ATP1A1OS-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP1A1OS-3:1	chr1	116837026	116837864	-	lnc-ATP1A1OS-3	lnc-ATP1A1OS-3:1	XLOC_000974	linc-NHLH2-3	NA	NA	NA	inter
CUST_6157_PI429285431	0.8915578	A	1.0814642	A	0.876662596091993	0	lncRNA	6083-1_{1..663}	"transcript_id ""ENST00000600644.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600644.1"" | genecode_v17"	chr18	 39047395	 39048057	-	ENSG00000267313.2	ENST00000600644.1	RP11-142I20.1	RP11-142I20.1-008	NA	NA	NA	inter
CUST_20677_PI429285431	0.9003368	A	0.90341353	A	0.997869645707826	0	lncRNA	22314-1_{1..445}	lnc-TIAL1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIAL1-1:2	chr10	121431532	121431976	-	lnc-TIAL1-1	lnc-TIAL1-1:2	ENSG00000224489.1	RP11-179H18.8	BAG3	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60chr10:121421532-121437331"	NA	inner
CUST_4475_PI429285431	2.9531975	A	3.4131107	P	0.727029999231645	0	lncRNA	4424-1_{1..480}	"transcript_id ""ENST00000544419.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544419.1"" | genecode_v17"	chr12	126910536	126911015	+	ENSG00000256927.1	ENST00000544419.1	RP5-944M2.2	RP5-944M2.2-001	NA	NA	NA	inter
CUST_11529_PI429285431	5.751737	P	5.7852693	P	0.977025214484084	0	lncRNA	13101-1_{1..444}	lnc-GADD45G-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GADD45G-4:3	chr9	 92522698	 92523141	+	lnc-GADD45G-4	lnc-GADD45G-4:3	XLOC_007450	linc-SYK-3	NA	NA	NA	inter
LNCA_21_P0013379	2.4256966	A	2.5589538	A	0.911770602887093	0	lncRNA	ENST00000423781	NA	NA	NA	NA	XLOC_l2_013390	NA	ENST00000423781	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013390), lincRNA [TCONS_l2_00025862]"	chr7:47066958-47067017	hs|7p12.3	Agilent_HUMAN_G3V2	ENST00000423781	ENST00000423781	chr7	 47066958	 47067017	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50667_PI429285431	3.0414784	A	1.5745995	A	2.7642323733116	0	lncRNA	54342-1_{1..2699}	hg19_lincRNAsTranscripts_TCONS_l2_00003506 range=chr10:43015297-43048261 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003506 range=chr10:43015297-43048261 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 43015297	 43017995	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46729_PI429285431	7.5809555	P	8.585815	P	0.498318658899286	0	lncRNA	50881-1_{1..1905}	"gi|382545550|ref|NR_047516.1| Homo sapiens arrestin, beta 2 (ARRB2), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|382545550|ref|NR_047516.1| Homo sapiens arrestin, beta 2 (ARRB2), transcript variant 7, non-coding RNA"	Chr17	  4613789	  4615693	+	409	NR_047516.1	NA	NA	NA	NA	NA	inter
CUST_39615_PI429285431	1.0172049	A	1.14456	A	0.915508318611946	0	lncRNA	40555-1_{1..510}	n387685|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ljn.1||-1.1134700|-0.1550056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n387685|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ljn.1||-1.1134700|-0.1550056	chr8	136303418	136303927	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1301_PI429285431	1.404507	A	0.92824113	A	1.39113831685261	0	lncRNA	1291-1_{1..567}	"transcript_id ""ENST00000437616.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437616.1"" | genecode_v17"	chr3	 10049110	 10049676	-	ENSG00000206567.5	ENST00000437616.1	AC022007.5	AC022007.5-003	LOC401052	NA	chr3:10048102-10052779	inner
CUST_14463_PI429285431	2.5715923	A	2.592696	A	0.985478498827126	0	lncRNA	16126-1_{1..1593}	lnc-EHD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EHD3-1:1	chr2	 31495442	 31497034	+	lnc-EHD3-1	lnc-EHD3-1:1	XLOC_001415	linc-SPAST-2	EHD3	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80chr2:31485442-31491260"	NA	inter
LNCA_21_P0014789	0.9010551	A	0.8973698	A	1.00255772070532	0	lncRNA	XR_132581	XR_132581	XR_132581	NA	NA	LOC100506578	uncharacterized protein C12orf71-like	NA	THC2558969	NA	"PREDICTED: Homo sapiens uncharacterized protein C12orf71-like (LOC100506578), miscRNA [XR_132581]"	chr12:27745453-27745394	hs|12p11.23	Agilent_HUMAN_G3V2	XR_132581	XR_132581	chr12	 27745394	 27745453	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15728_PI429285431	8.620451	P	8.622486	P	0.998590439851986	0	lncRNA	17413-1_{1..536}	lnc-C5orf39-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf39-2:4	chr5	 42990941	 42991476	-	lnc-C5orf39-2	lnc-C5orf39-2:4	XLOC_004803	linc-SEPP1-3	NA	NA	NA	inter
CUST_3828_PI429285431	1.2556747	A	0.9444619	A	1.24075029702163	0	lncRNA	3795-1_{1..2600}	"transcript_id ""ENST00000423178.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000423178.2"" | genecode_v17"	chr10	127393859	127396458	-	ENSG00000224023.6	ENST00000423178.2	RP11-383C5.4	RP11-383C5.4-002	C10orf137	NA	chr10:127408084-127418135	inter
CUST_35417_PI429285431	3.8543267	P	3.649802	P	1.15230665354003	0	lncRNA	36827-1_{1..1745}	n342479|AK123550|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4973|NULL|-1.0089200|-0.1743431	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342479|AK123550|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4973|NULL|-1.0089200|-0.1743431	chr2	241619860	241621604	+	NA	NA	NA	NA	AQP12B	NA	chr2:241611820-241622317	inner
CUST_20895_PI429285431	0.8810735	A	3.346951	A	0.181007640349556	0	lncRNA	22526-1_{1..677}	lnc-PRDX6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRDX6-1:1	chr1	173581763	173582439	+	lnc-PRDX6-1	lnc-PRDX6-1:1	ENSG00000238272.1	RP3-436N22.3	SLC9A11	NA	chr1:173571763-173572233	inner
CUST_9009_PI429285431	0.9037085	A	0.91149044	A	0.994620491886479	0	lncRNA	10537-1_{1..446}	lnc-MARCKS-5:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MARCKS-5:13	chr6	114453244	114453689	+	lnc-MARCKS-5	lnc-MARCKS-5:13	ENSG00000228624	RP3-399L15.3	NA	NA	NA	inter
CUST_10424_PI429285431	6.010092	P	5.9578843	P	1.03685036216846	0	lncRNA	11952-1_{1..303}	lnc-ING2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ING2-1:1	chr4	184477988	184478290	+	lnc-ING2-1	lnc-ING2-1:1	XLOC_003803	linc-C4orf41	NA	NA	NA	inter
CUST_41777_PI429285431	9.197213	P	9.085711	P	1.08035241373931	0	lncRNA	43347-1_{1..82}	ENST00000408070 ncrna:miRNA chromosome:GRCh37:10:30653996:30654077:-1 gene:ENSG00000220997 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408070 ncrna:miRNA chromosome:GRCh37:10:30653996:30654077:-1 gene:ENSG00000220997 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 30653996	 30654077	-	ENSG00000220997	ENST00000408070	NA	NA	NA	NA	NA	inter
CUST_39110_PI429285431	0.9075958	A	0.89690316	A	1.00743910695852	0	lncRNA	40087-1_{1..1208}	n385674|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bdx.1||0.3026130|-0.3370544	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385674|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bdx.1||0.3026130|-0.3370544	chr9	111921537	111922744	-	NA	NA	NA	NA	C9orf4	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20chr9:111911537-111929571"	NA	inner
CUST_23914_PI429285431	6.065212	P	6.2441545	P	0.883350257554952	0	lncRNA	25471-1_{1..683}	lnc-GPR162-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR162-1:1	chr12	  6939023	  6939705	+	lnc-GPR162-1	lnc-GPR162-1:1	ENSG00000256010.1	U47924.11	LEPREL2	NA	chr12:6937572-6949018	inner
CUST_35137_PI429285431	0.8994077	A	1.2032895	A	0.81006983993266	0	lncRNA	36539-1_{1..1555}	n342105|BC035649|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4587|NULL|-1.0334000|-0.3178270	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342105|BC035649|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4587|NULL|-1.0334000|-0.3178270	chr6	110799109	110800663	+	NA	NA	NA	NA	SLC22A16	NA	chr6:110789109-110797844	inter
LNCA_21_P0002190	2.122685	A	1.229656	A	1.85707103372126	0	lncRNA	TCONS_00003618	NA	NA	NA	NA	XLOC_001407	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001407), lincRNA [TCONS_00003618]"	chr2:28582943-28584994	hs|2p23.2	Agilent_HUMAN_G3V2	TCONS_00003618	TCONS_00003618	chr2	 28582943	 28584994	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38113_PI429285431	13.106215	P	12.791182	P	1.24404010896853	0	lncRNA	39187-1_{1..766}	n381198|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ehx.1||2.6019800|-0.1427929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381198|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ehx.1||2.6019800|-0.1427929	chr1	120076170	120076935	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003749	0.8988817	A	0.9196936	A	0.985677842209495	0	lncRNA	TCONS_00008528	NA	NA	NA	NA	XLOC_004015	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004015), lincRNA [TCONS_00008528]"	chr4:90381103-90381044	hs|4q22.1	Agilent_HUMAN_G3V2	TCONS_00008528	TCONS_00008528	chr4	 90381044	 90381103	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36596_PI429285431	4.673339	P	4.835471	P	0.893703388841974	0	lncRNA	37790-1_{1..1018}	n345092|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_641|NULL|-1.3483500|-0.3317359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345092|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_641|NULL|-1.3483500|-0.3317359	chrX	 97643310	 97644327	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3050_PI429285431	0.9126234	A	0.9703405	A	0.960783246754544	0	lncRNA	3029-1_{1..564}	"transcript_id ""ENST00000522028.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522028.1"" | genecode_v17"	chr8	 29405688	 29406251	+	ENSG00000253182.1	ENST00000522028.1	RP11-486M23.2	RP11-486M23.2-001	NA	NA	NA	inter
CUST_31868_PI429285431	10.582486	P	10.769016	P	0.878716689211363	0	lncRNA	33600-1_{1..410}	n338420|AF361250|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|817|NULL|-1.3889500|-0.4095226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338420|AF361250|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|817|NULL|-1.3889500|-0.4095226	chr1	184431526	184431935	+	NA	NA	NA	NA	C1orf21	NA	chr1:184421526-184441933	inner
CUST_10364_PI429285431	2.6008828	A	3.2709875	P	0.62846107660825	0	lncRNA	11889-1_{1..668}	lnc-KIAA0196-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-KIAA0196-4:1	chr8	126762144	126762811	-	lnc-KIAA0196-4	lnc-KIAA0196-4:1	XLOC_007208	linc-KIAA0196-2	NA	NA	NA	inter
CUST_34901_PI429285431	1.0012037	A	1.0301019	A	0.980168575932215	0	lncRNA	36325-2_{3001..5402}	n341817|AL833364|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4296|NULL|2.2604700|-0.1897818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341817|AL833364|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4296|NULL|2.2604700|-0.1897818	chr12	  7263903	  7266304	+	NA	NA	NA	NA	C1RL	"hg19_refFlat_C1RL:range=chr12:7248987-72617765'pad=0,hg19_refFlat_C1RL:range=chr12:7248987-72617765'pad=0 3'pad=0 strand=- repeatMasking=none,-99.60;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-53.60chr12:7250903-7261869"	NA	inner
CUST_788_PI429285431	0.89482796	A	0.90430874	A	0.99344996965659	0	lncRNA	781-1_{1..754}	"transcript_id ""ENST00000450628.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450628.1"" | genecode_v17"	chr2	 19675211	 19675964	+	ENSG00000237992.1	ENST00000450628.1	AC010096.2	AC010096.2-001	NA	NA	NA	inter
CUST_9001_PI429285431	2.037833	A	2.278812	A	0.846170913451289	0	lncRNA	10530-1_{1..3000}	lnc-PNKP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PNKP-1:2	chr19	 50352267	 50355266	-	lnc-PNKP-1	lnc-PNKP-1:2	ENSG00000245041	ENST00000501766	PTOV1	NA	chr19:50354416-50363999	inter
CUST_39011_PI429285431	10.140444	P	10.352544	P	0.863279718510245	0	lncRNA	39991-1_{1..2735}	n385322|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003woi.2||0.4494460|-0.3043101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385322|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003woi.2||0.4494460|-0.3043101	chr7	    29245	    31979	-	NA	NA	NA	NA	LOC100132858	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40chr7:19828-36378"	NA	inter
CUST_25761_PI429285431	1.6599488	A	2.4139202	A	0.592969004612059	0	lncRNA	27286-1_{1..417}	lnc-OR2F1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR2F1-1:1	chr7	143656046	143656462	+	lnc-OR2F1-1	lnc-OR2F1-1:1	ENSG00000243583.1	RP4-669B10.3	OR2F1	NA	chr7:143657020-143658108	inter
CUST_22541_PI429285431	2.5379891	A	4.1536503	P	0.326315359257696	0	lncRNA	24128-1_{1..413}	lnc-CTAGE1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTAGE1-1:3	chr18	 20358082	 20358494	-	lnc-CTAGE1-1	lnc-CTAGE1-1:3	ENSG00000266850.1	RP11-370A5.1	NA	NA	NA	inter
CUST_7259_PI429285431	1.488063	A	1.4204316	A	1.04799468490172	0	lncRNA	8035-1_{1..315}	"transcript_id ""ENST00000582257.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582257.1"" | genecode_v17"	chr9	 37459392	 37459706	-	ENSG00000264255.1	ENST00000582257.1	RN7SL463P	RN7SL463P-201	ZBTB5	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60chr9:37449392-37465407"	NA	inner
CUST_38691_PI429285431	4.980019	P	5.49522	P	0.69969544262988	0	lncRNA	39688-1_{1..3000}	n384088|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zrw.1||1.8546700|-0.1439766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384088|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zrw.1||1.8546700|-0.1439766	chr22	 20291560	 20294559	+	NA	NA	NA	NA	DGCR6L	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10chr22:20301761-20307628"	NA	inter
CUST_396_PI429201921	0.8929991	A	0.9004719	A	0.99483364152345	0	lncRNA	248-2_{3001..6000}	TC01005733.hg.1	 TCONS_l2_00001463-XLOC_l2_001066 // Broad TUCP // linc-IGSF3-1 chr1:-:117315571-117325219 // chr1 // 100 // 100 // 0 // --- // 0///TCONS_l2_00001462-XLOC_l2_001066 // Broad TUCP // linc-IGSF3-1 chr1:-:117315569-117319121 // chr1 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:117315569-117319121	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00001462-XLOC_l2_001066	linc-IGSF3-1	chr1	117315569	117319121	-	NA	NA	NA	NA	NFIA	NA	chr1:61704668-61729182	Unknown
CUST_19015_PI429285431	3.8234496	P	2.3971467	A	2.68757105926096	0	lncRNA	20705-1_{1..524}	lnc-NKAIN3-3:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKAIN3-3:18	chr8	 64101293	 64101816	+	lnc-NKAIN3-3	lnc-NKAIN3-3:18	ENSG00000185728	YTHDF3	YTHDF3	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00chr8:64091293-64111600"	NA	inner
CUST_5145_PI429285431	0.90511656	A	1.7121499	A	0.571555959166527	0	lncRNA	5085-1_{1..566}	"transcript_id ""ENST00000558089.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558089.1"" | genecode_v17"	chr15	 37168580	 37169145	-	ENSG00000259280.1	ENST00000558089.1	RP11-122D10.1	RP11-122D10.1-002	MEIS2	NA	chr15:37183222-37188734	inter
CUST_1892_PI429285431	9.963228	P	9.861091	P	1.07336220927852	0	lncRNA	1883-1_{1..489}	"transcript_id ""ENST00000504882.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504882.1"" | genecode_v17"	chr4	135680554	135681042	+	ENSG00000249000.1	ENST00000504882.1	CTD-2012I17.1	CTD-2012I17.1-001	NA	NA	NA	inter
CUST_5676_PI429285431	4.4769297	P	5.564017	P	0.470710747878229	0	lncRNA	5601-1_{1..2843}	"transcript_id ""ENST00000599749.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000599749.1"" | genecode_v17"	chr16	 86521343	 86524185	-	ENSG00000268388.1	ENST00000599749.1	FENDRR	FENDRR-001	FOXF1	NA	chr16:86544133-86548070	inter
CUST_9626_PI429285431	0.9112124	A	1.1500413	A	0.847432932399078	0	lncRNA	11143-1_{1..2240}	lnc-ARID1B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARID1B-2:1	chr6	156672985	156675224	+	lnc-ARID1B-2	lnc-ARID1B-2:1	XLOC_005514	linc-ARID1B-2	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10"	NA	inter
CUST_23519_PI429285431	4.872737	P	5.0547657	P	0.881462622511136	0	lncRNA	25086-1_{1..220}	lnc-FGF10-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FGF10-3:6	chr5	 44808744	 44808963	-	lnc-FGF10-3	lnc-FGF10-3:6	ENSG00000251141.1	RP11-53O19.1	MRPS30	NA	chr5:44809027-44815616	inter
CUST_26790_PI429285431	2.5115054	A	2.267773	A	1.18405196620098	0	lncRNA	28294-1_{1..750}	n323847|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057240|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057240|1.2891600|-0.2984493	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323847|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057240|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057240|1.2891600|-0.2984493	chrX	 72957215	 72957964	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14556_PI429285431	0.9017027	A	0.9625948	A	0.958671135382812	0	lncRNA	16225-1_{1..1147}	lnc-C11orf82-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C11orf82-3:1	chr11	 81681423	 81682569	+	lnc-C11orf82-3	lnc-C11orf82-3:1	XLOC_009231	linc-C11orf82-2	NA	NA	NA	inter
LNCA_21_P0005830	6.888836	P	7.034714	P	0.903829154888419	0	lncRNA	XR_108905	XR_108905	XR_108905	NA	Hs.245745	LOC100507464	uncharacterized LOC100507464	ENST00000518854	THC2745907	NA	"PREDICTED: Homo sapiens hypothetical LOC100507464 (LOC100507464), miscRNA [XR_108905]"	chr8:50409393-50409334	hs|8q11.21	Agilent_HUMAN_G3V2	XR_108905	XR_108905	chr8	 50409334	 50409393	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28263_PI429285431	2.7505677	P	3.4943528	P	0.597170539841162	0	lncRNA	29898-1_{1..478}	n325555|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256004|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256004|-0.8710690|-0.2737941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325555|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256004|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256004|-0.8710690|-0.2737941	chr17	 33232981	 33233458	-	NA	NA	NA	NA	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40"	NA	inter
LNCA_33_P3395219	6.01875	P	6.512778	P	0.710039898597679	0	lncRNA	XR_112069	XR_112069	XR_112069	   374987	Hs.632414	NEXN-AS1	NEXN antisense RNA 1 (non-protein coding)	NA	THC2484325	NA	"PREDICTED: Homo sapiens chromosome 1 open reading frame 118 (C1orf118), miscRNA [XR_112069]"	chr1:78353981-78353922	hs|1p31.1	Agilent_HUMAN_G3V2	XR_112069	XR_112069	chr1	 78353922	 78353981	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30214_PI429285431	8.744794	P	8.922685	P	0.883994317001062	0	lncRNA	31989-1_{1..363}	n335062|AJ583694|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249149|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249149|0.0521188|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335062|AJ583694|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249149|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249149|0.0521188|-1.0000000	chr17	  1957509	  1957871	+	NA	NA	NA	NA	SMG6	NA	chr17:1963133-1968552	inner
CUST_43385_PI429285431	3.5262141	P	4.609085	P	0.472088452662319	0	lncRNA	48199-1_{1..1349}	"gi|311893330|ref|NR_037187.1| Homo sapiens APITD1-CORT readthrough (APITD1-CORT), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|311893330|ref|NR_037187.1| Homo sapiens APITD1-CORT readthrough (APITD1-CORT), transcript variant 4, non-coding RNA"	Chr1	 10490804	 10492152	+	100526739	NR_037187.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0009445	0.9022824	A	0.9072436	A	0.996567064252318	0	lncRNA	TCONS_00026260	NA	NA	NA	NA	XLOC_012616	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012616), lincRNA [TCONS_00026260]"	chr18:5747165-5747224	hs|18p11.31	Agilent_HUMAN_G3V2	TCONS_00026260	TCONS_00026260	chr18	  5747165	  5747224	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37734_PI429285431	1.3329325	A	1.452051	A	0.920750065584502	0	lncRNA	38827-3_{6001..8096}	n346235|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1785|NULL|-1.5752300|-0.3287695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346235|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1785|NULL|-1.5752300|-0.3287695	chr10	  4795747	  4797842	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70"	NA	inter
CUST_7991_PI429285431	2.1524942	A	2.8574553	A	0.613459029360631	0	lncRNA	9602-1_{1..1828}	lnc-AC069257.9.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AC069257.9.1-2:1	chr3	195886771	195888598	+	lnc-AC069257.9.1-2	lnc-AC069257.9.1-2:1	ENSG00000224652	XLOC_003002	NA	NA	NA	inter
CUST_28407_PI429285431	2.247165	A	2.3548386	A	0.928083425321522	0	lncRNA	30065-1_{1..606}	n325728|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045013|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045013|-1.2341800|-0.2829486	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325728|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045013|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045013|-1.2341800|-0.2829486	chr13	 50555937	 50556542	+	NA	NA	NA	NA	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50"	NA	inter
CUST_13610_PI429285431	0.9079002	A	0.9144188	A	0.995491843171906	0	lncRNA	15249-1_{1..611}	lnc-FAM71A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM71A-1:2	chr1	212848206	212848816	+	lnc-FAM71A-1	lnc-FAM71A-1:2	XLOC_000556	linc-TATDN3	NA	NA	NA	inter
CUST_41076_PI429285431	1.4918917	A	2.0692096	A	0.670208598055736	0	lncRNA	41753-1_{1..63}	ENST00000583094 ncrna:miRNA chromosome:GRCh37:12:49165758:49165820:-1 gene:ENSG00000264201 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583094 ncrna:miRNA chromosome:GRCh37:12:49165758:49165820:-1 gene:ENSG00000264201 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 49165758	 49165820	-	ENSG00000264201	ENST00000583094	NA	NA	ADCY6	NA	chr12:49159975-49175820	inner
CUST_48779_PI429285431	3.728393	P	3.9805903	P	0.839616660848363	0	lncRNA	52617-1_{1..2964}	hg19_lincRNAsTranscripts_TCONS_l2_00015073 range=chr2:201575922-201581089 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015073 range=chr2:201575922-201581089 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	201575922	201578885	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11158_PI429285431	3.3867645	P	3.1272237	P	1.19709761595987	0	lncRNA	12716-1_{1..501}	lnc-MYC-2:31	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYC-2:31	chr8	129113226	129113726	+	lnc-MYC-2	lnc-MYC-2:31	XLOC_006925	linc-EFR3A-4	NA	NA	NA	inter
CUST_29094_PI429285431	1.0586967	A	0.88982147	A	1.12418169587411	0	lncRNA	30827-1_{1..683}	n326590|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000024949|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000024949|-1.0927500|-0.3441774	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326590|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000024949|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000024949|-1.0927500|-0.3441774	chr1	 60353134	 60353816	+	NA	NA	NA	NA	CYP2J2	NA	chr1:60358980-60392423	inner
CUST_8404_PI429285431	0.8922159	A	0.89183533	A	1.00026382581842	0	lncRNA	9981-1_{1..1145}	lnc-C5orf17-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf17-4:1	chr5	 25162105	 25163249	+	lnc-C5orf17-4	lnc-C5orf17-4:1	ENSG00000250605	XLOC_004320	NA	NA	NA	inter
LNCA_33_P3672756	1.5572445	A	0.89029545	A	1.58771178948361	0	lncRNA	XR_112106	XR_112106	XR_112106	   284561	Hs.504540	LOC284561	uncharacterized LOC284561	NA	THC2601545	NA	"PREDICTED: Homo sapiens hypothetical LOC284561 (LOC284561), miscRNA [XR_112106]"	chr1:147763874-147763933	hs|1q21.2	Agilent_HUMAN_G3V2	XR_112106	XR_112106	chr1	147763874	147763933	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012678	2.114097	A	2.166442	A	0.964367542226011	0	lncRNA	TCONS_l2_00021279	NA	NA	NA	NA	XLOC_l2_011244	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011244), lincRNA [TCONS_l2_00021279]"	chr4:123652836-123652777	hs|4q27	Agilent_HUMAN_G3V2	TCONS_l2_00021279	TCONS_l2_00021279	chr4	123652777	123652836	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013683	0.8901198	A	0.88926375	A	1.00059354472192	0	lncRNA	THC2779909	NA	NA	NA	NA	XLOC_l2_015336	NA	NA	THC2779909	NA	"BROAD Institute lincRNA (XLOC_l2_015336), lincRNA [TCONS_l2_00029553]"	NA	NA	Agilent_HUMAN_G3V2	THC2779909	THC2779909	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22022_PI429285431	5.318589	P	5.239056	P	1.05667593947554	0	lncRNA	23631-1_{1..696}	lnc-C15orf54-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C15orf54-1:1	chr15	 39472018	 39472713	+	lnc-C15orf54-1	lnc-C15orf54-1:1	ENSG00000259423.1	RP11-265N7.2	NA	NA	NA	inter
CUST_7306_PI429285431	3.6079662	P	3.534043	P	1.05257512074615	0	lncRNA	8461-1_{1..313}	"transcript_id ""ENST00000363442.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000363442.1"" | genecode_v17"	chr14	 90178855	 90179167	+	ENSG00000200312.1	ENST00000363442.1	RN7SKP255	RN7SKP255-201	NA	NA	NA	inter
LNCA_21_P0014802	1.866867	A	2.272599	A	0.754853195366408	0	lncRNA	XR_132616	XR_132616	XR_132616	NA	Hs.610421	LOC100652950	uncharacterized LOC100652950	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652950, transcript variant 2 (LOC100652950), miscRNA [XR_132616]"	chr16:87730255-87730196	hs|16q24.2	Agilent_HUMAN_G3V2	XR_132616	XR_132616	chr16	 87730196	 87730255	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17300_PI429285431	3.9804957	P	3.4413311	A	1.45313083075444	0	lncRNA	19018-1_{1..1170}	lnc-DET1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DET1-2:1	chr15	 89147578	 89148747	-	lnc-DET1-2	lnc-DET1-2:1	XLOC_011569	linc-DET1-1	NA	NA	NA	inter
CUST_2632_PI429285431	0.9130165	A	0.8929567	A	1.01400150948574	0	lncRNA	2619-1_{1..929}	"transcript_id ""ENST00000447557.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447557.1"" | genecode_v17"	chr6	135027198	135028126	-	ENSG00000236389.1	ENST00000447557.1	RP1-287H17.1	RP1-287H17.1-001	NA	NA	NA	inter
LNCA_21_P0010395	0.8901293	A	0.8880079	A	1.0014715240594	0	lncRNA	TCONS_00029526	NA	NA	NA	NA	XLOC_014169	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014169), lincRNA [TCONS_00029526]"	chr22:23396878-23396937	hs|22q11.22	Agilent_HUMAN_G3V2	TCONS_00029526	TCONS_00029526	chr22	 23396878	 23396937	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15476_PI429285431	0.91601706	A	1.9393065	A	0.491993295196161	0	lncRNA	17164-1_{1..480}	lnc-TNFRSF14-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TNFRSF14-1:2	chr1	  2482826	  2483305	+	lnc-TNFRSF14-1	lnc-TNFRSF14-1:2	XLOC_000022	linc-TNFRSF14	TNFRSF14	NA	chr1:2487805-2493281	inter
CUST_39753_PI429285431	2.6155162	A	1.8674207	A	1.67957416255364	0	lncRNA	40675-1_{1..1064}	n405891|NR_003129_7|lncRNA|Homosapiens||RefGeneNoncode|NR_003129_7||-0.1916090|-0.1529296	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405891|NR_003129_7|lncRNA|Homosapiens||RefGeneNoncode|NR_003129_7||-0.1916090|-0.1529296	chr6	  3616912	  3617975	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012734	0.8911021	A	0.8886155	A	1.00172506599656	0	lncRNA	ENST00000509723	NA	NA	NA	NA	XLOC_l2_010751	NA	ENST00000509723	THC2663334	NA	"BROAD Institute lincRNA (XLOC_l2_010751), lincRNA [TCONS_l2_00021643]"	chr4:90575750-90575809	hs|4q22.1	Agilent_HUMAN_G3V2	ENST00000509723	ENST00000509723	chr4	 90575750	 90575809	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10489_PI429285431	0.890475	A	0.88951886	A	1.00066296540971	0	lncRNA	12017-1_{1..1900}	lnc-GPR133-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR133-1:1	chr12	131701391	131703290	+	lnc-GPR133-1	lnc-GPR133-1:1	XLOC_009957	linc-SFSWAP-3	NA	NA	NA	inter
CUST_10288_PI429285431	5.2141957	P	4.8474793	P	1.28941475704916	0	lncRNA	11814-1_{1..209}	lnc-MYC-2:19	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYC-2:19	chr8	129007129	129007337	+	lnc-MYC-2	lnc-MYC-2:19	XLOC_006924	linc-EFR3A-5	NA	NA	NA	inter
LNCA_33_P3338798	0.8922235	A	0.88949966	A	1.00188980545208	0	lncRNA	XR_108906	XR_108906	XR_108906	   442388	Hs.632065	SDR16C6P	"short chain dehydrogenase/reductase family 16C, member 6, pseudogene"	NA	NA	NA	"PREDICTED: Homo sapiens short chain dehydrogenase/reductase family 16C, member 6, pseudogene (SDR16C6P), miscRNA [XR_108906]"	chr8:57285688-57285629	hs|8q12.1	Agilent_HUMAN_G3V2	XR_108906	XR_108906	chr8	 57285629	 57285688	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39508_PI429285431	1.79568	A	1.6640072	A	1.09556326697707	0	lncRNA	40454-1_{1..1106}	n387277|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011bao.1||1.8801500|-0.1432316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387277|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011bao.1||1.8801500|-0.1432316	chr3	 46795973	 46797078	-	NA	NA	NA	NA	PRSS44	NA	chr3:46850844-46853976	inter
LNCA_21_P0013015	0.8930657	A	0.8901622	A	1.0020145793825	0	lncRNA	TCONS_l2_00024038	NA	NA	NA	NA	XLOC_l2_012397	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012397), lincRNA [TCONS_l2_00024038]"	chr6:11487896-11489312	hs|6p24.2	Agilent_HUMAN_G3V2	TCONS_l2_00024038	TCONS_l2_00024038	chr6	 11487896	 11489312	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15042_PI429285431	6.9987087	P	6.872621	P	1.09133021591952	0	lncRNA	16705-1_{1..561}	lnc-ARHGEF9-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGEF9-1:4	chrX	 62780712	 62781272	-	lnc-ARHGEF9-1	lnc-ARHGEF9-1:4	XLOC_008174	linc-SPIN4	NA	NA	NA	inter
CUST_23012_PI429285431	3.0319533	A	2.7761178	A	1.19402703311285	0	lncRNA	24584-1_{1..564}	lnc-AC073343.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC073343.1-1:1	chr7	  6748199	  6748762	+	lnc-AC073343.1-1	lnc-AC073343.1-1:1	ENSG00000228010.1	AC073343.13	ZNF12	NA	chr7:6738199-6746566	inter
CUST_6203_PI429285431	0.88624036	A	0.90526694	A	0.986898363248903	0	lncRNA	6129-1_{1..1884}	"transcript_id ""ENST00000591974.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000591974.1"" | genecode_v17"	chr18	 53750587	 53752470	-	ENSG00000267712.1	ENST00000591974.1	RP11-456O19.4	RP11-456O19.4-002	NA	NA	NA	inter
CUST_373_PI429201921	3.598652	P	2.5004385	A	2.14089419775638	0	lncRNA	239-3_{...	TC6_dbb_hap3000203.hg.1	TCONS_l2_00031100-XLOC_l2_016002 // Broad TUCP // linc-RNASEH1-13 chr6_dbb_hap3:+:4143825-4152862 // chr6_dbb_hap3 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6_dbb_hap3:+:4143825-4152862	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031100-XLOC_l2_016002	linc-RNASEH1-13	chr6_dbb_hap3	  4143825	  4152862	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10035_PI429285431	0.882637	A	0.88377523	A	0.999211350232501	0	lncRNA	11562-1_{1..459}	lnc-C20orf62-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf62-1:1	chr20	 43079177	 43079635	-	lnc-C20orf62-1	lnc-C20orf62-1:1	XLOC_013749	linc-FITM2	NA	NA	NA	inter
CUST_16980_PI429285431	0.9256989	A	0.93321586	A	0.994803190749025	0	lncRNA	18689-1_{1..1652}	lnc-RNASEH2B-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNASEH2B-3:4	chr13	 51205413	 51207064	+	lnc-RNASEH2B-3	lnc-RNASEH2B-3:4	XLOC_010390	linc-RNASEH2B-1	NA	NA	NA	inter
CUST_271_PI429285431	4.9346676	P	5.1590242	P	0.85597668126011	0	lncRNA	263-1_{1..1157}	"transcript_id ""ENST00000415842.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415842.1"" | genecode_v17"	chr1	 65445260	 65446416	-	ENSG00000226891.2	ENST00000415842.1	RP11-182I10.3	RP11-182I10.3-002	NA	NA	NA	inter
CUST_11783_PI429285431	0.89374214	A	1.5014695	A	0.656229629622612	0	lncRNA	13363-1_{1..387}	lnc-GPR27-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR27-1:2	chr3	 71837855	 71838241	+	lnc-GPR27-1	lnc-GPR27-1:2	XLOC_002701	linc-GXYLT2-3	PROK2	NA	chr3:71827855-71834357	inter
CUST_22905_PI429285431	1.7837873	A	1.5871824	A	1.14599829684669	0	lncRNA	24482-1_{1..448}	lnc-TOR1AIP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TOR1AIP2-3:1	chr1	179910614	179911061	-	lnc-TOR1AIP2-3	lnc-TOR1AIP2-3:1	ENSG00000261831.1	RP11-533E19.2	NA	NA	NA	inter
CUST_35200_PI429285431	6.3063974	P	5.7783327	P	1.44199353855015	0	lncRNA	36601-1_{1..2069}	n342184|AK002014|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4673|NULL|9.5259400|-0.1307078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342184|AK002014|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4673|NULL|9.5259400|-0.1307078	chr6	170151720	170153788	+	NA	NA	NA	NA	TCTE3	NA	chr6:170141720-170151638	inner
CUST_25211_PI429285431	0.9205413	A	0.9222176	A	0.998838752151944	0	lncRNA	26742-1_{1..758}	lnc-WRN-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-WRN-7:2	chr8	 31920620	 31921377	+	lnc-WRN-7	lnc-WRN-7:2	ENSG00000253974.1	NRG1-IT1	NRG1	NA	chr8:31910620-31930988	inner
CUST_31927_PI429285431	4.370581	P	4.639233	P	0.830094792939614	0	lncRNA	33655-1_{1..1305}	n338481|BC015457|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|878|NULL|-0.6505010|-0.2280135	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n338481|BC015457|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|878|NULL|-0.6505010|-0.2280135	chr1	204337558	204338862	-	NA	NA	NA	NA	PLEKHA6	NA	chr1:204327558-204329044	inter
CUST_3881_PI429285431	4.9332333	P	5.00135	P	0.953882387617156	0	lncRNA	3850-1_{1..554}	"transcript_id ""ENST00000527283.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527283.1"" | genecode_v17"	chr11	 24257023	 24257576	-	ENSG00000254594.1	ENST00000527283.1	RP11-2F20.1	RP11-2F20.1-002	NA	NA	NA	inter
CUST_33410_PI429285431	0.91506237	A	0.9016686	A	1.00932708255688	0	lncRNA	34989-1_{1..2269}	n340135|CR597213|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2594|NULL|-0.9543100|-0.2827217	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340135|CR597213|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2594|NULL|-0.9543100|-0.2827217	chr4	 81116184	 81118452	-	NA	NA	NA	NA	PRDM8	NA	chr4:81106424-81125483	inner
LNCA_21_P0005770	0.9014057	A	0.9041679	A	0.998087220556587	0	lncRNA	TCONS_00014870	NA	NA	NA	NA	XLOC_006939	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006939), lincRNA [TCONS_00014870]"	chr8:138729083-138729142	hs|8q24.23	Agilent_HUMAN_G3V2	TCONS_00014870	TCONS_00014870	chr8	138729083	138729142	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001817	0.90055126	A	1.9476628	A	0.483936097140979	0	lncRNA	ENST00000417930	NA	NA	NA	NA	XLOC_001331	NA	ENST00000417930	THC2747310	NA	"BROAD Institute lincRNA (XLOC_001331), lincRNA [TCONS_00002811]"	chr2:7865973-7870694	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000417930	ENST00000417930	chr2	  7865973	  7870694	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27872_PI429285431	0.88816774	A	0.8896805	A	0.998951984223663	0	lncRNA	29465-1_{1..598}	n325108|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000131317|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000131317|-0.8201620|-0.3012198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325108|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000131317|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000131317|-0.8201620|-0.3012198	chr2	234682098	234682695	+	NA	NA	NA	NA	UGT1A10	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-59.20chr2:234672098-234681951"	NA	inter
CUST_3215_PI429285431	1.2412544	A	0.89350295	A	1.27257567484818	0	lncRNA	3194-1_{1..677}	"transcript_id ""ENST00000520459.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520459.1"" | genecode_v17"	chr8	 86436128	 86436804	+	ENSG00000254380.1	ENST00000520459.1	RP11-317J10.4	RP11-317J10.4-001	NA	NA	NA	inter
CUST_51948_PI429285431	5.426441	P	6.919851	P	0.35517205998148	0	lncRNA	55490-1_{1..1044}	hg19_lincRNAsTranscripts_TCONS_l2_00016536 range=chr20:25754615-25776952 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016536 range=chr20:25754615-25776952 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	 25754615	 25755658	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51965_PI429285431	8.44997	P	8.986874	P	0.689248439020676	0	lncRNA	55507-1_{1..1224}	hg19_lincRNAsTranscripts_TCONS_l2_00016248 range=chr20:37230676-37256614 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016248 range=chr20:37230676-37256614 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 37230676	 37231899	+	NA	NA	NA	NA	ARHGAP40	NA	chr20:37230577-37266614	inner
LNCA_21_P0012872	3.71411	P	4.2368355	P	0.696055621055056	0	lncRNA	TCONS_l2_00022667	NA	NA	NA	NA	XLOC_l2_011873	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011873), lincRNA [TCONS_l2_00022667]"	chr5:177384712-177384771	hs|5q35.3	Agilent_HUMAN_G3V2	TCONS_l2_00022667	TCONS_l2_00022667	chr5	177384712	177384771	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7911_PI429285431	0.89675194	A	0.9165785	A	0.986351275970859	0	lncRNA	9526-1_{1..1209}	lnc-TMEM88B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM88B-1:1	chr1	  1365360	  1366568	+	lnc-TMEM88B-1	lnc-TMEM88B-1:1	ENSG00000203586	AL391244.1	VWA1	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-60.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.97;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80chr1:1370903-1375634"	NA	inter
CUST_16767_PI429285431	4.3814273	P	4.1418533	P	1.18064398857176	0	lncRNA	18475-1_{1..967}	lnc-SIK1-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIK1-4:5	chr21	 44897944	 44898910	-	lnc-SIK1-4	lnc-SIK1-4:5	XLOC_014105	linc-SIK1-2	NA	NA	NA	inter
CUST_15669_PI429285431	0.9225573	A	1.2840376	A	0.778365515571297	0	lncRNA	17357-1_{1..3000}	lnc-VSTM2B-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VSTM2B-6:4	chr19	 29461311	 29464310	+	lnc-VSTM2B-6	lnc-VSTM2B-6:4	XLOC_013027	linc-VSTM2B-6	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
CUST_8887_PI429285431	0.8908058	A	0.90404606	A	0.990864535360905	0	lncRNA	10424-1_{1..2820}	lnc-RP11-62N21.1.1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-62N21.1.1-5:2	chr4	134070184	134073003	-	lnc-RP11-62N21.1.1-5	lnc-RP11-62N21.1.1-5:2	ENSG00000250241	RP11-9G1.3	PCDH10	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50chr4:134060184-134080268"	NA	inter
LNCA_21_P0004184	2.4037647	A	3.5285885	P	0.458558023035447	0	lncRNA	TCONS_00009797	NA	NA	NA	NA	XLOC_005041	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005041), lincRNA [TCONS_00009797]"	chr5:144818710-144818651	hs|5q32	Agilent_HUMAN_G3V2	TCONS_00009797	TCONS_00009797	chr5	144818651	144818710	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40390_PI429285431	0.8950597	A	1.3802052	A	0.714425014392018	0	lncRNA	41183-1_{1..3000}	n409244|NR_033411|lncRNA|Homosapiens||RefGeneNoncode|NR_033411||10.8076000|-0.2513982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409244|NR_033411|lncRNA|Homosapiens||RefGeneNoncode|NR_033411||10.8076000|-0.2513982	chr22	 32455156	 32458155	+	NA	NA	NA	NA	SLC5A1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90chr22:32445156-32509016"	NA	inner
CUST_44100_PI429285431	11.91674	P	12.376054	P	0.727332022072904	0	lncRNA	48765-1_{1..1136}	"gi|284172359|ref|NR_033255.1| Homo sapiens deoxythymidylate kinase (thymidylate kinase) (DTYMK), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|284172359|ref|NR_033255.1| Homo sapiens deoxythymidylate kinase (thymidylate kinase) (DTYMK), transcript variant 3, non-coding RNA"	Chr2	242615157	242616292	-	1841	NR_033255.1	NA	NA	NA	NA	NA	inter
CUST_34516_PI429285431	0.89008665	A	1.5148437	A	0.648528980480376	0	lncRNA	35980-1_{1..2450}	n341394|AK023946|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3863|NULL|1.0006300|-0.3043979	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341394|AK023946|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3863|NULL|1.0006300|-0.3043979	chr8	  6503575	  6506024	+	NA	NA	NA	NA	MCPH1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10chr8:6493575-6501140"	NA	inter
CUST_17481_PI429285431	0.9056836	A	1.1973081	A	0.816981604769841	0	lncRNA	19208-1_{1..434}	lnc-STRA6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STRA6-1:2	chr15	 74448468	 74448901	-	lnc-STRA6-1	lnc-STRA6-1:2	XLOC_011529	linc-GOLGA6A	NA	NA	NA	inter
CUST_10202_PI429285431	1.0803688	A	1.4795067	A	0.758311286041564	0	lncRNA	11728-1_{1..211}	lnc-AC069257.9.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC069257.9.1-5:1	chr3	195377016	195377226	+	lnc-AC069257.9.1-5	lnc-AC069257.9.1-5:1	XLOC_002996	linc-MUC20-2	NA	"hg19_refFlat_PPP4R2:range=chr3:73046189-731148735'pad=0,hg19_refFlat_PPP4R2:range=chr3:73046189-731148735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	inter
CUST_2046_PI429285431	0.8932738	A	0.89353013	A	0.999822341366371	0	lncRNA	2038-1_{1..686}	"transcript_id ""ENST00000506305.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506305.1"" | genecode_v17"	chr5	  4033826	  4034511	-	ENSG00000249994.1	ENST00000506305.1	CTD-2383I20.1	CTD-2383I20.1-001	NA	NA	NA	inter
CUST_4312_PI429285431	1.5252767	A	1.6879817	A	0.893348504167039	0	lncRNA	4266-1_{1..444}	"transcript_id ""ENST00000546170.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546170.1"" | genecode_v17"	chr12	 68323043	 68323486	+	ENSG00000255772.1	ENST00000546170.1	GS1-410F4.4	GS1-410F4.4-001	NA	NA	NA	inter
CUST_27195_PI429285431	0.8936881	A	1.4326344	A	0.688273419234247	0	lncRNA	28737-1_{1..420}	n324327|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042902|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042902|-1.1003400|-0.3096959	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324327|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042902|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042902|-1.1003400|-0.3096959	chr6	159694943	159695362	-	NA	NA	NA	NA	FNDC1	NA	chr6:159684943-159693140	inter
CUST_45324_PI429285431	9.22812	P	10.052488	P	0.564729538738453	0	lncRNA	49766-1_{1..1782}	"gi|391738244|ref|NR_052010.1| Homo sapiens interleukin 11 receptor, alpha (IL11RA), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|391738244|ref|NR_052010.1| Homo sapiens interleukin 11 receptor, alpha (IL11RA), transcript variant 4, non-coding RNA"	Chr9	 34653894	 34655675	+	3590	NR_052010.1	NA	NA	NA	NA	NA	inter
CUST_34567_PI429285431	1.076277	A	0.91156626	A	1.12094130704031	0	lncRNA	36027-1_{1..2069}	n341449|AK126395|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3919|NULL|-1.0874400|-0.2057199	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341449|AK126395|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3919|NULL|-1.0874400|-0.2057199	chr13	114181414	114183482	+	NA	NA	NA	NA	TMCO3	NA	chr13:114171414-114193483	inner
CUST_49417_PI429285431	0.89149284	A	0.8977617	A	0.995664184273441	0	lncRNA	53223-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00023267 range=chr5:175602228-175626411 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023267 range=chr5:175602228-175626411 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175602228	175605227	-	NA	NA	NA	NA	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_219_PI429285431	10.807927	P	10.715919	P	1.06585264639361	0	lncRNA	209-1_{1..614}	"transcript_id ""ENST00000437643.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437643.1"" | genecode_v17"	chr1	 44514064	 44514677	+	ENSG00000230615.1	ENST00000437643.1	RP5-1198O20.4	RP5-1198O20.4-005	NA	NA	NA	inter
CUST_258_PI429285431	1.9105551	A	2.4470305	A	0.689453233352009	0	lncRNA	250-1_{1..447}	"transcript_id ""ENST00000450811.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450811.1"" | genecode_v17"	chr1	 63361680	 63362126	+	ENSG00000234318.1	ENST00000450811.1	RP4-771M4.3	RP4-771M4.3-001	NA	NA	NA	inter
CUST_50865_PI429285431	0.89053607	A	0.8963711	A	0.99596363352127	0	lncRNA	54509-1_{1..601}	hg19_lincRNAsTranscripts_TCONS_l2_00005193 range=chr11:111271247-111275419 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005193 range=chr11:111271247-111275419 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	111271247	111271847	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50189_PI429285431	0.9091238	A	1.1312952	A	0.857274181758832	0	lncRNA	53914-1_{1..1334}	hg19_lincRNAsTranscripts_TCONS_l2_00028727 range=chr9:38435116-38462264 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028727 range=chr9:38435116-38462264 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 38435116	 38436449	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9612_PI429285431	3.3034647	P	3.1812758	P	1.08838494057052	0	lncRNA	11128-1_{1..784}	lnc-VCX-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VCX-2:1	chrX	  8030652	  8031435	+	lnc-VCX-2	lnc-VCX-2:1	XLOC_007925	linc-VCX3B-2	NA	NA	NA	inter
CUST_46344_PI429285431	0.90290153	A	0.91953254	A	0.988538452093143	0	lncRNA	50568-1_{1..1164}	"gi|210147593|ref|NR_024338.1| Homo sapiens long intergenic non-protein coding RNA 238 (LINC00238), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|210147593|ref|NR_024338.1| Homo sapiens long intergenic non-protein coding RNA 238 (LINC00238), transcript variant 1, non-coding RNA"	Chr14	 66953109	 66954272	+	440184	NR_024338.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003422	0.9053615	A	0.91170377	A	0.995613522251232	0	lncRNA	ENST00000510753	NA	BC038562	NA	Hs.573038	XLOC_003755	NA	ENST00000510753	THC2616357	NA	"BROAD Institute lincRNA (XLOC_003755), lincRNA [TCONS_00007666]"	chr4:157507171-157507230	hs|4q32.1	Agilent_HUMAN_G3V2	ENST00000510753	ENST00000510753	chr4	157507171	157507230	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009504	0.904324	A	2.4521987	A	0.342013529019613	0	lncRNA	TCONS_00026374	NA	NA	NA	NA	XLOC_012725	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012725), lincRNA [TCONS_00026374]"	chr18:73971940-73971999	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026374	TCONS_00026374	chr18	 73971940	 73971999	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28033_PI429285431	1.9179921	A	0.8808583	A	2.05214660427188	0	lncRNA	29647-1_{1..932}	n325294|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326577|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326577|-1.1502900|-0.2932726	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325294|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326577|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326577|-1.1502900|-0.2932726	chr2	 62692510	 62693441	-	NA	NA	NA	NA	TMEM17	"hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90chr2:62727356-62733604"	NA	inner
CUST_45520_PI429285431	3.7905004	P	3.7581358	P	1.02268695289606	0	lncRNA	49929-1_{1..3000}	"gi|322309226|ref|NR_037774.1| Homo sapiens signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 (STAM), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|322309226|ref|NR_037774.1| Homo sapiens signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 (STAM), transcript variant 2, non-coding RNA"	NW_003315932.1	    72916	    75915	+	8027	NR_037774.1	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00813352	7.5091214	P	7.608872	P	0.933194299738504	0	lncRNA	TCONS_00026520	NA	NA	NA	NA	XLOC_012841	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012841), lincRNA [TCONS_00026520]"	chr18:46521362-46521303	hs|18q21.1	Agilent_HUMAN_G3V2	TCONS_00026520	TCONS_00026520	chr18	 46521303	 46521362	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8807_PI429285431	1.4728541	A	1.1659026	A	1.23709088991409	0	lncRNA	10348-1_{1..2239}	lnc-MRPL15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MRPL15-1:1	chr8	 54821350	 54823588	+	lnc-MRPL15-1	lnc-MRPL15-1:1	ENSG00000251475	AC113194.1	RGS20	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80chr8:54811350-54831517"	NA	inner
LNCA_21_P0007698	0.8991849	A	1.0212175	A	0.918892119408545	0	lncRNA	TCONS_00020754	NA	NA	NA	NA	XLOC_010043	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010043), lincRNA [TCONS_00020754]"	chr12:31903182-31903123	hs|12p11.21	Agilent_HUMAN_G3V2	TCONS_00020754	TCONS_00020754	chr12	 31903123	 31903182	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_59_PI429201921	4.498299	P	4.6503196	P	0.899989078908977	0	lncRNA	61-1_{1..1796}	TC20001183.hg.1	 TCONS_l2_00016232-XLOC_l2_008604 // Broad TUCP // linc-HM13 chr20:+:30074838-30075152 // chr20 // 100 // 100 // 0 // --- // 0///TCONS_l2_00016757-XLOC_l2_008604 // Broad TUCP // linc-HM13 chr20:+:30073580-30075377 // chr20 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr20:+:30073580-30075377	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00016757-XLOC_l2_008604	linc-HM13	chr20	 30073580	 30075377	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006644	2.0701284	A	0.9010763	A	2.24863905112131	0	lncRNA	ENST00000428920	NA	NA	NA	NA	XLOC_008363	NA	ENST00000428920	NA	NA	"BROAD Institute lincRNA (XLOC_008363), lincRNA [TCONS_00017775]"	chr10:5304974-5305033	hs|10p15.1	Agilent_HUMAN_G3V2	ENST00000428920	ENST00000428920	chr10	  5304974	  5305033	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51014_PI429285431	0.9037657	A	0.95649266	A	0.964112255378024	0	lncRNA	54660-1_{1..412}	hg19_lincRNAsTranscripts_TCONS_l2_00006951 range=chr13:81231053-81270425 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006951 range=chr13:81231053-81270425 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 81231053	 81231464	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35141_PI429285431	7.7907333	P	8.490008	P	0.615881757033328	0	lncRNA	36543-1_{1..1508}	n342111|AJ420569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4593|NULL|-1.1494500|-0.2985188	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342111|AJ420569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4593|NULL|-1.1494500|-0.2985188	chr6	116571126	116572633	-	NA	NA	NA	NA	NT5DC1	NA	chr6:116561126-116566853	inner
CUST_15132_PI429285431	1.4306988	A	0.89742917	A	1.44720533354068	0	lncRNA	16792-1_{1..665}	lnc-AL078585.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL078585.1-5:1	chr6	164092353	164093017	-	lnc-AL078585.1-5	lnc-AL078585.1-5:1	XLOC_005912	linc-PARK2-2	NA	NA	NA	inter
CUST_5648_PI429285431	5.4784203	P	5.3958883	P	1.05887478752235	0	lncRNA	5576-1_{1..501}	"transcript_id ""ENST00000563626.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563626.1"" | genecode_v17"	chr16	 80864428	 80864928	-	ENSG00000260896.1	ENST00000563626.1	RP11-314O13.1	RP11-314O13.1-003	NA	NA	NA	inter
CUST_19657_PI429285431	2.6005437	A	2.547745	A	1.03727519491285	0	lncRNA	21313-1_{1..539}	lnc-RASGEF1B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RASGEF1B-1:3	chr4	 82965154	 82965692	-	lnc-RASGEF1B-1	lnc-RASGEF1B-1:3	ENSG00000251331.1	RP11-689K5.3	NA	NA	NA	inter
CUST_33082_PI429285431	9.283239	P	10.106386	P	0.565207690126996	0	lncRNA	34686-1_{1..1053}	n339770|BC039412|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2217|NULL|-0.7824040|-0.0497568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339770|BC039412|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2217|NULL|-0.7824040|-0.0497568	chr4	   655334	   656386	-	NA	NA	NA	NA	PDE6B	"hg19_refFlat_PDE6B:range=chr4:647767-6638965'pad=0,hg19_refFlat_PDE6B:range=chr4:647767-6638965'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_PDE6B:range=chr4:619416-6638965'pad=0,hg19_refFlat_PDE6B:range=chr4:619416-6638965'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80chr4:645334-664681"	NA	inner
CUST_21044_PI429285431	0.89112073	A	0.8875862	A	1.00245295308276	0	lncRNA	22671-1_{1..586}	lnc-MRC2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRC2-1:4	chr17	 60813447	 60814032	+	lnc-MRC2-1	lnc-MRC2-1:4	ENSG00000265702.1	RP11-156L14.1	10-Mar	"hg19_refFlat_MARCH10:range=chr17:60779064-608790965'pad=0,hg19_refFlat_MARCH10:range=chr17:60779064-608790965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60chr17:60803447-60823895"	NA	inter
CUST_16528_PI429285431	1.423392	A	1.6466665	A	0.856618951315321	0	lncRNA	18227-1_{1..2428}	lnc-EPG5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPG5-1:1	chr18	 42258966	 42261393	-	lnc-EPG5-1	lnc-EPG5-1:1	XLOC_012833	linc-SYT4-1	SETBP1	NA	chr18:42260138-42269599	inter
CUST_10084_PI429285431	1.1355274	A	1.1481186	A	0.991310419771059	0	lncRNA	11611-1_{1..657}	lnc-GBP5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GBP5-2:2	chr1	 90098216	 90098872	-	lnc-GBP5-2	lnc-GBP5-2:2	XLOC_000909	linc-GBP5-2	LRRC8C	NA	chr1:90098644-90108507	inter
CUST_32816_PI429285431	6.8110185	P	6.588455	P	1.16680502134525	0	lncRNA	34451-1_{1..1802}	n339464|AL109783|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1902|NULL|1.1604500|-0.2352764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339464|AL109783|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1902|NULL|1.1604500|-0.2352764	chr21	 33632114	 33633915	-	NA	NA	NA	NA	MIS18A	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90chr21:33640530-33643896"	NA	inter
CUST_13174_PI429285431	0.883114	A	0.88333726	A	0.999845259933947	0	lncRNA	14801-1_{1..2194}	lnc-SLC4A1AP-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC4A1AP-1:4	chr2	 27977428	 27979621	+	lnc-SLC4A1AP-1	lnc-SLC4A1AP-1:4	XLOC_001406	linc-MRPL33	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00"	NA	inter
CUST_19138_PI429285431	0.8977089	A	0.92856777	A	0.97883739936837	0	lncRNA	20813-6_{15001..17538}	lnc-MYB-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYB-6:1	NA	    15000	    17537	NA	NA	NA	NA	NA	NA	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00"	NA	Unknown
LNCA_21_P0007495	0.8897736	A	0.8879247	A	1.00128238137084	0	lncRNA	TCONS_00020214	NA	NA	NA	NA	XLOC_010123	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010123), lincRNA [TCONS_00020214]"	chr12:70116164-70116105	hs|12q15	Agilent_HUMAN_G3V2	TCONS_00020214	TCONS_00020214	chr12	 70116105	 70116164	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31212_PI429285431	3.6395025	P	4.176111	P	0.689389628785687	0	lncRNA	33004-1_{1..910}	n337659|BC039399|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|39|NULL|1.8041900|-0.2440012	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337659|BC039399|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|39|NULL|1.8041900|-0.2440012	chrX	 40594651	 40595560	+	NA	NA	NA	NA	MED14	NA	chrX:40584651-40594804	inner
CUST_19951_PI429285431	3.266966	P	3.4891014	P	0.857295573844286	0	lncRNA	21606-1_{1..577}	lnc-SPATA9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPATA9-1:2	chr5	 95067645	 95068221	-	lnc-SPATA9-1	lnc-SPATA9-1:2	ENSG00000250240.1	CTD-2154I11.2	RHOBTB3	"hg19_refFlat_RHOBTB3:range=chr5:95067387-951288785'pad=0,hg19_refFlat_RHOBTB3:range=chr5:95067387-951288785'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.10chr5:95066850-95077991"	NA	inner
CUST_37329_PI429285431	2.9546008	A	2.8412359	A	1.08174833484901	0	lncRNA	38435-1_{1..3000}	n345772|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1321|NULL|-1.4187300|-0.2045156	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345772|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1321|NULL|-1.4187300|-0.2045156	chr6	  6885867	  6888866	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29561_PI429285431	15.324158	P	15.717251	P	0.761495280236919	0	lncRNA	31321-1_{1..309}	n333054|AF238978|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000074786|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000074786|1.1415600|-0.0678661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333054|AF238978|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000074786|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000074786|1.1415600|-0.0678661	chr14	 94594108	 94594416	-	NA	NA	NA	NA	IFI27L2	NA	chr14:94594118-94595957	inner
CUST_45310_PI429285431	2.8813841	A	2.8060594	A	1.05359813722061	0	lncRNA	49752-1_{1..1805}	"gi|383792200|ref|NR_047535.1| Homo sapiens CDKN2B antisense RNA 1 (CDKN2B-AS1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|383792200|ref|NR_047535.1| Homo sapiens CDKN2B antisense RNA 1 (CDKN2B-AS1), transcript variant 5, non-coding RNA"	Chr9	 21994790	 21996594	+	100048912	NR_047535.1	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10"	NA	inter
LNCA_33_P3406552	2.1221373	A	2.4722645	A	0.78451492548332	0	lncRNA	XR_108437	XR_108437	XR_108437	   150596	Hs.470217	FLJ32955	uncharacterized protein FLJ32955	NA	THC2487379	NA	"PREDICTED: Homo sapiens hypothetical protein FLJ32955 (FLJ32955), miscRNA [XR_108437]"	chr2:150624081-150624022	hs|2q23.3	Agilent_HUMAN_G3V2	XR_108437	XR_108437	chr2	150624022	150624081	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23125_PI429285431	1.8957059	A	2.3604784	A	0.724585328842173	0	lncRNA	24696-1_{1..739}	lnc-ZCCHC7-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZCCHC7-3:1	chr9	 37007447	 37008185	+	lnc-ZCCHC7-3	lnc-ZCCHC7-3:1	ENSG00000250850.2	RP11-297B17.3	PAX5	"hg19_refFlat_PAX5:range=chr9:36840557-370340285'pad=0,hg19_refFlat_PAX5:range=chr9:36840557-370340285'pad=0 3'pad=0 strand=- repeatMasking=none,-94.10chr9:36997447-37018037"	NA	inner
CUST_48351_PI429285431	7.629635	P	7.6393414	P	0.993294618282837	0	lncRNA	52208-1_{1..313}	hg19_lincRNAsTranscripts_TCONS_l2_00000323 range=chr1:69521558-69554218 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000323 range=chr1:69521558-69554218 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 69521558	 69521870	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21171_PI429285431	1.1583489	A	1.3107383	A	0.899759041692361	0	lncRNA	22795-1_{1..2434}	lnc-KLHL36-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL36-1:1	chr16	 84627999	 84630432	+	lnc-KLHL36-1	lnc-KLHL36-1:1	ENSG00000261471.1	RP11-61F12.1	COTL1	NA	chr16:84617999-84640432	inner
CUST_44962_PI429285431	6.9312105	P	7.7069483	P	0.584089842012296	0	lncRNA	49473-1_{1..551}	"gi|397139211|ref|XR_158825.1| PREDICTED: Homo sapiens uncharacterized LOC100289098 (LOC100289098), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139211|ref|XR_158825.1| PREDICTED: Homo sapiens uncharacterized LOC100289098 (LOC100289098), misc_RNA"	Chr7	 65958671	 65959221	+	100289098	XR_158825.2	NA	NA	NA	NA	NA	inter
CUST_27185_PI429285431	0.90215594	A	1.0496475	A	0.90281884620843	0	lncRNA	28725-1_{1..448}	n324314|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043021|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043021|-1.2720300|-0.3995748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324314|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043021|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043021|-1.2720300|-0.3995748	chr6	164449641	164450088	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37256_PI429285431	2.630019	A	2.3112557	A	1.24726091959929	0	lncRNA	38363-1_{1..755}	n345690|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1239|NULL|-1.3279900|-0.2149231	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n345690|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1239|NULL|-1.3279900|-0.2149231	chr8	 22928766	 22929520	-	NA	NA	NA	NA	TNFRSF10B	NA	chr8:22918766-22926700	inter
CUST_10291_PI429285431	1.2811813	A	1.2471741	A	1.02385201011266	0	lncRNA	11817-1_{1..451}	lnc-TAF13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TAF13-1:1	chr1	109627227	109627677	-	lnc-TAF13-1	lnc-TAF13-1:1	XLOC_000951	linc-TAF13	TAF13	NA	chr1:109617227-109618624	inter
CUST_31331_PI429285431	0.9171095	A	0.9215097	A	0.99695466025898	0	lncRNA	33114-1_{1..652}	n337798|AF085872|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|180|NULL|-0.9087410|-0.2740108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337798|AF085872|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|180|NULL|-0.9087410|-0.2740108	chrX	100882857	100883508	+	NA	NA	NA	NA	LOC100128574	NA	chrX:100877747-100879148	inter
CUST_42331_PI429285431	4.6882844	P	4.169156	P	1.43308918977582	0	lncRNA	44982-1_{1..125}	ENST00000384151 ncrna:snoRNA chromosome:GRCh37:1:228788183:228788307:1 gene:ENSG00000206878 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384151 ncrna:snoRNA chromosome:GRCh37:1:228788183:228788307:1 gene:ENSG00000206878 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	228788183	228788307	+	ENSG00000206878	ENST00000384151	NA	NA	RHOU	NA	chr1:228780394-228798307	inter
LNCA_21_P0010993	0.89889497	A	0.8954028	A	1.00242351977739	0	lncRNA	THC2690892	NA	NA	NA	NA	XLOC_l2_002433	NA	NA	THC2690892	NA	"BROAD Institute lincRNA (XLOC_l2_002433), lincRNA [TCONS_l2_00004711]"	chr11:088161028-088161087	hs|11q14.2	Agilent_HUMAN_G3V2	THC2690892	THC2690892	chr11	 88161028	 88161087	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26373_PI429285431	5.8070235	P	5.9997663	P	0.874940733209645	0	lncRNA	27880-1_{1..266}	lnc-SERP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SERP2-1:2	chr13	 44812964	 44813229	+	lnc-SERP2-1	lnc-SERP2-1:2	ENSG00000227258.1	C13orf44-AS1	NA	NA	NA	inter
CUST_31201_PI429285431	5.1635556	P	5.79848	P	0.643974559378517	0	lncRNA	32995-1_{1..1711}	n337645|BC029954|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|24|NULL|-0.7095880|-0.0945821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337645|BC029954|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|24|NULL|-0.7095880|-0.0945821	chr1	  2253783	  2255493	-	NA	NA	NA	NA	MORN1	NA	chr1:2252696-2265494	inner
CUST_10644_PI429285431	1.176157	A	1.7629213	A	0.665834578317379	0	lncRNA	12176-1_{1..380}	lnc-STAG2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STAG2-1:1	chrX	124338891	124339270	+	lnc-STAG2-1	lnc-STAG2-1:1	XLOC_008062	linc-LOC100129520	NA	NA	NA	inter
CUST_18178_PI429285431	3.67218	P	3.5868433	P	1.06093531637889	0	lncRNA	19914-1_{1..410}	lnc-SMARCA5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SMARCA5-2:2	chr4	144902939	144903348	+	lnc-SMARCA5-2	lnc-SMARCA5-2:2	ENSG00000251600	RP11-673E1.1	NA	NA	NA	inter
CUST_28697_PI429285431	0.901335	A	0.9019833	A	0.999550733633214	0	lncRNA	30396-1_{1..657}	n326085|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046557|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046557|-0.0993807|-0.3662382	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326085|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046557|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046557|-0.0993807|-0.3662382	chr10	  5698830	  5699486	-	NA	NA	NA	NA	ASB13	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30chr10:5688830-5708558"	NA	inter
LNCA_21_P0003910	0.9013475	A	0.89777255	A	1.00248103920965	0	lncRNA	TCONS_00009177	NA	NA	NA	NA	XLOC_004182	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004182), lincRNA [TCONS_00009177]"	chr4:178141591-178141532	hs|4q34.3	Agilent_HUMAN_G3V2	TCONS_00009177	TCONS_00009177	chr4	178141532	178141591	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19277_PI429285431	3.896182	P	4.802503	P	0.533543942154265	0	lncRNA	20945-1_{1..558}	lnc-LPO-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LPO-1:11	chr17	 56429096	 56429653	+	lnc-LPO-1	lnc-LPO-1:11	ENSG00000265148.1	RP5-1171I10.4	RNF43	NA	chr17:56431037-56439104	inner
CUST_49605_PI429285431	1.0379058	A	0.906804	A	1.09512974303163	0	lncRNA	53395-1_{1..271}	hg19_lincRNAsTranscripts_TCONS_l2_00024523 range=chr6:167560024-167563500 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024523 range=chr6:167560024-167563500 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	167560024	167560294	+	NA	NA	NA	NA	CCR6	NA	chr6:167550024-167552629	inter
CUST_30824_PI429285431	0.88591653	A	0.886144	A	0.999842342240129	0	lncRNA	32611-1_{1..216}	n336753|Z77841|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328132|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328132|-0.0332667|-0.1715933	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336753|Z77841|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328132|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328132|-0.0332667|-0.1715933	chr7	142326906	142327121	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48005_PI429285431	2.3688538	A	2.1349475	A	1.17601486812531	0	lncRNA	51890-1_{1..677}	"gi|410173250|ref|XR_172170.1| PREDICTED: Homo sapiens uncharacterized LOC100132529 (LOC100132529), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173250|ref|XR_172170.1| PREDICTED: Homo sapiens uncharacterized LOC100132529 (LOC100132529), misc_RNA"	NA	NA	NA	NA	NA	XR_172170.1	NA	NA	NA	"hg19_refFlat_TAT:range=chr16:71602047-716103185'pad=0,hg19_refFlat_TAT:range=chr16:71602047-716103185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00"	NA	Unknown
CUST_24927_PI429285431	2.899377	A	3.4524229	P	0.681579618530212	0	lncRNA	26467-1_{1..503}	lnc-TSTD2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSTD2-2:1	chr9	100278495	100278997	-	lnc-TSTD2-2	lnc-TSTD2-2:1	ENSG00000228174.1	RP11-244N9.6	TMOD1	NA	chr9:100268495-100288620	inner
CUST_20594_PI429285431	4.5541153	P	5.2597523	P	0.613171692235991	0	lncRNA	22233-1_{1..130}	lnc-ZC3H12D-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZC3H12D-2:1	chr6	149353661	149353790	-	lnc-ZC3H12D-2	lnc-ZC3H12D-2:1	ENSG00000236591.1	RP11-162J8.3	UST	NA	chr6:149343661-149363709	inner
LNCA_21_P0008063	2.0783608	A	3.5502076	P	0.360520499557678	0	lncRNA	TCONS_00021787	NA	NA	NA	NA	XLOC_010385	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010385), lincRNA [TCONS_00021787]"	chr13:47844386-47844445	hs|13q14.2	Agilent_HUMAN_G3V2	TCONS_00021787	TCONS_00021787	chr13	 47844386	 47844445	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39820_PI429285431	0.9269708	A	0.88723713	A	1.02792404830716	0	lncRNA	40730-1_{1..3000}	n406301|NR_003955|lncRNA|Homosapiens||RefGeneNoncode|NR_003955||4.7106900|-0.4417704	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406301|NR_003955|lncRNA|Homosapiens||RefGeneNoncode|NR_003955||4.7106900|-0.4417704	chr1	121260909	121263908	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50845_PI429285431	0.8968426	A	0.9068711	A	0.993072877391808	0	lncRNA	54490-1_{1..460}	hg19_lincRNAsTranscripts_TCONS_l2_00005381 range=chr11:71125206-71134469 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005381 range=chr11:71125206-71134469 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	 71125206	 71125665	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12990_PI429285431	0.8850673	A	0.8976033	A	0.991348349742731	0	lncRNA	14617-1_{1..447}	lnc-DROSHA-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DROSHA-6:1	chr5	 30101942	 30102388	-	lnc-DROSHA-6	lnc-DROSHA-6:1	XLOC_004766	linc-CDH9-5	NA	NA	NA	inter
CUST_2361_PI429285431	0.8839845	A	0.89292085	A	0.993824938736982	0	lncRNA	2354-1_{1..1044}	"transcript_id ""ENST00000514853.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000514853.2"" | genecode_v17"	chr5	127039082	127040125	+	ENSG00000230561.3	ENST00000514853.2	CTC-228N24.1	CTC-228N24.1-001	NA	NA	NA	inter
CUST_37108_PI429285431	0.88960683	A	0.8984353	A	0.993899256482591	0	lncRNA	38233-1_{1..1100}	n345551|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1100|NULL|-1.3651100|-0.2734342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345551|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1100|NULL|-1.3651100|-0.2734342	chr2	174831631	174832730	-	NA	NA	NA	NA	SP3	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80chr2:174821631-174830430"	NA	inter
CUST_20097_PI429285431	2.4880455	A	1.829016	A	1.57902006062345	0	lncRNA	21745-1_{1..2131}	lnc-ZCCHC17-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ZCCHC17-4:2	chr1	 31199090	 31201220	+	lnc-ZCCHC17-4	lnc-ZCCHC17-4:2	ENSG00000186056.4	RP5-1166H10.2	MATN1	"hg19_refFlat_MATN1:range=chr1:31186429-311963985'pad=0,hg19_refFlat_MATN1:range=chr1:31186429-311963985'pad=0 3'pad=0 strand=- repeatMasking=none,-102.10chr1:31189090-31196432"	NA	inter
CUST_8827_PI429285431	4.053965	P	4.1096077	P	0.962165716552103	0	lncRNA	10368-1_{1..802}	lnc-WDR5-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR5-3:4	chr9	136893948	136894749	+	lnc-WDR5-3	lnc-WDR5-3:4	ENSG00000235106	NCRNA00094	BRD3	NA	chr9:136895427-136904637	inter
CUST_27264_PI429285431	1.1431904	A	1.1585978	A	0.989377228547042	0	lncRNA	28817-1_{1..251}	n324410|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041917|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041917|-1.0756700|-0.2381357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324410|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041917|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041917|-1.0756700|-0.2381357	chr6	114905206	114905456	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44663_PI429285431	1.1961191	A	0.9111038	A	1.21842318516959	0	lncRNA	49224-1_{1..471}	"gi|310119689|ref|XR_108629.1| PREDICTED: Homo sapiens uncharacterized LOC100129461 (LOC100129461), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119689|ref|XR_108629.1| PREDICTED: Homo sapiens uncharacterized LOC100129461 (LOC100129461), misc_RNA"	Chr6	  5030249	  5030719	+	100129461	XR_108629.2	NA	NA	NA	NA	NA	inter
CUST_5439_PI429285431	3.42941	P	3.3678122	P	1.04362094225474	0	lncRNA	5373-1_{1..674}	"transcript_id ""ENST00000567465.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567465.1"" | genecode_v17"	chr16	 16752084	 16752757	+	ENSG00000260126.1	ENST00000567465.1	RP11-14N9.2	RP11-14N9.2-001	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40"	NA	inter
CUST_36937_PI429285431	5.5263615	P	5.610499	P	0.943348338215115	0	lncRNA	38091-1_{1..512}	n345407|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_956|NULL|-1.3063600|-0.1519284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345407|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_956|NULL|-1.3063600|-0.1519284	chr22	 42689462	 42689973	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21151_PI429285431	4.2305474	P	4.354252	P	0.917827793524123	0	lncRNA	22774-1_{1..593}	lnc-ATMIN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATMIN-2:1	chr16	 81089601	 81090193	+	lnc-ATMIN-2	lnc-ATMIN-2:1	ENSG00000261141.1	RP11-303E16.5	C16orf46	NA	chr16:81087102-81100031	inner
CUST_49784_PI429285431	5.510892	P	5.931088	P	0.747323088461675	0	lncRNA	53542-2_{3001..5069}	hg19_lincRNAsTranscripts_TCONS_l2_00026598 range=chr7:57283852-57290593 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026598 range=chr7:57283852-57290593 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 57286852	 57288920	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27388_PI429285431	0.9133218	A	2.4491212	A	0.344888182212139	0	lncRNA	28950-1_{1..399}	n324550|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194569|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194569|-1.1941600|-0.2008878	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324550|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194569|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194569|-1.1941600|-0.2008878	chr6	 29605231	 29605629	+	NA	NA	NA	NA	MOG	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-34.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-62.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-62.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40chr6:29603231-29617913"	NA	inter
LNCA_21_P0008766	1.4231392	A	0.9209783	A	1.41633338936048	0	lncRNA	AK055989	NA	AK055989	NA	Hs.540206	XLOC_011549	NA	NA	THC2526889	NA	"BROAD Institute lincRNA (XLOC_011549), lincRNA [TCONS_00023757]"	chr15:82109628-82109569	hs|15q25.2	Agilent_HUMAN_G3V2	AK055989	AK055989	chr15	 82109569	 82109628	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22754_PI429285431	0.9018219	A	0.9011213	A	1.00048573684665	0	lncRNA	24337-1_{1..756}	lnc-KLHDC4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHDC4-2:1	chr16	 87839989	 87840744	-	lnc-KLHDC4-2	lnc-KLHDC4-2:1	ENSG00000260177.1	RP4-536B24.3	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.86;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90"	NA	inter
CUST_29941_PI429285431	0.8979898	A	0.9028406	A	0.996643327918911	0	lncRNA	31705-1_{1..299}	n334130|M63073|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196056|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196056|1.1315800|-0.2789244	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334130|M63073|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196056|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196056|1.1315800|-0.2789244	chrX	 32382798	 32383096	-	NA	NA	NA	NA	DMD	NA	chrX:32372798-33239429	inner
CUST_39592_PI429285431	4.1959453	P	4.1654696	P	1.0213488396609	0	lncRNA	40535-1_{1..2265}	n387595|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jev.1||-0.7511900|-0.2361867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387595|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jev.1||-0.7511900|-0.2361867	chr6	  1423400	  1425664	-	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80"	NA	inter
CUST_16798_PI429285431	0.905929	A	0.918289	A	0.991469295575097	0	lncRNA	18506-1_{1..688}	lnc-FAIM2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAIM2-2:1	chr12	 50323535	 50324222	-	lnc-FAIM2-2	lnc-FAIM2-2:1	XLOC_010073	linc-FAIM2-3	NA	NA	NA	inter
CUST_12289_PI429285431	0.9167219	A	1.1373258	A	0.85820612338113	0	lncRNA	13900-1_{1..1224}	lnc-LRRN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRN3-1:1	chr7	110242131	110243354	+	lnc-LRRN3-1	lnc-LRRN3-1:1	XLOC_006207	linc-LRRN3-1	NA	NA	NA	inter
CUST_3853_PI429285431	1.4475754	A	1.4501339	A	0.998228154513418	0	lncRNA	3822-1_{1..1353}	"transcript_id ""ENST00000600308.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600308.1"" | genecode_v17"	chr11	  6223131	  6224483	-	ENSG00000267940.1	ENST00000600308.1	RP11-290F24.6	RP11-290F24.6-001	FAM160A2	NA	chr11:6232564-6234483	inter
CUST_3101_PI429285431	2.3883939	A	2.842792	P	0.729814591119723	0	lncRNA	3081-1_{1..672}	"transcript_id ""ENST00000521188.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521188.1"" | genecode_v17"	chr8	 52874018	 52874689	+	ENSG00000253844.1	ENST00000521188.1	RP11-546K22.1	RP11-546K22.1-001	NA	NA	NA	inter
LNCA_21_P0003654	2.5437453	A	3.05284	P	0.702663225046072	0	lncRNA	TCONS_00008260	NA	NA	NA	NA	XLOC_003703	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003703), lincRNA [TCONS_00008260]"	chr4:138589147-138589206	hs|4q28.3	Agilent_HUMAN_G3V2	TCONS_00008260	TCONS_00008260	chr4	138589147	138589206	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005744	0.9015721	A	0.90657306	A	0.996539599708978	0	lncRNA	TCONS_00014811	NA	NA	NA	NA	XLOC_006887	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006887), lincRNA [TCONS_00014811]"	chr8:102165682-102165741	hs|8q22.3	Agilent_HUMAN_G3V2	TCONS_00014811	TCONS_00014811	chr8	102165682	102165741	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28142_PI429285431	6.5234036	P	6.7107506	P	0.878219211729282	0	lncRNA	29768-1_{1..409}	n325419|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323665|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323665|-0.8990670|-0.2109433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325419|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323665|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323665|-0.8990670|-0.2109433	chr2	 15621744	 15622152	+	NA	NA	NA	NA	DDX1	NA	chr2:15611744-15641443	inter
CUST_9012_PI429285431	1.3036153	A	1.4313811	A	0.915247732873465	0	lncRNA	10539-1_{1..501}	lnc-RASA1-7:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASA1-7:7	chr5	 88761733	 88762233	+	lnc-RASA1-7	lnc-RASA1-7:7	ENSG00000248309	CTC-454M9.1	NA	NA	NA	inter
CUST_2869_PI429285431	1.1473405	A	0.92650926	A	1.16540486632283	0	lncRNA	2850-1_{1..702}	"transcript_id ""ENST00000435148.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435148.1"" | genecode_v17"	chr7	 68689683	 68690384	-	ENSG00000225718.1	ENST00000435148.1	RP11-3P22.2	RP11-3P22.2-001	NA	NA	NA	inter
CUST_47564_PI429285431	7.0393186	P	7.370627	P	0.794815327824984	0	lncRNA	51570-1_{1..2502}	"gi|290641404|ref|NR_033348.1| Homo sapiens retinoic acid induced 2 (RAI2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|290641404|ref|NR_033348.1| Homo sapiens retinoic acid induced 2 (RAI2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NR_033348.1	NA	NA	NA	NA	NA	Unknown
CUST_24340_PI429285431	6.299351	P	7.4359417	P	0.454833146099501	0	lncRNA	25893-1_{1..1130}	lnc-ALKBH6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALKBH6-1:1	chr19	 36505077	 36506206	-	lnc-ALKBH6-1	lnc-ALKBH6-1:1	ENSG00000248101.2	AC002116.5	CLIP3	NA	chr19:36505562-36515137	inner
LNCA_21_P0006811	0.8950917	A	1.5887163	A	0.618298495406246	0	lncRNA	TCONS_00018084	NA	NA	NA	NA	XLOC_008342	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008342), lincRNA [TCONS_00018084]"	chr10:2612547-2612606	hs|10p15.3	Agilent_HUMAN_G3V2	TCONS_00018084	TCONS_00018084	chr10	  2612547	  2612606	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21425_PI429285431	2.458407	A	1.7567548	A	1.62636627016641	0	lncRNA	23045-1_{1..3000}	lnc-TTLL11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TTLL11-1:1	chr9	124577953	124580952	-	lnc-TTLL11-1	lnc-TTLL11-1:1	ENSG00000261534.1	RP11-244O19.1	TTLL11	NA	chr9:124584204-124591731	inter
CUST_22468_PI429285431	2.09591	A	1.5978175	A	1.41234495555229	0	lncRNA	24055-1_{1..993}	lnc-CAST-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CAST-2:1	chr5	 96121432	 96122424	+	lnc-CAST-2	lnc-CAST-2:1	ENSG00000248734.1	CTD-2260A17.1	ERAP1	"hg19_refFlat_ERAP1:range=chr5:96098904-961396295'pad=0,hg19_refFlat_ERAP1:range=chr5:96098904-961396295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ERAP1:range=chr5:96112100-961396295'pad=0,hg19_refFlat_ERAP1:range=chr5:96112100-961396295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr5:96111432-96131703"	NA	inner
CUST_9642_PI429285431	1.3472037	A	2.165322	A	0.567181232090589	0	lncRNA	11160-1_{1..581}	lnc-CTNNA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTNNA3-1:1	chr10	 66683995	 66684575	-	lnc-CTNNA3-1	lnc-CTNNA3-1:1	XLOC_008839	linc-JMJD1C-1	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90"	NA	inter
CUST_18636_PI429285431	4.284568	P	2.6649148	A	3.07301157268334	0	lncRNA	20340-2_{3001..4862}	lnc-TRIM26-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRIM26-2:1	chr6	 30297131	 30298992	-	lnc-TRIM26-2	lnc-TRIM26-2:1	ENSG00000231074	HCG18	TRIM39-RPP21	NA	chr6:30297088-30304927	inter
LNCA_21_P0014738	6.715937	P	6.6005177	P	1.0832898434686	0	lncRNA	XR_113292	XR_113292	XR_113292	NA	Hs.661254	LOC100509256	uncharacterized LOC100509256	NA	THC2517050	NA	"PREDICTED: Homo sapiens hypothetical LOC100509256 (LOC100509256), miscRNA [XR_113292]"	chr7:75025417-75025476	hs|7q11.23	Agilent_HUMAN_G3V2	XR_113292	XR_113292	chr7	 75025417	 75025476	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23570_PI429285431	0.91312236	A	0.91117626	A	1.00134984394842	0	lncRNA	25138-1_{1..392}	lnc-TFDP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TFDP2-3:1	chr3	140842918	140843309	-	lnc-TFDP2-3	lnc-TFDP2-3:1	ENSG00000251270.1	RP11-231L11.1	SPSB4	NA	chr3:140832918-140853024	inner
CUST_25228_PI429285431	11.385475	P	10.919278	P	1.38146307404039	0	lncRNA	26759-1_{1..344}	lnc-TGIF1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TGIF1-2:2	chr18	  3597174	  3597517	+	lnc-TGIF1-2	lnc-TGIF1-2:2	ENSG00000177337.3	RP11-874J12.2	DLGAP1	NA	chr18:3587174-3607370	inner
CUST_32495_PI429285431	7.6025367	P	7.380656	P	1.16625292547911	0	lncRNA	34162-2_{3001..4366}	n339099|BX647541|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1529|NULL|-0.4788370|-0.1837879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339099|BX647541|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1529|NULL|-0.4788370|-0.1837879	chr16	 17199180	 17200545	-	NA	NA	NA	NA	XYLT1	NA	chr16:17188210-17210389	inner
CUST_50853_PI429285431	1.5010468	A	1.7764251	A	0.826233636763189	0	lncRNA	54497-1_{1..471}	hg19_lincRNAsTranscripts_TCONS_l2_00004709 range=chr11:88156474-88157727 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004709 range=chr11:88156474-88157727 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 88156474	 88156944	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5398_PI429285431	8.002625	P	8.120808	P	0.921347309626135	0	lncRNA	5332-1_{1..580}	"transcript_id ""ENST00000561544.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561544.1"" | genecode_v17"	chr16	  2261998	  2262577	+	ENSG00000261532.1	ENST00000561544.1	RP11-304L19.8	RP11-304L19.8-001	C16orf79	NA	chr16:2259254-2261069	inner
CUST_45342_PI429285431	0.90063226	A	0.91074914	A	0.99301204326531	0	lncRNA	49780-1_{1..1790}	"gi|223468683|ref|NR_026803.1| Homo sapiens family with sequence similarity 74, member A1 (FAM74A1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">gi|223468683|ref|NR_026803.1| Homo sapiens family with sequence similarity 74, member A1 (FAM74A1), non-coding RNA"	Chr9	 39900200	 39901989	+	401507	NR_026803.1	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10"	NA	inter
CUST_4641_PI429285431	0.91448164	A	1.7519289	A	0.559632921707075	0	lncRNA	4587-1_{1..817}	"transcript_id ""ENST00000433664.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433664.1"" | genecode_v17"	chr13	 69796478	 69797294	+	ENSG00000237534.1	ENST00000433664.1	RP11-501G6.1	RP11-501G6.1-001	NA	NA	NA	inter
CUST_35590_PI429285431	5.3978906	P	5.279351	P	1.08563534769646	0	lncRNA	37005-1_{1..591}	n342726|BC039479|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5229|NULL|1.3720300|-0.1348333	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342726|BC039479|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5229|NULL|1.3720300|-0.1348333	chr17	 76000248	 76000838	+	NA	NA	NA	NA	TNRC6C	NA	chr17:76000318-76037924	inner
LNCA_21_P0005814	2.423807	A	0.88796496	A	2.8995761751484	0	lncRNA	TCONS_00014964	NA	NA	NA	NA	XLOC_007047	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007047), lincRNA [TCONS_00014964]"	chr8:30593779-30593720	hs|8p12	Agilent_HUMAN_G3V2	TCONS_00014964	TCONS_00014964	chr8	 30593720	 30593779	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48789_PI429285431	2.2935026	A	2.5046036	A	0.863877707049156	0	lncRNA	52627-1_{1..223}	hg19_lincRNAsTranscripts_TCONS_l2_00014249 range=chr2:220361189-220361705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014249 range=chr2:220361189-220361705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	220361189	220361411	+	NA	NA	NA	NA	SPEG	NA	chr2:220351189-220358354	inter
CUST_49981_PI429285431	0.88023806	A	1.0460887	A	0.891402776679329	0	lncRNA	53722-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026272 range=chr7:149739412-149745413 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026272 range=chr7:149739412-149745413 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	149739412	149742411	+	NA	NA	NA	NA	NA	"hg19_refFlat_DPP6:range=chr7:153749906-1546841905'pad=0,hg19_refFlat_DPP6:range=chr7:153749906-1546841905'pad=0 3'pad=0 strand=+ repeatMasking=none,-114.10"	NA	inter
CUST_17618_PI429285431	2.597549	A	2.925166	P	0.796851612684979	0	lncRNA	19342-1_{1..1703}	lnc-VRK1-5:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VRK1-5:8	chr14	 97933776	 97935478	+	lnc-VRK1-5	lnc-VRK1-5:8	XLOC_010922	linc-C14orf177-3	NA	NA	NA	inter
CUST_49514_PI429285431	4.1377277	P	4.4124446	P	0.82661250838549	0	lncRNA	53306-1_{1..689}	hg19_lincRNAsTranscripts_TCONS_l2_00024683 range=chr6:28287011-28288162 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024683 range=chr6:28287011-28288162 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 28287011	 28287699	-	NA	NA	NA	NA	ZNF323	NA	chr6:28292514-28298162	inter
CUST_27606_PI429285431	1.0712551	A	0.89314485	A	1.13140092060857	0	lncRNA	29185-1_{1..2261}	n324809|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000193777|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000193777|-1.2651000|-0.2481642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324809|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000193777|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000193777|-1.2651000|-0.2481642	chr21	 34243099	 34245359	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35766_PI429285431	4.330613	P	4.4816976	P	0.900573168462437	0	lncRNA	37185-1_{1..2758}	n344455|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_3|NULL|-1.2710400|-0.1663142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344455|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_3|NULL|-1.2710400|-0.1663142	chr12	116956062	116958819	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
CUST_23242_PI429285431	1.3308059	A	0.9828924	A	1.27271862430356	0	lncRNA	24814-1_{1..1640}	lnc-PCP4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-PCP4-1:2	chr21	 41756506	 41758145	+	lnc-PCP4-1	lnc-PCP4-1:2	ENSG00000235123.1	DSCAM-AS1	DSCAM	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20chr21:41746506-41767285"	NA	inter
CUST_35053_PI429285431	0.9172204	A	0.89712536	A	1.01402627830285	0	lncRNA	36463-1_{1..1462}	n342000|CR612362|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4481|NULL|-0.0457988|-0.3983787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342000|CR612362|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4481|NULL|-0.0457988|-0.3983787	chr6	 76006234	 76007695	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30"	NA	inter
CUST_44027_PI429285431	0.9232955	A	0.928005	A	0.99674094563771	0	lncRNA	48711-1_{1..3000}	"gi|237757264|ref|NR_027689.1| Homo sapiens ceramide kinase-like (CERKL), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237757264|ref|NR_027689.1| Homo sapiens ceramide kinase-like (CERKL), transcript variant 5, non-coding RNA"	Chr2	182401399	182404398	-	375298	NR_027689.1	NA	NA	NA	NA	NA	inter
CUST_23490_PI429285431	0.90428066	A	0.90753585	A	0.997746217818889	0	lncRNA	25057-1_{1..521}	lnc-TLR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TLR2-1:1	chr4	154648740	154649260	+	lnc-TLR2-1	lnc-TLR2-1:1	ENSG00000249309.1	RP11-153M7.5	RNF175	NA	chr4:154638740-154658874	inner
CUST_14372_PI429285431	0.89099824	A	1.0083827	A	0.921857421821351	0	lncRNA	16032-1_{1..492}	lnc-CA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CA2-2:1	chr8	 86436090	 86436581	+	lnc-CA2-2	lnc-CA2-2:1	XLOC_006864	linc-ATP6V0D2-2	NA	NA	NA	inter
CUST_51926_PI429285431	1.4945458	A	0.8875302	A	1.52310520909709	0	lncRNA	55466-1_{1..702}	hg19_lincRNAsTranscripts_TCONS_l2_00016424 range=chr20:1448863-1454463 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016424 range=chr20:1448863-1454463 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	  1448863	  1449564	-	NA	NA	NA	NA	NSFL1C	NA	chr20:1438863-1448337	inter
CUST_4598_PI429285431	3.0635905	A	3.6434166	P	0.669044418006042	0	lncRNA	4547-1_{1..444}	"transcript_id ""ENST00000400432.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000400432.3"" | genecode_v17"	chr13	 40918094	 40918537	-	ENSG00000230058.1	ENST00000400432.3	RP11-172E9.2	RP11-172E9.2-001	NA	NA	NA	inter
CUST_51389_PI429285431	4.2336144	P	4.835247	P	0.659007778919264	0	lncRNA	54976-2_{3001..3368}	hg19_lincRNAsTranscripts_TCONS_l2_00008900 range=chr15:101413885-101418827 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008900 range=chr15:101413885-101418827 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	101416885	101417252	+	NA	NA	NA	NA	ALDH1A3	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20chr15:101420009-101428827"	NA	inter
CUST_39022_PI429285431	13.970278	P	13.750521	P	1.16453742136165	0	lncRNA	40002-1_{1..843}	n385361|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wwa.2||4.1988000|-0.3651900	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385361|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wwa.2||4.1988000|-0.3651900	chr8	 12427801	 12428643	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42769_PI429285431	9.583708	P	9.904441	P	0.800662975880299	0	lncRNA	45752-1_{1..92}	ENST00000383882 ncrna:snoRNA chromosome:GRCh37:15:25321076:25321167:1 gene:ENSG00000206609 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000383882 ncrna:snoRNA chromosome:GRCh37:15:25321076:25321167:1 gene:ENSG00000206609 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 25321076	 25321167	+	ENSG00000206609	ENST00000383882	NA	NA	SNRPN	NA	chr15:25311076-25331167	inter
CUST_387_PI429201921	4.2770033	P	5.0227737	P	0.596349335578446	0	lncRNA	246-1_{1..3000}	TC03003065.hg.1	 TCONS_l2_00019491-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125626357-125633319 // chr3 // 100 // 100 // 0 // --- // 0///TCONS_l2_00019490-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125623901-125627019 // chr3 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00019493-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125627284-125627714 // chr3 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00020180-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125626847-125629115 // chr3 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00019492-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125626797-125627926 // chr3 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr3:-:125623901-125627019	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00019490-XLOC_l2_010330	linc-OSBPL11-4	chr3	125623901	125627019	-	NA	NA	NA	NA	NFIA	NA	chr1:61704617-61729182	Unknown
CUST_21611_PI429285431	2.0332966	A	2.7722607	A	0.599169420206339	0	lncRNA	23224-1_{1..859}	lnc-HIBADH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HIBADH-1:1	chr7	 27779635	 27780493	-	lnc-HIBADH-1	lnc-HIBADH-1:1	ENSG00000229893.1	AC004549.6	TAX1BP1	NA	chr7:27778992-27790014	inner
CUST_35003_PI429285431	6.6775613	P	6.280492	P	1.31683017460867	0	lncRNA	36417-1_{1..2010}	n341933|AK094275|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4414|NULL|1.0988800|-0.1023183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341933|AK094275|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4414|NULL|1.0988800|-0.1023183	chr12	 57628693	 57630702	-	NA	NA	NA	NA	STAC3	NA	chr12:57637242-57644527	inner
CUST_37295_PI429285431	7.766932	P	7.411749	P	1.27914782568792	0	lncRNA	38403-2_{3001..4820}	n345737|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1286|NULL|-1.3934300|-0.1321395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345737|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1286|NULL|-1.3934300|-0.1321395	chr7	150105419	150107238	+	NA	NA	NA	NA	ZNF775	NA	chr7:150092419-150095719	inter
CUST_28005_PI429285431	0.9058027	A	0.91054547	A	0.996717960053124	0	lncRNA	29615-1_{1..725}	n325260|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326402|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326402|-0.8982580|-0.3188017	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325260|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326402|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326402|-0.8982580|-0.3188017	chr2	 67876689	 67877413	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5903_PI429285431	0.90403485	A	1.1046673	A	0.870169014164834	0	lncRNA	5834-2_{3001..4810}	"transcript_id ""ENST00000565472.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565472.1"" | genecode_v17"	chr17	 53249184	 53250993	+	ENSG00000261589.1	ENST00000565472.1	CTC-462L7.1	CTC-462L7.1-001	STXBP4	NA	chr17:53236184-53241449	inter
CUST_42691_PI429285431	0.9006519	A	0.90754104	A	0.995236195116583	0	lncRNA	45615-1_{1..101}	ENST00000516616 ncrna:snoRNA chromosome:GRCh37:15:34889659:34889759:-1 gene:ENSG00000252425 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516616 ncrna:snoRNA chromosome:GRCh37:15:34889659:34889759:-1 gene:ENSG00000252425 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 34889659	 34889759	-	ENSG00000252425	ENST00000516616	NA	NA	NA	NA	NA	inter
CUST_50556_PI429285431	0.8850248	A	0.88918185	A	0.997122699898416	0	lncRNA	54248-1_{1..288}	hg19_lincRNAsTranscripts_TCONS_l2_00030928 range=chrY:9868023-9871730 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030928 range=chrY:9868023-9871730 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrY	  9868023	  9868310	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38738_PI429285431	0.9024957	A	1.1638609	A	0.834298062421946	0	lncRNA	39730-2_{3001..3642}	n384248|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003cpd.1||-0.5315110|-0.2295818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384248|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003cpd.1||-0.5315110|-0.2295818	chr3	 46061515	 46062156	-	NA	NA	NA	NA	XCR1	NA	chr3:46062291-46068979	inter
CUST_876_PI429285431	0.8902571	A	0.8863809	A	1.00269038972159	0	lncRNA	866-1_{1..1353}	"transcript_id ""ENST00000587616.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587616.1"" | genecode_v17"	chr2	 48172395	 48173747	-	ENSG00000230773.2	ENST00000587616.1	AC079807.4	AC079807.4-002	NA	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-28.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10"	NA	inter
CUST_22985_PI429285431	3.065748	P	3.278862	P	0.86267317446877	0	lncRNA	24559-1_{1..759}	lnc-PTRH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTRH1-1:1	chr9	130477714	130478472	-	lnc-PTRH1-1	lnc-PTRH1-1:1	ENSG00000248666.1	RP11-56D16.2	TTC16	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50chr9:130478358-130487926"	NA	inner
CUST_38743_PI429285431	8.495365	P	8.828748	P	0.793673202274101	0	lncRNA	39735-1_{1..1289}	n384276|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003dpv.2||-1.0032100|-0.1879524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384276|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003dpv.2||-1.0032100|-0.1879524	chr3	 75721423	 75722711	+	NA	NA	NA	NA	FRG2C	NA	chr3:75711423-75716368	inter
CUST_14842_PI429285431	5.9519305	P	6.2314672	P	0.823855543714088	0	lncRNA	16504-1_{1..228}	lnc-ADAMTS9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAMTS9-1:1	chr3	 64475053	 64475280	-	lnc-ADAMTS9-1	lnc-ADAMTS9-1:1	XLOC_003147	linc-PRICKLE2-2	NA	NA	NA	inter
CUST_5878_PI429285431	6.2945185	P	6.293465	P	1.00073049723796	0	lncRNA	5808-1_{1..494}	"transcript_id ""ENST00000575126.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000575126.1"" | genecode_v17"	chr17	 44987108	 44987601	-	ENSG00000262031.1	ENST00000575126.1	RP11-63A1.2	RP11-63A1.2-001	GOSR2	NA	chr17:44998490-44998878	inter
CUST_23866_PI429285431	6.4561596	P	6.2683167	P	1.13905933439966	0	lncRNA	25428-1_{1..3000}	lnc-SETD6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SETD6-2:1	chr16	 60081759	 60084758	+	lnc-SETD6-2	lnc-SETD6-2:1	ENSG00000261807.1	RP11-430C1.1	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70"	NA	inter
CUST_18092_PI429285431	2.0310187	A	1.8703527	A	1.11780303713199	0	lncRNA	19827-1_{1..726}	lnc-C15orf2-9:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-9:9	chr15	 24523358	 24524083	+	lnc-C15orf2-9	lnc-C15orf2-9:9	XLOC_011174	linc-C15orf2-8	NA	NA	NA	inter
CUST_567_PI429285431	4.362073	P	4.9109435	P	0.683555080871057	0	lncRNA	559-1_{1..347}	"transcript_id ""ENST00000456240.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456240.1"" | genecode_v17"	chr1	213904759	213905105	+	ENSG00000228255.1	ENST00000456240.1	RP11-323I1.1	RP11-323I1.1-001	NA	NA	NA	inter
CUST_34604_PI429285431	3.6338086	P	3.2456954	P	1.30868075209447	0	lncRNA	36059-1_{1..923}	n341485|BC015455|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3955|NULL|-1.1393600|-0.2404878	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341485|BC015455|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3955|NULL|-1.1393600|-0.2404878	chr8	 37920398	 37921320	+	NA	NA	NA	NA	EIF4EBP1	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr8:37910398-37917883"	NA	inter
CUST_9737_PI429285431	4.806725	P	4.814604	P	0.994553579188441	0	lncRNA	11254-1_{1..224}	lnc-GLYCTK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLYCTK-1:1	chr3	 52314304	 52314527	+	lnc-GLYCTK-1	lnc-GLYCTK-1:1	XLOC_002654	linc-GLYCTK	WDR82	NA	chr3:52304304-52312659	inter
LNCA_21_P0014330	3.5384822	P	5.0317774	P	0.355200323317545	0	lncRNA	ENST00000551187	XR_109311	XR_109311	NA	Hs.659799	LOC100505908	NA	ENST00000551187	THC2660203	NA	"PREDICTED: Homo sapiens hypothetical LOC100505908 (LOC100505908), miscRNA [XR_109311]"	chr16:66875395-66875336	hs|16q22.1	Agilent_HUMAN_G3V2	ENST00000551187	ENST00000551187	chr16	 66875336	 66875395	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31040_PI429285431	3.799066	P	3.694117	P	1.07545637185824	0	lncRNA	32829-1_{1..295}	n337257|BC127761|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389388|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389388|-1.0240800|-0.0173910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337257|BC127761|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389388|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389388|-1.0240800|-0.0173910	chr12	125262745	125263039	+	NA	NA	NA	NA	SCARB1	NA	chr12:125262174-125273040	inner
CUST_20561_PI429285431	2.502829	A	3.0198176	A	0.698829007965181	0	lncRNA	22202-1_{1..541}	lnc-DTHD1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-DTHD1-5:1	chr4	 33893758	 33894298	+	lnc-DTHD1-5	lnc-DTHD1-5:1	ENSG00000250723.1	RP11-79E3.2	NA	NA	NA	inter
CUST_42466_PI429285431	8.007944	P	8.025215	P	0.988100026506543	0	lncRNA	45213-1_{1..135}	ENST00000384210 ncrna:snoRNA chromosome:GRCh37:2:61644379:61644513:-1 gene:ENSG00000206937 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384210 ncrna:snoRNA chromosome:GRCh37:2:61644379:61644513:-1 gene:ENSG00000206937 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 61644379	 61644513	-	ENSG00000206937	ENST00000384210	NA	NA	USP34	NA	chr2:61634379-61654513	inner
CUST_40036_PI429285431	6.1373677	P	4.674044	P	2.75742892568073	0	lncRNA	40892-1_{1..3000}	n407230|NR_026698|lncRNA|Homosapiens||RefGeneNoncode|NR_026698||8.1665200|-0.3248800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407230|NR_026698|lncRNA|Homosapiens||RefGeneNoncode|NR_026698||8.1665200|-0.3248800	chr3	122140747	122143746	-	NA	NA	NA	NA	KPNA1	NA	chr3:122140748-122233786	inter
CUST_14541_PI429285431	3.0476809	P	3.4551075	P	0.753967059891439	0	lncRNA	16209-1_{1..554}	lnc-C4orf38-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C4orf38-2:1	chr4	183998830	183999383	-	lnc-C4orf38-2	lnc-C4orf38-2:1	XLOC_004196	linc-DCTD	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.30;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40"	NA	inter
CUST_34221_PI429285431	0.9203069	A	0.9514594	A	0.978638198032886	0	lncRNA	35734-1_{1..3000}	n341083|AF525782|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3549|NULL|-0.8545410|-0.3661285	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341083|AF525782|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3549|NULL|-0.8545410|-0.3661285	chr11	 84594423	 84597422	+	NA	NA	NA	NA	DLG2	NA	chr11:84584423-84614599	inner
CUST_552_PI429285431	1.3885922	A	1.2929559	A	1.06853658171433	0	lncRNA	544-1_{1..595}	"transcript_id ""ENST00000453569.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000453569.1"" | genecode_v17"	chr1	209145799	209146393	+	ENSG00000236950.1	ENST00000453569.1	RP5-1051D14.1	RP5-1051D14.1-001	NA	NA	NA	inter
LNCA_21_P0011998	1.0637269	A	0.9248116	A	1.1010769524501	0	lncRNA	TCONS_l2_00015234	NA	NA	NA	NA	XLOC_l2_007186	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007186), lincRNA [TCONS_l2_00015234]"	chr2:8232449-8232508	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_l2_00015234	TCONS_l2_00015234	chr2	  8232449	  8232508	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013183	0.9111488	A	0.92229	A	0.992307250458832	0	lncRNA	TCONS_l2_00025706	NA	NA	NA	NA	XLOC_l2_013302	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013302), lincRNA [TCONS_l2_00025706]"	chr7:20354008-20354067	hs|7p21.1	Agilent_HUMAN_G3V2	TCONS_l2_00025706	TCONS_l2_00025706	chr7	 20354008	 20354067	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1211_PI429285431	8.813332	P	8.7567215	P	1.04001944330603	0	lncRNA	1202-1_{1..1269}	"transcript_id ""ENST00000448256.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448256.1"" | genecode_v17"	chr2	201966105	201967373	+	ENSG00000232719.1	ENST00000448256.1	RP11-13J8.1	RP11-13J8.1-001	CFLAR	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RPL17:range=chr18:47014889-470172645'pad=0,hg19_refFlat_RPL17:range=chr18:47014889-470172645'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RPL17-C18orf32:range=chr18:47009962-470172645'pad=0,hg19_refFlat_RPL17-C18orf32:range=chr18:47009962-470172645'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20chr2:201967221-201977859"	NA	inter
LNCA_33_P3350892	5.678733	P	5.952918	P	0.826917324193079	0	lncRNA	XR_132727	XR_132727	XR_132727	   651337	Hs.603195	LOC651337	uncharacterized LOC651337	NA	THC2482301	NA	"PREDICTED: Homo sapiens hypothetical LOC651337 (LOC651337), miscRNA [XR_132727]"	chr9:140679701-140679642	hs|9q34.3	Agilent_HUMAN_G3V2	XR_132727	XR_132727	chr9	140679642	140679701	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11677_PI429285431	10.763958	P	11.630922	P	0.548299476003737	0	lncRNA	13255-1_{1..917}	lnc-SNURF-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SNURF-5:3	chr15	 26121855	 26122771	+	lnc-SNURF-5	lnc-SNURF-5:3	XLOC_011188	linc-GABRA5-3	NA	NA	NA	inter
CUST_47212_PI429285431	6.2174063	P	6.1802387	P	1.02609734164734	0	lncRNA	51287-1_{1..2471}	"gi|338797805|ref|NR_040048.1| Homo sapiens SDCBP2 antisense RNA 1 (SDCBP2-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338797805|ref|NR_040048.1| Homo sapiens SDCBP2 antisense RNA 1 (SDCBP2-AS1), transcript variant 2, non-coding RNA"	Chr20	  1305987	  1308457	+	100507495	NR_040048.1	NA	NA	NA	NA	NA	inter
CUST_40612_PI429285431	0.9157147	A	0.91874254	A	0.99790346205309	0	lncRNA	41358-1_{1..2653}	n410094|NR_036525|lncRNA|Homosapiens||RefGeneNoncode|NR_036525||1.9407100|-0.2271794	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410094|NR_036525|lncRNA|Homosapiens||RefGeneNoncode|NR_036525||1.9407100|-0.2271794	chr3	 45927995	 45930647	+	NA	NA	NA	NA	CCR9	NA	chr3:45924319-45944667	inner
CUST_26866_PI429285431	14.625832	P	14.826958	P	0.869871377830491	0	lncRNA	28381-1_{1..599}	n323939|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054952|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054952|-0.9323970|-0.0891650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323939|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054952|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054952|-0.9323970|-0.0891650	chr9	136659496	136660094	+	NA	NA	NA	NA	VAV2	NA	chr9:136649496-136671073	inner
CUST_40463_PI429285431	8.602708	P	8.974512	P	0.772815534798521	0	lncRNA	41234-1_{1..1152}	n409389|NR_033774|lncRNA|Homosapiens||RefGeneNoncode|NR_033774||1.3737500|-0.1550161	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409389|NR_033774|lncRNA|Homosapiens||RefGeneNoncode|NR_033774||1.3737500|-0.1550161	chr13	 23471168	 23472319	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49869_PI429285431	7.1144333	P	7.2177296	P	0.930903611668532	0	lncRNA	53621-1_{1..2335}	hg19_lincRNAsTranscripts_TCONS_l2_00026034 range=chr7:76589131-76643571 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026034 range=chr7:76589131-76643571 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 76589131	 76591465	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20060_PI429285431	7.480444	P	7.7002654	P	0.858671730057976	0	lncRNA	21711-1_{1..828}	lnc-MRPL11-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPL11-1:2	chr11	 66247510	 66248337	-	lnc-MRPL11-1	lnc-MRPL11-1:2	ENSG00000255517.1	CTD-3074O7.5	PELI3	"hg19_refFlat_PELI3:range=chr11:66235600-662436385'pad=0,hg19_refFlat_PELI3:range=chr11:66235600-662436385'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_PELI3:range=chr11:66238810-662436385'pad=0,hg19_refFlat_PELI3:range=chr11:66238810-662436385'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.50chr11:66237510-66244808"	NA	inner
CUST_52034_PI429285431	0.8985681	A	1.3383756	A	0.737232971692054	0	lncRNA	55564-3_{6001..8135}	hg19_lincRNAsTranscripts_TCONS_l2_00017169 range=chr21:23406325-23435032 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017169 range=chr21:23406325-23435032 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 23412325	 23414459	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20034_PI429285431	0.909855	A	0.9012145	A	1.00600710896042	0	lncRNA	21686-1_{1..3000}	lnc-ALK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALK-1:1	chr2	 30363506	 30366505	-	lnc-ALK-1	lnc-ALK-1:1	ENSG00000233862.1	AC016907.3	YPEL5	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30chr2:30369750-30376670"	NA	inter
CUST_5917_PI429285431	3.5961733	P	3.486682	P	1.07884776342499	0	lncRNA	5846-1_{1..3000}	"transcript_id ""ENST00000579991.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579991.1"" | genecode_v17"	chr17	 56168909	 56171908	+	ENSG00000264364.1	ENST00000579991.1	RP11-159D12.9	RP11-159D12.9-001	DYNLL2	NA	chr17:56160780-56167618	inter
CUST_36231_PI429285431	2.2464335	A	3.0746143	P	0.563239024142005	0	lncRNA	37481-1_{1..3000}	n344772|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_321|NULL|-1.4877100|-0.3217440	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344772|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_321|NULL|-1.4877100|-0.3217440	chr9	 22012153	 22015152	+	NA	NA	NA	NA	CDKN2B	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80chr9:22002902-22009312"	NA	inter
CUST_22808_PI429285431	2.2324789	A	1.9815404	A	1.18998096806034	0	lncRNA	24388-1_{1..635}	lnc-RP3-486B10.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP3-486B10.1.1-1:2	chr6	 16762583	 16763217	+	lnc-RP3-486B10.1.1-1	lnc-RP3-486B10.1.1-1:2	ENSG00000229931.1	RP1-151F17.1	ATXN1	NA	chr6:16752583-16761721	inter
CUST_4690_PI429285431	0.9061959	A	0.9198183	A	0.990602110649438	0	lncRNA	4637-1_{1..698}	"transcript_id ""ENST00000455487.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455487.1"" | genecode_v17"	chr13	109934321	109935018	+	ENSG00000223617.1	ENST00000455487.1	RP11-54H7.2	RP11-54H7.2-001	NA	NA	NA	inter
CUST_52207_PI429285431	2.9243512	A	3.9988155	P	0.474847347559821	0	lncRNA	55724-1_{1..258}	hg19_lincRNAsTranscripts_TCONS_l2_00018409 range=chr22:42548208-42550874 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018409 range=chr22:42548208-42550874 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 42548208	 42548465	-	NA	NA	NA	NA	TCF20	NA	chr22:42556019-42560874	inter
CUST_43922_PI429285431	8.820611	P	9.101145	P	0.823286229209579	0	lncRNA	48635-1_{1..841}	"gi|375268694|ref|NR_003506.3| Homo sapiens plasminogen-like A (PLGLA), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|375268694|ref|NR_003506.3| Homo sapiens plasminogen-like A (PLGLA), non-coding RNA"	Chr2	106998570	106999410	+	285189	NR_003506.3	NA	NA	NA	NA	NA	inter
CUST_25148_PI429285431	5.8527484	P	6.2230506	P	0.773620430239607	0	lncRNA	26686-1_{1..517}	lnc-GPX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-GPX1-1:1	chr3	 49404003	 49404519	-	lnc-GPX1-1	lnc-GPX1-1:1	ENSG00000235908.1	RHOA-IT1	RHOA	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90chr3:49396578-49414439"	NA	inner
CUST_43356_PI429285431	7.91274	P	8.084106	P	0.888001488507812	0	lncRNA	48174-1_{1..1640}	"gi|336455031|ref|NR_038869.1| Homo sapiens uncharacterized LOC254099 (LOC254099), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|336455031|ref|NR_038869.1| Homo sapiens uncharacterized LOC254099 (LOC254099), non-coding RNA"	Chr1	  1072397	  1074036	+	254099	NR_038869.1	NA	NA	NA	NA	NA	inter
CUST_33359_PI429285431	1.2053986	A	0.8906803	A	1.2437687718427	0	lncRNA	34939-1_{1..1086}	n340077|BC039430|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2532|NULL|-0.0786145|-0.3527570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340077|BC039430|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2532|NULL|-0.0786145|-0.3527570	chr4	 68608242	 68609327	+	NA	NA	NA	NA	GNRHR	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chr4:68598242-68619312"	NA	inner
LNCA_21_P0000931	0.8911322	A	0.8917344	A	0.99958267387265	0	lncRNA	ENST00000423403	NA	AK097193	NA	Hs.650459	XLOC_000856	NA	ENST00000423403	THC2624425	NA	"BROAD Institute lincRNA (XLOC_000856), lincRNA [TCONS_00000081]"	chr1:61125414-61125355	hs|1p32.1	Agilent_HUMAN_G3V2	ENST00000423403	ENST00000423403	chr1	 61125355	 61125414	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8033_PI429285431	0.8913465	A	1.2412195	A	0.784653167633232	0	lncRNA	9641-1_{1..701}	lnc-ENDOD1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ENDOD1-1:2	chr11	 94937970	 94938670	+	lnc-ENDOD1-1	lnc-ENDOD1-1:2	ENSG00000245552	RP11-712B9.2	SESN3	NA	chr11:94927970-94948044	inner
LNCA_21_P0014427	5.1449327	P	3.8819475	P	2.39991814487201	0	lncRNA	ENST00000441316	XR_109720	XR_109720	NA	Hs.627409	LOC100506544	NA	ENST00000441316	THC2507384	NA	"PREDICTED: Homo sapiens hypothetical LOC100506544 (LOC100506544), miscRNA [XR_109720]"	chr22:41605490-41605431	hs|22q13.2	Agilent_HUMAN_G3V2	ENST00000441316	ENST00000441316	chr22	 41605431	 41605490	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012790	3.9136493	P	4.2457237	P	0.794393432051114	0	lncRNA	ENST00000504050	NA	NA	NA	NA	XLOC_l2_011255	NA	ENST00000504050	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011255), lincRNA [TCONS_l2_00021965]"	chr4:128018355-128018296	hs|4q28.1	Agilent_HUMAN_G3V2	ENST00000504050	ENST00000504050	chr4	128018296	128018355	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2040_PI429285431	0.9000604	A	0.88788426	A	1.00847557311374	0	lncRNA	2032-1_{1..560}	"transcript_id ""ENST00000509745.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509745.1"" | genecode_v17"	chr5	  2831135	  2831694	-	ENSG00000248137.1	ENST00000509745.1	RP11-468D11.1	RP11-468D11.1-001	NA	NA	NA	inter
CUST_24674_PI429285431	0.9061273	A	0.9093275	A	0.997784248801611	0	lncRNA	26221-1_{1..191}	lnc-MANSC4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MANSC4-2:1	chr12	 27953614	 27953804	-	lnc-MANSC4-2	lnc-MANSC4-2:1	ENSG00000256512.1	RP11-860B13.3	KLHDC5	NA	chr12:27943614-27955973	inner
CUST_47599_PI429285431	15.128682	P	15.141894	P	0.990883944941746	0	lncRNA	51602-1_{1..566}	"gi|62988277|ref|NR_002309.1| Homo sapiens ribosomal protein S26 pseudogene 11 (RPS26P11), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|62988277|ref|NR_002309.1| Homo sapiens ribosomal protein S26 pseudogene 11 (RPS26P11), non-coding RNA"	ChrX	 71264259	 71264824	+	441502	NR_002309.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002241	6.0958586	P	6.298478	P	0.868971399838366	0	lncRNA	TCONS_00003733	NA	NA	NA	NA	XLOC_001532	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001532), lincRNA [TCONS_00003733]"	chr2:74377806-74377865	hs|2p13.1	Agilent_HUMAN_G3V2	TCONS_00003733	TCONS_00003733	chr2	 74377806	 74377865	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25304_PI429285431	7.457219	P	7.644069	P	0.878521805226884	0	lncRNA	26834-1_{1..465}	lnc-KCNK15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNK15-1:1	chr20	 43383473	 43383937	+	lnc-KCNK15-1	lnc-KCNK15-1:1	ENSG00000234194.1	RP4-781B1.2	RIMS4	NA	chr20:43380445-43393718	inner
CUST_32255_PI429285431	0.89962476	A	0.89128304	A	1.00579878795469	0	lncRNA	33945-2_{3001..4850}	n338829|BC042523|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1252|NULL|-1.2584100|-0.2994016	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338829|BC042523|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1252|NULL|-1.2584100|-0.2994016	chr2	 48343113	 48344962	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35987_PI429285431	1.351581	A	1.8973432	A	0.685029394346256	0	lncRNA	37328-2_{3001..3502}	n344603|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_151|NULL|-1.2922800|-0.2500946	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344603|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_151|NULL|-1.2922800|-0.2500946	chr12	  9489479	  9489980	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
CUST_10626_PI429285431	1.2042049	A	0.90555024	A	1.22999688337554	0	lncRNA	12157-1_{1..593}	lnc-FAM110B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM110B-1:1	chr8	 59131474	 59132066	+	lnc-FAM110B-1	lnc-FAM110B-1:1	XLOC_006810	linc-UBXN2B	NA	NA	NA	inter
CUST_41707_PI429285431	5.2972417	P	5.334921	P	0.974220806259532	0	lncRNA	43210-1_{1..80}	ENST00000517221 ncrna:miRNA chromosome:GRCh37:15:59463382:59463461:-1 gene:ENSG00000253030 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517221 ncrna:miRNA chromosome:GRCh37:15:59463382:59463461:-1 gene:ENSG00000253030 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 59463382	 59463461	-	ENSG00000253030	ENST00000517221	NA	NA	MYO1E	NA	chr15:59453382-59473461	inner
LNCA_21_P0010679	7.732768	P	7.5858502	P	1.10720149800143	0	lncRNA	TCONS_l2_00001843	NA	NA	NA	NA	XLOC_l2_001362	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001362), lincRNA [TCONS_l2_00001843]"	chr1:230020277-230020218	hs|1q42.13	Agilent_HUMAN_G3V2	TCONS_l2_00001843	TCONS_l2_00001843	chr1	230020218	230020277	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36300_PI429285431	0.9074672	A	0.91235495	A	0.996617802427843	0	lncRNA	37532-1_{1..2062}	n344827|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_376|NULL|-1.3899600|-0.3882981	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344827|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_376|NULL|-1.3899600|-0.3882981	chr5	 74337139	 74339200	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22166_PI429285431	1.1126672	A	0.90607864	A	1.15395627555376	0	lncRNA	23768-1_{1..466}	lnc-NAALAD2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NAALAD2-1:4	chr11	 90585784	 90586249	+	lnc-NAALAD2-1	lnc-NAALAD2-1:4	ENSG00000261645.1	RP11-660M18.2	NA	NA	NA	inter
CUST_11348_PI429285431	0.8831843	A	0.8830988	A	1.00005926584009	0	lncRNA	12911-1_{1..585}	lnc-DMRTA1-7:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRTA1-7:5	chr9	 24591877	 24592461	+	lnc-DMRTA1-7	lnc-DMRTA1-7:5	XLOC_007304	linc-IFT74-3	NA	NA	NA	inter
CUST_27575_PI429285431	8.83025	P	8.846323	P	0.988920875971587	0	lncRNA	29153-1_{1..379}	n324776|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206822|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206822|-0.9634460|-0.1031110	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324776|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206822|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206822|-0.9634460|-0.1031110	chr21	 45581049	 45581427	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39770_PI429285431	7.045465	P	6.596801	P	1.36477582805492	0	lncRNA	40687-1_{1..3000}	n405971|NR_003253|lncRNA|Homosapiens||RefGeneNoncode|NR_003253||8.2630100|-0.1428708	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405971|NR_003253|lncRNA|Homosapiens||RefGeneNoncode|NR_003253||8.2630100|-0.1428708	chr22	 20748479	 20751478	+	NA	NA	NA	NA	USP41	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30chr22:20738479-20742433"	NA	inner
CUST_51277_PI429285431	1.8025885	A	0.8882665	A	1.88468314969538	0	lncRNA	54883-1_{1..419}	hg19_lincRNAsTranscripts_TCONS_l2_00008968 range=chr15:30699197-30700246 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008968 range=chr15:30699197-30700246 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 30699197	 30699615	-	NA	NA	NA	NA	LOC100652910	NA	chr15:30689197-30706365	inter
CUST_11547_PI429285431	2.3738873	A	1.9517387	A	1.33992160948507	0	lncRNA	13120-1_{1..360}	lnc-NBPF6-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NBPF6-4:1	chr1	108594933	108595292	+	lnc-NBPF6-4	lnc-NBPF6-4:1	XLOC_000332	linc-NBPF6-2	NA	NA	NA	inter
CUST_40658_PI429285431	0.89849925	A	0.90545595	A	0.995189590268634	0	lncRNA	41395-2_{3001..6000}	n410211|NR_037163|lncRNA|Homosapiens||RefGeneNoncode|NR_037163||7.4038300|-0.3293164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410211|NR_037163|lncRNA|Homosapiens||RefGeneNoncode|NR_037163||7.4038300|-0.3293164	chr1	167193122	167196121	+	NA	NA	NA	NA	POU2F1	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr1:167180122-167396582"	NA	inner
CUST_45882_PI429285431	1.011346	A	0.9055791	A	1.07606624790748	0	lncRNA	50205-1_{1..648}	"gi|387912558|ref|NR_047481.1| Homo sapiens JRKL antisense RNA 1 (JRKL-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|387912558|ref|NR_047481.1| Homo sapiens JRKL antisense RNA 1 (JRKL-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NR_047481.1	NA	NA	NA	NA	NA	Unknown
CUST_20261_PI429285431	1.2916558	A	1.0873945	A	1.15209629039448	0	lncRNA	21904-1_{1..3000}	lnc-CLEC4E-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLEC4E-2:1	chr12	  8549019	  8552018	-	lnc-CLEC4E-2	lnc-CLEC4E-2:1	ENSG00000226091.2	RP11-90D4.2	CLEC6A	"hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-56.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr12:8539019-8559399"	NA	inter
LNCA_21_P0001417	5.618924	P	5.0673013	P	1.46573338197135	0	lncRNA	TCONS_00001267	NA	NA	NA	NA	XLOC_000555	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000555), lincRNA [TCONS_00001267]"	chr1:212733871-212733930	hs|1q32.3	Agilent_HUMAN_G3V2	TCONS_00001267	TCONS_00001267	chr1	212733871	212733930	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40165_PI429285431	0.9169754	A	1.7263613	A	0.570624699316614	0	lncRNA	41001-1_{1..1525}	n407883|NR_027444|lncRNA|Homosapiens||RefGeneNoncode|NR_027444||-0.7452170|-0.2779976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407883|NR_027444|lncRNA|Homosapiens||RefGeneNoncode|NR_027444||-0.7452170|-0.2779976	chrX	 47518251	 47519775	+	NA	NA	NA	NA	ELK1	"hg19_refFlat_UXT:range=chrX:47511241-475183625'pad=0,hg19_refFlat_UXT:range=chrX:47511241-475183625'pad=0 3'pad=0 strand=- repeatMasking=none,-104.60;hg19_refFlat_UXT:range=chrX:47511241-475183265'pad=0,hg19_refFlat_UXT:range=chrX:47511241-475183265'pad=0 3'pad=0 strand=- repeatMasking=none,-104.60chrX:47508251-47510003"	NA	inner
CUST_48169_PI429285431	1.9699059	A	1.8355548	A	1.09759902113951	0	lncRNA	52035-1_{1..3000}	"gi|397137828|ref|XR_159298.1| PREDICTED: Homo sapiens FLJ46026 protein (FLJ46026), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397137828|ref|XR_159298.1| PREDICTED: Homo sapiens FLJ46026 protein (FLJ46026), misc_RNA"	NA	NA	NA	NA	NA	XR_159298.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00"	NA	Unknown
LNCA_21_P0003259	4.3371253	P	4.247053	P	1.06442352421326	0	lncRNA	TCONS_00007031	NA	NA	NA	NA	XLOC_002900	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002900), lincRNA [TCONS_00007031]"	chr3:164405502-164405561	hs|3q26.1	Agilent_HUMAN_G3V2	TCONS_00007031	TCONS_00007031	chr3	164405502	164405561	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37093_PI429285431	0.8919809	A	0.89133507	A	1.00044775545618	0	lncRNA	38218-2_{3001..3791}	n345536|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1085|NULL|-1.3135300|-0.3133211	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n345536|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1085|NULL|-1.3135300|-0.3133211	chr2	 85190604	 85191394	+	NA	NA	NA	NA	KCMF1	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30chr2:85198231-85206649"	NA	inter
CUST_33158_PI429285431	8.225143	P	8.178504	P	1.03285590780736	0	lncRNA	34753-1_{1..2079}	n339850|BC051727|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2298|NULL|-0.7095280|-0.2785228	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n339850|BC051727|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2298|NULL|-0.7095280|-0.2785228	chr18	 41903165	 41905243	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20550_PI429285431	5.3540726	P	5.6147895	P	0.8346730529519	0	lncRNA	22191-1_{1..784}	lnc-XRCC5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XRCC5-2:1	chr2	217130244	217131027	+	lnc-XRCC5-2	lnc-XRCC5-2:1	ENSG00000231092.1	AC012513.6	4-Mar	"hg19_refFlat_MARCH4:range=chr2:217124035-2172349835'pad=0,hg19_refFlat_MARCH4:range=chr2:217124035-2172349835'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80chr2:217122585-217140853"	NA	inner
CUST_38882_PI429285431	0.89163	A	0.8906511	A	1.00067875202302	0	lncRNA	39869-1_{1..2950}	n384814|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003mwx.2||4.0668000|-0.3315633	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n384814|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003mwx.2||4.0668000|-0.3315633	chr6	  6360823	  6363772	-	NA	NA	NA	NA	LY86	NA	chr6:6534930-6633059	inter
CUST_1581_PI429285431	2.0138662	A	2.2347243	A	0.858054922488229	0	lncRNA	1568-3_{6001..9000}	"transcript_id ""ENST00000482787.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000482787.3"" | genecode_v17"	chr3	181676131	181679130	+	ENSG00000242512.3	ENST00000482787.3	RP11-416O18.1	RP11-416O18.1-001	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20"	NA	inter
CUST_46205_PI429285431	0.9025322	A	1.1141195	A	0.863586562405807	0	lncRNA	50447-2_{3001..4374}	"gi|333609255|ref|NR_038258.1| Homo sapiens transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 5 (TPTE2P5), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333609255|ref|NR_038258.1| Homo sapiens transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 5 (TPTE2P5), transcript variant 1, non-coding RNA"	Chr13	 41374121	 41375494	-	100616668	NR_038258.1	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC25A2:range=chr5:140682527-1406834325'pad=0,hg19_refFlat_SLC25A2:range=chr5:140682527-1406834325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_SLC25A15:range=chr13:41367363-413838035'pad=0,hg19_refFlat_SLC25A15:range=chr13:41367363-413838035'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.20"	NA	inter
CUST_1603_PI429285431	6.999593	P	7.396487	P	0.759491645443533	0	lncRNA	1589-1_{1..1524}	"transcript_id ""ENST00000446091.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446091.1"" | genecode_v17"	chr3	187683556	187685079	-	ENSG00000224187.1	ENST00000446091.1	RP11-132N15.3	RP11-132N15.3-001	NA	NA	NA	inter
LNCA_21_P0007727	0.9000207	A	0.89649755	A	1.0024450457501	0	lncRNA	XR_110322	XR_110322	XR_110322	NA	Hs.131428	LOC100507484	uncharacterized LOC100507484	ENST00000552060	THC2753319	NA	"PREDICTED: Homo sapiens hypothetical LOC100507484 (LOC100507484), miscRNA [XR_110322]"	chr12:77622447-77622388	hs|12q21.2	Agilent_HUMAN_G3V2	XR_110322	XR_110322	chr12	 77622388	 77622447	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50527_PI429285431	4.3696513	P	4.4257393	P	0.961868781811552	0	lncRNA	54223-1_{1..2243}	hg19_lincRNAsTranscripts_TCONS_l2_00030386 range=chrX:149107964-149112969 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030386 range=chrX:149107964-149112969 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	149107964	149110206	+	NA	NA	NA	NA	CXorf40B	NA	chrX:149100415-149106716	inter
CUST_7520_PI429285431	1.3612112	A	2.7327983	A	0.386465865710392	0	lncRNA	9159-2_{3001..4619}	lnc-MTUS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTUS2-1:1	chr13	 30087302	 30088920	+	lnc-MTUS2-1	lnc-MTUS2-1:1	ENSG00000246099	ENST00000499913	MTUS2	NA	chr13:30074302-30080084	inner
CUST_36939_PI429285431	0.8851545	A	0.8855319	A	0.999738440466717	0	lncRNA	38093-1_{1..840}	n345409|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_958|NULL|-1.3467000|-0.3570123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345409|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_958|NULL|-1.3467000|-0.3570123	chr22	 24268569	 24269408	-	NA	NA	NA	NA	LOC100652871	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10chr22:24278480-24284142"	NA	inter
CUST_35059_PI429285431	14.9848175	P	14.66975	P	1.24406985877408	0	lncRNA	36469-1_{1..836}	n342007|CR626523|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4488|NULL|-0.8206330|-0.2355092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342007|CR626523|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4488|NULL|-0.8206330|-0.2355092	chr12	106631813	106632648	-	NA	NA	NA	NA	CKAP4	NA	chr12:106631659-106641713	inner
CUST_33389_PI429285431	1.435915	A	1.0177768	A	1.33620207098489	0	lncRNA	34967-1_{1..1619}	n340108|AK021443|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2567|NULL|-1.1146000|-0.3493990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340108|AK021443|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2567|NULL|-1.1146000|-0.3493990	chr10	 96372043	 96373661	+	NA	NA	NA	NA	NA	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00"	NA	inter
CUST_41797_PI429285431	7.5157223	P	7.503784	P	1.00830933142475	0	lncRNA	43380-1_{1..74}	ENST00000582220 ncrna:miRNA chromosome:GRCh37:13:100105650:100105723:-1 gene:ENSG00000266207 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582220 ncrna:miRNA chromosome:GRCh37:13:100105650:100105723:-1 gene:ENSG00000266207 gene_biotype:miRNA transcript_biotype:miRNA	chr13	100105650	100105723	-	ENSG00000266207	ENST00000582220	NA	NA	NA	NA	NA	inter
LNCA_21_P0010142	0.903046	A	0.9228453	A	0.986369913443817	0	lncRNA	ENST00000416002	NA	NA	NA	NA	XLOC_013872	NA	ENST00000416002	NA	NA	"BROAD Institute lincRNA (XLOC_013872), lincRNA [TCONS_00028800]"	chr21:20022616-20022675	hs|21q21.1	Agilent_HUMAN_G3V2	ENST00000416002	ENST00000416002	chr21	 20022616	 20022675	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6926_PI429285431	0.91128206	A	0.92998713	A	0.987118321758423	0	lncRNA	6878-1_{1..820}	"transcript_id ""ENST00000429995.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429995.1"" | genecode_v17"	chr22	 20337736	 20338555	-	ENSG00000230410.1	ENST00000429995.1	XXbac-B33L19.6	XXbac-B33L19.6-002	NA	NA	NA	inter
CUST_42997_PI429285431	1.5426577	A	2.265453	A	0.605922296751185	0	lncRNA	46159-1_{1..132}	ENST00000383895 ncrna:snoRNA chromosome:GRCh37:X:118921316:118921447:-1 gene:ENSG00000206622 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000383895 ncrna:snoRNA chromosome:GRCh37:X:118921316:118921447:-1 gene:ENSG00000206622 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	118921316	118921447	-	ENSG00000206622	ENST00000383895	NA	NA	UPF3B	NA	chrX:118923864-118931447	inter
LNCA_21_P0002199	7.5659814	P	7.745914	P	0.882744235478434	0	lncRNA	ENST00000433893	NA	NA	NA	NA	XLOC_001428	NA	ENST00000433893	NA	NA	"BROAD Institute lincRNA (XLOC_001428), lincRNA [TCONS_00003636]"	chr2:37553862-37553921	hs|2p22.2	Agilent_HUMAN_G3V2	ENST00000433893	ENST00000433893	chr2	 37553862	 37553921	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26296_PI429285431	3.0598934	A	3.3299494	P	0.829287355370924	0	lncRNA	27803-1_{1..319}	lnc-MDGA1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MDGA1-2:1	chr6	 38144864	 38145182	-	lnc-MDGA1-2	lnc-MDGA1-2:1	ENSG00000225874.1	RP3-322I12.2	BTBD9	NA	chr6:38136227-38155069	inner
CUST_25111_PI429285431	2.8163521	A	3.5860636	P	0.586534753981028	0	lncRNA	26649-1_{1..566}	lnc-ADAMTS18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAMTS18-1:1	chr16	 77283791	 77284356	-	lnc-ADAMTS18-1	lnc-ADAMTS18-1:1	ENSG00000261063.1	RP11-538I12.2	NA	NA	NA	inter
LNCA_21_P0009251	4.6458845	P	5.292861	P	0.638617281923531	0	lncRNA	TCONS_00025417	NA	NA	NA	NA	XLOC_012226	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012226), lincRNA [TCONS_00025417]"	chr17:46781374-46781433	hs|17q21.32	Agilent_HUMAN_G3V2	TCONS_00025417	TCONS_00025417	chr17	 46781374	 46781433	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8867_PI429285431	0.89405555	A	0.9026406	A	0.994066967164093	0	lncRNA	10406-1_{1..1433}	lnc-COL25A1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL25A1-1:4	chr4	110335414	110336846	-	lnc-COL25A1-1	lnc-COL25A1-1:4	ENSG00000247950	RP11-264J9.1	NA	NA	NA	inter
CUST_16632_PI429285431	6.022489	P	6.110901	P	0.940557467917116	0	lncRNA	18334-1_{1..1304}	lnc-RNASEH2B-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNASEH2B-3:6	chr13	 50982190	 50983493	+	lnc-RNASEH2B-3	lnc-RNASEH2B-3:6	XLOC_010390	linc-RNASEH2B-1	NA	NA	NA	inter
CUST_45013_PI429285431	10.675078	P	10.300081	P	1.29683685795177	0	lncRNA	49515-1_{1..728}	"gi|218505842|ref|NR_002822.3| Homo sapiens MGC72080 pseudogene (MGC72080), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|218505842|ref|NR_002822.3| Homo sapiens MGC72080 pseudogene (MGC72080), non-coding RNA"	Chr7	 97595908	 97596635	-	389538	NR_002822.3	NA	NA	NA	NA	NA	inter
CUST_7791_PI429285431	6.06679	P	4.0360937	P	4.08602009713474	0	lncRNA	9415-1_{1..190}	lnc-XRN2-2:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XRN2-2:14	chr20	 21227117	 21227306	+	lnc-XRN2-2	lnc-XRN2-2:14	ENSG00000088970	PLK1S1	PLK1S1	NA	chr20:21217117-21227260	inner
CUST_10013_PI429285431	4.6167293	P	4.991312	P	0.771328487450817	0	lncRNA	11538-2_{3001..3366}	lnc-SLC17A9-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SLC17A9-4:1	chr20	 61719286	 61719651	+	lnc-SLC17A9-4	lnc-SLC17A9-4:1	XLOC_013604	linc-BIRC7-4	NA	NA	NA	inter
LNCA_21_P0008425	0.91081357	A	2.9800956	A	0.238278051197768	0	lncRNA	TCONS_00022726	NA	NA	NA	NA	XLOC_011006	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011006), lincRNA [TCONS_00022726]"	chr14:44861776-44861717	hs|14q21.2	Agilent_HUMAN_G3V2	TCONS_00022726	TCONS_00022726	chr14	 44861717	 44861776	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21195_PI429285431	3.4128249	P	4.2690926	P	0.552379735791723	0	lncRNA	22820-1_{1..577}	lnc-CIT-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CIT-5:1	chr12	119614212	119614788	-	lnc-CIT-5	lnc-CIT-5:1	ENSG00000256884.1	RP11-64B16.3	HSPB8	NA	chr12:119616595-119624289	inter
CUST_39565_PI429285431	5.6986074	P	6.0128365	P	0.804280641019299	0	lncRNA	40509-1_{1..1056}	n387525|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011gqt.1||-1.0399300|-0.2705092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387525|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011gqt.1||-1.0399300|-0.2705092	chr6	  1186622	  1187677	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48348_PI429285431	0.897275	A	2.4548101	A	0.339731029828264	0	lncRNA	52205-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00001276 range=chr1:65455778-65463009 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001276 range=chr1:65455778-65463009 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 65455778	 65458777	-	NA	NA	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-31.10;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50"	NA	inter
CUST_22769_PI429285431	4.3386116	P	4.865902	P	0.693856679079978	0	lncRNA	24351-1_{1..563}	lnc-PCGF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PCGF2-1:1	chr17	 36876493	 36877055	-	lnc-PCGF2-1	lnc-PCGF2-1:1	ENSG00000263975.1	CTB-58E17.9	MLLT6	"hg19_refFlat_MLLT6:range=chr17:36861886-368818515'pad=0,hg19_refFlat_MLLT6:range=chr17:36861886-368818515'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.70chr17:36866493-36886056"	NA	inner
CUST_26242_PI429285431	8.195225	P	9.401796	P	0.433297254377632	0	lncRNA	27749-1_{1..575}	lnc-RASAL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RASAL1-1:1	chr12	113455204	113455778	-	lnc-RASAL1-1	lnc-RASAL1-1:1	ENSG00000257452.1	RP1-71H24.1	OAS2	"hg19_refFlat_OAS1:range=chr12:113344845-1133555625'pad=0,hg19_refFlat_OAS1:range=chr12:113344845-1133555625'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_OAS1:range=chr12:113344845-1133574985'pad=0,hg19_refFlat_OAS1:range=chr12:113344845-1133574985'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_OAS1:range=chr12:113344845-1133573585'pad=0,hg19_refFlat_OAS1:range=chr12:113344845-1133573585'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60chr12:113445204-113449528"	NA	inter
CUST_49147_PI429285431	0.8903725	A	0.89550495	A	0.996448777312669	0	lncRNA	52973-1_{1..1455}	hg19_lincRNAsTranscripts_TCONS_l2_00021266 range=chr4:120355717-120366886 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021266 range=chr4:120355717-120366886 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	120355717	120357171	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0,hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30"	NA	inter
CUST_27656_PI429285431	1.5332613	A	1.424763	A	1.07810545323508	0	lncRNA	29234-1_{1..217}	n324863|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171078|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171078|-1.0453000|-0.5592430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324863|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171078|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171078|-1.0453000|-0.5592430	chr21	 24337442	 24337658	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33952_PI429285431	2.1257722	A	1.0774117	A	2.06817820338955	0	lncRNA	35492-1_{1..1667}	n340754|AK054819|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3217|NULL|-1.0543200|-0.3185054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340754|AK054819|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3217|NULL|-1.0543200|-0.3185054	chr17	 53034120	 53035786	-	NA	NA	NA	NA	COX11	NA	chr17:53029259-53045787	inter
CUST_3861_PI429285431	1.2092099	A	0.9578769	A	1.19030640875907	0	lncRNA	3830-1_{1..484}	"transcript_id ""ENST00000531749.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531749.1"" | genecode_v17"	chr11	 13806937	 13807420	+	ENSG00000255411.1	ENST00000531749.1	RP11-98J9.1	RP11-98J9.1-001	NA	NA	NA	inter
CUST_18715_PI429285431	6.1693583	P	8.4065895	P	0.212092983608543	0	lncRNA	20413-1_{1..1589}	lnc-SART1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SART1-1:3	chr11	 65727288	 65728876	+	lnc-SART1-1	lnc-SART1-1:3	ENSG00000175513	TSGA10IP	SART1	NA	chr11:65729160-65737434	inner
CUST_8401_PI429285431	0.8887219	A	2.3781366	A	0.356157012152607	0	lncRNA	9978-1_{1..578}	lnc-SOX2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SOX2-1:7	chr3	181348643	181349220	+	lnc-SOX2-1	lnc-SOX2-1:7	ENSG00000242808	RP11-4B14.2	NA	NA	NA	inter
LNCA_21_P0009832	0.89912564	A	0.9032915	A	0.997116610860944	0	lncRNA	ENST00000432942	NA	NA	NA	NA	XLOC_013477	NA	ENST00000432942	THC2786037	NA	"BROAD Institute lincRNA (XLOC_013477), lincRNA [TCONS_00027908]"	chr20:20953112-20953171	hs|20p11.23	Agilent_HUMAN_G3V2	ENST00000432942	ENST00000432942	chr20	 20953112	 20953171	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012227	0.8981913	A	0.9019428	A	0.997403036311888	0	lncRNA	TCONS_l2_00017465	NA	NA	NA	NA	XLOC_l2_009172	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009172), lincRNA [TCONS_l2_00017465]"	chr21:26768944-26768885	hs|21q21.2	Agilent_HUMAN_G3V2	TCONS_l2_00017465	TCONS_l2_00017465	chr21	 26768885	 26768944	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011060	2.8391998	A	2.7696536	A	1.04938654696522	0	lncRNA	TCONS_l2_00005793	NA	NA	NA	NA	XLOC_l2_003073	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003073), lincRNA [TCONS_l2_00005793]"	chr12:80818870-80818929	hs|12q21.31	Agilent_HUMAN_G3V2	TCONS_l2_00005793	TCONS_l2_00005793	chr12	 80818870	 80818929	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15078_PI429285431	1.4066958	A	1.1732707	A	1.17562268268525	0	lncRNA	16742-1_{1..694}	lnc-CALN1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CALN1-1:7	chr7	 69061641	 69062334	-	lnc-CALN1-1	lnc-CALN1-1:7	XLOC_006493	linc-SBDS-8	AUTS2	NA	chr7:69063905-69071679	inter
CUST_9485_PI429285431	0.89085174	A	0.892846	A	0.99861863926197	0	lncRNA	10992-2_{3001..4884}	lnc-MAGI2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAGI2-1:2	chr7	 79095173	 79097056	-	lnc-MAGI2-1	lnc-MAGI2-1:2	XLOC_006507	linc-MAGI2-3	MAGI2	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.04;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90chr7:79082173-79082890"	NA	inter
CUST_25414_PI429285431	2.033936	A	2.0660944	A	0.977956093339179	0	lncRNA	26944-1_{1..1966}	lnc-TGIF1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TGIF1-2:4	chr18	  3596577	  3598542	+	lnc-TGIF1-2	lnc-TGIF1-2:4	ENSG00000177337.3	RP11-874J12.2	DLGAP1	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30chr18:3586577-3608350"	NA	inner
CUST_13456_PI429285431	0.90233374	A	0.91386896	A	0.992036274608522	0	lncRNA	15094-1_{1..354}	lnc-HEXA-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HEXA-3:5	chr15	 72763998	 72764351	-	lnc-HEXA-3	lnc-HEXA-3:5	XLOC_011523	linc-HEXA-1	ARIH1	NA	chr15:72766667-72774042	inter
CUST_44312_PI429285431	0.9095585	A	1.0211064	A	0.92559443782741	0	lncRNA	48944-1_{1..513}	"gi|387157915|ref|NR_046634.1| Homo sapiens OPA1 antisense RNA 1 (OPA1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|387157915|ref|NR_046634.1| Homo sapiens OPA1 antisense RNA 1 (OPA1-AS1), non-coding RNA"	Chr3	193336388	193336900	-	100873941	NR_046634.1	NA	NA	NA	"hg19_refFlat_OPA1:range=chr3:193311167-1934099165'pad=0,hg19_refFlat_OPA1:range=chr3:193311167-1934099165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
CUST_22984_PI429285431	4.886072	P	4.9124284	P	0.981896999767092	0	lncRNA	24558-1_{1..550}	lnc-MPHOSPH8-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MPHOSPH8-3:1	chr13	 20653370	 20653919	+	lnc-MPHOSPH8-3	lnc-MPHOSPH8-3:1	ENSG00000230625.1	ZMYM2-IT1	ZMYM2	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10chr13:20643370-20663696"	NA	inner
CUST_25905_PI429285431	0.8823905	A	0.88192785	A	1.00032073596787	0	lncRNA	27424-1_{1..442}	lnc-SYCP3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SYCP3-2:2	chr12	102044594	102045035	-	lnc-SYCP3-2	lnc-SYCP3-2:2	ENSG00000257514.1	RP11-755O11.2	MYBPC1	"hg19_refFlat_MYBPC1:range=chr12:101988849-1020794605'pad=0,hg19_refFlat_MYBPC1:range=chr12:101988849-1020794605'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MYBPC1:range=chr12:101988849-1020781735'pad=0,hg19_refFlat_MYBPC1:range=chr12:101988849-1020781735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MYBPC1:range=chr12:101988849-1020781835'pad=0,hg19_refFlat_MYBPC1:range=chr12:101988849-1020781835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MYBPC1:range=chr12:101988849-1020794105'pad=0,hg19_refFlat_MYBPC1:range=chr12:101988849-1020794105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr12:102034594-102054726"	NA	inner
CUST_13529_PI429285431	0.8994818	A	0.8911479	A	1.0057933361267	0	lncRNA	15169-1_{1..430}	lnc-ZFP42-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP42-2:2	chr4	188543796	188544225	+	lnc-ZFP42-2	lnc-ZFP42-2:2	XLOC_003829	linc-ZFP42-3	NA	NA	NA	inter
CUST_21095_PI429285431	0.9123192	A	0.9179453	A	0.996107878662661	0	lncRNA	22720-1_{1..902}	lnc-SNX11-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNX11-2:2	chr17	 46385295	 46386196	+	lnc-SNX11-2	lnc-SNX11-2:2	ENSG00000235300.2	AC090627.1	SKAP1	NA	chr17:46375295-46396124	inner
CUST_29424_PI429285431	4.1918774	P	4.566728	P	0.77118526957642	0	lncRNA	31180-1_{1..539}	n332800|AF055708|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064668|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064668|2.4820700|-0.2352045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332800|AF055708|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064668|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064668|2.4820700|-0.2352045	chr1	160789092	160789630	+	NA	NA	NA	NA	CD244	NA	chr1:160799950-160807606	inner
CUST_16489_PI429285431	2.0034735	A	1.5029707	A	1.41470652206442	0	lncRNA	18187-1_{1..1152}	lnc-TCF19-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF19-1:6	chr6	 31196383	 31197534	+	lnc-TCF19-1	lnc-TCF19-1:6	XLOC_005244	linc-MICA-2	NA	NA	NA	inter
CUST_2597_PI429285431	0.90513384	A	1.0014178	A	0.935439360854223	0	lncRNA	2584-2_{3001..3334}	"transcript_id ""ENST00000441184.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000441184.1"" | genecode_v17"	chr6	108447837	108448170	+	ENSG00000225174.1	ENST00000441184.1	OSTM1-AS1	OSTM1-AS1-001	NR2E1	NA	chr6:108487215-108490596	inter
CUST_9764_PI429285431	7.882727	P	7.870296	P	1.00865374159746	0	lncRNA	11281-1_{1..277}	lnc-SERPINI1-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERPINI1-4:7	chr3	167632615	167632891	+	lnc-SERPINI1-4	lnc-SERPINI1-4:7	XLOC_002909	linc-MYNN-5	NA	NA	NA	inter
CUST_44751_PI429285431	2.2523603	A	1.1265339	A	2.18226514558035	0	lncRNA	49298-1_{1..1197}	"gi|193804930|ref|NR_024015.1| Homo sapiens testis development related 1 (non-protein coding) (TDRG1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|193804930|ref|NR_024015.1| Homo sapiens testis development related 1 (non-protein coding) (TDRG1), non-coding RNA"	Chr6	 40346163	 40347359	+	732253	NR_024015.1	NA	NA	NA	NA	NA	inter
CUST_44317_PI429285431	0.9151601	A	1.4152174	A	0.707078697348448	0	lncRNA	48949-1_{1..1433}	"gi|384367975|ref|NR_047573.1| Homo sapiens TMEM44 antisense RNA 1 (TMEM44-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|384367975|ref|NR_047573.1| Homo sapiens TMEM44 antisense RNA 1 (TMEM44-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NR_047573.1	NA	NA	NA	NA	NA	Unknown
CUST_36390_PI429285431	7.5755115	P	7.2685957	P	1.23706027804041	0	lncRNA	37608-1_{1..1226}	n344907|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_456|NULL|-1.2791200|-0.3806087	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344907|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_456|NULL|-1.2791200|-0.3806087	chr6	 56924095	 56925320	+	NA	NA	NA	NA	KIAA1586	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90chr6:56914095-56920023"	NA	inter
CUST_26515_PI429285431	2.5930235	A	2.904248	A	0.805957405459673	0	lncRNA	28022-1_{1..1154}	lnc-HAO2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HAO2-2:4	chr1	119776081	119777234	+	lnc-HAO2-2	lnc-HAO2-2:4	ENSG00000231365.1	RP11-418J17.1	NA	NA	NA	inter
CUST_21755_PI429285431	12.199842	P	11.911522	P	1.22121735730817	0	lncRNA	23365-1_{1..524}	lnc-PDCD11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PDCD11-2:1	chr10	105310276	105310799	+	lnc-PDCD11-2	lnc-PDCD11-2:1	ENSG00000226431.1	RP11-416N2.3	NEURL	NA	chr10:105300276-105320721	inner
CUST_25825_PI429285431	5.9388227	P	6.0453706	P	0.928807868937342	0	lncRNA	27346-1_{1..609}	lnc-C17orf48-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf48-2:7	chr17	 10669996	 10670604	+	lnc-C17orf48-2	lnc-C17orf48-2:7	ENSG00000263400.1	CTC-297N7.5	NA	"hg19_refFlat_TMEM220:range=chr17:10618770-106331685'pad=0,hg19_refFlat_TMEM220:range=chr17:10618770-106331685'pad=0 3'pad=0 strand=- repeatMasking=none,-98.90"	NA	inter
CUST_20380_PI429285431	0.9039507	A	0.89165187	A	1.00856133976978	0	lncRNA	22022-1_{1..470}	lnc-BBOX1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BBOX1-1:2	chr11	 27503755	 27504224	+	lnc-BBOX1-1	lnc-BBOX1-1:2	ENSG00000254862.1	RP11-159H22.2	LIN7C	NA	chr11:27505366-27513980	inter
CUST_16559_PI429285431	3.6429996	P	3.5159178	P	1.09208246445374	0	lncRNA	18260-1_{1..426}	lnc-VWF-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VWF-2:1	chr12	  6289765	  6290190	-	lnc-VWF-2	lnc-VWF-2:1	XLOC_009994	linc-VWF	NA	NA	NA	inter
CUST_43924_PI429285431	3.7592752	P	2.8542492	A	1.87257824184544	0	lncRNA	48636-2_{3001..6000}	"gi|254039637|ref|NR_028063.1| Homo sapiens GRIP and coiled-coil domain containing 2 (GCC2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254039637|ref|NR_028063.1| Homo sapiens GRIP and coiled-coil domain containing 2 (GCC2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_028063.1	NA	NA	NA	NA	NA	Unknown
CUST_21771_PI429285431	6.148358	P	5.9180064	P	1.17312081631387	0	lncRNA	23381-1_{1..718}	lnc-PRSS27-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRSS27-2:3	chr16	  2723284	  2724001	-	lnc-PRSS27-2	lnc-PRSS27-2:3	ENSG00000261169.1	RP11-20I23.12	KCTD5	NA	chr16:2732495-2733423	inter
LNCA_21_P0014589	11.322628	P	12.081723	P	0.590866864204533	0	lncRNA	XR_110415	XR_110415	XR_110415	NA	Hs.568860	LOC100507212	uncharacterized LOC100507212	NA	THC2608425	NA	"PREDICTED: Homo sapiens hypothetical LOC100507212, transcript variant 3 (LOC100507212), miscRNA [XR_110415]"	chr10:75013925-75013984	hs|10q22.2	Agilent_HUMAN_G3V2	XR_110415	XR_110415	chr10	 75013925	 75013984	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_833_PI429285431	0.8992973	A	0.88834685	A	1.00761915269023	0	lncRNA	827-1_{1..564}	"transcript_id ""ENST00000591221.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591221.1"" | genecode_v17"	chr2	 35056445	 35057008	+	ENSG00000226994.2	ENST00000591221.1	AC012593.1	AC012593.1-010	NA	NA	NA	inter
CUST_12912_PI429285431	0.88420695	A	1.2130716	A	0.796162789254393	0	lncRNA	14541-1_{1..2153}	lnc-KIAA1462-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1462-1:1	chr10	 30289889	 30292041	-	lnc-KIAA1462-1	lnc-KIAA1462-1:1	XLOC_008764	linc-SVIL-1	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-26.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30"	NA	inter
CUST_33111_PI429285431	1.8126359	A	1.1428065	A	1.59088483280891	0	lncRNA	34711-1_{1..3000}	n339800|AL832590|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2247|NULL|-1.1840500|-0.3057429	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339800|AL832590|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2247|NULL|-1.1840500|-0.3057429	chr18	 13514518	 13517517	+	NA	NA	NA	NA	C18orf1	NA	chr18:13504518-13532887	inner
LNCA_21_P0009270	0.89463866	A	0.8916787	A	1.00205379408039	0	lncRNA	ENST00000419257	NA	BC034818	NA	Hs.620808	XLOC_012300	NA	ENST00000419257	THC2607835	NA	"BROAD Institute lincRNA (XLOC_012300), lincRNA [TCONS_00025480]"	chr17:70085797-70089110	hs|17q24.3	Agilent_HUMAN_G3V2	ENST00000419257	ENST00000419257	chr17	 70085797	 70089110	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007836	3.1184807	P	3.3786352	P	0.834998493616519	0	lncRNA	TCONS_00021113	NA	NA	NA	NA	XLOC_009728	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009728), lincRNA [TCONS_00021113]"	chr12:47813960-47814019	hs|12q13.11	Agilent_HUMAN_G3V2	TCONS_00021113	TCONS_00021113	chr12	 47813960	 47814019	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014185	2.2101514	A	3.1100605	P	0.535920496989333	0	lncRNA	XR_108741	XR_108741	XR_108741	NA	Hs.673108	LOC100505960	uncharacterized LOC100505960	NA	THC2503940	NA	"PREDICTED: Homo sapiens hypothetical LOC100505960 (LOC100505960), miscRNA [XR_108741]"	chr7:11202537-11202478	hs|7p21.3	Agilent_HUMAN_G3V2	XR_108741	XR_108741	chr7	 11202478	 11202537	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21020_PI429285431	0.89963496	A	0.8901977	A	1.00656285191226	0	lncRNA	22648-1_{1..573}	lnc-NEDD1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NEDD1-3:1	chr12	 97578854	 97579426	+	lnc-NEDD1-3	lnc-NEDD1-3:1	ENSG00000258131.1	RP11-541G9.1	NA	NA	NA	inter
CUST_50393_PI429285431	6.608533	P	7.204333	P	0.661677441566868	0	lncRNA	54098-2_{3001..3176}	hg19_lincRNAsTranscripts_TCONS_l2_00030415 range=chrX:281389-284630 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030415 range=chrX:281389-284630 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	   284389	   284564	-	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80"	NA	inter
LNCA_21_P0006653	3.01968	P	3.3082044	P	0.81873904327419	0	lncRNA	ENST00000420825	NA	NA	NA	NA	XLOC_008390	NA	ENST00000420825	THC2669997	NA	"BROAD Institute lincRNA (XLOC_008390), lincRNA [TCONS_00017788]"	chr10:11012652-11012711	hs|10p14	Agilent_HUMAN_G3V2	ENST00000420825	ENST00000420825	chr10	 11012652	 11012711	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014782	10.986198	P	10.978643	P	1.0052504625698	0	lncRNA	XR_132564	XR_132564	XR_132564	NA	Hs.640950	LOC100652913	uncharacterized LOC100652913	NA	THC2516830	NA	"PREDICTED: Homo sapiens hypothetical LOC100652913 (LOC100652913), miscRNA [XR_132564]"	chr9:84545205-84545146	hs|9q21.32	Agilent_HUMAN_G3V2	XR_132564	XR_132564	chr9	 84545146	 84545205	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004986	0.8990929	A	0.8957006	A	1.00235412980304	0	lncRNA	TCONS_00012039	NA	NA	NA	NA	XLOC_005574	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005574), lincRNA [TCONS_00012039]"	chr6:1309665-1308821	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_00012039	TCONS_00012039	chr6	  1308821	  1309665	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32512_PI429285431	0.8817859	A	0.9081316	A	0.981904282204863	0	lncRNA	34179-1_{1..1039}	n339116|BC038530|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1546|NULL|-1.1607900|-0.3213845	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n339116|BC038530|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1546|NULL|-1.1607900|-0.3213845	chr2	208084387	208085425	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48882_PI429285431	5.348138	P	5.627008	P	0.824236352830613	0	lncRNA	52719-1_{1..1211}	hg19_lincRNAsTranscripts_TCONS_l2_00018657 range=chr3:75263634-75264910 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018657 range=chr3:75263634-75264910 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	 75263634	 75264844	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25191_PI429285431	4.736069	P	5.0825233	P	0.786514735408963	0	lncRNA	26722-1_{1..784}	lnc-HIVEP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HIVEP1-1:2	chr6	 12008512	 12009295	+	lnc-HIVEP1-1	lnc-HIVEP1-1:2	ENSG00000229896.1	RP11-456H18.2	HIVEP1	NA	chr6:12012724-12019089	inter
CUST_1688_PI429285431	1.0352559	A	0.8903821	A	1.10563393356912	0	lncRNA	1671-1_{1..640}	"transcript_id ""ENST00000505494.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505494.1"" | genecode_v17"	chr4	 10686627	 10687266	+	ENSG00000249334.1	ENST00000505494.1	RP11-61G19.1	RP11-61G19.1-001	CLNK	NA	chr4:10676627-10686386	inter
CUST_32459_PI429285431	5.3372188	P	3.8495946	P	2.80426793721688	0	lncRNA	34130-1_{1..1940}	n339061|BC035835|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1490|NULL|-0.1908040|-0.4242216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339061|BC035835|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1490|NULL|-0.1908040|-0.4242216	chr2	190611389	190613328	-	NA	NA	NA	NA	ANKAR	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50chr2:190601389-190611376"	NA	inner
CUST_14363_PI429285431	4.83845	P	5.4910483	P	0.636133601988452	0	lncRNA	16022-1_{1..815}	lnc-ANKRD27-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ANKRD27-1:1	chr19	 33182269	 33183083	-	lnc-ANKRD27-1	lnc-ANKRD27-1:1	XLOC_013301	linc-ANKRD27	NUDT19	NA	chr19:33182867-33192862	inter
CUST_37619_PI429285431	2.0071852	A	2.3932636	A	0.765206800348036	0	lncRNA	38716-1_{1..515}	n346097|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1647|NULL|-1.3662700|-0.1713722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346097|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1647|NULL|-1.3662700|-0.1713722	chr15	 28916950	 28917464	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44522_PI429285431	0.8891847	A	0.8914368	A	0.998440181018801	0	lncRNA	49117-2_{3001..3827}	"gi|310119523|ref|XR_108573.1| PREDICTED: Homo sapiens LIFR antisense RNA 1 (LIFR-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310119523|ref|XR_108573.1| PREDICTED: Homo sapiens LIFR antisense RNA 1 (LIFR-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_108573.1	NA	NA	NA	NA	NA	Unknown
CUST_29935_PI429285431	2.676402	A	2.7767038	A	0.93283782908194	0	lncRNA	31699-1_{1..496}	n334123|M61867|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195994|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195994|1.4198000|-0.4407653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334123|M61867|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195994|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195994|1.4198000|-0.4407653	chr7	 64439556	 64440051	-	NA	NA	NA	NA	ZNF117	NA	chr7:64433295-64451414	inner
CUST_22096_PI429285431	1.0362577	A	1.363889	A	0.796843714327207	0	lncRNA	23701-1_{1..450}	lnc-SLTM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLTM-1:1	chr15	 59156938	 59157387	-	lnc-SLTM-1	lnc-SLTM-1:1	ENSG00000259353.1	RP11-30K9.5	FAM63B	"hg19_refFlat_ZNF444:range=chr19:56658281-566715705'pad=0,hg19_refFlat_ZNF444:range=chr19:56658281-566715705'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10chr15:59146938-59149754"	NA	inter
LNCA_33_P3259745	2.2369125	A	1.2803397	A	1.94069419068708	0	lncRNA	ENST00000415242	XR_111804	XR_111804	NA	Hs.514963	NA	NA	ENST00000415242	THC2490934	NA	"PREDICTED: Homo sapiens FLJ44881 (FLJ44881), miscRNA [XR_111804]"	chr18:74403391-74403450	hs|18q23	Agilent_HUMAN_G3V2	ENST00000415242	ENST00000415242	chr18	 74403391	 74403450	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4183_PI429285431	1.3944645	A	0.90912193	A	1.39991823871957	0	lncRNA	4142-1_{1..286}	"transcript_id ""ENST00000590955.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590955.1"" | genecode_v17"	chr12	 23012099	 23012384	+	ENSG00000256995.2	ENST00000590955.1	RP11-114G22.1	RP11-114G22.1-008	NA	NA	NA	inter
CUST_39121_PI429285431	1.8149344	A	2.6187162	A	0.572845582305017	0	lncRNA	40097-1_{1..1213}	n385700|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bxu.2||-0.0419237|-0.1543371	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385700|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bxu.2||-0.0419237|-0.1543371	chr9	132105694	132106906	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-62.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60"	NA	inter
CUST_39990_PI429285431	0.9093334	A	0.91827816	A	0.993819145382783	0	lncRNA	40856-1_{1..2253}	n407093|NR_024594|lncRNA|Homosapiens||RefGeneNoncode|NR_024594||0.0668074|-0.2146727	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407093|NR_024594|lncRNA|Homosapiens||RefGeneNoncode|NR_024594||0.0668074|-0.2146727	chr20	 45947245	 45949497	+	NA	NA	NA	NA	ZMYND8	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30chr20:45937245-45959498"	NA	inner
CUST_42239_PI429285431	11.821069	P	11.965223	P	0.904909863426302	0	lncRNA	44374-1_{1..68}	ENST00000387382 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:5512:5579:1 gene:ENSG00000210117 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000387382 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:5512:5579:1 gene:ENSG00000210117 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	chrMT	     5512	     5579	+	ENSG00000210117	ENST00000387382	NA	NA	NA	NA	NA	Unknown
CUST_37114_PI429285431	5.020629	P	5.0501738	P	0.979729373620898	0	lncRNA	38239-1_{1..2489}	n345557|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1106|NULL|-1.3096300|-0.4409897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345557|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1106|NULL|-1.3096300|-0.4409897	chr2	183774744	183777232	-	NA	NA	NA	NA	NCKAP1	NA	chr2:183789605-183797397	inter
CUST_8605_PI429285431	0.9220018	A	0.9821358	A	0.959175025359486	0	lncRNA	10160-1_{1..3000}	lnc-DHRS12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-DHRS12-1:1	chr13	 52419152	 52422151	-	lnc-DHRS12-1	lnc-DHRS12-1:1	ENSG00000246013	NCRNA00282	NA	"hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.91"	NA	inter
CUST_31243_PI429285431	3.4741642	P	2.7943754	A	1.60190523080623	0	lncRNA	33032-1_{1..2624}	n337693|AY044234|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|75|NULL|7.2152500|-0.1871231	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337693|AY044234|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|75|NULL|7.2152500|-0.1871231	chrX	 50376555	 50379178	-	NA	NA	NA	NA	SHROOM4	NA	chrX:50366555-50396683	inter
CUST_49149_PI429285431	2.915802	A	3.0642936	P	0.902193251687432	0	lncRNA	52975-1_{1..557}	hg19_lincRNAsTranscripts_TCONS_l2_00021268 range=chr4:120365449-120366883 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021268 range=chr4:120365449-120366883 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	120365449	120366005	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0,hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_34304_PI429285431	4.965558	P	4.926916	P	1.02714652474124	0	lncRNA	35799-2_{3001..5463}	n341163|BX649132|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3629|NULL|-0.6899850|-0.3148593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341163|BX649132|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3629|NULL|-0.6899850|-0.3148593	chr11	133170083	133172545	-	NA	NA	NA	NA	OPCML	NA	chr11:133157083-133182529	inner
CUST_5202_PI429285431	0.91048586	A	1.0171275	A	0.928747521033849	0	lncRNA	5143-1_{1..451}	"transcript_id ""ENST00000561701.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561701.1"" | genecode_v17"	chr15	 62566362	 62566812	+	ENSG00000261296.1	ENST00000561701.1	RP11-299H22.6	RP11-299H22.6-002	NA	NA	NA	inter
CUST_7284_PI429285431	5.6066775	P	5.6035156	P	1.00219406551705	0	lncRNA	8181-1_{1..335}	"transcript_id ""ENST00000363013.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000363013.1"" | genecode_v17"	chr11	 16863800	 16864134	+	ENSG00000199883.1	ENST00000363013.1	RN7SKP90	RN7SKP90-201	PLEKHA7	NA	chr11:16853800-16874134	inner
CUST_32905_PI429285431	7.305453	P	6.8568583	P	1.36471027248657	0	lncRNA	34530-1_{1..2002}	n339574|BC037842|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2018|NULL|-0.9077850|-0.2217805	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339574|BC037842|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2018|NULL|-0.9077850|-0.2217805	chr3	134318764	134320765	-	NA	NA	NA	NA	KY	NA	chr3:134318765-134330752	inner
LNCA_21_P0001304	0.9108233	A	1.7343866	A	0.565044618923569	0	lncRNA	TCONS_00000954	NA	NA	NA	NA	XLOC_000213	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000213), lincRNA [TCONS_00000954]"	chr1:56703473-56703532	hs|1p32.2	Agilent_HUMAN_G3V2	TCONS_00000954	TCONS_00000954	chr1	 56703473	 56703532	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49633_PI429285431	1.0914799	A	1.154315	A	0.957380880547689	0	lncRNA	53417-1_{1..299}	hg19_lincRNAsTranscripts_TCONS_l2_00026412 range=chr7:20046910-20070561 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026412 range=chr7:20046910-20070561 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 20046910	 20047208	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41404_PI429285431	1.0808579	A	0.9135605	A	1.12295288593739	0	lncRNA	42522-1_{1..85}	ENST00000585286 ncrna:miRNA chromosome:GRCh37:10:114393929:114394013:1 gene:ENSG00000264763 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585286 ncrna:miRNA chromosome:GRCh37:10:114393929:114394013:1 gene:ENSG00000264763 gene_biotype:miRNA transcript_biotype:miRNA	chr10	114393929	114394013	+	ENSG00000264763	ENST00000585286	NA	NA	VTI1A	NA	chr10:114383929-114404013	inner
LNCA_21_P0008617	5.666071	P	5.947194	P	0.822950179939277	0	lncRNA	TCONS_00023359	NA	NA	NA	NA	XLOC_011216	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011216), lincRNA [TCONS_00023359]"	chr15:39739878-39739937	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00023359	TCONS_00023359	chr15	 39739878	 39739937	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13677_PI429285431	0.91646165	A	1.7765408	A	0.550922332078005	0	lncRNA	15314-1_{1..281}	lnc-FAM78A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM78A-2:1	chr9	134224435	134224715	-	lnc-FAM78A-2	lnc-FAM78A-2:1	XLOC_007875	linc-FAM78A-2	NA	NA	NA	inter
CUST_37704_PI429285431	0.9310372	A	1.0101818	A	0.946618747753367	0	lncRNA	38798-1_{1..896}	n346199|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1749|NULL|-1.4447100|-0.2358635	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346199|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1749|NULL|-1.4447100|-0.2358635	chr16	 50769970	 50770865	-	NA	NA	NA	NA	CYLD	NA	chr16:50775961-50784752	inter
CUST_10730_PI429285431	7.212249	P	7.2381673	P	0.982195215525973	0	lncRNA	12268-1_{1..2294}	lnc-SGTB-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SGTB-4:1	chr5	 65735975	 65738268	-	lnc-SGTB-4	lnc-SGTB-4:1	XLOC_004850	linc-SGTB-2	NA	NA	NA	inter
LNCA_21_P0011548	1.7143846	A	1.6552846	A	1.04181563966289	0	lncRNA	TCONS_l2_00010931	NA	NA	NA	NA	XLOC_l2_005869	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005869), lincRNA [TCONS_l2_00010931]"	chr17:65258077-65258136	hs|17q24.2	Agilent_HUMAN_G3V2	TCONS_l2_00010931	TCONS_l2_00010931	chr17	 65258077	 65258136	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50379_PI429285431	8.519204	P	8.8126545	P	0.815948216087435	0	lncRNA	54089-3_{6001..7136}	hg19_lincRNAsTranscripts_TCONS_l2_00030325 range=chrX:106805389-106848479 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030325 range=chrX:106805389-106848479 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	106811389	106812524	+	NA	NA	NA	NA	FRMPD3	NA	chrX:106795389-106848479	inter
CUST_1107_PI429285431	1.355494	A	1.2499892	A	1.07587077253828	0	lncRNA	1096-1_{1..770}	"transcript_id ""ENST00000597893.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597893.1"" | genecode_v17"	chr2	145425654	145426423	+	ENSG00000226674.3	ENST00000597893.1	AC074093.1	AC074093.1-028	NA	NA	NA	inter
CUST_11975_PI429285431	1.0510175	A	0.9697988	A	1.05791132160393	0	lncRNA	13555-1_{1..896}	lnc-RP4-725G10.1.1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RP4-725G10.1.1-3:5	chr7	 56550668	 56551563	-	lnc-RP4-725G10.1.1-3	lnc-RP4-725G10.1.1-3:5	XLOC_006456	linc-LOC389493-1	NA	NA	NA	inter
CUST_15816_PI429285431	2.702671	A	3.175666	P	0.720467371364269	0	lncRNA	17506-1_{1..1536}	lnc-CD83-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD83-4:1	chr6	 14513206	 14514741	+	lnc-CD83-4	lnc-CD83-4:1	XLOC_005182	linc-JARID2-2	NA	NA	NA	inter
CUST_30326_PI429285431	1.6990137	A	1.8616717	A	0.893377608074964	0	lncRNA	32102-1_{1..355}	n335240|AY545554|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255368|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255368|0.7608350|-0.1428310	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335240|AY545554|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255368|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255368|0.7608350|-0.1428310	chr17	  8166236	  8166590	+	NA	NA	NA	NA	PFAS	NA	chr17:8156236-8173809	inner
CUST_47010_PI429285431	5.13562	P	4.456233	P	1.60145915184839	0	lncRNA	51106-1_{1..3000}	"gi|213512758|ref|NR_024484.1| Homo sapiens uncharacterized LOC400657 (LOC400657), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|213512758|ref|NR_024484.1| Homo sapiens uncharacterized LOC400657 (LOC400657), non-coding RNA"	Chr18	 72259010	 72262009	-	400657	NR_024484.1	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	inter
LNCA_21_P0004295	0.8929889	A	0.89459044	A	0.998890513000771	0	lncRNA	ENST00000515533	NA	NA	NA	NA	CDC42SE2	CDC42 small effector 2	ENST00000515533	NA	GO:0005515|GO:0006909|GO:0005886|GO:0008360|GO:0005730|GO:0001891|GO:0005634|GO:0009966|GO:0042995|GO:0043231|GO:0005737|GO:0005198|GO:0005856	"BROAD Institute lincRNA (XLOC_004548), lincRNA [TCONS_00010090]"	chr5:130588800-130590824	hs|5q23.3	Agilent_HUMAN_G3V2	ENST00000515533	ENST00000515533	chr5	130588800	130590824	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29491_PI429285431	1.6742041	A	0.9221523	A	1.68418637688345	0	lncRNA	31249-1_{1..529}	n332918|AF086431|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067310|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067310|-1.2259300|-0.3471052	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332918|AF086431|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067310|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067310|-1.2259300|-0.3471052	chr1	 24865206	 24865734	+	NA	NA	NA	NA	RCAN3	"hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.00chr1:24855206-24862428"	NA	inter
CUST_40751_PI429285431	10.03687	P	9.790185	P	1.18647771221351	0	lncRNA	41479-1_{1..3000}	n410467|NR_037611|lncRNA|Homosapiens||RefGeneNoncode|NR_037611||6.6494100|-0.0834038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410467|NR_037611|lncRNA|Homosapiens||RefGeneNoncode|NR_037611||6.6494100|-0.0834038	chr22	 19704742	 19707741	+	NA	NA	NA	NA	5-Sep	NA	chr22:19701987-19710845	inter
CUST_50640_PI429285431	1.3261056	A	1.6829698	A	0.780859991020538	0	lncRNA	54320-1_{1..421}	hg19_lincRNAsTranscripts_TCONS_l2_00003443 range=chr10:27255783-27258698 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003443 range=chr10:27255783-27258698 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 27255783	 27256203	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48015_PI429285431	8.829122	P	8.874727	P	0.968883426546976	0	lncRNA	51898-1_{1..1141}	"gi|410173443|ref|XR_172221.1| PREDICTED: Homo sapiens uncharacterized LOC100134391 (LOC100134391), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|410173443|ref|XR_172221.1| PREDICTED: Homo sapiens uncharacterized LOC100134391 (LOC100134391), misc_RNA"	NA	NA	NA	NA	NA	XR_172221.1	NA	NA	NA	NA	NA	Unknown
CUST_16172_PI429285431	0.89539206	A	0.903031	A	0.99471908360233	0	lncRNA	17878-1_{1..1025}	lnc-EGR3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EGR3-1:2	chr8	 22537272	 22538296	-	lnc-EGR3-1	lnc-EGR3-1:2	XLOC_007024	linc-BIN3	EGR3	NA	chr8:22545174-22547772	inter
CUST_39633_PI429285431	1.2589558	A	1.4036189	A	0.904590594056396	0	lncRNA	40572-1_{1..289}	n405209|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000041914||-0.7939410|-0.3443604	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405209|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000041914||-0.7939410|-0.3443604	chr6	114595333	114595621	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10_PI429285431	0.909426	A	0.89737344	A	1.00838919167469	0	lncRNA	9-1_{1..2162}	"transcript_id ""ENST00000505663.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000505663.1"" | genecode_v17"	chr5	134571924	134574085	-	ENSG00000249647.2	ENST00000505663.1	CTC-349C3.2	CTC-349C3.2-001	NA	NA	NA	inter
CUST_7253_PI429285431	0.8813956	A	0.8816509	A	0.999823055181384	0	lncRNA	7991-1_{1..355}	"transcript_id ""ENST00000365490.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000365490.1"" | genecode_v17"	chr8	102150187	102150541	+	ENSG00000202360.1	ENST00000365490.1	RN7SKP249	RN7SKP249-201	NA	NA	NA	inter
CUST_22843_PI429285431	0.89121914	A	0.9770225	A	0.942259695584084	0	lncRNA	24422-1_{1..542}	lnc-UBLCP1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBLCP1-6:1	chr5	158413886	158414427	+	lnc-UBLCP1-6	lnc-UBLCP1-6:1	ENSG00000253456.1	CTD-2363C16.2	EBF1	NA	chr5:158403886-158424207	inner
CUST_24054_PI429285431	4.4909387	P	4.5386114	P	0.967495797656932	0	lncRNA	25606-1_{1..388}	lnc-ACSBG1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACSBG1-1:2	chr15	 78556214	 78556601	-	lnc-ACSBG1-1	lnc-ACSBG1-1:2	ENSG00000259708.1	RP11-762H8.3	DNAJA4	NA	chr15:78556487-78566329	inter
CUST_15790_PI429285431	0.9153061	A	1.1663244	A	0.840303093262605	0	lncRNA	17480-1_{1..540}	lnc-SSTR4-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SSTR4-6:1	chr20	 22371351	 22371890	+	lnc-SSTR4-6	lnc-SSTR4-6:1	XLOC_013484	linc-SSTR4-5	NA	NA	NA	inter
CUST_44617_PI429285431	1.1478347	A	1.2692201	A	0.919304431350425	0	lncRNA	49186-2_{3001..5494}	"gi|384381493|ref|NR_047578.1| Homo sapiens glutamate receptor, ionotropic, AMPA 1 (GRIA1), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384381493|ref|NR_047578.1| Homo sapiens glutamate receptor, ionotropic, AMPA 1 (GRIA1), transcript variant 8, non-coding RNA"	Chr5	152873084	152875577	+	2890	NR_047578.1	NA	NA	NA	NA	NA	inter
CUST_30821_PI429285431	5.025917	P	4.7454515	P	1.21458671974308	0	lncRNA	32608-1_{1..223}	n336750|Z77833|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328125|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328125|0.2473370|-0.2509225	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336750|Z77833|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328125|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328125|0.2473370|-0.2509225	chr7	142021220	142021442	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24468_PI429285431	6.4529066	P	6.4431214	P	1.00680563760466	0	lncRNA	26021-1_{1..285}	lnc-IL25-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL25-1:1	chr14	 23826113	 23826397	+	lnc-IL25-1	lnc-IL25-1:1	ENSG00000259018.1	RP11-124D2.3	EFS	NA	chr14:23825611-23834842	inner
CUST_26870_PI429285431	0.9088717	A	1.0076898	A	0.933797673946326	0	lncRNA	28387-1_{1..2300}	n323945|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054937|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054937|-0.2629910|-0.1790951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323945|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054937|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054937|-0.2629910|-0.1790951	chr9	135880437	135882736	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34409_PI429285431	0.8823973	A	0.88286954	A	0.999672721742669	0	lncRNA	35891-1_{1..3000}	n341280|BC044852|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3749|NULL|0.0356452|-0.2630828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341280|BC044852|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3749|NULL|0.0356452|-0.2630828	chr7	 97752599	 97755598	-	NA	NA	NA	NA	LMTK2	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20chr7:97742599-97765814"	NA	inner
CUST_50157_PI429285431	0.8887588	A	0.99249816	A	0.930617769673738	0	lncRNA	53882-1_{1..257}	hg19_lincRNAsTranscripts_TCONS_l2_00028603 range=chr9:3602552-3651990 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028603 range=chr9:3602552-3651990 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	  3602552	  3602808	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21802_PI429285431	3.8738778	P	3.6463368	P	1.17083761463379	0	lncRNA	23412-1_{1..936}	lnc-CLCN6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLCN6-1:2	chr1	 11907634	 11908569	+	lnc-CLCN6-1	lnc-CLCN6-1:2	ENSG00000242349.1	NPPA-AS1	CLCN6	"hg19_refFlat_NPPA:range=chr1:11906066-119077415'pad=0,hg19_refFlat_NPPA:range=chr1:11906066-119077415'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70chr1:11897634-11903201"	NA	inner
CUST_220_PI429285431	1.3270438	A	0.8894129	A	1.3543784281339	0	lncRNA	210-1_{1..654}	"transcript_id ""ENST00000453688.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453688.1"" | genecode_v17"	chr1	 44516786	 44517439	+	ENSG00000230615.1	ENST00000453688.1	RP5-1198O20.4	RP5-1198O20.4-002	NA	NA	NA	inter
CUST_5745_PI429285431	3.698308	P	4.0675383	P	0.774195431781567	0	lncRNA	5670-1_{1..951}	"transcript_id ""ENST00000418821.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418821.2"" | genecode_v17"	chr17	 15709555	 15710505	-	ENSG00000237057.2	ENST00000418821.2	AC015922.6	AC015922.6-001	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30"	NA	inter
LNCA_21_P0007415	1.6746483	A	1.279265	A	1.31529216496918	0	lncRNA	TCONS_00019790	NA	NA	NA	NA	XLOC_009588	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009588), lincRNA [TCONS_00019790]"	chr11:124770749-124770690	hs|11q24.2	Agilent_HUMAN_G3V2	TCONS_00019790	TCONS_00019790	chr11	124770690	124770749	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15804_PI429285431	7.0052395	P	7.29644	P	0.817221746378518	0	lncRNA	17494-1_{1..565}	lnc-WNT7A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WNT7A-1:1	chr3	 13695301	 13695865	-	lnc-WNT7A-1	lnc-WNT7A-1:1	XLOC_003052	linc-NUP210-2	NA	NA	NA	inter
LNCA_21_P0004125	0.89772165	A	0.8944594	A	1.00226377787441	0	lncRNA	ENST00000512599	NA	NA	NA	NA	XLOC_004813	NA	ENST00000512599	NA	NA	"BROAD Institute lincRNA (XLOC_004813), lincRNA [TCONS_00009658]"	chr5:50154687-50154628	hs|5q11.1	Agilent_HUMAN_G3V2	ENST00000512599	ENST00000512599	chr5	 50154628	 50154687	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28600_PI429285431	3.2262182	P	3.525509	P	0.812651781530195	0	lncRNA	30281-1_{1..537}	n325962|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048170|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048170|-1.3526100|-0.4209590	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325962|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048170|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048170|-1.3526100|-0.4209590	chr10	 61018913	 61019449	+	NA	NA	NA	NA	FAM13C	NA	chr10:61008913-61051012	inner
CUST_34914_PI429285431	3.8331244	P	4.1098347	P	0.825471150389475	0	lncRNA	36337-1_{1..3000}	n341833|AK128448|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4312|NULL|-0.9415390|-0.2333510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341833|AK128448|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4312|NULL|-0.9415390|-0.2333510	chr6	 37535491	 37538490	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37788_PI429285431	5.1845946	P	5.26735	P	0.944252497736671	0	lncRNA	38883-2_{3001..6000}	n346297|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1847|NULL|-1.3300400|-0.2943890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346297|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1847|NULL|-1.3300400|-0.2943890	chr20	 39620034	 39623033	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80"	NA	inter
CUST_26847_PI429285431	0.90363127	A	1.0632668	A	0.895251210886338	0	lncRNA	28361-1_{1..1184}	n323919|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055663|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055663|-1.2831700|-0.3771074	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323919|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055663|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055663|-1.2831700|-0.3771074	chrX	  4555240	  4556423	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008924	7.061344	P	7.144182	P	0.944198437092268	0	lncRNA	TCONS_00024376	NA	NA	NA	NA	XLOC_011699	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011699), lincRNA [TCONS_00024376]"	chr16:34477788-34477847	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_00024376	TCONS_00024376	chr16	 34477788	 34477847	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7126_PI429285431	0.89042705	A	1.3671252	A	0.718620426963906	0	lncRNA	7063-1_{1..921}	"transcript_id ""ENST00000420160.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420160.1"" | genecode_v17"	chrX	152435330	152436250	-	ENSG00000237736.1	ENST00000420160.1	U82670.4	U82670.4-001	NA	NA	NA	inter
CUST_16372_PI429285431	5.463336	P	4.922048	P	1.45527116516617	0	lncRNA	18069-1_{1..537}	lnc-ZNF705D-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF705D-3:5	chr8	 12302265	 12302801	+	lnc-ZNF705D-3	lnc-ZNF705D-3:5	XLOC_006721	linc-C8orf79-2	LOC100127885	NA	chr8:12295164-12312380	inter
LNCA_19_P00803039	0.9005204	A	0.8971352	A	1.00234919688471	0	lncRNA	XR_110179	XR_110179	XR_110179	NA	Hs.729388	LOC100507429	uncharacterized LOC100507429	NA	THC2504912	NA	"PREDICTED: Homo sapiens hypothetical LOC100507429 (LOC100507429), miscRNA [XR_110179]"	chr6:138145112-138145053	hs|6q23.3	Agilent_HUMAN_G3V2	XR_110179	XR_110179	chr6	138145053	138145112	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32128_PI429285431	0.89040726	A	0.89066464	A	0.999821613691397	0	lncRNA	33828-1_{1..2474}	n338695|BC043238|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1115|NULL|-1.0188700|-0.2865448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338695|BC043238|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1115|NULL|-1.0188700|-0.2865448	chr2	 23281094	 23283567	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7025_PI429285431	0.88968444	A	0.8936477	A	0.99725664739327	0	lncRNA	6972-1_{1..696}	"transcript_id ""ENST00000448948.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448948.1"" | genecode_v17"	chrX	 13973512	 13974207	+	ENSG00000233535.1	ENST00000448948.1	RP1-122K4.2	RP1-122K4.2-001	NA	NA	NA	inter
CUST_29092_PI429285431	1.2683907	A	1.5668688	A	0.81310969407541	0	lncRNA	30825-1_{1..2344}	n326588|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023196|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023196|-1.0327700|-0.3041055	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326588|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023196|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023196|-1.0327700|-0.3041055	chr1	 60897890	 60900233	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23451_PI429285431	4.889189	P	4.9709687	P	0.944891315191426	0	lncRNA	25019-1_{1..876}	lnc-GLUD1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-GLUD1-4:1	chr10	 89101999	 89102874	-	lnc-GLUD1-4	lnc-GLUD1-4:1	ENSG00000223482.1	RP11-322M19.1	NA	NA	NA	inter
CUST_41684_PI429285431	7.4237423	P	7.772431	P	0.785297549320623	0	lncRNA	43149-1_{1..95}	ENST00000384847 ncrna:miRNA chromosome:GRCh37:16:820183:820277:1 gene:ENSG00000207579 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384847 ncrna:miRNA chromosome:GRCh37:16:820183:820277:1 gene:ENSG00000207579 gene_biotype:miRNA transcript_biotype:miRNA	chr16	   820183	   820277	+	ENSG00000207579	ENST00000384847	NA	NA	MSLNL	NA	chr16:819428-830277	inter
CUST_24922_PI429285431	1.769932	A	2.156307	A	0.765049499600441	0	lncRNA	26463-1_{1..472}	lnc-KIF3A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIF3A-1:1	chr5	131999871	132000342	-	lnc-KIF3A-1	lnc-KIF3A-1:1	ENSG00000223442.1	AC004041.2	IL4	"hg19_refFlat_RAD50:range=chr5:131893017-1319780565'pad=0,hg19_refFlat_RAD50:range=chr5:131893017-1319780565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60chr5:132009373-132009964"	NA	inter
CUST_37395_PI429285431	8.37702	P	8.562471	P	0.879374132348781	0	lncRNA	38500-1_{1..447}	n345848|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1397|NULL|-1.5079100|-0.0914658	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345848|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1397|NULL|-1.5079100|-0.0914658	chr14	103018649	103019095	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51944_PI429285431	1.2785978	A	0.9191165	A	1.28296454340639	0	lncRNA	55486-1_{1..1431}	hg19_lincRNAsTranscripts_TCONS_l2_00016215 range=chr20:25731491-25734528 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016215 range=chr20:25731491-25734528 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 25731491	 25732921	+	NA	NA	NA	NA	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70"	NA	inter
CUST_50855_PI429285431	0.88874185	A	0.91959745	A	0.978839617995198	0	lncRNA	54499-1_{1..747}	hg19_lincRNAsTranscripts_TCONS_l2_00004711 range=chr11:88160044-88161284 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004711 range=chr11:88160044-88161284 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 88160044	 88160790	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43256_PI429285431	1.0463766	A	0.9034088	A	1.10417420244949	0	lncRNA	48074-1_{1..581}	ENST00000591836 havana:sense_intronic chromosome:GRCh37:19:56888073:56888653:-1 gene:ENSG00000267776 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000591836 havana:sense_intronic chromosome:GRCh37:19:56888073:56888653:-1 gene:ENSG00000267776 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 56888073	 56888653	-	ENSG00000267776	ENST00000591836	NA	NA	ZNF582	"hg19_refFlat_ZNF267:range=chr16:31895912-319278025'pad=0,hg19_refFlat_ZNF267:range=chr16:31895912-319278025'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.70;hg19_refFlat_ZNF267:range=chr16:31885288-319278025'pad=0,hg19_refFlat_ZNF267:range=chr16:31885288-319278025'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.70chr19:56894648-56898653"	NA	inter
CUST_46309_PI429285431	7.2284923	P	6.5057573	P	1.65030765406724	0	lncRNA	50540-1_{1..1880}	"gi|387912568|ref|NR_049739.1| Homo sapiens methyltransferase like 21D (METTL21D), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387912568|ref|NR_049739.1| Homo sapiens methyltransferase like 21D (METTL21D), transcript variant 4, non-coding RNA"	Chr14	 50575350	 50577229	-	79609	NR_049739.1	NA	NA	NA	NA	NA	inter
CUST_8545_PI429285431	0.9223136	A	1.2894336	A	0.775328713635442	0	lncRNA	10104-1_{1..3000}	lnc-TEAD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TEAD2-1:1	chr19	 49890613	 49893612	-	lnc-TEAD2-1	lnc-TEAD2-1:1	ENSG00000249897	ENST00000505462	CCDC155	"hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70chr19:49891475-49901338"	NA	inter
CUST_19169_PI429285431	10.106097	P	9.525695	P	1.49526583919062	0	lncRNA	20838-1_{1..436}	lnc-RP11-24B21.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RP11-24B21.1.1-1:1	chr12	 92538836	 92539271	-	lnc-RP11-24B21.1.1-1	lnc-RP11-24B21.1.1-1:1	ENSG00000257922.1	RP11-796E2.3	BTG1	NA	chr12:92534054-92539673	inner
CUST_26617_PI429285431	0.9310651	A	1.9772787	A	0.484237394938772	0	lncRNA	28120-1_{1..829}	lnc-SRGAP3-1:23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRGAP3-1:23	chr3	  9404524	  9405352	-	lnc-SRGAP3-1	lnc-SRGAP3-1:23	ENSG00000254485.1	RP11-380O24.1	THUMPD3	NA	chr3:9404717-9414713	inter
CUST_51335_PI429285431	1.7798374	A	0.8932247	A	1.84883016022995	0	lncRNA	54935-5_{12001..12464}	hg19_lincRNAsTranscripts_TCONS_l2_00009133 range=chr15:62488223-62516293 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009133 range=chr15:62488223-62516293 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 62500223	 62500686	-	NA	NA	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0,hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70"	NA	inter
LNCA_21_P0002056	0.9113285	A	0.92464054	A	0.990815237009556	0	lncRNA	ENST00000423539	NA	NA	NA	NA	XLOC_002122	NA	ENST00000423539	NA	NA	"BROAD Institute lincRNA (XLOC_002122), lincRNA [TCONS_00003301]"	chr2:64313566-64313507	hs|2p14	Agilent_HUMAN_G3V2	ENST00000423539	ENST00000423539	chr2	 64313507	 64313566	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014743	2.248245	A	0.9242877	A	2.50351881860208	0	lncRNA	XR_132475	XR_132475	XR_132475	NA	NA	LOC100652867	uncharacterized LOC100652867	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652867 (LOC100652867), miscRNA [XR_132475]"	chr1:203277072-203277013	hs|1q32.1	Agilent_HUMAN_G3V2	XR_132475	XR_132475	chr1	203277013	203277072	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001879	3.8610117	P	2.2341375	A	3.08843121586178	0	lncRNA	AK123865	NA	AK123865	NA	Hs.728829	MOB1A	MOB kinase activator 1A	NA	NA	GO:0005515|GO:0035329|GO:0046872	"BROAD Institute lincRNA (XLOC_001532), lincRNA [TCONS_00002935]"	chr2:74380947-74381006	hs|2p13.1	Agilent_HUMAN_G3V2	AK123865	AK123865	chr2	 74380947	 74381006	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25334_PI429285431	2.0954673	A	2.1473625	A	0.964668257301272	0	lncRNA	26865-1_{1..558}	lnc-PRMT8-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRMT8-2:2	chr12	  4019050	  4019607	+	lnc-PRMT8-2	lnc-PRMT8-2:2	ENSG00000256862.1	RP11-664D1.1	NA	NA	NA	inter
CUST_25709_PI429285431	5.212843	P	5.5494194	P	0.791918352544855	0	lncRNA	27237-1_{1..368}	lnc-E2F7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-E2F7-1:2	chr12	 77622316	 77622683	-	lnc-E2F7-1	lnc-E2F7-1:2	ENSG00000257677.1	RP1-81P11.1	NA	NA	NA	inter
CUST_12547_PI429285431	2.253737	A	2.0779152	A	1.12960767813659	0	lncRNA	14158-1_{1..522}	lnc-PCDH20-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH20-4:1	chr13	 63370693	 63371214	-	lnc-PCDH20-4	lnc-PCDH20-4:1	XLOC_010638	linc-PCDH20-4	NA	NA	NA	inter
CUST_13180_PI429285431	0.9032202	A	0.9171426	A	0.990396142147138	0	lncRNA	14807-1_{1..1352}	lnc-AC068473.1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC068473.1-2:6	chr18	 76738463	 76739814	-	lnc-AC068473.1-2	lnc-AC068473.1-2:6	XLOC_012900	linc-MBP-4	SALL3	NA	chr18:76740275-76748579	inter
LNCA_21_P0005909	4.749419	P	5.211979	P	0.725697396815892	0	lncRNA	TCONS_00015176	NA	NA	NA	NA	XLOC_007223	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007223), lincRNA [TCONS_00015176]"	chr8:131536111-131536052	hs|8q24.22	Agilent_HUMAN_G3V2	TCONS_00015176	TCONS_00015176	chr8	131536052	131536111	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27002_PI429285431	1.0785286	A	1.7578732	A	0.624448890075094	0	lncRNA	28530-1_{1..482}	n324104|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000128848|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000128848|-0.2323760|-0.3309293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324104|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000128848|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000128848|-0.2323760|-0.3309293	chr9	 41519582	 41520063	-	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00"	NA	inter
CUST_3457_PI429285431	0.8851199	A	0.88611424	A	0.999311013492763	0	lncRNA	3428-1_{1..792}	"transcript_id ""ENST00000586399.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586399.1"" | genecode_v17"	chr9	 84891964	 84892755	+	ENSG00000228430.4	ENST00000586399.1	RP11-15B24.5	RP11-15B24.5-015	NA	NA	NA	inter
CUST_34557_PI429285431	0.9284789	A	0.9137964	A	1.01022909663053	0	lncRNA	36017-1_{1..2672}	n341438|AK055476|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3908|NULL|-1.0869200|-0.2984038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341438|AK055476|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3908|NULL|-1.0869200|-0.2984038	chr13	111944866	111947537	+	NA	NA	NA	NA	ARHGEF7	NA	chr13:111934866-111957538	inner
CUST_20262_PI429285431	1.2418054	A	1.357224	A	0.923114428915191	0	lncRNA	21905-1_{1..419}	lnc-DTNB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DTNB-1:1	chr2	 25598458	 25598876	-	lnc-DTNB-1	lnc-DTNB-1:1	ENSG00000235072.1	AC012074.2	DTNB	NA	chr2:25600112-25608714	inter
CUST_39587_PI429285431	3.9146452	P	4.391491	P	0.71854688482666	0	lncRNA	40531-1_{1..3000}	n387590|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jdv.1||-0.9852330|-0.2407236	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387590|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jdv.1||-0.9852330|-0.2407236	chr6	  1198049	  1201048	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14923_PI429285431	1.8892623	A	2.5631018	A	0.626836241950133	0	lncRNA	16585-1_{1..255}	lnc-HIST3H3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HIST3H3-1:1	chr1	228629458	228629712	-	lnc-HIST3H3-1	lnc-HIST3H3-1:1	XLOC_001241	linc-HIST3H3	NA	NA	NA	inter
CUST_7895_PI429285431	2.093817	A	2.7323623	A	0.642360327882495	0	lncRNA	9512-1_{1..3000}	lnc-GRHL2-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-GRHL2-9:1	chr8	102025826	102028825	+	lnc-GRHL2-9	lnc-GRHL2-9:1	ENSG00000248638	ENST00000512945	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10"	NA	inter
CUST_32426_PI429285431	5.436695	P	5.8588343	P	0.746317127219002	0	lncRNA	34101-1_{1..1412}	n339020|BC037197|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1449|NULL|-0.3654680|-0.2691128	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339020|BC037197|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1449|NULL|-0.3654680|-0.2691128	chr2	175410027	175411438	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45627_PI429285431	6.8572044	P	8.007409	P	0.450561329106847	0	lncRNA	50010-1_{1..2046}	"gi|212286168|ref|NR_024422.1| Homo sapiens ZNF503 antisense RNA 2 (ZNF503-AS2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|212286168|ref|NR_024422.1| Homo sapiens ZNF503 antisense RNA 2 (ZNF503-AS2), transcript variant 2, non-coding RNA"	Chr10	 77163514	 77165559	+	100131213	NR_024422.1	NA	NA	NA	NA	NA	inter
CUST_29773_PI429285431	6.9530067	P	7.129608	P	0.884784918744246	0	lncRNA	31536-1_{1..491}	n333470|BC024752|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090968|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090968|-0.8977550|-0.2005393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333470|BC024752|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090968|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090968|-0.8977550|-0.2005393	chr16	 70695092	 70695582	-	NA	NA	NA	NA	IL34	NA	chr16:70685092-70694585	inner
CUST_9448_PI429285431	1.0277255	A	0.9820752	A	1.03214831904421	0	lncRNA	10953-2_{3001..3851}	lnc-C15orf41-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf41-6:1	chr15	 36474615	 36475465	+	lnc-C15orf41-6	lnc-C15orf41-6:1	XLOC_011210	linc-C15orf41-3	NA	NA	NA	inter
LNCA_21_P0004346	0.89460707	A	1.3800818	A	0.71426199774275	0	lncRNA	TCONS_00010217	NA	NA	NA	NA	XLOC_004685	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004685), lincRNA [TCONS_00010217]"	chr5:180298302-180298361	hs|5q35.3	Agilent_HUMAN_G3V2	TCONS_00010217	TCONS_00010217	chr5	180298302	180298361	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34905_PI429285431	1.5486885	A	1.9029195	A	0.782286514339252	0	lncRNA	36329-1_{1..2326}	n341823|AK097773|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4302|NULL|-1.1444000|-0.2247573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341823|AK097773|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4302|NULL|-1.1444000|-0.2247573	chr6	 36166403	 36168728	-	NA	NA	NA	NA	BRPF3	"hg19_refFlat_BRPF3:range=chr6:36168100-361983865'pad=0,hg19_refFlat_BRPF3:range=chr6:36168100-361983865'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10chr6:36164550-36178729"	NA	inner
CUST_13335_PI429285431	0.9317585	A	0.9286676	A	1.00214474530332	0	lncRNA	14971-1_{1..843}	lnc-GRAMD3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRAMD3-1:2	chr5	125531150	125531992	+	lnc-GRAMD3-1	lnc-GRAMD3-1:2	XLOC_004539	linc-GRAMD3-1	NA	NA	NA	inter
CUST_28936_PI429285431	1.0526028	A	0.9908779	A	1.04371288827319	0	lncRNA	30655-1_{1..649}	n326363|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058349|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058349|-0.4884950|-0.1871311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326363|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058349|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058349|-0.4884950|-0.1871311	chr1	156368457	156369105	-	NA	NA	NA	NA	C1orf61	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00chr1:156374055-156387044"	NA	inner
CUST_32222_PI429285431	2.1671321	A	2.1939425	A	0.981588056371964	0	lncRNA	33914-2_{3001..3916}	n338795|BC043442|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1218|NULL|-1.2559600|-0.3376849	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n338795|BC043442|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1218|NULL|-1.2559600|-0.3376849	chr13	 90715500	 90716415	-	NA	NA	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_35067_PI429285431	2.05524	A	1.9513243	A	1.07468637461628	0	lncRNA	36477-1_{1..1137}	n342018|BC007821|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4499|NULL|-1.1470300|-0.2072027	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342018|BC007821|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4499|NULL|-1.1470300|-0.2072027	chr12	110171129	110172265	-	NA	NA	NA	NA	TRPV4	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50chr12:110220892-110221285"	NA	inter
CUST_51510_PI429285431	7.264807	P	7.4143705	P	0.901523185074313	0	lncRNA	55085-1_{1..1284}	hg19_lincRNAsTranscripts_TCONS_l2_00010363 range=chr16:89262175-89264450 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010363 range=chr16:89262175-89264450 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 89262175	 89263458	-	NA	NA	NA	NA	CDH15	NA	chr16:89252175-89261900	inner
CUST_1269_PI429285431	0.88357896	A	0.8817122	A	1.00129477693159	0	lncRNA	1261-1_{1..561}	"transcript_id ""ENST00000455068.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455068.1"" | genecode_v17"	chr2	237642025	237642585	+	ENSG00000232328.1	ENST00000455068.1	AC011286.1	AC011286.1-001	NA	NA	NA	inter
LNCA_21_P0005183	1.8516644	A	1.5783044	A	1.20861939617035	0	lncRNA	TCONS_00012830	NA	NA	NA	NA	XLOC_005935	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005935), lincRNA [TCONS_00012830]"	chr6:169557326-169557267	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012830	TCONS_00012830	chr6	169557267	169557326	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45668_PI429285431	3.4287457	P	3.6840665	P	0.837800819210366	0	lncRNA	50044-1_{1..1003}	"gi|223029486|ref|NR_026762.1| Homo sapiens long intergenic non-protein coding RNA 263 (LINC00263), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223029486|ref|NR_026762.1| Homo sapiens long intergenic non-protein coding RNA 263 (LINC00263), non-coding RNA"	Chr10	102133333	102134335	+	90271	NR_026762.1	NA	NA	NA	NA	NA	inter
CUST_24393_PI429285431	4.710029	P	5.136281	P	0.74419262580456	0	lncRNA	25946-1_{1..634}	lnc-MAN2C1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAN2C1-2:1	chr15	 75525848	 75526481	-	lnc-MAN2C1-2	lnc-MAN2C1-2:1	ENSG00000260660.1	RP11-69H7.2	NA	NA	NA	inter
CUST_6272_PI429285431	2.759819	A	3.2878113	P	0.693519186029502	0	lncRNA	6196-1_{1..661}	"transcript_id ""ENST00000581626.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581626.1"" | genecode_v17"	chr18	 75334508	 75335168	+	ENSG00000264693.1	ENST00000581626.1	RP11-63N3.1	RP11-63N3.1-001	NA	NA	NA	inter
CUST_7674_PI429285431	5.036498	P	4.162154	P	1.83317434415446	0	lncRNA	9307-1_{1..629}	lnc-WDR74-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR74-1:3	chr11	 62623337	 62623965	-	lnc-WDR74-1	lnc-WDR74-1:3	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62633353	inter
CUST_28130_PI429285431	0.88393927	A	1.2489722	A	0.776451152039832	0	lncRNA	29754-1_{1..546}	n325405|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323745|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323745|-1.1951000|-0.2929358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325405|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323745|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323745|-1.1951000|-0.2929358	chr2	 16567924	 16568469	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1063_PI429285431	0.904187	A	1.1667066	A	0.833630749904871	0	lncRNA	1053-1_{1..604}	"transcript_id ""ENST00000435352.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435352.1"" | genecode_v17"	chr2	127066087	127066690	+	ENSG00000235774.1	ENST00000435352.1	AC023347.1	AC023347.1-001	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90"	NA	inter
CUST_7864_PI429285431	0.8977133	A	0.9023327	A	0.996803196606234	0	lncRNA	9487-1_{1..3000}	lnc-AC009336.1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AC009336.1-2:6	chr2	177042439	177045438	-	lnc-AC009336.1-2	lnc-AC009336.1-2:6	ENSG00000224189	AC009336.23	HOXD3	NA	chr2:177032439-177037826	inter
CUST_2812_PI429285431	10.569431	P	10.34127	P	1.17134089169873	0	lncRNA	2795-1_{1..731}	"transcript_id ""ENST00000579383.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579383.1"" | genecode_v17"	chr7	 45022625	 45023355	-	ENSG00000232956.3	ENST00000579383.1	SNHG15	SNHG15-007	MYO1G	NA	chr7:45012625-45018704	inter
CUST_19517_PI429285431	2.584429	A	3.0720167	A	0.7132166558839	0	lncRNA	21173-1_{1..1550}	lnc-CDK5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK5-2:2	chr7	150720961	150722510	-	lnc-CDK5-2	lnc-CDK5-2:2	ENSG00000181652.11	ATG9B	ABCB8	NA	chr7:150725510-150731586	inter
CUST_5538_PI429285431	4.9475503	P	5.211129	P	0.833018995994106	0	lncRNA	5468-1_{1..1171}	"transcript_id ""ENST00000567534.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567534.1"" | genecode_v17"	chr16	 50918120	 50919290	+	ENSG00000261241.1	ENST00000567534.1	RP11-883G14.1	RP11-883G14.1-002	NA	NA	NA	inter
CUST_49168_PI429285431	0.9175485	A	1.3206891	A	0.756210297446706	0	lncRNA	52994-1_{1..316}	hg19_lincRNAsTranscripts_TCONS_l2_00021309 range=chr4:139219649-139233505 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021309 range=chr4:139219649-139233505 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	139219649	139219964	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014756	0.89795154	A	0.8947463	A	1.00222417288	0	lncRNA	XR_132498	XR_132498	XR_132498	NA	Hs.689354	LOC100508227	uncharacterized LOC100508227	NA	THC2600881	NA	"PREDICTED: Homo sapiens hypothetical LOC100508227 (LOC100508227), miscRNA [XR_132498]"	chr3:186650684-186650743	hs|3q27.3	Agilent_HUMAN_G3V2	XR_132498	XR_132498	chr3	186650684	186650743	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21978_PI429285431	4.322229	P	4.9921436	P	0.628543892670392	0	lncRNA	23586-1_{1..939}	lnc-C8orf39-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C8orf39-2:1	chr8	 94732997	 94733935	+	lnc-C8orf39-2	lnc-C8orf39-2:1	ENSG00000253854.1	RP11-10N23.2	FAM92A1	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-61.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.80chr8:94722997-94740674"	NA	inner
LNCA_33_P3352053	7.910959	P	7.8003306	P	1.07969842232073	0	lncRNA	ENST00000379317	XR_132470	XR_132470	NA	Hs.672618	NA	NA	ENST00000379317	THC2483050	NA	"PREDICTED: Homo sapiens hypothetical LOC100506376 (LOC100506376), miscRNA [XR_132470]"	chr1:1108495-1108436	hs|1p36.33	Agilent_HUMAN_G3V2	ENST00000379317	ENST00000379317	chr1	  1108436	  1108495	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45385_PI429285431	0.89279205	A	0.89181554	A	1.0006770942782	0	lncRNA	49817-1_{1..1362}	"gi|374088145|ref|NR_046163.1| Homo sapiens MIRLET7D host gene (non-protein coding) (MIRLET7DHG), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|374088145|ref|NR_046163.1| Homo sapiens MIRLET7D host gene (non-protein coding) (MIRLET7DHG), transcript variant 1, non-coding RNA"	Chr9	 96938851	 96940212	-	158257	NR_046163.1	NA	NA	NA	NA	NA	inter
CUST_2786_PI429285431	1.7583579	A	0.91202635	A	1.79792339182238	0	lncRNA	2770-1_{1..570}	"transcript_id ""ENST00000430426.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430426.1"" | genecode_v17"	chr7	 26591515	 26592084	+	ENSG00000233760.1	ENST00000430426.1	AC004947.2	AC004947.2-002	NA	NA	NA	inter
CUST_5406_PI429285431	5.307348	P	5.6869025	P	0.768674918560856	0	lncRNA	5340-1_{1..3000}	"transcript_id ""ENST00000571152.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000571152.1"" | genecode_v17"	chr16	  3040195	  3043194	+	ENSG00000262152.2	ENST00000571152.1	LINC00514	LINC00514-002	PKMYT1	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-54.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-57.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-60.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr16:3030195-3030540"	NA	inter
CUST_2377_PI429285431	5.0127993	P	5.7742443	P	0.589905187055765	0	lncRNA	2370-1_{1..564}	"transcript_id ""ENST00000502421.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502421.1"" | genecode_v17"	chr5	136070616	136071179	+	ENSG00000250284.1	ENST00000502421.1	CTB-1I21.1	CTB-1I21.1-001	NA	NA	NA	inter
LNCA_21_P0013546	0.9004406	A	0.8971492	A	1.00228402905949	0	lncRNA	TCONS_l2_00028602	NA	NA	NA	NA	XLOC_l2_014694	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014694), lincRNA [TCONS_l2_00028602]"	chr9:3602573-3602632	hs|9p24.2	Agilent_HUMAN_G3V2	TCONS_l2_00028602	TCONS_l2_00028602	chr9	  3602573	  3602632	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23622_PI429285431	2.4036994	A	2.0300255	A	1.29564807013774	0	lncRNA	25189-1_{1..184}	lnc-C10orf125-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf125-1:1	chr10	135164091	135164274	-	lnc-C10orf125-1	lnc-C10orf125-1:1	ENSG00000226699.1	RP11-122K13.7	C10orf125	NA	chr10:135168658-135171529	inner
CUST_18030_PI429285431	2.4047399	A	1.238417	A	2.24438923781991	0	lncRNA	19765-1_{1..394}	lnc-WDR60-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR60-6:2	chr7	158383598	158383991	+	lnc-WDR60-6	lnc-WDR60-6:2	XLOC_006317	linc-WDR60-2	PTPRN2	NA	chr7:158373598-158380482	inter
CUST_20228_PI429285431	0.9199013	A	0.90597177	A	1.00970197640677	0	lncRNA	21872-1_{1..3000}	lnc-AC005481.5.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC005481.5.1-2:1	chr7	157820325	157823324	+	lnc-AC005481.5.1-2	lnc-AC005481.5.1-2:1	ENSG00000231980.1	AC011899.10	PTPRN2	NA	chr7:157810325-157833820	inner
CUST_46232_PI429285431	11.565742	P	12.508108	P	0.520378766233647	0	lncRNA	50471-1_{1..486}	"gi|310123049|ref|XR_110126.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 458 (LINC00458), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123049|ref|XR_110126.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 458 (LINC00458), misc_RNA"	NA	NA	NA	NA	NA	XR_110126.1	NA	NA	NA	NA	NA	Unknown
CUST_46609_PI429285431	0.88460493	A	0.8859063	A	0.999098365770268	0	lncRNA	50788-1_{1..1341}	"gi|296923745|ref|NR_033694.1| Homo sapiens PDZ domain containing 9 (PDZD9), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|296923745|ref|NR_033694.1| Homo sapiens PDZ domain containing 9 (PDZD9), transcript variant 2, non-coding RNA"	Chr16	 21995186	 21996526	-	255762	NR_033694.1	NA	NA	NA	"hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0,hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30"	NA	inter
LNCA_21_P0004369	0.89619863	A	0.8928104	A	1.00235130205674	0	lncRNA	TCONS_00010286	NA	NA	NA	NA	XLOC_004761	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004761), lincRNA [TCONS_00010286]"	chr5:27406762-27406703	hs|5p14.1	Agilent_HUMAN_G3V2	TCONS_00010286	TCONS_00010286	chr5	 27406703	 27406762	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26077_PI429285431	1.3613464	A	0.92549765	A	1.35270640789044	0	lncRNA	27590-1_{1..775}	lnc-SSPN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SSPN-2:1	chr12	 26574198	 26574972	+	lnc-SSPN-2	lnc-SSPN-2:1	ENSG00000255968.1	RP11-513G19.1	ITPR2	NA	chr12:26564198-26584395	inner
LNCA_21_P0010401	2.534811	A	2.3228884	A	1.15823066592535	0	lncRNA	TCONS_00029542	NA	NA	NA	NA	XLOC_014192	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014192), lincRNA [TCONS_00029542]"	chr22:27072853-27072912	hs|22q12.1	Agilent_HUMAN_G3V2	TCONS_00029542	TCONS_00029542	chr22	 27072853	 27072912	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13125_PI429285431	2.276619	A	2.215239	A	1.04346340134821	0	lncRNA	14753-1_{1..266}	lnc-RTL1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RTL1-4:1	chr14	101587365	101587630	-	lnc-RTL1-4	lnc-RTL1-4:1	XLOC_011132	linc-RTL1-7	NA	NA	NA	inter
LNCA_21_P0010966	1.9426757	A	0.9218917	A	2.0290212857765	0	lncRNA	TCONS_l2_00004426	NA	NA	NA	NA	XLOC_l2_002254	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002254), lincRNA [TCONS_l2_00004426]"	chr11:17662838-17662897	hs|11p15.1	Agilent_HUMAN_G3V2	TCONS_l2_00004426	TCONS_l2_00004426	chr11	 17662838	 17662897	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13175_PI429285431	2.8462014	A	4.1036773	P	0.41827512269318	0	lncRNA	14802-1_{1..431}	lnc-CDH2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH2-3:1	chr18	 26665254	 26665684	-	lnc-CDH2-3	lnc-CDH2-3:1	XLOC_012799	linc-CDH2-2	NA	NA	NA	inter
LNCA_21_P0014208	7.2192316	P	7.3198295	P	0.932646392270851	0	lncRNA	ENST00000518238	XR_108869	XR_108869	NA	Hs.668456	MATN2	matrilin 2	ENST00000518238	THC2673865	GO:0031012|GO:0008150|GO:0003674|GO:0005509|GO:0005578|GO:0005576	"PREDICTED: Homo sapiens hypothetical LOC100506558 (LOC100506558), miscRNA [XR_108869]"	chr8:98964442-98964501	hs|8q22.1	Agilent_HUMAN_G3V2	ENST00000518238	ENST00000518238	chr8	 98964442	 98964501	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48117_PI429285431	2.4088347	A	1.6565217	A	1.68449132650509	0	lncRNA	51989-1_{1..3000}	"gi|410169817|ref|XR_111043.4| PREDICTED: Homo sapiens supervillin pseudogene (LOC645954), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410169817|ref|XR_111043.4| PREDICTED: Homo sapiens supervillin pseudogene (LOC645954), misc_RNA"	NA	NA	NA	NA	NA	XR_111043.4	NA	NA	NA	NA	NA	Unknown
CUST_31173_PI429285431	5.525888	P	5.242718	P	1.21686573958586	0	lncRNA	32968-1_{1..648}	n337601|U86215|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000398744|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000398744|5.3248100|-0.0872978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337601|U86215|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000398744|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000398744|5.3248100|-0.0872978	chr1	248569646	248570293	+	NA	NA	NA	NA	OR2T1	NA	chr1:248569296-248570405	inner
CUST_44080_PI429285431	9.756477	P	9.616989	P	1.10151412865846	0	lncRNA	48748-1_{1..278}	"gi|194239670|ref|NR_003008.2| Homo sapiens small Cajal body-specific RNA 5 (SCARNA5), guide RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|194239670|ref|NR_003008.2| Homo sapiens small Cajal body-specific RNA 5 (SCARNA5), guide RNA"	Chr2	234184372	234184649	+	677775	NR_003008.2	NA	NA	NA	NA	NA	inter
CUST_50256_PI429285431	0.9115393	A	0.9234081	A	0.991806922461334	0	lncRNA	53979-1_{1..939}	hg19_lincRNAsTranscripts_TCONS_l2_00029360 range=chr9:68427850-68434156 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029360 range=chr9:68427850-68434156 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 68427850	 68428788	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008200	0.9091735	A	0.9260112	A	0.988396837703834	0	lncRNA	TCONS_00022086	NA	NA	NA	NA	XLOC_010693	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010693), lincRNA [TCONS_00022086]"	chr13:95157090-95157031	hs|13q32.1	Agilent_HUMAN_G3V2	TCONS_00022086	TCONS_00022086	chr13	 95157031	 95157090	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31163_PI429285431	2.0584235	A	2.459888	A	0.757089361004959	0	lncRNA	32958-1_{1..216}	n337573|EF491822|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395549|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395549|-1.1422700|-0.1608101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337573|EF491822|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395549|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395549|-1.1422700|-0.1608101	chr1	 25245803	 25246018	-	NA	NA	NA	NA	RUNX3	NA	chr1:25235803-25263028	inner
CUST_40827_PI429285431	1.2286255	A	1.122365	A	1.07643447345605	0	lncRNA	41530-1_{1..2305}	n410597|NR_037853|lncRNA|Homosapiens||RefGeneNoncode|NR_037853||0.1057730|-0.2447832	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410597|NR_037853|lncRNA|Homosapiens||RefGeneNoncode|NR_037853||0.1057730|-0.2447832	chr6	  2783576	  2785880	-	NA	NA	NA	NA	WRNIP1	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_WRNIP1:range=chr6:2765857-27855165'pad=0,hg19_refFlat_WRNIP1:range=chr6:2765857-27855165'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40chr6:2773576-2785979"	NA	inner
CUST_9505_PI429285431	7.4884477	P	7.5792437	P	0.939004515068175	0	lncRNA	11015-1_{1..431}	lnc-RNASEH2B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNASEH2B-3:1	chr13	 51102002	 51102432	+	lnc-RNASEH2B-3	lnc-RNASEH2B-3:1	XLOC_010390	linc-RNASEH2B-1	NA	NA	NA	inter
CUST_34987_PI429285431	6.869092	P	5.1116915	P	3.3808839591873	0	lncRNA	36402-2_{3001..4158}	n341914|BX537514|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4395|NULL|-0.6981510|-0.3575935	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341914|BX537514|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4395|NULL|-0.6981510|-0.3575935	chr12	 49085246	 49086403	-	NA	NA	NA	NA	C12orf41	NA	chr12:49072246-49076035	inner
CUST_23020_PI429285431	8.510641	P	8.572668	P	0.95791729065787	0	lncRNA	24592-1_{1..1330}	lnc-ACYP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACYP2-1:1	chr2	 54307069	 54308398	+	lnc-ACYP2-1	lnc-ACYP2-1:1	ENSG00000239235.3	AC008280.5	ACYP2	NA	chr2:54297069-54317601	inter
CUST_34796_PI429285431	1.5244846	A	1.5409867	A	0.988626785511983	0	lncRNA	36233-1_{1..3000}	n341704|AF103907|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4176|NULL|-1.1267900|-0.3034316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341704|AF103907|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4176|NULL|-1.1267900|-0.3034316	chr9	 79379351	 79382350	+	NA	NA	NA	NA	PRUNE2	NA	chr9:79369351-79412485	inner
CUST_8415_PI429285431	0.9180801	A	0.9295479	A	0.992082635514016	0	lncRNA	9990-1_{1..3000}	lnc-KLRG2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLRG2-1:1	chr7	139358716	139361715	-	lnc-KLRG2-1	lnc-KLRG2-1:1	ENSG00000248427	ENST00000510916	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20"	NA	inner
CUST_36989_PI429285431	0.914067	A	1.303845	A	0.763247042887373	0	lncRNA	38134-1_{1..1572}	n345450|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_999|NULL|-1.3646500|-0.3702859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345450|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_999|NULL|-1.3646500|-0.3702859	chr1	 93797795	 93799366	+	NA	NA	NA	NA	DR1	NA	chr1:93811478-93814202	inter
CUST_22949_PI429285431	1.2395356	A	0.9301552	A	1.23917539203723	0	lncRNA	24525-1_{1..412}	lnc-KIAA0196-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0196-1:1	chr8	126010205	126010616	-	lnc-KIAA0196-1	lnc-KIAA0196-1:1	ENSG00000253513.1	RP11-6D1.3	SQLE	NA	chr8:126010720-126020440	inter
CUST_49816_PI429285431	3.0995064	P	3.4816737	P	0.767284065877546	0	lncRNA	53571-1_{1..995}	hg19_lincRNAsTranscripts_TCONS_l2_00025938 range=chr7:64029793-64033609 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025938 range=chr7:64029793-64033609 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 64029793	 64030787	+	NA	NA	NA	NA	ZNF680	"hg19_refFlat_IGLON5:range=chr19:51815102-518320135'pad=0,hg19_refFlat_IGLON5:range=chr19:51815102-518320135'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.30chr7:64019793-64023505"	NA	inter
CUST_754_PI429285431	2.4547632	A	2.5588622	A	0.930385810976539	0	lncRNA	745-1_{1..490}	"transcript_id ""ENST00000437795.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437795.1"" | genecode_v17"	chr2	 11539128	 11539617	+	ENSG00000224177.2	ENST00000437795.1	LINC00570	LINC00570-003	NA	NA	NA	inter
CUST_39594_PI429285431	0.8958076	A	0.904726	A	0.993837303975735	0	lncRNA	40537-1_{1..1977}	n387599|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jho.1||-1.1104700|-0.2785277	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387599|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jho.1||-1.1104700|-0.2785277	chr6	  2356965	  2358941	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
CUST_36139_PI429285431	11.525607	P	12.316673	P	0.57791691429498	0	lncRNA	37422-3_{6001..9000}	n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	chr8	128095803	128098802	-	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00"	NA	inter
CUST_35105_PI429285431	2.128489	A	2.257152	A	0.914678724899338	0	lncRNA	36512-1_{1..1924}	n342075|AK026699|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4556|NULL|-1.1016900|-0.3374355	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342075|AK026699|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4556|NULL|-1.1016900|-0.3374355	chr6	 83625769	 83627692	-	NA	NA	NA	NA	UBE2CBP	NA	chr6:83615769-83637674	inner
CUST_27643_PI429285431	0.90555024	A	0.90314007	A	1.001671998774	0	lncRNA	29221-1_{1..684}	n324849|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171144|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171144|-1.2271400|-0.5108939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324849|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171144|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171144|-1.2271400|-0.5108939	chr21	 25389225	 25389908	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28926_PI429285431	1.7712741	A	1.05571	A	1.6421251701527	0	lncRNA	30643-1_{1..423}	n326351|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096761|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096761|-1.3268800|-0.2839771	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326351|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096761|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096761|-1.3268800|-0.2839771	chr1	164570744	164571166	+	NA	NA	NA	NA	PBX1	NA	chr1:164560744-164581623	inner
CUST_11988_PI429285431	0.9027164	A	0.9144424	A	0.991905097774976	0	lncRNA	13568-1_{1..272}	lnc-AK5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AK5-1:2	chr1	 77686768	 77687039	+	lnc-AK5-1	lnc-AK5-1:2	XLOC_000263	linc-AK5-1	PIGK	NA	chr1:77676768-77685132	inter
CUST_50068_PI429285431	0.91676736	A	0.90361166	A	1.00916053961693	0	lncRNA	53801-1_{1..718}	hg19_lincRNAsTranscripts_TCONS_l2_00027793 range=chr8:58260945-58277400 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027793 range=chr8:58260945-58277400 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 58260945	 58261662	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40399_PI429285431	1.2569906	A	0.92276245	A	1.26070274527958	0	lncRNA	41189-1_{1..3000}	n409263|NR_033435|lncRNA|Homosapiens||RefGeneNoncode|NR_033435||4.3885800|-0.3689983	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409263|NR_033435|lncRNA|Homosapiens||RefGeneNoncode|NR_033435||4.3885800|-0.3689983	chr7	 11013498	 11016497	+	NA	NA	NA	NA	PHF14	NA	chr7:11013499-11157376	inter
CUST_50052_PI429285431	3.3803017	P	3.9185388	P	0.688611843842787	0	lncRNA	53788-1_{1..1387}	hg19_lincRNAsTranscripts_TCONS_l2_00027767 range=chr8:55778401-55783713 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027767 range=chr8:55778401-55783713 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 55778401	 55779787	+	NA	NA	NA	NA	LOC100287651	NA	chr8:55768401-55782502	inter
CUST_16911_PI429285431	3.0334153	A	3.0643635	A	0.978776792770728	0	lncRNA	18621-1_{1..278}	lnc-CMPK2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMPK2-7:1	chr2	  7472544	  7472821	-	lnc-CMPK2-7	lnc-CMPK2-7:1	XLOC_001969	linc-CMPK2-11	NA	NA	NA	inter
CUST_36839_PI429285431	0.89387345	A	0.89076763	A	1.00215510929328	0	lncRNA	38004-1_{1..1432}	n345312|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_861|NULL|-0.9803860|-0.2505145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345312|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_861|NULL|-0.9803860|-0.2505145	chr15	 74779936	 74781367	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40"	NA	inter
CUST_29670_PI429285431	1.0332161	A	0.89000297	A	1.10436198301493	0	lncRNA	31432-1_{1..480}	n333313|AY166784|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084881|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084881|1.0206900|-0.2551968	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333313|AY166784|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084881|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084881|1.0206900|-0.2551968	chr19	 44341246	 44341725	+	NA	NA	NA	NA	ZNF283	NA	chr19:44331473-44353050	inner
CUST_12557_PI429285431	5.3911133	P	5.7623425	P	0.77312350208248	0	lncRNA	14167-1_{1..1308}	lnc-DHRSX-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHRSX-1:1	chrX	  2527147	  2528454	-	lnc-DHRSX-1	lnc-DHRSX-1:1	XLOC_008100	linc-ZBED1-4	NA	NA	NA	inter
CUST_32732_PI429285431	1.4460332	A	1.969827	A	0.695540390216667	0	lncRNA	34372-1_{1..1024}	n339360|AY545528|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1792|NULL|1.1644400|-0.1691554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339360|AY545528|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1792|NULL|1.1644400|-0.1691554	chr3	 50371525	 50372548	+	NA	NA	NA	NA	TUSC2	NA	chr3:50362341-50365668	inner
CUST_9891_PI429285431	0.8810679	A	0.8843547	A	0.997724357057231	0	lncRNA	11415-1_{1..1198}	lnc-FAM84B-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM84B-6:4	chr8	128156008	128157205	-	lnc-FAM84B-6	lnc-FAM84B-6:4	XLOC_007214	linc-FAM84B-8	NA	NA	NA	inter
CUST_20030_PI429285431	1.89624	A	2.2416666	A	0.787075206703759	0	lncRNA	21683-1_{1..640}	lnc-C4orf21-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C4orf21-1:1	chr4	113571148	113571787	-	lnc-C4orf21-1	lnc-C4orf21-1:1	ENSG00000249532.1	RP11-148B6.1	LARP7	"hg19_refFlat_LARP7:range=chr4:113565826-1135784835'pad=0,hg19_refFlat_LARP7:range=chr4:113565826-1135784835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LARP7:range=chr4:113565626-1135784835'pad=0,hg19_refFlat_LARP7:range=chr4:113565626-1135784835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80chr4:113561148-113578742"	NA	inner
CUST_21640_PI429285431	0.89548826	A	1.1078222	A	0.863139744864766	0	lncRNA	23252-1_{1..2923}	lnc-EBPL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EBPL-2:1	chr13	 50354651	 50357573	-	lnc-EBPL-2	lnc-EBPL-2:1	ENSG00000224798.1	KPNA3-IT1	KPNA3	"hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00chr13:50344651-50364767"	NA	inner
CUST_45070_PI429285431	7.624027	P	7.5760393	P	1.03382192214416	0	lncRNA	49555-1_{1..2017}	"gi|301171420|ref|NR_002187.3| Homo sapiens triosephosphate isomerase 1 pseudogene 2 (TPI1P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301171420|ref|NR_002187.3| Homo sapiens triosephosphate isomerase 1 pseudogene 2 (TPI1P2), non-coding RNA"	Chr7	128695277	128697293	+	286016	NR_002187.3	NA	NA	NA	NA	NA	inter
CUST_47801_PI429285431	3.1253815	P	3.151874	P	0.981804374593622	0	lncRNA	51722-1_{1..3000}	"gi|225903387|ref|NR_027420.1| Homo sapiens ankyrin repeat domain 57 pseudogene (LOC389834), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225903387|ref|NR_027420.1| Homo sapiens ankyrin repeat domain 57 pseudogene (LOC389834), non-coding RNA"	NT_113889.1	    46845	    49844	-	389834	NR_027420.1	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00"	NA	Unknown
CUST_28987_PI429285431	0.9085292	A	1.547069	A	0.642362776763539	0	lncRNA	30708-1_{1..539}	n326468|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097634|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097634|-0.9998300|-0.2554851	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326468|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097634|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097634|-0.9998300|-0.2554851	chr1	116797178	116797716	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_855_PI429285431	1.4086258	A	1.34907	A	1.04214483923434	0	lncRNA	849-1_{1..769}	"transcript_id ""ENST00000436551.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436551.1"" | genecode_v17"	chr2	 42158759	 42159527	-	ENSG00000234362.1	ENST00000436551.1	AC104654.2	AC104654.2-002	LOC400950	NA	chr2:42162508-42170863	inter
CUST_5436_PI429285431	2.3340278	A	2.736351	A	0.756638871345708	0	lncRNA	5370-1_{1..518}	"transcript_id ""ENST00000566054.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566054.1"" | genecode_v17"	chr16	 14456966	 14457483	-	ENSG00000260009.1	ENST00000566054.1	RP11-65J21.1	RP11-65J21.1-001	NA	NA	NA	inter
LNCA_19_P00319140	3.4972734	P	3.3702245	P	1.09205756029701	0	lncRNA	THC2654949	NA	NA	NA	NA	XLOC_012053	NA	NA	THC2654949	NA	"BROAD Institute lincRNA (XLOC_012053), lincRNA [TCONS_00025091]"	chr16:087306889-087306830	hs|16q24.2	Agilent_HUMAN_G3V2	THC2654949	THC2654949	chr16	 87306830	 87306889	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010382	7.344668	P	7.4621134	P	0.921818483027483	0	lncRNA	ENST00000440858	NA	NA	NA	NA	XLOC_014358	NA	ENST00000440858	NA	NA	"BROAD Institute lincRNA (XLOC_014358), lincRNA [TCONS_00029477]"	chr22:35109888-35108865	hs|22q12.3	Agilent_HUMAN_G3V2	ENST00000440858	ENST00000440858	chr22	 35108865	 35109888	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18947_PI429285431	0.8829145	A	1.2044864	A	0.800197540770483	0	lncRNA	20638-1_{1..1652}	lnc-ARL4C-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARL4C-2:3	chr2	235797293	235798944	-	lnc-ARL4C-2	lnc-ARL4C-2:3	ENSG00000235726	AC010148.1	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70"	NA	inter
CUST_12030_PI429285431	0.88410455	A	0.88815534	A	0.997196144498385	0	lncRNA	13613-1_{1..1158}	lnc-PPP4R1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP4R1-3:1	chr18	  9895799	  9896956	-	lnc-PPP4R1-3	lnc-PPP4R1-3:1	XLOC_012759	linc-PPP4R1-1	TXNDC2	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90chr18:9885799-9888156"	NA	inter
CUST_15477_PI429285431	1.5279105	A	1.3691195	A	1.11635122696531	0	lncRNA	17165-1_{1..442}	lnc-MRPS30-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPS30-4:1	chr5	 45228193	 45228634	+	lnc-MRPS30-4	lnc-MRPS30-4:1	XLOC_004375	linc-PARP8-2	NA	NA	NA	inter
LNCA_21_P0008846	7.7777324	P	7.8580275	P	0.945864152568756	0	lncRNA	THC2693431	NA	NA	NA	NA	XLOC_011451	NA	NA	THC2693431	NA	"BROAD Institute lincRNA (XLOC_011451), lincRNA [TCONS_00024101]"	chr15:041901771-041901712	hs|15q15.1	Agilent_HUMAN_G3V2	THC2693431	THC2693431	chr15	 41901712	 41901771	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11393_PI429285431	2.2929757	A	2.149919	A	1.10424224462629	0	lncRNA	12958-1_{1..730}	lnc-NKX2-3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NKX2-3-1:1	chr10	101287751	101288480	+	lnc-NKX2-3-1	lnc-NKX2-3-1:1	XLOC_008580	linc-NKX2-3-1	NKX2-3	NA	chr10:101292690-101296281	inter
CUST_9554_PI429285431	0.9061547	A	0.9553911	A	0.966447721972231	0	lncRNA	11069-1_{1..665}	lnc-C7orf53-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C7orf53-2:2	chr7	112260463	112261127	+	lnc-C7orf53-2	lnc-C7orf53-2:2	XLOC_006210	linc-FOXP2-5	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70"	NA	inter
CUST_18102_PI429285431	0.8929487	A	1.1977475	A	0.809555110212523	0	lncRNA	19836-2_{3001..3300}	lnc-KCNA5-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNA5-3:3	chr12	  5634015	  5634314	+	lnc-KCNA5-3	lnc-KCNA5-3:3	XLOC_009628	linc-CD9-4	NA	NA	NA	inter
CUST_13168_PI429285431	2.3849373	A	0.91220653	A	2.77546744302445	0	lncRNA	14797-1_{1..457}	lnc-FPGT-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FPGT-3:4	chr1	 73813817	 73814273	+	lnc-FPGT-3	lnc-FPGT-3:4	XLOC_000256	linc-FPGT-2	NA	NA	NA	inter
CUST_42315_PI429285431	6.7299013	P	6.7434115	P	0.990679153874606	0	lncRNA	44946-1_{1..79}	ENST00000383893 ncrna:snoRNA chromosome:GRCh37:1:76252757:76252835:1 gene:ENSG00000206620 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000383893 ncrna:snoRNA chromosome:GRCh37:1:76252757:76252835:1 gene:ENSG00000206620 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 76252757	 76252835	+	ENSG00000206620	ENST00000383893	NA	NA	MSH4	NA	chr1:76262630-76262835	inter
CUST_30614_PI429285431	1.04979	A	1.1205686	A	0.952124012889873	0	lncRNA	32396-1_{1..290}	n335938|X71927|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323174_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323174_04|-0.7064220|-0.2762697	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335938|X71927|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323174_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323174_04|-0.7064220|-0.2762697	chr6	  3364552	  3364841	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3354552-3374842	inner
CUST_581_PI429285431	3.3768206	P	2.706713	A	1.59119163835216	0	lncRNA	573-1_{1..455}	"transcript_id ""ENST00000421147.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421147.1"" | genecode_v17"	chr1	222139683	222140137	+	ENSG00000228437.1	ENST00000421147.1	RP11-400N13.2	RP11-400N13.2-002	NA	NA	NA	inter
CUST_1815_PI429285431	0.9024733	A	0.89912564	A	1.00232311535103	0	lncRNA	1802-1_{1..848}	"transcript_id ""ENST00000515811.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000515811.1"" | genecode_v17"	chr4	 83534266	 83535113	-	ENSG00000231782.2	ENST00000515811.1	LINC00575	LINC00575-002	SCD5	NA	chr4:83550690-83552590	inter
CUST_29479_PI429285431	7.38662	P	7.506578	P	0.920214439684793	0	lncRNA	31237-1_{1..579}	n332901|AF086163|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067042|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067042|-0.9928110|-0.2804680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332901|AF086163|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067042|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067042|-0.9928110|-0.2804680	chr15	 42191629	 42192207	-	NA	NA	NA	NA	EHD4	NA	chr15:42191638-42202208	inner
CUST_45925_PI429285431	4.416239	P	3.0737767	A	2.53583750258185	0	lncRNA	50232-2_{3001..3950}	"gi|349501062|ref|NR_045204.1| Homo sapiens checkpoint kinase 1 (CHEK1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|349501062|ref|NR_045204.1| Homo sapiens checkpoint kinase 1 (CHEK1), transcript variant 5, non-coding RNA"	Chr11	125498031	125498980	+	1111	NR_045204.1	NA	NA	NA	"hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30"	NA	inter
CUST_19198_PI429285431	1.2531958	A	1.5680538	A	0.803930115197866	0	lncRNA	20868-1_{1..590}	lnc-C2orf42-3:31	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:31	chr2	 70313256	 70313845	-	lnc-C2orf42-3	lnc-C2orf42-3:31	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_3219_PI429285431	0.90563464	A	0.912704	A	0.995111878986257	0	lncRNA	3198-1_{1..591}	"transcript_id ""ENST00000604955.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604955.1"" | genecode_v17"	chr8	 89820547	 89821137	-	ENSG00000271156.1	ENST00000604955.1	RP11-642C5.1	RP11-642C5.1-001	NA	NA	NA	inter
CUST_33072_PI429285431	8.157719	P	8.469337	P	0.80573760780119	0	lncRNA	34679-1_{1..2104}	n339759|BC041436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2206|NULL|3.0970700|-0.1019193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339759|BC041436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2206|NULL|3.0970700|-0.1019193	chr20	 62605466	 62607569	-	NA	NA	NA	NA	PRPF6	NA	chr20:62612431-62621362	inner
CUST_40113_PI429285431	7.991767	P	8.412032	P	0.747287346978859	0	lncRNA	40958-1_{1..3000}	n407566|NR_027024|lncRNA|Homosapiens||RefGeneNoncode|NR_027024||11.9366000|-0.2191142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407566|NR_027024|lncRNA|Homosapiens||RefGeneNoncode|NR_027024||11.9366000|-0.2191142	chr15	 78206558	 78209557	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6628_PI429285431	8.704936	P	8.431971	P	1.2082885297718	0	lncRNA	6574-1_{1..168}	"transcript_id ""ENST00000419863.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419863.1"" | genecode_v17"	chr20	  4456285	  4456452	+	ENSG00000238282.1	ENST00000419863.1	RP5-1164C1.2	RP5-1164C1.2-001	NA	NA	NA	inter
LNCA_21_P0007490	2.1491642	A	1.9592869	A	1.14066669899937	0	lncRNA	BC041342	NA	BC041342	NA	Hs.440981	XLOC_009859	NA	NA	THC2610268	NA	"BROAD Institute lincRNA (XLOC_009859), lincRNA [TCONS_00020194]"	chr12:103953427-103953486	hs|12q23.3	Agilent_HUMAN_G3V2	BC041342	BC041342	chr12	103953427	103953486	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14754_PI429285431	3.1636784	P	3.433102	P	0.829650950080074	0	lncRNA	16417-1_{1..339}	lnc-NR2F2-8:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR2F2-8:7	chr15	 95996993	 95997331	+	lnc-NR2F2-8	lnc-NR2F2-8:7	XLOC_011368	linc-NR2F2-3	NA	NA	NA	inter
CUST_49261_PI429285431	0.89129686	A	0.90271455	A	0.992117094719065	0	lncRNA	53080-1_{1..299}	hg19_lincRNAsTranscripts_TCONS_l2_00022487 range=chr5:116751196-116831007 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022487 range=chr5:116751196-116831007 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	116751196	116751494	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_311_PI429285431	4.141129	P	5.165797	P	0.491523398013804	0	lncRNA	302-1_{1..426}	"transcript_id ""ENST00000587165.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587165.1"" | genecode_v17"	chr1	 87597738	 87598163	+	ENSG00000267272.1	ENST00000587165.1	RP5-1052I5.1	RP5-1052I5.1-010	NA	NA	NA	inter
CUST_31599_PI429285431	0.8885441	A	0.88835776	A	1.00012916938727	0	lncRNA	33355-1_{1..523}	n338106|AF075094|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|494|NULL|-1.2813300|-0.3632529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338106|AF075094|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|494|NULL|-1.2813300|-0.3632529	chr22	 39904519	 39905041	+	NA	NA	NA	NA	SMCR7L	NA	chr22:39898284-39914137	inner
LNCA_21_P0014562	1.1526585	A	1.8477154	A	0.617684956542299	0	lncRNA	XR_110309	XR_110309	XR_110309	NA	Hs.438871	LOC100505636	uncharacterized LOC100505636	NA	THC2736159	NA	"PREDICTED: Homo sapiens hypothetical LOC100505636, transcript variant 1 (LOC100505636), miscRNA [XR_110309]"	chr5:139483504-139483445	hs|5q31.2	Agilent_HUMAN_G3V2	XR_110309	XR_110309	chr5	139483445	139483504	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29646_PI429285431	6.456011	P	6.41063	P	1.03195567153822	0	lncRNA	31407-1_{1..226}	n333226|AF527782|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000081258|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000081258|1.1662900|-0.0041207	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333226|AF527782|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000081258|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000081258|1.1662900|-0.0041207	chr11	117161202	117161427	-	NA	NA	NA	NA	BACE1	NA	chr11:117156402-117172481	inner
LNCA_21_P0007849	0.9002243	A	0.8970347	A	1.00221330800513	0	lncRNA	TCONS_00021199	NA	NA	NA	NA	XLOC_009858	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009858), lincRNA [TCONS_00021199]"	chr12:103556724-103557394	hs|12q23.2	Agilent_HUMAN_G3V2	TCONS_00021199	TCONS_00021199	chr12	103556724	103557394	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39963_PI429285431	2.9339411	P	2.765325	P	1.12397979385436	0	lncRNA	40834-1_{1..2358}	n407019|NR_024517_3|lncRNA|Homosapiens||RefGeneNoncode|NR_024517_3||0.1374120|-0.3112925	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407019|NR_024517_3|lncRNA|Homosapiens||RefGeneNoncode|NR_024517_3||0.1374120|-0.3112925	chr6	  4567657	  4570014	-	NA	NA	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60"	NA	inter
CUST_34046_PI429285431	4.035387	P	3.984666	P	1.03578243623076	0	lncRNA	35577-2_{3001..3186}	n340863|AK123944|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3328|NULL|0.3428940|-0.1299303	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340863|AK123944|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3328|NULL|0.3428940|-0.1299303	chr17	 73875452	 73875637	+	NA	NA	NA	NA	TRIM65	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-60.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TRIM47:range=chr17:73870564-738746295'pad=0,hg19_refFlat_TRIM47:range=chr17:73870564-738746295'pad=0 3'pad=0 strand=- repeatMasking=none,-115.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr17:73885041-73885621"	NA	inner
CUST_34394_PI429285431	3.2524834	P	2.346213	A	1.8741941354075	0	lncRNA	35878-1_{1..3000}	n341265|BX647900|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3733|NULL|-0.9284320|-0.4067304	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341265|BX647900|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3733|NULL|-0.9284320|-0.4067304	chr7	 84161791	 84164790	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3718_PI429285431	0.8827367	A	0.8853383	A	0.99819833324864	0	lncRNA	3686-1_{1..778}	"transcript_id ""ENST00000598902.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598902.1"" | genecode_v17"	chr10	 67375491	 67376268	+	ENSG00000228065.5	ENST00000598902.1	RP11-222A11.1	RP11-222A11.1-007	NA	NA	NA	inter
CUST_17808_PI429285431	3.978733	P	3.8269117	P	1.11097110925	0	lncRNA	19544-1_{1..1364}	lnc-KATNAL1-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KATNAL1-3:6	chr13	 30948789	 30950152	-	lnc-KATNAL1-3	lnc-KATNAL1-3:6	XLOC_010556	linc-KATNAL1-3	NA	NA	NA	inter
LNCA_21_P0007283	2.0445523	A	0.89531845	A	2.21796077280637	0	lncRNA	TCONS_00019500	NA	NA	NA	NA	XLOC_009301	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009301), lincRNA [TCONS_00019500]"	chr11:119758328-119784032	hs|11q23.3	Agilent_HUMAN_G3V2	TCONS_00019500	TCONS_00019500	chr11	119758328	119784032	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47357_PI429285431	0.8901076	A	0.88805974	A	1.00142047630728	0	lncRNA	51408-1_{1..1480}	"gi|209862749|ref|NR_024027.2| Homo sapiens long intergenic non-protein coding RNA 158 (LINC00158), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|209862749|ref|NR_024027.2| Homo sapiens long intergenic non-protein coding RNA 158 (LINC00158), non-coding RNA"	Chr21	 26758133	 26759612	-	54072	NR_024027.2	NA	NA	NA	NA	NA	inter
CUST_43595_PI429285431	7.9230456	P	8.046499	P	0.917987618302477	0	lncRNA	48359-1_{1..3000}	"gi|410170852|ref|XR_171110.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170852|ref|XR_171110.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	XR_171110.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005740	0.8973167	A	0.91887623	A	0.985167178906302	0	lncRNA	TCONS_00014806	NA	NA	NA	NA	XLOC_006882	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006882), lincRNA [TCONS_00014806]"	chr8:101468449-101468508	hs|8q22.2	Agilent_HUMAN_G3V2	TCONS_00014806	TCONS_00014806	chr8	101468449	101468508	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37825_PI429285431	0.9162446	A	0.91672117	A	0.999669721402149	0	lncRNA	38918-1_{1..333}	n346346|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1896|NULL|-1.3162900|-0.2229130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346346|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1896|NULL|-1.3162900|-0.2229130	chr20	 49031137	 49031469	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25587_PI429285431	0.8986491	A	0.90357554	A	0.996591075625122	0	lncRNA	27117-1_{1..852}	lnc-AC012652.1.1-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC012652.1.1-1:13	chr15	 41580181	 41581032	+	lnc-AC012652.1.1-1	lnc-AC012652.1.1-1:13	ENSG00000247556.2	OIP5-AS1	CHP	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70chr15:41570181-41574085"	NA	inter
LNCA_21_P0001136	2.942038	A	2.2121336	A	1.65852918576582	0	lncRNA	ENST00000449812	NA	NA	NA	NA	XLOC_000850	NA	ENST00000449812	NA	NA	"BROAD Institute lincRNA (XLOC_000850), lincRNA [TCONS_00000528]"	chr1:59548279-59522402	hs|1p32.1	Agilent_HUMAN_G3V2	ENST00000449812	ENST00000449812	chr1	 59522402	 59548279	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006193	12.185244	P	11.795696	P	1.30998291860178	0	lncRNA	TCONS_00016098	NA	NA	NA	NA	XLOC_007489	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007489), lincRNA [TCONS_00016098]"	chr9:102648914-102648973	hs|9q31.1	Agilent_HUMAN_G3V2	TCONS_00016098	TCONS_00016098	chr9	102648914	102648973	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004944	2.5499434	A	1.5693362	A	1.97329575291743	0	lncRNA	TCONS_00011960	NA	NA	NA	NA	XLOC_005473	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005473), lincRNA [TCONS_00011960]"	chr6:136872667-136872726	hs|6q23.3	Agilent_HUMAN_G3V2	TCONS_00011960	TCONS_00011960	chr6	136872667	136872726	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21013_PI429285431	0.9047755	A	2.6212666	A	0.304287906037056	0	lncRNA	22642-1_{1..1080}	lnc-SNRNP25-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNRNP25-1:3	chr16	    74246	    75325	+	lnc-SNRNP25-1	lnc-SNRNP25-1:3	ENSG00000231439.3	WASIR2	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10"	NA	inter
CUST_44491_PI429285431	8.440373	P	8.121967	P	1.24695205935247	0	lncRNA	49092-2_{3001..3304}	"gi|325910877|ref|NR_037947.1| Homo sapiens NOP2/Sun RNA methyltransferase family, member 2 (NSUN2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|325910877|ref|NR_037947.1| Homo sapiens NOP2/Sun RNA methyltransferase family, member 2 (NSUN2), transcript variant 3, non-coding RNA"	Chr5	  6602352	  6602655	-	54888	NR_037947.1	NA	NA	NA	NA	NA	inter
CUST_40453_PI429285431	0.89119065	A	0.9896728	A	0.934015146002527	0	lncRNA	41227-1_{1..3000}	n409362|NR_033732|lncRNA|Homosapiens||RefGeneNoncode|NR_033732||5.9160100|-0.2703522	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n409362|NR_033732|lncRNA|Homosapiens||RefGeneNoncode|NR_033732||5.9160100|-0.2703522	chrY	 21617316	 21620315	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70"	NA	inter
CUST_4715_PI429285431	2.4157674	A	1.2338387	A	2.26879883989981	0	lncRNA	4661-1_{1..640}	"transcript_id ""ENST00000548475.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548475.1"" | genecode_v17"	chr14	 19650061	 19650700	+	ENSG00000225210.5	ENST00000548475.1	AL589743.1	AL589743.1-012	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_27680_PI429285431	1.3361602	A	0.9099152	A	1.34373160027001	0	lncRNA	29258-1_{1..636}	n324887|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158285|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158285|-1.2185800|-0.4563658	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324887|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158285|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158285|-1.2185800|-0.4563658	chr21	 19595800	 19596435	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_36181_PI429285431	1.0954645	A	1.0024608	A	1.0665885162487	0	lncRNA	37448-4_{9001..12000}	n344736|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_285|NULL|-1.6131600|-0.3223694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344736|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_285|NULL|-1.6131600|-0.3223694	chrX	 45613650	 45616649	-	NA	NA	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-22.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10"	NA	inter
CUST_40443_PI429285431	5.4760375	P	3.8647738	P	3.05519338202973	0	lncRNA	41220-2_{3001..4215}	n409339|NR_033699|lncRNA|Homosapiens||RefGeneNoncode|NR_033699||12.2622000|-0.3721171	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409339|NR_033699|lncRNA|Homosapiens||RefGeneNoncode|NR_033699||12.2622000|-0.3721171	chrX	146996468	146997682	+	NA	NA	NA	NA	FMR1	NA	chrX:146993469-147032647	inter
CUST_24715_PI429285431	3.6205082	P	4.1978445	P	0.670200050331362	0	lncRNA	26261-1_{1..436}	lnc-MOCS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MOCS1-1:1	chr6	 39867525	 39867960	-	lnc-MOCS1-1	lnc-MOCS1-1:1	ENSG00000240126.1	RP11-61I13.2	DAAM2	NA	chr6:39857525-39872653	inner
CUST_11857_PI429285431	0.90943676	A	0.91953	A	0.993028314893317	0	lncRNA	13434-1_{1..553}	lnc-EMX2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EMX2-5:1	chr10	120007211	120007763	+	lnc-EMX2-5	lnc-EMX2-5:1	XLOC_008636	linc-NANOS1-3	NA	NA	NA	inter
CUST_24343_PI429285431	0.90388227	A	0.9183261	A	0.990038250193298	0	lncRNA	25896-1_{1..687}	lnc-SNX11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNX11-1:1	chr17	 46281354	 46282040	+	lnc-SNX11-1	lnc-SNX11-1:1	ENSG00000263787.1	RP11-456D7.1	SKAP1	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20chr17:46271354-46291891"	NA	inner
CUST_36121_PI429285431	7.5305905	P	7.484123	P	1.03273313462581	0	lncRNA	37410-2_{3001..5608}	n344695|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_244|NULL|-1.3549700|-0.3845783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344695|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_244|NULL|-1.3549700|-0.3845783	chr8	135799138	135801745	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8588_PI429285431	2.1376653	A	1.2992221	A	1.78811955573525	0	lncRNA	10144-1_{1..1844}	lnc-CCDC103-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC103-1:1	chr17	 43005426	 43007269	+	lnc-CCDC103-1	lnc-CCDC103-1:1	ENSG00000247075	ENST00000499010	KIF18B	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_KIF18B:range=chr17:43003448-430137125'pad=0,hg19_refFlat_KIF18B:range=chr17:43003448-430137125'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_KIF18B:range=chr17:43003768-430137125'pad=0,hg19_refFlat_KIF18B:range=chr17:43003768-430137125'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60chr17:43003448-43015641"	NA	inner
CUST_3681_PI429285431	2.7270205	A	2.6675527	A	1.0420812735144	0	lncRNA	3649-1_{1..1211}	"transcript_id ""ENST00000453853.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000453853.2"" | genecode_v17"	chr10	 46797868	 46799078	-	ENSG00000230761.2	ENST00000453853.2	RP11-342C24.8	RP11-342C24.8-001	NA	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.40"	NA	inter
CUST_50107_PI429285431	9.137987	P	8.427896	P	1.63590730099383	0	lncRNA	53837-1_{1..912}	hg19_lincRNAsTranscripts_TCONS_l2_00028789 range=chr9:69065461-69087366 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028789 range=chr9:69065461-69087366 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69065461	 69066372	+	NA	NA	NA	NA	LOC100507370	NA	chr9:69065490-69089939	inter
CUST_45074_PI429285431	1.1077704	A	0.9076973	A	1.14875655993622	0	lncRNA	49557-3_{6001..6410}	"gi|380692324|ref|NR_046443.1| Homo sapiens centrosomal protein 41kDa (CEP41), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|380692324|ref|NR_046443.1| Homo sapiens centrosomal protein 41kDa (CEP41), transcript variant 5, non-coding RNA"	NW_003871065.1	    55189	    55598	-	95681	NR_046443.1	NA	NA	NA	NA	NA	Unknown
CUST_9182_PI429285431	0.9135071	A	0.9196632	A	0.995742007706574	0	lncRNA	10697-1_{1..1493}	lnc-KBTBD6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KBTBD6-1:1	chr13	 41721960	 41723452	-	lnc-KBTBD6-1	lnc-KBTBD6-1:1	ENSG00000250382	ENST00000513961	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30"	NA	inter
CUST_51640_PI429285431	0.9143478	A	1.4302806	A	0.699340615540162	0	lncRNA	55210-1_{1..612}	hg19_lincRNAsTranscripts_TCONS_l2_00010812 range=chr17:44324301-44325499 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010812 range=chr17:44324301-44325499 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 44324301	 44324912	+	NA	NA	NA	NA	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.50;hg19_refFlat_C11orf44:range=chr11:130542874-1305840925'pad=0,hg19_refFlat_C11orf44:range=chr11:130542874-1305840925'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00"	NA	inter
CUST_6791_PI429285431	0.90018654	A	0.8970034	A	1.00220882037379	0	lncRNA	6739-1_{1..424}	"transcript_id ""ENST00000449840.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000449840.1"" | genecode_v17"	chr21	 20325582	 20326005	-	ENSG00000226204.1	ENST00000449840.1	AL157359.3	AL157359.3-001	NA	NA	NA	inter
CUST_35988_PI429285431	1.7891874	A	1.6852559	A	1.07469814435085	0	lncRNA	37329-1_{1..3000}	n344604|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_152|NULL|-1.2887500|-0.3048318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344604|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_152|NULL|-1.2887500|-0.3048318	chrX	 73421503	 73424502	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60"	NA	inter
CUST_8345_PI429285431	0.90375644	A	2.0802784	A	0.442416789103552	0	lncRNA	9925-1_{1..2102}	lnc-RHOXF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RHOXF2-1:1	chrX	119279544	119281645	+	lnc-RHOXF2-1	lnc-RHOXF2-1:1	ENSG00000249999	ENSG00000258545.1	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40"	NA	inter
CUST_28906_PI429285431	1.1179473	A	0.89041156	A	1.17083334582129	0	lncRNA	30623-1_{1..690}	n326330|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000084275|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000084275|-0.9303580|-0.3123689	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326330|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000084275|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000084275|-0.9303580|-0.3123689	chr1	171410061	171410750	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51939_PI429285431	5.1152954	P	5.2411385	P	0.916468309576695	0	lncRNA	55480-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00016159 range=chr20:12915491-12919905 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016159 range=chr20:12915491-12919905 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 12915491	 12918490	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10"	NA	inter
CUST_47_PI429201921	0.8972204	A	0.895445	A	1.00123137101987	0	lncRNA	48-1_{1..1469}	TC19002274.hg.1	TCONS_00026758-XLOC_013189 // Rinn lincRNAs // linc-MZF1-1 chr19:-:76220-77690 // chr19 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr19:-:76220-77690	NA	Affy_HUMAN_HTA2.0	TCONS_00026758-XLOC_013189	linc-MZF1-1	chr19	    76220	    77690	-	NA	NA	NA	NA	KIRREL3	NA	chr11:126852348-126870766	Unknown
CUST_25529_PI429285431	2.7407522	A	3.1948025	P	0.729990553541602	0	lncRNA	27059-1_{1..434}	lnc-PRR7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRR7-2:1	chr5	176930359	176930792	+	lnc-PRR7-2	lnc-PRR7-2:1	ENSG00000248996.1	RP11-1334A24.6	DOK3	"hg19_refFlat_DOK3:range=chr5:176930046-1769365415'pad=0,hg19_refFlat_DOK3:range=chr5:176930046-1769365415'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00chr5:176928905-176937427"	NA	inner
CUST_4621_PI429285431	2.6379862	A	3.2034452	P	0.675740392425989	0	lncRNA	4567-1_{1..390}	"transcript_id ""ENST00000594428.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594428.1"" | genecode_v17"	chr13	 47035080	 47035469	-	ENSG00000231817.2	ENST00000594428.1	RP11-189B4.6	RP11-189B4.6-004	LOC731932	"hg19_refFlat_OR1E1:range=chr17:3300760-33017045'pad=0,hg19_refFlat_OR1E1:range=chr17:3300760-33017045'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_OR7A5:range=chr19:14938094-149390535'pad=0,hg19_refFlat_OR7A5:range=chr19:14938094-149390535'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_OR1K1:range=chr9:125562402-1255633525'pad=0,hg19_refFlat_OR1K1:range=chr9:125562402-1255633525'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90;hg19_refFlat_OR7A17:range=chr19:14991238-149921675'pad=0,hg19_refFlat_OR7A17:range=chr19:14991238-149921675'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_OR1J2:range=chr9:125273081-1252740225'pad=0,hg19_refFlat_OR1J2:range=chr9:125273081-1252740225'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90chr13:47025080-47035198"	NA	inter
CUST_34920_PI429285431	1.0985396	A	0.8936841	A	1.15257089978393	0	lncRNA	36342-1_{1..1353}	n341838|AF052091|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4317|NULL|0.8569550|-0.2005425	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341838|AF052091|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4317|NULL|0.8569550|-0.2005425	chr6	 38142930	 38144282	+	NA	NA	NA	NA	BTBD9	NA	chr6:38136227-38154082	inner
CUST_43319_PI429285431	9.048784	P	9.217859	P	0.889412755290259	0	lncRNA	48150-1_{1..666}	ENST00000598573 havana:lincRNA chromosome:GRCh37:10:10989127:10994129:-1 gene:ENSG00000229240 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000598573 havana:lincRNA chromosome:GRCh37:10:10989127:10994129:-1 gene:ENSG00000229240 gene_biotype:lincRNA transcript_biotype:lincRNA	chr10	 10989127	 10989792	-	ENSG00000229240	ENST00000598573	NA	NA	NA	NA	NA	inter
CUST_22347_PI429285431	0.90161216	A	0.9124187	A	0.992537461317482	0	lncRNA	23941-1_{1..782}	lnc-CLEC1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLEC1B-1:1	chr12	 10183142	 10183923	-	lnc-CLEC1B-1	lnc-CLEC1B-1:1	ENSG00000256803.1	RP11-133L14.5	CLEC9A	"hg19_refFlat_CLEC12B:range=chr12:10163359-101710805'pad=0,hg19_refFlat_CLEC12B:range=chr12:10163359-101710805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CLEC12B:range=chr12:10163359-101683455'pad=0,hg19_refFlat_CLEC12B:range=chr12:10163359-101683455'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10chr12:10183276-10193205"	NA	inter
CUST_44262_PI429285431	1.6451156	A	1.0130904	A	1.54973893145063	0	lncRNA	48904-3_{6001..9000}	"gi|284925116|ref|NR_033289.1| Homo sapiens glycerol kinase 5 (putative) (GK5), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|284925116|ref|NR_033289.1| Homo sapiens glycerol kinase 5 (putative) (GK5), transcript variant 2, non-coding RNA"	Chr3	141882369	141885368	-	256356	NR_033289.1	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_28340_PI429285431	0.89479524	A	0.9023201	A	0.994797743358228	0	lncRNA	29986-1_{1..652}	n325646|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045606|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045606|-0.9985210|-0.2691738	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325646|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045606|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045606|-0.9985210|-0.2691738	chr13	 99027366	 99028017	+	NA	NA	NA	NA	FARP1	NA	chr13:99017366-99040623	inner
CUST_16141_PI429285431	4.990114	P	5.2228675	P	0.851009121167557	0	lncRNA	17847-1_{1..3000}	lnc-WDR27-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR27-1:4	chr6	169830736	169833735	-	lnc-WDR27-1	lnc-WDR27-1:4	XLOC_005939	linc-THBS2-3	NA	NA	NA	inter
CUST_25689_PI429285431	0.9092629	A	0.9152734	A	0.995842505281123	0	lncRNA	27218-1_{1..370}	lnc-EEF1A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EEF1A1-1:1	chr6	 74202411	 74202780	-	lnc-EEF1A1-1	lnc-EEF1A1-1:1	ENSG00000223821.1	RP11-505P4.6	MTO1	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr6:74192411-74211179"	NA	inner
CUST_47146_PI429285431	10.288807	P	10.499437	P	0.864159785252996	0	lncRNA	51227-1_{1..1668}	"gi|336391145|ref|NR_038457.1| Homo sapiens N-ethylmaleimide-sensitive factor attachment protein, alpha (NAPA), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336391145|ref|NR_038457.1| Homo sapiens N-ethylmaleimide-sensitive factor attachment protein, alpha (NAPA), transcript variant 3, non-coding RNA"	Chr19	 47990891	 47992558	-	8775	NR_038457.1	NA	NA	NA	NA	NA	inter
CUST_3378_PI429285431	0.9151182	A	0.9240453	A	0.993831310776736	0	lncRNA	3352-1_{1..1430}	"transcript_id ""ENST00000423440.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423440.2"" | genecode_v17"	chr9	 23829668	 23831097	+	ENSG00000231460.2	ENST00000423440.2	RP11-321L2.1	RP11-321L2.1-001	ELAVL2	NA	chr9:23819668-23826063	inter
CUST_20461_PI429285431	5.53541	P	5.5959244	P	0.958922149962889	0	lncRNA	22105-1_{1..967}	lnc-OR2T29-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR2T29-1:1	chr1	248648470	248649436	-	lnc-OR2T29-1	lnc-OR2T29-1:1	ENSG00000229255.1	RP11-407H12.8	OR2T5	NA	chr1:248651890-248652837	inter
CUST_862_PI429285431	7.8872457	P	7.918838	P	0.978339909433908	0	lncRNA	856-1_{1..553}	"transcript_id ""ENST00000442821.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442821.1"" | genecode_v17"	chr2	 45395722	 45396274	+	ENSG00000231054.1	ENST00000442821.1	AC009236.2	AC009236.2-001	NA	NA	NA	inter
CUST_51452_PI429285431	11.686384	P	11.955985	P	0.829548938895592	0	lncRNA	55029-1_{1..712}	hg19_lincRNAsTranscripts_TCONS_l2_00010112 range=chr16:32302277-32321958 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010112 range=chr16:32302277-32321958 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 32302277	 32302988	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18499_PI429285431	6.4413004	P	6.841654	P	0.757672557343844	0	lncRNA	20214-3_{6001..7406}	lnc-SHROOM4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHROOM4-1:2	chrX	 50219033	 50220438	-	lnc-SHROOM4-1	lnc-SHROOM4-1:2	ENSG00000204466	DGKK	DGKK	NA	chrX:50203033-50213721	inner
CUST_39267_PI429285431	1.1501161	A	0.8908565	A	1.19686430882564	0	lncRNA	40238-1_{1..2895}	n386183|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010cxq.1||1.7608800|-0.1398497	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n386183|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010cxq.1||1.7608800|-0.1398497	chr17	 39782578	 39785472	-	NA	NA	NA	NA	KRT17	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70chr17:39775692-39780882"	NA	inter
LNCA_21_P0003731	0.88960254	A	0.88763535	A	1.00136448226211	0	lncRNA	TCONS_00008451	NA	NA	NA	NA	XLOC_003910	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003910), lincRNA [TCONS_00008451]"	chr4:25554633-25554574	hs|4p15.2	Agilent_HUMAN_G3V2	TCONS_00008451	TCONS_00008451	chr4	 25554574	 25554633	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41572_PI429285431	3.86151	P	3.2910175	P	1.48503043635354	0	lncRNA	42891-1_{1..95}	ENST00000384997 ncrna:miRNA chromosome:GRCh37:1:1102484:1102578:1 gene:ENSG00000207730 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384997 ncrna:miRNA chromosome:GRCh37:1:1102484:1102578:1 gene:ENSG00000207730 gene_biotype:miRNA transcript_biotype:miRNA	chr1	  1102484	  1102578	+	ENSG00000207730	ENST00000384997	NA	NA	TTLL10	NA	chr1:1109286-1112578	inter
CUST_39745_PI429285431	2.0967674	A	1.3450944	A	1.68374422796436	0	lncRNA	40668-2_{3001..3311}	n405870|NR_003092|lncRNA|Homosapiens||RefGeneNoncode|NR_003092||3.6486300|-0.2794764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405870|NR_003092|lncRNA|Homosapiens||RefGeneNoncode|NR_003092||3.6486300|-0.2794764	chr2	 11587500	 11587810	-	NA	NA	NA	NA	E2F6	NA	chr2:11584501-11606297	inner
CUST_1489_PI429285431	0.91892815	A	1.2257605	A	0.808414806099282	0	lncRNA	1476-1_{1..679}	"transcript_id ""ENST00000460324.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000460324.1"" | genecode_v17"	chr3	147913516	147914194	-	ENSG00000243347.1	ENST00000460324.1	RP11-501O2.4	RP11-501O2.4-001	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10"	NA	inter
LNCA_21_P0005755	0.89109284	A	0.89484197	A	0.997404674805867	0	lncRNA	TCONS_00014838	NA	NA	NA	NA	XLOC_006905	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006905), lincRNA [TCONS_00014838]"	chr8:117627458-117627517	hs|8q23.3	Agilent_HUMAN_G3V2	TCONS_00014838	TCONS_00014838	chr8	117627458	117627517	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43917_PI429285431	0.8832592	A	2.2289875	A	0.393455314387238	0	lncRNA	48630-1_{1..2454}	"gi|333360909|ref|NR_038231.1| Homo sapiens uncharacterized LOC284998 (LOC284998), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|333360909|ref|NR_038231.1| Homo sapiens uncharacterized LOC284998 (LOC284998), non-coding RNA"	Chr2	105363095	105365548	-	284998	NR_038231.1	NA	NA	NA	NA	NA	inter
CUST_11058_PI429285431	0.88335764	A	0.8874672	A	0.997155523284553	0	lncRNA	12608-1_{1..364}	lnc-SLITRK6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK6-1:2	chr13	 86215835	 86216198	-	lnc-SLITRK6-1	lnc-SLITRK6-1:2	XLOC_010681	linc-SLITRK1-1	NA	NA	NA	inter
CUST_24919_PI429285431	4.3594227	P	4.1410465	P	1.16342337856811	0	lncRNA	26460-1_{1..547}	lnc-EIF6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF6-1:2	chr20	 33865849	 33866395	-	lnc-EIF6-1	lnc-EIF6-1:2	ENSG00000126005.10	MT1P3	MMP24	NA	chr20:33855849-33864804	inter
LNCA_21_P0007633	0.894043	A	0.89129686	A	1.00190529196496	0	lncRNA	TCONS_00020577	NA	NA	NA	NA	XLOC_009893	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009893), lincRNA [TCONS_00020577]"	chr12:115542828-115542887	hs|12q24.21	Agilent_HUMAN_G3V2	TCONS_00020577	TCONS_00020577	chr12	115542828	115542887	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007846	1.7959694	A	1.1430775	A	1.57231676741316	0	lncRNA	TCONS_00020536	NA	NA	NA	NA	XLOC_009850	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009850), lincRNA [TCONS_00020536]"	chr12:98110545-98110604	hs|12q23.1	Agilent_HUMAN_G3V2	TCONS_00020536	TCONS_00020536	chr12	 98110545	 98110604	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005154	0.89463955	A	0.8918458	A	1.00193835612383	0	lncRNA	TCONS_00012648	NA	NA	NA	NA	XLOC_005589	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005589), lincRNA [TCONS_00012648]"	chr6:4342044-4341985	hs|6p25.1	Agilent_HUMAN_G3V2	TCONS_00012648	TCONS_00012648	chr6	  4341985	  4342044	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16296_PI429285431	0.89076614	A	1.6375542	A	0.595928826146667	0	lncRNA	18002-1_{1..1388}	lnc-ERP44-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERP44-3:4	chr9	102582103	102583490	-	lnc-ERP44-3	lnc-ERP44-3:4	XLOC_007808	linc-ALG2-5	NR4A3	NA	chr9:102584137-102592128	inter
CUST_36576_PI429285431	1.2855248	A	1.3344531	A	0.966654137279587	0	lncRNA	37770-2_{3001..6000}	n345072|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_621|NULL|-1.7149800|-0.3925604	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345072|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_621|NULL|-1.7149800|-0.3925604	chrX	 93595259	 93598258	-	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	inter
CUST_23172_PI429285431	6.1323576	P	6.0716505	P	1.04297682394884	0	lncRNA	24744-1_{1..366}	lnc-TPCN2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TPCN2-3:1	chr11	 68772457	 68772822	+	lnc-TPCN2-3	lnc-TPCN2-3:1	ENSG00000261276.1	RP11-554A11.5	MRGPRF	NA	chr11:68771862-68780850	inner
CUST_38226_PI429285431	2.890949	A	2.8320096	A	1.04169967178708	0	lncRNA	39289-1_{1..1565}	n381621|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001mqu.1||-1.2172500|-0.4105201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381621|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001mqu.1||-1.2172500|-0.4105201	chr11	 26524764	 26526328	+	NA	NA	NA	NA	ANO3	NA	chr11:26514764-26536329	inner
LNCA_21_P0012385	3.6119936	P	4.025824	P	0.750627785693064	0	lncRNA	TCONS_l2_00018713	NA	NA	NA	NA	XLOC_l2_009804	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009804), lincRNA [TCONS_l2_00018713]"	chr3:101426799-101426858	hs|3q12.3	Agilent_HUMAN_G3V2	TCONS_l2_00018713	TCONS_l2_00018713	chr3	101426799	101426858	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45817_PI429285431	1.6745087	A	2.0916214	A	0.748921960875417	0	lncRNA	50152-1_{1..3000}	"gi|363543325|ref|NR_045638.1| Homo sapiens CD6 molecule (CD6), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|363543325|ref|NR_045638.1| Homo sapiens CD6 molecule (CD6), transcript variant 4, non-coding RNA"	Chr11	 60739113	 60742112	+	923	NR_045638.1	NA	NA	NA	NA	NA	inter
CUST_6007_PI429285431	2.5528069	A	3.0009909	P	0.732964890964306	0	lncRNA	5932-1_{1..869}	"transcript_id ""ENST00000572036.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000572036.1"" | genecode_v17"	chr17	 78991769	 78992637	-	ENSG00000262873.1	ENST00000572036.1	CTD-2561B21.11	CTD-2561B21.11-001	NA	NA	NA	inter
CUST_27599_PI429285431	4.948426	P	5.4238396	P	0.71926055874707	0	lncRNA	29178-1_{1..767}	n324802|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194140|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194140|-1.3631600|-0.3650943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324802|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194140|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194140|-1.3631600|-0.3650943	chr21	 35040003	 35040769	+	NA	NA	NA	NA	ITSN1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0,hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90chr21:35030003-35052534"	NA	inner
CUST_33382_PI429285431	8.968683	P	9.210047	P	0.845945133000274	0	lncRNA	34960-1_{1..1663}	n340099|BC029291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2556|NULL|5.2591000|-0.0997279	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340099|BC029291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2556|NULL|5.2591000|-0.0997279	chr10	 88414373	 88416035	+	NA	NA	NA	NA	LDB3	NA	chr10:88428206-88436605	inner
CUST_31022_PI429285431	6.6028857	P	6.546039	P	1.04018973064738	0	lncRNA	32811-1_{1..412}	n337227|BC113944|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000387223|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000387223|-1.0234100|-0.1012054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337227|BC113944|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000387223|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000387223|-1.0234100|-0.1012054	chr16	  4851031	  4851442	+	NA	NA	NA	NA	ROGDI	"hg19_refFlat_ROGDI:range=chr16:4847461-48525725'pad=0,hg19_refFlat_ROGDI:range=chr16:4847461-48525725'pad=0 3'pad=0 strand=- repeatMasking=none,-101.50chr16:4846969-4852674"	NA	inner
CUST_13992_PI429285431	4.40774	P	4.4774327	P	0.952840935483058	0	lncRNA	15637-1_{1..701}	lnc-DLL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLL1-3:1	chr6	170475349	170476049	-	lnc-DLL1-3	lnc-DLL1-3:1	XLOC_005945	linc-TCTE3-3	NA	NA	NA	inter
CUST_28170_PI429285431	0.8908205	A	0.8940599	A	0.997757138005449	0	lncRNA	29796-1_{1..469}	n325448|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323246|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323246|-1.1917500|-0.3013574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325448|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323246|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323246|-1.1917500|-0.3013574	chr2	  7729185	  7729653	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47232_PI429285431	0.8915295	A	0.8905958	A	1.00064740099611	0	lncRNA	51307-1_{1..1574}	"gi|223718122|ref|NR_026883.1| Homo sapiens long intergenic non-protein coding RNA 652 (LINC00652), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223718122|ref|NR_026883.1| Homo sapiens long intergenic non-protein coding RNA 652 (LINC00652), transcript variant 1, non-coding RNA"	Chr20	 18768615	 18770188	-	29075	NR_026883.1	NA	NA	NA	NA	NA	inter
CUST_11720_PI429285431	0.891392	A	1.4551215	A	0.67655095444292	0	lncRNA	13298-1_{1..384}	lnc-AC092329.1-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092329.1-2:7	chr19	 23493350	 23493733	-	lnc-AC092329.1-2	lnc-AC092329.1-2:7	XLOC_013275	linc-ZNF99-5	NA	NA	NA	inter
CUST_41314_PI429285431	0.89093107	A	1.2674731	A	0.770281654111548	0	lncRNA	42343-1_{1..73}	ENST00000408090 ncrna:miRNA chromosome:GRCh37:19:54175222:54175294:1 gene:ENSG00000221017 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408090 ncrna:miRNA chromosome:GRCh37:19:54175222:54175294:1 gene:ENSG00000221017 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54175222	 54175294	+	ENSG00000221017	ENST00000408090	NA	NA	NA	NA	NA	inter
CUST_50036_PI429285431	0.9021927	A	1.2079076	A	0.809041212264872	0	lncRNA	53772-1_{1..265}	hg19_lincRNAsTranscripts_TCONS_l2_00027738 range=chr8:43341886-43349897 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027738 range=chr8:43341886-43349897 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 43341886	 43342150	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51259_PI429285431	1.7195988	A	2.7517974	A	0.488964421722489	0	lncRNA	54866-1_{1..1050}	hg19_lincRNAsTranscripts_TCONS_l2_00008958 range=chr15:28951503-28952658 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008958 range=chr15:28951503-28952658 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 28951503	 28952552	-	NA	NA	NA	NA	LOC653720	NA	chr15:28947100-28962658	inter
CUST_33897_PI429285431	2.5903666	A	0.90981877	A	3.20549649227282	0	lncRNA	35441-1_{1..3000}	n340689|AK128316|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3152|NULL|-1.2580500|-0.4240772	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340689|AK128316|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3152|NULL|-1.2580500|-0.4240772	chr5	151186315	151189314	+	NA	NA	NA	NA	G3BP1	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90chr5:151176315-151184915"	NA	inter
CUST_49762_PI429285431	1.1307726	A	1.1581223	A	0.981221193318432	0	lncRNA	53527-1_{1..216}	hg19_lincRNAsTranscripts_TCONS_l2_00025852 range=chr7:45838101-45843944 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025852 range=chr7:45838101-45843944 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 45838101	 45838316	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40032_PI429285431	1.4453249	A	1.1288872	A	1.24525197572346	0	lncRNA	40889-2_{3001..4331}	n407221|NR_026686|lncRNA|Homosapiens||RefGeneNoncode|NR_026686||3.8937900|-0.4040145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407221|NR_026686|lncRNA|Homosapiens||RefGeneNoncode|NR_026686||3.8937900|-0.4040145	chr1	 26441267	 26442597	+	NA	NA	NA	NA	PDIK1L	NA	chr1:26437656-26452034	inner
CUST_25651_PI429285431	0.89546996	A	0.91281915	A	0.988046475724641	0	lncRNA	27181-1_{1..720}	lnc-TMPRSS2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-TMPRSS2-5:2	chr21	 42002584	 42003303	-	lnc-TMPRSS2-5	lnc-TMPRSS2-5:2	ENSG00000233756.1	DSCAM-IT1	DSCAM	NA	chr21:41992584-42012693	inter
CUST_32152_PI429285431	12.26855	P	12.526814	P	0.836093388470068	0	lncRNA	33852-1_{1..936}	n338719|BC031965|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1139|NULL|-1.2225300|-0.1630611	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338719|BC031965|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1139|NULL|-1.2225300|-0.1630611	chr13	 49106975	 49107910	+	NA	NA	NA	NA	RCBTB2	NA	chr13:49096975-49107316	inner
LNCA_21_P0003106	0.9032754	A	0.92323905	A	0.986257553827021	0	lncRNA	TCONS_00006455	NA	NA	NA	NA	XLOC_003065	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003065), lincRNA [TCONS_00006455]"	chr3:23236441-23236382	hs|3p24.3	Agilent_HUMAN_G3V2	TCONS_00006455	TCONS_00006455	chr3	 23236382	 23236441	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15632_PI429285431	2.1500168	A	1.5290737	A	1.53788017596533	0	lncRNA	17320-1_{1..1451}	lnc-ANGPT2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANGPT2-2:4	chr8	  6264049	  6265499	-	lnc-ANGPT2-2	lnc-ANGPT2-2:4	XLOC_006985	linc-CSMD1-1	MCPH1	NA	chr8:6264113-6274055	inter
CUST_47714_PI429285431	1.1983126	A	1.7566502	A	0.679084213568043	0	lncRNA	51677-2_{3001..6000}	"gi|385137091|ref|NR_047629.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 59, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137091|ref|NR_047629.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 59, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047629.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30"	NA	inter
CUST_12529_PI429285431	0.8944587	A	1.0566632	A	0.893658478541569	0	lncRNA	14140-1_{1..2465}	lnc-C10orf31-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf31-6:1	chr10	 10993901	 10996365	-	lnc-C10orf31-6	lnc-C10orf31-6:1	XLOC_008731	linc-KIN-1	NA	NA	NA	inter
CUST_12755_PI429285431	2.2038143	A	2.5184886	A	0.804032487050982	0	lncRNA	14379-1_{1..836}	lnc-CCDC63-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC63-2:6	chr12	111380872	111381707	+	lnc-CCDC63-2	lnc-CCDC63-2:6	XLOC_009879	linc-CUX2-1	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30"	NA	inter
CUST_12943_PI429285431	1.7012134	A	1.8226597	A	0.919265625881045	0	lncRNA	14571-1_{1..437}	lnc-WDR4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR4-4:1	chr21	 44385213	 44385649	-	lnc-WDR4-4	lnc-WDR4-4:1	XLOC_014099	linc-WDR4-2	PKNOX1	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20chr21:44394643-44395473"	NA	inter
CUST_6943_PI429285431	2.7625532	A	1.5958831	A	2.24492943910741	0	lncRNA	6892-1_{1..775}	"transcript_id ""ENST00000434730.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434730.1"" | genecode_v17"	chr22	 21667209	 21667983	+	ENSG00000237407.1	ENST00000434730.1	KB-1183D5.14	KB-1183D5.14-001	RIMBP3B	NA	chr22:21657209-21679193	inter
CUST_39117_PI429285431	6.8712645	P	7.060575	P	0.877024773218446	0	lncRNA	40093-1_{1..2237}	n385688|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bos.2||-1.2020100|-0.2852095	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385688|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bos.2||-1.2020100|-0.2852095	chr9	127420690	127422926	+	NA	NA	NA	NA	NR6A1	NA	chr9:127410690-127432927	inner
CUST_9703_PI429285431	1.5411068	A	1.2585167	A	1.21637671133031	0	lncRNA	11219-1_{1..343}	lnc-CKAP2L-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CKAP2L-1:7	chr2	113399660	113400002	-	lnc-CKAP2L-1	lnc-CKAP2L-1:7	XLOC_002275	linc-RGPD8-2	SLC20A1	NA	chr2:113403434-113409926	inter
CUST_13940_PI429285431	6.390541	P	6.691594	P	0.811659762646736	0	lncRNA	15587-1_{1..454}	lnc-OGFRL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-OGFRL1-2:1	chr6	 72168481	 72168934	+	lnc-OGFRL1-2	lnc-OGFRL1-2:1	XLOC_005343	linc-RIMS1-2	NA	NA	NA	inter
CUST_20175_PI429285431	1.2610381	A	1.2387025	A	1.01560232300254	0	lncRNA	21819-2_{3001..3135}	lnc-TNP1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TNP1-4:1	chr2	217739038	217739172	-	lnc-TNP1-4	lnc-TNP1-4:1	ENSG00000236295.1	AC007563.1	NA	NA	NA	inter
CUST_41858_PI429285431	1.1163024	A	0.90629137	A	1.15669702729844	0	lncRNA	43511-1_{1..80}	ENST00000580922 ncrna:miRNA chromosome:GRCh37:1:85599477:85599556:1 gene:ENSG00000266110 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580922 ncrna:miRNA chromosome:GRCh37:1:85599477:85599556:1 gene:ENSG00000266110 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 85599477	 85599556	+	ENSG00000266110	ENST00000580922	NA	NA	WDR63	NA	chr1:85589477-85598821	inter
CUST_24550_PI429285431	3.778078	P	4.5090704	P	0.602489331353772	0	lncRNA	26100-1_{1..778}	lnc-BBIP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BBIP1-1:1	chr10	112631785	112632562	-	lnc-BBIP1-1	lnc-BBIP1-1:1	ENSG00000203497.2	RP11-313D6.4	PDCD4	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr10:112631553-112641991"	NA	inner
CUST_20455_PI429285431	0.90314615	A	0.9028644	A	1.00019531328928	0	lncRNA	22099-1_{1..1163}	lnc-PPIAL4G-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PPIAL4G-5:2	chr1	143272622	143273784	-	lnc-PPIAL4G-5	lnc-PPIAL4G-5:2	ENSG00000225278.1	BX571672.5	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00"	NA	inter
CUST_19067_PI429285431	1.5218219	A	1.4985538	A	1.0162589796573	0	lncRNA	20758-1_{1..476}	lnc-HDDC2-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HDDC2-5:3	chr6	126066047	126066522	-	lnc-HDDC2-5	lnc-HDDC2-5:3	ENSG00000237742	RP11-624M8.1	HEY2	NA	chr6:126070732-126076174	inter
CUST_18965_PI429285431	0.8918889	A	1.552475	A	0.632621240141009	0	lncRNA	20657-1_{1..1956}	lnc-PLGLB2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLGLB2-2:1	chr2	 87757773	 87759728	+	lnc-PLGLB2-2	lnc-PLGLB2-2:1	ENSG00000250262	AC133644.1	NA	NA	NA	inter
CUST_45597_PI429285431	1.0882028	A	1.4819071	A	0.761172687142691	0	lncRNA	49986-1_{1..2268}	"gi|333805655|ref|NR_038277.1| Homo sapiens uncharacterized LOC100506939 (LOC100506939), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333805655|ref|NR_038277.1| Homo sapiens uncharacterized LOC100506939 (LOC100506939), non-coding RNA"	Chr10	 54056608	 54058875	-	100506939	NR_038277.1	NA	NA	NA	NA	NA	inter
CUST_29914_PI429285431	0.90501684	A	1.2573493	A	0.783316655751452	0	lncRNA	31678-1_{1..217}	n334041|M26638|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195068|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195068|0.5605460|-0.1078626	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334041|M26638|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195068|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195068|0.5605460|-0.1078626	chr17	 42985417	 42985633	-	NA	NA	NA	NA	GFAP	NA	chr17:42982994-42992920	inner
CUST_6124_PI429285431	0.9209234	A	0.9401207	A	0.986781586441931	0	lncRNA	6050-1_{1..487}	"transcript_id ""ENST00000580984.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580984.1"" | genecode_v17"	chr18	 22513451	 22513937	-	ENSG00000264345.1	ENST00000580984.1	RP11-958F21.1	RP11-958F21.1-002	NA	NA	NA	inter
CUST_40534_PI429285431	3.3752363	P	2.6879447	A	1.61025771040699	0	lncRNA	41292-7_{18001..21000}	n409638|NR_034022|lncRNA|Homosapiens||RefGeneNoncode|NR_034022||2.9666000|-0.3061889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n409638|NR_034022|lncRNA|Homosapiens||RefGeneNoncode|NR_034022||2.9666000|-0.3061889	chr7	  7133400	  7136399	-	NA	NA	NA	NA	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.61;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00"	NA	inter
CUST_49951_PI429285431	5.198876	P	4.8372936	P	1.28483437771185	0	lncRNA	53701-1_{1..664}	hg19_lincRNAsTranscripts_TCONS_l2_00026208 range=chr7:128262528-128266584 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026208 range=chr7:128262528-128266584 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	128262528	128263191	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009324	7.275557	P	7.250395	P	1.01759395115277	0	lncRNA	TCONS_00025633	NA	NA	NA	NA	XLOC_012471	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012471), lincRNA [TCONS_00025633]"	chr17:38689188-38689129	hs|17q21.2	Agilent_HUMAN_G3V2	TCONS_00025633	TCONS_00025633	chr17	 38689129	 38689188	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24926_PI429285431	0.9249646	A	2.455912	A	0.346050045608938	0	lncRNA	26466-1_{1..617}	lnc-RBM22-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBM22-2:1	chr5	149994542	149995158	-	lnc-RBM22-2	lnc-RBM22-2:1	ENSG00000253852.1	CTB-140J7.2	SYNPO	NA	chr5:149984542-150004916	inner
CUST_40176_PI429285431	0.8907836	A	1.2833087	A	0.76179509293719	0	lncRNA	41010-1_{1..1795}	n407935|NR_027626|lncRNA|Homosapiens||RefGeneNoncode|NR_027626||6.7493400|-0.2493050	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407935|NR_027626|lncRNA|Homosapiens||RefGeneNoncode|NR_027626||6.7493400|-0.2493050	chr6	 25108200	 25109994	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17137_PI429285431	2.2521398	A	2.4906495	A	0.847620449865374	0	lncRNA	18846-1_{1..858}	lnc-WRNIP1-2:26	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRNIP1-2:26	chr6	  2434628	  2435485	+	lnc-WRNIP1-2	lnc-WRNIP1-2:26	XLOC_005127	linc-WRNIP1-2	NA	NA	NA	inter
CUST_31814_PI429285431	1.4109232	A	0.8906264	A	1.43425028035936	0	lncRNA	33552-1_{1..1613}	n338359|AK130466|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|754|NULL|-0.6940810|-0.2417516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338359|AK130466|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|754|NULL|-0.6940810|-0.2417516	chr14	 69029045	 69030657	+	NA	NA	NA	NA	RAD51B	NA	chr14:69019045-69040658	inner
CUST_18287_PI429285431	3.9407136	P	3.9401739	P	1.00037416151431	0	lncRNA	20018-1_{1..341}	lnc-SLC17A5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC17A5-1:1	chr6	 74405555	 74405895	-	lnc-SLC17A5-1	lnc-SLC17A5-1:1	ENSG00000231652	RP11-553A21.3	CD109	NA	chr6:74405508-74415854	inner
CUST_7420_PI429285431	0.9205406	A	0.90850365	A	1.00837828093495	0	lncRNA	9063-1_{1..2154}	lnc-HNRNPH1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HNRNPH1-2:1	chr5	178951450	178953603	-	lnc-HNRNPH1-2	lnc-HNRNPH1-2:1	ENSG00000251657	ENST00000506689	NA	"hg19_refFlat_C5orf60:range=chr5:179069340-1790720215'pad=0,hg19_refFlat_C5orf60:range=chr5:179069340-1790720215'pad=0 3'pad=0 strand=- repeatMasking=none,-100.40;hg19_refFlat_SPATA31E1:range=chr9:90497807-905037405'pad=0,hg19_refFlat_SPATA31E1:range=chr9:90497807-905037405'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80"	NA	inter
CUST_46977_PI429285431	4.3173056	P	4.869015	P	0.682211320451941	0	lncRNA	51080-1_{1..3000}	"gi|189217871|ref|NR_023359.1| Homo sapiens Cdk5 and Abl enzyme substrate 1 (CABLES1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|189217871|ref|NR_023359.1| Homo sapiens Cdk5 and Abl enzyme substrate 1 (CABLES1), non-coding RNA"	Chr18	 20714528	 20717527	+	91768	NR_023359.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014884	0.89575446	A	1.670305	A	0.584570714204389	0	lncRNA	XR_132799	XR_132799	XR_132799	NA	NA	LOC100653014	uncharacterized LOC100653014	NA	THC2509527	NA	"PREDICTED: Homo sapiens hypothetical LOC100653014 (LOC100653014), miscRNA [XR_132799]"	chr1:93298184-93298125	hs|1p22.1	Agilent_HUMAN_G3V2	XR_132799	XR_132799	chr1	 93298125	 93298184	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3569_PI429285431	5.415674	P	5.6934233	P	0.824876876659618	0	lncRNA	3539-1_{1..697}	"transcript_id ""ENST00000457302.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457302.2"" | genecode_v17"	chr9	139931492	139932188	+	ENSG00000235117.2	ENST00000457302.2	RP11-229P13.20	RP11-229P13.20-001	NPDC1	NA	chr9:139933909-139940676	inter
CUST_11506_PI429285431	1.109519	A	1.2875941	A	0.88388151910138	0	lncRNA	13075-1_{1..985}	lnc-DTNBP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DTNBP1-2:1	chr6	 15757866	 15758850	-	lnc-DTNBP1-2	lnc-DTNBP1-2:1	XLOC_005621	linc-DTNBP1-1	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10"	NA	inter
CUST_29119_PI429285431	6.2053585	P	6.4122252	P	0.86641690660817	0	lncRNA	30854-1_{1..513}	n326619|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021833|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021833|-1.3464900|-0.2492636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326619|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021833|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021833|-1.3464900|-0.2492636	chr1	 48291803	 48292315	+	NA	NA	NA	NA	LOC388630	NA	chr1:48281803-48305035	inner
CUST_125_PI429201921	3.405218	P	4.2474413	P	0.557783320909227	0	lncRNA	118-1_{1..3000}	TC07002208.hg.1	 TCONS_l2_00027081-XLOC_l2_013315 // Broad TUCP // linc-C7orf71-1 chr7:+:26591514-26594895 // chr7 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00027080-XLOC_l2_013315 // Broad TUCP // linc-C7orf71-1 chr7:+:26591457-26594733 // chr7 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00025736-XLOC_l2_013315 // Broad TUCP // linc-C7orf71-1 chr7:+:26591625-26594532 // chr7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr7:+:26591457-26594733	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00027080-XLOC_l2_013315	linc-C7orf71-1	chr7	 26591457	 26594733	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34598_PI429285431	1.1383818	A	1.5547004	A	0.749334302096073	0	lncRNA	36055-1_{1..795}	n341481|BC037250|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3951|NULL|-0.9914270|-0.2834355	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341481|BC037250|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3951|NULL|-0.9914270|-0.2834355	chr8	 31883734	 31884528	+	NA	NA	NA	NA	NRG1	NA	chr8:31873734-31967281	inner
CUST_48303_PI429285431	7.224788	P	8.087303	P	0.549992938218563	0	lncRNA	52161-1_{1..2091}	hg19_lincRNAsTranscripts_TCONS_l2_00000130 range=chr1:16974339-16976909 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000130 range=chr1:16974339-16976909 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16974339	 16976429	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003581	3.8509126	P	4.243111	P	0.76196762187182	0	lncRNA	TCONS_00008003	NA	NA	NA	NA	XLOC_003469	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003469), lincRNA [TCONS_00008003]"	chr4:16357273-16357332	hs|4p15.32	Agilent_HUMAN_G3V2	TCONS_00008003	TCONS_00008003	chr4	 16357273	 16357332	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49233_PI429285431	3.0918624	A	3.1813376	A	0.9398645755977	0	lncRNA	53053-1_{1..1868}	hg19_lincRNAsTranscripts_TCONS_l2_00021491 range=chr4:190700498-190708507 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021491 range=chr4:190700498-190708507 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	190700498	190702365	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10463_PI429285431	0.9280741	A	0.9254299	A	1.00183450041561	0	lncRNA	11989-1_{1..945}	lnc-MITF-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MITF-4:1	chr3	 70668541	 70669485	+	lnc-MITF-4	lnc-MITF-4:1	XLOC_002698	linc-GPR27-2	NA	NA	NA	inter
CUST_30765_PI429285431	3.9249399	P	4.4879303	P	0.676897643732299	0	lncRNA	32550-1_{1..837}	n336603|Z34278|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326960|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326960|1.0912800|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336603|Z34278|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326960|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326960|1.0912800|-1.0000000	chr11	  1212759	  1213595	+	NA	NA	NA	NA	MUC5AC	NA	chr11:1202759-1222364	inter
CUST_37834_PI429285431	0.88857496	A	0.89243376	A	0.997328857526336	0	lncRNA	38925-2_{3001..4276}	n346356|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1906|NULL|-1.3318000|-0.1273038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346356|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1906|NULL|-1.3318000|-0.1273038	chr17	 62777791	 62779066	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4520_PI429285431	1.7408462	A	2.7232995	A	0.506118354472059	0	lncRNA	4468-1_{1..415}	"transcript_id ""ENST00000539532.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539532.1"" | genecode_v17"	chr12	130904080	130904494	-	ENSG00000256064.1	ENST00000539532.1	RP11-117L5.4	RP11-117L5.4-001	RIMBP2	NA	chr12:130894080-130915564	inner
CUST_4154_PI429285431	5.200825	P	5.1455536	P	1.03905455200595	0	lncRNA	4112-1_{1..517}	"transcript_id ""ENST00000399866.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000399866.3"" | genecode_v17"	chr12	  8388478	  8388994	+	ENSG00000215241.3	ENST00000399866.3	RP11-266K4.9	RP11-266K4.9-002	FAM90A1	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.30;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80chr12:8378478-8380214"	NA	inter
LNCA_21_P0004182	0.8887528	A	1.1439261	A	0.837886479682388	0	lncRNA	ENST00000340585	NA	NA	NA	NA	XLOC_005037	NA	ENST00000340585	THC2544916	NA	"BROAD Institute lincRNA (XLOC_005037), lincRNA [TCONS_00009795]"	chr5:142869527-142869468	hs|5q31.3	Agilent_HUMAN_G3V2	ENST00000340585	ENST00000340585	chr5	142869468	142869527	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45976_PI429285431	5.4294195	P	5.4934225	P	0.956606168883199	0	lncRNA	50267-1_{1..2236}	"gi|300796966|ref|NR_034140.1| Homo sapiens long intergenic non-protein coding RNA 612 (LINC00612), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300796966|ref|NR_034140.1| Homo sapiens long intergenic non-protein coding RNA 612 (LINC00612), non-coding RNA"	Chr12	  9208185	  9210420	-	253128	NR_034140.1	NA	NA	NA	NA	NA	inter
CUST_5112_PI429285431	0.89608777	A	0.9067892	A	0.992609776955995	0	lncRNA	5052-1_{1..359}	"transcript_id ""ENST00000568019.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568019.1"" | genecode_v17"	chr15	 24832744	 24833102	+	ENSG00000259905.1	ENST00000568019.1	PWRN1	PWRN1-007	NA	NA	NA	inter
CUST_11643_PI429285431	4.608956	P	4.6705675	P	0.958193213110728	0	lncRNA	13220-1_{1..224}	lnc-RAD23B-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAD23B-10:1	chr9	110574028	110574251	+	lnc-RAD23B-10	lnc-RAD23B-10:1	XLOC_007511	linc-ACTL7A-5	NA	NA	NA	inter
CUST_33246_PI429285431	0.89406157	A	0.9044704	A	0.992811113390258	0	lncRNA	34833-1_{1..581}	n339950|AF086007|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2399|NULL|-0.9569460|-0.1744374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339950|AF086007|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2399|NULL|-0.9569460|-0.1744374	chr10	  5911772	  5912352	-	NA	NA	NA	NA	ANKRD16	NA	chr10:5903689-5922346	inner
CUST_38385_PI429285431	4.5703726	P	4.7271957	P	0.896998140800495	0	lncRNA	39424-1_{1..3000}	n382291|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ysh.1||6.3473700|-0.1314352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382291|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ysh.1||6.3473700|-0.1314352	chr14	106230840	106233839	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2465_PI429285431	4.931715	P	5.0806947	P	0.901888068658759	0	lncRNA	2457-1_{1..398}	"transcript_id ""ENST00000433761.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433761.1"" | genecode_v17"	chr6	  3056124	  3056521	+	ENSG00000229282.1	ENST00000433761.1	RP1-40E16.2	RP1-40E16.2-001	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60"	NA	inter
CUST_41915_PI429285431	3.359469	A	3.654028	P	0.815321520090589	0	lncRNA	43658-1_{1..88}	ENST00000401212 ncrna:miRNA chromosome:GRCh37:20:57393281:57393368:-1 gene:ENSG00000216031 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401212 ncrna:miRNA chromosome:GRCh37:20:57393281:57393368:-1 gene:ENSG00000216031 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 57393281	 57393368	-	ENSG00000216031	ENST00000401212	NA	NA	NA	NA	NA	inter
CUST_22506_PI429285431	0.8830595	A	0.8815818	A	1.0010247883258	0	lncRNA	24093-1_{1..235}	lnc-WDR16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR16-1:1	chr17	  9451754	  9451988	+	lnc-WDR16-1	lnc-WDR16-1:1	ENSG00000263051.1	RP11-565F19.3	STX8	NA	chr17:9441754-9461858	inner
LNCA_21_P0009703	0.89364827	A	1.5154636	A	0.649852709318734	0	lncRNA	TCONS_00026980	NA	NA	NA	NA	XLOC_013029	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013029), lincRNA [TCONS_00026980]"	chr19:29710544-29710603	hs|19q12	Agilent_HUMAN_G3V2	TCONS_00026980	TCONS_00026980	chr19	 29710544	 29710603	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41029_PI429285431	4.22953	P	3.7956471	P	1.35086443374966	0	lncRNA	41688-1_{1..1895}	n411660|NR_040245|lncRNA|Homosapiens||RefGeneNoncode|NR_040245||0.1873090|-0.2699305	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n411660|NR_040245|lncRNA|Homosapiens||RefGeneNoncode|NR_040245||0.1873090|-0.2699305	chr12	 30948614	 30950508	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60"	NA	inter
LNCA_21_P0003655	4.2128067	P	3.2666435	P	1.92674173185876	0	lncRNA	TCONS_00008261	NA	NA	NA	NA	XLOC_003704	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003704), lincRNA [TCONS_00008261]"	chr4:138678643-138678702	hs|4q28.3	Agilent_HUMAN_G3V2	TCONS_00008261	TCONS_00008261	chr4	138678643	138678702	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47656_PI429285431	6.3962836	P	6.354765	P	1.02919660272483	0	lncRNA	51640-1_{1..2132}	"gi|258645156|ref|NR_028477.1| Homo sapiens RNA binding motif protein, X-linked (RBMX), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|258645156|ref|NR_028477.1| Homo sapiens RNA binding motif protein, X-linked (RBMX), transcript variant 4, non-coding RNA"	ChrX	135955605	135957736	-	27316	NR_028477.1	NA	NA	NA	NA	NA	inter
CUST_42203_PI429285431	2.2284095	A	1.5431339	A	1.60800913232385	0	lncRNA	44287-1_{1..81}	ENST00000584268 ncrna:miRNA chromosome:GRCh37:2:88382038:88382118:-1 gene:ENSG00000265003 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584268 ncrna:miRNA chromosome:GRCh37:2:88382038:88382118:-1 gene:ENSG00000265003 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 88382038	 88382118	-	ENSG00000265003	ENST00000584268	NA	NA	SMYD1	NA	chr2:88372038-88392118	inner
CUST_48334_PI429285431	0.8927896	A	1.0616307	A	0.889556964913518	0	lncRNA	52189-1_{1..1099}	hg19_lincRNAsTranscripts_TCONS_l2_00001212 range=chr1:47347875-47351132 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001212 range=chr1:47347875-47351132 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 47347875	 47348973	-	NA	NA	NA	NA	CYP4A11	NA	chr1:47357206-47361132	inter
CUST_18095_PI429285431	0.92915964	A	0.88909155	A	1.02816235106384	0	lncRNA	19830-1_{1..290}	lnc-CDH6-2:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH6-2:15	chr5	 29176999	 29177288	+	lnc-CDH6-2	lnc-CDH6-2:15	XLOC_004325	linc-CDH6-3	NA	NA	NA	inter
LNCA_21_P0002152	0.8976201	A	0.89456	A	1.00212335081051	0	lncRNA	TCONS_00003527	NA	NA	NA	NA	XLOC_001300	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001300), lincRNA [TCONS_00003527]"	chr2:210999-211058	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00003527	TCONS_00003527	chr2	   210999	   211058	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28639_PI429285431	4.5840664	P	4.864932	P	0.823097020586914	0	lncRNA	30330-1_{1..380}	n326017|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047566|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047566|-0.7506110|-0.4341724	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326017|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047566|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047566|-0.7506110|-0.4341724	chr10	 35548827	 35549206	-	NA	NA	NA	NA	CCNY	NA	chr10:35538827-35569532	inner
LNCA_21_P0011878	2.956983	A	3.0408177	P	0.943546353628768	0	lncRNA	TCONS_l2_00014275	NA	NA	NA	NA	XLOC_l2_007788	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007788), lincRNA [TCONS_l2_00014275]"	chr2:225033749-225034612	hs|2q36.1	Agilent_HUMAN_G3V2	TCONS_l2_00014275	TCONS_l2_00014275	chr2	225033749	225034612	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004913	0.89877677	A	0.8956757	A	1.00215180975401	0	lncRNA	TCONS_00011907	NA	NA	NA	NA	XLOC_005406	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005406), lincRNA [TCONS_00011907]"	chr6:103987264-103987323	hs|6q16.3	Agilent_HUMAN_G3V2	TCONS_00011907	TCONS_00011907	chr6	103987264	103987323	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8530_PI429285431	0.9085818	A	1.2267541	A	0.802085368170703	0	lncRNA	10091-1_{1..555}	lnc-FDX1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FDX1-1:4	chr11	110252650	110253204	+	lnc-FDX1-1	lnc-FDX1-1:4	ENSG00000254416	RP11-347E10.1	NA	NA	NA	inter
CUST_52123_PI429285431	2.9203033	A	2.3009794	A	1.53615511374582	0	lncRNA	55648-1_{1..478}	hg19_lincRNAsTranscripts_TCONS_l2_00018162 range=chr22:20339070-20340012 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018162 range=chr22:20339070-20340012 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 20339070	 20339547	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49557_PI429285431	2.5799358	A	1.9133632	A	1.58729755354791	0	lncRNA	53347-1_{1..383}	hg19_lincRNAsTranscripts_TCONS_l2_00024354 range=chr6:100546759-100555634 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024354 range=chr6:100546759-100555634 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	100546759	100547141	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49311_PI429285431	7.667551	P	7.328269	P	1.26512680936765	0	lncRNA	53127-1_{1..495}	hg19_lincRNAsTranscripts_TCONS_l2_00022833 range=chr5:34168950-34179167 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022833 range=chr5:34168950-34179167 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 34168950	 34169444	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001389	3.5246944	P	2.5793338	A	1.92567014513908	0	lncRNA	TCONS_00001209	NA	NA	NA	NA	XLOC_000475	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000475), lincRNA [TCONS_00001209]"	chr1:178676349-178676842	hs|1q25.2	Agilent_HUMAN_G3V2	TCONS_00001209	TCONS_00001209	chr1	178676349	178676842	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29764_PI429285431	5.0686135	P	4.5500336	P	1.43254444539623	0	lncRNA	31526-1_{1..586}	n333453|BC020324|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090080|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090080|2.8120400|-0.0188732	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333453|BC020324|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090080|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090080|2.8120400|-0.0188732	chr14	100705508	100706093	+	NA	NA	NA	NA	YY1	NA	chr14:100705102-100716094	inner
CUST_8996_PI429285431	0.88914174	A	0.91446364	A	0.982601332068654	0	lncRNA	10527-1_{1..3000}	lnc-RP11-1070N10.3.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-1070N10.3.1-2:1	chr14	 95653287	 95656286	+	lnc-RP11-1070N10.3.1-2	lnc-RP11-1070N10.3.1-2:1	ENSG00000244991	ENST00000501260	CLMN	NA	chr14:95648276-95664010	inner
CUST_15417_PI429285431	3.1498315	A	3.472551	P	0.799561272167316	0	lncRNA	17103-2_{3001..4229}	lnc-NCOA3-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCOA3-9:1	chr20	 46703066	 46704294	+	lnc-NCOA3-9	lnc-NCOA3-9:1	XLOC_013547	linc-ARFGEF2-8	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10"	NA	inter
CUST_44584_PI429285431	2.1959665	A	1.6030108	A	1.50833376044538	0	lncRNA	49164-2_{3001..5295}	"gi|293336341|ref|NR_033440.1| Homo sapiens peptidylglycine alpha-amidating monooxygenase (PAM), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|293336341|ref|NR_033440.1| Homo sapiens peptidylglycine alpha-amidating monooxygenase (PAM), transcript variant 6, non-coding RNA"	Chr5	102204527	102206821	+	5066	NR_033440.1	NA	NA	NA	NA	NA	inter
CUST_26342_PI429285431	0.89176846	A	0.89128226	A	1.00033706495282	0	lncRNA	27849-1_{1..542}	lnc-NR2F2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NR2F2-5:1	chr15	 96992774	 96993315	+	lnc-NR2F2-5	lnc-NR2F2-5:1	ENSG00000259534.1	RP11-522B15.7	NA	NA	NA	inter
CUST_49302_PI429285431	2.3369732	A	2.1110277	A	1.16954348193313	0	lncRNA	53120-1_{1..634}	hg19_lincRNAsTranscripts_TCONS_l2_00022789 range=chr5:8446031-8457699 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022789 range=chr5:8446031-8457699 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	  8446031	  8446664	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45416_PI429285431	8.311648	P	7.809187	P	1.41662803642612	0	lncRNA	49841-1_{1..3000}	"gi|396578188|ref|NR_073037.1| Homo sapiens stomatin (STOM), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|396578188|ref|NR_073037.1| Homo sapiens stomatin (STOM), transcript variant 5, non-coding RNA"	Chr9	124101266	124104265	-	2040	NR_073037.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50"	NA	inter
CUST_47272_PI429285431	10.000684	P	9.819476	P	1.13383287091088	0	lncRNA	51343-1_{1..1101}	"gi|115527095|ref|NR_003239.1| Homo sapiens small nucleolar RNA host gene 11 (non-protein coding) (SNHG11), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|115527095|ref|NR_003239.1| Homo sapiens small nucleolar RNA host gene 11 (non-protein coding) (SNHG11), non-coding RNA"	Chr20	 37075297	 37076397	+	128439	NR_003239.1	NA	NA	NA	NA	NA	inter
CUST_36124_PI429285431	1.4321612	A	1.2994063	A	1.09638530745477	0	lncRNA	37412-2_{3001..3557}	n344698|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_247|NULL|-1.3456200|-0.2435945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344698|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_247|NULL|-1.3456200|-0.2435945	chr5	141727980	141728536	+	NA	NA	NA	NA	NA	"hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0,hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70"	NA	inter
LNCA_21_P0005274	1.0705236	A	0.9207524	A	1.10939351709591	0	lncRNA	ENST00000433660	NA	NA	NA	NA	XLOC_006316	NA	ENST00000433660	NA	NA	"BROAD Institute lincRNA (XLOC_006316), lincRNA [TCONS_00013106]"	chr7:157309160-157309535	hs|7q36.3	Agilent_HUMAN_G3V2	ENST00000433660	ENST00000433660	chr7	157309160	157309535	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17233_PI429285431	0.8866831	A	0.89789385	A	0.992259414080533	0	lncRNA	18951-1_{1..687}	lnc-SLITRK6-10:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SLITRK6-10:2	chr13	 89872788	 89873474	-	lnc-SLITRK6-10	lnc-SLITRK6-10:2	XLOC_010684	linc-SLITRK6-3	NA	NA	NA	inter
CUST_41346_PI429285431	0.9011194	A	0.9245386	A	0.983898091884681	0	lncRNA	42415-1_{1..90}	ENST00000385191 ncrna:miRNA chromosome:GRCh37:3:52328235:52328324:-1 gene:ENSG00000207926 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385191 ncrna:miRNA chromosome:GRCh37:3:52328235:52328324:-1 gene:ENSG00000207926 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 52328235	 52328324	-	ENSG00000207926	ENST00000385191	NA	NA	GLYCTK	NA	chr3:52321836-52329272	inter
CUST_12665_PI429285431	9.076383	P	9.069032	P	1.00510832816821	0	lncRNA	14282-1_{1..439}	lnc-NPVF-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NPVF-4:1	chr7	 25607521	 25607959	-	lnc-NPVF-4	lnc-NPVF-4:1	XLOC_006381	linc-NPVF-5	NA	NA	NA	inter
CUST_11650_PI429285431	1.1234671	A	0.9192157	A	1.15208838455588	0	lncRNA	13227-1_{1..546}	lnc-KRTAP10-12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KRTAP10-12-1:1	chr21	 46223662	 46224207	+	lnc-KRTAP10-12-1	lnc-KRTAP10-12-1:1	XLOC_013973	linc-C21orf70-5	SUMO3	NA	chr21:46225532-46234012	inter
CUST_44948_PI429285431	5.551774	P	6.0325727	P	0.716580803108817	0	lncRNA	49460-1_{1..3000}	"gi|410170512|ref|XR_159055.2| PREDICTED: Homo sapiens uncharacterized LOC401357 (LOC401357), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170512|ref|XR_159055.2| PREDICTED: Homo sapiens uncharacterized LOC401357 (LOC401357), misc_RNA"	Chr7	 56876811	 56879810	-	401357	XR_159055.3	NA	NA	NA	NA	NA	inter
CUST_51694_PI429285431	8.958988	P	8.886909	P	1.05123047144923	0	lncRNA	55255-2_{3001..5793}	hg19_lincRNAsTranscripts_TCONS_l2_00011027 range=chr17:81054544-81060433 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011027 range=chr17:81054544-81060433 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 81057544	 81060336	+	NA	NA	NA	NA	METRNL	NA	chr17:81044544-81052592	inter
CUST_6555_PI429285431	5.951716	P	6.2251053	P	0.827373525662743	0	lncRNA	6503-1_{1..598}	"transcript_id ""ENST00000599209.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599209.1"" | genecode_v17"	chr19	 49567516	 49568113	+	ENSG00000268287.1	ENST00000599209.1	CTB-60B18.18	CTB-60B18.18-001	LOC100287526	NA	chr19:49561115-49562018	inter
CUST_957_PI429285431	1.4657394	A	1.5723003	A	0.928799499567826	0	lncRNA	947-1_{1..3000}	"transcript_id ""ENST00000492960.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000492960.2"" | genecode_v17"	chr2	 98081083	 98084082	-	ENSG00000230606.5	ENST00000492960.2	AC159540.1	AC159540.1-001	NA	NA	NA	inter
CUST_35583_PI429285431	2.66945	A	2.2270472	A	1.35886562644436	0	lncRNA	36999-1_{1..3000}	n342719|AL832149|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5221|NULL|0.4297870|-0.3572989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342719|AL832149|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5221|NULL|0.4297870|-0.3572989	chr17	 65066553	 65069552	-	NA	NA	NA	NA	HELZ	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr17:65066554-65083490"	NA	inner
LNCA_21_P0009600	3.6954544	P	3.612562	P	1.05913933833363	0	lncRNA	TCONS_00026596	NA	NA	NA	NA	XLOC_012622	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012622), lincRNA [TCONS_00026596]"	chr18:8974759-8980625	hs|18p11.22	Agilent_HUMAN_G3V2	TCONS_00026596	TCONS_00026596	chr18	  8974759	  8980625	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34299_PI429285431	0.90867454	A	0.9108194	A	0.998514400934723	0	lncRNA	35796-2_{3001..4395}	n341159|AK127348|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3625|NULL|-0.2282470|-0.2490930	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341159|AK127348|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3625|NULL|-0.2282470|-0.2490930	chr11	131610717	131612111	+	NA	NA	NA	NA	NTM	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr11:131597717-131622114"	NA	inner
LNCA_21_P0014385	8.336214	P	8.593302	P	0.836775200390055	0	lncRNA	XR_109552	XR_109552	XR_109552	NA	Hs.594609	LOC100506848	uncharacterized LOC100506848	NA	THC2499695	NA	"PREDICTED: Homo sapiens hypothetical LOC100506848 (LOC100506848), miscRNA [XR_109552]"	chr19:1457728-1457669	hs|19p13.3	Agilent_HUMAN_G3V2	XR_109552	XR_109552	chr19	  1457669	  1457728	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38465_PI429285431	5.444787	P	5.718592	P	0.827135159536782	0	lncRNA	39484-1_{1..2252}	n382924|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ddj.1||8.2464700|-0.0779549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382924|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ddj.1||8.2464700|-0.0779549	chr16	 15226577	 15228828	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21871_PI429285431	1.4332339	A	1.9158813	A	0.715663149357482	0	lncRNA	23481-1_{1..1642}	lnc-KLHL25-10:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL25-10:3	chr15	 86848143	 86849784	-	lnc-KLHL25-10	lnc-KLHL25-10:3	ENSG00000260125.1	RP11-31E22.1	AGBL1	NA	chr15:86838143-86858212	inner
CUST_11295_PI429285431	1.0427749	A	0.90344226	A	1.10139551591205	0	lncRNA	12858-1_{1..249}	lnc-FAM84B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM84B-2:1	chr8	127651215	127651463	-	lnc-FAM84B-2	lnc-FAM84B-2:1	XLOC_007211	linc-FAM84B-6	NA	NA	NA	inter
CUST_25871_PI429285431	1.0994611	A	0.93019664	A	1.12448503390506	0	lncRNA	27392-1_{1..325}	lnc-DMRTA1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-DMRTA1-2:2	chr9	 22687546	 22687870	+	lnc-DMRTA1-2	lnc-DMRTA1-2:2	ENSG00000234840.1	RP11-399D6.2	NA	NA	NA	inter
CUST_39061_PI429285431	5.729521	P	6.038657	P	0.807124984846976	0	lncRNA	40037-1_{1..1716}	n385517|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aaz.1||-1.1713000|-0.2913921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385517|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aaz.1||-1.1713000|-0.2913921	chr9	 38406525	 38408240	-	NA	NA	NA	NA	IGFBPL1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr9:38408991-38418241"	NA	inter
CUST_18314_PI429285431	0.9054322	A	0.9055234	A	0.99993678697516	0	lncRNA	20041-1_{1..466}	lnc-CCDC37-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCDC37-5:2	chr3	125927169	125927634	+	lnc-CCDC37-5	lnc-CCDC37-5:2	ENSG00000246022	ALDH1L1-AS2	NA	NA	NA	inter
CUST_10146_PI429285431	1.1571927	A	1.2451055	A	0.940882975052422	0	lncRNA	11669-1_{1..924}	lnc-RP4-604K5.1.1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP4-604K5.1.1-5:2	chr1	 87837252	 87838175	-	lnc-RP4-604K5.1.1-5	lnc-RP4-604K5.1.1-5:2	XLOC_000901	linc-SEP15-3	NA	NA	NA	inter
CUST_50037_PI429285431	6.940111	P	4.402502	P	5.80625929078274	0	lncRNA	53773-1_{1..1057}	hg19_lincRNAsTranscripts_TCONS_l2_00028185 range=chr8:47490845-47526157 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028185 range=chr8:47490845-47526157 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 47490845	 47491901	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39992_PI429285431	1.5346045	A	1.8365318	A	0.811168030764341	0	lncRNA	40858-1_{1..2928}	n407107|NR_024609|lncRNA|Homosapiens||RefGeneNoncode|NR_024609||9.4388300|-0.1795915	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n407107|NR_024609|lncRNA|Homosapiens||RefGeneNoncode|NR_024609||9.4388300|-0.1795915	chr13	114586609	114589536	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27583_PI429285431	0.8963125	A	1.4544013	A	0.679201335147485	0	lncRNA	29161-1_{1..2088}	n324785|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000195053|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000195053|-1.1499900|-0.2423979	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324785|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000195053|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000195053|-1.1499900|-0.2423979	chr21	 41435296	 41437383	-	NA	NA	NA	NA	DSCAM	NA	chr21:41425296-41451930	inter
CUST_9197_PI429285431	0.9137812	A	0.9483696	A	0.976310261758154	0	lncRNA	10709-1_{1..406}	lnc-CAMK1G-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CAMK1G-1:7	chr1	209606018	209606423	+	lnc-CAMK1G-1	lnc-CAMK1G-1:7	ENSG00000230937	CTA-55I10.1	LOC642587	NA	chr1:209602168-209605894	inter
CUST_41666_PI429285431	2.0109053	A	2.0181613	A	0.994983150694659	0	lncRNA	43092-1_{1..74}	ENST00000585270 ncrna:miRNA chromosome:GRCh37:X:17444004:17444077:1 gene:ENSG00000265465 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585270 ncrna:miRNA chromosome:GRCh37:X:17444004:17444077:1 gene:ENSG00000265465 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 17444004	 17444077	+	ENSG00000265465	ENST00000585270	NA	NA	NHS	NA	chrX:17434004-17454077	inner
CUST_43964_PI429285431	3.6496685	P	3.9705706	P	0.800569134721247	0	lncRNA	48669-1_{1..2290}	"gi|224809444|ref|NR_027313.1| Homo sapiens uncharacterized LOC150527 (TISP43), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224809444|ref|NR_027313.1| Homo sapiens uncharacterized LOC150527 (TISP43), transcript variant 1, non-coding RNA"	Chr2	131328419	131330708	+	150527	NR_027313.1	NA	NA	NA	NA	NA	inter
CUST_31666_PI429285431	5.4141903	P	3.7548003	P	3.15882934952031	0	lncRNA	33416-1_{1..2447}	n338191|AK092640|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|582|NULL|-0.2321460|-0.1758075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338191|AK092640|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|582|NULL|-0.2321460|-0.1758075	chr22	 50922416	 50924862	+	NA	NA	NA	NA	ADM2	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10chr22:50920012-50924866"	NA	inner
LNCA_21_P0007640	3.2732284	P	2.5586076	A	1.64105182455262	0	lncRNA	TCONS_00020590	NA	NA	NA	NA	XLOC_009907	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009907), lincRNA [TCONS_00020590]"	chr12:119305546-119305605	hs|12q24.23	Agilent_HUMAN_G3V2	TCONS_00020590	TCONS_00020590	chr12	119305546	119305605	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7943_PI429285431	3.4724298	P	3.3769693	P	1.06840638282889	0	lncRNA	9554-1_{1..959}	lnc-METTL15-4:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-METTL15-4:10	chr11	 27698529	 27699487	+	lnc-METTL15-4	lnc-METTL15-4:10	ENSG00000245573	AC104563.1	BDNF	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-28.71;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-21.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr11:27688529-27709354"	NA	inter
CUST_51859_PI429285431	6.3896623	P	6.597555	P	0.865800956804994	0	lncRNA	55411-1_{1..261}	hg19_lincRNAsTranscripts_TCONS_l2_00013180 range=chr19:51288913-51289379 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013180 range=chr19:51288913-51289379 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 51288913	 51289173	-	NA	NA	NA	NA	ACPT	NA	chr19:51293672-51298481	inter
CUST_14994_PI429285431	0.8834865	A	0.88661903	A	0.997831051238544	0	lncRNA	16657-1_{1..354}	lnc-TRIB2-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIB2-3:3	chr2	 13353419	 13353772	+	lnc-TRIB2-3	lnc-TRIB2-3:3	XLOC_001356	linc-FAM84A-5	NA	NA	NA	inter
CUST_39564_PI429285431	1.0614998	A	0.9838624	A	1.0552884532039	0	lncRNA	40508-1_{1..3000}	n387524|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011gqr.1||-0.4864140|-0.3228772	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387524|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011gqr.1||-0.4864140|-0.3228772	chr6	  1160982	  1163981	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10"	NA	inter
CUST_13868_PI429285431	0.8908452	A	0.8969507	A	0.995776932224748	0	lncRNA	15512-1_{1..519}	lnc-WRNIP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRNIP1-1:2	chr6	  2640141	  2640659	+	lnc-WRNIP1-1	lnc-WRNIP1-1:2	XLOC_005128	linc-WRNIP1-1	C6orf195	NA	chr6:2630141-2635298	inter
LNCA_21_P0004159	2.2699811	A	2.279459	A	0.99345195284686	0	lncRNA	ENST00000505796	NA	NA	NA	NA	XLOC_004934	NA	ENST00000505796	NA	NA	"BROAD Institute lincRNA (XLOC_004934), lincRNA [TCONS_00009732]"	chr5:96559202-96559143	hs|5q15	Agilent_HUMAN_G3V2	ENST00000505796	ENST00000505796	chr5	 96559143	 96559202	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5717_PI429285431	4.5060987	P	4.6811676	P	0.885725217768368	0	lncRNA	5641-1_{1..465}	"transcript_id ""ENST00000581248.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581248.1"" | genecode_v17"	chr17	  8080130	  8080594	+	ENSG00000266824.1	ENST00000581248.1	RP11-599B13.7	RP11-599B13.7-001	TMEM107	NA	chr17:8076296-8079714	inter
LNCA_21_P0003811	0.8907542	A	0.89201343	A	0.999127549082631	0	lncRNA	TCONS_00008688	NA	NA	NA	NA	XLOC_004203	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004203), lincRNA [TCONS_00008688]"	chr4:185214796-185214737	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00008688	TCONS_00008688	chr4	185214737	185214796	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13171_PI429285431	1.0685999	A	1.8102784	A	0.598043155554114	0	lncRNA	14799-2_{3001..6000}	lnc-ITPR3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITPR3-1:1	chr6	 33885234	 33888233	+	lnc-ITPR3-1	lnc-ITPR3-1:1	XLOC_005263	linc-HMGA1-2	NA	NA	NA	inter
CUST_49275_PI429285431	4.1859255	P	4.869616	P	0.622570662860259	0	lncRNA	53094-1_{1..540}	hg19_lincRNAsTranscripts_TCONS_l2_00022102 range=chr5:92264-113777 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022102 range=chr5:92264-113777 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	    92264	    92803	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23151_PI429285431	0.8954606	A	1.0140404	A	0.921093936369458	0	lncRNA	24722-1_{1..728}	lnc-RP11-503N18.3.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-503N18.3.1-2:3	chr4	  2451661	  2452388	+	lnc-RP11-503N18.3.1-2	lnc-RP11-503N18.3.1-2:3	ENSG00000249391.1	RP11-503N18.2	LOC402160	NA	chr4:2441661-2462083	inner
CUST_7148_PI429285431	0.88313836	A	1.2246969	A	0.789188292965002	0	lncRNA	7084-1_{1..340}	"transcript_id ""ENST00000439472.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439472.1"" | genecode_v17"	chrY	 22669140	 22669479	-	ENSG00000229236.1	ENST00000439472.1	TTTY10	TTTY10-002	NA	NA	NA	inter
CUST_27148_PI429285431	7.666375	P	7.999707	P	0.793701259519481	0	lncRNA	28684-1_{1..420}	n324264|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322539|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322539|-0.7062650|-0.1126370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324264|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322539|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322539|-0.7062650|-0.1126370	chr7	   490269	   490688	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43282_PI429285431	3.1561513	P	4.122531	P	0.511788735841542	0	lncRNA	48100-1_{1..692}	ENST00000431803 havana:sense_intronic chromosome:GRCh37:1:22385690:22390692:1 gene:ENSG00000230068 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,ensembl.GRCh37.72,"	>ENST00000431803 havana:sense_intronic chromosome:GRCh37:1:22385690:22390692:1 gene:ENSG00000230068 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr1	 22385690	 22386381	+	ENSG00000230068	ENST00000431803	NA	NA	CDC42	NA	chr1:22379120-22400692	inner
LNCA_21_P0009758	3.5918992	P	4.470613	P	0.543852073406604	0	lncRNA	TCONS_00027289	NA	NA	NA	NA	XLOC_013291	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013291), lincRNA [TCONS_00027289]"	chr19:30186733-30186674	hs|19q12	Agilent_HUMAN_G3V2	TCONS_00027289	TCONS_00027289	chr19	 30186674	 30186733	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30469_PI429285431	11.452395	P	9.855239	P	3.0254631231137	0	lncRNA	32249-1_{1..811}	n335614|CR598756|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000277951|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000277951|-1.1802700|-0.4391526	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335614|CR598756|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000277951|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000277951|-1.1802700|-0.4391526	chr11	 10818631	 10819441	-	NA	NA	NA	NA	EIF4G2	NA	chr11:10818593-10829442	inner
CUST_18629_PI429285431	3.218767	P	3.130452	P	1.06312777378516	0	lncRNA	20334-1_{1..1043}	lnc-DTHD1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DTHD1-1:2	chr4	 36274857	 36275899	+	lnc-DTHD1-1	lnc-DTHD1-1:2	ENSG00000247193	RP11-431M7.3	DTHD1	NA	chr4:36283244-36285562	inter
LNCA_21_P0013297	0.8888045	A	0.88729906	A	1.00104403611817	0	lncRNA	BC040864	NA	BC040864	NA	Hs.566753	XLOC_l2_013795	NA	NA	THC2523560	NA	"BROAD Institute lincRNA (XLOC_l2_013795), lincRNA [TCONS_l2_00026521]"	chr7:42712458-42712399	hs|7p14.1	Agilent_HUMAN_G3V2	BC040864	BC040864	chr7	 42712399	 42712458	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25198_PI429285431	4.9323506	P	4.9958415	P	0.956945786722869	0	lncRNA	26729-1_{1..448}	lnc-GLUD1-4:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLUD1-4:10	chr10	 89090649	 89091096	-	lnc-GLUD1-4	lnc-GLUD1-4:10	ENSG00000223482.1	RP11-322M19.1	NA	NA	NA	inter
CUST_32591_PI429285431	1.8761891	A	1.6567515	A	1.16427963155071	0	lncRNA	34252-1_{1..2331}	n339210|AK124444|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1642|NULL|-1.1089200|-0.2538716	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339210|AK124444|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1642|NULL|-1.1089200|-0.2538716	chr2	242014095	242016425	-	NA	NA	NA	NA	SNED1	NA	chr2:242004095-242033643	inner
LNCA_21_P0005053	0.88949484	A	0.88759166	A	1.00132005435686	0	lncRNA	ENST00000435802	NA	NA	NA	NA	XLOC_005813	NA	ENST00000435802	NA	NA	"BROAD Institute lincRNA (XLOC_005813), lincRNA [TCONS_00011548]"	chr6:114844734-114844675	hs|6q22.1	Agilent_HUMAN_G3V2	ENST00000435802	ENST00000435802	chr6	114844675	114844734	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9756_PI429285431	3.2023678	P	2.4181025	A	1.72221504903869	0	lncRNA	11273-1_{1..427}	lnc-TMCO5A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMCO5A-1:2	chr15	 38286768	 38287194	+	lnc-TMCO5A-1	lnc-TMCO5A-1:2	XLOC_011213	linc-SPRED1	NA	NA	NA	inter
CUST_23825_PI429285431	7.387368	P	7.3896923	P	0.998390215104147	0	lncRNA	25388-1_{1..563}	lnc-AC105020.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC105020.1-1:1	chr15	 75969451	 75970013	+	lnc-AC105020.1-1	lnc-AC105020.1-1:1	ENSG00000260892.1	CTD-2026K11.1	CSPG4	"hg19_refFlat_CSPG4:range=chr15:75967891-760050965'pad=0,hg19_refFlat_CSPG4:range=chr15:75967891-760050965'pad=0 3'pad=0 strand=- repeatMasking=none,-104.20chr15:75966663-75979503"	NA	inner
CUST_9755_PI429285431	0.904331	A	0.9140841	A	0.993262465882921	0	lncRNA	11272-1_{1..372}	lnc-ZSCAN30-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZSCAN30-1:1	chr18	 32523426	 32523797	-	lnc-ZSCAN30-1	lnc-ZSCAN30-1:1	XLOC_012811	linc-NOL4-3	NA	NA	NA	inter
CUST_25247_PI429285431	2.0429046	A	1.764904	A	1.21251332333175	0	lncRNA	26777-1_{1..494}	lnc-PPP4R2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP4R2-1:1	chr3	 73674563	 73675056	+	lnc-PPP4R2-1	lnc-PPP4R2-1:1	ENSG00000239677.1	PDZRN3-AS1	PDZRN3	NA	chr3:73664563-73674072	inter
CUST_47185_PI429285431	13.7354145	P	13.761566	P	0.982036464433819	0	lncRNA	51261-2_{3001..6000}	"gi|156104867|ref|NR_003699.1| Homo sapiens zinc finger protein 525 (ZNF525), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|156104867|ref|NR_003699.1| Homo sapiens zinc finger protein 525 (ZNF525), non-coding RNA"	Chr19	 53871968	 53874967	+	170958	NR_003699.1	NA	NA	NA	NA	NA	inter
CUST_33119_PI429285431	2.3706837	A	3.1932373	A	0.565440215518273	0	lncRNA	34718-1_{1..3000}	n339807|BX648566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2254|NULL|-1.0235800|-0.4617904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339807|BX648566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2254|NULL|-1.0235800|-0.4617904	chr18	 19405447	 19408446	-	NA	NA	NA	NA	MIB1	NA	chr18:19395447-19421367	inner
CUST_27110_PI429285431	10.696457	P	10.508928	P	1.13881152608258	0	lncRNA	28643-1_{1..557}	n324222|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326622|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326622|-1.1500100|-0.3245381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324222|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326622|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326622|-1.1500100|-0.3245381	chr7	 22595848	 22596404	+	NA	NA	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50"	NA	inter
CUST_37433_PI429285431	0.89725727	A	1.2610607	A	0.777113144745551	0	lncRNA	38536-1_{1..1216}	n345885|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1434|NULL|-1.5528300|-0.1769186	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345885|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1434|NULL|-1.5528300|-0.1769186	chr12	  9458693	  9459908	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23711_PI429285431	8.823131	P	9.471839	P	0.637851283222281	0	lncRNA	25276-1_{1..2354}	lnc-RPS25-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS25-1:4	chr11	118901559	118903912	-	lnc-RPS25-1	lnc-RPS25-1:4	ENSG00000137700.10	SLC37A4	SLC37A4	NA	chr11:118895061-118901616	inner
CUST_14630_PI429285431	0.9233364	A	0.92916703	A	0.995966671063194	0	lncRNA	16301-1_{1..1851}	lnc-ZNF507-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-ZNF507-4:4	chr19	 32539495	 32541345	+	lnc-ZNF507-4	lnc-ZNF507-4:4	XLOC_013038	linc-ZNF507-4	NA	NA	NA	inter
LNCA_21_P0013058	0.8967274	A	1.0522689	A	0.897795331855464	0	lncRNA	DL491387	NA	DL491387	NA	NA	XLOC_l2_012847	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012847), lincRNA [TCONS_l2_00024572]"	chr6:2854347-2854288	hs|6p25.2	Agilent_HUMAN_G3V2	DL491387	DL491387	chr6	  2854288	  2854347	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20685_PI429285431	3.9426682	P	4.2199364	P	0.825151996785896	0	lncRNA	22321-1_{1..646}	lnc-ZNF862-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:6	chr7	149480989	149481634	+	lnc-ZNF862-1	lnc-ZNF862-1:6	ENSG00000197558.7	SSPO	SSPO	NA	chr7:149473131-149491404	inner
CUST_14085_PI429285431	2.8741972	A	1.8859338	A	1.98379561983559	0	lncRNA	15730-1_{1..568}	lnc-TLR5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TLR5-1:1	chr1	223269126	223269693	-	lnc-TLR5-1	lnc-TLR5-1:1	XLOC_001219	linc-AIDA	NA	NA	NA	inter
CUST_39368_PI429285431	6.6207643	P	4.393166	P	4.68353647242092	0	lncRNA	40332-1_{1..1432}	n386478|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mam.2||-1.0271100|-0.3248498	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386478|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mam.2||-1.0271100|-0.3248498	chr8	 92968729	 92970160	-	NA	NA	NA	NA	RUNX1T1	NA	chr8:92967195-92980161	inner
LNCA_21_P0010466	0.89805067	A	0.89504236	A	1.00208737713948	0	lncRNA	TCONS_00029834	NA	NA	NA	NA	XLOC_014266	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014266), lincRNA [TCONS_00029834]"	chr22:45020026-45020481	hs|22q13.31	Agilent_HUMAN_G3V2	TCONS_00029834	TCONS_00029834	chr22	 45020026	 45020481	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002797	7.5591493	P	7.779441	P	0.858391859754048	0	lncRNA	ENST00000494887	NA	NA	NA	NA	XLOC_002909	NA	ENST00000494887	NA	NA	"BROAD Institute lincRNA (XLOC_002909), lincRNA [TCONS_00007039]"	chr3:167630682-167632663	hs|3q26.2	Agilent_HUMAN_G3V2	ENST00000494887	ENST00000494887	chr3	167630682	167632663	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16561_PI429285431	0.8890848	A	0.8924786	A	0.997650361829975	0	lncRNA	18262-1_{1..858}	lnc-MARCKS-5:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MARCKS-5:17	chr6	114777021	114777878	+	lnc-MARCKS-5	lnc-MARCKS-5:17	XLOC_005441	linc-NT5DC1-3	NA	NA	NA	inter
CUST_15140_PI429285431	3.3907764	P	3.5561848	P	0.891676066861677	0	lncRNA	16802-1_{1..449}	lnc-AC133485.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC133485.1.1-2:1	chr16	 32626742	 32627190	+	lnc-AC133485.1.1-2	lnc-AC133485.1.1-2:1	XLOC_011694	linc-TP53TG3B-8	NA	NA	NA	inter
CUST_35930_PI429285431	0.88726366	A	0.89099026	A	0.997420251003297	0	lncRNA	37294-3_{6001..7268}	n344569|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_117|NULL|-1.3364000|-0.2814666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344569|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_117|NULL|-1.3364000|-0.2814666	chr21	 35309857	 35311124	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21959_PI429285431	2.8454897	A	4.215112	P	0.386992550428253	0	lncRNA	23567-1_{1..449}	lnc-MTERF-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTERF-6:1	chr7	 90226511	 90226959	-	lnc-MTERF-6	lnc-MTERF-6:1	ENSG00000223969.1	AC002456.2	LOC100507508	NA	chr7:90219937-90226630	inter
CUST_35396_PI429285431	3.2882636	P	3.5273645	P	0.847273175816084	0	lncRNA	36806-1_{1..1932}	n342455|AK026947|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4948|NULL|-0.7265810|-0.1509121	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342455|AK026947|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4948|NULL|-0.7265810|-0.1509121	chr16	  2647881	  2649812	-	NA	NA	NA	NA	PDPK1	NA	chr16:2637881-2653189	inner
CUST_12825_PI429285431	0.88881934	A	2.486921	A	0.330311325093876	0	lncRNA	14452-1_{1..963}	lnc-BTN2A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BTN2A1-1:2	chr6	 26476545	 26477507	+	lnc-BTN2A1-1	lnc-BTN2A1-1:2	XLOC_005210	linc-BTN1A1-2	BTN2A1	NA	chr6:26466545-26476849	inter
CUST_13489_PI429285431	1.5792729	A	1.9796138	A	0.757679227141382	0	lncRNA	15129-1_{1..421}	lnc-RPL24-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPL24-2:2	chr3	102392598	102393018	-	lnc-RPL24-2	lnc-RPL24-2:2	XLOC_003194	linc-RPL24-2	NA	NA	NA	inter
CUST_17044_PI429285431	9.024662	P	8.616038	P	1.32741915688226	0	lncRNA	18754-1_{1..561}	lnc-PRR16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRR16-1:1	chr5	120118132	120118692	+	lnc-PRR16-1	lnc-PRR16-1:1	XLOC_004528	linc-FTMT-3	NA	NA	NA	inter
LNCA_21_P0008734	0.9067148	A	0.8959714	A	1.00747455347164	0	lncRNA	TCONS_00023668	NA	NA	NA	NA	XLOC_011469	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011469), lincRNA [TCONS_00023668]"	chr15:48080349-48080290	hs|15q21.1	Agilent_HUMAN_G3V2	TCONS_00023668	TCONS_00023668	chr15	 48080290	 48080349	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8772_PI429285431	0.88940084	A	0.8896183	A	0.99984927957358	0	lncRNA	10315-1_{1..1883}	lnc-MYL4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYL4-2:1	chr17	 45213289	 45215171	+	lnc-MYL4-2	lnc-MYL4-2:1	ENSG00000249938	ENST00000503262	CDC27	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70chr17:45203289-45224095"	NA	inner
CUST_19453_PI429285431	3.0972204	P	3.3647196	P	0.830758353619874	0	lncRNA	21112-1_{1..443}	lnc-EIF4A3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-EIF4A3-1:1	chr17	 77966598	 77967040	-	lnc-EIF4A3-1	lnc-EIF4A3-1:1	ENSG00000262172.1	CTD-2529O21.1	TBC1D16	NA	chr17:77956598-77976640	inner
CUST_46121_PI429285431	6.9773245	P	7.0405903	P	0.957095108163767	0	lncRNA	50381-1_{1..1942}	"gi|387528006|ref|NR_048568.1| Homo sapiens ARP6 actin-related protein 6 homolog (yeast) (ACTR6), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387528006|ref|NR_048568.1| Homo sapiens ARP6 actin-related protein 6 homolog (yeast) (ACTR6), transcript variant 2, non-coding RNA"	Chr12	100594555	100596496	+	64431	NR_048568.1	NA	NA	NA	NA	NA	inter
CUST_22631_PI429285431	7.3851676	P	7.6496754	P	0.832482701929802	0	lncRNA	24217-1_{1..2613}	lnc-SLC25A21-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A21-1:1	chr14	 37127749	 37130361	-	lnc-SLC25A21-1	lnc-SLC25A21-1:1	ENSG00000258661.1	RP11-964E11.2	PAX9	NA	chr14:37126773-37138006	inner
LNCA_21_P0006343	1.1655614	A	1.8805639	A	0.609204076166461	0	lncRNA	TCONS_00016544	NA	NA	NA	NA	XLOC_007304	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007304), lincRNA [TCONS_00016544]"	chr9:24552097-24552156	hs|9p21.3	Agilent_HUMAN_G3V2	TCONS_00016544	TCONS_00016544	chr9	 24552097	 24552156	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9951_PI429285431	0.88994825	A	0.89831245	A	0.994219152129086	0	lncRNA	11474-1_{1..301}	lnc-GNG5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNG5-1:1	chr1	 84943430	 84943730	-	lnc-GNG5-1	lnc-GNG5-1:1	XLOC_000894	linc-TTLL7-3	RPF1	NA	chr1:84944920-84953596	inter
LNCA_19_P00319133	4.677655	P	5.3201795	P	0.640591029223017	0	lncRNA	ENST00000513329	NA	NA	NA	NA	XLOC_004558	NA	ENST00000513329	NA	NA	"BROAD Institute lincRNA (XLOC_004558), lincRNA [TCONS_00009513]"	chr5:133827910-133827969	hs|5q31.1	Agilent_HUMAN_G3V2	ENST00000513329	ENST00000513329	chr5	133827910	133827969	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24728_PI429285431	7.3105364	P	7.831171	P	0.697065146845738	0	lncRNA	26274-1_{1..349}	lnc-CYP11B1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYP11B1-1:1	chr8	143916093	143916441	-	lnc-CYP11B1-1	lnc-CYP11B1-1:1	ENSG00000253728.1	RP11-706C16.5	GML	NA	chr8:143916217-143926356	inner
LNCA_19_P00327297	4.411671	P	4.200856	P	1.15734179895643	0	lncRNA	TCONS_00017433	NA	NA	NA	NA	XLOC_008015	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008015), lincRNA [TCONS_00017433]"	chrX:73072144-73072203	hs|Xq13.2	Agilent_HUMAN_G3V2	TCONS_00017433	TCONS_00017433	chrX	 73072144	 73072203	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51590_PI429285431	4.472121	P	4.040607	P	1.34864813934358	0	lncRNA	55154-1_{1..1165}	hg19_lincRNAsTranscripts_TCONS_l2_00011144 range=chr17:20640243-20648591 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011144 range=chr17:20640243-20648591 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 20640243	 20641407	-	NA	NA	NA	NA	NA	"hg19_refFlat_RPS6KB1:range=chr17:57970546-580241495'pad=0,hg19_refFlat_RPS6KB1:range=chr17:57970546-580241495'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70"	NA	inter
CUST_12521_PI429285431	2.2336311	A	2.5352902	A	0.811318842601164	0	lncRNA	14132-1_{1..625}	lnc-COX10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COX10-1:1	chr17	 14120002	 14120626	+	lnc-COX10-1	lnc-COX10-1:1	XLOC_012115	linc-HS3ST3B1	COX10	NA	chr17:14110002-14111996	inter
CUST_19467_PI429285431	8.337762	P	8.333165	P	1.00319147955011	0	lncRNA	21125-2_{3001..4192}	lnc-TSKU-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TSKU-1:1	chr11	 76514408	 76515599	+	lnc-TSKU-1	lnc-TSKU-1:1	ENSG00000261578.1	RP11-21L23.2	TSKU	NA	chr11:76501408-76509198	inter
CUST_3792_PI429285431	0.8913992	A	1.0240563	A	0.912149939708392	0	lncRNA	3760-1_{1..796}	"transcript_id ""ENST00000594566.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594566.1"" | genecode_v17"	chr10	109604087	109604882	-	ENSG00000229981.2	ENST00000594566.1	RP11-215N21.1	RP11-215N21.1-009	LOC100128304	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70chr10:109673555-109675061"	NA	inter
CUST_36963_PI429285431	4.7970867	P	4.918991	P	0.918973840838183	0	lncRNA	38109-1_{1..276}	n345425|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_974|NULL|-1.5443800|-0.0137885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345425|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_974|NULL|-1.5443800|-0.0137885	chr1	  2378279	  2378554	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005711	0.9108177	A	0.9255073	A	0.989869606807465	0	lncRNA	TCONS_00014736	NA	NA	NA	NA	XLOC_006821	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006821), lincRNA [TCONS_00014736]"	chr8:64655464-64655523	hs|8q12.3	Agilent_HUMAN_G3V2	TCONS_00014736	TCONS_00014736	chr8	 64655464	 64655523	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21709_PI429285431	0.90811324	A	0.91187894	A	0.997393219231346	0	lncRNA	23319-1_{1..372}	lnc-POU5F1B-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POU5F1B-3:3	chr8	127688597	127688968	+	lnc-POU5F1B-3	lnc-POU5F1B-3:3	ENSG00000254286.1	RP11-89K10.1	NA	"hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70"	NA	inter
LNCA_33_P3297525	0.90990376	A	0.98718107	A	0.947844756078746	0	lncRNA	ENST00000433980	XR_132563	XR_132563	NA	Hs.724217	NA	NA	ENST00000433980	THC2492485	NA	"PREDICTED: Homo sapiens ankyrin repeat domain-containing protein 18B-like (LOC100287922), partial miscRNA [XR_132563]"	chr1:143403454-143403513	hs|1q21.1	Agilent_HUMAN_G3V2	ENST00000433980	ENST00000433980	chr1	143403454	143403513	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46976_PI429285431	0.91081196	A	0.90076995	A	1.00698487213614	0	lncRNA	51079-1_{1..2281}	"gi|289666794|ref|NR_033354.1| Homo sapiens zinc finger protein 519 (ZNF519), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|289666794|ref|NR_033354.1| Homo sapiens zinc finger protein 519 (ZNF519), transcript variant 2, non-coding RNA"	Chr18	 14075989	 14078269	-	162655	NR_033354.1	NA	NA	NA	NA	NA	inter
CUST_4333_PI429285431	0.90683734	A	1.3224473	A	0.749702459384755	0	lncRNA	4288-1_{1..554}	"transcript_id ""ENST00000551032.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551032.1"" | genecode_v17"	chr12	 79935986	 79936539	+	ENSG00000257474.1	ENST00000551032.1	RP11-359M6.1	RP11-359M6.1-002	NA	NA	NA	inter
CUST_30728_PI429285431	2.5242414	A	2.549544	A	0.982614477142298	0	lncRNA	32511-1_{1..268}	n336280|Y12528|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325714|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325714|1.7226200|-0.1161270	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336280|Y12528|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325714|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325714|1.7226200|-0.1161270	chr10	 43572707	 43572974	+	NA	NA	NA	NA	RET	NA	chr10:43572517-43606103	inner
CUST_32177_PI429285431	0.90696996	A	0.9236841	A	0.988481492838651	0	lncRNA	33876-1_{1..2239}	n338749|AK092024|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1170|NULL|10.5873000|-0.1333233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338749|AK092024|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1170|NULL|10.5873000|-0.1333233	chr13	 60544077	 60546315	-	NA	NA	NA	NA	DIAPH3	NA	chr13:60534077-60738119	inner
CUST_19654_PI429285431	0.89224017	A	0.9012941	A	0.993743945061048	0	lncRNA	21310-1_{1..501}	lnc-SF3B5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SF3B5-1:1	chr6	144654332	144654832	-	lnc-SF3B5-1	lnc-SF3B5-1:1	ENSG00000225311.1	RP1-91J24.3	UTRN	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90chr6:144644332-144664437"	NA	inner
CUST_46381_PI429285431	1.7336757	A	0.9070666	A	1.77351200993199	0	lncRNA	50598-1_{1..1972}	"gi|115529442|ref|NR_003138.2| Homo sapiens small nucleolar RNA host gene 10 (non-protein coding) (SNHG10), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|115529442|ref|NR_003138.2| Homo sapiens small nucleolar RNA host gene 10 (non-protein coding) (SNHG10), non-coding RNA"	Chr14	 95999249	 96001220	-	283596	NR_003138.3	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-59.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30"	NA	inter
CUST_18596_PI429285431	4.724827	P	5.7054195	P	0.506771571284737	0	lncRNA	20303-1_{1..909}	lnc-MSTO1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MSTO1-1:2	chr1	155533041	155533949	+	lnc-MSTO1-1	lnc-MSTO1-1:2	ENSG00000235919	RP11-29H23.1	ASH1L	"hg19_refFlat_YY1AP1:range=chr1:155629448-1556587675'pad=0,hg19_refFlat_YY1AP1:range=chr1:155629448-1556587675'pad=0 3'pad=0 strand=- repeatMasking=none,-101.90;hg19_refFlat_YY1AP1:range=chr1:155629448-1556582555'pad=0,hg19_refFlat_YY1AP1:range=chr1:155629448-1556582555'pad=0 3'pad=0 strand=- repeatMasking=none,-101.90;hg19_refFlat_YY1AP1:range=chr1:155630644-1556587675'pad=0,hg19_refFlat_YY1AP1:range=chr1:155630644-1556587675'pad=0 3'pad=0 strand=- repeatMasking=none,-101.90chr1:155523041-155532324"	NA	inter
CUST_46922_PI429285431	2.865964	A	2.77136	A	1.06777227897525	0	lncRNA	51037-1_{1..3000}	"gi|289577112|ref|NR_033345.1| Homo sapiens golgi-associated, gamma adaptin ear containing, ARF binding protein 3 (GGA3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|289577112|ref|NR_033345.1| Homo sapiens golgi-associated, gamma adaptin ear containing, ARF binding protein 3 (GGA3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_033345.1	NA	NA	NA	NA	NA	Unknown
CUST_2419_PI429285431	0.89240843	A	0.8989194	A	0.995497108056468	0	lncRNA	2411-1_{1..1864}	"transcript_id ""ENST00000521341.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521341.1"" | genecode_v17"	chr5	164647583	164649446	-	ENSG00000254066.1	ENST00000521341.1	CTB-181F24.1	CTB-181F24.1-001	NA	NA	NA	inter
CUST_13724_PI429285431	0.90448	M	0.9056221	A	0.999208669872044	0	lncRNA	15362-1_{1..278}	lnc-LRRC4C-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC4C-5:1	chr11	 38667873	 38668150	-	lnc-LRRC4C-5	lnc-LRRC4C-5:1	XLOC_009418	linc-RAG2-4	NA	NA	NA	inter
CUST_18461_PI429285431	4.1794457	P	4.8287625	P	0.637582174417065	0	lncRNA	20183-2_{3001..4684}	lnc-WDR60-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR60-4:7	chr7	158821931	158823614	+	lnc-WDR60-4	lnc-WDR60-4:7	ENSG00000231419	AC004863.6	VIPR2	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30chr7:158820866-158832886"	NA	inner
CUST_14416_PI429285431	0.9131655	A	0.92807126	A	0.989721305067118	0	lncRNA	16077-1_{1..1601}	lnc-USP14-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP14-5:5	chr18	    15617	    17217	+	lnc-USP14-5	lnc-USP14-5:5	XLOC_012598	linc-USP14-3	LOC100652790	NA	chr18:11264-12387	inter
CUST_23528_PI429285431	0.88393736	A	0.8885091	A	0.996836126937128	0	lncRNA	25095-1_{1..398}	lnc-FBXL17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXL17-1:1	chr5	108166314	108166711	-	lnc-FBXL17-1	lnc-FBXL17-1:1	ENSG00000250383.1	CTD-2197I11.1	FER	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80chr5:108156314-108176491"	NA	inner
CUST_41005_PI429285431	1.9729872	A	2.290949	A	0.802202406964937	0	lncRNA	41668-1_{1..3000}	n411552|NR_040023|lncRNA|Homosapiens||RefGeneNoncode|NR_040023||1.2811500|-0.2560209	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n411552|NR_040023|lncRNA|Homosapiens||RefGeneNoncode|NR_040023||1.2811500|-0.2560209	chr16	  2708389	  2711388	-	NA	NA	NA	NA	KCTD5	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr16:2732495-2733440"	NA	inter
CUST_12284_PI429285431	0.89040405	A	0.8927863	A	0.998350112692099	0	lncRNA	13893-1_{1..822}	lnc-EVX1-5:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EVX1-5:7	chr7	 27228220	 27229041	+	lnc-EVX1-5	lnc-EVX1-5:7	XLOC_006025	linc-EVX1-2	HOXA10	NA	chr7:27218220-27219880	inter
CUST_1229_PI429285431	1.1363988	A	1.9604472	A	0.564854657040402	0	lncRNA	1221-1_{1..690}	"transcript_id ""ENST00000604818.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604818.1"" | genecode_v17"	chr2	214017694	214018383	+	ENSG00000270659.1	ENST00000604818.1	RP11-105N14.1	RP11-105N14.1-001	IKZF2	NA	chr2:214007694-214016333	inter
CUST_11768_PI429285431	0.8995663	A	0.9069124	A	0.994921013389115	0	lncRNA	13347-2_{3001..4943}	lnc-POLR2F-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLR2F-1:1	chr22	 38440075	 38442017	+	lnc-POLR2F-1	lnc-POLR2F-1:1	XLOC_014237	linc-PICK1	NA	NA	NA	inter
CUST_45173_PI429285431	5.671015	P	3.9324985	P	3.33691861344024	0	lncRNA	49648-1_{1..3000}	"gi|229577146|ref|NR_027638.1| Homo sapiens ADAM metallopeptidase domain 9 (ADAM9), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|229577146|ref|NR_027638.1| Homo sapiens ADAM metallopeptidase domain 9 (ADAM9), transcript variant 3, non-coding RNA"	Chr8	 38854505	 38857504	+	8754	NR_027638.1	NA	NA	NA	NA	NA	inter
CUST_157_PI429201921	2.7507224	A	1.6344573	A	2.1678502467676	0	lncRNA	136-2_{3001..4106}	TC07002181.hg.1	 TCONS_l2_00025702-XLOC_l2_013301 // Broad TUCP // linc-MACC1-BP chr7:+:20257234-20261236 // chr7 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00027065-XLOC_l2_013301 // Broad TUCP // linc-MACC1-BP chr7:+:20257215-20261135 // chr7 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00027064-XLOC_l2_013301 // Broad TUCP // linc-MACC1-BP chr7:+:20257214-20259207 // chr7 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00027063-XLOC_l2_013301 // Broad TUCP // linc-MACC1-BP chr7:+:20257208-20261315 // chr7 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00025703-XLOC_l2_013301 // Broad TUCP // linc-MACC1-BP chr7:+:20257420-20261314 // chr7 // 100 // 100 // 0 // --- // 0/// TCONS_l2_00025701-XLOC_l2_013301 // Broad TUCP // linc-MACC1-BP chr7:+:20257233-20261304 // chr7 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr7:+:20257208-20261315	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00027063-XLOC_l2_013301	linc-MACC1-BP	chr7	 20257208	 20261315	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11691_PI429285431	0.8909842	A	0.8982943	A	0.994945840259901	0	lncRNA	13269-1_{1..950}	lnc-SLC25A48-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A48-2:5	chr5	135162155	135163104	+	lnc-SLC25A48-2	lnc-SLC25A48-2:5	XLOC_004565	linc-SLC25A48-1	SLC25A48	NA	chr5:135170365-135172255	inter
LNCA_21_P0010272	0.89263886	A	0.8948902	A	0.998440706989097	0	lncRNA	TCONS_00029087	NA	NA	NA	NA	XLOC_014019	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014019), lincRNA [TCONS_00029087]"	chr21:22108418-22108359	hs|21q21.1	Agilent_HUMAN_G3V2	TCONS_00029087	TCONS_00029087	chr21	 22108359	 22108418	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32538_PI429285431	1.3893735	A	1.5589724	A	0.889089832749728	0	lncRNA	34204-1_{1..2190}	n339151|AK097321|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1581|NULL|-1.0396500|-0.1218566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339151|AK097321|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1581|NULL|-1.0396500|-0.1218566	chr2	220311634	220313823	-	NA	NA	NA	NA	SPEG	"hg19_refFlat_SPEG:range=chr2:220299700-2203575085'pad=0,hg19_refFlat_SPEG:range=chr2:220299700-2203575085'pad=0 3'pad=0 strand=+ repeatMasking=none,-111.90chr2:220301634-220323823"	NA	inner
LNCA_21_P0012770	0.8919452	A	0.89390814	A	0.998640318878519	0	lncRNA	TCONS_l2_00021841	NA	NA	NA	NA	XLOC_l2_011076	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011076), lincRNA [TCONS_l2_00021841]"	chr4:22060730-21951058	hs|4p15.2	Agilent_HUMAN_G3V2	TCONS_l2_00021841	TCONS_l2_00021841	chr4	 21951058	 22060730	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001348	2.0206978	A	2.8622596	A	0.558039132608565	0	lncRNA	TCONS_00001047	NA	NA	NA	NA	XLOC_000308	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000308), lincRNA [TCONS_00001047]"	chr1:95787107-95787166	hs|1p21.3	Agilent_HUMAN_G3V2	TCONS_00001047	TCONS_00001047	chr1	 95787107	 95787166	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009806	0.89076227	A	0.89217436	A	0.999021692652773	0	lncRNA	TCONS_00027759	NA	NA	NA	NA	XLOC_013350	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013350), lincRNA [TCONS_00027759]"	chr19:44387879-44387820	hs|19q13.31	Agilent_HUMAN_G3V2	TCONS_00027759	TCONS_00027759	chr19	 44387820	 44387879	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20792_PI429285431	3.2771776	P	3.6488998	P	0.772859354248338	0	lncRNA	22425-1_{1..576}	lnc-FSHB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FSHB-1:1	chr11	 29903029	 29903604	+	lnc-FSHB-1	lnc-FSHB-1:1	ENSG00000254734.1	CTD-3138F19.1	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40"	NA	inter
LNCA_21_P0003207	10.42283	P	11.016711	P	0.662558157056647	0	lncRNA	TCONS_00006757	NA	NA	NA	NA	XLOC_003387	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003387), lincRNA [TCONS_00006757]"	chr3:194565515-194565456	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00006757	TCONS_00006757	chr3	194565456	194565515	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31053_PI429285431	5.831535	P	5.8023014	P	1.02046987951944	0	lncRNA	32843-1_{1..267}	n337276|BC127933|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389550|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389550|-1.3350600|-0.1038221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337276|BC127933|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389550|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389550|-1.3350600|-0.1038221	chr2	 74726402	 74726668	+	NA	NA	NA	NA	TTC31	NA	chr2:74716402-74721691	inner
CUST_26010_PI429285431	3.501482	P	3.6408617	P	0.907909435419875	0	lncRNA	27529-1_{1..691}	lnc-YPEL5-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YPEL5-3:1	chr2	 30115145	 30115835	+	lnc-YPEL5-3	lnc-YPEL5-3:1	ENSG00000230737.1	AC106870.1	ALK	NA	chr2:30105145-30125220	inner
CUST_206_PI429201921	6.219166	P	6.1007404	P	1.08554956550654	0	lncRNA	164-1_{1..3000}	TC12002317.hg.1	TCONS_l2_00006587-XLOC_l2_002952 // Broad TUCP // linc-CNTN1-1 chr12:+:40959313-40964560 // chr12 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00005598-XLOC_l2_002952 // Broad TUCP // linc-CNTN1-1 chr12:+:40959353-40964628 // chr12 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr12:+:40959313-40964560	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00006587-XLOC_l2_002952	linc-CNTN1-1	chr12	 40959313	 40964560	+	NA	NA	NA	NA	IGSF21	NA	chr1:18702323-18704977	Unknown
CUST_26402_PI429285431	7.6890764	P	7.823404	P	0.911094370376904	0	lncRNA	27909-1_{1..928}	lnc-EFNA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EFNA1-1:1	chr1	155108775	155109702	+	lnc-EFNA1-1	lnc-EFNA1-1:1	ENSG00000250784.1	RP11-540D14.6	EFNA1	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30chr1:155100349-155107386"	NA	inner
CUST_36354_PI429285431	1.220933	A	0.8942665	A	1.25411226466952	0	lncRNA	37578-3_{6001..8999}	n344875|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_424|NULL|-1.4420000|-0.3394417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344875|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_424|NULL|-1.4420000|-0.3394417	chr6	111814355	111817353	+	NA	NA	NA	NA	REV3L	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr6:111798355-111804414"	NA	inter
CUST_42006_PI429285431	0.9201928	A	0.92111	A	0.999364447455122	0	lncRNA	43850-1_{1..97}	ENST00000385235 ncrna:miRNA chromosome:GRCh37:X:49777849:49777945:1 gene:ENSG00000207970 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385235 ncrna:miRNA chromosome:GRCh37:X:49777849:49777945:1 gene:ENSG00000207970 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 49777849	 49777945	+	ENSG00000207970	ENST00000385235	NA	NA	CLCN5	NA	chrX:49767849-49787945	inner
CUST_49232_PI429285431	0.8843335	A	0.88440776	A	0.999948528215089	0	lncRNA	53052-1_{1..1222}	hg19_lincRNAsTranscripts_TCONS_l2_00021489 range=chr4:190628730-190642667 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021489 range=chr4:190628730-190642667 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	190628730	190629951	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32443_PI429285431	3.6430914	P	4.3148627	P	0.627735498118243	0	lncRNA	34115-1_{1..1819}	n339041|AK129912|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1470|NULL|-1.1516400|-0.4825519	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339041|AK129912|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1470|NULL|-1.1516400|-0.4825519	chr2	179607320	179609138	-	NA	NA	NA	NA	TTN	NA	chr2:179597320-179619139	inner
CUST_45451_PI429285431	1.4145355	A	0.89098716	A	1.43748643303745	0	lncRNA	49867-2_{3001..3729}	"gi|373938435|ref|NR_046107.1| Homo sapiens uncharacterized LOC401557 (LOC401557), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373938435|ref|NR_046107.1| Homo sapiens uncharacterized LOC401557 (LOC401557), non-coding RNA"	Chr9	138076455	138077183	+	401557	NR_046107.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004365	0.88942116	A	0.88755333	A	1.00129551955965	0	lncRNA	TCONS_00010278	NA	NA	NA	NA	XLOC_004743	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004743), lincRNA [TCONS_00010278]"	chr5:16431096-16431037	hs|5p15.1	Agilent_HUMAN_G3V2	TCONS_00010278	TCONS_00010278	chr5	 16431037	 16431096	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23557_PI429285431	7.2860885	P	7.6871886	P	0.75728061293275	0	lncRNA	25124-1_{1..635}	lnc-AC090186.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC090186.1-3:1	chr8	 53066969	 53067603	+	lnc-AC090186.1-3	lnc-AC090186.1-3:1	ENSG00000254314.1	RP11-26M5.3	ST18	NA	chr8:53056969-53077452	inner
CUST_15956_PI429285431	0.88505393	A	0.8849693	A	1.00005866276648	0	lncRNA	17653-1_{1..3000}	lnc-SNRPB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNRPB2-1:1	chr20	 16618897	 16621896	+	lnc-SNRPB2-1	lnc-SNRPB2-1:1	XLOC_013467	linc-SNRPB2-1	NA	NA	NA	inter
CUST_45277_PI429285431	0.88350743	A	1.4319887	A	0.683739524589574	0	lncRNA	49725-1_{1..1276}	"gi|222352105|ref|NR_026706.1| Homo sapiens uncharacterized LOC286094 (LOC286094), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|222352105|ref|NR_026706.1| Homo sapiens uncharacterized LOC286094 (LOC286094), non-coding RNA"	Chr8	136246374	136247649	+	286094	NR_026706.1	NA	NA	NA	NA	NA	inter
CUST_3872_PI429285431	4.700519	P	3.708678	P	1.9887211475116	0	lncRNA	3841-1_{1..422}	"transcript_id ""ENST00000529082.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000529082.1"" | genecode_v17"	chr11	 19321549	 19321970	+	ENSG00000255160.1	ENST00000529082.1	RP11-428C19.5	RP11-428C19.5-002	NA	NA	NA	inter
CUST_5728_PI429285431	0.89068824	A	0.89858764	A	0.994539516098878	0	lncRNA	5652-1_{1..2953}	"transcript_id ""ENST00000313495.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000313495.2"" | genecode_v17"	chr17	 12453099	 12456051	+	ENSG00000179136.2	ENST00000313495.2	LINC00670	LINC00670-001	NA	NA	NA	inter
LNCA_21_P0005753	0.8943324	A	1.4497877	A	0.680442283641224	0	lncRNA	TCONS_00014836	NA	NA	NA	NA	XLOC_006904	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006904), lincRNA [TCONS_00014836]"	chr8:117544899-117544958	hs|8q23.3	Agilent_HUMAN_G3V2	TCONS_00014836	TCONS_00014836	chr8	117544899	117544958	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45685_PI429285431	6.2950077	P	6.81245	P	0.698609274159558	0	lncRNA	50058-1_{1..2407}	"gi|223972642|ref|NR_026941.1| Homo sapiens cancer susceptibility candidate 2 (non-protein coding) (CASC2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223972642|ref|NR_026941.1| Homo sapiens cancer susceptibility candidate 2 (non-protein coding) (CASC2), transcript variant 3, non-coding RNA"	Chr10	119806332	119808738	+	255082	NR_026941.1	NA	NA	NA	NA	NA	inter
CUST_11832_PI429285431	0.8942356	A	1.0193537	A	0.916928979700692	0	lncRNA	13413-2_{3001..3980}	lnc-TECRL-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TECRL-1:2	chr4	 64342712	 64343691	-	lnc-TECRL-1	lnc-TECRL-1:2	XLOC_003970	linc-IGFBP7-11	NA	NA	NA	inter
CUST_8689_PI429285431	0.88487744	A	0.88419646	A	1.00047213078569	0	lncRNA	10237-1_{1..1111}	lnc-CDK5R1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK5R1-3:1	chr17	 30930937	 30932047	+	lnc-CDK5R1-3	lnc-CDK5R1-3:1	ENSG00000250818	ENST00000511192	MYO1D	NA	chr17:30920937-30940965	inner
CUST_6747_PI429285431	2.7634604	A	2.650301	A	1.08159425970152	0	lncRNA	6695-1_{1..477}	"transcript_id ""ENST00000433121.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433121.1"" | genecode_v17"	chr20	 61004604	 61005080	+	ENSG00000233017.1	ENST00000433121.1	RP5-908M14.5	RP5-908M14.5-001	C20orf151	NA	chr20:60994604-61002629	inter
LNCA_21_P0009813	2.171773	A	1.3549403	A	1.76153446266663	0	lncRNA	BC037891	NA	BC037891	NA	Hs.158149	XLOC_013583	NA	NA	THC2602543	NA	"BROAD Institute lincRNA (XLOC_013583), lincRNA [TCONS_00027871]"	chr20:55857992-55858051	hs|20q13.31	Agilent_HUMAN_G3V2	BC037891	BC037891	chr20	 55857992	 55858051	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15952_PI429285431	4.0078526	P	3.5542085	A	1.36949509606437	0	lncRNA	17649-1_{1..820}	lnc-AJAP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AJAP1-1:2	chr1	  4653112	  4653931	+	lnc-AJAP1-1	lnc-AJAP1-1:2	XLOC_000035	linc-AJAP1-1	NA	NA	NA	inter
CUST_14962_PI429285431	0.8856703	A	1.0118512	A	0.916253748116818	0	lncRNA	16625-1_{1..613}	lnc-TNFRSF19-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFRSF19-5:1	chr13	 24060374	 24060986	+	lnc-TNFRSF19-5	lnc-TNFRSF19-5:1	XLOC_010309	linc-TNFRSF19-4	NA	NA	NA	inter
CUST_31020_PI429285431	7.6681957	P	7.6879463	P	0.986403210172643	0	lncRNA	32809-1_{1..251}	n337225|BC113885|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000387209_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000387209_04|-0.8938320|-0.1071136	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337225|BC113885|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000387209_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000387209_04|-0.8938320|-0.1071136	chr17	 43596137	 43596387	+	NA	NA	NA	NA	NA	"hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0,hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0,hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0,hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0 3'pad=0 strand=- repeatMasking=none,-92.90;hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0,hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0 3'pad=0 strand=- repeatMasking=none,-92.90;hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0,hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90"	NA	inter
CUST_43400_PI429285431	8.127289	P	7.1674247	P	1.94512692744012	0	lncRNA	48213-1_{1..2388}	"gi|300360555|ref|NR_034035.1| Homo sapiens serine/arginine-rich splicing factor 10 (SRSF10), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300360555|ref|NR_034035.1| Homo sapiens serine/arginine-rich splicing factor 10 (SRSF10), transcript variant 7, non-coding RNA"	Chr1	 24292935	 24295322	-	10772	NR_034035.1	NA	NA	NA	NA	NA	inter
CUST_33230_PI429285431	4.103546	P	4.1936183	P	0.939475666642301	0	lncRNA	34818-1_{1..2222}	n339928|AK127565|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2377|NULL|2.0895500|-0.2068217	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339928|AK127565|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2377|NULL|2.0895500|-0.2068217	chr18	 74331733	 74333954	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28716_PI429285431	0.9012824	A	0.90599287	A	0.996740275476405	0	lncRNA	30416-1_{1..372}	n326106|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046492|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046492|-1.2885200|-0.4534808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326106|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046492|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046492|-1.2885200|-0.4534808	chr10	  3567303	  3567674	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004953	3.839394	P	3.8399093	P	0.99964288503859	0	lncRNA	TCONS_00011980	NA	NA	NA	NA	XLOC_005490	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005490), lincRNA [TCONS_00011980]"	chr6:143845466-143845525	hs|6q24.2	Agilent_HUMAN_G3V2	TCONS_00011980	TCONS_00011980	chr6	143845466	143845525	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24255_PI429285431	0.9112351	A	1.6105067	A	0.61588308041453	0	lncRNA	25806-1_{1..920}	lnc-HSFY2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-HSFY2-3:2	chrY	 21238931	 21239850	-	lnc-HSFY2-3	lnc-HSFY2-3:2	ENSG00000176728.3	TTTY14	NA	NA	NA	inter
CUST_19466_PI429285431	11.570908	P	11.12719	P	1.36010497009619	0	lncRNA	21125-1_{1..3000}	lnc-TSKU-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TSKU-1:1	chr11	 76511408	 76514407	+	lnc-TSKU-1	lnc-TSKU-1:1	ENSG00000261578.1	RP11-21L23.2	TSKU	NA	chr11:76501408-76509198	inter
CUST_11292_PI429285431	2.6112747	A	2.514445	A	1.06942084282726	0	lncRNA	12853-1_{1..1031}	lnc-DLK1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLK1-6:1	chr14	101363930	101364960	+	lnc-DLK1-6	lnc-DLK1-6:1	XLOC_010932	linc-DIO3-8	NA	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30"	NA	inter
CUST_29446_PI429285431	10.56568	P	9.808802	P	1.6898298640845	0	lncRNA	31202-1_{1..540}	n332847|AF075034|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066056|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066056|-0.9857410|-0.4537902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332847|AF075034|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066056|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066056|-0.9857410|-0.4537902	chrX	 65486696	 65487235	+	NA	NA	NA	NA	HEPH	NA	chrX:65476696-65487231	inner
LNCA_21_P0001940	3.060316	P	6.0908113	P	0.122385513104851	0	lncRNA	XR_108399	XR_108399	XR_108399	NA	Hs.599655	LOC100506798	uncharacterized LOC100506798	NA	THC2643018	NA	"PREDICTED: Homo sapiens hypothetical LOC100506798 (LOC100506798), miscRNA [XR_108399]"	chr2:177043654-177043713	hs|2q31.1	Agilent_HUMAN_G3V2	XR_108399	XR_108399	chr2	177043654	177043713	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9228_PI429285431	6.5619154	P	6.1452427	P	1.33484543646595	0	lncRNA	10738-2_{3001..4533}	lnc-CALHM3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALHM3-2:1	chr10	105410652	105412184	-	lnc-CALHM3-2	lnc-CALHM3-2:1	ENSG00000245012	ENST00000502138	SH3PXD2A	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40chr10:105397652-105418105"	NA	inner
CUST_167_PI429285431	10.326948	P	10.594797	P	0.83055694997119	0	lncRNA	158-1_{1..2520}	"transcript_id ""ENST00000438002.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000438002.1"" | genecode_v17"	chr1	 17197440	 17199959	+	ENSG00000228549.1	ENST00000438002.1	RP11-108M9.3	RP11-108M9.3-001	NA	NA	NA	inter
CUST_16555_PI429285431	5.3981414	P	5.4913344	P	0.937445679017224	0	lncRNA	18256-1_{1..1681}	lnc-RASA1-3:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASA1-3:12	chr5	 87581558	 87583238	+	lnc-RASA1-3	lnc-RASA1-3:12	XLOC_004457	linc-POLR3G-10	NA	NA	NA	inter
CUST_761_PI429285431	6.583666	P	6.8774934	P	0.815735079765039	0	lncRNA	752-1_{1..321}	"transcript_id ""ENST00000450916.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450916.1"" | genecode_v17"	chr2	 12147300	 12147620	+	ENSG00000224184.1	ENST00000450916.1	AC096559.1	AC096559.1-005	NA	NA	NA	inter
CUST_3204_PI429285431	0.91049916	A	0.90174806	A	1.00608423451231	0	lncRNA	3182-1_{1..545}	"transcript_id ""ENST00000518302.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518302.1"" | genecode_v17"	chr8	 81949199	 81949743	+	ENSG00000254060.1	ENST00000518302.1	RP11-172E10.1	RP11-172E10.1-001	PAG1	NA	chr8:81939199-81963066	inner
CUST_17615_PI429285431	6.8159547	P	8.187273	P	0.386537877951304	0	lncRNA	19339-1_{1..771}	lnc-CLEC18B-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLEC18B-3:6	chr16	 74244205	 74244975	-	lnc-CLEC18B-3	lnc-CLEC18B-3:6	XLOC_012007	linc-ZFHX3-2	NA	NA	NA	inter
CUST_20433_PI429285431	6.91143	P	6.475725	P	1.35257163106416	0	lncRNA	22077-1_{1..529}	lnc-EIF6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF6-1:1	chr20	 33867745	 33868273	-	lnc-EIF6-1	lnc-EIF6-1:1	ENSG00000261582.1	RP4-614O4.11	MMP24	NA	chr20:33857745-33864804	inter
CUST_25668_PI429285431	6.135793	P	5.8421946	P	1.22569361879189	0	lncRNA	27197-1_{1..673}	lnc-MANBA-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MANBA-1:4	chr4	103352219	103352891	-	lnc-MANBA-1	lnc-MANBA-1:4	ENSG00000248161.1	RP11-499E18.1	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-96.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80"	NA	inter
CUST_205_PI429201921	0.8961549	A	0.901744	A	0.996133425616856	0	lncRNA	163-2_{3001..5310}	TC06002636.hg.1	 TCONS_l2_00024098-XLOC_l2_012440 // Broad TUCP // linc-SLC17A4 chr6:+:25732626-25737937 // chr6 // 100 // 100 // 0 // --- // 0///TCONS_l2_00024099-XLOC_l2_012440 // Broad TUCP // linc-SLC17A4 chr6:+:25732626-25737937 // chr6 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr6:+:25732626-25737937	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00024099-XLOC_l2_012440	linc-SLC17A4	chr6	 25732626	 25737937	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36188_PI429285431	2.7517126	A	2.9095354	P	0.896376790897477	0	lncRNA	37451-1_{1..1666}	n344740|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_289|NULL|-1.7812100|-0.2406318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344740|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_289|NULL|-1.7812100|-0.2406318	chr7	    71295	    72960	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30"	NA	inter
CUST_45655_PI429285431	5.276248	P	2.994567	A	4.86244186012863	0	lncRNA	50032-1_{1..2445}	"gi|325652054|ref|NR_028034.2| Homo sapiens Fas (TNF receptor superfamily, member 6) (FAS), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|325652054|ref|NR_028034.2| Homo sapiens Fas (TNF receptor superfamily, member 6) (FAS), transcript variant 5, non-coding RNA"	Chr10	 90750288	 90752732	+	355	NR_028034.2	NA	NA	NA	NA	NA	inter
CUST_39166_PI429285431	2.887372	A	2.396887	A	1.4049170963061	0	lncRNA	40143-1_{1..1796}	n385846|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004fle.3||0.1100170|-0.1807410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385846|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004fle.3||0.1100170|-0.1807410	chrX	153652726	153654521	-	NA	NA	NA	NA	TAZ	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chrX:153642726-153650065"	NA	inter
CUST_23301_PI429285431	0.8935809	A	0.90539545	A	0.991844218310881	0	lncRNA	24872-1_{1..596}	lnc-DOPEY2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DOPEY2-1:1	chr21	 37733972	 37734567	+	lnc-DOPEY2-1	lnc-DOPEY2-1:1	ENSG00000228107.1	AP000692.9	MORC3	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-24.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50chr21:37723972-37744338"	NA	inner
CUST_49129_PI429285431	0.91945475	A	1.1537508	A	0.850099696416586	0	lncRNA	52956-1_{1..216}	hg19_lincRNAsTranscripts_TCONS_l2_00021193 range=chr4:82722514-82723988 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021193 range=chr4:82722514-82723988 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 82722514	 82722729	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41253_PI429285431	0.88555104	A	0.8921004	A	0.995470618310248	0	lncRNA	42210-1_{1..72}	ENST00000583078 ncrna:miRNA chromosome:GRCh37:10:74480787:74480858:1 gene:ENSG00000266719 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583078 ncrna:miRNA chromosome:GRCh37:10:74480787:74480858:1 gene:ENSG00000266719 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 74480787	 74480858	+	ENSG00000266719	ENST00000583078	NA	NA	MCU	NA	chr10:74470787-74490858	inner
CUST_4542_PI429285431	3.1057477	A	3.018472	A	1.0623621852317	0	lncRNA	4490-1_{1..921}	"transcript_id ""ENST00000545517.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000545517.1"" | genecode_v17"	chr12	133180601	133181521	-	ENSG00000204583.5	ENST00000545517.1	LRCOL1	LRCOL1-003	LOC100507055	NA	chr12:133179736-133187037	inner
CUST_37258_PI429285431	0.91993684	A	0.9137411	A	1.00430379454916	0	lncRNA	38365-1_{1..1349}	n345693|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1242|NULL|-1.3160600|-0.3464115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345693|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1242|NULL|-1.3160600|-0.3464115	chr5	 78842537	 78843885	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39074_PI429285431	0.8953402	A	0.9015006	A	0.995739039869207	0	lncRNA	40049-1_{1..3000}	n385559|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aeo.1||2.0328300|-0.1929299	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385559|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aeo.1||2.0328300|-0.1929299	chr9	 67270214	 67273213	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3770_PI429285431	4.275753	P	4.508083	P	0.851258969718665	0	lncRNA	3738-1_{1..418}	"transcript_id ""ENST00000427379.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000427379.2"" | genecode_v17"	chr10	 99588235	 99588652	-	ENSG00000227356.2	ENST00000427379.2	LINC00866	LINC00866-001	GOLGA7B	NA	chr10:99609996-99619555	inter
CUST_8512_PI429285431	1.250559	A	1.2259728	A	1.01718789604796	0	lncRNA	10075-1_{1..3000}	lnc-CLGN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLGN-2:1	chr4	141025895	141028894	-	lnc-CLGN-2	lnc-CLGN-2:1	ENSG00000248331	ENST00000507157	MAML3	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00chr4:141015895-141036668"	NA	inner
CUST_34607_PI429285431	4.3545933	P	4.223583	P	1.09506028885657	0	lncRNA	36062-1_{1..1071}	n341488|AF286164|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3958|NULL|6.8467100|-0.0856789	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341488|AF286164|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3958|NULL|6.8467100|-0.0856789	chr8	 38758828	 38759898	+	NA	NA	NA	NA	PLEKHA2	NA	chr8:38758753-38831431	inner
CUST_38440_PI429285431	0.88798857	A	0.8924868	A	0.996886920270789	0	lncRNA	39466-1_{1..3000}	n382687|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bjf.1||-0.0903248|-0.3610332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382687|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bjf.1||-0.0903248|-0.3610332	chr15	 83509837	 83512836	-	NA	NA	NA	NA	WHAMM	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90chr15:83499837-83503613"	NA	inter
LNCA_21_P0007178	0.90251845	A	2.6759856	A	0.292504930852134	0	lncRNA	TCONS_00019241	NA	NA	NA	NA	XLOC_009072	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009072), lincRNA [TCONS_00019241]"	chr11:14969461-14969520	hs|11p15.2	Agilent_HUMAN_G3V2	TCONS_00019241	TCONS_00019241	chr11	 14969461	 14969520	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23663_PI429285431	0.9002032	A	0.9356606	A	0.975722363327843	0	lncRNA	25228-1_{1..3000}	lnc-OAZ3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OAZ3-3:1	chr1	152014061	152017060	+	lnc-OAZ3-3	lnc-OAZ3-3:1	ENSG00000229021.2	AL591893.1	S100A11	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00chr1:152004982-152009511"	NA	inter
CUST_39655_PI429285431	0.89972156	A	1.1376196	A	0.847979892041371	0	lncRNA	40594-1_{1..2411}	n405259|NR_001280|lncRNA|Homosapiens||RefGeneNoncode|NR_001280||10.2974000|-0.1065929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405259|NR_001280|lncRNA|Homosapiens||RefGeneNoncode|NR_001280||10.2974000|-0.1065929	chr5	140535579	140537989	+	NA	NA	NA	NA	PCDHB1	NA	chr5:140525579-140547990	inter
CUST_7485_PI429285431	0.9210458	A	0.9128667	A	1.00568542111262	0	lncRNA	9125-1_{1..1204}	lnc-TRAF5-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRAF5-5:1	chr1	211827386	211828589	+	lnc-TRAF5-5	lnc-TRAF5-5:1	ENSG00000227764	RP11-354K1.1	NEK2	NA	chr1:211831598-211837923	inter
CUST_36984_PI429285431	3.3517942	P	4.1554537	P	0.572894145571911	0	lncRNA	38129-2_{3001..3837}	n345445|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_994|NULL|-1.6472500|-0.2983984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345445|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_994|NULL|-1.6472500|-0.2983984	chr1	 65520174	 65521010	+	NA	NA	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-30.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80"	NA	inter
CUST_35952_PI429285431	1.2353039	A	0.9022158	A	1.25970690319627	0	lncRNA	37308-6_{15001..16497}	n344583|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_131|NULL|-1.2937000|-0.1534478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344583|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_131|NULL|-1.2937000|-0.1534478	chrX	114972339	114973835	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5737_PI429285431	1.4756253	A	2.6575732	A	0.440755995673398	0	lncRNA	5661-1_{1..2140}	"transcript_id ""ENST00000584683.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584683.1"" | genecode_v17"	chr17	 14230652	 14232791	+	ENSG00000266378.1	ENST00000584683.1	RP11-214O1.3	RP11-214O1.3-001	HS3ST3B1	NA	chr17:14220652-14242791	inner
LNCA_21_P0010764	1.8079966	A	4.2619467	P	0.182510313897469	0	lncRNA	ENST00000424711	NA	NA	NA	NA	XLOC_l2_001011	NA	ENST00000424711	THC2574213	NA	"BROAD Institute lincRNA (XLOC_l2_001011), lincRNA [TCONS_l2_00002574]"	chr1:95197751-95197692	hs|1p21.3	Agilent_HUMAN_G3V2	ENST00000424711	ENST00000424711	chr1	 95197692	 95197751	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26085_PI429285431	0.9257462	A	0.8922903	A	1.02346083819914	0	lncRNA	27598-1_{1..719}	lnc-PARP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PARP1-1:2	chr1	226847288	226848006	-	lnc-PARP1-1	lnc-PARP1-1:2	ENSG00000228382.1	ITPKB-IT1	ITPKB	NA	chr1:226837288-226857371	inner
LNCA_21_P0005772	9.372033	P	9.065996	P	1.23630696739385	0	lncRNA	TCONS_00014874	NA	NA	NA	NA	XLOC_006941	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006941), lincRNA [TCONS_00014874]"	chr8:141475061-141475120	hs|8q24.3	Agilent_HUMAN_G3V2	TCONS_00014874	TCONS_00014874	chr8	141475061	141475120	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22732_PI429285431	5.809032	P	5.734888	P	1.05273622643078	0	lncRNA	24316-1_{1..564}	lnc-MRPL16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPL16-1:1	chr11	 59562093	 59562656	-	lnc-MRPL16-1	lnc-MRPL16-1:1	ENSG00000255453.1	AP000640.8	STX3	NA	chr11:59552093-59572189	inner
CUST_37901_PI429285431	3.3477802	A	4.188777	P	0.558257719245158	0	lncRNA	38990-1_{1..457}	n346439|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1989|NULL|-1.4237100|-0.2090690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346439|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1989|NULL|-1.4237100|-0.2090690	chr14	 54964098	 54964554	-	NA	NA	NA	NA	GMFB	NA	chr14:54954098-54955744	inter
CUST_5451_PI429285431	0.89309347	A	0.9023595	A	0.993597859026252	0	lncRNA	5385-1_{1..461}	"transcript_id ""ENST00000565300.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565300.1"" | genecode_v17"	chr16	 20593096	 20593556	+	ENSG00000260201.1	ENST00000565300.1	RP11-143N13.2	RP11-143N13.2-002	ACSM2B	NA	chr16:20583096-20587695	inter
CUST_17090_PI429285431	0.9011307	A	0.91192806	A	0.992543776943879	0	lncRNA	18798-1_{1..1019}	lnc-CCDC54-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC54-2:9	chr3	106970390	106971408	+	lnc-CCDC54-2	lnc-CCDC54-2:9	XLOC_002746	linc-CCDC54	NA	NA	NA	inter
CUST_42278_PI429285431	3.066216	P	3.5516155	P	0.714299244236001	0	lncRNA	44890-1_{1..137}	ENST00000363515 ncrna:snoRNA chromosome:GRCh37:14:38189630:38189766:1 gene:ENSG00000200385 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363515 ncrna:snoRNA chromosome:GRCh37:14:38189630:38189766:1 gene:ENSG00000200385 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 38189630	 38189766	+	ENSG00000200385	ENST00000363515	NA	NA	TTC6	NA	chr14:38179630-38199766	inter
CUST_36410_PI429285431	7.3447905	P	7.684006	P	0.790471032583462	0	lncRNA	37628-1_{1..455}	n344927|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_476|NULL|-1.4755700|-0.4079697	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344927|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_476|NULL|-1.4755700|-0.4079697	chr6	130917299	130917753	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17909_PI429285431	1.0943964	A	1.1800005	A	0.942389846189879	0	lncRNA	19640-1_{1..815}	lnc-DYRK1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DYRK1A-1:1	chr21	 38668375	 38669189	+	lnc-DYRK1A-1	lnc-DYRK1A-1:1	XLOC_013936	linc-DYRK1A-1	NA	NA	NA	inter
CUST_38553_PI429285431	2.94868	A	3.514443	A	0.675598017612364	0	lncRNA	39560-1_{1..1463}	n383361|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002mfy.2||1.6277400|-0.2371238	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383361|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002mfy.2||1.6277400|-0.2371238	chr19	  7004963	  7006425	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43151_PI429285431	0.89688	A	0.90813565	A	0.992228533157574	0	lncRNA	47966-1_{1..795}	ENST00000597236 havana:sense_intronic chromosome:GRCh37:1:146147393:146159103:-1 gene:ENSG00000227733 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000597236 havana:sense_intronic chromosome:GRCh37:1:146147393:146159103:-1 gene:ENSG00000227733 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr1	146147393	146148187	-	ENSG00000227733	ENST00000597236	NA	NA	NA	NA	NA	inter
CUST_45048_PI429285431	0.899723	A	0.97197586	A	0.951151554153352	0	lncRNA	49542-3_{6001..6384}	"gi|298566296|ref|NR_033766.1| Homo sapiens forkhead box P2 (FOXP2), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298566296|ref|NR_033766.1| Homo sapiens forkhead box P2 (FOXP2), transcript variant 7, non-coding RNA"	Chr7	113732365	113732748	+	93986	NR_033766.1	NA	NA	NA	NA	NA	inter
CUST_17182_PI429285431	1.1063917	A	0.8878771	A	1.16353499295273	0	lncRNA	18893-1_{1..348}	lnc-REG3G-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-REG3G-2:1	chr2	 78792998	 78793345	+	lnc-REG3G-2	lnc-REG3G-2:1	XLOC_001544	linc-REG3G-1	NA	NA	NA	inter
LNCA_21_P0009402	6.8220286	P	7.206146	P	0.766247623799371	0	lncRNA	AK098506	NA	AK098506	NA	NA	LOC284112	uncharacterized LOC284112	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012373), lincRNA [TCONS_00026027]"	chr17:6921533-6921474	hs|17p13.1	Agilent_HUMAN_G3V2	AK098506	AK098506	chr17	  6921474	  6921533	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11887_PI429285431	3.3321288	P	3.060316	P	1.20732392240829	0	lncRNA	13469-1_{1..618}	lnc-CPEB4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPEB4-2:2	chr5	173134850	173135467	+	lnc-CPEB4-2	lnc-CPEB4-2:2	XLOC_004643	linc-CPEB4-2	NA	NA	NA	inter
CUST_40981_PI429285431	0.8802912	A	2.783662	P	0.267318057328232	0	lncRNA	41650-1_{1..828}	n411105|NR_038929|lncRNA|Homosapiens||RefGeneNoncode|NR_038929||1.9072300|-0.1793397	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411105|NR_038929|lncRNA|Homosapiens||RefGeneNoncode|NR_038929||1.9072300|-0.1793397	chr6	 27729522	 27730349	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18453_PI429285431	1.1199862	A	1.0121408	A	1.07761766075045	0	lncRNA	20176-2_{3001..4564}	lnc-TNR-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TNR-2:3	chr1	175164776	175166339	-	lnc-TNR-2	lnc-TNR-2:3	ENSG00000235750	KIAA0040	KIAA0040	NA	chr1:175151776-175162229	inner
CUST_39538_PI429285431	0.8791615	A	0.88067937	A	0.99894844595989	0	lncRNA	40483-2_{3001..4427}	n387441|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011edo.1||1.0786800|-0.3612195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387441|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011edo.1||1.0786800|-0.3612195	chr6	138664321	138665747	+	NA	NA	NA	NA	KIAA1244	NA	chr6:138651321-138665800	inner
CUST_4352_PI429285431	1.1950563	A	1.4386287	A	0.844651196271193	0	lncRNA	4307-1_{1..914}	"transcript_id ""ENST00000602731.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602731.1"" | genecode_v17"	chr12	 85657322	 85658235	+	ENSG00000269916.1	ENST00000602731.1	RP11-193M21.1	RP11-193M21.1-001	NA	NA	NA	inter
CUST_9236_PI429285431	0.88996106	A	0.89639235	A	0.995552090847575	0	lncRNA	10746-1_{1..538}	lnc-RP11-432B6.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-432B6.3.1-1:1	chr3	159942930	159943467	-	lnc-RP11-432B6.3.1-1	lnc-RP11-432B6.3.1-1:1	ENSG00000244040	XLOC_003309	LOC401097	NA	chr3:159943423-159946000	inter
CUST_15498_PI429285431	1.5449972	A	2.7292705	A	0.440046137810265	0	lncRNA	17188-1_{1..785}	lnc-AUH-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AUH-2:4	chr9	 93868747	 93869531	-	lnc-AUH-2	lnc-AUH-2:4	XLOC_007775	linc-DIRAS2-4	NA	NA	NA	inter
CUST_32046_PI429285431	3.9344022	P	4.0892754	P	0.898211314161514	0	lncRNA	33760-1_{1..1206}	n338607|BC036688|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1013|NULL|0.4778340|-0.4014341	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338607|BC036688|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1013|NULL|0.4778340|-0.4014341	chr13	 26698246	 26699451	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12226_PI429285431	6.202465	P	6.8630323	P	0.632629483987747	0	lncRNA	13830-1_{1..495}	lnc-CHD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD2-1:1	chr15	 93584557	 93585051	+	lnc-CHD2-1	lnc-CHD2-1:1	XLOC_011358	linc-MCTP2-7	RGMA	NA	chr15:93586636-93594641	inter
CUST_39573_PI429285431	0.88311446	A	0.8827493	A	1.0002531416594	0	lncRNA	40517-1_{1..3000}	n387546|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011hjx.1||-0.4863090|-0.3469563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387546|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011hjx.1||-0.4863090|-0.3469563	chr6	  1161362	  1164361	+	NA	NA	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80"	NA	inter
CUST_19073_PI429285431	4.5946817	P	4.6412497	P	0.968236911946234	0	lncRNA	20764-1_{1..691}	lnc-C8A-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C8A-4:2	chr1	 58333056	 58333746	+	lnc-C8A-4	lnc-C8A-4:2	ENSG00000226759	RP4-737A23.2	DAB1	NA	chr1:58323056-58343170	inner
CUST_900_PI429285431	0.9060999	A	0.90981275	A	0.997429757235327	0	lncRNA	889-1_{1..1386}	"transcript_id ""ENST00000445738.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000445738.1"" | genecode_v17"	chr2	 64834109	 64835494	+	ENSG00000233694.1	ENST00000445738.1	AC007365.1	AC007365.1-001	NA	NA	NA	inter
CUST_36029_PI429285431	6.855976	P	6.906646	P	0.965487843924248	0	lncRNA	37356-5_{12001..15000}	n344637|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_185|NULL|-1.3340200|-0.3109463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344637|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_185|NULL|-1.3340200|-0.3109463	chr11	 65201792	 65204791	-	NA	NA	NA	NA	FRMD8	NA	chr11:65179792-65180996	inter
CUST_41124_PI429285431	13.635127	P	13.748139	P	0.924655587012756	0	lncRNA	41896-1_{1..76}	ENST00000385070 ncrna:miRNA chromosome:GRCh37:11:2155364:2155439:-1 gene:ENSG00000207805 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385070 ncrna:miRNA chromosome:GRCh37:11:2155364:2155439:-1 gene:ENSG00000207805 gene_biotype:miRNA transcript_biotype:miRNA	chr11	  2155364	  2155439	-	ENSG00000207805	ENST00000385070	NA	NA	IGF2	NA	chr11:2150347-2165439	inner
CUST_45398_PI429285431	5.2208076	P	4.7620096	P	1.37439624500509	0	lncRNA	49828-1_{1..3000}	"gi|389565512|ref|NR_051978.1| Homo sapiens TBC1 domain family, member 2 (TBC1D2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|389565512|ref|NR_051978.1| Homo sapiens TBC1 domain family, member 2 (TBC1D2), transcript variant 4, non-coding RNA"	Chr9	100961280	100964279	-	55357	NR_051978.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0005446	3.0977325	P	2.409006	A	1.61186006443294	0	lncRNA	TCONS_00013636	NA	NA	NA	NA	XLOC_006298	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006298), lincRNA [TCONS_00013636]"	chr7:153120542-153120601	hs|7q36.2	Agilent_HUMAN_G3V2	TCONS_00013636	TCONS_00013636	chr7	153120542	153120601	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16427_PI429285431	0.907661	A	2.8066535	A	0.268130548105363	0	lncRNA	18127-1_{1..432}	lnc-C4orf40-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C4orf40-1:1	chr4	 71012337	 71012768	+	lnc-C4orf40-1	lnc-C4orf40-1:1	XLOC_003567	linc-C4orf40	C4orf40	NA	chr4:71019904-71022421	inter
CUST_16932_PI429285431	2.0799727	A	2.8336654	A	0.593083565500152	0	lncRNA	18644-1_{1..280}	lnc-HOXD13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOXD13-1:1	chr2	176768832	176769111	+	lnc-HOXD13-1	lnc-HOXD13-1:1	XLOC_001762	linc-HOXD13-1	NA	NA	NA	inter
CUST_22001_PI429285431	0.9076867	A	0.9052609	A	1.00168285083747	0	lncRNA	23610-1_{1..720}	lnc-SLC7A1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC7A1-2:1	chr13	 29824552	 29825271	-	lnc-SLC7A1-2	lnc-SLC7A1-2:1	ENSG00000236758.1	MTUS2-AS2	MTUS2	NA	chr13:29814552-29834691	inner
CUST_32912_PI429285431	0.8842355	A	1.4166214	A	0.691410347528169	0	lncRNA	34537-1_{1..3000}	n339585|AL833490|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2029|NULL|-1.1669100|-0.4236392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339585|AL833490|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2029|NULL|-1.1669100|-0.4236392	chr20	 14591718	 14594717	+	NA	NA	NA	NA	MACROD2	NA	chr20:14581718-14605690	inner
CUST_29233_PI429285431	4.824059	P	5.013066	P	0.877209292476462	0	lncRNA	30984-1_{1..457}	n326764|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007169|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007169|-0.9192430|-0.2066822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326764|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007169|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007169|-0.9192430|-0.2066822	chr1	   150308	   150764	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11909_PI429285431	5.257259	P	5.274638	P	0.988026060210404	0	lncRNA	13490-1_{1..732}	lnc-C1orf201-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C1orf201-2:2	chr1	 24826143	 24826874	-	lnc-C1orf201-2	lnc-C1orf201-2:2	XLOC_000743	linc-C1orf201-1	RCAN3	NA	chr1:24829387-24836592	inter
LNCA_21_P0007884	0.89740574	A	0.89453274	A	1.00199339602721	0	lncRNA	TCONS_00021370	NA	NA	NA	NA	XLOC_010135	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010135), lincRNA [TCONS_00021370]"	chr12:77710770-77710711	hs|12q21.2	Agilent_HUMAN_G3V2	TCONS_00021370	TCONS_00021370	chr12	 77710711	 77710770	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17445_PI429285431	1.5108502	A	1.9994575	A	0.712712780306796	0	lncRNA	19169-1_{1..3000}	lnc-C5orf39-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf39-1:10	chr5	 43016464	 43019463	-	lnc-C5orf39-1	lnc-C5orf39-1:10	XLOC_004804	linc-SEPP1-1	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-95.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.41;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10"	NA	inter
LNCA_21_P0002522	3.794976	P	4.5508957	P	0.592168764956383	0	lncRNA	TCONS_00004501	NA	NA	NA	NA	XLOC_002399	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002399), lincRNA [TCONS_00004501]"	chr2:175197498-175197439	hs|2q31.1	Agilent_HUMAN_G3V2	TCONS_00004501	TCONS_00004501	chr2	175197439	175197498	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37186_PI429285431	0.88421464	A	0.8837494	A	1.00032253179648	0	lncRNA	38299-3_{6001..7364}	n345618|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1167|NULL|-1.3440200|-0.4104422	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345618|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1167|NULL|-1.3440200|-0.4104422	chr4	160031826	160033189	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20"	NA	inter
CUST_11447_PI429285431	3.369122	P	4.2076216	P	0.559224859465276	0	lncRNA	13014-2_{3001..5952}	lnc-TCF12-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF12-1:2	chr15	 57598100	 57601051	+	lnc-TCF12-1	lnc-TCF12-1:2	XLOC_011264	linc-CGNL1-2	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30"	NA	inter
CUST_9823_PI429285431	3.6530168	P	3.360332	P	1.22491768266307	0	lncRNA	11341-1_{1..378}	lnc-CTC-236F12.4.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTC-236F12.4.1-1:4	chr5	 55752234	 55752611	-	lnc-CTC-236F12.4.1-1	lnc-CTC-236F12.4.1-1:4	XLOC_004829	linc-ANKRD55-6	LOC100509780	NA	chr5:55761428-55761784	inter
CUST_35912_PI429285431	0.8932606	A	1.0811428	A	0.877893477089029	0	lncRNA	37283-1_{1..935}	n344558|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_106|NULL|-1.3468000|-0.3225323	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344558|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_106|NULL|-1.3468000|-0.3225323	chr2	 47552996	 47553930	+	NA	NA	NA	NA	NA	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_19091_PI429285431	4.6821003	P	4.0746765	A	1.52353622153854	0	lncRNA	20781-1_{1..2807}	lnc-WISP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WISP1-1:1	NA	NA	     2806	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36517_PI429285431	0.9103051	A	0.9185922	A	0.994272286258448	0	lncRNA	37716-2_{3001..4718}	n345017|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_566|NULL|-1.3343900|-0.3390775	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345017|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_566|NULL|-1.3343900|-0.3390775	chr8	102187674	102189391	+	NA	NA	NA	NA	ZNF706	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr8:102209266-102216979"	NA	inter
CUST_22926_PI429285431	0.9091121	A	0.9185541	A	0.993476674196725	0	lncRNA	24502-1_{1..525}	lnc-DTWD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DTWD2-1:1	chr5	118406501	118407025	-	lnc-DTWD2-1	lnc-DTWD2-1:1	ENSG00000249494.1	CTB-161M19.4	DMXL1	"hg19_refFlat_CATSPER2:range=chr15:43932483-439402595'pad=0,hg19_refFlat_CATSPER2:range=chr15:43932483-439402595'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_CATSPER2:range=chr15:43922899-439402595'pad=0,hg19_refFlat_CATSPER2:range=chr15:43922899-439402595'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00chr5:118407084-118416585"	NA	inter
CUST_45849_PI429285431	6.5265427	P	6.3215876	P	1.15265047309712	0	lncRNA	50180-1_{1..3000}	"gi|351542245|ref|NR_045286.1| Homo sapiens protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 (PPFIA1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|351542245|ref|NR_045286.1| Homo sapiens protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 (PPFIA1), transcript variant 3, non-coding RNA"	Chr11	 70116806	 70119805	+	8500	NR_045286.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0012634	0.90489423	A	0.92432207	A	0.986623913167255	0	lncRNA	TCONS_l2_00020891	NA	NA	NA	NA	XLOC_l2_010947	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010947), lincRNA [TCONS_l2_00020891]"	chr4:174850931-174850990	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_l2_00020891	TCONS_l2_00020891	chr4	174850931	174850990	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44425_PI429285431	1.965904	A	0.90049154	A	2.09276810702096	0	lncRNA	49038-1_{1..3000}	"gi|335353790|ref|NR_038380.1| Homo sapiens SLC7A11 antisense RNA 1 (SLC7A11-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|335353790|ref|NR_038380.1| Homo sapiens SLC7A11 antisense RNA 1 (SLC7A11-AS1), non-coding RNA"	Chr4	139010168	139013167	+	641364	NR_038380.1	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00"	NA	inter
CUST_20435_PI429285431	5.790782	P	5.4542584	P	1.26271022673633	0	lncRNA	22079-1_{1..819}	lnc-GLUD1-4:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLUD1-4:8	chr10	 89096543	 89097361	-	lnc-GLUD1-4	lnc-GLUD1-4:8	ENSG00000223482.1	RP11-322M19.1	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
CUST_35469_PI429285431	0.89260495	A	1.9693604	A	0.474093838993908	0	lncRNA	36874-1_{1..2596}	n342554|AK097733|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5053|NULL|0.7061110|-0.1561219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342554|AK097733|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5053|NULL|0.7061110|-0.1561219	chr20	 31564504	 31567099	-	NA	NA	NA	NA	SUN5	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70chr20:31571581-31592239"	NA	inner
CUST_31308_PI429285431	1.0738988	A	0.91812867	A	1.11401613631759	0	lncRNA	33091-2_{3001..5572}	n337771|AL832122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|153|NULL|0.2177250|-0.4086090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337771|AL832122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|153|NULL|0.2177250|-0.4086090	chr1	 23610801	 23613372	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10"	NA	inter
CUST_25250_PI429285431	2.7305489	A	2.8537788	A	0.918129842487089	0	lncRNA	26780-1_{1..574}	lnc-STOML1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STOML1-1:2	chr15	 74220406	 74220979	-	lnc-STOML1-1	lnc-STOML1-1:2	ENSG00000261801.1	RP11-941F15.1	LOXL1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr15:74218789-74230544"	NA	inner
CUST_50910_PI429285431	1.4039257	A	1.1707028	A	1.17545792558664	0	lncRNA	54551-1_{1..864}	hg19_lincRNAsTranscripts_TCONS_l2_00006114 range=chr12:9549651-9560071 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006114 range=chr12:9549651-9560071 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  9549651	  9550514	-	NA	NA	NA	NA	LOC728715	NA	chr12:9549658-9555094	inter
LNCA_33_P3230985	1.250601	A	2.9312367	A	0.311945153402128	0	lncRNA	XR_110535	XR_110535	XR_110535	   403312	Hs.450611	MGC39545	uncharacterized LOC403312	ENST00000527818	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC403312 (MGC39545), miscRNA [XR_110535]"	chr11:125366648-125366707	hs|11q24.2	Agilent_HUMAN_G3V2	XR_110535	XR_110535	chr11	125366648	125366707	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001991	4.4543805	P	4.166153	P	1.22113906010671	0	lncRNA	ENST00000457813	NA	NA	NA	NA	XLOC_001945	NA	ENST00000457813	NA	NA	"BROAD Institute lincRNA (XLOC_001945), lincRNA [TCONS_00003152]"	chr2:2733860-2733801	hs|2p25.3	Agilent_HUMAN_G3V2	ENST00000457813	ENST00000457813	chr2	  2733801	  2733860	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14834_PI429285431	1.4448591	A	1.4276965	A	1.011967249109	0	lncRNA	16495-1_{1..222}	lnc-DMRTB1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRTB1-1:2	chr1	 53905676	 53905897	+	lnc-DMRTB1-1	lnc-DMRTB1-1:2	XLOC_000198	linc-DMRTB1-1	NA	NA	NA	inter
CUST_3511_PI429285431	4.0510116	P	4.2550306	P	0.868128794446258	0	lncRNA	3482-1_{1..329}	"transcript_id ""ENST00000427833.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427833.1"" | genecode_v17"	chr9	109879740	109880068	-	ENSG00000226047.1	ENST00000427833.1	RP11-196I18.4	RP11-196I18.4-001	NA	"hg19_refFlat_APIP:range=chr11:34904264-349378315'pad=0,hg19_refFlat_APIP:range=chr11:34904264-349378315'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30"	NA	inter
LNCA_21_P0001259	3.7807932	P	3.7797792	P	1.0007030982989	0	lncRNA	TCONS_00000827	NA	NA	NA	NA	XLOC_000035	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000035), lincRNA [TCONS_00000827]"	chr1:4653644-4653703	hs|1p36.32	Agilent_HUMAN_G3V2	TCONS_00000827	TCONS_00000827	chr1	  4653644	  4653703	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17463_PI429285431	0.9185706	A	0.9307842	A	0.99156991175921	0	lncRNA	19187-2_{3001..3784}	lnc-SLC25A30-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A30-2:4	chr13	 45956450	 45957233	-	lnc-SLC25A30-2	lnc-SLC25A30-2:4	XLOC_010592	linc-TPT1-2	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80"	NA	inter
CUST_42365_PI429285431	8.96348	P	9.036239	P	0.950817920643561	0	lncRNA	45041-1_{1..66}	ENST00000384048 ncrna:snoRNA chromosome:GRCh37:19:3982505:3982570:-1 gene:ENSG00000206775 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384048 ncrna:snoRNA chromosome:GRCh37:19:3982505:3982570:-1 gene:ENSG00000206775 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	  3982505	  3982570	-	ENSG00000206775	ENST00000384048	NA	NA	EEF2	NA	chr19:3976054-3985461	inner
CUST_32076_PI429285431	0.8912044	A	0.89304453	A	0.9987253321587	0	lncRNA	33784-1_{1..3000}	n338639|BC044918|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1053|NULL|0.3075180|-0.2901643	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338639|BC044918|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1053|NULL|0.3075180|-0.2901643	chr2	  6506141	  6509140	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_35174_PI429285431	7.6333284	P	7.92222	P	0.81853068134648	0	lncRNA	36576-1_{1..2609}	n342153|BC041998|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4640|NULL|-0.2531020|-0.3174967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342153|BC041998|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4640|NULL|-0.2531020|-0.3174967	chr6	149539061	149541669	+	NA	NA	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80"	NA	inter
CUST_40939_PI429285431	5.6516943	P	5.5162187	P	1.09845487161636	0	lncRNA	41620-1_{1..1978}	n410899|NR_038361|lncRNA|Homosapiens||RefGeneNoncode|NR_038361||-1.1298400|-0.1874921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410899|NR_038361|lncRNA|Homosapiens||RefGeneNoncode|NR_038361||-1.1298400|-0.1874921	chr7	 77313167	 77315144	-	NA	NA	NA	NA	RSBN1L	"hg19_refFlat_RSBN1L:range=chr7:77325787-774084855'pad=0,hg19_refFlat_RSBN1L:range=chr7:77325787-774084855'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.90chr7:77325743-77336662"	NA	inner
CUST_35191_PI429285431	0.89343005	A	0.9294062	A	0.975371585808505	0	lncRNA	36592-1_{1..1570}	n342175|BC040873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4662|NULL|-1.1691900|-0.3018818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342175|BC040873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4662|NULL|-1.1691900|-0.3018818	chr6	166650456	166652025	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44860_PI429285431	3.1455746	P	5.725627	P	0.167234870114909	0	lncRNA	49386-1_{1..2427}	"gi|310119898|ref|XR_108727.1| PREDICTED: Homo sapiens uncharacterized LOC100128653 (LOC100128653), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119898|ref|XR_108727.1| PREDICTED: Homo sapiens uncharacterized LOC100128653 (LOC100128653), misc_RNA"	Chr7	  1572090	  1574516	-	100128653	XR_108727.1	NA	NA	NA	NA	NA	inter
LNCA_33_P3416622	8.956798	P	8.8173065	P	1.10151680095164	0	lncRNA	XR_109689	XR_109689	XR_109689	100126693	Hs.473952	LINC00322	long intergenic non-protein coding RNA 322	NA	THC2482602	NA	"PREDICTED: Homo sapiens non-protein coding RNA 322 (NCRNA00322), miscRNA [XR_109689]"	chr21:44748637-44748578	hs|21q22.3	Agilent_HUMAN_G3V2	XR_109689	XR_109689	chr21	 44748578	 44748637	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7245_PI429285431	0.88844585	A	0.89205873	A	0.99749887545147	0	lncRNA	7906-1_{1..283}	"transcript_id ""ENST00000516895.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516895.1"" | genecode_v17"	chr7	121376497	121376779	+	ENSG00000252704.1	ENST00000516895.1	RN7SKP277	RN7SKP277-201	NA	NA	NA	inter
CUST_36815_PI429285431	2.0053103	A	2.836815	A	0.561942842258327	0	lncRNA	37986-1_{1..1442}	n345294|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_843|NULL|-1.4055600|-0.1567676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345294|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_843|NULL|-1.4055600|-0.1567676	chr15	 69958545	 69959986	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25422_PI429285431	0.91651565	A	0.9118719	A	1.00322398812623	0	lncRNA	26952-1_{1..537}	lnc-PBX1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PBX1-2:2	chr1	165187830	165188366	+	lnc-PBX1-2	lnc-PBX1-2:2	ENSG00000238022.1	RP11-38C18.3	LMX1A	NA	chr1:165177830-165198284	inner
CUST_22768_PI429285431	1.278894	A	0.8895613	A	1.30978743842723	0	lncRNA	24350-1_{1..278}	lnc-GIT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GIT1-1:1	chr17	 27919213	 27919490	-	lnc-GIT1-1	lnc-GIT1-1:1	ENSG00000264647.1	RP11-68I3.7	ANKRD13B	NA	chr17:27920527-27929259	inter
LNCA_21_P0014494	6.8462667	P	6.9297123	P	0.943800865766746	0	lncRNA	XR_110082	XR_110082	XR_110082	NA	NA	LOC100507619	uncharacterized LOC100507619	ENST00000505151	THC2475964	NA	"PREDICTED: Homo sapiens hypothetical LOC100507619 (LOC100507619), miscRNA [XR_110082]"	chr5:180684437-180684496	hs|5q35.3	Agilent_HUMAN_G3V2	XR_110082	XR_110082	chr5	180684437	180684496	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18766_PI429285431	4.6156225	P	5.848009	P	0.425612816336655	0	lncRNA	20462-1_{1..3000}	lnc-TUBGCP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUBGCP2-1:2	chr10	135090276	135093275	-	lnc-TUBGCP2-1	lnc-TUBGCP2-1:2	ENSG00000151651	ADAM8	ADAM8	NA	chr10:135080276-135090407	inner
CUST_22857_PI429285431	1.4447043	A	0.91363573	A	1.44499907580012	0	lncRNA	24435-1_{1..543}	lnc-AP002478.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP002478.1-5:1	chr18	  4293160	  4293702	+	lnc-AP002478.1-5	lnc-AP002478.1-5:1	ENSG00000261520.1	RP11-138C24.1	DLGAP1	NA	chr18:4283160-4303365	inner
CUST_18495_PI429285431	1.4421926	A	1.2325228	A	1.15642347464773	0	lncRNA	20212-1_{1..665}	lnc-RP11-116D17.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-116D17.1.1-2:1	chr12	116019417	116020081	+	lnc-RP11-116D17.1.1-2	lnc-RP11-116D17.1.1-2:1	ENSG00000258108	RP11-1028N23.3	NA	NA	NA	inter
CUST_33414_PI429285431	4.9042478	P	4.782169	P	1.08830188309394	0	lncRNA	34994-1_{1..780}	n340142|CR618926|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2602|NULL|1.9889200|-0.1312761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340142|CR618926|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2602|NULL|1.9889200|-0.1312761	chr10	114206778	114207557	+	NA	NA	NA	NA	VTI1A	NA	chr10:114206756-114308089	inner
LNCA_21_P0012450	0.8908245	A	0.892523	A	0.998823382271919	0	lncRNA	ENST00000491849	NA	NA	NA	NA	XLOC_l2_010258	NA	ENST00000491849	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010258), lincRNA [TCONS_l2_00019370]"	chr3:84917767-84917366	hs|3p12.1	Agilent_HUMAN_G3V2	ENST00000491849	ENST00000491849	chr3	 84917366	 84917767	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43189_PI429285431	0.89708644	A	0.89580417	A	1.00088919693661	0	lncRNA	48003-1_{1..607}	ENST00000601752 havana:sense_intronic chromosome:GRCh37:19:38454493:38455430:1 gene:ENSG00000268051 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000601752 havana:sense_intronic chromosome:GRCh37:19:38454493:38455430:1 gene:ENSG00000268051 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 38454493	 38455099	+	ENSG00000268051	ENST00000601752	NA	NA	SIPA1L3	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10chr19:38444493-38465430"	NA	inner
CUST_38640_PI429285431	1.5378437	A	1.4468911	A	1.06507320965042	0	lncRNA	39643-1_{1..621}	n383858|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002woe.1||-1.2230400|-0.2270462	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383858|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002woe.1||-1.2230400|-0.2270462	chr20	 13200349	 13200969	+	NA	NA	NA	NA	ISM1	NA	chr20:13202418-13210970	inter
CUST_20457_PI429285431	0.9129714	A	0.8999689	A	1.00905338239943	0	lncRNA	22101-1_{1..578}	lnc-MEGF11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MEGF11-1:1	chr15	 66585664	 66586241	-	lnc-MEGF11-1	lnc-MEGF11-1:1	ENSG00000261318.1	RP11-653J6.1	DIS3L	NA	chr15:66585633-66595695	inner
CUST_29926_PI429285431	7.2144833	P	7.044343	P	1.12516790031464	0	lncRNA	31690-1_{1..284}	n334075|M34340|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195578|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195578|1.5113800|-0.0622543	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334075|M34340|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195578|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195578|1.5113800|-0.0622543	chr17	 38249264	 38249547	+	NA	NA	NA	NA	NR1D1	"hg19_refFlat_NR1D1:range=chr17:38249336-382563475'pad=0,hg19_refFlat_NR1D1:range=chr17:38249336-382563475'pad=0 3'pad=0 strand=- repeatMasking=none,-97.20chr17:38249037-38256973"	NA	inner
CUST_3208_PI429285431	2.46545	A	2.5070777	A	0.971558182231239	0	lncRNA	3186-1_{1..466}	"transcript_id ""ENST00000534675.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534675.1"" | genecode_v17"	chr8	 82797612	 82798077	+	ENSG00000254689.1	ENST00000534675.1	RP11-354A14.1	RP11-354A14.1-001	NA	NA	NA	inter
LNCA_21_P0004526	9.44533	P	8.882761	P	1.47689678002227	0	lncRNA	TCONS_00010780	NA	NA	NA	NA	XLOC_004528	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004528), lincRNA [TCONS_00010780]"	chr5:120115828-120115887	hs|5q23.1	Agilent_HUMAN_G3V2	TCONS_00010780	TCONS_00010780	chr5	120115828	120115887	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16122_PI429285431	0.88218564	A	0.8832772	A	0.999243674422073	0	lncRNA	17828-1_{1..380}	lnc-ILK-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ILK-4:1	chr11	  6678138	  6678517	+	lnc-ILK-4	lnc-ILK-4:1	XLOC_009046	linc-OR2AG1-2	DCHS1	NA	chr11:6668138-6677080	inter
CUST_22098_PI429285431	5.3603344	P	5.7325215	P	0.772610344985607	0	lncRNA	23703-1_{1..418}	lnc-TCEAL4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCEAL4-1:1	chrX	102753912	102754329	+	lnc-TCEAL4-1	lnc-TCEAL4-1:1	ENSG00000228885.1	LL0XNC01-250H12.2	RAB40A	NA	chrX:102754681-102764210	inter
CUST_35666_PI429285431	1.1026204	A	1.3089181	A	0.866758689477535	0	lncRNA	37087-1_{1..1276}	n342825|BC040701|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5328|NULL|-1.0367100|-0.2566447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342825|BC040701|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5328|NULL|-1.0367100|-0.2566447	chr7	143948754	143950029	-	NA	NA	NA	NA	OR2A7	NA	chr7:143955789-143956721	inter
CUST_14224_PI429285431	1.0984467	A	1.184918	A	0.941823548476105	0	lncRNA	15881-1_{1..382}	lnc-F11-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-F11-3:1	chr4	187980530	187980911	+	lnc-F11-3	lnc-F11-3:1	XLOC_003823	linc-ZFP42-9	NA	NA	NA	inter
CUST_36629_PI429285431	0.889619	A	0.8965031	A	0.995239671942276	0	lncRNA	37822-1_{1..1181}	n345125|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_674|NULL|-1.2794700|-0.4253463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345125|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_674|NULL|-1.2794700|-0.4253463	chr10	 92927622	 92928802	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30"	NA	inter
CUST_10908_PI429285431	0.9017701	A	1.2293671	A	0.796862659470522	0	lncRNA	12452-1_{1..417}	lnc-FAM49A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM49A-1:1	chr2	 16659537	 16659953	-	lnc-FAM49A-1	lnc-FAM49A-1:1	XLOC_002002	linc-NBAS-9	NA	NA	NA	inter
CUST_44594_PI429285431	5.1087646	P	3.1243153	P	3.9571158423003	0	lncRNA	49171-3_{6001..6957}	"gi|374253824|ref|NR_046207.1| Homo sapiens solute carrier family 12 (sodium/potassium/chloride transporters), member 2 (SLC12A2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|374253824|ref|NR_046207.1| Homo sapiens solute carrier family 12 (sodium/potassium/chloride transporters), member 2 (SLC12A2), transcript variant 3, non-coding RNA"	Chr5	127425483	127426439	+	6558	NR_046207.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00"	NA	inter
CUST_36359_PI429285431	0.894508	A	0.88937306	A	1.00356561090364	0	lncRNA	37582-1_{1..3000}	n344879|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_428|NULL|-1.2914100|-0.2769935	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344879|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_428|NULL|-1.2914100|-0.2769935	chr6	143860212	143863211	-	NA	NA	NA	NA	PHACTR2	NA	chr6:143929317-143931694	inter
CUST_13733_PI429285431	4.8390675	P	4.7169476	P	1.08833288745956	0	lncRNA	15376-1_{1..209}	lnc-CCNI-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCNI-1:1	chr4	 78077832	 78078040	-	lnc-CCNI-1	lnc-CCNI-1:1	XLOC_003993	linc-CCNI-2	CCNG2	NA	chr4:78078357-78087856	inter
CUST_50098_PI429285431	1.3043562	A	1.63955	A	0.79267764754482	0	lncRNA	53830-1_{1..1437}	hg19_lincRNAsTranscripts_TCONS_l2_00029171 range=chr9:2423418-2493418 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029171 range=chr9:2423418-2493418 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	  2423418	  2424854	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4116_PI429285431	0.88925374	A	0.96547943	A	0.948535918001277	0	lncRNA	4077-1_{1..3000}	"transcript_id ""ENST00000525716.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525716.2"" | genecode_v17"	chr11	130736149	130739148	-	ENSG00000255455.2	ENST00000525716.2	RP11-890B15.3	RP11-890B15.3-002	SNX19	NA	chr11:130745766-130750142	inter
CUST_2783_PI429285431	7.1370945	P	7.621569	P	0.714757372006346	0	lncRNA	2767-1_{1..209}	"transcript_id ""ENST00000412197.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412197.1"" | genecode_v17"	chr7	 25587382	 25587590	-	ENSG00000227386.1	ENST00000412197.1	AC091705.1	AC091705.1-001	NA	NA	NA	inter
CUST_38641_PI429285431	7.0001326	P	7.1799498	P	0.882814848294166	0	lncRNA	39644-1_{1..237}	n383862|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wqf.1||-1.3201300|-0.3251960	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n383862|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wqf.1||-1.3201300|-0.3251960	chr20	 17943352	 17943588	-	NA	NA	NA	NA	C20orf72	NA	chr20:17949762-17953589	inner
CUST_35565_PI429285431	3.8106003	P	0.9227577	A	7.40162785253906	0	lncRNA	36979-1_{1..785}	n342695|AJ224166|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5197|NULL|-1.1028900|-0.2962080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342695|AJ224166|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5197|NULL|-1.1028900|-0.2962080	chr5	138609819	138610603	+	NA	NA	NA	NA	MATR3	"hg19_refFlat_MATR3:range=chr5:138643105-1386650845'pad=0,hg19_refFlat_MATR3:range=chr5:138643105-1386650845'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10chr5:138609441-138653213"	NA	inner
LNCA_21_P0006237	4.503597	P	4.863007	P	0.779483289506978	0	lncRNA	TCONS_00016207	NA	NA	NA	NA	XLOC_007597	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007597), lincRNA [TCONS_00016207]"	chr9:137160596-137160655	hs|9q34.2	Agilent_HUMAN_G3V2	TCONS_00016207	TCONS_00016207	chr9	137160596	137160655	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_249_PI429285431	0.99747837	A	2.71296	A	0.304500894225034	0	lncRNA	241-1_{1..317}	"transcript_id ""ENST00000451090.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451090.1"" | genecode_v17"	chr1	 59521671	 59521987	-	ENSG00000235215.2	ENST00000451090.1	RP11-145M4.2	RP11-145M4.2-001	NA	NA	NA	inter
CUST_49612_PI429285431	0.89186496	A	1.2744892	A	0.767041085029645	0	lncRNA	53401-2_{3001..5377}	hg19_lincRNAsTranscripts_TCONS_l2_00025671 range=chr7:12565462-12585630 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025671 range=chr7:12565462-12585630 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 12568462	 12570838	+	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_35893_PI429285431	8.001198	P	8.893772	P	0.538652218219576	0	lncRNA	37277-1_{1..3000}	n344552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_100|NULL|-1.2931500|-0.3004446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n344552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_100|NULL|-1.2931500|-0.3004446	chr15	 25241369	 25244368	+	NA	NA	NA	NA	SNRPN	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr15:25231369-25375009"	NA	inter
CUST_20115_PI429285431	2.117381	A	1.638636	A	1.39353090680335	0	lncRNA	21763-1_{1..1221}	lnc-SETD4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-SETD4-2:1	chr21	 37498785	 37500005	-	lnc-SETD4-2	lnc-SETD4-2:1	ENSG00000230212.2	AP000688.14	CBR3	"hg19_refFlat_CBR3:range=chr21:37507491-375188105'pad=0,hg19_refFlat_CBR3:range=chr21:37507491-375188105'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.70;hg19_refFlat_CBR1:range=chr21:37442414-374451805'pad=0,hg19_refFlat_CBR1:range=chr21:37442414-374451805'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.90chr21:37504692-37508938"	NA	inter
CUST_26263_PI429285431	10.029959	P	9.768094	P	1.19902770968014	0	lncRNA	27770-1_{1..508}	lnc-DRD5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DRD5-1:1	chr4	  9925400	  9925907	+	lnc-DRD5-1	lnc-DRD5-1:1	ENSG00000249219.1	RP13-560N11.1	SLC2A9	NA	chr4:9915400-9935770	inner
CUST_23307_PI429285431	0.90606934	A	1.734005	A	0.563334736778169	0	lncRNA	24878-1_{1..360}	lnc-PMFBP1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PMFBP1-4:3	chr16	 72698791	 72699150	-	lnc-PMFBP1-4	lnc-PMFBP1-4:3	ENSG00000261008.2	AC004158.2	NA	"hg19_refFlat_BANP:range=chr16:88008722-881102675'pad=0,hg19_refFlat_BANP:range=chr16:88008722-881102675'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.00"	NA	inter
CUST_16782_PI429285431	7.6354322	P	7.691626	P	0.961798245778067	0	lncRNA	18491-1_{1..269}	lnc-SULF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SULF2-1:1	chr20	 46471661	 46471929	-	lnc-SULF2-1	lnc-SULF2-1:1	XLOC_013770	linc-SULF2-6	NA	NA	NA	inter
LNCA_21_P0005643	0.8969739	A	0.894184	A	1.00193568233802	0	lncRNA	TCONS_00014575	NA	NA	NA	NA	XLOC_006685	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006685), lincRNA [TCONS_00014575]"	chr8:1305823-1305882	hs|8p23.3	Agilent_HUMAN_G3V2	TCONS_00014575	TCONS_00014575	chr8	  1305823	  1305882	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50265_PI429285431	1.2952249	A	1.2694422	A	1.01803185136048	0	lncRNA	53988-1_{1..1090}	hg19_lincRNAsTranscripts_TCONS_l2_00028810 range=chr9:69080676-69087735 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028810 range=chr9:69080676-69087735 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69080676	 69081765	+	NA	NA	NA	NA	LOC100507370	NA	chr9:69070676-69089939	inter
CUST_48378_PI429285431	17.020346	P	17.05927	P	0.973380649707673	0	lncRNA	52231-1_{1..763}	hg19_lincRNAsTranscripts_TCONS_l2_00001418 range=chr1:102251817-102252854 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001418 range=chr1:102251817-102252854 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	102251817	102252579	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29812_PI429285431	12.400406	P	12.624754	P	0.855981783808598	0	lncRNA	31575-1_{1..570}	n333528|BC040454|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000096175|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000096175|-1.0669800|-0.0931399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333528|BC040454|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000096175|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000096175|-1.0669800|-0.0931399	chr5	132298732	132299301	-	NA	NA	NA	NA	AFF4	NA	chr5:132288732-132299354	inner
CUST_26746_PI429285431	3.5348034	P	2.599567	A	1.91220394324314	0	lncRNA	28239-1_{1..921}	n323789|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060942|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060942|-0.8184210|-0.1841416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323789|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060942|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060942|-0.8184210|-0.1841416	chrX	152088523	152089443	-	NA	NA	NA	NA	ZNF185	"hg19_refFlat_ZNF185:range=chrX:152083034-1521390855'pad=0,hg19_refFlat_ZNF185:range=chrX:152083034-1521390855'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.20chrX:152082986-152102921"	NA	inner
LNCA_21_P0005402	0.9015909	A	0.9223827	A	0.985691575023486	0	lncRNA	THC2727479	NA	NA	NA	NA	XLOC_006178	NA	NA	THC2727479	NA	"BROAD Institute lincRNA (XLOC_006178), lincRNA [TCONS_00013538]"	chr7:095240321-095240380	hs|7q21.3	Agilent_HUMAN_G3V2	THC2727479	THC2727479	chr7	 95240321	 95240380	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51927_PI429285431	4.662961	P	4.3347034	P	1.25549614602502	0	lncRNA	55467-1_{1..793}	hg19_lincRNAsTranscripts_TCONS_l2_00016425 range=chr20:1451691-1454170 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016425 range=chr20:1451691-1454170 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	  1451691	  1452483	-	NA	NA	NA	NA	NSFL1C	NA	chr20:1441691-1448337	inter
CUST_8814_PI429285431	6.8227344	P	4.8118153	P	4.03038902879431	0	lncRNA	10353-3_{6001..6477}	lnc-OSBP2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OSBP2-2:3	chr22	 31377156	 31377632	+	lnc-OSBP2-2	lnc-OSBP2-2:3	ENSG00000253352	TUG1	MORC2	NA	chr22:31361156-31364187	inter
LNCA_21_P0003729	2.8820505	A	2.706437	A	1.12944459426433	0	lncRNA	TCONS_00008448	NA	NA	NA	NA	XLOC_003907	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003907), lincRNA [TCONS_00008448]"	chr4:23730472-23730413	hs|4p15.2	Agilent_HUMAN_G3V2	TCONS_00008448	TCONS_00008448	chr4	 23730413	 23730472	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48168_PI429285431	1.6719602	A	1.7853072	A	0.924440902930607	0	lncRNA	52034-1_{1..1373}	"gi|397137821|ref|XR_159295.1| PREDICTED: Homo sapiens uncharacterized LOC100996374 (LOC100996374), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397137821|ref|XR_159295.1| PREDICTED: Homo sapiens uncharacterized LOC100996374 (LOC100996374), misc_RNA"	NA	NA	NA	NA	NA	XR_159295.1	NA	NA	NA	NA	NA	Unknown
CUST_19104_PI429285431	3.0486948	A	1.092864	A	3.87939263756625	0	lncRNA	20792-2_{3001..6000}	lnc-AC012652.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-AC012652.1.1-2:1	NA	     3000	     5999	NA	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.14;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70"	NA	Unknown
CUST_35220_PI429285431	3.977584	P	4.0799646	P	0.931494657589386	0	lncRNA	36620-1_{1..3000}	n342208|BC047459|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4698|NULL|1.7473900|-0.2308340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342208|BC047459|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4698|NULL|1.7473900|-0.2308340	chr15	 21145766	 21148765	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50109_PI429285431	0.9102989	A	0.9251218	A	0.989778150526552	0	lncRNA	53839-1_{1..892}	hg19_lincRNAsTranscripts_TCONS_l2_00028797 range=chr9:69065483-69107282 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028797 range=chr9:69065483-69107282 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69065483	 69066374	+	NA	NA	NA	NA	LOC100507370	NA	chr9:69065490-69089939	inter
CUST_12909_PI429285431	5.4776835	P	6.201718	P	0.605402064472847	0	lncRNA	14538-1_{1..219}	lnc-RALGPS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RALGPS1-1:1	chr9	129998073	129998291	+	lnc-RALGPS1-1	lnc-RALGPS1-1:1	XLOC_007569	linc-GARNL3	NA	NA	NA	inter
CUST_39229_PI429285431	0.8943628	A	0.89941335	A	0.996505346073923	0	lncRNA	40202-1_{1..940}	n386052|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010adn.1||0.1148890|-0.2507695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386052|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010adn.1||0.1148890|-0.2507695	chr13	 50656413	 50657352	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45532_PI429285431	1.582527	A	1.0237107	A	1.473060107456	0	lncRNA	49940-1_{1..3000}	"gi|223468639|ref|NR_026794.1| Homo sapiens uncharacterized LOC731789 (LOC731789), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223468639|ref|NR_026794.1| Homo sapiens uncharacterized LOC731789 (LOC731789), non-coding RNA"	Chr10	 26932037	 26935036	+	731789	NR_026794.1	NA	NA	NA	NA	NA	inter
LNCA_33_P3267195	8.187596	P	8.271151	P	0.943729299775958	0	lncRNA	XR_108704	XR_108704	XR_108704	   497048	Hs.591355	KU-MEL-3	KU-MEL-3	ENST00000380106	THC2481673	NA	"PREDICTED: Homo sapiens KU-MEL-3 (KU-MEL-3), miscRNA [XR_108704]"	chr6:4611267-4611326	hs|6p25.1	Agilent_HUMAN_G3V2	XR_108704	XR_108704	chr6	  4611267	  4611326	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44309_PI429285431	4.870033	P	3.7452872	P	2.18063120859218	0	lncRNA	48941-1_{1..2897}	"gi|302393531|ref|NR_036497.1| Homo sapiens LPP antisense RNA 2 (LPP-AS2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302393531|ref|NR_036497.1| Homo sapiens LPP antisense RNA 2 (LPP-AS2), non-coding RNA"	Chr3	187868994	187871890	-	339929	NR_036497.1	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50"	NA	inter
LNCA_21_P0006399	4.94022	P	5.3602643	P	0.747401673935327	0	lncRNA	TCONS_00016507	NA	NA	NA	NA	XLOC_007895	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007895), lincRNA [TCONS_00016507]"	chr9:139144490-139144431	hs|9q34.3	Agilent_HUMAN_G3V2	TCONS_00016507	TCONS_00016507	chr9	139144431	139144490	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48716_PI429285431	5.6037035	P	5.812733	P	0.865119000587643	0	lncRNA	52558-1_{1..917}	hg19_lincRNAsTranscripts_TCONS_l2_00013967 range=chr2:128145000-128146971 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013967 range=chr2:128145000-128146971 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	128145000	128145916	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48971_PI429285431	0.8952126	A	1.2053424	A	0.806569188521132	0	lncRNA	52810-1_{1..869}	hg19_lincRNAsTranscripts_TCONS_l2_00019682 range=chr3:193766711-193787523 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019682 range=chr3:193766711-193787523 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	193766711	193767579	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24570_PI429285431	1.8497655	A	2.0140038	A	0.892399555441057	0	lncRNA	26118-1_{1..337}	lnc-SLC25A28-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A28-2:2	chr10	101287053	101287389	-	lnc-SLC25A28-2	lnc-SLC25A28-2:2	ENSG00000257582.1	RP11-129J12.2	NKX2-3	NA	chr10:101292690-101296281	inter
CUST_26752_PI429285431	6.1872425	P	6.5574317	P	0.773681026921377	0	lncRNA	28250-1_{1..586}	n323802|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058523|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058523|-0.8567080|-0.3453887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323802|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058523|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058523|-0.8567080|-0.3453887	chrX	136470493	136471078	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18933_PI429285431	4.136763	A	3.9392347	A	1.14673203025942	0	lncRNA	20625-1_{1..708}	lnc-HDDC2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HDDC2-5:1	chr6	126069973	126070680	-	lnc-HDDC2-5	lnc-HDDC2-5:1	ENSG00000237742	RP11-624M8.1	HEY2	NA	chr6:126070732-126080332	inter
LNCA_21_P0013152	0.8924972	A	0.89504546	A	0.998235239789439	0	lncRNA	ENST00000430296	NA	BC035400	NA	Hs.571062	XLOC_l2_013116	NA	ENST00000430296	THC2607517	NA	"BROAD Institute lincRNA (XLOC_l2_013116), lincRNA [TCONS_l2_00025470]"	chr6:129847833-129847774	hs|6q22.33	Agilent_HUMAN_G3V2	ENST00000430296	ENST00000430296	chr6	129847774	129847833	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6615_PI429285431	2.717515	A	3.5620656	P	0.556884251734618	0	lncRNA	6562-1_{1..462}	"transcript_id ""ENST00000599190.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599190.1"" | genecode_v17"	chr19	 58136400	 58136861	+	ENSG00000268392.1	ENST00000599190.1	AC003682.16	AC003682.16-001	ZNF134	"hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50chr19:58126400-58133636"	NA	inter
LNCA_21_P0013513	2.363157	A	3.4363382	P	0.475269853795079	0	lncRNA	TCONS_l2_00028187	NA	NA	NA	NA	XLOC_l2_014505	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014505), lincRNA [TCONS_l2_00028187]"	chr8:47503094-47503035	hs|8q11.1	Agilent_HUMAN_G3V2	TCONS_l2_00028187	TCONS_l2_00028187	chr8	 47503035	 47503094	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3011_PI429285431	2.2818491	A	2.140414	A	1.10300176538142	0	lncRNA	2990-1_{1..504}	"transcript_id ""ENST00000602626.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602626.1"" | genecode_v17"	chr8	 11409997	 11410500	-	ENSG00000269954.1	ENST00000602626.1	RP11-148O21.6	RP11-148O21.6-001	BLK	NA	chr8:11399997-11420500	inner
CUST_13131_PI429285431	0.8837013	A	0.8854475	A	0.998790358599996	0	lncRNA	14759-1_{1..642}	lnc-TPO-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPO-1:3	chr2	  1557942	  1558583	+	lnc-TPO-1	lnc-TPO-1:3	XLOC_001313	linc-TTC15-9	NA	NA	NA	inter
CUST_38399_PI429285431	8.191004	P	8.084519	P	1.07660199211794	0	lncRNA	39435-1_{1..3000}	n382338|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yxm.1||-0.8811550|-0.1830032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382338|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yxm.1||-0.8811550|-0.1830032	chr15	 25304603	 25307602	+	NA	NA	NA	NA	SNRPN	NA	chr15:25294603-25370803	inter
CUST_30156_PI429285431	0.8972904	A	1.1000588	A	0.868881658036373	0	lncRNA	31930-1_{1..677}	n334830|AJ296345|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246695_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246695_03|1.7388600|-0.1693857	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334830|AJ296345|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246695_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246695_03|1.7388600|-0.1693857	chr17	 39202747	 39203423	-	NA	NA	NA	NA	KRTAP2-2	NA	chr17:39210750-39211463	inner
CUST_22249_PI429285431	11.269498	P	11.451082	P	0.881734368678397	0	lncRNA	23850-1_{1..330}	lnc-TMCO3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMCO3-1:1	chr13	114130175	114130504	+	lnc-TMCO3-1	lnc-TMCO3-1:1	ENSG00000233613.1	DCUN1D2-AS2	DCUN1D2	NA	chr13:114120175-114140450	inner
CUST_5009_PI429285431	4.8890953	P	5.016587	P	0.91542163881306	0	lncRNA	4950-1_{1..721}	"transcript_id ""ENST00000524131.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524131.1"" | genecode_v17"	chr14	101301863	101302583	+	ENSG00000214548.9	ENST00000524131.1	MEG3	MEG3-021	NA	NA	NA	inter
CUST_44113_PI429285431	1.5014473	A	0.8906261	A	1.5271282220297	0	lncRNA	48779-1_{1..913}	"gi|201023357|ref|NR_024134.1| Homo sapiens ghrelin/obestatin prepropeptide (GHRL), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|201023357|ref|NR_024134.1| Homo sapiens ghrelin/obestatin prepropeptide (GHRL), transcript variant 9, non-coding RNA"	Chr3	 10327434	 10328346	-	51738	NR_024134.1	NA	NA	NA	NA	NA	inter
CUST_44283_PI429285431	0.9026353	A	1.3682199	A	0.724177571039387	0	lncRNA	48918-2_{3001..3855}	"gi|283945508|ref|NR_021485.2| Homo sapiens EGF-like and EMI domain containing 1, pseudogene (EGFEM1P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|283945508|ref|NR_021485.2| Homo sapiens EGF-like and EMI domain containing 1, pseudogene (EGFEM1P), non-coding RNA"	Chr3	167970310	167971164	+	93556	NR_021485.2	NA	NA	NA	"hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20"	NA	inter
CUST_44433_PI429285431	2.7208707	A	2.4887147	A	1.17458897378061	0	lncRNA	49045-1_{1..875}	"gi|397139076|ref|XR_109840.2| PREDICTED: Homo sapiens uncharacterized LOC100505491 (LOC100505491), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139076|ref|XR_109840.2| PREDICTED: Homo sapiens uncharacterized LOC100505491 (LOC100505491), misc_RNA"	NA	NA	NA	NA	NA	XR_109840.2	NA	NA	NA	NA	NA	Unknown
CUST_6014_PI429285431	8.226178	P	8.254329	P	0.980676355906081	0	lncRNA	5939-1_{1..559}	"transcript_id ""ENST00000572301.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000572301.1"" | genecode_v17"	chr17	 79353467	 79354025	-	ENSG00000262223.2	ENST00000572301.1	RP11-1055B8.3	RP11-1055B8.3-003	LOC100130370	NA	chr17:79352934-79357447	inter
CUST_26795_PI429285431	1.0579584	A	0.9015552	A	1.11450508577242	0	lncRNA	28303-1_{1..623}	n323859|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058988|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058988|-0.2853500|-0.1898483	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323859|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058988|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058988|-0.2853500|-0.1898483	chrX	 70799572	 70800194	-	NA	NA	NA	NA	OGT	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ACRC:range=chrX:70800672-708328325'pad=0,hg19_refFlat_ACRC:range=chrX:70800672-708328325'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90chrX:70789572-70795747"	NA	inter
CUST_50420_PI429285431	7.52496	P	6.7633486	P	1.6953832044338	0	lncRNA	54124-1_{1..2422}	hg19_lincRNAsTranscripts_TCONS_l2_00030163 range=chrX:23093748-23096498 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030163 range=chrX:23093748-23096498 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 23093748	 23096169	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002516	0.88814706	A	0.8873042	A	1.00058439672587	0	lncRNA	TCONS_00004484	NA	NA	NA	NA	XLOC_002377	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002377), lincRNA [TCONS_00004484]"	chr2:165509903-165509844	hs|2q24.3	Agilent_HUMAN_G3V2	TCONS_00004484	TCONS_00004484	chr2	165509844	165509903	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49172_PI429285431	0.9011146	A	0.90343463	A	0.998393170082439	0	lncRNA	52997-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00021317 range=chr4:141363416-141420653 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021317 range=chr4:141363416-141420653 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	141363416	141366415	-	NA	NA	NA	NA	LOC152586	NA	chr4:141364529-141419501	inter
CUST_41109_PI429285431	4.3557305	P	4.540488	P	0.879796946971914	0	lncRNA	41856-1_{1..73}	ENST00000582622 ncrna:miRNA chromosome:GRCh37:7:75544515:75544587:1 gene:ENSG00000265020 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582622 ncrna:miRNA chromosome:GRCh37:7:75544515:75544587:1 gene:ENSG00000265020 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 75544515	 75544587	+	ENSG00000265020	ENST00000582622	NA	NA	POR	NA	chr7:75544420-75554587	inner
CUST_8194_PI429285431	0.884706	A	0.88498247	A	0.99980838395969	0	lncRNA	9792-1_{1..3000}	lnc-HIST1H2BJ-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HIST1H2BJ-1:1	chr6	 27110962	 27113961	-	lnc-HIST1H2BJ-1	lnc-HIST1H2BJ-1:1	ENSG00000248252	ENST00000510425	HIST1H4I	"hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00chr6:27107088-27107457"	NA	inner
CUST_51258_PI429285431	4.7384152	P	2.2000568	A	5.80927610368574	0	lncRNA	54865-2_{3001..4285}	hg19_lincRNAsTranscripts_TCONS_l2_00008956 range=chr15:28943751-28948787 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008956 range=chr15:28943751-28948787 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 28946751	 28948035	-	NA	NA	NA	NA	LOC653720	NA	chr15:28947100-28958787	inter
LNCA_21_P0010723	0.97252595	A	0.8931032	A	1.05659519193863	0	lncRNA	ENST00000417260	NA	AB007962	NA	Hs.662922	XLOC_l2_000401	NA	ENST00000417260	THC2514997	NA	"BROAD Institute lincRNA (XLOC_l2_000401), lincRNA [TCONS_l2_00002175]"	chr1:143720342-143720401	hs|1q21.1	Agilent_HUMAN_G3V2	ENST00000417260	ENST00000417260	chr1	143720342	143720401	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13224_PI429285431	0.8984278	A	0.9089389	A	0.992740737329506	0	lncRNA	14852-1_{1..219}	lnc-SOCS6-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOCS6-1:4	chr18	 68003294	 68003512	+	lnc-SOCS6-1	lnc-SOCS6-1:4	XLOC_012709	linc-C18orf55-9	SOCS6	NA	chr18:67993294-67997434	inter
CUST_22169_PI429285431	3.6035552	A	4.0265875	A	0.745855314462282	0	lncRNA	23771-1_{1..418}	lnc-GJA10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GJA10-2:1	chr6	 90661350	 90661767	+	lnc-GJA10-2	lnc-GJA10-2:1	ENSG00000226455.1	RP3-512E2.2	BACH2	"hg19_refFlat_BACH2:range=chr6:90642127-907185635'pad=0,hg19_refFlat_BACH2:range=chr6:90642127-907185635'pad=0 3'pad=0 strand=- repeatMasking=none,-94.90chr6:90651350-90671708"	NA	inner
LNCA_19_P00322611	2.3375778	A	0.8901604	A	2.72719413124059	0	lncRNA	ENST00000523831	NA	NA	NA	NA	XLOC_006883	NA	ENST00000523831	THC2712518	NA	"BROAD Institute lincRNA (XLOC_006883), lincRNA [TCONS_00014809]"	chr8:101513237-101513296	hs|8q22.2	Agilent_HUMAN_G3V2	ENST00000523831	ENST00000523831	chr8	101513237	101513296	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12045_PI429285431	1.1723725	A	1.7659626	A	0.662691766444118	0	lncRNA	13630-1_{1..536}	lnc-WFDC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WFDC1-1:1	chr16	 84376671	 84377206	+	lnc-WFDC1-1	lnc-WFDC1-1:1	XLOC_011804	linc-ATP2C2	NA	NA	NA	inter
CUST_10518_PI429285431	1.832443	A	2.0135012	A	0.882055781320819	0	lncRNA	12046-1_{1..1339}	lnc-BNIP1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BNIP1-4:1	chr5	172950400	172951738	+	lnc-BNIP1-4	lnc-BNIP1-4:1	XLOC_004641	linc-CPEB4-4	NA	NA	NA	inter
CUST_1201_PI429285431	0.9094969	A	0.91252744	A	0.997901594481116	0	lncRNA	1192-1_{1..309}	"transcript_id ""ENST00000422899.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422899.1"" | genecode_v17"	chr2	199055688	199055996	-	ENSG00000237035.1	ENST00000422899.1	AC109589.1	AC109589.1-002	NA	NA	NA	inter
CUST_10849_PI429285431	0.8881928	A	0.8914358	A	0.997754648275385	0	lncRNA	12387-1_{1..610}	lnc-LY86-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LY86-2:1	chr6	  6706603	  6707212	+	lnc-LY86-2	lnc-LY86-2:1	XLOC_005147	linc-RREB1-6	NA	NA	NA	inter
CUST_12920_PI429285431	1.0196439	A	1.3433168	A	0.799033059434519	0	lncRNA	14548-1_{1..320}	lnc-TMEM132B-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132B-3:6	chr12	126591590	126591909	+	lnc-TMEM132B-3	lnc-TMEM132B-3:6	XLOC_009936	linc-TMEM132C-13	NA	NA	NA	inter
CUST_20418_PI429285431	0.90205526	A	0.91245884	A	0.992814726259008	0	lncRNA	22060-1_{1..651}	lnc-FAM50B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FAM50B-1:3	chr6	  3856797	  3857447	+	lnc-FAM50B-1	lnc-FAM50B-1:3	ENSG00000238158.1	RP11-420L9.4	FAM50B	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90chr6:3849632-3851551"	NA	inter
CUST_23162_PI429285431	1.8754437	A	1.416294	A	1.37473133597651	0	lncRNA	24733-1_{1..806}	lnc-GPR26-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR26-1:1	chr10	125536904	125537709	+	lnc-GPR26-1	lnc-GPR26-1:1	ENSG00000231138.1	RP11-391M7.3	CPXM2	NA	chr10:125526904-125547265	inner
LNCA_21_P0002267	2.7508292	A	0.90865004	A	3.58551203475022	0	lncRNA	TCONS_00003812	NA	NA	NA	NA	XLOC_001614	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001614), lincRNA [TCONS_00003812]"	chr2:107202441-107277026	hs|2q12.2	Agilent_HUMAN_G3V2	TCONS_00003812	TCONS_00003812	chr2	107202441	107277026	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19491_PI429285431	0.95394987	A	0.88852495	A	1.04639309076454	0	lncRNA	21147-1_{1..414}	lnc-CA5A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CA5A-2:1	chr16	 88134300	 88134713	-	lnc-CA5A-2	lnc-CA5A-2:1	ENSG00000205037.2	RP11-863P13.4	NA	NA	NA	inter
CUST_31570_PI429285431	3.0445356	P	2.7211561	A	1.25125817948376	0	lncRNA	33327-1_{1..683}	n338067|AL109711|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|454|NULL|-1.2823900|-0.4070479	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338067|AL109711|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|454|NULL|-1.2823900|-0.4070479	chr15	 79198468	 79199150	+	NA	NA	NA	NA	MORF4L1	NA	chr15:79188468-79190075	inter
CUST_26005_PI429285431	7.1091638	P	7.3903375	P	0.822921259869676	0	lncRNA	27524-1_{1..174}	lnc-ABHD12B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ABHD12B-3:1	chr14	 51332232	 51332405	+	lnc-ABHD12B-3	lnc-ABHD12B-3:1	ENSG00000258687.1	RP11-218E20.2	ABHD12B	NA	chr14:51338878-51342377	inter
CUST_40243_PI429285431	6.5707664	P	5.202652	P	2.58132966200182	0	lncRNA	41061-1_{1..3000}	n408151|NR_028130|lncRNA|Homosapiens||RefGeneNoncode|NR_028130||2.2437400|-0.3840758	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408151|NR_028130|lncRNA|Homosapiens||RefGeneNoncode|NR_028130||2.2437400|-0.3840758	chr14	 35179587	 35182586	-	NA	NA	NA	NA	CFL2	NA	chr14:35169587-35184029	inter
CUST_28174_PI429285431	0.89531773	A	0.89385045	A	1.00101755835666	0	lncRNA	29800-1_{1..602}	n325452|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323347|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323347|-0.8259000|-0.2626320	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325452|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323347|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323347|-0.8259000|-0.2626320	chr2	  6786750	  6787351	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32898_PI429285431	1.8974143	A	1.3273497	A	1.48459004508627	0	lncRNA	34524-1_{1..1664}	n339567|AL133627|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2009|NULL|-1.0623900|-0.3929611	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339567|AL133627|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2009|NULL|-1.0623900|-0.3929611	chr3	133871487	133873150	-	NA	NA	NA	NA	RYK	NA	chr3:133875978-133883112	inter
CUST_21199_PI429285431	11.690843	P	11.268127	P	1.34044869318849	0	lncRNA	22824-1_{1..463}	lnc-ACSL6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACSL6-1:1	chr5	131529085	131529547	-	lnc-ACSL6-1	lnc-ACSL6-1:1	ENSG00000248721.1	AC063976.6	P4HA2	NA	chr5:131528303-131539261	inner
CUST_485_PI429285431	2.2089617	A	3.3083692	P	0.466708128638317	0	lncRNA	476-1_{1..535}	"transcript_id ""ENST00000419983.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419983.1"" | genecode_v17"	chr1	174084521	174085055	-	ENSG00000227373.1	ENST00000419983.1	RP11-160H22.5	RP11-160H22.5-004	RABGAP1L	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80chr1:174128634-174139142"	NA	inner
CUST_536_PI429285431	5.046949	P	5.5331116	P	0.713921522260596	0	lncRNA	528-1_{1..835}	"transcript_id ""ENST00000422480.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422480.1"" | genecode_v17"	chr1	198952450	198953284	+	ENSG00000225172.1	ENST00000422480.1	RP11-16L9.2	RP11-16L9.2-001	NA	NA	NA	inter
CUST_27125_PI429285431	1.3252577	A	0.91055244	A	1.33302631439396	0	lncRNA	28660-1_{1..653}	n324240|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326054|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326054|-1.0741300|-0.3919234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324240|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326054|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326054|-1.0741300|-0.3919234	chr7	 15072356	 15073008	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009793	0.894379	A	0.89185226	A	1.0017529373085	0	lncRNA	TCONS_00027597	NA	NA	NA	NA	XLOC_013119	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013119), lincRNA [TCONS_00027597]"	chr19:51319489-51320674	hs|19q13.33	Agilent_HUMAN_G3V2	TCONS_00027597	TCONS_00027597	chr19	 51319489	 51320674	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35100_PI429285431	0.90400577	A	0.8964132	A	1.00527664118037	0	lncRNA	36507-1_{1..672}	n342069|AF087996|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4550|NULL|-1.0640400|-0.2313799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342069|AF087996|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4550|NULL|-1.0640400|-0.2313799	chr12	132241513	132242184	-	NA	NA	NA	NA	SFSWAP	NA	chr12:132231513-132252592	inner
CUST_15296_PI429285431	1.3611623	A	0.9016614	A	1.37506603208467	0	lncRNA	16973-1_{1..558}	lnc-RNASE10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNASE10-1:1	chr14	 20989845	 20990402	+	lnc-RNASE10-1	lnc-RNASE10-1:1	XLOC_010750	linc-ANG	NA	NA	NA	inter
CUST_6215_PI429285431	0.9003155	A	0.9168234	A	0.988622810989532	0	lncRNA	6141-1_{1..2330}	"transcript_id ""ENST00000592021.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592021.1"" | genecode_v17"	chr18	 56419380	 56421709	+	ENSG00000267010.1	ENST00000592021.1	RP11-108P20.1	RP11-108P20.1-001	MALT1	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr18:56409380-56417370"	NA	inter
CUST_20333_PI429285431	6.0050693	P	5.9062448	P	1.07090054307554	0	lncRNA	21976-1_{1..597}	lnc-TMEM41B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM41B-2:1	chr11	  9454686	  9455282	-	lnc-TMEM41B-2	lnc-TMEM41B-2:1	ENSG00000254397.1	CTD-2371O3.2	IPO7	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70chr11:9444686-9465033"	NA	inner
CUST_31065_PI429285431	1.2321266	A	0.90304077	A	1.25621711482229	0	lncRNA	32855-1_{1..382}	n337296|BC128520|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389885|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389885|-1.0826100|-0.0612038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337296|BC128520|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389885|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389885|-1.0826100|-0.0612038	chr2	 14775455	 14775836	-	NA	NA	NA	NA	FAM84A	NA	chr2:14772810-14780170	inner
CUST_13405_PI429285431	1.0483959	A	1.4488105	A	0.757640522126693	0	lncRNA	15042-1_{1..393}	lnc-KCNJ3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNJ3-1:2	chr2	156345609	156346001	+	lnc-KCNJ3-1	lnc-KCNJ3-1:2	XLOC_001715	linc-GPD2-3	NA	NA	NA	inter
LNCA_21_P0014093	3.879881	P	1.9285507	A	3.86730969398418	0	lncRNA	XR_108413	XR_108413	XR_108413	NA	Hs.191841	LOC100507039	uncharacterized LOC100507039	NA	THC2602408	NA	"PREDICTED: Homo sapiens hypothetical LOC100507039, transcript variant 1 (LOC100507039), miscRNA [XR_108413]"	chr2:197128811-197128870	hs|2q32.3	Agilent_HUMAN_G3V2	XR_108413	XR_108413	chr2	197128811	197128870	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41401_PI429285431	3.6873648	P	3.346541	P	1.26647956591955	0	lncRNA	42516-1_{1..82}	ENST00000459199 ncrna:miRNA chromosome:GRCh37:14:78864221:78864302:-1 gene:ENSG00000239163 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459199 ncrna:miRNA chromosome:GRCh37:14:78864221:78864302:-1 gene:ENSG00000239163 gene_biotype:miRNA transcript_biotype:miRNA	chr14	 78864221	 78864302	-	ENSG00000239163	ENST00000459199	NA	NA	NRXN3	NA	chr14:78870093-78874302	inter
CUST_5245_PI429285431	0.9031422	A	0.9766236	A	0.950341937218894	0	lncRNA	5186-1_{1..264}	"transcript_id ""ENST00000560446.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560446.1"" | genecode_v17"	chr15	 77336022	 77336285	+	ENSG00000259652.1	ENST00000560446.1	RP11-797A18.3	RP11-797A18.3-001	TSPAN3	NA	chr15:77336359-77347502	inner
CUST_22652_PI429285431	2.0905597	A	1.4942293	A	1.51186612994615	0	lncRNA	24236-2_{3001..4094}	lnc-DTWD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-DTWD1-1:1	chr15	 49947336	 49948429	+	lnc-DTWD1-1	lnc-DTWD1-1:1	ENSG00000261597.1	RP11-353B9.1	DTWD1	NA	chr15:49934336-49937333	inter
CUST_8547_PI429285431	6.409776	P	6.762661	P	0.783016709538791	0	lncRNA	10106-1_{1..2287}	lnc-GRM6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRM6-1:1	chr5	178366753	178369039	-	lnc-GRM6-1	lnc-GRM6-1:1	ENSG00000248595	XLOC_005104	ZNF454	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70chr5:178368194-178378084"	NA	inter
CUST_15903_PI429285431	6.246778	P	6.3378153	P	0.938847473673084	0	lncRNA	17596-1_{1..359}	lnc-TAOK3-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TAOK3-7:1	chr12	119393611	119393969	-	lnc-TAOK3-7	lnc-TAOK3-7:1	XLOC_010216	linc-TAOK3-1	NA	NA	NA	inter
CUST_602_PI429285431	0.91502607	A	0.9102457	A	1.00331899569695	0	lncRNA	594-1_{1..818}	"transcript_id ""ENST00000428673.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428673.1"" | genecode_v17"	chr1	232295837	232296654	+	ENSG00000235152.1	ENST00000428673.1	RP5-865N13.2	RP5-865N13.2-001	NA	NA	NA	inter
CUST_28726_PI429285431	1.3190567	A	1.1074834	A	1.15795027333537	0	lncRNA	30426-1_{1..918}	n326116|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046447|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046447|-1.1603400|-0.4019272	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326116|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046447|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046447|-1.1603400|-0.4019272	chr10	  2533974	  2534891	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1014_PI429285431	1.1995859	A	1.7623473	A	0.677005096699877	0	lncRNA	1003-1_{1..1792}	"transcript_id ""ENST00000457647.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000457647.2"" | genecode_v17"	chr2	108439519	108441310	-	ENSG00000230651.2	ENST00000457647.2	AC096655.2	AC096655.2-001	RGPD4	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90chr2:108443388-108453347"	NA	inter
LNCA_21_P0005005	0.91005456	A	0.92189306	A	0.991827752965689	0	lncRNA	TCONS_00012091	NA	NA	NA	NA	XLOC_005621	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005621), lincRNA [TCONS_00012091]"	chr6:15750219-15750160	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00012091	TCONS_00012091	chr6	 15750160	 15750219	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25597_PI429285431	0.91538054	A	0.9293567	A	0.990359237116567	0	lncRNA	27127-1_{1..2978}	lnc-RP11-625H11.1.1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-625H11.1.1-3:4	chr15	 63127282	 63130259	-	lnc-RP11-625H11.1.1-3	lnc-RP11-625H11.1.1-3:4	ENSG00000259370.1	RP11-1069G10.1	TLN2	"hg19_refFlat_TLN2:range=chr15:62939510-631328095'pad=0,hg19_refFlat_TLN2:range=chr15:62939510-631328095'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.40chr15:63117282-63136830"	NA	inner
CUST_23532_PI429285431	1.0910401	A	1.2203411	A	0.914274317873181	0	lncRNA	25099-1_{1..556}	lnc-GSN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GSN-1:1	chr9	124027432	124027987	+	lnc-GSN-1	lnc-GSN-1:1	ENSG00000244498.1	RP11-477J21.5	GSN	NA	chr9:124017432-124037464	inter
CUST_44734_PI429285431	0.89162415	A	0.90006816	A	0.994164153370834	0	lncRNA	49287-2_{3001..3165}	"gi|337298998|ref|NR_038989.1| Homo sapiens uncharacterized LOC100507584 (LOC100507584), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|337298998|ref|NR_038989.1| Homo sapiens uncharacterized LOC100507584 (LOC100507584), non-coding RNA"	Chr6	 33860288	 33860452	-	100507584	NR_038989.1	NA	NA	NA	NA	NA	inter
CUST_50144_PI429285431	2.7739782	A	3.0635383	P	0.818151487553155	0	lncRNA	53869-1_{1..2723}	hg19_lincRNAsTranscripts_TCONS_l2_00029159 range=chr9:100340-105266 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029159 range=chr9:100340-105266 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	   100340	   103062	-	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80"	NA	inter
CUST_47947_PI429285431	6.369277	P	5.794154	P	1.48980447412214	0	lncRNA	51839-1_{1..722}	"gi|410172463|ref|XR_171788.1| PREDICTED: Homo sapiens uncharacterized LOC100507540 (LOC100507540), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|410172463|ref|XR_171788.1| PREDICTED: Homo sapiens uncharacterized LOC100507540 (LOC100507540), misc_RNA"	NA	NA	NA	NA	NA	XR_171788.1	NA	NA	NA	NA	NA	Unknown
CUST_44909_PI429285431	1.4199764	A	1.8843509	A	0.724785249639787	0	lncRNA	49426-1_{1..716}	"gi|310119939|ref|XR_108763.1| PREDICTED: Homo sapiens uncharacterized LOC100506516 (LOC100506516), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119939|ref|XR_108763.1| PREDICTED: Homo sapiens uncharacterized LOC100506516 (LOC100506516), misc_RNA"	Chr7	 30429847	 30430562	+	100506516	XR_108763.2	NA	NA	NA	NA	NA	inter
CUST_40509_PI429285431	3.3387206	P	1.6186492	A	3.29452711351732	0	lncRNA	41273-2_{3001..4616}	n409499|NR_033884|lncRNA|Homosapiens||RefGeneNoncode|NR_033884||0.7701140|-0.2728197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409499|NR_033884|lncRNA|Homosapiens||RefGeneNoncode|NR_033884||0.7701140|-0.2728197	chr6	  3023389	  3025004	-	NA	NA	NA	NA	NQO2	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70chr6:3010389-3019994"	NA	inter
CUST_3309_PI429285431	0.88694113	A	1.0208194	A	0.91137817657284	0	lncRNA	3288-1_{1..904}	"transcript_id ""ENST00000520048.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520048.1"" | genecode_v17"	chr8	130364675	130365578	-	ENSG00000229140.4	ENST00000520048.1	CCDC26	CCDC26-003	NA	NA	NA	inter
LNCA_21_P0014116	0.89339215	A	1.2339948	A	0.789711360658421	0	lncRNA	ENST00000503006	XR_108488	XR_108488	NA	NA	LOC100507134	NA	ENST00000503006	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507134 (LOC100507134), miscRNA [XR_108488]"	chr3:131239630-131239689	hs|3q22.1	Agilent_HUMAN_G3V2	ENST00000503006	ENST00000503006	chr3	131239630	131239689	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32645_PI429285431	2.146198	A	2.5282292	A	0.767356452822992	0	lncRNA	34300-1_{1..2426}	n339266|AK026452|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1698|NULL|-0.8454230|-0.3835216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339266|AK026452|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1698|NULL|-0.8454230|-0.3835216	chr3	 20429740	 20432165	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36052_PI429285431	2.501746	A	3.1336734	P	0.645313718198926	0	lncRNA	37367-1_{1..3000}	n344648|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_196|NULL|-1.2619400|-0.2135339	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344648|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_196|NULL|-1.2619400|-0.2135339	chr17	 70419591	 70422590	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33423_PI429285431	0.8983978	A	0.9093743	A	0.992420540051393	0	lncRNA	35001-1_{1..779}	n340151|BC005018|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2611|NULL|-1.0446600|-0.2829940	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340151|BC005018|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2611|NULL|-1.0446600|-0.2829940	chr4	 84717588	 84718366	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12525_PI429285431	1.1961434	A	0.9066112	A	1.22224389565226	0	lncRNA	14136-1_{1..706}	lnc-MYC-2:29	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYC-2:29	chr8	129111616	129112321	+	lnc-MYC-2	lnc-MYC-2:29	XLOC_006925	linc-EFR3A-4	NA	NA	NA	inter
LNCA_21_P0008725	3.5475373	P	3.9859881	P	0.737926586339699	0	lncRNA	TCONS_00024073	NA	NA	NA	NA	XLOC_011433	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011433), lincRNA [TCONS_00024073]"	chr15:39048725-39048666	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00024073	TCONS_00024073	chr15	 39048666	 39048725	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006883	2.2957208	A	0.8908124	A	2.64800968727615	0	lncRNA	TCONS_00018247	NA	NA	NA	NA	XLOC_008525	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008525), lincRNA [TCONS_00018247]"	chr10:79952503-79952562	hs|10q22.3	Agilent_HUMAN_G3V2	TCONS_00018247	TCONS_00018247	chr10	 79952503	 79952562	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36638_PI429285431	1.1226298	A	0.99481076	A	1.09264067849385	0	lncRNA	37828-1_{1..2880}	n345131|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_680|NULL|-1.3489300|-0.2989282	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345131|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_680|NULL|-1.3489300|-0.2989282	chr11	117668682	117671561	-	NA	NA	NA	NA	DSCAML1	NA	chr11:117658682-117667976	inter
CUST_35531_PI429285431	6.6075373	P	6.301035	P	1.2367057671342	0	lncRNA	36950-1_{1..3000}	n342655|AK123107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5157|NULL|-0.7043500|-0.2690734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342655|AK123107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5157|NULL|-0.7043500|-0.2690734	chr17	   414736	   417735	-	NA	NA	NA	NA	VPS53	NA	chr17:411908-428180	inner
CUST_43150_PI429285431	4.0601797	P	4.2821918	P	0.857368845782159	0	lncRNA	47965-1_{1..648}	ENST00000594892 havana:sense_intronic chromosome:GRCh37:1:146139033:146158477:-1 gene:ENSG00000227733 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000594892 havana:sense_intronic chromosome:GRCh37:1:146139033:146158477:-1 gene:ENSG00000227733 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr1	146139033	146139680	-	ENSG00000227733	ENST00000594892	NA	NA	NA	NA	NA	inter
CUST_6750_PI429285431	0.9019786	A	0.911091	A	0.993703671108893	0	lncRNA	6698-1_{1..633}	"transcript_id ""ENST00000456634.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456634.1"" | genecode_v17"	chr20	 61665735	 61666367	-	ENSG00000125514.5	ENST00000456634.1	LINC00029	LINC00029-002	NA	NA	NA	inter
CUST_49438_PI429285431	0.89035237	A	0.88523483	A	1.0035535072117	0	lncRNA	53240-1_{1..1906}	hg19_lincRNAsTranscripts_TCONS_l2_00023281 range=chr5:178191876-178195869 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023281 range=chr5:178191876-178195869 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	178191876	178193781	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008411	0.8881831	A	0.88790417	A	1.00019335823437	0	lncRNA	TCONS_00022688	NA	NA	NA	NA	XLOC_010979	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010979), lincRNA [TCONS_00022688]"	chr14:26851516-26851457	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022688	TCONS_00022688	chr14	 26851457	 26851516	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37856_PI429285431	11.216473	P	11.214094	P	1.00165035748597	0	lncRNA	38947-1_{1..796}	n346386|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1936|NULL|-1.4988900|-0.1588102	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346386|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1936|NULL|-1.4988900|-0.1588102	chr2	 96479686	 96480481	+	NA	NA	NA	NA	NA	"hg19_refFlat_NEBL:range=chr10:21074812-214627625'pad=0,hg19_refFlat_NEBL:range=chr10:21074812-214627625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_NEBL:range=chr10:21074676-214627625'pad=0,hg19_refFlat_NEBL:range=chr10:21074676-214627625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
CUST_9396_PI429285431	0.88745326	A	0.886999	A	1.0003149186147	0	lncRNA	10900-1_{1..244}	lnc-FAM172A-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM172A-6:1	chr5	 92007191	 92007434	-	lnc-FAM172A-6	lnc-FAM172A-6:1	XLOC_004926	linc-ARRDC3-3	NA	NA	NA	inter
CUST_38587_PI429285431	0.89320356	A	0.92631066	A	0.977313211832554	0	lncRNA	39598-1_{1..3000}	n383639|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002sag.2||-1.1868700|-0.3192103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383639|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002sag.2||-1.1868700|-0.3192103	chr2	 60751632	 60754631	-	NA	NA	NA	NA	BCL11A	NA	chr2:60741632-60765350	inner
CUST_29995_PI429285431	7.3829303	P	4.777028	P	6.08772124599569	0	lncRNA	31761-1_{1..250}	n334375|S77359|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216720|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216720|-1.0924300|-0.3973430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334375|S77359|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216720|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216720|-1.0924300|-0.3973430	chr12	 46581573	 46581822	-	NA	NA	NA	NA	SLC38A1	NA	chr12:46576838-46591823	inner
CUST_41839_PI429285431	0.8871806	A	0.8940134	A	0.995275061751949	0	lncRNA	43465-1_{1..76}	ENST00000584704 ncrna:miRNA chromosome:GRCh37:22:41209887:41209962:-1 gene:ENSG00000266594 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584704 ncrna:miRNA chromosome:GRCh37:22:41209887:41209962:-1 gene:ENSG00000266594 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 41209887	 41209962	-	ENSG00000266594	ENST00000584704	NA	NA	SLC25A17	NA	chr22:41199887-41215392	inner
CUST_1531_PI429285431	3.3787615	P	3.506659	P	0.915164186024436	0	lncRNA	1518-1_{1..749}	"transcript_id ""ENST00000477099.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000477099.1"" | genecode_v17"	chr3	163192855	163193603	+	ENSG00000240792.1	ENST00000477099.1	RP11-418B12.1	RP11-418B12.1-001	NA	NA	NA	inter
CUST_24053_PI429285431	0.8894111	A	0.8867549	A	1.00184283347538	0	lncRNA	25605-1_{1..530}	lnc-PRR25-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRR25-2:1	chr16	   934943	   935472	+	lnc-PRR25-2	lnc-PRR25-2:1	ENSG00000260022.1	LA16c-306A4.1	LMF1	NA	chr16:924943-945090	inner
CUST_26364_PI429285431	1.0753598	A	0.8998796	A	1.12934024233617	0	lncRNA	27871-1_{1..3000}	lnc-GNG13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-GNG13-1:1	chr16	   954919	   957918	-	lnc-GNG13-1	lnc-GNG13-1:1	ENSG00000260316.1	LA16c-306A4.2	LMF1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60chr16:944919-965224"	NA	inner
CUST_12381_PI429285431	1.6602309	A	2.0375717	A	0.769855294027202	0	lncRNA	13994-1_{1..1710}	lnc-POLR2B-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLR2B-1:4	chr4	 58045310	 58047019	+	lnc-POLR2B-1	lnc-POLR2B-1:4	XLOC_003547	linc-LPHN3-8	NA	NA	NA	inter
CUST_6266_PI429285431	0.9029634	A	0.90329415	A	0.999770767847736	0	lncRNA	6191-1_{1..922}	"transcript_id ""ENST00000579833.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579833.1"" | genecode_v17"	chr18	 73968846	 73969767	+	ENSG00000264212.1	ENST00000579833.1	RP11-94B19.3	RP11-94B19.3-001	NA	NA	NA	inter
CUST_33532_PI429285431	9.245417	P	8.85684	P	1.30910153659175	0	lncRNA	35100-1_{1..2199}	n340273|BC043512|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2734|NULL|-0.9450140|-0.4090214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340273|BC043512|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2734|NULL|-0.9450140|-0.4090214	chr4	173555834	173558032	-	NA	NA	NA	NA	GALNTL6	NA	chr4:173545834-173658029	inner
LNCA_21_P0006797	4.332822	P	4.6354074	P	0.810798092607964	0	lncRNA	ENST00000434988	NA	NA	NA	NA	XLOC_008972	NA	ENST00000434988	NA	NA	"BROAD Institute lincRNA (XLOC_008972), lincRNA [TCONS_00018061]"	chr10:123375023-123374964	hs|10q26.13	Agilent_HUMAN_G3V2	ENST00000434988	ENST00000434988	chr10	123374964	123375023	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29589_PI429285431	6.4864044	P	6.6124725	P	0.916325390051122	0	lncRNA	31349-1_{1..1125}	n333096|AF306690|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076878|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076878|-1.3916500|-0.3570146	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333096|AF306690|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076878|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076878|-1.3916500|-0.3570146	chr1	114455537	114456661	+	NA	NA	NA	NA	AP4B1	NA	chr1:114445537-114447741	inner
LNCA_21_P0012462	0.8924061	A	0.8901959	A	1.00153316800062	0	lncRNA	TCONS_l2_00019558	NA	NA	NA	NA	XLOC_l2_010370	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010370), lincRNA [TCONS_l2_00019558]"	chr3:140311155-140311096	hs|3q23	Agilent_HUMAN_G3V2	TCONS_l2_00019558	TCONS_l2_00019558	chr3	140311096	140311155	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42822_PI429285431	2.021638	A	2.7943423	A	0.585319277602227	0	lncRNA	45832-1_{1..73}	ENST00000363336 ncrna:snoRNA chromosome:GRCh37:15:86716429:86716501:-1 gene:ENSG00000200206 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363336 ncrna:snoRNA chromosome:GRCh37:15:86716429:86716501:-1 gene:ENSG00000200206 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 86716429	 86716501	-	ENSG00000200206	ENST00000363336	NA	NA	AGBL1	NA	chr15:86706429-86726501	inner
CUST_17703_PI429285431	5.13313	P	5.0086136	P	1.09014224921537	0	lncRNA	19433-1_{1..373}	lnc-GGTLC1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GGTLC1-4:1	chr20	 24164310	 24164682	-	lnc-GGTLC1-4	lnc-GGTLC1-4:1	XLOC_013699	linc-GGTLC1-1	NA	NA	NA	inter
CUST_1219_PI429285431	1.0526451	A	2.904737	A	0.276990442050516	0	lncRNA	1210-1_{1..646}	"transcript_id ""ENST00000438070.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438070.1"" | genecode_v17"	chr2	207731519	207732164	+	ENSG00000229321.1	ENST00000438070.1	AC008269.2	AC008269.2-001	NA	NA	NA	inter
LNCA_21_P0011896	3.3451478	P	3.2785792	P	1.04722293580594	0	lncRNA	ENST00000451070	NA	NA	NA	NA	XLOC_l2_007834	NA	ENST00000451070	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007834), lincRNA [TCONS_l2_00014343]"	chr2:242914334-242914393	hs|2q37.3	Agilent_HUMAN_G3V2	ENST00000451070	ENST00000451070	chr2	242914334	242914393	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16307_PI429285431	7.964012	P	7.7419815	P	1.16637402782832	0	lncRNA	18013-1_{1..244}	lnc-INO80C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INO80C-1:1	chr18	 33025490	 33025733	-	lnc-INO80C-1	lnc-INO80C-1:1	XLOC_012812	linc-ZNF396	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70"	NA	inter
CUST_50046_PI429285431	7.9194226	P	8.035998	P	0.922374542290852	0	lncRNA	53782-1_{1..1653}	hg19_lincRNAsTranscripts_TCONS_l2_00027748 range=chr8:49293272-49297763 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027748 range=chr8:49293272-49297763 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 49293272	 49294924	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41141_PI429285431	0.8820809	A	1.0138776	A	0.912694093432872	0	lncRNA	41933-1_{1..66}	ENST00000362177 ncrna:miRNA chromosome:GRCh37:5:149112388:149112453:1 gene:ENSG00000199047 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362177 ncrna:miRNA chromosome:GRCh37:5:149112388:149112453:1 gene:ENSG00000199047 gene_biotype:miRNA transcript_biotype:miRNA	chr5	149112388	149112453	+	ENSG00000199047	ENST00000362177	NA	NA	PPARGC1B	NA	chr5:149109815-149122453	inner
CUST_43877_PI429285431	4.9011226	P	5.0082693	P	0.928422441157319	0	lncRNA	48596-1_{1..1432}	"gi|336595103|ref|NR_038942.1| Homo sapiens uncharacterized LOC100630918 (LOC100630918), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336595103|ref|NR_038942.1| Homo sapiens uncharacterized LOC100630918 (LOC100630918), non-coding RNA"	Chr2	 85764590	 85766021	-	100630918	NR_038942.1	NA	NA	NA	NA	NA	inter
CUST_7054_PI429285431	1.4364595	A	1.3592131	A	1.05500248710253	0	lncRNA	6999-1_{1..626}	"transcript_id ""ENST00000446884.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446884.1"" | genecode_v17"	chrX	 46185359	 46185984	-	ENSG00000236751.1	ENST00000446884.1	RP1-30G7.2	RP1-30G7.2-001	NA	NA	NA	inter
CUST_7162_PI429285431	0.8945797	A	0.8991057	A	0.996867731680993	0	lncRNA	7247-1_{1..295}	"transcript_id ""ENST00000579497.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579497.1"" | genecode_v17"	chr1	222881579	222881873	-	ENSG00000263877.1	ENST00000579497.1	RN7SL276P	RN7SL276P-201	BROX	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10chr1:222885906-222891873"	NA	inner
CUST_48392_PI429285431	1.8039392	A	2.321794	A	0.698409554105631	0	lncRNA	52245-1_{1..648}	hg19_lincRNAsTranscripts_TCONS_l2_00001460 range=chr1:116997687-117021488 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001460 range=chr1:116997687-117021488 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	116997687	116998334	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18351_PI429285431	5.778511	P	5.8942704	P	0.922896392369997	0	lncRNA	20079-1_{1..539}	lnc-FBXO25-5:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FBXO25-5:7	chr8	  1212415	  1212953	+	lnc-FBXO25-5	lnc-FBXO25-5:7	ENSG00000254269	CTD-2281E23.2	NA	NA	NA	inter
CUST_5488_PI429285431	1.6379588	A	1.1918157	A	1.36239316284672	0	lncRNA	5421-1_{1..568}	"transcript_id ""ENST00000567765.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567765.1"" | genecode_v17"	chr16	 31560464	 31561031	-	ENSG00000261475.2	ENST00000567765.1	CTD-2014E2.6	CTD-2014E2.6-001	NA	NA	NA	inter
CUST_36370_PI429285431	8.319366	P	8.407637	P	0.940649396620055	0	lncRNA	37590-1_{1..1373}	n344887|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_436|NULL|-1.4120400|-0.4059858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344887|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_436|NULL|-1.4120400|-0.4059858	chr6	 15708732	 15710104	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002382	0.89696085	A	1.2339416	A	0.791696429472144	0	lncRNA	TCONS_00004100	NA	NA	NA	NA	XLOC_001953	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001953), lincRNA [TCONS_00004100]"	chr2:3618556-3618497	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00004100	TCONS_00004100	chr2	  3618497	  3618556	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27830_PI429285431	4.674556	P	4.7071977	P	0.97762853484096	0	lncRNA	29416-1_{1..833}	n325058|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078115|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078115|-1.1345300|-0.2254904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325058|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078115|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078115|-1.1345300|-0.2254904	chr20	 16786606	 16787438	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51149_PI429285431	5.563734	P	5.7739487	P	0.864408581574269	0	lncRNA	54772-1_{1..1962}	hg19_lincRNAsTranscripts_TCONS_l2_00007611 range=chr14:19604880-19619489 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007611 range=chr14:19604880-19619489 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 19604880	 19606841	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00315738	3.628485	P	3.9250844	P	0.814169227931182	0	lncRNA	XR_113168	XR_113168	XR_113168	NA	NA	LOC100506342	uncharacterized LOC100506342	NA	THC2607998	NA	"PREDICTED: Homo sapiens hypothetical LOC100506342 (LOC100506342), miscRNA [XR_113168]"	chr8:90733509-90733450	hs|8q21.3	Agilent_HUMAN_G3V2	XR_113168	XR_113168	chr8	 90733450	 90733509	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22290_PI429285431	0.9082672	A	0.928712	A	0.985928684116965	0	lncRNA	23890-1_{1..776}	lnc-RP11-124K4.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RP11-124K4.2.1-2:1	chr16	  6142422	  6143197	+	lnc-RP11-124K4.2.1-2	lnc-RP11-124K4.2.1-2:1	ENSG00000257180.1	RP11-509E10.1	RBFOX1	NA	chr16:6132422-6152955	inner
CUST_46588_PI429285431	0.8897788	A	0.8922708	A	0.998274168189445	0	lncRNA	50771-2_{3001..3445}	"gi|371872713|ref|NR_045816.1| Homo sapiens activating transcription factor 7 interacting protein 2 (ATF7IP2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371872713|ref|NR_045816.1| Homo sapiens activating transcription factor 7 interacting protein 2 (ATF7IP2), transcript variant 4, non-coding RNA"	Chr16	 10482912	 10483356	+	80063	NR_045816.1	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80"	NA	inter
LNCA_21_P0004499	0.91010404	A	0.9260646	A	0.988997952965238	0	lncRNA	TCONS_00010659	NA	NA	NA	NA	XLOC_004325	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004325), lincRNA [TCONS_00010659]"	chr5:29165135-29183425	hs|5p13.3	Agilent_HUMAN_G3V2	TCONS_00010659	TCONS_00010659	chr5	 29165135	 29183425	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11945_PI429285431	0.9191062	A	1.7254304	A	0.571836969921547	0	lncRNA	13525-1_{1..377}	lnc-KHDRBS3-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KHDRBS3-4:6	chr8	135854697	135855073	+	lnc-KHDRBS3-4	lnc-KHDRBS3-4:6	XLOC_006935	linc-KHDRBS3-3	NA	NA	NA	inter
LNCA_21_P0014597	2.7549953	A	3.0625815	P	0.807992496261574	0	lncRNA	XR_110467	XR_110467	XR_110467	NA	NA	LOC100507539	uncharacterized LOC100507539	ENST00000506914	THC2513386	NA	"PREDICTED: Homo sapiens hypothetical LOC100507539 (LOC100507539), miscRNA [XR_110467]"	chr10:46951742-46966496	hs|10q11.22	Agilent_HUMAN_G3V2	XR_110467	XR_110467	chr10	 46951742	 46966496	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35330_PI429285431	9.09516	P	9.146955	P	0.964735259067682	0	lncRNA	36739-1_{1..1070}	n342368|BC022083|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4860|NULL|1.2669800|-0.1174960	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n342368|BC022083|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4860|NULL|1.2669800|-0.1174960	chr13	 19919188	 19920257	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47304_PI429285431	6.718377	P	6.9517813	P	0.85062531736896	0	lncRNA	51369-2_{3001..6000}	"gi|386781498|ref|NR_048537.1| Homo sapiens solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 (SLC9A8), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386781498|ref|NR_048537.1| Homo sapiens solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 (SLC9A8), transcript variant 3, non-coding RNA"	Chr20	 48432250	 48435249	+	23315	NR_048537.1	NA	NA	NA	NA	NA	inter
CUST_32107_PI429285431	2.5763078	A	2.9905138	A	0.750432388127354	0	lncRNA	33810-1_{1..721}	n338672|BC033984|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1086|NULL|-1.0936200|-0.3243492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338672|BC033984|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1086|NULL|-1.0936200|-0.3243492	chr13	 43502029	 43502749	+	NA	NA	NA	NA	EPSTI1	NA	chr13:43492029-43512735	inner
LNCA_33_P3259077	9.296615	P	11.10069	P	0.286364587147511	0	lncRNA	XR_109112	XR_109112	XR_109112	   338797	Hs.592007	LOC338797	uncharacterized LOC338797	NA	NP1153976	NA	"PREDICTED: Homo sapiens hypothetical LOC338797 (LOC338797), miscRNA [XR_109112]"	chr12:131850872-131850931	hs|12q24.33	Agilent_HUMAN_G3V2	XR_109112	XR_109112	chr12	131850872	131850931	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50183_PI429285431	0.91152096	A	0.91178	A	0.999820463272995	0	lncRNA	53909-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00028700 range=chr9:35406774-35483185 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028700 range=chr9:35406774-35483185 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 35406774	 35409773	+	NA	NA	NA	NA	UNC13B	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60chr9:35396774-35405332"	NA	inter
CUST_36035_PI429285431	3.6605253	P	4.006619	P	0.786711348451501	0	lncRNA	37360-1_{1..2557}	n344641|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_189|NULL|-1.6499900|-0.2899650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344641|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_189|NULL|-1.6499900|-0.2899650	chr12	 46773049	 46775605	-	NA	NA	NA	NA	SLC38A2	"hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90chr12:46763049-46766645"	NA	inter
CUST_468_PI429285431	0.9075326	A	0.92051536	A	0.991041405996792	0	lncRNA	459-1_{1..469}	"transcript_id ""ENST00000416401.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416401.1"" | genecode_v17"	chr1	163229640	163230108	+	ENSG00000237756.1	ENST00000416401.1	RP11-77M5.1	RP11-77M5.1-001	NA	NA	NA	inner
CUST_33905_PI429285431	6.1337743	P	5.632833	P	1.41513658044673	0	lncRNA	35447-1_{1..2630}	n340697|AX747001|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3160|NULL|12.0537000|-0.0585208	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340697|AX747001|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3160|NULL|12.0537000|-0.0585208	chr5	154135134	154137763	+	NA	NA	NA	NA	LARP1	NA	chr5:154125134-154193768	inner
LNCA_21_P0001728	0.9064196	A	0.9154085	A	0.993788739437818	0	lncRNA	TCONS_00002380	NA	NA	NA	NA	XLOC_000830	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000830), lincRNA [TCONS_00002380]"	chr1:50723814-50723755	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_00002380	TCONS_00002380	chr1	 50723755	 50723814	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_354_PI429201921	0.90042436	A	1.7590444	A	0.551479804655032	0	lncRNA	228-3_{6001..8436}	TC0Y000307.hg.1	 TCONS_00017586-XLOC_008319 // Rinn lincRNAs // linc-AMELY-5 chrY:-:9544434-9552871 // chrY // 100 // 100 // 0 // --- // 0///TCONS_00017597-XLOC_008319 // Rinn lincRNAs // linc-AMELY-5 chrY:-:9544434-9548661 // chrY // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:9544434-9548661	NA	Affy_HUMAN_HTA2.0	TCONS_00017597-XLOC_008319	linc-AMELY-5	chrY	  9544434	  9548661	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29669_PI429285431	2.232173	A	3.0652096	A	0.561346469952702	0	lncRNA	31431-1_{1..334}	n333306|AY124789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084593|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084593|2.2598300|-0.1351178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333306|AY124789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084593|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084593|2.2598300|-0.1351178	chr7	142161920	142162253	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014424	0.90309525	A	0.9105502	A	0.994845950355084	0	lncRNA	XR_109708	XR_109708	XR_109708	NA	Hs.652898	MGC15705	uncharacterized protein MGC15705	NA	THC2483933	NA	"PREDICTED: Homo sapiens hypothetical protein MGC15705 (MGC15705), miscRNA [XR_109708]"	chr22:31726115-31726174	hs|22q12.2	Agilent_HUMAN_G3V2	XR_109708	XR_109708	chr22	 31726115	 31726174	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010119	0.90115905	A	0.9077638	A	0.995432399520061	0	lncRNA	TCONS_00028667	NA	NA	NA	NA	XLOC_013742	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013742), lincRNA [TCONS_00028667]"	chr20:38285105-38285046	hs|20q12	Agilent_HUMAN_G3V2	TCONS_00028667	TCONS_00028667	chr20	 38285046	 38285105	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3789_PI429285431	3.8816824	P	4.3580847	P	0.718767807836413	0	lncRNA	3757-1_{1..652}	"transcript_id ""ENST00000598903.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598903.1"" | genecode_v17"	chr10	109517591	109518242	-	ENSG00000229981.2	ENST00000598903.1	RP11-215N21.1	RP11-215N21.1-013	LOC100128304	NA	chr10:109673555-109675061	inter
CUST_18140_PI429285431	5.7634516	P	6.0245104	P	0.8344752697085	0	lncRNA	19875-1_{1..387}	lnc-KLF14-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KLF14-2:7	chr7	130737184	130737570	-	lnc-KLF14-2	lnc-KLF14-2:7	ENSG00000231721	AC058791.2	NA	"hg19_refFlat_HHLA3:range=chr1:70820635-708322015'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708322015'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_HHLA3:range=chr1:70820635-708322145'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708322145'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00"	NA	inter
CUST_50170_PI429285431	10.894478	P	10.889383	P	1.00353782827838	0	lncRNA	53896-1_{1..269}	hg19_lincRNAsTranscripts_TCONS_l2_00028644 range=chr9:21696914-21699564 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028644 range=chr9:21696914-21699564 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 21696914	 21697182	+	NA	NA	NA	NA	MTAP	NA	chr9:21695173-21709564	inter
CUST_46176_PI429285431	5.605344	P	5.7468786	P	0.906554337098455	0	lncRNA	50423-1_{1..2234}	"gi|310123021|ref|XR_110106.1| PREDICTED: Homo sapiens SACS antisense RNA 1 (SACS-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310123021|ref|XR_110106.1| PREDICTED: Homo sapiens SACS antisense RNA 1 (SACS-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_110106.1	NA	NA	NA	NA	NA	Unknown
CUST_38488_PI429285431	1.8696738	A	2.916274	A	0.48410765088966	0	lncRNA	39505-1_{1..1232}	n383007|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ezq.2||0.1235460|-0.1825651	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383007|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ezq.2||0.1235460|-0.1825651	chr16	 70802892	 70804123	-	NA	NA	NA	NA	VAC14	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40chr16:70792892-70814124"	NA	inner
CUST_49230_PI429285431	11.679652	P	11.163048	P	1.43058379049805	0	lncRNA	53050-1_{1..700}	hg19_lincRNAsTranscripts_TCONS_l2_00020957 range=chr4:188891435-188892472 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020957 range=chr4:188891435-188892472 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	188891435	188892134	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32016_PI429285431	0.91230816	A	0.9005738	A	1.00816680645196	0	lncRNA	33737-1_{1..2032}	n338581|AK074383|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|987|NULL|0.8466080|-0.2246979	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338581|AK074383|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|987|NULL|0.8466080|-0.2246979	chr1	235710984	235713015	-	NA	NA	NA	NA	GNG4	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30chr1:235710985-235722998"	NA	inner
CUST_18202_PI429285431	4.789158	P	5.5333357	P	0.597008054180702	0	lncRNA	19937-1_{1..391}	lnc-HIC2-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HIC2-1:8	chr22	 21823419	 21823809	+	lnc-HIC2-1	lnc-HIC2-1:8	ENSG00000206140	KB-1323B2.6	TMEM191C	NA	chr22:21821459-21824224	inner
LNCA_21_P0004196	1.0434653	A	2.3345146	A	0.408653699427572	0	lncRNA	TCONS_00009833	NA	NA	NA	NA	XLOC_004250	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004250), lincRNA [TCONS_00009833]"	chr5:1948887-1948946	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00009833	TCONS_00009833	chr5	  1948887	  1948946	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001804	4.505719	P	5.0521035	P	0.684733973724928	0	lncRNA	ENST00000437798	NA	BC055007	NA	Hs.591591	XLOC_001300	NA	ENST00000437798	THC2612334	NA	"BROAD Institute lincRNA (XLOC_001300), lincRNA [TCONS_00002784]"	chr2:202532-202591	hs|2p25.3	Agilent_HUMAN_G3V2	ENST00000437798	ENST00000437798	chr2	   202532	   202591	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47936_PI429285431	4.8247538	P	5.142776	P	0.802168822590034	0	lncRNA	51827-1_{1..596}	"gi|410172335|ref|XR_171720.1| PREDICTED: Homo sapiens family with sequence similarity 66, member D (FAM66D), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172335|ref|XR_171720.1| PREDICTED: Homo sapiens family with sequence similarity 66, member D (FAM66D), misc_RNA"	NA	NA	NA	NA	NA	XR_171720.1	NA	NA	NA	NA	NA	Unknown
CUST_24976_PI429285431	7.3061533	P	7.4151907	P	0.927206509496289	0	lncRNA	26516-1_{1..796}	lnc-CDK2AP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CDK2AP1-1:2	chr12	123745373	123746168	-	lnc-CDK2AP1-1	lnc-CDK2AP1-1:2	ENSG00000235423.3	RP11-282O18.3	C12orf65	NA	chr12:123735373-123742506	inter
LNCA_21_P0005578	0.8884125	A	2.2103686	A	0.399992235409416	0	lncRNA	TCONS_00014218	NA	NA	NA	NA	XLOC_006259	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006259), lincRNA [TCONS_00014218]"	chr7:133782932-133782991	hs|7q33	Agilent_HUMAN_G3V2	TCONS_00014218	TCONS_00014218	chr7	133782932	133782991	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014689	2.7130947	A	2.2201815	A	1.4072837033076	0	lncRNA	ENST00000423323	XR_111668	XR_111668	NA	NA	LOC100506974	NA	ENST00000423323	THC2623839	NA	"PREDICTED: Homo sapiens hypothetical LOC100506974 (LOC100506974), miscRNA [XR_111668]"	chr17:13680015-13679956	hs|17p12	Agilent_HUMAN_G3V2	ENST00000423323	ENST00000423323	chr17	 13679956	 13680015	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005916	7.1029344	P	7.194219	P	0.938686554646225	0	lncRNA	TCONS_00015185	NA	NA	NA	NA	XLOC_007243	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007243), lincRNA [TCONS_00015185]"	chr8:143276279-143276220	hs|8q24.3	Agilent_HUMAN_G3V2	TCONS_00015185	TCONS_00015185	chr8	143276220	143276279	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19242_PI429285431	0.88585246	A	0.88551366	A	1.00023486584144	0	lncRNA	20911-1_{1..374}	lnc-ZIC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZIC2-1:1	chr13	100427285	100427658	+	lnc-ZIC2-1	lnc-ZIC2-1:1	ENSG00000233731.1	CLYBL-IT1	CLYBL	NA	chr13:100417285-100437543	inner
CUST_11081_PI429285431	10.519243	P	10.035088	P	1.39876635506392	0	lncRNA	12633-1_{1..1315}	lnc-EBF3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EBF3-4:1	chr10	131178907	131180221	-	lnc-EBF3-4	lnc-EBF3-4:1	XLOC_008993	linc-MKI67-5	NA	NA	NA	inter
LNCA_21_P0009337	0.8881587	A	0.9151314	A	0.981477636098614	0	lncRNA	TCONS_00025701	NA	NA	NA	NA	XLOC_012529	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012529), lincRNA [TCONS_00025701]"	chr17:55123005-55122946	hs|17q22	Agilent_HUMAN_G3V2	TCONS_00025701	TCONS_00025701	chr17	 55122946	 55123005	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48439_PI429285431	10.843993	P	10.552602	P	1.22381967646872	0	lncRNA	52291-1_{1..1237}	hg19_lincRNAsTranscripts_TCONS_l2_00000663 range=chr1:160864697-160866290 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000663 range=chr1:160864697-160866290 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	160864697	160865933	+	NA	NA	NA	NA	ITLN1	NA	chr1:160854697-160854960	inter
CUST_19796_PI429285431	4.784611	P	2.2974522	A	5.60672690472631	0	lncRNA	21453-2_{3001..4961}	lnc-CPVL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPVL-2:1	chr7	 28995974	 28997934	-	lnc-CPVL-2	lnc-CPVL-2:1	ENSG00000176734.3	TRIL	TRIL	NA	chr7:28992974-28998029	inner
CUST_37846_PI429285431	1.1027932	A	0.89817667	A	1.15238000215825	0	lncRNA	38937-1_{1..969}	n346373|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1923|NULL|-1.3101900|-0.1886010	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346373|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1923|NULL|-1.3101900|-0.1886010	chr16	  3313787	  3314755	+	NA	NA	NA	NA	MEFV	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30chr16:3303787-3306627"	NA	inter
CUST_30968_PI429285431	1.5066135	A	3.467399	P	0.256888551213359	0	lncRNA	32756-1_{1..273}	n337099|DQ459608|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343439|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343439|0.8545510|-0.3100911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337099|DQ459608|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343439|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343439|0.8545510|-0.3100911	chr4	 89052996	 89053268	-	NA	NA	NA	NA	ABCG2	NA	chr4:89042996-89071086	inner
CUST_47198_PI429285431	5.1654096	P	5.0149455	P	1.10992646645231	0	lncRNA	51272-1_{1..1428}	"gi|302488607|ref|NR_036522.1| Homo sapiens uncharacterized LOC100128252 (LOC100128252), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|302488607|ref|NR_036522.1| Homo sapiens uncharacterized LOC100128252 (LOC100128252), transcript variant 2, non-coding RNA"	Chr19	 56989493	 56990920	+	100128252	NR_036522.1	NA	NA	NA	NA	NA	inter
CUST_16716_PI429285431	3.7069354	P	4.1838307	P	0.718522231341611	0	lncRNA	18423-1_{1..790}	lnc-GTF2F2-2:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GTF2F2-2:17	chr13	 45957895	 45958684	+	lnc-GTF2F2-2	lnc-GTF2F2-2:17	XLOC_010376	linc-COG3-1	SLC25A30	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20chr13:45967451-45967973"	NA	inter
CUST_44562_PI429285431	1.3027987	A	0.89303946	A	1.32846409869811	0	lncRNA	49144-2_{3001..5953}	"gi|380862374|ref|NR_046462.1| Homo sapiens family with sequence similarity 169, member A (FAM169A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|380862374|ref|NR_046462.1| Homo sapiens family with sequence similarity 169, member A (FAM169A), transcript variant 2, non-coding RNA"	Chr5	 74076399	 74079351	-	26049	NR_046462.1	NA	NA	NA	NA	NA	inter
CUST_40066_PI429285431	5.5432625	P	5.9083734	P	0.776409190115303	0	lncRNA	40918-1_{1..780}	n407303|NR_026770|lncRNA|Homosapiens||RefGeneNoncode|NR_026770||3.4730300|-0.0968774	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407303|NR_026770|lncRNA|Homosapiens||RefGeneNoncode|NR_026770||3.4730300|-0.0968774	chr17	 41994575	 41995354	+	NA	NA	NA	NA	MPP2	NA	chr17:41984575-41985113	inter
CUST_16355_PI429285431	1.3346626	A	0.91496176	A	1.33765014833495	0	lncRNA	18055-1_{1..543}	lnc-PSCA-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PSCA-2:1	chr8	143721816	143722358	+	lnc-PSCA-2	lnc-PSCA-2:1	XLOC_006951	linc-PSCA	NA	NA	NA	inter
CUST_22492_PI429285431	4.065541	P	4.9367476	P	0.54668943490917	0	lncRNA	24079-1_{1..494}	lnc-SHISA4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHISA4-1:1	chr1	201868858	201869351	+	lnc-SHISA4-1	lnc-SHISA4-1:1	ENSG00000223774.1	RP11-307B6.3	LMOD1	"hg19_refFlat_LMOD1:range=chr1:201867500-2019154685'pad=0,hg19_refFlat_LMOD1:range=chr1:201867500-2019154685'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20chr1:201865584-201879106"	NA	inner
LNCA_21_P0014879	4.3204627	P	4.4535275	P	0.911892206106757	0	lncRNA	ENST00000449197	XR_132790	XR_132790	NA	NA	LOC100652735	NA	ENST00000449197	THC2538570	NA	"PREDICTED: Homo sapiens hypothetical LOC100652735 (LOC100652735), miscRNA [XR_132790]"	chr10:97782370-97782311	hs|10q24.1	Agilent_HUMAN_G3V2	ENST00000449197	ENST00000449197	chr10	 97782311	 97782370	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3336_PI429285431	4.0523677	P	4.5195856	P	0.723358181000508	0	lncRNA	3315-1_{1..432}	"transcript_id ""ENST00000521034.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521034.1"" | genecode_v17"	chr8	137809516	137809947	+	ENSG00000254101.1	ENST00000521034.1	RP11-30J20.1	RP11-30J20.1-006	NA	NA	NA	inter
CUST_6298_PI429285431	5.9769087	P	6.4507284	P	0.720055642182685	0	lncRNA	6222-1_{1..415}	"transcript_id ""ENST00000592934.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592934.1"" | genecode_v17"	chr19	  1748159	  1748573	+	ENSG00000267073.1	ENST00000592934.1	AC005256.1	AC005256.1-002	ONECUT3	NA	chr19:1753662-1758744	inter
CUST_13339_PI429285431	1.1302614	A	0.99634725	A	1.09726664093561	0	lncRNA	14976-1_{1..2037}	lnc-SNAP47-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNAP47-1:1	chr1	227978126	227980162	+	lnc-SNAP47-1	lnc-SNAP47-1:1	XLOC_000595	linc-PRSS38	SNAP47	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10chr1:227968126-227968932"	NA	inter
CUST_46117_PI429285431	0.9107756	A	0.909057	A	1.00119195255597	0	lncRNA	50377-1_{1..400}	"gi|310122957|ref|XR_110330.1| PREDICTED: Homo sapiens uncharacterized LOC100505645 (LOC100505645), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310122957|ref|XR_110330.1| PREDICTED: Homo sapiens uncharacterized LOC100505645 (LOC100505645), misc_RNA"	Chr12	 96196875	 96197274	+	100505645	XR_110330.1	NA	NA	NA	NA	NA	inter
CUST_20369_PI429285431	4.4142737	P	4.5783696	P	0.892487643335482	0	lncRNA	22010-1_{1..639}	lnc-ITGB8-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-ITGB8-3:1	chr7	 20192887	 20193525	+	lnc-ITGB8-3	lnc-ITGB8-3:1	ENSG00000228598.1	MACC1-AS1	MACC1	NA	chr7:20182887-20203154	inter
LNCA_21_P0003741	6.3615327	P	6.5961194	P	0.849928449838122	0	lncRNA	TCONS_00008475	NA	NA	NA	NA	XLOC_003937	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003937), lincRNA [TCONS_00008475]"	chr4:41874911-41874852	hs|4p13	Agilent_HUMAN_G3V2	TCONS_00008475	TCONS_00008475	chr4	 41874852	 41874911	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009252	6.4978023	P	6.521201	P	0.983912072700873	0	lncRNA	TCONS_00025419	NA	NA	NA	NA	XLOC_012229	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012229), lincRNA [TCONS_00025419]"	chr17:47313632-47313691	hs|17q21.32	Agilent_HUMAN_G3V2	TCONS_00025419	TCONS_00025419	chr17	 47313632	 47313691	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5944_PI429285431	0.89901936	A	0.9042681	A	0.996368460714249	0	lncRNA	5873-1_{1..518}	"transcript_id ""ENST00000591379.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591379.1"" | genecode_v17"	chr17	 66789690	 66790207	-	ENSG00000267250.1	ENST00000591379.1	RP11-118B18.2	RP11-118B18.2-001	NA	NA	NA	inter
CUST_44925_PI429285431	8.3872795	P	8.799352	P	0.751542970666688	0	lncRNA	49440-1_{1..3000}	"gi|338827734|ref|NR_040085.1| Homo sapiens uncharacterized LOC100506776 (LOC100506776), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338827734|ref|NR_040085.1| Homo sapiens uncharacterized LOC100506776 (LOC100506776), non-coding RNA"	Chr7	 38381178	 38384177	+	100506776	NR_040085.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.54;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80"	NA	inter
CUST_45476_PI429285431	5.935935	P	6.5346417	P	0.660345655178719	0	lncRNA	49891-1_{1..2853}	"gi|254750680|ref|NR_027152.2| Homo sapiens chromosome 10 open reading frame 108 (C10orf108), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254750680|ref|NR_027152.2| Homo sapiens chromosome 10 open reading frame 108 (C10orf108), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NR_027152.2	NA	NA	NA	NA	NA	Unknown
CUST_43530_PI429285431	0.90005684	A	0.90627736	A	0.995697546288045	0	lncRNA	48314-1_{1..1791}	"gi|291621710|ref|NR_033424.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 5 (DNAJA1P5), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|291621710|ref|NR_033424.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 5 (DNAJA1P5), non-coding RNA"	NA	NA	NA	NA	NA	NR_033424.1	NA	NA	NA	NA	NA	Unknown
CUST_49309_PI429285431	0.9027814	A	0.90949917	A	0.995354420903668	0	lncRNA	53126-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00023709 range=chr5:34164803-34189619 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023709 range=chr5:34164803-34189619 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 34164803	 34167802	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007869	4.1134076	P	4.747162	P	0.644497023109993	0	lncRNA	TCONS_00021289	NA	NA	NA	NA	XLOC_010016	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010016), lincRNA [TCONS_00021289]"	chr12:10433127-10433068	hs|12p13.2	Agilent_HUMAN_G3V2	TCONS_00021289	TCONS_00021289	chr12	 10433068	 10433127	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30040_PI429285431	6.2556896	P	5.8011384	P	1.37035644207927	0	lncRNA	31809-1_{1..351}	n334531|U38658|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219599|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219599|2.2564000|-0.1659729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334531|U38658|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219599|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219599|2.2564000|-0.1659729	chr17	 27013736	 27014086	+	NA	NA	NA	NA	SUPT6H	NA	chr17:27003736-27024465	inner
LNCA_21_P0014197	0.8981815	A	0.89560413	A	1.00178809348479	0	lncRNA	XR_108803	XR_108803	XR_108803	NA	NA	LOC100506586	uncharacterized LOC100506586	ENST00000450480	THC2656222	NA	"PREDICTED: Homo sapiens hypothetical LOC100506586 (LOC100506586), miscRNA [XR_108803]"	chr7:120386882-120386823	hs|7q31.31	Agilent_HUMAN_G3V2	XR_108803	XR_108803	chr7	120386823	120386882	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45253_PI429285431	0.8948319	A	0.8897455	A	1.00353184614123	0	lncRNA	49706-1_{1..1048}	"gi|397139293|ref|XR_158840.1| PREDICTED: Homo sapiens LP2209 (LOC100130232), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139293|ref|XR_158840.1| PREDICTED: Homo sapiens LP2209 (LOC100130232), misc_RNA"	NA	NA	NA	NA	NA	XR_158840.1	NA	NA	NA	NA	NA	Unknown
CUST_22079_PI429285431	0.9025738	A	0.88403416	A	1.01293362426381	0	lncRNA	23685-1_{1..657}	lnc-H2AFJ-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-H2AFJ-2:1	chr12	 14910529	 14911185	+	lnc-H2AFJ-2	lnc-H2AFJ-2:1	ENSG00000214772.2	RP11-174G6.1	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80"	NA	inter
CUST_27758_PI429285431	3.0937104	P	3.495669	P	0.756830114392099	0	lncRNA	29339-1_{1..456}	n324974|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079612|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079612|-1.2666400|-0.2606730	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324974|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079612|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079612|-1.2666400|-0.2606730	chr20	 46020172	 46020627	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43564_PI429285431	1.0313973	A	0.9092224	A	1.08837437886843	0	lncRNA	48338-1_{1..2446}	"gi|359718948|ref|NR_045604.1| Homo sapiens V-set domain containing T cell activation inhibitor 1 (VTCN1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|359718948|ref|NR_045604.1| Homo sapiens V-set domain containing T cell activation inhibitor 1 (VTCN1), transcript variant 5, non-coding RNA"	Chr1	117686209	117688654	-	79679	NR_045604.1	NA	NA	NA	NA	NA	inter
CUST_34260_PI429285431	1.8145119	A	1.6378284	A	1.13028257730794	0	lncRNA	35761-1_{1..2008}	n341118|BC022056|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3584|NULL|-0.0891011|-0.3644009	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n341118|BC022056|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3584|NULL|-0.0891011|-0.3644009	chr11	111255461	111257468	-	NA	NA	NA	NA	POU2AF1	NA	chr11:111245461-111250157	inter
CUST_45979_PI429285431	7.0994673	P	8.037247	P	0.522035672641202	0	lncRNA	50269-2_{3001..3514}	"gi|211938459|ref|NR_024374.1| Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like (LOC642846), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|211938459|ref|NR_024374.1| Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like (LOC642846), non-coding RNA"	Chr12	  9439253	  9439766	+	642846	NR_024374.1	NA	NA	NA	NA	NA	inter
CUST_47225_PI429285431	0.9031953	A	0.90686285	A	0.9974610765898	0	lncRNA	51300-1_{1..1061}	"gi|338797780|ref|NR_040043.1| Homo sapiens ISM1 antisense RNA 1 (ISM1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338797780|ref|NR_040043.1| Homo sapiens ISM1 antisense RNA 1 (ISM1-AS1), non-coding RNA"	Chr20	 13218067	 13219127	-	100505536	NR_040043.1	NA	NA	NA	NA	NA	inter
CUST_43032_PI429285431	2.9457583	A	2.1256053	A	1.76559322649586	0	lncRNA	46560-1_{1..110}	ENST00000516196 ncrna:snRNA chromosome:GRCh37:1:74349396:74349505:1 gene:ENSG00000252005 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516196 ncrna:snRNA chromosome:GRCh37:1:74349396:74349505:1 gene:ENSG00000252005 gene_biotype:snRNA transcript_biotype:snRNA	chr1	 74349396	 74349505	+	ENSG00000252005	ENST00000516196	NA	NA	NA	NA	NA	inter
CUST_48050_PI429285431	5.0809956	P	3.9147694	P	2.24423880743805	0	lncRNA	51929-1_{1..3000}	"gi|410169993|ref|XR_172440.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410169993|ref|XR_172440.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	XR_172440.1	NA	NA	NA	NA	NA	Unknown
CUST_13053_PI429285431	1.2341131	A	0.90081733	A	1.25988824586012	0	lncRNA	14678-1_{1..458}	lnc-DHX37-10:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-10:16	chr12	127221330	127221787	-	lnc-DHX37-10	lnc-DHX37-10:16	XLOC_010244	linc-DHX37-4	NA	NA	NA	inter
CUST_17508_PI429285431	6.5837193	P	6.3866816	P	1.14634214114711	0	lncRNA	19233-1_{1..550}	lnc-WRNIP1-2:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRNIP1-2:13	chr6	  2306434	  2306983	+	lnc-WRNIP1-2	lnc-WRNIP1-2:13	XLOC_005126	linc-WRNIP1-3	NA	NA	NA	inter
LNCA_21_P0011017	8.265458	P	7.73732	P	1.44206680476967	0	lncRNA	TCONS_l2_00005184	NA	NA	NA	NA	XLOC_l2_002767	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002767), lincRNA [TCONS_l2_00005184]"	NA	NA	Agilent_HUMAN_G3V2	TCONS_l2_00005184	TCONS_l2_00005184	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25663_PI429285431	0.90672475	A	1.9438884	A	0.48728453790245	0	lncRNA	27192-1_{1..446}	lnc-SLC35G1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC35G1-1:1	chr10	 95880474	 95880919	+	lnc-SLC35G1-1	lnc-SLC35G1-1:1	ENSG00000231575.1	RP11-162K11.4	PLCE1	NA	chr10:95870474-95890864	inner
CUST_38786_PI429285431	2.2309208	A	2.4691374	A	0.847792671149144	0	lncRNA	39780-1_{1..3000}	n384454|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hay.2||-1.1487400|-0.3979733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384454|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hay.2||-1.1487400|-0.3979733	chr4	 56294073	 56297072	-	NA	NA	NA	NA	CLOCK	NA	chr4:56298660-56307591	inner
CUST_23799_PI429285431	2.3236613	A	1.7788996	A	1.45877936757843	0	lncRNA	25364-2_{3001..3501}	lnc-CAPN3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CAPN3-1:2	chr15	 42706945	 42707445	+	lnc-CAPN3-1	lnc-CAPN3-1:2	ENSG00000258461.1	RP11-164J13.1	ZFP106	NA	chr15:42705021-42714515	inner
CUST_32263_PI429285431	6.6772356	P	6.3131533	P	1.28706266700068	0	lncRNA	33952-1_{1..2164}	n338841|BC032061|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1264|NULL|8.3766300|-0.2052218	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338841|BC032061|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1264|NULL|8.3766300|-0.2052218	chr2	 54684397	 54686560	+	NA	NA	NA	NA	SPTBN1	NA	chr2:54683454-54866341	inner
CUST_35902_PI429285431	0.9030143	A	0.8996488	A	1.00233550990042	0	lncRNA	37279-1_{1..3000}	n344554|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_102|NULL|-1.4895300|-0.3671434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344554|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_102|NULL|-1.4895300|-0.3671434	chr4	124560705	124563704	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4304_PI429285431	0.89211434	A	1.7038122	A	0.569710989260217	0	lncRNA	4259-1_{1..409}	"transcript_id ""ENST00000502700.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502700.2"" | genecode_v17"	chr12	 67480558	 67480966	-	ENSG00000257083.1	ENST00000502700.2	RP11-123O10.3	RP11-123O10.3-003	NA	NA	NA	inter
CUST_19716_PI429285431	0.92190117	A	0.9517805	A	0.979502221754395	0	lncRNA	21373-1_{1..804}	lnc-TBL1XR1-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBL1XR1-8:1	chr3	175494054	175494857	-	lnc-TBL1XR1-8	lnc-TBL1XR1-8:1	ENSG00000225552.1	NAALADL2-AS1	NAALADL2	NA	chr3:175484054-175504121	inner
CUST_7513_PI429285431	0.8972491	A	0.9063511	A	0.993710834476851	0	lncRNA	9153-1_{1..2191}	lnc-CALCOCO2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALCOCO2-6:1	chr17	 46699848	 46702038	+	lnc-CALCOCO2-6	lnc-CALCOCO2-6:1	ENSG00000248304	AC103702.1	HOXB9	NA	chr17:46698518-46703835	inner
LNCA_21_P0014060	3.1660845	P	2.0509295	A	2.16618280849377	0	lncRNA	ENST00000488806	XR_108307	XR_108307	NA	Hs.728951	PIGC	"phosphatidylinositol glycan anchor biosynthesis, class C"	ENST00000488806	THC2603580	GO:0006501|GO:0005783|GO:0016757|GO:0016254|GO:0003824|GO:0000506|GO:0017176|GO:0016020|GO:0005789|GO:0016021|GO:0044267|GO:0006506|GO:0043687	"PREDICTED: Homo sapiens hypothetical LOC100505991, transcript variant 2 (LOC100505991), miscRNA [XR_108307]"	chr1:172362943-172362884	hs|1q24.3	Agilent_HUMAN_G3V2	ENST00000488806	ENST00000488806	chr1	172362884	172362943	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1271_PI429285431	1.4903752	A	1.2068027	A	1.21720528243873	0	lncRNA	1263-1_{1..541}	"transcript_id ""ENST00000409910.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000409910.1"" | genecode_v17"	chr2	238337563	238338103	-	ENSG00000222032.1	ENST00000409910.1	AC112721.2	AC112721.2-001	NA	NA	NA	inter
CUST_30519_PI429285431	5.4172807	P	3.9344022	P	2.79505854127568	0	lncRNA	32299-1_{1..562}	n335676|CR615359|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000294554|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000294554|-1.1804900|-0.3436612	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335676|CR615359|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000294554|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000294554|-1.1804900|-0.3436612	chr4	 39826417	 39826978	-	NA	NA	NA	NA	PDS5A	NA	chr4:39824483-39836979	inner
LNCA_21_P0003272	0.9100802	A	0.9224144	A	0.991487026374627	0	lncRNA	ENST00000457815	NA	NA	NA	NA	XLOC_002975	NA	ENST00000457815	NA	NA	"BROAD Institute lincRNA (XLOC_002975), lincRNA [TCONS_00007062]"	chr3:193826695-193826754	hs|3q29	Agilent_HUMAN_G3V2	ENST00000457815	ENST00000457815	chr3	193826695	193826754	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32832_PI429285431	2.734304	A	3.574982	P	0.558381094054852	0	lncRNA	34466-1_{1..1199}	n339485|BC035772|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1925|NULL|-1.0245900|-0.3158097	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339485|BC035772|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1925|NULL|-1.0245900|-0.3158097	chr21	 38255541	 38256739	-	NA	NA	NA	NA	HLCS	NA	chr21:38245541-38266713	inner
CUST_46483_PI429285431	7.0320873	P	6.1570244	P	1.83408804899337	0	lncRNA	50679-1_{1..2638}	"gi|371933011|ref|NR_045106.2| Homo sapiens von Willebrand factor A domain containing 9 (VWA9), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371933011|ref|NR_045106.2| Homo sapiens von Willebrand factor A domain containing 9 (VWA9), transcript variant 2, non-coding RNA"	Chr15	 65871095	 65873732	-	81556	NR_045106.2	NA	NA	NA	NA	NA	inter
CUST_36541_PI429285431	0.9094944	A	0.9301575	A	0.985779510561267	0	lncRNA	37738-2_{3001..3606}	n345040|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_589|NULL|-1.5199600|-0.3595128	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345040|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_589|NULL|-1.5199600|-0.3595128	chr9	  2782833	  2783438	-	NA	NA	NA	NA	KIAA0020	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10chr9:2804152-2807685"	NA	inter
CUST_22914_PI429285431	3.654908	P	3.8999584	P	0.843786318262504	0	lncRNA	24491-1_{1..629}	lnc-OR1F1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR1F1-1:1	chr16	  3274569	  3275197	+	lnc-OR1F1-1	lnc-OR1F1-1:1	ENSG00000262668.1	AJ003147.9	ZNF200	"hg19_refFlat_ZNF200:range=chr16:3273892-32837555'pad=0,hg19_refFlat_ZNF200:range=chr16:3273892-32837555'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60chr16:3272325-3284779"	NA	inner
CUST_12955_PI429285431	0.8968199	A	0.9501186	A	0.963730253419774	0	lncRNA	14583-1_{1..540}	lnc-RP11-428C6.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-428C6.1.1-2:1	chr5	 73407907	 73408446	+	lnc-RP11-428C6.1.1-2	lnc-RP11-428C6.1.1-2:1	XLOC_004428	linc-HEXB-2	NA	NA	NA	inter
CUST_39027_PI429285431	1.4908938	A	1.459627	A	1.02190904858554	0	lncRNA	40007-1_{1..1868}	n385385|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xna.2||3.1753800|-0.2714885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385385|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xna.2||3.1753800|-0.2714885	chr8	 39172181	 39174048	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8666_PI429285431	0.9043752	A	0.9188154	A	0.990040741255697	0	lncRNA	10217-1_{1..507}	lnc-SOX2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOX2-1:2	chr3	180893302	180893808	+	lnc-SOX2-1	lnc-SOX2-1:2	ENSG00000242808	RP11-4B14.2	NA	NA	NA	inter
CUST_45280_PI429285431	0.90087193	A	1.4346204	A	0.690757645311611	0	lncRNA	49728-1_{1..1191}	"gi|289547758|ref|NR_033343.1| Homo sapiens prostate stem cell antigen (PSCA), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|289547758|ref|NR_033343.1| Homo sapiens prostate stem cell antigen (PSCA), transcript variant 2, non-coding RNA"	NW_003871066.2	    40441	    41631	+	8000	NR_033343.1	NA	NA	NA	NA	NA	Unknown
CUST_222_PI429201921	0.90191615	A	0.9160283	A	0.990265889179861	0	lncRNA	174-2_{3001..5798}	TC09002089.hg.1	 TCONS_l2_00028914-XLOC_l2_014913 // Broad TUCP // linc-CENPP-5 chr9:+:94897998-94900914 // chr9 // 100 // 100 // 0 // --- // 0///TCONS_l2_00029800-XLOC_l2_014913 // Broad TUCP // linc-CENPP-5 chr9:+:94895115-94900911 // chr9 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr9:+:94895115-94900911	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00029800-XLOC_l2_014913	linc-CENPP-5	chr9	 94895115	 94900911	+	NA	NA	NA	NA	ID3	NA	chr1:23884409-23886322	Unknown
CUST_33528_PI429285431	0.91522914	A	0.9253323	A	0.993021486834207	0	lncRNA	35096-1_{1..2706}	n340268|AK129829|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2729|NULL|-1.0995900|-0.3407571	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340268|AK129829|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2729|NULL|-1.0995900|-0.3407571	chr4	169503037	169505742	+	NA	NA	NA	NA	PALLD	NA	chr4:169493037-169515743	inner
CUST_20962_PI429285431	1.3830303	A	1.0922936	A	1.22326476802334	0	lncRNA	22593-1_{1..805}	lnc-SRSF6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRSF6-1:1	chr20	 41829236	 41830040	+	lnc-SRSF6-1	lnc-SRSF6-1:1	ENSG00000233508.1	RP1-269M15.3	NA	NA	NA	inter
CUST_985_PI429285431	0.8969374	A	1.0543282	A	0.896645241779464	0	lncRNA	974-1_{1..546}	"transcript_id ""ENST00000544869.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544869.1"" | genecode_v17"	chr2	104490789	104491334	+	ENSG00000256637.1	ENST00000544869.1	RP11-76I14.1	RP11-76I14.1-004	NA	NA	NA	inter
LNCA_21_P0014056	0.90129817	A	0.90810955	A	0.995289838922094	0	lncRNA	ENST00000481831	XR_108293	XR_108293	NA	Hs.635593	DCAF8	DDB1 and CUL4 associated factor 8	ENST00000481831	THC2679355	GO:0005515|GO:0016567|GO:0080008	"PREDICTED: Homo sapiens hypothetical LOC100505686 (LOC100505686), miscRNA [XR_108293]"	chr1:160189762-160189703	hs|1q23.2	Agilent_HUMAN_G3V2	ENST00000481831	ENST00000481831	chr1	160189703	160189762	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3289745	4.5579658	P	5.1019025	P	0.685896738188893	0	lncRNA	XR_111182	XR_111182	XR_111182	   399900	Hs.528437	LOC399900	uncharacterized LOC399900	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC399900 (LOC399900), miscRNA [XR_111182]"	chr11:61736625-61736684	hs|11q12.3	Agilent_HUMAN_G3V2	XR_111182	XR_111182	chr11	 61736625	 61736684	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12927_PI429285431	7.3664875	P	7.9255037	P	0.678764868057146	0	lncRNA	14555-1_{1..2912}	lnc-F13A1-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-F13A1-3:7	chr6	  6700449	  6703360	-	lnc-F13A1-3	lnc-F13A1-3:7	XLOC_005595	linc-F13A1-1	NA	NA	NA	inter
CUST_6339_PI429285431	6.0200033	P	6.849601	P	0.562686127246419	0	lncRNA	6263-1_{1..388}	"transcript_id ""ENST00000590065.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590065.1"" | genecode_v17"	chr19	 12895353	 12895740	-	ENSG00000267212.1	ENST00000590065.1	CTD-2659N19.9	CTD-2659N19.9-001	HOOK2	NA	chr19:12885353-12886434	inter
CUST_32996_PI429285431	0.88670015	A	0.8914108	A	0.996740151116624	0	lncRNA	34611-1_{1..1277}	n339678|AL137571|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2122|NULL|-1.0170900|-0.4896082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339678|AL137571|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2122|NULL|-1.0170900|-0.4896082	chr3	169512749	169514025	+	NA	NA	NA	NA	LRRC34	"hg19_refFlat_LRRC34:range=chr3:169511423-1695303365'pad=0,hg19_refFlat_LRRC34:range=chr3:169511423-1695303365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80chr3:169511216-169524001"	NA	inner
CUST_39425_PI429285431	0.8894274	A	0.89546996	A	0.99582037561749	0	lncRNA	40381-5_{12001..15000}	n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	chr13	 19420542	 19423541	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_39134_PI429285431	3.953054	P	4.371449	P	0.748256597827433	0	lncRNA	40110-1_{1..1736}	n385735|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004cql.2||1.2186100|-0.2372969	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385735|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004cql.2||1.2186100|-0.2372969	chrX	  2582344	  2584079	+	NA	NA	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60"	NA	inter
CUST_17429_PI429285431	4.457026	P	4.3781834	P	1.05617038943332	0	lncRNA	19153-1_{1..910}	lnc-SLITRK6-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK6-9:1	chr13	 88323091	 88324000	-	lnc-SLITRK6-9	lnc-SLITRK6-9:1	XLOC_010683	linc-SLITRK6-6	SLITRK5	NA	chr13:88324870-88331871	inter
CUST_15766_PI429285431	0.9036044	A	1.1065189	A	0.868793671886047	0	lncRNA	17454-1_{1..666}	lnc-SLCO1A2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLCO1A2-4:2	chr12	 20262708	 20263373	-	lnc-SLCO1A2-4	lnc-SLCO1A2-4:2	XLOC_010026	linc-PLCZ1-3	NA	NA	NA	inter
CUST_10976_PI429285431	7.2110643	P	7.6167083	P	0.754899240514742	0	lncRNA	12519-1_{1..1397}	lnc-BCL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BCL3-1:1	chr19	 45249841	 45251237	+	lnc-BCL3-1	lnc-BCL3-1:1	XLOC_013095	linc-BCL3	BCL3	NA	chr19:45251978-45260906	inter
CUST_25141_PI429285431	4.343586	P	4.816388	P	0.72056376006738	0	lncRNA	26679-1_{1..424}	lnc-NMNAT1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NMNAT1-3:1	chr1	  9910044	  9910467	+	lnc-NMNAT1-3	lnc-NMNAT1-3:1	ENSG00000223989.1	RP11-84A14.5	CTNNBIP1	NA	chr1:9908334-9920212	inner
CUST_8157_PI429285431	5.9360185	P	5.935439	P	1.00040175947486	0	lncRNA	9760-1_{1..567}	lnc-CRYBA4-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:10	chr22	 27061495	 27062061	+	lnc-CRYBA4-1	lnc-CRYBA4-1:10	ENSG00000225783	XLOC_014192	NA	NA	NA	inter
CUST_43755_PI429285431	2.5686052	A	3.3134801	P	0.596719612448601	0	lncRNA	48493-1_{1..1733}	"gi|238859619|ref|NR_027762.1| Homo sapiens RNA binding motif protein 34 (RBM34), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|238859619|ref|NR_027762.1| Homo sapiens RNA binding motif protein 34 (RBM34), transcript variant 3, non-coding RNA"	Chr1	235294498	235296230	-	23029	NR_027762.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.81;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50"	NA	inter
CUST_51354_PI429285431	0.88789934	A	0.93058676	A	0.97084479404762	0	lncRNA	54950-1_{1..594}	hg19_lincRNAsTranscripts_TCONS_l2_00008781 range=chr15:82384074-82388213 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008781 range=chr15:82384074-82388213 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 82384074	 82384667	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7168_PI429285431	0.9129886	A	0.918823	A	0.995964068441477	0	lncRNA	7296-1_{1..231}	"transcript_id ""ENST00000516681.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516681.1"" | genecode_v17"	chr2	 43999259	 43999489	-	ENSG00000252490.1	ENST00000516681.1	RN7SKP66	RN7SKP66-201	PLEKHH2	NA	chr2:43989259-43995126	inter
CUST_28223_PI429285431	1.4580735	A	2.7785232	A	0.400410108191494	0	lncRNA	29856-1_{1..3000}	n325510|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322421|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322421|1.0891500|-0.3189070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325510|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322421|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322421|1.0891500|-0.3189070	chr2	   187568	   190567	+	NA	NA	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40"	NA	inter
LNCA_21_P0014259	4.200528	P	4.904315	P	0.613958480311013	0	lncRNA	XR_109036	XR_109036	XR_109036	NA	NA	LOC100506167	uncharacterized LOC100506167	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506167, transcript variant 3 (LOC100506167), miscRNA [XR_109036]"	chr10:135094868-135094927	hs|10q26.3	Agilent_HUMAN_G3V2	XR_109036	XR_109036	chr10	135094868	135094927	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45626_PI429285431	6.8661656	P	8.008734	P	0.452952477557194	0	lncRNA	50009-1_{1..2478}	"gi|212286167|ref|NR_024421.1| Homo sapiens ZNF503 antisense RNA 2 (ZNF503-AS2), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|212286167|ref|NR_024421.1| Homo sapiens ZNF503 antisense RNA 2 (ZNF503-AS2), transcript variant 1, non-coding RNA"	Chr10	 77161286	 77163763	+	100131213	NR_024421.1	NA	NA	NA	NA	NA	inter
CUST_48409_PI429285431	4.7114973	P	4.888977	P	0.884246372137422	0	lncRNA	52262-1_{1..285}	hg19_lincRNAsTranscripts_TCONS_l2_00000563 range=chr1:143398221-143401768 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000563 range=chr1:143398221-143401768 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	143398221	143398505	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21880_PI429285431	1.1141195	A	2.1665912	A	0.482141426750882	0	lncRNA	23489-1_{1..1203}	lnc-CCNE2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCNE2-1:1	chr8	 95804909	 95806111	-	lnc-CCNE2-1	lnc-CCNE2-1:1	ENSG00000254307.1	KB-1608C10.2	DPY19L4	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00chr8:95794909-95806076"	NA	inner
LNCA_21_P0003387	0.88795626	A	0.8867937	A	1.00080614995058	0	lncRNA	ENST00000510034	NA	NA	NA	NA	XLOC_003648	NA	ENST00000510034	NA	NA	"BROAD Institute lincRNA (XLOC_003648), lincRNA [TCONS_00007594]"	chr4:112569856-112569915	hs|4q25	Agilent_HUMAN_G3V2	ENST00000510034	ENST00000510034	chr4	112569856	112569915	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28622_PI429285431	2.0655003	A	1.1214004	A	1.92398813205119	0	lncRNA	30307-1_{1..465}	n325991|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047734|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047734|-1.1300000|-0.1561272	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325991|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047734|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047734|-1.1300000|-0.1561272	chr10	 43729352	 43729816	-	NA	NA	NA	NA	RASGEF1A	NA	chr10:43719352-43739960	inner
CUST_35604_PI429285431	4.9091134	P	5.4170046	P	0.703249633115248	0	lncRNA	37017-1_{1..2637}	n342741|U95031|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5244|NULL|8.3367000|-0.0243550	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342741|U95031|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5244|NULL|8.3367000|-0.0243550	chr11	  1272711	  1275347	+	NA	NA	NA	NA	MUC5B	NA	chr11:1262711-1283406	inner
CUST_25197_PI429285431	4.2955465	P	4.3691626	P	0.950253210856425	0	lncRNA	26728-1_{1..803}	lnc-RARS-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RARS-4:2	chr5	168453316	168454118	+	lnc-RARS-4	lnc-RARS-4:2	ENSG00000248222.1	CTB-174D11.1	SLIT3	NA	chr5:168443316-168463636	inner
CUST_11742_PI429285431	0.9070823	A	0.92133236	A	0.990171232278897	0	lncRNA	13322-1_{1..1529}	lnc-ACSL1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-ACSL1-2:2	chr4	185820461	185821989	-	lnc-ACSL1-2	lnc-ACSL1-2:2	XLOC_004209	linc-ACSL1-2	NA	NA	NA	inter
CUST_50311_PI429285431	0.9106664	A	0.91015726	A	1.0003529712352	0	lncRNA	54030-1_{1..400}	hg19_lincRNAsTranscripts_TCONS_l2_00029539 range=chr9:106077438-106087212 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029539 range=chr9:106077438-106087212 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	106077438	106077837	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20015_PI429285431	10.40061	P	9.92296	P	1.39247362348022	0	lncRNA	21668-1_{1..758}	lnc-NES-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NES-1:1	chr1	156631107	156631864	-	lnc-NES-1	lnc-NES-1:1	ENSG00000229953.1	RP11-284F21.7	BCAN	"hg19_refFlat_BCAN:range=chr1:156615847-1566289265'pad=0,hg19_refFlat_BCAN:range=chr1:156615847-1566289265'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.10;hg19_refFlat_BCAN:range=chr1:156615847-1566227585'pad=0,hg19_refFlat_BCAN:range=chr1:156615847-1566227585'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.10chr1:156621107-156629320"	NA	inter
LNCA_21_P0005642	2.207837	A	1.743768	A	1.37942689431393	0	lncRNA	TCONS_00014573	NA	NA	NA	NA	XLOC_006684	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006684), lincRNA [TCONS_00014573]"	chr8:1266419-1267646	hs|8p23.3	Agilent_HUMAN_G3V2	TCONS_00014573	TCONS_00014573	chr8	  1266419	  1267646	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14586_PI429285431	0.90207946	A	0.90511334	A	0.99789928423025	0	lncRNA	16253-1_{1..238}	lnc-IRS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRS1-1:1	chr2	227198195	227198432	-	lnc-IRS1-1	lnc-IRS1-1:1	XLOC_002505	linc-DOCK10-1	NA	NA	NA	inter
CUST_3911_PI429285431	4.3076577	P	5.0379376	P	0.60278695466015	0	lncRNA	3880-1_{1..376}	"transcript_id ""ENST00000532562.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532562.1"" | genecode_v17"	chr11	 37960151	 37960526	+	ENSG00000254516.1	ENST00000532562.1	RP11-159D8.1	RP11-159D8.1-001	NA	NA	NA	inter
CUST_34821_PI429285431	0.8937262	A	0.88267106	A	1.00769227380979	0	lncRNA	36253-1_{1..3000}	n341728|AK125873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4201|NULL|-0.9025690|-0.2932284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341728|AK125873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4201|NULL|-0.9025690|-0.2932284	chr9	 97792028	 97795027	-	NA	NA	NA	NA	C9orf3	NA	chr9:97782028-97805781	inner
CUST_51431_PI429285431	1.3208379	A	1.3445797	M	0.983678107736485	0	lncRNA	55009-1_{1..1115}	hg19_lincRNAsTranscripts_TCONS_l2_00010038 range=chr16:20602035-20607617 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010038 range=chr16:20602035-20607617 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 20602035	 20603149	-	NA	NA	NA	NA	ACSM1	NA	chr16:20599286-20617617	inter
LNCA_21_P0012931	2.4453125	A	2.896618	A	0.731380719358436	0	lncRNA	TCONS_l2_00023262	NA	NA	NA	NA	XLOC_l2_012323	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012323), lincRNA [TCONS_l2_00023262]"	chr5:175574184-175574125	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_l2_00023262	TCONS_l2_00023262	chr5	175574125	175574184	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42881_PI429285431	5.616766	P	5.7009873	P	0.943293544726101	0	lncRNA	45961-1_{1..85}	ENST00000386910 ncrna:snoRNA chromosome:GRCh37:19:10218327:10218411:1 gene:ENSG00000209645 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000386910 ncrna:snoRNA chromosome:GRCh37:19:10218327:10218411:1 gene:ENSG00000209645 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	 10218327	 10218411	+	ENSG00000209645	ENST00000386910	NA	NA	P2RY11	NA	chr19:10222197-10226065	inner
CUST_17977_PI429285431	0.89724547	A	0.90141886	A	0.997111406525813	0	lncRNA	19710-1_{1..3000}	lnc-TPM4-2:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPM4-2:15	chr19	 16138384	 16141383	+	lnc-TPM4-2	lnc-TPM4-2:15	XLOC_012983	linc-TPM4-2	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50"	NA	inter
CUST_25979_PI429285431	4.5828032	P	4.724272	P	0.906595685154718	0	lncRNA	27499-1_{1..767}	lnc-ZPBP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZPBP-1:1	chr7	 50182315	 50183081	-	lnc-ZPBP-1	lnc-ZPBP-1:1	ENSG00000228005.1	AC020743.2	C7orf72	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr7:50172315-50192419"	NA	inner
CUST_13636_PI429285431	5.0374627	P	5.2312856	P	0.874285937987591	0	lncRNA	15275-1_{1..1121}	lnc-ZNF572-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF572-1:4	chr8	125963058	125964178	+	lnc-ZNF572-1	lnc-ZNF572-1:4	XLOC_006916	linc-ZNF572	NA	NA	NA	inter
CUST_28305_PI429285431	1.5885341	A	1.7789938	A	0.876326444377073	0	lncRNA	29948-1_{1..610}	n325608|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000072585|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000072585|0.2226660|-0.1529557	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325608|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000072585|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000072585|0.2226660|-0.1529557	chr14	100485067	100485676	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.00"	NA	inter
CUST_27153_PI429285431	5.6368103	P	6.2265177	P	0.664477659329705	0	lncRNA	28689-1_{1..1904}	n324277|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322481|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322481|-0.3578940|-0.2671886	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324277|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322481|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322481|-0.3578940|-0.2671886	chr7	    93441	    95344	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.00"	NA	inter
LNCA_21_P0008016	0.8961364	A	0.89373934	A	1.0016628964621	0	lncRNA	ENST00000429011	NA	NA	NA	NA	XLOC_010696	NA	ENST00000429011	NA	NA	"BROAD Institute lincRNA (XLOC_010696), lincRNA [TCONS_00021689]"	chr13:95954839-95954780	hs|13q32.1	Agilent_HUMAN_G3V2	ENST00000429011	ENST00000429011	chr13	 95954780	 95954839	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010107	0.8957006	A	0.9860853	A	0.939272255376611	0	lncRNA	TCONS_00028609	NA	NA	NA	NA	XLOC_013643	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013643), lincRNA [TCONS_00028609]"	chr20:5489968-5489909	hs|20p12.3	Agilent_HUMAN_G3V2	TCONS_00028609	TCONS_00028609	chr20	  5489909	  5489968	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21607_PI429285431	3.5522788	P	3.9802945	P	0.743283403456206	0	lncRNA	23220-1_{1..2165}	lnc-RP11-849H4.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-849H4.2.1-1:1	chr11	 71524389	 71526553	-	lnc-RP11-849H4.2.1-1	lnc-RP11-849H4.2.1-1:1	ENSG00000248671.2	CTD-2313N18.5	LOC100131539	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr11:71514389-71532522"	NA	inter
CUST_33935_PI429285431	11.906141	P	12.555568	P	0.637533474677869	0	lncRNA	35476-1_{1..2213}	n340733|AK095669|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3196|NULL|1.6207500|-0.2756920	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340733|AK095669|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3196|NULL|1.6207500|-0.2756920	chr17	 46970128	 46972340	+	NA	NA	NA	NA	UBE2Z	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40chr17:46976493-46983230"	NA	inner
LNCA_21_P0001871	3.9345005	P	3.691724	P	1.1832676976204	0	lncRNA	ENST00000437790	NA	NA	NA	NA	XLOC_001507	NA	ENST00000437790	NA	NA	"BROAD Institute lincRNA (XLOC_001507), lincRNA [TCONS_00002917]"	chr2:66555378-66555437	hs|2p14	Agilent_HUMAN_G3V2	ENST00000437790	ENST00000437790	chr2	 66555378	 66555437	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43791_PI429285431	1.0704676	A	1.4811361	A	0.752274712233796	0	lncRNA	48522-1_{1..2000}	"gi|300796743|ref|NR_034135.1| Homo sapiens long intergenic non-protein coding RNA 299 (LINC00299), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300796743|ref|NR_034135.1| Homo sapiens long intergenic non-protein coding RNA 299 (LINC00299), non-coding RNA"	Chr2	  8147901	  8149900	-	339789	NR_034135.1	NA	NA	NA	NA	NA	inter
CUST_48738_PI429285431	1.7904938	A	2.209931	A	0.747716253959138	0	lncRNA	52577-1_{1..2755}	hg19_lincRNAsTranscripts_TCONS_l2_00013986 range=chr2:131452770-131462272 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013986 range=chr2:131452770-131462272 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	131452770	131455524	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13963_PI429285431	0.8923691	A	0.899711	A	0.994923909825451	0	lncRNA	15609-1_{1..899}	lnc-C7orf10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C7orf10-1:1	chr7	 41147457	 41148355	+	lnc-C7orf10-1	lnc-C7orf10-1:1	XLOC_006059	linc-MRPL32-4	NA	NA	NA	inter
CUST_8565_PI429285431	2.6779644	A	2.700087	A	0.984782752654583	0	lncRNA	10123-2_{3001..5468}	lnc-GPD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPD2-1:1	chr2	157201254	157203721	+	lnc-GPD2-1	lnc-GPD2-1:1	ENSG00000245949	AC074099.1	NR4A2	NA	chr2:157188254-157189287	inter
CUST_50745_PI429285431	1.1863592	A	1.5236901	A	0.79150430372197	0	lncRNA	54413-1_{1..1293}	hg19_lincRNAsTranscripts_TCONS_l2_00003329 range=chr10:133110511-133114038 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003329 range=chr10:133110511-133114038 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	133110511	133111803	+	NA	NA	NA	NA	TCERG1L	NA	chr10:133100511-133109984	inter
CUST_36002_PI429285431	0.92043704	A	1.0577633	A	0.909202615833904	0	lncRNA	37337-1_{1..2168}	n344613|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_161|NULL|-1.3647500|-0.2339041	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344613|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_161|NULL|-1.3647500|-0.2339041	chr14	101292452	101294619	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18931_PI429285431	0.9099802	A	0.91350806	A	0.997557661162201	0	lncRNA	20623-1_{1..575}	lnc-RNF144A-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RNF144A-2:4	chr2	  7562704	  7563278	+	lnc-RNF144A-2	lnc-RNF144A-2:4	ENSG00000229727	AC013460.1	NA	NA	NA	inter
CUST_32734_PI429285431	11.273249	P	11.248709	P	1.01715532275491	0	lncRNA	34374-1_{1..2758}	n339362|AK125500|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1794|NULL|-0.0204290|-0.2109042	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339362|AK125500|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1794|NULL|-0.0204290|-0.2109042	chr3	 50153454	 50156211	-	NA	NA	NA	NA	SEMA3F	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_RBM5:range=chr3:50127868-501558895'pad=0,hg19_refFlat_RBM5:range=chr3:50127868-501558895'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.60chr3:50192848-50203518"	NA	inner
CUST_18325_PI429285431	0.92688155	A	0.91498613	A	1.00827936274781	0	lncRNA	20054-1_{1..1808}	lnc-MMP23B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MMP23B-1:1	chr1	  1661685	  1663492	+	lnc-MMP23B-1	lnc-MMP23B-1:1	ENSG00000227775	RP1-283E3.3	NADK	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-58.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00chr1:1667250-1673343"	NA	inner
CUST_35360_PI429285431	10.5447445	P	10.452464	P	1.06605398643404	0	lncRNA	36770-1_{1..2713}	n342403|AK123720|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4895|NULL|4.5013200|-0.1963803	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342403|AK123720|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4895|NULL|4.5013200|-0.1963803	chr19	 46893714	 46896426	-	NA	NA	NA	NA	PPP5C	NA	chr19:46883714-46894232	inner
CUST_7056_PI429285431	0.9031582	A	0.9149878	A	0.991833871579796	0	lncRNA	7001-1_{1..270}	"transcript_id ""ENST00000422410.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422410.1"" | genecode_v17"	chrX	 48193110	 48193379	-	ENSG00000230100.1	ENST00000422410.1	RP11-344N17.8	RP11-344N17.8-001	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80"	NA	inter
CUST_38986_PI429285431	1.959387	A	1.8453615	A	1.08224377328927	0	lncRNA	39969-1_{1..3000}	n385228|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003uhk.1||5.4443800|-0.3857962	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n385228|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003uhk.1||5.4443800|-0.3857962	chr7	 81205702	 81208701	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17448_PI429285431	1.1193194	A	0.90119874	A	1.163217323322	0	lncRNA	19171-1_{1..661}	lnc-C10orf107-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf107-1:3	chr10	 63255508	 63256168	+	lnc-C10orf107-1	lnc-C10orf107-1:3	XLOC_008495	linc-C10orf107-1	NA	NA	NA	inter
CUST_18022_PI429285431	0.9194156	A	0.90319246	A	1.01130848668807	0	lncRNA	19756-1_{1..504}	lnc-ARHGEF5-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGEF5-1:4	chr7	144087664	144088167	+	lnc-ARHGEF5-1	lnc-ARHGEF5-1:4	XLOC_006281	linc-CNTNAP2-3	NOBOX	NA	chr7:144094333-144098102	inter
CUST_48774_PI429285431	0.8984145	A	0.90602803	A	0.994736603614384	0	lncRNA	52612-1_{1..928}	hg19_lincRNAsTranscripts_TCONS_l2_00015065 range=chr2:200732121-200775896 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015065 range=chr2:200732121-200775896 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	200732121	200733048	-	NA	NA	NA	NA	C2orf69	NA	chr2:200775979-200785896	inter
LNCA_21_P0002406	0.91020685	A	1.2713655	A	0.778539072124957	0	lncRNA	TCONS_00004153	NA	NA	NA	NA	XLOC_001996	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001996), lincRNA [TCONS_00004153]"	chr2:16061095-16061036	hs|2p24.3	Agilent_HUMAN_G3V2	TCONS_00004153	TCONS_00004153	chr2	 16061036	 16061095	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49429_PI429285431	4.251667	P	4.3374934	P	0.942244647712276	0	lncRNA	53232-1_{1..546}	hg19_lincRNAsTranscripts_TCONS_l2_00022662 range=chr5:177366635-177377722 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022662 range=chr5:177366635-177377722 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	177366635	177367180	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23572_PI429285431	4.5930815	P	5.006421	P	0.750883242229478	0	lncRNA	25140-1_{1..528}	lnc-SEC14L1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC14L1-1:3	chr17	 75095100	 75095627	+	lnc-SEC14L1-1	lnc-SEC14L1-1:3	ENSG00000234912.3	LINC00338	SEC14L1	NA	chr17:75085100-75105256	inner
CUST_5280_PI429285431	2.0773072	A	1.5416718	A	1.44958044649418	0	lncRNA	5220-1_{1..397}	"transcript_id ""ENST00000567981.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567981.1"" | genecode_v17"	chr15	 86626662	 86627058	-	ENSG00000260477.2	ENST00000567981.1	RP11-553E24.2	RP11-553E24.2-002	NA	NA	NA	inter
CUST_45347_PI429285431	1.8055016	A	1.3411964	A	1.37965275445523	0	lncRNA	49784-1_{1..1543}	"gi|223029459|ref|NR_026759.1| Homo sapiens family with sequence similarity 95, member B1 (FAM95B1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223029459|ref|NR_026759.1| Homo sapiens family with sequence similarity 95, member B1 (FAM95B1), non-coding RNA"	Chr9	 42468589	 42470131	+	100133036	NR_026759.1	NA	NA	NA	NA	NA	inter
CUST_7334_PI429285431	0.9060882	A	0.8987102	A	1.00512713892033	0	lncRNA	8807-1_{1..309}	"transcript_id ""ENST00000362849.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000362849.1"" | genecode_v17"	chr20	 18275787	 18276095	-	ENSG00000199719.1	ENST00000362849.1	RN7SKP74	RN7SKP74-201	ZNF133	NA	chr20:18269121-18286095	inner
CUST_51512_PI429285431	1.1135014	A	1.072041	A	1.02915508457138	0	lncRNA	55087-1_{1..284}	hg19_lincRNAsTranscripts_TCONS_l2_00009900 range=chr16:89314224-89314707 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009900 range=chr16:89314224-89314707 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 89314224	 89314507	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34411_PI429285431	5.899458	P	5.9178014	P	0.987365814005017	0	lncRNA	35892-1_{1..3000}	n341281|AL390145|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3750|NULL|-0.2895080|-0.3160324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341281|AL390145|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3750|NULL|-0.2895080|-0.3160324	chr7	 99517493	 99520492	+	NA	NA	NA	NA	TRIM4	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-24.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_GJC3:range=chr7:99521168-995272435'pad=0,hg19_refFlat_GJC3:range=chr7:99521168-995272435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10chr7:99507493-99517223"	NA	inner
CUST_29500_PI429285431	6.2008047	P	5.8831453	P	1.24630692401108	0	lncRNA	31258-1_{1..500}	n332931|AF086503|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067382|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067382|-1.2203100|-0.2022518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332931|AF086503|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067382|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067382|-1.2203100|-0.2022518	chr21	 46269503	 46270002	+	NA	NA	NA	NA	PTTG1IP	NA	chr21:46269500-46280003	inner
LNCA_21_P0002562	2.6047676	A	2.395709	A	1.15593365780558	0	lncRNA	TCONS_00004657	NA	NA	NA	NA	XLOC_001309	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001309), lincRNA [TCONS_00004657]"	chr2:666835-666894	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00004657	TCONS_00004657	chr2	   666835	   666894	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27835_PI429285431	5.555687	P	6.195903	P	0.641616878844843	0	lncRNA	29423-1_{1..1105}	n325065|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078015|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078015|-1.1462800|-0.2719699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325065|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078015|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078015|-1.1462800|-0.2719699	chr20	 11162817	 11163921	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38175_PI429285431	3.185058	P	2.8609214	A	1.25191498924218	0	lncRNA	39244-2_{3001..6000}	n381431|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jab.3||3.7206200|-0.2943468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381431|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jab.3||3.7206200|-0.2943468	chr10	 43011962	 43014961	-	NA	NA	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40"	NA	inter
CUST_36291_PI429285431	0.9248409	A	0.93888307	A	0.990313924617501	0	lncRNA	37522-2_{3001..5033}	n344817|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_366|NULL|-1.3159400|-0.2797017	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344817|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_366|NULL|-1.3159400|-0.2797017	chr1	 59264826	 59266858	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41215_PI429285431	8.631207	P	8.480011	P	1.11048969100938	0	lncRNA	42101-1_{1..63}	ENST00000585157 ncrna:miRNA chromosome:GRCh37:HSCHR6_MHC_SSTO:31658768:31658830:-1 gene:ENSG00000265412 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585157 ncrna:miRNA chromosome:GRCh37:HSCHR6_MHC_SSTO:31658768:31658830:-1 gene:ENSG00000265412 gene_biotype:miRNA transcript_biotype:miRNA	chrHSCHR6_MHC_SSTO	 31658768	 31658830	-	ENSG00000265412	ENST00000585157	NA	NA	NA	NA	NA	Unknown
CUST_24210_PI429285431	1.115356	A	0.8877687	A	1.17087519059399	0	lncRNA	25761-1_{1..508}	lnc-C1orf106-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf106-2:1	chr1	201011983	201012490	+	lnc-C1orf106-2	lnc-C1orf106-2:1	ENSG00000234132.1	RP11-168O16.2	CACNA1S	NA	chr1:201008640-201022201	inner
CUST_45656_PI429285431	5.460087	P	7.6932416	P	0.212693138840758	0	lncRNA	50033-1_{1..3000}	"gi|335353795|ref|NR_038382.1| Homo sapiens hCG2024094 (LOC643529), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|335353795|ref|NR_038382.1| Homo sapiens hCG2024094 (LOC643529), non-coding RNA"	Chr10	 91589250	 91592249	+	643529	NR_038382.1	NA	NA	NA	NA	NA	inter
CUST_29351_PI429285431	5.814948	P	4.2859354	P	2.88588257791449	0	lncRNA	31103-1_{1..231}	n332607|AL049247|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000023693|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000023693|-1.0333600|-0.1438157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332607|AL049247|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000023693|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000023693|-1.0333600|-0.1438157	chrX	148560281	148560511	-	NA	NA	NA	NA	IDS	NA	chrX:148560295-148570512	inner
CUST_5979_PI429285431	4.3566647	P	5.201952	P	0.556599956102194	0	lncRNA	5907-1_{1..550}	"transcript_id ""ENST00000582422.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582422.1"" | genecode_v17"	chr17	 75253819	 75254368	-	ENSG00000263718.2	ENST00000582422.1	RP11-285E9.6	RP11-285E9.6-004	NA	NA	NA	inter
CUST_10028_PI429285431	11.257095	P	11.714929	P	0.728078544168039	0	lncRNA	11554-1_{1..771}	lnc-PLCXD1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLCXD1-3:1	chrX	   398339	   399109	+	lnc-PLCXD1-3	lnc-PLCXD1-3:1	XLOC_007909	linc-SHOX-2	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.82;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.11;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40"	NA	inter
CUST_7741_PI429285431	12.113898	P	11.768925	P	1.27012721191877	0	lncRNA	9369-1_{1..918}	lnc-CRYBA4-1:31	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:31	chr22	 27130236	 27131153	+	lnc-CRYBA4-1	lnc-CRYBA4-1:31	ENSG00000244625	XLOC_014192	NA	NA	NA	inter
CUST_31278_PI429285431	0.8817153	A	0.8818093	A	0.999934846287623	0	lncRNA	33067-1_{1..2384}	n337739|AK094779|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|121|NULL|-0.8656390|-0.2389892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337739|AK094779|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|121|NULL|-0.8656390|-0.2389892	chr1	 19072975	 19075358	+	NA	NA	NA	NA	PAX7	NA	chr1:19062975-19075360	inner
CUST_49259_PI429285431	0.881932	A	0.9427985	A	0.958688146738722	0	lncRNA	53078-1_{1..360}	hg19_lincRNAsTranscripts_TCONS_l2_00022449 range=chr5:98264899-98312717 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022449 range=chr5:98264899-98312717 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 98264899	 98265258	+	NA	NA	NA	NA	CHD1	NA	chr5:98254899-98262238	inter
CUST_6909_PI429285431	3.1674762	A	3.825511	P	0.633740974036067	0	lncRNA	6859-1_{1..519}	"transcript_id ""ENST00000438574.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438574.1"" | genecode_v17"	chr22	 16199666	 16200184	-	ENSG00000225255.2	ENST00000438574.1	LA16c-83F12.6	LA16c-83F12.6-001	NA	NA	NA	inter
CUST_11108_PI429285431	0.8841196	A	0.8811208	A	1.00208077157193	0	lncRNA	12664-1_{1..885}	lnc-CD180-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD180-5:1	chr5	 65807385	 65808269	-	lnc-CD180-5	lnc-CD180-5:1	XLOC_004851	linc-SGTB-1	NA	NA	NA	inter
CUST_44719_PI429285431	2.7998478	A	3.8319745	P	0.488988790987645	0	lncRNA	49274-1_{1..608}	"gi|262118185|ref|NR_029462.1| Homo sapiens leukocyte specific transcript 1 (LST1), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|262118185|ref|NR_029462.1| Homo sapiens leukocyte specific transcript 1 (LST1), transcript variant 8, non-coding RNA"	NT_167249.1	  2884758	  2885365	+	7940	NR_029462.1	NA	NA	NA	NA	NA	Unknown
CUST_11656_PI429285431	7.409148	P	7.653854	P	0.843987770883143	0	lncRNA	13233-1_{1..1210}	lnc-ITGA11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITGA11-2:1	chr15	 68779500	 68780709	-	lnc-ITGA11-2	lnc-ITGA11-2:1	XLOC_011515	linc-ITGA11	NA	NA	NA	inter
LNCA_21_P0003237	3.4537556	P	3.4393654	P	1.01002443795722	0	lncRNA	TCONS_00006897	NA	NA	NA	NA	XLOC_002716	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002716), lincRNA [TCONS_00006897]"	chr3:80836715-80837997	hs|3p12.2	Agilent_HUMAN_G3V2	TCONS_00006897	TCONS_00006897	chr3	 80836715	 80837997	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2825_PI429285431	1.3598037	A	1.0114051	A	1.27314664242044	0	lncRNA	2808-1_{1..540}	"transcript_id ""ENST00000440935.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440935.1"" | genecode_v17"	chr7	 46517420	 46517959	-	ENSG00000230680.2	ENST00000440935.1	AC004869.2	AC004869.2-001	NA	NA	NA	inter
CUST_49532_PI429285431	1.3366017	A	0.88766265	A	1.36503604755136	0	lncRNA	53324-1_{1..931}	hg19_lincRNAsTranscripts_TCONS_l2_00024242 range=chr6:49755164-49788663 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024242 range=chr6:49755164-49788663 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 49755164	 49756094	+	NA	NA	NA	NA	PGK2	NA	chr6:49753364-49755053	inter
CUST_25217_PI429285431	0.8919965	A	0.90023005	A	0.994309192373444	0	lncRNA	26748-1_{1..577}	lnc-STC1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STC1-3:1	chr8	 24372088	 24372664	-	lnc-STC1-3	lnc-STC1-3:1	ENSG00000253643.1	RP11-561E1.1	ADAM7	NA	chr8:24362088-24366281	inter
CUST_43158_PI429285431	0.9024485	A	0.9085363	A	0.995789149193214	0	lncRNA	47973-1_{1..735}	ENST00000592238 havana:sense_intronic chromosome:GRCh37:17:35743821:35744861:1 gene:ENSG00000266942 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000592238 havana:sense_intronic chromosome:GRCh37:17:35743821:35744861:1 gene:ENSG00000266942 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr17	 35743821	 35744555	+	ENSG00000266942	ENST00000592238	NA	NA	ACACA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20chr17:35733821-35754861"	NA	inner
CUST_33401_PI429285431	6.544576	P	6.57205	P	0.981136656713781	0	lncRNA	34979-1_{1..879}	n340122|BC029589|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2581|NULL|-1.0018300|-0.1394451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340122|BC029589|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2581|NULL|-1.0018300|-0.1394451	chr10	101380811	101381689	+	NA	NA	NA	NA	SLC25A28	NA	chr10:101370811-101380221	inter
CUST_15254_PI429285431	0.9012161	A	1.1213272	A	0.858499322016769	0	lncRNA	16926-1_{1..551}	lnc-AKR1C2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AKR1C2-3:1	chr10	  4806162	  4806712	-	lnc-AKR1C2-3	lnc-AKR1C2-3:1	XLOC_008704	linc-KLF6-5	NA	NA	NA	inter
CUST_158_PI429201921	1.2842177	A	1.1212332	A	1.11960085984284	0	lncRNA	137-1_{1..3000}	TC07002781.hg.1	 TCONS_l2_00026375-XLOC_l2_013715 // Broad TUCP // linc-C7orf28B-1 chr7:-:6897190-6899423 // chr7 // 100 // 100 // 0 // --- // 0///TCONS_l2_00026374-XLOC_l2_013715 // Broad TUCP // linc-C7orf28B-1 chr7:-:6895313-6899319 // chr7 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr7:-:6895313-6899319	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00026374-XLOC_l2_013715	linc-C7orf28B-1	chr7	  6895313	  6899319	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004504	1.6846998	A	1.8813881	A	0.872551203564128	0	lncRNA	BC020897	NA	BC020897	NA	Hs.119998	XLOC_004398	NA	NA	THC2606109	NA	"BROAD Institute lincRNA (XLOC_004398), lincRNA [TCONS_00009974]"	chr5:56966007-56966066	hs|5q11.2	Agilent_HUMAN_G3V2	BC020897	BC020897	chr5	 56966007	 56966066	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51010_PI429285431	2.3798616	A	2.704995	A	0.798224574443258	0	lncRNA	54656-1_{1..427}	hg19_lincRNAsTranscripts_TCONS_l2_00006853 range=chr13:52027498-52042446 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006853 range=chr13:52027498-52042446 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 52027498	 52027924	+	NA	NA	NA	NA	INTS6	NA	chr13:52017498-52027275	inter
LNCA_21_P0004848	0.8930392	A	0.8908995	A	1.00148422739906	0	lncRNA	TCONS_00011714	NA	NA	NA	NA	XLOC_005192	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005192), lincRNA [TCONS_00011714]"	chr6:19538851-19539049	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00011714	TCONS_00011714	chr6	 19538851	 19539049	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47231_PI429285431	12.979052	P	13.054943	P	0.948755993834744	0	lncRNA	51306-1_{1..561}	"gi|213513397|ref|NR_015432.1| Homo sapiens long intergenic non-protein coding RNA 493 (LINC00493), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|213513397|ref|NR_015432.1| Homo sapiens long intergenic non-protein coding RNA 493 (LINC00493), non-coding RNA"	Chr20	 18548073	 18548633	+	388789	NR_015432.1	NA	NA	NA	NA	NA	inter
CUST_38847_PI429285431	1.5592849	A	1.7145205	A	0.897985714924853	0	lncRNA	39839-1_{1..2605}	n384684|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kcj.1||0.4714350|-0.3984821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384684|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kcj.1||0.4714350|-0.3984821	chr5	 72165554	 72168158	+	NA	NA	NA	NA	TNPO1	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80chr5:72155554-72178159"	NA	inner
CUST_2943_PI429285431	0.8882331	A	0.89513355	A	0.995228392998376	0	lncRNA	2924-1_{1..384}	"transcript_id ""ENST00000486508.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000486508.1"" | genecode_v17"	chr7	141985579	141985962	+	ENSG00000241881.1	ENST00000486508.1	U66059.58	U66059.58-001	NA	NA	NA	inter
CUST_25746_PI429285431	10.638321	P	10.385569	P	1.19147774134868	0	lncRNA	27272-1_{1..626}	lnc-HMBS-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMBS-1:10	chr11	118952169	118952794	+	lnc-HMBS-1	lnc-HMBS-1:10	ENSG00000160695.8	VPS11	HMBS	NA	chr11:118955587-118962675	inner
CUST_49564_PI429285431	0.9158562	A	0.9008081	A	1.01048513588295	0	lncRNA	53354-1_{1..520}	hg19_lincRNAsTranscripts_TCONS_l2_00024891 range=chr6:115954744-115965044 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024891 range=chr6:115954744-115965044 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	115954744	115955263	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9294_PI429285431	7.6389728	P	7.4100485	P	1.17196078782354	0	lncRNA	10799-2_{3001..4887}	lnc-KIAA0226-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-KIAA0226-2:1	chr3	197379410	197381296	-	lnc-KIAA0226-2	lnc-KIAA0226-2:1	XLOC_003406	linc-BDH1-2	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40"	NA	inter
CUST_43766_PI429285431	0.8956535	A	0.8916551	A	1.00277532378704	0	lncRNA	48503-1_{1..3000}	"gi|223278383|ref|NR_026778.1| Homo sapiens HNRNPU antisense RNA 1 (HNRNPU-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223278383|ref|NR_026778.1| Homo sapiens HNRNPU antisense RNA 1 (HNRNPU-AS1), non-coding RNA"	Chr1	245003940	245006939	-	284702	NR_026778.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_COX20:range=chr1:244999017-2450064785'pad=0,hg19_refFlat_COX20:range=chr1:244999017-2450064785'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10"	NA	inter
CUST_13839_PI429285431	5.3058763	P	5.8024645	P	0.708780982415346	0	lncRNA	15482-1_{1..397}	lnc-SGCE-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SGCE-1:4	chr7	 93936871	 93937267	-	lnc-SGCE-1	lnc-SGCE-1:4	XLOC_006525	linc-BET1-1	NA	NA	NA	inter
CUST_34275_PI429285431	0.9158909	A	0.92074406	A	0.996641697583835	0	lncRNA	35774-1_{1..2225}	n341131|AK098100|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3597|NULL|-0.9700100|-0.2843071	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341131|AK098100|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3597|NULL|-0.9700100|-0.2843071	chr11	118135307	118137531	+	NA	NA	NA	NA	MPZL2	NA	chr11:118125307-118135251	inter
CUST_47466_PI429285431	3.4140646	P	3.9647517	P	0.682694909686373	0	lncRNA	51491-2_{3001..3105}	"gi|225903433|ref|NR_027426.1| Homo sapiens uncharacterized LOC648691 (LOC648691), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225903433|ref|NR_027426.1| Homo sapiens uncharacterized LOC648691 (LOC648691), non-coding RNA"	Chr22	 22904756	 22904860	+	648691	NR_027426.1	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30"	NA	inter
CUST_690_PI429285431	0.8859112	A	0.96942747	A	0.943754635086166	0	lncRNA	683-1_{1..847}	"transcript_id ""ENST00000587748.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587748.1"" | genecode_v17"	chr2	  6766255	  6767101	-	ENSG00000236172.2	ENST00000587748.1	AC097517.2	AC097517.2-028	NA	NA	NA	inter
LNCA_21_P0005305	0.8981689	A	0.89568555	A	1.00172280938466	0	lncRNA	ENST00000457592	NA	NA	NA	NA	XLOC_006438	NA	ENST00000457592	NA	NA	"BROAD Institute lincRNA (XLOC_006438), lincRNA [TCONS_00013168]"	chr7:50241900-50241841	hs|7p12.2	Agilent_HUMAN_G3V2	ENST00000457592	ENST00000457592	chr7	 50241841	 50241900	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23573_PI429285431	3.7962465	P	4.44032	P	0.639903605359275	0	lncRNA	25141-1_{1..289}	lnc-ZNF18-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF18-2:1	chr17	 11779039	 11779327	-	lnc-ZNF18-2	lnc-ZNF18-2:1	ENSG00000263684.1	RP11-628O18.1	DNAH9	"hg19_refFlat_DNAH9:range=chr17:11501816-118728445'pad=0,hg19_refFlat_DNAH9:range=chr17:11501816-118728445'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10chr17:11769039-11789145"	NA	inner
CUST_18708_PI429285431	0.89227206	A	0.88916737	A	1.00215432434927	0	lncRNA	20406-1_{1..500}	lnc-MGAT4C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-MGAT4C-1:1	chr12	 87232443	 87232942	-	lnc-MGAT4C-1	lnc-MGAT4C-1:1	ENSG00000258185	RP11-202H2.1	MGAT4C	NA	chr12:87222443-87232681	inner
CUST_5710_PI429285431	8.468853	P	8.4584055	P	1.00726793936241	0	lncRNA	5634-1_{1..110}	"transcript_id ""ENST00000586026.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586026.1"" | genecode_v17"	chr17	  1953565	  1953674	-	ENSG00000267195.1	ENST00000586026.1	hsa-mir-212	hsa-mir-212.1-001	SMG6	NA	chr17:1963133-1963674	inter
CUST_601_PI429285431	1.4814755	A	1.9692576	A	0.713120557974745	0	lncRNA	593-1_{1..311}	"transcript_id ""ENST00000436739.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436739.1"" | genecode_v17"	chr1	230959387	230959697	-	ENSG00000225656.1	ENST00000436739.1	RP5-858B6.1	RP5-858B6.1-001	NA	NA	NA	inter
CUST_32654_PI429285431	0.885558	A	0.8846343	A	1.0006404650609	0	lncRNA	34306-2_{3001..5435}	n339278|CR627096|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1710|NULL|-1.0650200|-0.3359952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339278|CR627096|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1710|NULL|-1.0650200|-0.3359952	chr3	 31411477	 31413911	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36230_PI429285431	8.940447	P	9.102995	P	0.89344572731057	0	lncRNA	37480-1_{1..1833}	n344771|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_320|NULL|-1.3063900|-0.3216174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344771|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_320|NULL|-1.3063900|-0.3216174	chr14	 41423760	 41425592	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3684_PI429285431	2.7632222	A	2.6265197	A	1.09938941943199	0	lncRNA	3652-1_{1..889}	"transcript_id ""ENST00000600081.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600081.1"" | genecode_v17"	chr10	 46937608	 46938496	-	ENSG00000229227.3	ENST00000600081.1	RP11-38L15.2	RP11-38L15.2-005	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-27.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.80;hg19_refFlat_FAM35A:range=chr10:88911112-889504405'pad=0,hg19_refFlat_FAM35A:range=chr10:88911112-889504405'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-19.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60"	NA	inter
CUST_4977_PI429285431	1.3763053	A	1.1476343	A	1.17175503983079	0	lncRNA	4921-1_{1..567}	"transcript_id ""ENST00000554260.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554260.1"" | genecode_v17"	chr14	 97925168	 97925734	+	ENSG00000246084.2	ENST00000554260.1	CTD-2506J14.1	CTD-2506J14.1-002	NA	NA	NA	inter
CUST_11024_PI429285431	1.8381869	A	0.8927775	A	1.92573528315493	0	lncRNA	12570-1_{1..1186}	lnc-RASGRP1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASGRP1-4:1	chr15	 38364031	 38365216	-	lnc-RASGRP1-4	lnc-RASGRP1-4:1	XLOC_011430	linc-MEIS2-4	NA	NA	NA	inter
CUST_14636_PI429285431	0.8891797	A	0.9054434	A	0.988790165916984	0	lncRNA	16306-1_{1..654}	lnc-TMEM132B-4:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132B-4:9	chr12	126651422	126652075	+	lnc-TMEM132B-4	lnc-TMEM132B-4:9	XLOC_009937	linc-TMEM132C-12	NA	NA	NA	inter
CUST_34803_PI429285431	2.6526566	A	2.8446703	A	0.875383016915794	0	lncRNA	36239-1_{1..1463}	n341710|BC036431|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4182|NULL|-0.9495630|-0.2477996	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341710|BC036431|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4182|NULL|-0.9495630|-0.2477996	chr9	 84304627	 84306089	+	NA	NA	NA	NA	TLE1	NA	chr9:84294627-84303596	inter
CUST_29419_PI429285431	2.072806	A	2.4462805	P	0.771921207734606	0	lncRNA	31175-1_{1..485}	n332788|AF043342|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063739_11|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063739_11|-0.7035310|-0.1707653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332788|AF043342|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063739_11|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063739_11|-0.7035310|-0.1707653	chr6	  2875340	  2875824	+	NA	NA	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90"	NA	inter
CUST_35466_PI429285431	1.101701	A	1.0116348	A	1.06441902362957	0	lncRNA	36872-1_{1..516}	n342552|AY122474|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5051|NULL|-0.1396520|-0.3354495	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n342552|AY122474|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5051|NULL|-0.1396520|-0.3354495	chr20	 30009241	 30009756	-	NA	NA	NA	NA	DEFB121	NA	chr20:29999241-30000641	inter
CUST_25897_PI429285431	4.3562994	P	4.707553	P	0.783902645891106	0	lncRNA	27416-1_{1..1723}	lnc-EVX1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EVX1-5:2	chr7	 27228220	 27229942	+	lnc-EVX1-5	lnc-EVX1-5:2	ENSG00000240990.4	HOXA11-AS	HOXA10	"hg19_refFlat_HOXA11:range=chr7:27222415-272247635'pad=0,hg19_refFlat_HOXA11:range=chr7:27222415-272247635'pad=0 3'pad=0 strand=- repeatMasking=none,-105.50chr7:27218220-27219880"	NA	inter
CUST_4467_PI429285431	0.8915684	A	0.9001598	A	0.994062591803278	0	lncRNA	4417-1_{1..3000}	"transcript_id ""ENST00000502479.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502479.1"" | genecode_v17"	chr12	126443248	126446247	-	ENSG00000249267.2	ENST00000502479.1	RP5-916L7.1	RP5-916L7.1-001	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50"	NA	inter
CUST_49763_PI429285431	3.3186646	P	2.4816015	A	1.78640983625266	0	lncRNA	53528-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026562 range=chr7:51453002-51461071 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026562 range=chr7:51453002-51461071 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 51453002	 51456001	-	NA	NA	NA	NA	LOC100131871	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20chr7:51459730-51460910"	NA	inter
CUST_13124_PI429285431	2.5294025	A	0.9094214	A	3.07371009522937	0	lncRNA	14752-1_{1..994}	lnc-CTD-2523D13.1.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2523D13.1.1-1:5	chr11	119604367	119605360	+	lnc-CTD-2523D13.1.1-1	lnc-CTD-2523D13.1.1-1:5	XLOC_009299	linc-OAF-6	PVRL1	NA	chr11:119594367-119599435	inter
CUST_20547_PI429285431	7.0512323	P	7.075018	P	0.983648175692155	0	lncRNA	22188-1_{1..493}	lnc-KIF3B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIF3B-1:1	chr20	 30824236	 30824728	+	lnc-KIF3B-1	lnc-KIF3B-1:1	ENSG00000243952.1	RP11-392M18.5	POFUT1	NA	chr20:30814236-30826467	inner
CUST_2471_PI429285431	0.9032478	A	0.90218455	A	1.00073726038266	0	lncRNA	2463-1_{1..2272}	"transcript_id ""ENST00000563079.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563079.1"" | genecode_v17"	chr6	  4492041	  4494312	+	ENSG00000260239.1	ENST00000563079.1	RP11-274H24.1	RP11-274H24.1-001	NA	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40"	NA	inter
CUST_20870_PI429285431	3.081824	A	4.566168	P	0.357411014407027	0	lncRNA	22501-1_{1..525}	lnc-BMP2K-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-BMP2K-1:7	chr4	 80229427	 80229951	+	lnc-BMP2K-1	lnc-BMP2K-1:7	ENSG00000249307.1	RP11-438E5.1	NAA11	NA	chr4:80238272-80239809	inter
CUST_36500_PI429285431	0.9128686	A	0.91807175	A	0.996399947032953	0	lncRNA	37699-1_{1..696}	n345000|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_549|NULL|-1.3453400|-0.1748489	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345000|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_549|NULL|-1.3453400|-0.1748489	chr8	 49624285	 49624980	-	NA	NA	NA	NA	EFCAB1	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70chr8:49627474-49635326"	NA	inter
LNCA_21_P0003145	4.588222	P	5.1243963	P	0.68959714182008	0	lncRNA	TCONS_00006577	NA	NA	NA	NA	XLOC_003200	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003200), lincRNA [TCONS_00006577]"	chr3:106403860-106403801	hs|3q13.12	Agilent_HUMAN_G3V2	TCONS_00006577	TCONS_00006577	chr3	106403801	106403860	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20283_PI429285431	0.9273746	A	1.4399372	A	0.700976216102333	0	lncRNA	21926-1_{1..817}	lnc-CCRN4L-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCRN4L-4:1	chr4	139019343	139020159	+	lnc-CCRN4L-4	lnc-CCRN4L-4:1	ENSG00000250033.1	SLC7A11-AS1	NA	NA	NA	inter
CUST_37730_PI429285431	6.2875714	P	6.1626396	P	1.09045618270675	0	lncRNA	38825-1_{1..1875}	n346233|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1783|NULL|-1.3158100|-0.3214710	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346233|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1783|NULL|-1.3158100|-0.3214710	chr2	 39815588	 39817462	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50168_PI429285431	1.9403065	A	2.157174	A	0.860431650747594	0	lncRNA	53894-1_{1..341}	hg19_lincRNAsTranscripts_TCONS_l2_00029213 range=chr9:15036630-15065983 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029213 range=chr9:15036630-15065983 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 15036630	 15036970	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38009_PI429285431	9.392181	P	9.398928	P	0.995334254538522	0	lncRNA	39095-1_{1..3000}	n377583|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029948||0.3538940|-0.2939802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377583|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029948||0.3538940|-0.2939802	chr6	  2536689	  2539688	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30"	NA	inter
CUST_32833_PI429285431	0.8916848	A	0.9141053	A	0.984579427289661	0	lncRNA	34467-1_{1..983}	n339486|BC062470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1926|NULL|-1.0801100|-0.3050823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339486|BC062470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1926|NULL|-1.0801100|-0.3050823	chr21	 38435339	 38436321	-	NA	NA	NA	NA	TTC3	NA	chr21:38445571-38446341	inter
LNCA_21_P0002667	4.8118153	P	5.3667126	P	0.680705513374377	0	lncRNA	TCONS_00005192	NA	NA	NA	NA	XLOC_002192	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002192), lincRNA [TCONS_00005192]"	chr2:86130520-86130461	hs|2p11.2	Agilent_HUMAN_G3V2	TCONS_00005192	TCONS_00005192	chr2	 86130461	 86130520	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39630_PI429285431	0.8983878	A	0.9092022	A	0.992532053852305	0	lncRNA	40569-1_{1..601}	n405206|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000040974||-1.0445300|-0.4178458	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405206|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000040974||-1.0445300|-0.4178458	chr6	 53927194	 53927794	-	NA	NA	NA	NA	MLIP	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70chr6:53917194-53937853"	NA	inner
CUST_50901_PI429285431	5.151943	P	5.32932	P	0.884309320530676	0	lncRNA	54543-1_{1..793}	hg19_lincRNAsTranscripts_TCONS_l2_00006069 range=chr12:5347219-5353372 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006069 range=chr12:5347219-5353372 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  5347219	  5348011	-	NA	NA	NA	NA	LOC100507271	NA	chr12:5343813-5347432	inter
CUST_13093_PI429285431	0.90525526	A	1.4455693	A	0.687621214183413	0	lncRNA	14717-1_{1..292}	lnc-AC006372.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC006372.1-1:5	chr7	157309490	157309781	+	lnc-AC006372.1-1	lnc-AC006372.1-1:5	XLOC_006316	linc-WDR60-3	NA	NA	NA	inter
CUST_11676_PI429285431	2.1327162	A	1.174893	A	1.94237694126909	0	lncRNA	13254-1_{1..284}	lnc-CLCN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLCN3-1:1	chr4	170838105	170838388	+	lnc-CLCN3-1	lnc-CLCN3-1:1	XLOC_003772	linc-GALNTL6-7	NA	NA	NA	inter
CUST_20975_PI429285431	2.7584245	A	1.7438372	A	2.02032487244939	0	lncRNA	22605-1_{1..3000}	lnc-C10orf12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C10orf12-1:1	chr10	 98752207	 98755206	+	lnc-C10orf12-1	lnc-C10orf12-1:1	ENSG00000231025.1	RP11-175O19.4	SLIT1	NA	chr10:98757795-98765716	inter
CUST_32637_PI429285431	2.047527	A	1.6861567	A	1.28464549972116	0	lncRNA	34295-1_{1..2677}	n339261|AK057593|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1693|NULL|-1.0723400|-0.2289652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339261|AK057593|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1693|NULL|-1.0723400|-0.2289652	chr16	 68323989	 68326665	-	NA	NA	NA	NA	SLC7A6OS	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SLC7A6:range=chr16:68308630-683312315'pad=0,hg19_refFlat_SLC7A6:range=chr16:68308630-683312315'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-30.70;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50chr16:68334518-68336660"	NA	inner
CUST_32284_PI429285431	2.2617397	A	0.90211606	A	2.56618226045928	0	lncRNA	33969-1_{1..420}	n338862|AL355732|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1286|NULL|2.4086500|-0.2114336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338862|AL355732|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1286|NULL|2.4086500|-0.2114336	chr2	 64565203	 64565622	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32860_PI429285431	8.835302	P	8.615511	P	1.16456486634328	0	lncRNA	34490-1_{1..534}	n339522|AY040089|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1963|NULL|-1.1162900|-0.1587348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339522|AY040089|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1963|NULL|-1.1162900|-0.1587348	chr21	 43136595	 43137128	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3780_PI429285431	1.0358318	A	1.8655611	A	0.562634802389107	0	lncRNA	3748-1_{1..424}	"transcript_id ""ENST00000428200.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428200.1"" | genecode_v17"	chr10	104225775	104226198	+	ENSG00000243628.2	ENST00000428200.1	RP11-18I14.7	RP11-18I14.7-005	TMEM180	"hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10chr10:104221170-104236802"	NA	inner
CUST_20891_PI429285431	2.5546436	A	0.9157922	A	3.11417798219033	0	lncRNA	22522-2_{3001..4281}	lnc-ZCCHC17-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZCCHC17-4:1	chr1	 31202090	 31203370	+	lnc-ZCCHC17-4	lnc-ZCCHC17-4:1	ENSG00000186056.4	RP5-1166H10.2	MATN1	"hg19_refFlat_MATN1:range=chr1:31186429-311963985'pad=0,hg19_refFlat_MATN1:range=chr1:31186429-311963985'pad=0 3'pad=0 strand=- repeatMasking=none,-102.10chr1:31189090-31196432"	NA	inter
CUST_39130_PI429285431	11.838469	P	11.265462	P	1.48762098039901	0	lncRNA	40106-1_{1..1560}	n385727|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004cov.3||5.0496900|-0.4375385	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385727|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004cov.3||5.0496900|-0.4375385	chrM	    10578	    12137	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49489_PI429285431	0.91070217	A	1.090253	A	0.882977860638845	0	lncRNA	53281-1_{1..2245}	hg19_lincRNAsTranscripts_TCONS_l2_00024609 range=chr6:10466993-10482167 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024609 range=chr6:10466993-10482167 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 10466993	 10469237	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40122_PI429285431	8.541505	P	8.743802	P	0.869165611142255	0	lncRNA	40963-3_{6001..6979}	n407667|NR_027136|lncRNA|Homosapiens||RefGeneNoncode|NR_027136||2.1882900|-0.1812133	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n407667|NR_027136|lncRNA|Homosapiens||RefGeneNoncode|NR_027136||2.1882900|-0.1812133	chr1	 15444310	 15445288	-	NA	NA	NA	NA	KAZN	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_KAZN:range=chr1:14925494-154411315'pad=0,hg19_refFlat_KAZN:range=chr1:14925494-154411315'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr1:15428310-15444544"	NA	inter
CUST_23034_PI429285431	0.9124951	A	0.92176807	A	0.993593079393439	0	lncRNA	24605-1_{1..414}	lnc-GTDC1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTDC1-7:1	chr2	143929720	143930133	-	lnc-GTDC1-7	lnc-GTDC1-7:1	ENSG00000257284.1	RP11-190J23.1	ARHGAP15	NA	chr2:143919720-143939741	inner
CUST_50687_PI429285431	1.6053133	A	1.9020672	A	0.814082042207981	0	lncRNA	54358-2_{3001..3875}	hg19_lincRNAsTranscripts_TCONS_l2_00003048 range=chr10:48320921-48326093 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003048 range=chr10:48320921-48326093 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 48323921	 48324795	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013741	0.8875734	A	0.88704234	A	1.00036817049984	0	lncRNA	ENST00000411575	NA	BC035187	NA	Hs.410860	XLOC_l2_015322	NA	ENST00000411575	THC2497998	NA	"BROAD Institute lincRNA (XLOC_l2_015322), lincRNA [TCONS_l2_00030050]"	chr9:105902940-105902881	hs|9q31.1	Agilent_HUMAN_G3V2	ENST00000411575	ENST00000411575	chr9	105902881	105902940	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26318_PI429285431	3.812593	P	4.2784963	P	0.724017613532649	0	lncRNA	27825-1_{1..324}	lnc-TRPV2-1:19	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRPV2-1:19	chr17	 16342974	 16343297	+	lnc-TRPV2-1	lnc-TRPV2-1:19	ENSG00000175061.10	C17orf76-AS1	C17orf76	NA	chr17:16345328-16353019	inter
CUST_40089_PI429285431	0.8949601	A	0.8878831	A	1.00491745378139	0	lncRNA	40936-1_{1..2255}	n407443|NR_026901|lncRNA|Homosapiens||RefGeneNoncode|NR_026901||1.0878800|-0.1423065	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407443|NR_026901|lncRNA|Homosapiens||RefGeneNoncode|NR_026901||1.0878800|-0.1423065	chr17	  1188438	  1190692	+	NA	NA	NA	NA	TUSC5	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70chr17:1182957-1200693"	NA	inner
CUST_13314_PI429285431	0.8824037	A	0.8803539	A	1.00142182292384	0	lncRNA	14948-1_{1..2928}	lnc-MUC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MUC2-1:1	chr11	  1055114	  1058041	+	lnc-MUC2-1	lnc-MUC2-1:1	XLOC_009021	linc-MUC2-1	NA	"hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40"	NA	inter
LNCA_21_P0009112	0.8882965	A	0.8868366	A	1.00101243773832	0	lncRNA	TCONS_00024896	NA	NA	NA	NA	XLOC_011812	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011812), lincRNA [TCONS_00024896]"	chr16:86233035-86233094	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024896	TCONS_00024896	chr16	 86233035	 86233094	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50726_PI429285431	8.256696	P	8.45364	P	0.872396568269958	0	lncRNA	54394-1_{1..1419}	hg19_lincRNAsTranscripts_TCONS_l2_00003188 range=chr10:99474823-99477903 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003188 range=chr10:99474823-99477903 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 99474823	 99476241	+	NA	NA	NA	NA	MARVELD1	NA	chr10:99473465-99477909	inner
CUST_40489_PI429285431	8.115378	P	8.485764	P	0.773575495234341	0	lncRNA	41254-1_{1..2609}	n409424|NR_033821_7|lncRNA|Homosapiens||RefGeneNoncode|NR_033821_7||5.3001900|-0.2332053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409424|NR_033821_7|lncRNA|Homosapiens||RefGeneNoncode|NR_033821_7||5.3001900|-0.2332053	chr6	 30594612	 30597220	+	NA	NA	NA	NA	ATAT1	NA	chr6:30594613-30614598	inner
CUST_21005_PI429285431	1.6993475	A	1.958626	A	0.835505656096708	0	lncRNA	22634-1_{1..490}	lnc-RBP5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBP5-2:2	chr12	  7341342	  7341831	-	lnc-RBP5-2	lnc-RBP5-2:2	ENSG00000255572.1	RP11-273B20.3	PEX5	NA	chr12:7341759-7351620	inter
CUST_1682_PI429285431	3.720321	P	3.9808064	P	0.834806998318067	0	lncRNA	1666-1_{1..3000}	"transcript_id ""ENST00000507424.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507424.1"" | genecode_v17"	chr4	  6204055	  6207054	+	ENSG00000251408.1	ENST00000507424.1	RP11-586D19.2	RP11-586D19.2-001	JAKMIP1	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80chr4:6194055-6202318"	NA	inter
CUST_36809_PI429285431	0.88655764	A	0.8864713	A	1.0000598481184	0	lncRNA	37981-1_{1..302}	n345289|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_838|NULL|-1.3124800|-0.4288542	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345289|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_838|NULL|-1.3124800|-0.4288542	chr15	 49398530	 49398831	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14409_PI429285431	1.4244578	A	2.1450365	A	0.606853969511812	0	lncRNA	16068-1_{1..347}	lnc-GADD45G-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GADD45G-2:1	chr9	 92168394	 92168740	+	lnc-GADD45G-2	lnc-GADD45G-2:1	XLOC_007447	linc-GADD45G-2	NA	NA	NA	inter
CUST_1091_PI429285431	3.298445	P	3.1152704	A	1.13537950143013	0	lncRNA	1080-1_{1..996}	"transcript_id ""ENST00000600679.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600679.1"" | genecode_v17"	chr2	145425545	145426540	+	ENSG00000226674.3	ENST00000600679.1	AC074093.1	AC074093.1-024	NA	NA	NA	inter
CUST_49660_PI429285431	4.3394837	P	3.9972312	P	1.26773438106327	0	lncRNA	53441-1_{1..1328}	hg19_lincRNAsTranscripts_TCONS_l2_00026190 range=chr7:128171398-128259234 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026190 range=chr7:128171398-128259234 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	128171398	128172725	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5853_PI429285431	0.8844946	A	0.88246065	A	1.00141082098077	0	lncRNA	5782-1_{1..2117}	"transcript_id ""ENST00000587694.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587694.1"" | genecode_v17"	chr17	 40905949	 40908065	-	ENSG00000197291.4	ENST00000587694.1	RAMP2-AS1	RAMP2-AS1-003	EZH1	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr17:40895949-40897071"	NA	inter
LNCA_21_P0004927	0.8940301	A	0.89177847	A	1.0015619295294	0	lncRNA	TCONS_00011932	NA	NA	NA	NA	XLOC_005441	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005441), lincRNA [TCONS_00011932]"	chr6:114775096-114775155	hs|6q22.1	Agilent_HUMAN_G3V2	TCONS_00011932	TCONS_00011932	chr6	114775096	114775155	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22301_PI429285431	0.89853495	A	0.9071629	A	0.994037408014282	0	lncRNA	23901-1_{1..3000}	lnc-C8orf83-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C8orf83-2:1	chr8	 93887449	 93890448	-	lnc-C8orf83-2	lnc-C8orf83-2:1	ENSG00000248858.2	RP11-100L22.2	C8orf83	NA	chr8:93895758-93901730	inter
CUST_21356_PI429285431	1.6787016	A	2.1042988	A	0.744530471239522	0	lncRNA	22980-1_{1..563}	lnc-DPY19L2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DPY19L2-2:1	chr12	 64215709	 64216271	-	lnc-DPY19L2-2	lnc-DPY19L2-2:1	ENSG00000255850.1	RP11-415I12.5	SRGAP1	"hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.91;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_PABPC3:range=chr13:25670337-256722325'pad=0,hg19_refFlat_PABPC3:range=chr13:25670337-256722325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_PABPC1:range=chr8:101716526-1017338115'pad=0,hg19_refFlat_PABPC1:range=chr8:101716526-1017338115'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TMEM5:range=chr12:64173741-642028725'pad=0,hg19_refFlat_TMEM5:range=chr12:64173741-642028725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70chr12:64215524-64225936"	NA	inter
CUST_37543_PI429285431	2.1084301	A	2.8967903	A	0.579001824729173	0	lncRNA	38649-1_{1..631}	n346021|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1571|NULL|-1.5686100|-0.2627023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346021|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1571|NULL|-1.5686100|-0.2627023	chr1	 98675821	 98676451	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29085_PI429285431	3.586794	P	3.6317773	P	0.969301037070417	0	lncRNA	30816-1_{1..408}	n326578|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025987|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025987|-1.1456900|-0.3867873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326578|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025987|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025987|-1.1456900|-0.3867873	chr1	 67767900	 67768307	+	NA	NA	NA	NA	IL12RB2	NA	chr1:67773047-67780600	inter
CUST_1592_PI429285431	1.0048922	A	1.1301447	A	0.916843563509937	0	lncRNA	1578-1_{1..549}	"transcript_id ""ENST00000414102.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414102.1"" | genecode_v17"	chr3	186158134	186158682	+	ENSG00000234548.1	ENST00000414102.1	RP11-78H24.1	RP11-78H24.1-001	NA	NA	NA	inter
CUST_51337_PI429285431	10.465346	P	10.617326	P	0.900014406555997	0	lncRNA	54937-1_{1..437}	hg19_lincRNAsTranscripts_TCONS_l2_00008703 range=chr15:69354730-69363745 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008703 range=chr15:69354730-69363745 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 69354730	 69355166	+	NA	NA	NA	NA	NOX5	NA	chr15:69344730-69349501	inter
CUST_25470_PI429285431	6.217496	P	6.303326	P	0.942242296504013	0	lncRNA	27000-1_{1..542}	lnc-C1QTNF8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1QTNF8-2:1	chr16	  1207647	  1208188	-	lnc-C1QTNF8-2	lnc-C1QTNF8-2:1	ENSG00000260403.1	RP11-616M22.1	CACNA1H	NA	chr16:1203241-1217974	inner
CUST_27782_PI429285431	1.9330873	A	2.7481294	A	0.568391899849872	0	lncRNA	29367-1_{1..1203}	n325003|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078679|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078679|-0.2710000|-0.2755785	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325003|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078679|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078679|-0.2710000|-0.2755785	chr20	 31245071	 31246273	+	NA	NA	NA	NA	C20orf203	"hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30chr20:31235071-31239783"	NA	inter
CUST_49210_PI429285431	3.1197474	A	3.7315543	P	0.654376616030277	0	lncRNA	53029-1_{1..288}	hg19_lincRNAsTranscripts_TCONS_l2_00020892 range=chr4:174818370-174847044 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020892 range=chr4:174818370-174847044 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	174818370	174818657	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29889_PI429285431	3.8860393	P	4.0947714	P	0.865297356306673	0	lncRNA	31652-1_{1..202}	n333958|M12550|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194165|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194165|0.4504360|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333958|M12550|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194165|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194165|0.4504360|-1.0000000	chr18	 56892792	 56892993	+	NA	NA	NA	NA	GRP	NA	chr18:56882792-56898003	inner
CUST_2393_PI429285431	5.3958883	P	5.4515452	P	0.962156246299867	0	lncRNA	2386-1_{1..3000}	"transcript_id ""ENST00000524295.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524295.1"" | genecode_v17"	chr5	151329132	151332131	+	ENSG00000254226.1	ENST00000524295.1	CTB-12O2.1	CTB-12O2.1-001	NA	NA	NA	inter
CUST_7247_PI429285431	0.9039749	A	1.3785734	A	0.71966704446475	0	lncRNA	7936-1_{1..292}	"transcript_id ""ENST00000410657.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410657.1"" | genecode_v17"	chr8	  5768467	  5768758	-	ENSG00000222589.1	ENST00000410657.1	RN7SKP159	RN7SKP159-201	NA	NA	NA	inter
CUST_27407_PI429285431	0.9146953	A	0.9177024	A	0.99791780788917	0	lncRNA	28971-1_{1..372}	n324572|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039974|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039974|-1.3776300|-0.6289513	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324572|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039974|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039974|-1.3776300|-0.6289513	chr6	 19911816	 19912187	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31733_PI429285431	2.2855132	A	3.072692	A	0.579476154289178	0	lncRNA	33474-1_{1..2082}	n338268|AK026823|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|661|NULL|-1.1822100|-0.4256994	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338268|AK026823|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|661|NULL|-1.1822100|-0.4256994	chr14	 37853625	 37855706	-	NA	NA	NA	NA	MIPOL1	NA	chr14:37843625-37865696	inner
CUST_12423_PI429285431	5.1099753	P	5.1316266	P	0.985104514300096	0	lncRNA	14036-1_{1..1004}	lnc-HNRNPAB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HNRNPAB-2:1	chr5	177663760	177664763	+	lnc-HNRNPAB-2	lnc-HNRNPAB-2:1	XLOC_004673	linc-ZNF354B-1	COL23A1	NA	chr5:177664617-177674575	inter
LNCA_21_P0003840	0.9002765	A	0.9217665	A	0.98521465971317	0	lncRNA	TCONS_00008860	NA	NA	NA	NA	XLOC_003629	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003629), lincRNA [TCONS_00008860]"	chr4:104358174-104360811	hs|4q24	Agilent_HUMAN_G3V2	TCONS_00008860	TCONS_00008860	chr4	104358174	104360811	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009134	1.5964601	A	1.3687947	A	1.17093857739787	0	lncRNA	TCONS_00025055	NA	NA	NA	NA	XLOC_012009	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012009), lincRNA [TCONS_00025055]"	chr16:74411482-74411423	hs|16q23.1	Agilent_HUMAN_G3V2	TCONS_00025055	TCONS_00025055	chr16	 74411423	 74411482	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28869_PI429285431	0.91301715	A	0.914786	A	0.998774677930556	0	lncRNA	30583-1_{1..396}	n326290|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098612|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098612|-1.3423800|-0.3397395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326290|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098612|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098612|-1.3423800|-0.3397395	chr1	190753391	190753786	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37174_PI429285431	0.92059755	A	0.9589815	A	0.973745087517574	0	lncRNA	38289-1_{1..1170}	n345608|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1157|NULL|-1.3675000|-0.4221677	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345608|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1157|NULL|-1.3675000|-0.4221677	chr3	178670695	178671864	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38715_PI429285431	8.207941	P	7.385322	P	1.76861373741605	0	lncRNA	39709-1_{1..1602}	n384177|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bcc.1||3.0445200|-0.1372622	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n384177|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bcc.1||3.0445200|-0.1372622	chr22	 42486936	 42488537	+	NA	NA	NA	NA	NDUFA6	NA	chr22:42481530-42486888	inter
CUST_30225_PI429285431	9.392736	P	10.235796	P	0.557459924775234	0	lncRNA	32000-1_{1..256}	n335088|AJ844620|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249424|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249424|1.1926800|-0.2542402	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335088|AJ844620|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249424|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249424|1.1926800|-0.2542402	chr3	 50355532	 50355787	-	NA	NA	NA	NA	TUSC2	NA	chr3:50362341-50365668	inner
CUST_50401_PI429285431	4.418863	P	4.64335	P	0.85589931611239	0	lncRNA	54105-1_{1..565}	hg19_lincRNAsTranscripts_TCONS_l2_00030121 range=chrX:2527387-2544686 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030121 range=chrX:2527387-2544686 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	  2527387	  2527951	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9187_PI429285431	2.7491307	A	1.6666164	A	2.11772359315907	0	lncRNA	10700-2_{3001..3506}	lnc-HEATR2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-HEATR2-3:1	chr7	   567491	   567996	+	lnc-HEATR2-3	lnc-HEATR2-3:1	ENSG00000223855	XLOC_005958	PDGFA	NA	chr7:554491-559481	inter
CUST_2762_PI429285431	1.0702941	A	1.2935036	A	0.856657546780475	0	lncRNA	2745-1_{1..313}	"transcript_id ""ENST00000604183.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604183.1"" | genecode_v17"	chr7	 10980050	 10980362	+	ENSG00000271185.1	ENST00000604183.1	RP5-855F16.1	RP5-855F16.1-001	NDUFA4	NA	chr7:10971580-10979813	inter
CUST_1189_PI429285431	1.4091444	A	0.9034662	A	1.41979063215853	0	lncRNA	1180-1_{1..881}	"transcript_id ""ENST00000415357.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415357.1"" | genecode_v17"	chr2	189092547	189093427	-	ENSG00000231689.1	ENST00000415357.1	AC068718.1	AC068718.1-002	GULP1	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C18orf25:range=chr18:43795847-438430815'pad=0,hg19_refFlat_C18orf25:range=chr18:43795847-438430815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40chr2:189157390-189162361"	NA	inter
CUST_7330_PI429285431	0.90386593	A	0.91600245	A	0.991622890558206	0	lncRNA	8712-1_{1..293}	"transcript_id ""ENST00000410247.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410247.1"" | genecode_v17"	chr18	 43569619	 43569911	-	ENSG00000222179.1	ENST00000410247.1	RN7SKP26	RN7SKP26-201	PSTPIP2	NA	chr18:43563502-43579911	inner
CUST_9410_PI429285431	4.2373333	P	4.5699506	P	0.794094550412562	0	lncRNA	10913-1_{1..2327}	lnc-KLF15-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF15-2:1	chr3	126019522	126021848	-	lnc-KLF15-2	lnc-KLF15-2:1	XLOC_003235	linc-ALDH1L1-2	LOC644662	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr3:126009522-126010368"	NA	inter
LNCA_21_P0013661	0.9046874	A	0.91337174	A	0.993998555261352	0	lncRNA	TCONS_l2_00029383	NA	NA	NA	NA	XLOC_l2_015221	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015221), lincRNA [TCONS_l2_00029383]"	chr9:69894046-69893987	hs|9q21.11	Agilent_HUMAN_G3V2	TCONS_l2_00029383	TCONS_l2_00029383	chr9	 69893987	 69894046	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46071_PI429285431	0.90104395	A	0.9143189	A	0.990840710036422	0	lncRNA	50343-1_{1..591}	"gi|310122909|ref|XR_110362.1| PREDICTED: Homo sapiens HBcAg-binding protein (HBCBP), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310122909|ref|XR_110362.1| PREDICTED: Homo sapiens HBcAg-binding protein (HBCBP), misc_RNA"	NA	NA	NA	NA	NA	XR_110362.1	NA	NA	NA	NA	NA	Unknown
CUST_25339_PI429285431	3.6420608	P	4.0142035	P	0.772634123002592	0	lncRNA	26870-1_{1..622}	lnc-GTDC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTDC1-2:1	chr2	144498659	144499280	-	lnc-GTDC1-2	lnc-GTDC1-2:1	ENSG00000257277.1	RP11-434H14.1	ARHGAP15	NA	chr2:144488659-144508863	inner
CUST_8750_PI429285431	0.8941422	A	1.0614027	A	0.890532087304168	0	lncRNA	10292-1_{1..2543}	lnc-EMP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EMP2-2:1	chr16	 10559495	 10562037	-	lnc-EMP2-2	lnc-EMP2-2:1	ENSG00000249560	ENST00000515579	ATF7IP2	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80chr16:10549495-10569801"	NA	inner
CUST_43358_PI429285431	8.974102	P	9.197608	P	0.856481506206054	0	lncRNA	48176-1_{1..1766}	"gi|211971044|ref|NR_015434.1| Homo sapiens uncharacterized LOC148413 (LOC148413), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|211971044|ref|NR_015434.1| Homo sapiens uncharacterized LOC148413 (LOC148413), non-coding RNA"	Chr1	  1334910	  1336675	+	148413	NR_015434.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0005388	0.8989194	A	0.90501815	A	0.995781591220465	0	lncRNA	TCONS_00013474	NA	NA	NA	NA	XLOC_006122	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006122), lincRNA [TCONS_00013474]"	chr7:63498966-63500328	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_00013474	TCONS_00013474	chr7	 63498966	 63500328	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20798_PI429285431	1.5147623	A	1.8541927	A	0.790353294898878	0	lncRNA	22429-1_{1..383}	lnc-IRX2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IRX2-5:1	chr5	  3599978	  3600360	-	lnc-IRX2-5	lnc-IRX2-5:1	ENSG00000259603.1	CTD-2012M11.3	IRX1	"hg19_refFlat_IRX1:range=chr5:3596220-36011545'pad=0,hg19_refFlat_IRX1:range=chr5:3596220-36011545'pad=0 3'pad=0 strand=+ repeatMasking=none,-111.80chr5:3596168-3601517"	NA	inner
CUST_32293_PI429285431	0.8934975	A	0.8968209	A	0.997699045922696	0	lncRNA	33977-1_{1..2105}	n338870|AK123766|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1295|NULL|-1.1183200|-0.3786298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n338870|AK123766|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1295|NULL|-1.1183200|-0.3786298	chr2	 67350488	 67352592	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33524_PI429285431	7.334554	P	7.9297013	P	0.661976863525671	0	lncRNA	35092-1_{1..1157}	n340261|BC039551|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2722|NULL|-1.0343600|-0.3041437	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340261|BC039551|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2722|NULL|-1.0343600|-0.3041437	chr4	153855667	153856823	-	NA	NA	NA	NA	FHDC1	NA	chr4:153864135-153867989	inter
CUST_28021_PI429285431	0.90201455	A	0.9154907	A	0.990702535824575	0	lncRNA	29631-1_{1..707}	n325277|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328199|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328199|-0.9855120|-0.3243254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325277|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328199|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328199|-0.9855120|-0.3243254	chr2	 66507370	 66508076	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012253	5.1546965	P	6.073881	P	0.528807850546534	0	lncRNA	TCONS_l2_00017629	NA	NA	NA	NA	XLOC_l2_009312	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009312), lincRNA [TCONS_l2_00017629]"	chr22:21471542-21472546	hs|22q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00017629	TCONS_l2_00017629	chr22	 21471542	 21472546	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29655_PI429285431	4.3747506	P	4.424011	P	0.966431644733631	0	lncRNA	31417-1_{1..322}	n333276|AY033238|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083388|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083388|-1.2677000|-0.2098746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333276|AY033238|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083388|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083388|-1.2677000|-0.2098746	chr14	106452642	106452963	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22687_PI429285431	1.7890906	A	1.0575327	A	1.66043114707923	0	lncRNA	24270-1_{1..414}	lnc-SLC25A48-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A48-1:1	chr5	135235641	135236054	+	lnc-SLC25A48-1	lnc-SLC25A48-1:1	ENSG00000254239.1	GS1-39E22.2	IL9	NA	chr5:135227935-135231516	inter
LNCA_21_P0009453	0.89348537	A	0.98753524	A	0.936889060634395	0	lncRNA	TCONS_00026276	NA	NA	NA	NA	XLOC_012623	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012623), lincRNA [TCONS_00026276]"	chr18:9648483-9648542	hs|18p11.22	Agilent_HUMAN_G3V2	TCONS_00026276	TCONS_00026276	chr18	  9648483	  9648542	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35663_PI429285431	7.795827	P	6.7680755	P	2.03884415080928	0	lncRNA	37084-1_{1..948}	n342822|CR541801|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5325|NULL|7.3858300|-0.0951388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342822|CR541801|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5325|NULL|7.3858300|-0.0951388	chr7	134212663	134213610	+	NA	NA	NA	NA	AKR1B10	NA	chr7:134212344-134226166	inner
CUST_9962_PI429285431	0.91898274	A	0.9168766	A	1.00146093112451	0	lncRNA	11486-1_{1..793}	lnc-UBL5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBL5-1:1	chr19	  9912598	  9913390	+	lnc-UBL5-1	lnc-UBL5-1:1	XLOC_012959	linc-UBL5-1	FBXL12	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-56.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50chr19:9920943-9923112"	NA	inter
CUST_2125_PI429285431	0.91075563	A	0.9242037	A	0.990721818623189	0	lncRNA	2116-1_{1..495}	"transcript_id ""ENST00000506865.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506865.1"" | genecode_v17"	chr5	 31741940	 31742434	-	ENSG00000248813.1	ENST00000506865.1	RP11-5N11.4	RP11-5N11.4-001	NA	NA	NA	inter
CUST_28761_PI429285431	2.509014	A	2.6332226	A	0.917507209892068	0	lncRNA	30469-1_{1..426}	n326167|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092802|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092802|-1.1674800|-0.3771913	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326167|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092802|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092802|-1.1674800|-0.3771913	chr1	233162035	233162460	-	NA	NA	NA	NA	PCNXL2	NA	chr1:233152035-233182432	inner
CUST_48734_PI429285431	0.8869816	A	0.8883667	A	0.999040382567786	0	lncRNA	52573-1_{1..1343}	hg19_lincRNAsTranscripts_TCONS_l2_00014900 range=chr2:131223036-131258280 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014900 range=chr2:131223036-131258280 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	131223036	131224378	-	NA	NA	NA	NA	POTEI	NA	chr2:131220389-131266808	inter
CUST_13984_PI429285431	2.6296713	A	2.1727545	A	1.37260527103855	0	lncRNA	15629-1_{1..575}	lnc-GPT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPT2-1:1	chr16	 47012516	 47013090	+	lnc-GPT2-1	lnc-GPT2-1:1	XLOC_011704	linc-PHKB-2	DNAJA2	NA	chr16:47002516-47007625	inter
CUST_9444_PI429285431	10.176607	P	10.142203	P	1.02413364991932	0	lncRNA	10950-1_{1..452}	lnc-PPIAL4C-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPIAL4C-5:1	chr1	149231543	149231994	+	lnc-PPIAL4C-5	lnc-PPIAL4C-5:1	XLOC_000393	linc-PPIAL4A-4	NA	NA	NA	inter
CUST_2626_PI429285431	2.8086193	A	3.5131266	P	0.613652023366763	0	lncRNA	2613-1_{1..490}	"transcript_id ""ENST00000440246.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440246.1"" | genecode_v17"	chr6	132411673	132412162	+	ENSG00000236166.1	ENST00000440246.1	RP3-523C21.2	RP3-523C21.2-001	NA	NA	NA	inter
CUST_47456_PI429285431	1.0146987	A	1.0773612	A	0.957495425770591	0	lncRNA	51485-3_{6001..7716}	"gi|218082838|ref|NR_024583.1| Homo sapiens POM121 transmembrane nucleoporin-like 8 pseudogene (POM121L8P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|218082838|ref|NR_024583.1| Homo sapiens POM121 transmembrane nucleoporin-like 8 pseudogene (POM121L8P), non-coding RNA"	Chr22	 21642714	 21644429	+	29797	NR_024583.1	NA	NA	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0,hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-9.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70"	NA	inter
CUST_23338_PI429285431	0.90553766	A	1.1617523	A	0.837281909858001	0	lncRNA	24907-1_{1..2312}	lnc-FXR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FXR1-1:1	chr3	180698226	180700537	+	lnc-FXR1-1	lnc-FXR1-1:1	ENSG00000260356.1	RP11-436A20.4	FXR1	NA	chr3:180688226-180700541	inner
CUST_8144_PI429285431	7.9087887	P	7.958638	P	0.96603723327653	0	lncRNA	9747-1_{1..2989}	lnc-PHYHIP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHYHIP-2:1	chr8	 22277440	 22280428	-	lnc-PHYHIP-2	lnc-PHYHIP-2:1	ENSG00000248888	ENST00000513362	SLC39A14	"hg19_refFlat_SLC39A14:range=chr8:22262224-222772115'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222772115'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50chr8:22267440-22290192"	NA	inner
CUST_24236_PI429285431	0.890663	A	0.89300275	A	0.998379523276844	0	lncRNA	25787-1_{1..336}	lnc-PHYHIPL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHYHIPL-1:1	chr10	 61042322	 61042657	+	lnc-PHYHIPL-1	lnc-PHYHIPL-1:1	ENSG00000236556.1	RP11-443O13.3	FAM13C	NA	chr10:61032322-61052595	inner
CUST_778_PI429285431	3.1526048	A	2.6848931	A	1.38291424765154	0	lncRNA	770-1_{1..740}	"transcript_id ""ENST00000420130.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420130.1"" | genecode_v17"	chr2	 16497592	 16498331	-	ENSG00000232444.1	ENST00000420130.1	AC010745.4	AC010745.4-001	NA	NA	NA	inter
CUST_7155_PI429285431	0.89649016	A	0.88759106	A	1.00618744974511	0	lncRNA	7162-1_{1..303}	"transcript_id ""ENST00000494227.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000494227.2"" | genecode_v17"	chr1	 70345275	 70345577	+	ENSG00000240692.2	ENST00000494227.2	RN7SL538P	RN7SL538P-201	LRRC7	"hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90chr1:70335275-70355577"	NA	inner
LNCA_21_P0005705	1.6939892	A	2.0816047	A	0.764391955228953	0	lncRNA	TCONS_00014729	NA	NA	NA	NA	XLOC_006817	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006817), lincRNA [TCONS_00014729]"	chr8:62775111-62775170	hs|8q12.3	Agilent_HUMAN_G3V2	TCONS_00014729	TCONS_00014729	chr8	 62775111	 62775170	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36894_PI429285431	4.637879	P	4.3261313	P	1.2412104083856	0	lncRNA	38054-1_{1..605}	n345367|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_916|NULL|-1.5508500|-0.2082246	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345367|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_916|NULL|-1.5508500|-0.2082246	chr18	 67670266	 67670870	+	NA	NA	NA	NA	RTTN	NA	chr18:67671040-67680871	inter
CUST_37390_PI429285431	5.0618258	P	5.087569	P	0.982314431863829	0	lncRNA	38494-1_{1..668}	n345842|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1391|NULL|-1.6343200|-0.1336716	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345842|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1391|NULL|-1.6343200|-0.1336716	chr20	  4004381	  4005048	-	NA	NA	NA	NA	RNF24	"hg19_refFlat_FTL:range=chr19:49468765-494699925'pad=0,hg19_refFlat_FTL:range=chr19:49468765-494699925'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30chr20:3994381-3996216"	NA	inter
CUST_44270_PI429285431	0.8834284	A	0.88357896	A	0.999895645205835	0	lncRNA	48910-1_{1..3000}	"gi|377823734|ref|NR_046371.1| Homo sapiens ceruloplasmin (ferroxidase) (CP), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|377823734|ref|NR_046371.1| Homo sapiens ceruloplasmin (ferroxidase) (CP), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_046371.1	NA	NA	NA	"hg19_refFlat_HPS3:range=chr3:148847511-1488900095'pad=0,hg19_refFlat_HPS3:range=chr3:148847511-1488900095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40"	NA	Unknown
CUST_23509_PI429285431	0.8759508	A	5.6493144	P	0.0365657407826563	0	lncRNA	25076-1_{1..508}	lnc-IL5RA-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL5RA-6:3	chr3	   238290	   238797	-	lnc-IL5RA-6	lnc-IL5RA-6:3	ENSG00000224318.1	CHL1-AS2	CHL1	NA	chr3:238650-248542	inner
CUST_17418_PI429285431	0.92095745	A	1.0926403	A	0.88780648376398	0	lncRNA	19143-1_{1..364}	lnc-PCP4L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCP4L1-1:1	chr1	161265855	161266218	+	lnc-PCP4L1-1	lnc-PCP4L1-1:1	XLOC_000440	linc-SDHC	MPZ	NA	chr1:161274525-161276179	inter
CUST_25406_PI429285431	4.6601768	P	4.52538	P	1.09793816104316	0	lncRNA	26937-1_{1..924}	lnc-C17orf51-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf51-1:1	chr17	 21477504	 21478427	-	lnc-C17orf51-1	lnc-C17orf51-1:1	ENSG00000266050.1	AC113144.2	NA	NA	NA	inter
LNCA_21_P0006873	0.89272	A	0.89070576	A	1.00139713986876	0	lncRNA	TCONS_00018206	NA	NA	NA	NA	XLOC_008486	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008486), lincRNA [TCONS_00018206]"	chr10:58073693-58073752	hs|10q21.1	Agilent_HUMAN_G3V2	TCONS_00018206	TCONS_00018206	chr10	 58073693	 58073752	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20462_PI429285431	1.4204316	A	1.3834462	A	1.02596776254334	0	lncRNA	22106-1_{1..1302}	lnc-MIA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MIA3-1:1	chr1	222854952	222856253	+	lnc-MIA3-1	lnc-MIA3-1:1	ENSG00000244697.1	RP11-378J18.5	AIDA	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20chr1:222844952-222866105"	NA	inner
CUST_17749_PI429285431	1.1640172	A	1.8015149	A	0.642826941437689	0	lncRNA	19479-1_{1..763}	lnc-STARD10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STARD10-1:1	chr11	 72523678	 72524440	-	lnc-STARD10-1	lnc-STARD10-1:1	XLOC_009498	linc-STARD10	ATG16L2	NA	chr11:72525451-72534260	inter
CUST_39890_PI429285431	0.90229213	A	1.0069503	A	0.930025275303855	0	lncRNA	40777-1_{1..3000}	n406583|NR_024099|lncRNA|Homosapiens||RefGeneNoncode|NR_024099||3.4893500|-0.3528647	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406583|NR_024099|lncRNA|Homosapiens||RefGeneNoncode|NR_024099||3.4893500|-0.3528647	chr1	216676595	216679594	-	NA	NA	NA	NA	ESRRG	NA	chr1:216676588-216906795	inner
CUST_4089_PI429285431	0.9129936	A	1.0579312	A	0.904418494971223	0	lncRNA	4050-1_{1..578}	"transcript_id ""ENST00000602803.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602803.1"" | genecode_v17"	chr11	115628994	115629571	-	ENSG00000246100.3	ENST00000602803.1	CTC-774J1.2	CTC-774J1.2-006	NA	NA	NA	inter
CUST_20134_PI429285431	1.4164602	A	2.39638	A	0.507007923886887	0	lncRNA	21781-1_{1..410}	lnc-BAG2-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BAG2-2:5	chr6	 57299769	 57300178	+	lnc-BAG2-2	lnc-BAG2-2:5	ENSG00000146143.12	PRIM2	PRIM2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00chr6:57289769-57309990"	NA	inner
LNCA_21_P0004465	0.89679897	A	1.8868682	A	0.50345361543185	0	lncRNA	TCONS_00010548	NA	NA	NA	NA	XLOC_005076	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005076), lincRNA [TCONS_00010548]"	chr5:169010401-169005624	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00010548	TCONS_00010548	chr5	169005624	169010401	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10014_PI429285431	0.9117563	A	0.9244414	A	0.99124590092502	0	lncRNA	11539-1_{1..2028}	lnc-ZNF736-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF736-1:2	chr7	 63834945	 63836972	+	lnc-ZNF736-1	lnc-ZNF736-1:2	XLOC_006123	linc-ZNF107-6	NA	NA	NA	inter
CUST_4979_PI429285431	1.2442154	A	1.0859907	A	1.1159131124493	0	lncRNA	4923-1_{1..740}	"transcript_id ""ENST00000554197.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554197.1"" | genecode_v17"	chr14	 98112384	 98113123	-	ENSG00000197176.3	ENST00000554197.1	RP11-76E12.1	RP11-76E12.1-002	NA	NA	NA	inter
CUST_37183_PI429285431	0.88498247	A	0.8855263	A	0.999623116807116	0	lncRNA	38298-1_{1..2101}	n345617|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1166|NULL|-1.3161100|-0.2659045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345617|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1166|NULL|-1.3161100|-0.2659045	chr4	129515067	129517167	+	NA	NA	NA	NA	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40"	NA	inter
CUST_23835_PI429285431	0.90918654	A	0.9151406	A	0.995881464623763	0	lncRNA	25398-1_{1..569}	lnc-CCZ1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCZ1B-1:1	chr7	  6836407	  6836975	-	lnc-CCZ1B-1	lnc-CCZ1B-1:1	ENSG00000226150.1	AC073343.11	RSPH10B2	NA	chr7:6826407-6838396	inner
CUST_47054_PI429285431	0.89346945	A	0.9003664	A	0.995230807440446	0	lncRNA	51141-2_{3001..3418}	"gi|322303763|ref|NR_037802.1| Homo sapiens ZNF625-ZNF20 readthrough (ZNF625-ZNF20), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|322303763|ref|NR_037802.1| Homo sapiens ZNF625-ZNF20 readthrough (ZNF625-ZNF20), non-coding RNA"	Chr19	 12245165	 12245582	-	100529855	NR_037802.1	NA	NA	NA	NA	NA	inter
CUST_8676_PI429285431	2.0618322	A	2.4818647	A	0.74740778706081	0	lncRNA	10225-1_{1..3000}	lnc-CCT7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCT7-1:1	chr2	 73513036	 73516035	+	lnc-CCT7-1	lnc-CCT7-1:1	ENSG00000246432	AC010913.1	EGR4	NA	chr2:73518057-73520829	inner
CUST_29970_PI429285431	8.847506	P	8.574044	P	1.20870484980608	0	lncRNA	31736-1_{1..362}	n334213|S58359|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000215871|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000215871|0.7102960|-0.0866813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334213|S58359|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000215871|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000215871|0.7102960|-0.0866813	chrX	153764206	153764567	-	NA	NA	NA	NA	IKBKG	NA	chrX:153770459-153785148	inner
LNCA_21_P0007355	0.89785886	A	0.8954982	A	1.00163762426774	0	lncRNA	TCONS_00019644	NA	NA	NA	NA	XLOC_009447	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009447), lincRNA [TCONS_00019644]"	chr11:60795003-60794944	hs|11q12.2	Agilent_HUMAN_G3V2	TCONS_00019644	TCONS_00019644	chr11	 60794944	 60795003	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51056_PI429285431	1.8441982	A	2.315444	A	0.721341433997711	0	lncRNA	54696-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00007082 range=chr13:24513744-24528372 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007082 range=chr13:24513744-24528372 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 24513744	 24516743	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38016_PI429285431	1.6281315	A	2.0497003	A	0.74661230957163	0	lncRNA	39101-1_{1..1064}	n377589|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029954||1.7208900|-0.1020890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377589|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029954||1.7208900|-0.1020890	chr6	  1406087	  1407150	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30"	NA	inter
CUST_31907_PI429285431	1.9012836	A	2.8208606	A	0.528664002509353	0	lncRNA	33638-1_{1..3000}	n338463|AK127212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|860|NULL|-0.3633520|-0.2065963	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338463|AK127212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|860|NULL|-0.3633520|-0.2065963	chr1	201864963	201867962	+	NA	NA	NA	NA	LMOD1	"hg19_refFlat_LMOD1:range=chr1:201867500-2019154685'pad=0,hg19_refFlat_LMOD1:range=chr1:201867500-2019154685'pad=0 3'pad=0 strand=- repeatMasking=none,-105.50chr1:201865584-201879105"	NA	inner
CUST_8651_PI429285431	0.88774467	A	0.8921245	A	0.996968736768029	0	lncRNA	10203-1_{1..596}	lnc-METTL15-4:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-METTL15-4:9	chr11	 27680718	 27681313	+	lnc-METTL15-4	lnc-METTL15-4:9	ENSG00000245573	AC104563.1	BDNF	NA	chr11:27676440-27691196	inter
CUST_13879_PI429285431	1.3975348	A	1.7092189	A	0.80570069214383	0	lncRNA	15525-1_{1..3000}	lnc-CRYBA4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CRYBA4-1:2	chr22	 27064121	 27067120	+	lnc-CRYBA4-1	lnc-CRYBA4-1:2	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
CUST_30954_PI429285431	2.5508518	A	1.050191	A	2.829722930646	0	lncRNA	32742-1_{1..445}	n337073|DQ192290|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342391|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342391|3.1734500|-0.1040348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337073|DQ192290|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342391|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342391|3.1734500|-0.1040348	chr21	 35736323	 35736767	+	NA	NA	NA	NA	FAM165B	NA	chr21:35747749-35753084	inner
CUST_24743_PI429285431	4.8862925	P	4.8102994	P	1.05408638188336	0	lncRNA	26288-1_{1..2189}	lnc-MRPL3-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPL3-2:4	chr3	131047692	131049880	-	lnc-MRPL3-2	lnc-MRPL3-2:4	ENSG00000250608.1	RP11-933H2.4	NEK11	NA	chr3:131037692-131059712	inter
LNCA_21_P0013747	0.8947211	A	0.9175616	A	0.9842928364574	0	lncRNA	TCONS_l2_00030118	NA	NA	NA	NA	XLOC_l2_015438	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015438), lincRNA [TCONS_l2_00030118]"	chrX:1881853-1881912	hs|Xp22.33	Agilent_HUMAN_G3V2	TCONS_l2_00030118	TCONS_l2_00030118	chrX	  1881853	  1881912	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10339_PI429285431	0.884746	A	1.1682786	A	0.821576829630041	0	lncRNA	11868-1_{1..751}	lnc-AC009365.3.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AC009365.3.1-2:1	chr7	132445078	132445828	+	lnc-AC009365.3.1-2	lnc-AC009365.3.1-2:1	XLOC_006255	linc-EXOC4-3	NA	NA	NA	inter
CUST_46113_PI429285431	1.6650237	A	1.42685	A	1.17949859494852	0	lncRNA	50374-1_{1..3000}	"gi|332000006|ref|NR_038161.1| Homo sapiens mitochondrial ribosomal protein L42 (MRPL42), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|332000006|ref|NR_038161.1| Homo sapiens mitochondrial ribosomal protein L42 (MRPL42), transcript variant 5, non-coding RNA"	Chr12	 93861266	 93864265	+	28977	NR_038161.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
CUST_19722_PI429285431	1.5601044	A	0.926029	A	1.55194281607919	0	lncRNA	21380-1_{1..1117}	lnc-RP11-809H16.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-809H16.2.1-1:1	chr15	 69320555	 69321671	+	lnc-RP11-809H16.2.1-1	lnc-RP11-809H16.2.1-1:1	ENSG00000137808.12	RP11-809H16.2	NOX5	NA	chr15:69310555-69331229	inter
CUST_38229_PI429285431	1.3896021	A	0.90486085	A	1.39933486981375	0	lncRNA	39292-1_{1..3000}	n381629|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001mwq.1||0.0767351|-0.2972645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381629|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001mwq.1||0.0767351|-0.2972645	chr11	 36505322	 36508321	-	NA	NA	NA	NA	TRAF6	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.34;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70chr11:36505317-36518995"	NA	inner
CUST_48617_PI429285431	3.0858898	P	1.9109037	A	2.25790705514692	0	lncRNA	52464-1_{1..1285}	hg19_lincRNAsTranscripts_TCONS_l2_00015378 range=chr2:71251205-71257058 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015378 range=chr2:71251205-71257058 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 71251205	 71252489	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19304_PI429285431	6.126854	P	6.1189613	P	1.00548579492065	0	lncRNA	20970-1_{1..306}	lnc-SENP5-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SENP5-2:4	chr3	196731365	196731670	+	lnc-SENP5-2	lnc-SENP5-2:4	ENSG00000228109.1	MFI2-AS1	MFI2	NA	chr3:196721365-196741609	inner
CUST_261_PI429285431	0.9923469	A	0.9195263	A	1.05177098271456	0	lncRNA	253-1_{1..445}	"transcript_id ""ENST00000420659.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420659.1"" | genecode_v17"	chr1	 63466168	 63466612	-	ENSG00000229537.1	ENST00000420659.1	RP11-5P4.1	RP11-5P4.1-001	NA	NA	NA	inter
LNCA_19_P00320275	7.418679	P	7.588263	P	0.889099015221797	0	lncRNA	ENST00000498732	NA	NA	NA	NA	XLOC_008079	NA	ENST00000498732	NA	NA	"BROAD Institute lincRNA (XLOC_008079), lincRNA [TCONS_00017468]"	chrX:139854449-139854508	hs|Xq27.1	Agilent_HUMAN_G3V2	ENST00000498732	ENST00000498732	chrX	139854449	139854508	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40747_PI429285431	5.4310145	P	4.8871183	P	1.4579044807439	0	lncRNA	41475-1_{1..1593}	n410457|NR_037600|lncRNA|Homosapiens||RefGeneNoncode|NR_037600||-1.0425000|-0.3165574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410457|NR_037600|lncRNA|Homosapiens||RefGeneNoncode|NR_037600||-1.0425000|-0.3165574	chr15	 93426072	 93427664	+	NA	NA	NA	NA	CHD2	NA	chr15:93443551-93451977	inter
CUST_21259_PI429285431	4.3964715	P	4.5242352	P	0.915249065117344	0	lncRNA	22884-1_{1..224}	lnc-RESP18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RESP18-1:1	chr2	220290803	220291026	-	lnc-RESP18-1	lnc-RESP18-1:1	ENSG00000234638.1	AC053503.6	SPEG	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40chr2:220299700-220300906"	NA	inner
CUST_43508_PI429285431	0.9094358	A	1.9876478	A	0.473615433722939	0	lncRNA	48297-1_{1..3000}	"gi|224177485|ref|NR_026985.1| Homo sapiens uncharacterized LOC339524 (LOC339524), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224177485|ref|NR_026985.1| Homo sapiens uncharacterized LOC339524 (LOC339524), transcript variant 1, non-coding RNA"	Chr1	 87597609	 87600608	+	339524	NR_026985.1	NA	NA	NA	NA	NA	inter
CUST_45945_PI429285431	3.8207636	P	2.703119	A	2.16992412902472	0	lncRNA	50246-1_{1..3000}	"gi|242247131|ref|NR_027948.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant beta, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|242247131|ref|NR_027948.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant beta, non-coding RNA"	Chr12	  1100404	  1103403	+	23085	NR_027948.1	NA	NA	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10"	NA	inter
CUST_27502_PI429285431	2.2365599	A	3.2175417	A	0.506634841378945	0	lncRNA	29074-2_{3001..6000}	n324681|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000075332|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000075332|2.7187300|-0.1573271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324681|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000075332|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000075332|2.7187300|-0.1573271	chr22	 29698642	 29701641	+	NA	NA	NA	NA	GAS2L1	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-56.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-55.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr22:29702997-29708774"	NA	inner
CUST_14982_PI429285431	1.2221576	A	1.6017154	A	0.768673160306854	0	lncRNA	16645-1_{1..476}	lnc-IAH1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IAH1-2:3	chr2	  9712787	  9713262	+	lnc-IAH1-2	lnc-IAH1-2:3	XLOC_001338	linc-TAF1B-3	NA	NA	NA	inter
CUST_30170_PI429285431	0.8871229	A	0.8952048	A	0.994413715443166	0	lncRNA	31944-1_{1..520}	n334862|AJ315537|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247165_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247165_05|-0.9185930|-0.2556143	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334862|AJ315537|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247165_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247165_05|-0.9185930|-0.2556143	chr6	  3192746	  3193265	+	NA	NA	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-62.00"	NA	inter
CUST_48919_PI429285431	0.9080702	A	0.90540373	A	1.00184996524074	0	lncRNA	52761-1_{1..2078}	hg19_lincRNAsTranscripts_TCONS_l2_00018856 range=chr3:129930776-129963708 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018856 range=chr3:129930776-129963708 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	129930776	129932853	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33098_PI429285431	1.1989577	A	1.4351819	A	0.848964304087618	0	lncRNA	34700-1_{1..1618}	n339787|BC022425|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2234|NULL|-1.2203800|-0.3013416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339787|BC022425|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2234|NULL|-1.2203800|-0.3013416	chr18	  7814115	  7815732	+	NA	NA	NA	NA	PTPRM	NA	chr18:7804115-7825710	inner
CUST_41339_PI429285431	3.0218205	P	3.0424798	P	0.985782107067782	0	lncRNA	42402-1_{1..84}	ENST00000582802 ncrna:miRNA chromosome:GRCh37:14:27377848:27377931:1 gene:ENSG00000265165 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582802 ncrna:miRNA chromosome:GRCh37:14:27377848:27377931:1 gene:ENSG00000265165 gene_biotype:miRNA transcript_biotype:miRNA	chr14	 27377848	 27377931	+	ENSG00000265165	ENST00000582802	NA	NA	NA	NA	NA	inter
CUST_44345_PI429285431	3.365809	P	3.4432535	P	0.9477349192953	0	lncRNA	48970-1_{1..3000}	"gi|209954685|ref|NR_024253.1| Homo sapiens family with sequence similarity 86, member E, pseudogene (FAM86EP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209954685|ref|NR_024253.1| Homo sapiens family with sequence similarity 86, member E, pseudogene (FAM86EP), non-coding RNA"	NA	NA	NA	NA	NA	NR_024253.1	NA	NA	NA	"hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90"	NA	Unknown
CUST_31775_PI429285431	5.807767	P	5.769019	P	1.02722199566784	0	lncRNA	33516-1_{1..3000}	n338318|BX648929|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|712|NULL|-1.1313700|-0.3718485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338318|BX648929|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|712|NULL|-1.1313700|-0.3718485	chr14	 57822163	 57825162	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7570_PI429285431	0.8913582	A	0.8936737	A	0.998396304998712	0	lncRNA	9205-1_{1..1690}	lnc-TRIP4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRIP4-2:1	chr15	 64667517	 64669206	+	lnc-TRIP4-2	lnc-TRIP4-2:1	ENSG00000247333	AC087632.1	KIAA0101	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr15:64657517-64673702"	NA	inner
CUST_30388_PI429285431	9.121233	P	9.263866	P	0.905864392037476	0	lncRNA	32168-1_{1..251}	n335505|BC057782|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259720|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259720|-0.9268900|-0.2514455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335505|BC057782|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259720|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259720|-0.9268900|-0.2514455	chr9	118916070	118916320	+	NA	NA	NA	NA	PAPPA	NA	chr9:118916071-118926321	inner
CUST_10491_PI429285431	3.8286319	P	4.101329	P	0.827770591814518	0	lncRNA	12019-1_{1..708}	lnc-FABP3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FABP3-2:1	chr1	 31943913	 31944620	-	lnc-FABP3-2	lnc-FABP3-2:1	XLOC_000771	linc-FABP3-2	NA	NA	NA	inter
LNCA_19_P00317337	4.1006203	P	4.5920763	P	0.711306868682692	0	lncRNA	ENST00000434020	XR_109976	XR_109976	NA	Hs.127112	LOC100506047	NA	ENST00000434020	THC2622442	NA	"PREDICTED: Homo sapiens hypothetical LOC100506047 (LOC100506047), miscRNA [XR_109976]"	chr2:43329526-43329467	hs|2p21	Agilent_HUMAN_G3V2	ENST00000434020	ENST00000434020	chr2	 43329467	 43329526	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35742_PI429285431	1.8548336	A	1.6288428	A	1.16958020566892	0	lncRNA	37159-1_{1..1471}	n342913|CR625009|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5421|NULL|-1.2475200|-0.3781354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342913|CR625009|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5421|NULL|-1.2475200|-0.3781354	chr12	133681528	133682998	-	NA	NA	NA	NA	ZNF140	"hg19_refFlat_ZNF140:range=chr12:133657907-1336832375'pad=0,hg19_refFlat_ZNF140:range=chr12:133657907-1336832375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90chr12:133671528-133684260"	NA	inner
CUST_27046_PI429285431	5.0141015	P	5.2399235	P	0.855107674738068	0	lncRNA	28578-1_{1..501}	n324154|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000106442|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000106442|-1.2748600|-0.4420948	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324154|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000106442|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000106442|-1.2748600|-0.4420948	chr9	  7950412	  7950912	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47019_PI429285431	5.3449974	P	5.5022197	P	0.896749971845274	0	lncRNA	51113-1_{1..3000}	"gi|385275062|ref|NR_047652.1| Homo sapiens histocompatibility (minor) HA-1 (HMHA1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385275062|ref|NR_047652.1| Homo sapiens histocompatibility (minor) HA-1 (HMHA1), transcript variant 3, non-coding RNA"	Chr19	  1076633	  1079632	+	23526	NR_047652.1	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40"	NA	inter
CUST_25918_PI429285431	1.838072	A	1.7151929	A	1.08890575958286	0	lncRNA	27437-1_{1..356}	lnc-PLEKHA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PLEKHA2-1:1	chr8	 38659706	 38660061	+	lnc-PLEKHA2-1	lnc-PLEKHA2-1:1	ENSG00000253586.1	RP11-723D22.2	TACC1	NA	chr8:38649706-38669814	inner
CUST_38824_PI429285431	6.637724	P	6.5486765	P	1.06366769303414	0	lncRNA	39818-1_{1..1984}	n384614|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jgq.1||1.3453200|-0.2858973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384614|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jgq.1||1.3453200|-0.2858973	chr5	 23951456	 23953439	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32531_PI429285431	7.779441	P	8.661416	P	0.542624088818366	0	lncRNA	34197-1_{1..445}	n339138|BC031974|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1568|NULL|-1.1228300|-0.3359335	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n339138|BC031974|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1568|NULL|-1.1228300|-0.3359335	chr2	217731054	217731498	-	NA	NA	NA	NA	TNP1	NA	chr2:217724181-217724782	inter
CUST_8304_PI429285431	3.088888	A	3.7041974	P	0.652789881384798	0	lncRNA	9889-1_{1..602}	lnc-PHF15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PHF15-1:1	chr5	133844097	133844698	+	lnc-PHF15-1	lnc-PHF15-1:1	ENSG00000251169	AC005355.2	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00"	NA	inter
CUST_10483_PI429285431	2.535429	A	3.9692252	P	0.370155610245223	0	lncRNA	12011-1_{1..1284}	lnc-RPL13-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPL13-1:2	chr16	 89564494	 89565777	+	lnc-RPL13-1	lnc-RPL13-1:2	XLOC_011834	linc-SPG7	ANKRD11	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.41;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr16:89554494-89556969"	NA	inter
CUST_17945_PI429285431	4.4412007	P	4.497162	P	0.961953258518494	0	lncRNA	19676-1_{1..726}	lnc-TMEM18-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM18-6:1	chr2	   748114	   748839	-	lnc-TMEM18-6	lnc-TMEM18-6:1	XLOC_001935	linc-TMEM18-7	NA	NA	NA	inter
CUST_17014_PI429285431	0.8959998	A	1.0559871	A	0.895032949840778	0	lncRNA	18725-1_{1..1102}	lnc-TBL1XR1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TBL1XR1-4:1	chr3	176354435	176355536	-	lnc-TBL1XR1-4	lnc-TBL1XR1-4:1	XLOC_003331	linc-SPATA16-1	NA	NA	NA	inter
CUST_25043_PI429285431	0.8972757	A	0.911607	A	0.990115476042277	0	lncRNA	26582-1_{1..632}	lnc-TCEAL4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCEAL4-2:1	chrX	102754705	102755336	+	lnc-TCEAL4-2	lnc-TCEAL4-2:1	ENSG00000234405.1	LL0XNC01-250H12.3	RAB40A	"hg19_refFlat_RAB40B:range=chr17:80615739-806564725'pad=0,hg19_refFlat_RAB40B:range=chr17:80615739-806564725'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_RAB40A:range=chrX:102754851-1027556845'pad=0,hg19_refFlat_RAB40A:range=chrX:102754851-1027556845'pad=0 3'pad=0 strand=- repeatMasking=none,-93.40;hg19_refFlat_RAB40AL:range=chrX:102192247-1021930835'pad=0,hg19_refFlat_RAB40AL:range=chrX:102192247-1021930835'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40chrX:102754681-102765245"	NA	inner
LNCA_33_P3236748	4.443976	P	4.389318	P	1.03861286435268	0	lncRNA	XR_111551	XR_111551	XR_111551	   400454	Hs.531264	UNQ9370	IFMQ9370	ENST00000556630	NP1214292	NA	"PREDICTED: Homo sapiens IFMQ9370 (UNQ9370), miscRNA [XR_111551]"	chr15:93749898-93749957	hs|15q26.1	Agilent_HUMAN_G3V2	XR_111551	XR_111551	chr15	 93749898	 93749957	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45830_PI429285431	11.011971	P	11.171459	P	0.895342763959369	0	lncRNA	50164-1_{1..2096}	"gi|312176380|ref|NR_037567.1| Homo sapiens mitochondrial ribosomal protein L49 (MRPL49), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|312176380|ref|NR_037567.1| Homo sapiens mitochondrial ribosomal protein L49 (MRPL49), transcript variant 2, non-coding RNA"	Chr11	 64889655	 64891750	+	740	NR_037567.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20"	NA	inter
CUST_93_PI429201921	0.934158	A	0.90754884	A	1.01861520655119	0	lncRNA	96-1_{1..2729}	TC07003253.hg.1	TCONS_l2_00027524-XLOC_l2_014061 // Broad TUCP // linc-XRCC2-3 chr7:-:153108318-153111048 // chr7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr7:-:153108318-153111048	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00027524-XLOC_l2_014061	linc-XRCC2-3	chr7	153108318	153111048	-	NA	NA	NA	NA	LOC100288646	NA	chr1:327463-332097	Unknown
CUST_24043_PI429285431	2.5224607	A	2.2952104	A	1.17060171709753	0	lncRNA	25595-1_{1..453}	lnc-CLIC5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLIC5-1:2	chr6	 46097241	 46097693	-	lnc-CLIC5-1	lnc-CLIC5-1:2	ENSG00000231769.1	RP1-8B1.4	ENPP4	NA	chr6:46097701-46107328	inter
CUST_4448_PI429285431	7.3369446	P	6.7610226	P	1.49062979300488	0	lncRNA	4398-1_{1..560}	"transcript_id ""ENST00000536662.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536662.1"" | genecode_v17"	chr12	122237459	122238018	-	ENSG00000212694.4	ENST00000536662.1	AC084018.1	AC084018.1-008	SETD1B	NA	chr12:122242638-122250851	inter
CUST_1369_PI429285431	3.2773018	P	3.3726645	P	0.936036893980447	0	lncRNA	1357-1_{1..2084}	"transcript_id ""ENST00000484222.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000484222.1"" | genecode_v17"	chr3	 67346724	 67348807	+	ENSG00000241884.2	ENST00000484222.1	RP11-85I21.1	RP11-85I21.1-001	NA	NA	NA	inter
CUST_35012_PI429285431	2.469064	A	4.5678587	P	0.233453204983755	0	lncRNA	36426-1_{1..1340}	n341946|BC009864|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4427|NULL|-1.3544900|-0.1790785	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341946|BC009864|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4427|NULL|-1.3544900|-0.1790785	chr12	 64845370	 64846709	-	NA	NA	NA	NA	TBK1	NA	chr12:64845840-64856681	inner
CUST_31_PI429201921	0.89922255	A	0.9098977	A	0.992627858408962	0	lncRNA	32-1_{1..1097}	TC0X001786.hg.1	TCONS_l2_00030720-XLOC_l2_015573 // Broad TUCP // linc-PABPC5 chrX:+:90562779-90563877 // chrX // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrX:+:90562779-90563877	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00030720-XLOC_l2_015573	linc-PABPC5	chrX	 90562779	 90563877	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48599_PI429285431	0.8893087	A	0.89378923	A	0.996899150857455	0	lncRNA	52445-1_{1..338}	hg19_lincRNAsTranscripts_TCONS_l2_00013594 range=chr2:40981702-40984948 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013594 range=chr2:40981702-40984948 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 40981702	 40982039	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013625	0.89768803	A	0.8953523	A	1.00162031595967	0	lncRNA	THC2698180	NA	NA	NA	NA	XLOC_l2_015142	NA	NA	THC2698180	NA	"BROAD Institute lincRNA (XLOC_l2_015142), lincRNA [TCONS_l2_00029235]"	NA	NA	Agilent_HUMAN_G3V2	THC2698180	THC2698180	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22404_PI429285431	0.91269726	A	0.9012161	A	1.00798988379742	0	lncRNA	23993-1_{1..586}	lnc-RPRM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPRM-1:1	chr2	154449373	154449958	-	lnc-RPRM-1	lnc-RPRM-1:1	ENSG00000227400.2	AC012501.2	NA	NA	NA	inter
CUST_17971_PI429285431	1.0571353	A	1.1173322	A	0.95913320723979	0	lncRNA	19703-1_{1..615}	lnc-CADM1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CADM1-4:3	chr11	115951380	115951994	-	lnc-CADM1-4	lnc-CADM1-4:3	XLOC_009564	linc-CADM1-1	NA	NA	NA	inter
CUST_25632_PI429285431	1.2244321	A	1.91696	A	0.618768688855727	0	lncRNA	27162-1_{1..555}	lnc-SLC24A5-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC24A5-3:1	chr15	 47566982	 47567536	+	lnc-SLC24A5-3	lnc-SLC24A5-3:1	ENSG00000259554.1	RP11-408J6.1	SEMA6D	NA	chr15:47556982-47577361	inner
CUST_4451_PI429285431	1.1810005	A	0.8896999	A	1.22374299371213	0	lncRNA	4401-1_{1..816}	"transcript_id ""ENST00000538710.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000538710.1"" | genecode_v17"	chr12	122445340	122446155	-	ENSG00000255856.1	ENST00000538710.1	RP11-87C12.5	RP11-87C12.5-001	WDR66	NA	chr12:122435340-122441833	inter
LNCA_21_P0004727	0.8963896	A	0.8942717	A	1.00146909447728	0	lncRNA	ENST00000420389	NA	NA	NA	NA	XLOC_005601	NA	ENST00000420389	NA	NA	"BROAD Institute lincRNA (XLOC_005601), lincRNA [TCONS_00011446]"	chr6:10425001-10423688	hs|6p24.3	Agilent_HUMAN_G3V2	ENST00000420389	ENST00000420389	chr6	 10423688	 10425001	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35772_PI429285431	0.8856933	A	0.88455206	A	1.00079136024877	0	lncRNA	37189-1_{1..3000}	n344459|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_7|NULL|-1.2969800|-0.2712783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344459|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_7|NULL|-1.2969800|-0.2712783	chr5	133763647	133766646	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23113_PI429285431	1.759206	A	1.6088718	A	1.10982653337348	0	lncRNA	24684-1_{1..658}	lnc-ARHGAP28-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ARHGAP28-2:1	chr18	  6558577	  6559234	+	lnc-ARHGAP28-2	lnc-ARHGAP28-2:1	ENSG00000265174.1	CTD-2124B20.3	LOC100130480	NA	chr18:6548577-6568653	inner
CUST_9305_PI429285431	4.9798026	P	5.0127993	P	0.977388002071584	0	lncRNA	10812-1_{1..3000}	lnc-TPRA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPRA1-1:1	chr3	127255327	127258326	-	lnc-TPRA1-1	lnc-TPRA1-1:1	XLOC_003240	linc-TXNRD3-3	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60"	NA	inter
CUST_2298_PI429285431	0.8881903	A	0.9432971	A	0.962523186683402	0	lncRNA	2291-1_{1..572}	"transcript_id ""ENST00000513273.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513273.1"" | genecode_v17"	chr5	106150898	106151469	-	ENSG00000251027.1	ENST00000513273.1	CTC-254B4.1	CTC-254B4.1-001	NA	NA	NA	inter
CUST_10120_PI429285431	4.525338	P	4.5269494	P	0.998883686175612	0	lncRNA	11645-1_{1..382}	lnc-KLHL18-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL18-1:4	chr3	 47217207	 47217588	+	lnc-KLHL18-1	lnc-KLHL18-1:4	XLOC_002636	linc-KLHL18-3	NA	NA	NA	inter
CUST_18904_PI429285431	4.555442	P	4.431852	P	1.08944245918794	0	lncRNA	20595-1_{1..848}	lnc-RP3-377D14.1.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RP3-377D14.1.1-5:1	chr1	143169492	143170339	+	lnc-RP3-377D14.1.1-5	lnc-RP3-377D14.1.1-5:1	ENSG00000237291	BX571672.4	NA	NA	NA	inter
CUST_44030_PI429285431	0.91930646	A	0.92032236	A	0.999296079647527	0	lncRNA	48714-1_{1..3000}	"gi|387528001|ref|NR_048566.1| Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 1C (PPP1R1C), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387528001|ref|NR_048566.1| Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 1C (PPP1R1C), transcript variant 4, non-coding RNA"	Chr2	182850551	182853550	+	151242	NR_048566.1	NA	NA	NA	NA	NA	inter
CUST_35868_PI429285431	8.96766	P	9.043517	P	0.948778353434652	0	lncRNA	37261-1_{1..891}	n344534|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_82|NULL|-1.3098300|-0.2558777	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344534|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_82|NULL|-1.3098300|-0.2558777	chr6	139015529	139016419	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49411_PI429285431	4.2222147	P	4.579454	P	0.780656994198183	0	lncRNA	53217-2_{3001..4292}	hg19_lincRNAsTranscripts_TCONS_l2_00023261 range=chr5:175570100-175626411 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023261 range=chr5:175570100-175626411 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175573100	175574391	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30"	NA	inter
CUST_40895_PI429285431	0.89678854	A	0.9046279	A	0.994580906270313	0	lncRNA	41583-1_{1..3000}	n410718|NR_038120|lncRNA|Homosapiens||RefGeneNoncode|NR_038120||2.8910700|-0.2509502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410718|NR_038120|lncRNA|Homosapiens||RefGeneNoncode|NR_038120||2.8910700|-0.2509502	chr7	 36892510	 36895509	-	NA	NA	NA	NA	ELMO1	NA	chr7:36892511-37035871	inner
CUST_24369_PI429285431	5.3931866	P	5.66033	P	0.830963261979256	0	lncRNA	25922-1_{1..551}	lnc-MACC1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MACC1-1:3	chr7	 20179940	 20180490	-	lnc-MACC1-1	lnc-MACC1-1:3	ENSG00000243004.1	AC005062.2	MACC1	NA	chr7:20174278-20189997	inner
CUST_1061_PI429285431	0.91684437	A	0.947164	A	0.9792033304352	0	lncRNA	1051-1_{1..668}	"transcript_id ""ENST00000430692.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430692.1"" | genecode_v17"	chr2	126468546	126469213	+	ENSG00000235491.1	ENST00000430692.1	AC097499.1	AC097499.1-001	NA	NA	NA	inter
CUST_11396_PI429285431	2.3132086	A	2.9646595	A	0.63663973114398	0	lncRNA	12962-1_{1..227}	lnc-C15orf52-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf52-1:1	chr15	 40615444	 40615670	-	lnc-C15orf52-1	lnc-C15orf52-1:1	XLOC_011441	linc-PLCB2	C15orf52	NA	chr15:40623653-40625570	inter
CUST_17145_PI429285431	0.89641243	A	0.91032255	A	0.990404572283821	0	lncRNA	18854-1_{1..706}	lnc-PCF11-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCF11-1:8	chr11	 82784345	 82785050	+	lnc-PCF11-1	lnc-PCF11-1:8	XLOC_009233	linc-PCF11-2	RAB30	NA	chr11:82774345-82782884	inter
CUST_46991_PI429285431	0.91709334	A	0.9396577	A	0.984481253711286	0	lncRNA	51090-1_{1..1726}	"gi|84872133|ref|NR_002838.1| Homo sapiens keratoconus gene 6 (KC6), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|84872133|ref|NR_002838.1| Homo sapiens keratoconus gene 6 (KC6), non-coding RNA"	NA	NA	NA	NA	NA	NR_002838.1	NA	NA	NA	NA	NA	Unknown
CUST_28587_PI429285431	3.6543818	P	3.3498375	P	1.23502847056168	0	lncRNA	30267-1_{1..1963}	n325948|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048530|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048530|0.1702090|-0.1468986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325948|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048530|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048530|0.1702090|-0.1468986	chr10	 72359687	 72361649	+	NA	NA	NA	NA	PRF1	"hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_PRF1:range=chr10:72357809-723606585'pad=0,hg19_refFlat_PRF1:range=chr10:72357809-723606585'pad=0 3'pad=0 strand=- repeatMasking=none,-103.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50chr10:72357104-72362531"	NA	inner
CUST_19415_PI429285431	11.040113	P	11.026912	P	1.00919222731868	0	lncRNA	21076-1_{1..279}	lnc-WNT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WNT1-1:1	chr12	 49390044	 49390322	+	lnc-WNT1-1	lnc-WNT1-1:1	ENSG00000258283.1	RP11-386G11.3	PRKAG1	NA	chr12:49396055-49400117	inner
LNCA_21_P0001713	0.9100403	A	2.1158724	A	0.433519231534719	0	lncRNA	TCONS_00002232	NA	NA	NA	NA	XLOC_000566	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000566), lincRNA [TCONS_00002232]"	chr1:219414625-219419234	hs|1q41	Agilent_HUMAN_G3V2	TCONS_00002232	TCONS_00002232	chr1	219414625	219419234	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17514_PI429285431	0.8905834	A	0.9637552	A	0.950545900931166	0	lncRNA	19239-1_{1..418}	lnc-DHRS7B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHRS7B-1:3	chr17	 21133086	 21133503	+	lnc-DHRS7B-1	lnc-DHRS7B-1:3	XLOC_012143	linc-MAP2K3-2	C17orf103	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80chr17:21142183-21143235"	NA	inter
CUST_34372_PI429285431	6.25493	P	6.87632	P	0.650044324728026	0	lncRNA	35858-1_{1..1475}	n341239|BC047792|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3707|NULL|-1.0652100|-0.1731854	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341239|BC047792|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3707|NULL|-1.0652100|-0.1731854	chr7	 44924551	 44926025	+	NA	NA	NA	NA	PURB	"hg19_refFlat_PURB:range=chr7:44924009-449249475'pad=0,hg19_refFlat_PURB:range=chr7:44924009-449249475'pad=0 3'pad=0 strand=- repeatMasking=none,-106.50chr7:44915892-44924960"	NA	inner
CUST_25629_PI429285431	0.8938206	A	1.706088	A	0.5694861259668	0	lncRNA	27159-1_{1..286}	lnc-WWC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-WWC2-1:1	chr4	183111370	183111655	+	lnc-WWC2-1	lnc-WWC2-1:1	ENSG00000248266.1	RP11-402C9.1	NA	NA	NA	inter
CUST_30947_PI429285431	1.1996846	A	0.9060948	A	1.22568631237341	0	lncRNA	32735-1_{1..269}	n337046|DQ123826|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341910_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341910_08|-1.3446800|-0.1737685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337046|DQ123826|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341910_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341910_08|-1.3446800|-0.1737685	chr6	  2871551	  2871819	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20"	NA	inter
CUST_41682_PI429285431	3.2490554	P	3.1990433	A	1.03527360672844	0	lncRNA	43143-1_{1..78}	ENST00000585135 ncrna:miRNA supercontig:GRCh37:GL000220.1:100714:100791:1 gene:ENSG00000263806 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585135 ncrna:miRNA supercontig:GRCh37:GL000220.1:100714:100791:1 gene:ENSG00000263806 gene_biotype:miRNA transcript_biotype:miRNA	chrGL000220.1	   100714	   100791	+	ENSG00000263806	ENST00000585135	NA	NA	NA	NA	NA	Unknown
CUST_49700_PI429285431	5.913111	P	6.028021	P	0.923439916112255	0	lncRNA	53477-1_{1..282}	hg19_lincRNAsTranscripts_TCONS_l2_00026389 range=chr7:16625596-16626306 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026389 range=chr7:16625596-16626306 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 16625596	 16625877	-	NA	NA	NA	NA	LOC100506049	NA	chr7:16615596-16621114	inter
CUST_50253_PI429285431	2.5482178	P	1.956338	A	1.50720932923578	0	lncRNA	53976-1_{1..2026}	hg19_lincRNAsTranscripts_TCONS_l2_00029353 range=chr9:68427732-68438938 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029353 range=chr9:68427732-68438938 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 68427732	 68429757	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8136_PI429285431	0.92162687	A	0.9561214	A	0.976373788160653	0	lncRNA	9739-1_{1..553}	lnc-C4orf39-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C4orf39-1:4	chr4	165819878	165820430	+	lnc-C4orf39-1	lnc-C4orf39-1:4	ENSG00000248329	RP11-366M4.3	NA	NA	NA	inter
CUST_40260_PI429285431	7.500418	P	8.223417	P	0.605836750149011	0	lncRNA	41071-1_{1..2084}	n408189|NR_028330|lncRNA|Homosapiens||RefGeneNoncode|NR_028330||1.1007100|-0.1527599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408189|NR_028330|lncRNA|Homosapiens||RefGeneNoncode|NR_028330||1.1007100|-0.1527599	chr15	 80215112	 80217195	+	NA	NA	NA	NA	ST20	NA	chr15:80205112-80216096	inter
CUST_33517_PI429285431	1.7228914	A	2.1084301	A	0.765493111283216	0	lncRNA	35086-1_{1..3000}	n340254|BX537573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2715|NULL|-0.8829010|-0.3407828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340254|BX537573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2715|NULL|-0.8829010|-0.3407828	chr4	148407980	148410979	+	NA	NA	NA	NA	EDNRA	NA	chr4:148397980-148423807	inter
CUST_40315_PI429285431	0.90981764	A	0.9157811	A	0.995874975896066	0	lncRNA	41118-1_{1..608}	n408351|NR_029429|lncRNA|Homosapiens||RefGeneNoncode|NR_029429||2.3006500|-0.1791131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408351|NR_029429|lncRNA|Homosapiens||RefGeneNoncode|NR_029429||2.3006500|-0.1791131	chr1	111927140	111927747	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003762	6.122512	P	6.530252	P	0.75380329166152	0	lncRNA	TCONS_00008561	NA	NA	NA	NA	XLOC_004054	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004054), lincRNA [TCONS_00008561]"	chr4:120040913-120040854	hs|4q26	Agilent_HUMAN_G3V2	TCONS_00008561	TCONS_00008561	chr4	120040854	120040913	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010229	0.9020625	A	0.90979093	A	0.994657383348665	0	lncRNA	TCONS_00028991	NA	NA	NA	NA	XLOC_013909	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013909), lincRNA [TCONS_00028991]"	chr21:31456148-31456207	hs|21q21.3	Agilent_HUMAN_G3V2	TCONS_00028991	TCONS_00028991	chr21	 31456148	 31456207	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20236_PI429285431	0.91792	A	0.92859197	A	0.992630046369673	0	lncRNA	21879-1_{1..812}	lnc-KRR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KRR1-1:1	chr12	 75883556	 75884367	-	lnc-KRR1-1	lnc-KRR1-1:1	ENSG00000257497.1	RP11-585P4.5	GLIPR1	NA	chr12:75874513-75893600	inner
CUST_44912_PI429285431	0.9169972	A	0.92833996	A	0.992168624156911	0	lncRNA	49428-2_{3001..4544}	"gi|384081588|ref|NR_047565.1| Homo sapiens coiled-coil domain containing 129 (CCDC129), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384081588|ref|NR_047565.1| Homo sapiens coiled-coil domain containing 129 (CCDC129), transcript variant 4, non-coding RNA"	Chr7	 31559978	 31561521	+	223075	NR_047565.1	NA	NA	NA	NA	NA	inter
CUST_41241_PI429285431	1.0783288	A	0.9171741	A	1.11818174701959	0	lncRNA	42164-1_{1..97}	ENST00000384896 ncrna:miRNA chromosome:GRCh37:X:8095006:8095102:1 gene:ENSG00000207628 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384896 ncrna:miRNA chromosome:GRCh37:X:8095006:8095102:1 gene:ENSG00000207628 gene_biotype:miRNA transcript_biotype:miRNA	chrX	  8095006	  8095102	+	ENSG00000207628	ENST00000384896	NA	NA	NA	NA	NA	inter
CUST_3705_PI429285431	2.8117442	A	3.1781595	A	0.775707523842672	0	lncRNA	3673-1_{1..696}	"transcript_id ""ENST00000417931.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000417931.1"" | genecode_v17"	chr10	 62776033	 62776728	+	ENSG00000227244.2	ENST00000417931.1	LINC00845	LINC00845-002	NA	NA	NA	inter
CUST_49480_PI429285431	0.8964201	A	1.2056557	A	0.807069264912182	0	lncRNA	53274-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00024567 range=chr6:2851295-2866568 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024567 range=chr6:2851295-2866568 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	  2851295	  2854294	-	NA	NA	NA	NA	SERPINB1	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80chr6:2841295-2842081"	NA	inter
CUST_28775_PI429285431	0.883447	A	0.8866526	A	0.997780514107371	0	lncRNA	30482-1_{1..2270}	n326180|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092700|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092700|-0.4591230|-0.3208159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n326180|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092700|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092700|-0.4591230|-0.3208159	chr1	232831679	232833948	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10"	NA	inter
LNCA_21_P0006679	5.143654	P	5.5000253	P	0.781126819168356	0	lncRNA	ENST00000425541	NA	NA	NA	NA	XLOC_008475	NA	ENST00000425541	NA	NA	"BROAD Institute lincRNA (XLOC_008475), lincRNA [TCONS_00017823]"	chr10:45451113-45451172	hs|10q11.21	Agilent_HUMAN_G3V2	ENST00000425541	ENST00000425541	chr10	 45451113	 45451172	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24991_PI429285431	1.1211591	A	0.9082703	A	1.15900661458854	0	lncRNA	26531-1_{1..579}	lnc-CNBD1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CNBD1-4:3	chr8	 89721559	 89722137	+	lnc-CNBD1-4	lnc-CNBD1-4:3	ENSG00000253553.1	RP11-586K2.1	NA	NA	NA	inter
LNCA_21_P0006532	4.539928	P	5.1985846	P	0.633467891216107	0	lncRNA	TCONS_00017313	NA	NA	NA	NA	XLOC_008149	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008149), lincRNA [TCONS_00017313]"	chrX:45629208-45629149	hs|Xp11.3	Agilent_HUMAN_G3V2	TCONS_00017313	TCONS_00017313	chrX	 45629149	 45629208	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43754_PI429285431	5.238269	P	5.855814	P	0.651779101645422	0	lncRNA	48492-1_{1..2281}	"gi|299890837|ref|NR_033927.1| Homo sapiens long intergenic non-protein coding RNA 184 (LINC00184), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|299890837|ref|NR_033927.1| Homo sapiens long intergenic non-protein coding RNA 184 (LINC00184), non-coding RNA"	Chr1	234765057	234767337	+	100302691	NR_033927.1	NA	NA	NA	NA	NA	inter
CUST_35057_PI429285431	3.4421554	P	3.7891707	P	0.786208954230764	0	lncRNA	36467-1_{1..1898}	n342004|AK097464|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4485|NULL|-1.0600900|-0.3125550	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342004|AK097464|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4485|NULL|-1.0600900|-0.3125550	chr12	103321660	103323557	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011478	3.143085	P	2.9693253	P	1.12799423940227	0	lncRNA	XR_110606	XR_110606	XR_110606	NA	NA	LOC728034	"BMS1 homolog, ribosome assembly protein (yeast) pseudogene"	NA	THC2530054	NA	"PREDICTED: Homo sapiens hypothetical LOC728034, transcript variant 1 (LOC728034), miscRNA [XR_110606]"	chr9:42812432-42812491	hs|9p12	Agilent_HUMAN_G3V2	XR_110606	XR_110606	chr9	 42812432	 42812491	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42024_PI429285431	2.6212666	A	2.420442	A	1.14935510322738	0	lncRNA	43894-1_{1..99}	ENST00000385238 ncrna:miRNA chromosome:GRCh37:7:5535450:5535548:-1 gene:ENSG00000207973 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385238 ncrna:miRNA chromosome:GRCh37:7:5535450:5535548:-1 gene:ENSG00000207973 gene_biotype:miRNA transcript_biotype:miRNA	chr7	  5535450	  5535548	-	ENSG00000207973	ENST00000385238	NA	NA	FBXL18	NA	chr7:5525450-5545548	inner
CUST_33586_PI429285431	3.084398	A	3.3010862	P	0.860538592947973	0	lncRNA	35151-1_{1..364}	n340339|AF009269|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2800|NULL|-0.8068910|-0.1463494	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340339|AF009269|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2800|NULL|-0.8068910|-0.1463494	chr5	  9374800	  9375163	+	NA	NA	NA	NA	SEMA5A	NA	chr5:9364800-9385164	inner
LNCA_21_P0013314	0.8872713	A	0.8865289	A	1.00051472489227	0	lncRNA	TCONS_l2_00026608	NA	NA	NA	NA	XLOC_l2_013859	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013859), lincRNA [TCONS_l2_00026608]"	chr7:62834434-62834375	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00026608	TCONS_l2_00026608	chr7	 62834375	 62834434	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6228_PI429285431	11.015816	P	11.245467	P	0.852841176231394	0	lncRNA	6154-1_{1..566}	"transcript_id ""ENST00000590968.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590968.1"" | genecode_v17"	chr18	 59259608	 59260173	-	ENSG00000267175.1	ENST00000590968.1	RP11-879F14.1	RP11-879F14.1-002	NA	NA	NA	inter
LNCA_21_P0012026	1.1057012	A	1.201098	A	0.936014769775427	0	lncRNA	ENST00000432608	NA	NA	NA	NA	XLOC_l2_007586	NA	ENST00000432608	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007586), lincRNA [TCONS_l2_00015503]"	chr2:145525888-145525947	hs|2q22.3	Agilent_HUMAN_G3V2	ENST00000432608	ENST00000432608	chr2	145525888	145525947	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1543_PI429285431	0.9015925	A	0.91050845	A	0.993838991722205	0	lncRNA	1530-1_{1..457}	"transcript_id ""ENST00000463642.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000463642.1"" | genecode_v17"	chr3	167582561	167583017	+	ENSG00000242924.1	ENST00000463642.1	RP11-298O21.6	RP11-298O21.6-001	NA	NA	NA	inter
CUST_26410_PI429285431	4.327769	P	3.5316162	P	1.73646435942028	0	lncRNA	27917-1_{1..456}	lnc-LMOD1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LMOD1-3:3	chr1	201798079	201798534	-	lnc-LMOD1-3	lnc-LMOD1-3:3	ENSG00000231871.1	IPO9-AS1	NAV1	NA	chr1:201788079-201796102	inter
CUST_43852_PI429285431	9.090939	P	9.135885	P	0.969326098081265	0	lncRNA	48574-1_{1..1771}	"gi|300360497|ref|NR_034023.1| Homo sapiens uncharacterized LOC339807 (LOC339807), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300360497|ref|NR_034023.1| Homo sapiens uncharacterized LOC339807 (LOC339807), non-coding RNA"	Chr2	 64834446	 64836216	+	339807	NR_034023.1	NA	NA	NA	NA	NA	inter
CUST_30278_PI429285431	2.397346	A	3.3293712	P	0.524122082676162	0	lncRNA	32054-1_{1..420}	n335174|AY425955|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254570|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254570|1.4105400|-0.2773186	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335174|AY425955|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254570|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254570|1.4105400|-0.2773186	chr15	 40993329	 40993748	+	NA	NA	NA	NA	RAD51	NA	chr15:40987327-41021025	inner
CUST_50997_PI429285431	5.1842294	P	5.7098045	P	0.694682134314292	0	lncRNA	54642-1_{1..1698}	hg19_lincRNAsTranscripts_TCONS_l2_00006564 range=chr12:133697047-133705047 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006564 range=chr12:133697047-133705047 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	133697047	133698744	-	NA	NA	NA	NA	ZNF10	NA	chr12:133702065-133715047	inter
CUST_25408_PI429285431	1.2028935	A	1.3602911	A	0.896641015541	0	lncRNA	26939-1_{1..456}	lnc-FAM78A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM78A-3:1	chr9	134042465	134042920	-	lnc-FAM78A-3	lnc-FAM78A-3:1	ENSG00000236986.1	RP11-544A12.4	NUP214	"hg19_refFlat_NUP214:range=chr9:134001092-1341088745'pad=0,hg19_refFlat_NUP214:range=chr9:134001092-1341088745'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00chr9:134032465-134052795"	NA	inner
CUST_47337_PI429285431	0.9172621	A	1.3807362	A	0.725237736345986	0	lncRNA	51390-2_{3001..5568}	"gi|375268720|ref|NR_046317.1| Homo sapiens cholinergic receptor, nicotinic, alpha 4 (neuronal) (CHRNA4), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375268720|ref|NR_046317.1| Homo sapiens cholinergic receptor, nicotinic, alpha 4 (neuronal) (CHRNA4), transcript variant 3, non-coding RNA"	Chr20	 61977662	 61980229	-	1137	NR_046317.1	NA	NA	NA	NA	NA	inter
CUST_28504_PI429285431	6.9354196	P	6.992399	P	0.961274654169983	0	lncRNA	30172-1_{1..297}	n325848|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051030|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051030|-0.8976510|-0.2315353	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325848|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051030|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051030|-0.8976510|-0.2315353	chr10	132127320	132127616	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21741_PI429285431	2.0498998	A	2.3383806	A	0.818763786938432	0	lncRNA	23351-1_{1..365}	lnc-ZNF800-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF800-1:1	chr7	126730963	126731327	-	lnc-ZNF800-1	lnc-ZNF800-1:1	ENSG00000230206.1	AC000364.1	GRM8	NA	chr7:126720963-126740972	inter
CUST_10057_PI429285431	1.1261873	A	1.0043507	A	1.08811919404022	0	lncRNA	11583-1_{1..3000}	lnc-FAM22B-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM22B-1:6	chr10	 81436224	 81439223	+	lnc-FAM22B-1	lnc-FAM22B-1:6	XLOC_008528	linc-C10orf57-5	NA	NA	NA	inter
CUST_31227_PI429285431	2.3912635	A	3.016106	A	0.64849056961828	0	lncRNA	33018-2_{3001..4163}	n337676|CR749394|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|58|NULL|-0.8382520|-0.3061281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337676|CR749394|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|58|NULL|-0.8382520|-0.3061281	chr15	 27610455	 27611617	+	NA	NA	NA	NA	GABRG3	NA	chr15:27597455-27621544	inner
CUST_38096_PI429285431	2.2201815	A	3.1279361	P	0.533014025112645	0	lncRNA	39172-1_{1..649}	n381117|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001chr.2||-1.0738800|-0.2909232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n381117|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001chr.2||-1.0738800|-0.2909232	chr1	 43144356	 43145004	+	NA	NA	NA	NA	YBX1	NA	chr1:43148066-43157329	inter
LNCA_21_P0002569	10.222862	P	11.471685	P	0.420791363627392	0	lncRNA	TCONS_00004684	NA	NA	NA	NA	XLOC_001329	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001329), lincRNA [TCONS_00004684]"	chr2:7215320-7215379	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_00004684	TCONS_00004684	chr2	  7215320	  7215379	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1920_PI429285431	2.6321907	A	2.6768625	A	0.969510346635697	0	lncRNA	1911-1_{1..718}	"transcript_id ""ENST00000513400.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513400.1"" | genecode_v17"	chr4	139694742	139695459	+	ENSG00000250501.2	ENST00000513400.1	RP11-98O2.1	RP11-98O2.1-003	NA	NA	NA	inter
CUST_13513_PI429285431	1.4828918	A	2.3256764	A	0.557566349981682	0	lncRNA	15153-1_{1..461}	lnc-NLGN1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NLGN1-1:6	chr3	174308735	174309195	+	lnc-NLGN1-1	lnc-NLGN1-1:6	XLOC_002925	linc-NAALADL2	NA	NA	NA	inter
CUST_5775_PI429285431	3.3944447	P	3.9156423	P	0.696793175915114	0	lncRNA	5698-1_{1..750}	"transcript_id ""ENST00000456235.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456235.1"" | genecode_v17"	chr17	 20978869	 20979618	+	ENSG00000236819.1	ENST00000456235.1	AC087393.1	AC087393.1-001	NA	NA	NA	inter
CUST_8798_PI429285431	2.3551345	A	2.0929744	A	1.19927299316518	0	lncRNA	10339-1_{1..2366}	lnc-ZNF613-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF613-2:1	chr19	 52569769	 52572134	+	lnc-ZNF613-2	lnc-ZNF613-2:1	ENSG00000245697	ENST00000377305	ZNF841	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_ZNF841:range=chr19:52568360-525880545'pad=0,hg19_refFlat_ZNF841:range=chr19:52568360-525880545'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90chr19:52566442-52580821"	NA	inner
CUST_303_PI429285431	1.0891495	A	1.2070992	A	0.921496313886995	0	lncRNA	295-1_{1..255}	"transcript_id ""ENST00000426794.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426794.1"" | genecode_v17"	chr1	 86064814	 86065068	+	ENSG00000230285.1	ENST00000426794.1	RP11-290M5.2	RP11-290M5.2-001	NA	NA	NA	inter
CUST_15626_PI429285431	0.89178675	A	0.89176023	A	1.00001838243218	0	lncRNA	17314-1_{1..315}	lnc-EFR3A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFR3A-2:1	chr8	132142126	132142440	+	lnc-EFR3A-2	lnc-EFR3A-2:1	XLOC_006928	linc-EFR3A-1	NA	NA	NA	inter
LNCA_21_P0003985	4.2184787	P	4.527677	P	0.807090131465326	0	lncRNA	XR_108570	XR_108570	XR_108570	NA	Hs.116864	LOC100506406	uncharacterized LOC100506406	ENST00000503269	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506406 (LOC100506406), miscRNA [XR_108570]"	chr5:35940036-35940095	hs|5p13.2	Agilent_HUMAN_G3V2	XR_108570	XR_108570	chr5	 35940036	 35940095	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47271_PI429285431	9.195223	P	8.77228	P	1.34065962189103	0	lncRNA	51341-1_{1..2804}	"gi|335334957|ref|NR_038370.1| Homo sapiens NDRG family member 3 (NDRG3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|335334957|ref|NR_038370.1| Homo sapiens NDRG family member 3 (NDRG3), transcript variant 3, non-coding RNA"	Chr20	 35280169	 35282972	-	57446	NR_038370.1	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40"	NA	inter
CUST_2151_PI429285431	0.9011005	A	0.9077596	A	0.995394899750312	0	lncRNA	2142-1_{1..563}	"transcript_id ""ENST00000510987.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510987.1"" | genecode_v17"	chr5	 45890318	 45890880	+	ENSG00000250122.1	ENST00000510987.1	CTD-2013M15.1	CTD-2013M15.1-001	NA	NA	NA	inter
CUST_3738_PI429285431	9.3392105	P	9.097074	P	1.1827428996851	0	lncRNA	3707-1_{1..804}	"transcript_id ""ENST00000461034.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000461034.1"" | genecode_v17"	chr10	 80027136	 80027939	+	ENSG00000227136.2	ENST00000461034.1	LINC00595	LINC00595-002	NA	NA	NA	inter
CUST_2045_PI429285431	1.3448787	A	1.0820594	A	1.19982109333516	0	lncRNA	2037-1_{1..559}	"transcript_id ""ENST00000513859.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513859.1"" | genecode_v17"	chr5	  4012822	  4013380	-	ENSG00000248962.1	ENST00000513859.1	CTD-2287N17.1	CTD-2287N17.1-001	NA	NA	NA	inter
LNCA_21_P0013065	10.018613	P	9.934517	P	1.06002331725919	0	lncRNA	TCONS_l2_00024643	NA	NA	NA	NA	XLOC_l2_012902	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012902), lincRNA [TCONS_l2_00024643]"	chr6:20043060-20043001	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_l2_00024643	TCONS_l2_00024643	chr6	 20043001	 20043060	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4897_PI429285431	0.8897821	A	0.90379757	A	0.990332252556335	0	lncRNA	4839-1_{1..520}	"transcript_id ""ENST00000555465.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555465.1"" | genecode_v17"	chr14	 76747286	 76747805	-	ENSG00000258402.1	ENST00000555465.1	RP11-516J2.1	RP11-516J2.1-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_15785_PI429285431	1.9435277	A	1.1063002	A	1.78661341532006	0	lncRNA	17475-1_{1..1375}	lnc-FOXL1-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXL1-3:6	chr16	 86775011	 86776385	+	lnc-FOXL1-3	lnc-FOXL1-3:6	XLOC_011816	linc-MAP1LC3B-5	NA	"hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0,hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0 3'pad=0 strand=- repeatMasking=none,-58.40"	NA	inter
CUST_6212_PI429285431	1.3562338	A	1.5661399	A	0.864593502859121	0	lncRNA	6138-1_{1..281}	"transcript_id ""ENST00000585702.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585702.1"" | genecode_v17"	chr18	 55628463	 55628743	-	ENSG00000267209.1	ENST00000585702.1	RP11-693L9.2	RP11-693L9.2-003	NA	NA	NA	inter
CUST_27161_PI429285431	1.792656	A	0.9128084	A	1.84018090231269	0	lncRNA	28697-1_{1..694}	n324286|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043247|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043247|0.2666580|-0.3711005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324286|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043247|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043247|0.2666580|-0.3711005	chr6	169951338	169952031	-	NA	NA	NA	NA	WDR27	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90chr6:169941338-169962123"	NA	inner
CUST_47831_PI429285431	5.7219915	P	4.7655644	P	1.94049820688045	0	lncRNA	51739-6_{15001..18000}	"gi|410170958|ref|XR_171122.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410170958|ref|XR_171122.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	XR_171122.1	NA	NA	NA	NA	NA	Unknown
CUST_16994_PI429285431	2.6308136	A	2.1119523	A	1.43282389275861	0	lncRNA	18704-1_{1..1046}	lnc-CCDC43-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC43-1:1	chr17	 42724653	 42725698	-	lnc-CCDC43-1	lnc-CCDC43-1:1	XLOC_012488	linc-GPATCH8	C17orf104	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70chr17:42733762-42735050"	NA	inter
CUST_26510_PI429285431	0.8911134	A	0.90201557	A	0.992471672492395	0	lncRNA	28018-1_{1..1432}	lnc-KRTAP5-6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-KRTAP5-6-2:1	chr11	  1687932	  1689363	+	lnc-KRTAP5-6-2	lnc-KRTAP5-6-2:1	ENSG00000205866.2	FAM99A	NA	NA	NA	inner
CUST_40854_PI429285431	3.877377	P	4.534566	P	0.634112622413156	0	lncRNA	41556-1_{1..3000}	n410631|NR_037870|lncRNA|Homosapiens||RefGeneNoncode|NR_037870||5.2329800|-0.1876705	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410631|NR_037870|lncRNA|Homosapiens||RefGeneNoncode|NR_037870||5.2329800|-0.1876705	chr1	159165774	159168773	-	NA	NA	NA	NA	CADM3	"hg19_refFlat_CADM3:range=chr1:159141556-1591707125'pad=0,hg19_refFlat_CADM3:range=chr1:159141556-1591707125'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.70chr1:159155774-159172932"	NA	inter
LNCA_21_P0002544	0.9100281	A	0.9239048	A	0.990427515250451	0	lncRNA	TCONS_00004593	NA	NA	NA	NA	XLOC_002497	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002497), lincRNA [TCONS_00004593]"	chr2:221618357-221618298	hs|2q36.1	Agilent_HUMAN_G3V2	TCONS_00004593	TCONS_00004593	chr2	221618298	221618357	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7303_PI429285431	2.1124046	A	1.892946	A	1.16429657903408	0	lncRNA	8393-1_{1..126}	"transcript_id ""ENST00000411366.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411366.1"" | genecode_v17"	chr13	 95963084	 95963209	-	ENSG00000223298.1	ENST00000411366.1	RNY3P8	RNY3P8-201	ABCC4	NA	chr13:95953084-95953687	inter
CUST_48435_PI429285431	0.9184685	A	0.9122511	A	1.0043188728456	0	lncRNA	52287-1_{1..277}	hg19_lincRNAsTranscripts_TCONS_l2_00001567 range=chr1:157606100-157609826 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001567 range=chr1:157606100-157609826 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	157606100	157606376	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42300_PI429285431	6.842271	P	7.354331	P	0.701220461775604	0	lncRNA	44916-1_{1..74}	ENST00000363497 ncrna:snoRNA chromosome:GRCh37:14:101409788:101409861:1 gene:ENSG00000200367 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363497 ncrna:snoRNA chromosome:GRCh37:14:101409788:101409861:1 gene:ENSG00000200367 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101409788	101409861	+	ENSG00000200367	ENST00000363497	NA	NA	NA	NA	NA	inter
CUST_50943_PI429285431	4.9027705	P	5.622199	P	0.607337981540877	0	lncRNA	54585-1_{1..771}	hg19_lincRNAsTranscripts_TCONS_l2_00006254 range=chr12:54472673-54475624 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006254 range=chr12:54472673-54475624 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 54472673	 54473443	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_145_PI429285431	0.8973484	A	1.6934772	A	0.575892404727823	0	lncRNA	135-2_{3001..3242}	"transcript_id ""ENST00000412674.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000412674.1"" | genecode_v17"	chr1	  4003677	  4003918	+	ENSG00000233304.1	ENST00000412674.1	RP13-614K11.1	RP13-614K11.1-001	NA	NA	NA	inter
LNCA_33_P3358676	0.9072572	A	0.917707	A	0.992782919702325	0	lncRNA	XR_132891	XR_132891	XR_132891	   403323	NA	FLJ20444	uncharacterized protein FLJ20444	NA	THC2549400	NA	"PREDICTED: Homo sapiens hypothetical protein FLJ20444 (FLJ20444), miscRNA [XR_132891]"	chr9:66523768-66523709	hs|9q13	Agilent_HUMAN_G3V2	XR_132891	XR_132891	chr9	 66523709	 66523768	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18786_PI429285431	9.904052	P	9.778836	P	1.09067101547811	0	lncRNA	20482-1_{1..1422}	lnc-MGAT1-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MGAT1-2:9	chr5	180257672	180259093	-	lnc-MGAT1-2	lnc-MGAT1-2:9	ENSG00000249705	AC022413.1	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10"	NA	inter
CUST_9324_PI429285431	8.818567	P	8.674235	P	1.10521879386194	0	lncRNA	10832-1_{1..539}	lnc-LCLAT1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LCLAT1-2:3	chr2	 31057943	 31058481	+	lnc-LCLAT1-2	lnc-LCLAT1-2:3	XLOC_001414	linc-EHD3-1	NA	NA	NA	inter
CUST_36205_PI429285431	2.3207173	A	2.5132532	A	0.875066219340671	0	lncRNA	37461-2_{3001..4655}	n344750|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_299|NULL|-1.2893800|-0.2058152	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344750|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_299|NULL|-1.2893800|-0.2058152	chr10	131860147	131861801	-	NA	NA	NA	NA	NA	"hg19_refFlat_CTAGE6P:range=chr7:143452418-1434547515'pad=0,hg19_refFlat_CTAGE6P:range=chr7:143452418-1434547515'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CTAGE9:range=chr6:132029824-1320321575'pad=0,hg19_refFlat_CTAGE9:range=chr6:132029824-1320321575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CTAGE4:range=chr7:143880597-1438829305'pad=0,hg19_refFlat_CTAGE4:range=chr7:143880597-1438829305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_CTAGE5:range=chr14:39736664-398194685'pad=0,hg19_refFlat_CTAGE5:range=chr14:39736664-398194685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CTAGE15P:range=chr7:143268911-1432712445'pad=0,hg19_refFlat_CTAGE15P:range=chr7:143268911-1432712445'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CTAGE4:range=chr7:143964010-1439663435'pad=0,hg19_refFlat_CTAGE4:range=chr7:143964010-1439663435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CTAGE5:range=chr14:39746162-398194685'pad=0,hg19_refFlat_CTAGE5:range=chr14:39746162-398194685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CTAGE5:range=chr14:39748676-398194685'pad=0,hg19_refFlat_CTAGE5:range=chr14:39748676-398194685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CTAGE1:range=chr18:19995537-199977745'pad=0,hg19_refFlat_CTAGE1:range=chr18:19995537-199977745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_CTAGE5:range=chr14:39734599-398194685'pad=0,hg19_refFlat_CTAGE5:range=chr14:39734599-398194685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40"	NA	inter
CUST_1830_PI429285431	0.8998813	A	0.9057692	A	0.995927135418082	0	lncRNA	1819-1_{1..567}	"transcript_id ""ENST00000514327.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514327.1"" | genecode_v17"	chr4	105151537	105152103	+	ENSG00000251170.1	ENST00000514327.1	RP11-729M20.1	RP11-729M20.1-001	NA	NA	NA	inter
CUST_26925_PI429285431	0.90174973	A	0.9067116	A	0.996566601438099	0	lncRNA	28444-1_{1..371}	n324002|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053531|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053531|-0.9678330|-0.3923108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324002|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053531|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053531|-0.9678330|-0.3923108	chr9	108386243	108386613	-	NA	NA	NA	NA	FKTN	NA	chr9:108376243-108403399	inner
CUST_43992_PI429285431	0.8918377	A	1.8077497	A	0.53000871962905	0	lncRNA	48690-2_{3001..6000}	"gi|363001194|ref|NR_045628.1| Homo sapiens sodium channel, voltage-gated, type VII, alpha subunit (SCN7A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|363001194|ref|NR_045628.1| Homo sapiens sodium channel, voltage-gated, type VII, alpha subunit (SCN7A), transcript variant 2, non-coding RNA"	Chr2	167263083	167266082	-	6332	NR_045628.1	NA	NA	NA	NA	NA	inter
CUST_23674_PI429285431	0.8961752	A	1.5466646	A	0.63706416812446	0	lncRNA	25239-1_{1..666}	lnc-TLE2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TLE2-1:1	chr19	  2917003	  2917668	-	lnc-TLE2-1	lnc-TLE2-1:1	ENSG00000253392.1	AC006277.2	ZNF57	"hg19_refFlat_ZNF3:range=chr7:99662411-996749805'pad=0,hg19_refFlat_ZNF3:range=chr7:99662411-996749805'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF77:range=chr19:2933487-29448385'pad=0,hg19_refFlat_ZNF77:range=chr19:2933487-29448385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF559:range=chr19:9434855-94537445'pad=0,hg19_refFlat_ZNF559:range=chr19:9434855-94537445'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF101:range=chr19:19779773-197911095'pad=0,hg19_refFlat_ZNF101:range=chr19:19779773-197911095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF3:range=chr7:99668766-996749805'pad=0,hg19_refFlat_ZNF3:range=chr7:99668766-996749805'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF57:range=chr19:2901044-29182875'pad=0,hg19_refFlat_ZNF57:range=chr19:2901044-29182875'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_ZNF699:range=chr19:9406151-94157955'pad=0,hg19_refFlat_ZNF699:range=chr19:9406151-94157955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF559:range=chr19:9449226-94537445'pad=0,hg19_refFlat_ZNF559:range=chr19:9449226-94537445'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF625:range=chr19:12256112-122673735'pad=0,hg19_refFlat_ZNF625:range=chr19:12256112-122673735'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ZNF559:range=chr19:9434855-94523045'pad=0,hg19_refFlat_ZNF559:range=chr19:9434855-94523045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF559:range=chr19:9449226-94523045'pad=0,hg19_refFlat_ZNF559:range=chr19:9449226-94523045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF555:range=chr19:2841571-28539505'pad=0,hg19_refFlat_ZNF555:range=chr19:2841571-28539505'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_ZNF490:range=chr19:12691299-127214945'pad=0,hg19_refFlat_ZNF490:range=chr19:12691299-127214945'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF564:range=chr19:12637260-126621465'pad=0,hg19_refFlat_ZNF564:range=chr19:12637260-126621465'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF20:range=chr19:12243402-122509975'pad=0,hg19_refFlat_ZNF20:range=chr19:12243402-122509975'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF559:range=chr19:9448666-94523045'pad=0,hg19_refFlat_ZNF559:range=chr19:9448666-94523045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF556:range=chr19:2867420-28783275'pad=0,hg19_refFlat_ZNF556:range=chr19:2867420-28783275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF627:range=chr19:11708443-117287045'pad=0,hg19_refFlat_ZNF627:range=chr19:11708443-117287045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90chr19:2907003-2918474"	NA	inner
CUST_33753_PI429285431	1.0393585	A	0.9140491	A	1.09074162774717	0	lncRNA	35308-2_{3001..3711}	n340532|AF181250|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2994|NULL|10.4430000|-0.1014007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340532|AF181250|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2994|NULL|10.4430000|-0.1014007	chr5	 80259557	 80260267	+	NA	NA	NA	NA	RASGRF2	NA	chr5:80256558-80521953	inter
LNCA_19_P00315631	0.9003208	A	0.90735286	A	0.995137607329299	0	lncRNA	ENST00000457921	NA	NA	NA	NA	XLOC_l2_013734	NA	ENST00000457921	THC2532253	NA	"BROAD Institute lincRNA (XLOC_l2_013734), lincRNA [TCONS_l2_00027285]"	chr7:19958663-19958604	hs|7p21.1	Agilent_HUMAN_G3V2	ENST00000457921	ENST00000457921	chr7	 19958604	 19958663	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40061_PI429285431	0.9065472	A	0.9085198	A	0.998633632203296	0	lncRNA	40911-1_{1..2430}	n407277|NR_026751|lncRNA|Homosapiens||RefGeneNoncode|NR_026751||-1.2639400|-0.3165801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407277|NR_026751|lncRNA|Homosapiens||RefGeneNoncode|NR_026751||-1.2639400|-0.3165801	chr6	  1208638	  1211067	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10167_PI429285431	5.7438483	P	5.9175873	P	0.886542070267565	0	lncRNA	11692-1_{1..301}	lnc-PMFBP1-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PMFBP1-4:7	chr16	 72461289	 72461589	-	lnc-PMFBP1-4	lnc-PMFBP1-4:7	XLOC_012004	linc-PMFBP1-1	NA	NA	NA	inter
LNCA_21_P0005898	5.0462823	P	5.6508837	P	0.65765305695815	0	lncRNA	TCONS_00015157	NA	NA	NA	NA	XLOC_007202	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007202), lincRNA [TCONS_00015157]"	chr8:124571848-124571789	hs|8q24.13	Agilent_HUMAN_G3V2	TCONS_00015157	TCONS_00015157	chr8	124571789	124571848	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14352_PI429285431	7.1220098	P	7.322896	P	0.870015976992094	0	lncRNA	16010-1_{1..1166}	lnc-SUPT3H-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUPT3H-1:9	chr6	 45544322	 45545487	-	lnc-SUPT3H-1	lnc-SUPT3H-1:9	XLOC_005737	linc-SUPT3H	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90"	NA	inter
CUST_2538_PI429285431	4.572998	P	5.540906	P	0.511246866243276	0	lncRNA	2526-1_{1..330}	"transcript_id ""ENST00000604014.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604014.1"" | genecode_v17"	chr6	 47444979	 47445308	-	ENSG00000270761.1	ENST00000604014.1	RP11-385F7.1	RP11-385F7.1-001	CD2AP	NA	chr6:47445525-47455308	inter
LNCA_21_P0014338	0.8947225	A	0.8992807	A	0.996845482500232	0	lncRNA	XR_109341	XR_109341	XR_109341	NA	Hs.512499	LOC100506183	uncharacterized LOC100506183	NA	THC2605216	NA	"PREDICTED: Homo sapiens hypothetical LOC100506183 (LOC100506183), miscRNA [XR_109341]"	chr16:89112798-89112739	hs|16q24.3	Agilent_HUMAN_G3V2	XR_109341	XR_109341	chr16	 89112739	 89112798	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38091_PI429285431	8.105084	P	8.232888	P	0.915223499061372	0	lncRNA	39167-1_{1..1779}	n381092|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001bqm.2||0.1578390|-0.2405417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n381092|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001bqm.2||0.1578390|-0.2405417	chr1	 28905051	 28906829	-	NA	NA	NA	NA	TRNAU1AP	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr1:28895051-28905057"	NA	inter
CUST_14359_PI429285431	0.89566284	A	0.986608	A	0.938907436566303	0	lncRNA	16017-1_{1..1187}	lnc-NOP58-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOP58-1:1	chr2	203177148	203178334	+	lnc-NOP58-1	lnc-NOP58-1:1	XLOC_001813	linc-BMPR2	NOP58	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70chr2:203167148-203168384"	NA	inter
CUST_43577_PI429285431	7.1869297	P	6.7389936	P	1.3640874152385	0	lncRNA	48348-1_{1..877}	"gi|311893296|ref|NR_037182.1| Homo sapiens phosphodiesterase 4D interacting protein pseudogene (LOC653513), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|311893296|ref|NR_037182.1| Homo sapiens phosphodiesterase 4D interacting protein pseudogene (LOC653513), non-coding RNA"	Chr1	144676437	144677313	-	653513	NR_037182.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008405	4.9113693	P	4.7382636	P	1.12748301490324	0	lncRNA	TCONS_00022655	NA	NA	NA	NA	XLOC_010952	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010952), lincRNA [TCONS_00022655]"	chr14:105565409-105565468	hs|14q32.33	Agilent_HUMAN_G3V2	TCONS_00022655	TCONS_00022655	chr14	105565409	105565468	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6114_PI429285431	0.91921955	A	0.91733897	A	1.00130436867462	0	lncRNA	6040-1_{1..366}	"transcript_id ""ENST00000578741.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578741.1"" | genecode_v17"	chr18	 19793741	 19794106	+	ENSG00000264825.1	ENST00000578741.1	RP11-627G18.4	RP11-627G18.4-001	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60"	NA	inter
CUST_29525_PI429285431	0.8934101	A	0.8933104	A	1.00006910916183	0	lncRNA	31283-1_{1..375}	n332983|AF114164|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000069831|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000069831|-1.3442100|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332983|AF114164|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000069831|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000069831|-1.3442100|-1.0000000	chr13	 78492708	 78493082	-	NA	NA	NA	NA	EDNRB	NA	chr13:78482708-78493903	inner
CUST_3068_PI429285431	4.1781588	P	4.627625	P	0.73231375538006	0	lncRNA	3047-1_{1..578}	"transcript_id ""ENST00000523748.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523748.1"" | genecode_v17"	chr8	 35720025	 35720602	+	ENSG00000253452.1	ENST00000523748.1	RP11-473J6.1	RP11-473J6.1-001	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90"	NA	inter
CUST_30356_PI429285431	0.89668953	A	0.9083847	A	0.991926294743183	0	lncRNA	32132-1_{1..331}	n335450|AY684333|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257116_11|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257116_11|-1.3651900|-0.2996531	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335450|AY684333|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257116_11|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257116_11|-1.3651900|-0.2996531	chr6	  3720261	  3720591	-	NA	NA	NA	NA	C6orf145	NA	chr6:3722836-3732355	inter
CUST_14581_PI429285431	3.2441592	P	3.3195312	P	0.949097363928263	0	lncRNA	16247-1_{1..476}	lnc-PGPEP1L-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PGPEP1L-1:3	chr15	 99640583	 99641058	-	lnc-PGPEP1L-1	lnc-PGPEP1L-1:3	XLOC_011607	linc-PGPEP1L	SYNM	NA	chr15:99645286-99650901	inter
CUST_41089_PI429285431	2.2576718	A	3.566681	P	0.403597963518504	0	lncRNA	41788-1_{1..110}	ENST00000384863 ncrna:miRNA chromosome:GRCh37:9:127454721:127454830:1 gene:ENSG00000207595 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384863 ncrna:miRNA chromosome:GRCh37:9:127454721:127454830:1 gene:ENSG00000207595 gene_biotype:miRNA transcript_biotype:miRNA	chr9	127454721	127454830	+	ENSG00000207595	ENST00000384863	NA	NA	NR6A1	NA	chr9:127444721-127464830	inner
CUST_19051_PI429285431	1.1801845	A	0.9138476	A	1.2027500838517	0	lncRNA	20741-1_{1..596}	lnc-ADAM21-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ADAM21-2:1	chr14	 70839698	 70840293	+	lnc-ADAM21-2	lnc-ADAM21-2:1	ENSG00000258889	RP11-718G2.4	SYNJ2BP-COX16	"hg19_refFlat_SYNJ2BP:range=chr14:70839708-708836805'pad=0,hg19_refFlat_SYNJ2BP:range=chr14:70839708-708836805'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_SYNJ2BP-COX16:range=chr14:70793050-708836805'pad=0,hg19_refFlat_SYNJ2BP-COX16:range=chr14:70793050-708836805'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40chr14:70829698-70849810"	NA	inner
LNCA_21_P0014204	0.8878545	A	0.888735	A	0.9993898701125	0	lncRNA	ENST00000419211	XR_108821	XR_108821	NA	Hs.43297	LOC100506957	NA	ENST00000419211	THC2633474	NA	"PREDICTED: Homo sapiens hypothetical LOC100506957 (LOC100506957), miscRNA [XR_108821]"	chr7:135617138-135617197	hs|7q33	Agilent_HUMAN_G3V2	ENST00000419211	ENST00000419211	chr7	135617138	135617197	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14739_PI429285431	0.88086534	A	0.8805294	A	1.00023288297687	0	lncRNA	16403-1_{1..243}	lnc-SLC4A3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC4A3-4:1	chr2	220659139	220659381	+	lnc-SLC4A3-4	lnc-SLC4A3-4:1	XLOC_001870	linc-CCDC140-9	NA	NA	NA	inter
CUST_28860_PI429285431	0.8941293	A	0.890531	A	1.00249726448321	0	lncRNA	30568-1_{1..662}	n326275|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000087442|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000087442|-0.9555720|-0.2996298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326275|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000087442|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000087442|-0.9555720|-0.2996298	chr1	197251884	197252545	+	NA	NA	NA	NA	CRB1	NA	chr1:197241884-197322487	inter
CUST_8188_PI429285431	4.506833	P	4.5669107	P	0.959212457114704	0	lncRNA	9787-1_{1..612}	lnc-PCYOX1L-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PCYOX1L-2:7	chr5	148803653	148804264	+	lnc-PCYOX1L-2	lnc-PCYOX1L-2:7	ENSG00000249669	RP11-394O4.2	NA	NA	NA	inter
CUST_14902_PI429285431	0.89694136	A	0.9051719	A	0.994311266875474	0	lncRNA	16565-1_{1..458}	lnc-SETD6-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SETD6-3:3	chr16	 60529925	 60530382	+	lnc-SETD6-3	lnc-SETD6-3:3	XLOC_011743	linc-CDH5-12	NA	NA	NA	inter
CUST_50254_PI429285431	2.0115976	A	2.0773072	A	0.955475244582768	0	lncRNA	53977-1_{1..557}	hg19_lincRNAsTranscripts_TCONS_l2_00029355 range=chr9:68427769-68430490 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029355 range=chr9:68427769-68430490 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 68427769	 68428325	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7495_PI429285431	6.899053	P	5.3771195	P	2.87175664661952	0	lncRNA	9135-1_{1..429}	lnc-CDC27-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CDC27-2:1	chr17	 45129070	 45129498	-	lnc-CDC27-2	lnc-CDC27-2:1	ENSG00000250104	ENST00000508811	NA	"hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0,hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0,hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0,hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0 3'pad=0 strand=- repeatMasking=none,-60.00;hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0,hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0,hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00"	NA	inter
LNCA_21_P0006062	3.5563707	P	3.8704739	P	0.804350831425626	0	lncRNA	ENST00000455039	NA	NA	NA	NA	XLOC_007608	NA	ENST00000455039	NA	NA	"BROAD Institute lincRNA (XLOC_007608), lincRNA [TCONS_00015775]"	chr9:138364010-138364069	hs|9q34.3	Agilent_HUMAN_G3V2	ENST00000455039	ENST00000455039	chr9	138364010	138364069	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002426	0.88767374	A	0.88646317	A	1.00083945532793	0	lncRNA	TCONS_00004219	NA	NA	NA	NA	XLOC_002063	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002063), lincRNA [TCONS_00004219]"	chr2:42615558-42615499	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00004219	TCONS_00004219	chr2	 42615499	 42615558	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42879_PI429285431	7.560297	P	7.7182007	P	0.896326527434201	0	lncRNA	45953-1_{1..83}	ENST00000383903 ncrna:snoRNA chromosome:GRCh37:16:2205024:2205106:-1 gene:ENSG00000206630 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000383903 ncrna:snoRNA chromosome:GRCh37:16:2205024:2205106:-1 gene:ENSG00000206630 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	  2205024	  2205106	-	ENSG00000206630	ENST00000383903	NA	NA	TRAF7	NA	chr16:2205799-2215106	inter
CUST_8431_PI429285431	1.2660319	A	0.898201	A	1.29041123095361	0	lncRNA	10002-1_{1..1161}	lnc-KIAA1919-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1919-2:1	chr6	111816445	111817605	+	lnc-KIAA1919-2	lnc-KIAA1919-2:1	ENSG00000245765	ENST00000511756	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40"	NA	inter
CUST_7986_PI429285431	0.89196795	A	0.89780176	A	0.995964475747875	0	lncRNA	9597-1_{1..2501}	lnc-KIAA1462-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1462-2:1	chr10	 30543637	 30546137	-	lnc-KIAA1462-2	lnc-KIAA1462-2:1	ENSG00000250659	ENST00000502624	NA	"hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30"	NA	inter
CUST_49541_PI429285431	0.8861481	A	1.155191	A	0.829869908199834	0	lncRNA	53333-1_{1..264}	hg19_lincRNAsTranscripts_TCONS_l2_00024786 range=chr6:52555628-52557865 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024786 range=chr6:52555628-52557865 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 52555628	 52555891	-	NA	NA	NA	NA	TMEM14A	NA	chr6:52545628-52551386	inter
CUST_2404_PI429285431	11.07036	P	10.971535	P	1.07090091422145	0	lncRNA	2396-1_{1..314}	"transcript_id ""ENST00000522769.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522769.1"" | genecode_v17"	chr5	157600609	157600922	-	ENSG00000253792.1	ENST00000522769.1	CTC-436K13.5	CTC-436K13.5-001	NA	NA	NA	inter
CUST_46199_PI429285431	4.3100023	P	4.460354	P	0.901030782674024	0	lncRNA	50443-1_{1..836}	"gi|388556526|ref|NR_046870.1| Homo sapiens long intergenic non-protein coding RNA 332 (LINC00332), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|388556526|ref|NR_046870.1| Homo sapiens long intergenic non-protein coding RNA 332 (LINC00332), non-coding RNA"	Chr13	 40755946	 40756781	+	100874127	NR_046870.1	NA	NA	NA	NA	NA	inter
CUST_48187_PI429285431	7.3591537	P	7.439027	P	0.946140734810046	0	lncRNA	52050-1_{1..1542}	"gi|410170278|ref|XR_172497.1| PREDICTED: Homo sapiens inosine-5'-monophosphate dehydrogenase 1-like (LOC101060750), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170278|ref|XR_172497.1| PREDICTED: Homo sapiens inosine-5'-monophosphate dehydrogenase 1-like (LOC101060750), misc_RNA"	NA	NA	NA	NA	NA	XR_172497.1	NA	NA	NA	NA	NA	Unknown
CUST_18929_PI429285431	10.800921	P	10.953924	P	0.899376441945072	0	lncRNA	20620-1_{1..529}	lnc-PSD4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PSD4-1:2	chr2	114020855	114021383	+	lnc-PSD4-1	lnc-PSD4-1:2	ENSG00000189223	AC016683.6	PAX8	NA	chr2:114010855-114030939	inner
CUST_42803_PI429285431	0.8947885	A	1.0584202	A	0.892774855400845	0	lncRNA	45799-1_{1..101}	ENST00000516394 ncrna:snoRNA chromosome:GRCh37:10:68254457:68254557:1 gene:ENSG00000252203 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516394 ncrna:snoRNA chromosome:GRCh37:10:68254457:68254557:1 gene:ENSG00000252203 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	 68254457	 68254557	+	ENSG00000252203	ENST00000516394	NA	NA	CTNNA3	NA	chr10:68244457-68264557	inner
CUST_12046_PI429285431	1.3733368	A	0.8896769	A	1.3982864127433	0	lncRNA	13631-1_{1..444}	lnc-ARIH2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARIH2-1:7	chr3	 48893662	 48894105	+	lnc-ARIH2-1	lnc-ARIH2-1:7	XLOC_002643	linc-ARIH2	SLC25A20	NA	chr3:48894356-48903739	inter
CUST_524_PI429285431	2.2039173	A	3.2144003	P	0.496380036780883	0	lncRNA	516-1_{1..583}	"transcript_id ""ENST00000428569.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428569.1"" | genecode_v17"	chr1	191827893	191828475	-	ENSG00000223344.1	ENST00000428569.1	RP11-541F9.1	RP11-541F9.1-002	NA	NA	NA	inter
LNCA_21_P0009990	10.924617	P	11.992769	P	0.476929524108681	0	lncRNA	TCONS_00028263	NA	NA	NA	NA	XLOC_013608	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013608), lincRNA [TCONS_00028263]"	chr20:61750484-61750543	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028263	TCONS_00028263	chr20	 61750484	 61750543	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8292_PI429285431	0.88842374	A	0.89245653	A	0.997208586242529	0	lncRNA	9877-1_{1..1904}	lnc-ITGB8-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITGB8-4:1	chr7	 20178768	 20180671	+	lnc-ITGB8-4	lnc-ITGB8-4:1	ENSG00000251524	ENST00000512161	MACC1	NA	chr7:20174278-20188822	inner
CUST_12023_PI429285431	0.9188305	A	0.9247932	A	0.995875500515032	0	lncRNA	13605-1_{1..401}	lnc-PXMP4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PXMP4-1:1	chr20	 32319463	 32319863	-	lnc-PXMP4-1	lnc-PXMP4-1:1	XLOC_013726	linc-PXMP4-1	ZNF341	NA	chr20:32319808-32329634	inter
CUST_47730_PI429285431	1.3206891	A	2.0465536	A	0.604634623406249	0	lncRNA	51684-2_{3001..5640}	"gi|385137081|ref|NR_047619.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 49, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137081|ref|NR_047619.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 49, non-coding RNA"	ChrY	 15363259	 15365898	-	7404	NR_047619.1	NA	NA	NA	NA	NA	inter
CUST_44210_PI429285431	5.6763263	P	6.193963	P	0.698515144430521	0	lncRNA	48864-1_{1..3000}	"gi|239937473|ref|NR_027794.1| Homo sapiens chromosome 3 open reading frame 17 (C3orf17), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239937473|ref|NR_027794.1| Homo sapiens chromosome 3 open reading frame 17 (C3orf17), transcript variant 2, non-coding RNA"	Chr3	112721291	112724290	-	25871	NR_027794.1	NA	NA	NA	NA	NA	inter
CUST_32624_PI429285431	0.8854095	A	0.8850621	A	1.00024082832501	0	lncRNA	34283-1_{1..1991}	n339248|S75989|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1680|NULL|13.3284000|-0.1328570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339248|S75989|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1680|NULL|13.3284000|-0.1328570	chr3	 10857916	 10859906	+	NA	NA	NA	NA	SLC6A11	NA	chr3:10857917-10980146	inner
LNCA_19_P00316183	2.3899658	A	1.1810005	A	2.31171781052523	0	lncRNA	ENST00000413563	NA	NA	NA	NA	XLOC_l2_008434	NA	ENST00000413563	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008434), lincRNA [TCONS_l2_00016082]"	chr2:216692134-216692075	hs|2q35	Agilent_HUMAN_G3V2	ENST00000413563	ENST00000413563	chr2	216692075	216692134	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48536_PI429285431	0.91114634	A	0.91713023	A	0.995860873413473	0	lncRNA	52385-1_{1..513}	hg19_lincRNAsTranscripts_TCONS_l2_00013845 range=chr2:98291839-98305440 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013845 range=chr2:98291839-98305440 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 98291839	 98292351	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8167_PI429285431	5.173843	P	4.9027705	P	1.20670455892715	0	lncRNA	9769-1_{1..1768}	lnc-C3orf71-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C3orf71-1:2	chr3	 48974258	 48976025	-	lnc-C3orf71-1	lnc-C3orf71-1:2	ENSG00000246870	ENST00000502241	ARIH2	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30chr3:48964258-48985090"	NA	inner
CUST_15018_PI429285431	1.7098069	A	1.576897	A	1.09650310702235	0	lncRNA	16680-1_{1..625}	lnc-SLC35F5-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC35F5-5:1	chr2	114800756	114801380	-	lnc-SLC35F5-5	lnc-SLC35F5-5:1	XLOC_002287	linc-SLC35F5-3	NA	NA	NA	inter
CUST_49890_PI429285431	0.93860126	A	0.91360307	A	1.01747841557713	0	lncRNA	53639-1_{1..1259}	hg19_lincRNAsTranscripts_TCONS_l2_00026701 range=chr7:76688455-76690900 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026701 range=chr7:76688455-76690900 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 76688455	 76689713	-	NA	NA	NA	NA	LOC100505767	NA	chr7:76682095-76689829	inter
CUST_25930_PI429285431	3.3701727	P	2.8533113	A	1.43083905242692	0	lncRNA	27449-1_{1..450}	lnc-UBASH3A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-UBASH3A-2:2	chr21	 43929355	 43929804	+	lnc-UBASH3A-2	lnc-UBASH3A-2:2	ENSG00000231867.1	AP001625.5	SLC37A1	NA	chr21:43919742-43939768	inner
CUST_16363_PI429285431	5.481698	P	5.006113	P	1.39048193359381	0	lncRNA	18061-1_{1..458}	lnc-PIK3R1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIK3R1-1:3	chr5	 67494018	 67494475	+	lnc-PIK3R1-1	lnc-PIK3R1-1:3	XLOC_004412	linc-PIK3R1-1	NA	NA	NA	inter
CUST_33130_PI429285431	1.3127437	A	0.89001703	A	1.34045860702339	0	lncRNA	34726-1_{1..557}	n339819|AF085831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2266|NULL|-1.2899300|-0.4066175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339819|AF085831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2266|NULL|-1.2899300|-0.4066175	chr18	 28638805	 28639361	-	NA	NA	NA	NA	DSC2	NA	chr18:28645942-28649359	inter
CUST_37909_PI429285431	0.89197016	A	0.8908222	A	1.00079602189479	0	lncRNA	38998-1_{1..1382}	n346448|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1998|NULL|-1.2924100|-0.2867749	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346448|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1998|NULL|-1.2924100|-0.2867749	chr8	128678425	128679806	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6852_PI429285431	1.317117	A	1.2443227	A	1.05175180934532	0	lncRNA	6800-1_{1..396}	"transcript_id ""ENST00000416145.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416145.1"" | genecode_v17"	chr21	 35553045	 35553440	+	ENSG00000227456.2	ENST00000416145.1	LINC00310	LINC00310-002	NA	NA	NA	inter
CUST_17516_PI429285431	0.9132722	A	2.471806	A	0.339495933733041	0	lncRNA	19241-1_{1..519}	lnc-KIF20B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIF20B-4:1	chr10	 91646455	 91646973	+	lnc-KIF20B-4	lnc-KIF20B-4:1	XLOC_008554	linc-RPP30-5	NA	NA	NA	inter
CUST_46039_PI429285431	1.9782587	A	2.7282102	A	0.594623547004661	0	lncRNA	50317-1_{1..2353}	"gi|223972675|ref|NR_026948.1| Homo sapiens uncharacterized LOC283332 (LOC283332), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223972675|ref|NR_026948.1| Homo sapiens uncharacterized LOC283332 (LOC283332), non-coding RNA"	Chr12	 50302665	 50305017	-	283332	NR_026948.1	NA	NA	NA	NA	NA	inter
CUST_13410_PI429285431	8.866636	P	8.633883	P	1.17507512969368	0	lncRNA	15047-1_{1..528}	lnc-LCLAT1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LCLAT1-2:2	chr2	 31057943	 31058470	+	lnc-LCLAT1-2	lnc-LCLAT1-2:2	XLOC_001414	linc-EHD3-1	NA	NA	NA	inter
CUST_11644_PI429285431	3.210886	P	3.0096335	A	1.14969604984233	0	lncRNA	13221-1_{1..261}	lnc-CTC-236F12.4.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTC-236F12.4.1-3:1	chr5	 55832186	 55832446	-	lnc-CTC-236F12.4.1-3	lnc-CTC-236F12.4.1-3:1	XLOC_004831	linc-ANKRD55-3	NA	NA	NA	inter
CUST_43307_PI429285431	8.487815	P	7.9957314	P	1.40647469868784	0	lncRNA	48138-2_{3001..4588}	ENST00000588930 havana:lincRNA chromosome:GRCh37:19:32962847:32967434:1 gene:ENSG00000267569 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000588930 havana:lincRNA chromosome:GRCh37:19:32962847:32967434:1 gene:ENSG00000267569 gene_biotype:lincRNA transcript_biotype:lincRNA	chr19	 32965847	 32967434	+	ENSG00000267569	ENST00000588930	NA	NA	DPY19L3	"hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr19:32952847-32976799"	NA	inner
CUST_36159_PI429285431	0.906293	A	0.9171992	A	0.992468900142633	0	lncRNA	37432-2_{3001..3696}	n344719|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_268|NULL|-1.5775600|-0.3518995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344719|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_268|NULL|-1.5775600|-0.3518995	chr6	 53600576	 53601271	-	NA	NA	NA	NA	LRRC1	NA	chr6:53659778-53668488	inter
LNCA_33_P3340324	2.350435	A	1.7621626	A	1.50344532172851	0	lncRNA	XR_109844	XR_109844	XR_109844	   345051	Hs.170876	LOC345051	hCG38984	NA	THC2651604	NA	"PREDICTED: Homo sapiens hCG38984 (LOC345051), miscRNA [XR_109844]"	chr4:147151602-147151661	hs|4q31.22	Agilent_HUMAN_G3V2	XR_109844	XR_109844	chr4	147151602	147151661	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002788	0.9038384	A	1.1830729	A	0.824028134050745	0	lncRNA	ENST00000490497	NA	NA	NA	NA	XLOC_002886	NA	ENST00000490497	NA	NA	"BROAD Institute lincRNA (XLOC_002886), lincRNA [TCONS_00005631]"	chr3:154960874-154960933	hs|3q25.2	Agilent_HUMAN_G3V2	ENST00000490497	ENST00000490497	chr3	154960874	154960933	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26615_PI429285431	1.6372772	A	0.95299244	A	1.60690513409961	0	lncRNA	28118-1_{1..478}	lnc-RGMB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RGMB-1:1	chr5	 98330511	 98330988	+	lnc-RGMB-1	lnc-RGMB-1:1	ENSG00000248489.1	CTD-2007H13.3	NA	NA	NA	inter
CUST_49074_PI429285431	0.8959768	A	0.9054215	A	0.993474814909465	0	lncRNA	52899-1_{1..474}	hg19_lincRNAsTranscripts_TCONS_l2_00021036 range=chr4:6013585-6020234 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021036 range=chr4:6013585-6020234 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  6013585	  6014058	-	NA	NA	NA	NA	JAKMIP1	NA	chr4:6027926-6030234	inter
CUST_14434_PI429285431	5.5356517	P	5.6022406	P	0.954893074836683	0	lncRNA	16095-1_{1..221}	lnc-CFH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CFH-1:1	chr1	195469301	195469521	+	lnc-CFH-1	lnc-CFH-1:1	XLOC_000511	linc-CFH-1	NA	NA	NA	inter
LNCA_21_P0008308	0.90832263	A	2.2362306	A	0.398345457922551	0	lncRNA	TCONS_00022446	NA	NA	NA	NA	XLOC_010778	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010778), lincRNA [TCONS_00022446]"	chr14:27289660-27289719	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022446	TCONS_00022446	chr14	 27289660	 27289719	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16397_PI429285431	10.513932	P	10.414212	P	1.07156547162946	0	lncRNA	18093-1_{1..444}	lnc-AL355149.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL355149.1-1:2	chr1	 16848059	 16848502	+	lnc-AL355149.1-1	lnc-AL355149.1-1:2	XLOC_000063	linc-CROCC-3	NA	NA	NA	inter
CUST_37253_PI429285431	2.2715302	A	3.1038814	A	0.561613219520308	0	lncRNA	38360-1_{1..673}	n345684|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1233|NULL|-1.3144800|-0.2260559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345684|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1233|NULL|-1.3144800|-0.2260559	chr20	 35965851	 35966523	-	NA	NA	NA	NA	SRC	NA	chr20:35973088-35978900	inter
CUST_35777_PI429285431	5.8935833	P	6.3654065	P	0.72105279419767	0	lncRNA	37192-1_{1..3000}	n344462|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_10|NULL|-1.2985500|-0.3316243	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n344462|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_10|NULL|-1.2985500|-0.3316243	chr9	 96928534	 96931533	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10"	NA	inter
CUST_33199_PI429285431	1.2309568	A	1.798714	A	0.674664801094663	0	lncRNA	34790-2_{3001..3600}	n339894|AK124558|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2342|NULL|-0.6008330|-0.2301386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339894|AK124558|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2342|NULL|-0.6008330|-0.2301386	chr18	 55157942	 55158541	+	NA	NA	NA	NA	ONECUT2	NA	chr18:55144942-55158530	inner
CUST_14560_PI429285431	0.90365005	A	0.9132331	A	0.993379548310097	0	lncRNA	16230-1_{1..323}	lnc-C5orf17-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf17-5:1	chr5	 25260682	 25261004	+	lnc-C5orf17-5	lnc-C5orf17-5:1	XLOC_004322	linc-CDH6-6	NA	NA	NA	inter
CUST_44688_PI429285431	1.4800148	A	0.9004275	A	1.49442169046319	0	lncRNA	49247-2_{3001..4029}	"gi|215820655|ref|NR_002722.2| Homo sapiens zinc finger protein 204, pseudogene (ZNF204P), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|215820655|ref|NR_002722.2| Homo sapiens zinc finger protein 204, pseudogene (ZNF204P), transcript variant 1, non-coding RNA"	Chr6	 27328602	 27329630	-	7754	NR_002722.2	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
CUST_48425_PI429285431	1.2458539	A	2.0199513	A	0.584754352444394	0	lncRNA	52277-1_{1..1186}	hg19_lincRNAsTranscripts_TCONS_l2_00000591 range=chr1:149239616-149255889 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000591 range=chr1:149239616-149255889 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	149239616	149240801	+	NA	NA	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
CUST_26611_PI429285431	4.5713787	P	4.4774947	P	1.06723952311832	0	lncRNA	28114-1_{1..552}	lnc-CBR4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CBR4-1:1	chr4	169753888	169754439	-	lnc-CBR4-1	lnc-CBR4-1:1	ENSG00000249609.1	RP11-635L1.3	PALLD	NA	chr4:169743888-169764088	inner
CUST_5751_PI429285431	5.0826592	P	5.502881	P	0.747309724054967	0	lncRNA	5676-1_{1..564}	"transcript_id ""ENST00000456090.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456090.2"" | genecode_v17"	chr17	 17577340	 17577903	-	ENSG00000223979.2	ENST00000456090.2	SMCR2	SMCR2-001	RAI1	NA	chr17:17584787-17591002	inter
CUST_24497_PI429285431	3.3503926	P	3.659624	P	0.807071614470301	0	lncRNA	26049-1_{1..664}	lnc-BACH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BACH1-1:1	chr21	 30660305	 30660968	+	lnc-BACH1-1	lnc-BACH1-1:1	ENSG00000215533.4	LINC00189	BACH1	NA	chr21:30650305-30670526	inter
LNCA_21_P0014754	0.90737927	A	0.91804445	A	0.992634718163563	0	lncRNA	XR_132496	XR_132496	XR_132496	NA	NA	LOC100652937	uncharacterized LOC100652937	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652937 (LOC100652937), miscRNA [XR_132496]"	chr3:150261792-150261851	hs|3q25.1	Agilent_HUMAN_G3V2	XR_132496	XR_132496	chr3	150261792	150261851	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002126	0.90699357	A	0.9173957	A	0.992815724101265	0	lncRNA	ENST00000456446	NA	NA	NA	NA	XLOC_002418	NA	ENST00000456446	NA	NA	"BROAD Institute lincRNA (XLOC_002418), lincRNA [TCONS_00003461]"	chr2:182286952-182286893	hs|2q31.3	Agilent_HUMAN_G3V2	ENST00000456446	ENST00000456446	chr2	182286893	182286952	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48229_PI429285431	0.8906056	A	0.8976919	A	0.99510019453751	0	lncRNA	52092-1_{1..1868}	hg19_lincRNAsTranscripts_TCONS_l2_00001505 range=chr1:146853355-146989742 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001505 range=chr1:146853355-146989742 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	146853355	146855222	-	NA	NA	NA	NA	BCL9	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30chr1:146890733-146999742"	NA	inter
CUST_9922_PI429285431	1.7270017	A	0.8955641	A	1.77945765246723	0	lncRNA	11447-1_{1..383}	lnc-DDX27-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DDX27-4:1	chr20	 47948483	 47948865	+	lnc-DDX27-4	lnc-DDX27-4:1	XLOC_013555	linc-SLC9A8	NA	NA	NA	inter
CUST_43763_PI429285431	5.0800543	P	4.9803762	P	1.07153435074805	0	lncRNA	48500-1_{1..714}	"gi|397138932|ref|XR_132881.2| PREDICTED: Homo sapiens putative uncharacterized protein FLJ44672-like (LOC100505955), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138932|ref|XR_132881.2| PREDICTED: Homo sapiens putative uncharacterized protein FLJ44672-like (LOC100505955), misc_RNA"	NA	NA	NA	NA	NA	XR_132881.2	NA	NA	NA	NA	NA	Unknown
CUST_104_PI429201921	0.89135027	A	0.89619863	A	0.996645013522388	0	lncRNA	107-1_{1..3000}	TC01004593.hg.1	 TCONS_l2_00000472-XLOC_l2_000342 // Broad TUCP // linc-NBPF6-2 chr1:+:108614115-108615265 // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00002123-XLOC_l2_000342 // Broad TUCP // linc-NBPF6-2 chr1:+:108614992-108617115 // chr1 // 100 // 100 // 0 // --- // 0///TCONS_l2_00002122-XLOC_l2_000342 // Broad TUCP // linc-NBPF6-2 chr1:+:108614103-108617141 // chr1 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:108614103-108617141	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00002122-XLOC_l2_000342	linc-NBPF6-2	chr1	108614103	108617141	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51644_PI429285431	1.0778021	A	1.1342415	A	0.961634526116514	0	lncRNA	55214-1_{1..1200}	hg19_lincRNAsTranscripts_TCONS_l2_00011376 range=chr17:58200677-58213063 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011376 range=chr17:58200677-58213063 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 58200677	 58201876	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10"	NA	inter
CUST_9190_PI429285431	3.496614	P	4.2274313	P	0.602562459964608	0	lncRNA	10702-2_{3001..3264}	lnc-COL20A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-COL20A1-1:1	chr20	 62005213	 62005476	+	lnc-COL20A1-1	lnc-COL20A1-1:1	ENSG00000203900	RP11-261N11.8	CHRNA4	NA	chr20:61992213-61992695	inter
CUST_38723_PI429285431	6.193658	P	5.976249	P	1.16264366702185	0	lncRNA	39718-1_{1..1569}	n384213|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bus.2||1.1801400|-0.1853374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384213|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bus.2||1.1801400|-0.1853374	chr3	 10055925	 10057493	-	NA	NA	NA	NA	FANCD2	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70chr3:10068113-10077820"	NA	inter
CUST_46322_PI429285431	11.147167	P	10.47032	P	1.59864211329087	0	lncRNA	50551-1_{1..931}	"gi|330688470|ref|NR_038123.1| Homo sapiens proteasome (prosome, macropain) subunit, alpha type, 3 (PSMA3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|330688470|ref|NR_038123.1| Homo sapiens proteasome (prosome, macropain) subunit, alpha type, 3 (PSMA3), transcript variant 3, non-coding RNA"	Chr14	 58711523	 58712453	+	5684	NR_038123.1	NA	NA	NA	NA	NA	inter
CUST_1519_PI429285431	1.4614983	A	1.5440774	A	0.944367894187496	0	lncRNA	1506-1_{1..393}	"transcript_id ""ENST00000498241.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000498241.1"" | genecode_v17"	chr3	157734160	157734552	-	ENSG00000242536.1	ENST00000498241.1	RP11-290K4.2	RP11-290K4.2-001	SHOX2	NA	chr3:157813800-157816786	inter
CUST_4408_PI429285431	3.274234	P	2.4111319	A	1.81894522639525	0	lncRNA	4358-1_{1..590}	"transcript_id ""ENST00000546852.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546852.1"" | genecode_v17"	chr12	111389487	111390076	-	ENSG00000258240.1	ENST00000546852.1	RP1-46F2.3	RP1-46F2.3-001	NA	NA	NA	inter
CUST_4212_PI429285431	2.2345006	A	2.8341806	A	0.659900309727156	0	lncRNA	4171-1_{1..593}	"transcript_id ""ENST00000553075.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553075.1"" | genecode_v17"	chr12	 29296129	 29296721	-	ENSG00000257258.1	ENST00000553075.1	RP11-946L16.1	RP11-946L16.1-001	NA	NA	NA	inter
CUST_29403_PI429285431	3.1349564	P	0.98720765	A	4.43135758902222	0	lncRNA	31157-1_{1..321}	n332762|AF026942|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062856|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062856|-1.3620000|-0.4231324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332762|AF026942|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062856|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062856|-1.3620000|-0.4231324	chr2	  7037596	  7037916	+	NA	NA	NA	NA	RSAD2	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-29.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80chr2:7027596-7038363"	NA	inner
CUST_16101_PI429285431	3.1788538	P	4.2602334	P	0.472576698263158	0	lncRNA	17806-1_{1..305}	lnc-MIB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MIB2-1:1	chr1	  1536037	  1536341	+	lnc-MIB2-1	lnc-MIB2-1:1	XLOC_000019	linc-MIB2	LOC643988	NA	chr1:1533388-1535476	inter
LNCA_21_P0014489	0.89175963	A	0.8952801	A	0.99756277102242	0	lncRNA	ENST00000522646	XR_110063	XR_110063	NA	NA	LOC100507193	NA	ENST00000522646	THC2531469	NA	"PREDICTED: Homo sapiens hypothetical LOC100507193 (LOC100507193), miscRNA [XR_110063]"	chr5:164598542-164598601	hs|5q34	Agilent_HUMAN_G3V2	ENST00000522646	ENST00000522646	chr5	164598542	164598601	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_155_PI429201921	1.4795067	A	0.90109044	A	1.49320915595827	0	lncRNA	133-2_{...	TC6_dbb_hap3000204.hg.1	TCONS_00029966-XLOC_014451 // Rinn lincRNAs // linc-C3orf58-2 chr6_dbb_hap3:-:130811-134864 // chr6_dbb_hap3 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6_dbb_hap3:-:130811-134864	NA	Affy_HUMAN_HTA2.0	TCONS_00029966-XLOC_014451	linc-C3orf58-2	chr6_dbb_hap3	   130811	   134864	-	NA	NA	NA	NA	C1orf174	NA	chr1:3806936-3816857	Unknown
CUST_18971_PI429285431	0.9187105	A	1.1914123	A	0.827767895114706	0	lncRNA	20663-1_{1..503}	lnc-PPIAL4G-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPIAL4G-2:5	chr1	143663878	143664380	-	lnc-PPIAL4G-2	lnc-PPIAL4G-2:5	ENSG00000223804	BX284650.1	NA	NA	NA	inter
CUST_23384_PI429285431	7.380934	P	7.526305	P	0.904146839428015	0	lncRNA	24952-1_{1..550}	lnc-SRGAP3-1:19	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRGAP3-1:19	chr3	  9438244	  9438793	-	lnc-SRGAP3-1	lnc-SRGAP3-1:19	ENSG00000206573.4	RP11-58B17.1	LOC100652926	NA	chr3:9435634-9438752	inter
CUST_20207_PI429285431	2.2183905	A	3.4899964	P	0.414198461520024	0	lncRNA	21851-1_{1..465}	lnc-PHLPP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHLPP2-1:1	chr16	 71660501	 71660965	-	lnc-PHLPP2-1	lnc-PHLPP2-1:1	ENSG00000260593.1	RP11-432I5.2	MARVELD3	"hg19_refFlat_MARVELD3:range=chr16:71660133-716749305'pad=0,hg19_refFlat_MARVELD3:range=chr16:71660133-716749305'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.70;hg19_refFlat_MARVELD3:range=chr16:71660133-716687065'pad=0,hg19_refFlat_MARVELD3:range=chr16:71660133-716687065'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.70chr16:71660070-71670719"	NA	inner
CUST_17558_PI429285431	0.8990915	A	0.89485586	A	1.0029402359635	0	lncRNA	19286-1_{1..390}	lnc-CISD2-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CISD2-3:6	chr4	104374757	104375146	+	lnc-CISD2-3	lnc-CISD2-3:6	XLOC_003629	linc-TET2-5	NA	NA	NA	inter
CUST_46115_PI429285431	5.0491834	P	3.8840487	P	2.24254152548969	0	lncRNA	50376-1_{1..3000}	"gi|333609226|ref|NR_038241.1| Homo sapiens vezatin, adherens junctions transmembrane protein (VEZT), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333609226|ref|NR_038241.1| Homo sapiens vezatin, adherens junctions transmembrane protein (VEZT), transcript variant 2, non-coding RNA"	Chr12	 95611522	 95614521	+	55591	NR_038241.1	NA	NA	NA	NA	NA	inter
CUST_42360_PI429285431	0.8846954	A	0.8816226	A	1.00213217251032	0	lncRNA	45033-1_{1..138}	ENST00000365346 ncrna:snoRNA chromosome:GRCh37:2:180799128:180799265:-1 gene:ENSG00000202216 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365346 ncrna:snoRNA chromosome:GRCh37:2:180799128:180799265:-1 gene:ENSG00000202216 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	180799128	180799265	-	ENSG00000202216	ENST00000365346	NA	NA	NA	NA	NA	inter
CUST_7432_PI429285431	1.1035918	A	1.6787016	A	0.671235163375308	0	lncRNA	9074-1_{1..565}	lnc-WRNIP1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WRNIP1-2:4	chr6	  2397455	  2398019	+	lnc-WRNIP1-2	lnc-WRNIP1-2:4	ENSG00000250903	RP1-80B9.2	NA	NA	NA	inter
CUST_13578_PI429285431	0.88366586	A	0.8855174	A	0.99871743346171	0	lncRNA	15219-1_{1..3000}	lnc-CCDC13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CCDC13-1:1	chr3	 42724307	 42727306	-	lnc-CCDC13-1	lnc-CCDC13-1:1	XLOC_003100	linc-SEC22C-1	KBTBD5	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30chr3:42727011-42733938"	NA	inter
CUST_29963_PI429285431	0.89583606	A	0.9029341	A	0.99509209689496	0	lncRNA	31729-1_{1..586}	n334169|M97920|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196999|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196999|3.7666200|-0.1162427	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334169|M97920|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196999|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196999|3.7666200|-0.1162427	chr14	106209330	106209915	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23160_PI429285431	2.9528522	P	2.5146084	A	1.35495393083225	0	lncRNA	24731-1_{1..729}	lnc-NKX6-3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKX6-3-1:1	chr8	 41478476	 41479204	-	lnc-NKX6-3-1	lnc-NKX6-3-1:1	ENSG00000264578.1	RP11-360L9.8	AGPAT6	"hg19_refFlat_AGPAT6:range=chr8:41456659-414785205'pad=0,hg19_refFlat_AGPAT6:range=chr8:41456659-414785205'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60chr8:41468476-41482520"	NA	inner
CUST_7966_PI429285431	0.8845928	A	0.88740987	A	0.998049261041364	0	lncRNA	9578-1_{1..594}	lnc-RASA1-7:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASA1-7:13	chr5	 88464067	 88464660	+	lnc-RASA1-7	lnc-RASA1-7:13	ENSG00000248309	CTC-454M9.1	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10"	NA	inter
CUST_40436_PI429285431	10.028392	P	9.999331	P	1.02034780065967	0	lncRNA	41216-2_{3001..3598}	n409328|NR_033683|lncRNA|Homosapiens||RefGeneNoncode|NR_033683||6.7538000|-0.1007668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409328|NR_033683|lncRNA|Homosapiens||RefGeneNoncode|NR_033683||6.7538000|-0.1007668	chr17	 79863776	 79864373	-	NA	NA	NA	NA	ANAPC11	NA	chr17:79850776-79858363	inter
CUST_19791_PI429285431	6.1894903	P	6.3005695	P	0.925895192026075	0	lncRNA	21449-1_{1..351}	lnc-ZNF680-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ZNF680-9:1	chr7	 62701969	 62702319	-	lnc-ZNF680-9	lnc-ZNF680-9:1	ENSG00000244550.1	RP5-905H7.3	NA	NA	NA	inter
CUST_74_PI429201921	3.8614032	P	2.5715923	A	2.44496006336279	0	lncRNA	76-1_{1..2283}	TC0X001814.hg.1	 TCONS_l2_00030317-XLOC_l2_015590 // Broad TUCP // linc-H2BFM chrX:+:103230847-103232621 // chrX // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00030318-XLOC_l2_015590 // Broad TUCP // linc-H2BFM chrX:+:103231001-103232047 // chrX // 100 // 100 // 0 // --- // 0///TCONS_l2_00030737-XLOC_l2_015590 // Broad TUCP // linc-H2BFM chrX:+:103230501-103232785 // chrX // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chrX:+:103230501-103232785	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00030737-XLOC_l2_015590	linc-H2BFM	chrX	103230501	103232785	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25667_PI429285431	5.4060445	P	5.7448463	P	0.790697736598097	0	lncRNA	27196-1_{1..1294}	lnc-WNT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WNT1-2:1	chr12	 49412019	 49413312	+	lnc-WNT1-2	lnc-WNT1-2:1	ENSG00000257913.1	RP11-386G11.5	MLL2	"hg19_refFlat_DDN:range=chr12:49390523-493930705'pad=0,hg19_refFlat_DDN:range=chr12:49390523-493930705'pad=0 3'pad=0 strand=- repeatMasking=none,-110.60chr12:49412758-49422988"	NA	inner
CUST_44752_PI429285431	0.8811032	A	0.8804478	A	1.00045439186686	0	lncRNA	49299-1_{1..3000}	"gi|254826702|ref|NR_026938.2| Homo sapiens adenylate cyclase 10 (soluble) pseudogene 1 (ADCY10P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254826702|ref|NR_026938.2| Homo sapiens adenylate cyclase 10 (soluble) pseudogene 1 (ADCY10P1), non-coding RNA"	Chr6	 41068773	 41071772	+	221442	NR_026938.2	NA	NA	NA	NA	NA	inter
CUST_43482_PI429285431	1.1159846	A	1.848541	A	0.601836537304881	0	lncRNA	48278-1_{1..3000}	"gi|313851014|ref|NR_037640.1| Homo sapiens HEATR8-TTC4 readthrough (HEATR8-TTC4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|313851014|ref|NR_037640.1| Homo sapiens HEATR8-TTC4 readthrough (HEATR8-TTC4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_037640.1	NA	NA	NA	NA	NA	Unknown
CUST_36921_PI429285431	2.9033976	A	3.4238262	P	0.697164686712822	0	lncRNA	38078-2_{3001..4031}	n345392|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_941|NULL|-1.3307700|-0.3408934	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n345392|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_941|NULL|-1.3307700|-0.3408934	chr21	 29952540	 29953570	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0,hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40"	NA	inter
CUST_47360_PI429285431	1.9721837	A	1.1491653	A	1.76910343350185	0	lncRNA	51410-1_{1..846}	"gi|410170759|ref|XR_132676.2| PREDICTED: Homo sapiens uncharacterized LOC100652994 (LOC100652994), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170759|ref|XR_132676.2| PREDICTED: Homo sapiens uncharacterized LOC100652994 (LOC100652994), misc_RNA"	NA	NA	NA	NA	NA	XR_132676.2	NA	NA	NA	NA	NA	Unknown
CUST_13883_PI429285431	3.0336885	P	1.615856	A	2.67183793263594	0	lncRNA	15526-1_{1..790}	lnc-NAA50-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAA50-2:1	chr3	113432476	113433265	-	lnc-NAA50-2	lnc-NAA50-2:1	XLOC_003221	linc-KIAA2018	NAA50	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.02;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80chr3:113435307-113443137"	NA	inter
CUST_9529_PI429285431	6.055443	P	6.529338	P	0.720018060591732	0	lncRNA	11039-1_{1..339}	lnc-DENND3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DENND3-1:1	chr8	142122783	142123121	+	lnc-DENND3-1	lnc-DENND3-1:1	XLOC_006944	linc-DENND3-1	NA	NA	NA	inter
LNCA_21_P0013019	0.89071405	A	0.88899255	A	1.0011939650808	0	lncRNA	TCONS_l2_00024089	NA	NA	NA	NA	XLOC_l2_012432	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012432), lincRNA [TCONS_l2_00024089]"	chr6:23397638-23397697	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_l2_00024089	TCONS_l2_00024089	chr6	 23397638	 23397697	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007964	0.8912486	A	0.8895126	A	1.00120402776559	0	lncRNA	ENST00000432575	NA	NA	NA	NA	XLOC_010492	NA	ENST00000432575	NA	NA	"BROAD Institute lincRNA (XLOC_010492), lincRNA [TCONS_00021595]"	chr13:109962520-109962579	hs|13q33.3	Agilent_HUMAN_G3V2	ENST00000432575	ENST00000432575	chr13	109962520	109962579	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49177_PI429285431	0.8975609	A	1.1669359	A	0.829678898963369	0	lncRNA	53001-1_{1..1665}	hg19_lincRNAsTranscripts_TCONS_l2_00021321 range=chr4:142237870-142254310 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021321 range=chr4:142237870-142254310 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	142237870	142239534	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40"	NA	inter
CUST_41188_PI429285431	0.9013234	A	0.90704954	A	0.996038808502698	0	lncRNA	42043-1_{1..70}	ENST00000408575 ncrna:miRNA chromosome:GRCh37:2:189842818:189842887:1 gene:ENSG00000221502 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408575 ncrna:miRNA chromosome:GRCh37:2:189842818:189842887:1 gene:ENSG00000221502 gene_biotype:miRNA transcript_biotype:miRNA	chr2	189842818	189842887	+	ENSG00000221502	ENST00000408575	NA	NA	COL3A1	NA	chr2:189839099-189852887	inner
CUST_9156_PI429285431	0.9012455	A	0.90999496	A	0.993953689421211	0	lncRNA	10675-1_{1..2690}	lnc-PROC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PROC-1:1	chr2	128155523	128158212	+	lnc-PROC-1	lnc-PROC-1:1	ENSG00000236682	AC068282.3	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80"	NA	inter
CUST_16481_PI429285431	0.88637453	A	0.8900025	A	0.997488442075819	0	lncRNA	18179-1_{1..1093}	lnc-SIAH2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIAH2-1:3	chr3	150456341	150457433	-	lnc-SIAH2-1	lnc-SIAH2-1:3	XLOC_003284	linc-FAM194A	SIAH2	NA	chr3:150458910-150466770	inter
CUST_34851_PI429285431	0.9024081	A	0.90281385	A	0.999718795077006	0	lncRNA	36277-1_{1..340}	n341756|X64977|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4230|NULL|1.4629000|-0.1072570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341756|X64977|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4230|NULL|1.4629000|-0.1072570	chr9	114089999	114090338	-	NA	NA	NA	NA	OR2K2	NA	chr9:114089763-114090713	inner
CUST_21388_PI429285431	4.711315	P	4.8968534	P	0.879320860542206	0	lncRNA	23010-1_{1..1083}	lnc-C6orf221-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C6orf221-2:1	chr6	 73985490	 73986572	+	lnc-C6orf221-2	lnc-C6orf221-2:1	ENSG00000229852.2	RP11-398K22.12	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50"	NA	inter
CUST_26171_PI429285431	1.1382357	A	1.38395	A	0.843398113654865	0	lncRNA	27682-1_{1..426}	lnc-SNTG2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNTG2-3:2	chr2	   697147	   697572	+	lnc-SNTG2-3	lnc-SNTG2-3:2	ENSG00000233296.1	AC092159.2	NA	NA	NA	inter
LNCA_21_P0002112	0.89648527	A	0.8943557	A	1.00147719542118	0	lncRNA	ENST00000418416	NA	NA	NA	NA	XLOC_002348	NA	ENST00000418416	THC2739397	NA	"BROAD Institute lincRNA (XLOC_002348), lincRNA [TCONS_00003416]"	chr2:146358595-146358536	hs|2q22.3	Agilent_HUMAN_G3V2	ENST00000418416	ENST00000418416	chr2	146358536	146358595	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36713_PI429285431	0.8867571	A	0.88928485	A	0.998249431250365	0	lncRNA	37892-1_{1..911}	n345199|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_748|NULL|-1.3147600|-0.3148861	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345199|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_748|NULL|-1.3147600|-0.3148861	chr13	 50764662	 50765572	-	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70"	NA	inter
CUST_45714_PI429285431	0.8948806	A	1.724382	A	0.562723687840336	0	lncRNA	50081-1_{1..1904}	"gi|213417947|ref|NR_024471.1| Homo sapiens MRPL23 antisense RNA 1 (MRPL23-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|213417947|ref|NR_024471.1| Homo sapiens MRPL23 antisense RNA 1 (MRPL23-AS1), non-coding RNA"	Chr11	  2004439	  2006342	-	100133545	NR_024471.1	NA	NA	NA	NA	NA	inter
CUST_24075_PI429285431	0.89884543	A	0.8944045	A	1.00308296068691	0	lncRNA	25625-1_{1..729}	lnc-CD40LG-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CD40LG-2:4	chrX	136103571	136104299	+	lnc-CD40LG-2	lnc-CD40LG-2:4	ENSG00000234062.3	RP11-308D16.4	GPR101	NA	chrX:136112307-136113777	inter
CUST_22627_PI429285431	1.3958402	A	1.4393029	A	0.970323218573263	0	lncRNA	24213-1_{1..541}	lnc-VWA3B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-VWA3B-1:1	chr2	 98967247	 98967787	+	lnc-VWA3B-1	lnc-VWA3B-1:1	ENSG00000227987.1	AC092675.4	CNGA3	NA	chr2:98962618-98977603	inner
CUST_35844_PI429285431	0.90954316	A	0.90374243	A	1.00402885374326	0	lncRNA	37244-1_{1..3000}	n344515|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_63|NULL|-1.5385100|-0.2682354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344515|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_63|NULL|-1.5385100|-0.2682354	chr19	 56794715	 56797714	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40"	NA	inter
CUST_26055_PI429285431	7.210112	P	7.343482	P	0.91169931706402	0	lncRNA	27569-1_{1..332}	lnc-SIRT5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SIRT5-1:1	chr6	 13486913	 13487244	+	lnc-SIRT5-1	lnc-SIRT5-1:1	ENSG00000237786.1	GFOD1-AS1	GFOD1	"hg19_refFlat_GFOD1:range=chr6:13470669-134871225'pad=0,hg19_refFlat_GFOD1:range=chr6:13470669-134871225'pad=0 3'pad=0 strand=- repeatMasking=none,-98.10;hg19_refFlat_GFOD1:range=chr6:13364975-134871225'pad=0,hg19_refFlat_GFOD1:range=chr6:13364975-134871225'pad=0 3'pad=0 strand=- repeatMasking=none,-98.10chr6:13476913-13487869"	NA	inner
CUST_37385_PI429285431	4.6978426	P	5.3740435	P	0.625811077021031	0	lncRNA	38488-1_{1..2006}	n345834|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1383|NULL|-1.2820300|-0.3050256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345834|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1383|NULL|-1.2820300|-0.3050256	chr8	128680239	128682244	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23594_PI429285431	1.5176097	A	1.2758794	A	1.18240993774616	0	lncRNA	25160-2_{3001..4206}	lnc-ZNF765-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF765-1:1	chr19	 53960901	 53962106	+	lnc-ZNF765-1	lnc-ZNF765-1:1	ENSG00000160336.10	ZNF761	ZNF813	NA	chr19:53966222-53971514	inner
CUST_20875_PI429285431	2.3219485	A	1.9822044	A	1.26553209857924	0	lncRNA	22506-1_{1..498}	lnc-ZNF423-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF423-3:1	chr16	 50099964	 50100461	-	lnc-ZNF423-3	lnc-ZNF423-3:1	ENSG00000259843.2	RP11-429P3.3	HEATR3	"hg19_refFlat_HEATR3:range=chr16:50100043-501389725'pad=0,hg19_refFlat_HEATR3:range=chr16:50100043-501389725'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30chr16:50099881-50110135"	NA	inner
CUST_11223_PI429285431	1.0280074	A	0.9031416	A	1.09040629797033	0	lncRNA	12781-1_{1..283}	lnc-TXLNB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TXLNB-2:1	chr6	139644864	139645146	-	lnc-TXLNB-2	lnc-TXLNB-2:1	XLOC_005854	linc-TXLNB-1	NA	NA	NA	inter
CUST_46515_PI429285431	0.8989423	A	0.8909805	A	1.00553395529438	0	lncRNA	50706-1_{1..2335}	"gi|375151553|ref|NR_046313.1| Homo sapiens cholinergic receptor, nicotinic, alpha 3 (neuronal) (CHRNA3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375151553|ref|NR_046313.1| Homo sapiens cholinergic receptor, nicotinic, alpha 3 (neuronal) (CHRNA3), transcript variant 3, non-coding RNA"	Chr15	 78885394	 78887728	-	1136	NR_046313.1	NA	NA	NA	"hg19_refFlat_CHRNA5:range=chr15:78858062-788855955'pad=0,hg19_refFlat_CHRNA5:range=chr15:78858062-788855955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40"	NA	inter
CUST_49809_PI429285431	0.9027566	A	0.90430474	A	0.998927486677864	0	lncRNA	53565-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00025928 range=chr7:63466642-63478469 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025928 range=chr7:63466642-63478469 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 63466642	 63469641	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80"	NA	inter
CUST_44976_PI429285431	9.379893	P	8.52155	P	1.81295485437947	0	lncRNA	49486-2_{3001..3645}	"gi|395394002|ref|NR_003580.2| Homo sapiens general transcription factor II, i, pseudogene (LOC100093631), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|395394002|ref|NR_003580.2| Homo sapiens general transcription factor II, i, pseudogene (LOC100093631), non-coding RNA"	NW_003871064.1	   687160	   687804	+	100093631	NR_003580.2	NA	NA	NA	NA	NA	Unknown
CUST_3965_PI429285431	2.2500725	A	2.084846	A	1.12134211249515	0	lncRNA	3935-1_{1..788}	"transcript_id ""ENST00000524942.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000524942.1"" | genecode_v17"	chr11	 61844749	 61845536	-	ENSG00000255553.1	ENST00000524942.1	RP11-810P12.5	RP11-810P12.5-001	NA	NA	NA	inter
CUST_9139_PI429285431	1.9836931	A	1.8280507	A	1.11391751049701	0	lncRNA	10657-2_{3001..4593}	lnc-SLC25A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A2-1:1	chr5	140625639	140627231	-	lnc-SLC25A2-1	lnc-SLC25A2-1:1	ENSG00000251462	ENST00000503443	PCDHB1	"hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PCDHGA8:range=chr5:140772381-1407748435'pad=0,hg19_refFlat_PCDHGA8:range=chr5:140772381-1407748435'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_PCDHGA2:range=chr5:140718539-1408907405'pad=0,hg19_refFlat_PCDHGA2:range=chr5:140718539-1408907405'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PCDHGA3:range=chr5:140723601-1407260905'pad=0,hg19_refFlat_PCDHGA3:range=chr5:140723601-1407260905'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PCDHGA3:range=chr5:140723601-1408907405'pad=0,hg19_refFlat_PCDHGA3:range=chr5:140723601-1408907405'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PCDHGA6:range=chr5:140753651-1407561075'pad=0,hg19_refFlat_PCDHGA6:range=chr5:140753651-1407561075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_PCDHGA12:range=chr5:140810327-1408907405'pad=0,hg19_refFlat_PCDHGA12:range=chr5:140810327-1408907405'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_PCDHGA6:range=chr5:140753651-1408907405'pad=0,hg19_refFlat_PCDHGA6:range=chr5:140753651-1408907405'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PCDHGA12:range=chr5:140810327-1408127895'pad=0,hg19_refFlat_PCDHGA12:range=chr5:140810327-1408127895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.83;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.20;hg19_refFlat_PCDHGA1:range=chr5:140710252-1407127235'pad=0,hg19_refFlat_PCDHGA1:range=chr5:140710252-1407127235'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PCDHGA1:range=chr5:140710252-1408907405'pad=0,hg19_refFlat_PCDHGA1:range=chr5:140710252-1408907405'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_PCDHGA8:range=chr5:140772381-1408907405'pad=0,hg19_refFlat_PCDHGA8:range=chr5:140772381-1408907405'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_PCDHGA2:range=chr5:140718539-1407210105'pad=0,hg19_refFlat_PCDHGA2:range=chr5:140718539-1407210105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60chr5:140612639-140627802"	NA	inter
CUST_29682_PI429285431	1.0648172	A	0.9260362	A	1.10097445833462	0	lncRNA	31444-1_{1..741}	n333337|AY255573|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085522|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085522|5.2526500|-0.0595601	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333337|AY255573|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085522|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085522|5.2526500|-0.0595601	chr10	 95326622	 95327362	+	NA	NA	NA	NA	RBP4	NA	chr10:95351593-95357168	inner
CUST_553_PI429285431	2.0523524	A	2.1617599	A	0.92696868022035	0	lncRNA	545-1_{1..473}	"transcript_id ""ENST00000416349.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000416349.1"" | genecode_v17"	chr1	209320612	209321084	-	ENSG00000232537.1	ENST00000416349.1	RP11-385M4.1	RP11-385M4.1-001	NA	NA	NA	inter
CUST_38253_PI429285431	9.235055	P	8.357753	P	1.83693681116467	0	lncRNA	39311-1_{1..2506}	n381777|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pqf.2||0.4840810|-0.3487008	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381777|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pqf.2||0.4840810|-0.3487008	chr11	117039253	117041758	+	NA	NA	NA	NA	PAFAH1B2	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20chr11:117029253-117047610"	NA	inner
CUST_35131_PI429285431	3.33699	P	3.3479972	A	0.992399421945659	0	lncRNA	36533-1_{1..320}	n342099|AJ431619|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4581|NULL|-1.2051000|-0.4369090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342099|AJ431619|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4581|NULL|-1.2051000|-0.4369090	chr6	107036341	107036660	+	NA	NA	NA	NA	RTN4IP1	NA	chr6:107026341-107046646	inner
CUST_26854_PI429285431	1.0723071	A	1.1862485	A	0.924060105550441	0	lncRNA	28367-1_{1..548}	n323925|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055610|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055610|-1.1964300|-0.2490402	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323925|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055610|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055610|-1.1964300|-0.2490402	chrX	  1846239	  1846786	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007156	0.90845734	A	0.926391	A	0.987646275719125	0	lncRNA	XR_109055	XR_109055	XR_109055	NA	NA	LOC100506101	uncharacterized LOC100506101	ENST00000428160	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506101 (LOC100506101), miscRNA [XR_109055]"	chr11:5127417-5127358	hs|11p15.4	Agilent_HUMAN_G3V2	XR_109055	XR_109055	chr11	  5127358	  5127417	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_322_PI429201921	4.5948105	P	4.6139293	P	0.986835280715373	0	lncRNA	215-3_{6001..7593}	TC13001141.hg.1	TCONS_l2_00007421-XLOC_l2_003764 // Broad TUCP // linc-C13orf34-9 chr13:+:67946518-67954108 // chr13 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00006899-XLOC_l2_003764 // Broad TUCP // linc-C13orf34-9 chr13:+:67949009-67954112 // chr13 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr13:+:67946518-67954108	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00007421-XLOC_l2_003764	linc-C13orf34-9	chr13	 67946518	 67954108	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20548_PI429285431	3.8734837	P	3.7749753	P	1.07066593037488	0	lncRNA	22189-1_{1..515}	lnc-CENPM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CENPM-1:1	chr22	 42378152	 42378666	-	lnc-CENPM-1	lnc-CENPM-1:1	ENSG00000224883.1	CTA-250D10.19	3-Sep	"hg19_refFlat_SEPT3:range=chr22:42373069-423907605'pad=0,hg19_refFlat_SEPT3:range=chr22:42373069-423907605'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SEPT3:range=chr22:42373069-423929715'pad=0,hg19_refFlat_SEPT3:range=chr22:42373069-423929715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20chr22:42372931-42388221"	NA	inner
CUST_1571_PI429285431	0.89810616	A	0.91162026	A	0.990676475801023	0	lncRNA	1559-1_{1..573}	"transcript_id ""ENST00000414475.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414475.1"" | genecode_v17"	chr3	177919838	177920410	-	ENSG00000223930.1	ENST00000414475.1	RP11-33A14.1	RP11-33A14.1-003	NA	NA	NA	inter
CUST_20680_PI429285431	0.8903949	A	1.3330766	A	0.735765686083564	0	lncRNA	22317-1_{1..697}	lnc-TMEM232-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TMEM232-1:1	chr5	110344573	110345269	-	lnc-TMEM232-1	lnc-TMEM232-1:1	ENSG00000248428.1	CTC-551A13.1	NA	NA	NA	inter
CUST_37956_PI429285431	3.8902233	P	4.0243506	P	0.911220873113914	0	lncRNA	39046-1_{1..523}	n346505|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2055|NULL|-1.4126700|-0.1892639	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346505|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2055|NULL|-1.4126700|-0.1892639	chr2	  1550300	  1550822	-	NA	NA	NA	NA	TPO	NA	chr2:1540300-1546499	inter
CUST_44785_PI429285431	1.0823665	A	0.9143005	A	1.12355130175947	0	lncRNA	49324-1_{1..590}	"gi|397139148|ref|XR_158798.1| PREDICTED: Homo sapiens uncharacterized LOC100506926, transcript variant 2 (LOC100506926), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139148|ref|XR_158798.1| PREDICTED: Homo sapiens uncharacterized LOC100506926, transcript variant 2 (LOC100506926), misc_RNA"	NA	NA	NA	NA	NA	XR_158798.1	NA	NA	NA	NA	NA	Unknown
CUST_5693_PI429285431	9.728074	P	9.806789	P	0.946900670097606	0	lncRNA	5617-1_{1..555}	"transcript_id ""ENST00000566427.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566427.1"" | genecode_v17"	chr16	 89323587	 89324141	-	ENSG00000260637.1	ENST00000566427.1	RP11-46C24.5	RP11-46C24.5-001	ANKRD11	NA	chr16:89334035-89343938	inter
CUST_35837_PI429285431	2.2150924	A	3.1454868	P	0.524714877093341	0	lncRNA	37238-2_{3001..6000}	n344509|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_57|NULL|-1.4764100|-0.3572130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344509|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_57|NULL|-1.4764100|-0.3572130	chr18	 37089725	 37092724	+	NA	NA	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60"	NA	inter
CUST_25772_PI429285431	6.559931	P	6.7616706	P	0.869501487055393	0	lncRNA	27297-1_{1..508}	lnc-SPINK4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPINK4-1:2	chr9	 33179323	 33179830	+	lnc-SPINK4-1	lnc-SPINK4-1:2	ENSG00000233554.1	RP11-326F20.5	NA	"hg19_refFlat_B4GALT1:range=chr9:33113452-331671675'pad=0,hg19_refFlat_B4GALT1:range=chr9:33113452-331671675'pad=0 3'pad=0 strand=- repeatMasking=none,-101.50"	NA	inter
CUST_15876_PI429285431	1.6001976	A	1.5439805	A	1.03973588520193	0	lncRNA	17567-1_{1..326}	lnc-HNRNPA2B1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HNRNPA2B1-2:3	chr7	 26170211	 26170536	-	lnc-HNRNPA2B1-2	lnc-HNRNPA2B1-2:3	XLOC_006385	linc-NPVF-1	NA	NA	NA	inter
CUST_12565_PI429285431	0.8955613	A	0.8958485	A	0.999800947943233	0	lncRNA	14174-1_{1..692}	lnc-FMN1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FMN1-2:2	chr15	 33539670	 33540361	-	lnc-FMN1-2	lnc-FMN1-2:2	XLOC_011417	linc-FMN1-4	LOC100652857	NA	chr15:33533735-33538807	inter
CUST_3427_PI429285431	1.6751894	A	2.8103683	A	0.45527845693173	0	lncRNA	3398-1_{1..1605}	"transcript_id ""ENST00000604870.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604870.1"" | genecode_v17"	chr9	 70943228	 70944832	+	ENSG00000234394.3	ENST00000604870.1	RP11-561O23.5	RP11-561O23.5-005	PGM5	NA	chr9:70971815-71030316	inner
CUST_5027_PI429285431	0.90994865	A	1.7954941	A	0.541282837410486	0	lncRNA	4967-1_{1..823}	"transcript_id ""ENST00000423708.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423708.3"" | genecode_v17"	chr14	101426846	101427668	+	ENSG00000232018.4	ENST00000423708.3	AL132709.8	AL132709.8-001	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
CUST_27647_PI429285431	1.4456143	A	1.3638204	A	1.05833319309937	0	lncRNA	29225-1_{1..441}	n324853|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171134|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171134|-0.9766280|-0.2850344	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324853|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171134|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171134|-0.9766280|-0.2850344	chr21	 25232615	 25233055	-	NA	NA	NA	NA	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-29.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70"	NA	inter
CUST_18344_PI429285431	1.0733085	A	1.3297796	A	0.837133084064594	0	lncRNA	20073-1_{1..418}	lnc-TLX1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TLX1-2:5	chr10	103029725	103030142	+	lnc-TLX1-2	lnc-TLX1-2:5	ENSG00000227128	RP11-107I14.1	NA	NA	NA	inter
CUST_23784_PI429285431	1.0398555	A	1.399221	A	0.779507333078465	0	lncRNA	25349-1_{1..537}	lnc-SMTNL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMTNL2-2:1	chr17	  4474622	  4475158	+	lnc-SMTNL2-2	lnc-SMTNL2-2:1	ENSG00000262921.1	RP11-141J13.3	SMTNL2	NA	chr17:4475302-4485055	inter
CUST_47087_PI429285431	12.443104	P	12.640172	P	0.872321588788775	0	lncRNA	51169-1_{1..2033}	"gi|299829235|ref|NR_033899.1| Homo sapiens golgin A2 pseudogene (LOC440518), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|299829235|ref|NR_033899.1| Homo sapiens golgin A2 pseudogene (LOC440518), non-coding RNA"	Chr19	 22779059	 22781091	+	440518	NR_033899.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002424	0.89589953	A	0.9012701	A	0.996284324815172	0	lncRNA	TCONS_00004213	NA	NA	NA	NA	XLOC_002055	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002055), lincRNA [TCONS_00004213]"	chr2:39010839-39010780	hs|2p22.1	Agilent_HUMAN_G3V2	TCONS_00004213	TCONS_00004213	chr2	 39010780	 39010839	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23168_PI429285431	0.9219623	A	1.8429022	A	0.528164814584367	0	lncRNA	24739-1_{1..325}	lnc-ENPP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ENPP2-1:1	chr8	120474527	120474851	-	lnc-ENPP2-1	lnc-ENPP2-1:1	ENSG00000253398.1	RP11-775B15.2	NA	NA	NA	inter
CUST_49470_PI429285431	0.8951025	A	2.3954325	A	0.353472528544925	0	lncRNA	53265-1_{1..366}	hg19_lincRNAsTranscripts_TCONS_l2_00024972 range=chr6:147283608-147429706 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024972 range=chr6:147283608-147429706 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	147283608	147283973	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3509_PI429285431	0.8886996	A	0.9024093	A	0.990542169396889	0	lncRNA	3480-1_{1..371}	"transcript_id ""ENST00000430534.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430534.1"" | genecode_v17"	chr9	109346423	109346793	-	ENSG00000229297.1	ENST00000430534.1	RP11-540H22.2	RP11-540H22.2-001	NA	NA	NA	inter
CUST_33290_PI429285431	1.0658568	A	1.5461962	A	0.716808971883033	0	lncRNA	34873-1_{1..924}	n340001|AF090888|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2454|NULL|-1.0844000|-0.4311000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340001|AF090888|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2454|NULL|-1.0844000|-0.4311000	chr10	 27044552	 27045475	+	NA	NA	NA	NA	PDSS1	"hg19_refFlat_ABI1:range=chr10:27037499-271497925'pad=0,hg19_refFlat_ABI1:range=chr10:27037499-271497925'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60chr10:27034552-27035727"	NA	inner
LNCA_21_P0001588	0.8908007	A	0.89394563	A	0.997822474892531	0	lncRNA	TCONS_00001700	NA	NA	NA	NA	XLOC_001061	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001061), lincRNA [TCONS_00001700]"	chr1:159749037-159748339	hs|1q23.2	Agilent_HUMAN_G3V2	TCONS_00001700	TCONS_00001700	chr1	159748339	159749037	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43082_PI429285431	2.6892161	A	2.7439618	A	0.962764132007066	0	lncRNA	47276-1_{1..126}	ENST00000408460 ncrna:snRNA chromosome:GRCh37:8:103433425:103433550:1 gene:ENSG00000221387 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408460 ncrna:snRNA chromosome:GRCh37:8:103433425:103433550:1 gene:ENSG00000221387 gene_biotype:snRNA transcript_biotype:snRNA	chr8	103433425	103433550	+	ENSG00000221387	ENST00000408460	NA	NA	UBR5	NA	chr8:103423425-103424917	inter
CUST_23589_PI429285431	0.8928855	A	1.1136931	A	0.858084958310602	0	lncRNA	25156-1_{1..589}	lnc-OR5P3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR5P3-1:4	chr11	  7904407	  7904995	-	lnc-OR5P3-1	lnc-OR5P3-1:4	ENSG00000254951.2	RP11-494M8.4	NA	NA	NA	inter
LNCA_21_P0002462	2.0115223	A	0.8903725	A	2.1752026287726	0	lncRNA	TCONS_00004314	NA	NA	NA	NA	XLOC_002169	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002169), lincRNA [TCONS_00004314]"	chr2:75057131-75050011	hs|2p12	Agilent_HUMAN_G3V2	TCONS_00004314	TCONS_00004314	chr2	 75050011	 75057131	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47404_PI429285431	2.8610718	A	3.428633	P	0.674756465154038	0	lncRNA	51447-1_{1..2260}	"gi|310124075|ref|XR_109680.1| PREDICTED: Homo sapiens LRRC3 downstream neighbor (non-protein coding) (LRRC3DN), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124075|ref|XR_109680.1| PREDICTED: Homo sapiens LRRC3 downstream neighbor (non-protein coding) (LRRC3DN), misc_RNA"	Chr21	 45878827	 45881086	+	54083	XR_109680.2	NA	NA	NA	NA	NA	inter
CUST_43198_PI429285431	1.6338664	A	1.1187327	A	1.42912657616342	0	lncRNA	48012-1_{1..382}	ENST00000596971 havana:sense_intronic chromosome:GRCh37:11:62575154:62575535:-1 gene:ENSG00000269463 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000596971 havana:sense_intronic chromosome:GRCh37:11:62575154:62575535:-1 gene:ENSG00000269463 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr11	 62575154	 62575535	-	ENSG00000269463	ENST00000596971	NA	NA	NXF1	NA	chr11:62565154-62572964	inner
CUST_48648_PI429285431	1.5847479	A	1.9711181	A	0.765052045005813	0	lncRNA	52495-1_{1..860}	hg19_lincRNAsTranscripts_TCONS_l2_00013788 range=chr2:91954929-91963107 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013788 range=chr2:91954929-91963107 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 91954929	 91955788	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2530_PI429285431	0.89063054	A	0.9198526	A	0.979948569791569	0	lncRNA	2518-1_{1..403}	"transcript_id ""ENST00000417465.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417465.1"" | genecode_v17"	chr6	 41836360	 41836762	+	ENSG00000227516.1	ENST00000417465.1	RP5-973N23.4	RP5-973N23.4-001	USP49	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10chr6:41826360-41847469"	NA	inner
CUST_24593_PI429285431	7.8450484	P	7.810517	P	1.02422409203243	0	lncRNA	26142-1_{1..539}	lnc-C22orf31-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C22orf31-2:1	chr22	 29507569	 29508107	-	lnc-C22orf31-2	lnc-C22orf31-2:1	ENSG00000226772.1	CTA-747E2.10	KREMEN1	NA	chr22:29497569-29517671	inner
CUST_10055_PI429285431	5.0948586	P	5.3230033	P	0.853732082137599	0	lncRNA	11581-1_{1..254}	lnc-FAAH2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAAH2-2:2	chrX	 57154177	 57154430	+	lnc-FAAH2-2	lnc-FAAH2-2:2	XLOC_007996	linc-FAAH2-2	SPIN2B	NA	chrX:57146115-57147979	inter
LNCA_21_P0006871	3.5349932	P	3.8343613	P	0.812608240589068	0	lncRNA	TCONS_00018199	NA	NA	NA	NA	XLOC_008481	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008481), lincRNA [TCONS_00018199]"	chr10:48117893-48117952	hs|10q11.22	Agilent_HUMAN_G3V2	TCONS_00018199	TCONS_00018199	chr10	 48117893	 48117952	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20984_PI429285431	6.1349535	P	6.3189855	P	0.880239489009976	0	lncRNA	22613-1_{1..721}	lnc-TRIM63-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM63-1:2	chr1	 26498108	 26498828	-	lnc-TRIM63-1	lnc-TRIM63-1:2	ENSG00000236782.1	RP11-96L14.7	CNKSR1	"hg19_refFlat_ZNF593:range=chr1:26496475-264972075'pad=0,hg19_refFlat_ZNF593:range=chr1:26496475-264972075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50chr1:26503981-26508229"	NA	inter
CUST_35548_PI429285431	2.2894802	A	2.1704786	A	1.08598306071538	0	lncRNA	36962-1_{1..967}	n342672|AL136790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5174|NULL|-1.0482700|-0.1865828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342672|AL136790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5174|NULL|-1.0482700|-0.1865828	chr17	 20433354	 20434320	-	NA	NA	NA	NA	CDRT15L2	NA	chr17:20423354-20444194	inter
CUST_27292_PI429285431	0.9049887	A	0.91229177	A	0.994950688468358	0	lncRNA	28849-1_{1..589}	n324442|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041660|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041660|-1.2691200|-0.3249218	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324442|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041660|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041660|-1.2691200|-0.3249218	chr6	106167234	106167822	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13261_PI429285431	3.8436646	P	4.2966895	P	0.730509581032687	0	lncRNA	14891-1_{1..292}	lnc-SPAM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPAM1-1:1	chr7	123564159	123564450	+	lnc-SPAM1-1	lnc-SPAM1-1:1	XLOC_006226	linc-SPAM1	SPAM1	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50chr7:123565286-123574184"	NA	inter
CUST_52194_PI429285431	0.9082805	A	2.1558368	A	0.421160984697987	0	lncRNA	55710-1_{1..609}	hg19_lincRNAsTranscripts_TCONS_l2_00017672 range=chr22:25906562-25917493 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017672 range=chr22:25906562-25917493 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 25906562	 25907170	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51307_PI429285431	3.9331331	P	3.4526644	P	1.39519686161236	0	lncRNA	54911-1_{1..718}	hg19_lincRNAsTranscripts_TCONS_l2_00009012 range=chr15:34683608-34720824 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009012 range=chr15:34683608-34720824 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 34683608	 34684325	-	NA	NA	NA	NA	GOLGA8A	NA	chr15:34673608-34729667	inter
CUST_45529_PI429285431	1.6024778	A	1.7531147	A	0.900852679489646	0	lncRNA	49937-1_{1..1960}	"gi|393281727|ref|NR_072992.1| Homo sapiens enkurin, TRPC channel interacting protein (ENKUR), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393281727|ref|NR_072992.1| Homo sapiens enkurin, TRPC channel interacting protein (ENKUR), transcript variant 3, non-coding RNA"	Chr10	 25270908	 25272867	-	219670	NR_072992.1	NA	NA	NA	NA	NA	inter
CUST_30163_PI429285431	4.4578915	P	4.649289	P	0.875756987999094	0	lncRNA	31937-1_{1..205}	n334839|AJ306428|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246932|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246932|1.5040700|-0.0742116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334839|AJ306428|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246932|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246932|1.5040700|-0.0742116	chrX	 70357037	 70357241	+	NA	NA	NA	NA	NLGN3	NA	chrX:70364681-70367242	inner
CUST_18664_PI429285431	6.2077727	P	6.250742	P	0.970655124720475	0	lncRNA	20366-1_{1..410}	lnc-ATG7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATG7-2:1	chr3	 11770020	 11770429	+	lnc-ATG7-2	lnc-ATG7-2:1	ENSG00000224386	AC090939.2	VGLL4	NA	chr3:11760020-11762220	inter
CUST_21269_PI429285431	2.0964613	A	2.0986288	A	0.99849873151879	0	lncRNA	22894-1_{1..345}	lnc-SLC16A3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC16A3-4:1	chr17	 80118267	 80118611	+	lnc-SLC16A3-4	lnc-SLC16A3-4:1	ENSG00000266654.1	RP11-1376P16.1	CCDC57	NA	chr17:80108267-80128328	inner
CUST_14441_PI429285431	1.9643381	A	2.4827178	A	0.698155495913881	0	lncRNA	16103-1_{1..324}	lnc-FCGR3B-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FCGR3B-4:2	chr1	161735620	161735943	-	lnc-FCGR3B-4	lnc-FCGR3B-4:2	XLOC_001070	linc-FCGR3B-3	ATF6	NA	chr1:161736084-161745766	inter
CUST_47606_PI429285431	2.670516	A	2.9564	A	0.820238859910749	0	lncRNA	51607-3_{6001..9000}	"gi|383087740|ref|NR_001564.2| Homo sapiens X (inactive)-specific transcript (non-protein coding) (XIST), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|383087740|ref|NR_001564.2| Homo sapiens X (inactive)-specific transcript (non-protein coding) (XIST), non-coding RNA"	ChrX	 73046486	 73049485	-	7503	NR_001564.2	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_41608_PI429285431	5.278081	P	5.83027	P	0.681984568323567	0	lncRNA	42969-1_{1..90}	ENST00000362286 ncrna:miRNA chromosome:GRCh37:15:64163129:64163218:-1 gene:ENSG00000199156 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362286 ncrna:miRNA chromosome:GRCh37:15:64163129:64163218:-1 gene:ENSG00000199156 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 64163129	 64163218	-	ENSG00000199156	ENST00000362286	NA	NA	NA	NA	NA	inter
LNCA_21_P0014647	0.8954498	A	2.1006184	A	0.433718654250805	0	lncRNA	XR_110892	XR_110892	XR_110892	NA	NA	LOC100506045	uncharacterized LOC100506045	NA	THC2615454	NA	"PREDICTED: Homo sapiens hypothetical LOC100506045 (LOC100506045), miscRNA [XR_110892]"	chr11:72672969-72673028	hs|11q13.4	Agilent_HUMAN_G3V2	XR_110892	XR_110892	chr11	 72672969	 72673028	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010104	0.89568675	A	0.89360607	A	1.00144325797142	0	lncRNA	TCONS_00028606	NA	NA	NA	NA	XLOC_013643	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013643), lincRNA [TCONS_00028606]"	chr20:5466794-5466735	hs|20p12.3	Agilent_HUMAN_G3V2	TCONS_00028606	TCONS_00028606	chr20	  5466735	  5466794	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13484_PI429285431	2.5864046	A	3.1287906	P	0.686634379803868	0	lncRNA	15122-1_{1..741}	lnc-EXD2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXD2-1:2	chr14	 69447943	 69448683	+	lnc-EXD2-1	lnc-EXD2-1:2	XLOC_010859	linc-EXD2-1	ACTN1	NA	chr14:69437943-69446083	inter
CUST_27467_PI429285431	2.6683266	A	2.1063743	A	1.47626559492865	0	lncRNA	29039-1_{1..3000}	n324645|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317428|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317428|-0.8744860|-0.2404222	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324645|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317428|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317428|-0.8744860|-0.2404222	chr22	 48497704	 48500703	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2706_PI429285431	5.8668942	P	5.5964074	P	1.20621476489982	0	lncRNA	2691-1_{1..2044}	"transcript_id ""ENST00000535229.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535229.1"" | genecode_v17"	chr6	166193757	166195800	-	ENSG00000256956.2	ENST00000535229.1	RP11-252P19.3	RP11-252P19.3-001	NA	NA	NA	inter
CUST_35770_PI429285431	0.90480685	A	0.90730834	A	0.998267601596764	0	lncRNA	37187-1_{1..1269}	n344457|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_5|NULL|-1.3612400|-0.3095926	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344457|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_5|NULL|-1.3612400|-0.3095926	chr15	 93426074	 93427342	+	NA	NA	NA	NA	CHD2	NA	chr15:93443551-93451321	inter
LNCA_21_P0005113	0.896935	A	0.8949125	A	1.00140287328006	0	lncRNA	TCONS_00012469	NA	NA	NA	NA	XLOC_005254	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005254), lincRNA [TCONS_00012469]"	chr6:32361094-32361244	hs|6p21.32	Agilent_HUMAN_G3V2	TCONS_00012469	TCONS_00012469	chr6	 32361094	 32361244	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30565_PI429285431	0.88607913	A	1.368287	A	0.715881215779043	0	lncRNA	32346-1_{1..223}	n335767|X07061|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321237_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321237_03|-0.8827510|-0.3141956	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335767|X07061|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321237_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321237_03|-0.8827510|-0.3141956	chr6	  2529778	  2530000	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4464_PI429285431	1.0554638	A	0.9012564	A	1.1128100852457	0	lncRNA	4414-1_{1..2256}	"transcript_id ""ENST00000539391.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539391.1"" | genecode_v17"	chr12	124690774	124693029	+	ENSG00000256596.1	ENST00000539391.1	RP11-522N14.2	RP11-522N14.2-001	ZNF664-FAM101A	NA	chr12:124680774-124703564	inner
LNCA_21_P0008427	0.8968674	A	0.8948945	A	1.0013684455408	0	lncRNA	ENST00000553386	NA	NA	NA	NA	XLOC_011007	NA	ENST00000553386	THC2662887	NA	"BROAD Institute lincRNA (XLOC_011007), lincRNA [TCONS_00022728]"	chr14:44936284-44936225	hs|14q21.2	Agilent_HUMAN_G3V2	ENST00000553386	ENST00000553386	chr14	 44936225	 44936284	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26994_PI429285431	8.098353	P	8.361969	P	0.832997459074656	0	lncRNA	28521-1_{1..931}	n324094|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000037007|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000037007|-0.9327130|-0.1652444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324094|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000037007|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000037007|-0.9327130|-0.1652444	chr9	 45048387	 45049317	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3018_PI429285431	3.1976936	P	3.0091214	A	1.13963528839753	0	lncRNA	2997-1_{1..389}	"transcript_id ""ENST00000517369.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517369.1"" | genecode_v17"	chr8	 15830824	 15831212	+	ENSG00000253648.1	ENST00000517369.1	RP11-77B22.2	RP11-77B22.2-001	NA	NA	NA	inter
CUST_35603_PI429285431	5.5788307	P	5.3560247	P	1.16700116397504	0	lncRNA	37016-1_{1..849}	n342740|U63836|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5243|NULL|2.4339400|-0.0424520	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342740|U63836|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5243|NULL|2.4339400|-0.0424520	chr11	  1265010	  1265858	+	NA	NA	NA	NA	MUC5B	NA	chr11:1255010-1279543	inner
CUST_21367_PI429285431	0.887522	A	0.8925794	A	0.996500614619789	0	lncRNA	22990-1_{1..401}	lnc-TOR1AIP2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TOR1AIP2-2:2	chr1	179786503	179786903	-	lnc-TOR1AIP2-2	lnc-TOR1AIP2-2:2	ENSG00000229407.1	RP11-12M5.3	FAM163A	NA	chr1:179776503-179785333	inter
CUST_49616_PI429285431	1.1276398	A	0.90569013	A	1.16630868112026	0	lncRNA	53404-1_{1..278}	hg19_lincRNAsTranscripts_TCONS_l2_00027009 range=chr7:156233930-156263981 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027009 range=chr7:156233930-156263981 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	156233930	156234207	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49218_PI429285431	0.9025129	A	0.9156585	A	0.99092955139786	0	lncRNA	53038-1_{1..1373}	hg19_lincRNAsTranscripts_TCONS_l2_00020917 range=chr4:183938593-183957246 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020917 range=chr4:183938593-183957246 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	183938593	183939965	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_683_PI429285431	5.794347	P	5.7958	P	0.998993364144789	0	lncRNA	676-1_{1..682}	"transcript_id ""ENST00000591450.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591450.1"" | genecode_v17"	chr2	  6757836	  6758517	-	ENSG00000236172.2	ENST00000591450.1	AC097517.2	AC097517.2-041	NA	NA	NA	inter
CUST_21288_PI429285431	5.126659	P	5.403311	P	0.825504508749415	0	lncRNA	22913-1_{1..509}	lnc-HAO2-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HAO2-2:6	chr1	119689576	119690084	+	lnc-HAO2-2	lnc-HAO2-2:6	ENSG00000231365.1	RP11-418J17.1	WARS2	NA	chr1:119679576-119683295	inter
CUST_33822_PI429285431	0.88655883	A	1.6055028	A	0.607541990624813	0	lncRNA	35370-1_{1..2018}	n340608|AK127975|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3070|NULL|-1.2605500|-0.3752536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340608|AK127975|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3070|NULL|-1.2605500|-0.3752536	chr5	126409278	126411295	+	NA	NA	NA	NA	C5orf63	NA	chr5:126399278-126409184	inter
CUST_49825_PI429285431	1.9396706	A	1.7847162	A	1.11338642629833	0	lncRNA	53583-1_{1..214}	hg19_lincRNAsTranscripts_TCONS_l2_00025959 range=chr7:64563609-64566941 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025959 range=chr7:64563609-64566941 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 64563609	 64563822	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27667_PI429285431	0.8925351	A	0.8965577	A	0.997215629720944	0	lncRNA	29245-1_{1..530}	n324874|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171059|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171059|-1.2807800|-0.3583193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324874|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171059|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171059|-1.2807800|-0.3583193	chr21	 22227505	 22228034	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20621_PI429285431	1.1439261	A	1.1419337	A	1.00138198049871	0	lncRNA	22260-1_{1..794}	lnc-GLDN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-GLDN-1:1	chr15	 51613806	 51614599	+	lnc-GLDN-1	lnc-GLDN-1:1	ENSG00000259306.1	RP11-108K3.2	CYP19A1	NA	chr15:51603806-51624193	inner
CUST_42319_PI429285431	0.9270977	A	0.9918416	A	0.956115027282609	0	lncRNA	44952-1_{1..127}	ENST00000390991 ncrna:snoRNA chromosome:GRCh37:13:32994527:32994653:-1 gene:ENSG00000212293 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390991 ncrna:snoRNA chromosome:GRCh37:13:32994527:32994653:-1 gene:ENSG00000212293 gene_biotype:snoRNA transcript_biotype:snoRNA	chr13	 32994527	 32994653	-	ENSG00000212293	ENST00000390991	NA	NA	N4BP2L1	NA	chr13:32984527-33002315	inner
CUST_8747_PI429285431	1.775633	A	0.9021827	A	1.83203910730121	0	lncRNA	10289-1_{1..1248}	lnc-ASPHD1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ASPHD1-1:2	chr16	 29940462	 29941709	+	lnc-ASPHD1-1	lnc-ASPHD1-1:2	ENSG00000247735	AC120114.3	KCTD13	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70chr16:29930462-29937545"	NA	inter
CUST_48135_PI429285431	1.3118489	A	0.9315785	A	1.30158578489755	0	lncRNA	52003-1_{1..1151}	"gi|341913771|ref|XR_132979.1| PREDICTED: Homo sapiens uncharacterized LOC100653275 (LOC100653275), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341913771|ref|XR_132979.1| PREDICTED: Homo sapiens uncharacterized LOC100653275 (LOC100653275), misc_RNA"	NA	NA	NA	NA	NA	XR_132979.1	NA	NA	NA	NA	NA	Unknown
CUST_29854_PI429285431	1.3829253	A	0.92290944	A	1.37555693998638	0	lncRNA	31617-1_{1..374}	n333760|L09093|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191954|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191954|2.3192700|-0.0196367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333760|L09093|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191954|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191954|2.3192700|-0.0196367	chr2	 89160396	 89160769	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_220_PI429201921	0.89947885	A	0.90856147	A	0.993724183275298	0	lncRNA	173-1_{1..3000}	TC02003455.hg.1	TCONS_00002717-XLOC_001600 // Rinn lincRNAs // linc-POU3F3-7 chr2:+:104669959-104675714 // chr2 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr2:+:104669959-104675714	NA	Affy_HUMAN_HTA2.0	TCONS_00002717-XLOC_001600	linc-POU3F3-7	chr2	104669959	104675714	+	NA	NA	NA	NA	TCEA3	NA	chr1:23707555-23715522	Unknown
CUST_34283_PI429285431	4.55966	P	2.4781728	A	4.23243291128621	0	lncRNA	35781-1_{1..1932}	n341142|AK091713|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3608|NULL|-1.3000500|-0.3728900	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341142|AK091713|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3608|NULL|-1.3000500|-0.3728900	chr11	121959812	121961743	-	NA	NA	NA	NA	BLID	NA	chr11:121986062-121986923	inter
CUST_4361_PI429285431	1.1488732	A	0.90583766	A	1.18348017577763	0	lncRNA	4316-1_{1..540}	"transcript_id ""ENST00000605051.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605051.1"" | genecode_v17"	chr12	 89765597	 89766136	+	ENSG00000271259.1	ENST00000605051.1	RP11-1109F11.5	RP11-1109F11.5-001	NA	NA	NA	inter
CUST_32888_PI429285431	4.2415853	P	4.6824284	P	0.736703958637927	0	lncRNA	34515-1_{1..1893}	n339555|BC034792|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1997|NULL|-1.2440600|-0.2321536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339555|BC034792|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1997|NULL|-1.2440600|-0.2321536	chr20	  2081658	  2083550	-	NA	NA	NA	NA	STK35	"hg19_refFlat_STK35:range=chr20:2082528-20980245'pad=0,hg19_refFlat_STK35:range=chr20:2082528-20980245'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.60chr20:2082528-2093525"	NA	inner
CUST_18968_PI429285431	0.90701395	A	0.9218395	A	0.989776332464095	0	lncRNA	20660-1_{1..1218}	lnc-ZNF131-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF131-1:1	chr5	 43044545	 43045762	+	lnc-ZNF131-1	lnc-ZNF131-1:1	ENSG00000215068	AC025171.1	C5orf39	NA	chr5:43039182-43040447	inter
CUST_33138_PI429285431	0.9154394	A	0.9116938	A	1.00259962526051	0	lncRNA	34734-1_{1..2299}	n339827|AK091683|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2274|NULL|13.1226000|-0.1105966	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339827|AK091683|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2274|NULL|13.1226000|-0.1105966	chr18	 31323847	 31326145	+	NA	NA	NA	NA	ASXL3	NA	chr18:31313847-31327399	inner
CUST_38899_PI429285431	5.778097	P	4.023229	P	3.37495437749838	0	lncRNA	39886-1_{1..2513}	n384927|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ojj.2||-1.1765900|-0.2873567	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384927|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ojj.2||-1.1765900|-0.2873567	chr6	 34247456	 34249968	-	NA	NA	NA	NA	NUDT3	NA	chr6:34254971-34259969	inter
CUST_23660_PI429285431	1.1292056	A	1.3511701	A	0.857397134110018	0	lncRNA	25225-1_{1..432}	lnc-ASB7-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASB7-3:1	chr15	100948772	100949203	+	lnc-ASB7-3	lnc-ASB7-3:1	ENSG00000259430.1	RP11-168G16.2	CERS3	NA	chr15:100940600-100958992	inner
LNCA_21_P0005261	0.9071948	A	0.9180548	A	0.992500682879846	0	lncRNA	ENST00000436379	XR_108820	XR_108820	NA	Hs.98247	XLOC_006255	NA	ENST00000436379	THC2617930	NA	"PREDICTED: Homo sapiens hypothetical LOC100506937 (LOC100506937), miscRNA [XR_108820]"	chr7:132445290-132445349	hs|7q32.3	Agilent_HUMAN_G3V2	ENST00000436379	ENST00000436379	chr7	132445290	132445349	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42642_PI429285431	4.17932	P	4.4018545	P	0.857058448649209	0	lncRNA	45522-1_{1..238}	ENST00000516989 ncrna:snoRNA chromosome:GRCh37:16:21598948:21599185:1 gene:ENSG00000252798 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516989 ncrna:snoRNA chromosome:GRCh37:16:21598948:21599185:1 gene:ENSG00000252798 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 21598948	 21599185	+	ENSG00000252798	ENST00000516989	NA	NA	NA	NA	NA	inter
CUST_21353_PI429285431	1.0887271	A	0.9042543	A	1.1364016252942	0	lncRNA	22977-1_{1..838}	lnc-PLEKHA3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLEKHA3-5:1	chr2	179638954	179639791	+	lnc-PLEKHA3-5	lnc-PLEKHA3-5:1	ENSG00000264993.1	RP11-88L24.3	TTN	"hg19_refFlat_TTN:range=chr2:179610312-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179610312-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30chr2:179628954-179649402"	NA	inner
CUST_48011_PI429285431	10.249736	P	11.377689	P	0.457564490319366	0	lncRNA	51895-1_{1..1836}	"gi|410173465|ref|XR_172229.1| PREDICTED: Homo sapiens uncharacterized LOC339192 (LOC339192), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173465|ref|XR_172229.1| PREDICTED: Homo sapiens uncharacterized LOC339192 (LOC339192), misc_RNA"	NA	NA	NA	NA	NA	XR_172229.1	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-62.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-60.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-63.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10"	NA	Unknown
CUST_19911_PI429285431	7.6938696	P	7.8752775	P	0.881842002582233	0	lncRNA	21566-1_{1..445}	lnc-BRF1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BRF1-2:1	chr14	105936652	105937096	-	lnc-BRF1-2	lnc-BRF1-2:1	ENSG00000257270.1	RP11-521B24.5	MTA1	NA	chr14:105926652-105937062	inner
CUST_2653_PI429285431	0.90321064	A	1.1659822	A	0.833485172871981	0	lncRNA	2639-1_{1..2293}	"transcript_id ""ENST00000447311.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000447311.1"" | genecode_v17"	chr6	142847592	142849884	-	ENSG00000236366.1	ENST00000447311.1	RP11-440G9.1	RP11-440G9.1-001	NA	NA	NA	inter
CUST_11746_PI429285431	0.89274323	A	0.8999973	A	0.994984481758197	0	lncRNA	13326-1_{1..379}	lnc-GREB1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GREB1-3:1	chr2	 11561297	 11561675	+	lnc-GREB1-3	lnc-GREB1-3:1	XLOC_001351	linc-GREB1-2	NA	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50"	NA	inter
CUST_1786_PI429285431	0.90523165	A	0.8890065	A	1.01130989567016	0	lncRNA	1772-1_{1..327}	"transcript_id ""ENST00000512546.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512546.1"" | genecode_v17"	chr4	 60018552	 60018878	+	ENSG00000249111.1	ENST00000512546.1	RP11-622J8.1	RP11-622J8.1-001	NA	NA	NA	inter
CUST_36511_PI429285431	9.361223	P	10.438771	P	0.473833465268067	0	lncRNA	37711-1_{1..1185}	n345012|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_561|NULL|-1.4584700|-0.3293997	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345012|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_561|NULL|-1.4584700|-0.3293997	chr8	 95908035	 95909219	+	NA	NA	NA	NA	CCNE2	NA	chr8:95898035-95907482	inter
CUST_40308_PI429285431	12.907648	P	12.459379	P	1.36440221294954	0	lncRNA	41111-1_{1..2256}	n408337|NR_029406|lncRNA|Homosapiens||RefGeneNoncode|NR_029406||1.3475200|-0.2621605	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n408337|NR_029406|lncRNA|Homosapiens||RefGeneNoncode|NR_029406||1.3475200|-0.2621605	chr17	 81174665	 81176920	+	NA	NA	NA	NA	NA	"hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90"	NA	inter
CUST_17148_PI429285431	3.8279839	P	4.017017	P	0.877193422902653	0	lncRNA	18856-1_{1..350}	lnc-CCR7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCR7-1:1	chr17	 38694740	 38695089	-	lnc-CCR7-1	lnc-CCR7-1:1	XLOC_012471	linc-TNS4	NA	NA	NA	inter
CUST_9176_PI429285431	4.4292207	P	4.937176	P	0.7032183879118	0	lncRNA	10693-1_{1..3000}	lnc-TMEM132D-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TMEM132D-3:10	chr12	130645202	130648201	-	lnc-TMEM132D-3	lnc-TMEM132D-3:10	ENSG00000250208	XLOC_010263	FZD10	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60chr12:130647004-130650285"	NA	inter
CUST_14240_PI429285431	2.9370515	P	2.6802008	A	1.19486754535114	0	lncRNA	15898-1_{1..511}	lnc-THAP4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THAP4-1:2	chr2	242492099	242492609	-	lnc-THAP4-1	lnc-THAP4-1:2	XLOC_002552	linc-STK25	BOK	NA	chr2:242498192-242502258	inter
CUST_28079_PI429285431	3.2475526	P	3.6379976	P	0.762894253074757	0	lncRNA	29699-1_{1..567}	n325348|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325415|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325415|1.2090800|-0.2097555	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325348|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325415|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325415|1.2090800|-0.2097555	chr2	 34462358	 34462924	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100130451:range=chr2:214142441-2141488025'pad=0,hg19_refFlat_LOC100130451:range=chr2:214142441-2141488025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60"	NA	inter
CUST_33649_PI429285431	1.2824355	A	0.88582975	A	1.31640713401128	0	lncRNA	35213-1_{1..1617}	n340412|AK021932|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2873|NULL|-0.8418390|-0.3000825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340412|AK021932|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2873|NULL|-0.8418390|-0.3000825	chr5	 15675992	 15677608	+	NA	NA	NA	NA	FBXL7	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-65.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr5:15665992-15687600"	NA	inner
CUST_11319_PI429285431	0.9027066	A	0.9038099	A	0.999235543061893	0	lncRNA	12882-1_{1..391}	lnc-LAMA4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LAMA4-1:1	chr6	112717504	112717894	-	lnc-LAMA4-1	lnc-LAMA4-1:1	XLOC_005807	linc-LAMA4-1	NA	NA	NA	inter
CUST_4015_PI429285431	2.3095877	A	2.8711948	A	0.677546985089413	0	lncRNA	3976-1_{1..538}	"transcript_id ""ENST00000529491.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000529491.1"" | genecode_v17"	chr11	 74921894	 74922431	-	ENSG00000255136.2	ENST00000529491.1	CTD-2562J17.4	CTD-2562J17.4-002	SLCO2B1	NA	chr11:74911894-74917445	inter
CUST_44980_PI429285431	7.313983	P	7.890882	P	0.670403227646164	0	lncRNA	49490-1_{1..1159}	"gi|356874775|ref|NR_045512.1| Homo sapiens Williams Beuren syndrome chromosome region 22 (WBSCR22), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|356874775|ref|NR_045512.1| Homo sapiens Williams Beuren syndrome chromosome region 22 (WBSCR22), transcript variant 4, non-coding RNA"	NW_003871064.1	  1212804	  1213962	+	114049	NR_045512.1	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-54.30;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60"	NA	Unknown
CUST_24772_PI429285431	13.327761	P	13.369262	P	0.971643509915627	0	lncRNA	26316-1_{1..778}	lnc-GABARAP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GABARAP-1:1	chr17	  7147870	  7148647	-	lnc-GABARAP-1	lnc-GABARAP-1:1	ENSG00000262526.1	CTD-2545G14.7	C17orf81	NA	chr17:7155372-7157956	inner
CUST_17660_PI429285431	0.8897321	A	1.0311549	A	0.906624592210745	0	lncRNA	19389-1_{1..1975}	lnc-RUNX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RUNX1-1:1	chr21	 37379619	 37381593	-	lnc-RUNX1-1	lnc-RUNX1-1:1	XLOC_014066	linc-RUNX1	SETD4	NA	chr21:37388340-37390899	inter
CUST_12502_PI429285431	0.88524574	A	1.5656314	A	0.623998445424679	0	lncRNA	14114-1_{1..3000}	lnc-SBDS-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SBDS-3:1	chr7	 66827964	 66830963	-	lnc-SBDS-3	lnc-SBDS-3:1	XLOC_006485	linc-SBDS-4	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-60.40;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.10"	NA	inter
CUST_18653_PI429285431	3.429606	P	3.8530853	P	0.745624256842985	0	lncRNA	20356-1_{1..545}	lnc-AL139008.2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AL139008.2-1:2	chr9	 33605009	 33605553	+	lnc-AL139008.2-1	lnc-AL139008.2-1:2	ENSG00000226562	RP11-255A11.21	NA	NA	NA	inter
CUST_28069_PI429285431	0.8787437	A	0.88006145	A	0.999087022320777	0	lncRNA	29688-1_{1..549}	n325336|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326080|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326080|-1.2797500|-0.4266076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325336|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326080|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326080|-1.2797500|-0.4266076	chr2	 40827130	 40827678	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50665_PI429285431	0.9145065	A	0.9226973	A	0.994338656221698	0	lncRNA	54340-1_{1..2820}	hg19_lincRNAsTranscripts_TCONS_l2_00003500 range=chr10:43014404-43047327 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003500 range=chr10:43014404-43047327 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 43014404	 43017223	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001542	5.1469326	P	4.920416	P	1.17000654479983	0	lncRNA	TCONS_00001576	NA	NA	NA	NA	XLOC_000911	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000911), lincRNA [TCONS_00001576]"	chr1:90227537-90226521	hs|1p22.2	Agilent_HUMAN_G3V2	TCONS_00001576	TCONS_00001576	chr1	 90226521	 90227537	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13058_PI429285431	2.2387056	A	2.3686893	A	0.913841775028726	0	lncRNA	14685-1_{1..806}	lnc-TMED5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMED5-1:3	chr1	 93811281	 93812086	-	lnc-TMED5-1	lnc-TMED5-1:3	XLOC_000918	linc-TMED5	DR1	NA	chr1:93811478-93821403	inter
CUST_40722_PI429285431	1.7619636	A	1.7945943	A	0.977635988914466	0	lncRNA	41456-2_{3001..3690}	n410287|NR_037177_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_8||-1.1720900|-0.3991698	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410287|NR_037177_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_8||-1.1720900|-0.3991698	chr6	  4322144	  4322833	+	NA	NA	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10"	NA	inter
CUST_49572_PI429285431	0.8873162	A	0.99492323	A	0.928126250684682	0	lncRNA	53362-1_{1..679}	hg19_lincRNAsTranscripts_TCONS_l2_00024921 range=chr6:134768596-134796392 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024921 range=chr6:134768596-134796392 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	134768596	134769274	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49878_PI429285431	0.89414954	A	0.88800526	A	1.00426797232056	0	lncRNA	53629-1_{1..835}	hg19_lincRNAsTranscripts_TCONS_l2_00026049 range=chr7:76634110-76641650 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026049 range=chr7:76634110-76641650 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 76634110	 76634944	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3300332	3.87434	P	4.7008286	P	0.563900059386604	0	lncRNA	XR_132708	XR_132708	XR_132708	   644093	NA	LOC644093	hCG2040054	ENST00000435331	THC2635576	NA	"PREDICTED: Homo sapiens hCG2040054 (LOC644093), miscRNA [XR_132708]"	chr2:47756244-47756303	hs|2p21	Agilent_HUMAN_G3V2	XR_132708	XR_132708	chr2	 47756244	 47756303	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34190_PI429285431	0.8892435	A	0.8830485	A	1.00430327941284	0	lncRNA	35705-1_{1..2404}	n341040|BC040894|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3506|NULL|-0.9368370|-0.1993357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341040|BC040894|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3506|NULL|-0.9368370|-0.1993357	chr11	 61355965	 61358368	+	NA	NA	NA	NA	SYT7	NA	chr11:61345965-61348298	inter
CUST_6630_PI429285431	5.344715	P	5.8926435	P	0.684001550244081	0	lncRNA	6576-1_{1..901}	"transcript_id ""ENST00000600157.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600157.1"" | genecode_v17"	chr20	  5414917	  5415817	-	ENSG00000226995.2	ENST00000600157.1	LINC00658	LINC00658-006	NA	NA	NA	inter
CUST_21125_PI429285431	5.2461667	P	5.3137865	P	0.954210984985485	0	lncRNA	22751-1_{1..528}	lnc-ANLN-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANLN-5:1	chr7	 37052955	 37053482	+	lnc-ANLN-5	lnc-ANLN-5:1	ENSG00000224101.1	ELMO1-AS1	ELMO1	"hg19_refFlat_ELMO1:range=chr7:36895156-373822945'pad=0,hg19_refFlat_ELMO1:range=chr7:36895156-373822945'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30chr7:37042955-37063235"	NA	inner
CUST_6748_PI429285431	0.9073046	A	0.904815	A	1.00172714902744	0	lncRNA	6696-1_{1..1918}	"transcript_id ""ENST00000583223.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000583223.1"" | genecode_v17"	chr20	 61172797	 61174714	+	ENSG00000264490.2	ENST00000583223.1	WI2-87327B8.1	WI2-87327B8.1-001	C20orf166	NA	chr20:61162797-61167971	inter
CUST_23872_PI429285431	8.73529	P	9.6967535	P	0.513535707657665	0	lncRNA	25432-1_{1..244}	lnc-MT1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MT1B-1:1	chr16	 56686483	 56686726	+	lnc-MT1B-1	lnc-MT1B-1:1	ENSG00000259923.1	RP11-249C24.11	MT1F	NA	chr16:56691855-56693215	inner
CUST_12546_PI429285431	3.854686	P	4.3394837	P	0.714597266299986	0	lncRNA	14157-1_{1..465}	lnc-NT5DC1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NT5DC1-4:1	chr6	115322754	115323218	+	lnc-NT5DC1-4	lnc-NT5DC1-4:1	XLOC_005442	linc-NT5DC1-2	NA	NA	NA	inter
CUST_26980_PI429285431	0.9039646	A	0.89962626	A	1.00301163402446	0	lncRNA	28506-1_{1..2078}	n324070|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052641|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052641|-1.2694600|-0.4993143	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324070|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052641|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052641|-1.2694600|-0.4993143	chr9	 74110171	 74112248	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006373	0.89045405	A	1.2038759	A	0.804730796600456	0	lncRNA	TCONS_00016706	NA	NA	NA	NA	XLOC_007577	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007577), lincRNA [TCONS_00016706]"	chr9:130921837-130921896	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_00016706	TCONS_00016706	chr9	130921837	130921896	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52000_PI429285431	0.89594215	A	0.8923699	A	1.00247916307076	0	lncRNA	55534-1_{1..259}	hg19_lincRNAsTranscripts_TCONS_l2_00017131 range=chr21:14823452-14824110 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017131 range=chr21:14823452-14824110 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 14823452	 14823710	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21814_PI429285431	0.88769186	A	0.88572955	A	1.00136109509416	0	lncRNA	23423-1_{1..2073}	lnc-PPIAL4B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPIAL4B-2:2	chr1	144520774	144522846	-	lnc-PPIAL4B-2	lnc-PPIAL4B-2:2	ENSG00000236943.1	AL592284.1	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10"	NA	inter
LNCA_21_P0008197	4.2306952	P	4.445833	P	0.861463872473368	0	lncRNA	TCONS_00022080	NA	NA	NA	NA	XLOC_010683	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010683), lincRNA [TCONS_00022080]"	chr13:88267598-88267539	hs|13q31.2	Agilent_HUMAN_G3V2	TCONS_00022080	TCONS_00022080	chr13	 88267539	 88267598	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005978	4.3064075	P	4.801241	P	0.709643572633439	0	lncRNA	TCONS_00015529	NA	NA	NA	NA	XLOC_007237	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007237), lincRNA [TCONS_00015529]"	chr8:137816917-137816858	hs|8q24.23	Agilent_HUMAN_G3V2	TCONS_00015529	TCONS_00015529	chr8	137816858	137816917	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49463_PI429285431	3.5799785	P	3.7466822	P	0.890875849464142	0	lncRNA	53259-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00024862 range=chr6:107165125-107235381 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024862 range=chr6:107165125-107235381 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	107168125	107171124	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50"	NA	inter
CUST_32272_PI429285431	0.8836731	A	0.8841196	A	0.999690557671037	0	lncRNA	33960-1_{1..2409}	n338850|AL110130|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1273|NULL|-1.0986600|-0.3223195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338850|AL110130|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1273|NULL|-1.0986600|-0.3223195	chr2	 55852072	 55854480	+	NA	NA	NA	NA	SMEK2	NA	chr2:55842072-55844796	inter
LNCA_21_P0012692	0.8961704	A	1.4926914	A	0.661346844849053	0	lncRNA	TCONS_l2_00021350	NA	NA	NA	NA	XLOC_l2_011309	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011309), lincRNA [TCONS_l2_00021350]"	chr4:150736753-150663872	hs|4q31.23	Agilent_HUMAN_G3V2	TCONS_l2_00021350	TCONS_l2_00021350	chr4	150663872	150736753	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3258_PI429285431	1.149575	A	2.2761145	A	0.458013015012243	0	lncRNA	3236-1_{1..445}	"transcript_id ""ENST00000520870.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520870.1"" | genecode_v17"	chr8	106838798	106839242	+	ENSG00000253526.1	ENST00000520870.1	RP11-152P17.3	RP11-152P17.3-001	NA	NA	NA	inter
CUST_9827_PI429285431	0.8832697	A	0.88605905	A	0.998068437783864	0	lncRNA	11348-1_{1..634}	lnc-ROBO2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ROBO2-5:2	chr3	 81043189	 81043822	+	lnc-ROBO2-5	lnc-ROBO2-5:2	XLOC_002717	linc-CADM2-7	NA	NA	NA	inter
CUST_29523_PI429285431	1.0960476	A	1.1858786	A	0.939632813115484	0	lncRNA	31281-1_{1..281}	n332980|AF110236|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000069629|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000069629|0.3869690|-0.3978616	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332980|AF110236|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000069629|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000069629|0.3869690|-0.3978616	chr2	183129090	183129370	-	NA	NA	NA	NA	PDE1A	NA	chr2:183119090-183387465	inner
CUST_8482_PI429285431	4.890614	P	4.803356	P	1.06234915150329	0	lncRNA	10046-1_{1..3000}	lnc-RGS3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGS3-1:1	chr9	116382056	116385055	+	lnc-RGS3-1	lnc-RGS3-1:1	ENSG00000233817	XLOC_007525	NA	NA	NA	inter
LNCA_21_P0011677	2.4358501	A	2.4119678	A	1.0166917247172	0	lncRNA	TCONS_l2_00012350	NA	NA	NA	NA	XLOC_l2_006624	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006624), lincRNA [TCONS_l2_00012350]"	chr19:16147713-16147772	hs|19p13.12	Agilent_HUMAN_G3V2	TCONS_l2_00012350	TCONS_l2_00012350	chr19	 16147713	 16147772	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47523_PI429285431	9.731915	P	9.978396	P	0.842950020659635	0	lncRNA	51534-1_{1..822}	"gi|310124145|ref|XR_109723.1| PREDICTED: Homo sapiens uncharacterized LOC100134361, transcript variant 1 (LOC100134361), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310124145|ref|XR_109723.1| PREDICTED: Homo sapiens uncharacterized LOC100134361, transcript variant 1 (LOC100134361), misc_RNA"	NA	NA	NA	NA	NA	XR_109723.1	NA	NA	NA	NA	NA	Unknown
CUST_7606_PI429285431	1.6894163	A	0.9892321	A	1.62471221900693	0	lncRNA	9241-1_{1..2566}	lnc-TRAPPC2L-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRAPPC2L-1:4	chr16	 88952150	 88954715	+	lnc-TRAPPC2L-1	lnc-TRAPPC2L-1:4	ENSG00000249569	ENSG00000259881.1	CBFA2T3	"hg19_refFlat_CBFA2T3:range=chr16:88943384-889680325'pad=0,hg19_refFlat_CBFA2T3:range=chr16:88943384-889680325'pad=0 3'pad=0 strand=- repeatMasking=none,-98.90;hg19_refFlat_CBFA2T3:range=chr16:88943384-890432155'pad=0,hg19_refFlat_CBFA2T3:range=chr16:88943384-890432155'pad=0 3'pad=0 strand=- repeatMasking=none,-98.90chr16:88942150-88963544"	NA	inner
LNCA_21_P0013492	0.8948879	A	0.893244	A	1.00114011408661	0	lncRNA	ENST00000521446	NA	BC048118	NA	Hs.407557	XLOC_l2_014219	NA	ENST00000521446	THC2601817	NA	"BROAD Institute lincRNA (XLOC_l2_014219), lincRNA [TCONS_l2_00027791]"	chr8:58259312-58259371	hs|8q12.1	Agilent_HUMAN_G3V2	ENST00000521446	ENST00000521446	chr8	 58259312	 58259371	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38788_PI429285431	5.540906	P	5.890964	P	0.78455255625997	0	lncRNA	39781-1_{1..1019}	n384462|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hkh.2||0.6086910|-0.2452744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384462|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hkh.2||0.6086910|-0.2452744	chr4	 77806699	 77807717	-	NA	NA	NA	NA	ANKRD56	NA	chr4:77806752-77817718	inter
CUST_10048_PI429285431	0.89414805	A	0.9010182	A	0.99524929536244	0	lncRNA	11573-1_{1..1226}	lnc-RREB1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RREB1-4:1	chr6	  6898453	  6899678	+	lnc-RREB1-4	lnc-RREB1-4:1	XLOC_005151	linc-RREB1-3	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-13.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00"	NA	inter
CUST_47540_PI429285431	0.8986145	A	1.4853446	A	0.665850362535001	0	lncRNA	51550-1_{1..994}	"gi|310124161|ref|XR_109739.1| PREDICTED: Homo sapiens uncharacterized LOC100506877 (LOC100506877), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310124161|ref|XR_109739.1| PREDICTED: Homo sapiens uncharacterized LOC100506877 (LOC100506877), misc_RNA"	NA	NA	NA	NA	NA	XR_109739.1	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	Unknown
CUST_44063_PI429285431	4.115323	P	5.161844	P	0.484134227801134	0	lncRNA	48736-1_{1..3000}	"gi|386869267|ref|NR_048551.1| Homo sapiens solute carrier family 4, anion exchanger, member 3 (SLC4A3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386869267|ref|NR_048551.1| Homo sapiens solute carrier family 4, anion exchanger, member 3 (SLC4A3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_048551.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001840	0.8959161	A	0.91872704	A	0.984313004263832	0	lncRNA	AL117577	NA	AL117577	NA	Hs.274526	XLOC_001377	NA	ENST00000450628	THC2614443	NA	"BROAD Institute lincRNA (XLOC_001377), lincRNA [TCONS_00002842]"	chr2:19688540-19688599	hs|2p24.1	Agilent_HUMAN_G3V2	AL117577	AL117577	chr2	 19688540	 19688599	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5656_PI429285431	1.2217845	A	1.0032302	A	1.16356701148296	0	lncRNA	5582-1_{1..480}	"transcript_id ""ENST00000563954.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563954.1"" | genecode_v17"	chr16	 81772708	 81773187	+	ENSG00000261218.1	ENST00000563954.1	RP11-960L18.1	RP11-960L18.1-005	NA	NA	NA	inter
CUST_21031_PI429285431	0.89228076	A	0.90633136	A	0.990308138001649	0	lncRNA	22659-1_{1..756}	lnc-F2RL2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-F2RL2-3:1	chr5	 75607009	 75607764	-	lnc-F2RL2-3	lnc-F2RL2-3:1	ENSG00000250348.1	RP11-466P24.6	SV2C	"hg19_refFlat_SV2C:range=chr5:75427576-756213725'pad=0,hg19_refFlat_SV2C:range=chr5:75427576-756213725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30chr5:75597009-75617287"	NA	inner
CUST_3867_PI429285431	0.9047352	A	0.92361355	A	0.986999767534416	0	lncRNA	3836-1_{1..993}	"transcript_id ""ENST00000524613.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524613.1"" | genecode_v17"	chr11	 15723509	 15724501	-	ENSG00000254645.1	ENST00000524613.1	RP11-396O20.2	RP11-396O20.2-001	NA	NA	NA	inter
CUST_8042_PI429285431	9.663185	P	8.460312	P	2.3019763314687	0	lncRNA	9650-1_{1..897}	lnc-SERPINC1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:6	chr1	173837098	173837994	-	lnc-SERPINC1-1	lnc-SERPINC1-1:6	ENSG00000234741	GAS5	DARS2	NA	chr1:173827098-173827682	inter
LNCA_21_P0014683	4.3600245	P	3.9091408	P	1.36687725940051	0	lncRNA	XR_111561	XR_111561	XR_111561	NA	Hs.650117	LOC100507759	uncharacterized LOC100507759	NA	THC2522240	NA	"PREDICTED: Homo sapiens hypothetical LOC100507759 (LOC100507759), miscRNA [XR_111561]"	chr16:29229829-29229770	hs|16p11.2	Agilent_HUMAN_G3V2	XR_111561	XR_111561	chr16	 29229770	 29229829	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40913_PI429285431	3.414347	P	2.9347677	P	1.39433700860279	0	lncRNA	41599-1_{1..310}	n410756|NR_038208|lncRNA|Homosapiens||RefGeneNoncode|NR_038208||-0.7766610|-0.1567783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410756|NR_038208|lncRNA|Homosapiens||RefGeneNoncode|NR_038208||-0.7766610|-0.1567783	chr8	 96281063	 96281372	+	NA	NA	NA	NA	C8orf37	NA	chr8:96271063-96281462	inter
CUST_7147_PI429285431	1.553598	A	1.8162246	A	0.833568924515573	0	lncRNA	7083-1_{1..1628}	"transcript_id ""ENST00000455084.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000455084.1"" | genecode_v17"	chrY	 22627554	 22629181	-	ENSG00000229236.1	ENST00000455084.1	TTTY10	TTTY10-001	NA	NA	NA	inter
CUST_13854_PI429285431	0.8973304	A	0.90933895	A	0.991710853437352	0	lncRNA	15497-1_{1..558}	lnc-PCLO-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCLO-1:1	chr7	 82804724	 82805281	-	lnc-PCLO-1	lnc-PCLO-1:1	XLOC_006512	linc-PCLO	NA	NA	NA	inter
CUST_10304_PI429285431	1.2068027	A	0.99575514	A	1.15752837553407	0	lncRNA	11832-1_{1..594}	lnc-NRP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NRP2-1:1	chr2	206711927	206712520	+	lnc-NRP2-1	lnc-NRP2-1:1	XLOC_001816	linc-EEF1B2-2	NA	NA	NA	inter
LNCA_21_P0002256	6.729015	P	7.052039	P	0.799392531921548	0	lncRNA	TCONS_00003761	NA	NA	NA	NA	XLOC_001561	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001561), lincRNA [TCONS_00003761]"	chr2:88584579-88584638	hs|2p11.2	Agilent_HUMAN_G3V2	TCONS_00003761	TCONS_00003761	chr2	 88584579	 88584638	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11212_PI429285431	0.8975322	A	0.908817	A	0.992208485144154	0	lncRNA	12769-1_{1..260}	lnc-ABCA5-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABCA5-3:1	chr17	 68154219	 68154478	-	lnc-ABCA5-3	lnc-ABCA5-3:1	XLOC_012561	linc-ABCA5-8	NA	NA	NA	inter
CUST_2078_PI429285431	1.1453212	A	1.2355269	A	0.939388801257471	0	lncRNA	2069-1_{1..1799}	"transcript_id ""ENST00000508179.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000508179.1"" | genecode_v17"	chr5	  9546312	  9548110	+	ENSG00000250786.1	ENST00000508179.1	CTD-2001E22.2	CTD-2001E22.2-001	SEMA5A	NA	chr5:9536312-9546233	inter
CUST_39120_PI429285431	2.8720675	A	3.7512655	P	0.543669575386414	0	lncRNA	40096-1_{1..1772}	n385699|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bxt.1||1.1187700|-0.1312026	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385699|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bxt.1||1.1187700|-0.1312026	chr9	132098802	132100573	+	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.01;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30"	NA	inter
CUST_3637_PI429285431	5.256604	P	5.182818	P	1.05247502582945	0	lncRNA	3607-1_{1..273}	"transcript_id ""ENST00000421132.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421132.1"" | genecode_v17"	chr10	 28721937	 28722209	-	ENSG00000237128.1	ENST00000421132.1	RP11-351M16.3	RP11-351M16.3-001	NA	NA	NA	inter
CUST_40826_PI429285431	1.3337533	A	1.3760873	A	0.971082653046046	0	lncRNA	41529-1_{1..1939}	n410595|NR_037852_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037852_7||-0.8249440|-0.2356103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410595|NR_037852_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037852_7||-0.8249440|-0.2356103	chr6	  3007657	  3009595	-	NA	NA	NA	NA	NQO2	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NQO2:range=chr6:3006787-30198895'pad=0,hg19_refFlat_NQO2:range=chr6:3006787-30198895'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50chr6:3000067-3019994"	NA	inner
CUST_21206_PI429285431	2.1200373	A	2.023572	A	1.06915075959217	0	lncRNA	22831-1_{1..743}	lnc-TIGD1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIGD1-1:2	chr2	233449016	233449758	-	lnc-TIGD1-1	lnc-TIGD1-1:2	ENSG00000237126.1	AC073254.1	NA	NA	NA	inter
CUST_27852_PI429285431	0.9046709	A	0.9123206	A	0.9947116647528	0	lncRNA	29445-1_{1..346}	n325088|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077567|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077567|-1.2917800|-0.3479674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325088|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077567|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077567|-1.2917800|-0.3479674	chr20	  1732661	  1733006	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14338_PI429285431	3.546169	P	3.219449	P	1.2541587722462	0	lncRNA	15994-1_{1..888}	lnc-SOCS6-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOCS6-1:3	chr18	 68019215	 68020102	+	lnc-SOCS6-1	lnc-SOCS6-1:3	XLOC_012709	linc-C18orf55-9	NA	NA	NA	inter
CUST_42030_PI429285431	0.8983442	A	1.4733933	A	0.671263405540427	0	lncRNA	43903-1_{1..80}	ENST00000516774 ncrna:miRNA chromosome:GRCh37:X:146331669:146331748:-1 gene:ENSG00000252583 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516774 ncrna:miRNA chromosome:GRCh37:X:146331669:146331748:-1 gene:ENSG00000252583 gene_biotype:miRNA transcript_biotype:miRNA	chrX	146331669	146331748	-	ENSG00000252583	ENST00000516774	NA	NA	NA	NA	NA	inter
CUST_24114_PI429285431	0.91074395	A	0.9052993	A	1.00378107408948	0	lncRNA	25664-1_{1..667}	lnc-GLRB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLRB-1:1	chr4	157854108	157854774	+	lnc-GLRB-1	lnc-GLRB-1:1	ENSG00000250235.1	RP11-612J15.2	PDGFC	NA	chr4:157844108-157864283	inter
LNCA_32_P204950	5.7942243	P	5.8810873	P	0.941567872676915	0	lncRNA	XR_108565	XR_108565	XR_108565	   401176	Hs.369777	LOC401176	uncharacterized LOC401176	NA	THC2626023	NA	"PREDICTED: Homo sapiens hypothetical LOC401176 (LOC401176), miscRNA [XR_108565]"	chr5:16183984-16184043	hs|5p15.1	Agilent_HUMAN_G3V2	XR_108565	XR_108565	chr5	 16183984	 16184043	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13977_PI429285431	2.0639071	A	1.7968702	A	1.20333380343218	0	lncRNA	15622-1_{1..1311}	lnc-SDSL-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SDSL-5:1	chr12	114449791	114451101	+	lnc-SDSL-5	lnc-SDSL-5:1	XLOC_009887	linc-MAP1LC3B2-11	NA	NA	NA	inter
CUST_39319_PI429285431	0.89287996	A	0.8983249	A	0.996232968323724	0	lncRNA	40286-1_{1..999}	n386361|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010iiy.2||-1.2322300|-0.2928419	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386361|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010iiy.2||-1.2322300|-0.2928419	chr4	 76648697	 76649695	-	NA	NA	NA	NA	USO1	NA	chr4:76649829-76659795	inter
CUST_29360_PI429285431	2.0491912	A	3.359357	P	0.40327453110526	0	lncRNA	31112-1_{1..1240}	n332618|BC016788|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000050655|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000050655|-0.7811670|-0.1090325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n332618|BC016788|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000050655|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000050655|-0.7811670|-0.1090325	chr6	150184630	150185869	+	NA	NA	NA	NA	RAET1G	"hg19_refFlat_ULBP1:range=chr6:150285186-1502912615'pad=0,hg19_refFlat_ULBP1:range=chr6:150285186-1502912615'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_LRP11:range=chr6:150141685-1501851565'pad=0,hg19_refFlat_LRP11:range=chr6:150141685-1501851565'pad=0 3'pad=0 strand=- repeatMasking=none,-111.20;hg19_refFlat_RAET1L:range=chr6:150341266-1503466075'pad=0,hg19_refFlat_RAET1L:range=chr6:150341266-1503466075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ULBP2:range=chr6:150263209-1502685655'pad=0,hg19_refFlat_ULBP2:range=chr6:150263209-1502685655'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RAET1G:range=chr6:150238048-1502441465'pad=0,hg19_refFlat_RAET1G:range=chr6:150238048-1502441465'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30chr6:150226774-150244214"	NA	inner
CUST_32434_PI429285431	0.8873813	A	0.8941126	A	0.995345086233635	0	lncRNA	34108-1_{1..1624}	n339030|AK091969|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1459|NULL|-1.1724800|-0.3123269	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339030|AK091969|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1459|NULL|-1.1724800|-0.3123269	chr2	177686757	177688380	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46349_PI429285431	3.6690774	P	3.9180498	P	0.841495580667374	0	lncRNA	50573-1_{1..984}	"gi|310123125|ref|XR_110221.1| PREDICTED: Homo sapiens uncharacterized LOC100506476 (LOC100506476), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310123125|ref|XR_110221.1| PREDICTED: Homo sapiens uncharacterized LOC100506476 (LOC100506476), misc_RNA"	Chr14	 74254017	 74255000	+	100506476	XR_110221.2	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.59;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60"	NA	inter
CUST_39825_PI429285431	0.89063776	A	0.8949467	A	0.997017726227453	0	lncRNA	40733-1_{1..1718}	n406345|NR_015340|lncRNA|Homosapiens||RefGeneNoncode|NR_015340||5.3299800|-0.1825598	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406345|NR_015340|lncRNA|Homosapiens||RefGeneNoncode|NR_015340||5.3299800|-0.1825598	chr14	 95107061	 95108778	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3844_PI429285431	0.88641614	A	0.96431994	A	0.947433244060615	0	lncRNA	3813-1_{1..827}	"transcript_id ""ENST00000534483.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534483.1"" | genecode_v17"	chr11	   327171	   327997	+	ENSG00000255328.1	ENST00000534483.1	RP11-326C3.12	RP11-326C3.12-001	IFITM3	NA	chr11:319673-320914	inter
CUST_29601_PI429285431	0.9401207	A	0.8997725	A	1.02836199583168	0	lncRNA	31362-1_{1..426}	n333120|AF339791|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077943|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077943|-1.3026000|-0.4789091	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333120|AF339791|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077943|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077943|-1.3026000|-0.4789091	chr13	 96230430	 96230855	-	NA	NA	NA	NA	CLDN10	NA	chr13:96220430-96232010	inner
CUST_42244_PI429285431	3.1001482	A	3.4844437	P	0.766153036741968	0	lncRNA	44380-1_{1..68}	ENST00000387419 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:7518:7585:1 gene:ENSG00000210154 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000387419 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:7518:7585:1 gene:ENSG00000210154 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	chrMT	     7518	     7585	+	ENSG00000210154	ENST00000387419	NA	NA	NA	NA	NA	Unknown
CUST_20173_PI429285431	2.1415164	A	2.2324789	A	0.938896151744044	0	lncRNA	21818-1_{1..658}	lnc-MAPK15-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAPK15-3:2	chr8	144872520	144873177	+	lnc-MAPK15-3	lnc-MAPK15-3:2	ENSG00000214733.4	RP11-429J17.8	SCRIB	NA	chr8:144873090-144882629	inter
CUST_39348_PI429285431	10.549394	P	10.538507	P	1.00757483838433	0	lncRNA	40315-1_{1..1331}	n386435|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010kzj.2||11.2471000|-0.1320380	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386435|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010kzj.2||11.2471000|-0.1320380	chr7	 55713311	 55714641	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18407_PI429285431	5.13897	P	5.081442	P	1.0406810670726	0	lncRNA	20132-1_{1..617}	lnc-POTEM-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-POTEM-2:8	chr14	 19925240	 19925856	-	lnc-POTEM-2	lnc-POTEM-2:8	ENSG00000244306	CTD-2314B22.3	NA	NA	NA	inter
CUST_42884_PI429285431	0.88266623	A	0.98768234	A	0.929794559910257	0	lncRNA	45967-1_{1..145}	ENST00000459477 ncrna:snoRNA chromosome:GRCh37:7:107243808:107243952:1 gene:ENSG00000238832 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459477 ncrna:snoRNA chromosome:GRCh37:7:107243808:107243952:1 gene:ENSG00000238832 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	107243808	107243952	+	ENSG00000238832	ENST00000459477	NA	NA	BCAP29	NA	chr7:107233808-107253952	inner
CUST_38944_PI429285431	12.793772	P	12.321945	P	1.38686465403061	0	lncRNA	39931-1_{1..1420}	n385113|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tbk.3||-0.2142010|-0.2464503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n385113|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tbk.3||-0.2142010|-0.2464503	chr7	 30617112	 30618531	-	NA	NA	NA	NA	GARS	NA	chr7:30634181-30635588	inter
CUST_29134_PI429285431	0.8996069	A	0.89469945	A	1.00340737708736	0	lncRNA	30875-1_{1..662}	n326642|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000012076|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000012076|-0.1447240|-0.3488368	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326642|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000012076|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000012076|-0.1447240|-0.3488368	chr1	 35414567	 35415228	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50"	NA	inter
CUST_25207_PI429285431	4.247406	P	4.5968122	P	0.78490709195612	0	lncRNA	26738-1_{1..207}	lnc-AGRP-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGRP-3:2	chr16	 67576394	 67576600	-	lnc-AGRP-3	lnc-AGRP-3:2	ENSG00000260894.1	CTD-2012K14.4	FAM65A	"hg19_refFlat_FAM65A:range=chr16:67571482-675803665'pad=0,hg19_refFlat_FAM65A:range=chr16:67571482-675803665'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_FAM65A:range=chr16:67572350-675803665'pad=0,hg19_refFlat_FAM65A:range=chr16:67572350-675803665'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_FAM65A:range=chr16:67563726-675803665'pad=0,hg19_refFlat_FAM65A:range=chr16:67563726-675803665'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00chr16:67566394-67580691"	NA	inner
CUST_1393_PI429285431	1.0615182	A	1.0677543	A	0.995686793576233	0	lncRNA	1382-1_{1..561}	"transcript_id ""ENST00000478239.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000478239.1"" | genecode_v17"	chr3	 81295730	 81296290	-	ENSG00000241593.1	ENST00000478239.1	RP11-520D19.2	RP11-520D19.2-001	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70"	NA	inter
CUST_21303_PI429285431	4.3847814	P	4.246581	P	1.10053146993843	0	lncRNA	22928-1_{1..3000}	lnc-TRIOBP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIOBP-1:1	chr22	 38169790	 38172789	+	lnc-TRIOBP-1	lnc-TRIOBP-1:1	ENSG00000100101.12	RP1-37E16.12	TRIOBP	NA	chr22:38159790-38172563	inner
CUST_27008_PI429285431	0.8909805	A	0.8849848	A	1.00416455028906	0	lncRNA	28536-1_{1..1077}	n324110|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000143657|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000143657|-1.0786500|-0.2556688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324110|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000143657|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000143657|-1.0786500|-0.2556688	chr9	 39385733	 39386809	-	NA	NA	NA	NA	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40"	NA	inter
CUST_35294_PI429285431	6.387273	P	6.670566	P	0.821713286850675	0	lncRNA	36697-1_{1..1303}	n342314|BC067908|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4806|NULL|-1.1095600|-0.1685358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342314|BC067908|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4806|NULL|-1.1095600|-0.1685358	chr19	  1874880	  1876182	-	NA	NA	NA	NA	FAM108A1	NA	chr19:1876975-1885518	inter
LNCA_21_P0001585	3.7157888	P	3.6359866	P	1.05687312855269	0	lncRNA	TCONS_00001693	NA	NA	NA	NA	XLOC_001052	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001052), lincRNA [TCONS_00001693]"	chr1:157256991-157256932	hs|1q23.1	Agilent_HUMAN_G3V2	TCONS_00001693	TCONS_00001693	chr1	157256932	157256991	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46907_PI429285431	2.3562894	A	1.5359609	A	1.76580801926228	0	lncRNA	51027-1_{1..3000}	"gi|223890255|ref|NR_026903.1| Homo sapiens archaelysin family metallopeptidase 2 pseudogene 1 (AMZ2P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223890255|ref|NR_026903.1| Homo sapiens archaelysin family metallopeptidase 2 pseudogene 1 (AMZ2P1), non-coding RNA"	Chr17	 62962668	 62965667	-	201283	NR_026903.1	NA	NA	NA	NA	NA	inter
CUST_35136_PI429285431	1.6856384	A	1.9542992	A	0.830089729629842	0	lncRNA	36538-1_{1..484}	n342104|AF085989|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4586|NULL|-1.3366800|-0.3536561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342104|AF085989|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4586|NULL|-1.3366800|-0.3536561	chr6	110757894	110758377	+	NA	NA	NA	NA	SLC22A16	NA	chr6:110747894-110768362	inner
CUST_23459_PI429285431	2.6313157	A	2.6086378	A	1.01584331774497	0	lncRNA	25026-1_{1..2107}	lnc-BAK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-BAK1-1:1	chr6	 33560774	 33562880	-	lnc-BAK1-1	lnc-BAK1-1:1	ENSG00000197251.3	LINC00336	NA	"hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-61.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_3883_PI429285431	1.2456137	A	2.0925326	A	0.555970831355839	0	lncRNA	3852-1_{1..463}	"transcript_id ""ENST00000526327.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526327.1"" | genecode_v17"	chr11	 25756317	 25756779	+	ENSG00000254456.1	ENST00000526327.1	RP11-405K6.1	RP11-405K6.1-003	NA	NA	NA	inter
LNCA_21_P0012577	0.887009	A	0.8860874	A	1.00063900852061	0	lncRNA	TCONS_l2_00020444	NA	NA	NA	NA	XLOC_l2_010602	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010602), lincRNA [TCONS_l2_00020444]"	chr4:23122012-23122205	hs|4p15.2	Agilent_HUMAN_G3V2	TCONS_l2_00020444	TCONS_l2_00020444	chr4	 23122012	 23122205	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014419	0.8873367	A	0.88624036	A	1.00076021379608	0	lncRNA	ENST00000540720	XR_109699	XR_109699	NA	Hs.721644	LOC100287576	NA	ENST00000540720	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100287576 (LOC100287576), miscRNA [XR_109699]"	chr22:18987054-18987113	hs|22q11.21	Agilent_HUMAN_G3V2	ENST00000540720	ENST00000540720	chr22	 18987054	 18987113	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46112_PI429285431	1.7270561	A	3.2783825	P	0.341196227398525	0	lncRNA	50373-1_{1..2207}	"gi|374088137|ref|NR_046160.1| Homo sapiens uncharacterized LOC256021 (LOC256021), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374088137|ref|NR_046160.1| Homo sapiens uncharacterized LOC256021 (LOC256021), transcript variant 4, non-coding RNA"	Chr12	 92378752	 92380958	-	256021	NR_046160.1	NA	NA	NA	NA	NA	inter
CUST_18992_PI429285431	7.0688124	P	7.94792	P	0.543703643063965	0	lncRNA	20683-1_{1..362}	lnc-BSDC1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BSDC1-1:4	chr1	 32827331	 32827692	-	lnc-BSDC1-1	lnc-BSDC1-1:4	ENSG00000225828	RP4-811H24.6	BSDC1	NA	chr1:32830704-32837425	inner
CUST_35613_PI429285431	4.8342624	P	4.857509	P	0.984015809742367	0	lncRNA	37026-1_{1..1033}	n342751|AX721063|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5254|NULL|5.7802100|-0.1491730	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342751|AX721063|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5254|NULL|5.7802100|-0.1491730	chr11	  7749815	  7750847	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51669_PI429285431	2.7010767	A	2.63894	A	1.04401084612416	0	lncRNA	55234-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00011427 range=chr17:66116838-66132517 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011427 range=chr17:66116838-66132517 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 66119838	 66122837	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50"	NA	inter
CUST_31237_PI429285431	3.4035914	P	3.0378003	A	1.28858803143121	0	lncRNA	33026-1_{1..483}	n337686|AJ227904|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|68|NULL|-1.0687800|-0.3346560	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337686|AJ227904|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|68|NULL|-1.0687800|-0.3346560	chr15	 33397958	 33398440	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40038_PI429285431	4.3102183	P	2.4617305	A	3.60122514949034	0	lncRNA	40892-3_{6001..7012}	n407230|NR_026698|lncRNA|Homosapiens||RefGeneNoncode|NR_026698||8.1665200|-0.3248800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407230|NR_026698|lncRNA|Homosapiens||RefGeneNoncode|NR_026698||8.1665200|-0.3248800	chr3	122146747	122147758	-	NA	NA	NA	NA	KPNA1	NA	chr3:122140748-122233786	inter
CUST_44033_PI429285431	2.9571433	A	2.004312	A	1.93566769532369	0	lncRNA	48716-1_{1..3000}	"gi|358356410|ref|NR_045562.1| Homo sapiens GULP, engulfment adaptor PTB domain containing 1 (GULP1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|358356410|ref|NR_045562.1| Homo sapiens GULP, engulfment adaptor PTB domain containing 1 (GULP1), transcript variant 4, non-coding RNA"	Chr2	189157390	189160389	+	51454	NR_045562.1	NA	NA	NA	NA	NA	inter
CUST_26466_PI429285431	5.5037823	P	5.966748	P	0.725493352278987	0	lncRNA	27974-1_{1..429}	lnc-CTD-2517M22.16.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2517M22.16.1-1:1	chr8	145690295	145690723	+	lnc-CTD-2517M22.16.1-1	lnc-CTD-2517M22.16.1-1:1	ENSG00000254578.1	CTD-2517M22.16	CYHR1	NA	chr8:145680295-145691031	inner
CUST_49553_PI429285431	0.89720166	A	0.9013231	A	0.997147312152951	0	lncRNA	53344-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00024305 range=chr6:80773211-80780323 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024305 range=chr6:80773211-80780323 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 80773211	 80776210	+	NA	NA	NA	NA	NA	"hg19_refFlat_ARHGAP21:range=chr10:24873341-250108285'pad=0,hg19_refFlat_ARHGAP21:range=chr10:24873341-250108285'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80"	NA	inter
CUST_50516_PI429285431	5.6541343	P	5.829733	P	0.885400013165105	0	lncRNA	54212-1_{1..299}	hg19_lincRNAsTranscripts_TCONS_l2_00030367 range=chrX:134567463-134567866 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030367 range=chrX:134567463-134567866 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	134567463	134567761	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20602_PI429285431	2.9507277	A	3.6966317	P	0.596294113525216	0	lncRNA	22241-1_{1..345}	lnc-FSIP1-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FSIP1-6:3	chr15	 39602818	 39603162	-	lnc-FSIP1-6	lnc-FSIP1-6:3	ENSG00000259447.1	RP11-462P6.1	NA	NA	NA	inter
LNCA_21_P0006007	3.1557312	P	2.695603	A	1.3756640562368	0	lncRNA	ENST00000417311	NA	NA	NA	NA	XLOC_007344	NA	ENST00000417311	NA	NA	"BROAD Institute lincRNA (XLOC_007344), lincRNA [TCONS_00015666]"	chr9:36315217-36315276	hs|9p13.2	Agilent_HUMAN_G3V2	ENST00000417311	ENST00000417311	chr9	 36315217	 36315276	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18554_PI429285431	8.5397415	P	8.559658	P	0.986289787114195	0	lncRNA	20265-1_{1..2763}	lnc-MST1P9-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MST1P9-2:3	chr1	 16961039	 16963801	-	lnc-MST1P9-2	lnc-MST1P9-2:3	ENSG00000215908	CROCCP2	NA	NA	NA	inter
LNCA_21_P0006432	0.89209044	A	0.89041317	A	1.00116327104705	0	lncRNA	ENST00000428222	NA	BC041420	NA	NA	XLOC_008053	NA	ENST00000428222	THC2527576	NA	"BROAD Institute lincRNA (XLOC_008053), lincRNA [TCONS_00017009]"	chrX:118469135-118469194	hs|Xq24	Agilent_HUMAN_G3V2	ENST00000428222	ENST00000428222	chrX	118469135	118469194	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4472_PI429285431	1.6734462	A	2.2414675	A	0.674541308144886	0	lncRNA	4421-1_{1..280}	"transcript_id ""ENST00000536505.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536505.1"" | genecode_v17"	chr12	126675924	126676203	+	ENSG00000255778.1	ENST00000536505.1	RP4-765H13.1	RP4-765H13.1-001	NA	NA	NA	inter
CUST_19356_PI429285431	3.470507	P	3.796821	P	0.797571630875329	0	lncRNA	21019-4_{9001..9378}	lnc-AC142381.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AC142381.1-1:1	chr16	 32150463	 32150840	+	lnc-AC142381.1-1	lnc-AC142381.1-1:1	ENSG00000260544.1	RP11-1166P10.9	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_26918_PI429285431	9.2201185	P	9.111954	P	1.07785603810499	0	lncRNA	28436-1_{1..635}	n323994|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053625|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053625|-1.0254600|-0.1907299	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323994|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053625|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053625|-1.0254600|-0.1907299	chr9	112401575	112402209	+	NA	NA	NA	NA	PALM2	NA	chr9:112403068-112417320	inner
LNCA_21_P0006849	0.89468306	A	0.8927711	A	1.00132614824128	0	lncRNA	TCONS_00018149	NA	NA	NA	NA	XLOC_008428	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008428), lincRNA [TCONS_00018149]"	chr10:29421737-29421796	hs|10p12.1	Agilent_HUMAN_G3V2	TCONS_00018149	TCONS_00018149	chr10	 29421737	 29421796	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16010_PI429285431	1.1647553	A	0.89687085	A	1.20404094192955	0	lncRNA	17706-1_{1..373}	lnc-PIEZO2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIEZO2-6:1	chr18	 10372224	 10372596	-	lnc-PIEZO2-6	lnc-PIEZO2-6:1	XLOC_012761	linc-PPP4R1-6	NA	NA	NA	inter
CUST_35204_PI429285431	1.5028389	A	0.9803142	A	1.43646685047414	0	lncRNA	36604-1_{1..2747}	n342187|AK094428|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4677|NULL|-1.1500600|-0.3662874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342187|AK094428|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4677|NULL|-1.1500600|-0.3662874	chr6	170886168	170888914	+	NA	NA	NA	NA	PDCD2	"hg19_refFlat_PDCD2:range=chr6:170886647-1708936695'pad=0,hg19_refFlat_PDCD2:range=chr6:170886647-1708936695'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40chr6:170884660-170893780"	NA	inner
LNCA_21_P0004443	2.494876	A	1.7359444	A	1.69223696020002	0	lncRNA	TCONS_00010470	NA	NA	NA	NA	XLOC_004991	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004991), lincRNA [TCONS_00010470]"	chr5:127038614-127038555	hs|5q23.2	Agilent_HUMAN_G3V2	TCONS_00010470	TCONS_00010470	chr5	127038555	127038614	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4893_PI429285431	2.4818647	A	1.1067559	A	2.59387471746594	0	lncRNA	4835-1_{1..603}	"transcript_id ""ENST00000555313.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555313.1"" | genecode_v17"	chr14	 75081510	 75082112	-	ENSG00000258976.1	ENST00000555313.1	CTD-2207P18.2	CTD-2207P18.2-001	LTBP2	NA	chr14:75071510-75079034	inter
CUST_12054_PI429285431	0.900962	A	0.90866953	A	0.994671792831821	0	lncRNA	13640-1_{1..1080}	lnc-OXNAD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OXNAD1-2:1	chr3	 16581842	 16582921	+	lnc-OXNAD1-2	lnc-OXNAD1-2:1	XLOC_002588	linc-PLCL2-1	NA	NA	NA	inter
CUST_34147_PI429285431	0.88857746	A	1.437193	A	0.683675892684445	0	lncRNA	35665-1_{1..514}	n340986|BC018444|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3452|NULL|1.2700700|-0.2341426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340986|BC018444|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3452|NULL|1.2700700|-0.2341426	chr11	 19402030	 19402543	+	NA	NA	NA	NA	NAV2	NA	chr11:19392030-19416561	inner
CUST_51167_PI429285431	0.9188609	A	0.9975624	A	0.946909530749714	0	lncRNA	54789-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00007753 range=chr14:60426466-60430455 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007753 range=chr14:60426466-60430455 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 60426466	 60429465	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50"	NA	inter
CUST_46606_PI429285431	4.217576	P	4.9114895	P	0.618174693392333	0	lncRNA	50785-1_{1..2552}	"gi|78042614|ref|NR_002594.1| Homo sapiens solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2 (SLC7A5P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|78042614|ref|NR_002594.1| Homo sapiens solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2 (SLC7A5P2), non-coding RNA"	Chr16	 21529214	 21531765	-	387254	NR_002594.1	NA	NA	NA	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50"	NA	inter
CUST_11516_PI429285431	0.88805974	A	0.8929306	A	0.996629470155768	0	lncRNA	13086-1_{1..304}	lnc-C21orf63-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C21orf63-2:1	chr21	 33919279	 33919582	+	lnc-C21orf63-2	lnc-C21orf63-2:1	XLOC_013914	linc-OLIG2-5	NA	NA	NA	inter
CUST_30964_PI429285431	6.7288494	P	6.769675	P	0.972098492877203	0	lncRNA	32752-1_{1..214}	n337091|DQ409329|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343127_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343127_03|-0.9966140|-0.1483578	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337091|DQ409329|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343127_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343127_03|-0.9966140|-0.1483578	chr6	  3292898	  3293111	+	NA	NA	NA	NA	SLC22A23	NA	chr6:3282898-3303112	inner
CUST_3816_PI429285431	0.9038662	A	0.9126305	A	0.993943465363825	0	lncRNA	3784-1_{1..943}	"transcript_id ""ENST00000414774.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414774.1"" | genecode_v17"	chr10	122685059	122686001	-	ENSG00000227307.1	ENST00000414774.1	RP11-95I16.2	RP11-95I16.2-001	NA	NA	NA	inter
LNCA_21_P0004694	0.89487064	A	0.8932881	A	1.00109753499032	0	lncRNA	ENST00000446392	NA	NA	NA	NA	XLOC_005498	NA	ENST00000446392	NA	NA	"BROAD Institute lincRNA (XLOC_005498), lincRNA [TCONS_00011398]"	chr6:149885006-149885065	hs|6q25.1	Agilent_HUMAN_G3V2	ENST00000446392	ENST00000446392	chr6	149885006	149885065	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28770_PI429285431	0.89888895	A	0.90505797	A	0.995733090417217	0	lncRNA	30478-1_{1..3000}	n326176|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092708|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092708|-0.3473520|-0.3012108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326176|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092708|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092708|-0.3473520|-0.3012108	chr1	232871891	232874890	-	NA	NA	NA	NA	NA	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
CUST_10867_PI429285431	8.4619255	P	8.4629545	P	0.999287005852415	0	lncRNA	12405-1_{1..285}	lnc-RP11-863N1.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-863N1.2.1-1:1	chr18	 19929003	 19929287	-	lnc-RP11-863N1.2.1-1	lnc-RP11-863N1.2.1-1:1	XLOC_012788	linc-ABHD3-3	NA	NA	NA	inter
CUST_4276_PI429285431	7.47014	P	7.5397844	P	0.95287283618714	0	lncRNA	4232-1_{1..549}	"transcript_id ""ENST00000548955.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548955.1"" | genecode_v17"	chr12	 58280144	 58280692	-	ENSG00000245651.2	ENST00000548955.1	RP11-620J15.2	RP11-620J15.2-002	NA	NA	NA	inter
CUST_32411_PI429285431	2.171988	A	0.8986528	A	2.41719724024196	0	lncRNA	34087-1_{1..1184}	n339005|BC020676|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1434|NULL|-1.2158900|-0.2904386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339005|BC020676|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1434|NULL|-1.2158900|-0.2904386	chr2	171784207	171785390	-	NA	NA	NA	NA	GORASP2	NA	chr2:171784948-171795364	inner
CUST_20641_PI429285431	1.2508948	A	1.4975245	A	0.842863141447508	0	lncRNA	22280-1_{1..540}	lnc-RAB20-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-RAB20-1:1	chr13	111160446	111160985	-	lnc-RAB20-1	lnc-RAB20-1:1	ENSG00000232814.2	COL4A2-AS1	COL4A2	"hg19_refFlat_COL4A2:range=chr13:110960251-1111645385'pad=0,hg19_refFlat_COL4A2:range=chr13:110960251-1111645385'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.20chr13:111150446-111165374"	NA	inner
CUST_37959_PI429285431	1.4555264	A	0.92981815	A	1.43964015685153	0	lncRNA	39047-3_{6001..8804}	n346506|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2056|NULL|-1.3176700|-0.3550158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346506|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2056|NULL|-1.3176700|-0.3550158	chr2	 56189726	 56192529	-	NA	NA	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50"	NA	inter
CUST_7403_PI429285431	1.2422338	A	1.9143906	A	0.627567784430032	0	lncRNA	9048-1_{1..3000}	lnc-CST7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CST7-2:1	chr20	 24998990	 25001989	+	lnc-CST7-2	lnc-CST7-2:1	ENSG00000249718	ENST00000506743	ACSS1	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ACSS1:range=chr20:24988398-250130725'pad=0,hg19_refFlat_ACSS1:range=chr20:24988398-250130725'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_ACSS1:range=chr20:24988398-250387385'pad=0,hg19_refFlat_ACSS1:range=chr20:24988398-250387385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.60;hg19_refFlat_ACSS1:range=chr20:24987496-250387385'pad=0,hg19_refFlat_ACSS1:range=chr20:24987496-250387385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90chr20:24988990-25012860"	NA	inner
CUST_19065_PI429285431	2.7380295	A	1.8624504	A	1.8347444078358	0	lncRNA	20756-1_{1..706}	lnc-C7orf65-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C7orf65-3:2	chr7	 47066791	 47067496	+	lnc-C7orf65-3	lnc-C7orf65-3:2	ENSG00000223829	AC004870.4	NA	NA	NA	inter
CUST_39987_PI429285431	1.1791769	A	1.056931	A	1.08842794284433	0	lncRNA	40855-2_{3001..6000}	n407092|NR_024593|lncRNA|Homosapiens||RefGeneNoncode|NR_024593||3.4704200|-0.1636103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407092|NR_024593|lncRNA|Homosapiens||RefGeneNoncode|NR_024593||3.4704200|-0.1636103	chr22	 25044132	 25047131	-	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0,hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10"	NA	inter
CUST_17529_PI429285431	0.9126023	A	1.0035415	A	0.938911315348528	0	lncRNA	19254-1_{1..2924}	lnc-KIAA1147-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-KIAA1147-5:2	chr7	141115805	141118728	-	lnc-KIAA1147-5	lnc-KIAA1147-5:2	XLOC_006624	linc-MRPS33-3	LOC100507421	NA	chr7:141105805-141126190	inner
CUST_15335_PI429285431	0.9088094	A	0.9103819	A	0.998910619864402	0	lncRNA	17014-1_{1..366}	lnc-RP11-6F2.7.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-6F2.7.1-1:1	chr3	156536632	156536997	+	lnc-RP11-6F2.7.1-1	lnc-RP11-6F2.7.1-1:1	XLOC_002890	linc-LEKR1	LEKR1	NA	chr3:156544096-156546805	inter
CUST_36681_PI429285431	0.90533876	A	0.92148733	A	0.988869076532883	0	lncRNA	37864-3_{6001..8981}	n345170|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_719|NULL|-1.2853000|-0.3165992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345170|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_719|NULL|-1.2853000|-0.3165992	chr12	 19692270	 19695250	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70"	NA	inter
LNCA_21_P0000991	1.1667066	A	0.92641526	A	1.18123117694086	0	lncRNA	ENST00000419658	NA	NA	NA	NA	XLOC_000269	NA	ENST00000419658	NA	NA	"BROAD Institute lincRNA (XLOC_000269), lincRNA [TCONS_00000243]"	chr1:83418390-83418449	hs|1p31.1	Agilent_HUMAN_G3V2	ENST00000419658	ENST00000419658	chr1	 83418390	 83418449	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31130_PI429285431	0.91987747	A	0.93361676	A	0.990521853362395	0	lncRNA	32925-1_{1..230}	n337450|DQ993522|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394689|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394689|-1.0257600|-0.1739161	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337450|DQ993522|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394689|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394689|-1.0257600|-0.1739161	chr2	167005557	167005786	-	NA	NA	NA	NA	SCN1A	NA	chr2:166995557-167005642	inner
CUST_21118_PI429285431	5.304988	P	5.5911646	P	0.82007252014574	0	lncRNA	22744-1_{1..600}	lnc-RALGDS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RALGDS-1:1	chr9	135946948	135947547	-	lnc-RALGDS-1	lnc-RALGDS-1:1	ENSG00000228947.1	RP11-326L24.4	CEL	"hg19_refFlat_CEL:range=chr9:135937381-1359471515'pad=0,hg19_refFlat_CEL:range=chr9:135937381-1359471515'pad=0 3'pad=0 strand=+ repeatMasking=none,-110.60chr9:135937365-135947248"	NA	inner
CUST_4457_PI429285431	2.9978104	A	4.118124	P	0.45999382514682	0	lncRNA	4407-1_{1..484}	"transcript_id ""ENST00000537827.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537827.2"" | genecode_v17"	chr12	123349882	123350365	+	ENSG00000256152.2	ENST00000537827.2	RP11-463O12.3	RP11-463O12.3-001	HIP1R	NA	chr12:123339882-123347507	inner
CUST_43043_PI429285431	16.69098	P	16.69098	P	1	0	lncRNA	46702-1_{1..113}	ENST00000516460 ncrna:snRNA chromosome:GRCh37:12:133571776:133571888:-1 gene:ENSG00000252269 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516460 ncrna:snRNA chromosome:GRCh37:12:133571776:133571888:-1 gene:ENSG00000252269 gene_biotype:snRNA transcript_biotype:snRNA	chr12	133571776	133571888	-	ENSG00000252269	ENST00000516460	NA	NA	ZNF26	NA	chr12:133563056-133581888	inner
LNCA_21_P0003090	6.1036954	P	6.1576977	P	0.963260358352161	0	lncRNA	TCONS_00006377	NA	NA	NA	NA	XLOC_002996	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002996), lincRNA [TCONS_00006377]"	chr3:195377532-195377591	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00006377	TCONS_00006377	chr3	195377532	195377591	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49173_PI429285431	1.4112058	A	1.6679324	A	0.836984841672132	0	lncRNA	52997-2_{3001..3145}	hg19_lincRNAsTranscripts_TCONS_l2_00021317 range=chr4:141363416-141420653 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021317 range=chr4:141363416-141420653 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	141366416	141366560	-	NA	NA	NA	NA	LOC152586	NA	chr4:141364529-141419501	inter
LNCA_21_P0014377	4.91276	P	5.8199716	P	0.533214678113663	0	lncRNA	XR_109511	XR_109511	XR_109511	NA	Hs.157101	LOC728485	uncharacterized LOC728485	NA	THC2520556	NA	"PREDICTED: Homo sapiens hypothetical LOC728485 (LOC728485), miscRNA [XR_109511]"	chr19:37267074-37267133	hs|19q13.12	Agilent_HUMAN_G3V2	XR_109511	XR_109511	chr19	 37267074	 37267133	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27552_PI429285431	1.4581486	A	1.770504	A	0.805325879003475	0	lncRNA	29132-1_{1..569}	n324743|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319044|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319044|-0.8732410|-0.4247325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324743|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319044|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319044|-0.8732410|-0.4247325	chr22	 18706439	 18707007	+	NA	NA	NA	NA	LOC642643	NA	chr22:18703328-18730116	inter
CUST_5041_PI429285431	0.91129273	A	2.349355	A	0.36906267149243	0	lncRNA	4982-1_{1..2473}	"transcript_id ""ENST00000556120.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556120.1"" | genecode_v17"	chr14	102018560	102021032	-	ENSG00000258498.1	ENST00000556120.1	DIO3OS	DIO3OS-012	DIO3	NA	chr14:102027688-102029789	inter
CUST_40277_PI429285431	2.9254098	P	2.7541885	A	1.12601129567126	0	lncRNA	41087-1_{1..3000}	n408225|NR_028387_4|lncRNA|Homosapiens||RefGeneNoncode|NR_028387_4||0.0027761|-0.2480897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408225|NR_028387_4|lncRNA|Homosapiens||RefGeneNoncode|NR_028387_4||0.0027761|-0.2480897	chr6	  4703244	  4706243	-	NA	NA	NA	NA	CDYL	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PSMC1:range=chr14:90722942-907387515'pad=0,hg19_refFlat_PSMC1:range=chr14:90722942-907387515'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20chr6:4702676-4720990"	NA	inter
LNCA_21_P0012223	0.9074032	A	0.91872287	A	0.992184503713028	0	lncRNA	ENST00000418954	NA	NA	NA	NA	XLOC_l2_009139	NA	ENST00000418954	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009139), lincRNA [TCONS_l2_00017429]"	chr21:16225351-16225292	hs|21q11.2	Agilent_HUMAN_G3V2	ENST00000418954	ENST00000418954	chr21	 16225292	 16225351	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35648_PI429285431	1.0156074	A	1.8604366	A	0.556776721751685	0	lncRNA	37065-1_{1..1816}	n342797|AK130197|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5300|NULL|1.1837700|-0.1596795	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342797|AK130197|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5300|NULL|1.1837700|-0.1596795	chr7	  2762817	  2764632	+	NA	NA	NA	NA	AMZ1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10chr7:2752817-2755069"	NA	inter
CUST_21515_PI429285431	9.5095825	P	9.3736105	P	1.09883289108816	0	lncRNA	23133-1_{1..529}	lnc-GCGR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GCGR-1:1	chr17	 79801475	 79802003	+	lnc-GCGR-1	lnc-GCGR-1:1	ENSG00000262831.1	RP11-498C9.2	P4HB	NA	chr17:79801034-79811834	inner
CUST_25448_PI429285431	1.1282712	A	2.0803924	A	0.516871944178302	0	lncRNA	26978-1_{1..701}	lnc-AC006455.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC006455.1-4:1	chr7	 62882314	 62883014	+	lnc-AC006455.1-4	lnc-AC006455.1-4:1	ENSG00000227305.1	RP11-340I6.3	NA	NA	NA	inter
CUST_16862_PI429285431	0.8995973	A	0.9049395	A	0.996303916526103	0	lncRNA	18568-1_{1..1018}	lnc-SMOC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMOC2-1:1	chr6	169073752	169074769	+	lnc-SMOC2-1	lnc-SMOC2-1:1	XLOC_005547	linc-C6orf120-8	SMOC2	NA	chr6:169063752-169068674	inter
CUST_45238_PI429285431	2.6493306	A	0.97328913	A	3.19549951851439	0	lncRNA	49693-2_{3001..3381}	"gi|215490109|ref|NR_024522.1| Homo sapiens transmembrane protein 67 (TMEM67), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|215490109|ref|NR_024522.1| Homo sapiens transmembrane protein 67 (TMEM67), transcript variant 3, non-coding RNA"	Chr8	 94770072	 94770452	+	91147	NR_024522.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20"	NA	inter
CUST_356_PI429201921	7.3859134	P	7.739696	P	0.782529692405846	0	lncRNA	229-3_{6001..8448}	TC06003194.hg.1	 TCONS_l2_00024518-XLOC_l2_012802 // Broad TUCP // linc-FGFR1OP-4 chr6:+:166723013-166731019 // chr6 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00024517-XLOC_l2_012802 // Broad TUCP // linc-FGFR1OP-4 chr6:+:166722952-166731019 // chr6 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00024519-XLOC_l2_012802 // Broad TUCP // linc-FGFR1OP-4 chr6:+:166723264-166731401 // chr6 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6:+:166722952-166731019	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00024517-XLOC_l2_012802	linc-FGFR1OP-4	chr6	166722952	166731019	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47519_PI429285431	1.5234339	A	3.222408	A	0.308005047776114	0	lncRNA	51530-1_{1..782}	"gi|374074936|ref|NR_033531.2| Homo sapiens intraflagellar transport 27 homolog (Chlamydomonas) (IFT27), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|374074936|ref|NR_033531.2| Homo sapiens intraflagellar transport 27 homolog (Chlamydomonas) (IFT27), transcript variant 4, non-coding RNA"	Chr22	 37168447	 37169228	-	11020	NR_033531.2	NA	NA	NA	NA	NA	inter
CUST_26223_PI429285431	1.2112181	A	1.5435146	A	0.794271146193004	0	lncRNA	27730-1_{1..545}	lnc-C10orf103-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf103-2:3	chr10	 75259353	 75259897	+	lnc-C10orf103-2	lnc-C10orf103-2:3	ENSG00000221817.2	RP11-137L10.6	PPP3CB	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_USP54:range=chr10:75258387-753354165'pad=0,hg19_refFlat_USP54:range=chr10:75258387-753354165'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60chr10:75249353-75255782"	NA	inner
CUST_42177_PI429285431	0.88300234	A	1.5632443	A	0.62406060204125	0	lncRNA	44232-1_{1..75}	ENST00000581129 ncrna:miRNA chromosome:GRCh37:8:75460778:75460852:1 gene:ENSG00000266502 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581129 ncrna:miRNA chromosome:GRCh37:8:75460778:75460852:1 gene:ENSG00000266502 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 75460778	 75460852	+	ENSG00000266502	ENST00000581129	NA	NA	NA	NA	NA	inter
CUST_47759_PI429285431	0.902331	A	1.3493766	A	0.733543486233112	0	lncRNA	51698-1_{1..3000}	"gi|385137076|ref|NR_047614.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 44, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137076|ref|NR_047614.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 44, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047614.1	NA	NA	NA	NA	NA	inter
CUST_18460_PI429285431	4.4083343	P	4.7284307	P	0.801016352378772	0	lncRNA	20183-1_{1..3000}	lnc-WDR60-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR60-4:7	chr7	158818931	158821930	+	lnc-WDR60-4	lnc-WDR60-4:7	ENSG00000231419	AC004863.6	VIPR2	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30chr7:158820866-158832886"	NA	inner
CUST_31203_PI429285431	0.89509076	A	0.9061399	A	0.992370572725549	0	lncRNA	32997-1_{1..1955}	n337648|CR608746|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|27|NULL|-1.0935100|-0.3895079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337648|CR608746|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|27|NULL|-1.0935100|-0.3895079	chrX	 27367266	 27369220	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31886_PI429285431	8.309002	P	8.304565	P	1.00308022822401	0	lncRNA	33618-1_{1..596}	n338441|BC038214|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|838|NULL|1.5591100|-0.2195092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338441|BC038214|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|838|NULL|1.5591100|-0.2195092	chr1	197871782	197872377	+	NA	NA	NA	NA	LHX9	NA	chr1:197881635-197886497	inner
CUST_49960_PI429285431	17.231293	P	17.231293	P	1	0	lncRNA	53709-1_{1..260}	hg19_lincRNAsTranscripts_TCONS_l2_00026920 range=chr7:138912216-138914980 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026920 range=chr7:138912216-138914980 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	138912216	138912475	-	NA	NA	NA	NA	UBN2	NA	chr7:138912224-138924980	inter
CUST_12084_PI429285431	1.1845641	A	1.0203093	A	1.1205871079795	0	lncRNA	13678-1_{1..882}	lnc-HS1BP3-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HS1BP3-1:5	chr2	 20739630	 20740511	-	lnc-HS1BP3-1	lnc-HS1BP3-1:5	XLOC_002010	linc-PUM2-2	HS1BP3	NA	chr2:20729630-20749861	inter
CUST_18438_PI429285431	4.893154	P	4.1900992	P	1.62794820570891	0	lncRNA	20161-1_{1..402}	lnc-ZNF131-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF131-1:2	chr5	 43044801	 43045202	+	lnc-ZNF131-1	lnc-ZNF131-1:2	ENSG00000215068	AC025171.1	C5orf39	NA	chr5:43039182-43040447	inter
CUST_47493_PI429285431	0.9177591	A	0.88131624	A	1.02558200957106	0	lncRNA	51510-1_{1..963}	"gi|224028239|ref|NR_026962.1| Homo sapiens TTC28 antisense RNA 1 (TTC28-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224028239|ref|NR_026962.1| Homo sapiens TTC28 antisense RNA 1 (TTC28-AS1), transcript variant 2, non-coding RNA"	Chr22	 28315364	 28316326	+	284900	NR_026962.1	NA	NA	NA	NA	NA	inter
CUST_24868_PI429285431	0.88672376	A	0.8921309	A	0.996259070929246	0	lncRNA	26409-1_{1..713}	lnc-SLC5A9-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC5A9-3:1	chr1	 49652914	 49653626	+	lnc-SLC5A9-3	lnc-SLC5A9-3:1	ENSG00000229846.1	RP11-141A19.1	AGBL4	NA	chr1:49642914-49663257	inner
CUST_26175_PI429285431	0.9700657	A	0.8867956	A	1.05941665910239	0	lncRNA	27686-1_{1..2183}	lnc-ARL17B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ARL17B-1:1	chr17	 44639835	 44642017	-	lnc-ARL17B-1	lnc-ARL17B-1:1	ENSG00000232300.1	FAM215B	LRRC37A2	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10chr17:44629835-44633014"	NA	inner
CUST_8788_PI429285431	3.0799117	P	3.269638	A	0.876772041806064	0	lncRNA	10328-1_{1..2011}	lnc-EZH2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EZH2-3:1	chr7	148194115	148196125	-	lnc-EZH2-3	lnc-EZH2-3:1	ENSG00000250134	ENST00000504155	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10"	NA	inter
LNCA_21_P0008401	2.8473485	A	3.0391774	P	0.875495155058842	0	lncRNA	TCONS_00022645	NA	NA	NA	NA	XLOC_010949	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010949), lincRNA [TCONS_00022645]"	chr14:105122579-105122638	hs|14q32.33	Agilent_HUMAN_G3V2	TCONS_00022645	TCONS_00022645	chr14	105122579	105122638	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44639_PI429285431	0.88002443	A	0.8816986	A	0.998840226842057	0	lncRNA	49203-1_{1..1187}	"gi|397139116|ref|XR_132722.2| PREDICTED: Homo sapiens uncharacterized LOC100507427 (LOC100507427), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139116|ref|XR_132722.2| PREDICTED: Homo sapiens uncharacterized LOC100507427 (LOC100507427), misc_RNA"	NA	NA	NA	NA	NA	XR_132722.2	NA	NA	NA	NA	NA	Unknown
CUST_17201_PI429285431	0.89353013	A	0.8942625	A	0.99949248862686	0	lncRNA	18915-1_{1..919}	lnc-KCNJ3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNJ3-1:1	chr2	156345609	156346527	+	lnc-KCNJ3-1	lnc-KCNJ3-1:1	XLOC_001715	linc-GPD2-3	NA	NA	NA	inter
CUST_15376_PI429285431	1.5017176	A	1.0404986	A	1.37670456842672	0	lncRNA	17059-1_{1..717}	lnc-UBIAD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBIAD1-1:1	chr1	 11424193	 11424909	+	lnc-UBIAD1-1	lnc-UBIAD1-1:1	XLOC_000051	linc-PTCHD2-2	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00"	NA	inter
CUST_34962_PI429285431	2.1431446	A	2.0588636	A	1.06015925512695	0	lncRNA	36379-1_{1..899}	n341882|BC039477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4362|NULL|-0.7819620|-0.2181231	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341882|BC039477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4362|NULL|-0.7819620|-0.2181231	chr12	 31516414	 31517312	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43367_PI429285431	1.2582191	A	1.192376	A	1.04669644252984	0	lncRNA	48183-1_{1..2216}	"gi|223941920|ref|NR_026927.1| Homo sapiens uncharacterized LOC115110 (LOC115110), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223941920|ref|NR_026927.1| Homo sapiens uncharacterized LOC115110 (LOC115110), non-coding RNA"	Chr1	  2481359	  2483574	-	115110	NR_026927.1	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	inter
CUST_17930_PI429285431	0.89457804	A	0.91365814	A	0.986861752725404	0	lncRNA	19662-1_{1..1262}	lnc-ADRA1D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADRA1D-1:1	chr20	  4304885	  4306146	-	lnc-ADRA1D-1	lnc-ADRA1D-1:1	XLOC_013637	linc-ADRA1D-1	NA	NA	NA	inter
CUST_48008_PI429285431	2.4936829	A	2.7489913	A	0.837808020160331	0	lncRNA	51892-1_{1..1532}	"gi|410173296|ref|XR_172194.1| PREDICTED: Homo sapiens keratin, type I cytoskeletal 16-like (LOC101060607), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173296|ref|XR_172194.1| PREDICTED: Homo sapiens keratin, type I cytoskeletal 16-like (LOC101060607), misc_RNA"	NA	NA	NA	NA	NA	XR_172194.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006511	10.050676	P	9.755787	P	1.22679058516831	0	lncRNA	TCONS_00017230	NA	NA	NA	NA	XLOC_008047	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008047), lincRNA [TCONS_00017230]"	chrX:113220826-113220885	hs|Xq23	Agilent_HUMAN_G3V2	TCONS_00017230	TCONS_00017230	chrX	113220826	113220885	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2412_PI429285431	0.89858246	A	0.89751303	A	1.00074154719958	0	lncRNA	2404-1_{1..573}	"transcript_id ""ENST00000520323.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520323.1"" | genecode_v17"	chr5	158654723	158655295	+	ENSG00000253315.1	ENST00000520323.1	CTB-11I22.2	CTB-11I22.2-001	NA	NA	NA	inter
LNCA_21_P0002721	0.8894149	A	0.8879156	A	1.00103977576021	0	lncRNA	ENST00000440867	NA	BC039672	NA	Hs.543290	XLOC_002562	NA	ENST00000440867	THC2610289	NA	"BROAD Institute lincRNA (XLOC_002562), lincRNA [TCONS_00005485]"	chr3:66116-66175	hs|3p26.3	Agilent_HUMAN_G3V2	ENST00000440867	ENST00000440867	chr3	    66116	    66175	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7979_PI429285431	2.147028	A	1.439034	A	1.63353118854069	0	lncRNA	9591-1_{1..368}	lnc-MKKS-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MKKS-3:2	chr20	 10349363	 10349730	-	lnc-MKKS-3	lnc-MKKS-3:2	ENSG00000227906	RP5-839B4.7	NA	NA	NA	inter
CUST_1430_PI429285431	0.89061534	A	0.8840576	A	1.00455582535193	0	lncRNA	1419-1_{1..545}	"transcript_id ""ENST00000473528.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000473528.1"" | genecode_v17"	chr3	107591815	107592359	-	ENSG00000241469.2	ENST00000473528.1	LINC00635	LINC00635-005	NA	NA	NA	inter
CUST_26426_PI429285431	5.2685556	P	5.143564	P	1.09050138327192	0	lncRNA	27933-1_{1..1137}	lnc-SMG1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMG1-2:1	chr16	 19132031	 19133167	-	lnc-SMG1-2	lnc-SMG1-2:1	ENSG00000261759.1	RP11-626G11.3	ITPRIPL2	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90chr16:19125254-19132952"	NA	inter
CUST_28411_PI429285431	0.8949195	A	0.9031875	A	0.994285449626893	0	lncRNA	30069-1_{1..962}	n325732|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044893|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044893|-1.4433300|-0.4663159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325732|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044893|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044893|-1.4433300|-0.4663159	chr13	 48049110	 48050071	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90"	NA	inter
CUST_31729_PI429285431	0.8982059	A	2.0168808	A	0.460516610713524	0	lncRNA	33470-1_{1..1709}	n338263|AK130337|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|656|NULL|-0.3956290|-0.2678660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338263|AK130337|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|656|NULL|-0.3956290|-0.2678660	chr19	  2610152	  2611860	-	NA	NA	NA	NA	GNG7	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90chr19:2600152-2621860"	NA	inner
CUST_41100_PI429285431	5.5949726	P	5.908885	P	0.804457215854169	0	lncRNA	41819-1_{1..82}	ENST00000580343 ncrna:miRNA chromosome:GRCh37:2:128181113:128181194:-1 gene:ENSG00000264075 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580343 ncrna:miRNA chromosome:GRCh37:2:128181113:128181194:-1 gene:ENSG00000264075 gene_biotype:miRNA transcript_biotype:miRNA	chr2	128181113	128181194	-	ENSG00000264075	ENST00000580343	NA	NA	PROC	NA	chr2:128175996-128186822	inter
CUST_14733_PI429285431	3.2714763	P	3.2379725	P	1.02349481945409	0	lncRNA	16396-1_{1..1057}	lnc-DHX37-10:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-DHX37-10:13	chr12	127221212	127222268	-	lnc-DHX37-10	lnc-DHX37-10:13	XLOC_010244	linc-DHX37-4	NA	NA	NA	inter
CUST_49048_PI429285431	3.6014802	P	3.3757803	P	1.16934439936682	0	lncRNA	52876-1_{1..231}	hg19_lincRNAsTranscripts_TCONS_l2_00021387 range=chr4:172042680-172142533 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021387 range=chr4:172042680-172142533 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	172042680	172042910	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28399_PI429285431	1.0719203	A	0.94930315	A	1.08870806501692	0	lncRNA	30056-1_{1..807}	n325719|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045157|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045157|-1.1684200|-0.3834981	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325719|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045157|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045157|-1.1684200|-0.3834981	chr13	 57683825	 57684631	+	NA	NA	NA	NA	PRR20A	NA	chr13:57715052-57715252	inter
CUST_41773_PI429285431	8.790827	P	9.277513	P	0.713662563339608	0	lncRNA	43336-1_{1..82}	ENST00000583670 ncrna:miRNA chromosome:GRCh37:2:111058889:111058970:1 gene:ENSG00000264336 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583670 ncrna:miRNA chromosome:GRCh37:2:111058889:111058970:1 gene:ENSG00000264336 gene_biotype:miRNA transcript_biotype:miRNA	chr2	111058889	111058970	+	ENSG00000264336	ENST00000583670	NA	NA	NA	NA	NA	inter
LNCA_21_P0005216	0.8951853	A	0.893613	A	1.0010904293983	0	lncRNA	ENST00000448898	NA	NA	NA	NA	XLOC_005999	NA	ENST00000448898	NA	NA	"BROAD Institute lincRNA (XLOC_005999), lincRNA [TCONS_00012959]"	chr7:17720185-17720244	hs|7p21.1	Agilent_HUMAN_G3V2	ENST00000448898	ENST00000448898	chr7	 17720185	 17720244	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009362	3.7142446	P	3.402733	P	1.24100729837876	0	lncRNA	TCONS_00025762	NA	NA	NA	NA	XLOC_012572	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012572), lincRNA [TCONS_00025762]"	chr17:72052564-72052505	hs|17q25.1	Agilent_HUMAN_G3V2	TCONS_00025762	TCONS_00025762	chr17	 72052505	 72052564	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30434_PI429285431	3.9455624	P	4.465234	P	0.697530593669283	0	lncRNA	32214-1_{1..523}	n335570|CR541962|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000268832|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000268832|-0.9270880|-0.2573401	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335570|CR541962|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000268832|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000268832|-0.9270880|-0.2573401	chr15	 80253412	 80253934	+	NA	NA	NA	NA	BCL2A1	"hg19_refFlat_BCL2A1:range=chr15:80253409-802634615'pad=0,hg19_refFlat_BCL2A1:range=chr15:80253409-802634615'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0,hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BCL2A1:range=chr15:80253501-802634615'pad=0,hg19_refFlat_BCL2A1:range=chr15:80253501-802634615'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90chr15:80243412-80263643"	NA	inner
LNCA_21_P0002643	0.89182	A	0.8907089	A	1.00077045247847	0	lncRNA	TCONS_00005068	NA	NA	NA	NA	XLOC_001958	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001958), lincRNA [TCONS_00005068]"	chr2:5817200-5817141	hs|2p25.2	Agilent_HUMAN_G3V2	TCONS_00005068	TCONS_00005068	chr2	  5817141	  5817200	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007319	3.838623	P	3.7626913	P	1.05404152172595	0	lncRNA	TCONS_00019575	NA	NA	NA	NA	XLOC_009374	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009374), lincRNA [TCONS_00019575]"	chr11:11264408-11264349	hs|11p15.3	Agilent_HUMAN_G3V2	TCONS_00019575	TCONS_00019575	chr11	 11264349	 11264408	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1616_PI429285431	2.825659	A	1.7610906	A	2.09154407479677	0	lncRNA	1602-1_{1..408}	"transcript_id ""ENST00000432908.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432908.1"" | genecode_v17"	chr3	193921269	193921676	-	ENSG00000225742.1	ENST00000432908.1	RP11-513G11.4	RP11-513G11.4-002	NA	NA	NA	inter
CUST_6073_PI429285431	2.2954352	A	1.7781518	A	1.43125764567212	0	lncRNA	5997-1_{1..695}	"transcript_id ""ENST00000578278.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578278.1"" | genecode_v17"	chr18	  6925476	  6926170	-	ENSG00000265933.1	ENST00000578278.1	LINC00668	LINC00668-004	LAMA1	NA	chr18:6926973-6936989	inter
CUST_4809_PI429285431	1.0933844	A	1.282357	A	0.877230209134917	0	lncRNA	4753-1_{1..492}	"transcript_id ""ENST00000557142.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557142.1"" | genecode_v17"	chr14	 50474031	 50474522	-	ENSG00000258929.2	ENST00000557142.1	RP11-58E21.3	RP11-58E21.3-003	C14orf182	NA	chr14:50464031-50474238	inner
CUST_30120_PI429285431	0.9222602	A	0.9186541	A	1.00250268454745	0	lncRNA	31893-1_{1..469}	n334700|AJ007018|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244130|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244130|2.5663100|-0.2322237	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334700|AJ007018|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244130|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244130|2.5663100|-0.2322237	chr11	101344320	101344788	-	NA	NA	NA	NA	TRPC6	NA	chr11:101334320-101363732	inner
CUST_39282_PI429285431	1.5390347	A	2.116843	A	0.669980819881694	0	lncRNA	40254-1_{1..987}	n386258|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fka.1||0.6745580|-0.1623369	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386258|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fka.1||0.6745580|-0.1623369	chr2	111165514	111166500	-	NA	NA	NA	NA	LIMS3L	NA	chr2:111203460-111217444	inter
CUST_15570_PI429285431	2.1362753	A	2.366508	A	0.85249737681615	0	lncRNA	17255-1_{1..3000}	lnc-ZADH2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZADH2-1:2	chr18	 72881639	 72884638	-	lnc-ZADH2-1	lnc-ZADH2-1:2	XLOC_012885	linc-FAM69C-1	NA	NA	NA	inter
LNCA_21_P0001038	2.1084907	A	1.9546654	A	1.11251539480979	0	lncRNA	ENST00000426262	NA	NA	NA	NA	XLOC_000500	NA	ENST00000426262	NA	NA	"BROAD Institute lincRNA (XLOC_000500), lincRNA [TCONS_00000353]"	chr1:188505522-188505581	hs|1q31.1	Agilent_HUMAN_G3V2	ENST00000426262	ENST00000426262	chr1	188505522	188505581	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20549_PI429285431	1.6530102	A	0.9664885	A	1.60939861916488	0	lncRNA	22190-1_{1..546}	lnc-GDPD5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-GDPD5-1:1	chr11	 75308228	 75308773	-	lnc-GDPD5-1	lnc-GDPD5-1:1	ENSG00000255434.1	CTD-2530H12.8	MAP6	NA	chr11:75298228-75318315	inner
CUST_15781_PI429285431	1.480912	A	1.4535884	A	1.01911976201854	0	lncRNA	17471-1_{1..2615}	lnc-EDNRB-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EDNRB-2:2	chr13	 78568750	 78571364	-	lnc-EDNRB-2	lnc-EDNRB-2:2	XLOC_010662	linc-EDNRB-1	NA	NA	NA	inter
CUST_19632_PI429285431	2.1526985	A	1.8932211	A	1.19704501002509	0	lncRNA	21288-1_{1..582}	lnc-GADL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GADL1-3:1	chr3	 29684224	 29684805	-	lnc-GADL1-3	lnc-GADL1-3:1	ENSG00000203506.2	RBMS3-AS2	RBMS3	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90chr3:29674224-29694300"	NA	inner
CUST_22170_PI429285431	0.89394563	A	0.904248	A	0.992884378056709	0	lncRNA	23772-1_{1..544}	lnc-C6orf225-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C6orf225-1:1	chr6	112479405	112479948	+	lnc-C6orf225-1	lnc-C6orf225-1:1	ENSG00000237234.1	RP1-142L7.5	LAMA4	"hg19_refFlat_LAMA4:range=chr6:112430640-1125753525'pad=0,hg19_refFlat_LAMA4:range=chr6:112430640-1125753525'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr6:112469405-112489534"	NA	inner
CUST_43365_PI429285431	13.054943	P	13.167217	P	0.925128708754293	0	lncRNA	48181-2_{3001..3592}	"gi|379643022|ref|NR_046424.1| Homo sapiens chromosome 1 open reading frame 86 (C1orf86), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379643022|ref|NR_046424.1| Homo sapiens chromosome 1 open reading frame 86 (C1orf86), transcript variant 6, non-coding RNA"	Chr1	  2123987	  2124578	-	199990	NR_046424.1	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30"	NA	inter
CUST_14272_PI429285431	4.9315844	P	4.784867	P	1.10704771098193	0	lncRNA	15930-1_{1..544}	lnc-FANCI-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FANCI-3:2	chr15	 89980879	 89981422	+	lnc-FANCI-3	lnc-FANCI-3:2	XLOC_011346	linc-C15orf42-1	NA	NA	NA	inter
CUST_19523_PI429285431	4.415787	P	4.435482	P	0.986441225881965	0	lncRNA	21179-1_{1..561}	lnc-AC117834.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC117834.1-1:2	chr8	 93953340	 93953900	+	lnc-AC117834.1-1	lnc-AC117834.1-1:2	ENSG00000253197.1	CTD-3239E11.2	C8orf83	NA	chr8:93943340-93963520	inner
LNCA_21_P0004847	0.9084543	A	0.92089146	A	0.991416270006329	0	lncRNA	TCONS_00011710	NA	NA	NA	NA	XLOC_005188	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005188), lincRNA [TCONS_00011710]"	chr6:17332720-17332779	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00011710	TCONS_00011710	chr6	 17332720	 17332779	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38721_PI429285431	5.8206735	P	5.699453	P	1.08765461414465	0	lncRNA	39715-1_{1..647}	n384202|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bpo.1||-1.2030200|-0.4156206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384202|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bpo.1||-1.2030200|-0.4156206	chr3	  3171713	  3172359	+	NA	NA	NA	NA	TRNT1	NA	chr3:3168600-3182360	inner
CUST_7768_PI429285431	1.4537424	A	1.9978583	A	0.685811546891562	0	lncRNA	9394-2_{3001..4233}	lnc-IL18BP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL18BP-1:2	chr11	 71734372	 71735604	+	lnc-IL18BP-1	lnc-IL18BP-1:2	ENSG00000251143	ENST00000502284	NUMA1	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NUMA1:range=chr11:71714573-717469895'pad=0,hg19_refFlat_NUMA1:range=chr11:71714573-717469895'pad=0 3'pad=0 strand=- repeatMasking=none,-104.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30chr11:71721372-71741956"	NA	inner
CUST_3854_PI429285431	3.1719315	A	3.6253574	P	0.730306562635438	0	lncRNA	3823-1_{1..1288}	"transcript_id ""ENST00000532430.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532430.1"" | genecode_v17"	chr11	  6384029	  6385316	+	ENSG00000254443.1	ENST00000532430.1	RP11-304C12.3	RP11-304C12.3-002	NA	NA	NA	inter
CUST_23346_PI429285431	3.5273073	P	3.3750758	P	1.1112870354364	0	lncRNA	24915-1_{1..392}	lnc-C5orf22-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C5orf22-2:1	chr5	 31738376	 31738767	+	lnc-C5orf22-2	lnc-C5orf22-2:1	ENSG00000249114.1	RP11-5N11.3	NA	NA	NA	inter
CUST_13363_PI429285431	0.89304453	A	0.9046445	A	0.991991751749898	0	lncRNA	15001-1_{1..272}	lnc-LSM11-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LSM11-5:1	chr5	157714697	157714968	+	lnc-LSM11-5	lnc-LSM11-5:1	XLOC_004615	linc-UBLCP1-3	NA	NA	NA	inter
CUST_2895_PI429285431	1.4300202	A	0.91205275	A	1.43193643357174	0	lncRNA	2876-1_{1..550}	"transcript_id ""ENST00000591803.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591803.1"" | genecode_v17"	chr7	106211393	106211942	-	ENSG00000267052.1	ENST00000591803.1	CTB-30L5.1	CTB-30L5.1-001	NA	NA	NA	inter
CUST_34301_PI429285431	4.7633786	P	5.002218	P	0.84742676476617	0	lncRNA	35797-2_{3001..3447}	n341160|BC028622|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3626|NULL|0.4923630|-0.2054613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341160|BC028622|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3626|NULL|0.4923630|-0.2054613	chr11	132937585	132938031	+	NA	NA	NA	NA	OPCML	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70chr11:132924585-132948017"	NA	inner
LNCA_21_P0001605	0.90165955	A	0.9101034	A	0.994164263627173	0	lncRNA	TCONS_00001763	NA	NA	NA	NA	XLOC_001134	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001134), lincRNA [TCONS_00001763]"	chr1:192917409-192917350	hs|1q31.2	Agilent_HUMAN_G3V2	TCONS_00001763	TCONS_00001763	chr1	192917350	192917409	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16405_PI429285431	0.89647806	A	0.90199244	A	0.996185018652772	0	lncRNA	18101-1_{1..714}	lnc-ITIH2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITIH2-2:1	chr10	  7578300	  7579013	+	lnc-ITIH2-2	lnc-ITIH2-2:1	XLOC_008378	linc-ITIH2-2	NA	NA	NA	inter
CUST_2874_PI429285431	0.88815266	A	1.1038778	A	0.861113230656108	0	lncRNA	2855-1_{1..453}	"transcript_id ""ENST00000434531.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434531.1"" | genecode_v17"	chr7	 76601996	 76602448	-	ENSG00000225703.1	ENST00000434531.1	AC005522.7	AC005522.7-001	NA	NA	NA	inter
CUST_44107_PI429285431	0.8909224	A	0.890394	A	1.00036632605121	0	lncRNA	48772-1_{1..2903}	"gi|346227181|ref|NR_024065.2| Homo sapiens long intergenic non-protein coding RNA 312 (LINC00312), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|346227181|ref|NR_024065.2| Homo sapiens long intergenic non-protein coding RNA 312 (LINC00312), non-coding RNA"	NA	NA	NA	NA	NA	NR_024065.2	NA	NA	NA	NA	NA	Unknown
CUST_11249_PI429285431	3.3166633	P	3.5453455	P	0.85341406931445	0	lncRNA	12807-1_{1..285}	lnc-FAM27E1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM27E1.1-3:1	chr9	 46123572	 46123856	-	lnc-FAM27E1.1-3	lnc-FAM27E1.1-3:1	XLOC_007698	linc-FAM75A6-4	LOC100287368	NA	chr9:46113572-46114039	inter
LNCA_21_P0011516	0.8969021	A	2.0317178	A	0.455393088192693	0	lncRNA	TCONS_l2_00010591	NA	NA	NA	NA	XLOC_l2_005683	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005683), lincRNA [TCONS_l2_00010591]"	chr17:17327067-17327126	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00010591	TCONS_l2_00010591	chr17	 17327067	 17327126	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26995_PI429285431	0.9004091	A	0.9149417	A	0.989977334345387	0	lncRNA	28522-1_{1..719}	n324095|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000037010|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000037010|-0.2627410|-0.2422956	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324095|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000037010|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000037010|-0.2627410|-0.2422956	chr9	 44974952	 44975670	-	NA	NA	NA	NA	LOC100505781	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10chr9:44964952-44991061"	NA	inter
CUST_47996_PI429285431	10.175799	P	9.628137	P	1.46171495222486	0	lncRNA	51882-2_{3001..4896}	"gi|410173144|ref|XR_172130.1| PREDICTED: Homo sapiens nuclear pore complex-interacting protein-like 3-like (LOC101060564), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173144|ref|XR_172130.1| PREDICTED: Homo sapiens nuclear pore complex-interacting protein-like 3-like (LOC101060564), misc_RNA"	NA	NA	NA	NA	NA	XR_172130.1	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80"	NA	Unknown
CUST_37517_PI429285431	0.9078587	A	1.8563949	A	0.518157933280696	0	lncRNA	38620-1_{1..1082}	n345990|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1539|NULL|-1.4380800|-0.2292765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n345990|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1539|NULL|-1.4380800|-0.2292765	chr9	130342585	130343666	+	NA	NA	NA	NA	FAM129B	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10chr9:130332585-130341268"	NA	inter
CUST_30615_PI429285431	4.8004394	P	4.953523	P	0.899326197288865	0	lncRNA	32397-1_{1..290}	n335939|X71927|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323174_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323174_05|-1.0483000|-0.2387064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335939|X71927|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323174_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323174_05|-1.0483000|-0.2387064	chr6	  3329027	  3329316	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3319027-3339317	inner
CUST_41705_PI429285431	1.1803731	A	1.958146	A	0.583266491819182	0	lncRNA	43207-1_{1..87}	ENST00000583168 ncrna:miRNA chromosome:GRCh37:18:13611113:13611199:1 gene:ENSG00000263527 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583168 ncrna:miRNA chromosome:GRCh37:18:13611113:13611199:1 gene:ENSG00000263527 gene_biotype:miRNA transcript_biotype:miRNA	chr18	 13611113	 13611199	+	ENSG00000263527	ENST00000583168	NA	NA	C18orf1	NA	chr18:13601113-13621199	inner
CUST_34653_PI429285431	0.88559926	A	0.8889185	A	0.997701922784332	0	lncRNA	36105-1_{1..1543}	n341551|BC038578|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4022|NULL|-1.0390100|-0.3103217	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341551|BC038578|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4022|NULL|-1.0390100|-0.3103217	chr8	 84315992	 84317534	+	NA	NA	NA	NA	NA	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00"	NA	inter
CUST_18845_PI429285431	1.1702466	A	1.1317577	A	1.02703752887954	0	lncRNA	20539-1_{1..1878}	lnc-PCDH9-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH9-4:1	chr13	 64649375	 64651252	-	lnc-PCDH9-4	lnc-PCDH9-4:1	ENSG00000227674	RP11-520F9.2	NA	NA	NA	inter
CUST_51302_PI429285431	4.210288	P	4.655766	P	0.734340971281576	0	lncRNA	54906-1_{1..575}	hg19_lincRNAsTranscripts_TCONS_l2_00008541 range=chr15:32887074-32888538 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008541 range=chr15:32887074-32888538 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 32887074	 32887648	+	NA	NA	NA	NA	LOC643699	NA	chr15:32885755-32896179	inter
CUST_42893_PI429285431	6.5169067	P	6.3249474	P	1.14231402047005	0	lncRNA	45985-1_{1..134}	ENST00000408059 ncrna:snoRNA chromosome:GRCh37:5:68456633:68456766:1 gene:ENSG00000220986 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408059 ncrna:snoRNA chromosome:GRCh37:5:68456633:68456766:1 gene:ENSG00000220986 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	 68456633	 68456766	+	ENSG00000220986	ENST00000408059	NA	NA	CCNB1	NA	chr5:68462913-68466766	inter
CUST_22912_PI429285431	2.101242	A	2.5300155	A	0.742893083782188	0	lncRNA	24489-1_{1..820}	lnc-ILK-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ILK-2:1	chr11	  6643339	  6644158	+	lnc-ILK-2	lnc-ILK-2:1	ENSG00000255390.1	RP11-732A19.5	TPP1	"hg19_refFlat_DCHS1:range=chr11:6643010-66628445'pad=0,hg19_refFlat_DCHS1:range=chr11:6643010-66628445'pad=0 3'pad=0 strand=- repeatMasking=none,-102.20chr11:6633997-6640692"	NA	inner
CUST_50298_PI429285431	0.8807676	A	0.8889661	A	0.994333349218482	0	lncRNA	54016-2_{3001..3546}	hg19_lincRNAsTranscripts_TCONS_l2_00029454 range=chr9:90750371-90755756 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029454 range=chr9:90750371-90755756 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 90753371	 90753916	-	NA	NA	NA	NA	FAM75C2	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-19.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10chr9:90744220-90749900"	NA	inter
CUST_23051_PI429285431	0.88221544	A	0.88739806	A	0.996414126215581	0	lncRNA	24622-1_{1..850}	lnc-C1orf198-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf198-3:2	chr1	230930859	230931708	-	lnc-C1orf198-3	lnc-C1orf198-3:2	ENSG00000244137.1	RP11-99J16__A.2	CAPN9	NA	chr1:230920859-230937749	inner
CUST_19540_PI429285431	2.9124453	A	3.2462232	P	0.793455984742233	0	lncRNA	21196-1_{1..757}	lnc-FRMD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FRMD1-2:1	chr6	168380225	168380981	-	lnc-FRMD1-2	lnc-FRMD1-2:1	ENSG00000235994.4	RP3-470B24.5	MLLT4	NA	chr6:168370225-168372700	inter
CUST_23740_PI429285431	1.0259142	A	0.9003155	A	1.09096037334791	0	lncRNA	25303-1_{1..820}	lnc-NIF3L1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NIF3L1-1:2	chr2	201843218	201844037	+	lnc-NIF3L1-1	lnc-NIF3L1-1:2	ENSG00000183308.6	AC005037.3	FAM126B	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10chr2:201838441-201853705"	NA	inner
CUST_31128_PI429285431	5.261882	P	5.8671865	P	0.657332626655956	0	lncRNA	32923-1_{1..284}	n337448|DQ980618|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394673|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394673|-0.9655590|-0.1320599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337448|DQ980618|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394673|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394673|-0.9655590|-0.1320599	chr2	234216462	234216745	+	NA	NA	NA	NA	SAG	NA	chr2:234216309-234234799	inner
CUST_31717_PI429285431	0.90047085	A	0.9071972	A	0.995348501346663	0	lncRNA	33459-1_{1..1234}	n338247|BC041327|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|640|NULL|-1.2212700|-0.4030108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338247|BC041327|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|640|NULL|-1.2212700|-0.4030108	chr14	 31889963	 31891196	+	NA	NA	NA	NA	HEATR5A	NA	chr14:31879963-31889788	inner
CUST_35638_PI429285431	6.7500668	P	6.9435425	P	0.874496369574671	0	lncRNA	37054-1_{1..3000}	n342784|D83243|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5287|NULL|17.2452000|-0.2351070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342784|D83243|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5287|NULL|17.2452000|-0.2351070	chr11	108028119	108031118	-	NA	NA	NA	NA	ACAT1	NA	chr11:108018119-108018895	inner
CUST_27275_PI429285431	10.128423	P	10.079825	P	1.03425934999474	0	lncRNA	28831-1_{1..1117}	n324424|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317442|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317442|-1.0597000|-0.2812426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324424|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317442|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317442|-1.0597000|-0.2812426	chr6	109187060	109188176	+	NA	NA	NA	NA	ARMC2	"hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30chr6:109177060-109207014"	NA	inner
CUST_49404_PI429285431	0.9061505	A	0.91184837	A	0.9960583263441	0	lncRNA	53213-1_{1..2671}	hg19_lincRNAsTranscripts_TCONS_l2_00023600 range=chr5:175547850-175559261 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023600 range=chr5:175547850-175559261 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	175547850	175550520	+	NA	NA	NA	NA	FAM153B	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.31;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60chr5:175537850-175543458"	NA	inter
CUST_33782_PI429285431	0.8957032	A	1.5010468	A	0.657314811832523	0	lncRNA	35335-1_{1..1619}	n340570|AK074622|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3032|NULL|-1.2831200|-0.5211859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340570|AK074622|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3032|NULL|-1.2831200|-0.5211859	chr5	100206202	100207820	-	NA	NA	NA	NA	ST8SIA4	NA	chr5:100196202-100217715	inner
LNCA_21_P0005650	6.072256	P	6.3901033	P	0.802266076568028	0	lncRNA	TCONS_00014596	NA	NA	NA	NA	XLOC_006701	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006701), lincRNA [TCONS_00014596]"	chr8:8846264-8846323	hs|8p23.1	Agilent_HUMAN_G3V2	TCONS_00014596	TCONS_00014596	chr8	  8846264	  8846323	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22569_PI429285431	3.7216747	P	3.470091	P	1.19051326865485	0	lncRNA	24156-1_{1..652}	lnc-SRPX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SRPX2-1:1	chrX	 99928327	 99928978	+	lnc-SRPX2-1	lnc-SRPX2-1:1	ENSG00000261295.1	RP11-524D16__A.3	SRPX2	NA	chrX:99918327-99926296	inter
CUST_43653_PI429285431	2.3715801	A	2.551089	A	0.883003523581232	0	lncRNA	48409-2_{3001..4401}	"gi|371872833|ref|NR_045818.1| Homo sapiens transmembrane and coiled-coil domains 1 (TMCO1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371872833|ref|NR_045818.1| Homo sapiens transmembrane and coiled-coil domains 1 (TMCO1), transcript variant 4, non-coding RNA"	Chr1	165696528	165697928	-	54499	NR_045818.1	NA	NA	NA	NA	NA	inter
CUST_34176_PI429285431	4.339416	P	4.1301675	P	1.15608582180632	0	lncRNA	35692-1_{1..459}	n341024|AF086320|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3490|NULL|-0.8233630|-0.0451043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341024|AF086320|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3490|NULL|-0.8233630|-0.0451043	chr11	 45255695	 45256153	-	NA	NA	NA	NA	PRDM11	NA	chr11:45245695-45246903	inner
CUST_27739_PI429285431	0.8960717	A	0.9076829	A	0.991984030073661	0	lncRNA	29321-1_{1..686}	n324955|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079684|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079684|-1.1307000|-0.3778146	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324955|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079684|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079684|-1.1307000|-0.3778146	chr20	 48327477	 48328162	+	NA	NA	NA	NA	B4GALT5	NA	chr20:48317477-48330421	inner
LNCA_21_P0003633	1.442436	A	2.3347762	A	0.538739518092473	0	lncRNA	TCONS_00008172	NA	NA	NA	NA	XLOC_003615	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003615), lincRNA [TCONS_00008172]"	chr4:99594516-99594575	hs|4q23	Agilent_HUMAN_G3V2	TCONS_00008172	TCONS_00008172	chr4	 99594516	 99594575	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50091_PI429285431	0.90968686	A	1.109895	A	0.870424976585845	0	lncRNA	53824-1_{1..1425}	hg19_lincRNAsTranscripts_TCONS_l2_00028422 range=chr8:138835266-138841150 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028422 range=chr8:138835266-138841150 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	138835266	138836690	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18241_PI429285431	1.1317885	A	1.1528342	M	0.985518118358816	0	lncRNA	19975-1_{1..331}	lnc-CYP7A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYP7A1-1:2	chr8	 59184429	 59184759	-	lnc-CYP7A1-1	lnc-CYP7A1-1:2	ENSG00000253281	RP11-716D16.1	NA	NA	NA	inter
CUST_28116_PI429285431	2.042717	A	2.3020475	A	0.83547554196315	0	lncRNA	29739-1_{1..522}	n325389|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323865|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323865|-0.9068430|-0.2554181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325389|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323865|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323865|-0.9068430|-0.2554181	chr2	 19932132	 19932653	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22594_PI429285431	0.92932624	A	0.90241975	A	1.01882515810863	0	lncRNA	24178-1_{1..716}	lnc-AKT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AKT1-2:1	chr14	105157555	105158270	-	lnc-AKT1-2	lnc-AKT1-2:1	ENSG00000258858.1	RP11-982M15.5	INF2	NA	chr14:105155943-105167621	inner
CUST_26150_PI429285431	4.9174976	P	5.593	P	0.626114145142087	0	lncRNA	27661-1_{1..426}	lnc-ABCC11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ABCC11-1:1	chr16	 48201064	 48201489	-	lnc-ABCC11-1	lnc-ABCC11-1:1	ENSG00000261538.1	RP11-3M1.1	ABCC11	NA	chr16:48200822-48211149	inner
CUST_9658_PI429285431	1.8212497	A	2.5552998	A	0.601213745932964	0	lncRNA	11175-1_{1..877}	lnc-TIMM22-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TIMM22-1:1	chr17	   897119	   897995	+	lnc-TIMM22-1	lnc-TIMM22-1:1	XLOC_012072	linc-TIMM22-1	ABR	NA	chr17:906759-907577	inter
CUST_29983_PI429285431	1.2766327	A	1.2002517	A	1.05436983408152	0	lncRNA	31749-1_{1..229}	n334249|S66645|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216133|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216133|0.7865160|-0.1341894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334249|S66645|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216133|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216133|0.7865160|-0.1341894	chr11	 89017921	 89018149	+	NA	NA	NA	NA	TYR	NA	chr11:89007921-89028150	inner
CUST_49197_PI429285431	1.1177503	A	0.90018725	A	1.16276781995406	0	lncRNA	53020-1_{1..428}	hg19_lincRNAsTranscripts_TCONS_l2_00022036 range=chr4:156207314-156225932 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022036 range=chr4:156207314-156225932 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	156207314	156207741	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6224_PI429285431	0.9025167	A	1.0254568	A	0.918314289474348	0	lncRNA	6150-1_{1..604}	"transcript_id ""ENST00000585706.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585706.1"" | genecode_v17"	chr18	 59238581	 59239184	-	ENSG00000267316.1	ENST00000585706.1	RP11-879F14.3	RP11-879F14.3-001	NA	NA	NA	inter
CUST_40630_PI429285431	1.0671324	A	0.8969375	A	1.12521048404034	0	lncRNA	41371-1_{1..1873}	n410124|NR_036557|lncRNA|Homosapiens||RefGeneNoncode|NR_036557||5.6603100|-0.2254524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n410124|NR_036557|lncRNA|Homosapiens||RefGeneNoncode|NR_036557||5.6603100|-0.2254524	chr1	202955579	202957451	-	NA	NA	NA	NA	TMEM183A	NA	chr1:202955703-202986393	inter
CUST_43435_PI429285431	12.532003	P	12.536907	P	0.99660657694524	0	lncRNA	48243-1_{1..1465}	"gi|373938456|ref|NR_046117.1| Homo sapiens ELOVL fatty acid elongase 1 (ELOVL1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373938456|ref|NR_046117.1| Homo sapiens ELOVL fatty acid elongase 1 (ELOVL1), transcript variant 5, non-coding RNA"	Chr1	 43829068	 43830532	-	64834	NR_046117.1	NA	NA	NA	NA	NA	inter
CUST_20572_PI429285431	1.4788544	A	0.98466814	A	1.40852606376767	0	lncRNA	22213-1_{1..768}	lnc-PTPRZ1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPRZ1-2:2	chr7	121945342	121946109	+	lnc-PTPRZ1-2	lnc-PTPRZ1-2:2	ENSG00000230316.2	RP11-560I19.4	FEZF1	NA	chr7:121935342-121944565	inter
CUST_29807_PI429285431	5.537569	P	5.8100424	P	0.827898953410707	0	lncRNA	31570-1_{1..869}	n333522|BC039188|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000095552|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000095552|2.9498200|-0.0368580	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333522|BC039188|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000095552|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000095552|2.9498200|-0.0368580	chr11	  2905958	  2906826	-	NA	NA	NA	NA	SLC22A18AS	NA	chr11:2909327-2916995	inner
CUST_13788_PI429285431	3.953241	P	4.4447627	P	0.71127447666923	0	lncRNA	15430-1_{1..979}	lnc-RP11-688I9.2.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-688I9.2.1-3:1	chr11	126890870	126891848	+	lnc-RP11-688I9.2.1-3	lnc-RP11-688I9.2.1-3:1	XLOC_009322	linc-FLI1-6	NA	NA	NA	inter
LNCA_21_P0002951	0.89358056	A	1.9370338	A	0.485164790585341	0	lncRNA	TCONS_00005997	NA	NA	NA	NA	XLOC_002623	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002623), lincRNA [TCONS_00005997]"	chr3:40915992-40916051	hs|3p22.1	Agilent_HUMAN_G3V2	TCONS_00005997	TCONS_00005997	chr3	 40915992	 40916051	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7222_PI429285431	7.7899885	P	8.152399	P	0.777863814092025	0	lncRNA	7719-1_{1..99}	"transcript_id ""ENST00000363120.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000363120.1"" | genecode_v17"	chr5	140090860	140090958	+	ENSG00000199990.1	ENST00000363120.1	VTRNA1-1	VTRNA1-1-201	ZMAT2	NA	chr5:140080860-140086239	inter
CUST_32120_PI429285431	1.1001353	A	0.9276942	A	1.12696374186022	0	lncRNA	33821-1_{1..2860}	n338685|BC040675|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1102|NULL|-1.0521600|-0.2848854	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n338685|BC040675|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1102|NULL|-1.0521600|-0.2848854	chr13	 45150028	 45152887	+	NA	NA	NA	NA	TSC22D1	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TSC22D1:range=chr13:45008101-451502105'pad=0,hg19_refFlat_TSC22D1:range=chr13:45008101-451502105'pad=0 3'pad=0 strand=- repeatMasking=none,-105.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TSC22D1:range=chr13:45008762-451502105'pad=0,hg19_refFlat_TSC22D1:range=chr13:45008762-451502105'pad=0 3'pad=0 strand=- repeatMasking=none,-105.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60chr13:45140028-45150701"	NA	inner
CUST_24647_PI429285431	1.1228391	A	1.0787492	A	1.0310325644857	0	lncRNA	26196-1_{1..600}	lnc-RAB18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAB18-1:1	chr10	 28056287	 28056886	+	lnc-RAB18-1	lnc-RAB18-1:1	ENSG00000230500.1	RP11-360I20.2	NA	NA	NA	inter
LNCA_21_P0008066	4.5497737	P	4.5381556	P	1.0080855663097	0	lncRNA	TCONS_00021795	NA	NA	NA	NA	XLOC_010398	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010398), lincRNA [TCONS_00021795]"	chr13:54349060-54349119	hs|13q14.3	Agilent_HUMAN_G3V2	TCONS_00021795	TCONS_00021795	chr13	 54349060	 54349119	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2177_PI429285431	3.5652232	P	4.010314	P	0.734538084999673	0	lncRNA	2169-1_{1..585}	"transcript_id ""ENST00000510621.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510621.1"" | genecode_v17"	chr5	 66995257	 66995841	-	ENSG00000250421.1	ENST00000510621.1	RP11-83M16.6	RP11-83M16.6-001	NA	NA	NA	inter
LNCA_21_P0014268	1.7202009	A	0.9264761	A	1.73354441477628	0	lncRNA	ENST00000525365	XR_109054	XR_109054	NA	NA	LOC100506082	NA	ENST00000525365	THC2657128	NA	"PREDICTED: Homo sapiens hypothetical LOC100506082 (LOC100506082), miscRNA [XR_109054]"	chr11:4223826-4223885	hs|11p15.4	Agilent_HUMAN_G3V2	ENST00000525365	ENST00000525365	chr11	  4223826	  4223885	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012631	1.3883796	A	0.925903	A	1.37790516761314	0	lncRNA	TCONS_l2_00020871	NA	NA	NA	NA	XLOC_l2_010933	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010933), lincRNA [TCONS_l2_00020871]"	chr4:171021419-171021478	hs|4q33	Agilent_HUMAN_G3V2	TCONS_l2_00020871	TCONS_l2_00020871	chr4	171021419	171021478	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23420_PI429285431	3.6387384	P	3.8197315	P	0.88209558399935	0	lncRNA	24988-1_{1..546}	lnc-KL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KL-2:1	chr13	 33855166	 33855711	+	lnc-KL-2	lnc-KL-2:1	ENSG00000236581.1	STARD13-AS2	STARD13	NA	chr13:33845166-33859901	inner
CUST_40723_PI429285431	1.3715453	A	0.89576143	A	1.39067361942771	0	lncRNA	41457-1_{1..1880}	n410312|NR_037181|lncRNA|Homosapiens||RefGeneNoncode|NR_037181||-1.2716700|-0.4014778	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410312|NR_037181|lncRNA|Homosapiens||RefGeneNoncode|NR_037181||-1.2716700|-0.4014778	chr6	  1015974	  1017853	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49474_PI429285431	2.9074912	A	4.103322	P	0.436534989607928	0	lncRNA	53268-1_{1..406}	hg19_lincRNAsTranscripts_TCONS_l2_00024548 range=chr6:144662-148170 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024548 range=chr6:144662-148170 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	   144662	   145067	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24636_PI429285431	3.3320224	P	4.30114	P	0.510818400753516	0	lncRNA	26185-1_{1..456}	lnc-CLEC4E-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLEC4E-2:5	chr12	  8542866	  8543321	-	lnc-CLEC4E-2	lnc-CLEC4E-2:5	ENSG00000226091.2	RP11-90D4.2	CLEC6A	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0,hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10chr12:8532866-8553016"	NA	inter
CUST_19204_PI429285431	1.0743039	A	2.5164852	A	0.368010465650005	0	lncRNA	20874-1_{1..753}	lnc-RP11-680F20.6.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-680F20.6.1-1:1	chr11	125827795	125828547	+	lnc-RP11-680F20.6.1-1	lnc-RP11-680F20.6.1-1:1	ENSG00000264299.1	RP11-680F20.12	CDON	NA	chr11:125826713-125838547	inner
LNCA_21_P0007371	1.1730719	A	0.92062277	A	1.19122763652587	0	lncRNA	TCONS_00019701	NA	NA	NA	NA	XLOC_009499	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009499), lincRNA [TCONS_00019701]"	chr11:72866995-72866936	hs|11q13.4	Agilent_HUMAN_G3V2	TCONS_00019701	TCONS_00019701	chr11	 72866936	 72866995	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011492	7.968954	P	8.269009	P	0.812221431371265	0	lncRNA	TCONS_l2_00010367	NA	NA	NA	NA	XLOC_l2_005602	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005602), lincRNA [TCONS_l2_00010367]"	chr16:89265657-89265598	hs|16q24.3	Agilent_HUMAN_G3V2	TCONS_l2_00010367	TCONS_l2_00010367	chr16	 89265598	 89265657	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33924_PI429285431	0.90326667	A	0.91338384	A	0.993011843657315	0	lncRNA	35465-1_{1..760}	n340721|BC040885|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3184|NULL|-0.4688770|-0.3448811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340721|BC040885|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3184|NULL|-0.4688770|-0.3448811	chr5	166591938	166592697	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14370_PI429285431	0.8910744	A	0.89079434	A	1.00019414164244	0	lncRNA	16030-1_{1..376}	lnc-DDI1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DDI1-3:1	chr11	104229401	104229776	+	lnc-DDI1-3	lnc-DDI1-3:1	XLOC_009266	linc-GRIA4-2	NA	NA	NA	inter
CUST_29381_PI429285431	3.768499	P	3.6415188	P	1.09200555861544	0	lncRNA	31133-1_{1..222}	n332651|AB044751|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059421|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059421|-1.0698800|-0.0736421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332651|AB044751|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059421|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059421|-1.0698800|-0.0736421	chr8	 28218500	 28218721	-	NA	NA	NA	NA	ZNF395	NA	chr8:28208500-28243977	inner
CUST_8486_PI429285431	5.874921	P	6.1630926	P	0.818939284106329	0	lncRNA	10050-1_{1..1717}	lnc-UCHL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UCHL3-1:1	chr13	 76111887	 76113603	+	lnc-UCHL3-1	lnc-UCHL3-1:1	ENSG00000247181	ENST00000499458	COMMD6	"hg19_refFlat_COMMD6:range=chr13:76100725-761119415'pad=0,hg19_refFlat_COMMD6:range=chr13:76100725-761119415'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90chr13:76101887-76111991"	NA	inner
LNCA_21_P0009244	2.038976	A	1.4614983	A	1.49223804940047	0	lncRNA	TCONS_00025381	NA	NA	NA	NA	XLOC_012196	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012196), lincRNA [TCONS_00025381]"	chr17:38095929-38095988	hs|17q12	Agilent_HUMAN_G3V2	TCONS_00025381	TCONS_00025381	chr17	 38095929	 38095988	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3525_PI429285431	0.9848244	A	1.1833427	A	0.871445109505945	0	lncRNA	3494-1_{1..1525}	"transcript_id ""ENST00000423637.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423637.1"" | genecode_v17"	chr9	117881818	117883342	-	ENSG00000236461.1	ENST00000423637.1	RP11-523L1.2	RP11-523L1.2-001	TNC	NA	chr9:117871818-117880486	inter
CUST_22599_PI429285431	2.2867072	A	2.2831683	A	1.00245598957067	0	lncRNA	24183-1_{1..557}	lnc-AGPAT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AGPAT2-1:1	chr9	139554773	139555329	-	lnc-AGPAT2-1	lnc-AGPAT2-1:1	ENSG00000228401.2	RP11-251M1.1	EGFL7	NA	chr9:139557377-139564873	inter
CUST_32281_PI429285431	4.0571876	P	3.7608104	P	1.22805672365825	0	lncRNA	33967-1_{1..2183}	n338859|AK054973|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1283|NULL|0.1919380|-0.3694868	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338859|AK054973|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1283|NULL|0.1919380|-0.3694868	chr2	 63779649	 63781831	-	NA	NA	NA	NA	WDPCP	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30chr2:63769649-63791836"	NA	inner
CUST_39023_PI429285431	0.8873299	A	1.2504158	A	0.777499741125725	0	lncRNA	40003-1_{1..2984}	n385362|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wwb.1||-0.0394349|-0.3113151	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385362|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wwb.1||-0.0394349|-0.3113151	chr8	 12435814	 12438797	+	NA	NA	NA	NA	NA	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-20.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10"	NA	inter
CUST_39098_PI429285431	3.947719	P	3.508035	P	1.35630721682475	0	lncRNA	40074-1_{1..640}	n385650|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azs.1||-0.9951180|-0.1884197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385650|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azs.1||-0.9951180|-0.1884197	chr9	102121666	102122305	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36405_PI429285431	1.1093328	A	0.8986791	A	1.15721241000626	0	lncRNA	37623-1_{1..637}	n344922|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_471|NULL|-1.3699400|-0.3653012	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344922|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_471|NULL|-1.3699400|-0.3653012	chr6	109006489	109007125	-	NA	NA	NA	NA	FOXO3	NA	chr6:108996489-109005971	inter
CUST_17990_PI429285431	1.188269	A	2.568534	A	0.384148226957047	0	lncRNA	19724-1_{1..2041}	lnc-FAM190B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM190B-1:1	chr10	 86334152	 86336192	+	lnc-FAM190B-1	lnc-FAM190B-1:1	XLOC_008538	linc-OPN4-5	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
CUST_33658_PI429285431	0.8851993	A	0.8919409	A	0.995337980076408	0	lncRNA	35221-1_{1..1542}	n340422|BC036004|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2883|NULL|-1.3233500|-0.4470745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340422|BC036004|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2883|NULL|-1.3233500|-0.4470745	chr5	 25319942	 25321483	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43648_PI429285431	0.9225382	A	0.9102889	A	1.00852671485998	0	lncRNA	48405-1_{1..2488}	"gi|385198089|ref|NR_047648.1| Homo sapiens Fc fragment of IgG, low affinity IIc, receptor for (CD32) (gene/pseudogene) (FCGR2C), transcript variant 1, non-coding, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385198089|ref|NR_047648.1| Homo sapiens Fc fragment of IgG, low affinity IIc, receptor for (CD32) (gene/pseudogene) (FCGR2C), transcript variant 1, non-coding, non-coding RNA"	Chr1	161551129	161553616	+	9103	NR_047648.1	NA	NA	NA	NA	NA	inter
CUST_29806_PI429285431	8.445728	P	7.2563252	P	2.28058319461468	0	lncRNA	31569-1_{1..521}	n333520|BC039009|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000095457|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000095457|-0.9472630|-0.1722371	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333520|BC039009|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000095457|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000095457|-0.9472630|-0.1722371	chr20	 39657463	 39657983	+	NA	NA	NA	NA	TOP1	NA	chr20:39657462-39714935	inner
CUST_49195_PI429285431	5.1056805	P	5.592362	P	0.713664789372451	0	lncRNA	53018-1_{1..433}	hg19_lincRNAsTranscripts_TCONS_l2_00021353 range=chr4:152246102-152246795 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021353 range=chr4:152246102-152246795 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	152246102	152246534	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5083_PI429285431	1.0489572	A	1.2082757	A	0.895447962570023	0	lncRNA	5023-1_{1..389}	"transcript_id ""ENST00000605005.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605005.1"" | genecode_v17"	chr14	106663246	106663634	+	ENSG00000271201.1	ENST00000605005.1	AB019440.50	AB019440.50-001	NA	NA	NA	inter
LNCA_21_P0004827	0.8923738	A	0.8969148	A	0.99685736709401	0	lncRNA	TCONS_00011665	NA	NA	NA	NA	XLOC_005147	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005147), lincRNA [TCONS_00011665]"	chr6:6706840-6706899	hs|6p25.1	Agilent_HUMAN_G3V2	TCONS_00011665	TCONS_00011665	chr6	  6706840	  6706899	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46458_PI429285431	0.91134787	A	0.9095585	A	1.00124106625662	0	lncRNA	50660-2_{3001..3589}	"gi|372620343|ref|NR_045998.1| Homo sapiens cyclin D-type binding-protein 1 (CCNDBP1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|372620343|ref|NR_045998.1| Homo sapiens cyclin D-type binding-protein 1 (CCNDBP1), transcript variant 5, non-coding RNA"	Chr15	 43480466	 43481054	+	23582	NR_045998.1	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90"	NA	inter
CUST_10656_PI429285431	11.654993	P	12.114793	P	0.727087047341232	0	lncRNA	12188-1_{1..557}	lnc-CR381653.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CR381653.1-3:1	chr21	  9825968	  9826524	+	lnc-CR381653.1-3	lnc-CR381653.1-3:1	XLOC_013852	linc-POTED-8	NA	NA	NA	inter
CUST_42686_PI429285431	5.0507727	P	5.1818094	P	0.913175019912385	0	lncRNA	45607-1_{1..98}	ENST00000516293 ncrna:snoRNA chromosome:GRCh37:7:64791632:64791729:1 gene:ENSG00000252102 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516293 ncrna:snoRNA chromosome:GRCh37:7:64791632:64791729:1 gene:ENSG00000252102 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 64791632	 64791729	+	ENSG00000252102	ENST00000516293	NA	NA	NA	NA	NA	inter
CUST_39219_PI429285431	2.1445122	A	2.3706837	A	0.854900545769989	0	lncRNA	40192-2_{3001..4469}	n386029|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zdo.1||-1.1683300|-0.3334383	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386029|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zdo.1||-1.1683300|-0.3334383	chr12	  1014721	  1016189	+	NA	NA	NA	NA	RAD52	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40chr12:1021255-1026190"	NA	inner
CUST_22854_PI429285431	3.4326754	P	2.496786	A	1.91306965066687	0	lncRNA	24432-1_{1..581}	lnc-RCCD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RCCD1-1:1	chr15	 91516090	 91516670	+	lnc-RCCD1-1	lnc-RCCD1-1:1	ENSG00000258725.1	AC068831.8	PRC1	NA	chr15:91509268-91526336	inter
CUST_21532_PI429285431	1.6465137	A	1.0970292	A	1.46356264614594	0	lncRNA	23150-1_{1..769}	lnc-AC091132.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC091132.1-1:1	chr17	 43541124	 43541892	+	lnc-AC091132.1-1	lnc-AC091132.1-1:1	ENSG00000236234.1	AC091132.1	PLEKHM1	NA	chr17:43531124-43551431	inter
LNCA_21_P0011458	9.202589	P	9.081663	P	1.08743261186154	0	lncRNA	TCONS_l2_00010039	NA	NA	NA	NA	XLOC_l2_005415	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005415), lincRNA [TCONS_l2_00010039]"	chr16:20737688-20737629	hs|16p12.3	Agilent_HUMAN_G3V2	TCONS_l2_00010039	TCONS_l2_00010039	chr16	 20737629	 20737688	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10392_PI429285431	6.4939756	P	6.0430255	P	1.36694017133693	0	lncRNA	11920-1_{1..1431}	lnc-UQCRFS1-9:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UQCRFS1-9:9	chr19	 28284440	 28285870	-	lnc-UQCRFS1-9	lnc-UQCRFS1-9:9	XLOC_013282	linc-ZNF681-4	NA	NA	NA	inter
CUST_19223_PI429285431	2.5501003	A	3.1642861	A	0.653298485342351	0	lncRNA	20893-1_{1..1963}	lnc-MAPK15-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MAPK15-2:1	chr8	144780109	144782071	+	lnc-MAPK15-2	lnc-MAPK15-2:1	ENSG00000181097.5	RP11-429J17.2	ZNF707	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr8:144770109-144777555"	NA	inter
CUST_6383_PI429285431	2.0863845	A	1.0471045	A	2.05520171609026	0	lncRNA	6310-1_{1..811}	"transcript_id ""ENST00000598131.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598131.1"" | genecode_v17"	chr19	 20615358	 20616168	+	ENSG00000269043.1	ENST00000598131.1	CTC-513N18.6	CTC-513N18.6-001	ZNF737	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90chr19:20605358-20721421"	NA	inter
CUST_43393_PI429285431	1.2810826	A	1.1282712	A	1.1117338137702	0	lncRNA	48207-2_{3001..3799}	"gi|299829196|ref|NR_033887.1| Homo sapiens uncharacterized LOC339505 (LOC339505), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|299829196|ref|NR_033887.1| Homo sapiens uncharacterized LOC339505 (LOC339505), non-coding RNA"	Chr1	 20689294	 20690092	-	339505	NR_033887.1	NA	NA	NA	NA	NA	inter
CUST_18129_PI429285431	0.89381146	A	0.88720006	A	1.00459318977513	0	lncRNA	19864-1_{1..427}	lnc-HLF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HLF-1:1	chr17	 53323645	 53324071	+	lnc-HLF-1	lnc-HLF-1:1	XLOC_012254	linc-HLF	NA	NA	NA	inter
CUST_24833_PI429285431	0.9013791	A	2.0880234	A	0.439323537062793	0	lncRNA	26373-1_{1..398}	lnc-RP11-17M16.1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-17M16.1.1-4:1	chr18	 74090028	 74090425	+	lnc-RP11-17M16.1.1-4	lnc-RP11-17M16.1.1-4:1	ENSG00000263982.1	RP11-504I13.3	ZNF516	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60chr18:74080028-74100230"	NA	inner
CUST_27749_PI429285431	1.4851768	A	1.0682707	A	1.33506140596678	0	lncRNA	29331-1_{1..404}	n324966|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079615|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079615|-1.1607700|-0.3112870	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324966|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079615|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079615|-1.1607700|-0.3112870	chr20	 46445472	 46445875	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42941_PI429285431	4.9905195	P	4.7333593	P	1.19512390665086	0	lncRNA	46061-1_{1..77}	ENST00000459475 ncrna:snoRNA chromosome:GRCh37:14:20794609:20794685:-1 gene:ENSG00000238344 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459475 ncrna:snoRNA chromosome:GRCh37:14:20794609:20794685:-1 gene:ENSG00000238344 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 20794609	 20794685	-	ENSG00000238344	ENST00000459475	NA	NA	CCNB1IP1	NA	chr14:20784609-20801457	inner
CUST_16896_PI429285431	0.907399	A	0.91027206	A	0.998010528189161	0	lncRNA	18604-1_{1..1314}	lnc-CALN1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CALN1-1:2	chr7	 69062220	 69063533	-	lnc-CALN1-1	lnc-CALN1-1:2	XLOC_006493	linc-SBDS-8	AUTS2	NA	chr7:69063905-69073004	inter
LNCA_21_P0005919	5.0309563	P	5.283185	P	0.839598386940501	0	lncRNA	TCONS_00015203	NA	NA	NA	NA	XLOC_006681	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006681), lincRNA [TCONS_00015203]"	chr8:928664-928723	hs|8p23.3	Agilent_HUMAN_G3V2	TCONS_00015203	TCONS_00015203	chr8	   928664	   928723	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19688_PI429285431	5.246088	P	5.393838	P	0.902657132472174	0	lncRNA	21345-1_{1..470}	lnc-PPP1R14D-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP1R14D-1:3	chr15	 41136377	 41136846	-	lnc-PPP1R14D-1	lnc-PPP1R14D-1:3	ENSG00000261183.1	RP11-532F12.5	SPINT1	NA	chr15:41136246-41146498	inner
CUST_36866_PI429285431	0.8891163	A	0.89642876	A	0.994944212701618	0	lncRNA	38025-1_{1..1053}	n345335|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_884|NULL|-1.3796500|-0.2939815	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345335|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_884|NULL|-1.3796500|-0.2939815	chr16	 74905264	 74906316	+	NA	NA	NA	NA	WDR59	NA	chr16:74907471-74916317	inter
LNCA_21_P0008558	2.6850462	A	3.2267876	P	0.686941238427377	0	lncRNA	BC104435	NA	BC104435	NA	NA	LOC145837	uncharacterized LOC145837	NA	THC2766963	NA	"BROAD Institute lincRNA (XLOC_011294), lincRNA [TCONS_00023446]"	chr15:69760529-69760588	hs|15q23	Agilent_HUMAN_G3V2	BC104435	BC104435	chr15	 69760529	 69760588	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37790_PI429285431	3.9942422	P	3.83708	P	1.11509157972371	0	lncRNA	38884-1_{1..3000}	n346298|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1848|NULL|-1.3013300|-0.3612458	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346298|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1848|NULL|-1.3013300|-0.3612458	chr3	165178149	165181148	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31044_PI429285431	1.1890221	A	1.0453572	A	1.10470786050351	0	lncRNA	32834-1_{1..540}	n337264|BC127844|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389463|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389463|1.5069500|-0.1004307	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337264|BC127844|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389463|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389463|1.5069500|-0.1004307	chr2	131331904	131332443	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13776_PI429285431	0.9009749	A	1.7392471	A	0.559313012368114	0	lncRNA	15419-1_{1..339}	lnc-DYDC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DYDC2-1:1	chr10	 82093932	 82094270	+	lnc-DYDC2-1	lnc-DYDC2-1:1	XLOC_008534	linc-DYDC2-1	DYDC1	NA	chr10:82083932-82104182	inter
CUST_16680_PI429285431	0.8821709	A	0.8849445	A	0.998079333824438	0	lncRNA	18385-1_{1..1688}	lnc-KLF6-5:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF6-5:6	chr10	  3529524	  3531211	-	lnc-KLF6-5	lnc-KLF6-5:6	XLOC_008695	linc-PITRM1-3	NA	NA	NA	inter
CUST_11123_PI429285431	7.6975274	P	7.496251	P	1.14971509611504	0	lncRNA	12681-1_{1..336}	lnc-GPR31-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR31-1:3	chr6	167653636	167653971	-	lnc-GPR31-1	lnc-GPR31-1:3	XLOC_005921	linc-GPR31-2	UNC93A	NA	chr6:167643636-167663833	inter
LNCA_21_P0014217	0.8889289	A	2.6974614	A	0.285481170913821	0	lncRNA	XR_133505	XR_133505	XR_133505	NA	NA	LOC100507278	uncharacterized LOC100507278	NA	THC2505091	NA	"PREDICTED: Homo sapiens hypothetical LOC100507278 (LOC100507278), miscRNA [XR_133505]"	chr8:141105145-141105086	hs|8q24.3	Agilent_HUMAN_G3V2	XR_133505	XR_133505	chr8	141105086	141105145	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20811_PI429285431	5.395609	P	5.430196	P	0.976311209176002	0	lncRNA	22442-1_{1..791}	lnc-TCIRG1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCIRG1-1:2	chr11	 67820826	 67821616	+	lnc-TCIRG1-1	lnc-TCIRG1-1:2	ENSG00000255031.1	RP11-802E16.3	CHKA	NA	chr11:67820326-67831161	inner
CUST_11501_PI429285431	7.5592456	P	7.6070085	P	0.967435309895867	0	lncRNA	13070-1_{1..651}	lnc-PPP1R3D-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP1R3D-2:3	chr20	 58908937	 58909587	-	lnc-PPP1R3D-2	lnc-PPP1R3D-2:3	XLOC_013826	linc-PPP1R3D-2	NA	NA	NA	inter
CUST_2618_PI429285431	0.8987608	A	0.8965388	A	1.00154135971084	0	lncRNA	2605-1_{1..2081}	"transcript_id ""ENST00000448740.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000448740.2"" | genecode_v17"	chr6	116575370	116577450	+	ENSG00000237021.2	ENST00000448740.2	RP3-486I3.7	RP3-486I3.7-001	NT5DC1	NA	chr6:116565370-116566853	inter
LNCA_21_P0004066	0.8909434	A	1.7715429	A	0.543141686324508	0	lncRNA	ENST00000446720	NA	NA	NA	NA	XLOC_004568	NA	ENST00000446720	NA	NA	"BROAD Institute lincRNA (XLOC_004568), lincRNA [TCONS_00009523]"	chr5:135855915-135855974	hs|5q31.1	Agilent_HUMAN_G3V2	ENST00000446720	ENST00000446720	chr5	135855915	135855974	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_628_PI429285431	1.1474328	A	1.1622446	A	0.98978576584332	0	lncRNA	620-1_{1..1080}	"transcript_id ""ENST00000589588.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589588.1"" | genecode_v17"	chr2	   308833	   309912	-	ENSG00000235779.2	ENST00000589588.1	AC079779.5	AC079779.5-018	NA	NA	NA	inter
CUST_6653_PI429285431	1.05347	A	1.4381922	A	0.765926468305289	0	lncRNA	6599-1_{1..455}	"transcript_id ""ENST00000412241.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412241.1"" | genecode_v17"	chr20	 18304299	 18304753	-	ENSG00000230010.1	ENST00000412241.1	RP4-568F9.6	RP4-568F9.6-002	ZNF133	NA	chr20:18294299-18297640	inter
LNCA_21_P0012896	0.89235234	A	0.8908205	A	1.00106235447625	0	lncRNA	THC2775530	NA	NA	NA	NA	XLOC_l2_011987	NA	NA	THC2775530	NA	"BROAD Institute lincRNA (XLOC_l2_011987), lincRNA [TCONS_l2_00022830]"	chr5:034124290-034124231	hs|5p13.2	Agilent_HUMAN_G3V2	THC2775530	THC2775530	chr5	 34124231	 34124290	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51027_PI429285431	1.5359333	A	2.3925426	A	0.552248959310973	0	lncRNA	54670-1_{1..600}	hg19_lincRNAsTranscripts_TCONS_l2_00006694 range=chr13:19702683-19705456 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006694 range=chr13:19702683-19705456 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 19702683	 19703282	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32080_PI429285431	0.89802825	A	0.90650684	A	0.994140324506488	0	lncRNA	33787-1_{1..462}	n338642|U50539|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1056|NULL|-1.0860800|-0.3966242	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338642|U50539|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1056|NULL|-1.0860800|-0.3966242	chr13	 33242537	 33242998	-	NA	NA	NA	NA	PDS5B	NA	chr13:33232537-33252992	inner
CUST_11293_PI429285431	1.8050404	A	2.248353	A	0.735444001267767	0	lncRNA	12854-1_{1..220}	lnc-CACNG3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CACNG3-1:1	chr16	 24249202	 24249421	+	lnc-CACNG3-1	lnc-CACNG3-1:1	XLOC_011673	linc-CACNG3-3	NA	NA	NA	inter
CUST_15622_PI429285431	2.1741157	A	2.6634448	A	0.712356289571045	0	lncRNA	17310-1_{1..940}	lnc-C22orf26-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C22orf26-2:10	chr22	 46439820	 46440759	-	lnc-C22orf26-2	lnc-C22orf26-2:10	XLOC_014404	linc-WNT7B-2	C22orf26	NA	chr22:46446339-46450024	inter
LNCA_21_P0010799	0.89602506	A	0.8942914	A	1.00120240384961	0	lncRNA	TCONS_l2_00002837	NA	NA	NA	NA	XLOC_l2_001421	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001421), lincRNA [TCONS_l2_00002837]"	chr10:981095-981154	hs|10p15.3	Agilent_HUMAN_G3V2	TCONS_l2_00002837	TCONS_l2_00002837	chr10	   981095	   981154	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34093_PI429285431	0.88523483	A	0.8872713	A	0.998589422362388	0	lncRNA	35620-1_{1..3000}	n340916|BX537550|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3381|NULL|1.8330300|-0.1877632	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340916|BX537550|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3381|NULL|1.8330300|-0.1877632	chr17	 78440634	 78443633	-	NA	NA	NA	NA	NPTX1	NA	chr17:78440633-78450404	inner
LNCA_21_P0004213	1.276187	A	1.2185003	A	1.04079555084414	0	lncRNA	TCONS_00009852	NA	NA	NA	NA	XLOC_004266	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004266), lincRNA [TCONS_00009852]"	chr5:4644558-4644617	hs|5p15.32	Agilent_HUMAN_G3V2	TCONS_00009852	TCONS_00009852	chr5	  4644558	  4644617	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006693	4.2929516	P	4.171188	P	1.08806413688031	0	lncRNA	ENST00000453889	NA	NA	NA	NA	XLOC_008556	NA	ENST00000453889	NA	NA	"BROAD Institute lincRNA (XLOC_008556), lincRNA [TCONS_00017853]"	chr10:92221143-92221202	hs|10q23.31	Agilent_HUMAN_G3V2	ENST00000453889	ENST00000453889	chr10	 92221143	 92221202	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3388533	0.8956882	A	0.89412576	A	1.00108358753801	0	lncRNA	ENST00000554904	XR_110268	XR_110268	NA	Hs.652058	NA	NA	ENST00000554904	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC728755 (LOC728755), miscRNA [XR_110268]"	chr14:27791091-27791032	hs|14q12	Agilent_HUMAN_G3V2	ENST00000554904	ENST00000554904	chr14	 27791032	 27791091	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014211	3.2136862	P	3.3894072	P	0.885324959304842	0	lncRNA	XR_108873	XR_108873	XR_108873	NA	Hs.224506	FLJ45248	FLJ45248 protein	NA	THC2482449	NA	"PREDICTED: Homo sapiens FLJ45248 protein (FLJ45248), miscRNA [XR_108873]"	chr8:103819758-103819817	hs|8q22.3	Agilent_HUMAN_G3V2	XR_108873	XR_108873	chr8	103819758	103819817	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29294_PI429285431	1.134065	A	1.4220862	A	0.819024662433125	0	lncRNA	31045-1_{1..422}	n332454|EU076746|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000484308|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000484308|1.3934900|-0.4344158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332454|EU076746|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000484308|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000484308|1.3934900|-0.4344158	chr12	 69202797	 69203218	+	NA	NA	NA	NA	MDM2	NA	chr12:69201971-69239212	inner
CUST_19940_PI429285431	0.9144422	A	0.90035486	A	1.00981242926029	0	lncRNA	21595-1_{1..505}	lnc-SIRT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SIRT1-2:1	chr10	 68814374	 68814878	+	lnc-SIRT1-2	lnc-SIRT1-2:1	ENSG00000225299.1	RP11-344A5.1	CTNNA3	NA	chr10:68804374-68824786	inner
LNCA_21_P0012747	2.427865	A	0.9188007	A	2.84625377536202	0	lncRNA	ENST00000507145	NA	NA	NA	NA	XLOC_l2_010855	NA	ENST00000507145	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010855), lincRNA [TCONS_l2_00021725]"	chr4:139345392-139345451	hs|4q28.3	Agilent_HUMAN_G3V2	ENST00000507145	ENST00000507145	chr4	139345392	139345451	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15468_PI429285431	0.89626104	A	0.9061769	A	0.993150415674424	0	lncRNA	17156-1_{1..637}	lnc-TGFBRAP1-6:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGFBRAP1-6:10	chr2	105446427	105447063	-	lnc-TGFBRAP1-6	lnc-TGFBRAP1-6:10	XLOC_002241	linc-MFSD9-15	NA	NA	NA	inter
CUST_50795_PI429285431	17.328598	P	17.337307	P	0.993981564979839	0	lncRNA	54449-1_{1..736}	hg19_lincRNAsTranscripts_TCONS_l2_00004424 range=chr11:17249828-17250737 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004424 range=chr11:17249828-17250737 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 17249828	 17250563	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3358005	1.7881266	A	1.2173746	A	1.48529757531746	0	lncRNA	XR_108436	XR_108436	XR_108436	   440934	Hs.724706	LOC440934	uncharacterized LOC440934	NA	THC2754240	NA	"PREDICTED: Homo sapiens hypothetical LOC440934 (LOC440934), miscRNA [XR_108436]"	chr2:223183434-223183494	hs|2q36.1	Agilent_HUMAN_G3V2	XR_108436	XR_108436	chr2	223183434	223183494	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001299	7.039771	P	7.102265	P	0.95760726326694	0	lncRNA	TCONS_00000947	NA	NA	NA	NA	XLOC_000202	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000202), lincRNA [TCONS_00000947]"	chr1:54982754-54982813	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_00000947	TCONS_00000947	chr1	 54982754	 54982813	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7929_PI429285431	1.086794	A	0.90225375	A	1.13645475646834	0	lncRNA	9541-1_{1..2043}	lnc-GIMAP8-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-GIMAP8-1:2	chr7	150144164	150146206	+	lnc-GIMAP8-1	lnc-GIMAP8-1:2	ENSG00000242258	RP11-511P7.2	GIMAP8	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30chr7:150147962-150155228"	NA	inter
CUST_47400_PI429285431	4.1158524	P	4.2381115	P	0.918747866657897	0	lncRNA	51444-2_{3001..3783}	"gi|397139747|ref|XR_109689.2| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 322 (LINC00322), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139747|ref|XR_109689.2| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 322 (LINC00322), misc_RNA"	NA	NA	NA	NA	NA	XR_109689.2	NA	NA	NA	NA	NA	Unknown
CUST_48087_PI429285431	1.6696618	A	2.4981077	A	0.563135536611116	0	lncRNA	51963-1_{1..1834}	"gi|410170145|ref|XR_112814.3| PREDICTED: Homo sapiens uncharacterized LOC100507336, transcript variant 3 (LOC100507336), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410170145|ref|XR_112814.3| PREDICTED: Homo sapiens uncharacterized LOC100507336, transcript variant 3 (LOC100507336), misc_RNA"	NA	NA	NA	NA	NA	XR_112814.3	NA	NA	NA	NA	NA	Unknown
CUST_14025_PI429285431	5.148706	P	5.218659	P	0.952669033511565	0	lncRNA	15673-2_{3001..5728}	lnc-TCF12-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF12-1:4	chr15	 57598298	 57601025	+	lnc-TCF12-1	lnc-TCF12-1:4	XLOC_011264	linc-CGNL1-2	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80"	NA	inter
CUST_20859_PI429285431	5.5184917	P	5.7837305	P	0.832060997625061	0	lncRNA	22490-1_{1..580}	lnc-DSCAM-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DSCAM-1:2	chr21	 42519276	 42519855	-	lnc-DSCAM-1	lnc-DSCAM-1:2	ENSG00000226496.1	LINC00323	NA	NA	NA	inter
LNCA_21_P0001063	0.909611	A	0.9252125	A	0.989244126819507	0	lncRNA	ENST00000420347	NA	NA	NA	NA	XLOC_000562	NA	ENST00000420347	NA	NA	"BROAD Institute lincRNA (XLOC_000562), lincRNA [TCONS_00000392]"	chr1:218205302-218206972	hs|1q41	Agilent_HUMAN_G3V2	ENST00000420347	ENST00000420347	chr1	218205302	218206972	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41835_PI429285431	8.756352	P	8.665081	P	1.06530829518449	0	lncRNA	43453-1_{1..90}	ENST00000408729 ncrna:miRNA chromosome:GRCh37:16:2140196:2140285:-1 gene:ENSG00000221656 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408729 ncrna:miRNA chromosome:GRCh37:16:2140196:2140285:-1 gene:ENSG00000221656 gene_biotype:miRNA transcript_biotype:miRNA	chr16	  2140196	  2140285	-	ENSG00000221656	ENST00000408729	NA	NA	TSC2	NA	chr16:2130196-2138713	inner
CUST_39034_PI429285431	0.8985323	A	0.9899237	A	0.938617068018377	0	lncRNA	40014-1_{1..1795}	n385414|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xyw.2||-0.0421041|-0.3064273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385414|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xyw.2||-0.0421041|-0.3064273	chr8	 72315676	 72317470	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	inter
CUST_2619_PI429285431	0.88897717	A	1.143118	A	0.838486330833445	0	lncRNA	2606-1_{1..271}	"transcript_id ""ENST00000450059.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450059.1"" | genecode_v17"	chr6	121711036	121711306	+	ENSG00000234024.1	ENST00000450059.1	SIGLECP3	SIGLECP3-001	NA	NA	NA	inter
CUST_3683_PI429285431	4.3363237	P	3.8944478	P	1.35836943317537	0	lncRNA	3651-1_{1..369}	"transcript_id ""ENST00000437899.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437899.1"" | genecode_v17"	chr10	 46937463	 46937831	-	ENSG00000229227.3	ENST00000437899.1	RP11-38L15.2	RP11-38L15.2-002	SYT15	NA	chr10:46955444-46961699	inter
CUST_4819_PI429285431	3.365969	P	3.5814352	P	0.861267800170207	0	lncRNA	4762-1_{1..682}	"transcript_id ""ENST00000557518.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557518.1"" | genecode_v17"	chr14	 51771134	 51771815	-	ENSG00000258955.1	ENST00000557518.1	LINC00519	LINC00519-001	NA	NA	NA	inter
CUST_23031_PI429285431	0.8842763	A	0.8897935	A	0.996183071436675	0	lncRNA	24602-1_{1..902}	lnc-LIF-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIF-2:3	chr22	 30476117	 30477018	-	lnc-LIF-2	lnc-LIF-2:3	ENSG00000227117.2	CTA-85E5.10	HORMAD2	"hg19_refFlat_MTMR3:range=chr22:30367049-304217905'pad=0,hg19_refFlat_MTMR3:range=chr22:30367049-304217905'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60chr22:30466117-30486219"	NA	inter
CUST_36768_PI429285431	8.814358	P	9.075975	P	0.834152461366659	0	lncRNA	37940-1_{1..2249}	n345247|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_796|NULL|-1.3156400|-0.2857926	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345247|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_796|NULL|-1.3156400|-0.2857926	chr14	 97409901	 97412149	-	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40"	NA	inter
CUST_42896_PI429285431	2.1631856	A	1.4483703	A	1.64127308135851	0	lncRNA	45989-1_{1..69}	ENST00000391000 ncrna:snoRNA chromosome:GRCh37:14:23225970:23226038:-1 gene:ENSG00000212302 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391000 ncrna:snoRNA chromosome:GRCh37:14:23225970:23226038:-1 gene:ENSG00000212302 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 23225970	 23226038	-	ENSG00000212302	ENST00000391000	NA	NA	OXA1L	NA	chr14:23235731-23236038	inter
CUST_28273_PI429285431	3.233977	P	3.6390777	P	0.755183579187502	0	lncRNA	29908-1_{1..413}	n325567|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000131039|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000131039|-0.2197860|-0.2135483	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325567|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000131039|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000131039|-0.2197860|-0.2135483	chr17	 15650704	 15651116	-	NA	NA	NA	NA	TBC1D26	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr17:15640704-15648098"	NA	inter
CUST_32630_PI429285431	6.465542	P	6.5601416	P	0.93653213287383	0	lncRNA	34289-1_{1..1155}	n339254|CR606596|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1686|NULL|-1.0350800|-0.1857253	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339254|CR606596|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1686|NULL|-1.0350800|-0.1857253	chr3	 13858241	 13859395	-	NA	NA	NA	NA	WNT7A	NA	chr3:13860082-13869396	inter
CUST_37761_PI429285431	1.1244863	A	1.4836613	A	0.779610269559999	0	lncRNA	38858-1_{1..713}	n346269|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1819|NULL|-1.2854500|-0.3117991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346269|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1819|NULL|-1.2854500|-0.3117991	chr11	116190933	116191645	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43010_PI429285431	2.973228	A	3.7527483	P	0.582560463963069	0	lncRNA	46211-1_{1..126}	ENST00000408656 ncrna:snRNA chromosome:GRCh37:6:10222269:10222394:1 gene:ENSG00000221583 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408656 ncrna:snRNA chromosome:GRCh37:6:10222269:10222394:1 gene:ENSG00000221583 gene_biotype:snRNA transcript_biotype:snRNA	chr6	 10222269	 10222394	+	ENSG00000221583	ENST00000408656	NA	NA	TFAP2A	NA	chr6:10214083-10232394	inter
CUST_2104_PI429285431	0.90970445	A	1.0960135	A	0.878851275742159	0	lncRNA	2095-1_{1..448}	"transcript_id ""ENST00000515123.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515123.1"" | genecode_v17"	chr5	 19036015	 19036462	-	ENSG00000251487.1	ENST00000515123.1	RP11-124N3.2	RP11-124N3.2-001	NA	NA	NA	inter
CUST_25294_PI429285431	3.1798754	A	3.3118417	A	0.912586805464409	0	lncRNA	26825-1_{1..324}	lnc-CEP170-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CEP170-1:13	chr1	243220951	243221274	-	lnc-CEP170-1	lnc-CEP170-1:13	ENSG00000214837.3	RP11-261C10.3	NA	NA	NA	inter
CUST_10025_PI429285431	1.3387243	A	1.485508	A	0.903261924014941	0	lncRNA	11551-1_{1..304}	lnc-PELI1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PELI1-5:2	chr2	 64565191	 64565494	-	lnc-PELI1-5	lnc-PELI1-5:2	XLOC_002125	linc-PELI1-4	NA	NA	NA	inter
CUST_43650_PI429285431	0.88474286	A	0.8886986	A	0.997261845573981	0	lncRNA	48407-1_{1..1510}	"gi|363001612|ref|NR_045630.1| Homo sapiens regulator of G-protein signaling 5 (RGS5), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|363001612|ref|NR_045630.1| Homo sapiens regulator of G-protein signaling 5 (RGS5), transcript variant 5, non-coding RNA"	Chr1	163273996	163275505	-	8490	NR_045630.1	NA	NA	NA	NA	NA	inter
CUST_34354_PI429285431	1.6464708	A	0.8930657	A	1.68576694566886	0	lncRNA	35843-1_{1..895}	n341224|BC031962|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3692|NULL|-0.8740110|-0.2197222	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341224|BC031962|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3692|NULL|-0.8740110|-0.2197222	chr7	 36820612	 36821506	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35007_PI429285431	6.8026533	P	7.0074444	P	0.867664314500932	0	lncRNA	36421-1_{1..1600}	n341938|AK130110|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4419|NULL|-0.8423330|-0.2150725	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341938|AK130110|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4419|NULL|-0.8423330|-0.2150725	chr12	 58230875	 58232474	+	NA	NA	NA	NA	CTDSP2	NA	chr12:58220875-58240747	inner
CUST_17306_PI429285431	0.92090744	A	0.93730533	A	0.988698199438957	0	lncRNA	19024-1_{1..806}	lnc-RIMBP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RIMBP2-2:1	chr12	130819865	130820670	-	lnc-RIMBP2-2	lnc-RIMBP2-2:1	XLOC_010265	linc-TMEM132D-2	PIWIL1	NA	chr12:130822433-130830477	inter
CUST_25500_PI429285431	1.8899338	A	2.2396526	A	0.784737038431525	0	lncRNA	27030-1_{1..440}	lnc-RBP5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBP5-2:1	chr12	  7341342	  7341781	-	lnc-RBP5-2	lnc-RBP5-2:1	ENSG00000255572.1	RP11-273B20.3	PEX5	NA	chr12:7341759-7351665	inter
CUST_15007_PI429285431	0.8843044	A	0.88870513	A	0.996954294009802	0	lncRNA	16669-1_{1..396}	lnc-FAM75D1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM75D1-4:2	chr9	 85069822	 85070217	+	lnc-FAM75D1-4	lnc-FAM75D1-4:2	XLOC_007422	linc-C9orf103-3	NA	NA	NA	inter
LNCA_21_P0007596	2.4940567	A	1.6569521	A	1.78646122415683	0	lncRNA	TCONS_00020498	NA	NA	NA	NA	XLOC_009819	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009819), lincRNA [TCONS_00020498]"	chr12:85382758-85382817	hs|12q21.31	Agilent_HUMAN_G3V2	TCONS_00020498	TCONS_00020498	chr12	 85382758	 85382817	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35713_PI429285431	7.601128	P	6.953747	P	1.56632218647648	0	lncRNA	37133-1_{1..1822}	n342880|CR592591|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5386|NULL|-0.9180020|-0.2953889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342880|CR592591|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5386|NULL|-0.9180020|-0.2953889	chr9	136895486	136897307	-	NA	NA	NA	NA	BRD3	NA	chr9:136895427-136907308	inner
CUST_32273_PI429285431	0.8841221	A	0.8851392	A	0.99929524845676	0	lncRNA	33961-1_{1..3000}	n338851|BC040311|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1274|NULL|-1.2204700|-0.4613224	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n338851|BC040311|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1274|NULL|-1.2204700|-0.4613224	chr2	 56301788	 56304787	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9792_PI429285431	0.8940455	A	0.8907412	A	1.00229299112106	0	lncRNA	11309-1_{1..502}	lnc-ADCY2-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADCY2-5:3	chr5	  7277743	  7278244	+	lnc-ADCY2-5	lnc-ADCY2-5:3	XLOC_004276	linc-ADCY2-5	NA	NA	NA	inter
CUST_45275_PI429285431	3.2378154	P	0.9034775	A	5.04319461698124	0	lncRNA	49723-2_{3001..4653}	"gi|325910846|ref|NR_037944.1| Homo sapiens WNT1 inducible signaling pathway protein 1 (WISP1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|325910846|ref|NR_037944.1| Homo sapiens WNT1 inducible signaling pathway protein 1 (WISP1), transcript variant 5, non-coding RNA"	Chr8	134206282	134207934	+	8840	NR_037944.1	NA	NA	NA	NA	NA	inter
CUST_32548_PI429285431	0.8947257	A	0.9063214	A	0.991994687790384	0	lncRNA	34213-1_{1..2606}	n339162|BC008479|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1593|NULL|-0.9861430|-0.3194871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339162|BC008479|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1593|NULL|-0.9861430|-0.3194871	chr2	227824678	227827283	+	NA	NA	NA	NA	RHBDD1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50chr2:227814678-227837258"	NA	inner
CUST_43324_PI429285431	3.05208	P	2.1656618	A	1.84858092306124	0	lncRNA	48155-1_{1..1987}	ENST00000435338 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:29958305:30018309:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>ENST00000435338 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:29958305:30018309:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	chrHSCHR6_MHC_QBL	 29958305	 29960291	-	ENSG00000235814	ENST00000435338	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00807384	6.8642306	P	7.025304	P	0.894359398299237	0	lncRNA	XR_132651	XR_132651	XR_132651	NA	NA	LOC100506694	uncharacterized LOC100506694	NA	THC2516977	NA	"PREDICTED: Homo sapiens hypothetical LOC100506694, transcript variant 4 (LOC100506694), miscRNA [XR_132651]"	chr19:28288874-28288933	hs|19q11	Agilent_HUMAN_G3V2	XR_132651	XR_132651	chr19	 28288874	 28288933	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32865_PI429285431	4.889402	P	5.6220827	P	0.601784686389139	0	lncRNA	34494-1_{1..1831}	n339526|AL355711|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1967|NULL|-0.9752060|-0.1971431	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339526|AL355711|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1967|NULL|-0.9752060|-0.1971431	chr21	 43719103	 43720933	+	NA	NA	NA	NA	ABCG1	NA	chr21:43709103-43717354	inter
CUST_37906_PI429285431	1.5397465	A	0.90852064	A	1.54888052051167	0	lncRNA	38995-1_{1..541}	n346445|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1995|NULL|-1.3476500|-0.2993078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346445|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1995|NULL|-1.3476500|-0.2993078	chr15	 35348710	 35349250	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_217_PI429285431	3.6527276	P	3.6202993	P	1.02273210907617	0	lncRNA	207-1_{1..2644}	"transcript_id ""ENST00000434244.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434244.1"" | genecode_v17"	chr1	 44509600	 44512243	+	ENSG00000230615.1	ENST00000434244.1	RP5-1198O20.4	RP5-1198O20.4-001	NA	"hg19_refFlat_KRT8:range=chr12:53291212-533202335'pad=0,hg19_refFlat_KRT8:range=chr12:53291212-533202335'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00;hg19_refFlat_KRT8:range=chr12:53291212-532987655'pad=0,hg19_refFlat_KRT8:range=chr12:53291212-532987655'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00"	NA	inter
LNCA_21_P0012031	0.8869012	A	0.8859326	A	1.00067160778667	0	lncRNA	ENST00000416350	NA	NA	NA	NA	XLOC_l2_007595	NA	ENST00000416350	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007595), lincRNA [TCONS_l2_00015519]"	chr2:151424532-151424591	hs|2q23.3	Agilent_HUMAN_G3V2	ENST00000416350	ENST00000416350	chr2	151424532	151424591	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47368_PI429285431	1.3424833	A	0.90726376	A	1.35211657372831	0	lncRNA	51417-2_{3001..3548}	"gi|336455061|ref|NR_038879.1| Homo sapiens GCFC1 antisense RNA 1 (GCFC1-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336455061|ref|NR_038879.1| Homo sapiens GCFC1 antisense RNA 1 (GCFC1-AS1), transcript variant 1, non-coding RNA"	Chr21	 34103425	 34103972	+	100506215	NR_038879.1	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_GCFC1:range=chr21:34107261-341439795'pad=0,hg19_refFlat_GCFC1:range=chr21:34107261-341439795'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20"	NA	inter
CUST_4963_PI429285431	5.4280014	P	5.581912	P	0.898810821817287	0	lncRNA	4907-1_{1..725}	"transcript_id ""ENST00000602953.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602953.1"" | genecode_v17"	chr14	 96110845	 96111569	+	ENSG00000270038.1	ENST00000602953.1	RP11-1070N10.7	RP11-1070N10.7-001	NA	NA	NA	inter
LNCA_21_P0010745	0.8876336	A	0.8864548	A	1.00081741579879	0	lncRNA	ENST00000436377	NA	NA	NA	NA	XLOC_l2_000654	NA	ENST00000436377	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000654), lincRNA [TCONS_l2_00002327]"	chr1:227613553-227613612	hs|1q42.13	Agilent_HUMAN_G3V2	ENST00000436377	ENST00000436377	chr1	227613553	227613612	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15712_PI429285431	5.7141347	P	5.8854322	P	0.88804365233616	0	lncRNA	17400-1_{1..3000}	lnc-QSOX2-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-QSOX2-1:13	chr9	139157802	139160801	-	lnc-QSOX2-1	lnc-QSOX2-1:13	XLOC_007895	linc-QSOX2	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50"	NA	inter
LNCA_21_P0014258	0.8886895	A	0.8873459	A	1.00093174635799	0	lncRNA	XR_109032	XR_109032	XR_109032	NA	Hs.723110	LOC100289424	uncharacterized LOC100289424	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100289424 (LOC100289424), miscRNA [XR_109032]"	chr10:134777731-134777672	hs|10q26.3	Agilent_HUMAN_G3V2	XR_109032	XR_109032	chr10	134777672	134777731	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17723_PI429285431	6.800065	P	7.2124233	P	0.751394103649661	0	lncRNA	19453-1_{1..578}	lnc-SAMD11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SAMD11-2:1	chr1	   841182	   841759	+	lnc-SAMD11-2	lnc-SAMD11-2:1	XLOC_000010	linc-SAMD11-2	NA	NA	NA	inter
CUST_36090_PI429285431	0.8887395	A	0.88977057	A	0.999285572061794	0	lncRNA	37392-1_{1..3000}	n344677|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_226|NULL|-1.2355500|-0.2200003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n344677|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_226|NULL|-1.2355500|-0.2200003	chr8	128806799	128809798	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60"	NA	inter
CUST_49440_PI429285431	0.885009	A	0.9141753	A	0.97998644542479	0	lncRNA	53241-2_{3001..3259}	hg19_lincRNAsTranscripts_TCONS_l2_00023282 range=chr5:178193480-178246537 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023282 range=chr5:178193480-178246537 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	178196480	178196738	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17900_PI429285431	4.3119392	P	4.567445	P	0.837693393032257	0	lncRNA	19633-1_{1..3000}	lnc-TRNP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRNP1-1:2	chr1	 27386505	 27389504	+	lnc-TRNP1-1	lnc-TRNP1-1:2	XLOC_000105	linc-WDTC1	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-24.70;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-28.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.81;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.22;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40"	NA	inter
CUST_9374_PI429285431	0.8855319	A	0.8860626	A	0.999632214440973	0	lncRNA	10876-1_{1..335}	lnc-GMNC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GMNC-1:1	chr3	190511365	190511699	-	lnc-GMNC-1	lnc-GMNC-1:1	XLOC_003372	linc-TMEM207-3	NA	NA	NA	inter
CUST_40291_PI429285431	3.961108	P	4.252036	P	0.817376119931008	0	lncRNA	41095-1_{1..2202}	n408241|NR_028408|lncRNA|Homosapiens||RefGeneNoncode|NR_028408||2.2029700|-0.2752674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408241|NR_028408|lncRNA|Homosapiens||RefGeneNoncode|NR_028408||2.2029700|-0.2752674	chr12	 46119502	 46121703	-	NA	NA	NA	NA	ARID2	NA	chr12:46123620-46131704	inter
CUST_34471_PI429285431	1.7935188	A	2.3953428	A	0.658920355230488	0	lncRNA	35940-1_{1..3000}	n341347|D83492|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3816|NULL|17.5249000|-0.0658758	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341347|D83492|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3816|NULL|17.5249000|-0.0658758	chr7	142552822	142555821	+	NA	NA	NA	NA	EPHB6	NA	chr7:142552792-142568847	inner
CUST_25363_PI429285431	4.4820676	P	4.1808124	P	1.23221602229072	0	lncRNA	26893-1_{1..485}	lnc-TCIRG1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCIRG1-2:3	chr11	 67897646	 67898130	+	lnc-TCIRG1-2	lnc-TCIRG1-2:3	ENSG00000255236.1	CTD-2655K5.1	CHKA	NA	chr11:67887646-67888858	inter
CUST_31395_PI429285431	6.905078	P	7.108815	P	0.868298502001272	0	lncRNA	33172-1_{1..1153}	n337862|CR623208|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|245|NULL|-0.9746310|-0.1009125	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337862|CR623208|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|245|NULL|-0.9746310|-0.1009125	chrX	134166391	134167543	-	NA	NA	NA	NA	FAM127A	"hg19_refFlat_FAM127B:range=chrX:134185339-1341861385'pad=0,hg19_refFlat_FAM127B:range=chrX:134185339-1341861385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_FAM127A:range=chrX:134166414-1341667555'pad=0,hg19_refFlat_FAM127A:range=chrX:134166414-1341667555'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.90;hg19_refFlat_FAM127B:range=chrX:134185797-1341861385'pad=0,hg19_refFlat_FAM127B:range=chrX:134185797-1341861385'pad=0 3'pad=0 strand=- repeatMasking=none,-94.10;hg19_refFlat_FAM127C:range=chrX:134156148-1341564895'pad=0,hg19_refFlat_FAM127C:range=chrX:134156148-1341564895'pad=0 3'pad=0 strand=- repeatMasking=none,-100.20chrX:134166333-134167576"	NA	inner
CUST_43476_PI429285431	1.4392395	A	0.8825714	A	1.47086832550902	0	lncRNA	48276-1_{1..3000}	"gi|313851016|ref|NR_037639.1| Homo sapiens HEATR8-TTC4 readthrough (HEATR8-TTC4), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|313851016|ref|NR_037639.1| Homo sapiens HEATR8-TTC4 readthrough (HEATR8-TTC4), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NR_037639.1	NA	NA	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10"	NA	Unknown
LNCA_21_P0008531	11.542055	P	12.66185	P	0.460159207068794	0	lncRNA	TCONS_00023094	NA	NA	NA	NA	XLOC_010996	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010996), lincRNA [TCONS_00023094]"	chr14:36623792-36623733	hs|14q13.3	Agilent_HUMAN_G3V2	TCONS_00023094	TCONS_00023094	chr14	 36623733	 36623792	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3957_PI429285431	0.89468527	A	0.90319645	A	0.994117867461639	0	lncRNA	3927-1_{1..772}	"transcript_id ""ENST00000412599.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412599.1"" | genecode_v17"	chr11	 60383209	 60383980	+	ENSG00000181995.7	ENST00000412599.1	LINC00301	LINC00301-002	NA	NA	NA	inter
CUST_46628_PI429285431	1.8617607	A	2.1989515	A	0.791581170373778	0	lncRNA	50804-1_{1..661}	"gi|310123547|ref|XR_109285.1| PREDICTED: Homo sapiens uncharacterized LOC100507092 (LOC100507092), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310123547|ref|XR_109285.1| PREDICTED: Homo sapiens uncharacterized LOC100507092 (LOC100507092), misc_RNA"	NA	NA	NA	NA	NA	XR_109285.1	NA	NA	NA	NA	NA	Unknown
CUST_378_PI429285431	0.9169305	A	0.92133677	A	0.996950465677391	0	lncRNA	370-1_{1..653}	"transcript_id ""ENST00000439394.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439394.1"" | genecode_v17"	chr1	119542967	119543619	-	ENSG00000226172.2	ENST00000439394.1	RP4-712E4.1	RP4-712E4.1-001	NA	NA	NA	inter
CUST_17052_PI429285431	0.89753366	A	0.89454126	A	1.00207632620924	0	lncRNA	18762-1_{1..3000}	lnc-AMOTL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AMOTL2-2:1	chr3	134058753	134061752	-	lnc-AMOTL2-2	lnc-AMOTL2-2:1	XLOC_003261	linc-RYK	NA	NA	NA	inter
CUST_43107_PI429285431	2.4027944	A	3.2764635	P	0.545757100332679	0	lncRNA	47782-1_{1..101}	ENST00000516206 ncrna:snRNA chromosome:GRCh37:2:141924826:141924926:-1 gene:ENSG00000252015 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516206 ncrna:snRNA chromosome:GRCh37:2:141924826:141924926:-1 gene:ENSG00000252015 gene_biotype:snRNA transcript_biotype:snRNA	chr2	141924826	141924926	-	ENSG00000252015	ENST00000516206	NA	NA	LRP1B	NA	chr2:141914826-141934926	inner
CUST_21306_PI429285431	0.9009991	A	0.9215591	A	0.985849960307262	0	lncRNA	22929-1_{1..814}	lnc-NAPB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NAPB-2:1	chr20	 23331967	 23332780	-	lnc-NAPB-2	lnc-NAPB-2:1	ENSG00000234832.1	RP3-322G13.7	NXT1	NA	chr20:23331373-23335408	inner
CUST_40926_PI429285431	7.019344	P	5.941375	P	2.11106207321013	0	lncRNA	41610-1_{1..2303}	n410808|NR_038262|lncRNA|Homosapiens||RefGeneNoncode|NR_038262||-0.9623350|-0.1542548	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410808|NR_038262|lncRNA|Homosapiens||RefGeneNoncode|NR_038262||-0.9623350|-0.1542548	chr11	   565656	   567958	-	NA	NA	NA	NA	C11orf35	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70chr11:555656-560779"	NA	inter
CUST_28905_PI429285431	0.8961501	A	0.8965424	A	0.999728115328404	0	lncRNA	30622-1_{1..1815}	n326329|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000084227|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000084227|-0.2948770|-0.2969495	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326329|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000084227|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000084227|-0.2948770|-0.2969495	chr1	171653554	171655368	-	NA	NA	NA	NA	VAMP4	NA	chr1:171669296-171707124	inter
CUST_11213_PI429285431	5.0371323	P	5.3830686	P	0.786797184416763	0	lncRNA	12770-1_{1..425}	lnc-C3orf38-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C3orf38-2:2	chr3	 88431735	 88432159	+	lnc-C3orf38-2	lnc-C3orf38-2:2	XLOC_002727	linc-EPHA3	NA	NA	NA	inter
CUST_28583_PI429285431	3.0540395	P	1.2747319	A	3.43261391842651	0	lncRNA	30263-1_{1..1860}	n325944|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048824|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048824|6.1533900|-0.1539242	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325944|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048824|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048824|6.1533900|-0.1539242	chr10	 76726153	 76728012	+	NA	NA	NA	NA	DUPD1	NA	chr10:76797594-76801442	inner
CUST_27671_PI429285431	1.5127555	A	1.2234014	A	1.22209301955173	0	lncRNA	29249-1_{1..480}	n324878|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170921|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170921|-1.0850400|-0.3267121	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324878|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170921|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170921|-1.0850400|-0.3267121	chr21	 21949229	 21949708	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46185_PI429285431	1.5894868	A	1.7182841	A	0.914593581725056	0	lncRNA	50431-1_{1..1129}	"gi|378548195|ref|NR_046378.1| Homo sapiens MTUS2 antisense RNA 1 (MTUS2-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|378548195|ref|NR_046378.1| Homo sapiens MTUS2 antisense RNA 1 (MTUS2-AS1), non-coding RNA"	Chr13	 30050652	 30051780	-	100874107	NR_046378.1	NA	NA	NA	NA	NA	inter
CUST_15702_PI429285431	5.2670164	P	5.075495	P	1.14196734748131	0	lncRNA	17390-1_{1..222}	lnc-ALG10B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALG10B-2:1	chr12	 39317620	 39317841	+	lnc-ALG10B-2	lnc-ALG10B-2:1	XLOC_009709	linc-C12orf40-3	NA	NA	NA	inter
CUST_43040_PI429285431	1.221392	A	0.9047983	A	1.24538663329544	0	lncRNA	46639-1_{1..64}	ENST00000459535 ncrna:snRNA chromosome:GRCh37:2:98529517:98529580:-1 gene:ENSG00000238719 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459535 ncrna:snRNA chromosome:GRCh37:2:98529517:98529580:-1 gene:ENSG00000238719 gene_biotype:snRNA transcript_biotype:snRNA	chr2	 98529517	 98529580	-	ENSG00000238719	ENST00000459535	NA	NA	TMEM131	NA	chr2:98519517-98539580	inner
CUST_38935_PI429285431	3.9307914	P	3.335178	P	1.51111493952795	0	lncRNA	39923-2_{3001..4481}	n385070|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003slj.1||7.0000400|-0.0957343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385070|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003slj.1||7.0000400|-0.0957343	chr7	  1887935	  1889415	+	NA	NA	NA	NA	MAD1L1	NA	chr7:1874935-1899567	inner
LNCA_21_P0009294	2.8302662	A	3.0397294	A	0.86485896938955	0	lncRNA	TCONS_00025553	NA	NA	NA	NA	XLOC_012379	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012379), lincRNA [TCONS_00025553]"	chr17:7607358-7607299	hs|17p13.1	Agilent_HUMAN_G3V2	TCONS_00025553	TCONS_00025553	chr17	  7607299	  7607358	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42479_PI429285431	6.096919	P	6.4702487	P	0.771998687588046	0	lncRNA	45237-1_{1..104}	ENST00000362566 ncrna:snoRNA chromosome:GRCh37:14:21860309:21860412:-1 gene:ENSG00000199436 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362566 ncrna:snoRNA chromosome:GRCh37:14:21860309:21860412:-1 gene:ENSG00000199436 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 21860309	 21860412	-	ENSG00000199436	ENST00000362566	NA	NA	CHD8	NA	chr14:21853353-21870412	inner
CUST_15036_PI429285431	0.8973058	A	0.91037786	A	0.990980064371489	0	lncRNA	16699-1_{1..639}	lnc-LPHN3-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LPHN3-6:2	chr4	 64651291	 64651929	+	lnc-LPHN3-6	lnc-LPHN3-6:2	XLOC_003557	linc-STAP1-7	NA	NA	NA	inter
CUST_23250_PI429285431	4.771743	P	4.5070076	P	1.20141568158066	0	lncRNA	24822-1_{1..502}	lnc-HDDC3-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HDDC3-4:2	chr15	 91260208	 91260709	-	lnc-HDDC3-4	lnc-HDDC3-4:2	ENSG00000259736.1	RP11-387D10.2	BLM	NA	chr15:91260579-91270280	inter
CUST_9325_PI429285431	3.6093369	P	3.861321	P	0.839740747709656	0	lncRNA	10833-1_{1..400}	lnc-ITGA6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITGA6-2:1	chr2	173145465	173145864	+	lnc-ITGA6-2	lnc-ITGA6-2:1	XLOC_001756	linc-ITGA6-2	NA	NA	NA	inter
CUST_33143_PI429285431	1.5550349	A	2.008048	A	0.730515555994868	0	lncRNA	34739-1_{1..1766}	n339832|AX748072|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2279|NULL|0.1751940|-0.2359983	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339832|AX748072|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2279|NULL|0.1751940|-0.2359983	chr18	 33552113	 33553878	-	NA	NA	NA	NA	C18orf21	"hg19_refFlat_C18orf21:range=chr18:33552692-335589695'pad=0,hg19_refFlat_C18orf21:range=chr18:33552692-335589695'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_C18orf21:range=chr18:33552692-335588905'pad=0,hg19_refFlat_C18orf21:range=chr18:33552692-335588905'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80chr18:33552588-33559250"	NA	inner
CUST_11517_PI429285431	0.8987964	A	0.9020647	A	0.997737151181026	0	lncRNA	13087-1_{1..347}	lnc-VWC2L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VWC2L-1:1	chr2	215698713	215699059	+	lnc-VWC2L-1	lnc-VWC2L-1:1	XLOC_001836	linc-ATIC-3	NA	NA	NA	inter
CUST_12669_PI429285431	7.0336375	P	7.2348266	P	0.869833332587352	0	lncRNA	14286-1_{1..1480}	lnc-USP14-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-USP14-5:3	chr18	    15617	    17096	+	lnc-USP14-5	lnc-USP14-5:3	XLOC_012598	linc-USP14-3	LOC100652790	NA	chr18:11264-12387	inter
CUST_51419_PI429285431	5.1402597	P	4.858756	P	1.21546108176941	0	lncRNA	54998-1_{1..339}	hg19_lincRNAsTranscripts_TCONS_l2_00009584 range=chr16:8976563-8979014 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009584 range=chr16:8976563-8979014 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	  8976563	  8976901	+	NA	NA	NA	NA	USP7	NA	chr16:8985951-8989014	inter
LNCA_21_P0002560	1.4522028	A	1.3024354	A	1.1093905950024	0	lncRNA	TCONS_00004652	NA	NA	NA	NA	XLOC_002560	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002560), lincRNA [TCONS_00004652]"	chr2:243000219-243000160	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_00004652	TCONS_00004652	chr2	243000160	243000219	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50404_PI429285431	2.5522041	A	2.5013814	A	1.03585545428635	0	lncRNA	54108-1_{1..563}	hg19_lincRNAsTranscripts_TCONS_l2_00030124 range=chrX:2527516-2544744 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030124 range=chrX:2527516-2544744 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	  2527516	  2528078	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37282_PI429285431	6.0869603	P	5.6473446	P	1.3562430081129	0	lncRNA	38391-1_{1..736}	n345724|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1273|NULL|-1.2963100|-0.1199348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345724|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1273|NULL|-1.2963100|-0.1199348	chr22	 37593261	 37593996	-	NA	NA	NA	NA	SSTR3	NA	chr22:37602245-37605404	inter
CUST_47047_PI429285431	1.4835888	A	0.91255236	A	1.48559044365118	0	lncRNA	51136-1_{1..3000}	"gi|239835758|ref|NR_027300.2| Homo sapiens complement component 3 precursor pseudogene (C3P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239835758|ref|NR_027300.2| Homo sapiens complement component 3 precursor pseudogene (C3P1), non-coding RNA"	Chr19	 10152032	 10155031	+	388503	NR_027300.2	NA	NA	NA	NA	NA	inter
CUST_27737_PI429285431	0.924285	A	0.9203727	A	1.0027154799693	0	lncRNA	29319-1_{1..539}	n324953|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000258384|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000258384|-1.1019500|-0.3582583	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324953|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000258384|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000258384|-1.1019500|-0.3582583	chr20	 48703145	 48703683	+	NA	NA	NA	NA	TMEM189-UBE2V1	NA	chr20:48697661-48722219	inner
CUST_16926_PI429285431	2.727907	A	0.91457695	A	3.51452581040108	0	lncRNA	18638-1_{1..1438}	lnc-CLVS1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CLVS1-3:1	chr8	 62774329	 62775766	+	lnc-CLVS1-3	lnc-CLVS1-3:1	XLOC_006817	linc-NKAIN3-1	NA	NA	NA	inter
CUST_37039_PI429285431	4.0193834	P	4.0146728	P	1.00327047548187	0	lncRNA	38177-1_{1..2841}	n345494|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1043|NULL|-1.3358300|-0.2445815	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345494|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1043|NULL|-1.3358300|-0.2445815	chr2	 86126982	 86129822	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
CUST_33715_PI429285431	5.6737003	P	5.9224687	P	0.841614578259422	0	lncRNA	35275-1_{1..3000}	n340494|AK098506|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2955|NULL|-0.1604780|-0.1467499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n340494|AK098506|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2955|NULL|-0.1604780|-0.1467499	chr17	  6919140	  6922139	-	NA	NA	NA	NA	BCL6B	"hg19_refFlat_C17orf49:range=chr17:6918177-69205845'pad=0,hg19_refFlat_C17orf49:range=chr17:6918177-69205845'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.80;hg19_refFlat_C17orf49:range=chr17:6918177-69206405'pad=0,hg19_refFlat_C17orf49:range=chr17:6918177-69206405'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.80chr17:6926369-6932961"	NA	inter
CUST_36440_PI429285431	0.88466215	A	0.8880841	A	0.997630895773114	0	lncRNA	37654-1_{1..1423}	n344954|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_503|NULL|-1.3994000|-0.2570797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344954|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_503|NULL|-1.3994000|-0.2570797	chr7	 36773608	 36775030	+	NA	NA	NA	NA	AOAH	NA	chr7:36763608-36764154	inter
CUST_38812_PI429285431	3.9563227	P	4.198981	P	0.845186541781123	0	lncRNA	39805-1_{1..1494}	n384577|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jci.1||-1.1185200|-0.1907158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n384577|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jci.1||-1.1185200|-0.1907158	chr5	  1363696	  1365189	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24612_PI429285431	1.0142765	A	1.5247099	A	0.702011514918094	0	lncRNA	26161-1_{1..395}	lnc-AC092295.7.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC092295.7.1-1:2	chr19	 37038460	 37038854	+	lnc-AC092295.7.1-1	lnc-AC092295.7.1-1:2	ENSG00000239208.1	AC092295.5	ZNF529	"hg19_refFlat_ZNF529:range=chr19:37037768-370470595'pad=0,hg19_refFlat_ZNF529:range=chr19:37037768-370470595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF529:range=chr19:37037768-370632485'pad=0,hg19_refFlat_ZNF529:range=chr19:37037768-370632485'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF880:range=chr19:52873219-528885675'pad=0,hg19_refFlat_ZNF880:range=chr19:52873219-528885675'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.30;hg19_refFlat_ZNF841:range=chr19:52568360-525880545'pad=0,hg19_refFlat_ZNF841:range=chr19:52568360-525880545'pad=0 3'pad=0 strand=- repeatMasking=none,-55.00chr19:37034517-37048666"	NA	inner
CUST_19713_PI429285431	0.9024459	A	0.9171728	A	0.989844014663602	0	lncRNA	21370-1_{1..590}	lnc-JPH1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JPH1-5:1	chr8	 75941614	 75942203	-	lnc-JPH1-5	lnc-JPH1-5:1	ENSG00000254238.1	RP11-300E4.2	CRISPLD1	"hg19_refFlat_CRISPLD1:range=chr8:75898223-759444775'pad=0,hg19_refFlat_CRISPLD1:range=chr8:75898223-759444775'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20chr8:75931614-75946793"	NA	inner
LNCA_21_P0011882	2.5352902	A	3.577335	P	0.485638667002205	0	lncRNA	ENST00000477506	XM_001721240	XM_001721240	NA	Hs.361778	HEATR7B1	HEAT repeat containing 7B1	ENST00000477506	NA	GO:0005488	"BROAD Institute lincRNA (XLOC_l2_007808), lincRNA [TCONS_l2_00014299]"	chr2:234707437-234707496	hs|2q37.1	Agilent_HUMAN_G3V2	ENST00000477506	ENST00000477506	chr2	234707437	234707496	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25168_PI429285431	3.243692	P	3.3359475	P	0.938055053079183	0	lncRNA	26703-2_{3001..6000}	lnc-ZNF862-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:2	chr7	149533900	149536899	+	lnc-ZNF862-1	lnc-ZNF862-1:2	ENSG00000197558.7	SSPO	ZNF862	NA	chr7:149535509-149541054	inner
CUST_16155_PI429285431	0.8868334	A	0.8948822	A	0.994436530709483	0	lncRNA	17861-1_{1..344}	lnc-IFT20-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IFT20-2:1	chr17	 26577604	 26577947	-	lnc-IFT20-2	lnc-IFT20-2:1	XLOC_012428	linc-C17orf108-5	NA	NA	NA	inter
CUST_2266_PI429285431	0.9050689	A	1.8854109	A	0.506859571379492	0	lncRNA	2258-1_{1..625}	"transcript_id ""ENST00000515153.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000515153.1"" | genecode_v17"	chr5	 92355369	 92355993	-	ENSG00000251361.1	ENST00000515153.1	CTD-2091N23.1	CTD-2091N23.1-001	NA	NA	NA	inter
CUST_24259_PI429285431	5.032212	P	5.029841	P	1.0016448031724	0	lncRNA	25810-1_{1..1151}	lnc-ANKRD34B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD34B-2:2	chr5	 79783592	 79784742	-	lnc-ANKRD34B-2	lnc-ANKRD34B-2:2	ENSG00000249042.1	CTD-2015H6.3	FAM151B	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.50chr5:79783800-79793772"	NA	inter
CUST_31900_PI429285431	0.8827736	A	0.8861943	A	0.997631760154791	0	lncRNA	33631-1_{1..696}	n338455|AX721190|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|852|NULL|-1.0779500|-0.2433605	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338455|AX721190|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|852|NULL|-1.0779500|-0.2433605	chr14	 92511122	 92511817	-	NA	NA	NA	NA	ATXN3	NA	chr14:92524896-92526988	inter
CUST_33145_PI429285431	7.3821435	P	7.6314473	P	0.841302303779103	0	lncRNA	34741-1_{1..1590}	n339834|BC032036|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2281|NULL|-1.2999900|-0.1924770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339834|BC032036|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2281|NULL|-1.2999900|-0.1924770	chr4	  6909870	  6911459	-	NA	NA	NA	NA	TBC1D14	NA	chr4:6911171-6921439	inner
LNCA_33_P3789693	2.4484346	A	3.5300817	P	0.472489082693507	0	lncRNA	XR_108934	XR_108934	XR_108934	   158295	Hs.664877	MGC24103	uncharacterized MGC24103	NA	NP1159657	NA	"PREDICTED: Homo sapiens hypothetical MGC24103 (MGC24103), miscRNA [XR_108934]"	chr9:16526545-16526486	hs|9p22.3	Agilent_HUMAN_G3V2	XR_108934	XR_108934	chr9	 16526486	 16526545	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34744_PI429285431	0.8926059	A	0.8879551	A	1.00322889058046	0	lncRNA	36187-1_{1..2210}	n341649|BC040616|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4120|NULL|-1.1516500|-0.3484704	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341649|BC040616|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4120|NULL|-1.1516500|-0.3484704	chr9	  4299389	  4301598	+	NA	NA	NA	NA	GLIS3	NA	chr9:4289389-4300035	inner
CUST_84_PI429285431	4.299045	P	4.3427587	P	0.970154416480178	0	lncRNA	78-1_{1..1101}	"transcript_id ""ENST00000317008.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000317008.4"" | genecode_v17"	chr18	 77398928	 77400028	-	ENSG00000178412.4	ENST00000317008.4	RP11-567M16.3	RP11-567M16.3-001	CTDP1	NA	chr18:77439801-77449745	inter
CUST_41476_PI429285431	8.870513	P	9.094383	P	0.856265438406948	0	lncRNA	42674-1_{1..87}	ENST00000581999 ncrna:miRNA chromosome:GRCh37:17:72744752:72744838:1 gene:ENSG00000264624 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581999 ncrna:miRNA chromosome:GRCh37:17:72744752:72744838:1 gene:ENSG00000264624 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 72744752	 72744838	+	ENSG00000264624	ENST00000581999	NA	NA	SLC9A3R1	NA	chr17:72744763-72754838	inner
CUST_51063_PI429285431	1.3619785	A	2.3622775	A	0.49989638523401	0	lncRNA	54701-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00006759 range=chr13:25588663-25596910 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006759 range=chr13:25588663-25596910 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 25588663	 25591662	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-56.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ANKRD36:range=chr2:97779477-979159045'pad=0,hg19_refFlat_ANKRD36:range=chr2:97779477-979159045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ANKRD36B:range=chr2:98123505-982061485'pad=0,hg19_refFlat_ANKRD36B:range=chr2:98123505-982061485'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-55.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70"	NA	inter
CUST_26506_PI429285431	4.082755	P	4.471283	P	0.763908632627709	0	lncRNA	28014-1_{1..436}	lnc-BHLHE41-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BHLHE41-1:2	chr12	 26278916	 26279351	-	lnc-BHLHE41-1	lnc-BHLHE41-1:2	ENSG00000256894.1	RP11-283G6.3	BHLHE41	NA	chr12:26272959-26278003	inter
CUST_43774_PI429285431	1.8997338	A	1.4756253	A	1.34174312885105	0	lncRNA	48506-5_{12001..14761}	"gi|410170795|ref|XR_171117.1| PREDICTED: Homo sapiens hydrocephalus-inducing protein homolog (LOC100996292), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170795|ref|XR_171117.1| PREDICTED: Homo sapiens hydrocephalus-inducing protein homolog (LOC100996292), misc_RNA"	NA	NA	NA	NA	NA	XR_171117.1	NA	NA	NA	NA	NA	Unknown
CUST_25118_PI429285431	4.4063635	P	4.6107435	P	0.867911593111647	0	lncRNA	26656-1_{1..464}	lnc-C15orf41-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C15orf41-5:1	chr15	 37392002	 37392465	+	lnc-C15orf41-5	lnc-C15orf41-5:1	ENSG00000259460.1	RP11-128A17.1	MEIS2	NA	chr15:37382002-37393500	inner
CUST_23753_PI429285431	0.8919908	A	0.8872957	A	1.0032596966212	0	lncRNA	25316-1_{1..747}	lnc-ALDH7A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALDH7A1-1:2	chr5	125825971	125826717	-	lnc-ALDH7A1-1	lnc-ALDH7A1-1:2	ENSG00000250602.1	RP11-517I3.1	GRAMD3	NA	chr5:125815971-125829853	inner
CUST_459_PI429285431	0.89705265	A	1.1833014	A	0.82003150887783	0	lncRNA	451-1_{1..675}	"transcript_id ""ENST00000452465.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452465.1"" | genecode_v17"	chr1	156422689	156423363	-	ENSG00000236947.1	ENST00000452465.1	RP11-98G7.1	RP11-98G7.1-002	MEF2D	NA	chr1:156433519-156436369	inter
CUST_41554_PI429285431	1.647463	A	0.9309871	A	1.64316334034087	0	lncRNA	42850-1_{1..86}	ENST00000362199 ncrna:miRNA chromosome:GRCh37:14:101492069:101492154:1 gene:ENSG00000199069 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362199 ncrna:miRNA chromosome:GRCh37:14:101492069:101492154:1 gene:ENSG00000199069 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101492069	101492154	+	ENSG00000199069	ENST00000362199	NA	NA	NA	NA	NA	inter
CUST_23447_PI429285431	0.88851655	A	0.8932307	A	0.996737733012868	0	lncRNA	25014-1_{1..701}	lnc-AC005838.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC005838.1-2:1	chr17	 15443380	 15444080	-	lnc-AC005838.1-2	lnc-AC005838.1-2:1	ENSG00000263822.1	RP11-385D13.2	FAM18B2	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30chr17:15433380-15453485"	NA	inner
CUST_48613_PI429285431	0.90949965	A	1.3009272	A	0.762374859486318	0	lncRNA	52460-1_{1..659}	hg19_lincRNAsTranscripts_TCONS_l2_00014613 range=chr2:64557656-64560084 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014613 range=chr2:64557656-64560084 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 64557656	 64558314	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16472_PI429285431	0.88129413	A	0.88125384	A	1.00002792728986	0	lncRNA	18170-1_{1..304}	lnc-DAAM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DAAM2-1:1	chr6	 39920787	 39921090	+	lnc-DAAM2-1	lnc-DAAM2-1:1	XLOC_005283	linc-TSPO2-4	NA	NA	NA	inter
CUST_9024_PI429285431	6.119215	P	6.129052	P	0.993204704335674	0	lncRNA	10551-1_{1..2124}	lnc-FANCI-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-FANCI-2:5	chr15	 89941262	 89943385	+	lnc-FANCI-2	lnc-FANCI-2:5	ENSG00000255571	AC133637.1	NA	NA	NA	inter
CUST_14036_PI429285431	4.5064464	P	5.089079	P	0.667744179248457	0	lncRNA	15682-1_{1..780}	lnc-MAP3K2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP3K2-1:1	chr2	128169668	128170447	-	lnc-MAP3K2-1	lnc-MAP3K2-1:1	XLOC_002309	linc-MAP3K2-2	PROC	NA	chr2:128175996-128179824	inter
CUST_28090_PI429285431	5.846797	P	6.0899496	P	0.84489701132997	0	lncRNA	29711-1_{1..407}	n325361|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324732|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324732|-0.6973980|-0.3001374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325361|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324732|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324732|-0.6973980|-0.3001374	chr2	 27126054	 27126460	-	NA	NA	NA	NA	DPYSL5	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20chr2:27116054-27136636"	NA	inner
CUST_21305_PI429285431	12.556968	P	12.410587	P	1.10678960554426	0	lncRNA	22928-3_{6001..8108}	lnc-TRIOBP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIOBP-1:1	chr22	 38175790	 38177897	+	lnc-TRIOBP-1	lnc-TRIOBP-1:1	ENSG00000100101.12	RP1-37E16.12	TRIOBP	NA	chr22:38159790-38172563	inner
LNCA_21_P0012117	0.889877	A	0.88851416	A	1.00094509502467	0	lncRNA	TCONS_l2_00016541	NA	NA	NA	NA	XLOC_l2_008599	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008815), lincRNA [TCONS_l2_00016541]"	chr20:25785395-25785336	hs|20p11.1	Agilent_HUMAN_G3V2	TCONS_l2_00016541	TCONS_l2_00016541	chr20	 25785336	 25785395	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49080_PI429285431	7.656103	P	7.0710454	P	1.50009887995444	0	lncRNA	52904-1_{1..1606}	hg19_lincRNAsTranscripts_TCONS_l2_00021051 range=chr4:9146452-9154859 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021051 range=chr4:9146452-9154859 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  9146452	  9148057	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6658_PI429285431	2.413293	A	3.4471817	P	0.488391941138186	0	lncRNA	6604-1_{1..1220}	"transcript_id ""ENST00000455890.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455890.2"" | genecode_v17"	chr20	 21073450	 21074669	-	ENSG00000225127.2	ENST00000455890.2	LINC00237	LINC00237-003	NA	NA	NA	inter
CUST_8665_PI429285431	0.9234487	A	0.9276128	A	0.997117827283165	0	lncRNA	10216-1_{1..990}	lnc-CAMK1G-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CAMK1G-1:1	chr1	209605549	209606538	+	lnc-CAMK1G-1	lnc-CAMK1G-1:1	ENSG00000230937	CTA-55I10.1	LOC642587	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90chr1:209602168-209605894"	NA	inter
CUST_10574_PI429285431	0.89022416	A	0.8854208	A	1.00333498416773	0	lncRNA	12106-1_{1..655}	lnc-TMEM196-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TMEM196-1:1	chr7	 19871002	 19871656	-	lnc-TMEM196-1	lnc-TMEM196-1:1	XLOC_006365	linc-TMEM196-1	NA	NA	NA	inter
CUST_3484_PI429285431	1.0253799	A	0.9152346	A	1.07933693567867	0	lncRNA	3455-1_{1..410}	"transcript_id ""ENST00000366188.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000366188.2"" | genecode_v17"	chr9	 95909322	 95909731	+	ENSG00000203364.2	ENST00000366188.2	RP11-370F5.4	RP11-370F5.4-001	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70"	NA	inter
CUST_21143_PI429285431	0.8994613	A	0.91063285	A	0.992286375493979	0	lncRNA	22768-1_{1..820}	lnc-CLIC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLIC4-1:1	chr1	 25289466	 25290285	+	lnc-CLIC4-1	lnc-CLIC4-1:1	ENSG00000229162.1	RP11-84D1.1	RUNX3	NA	chr1:25279466-25291501	inner
CUST_23328_PI429285431	1.966597	A	1.5313255	A	1.35216527233776	0	lncRNA	24899-1_{1..511}	lnc-CDK5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK5-1:1	chr7	150726676	150727186	-	lnc-CDK5-1	lnc-CDK5-1:1	ENSG00000243433.1	RP11-148K1.10	ABCB8	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.70chr7:150725510-150736841"	NA	inner
CUST_46934_PI429285431	10.063244	P	10.449089	P	0.765330605940944	0	lncRNA	51043-2_{3001..4828}	"gi|254750689|ref|NR_028133.1| Homo sapiens exocyst complex component 7 (EXOC7), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254750689|ref|NR_028133.1| Homo sapiens exocyst complex component 7 (EXOC7), transcript variant 3, non-coding RNA"	Chr17	 74080086	 74081913	-	23265	NR_028133.1	NA	NA	NA	"hg19_refFlat_ZACN:range=chr17:74075346-740787345'pad=0,hg19_refFlat_ZACN:range=chr17:74075346-740787345'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.40"	NA	inter
CUST_38519_PI429285431	0.8980552	A	0.9094058	A	0.992163232455507	0	lncRNA	39530-1_{1..881}	n383155|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002hml.1||-0.9277040|-0.2395732	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383155|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002hml.1||-0.9277040|-0.2395732	chr17	 34794165	 34795045	-	NA	NA	NA	NA	TBC1D3G	NA	chr17:34797174-34805046	inter
CUST_26618_PI429285431	0.88988316	A	1.0525231	A	0.893388791658557	0	lncRNA	28121-1_{1..655}	lnc-MAGEA9B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MAGEA9B-1:1	chrX	148607261	148607915	-	lnc-MAGEA9B-1	lnc-MAGEA9B-1:1	ENSG00000238039.1	AF011889.2	NA	"hg19_refFlat_IDS:range=chrX:148564277-1485866675'pad=0,hg19_refFlat_IDS:range=chrX:148564277-1485866675'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_IDS:range=chrX:148564277-1485857005'pad=0,hg19_refFlat_IDS:range=chrX:148564277-1485857005'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_IDS:range=chrX:148568819-1485866675'pad=0,hg19_refFlat_IDS:range=chrX:148568819-1485866675'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60"	NA	inter
CUST_1631_PI429285431	1.268302	A	1.947538	A	0.624495897723989	0	lncRNA	1616-1_{1..793}	"transcript_id ""ENST00000451982.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451982.2"" | genecode_v17"	chr3	195408150	195408942	+	ENSG00000242086.3	ENST00000451982.2	AC069513.3	AC069513.3-034	NA	NA	NA	inter
CUST_1837_PI429285431	0.8976919	A	0.8993733	A	0.998835221212634	0	lncRNA	1826-1_{1..206}	"transcript_id ""ENST00000507153.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507153.1"" | genecode_v17"	chr4	107279555	107279760	-	ENSG00000250298.1	ENST00000507153.1	GIMD1	GIMD1-001	AIMP1	NA	chr4:107269555-107270382	inner
CUST_31294_PI429285431	3.72123	P	0.8964436	A	7.08509108323013	0	lncRNA	33080-1_{1..2397}	n337754|AK056217|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|136|NULL|-0.0784737|-0.2619791	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337754|AK056217|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|136|NULL|-0.0784737|-0.2619791	chrX	 71370733	 71373129	+	NA	NA	NA	NA	NHSL2	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70chrX:71360733-71363424"	NA	inner
CUST_9664_PI429285431	6.076207	P	6.1614294	P	0.942639211290142	0	lncRNA	11181-1_{1..333}	lnc-CENPP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CENPP-2:1	chr9	 94972336	 94972668	+	lnc-CENPP-2	lnc-CENPP-2:1	XLOC_007460	linc-CENPP-2	IARS	NA	chr9:94972625-94982440	inter
CUST_32091_PI429285431	1.9590341	A	1.1681302	A	1.73015812900005	0	lncRNA	33797-1_{1..1721}	n338654|AK123333|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1068|NULL|-0.9606880|-0.3307942	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n338654|AK123333|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1068|NULL|-0.9606880|-0.3307942	chr19	 42041544	 42043264	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009564	0.893613	A	0.89257514	A	1.00071964855567	0	lncRNA	TCONS_00026536	NA	NA	NA	NA	XLOC_012859	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012859), lincRNA [TCONS_00026536]"	chr18:57837911-57837852	hs|18q21.32	Agilent_HUMAN_G3V2	TCONS_00026536	TCONS_00026536	chr18	 57837852	 57837911	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8400_PI429285431	0.8976029	A	0.9075883	A	0.993102545533132	0	lncRNA	9977-2_{3001..5249}	lnc-AUH-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AUH-3:1	chr9	 93838808	 93841056	-	lnc-AUH-3	lnc-AUH-3:1	ENSG00000249954	XLOC_007774	NA	NA	NA	inter
LNCA_21_P0002189	7.5241723	P	8.163651	P	0.641944865712075	0	lncRNA	TCONS_00003617	NA	NA	NA	NA	XLOC_001406	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001406), lincRNA [TCONS_00003617]"	chr2:27980408-27980467	hs|2p23.2	Agilent_HUMAN_G3V2	TCONS_00003617	TCONS_00003617	chr2	 27980408	 27980467	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26734_PI429285431	3.7270033	P	4.5206795	P	0.576872261821712	0	lncRNA	28229-1_{1..598}	n5293|U85256|telomeraseRNA|Homosapiens|telomeraseRNA|NONCODEv2.0|n5293|NULL|-1.5906100|-0.0705824	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n5293|U85256|telomeraseRNA|Homosapiens|telomeraseRNA|NONCODEv2.0|n5293|NULL|-1.5906100|-0.0705824	chr3	169482250	169482847	-	NA	NA	NA	NA	MYNN	NA	chr3:169490853-169492848	inter
CUST_1132_PI429285431	1.0539682	A	0.8994017	A	1.11308710833632	0	lncRNA	1121-1_{1..564}	"transcript_id ""ENST00000429317.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429317.1"" | genecode_v17"	chr2	151091406	151091969	-	ENSG00000231420.1	ENST00000429317.1	AC113610.1	AC113610.1-001	NA	NA	NA	inter
CUST_11957_PI429285431	0.8916925	A	1.7771626	A	0.541311108615246	0	lncRNA	13536-2_{3001..3825}	lnc-AL137145.1-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AL137145.1-2:7	chr10	  6630760	  6631584	+	lnc-AL137145.1-2	lnc-AL137145.1-2:7	XLOC_008370	linc-ITIH2-10	NA	NA	NA	inter
CUST_32360_PI429285431	1.0570256	A	0.9185991	A	1.10070395938195	0	lncRNA	34038-1_{1..744}	n338943|BC032913|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1371|NULL|1.1593100|-0.2263067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n338943|BC032913|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1371|NULL|1.1593100|-0.2263067	chr2	115901624	115902367	-	NA	NA	NA	NA	DPP10	NA	chr2:115891624-115928920	inner
CUST_45315_PI429285431	3.569747	P	3.040654	A	1.44302170492114	0	lncRNA	49757-1_{1..1067}	"gi|383792206|ref|NR_047541.1| Homo sapiens CDKN2B antisense RNA 1 (CDKN2B-AS1), transcript variant 11, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|383792206|ref|NR_047541.1| Homo sapiens CDKN2B antisense RNA 1 (CDKN2B-AS1), transcript variant 11, non-coding RNA"	Chr9	 21994790	 21995856	+	100048912	NR_047541.1	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00"	NA	inter
LNCA_21_P0002509	0.90658486	A	0.9261653	A	0.98651955927226	0	lncRNA	TCONS_00004462	NA	NA	NA	NA	XLOC_002338	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002338), lincRNA [TCONS_00004462]"	chr2:139667599-139667540	hs|2q22.1	Agilent_HUMAN_G3V2	TCONS_00004462	TCONS_00004462	chr2	139667540	139667599	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27248_PI429285431	0.8934866	A	1.0170141	A	0.917940469644088	0	lncRNA	28798-1_{1..1831}	n324391|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316061|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316061|-1.1402400|-0.3210362	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324391|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316061|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316061|-1.1402400|-0.3210362	chr6	132494747	132496577	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010101	5.072765	P	5.0238743	P	1.03446920614214	0	lncRNA	TCONS_00028590	NA	NA	NA	NA	XLOC_013614	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013614), lincRNA [TCONS_00028590]"	chr20:62133516-62133575	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028590	TCONS_00028590	chr20	 62133516	 62133575	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20771_PI429285431	7.110437	P	7.49561	P	0.76568717607592	0	lncRNA	22404-1_{1..418}	lnc-ACTR6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACTR6-1:1	chr12	100538318	100538735	+	lnc-ACTR6-1	lnc-ACTR6-1:1	ENSG00000257696.1	RP11-175P13.2	UHRF1BP1L	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00chr12:100528318-100536642"	NA	inter
CUST_12499_PI429285431	1.1228534	A	1.4962193	A	0.771979316895635	0	lncRNA	14111-1_{1..562}	lnc-GRAMD3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRAMD3-1:3	chr5	125529293	125529854	+	lnc-GRAMD3-1	lnc-GRAMD3-1:3	XLOC_004539	linc-GRAMD3-1	NA	NA	NA	inter
CUST_2735_PI429285431	1.3025324	A	1.2009377	A	1.07295881499048	0	lncRNA	2720-1_{1..505}	"transcript_id ""ENST00000480919.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000480919.1"" | genecode_v17"	chr7	   144444	   144948	-	ENSG00000242474.1	ENST00000480919.1	AC093627.9	AC093627.9-002	NA	NA	NA	inter
CUST_24334_PI429285431	0.9083946	A	0.905331	A	1.00212578197987	0	lncRNA	25887-1_{1..940}	lnc-AC005008.2.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC005008.2.1-1:2	chr7	 81656971	 81657910	+	lnc-AC005008.2.1-1	lnc-AC005008.2.1-1:2	ENSG00000223770.1	MIR1255B1	CACNA2D1	NA	chr7:81646971-81667659	inner
CUST_3985_PI429285431	1.9875107	A	0.9852555	A	2.00312881586591	0	lncRNA	3946-1_{1..464}	"transcript_id ""ENST00000534505.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534505.1"" | genecode_v17"	chr11	 65513200	 65513663	+	ENSG00000255557.1	ENST00000534505.1	RP11-770G2.2	RP11-770G2.2-001	DKFZp761E198	NA	chr11:65543373-65547822	inter
CUST_38216_PI429285431	12.315457	P	12.475552	P	0.894966136378462	0	lncRNA	39281-2_{3001..3680}	n381587|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lsz.2||7.6901400|-0.0402094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381587|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lsz.2||7.6901400|-0.0402094	chr11	  1216089	  1216768	+	NA	NA	NA	NA	MUC5AC	NA	chr11:1203089-1222364	inter
CUST_47500_PI429285431	4.898174	P	3.8513248	P	2.06601281079746	0	lncRNA	51514-1_{1..492}	"gi|397139770|ref|XR_109706.2| PREDICTED: Homo sapiens uncharacterized LOC100506075 (LOC100506075), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139770|ref|XR_109706.2| PREDICTED: Homo sapiens uncharacterized LOC100506075 (LOC100506075), misc_RNA"	NA	NA	NA	NA	NA	XR_109706.2	NA	NA	NA	NA	NA	Unknown
CUST_43742_PI429285431	2.561635	A	3.2018523	A	0.641616300689694	0	lncRNA	48484-1_{1..594}	"gi|397138928|ref|XR_159118.1| PREDICTED: Homo sapiens chromosome 1 open reading frame 148 (C1orf148), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138928|ref|XR_159118.1| PREDICTED: Homo sapiens chromosome 1 open reading frame 148 (C1orf148), misc_RNA"	NA	NA	NA	NA	NA	XR_159118.1	NA	NA	NA	NA	NA	Unknown
CUST_25810_PI429285431	0.9197407	A	0.9298199	A	0.993037978879805	0	lncRNA	27331-1_{1..431}	lnc-RBM26-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-RBM26-2:1	chr13	 80055287	 80055717	-	lnc-RBM26-2	lnc-RBM26-2:1	ENSG00000232132.1	NDFIP2-AS1	NDFIP2	NA	chr13:80055259-80065366	inner
CUST_36227_PI429285431	0.8790788	A	0.92231804	A	0.970473524225874	0	lncRNA	37478-1_{1..3000}	n344769|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_318|NULL|-1.3497200|-0.3547986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344769|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_318|NULL|-1.3497200|-0.3547986	chr1	 95144980	 95147979	-	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80"	NA	inter
CUST_19723_PI429285431	0.8863281	A	0.8917445	A	0.996252676418189	0	lncRNA	21381-1_{1..768}	lnc-VGLL3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-VGLL3-5:1	chr3	 85877151	 85877918	-	lnc-VGLL3-5	lnc-VGLL3-5:1	ENSG00000241648.1	CADM2-AS2	CADM2	NA	chr3:85867151-85887200	inner
CUST_28874_PI429285431	0.8835716	A	0.9188339	A	0.97585432212716	0	lncRNA	30588-1_{1..506}	n326295|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097707|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097707|-1.0896700|-0.3728213	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326295|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097707|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097707|-1.0896700|-0.3728213	chr1	188716131	188716636	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37240_PI429285431	0.8836144	A	0.88637453	A	0.998088652627794	0	lncRNA	38347-2_{3001..3155}	n345670|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1219|NULL|-1.6520900|-0.4182810	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345670|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1219|NULL|-1.6520900|-0.4182810	chr5	 44829677	 44829831	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48645_PI429285431	2.2180643	A	3.2683918	A	0.482858540378499	0	lncRNA	52492-1_{1..1338}	hg19_lincRNAsTranscripts_TCONS_l2_00014690 range=chr2:91909643-91911547 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014690 range=chr2:91909643-91911547 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 91909643	 91910980	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38852_PI429285431	1.1824985	A	0.885159	A	1.22887612981486	0	lncRNA	39843-2_{3001..3380}	n384703|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kkd.2||-1.0099500|-0.3161333	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384703|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kkd.2||-1.0099500|-0.3161333	chr5	 92748064	 92748443	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7773_PI429285431	3.8170474	P	4.042091	P	0.855569168950318	0	lncRNA	9399-1_{1..284}	lnc-NBN-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NBN-1:8	chr8	 90635314	 90635597	-	lnc-NBN-1	lnc-NBN-1:8	ENSG00000251136	RP11-37B2.1	NA	NA	NA	inter
CUST_48146_PI429285431	0.9023644	A	2.6970248	A	0.288239428195738	0	lncRNA	52013-1_{1..2204}	"gi|397137661|ref|XR_111397.2| PREDICTED: Homo sapiens ANKRD10 intronic transcript 1 (non-protein coding) (ANKRD10-IT1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397137661|ref|XR_111397.2| PREDICTED: Homo sapiens ANKRD10 intronic transcript 1 (non-protein coding) (ANKRD10-IT1), misc_RNA"	NA	NA	NA	NA	NA	XR_111397.2	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-28.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40"	NA	Unknown
CUST_15853_PI429285431	9.086199	P	9.140169	P	0.96328192469639	0	lncRNA	17546-2_{3001..6000}	lnc-KLF7-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF7-1:7	chr2	208105812	208108811	-	lnc-KLF7-1	lnc-KLF7-1:7	XLOC_002473	linc-KLF7-2	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60"	NA	inter
CUST_29837_PI429285431	3.6643052	P	3.1031337	A	1.47546684239762	0	lncRNA	31600-1_{1..214}	n333718|K03512|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191429|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191429|0.9152950|-0.1641689	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333718|K03512|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191429|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191429|0.9152950|-0.1641689	chr11	 14989271	 14989484	-	NA	NA	NA	NA	CALCA	NA	chr11:14988215-14993832	inner
CUST_36031_PI429285431	3.0521448	P	3.5762703	P	0.695380492094904	0	lncRNA	37357-1_{1..2388}	n344638|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_186|NULL|-1.2844400|-0.2394254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344638|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_186|NULL|-1.2844400|-0.2394254	chr6	 40253525	 40255912	+	NA	NA	NA	NA	NA	"hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0,hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90"	NA	inter
LNCA_19_P00326248	7.0927544	P	7.068594	P	1.01688772540594	0	lncRNA	TCONS_00017433	NA	NA	NA	NA	XLOC_008015	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008015), lincRNA [TCONS_00017433]"	chrX:73071383-73071442	hs|Xq13.2	Agilent_HUMAN_G3V2	TCONS_00017433	TCONS_00017433	chrX	 73071383	 73071442	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27460_PI429285431	0.9144913	A	0.89973736	A	1.01027912283256	0	lncRNA	29030-1_{1..1344}	n324636|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000253838|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000253838|-0.9082860|-0.3517845	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324636|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000253838|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000253838|-0.9082860|-0.3517845	chr5	 43077433	 43078776	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38614_PI429285431	0.8835525	A	0.88778424	A	0.99707107903292	0	lncRNA	39618-1_{1..1739}	n383745|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tsq.1||-0.1000990|-0.1799792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383745|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tsq.1||-0.1000990|-0.1799792	chr2	132036862	132038600	+	NA	NA	NA	NA	WTH3DI	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50chr2:132054397-132067392"	NA	inter
CUST_27129_PI429285431	0.8925951	A	0.90236175	A	0.993253137062326	0	lncRNA	28664-1_{1..575}	n324244|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325955|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325955|-1.3930200|-0.4010165	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324244|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325955|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325955|-1.3930200|-0.4010165	chr7	 13107540	 13108114	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16669_PI429285431	5.1251974	P	4.884478	P	1.18158171036908	0	lncRNA	18373-1_{1..495}	lnc-PIPOX-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-PIPOX-1:4	chr17	 27343365	 27343859	+	lnc-PIPOX-1	lnc-PIPOX-1:4	XLOC_012160	linc-PIPOX-1	NA	NA	NA	inter
CUST_26034_PI429285431	2.9442153	A	1.3152943	A	3.09281598682645	0	lncRNA	27552-1_{1..3000}	lnc-SEC16B.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC16B.1-2:3	chr1	177991575	177994574	-	lnc-SEC16B.1-2	lnc-SEC16B.1-2:3	ENSG00000254154.3	SEC16B	NA	NA	NA	inter
CUST_36836_PI429285431	3.8164055	P	4.1094337	P	0.816187092189532	0	lncRNA	38001-1_{1..1543}	n345309|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_858|NULL|-1.6957000|-0.3307713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345309|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_858|NULL|-1.6957000|-0.3307713	chr15	 67794969	 67796511	+	NA	NA	NA	NA	IQCH	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-42.02;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60chr15:67784969-67794142"	NA	inter
CUST_20551_PI429285431	7.001778	P	7.149557	P	0.902638988101391	0	lncRNA	22192-1_{1..557}	lnc-KBTBD5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KBTBD5-1:1	chr3	 42745641	 42746197	+	lnc-KBTBD5-1	lnc-KBTBD5-1:1	ENSG00000230970.1	HHATL-AS1	CCDC13	NA	chr3:42749874-42756120	inter
CUST_16758_PI429285431	0.88653326	A	0.8864685	A	1.0000448892189	0	lncRNA	18466-1_{1..873}	lnc-NGLY1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NGLY1-1:7	chr3	 25913806	 25914678	-	lnc-NGLY1-1	lnc-NGLY1-1:7	XLOC_003069	linc-NGLY1-1	NA	NA	NA	inter
CUST_12814_PI429285431	3.7794268	P	4.194057	P	0.750211768651762	0	lncRNA	14443-1_{1..691}	lnc-CRYBA4-1:40	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:40	chr22	 27175847	 27176537	+	lnc-CRYBA4-1	lnc-CRYBA4-1:40	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
CUST_35718_PI429285431	5.8086524	P	5.80337	P	1.00366819207566	0	lncRNA	37137-1_{1..3000}	n342884|BC047234|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5390|NULL|-1.0405800|-0.3172943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342884|BC047234|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5390|NULL|-1.0405800|-0.3172943	chr12	  9520059	  9523058	+	NA	NA	NA	NA	LOC728715	NA	chr12:9549658-9555094	inter
CUST_44235_PI429285431	9.689869	P	9.777852	P	0.94083719380549	0	lncRNA	48884-1_{1..2784}	"gi|292494905|ref|NR_033426.1| Homo sapiens acyl-CoA dehydrogenase family, member 9 (ACAD9), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|292494905|ref|NR_033426.1| Homo sapiens acyl-CoA dehydrogenase family, member 9 (ACAD9), transcript variant 2, non-coding RNA"	Chr3	128598333	128601116	+	28976	NR_033426.1	NA	NA	NA	NA	NA	inter
CUST_29167_PI429285431	5.441345	P	5.662472	P	0.857895006871418	0	lncRNA	30910-1_{1..809}	n326678|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096539|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096539|-0.2521830|-0.2574745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326678|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096539|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096539|-0.2521830|-0.2574745	chr1	 22224267	 22225075	+	NA	NA	NA	NA	HSPG2	"hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.60;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90chr1:22214267-22239983"	NA	inner
CUST_17825_PI429285431	6.109396	P	6.419707	P	0.806467891188649	0	lncRNA	19560-1_{1..533}	lnc-EXOC2-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXOC2-8:1	chr6	  1063118	  1063650	-	lnc-EXOC2-8	lnc-EXOC2-8:1	XLOC_005572	linc-HUS1B-5	NA	NA	NA	inter
CUST_32992_PI429285431	1.196209	A	1.0295147	A	1.12248354811641	0	lncRNA	34607-1_{1..1850}	n339673|AK023614|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2117|NULL|0.2923570|-0.2315090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n339673|AK023614|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2117|NULL|0.2923570|-0.2315090	chr20	 39609352	 39611201	+	NA	NA	NA	NA	TOP1	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chr20:39657462-39664015"	NA	inter
CUST_27625_PI429285431	6.1056743	P	6.261547	P	0.897589248326551	0	lncRNA	29203-1_{1..443}	n324829|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171681|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171681|-1.0135200|-0.4694240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324829|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171681|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171681|-1.0135200|-0.4694240	chr21	 28506495	 28506937	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46392_PI429285431	1.0617492	A	1.1964195	A	0.910877973320855	0	lncRNA	50609-1_{1..1752}	"gi|383209667|ref|NR_046468.2| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 11, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|383209667|ref|NR_046468.2| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 11, non-coding RNA"	Chr14	101292445	101294196	+	55384	NR_046468.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0002919	0.89229786	A	0.8909356	A	1.00094469261943	0	lncRNA	ENST00000438156	NA	NA	NA	NA	XLOC_003370	NA	ENST00000438156	THC2727097	NA	"BROAD Institute lincRNA (XLOC_003370), lincRNA [TCONS_00005914]"	chr3:190415811-190415752	hs|3q28	Agilent_HUMAN_G3V2	ENST00000438156	ENST00000438156	chr3	190415752	190415811	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004767	3.027917	P	2.9022534	A	1.09100945157913	0	lncRNA	ENST00000432438	NA	NA	NA	NA	XLOC_005790	NA	ENST00000432438	THC2660178	NA	"BROAD Institute lincRNA (XLOC_005790), lincRNA [TCONS_00011529]"	chr6:98158970-98158911	hs|6q16.1	Agilent_HUMAN_G3V2	ENST00000432438	ENST00000432438	chr6	 98158911	 98158970	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44764_PI429285431	0.8827063	A	0.8849163	A	0.998469317422371	0	lncRNA	49307-2_{3001..5404}	"gi|365733562|ref|NR_045673.1| Homo sapiens chloride intracellular channel 5 (CLIC5), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|365733562|ref|NR_045673.1| Homo sapiens chloride intracellular channel 5 (CLIC5), transcript variant 5, non-coding RNA"	Chr6	 45869188	 45871591	-	53405	NR_045673.1	NA	NA	NA	NA	NA	inter
CUST_16201_PI429285431	3.385244	P	5.7865005	P	0.189299630484985	0	lncRNA	17907-1_{1..443}	lnc-UMODL1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UMODL1-1:2	chr21	 43474942	 43475384	+	lnc-UMODL1-1	lnc-UMODL1-1:2	XLOC_013952	linc-UMODL1-1	UMODL1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr21:43483068-43485216"	NA	inter
CUST_49891_PI429285431	0.9250456	A	1.4289224	A	0.705209199527185	0	lncRNA	53640-1_{1..1271}	hg19_lincRNAsTranscripts_TCONS_l2_00026702 range=chr7:76692367-76749453 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026702 range=chr7:76692367-76749453 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 76692367	 76693637	-	NA	NA	NA	NA	CCDC146	NA	chr7:76744671-76759453	inter
CUST_41895_PI429285431	4.1187735	P	4.122033	P	0.997743237092087	0	lncRNA	43606-1_{1..90}	ENST00000362207 ncrna:miRNA chromosome:GRCh37:11:43602944:43603033:1 gene:ENSG00000199077 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362207 ncrna:miRNA chromosome:GRCh37:11:43602944:43603033:1 gene:ENSG00000199077 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 43602944	 43603033	+	ENSG00000199077	ENST00000362207	NA	NA	LOC100131381	NA	chr11:43600529-43606151	inter
CUST_34523_PI429285431	0.92355	A	0.9282922	A	0.996718353850381	0	lncRNA	35987-1_{1..449}	n341402|BC032917|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3872|NULL|-1.0803800|-0.3487830	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341402|BC032917|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3872|NULL|-1.0803800|-0.3487830	chr8	  9112858	  9113306	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008437	0.8955288	A	0.8940336	A	1.00103693090587	0	lncRNA	TCONS_00022743	NA	NA	NA	NA	XLOC_011021	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011021), lincRNA [TCONS_00022743]"	chr14:52306636-52306577	hs|14q22.1	Agilent_HUMAN_G3V2	TCONS_00022743	TCONS_00022743	chr14	 52306577	 52306636	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2833_PI429285431	4.0941396	P	4.729196	P	0.643915641346099	0	lncRNA	2817-1_{1..366}	"transcript_id ""ENST00000457372.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457372.1"" | genecode_v17"	chr7	 53582685	 53583050	-	ENSG00000234105.1	ENST00000457372.1	GS1-278J22.1	GS1-278J22.1-001	NA	NA	NA	inter
CUST_10566_PI429285431	2.1581912	A	2.7070463	A	0.683562377495867	0	lncRNA	12098-1_{1..421}	lnc-ALX4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALX4-2:1	chr11	 44547380	 44547800	-	lnc-ALX4-2	lnc-ALX4-2:1	XLOC_009427	linc-ALX4-1	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80"	NA	inter
CUST_42488_PI429285431	7.8689694	P	7.908114	P	0.973231823137088	0	lncRNA	45249-1_{1..134}	ENST00000384111 ncrna:snoRNA chromosome:GRCh37:7:45143948:45144081:-1 gene:ENSG00000206838 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384111 ncrna:snoRNA chromosome:GRCh37:7:45143948:45144081:-1 gene:ENSG00000206838 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 45143948	 45144081	-	ENSG00000206838	ENST00000384111	NA	NA	TBRG4	NA	chr7:45139699-45151317	inter
CUST_23887_PI429285431	1.7522658	A	2.2758863	A	0.695623945220396	0	lncRNA	25445-1_{1..3000}	lnc-AC127496.3-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC127496.3-8:1	chr17	 78778767	 78781766	-	lnc-AC127496.3-8	lnc-AC127496.3-8:1	ENSG00000262833.1	RP11-28G8.1	RPTOR	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90chr17:78768767-78789432"	NA	inner
CUST_4547_PI429285431	0.88606954	A	0.8865455	A	0.99967014408237	0	lncRNA	4495-1_{1..430}	"transcript_id ""ENST00000444605.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444605.1"" | genecode_v17"	chr13	 19292907	 19293336	-	ENSG00000236169.1	ENST00000444605.1	RP11-38M15.3	RP11-38M15.3-001	NA	NA	NA	inter
LNCA_21_P0005506	2.0727212	A	0.8931739	A	2.26505691200442	0	lncRNA	TCONS_00013863	NA	NA	NA	NA	XLOC_006493	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006493), lincRNA [TCONS_00013863]"	chr7:69060824-69060765	hs|7q11.22	Agilent_HUMAN_G3V2	TCONS_00013863	TCONS_00013863	chr7	 69060765	 69060824	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003134	0.8936094	A	0.89261895	A	1.00068676333901	0	lncRNA	TCONS_00006549	NA	NA	NA	NA	XLOC_003172	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003172), lincRNA [TCONS_00006549]"	chr3:83825821-83825762	hs|3p12.1	Agilent_HUMAN_G3V2	TCONS_00006549	TCONS_00006549	chr3	 83825762	 83825821	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33671_PI429285431	3.7346764	P	3.7869205	P	0.964434991052691	0	lncRNA	35233-1_{1..818}	n340437|BC026261|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2898|NULL|0.0150140|-0.2477591	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340437|BC026261|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2898|NULL|0.0150140|-0.2477591	chr5	 39460971	 39461788	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48697_PI429285431	7.257061	P	7.3721514	P	0.923324452940102	0	lncRNA	52538-1_{1..334}	hg19_lincRNAsTranscripts_TCONS_l2_00013902 range=chr2:112641882-112645656 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013902 range=chr2:112641882-112645656 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	112641882	112642215	+	NA	NA	NA	NA	MERTK	NA	chr2:112645463-112655656	inter
CUST_51762_PI429285431	1.6396588	A	2.929298	A	0.409053315610282	0	lncRNA	55313-1_{1..1035}	hg19_lincRNAsTranscripts_TCONS_l2_00012221 range=chr19:302198-304321 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012221 range=chr19:302198-304321 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	   302198	   303232	+	NA	NA	NA	NA	MIER2	NA	chr19:305575-314321	inter
CUST_25570_PI429285431	1.4056565	A	2.1329362	A	0.604041802784876	0	lncRNA	27099-1_{1..477}	lnc-EDAR-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EDAR-3:1	chr2	109294895	109295371	-	lnc-EDAR-3	lnc-EDAR-3:1	ENSG00000228763.1	AC010095.5	LIMS1	NA	chr2:109284895-109303702	inner
CUST_47327_PI429285431	0.9222482	A	1.1022445	A	0.882705260113002	0	lncRNA	51384-1_{1..411}	"gi|310124024|ref|XR_109633.1| PREDICTED: Homo sapiens uncharacterized LOC100506470 (LOC100506470), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310124024|ref|XR_109633.1| PREDICTED: Homo sapiens uncharacterized LOC100506470 (LOC100506470), misc_RNA"	Chr20	 59654152	 59654562	+	100506470	XR_109633.2	NA	NA	NA	NA	NA	inter
CUST_51891_PI429285431	2.1924496	A	2.3715801	A	0.883235154207561	0	lncRNA	55440-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00013238 range=chr19:56050520-56057660 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013238 range=chr19:56050520-56057660 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 56050520	 56053519	-	NA	NA	NA	NA	SGK110	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr19:56052023-56056909"	NA	inner
CUST_32031_PI429285431	4.5830903	P	4.656765	P	0.950214613851738	0	lncRNA	33751-1_{1..2571}	n338597|BC035896|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1003|NULL|11.7780000|-0.1464165	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338597|BC035896|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1003|NULL|11.7780000|-0.1464165	chr1	245674303	245676873	+	NA	NA	NA	NA	KIF26B	NA	chr1:245664303-245859895	inner
CUST_46224_PI429285431	0.9193846	A	0.9121478	A	1.00502876954704	0	lncRNA	50464-1_{1..1461}	"gi|341915645|ref|XR_132731.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 371 (LINC00371), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915645|ref|XR_132731.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 371 (LINC00371), misc_RNA"	NA	NA	NA	NA	NA	XR_132731.1	NA	NA	NA	NA	NA	Unknown
CUST_8133_PI429285431	4.848254	P	5.296452	P	0.73295777826315	0	lncRNA	9736-1_{1..943}	lnc-CEBPB-7:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEBPB-7:5	chr20	 48928342	 48929284	+	lnc-CEBPB-7	lnc-CEBPB-7:5	ENSG00000203999	XLOC_013560	NA	NA	NA	inter
CUST_21622_PI429285431	0.9026966	A	1.6868443	A	0.580694912629538	0	lncRNA	23234-1_{1..722}	lnc-KIAA0196-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0196-3:1	chr8	126363623	126364344	-	lnc-KIAA0196-3	lnc-KIAA0196-3:1	ENSG00000254431.1	RP11-550A5.2	NSMCE2	NA	chr8:126353623-126373658	inner
CUST_26534_PI429285431	0.90904725	A	0.9206722	A	0.991974575743377	0	lncRNA	28041-1_{1..800}	lnc-ADAMTS18-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAMTS18-3:1	chr16	 77776740	 77777539	-	lnc-ADAMTS18-3	lnc-ADAMTS18-3:1	ENSG00000261707.1	RP11-264M12.2	NUDT7	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20chr16:77766740-77776154"	NA	inter
CUST_11724_PI429285431	7.9354444	P	8.279111	P	0.78803597639516	0	lncRNA	13302-1_{1..384}	lnc-ZMAT5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZMAT5-1:2	chr22	 30115537	 30115920	-	lnc-ZMAT5-1	lnc-ZMAT5-1:2	XLOC_014338	linc-NIPSNAP1	CABP7	NA	chr22:30116344-30125737	inter
CUST_32271_PI429285431	0.90154904	A	1.0114329	A	0.926662657190243	0	lncRNA	33959-1_{1..1950}	n338849|CR619219|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1272|NULL|3.2769700|-0.2092473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338849|CR619219|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1272|NULL|3.2769700|-0.2092473	chr2	 55646411	 55648360	+	NA	NA	NA	NA	CCDC88A	NA	chr2:55636411-55647057	inner
CUST_1285_PI429285431	0.90995556	A	0.92732745	A	0.98803092948797	0	lncRNA	1275-2_{3001..3699}	"transcript_id ""ENST00000451707.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451707.1"" | genecode_v17"	chr3	  1052819	  1053517	+	ENSG00000235158.1	ENST00000451707.1	AC087430.1	AC087430.1-001	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_11360_PI429285431	0.89468944	A	0.9069656	A	0.991526914960183	0	lncRNA	12924-2_{3001..3320}	lnc-BTG2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTG2-2:1	chr1	203370603	203370922	+	lnc-BTG2-2	lnc-BTG2-2:1	XLOC_000529	linc-PRELP	NA	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-17.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	inter
CUST_40987_PI429285431	1.9944957	A	2.1946032	A	0.870485698098453	0	lncRNA	41655-1_{1..1976}	n411128|NR_038952|lncRNA|Homosapiens||RefGeneNoncode|NR_038952||-0.9710150|-0.2327708	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n411128|NR_038952|lncRNA|Homosapiens||RefGeneNoncode|NR_038952||-0.9710150|-0.2327708	chr1	112282462	112284437	+	NA	NA	NA	NA	C1orf183	NA	chr1:112272462-112298419	inner
CUST_49519_PI429285431	1.2813982	A	1.5918875	A	0.80636822747891	0	lncRNA	53311-1_{1..1063}	hg19_lincRNAsTranscripts_TCONS_l2_00024694 range=chr6:29675772-29688930 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024694 range=chr6:29675772-29688930 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 29675772	 29676834	-	NA	NA	NA	NA	HLA-F	NA	chr6:29691117-29695073	inter
CUST_50172_PI429285431	0.9173811	A	1.0062991	A	0.940227641713814	0	lncRNA	53898-1_{1..1016}	hg19_lincRNAsTranscripts_TCONS_l2_00029226 range=chr9:24542844-24545816 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029226 range=chr9:24542844-24545816 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 24542844	 24543859	-	NA	NA	NA	NA	NA	NA	NA	inner
CUST_7448_PI429285431	0.8968382	A	0.9100081	A	0.990912860839824	0	lncRNA	9091-1_{1..564}	lnc-DCTD-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DCTD-4:4	chr4	183065200	183065763	-	lnc-DCTD-4	lnc-DCTD-4:4	ENSG00000177822	AC108142.1	NA	NA	NA	inter
CUST_19033_PI429285431	3.6110504	P	2.5637941	A	2.06659588100273	0	lncRNA	20723-1_{1..635}	lnc-GNAT1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNAT1-1:8	chr3	 50252085	 50252719	+	lnc-GNAT1-1	lnc-GNAT1-1:8	ENSG00000188338	SLC38A3	SLC38A3	NA	chr3:50242692-50258406	inner
CUST_36569_PI429285431	0.8980829	A	0.9091606	A	0.992350927670828	0	lncRNA	37765-1_{1..3000}	n345067|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_616|NULL|-1.2763600|-0.3778482	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345067|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_616|NULL|-1.2763600|-0.3778482	chrX	 55937879	 55940878	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22801_PI429285431	0.90363175	A	1.1272485	A	0.856415760027283	0	lncRNA	24381-1_{1..573}	lnc-AC110373.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC110373.1-3:1	chr4	120377948	120378520	+	lnc-AC110373.1-3	lnc-AC110373.1-3:1	ENSG00000250950.1	RP11-33B1.3	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-22.50;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00"	NA	inter
LNCA_21_P0011877	0.90195197	A	1.3629774	A	0.726469719385195	0	lncRNA	XR_112441	XR_112441	XR_112441	NA	NA	LOC100507800	uncharacterized LOC100507800	NA	THC2707941	NA	"PREDICTED: Homo sapiens hypothetical LOC100507800 (LOC100507800), miscRNA [XR_112441]"	chr2:223185982-223186241	hs|2q36.1	Agilent_HUMAN_G3V2	XR_112441	XR_112441	chr2	223185982	223186241	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12306_PI429285431	4.234619	P	3.9003325	P	1.26075373560722	0	lncRNA	13919-1_{1..518}	lnc-ZNF37A-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF37A-3:4	chr10	 38724058	 38724575	+	lnc-ZNF37A-3	lnc-ZNF37A-3:4	XLOC_008461	linc-BMS1-4	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90"	NA	inter
LNCA_21_P0012613	0.9009868	A	0.9097181	A	0.993966200944501	0	lncRNA	TCONS_l2_00020763	NA	NA	NA	NA	XLOC_l2_010833	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010833), lincRNA [TCONS_l2_00020763]"	chr4:130783888-130785484	hs|4q28.2	Agilent_HUMAN_G3V2	TCONS_l2_00020763	TCONS_l2_00020763	chr4	130783888	130785484	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45572_PI429285431	2.8401597	P	1.4098723	A	2.69500397334776	0	lncRNA	49968-1_{1..3000}	"gi|223278375|ref|NR_026777.1| Homo sapiens zinc finger protein 37B, pseudogene (ZNF37BP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|223278375|ref|NR_026777.1| Homo sapiens zinc finger protein 37B, pseudogene (ZNF37BP), non-coding RNA"	NA	NA	NA	NA	NA	NR_026777.1	NA	NA	NA	NA	NA	Unknown
CUST_17700_PI429285431	0.8966345	A	1.0706449	A	0.886375309530951	0	lncRNA	19429-1_{1..399}	lnc-ICOSLG-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ICOSLG-3:1	chr21	 45614149	 45614547	-	lnc-ICOSLG-3	lnc-ICOSLG-3:1	XLOC_014113	linc-CSTB-7	NA	NA	NA	inter
CUST_23502_PI429285431	2.442734	A	3.1805477	P	0.59964738635376	0	lncRNA	25069-1_{1..544}	lnc-LAMA1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LAMA1-2:1	chr18	  6874619	  6875162	-	lnc-LAMA1-2	lnc-LAMA1-2:1	ENSG00000263797.1	RP11-146G7.2	ARHGAP28	"hg19_refFlat_ARHGAP28:range=chr18:6837348-69121535'pad=0,hg19_refFlat_ARHGAP28:range=chr18:6837348-69121535'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50chr18:6864619-6885023"	NA	inner
CUST_35870_PI429285431	2.404576	A	2.50308	A	0.934001000201912	0	lncRNA	37262-2_{3001..6000}	n344535|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_83|NULL|-1.3130900|-0.3270477	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344535|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_83|NULL|-1.3130900|-0.3270477	chr7	 22865506	 22868505	+	NA	NA	NA	NA	FAM126A	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr7:22921440-22932065"	NA	inter
CUST_23310_PI429285431	0.8962772	A	1.4467746	A	0.682784683155833	0	lncRNA	24881-1_{1..510}	lnc-CD38-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CD38-2:3	chr4	 16321688	 16322197	+	lnc-CD38-2	lnc-CD38-2:3	ENSG00000263327.1	RP11-783N5.1	NA	NA	NA	inter
CUST_30027_PI429285431	6.682477	P	6.778616	P	0.935533357228126	0	lncRNA	31795-1_{1..464}	n334491|U23863|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218717|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218717|0.5035280|-0.0267087	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334491|U23863|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218717|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218717|0.5035280|-0.0267087	chrX	 70360553	 70361016	+	NA	NA	NA	NA	NLGN3	NA	chrX:70364681-70372114	inner
CUST_48514_PI429285431	12.797165	P	12.600347	P	1.14616758437266	0	lncRNA	52367-1_{1..426}	hg19_lincRNAsTranscripts_TCONS_l2_00015916 range=chr2:112186886-112199198 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015916 range=chr2:112186886-112199198 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	112186886	112187311	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8752_PI429285431	3.1043353	A	2.8720675	A	1.17468000073495	0	lncRNA	10294-1_{1..740}	lnc-GLT1D1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GLT1D1-1:8	chr12	129597610	129598349	+	lnc-GLT1D1-1	lnc-GLT1D1-1:8	ENSG00000249196	ENST00000508925	TMEM132D	NA	chr12:129587610-129607839	inner
CUST_3665_PI429285431	0.8836857	A	1.0690951	A	0.879399489399505	0	lncRNA	3634-1_{1..3000}	"transcript_id ""ENST00000439913.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439913.1"" | genecode_v17"	chr10	 43191483	 43194482	+	ENSG00000234864.1	ENST00000439913.1	AL022344.5	AL022344.5-001	NA	"hg19_refFlat_CUBN:range=chr10:16866974-171717645'pad=0,hg19_refFlat_CUBN:range=chr10:16866974-171717645'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90"	NA	inter
CUST_30052_PI429285431	8.672804	P	8.949986	P	0.825201300502256	0	lncRNA	31821-1_{1..315}	n334556|U52701|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220268_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220268_05|-0.8248330|-0.2367972	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334556|U52701|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220268_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220268_05|-0.8248330|-0.2367972	chr6	  3345148	  3345462	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3335148-3374561	inner
LNCA_21_P0008739	2.3363006	A	0.8968172	A	2.71223728351664	0	lncRNA	TCONS_00023673	NA	NA	NA	NA	XLOC_011471	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011471), lincRNA [TCONS_00023673]"	chr15:48297754-48297695	hs|15q21.1	Agilent_HUMAN_G3V2	TCONS_00023673	TCONS_00023673	chr15	 48297695	 48297754	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006468	2.4766536	A	3.24678	P	0.586366098601134	0	lncRNA	ENST00000456072	NA	NA	NA	NA	XLOC_008252	NA	ENST00000456072	NA	NA	"BROAD Institute lincRNA (XLOC_008252), lincRNA [TCONS_00017099]"	chrX:146982634-146982575	hs|Xq27.3	Agilent_HUMAN_G3V2	ENST00000456072	ENST00000456072	chrX	146982575	146982634	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34265_PI429285431	0.89200324	A	0.9061505	A	0.990241789968787	0	lncRNA	35766-1_{1..1719}	n341123|CR616845|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3589|NULL|1.2066400|-0.2862376	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341123|CR616845|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3589|NULL|1.2066400|-0.2862376	chr11	112160923	112162641	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7974_PI429285431	1.6471527	A	1.6547154	A	0.994771651459468	0	lncRNA	9586-1_{1..2228}	lnc-AL360004.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL360004.1-2:1	chr9	132872093	132874320	-	lnc-AL360004.1-2	lnc-AL360004.1-2:1	ENSG00000247421	ENST00000501899	GPR107	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40chr9:132862093-132883098"	NA	inner
LNCA_21_P0003224	0.8882716	A	0.8911021	A	0.998039970277337	0	lncRNA	TCONS_00006808	NA	NA	NA	NA	XLOC_002601	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002601), lincRNA [TCONS_00006808]"	chr3:26020280-26020339	hs|3p24.2	Agilent_HUMAN_G3V2	TCONS_00006808	TCONS_00006808	chr3	 26020280	 26020339	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003832	0.8880264	A	0.8906547	A	0.998179859733365	0	lncRNA	TCONS_00008792	NA	NA	NA	NA	XLOC_003539	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003539), lincRNA [TCONS_00008792]"	chr4:55221899-55224233	hs|4q12	Agilent_HUMAN_G3V2	TCONS_00008792	TCONS_00008792	chr4	 55221899	 55224233	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50930_PI429285431	0.87889016	A	0.88338375	A	0.996890126466567	0	lncRNA	54571-1_{1..470}	hg19_lincRNAsTranscripts_TCONS_l2_00005589 range=chr12:37969173-37970380 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005589 range=chr12:37969173-37970380 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 37969173	 37969642	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9266_PI429285431	10.662875	P	10.454165	P	1.15565438201828	0	lncRNA	10772-1_{1..3000}	lnc-LPIN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LPIN3-1:1	chr20	 40030759	 40033758	+	lnc-LPIN3-1	lnc-LPIN3-1:1	ENSG00000246885	ENST00000500201	CHD6	"hg19_refFlat_CHD6:range=chr20:40033233-401799765'pad=0,hg19_refFlat_CHD6:range=chr20:40033233-401799765'pad=0 3'pad=0 strand=- repeatMasking=none,-104.40chr20:40031170-40044133"	NA	inner
CUST_9111_PI429285431	1.4474788	A	0.8818487	A	1.48003377587805	0	lncRNA	10631-1_{1..963}	lnc-PERP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PERP-2:1	chr6	138188779	138189741	-	lnc-PERP-2	lnc-PERP-2:1	ENSG00000237499	RP11-356I2.4	TNFAIP3	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10chr6:138188581-138198841"	NA	inter
CUST_945_PI429285431	1.0956815	A	0.89587283	A	1.14854602489466	0	lncRNA	935-1_{1..371}	"transcript_id ""ENST00000420648.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420648.2"" | genecode_v17"	chr2	 78825037	 78825407	+	ENSG00000234877.2	ENST00000420648.2	AC092660.1	AC092660.1-001	NA	NA	NA	inter
CUST_10329_PI429285431	0.9046628	A	0.90582776	A	0.999192837191833	0	lncRNA	11857-1_{1..801}	lnc-API5-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-API5-4:2	chr11	 41881279	 41882079	+	lnc-API5-4	lnc-API5-4:2	XLOC_009113	linc-API5-2	NA	NA	NA	inter
CUST_14067_PI429285431	6.5920906	P	6.8308086	P	0.847498077091314	0	lncRNA	15713-1_{1..607}	lnc-MACROD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MACROD1-1:1	chr11	 63946057	 63946663	-	lnc-MACROD1-1	lnc-MACROD1-1:1	XLOC_009459	linc-MACROD1	STIP1	NA	chr11:63953587-63956364	inter
CUST_24889_PI429285431	2.350741	A	2.705099	A	0.782217652929362	0	lncRNA	26430-1_{1..560}	lnc-DLGAP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DLGAP3-1:1	chr1	 35253589	 35254148	-	lnc-DLGAP3-1	lnc-DLGAP3-1:1	ENSG00000255811.1	RP1-34M23.5	GJA4	"hg19_refFlat_GJB4:range=chr1:35226856-352276565'pad=0,hg19_refFlat_GJB4:range=chr1:35226856-352276565'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90chr1:35258599-35261348"	NA	inter
CUST_7835_PI429285431	0.879783	A	0.88163286	A	0.998718596456118	0	lncRNA	9459-1_{1..853}	lnc-TMPRSS15-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMPRSS15-3:1	chr21	 20132092	 20132944	-	lnc-TMPRSS15-3	lnc-TMPRSS15-3:1	ENSG00000224141	AL109763.2	NA	NA	NA	inter
CUST_45549_PI429285431	5.361594	P	3.929046	P	2.6992301621285	0	lncRNA	49949-1_{1..2341}	"gi|219555737|ref|NR_026560.1| Homo sapiens zinc finger protein 438 (ZNF438), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219555737|ref|NR_026560.1| Homo sapiens zinc finger protein 438 (ZNF438), transcript variant 8, non-coding RNA"	Chr10	 31133563	 31135903	-	220929	NR_026560.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001971	6.188323	P	6.655636	P	0.72331050003273	0	lncRNA	ENST00000442416	NA	NA	NA	NA	XLOC_001868	NA	ENST00000442416	THC2665942	NA	"BROAD Institute lincRNA (XLOC_001868), lincRNA [TCONS_00003111]"	chr2:220602243-220602302	hs|2q35	Agilent_HUMAN_G3V2	ENST00000442416	ENST00000442416	chr2	220602243	220602302	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44593_PI429285431	5.6641903	P	2.835183	A	7.10585032206912	0	lncRNA	49171-2_{3001..6000}	"gi|374253824|ref|NR_046207.1| Homo sapiens solute carrier family 12 (sodium/potassium/chloride transporters), member 2 (SLC12A2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|374253824|ref|NR_046207.1| Homo sapiens solute carrier family 12 (sodium/potassium/chloride transporters), member 2 (SLC12A2), transcript variant 3, non-coding RNA"	Chr5	127422483	127425482	+	6558	NR_046207.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00"	NA	inter
CUST_142_PI429201921	12.413771	P	13.029397	P	0.652646642103466	0	lncRNA	126-2_{3001..3824}	TC01004181.hg.1	TCONS_00000153-XLOC_000053 // Rinn lincRNAs // linc-FBXO44 chr1:+:11669587-11673412 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:11669587-11673412	NA	Affy_HUMAN_HTA2.0	TCONS_00000153-XLOC_000053	linc-FBXO44	chr1	 11669587	 11673412	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41967_PI429285431	7.503784	P	8.17033	P	0.630013216897959	0	lncRNA	43760-1_{1..74}	ENST00000580344 ncrna:miRNA chromosome:GRCh37:3:24562853:24562926:-1 gene:ENSG00000265028 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580344 ncrna:miRNA chromosome:GRCh37:3:24562853:24562926:-1 gene:ENSG00000265028 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 24562853	 24562926	-	ENSG00000265028	ENST00000580344	NA	NA	NA	NA	NA	inter
CUST_39553_PI429285431	0.8766606	A	0.87862694	A	0.998637965385239	0	lncRNA	40497-2_{3001..3609}	n387495|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ful.1||-0.5398650|-0.3317284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387495|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ful.1||-0.5398650|-0.3317284	chr6	  1164725	  1165333	+	NA	NA	NA	NA	NA	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.11;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60"	NA	inter
CUST_13067_PI429285431	4.7115726	P	5.182273	P	0.721614183248927	0	lncRNA	14694-1_{1..272}	lnc-CD207-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD207-1:1	chr2	 71087901	 71088172	-	lnc-CD207-1	lnc-CD207-1:1	XLOC_002153	linc-CD207-1	NA	NA	NA	inter
CUST_38232_PI429285431	6.452338	P	4.8364644	P	3.06497137485144	0	lncRNA	39294-1_{1..609}	n381690|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001nhf.1||1.7153500|-0.3292237	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n381690|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001nhf.1||1.7153500|-0.3292237	chr11	 50368317	 50368925	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28202_PI429285431	3.8111308	P	3.8202705	P	0.993684867513689	0	lncRNA	29831-1_{1..574}	n325485|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322464|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322464|1.7207000|-0.2924892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325485|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322464|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322464|1.7207000|-0.2924892	chr2	  2817042	  2817615	-	NA	NA	NA	NA	NA	"hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
CUST_31912_PI429285431	1.5818778	A	1.8105412	A	0.853425190368163	0	lncRNA	33642-1_{1..625}	n338467|BC038775|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|864|NULL|1.9824400|-0.2994213	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338467|BC038775|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|864|NULL|1.9824400|-0.2994213	chr1	202779365	202779989	-	NA	NA	NA	NA	KDM5B	NA	chr1:202769365-202777549	inter
CUST_48441_PI429285431	10.705106	P	10.540682	P	1.1207185387061	0	lncRNA	52294-1_{1..707}	hg19_lincRNAsTranscripts_TCONS_l2_00000681 range=chr1:168893336-168908348 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000681 range=chr1:168893336-168908348 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	168893336	168894042	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14714_PI429285431	0.9131501	A	0.8985217	A	1.01019121449477	0	lncRNA	16378-1_{1..1407}	lnc-WDR25-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR25-2:2	chr14	101045026	101046432	+	lnc-WDR25-2	lnc-WDR25-2:2	XLOC_010929	linc-DLK1-3	BEGAIN	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20chr14:101035026-101036131"	NA	inter
CUST_9411_PI429285431	6.972051	P	6.8044496	P	1.1231895358441	0	lncRNA	10914-1_{1..892}	lnc-ARHGEF9-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGEF9-1:8	chrX	 62780712	 62781603	-	lnc-ARHGEF9-1	lnc-ARHGEF9-1:8	XLOC_008174	linc-SPIN4	NA	NA	NA	inter
CUST_44947_PI429285431	7.5843625	P	7.4536767	P	1.09481400873969	0	lncRNA	49459-1_{1..2075}	"gi|386642889|ref|NR_047689.1| Homo sapiens phosphorylase kinase, gamma 1 (muscle) (PHKG1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386642889|ref|NR_047689.1| Homo sapiens phosphorylase kinase, gamma 1 (muscle) (PHKG1), transcript variant 4, non-coding RNA"	Chr7	 56147976	 56150050	-	5260	NR_047689.1	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50"	NA	inter
CUST_39810_PI429285431	0.9143573	A	0.911882	A	1.00171721995246	0	lncRNA	40720-1_{1..652}	n406221|NR_003673_7|lncRNA|Homosapiens||RefGeneNoncode|NR_003673_7||-0.7587120|-0.4053234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406221|NR_003673_7|lncRNA|Homosapiens||RefGeneNoncode|NR_003673_7||-0.7587120|-0.4053234	chr6	  3189730	  3190381	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23602_PI429285431	0.8840652	A	1.1852671	A	0.811575995877814	0	lncRNA	25168-1_{1..679}	lnc-PTPRZ1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPRZ1-2:3	chr7	121948541	121949219	+	lnc-PTPRZ1-2	lnc-PTPRZ1-2:3	ENSG00000230316.2	RP11-560I19.4	FEZF1	NA	chr7:121938541-121944565	inter
CUST_42730_PI429285431	0.8900447	A	0.8965391	A	0.995508541853176	0	lncRNA	45676-1_{1..65}	ENST00000390968 ncrna:snoRNA chromosome:GRCh37:14:26275854:26275918:-1 gene:ENSG00000212270 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390968 ncrna:snoRNA chromosome:GRCh37:14:26275854:26275918:-1 gene:ENSG00000212270 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 26275854	 26275918	-	ENSG00000212270	ENST00000390968	NA	NA	NA	NA	NA	inter
CUST_2334_PI429285431	0.8881418	A	0.89531535	A	0.995040015591732	0	lncRNA	2326-1_{1..504}	"transcript_id ""ENST00000433406.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433406.2"" | genecode_v17"	chr5	120658245	120658748	+	ENSG00000229855.3	ENST00000433406.2	CTC-546K23.1	CTC-546K23.1-001	NA	NA	NA	inter
CUST_23407_PI429285431	8.021046	P	8.02989	P	0.993888557636377	0	lncRNA	24975-1_{1..652}	lnc-ANKRD30A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ANKRD30A-2:1	chr10	 37635705	 37636356	+	lnc-ANKRD30A-2	lnc-ANKRD30A-2:1	ENSG00000235687.2	RP11-20F24.4	NA	NA	NA	inter
CUST_22237_PI429285431	0.91792226	A	1.3148615	A	0.759467829694292	0	lncRNA	23837-1_{1..563}	lnc-PHF14-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHF14-2:1	chr7	 11453441	 11454003	+	lnc-PHF14-2	lnc-PHF14-2:1	ENSG00000230435.1	AC004160.4	THSD7A	"hg19_refFlat_THSD7A:range=chr7:11415421-118715725'pad=0,hg19_refFlat_THSD7A:range=chr7:11415421-118715725'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20chr7:11443441-11463705"	NA	inner
CUST_28841_PI429285431	2.8425832	P	3.0191216	A	0.884823495285397	0	lncRNA	30549-1_{1..641}	n326256|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088524|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088524|-1.0724700|-0.2024721	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326256|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000088524|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000088524|-1.0724700|-0.2024721	chr1	207768508	207769148	-	NA	NA	NA	NA	CR1	"hg19_refFlat_CR1:range=chr1:207669613-2078127545'pad=0,hg19_refFlat_CR1:range=chr1:207669613-2078127545'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10chr1:207758508-207797548"	NA	inner
CUST_15024_PI429285431	7.1120877	P	7.092908	P	1.01338311782825	0	lncRNA	16686-1_{1..258}	lnc-EPN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPN1-1:1	chr19	 56215794	 56216051	+	lnc-EPN1-1	lnc-EPN1-1:1	XLOC_013161	linc-RFPL4A	NLRP9	NA	chr19:56218943-56225917	inter
CUST_50509_PI429285431	0.9077767	A	1.3672631	A	0.727245112126404	0	lncRNA	54205-1_{1..2658}	hg19_lincRNAsTranscripts_TCONS_l2_00030583 range=chrX:118380534-118400772 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030583 range=chrX:118380534-118400772 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	118380534	118383191	-	NA	NA	NA	NA	PGRMC1	NA	chrX:118370534-118378429	inter
CUST_43578_PI429285431	6.627341	P	5.925558	P	1.62651372915517	0	lncRNA	48349-1_{1..3000}	"gi|219803377|ref|NR_002212.3| Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1 (NUDT4P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219803377|ref|NR_002212.3| Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1 (NUDT4P1), non-coding RNA"	NW_003871055.3	  5564013	  5567012	+	440672	NR_002212.4	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70"	NA	Unknown
CUST_7750_PI429285431	1.143329	A	1.5055736	A	0.777953268220014	0	lncRNA	9379-1_{1..3000}	lnc-IFT140-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IFT140-2:1	chr16	  1727196	  1730195	-	lnc-IFT140-2	lnc-IFT140-2:1	ENSG00000245096	ENST00000500567	CRAMP1L	"hg19_refFlat_CRAMP1L:range=chr16:1664641-17240465'pad=0,hg19_refFlat_CRAMP1L:range=chr16:1664641-17240465'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40chr16:1717196-1727909"	NA	inner
CUST_12725_PI429285431	4.2337127	P	3.4240146	P	1.75284460200186	0	lncRNA	14344-1_{1..1447}	lnc-ENOSF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENOSF1-1:1	chr18	   717910	   719356	-	lnc-ENOSF1-1	lnc-ENOSF1-1:1	XLOC_012740	linc-ENOSF1	YES1	NA	chr18:721592-727930	inter
LNCA_21_P0003460	2.1169224	A	0.9198922	A	2.29267236356786	0	lncRNA	ENST00000510772	NA	NA	NA	NA	XLOC_003938	NA	ENST00000510772	NA	NA	"BROAD Institute lincRNA (XLOC_003938), lincRNA [TCONS_00007752]"	chr4:41885139-41885080	hs|4p13	Agilent_HUMAN_G3V2	ENST00000510772	ENST00000510772	chr4	 41885080	 41885139	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_655_PI429285431	5.869862	P	6.219753	P	0.784643377851949	0	lncRNA	647-1_{1..574}	"transcript_id ""ENST00000452701.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452701.1"" | genecode_v17"	chr2	  2838036	  2838609	-	ENSG00000237720.1	ENST00000452701.1	AC011995.1	AC011995.1-001	NA	NA	NA	inter
CUST_45533_PI429285431	5.535083	P	5.887045	P	0.783517824218041	0	lncRNA	49940-2_{3001..6000}	"gi|223468639|ref|NR_026794.1| Homo sapiens uncharacterized LOC731789 (LOC731789), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223468639|ref|NR_026794.1| Homo sapiens uncharacterized LOC731789 (LOC731789), non-coding RNA"	Chr10	 26935037	 26938036	+	731789	NR_026794.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0012256	2.5619664	A	3.2346008	P	0.627360064323528	0	lncRNA	TCONS_l2_00017637	NA	NA	NA	NA	XLOC_l2_009319	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009319), lincRNA [TCONS_l2_00017637]"	chr22:23735227-23735386	hs|22q11.23	Agilent_HUMAN_G3V2	TCONS_l2_00017637	TCONS_l2_00017637	chr22	 23735227	 23735386	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34819_PI429285431	0.91757935	A	0.9273746	A	0.993233446998005	0	lncRNA	36251-1_{1..1460}	n341726|BC031969|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4199|NULL|-0.8552540|-0.1914460	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n341726|BC031969|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4199|NULL|-0.8552540|-0.1914460	chr9	 96718115	 96719574	+	NA	NA	NA	NA	BARX1	NA	chr9:96713909-96717608	inter
CUST_18512_PI429285431	0.89883953	A	0.91448265	A	0.989215588739378	0	lncRNA	20226-1_{1..965}	lnc-FBXO25-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FBXO25-5:2	chr8	   703456	   704420	+	lnc-FBXO25-5	lnc-FBXO25-5:2	ENSG00000237647	CTD-3212A4.1	NA	NA	NA	inter
LNCA_21_P0003638	1.732199	A	0.9258573	A	1.74877138546398	0	lncRNA	TCONS_00008199	NA	NA	NA	NA	XLOC_003652	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003652), lincRNA [TCONS_00008199]"	chr4:115380528-115412059	hs|4q26	Agilent_HUMAN_G3V2	TCONS_00008199	TCONS_00008199	chr4	115380528	115412059	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25154_PI429285431	2.4981077	A	2.7496443	A	0.840001261720548	0	lncRNA	26692-1_{1..693}	lnc-THAP10-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-THAP10-3:1	chr15	 71403571	 71404263	-	lnc-THAP10-3	lnc-THAP10-3:1	ENSG00000261746.1	RP11-673C5.4	CT62	NA	chr15:71393571-71407839	inner
CUST_41198_PI429285431	3.661682	P	4.20112	P	0.688038881534817	0	lncRNA	42068-1_{1..75}	ENST00000582691 ncrna:miRNA chromosome:GRCh37:15:51534387:51534461:1 gene:ENSG00000266593 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582691 ncrna:miRNA chromosome:GRCh37:15:51534387:51534461:1 gene:ENSG00000266593 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 51534387	 51534461	+	ENSG00000266593	ENST00000582691	NA	NA	CYP19A1	NA	chr15:51524387-51544461	inner
CUST_48805_PI429285431	2.2034075	A	2.5759988	A	0.772393912995723	0	lncRNA	52643-1_{1..675}	hg19_lincRNAsTranscripts_TCONS_l2_00014324 range=chr2:241874457-241889057 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014324 range=chr2:241874457-241889057 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	241874457	241875131	+	NA	NA	NA	NA	LOC728763	NA	chr2:241868593-241899057	inter
CUST_48475_PI429285431	7.289023	P	6.8421335	P	1.36309819982615	0	lncRNA	52327-1_{1..789}	hg19_lincRNAsTranscripts_TCONS_l2_00000847 range=chr1:224180427-224192438 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000847 range=chr1:224180427-224192438 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	224180427	224181215	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18970_PI429285431	1.0791843	A	1.1182728	A	0.97326966853427	0	lncRNA	20662-1_{1..2945}	lnc-RP11-181C3.1.1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-181C3.1.1-4:2	chr12	 98150216	 98153160	-	lnc-RP11-181C3.1.1-4	lnc-RP11-181C3.1.1-4:2	ENSG00000257501	RP11-1016B18.1	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50"	NA	inter
CUST_16184_PI429285431	0.90395236	A	0.9147873	A	0.992517923032773	0	lncRNA	17889-1_{1..387}	lnc-DET1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DET1-2:5	chr15	 89147578	 89147964	-	lnc-DET1-2	lnc-DET1-2:5	XLOC_011569	linc-DET1-1	NA	NA	NA	inter
CUST_8308_PI429285431	4.078871	P	4.211716	P	0.91203114688802	0	lncRNA	9892-1_{1..2929}	lnc-TSSK6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSSK6-1:2	chr19	 19466482	 19469410	-	lnc-TSSK6-1	lnc-TSSK6-1:2	ENSG00000245833	ENST00000501391	MAU2	"hg19_refFlat_MAU2:range=chr19:19431669-194665915'pad=0,hg19_refFlat_MAU2:range=chr19:19431669-194665915'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70chr19:19456482-19469563"	NA	inner
LNCA_21_P0002865	7.316311	P	6.2911983	P	2.03511835673532	0	lncRNA	ENST00000479244	NA	NA	NA	NA	XLOC_003176	NA	ENST00000479244	NA	NA	"BROAD Institute lincRNA (XLOC_003176), lincRNA [TCONS_00005798]"	chr3:86313764-86313705	hs|3p12.1	Agilent_HUMAN_G3V2	ENST00000479244	ENST00000479244	chr3	 86313705	 86313764	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36344_PI429285431	1.0061432	A	1.3324435	A	0.797579204744313	0	lncRNA	37573-1_{1..3000}	n344870|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_419|NULL|-1.3413200|-0.3587940	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344870|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_419|NULL|-1.3413200|-0.3587940	chr6	 22588789	 22591788	-	NA	NA	NA	NA	NA	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10"	NA	inter
LNCA_21_P0003183	1.097831	A	1.277122	A	0.883136899653993	0	lncRNA	TCONS_00006679	NA	NA	NA	NA	XLOC_003276	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003276), lincRNA [TCONS_00006679]"	chr3:148164690-148164076	hs|3q24	Agilent_HUMAN_G3V2	TCONS_00006679	TCONS_00006679	chr3	148164076	148164690	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003508	3.232608	P	3.1102715	P	1.08849629732345	0	lncRNA	ENST00000507844	NA	NA	NA	NA	XLOC_004083	NA	ENST00000507844	NA	NA	"BROAD Institute lincRNA (XLOC_004083), lincRNA [TCONS_00007836]"	chr4:134792505-134792446	hs|4q28.3	Agilent_HUMAN_G3V2	ENST00000507844	ENST00000507844	chr4	134792446	134792505	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007843	0.9026028	A	0.9122657	A	0.993324568456702	0	lncRNA	TCONS_00021176	NA	NA	NA	NA	XLOC_009820	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009820), lincRNA [TCONS_00021176]"	chr12:85817982-85818041	hs|12q21.31	Agilent_HUMAN_G3V2	TCONS_00021176	TCONS_00021176	chr12	 85817982	 85818041	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5218_PI429285431	0.8976648	A	0.90096885	A	0.997712427549068	0	lncRNA	5159-1_{1..561}	"transcript_id ""ENST00000558269.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558269.1"" | genecode_v17"	chr15	 69571014	 69571574	+	ENSG00000259504.1	ENST00000558269.1	RP11-352D13.5	RP11-352D13.5-001	GLCE	NA	chr15:69561014-69564544	inter
CUST_31206_PI429285431	3.4767768	P	3.845317	P	0.774565849683364	0	lncRNA	33000-1_{1..1783}	n337652|BC042499|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|31|NULL|-0.8124980|-0.1634849	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337652|BC042499|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|31|NULL|-0.8124980|-0.1634849	chr1	  5553037	  5554819	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48492_PI429285431	1.1176286	A	0.9041947	A	1.15944461004555	0	lncRNA	52345-1_{1..224}	hg19_lincRNAsTranscripts_TCONS_l2_00000927 range=chr1:241823781-241827485 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000927 range=chr1:241823781-241827485 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	241823781	241824004	+	NA	NA	NA	NA	WDR64	NA	chr1:241815580-241837485	inner
CUST_46045_PI429285431	8.28752	P	7.60034	P	1.61013315337656	0	lncRNA	50322-1_{1..2026}	"gi|344030195|ref|NR_045017.1| Homo sapiens LETM1 domain containing 1 (LETMD1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|344030195|ref|NR_045017.1| Homo sapiens LETM1 domain containing 1 (LETMD1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_045017.1	NA	NA	NA	NA	NA	Unknown
CUST_15647_PI429285431	0.8853132	A	0.8908446	A	0.99617326636381	0	lncRNA	17340-1_{1..501}	lnc-CRH-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRH-4:1	chr8	 66933570	 66934070	-	lnc-CRH-4	lnc-CRH-4:1	XLOC_007107	linc-PDE7A	DNAJC5B	NA	chr8:66933791-66943720	inter
CUST_50525_PI429285431	18.058746	P	17.856457	P	1.15052234236895	0	lncRNA	54221-1_{1..785}	hg19_lincRNAsTranscripts_TCONS_l2_00030383 range=chrX:147133553-147134419 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030383 range=chrX:147133553-147134419 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	147133553	147134337	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34358_PI429285431	4.2631445	P	4.3621507	P	0.933675932422683	0	lncRNA	35846-1_{1..555}	n341227|AF086424|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3695|NULL|-1.2061700|-0.4400249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341227|AF086424|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3695|NULL|-1.2061700|-0.4400249	chr7	 39622403	 39622957	+	NA	NA	NA	NA	C7orf36	NA	chr7:39612403-39612480	inter
CUST_15440_PI429285431	7.7972145	P	7.2374353	P	1.47404360222665	0	lncRNA	17128-1_{1..3000}	lnc-DCTD-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCTD-6:1	chr4	182186098	182189097	-	lnc-DCTD-6	lnc-DCTD-6:1	XLOC_004192	linc-AGA-5	NA	NA	NA	inter
CUST_24286_PI429285431	1.0948535	A	2.1545322	A	0.479738889545584	0	lncRNA	25837-1_{1..1609}	lnc-ZNF609-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZNF609-3:1	chr15	 65010265	 65011873	+	lnc-ZNF609-3	lnc-ZNF609-3:1	ENSG00000259635.1	AC100830.3	NA	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_12436_PI429285431	3.5474856	P	2.8614287	A	1.6088801949874	0	lncRNA	14049-1_{1..556}	lnc-JPH4-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JPH4-1:5	chr14	 24198787	 24199342	-	lnc-JPH4-1	lnc-JPH4-1:5	XLOC_010971	linc-JPH4-2	NA	NA	NA	inter
CUST_12952_PI429285431	0.8885386	A	0.8973926	A	0.993881668549737	0	lncRNA	14580-1_{1..1334}	lnc-SERTAD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERTAD2-1:1	chr2	 64750137	 64751470	-	lnc-SERTAD2-1	lnc-SERTAD2-1:1	XLOC_002128	linc-PELI1-1	AFTPH	NA	chr2:64751439-64761427	inter
CUST_43804_PI429285431	0.8935109	A	0.90460455	A	0.992339956599774	0	lncRNA	48531-1_{1..1944}	"gi|336176084|ref|NR_038434.1| Homo sapiens uncharacterized LOC100506474 (LOC100506474), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336176084|ref|NR_038434.1| Homo sapiens uncharacterized LOC100506474 (LOC100506474), non-coding RNA"	Chr2	 13106908	 13108851	-	100506474	NR_038434.1	NA	NA	NA	NA	NA	inter
CUST_9460_PI429285431	0.90875435	A	0.9167168	A	0.994496052758033	0	lncRNA	10966-1_{1..1018}	lnc-RAB1A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB1A-2:1	chr2	 65279514	 65280531	-	lnc-RAB1A-2	lnc-RAB1A-2:1	XLOC_002132	linc-SERTAD2-3	CEP68	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10chr2:65283495-65290151"	NA	inter
CUST_9718_PI429285431	0.89261806	A	0.89055216	A	1.00143299852287	0	lncRNA	11234-1_{1..296}	lnc-SLC4A3-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC4A3-8:1	chr2	221605184	221605479	+	lnc-SLC4A3-8	lnc-SLC4A3-8:1	XLOC_001873	linc-CCDC140-6	NA	NA	NA	inter
CUST_45571_PI429285431	3.4023232	P	3.3219965	P	1.05725743065212	0	lncRNA	49967-1_{1..2322}	"gi|223555972|ref|NR_026827.1| Homo sapiens uncharacterized LOC84856 (LOC84856), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223555972|ref|NR_026827.1| Homo sapiens uncharacterized LOC84856 (LOC84856), non-coding RNA"	Chr10	 42970939	 42973260	+	84856	NR_026827.1	NA	NA	NA	NA	NA	inter
CUST_39200_PI429285431	5.2933226	P	3.267937	P	4.0710067117243	0	lncRNA	40175-1_{1..2062}	n385975|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xcm.1||2.0169000|-0.2285734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385975|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xcm.1||2.0169000|-0.2285734	chr1	207974866	207976927	-	NA	NA	NA	NA	CD46	NA	chr1:207964866-207968861	inter
CUST_38814_PI429285431	1.4634649	A	2.1465344	A	0.622838702599112	0	lncRNA	39807-2_{3001..3699}	n384580|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jcp.3||-0.0763138|-0.2590239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384580|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jcp.3||-0.0763138|-0.2590239	chr5	  1600673	  1601371	-	NA	NA	NA	NA	NA	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CCDC127:range=chr5:205412-2169645'pad=0,hg19_refFlat_CCDC127:range=chr5:205412-2169645'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00"	NA	inter
CUST_42423_PI429285431	5.8553095	P	5.771888	P	1.05952784275111	0	lncRNA	45138-1_{1..76}	ENST00000583420 ncrna:snoRNA chromosome:GRCh37:HSCHR6_MHC_COX:31491609:31491684:-1 gene:ENSG00000263359 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583420 ncrna:snoRNA chromosome:GRCh37:HSCHR6_MHC_COX:31491609:31491684:-1 gene:ENSG00000263359 gene_biotype:snoRNA transcript_biotype:snoRNA	chrHSCHR6_MHC_COX	 31491609	 31491684	-	ENSG00000263359	ENST00000583420	NA	NA	NA	NA	NA	Unknown
CUST_43299_PI429285431	2.5525794	A	3.040314	A	0.713144037492716	0	lncRNA	48117-1_{1..447}	ENST00000599584 havana:sense_overlapping chromosome:GRCh37:19:6386773:6390411:-1 gene:ENSG00000269444 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000599584 havana:sense_overlapping chromosome:GRCh37:19:6386773:6390411:-1 gene:ENSG00000269444 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	chr19	  6386773	  6387219	-	ENSG00000269444	ENST00000599584	NA	NA	LOC390877	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30chr19:6396362-6400411"	NA	inner
CUST_37493_PI429285431	0.89166754	A	0.8843398	A	1.00509212333587	0	lncRNA	38595-1_{1..1497}	n345955|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1504|NULL|-1.2833500|-0.3871640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345955|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1504|NULL|-1.2833500|-0.3871640	chr9	 88444453	 88445949	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011568	2.4804127	A	3.7437913	P	0.416567271350588	0	lncRNA	TCONS_00025589	NA	NA	NA	NA	XLOC_l2_005997	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012419), lincRNA [TCONS_00025589]"	chr17:20479006-20478947	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_00025589	TCONS_00025589	chr17	 20478947	 20479006	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012619	2.6211305	A	1.9900866	A	1.5486851801805	0	lncRNA	ENST00000514475	NA	NA	NA	NA	XLOC_l2_010863	NA	ENST00000514475	THC2697481	NA	"BROAD Institute lincRNA (XLOC_l2_010863), lincRNA [TCONS_l2_00020791]"	chr4:144481291-144493614	hs|4q31.21	Agilent_HUMAN_G3V2	ENST00000514475	ENST00000514475	chr4	144481291	144493614	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012262	3.0742185	P	3.6820102	P	0.656200364343602	0	lncRNA	TCONS_l2_00017657	NA	NA	NA	NA	XLOC_l2_009331	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009331), lincRNA [TCONS_l2_00017657]"	chr22:25733239-25735894	hs|22q11.23	Agilent_HUMAN_G3V2	TCONS_l2_00017657	TCONS_l2_00017657	chr22	 25733239	 25735894	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11702_PI429285431	0.91271627	A	1.3124528	A	0.757996698616604	0	lncRNA	13280-1_{1..286}	lnc-SUMF2-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUMF2-5:3	chr7	 56742545	 56742830	+	lnc-SUMF2-5	lnc-SUMF2-5:3	XLOC_006112	linc-ZNF716-3	NA	NA	NA	inter
CUST_1790_PI429285431	0.90769994	A	0.91476786	A	0.995112872239703	0	lncRNA	1776-1_{1..546}	"transcript_id ""ENST00000398777.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000398777.3"" | genecode_v17"	chr4	 62009375	 62009920	+	ENSG00000240152.2	ENST00000398777.3	RP11-16N2.1	RP11-16N2.1-002	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-17.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90"	NA	inter
CUST_37652_PI429285431	0.8804139	A	0.8819386	A	0.998943716754103	0	lncRNA	38745-1_{1..2454}	n346132|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1682|NULL|-1.5733000|-0.2412531	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346132|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1682|NULL|-1.5733000|-0.2412531	chr3	 32039747	 32042200	+	NA	NA	NA	NA	ZNF860	NA	chr3:32029747-32033228	inter
LNCA_21_P0002063	0.8868452	A	0.8858925	A	1.00066057940546	0	lncRNA	ENST00000415448	NA	NA	NA	NA	XLOC_002147	NA	ENST00000415448	NA	NA	"BROAD Institute lincRNA (XLOC_002147), lincRNA [TCONS_00003319]"	chr2:69060007-69059948	hs|2p13.3	Agilent_HUMAN_G3V2	ENST00000415448	ENST00000415448	chr2	 69059948	 69060007	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011876	1.6766707	A	1.7090911	A	0.977778508177496	0	lncRNA	THC2707941	NA	NA	NA	NA	XLOC_l2_007783	NA	NA	THC2707941	NA	"BROAD Institute lincRNA (XLOC_l2_007783), lincRNA [TCONS_l2_00014271]"	NA	NA	Agilent_HUMAN_G3V2	THC2707941	THC2707941	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35208_PI429285431	5.182	P	5.44075	P	0.835811781518529	0	lncRNA	36608-1_{1..1960}	n342193|AK056725|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4683|NULL|0.4237910|-0.1847565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342193|AK056725|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4683|NULL|0.4237910|-0.1847565	chr12	 52315184	 52317143	+	NA	NA	NA	NA	ACVRL1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30chr12:52305184-52317145"	NA	inner
LNCA_21_P0008933	0.8881609	A	0.88699603	A	1.00080775241263	0	lncRNA	THC2749792	NA	NA	NA	NA	XLOC_011716	NA	NA	THC2749792	NA	"BROAD Institute lincRNA (XLOC_011716), lincRNA [TCONS_00024391]"	chr16:050442300-050442359	hs|16q12.1	Agilent_HUMAN_G3V2	THC2749792	THC2749792	chr16	 50442300	 50442359	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41416_PI429285431	4.6213393	P	4.3026953	P	1.24715778479157	0	lncRNA	42557-1_{1..79}	ENST00000390209 ncrna:miRNA chromosome:GRCh37:1:117214371:117214449:1 gene:ENSG00000211543 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390209 ncrna:miRNA chromosome:GRCh37:1:117214371:117214449:1 gene:ENSG00000211543 gene_biotype:miRNA transcript_biotype:miRNA	chr1	117214371	117214449	+	ENSG00000211543	ENST00000390209	NA	NA	IGSF3	NA	chr1:117204371-117210314	inter
CUST_49143_PI429285431	6.8902497	P	6.7109003	P	1.13237311339439	0	lncRNA	52970-1_{1..1988}	hg19_lincRNAsTranscripts_TCONS_l2_00020706 range=chr4:119553329-119556177 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020706 range=chr4:119553329-119556177 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	119553329	119555316	+	NA	NA	NA	NA	METTL14	NA	chr4:119557825-119566177	inter
CUST_34292_PI429285431	0.8842885	A	0.9716188	A	0.941262941001612	0	lncRNA	35790-1_{1..2338}	n341152|AK095187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3618|NULL|1.0440900|-0.2943967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341152|AK095187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3618|NULL|1.0440900|-0.2943967	chr11	126936896	126939233	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38521_PI429285431	0.8977922	A	0.9078313	A	0.993065580954563	0	lncRNA	39532-1_{1..3000}	n383175|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002hrd.1||6.9942200|-0.1710995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383175|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002hrd.1||6.9942200|-0.1710995	chr17	 37186158	 37189157	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00"	NA	inter
CUST_44088_PI429285431	2.1386874	A	1.3673437	A	1.70685878075655	0	lncRNA	48755-1_{1..1866}	"gi|288557235|ref|NR_033308.1| Homo sapiens RAB17, member RAS oncogene family (RAB17), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|288557235|ref|NR_033308.1| Homo sapiens RAB17, member RAS oncogene family (RAB17), transcript variant 2, non-coding RNA"	Chr2	238482965	238484830	-	64284	NR_033308.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0006694	1.3148615	A	1.5856036	A	0.828893066372323	0	lncRNA	ENST00000414903	NA	NA	NA	NA	XLOC_008556	NA	ENST00000414903	NA	NA	"BROAD Institute lincRNA (XLOC_008556), lincRNA [TCONS_00017854]"	chr10:92262663-92262722	hs|10q23.31	Agilent_HUMAN_G3V2	ENST00000414903	ENST00000414903	chr10	 92262663	 92262722	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41644_PI429285431	2.2671924	A	2.613017	A	0.786858104185206	0	lncRNA	43047-1_{1..84}	ENST00000579929 ncrna:miRNA chromosome:GRCh37:6:170639849:170639932:1 gene:ENSG00000266245 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579929 ncrna:miRNA chromosome:GRCh37:6:170639849:170639932:1 gene:ENSG00000266245 gene_biotype:miRNA transcript_biotype:miRNA	chr6	170639849	170639932	+	ENSG00000266245	ENST00000579929	NA	NA	FAM120B	NA	chr6:170629849-170649932	inner
CUST_16081_PI429285431	0.9051719	A	0.9002511	A	1.00341666217539	0	lncRNA	17784-1_{1..601}	lnc-PHF20L1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHF20L1-2:1	chr8	133513211	133513811	+	lnc-PHF20L1-2	lnc-PHF20L1-2:1	XLOC_006929	linc-PHF20L1	NA	NA	NA	inter
LNCA_21_P0004753	0.89358336	A	0.89219934	A	1.00095978986462	0	lncRNA	ENST00000454135	NA	NA	NA	NA	XLOC_005741	NA	ENST00000454135	THC2653984	NA	"BROAD Institute lincRNA (XLOC_005741), lincRNA [TCONS_00011501]"	chr6:50566366-50566307	hs|6p12.3	Agilent_HUMAN_G3V2	ENST00000454135	ENST00000454135	chr6	 50566307	 50566366	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14165_PI429285431	1.1610552	A	0.9163727	A	1.18483199125924	0	lncRNA	15816-1_{1..234}	lnc-RP11-389E17.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-389E17.1.1-3:1	chr4	180227736	180227969	+	lnc-RP11-389E17.1.1-3	lnc-RP11-389E17.1.1-3:1	XLOC_003799	linc-ODZ3-1	NA	NA	NA	inter
CUST_11666_PI429285431	0.8838269	A	0.8852819	A	0.998991979246882	0	lncRNA	13243-1_{1..1187}	lnc-HOMER1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOMER1-1:1	chr5	 78663023	 78664209	-	lnc-HOMER1-1	lnc-HOMER1-1:1	XLOC_004901	linc-DMGDH-1	HOMER1	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90chr5:78669786-78673947"	NA	inter
CUST_15937_PI429285431	0.9225951	A	0.89856637	A	1.0167949216649	0	lncRNA	17634-1_{1..567}	lnc-MTX2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTX2-1:4	chr2	177520426	177520992	+	lnc-MTX2-1	lnc-MTX2-1:4	XLOC_001765	linc-HNRNPA3-4	NA	NA	NA	inter
LNCA_21_P0004818	3.1638417	P	3.4204197	P	0.837071056949535	0	lncRNA	TCONS_00011641	NA	NA	NA	NA	XLOC_005126	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005126), lincRNA [TCONS_00011641]"	chr6:2329927-2329986	hs|6p25.2	Agilent_HUMAN_G3V2	TCONS_00011641	TCONS_00011641	chr6	  2329927	  2329986	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002717	3.9668057	P	4.9135447	P	0.518803817325615	0	lncRNA	ENST00000488425	NA	BC015846	NA	Hs.526761	XLOC_003239	NA	ENST00000488425	THC2610737	NA	"BROAD Institute lincRNA (XLOC_003239), lincRNA [TCONS_00006643]"	chr3:127043450-127043391	hs|3q21.3	Agilent_HUMAN_G3V2	ENST00000488425	ENST00000488425	chr3	127043391	127043450	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26306_PI429285431	0.88611877	A	0.88634515	A	0.999843097651726	0	lncRNA	27812-1_{1..884}	lnc-NKX6-3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKX6-3-2:2	chr8	 41401475	 41402358	-	lnc-NKX6-3-2	lnc-NKX6-3-2:2	ENSG00000253174.2	RP11-360L9.7	GINS4	"hg19_refFlat_GINS4:range=chr8:41387722-413996065'pad=0,hg19_refFlat_GINS4:range=chr8:41387722-413996065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70chr8:41391475-41402565"	NA	inner
CUST_37913_PI429285431	0.8934284	A	1.1998285	A	0.808657053866977	0	lncRNA	39002-1_{1..1802}	n346453|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2003|NULL|-1.3121600|-0.2473648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346453|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2003|NULL|-1.3121600|-0.2473648	chr7	106415487	106417288	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7887_PI429285431	7.491023	P	7.581797	P	0.939018834280661	0	lncRNA	9504-1_{1..1417}	lnc-AC135050.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC135050.1-2:1	chr16	 31053463	 31054879	+	lnc-AC135050.1-2	lnc-AC135050.1-2:1	ENSG00000249093	AC135050.2	STX4	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60chr16:31044903-31051485"	NA	inter
CUST_4329_PI429285431	0.8861891	A	0.90294963	A	0.988449708630683	0	lncRNA	4284-1_{1..433}	"transcript_id ""ENST00000549527.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549527.1"" | genecode_v17"	chr12	 79734985	 79735417	-	ENSG00000257894.1	ENST00000549527.1	RP1-78O14.1	RP1-78O14.1-001	SYT1	NA	chr12:79724985-79845788	inner
CUST_6243_PI429285431	0.907029	A	0.92171675	A	0.989870876140134	0	lncRNA	6168-1_{1..440}	"transcript_id ""ENST00000580622.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580622.1"" | genecode_v17"	chr18	 65608186	 65608625	+	ENSG00000264634.1	ENST00000580622.1	RP11-659F24.1	RP11-659F24.1-001	NA	NA	NA	inter
CUST_41862_PI429285431	2.44294	A	2.5808172	A	0.908855473547003	0	lncRNA	43518-1_{1..87}	ENST00000384966 ncrna:miRNA chromosome:GRCh37:19:54242587:54242673:1 gene:ENSG00000207699 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384966 ncrna:miRNA chromosome:GRCh37:19:54242587:54242673:1 gene:ENSG00000207699 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54242587	 54242673	+	ENSG00000207699	ENST00000384966	NA	NA	NA	NA	NA	inter
CUST_16272_PI429285431	3.2057357	P	3.5360203	P	0.795379563999568	0	lncRNA	17977-1_{1..490}	lnc-ZNF572-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF572-1:14	chr8	125963058	125963547	+	lnc-ZNF572-1	lnc-ZNF572-1:14	XLOC_006916	linc-ZNF572	NA	NA	NA	inter
CUST_28186_PI429285431	7.031388	P	7.071804	P	0.972374523541897	0	lncRNA	29813-1_{1..468}	n325466|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322563|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322563|-0.5673080|-0.2186578	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325466|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322563|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322563|-0.5673080|-0.2186578	chr2	  5660087	  5660554	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_52172_PI429285431	0.89789957	A	0.90549743	A	0.994747408120388	0	lncRNA	55693-1_{1..476}	hg19_lincRNAsTranscripts_TCONS_l2_00018371 range=chr22:24396360-24401855 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018371 range=chr22:24396360-24401855 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 24396360	 24396835	-	NA	NA	NA	NA	CABIN1	NA	chr22:24407765-24411855	inter
LNCA_33_P3239744	5.150192	P	4.6217146	P	1.44240609688289	0	lncRNA	ENST00000433071	XR_109661	XR_109661	NA	Hs.708976	NA	NA	ENST00000433071	THC2610508	NA	"PREDICTED: Homo sapiens hypothetical LOC150051 (LOC150051), miscRNA [XR_109661]"	chr21:32932572-32932631	hs|21q22.11	Agilent_HUMAN_G3V2	ENST00000433071	ENST00000433071	chr21	 32932572	 32932631	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40627_PI429285431	8.640555	P	8.444504	P	1.14555839333308	0	lncRNA	41368-1_{1..1354}	n410119|NR_036552|lncRNA|Homosapiens||RefGeneNoncode|NR_036552||7.1540000|-0.2302796	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410119|NR_036552|lncRNA|Homosapiens||RefGeneNoncode|NR_036552||7.1540000|-0.2302796	chr21	 33973983	 33975336	-	NA	NA	NA	NA	C21orf59	NA	chr21:33973984-33984918	inner
LNCA_21_P0009886	3.4794898	P	3.8510056	P	0.772969931728346	0	lncRNA	ENST00000417696	NA	NA	NA	NA	XLOC_013674	NA	ENST00000417696	NA	NA	"BROAD Institute lincRNA (XLOC_013674), lincRNA [TCONS_00028013]"	chr20:20702420-20702361	hs|20p11.23	Agilent_HUMAN_G3V2	ENST00000417696	ENST00000417696	chr20	 20702361	 20702420	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27632_PI429285431	1.4872015	A	1.6005108	A	0.924465060411169	0	lncRNA	29210-1_{1..607}	n324836|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000157551|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000157551|-0.9048880|-0.3799281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324836|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000157551|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000157551|-0.9048880|-0.3799281	chr21	 28307552	 28308158	+	NA	NA	NA	NA	ADAMTS5	NA	chr21:28297552-28327423	inner
LNCA_21_P0006299	0.9091959	A	0.92573625	A	0.988600574516459	0	lncRNA	TCONS_00016434	NA	NA	NA	NA	XLOC_007800	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007800), lincRNA [TCONS_00016434]"	chr9:100638701-100638642	hs|9q22.33	Agilent_HUMAN_G3V2	TCONS_00016434	TCONS_00016434	chr9	100638642	100638701	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34682_PI429285431	0.9022589	A	1.0406451	A	0.908534875065816	0	lncRNA	36134-1_{1..574}	n341587|AF085868|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4058|NULL|-1.1292100|-0.5510744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341587|AF085868|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4058|NULL|-1.1292100|-0.5510744	chr8	116580683	116581256	-	NA	NA	NA	NA	TRPS1	NA	chr8:116570683-116591247	inner
CUST_12454_PI429285431	3.5928798	P	3.7136524	P	0.919694998588054	0	lncRNA	14066-1_{1..204}	lnc-SLC30A10-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC30A10-5:1	chr1	219164613	219164816	-	lnc-SLC30A10-5	lnc-SLC30A10-5:1	XLOC_001205	linc-GPATCH2-3	NA	NA	NA	inter
CUST_24737_PI429285431	3.548897	P	3.8287764	P	0.823659867042093	0	lncRNA	26282-1_{1..1540}	lnc-MTRNR2L3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-MTRNR2L3-1:1	chr20	 55967335	 55968874	-	lnc-MTRNR2L3-1	lnc-MTRNR2L3-1:1	ENSG00000218018.2	RP4-800J21.3	RBM38	"hg19_refFlat_RBM38:range=chr20:55966638-559829025'pad=0,hg19_refFlat_RBM38:range=chr20:55966638-559829025'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.70;hg19_refFlat_RBM38:range=chr20:55966638-559826035'pad=0,hg19_refFlat_RBM38:range=chr20:55966638-559826035'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-20.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40chr20:55966454-55978118"	NA	inner
CUST_51997_PI429285431	1.7510613	A	1.1686271	A	1.4973735752818	0	lncRNA	55532-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00017125 range=chr21:10186569-10215575 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017125 range=chr21:10186569-10215575 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 10192569	 10195568	-	NA	NA	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.74;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80"	NA	inter
CUST_28657_PI429285431	3.3099592	P	3.0043712	P	1.23592225999462	0	lncRNA	30348-1_{1..1787}	n326035|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047292|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047292|-0.0928152|-0.3579521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326035|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047292|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047292|-0.0928152|-0.3579521	chr10	 27260140	 27261926	-	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.70;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20"	NA	inter
CUST_568_PI429285431	1.572882	A	0.9227902	A	1.56926804657235	0	lncRNA	560-1_{1..215}	"transcript_id ""ENST00000420347.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420347.1"" | genecode_v17"	chr1	218205177	218205391	+	ENSG00000230714.1	ENST00000420347.1	RP11-152L7.1	RP11-152L7.1-001	NA	NA	NA	inter
CUST_38783_PI429285431	7.6850486	P	6.490638	P	2.2885131788443	0	lncRNA	39776-1_{1..1927}	n384435|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003gsd.2||-1.2533400|-0.3467799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384435|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003gsd.2||-1.2533400|-0.3467799	chr4	 26434614	 26436540	+	NA	NA	NA	NA	RBPJ	NA	chr4:26424614-26433278	inner
CUST_34037_PI429285431	0.91277224	A	0.9055712	A	1.00500385826478	0	lncRNA	35569-1_{1..859}	n340854|BC062771|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3318|NULL|1.3011400|-0.1914663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340854|BC062771|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3318|NULL|1.3011400|-0.1914663	chr17	 73642645	 73643503	+	NA	NA	NA	NA	RECQL5	NA	chr17:73632645-73654053	inner
CUST_662_PI429285431	5.605896	P	6.105571	P	0.707266091078283	0	lncRNA	655-1_{1..1479}	"transcript_id ""ENST00000586530.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586530.1"" | genecode_v17"	chr2	  4005926	  4007404	-	ENSG00000237401.2	ENST00000586530.1	AC107070.1	AC107070.1-006	NA	NA	NA	inter
CUST_2262_PI429285431	1.329165	A	0.88325584	A	1.36217226209637	0	lncRNA	2254-1_{1..572}	"transcript_id ""ENST00000513812.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513812.1"" | genecode_v17"	chr5	 92005577	 92006148	+	ENSG00000249169.1	ENST00000513812.1	CTC-529L17.1	CTC-529L17.1-001	NA	NA	NA	inter
CUST_49303_PI429285431	1.1332302	A	0.89906824	A	1.17622328819622	0	lncRNA	53121-1_{1..287}	hg19_lincRNAsTranscripts_TCONS_l2_00022219 range=chr5:17852729-17878230 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022219 range=chr5:17852729-17878230 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 17852729	 17853015	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10674_PI429285431	0.9207508	A	0.9264498	A	0.996057546175432	0	lncRNA	12207-1_{1..301}	lnc-TLR4-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TLR4-4:2	chr9	120639093	120639393	+	lnc-TLR4-4	lnc-TLR4-4:2	XLOC_007538	linc-CEP110-13	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20"	NA	inter
CUST_16808_PI429285431	1.2054778	A	0.8947607	A	1.24032405706434	0	lncRNA	18514-1_{1..467}	lnc-P2RY1-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-P2RY1-3:6	chr3	152395950	152396416	+	lnc-P2RY1-3	lnc-P2RY1-3:6	XLOC_002878	linc-P2RY1-2	NA	NA	NA	inter
CUST_6326_PI429285431	2.9437811	P	3.4558363	P	0.701222794814618	0	lncRNA	6249-1_{1..667}	"transcript_id ""ENST00000597156.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597156.1"" | genecode_v17"	chr19	  7935447	  7936113	+	ENSG00000268120.1	ENST00000597156.1	CTD-3193O13.11	CTD-3193O13.11-001	EVI5L	"hg19_refFlat_FLJ22184:range=chr19:7933919-79385745'pad=0,hg19_refFlat_FLJ22184:range=chr19:7933919-79385745'pad=0 3'pad=0 strand=- repeatMasking=none,-103.60chr19:7925447-7929862"	NA	inner
CUST_3993_PI429285431	1.3244838	A	1.188514	A	1.09883121545301	0	lncRNA	3953-2_{3001..3387}	"transcript_id ""ENST00000511677.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511677.1"" | genecode_v17"	chr11	 67656967	 67657353	+	ENSG00000251637.2	ENST00000511677.1	RP11-119D9.1	RP11-119D9.1-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90"	NA	inter
CUST_2457_PI429285431	3.995879	P	4.359621	P	0.777146234952065	0	lncRNA	2449-1_{1..683}	"transcript_id ""ENST00000604669.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604669.1"" | genecode_v17"	chr5	180743326	180744008	+	ENSG00000238035.4	ENST00000604669.1	AC138035.2	AC138035.2-002	LOC100286914	NA	chr5:180755977-180758817	inter
LNCA_21_P0013751	4.4230204	P	4.2710195	P	1.111109421801	0	lncRNA	TCONS_l2_00030126	NA	NA	NA	NA	XLOC_l2_015441	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015441), lincRNA [TCONS_l2_00030126]"	chrX:2544642-2576561	hs|Xp22.33	Agilent_HUMAN_G3V2	TCONS_l2_00030126	TCONS_l2_00030126	chrX	  2544642	  2576561	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1288_PI429285431	1.4014822	A	1.6863395	A	0.820822794103809	0	lncRNA	1278-1_{1..610}	"transcript_id ""ENST00000451031.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451031.1"" | genecode_v17"	chr3	  3302491	  3303100	-	ENSG00000223727.2	ENST00000451031.1	AC026188.1	AC026188.1-003	NA	NA	NA	inter
CUST_46414_PI429285431	2.6151907	A	2.7792132	A	0.892533051587145	0	lncRNA	50628-1_{1..3000}	"gi|301601679|ref|NR_036432.1| Homo sapiens hect domain and RLD 2 pseudogene 3 (HERC2P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301601679|ref|NR_036432.1| Homo sapiens hect domain and RLD 2 pseudogene 3 (HERC2P3), non-coding RNA"	Chr15	 20613649	 20616648	-	283755	NR_036432.1	NA	NA	NA	NA	NA	inter
CUST_22766_PI429285431	4.6074805	P	5.003365	P	0.760023272087828	0	lncRNA	24348-1_{1..464}	lnc-MAP3K9-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP3K9-3:7	chr14	 71777929	 71778392	-	lnc-MAP3K9-3	lnc-MAP3K9-3:7	ENSG00000259146.1	RP1-261D10.2	NA	NA	NA	inter
CUST_7733_PI429285431	2.4313884	A	3.4177887	P	0.504735581992248	0	lncRNA	9363-2_{3001..6000}	lnc-PDCD7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDCD7-1:1	chr15	 65389813	 65392812	-	lnc-PDCD7-1	lnc-PDCD7-1:1	ENSG00000246922	ENST00000502113	LOC390595	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr15:65385342-65398697"	NA	inner
CUST_35192_PI429285431	1.2319508	A	1.0167354	A	1.16087722494566	0	lncRNA	36593-1_{1..1707}	n342176|BC071615|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4663|NULL|-0.2293250|-0.2179161	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342176|BC071615|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4663|NULL|-0.2293250|-0.2179161	chr6	166796676	166798382	+	NA	NA	NA	NA	BRP44L	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90chr6:166786676-166796486"	NA	inter
CUST_3628_PI429285431	0.89268875	A	0.9034555	A	0.992564836202047	0	lncRNA	3598-1_{1..548}	"transcript_id ""ENST00000427232.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427232.1"" | genecode_v17"	chr10	 19035362	 19035909	+	ENSG00000234244.1	ENST00000427232.1	RP11-139J15.5	RP11-139J15.5-001	NA	NA	NA	inter
CUST_1376_PI429285431	1.2997916	A	1.2565664	A	1.03041478546116	0	lncRNA	1364-1_{1..502}	"transcript_id ""ENST00000469218.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000469218.1"" | genecode_v17"	chr3	 72109948	 72110449	-	ENSG00000241163.2	ENST00000469218.1	RP11-398A8.3	RP11-398A8.3-007	NA	NA	NA	inter
CUST_3799_PI429285431	3.8523362	P	4.302231	P	0.732096229812546	0	lncRNA	3767-1_{1..612}	"transcript_id ""ENST00000596000.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596000.1"" | genecode_v17"	chr10	109760769	109761380	-	ENSG00000229981.2	ENST00000596000.1	RP11-215N21.1	RP11-215N21.1-004	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-19.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20"	NA	inter
CUST_18789_PI429285431	0.8927157	A	1.2938176	A	0.75727966810088	0	lncRNA	20485-1_{1..238}	lnc-ADAMTS19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ADAMTS19-1:1	chr5	129096071	129096308	+	lnc-ADAMTS19-1	lnc-ADAMTS19-1:1	ENSG00000186367	KIAA1024L	NA	NA	NA	inner
LNCA_21_P0011287	2.903648	A	2.4471805	A	1.37217786572473	0	lncRNA	TCONS_l2_00008403	NA	NA	NA	NA	XLOC_l2_004556	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004556), lincRNA [TCONS_l2_00008403]"	chr15:21148397-21148456	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00008403	TCONS_l2_00008403	chr15	 21148397	 21148456	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13038_PI429285431	1.7948635	A	2.2514174	A	0.728724853281841	0	lncRNA	14663-1_{1..464}	lnc-IDH3B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IDH3B-1:1	chr20	  2672712	  2673175	-	lnc-IDH3B-1	lnc-IDH3B-1:1	XLOC_013631	linc-IDH3B-1	EBF4	NA	chr20:2673524-2683011	inter
CUST_2157_PI429285431	0.90259653	A	0.9099276	A	0.994931378532337	0	lncRNA	2148-1_{1..1003}	"transcript_id ""ENST00000504552.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504552.1"" | genecode_v17"	chr5	 53072474	 53073476	-	ENSG00000250447.1	ENST00000504552.1	CTD-2081C10.1	CTD-2081C10.1-001	NA	NA	NA	inter
CUST_51108_PI429285431	4.758701	P	4.424352	P	1.26080835478389	0	lncRNA	54746-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00007295 range=chr13:97591376-97601835 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007295 range=chr13:97591376-97601835 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 97591376	 97594375	-	NA	NA	NA	NA	OXGR1	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chr13:97598849-97611835"	NA	inter
LNCA_21_P0014273	9.547903	P	9.643024	P	0.936193724816722	0	lncRNA	ENST00000532805	XR_109070	XR_109070	NA	Hs.371427	CYP2R1	"cytochrome P450, family 2, subfamily R, polypeptide 1"	ENST00000532805	THC2561588	GO:0005792|GO:0006805|GO:0030343|GO:0042359|GO:0005783|GO:0010164|GO:0009055|GO:0046872|GO:0004497|GO:0016020|GO:0006766|GO:0047749|GO:0010212|GO:0005789|GO:0016705|GO:0008202|GO:0020037	"PREDICTED: Homo sapiens hypothetical LOC100506367 (LOC100506367), miscRNA [XR_109070]"	chr11:14907947-14907888	hs|11p15.2	Agilent_HUMAN_G3V2	ENST00000532805	ENST00000532805	chr11	 14907888	 14907947	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1643_PI429285431	2.8306806	A	3.6249197	P	0.576647226005737	0	lncRNA	1628-1_{1..314}	"transcript_id ""ENST00000451216.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451216.2"" | genecode_v17"	chr3	195428510	195428823	+	ENSG00000242086.3	ENST00000451216.2	AC069513.3	AC069513.3-004	NA	NA	NA	inter
CUST_32270_PI429285431	0.8917729	A	1.0933844	A	0.869578695392884	0	lncRNA	33958-1_{1..1837}	n338848|AK057425|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1271|NULL|0.1844350|-0.2257791	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338848|AK057425|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1271|NULL|0.1844350|-0.2257791	chr12	  5578417	  5580253	+	NA	NA	NA	NA	NTF3	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80chr12:5568417-5590254"	NA	inner
CUST_39758_PI429285431	2.0291204	A	1.6231447	A	1.32498469950862	0	lncRNA	40679-3_{6001..9000}	n405913|NR_003149|lncRNA|Homosapiens||RefGeneNoncode|NR_003149||40.8024000|-0.2615927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405913|NR_003149|lncRNA|Homosapiens||RefGeneNoncode|NR_003149||40.8024000|-0.2615927	chr5	 89860616	 89863615	+	NA	NA	NA	NA	GPR98	NA	chr5:89854617-90460033	inner
CUST_2906_PI429285431	1.3311968	A	0.87771344	A	1.36934252024428	0	lncRNA	2887-1_{1..547}	"transcript_id ""ENST00000447785.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447785.1"" | genecode_v17"	chr7	112613674	112614220	-	ENSG00000234520.1	ENST00000447785.1	AC018464.3	AC018464.3-002	NA	NA	NA	inter
CUST_34530_PI429285431	5.955477	P	6.47666	P	0.696800227462084	0	lncRNA	35992-1_{1..2626}	n341409|AK096660|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3879|NULL|5.7213900|-0.1436085	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341409|AK096660|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3879|NULL|5.7213900|-0.1436085	chr8	 10281417	 10284042	-	NA	NA	NA	NA	MSRA	NA	chr8:10271417-10286401	inner
CUST_25548_PI429285431	0.8812876	A	0.88042057	A	1.00060116002426	0	lncRNA	27078-1_{1..3000}	lnc-IRF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IRF1-1:1	chr5	131808295	131811294	-	lnc-IRF1-1	lnc-IRF1-1:1	ENSG00000234290.1	AC116366.6	C5orf56	NA	chr5:131798295-131818735	inter
LNCA_21_P0001810	0.8858925	A	0.8854676	A	1.00029456161177	0	lncRNA	TCONS_00002796	NA	NA	NA	NA	XLOC_001315	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001315), lincRNA [TCONS_00002796]"	chr2:1584010-1584069	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00002796	TCONS_00002796	chr2	  1584010	  1584069	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010461	4.7388954	P	4.914372	P	0.885474950635195	0	lncRNA	TCONS_00029762	NA	NA	NA	NA	XLOC_014159	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014159), lincRNA [TCONS_00029762]"	chr22:20852992-20853051	hs|22q11.21	Agilent_HUMAN_G3V2	TCONS_00029762	TCONS_00029762	chr22	 20852992	 20853051	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002796	0.88637173	A	0.8856017	A	1.00053388659019	0	lncRNA	ENST00000490897	NA	NA	NA	NA	XLOC_002909	NA	ENST00000490897	THC2688957	NA	"BROAD Institute lincRNA (XLOC_002909), lincRNA [TCONS_00005648]"	chr3:167632341-167632400	hs|3q26.2	Agilent_HUMAN_G3V2	ENST00000490897	ENST00000490897	chr3	167632341	167632400	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010051	5.1594024	P	5.368213	P	0.865250274981385	0	lncRNA	TCONS_00028426	NA	NA	NA	NA	XLOC_013778	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013778), lincRNA [TCONS_00028426]"	chr20:47100479-47100420	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028426	TCONS_00028426	chr20	 47100420	 47100479	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35440_PI429285431	3.0133855	P	3.080098	P	0.954811269794674	0	lncRNA	36846-1_{1..3000}	n342506|AK095655|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5000|NULL|-0.8458420|-0.1409384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n342506|AK095655|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5000|NULL|-0.8458420|-0.1409384	chr3	 75716699	 75719698	-	NA	NA	NA	NA	FRG2C	NA	chr3:75706699-75716368	inter
CUST_4661_PI429285431	0.88448256	M	0.8747905	A	1.00674064060426	0	lncRNA	4607-1_{1..601}	"transcript_id ""ENST00000433074.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433074.1"" | genecode_v17"	chr13	 85639222	 85639822	-	ENSG00000226370.1	ENST00000433074.1	RP11-531P20.1	RP11-531P20.1-001	NA	NA	NA	inter
CUST_361_PI429285431	3.7464647	P	3.9750366	P	0.853479318842343	0	lncRNA	353-1_{1..587}	"transcript_id ""ENST00000456651.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456651.1"" | genecode_v17"	chr1	113392650	113393236	+	ENSG00000224167.1	ENST00000456651.1	RP3-522D1.1	RP3-522D1.1-002	NA	NA	NA	inter
CUST_17193_PI429285431	0.88239485	A	0.8830797	A	0.999525410806489	0	lncRNA	18905-1_{1..246}	lnc-NEURL1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NEURL1B-1:1	chr5	172055511	172055756	+	lnc-NEURL1B-1	lnc-NEURL1B-1:1	XLOC_004633	linc-NEURL1B-1	NA	NA	NA	inter
CUST_19884_PI429285431	0.90824354	A	0.9135517	A	0.996327424325366	0	lncRNA	21540-1_{1..701}	lnc-AP000783.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP000783.1.1-2:1	chr11	123098696	123099396	+	lnc-AP000783.1.1-2	lnc-AP000783.1.1-2:1	ENSG00000254710.1	CTD-2216M2.1	NA	NA	NA	inter
CUST_22904_PI429285431	0.8945201	A	0.89657116	A	0.998579323661284	0	lncRNA	24481-1_{1..717}	lnc-C21orf91-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C21orf91-1:1	chr21	 19164794	 19165510	-	lnc-C21orf91-1	lnc-C21orf91-1:1	ENSG00000240770.1	C21orf91-OT1	C21orf91	NA	chr21:19161284-19174840	inner
CUST_13149_PI429285431	3.3142164	P	3.3549619	P	0.97215246634262	0	lncRNA	14776-1_{1..212}	lnc-C9orf82-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf82-1:1	chr9	 26718906	 26719117	-	lnc-C9orf82-1	lnc-C9orf82-1:1	XLOC_007661	linc-TUSC1	NA	NA	NA	inter
CUST_40065_PI429285431	1.5093215	A	1.4803841	A	1.0202603881557	0	lncRNA	40917-1_{1..2430}	n407283|NR_026751_7|lncRNA|Homosapiens||RefGeneNoncode|NR_026751_7||0.2471340|-0.2356256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407283|NR_026751_7|lncRNA|Homosapiens||RefGeneNoncode|NR_026751_7||0.2471340|-0.2356256	chr6	  1480504	  1482933	-	NA	NA	NA	NA	NA	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10"	NA	inter
LNCA_21_P0002285	0.8909073	A	0.88971406	A	1.00082743307576	0	lncRNA	TCONS_00003845	NA	NA	NA	NA	XLOC_001650	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001650), lincRNA [TCONS_00003845]"	chr2:123262688-123262747	hs|2q14.3	Agilent_HUMAN_G3V2	TCONS_00003845	TCONS_00003845	chr2	123262688	123262747	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11380_PI429285431	7.5764217	P	8.171377	P	0.662064968088344	0	lncRNA	12945-1_{1..462}	lnc-HEATR6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HEATR6-1:1	chr17	 58166404	 58166865	-	lnc-HEATR6-1	lnc-HEATR6-1:1	XLOC_012538	linc-HEATR6-2	NA	NA	NA	inter
CUST_29281_PI429285431	0.8864932	A	1.267672	A	0.767809970643532	0	lncRNA	31032-1_{1..511}	n332391|AM990326|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500210|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500210|1.9900100|-0.2692478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332391|AM990326|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500210|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500210|1.9900100|-0.2692478	chr1	 67648590	 67649100	+	NA	NA	NA	NA	IL23R	NA	chr1:67638590-67725662	inner
CUST_30976_PI429285431	1.347743	A	1.0319833	A	1.24466690232943	0	lncRNA	32764-1_{1..788}	n337128|AB199053|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383637|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383637|2.8329200|-0.3052757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337128|AB199053|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383637|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383637|2.8329200|-0.3052757	chr12	 10958711	 10959498	-	NA	NA	NA	NA	TAS2R9	NA	chr12:10961693-10962767	inner
CUST_18034_PI429285431	0.8950567	A	0.89323103	A	1.00126625904298	0	lncRNA	19769-1_{1..1829}	lnc-UQCRFS1-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UQCRFS1-9:1	chr19	 28284440	 28286268	-	lnc-UQCRFS1-9	lnc-UQCRFS1-9:1	XLOC_013282	linc-ZNF681-4	NA	NA	NA	inter
CUST_13971_PI429285431	7.843813	P	8.26812	P	0.745196601532729	0	lncRNA	15616-1_{1..945}	lnc-BCL11B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BCL11B-1:3	chr14	 99753611	 99754555	-	lnc-BCL11B-1	lnc-BCL11B-1:3	XLOC_011119	linc-BCL11B	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.31;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0,hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10"	NA	inter
CUST_15495_PI429285431	0.92413145	A	0.91218865	A	1.00831247651012	0	lncRNA	17184-1_{1..956}	lnc-ST8SIA4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ST8SIA4-1:1	chr5	100366878	100367833	-	lnc-ST8SIA4-1	lnc-ST8SIA4-1:1	XLOC_004940	linc-ST8SIA4	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10"	NA	inter
CUST_43044_PI429285431	3.264862	P	3.4632819	P	0.871504549041493	0	lncRNA	46704-1_{1..101}	ENST00000516382 ncrna:snRNA chromosome:GRCh37:19:54253105:54253205:-1 gene:ENSG00000252191 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516382 ncrna:snRNA chromosome:GRCh37:19:54253105:54253205:-1 gene:ENSG00000252191 gene_biotype:snRNA transcript_biotype:snRNA	chr19	 54253105	 54253205	-	ENSG00000252191	ENST00000516382	NA	NA	NA	NA	NA	inter
CUST_27545_PI429285431	0.91901165	A	0.9262867	A	0.994970012572365	0	lncRNA	29120-1_{1..853}	n324731|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322210|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322210|-0.7067910|-0.0690678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324731|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322210|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322210|-0.7067910|-0.0690678	chr22	 18757668	 18758520	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011685	0.8950131	A	2.4008675	A	0.352121591830948	0	lncRNA	TCONS_l2_00012420	NA	NA	NA	NA	XLOC_l2_006665	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006665), lincRNA [TCONS_l2_00012420]"	chr19:23330166-23330225	hs|19p12	Agilent_HUMAN_G3V2	TCONS_l2_00012420	TCONS_l2_00012420	chr19	 23330166	 23330225	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14238_PI429285431	1.1263368	A	1.5299501	A	0.755962565221416	0	lncRNA	15896-1_{1..1612}	lnc-QSOX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-QSOX2-1:1	chr9	139166729	139168340	-	lnc-QSOX2-1	lnc-QSOX2-1:1	XLOC_007895	linc-QSOX2	NA	NA	NA	inter
CUST_35512_PI429285431	2.9223738	P	0.9126461	A	4.02706204478472	0	lncRNA	36919-1_{1..948}	n342615|CR591422|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5116|NULL|-0.8702780|-0.2585519	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342615|CR591422|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5116|NULL|-0.8702780|-0.2585519	chr4	110632253	110633200	-	NA	NA	NA	NA	PLA2G12A	NA	chr4:110631145-110643201	inner
CUST_48410_PI429285431	1.6337531	A	1.0686483	A	1.47949497856002	0	lncRNA	52263-1_{1..798}	hg19_lincRNAsTranscripts_TCONS_l2_00001501 range=chr1:143719893-143744935 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001501 range=chr1:143719893-143744935 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	143719893	143720690	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM91A1:range=chr8:124780943-1248249445'pad=0,hg19_refFlat_FAM91A1:range=chr8:124780943-1248249445'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00"	NA	inter
CUST_45684_PI429285431	0.9069432	A	1.0543959	A	0.902843164593032	0	lncRNA	50057-2_{3001..3184}	"gi|223972641|ref|NR_026940.1| Homo sapiens cancer susceptibility candidate 2 (non-protein coding) (CASC2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223972641|ref|NR_026940.1| Homo sapiens cancer susceptibility candidate 2 (non-protein coding) (CASC2), transcript variant 2, non-coding RNA"	Chr10	119809332	119809515	+	255082	NR_026940.1	NA	NA	NA	NA	NA	inter
CUST_41772_PI429285431	1.4097152	A	1.1105293	A	1.23044988546179	0	lncRNA	43335-1_{1..110}	ENST00000385200 ncrna:miRNA chromosome:GRCh37:9:73424891:73425000:-1 gene:ENSG00000207935 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385200 ncrna:miRNA chromosome:GRCh37:9:73424891:73425000:-1 gene:ENSG00000207935 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 73424891	 73425000	-	ENSG00000207935	ENST00000385200	NA	NA	TRPM3	NA	chr9:73414891-73435000	inner
CUST_2399_PI429285431	1.508871	A	0.89956224	A	1.52552810593345	0	lncRNA	2391-1_{1..596}	"transcript_id ""ENST00000503048.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503048.1"" | genecode_v17"	chr5	152000065	152000660	-	ENSG00000249484.4	ENST00000503048.1	AC091969.1	AC091969.1-001	NA	NA	NA	inter
CUST_25397_PI429285431	4.2314677	P	4.090447	P	1.10268498444126	0	lncRNA	26928-1_{1..562}	lnc-ASH2L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASH2L-1:1	chr8	 38020828	 38021389	+	lnc-ASH2L-1	lnc-ASH2L-1:1	ENSG00000253356.1	RP11-90P5.2	LSM1	"hg19_refFlat_LSM1:range=chr8:38021188-380338385'pad=0,hg19_refFlat_LSM1:range=chr8:38021188-380338385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30chr8:38020857-38031290"	NA	inter
LNCA_21_P0005792	1.2255077	A	0.92316484	A	1.23314535064768	0	lncRNA	TCONS_00014918	NA	NA	NA	NA	XLOC_006984	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006984), lincRNA [TCONS_00014918]"	chr8:5916651-5916592	hs|8p23.2	Agilent_HUMAN_G3V2	TCONS_00014918	TCONS_00014918	chr8	  5916592	  5916651	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52112_PI429285431	4.110588	P	4.758701	P	0.638114401743616	0	lncRNA	55637-1_{1..268}	hg19_lincRNAsTranscripts_TCONS_l2_00018314 range=chr22:18782111-18812514 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018314 range=chr22:18782111-18812514 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 18782111	 18782378	-	NA	NA	NA	NA	LOC100132900	NA	chr22:18781949-18822514	inter
CUST_15430_PI429285431	2.030751	A	2.950245	A	0.52869441806718	0	lncRNA	17117-1_{1..409}	lnc-REG3G-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-REG3G-3:2	chr2	 78322790	 78323198	+	lnc-REG3G-3	lnc-REG3G-3:2	XLOC_001543	linc-REG3G-2	NA	NA	NA	inter
CUST_36761_PI429285431	2.97252	A	3.955609	P	0.505895390814031	0	lncRNA	37934-1_{1..804}	n345241|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_790|NULL|-1.3262100|-0.1395890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345241|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_790|NULL|-1.3262100|-0.1395890	chr13	114630976	114631779	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8202_PI429285431	0.92027503	A	1.5420275	A	0.649881024818615	0	lncRNA	9798-1_{1..3000}	lnc-SIAH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SIAH1-1:1	chr16	 48384248	 48387247	-	lnc-SIAH1-1	lnc-SIAH1-1:1	ENSG00000247487	ENST00000501305	LONP2	"hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_LONP2:range=chr16:48278300-483857135'pad=0,hg19_refFlat_LONP2:range=chr16:48278300-483857135'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40chr16:48374248-48387407"	NA	inner
CUST_22881_PI429285431	2.0386345	A	1.8401151	A	1.14752008078756	0	lncRNA	24457-1_{1..912}	lnc-EPS8L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EPS8L2-1:1	chr11	   678323	   679234	+	lnc-EPS8L2-1	lnc-EPS8L2-1:1	ENSG00000255158.1	RP11-754B17.1	DEAF1	NA	chr11:668323-688391	inner
CUST_27305_PI429285431	0.90847945	A	1.1386863	A	0.852512651877057	0	lncRNA	28863-1_{1..305}	n324457|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041466|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041466|-0.8473290|-0.2312181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324457|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041466|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041466|-0.8473290|-0.2312181	chr6	 89065387	 89065691	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32703_PI429285431	0.91030824	A	1.4426414	A	0.691435623589444	0	lncRNA	34347-1_{1..1632}	n339334|AL137382|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1766|NULL|1.3376900|-0.0938425	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n339334|AL137382|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1766|NULL|1.3376900|-0.0938425	chr16	 89262168	 89263799	-	NA	NA	NA	NA	CDH15	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50chr16:89252168-89261900"	NA	inner
CUST_14246_PI429285431	3.2053823	P	2.9360974	A	1.20521029357082	0	lncRNA	15905-1_{1..620}	lnc-SHOX-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SHOX-1:1	chrX	   420193	   420812	+	lnc-SHOX-1	lnc-SHOX-1:1	XLOC_007910	linc-SHOX-1	NA	NA	NA	inter
CUST_7367_PI429285431	0.97391987	A	0.90049326	A	1.05221287625529	0	lncRNA	9013-1_{1..3000}	lnc-ZFC3H1-6:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZFC3H1-6:6	chr12	 72647288	 72650287	-	lnc-ZFC3H1-6	lnc-ZFC3H1-6:6	ENSG00000236333	AC087886.1	NA	NA	NA	inter
CUST_3432_PI429285431	0.88626456	A	1.247422	A	0.778539725092248	0	lncRNA	3403-1_{1..361}	"transcript_id ""ENST00000427901.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427901.1"" | genecode_v17"	chr9	 74872252	 74872612	+	ENSG00000235523.1	ENST00000427901.1	RP11-63P12.7	RP11-63P12.7-001	GDA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40chr9:74862252-74867140"	NA	inter
CUST_12693_PI429285431	1.4914002	A	2.8195035	A	0.398291528610419	0	lncRNA	14311-1_{1..1669}	lnc-MBOAT1-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBOAT1-3:7	chr6	 19733636	 19735304	-	lnc-MBOAT1-3	lnc-MBOAT1-3:7	XLOC_005633	linc-DEK-3	NA	NA	NA	inter
CUST_70_PI429201921	0.92222315	A	1.723976	A	0.57365177674227	0	lncRNA	72-1_{1..2027}	TC11003154.hg.1	TCONS_l2_00004999-XLOC_l2_002647 // Broad TUCP // linc-OR4C45-2 chr11:-:49010696-49012724 // chr11 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr11:-:49010696-49012724	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00004999-XLOC_l2_002647	linc-OR4C45-2	chr11	 49010696	 49012724	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21645_PI429285431	1.6619766	A	1.9120004	A	0.840882543181629	0	lncRNA	23257-1_{1..295}	lnc-KIAA1267-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1267-3:3	chr17	 43922005	 43922299	-	lnc-KIAA1267-3	lnc-KIAA1267-3:3	ENSG00000264589.1	RP11-105N13.2	CRHR1	NA	chr17:43912005-43913194	inter
CUST_38920_PI429285431	2.9962938	A	3.3627818	P	0.775668435529125	0	lncRNA	39909-1_{1..1986}	n385013|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qer.1||0.0363115|-0.2557332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n385013|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qer.1||0.0363115|-0.2557332	chr6	134749385	134751370	-	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.64;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20"	NA	inter
CUST_36760_PI429285431	3.8686028	P	3.853208	P	1.01072799891727	0	lncRNA	37933-1_{1..1792}	n345240|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_789|NULL|-1.3171000|-0.1975620	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345240|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_789|NULL|-1.3171000|-0.1975620	chr13	112548719	112550510	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005439	1.7713604	A	0.91844577	A	1.80614614029522	0	lncRNA	TCONS_00013617	NA	NA	NA	NA	XLOC_006281	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006281), lincRNA [TCONS_00013617]"	chr7:144088043-144088102	hs|7q35	Agilent_HUMAN_G3V2	TCONS_00013617	TCONS_00013617	chr7	144088043	144088102	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31860_PI429285431	0.9107366	A	0.9047195	A	1.00417944552342	0	lncRNA	33593-1_{1..619}	n338411|AF075081|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|808|NULL|-1.0769600|-0.3420764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338411|AF075081|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|808|NULL|-1.0769600|-0.3420764	chr1	182807130	182807748	-	NA	NA	NA	NA	DHX9	NA	chr1:182808439-182817722	inter
CUST_7134_PI429285431	0.9200784	A	1.7197909	A	0.574463645101179	0	lncRNA	7070-1_{1..307}	"transcript_id ""ENST00000421353.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000421353.1"" | genecode_v17"	chrY	  6311475	  6311781	+	ENSG00000237563.1	ENST00000421353.1	TTTY21B	TTTY21B-001	NA	NA	NA	inter
CUST_26384_PI429285431	0.905901	A	0.96648115	A	0.95887844863109	0	lncRNA	27890-1_{1..876}	lnc-GJA10-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GJA10-2:2	chr6	 90662670	 90663545	+	lnc-GJA10-2	lnc-GJA10-2:2	ENSG00000226455.1	RP3-512E2.2	BACH2	"hg19_refFlat_BACH2:range=chr6:90642127-907185635'pad=0,hg19_refFlat_BACH2:range=chr6:90642127-907185635'pad=0 3'pad=0 strand=- repeatMasking=none,-103.00chr6:90652670-90672905"	NA	inner
CUST_3148_PI429285431	1.197352	A	1.468178	A	0.828844863457524	0	lncRNA	3127-1_{1..1762}	"transcript_id ""ENST00000521221.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521221.1"" | genecode_v17"	chr8	 64297397	 64299158	-	ENSG00000253205.1	ENST00000521221.1	CTD-3046C4.1	CTD-3046C4.1-001	NA	NA	NA	inter
CUST_42945_PI429285431	5.4068775	P	5.6978807	P	0.817333515582523	0	lncRNA	46065-1_{1..111}	ENST00000391145 ncrna:snoRNA chromosome:GRCh37:9:125642492:125642602:-1 gene:ENSG00000212447 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391145 ncrna:snoRNA chromosome:GRCh37:9:125642492:125642602:-1 gene:ENSG00000212447 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	125642492	125642602	-	ENSG00000212447	ENST00000391145	NA	NA	RC3H2	NA	chr9:125632492-125652602	inner
CUST_32764_PI429285431	0.9032718	A	0.91849965	A	0.989500368733312	0	lncRNA	34401-1_{1..1968}	n339402|BC031255|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1834|NULL|-1.0209400|-0.3200039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339402|BC031255|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1834|NULL|-1.0209400|-0.3200039	chr3	 82035288	 82037255	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009395	0.8985879	A	0.9065648	A	0.994486091958565	0	lncRNA	THC2634455	NA	NA	NA	NA	XLOC_012288	NA	NA	THC2634455	NA	"BROAD Institute lincRNA (XLOC_012288), lincRNA [TCONS_00025971]"	chr17:066183288-066183347	hs|17q24.2	Agilent_HUMAN_G3V2	THC2634455	THC2634455	chr17	 66183288	 66183347	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3400_PI429285431	5.8016295	P	5.7607923	P	1.02871061715136	0	lncRNA	3373-1_{1..789}	"transcript_id ""ENST00000586842.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586842.1"" | genecode_v17"	chr9	 42468743	 42469531	+	ENSG00000223839.3	ENST00000586842.1	FAM95B1	FAM95B1-006	CBWD7	NA	chr9:42478004-42480547	inter
CUST_18668_PI429285431	1.4404178	A	0.89947337	A	1.45492464149338	0	lncRNA	20370-1_{1..789}	lnc-TCL1B-1:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCL1B-1:15	chr14	 96142978	 96143766	+	lnc-TCL1B-1	lnc-TCL1B-1:15	ENSG00000187621	TCL6	TCL1B	NA	chr14:96152754-96153473	inter
LNCA_21_P0006912	0.8932772	A	0.89897925	A	0.996055440413495	0	lncRNA	TCONS_00018334	NA	NA	NA	NA	XLOC_008611	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008611), lincRNA [TCONS_00018334]"	chr10:112307227-112307286	hs|10q25.2	Agilent_HUMAN_G3V2	TCONS_00018334	TCONS_00018334	chr10	112307227	112307286	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008847	0.8923262	A	0.89764327	A	0.996321271084601	0	lncRNA	TCONS_00024119	NA	NA	NA	NA	XLOC_011471	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011471), lincRNA [TCONS_00024119]"	chr15:48279998-48279939	hs|15q21.1	Agilent_HUMAN_G3V2	TCONS_00024119	TCONS_00024119	chr15	 48279939	 48279998	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40270_PI429285431	1.8686979	A	2.2435675	A	0.771175113290287	0	lncRNA	41080-1_{1..999}	n408213|NR_028361|lncRNA|Homosapiens||RefGeneNoncode|NR_028361||3.7825400|-0.1153519	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408213|NR_028361|lncRNA|Homosapiens||RefGeneNoncode|NR_028361||3.7825400|-0.1153519	chr6	 33551475	 33552473	+	NA	NA	NA	NA	BAK1	NA	chr6:33541475-33548070	inter
CUST_46475_PI429285431	4.9355774	P	5.2513514	P	0.803419843632809	0	lncRNA	50673-1_{1..2874}	"gi|410170710|ref|XR_132593.3| PREDICTED: Homo sapiens uncharacterized FLJ38723 (FLJ38723), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170710|ref|XR_132593.3| PREDICTED: Homo sapiens uncharacterized FLJ38723 (FLJ38723), misc_RNA"	Chr15	 62534950	 62537823	-	255180	XR_132593.4	NA	NA	NA	NA	NA	inter
LNCA_21_P0001923	5.921091	P	6.462205	P	0.68724004077179	0	lncRNA	ENST00000450667	NA	NA	NA	NA	XLOC_001699	NA	ENST00000450667	NA	NA	"BROAD Institute lincRNA (XLOC_001699), lincRNA [TCONS_00003027]"	chr2:147606877-147607878	hs|2q22.3	Agilent_HUMAN_G3V2	ENST00000450667	ENST00000450667	chr2	147606877	147607878	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51473_PI429285431	2.0837271	A	2.191991	A	0.927703763947672	0	lncRNA	55048-1_{1..292}	hg19_lincRNAsTranscripts_TCONS_l2_00009699 range=chr16:33629698-33630084 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009699 range=chr16:33629698-33630084 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 33629698	 33629989	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3040_PI429285431	8.92871	P	8.981198	P	0.96427195880727	0	lncRNA	3019-1_{1..1633}	"transcript_id ""ENST00000519996.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519996.1"" | genecode_v17"	chr8	 21155750	 21157382	+	ENSG00000254334.1	ENST00000519996.1	RP11-24P4.1	RP11-24P4.1-001	NA	NA	NA	inter
CUST_34578_PI429285431	0.8845577	A	5.2758346	P	0.0476534045515819	0	lncRNA	36037-1_{1..3000}	n341462|S40832|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3932|NULL|2.3176100|-0.1444044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341462|S40832|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3932|NULL|2.3176100|-0.1444044	chr8	 22545237	 22548236	-	NA	NA	NA	NA	EGR3	NA	chr8:22545174-22550815	inner
CUST_15637_PI429285431	2.891565	A	2.6766527	A	1.16063335848902	0	lncRNA	17327-1_{1..414}	lnc-FGFBP3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGFBP3-1:3	chr10	 93556256	 93556669	-	lnc-FGFBP3-1	lnc-FGFBP3-1:3	XLOC_008905	linc-PPP1R3C	TNKS2	NA	chr10:93558151-93566347	inter
LNCA_21_P0014270	0.88643265	A	0.8880534	A	0.998877212505199	0	lncRNA	XR_109061	XR_109061	XR_109061	NA	Hs.434903	LOC100506238	uncharacterized LOC100506238	ENST00000534653	THC2656823	NA	"PREDICTED: Homo sapiens hypothetical LOC100506238 (LOC100506238), miscRNA [XR_109061]"	chr11:7251927-7251986	hs|11p15.4	Agilent_HUMAN_G3V2	XR_109061	XR_109061	chr11	  7251927	  7251986	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27142_PI429285431	0.90353	A	0.91414344	A	0.992670318092742	0	lncRNA	28678-1_{1..636}	n324258|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322895|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322895|-1.1650100|-0.1892935	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324258|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322895|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322895|-1.1650100|-0.1892935	chr7	  1745144	  1745779	-	NA	NA	NA	NA	ELFN1	NA	chr7:1748798-1758453	inter
CUST_33827_PI429285431	2.1609812	A	2.8391151	A	0.624973143338676	0	lncRNA	35375-1_{1..403}	n340613|AF075106|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3075|NULL|-1.1096400|-0.3780860	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340613|AF075106|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3075|NULL|-1.1096400|-0.3780860	chr5	130700967	130701369	-	NA	NA	NA	NA	CDC42SE2	NA	chr5:130690967-130711356	inner
CUST_7468_PI429285431	0.94566107	A	0.88638735	A	1.04194109591297	0	lncRNA	9111-1_{1..1550}	lnc-DLGAP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DLGAP1-2:1	chr18	  4248569	  4250118	-	lnc-DLGAP1-2	lnc-DLGAP1-2:1	ENSG00000250093	ENST00000515196	DLGAP1	NA	chr18:4238569-4258697	inner
LNCA_21_P0009018	0.8856989	A	0.8862761	A	0.999599995470533	0	lncRNA	TCONS_00024600	NA	NA	NA	NA	XLOC_011893	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011893), lincRNA [TCONS_00024600]"	chr16:21244815-21238850	hs|16p12.2	Agilent_HUMAN_G3V2	TCONS_00024600	TCONS_00024600	chr16	 21238850	 21244815	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43003_PI429285431	1.0093473	A	0.89158875	A	1.08504776267194	0	lncRNA	46172-1_{1..86}	ENST00000516421 ncrna:snoRNA chromosome:GRCh37:19:35128601:35128686:-1 gene:ENSG00000252230 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516421 ncrna:snoRNA chromosome:GRCh37:19:35128601:35128686:-1 gene:ENSG00000252230 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	 35128601	 35128686	-	ENSG00000252230	ENST00000516421	NA	NA	LOC100130342	NA	chr19:35136289-35137743	inter
CUST_39832_PI429285431	0.9164084	A	0.89865077	A	1.01238471437283	0	lncRNA	40738-2_{3001..5025}	n406427|NR_016021|lncRNA|Homosapiens||RefGeneNoncode|NR_016021||5.3292200|-0.3526673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406427|NR_016021|lncRNA|Homosapiens||RefGeneNoncode|NR_016021||5.3292200|-0.3526673	chr11	124495741	124497765	+	NA	NA	NA	NA	SIAE	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-55.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.12;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10chr11:124505685-124515822"	NA	inner
CUST_28641_PI429285431	6.1865606	P	6.4867206	P	0.812162319677889	0	lncRNA	30332-1_{1..452}	n326019|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047518|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047518|-1.0706300|-0.2096283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326019|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047518|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047518|-1.0706300|-0.2096283	chr10	 34013688	 34014139	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012188	0.8859883	A	0.88540274	A	1.00040596164318	0	lncRNA	XR_112192	XR_112192	XR_112192	NA	Hs.144785	LOC100134423	uncharacterized LOC100134423	NA	THC2623981	NA	"PREDICTED: Homo sapiens hypothetical LOC100134423, transcript variant 1 (LOC100134423), miscRNA [XR_112192]"	chr21:19110184-19110132	hs|21q21.1	Agilent_HUMAN_G3V2	XR_112192	XR_112192	chr21	 19110132	 19110184	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001292	0.88609385	A	0.88544565	A	1.0004493989519	0	lncRNA	TCONS_00000932	NA	NA	NA	NA	XLOC_000179	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000179), lincRNA [TCONS_00000932]"	chr1:48231409-48231468	hs|1p33	Agilent_HUMAN_G3V2	TCONS_00000932	TCONS_00000932	chr1	 48231409	 48231468	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48125_PI429285431	2.8408074	A	2.958958	A	0.921368001447477	0	lncRNA	51994-1_{1..1027}	"gi|397137273|ref|XR_111118.3| PREDICTED: Homo sapiens uncharacterized LOC100505869 (LOC100505869), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397137273|ref|XR_111118.3| PREDICTED: Homo sapiens uncharacterized LOC100505869 (LOC100505869), misc_RNA"	NA	NA	NA	NA	NA	XR_111118.3	NA	NA	NA	NA	NA	Unknown
CUST_37654_PI429285431	2.1607366	A	2.247335	A	0.94174057841189	0	lncRNA	38747-1_{1..2767}	n346135|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1685|NULL|-1.2734000|-0.1400489	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n346135|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1685|NULL|-1.2734000|-0.1400489	chr11	  2016405	  2019171	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012446	6.60153	P	6.9700975	P	0.774551192775959	0	lncRNA	TCONS_l2_00019354	NA	NA	NA	NA	XLOC_l2_010239	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010239), lincRNA [TCONS_l2_00019354]"	chr3:72228200-72228141	hs|3p13	Agilent_HUMAN_G3V2	TCONS_l2_00019354	TCONS_l2_00019354	chr3	 72228141	 72228200	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17230_PI429285431	0.8817221	A	0.88121706	A	1.00035012833269	0	lncRNA	18946-1_{1..518}	lnc-SCEL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SCEL-1:1	chr13	 78236924	 78237441	+	lnc-SCEL-1	lnc-SCEL-1:1	XLOC_010440	linc-SLAIN1	LOC100129307	NA	chr13:78235511-78236536	inter
LNCA_21_P0007184	3.5991406	P	3.6527276	P	0.963537686269609	0	lncRNA	TCONS_00019252	NA	NA	NA	NA	XLOC_009084	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009084), lincRNA [TCONS_00019252]"	chr11:20145135-20149413	hs|11p15.1	Agilent_HUMAN_G3V2	TCONS_00019252	TCONS_00019252	chr11	 20145135	 20149413	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007353	0.8893552	A	0.8881998	A	1.00080118302822	0	lncRNA	TCONS_00019636	NA	NA	NA	NA	XLOC_009440	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009440), lincRNA [TCONS_00019636]"	chr11:50231657-50231598	hs|11p11.12	Agilent_HUMAN_G3V2	TCONS_00019636	TCONS_00019636	chr11	 50231598	 50231657	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26069_PI429285431	0.8893142	A	0.8892399	A	1.00005150216171	0	lncRNA	27582-1_{1..358}	lnc-GLIPR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLIPR1-1:1	chr12	 76360660	 76361017	+	lnc-GLIPR1-1	lnc-GLIPR1-1:1	ENSG00000257329.1	RP11-290L1.5	NA	NA	NA	inter
CUST_448_PI429285431	0.90051264	A	0.9107276	A	0.992944536752924	0	lncRNA	440-1_{1..537}	"transcript_id ""ENST00000449024.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449024.1"" | genecode_v17"	chr1	149305910	149306446	-	ENSG00000233430.2	ENST00000449024.1	RP11-403I13.9	RP11-403I13.9-001	LOC645262	NA	chr1:149305909-149313154	inter
CUST_36922_PI429285431	1.460174	A	1.8132224	A	0.782928029893094	0	lncRNA	38079-1_{1..3000}	n345393|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_942|NULL|-1.4191300|-0.3315871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345393|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_942|NULL|-1.4191300|-0.3315871	chr21	 30756060	 30759059	-	NA	NA	NA	NA	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80"	NA	inter
CUST_13599_PI429285431	7.555571	P	7.5328026	P	1.01590704341201	0	lncRNA	15238-1_{1..2964}	lnc-PRELID2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRELID2-1:2	chr5	144867122	144870085	-	lnc-PRELID2-1	lnc-PRELID2-1:2	XLOC_005041	linc-YIPF5-3	NA	NA	NA	inter
LNCA_21_P0014153	0.8929943	A	1.3190567	A	0.744290434551329	0	lncRNA	XR_108616	XR_108616	XR_108616	NA	Hs.667523	LOC100506926	uncharacterized LOC100506926	ENST00000441863	THC2651205	NA	"PREDICTED: Homo sapiens hypothetical LOC100506926 (LOC100506926), miscRNA [XR_108616]"	chr6:85419025-85419084	hs|6q14.3	Agilent_HUMAN_G3V2	XR_108616	XR_108616	chr6	 85419025	 85419084	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002840	6.4310045	P	6.2962284	P	1.09792240777844	0	lncRNA	TCONS_00005744	NA	NA	NA	NA	XLOC_003053	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003053), lincRNA [TCONS_00005744]"	chr3:14240435-14240376	hs|3p25.1	Agilent_HUMAN_G3V2	TCONS_00005744	TCONS_00005744	chr3	 14240376	 14240435	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23418_PI429285431	0.8866047	A	0.88881314	A	0.998470397077414	0	lncRNA	24986-1_{1..689}	lnc-CA8-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CA8-4:1	chr8	 61464928	 61465616	-	lnc-CA8-4	lnc-CA8-4:1	ENSG00000255321.1	RP11-91I20.4	RAB2A	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80chr8:61454928-61475595"	NA	inner
CUST_27425_PI429285431	0.9095658	A	0.91472906	A	0.996427497514692	0	lncRNA	28990-1_{1..539}	n324595|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039808|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039808|-1.1937100|-0.3545282	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324595|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039808|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039808|-1.1937100|-0.3545282	chr6	 10531358	 10531896	-	NA	NA	NA	NA	GCNT2	NA	chr6:10521358-10544395	inner
LNCA_21_P0012548	2.5908298	A	2.87567	A	0.820832523223661	0	lncRNA	ENST00000468859	XR_108477	XR_108477	NA	Hs.506711	XLOC_l2_010330	NA	ENST00000468859	THC2566400	NA	"PREDICTED: Homo sapiens hypothetical LOC100131679 (LOC100131679), miscRNA [XR_108477]"	chr3:125581519-125581460	hs|3q21.2	Agilent_HUMAN_G3V2	ENST00000468859	ENST00000468859	chr3	125581460	125581519	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29839_PI429285431	6.125513	P	6.096919	P	1.02001756779973	0	lncRNA	31602-1_{1..297}	n333721|L01485|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191459|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191459|0.6758090|-0.1886937	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333721|L01485|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191459|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191459|0.6758090|-0.1886937	chr5	141993517	141993813	-	NA	NA	NA	NA	FGF1	NA	chr5:141983517-142033766	inner
LNCA_21_P0011020	2.3049958	A	3.6737523	P	0.387224864742415	0	lncRNA	AK126420	NA	AK126420	NA	NA	XLOC_l2_002790	NA	NA	THC2491875	NA	"BROAD Institute lincRNA (XLOC_l2_002790), lincRNA [TCONS_l2_00005211]"	chr11:117080178-117080237	hs|11q23.3	Agilent_HUMAN_G3V2	AK126420	AK126420	chr11	117080178	117080237	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27245_PI429285431	1.8851027	A	2.1277213	A	0.845209799896268	0	lncRNA	28794-1_{1..745}	n324387|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042243|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042243|-1.2835000|-0.4268564	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324387|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042243|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042243|-1.2835000|-0.4268564	chr6	132523597	132524341	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35149_PI429285431	1.3428471	A	0.90860814	A	1.35119787091831	0	lncRNA	36551-1_{1..1647}	n342121|BC029581|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4604|NULL|-0.0730906|-0.1269168	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342121|BC029581|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4604|NULL|-0.0730906|-0.1269168	chr6	127796365	127798011	+	NA	NA	NA	NA	C6orf174	"hg19_refFlat_SOGA3:range=chr6:127794426-1278377595'pad=0,hg19_refFlat_SOGA3:range=chr6:127794426-1278377595'pad=0 3'pad=0 strand=- repeatMasking=none,-103.90chr6:127786365-127807974"	NA	inner
CUST_35400_PI429285431	1.9908956	A	1.3937479	A	1.51272285865326	0	lncRNA	36811-1_{1..1651}	n342460|CR626667|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4954|NULL|-0.0204592|-0.2867160	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342460|CR626667|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4954|NULL|-0.0204592|-0.2867160	chr16	 18551565	 18553215	-	NA	NA	NA	NA	NOMO2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10chr16:18541565-18563216"	NA	inner
CUST_2920_PI429285431	5.2178717	P	5.6792927	P	0.726270557243737	0	lncRNA	2901-1_{1..505}	"transcript_id ""ENST00000420146.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420146.2"" | genecode_v17"	chr7	122709303	122709807	-	ENSG00000226680.2	ENST00000420146.2	RP11-61D3.1	RP11-61D3.1-001	SLC13A1	NA	chr7:122753588-122753643	inter
CUST_19132_PI429285431	1.0875746	A	1.1147604	A	0.981332673073071	0	lncRNA	20812-1_{1..2730}	lnc-ANGPTL2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-ANGPTL2-4:1	chr9	129170053	129172782	-	lnc-ANGPTL2-4	lnc-ANGPTL2-4:1	NRON	NR_045006.1	FAM125B	NA	chr9:129160053-129182783	inner
CUST_32285_PI429285431	0.89396876	A	0.90508586	A	0.992323826938133	0	lncRNA	33970-1_{1..1919}	n338863|BC035180|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1287|NULL|-1.1418700|-0.3479578	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338863|BC035180|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1287|NULL|-1.1418700|-0.3479578	chr2	 64749322	 64751240	-	NA	NA	NA	NA	AFTPH	NA	chr2:64751439-64761227	inter
CUST_2470_PI429285431	0.89806885	A	0.91289204	A	0.989777951568611	0	lncRNA	2462-1_{1..451}	"transcript_id ""ENST00000445883.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445883.1"" | genecode_v17"	chr6	  3894074	  3894524	+	ENSG00000233068.1	ENST00000445883.1	RP1-140K8.1	RP1-140K8.1-001	NA	NA	NA	inter
CUST_48342_PI429285431	5.0056715	P	5.342428	P	0.791819498948426	0	lncRNA	52197-1_{1..492}	hg19_lincRNAsTranscripts_TCONS_l2_00001241 range=chr1:54440815-54441432 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001241 range=chr1:54440815-54441432 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 54440815	 54441306	-	NA	NA	NA	NA	LDLRAD1	NA	chr1:54440851-54451432	inter
CUST_51497_PI429285431	0.89954513	A	0.9094294	A	0.99317216244989	0	lncRNA	55073-1_{1..1139}	hg19_lincRNAsTranscripts_TCONS_l2_00009828 range=chr16:73420747-73455287 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009828 range=chr16:73420747-73455287 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 73420747	 73421885	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_907_PI429285431	0.91829723	A	0.95757073	A	0.973144871997476	0	lncRNA	896-1_{1..1054}	"transcript_id ""ENST00000453714.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453714.3"" | genecode_v17"	chr2	 65677208	 65678261	-	ENSG00000234255.4	ENST00000453714.3	AC012370.3	AC012370.3-001	NA	NA	NA	inter
CUST_50022_PI429285431	4.4625697	P	4.4884534	P	0.982218771690661	0	lncRNA	53758-1_{1..1592}	hg19_lincRNAsTranscripts_TCONS_l2_00027579 range=chr8:8098372-8102381 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027579 range=chr8:8098372-8102381 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	  8098372	  8099963	+	NA	NA	NA	NA	NA	"hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ALG1L2:range=chr3:129800860-1298170985'pad=0,hg19_refFlat_ALG1L2:range=chr3:129800860-1298170985'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70"	NA	inter
LNCA_21_P0006540	0.9084685	A	0.9265483	A	0.987546235646489	0	lncRNA	TCONS_00017346	NA	NA	NA	NA	XLOC_008190	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008190), lincRNA [TCONS_00017346]"	chrX:75368047-75367988	hs|Xq13.3	Agilent_HUMAN_G3V2	TCONS_00017346	TCONS_00017346	chrX	 75367988	 75368047	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011141	8.647465	P	9.534089	P	0.540878328890503	0	lncRNA	THC2658074	NA	NA	NA	NA	XLOC_l2_003705	NA	NA	THC2658074	NA	"BROAD Institute lincRNA (XLOC_l2_003705), lincRNA [TCONS_l2_00006816]"	chr13:044561475-044561534	hs|13q14.11	Agilent_HUMAN_G3V2	THC2658074	THC2658074	chr13	 44561475	 44561534	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003281	2.0617452	A	3.3689477	P	0.404103709494112	0	lncRNA	TCONS_00007128	NA	NA	NA	NA	XLOC_003063	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003063), lincRNA [TCONS_00007128]"	chr3:19053616-19053557	hs|3p24.3	Agilent_HUMAN_G3V2	TCONS_00007128	TCONS_00007128	chr3	 19053557	 19053616	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30863_PI429285431	2.2406528	A	1.5332613	A	1.63284913375441	0	lncRNA	32651-1_{1..317}	n336860|AY566847|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331939_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331939_05|-1.3501500|-0.4084779	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336860|AY566847|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331939_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331939_05|-1.3501500|-0.4084779	chr6	   928346	   928662	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41697_PI429285431	2.9074032	A	2.7027733	A	1.15239068174859	0	lncRNA	43178-1_{1..94}	ENST00000385067 ncrna:miRNA chromosome:GRCh37:20:58883532:58883625:1 gene:ENSG00000207802 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385067 ncrna:miRNA chromosome:GRCh37:20:58883532:58883625:1 gene:ENSG00000207802 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 58883532	 58883625	+	ENSG00000207802	ENST00000385067	NA	NA	NA	NA	NA	inter
CUST_42182_PI429285431	0.89672565	A	0.90111613	A	0.996961377154559	0	lncRNA	44239-1_{1..81}	ENST00000582433 ncrna:miRNA chromosome:GRCh37:7:158384308:158384388:1 gene:ENSG00000265598 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582433 ncrna:miRNA chromosome:GRCh37:7:158384308:158384388:1 gene:ENSG00000265598 gene_biotype:miRNA transcript_biotype:miRNA	chr7	158384308	158384388	+	ENSG00000265598	ENST00000582433	NA	NA	PTPRN2	NA	chr7:158374308-158380482	inter
CUST_43837_PI429285431	7.120717	P	7.444292	P	0.799087282945734	0	lncRNA	48561-1_{1..1114}	"gi|299782589|ref|NR_033831.1| Homo sapiens putative uncharacterized protein UNQ6975/PRO21958 (UNQ6975), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299782589|ref|NR_033831.1| Homo sapiens putative uncharacterized protein UNQ6975/PRO21958 (UNQ6975), non-coding RNA"	Chr2	 45401480	 45402593	-	400952	NR_033831.1	NA	NA	NA	NA	NA	inter
CUST_39041_PI429285431	1.288129	A	2.607837	A	0.400616014861145	0	lncRNA	40021-1_{1..1179}	n385465|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ytc.1||2.8415500|-0.3829073	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385465|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ytc.1||2.8415500|-0.3829073	chr8	131307600	131308778	-	NA	NA	NA	NA	ASAP1	NA	chr8:131297600-131318779	inner
CUST_22792_PI429285431	0.9084853	A	1.6089518	A	0.615373191632193	0	lncRNA	24372-1_{1..508}	lnc-SIRT4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SIRT4-1:3	chr12	120647642	120648149	+	lnc-SIRT4-1	lnc-SIRT4-1:3	ENSG00000255857.1	RP1-278C19.3	RPLP0	NA	chr12:120637642-120639014	inter
CUST_4663_PI429285431	0.9046267	A	0.9253353	A	0.985748421343396	0	lncRNA	4609-1_{1..505}	"transcript_id ""ENST00000457672.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457672.2"" | genecode_v17"	chr13	 87564173	 87564677	+	ENSG00000233528.2	ENST00000457672.2	RP11-366K1.1	RP11-366K1.1-001	NA	NA	NA	inter
LNCA_21_P0001433	4.250367	P	4.4802065	P	0.852729752780648	0	lncRNA	TCONS_00001318	NA	NA	NA	NA	XLOC_000600	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000600), lincRNA [TCONS_00001318]"	chr1:228697915-228697974	hs|1q42.13	Agilent_HUMAN_G3V2	TCONS_00001318	TCONS_00001318	chr1	228697915	228697974	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49011_PI429285431	1.7925235	A	1.8663957	A	0.950084541635508	0	lncRNA	52839-1_{1..559}	hg19_lincRNAsTranscripts_TCONS_l2_00020053 range=chr3:197836983-197838437 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020053 range=chr3:197836983-197838437 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	197836983	197837541	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2891_PI429285431	1.5513576	A	1.8763865	A	0.79828239504065	0	lncRNA	2872-1_{1..534}	"transcript_id ""ENST00000416593.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416593.1"" | genecode_v17"	chr7	 95101147	 95101680	+	ENSG00000233942.1	ENST00000416593.1	AC004012.1	AC004012.1-001	NA	NA	NA	inter
CUST_4350_PI429285431	0.90114236	A	0.9167781	A	0.989220649011654	0	lncRNA	4305-1_{1..534}	"transcript_id ""ENST00000547882.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547882.1"" | genecode_v17"	chr12	 84665119	 84665652	+	ENSG00000257729.1	ENST00000547882.1	RP11-788H18.1	RP11-788H18.1-001	NA	NA	NA	inter
CUST_45513_PI429285431	1.8154802	A	2.2569423	A	0.736387937634195	0	lncRNA	49923-1_{1..921}	"gi|410170584|ref|XR_171055.1| PREDICTED: Homo sapiens uncharacterized LOC439951 (LOC439951), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170584|ref|XR_171055.1| PREDICTED: Homo sapiens uncharacterized LOC439951 (LOC439951), misc_RNA"	Chr10	 11653306	 11654226	+	439951	XR_171055.1	NA	NA	NA	NA	NA	inter
CUST_5361_PI429285431	2.5526981	A	2.3444917	A	1.15525104939064	0	lncRNA	5299-1_{1..395}	"transcript_id ""ENST00000560103.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560103.1"" | genecode_v17"	chr15	 99967214	 99967608	-	ENSG00000259341.1	ENST00000560103.1	RP11-20G13.1	RP11-20G13.1-001	NA	NA	NA	inter
CUST_22907_PI429285431	2.5708647	A	0.89269894	A	3.20020818357343	0	lncRNA	24483-2_{3001..5687}	lnc-ZNF154-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF154-1:2	chr19	 58223307	 58225993	-	lnc-ZNF154-1	lnc-ZNF154-1:2	ENSG00000249233.2	ZNF154	ZNF154	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SETMAR:range=chr3:4345055-43589305'pad=0,hg19_refFlat_SETMAR:range=chr3:4345055-43589305'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30chr19:58211810-58220579"	NA	inner
CUST_24810_PI429285431	0.8916787	A	1.0695382	A	0.884013618464082	0	lncRNA	26351-2_{3001..3105}	lnc-CASP9-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CASP9-3:1	chr1	 15673272	 15673376	-	lnc-CASP9-3	lnc-CASP9-3:1	ENSG00000233485.1	RP3-467K16.2	FHAD1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_FHAD1:range=chr1:15578281-157239095'pad=0,hg19_refFlat_FHAD1:range=chr1:15578281-157239095'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr1:15660272-15680372"	NA	inner
CUST_36788_PI429285431	0.89423525	A	0.89077413	A	1.00240194563007	0	lncRNA	37960-1_{1..1125}	n345267|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_816|NULL|-1.3088000|-0.1587009	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345267|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_816|NULL|-1.3088000|-0.1587009	chr14	 69070536	 69071660	+	NA	NA	NA	NA	RAD51B	NA	chr14:69060536-69062738	inter
CUST_41189_PI429285431	3.218496	P	3.444388	P	0.85506618566144	0	lncRNA	42046-1_{1..75}	ENST00000583417 ncrna:miRNA chromosome:GRCh37:1:241295572:241295646:1 gene:ENSG00000265831 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583417 ncrna:miRNA chromosome:GRCh37:1:241295572:241295646:1 gene:ENSG00000265831 gene_biotype:miRNA transcript_biotype:miRNA	chr1	241295572	241295646	+	ENSG00000265831	ENST00000583417	NA	NA	RGS7	NA	chr1:241285572-241305646	inner
CUST_15851_PI429285431	0.88632	A	0.88938254	A	0.997879460560936	0	lncRNA	17545-1_{1..1293}	lnc-AL772363.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL772363.1-1:3	chr9	140769915	140771207	-	lnc-AL772363.1-1	lnc-AL772363.1-1:3	XLOC_007904	linc-C9orf37-1	CACNA1B	NA	chr9:140772241-140780844	inter
CUST_34892_PI429285431	4.1468916	P	4.2265277	P	0.946296306865315	0	lncRNA	36317-1_{1..1234}	n341807|AF116701|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4285|NULL|-1.0034600|-0.2411651	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341807|AF116701|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4285|NULL|-1.0034600|-0.2411651	chr9	138716694	138717927	+	NA	NA	NA	NA	CAMSAP1	"hg19_refFlat_CAMSAP1:range=chr9:138703155-1387990055'pad=0,hg19_refFlat_CAMSAP1:range=chr9:138703155-1387990055'pad=0 3'pad=0 strand=- repeatMasking=none,-106.40chr9:138706694-138799005"	NA	inner
LNCA_21_P0007085	0.8900349	A	1.1850629	A	0.815056513533637	0	lncRNA	TCONS_00018844	NA	NA	NA	NA	XLOC_008652	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008652), lincRNA [TCONS_00018844]"	chr10:125242628-125242687	hs|10q26.13	Agilent_HUMAN_G3V2	TCONS_00018844	TCONS_00018844	chr10	125242628	125242687	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26893_PI429285431	2.6033146	A	3.3231683	A	0.607159009512063	0	lncRNA	28410-1_{1..380}	n323968|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054329|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054329|-1.3365900|-0.4276595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323968|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054329|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054329|-1.3365900|-0.4276595	chr9	129841234	129841613	-	NA	NA	NA	NA	RALGPS1	NA	chr9:129831234-129869462	inner
CUST_46024_PI429285431	0.9144483	A	0.9014008	A	1.00908485690312	0	lncRNA	50306-1_{1..2502}	"gi|219521844|ref|NR_026544.1| Homo sapiens PCED1B antisense RNA 1 (PCED1B-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|219521844|ref|NR_026544.1| Homo sapiens PCED1B antisense RNA 1 (PCED1B-AS1), non-coding RNA"	Chr12	 47602203	 47604704	-	100233209	NR_026544.1	NA	NA	NA	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-61.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80"	NA	inter
CUST_19920_PI429285431	0.88974214	A	0.9267374	A	0.974682833223926	0	lncRNA	21575-1_{1..644}	lnc-PROC-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PROC-2:2	chr2	128247108	128247751	+	lnc-PROC-2	lnc-PROC-2:2	ENSG00000231731.2	AC010976.2	IWS1	NA	chr2:128238383-128257366	inner
CUST_41725_PI429285431	6.9210377	P	6.8769364	P	1.03104071161128	0	lncRNA	43247-1_{1..83}	ENST00000408584 ncrna:miRNA chromosome:GRCh37:15:100332502:100332584:1 gene:ENSG00000221511 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408584 ncrna:miRNA chromosome:GRCh37:15:100332502:100332584:1 gene:ENSG00000221511 gene_biotype:miRNA transcript_biotype:miRNA	chr15	100332502	100332584	+	ENSG00000221511	ENST00000408584	NA	NA	NA	NA	NA	inter
CUST_33939_PI429285431	2.7833622	A	3.3160837	P	0.691249530224536	0	lncRNA	35479-1_{1..1809}	n340739|BC014215|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3202|NULL|-0.8583550|-0.1968472	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340739|BC014215|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3202|NULL|-0.8583550|-0.1968472	chr17	 48240883	 48242691	-	NA	NA	NA	NA	SGCA	NA	chr17:48243366-48252677	inter
CUST_657_PI429285431	3.5491586	P	3.8085792	P	0.835423366005206	0	lncRNA	650-1_{1..718}	"transcript_id ""ENST00000425776.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425776.1"" | genecode_v17"	chr2	  3135353	  3136070	-	ENSG00000236760.1	ENST00000425776.1	AC019118.3	AC019118.3-002	NA	NA	NA	inter
CUST_43271_PI429285431	3.1126933	P	3.813529	P	0.615215731664866	0	lncRNA	48089-1_{1..221}	ENST00000602325 havana:sense_intronic chromosome:GRCh37:9:125134884:125135104:1 gene:ENSG00000269970 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602325 havana:sense_intronic chromosome:GRCh37:9:125134884:125135104:1 gene:ENSG00000269970 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr9	125134884	125135104	+	ENSG00000269970	ENST00000602325	NA	NA	PTGS1	NA	chr9:125133229-125145104	inner
LNCA_21_P0005677	0.88656765	A	1.4736323	A	0.665695974804907	0	lncRNA	TCONS_00014661	NA	NA	NA	NA	XLOC_006757	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006757), lincRNA [TCONS_00014661]"	chr8:29735408-29735467	hs|8p12	Agilent_HUMAN_G3V2	TCONS_00014661	TCONS_00014661	chr8	 29735408	 29735467	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1034_PI429285431	0.8909936	A	1.3537272	A	0.725610078647362	0	lncRNA	1024-1_{1..745}	"transcript_id ""ENST00000449954.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449954.1"" | genecode_v17"	chr2	114270040	114270784	+	ENSG00000234148.2	ENST00000449954.1	RP11-395L14.3	RP11-395L14.3-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50"	NA	inter
CUST_10989_PI429285431	1.0355448	A	1.4042621	A	0.774470772630456	0	lncRNA	12533-1_{1..562}	lnc-BASP1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BASP1-3:2	chr5	 17441578	 17442139	+	lnc-BASP1-3	lnc-BASP1-3:2	XLOC_004308	linc-PRDM9-8	NA	NA	NA	inter
LNCA_21_P0001220	4.860633	P	5.043037	P	0.881233350289318	0	lncRNA	ENST00000439570	NA	NA	NA	NA	XLOC_001193	NA	ENST00000439570	NA	NA	"BROAD Institute lincRNA (XLOC_001193), lincRNA [TCONS_00000727]"	chr1:212640217-212640158	hs|1q32.3	Agilent_HUMAN_G3V2	ENST00000439570	ENST00000439570	chr1	212640158	212640217	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005618	5.847358	P	6.267235	P	0.747488350292313	0	lncRNA	XR_108889	XR_108889	XR_108889	NA	Hs.598335	LOC100129104	uncharacterized LOC100129104	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100129104 (LOC100129104), miscRNA [XR_108889]"	chr8:134585887-134585946	hs|8q24.22	Agilent_HUMAN_G3V2	XR_108889	XR_108889	chr8	134585887	134585946	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15263_PI429285431	3.7190938	P	3.9549851	P	0.849160224097358	0	lncRNA	16936-1_{1..336}	lnc-ZNF827-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF827-4:1	chr4	146509042	146509377	-	lnc-ZNF827-4	lnc-ZNF827-4:1	XLOC_004112	linc-OTUD4-3	NA	NA	NA	inter
CUST_41710_PI429285431	1.9855119	A	1.949175	A	1.0255066875688	0	lncRNA	43215-1_{1..89}	ENST00000385274 ncrna:miRNA chromosome:GRCh37:11:57408671:57408759:1 gene:ENSG00000208009 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385274 ncrna:miRNA chromosome:GRCh37:11:57408671:57408759:1 gene:ENSG00000208009 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 57408671	 57408759	+	ENSG00000208009	ENST00000385274	NA	NA	YPEL4	NA	chr11:57412560-57417417	inter
CUST_42936_PI429285431	0.99218243	A	0.92828894	A	1.0452829271428	0	lncRNA	46053-1_{1..72}	ENST00000516571 ncrna:snoRNA chromosome:GRCh37:14:61729679:61729750:-1 gene:ENSG00000252380 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516571 ncrna:snoRNA chromosome:GRCh37:14:61729679:61729750:-1 gene:ENSG00000252380 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 61729679	 61729750	-	ENSG00000252380	ENST00000516571	NA	NA	NA	NA	NA	inter
LNCA_21_P0011460	0.8859221	A	0.88536197	A	1.00038832791002	0	lncRNA	ENST00000443373	NA	NA	NA	NA	XLOC_l2_005428	NA	ENST00000443373	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005428), lincRNA [TCONS_l2_00010450]"	chr16:26596144-26596085	hs|16p12.1	Agilent_HUMAN_G3V2	ENST00000443373	ENST00000443373	chr16	 26596085	 26596144	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011765	6.97255	P	7.4357834	P	0.725358745485988	0	lncRNA	TCONS_l2_00013244	NA	NA	NA	NA	XLOC_l2_007135	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007135), lincRNA [TCONS_l2_00013244]"	chr19:56127700-56126747	hs|19q13.42	Agilent_HUMAN_G3V2	TCONS_l2_00013244	TCONS_l2_00013244	chr19	 56126747	 56127700	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2984_PI429285431	1.0623301	A	1.8744035	A	0.56956271023015	0	lncRNA	2963-1_{1..574}	"transcript_id ""ENST00000519555.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519555.1"" | genecode_v17"	chr8	  5901875	  5902448	-	ENSG00000253880.1	ENST00000519555.1	RP11-124B13.1	RP11-124B13.1-001	NA	NA	NA	inter
CUST_33169_PI429285431	0.88379574	A	1.2864027	A	0.756490064614793	0	lncRNA	34762-1_{1..643}	n339859|BC042433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2307|NULL|3.9311000|-0.3512448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339859|BC042433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2307|NULL|3.9311000|-0.3512448	chr4	 12225105	 12225747	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46532_PI429285431	5.724085	P	6.3919353	P	0.629443897064143	0	lncRNA	50721-1_{1..742}	"gi|310123358|ref|XR_110596.1| PREDICTED: Homo sapiens uncharacterized LOC100505616, transcript variant 1 (LOC100505616), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310123358|ref|XR_110596.1| PREDICTED: Homo sapiens uncharacterized LOC100505616, transcript variant 1 (LOC100505616), misc_RNA"	Chr15	 83419316	 83420057	+	100505616	XR_110596.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0014768	4.047243	P	4.8613586	P	0.568757038852099	0	lncRNA	XR_132536	XR_132536	XR_132536	NA	Hs.690809	LOC100653016	uncharacterized LOC100653016	NA	THC2504285	NA	"PREDICTED: Homo sapiens hypothetical LOC100653016 (LOC100653016), miscRNA [XR_132536]"	chr7:66205263-66205322	hs|7q11.21	Agilent_HUMAN_G3V2	XR_132536	XR_132536	chr7	 66205263	 66205322	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005946	0.88709587	A	0.8861134	A	1.00068122824112	0	lncRNA	TCONS_00015340	NA	NA	NA	NA	XLOC_006912	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006912), lincRNA [TCONS_00015340]"	chr8:124460437-124478254	hs|8q24.13	Agilent_HUMAN_G3V2	TCONS_00015340	TCONS_00015340	chr8	124460437	124478254	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49483_PI429285431	0.8814361	A	0.94856817	A	0.954533628362989	0	lncRNA	53275-1_{1..2116}	hg19_lincRNAsTranscripts_TCONS_l2_00024568 range=chr6:2851405-2853594 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024568 range=chr6:2851405-2853594 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	  2851405	  2853520	-	NA	NA	NA	NA	SERPINB1	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-60.10chr6:2841405-2842081"	NA	inter
CUST_49808_PI429285431	0.8994334	A	1.2633972	A	0.777026765639049	0	lncRNA	53564-1_{1..444}	hg19_lincRNAsTranscripts_TCONS_l2_00025926 range=chr7:63386113-63411851 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025926 range=chr7:63386113-63411851 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 63386113	 63386556	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008169	0.89041394	A	0.8892435	A	1.00081161636848	0	lncRNA	TCONS_00022032	NA	NA	NA	NA	XLOC_010630	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010630), lincRNA [TCONS_00022032]"	chr13:57787281-57787222	hs|13q21.1	Agilent_HUMAN_G3V2	TCONS_00022032	TCONS_00022032	chr13	 57787222	 57787281	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26875_PI429285431	7.6303205	P	8.217824	P	0.66549350911259	0	lncRNA	28392-1_{1..739}	n323950|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054582|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054582|-1.1045100|-0.2494068	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323950|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054582|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054582|-1.1045100|-0.2494068	chr9	131305101	131305839	+	NA	NA	NA	NA	SPTAN1	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40chr9:131314837-131325617"	NA	inner
CUST_35437_PI429285431	6.6984324	P	6.457423	P	1.18181924715126	0	lncRNA	36843-1_{1..987}	n342500|BC061594|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4994|NULL|1.3089500|-0.3137037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342500|BC061594|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4994|NULL|1.3089500|-0.3137037	chr3	 42842341	 42843327	-	NA	NA	NA	NA	CCBP2	NA	chr3:42850964-42853311	inner
CUST_39579_PI429285431	4.9464407	P	5.4933057	P	0.684505956104588	0	lncRNA	40522-1_{1..592}	n387557|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011hwo.1||-0.6580190|-0.0967903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387557|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011hwo.1||-0.6580190|-0.0967903	chr6	  3361010	  3361601	+	NA	NA	NA	NA	SLC22A23	NA	chr6:3351010-3371804	inner
LNCA_21_P0012206	0.894283	A	0.89306164	A	1.00084694069234	0	lncRNA	ENST00000417335	XR_109675	XR_109675	NA	Hs.729949	XLOC_l2_009219	NA	ENST00000417335	THC2740149	NA	"PREDICTED: Homo sapiens hypothetical LOC100506471 (LOC100506471), miscRNA [XR_109675]"	chr21:40377745-40377686	hs|21q22.2	Agilent_HUMAN_G3V2	ENST00000417335	ENST00000417335	chr21	 40377686	 40377745	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47571_PI429285431	10.893605	P	10.880483	P	1.00913696685067	0	lncRNA	51576-1_{1..1199}	"gi|239835755|ref|NR_027783.1| Homo sapiens spermidine/spermine N1-acetyltransferase 1 (SAT1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239835755|ref|NR_027783.1| Homo sapiens spermidine/spermine N1-acetyltransferase 1 (SAT1), transcript variant 2, non-coding RNA"	ChrX	 23801275	 23802473	+	6303	NR_027783.1	NA	NA	NA	NA	NA	inter
CUST_18066_PI429285431	9.506035	P	9.55411	P	0.967226046056413	0	lncRNA	19801-1_{1..1034}	lnc-DLL1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLL1-4:1	chr6	170454222	170455255	-	lnc-DLL1-4	lnc-DLL1-4:1	XLOC_005944	linc-TCTE3-2	NA	NA	NA	inter
CUST_33001_PI429285431	5.005822	P	5.5371094	P	0.69193700317897	0	lncRNA	34616-1_{1..1530}	n339683|BC048277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2128|NULL|-0.8496590|-0.2578421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339683|BC048277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2128|NULL|-0.8496590|-0.2578421	chr20	 42839599	 42841128	+	NA	NA	NA	NA	C20orf111	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-19.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20chr20:42829599-42839546"	NA	inter
CUST_12241_PI429285431	5.3712635	P	3.7645726	P	3.04552490032882	0	lncRNA	13846-2_{3001..6000}	lnc-NAP1L2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAP1L2-1:3	chrX	 73073337	 73076336	-	lnc-NAP1L2-1	lnc-NAP1L2-1:3	XLOC_008185	linc-NAP1L2-4	NA	NA	NA	inter
CUST_35796_PI429285431	0.88320565	A	0.8844203	A	0.999158423101779	0	lncRNA	37206-1_{1..624}	n344476|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_24|NULL|-1.2979800|-0.2434675	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344476|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_24|NULL|-1.2979800|-0.2434675	chr6	112304068	112304691	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006542	0.89039856	A	0.89005536	A	1.00023791640999	0	lncRNA	TCONS_00017356	NA	NA	NA	NA	XLOC_008200	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008200), lincRNA [TCONS_00017356]"	chrX:102785686-102785235	hs|Xq22.2	Agilent_HUMAN_G3V2	TCONS_00017356	TCONS_00017356	chrX	102785235	102785686	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9711_PI429285431	3.2072651	P	3.86151	P	0.635407973885418	0	lncRNA	11227-1_{1..582}	lnc-FRG1-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRG1-4:7	chr4	190473018	190473599	+	lnc-FRG1-4	lnc-FRG1-4:7	XLOC_003840	linc-FRG1-4	NA	NA	NA	inter
CUST_15357_PI429285431	3.9056022	P	3.547181	P	1.28202216050307	0	lncRNA	17039-1_{1..595}	lnc-HOXB7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOXB7-1:2	chr17	 46723967	 46724561	-	lnc-HOXB7-1	lnc-HOXB7-1:2	XLOC_012505	linc-HOXB9	NA	NA	NA	inter
LNCA_21_P0011829	2.3178544	A	0.9243747	A	2.62711562868637	0	lncRNA	ENST00000414647	NA	NA	NA	NA	XLOC_l2_007452	NA	ENST00000414647	THC2705360	NA	"BROAD Institute lincRNA (XLOC_l2_007452), lincRNA [TCONS_l2_00015413]"	chr2:101225729-101225788	hs|2q11.2	Agilent_HUMAN_G3V2	ENST00000414647	ENST00000414647	chr2	101225729	101225788	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7677_PI429285431	0.90549743	A	0.90613234	A	0.999560010747264	0	lncRNA	9310-1_{1..1080}	lnc-HIATL1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HIATL1-4:1	chr9	 97329672	 97330751	+	lnc-HIATL1-4	lnc-HIATL1-4:1	ENSG00000231806	RP11-342C23.4	FBP2	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_FBP2:range=chr9:97321220-973560085'pad=0,hg19_refFlat_FBP2:range=chr9:97321220-973560085'pad=0 3'pad=0 strand=- repeatMasking=none,-98.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00chr9:97319672-97340312"	NA	inner
CUST_16787_PI429285431	0.8961016	A	0.9097104	A	0.99061144890307	0	lncRNA	18496-1_{1..3000}	lnc-TM2D3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TM2D3-1:2	chr15	102154153	102157152	-	lnc-TM2D3-1	lnc-TM2D3-1:2	XLOC_011616	linc-PCSK6-2	NA	NA	NA	inter
CUST_23026_PI429285431	0.8942914	A	1.06289	A	0.889706501502111	0	lncRNA	24597-2_{3001..5920}	lnc-AC008132.13.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC008132.13.1-1:1	chr22	 18848895	 18851814	+	lnc-AC008132.13.1-1	lnc-AC008132.13.1-1:1	ENSG00000161103.6	AC008103.5	LOC100287541	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0,hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00chr22:18842618-18849298"	NA	inter
CUST_9130_PI429285431	1.169239	A	1.0718182	A	1.06985909495876	0	lncRNA	10649-1_{1..2885}	lnc-CDK18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK18-1:1	chr1	205435749	205438633	+	lnc-CDK18-1	lnc-CDK18-1:1	ENSG00000224717	RP11-576D8.4	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10"	NA	inter
CUST_41519_PI429285431	6.5184927	P	6.611309	P	0.93769048605175	0	lncRNA	42757-1_{1..60}	ENST00000578108 ncrna:miRNA chromosome:GRCh37:22:38384801:38384860:1 gene:ENSG00000264505 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578108 ncrna:miRNA chromosome:GRCh37:22:38384801:38384860:1 gene:ENSG00000264505 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 38384801	 38384860	+	ENSG00000264505	ENST00000578108	NA	NA	SOX10	NA	chr22:38374801-38380539	inter
CUST_13726_PI429285431	1.1349418	A	0.92237514	A	1.1587478483911	0	lncRNA	15364-1_{1..435}	lnc-F8A3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-F8A3-1:1	chrX	154649080	154649514	-	lnc-F8A3-1	lnc-F8A3-1:1	XLOC_008269	linc-CLIC2-2	NA	NA	NA	inter
CUST_40325_PI429285431	0.90813565	A	0.9160569	A	0.994524453647526	0	lncRNA	41128-1_{1..648}	n408365|NR_029461_5|lncRNA|Homosapiens||RefGeneNoncode|NR_029461_5||-0.8865030|-0.3250349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408365|NR_029461_5|lncRNA|Homosapiens||RefGeneNoncode|NR_029461_5||-0.8865030|-0.3250349	chr6	  2896839	  2897486	+	NA	NA	NA	NA	SERPINB9	NA	chr6:2887504-2903545	inner
LNCA_21_P0014734	1.5949831	A	0.9231491	A	1.593096876424	0	lncRNA	XR_113110	XR_113110	XR_113110	NA	NA	LOC100507760	uncharacterized LOC100507760	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507760 (LOC100507760), miscRNA [XR_113110]"	chr8:9638454-9638512	hs|8p23.1	Agilent_HUMAN_G3V2	XR_113110	XR_113110	chr8	  9638454	  9638512	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36143_PI429285431	5.0233502	P	5.149695	P	0.916149661352125	0	lncRNA	37422-7_{18001..21000}	n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	chr8	128107803	128110802	-	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00"	NA	inter
CUST_20196_PI429285431	4.966231	P	5.316376	P	0.784505246182337	0	lncRNA	21839-1_{1..540}	lnc-CAPSL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CAPSL-1:1	chr5	 35826948	 35827487	-	lnc-CAPSL-1	lnc-CAPSL-1:1	ENSG00000248969.1	CTD-2113L7.1	NA	NA	NA	inter
CUST_12194_PI429285431	5.320405	P	5.291901	P	1.01995393777737	0	lncRNA	13794-1_{1..996}	lnc-FAM201A-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM201A-3:3	chr9	 38997940	 38998935	+	lnc-FAM201A-3	lnc-FAM201A-3:3	XLOC_007354	linc-FAM75A1-2	NA	NA	NA	inter
CUST_51278_PI429285431	1.2024823	A	1.1416721	A	1.04305136135963	0	lncRNA	54884-1_{1..502}	hg19_lincRNAsTranscripts_TCONS_l2_00008969 range=chr15:30700304-30701857 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008969 range=chr15:30700304-30701857 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 30700304	 30700805	-	NA	NA	NA	NA	LOC100652910	NA	chr15:30690304-30706365	inter
CUST_14399_PI429285431	4.7728863	P	5.19168	P	0.748049839865424	0	lncRNA	16060-2_{3001..5126}	lnc-ASAP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASAP1-2:1	chr8	131544090	131546215	-	lnc-ASAP1-2	lnc-ASAP1-2:1	XLOC_007223	linc-ASAP1-1	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_26094_PI429285431	3.988882	P	4.397345	P	0.7534256212425	0	lncRNA	27607-1_{1..595}	lnc-KCNMB4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNMB4-1:1	chr12	 70931830	 70932424	+	lnc-KCNMB4-1	lnc-KCNMB4-1:1	ENSG00000258168.1	RP11-588H23.3	PTPRB	NA	chr12:70921830-70941840	inner
CUST_50449_PI429285431	11.650015	P	11.23147	P	1.33657889604472	0	lncRNA	54155-1_{1..996}	hg19_lincRNAsTranscripts_TCONS_l2_00030233 range=chrX:63264305-63265448 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030233 range=chrX:63264305-63265448 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 63264305	 63265300	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003034	0.9031852	A	0.9219688	A	0.987064591559125	0	lncRNA	TCONS_00006236	NA	NA	NA	NA	XLOC_002829	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002829), lincRNA [TCONS_00006236]"	chr3:132551706-132551765	hs|3q22.1	Agilent_HUMAN_G3V2	TCONS_00006236	TCONS_00006236	chr3	132551706	132551765	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_131_PI429285431	5.909277	P	6.017324	P	0.927843248778109	0	lncRNA	123-1_{1..510}	"transcript_id ""ENST00000430109.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430109.1"" | genecode_v17"	chr1	  1365919	  1366428	-	ENSG00000225285.1	ENST00000430109.1	RP4-758J18.10	RP4-758J18.10-001	VWA1	NA	chr1:1370903-1378262	inter
LNCA_21_P0014924	0.901763	A	0.91154087	A	0.993245412452102	0	lncRNA	ENST00000458325	XR_133225	XR_133225	NA	NA	LOC100506915	NA	ENST00000458325	THC2618847	NA	"PREDICTED: Homo sapiens hypothetical LOC100506915 (LOC100506915), miscRNA [XR_133225]"	chr1:239870604-239870545	hs|1q43	Agilent_HUMAN_G3V2	ENST00000458325	ENST00000458325	chr1	239870545	239870604	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45139_PI429285431	6.494628	P	6.9403853	P	0.734198819561817	0	lncRNA	49619-1_{1..1643}	"gi|211938423|ref|NR_024362.1| Homo sapiens family with sequence similarity 86, member B3, pseudogene (FAM86B3P), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|211938423|ref|NR_024362.1| Homo sapiens family with sequence similarity 86, member B3, pseudogene (FAM86B3P), transcript variant 1, non-coding RNA"	Chr8	  8086092	  8087734	+	286042	NR_024362.1	NA	NA	NA	NA	NA	inter
CUST_4168_PI429285431	0.88382435	A	1.352351	A	0.722702279564536	0	lncRNA	4126-1_{1..241}	"transcript_id ""ENST00000539988.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539988.1"" | genecode_v17"	chr12	 12821916	 12822156	+	ENSG00000257004.1	ENST00000539988.1	RP11-180M15.3	RP11-180M15.3-001	GPR19	NA	chr12:12813995-12848009	inner
CUST_30980_PI429285431	12.084083	P	12.059516	P	1.01717435896833	0	lncRNA	32768-1_{1..328}	n337132|AB252975|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383682|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383682|-0.8415520|-0.0478325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337132|AB252975|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383682|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383682|-0.8415520|-0.0478325	chr5	150443174	150443501	-	NA	NA	NA	NA	TNIP1	NA	chr5:150433174-150460997	inner
CUST_46060_PI429285431	10.919278	P	11.057489	P	0.908645213682826	0	lncRNA	50335-1_{1..853}	"gi|315113898|ref|NR_037656.1| Homo sapiens biogenesis of lysosomal organelles complex-1, subunit 1 (BLOC1S1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315113898|ref|NR_037656.1| Homo sapiens biogenesis of lysosomal organelles complex-1, subunit 1 (BLOC1S1), transcript variant 3, non-coding RNA"	Chr12	 56110076	 56110928	+	2647	NR_037656.1	NA	NA	NA	NA	NA	inter
CUST_31410_PI429285431	1.0278429	A	1.5397465	A	0.701296483957659	0	lncRNA	33182-2_{3001..3365}	n337874|BC042953|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|257|NULL|-1.0616000|-0.3427013	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337874|BC042953|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|257|NULL|-1.0616000|-0.3427013	chrX	139875023	139875387	+	NA	NA	NA	NA	CDR1	NA	chrX:139865425-139866723	inter
CUST_20392_PI429285431	2.9760683	P	3.1056674	A	0.914085423470169	0	lncRNA	22033-1_{1..573}	lnc-TPCN2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TPCN2-5:2	chr11	 68926914	 68927486	+	lnc-TPCN2-5	lnc-TPCN2-5:2	ENSG00000259799.1	RP11-554A11.9	NA	NA	NA	inter
CUST_1462_PI429285431	1.0808015	A	1.5638679	A	0.715455330441555	0	lncRNA	1451-1_{1..811}	"transcript_id ""ENST00000567253.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567253.1"" | genecode_v17"	chr3	128578559	128579369	-	ENSG00000261159.1	ENST00000567253.1	RP11-723O4.9	RP11-723O4.9-001	NA	NA	NA	inter
LNCA_21_P0003834	0.8894305	A	0.8935485	A	0.997149689780063	0	lncRNA	TCONS_00008795	NA	NA	NA	NA	XLOC_003547	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003547), lincRNA [TCONS_00008795]"	chr4:58067945-58069691	hs|4q12	Agilent_HUMAN_G3V2	TCONS_00008795	TCONS_00008795	chr4	 58067945	 58069691	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26135_PI429285431	2.2393937	A	2.2617903	A	0.984595738181817	0	lncRNA	27646-1_{1..2279}	lnc-PIRT-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PIRT-1:2	chr17	 10705103	 10707381	-	lnc-PIRT-1	lnc-PIRT-1:2	ENSG00000263429.1	AC002347.2	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60"	NA	inter
LNCA_21_P0014724	1.8571775	A	2.0253704	A	0.889956730881209	0	lncRNA	XR_112814	XR_112814	XR_112814	NA	Hs.104944	LOC100507336	uncharacterized LOC100507336	NA	THC2604536	NA	"PREDICTED: Homo sapiens hypothetical LOC100507336, transcript variant 3 (LOC100507336), miscRNA [XR_112814]"	chr6:3688435-3688378	hs|6p25.2	Agilent_HUMAN_G3V2	XR_112814	XR_112814	chr6	  3688378	  3688435	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28705_PI429285431	7.599536	P	8.158135	P	0.678961182346801	0	lncRNA	30405-1_{1..691}	n326094|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046510|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046510|-1.0542600|-0.2452401	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326094|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046510|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046510|-1.0542600|-0.2452401	chr10	  4447496	  4448186	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6735_PI429285431	1.631506	A	2.0473971	A	0.749556378052153	0	lncRNA	6683-1_{1..483}	"transcript_id ""ENST00000458293.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458293.2"" | genecode_v17"	chr20	 55305453	 55305935	+	ENSG00000231604.2	ENST00000458293.2	RP5-897D18.1	RP5-897D18.1-001	NA	NA	NA	inter
CUST_25702_PI429285431	0.88428354	A	0.88845676	A	0.997111524020463	0	lncRNA	27230-1_{1..2544}	lnc-RP4-788L13.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RP4-788L13.1.1-1:1	chr1	 99612330	 99614873	+	lnc-RP4-788L13.1.1-1	lnc-RP4-788L13.1.1-1:1	ENSG00000232825.1	RP5-896L10.1	NA	"hg19_refFlat_LPPR5:range=chr1:99358628-994702275'pad=0,hg19_refFlat_LPPR5:range=chr1:99358628-994702275'pad=0 3'pad=0 strand=- repeatMasking=none,-105.60"	NA	inter
CUST_14753_PI429285431	2.8555555	A	2.235535	A	1.53689701969749	0	lncRNA	16416-1_{1..206}	lnc-KDM4C-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KDM4C-4:1	chr9	  7209783	  7209988	+	lnc-KDM4C-4	lnc-KDM4C-4:1	XLOC_007277	linc-TYRP1-6	NA	NA	NA	inter
CUST_33886_PI429285431	0.90552956	A	1.1966546	A	0.817264492186897	0	lncRNA	35429-1_{1..2207}	n340676|AK125371|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3139|NULL|-1.1063700|-0.2948036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340676|AK125371|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3139|NULL|-1.1063700|-0.2948036	chr5	145960708	145962914	-	NA	NA	NA	NA	PPP2R2B	NA	chr5:145969067-145972915	inter
CUST_5825_PI429285431	1.3418688	A	1.3166736	A	1.01761736878917	0	lncRNA	5754-1_{1..1298}	"transcript_id ""ENST00000592381.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592381.1"" | genecode_v17"	chr17	 33895139	 33896436	+	ENSG00000267321.1	ENST00000592381.1	RP11-1094M14.11	RP11-1094M14.11-001	PEX12	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00chr17:33901814-33905656"	NA	inter
CUST_6873_PI429285431	0.90100807	A	1.2619275	A	0.778668176026506	0	lncRNA	6823-1_{1..1542}	"transcript_id ""ENST00000457325.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457325.1"" | genecode_v17"	chr21	 41099682	 41101223	+	ENSG00000231713.2	ENST00000457325.1	AF064860.7	AF064860.7-001	NA	NA	NA	inter
CUST_29283_PI429285431	1.795569	A	1.9865667	A	0.875999711618492	0	lncRNA	31034-1_{1..592}	n332393|AM990320|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500204|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500204|2.2383000|-0.2543691	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332393|AM990320|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500204|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500204|2.2383000|-0.2543691	chr1	 67648590	 67649181	+	NA	NA	NA	NA	IL23R	NA	chr1:67638590-67725662	inner
CUST_44267_PI429285431	3.511522	P	3.8488445	P	0.791508912218789	0	lncRNA	48907-2_{3001..3535}	"gi|343098502|ref|NR_033119.2| Homo sapiens Zic family member 4 (ZIC4), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|343098502|ref|NR_033119.2| Homo sapiens Zic family member 4 (ZIC4), transcript variant 5, non-coding RNA"	Chr3	147106835	147107369	-	84107	NR_033119.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0003278	8.995261	P	9.048053	P	0.964068791966927	0	lncRNA	TCONS_00007118	NA	NA	NA	NA	XLOC_003052	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003052), lincRNA [TCONS_00007118]"	chr3:13691851-13691792	hs|3p25.1	Agilent_HUMAN_G3V2	TCONS_00007118	TCONS_00007118	chr3	 13691792	 13691851	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31402_PI429285431	1.9079267	A	2.5343738	A	0.647769703821493	0	lncRNA	33177-2_{3001..3616}	n337869|D16472|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|252|NULL|-1.0198400|-0.3892133	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337869|D16472|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|252|NULL|-1.0198400|-0.3892133	chrX	138005322	138005937	+	NA	NA	NA	NA	FGF13	NA	chrX:137992322-138015938	inner
CUST_16733_PI429285431	0.88753057	A	0.8927536	A	0.996386216969489	0	lncRNA	18440-1_{1..709}	lnc-HEXA-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HEXA-3:2	chr15	 72766216	 72766924	-	lnc-HEXA-3	lnc-HEXA-3:2	XLOC_011523	linc-HEXA-1	ARIH1	NA	chr15:72766667-72776615	inter
CUST_13007_PI429285431	6.1112585	P	7.323128	P	0.431708828048374	0	lncRNA	14633-2_{3001..5140}	lnc-ADARB1-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADARB1-3:10	chr21	 46718936	 46721075	+	lnc-ADARB1-3	lnc-ADARB1-3:10	XLOC_013981	linc-COL18A1-4	POFUT2	NA	chr21:46705936-46707811	inter
CUST_21909_PI429285431	0.8929277	A	0.8955445	A	0.998187816448965	0	lncRNA	23518-1_{1..1299}	lnc-XXbac-B461K10.4.1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XXbac-B461K10.4.1-3:3	chr22	 18685102	 18686400	-	lnc-XXbac-B461K10.4.1-3	lnc-XXbac-B461K10.4.1-3:3	ENSG00000187979.3	AC008079.9	NA	NA	NA	inter
CUST_22730_PI429285431	0.87676114	A	1.16066	A	0.821368280679703	0	lncRNA	24314-1_{1..394}	lnc-ADAMTS12-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ADAMTS12-3:2	chr5	 33049341	 33049734	-	lnc-ADAMTS12-3	lnc-ADAMTS12-3:2	ENSG00000250697.1	CTD-2066L21.3	NA	NA	NA	inter
CUST_42438_PI429285431	2.9925423	A	3.485768	P	0.710434870107687	0	lncRNA	45163-1_{1..159}	ENST00000515984 ncrna:snoRNA chromosome:GRCh37:6:16148518:16148676:-1 gene:ENSG00000251793 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515984 ncrna:snoRNA chromosome:GRCh37:6:16148518:16148676:-1 gene:ENSG00000251793 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	 16148518	 16148676	-	ENSG00000251793	ENST00000515984	NA	NA	MYLIP	NA	chr6:16138518-16148479	inter
LNCA_21_P0005438	1.0430712	A	0.88628334	A	1.11480228141754	0	lncRNA	TCONS_00013611	NA	NA	NA	NA	XLOC_006277	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006277), lincRNA [TCONS_00013611]"	chr7:141923093-141923152	hs|7q34	Agilent_HUMAN_G3V2	TCONS_00013611	TCONS_00013611	chr7	141923093	141923152	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18572_PI429285431	2.3069923	A	3.0692766	P	0.589562104546342	0	lncRNA	20280-1_{1..402}	lnc-OR4F16-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-OR4F16-6:1	chr1	   752753	   753154	-	lnc-OR4F16-6	lnc-OR4F16-6:1	ENSG00000240453	RP11-206L10.10	NA	NA	NA	inter
CUST_4383_PI429285431	3.611734	P	3.9738936	P	0.777999104640015	0	lncRNA	4334-1_{1..791}	"transcript_id ""ENST00000551928.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551928.1"" | genecode_v17"	chr12	 93484298	 93485088	+	ENSG00000257746.1	ENST00000551928.1	RP11-202G11.2	RP11-202G11.2-001	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40"	NA	inter
CUST_32134_PI429285431	0.8904408	A	0.89795566	A	0.994804638794636	0	lncRNA	33834-1_{1..508}	n338701|AF116622|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1121|NULL|-1.2731000|-0.4511216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338701|AF116622|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1121|NULL|-1.2731000|-0.4511216	chr2	 24749078	 24749585	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12784_PI429285431	0.905265	A	0.9098384	A	0.996834979953897	0	lncRNA	14410-1_{1..929}	lnc-TFAP2D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TFAP2D-1:1	chr6	 50488696	 50489624	+	lnc-TFAP2D-1	lnc-TFAP2D-1:1	XLOC_005316	linc-TFAP2D-1	NA	NA	NA	inter
CUST_37752_PI429285431	5.296935	P	5.502178	P	0.867392575782739	0	lncRNA	38848-1_{1..200}	n346259|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1809|NULL|-1.3111800|-0.3130444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346259|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1809|NULL|-1.3111800|-0.3130444	chr16	 21495786	 21495985	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013669	5.0011315	P	5.3755164	P	0.771434247316835	0	lncRNA	THC2689191	NA	NA	NA	NA	XLOC_l2_015288	NA	NA	THC2689191	NA	"BROAD Institute lincRNA (XLOC_l2_015288), lincRNA [TCONS_l2_00029473]"	chr9:095854334-095854275	hs|9q22.31	Agilent_HUMAN_G3V2	THC2689191	THC2689191	chr9	 95854275	 95854334	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17850_PI429285431	3.3407824	P	4.4170423	P	0.474256713024147	0	lncRNA	19585-1_{1..1240}	lnc-HEATR2-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HEATR2-3:5	chr7	   564002	   565241	+	lnc-HEATR2-3	lnc-HEATR2-3:5	XLOC_005958	linc-HEATR2-2	PDGFA	NA	chr7:554002-559481	inter
CUST_23851_PI429285431	0.91194504	A	3.310033	P	0.189715839441248	0	lncRNA	25414-1_{1..589}	lnc-CCDC33-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC33-1:2	chr15	 74505609	 74506197	+	lnc-CCDC33-1	lnc-CCDC33-1:2	ENSG00000259264.1	RP11-60L3.1	STRA6	"hg19_refFlat_STRA6:range=chr15:74472421-745017955'pad=0,hg19_refFlat_STRA6:range=chr15:74472421-745017955'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00chr15:74495609-74502046"	NA	inter
CUST_23072_PI429285431	1.8156636	A	1.5610147	A	1.19304536343707	0	lncRNA	24643-1_{1..815}	lnc-TMEM99-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM99-4:1	chr17	 39131749	 39132563	+	lnc-TMEM99-4	lnc-TMEM99-4:1	ENSG00000234477.1	AC004231.2	KRT40	NA	chr17:39133968-39142178	inter
CUST_25846_PI429285431	0.88436896	A	0.88493097	A	0.999610520220003	0	lncRNA	27366-1_{1..743}	lnc-FAM26E-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM26E-1:1	chr6	116817752	116818494	+	lnc-FAM26E-1	lnc-FAM26E-1:1	ENSG00000234117.1	RP11-259P20.1	BET3L	"hg19_refFlat_BET3L:range=chr6:116818117-1168666775'pad=0,hg19_refFlat_BET3L:range=chr6:116818117-1168666775'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00chr6:116817646-116828255"	NA	inner
CUST_9431_PI429285431	0.885782	A	0.88341737	A	1.00164038057225	0	lncRNA	10937-1_{1..924}	lnc-ENPP6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENPP6-2:1	chr4	185214702	185215625	-	lnc-ENPP6-2	lnc-ENPP6-2:1	XLOC_004203	linc-ENPP6-4	LOC391722	NA	chr4:185220282-185225360	inter
CUST_39281_PI429285431	1.6857227	A	2.021638	A	0.792281324052411	0	lncRNA	40253-1_{1..2366}	n386256|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fjy.2||3.4286000|-0.2268168	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386256|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fjy.2||3.4286000|-0.2268168	chr2	111132686	111135051	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZBTB45:range=chr19:59025421-590290405'pad=0,hg19_refFlat_ZBTB45:range=chr19:59025421-590290405'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20"	NA	inter
CUST_47449_PI429285431	6.911497	P	7.443392	P	0.69164565095816	0	lncRNA	51481-1_{1..1301}	"gi|224451065|ref|NR_027052.1| Homo sapiens THAP7 antisense RNA 1 (THAP7-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224451065|ref|NR_027052.1| Homo sapiens THAP7 antisense RNA 1 (THAP7-AS1), transcript variant 2, non-coding RNA"	Chr22	 21356211	 21357511	+	439931	NR_027052.1	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBA3C:range=chr13:19748003-197558875'pad=0,hg19_refFlat_TUBA3C:range=chr13:19748003-197558875'pad=0 3'pad=0 strand=- repeatMasking=none,-94.70;hg19_refFlat_TUBA3D:range=chr2:132233773-1322404215'pad=0,hg19_refFlat_TUBA3D:range=chr2:132233773-1322404215'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_TUBA3E:range=chr2:130949404-1309559335'pad=0,hg19_refFlat_TUBA3E:range=chr2:130949404-1309559335'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20"	NA	inter
CUST_45092_PI429285431	9.355422	P	11.42465	P	0.238286975054728	0	lncRNA	49576-1_{1..863}	"gi|251823861|ref|NR_001296.3| Homo sapiens protease, serine, 3 pseudogene 2 (PRSS3P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|251823861|ref|NR_001296.3| Homo sapiens protease, serine, 3 pseudogene 2 (PRSS3P2), non-coding RNA"	NA	NA	NA	NA	NA	NR_001296.3	NA	NA	NA	NA	NA	Unknown
CUST_40749_PI429285431	5.4896526	P	4.958013	P	1.44557113095968	0	lncRNA	41477-1_{1..1497}	n410459|NR_037602|lncRNA|Homosapiens||RefGeneNoncode|NR_037602||-1.0366700|-0.3423080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410459|NR_037602|lncRNA|Homosapiens||RefGeneNoncode|NR_037602||-1.0366700|-0.3423080	chr15	 93426525	 93428021	+	NA	NA	NA	NA	CHD2	NA	chr15:93443551-93451977	inter
CUST_43260_PI429285431	5.180589	P	3.7963557	P	2.61033198126324	0	lncRNA	48078-1_{1..2351}	ENST00000602663 havana:sense_intronic chromosome:GRCh37:15:30780166:30782516:1 gene:ENSG00000270055 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602663 havana:sense_intronic chromosome:GRCh37:15:30780166:30782516:1 gene:ENSG00000270055 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr15	 30780166	 30782516	+	ENSG00000270055	ENST00000602663	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40"	NA	inter
CUST_35280_PI429285431	1.1147153	A	1.2353956	A	0.919753840243066	0	lncRNA	36682-1_{1..1779}	n342295|BC047723|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4787|NULL|-1.0901400|-0.2748410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342295|BC047723|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4787|NULL|-1.0901400|-0.2748410	chr1	113499050	113500828	+	NA	NA	NA	NA	SLC16A1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80chr1:113489050-113498975"	NA	inter
LNCA_21_P0010354	1.93537	A	2.047109	A	0.925471841313456	0	lncRNA	ENST00000416995	NA	NA	NA	NA	XLOC_014212	NA	ENST00000416995	NA	NA	"BROAD Institute lincRNA (XLOC_014212), lincRNA [TCONS_00029413]"	chr22:32369402-32369461	hs|22q12.3	Agilent_HUMAN_G3V2	ENST00000416995	ENST00000416995	chr22	 32369402	 32369461	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010287	10.970274	P	11.307322	P	0.791659526077812	0	lncRNA	TCONS_00029153	NA	NA	NA	NA	XLOC_014094	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014094), lincRNA [TCONS_00029153]"	chr21:44071874-44071815	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029153	TCONS_00029153	chr21	 44071815	 44071874	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31403_PI429285431	5.3809805	P	5.742574	P	0.77830444409245	0	lncRNA	33178-1_{1..383}	n337870|AF108756|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|253|NULL|1.5245600|-0.1527517	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337870|AF108756|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|253|NULL|1.5245600|-0.1527517	chrX	137939673	137940055	-	NA	NA	NA	NA	FGF13	NA	chrX:137929673-138287185	inner
CUST_16538_PI429285431	1.1591234	A	2.497044	A	0.395590421663028	0	lncRNA	18238-1_{1..618}	lnc-AC006372.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC006372.1-1:3	chr7	157308530	157309147	+	lnc-AC006372.1-1	lnc-AC006372.1-1:3	XLOC_006316	linc-WDR60-3	NA	NA	NA	inter
LNCA_21_P0007342	1.7690928	A	1.7467884	A	1.01558035962917	0	lncRNA	TCONS_00019619	NA	NA	NA	NA	XLOC_009418	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009418), lincRNA [TCONS_00019619]"	chr11:38654034-38653975	hs|11p12	Agilent_HUMAN_G3V2	TCONS_00019619	TCONS_00019619	chr11	 38653975	 38654034	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17658_PI429285431	2.541963	A	2.3106203	A	1.17392700159035	0	lncRNA	19387-1_{1..583}	lnc-TNP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNP1-1:2	chr2	217719692	217720274	-	lnc-TNP1-1	lnc-TNP1-1:2	XLOC_002485	linc-IGFBP5	TNP1	NA	chr2:217724181-217724782	inter
CUST_31844_PI429285431	5.846561	P	5.9447694	P	0.93419239129599	0	lncRNA	33577-2_{3001..4095}	n338391|AK123435|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|787|NULL|-1.1443300|-0.3730624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338391|AK123435|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|787|NULL|-1.1443300|-0.3730624	chr1	179073802	179074896	-	NA	NA	NA	NA	ABL2	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10chr1:179068462-179084885"	NA	inner
CUST_34175_PI429285431	1.0213057	A	1.0823932	A	0.958541300837448	0	lncRNA	35691-2_{3001..3237}	n341023|AK024304|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3489|NULL|1.5363700|-0.2087442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341023|AK024304|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3489|NULL|1.5363700|-0.2087442	chr11	 45252367	 45252603	+	NA	NA	NA	NA	PRDM11	NA	chr11:45239367-45246903	inner
CUST_26035_PI429285431	5.095514	P	4.001466	P	2.13472169936211	0	lncRNA	27552-2_{3001..4998}	lnc-SEC16B.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC16B.1-2:3	chr1	177994575	177996572	-	lnc-SEC16B.1-2	lnc-SEC16B.1-2:3	ENSG00000254154.3	SEC16B	NA	NA	NA	inter
CUST_21406_PI429285431	2.7112694	A	1.3207223	A	2.62178085311495	0	lncRNA	23027-1_{1..546}	lnc-TRRAP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRRAP-1:2	chr7	 98645278	 98645823	+	lnc-TRRAP-1	lnc-TRRAP-1:2	ENSG00000242687.2	AC004893.11	SMURF1	"hg19_refFlat_SMURF1:range=chr7:98628207-987414035'pad=0,hg19_refFlat_SMURF1:range=chr7:98628207-987414035'pad=0 3'pad=0 strand=- repeatMasking=none,-100.20chr7:98635278-98655710"	NA	inner
CUST_29474_PI429285431	6.2818995	P	7.3974943	P	0.461500846748006	0	lncRNA	31232-1_{1..244}	n332891|AF086057|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066936|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066936|-0.8383500|-0.1857887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332891|AF086057|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066936|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066936|-0.8383500|-0.1857887	chr16	  3023249	  3023492	+	NA	NA	NA	NA	KREMEN2	NA	chr16:3014217-3018381	inner
CUST_2239_PI429285431	1.0143749	A	0.9202875	A	1.06738999970274	0	lncRNA	2231-1_{1..562}	"transcript_id ""ENST00000502301.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502301.1"" | genecode_v17"	chr5	 87836546	 87837107	-	ENSG00000245526.3	ENST00000502301.1	LINC00461	LINC00461-010	NA	NA	NA	inter
CUST_8131_PI429285431	0.88403624	A	0.89754075	A	0.990683061128282	0	lncRNA	9735-1_{1..3000}	lnc-CDH6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDH6-3:1	chr5	 29073007	 29076006	+	lnc-CDH6-3	lnc-CDH6-3:1	ENSG00000249322	ENST00000509556	NA	NA	NA	inter
CUST_18594_PI429285431	1.3422871	A	1.2014736	A	1.10252662808999	0	lncRNA	20301-1_{1..2179}	lnc-SYT10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SYT10-2:1	chr12	 34199028	 34201206	-	lnc-SYT10-2	lnc-SYT10-2:1	ENSG00000245482	RP11-847H18.2	NA	"hg19_refFlat_ALG10B:range=chr12:38710696-387150155'pad=0,hg19_refFlat_ALG10B:range=chr12:38710696-387150155'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_ALG10:range=chr12:34175535-341798505'pad=0,hg19_refFlat_ALG10:range=chr12:34175535-341798505'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.10"	NA	inter
CUST_29026_PI429285431	0.9118691	A	0.9157907	A	0.997285445102145	0	lncRNA	30755-1_{1..714}	n326516|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029413|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029413|-1.3712000|-0.4071349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326516|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029413|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029413|-1.3712000|-0.4071349	chr1	 95748310	 95749023	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4277_PI429285431	1.9578155	A	1.4593326	A	1.41272719439326	0	lncRNA	4233-1_{1..1975}	"transcript_id ""ENST00000550678.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550678.1"" | genecode_v17"	chr12	 58959743	 58961717	-	ENSG00000257259.1	ENST00000550678.1	RP11-767I20.1	RP11-767I20.1-001	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10"	NA	inter
CUST_51342_PI429285431	2.8872843	A	3.0524626	A	0.891818294442709	0	lncRNA	54942-1_{1..873}	hg19_lincRNAsTranscripts_TCONS_l2_00008733 range=chr15:74509394-74513717 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008733 range=chr15:74509394-74513717 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 74509394	 74510266	+	NA	NA	NA	NA	STRA6	NA	chr15:74499394-74502046	inter
CUST_40207_PI429285431	4.314661	P	4.0872855	P	1.17070330869545	0	lncRNA	41036-2_{3001..4620}	n408037|NR_027822|lncRNA|Homosapiens||RefGeneNoncode|NR_027822||-0.2538840|-0.2061593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408037|NR_027822|lncRNA|Homosapiens||RefGeneNoncode|NR_027822||-0.2538840|-0.2061593	chr6	  1523254	  1524873	+	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50"	NA	inter
CUST_1704_PI429285431	0.9097709	A	0.90360963	A	1.00427979922288	0	lncRNA	1688-1_{1..457}	"transcript_id ""ENST00000514339.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514339.1"" | genecode_v17"	chr4	 14136560	 14137016	+	ENSG00000251679.1	ENST00000514339.1	RP11-669M16.2	RP11-669M16.2-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
CUST_39326_PI429285431	0.8985856	A	0.9035821	A	0.996542680452558	0	lncRNA	40292-1_{1..624}	n386381|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010iwo.1||-0.7404650|-0.3989042	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386381|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010iwo.1||-0.7404650|-0.3989042	chr5	 60958985	 60959608	-	NA	NA	NA	NA	C5orf64	NA	chr5:60948985-60993841	inner
CUST_15739_PI429285431	0.9071069	A	0.9278461	A	0.985727513541714	0	lncRNA	17425-1_{1..619}	lnc-SLC35G4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC35G4-2:1	chr18	 11491562	 11492180	+	lnc-SLC35G4-2	lnc-SLC35G4-2:1	XLOC_012627	linc-GNAL-2	NA	NA	NA	inter
CUST_42999_PI429285431	6.607318	P	6.921346	P	0.804392759038374	0	lncRNA	46162-1_{1..70}	ENST00000384693 ncrna:snoRNA chromosome:GRCh37:11:62621135:62621204:-1 gene:ENSG00000207424 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384693 ncrna:snoRNA chromosome:GRCh37:11:62621135:62621204:-1 gene:ENSG00000207424 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 62621135	 62621204	-	ENSG00000207424	ENST00000384693	NA	NA	SLC3A2	NA	chr11:62623484-62631204	inter
CUST_4391_PI429285431	1.3060815	A	1.3429731	A	0.97475286829683	0	lncRNA	4342-1_{1..521}	"transcript_id ""ENST00000548344.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548344.1"" | genecode_v17"	chr12	 98506792	 98507312	-	ENSG00000258312.1	ENST00000548344.1	RP11-690J15.1	RP11-690J15.1-001	NA	NA	NA	inter
CUST_10588_PI429285431	0.88772213	A	1.550744	A	0.631554057041015	0	lncRNA	12118-1_{1..345}	lnc-CLCN3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLCN3-4:1	chr4	171194810	171195154	+	lnc-CLCN3-4	lnc-CLCN3-4:1	XLOC_003775	linc-GALNTL6-4	NA	NA	NA	inter
CUST_21618_PI429285431	3.932944	P	4.542778	P	0.655272094792486	0	lncRNA	23231-1_{1..766}	lnc-RP11-116D17.1.1-13:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-116D17.1.1-13:3	chr12	114847271	114848036	+	lnc-RP11-116D17.1.1-13	lnc-RP11-116D17.1.1-13:3	ENSG00000255399.1	RP11-385N17.1	TBX5	NA	chr12:114837271-114846247	inter
CUST_4849_PI429285431	0.9004744	A	0.91301346	A	0.991346247065001	0	lncRNA	4792-1_{1..631}	"transcript_id ""ENST00000556996.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556996.1"" | genecode_v17"	chr14	 60017890	 60018520	-	ENSG00000258607.1	ENST00000556996.1	RP11-701B16.3	RP11-701B16.3-002	C14orf38	NA	chr14:60007890-60041208	inner
CUST_43838_PI429285431	6.6773777	P	6.6503897	P	1.01888272175325	0	lncRNA	48562-1_{1..1058}	"gi|300795646|ref|NR_034099.1| Homo sapiens uncharacterized LOC388948 (LOC388948), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300795646|ref|NR_034099.1| Homo sapiens uncharacterized LOC388948 (LOC388948), non-coding RNA"	Chr2	 47043807	 47044864	+	388948	NR_034099.1	NA	NA	NA	NA	NA	inter
CUST_21400_PI429285431	0.8974916	A	0.90537053	A	0.994553627444483	0	lncRNA	23021-1_{1..455}	lnc-CNTLN-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CNTLN-3:1	chr9	 16626156	 16626610	+	lnc-CNTLN-3	lnc-CNTLN-3:1	ENSG00000230694.1	RP11-62F24.1	BNC2	NA	chr9:16616156-16636388	inner
CUST_36908_PI429285431	0.9015962	A	0.92173076	A	0.986140722972426	0	lncRNA	38068-1_{1..441}	n345381|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_930|NULL|-1.3084300|-0.3111760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345381|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_930|NULL|-1.3084300|-0.3111760	chr20	  1416425	  1416865	-	NA	NA	NA	NA	NSFL1C	NA	chr20:1422807-1426866	inter
CUST_30104_PI429285431	5.524701	P	4.773125	P	1.68363102476129	0	lncRNA	31876-1_{1..523}	n334647|AB114414|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000242351|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000242351|1.7915100|-0.2853270	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334647|AB114414|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000242351|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000242351|1.7915100|-0.2853270	chr3	 25760877	 25761399	-	NA	NA	NA	NA	NGLY1	NA	chr3:25750877-25771779	inner
CUST_10682_PI429285431	0.9062549	A	1.0600469	A	0.898884713625445	0	lncRNA	12215-1_{1..557}	lnc-KIAA1919-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1919-1:2	chr6	111599616	111600172	+	lnc-KIAA1919-1	lnc-KIAA1919-1:2	XLOC_005426	linc-WISP3-3	KIAA1919	NA	chr6:111589616-111590263	inter
CUST_34477_PI429285431	0.8925658	A	0.89437205	A	0.998748786326495	0	lncRNA	35945-1_{1..792}	n341353|CR602570|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3822|NULL|-0.8240320|-0.2080686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341353|CR602570|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3822|NULL|-0.8240320|-0.2080686	chr7	147368770	147369561	+	NA	NA	NA	NA	CNTNAP2	NA	chr7:147358770-147380236	inner
CUST_38120_PI429285431	6.7070866	P	6.91878	P	0.863523054067235	0	lncRNA	39194-1_{1..773}	n381225|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001eks.2||-0.9899220|-0.1641371	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n381225|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001eks.2||-0.9899220|-0.1641371	chr1	144300513	144301285	-	NA	NA	NA	NA	LOC730256	NA	chr1:144339763-144340584	inter
CUST_37305_PI429285431	0.9449995	A	0.89643526	A	1.03423514793808	0	lncRNA	38412-2_{3001..3104}	n345747|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1296|NULL|-1.3347700|-0.3471780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345747|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1296|NULL|-1.3347700|-0.3471780	chr14	 54155166	 54155269	-	NA	NA	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40"	NA	inter
CUST_10107_PI429285431	7.1938105	P	7.3594756	P	0.891517424267437	0	lncRNA	11631-1_{1..372}	lnc-TMEM70-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM70-1:4	chr8	 74796868	 74797239	+	lnc-TMEM70-1	lnc-TMEM70-1:4	XLOC_006844	linc-TMEM70-2	UBE2W	NA	chr8:74786868-74791110	inter
CUST_39363_PI429285431	3.1382427	A	3.7407565	P	0.65860537901985	0	lncRNA	40327-1_{1..1060}	n386464|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lrq.2||1.2319800|-0.1856307	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386464|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lrq.2||1.2319800|-0.1856307	chr8	  8086091	  8087150	+	NA	NA	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80"	NA	inter
CUST_6844_PI429285431	3.3338919	P	3.5312114	P	0.872169533259488	0	lncRNA	6792-1_{1..241}	"transcript_id ""ENST00000449923.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449923.1"" | genecode_v17"	chr21	 30742340	 30742580	-	ENSG00000232118.1	ENST00000449923.1	BACH1-AS1	BACH1-AS1-001	BACH1	NA	chr21:30732340-30734217	inter
CUST_3394_PI429285431	7.222498	P	5.1992035	P	4.0651103057499	0	lncRNA	3367-1_{1..2835}	"transcript_id ""ENST00000588314.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588314.1"" | genecode_v17"	chr9	 37084987	 37087821	+	ENSG00000233137.2	ENST00000588314.1	RP11-220I1.1	RP11-220I1.1-007	NA	NA	NA	inter
CUST_9113_PI429285431	0.9108802	A	0.9197787	A	0.993851012693233	0	lncRNA	10633-1_{1..2883}	lnc-ABT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABT1-2:1	chr6	 26572256	 26575138	+	lnc-ABT1-2	lnc-ABT1-2:1	ENSG00000244922	XLOC_005212	NA	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-22.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50"	NA	inter
LNCA_21_P0010109	0.8931998	A	0.97421044	A	0.945395144354538	0	lncRNA	TCONS_00028620	NA	NA	NA	NA	XLOC_013652	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013652), lincRNA [TCONS_00028620]"	chr20:11851328-11849724	hs|20p12.2	Agilent_HUMAN_G3V2	TCONS_00028620	TCONS_00028620	chr20	 11849724	 11851328	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45240_PI429285431	8.262682	P	8.098353	P	1.12064474296076	0	lncRNA	49695-1_{1..3000}	"gi|341915433|ref|XR_132545.1| PREDICTED: Homo sapiens uncharacterized LOC286149 (LOC286149), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|341915433|ref|XR_132545.1| PREDICTED: Homo sapiens uncharacterized LOC286149 (LOC286149), misc_RNA"	NA	NA	NA	NA	NA	XR_132545.1	NA	NA	NA	NA	NA	Unknown
CUST_40348_PI429285431	4.303926	P	4.2736845	P	1.02118305238275	0	lncRNA	41151-1_{1..3000}	n409066|NR_033127|lncRNA|Homosapiens||RefGeneNoncode|NR_033127||11.0240000|-0.2491357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409066|NR_033127|lncRNA|Homosapiens||RefGeneNoncode|NR_033127||11.0240000|-0.2491357	chrX	110924397	110927396	+	NA	NA	NA	NA	ALG13	NA	chrX:110924346-111003877	inner
CUST_29755_PI429285431	5.2786655	P	4.8125696	P	1.38136626839592	0	lncRNA	31517-1_{1..280}	n333440|BC017846|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000089426|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000089426|1.1718100|-0.2874083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333440|BC017846|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000089426|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000089426|1.1718100|-0.2874083	chr15	 43784470	 43784749	-	NA	NA	NA	NA	TP53BP1	NA	chr15:43774470-43795319	inner
CUST_18736_PI429285431	7.715	P	7.875715	P	0.894581606192985	0	lncRNA	20433-1_{1..2311}	lnc-S100P-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-S100P-2:1	chr4	  6676720	  6679030	+	lnc-S100P-2	lnc-S100P-2:1	ENSG00000170846	AC093323.3	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80"	NA	inter
CUST_6181_PI429285431	1.7563298	A	1.6500272	A	1.07646588588298	0	lncRNA	6106-1_{1..3000}	"transcript_id ""ENST00000578152.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000578152.1"" | genecode_v17"	chr18	 48918412	 48921411	+	ENSG00000227115.2	ENST00000578152.1	RP11-267C16.1	RP11-267C16.1-001	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_1057_PI429285431	6.5418267	P	6.4579372	P	1.05987160179347	0	lncRNA	1047-1_{1..350}	"transcript_id ""ENST00000422649.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422649.1"" | genecode_v17"	chr2	122548068	122548417	+	ENSG00000224655.1	ENST00000422649.1	AC018737.3	AC018737.3-004	NA	NA	NA	inter
CUST_23391_PI429285431	0.8847974	A	0.8837609	A	1.00071870519755	0	lncRNA	24959-1_{1..578}	lnc-DTHD1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-DTHD1-5:3	chr4	 33981362	 33981939	+	lnc-DTHD1-5	lnc-DTHD1-5:3	ENSG00000250723.1	RP11-79E3.2	NA	NA	NA	inter
CUST_10776_PI429285431	4.634321	P	5.031219	P	0.759489539688481	0	lncRNA	12312-1_{1..3000}	lnc-COL4A2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL4A2-2:1	chr13	110707120	110710119	+	lnc-COL4A2-2	lnc-COL4A2-2:1	XLOC_010496	linc-COL4A2-2	NA	NA	NA	inter
CUST_35994_PI429285431	0.90195805	A	0.9030856	A	0.999218747233543	0	lncRNA	37330-5_{12001..14988}	n344605|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_153|NULL|-1.5217100|-0.2534201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344605|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_153|NULL|-1.5217100|-0.2534201	chr2	239450308	239453295	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00"	NA	inter
CUST_46184_PI429285431	4.176527	P	3.4707491	P	1.63102387450424	0	lncRNA	50430-1_{1..2211}	"gi|261278290|ref|NR_029383.1| Homo sapiens PAN3 antisense RNA 1 (PAN3-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|261278290|ref|NR_029383.1| Homo sapiens PAN3 antisense RNA 1 (PAN3-AS1), non-coding RNA"	Chr13	 28710980	 28713190	-	100288730	NR_029383.1	NA	NA	NA	"hg19_refFlat_PAN3:range=chr13:28712795-288666595'pad=0,hg19_refFlat_PAN3:range=chr13:28712795-288666595'pad=0 3'pad=0 strand=+ repeatMasking=none,-113.00"	NA	inter
CUST_45671_PI429285431	0.88083637	A	0.9767066	A	0.9357076606785	0	lncRNA	50047-1_{1..976}	"gi|345842333|ref|NR_045118.1| Homo sapiens uncharacterized LOC100289509 (LOC100289509), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|345842333|ref|NR_045118.1| Homo sapiens uncharacterized LOC100289509 (LOC100289509), non-coding RNA"	Chr10	103578825	103579800	+	100289509	NR_045118.1	NA	NA	NA	"hg19_refFlat_KCNIP2:range=chr10:103587110-1036033255'pad=0,hg19_refFlat_KCNIP2:range=chr10:103587110-1036033255'pad=0 3'pad=0 strand=- repeatMasking=none,-96.20;hg19_refFlat_KCNIP2:range=chr10:103587110-1035995975'pad=0,hg19_refFlat_KCNIP2:range=chr10:103587110-1035995975'pad=0 3'pad=0 strand=- repeatMasking=none,-96.20;hg19_refFlat_KCNIP2:range=chr10:103587398-1036033255'pad=0,hg19_refFlat_KCNIP2:range=chr10:103587398-1036033255'pad=0 3'pad=0 strand=- repeatMasking=none,-96.20"	NA	inter
CUST_37279_PI429285431	5.6291966	P	5.287142	P	1.26756049301328	0	lncRNA	38388-1_{1..1064}	n345720|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1269|NULL|-1.3417600|-0.1307775	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345720|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1269|NULL|-1.3417600|-0.1307775	chr10	102729267	102730330	-	NA	NA	NA	NA	FAM178A	NA	chr10:102719267-102724891	inter
CUST_11960_PI429285431	3.1286497	P	3.7785072	P	0.637343263158451	0	lncRNA	13539-1_{1..355}	lnc-ZNF516-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF516-10:1	chr18	 73650058	 73650412	-	lnc-ZNF516-10	lnc-ZNF516-10:1	XLOC_012888	linc-C18orf62-3	NA	NA	NA	inter
CUST_6360_PI429285431	1.2231474	A	1.491744	A	0.830126669485385	0	lncRNA	6285-1_{1..580}	"transcript_id ""ENST00000592886.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592886.1"" | genecode_v17"	chr19	 16130531	 16131110	+	ENSG00000267527.1	ENST00000592886.1	AC004790.3	AC004790.3-001	NA	NA	NA	inter
CUST_7625_PI429285431	5.403755	P	5.6500273	P	0.843071970475419	0	lncRNA	9257-1_{1..689}	lnc-TRPV2-1:26	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRPV2-1:26	chr17	 16367033	 16367721	+	lnc-TRPV2-1	lnc-TRPV2-1:26	ENSG00000175061	NCRNA00188	C17orf76	NA	chr17:16357033-16377300	inner
CUST_26664_PI429285431	5.4368954	P	5.769875	P	0.793895156690551	0	lncRNA	28164-1_{1..427}	lnc-BCAR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BCAR1-1:1	chr16	 75358564	 75358990	-	lnc-BCAR1-1	lnc-BCAR1-1:1	ENSG00000259999.1	RP11-252K23.1	CFDP1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30chr16:75348564-75368946"	NA	inner
CUST_49889_PI429285431	10.238553	P	10.1986475	P	1.02804648492969	0	lncRNA	53638-5_{12001..12085}	hg19_lincRNAsTranscripts_TCONS_l2_00026700 range=chr7:76684553-76702721 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026700 range=chr7:76684553-76702721 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 76696553	 76696637	-	NA	NA	NA	NA	LOC100505767	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_NSL1:range=chr1:212912886-2129651055'pad=0,hg19_refFlat_NSL1:range=chr1:212912886-2129651055'pad=0 3'pad=0 strand=- repeatMasking=none,-58.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.41;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10chr7:76682095-76689829"	NA	inter
CUST_3885_PI429285431	1.1533874	A	0.88100505	A	1.20780064622768	0	lncRNA	3854-1_{1..575}	"transcript_id ""ENST00000533942.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533942.1"" | genecode_v17"	chr11	 25756356	 25756930	+	ENSG00000254456.1	ENST00000533942.1	RP11-405K6.1	RP11-405K6.1-002	NA	NA	NA	inter
LNCA_21_P0003083	8.6783	P	8.513695	P	1.12085915247064	0	lncRNA	TCONS_00006356	NA	NA	NA	NA	XLOC_002975	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002975), lincRNA [TCONS_00006356]"	chr3:193809661-193809720	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00006356	TCONS_00006356	chr3	193809661	193809720	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1689_PI429285431	1.8145583	A	0.9124715	A	1.86876712508573	0	lncRNA	1672-1_{1..555}	"transcript_id ""ENST00000510095.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510095.1"" | genecode_v17"	chr4	 11627338	 11627892	+	ENSG00000249631.1	ENST00000510095.1	RP11-281P23.2	RP11-281P23.2-006	NA	NA	NA	inter
CUST_3039_PI429285431	1.1314366	A	1.3424076	A	0.863955553828065	0	lncRNA	3018-1_{1..607}	"transcript_id ""ENST00000522755.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522755.1"" | genecode_v17"	chr8	 21155717	 21156323	+	ENSG00000254334.1	ENST00000522755.1	RP11-24P4.1	RP11-24P4.1-002	NA	NA	NA	inter
CUST_19335_PI429285431	1.4029447	A	1.8804018	A	0.718242486009045	0	lncRNA	21001-1_{1..503}	lnc-KLHL24-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL24-1:1	chr3	183269841	183270343	+	lnc-KLHL24-1	lnc-KLHL24-1:1	ENSG00000242522.1	KLHL6-AS1	KLHL6	NA	chr3:183259841-183273499	inner
CUST_36571_PI429285431	5.487413	P	6.612679	P	0.458417492099204	0	lncRNA	37766-1_{1..2946}	n345068|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_617|NULL|-1.6708400|-0.1708863	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345068|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_617|NULL|-1.6708400|-0.1708863	chrX	 64295723	 64298668	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29821_PI429285431	8.71897	P	6.395009	P	5.0070504784925	0	lncRNA	31584-1_{1..246}	n333541|D10518|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000100426|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000100426|0.6199700|-0.3613929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333541|D10518|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000100426|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000100426|0.6199700|-0.3613929	chr5	 74014116	 74014361	+	NA	NA	NA	NA	GFM2	NA	chr5:74017031-74024796	inner
CUST_34182_PI429285431	5.772247	P	5.916746	P	0.904693492974721	0	lncRNA	35698-1_{1..831}	n341031|BC068077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3497|NULL|-0.7269970|-0.2779239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341031|BC068077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3497|NULL|-0.7269970|-0.2779239	chr11	 48191598	 48192428	+	NA	NA	NA	NA	PTPRJ	NA	chr11:48181598-48192394	inner
CUST_48516_PI429285431	1.770936	A	1.6984619	A	1.05151840342783	0	lncRNA	52369-1_{1..567}	hg19_lincRNAsTranscripts_TCONS_l2_00015928 range=chr2:114286373-114298793 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015928 range=chr2:114286373-114298793 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	114286373	114286939	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
CUST_30688_PI429285431	0.89683324	A	1.3079281	A	0.752052425161527	0	lncRNA	32470-1_{1..348}	n336178|X92778|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324580|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324580|1.4490100|-0.0899993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336178|X92778|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324580|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324580|1.4490100|-0.0899993	chr14	 22386668	 22387015	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41638_PI429285431	0.88382375	A	0.8888686	A	0.996509283213466	0	lncRNA	43034-1_{1..86}	ENST00000410600 ncrna:miRNA chromosome:GRCh37:X:63005882:63005967:-1 gene:ENSG00000222532 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410600 ncrna:miRNA chromosome:GRCh37:X:63005882:63005967:-1 gene:ENSG00000222532 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 63005882	 63005967	-	ENSG00000222532	ENST00000410600	NA	NA	ARHGEF9	NA	chrX:62995882-63005426	inter
CUST_22168_PI429285431	0.91901493	A	0.92524445	A	0.995691334822897	0	lncRNA	23770-1_{1..403}	lnc-SLC38A8-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC38A8-6:2	chr16	 83431531	 83431933	-	lnc-SLC38A8-6	lnc-SLC38A8-6:2	ENSG00000261410.1	RP11-543N12.1	CDH13	NA	chr16:83421531-83441592	inner
CUST_27648_PI429285431	0.89747345	A	0.90286	A	0.996273289540989	0	lncRNA	29226-1_{1..252}	n324854|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171135|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171135|-0.9171190|-0.3021804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324854|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171135|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171135|-0.9171190|-0.3021804	chr21	 25232615	 25232866	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45673_PI429285431	9.345556	P	9.543516	P	0.871782410142771	0	lncRNA	50048-2_{3001..3416}	"gi|387165116|ref|NR_048560.1| Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) (NFKB2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387165116|ref|NR_048560.1| Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) (NFKB2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_048560.1	NA	NA	NA	NA	NA	Unknown
CUST_8090_PI429285431	9.098833	P	9.178544	P	0.946247179536572	0	lncRNA	9696-1_{1..3000}	lnc-DET1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DET1-1:2	chr15	 89048640	 89051639	-	lnc-DET1-1	lnc-DET1-1:2	ENSG00000248072	XLOC_011568	DET1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr15:89055714-89059018"	NA	inter
CUST_35045_PI429285431	1.3110607	A	1.8596292	A	0.683698184740206	0	lncRNA	36455-2_{3001..4564}	n341990|BC040994|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4471|NULL|0.0460503|-0.4063189	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341990|BC040994|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4471|NULL|0.0460503|-0.4063189	chr12	 97546858	 97548421	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_HHLA3:range=chr1:70820635-708322015'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708322015'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_HHLA3:range=chr1:70820635-708322145'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708322145'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90"	NA	inter
LNCA_21_P0009472	2.5993772	A	2.0377405	A	1.47594268644713	0	lncRNA	THC2781676	NA	NA	NA	NA	XLOC_012658	NA	NA	THC2781676	NA	"BROAD Institute lincRNA (XLOC_012658), lincRNA [TCONS_00026319]"	chr18:032906768-032906827	hs|18q12.2	Agilent_HUMAN_G3V2	THC2781676	THC2781676	chr18	 32906768	 32906827	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48134_PI429285431	5.231076	P	5.603849	P	0.772296640091481	0	lncRNA	52002-1_{1..3000}	"gi|397137326|ref|XR_111226.2| PREDICTED: Homo sapiens uncharacterized LOC403312 (MGC39545), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397137326|ref|XR_111226.2| PREDICTED: Homo sapiens uncharacterized LOC403312 (MGC39545), misc_RNA"	NA	NA	NA	NA	NA	XR_111226.2	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.59;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70"	NA	Unknown
CUST_46725_PI429285431	11.101579	P	10.632756	P	1.38397990922149	0	lncRNA	50879-2_{3001..6000}	"gi|384367971|ref|NR_047571.1| Homo sapiens ankyrin repeat and FYVE domain containing 1 (ANKFY1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384367971|ref|NR_047571.1| Homo sapiens ankyrin repeat and FYVE domain containing 1 (ANKFY1), transcript variant 4, non-coding RNA"	Chr17	  4069665	  4072664	-	51479	NR_047571.1	NA	NA	NA	NA	NA	inter
CUST_19043_PI429285431	10.143516	P	11.254654	P	0.462928728017272	0	lncRNA	20733-1_{1..1685}	lnc-C17orf46-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C17orf46-2:1	chr17	 43298716	 43300400	-	lnc-C17orf46-2	lnc-C17orf46-2:1	ENSG00000246393	AC008105.1	FMNL1	NA	chr17:43299292-43309132	inter
CUST_19931_PI429285431	7.816164	P	7.9136577	P	0.934655297654618	0	lncRNA	21586-1_{1..233}	lnc-GALM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GALM-1:1	chr2	 38829117	 38829349	+	lnc-GALM-1	lnc-GALM-1:1	ENSG00000235586.1	AC011247.3	HNRPLL	NA	chr2:38819117-38830178	inner
CUST_13838_PI429285431	0.90465736	A	0.8992906	A	1.00372688218119	0	lncRNA	15481-1_{1..567}	lnc-CIB4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CIB4-1:1	chr2	 26897246	 26897812	-	lnc-CIB4-1	lnc-CIB4-1:1	XLOC_002027	linc-CIB4	KCNK3	NA	chr2:26901087-26907332	inter
LNCA_19_P00320088	5.8108926	P	5.5815315	P	1.17231567223116	0	lncRNA	ENST00000425963	NA	NA	NA	NA	XLOC_l2_011793	NA	ENST00000425963	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011793), lincRNA [TCONS_l2_00023559]"	chr5:141909585-141909644	hs|5q31.3	Agilent_HUMAN_G3V2	ENST00000425963	ENST00000425963	chr5	141909585	141909644	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26394_PI429285431	1.1436486	A	0.8851567	A	1.19622759193233	0	lncRNA	27901-1_{1..351}	lnc-MAP3K8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP3K8-2:1	chr10	 30918671	 30919021	+	lnc-MAP3K8-2	lnc-MAP3K8-2:1	ENSG00000236181.1	RP11-14C22.5	LYZL2	NA	chr10:30908671-30918647	inter
CUST_9149_PI429285431	1.3945192	A	1.0846462	A	1.23959857365532	0	lncRNA	10668-1_{1..888}	lnc-CAMK1G-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CAMK1G-1:5	chr1	209605549	209606436	+	lnc-CAMK1G-1	lnc-CAMK1G-1:5	ENSG00000230937	CTA-55I10.1	LOC642587	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50chr1:209602168-209605894"	NA	inter
CUST_4047_PI429285431	0.8932334	A	0.91194665	A	0.987112724868746	0	lncRNA	4009-1_{1..486}	"transcript_id ""ENST00000527332.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527332.1"" | genecode_v17"	chr11	 89487150	 89487635	-	ENSG00000254971.1	ENST00000527332.1	RP11-313I2.11	RP11-313I2.11-001	TRIM49	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00chr11:89477150-89498121"	NA	inter
CUST_6585_PI429285431	0.9037251	A	0.9120628	A	0.994237414512168	0	lncRNA	6533-1_{1..337}	"transcript_id ""ENST00000597355.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597355.1"" | genecode_v17"	chr19	 54949192	 54949528	-	ENSG00000269873.1	ENST00000597355.1	CTD-2587H19.3	CTD-2587H19.3-001	TTYH1	NA	chr19:54939192-54947899	inter
CUST_8614_PI429285431	3.736325	P	3.6837938	P	1.03708288442141	0	lncRNA	10167-1_{1..2680}	lnc-FAM43A-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-FAM43A-8:1	chr3	194237800	194240479	+	lnc-FAM43A-8	lnc-FAM43A-8:1	ENSG00000233058	AC046143.7	NA	NA	NA	inter
CUST_43286_PI429285431	7.1252604	P	7.4945526	P	0.7741622150117	0	lncRNA	48104-1_{1..174}	ENST00000558785 havana:sense_intronic chromosome:GRCh37:15:51659574:51661307:1 gene:ENSG00000259194 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000558785 havana:sense_intronic chromosome:GRCh37:15:51659574:51661307:1 gene:ENSG00000259194 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr15	 51659574	 51659747	+	ENSG00000259194	ENST00000558785	NA	NA	GLDN	NA	chr15:51649574-51671307	inner
CUST_3604_PI429285431	0.8961742	A	0.97157896	A	0.94907581254301	0	lncRNA	3574-1_{1..657}	"transcript_id ""ENST00000427341.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427341.1"" | genecode_v17"	chr10	  5658825	  5659481	-	ENSG00000228951.1	ENST00000427341.1	RP11-336A10.4	RP11-336A10.4-001	NA	NA	NA	inter
CUST_50804_PI429285431	5.1145277	P	5.6573954	P	0.686405158408954	0	lncRNA	54456-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00004466 range=chr11:32472909-32488802 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004466 range=chr11:32472909-32488802 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 32475909	 32478908	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80"	NA	inter
CUST_37147_PI429285431	8.22974	P	8.162769	P	1.04751507050675	0	lncRNA	38266-1_{1..643}	n345584|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1133|NULL|-1.5982800|-0.4876132	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345584|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1133|NULL|-1.5982800|-0.4876132	chr3	 31241622	 31242264	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32599_PI429285431	0.89811087	A	0.91416126	A	0.988936374518115	0	lncRNA	34260-1_{1..1910}	n339220|AK124129|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1652|NULL|-1.0731000|-0.1745480	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339220|AK124129|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1652|NULL|-1.0731000|-0.1745480	chr16	 56226525	 56228434	-	NA	NA	NA	NA	GNAO1	NA	chr16:56225251-56238430	inner
CUST_34600_PI429285431	0.89235497	A	0.8998227	A	0.994837137629891	0	lncRNA	36056-2_{3001..4650}	n341482|CR749549|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3952|NULL|-1.1266400|-0.3093562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341482|CR749549|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3952|NULL|-1.1266400|-0.3093562	chr8	 34089512	 34091161	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39606_PI429285431	15.183242	P	14.656746	P	1.44042645345323	0	lncRNA	40548-1_{1..1134}	n387641|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011klk.1||3.3119900|-0.3267163	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387641|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011klk.1||3.3119900|-0.3267163	chr7	102781716	102782849	-	NA	NA	NA	NA	NAPEPLD	"hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10chr7:102771716-102789569"	NA	inner
CUST_34558_PI429285431	0.8996913	A	0.90334755	A	0.997468889297259	0	lncRNA	36018-1_{1..3000}	n341439|BC035264|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3909|NULL|-1.0748000|-0.1902844	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341439|BC035264|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3909|NULL|-1.0748000|-0.1902844	chr13	111462022	111465021	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39369_PI429285431	3.0055368	A	3.3884563	P	0.766884119509741	0	lncRNA	40333-1_{1..1900}	n386482|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mdq.2||0.7051850|-0.1951880	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n386482|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mdq.2||0.7051850|-0.1951880	chr8	128806778	128808677	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60"	NA	inter
CUST_10319_PI429285431	1.0586514	A	1.0069137	A	1.03651263292858	0	lncRNA	11846-2_{3001..4376}	lnc-FOXA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXA2-2:1	chr20	 22562148	 22563523	-	lnc-FOXA2-2	lnc-FOXA2-2:1	XLOC_013684	linc-NKX2-2-6	FOXA2	NA	chr20:22561642-22566101	inter
CUST_48770_PI429285431	1.7081071	A	1.1034911	A	1.52057397045397	0	lncRNA	52607-1_{1..291}	hg19_lincRNAsTranscripts_TCONS_l2_00015027 range=chr2:186946060-186951163 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015027 range=chr2:186946060-186951163 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	186946060	186946350	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002161	1.8258446	A	1.9913156	A	0.891637376972822	0	lncRNA	TCONS_00003553	NA	NA	NA	NA	XLOC_001325	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001325), lincRNA [TCONS_00003553]"	chr2:5434592-5434651	hs|2p25.2	Agilent_HUMAN_G3V2	TCONS_00003553	TCONS_00003553	chr2	  5434592	  5434651	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006682	0.9025668	A	0.9129778	A	0.992809620075015	0	lncRNA	ENST00000434931	NA	NA	NA	NA	XLOC_008506	NA	ENST00000434931	NA	NA	"BROAD Institute lincRNA (XLOC_008506), lincRNA [TCONS_00017837]"	chr10:71451193-71451252	hs|10q22.1	Agilent_HUMAN_G3V2	ENST00000434931	ENST00000434931	chr10	 71451193	 71451252	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35862_PI429285431	0.90417176	M	0.897177	A	1.00486017067335	0	lncRNA	37257-1_{1..3000}	n344529|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_77|NULL|-1.2915300|-0.3016574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344529|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_77|NULL|-1.2915300|-0.3016574	chr2	216476098	216479097	+	NA	NA	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_NDUFA4:range=chr7:10973263-109796845'pad=0,hg19_refFlat_NDUFA4:range=chr7:10973263-109796845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_31070_PI429285431	2.3853292	A	3.6714234	P	0.410059680097039	0	lncRNA	32860-1_{1..432}	n337302|BC131528|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000390491|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000390491|1.6149300|-0.1525216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337302|BC131528|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000390491|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000390491|1.6149300|-0.1525216	chr11	   369808	   370239	+	NA	NA	NA	NA	B4GALNT4	NA	chr11:369795-382117	inner
CUST_24634_PI429285431	0.8940599	A	1.3205576	A	0.744065895931808	0	lncRNA	26183-1_{1..519}	lnc-CDK2AP1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CDK2AP1-1:3	chr12	123744821	123745339	-	lnc-CDK2AP1-1	lnc-CDK2AP1-1:3	ENSG00000235423.3	RP11-282O18.3	C12orf65	NA	chr12:123734821-123742506	inter
CUST_99_PI429285431	9.862942	P	9.935464	P	0.950974129926257	0	lncRNA	91-1_{1..1187}	"transcript_id ""ENST00000417324.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000417324.1"" | genecode_v17"	chr1	    34554	    35740	-	ENSG00000237613.2	ENST00000417324.1	FAM138A	FAM138A-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20"	NA	inter
CUST_38100_PI429285431	1.1020738	A	0.9096526	A	1.1426798076289	0	lncRNA	39176-1_{1..938}	n381130|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001cyv.1||-0.6777050|-0.3765533	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n381130|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001cyv.1||-0.6777050|-0.3765533	chr1	 58326265	 58327202	+	NA	NA	NA	NA	DAB1	NA	chr1:58316265-58338786	inner
CUST_29416_PI429285431	15.875015	P	16.009834	P	0.910784093068495	0	lncRNA	31170-1_{1..485}	n332783|AF043342|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063739_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063739_06|-1.0806600|-0.1353380	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332783|AF043342|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063739_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063739_06|-1.0806600|-0.1353380	chr6	  3054155	  3054639	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29064_PI429285431	0.88801044	A	0.8948594	A	0.995263913481203	0	lncRNA	30792-1_{1..543}	n326554|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001250|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001250|-1.0607400|-0.3975719	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326554|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001250|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001250|-1.0607400|-0.3975719	chr1	 80774027	 80774569	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35574_PI429285431	5.406434	P	5.799926	P	0.761284705862792	0	lncRNA	36989-1_{1..1625}	n342706|CR623805|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5208|NULL|1.4487500|-0.1457389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342706|CR623805|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5208|NULL|1.4487500|-0.1457389	chr5	150400123	150401747	+	NA	NA	NA	NA	GPX3	NA	chr5:150399999-150408554	inner
CUST_10267_PI429285431	0.9067967	A	1.8348845	A	0.525554469207222	0	lncRNA	11792-2_{3001..3568}	lnc-ATOH8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATOH8-2:1	chr2	 86144408	 86144975	+	lnc-ATOH8-2	lnc-ATOH8-2:1	XLOC_001558	linc-PTCD3-2	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
LNCA_21_P0010284	0.88891995	A	1.0738113	A	0.879715325177015	0	lncRNA	TCONS_00029142	NA	NA	NA	NA	XLOC_014082	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014082), lincRNA [TCONS_00029142]"	chr21:40454663-40449708	hs|21q22.2	Agilent_HUMAN_G3V2	TCONS_00029142	TCONS_00029142	chr21	 40449708	 40454663	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010911	1.5287495	A	2.2198071	A	0.619399618696556	0	lncRNA	TCONS_l2_00003844	NA	NA	NA	NA	XLOC_l2_002171	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002171), lincRNA [TCONS_l2_00003844]"	chr10:134350235-134325612	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_l2_00003844	TCONS_l2_00003844	chr10	134325612	134350235	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34452_PI429285431	0.91231805	A	1.3400369	A	0.743436357735193	0	lncRNA	35928-1_{1..2586}	n341328|BC050676|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3797|NULL|0.2905410|-0.3124563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341328|BC050676|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3797|NULL|0.2905410|-0.3124563	chr7	134777114	134779699	-	NA	NA	NA	NA	AGBL3	NA	chr7:134767114-134820530	inner
CUST_43251_PI429285431	6.936108	P	6.7910624	P	1.10576560326687	0	lncRNA	48068-1_{1..559}	ENST00000591936 havana:sense_intronic chromosome:GRCh37:19:56823297:56823855:-1 gene:ENSG00000267298 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000591936 havana:sense_intronic chromosome:GRCh37:19:56823297:56823855:-1 gene:ENSG00000267298 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 56823297	 56823855	-	ENSG00000267298	ENST00000591936	NA	NA	NA	NA	NA	inter
CUST_27313_PI429285431	0.92845124	A	0.9078277	A	1.01439781285791	0	lncRNA	28873-1_{1..682}	n324467|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041321|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041321|-1.4325400|-0.5110494	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324467|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041321|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041321|-1.4325400|-0.5110494	chr6	 81209779	 81210460	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26099_PI429285431	5.000124	P	5.044703	P	0.969572711481568	0	lncRNA	27611-2_{3001..4666}	lnc-GINS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GINS1-1:1	chr20	 25657488	 25659153	+	lnc-GINS1-1	lnc-GINS1-1:1	ENSG00000213742.2	RP4-694B14.5	ZNF337	"hg19_refFlat_ZNF337:range=chr20:25655668-256670535'pad=0,hg19_refFlat_ZNF337:range=chr20:25655668-256670535'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ZSCAN23:range=chr6:28402242-284040435'pad=0,hg19_refFlat_ZSCAN23:range=chr6:28402242-284040435'pad=0 3'pad=0 strand=- repeatMasking=none,-61.30chr20:25650496-25668710"	NA	inner
CUST_16316_PI429285431	0.9045447	A	0.91063344	A	0.995788500378691	0	lncRNA	18022-1_{1..259}	lnc-SOHLH2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOHLH2-1:1	chr13	 36735872	 36736130	-	lnc-SOHLH2-1	lnc-SOHLH2-1:1	XLOC_010568	linc-DCLK1	C13orf38-SOHLH2	NA	chr13:36742345-36745999	inter
CUST_38478_PI429285431	0.89475733	A	0.9054961	A	0.992584086447344	0	lncRNA	39496-1_{1..2513}	n382978|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002edb.2||2.2668400|-0.2007033	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382978|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002edb.2||2.2668400|-0.2007033	chr16	 32300868	 32303380	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23161_PI429285431	0.88391304	A	0.8841221	A	0.999855101149285	0	lncRNA	24732-1_{1..809}	lnc-OR4N4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR4N4-1:2	chr15	 22347583	 22348391	+	lnc-OR4N4-1	lnc-OR4N4-1:2	ENSG00000259176.1	RP11-69H14.6	OR4M2	NA	chr15:22337583-22357772	inter
LNCA_21_P0014432	1.884244	A	2.9864645	P	0.465799016977427	0	lncRNA	XR_109753	XR_109753	XR_109753	NA	Hs.405877	LOC100507599	uncharacterized LOC100507599	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507599 (LOC100507599), miscRNA [XR_109753]"	chr22:26909864-26909923	hs|22q12.1	Agilent_HUMAN_G3V2	XR_109753	XR_109753	chr22	 26909864	 26909923	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011894	1.9055402	A	3.4450002	P	0.344014194773088	0	lncRNA	THC2659818	NA	NA	NA	NA	XLOC_l2_007834	NA	NA	THC2659818	NA	"BROAD Institute lincRNA (XLOC_l2_007834), lincRNA [TCONS_l2_00014341]"	chr2:242910402-242910461	hs|2q37.3	Agilent_HUMAN_G3V2	THC2659818	THC2659818	chr2	242910402	242910461	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33742_PI429285431	0.9047195	A	0.9105276	A	0.995982224803711	0	lncRNA	35299-1_{1..948}	n340520|BC020856|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2982|NULL|5.1737100|-0.1015205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340520|BC020856|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2982|NULL|5.1737100|-0.1015205	chr5	 78985658	 78986605	+	NA	NA	NA	NA	CMYA5	NA	chr5:78985659-79035438	inner
CUST_1402_PI429285431	5.656102	P	6.1069546	P	0.731610355086499	0	lncRNA	1391-1_{1..757}	"transcript_id ""ENST00000470465.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000470465.1"" | genecode_v17"	chr3	 94657121	 94657877	+	ENSG00000239589.1	ENST00000470465.1	RP11-118N24.3	RP11-118N24.3-004	NA	NA	NA	inter
CUST_22241_PI429285431	5.717499	P	5.905982	P	0.877527960762041	0	lncRNA	23842-1_{1..663}	lnc-SIVA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SIVA1-1:1	chr14	105235984	105236646	+	lnc-SIVA1-1	lnc-SIVA1-1:1	ENSG00000258430.1	RP11-982M15.2	AKT1	NA	chr14:105235686-105246608	inner
CUST_51308_PI429285431	0.8891354	A	0.9166919	A	0.981080552369093	0	lncRNA	54912-1_{1..346}	hg19_lincRNAsTranscripts_TCONS_l2_00009029 range=chr15:38516327-38519065 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009029 range=chr15:38516327-38519065 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 38516327	 38516672	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007070	4.9988194	P	5.46577	P	0.723492215948657	0	lncRNA	TCONS_00018783	NA	NA	NA	NA	XLOC_008559	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008559), lincRNA [TCONS_00018783]"	chr10:92749981-92750040	hs|10q23.31	Agilent_HUMAN_G3V2	TCONS_00018783	TCONS_00018783	chr10	 92749981	 92750040	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_24_P933685	0.8901145	A	1.5160325	A	0.648007313154223	0	lncRNA	XR_109223	XR_109223	XR_109223	   643797	Hs.710272	LOC643797	AGVR6190	NA	NA	GO:0005576	"PREDICTED: Homo sapiens AGVR6190 (LOC643797), miscRNA [XR_109223]"	chr15:93258421-93258480	hs|15q26.1	Agilent_HUMAN_G3V2	XR_109223	XR_109223	chr15	 93258421	 93258480	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34386_PI429285431	0.89123434	A	0.8904673	A	1.00053181297578	0	lncRNA	35871-1_{1..2558}	n341257|AL117636|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3725|NULL|-0.9373310|-0.2896142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341257|AL117636|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3725|NULL|-0.9373310|-0.2896142	chr7	 71244475	 71247032	-	NA	NA	NA	NA	CALN1	NA	chr7:71244476-71256986	inner
CUST_860_PI429285431	1.1754707	A	1.6077262	A	0.741102244734748	0	lncRNA	854-1_{1..952}	"transcript_id ""ENST00000434020.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000434020.1"" | genecode_v17"	chr2	 43324884	 43325835	-	ENSG00000230587.1	ENST00000434020.1	AC093609.1	AC093609.1-001	NA	NA	NA	inter
CUST_26819_PI429285431	2.9617214	A	3.3449275	P	0.766731788523171	0	lncRNA	28332-1_{1..707}	n323888|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080722|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080722|-1.0259000|-0.1615224	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323888|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080722|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080722|-1.0259000|-0.1615224	chrX	 40007162	 40007868	+	NA	NA	NA	NA	BCOR	NA	chrX:39997162-40021419	inner
CUST_11928_PI429285431	5.524404	P	5.817528	P	0.816132896309457	0	lncRNA	13509-1_{1..3000}	lnc-ADCY9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ADCY9-1:1	chr16	  4002140	  4005139	-	lnc-ADCY9-1	lnc-ADCY9-1:1	XLOC_011865	linc-CREBBP	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80"	NA	inter
CUST_36003_PI429285431	1.1459866	A	0.91442406	A	1.17410589994983	0	lncRNA	37338-1_{1..428}	n344614|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_162|NULL|-1.2970800|-0.4479996	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344614|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_162|NULL|-1.2970800|-0.4479996	chr12	 96958245	 96958672	-	NA	NA	NA	NA	C12orf55	NA	chr12:96948245-96968879	inter
CUST_6769_PI429285431	6.3866816	P	7.0673857	P	0.623860728075435	0	lncRNA	6716-1_{1..579}	"transcript_id ""ENST00000428669.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428669.2"" | genecode_v17"	chr21	 17553911	 17554489	+	ENSG00000215386.6	ENST00000428669.2	LINC00478	LINC00478-007	NA	NA	NA	inter
CUST_29786_PI429285431	6.704018	P	6.7765913	P	0.950940315361061	0	lncRNA	31549-1_{1..964}	n333487|BC029934|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091954|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091954|5.7586400|-0.0272615	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333487|BC029934|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091954|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091954|5.7586400|-0.0272615	chr12	 94542724	 94543687	+	NA	NA	NA	NA	PLXNC1	NA	chr12:94542499-94553688	inner
CUST_32157_PI429285431	0.91074914	A	0.9167375	A	0.995857787874893	0	lncRNA	33858-1_{1..589}	n338726|AF087983|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1146|NULL|-1.0469300|-0.3783036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338726|AF087983|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1146|NULL|-1.0469300|-0.3783036	chr13	 49999344	 49999932	-	NA	NA	NA	NA	CAB39L	NA	chr13:49989344-50009977	inner
CUST_13012_PI429285431	0.9076327	A	1.0779798	A	0.888628858996559	0	lncRNA	14638-1_{1..249}	lnc-OR13C4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR13C4-2:1	chr9	106726033	106726281	-	lnc-OR13C4-2	lnc-OR13C4-2:1	XLOC_007812	linc-GRIN3A-3	NA	NA	NA	inter
CUST_49_PI429285431	6.4261737	P	6.965498	P	0.688093108590002	0	lncRNA	48-1_{1..462}	"transcript_id ""ENST00000531585.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531585.1"" | genecode_v17"	chr11	126862348	126862809	+	ENSG00000255317.1	ENST00000531585.1	RP11-688I9.2	RP11-688I9.2-001	KIRREL3	NA	chr11:126852348-126870766	inner
LNCA_21_P0007903	5.552023	P	5.937926	P	0.765299838327819	0	lncRNA	TCONS_00021452	NA	NA	NA	NA	XLOC_010257	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010257), lincRNA [TCONS_00021452]"	chr12:128597278-128596938	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00021452	TCONS_00021452	chr12	128596938	128597278	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30458_PI429285431	5.270283	P	4.9569073	P	1.24261183490624	0	lncRNA	32238-1_{1..946}	n335600|CR596650|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000275845|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000275845|3.0441300|-0.2686503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335600|CR596650|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000275845|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000275845|3.0441300|-0.2686503	chr4	141445340	141446285	+	NA	NA	NA	NA	ELMOD2	NA	chr4:141445312-141474924	inner
CUST_33497_PI429285431	3.9063156	P	4.1873755	P	0.822986174581599	0	lncRNA	35069-1_{1..2710}	n340236|D86322|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2697|NULL|8.3169100|-0.3863954	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340236|D86322|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2697|NULL|8.3169100|-0.3863954	chr4	141309606	141312315	-	NA	NA	NA	NA	SCOC	NA	chr4:141299606-141303710	inner
CUST_47553_PI429285431	1.2417334	A	0.8873118	A	1.27847291784747	0	lncRNA	51561-1_{1..1352}	"gi|323276600|ref|NR_037842.1| Homo sapiens long intergenic non-protein coding RNA 102 (LINC00102), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|323276600|ref|NR_037842.1| Homo sapiens long intergenic non-protein coding RNA 102 (LINC00102), non-coding RNA"	ChrY	  2481032	  2482383	-	100359394	NR_037842.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-63.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50"	NA	inter
LNCA_21_P0014340	1.9778788	A	0.8925185	A	2.12190534318175	0	lncRNA	XR_109346	XR_109346	XR_109346	NA	NA	LOC100505909	uncharacterized LOC100505909	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505909 (LOC100505909), miscRNA [XR_109346]"	chr17:81174183-81169123	hs|17q25.3	Agilent_HUMAN_G3V2	XR_109346	XR_109346	chr17	 81169123	 81174183	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30164_PI429285431	3.6003792	P	4.2025	P	0.658784812069532	0	lncRNA	31938-1_{1..443}	n334841|AJ308021|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246970|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246970|-1.3785700|-0.2220721	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334841|AJ308021|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246970|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246970|-1.3785700|-0.2220721	chr20	 56224549	 56224991	-	NA	NA	NA	NA	PMEPA1	NA	chr20:56223452-56234992	inner
LNCA_21_P0003268	0.892311	A	0.89201695	A	1.00020384070114	0	lncRNA	ENST00000478780	NA	NA	NA	NA	LOC100508383	uncharacterized LOC100508383	ENST00000478780	NA	NA	"BROAD Institute lincRNA (XLOC_002949), lincRNA [TCONS_00007051]"	chr3:184140910-184144428	hs|3q27.1	Agilent_HUMAN_G3V2	ENST00000478780	ENST00000478780	chr3	184140910	184144428	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9158_PI429285431	0.8917961	A	0.89773726	A	0.995890369435914	0	lncRNA	10677-1_{1..1073}	lnc-HMGB2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HMGB2-2:1	chr4	174185775	174186847	-	lnc-HMGB2-2	lnc-HMGB2-2:1	ENSG00000249097	ENST00000511941	GALNT7	NA	chr4:174175775-174195840	inner
CUST_16579_PI429285431	0.8955694	A	0.8984879	A	0.997979094737916	0	lncRNA	18280-1_{1..250}	lnc-AGBL4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AGBL4-2:1	chr1	 50688775	 50689024	-	lnc-AGBL4-2	lnc-AGBL4-2:1	XLOC_000829	linc-AGBL4-4	NA	NA	NA	inter
CUST_39174_PI429285431	11.344382	P	11.345857	P	0.998978130373398	0	lncRNA	40150-2_{3001..3181}	n385914|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009viv.2||7.4110200|-0.1306357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385914|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009viv.2||7.4110200|-0.1306357	chr1	    17406	    17586	-	NA	NA	NA	NA	LOC100652771	NA	chr1:12190-13639	inter
CUST_13063_PI429285431	0.9040561	A	0.9059578	A	0.998682710395377	0	lncRNA	14690-1_{1..462}	lnc-FCGR3B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FCGR3B-3:1	chr1	161526695	161527156	-	lnc-FCGR3B-3	lnc-FCGR3B-3:1	XLOC_001067	linc-FCGR3A	FCGR3A	NA	chr1:161516695-161520413	inter
CUST_26554_PI429285431	4.9789925	P	5.2814503	P	0.810869807287098	0	lncRNA	28059-1_{1..295}	lnc-TUFM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUFM-1:1	chr16	 28848253	 28848547	-	lnc-TUFM-1	lnc-TUFM-1:1	ENSG00000260570.1	RP11-24N18.1	ATXN2L	NA	chr16:28838253-28848558	inner
CUST_43413_PI429285431	10.223475	P	10.4263	P	0.868847570626511	0	lncRNA	48225-1_{1..1838}	"gi|296841055|ref|NR_033688.1| Homo sapiens penta-EF-hand domain containing 1 (PEF1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|296841055|ref|NR_033688.1| Homo sapiens penta-EF-hand domain containing 1 (PEF1), transcript variant 3, non-coding RNA"	Chr1	 32095463	 32097300	-	553115	NR_033688.1	NA	NA	NA	NA	NA	inter
CUST_8275_PI429285431	4.6965814	P	5.3566365	P	0.632854126299535	0	lncRNA	9859-1_{1..452}	lnc-CCDC90B-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCDC90B-2:6	chr11	 82904509	 82904960	-	lnc-CCDC90B-2	lnc-CCDC90B-2:6	ENSG00000247137	RP11-727A23.5	ANKRD42	NA	chr11:82905291-82914611	inter
LNCA_21_P0002986	1.7492409	A	0.9259537	A	1.76943307995696	0	lncRNA	TCONS_00006108	NA	NA	NA	NA	XLOC_002718	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002718), lincRNA [TCONS_00006108]"	chr3:81257701-81257760	hs|3p12.2	Agilent_HUMAN_G3V2	TCONS_00006108	TCONS_00006108	chr3	 81257701	 81257760	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45191_PI429285431	5.0642514	P	5.0781345	P	0.990423121583142	0	lncRNA	49659-1_{1..609}	"gi|397139278|ref|XR_110085.2| PREDICTED: Homo sapiens uncharacterized LOC100505775 (LOC100505775), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|397139278|ref|XR_110085.2| PREDICTED: Homo sapiens uncharacterized LOC100505775 (LOC100505775), misc_RNA"	NA	NA	NA	NA	NA	XR_110085.2	NA	NA	NA	NA	NA	Unknown
CUST_5092_PI429285431	1.751968	A	0.89959216	A	1.80547174150657	0	lncRNA	5032-1_{1..1074}	"transcript_id ""ENST00000560839.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560839.1"" | genecode_v17"	chr15	 20978413	 20979486	+	ENSG00000259443.1	ENST00000560839.1	RP11-403B2.5	RP11-403B2.5-001	LOC100287326	NA	chr15:20978828-20980200	inter
CUST_8087_PI429285431	9.01386	P	7.9024425	P	2.16057827667894	0	lncRNA	9693-1_{1..955}	lnc-WDR74-1:21	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR74-1:21	chr11	 62622605	 62623559	-	lnc-WDR74-1	lnc-WDR74-1:21	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62632708	inter
CUST_14255_PI429285431	0.89313453	A	0.8961752	A	0.9978945876589	0	lncRNA	15912-1_{1..1132}	lnc-WRB-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRB-2:3	chr21	 40701052	 40702183	+	lnc-WRB-2	lnc-WRB-2:3	XLOC_013942	linc-WRB-2	NA	NA	NA	inter
CUST_22067_PI429285431	3.4383078	P	2.7765002	A	1.58206360189875	0	lncRNA	23673-1_{1..816}	lnc-AC090186.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC090186.1-1:1	chr8	 52858996	 52859811	+	lnc-AC090186.1-1	lnc-AC090186.1-1:1	ENSG00000228801.4	RP11-110G21.1	LOC100287313	NA	chr8:52848996-52859733	inter
CUST_40454_PI429285431	0.9069247	A	0.9187827	A	0.991814347145382	0	lncRNA	41227-2_{3001..3668}	n409362|NR_033732|lncRNA|Homosapiens||RefGeneNoncode|NR_033732||5.9160100|-0.2703522	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n409362|NR_033732|lncRNA|Homosapiens||RefGeneNoncode|NR_033732||5.9160100|-0.2703522	chrY	 21620316	 21620983	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70"	NA	inter
LNCA_21_P0008572	1.7778119	A	0.9243472	A	1.80683491803769	0	lncRNA	TCONS_00023266	NA	NA	NA	NA	XLOC_011306	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011306), lincRNA [TCONS_00023266]"	chr15:74211381-74211440	hs|15q24.1	Agilent_HUMAN_G3V2	TCONS_00023266	TCONS_00023266	chr15	 74211381	 74211440	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48801_PI429285431	0.9112415	A	0.9292892	A	0.987568208818874	0	lncRNA	52639-1_{1..344}	hg19_lincRNAsTranscripts_TCONS_l2_00014301 range=chr2:234731113-234732317 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014301 range=chr2:234731113-234732317 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	234731113	234731456	+	NA	NA	NA	NA	HEATR7B1	NA	chr2:234721113-234742069	inter
CUST_20003_PI429285431	0.9073264	A	1.1747553	A	0.830798836004265	0	lncRNA	21656-1_{1..654}	lnc-C16orf78-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf78-5:1	chr16	 49323649	 49324302	+	lnc-C16orf78-5	lnc-C16orf78-5:1	ENSG00000260614.1	RP11-491F9.1	CBLN1	NA	chr16:49313649-49315742	inter
CUST_41270_PI429285431	12.880603	P	13.009205	P	0.914717400142702	0	lncRNA	42237-1_{1..74}	ENST00000577633 ncrna:miRNA chromosome:GRCh37:17:77680985:77681058:-1 gene:ENSG00000266665 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577633 ncrna:miRNA chromosome:GRCh37:17:77680985:77681058:-1 gene:ENSG00000266665 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 77680985	 77681058	-	ENSG00000266665	ENST00000577633	NA	NA	LOC100652929	NA	chr17:77681138-77686082	inter
CUST_39482_PI429285431	11.597013	P	11.294478	P	1.23330959348446	0	lncRNA	40428-1_{1..1482}	n387140|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010yxy.1||2.4871400|-0.3258708	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387140|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010yxy.1||2.4871400|-0.3258708	chr2	114368815	114370296	-	NA	NA	NA	NA	RABL2A	"hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80chr2:114384817-114394715"	NA	inter
CUST_442_PI429285431	1.5946914	A	2.683971	A	0.469996005344363	0	lncRNA	434-1_{1..657}	"transcript_id ""ENST00000598757.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598757.1"" | genecode_v17"	chr1	147635156	147635812	+	ENSG00000232265.2	ENST00000598757.1	XXyac-YX155B6.5	XXyac-YX155B6.5-008	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00"	NA	inter
CUST_29482_PI429285431	2.2113855	A	1.7596967	A	1.36764026195369	0	lncRNA	31240-1_{1..568}	n332904|AF086285|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067164|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067164|-1.3753000|-0.2471589	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332904|AF086285|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067164|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067164|-1.3753000|-0.2471589	chr2	 46755017	 46755584	-	NA	NA	NA	NA	RHOQ	NA	chr2:46769867-46778722	inter
CUST_19252_PI429285431	0.9072685	A	0.9129641	A	0.99605989358743	0	lncRNA	20921-1_{1..334}	lnc-JAM3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JAM3-2:1	chr11	134055824	134056157	+	lnc-JAM3-2	lnc-JAM3-2:1	ENSG00000255348.1	RP11-700F16.3	NCAPD3	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NCAPD3:range=chr11:134022839-1340938205'pad=0,hg19_refFlat_NCAPD3:range=chr11:134022839-1340938205'pad=0 3'pad=0 strand=- repeatMasking=none,-92.80chr11:134045824-134066061"	NA	inner
CUST_24723_PI429285431	2.2262554	A	3.6916473	P	0.362137152753981	0	lncRNA	26269-1_{1..674}	lnc-GFM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GFM1-1:1	chr3	158501668	158502341	+	lnc-GFM1-1	lnc-GFM1-1:1	ENSG00000240207.1	RP11-379F4.4	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RARRES1:range=chr3:158415467-1584502045'pad=0,hg19_refFlat_RARRES1:range=chr3:158415467-1584502045'pad=0 3'pad=0 strand=- repeatMasking=none,-111.80;hg19_refFlat_RARRES1:range=chr3:158422565-1584502045'pad=0,hg19_refFlat_RARRES1:range=chr3:158422565-1584502045'pad=0 3'pad=0 strand=- repeatMasking=none,-111.80"	NA	inter
CUST_255_PI429201921	0.9157561	A	1.4774837	A	0.677490395858952	0	lncRNA	190-2_{3001..6000}	TC07002344.hg.1	TCONS_l2_00025913-XLOC_l2_013430 // Broad TUCP // linc-ZNF727-12 chr7:+:62910802-62917227 // chr7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr7:+:62910802-62917227	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00025913-XLOC_l2_013430	linc-ZNF727-12	chr7	 62910802	 62917227	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22917_PI429285431	2.960161	P	3.50117	P	0.687290060234134	0	lncRNA	24493-2_{3001..4158}	lnc-TFPT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TFPT-1:1	chr19	 54628871	 54630028	-	lnc-TFPT-1	lnc-TFPT-1:1	ENSG00000237017.1	AC012314.8	PRPF31	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PRPF31:range=chr19:54621659-546348635'pad=0,hg19_refFlat_PRPF31:range=chr19:54621659-546348635'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60chr19:54618790-54635150"	NA	inner
CUST_16947_PI429285431	7.6094394	P	7.510252	P	1.07116995461349	0	lncRNA	18660-1_{1..755}	lnc-PREPL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PREPL-1:1	chr2	 44476340	 44477094	-	lnc-PREPL-1	lnc-PREPL-1:1	XLOC_002073	linc-LRPPRC-1	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70"	NA	inter
CUST_33030_PI429285431	1.3812084	A	1.1882439	A	1.14311020686956	0	lncRNA	34644-2_{3001..4588}	n339717|AK125862|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2162|NULL|-0.7299570|-0.2398916	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339717|AK125862|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2162|NULL|-0.7299570|-0.2398916	chr20	 49190511	 49192098	-	NA	NA	NA	NA	PTPN1	"hg19_refFlat_PTPN1:range=chr20:49127065-491992525'pad=0,hg19_refFlat_PTPN1:range=chr20:49127065-491992525'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80chr20:49177511-49201088"	NA	inner
CUST_6597_PI429285431	5.5605803	P	4.624019	P	1.91396082366475	0	lncRNA	6545-1_{1..475}	"transcript_id ""ENST00000594783.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594783.1"" | genecode_v17"	chr19	 56989526	 56990000	+	ENSG00000166770.6	ENST00000594783.1	AC004696.2	AC004696.2-008	ZNF667	NA	chr19:56979526-56988770	inter
LNCA_21_P0003298	0.8950205	A	0.9019804	A	0.995187382869934	0	lncRNA	ENST00000514281	NA	NA	NA	NA	XLOC_003235	NA	ENST00000514281	NA	NA	"BROAD Institute lincRNA (XLOC_003235), lincRNA [TCONS_00007251]"	chr3:126007766-126007710	hs|3q21.3	Agilent_HUMAN_G3V2	ENST00000514281	ENST00000514281	chr3	126007710	126007766	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2801_PI429285431	0.8950762	A	0.90461344	A	0.993411091663553	0	lncRNA	2785-1_{1..580}	"transcript_id ""ENST00000442323.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442323.1"" | genecode_v17"	chr7	 35297992	 35298571	-	ENSG00000226063.1	ENST00000442323.1	AC009531.2	AC009531.2-001	TBX20	NA	chr7:35287992-35293711	inter
CUST_17555_PI429285431	7.034456	P	7.3180485	P	0.821542718865759	0	lncRNA	19283-1_{1..628}	lnc-RP11-17A1.2.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-17A1.2.1-1:5	chr11	 22881923	 22882550	-	lnc-RP11-17A1.2.1-1	lnc-RP11-17A1.2.1-1:5	XLOC_009393	linc-SVIP	LOC100500938	NA	chr11:22871923-22881972	inner
CUST_9649_PI429285431	0.8801994	A	0.8831661	A	0.99794575311861	0	lncRNA	11167-1_{1..226}	lnc-AL137145.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL137145.1-1:1	chr10	  6373173	  6373398	+	lnc-AL137145.1-1	lnc-AL137145.1-1:1	XLOC_008367	linc-ITIH2-13	NA	NA	NA	inter
CUST_48452_PI429285431	3.7206502	P	3.962343	P	0.845752358326148	0	lncRNA	52307-1_{1..1130}	hg19_lincRNAsTranscripts_TCONS_l2_00001744 range=chr1:210438848-210440481 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001744 range=chr1:210438848-210440481 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	210438848	210439977	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007542	5.1709003	P	5.1474605	P	1.0163799352617	0	lncRNA	TCONS_00020378	NA	NA	NA	NA	XLOC_009709	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009709), lincRNA [TCONS_00020378]"	chr12:39317681-39317740	hs|12q12	Agilent_HUMAN_G3V2	TCONS_00020378	TCONS_00020378	chr12	 39317681	 39317740	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10605_PI429285431	0.90889454	A	1.617295	A	0.6119982955294	0	lncRNA	12133-1_{1..531}	lnc-PIGP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIGP-1:1	chr21	 38414122	 38414652	-	lnc-PIGP-1	lnc-PIGP-1:1	XLOC_014070	linc-HLCS	NA	NA	NA	inter
CUST_2426_PI429285431	0.890143	A	0.88708794	A	1.00211984993699	0	lncRNA	2418-1_{1..489}	"transcript_id ""ENST00000519755.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519755.1"" | genecode_v17"	chr5	172381910	172382398	+	ENSG00000254295.1	ENST00000519755.1	CTC-308K20.2	CTC-308K20.2-001	ERGIC1	NA	chr5:172371910-172379688	inter
CUST_13703_PI429285431	5.407391	P	5.513533	P	0.929069224347119	0	lncRNA	15342-2_{3001..6000}	lnc-BATF3-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-BATF3-2:3	chr1	212814656	212817655	-	lnc-BATF3-2	lnc-BATF3-2:3	XLOC_001195	linc-TMEM206-2	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60"	NA	inter
CUST_47548_PI429285431	2.7411463	A	3.4099786	P	0.629015598933793	0	lncRNA	51557-1_{1..2188}	"gi|224548996|ref|NR_027232.1| Homo sapiens long intergenic non-protein coding RNA 685 (LINC00685), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224548996|ref|NR_027232.1| Homo sapiens long intergenic non-protein coding RNA 685 (LINC00685), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NR_027232.1	NA	NA	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.50;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-55.20;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50"	NA	Unknown
CUST_19474_PI429285431	0.9201434	A	0.9290396	A	0.993852597130058	0	lncRNA	21131-1_{1..445}	lnc-INSIG2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-INSIG2-2:1	chr2	118753923	118754367	+	lnc-INSIG2-2	lnc-INSIG2-2:1	ENSG00000235066.1	AC009303.1	CCDC93	NA	chr2:118743923-118764186	inner
CUST_34440_PI429285431	0.89290804	A	0.90351576	A	0.99267425384168	0	lncRNA	35919-1_{1..3000}	n341316|U25433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3785|NULL|0.2981830|-0.3760724	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341316|U25433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3785|NULL|0.2981830|-0.3760724	chr7	129546219	129549218	+	NA	NA	NA	NA	UBE2H	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr7:129536219-129559153"	NA	inner
CUST_43325_PI429285431	2.786882	A	2.27346	A	1.42743198008851	0	lncRNA	48156-1_{1..2297}	ENST00000411477 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:29958305:30018524:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>ENST00000411477 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:29958305:30018524:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	chrHSCHR6_MHC_QBL	 29958305	 29960601	-	ENSG00000235814	ENST00000411477	NA	NA	NA	NA	NA	Unknown
CUST_48949_PI429285431	9.631378	P	7.647877	P	3.95451563932903	0	lncRNA	52791-1_{1..2331}	hg19_lincRNAsTranscripts_TCONS_l2_00019618 range=chr3:172142213-172144915 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019618 range=chr3:172142213-172144915 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	172142213	172144543	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47973_PI429285431	3.9106576	P	4.2926035	P	0.767401824463326	0	lncRNA	51863-1_{1..1271}	"gi|410172770|ref|XR_171975.1| PREDICTED: Homo sapiens uncharacterized LOC101060443 (LOC101060443), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172770|ref|XR_171975.1| PREDICTED: Homo sapiens uncharacterized LOC101060443 (LOC101060443), misc_RNA"	NA	NA	NA	NA	NA	XR_171975.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80"	NA	Unknown
CUST_4747_PI429285431	0.9116173	A	0.907681	A	1.00273216081384	0	lncRNA	4691-1_{1..497}	"transcript_id ""ENST00000549330.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549330.1"" | genecode_v17"	chr14	 27244701	 27245197	-	ENSG00000257845.1	ENST00000549330.1	RP11-626P14.1	RP11-626P14.1-001	NA	NA	NA	inter
LNCA_32_P226646	6.393828	P	6.2364306	P	1.11527338593496	0	lncRNA	XR_109259	XR_109259	XR_109259	100129781	NA	LOC100129781	uncharacterized LOC100129781	NA	THC2661917	NA	"PREDICTED: Homo sapiens hypothetical LOC100129781, transcript variant 2 (LOC100129781), miscRNA [XR_109259]"	chr16:14420232-14420291	hs|16p13.12	Agilent_HUMAN_G3V2	XR_109259	XR_109259	chr16	 14420232	 14420291	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010577	9.353989	P	9.346257	P	1.00537380135041	0	lncRNA	TCONS_l2_00000849	NA	NA	NA	NA	XLOC_l2_000641	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000641), lincRNA [TCONS_l2_00000849]"	chr1:224196037-224196096	hs|1q42.11	Agilent_HUMAN_G3V2	TCONS_l2_00000849	TCONS_l2_00000849	chr1	224196037	224196096	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12663_PI429285431	2.5731816	A	1.6434249	A	1.90495471227429	0	lncRNA	14279-1_{1..486}	lnc-SLC6A9-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC6A9-2:2	chr1	 44411916	 44412401	-	lnc-SLC6A9-2	lnc-SLC6A9-2:2	XLOC_000812	linc-HYI-2	IPO13	NA	chr1:44412478-44421974	inter
LNCA_21_P0003809	0.8853835	A	0.88508785	A	1.00020494996331	0	lncRNA	TCONS_00009184	NA	NA	NA	NA	XLOC_004198	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004198), lincRNA [TCONS_00009184]"	chr4:184255248-184255189	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00009184	TCONS_00009184	chr4	184255189	184255248	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26206_PI429285431	1.0228393	A	1.0754641	A	0.964180528431278	0	lncRNA	27717-1_{1..3000}	lnc-CTD-2523D13.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2523D13.1.1-2:1	chr11	119529729	119532728	+	lnc-CTD-2523D13.1.1-2	lnc-CTD-2523D13.1.1-2:1	ENSG00000254561.1	RP11-196E1.3	PVRL1	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PVRL1:range=chr11:119508808-1195992635'pad=0,hg19_refFlat_PVRL1:range=chr11:119508808-1195992635'pad=0 3'pad=0 strand=- repeatMasking=none,-101.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr11:119519729-119539994"	NA	inner
CUST_47940_PI429285431	2.78133	A	2.4824088	A	1.23022414807572	0	lncRNA	51832-1_{1..1409}	"gi|410172384|ref|XR_171757.1| PREDICTED: Homo sapiens uncharacterized LOC100507316, transcript variant 2 (LOC100507316), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410172384|ref|XR_171757.1| PREDICTED: Homo sapiens uncharacterized LOC100507316, transcript variant 2 (LOC100507316), misc_RNA"	NA	NA	NA	NA	NA	XR_171757.1	NA	NA	NA	NA	NA	Unknown
CUST_1986_PI429285431	3.0443645	P	3.45405	P	0.752787459562825	0	lncRNA	1977-1_{1..792}	"transcript_id ""ENST00000507483.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507483.1"" | genecode_v17"	chr4	175457791	175458582	+	ENSG00000251584.1	ENST00000507483.1	RP11-440I14.3	RP11-440I14.3-001	NA	"hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10"	NA	inter
CUST_9597_PI429285431	0.90450406	A	0.89622885	A	1.00575242047333	0	lncRNA	11112-1_{1..386}	lnc-RP11-22D3.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-22D3.1.1-3:1	chr16	 49154806	 49155191	+	lnc-RP11-22D3.1.1-3	lnc-RP11-22D3.1.1-3:1	XLOC_011712	linc-C16orf78-3	NA	NA	NA	inter
CUST_36451_PI429285431	0.9032222	A	0.9449995	A	0.971457441905365	0	lncRNA	37663-1_{1..3000}	n344963|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_512|NULL|-1.6201900|-0.3244831	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344963|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_512|NULL|-1.6201900|-0.3244831	chr7	104622580	104625579	-	NA	NA	NA	NA	MLL5	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30chr7:104654637-104662888"	NA	inter
CUST_15832_PI429285431	2.752309	A	2.6894488	A	1.04453454049918	0	lncRNA	17522-1_{1..1125}	lnc-LGALS12-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LGALS12-2:2	chr11	 63267874	 63268998	+	lnc-LGALS12-2	lnc-LGALS12-2:2	XLOC_009152	linc-LGALS12	HRASLS5	NA	chr11:63257874-63258680	inter
CUST_29671_PI429285431	5.2286067	P	5.5771713	P	0.785365103179731	0	lncRNA	31433-1_{1..323}	n333315|AY166792|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084889|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084889|0.7921130|-0.4488821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333315|AY166792|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084889|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084889|0.7921130|-0.4488821	chr19	 44771011	 44771333	+	NA	NA	NA	NA	ZNF233	NA	chr19:44764033-44779470	inner
CUST_29747_PI429285431	15.121139	P	15.2028885	P	0.944911094850731	0	lncRNA	31509-1_{1..410}	n333425|BC013215|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000088048|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000088048|1.9948300|-0.2280545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333425|BC013215|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000088048|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000088048|1.9948300|-0.2280545	chr12	 56436231	 56436640	+	NA	NA	NA	NA	IKZF4	NA	chr12:56426231-56432219	inner
CUST_24059_PI429285431	0.88374305	A	0.88769776	A	0.997262557560949	0	lncRNA	25609-1_{1..470}	lnc-RP11-422N16.3.1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-422N16.3.1-4:3	chr8	112555148	112555617	+	lnc-RP11-422N16.3.1-4	lnc-RP11-422N16.3.1-4:3	ENSG00000253434.1	RP11-1101K5.1	NA	NA	NA	inter
CUST_15831_PI429285431	0.8831661	A	0.8799705	A	1.00221747610177	0	lncRNA	17521-1_{1..1718}	lnc-CPN2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CPN2-1:2	chr3	194030390	194032107	-	lnc-CPN2-1	lnc-CPN2-1:2	XLOC_003385	linc-ATP13A4-8	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_C11orf44:range=chr11:130542874-1305840925'pad=0,hg19_refFlat_C11orf44:range=chr11:130542874-1305840925'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-26.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.01;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70"	NA	inter
CUST_17811_PI429285431	1.1090819	A	0.90756184	A	1.1499092904738	0	lncRNA	19548-1_{1..965}	lnc-GIMAP8-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GIMAP8-1:7	chr7	150141852	150142816	+	lnc-GIMAP8-1	lnc-GIMAP8-1:7	XLOC_006293	linc-GIMAP8-1	GIMAP8	NA	chr7:150147962-150151904	inter
LNCA_21_P0012618	0.8880899	A	0.88714576	A	1.00065464216376	0	lncRNA	TCONS_l2_00020786	NA	NA	NA	NA	XLOC_l2_010855	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010855), lincRNA [TCONS_l2_00020786]"	chr4:139260380-139266861	hs|4q28.3	Agilent_HUMAN_G3V2	TCONS_l2_00020786	TCONS_l2_00020786	chr4	139260380	139266861	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13576_PI429285431	1.6642514	A	0.9091768	A	1.68771885988644	0	lncRNA	15217-1_{1..790}	lnc-CASP12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CASP12-1:1	chr11	104479965	104480754	-	lnc-CASP12-1	lnc-CASP12-1:1	XLOC_009538	linc-PDGFD	NA	NA	NA	inter
CUST_44281_PI429285431	0.88540274	A	0.8899307	A	0.99686637736884	0	lncRNA	48917-1_{1..2760}	"gi|299782555|ref|NR_033843.1| Homo sapiens uncharacterized LOC646168 (LOC646168), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|299782555|ref|NR_033843.1| Homo sapiens uncharacterized LOC646168 (LOC646168), non-coding RNA"	NA	NA	NA	NA	NA	NR_033843.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008479	1.3479921	A	0.94346	A	1.32365954678869	0	lncRNA	TCONS_00022843	NA	NA	NA	NA	XLOC_011110	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011110), lincRNA [TCONS_00022843]"	chr14:95806020-95805961	hs|14q32.13	Agilent_HUMAN_G3V2	TCONS_00022843	TCONS_00022843	chr14	 95805961	 95806020	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51911_PI429285431	7.460604	P	7.38239	P	1.05571030322495	0	lncRNA	55454-1_{1..363}	hg19_lincRNAsTranscripts_TCONS_l2_00016213 range=chr20:25677750-25715217 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016213 range=chr20:25677750-25715217 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 25677750	 25678112	+	NA	NA	NA	NA	ZNF337	NA	chr20:25667750-25677469	inter
CUST_1673_PI429285431	0.8885997	A	0.8876023	A	1.00069158403193	0	lncRNA	1657-2_{3001..3214}	"transcript_id ""ENST00000510175.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510175.1"" | genecode_v17"	chr4	   127420	   127633	+	ENSG00000250312.2	ENST00000510175.1	ZNF718	ZNF718-002	ZNF718	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90chr4:124420-156491"	NA	inner
CUST_203_PI429201921	3.1952298	A	3.2122447	A	0.988275444644988	0	lncRNA	162-2_{3001..5295}	TC07002303.hg.1	TCONS_l2_00027114-XLOC_l2_013393 // Broad TUCP // linc-C7orf69 chr7:+:47801073-47806369 // chr7 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00025864-XLOC_l2_013393 // Broad TUCP // linc-C7orf69 chr7:+:47803006-47806316 // chr7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr7:+:47801073-47806369	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00027114-XLOC_l2_013393	linc-C7orf69	chr7	 47801073	 47806369	+	NA	NA	NA	NA	PADI1	NA	chr1:17531621-17534112	Unknown
CUST_10164_PI429285431	2.0464694	A	1.8337047	A	1.15890692163143	0	lncRNA	11689-1_{1..919}	lnc-SIK1-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIK1-4:7	chr21	 44897944	 44898862	-	lnc-SIK1-4	lnc-SIK1-4:7	XLOC_014105	linc-SIK1-2	NA	NA	NA	inter
LNCA_21_P0009162	1.6635344	A	2.3857157	A	0.606180227539602	0	lncRNA	ENST00000443508	XR_109374	XR_109374	NA	NA	XLOC_012139	NA	ENST00000443508	THC2527306	NA	"PREDICTED: Homo sapiens hypothetical LOC100507263, transcript variant 1 (LOC100507263), miscRNA [XR_109374]"	chr17:20832987-20833046	hs|17p11.2	Agilent_HUMAN_G3V2	ENST00000443508	ENST00000443508	chr17	 20832987	 20833046	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49136_PI429285431	4.381493	P	4.684639	P	0.810483095260388	0	lncRNA	52962-1_{1..587}	hg19_lincRNAsTranscripts_TCONS_l2_00020652 range=chr4:100573939-100575021 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020652 range=chr4:100573939-100575021 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	100573939	100574525	+	NA	NA	NA	NA	LOC285556	NA	chr4:100563939-100576743	inter
CUST_19428_PI429285431	5.839613	P	5.7233458	P	1.0839267011562	0	lncRNA	21088-2_{3001..4506}	lnc-C17orf89-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf89-1:1	chr17	 79210739	 79212244	+	lnc-C17orf89-1	lnc-C17orf89-1:1	ENSG00000260005.2	AC027601.1	C17orf56	"hg19_refFlat_ENTHD2:range=chr17:79202728-792128335'pad=0,hg19_refFlat_ENTHD2:range=chr17:79202728-792128335'pad=0 3'pad=0 strand=- repeatMasking=none,-105.80chr17:79202077-79212891"	NA	inner
CUST_29572_PI429285431	2.8252354	A	3.517715	P	0.618789404964894	0	lncRNA	31332-1_{1..407}	n333069|AF262302|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075455|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075455|1.3271100|-0.2593056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333069|AF262302|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075455|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075455|1.3271100|-0.2593056	chr3	 46283951	 46284357	+	NA	NA	NA	NA	CCR3	NA	chr3:46283872-46308197	inner
CUST_37231_PI429285431	1.2840376	A	0.90367216	A	1.30167153190863	0	lncRNA	38341-1_{1..3000}	n345664|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1213|NULL|-1.7555600|-0.2392483	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345664|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1213|NULL|-1.7555600|-0.2392483	chr5	141134500	141137499	-	NA	NA	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40"	NA	inter
CUST_16819_PI429285431	10.971535	P	10.67222	P	1.23055999756681	0	lncRNA	18527-1_{1..3000}	lnc-IRF2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRF2-2:4	chr4	185303288	185306287	-	lnc-IRF2-2	lnc-IRF2-2:4	XLOC_004205	linc-ENPP6-2	IRF2	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10chr4:185308876-185313530"	NA	inter
CUST_47058_PI429285431	11.636809	P	11.924758	P	0.819065651733464	0	lncRNA	51145-1_{1..1765}	"gi|392996952|ref|NR_072976.1| Homo sapiens RAD23 homolog A (S. cerevisiae) (RAD23A), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392996952|ref|NR_072976.1| Homo sapiens RAD23 homolog A (S. cerevisiae) (RAD23A), transcript variant 4, non-coding RNA"	Chr19	 13056628	 13058392	+	5886	NR_072976.1	NA	NA	NA	NA	NA	inter
CUST_24436_PI429285431	7.700454	P	7.9585056	P	0.836216490930282	0	lncRNA	25989-1_{1..600}	lnc-RASAL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-RASAL2-1:1	chr1	178449742	178450341	+	lnc-RASAL2-1	lnc-RASAL2-1:1	ENSG00000260938.1	RP4-593C16.3	RASAL2	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60chr1:178439742-178448649"	NA	inter
CUST_29730_PI429285431	1.4561825	A	1.427324	A	1.02020459234219	0	lncRNA	31492-1_{1..1080}	n333402|BC009365|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087263|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087263|4.0461600|-0.2192843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333402|BC009365|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087263|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087263|4.0461600|-0.2192843	chr19	 54059077	 54060156	+	NA	NA	NA	NA	ZNF331	NA	chr19:54049077-54083523	inner
LNCA_21_P0014599	3.282099	P	3.4602168	P	0.883855358907249	0	lncRNA	XR_110480	XR_110480	XR_110480	NA	Hs.192268	LOC100506007	uncharacterized LOC100506007	NA	THC2626629	NA	"PREDICTED: Homo sapiens hypothetical LOC100506007 (LOC100506007), miscRNA [XR_110480]"	chr1:100730479-100730420	hs|1p21.2	Agilent_HUMAN_G3V2	XR_110480	XR_110480	chr1	100730420	100730479	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011994	0.88834924	A	0.8883179	A	1.00002172346859	0	lncRNA	ENST00000441014	NA	NA	NA	NA	XLOC_l2_007184	NA	ENST00000441014	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007184), lincRNA [TCONS_l2_00015229]"	chr2:7568534-7576141	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000441014	ENST00000441014	chr2	  7568534	  7576141	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_639_PI429285431	5.8889337	P	6.2201467	P	0.794867887712697	0	lncRNA	631-1_{1..845}	"transcript_id ""ENST00000430529.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430529.1"" | genecode_v17"	chr2	   317912	   318756	+	ENSG00000233684.2	ENST00000430529.1	AC079779.6	AC079779.6-001	NA	NA	NA	inter
CUST_20071_PI429285431	1.1307282	A	0.9079573	A	1.16697277180524	0	lncRNA	21720-2_{3001..3266}	lnc-SLCO5A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SLCO5A1-1:1	chr8	 70582284	 70582549	-	lnc-SLCO5A1-1	lnc-SLCO5A1-1:1	ENSG00000261658.1	RP11-102F4.3	SULF1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40chr8:70569284-70573147"	NA	inter
CUST_31833_PI429285431	1.0778673	A	0.90393	A	1.12813310735596	0	lncRNA	33568-1_{1..2410}	n338379|AK129658|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|774|NULL|-1.0117900|-0.3994623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338379|AK129658|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|774|NULL|-1.0117900|-0.3994623	chr1	176980695	176983104	-	NA	NA	NA	NA	ASTN1	NA	chr1:176970695-176992901	inner
CUST_32264_PI429285431	2.5092235	A	2.6337142	A	0.917327820989391	0	lncRNA	33953-1_{1..2299}	n338842|AK096262|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1265|NULL|-0.2753230|-0.2410323	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338842|AK096262|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1265|NULL|-0.2753230|-0.2410323	chr12	  2901745	  2904043	-	NA	NA	NA	NA	FKBP4	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90chr12:2891745-2914044"	NA	inter
CUST_41444_PI429285431	3.003423	P	2.4851665	A	1.43222335678184	0	lncRNA	42622-1_{1..80}	ENST00000581508 ncrna:miRNA chromosome:GRCh37:3:134156669:134156748:1 gene:ENSG00000263554 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581508 ncrna:miRNA chromosome:GRCh37:3:134156669:134156748:1 gene:ENSG00000263554 gene_biotype:miRNA transcript_biotype:miRNA	chr3	134156669	134156748	+	ENSG00000263554	ENST00000581508	NA	NA	NA	"hg19_refFlat_HMGB3:range=chrX:150154073-1501563875'pad=0,hg19_refFlat_HMGB3:range=chrX:150154073-1501563875'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60"	NA	inter
CUST_39387_PI429285431	0.9079915	A	0.9291464	A	0.985443525667594	0	lncRNA	40350-1_{1..1044}	n386540|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010nlv.1||-0.8327760|-0.2851883	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386540|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010nlv.1||-0.8327760|-0.2851883	chrX	 75878197	 75879240	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5542_PI429285431	1.1543555	A	1.9897873	A	0.560415281082992	0	lncRNA	5472-1_{1..437}	"transcript_id ""ENST00000569993.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569993.1"" | genecode_v17"	chr16	 51796430	 51796866	+	ENSG00000260057.1	ENST00000569993.1	RP11-7O14.1	RP11-7O14.1-001	NA	NA	NA	inter
CUST_44278_PI429285431	0.89090055	A	0.9027333	A	0.991831705998577	0	lncRNA	48915-1_{1..3000}	"gi|335892855|ref|NR_038387.1| Homo sapiens uncharacterized LOC730091 (LOC730091), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|335892855|ref|NR_038387.1| Homo sapiens uncharacterized LOC730091 (LOC730091), non-coding RNA"	Chr3	156465132	156468131	-	730091	NR_038387.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30"	NA	inter
CUST_22534_PI429285431	4.5265927	P	4.94163	P	0.750000103597184	0	lncRNA	24122-1_{1..579}	lnc-IFT46-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IFT46-1:2	chr11	118401219	118401797	-	lnc-IFT46-1	lnc-IFT46-1:2	ENSG00000255435.2	RP11-770J1.3	MLL	"hg19_refFlat_TTC36:range=chr11:118398210-1184016315'pad=0,hg19_refFlat_TTC36:range=chr11:118398210-1184016315'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.50;hg19_refFlat_MLL:range=chr11:118307228-1183928875'pad=0,hg19_refFlat_MLL:range=chr11:118307228-1183928875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr11:118391219-118397539"	NA	inner
CUST_38839_PI429285431	0.89600945	A	0.90272254	A	0.995357649767783	0	lncRNA	39830-1_{1..2203}	n384648|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jsu.1||-0.8923930|-0.3209695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n384648|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jsu.1||-0.8923930|-0.3209695	chr5	 60954317	 60956519	-	NA	NA	NA	NA	C5orf64	NA	chr5:60944317-60993841	inner
CUST_14914_PI429285431	0.89324903	A	0.9033512	A	0.993022168261384	0	lncRNA	16576-1_{1..1113}	lnc-CRIPT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRIPT-1:1	chr2	 46877295	 46878407	+	lnc-CRIPT-1	lnc-CRIPT-1:1	XLOC_001457	linc-SOCS5	NA	NA	NA	inter
CUST_15170_PI429285431	2.8799539	A	3.1973827	P	0.802498833349973	0	lncRNA	16833-1_{1..3000}	lnc-PAQR4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-PAQR4-1:3	chr16	  3042404	  3045403	+	lnc-PAQR4-1	lnc-PAQR4-1:3	XLOC_011624	linc-CLDN9	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-57.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-60.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20"	NA	inter
CUST_2630_PI429285431	2.4949281	A	3.0146847	P	0.697489498113949	0	lncRNA	2617-1_{1..479}	"transcript_id ""ENST00000412602.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412602.1"" | genecode_v17"	chr6	134927437	134927915	-	ENSG00000229722.1	ENST00000412602.1	RP11-557H15.5	RP11-557H15.5-001	NA	NA	NA	inter
CUST_42417_PI429285431	0.88937545	A	0.89864975	A	0.993592163414559	0	lncRNA	45128-1_{1..132}	ENST00000516771 ncrna:snoRNA chromosome:GRCh37:9:26796171:26796302:-1 gene:ENSG00000252580 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516771 ncrna:snoRNA chromosome:GRCh37:9:26796171:26796302:-1 gene:ENSG00000252580 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	 26796171	 26796302	-	ENSG00000252580	ENST00000516771	NA	NA	NA	NA	NA	inter
LNCA_21_P0001156	0.90706295	A	0.9204248	A	0.990781029049036	0	lncRNA	ENST00000435559	NA	NA	NA	NA	XLOC_000922	NA	ENST00000435559	NA	NA	"BROAD Institute lincRNA (XLOC_000922), lincRNA [TCONS_00000576]"	chr1:95086769-95086710	hs|1p21.3	Agilent_HUMAN_G3V2	ENST00000435559	ENST00000435559	chr1	 95086710	 95086769	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31272_PI429285431	11.383227	P	10.917031	P	1.38146211648349	0	lncRNA	33060-1_{1..948}	n337729|BC069790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|111|NULL|-0.7983990|-0.1552870	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337729|BC069790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|111|NULL|-0.7983990|-0.1552870	chr1	 16273332	 16274279	+	NA	NA	NA	NA	SPEN	"hg19_refFlat_ZBTB17:range=chr1:16268464-162749905'pad=0,hg19_refFlat_ZBTB17:range=chr1:16268464-162749905'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_ZBTB17:range=chr1:16268464-162735555'pad=0,hg19_refFlat_ZBTB17:range=chr1:16268464-162735555'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30chr1:16263332-16266950"	NA	inner
CUST_39610_PI429285431	3.119297	P	3.0108793	A	1.07804522368566	0	lncRNA	40551-2_{3001..6000}	n387663|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kwn.1||1.3550400|-0.2245321	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387663|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kwn.1||1.3550400|-0.2245321	chr8	  7121141	  7124140	-	NA	NA	NA	NA	FAM90A15	NA	chr8:7108141-7117436	inter
CUST_22314_PI429285431	3.5315447	P	3.8020172	P	0.829047978149114	0	lncRNA	23913-1_{1..2465}	lnc-RASL11B-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RASL11B-2:3	chr4	 53822135	 53824599	+	lnc-RASL11B-2	lnc-RASL11B-2:3	ENSG00000248115.1	RP11-752D24.2	SCFD2	NA	chr4:53812135-53834254	inner
CUST_13857_PI429285431	8.52751	P	8.551588	P	0.983448901951852	0	lncRNA	15501-1_{1..417}	lnc-SRBD1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRBD1-4:1	chr2	 45550110	 45550526	-	lnc-SRBD1-4	lnc-SRBD1-4:1	XLOC_002078	linc-SIX2-2	NA	NA	NA	inter
CUST_18997_PI429285431	4.5271473	P	5.2866945	P	0.590681691234068	0	lncRNA	20688-1_{1..1702}	lnc-RP11-1070N10.3.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-1070N10.3.1-3:1	chr14	 95646088	 95647789	+	lnc-RP11-1070N10.3.1-3	lnc-RP11-1070N10.3.1-3:1	ENSG00000235706	AL356017.3	CLMN	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00chr14:95648276-95656263"	NA	inter
CUST_28674_PI429285431	2.4325464	A	2.3012536	A	1.09527473807335	0	lncRNA	30369-1_{1..454}	n326056|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046861|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046861|-1.1242500|-0.3040039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326056|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046861|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046861|-1.1242500|-0.3040039	chr10	 13497207	 13497660	+	NA	NA	NA	NA	BEND7	NA	chr10:13487207-13515139	inner
LNCA_21_P0013700	0.9014429	A	0.9115109	A	0.993045688110252	0	lncRNA	BC039548	NA	BC039548	NA	Hs.665343	XLOC_l2_014841	NA	NA	THC2608031	NA	"BROAD Institute lincRNA (XLOC_l2_014841), lincRNA [TCONS_l2_00029772]"	chr9:71258539-71258598	hs|9q21.11	Agilent_HUMAN_G3V2	BC039548	BC039548	chr9	 71258539	 71258598	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16001_PI429285431	5.1388226	P	5.28901	P	0.90113340158057	0	lncRNA	17698-1_{1..231}	lnc-SEH1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEH1L-1:1	chr18	 12892040	 12892270	+	lnc-SEH1L-1	lnc-SEH1L-1:1	XLOC_012633	linc-SEH1L	PTPN2	NA	chr18:12882040-12884334	inter
CUST_6904_PI429285431	3.751879	P	4.093815	P	0.788981840430589	0	lncRNA	6854-1_{1..379}	"transcript_id ""ENST00000445242.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445242.1"" | genecode_v17"	chr21	 46756622	 46757000	+	ENSG00000229382.1	ENST00000445242.1	BX322557.13	BX322557.13-001	NA	NA	NA	inter
CUST_40228_PI429285431	0.89911664	A	0.90292305	A	0.997365075164908	0	lncRNA	41050-1_{1..2249}	n408071|NR_027927|lncRNA|Homosapiens||RefGeneNoncode|NR_027927||5.6869700|-0.2154146	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408071|NR_027927|lncRNA|Homosapiens||RefGeneNoncode|NR_027927||5.6869700|-0.2154146	chr3	 15206868	 15209116	-	NA	NA	NA	NA	CAPN7	NA	chr3:15247733-15257466	inter
CUST_41039_PI429285431	2.104887	A	3.3280063	P	0.428355554145743	0	lncRNA	41698-1_{1..615}	n411705|NR_044996|lncRNA|Homosapiens||RefGeneNoncode|NR_044996||-0.9580250|-0.3584432	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n411705|NR_044996|lncRNA|Homosapiens||RefGeneNoncode|NR_044996||-0.9580250|-0.3584432	chr6	 32358286	 32358900	+	NA	NA	NA	NA	BTNL2	NA	chr6:32362513-32371468	inter
CUST_48363_PI429285431	6.023045	P	6.1490555	P	0.916361975327026	0	lncRNA	52218-2_{3001..3349}	hg19_lincRNAsTranscripts_TCONS_l2_00000382 range=chr1:89873151-89892819 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000382 range=chr1:89873151-89892819 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 89876151	 89876499	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31970_PI429285431	4.905818	P	5.5051465	P	0.660061108240691	0	lncRNA	33693-1_{1..2841}	n338528|BC016033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|926|NULL|2.7788000|-0.1515616	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338528|BC016033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|926|NULL|2.7788000|-0.1515616	chr14	103995562	103998402	+	NA	NA	NA	NA	TRMT61A	NA	chr14:103995509-104003410	inner
LNCA_21_P0008642	0.89315826	A	1.9762908	A	0.472002844810558	0	lncRNA	TCONS_00023440	NA	NA	NA	NA	XLOC_011282	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011282), lincRNA [TCONS_00023440]"	chr15:63481392-63481451	hs|15q22.2	Agilent_HUMAN_G3V2	TCONS_00023440	TCONS_00023440	chr15	 63481392	 63481451	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48675_PI429285431	8.422771	P	8.206771	P	1.16150873192572	0	lncRNA	52518-1_{1..249}	hg19_lincRNAsTranscripts_TCONS_l2_00013837 range=chr2:98287111-98288000 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013837 range=chr2:98287111-98288000 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 98287111	 98287359	+	NA	NA	NA	NA	ACTR1B	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10chr2:98277111-98280561"	NA	inter
CUST_45652_PI429285431	5.1141376	P	2.569851	A	5.83319619949164	0	lncRNA	50029-1_{1..2646}	"gi|325652056|ref|NR_028036.2| Homo sapiens Fas (TNF receptor superfamily, member 6) (FAS), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|325652056|ref|NR_028036.2| Homo sapiens Fas (TNF receptor superfamily, member 6) (FAS), transcript variant 7, non-coding RNA"	Chr10	 90750288	 90752933	+	355	NR_028036.2	NA	NA	NA	NA	NA	inter
LNCA_19_P00318679	5.192268	P	5.698831	P	0.703897369630613	0	lncRNA	THC2512099	NA	NA	NA	NA	XLOC_011510	NA	NA	THC2512099	NA	"BROAD Institute lincRNA (XLOC_011510), lincRNA [TCONS_00023706]"	chr15:067279824-067279765	hs|15q22.32	Agilent_HUMAN_G3V2	THC2512099	THC2512099	chr15	 67279765	 67279824	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6946_PI429285431	6.4176054	P	6.357988	P	1.04218933754536	0	lncRNA	6895-1_{1..451}	"transcript_id ""ENST00000438185.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438185.1"" | genecode_v17"	chr22	 23035263	 23035713	-	ENSG00000223999.1	ENST00000438185.1	LL22NC03-102D1.18	LL22NC03-102D1.18-001	NA	NA	NA	inter
CUST_7787_PI429285431	0.89792824	A	0.9075326	A	0.993364875242516	0	lncRNA	9411-1_{1..2677}	lnc-DDX49-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DDX49-1:1	chr19	 19019595	 19022271	+	lnc-DDX49-1	lnc-DDX49-1:1	ENSG00000248819	ENST00000513244	COPE	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_COPE:range=chr19:19010488-190301575'pad=0,hg19_refFlat_COPE:range=chr19:19010488-190301575'pad=0 3'pad=0 strand=- repeatMasking=none,-55.30chr19:19010323-19030199"	NA	inner
CUST_25391_PI429285431	0.8832772	A	1.0161726	A	0.911999285984918	0	lncRNA	26922-1_{1..530}	lnc-RAB1A-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAB1A-4:1	chr2	 65607760	 65608289	-	lnc-RAB1A-4	lnc-RAB1A-4:1	ENSG00000232693.2	AC012370.2	SPRED2	NA	chr2:65597760-65617819	inner
CUST_12582_PI429285431	6.5517106	P	6.769112	P	0.86011328861748	0	lncRNA	14191-1_{1..539}	lnc-RP11-480I12.4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-480I12.4.1-1:1	chr1	202781151	202781689	+	lnc-RP11-480I12.4.1-1	lnc-RP11-480I12.4.1-1:1	XLOC_000527	linc-TMEM183B-1	KDM5B	NA	chr1:202771151-202777549	inter
CUST_31924_PI429285431	4.427323	P	4.917193	P	0.712089260653896	0	lncRNA	33652-1_{1..2635}	n338478|AK057449|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|875|NULL|-0.9023320|-0.1045348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338478|AK057449|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|875|NULL|-0.9023320|-0.1045348	chr19	 19644507	 19647141	-	NA	NA	NA	NA	NDUFA13	"hg19_refFlat_YJEFN3:range=chr19:19639742-196483335'pad=0,hg19_refFlat_YJEFN3:range=chr19:19639742-196483335'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.80chr19:19634507-19639013"	NA	inner
CUST_1640_PI429285431	5.9256234	P	6.2263436	P	0.811847017416003	0	lncRNA	1625-1_{1..486}	"transcript_id ""ENST00000431767.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431767.1"" | genecode_v17"	chr3	195415518	195416003	+	ENSG00000242086.3	ENST00000431767.1	AC069513.3	AC069513.3-012	MUC20	NA	chr3:195447753-195448541	inter
CUST_21933_PI429285431	7.5352535	P	7.815751	P	0.823307058509361	0	lncRNA	23541-1_{1..563}	lnc-AC009113.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC009113.1-2:2	chr16	 89390644	 89391206	+	lnc-AC009113.1-2	lnc-AC009113.1-2:2	ENSG00000261253.1	AC137932.6	LOC100287036	NA	chr16:89387541-89391518	inner
LNCA_21_P0010571	3.264961	P	3.1767173	P	1.06307523382691	0	lncRNA	DQ983818	NA	DQ983818	NA	Hs.576504	C1orf81	chromosome 1 open reading frame 81	NA	NA	NA	"PREDICTED: Homo sapiens chromosome 1 open reading frame 81 (C1orf81), miscRNA [XR_108341]"	chr1:200929523-200934179	hs|1q32.1	Agilent_HUMAN_G3V2	DQ983818	DQ983818	chr1	200929523	200934179	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16478_PI429285431	5.8023014	P	5.934657	P	0.912340584257442	0	lncRNA	18176-1_{1..451}	lnc-VPS13B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VPS13B-1:1	chr8	100014298	100014748	+	lnc-VPS13B-1	lnc-VPS13B-1:1	XLOC_006881	linc-VPS13B	NA	NA	NA	inter
CUST_33926_PI429285431	0.8890701	A	0.89856255	A	0.993441933644871	0	lncRNA	35467-1_{1..1014}	n340724|BC032027|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3187|NULL|-1.0753400|-0.2567059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340724|BC032027|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3187|NULL|-1.0753400|-0.2567059	chr5	168438951	168439964	-	NA	NA	NA	NA	SLIT3	NA	chr5:168428951-168450151	inner
CUST_32479_PI429285431	1.1360446	A	0.8807454	A	1.19358325416234	0	lncRNA	34148-1_{1..2306}	n339082|BC035629|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1512|NULL|-1.0895800|-0.3197333	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339082|BC035629|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1512|NULL|-1.0895800|-0.3197333	chr2	200489253	200491558	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24739_PI429285431	0.88490707	A	0.8831556	A	1.00121476372081	0	lncRNA	26284-1_{1..739}	lnc-CPEB2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CPEB2-4:2	chr4	 14128701	 14129439	+	lnc-CPEB2-4	lnc-CPEB2-4:2	ENSG00000248698.1	RP11-341G5.3	NA	NA	NA	inter
LNCA_21_P0002656	0.885164	A	0.88502353	A	1.00009737112471	0	lncRNA	ENST00000428036	NA	NA	NA	NA	XLOC_002035	NA	ENST00000428036	THC2539754	NA	"BROAD Institute lincRNA (XLOC_002035), lincRNA [TCONS_00005120]"	chr2:28958899-28954797	hs|2p23.2	Agilent_HUMAN_G3V2	ENST00000428036	ENST00000428036	chr2	 28954797	 28958899	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013719	0.88554096	A	1.295375	A	0.752709956494038	0	lncRNA	ENST00000413291	NA	NA	NA	NA	XLOC_l2_015140	NA	ENST00000413291	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015140), lincRNA [TCONS_l2_00029910]"	chr9:32643732-32643673	hs|9p21.1	Agilent_HUMAN_G3V2	ENST00000413291	ENST00000413291	chr9	 32643673	 32643732	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23186_PI429285431	7.972768	P	7.876762	P	1.06881043625941	0	lncRNA	24758-1_{1..469}	lnc-BMI1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BMI1-1:1	chr10	 22701778	 22702246	+	lnc-BMI1-1	lnc-BMI1-1:1	ENSG00000233451.1	RP11-301N24.3	SPAG6	NA	chr10:22691778-22706539	inner
CUST_10684_PI429285431	2.4091678	A	2.82801	A	0.748024692619207	0	lncRNA	12218-1_{1..1040}	lnc-RP11-350F16.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-350F16.2.1-2:1	chr8	 47730635	 47731674	-	lnc-RP11-350F16.2.1-2	lnc-RP11-350F16.2.1-2:1	XLOC_007078	linc-RNF170-1	NA	NA	NA	inter
CUST_47247_PI429285431	0.90975523	A	0.8954553	A	1.00996124230528	0	lncRNA	51320-2_{3001..5481}	"gi|225903417|ref|NR_026714.2| Homo sapiens family with sequence similarity 182, member B (FAM182B), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225903417|ref|NR_026714.2| Homo sapiens family with sequence similarity 182, member B (FAM182B), transcript variant 1, non-coding RNA"	Chr20	 25753234	 25755714	-	728882	NR_026714.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0009506	0.88699603	A	1.3849274	A	0.708121404130563	0	lncRNA	TCONS_00026380	NA	NA	NA	NA	XLOC_012731	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012731), lincRNA [TCONS_00026380]"	chr18:75042239-75042298	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026380	TCONS_00026380	chr18	 75042239	 75042298	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18602_PI429285431	2.208415	A	2.440807	A	0.851222387543936	0	lncRNA	20309-1_{1..341}	lnc-AC005493.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC005493.1-1:1	chr7	 34911111	 34911451	-	lnc-AC005493.1-1	lnc-AC005493.1-1:1	ENSG00000197085	AC005688.1	NPSR1	NA	chr7:34901111-34917944	inner
CUST_35296_PI429285431	4.915428	P	4.984785	P	0.953062677369532	0	lncRNA	36700-1_{1..2322}	n342317|AK021924|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4809|NULL|-0.8613010|-0.3006004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342317|AK021924|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4809|NULL|-0.8613010|-0.3006004	chr1	155839564	155841885	+	NA	NA	NA	NA	SYT11	NA	chr1:155829564-155851887	inner
CUST_22911_PI429285431	1.0884187	A	1.8382841	A	0.594659035180399	0	lncRNA	24488-1_{1..489}	lnc-PANK3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PANK3-4:1	chr5	167393995	167394483	-	lnc-PANK3-4	lnc-PANK3-4:1	ENSG00000253947.1	CTB-77H17.1	ODZ2	NA	chr5:167383995-167404091	inner
CUST_34844_PI429285431	3.8575566	P	4.0810895	P	0.856465536692697	0	lncRNA	36271-2_{3001..4728}	n341747|AK127575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4220|NULL|0.1028620|-0.4106129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341747|AK127575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4220|NULL|0.1028620|-0.4106129	chr9	108533806	108535533	+	NA	NA	NA	NA	TMEM38B	NA	chr9:108520806-108537444	inner
CUST_34809_PI429285431	0.8975809	A	0.90199935	A	0.996942048926054	0	lncRNA	36244-1_{1..1171}	n341716|AK023690|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4188|NULL|0.4294060|-0.2226360	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341716|AK023690|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4188|NULL|0.4294060|-0.2226360	chr9	 90792609	 90793779	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70"	NA	inter
CUST_16127_PI429285431	0.88281655	A	0.8854518	A	0.998175051140336	0	lncRNA	17833-1_{1..529}	lnc-COG6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COG6-2:2	chr13	 40638247	 40638775	+	lnc-COG6-2	lnc-COG6-2:2	XLOC_010355	linc-SLC25A15-3	NA	NA	NA	inter
CUST_26476_PI429285431	4.302757	P	2.837931	A	2.76030177331835	0	lncRNA	27984-1_{1..649}	lnc-RP11-778D12.2.1-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-778D12.2.1-4:7	chr8	106924033	106924681	-	lnc-RP11-778D12.2.1-4	lnc-RP11-778D12.2.1-4:7	ENSG00000251003.2	RP11-152P17.2	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
CUST_3260_PI429285431	2.3977485	A	2.6592295	A	0.834231098971144	0	lncRNA	3238-1_{1..1318}	"transcript_id ""ENST00000521369.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521369.2"" | genecode_v17"	chr8	107282372	107283689	+	ENSG00000254615.2	ENST00000521369.2	RP11-395G23.3	RP11-395G23.3-001	OXR1	NA	chr8:107272372-107295127	inner
CUST_39686_PI429285431	4.2706957	P	4.8380957	P	0.674831863499561	0	lncRNA	40626-1_{1..925}	n405400|NR_002145|lncRNA|Homosapiens||RefGeneNoncode|NR_002145||5.1795400|-0.0771647	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405400|NR_002145|lncRNA|Homosapiens||RefGeneNoncode|NR_002145||5.1795400|-0.0771647	chr1	248153568	248154492	+	NA	NA	NA	NA	OR2L13	NA	chr1:248143568-248164493	inner
CUST_30365_PI429285431	0.8831334	A	0.88452804	A	0.999033776311115	0	lncRNA	32141-1_{1..410}	n335463|AY781815|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257710|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257710|1.5643300|-0.2320342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335463|AY781815|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257710|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257710|1.5643300|-0.2320342	chr14	106068035	106068444	-	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106859077	inter
CUST_7775_PI429285431	4.8219833	P	4.978914	P	0.89693124280885	0	lncRNA	9401-1_{1..3000}	lnc-TSTA3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSTA3-2:1	chr8	144737762	144740761	-	lnc-TSTA3-2	lnc-TSTA3-2:1	ENSG00000245809	ENST00000501748	ZNF623	"hg19_refFlat_ZNF623:range=chr8:144732043-1447336535'pad=0,hg19_refFlat_ZNF623:range=chr8:144732043-1447336535'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.00;hg19_refFlat_ZNF623:range=chr8:144732163-1447336535'pad=0,hg19_refFlat_ZNF623:range=chr8:144732163-1447336535'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70chr8:144727762-144735900"	NA	inter
CUST_27284_PI429285431	0.89481735	A	0.8896399	A	1.00359518208912	0	lncRNA	28839-1_{1..717}	n324432|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041714|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041714|-0.0289358|-0.4277794	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324432|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041714|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041714|-0.0289358|-0.4277794	chr6	108551411	108552127	+	NA	NA	NA	NA	SNX3	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.62;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr6:108541411-108582464"	NA	inner
LNCA_21_P0002242	9.424086	P	9.44533	P	0.985382667132441	0	lncRNA	ENST00000529783	XR_109948	XR_109948	NA	Hs.503348	XLOC_001532	NA	ENST00000529783	THC2616392	NA	"PREDICTED: Homo sapiens hypothetical LOC100507171, transcript variant 2 (LOC100507171), miscRNA [XR_109948]"	chr2:74375293-74375352	hs|2p13.1	Agilent_HUMAN_G3V2	ENST00000529783	ENST00000529783	chr2	 74375293	 74375352	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28606_PI429285431	0.8925251	A	0.8989476	A	0.995558156529711	0	lncRNA	30288-1_{1..570}	n325969|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048111|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048111|-1.3868000|-0.4993020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325969|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048111|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048111|-1.3868000|-0.4993020	chr10	 53881079	 53881648	-	NA	NA	NA	NA	PRKG1	NA	chr10:53871079-53910299	inner
CUST_22012_PI429285431	0.9001678	A	0.9110938	A	0.992455279281107	0	lncRNA	23621-1_{1..686}	lnc-KRT17P1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KRT17P1-1:1	chr17	 16691922	 16692607	-	lnc-KRT17P1-1	lnc-KRT17P1-1:1	ENSG00000264673.1	RP11-92B11.3	NA	NA	NA	inter
CUST_39955_PI429285431	0.8965726	A	0.90303504	A	0.995530595582144	0	lncRNA	40828-1_{1..3000}	n406999|NR_024496|lncRNA|Homosapiens||RefGeneNoncode|NR_024496||1.0873500|-0.2538752	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406999|NR_024496|lncRNA|Homosapiens||RefGeneNoncode|NR_024496||1.0873500|-0.2538752	chr9	 66494268	 66497267	+	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20"	NA	inter
CUST_38027_PI429285431	4.094184	P	4.005434	P	1.06344837536472	0	lncRNA	39112-1_{1..3000}	n377601|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029974||0.6585910|-0.2682644	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377601|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029974||0.6585910|-0.2682644	chr6	  2403916	  2406915	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10"	NA	inter
CUST_16394_PI429285431	0.881109	A	0.8825644	A	0.99899170226753	0	lncRNA	18090-1_{1..264}	lnc-TTF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTF2-1:1	chr1	117647416	117647679	+	lnc-TTF2-1	lnc-TTF2-1:1	XLOC_000363	linc-MAN1A2-2	TTF2	NA	chr1:117637416-117645492	inter
CUST_44048_PI429285431	3.2403886	P	2.284524	A	1.93974176324763	0	lncRNA	48724-2_{3001..6000}	"gi|401709976|ref|NR_073108.1| Homo sapiens Kruppel-like factor 7 (ubiquitous) (KLF7), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|401709976|ref|NR_073108.1| Homo sapiens Kruppel-like factor 7 (ubiquitous) (KLF7), transcript variant 5, non-coding RNA"	Chr2	207941861	207944860	-	8609	NR_073108.1	NA	NA	NA	NA	NA	inter
CUST_34082_PI429285431	1.6644986	A	2.1500168	A	0.714240476561629	0	lncRNA	35611-1_{1..1529}	n340907|CR620279|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3372|NULL|5.9978000|-0.0983829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340907|CR620279|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3372|NULL|5.9978000|-0.0983829	chr17	 76498224	 76499752	-	NA	NA	NA	NA	DNAH17	NA	chr17:76488224-76516753	inner
LNCA_21_P0003636	0.88966787	A	0.88972956	A	0.999957240664638	0	lncRNA	TCONS_00008197	NA	NA	NA	NA	XLOC_003649	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003649), lincRNA [TCONS_00008197]"	chr4:112725935-112725994	hs|4q25	Agilent_HUMAN_G3V2	TCONS_00008197	TCONS_00008197	chr4	112725935	112725994	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35768_PI429285431	1.6032646	A	1.6830814	A	0.946177789070841	0	lncRNA	37186-2_{3001..6000}	n344456|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_4|NULL|-1.5042800|-0.3122013	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344456|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_4|NULL|-1.5042800|-0.3122013	chr7	130568957	130571956	+	NA	NA	NA	NA	MKLN1	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50chr7:130794855-130803564"	NA	inter
CUST_30796_PI429285431	6.8522882	P	5.372304	P	2.78945678316868	0	lncRNA	32583-1_{1..287}	n336685|Z70221|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327867|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327867|0.9849490|-0.2596324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336685|Z70221|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327867|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327867|0.9849490|-0.2596324	chr2	201676612	201676898	+	NA	NA	NA	NA	BZW1	NA	chr2:201676269-201688569	inner
CUST_7722_PI429285431	0.91165096	A	0.9839942	A	0.951091969568687	0	lncRNA	9353-1_{1..971}	lnc-CAMK1G-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CAMK1G-1:8	chr1	209603770	209604740	+	lnc-CAMK1G-1	lnc-CAMK1G-1:8	ENSG00000230937	CTA-55I10.1	LOC642587	NA	chr1:209602168-209605894	inner
CUST_21879_PI429285431	1.3473443	A	1.8268099	A	0.71724325451436	0	lncRNA	23488-2_{3001..4037}	lnc-HSD17B2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-HSD17B2-2:1	chr16	 82865870	 82866906	+	lnc-HSD17B2-2	lnc-HSD17B2-2:1	ENSG00000260862.1	RP11-22H5.2	CDH13	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70chr16:82852870-82873243"	NA	inner
CUST_46237_PI429285431	5.1930814	P	4.9328365	P	1.19768199597211	0	lncRNA	50477-1_{1..3000}	"gi|310123054|ref|XR_110128.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 402 (LINC00402), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310123054|ref|XR_110128.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 402 (LINC00402), misc_RNA"	NA	NA	NA	NA	NA	XR_110128.1	NA	NA	NA	NA	NA	Unknown
CUST_46355_PI429285431	1.0489917	A	0.9060543	A	1.10415093589547	0	lncRNA	50579-1_{1..1625}	"gi|334883150|ref|NR_038355.1| Homo sapiens DIO2 antisense RNA 1 (DIO2-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|334883150|ref|NR_038355.1| Homo sapiens DIO2 antisense RNA 1 (DIO2-AS1), non-coding RNA"	Chr14	 80677762	 80679386	+	100628307	NR_038355.1	NA	NA	NA	"hg19_refFlat_DIO2:range=chr14:80671968-806778155'pad=0,hg19_refFlat_DIO2:range=chr14:80671968-806778155'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_DIO2:range=chr14:80669032-806778155'pad=0,hg19_refFlat_DIO2:range=chr14:80669032-806778155'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50"	NA	inter
CUST_2322_PI429285431	0.91872424	A	0.9119958	A	1.00467469165393	0	lncRNA	2314-1_{1..420}	"transcript_id ""ENST00000511418.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511418.1"" | genecode_v17"	chr5	116366896	116367315	+	ENSG00000250949.1	ENST00000511418.1	RP11-492L8.2	RP11-492L8.2-001	NA	NA	NA	inter
CUST_44756_PI429285431	2.434434	A	1.6677995	A	1.70129638897592	0	lncRNA	49302-1_{1..2635}	"gi|410170499|ref|XR_108650.3| PREDICTED: Homo sapiens FLJ38717 protein (FLJ38717), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170499|ref|XR_108650.3| PREDICTED: Homo sapiens FLJ38717 protein (FLJ38717), misc_RNA"	Chr6	 42750665	 42753299	+	401261	XR_108650.3	NA	NA	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_35866_PI429285431	1.0989099	A	1.2999551	A	0.869920097465334	0	lncRNA	37259-2_{3001..3145}	n344531|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_79|NULL|-1.6447100|-0.2367879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344531|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_79|NULL|-1.6447100|-0.2367879	chr12	 30951614	 30951758	+	NA	NA	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_38589_PI429285431	0.9088749	A	0.9002596	A	1.00598953687691	0	lncRNA	39599-1_{1..1179}	n383659|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002snv.3||1.7172200|-0.2656140	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n383659|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002snv.3||1.7172200|-0.2656140	chr2	 78639672	 78640850	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007545	5.1169596	P	5.457301	P	0.789854378252738	0	lncRNA	TCONS_00020388	NA	NA	NA	NA	XLOC_009723	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009723), lincRNA [TCONS_00020388]"	chr12:46777149-46781580	hs|12q13.11	Agilent_HUMAN_G3V2	TCONS_00020388	TCONS_00020388	chr12	 46777149	 46781580	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47168_PI429285431	1.5613542	A	1.8816454	A	0.800908202390746	0	lncRNA	51245-1_{1..1182}	"gi|310123939|ref|XR_109493.1| PREDICTED: Homo sapiens uncharacterized LOC100506114 (LOC100506114), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">gi|310123939|ref|XR_109493.1| PREDICTED: Homo sapiens uncharacterized LOC100506114 (LOC100506114), misc_RNA"	Chr19	 50990067	 50991248	-	100506114	XR_109493.2	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50"	NA	inter
LNCA_21_P0006482	1.3126853	A	0.9243715	A	1.30886273068555	0	lncRNA	TCONS_00017139	NA	NA	NA	NA	XLOC_007929	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007929), lincRNA [TCONS_00017139]"	chrX:13104090-13104149	hs|Xp22.2	Agilent_HUMAN_G3V2	TCONS_00017139	TCONS_00017139	chrX	 13104090	 13104149	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12365_PI429285431	0.9242132	A	0.91655695	A	1.00532101468103	0	lncRNA	13977-1_{1..366}	lnc-SOX1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOX1-3:1	chr13	112855110	112855475	+	lnc-SOX1-3	lnc-SOX1-3:1	XLOC_010505	linc-C13orf28-3	NA	NA	NA	inter
CUST_23448_PI429285431	0.89367354	A	0.8965205	A	0.998028583502078	0	lncRNA	25015-1_{1..251}	lnc-PLCB4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PLCB4-2:2	chr20	  8237380	  8237630	+	lnc-PLCB4-2	lnc-PLCB4-2:2	ENSG00000225479.1	PLCB1-IT1	PLCB1	NA	chr20:8227380-8247564	inner
CUST_1111_PI429285431	0.90231764	A	0.9013652	A	1.00066039906816	0	lncRNA	1100-1_{1..897}	"transcript_id ""ENST00000602108.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000602108.1"" | genecode_v17"	chr2	145780739	145781635	+	ENSG00000226674.3	ENST00000602108.1	AC074093.1	AC074093.1-012	NA	NA	NA	inter
CUST_47016_PI429285431	4.699024	P	5.142563	P	0.735328598183125	0	lncRNA	51111-1_{1..3000}	"gi|256017225|ref|NR_028339.1| Homo sapiens PARD6G antisense RNA 1 (PARD6G-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|256017225|ref|NR_028339.1| Homo sapiens PARD6G antisense RNA 1 (PARD6G-AS1), transcript variant 1, non-coding RNA"	Chr18	 77905807	 77908806	+	100130522	NR_028339.1	NA	NA	NA	NA	NA	inter
CUST_5196_PI429285431	1.8469541	A	1.0772855	A	1.70487811274762	0	lncRNA	5137-1_{1..800}	"transcript_id ""ENST00000566990.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566990.1"" | genecode_v17"	chr15	 57819385	 57820184	-	ENSG00000261265.1	ENST00000566990.1	CTD-2515H24.4	CTD-2515H24.4-001	CGNL1	"hg19_refFlat_CGNL1:range=chr15:57730198-578396885'pad=0,hg19_refFlat_CGNL1:range=chr15:57730198-578396885'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70chr15:57809385-57831207"	NA	inner
CUST_33635_PI429285431	0.8898027	A	1.0638287	A	0.886365725121441	0	lncRNA	35200-1_{1..297}	n340397|U52833|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2858|NULL|-1.1864200|-0.2934345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340397|U52833|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2858|NULL|-1.1864200|-0.2934345	chr5	 10711425	 10711721	-	NA	NA	NA	NA	DAP	NA	chr5:10701425-10721722	inner
CUST_41865_PI429285431	4.158732	P	4.573786	P	0.749991421977795	0	lncRNA	43525-1_{1..79}	ENST00000401258 ncrna:miRNA chromosome:GRCh37:5:15935291:15935369:1 gene:ENSG00000216077 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401258 ncrna:miRNA chromosome:GRCh37:5:15935291:15935369:1 gene:ENSG00000216077 gene_biotype:miRNA transcript_biotype:miRNA	chr5	 15935291	 15935369	+	ENSG00000216077	ENST00000401258	NA	NA	FBXL7	NA	chr5:15925291-15939900	inner
CUST_41886_PI429285431	4.8402905	P	4.994397	P	0.89868878279933	0	lncRNA	43573-1_{1..80}	ENST00000579686 ncrna:miRNA chromosome:GRCh37:14:23426159:23426238:-1 gene:ENSG00000265037 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579686 ncrna:miRNA chromosome:GRCh37:14:23426159:23426238:-1 gene:ENSG00000265037 gene_biotype:miRNA transcript_biotype:miRNA	chr14	 23426159	 23426238	-	ENSG00000265037	ENST00000579686	NA	NA	HAUS4	NA	chr14:23416159-23426351	inter
CUST_33328_PI429285431	1.2624931	A	0.9057827	A	1.28050279325881	0	lncRNA	34911-1_{1..1464}	n340045|AK027280|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2500|NULL|5.2789500|-0.3403783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340045|AK027280|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2500|NULL|5.2789500|-0.3403783	chr10	 64974646	 64976109	-	NA	NA	NA	NA	JMJD1C	NA	chr10:64964646-65225722	inner
CUST_31543_PI429285431	3.1922748	A	3.025124	A	1.12283878245433	0	lncRNA	33302-1_{1..2366}	n338031|AK127738|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|418|NULL|-0.9996770|-0.1805726	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338031|AK127738|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|418|NULL|-0.9996770|-0.1805726	chr15	 76467231	 76469596	-	NA	NA	NA	NA	C15orf27	"hg19_refFlat_C15orf27:range=chr15:76426605-764966565'pad=0,hg19_refFlat_C15orf27:range=chr15:76426605-764966565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00chr15:76457231-76483827"	NA	inner
CUST_7320_PI429285431	0.9087014	A	0.91799915	A	0.993576013399336	0	lncRNA	8563-1_{1..354}	"transcript_id ""ENST00000410443.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410443.1"" | genecode_v17"	chr16	 29742372	 29742725	-	ENSG00000222375.1	ENST00000410443.1	RN7SKP127	RN7SKP127-201	NA	NA	NA	inter
CUST_2071_PI429285431	1.2424232	A	0.9048529	A	1.26362667707624	0	lncRNA	2062-1_{1..564}	"transcript_id ""ENST00000504494.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504494.1"" | genecode_v17"	chr5	  7344692	  7345255	+	ENSG00000251678.1	ENST00000504494.1	CTD-2296D1.1	CTD-2296D1.1-001	NA	NA	NA	inter
CUST_20296_PI429285431	1.3473079	A	1.330403	A	1.01178650358555	0	lncRNA	21940-1_{1..841}	lnc-SNX17-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SNX17-2:1	chr2	 27560304	 27561144	+	lnc-SNX17-2	lnc-SNX17-2:1	ENSG00000234945.1	AC109828.1	GTF3C2	"hg19_refFlat_GTF3C2:range=chr2:27549542-275664215'pad=0,hg19_refFlat_GTF3C2:range=chr2:27549542-275664215'pad=0 3'pad=0 strand=- repeatMasking=none,-100.80chr2:27550304-27570670"	NA	inner
CUST_4487_PI429285431	0.90615344	A	0.91424817	A	0.994404872083428	0	lncRNA	4436-1_{1..2126}	"transcript_id ""ENST00000345111.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000345111.3"" | genecode_v17"	chr12	127227282	127229407	+	ENSG00000189238.4	ENST00000345111.3	RP11-173C20.1	RP11-173C20.1-003	NA	NA	NA	inter
CUST_48876_PI429285431	0.89853	A	0.9128607	A	0.990115887819813	0	lncRNA	52713-1_{1..305}	hg19_lincRNAsTranscripts_TCONS_l2_00019332 range=chr3:63727851-63735595 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019332 range=chr3:63727851-63735595 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 63727851	 63728155	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28691_PI429285431	5.1788917	P	5.489354	P	0.806383318780438	0	lncRNA	30389-1_{1..436}	n326078|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046671|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046671|-1.1405800|-0.2122766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326078|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046671|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046671|-1.1405800|-0.2122766	chr10	  7179119	  7179554	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011015	7.7974586	P	6.6030145	P	2.2885663197226	0	lncRNA	TCONS_l2_00005178	NA	NA	NA	NA	XLOC_l2_002761	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002761), lincRNA [TCONS_l2_00005178]"	chr11:104777734-104776256	hs|11q22.3	Agilent_HUMAN_G3V2	TCONS_l2_00005178	TCONS_l2_00005178	chr11	104776256	104777734	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008736	0.8878574	A	1.6050335	A	0.608286925325411	0	lncRNA	TCONS_00023671	NA	NA	NA	NA	XLOC_011470	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011470), lincRNA [TCONS_00023671]"	chr15:48106361-48106302	hs|15q21.1	Agilent_HUMAN_G3V2	TCONS_00023671	TCONS_00023671	chr15	 48106302	 48106361	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36513_PI429285431	1.6521592	A	1.006997	A	1.56391510496015	0	lncRNA	37713-1_{1..3000}	n345014|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_563|NULL|-1.3270700|-0.3399399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345014|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_563|NULL|-1.3270700|-0.3399399	chr8	 95992951	 95995950	+	NA	NA	NA	NA	NA	"hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00"	NA	inter
CUST_50604_PI429285431	0.99249816	A	1.5761553	A	0.66727014437661	0	lncRNA	54291-1_{1..379}	hg19_lincRNAsTranscripts_TCONS_l2_00003828 range=chr10:131834198-131909081 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003828 range=chr10:131834198-131909081 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	131834198	131834576	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20517_PI429285431	0.8793834	A	1.6380503	A	0.591042221872542	0	lncRNA	22159-1_{1..470}	lnc-FRMPD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FRMPD2-1:1	chr10	 49719578	 49720047	-	lnc-FRMPD2-1	lnc-FRMPD2-1:1	ENSG00000248682.1	ARHGAP22-IT1	ARHGAP22	NA	chr10:49709578-49729632	inner
CUST_22333_PI429285431	2.8696096	A	3.14166	P	0.828141730014291	0	lncRNA	23928-5_{12001..14892}	lnc-RP11-324D17.2.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-324D17.2.1-3:1	chr16	 54045349	 54048240	+	lnc-RP11-324D17.2.1-3	lnc-RP11-324D17.2.1-3:1	ENSG00000261389.1	RP11-357N13.7	FTO	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-23.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10chr16:54023349-54058240"	NA	inner
LNCA_21_P0012259	2.9079044	A	3.1180882	P	0.86442709588981	0	lncRNA	TCONS_l2_00017650	NA	NA	NA	NA	XLOC_l2_009328	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009328), lincRNA [TCONS_l2_00017650]"	chr22:24663001-24663060	hs|22q11.23	Agilent_HUMAN_G3V2	TCONS_l2_00017650	TCONS_l2_00017650	chr22	 24663001	 24663060	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50945_PI429285431	6.9022164	P	6.817725	P	1.06031387808391	0	lncRNA	54587-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00006264 range=chr12:55803574-55808808 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006264 range=chr12:55803574-55808808 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 55803574	 55806573	-	NA	NA	NA	NA	OR6C65	NA	chr12:55793574-55795251	inter
CUST_19459_PI429285431	2.7352316	A	1.7040652	A	2.04367586877826	0	lncRNA	21118-1_{1..270}	lnc-LDHC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-LDHC-1:1	chr11	 18428199	 18428468	+	lnc-LDHC-1	lnc-LDHC-1:1	ENSG00000256006.1	AC084117.3	LDHC	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00chr11:18433853-18438278"	NA	inner
CUST_2868_PI429285431	4.317165	P	4.7806034	P	0.725255682832802	0	lncRNA	2849-1_{1..439}	"transcript_id ""ENST00000413094.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413094.1"" | genecode_v17"	chr7	 68652820	 68653258	-	ENSG00000236839.1	ENST00000413094.1	RP11-3P22.1	RP11-3P22.1-001	NA	NA	NA	inter
CUST_17121_PI429285431	0.9106464	A	0.9152184	A	0.996835947289065	0	lncRNA	18831-1_{1..510}	lnc-TSHZ2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSHZ2-3:1	chr20	 51307061	 51307570	+	lnc-TSHZ2-3	lnc-TSHZ2-3:1	XLOC_013567	linc-TSHZ2-1	NA	NA	NA	inter
CUST_7848_PI429285431	0.88728076	A	0.89214313	A	0.996635335157628	0	lncRNA	9472-1_{1..1493}	lnc-RP11-770J1.4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-770J1.4.1-1:1	chr11	118308733	118310225	-	lnc-RP11-770J1.4.1-1	lnc-RP11-770J1.4.1-1:1	ENSG00000245740	ENST00000502111	MLL	NA	chr11:118307205-118319873	inner
CUST_20834_PI429285431	2.1758144	A	1.2668207	A	1.87773529486737	0	lncRNA	22465-1_{1..584}	lnc-ATP2B2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-ATP2B2-3:1	chr3	 11060806	 11061389	-	lnc-ATP2B2-3	lnc-ATP2B2-3:1	ENSG00000232287.2	SLC6A1-AS1	SLC6A1	NA	chr3:11050806-11070910	inter
CUST_27568_PI429285431	6.8335114	P	7.1325665	P	0.812784559190683	0	lncRNA	29147-1_{1..2198}	n324768|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206885|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206885|-0.7870460|-0.1747727	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324768|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206885|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206885|-0.7870460|-0.1747727	chr21	 46281393	 46283590	+	NA	NA	NA	NA	PTTG1IP	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.51;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60chr21:46271393-46293818"	NA	inner
CUST_48068_PI429285431	3.2027128	P	3.1126933	A	1.06438456897181	0	lncRNA	51944-1_{1..2901}	"gi|310114352|ref|XR_112457.1| PREDICTED: Homo sapiens uncharacterized LOC442075 (LOC442075), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310114352|ref|XR_112457.1| PREDICTED: Homo sapiens uncharacterized LOC442075 (LOC442075), misc_RNA"	NA	NA	NA	NA	NA	XR_112457.1	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10"	NA	Unknown
CUST_25588_PI429285431	4.3323827	P	4.368237	P	0.975453969155988	0	lncRNA	27118-1_{1..1579}	lnc-SAP30-5:27	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:27	chr4	174505787	174507365	+	lnc-SAP30-5	lnc-SAP30-5:27	ENSG00000237125.3	RP11-471J12.1	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90"	NA	inter
CUST_27676_PI429285431	0.8985371	A	0.97562855	A	0.947966873206394	0	lncRNA	29254-1_{1..2004}	n324883|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170849|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170849|-0.8016770|-0.3778549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324883|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170849|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170849|-0.8016770|-0.3778549	chr21	 21036783	 21038786	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48879_PI429285431	6.696762	P	6.6638913	P	1.02304577624203	0	lncRNA	52716-1_{1..2053}	hg19_lincRNAsTranscripts_TCONS_l2_00019352 range=chr3:72146448-72149550 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019352 range=chr3:72146448-72149550 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 72146448	 72148500	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4420_PI429285431	7.7465525	P	8.474668	P	0.603691963135915	0	lncRNA	4370-1_{1..1121}	"transcript_id ""ENST00000603439.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603439.1"" | genecode_v17"	chr12	115737393	115738513	-	ENSG00000271579.1	ENST00000603439.1	RP11-116D17.3	RP11-116D17.3-001	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10"	NA	inter
LNCA_21_P0005093	0.88679016	A	0.9074672	A	0.985769985540664	0	lncRNA	TCONS_00012373	NA	NA	NA	NA	XLOC_005939	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005939), lincRNA [TCONS_00012373]"	chr6:169827509-169827450	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012373	TCONS_00012373	chr6	169827450	169827509	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46566_PI429285431	4.606307	P	5.882398	P	0.412912786597049	0	lncRNA	50750-1_{1..2073}	"gi|379317158|ref|NR_046417.1| Homo sapiens olfactory receptor, family 4, subfamily F, member 13 pseudogene (OR4F13P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379317158|ref|NR_046417.1| Homo sapiens olfactory receptor, family 4, subfamily F, member 13 pseudogene (OR4F13P), non-coding RNA"	Chr15	102382322	102384394	+	390651	NR_046417.1	NA	NA	NA	NA	NA	inter
CUST_41852_PI429285431	3.175054	P	3.3915284	P	0.860666129800399	0	lncRNA	43501-1_{1..76}	ENST00000583479 ncrna:miRNA chromosome:GRCh37:1:161196976:161197051:1 gene:ENSG00000263548 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583479 ncrna:miRNA chromosome:GRCh37:1:161196976:161197051:1 gene:ENSG00000263548 gene_biotype:miRNA transcript_biotype:miRNA	chr1	161196976	161197051	+	ENSG00000263548	ENST00000583479	NA	NA	NR1I3	NA	chr1:161199456-161207051	inter
CUST_4031_PI429285431	0.8836795	A	0.88043284	A	1.00225294730563	0	lncRNA	3993-1_{1..740}	"transcript_id ""ENST00000527364.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527364.1"" | genecode_v17"	chr11	 82314785	 82315524	-	ENSG00000255246.1	ENST00000527364.1	RP11-179A16.2	RP11-179A16.2-001	NA	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0,hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10"	NA	inter
CUST_12937_PI429285431	8.7077675	P	9.211831	P	0.705117943901481	0	lncRNA	14565-1_{1..234}	lnc-SBDS-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SBDS-10:1	chr7	 68769075	 68769308	-	lnc-SBDS-10	lnc-SBDS-10:1	XLOC_006491	linc-SBDS-9	NA	NA	NA	inter
CUST_26298_PI429285431	2.010303	A	1.5623277	A	1.36412447986521	0	lncRNA	27805-1_{1..458}	lnc-NOC3L-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NOC3L-3:5	chr10	 95867489	 95867946	-	lnc-NOC3L-3	lnc-NOC3L-3:5	ENSG00000232913.1	RP11-429H9.4	PLCE1	NA	chr10:95857489-95877629	inner
CUST_47356_PI429285431	3.09884	P	3.1722338	A	0.950399643441517	0	lncRNA	51407-1_{1..2014}	"gi|197116379|ref|NR_024090.1| Homo sapiens long intergenic non-protein coding RNA 320 (LINC00320), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|197116379|ref|NR_024090.1| Homo sapiens long intergenic non-protein coding RNA 320 (LINC00320), non-coding RNA"	Chr21	 22114913	 22116926	-	387486	NR_024090.1	NA	NA	NA	NA	NA	inter
CUST_21039_PI429285431	4.2616863	P	4.8979864	P	0.643360782022674	0	lncRNA	22666-1_{1..453}	lnc-AC108463.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC108463.1-1:1	chr2	111873097	111873549	-	lnc-AC108463.1-1	lnc-AC108463.1-1:1	ENSG00000204581.2	AC096670.3	ACOXL	NA	chr2:111863097-111875799	inner
CUST_25372_PI429285431	8.938568	P	8.93183	P	1.00468134913981	0	lncRNA	26903-1_{1..444}	lnc-MAP6-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP6-4:1	chr11	 75526151	 75526594	-	lnc-MAP6-4	lnc-MAP6-4:1	ENSG00000255507.1	RP11-535A19.2	UVRAG	NA	chr11:75526212-75536451	inner
CUST_4025_PI429285431	0.8875353	A	0.892663	A	0.996452058074958	0	lncRNA	3986-1_{1..374}	"transcript_id ""ENST00000527440.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527440.1"" | genecode_v17"	chr11	 78902603	 78902976	+	ENSG00000254885.1	ENST00000527440.1	RP11-802F5.1	RP11-802F5.1-001	ODZ4	NA	chr11:78892603-78914205	inner
CUST_44713_PI429285431	1.4205046	A	1.1006492	A	1.24820543614635	0	lncRNA	49268-1_{1..1742}	"gi|223468623|ref|NR_026791.1| Homo sapiens HLA complex group 27 (non-protein coding) (HCG27), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223468623|ref|NR_026791.1| Homo sapiens HLA complex group 27 (non-protein coding) (HCG27), non-coding RNA"	Chr6	 31165537	 31167278	+	253018	NR_026791.1	NA	NA	NA	NA	NA	inter
CUST_29430_PI429285431	6.6307273	P	6.8352685	P	0.867814622144922	0	lncRNA	31186-1_{1..263}	n332815|AF058804|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064809|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064809|-0.8819030|-0.0161171	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332815|AF058804|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064809|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064809|-0.8819030|-0.0161171	chr3	195505665	195505927	-	NA	NA	NA	NA	MUC4	NA	chr3:195495665-195515928	inner
LNCA_21_P0007622	3.3675697	P	3.434276	P	0.954815373116876	0	lncRNA	TCONS_00020558	NA	NA	NA	NA	XLOC_009872	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009872), lincRNA [TCONS_00020558]"	chr12:108307718-108307777	hs|12q23.3	Agilent_HUMAN_G3V2	TCONS_00020558	TCONS_00020558	chr12	108307718	108307777	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34356_PI429285431	0.91120726	A	0.89911664	A	1.00841579452408	0	lncRNA	35844-2_{3001..4145}	n341225|AK124585|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3693|NULL|-1.0618800|-0.3093135	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341225|AK124585|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3693|NULL|-1.0618800|-0.3093135	chr7	 38832643	 38833787	-	NA	NA	NA	NA	VPS41	NA	chr7:38819643-38843785	inner
CUST_39547_PI429285431	1.8194524	A	1.3960968	A	1.3410430953564	0	lncRNA	40492-1_{1..1551}	n387473|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ewo.1||-1.1069600|-0.2845443	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387473|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ewo.1||-1.1069600|-0.2845443	chr6	  1485461	  1487011	+	NA	NA	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10"	NA	inter
CUST_25827_PI429285431	3.0945055	A	4.219616	P	0.458466905010308	0	lncRNA	27348-1_{1..339}	lnc-ZNF705A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF705A-1:1	chr12	  8341068	  8341406	+	lnc-ZNF705A-1	lnc-ZNF705A-1:1	ENSG00000256703.1	RP11-266K4.7	ZNF705A	NA	chr12:8331068-8332642	inter
CUST_35385_PI429285431	1.0515536	A	1.4293256	A	0.769625230161217	0	lncRNA	36794-1_{1..2044}	n342435|BC017357|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4928|NULL|0.9547010|-0.1622040	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342435|BC017357|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4928|NULL|0.9547010|-0.1622040	chr19	 53901194	 53903237	+	NA	NA	NA	NA	ZNF765	NA	chr19:53898397-53915262	inner
CUST_50345_PI429285431	2.452467	A	1.3213878	A	2.19022517564056	0	lncRNA	54059-2_{3001..3474}	hg19_lincRNAsTranscripts_TCONS_l2_00029619 range=chr9:136100111-136106316 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029619 range=chr9:136100111-136106316 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	136103111	136103584	-	NA	NA	NA	NA	ABO	NA	chr9:136100292-136116316	inter
CUST_34866_PI429285431	7.471425	P	7.3515396	P	1.08664854153274	0	lncRNA	36292-1_{1..338}	n341777|X64979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4254|NULL|2.1732100|-0.1722357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341777|X64979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4254|NULL|2.1732100|-0.1722357	chr9	125281793	125282130	+	NA	NA	NA	NA	OR1N1	NA	chr9:125288637-125289572	inner
CUST_3925_PI429285431	6.28578	P	6.6975408	P	0.751705362055792	0	lncRNA	3895-1_{1..447}	"transcript_id ""ENST00000525641.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525641.1"" | genecode_v17"	chr11	 42204842	 42205288	-	ENSG00000255109.1	ENST00000525641.1	CTD-2572N17.1	CTD-2572N17.1-003	NA	NA	NA	inter
LNCA_21_P0002075	0.8918512	A	0.8918208	A	1.0000210718963	0	lncRNA	ENST00000448595	NA	NA	NA	NA	XLOC_002221	NA	ENST00000448595	THC2642798	NA	"BROAD Institute lincRNA (XLOC_002221), lincRNA [TCONS_00003339]"	chr2:99388148-99388089	hs|2q11.2	Agilent_HUMAN_G3V2	ENST00000448595	ENST00000448595	chr2	 99388089	 99388148	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007505	3.036585	P	3.45565	P	0.747909181697948	0	lncRNA	AB062488	NA	AB062488	NA	Hs.497125	XLOC_009920	NA	NA	THC2486621	NA	"BROAD Institute lincRNA (XLOC_009920), lincRNA [TCONS_00020239]"	chr12:122513974-122514033	hs|12q24.31	Agilent_HUMAN_G3V2	AB062488	AB062488	chr12	122513974	122514033	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5023_PI429285431	1.2410027	A	1.2184255	A	1.01577241443611	0	lncRNA	4963-1_{1..800}	"transcript_id ""ENST00000414488.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414488.1"" | genecode_v17"	chr14	101415315	101416114	+	ENSG00000225746.4	ENST00000414488.1	AL132709.5	AL132709.5-008	NA	NA	NA	inter
LNCA_21_P0003680	0.8907249	A	1.2039939	A	0.804816060370652	0	lncRNA	TCONS_00008337	NA	NA	NA	NA	XLOC_003787	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003787), lincRNA [TCONS_00008337]"	chr4:175451293-175451352	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_00008337	TCONS_00008337	chr4	175451293	175451352	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44795_PI429285431	12.003784	P	12.050854	P	0.967900062950416	0	lncRNA	49331-1_{1..737}	"gi|300795938|ref|NR_034111.1| Homo sapiens TRAF3IP2 antisense RNA 1 (TRAF3IP2-AS1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300795938|ref|NR_034111.1| Homo sapiens TRAF3IP2 antisense RNA 1 (TRAF3IP2-AS1), transcript variant 4, non-coding RNA"	Chr6	111804675	111805411	+	643749	NR_034111.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008209	1.5011247	A	1.1677015	A	1.25999953386295	0	lncRNA	TCONS_00022102	NA	NA	NA	NA	XLOC_010713	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010713), lincRNA [TCONS_00022102]"	chr13:106249861-106249802	hs|13q33.2	Agilent_HUMAN_G3V2	TCONS_00022102	TCONS_00022102	chr13	106249802	106249861	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23404_PI429285431	0.9061614	A	0.9096983	A	0.997551410435091	0	lncRNA	24972-1_{1..331}	lnc-FAM69C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM69C-1:1	chr18	 72229232	 72229562	-	lnc-FAM69C-1	lnc-FAM69C-1:1	ENSG00000264340.1	RP11-231E4.3	CNDP1	"hg19_refFlat_CNDP1:range=chr18:72201903-722517985'pad=0,hg19_refFlat_CNDP1:range=chr18:72201903-722517985'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90chr18:72219232-72239335"	NA	inner
CUST_13010_PI429285431	0.8874935	A	0.90051806	A	0.991012692422904	0	lncRNA	14636-1_{1..834}	lnc-PFKP-16:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PFKP-16:2	chr10	  4006341	  4007174	+	lnc-PFKP-16	lnc-PFKP-16:2	XLOC_008357	linc-AKR1E2-6	NA	NA	NA	inter
CUST_42761_PI429285431	7.3657894	P	7.6817346	P	0.803324510029647	0	lncRNA	45729-1_{1..83}	ENST00000516215 ncrna:snoRNA chromosome:GRCh37:22:20455450:20455532:1 gene:ENSG00000252024 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516215 ncrna:snoRNA chromosome:GRCh37:22:20455450:20455532:1 gene:ENSG00000252024 gene_biotype:snoRNA transcript_biotype:snoRNA	chr22	 20455450	 20455532	+	ENSG00000252024	ENST00000516215	NA	NA	RIMBP3	NA	chr22:20455991-20461786	inter
CUST_17482_PI429285431	1.1939614	A	0.93466854	A	1.19689190174351	0	lncRNA	19209-1_{1..932}	lnc-KLF7-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF7-1:6	chr2	208118913	208119844	-	lnc-KLF7-1	lnc-KLF7-1:6	XLOC_002473	linc-KLF7-2	NA	NA	NA	inter
CUST_2675_PI429285431	0.8864384	A	2.1377866	A	0.42005548187415	0	lncRNA	2661-1_{1..533}	"transcript_id ""ENST00000449072.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449072.1"" | genecode_v17"	chr6	156814360	156814892	-	ENSG00000227360.1	ENST00000449072.1	RP11-518I13.1	RP11-518I13.1-002	NA	NA	NA	inter
CUST_24458_PI429285431	7.4392066	P	7.5814824	P	0.906088704738539	0	lncRNA	26011-1_{1..230}	lnc-FAM72A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM72A-2:1	chr1	205904736	205904965	+	lnc-FAM72A-2	lnc-FAM72A-2:1	ENSG00000227687.1	RP4-681L3.2	SLC26A9	"hg19_refFlat_SLC26A9:range=chr1:205884020-2059049485'pad=0,hg19_refFlat_SLC26A9:range=chr1:205884020-2059049485'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SLC26A9:range=chr1:205884485-2059049485'pad=0,hg19_refFlat_SLC26A9:range=chr1:205884485-2059049485'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50chr1:205894736-205912588"	NA	inner
CUST_51195_PI429285431	1.0355985	A	0.90889007	A	1.09179986968511	0	lncRNA	54815-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008933 range=chr15:23186906-23208186 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008933 range=chr15:23186906-23208186 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 23186906	 23189905	-	NA	NA	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
LNCA_21_P0007392	0.90838724	A	0.92646766	A	0.987545811247349	0	lncRNA	TCONS_00019743	NA	NA	NA	NA	XLOC_009537	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009537), lincRNA [TCONS_00019743]"	chr11:103713594-103713535	hs|11q22.3	Agilent_HUMAN_G3V2	TCONS_00019743	TCONS_00019743	chr11	103713535	103713594	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16876_PI429285431	9.0918255	P	8.963077	P	1.09334484187346	0	lncRNA	18583-1_{1..307}	lnc-GPR83-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR83-2:1	chr11	 93932662	 93932968	-	lnc-GPR83-2	lnc-GPR83-2:1	XLOC_009524	linc-C11orf90-2	NA	NA	NA	inter
CUST_33077_PI429285431	0.89790154	A	0.9122952	A	0.990072679564205	0	lncRNA	34683-1_{1..909}	n339765|BC039671|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2212|NULL|-0.9593550|-0.2461742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339765|BC039671|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2212|NULL|-0.9593550|-0.2461742	chr18	   926083	   926991	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37086_PI429285431	1.5236137	A	0.92394406	A	1.51536952518548	0	lncRNA	38213-1_{1..793}	n345530|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1079|NULL|-1.6400000|-0.3702493	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345530|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1079|NULL|-1.6400000|-0.3702493	chr2	 65500928	 65501720	+	NA	NA	NA	NA	ACTR2	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.89;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00chr2:65490928-65498387"	NA	inter
CUST_30079_PI429285431	4.371985	P	4.653851	P	0.822526462839019	0	lncRNA	31849-1_{1..424}	n334598|U79029|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221460_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221460_08|-1.1379800|-0.5704715	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334598|U79029|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221460_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221460_08|-1.1379800|-0.5704715	chr6	  2891504	  2891927	-	NA	NA	NA	NA	SERPINB9	NA	chr6:2887504-2902950	inner
CUST_49585_PI429285431	3.1789489	A	4.224409	P	0.484490371602172	0	lncRNA	53374-1_{1..315}	hg19_lincRNAsTranscripts_TCONS_l2_00024457 range=chr6:143271239-143277580 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024457 range=chr6:143271239-143277580 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	143271239	143271553	+	NA	NA	NA	NA	HIVEP2	NA	chr6:143261239-143266338	inter
CUST_39173_PI429285431	7.2491727	P	7.2325993	P	1.01155404372069	0	lncRNA	40150-1_{1..3000}	n385914|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009viv.2||7.4110200|-0.1306357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385914|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009viv.2||7.4110200|-0.1306357	chr1	    14406	    17405	-	NA	NA	NA	NA	LOC100652771	NA	chr1:12190-13639	inter
CUST_29563_PI429285431	0.8939885	A	0.9082079	A	0.990192275515141	0	lncRNA	31323-1_{1..249}	n333060|AF248649|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000074985|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000074985|2.3320600|-0.2091094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333060|AF248649|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000074985|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000074985|2.3320600|-0.2091094	chr19	  3290227	  3290475	+	NA	NA	NA	NA	CELF5	NA	chr19:3280227-3297074	inter
LNCA_21_P0006781	2.2340584	A	1.4710051	A	1.6970785003856	0	lncRNA	XR_110437	XR_110437	XR_110437	NA	NA	LOC100507633	uncharacterized LOC100507633	ENST00000432246	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507633 (LOC100507633), miscRNA [XR_110437]"	chr10:93542862-93542803	hs|10q23.32	Agilent_HUMAN_G3V2	XR_110437	XR_110437	chr10	 93542803	 93542862	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00802420	2.2100885	A	1.9507756	A	1.19690852748882	0	lncRNA	TCONS_00004391	NA	NA	NA	NA	XLOC_002275	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002275), lincRNA [TCONS_00004391]"	chr2:113399653-113399594	hs|2q13	Agilent_HUMAN_G3V2	TCONS_00004391	TCONS_00004391	chr2	113399594	113399653	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34929_PI429285431	0.90810996	A	0.91791296	A	0.993228111470869	0	lncRNA	36349-1_{1..373}	n341848|AF085937|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4328|NULL|-0.9704540|-0.3888393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341848|AF085937|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4328|NULL|-0.9704540|-0.3888393	chr12	 19418911	 19419283	-	NA	NA	NA	NA	PLEKHA5	NA	chr12:19408911-19429273	inner
CUST_32775_PI429285431	1.4886572	A	1.0283787	A	1.37580738041302	0	lncRNA	34409-1_{1..1502}	n339413|BC042024|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1845|NULL|-1.0812700|-0.4503832	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n339413|BC042024|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1845|NULL|-1.0812700|-0.4503832	chr3	107149776	107151277	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47243_PI429285431	0.91133463	A	1.4801201	A	0.674184110175249	0	lncRNA	51317-1_{1..1223}	"gi|197245374|ref|NR_001279.2| Homo sapiens cystatin 13, pseudogene (CST13P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|197245374|ref|NR_001279.2| Homo sapiens cystatin 13, pseudogene (CST13P), non-coding RNA"	Chr20	 23499783	 23501005	+	164380	NR_001279.2	NA	NA	NA	NA	NA	inter
CUST_13885_PI429285431	0.9035277	A	0.913213	A	0.993309145725655	0	lncRNA	15528-1_{1..515}	lnc-CCDC37-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC37-4:1	chr3	125934201	125934715	+	lnc-CCDC37-4	lnc-CCDC37-4:1	XLOC_002795	linc-CCDC37-5	NA	NA	NA	inter
CUST_22478_PI429285431	0.8912463	A	0.90081936	A	0.993386427030662	0	lncRNA	24065-1_{1..513}	lnc-AWAT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AWAT2-1:1	chrX	 69369379	 69369891	-	lnc-AWAT2-1	lnc-AWAT2-1:1	ENSG00000220925.2	IGBP1-AS2	IGBP1	"hg19_refFlat_IGBP1:range=chrX:69353798-693858315'pad=0,hg19_refFlat_IGBP1:range=chrX:69353798-693858315'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30chrX:69359379-69379504"	NA	inner
CUST_11345_PI429285431	5.077902	P	5.3304768	P	0.839396992923847	0	lncRNA	12907-1_{1..224}	lnc-ENPP1-4:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENPP1-4:12	chr6	132490141	132490364	+	lnc-ENPP1-4	lnc-ENPP1-4:12	XLOC_005465	linc-TAAR9-1	NA	NA	NA	inter
CUST_19917_PI429285431	0.8898967	A	0.8915934	A	0.998824628469597	0	lncRNA	21572-1_{1..2359}	lnc-CD53-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CD53-1:1	chr1	111494806	111497164	+	lnc-CD53-1	lnc-CD53-1:1	ENSG00000232811.1	RP11-96K19.2	LRIF1	"hg19_refFlat_LRIF1:range=chr1:111490581-1115063105'pad=0,hg19_refFlat_LRIF1:range=chr1:111490581-1115063105'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50chr1:111489812-111505470"	NA	inner
CUST_21688_PI429285431	5.103723	P	5.1398516	P	0.975268523457851	0	lncRNA	23298-1_{1..738}	lnc-C9orf163-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C9orf163-2:1	chr9	139443584	139444321	+	lnc-C9orf163-2	lnc-C9orf163-2:1	ENSG00000237886.1	RP11-611D20.2	NOTCH1	NA	chr9:139433584-139440238	inter
CUST_31153_PI429285431	2.5494194	A	2.1295648	A	1.33779272042519	0	lncRNA	32948-1_{1..213}	n337482|EF139846|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394905|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394905|-0.0138366|-0.2421080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337482|EF139846|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394905|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394905|-0.0138366|-0.2421080	chr4	114421621	114421833	-	NA	NA	NA	NA	CAMK2D	NA	chr4:114411621-114444514	inner
LNCA_21_P0010088	14.709244	P	14.6599455	P	1.03476165614582	0	lncRNA	XR_109613	XR_109613	XR_109613	NA	Hs.729907	LOC100130157	uncharacterized LOC100130157	NA	THC2484797	NA	"PREDICTED: Homo sapiens hypothetical LOC100130157 (LOC100130157), miscRNA [XR_109613]"	chr20:44077004-44077063	hs|20q13.12	Agilent_HUMAN_G3V2	XR_109613	XR_109613	chr20	 44077004	 44077063	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39848_PI429285431	6.255993	P	6.060869	P	1.14482255415533	0	lncRNA	40749-1_{1..3000}	n406467|NR_023361|lncRNA|Homosapiens||RefGeneNoncode|NR_023361||1.6067100|-0.2367649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406467|NR_023361|lncRNA|Homosapiens||RefGeneNoncode|NR_023361||1.6067100|-0.2367649	chr15	 90373830	 90376829	-	NA	NA	NA	NA	C15orf38-AP3S2	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr15:90373831-90447617"	NA	inner
CUST_17242_PI429285431	4.9062033	P	6.110034	P	0.434121054838134	0	lncRNA	18960-1_{1..252}	lnc-IFRD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IFRD2-1:1	chr3	 50304901	 50305152	-	lnc-IFRD2-1	lnc-IFRD2-1:1	XLOC_003123	linc-MON1A-2	GNAI2	NA	chr3:50294901-50296786	inter
CUST_1373_PI429285431	1.4618427	A	0.8976839	A	1.47852516620281	0	lncRNA	1361-1_{1..2467}	"transcript_id ""ENST00000604491.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604491.1"" | genecode_v17"	chr3	 71634094	 71636560	+	ENSG00000270562.1	ENST00000604491.1	RP11-154H23.3	RP11-154H23.3-001	FOXP1	NA	chr3:71624094-71633140	inter
CUST_29732_PI429285431	6.0721884	P	6.0371723	P	1.02456825681224	0	lncRNA	31494-1_{1..665}	n333405|BC009619|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087336|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087336|-1.4030100|-0.1106895	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333405|BC009619|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087336|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087336|-1.4030100|-0.1106895	chr1	  8716318	  8716982	-	NA	NA	NA	NA	RERE	NA	chr1:8706318-8877699	inner
CUST_38328_PI429285431	0.9516274	A	1.5832212	A	0.645462953859851	0	lncRNA	39374-1_{1..1233}	n382044|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vei.1||0.3888140|-0.2266937	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382044|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vei.1||0.3888140|-0.2266937	chr13	 50656413	 50657645	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40875_PI429285431	11.078844	P	10.841139	P	1.17911546394427	0	lncRNA	41569-2_{3001..4304}	n410676|NR_037926|lncRNA|Homosapiens||RefGeneNoncode|NR_037926||8.6940700|-0.1989238	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410676|NR_037926|lncRNA|Homosapiens||RefGeneNoncode|NR_037926||8.6940700|-0.1989238	chr17	  7468308	  7469611	+	NA	NA	NA	NA	SENP3	NA	chr17:7465309-7475287	inner
CUST_10254_PI429285431	2.9323554	P	2.4798455	A	1.36841886658811	0	lncRNA	11781-1_{1..1058}	lnc-CMPK2-13:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMPK2-13:8	chr2	  5831107	  5832164	-	lnc-CMPK2-13	lnc-CMPK2-13:8	XLOC_001958	linc-RNASEH1-2	SOX11	NA	chr2:5832799-5841250	inter
CUST_11798_PI429285431	1.3022867	A	0.8813674	A	1.33878036755666	0	lncRNA	13379-1_{1..3000}	lnc-C5orf38-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf38-1:5	chr5	  2935206	  2938205	+	lnc-C5orf38-1	lnc-C5orf38-1:5	XLOC_004256	linc-IRX1-8	NA	NA	NA	inter
CUST_7798_PI429285431	3.8765192	P	3.3423438	P	1.44811422053066	0	lncRNA	9422-1_{1..1445}	lnc-TMPRSS11E-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMPRSS11E-1:1	chr4	 68587195	 68588639	+	lnc-TMPRSS11E-1	lnc-TMPRSS11E-1:1	ENSG00000248049	RP11-453E17.1	GNRHR	NA	chr4:68590944-68598223	inter
CUST_13313_PI429285431	2.6844366	A	1.3461012	A	2.52859398006271	0	lncRNA	14947-2_{3001..4997}	lnc-PLA2R1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLA2R1-1:1	chr2	160791687	160793683	-	lnc-PLA2R1-1	lnc-PLA2R1-1:1	XLOC_002368	linc-LY75	PLA2R1	NA	chr2:160797260-160802478	inter
CUST_26691_PI429285431	2.8021283	A	2.939379	A	0.909250235841441	0	lncRNA	28200-1_{1..1220}	n766|AF071170|Hoxa11-ASRNA|Homosapiens|Hoxa11-AS|NONCODEv2.0|n766|NULL|-1.5906100|-0.1336442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n766|AF071170|Hoxa11-ASRNA|Homosapiens|Hoxa11-AS|NONCODEv2.0|n766|NULL|-1.5906100|-0.1336442	chr7	 27227692	 27228911	+	NA	NA	NA	NA	HOXA10	NA	chr7:27217692-27219880	inter
CUST_42481_PI429285431	4.8583293	P	5.179807	P	0.800249790946133	0	lncRNA	45240-1_{1..132}	ENST00000384675 ncrna:snoRNA chromosome:GRCh37:2:207026952:207027083:1 gene:ENSG00000207406 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384675 ncrna:snoRNA chromosome:GRCh37:2:207026952:207027083:1 gene:ENSG00000207406 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	207026952	207027083	+	ENSG00000207406	ENST00000384675	NA	NA	NDUFS1	NA	chr2:207016952-207024243	inter
CUST_21728_PI429285431	5.2095623	P	5.2232814	P	0.990535715457702	0	lncRNA	23338-1_{1..207}	lnc-CMTM5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CMTM5-1:1	chr14	 23884815	 23885021	+	lnc-CMTM5-1	lnc-CMTM5-1:1	ENSG00000258444.1	CTD-2201G16.1	MYH6	NA	chr14:23874815-23877486	inner
CUST_45457_PI429285431	1.4454477	A	0.88028085	A	1.47955861268577	0	lncRNA	49873-1_{1..1843}	"gi|310124542|ref|XR_109859.1| PREDICTED: Homo sapiens uncharacterized LOC100129999 (LOC100129999), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124542|ref|XR_109859.1| PREDICTED: Homo sapiens uncharacterized LOC100129999 (LOC100129999), misc_RNA"	NA	NA	NA	NA	NA	XR_109859.1	NA	NA	NA	NA	NA	Unknown
CUST_30033_PI429285431	9.972492	P	10.378804	P	0.754549786228398	0	lncRNA	31802-1_{1..309}	n334509|U32473|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219227|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219227|0.5843000|-0.1249290	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334509|U32473|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219227|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219227|0.5843000|-0.1249290	chr10	 75577290	 75577598	-	NA	NA	NA	NA	CAMK2G	NA	chr10:75572259-75595119	inner
CUST_6486_PI429285431	3.4979572	P	4.1014657	P	0.658151444569596	0	lncRNA	6428-1_{1..600}	"transcript_id ""ENST00000587412.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587412.1"" | genecode_v17"	chr19	 36451414	 36452013	+	ENSG00000267388.1	ENST00000587412.1	AF038458.5	AF038458.5-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90"	NA	inter
CUST_22401_PI429285431	0.88923687	A	0.8820881	A	1.00496744682746	0	lncRNA	23991-1_{1..1342}	lnc-ATPBD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATPBD4-1:1	chr15	 35461826	 35463167	-	lnc-ATPBD4-1	lnc-ATPBD4-1:1	ENSG00000259336.1	RP11-323I15.5	NA	NA	NA	inter
CUST_27112_PI429285431	0.88717484	A	0.8893631	A	0.998484363489555	0	lncRNA	28645-1_{1..2432}	n324224|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326621|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326621|-0.1186990|-0.3965532	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324224|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326621|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326621|-0.1186990|-0.3965532	chr7	 22569480	 22571911	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44154_PI429285431	2.2781649	A	2.0626276	A	1.16113627350439	0	lncRNA	48815-1_{1..806}	"gi|397139022|ref|XR_110051.2| PREDICTED: Homo sapiens uncharacterized LOC100506319, transcript variant 1 (LOC100506319), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139022|ref|XR_110051.2| PREDICTED: Homo sapiens uncharacterized LOC100506319, transcript variant 1 (LOC100506319), misc_RNA"	Chr3	 44469194	 44469999	+	100506319	XR_110051.3	NA	NA	NA	NA	NA	inter
CUST_32061_PI429285431	0.92336375	A	0.906406	A	1.0118235688659	0	lncRNA	33774-2_{3001..6000}	n338623|BX648491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1032|NULL|-0.9419510|-0.2251874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338623|BX648491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1032|NULL|-0.9419510|-0.2251874	chr13	 30729022	 30732021	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43031_PI429285431	1.5298821	A	1.6203057	A	0.939246929720729	0	lncRNA	46535-1_{1..155}	ENST00000516954 ncrna:snRNA chromosome:GRCh37:3:159526205:159526359:-1 gene:ENSG00000252763 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516954 ncrna:snRNA chromosome:GRCh37:3:159526205:159526359:-1 gene:ENSG00000252763 gene_biotype:snRNA transcript_biotype:snRNA	chr3	159526205	159526359	-	ENSG00000252763	ENST00000516954	NA	NA	SCHIP1	NA	chr3:159516205-159536359	inner
CUST_31697_PI429285431	2.4192817	A	2.2215092	A	1.14692615005273	0	lncRNA	33441-1_{1..839}	n338225|BC043574|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|617|NULL|-0.1276450|-0.2501018	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338225|BC043574|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|617|NULL|-0.1276450|-0.2501018	chr14	 24608653	 24609491	+	NA	NA	NA	NA	RNF31	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60chr14:24616659-24619653"	NA	inner
CUST_31507_PI429285431	7.330765	P	7.0924015	P	1.17965377920689	0	lncRNA	33268-1_{1..2996}	n337991|BC037323|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|377|NULL|-1.3076000|-0.3949777	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337991|BC037323|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|377|NULL|-1.3076000|-0.3949777	chr1	 70607064	 70610059	+	NA	NA	NA	NA	LRRC40	NA	chr1:70610485-70620043	inter
CUST_24224_PI429285431	2.4667895	A	2.3656137	A	1.07264731658759	0	lncRNA	25775-1_{1..1760}	lnc-AC027045.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC027045.1-1:1	chr17	  9726018	  9727777	-	lnc-AC027045.1-1	lnc-AC027045.1-1:1	ENSG00000262144.1	RP11-655D3.2	GLP2R	"hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.71;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20chr17:9729381-9737777"	NA	inter
CUST_46174_PI429285431	3.6043224	P	3.9890058	P	0.765947067493441	0	lncRNA	50421-1_{1..740}	"gi|380714676|ref|NR_046461.1| Homo sapiens mitochondrial intermediate peptidase pseudogene 3 (MIPEPP3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|380714676|ref|NR_046461.1| Homo sapiens mitochondrial intermediate peptidase pseudogene 3 (MIPEPP3), transcript variant 2, non-coding RNA"	Chr13	 21872264	 21873003	+	650794	NR_046461.1	NA	NA	NA	"hg19_refFlat_ZDHHC20:range=chr13:21950787-220333105'pad=0,hg19_refFlat_ZDHHC20:range=chr13:21950787-220333105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00"	NA	inter
CUST_16096_PI429285431	2.7808042	A	3.5362375	P	0.592368446412901	0	lncRNA	17801-1_{1..381}	lnc-ZSWIM2-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZSWIM2-7:2	chr2	186031776	186032156	-	lnc-ZSWIM2-7	lnc-ZSWIM2-7:2	XLOC_002424	linc-NCKAP1-2	NA	NA	NA	inter
LNCA_21_P0009354	1.2056557	A	0.8884525	A	1.24591288693601	0	lncRNA	TCONS_00025745	NA	NA	NA	NA	XLOC_012562	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012562), lincRNA [TCONS_00025745]"	chr17:68884730-68884337	hs|17q24.3	Agilent_HUMAN_G3V2	TCONS_00025745	TCONS_00025745	chr17	 68884337	 68884730	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34545_PI429285431	5.2585344	P	5.8559794	P	0.660923408974478	0	lncRNA	36006-1_{1..477}	n341427|AF339825|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3897|NULL|-0.7775470|-0.1502182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341427|AF339825|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3897|NULL|-0.7775470|-0.1502182	chr13	103241721	103242197	-	NA	NA	NA	NA	TPP2	NA	chr13:103249286-103252163	inter
CUST_21692_PI429285431	5.0431194	P	5.0378346	P	1.00366986173251	0	lncRNA	23303-1_{1..456}	lnc-TSC2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSC2-2:1	chr16	  2163048	  2163503	+	lnc-TSC2-2	lnc-TSC2-2:1	ENSG00000261240.1	RP11-304L19.4	PKD1	"hg19_refFlat_PKD1:range=chr16:2139728-21856905'pad=0,hg19_refFlat_PKD1:range=chr16:2139728-21856905'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50chr16:2153048-2173343"	NA	inner
CUST_13738_PI429285431	3.4215155	P	3.3695526	P	1.03667444180538	0	lncRNA	15381-1_{1..310}	lnc-KCNS3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNS3-3:1	chr2	 19125111	 19125420	+	lnc-KCNS3-3	lnc-KCNS3-3:1	XLOC_001374	linc-RHOB-7	NA	NA	NA	inter
CUST_37113_PI429285431	0.9050377	A	0.9120138	A	0.995176207989153	0	lncRNA	38238-1_{1..1931}	n345556|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1105|NULL|-1.3618500|-0.2979318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345556|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1105|NULL|-1.3618500|-0.2979318	chr2	181930926	181932856	-	NA	NA	NA	NA	UBE2E3	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50chr2:181920926-181928150"	NA	inter
CUST_5300_PI429285431	0.88518345	A	0.88854617	A	0.997671854457565	0	lncRNA	5240-1_{1..836}	"transcript_id ""ENST00000559227.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559227.1"" | genecode_v17"	chr15	 90057819	 90058654	-	ENSG00000259218.1	ENST00000559227.1	RP11-429B14.2	RP11-429B14.2-002	NA	NA	NA	inter
LNCA_21_P0002373	0.8933357	A	0.89278376	A	1.00038264884624	0	lncRNA	TCONS_00004059	NA	NA	NA	NA	XLOC_001907	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001907), lincRNA [TCONS_00004059]"	chr2:238060812-238060871	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_00004059	TCONS_00004059	chr2	238060812	238060871	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23853_PI429285431	2.1422534	A	2.4853182	A	0.788364763118756	0	lncRNA	25416-1_{1..773}	lnc-GTF2IRD2B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTF2IRD2B-2:1	chr7	 74863859	 74864631	+	lnc-GTF2IRD2B-2	lnc-GTF2IRD2B-2:1	ENSG00000224804.4	AC004878.2	GATSL2	NA	chr7:74853859-74867341	inner
LNCA_21_P0005294	2.460813	A	1.6551644	A	1.7479314419505	0	lncRNA	ENST00000440074	NA	NA	NA	NA	XLOC_006405	NA	ENST00000440074	NA	NA	"BROAD Institute lincRNA (XLOC_006405), lincRNA [TCONS_00013154]"	chr7:33908175-33908116	hs|7p14.3	Agilent_HUMAN_G3V2	ENST00000440074	ENST00000440074	chr7	 33908116	 33908175	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003642	2.1083324	A	3.4541469	P	0.39343180641505	0	lncRNA	TCONS_00008209	NA	NA	NA	NA	XLOC_003665	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003665), lincRNA [TCONS_00008209]"	chr4:119772311-119772370	hs|4q26	Agilent_HUMAN_G3V2	TCONS_00008209	TCONS_00008209	chr4	119772311	119772370	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2678_PI429285431	2.5451174	A	1.9861925	A	1.47317099738379	0	lncRNA	2664-1_{1..718}	"transcript_id ""ENST00000603191.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603191.1"" | genecode_v17"	chr6	157097494	157098211	-	ENSG00000271551.1	ENST00000603191.1	RP11-230C9.2	RP11-230C9.2-001	ARID1B	NA	chr6:157099064-157108211	inter
CUST_37243_PI429285431	3.4063735	P	3.637272	P	0.852104042267782	0	lncRNA	38350-1_{1..395}	n345674|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1223|NULL|-1.3102300|-0.5484027	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345674|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1223|NULL|-1.3102300|-0.5484027	chr2	 96523087	 96523481	-	NA	NA	NA	NA	LOC400986	NA	chr2:96516920-96543219	inter
CUST_29428_PI429285431	0.89485615	A	0.88994104	A	1.0034127047004	0	lncRNA	31184-1_{1..341}	n332810|AF056444|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064719|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064719|-0.9891240|-0.4642603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332810|AF056444|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064719|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064719|-0.9891240|-0.4642603	chr5	  8458955	  8459295	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51615_PI429285431	4.126074	P	4.5334916	P	0.753971763397386	0	lncRNA	55184-1_{1..308}	hg19_lincRNAsTranscripts_TCONS_l2_00011220 range=chr17:40180921-40183773 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011220 range=chr17:40180921-40183773 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 40180921	 40181228	-	NA	NA	NA	NA	ZNF385C	NA	chr17:40177594-40190044	inner
CUST_40971_PI429285431	3.965269	P	4.6515193	P	0.621467003842407	0	lncRNA	41642-1_{1..1913}	n411041|NR_038865|lncRNA|Homosapiens||RefGeneNoncode|NR_038865||5.8427900|-0.1058012	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411041|NR_038865|lncRNA|Homosapiens||RefGeneNoncode|NR_038865||5.8427900|-0.1058012	chr19	  3607244	  3609156	+	NA	NA	NA	NA	TBXA2R	"hg19_refFlat_CACTIN:range=chr19:3611921-36267605'pad=0,hg19_refFlat_CACTIN:range=chr19:3611921-36267605'pad=0 3'pad=0 strand=- repeatMasking=none,-112.40chr19:3597244-3606831"	NA	inner
CUST_15656_PI429285431	1.0665276	A	0.9243201	A	1.10359245616766	0	lncRNA	17349-1_{1..1947}	lnc-FAM174B-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM174B-1:4	chr15	 93139286	 93141232	-	lnc-FAM174B-1	lnc-FAM174B-1:4	XLOC_011585	linc-VPS33B-2	NA	NA	NA	inter
LNCA_21_P0008219	11.615905	P	11.203019	P	1.33134640771281	0	lncRNA	TCONS_00022120	NA	NA	NA	NA	XLOC_010730	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010730), lincRNA [TCONS_00022120]"	chr13:112836897-112836838	hs|13q34	Agilent_HUMAN_G3V2	TCONS_00022120	TCONS_00022120	chr13	112836838	112836897	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43789_PI429285431	3.42752	P	2.3934817	A	2.04774816280544	0	lncRNA	48520-1_{1..2348}	"gi|300244493|ref|NR_033997.1| Homo sapiens RNF144A antisense RNA 1 (RNF144A-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300244493|ref|NR_033997.1| Homo sapiens RNF144A antisense RNA 1 (RNF144A-AS1), non-coding RNA"	Chr2	  7052407	  7054754	-	386597	NR_033997.1	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60"	NA	inter
CUST_29605_PI429285431	1.1922383	A	0.9008567	A	1.22381170259541	0	lncRNA	31366-1_{1..200}	n333130|AF345625|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078111|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078111|-1.2270900|-0.2584404	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333130|AF345625|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078111|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078111|-1.2270900|-0.2584404	chr7	 87230325	 87230524	-	NA	NA	NA	NA	ABCB1	NA	chr7:87220325-87342639	inner
CUST_355_PI429201921	8.475882	P	8.360465	P	1.08328811644759	0	lncRNA	229-1_{1..3000}	TC06003194.hg.1	 TCONS_l2_00024518-XLOC_l2_012802 // Broad TUCP // linc-FGFR1OP-4 chr6:+:166723013-166731019 // chr6 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00024517-XLOC_l2_012802 // Broad TUCP // linc-FGFR1OP-4 chr6:+:166722952-166731019 // chr6 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00024519-XLOC_l2_012802 // Broad TUCP // linc-FGFR1OP-4 chr6:+:166723264-166731401 // chr6 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6:+:166722952-166731019	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00024517-XLOC_l2_012802	linc-FGFR1OP-4	chr6	166722952	166731019	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13115_PI429285431	0.8912797	A	1.1245359	A	0.850712642875928	0	lncRNA	14740-1_{1..317}	lnc-CDH18-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH18-4:1	chr5	 21172632	 21172948	-	lnc-CDH18-4	lnc-CDH18-4:1	XLOC_004751	linc-CDH18-3	NA	NA	NA	inter
CUST_36444_PI429285431	4.059269	P	4.4211783	P	0.778134095101574	0	lncRNA	37658-1_{1..2568}	n344958|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_507|NULL|-1.2495000|-0.2762525	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344958|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_507|NULL|-1.2495000|-0.2762525	chr7	 77286977	 77289544	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70"	NA	inter
LNCA_21_P0010163	1.1169986	A	0.9265238	A	1.1411392101582	0	lncRNA	ENST00000445464	NA	NA	NA	NA	XLOC_013930	NA	ENST00000445464	NA	NA	"BROAD Institute lincRNA (XLOC_013930), lincRNA [TCONS_00028842]"	chr21:37462632-37462691	hs|21q22.12	Agilent_HUMAN_G3V2	ENST00000445464	ENST00000445464	chr21	 37462632	 37462691	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13158_PI429285431	1.5448414	A	1.364047	A	1.13350786385988	0	lncRNA	14785-1_{1..474}	lnc-CD46-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD46-3:1	chr1	208439873	208440346	+	lnc-CD46-3	lnc-CD46-3:1	XLOC_000544	linc-LOC642587-5	NA	NA	NA	inter
CUST_12017_PI429285431	0.9258573	A	0.98880327	A	0.957307309393184	0	lncRNA	13599-1_{1..329}	lnc-RCBTB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RCBTB2-1:1	chr13	 49144444	 49144772	-	lnc-RCBTB2-1	lnc-RCBTB2-1:1	XLOC_010605	linc-RCBTB2-3	NA	NA	NA	inter
CUST_48604_PI429285431	5.8598094	P	6.308483	P	0.732716190639452	0	lncRNA	52451-1_{1..313}	hg19_lincRNAsTranscripts_TCONS_l2_00014564 range=chr2:47958514-47959167 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014564 range=chr2:47958514-47959167 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 47958514	 47958826	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23819_PI429285431	1.663382	A	1.2869515	A	1.29812606978984	0	lncRNA	25382-1_{1..493}	lnc-TBC1D8-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBC1D8-2:3	chr2	101591995	101592487	-	lnc-TBC1D8-2	lnc-TBC1D8-2:3	ENSG00000230140.1	AC016738.3	NPAS2	NA	chr2:101581995-101602162	inner
CUST_22365_PI429285431	1.103291	A	0.9078849	A	1.14504643100399	0	lncRNA	23959-1_{1..550}	lnc-PREX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PREX2-1:1	chr8	 68647430	 68647979	+	lnc-PREX2-1	lnc-PREX2-1:1	ENSG00000255130.1	RP11-396J6.1	CPA6	NA	chr8:68637430-68657900	inner
CUST_1058_PI429285431	0.8981931	A	0.9117259	A	0.990663634882111	0	lncRNA	1048-1_{1..801}	"transcript_id ""ENST00000435441.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435441.1"" | genecode_v17"	chr2	123822897	123823697	+	ENSG00000237856.1	ENST00000435441.1	AC062020.2	AC062020.2-001	NA	NA	NA	inter
CUST_41628_PI429285431	3.1577644	A	2.721828	A	1.35278859318603	0	lncRNA	43015-1_{1..67}	ENST00000384869 ncrna:miRNA chromosome:GRCh37:11:61559967:61560033:-1 gene:ENSG00000207601 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384869 ncrna:miRNA chromosome:GRCh37:11:61559967:61560033:-1 gene:ENSG00000207601 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 61559967	 61560033	-	ENSG00000207601	ENST00000384869	NA	NA	FADS1	NA	chr11:61567097-61570033	inter
CUST_16333_PI429285431	5.0071373	P	5.3735723	P	0.775696931629174	0	lncRNA	18034-1_{1..400}	lnc-TCERG1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCERG1L-1:1	chr10	132608961	132609360	-	lnc-TCERG1L-1	lnc-TCERG1L-1:1	XLOC_008997	linc-EBF3-4	NA	NA	NA	inter
CUST_1653_PI429285431	1.5794449	A	2.1723065	A	0.663026482269811	0	lncRNA	1638-1_{1..728}	"transcript_id ""ENST00000600288.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600288.1"" | genecode_v17"	chr3	195435025	195435752	+	ENSG00000242086.3	ENST00000600288.1	AC069513.3	AC069513.3-025	MUC20	NA	chr3:195447753-195461901	inner
CUST_28820_PI429285431	0.8872759	A	1.2630968	A	0.770666775043584	0	lncRNA	30529-1_{1..390}	n326234|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098810|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098810|-0.9658530|-0.3695849	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326234|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098810|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098810|-0.9658530|-0.3695849	chr1	217152721	217153110	-	NA	NA	NA	NA	ESRRG	NA	chr1:217142721-217166149	inner
CUST_12299_PI429285431	1.7807448	A	1.5537946	A	1.17035824149765	0	lncRNA	13910-1_{1..1917}	lnc-ERP44-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERP44-3:6	chr9	102535794	102537710	-	lnc-ERP44-3	lnc-ERP44-3:6	XLOC_007808	linc-ALG2-5	NA	NA	NA	inter
CUST_36491_PI429285431	3.22146	P	2.7095897	A	1.42589752171871	0	lncRNA	37693-1_{1..1697}	n344993|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_542|NULL|-1.3153400|-0.2003669	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344993|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_542|NULL|-1.3153400|-0.2003669	chr8	 26301403	 26303099	+	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00"	NA	inter
CUST_33870_PI429285431	0.8874914	A	1.0569485	A	0.889177224146148	0	lncRNA	35414-1_{1..1099}	n340658|AJ406936|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3120|NULL|3.1647900|-0.1845017	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340658|AJ406936|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3120|NULL|3.1647900|-0.1845017	chr17	 39315904	 39317002	-	NA	NA	NA	NA	KRTAP4-5	NA	chr17:39305904-39306054	inner
CUST_37035_PI429285431	4.164452	P	4.2950144	P	0.913475284419778	0	lncRNA	38173-1_{1..838}	n345490|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1039|NULL|-1.3957500|-0.1645615	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345490|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1039|NULL|-1.3957500|-0.1645615	chr1	234912781	234913618	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31922_PI429285431	0.91387177	A	1.7053341	A	0.577758173642333	0	lncRNA	33650-1_{1..395}	n338476|AJ227906|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|873|NULL|-1.0060700|-0.2550910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n338476|AJ227906|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|873|NULL|-1.0060700|-0.2550910	chr19	 19614691	 19615085	+	NA	NA	NA	NA	GATAD2A	NA	chr19:19604691-19619741	inner
CUST_30452_PI429285431	11.065056	P	11.464093	P	0.758364323088397	0	lncRNA	32232-1_{1..599}	n335593|CR595160|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000274355|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000274355|0.0586213|-0.2464264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335593|CR595160|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000274355|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000274355|0.0586213|-0.2464264	chr14	 20944647	 20945245	+	NA	NA	NA	NA	PNP	NA	chr14:20937538-20946165	inner
CUST_31633_PI429285431	0.89947337	A	0.91059643	A	0.992319727500882	0	lncRNA	33385-1_{1..1412}	n338153|BC043294|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|542|NULL|-1.1518000|-0.3108830	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338153|BC043294|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|542|NULL|-1.1518000|-0.3108830	chr15	 98096513	 98097924	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009261	1.6255927	A	0.89362335	A	1.66090476194993	0	lncRNA	TCONS_00025440	NA	NA	NA	NA	XLOC_012258	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012258), lincRNA [TCONS_00025440]"	chr17:55282364-55282423	hs|17q22	Agilent_HUMAN_G3V2	TCONS_00025440	TCONS_00025440	chr17	 55282364	 55282423	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49679_PI429285431	13.853301	P	13.48256	P	1.29301678205709	0	lncRNA	53457-1_{1..584}	hg19_lincRNAsTranscripts_TCONS_l2_00025570 range=chr7:331195-334385 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025570 range=chr7:331195-334385 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	   331195	   331778	+	NA	NA	NA	NA	LOC100288524	NA	chr7:330136-331454	inner
CUST_8351_PI429285431	0.88096315	A	1.0912144	A	0.864386682467006	0	lncRNA	9930-1_{1..586}	lnc-ANXA3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANXA3-1:2	chr4	 79601915	 79602500	+	lnc-ANXA3-1	lnc-ANXA3-1:2	ENSG00000251442	RP11-792D21.2	NA	NA	NA	inter
CUST_15344_PI429285431	2.691811	A	3.340126	A	0.638025061944165	0	lncRNA	17025-1_{1..395}	lnc-C1orf174-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf174-2:1	chr1	  4616309	  4616703	-	lnc-C1orf174-2	lnc-C1orf174-2:1	XLOC_000685	linc-C1orf174-3	NA	NA	NA	inter
CUST_21310_PI429285431	7.7268133	P	7.8923445	P	0.891600171985839	0	lncRNA	22933-1_{1..552}	lnc-SUPT6H-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SUPT6H-1:1	chr17	 26961601	 26962152	+	lnc-SUPT6H-1	lnc-SUPT6H-1:1	ENSG00000264044.1	RP11-192H23.7	KIAA0100	"hg19_refFlat_KIAA0100:range=chr17:26942082-269720745'pad=0,hg19_refFlat_KIAA0100:range=chr17:26942082-269720745'pad=0 3'pad=0 strand=- repeatMasking=none,-95.90chr17:26951601-26971758"	NA	inner
CUST_35281_PI429285431	3.1231892	P	3.2314377	P	0.92771366674335	0	lncRNA	36684-1_{1..1420}	n342298|AK026285|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4790|NULL|-1.2057400|-0.2815717	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342298|AK026285|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4790|NULL|-1.2057400|-0.2815717	chr14	 21463995	 21465414	-	NA	NA	NA	NA	METTL17	"hg19_refFlat_METTL17:range=chr14:21458162-214650425'pad=0,hg19_refFlat_METTL17:range=chr14:21458162-214650425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_METTL17:range=chr14:21458162-214650495'pad=0,hg19_refFlat_METTL17:range=chr14:21458162-214650495'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40chr14:21453995-21465194"	NA	inner
LNCA_21_P0003287	0.88663006	A	0.8897581	A	0.997834156723948	0	lncRNA	XR_109997	XR_109997	XR_109997	NA	NA	LOC100506865	uncharacterized LOC100506865	NA	THC2645708	NA	"PREDICTED: Homo sapiens hypothetical LOC100506865 (LOC100506865), miscRNA [XR_109997]"	chr3:72712576-72712517	hs|3p13	Agilent_HUMAN_G3V2	XR_109997	XR_109997	chr3	 72712517	 72712576	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4898_PI429285431	0.89866644	A	0.8816553	A	1.01186101424307	0	lncRNA	4840-1_{1..632}	"transcript_id ""ENST00000554926.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554926.1"" | genecode_v17"	chr14	 76961706	 76962337	-	ENSG00000259124.1	ENST00000554926.1	RP11-187O7.3	RP11-187O7.3-001	VASH1	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50chr14:77156483-77203055"	NA	inner
LNCA_21_P0005742	1.733327	A	2.5279195	A	0.576505988830681	0	lncRNA	TCONS_00014808	NA	NA	NA	NA	XLOC_006883	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006883), lincRNA [TCONS_00014808]"	chr8:101504879-101505056	hs|8q22.2	Agilent_HUMAN_G3V2	TCONS_00014808	TCONS_00014808	chr8	101504879	101505056	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14330_PI429285431	3.3271165	P	3.253446	P	1.05239076963103	0	lncRNA	15988-1_{1..3000}	lnc-HMBOX1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HMBOX1-1:2	chr8	 28921693	 28924692	+	lnc-HMBOX1-1	lnc-HMBOX1-1:2	XLOC_006753	linc-LEPROTL1-6	KIF13B	NA	chr8:28924795-28932445	inter
CUST_7516_PI429285431	1.3747764	A	1.6232834	A	0.84176708310369	0	lncRNA	9156-1_{1..1806}	lnc-FBXL5-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FBXL5-3:2	chr4	 14994953	 14996758	-	lnc-FBXL5-3	lnc-FBXL5-3:2	ENSG00000247624	AC006296.3	CPEB2	NA	chr4:15004298-15006129	inter
LNCA_21_P0006469	4.1542225	P	4.602516	P	0.732909261321503	0	lncRNA	ENST00000456981	NA	NA	NA	NA	XLOC_008254	NA	ENST00000456981	NA	NA	"BROAD Institute lincRNA (XLOC_008254), lincRNA [TCONS_00017100]"	chrX:147579741-147579682	hs|Xq28	Agilent_HUMAN_G3V2	ENST00000456981	ENST00000456981	chrX	147579682	147579741	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1410_PI429285431	0.9035632	A	0.96107143	A	0.960922356766477	0	lncRNA	1399-1_{1..295}	"transcript_id ""ENST00000496943.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000496943.1"" | genecode_v17"	chr3	106991458	106991752	-	ENSG00000239828.2	ENST00000496943.1	RP11-446H18.5	RP11-446H18.5-001	CCDC54	NA	chr3:107046680-107051611	inter
CUST_20536_PI429285431	2.1766582	A	2.4582617	A	0.822676136078611	0	lncRNA	22177-2_{3001..4354}	lnc-PFKL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PFKL-1:1	chr21	 45756085	 45757438	+	lnc-PFKL-1	lnc-PFKL-1:1	ENSG00000184441.4	AP001062.7	PFKL	"hg19_refFlat_C21orf2:range=chr21:45750081-457590775'pad=0,hg19_refFlat_C21orf2:range=chr21:45750081-457590775'pad=0 3'pad=0 strand=- repeatMasking=none,-103.10;hg19_refFlat_C21orf2:range=chr21:45750081-457556695'pad=0,hg19_refFlat_C21orf2:range=chr21:45750081-457556695'pad=0 3'pad=0 strand=- repeatMasking=none,-103.10chr21:45743085-45747261"	NA	inner
LNCA_21_P0002448	3.855144	P	3.9449027	P	0.939679903562715	0	lncRNA	TCONS_00004274	NA	NA	NA	NA	XLOC_002116	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002116), lincRNA [TCONS_00004274]"	chr2:62686499-62683872	hs|2p15	Agilent_HUMAN_G3V2	TCONS_00004274	TCONS_00004274	chr2	 62683872	 62686499	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43153_PI429285431	1.9280461	A	0.8834865	A	2.06273658735107	0	lncRNA	47968-1_{1..466}	ENST00000604219 havana:sense_intronic chromosome:GRCh37:2:75897115:75897580:1 gene:ENSG00000271452 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000604219 havana:sense_intronic chromosome:GRCh37:2:75897115:75897580:1 gene:ENSG00000271452 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr2	 75897115	 75897580	+	ENSG00000271452	ENST00000604219	NA	NA	C2orf3	"hg19_refFlat_GCFC2:range=chr2:75891792-759379815'pad=0,hg19_refFlat_GCFC2:range=chr2:75891792-759379815'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_GCFC2:range=chr2:75891792-759294365'pad=0,hg19_refFlat_GCFC2:range=chr2:75891792-759294365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70chr2:75889831-75907580"	NA	inner
CUST_12142_PI429285431	2.6928985	A	2.7436907	A	0.965406068070995	0	lncRNA	13740-1_{1..1135}	lnc-MEIS2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MEIS2-4:2	chr15	 37660897	 37662031	-	lnc-MEIS2-4	lnc-MEIS2-4:2	XLOC_011428	linc-MEIS2-2	NA	NA	NA	inter
LNCA_21_P0012411	4.8079076	P	5.258838	P	0.731570902707929	0	lncRNA	TCONS_l2_00018977	NA	NA	NA	NA	XLOC_l2_009979	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009979), lincRNA [TCONS_l2_00018977]"	chr3:165209025-165213038	hs|3q26.1	Agilent_HUMAN_G3V2	TCONS_l2_00018977	TCONS_l2_00018977	chr3	165209025	165213038	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17435_PI429285431	0.8810219	A	0.8815003	A	0.999668453362558	0	lncRNA	19159-1_{1..328}	lnc-KCNJ2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNJ2-1:1	chr17	 68916548	 68916875	+	lnc-KCNJ2-1	lnc-KCNJ2-1:1	XLOC_012297	linc-SOX9-4	NA	NA	NA	inter
CUST_12621_PI429285431	0.88067937	A	1.9947579	A	0.461986138317695	0	lncRNA	14236-1_{1..1341}	lnc-RGS18-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGS18-5:2	chr1	190449475	190450815	+	lnc-RGS18-5	lnc-RGS18-5:2	XLOC_000505	linc-RGS18-3	FAM5C	NA	chr1:190439475-190446759	inter
CUST_45477_PI429285431	2.5061824	A	3.2501817	P	0.597081883243161	0	lncRNA	49892-1_{1..1886}	"gi|310120428|ref|XR_108998.1| PREDICTED: Homo sapiens uncharacterized LOC100288619 (LOC100288619), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120428|ref|XR_108998.1| PREDICTED: Homo sapiens uncharacterized LOC100288619 (LOC100288619), misc_RNA"	NA	NA	NA	NA	NA	XR_108998.1	NA	NA	NA	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.81;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20"	NA	Unknown
CUST_40371_PI429285431	3.5400844	P	2.7578378	A	1.7198069141223	0	lncRNA	41169-2_{3001..6000}	n409150|NR_033268|lncRNA|Homosapiens||RefGeneNoncode|NR_033268||2.7426600|-0.2811811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409150|NR_033268|lncRNA|Homosapiens||RefGeneNoncode|NR_033268||2.7426600|-0.2811811	chr3	131103624	131106623	+	NA	NA	NA	NA	NUDT16	NA	chr3:131100515-131107674	inter
LNCA_21_P0002947	2.6514404	A	2.2480903	A	1.32257551669868	0	lncRNA	TCONS_00006817	NA	NA	NA	NA	XLOC_002618	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002618), lincRNA [TCONS_00006817]"	chr3:39300587-39300646	hs|3p22.2	Agilent_HUMAN_G3V2	TCONS_00006817	TCONS_00006817	chr3	 39300587	 39300646	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6916_PI429285431	1.3436495	A	0.8973037	A	1.3625845938057	0	lncRNA	6868-1_{1..603}	"transcript_id ""ENST00000457060.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457060.1"" | genecode_v17"	chr22	 17150354	 17150956	-	ENSG00000189295.8	ENST00000457060.1	ANKRD62P1-PARP4P3	ANKRD62P1-PARP4P3-003	NA	NA	NA	inter
CUST_1577_PI429285431	0.9095381	A	0.895992	A	1.0094336601131	0	lncRNA	1566-1_{1..865}	"transcript_id ""ENST00000460993.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000460993.1"" | genecode_v17"	chr3	181138846	181139710	-	ENSG00000241231.1	ENST00000460993.1	RP11-275H4.1	RP11-275H4.1-001	NA	NA	NA	inter
CUST_39829_PI429285431	0.8907412	A	0.89018244	A	1.00038737793007	0	lncRNA	40736-1_{1..1501}	n406419|NR_015446|lncRNA|Homosapiens||RefGeneNoncode|NR_015446||1.7513100|-0.1728004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406419|NR_015446|lncRNA|Homosapiens||RefGeneNoncode|NR_015446||1.7513100|-0.1728004	chr4	 69048009	 69049509	+	NA	NA	NA	NA	TMPRSS11BNL	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_TMPRSS11B:range=chr4:69093629-691112765'pad=0,hg19_refFlat_TMPRSS11B:range=chr4:69093629-691112765'pad=0 3'pad=0 strand=- repeatMasking=none,-61.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TMPRSS11BNL:range=chr4:69056959-690836315'pad=0,hg19_refFlat_TMPRSS11BNL:range=chr4:69056959-690836315'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60chr4:69054242-69083798"	NA	inner
CUST_23204_PI429285431	0.90738374	A	1.1677632	A	0.834868302126647	0	lncRNA	24776-1_{1..427}	lnc-C10orf11-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf11-5:1	chr10	 78909599	 78910025	+	lnc-C10orf11-5	lnc-C10orf11-5:1	ENSG00000225497.1	RP11-180I22.2	KCNMA1	NA	chr10:78899599-78919858	inner
CUST_26774_PI429285431	0.9111854	A	0.9167189	A	0.996171816326014	0	lncRNA	28273-1_{1..361}	n323826|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057735|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057735|-1.1046600|-0.4047756	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323826|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057735|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057735|-1.1046600|-0.4047756	chrX	102767659	102768019	-	NA	NA	NA	NA	RAB40A	NA	chrX:102757659-102774417	inner
CUST_30828_PI429285431	0.9063511	A	0.9107063	A	0.996985757377998	0	lncRNA	32615-1_{1..360}	n336760|Z80842|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328149|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328149|2.4106200|-0.0901699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336760|Z80842|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328149|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328149|2.4106200|-0.0901699	chr14	106330797	106331156	-	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106859077	inter
LNCA_21_P0002633	3.0723286	P	3.5409026	P	0.722678560489877	0	lncRNA	TCONS_00005038	NA	NA	NA	NA	XLOC_001910	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001910), lincRNA [TCONS_00005038]"	chr2:238165827-238166109	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_00005038	TCONS_00005038	chr2	238165827	238166109	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004090	0.8912157	A	0.89051414	A	1.00048640259139	0	lncRNA	ENST00000509745	NA	NA	NA	NA	XLOC_004711	NA	ENST00000509745	NA	NA	"BROAD Institute lincRNA (XLOC_004711), lincRNA [TCONS_00009583]"	chr5:2834774-2831156	hs|5p15.33	Agilent_HUMAN_G3V2	ENST00000509745	ENST00000509745	chr5	  2831156	  2834774	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16281_PI429285431	2.410921	A	2.6910942	A	0.823492148554542	0	lncRNA	17986-1_{1..356}	lnc-ASF1A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASF1A-3:1	chr6	119916051	119916406	+	lnc-ASF1A-3	lnc-ASF1A-3:1	XLOC_005449	linc-GJA1-2	NA	NA	NA	inter
CUST_7097_PI429285431	3.8348498	P	3.6971655	P	1.10013784363889	0	lncRNA	7032-1_{1..2356}	"transcript_id ""ENST00000602812.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000602812.1"" | genecode_v17"	chrX	 73247971	 73250326	-	ENSG00000230590.3	ENST00000602812.1	FTX	FTX-009	LOC100506745	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RPSA:range=chr3:39449145-394538595'pad=0,hg19_refFlat_RPSA:range=chr3:39449145-394538595'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60chrX:73280376-73286133"	NA	inter
CUST_34276_PI429285431	2.1485999	A	0.88260484	A	2.40493026294734	0	lncRNA	35775-1_{1..818}	n341132|X60491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3598|NULL|-1.0263700|-0.2446249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341132|X60491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3598|NULL|-1.0263700|-0.2446249	chr11	118215100	118215917	-	NA	NA	NA	NA	UBE4A	"hg19_refFlat_CD3G:range=chr11:118215139-1182231845'pad=0,hg19_refFlat_CD3G:range=chr11:118215139-1182231845'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70chr11:118230296-118234047"	NA	inner
CUST_17086_PI429285431	0.9041452	A	1.3766847	A	0.720694879389583	0	lncRNA	18794-1_{1..652}	lnc-ANKRD60-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD60-1:1	chr20	 56747123	 56747774	-	lnc-ANKRD60-1	lnc-ANKRD60-1:1	XLOC_013818	linc-PMEPA1-1	NA	NA	NA	inter
CUST_10226_PI429285431	0.8969054	A	0.9086558	A	0.991888322033024	0	lncRNA	11750-2_{3001..4004}	lnc-BMP6-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BMP6-9:1	chr6	  8941777	  8942780	+	lnc-BMP6-9	lnc-BMP6-9:1	XLOC_005164	linc-GCNT2-4	NA	NA	NA	inter
CUST_5208_PI429285431	0.9148157	A	0.9209637	A	0.995747598307966	0	lncRNA	5148-1_{1..816}	"transcript_id ""ENST00000559821.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559821.1"" | genecode_v17"	chr15	 63682429	 63683244	+	ENSG00000259459.1	ENST00000559821.1	RP11-321G12.1	RP11-321G12.1-002	CA12	NA	chr15:63672429-63674075	inter
CUST_34759_PI429285431	2.8942811	A	3.2450066	P	0.784189646784242	0	lncRNA	36201-1_{1..3000}	n341669|BX538226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4140|NULL|0.3271770|-0.3689391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341669|BX538226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4140|NULL|0.3271770|-0.3689391	chr9	 27937614	 27940613	-	NA	NA	NA	NA	LINGO2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr9:27948528-27954495"	NA	inter
CUST_15964_PI429285431	0.89652956	A	0.9143814	A	0.987702289989301	0	lncRNA	17662-1_{1..722}	lnc-ENPP1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENPP1-4:4	chr6	132481907	132482628	+	lnc-ENPP1-4	lnc-ENPP1-4:4	XLOC_005465	linc-TAAR9-1	NA	NA	NA	inter
CUST_35759_PI429285431	0.886115	A	0.8839383	A	1.00150991223926	0	lncRNA	37179-1_{1..940}	n342971|NULL|mRNAlikelncRNA|Homosapiens|ST7OT|lncRNAdb|342971|http://lncrnadb.com/Detail.aspx?TKeyID=204|-1.4276400|-0.3300175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342971|NULL|mRNAlikelncRNA|Homosapiens|ST7OT|lncRNAdb|342971|http://lncrnadb.com/Detail.aspx?TKeyID=204|-1.4276400|-0.3300175	NA	NA	      939	NA	NA	NA	NA	NA	NA	"hg19_refFlat_ST7:range=chr7:116593595-1168699115'pad=0,hg19_refFlat_ST7:range=chr7:116593595-1168699115'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ST7:range=chr7:116593595-1168630345'pad=0,hg19_refFlat_ST7:range=chr7:116593595-1168630345'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10"	NA	Unknown
CUST_17570_PI429285431	2.3593657	A	2.337411	A	1.01533421931377	0	lncRNA	19299-1_{1..346}	lnc-AMY1B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AMY1B-2:2	chr1	106021740	106022085	-	lnc-AMY1B-2	lnc-AMY1B-2:2	XLOC_000947	linc-AMY1A-3	NA	NA	NA	inter
CUST_3787_PI429285431	0.95165944	A	0.88343936	A	1.048422397882	0	lncRNA	3755-1_{1..665}	"transcript_id ""ENST00000452286.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452286.1"" | genecode_v17"	chr10	107923106	107923770	+	ENSG00000229775.2	ENST00000452286.1	RP11-298H24.1	RP11-298H24.1-004	NA	NA	NA	inter
CUST_40766_PI429285431	0.8866247	M	1.0341784	A	0.902779960682847	0	lncRNA	41488-1_{1..3000}	n410482|NR_037625_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_7||0.6418800|-0.2679819	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410482|NR_037625_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_7||0.6418800|-0.2679819	chr6	  4369432	  4372431	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20"	NA	inter
CUST_21413_PI429285431	1.0752517	A	0.92237365	A	1.11178517512391	0	lncRNA	23033-1_{1..401}	lnc-AGPAT5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGPAT5-2:1	chr8	  6787862	  6788262	+	lnc-AGPAT5-2	lnc-AGPAT5-2:1	ENSG00000254625.1	GS1-24F4.3	DEFA6	NA	chr8:6782216-6783598	inter
CUST_25386_PI429285431	3.8302493	P	4.0394835	P	0.864996259958749	0	lncRNA	26917-1_{1..449}	lnc-SLC25A32-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A32-3:1	chr8	104513628	104514076	-	lnc-SLC25A32-3	lnc-SLC25A32-3:1	ENSG00000253477.1	RP11-1C8.4	RIMS2	NA	chr8:104512976-104523904	inner
CUST_4072_PI429285431	1.0964997	A	0.9094809	A	1.13840886377423	0	lncRNA	4033-1_{1..499}	"transcript_id ""ENST00000604700.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604700.1"" | genecode_v17"	chr11	110960594	110961092	-	ENSG00000271390.1	ENST00000604700.1	RP11-89C3.3	RP11-89C3.3-001	NA	NA	NA	inter
LNCA_21_P0011214	0.9046888	A	0.92589325	A	0.985409680754567	0	lncRNA	ENST00000434601	XR_132734	XR_132734	NA	NA	XLOC_l2_003897	NA	ENST00000434601	THC2639268	NA	"PREDICTED: Homo sapiens hypothetical LOC100652865 (LOC100652865), miscRNA [XR_132734]"	chr13:21877714-21877655	hs|13q12.11	Agilent_HUMAN_G3V2	ENST00000434601	ENST00000434601	chr13	 21877655	 21877714	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29771_PI429285431	13.487507	P	13.564955	P	0.947732620078834	0	lncRNA	31534-1_{1..273}	n333468|BC023210|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090735|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090735|-1.1102100|-0.1614987	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333468|BC023210|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090735|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090735|-1.1102100|-0.1614987	chr9	130267610	130267882	-	NA	NA	NA	NA	FAM129B	NA	chr9:130267618-130277883	inner
CUST_18978_PI429285431	0.90538055	A	0.9131649	A	0.994618830389548	0	lncRNA	20670-1_{1..1674}	lnc-BASP1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BASP1-6:1	chr5	 16629563	 16631236	+	lnc-BASP1-6	lnc-BASP1-6:1	ENSG00000246214	RP11-260E18.1	NA	NA	NA	inter
CUST_10199_PI429285431	0.89717233	A	0.9139723	A	0.988422687033925	0	lncRNA	11725-1_{1..359}	lnc-PARP11-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PARP11-3:1	chr12	  4105815	  4106173	-	lnc-PARP11-3	lnc-PARP11-3:1	XLOC_009984	linc-PARP11-3	NA	NA	NA	inter
CUST_14468_PI429285431	12.558001	P	13.20978	P	0.636494961986543	0	lncRNA	16131-1_{1..518}	lnc-RAB2A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB2A-1:2	chr8	 61028358	 61028875	+	lnc-RAB2A-1	lnc-RAB2A-1:2	XLOC_006814	linc-RAB2A-1	NA	NA	NA	inter
LNCA_21_P0011096	1.029079	A	0.9260692	A	1.07401176718798	0	lncRNA	TCONS_l2_00006290	NA	NA	NA	NA	XLOC_l2_003400	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003400), lincRNA [TCONS_l2_00006290]"	chr12:58993993-58993934	hs|12q14.1	Agilent_HUMAN_G3V2	TCONS_l2_00006290	TCONS_l2_00006290	chr12	 58993934	 58993993	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49295_PI429285431	0.9260646	A	1.4065112	A	0.716755711100404	0	lncRNA	53112-1_{1..507}	hg19_lincRNAsTranscripts_TCONS_l2_00022177 range=chr5:7289957-7305002 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022177 range=chr5:7289957-7305002 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	  7289957	  7290463	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012806	0.9082318	A	0.9237296	A	0.989315235612419	0	lncRNA	ENST00000505848	NA	NA	NA	NA	XLOC_l2_011302	NA	ENST00000505848	THC2681431	NA	"BROAD Institute lincRNA (XLOC_l2_011302), lincRNA [TCONS_l2_00022019]"	chr4:147032370-147032311	hs|4q31.22	Agilent_HUMAN_G3V2	ENST00000505848	ENST00000505848	chr4	147032311	147032370	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35499_PI429285431	4.323515	P	4.079508	P	1.18427735798927	0	lncRNA	36907-1_{1..2568}	n342600|BC042091|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5101|NULL|-1.0160200|-0.2463908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342600|BC042091|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5101|NULL|-1.0160200|-0.2463908	chr4	 53811820	 53814387	+	NA	NA	NA	NA	SCFD2	NA	chr4:53801820-53827189	inner
CUST_16919_PI429285431	0.8916765	A	0.9007969	A	0.993698160860987	0	lncRNA	18629-1_{1..404}	lnc-GPCPD1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPCPD1-1:5	chr20	  5490522	  5490925	-	lnc-GPCPD1-1	lnc-GPCPD1-1:5	XLOC_013643	linc-PROKR2-4	NA	NA	NA	inter
CUST_33094_PI429285431	2.178211	A	2.5977209	A	0.747678576140526	0	lncRNA	34698-1_{1..2337}	n339784|BC041471|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2231|NULL|-1.0997000|-0.2172160	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339784|BC041471|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2231|NULL|-1.0997000|-0.2172160	chr18	  6954675	  6957011	+	NA	NA	NA	NA	LAMA1	"hg19_refFlat_LAMA1:range=chr18:6942078-71177195'pad=0,hg19_refFlat_LAMA1:range=chr18:6942078-71177195'pad=0 3'pad=0 strand=- repeatMasking=none,-94.20chr18:6944675-6967418"	NA	inner
CUST_39436_PI429285431	0.91499376	A	1.6234782	A	0.611962671839328	0	lncRNA	40384-1_{1..390}	n386741|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tmp.1||1.8159100|-0.0920460	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386741|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tmp.1||1.8159100|-0.0920460	chr14	 22564301	 22564690	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39044_PI429285431	0.9188973	A	0.92749864	A	0.994055742851945	0	lncRNA	40023-1_{1..2519}	n385467|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003yvk.1||-1.0661100|-0.2520273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385467|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003yvk.1||-1.0661100|-0.2520273	chr8	141111256	141113774	-	NA	NA	NA	NA	TRAPPC9	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-18.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60chr8:141101256-141123775"	NA	inner
LNCA_21_P0007215	3.0468075	P	3.321257	P	0.826765733193229	0	lncRNA	THC2653254	NA	NA	NA	NA	XLOC_009146	NA	NA	THC2653254	NA	"BROAD Institute lincRNA (XLOC_009146), lincRNA [TCONS_00019313]"	chr11:061274039-061274098	hs|11q12.2	Agilent_HUMAN_G3V2	THC2653254	THC2653254	chr11	 61274039	 61274098	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38294_PI429285431	1.2674731	A	0.9057938	A	1.28492067774676	0	lncRNA	39347-1_{1..586}	n381950|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uhk.3||3.6236900|-0.3923879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381950|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uhk.3||3.6236900|-0.3923879	chr12	127215246	127215831	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13959_PI429285431	1.0726752	A	0.91500956	A	1.11548076777087	0	lncRNA	15604-1_{1..1278}	lnc-C15orf2-2:22	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-2:22	chr15	 24832714	 24833991	+	lnc-C15orf2-2	lnc-C15orf2-2:22	XLOC_011181	linc-C15orf2-1	NA	NA	NA	inter
CUST_20194_PI429285431	0.9231491	A	0.91313267	A	1.00696701774284	0	lncRNA	21837-1_{1..398}	lnc-OTUD6B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OTUD6B-1:1	chr8	 92030637	 92031034	+	lnc-OTUD6B-1	lnc-OTUD6B-1:1	ENSG00000253358.1	GS1-251I9.3	TMEM55A	"hg19_refFlat_TMEM55A:range=chr8:92007905-920529775'pad=0,hg19_refFlat_TMEM55A:range=chr8:92007905-920529775'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60chr8:92020637-92040883"	NA	inner
CUST_37843_PI429285431	0.8845432	A	1.4153156	A	0.692184048574525	0	lncRNA	38934-1_{1..539}	n346368|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1918|NULL|-1.4181700|-0.3536830	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346368|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1918|NULL|-1.4181700|-0.3536830	chr8	101487930	101488468	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008834	2.884694	A	2.5333688	A	1.27573192387031	0	lncRNA	TCONS_00023980	NA	NA	NA	NA	XLOC_011309	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011309), lincRNA [TCONS_00023980]"	chr15:74346999-74347058	hs|15q24.1	Agilent_HUMAN_G3V2	TCONS_00023980	TCONS_00023980	chr15	 74346999	 74347058	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003839	2.1603382	A	0.8987874	A	2.39753321130553	0	lncRNA	TCONS_00008846	NA	NA	NA	NA	XLOC_003616	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003616), lincRNA [TCONS_00008846]"	chr4:99885473-99885532	hs|4q23	Agilent_HUMAN_G3V2	TCONS_00008846	TCONS_00008846	chr4	 99885473	 99885532	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18524_PI429285431	1.6330986	A	1.4518012	A	1.13390313371522	0	lncRNA	20238-1_{1..511}	lnc-NCKAP1L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NCKAP1L-1:2	chr12	 54830616	 54831126	+	lnc-NCKAP1L-1	lnc-NCKAP1L-1:2	ENSG00000258137	RP11-753H16.3	NA	NA	NA	inter
CUST_44515_PI429285431	6.821151	P	6.551105	P	1.20584627520932	0	lncRNA	49112-2_{3001..4525}	"gi|221316656|ref|NR_026591.1| Homo sapiens RAD1 homolog (S. pombe) (RAD1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|221316656|ref|NR_026591.1| Homo sapiens RAD1 homolog (S. pombe) (RAD1), transcript variant 2, non-coding RNA"	Chr5	 34908365	 34909889	-	5810	NR_026591.1	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80"	NA	inter
LNCA_21_P0001606	0.8905536	A	0.8961878	A	0.996102286038483	0	lncRNA	ENST00000451690	NA	NA	NA	NA	XLOC_001134	NA	ENST00000451690	NA	NA	"BROAD Institute lincRNA (XLOC_001134), lincRNA [TCONS_00001763]"	chr1:192917345-192917286	hs|1q31.2	Agilent_HUMAN_G3V2	ENST00000451690	ENST00000451690	chr1	192917286	192917345	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00317974	4.8018274	P	4.906033	P	0.930317067783708	0	lncRNA	ENST00000456795	NA	NA	NA	NA	XLOC_005342	NA	ENST00000456795	NA	NA	"BROAD Institute lincRNA (XLOC_005342), lincRNA [TCONS_00011323]"	chr6:72039422-72039481	hs|6q13	Agilent_HUMAN_G3V2	ENST00000456795	ENST00000456795	chr6	 72039422	 72039481	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50306_PI429285431	0.90723455	A	0.9026151	A	1.00320709048889	0	lncRNA	54025-1_{1..479}	hg19_lincRNAsTranscripts_TCONS_l2_00029510 range=chr9:99932758-99935447 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029510 range=chr9:99932758-99935447 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 99932758	 99933236	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6853_PI429285431	6.724812	P	6.533802	P	1.14156261980846	0	lncRNA	6801-1_{1..698}	"transcript_id ""ENST00000455028.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455028.1"" | genecode_v17"	chr21	 36508935	 36509632	+	ENSG00000234703.1	ENST00000455028.1	AF015262.2	AF015262.2-001	NA	NA	NA	inter
CUST_3127_PI429285431	1.1056662	A	0.91857576	A	1.13846539521964	0	lncRNA	3106-1_{1..625}	"transcript_id ""ENST00000518536.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518536.1"" | genecode_v17"	chr8	 59004001	 59004625	-	ENSG00000253116.1	ENST00000518536.1	RP11-648L3.2	RP11-648L3.2-001	FAM110B	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-96.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70chr8:58994001-59028853"	NA	inner
CUST_42262_PI429285431	2.4474556	A	2.0356064	A	1.330389972679	0	lncRNA	44721-1_{1..123}	ENST00000516111 ncrna:rRNA chromosome:GRCh37:6:126300958:126301080:-1 gene:ENSG00000251920 gene_biotype:rRNA transcript_biotype:rRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516111 ncrna:rRNA chromosome:GRCh37:6:126300958:126301080:-1 gene:ENSG00000251920 gene_biotype:rRNA transcript_biotype:rRNA	chr6	126300958	126301080	-	ENSG00000251920	ENST00000516111	NA	NA	TRMT11	NA	chr6:126307576-126311080	inner
LNCA_19_P00809902	11.226235	P	11.044466	P	1.13427385387004	0	lncRNA	XR_108713	XR_108713	XR_108713	NA	NA	LOC100506380	NA	NA	THC2644639	NA	"PREDICTED: Homo sapiens hypothetical LOC100506380, transcript variant 2 (LOC100506380), miscRNA [XR_108713]"	chr7:156264874-156264815	hs|7q36.3	Agilent_HUMAN_G3V2	XR_108713	XR_108713	chr7	156264815	156264874	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24583_PI429285431	1.3457762	A	2.7161317	A	0.386795924779127	0	lncRNA	26132-1_{1..547}	lnc-C5orf63-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C5orf63-3:1	chr5	126999558	127000104	-	lnc-C5orf63-3	lnc-C5orf63-3:1	ENSG00000248799.1	CTC-548H10.2	CTXN3	NA	chr5:126989558-126994322	inter
CUST_28374_PI429285431	0.88533056	A	1.5294871	A	0.639866774244839	0	lncRNA	30025-1_{1..601}	n325688|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045353|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045353|-1.2523500|-0.4044514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325688|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045353|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045353|-1.2523500|-0.4044514	chr13	 77300357	 77300957	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17218_PI429285431	0.90422297	A	0.9120682	A	0.994576859553663	0	lncRNA	18932-1_{1..2392}	lnc-RP11-82I10.1.1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-82I10.1.1-4:2	chr15	 98559659	 98562050	-	lnc-RP11-82I10.1.1-4	lnc-RP11-82I10.1.1-4:2	XLOC_011603	linc-RGMA-6	NA	NA	NA	inter
LNCA_21_P0010690	3.8864486	P	3.5264313	P	1.28344128778781	0	lncRNA	TCONS_l2_00001962	NA	NA	NA	NA	XLOC_l2_000037	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000037), lincRNA [TCONS_l2_00001962]"	chr1:3821934-3821993	hs|1p36.32	Agilent_HUMAN_G3V2	TCONS_l2_00001962	TCONS_l2_00001962	chr1	  3821934	  3821993	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32082_PI429285431	3.9104686	P	4.0569477	P	0.903452652215385	0	lncRNA	33789-1_{1..1566}	n338646|AK094521|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1060|NULL|-0.8703460|-0.3010835	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338646|AK094521|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1060|NULL|-0.8703460|-0.3010835	chr2	  8861263	  8862828	-	NA	NA	NA	NA	KIDINS220	NA	chr2:8868987-8872816	inter
CUST_19002_PI429285431	2.6704457	A	2.6369512	A	1.02348822175265	0	lncRNA	20692-1_{1..376}	lnc-AC005493.1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC005493.1-1:8	chr7	 34797686	 34798061	-	lnc-AC005493.1-1	lnc-AC005493.1-1:8	ENSG00000197085	AC005688.1	NPSR1	NA	chr7:34787686-34807884	inter
CUST_7_PI429201921	10.803194	P	10.95186	P	0.902084196766707	0	lncRNA	7-1_{1..642}	TC02004605.hg.1	TCONS_l2_00014930-XLOC_l2_008285 // Broad TUCP // linc-CXCR4-1 chr2:-:137086862-137087345 // chr2 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00014931-XLOC_l2_008285 // Broad TUCP // linc-CXCR4-1 chr2:-:137086871-137087504 // chr2 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00014932-XLOC_l2_008285 // Broad TUCP // linc-CXCR4-1 chr2:-:137086871-137087505 // chr2 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr2:-:137086862-137087345	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00014930-XLOC_l2_008285	linc-CXCR4-1	chr2	137086862	137087345	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11130_PI429285431	3.0982616	P	3.5943375	P	0.709032714738822	0	lncRNA	12688-1_{1..1336}	lnc-TRIML1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIML1-3:3	chr4	189357858	189359193	+	lnc-TRIML1-3	lnc-TRIML1-3:3	XLOC_003834	linc-FRG1-10	NA	NA	NA	inter
CUST_19246_PI429285431	8.8895235	P	8.729828	P	1.11705134462795	0	lncRNA	20915-1_{1..547}	lnc-ACSS3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACSS3-2:1	chr12	 81823782	 81824328	+	lnc-ACSS3-2	lnc-ACSS3-2:1	ENSG00000258162.1	RP11-315E17.1	PPFIA2	NA	chr12:81813782-81834122	inner
CUST_41368_PI429285431	7.0575166	P	6.9659805	P	1.06550406710428	0	lncRNA	42449-1_{1..96}	ENST00000408181 ncrna:miRNA chromosome:GRCh37:10:135473084:135473179:-1 gene:ENSG00000221108 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408181 ncrna:miRNA chromosome:GRCh37:10:135473084:135473179:-1 gene:ENSG00000221108 gene_biotype:miRNA transcript_biotype:miRNA	chr10	135473084	135473179	-	ENSG00000221108	ENST00000408181	NA	NA	NA	NA	NA	inter
CUST_3_PI429285431	1.3275641	A	1.287868	A	1.02789727993092	0	lncRNA	3-1_{1..695}	"transcript_id ""ENST00000557729.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000557729.1"" | genecode_v17"	chr2	119591401	119592095	-	ENSG00000258910.2	ENST00000557729.1	RP11-19E11.1	RP11-19E11.1-001	EN1	NA	chr2:119599747-119602686	inter
CUST_1836_PI429285431	1.1490327	A	1.1570015	A	0.994491675508608	0	lncRNA	1825-1_{1..549}	"transcript_id ""ENST00000504082.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504082.1"" | genecode_v17"	chr4	106058437	106058985	-	ENSG00000251259.1	ENST00000504082.1	AC004069.2	AC004069.2-001	TET2	NA	chr4:106067032-106071776	inter
LNCA_21_P0005769	0.8867394	A	0.88596696	A	1.00053555796814	0	lncRNA	TCONS_00014869	NA	NA	NA	NA	XLOC_006938	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006938), lincRNA [TCONS_00014869]"	chr8:137768159-137768218	hs|8q24.23	Agilent_HUMAN_G3V2	TCONS_00014869	TCONS_00014869	chr8	137768159	137768218	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1518_PI429285431	1.1924167	A	1.296898	A	0.930139300547858	0	lncRNA	1505-1_{1..716}	"transcript_id ""ENST00000488999.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000488999.1"" | genecode_v17"	chr3	157734005	157734720	-	ENSG00000242536.1	ENST00000488999.1	RP11-290K4.2	RP11-290K4.2-002	SHOX2	NA	chr3:157813800-157816772	inter
CUST_22182_PI429285431	4.0956106	P	3.7803078	P	1.2442727800447	0	lncRNA	23784-1_{1..3000}	lnc-ARC-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARC-1:4	chr8	143751347	143754346	-	lnc-ARC-1	lnc-ARC-1:4	ENSG00000234616.3	JRK	PSCA	NA	chr8:143751726-143761350	inner
CUST_50894_PI429285431	2.3107693	A	2.8276334	A	0.698889317291287	0	lncRNA	54536-2_{3001..4787}	hg19_lincRNAsTranscripts_TCONS_l2_00006027 range=chr12:132906471-132912612 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006027 range=chr12:132906471-132912612 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	132909471	132911257	+	NA	NA	NA	NA	GALNT9	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90chr12:132896471-132905905"	NA	inter
CUST_25417_PI429285431	0.8837235	A	0.88134617	A	1.00164919802047	0	lncRNA	26947-1_{1..1512}	lnc-SNURF-3:21	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNURF-3:21	chr15	 25663081	 25664592	+	lnc-SNURF-3	lnc-SNURF-3:21	ENSG00000224078.4	SNHG14	SNRPN	NA	chr15:25653081-25664609	inner
LNCA_32_P138042	7.9552555	P	7.1300616	P	1.77177315070852	0	lncRNA	XR_132684	XR_132684	XR_132684	100652805	Hs.715338	LOC100652805	uncharacterized LOC100652805	NA	THC2562052	NA	"PREDICTED: Homo sapiens hypothetical LOC100652805 (LOC100652805), miscRNA [XR_132684]"	chrX:77381418-77381359	hs|Xq21.1	Agilent_HUMAN_G3V2	XR_132684	XR_132684	chrX	 77381359	 77381418	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008762	0.889547	A	0.888778	A	1.00053317226768	0	lncRNA	TCONS_00023747	NA	NA	NA	NA	XLOC_011540	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011540), lincRNA [TCONS_00023747]"	chr15:79010771-79010712	hs|15q25.1	Agilent_HUMAN_G3V2	TCONS_00023747	TCONS_00023747	chr15	 79010712	 79010771	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7594_PI429285431	0.91233194	A	0.8884317	A	1.01670436741883	0	lncRNA	9230-1_{1..426}	lnc-MEIS1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MEIS1-6:1	chr2	 66126326	 66126751	+	lnc-MEIS1-6	lnc-MEIS1-6:1	ENSG00000204929	XLOC_001505	NA	NA	NA	inter
CUST_24747_PI429285431	1.2537341	A	1.7594266	A	0.704322218638773	0	lncRNA	26291-2_{3001..3970}	lnc-TEKT3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TEKT3-1:1	chr17	 15146744	 15147713	-	lnc-TEKT3-1	lnc-TEKT3-1:1	ENSG00000265308.1	RP11-849N15.2	PMP22	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20chr17:15133744-15157713"	NA	inner
CUST_27206_PI429285431	0.8997617	A	1.5111802	A	0.654552809949148	0	lncRNA	28748-1_{1..378}	n324338|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042647|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042647|-0.8798370|-0.1631915	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324338|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042647|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042647|-0.8798370|-0.1631915	chr6	149923980	149924357	+	NA	NA	NA	NA	KATNA1	NA	chr6:149916009-149936778	inner
CUST_30703_PI429285431	2.5007572	A	2.5694985	A	0.95346950341822	0	lncRNA	32485-1_{1..402}	n336209|X94046|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324808|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324808|2.5525700|-0.0510860	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336209|X94046|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324808|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324808|2.5525700|-0.0510860	chr14	107034727	107035128	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9144_PI429285431	3.3422697	P	3.8682594	P	0.694482526064486	0	lncRNA	10663-1_{1..841}	lnc-SERPINC1-1:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:17	chr1	173836129	173836969	-	lnc-SERPINC1-1	lnc-SERPINC1-1:17	ENSG00000234741	GAS5	DARS2	NA	chr1:173826129-173827682	inter
LNCA_21_P0005878	9.395117	P	9.677088	P	0.822466601168068	0	lncRNA	ENST00000524369	NA	NA	NA	NA	XLOC_007171	NA	ENST00000524369	NA	NA	"BROAD Institute lincRNA (XLOC_007171), lincRNA [TCONS_00015115]"	chr8:102138349-102138290	hs|8q22.3	Agilent_HUMAN_G3V2	ENST00000524369	ENST00000524369	chr8	102138290	102138349	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44500_PI429285431	2.742262	A	3.3512583	P	0.655652688621774	0	lncRNA	49100-1_{1..2619}	"gi|374671831|ref|NR_046285.1| Homo sapiens uncharacterized LOC100130744 (LOC100130744), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374671831|ref|NR_046285.1| Homo sapiens uncharacterized LOC100130744 (LOC100130744), non-coding RNA"	Chr5	 14712803	 14715421	+	100130744	NR_046285.1	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ANKH:range=chr5:14711306-148715565'pad=0,hg19_refFlat_ANKH:range=chr5:14711306-148715565'pad=0 3'pad=0 strand=- repeatMasking=none,-103.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
LNCA_21_P0009355	0.8928168	A	0.8923324	A	1.00033581686813	0	lncRNA	ENST00000543512	NA	NA	NA	NA	XLOC_012564	NA	ENST00000543512	NA	NA	"BROAD Institute lincRNA (XLOC_012564), lincRNA [TCONS_00025746]"	chr17:70030109-70030050	hs|17q24.3	Agilent_HUMAN_G3V2	ENST00000543512	ENST00000543512	chr17	 70030050	 70030109	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49062_PI429285431	5.9248385	P	6.107523	P	0.881062030696889	0	lncRNA	52887-2_{3001..3306}	hg19_lincRNAsTranscripts_TCONS_l2_00020966 range=chr4:189659760-189663173 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020966 range=chr4:189659760-189663173 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	189662760	189663065	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34870_PI429285431	7.6844506	P	7.783395	P	0.933715928684446	0	lncRNA	36296-1_{1..1077}	n341782|BC034458|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4259|NULL|2.0482400|-0.0525210	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341782|BC034458|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4259|NULL|2.0482400|-0.0525210	chr9	126774114	126775190	+	NA	NA	NA	NA	LHX2	NA	chr9:126773889-126787641	inner
CUST_7940_PI429285431	2.2007518	A	2.440023	A	0.847173167081153	0	lncRNA	9552-1_{1..1265}	lnc-WDFY4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDFY4-2:1	chr10	 49812817	 49814081	+	lnc-WDFY4-2	lnc-WDFY4-2:1	ENSG00000250000	ENST00000515396	ARHGAP22	NA	chr10:49802817-49813138	inner
CUST_15_PI429201921	12.098375	P	11.759742	P	1.26455781687505	0	lncRNA	16-1_{1..855}	TC03002843.hg.1	TCONS_l2_00019209-XLOC_l2_010139 // Broad TUCP // linc-SLC4A7 chr3:-:27674463-27675319 // chr3 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr3:-:27674463-27675319	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00019209-XLOC_l2_010139	linc-SLC4A7	chr3	 27674463	 27675319	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41445_PI429285431	1.8825997	A	1.3756571	A	1.42103550381699	0	lncRNA	42623-1_{1..90}	ENST00000385084 ncrna:miRNA chromosome:GRCh37:15:89911248:89911337:1 gene:ENSG00000207819 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385084 ncrna:miRNA chromosome:GRCh37:15:89911248:89911337:1 gene:ENSG00000207819 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 89911248	 89911337	+	ENSG00000207819	ENST00000385084	NA	NA	NA	NA	NA	inter
CUST_41302_PI429285431	2.50308	A	2.4459136	A	1.04042026135306	0	lncRNA	42305-1_{1..69}	ENST00000584938 ncrna:miRNA chromosome:GRCh37:6:16141787:16141855:1 gene:ENSG00000263712 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584938 ncrna:miRNA chromosome:GRCh37:6:16141787:16141855:1 gene:ENSG00000263712 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 16141787	 16141855	+	ENSG00000263712	ENST00000584938	NA	NA	MYLIP	NA	chr6:16131787-16148479	inner
CUST_47746_PI429285431	1.437102	A	1.2669724	A	1.12515955534114	0	lncRNA	51692-3_{6001..6719}	"gi|385137106|ref|NR_047644.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 74, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137106|ref|NR_047644.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 74, non-coding RNA"	ChrY	 15366259	 15366977	-	7404	NR_047644.1	NA	NA	NA	NA	NA	inter
CUST_25314_PI429285431	3.3220668	P	3.951091	P	0.646613619451318	0	lncRNA	26844-1_{1..360}	lnc-MARCH11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MARCH11-2:1	chr5	 15607269	 15607628	-	lnc-MARCH11-2	lnc-MARCH11-2:1	ENSG00000250250.1	CTD-2350J17.1	FBXL7	NA	chr5:15597269-15617457	inner
CUST_10501_PI429285431	4.327201	P	4.5143237	P	0.878355761642661	0	lncRNA	12028-1_{1..859}	lnc-C9orf170-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf170-1:6	chr9	 89611181	 89612039	+	lnc-C9orf170-1	lnc-C9orf170-1:6	XLOC_007438	linc-C9orf170-1	NA	NA	NA	inter
CUST_27754_PI429285431	1.4960827	A	1.6585413	A	0.893501093497187	0	lncRNA	29335-1_{1..551}	n324970|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079616|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079616|-0.0948688|-0.1591828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324970|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079616|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079616|-0.0948688|-0.1591828	chr20	 46420835	 46421385	-	NA	NA	NA	NA	SULF2	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90chr20:46410835-46415360"	NA	inter
CUST_9354_PI429285431	4.5381556	P	5.450795	P	0.531212352584488	0	lncRNA	10858-1_{1..2037}	lnc-FBXL14-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXL14-2:1	chr12	  1778146	  1780182	-	lnc-FBXL14-2	lnc-FBXL14-2:1	XLOC_009974	linc-FBXL14	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_29587_PI429285431	4.760198	P	4.896503	P	0.909846453208409	0	lncRNA	31347-1_{1..484}	n333094|AF306678|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076866|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076866|2.1206700|-0.3280994	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333094|AF306678|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076866|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076866|2.1206700|-0.3280994	chr8	 27631903	 27632386	+	NA	NA	NA	NA	ESCO2	NA	chr8:27632058-27644074	inner
LNCA_21_P0009229	10.1124525	P	10.0096855	P	1.07383103036723	0	lncRNA	TCONS_00025333	NA	NA	NA	NA	XLOC_012145	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012145), lincRNA [TCONS_00025333]"	chr17:21356681-21356740	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_00025333	TCONS_00025333	chr17	 21356681	 21356740	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9204_PI429285431	2.8092937	A	2.4044132	A	1.32397923921239	0	lncRNA	10716-1_{1..751}	lnc-SOX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SOX2-1:1	chr3	180774485	180775235	+	lnc-SOX2-1	lnc-SOX2-1:1	ENSG00000243341	RP11-436A20.3	NA	NA	NA	inter
CUST_47455_PI429285431	4.654232	P	4.622801	P	1.02202536354491	0	lncRNA	51485-2_{3001..6000}	"gi|218082838|ref|NR_024583.1| Homo sapiens POM121 transmembrane nucleoporin-like 8 pseudogene (POM121L8P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|218082838|ref|NR_024583.1| Homo sapiens POM121 transmembrane nucleoporin-like 8 pseudogene (POM121L8P), non-coding RNA"	Chr22	 21639714	 21642713	+	29797	NR_024583.1	NA	NA	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0,hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-9.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70"	NA	inter
CUST_45604_PI429285431	1.27018	A	0.93985534	A	1.25729628107734	0	lncRNA	49992-1_{1..1815}	"gi|210147595|ref|NR_024340.1| Homo sapiens chromosome 10 open reading frame 40 (C10orf40), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|210147595|ref|NR_024340.1| Homo sapiens chromosome 10 open reading frame 40 (C10orf40), non-coding RNA"	Chr10	 61717975	 61719789	-	283025	NR_024340.1	NA	NA	NA	NA	NA	inter
CUST_37088_PI429285431	2.1875186	A	3.4353573	A	0.421078552708599	0	lncRNA	38215-1_{1..2984}	n345533|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1082|NULL|-1.3248400|-0.2227784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345533|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1082|NULL|-1.3248400|-0.2227784	chr2	 74211336	 74214319	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60"	NA	inter
CUST_32471_PI429285431	0.8898144	A	0.9012378	A	0.992113168055952	0	lncRNA	34140-1_{1..603}	n339073|AF086041|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1503|NULL|-1.2167000|-0.3771470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339073|AF086041|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1503|NULL|-1.2167000|-0.3771470	chr2	197961282	197961884	-	NA	NA	NA	NA	ANKRD44	NA	chr2:197951282-197971876	inner
CUST_11170_PI429285431	0.9139385	A	0.91036594	A	1.00247937847912	0	lncRNA	12727-1_{1..346}	lnc-UNC13C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UNC13C-2:1	chr15	 53392927	 53393272	+	lnc-UNC13C-2	lnc-UNC13C-2:1	XLOC_011259	linc-UNC13C-2	NA	NA	NA	inter
CUST_33505_PI429285431	1.0777751	A	1.3380878	A	0.834906936138592	0	lncRNA	35076-1_{1..1895}	n340243|AK024689|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2704|NULL|-1.3639500|-0.3983439	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340243|AK024689|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2704|NULL|-1.3639500|-0.3983439	chr4	145607899	145609793	+	NA	NA	NA	NA	HHIP	NA	chr4:145597899-145619768	inner
CUST_43836_PI429285431	5.1224985	P	4.7786007	P	1.26918097450951	0	lncRNA	48560-1_{1..1000}	"gi|310118918|ref|XR_109980.1| PREDICTED: Homo sapiens SIX3 antisense RNA 1, transcript variant 2 (SIX3-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310118918|ref|XR_109980.1| PREDICTED: Homo sapiens SIX3 antisense RNA 1, transcript variant 2 (SIX3-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_109980.1	NA	NA	NA	NA	NA	Unknown
CUST_9345_PI429285431	1.3123624	A	1.252862	A	1.04210482127216	0	lncRNA	10851-1_{1..1885}	lnc-SOX11-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOX11-3:3	chr2	  6141115	  6142999	+	lnc-SOX11-3	lnc-SOX11-3:3	XLOC_001327	linc-RSAD2-2	NA	NA	NA	inter
CUST_37455_PI429285431	1.3996109	A	1.1902885	A	1.15614504217375	0	lncRNA	38554-1_{1..1309}	n345905|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1454|NULL|-1.3521500|-0.3563518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345905|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1454|NULL|-1.3521500|-0.3563518	chr2	172127443	172128751	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50813_PI429285431	6.80052	P	7.0038633	P	0.868535486089207	0	lncRNA	54464-1_{1..868}	hg19_lincRNAsTranscripts_TCONS_l2_00005004 range=chr11:50238913-50255129 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005004 range=chr11:50238913-50255129 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	 50238913	 50239780	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48317_PI429285431	0.90624446	A	0.9084445	A	0.99847621062464	0	lncRNA	52175-1_{1..529}	hg19_lincRNAsTranscripts_TCONS_l2_00000171 range=chr1:26551996-26554224 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000171 range=chr1:26551996-26554224 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 26551996	 26552524	+	NA	NA	NA	NA	CEP85	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00chr1:26545577-26564224"	NA	inter
CUST_20946_PI429285431	1.7354833	A	0.97769403	A	1.69089757254035	0	lncRNA	22577-1_{1..546}	lnc-WDR67-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-WDR67-2:1	chr8	123828617	123829162	+	lnc-WDR67-2	lnc-WDR67-2:1	ENSG00000253372.1	RP11-44N11.1	ZHX2	NA	chr8:123818617-123838756	inner
CUST_48590_PI429285431	1.7210333	A	0.90835345	A	1.75647111284141	0	lncRNA	52437-1_{1..308}	hg19_lincRNAsTranscripts_TCONS_l2_00014471 range=chr2:22156119-22157845 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014471 range=chr2:22156119-22157845 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 22156119	 22156426	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20449_PI429285431	0.91070145	A	0.93894535	A	0.980613208880777	0	lncRNA	22093-1_{1..586}	lnc-CXorf67-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CXorf67-1:1	chrX	 51140968	 51141553	+	lnc-CXorf67-1	lnc-CXorf67-1:1	ENSG00000226530.1	RP11-348F1.2	NA	NA	NA	inter
CUST_32207_PI429285431	0.89605665	A	1.3009666	A	0.755283434518767	0	lncRNA	33903-2_{3001..3590}	n338783|AK095013|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1205|NULL|-1.2802600|-0.3762596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338783|AK095013|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1205|NULL|-1.2802600|-0.3762596	chr2	 40327915	 40328504	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011721	6.842489	P	7.639211	P	0.575655660896471	0	lncRNA	XR_109580	XR_109580	XR_109580	NA	Hs.445295	LOC100505555	uncharacterized LOC100505555	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505555 (LOC100505555), miscRNA [XR_109580]"	chr19:9898224-9898165	hs|19p13.2	Agilent_HUMAN_G3V2	XR_109580	XR_109580	chr19	  9898165	  9898224	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6191_PI429285431	0.90986526	A	0.911685	A	0.998739447514234	0	lncRNA	6115-1_{1..513}	"transcript_id ""ENST00000589662.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589662.1"" | genecode_v17"	chr18	 53388549	 53389061	+	ENSG00000267284.1	ENST00000589662.1	RP11-397A16.1	RP11-397A16.1-002	NA	NA	NA	inter
CUST_38297_PI429285431	1.1909158	A	0.9617637	A	1.17214585378575	0	lncRNA	39350-1_{1..2252}	n381965|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uiu.1||-1.0589200|-0.2422812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381965|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uiu.1||-1.0589200|-0.2422812	chr12	131510105	131512356	-	NA	NA	NA	NA	GPR133	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.52;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-21.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50chr12:131500105-131522357"	NA	inner
LNCA_21_P0007765	0.8989059	A	0.90823376	A	0.993555277026972	0	lncRNA	TCONS_00020935	NA	NA	NA	NA	XLOC_010206	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010206), lincRNA [TCONS_00020935]"	chr12:115525876-115525817	hs|12q24.21	Agilent_HUMAN_G3V2	TCONS_00020935	TCONS_00020935	chr12	115525817	115525876	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17234_PI429285431	2.2199218	A	2.5799358	A	0.779157018636944	0	lncRNA	18952-1_{1..442}	lnc-MYOF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYOF-1:1	chr10	 94819985	 94820426	-	lnc-MYOF-1	lnc-MYOF-1:1	XLOC_008907	linc-IDE-1	EXOC6	NA	chr10:94809985-94819251	inter
CUST_42406_PI429285431	3.400672	P	3.198235	P	1.15064037565815	0	lncRNA	45108-1_{1..86}	ENST00000458892 ncrna:snoRNA chromosome:GRCh37:14:45580086:45580171:1 gene:ENSG00000239043 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000458892 ncrna:snoRNA chromosome:GRCh37:14:45580086:45580171:1 gene:ENSG00000239043 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 45580086	 45580171	+	ENSG00000239043	ENST00000458892	NA	NA	FKBP3	NA	chr14:45584802-45590171	inner
CUST_8912_PI429285431	1.0941794	A	1.4897919	A	0.760166577369301	0	lncRNA	10447-1_{1..577}	lnc-CA8-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CA8-3:2	chr8	 61429157	 61429733	-	lnc-CA8-3	lnc-CA8-3:2	ENSG00000251396	ENSG00000251396.2	RAB2A	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90chr8:61429469-61439339"	NA	inter
LNCA_21_P0008702	0.89147437	A	0.8977482	A	0.995660754274493	0	lncRNA	TCONS_00023567	NA	NA	NA	NA	XLOC_011390	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011390), lincRNA [TCONS_00023567]"	chr15:101838668-101838727	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_00023567	TCONS_00023567	chr15	101838668	101838727	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50773_PI429285431	6.982978	P	7.253419	P	0.829066079893192	0	lncRNA	54431-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00004573 range=chr11:65266529-65274354 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004573 range=chr11:65266529-65274354 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65269529	 65272528	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007991	2.9824367	P	2.1822262	A	1.74135518480673	0	lncRNA	ENST00000421190	NA	NA	NA	NA	XLOC_010586	NA	ENST00000421190	NA	NA	"BROAD Institute lincRNA (XLOC_010586), lincRNA [TCONS_00021642]"	chr13:44806213-44806154	hs|13q14.11	Agilent_HUMAN_G3V2	ENST00000421190	ENST00000421190	chr13	 44806154	 44806213	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50152_PI429285431	6.493456	P	6.9862747	P	0.710635319803245	0	lncRNA	53877-1_{1..465}	hg19_lincRNAsTranscripts_TCONS_l2_00029895 range=chr9:2919099-2943654 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029895 range=chr9:2919099-2943654 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	  2919099	  2919563	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37649_PI429285431	5.8370576	P	5.6049757	P	1.17452864584898	0	lncRNA	38741-1_{1..916}	n346126|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1676|NULL|-1.3954500|-0.3023021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346126|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1676|NULL|-1.3954500|-0.3023021	chr15	 85058215	 85059130	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42057_PI429285431	1.1108041	A	1.0403582	A	1.05004117424473	0	lncRNA	43962-1_{1..90}	ENST00000384875 ncrna:miRNA chromosome:GRCh37:1:1103243:1103332:1 gene:ENSG00000207607 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384875 ncrna:miRNA chromosome:GRCh37:1:1103243:1103332:1 gene:ENSG00000207607 gene_biotype:miRNA transcript_biotype:miRNA	chr1	  1103243	  1103332	+	ENSG00000207607	ENST00000384875	NA	NA	TTLL10	NA	chr1:1109286-1113332	inter
LNCA_21_P0008624	7.0652943	P	7.5051785	P	0.737193778193606	0	lncRNA	TCONS_00023378	NA	NA	NA	NA	XLOC_011223	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011223), lincRNA [TCONS_00023378]"	chr15:41199979-41200038	hs|15q15.1	Agilent_HUMAN_G3V2	TCONS_00023378	TCONS_00023378	chr15	 41199979	 41200038	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9028_PI429285431	4.5015335	P	4.9398913	P	0.737974156604085	0	lncRNA	10556-1_{1..3000}	lnc-COPG2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-COPG2-1:1	chr7	130130683	130133682	-	lnc-COPG2-1	lnc-COPG2-1:1	ENSG00000246011	MESTIT1	MEST	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr7:130126046-130141013"	NA	inner
CUST_31653_PI429285431	2.7630215	A	2.4492002	A	1.24299569520769	0	lncRNA	33404-1_{1..2663}	n338175|BC043562|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|565|NULL|-0.0856143|-0.2393268	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338175|BC043562|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|565|NULL|-0.0856143|-0.2393268	chr15	101835623	101838285	+	NA	NA	NA	NA	PCSK6	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_PCSK6:range=chr15:101845463-1020298735'pad=0,hg19_refFlat_PCSK6:range=chr15:101845463-1020298735'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00chr15:101844133-101855942"	NA	inner
CUST_19009_PI429285431	0.901399	A	0.8904643	A	1.00760815250337	0	lncRNA	20699-1_{1..478}	lnc-TRAF5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRAF5-1:3	chr1	211565169	211565646	+	lnc-TRAF5-1	lnc-TRAF5-1:3	ENSG00000153363	C1orf97	NA	NA	NA	inter
LNCA_21_P0013310	1.7928749	A	2.296252	A	0.705453502073795	0	lncRNA	TCONS_l2_00026595	NA	NA	NA	NA	XLOC_l2_013849	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013849), lincRNA [TCONS_l2_00026595]"	chr7:57277559-57277500	hs|7p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00026595	TCONS_l2_00026595	chr7	 57277500	 57277559	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8683_PI429285431	1.1033335	A	0.9870587	A	1.08393241120884	0	lncRNA	10231-1_{1..798}	lnc-SDIM1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SDIM1-3:4	chr6	166401017	166401814	-	lnc-SDIM1-3	lnc-SDIM1-3:4	ENSG00000223414	C6orf176	NA	NA	NA	inter
CUST_9438_PI429285431	0.90068376	A	1.4611495	A	0.678083225241459	0	lncRNA	10944-1_{1..2409}	lnc-TMEM132D-3:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132D-3:12	chr12	130632957	130635365	-	lnc-TMEM132D-3	lnc-TMEM132D-3:12	XLOC_010262	linc-TMEM132D-3	NA	NA	NA	inter
CUST_8216_PI429285431	1.3876	A	1.3846354	A	1.00205701689391	0	lncRNA	9808-1_{1..473}	lnc-CA8-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CA8-3:3	chr8	 61421206	 61421678	-	lnc-CA8-3	lnc-CA8-3:3	ENSG00000251396	ENSG00000251396.2	RAB2A	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70chr8:61429469-61431318"	NA	inter
CUST_8423_PI429285431	6.6019783	P	6.4301686	P	1.12647063056514	0	lncRNA	9995-1_{1..775}	lnc-TSN-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSN-2:3	chr2	122408044	122408818	+	lnc-TSN-2	lnc-TSN-2:3	ENSG00000236859	XLOC_001646	CLASP1	NA	chr2:122398044-122407052	inter
LNCA_21_P0002968	0.88511205	A	3.0261493	P	0.226716728392439	0	lncRNA	TCONS_00006076	NA	NA	NA	NA	XLOC_002690	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002690), lincRNA [TCONS_00006076]"	chr3:66024864-66025776	hs|3p14.1	Agilent_HUMAN_G3V2	TCONS_00006076	TCONS_00006076	chr3	 66024864	 66025776	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47982_PI429285431	5.484497	P	5.4070234	P	1.05516864518399	0	lncRNA	51870-2_{3001..5198}	"gi|410172889|ref|XR_172042.1| PREDICTED: Homo sapiens uncharacterized LOC101060712 (LOC101060712), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172889|ref|XR_172042.1| PREDICTED: Homo sapiens uncharacterized LOC101060712 (LOC101060712), misc_RNA"	NA	NA	NA	NA	NA	XR_172042.1	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50"	NA	Unknown
CUST_18580_PI429285431	6.385311	P	5.1280565	P	2.39040405403804	0	lncRNA	20287-2_{3001..5998}	lnc-TKT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TKT-1:1	chr3	 53384410	 53387407	-	lnc-TKT-1	lnc-TKT-1:1	ENSG00000162290	DCP1A	DCP1A	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90chr3:53371410-53381654"	NA	inner
CUST_33686_PI429285431	1.8936212	A	1.3492671	A	1.45836728154064	0	lncRNA	35247-1_{1..1435}	n340459|S67156|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2920|NULL|4.6514100|-0.4062517	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340459|S67156|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2920|NULL|4.6514100|-0.4062517	chr17	  3379295	  3380729	+	NA	NA	NA	NA	SPATA22	NA	chr17:3369295-3375142	inner
LNCA_21_P0002672	0.88714147	A	0.8863946	A	1.00051782485977	0	lncRNA	TCONS_00005219	NA	NA	NA	NA	XLOC_002241	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002241), lincRNA [TCONS_00005219]"	chr2:105469578-105413578	hs|2q12.1	Agilent_HUMAN_G3V2	TCONS_00005219	TCONS_00005219	chr2	105413578	105469578	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002733	0.8873561	A	1.2021735	A	0.803952739537053	0	lncRNA	ENST00000455984	NA	NA	NA	NA	XLOC_002603	NA	ENST00000455984	THC2739678	NA	"BROAD Institute lincRNA (XLOC_002603), lincRNA [TCONS_00005504]"	chr3:27901624-27901683	hs|3p24.1	Agilent_HUMAN_G3V2	ENST00000455984	ENST00000455984	chr3	 27901624	 27901683	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39860_PI429285431	4.821581	P	2.1467264	A	6.38574348020409	0	lncRNA	40759-1_{1..3000}	n406513|NR_024020|lncRNA|Homosapiens||RefGeneNoncode|NR_024020||15.8698000|-0.1920768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406513|NR_024020|lncRNA|Homosapiens||RefGeneNoncode|NR_024020||15.8698000|-0.1920768	chr9	 95059639	 95062638	-	NA	NA	NA	NA	IARS	NA	chr9:95049639-95056038	inner
CUST_16664_PI429285431	2.4669402	A	4.6376543	P	0.222100708470154	0	lncRNA	18366-1_{1..230}	lnc-RASA1-3:22	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASA1-3:22	chr5	 87713004	 87713233	+	lnc-RASA1-3	lnc-RASA1-3:22	XLOC_004459	linc-POLR3G-8	NA	NA	NA	inter
CUST_32974_PI429285431	1.7139344	A	2.438836	A	0.605038310253285	0	lncRNA	34590-2_{3001..3283}	n339650|AK096620|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2094|NULL|11.7467000|-0.2990515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339650|AK096620|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2094|NULL|11.7467000|-0.2990515	chr3	155206176	155206458	-	NA	NA	NA	NA	PLCH1	NA	chr3:155197671-155404205	inner
CUST_38048_PI429285431	2.7976665	A	2.511905	A	1.21905354884549	0	lncRNA	39127-1_{1..2776}	n377621|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030005||-0.1478190|-0.2699537	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377621|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030005||-0.1478190|-0.2699537	chr6	   800170	   802945	+	NA	NA	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80"	NA	inter
CUST_14408_PI429285431	4.232791	P	4.303926	P	0.951888831456847	0	lncRNA	16067-3_{6001..7336}	lnc-RP11-210M15.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-210M15.2.1-1:1	chr15	 80702051	 80703386	-	lnc-RP11-210M15.2.1-1	lnc-RP11-210M15.2.1-1:1	XLOC_011546	linc-BCL2A1-3	ARNT2	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30chr15:80696692-80706455"	NA	inter
LNCA_21_P0006513	0.89226377	A	2.5058136	A	0.326793268198099	0	lncRNA	TCONS_00017237	NA	NA	NA	NA	XLOC_008058	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008058), lincRNA [TCONS_00017237]"	chrX:119127640-119127699	hs|Xq24	Agilent_HUMAN_G3V2	TCONS_00017237	TCONS_00017237	chrX	119127640	119127699	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49431_PI429285431	3.8926704	P	4.129738	P	0.848468144315236	0	lncRNA	53234-1_{1..2106}	hg19_lincRNAsTranscripts_TCONS_l2_00022664 range=chr5:177377264-177387112 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022664 range=chr5:177377264-177387112 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	177377264	177379369	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20"	NA	inter
CUST_7684_PI429285431	0.8836512	A	0.88307714	A	1.00039798724639	0	lncRNA	9318-1_{1..2905}	lnc-ZNF333-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF333-1:1	chr19	 14858599	 14861503	+	lnc-ZNF333-1	lnc-ZNF333-1:1	ENSG00000233422	ENST00000430444	EMR2	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_EMR2:range=chr19:14847048-148875685'pad=0,hg19_refFlat_EMR2:range=chr19:14847048-148875685'pad=0 3'pad=0 strand=- repeatMasking=none,-98.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_EMR3:range=chr19:14730245-147855825'pad=0,hg19_refFlat_EMR3:range=chr19:14730245-147855825'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chr19:14848599-14869558"	NA	inner
CUST_11563_PI429285431	5.0818787	P	5.4020433	P	0.800978487117945	0	lncRNA	13140-1_{1..398}	lnc-USP35-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP35-8:1	chr11	 79311266	 79311663	+	lnc-USP35-8	lnc-USP35-8:1	XLOC_009227	linc-C11orf82-6	NA	NA	NA	inter
CUST_28247_PI429285431	3.8863535	P	4.6012325	P	0.609256228507487	0	lncRNA	29883-1_{1..561}	n325540|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255309|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255309|-0.9819040|-0.2624707	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325540|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255309|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255309|-0.9819040|-0.2624707	chr17	 67104073	 67104633	+	NA	NA	NA	NA	ABCA6	NA	chr17:67094073-67115014	inner
CUST_11482_PI429285431	3.1396685	P	3.227155	P	0.941161036365967	0	lncRNA	13050-1_{1..2051}	lnc-HS3ST3A1-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HS3ST3A1-4:5	chr17	 13681282	 13683332	-	lnc-HS3ST3A1-4	lnc-HS3ST3A1-4:5	XLOC_012393	linc-HS3ST3A1-1	NA	NA	NA	inter
LNCA_21_P0008520	4.41908	P	4.3748193	P	1.03115463518093	0	lncRNA	TCONS_00023036	NA	NA	NA	NA	XLOC_010908	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010908), lincRNA [TCONS_00023036]"	chr14:93358182-93359620	hs|14q32.12	Agilent_HUMAN_G3V2	TCONS_00023036	TCONS_00023036	chr14	 93358182	 93359620	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13059_PI429285431	4.431546	P	4.9286075	P	0.708548493214307	0	lncRNA	14686-1_{1..365}	lnc-SIK1-4:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIK1-4:10	chr21	 44896420	 44896784	-	lnc-SIK1-4	lnc-SIK1-4:10	XLOC_014105	linc-SIK1-2	NA	NA	NA	inter
LNCA_21_P0006567	0.8904364	A	0.89071697	A	0.999805542604841	0	lncRNA	ENST00000477014	NA	NA	NA	NA	TCEAL3	transcription elongation factor A (SII)-like 3	ENST00000477014	NA	GO:0006355|GO:0005634	"BROAD Institute lincRNA (XLOC_008037), lincRNA [TCONS_00017446]"	chrX:102883527-102883586	hs|Xq22.2	Agilent_HUMAN_G3V2	ENST00000477014	ENST00000477014	chrX	102883527	102883586	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19715_PI429285431	8.004016	P	8.384595	P	0.768129253758611	0	lncRNA	21372-1_{1..675}	lnc-TUBA1C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUBA1C-1:1	chr12	 49522419	 49523093	+	lnc-TUBA1C-1	lnc-TUBA1C-1:1	ENSG00000258017.1	RP11-386G11.10	TUBA1B	"hg19_refFlat_TUBA3D:range=chr2:132233773-1322404215'pad=0,hg19_refFlat_TUBA3D:range=chr2:132233773-1322404215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TUBA1A:range=chr12:49578793-495805145'pad=0,hg19_refFlat_TUBA1A:range=chr12:49578793-495805145'pad=0 3'pad=0 strand=- repeatMasking=none,-94.50;hg19_refFlat_TUBA4A:range=chr2:220115074-2201185805'pad=0,hg19_refFlat_TUBA4A:range=chr2:220115074-2201185805'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TUBA3C:range=chr13:19748003-197558875'pad=0,hg19_refFlat_TUBA3C:range=chr13:19748003-197558875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TUBA1B:range=chr12:49521741-495250835'pad=0,hg19_refFlat_TUBA1B:range=chr12:49521741-495250835'pad=0 3'pad=0 strand=- repeatMasking=none,-94.50;hg19_refFlat_TUBA3E:range=chr2:130949404-1309559335'pad=0,hg19_refFlat_TUBA3E:range=chr2:130949404-1309559335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TUBA1C:range=chr12:49658965-496670105'pad=0,hg19_refFlat_TUBA1C:range=chr12:49658965-496670105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_TUBA1A:range=chr12:49578793-495827625'pad=0,hg19_refFlat_TUBA1A:range=chr12:49578793-495827625'pad=0 3'pad=0 strand=- repeatMasking=none,-94.50;hg19_refFlat_TUBA1A:range=chr12:49578793-495822025'pad=0,hg19_refFlat_TUBA1A:range=chr12:49578793-495822025'pad=0 3'pad=0 strand=- repeatMasking=none,-94.50chr12:49521565-49525304"	NA	inner
CUST_39516_PI429285431	7.4327517	P	7.61381	P	0.882055720181373	0	lncRNA	40462-1_{1..504}	n387317|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011cby.1||-1.0701600|-0.1372010	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387317|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011cby.1||-1.0701600|-0.1372010	chr4	 77507292	 77507795	+	NA	NA	NA	NA	SHROOM3	NA	chr4:77497292-77576507	inner
LNCA_21_P0002159	5.6220827	P	5.895703	P	0.827241059702312	0	lncRNA	TCONS_00003548	NA	NA	NA	NA	XLOC_001320	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001320), lincRNA [TCONS_00003548]"	chr2:2875369-2875428	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00003548	TCONS_00003548	chr2	  2875369	  2875428	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34898_PI429285431	1.1493415	A	1.9056814	A	0.59199631473341	0	lncRNA	36323-1_{1..3000}	n341814|AK126935|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4293|NULL|0.1625110|-0.2884139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341814|AK126935|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4293|NULL|0.1625110|-0.2884139	chr9	140934954	140937953	-	NA	NA	NA	NA	CACNA1B	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr9:140924954-140949523"	NA	inner
CUST_5203_PI429285431	0.89268947	A	0.9395551	A	0.968037183923063	0	lncRNA	5144-1_{1..3000}	"transcript_id ""ENST00000568092.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568092.1"" | genecode_v17"	chr15	 62567054	 62570053	+	ENSG00000261296.1	ENST00000568092.1	RP11-299H22.6	RP11-299H22.6-001	NA	NA	NA	inter
CUST_44950_PI429285431	0.88850695	A	0.90175843	A	0.99085682932703	0	lncRNA	49461-1_{1..1783}	"gi|158262018|ref|NR_003952.1| Homo sapiens zinc finger protein 479 pseudogene (LOC643955), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|158262018|ref|NR_003952.1| Homo sapiens zinc finger protein 479 pseudogene (LOC643955), non-coding RNA"	Chr7	 62751665	 62753447	-	643955	NR_003952.1	NA	NA	NA	NA	NA	inter
CUST_41887_PI429285431	0.8955481	A	0.90214854	A	0.995435373343308	0	lncRNA	43576-1_{1..102}	ENST00000577744 ncrna:miRNA chromosome:GRCh37:12:69978502:69978603:-1 gene:ENSG00000264405 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577744 ncrna:miRNA chromosome:GRCh37:12:69978502:69978603:-1 gene:ENSG00000264405 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 69978502	 69978603	-	ENSG00000264405	ENST00000577744	NA	NA	CCT2	NA	chr12:69979208-69988603	inter
CUST_20616_PI429285431	4.756319	P	4.686943	P	1.04926275430615	0	lncRNA	22255-1_{1..348}	lnc-TMEM63A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM63A-1:1	chr1	226034181	226034528	-	lnc-TMEM63A-1	lnc-TMEM63A-1:1	ENSG00000242861.1	RP11-285F7.2	EPHX1	NA	chr1:226024181-226033264	inner
CUST_25858_PI429285431	7.4284463	P	7.3021555	P	1.09148386222936	0	lncRNA	27380-1_{1..1044}	lnc-IDS-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IDS-1:13	chrX	148614417	148615460	-	lnc-IDS-1	lnc-IDS-1:13	ENSG00000241489.2	AF011889.5	CXorf40A	NA	chrX:148622519-148624449	inter
CUST_42106_PI429285431	9.170492	P	9.173697	P	0.997780929072707	0	lncRNA	44064-1_{1..77}	ENST00000584920 ncrna:miRNA chromosome:GRCh37:20:18451259:18451335:1 gene:ENSG00000265137 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584920 ncrna:miRNA chromosome:GRCh37:20:18451259:18451335:1 gene:ENSG00000265137 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 18451259	 18451335	+	ENSG00000265137	ENST00000584920	NA	NA	POLR3F	NA	chr20:18441259-18461335	inner
LNCA_21_P0008217	0.90693635	A	0.92107785	A	0.990245743544515	0	lncRNA	TCONS_00022118	NA	NA	NA	NA	XLOC_010728	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010728), lincRNA [TCONS_00022118]"	chr13:112813994-112810029	hs|13q34	Agilent_HUMAN_G3V2	TCONS_00022118	TCONS_00022118	chr13	112810029	112813994	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1907_PI429285431	0.9012114	A	0.9130968	A	0.991795510555334	0	lncRNA	1898-1_{1..512}	"transcript_id ""ENST00000510922.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510922.1"" | genecode_v17"	chr4	138611631	138612142	-	ENSG00000250777.1	ENST00000510922.1	RP13-884E18.4	RP13-884E18.4-001	NA	NA	NA	inter
CUST_44899_PI429285431	0.9168337	A	1.6605281	A	0.597208084207121	0	lncRNA	49419-2_{3001..3721}	"gi|337298381|ref|NR_038965.1| Homo sapiens uncharacterized LOC100506497 (LOC100506497), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|337298381|ref|NR_038965.1| Homo sapiens uncharacterized LOC100506497 (LOC100506497), non-coding RNA"	Chr7	 29022583	 29023303	+	100506497	NR_038965.1	NA	NA	NA	NA	NA	inter
CUST_8953_PI429285431	2.7148714	A	3.1800451	A	0.724383856453027	0	lncRNA	10487-1_{1..1699}	lnc-NKD2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NKD2-2:1	chr5	  1005157	  1006855	+	lnc-NKD2-2	lnc-NKD2-2:1	ENSG00000249622	AC116351.3	NKD2	NA	chr5:1009168-1016734	inter
CUST_16873_PI429285431	2.4786847	A	3.2522907	P	0.584953561025151	0	lncRNA	18580-1_{1..1080}	lnc-C15orf2-9:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-9:10	chr15	 24525165	 24526244	+	lnc-C15orf2-9	lnc-C15orf2-9:10	XLOC_011174	linc-C15orf2-8	NA	NA	NA	inter
CUST_51904_PI429285431	0.9002602	A	1.3832015	A	0.715517372203645	0	lncRNA	55448-1_{1..526}	hg19_lincRNAsTranscripts_TCONS_l2_00012754 range=chr19:57158855-57166848 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012754 range=chr19:57158855-57166848 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 57158855	 57159380	+	NA	NA	NA	NA	LOC147670	NA	chr19:57154527-57168614	inner
LNCA_21_P0004322	0.9000269	A	0.910022	A	0.993095868403154	0	lncRNA	TCONS_00010155	NA	NA	NA	NA	XLOC_004621	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004621), lincRNA [TCONS_00010155]"	chr5:159012833-159012892	hs|5q33.3	Agilent_HUMAN_G3V2	TCONS_00010155	TCONS_00010155	chr5	159012833	159012892	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50924_PI429285431	13.307989	P	12.11969	P	2.27883899718307	0	lncRNA	54565-1_{1..325}	hg19_lincRNAsTranscripts_TCONS_l2_00005546 range=chr12:17144476-17144926 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005546 range=chr12:17144476-17144926 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 17144476	 17144800	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33912_PI429285431	4.933055	P	4.9222975	P	1.00748439994662	0	lncRNA	35454-1_{1..834}	n340705|CR600824|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3168|NULL|1.3459300|-0.1190873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340705|CR600824|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3168|NULL|1.3459300|-0.1190873	chr17	 43238060	 43238893	-	NA	NA	NA	NA	HEXIM2	NA	chr17:43238264-43247406	inner
CUST_15566_PI429285431	4.113232	P	4.2460012	P	0.912079066770686	0	lncRNA	17251-1_{1..247}	lnc-RP4-604K5.1.1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP4-604K5.1.1-5:3	chr1	 87837252	 87837498	-	lnc-RP4-604K5.1.1-5	lnc-RP4-604K5.1.1-5:3	XLOC_000901	linc-SEP15-3	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30"	NA	inter
CUST_22575_PI429285431	3.303363	A	3.8692021	P	0.675562381769911	0	lncRNA	24162-1_{1..574}	lnc-RGS5-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RGS5-1:10	chr1	163291412	163291985	-	lnc-RGS5-1	lnc-RGS5-1:10	ENSG00000232995.2	RP11-267N12.3	NUF2	NA	chr1:163291723-163301531	inner
CUST_36505_PI429285431	0.882543	A	0.95071393	A	0.953846532451515	0	lncRNA	37704-1_{1..1100}	n345005|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_554|NULL|-1.3237800|-0.3582768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345005|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_554|NULL|-1.3237800|-0.3582768	chr8	 75307391	 75308490	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51729_PI429285431	0.88688	A	0.89494276	A	0.994426908255389	0	lncRNA	55283-3_{6001..7748}	hg19_lincRNAsTranscripts_TCONS_l2_00011792 range=chr18:14857495-14909914 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011792 range=chr18:14857495-14909914 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr18	 14863495	 14865242	+	NA	NA	NA	NA	ANKRD30B	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50chr18:14847495-14852737"	NA	inter
LNCA_21_P0012199	2.6236572	A	3.2024715	P	0.669513801039924	0	lncRNA	TCONS_l2_00017195	NA	NA	NA	NA	XLOC_l2_009184	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009184), lincRNA [TCONS_l2_00017195]"	chr21:30368315-30368256	hs|21q21.3	Agilent_HUMAN_G3V2	TCONS_l2_00017195	TCONS_l2_00017195	chr21	 30368256	 30368315	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34397_PI429285431	0.8949055	A	0.88956547	A	1.00370828547832	0	lncRNA	35880-1_{1..2130}	n341268|BC027586|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3736|NULL|-0.9288900|-0.2766902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341268|BC027586|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3736|NULL|-0.9288900|-0.2766902	chr7	 87105080	 87107209	+	NA	NA	NA	NA	ABCB4	NA	chr7:87095080-87105019	inter
LNCA_21_P0014376	1.4457158	A	1.8593605	A	0.750724410792132	0	lncRNA	XR_109505	XR_109505	XR_109505	NA	Hs.664213	LOC100506561	uncharacterized LOC100506561	NA	THC2502013	NA	"PREDICTED: Homo sapiens hypothetical LOC100506561 (LOC100506561), miscRNA [XR_109505]"	chr19:58770653-58770594	hs|19q13.43	Agilent_HUMAN_G3V2	XR_109505	XR_109505	chr19	 58770594	 58770653	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47858_PI429285431	7.831171	P	6.7888284	P	2.05956919927825	0	lncRNA	51761-2_{3001..6000}	"gi|410171124|ref|XR_171157.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171124|ref|XR_171157.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	XR_171157.1	NA	NA	NA	NA	NA	Unknown
CUST_33323_PI429285431	0.8857622	A	1.0772619	A	0.875694951885048	0	lncRNA	34905-1_{1..591}	n340039|AF085843|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2494|NULL|-1.2736100|-0.5159566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340039|AF085843|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2494|NULL|-1.2736100|-0.5159566	chr10	 61076757	 61077347	+	NA	NA	NA	NA	FAM13C	NA	chr10:61066757-61087339	inner
CUST_21739_PI429285431	1.0323642	A	0.88844824	A	1.10490012018505	0	lncRNA	23349-1_{1..572}	lnc-SPAM1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SPAM1-2:2	chr7	123634982	123635553	+	lnc-SPAM1-2	lnc-SPAM1-2:2	ENSG00000241345.1	RP4-630C24.3	NA	NA	NA	inter
LNCA_21_P0001471	3.3831594	P	2.6463194	A	1.66652158091166	0	lncRNA	TCONS_00001406	NA	NA	NA	NA	XLOC_000721	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000721), lincRNA [TCONS_00001406]"	chr1:16126629-16123409	hs|1p36.21	Agilent_HUMAN_G3V2	TCONS_00001406	TCONS_00001406	chr1	 16123409	 16126629	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011739	4.130498	P	4.377791	P	0.842475711945749	0	lncRNA	TCONS_l2_00013034	NA	NA	NA	NA	XLOC_l2_007013	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007013), lincRNA [TCONS_l2_00013034]"	chr19:35035891-35035832	hs|19q13.11	Agilent_HUMAN_G3V2	TCONS_l2_00013034	TCONS_l2_00013034	chr19	 35035832	 35035891	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51804_PI429285431	1.2614249	A	1.8159379	A	0.680886861452703	0	lncRNA	55355-1_{1..830}	hg19_lincRNAsTranscripts_TCONS_l2_00012394 range=chr19:21676299-21677400 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012394 range=chr19:21676299-21677400 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 21676299	 21677128	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31856_PI429285431	0.88784736	A	0.8958183	A	0.994490200345426	0	lncRNA	33589-1_{1..1366}	n338405|BC037800|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|802|NULL|-1.1518500|-0.3689118	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338405|BC037800|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|802|NULL|-1.1518500|-0.3689118	chr1	181774572	181775937	+	NA	NA	NA	NA	CACNA1E	NA	chr1:181764572-181775920	inner
LNCA_21_P0002929	1.0203093	A	0.8882119	A	1.09588574997573	0	lncRNA	TCONS_00005946	NA	NA	NA	NA	XLOC_002577	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002577), lincRNA [TCONS_00005946]"	chr3:12512531-12515175	hs|3p25.2	Agilent_HUMAN_G3V2	TCONS_00005946	TCONS_00005946	chr3	 12512531	 12515175	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4913_PI429285431	2.4808316	A	3.1904476	P	0.611482874677625	0	lncRNA	4855-1_{1..383}	"transcript_id ""ENST00000556144.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556144.1"" | genecode_v17"	chr14	 82200956	 82201338	-	ENSG00000258718.1	ENST00000556144.1	RP11-226P1.2	RP11-226P1.2-001	NA	NA	NA	inter
CUST_36848_PI429285431	1.9592446	A	1.8319995	A	1.09220608528478	0	lncRNA	38013-1_{1..1162}	n345321|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_870|NULL|-1.5095100|-0.2606846	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345321|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_870|NULL|-1.5095100|-0.2606846	chr15	 96888276	 96889437	-	NA	NA	NA	NA	NR2F2	NA	chr15:96878276-96883492	inter
LNCA_21_P0005545	5.80724	P	6.0196056	P	0.863120803436602	0	lncRNA	TCONS_00014012	NA	NA	NA	NA	XLOC_006659	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006659), lincRNA [TCONS_00014012]"	chr7:153406797-153406738	hs|7q36.2	Agilent_HUMAN_G3V2	TCONS_00014012	TCONS_00014012	chr7	153406738	153406797	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36886_PI429285431	0.89036036	A	1.0150782	A	0.917183406935263	0	lncRNA	38045-1_{1..644}	n345358|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_907|NULL|-1.3469700|-0.3894881	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345358|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_907|NULL|-1.3469700|-0.3894881	chr18	 33466615	 33467258	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002015	3.9388027	P	3.8915286	P	1.03331068943048	0	lncRNA	ENST00000454489	NA	NA	NA	NA	XLOC_001989	NA	ENST00000454489	THC2713685	NA	"BROAD Institute lincRNA (XLOC_001989), lincRNA [TCONS_00003206]"	chr2:11529194-11529135	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000454489	ENST00000454489	chr2	 11529135	 11529194	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48534_PI429285431	0.8969509	A	1.300253	A	0.756125649531429	0	lncRNA	52383-2_{3001..4235}	hg19_lincRNAsTranscripts_TCONS_l2_00013840 range=chr2:98287859-98319937 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013840 range=chr2:98287859-98319937 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 98290859	 98292093	+	NA	NA	NA	NA	ACTR1B	NA	chr2:98277859-98280561	inter
CUST_4288_PI429285431	1.2177601	A	1.9908956	A	0.585144360553679	0	lncRNA	4243-1_{1..600}	"transcript_id ""ENST00000360528.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000360528.2"" | genecode_v17"	chr12	 65411248	 65411847	+	ENSG00000198671.2	ENST00000360528.2	RP11-168J19.2	RP11-168J19.2-001	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50"	NA	inter
CUST_51571_PI429285431	0.87956107	A	0.87896097	A	1.00041604414542	0	lncRNA	55136-1_{1..369}	hg19_lincRNAsTranscripts_TCONS_l2_00010601 range=chr17:19495076-19499412 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010601 range=chr17:19495076-19499412 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 19495076	 19495444	+	NA	NA	NA	NA	ALDH3A2	NA	chr17:19506587-19509412	inter
CUST_44164_PI429285431	9.59188	P	9.463857	P	1.09279516072343	0	lncRNA	48824-1_{1..3000}	"gi|354459374|ref|NR_036627.2| Homo sapiens RNA binding motif protein 5 (RBM5), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|354459374|ref|NR_036627.2| Homo sapiens RNA binding motif protein 5 (RBM5), transcript variant 2, non-coding RNA"	Chr3	 50126341	 50129340	+	10181	NR_036627.2	NA	NA	NA	NA	NA	inter
CUST_29685_PI429285431	2.912911	A	2.7094588	A	1.151450346698	0	lncRNA	31447-1_{1..311}	n333341|AY255600|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085529|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085529|2.3323700|-0.0059491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333341|AY255600|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085529|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085529|2.3323700|-0.0059491	chr11	 67219605	 67219915	-	NA	NA	NA	NA	CABP4	NA	chr11:67222818-67229245	inner
CUST_29069_PI429285431	7.7294	P	7.7274528	P	1.00135060743981	0	lncRNA	30798-1_{1..399}	n326560|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026986|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026986|-1.0658700|-0.3399320	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326560|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026986|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026986|-1.0658700|-0.3399320	chr1	 76279963	 76280361	+	NA	NA	NA	NA	MSH4	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80chr1:76269963-76314501"	NA	inner
CUST_8619_PI429285431	1.1292871	A	1.9097614	A	0.582175365965998	0	lncRNA	10172-1_{1..1457}	lnc-LOXHD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LOXHD1-1:1	chr18	 43916080	 43917536	-	lnc-LOXHD1-1	lnc-LOXHD1-1:1	ENSG00000248078	AC015959.1	RNF165	NA	chr18:43914187-43927171	inner
CUST_20361_PI429285431	0.88431543	A	0.88460493	A	0.999799354023325	0	lncRNA	22002-1_{1..579}	lnc-NFE2L2-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-NFE2L2-5:4	chr2	177627228	177627806	-	lnc-NFE2L2-5	lnc-NFE2L2-5:4	ENSG00000230552.1	AC092162.1	NA	NA	NA	inter
CUST_23852_PI429285431	8.41158	P	8.529662	P	0.921411813442284	0	lncRNA	25415-1_{1..743}	lnc-SERAC1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SERAC1-3:2	chr6	158295965	158296707	-	lnc-SERAC1-3	lnc-SERAC1-3:2	ENSG00000229502.1	RP11-52J3.2	SNX9	"hg19_refFlat_SNX9:range=chr6:158244467-1583638705'pad=0,hg19_refFlat_SNX9:range=chr6:158244467-1583638705'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80chr6:158285965-158306242"	NA	inner
LNCA_21_P0004876	0.88928485	A	0.8885989	A	1.00047557735958	0	lncRNA	TCONS_00011801	NA	NA	NA	NA	XLOC_005277	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005277), lincRNA [TCONS_00011801]"	chr6:37470148-37470207	hs|6p21.2	Agilent_HUMAN_G3V2	TCONS_00011801	TCONS_00011801	chr6	 37470148	 37470207	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12494_PI429285431	8.268437	P	8.086134	P	1.13469377237819	0	lncRNA	14106-1_{1..568}	lnc-NBAS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NBAS-1:1	chr2	 15820395	 15820962	-	lnc-NBAS-1	lnc-NBAS-1:1	XLOC_001994	linc-NBAS-6	NA	NA	NA	inter
CUST_33121_PI429285431	2.6095695	A	2.7141743	A	0.930059680611724	0	lncRNA	34719-1_{1..1992}	n339809|BC019322|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2256|NULL|-0.5447930|-0.1603805	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339809|BC019322|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2256|NULL|-0.5447930|-0.1603805	chr18	 20769093	 20771084	-	NA	NA	NA	NA	CABLES1	NA	chr18:20759093-20781065	inner
CUST_25638_PI429285431	0.89832574	A	0.88859284	A	1.00676913995343	0	lncRNA	27168-1_{1..619}	lnc-MIER3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MIER3-2:1	chr5	 56157901	 56158519	-	lnc-MIER3-2	lnc-MIER3-2:1	ENSG00000237705.1	AC008937.2	MAP3K1	"hg19_refFlat_MAP3K1:range=chr5:56111401-561895075'pad=0,hg19_refFlat_MAP3K1:range=chr5:56111401-561895075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50chr5:56147901-56167991"	NA	inner
CUST_13353_PI429285431	0.88645315	A	0.8868828	A	0.999702233655073	0	lncRNA	14990-1_{1..540}	lnc-C2orf27A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C2orf27A-3:1	chr2	132796337	132796876	+	lnc-C2orf27A-3	lnc-C2orf27A-3:1	XLOC_001679	linc-GPR39-2	NA	NA	NA	inter
CUST_47861_PI429285431	0.899419	A	0.9107968	A	0.992144526779837	0	lncRNA	51763-1_{1..1024}	"gi|410171142|ref|XR_171167.1| PREDICTED: Homo sapiens chromosome 1 open reading frame 191 (C1orf191), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171142|ref|XR_171167.1| PREDICTED: Homo sapiens chromosome 1 open reading frame 191 (C1orf191), misc_RNA"	NA	NA	NA	NA	NA	XR_171167.1	NA	NA	NA	NA	NA	Unknown
CUST_3315_PI429285431	0.99790174	A	0.90774536	A	1.06448556042698	0	lncRNA	3294-1_{1..491}	"transcript_id ""ENST00000521490.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521490.1"" | genecode_v17"	chr8	132142635	132143125	-	ENSG00000253407.1	ENST00000521490.1	RP11-381I15.1	RP11-381I15.1-001	NA	NA	NA	inter
CUST_44296_PI429285431	11.01286	P	11.78509	P	0.585511738631849	0	lncRNA	48929-1_{1..1421}	"gi|298231216|ref|NR_033723.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 19 (DNAJC19), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|298231216|ref|NR_033723.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 19 (DNAJC19), transcript variant 5, non-coding RNA"	Chr3	180701497	180702917	-	131118	NR_033723.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10"	NA	inter
CUST_7689_PI429285431	1.1085255	A	1.1473405	A	0.973454194355672	0	lncRNA	9322-1_{1..567}	lnc-HAND1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HAND1-2:1	chr5	153825298	153825864	-	lnc-HAND1-2	lnc-HAND1-2:1	ENSG00000245275	CTB-157D17.1	SAP30L	NA	chr5:153825517-153835410	inter
CUST_42586_PI429285431	0.8870141	A	0.883834	A	1.00220670855424	0	lncRNA	45431-1_{1..123}	ENST00000365579 ncrna:snoRNA chromosome:GRCh37:4:14692334:14692456:1 gene:ENSG00000202449 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365579 ncrna:snoRNA chromosome:GRCh37:4:14692334:14692456:1 gene:ENSG00000202449 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	 14692334	 14692456	+	ENSG00000202449	ENST00000365579	NA	NA	NA	NA	NA	inter
CUST_345_PI429201921	0.8861864	A	0.88714147	A	0.999338214998616	0	lncRNA	225-3_{6001..8248}	TC01006249.hg.1	TCONS_l2_00002826-XLOC_l2_001407 // Broad TUCP // linc-SMYD3 chr1:-:246679340-246687589 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:246679340-246687589	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00002826-XLOC_l2_001407	linc-SMYD3	chr1	246679340	246687589	-	NA	NA	NA	NA	SSBP3	NA	chr1:54871929-54872092	Unknown
LNCA_21_P0001935	9.720891	P	9.935005	P	0.862075422179232	0	lncRNA	XR_133321	XR_133321	XR_133321	NA	Hs.567958	LOC100505695	uncharacterized LOC100505695	ENST00000429172	THC2706484	NA	"PREDICTED: Homo sapiens hypothetical LOC100505695 (LOC100505695), miscRNA [XR_133321]"	chr2:171634193-171634252	hs|2q31.1	Agilent_HUMAN_G3V2	XR_133321	XR_133321	chr2	171634193	171634252	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51617_PI429285431	0.8857906	A	1.8734175	A	0.504306630942736	0	lncRNA	55186-1_{1..381}	hg19_lincRNAsTranscripts_TCONS_l2_00011222 range=chr17:40180996-40186358 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011222 range=chr17:40180996-40186358 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 40180996	 40181376	-	NA	NA	NA	NA	ZNF385C	NA	chr17:40177594-40190044	inner
CUST_26436_PI429285431	0.8942665	A	0.9036789	A	0.993497057722278	0	lncRNA	27943-1_{1..559}	lnc-LRRC18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC18-1:1	chr10	 50143222	 50143780	-	lnc-LRRC18-1	lnc-LRRC18-1:1	ENSG00000241577.1	RP11-523O18.7	WDFY4	NA	chr10:50133222-50153258	inner
CUST_37813_PI429285431	6.1537423	P	6.339566	P	0.879146987734281	0	lncRNA	38904-1_{1..247}	n346326|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1876|NULL|-1.3464000|-0.2846861	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346326|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1876|NULL|-1.3464000|-0.2846861	chr17	 28934569	 28934815	-	NA	NA	NA	NA	NA	"hg19_refFlat_SMURF2:range=chr17:62541966-626579985'pad=0,hg19_refFlat_SMURF2:range=chr17:62541966-626579985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50"	NA	inter
CUST_31752_PI429285431	3.894034	P	4.0487795	P	0.898290822760432	0	lncRNA	33492-2_{3001..3257}	n338288|BC010117|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|681|NULL|-0.6074120|-0.2311403	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338288|BC010117|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|681|NULL|-0.6074120|-0.2311403	chr1	156614457	156614713	-	NA	NA	NA	NA	BCAN	NA	chr1:156611740-156624679	inner
LNCA_21_P0010802	6.91973	P	7.0196905	P	0.933058537689428	0	lncRNA	TCONS_l2_00002856	NA	NA	NA	NA	XLOC_l2_001448	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001448), lincRNA [TCONS_l2_00002856]"	chr10:5668390-5668449	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_l2_00002856	TCONS_l2_00002856	chr10	  5668390	  5668449	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22348_PI429285431	0.897252	A	0.9072775	A	0.993074942430951	0	lncRNA	23942-1_{1..302}	lnc-RECQL5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RECQL5-2:2	chr17	 73680057	 73680358	-	lnc-RECQL5-2	lnc-RECQL5-2:2	ENSG00000264270.1	RP11-474I11.7	SAP30BP	NA	chr17:73670057-73690122	inner
LNCA_21_P0007206	3.245153	P	3.6128135	P	0.775038294200224	0	lncRNA	TCONS_00019294	NA	NA	NA	NA	XLOC_009122	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009122), lincRNA [TCONS_00019294]"	chr11:45602155-45602214	hs|11p11.2	Agilent_HUMAN_G3V2	TCONS_00019294	TCONS_00019294	chr11	 45602155	 45602214	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45562_PI429285431	1.118949	A	0.92399544	A	1.1446873128014	0	lncRNA	49961-1_{1..2799}	"gi|214831164|ref|NR_024524.1| Homo sapiens cyclin Y-like pseudogene (LOC100129055), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|214831164|ref|NR_024524.1| Homo sapiens cyclin Y-like pseudogene (LOC100129055), non-coding RNA"	Chr10	 38464599	 38467397	+	100129055	NR_024524.1	NA	NA	NA	NA	NA	inter
CUST_1721_PI429285431	1.1694708	A	0.9261143	A	1.18374349688338	0	lncRNA	1706-1_{1..600}	"transcript_id ""ENST00000509666.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509666.1"" | genecode_v17"	chr4	 27969345	 27969944	-	ENSG00000251410.1	ENST00000509666.1	AC007106.1	AC007106.1-001	NA	NA	NA	inter
CUST_31013_PI429285431	5.9171834	P	6.39293	P	0.71909455961395	0	lncRNA	32801-1_{1..274}	n337211|BC109236|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386504|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386504|-0.8481000|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337211|BC109236|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000386504|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000386504|-0.8481000|-1.0000000	chr9	131772365	131772638	+	NA	NA	NA	NA	NUP188	"hg19_refFlat_SH3GLB2:range=chr9:131770963-1317904335'pad=0,hg19_refFlat_SH3GLB2:range=chr9:131770963-1317904335'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70chr9:131762365-131769374"	NA	inner
CUST_4526_PI429285431	5.546104	P	5.8932037	P	0.78616296107703	0	lncRNA	4474-1_{1..587}	"transcript_id ""ENST00000546264.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546264.1"" | genecode_v17"	chr12	131295151	131295737	+	ENSG00000256250.1	ENST00000546264.1	RP11-989F5.1	RP11-989F5.1-001	STX2	NA	chr12:131285151-131306983	inner
CUST_7972_PI429285431	0.8958549	A	1.0303875	A	0.910964917463159	0	lncRNA	9584-1_{1..1244}	lnc-MARCKS-5:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MARCKS-5:11	chr6	114379795	114381038	+	lnc-MARCKS-5	lnc-MARCKS-5:11	ENSG00000228624	RP3-399L15.3	HS3ST5	NA	chr6:114376750-114384041	inner
CUST_43914_PI429285431	5.1467648	P	5.8658776	P	0.607470897767383	0	lncRNA	48627-1_{1..1463}	"gi|387527982|ref|NR_048564.1| Homo sapiens interleukin 1 receptor, type II (IL1R2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387527982|ref|NR_048564.1| Homo sapiens interleukin 1 receptor, type II (IL1R2), transcript variant 2, non-coding RNA"	Chr2	102615424	102616886	+	7850	NR_048564.1	NA	NA	NA	NA	NA	inter
CUST_2542_PI429285431	1.8036013	A	1.5233322	A	1.21442138431966	0	lncRNA	2530-1_{1..548}	"transcript_id ""ENST00000605281.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605281.1"" | genecode_v17"	chr6	 53214956	 53215503	+	ENSG00000271367.1	ENST00000605281.1	RP3-483K16.4	RP3-483K16.4-001	ELOVL5	NA	chr6:53204956-53213977	inter
CUST_45620_PI429285431	6.931054	P	5.551186	P	2.60244558811796	0	lncRNA	50004-1_{1..1869}	"gi|209364551|ref|NR_024203.1| Homo sapiens ecdysoneless homolog (Drosophila) (ECD), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209364551|ref|NR_024203.1| Homo sapiens ecdysoneless homolog (Drosophila) (ECD), transcript variant 4, non-coding RNA"	Chr10	 74894282	 74896150	-	11319	NR_024203.1	NA	NA	NA	NA	NA	inter
CUST_14488_PI429285431	8.530867	P	8.322402	P	1.15545814423014	0	lncRNA	16154-1_{1..694}	lnc-HES1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HES1-2:6	chr3	193809296	193809989	+	lnc-HES1-2	lnc-HES1-2:6	XLOC_002975	linc-HES1-1	NA	NA	NA	inter
CUST_34446_PI429285431	0.9125847	A	1.1494569	A	0.84858306943706	0	lncRNA	35923-1_{1..3000}	n341321|BX648653|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3790|NULL|-1.1317500|-0.3408040	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341321|BX648653|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3790|NULL|-1.1317500|-0.3408040	chr7	131178722	131181721	-	NA	NA	NA	NA	MKLN1	NA	chr7:131168722-131181398	inner
CUST_6161_PI429285431	1.0764132	A	1.1073396	A	0.97879158279543	0	lncRNA	6087-1_{1..508}	"transcript_id ""ENST00000593577.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593577.1"" | genecode_v17"	chr18	 39096384	 39096891	-	ENSG00000267313.2	ENST00000593577.1	RP11-142I20.1	RP11-142I20.1-004	NA	NA	NA	inter
LNCA_21_P0009283	0.9063292	A	0.9201663	A	0.990454701500336	0	lncRNA	TCONS_00025512	NA	NA	NA	NA	XLOC_012324	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012324), lincRNA [TCONS_00025512]"	chr17:76360986-76361045	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_00025512	TCONS_00025512	chr17	 76360986	 76361045	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34498_PI429285431	1.8702822	A	2.2261288	A	0.781410962227569	0	lncRNA	35965-1_{1..2311}	n341376|BC041933|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3845|NULL|-0.3369390|-0.4062688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341376|BC041933|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3845|NULL|-0.3369390|-0.4062688	chr7	157026560	157028870	+	NA	NA	NA	NA	UBE3C	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-34.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90chr7:157016560-157038829"	NA	inner
CUST_5350_PI429285431	0.89503884	A	1.1207696	A	0.855161755807999	0	lncRNA	5288-1_{1..454}	"transcript_id ""ENST00000559394.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559394.1"" | genecode_v17"	chr15	 97815407	 97815860	-	ENSG00000259403.1	ENST00000559394.1	RP11-315L6.1	RP11-315L6.1-001	NA	NA	NA	inter
CUST_31045_PI429285431	1.0373111	A	2.0397763	A	0.499146356323241	0	lncRNA	32835-1_{1..281}	n337266|BC127858|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389477|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389477|-1.2075500|-0.2001152	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337266|BC127858|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389477|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389477|-1.2075500|-0.2001152	chr22	 21311691	 21311971	-	NA	NA	NA	NA	CRKL	NA	chr22:21301691-21308037	inter
CUST_27997_PI429285431	0.8938755	A	0.89311045	A	1.00053043288028	0	lncRNA	29606-1_{1..565}	n325251|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328658|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328658|-0.9657590|-0.2700122	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325251|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328658|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328658|-0.9657590|-0.2700122	chr2	 74998782	 74999346	+	NA	NA	NA	NA	HK2	NA	chr2:74988782-75023429	inter
CUST_47134_PI429285431	10.325428	P	9.966942	P	1.28207974502328	0	lncRNA	51215-1_{1..1659}	"gi|396941679|ref|NR_073048.1| Homo sapiens death effector domain containing 2 (DEDD2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|396941679|ref|NR_073048.1| Homo sapiens death effector domain containing 2 (DEDD2), transcript variant 6, non-coding RNA"	Chr19	 42702745	 42704403	-	162989	NR_073048.1	NA	NA	NA	NA	NA	inter
CUST_3690_PI429285431	1.0445753	A	0.9103799	A	1.09748057133462	0	lncRNA	3658-1_{1..599}	"transcript_id ""ENST00000454672.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454672.1"" | genecode_v17"	chr10	 48324788	 48325386	-	ENSG00000226044.1	ENST00000454672.1	RP11-463P17.1	RP11-463P17.1-001	NA	NA	NA	inter
CUST_18945_PI429285431	5.1610327	P	5.7629623	P	0.658872126435747	0	lncRNA	20636-1_{1..1854}	lnc-PDE6B-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PDE6B-1:8	chr4	   578068	   579921	+	lnc-PDE6B-1	lnc-PDE6B-1:8	ENSG00000256961	AC116565.1	NA	NA	NA	inter
CUST_8738_PI429285431	10.806481	P	10.4476	P	1.28243081771613	0	lncRNA	10281-1_{1..500}	lnc-HES5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HES5-1:3	chr1	  2485540	  2486039	-	lnc-HES5-1	lnc-HES5-1:3	ENSG00000238164	XLOC_000678	TNFRSF14	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90chr1:2487805-2495268"	NA	inter
LNCA_21_P0005032	0.9006952	A	0.9111533	A	0.992777208117897	0	lncRNA	THC2666473	NA	NA	NA	NA	XLOC_005763	NA	NA	THC2666473	NA	"BROAD Institute lincRNA (XLOC_005763), lincRNA [TCONS_00012210]"	chr6:072053263-072053204	hs|6q13	Agilent_HUMAN_G3V2	THC2666473	THC2666473	chr6	 72053204	 72053263	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11890_PI429285431	0.9157357	A	0.9637052	A	0.967296779008343	0	lncRNA	13472-1_{1..1028}	lnc-CBLB-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLB-3:5	chr3	106146751	106147778	-	lnc-CBLB-3	lnc-CBLB-3:5	XLOC_003199	linc-CBLB-10	NA	NA	NA	inter
CUST_26771_PI429285431	5.6529007	P	4.2749987	P	2.59890157962708	0	lncRNA	28270-1_{1..444}	n323823|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080578|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080578|-0.3293820|-0.1588741	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323823|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080578|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080578|-0.3293820|-0.1588741	chrX	114863552	114863995	+	NA	NA	NA	NA	PLS3	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00chrX:114853552-114875637"	NA	inner
CUST_17908_PI429285431	10.907259	P	10.818991	P	1.06309313986042	0	lncRNA	19639-1_{1..383}	lnc-AC007405.7.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC007405.7.1-2:1	chr2	171627240	171627622	+	lnc-AC007405.7.1-2	lnc-AC007405.7.1-2:1	XLOC_001747	linc-GAD1-2	NA	NA	NA	inter
CUST_49895_PI429285431	3.2904592	P	3.4552162	P	0.892078763843384	0	lncRNA	53644-1_{1..1214}	hg19_lincRNAsTranscripts_TCONS_l2_00026706 range=chr7:76712919-76751220 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026706 range=chr7:76712919-76751220 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 76712919	 76714132	-	NA	NA	NA	NA	CCDC146	NA	chr7:76744671-76761220	inter
LNCA_21_P0002480	0.89374745	A	0.9011909	A	0.994853880495344	0	lncRNA	TCONS_00004359	NA	NA	NA	NA	XLOC_002236	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002236), lincRNA [TCONS_00004359]"	chr2:104955458-104955399	hs|2q12.1	Agilent_HUMAN_G3V2	TCONS_00004359	TCONS_00004359	chr2	104955399	104955458	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52039_PI429285431	2.0905132	A	1.036393	A	2.07645153612001	0	lncRNA	55569-1_{1..1445}	hg19_lincRNAsTranscripts_TCONS_l2_00017177 range=chr21:26757742-26803046 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017177 range=chr21:26757742-26803046 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 26757742	 26759186	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45340_PI429285431	3.6897025	P	3.3398843	A	1.27440002475503	0	lncRNA	49778-1_{1..2667}	"gi|385137125|ref|NR_047651.1| Homo sapiens uncharacterized LOC100289137 (LOC100289137), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137125|ref|NR_047651.1| Homo sapiens uncharacterized LOC100289137 (LOC100289137), non-coding RNA"	Chr9	 38540564	 38543230	-	100289137	NR_047651.1	NA	NA	NA	NA	NA	inter
CUST_14820_PI429285431	8.213313	P	8.248282	P	0.976052733545107	0	lncRNA	16480-1_{1..1997}	lnc-TMEM105-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM105-2:11	chr17	 79355677	 79357673	-	lnc-TMEM105-2	lnc-TMEM105-2:11	XLOC_012586	linc-TMEM105-1	LOC100130370	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60chr17:79352934-79357447"	NA	inter
CUST_36634_PI429285431	0.9019278	A	0.89854914	A	1.00234465306311	0	lncRNA	37827-1_{1..3000}	n345130|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_679|NULL|-1.3165200|-0.3125917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345130|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_679|NULL|-1.3165200|-0.3125917	chr11	122011860	122014859	+	NA	NA	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
LNCA_21_P0000946	6.10011	P	6.2637653	P	0.89276025126507	0	lncRNA	ENST00000452982	NA	NA	NA	NA	XLOC_000043	NA	ENST00000452982	NA	NA	"BROAD Institute lincRNA (XLOC_000043), lincRNA [TCONS_00000150]"	chr1:8270613-8274701	hs|1p36.23	Agilent_HUMAN_G3V2	ENST00000452982	ENST00000452982	chr1	  8270613	  8274701	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4376_PI429285431	0.9093119	A	0.91905516	A	0.99326924052047	0	lncRNA	4330-1_{1..1011}	"transcript_id ""ENST00000551075.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551075.1"" | genecode_v17"	chr12	 92295234	 92296244	+	ENSG00000257863.1	ENST00000551075.1	RP11-587P21.3	RP11-587P21.3-001	NA	NA	NA	inter
CUST_36551_PI429285431	1.0154129	A	0.8995247	A	1.08364198799604	0	lncRNA	37747-1_{1..945}	n345049|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_598|NULL|-1.2836000|-0.3021183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345049|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_598|NULL|-1.2836000|-0.3021183	chr9	 73143976	 73144920	+	NA	NA	NA	NA	TRPM3	NA	chr9:73149949-73155496	inter
CUST_24402_PI429285431	1.406252	A	1.2599778	A	1.10670767502438	0	lncRNA	25955-1_{1..517}	lnc-DRD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DRD2-1:1	chr11	113185052	113185568	-	lnc-DRD2-1	lnc-DRD2-1:1	ENSG00000255129.1	RP11-839D17.3	TTC12	NA	chr11:113185251-113195159	inter
LNCA_21_P0014888	2.5300646	A	3.095443	P	0.675778145516921	0	lncRNA	XR_132806	XR_132806	XR_132806	NA	NA	LOC100652787	uncharacterized LOC100652787	NA	THC2642479	NA	"PREDICTED: Homo sapiens hypothetical LOC100652787 (LOC100652787), miscRNA [XR_132806]"	chr11:122955534-122955593	hs|11q24.1	Agilent_HUMAN_G3V2	XR_132806	XR_132806	chr11	122955534	122955593	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32952_PI429285431	6.276718	P	6.5040545	P	0.854210478161018	0	lncRNA	34572-1_{1..2412}	n339627|BX647159|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2071|NULL|0.2251850|-0.2471671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339627|BX647159|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2071|NULL|0.2251850|-0.2471671	chr20	 30774279	 30776690	-	NA	NA	NA	NA	PLAGL2	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50chr20:30780307-30786657"	NA	inter
CUST_47612_PI429285431	5.4665785	P	6.0204105	P	0.681208338545118	0	lncRNA	51609-1_{1..2175}	"gi|218749869|ref|NR_024608.1| Homo sapiens X-ray repair complementing defective repair pseudogene (LOC442459), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|218749869|ref|NR_024608.1| Homo sapiens X-ray repair complementing defective repair pseudogene (LOC442459), non-coding RNA"	ChrX	 98716600	 98718774	-	442459	NR_024608.1	NA	NA	NA	NA	NA	inter
CUST_44322_PI429285431	5.928468	P	6.1040897	P	0.885385897889597	0	lncRNA	48954-1_{1..1703}	"gi|333944006|ref|NR_038289.1| Homo sapiens DLG1 antisense RNA 1 (DLG1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|333944006|ref|NR_038289.1| Homo sapiens DLG1 antisense RNA 1 (DLG1-AS1), non-coding RNA"	Chr3	197025118	197026820	+	100507086	NR_038289.1	NA	NA	NA	NA	NA	inter
CUST_29338_PI429285431	4.1127086	P	4.26835	P	0.897733165807977	0	lncRNA	31090-1_{1..955}	n332579|AK311283|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000430149|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000430149|1.6262600|-0.1797782	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332579|AK311283|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000430149|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000430149|1.6262600|-0.1797782	chr9	 35616041	 35616995	-	NA	NA	NA	NA	TESK1	NA	chr9:35606041-35610038	inner
CUST_2384_PI429285431	2.3594995	A	1.2476957	A	2.16115687653283	0	lncRNA	2377-1_{1..583}	"transcript_id ""ENST00000523154.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523154.1"" | genecode_v17"	chr5	139536904	139537486	+	ENSG00000254363.1	ENST00000523154.1	CTB-131B5.5	CTB-131B5.5-001	C5orf32	NA	chr5:139554653-139558370	inter
CUST_27298_PI429285431	0.9127612	A	0.9191959	A	0.99554973773169	0	lncRNA	28856-1_{1..481}	n324450|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041565|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041565|-0.9767100|-0.3219581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324450|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041565|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041565|-0.9767100|-0.3219581	chr6	 97339733	 97340213	+	NA	NA	NA	NA	NDUFAF4	NA	chr6:97337187-97345767	inner
CUST_1176_PI429285431	2.6946263	A	2.8428578	A	0.902355920590123	0	lncRNA	1165-1_{1..543}	"transcript_id ""ENST00000605334.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605334.1"" | genecode_v17"	chr2	179481308	179481850	+	ENSG00000271141.1	ENST00000605334.1	RP11-171I2.4	RP11-171I2.4-001	TTN	"hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00chr2:179471308-179491850"	NA	inter
CUST_48010_PI429285431	1.3852448	A	0.881003	A	1.41837774010664	0	lncRNA	51894-1_{1..1762}	"gi|410173417|ref|XR_172203.1| PREDICTED: Homo sapiens uncharacterized LOC100505620 (LOC100505620), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173417|ref|XR_172203.1| PREDICTED: Homo sapiens uncharacterized LOC100505620 (LOC100505620), misc_RNA"	NA	NA	NA	NA	NA	XR_172203.1	NA	NA	NA	NA	NA	Unknown
CUST_13146_PI429285431	0.8799923	A	0.8797157	A	1.00019174289046	0	lncRNA	14772-3_{6001..7115}	lnc-DPH3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DPH3-1:1	chr3	 16292555	 16293669	-	lnc-DPH3-1	lnc-DPH3-1:1	XLOC_003061	linc-ANKRD28	DPH3	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30chr3:16298568-16300513"	NA	inter
CUST_50073_PI429285431	1.578148	A	0.8961825	A	1.60432396712035	0	lncRNA	53806-1_{1..869}	hg19_lincRNAsTranscripts_TCONS_l2_00028240 range=chr8:74189427-74190657 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028240 range=chr8:74189427-74190657 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 74189427	 74190295	-	NA	NA	NA	NA	RPL7	NA	chr8:74189597-74200657	inter
CUST_46620_PI429285431	0.88040197	A	0.87856483	A	1.00127421954005	0	lncRNA	50797-1_{1..2412}	"gi|194239679|ref|NR_003369.2| Homo sapiens RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2 (RRN3P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|194239679|ref|NR_003369.2| Homo sapiens RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2 (RRN3P2), non-coding RNA"	Chr16	 29086163	 29088574	+	653390	NR_003369.2	NA	NA	NA	NA	NA	inter
CUST_4191_PI429285431	0.8825754	A	0.88409275	A	0.99894880601747	0	lncRNA	4150-1_{1..1629}	"transcript_id ""ENST00000545400.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000545400.1"" | genecode_v17"	chr12	 23328582	 23330210	+	ENSG00000256321.1	ENST00000545400.1	RP11-153K16.1	RP11-153K16.1-002	NA	NA	NA	inter
CUST_41925_PI429285431	3.402733	P	3.1352358	P	1.20371779513175	0	lncRNA	43671-1_{1..110}	ENST00000384969 ncrna:miRNA chromosome:GRCh37:15:31357235:31357344:-1 gene:ENSG00000207702 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384969 ncrna:miRNA chromosome:GRCh37:15:31357235:31357344:-1 gene:ENSG00000207702 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 31357235	 31357344	-	ENSG00000207702	ENST00000384969	NA	NA	TRPM1	NA	chr15:31347235-31367344	inner
LNCA_21_P0011389	1.9853919	A	2.4760723	A	0.711689373587625	0	lncRNA	TCONS_l2_00009373	NA	NA	NA	NA	XLOC_l2_005076	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005076), lincRNA [TCONS_l2_00009373]"	chr15:101092393-101089005	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_l2_00009373	TCONS_l2_00009373	chr15	101089005	101092393	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9331_PI429285431	8.375943	P	8.428101	P	0.964492550223737	0	lncRNA	10839-1_{1..386}	lnc-UBR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBR2-1:1	chr6	 42424474	 42424859	+	lnc-UBR2-1	lnc-UBR2-1:1	XLOC_005290	linc-UBR2-1	TRERF1	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00chr6:42414474-42419783"	NA	inter
CUST_45612_PI429285431	3.7836256	P	2.422005	A	2.56973679658505	0	lncRNA	49997-1_{1..2198}	"gi|397139377|ref|XR_159036.1| PREDICTED: Homo sapiens uncharacterized LOC100996629 (LOC100996629), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|397139377|ref|XR_159036.1| PREDICTED: Homo sapiens uncharacterized LOC100996629 (LOC100996629), misc_RNA"	NA	NA	NA	NA	NA	XR_159036.1	NA	NA	NA	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90"	NA	Unknown
CUST_1150_PI429285431	0.8939098	A	0.9055229	A	0.991982723651747	0	lncRNA	1139-1_{1..714}	"transcript_id ""ENST00000429636.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429636.1"" | genecode_v17"	chr2	164606083	164606796	-	ENSG00000237844.1	ENST00000429636.1	AC092684.1	AC092684.1-001	NA	NA	NA	inter
CUST_282_PI429285431	0.88938427	A	0.8893669	A	1.00001204003901	0	lncRNA	273-1_{1..363}	"transcript_id ""ENST00000444827.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444827.1"" | genecode_v17"	chr1	 73771912	 73772274	+	ENSG00000233973.1	ENST00000444827.1	RP4-598G3.1	RP4-598G3.1-004	NA	NA	NA	inter
CUST_28220_PI429285431	4.16859	P	4.21339	P	0.96942419835021	0	lncRNA	29853-1_{1..845}	n325507|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322392|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322392|-1.1065700|-0.3665970	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325507|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322392|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322392|-1.1065700|-0.3665970	chr2	   307911	   308755	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48583_PI429285431	0.8971492	A	0.91471887	A	0.987895488970275	0	lncRNA	52431-1_{1..1157}	hg19_lincRNAsTranscripts_TCONS_l2_00013456 range=chr2:9250612-9257041 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013456 range=chr2:9250612-9257041 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	  9250612	  9251768	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2746_PI429285431	3.9037578	P	4.182475	P	0.824323654707232	0	lncRNA	2730-1_{1..437}	"transcript_id ""ENST00000421380.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421380.1"" | genecode_v17"	chr7	  1660290	  1660726	+	ENSG00000231476.1	ENST00000421380.1	AC074389.5	AC074389.5-001	NA	NA	NA	inter
CUST_262_PI429285431	0.8984051	A	0.90911615	A	0.992603158180753	0	lncRNA	254-1_{1..359}	"transcript_id ""ENST00000418091.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418091.1"" | genecode_v17"	chr1	 63489878	 63490236	+	ENSG00000227485.1	ENST00000418091.1	RP11-5P4.2	RP11-5P4.2-001	NA	NA	NA	inter
CUST_25051_PI429285431	5.621546	P	4.1318674	P	2.80826406372579	0	lncRNA	26590-1_{1..3000}	lnc-BLID-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BLID-1:11	chr11	121971082	121974081	-	lnc-BLID-1	lnc-BLID-1:11	ENSG00000255248.2	RP11-166D19.1	NA	NA	NA	inter
LNCA_21_P0014339	0.8919409	A	1.3943709	A	0.70591677001983	0	lncRNA	XR_109343	XR_109343	XR_109343	NA	NA	LOC100506251	uncharacterized LOC100506251	NA	THC2763137	NA	"PREDICTED: Homo sapiens hypothetical LOC100506251 (LOC100506251), miscRNA [XR_109343]"	chr16:89364666-89364725	hs|16q24.3	Agilent_HUMAN_G3V2	XR_109343	XR_109343	chr16	 89364666	 89364725	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4339_PI429285431	0.8927858	A	0.90520895	A	0.991425897688543	0	lncRNA	4294-1_{1..924}	"transcript_id ""ENST00000552534.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552534.1"" | genecode_v17"	chr12	 81672964	 81673887	+	ENSG00000257467.1	ENST00000552534.1	RP11-121G22.3	RP11-121G22.3-010	PPFIA2	NA	chr12:81662964-81716152	inner
CUST_38338_PI429285431	0.88533956	A	0.8887353	A	0.997649020284918	0	lncRNA	39383-1_{1..1031}	n382066|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vhn.2||-1.1611300|-0.3299011	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n382066|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vhn.2||-1.1611300|-0.3299011	chr13	 54698461	 54699491	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4539_PI429285431	1.7983716	A	1.5360868	A	1.19937665735017	0	lncRNA	4487-1_{1..391}	"transcript_id ""ENST00000535242.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535242.1"" | genecode_v17"	chr12	132674758	132675148	+	ENSG00000256312.1	ENST00000535242.1	RP13-977J11.8	RP13-977J11.8-001	GALNT9	NA	chr12:132680917-132685542	inter
CUST_49543_PI429285431	7.7319884	P	7.8602896	P	0.914908137389346	0	lncRNA	53335-1_{1..452}	hg19_lincRNAsTranscripts_TCONS_l2_00024264 range=chr6:53794739-53859609 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024264 range=chr6:53794739-53859609 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 53794739	 53795190	+	NA	NA	NA	NA	LRRC1	NA	chr6:53784739-53788919	inter
CUST_2306_PI429285431	0.891354	A	0.8900621	A	1.00089587790166	0	lncRNA	2298-1_{1..566}	"transcript_id ""ENST00000506330.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506330.1"" | genecode_v17"	chr5	108833578	108834143	+	ENSG00000248440.1	ENST00000506330.1	RP11-231G15.1	RP11-231G15.1-001	NA	NA	NA	inter
CUST_28782_PI429285431	0.890818	A	0.8982382	A	0.994869913363308	0	lncRNA	30489-1_{1..818}	n326188|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092379|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092379|-1.0656100|-0.2527995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326188|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092379|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092379|-1.0656100|-0.2527995	chr1	230362459	230363276	+	NA	NA	NA	NA	GALNT2	NA	chr1:230352459-230398012	inner
LNCA_21_P0010960	2.2835064	A	0.8918243	A	2.62384427748649	0	lncRNA	TCONS_l2_00004345	NA	NA	NA	NA	XLOC_l2_002204	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002204), lincRNA [TCONS_l2_00004345]"	chr11:3403159-3404747	hs|11p15.4	Agilent_HUMAN_G3V2	TCONS_l2_00004345	TCONS_l2_00004345	chr11	  3403159	  3404747	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23408_PI429285431	7.709673	P	7.3371873	P	1.29458141695901	0	lncRNA	24976-1_{1..2588}	lnc-SEBOX-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEBOX-2:2	chr17	 26684396	 26686983	-	lnc-SEBOX-2	lnc-SEBOX-2:2	ENSG00000004142.6	POLDIP2	VTN	NA	chr17:26694298-26694473	inner
CUST_39101_PI429285431	4.835797	P	4.5288777	P	1.23706327917101	0	lncRNA	40077-1_{1..476}	n385653|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azv.1||-0.9617090|-0.0922346	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385653|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azv.1||-0.9617090|-0.0922346	chr9	102121913	102122388	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3758_PI429285431	2.8724463	A	1.8250649	A	2.06677508890646	0	lncRNA	3727-1_{1..3000}	"transcript_id ""ENST00000439559.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000439559.2"" | genecode_v17"	chr10	 89102493	 89105492	+	ENSG00000224914.2	ENST00000439559.2	LINC00863	LINC00863-001	FAM22D	NA	chr10:89117477-89127639	inner
CUST_35228_PI429285431	2.9770408	A	2.0064318	A	1.95966764850714	0	lncRNA	36629-1_{1..1503}	n342220|AL049681|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4710|NULL|7.6027000|-0.3085904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342220|AL049681|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4710|NULL|7.6027000|-0.3085904	chr1	 12939369	 12940871	-	NA	NA	NA	NA	PRAMEF4	NA	chr1:12939033-12946025	inner
CUST_40790_PI429285431	2.7169735	A	2.6248927	A	1.06590643186333	0	lncRNA	41501-1_{1..3000}	n410547|NR_037714|lncRNA|Homosapiens||RefGeneNoncode|NR_037714||2.6069400|-0.2597557	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410547|NR_037714|lncRNA|Homosapiens||RefGeneNoncode|NR_037714||2.6069400|-0.2597557	chr17	 33336130	 33339129	-	NA	NA	NA	NA	RAD51D	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00chr17:33426811-33446888"	NA	inter
CUST_15666_PI429285431	0.9066434	A	1.0031248	A	0.935311350079484	0	lncRNA	17354-1_{1..403}	lnc-CEP44-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEP44-1:2	chr4	175447963	175448365	+	lnc-CEP44-1	lnc-CEP44-1:2	XLOC_003787	linc-ADAM29-3	HPGD	NA	chr4:175437963-175444044	inter
CUST_13570_PI429285431	0.91114694	A	0.8983802	A	1.00888850002178	0	lncRNA	15211-1_{1..405}	lnc-APOL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APOL1-2:1	chr22	 36948486	 36948890	+	lnc-APOL1-2	lnc-APOL1-2:1	XLOC_014228	linc-NCF4-2	CACNG2	NA	chr22:36956916-36958747	inter
CUST_77_PI429285431	3.1926928	P	3.252393	A	0.959463480422389	0	lncRNA	71-1_{1..2934}	"transcript_id ""ENST00000374945.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000374945.1"" | genecode_v17"	chr17	 76257430	 76260363	-	ENSG00000204277.1	ENST00000374945.1	RP11-219G17.4	RP11-219G17.4-001	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60"	NA	inter
CUST_51887_PI429285431	13.687345	P	13.918557	P	0.851918898777725	0	lncRNA	55436-1_{1..271}	hg19_lincRNAsTranscripts_TCONS_l2_00012696 range=chr19:54278778-54279108 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012696 range=chr19:54278778-54279108 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 54278778	 54279048	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24524_PI429285431	2.5519257	A	2.894548	A	0.7886066055752	0	lncRNA	26075-1_{1..706}	lnc-SMAD5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMAD5-2:1	chr5	135651411	135652116	+	lnc-SMAD5-2	lnc-SMAD5-2:1	ENSG00000250947.1	TRPC7-AS2	TRPC7	"hg19_refFlat_TRPC7:range=chr5:135549123-1357009425'pad=0,hg19_refFlat_TRPC7:range=chr5:135549123-1357009425'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr5:135641411-135661788"	NA	inner
CUST_31373_PI429285431	2.4374373	A	2.1986861	A	1.17997083389658	0	lncRNA	33152-1_{1..1577}	n337840|BC037860|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|223|NULL|-1.2405800|-0.3565943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337840|BC037860|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|223|NULL|-1.2405800|-0.3565943	chr1	 32838743	 32840319	-	NA	NA	NA	NA	BSDC1	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60chr1:32830704-32850303"	NA	inner
CUST_42967_PI429285431	5.1282597	P	4.8184147	P	1.23957451560961	0	lncRNA	46111-1_{1..85}	ENST00000391007 ncrna:snoRNA chromosome:GRCh37:2:203142831:203142915:1 gene:ENSG00000212309 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391007 ncrna:snoRNA chromosome:GRCh37:2:203142831:203142915:1 gene:ENSG00000212309 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	203142831	203142915	+	ENSG00000212309	ENST00000391007	NA	NA	NOP58	NA	chr2:203132831-203152915	inner
CUST_14208_PI429285431	2.3623798	A	0.8932511	A	2.76854639769084	0	lncRNA	15861-1_{1..752}	lnc-CAPN13-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CAPN13-2:3	chr2	 30571163	 30571914	-	lnc-CAPN13-2	lnc-CAPN13-2:3	XLOC_002041	linc-ALK-2	NA	NA	NA	inter
CUST_45871_PI429285431	7.3180485	P	7.1743565	P	1.10472861184967	0	lncRNA	50197-1_{1..1054}	"gi|218505719|ref|NR_024597.1| Homo sapiens chromosome 11 open reading frame 73 (C11orf73), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|218505719|ref|NR_024597.1| Homo sapiens chromosome 11 open reading frame 73 (C11orf73), transcript variant 3, non-coding RNA"	Chr11	 86013253	 86014306	+	51501	NR_024597.1	NA	NA	NA	NA	NA	inter
CUST_32598_PI429285431	0.8936603	A	0.9050672	A	0.992124514848184	0	lncRNA	34259-1_{1..806}	n339219|BC032905|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1651|NULL|-1.1368800|-0.4262490	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339219|BC032905|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1651|NULL|-1.1368800|-0.4262490	chr16	 56217637	 56218442	-	NA	NA	NA	NA	GNAO1	NA	chr16:56225251-56230218	inter
LNCA_21_P0014847	4.5832205	P	5.476365	P	0.538439255444941	0	lncRNA	XR_132718	XR_132718	XR_132718	NA	NA	LOC100506802	uncharacterized LOC100506802	NA	THC2562926	NA	"PREDICTED: Homo sapiens hypothetical LOC100506802, transcript variant 2 (LOC100506802), miscRNA [XR_132718]"	chr3:50405569-50405628	hs|3p21.31	Agilent_HUMAN_G3V2	XR_132718	XR_132718	chr3	 50405569	 50405628	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47740_PI429285431	1.1488127	A	1.4446694	A	0.814588470488207	0	lncRNA	51690-1_{1..3000}	"gi|385137063|ref|NR_047601.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 31, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137063|ref|NR_047601.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 31, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047601.1	NA	NA	NA	NA	NA	inter
CUST_36835_PI429285431	8.292308	P	8.3608885	P	0.953575781208315	0	lncRNA	38000-1_{1..1239}	n345308|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_857|NULL|-1.2928100|-0.2244677	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345308|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_857|NULL|-1.2928100|-0.2244677	chr15	 65176422	 65177660	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26516_PI429285431	0.92590475	A	0.92646325	A	0.999612952221982	0	lncRNA	28023-1_{1..281}	lnc-RTL1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RTL1-7:1	chr14	101903163	101903443	-	lnc-RTL1-7	lnc-RTL1-7:1	ENSG00000259023.1	LINC00524	NA	NA	NA	inter
CUST_33978_PI429285431	1.1288054	A	0.9257218	A	1.15115619556321	0	lncRNA	35515-1_{1..2344}	n340789|BC041872|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3252|NULL|-1.0710700|-0.1996039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340789|BC041872|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3252|NULL|-1.0710700|-0.1996039	chr17	 60783566	 60785909	+	NA	NA	NA	NA	10-Mar	"hg19_refFlat_MARCH10:range=chr17:60779064-608790965'pad=0,hg19_refFlat_MARCH10:range=chr17:60779064-608790965'pad=0 3'pad=0 strand=- repeatMasking=none,-95.70chr17:60778675-60825283"	NA	inter
CUST_30014_PI429285431	0.8933313	A	0.90201646	A	0.993997990291929	0	lncRNA	31782-1_{1..258}	n334448|U11873|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218061|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218061|-0.9266190|-0.2956374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334448|U11873|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218061|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218061|-0.9266190|-0.2956374	chr2	218990428	218990685	+	NA	NA	NA	NA	CXCR2	NA	chr2:218990013-219001976	inner
CUST_32494_PI429285431	2.8958664	A	3.240021	A	0.787769463713809	0	lncRNA	34162-1_{1..3000}	n339099|BX647541|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1529|NULL|-0.4788370|-0.1837879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339099|BX647541|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1529|NULL|-0.4788370|-0.1837879	chr16	 17196180	 17199179	-	NA	NA	NA	NA	XYLT1	NA	chr16:17188210-17210389	inner
CUST_6868_PI429285431	7.993473	P	8.396763	P	0.756131991245005	0	lncRNA	6818-1_{1..407}	"transcript_id ""ENST00000440379.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440379.1"" | genecode_v17"	chr21	 40285093	 40285499	-	ENSG00000234035.1	ENST00000440379.1	AP001044.2	AP001044.2-001	NA	NA	NA	inter
CUST_29857_PI429285431	4.843922	P	5.1411114	P	0.813836335933196	0	lncRNA	31620-1_{1..335}	n333766|L12142|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192147|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192147|3.1682700|-0.1254395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333766|L12142|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192147|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192147|3.1682700|-0.1254395	chr1	 63789126	 63789460	+	NA	NA	NA	NA	FOXD3	NA	chr1:63788730-63790797	inner
CUST_12035_PI429285431	0.90223	A	0.91737586	A	0.989556604762624	0	lncRNA	13619-1_{1..388}	lnc-CBLB-7:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLB-7:10	chr3	106640905	106641292	-	lnc-CBLB-7	lnc-CBLB-7:10	XLOC_003203	linc-CBLB-3	NA	NA	NA	inter
CUST_13990_PI429285431	2.0136821	A	2.6696959	A	0.634629372477338	0	lncRNA	15635-1_{1..377}	lnc-FGFBP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGFBP3-1:1	chr10	 93557994	 93558370	-	lnc-FGFBP3-1	lnc-FGFBP3-1:1	XLOC_008905	linc-PPP1R3C	TNKS2	NA	chr10:93558151-93568048	inter
CUST_15933_PI429285431	9.46146	P	9.457561	P	1.00270623612079	0	lncRNA	17630-1_{1..612}	lnc-EIF2S3L.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2S3L.1-3:1	chr12	 10741745	 10742356	+	lnc-EIF2S3L.1-3	lnc-EIF2S3L.1-3:1	XLOC_009663	linc-PRH2-1	NA	NA	NA	inter
CUST_51451_PI429285431	4.035538	P	4.166762	P	0.91305647332128	0	lncRNA	55028-1_{1..866}	hg19_lincRNAsTranscripts_TCONS_l2_00010107 range=chr16:32164086-32170547 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010107 range=chr16:32164086-32170547 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 32164086	 32164951	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30355_PI429285431	0.8884194	A	0.8967564	A	0.994237896919288	0	lncRNA	32131-1_{1..331}	n335449|AY684333|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257116_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257116_06|-1.3144600|-0.3891835	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335449|AY684333|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257116_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257116_06|-1.3144600|-0.3891835	chr6	  3843220	  3843550	-	NA	NA	NA	NA	FAM50B	NA	chr6:3849632-3851551	inter
CUST_31792_PI429285431	2.7406945	A	3.618538	P	0.544180248965058	0	lncRNA	33530-2_{3001..5128}	n338332|BX648502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|726|NULL|-1.0447100|-0.2331900	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338332|BX648502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|726|NULL|-1.0447100|-0.2331900	chr14	 62026037	 62028164	-	NA	NA	NA	NA	PRKCH	NA	chr14:62013037-62017698	inter
CUST_32802_PI429285431	0.8959441	A	0.90792376	A	0.991730712667895	0	lncRNA	34437-1_{1..1640}	n339448|BC042737|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1886|NULL|-1.3036400|-0.3901473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339448|BC042737|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1886|NULL|-1.3036400|-0.3901473	chr3	118661925	118663564	+	NA	NA	NA	NA	IGSF11	NA	chr3:118651925-118677088	inner
CUST_3416_PI429285431	1.1947017	A	0.92963266	A	1.20169355505337	0	lncRNA	3388-1_{1..747}	"transcript_id ""ENST00000439760.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439760.1"" | genecode_v17"	chr9	 45108581	 45109327	+	ENSG00000231527.1	ENST00000439760.1	RP11-374M1.2	RP11-374M1.2-002	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00"	NA	inter
CUST_15115_PI429285431	0.8914635	A	1.1188322	A	0.854191412960357	0	lncRNA	16775-6_{15001..18000}	lnc-KIF13B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIF13B-1:1	chr8	 29164969	 29167968	-	lnc-KIF13B-1	lnc-KIF13B-1:1	XLOC_007035	linc-KIF13B	NA	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0,hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
CUST_3188_PI429285431	0.907251	A	0.919222	A	0.991736665702671	0	lncRNA	3168-1_{1..1094}	"transcript_id ""ENST00000603284.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603284.1"" | genecode_v17"	chr8	 77316233	 77317326	+	ENSG00000270866.1	ENST00000603284.1	RP11-706J10.2	RP11-706J10.2-001	NA	NA	NA	inter
CUST_49610_PI429285431	1.7360812	A	1.244355	A	1.40612631473677	0	lncRNA	53399-2_{3001..4919}	hg19_lincRNAsTranscripts_TCONS_l2_00025057 range=chr6:170484940-170489998 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025057 range=chr6:170484940-170489998 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	170487940	170489858	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37917_PI429285431	4.9877925	P	4.8096647	P	1.13141468388242	0	lncRNA	39006-1_{1..2365}	n346458|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2008|NULL|-1.3472300|-0.2794735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346458|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2008|NULL|-1.3472300|-0.2794735	chr19	 42041050	 42043414	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51516_PI429285431	6.238076	P	6.4123783	P	0.886195987655842	0	lncRNA	55089-2_{3001..3875}	hg19_lincRNAsTranscripts_TCONS_l2_00010377 range=chr16:89979403-89983331 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010377 range=chr16:89979403-89983331 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 89982403	 89983277	-	NA	NA	NA	NA	TUBB3	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30chr16:89988417-89993331"	NA	inter
CUST_48442_PI429285431	10.076992	P	9.651035	P	1.34346338275675	0	lncRNA	52295-1_{1..508}	hg19_lincRNAsTranscripts_TCONS_l2_00001619 range=chr1:171652534-171653191 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001619 range=chr1:171652534-171653191 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	171652534	171653041	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009273	0.88868386	A	1.6225448	A	0.6012925796746	0	lncRNA	THC2718777	NA	NA	NA	NA	XLOC_012308	NA	NA	THC2718777	NA	"BROAD Institute lincRNA (XLOC_012308), lincRNA [TCONS_00025490]"	chr17:072972304-072972363	hs|17q25.1	Agilent_HUMAN_G3V2	THC2718777	THC2718777	chr17	 72972304	 72972363	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17199_PI429285431	6.2151084	P	6.214156	P	1.00066037132396	0	lncRNA	18912-1_{1..521}	lnc-AC007557.1.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC007557.1.1-3:2	chr2	217860873	217861393	+	lnc-AC007557.1.1-3	lnc-AC007557.1.1-3:2	XLOC_001863	linc-RUFY4-3	NA	NA	NA	inter
LNCA_21_P0011658	0.8862787	A	0.8897925	A	0.997567383056755	0	lncRNA	ENST00000507941	NA	BC127901	NA	Hs.558645	XLOC_l2_006425	NA	ENST00000507941	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006425), lincRNA [TCONS_l2_00011998]"	chr21:14417723-14417782	hs|21q11.2	Agilent_HUMAN_G3V2	ENST00000507941	ENST00000507941	chr21	 14417723	 14417782	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15277_PI429285431	1.3052387	A	0.9230196	A	1.30334507145642	0	lncRNA	16952-2_{3001..4874}	lnc-C5orf32-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf32-1:8	chr5	139555892	139557765	+	lnc-C5orf32-1	lnc-C5orf32-1:8	XLOC_004577	linc-C5orf32-1	C5orf32	NA	chr5:139554653-139563608	inter
LNCA_21_P0003123	6.107523	P	6.2453356	P	0.90889617055949	0	lncRNA	TCONS_00006524	NA	NA	NA	NA	XLOC_003147	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003147), lincRNA [TCONS_00006524]"	chr3:64474706-64474647	hs|3p14.1	Agilent_HUMAN_G3V2	TCONS_00006524	TCONS_00006524	chr3	 64474647	 64474706	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11352_PI429285431	0.8847842	A	1.1625597	A	0.824861896655309	0	lncRNA	12915-1_{1..785}	lnc-UCHL3-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UCHL3-7:2	chr13	 75018235	 75019019	+	lnc-UCHL3-7	lnc-UCHL3-7:2	XLOC_010428	linc-UCHL3-5	NA	NA	NA	inter
CUST_18679_PI429285431	0.88622946	A	0.8964487	A	0.992941591018591	0	lncRNA	20380-1_{1..1865}	lnc-PGR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PGR-1:1	chr11	100558364	100560228	-	lnc-PGR-1	lnc-PGR-1:1	ENSG00000248027	CTD-2383M3.1	ARHGAP42	"hg19_refFlat_ARHGAP42:range=chr11:100558410-1008595325'pad=0,hg19_refFlat_ARHGAP42:range=chr11:100558410-1008595325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40chr11:100558407-100568686"	NA	inner
LNCA_21_P0001889	1.270924	A	1.9276906	A	0.634298308493098	0	lncRNA	ENST00000453878	NA	NA	NA	NA	XLOC_001599	NA	ENST00000453878	NA	NA	"BROAD Institute lincRNA (XLOC_001599), lincRNA [TCONS_00002957]"	chr2:103636294-103636353	hs|2q12.1	Agilent_HUMAN_G3V2	ENST00000453878	ENST00000453878	chr2	103636294	103636353	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012700	4.841261	P	4.667485	P	1.1280069838905	0	lncRNA	TCONS_l2_00021471	NA	NA	NA	NA	XLOC_l2_011407	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011407), lincRNA [TCONS_l2_00021471]"	chr4:187422425-187422366	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_l2_00021471	TCONS_l2_00021471	chr4	187422366	187422425	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005585	1.3793075	A	0.88501185	A	1.40863286700971	0	lncRNA	TCONS_00014236	NA	NA	NA	NA	XLOC_006304	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006304), lincRNA [TCONS_00014236]"	chr7:155058936-155058995	hs|7q36.2	Agilent_HUMAN_G3V2	TCONS_00014236	TCONS_00014236	chr7	155058936	155058995	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35626_PI429285431	6.47852	P	6.45821	P	1.01417737837767	0	lncRNA	37041-1_{1..1814}	n342770|CR602694|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5273|NULL|1.0024600|-0.1491355	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342770|CR602694|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5273|NULL|1.0024600|-0.1491355	chr11	 67559118	 67560931	-	NA	NA	NA	NA	NA	"hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.60;hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0 3'pad=0 strand=- repeatMasking=none,-95.60;hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00"	NA	inter
CUST_37357_PI429285431	0.87947667	A	0.88001716	A	0.999625431048851	0	lncRNA	38461-1_{1..1351}	n345803|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1352|NULL|-1.2474000|-0.2754430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345803|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1352|NULL|-1.2474000|-0.2754430	chr3	 82234525	 82235875	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2944_PI429285431	0.89201695	A	0.89773256	A	0.996046078456938	0	lncRNA	2925-1_{1..408}	"transcript_id ""ENST00000471935.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000471935.1"" | genecode_v17"	chr7	142197570	142197977	-	ENSG00000241657.1	ENST00000471935.1	TRBV11-2	TRBV11-2-001	NA	NA	NA	inter
LNCA_21_P0001435	1.9407449	A	0.8845014	A	2.07950982318389	0	lncRNA	TCONS_00001324	NA	NA	NA	NA	XLOC_000609	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000609), lincRNA [TCONS_00001324]"	chr1:231454809-231454868	hs|1q42.2	Agilent_HUMAN_G3V2	TCONS_00001324	TCONS_00001324	chr1	231454809	231454868	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1243_PI429285431	6.4465413	P	6.5660343	P	0.920511084969241	0	lncRNA	1235-1_{1..541}	"transcript_id ""ENST00000451711.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451711.1"" | genecode_v17"	chr2	217732735	217733275	+	ENSG00000227021.1	ENST00000451711.1	AC007557.3	AC007557.3-001	TNP1	NA	chr2:217724181-217724782	inter
CUST_15567_PI429285431	0.88035834	A	0.8799447	A	1.00028675450598	0	lncRNA	17252-1_{1..331}	lnc-FOXG1-6:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXG1-6:12	chr14	 27133246	 27133576	+	lnc-FOXG1-6	lnc-FOXG1-6:12	XLOC_010776	linc-FOXG1-5	NA	NA	NA	inter
CUST_45910_PI429285431	8.072467	P	7.9467707	P	1.09103418058448	0	lncRNA	50220-1_{1..1396}	"gi|298493255|ref|NR_033759.1| Homo sapiens ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G (ATP5L), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298493255|ref|NR_033759.1| Homo sapiens ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G (ATP5L), transcript variant 2, non-coding RNA"	NW_003871072.2	    26827	    28222	+	10632	NR_033759.1	NA	NA	NA	NA	NA	Unknown
CUST_40163_PI429285431	0.8815876	A	0.8823332	A	0.999483322985737	0	lncRNA	40999-1_{1..2129}	n407875|NR_027433|lncRNA|Homosapiens||RefGeneNoncode|NR_027433||7.3068500|-0.1195196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407875|NR_027433|lncRNA|Homosapiens||RefGeneNoncode|NR_027433||7.3068500|-0.1195196	chr2	171568948	171571076	-	NA	NA	NA	NA	SP5	NA	chr2:171571857-171574498	inter
CUST_16717_PI429285431	0.9030856	A	1.0467769	A	0.90520013193903	0	lncRNA	18424-1_{1..579}	lnc-CEP44-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEP44-1:1	chr4	175451245	175451823	+	lnc-CEP44-1	lnc-CEP44-1:1	XLOC_003787	linc-ADAM29-3	HPGD	NA	chr4:175441245-175444044	inter
CUST_30822_PI429285431	5.843797	P	5.9775224	P	0.911474752605587	0	lncRNA	32609-1_{1..213}	n336751|Z77840|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328131|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328131|-0.2929880|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336751|Z77840|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328131|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328131|-0.2929880|-1.0000000	chr7	142032441	142032653	+	NA	NA	NA	NA	PRSS1	NA	chr7:142457319-142460927	inner
CUST_44961_PI429285431	5.3478413	P	5.431447	P	0.943696135293224	0	lncRNA	49472-1_{1..2925}	"gi|227495697|ref|NR_024548.1| Homo sapiens CGRP receptor component (CRCP), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|227495697|ref|NR_024548.1| Homo sapiens CGRP receptor component (CRCP), transcript variant 5, non-coding RNA"	Chr7	 65579805	 65582729	+	27297	NR_024548.1	NA	NA	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-59.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-47.92;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60"	NA	inter
LNCA_21_P0008923	4.1911	P	4.307245	P	0.922649755842406	0	lncRNA	TCONS_00024373	NA	NA	NA	NA	XLOC_011697	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011697), lincRNA [TCONS_00024373]"	chr16:34266742-34266801	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_00024373	TCONS_00024373	chr16	 34266742	 34266801	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33166_PI429285431	0.8962211	A	0.9065811	A	0.992844717017997	0	lncRNA	34760-1_{1..3000}	n339857|AL713660|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2305|NULL|-0.9804380|-0.2728356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339857|AL713660|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2305|NULL|-0.9804380|-0.2728356	chr4	 10069712	 10072711	-	NA	NA	NA	NA	WDR1	NA	chr4:10075963-10084643	inter
CUST_24909_PI429285431	1.6220784	A	2.1101775	A	0.712963882879483	0	lncRNA	26450-1_{1..388}	lnc-FAM101B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM101B-1:1	chr17	   263770	   264157	-	lnc-FAM101B-1	lnc-FAM101B-1:1	ENSG00000241525.2	AC108004.3	C17orf97	"hg19_refFlat_C17orf97:range=chr17:260134-2639065'pad=0,hg19_refFlat_C17orf97:range=chr17:260134-2639065'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.90chr17:260118-264457"	NA	inner
LNCA_21_P0010848	0.8902104	A	0.88968015	A	1.00036760884407	0	lncRNA	TCONS_l2_00003330	NA	NA	NA	NA	XLOC_l2_001800	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001800), lincRNA [TCONS_l2_00003330]"	chr10:133113780-133113839	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_l2_00003330	TCONS_l2_00003330	chr10	133113780	133113839	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30191_PI429285431	0.8866129	A	0.89162415	A	0.99653249193109	0	lncRNA	31965-1_{1..342}	n334953|AJ459855|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248112_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248112_06|-1.3609700|-0.2589099	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334953|AJ459855|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248112_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248112_06|-1.3609700|-0.2589099	chr6	   914197	   914538	-	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90"	NA	inter
LNCA_21_P0008345	0.8910472	A	0.8905871	A	1.00031896787721	0	lncRNA	TCONS_00022524	NA	NA	NA	NA	XLOC_010847	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010847), lincRNA [TCONS_00022524]"	chr14:59596169-59596228	hs|14q23.1	Agilent_HUMAN_G3V2	TCONS_00022524	TCONS_00022524	chr14	 59596169	 59596228	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_880_PI429285431	6.834514	P	6.799526	P	1.02454830104417	0	lncRNA	870-1_{1..453}	"transcript_id ""ENST00000443237.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443237.1"" | genecode_v17"	chr2	 52949815	 52950267	-	ENSG00000228033.1	ENST00000443237.1	AC010967.2	AC010967.2-002	NA	NA	NA	inter
CUST_7650_PI429285431	0.9016302	A	0.90723246	A	0.996124339111586	0	lncRNA	9282-1_{1..1373}	lnc-C1orf31-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf31-6:1	chr1	234795880	234797252	+	lnc-C1orf31-6	lnc-C1orf31-6:1	ENSG00000228044	RP4-781K5.4	NA	NA	NA	inter
CUST_16922_PI429285431	1.3983753	A	2.1247606	A	0.604416395109291	0	lncRNA	18633-1_{1..403}	lnc-TK2-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TK2-4:4	chr16	 66167445	 66167847	-	lnc-TK2-4	lnc-TK2-4:4	XLOC_011980	linc-CDH11-2	NA	NA	NA	inter
CUST_43946_PI429285431	4.723999	P	5.036236	P	0.805391973704105	0	lncRNA	48656-1_{1..557}	"gi|310119025|ref|XR_109883.1| PREDICTED: Homo sapiens uncharacterized LOC100506797, transcript variant 3 (LOC100506797), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310119025|ref|XR_109883.1| PREDICTED: Homo sapiens uncharacterized LOC100506797, transcript variant 3 (LOC100506797), misc_RNA"	Chr2	118940498	118941054	-	100506797	XR_109883.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0008656	6.196823	P	6.4179993	P	0.857865691250302	0	lncRNA	TCONS_00023466	NA	NA	NA	NA	XLOC_011313	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011313), lincRNA [TCONS_00023466]"	chr15:74806253-74806312	hs|15q24.1	Agilent_HUMAN_G3V2	TCONS_00023466	TCONS_00023466	chr15	 74806253	 74806312	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29708_PI429285431	7.8811398	P	7.7020965	P	1.13213288061389	0	lncRNA	31470-1_{1..575}	n333374|BC002789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086165_11|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086165_11|-1.1971200|-0.3081637	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333374|BC002789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086165_11|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086165_11|-1.1971200|-0.3081637	chr6	  1971121	  1971695	-	NA	NA	NA	NA	GMDS	NA	chr6:1961121-1983057	inner
CUST_30402_PI429285431	2.211276	A	1.1965721	A	2.02048816364621	0	lncRNA	32182-1_{1..573}	n335525|BC069560|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000263711|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000263711|0.7824010|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335525|BC069560|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000263711|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000263711|0.7824010|-1.0000000	chr17	 39382908	 39383480	+	NA	NA	NA	NA	KRTAP9-3	NA	chr17:39388715-39389706	inner
CUST_21972_PI429285431	2.5769963	A	2.5571055	A	1.01388273440607	0	lncRNA	23580-1_{1..500}	lnc-TRIM41-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM41-1:1	chr5	180626693	180627192	+	lnc-TRIM41-1	lnc-TRIM41-1:1	ENSG00000250900.2	CTC-338M12.6	TRIM7	"hg19_refFlat_TRIM7:range=chr5:180622166-1806270755'pad=0,hg19_refFlat_TRIM7:range=chr5:180622166-1806270755'pad=0 3'pad=0 strand=- repeatMasking=none,-103.80;hg19_refFlat_TRIM7:range=chr5:180622166-1806321105'pad=0,hg19_refFlat_TRIM7:range=chr5:180622166-1806321105'pad=0 3'pad=0 strand=- repeatMasking=none,-103.80;hg19_refFlat_TRIM7:range=chr5:180622166-1806271535'pad=0,hg19_refFlat_TRIM7:range=chr5:180622166-1806271535'pad=0 3'pad=0 strand=- repeatMasking=none,-103.80chr5:180620924-180632177"	NA	inner
CUST_10446_PI429285431	7.538676	P	7.673857	P	0.910555588449514	0	lncRNA	11972-1_{1..736}	lnc-SRCIN1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRCIN1-1:4	chr17	 36608562	 36609297	-	lnc-SRCIN1-1	lnc-SRCIN1-1:4	XLOC_012457	linc-GPR179	ARHGAP23	NA	chr17:36598562-36618672	inner
CUST_44702_PI429285431	11.17587	P	10.641667	P	1.44814192446923	0	lncRNA	49259-1_{1..1580}	"gi|209870098|ref|NR_024240.1| Homo sapiens major histocompatibility complex, class I, J (pseudogene) (HLA-J), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209870098|ref|NR_024240.1| Homo sapiens major histocompatibility complex, class I, J (pseudogene) (HLA-J), non-coding RNA"	Chr6	 29973748	 29975327	+	3137	NR_024240.1	NA	NA	NA	NA	NA	inter
CUST_39379_PI429285431	4.6136723	P	4.287082	P	1.25404602694902	0	lncRNA	40342-1_{1..522}	n386517|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mss.1||-1.1497800|-0.2447079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386517|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mss.1||-1.1497800|-0.2447079	chr9	102121666	102122187	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2176_PI429285431	1.1860049	A	0.91496813	A	1.2066746738726	0	lncRNA	2167-1_{1..509}	"transcript_id ""ENST00000515077.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515077.1"" | genecode_v17"	chr5	 66563850	 66564358	+	ENSG00000251206.1	ENST00000515077.1	CTD-2187J20.1	CTD-2187J20.1-001	NA	NA	NA	inter
CUST_26651_PI429285431	1.1801358	A	0.92297	A	1.19512854568176	0	lncRNA	28151-1_{1..2106}	lnc-CLUL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLUL1-1:1	chr18	   652275	   654380	+	lnc-CLUL1-1	lnc-CLUL1-1:1	ENSG00000266456.1	RP11-806L2.2	C18orf56	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.56;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60chr18:649620-658340"	NA	inner
CUST_9758_PI429285431	1.2708731	A	1.3801061	A	0.927080807740749	0	lncRNA	11275-1_{1..810}	lnc-NKAP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NKAP-1:1	chrX	119056657	119057466	-	lnc-NKAP-1	lnc-NKAP-1:1	XLOC_008220	linc-RNF113A	AKAP14	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chrX:119046657-119054679"	NA	inter
CUST_3983_PI429285431	5.803798	P	6.147545	P	0.787992061135666	0	lncRNA	3944-3_{6001..8708}	"transcript_id ""ENST00000534336.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000534336.1"" | genecode_v17"	chr11	 65271233	 65273940	+	ENSG00000251562.3	ENST00000534336.1	MALAT1	MALAT1-001	NA	NA	NA	inter
LNCA_21_P0001582	0.90270424	A	2.0127993	A	0.463263505242642	0	lncRNA	TCONS_00001690	NA	NA	NA	NA	XLOC_001045	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001045), lincRNA [TCONS_00001690]"	chr1:156475975-156471594	hs|1q22	Agilent_HUMAN_G3V2	TCONS_00001690	TCONS_00001690	chr1	156471594	156475975	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001566	0.9034409	A	0.92543375	A	0.984871323908042	0	lncRNA	TCONS_00001622	NA	NA	NA	NA	XLOC_000950	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000950), lincRNA [TCONS_00001622]"	chr1:106594976-106594917	hs|1p21.1	Agilent_HUMAN_G3V2	TCONS_00001622	TCONS_00001622	chr1	106594917	106594976	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21432_PI429285431	0.9047289	A	0.9059422	A	0.999159358063406	0	lncRNA	23051-1_{1..902}	lnc-STC1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STC1-3:2	chr8	 24372299	 24373200	-	lnc-STC1-3	lnc-STC1-3:2	ENSG00000253643.1	RP11-561E1.1	ADAM7	"hg19_refFlat_ADAM7:range=chr8:24298622-243660595'pad=0,hg19_refFlat_ADAM7:range=chr8:24298622-243660595'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30chr8:24362299-24366281"	NA	inter
CUST_36367_PI429285431	1.0167522	A	0.9294939	A	1.06234937241261	0	lncRNA	37588-1_{1..3000}	n344885|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_434|NULL|-1.2932200|-0.3891559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344885|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_434|NULL|-1.2932200|-0.3891559	chr6	  3999740	  4002739	-	NA	NA	NA	NA	PRPF4B	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00chr6:4021569-4028057"	NA	inter
CUST_14006_PI429285431	0.88958645	A	0.92276585	A	0.977264235456603	0	lncRNA	15652-1_{1..1671}	lnc-PLCXD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLCXD3-1:1	chr5	 41293778	 41295448	-	lnc-PLCXD3-1	lnc-PLCXD3-1:1	XLOC_004799	linc-C6	NA	NA	NA	inter
CUST_15005_PI429285431	1.6902534	A	1.0915825	A	1.51432083757435	0	lncRNA	16667-1_{1..1890}	lnc-SPRY2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPRY2-1:1	chr13	 80648614	 80650503	-	lnc-SPRY2-1	lnc-SPRY2-1:1	XLOC_010670	linc-RBM26-1	NA	"hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
LNCA_21_P0008749	2.3376975	A	3.4942489	P	0.448583543327138	0	lncRNA	TCONS_00023701	NA	NA	NA	NA	XLOC_011506	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011506), lincRNA [TCONS_00023701]"	chr15:65377002-65376943	hs|15q22.31	Agilent_HUMAN_G3V2	TCONS_00023701	TCONS_00023701	chr15	 65376943	 65377002	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16262_PI429285431	3.7048573	P	3.030405	P	1.59599076100547	0	lncRNA	17965-1_{1..426}	lnc-ZEB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZEB2-1:1	chr2	145282068	145282493	-	lnc-ZEB2-1	lnc-ZEB2-1:1	XLOC_002344	linc-ZEB2-7	ZEB2	NA	chr2:145272068-145277958	inter
CUST_49835_PI429285431	0.90877384	A	1.099176	A	0.87636139620524	0	lncRNA	53593-1_{1..386}	hg19_lincRNAsTranscripts_TCONS_l2_00025980 range=chr7:65235977-65242276 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025980 range=chr7:65235977-65242276 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 65235977	 65236362	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24818_PI429285431	10.523887	P	10.496034	P	1.01949379879568	0	lncRNA	26358-1_{1..512}	lnc-CYB5D2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYB5D2-2:1	chr17	  4067960	  4068471	+	lnc-CYB5D2-2	lnc-CYB5D2-2:1	ENSG00000263165.1	RP11-810M2.2	ANKFY1	NA	chr17:4066665-4078007	inter
CUST_47854_PI429285431	1.0850834	A	1.6328418	A	0.684082201746772	0	lncRNA	51759-1_{1..1314}	"gi|410171062|ref|XR_172501.1| PREDICTED: Homo sapiens killer cell immunoglobulin-like receptor 3DL2-like (LOC100996743), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171062|ref|XR_172501.1| PREDICTED: Homo sapiens killer cell immunoglobulin-like receptor 3DL2-like (LOC100996743), misc_RNA"	NA	NA	NA	NA	NA	XR_172501.1	NA	NA	NA	NA	NA	Unknown
CUST_37762_PI429285431	0.919098	A	0.9115836	A	1.00522217343498	0	lncRNA	38859-1_{1..1069}	n346270|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1820|NULL|-1.5332900|-0.2829472	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346270|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1820|NULL|-1.5332900|-0.2829472	chr6	 79983891	 79984959	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_337_PI429201921	0.90614635	A	0.923148	A	0.988284521206148	0	lncRNA	223-1_{1..3000}	TC15002461.hg.1	TCONS_l2_00008970-XLOC_l2_004860 // Broad TUCP // linc-CHRFAM7A-2 chr15:-:30704540-30712576 // chr15 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr15:-:30704540-30712576	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00008970-XLOC_l2_004860	linc-CHRFAM7A-2	chr15	 30704540	 30712576	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16912_PI429285431	1.4051409	A	2.6683266	A	0.416622973489097	0	lncRNA	18622-1_{1..358}	lnc-NAV1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAV1-1:2	chr1	201552807	201553164	+	lnc-NAV1-1	lnc-NAV1-1:2	XLOC_000523	linc-NAV1-1	NA	NA	NA	inter
LNCA_21_P0004774	3.7912207	P	3.611734	P	1.1324808854616	0	lncRNA	ENST00000438522	NA	NA	NA	NA	XLOC_005812	NA	ENST00000438522	NA	NA	"BROAD Institute lincRNA (XLOC_005812), lincRNA [TCONS_00011546]"	chr6:114798588-114798529	hs|6q22.1	Agilent_HUMAN_G3V2	ENST00000438522	ENST00000438522	chr6	114798529	114798588	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48265_PI429285431	1.5522532	A	0.8942643	A	1.57788154154225	0	lncRNA	52128-1_{1..747}	hg19_lincRNAsTranscripts_TCONS_l2_00000056 range=chr1:2512865-2515959 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000056 range=chr1:2512865-2515959 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	  2512865	  2513611	+	NA	NA	NA	NA	MMEL1	NA	chr1:2522081-2525959	inter
CUST_42883_PI429285431	0.90286285	A	0.9160052	A	0.990931783695454	0	lncRNA	45966-1_{1..71}	ENST00000517259 ncrna:snoRNA chromosome:GRCh37:10:103862019:103862089:1 gene:ENSG00000253068 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517259 ncrna:snoRNA chromosome:GRCh37:10:103862019:103862089:1 gene:ENSG00000253068 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	103862019	103862089	+	ENSG00000253068	ENST00000517259	NA	NA	LDB1	NA	chr10:103867317-103872089	inter
CUST_30287_PI429285431	0.90216345	A	1.306136	A	0.7557743440567	0	lncRNA	32063-1_{1..231}	n335183|AY429526|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254614|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254614|1.0569100|-0.3333869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335183|AY429526|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254614|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254614|1.0569100|-0.3333869	chr4	104059526	104059756	-	NA	NA	NA	NA	CENPE	NA	chr4:104049526-104071564	inner
LNCA_21_P0003775	5.957327	P	6.1251526	P	0.890183336443947	0	lncRNA	TCONS_00008588	NA	NA	NA	NA	XLOC_004093	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004093), lincRNA [TCONS_00008588]"	chr4:139202837-139202778	hs|4q28.3	Agilent_HUMAN_G3V2	TCONS_00008588	TCONS_00008588	chr4	139202778	139202837	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42944_PI429285431	0.90194	A	0.91696846	A	0.989637133681827	0	lncRNA	46064-1_{1..129}	ENST00000516649 ncrna:snoRNA chromosome:GRCh37:5:158657202:158657330:1 gene:ENSG00000252458 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516649 ncrna:snoRNA chromosome:GRCh37:5:158657202:158657330:1 gene:ENSG00000252458 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	158657202	158657330	+	ENSG00000252458	ENST00000516649	NA	NA	NA	NA	NA	inter
CUST_45223_PI429285431	8.528952	P	8.424688	P	1.07494586012171	0	lncRNA	49681-3_{6001..8447}	"gi|402169578|ref|NR_073119.1| Homo sapiens ubiquitin-conjugating enzyme E2W (putative) (UBE2W), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|402169578|ref|NR_073119.1| Homo sapiens ubiquitin-conjugating enzyme E2W (putative) (UBE2W), transcript variant 4, non-coding RNA"	Chr8	 74704455	 74706901	-	55284	NR_073119.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40"	NA	inter
CUST_44842_PI429285431	1.0564712	A	0.8970026	A	1.11687567408596	0	lncRNA	49370-1_{1..1869}	"gi|210033163|ref|NR_024277.1| Homo sapiens AGPAT4 intronic transcript 1 (non-protein coding) (AGPAT4-IT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|210033163|ref|NR_024277.1| Homo sapiens AGPAT4 intronic transcript 1 (non-protein coding) (AGPAT4-IT1), non-coding RNA"	Chr6	161581146	161583014	-	79992	NR_024277.1	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.20"	NA	inter
CUST_34673_PI429285431	1.2647249	A	1.4375937	A	0.887076973071338	0	lncRNA	36125-1_{1..516}	n341577|AY163163|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4048|NULL|2.2980600|-0.2282051	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341577|AY163163|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4048|NULL|2.2980600|-0.2282051	chr8	105080739	105081254	+	NA	NA	NA	NA	RIMS2	NA	chr8:105070739-105171076	inner
CUST_8784_PI429285431	13.168076	P	12.113207	P	2.07752955360881	0	lncRNA	10324-1_{1..632}	lnc-SERPINC1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:5	chr1	173837098	173837729	-	lnc-SERPINC1-1	lnc-SERPINC1-1:5	ENSG00000234741	GAS5	DARS2	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60chr1:173827098-173827682"	NA	inter
CUST_5481_PI429285431	5.0665746	P	4.3652344	P	1.62601458710286	0	lncRNA	5415-1_{1..580}	"transcript_id ""ENST00000562902.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562902.1"" | genecode_v17"	chr16	 29127448	 29128027	+	ENSG00000260517.1	ENST00000562902.1	RP11-426C22.5	RP11-426C22.5-001	NA	NA	NA	inter
CUST_42875_PI429285431	10.707227	P	10.52984	P	1.13083387032008	0	lncRNA	45945-1_{1..134}	ENST00000364642 ncrna:snoRNA chromosome:GRCh37:20:37058313:37058446:-1 gene:ENSG00000201512 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364642 ncrna:snoRNA chromosome:GRCh37:20:37058313:37058446:-1 gene:ENSG00000201512 gene_biotype:snoRNA transcript_biotype:snoRNA	chr20	 37058313	 37058446	-	ENSG00000201512	ENST00000364642	NA	NA	NA	NA	NA	inter
CUST_5160_PI429285431	1.607525	A	1.4991257	A	1.0780314744836	0	lncRNA	5100-1_{1..655}	"transcript_id ""ENST00000559034.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559034.1"" | genecode_v17"	chr15	 44679518	 44680172	-	ENSG00000259499.1	ENST00000559034.1	RP11-616K22.2	RP11-616K22.2-001	CASC4	NA	chr15:44669518-44692649	inner
CUST_213_PI429201921	0.8817568	A	0.8874593	A	0.996055129727684	0	lncRNA	168-2_{3001..5487}	TC0Y000334.hg.1	TCONS_l2_00031057-XLOC_l2_015958 // Broad TUCP // linc-DAZ4-1 chrY:-:25687555-25693043 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:25687555-25693043	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031057-XLOC_l2_015958	linc-DAZ4-1	chrY	 25687555	 25693043	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_106_PI429285431	2.290062	A	2.0692766	A	1.16536783749217	0	lncRNA	98-1_{1..607}	"transcript_id ""ENST00000419160.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419160.3"" | genecode_v17"	chr1	   322672	   323278	+	ENSG00000237094.6	ENST00000419160.3	RP4-669L17.10	RP4-669L17.10-004	LOC100288646	NA	chr1:327463-334955	inter
CUST_4238_PI429285431	6.104174	P	6.5790763	P	0.719515514291241	0	lncRNA	4196-1_{1..277}	"transcript_id ""ENST00000552063.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552063.1"" | genecode_v17"	chr12	 47642919	 47643195	+	ENSG00000258181.1	ENST00000552063.1	RP11-493L12.4	RP11-493L12.4-002	NA	NA	NA	inter
CUST_37361_PI429285431	1.439034	A	0.90824056	A	1.44472353268244	0	lncRNA	38465-1_{1..785}	n345809|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1358|NULL|-1.2710200|-0.2993194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345809|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1358|NULL|-1.2710200|-0.2993194	chr4	119771464	119772248	+	NA	NA	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-25.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-16.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40"	NA	inter
CUST_15521_PI429285431	0.89813423	A	1.1061344	A	0.865736463505578	0	lncRNA	17207-1_{1..389}	lnc-FAIM3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAIM3-2:1	chr1	207064847	207065235	-	lnc-FAIM3-2	lnc-FAIM3-2:1	XLOC_001173	linc-IL10	IL24	NA	chr1:207070788-207074884	inter
LNCA_21_P0007712	2.6512647	A	3.3825011	P	0.602387442207515	0	lncRNA	TCONS_00021327	NA	NA	NA	NA	XLOC_010097	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010097), lincRNA [TCONS_00021327]"	chr12:57478129-57478070	hs|12q13.3	Agilent_HUMAN_G3V2	TCONS_00021327	TCONS_00021327	chr12	 57478070	 57478129	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22142_PI429285431	1.0661583	A	0.8884581	A	1.13107939387547	0	lncRNA	23743-2_{3001..4443}	lnc-DDOST-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DDOST-1:1	chr1	 20977808	 20979250	-	lnc-DDOST-1	lnc-DDOST-1:1	ENSG00000117242.7	PINK1-AS	PINK1	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_PINK1:range=chr1:20960042-209771845'pad=0,hg19_refFlat_PINK1:range=chr1:20960042-209771845'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.00;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20chr1:20964808-20978004"	NA	inner
CUST_50778_PI429285431	1.4291624	A	1.3665189	A	1.04437765797732	0	lncRNA	54434-1_{1..672}	hg19_lincRNAsTranscripts_TCONS_l2_00004780 range=chr11:116510207-116528970 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004780 range=chr11:116510207-116528970 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	116510207	116510878	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21134_PI429285431	0.879213	A	1.0914092	A	0.863222156282752	0	lncRNA	22759-1_{1..1192}	lnc-HELT-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-HELT-2:3	chr4	185992722	185993913	+	lnc-HELT-2	lnc-HELT-2:3	ENSG00000250754.1	RP11-386B13.3	NA	NA	NA	inter
CUST_49769_PI429285431	7.595827	P	6.769923	P	1.77264543886308	0	lncRNA	53531-1_{1..336}	hg19_lincRNAsTranscripts_TCONS_l2_00026574 range=chr7:55774879-55780208 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026574 range=chr7:55774879-55780208 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 55774879	 55775214	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006418	0.88409275	A	0.88474286	A	0.999549479601252	0	lncRNA	ENST00000445233	NA	NA	NA	NA	XLOC_007947	NA	ENST00000445233	THC2732947	NA	"BROAD Institute lincRNA (XLOC_007947), lincRNA [TCONS_00016975]"	chrX:33871782-33960140	hs|Xp21.1	Agilent_HUMAN_G3V2	ENST00000445233	ENST00000445233	chrX	 33871782	 33960140	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46294_PI429285431	7.1474557	P	7.2023454	P	0.962668040239674	0	lncRNA	50527-1_{1..3000}	"gi|389565514|ref|NR_051979.1| Homo sapiens importin 4 (IPO4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|389565514|ref|NR_051979.1| Homo sapiens importin 4 (IPO4), transcript variant 2, non-coding RNA"	Chr14	 24649425	 24652424	-	79711	NR_051979.1	NA	NA	NA	NA	NA	inter
CUST_28081_PI429285431	2.7792132	A	3.774045	P	0.501794373723709	0	lncRNA	29701-1_{1..482}	n325350|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325400|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325400|-1.0138000|-0.5117047	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325350|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325400|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325400|-1.0138000|-0.5117047	chr2	 33005697	 33006178	+	NA	NA	NA	NA	TTC27	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20chr2:32995697-33016976"	NA	inner
CUST_39137_PI429285431	1.1246647	A	0.9009437	A	1.16774154549955	0	lncRNA	40113-1_{1..2687}	n385752|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dfa.1||0.3447930|-0.3480078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385752|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dfa.1||0.3447930|-0.3480078	chrX	 40671202	 40673888	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10"	NA	inter
CUST_28121_PI429285431	3.4877071	P	3.9913359	P	0.705330435761724	0	lncRNA	29744-1_{1..626}	n325395|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323836|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323836|-0.8711840|-0.2970017	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325395|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323836|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323836|-0.8711840|-0.2970017	chr2	 19108102	 19108727	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33745_PI429285431	0.905724	A	1.7462621	A	0.558435243615601	0	lncRNA	35302-1_{1..538}	n340524|AF086115|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2986|NULL|-1.3608300|-0.5444969	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340524|AF086115|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2986|NULL|-1.3608300|-0.5444969	chr5	 78916400	 78916937	-	NA	NA	NA	NA	PAPD4	NA	chr5:78908243-78926938	inner
CUST_16464_PI429285431	4.1877546	P	4.838492	P	0.636954665886945	0	lncRNA	18162-1_{1..672}	lnc-FTCD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FTCD-1:1	chr21	 47517386	 47518057	-	lnc-FTCD-1	lnc-FTCD-1:1	XLOC_014132	linc-SLC19A1-1	COL6A2	NA	chr21:47518033-47527444	inter
LNCA_21_P0002203	3.3270345	P	3.071248	P	1.19398647961443	0	lncRNA	TCONS_00003655	NA	NA	NA	NA	XLOC_001443	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001443), lincRNA [TCONS_00003655]"	chr2:42300346-42300405	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00003655	TCONS_00003655	chr2	 42300346	 42300405	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31969_PI429285431	2.3702712	A	1.023176	A	2.54399388002857	0	lncRNA	33692-1_{1..1870}	n338526|AK123745|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|924|NULL|-1.1341900|-0.5002657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338526|AK123745|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|924|NULL|-1.1341900|-0.5002657	chr1	217600339	217602208	-	NA	NA	NA	NA	GPATCH2	NA	chr1:217603834-217612209	inter
CUST_39353_PI429285431	0.904608	A	0.91225696	A	0.994712174969305	0	lncRNA	40318-2_{3001..6000}	n386440|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lal.1||1.1334400|-0.1965963	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386440|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lal.1||1.1334400|-0.1965963	chr7	 72336317	 72339316	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30"	NA	inter
CUST_45249_PI429285431	8.256251	P	7.3300786	P	1.9002278266982	0	lncRNA	49702-1_{1..704}	"gi|54312079|ref|NR_002182.1| Homo sapiens nascent-polypeptide-associated complex alpha polypeptide pseudogene 1 (NACAP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|54312079|ref|NR_002182.1| Homo sapiens nascent-polypeptide-associated complex alpha polypeptide pseudogene 1 (NACAP1), non-coding RNA"	Chr8	102381121	102381824	+	83955	NR_002182.1	NA	NA	NA	NA	NA	inter
LNCA_33_P3211793	7.33551	P	7.6530046	P	0.802462232947549	0	lncRNA	ENST00000538304	XR_132886	XR_132886	NA	Hs.434403	NA	NA	ENST00000538304	THC2535315	NA	"PREDICTED: Homo sapiens hypothetical LOC729732 (LOC729732), miscRNA [XR_132886]"	chr12:8543558-8543499	hs|12p13.31	Agilent_HUMAN_G3V2	ENST00000538304	ENST00000538304	chr12	  8543499	  8543558	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49371_PI429285431	0.906145	A	0.9112293	A	0.9964820343822	0	lncRNA	53184-1_{1..1458}	hg19_lincRNAsTranscripts_TCONS_l2_00022460 range=chr5:107114579-107117792 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022460 range=chr5:107114579-107117792 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	107114579	107116036	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51561_PI429285431	3.8785315	P	2.9065852	A	1.96148499621671	0	lncRNA	55125-1_{1..354}	hg19_lincRNAsTranscripts_TCONS_l2_00011125 range=chr17:18422815-18427203 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011125 range=chr17:18422815-18427203 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 18422815	 18423168	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21043_PI429285431	0.914149	A	0.92048746	A	0.995616151561253	0	lncRNA	22670-1_{1..321}	lnc-SHCBP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SHCBP1-2:1	chr16	 46695441	 46695761	-	lnc-SHCBP1-2	lnc-SHCBP1-2:1	ENSG00000261131.1	RP11-93O14.2	VPS35	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10chr16:46693589-46705503"	NA	inner
CUST_10719_PI429285431	1.6850424	A	1.2334399	A	1.36755845407245	0	lncRNA	12255-1_{1..1113}	lnc-HPCA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HPCA-1:1	chr1	 33399756	 33400868	+	lnc-HPCA-1	lnc-HPCA-1:1	XLOC_000133	linc-ADC	RNF19B	NA	chr1:33402050-33409878	inter
LNCA_21_P0006996	0.89562577	A	0.8906056	A	1.00348577792395	0	lncRNA	TCONS_00018516	NA	NA	NA	NA	XLOC_008825	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008825), lincRNA [TCONS_00018516]"	chr10:54703654-54698381	hs|10q21.1	Agilent_HUMAN_G3V2	TCONS_00018516	TCONS_00018516	chr10	 54698381	 54703654	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6217_PI429285431	2.8910255	P	3.2004077	P	0.80698725843146	0	lncRNA	6143-1_{1..740}	"transcript_id ""ENST00000586383.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586383.1"" | genecode_v17"	chr18	 56422091	 56422830	-	ENSG00000267501.1	ENST00000586383.1	RP11-108P20.2	RP11-108P20.2-001	MALT1	NA	chr18:56412091-56417370	inter
CUST_22402_PI429285431	0.9011258	A	0.89096904	A	1.00706496952771	0	lncRNA	23992-1_{1..3000}	lnc-TOR3A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TOR3A-1:1	chr1	179071526	179074525	+	lnc-TOR3A-1	lnc-TOR3A-1:1	ENSG00000228449.1	RP11-177A2.4	ABL2	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00chr1:179068462-179084885"	NA	inner
CUST_2160_PI429285431	0.8787849	A	0.88101506	A	0.998455365062219	0	lncRNA	2152-1_{1..735}	"transcript_id ""ENST00000504609.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504609.3"" | genecode_v17"	chr5	 53691181	 53691915	+	ENSG00000249069.3	ENST00000504609.3	RP11-461C13.1	RP11-461C13.1-002	NA	NA	NA	inter
CUST_38894_PI429285431	3.3284166	P	3.0239656	A	1.23494860307258	0	lncRNA	39881-1_{1..1060}	n384855|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003noh.1||-1.1474000|-0.3949960	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384855|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003noh.1||-1.1474000|-0.3949960	chr6	 29892368	 29893427	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27626_PI429285431	0.89887977	A	0.89679575	A	1.00144557642699	0	lncRNA	29204-1_{1..276}	n324830|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171680|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171680|-1.2694900|-0.4187943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324830|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171680|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171680|-1.2694900|-0.4187943	chr21	 28457791	 28458066	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16104_PI429285431	2.71296	A	2.7003438	A	1.00878323165473	0	lncRNA	17811-1_{1..2938}	lnc-KCNIP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-KCNIP1-1:1	chr5	169760138	169763075	+	lnc-KCNIP1-1	lnc-KCNIP1-1:1	XLOC_004628	linc-KCNIP1	NA	NA	NA	inter
CUST_28515_PI429285431	3.3523853	P	3.399841	P	0.967641332487422	0	lncRNA	30184-1_{1..389}	n325860|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050855|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050855|-0.9373430|-0.2426015	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325860|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050855|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050855|-0.9373430|-0.2426015	chr10	125663079	125663467	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34010_PI429285431	5.9418106	P	5.8237367	P	1.08528496263548	0	lncRNA	35547-1_{1..3000}	n340827|BX647262|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3291|NULL|-0.6889870|-0.2464559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340827|BX647262|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3291|NULL|-0.6889870|-0.2464559	chr6	  3905153	  3908152	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24996_PI429285431	1.722588	A	2.0469854	A	0.798631897649015	0	lncRNA	26537-1_{1..495}	lnc-ENPP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ENPP1-2:1	chr6	132398348	132398842	+	lnc-ENPP1-2	lnc-ENPP1-2:1	ENSG00000227220.1	RP11-69I8.3	NA	"hg19_refFlat_CTGF:range=chr6:132270404-1322723125'pad=0,hg19_refFlat_CTGF:range=chr6:132270404-1322723125'pad=0 3'pad=0 strand=- repeatMasking=none,-102.00"	NA	inter
CUST_34430_PI429285431	0.9109904	A	0.9309367	A	0.986269414733843	0	lncRNA	35910-1_{1..1299}	n341306|AF400040|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3775|NULL|-1.2275700|-0.3702261	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341306|AF400040|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3775|NULL|-1.2275700|-0.3702261	chr7	116712480	116713778	-	NA	NA	NA	NA	ST7	NA	chr7:116702480-116795612	inter
CUST_47012_PI429285431	0.90002507	A	0.90972966	A	0.993295864467468	0	lncRNA	51107-1_{1..2809}	"gi|338797745|ref|NR_040034.1| Homo sapiens uncharacterized LOC339298 (LOC339298), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338797745|ref|NR_040034.1| Homo sapiens uncharacterized LOC339298 (LOC339298), non-coding RNA"	Chr18	 73834953	 73837761	+	339298	NR_040034.1	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	inter
CUST_32463_PI429285431	0.92671657	A	0.99497604	A	0.953787995492468	0	lncRNA	34134-1_{1..1289}	n339065|AL117506|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1494|NULL|-1.0211800|-0.2815447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339065|AL117506|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1494|NULL|-1.0211800|-0.2815447	chr16	  8348493	  8349781	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51768_PI429285431	8.305976	P	8.801441	P	0.709333013688354	0	lncRNA	55319-1_{1..2298}	hg19_lincRNAsTranscripts_TCONS_l2_00012262 range=chr19:7837320-7850059 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012262 range=chr19:7837320-7850059 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	  7837320	  7839617	+	NA	NA	NA	NA	CLEC4M	NA	chr19:7827320-7834491	inter
CUST_32287_PI429285431	0.92235786	A	0.97706753	A	0.962788176468198	0	lncRNA	33971-2_{3001..3494}	n338864|AK128122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1288|NULL|-1.0842300|-0.3418699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338864|AK128122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1288|NULL|-1.0842300|-0.3418699	chr2	 66020172	 66020665	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36660_PI429285431	1.0431715	A	1.3073558	A	0.832669393047883	0	lncRNA	37851-1_{1..836}	n345156|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_705|NULL|-1.2903800|-0.3567939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345156|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_705|NULL|-1.2903800|-0.3567939	chr11	121987840	121988675	-	NA	NA	NA	NA	BLID	NA	chr11:121986062-121986923	inter
CUST_24107_PI429285431	2.4342299	A	2.0623655	A	1.29402402246847	0	lncRNA	25658-1_{1..396}	lnc-SIDT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SIDT1-1:1	chr3	113145564	113145959	+	lnc-SIDT1-1	lnc-SIDT1-1:1	ENSG00000243849.1	WDR52-AS1	WDR52	NA	chr3:113135564-113155893	inner
CUST_48240_PI429285431	2.5849888	A	1.5178276	A	2.09530636085863	0	lncRNA	52102-1_{1..475}	hg19_lincRNAsTranscripts_TCONS_l2_00001781 range=chr1:219268630-219347070 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001781 range=chr1:219268630-219347070 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	219268630	219269104	-	NA	NA	NA	NA	LYPLAL1	NA	chr1:219347192-219357070	inter
CUST_50751_PI429285431	0.906396	A	0.915822	A	0.993487692266713	0	lncRNA	54415-5_{12001..13763}	hg19_lincRNAsTranscripts_TCONS_l2_00003843 range=chr10:134309449-134331794 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003843 range=chr10:134309449-134331794 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	134321449	134323211	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
CUST_16524_PI429285431	0.89081466	A	0.9026934	A	0.991800089051245	0	lncRNA	18223-1_{1..424}	lnc-TMEM135-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM135-2:1	chr11	 87670646	 87671069	+	lnc-TMEM135-2	lnc-TMEM135-2:1	XLOC_009243	linc-TYR-4	NA	NA	NA	inter
CUST_9022_PI429285431	0.9017369	A	0.90850765	A	0.9953178692365	0	lncRNA	10549-1_{1..831}	lnc-MARCKS-5:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MARCKS-5:8	chr6	114320701	114321531	+	lnc-MARCKS-5	lnc-MARCKS-5:8	ENSG00000228624	RP3-399L15.3	NA	NA	NA	inter
CUST_24195_PI429285431	7.3350267	P	6.1232967	P	2.31615210456384	0	lncRNA	25746-1_{1..1498}	lnc-ANG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANG-1:1	chr14	 21167514	 21169011	+	lnc-ANG-1	lnc-ANG-1:1	ENSG00000259171.1	AL163636.6	RNASE4	NA	chr14:21157514-21168758	inner
CUST_12267_PI429285431	1.0339143	A	0.92619324	A	1.07752478928265	0	lncRNA	13876-1_{1..821}	lnc-BPHL-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BPHL-2:2	chr6	  3257560	  3258380	+	lnc-BPHL-2	lnc-BPHL-2:2	XLOC_005133	linc-PSMG4	PSMG4	NA	chr6:3259162-3267639	inter
CUST_297_PI429285431	4.7258463	P	4.901222	P	0.88553688163542	0	lncRNA	289-1_{1..671}	"transcript_id ""ENST00000420549.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420549.1"" | genecode_v17"	chr1	 82680904	 82681574	-	ENSG00000233290.1	ENST00000420549.1	RP11-147G16.1	RP11-147G16.1-001	NA	NA	NA	inter
CUST_25484_PI429285431	0.9024495	A	0.9088346	A	0.995583965419755	0	lncRNA	27014-1_{1..593}	lnc-MOCS2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MOCS2-2:1	chr5	 52083752	 52084344	-	lnc-MOCS2-2	lnc-MOCS2-2:1	ENSG00000248898.1	CTD-2288O8.1	ITGA1	NA	chr5:52084136-52093860	inner
CUST_35202_PI429285431	0.8845283	A	0.89173025	A	0.995020428043776	0	lncRNA	36603-1_{1..3000}	n342186|AL832760|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4676|NULL|0.2088130|-0.2242136	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342186|AL832760|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4676|NULL|0.2088130|-0.2242136	chr6	170723226	170726225	+	NA	NA	NA	NA	FAM120B	"hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-59.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00chr6:170713226-170714237"	NA	inter
CUST_7571_PI429285431	1.3325527	A	1.3919126	A	0.959689823428971	0	lncRNA	9206-1_{1..939}	lnc-DCTD-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DCTD-4:6	chr4	183064856	183065794	-	lnc-DCTD-4	lnc-DCTD-4:6	ENSG00000177822	AC108142.1	NA	NA	NA	inter
LNCA_21_P0002510	8.229338	P	8.336075	P	0.928686134230582	0	lncRNA	TCONS_00004464	NA	NA	NA	NA	XLOC_002342	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002342), lincRNA [TCONS_00004464]"	chr2:143628367-143628158	hs|2q22.2	Agilent_HUMAN_G3V2	TCONS_00004464	TCONS_00004464	chr2	143628158	143628367	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15401_PI429285431	5.0517206	P	5.660151	P	0.655909920139782	0	lncRNA	17086-1_{1..539}	lnc-FOXG1-6:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXG1-6:10	chr14	 27133246	 27133784	+	lnc-FOXG1-6	lnc-FOXG1-6:10	XLOC_010776	linc-FOXG1-5	NA	NA	NA	inter
CUST_16903_PI429285431	2.2681293	A	2.5650978	A	0.813960957010803	0	lncRNA	18613-1_{1..301}	lnc-SHH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SHH-1:1	chr7	155986490	155986790	-	lnc-SHH-1	lnc-SHH-1:1	XLOC_006669	linc-SHH-5	NA	NA	NA	inter
CUST_28665_PI429285431	2.091056	A	2.3266332	A	0.849345121290375	0	lncRNA	30357-1_{1..432}	n326044|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047267|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047267|-0.9817590|-0.3215488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326044|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047267|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047267|-0.9817590|-0.3215488	chr10	 26906610	 26907041	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12377_PI429285431	5.154478	P	5.7088647	P	0.680946471954238	0	lncRNA	13989-1_{1..706}	lnc-C10orf122-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf122-1:10	chr10	127398067	127398772	-	lnc-C10orf122-1	lnc-C10orf122-1:10	XLOC_008982	linc-C10orf122-2	C10orf137	NA	chr10:127408084-127408158	inter
LNCA_21_P0010676	4.4131365	P	4.567779	P	0.898354957768203	0	lncRNA	TCONS_l2_00001813	NA	NA	NA	NA	XLOC_l2_001331	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001331), lincRNA [TCONS_l2_00001813]"	chr1:224218435-224204522	hs|1q42.11	Agilent_HUMAN_G3V2	TCONS_l2_00001813	TCONS_l2_00001813	chr1	224204522	224218435	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006757	0.91749454	A	0.8993658	A	1.01264516748801	0	lncRNA	ENST00000454672	NA	NA	NA	NA	XLOC_008809	NA	ENST00000454672	NA	NA	"BROAD Institute lincRNA (XLOC_008809), lincRNA [TCONS_00017974]"	chr10:48324847-48324788	hs|10q11.22	Agilent_HUMAN_G3V2	ENST00000454672	ENST00000454672	chr10	 48324788	 48324847	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12201_PI429285431	5.069261	P	5.4606185	P	0.76241187746582	0	lncRNA	13800-1_{1..484}	lnc-CEBPB-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEBPB-1:6	chr20	 48792818	 48793301	+	lnc-CEBPB-1	lnc-CEBPB-1:6	XLOC_013559	linc-CEBPB-1	NA	NA	NA	inter
CUST_48965_PI429285431	0.91246575	A	0.90215594	A	1.00717181086639	0	lncRNA	52804-1_{1..569}	hg19_lincRNAsTranscripts_TCONS_l2_00019672 range=chr3:193719994-193721570 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019672 range=chr3:193719994-193721570 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	193719994	193720562	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17646_PI429285431	0.8968185	A	0.88935274	A	1.00518828326352	0	lncRNA	19375-1_{1..2214}	lnc-RP11-625H11.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-625H11.1.1-1:2	chr15	 62936716	 62938929	-	lnc-RP11-625H11.1.1-1	lnc-RP11-625H11.1.1-1:2	XLOC_011495	linc-C2CD4B-5	TLN2	NA	chr15:62939510-62947380	inter
CUST_38289_PI429285431	1.0873945	A	0.88591653	A	1.14987574286003	0	lncRNA	39343-1_{1..3000}	n381928|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tkz.2||-0.7173540|-0.2756519	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381928|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tkz.2||-0.7173540|-0.2756519	chr12	105151947	105154946	+	NA	NA	NA	NA	CHST11	NA	chr12:105141947-105155792	inner
CUST_2994_PI429285431	4.6539454	P	4.8950467	P	0.846099184975398	0	lncRNA	2974-1_{1..564}	"transcript_id ""ENST00000523747.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523747.1"" | genecode_v17"	chr8	  9047015	  9047578	+	ENSG00000248538.2	ENST00000523747.1	RP11-10A14.5	RP11-10A14.5-002	NA	NA	NA	inter
LNCA_21_P0012920	2.8214293	A	2.7646384	A	1.0401494993699	0	lncRNA	TCONS_l2_00023043	NA	NA	NA	NA	XLOC_l2_012168	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012168), lincRNA [TCONS_l2_00023043]"	chr5:104078903-104078844	hs|5q21.2	Agilent_HUMAN_G3V2	TCONS_l2_00023043	TCONS_l2_00023043	chr5	104078844	104078903	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36919_PI429285431	0.89864105	A	0.8929487	A	1.00395343062412	0	lncRNA	38077-1_{1..2886}	n345391|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_940|NULL|-1.2679300|-0.3325506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345391|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_940|NULL|-1.2679300|-0.3325506	chr21	 19289536	 19292421	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_6731_PI429285431	1.8731909	A	2.3111248	A	0.738191023785898	0	lncRNA	6679-1_{1..1005}	"transcript_id ""ENST00000596828.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596828.1"" | genecode_v17"	chr20	 54039908	 54040912	+	ENSG00000235166.2	ENST00000596828.1	RP5-1010E17.1	RP5-1010E17.1-004	NA	NA	NA	inter
LNCA_21_P0010812	4.527609	P	3.334251	P	2.28684407321443	0	lncRNA	XR_109026	XR_109026	XR_109026	NA	NA	LOC645954	supervillin pseudogene	NA	NA	NA	"PREDICTED: Homo sapiens supervillin pseudogene (LOC645954), miscRNA [XR_109026]"	chr10:30978376-30980007	hs|10p11.23	Agilent_HUMAN_G3V2	XR_109026	XR_109026	chr10	 30978376	 30980007	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24558_PI429285431	0.9046173	A	1.3278568	A	0.745748202342467	0	lncRNA	26107-1_{1..558}	lnc-CEP120-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CEP120-2:1	chr5	124070311	124070868	-	lnc-CEP120-2	lnc-CEP120-2:1	ENSG00000251456.1	RP11-436H11.5	ZNF608	NA	chr5:124060311-124080805	inner
CUST_30425_PI429285431	5.613389	P	6.3413982	P	0.603736445731393	0	lncRNA	32205-1_{1..455}	n335560|CR450308|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267217|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267217|1.2195700|-0.1219034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335560|CR450308|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267217|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267217|1.2195700|-0.1219034	chr19	 56160413	 56160867	+	NA	NA	NA	NA	CCDC106	NA	chr19:56158954-56164527	inner
CUST_33515_PI429285431	0.89472127	A	1.3482627	A	0.73024808254322	0	lncRNA	35085-1_{1..3000}	n340253|L10123|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2714|NULL|11.2326000|-0.3322200	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340253|L10123|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2714|NULL|11.2326000|-0.3322200	chr4	147947072	147950071	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12145_PI429285431	0.89490485	A	1.4536715	A	0.678882287483019	0	lncRNA	13744-1_{1..2132}	lnc-WDR27-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR27-1:5	chr6	169830736	169832867	-	lnc-WDR27-1	lnc-WDR27-1:5	XLOC_005939	linc-THBS2-3	NA	NA	NA	inter
LNCA_21_P0013655	7.0619426	P	6.5912304	P	1.38579340925346	0	lncRNA	TCONS_l2_00029359	NA	NA	NA	NA	XLOC_l2_015213	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015213), lincRNA [TCONS_l2_00029359]"	chr9:68429126-68427890	hs|9q13	Agilent_HUMAN_G3V2	TCONS_l2_00029359	TCONS_l2_00029359	chr9	 68427890	 68429126	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16574_PI429285431	4.315847	P	4.4772997	P	0.894124292528164	0	lncRNA	18275-1_{1..1896}	lnc-C1orf21-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf21-1:1	chr1	184634403	184636298	+	lnc-C1orf21-1	lnc-C1orf21-1:1	XLOC_000492	linc-RNF2-2	NA	NA	NA	inter
CUST_14479_PI429285431	0.8889469	A	2.9485793	A	0.239877142957918	0	lncRNA	16143-2_{3001..4525}	lnc-LRPAP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-LRPAP1-3:1	chr4	  3764872	  3766396	-	lnc-LRPAP1-3	lnc-LRPAP1-3:1	XLOC_003862	linc-LRPAP1-2	ADRA2C	NA	chr4:3768296-3770253	inter
CUST_44914_PI429285431	3.7127118	P	2.866922	A	1.79724837588794	0	lncRNA	49430-1_{1..3000}	"gi|213385306|ref|NR_024466.1| Homo sapiens LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) (LSM5), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|213385306|ref|NR_024466.1| Homo sapiens LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) (LSM5), transcript variant 4, non-coding RNA"	Chr7	 32524945	 32527944	-	23658	NR_024466.1	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.99;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70"	NA	inter
CUST_21900_PI429285431	0.8863678	A	0.91361237	A	0.981292698064571	0	lncRNA	23509-1_{1..457}	lnc-MMRN1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MMRN1-2:3	chr4	 90581365	 90581821	+	lnc-MMRN1-2	lnc-MMRN1-2:3	ENSG00000251095.1	RP11-115D19.1	NA	NA	NA	inter
LNCA_21_P0003254	0.8875647	A	0.88697505	A	1.00040879777006	0	lncRNA	TCONS_00007007	NA	NA	NA	NA	XLOC_002878	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002878), lincRNA [TCONS_00007007]"	chr3:152369751-152376294	hs|3q25.2	Agilent_HUMAN_G3V2	TCONS_00007007	TCONS_00007007	chr3	152369751	152376294	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005693	7.1800995	P	7.428813	P	0.841646605484981	0	lncRNA	ENST00000521660	NA	NA	NA	NA	XLOC_006790	NA	ENST00000521660	THC2729916	NA	"BROAD Institute lincRNA (XLOC_006790), lincRNA [TCONS_00014691]"	chr8:49536369-49536428	hs|8q11.21	Agilent_HUMAN_G3V2	ENST00000521660	ENST00000521660	chr8	 49536369	 49536428	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21866_PI429285431	13.252069	P	13.087123	P	1.12112411362616	0	lncRNA	23476-1_{1..546}	lnc-AC108463.1-3:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AC108463.1-3:13	chr2	112237746	112238291	-	lnc-AC108463.1-3	lnc-AC108463.1-3:13	ENSG00000172965.6	AC068491.1	NA	NA	NA	inter
LNCA_21_P0003025	0.8885231	A	0.88795626	A	1.00039298074454	0	lncRNA	TCONS_00006199	NA	NA	NA	NA	XLOC_002795	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002795), lincRNA [TCONS_00006199]"	chr3:125934251-125934310	hs|3q21.3	Agilent_HUMAN_G3V2	TCONS_00006199	TCONS_00006199	chr3	125934251	125934310	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11441_PI429285431	0.90178466	A	1.0944321	A	0.8749985674043	0	lncRNA	13009-1_{1..1516}	lnc-ADAMTS19-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAMTS19-2:1	chr5	128728344	128729859	+	lnc-ADAMTS19-2	lnc-ADAMTS19-2:1	XLOC_004545	linc-ADAMTS19	NA	NA	NA	inter
CUST_6767_PI429285431	4.432101	P	4.955848	P	0.695562953417702	0	lncRNA	6714-1_{1..700}	"transcript_id ""ENST00000400178.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000400178.2"" | genecode_v17"	chr21	 17443434	 17444133	+	ENSG00000215386.6	ENST00000400178.2	LINC00478	LINC00478-004	NA	NA	NA	inter
CUST_20966_PI429285431	4.801963	P	3.362585	P	2.71203914090206	0	lncRNA	22596-2_{3001..3566}	lnc-AP000552.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP000552.1-2:1	chr22	 21549011	 21549576	+	lnc-AP000552.1-2	lnc-AP000552.1-2:1	ENSG00000215498.4	KB-1183D5.11	NA	NA	NA	inter
CUST_38419_PI429285431	4.265074	P	5.0554276	P	0.57820235901137	0	lncRNA	39449-1_{1..1608}	n382507|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zol.2||-0.8905700|-0.1429795	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382507|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zol.2||-0.8905700|-0.1429795	chr15	 42100588	 42102195	+	NA	NA	NA	NA	MAPKBP1	"hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80chr15:42090588-42112741"	NA	inter
CUST_17678_PI429285431	2.789585	A	3.2594147	P	0.72204982563306	0	lncRNA	19407-1_{1..1047}	lnc-PLEKHA5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLEKHA5-1:1	chr12	 19706237	 19707283	+	lnc-PLEKHA5-1	lnc-PLEKHA5-1:1	XLOC_009681	linc-PDE3A-5	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60"	NA	inter
CUST_24944_PI429285431	3.6170058	P	3.3523853	P	1.20132000150899	0	lncRNA	26484-1_{1..441}	lnc-PAQR9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PAQR9-1:1	chr3	143033082	143033522	-	lnc-PAQR9-1	lnc-PAQR9-1:1	ENSG00000240888.1	RP13-635I23.3	SLC9A9	NA	chr3:143023082-143043271	inner
CUST_20872_PI429285431	1.2485535	A	1.0006601	A	1.18747192113775	0	lncRNA	22503-1_{1..545}	lnc-C2orf42-3:26	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:26	chr2	 70313256	 70313800	-	lnc-C2orf42-3	lnc-C2orf42-3:26	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_33453_PI429285431	0.8826496	A	0.883447	A	0.99944743715733	0	lncRNA	35029-1_{1..3000}	n340187|BX647987|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2648|NULL|0.2216690|-0.3667064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340187|BX647987|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2648|NULL|0.2216690|-0.3667064	chr4	100010010	100013009	+	NA	NA	NA	NA	ADH5	"hg19_refFlat_ADH1C:range=chr4:100257909-1002738325'pad=0,hg19_refFlat_ADH1C:range=chr4:100257909-1002738325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ADH1B:range=chr4:100228997-1002424885'pad=0,hg19_refFlat_ADH1B:range=chr4:100228997-1002424885'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_ADH1A:range=chr4:100197781-1002120715'pad=0,hg19_refFlat_ADH1A:range=chr4:100197781-1002120715'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70chr4:100000010-100009931"	NA	inner
CUST_7524_PI429285431	0.89691997	A	0.9058849	A	0.993805251114438	0	lncRNA	9163-1_{1..957}	lnc-SOD3-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOD3-6:3	chr4	 23042313	 23043269	+	lnc-SOD3-6	lnc-SOD3-6:3	ENSG00000248837	RP11-412P11.1	NA	NA	NA	inter
CUST_10739_PI429285431	3.6180475	P	3.7958496	P	0.884048791102588	0	lncRNA	12275-1_{1..325}	lnc-BCL2L13-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BCL2L13-1:2	chr22	 18261019	 18261343	+	lnc-BCL2L13-1	lnc-BCL2L13-1:2	XLOC_014144	linc-PEX26-2	BID	NA	chr22:18251019-18257258	inter
CUST_40381_PI429285431	6.9450836	P	6.6168985	P	1.2554330549483	0	lncRNA	41175-2_{3001..3347}	n409206|NR_033372|lncRNA|Homosapiens||RefGeneNoncode|NR_033372||2.8653700|-0.2694396	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409206|NR_033372|lncRNA|Homosapiens||RefGeneNoncode|NR_033372||2.8653700|-0.2694396	chr18	 54817292	 54817638	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_46705_PI429285431	4.060758	P	4.2981696	P	0.848265857457202	0	lncRNA	50864-1_{1..3000}	"gi|115430106|ref|NR_003226.1| Homo sapiens AFG3 ATPase family gene 3-like 1 (S. cerevisiae), pseudogene (AFG3L1P), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|115430106|ref|NR_003226.1| Homo sapiens AFG3 ATPase family gene 3-like 1 (S. cerevisiae), pseudogene (AFG3L1P), transcript variant 1, non-coding RNA"	Chr16	 90038988	 90041987	+	172	NR_003226.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004636	6.211883	P	6.162012	P	1.0351723587456	0	lncRNA	ENST00000451285	NA	BC044856	NA	Hs.434413	XLOC_005184	NA	ENST00000451285	NA	NA	"BROAD Institute lincRNA (XLOC_005184), lincRNA [TCONS_00011271]"	chr6:15999906-15999965	hs|6p22.3	Agilent_HUMAN_G3V2	ENST00000451285	ENST00000451285	chr6	 15999906	 15999965	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45537_PI429285431	3.0684247	P	1.6339779	A	2.70278508703768	0	lncRNA	49942-1_{1..3000}	"gi|409168317|ref|NR_073196.1| Homo sapiens acyl-CoA binding domain containing 5 (ACBD5), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|409168317|ref|NR_073196.1| Homo sapiens acyl-CoA binding domain containing 5 (ACBD5), transcript variant 6, non-coding RNA"	Chr10	 27484143	 27487142	-	91452	NR_073196.1	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50"	NA	inter
CUST_51361_PI429285431	5.5928583	P	5.332654	P	1.19764829154847	0	lncRNA	54957-1_{1..799}	hg19_lincRNAsTranscripts_TCONS_l2_00009249 range=chr15:85070011-85113965 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009249 range=chr15:85070011-85113965 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 85070011	 85070809	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3295009	8.172609	P	8.342622	P	0.888834671918276	0	lncRNA	ENST00000445938	XR_108774	XR_108774	NA	Hs.413238	NA	NA	ENST00000445938	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506936, transcript variant 1 (LOC100506936), miscRNA [XR_108774]"	chr7:44104960-44105019	hs|7p13	Agilent_HUMAN_G3V2	ENST00000445938	ENST00000445938	chr7	 44104960	 44105019	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008396	0.88928854	A	0.88996106	A	0.999533953291651	0	lncRNA	TCONS_00022640	NA	NA	NA	NA	XLOC_010942	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010942), lincRNA [TCONS_00022640]"	chr14:103585449-103586404	hs|14q32.32	Agilent_HUMAN_G3V2	TCONS_00022640	TCONS_00022640	chr14	103585449	103586404	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001316	1.6510941	A	1.9553055	A	0.809884791454274	0	lncRNA	TCONS_00000975	NA	NA	NA	NA	XLOC_000246	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000246), lincRNA [TCONS_00000975]"	chr1:71252112-71252171	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_00000975	TCONS_00000975	chr1	 71252112	 71252171	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18924_PI429285431	3.645009	P	4.2108197	P	0.675575680602957	0	lncRNA	20615-1_{1..552}	lnc-GLRX3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLRX3-1:1	chr10	131984687	131985238	+	lnc-GLRX3-1	lnc-GLRX3-1:1	ENSG00000203417	RP11-500G10.5	GLRX3	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr10:131974687-131978646"	NA	inter
CUST_47626_PI429285431	4.4383326	P	4.93521	P	0.708638915720186	0	lncRNA	51617-2_{3001..3992}	"gi|372620357|ref|NR_046009.1| Homo sapiens zinc finger, matrin-type 1 (ZMAT1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372620357|ref|NR_046009.1| Homo sapiens zinc finger, matrin-type 1 (ZMAT1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_046009.1	NA	NA	NA	NA	NA	Unknown
CUST_37715_PI429285431	6.9470096	P	6.7266293	P	1.16504065522307	0	lncRNA	38813-1_{1..522}	n346217|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1767|NULL|-1.2972600|-0.1154572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346217|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1767|NULL|-1.2972600|-0.1154572	chr9	141069238	141069759	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36655_PI429285431	0.8933257	A	0.90927935	A	0.989002689927678	0	lncRNA	37846-1_{1..1247}	n345151|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_700|NULL|-1.3276100|-0.3314648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345151|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_700|NULL|-1.3276100|-0.3314648	chr11	107183056	107184302	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28131_PI429285431	0.89790785	A	0.89907944	A	0.999188245345946	0	lncRNA	29755-1_{1..432}	n325406|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323750|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323750|-1.1345400|-0.3789860	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325406|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323750|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323750|-1.1345400|-0.3789860	chr2	 16399933	 16400364	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33367_PI429285431	1.4270099	A	1.5595106	A	0.912248829618995	0	lncRNA	34947-1_{1..2106}	n340085|AK091781|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2540|NULL|0.1787780|-0.2981337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340085|AK091781|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2540|NULL|0.1787780|-0.2981337	chr10	 79012866	 79014971	+	NA	NA	NA	NA	KCNMA1	"hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80chr10:79002866-79024970"	NA	inner
CUST_39796_PI429285431	6.4547157	P	6.3755517	P	1.05640570664702	0	lncRNA	40706-1_{1..1518}	n406191|NR_003613|lncRNA|Homosapiens||RefGeneNoncode|NR_003613||2.8310100|-0.1526288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406191|NR_003613|lncRNA|Homosapiens||RefGeneNoncode|NR_003613||2.8310100|-0.1526288	chr7	 99918262	 99919779	-	NA	NA	NA	NA	SPDYE3	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_AIMP2:range=chr7:6048995-60633225'pad=0,hg19_refFlat_AIMP2:range=chr7:6048995-60633225'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00chr7:99908262-99919819"	NA	inter
CUST_4581_PI429285431	2.9100032	A	2.9925423	A	0.944394077988209	0	lncRNA	4530-1_{1..448}	"transcript_id ""ENST00000420694.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420694.1"" | genecode_v17"	chr13	 30993656	 30994103	-	ENSG00000225039.1	ENST00000420694.1	RP11-223E19.2	RP11-223E19.2-001	NA	NA	NA	inter
LNCA_21_P0005244	0.90813243	A	0.9253911	A	0.988108471344186	0	lncRNA	XR_133457	XR_133457	XR_133457	NA	Hs.679608	LOC100505913	uncharacterized LOC100505913	ENST00000422448	THC2757526	NA	"PREDICTED: Homo sapiens hypothetical LOC100505913, transcript variant 2 (LOC100505913), miscRNA [XR_133457]"	chr7:85118293-85118352	hs|7q21.11	Agilent_HUMAN_G3V2	XR_133457	XR_133457	chr7	 85118293	 85118352	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47618_PI429285431	0.9818232	A	1.6059042	A	0.648832953771593	0	lncRNA	51611-3_{6001..6580}	"gi|371940889|ref|NR_045864.1| Homo sapiens armadillo repeat containing, X-linked 4 (ARMCX4), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|371940889|ref|NR_045864.1| Homo sapiens armadillo repeat containing, X-linked 4 (ARMCX4), transcript variant 3, non-coding RNA"	NW_004070883.1	   172929	   173508	+	100131755	NR_045864.1	NA	NA	NA	NA	NA	Unknown
CUST_25775_PI429285431	1.1150035	A	0.90077335	A	1.16008470553292	0	lncRNA	27300-1_{1..351}	lnc-TMEM126B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM126B-2:1	chr11	 84511574	 84511924	+	lnc-TMEM126B-2	lnc-TMEM126B-2:1	ENSG00000254787.1	CTD-2537O9.1	DLG2	NA	chr11:84501574-84521744	inner
LNCA_21_P0007969	0.906736	A	0.92142934	A	0.989867040702069	0	lncRNA	XR_110304	XR_110304	XR_110304	NA	NA	LINC00403	long intergenic non-protein coding RNA 403	ENST00000421423	THC2653037	NA	"PREDICTED: Homo sapiens hypothetical LOC100505996 (LOC100505996), miscRNA [XR_110304]"	chr13:112762270-112762329	hs|13q34	Agilent_HUMAN_G3V2	XR_110304	XR_110304	chr13	112762270	112762329	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10768_PI429285431	0.90985143	A	0.9132463	A	0.997649621905417	0	lncRNA	12304-1_{1..1368}	lnc-BRMS1L-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BRMS1L-3:2	chr14	 36684580	 36685947	+	lnc-BRMS1L-3	lnc-BRMS1L-3:2	XLOC_010797	linc-PAX9-5	NA	NA	NA	inter
CUST_10814_PI429285431	1.4216647	A	1.6749259	A	0.838997722780651	0	lncRNA	12349-1_{1..276}	lnc-CRISPLD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRISPLD1-1:1	chr8	 76048733	 76049008	+	lnc-CRISPLD1-1	lnc-CRISPLD1-1:1	XLOC_006848	linc-HNF4G	NA	NA	NA	inter
LNCA_33_P3363445	1.7365477	A	0.9168751	A	1.76500540317979	0	lncRNA	ENST00000422961	XR_109907	XR_109907	NA	NA	NA	NA	ENST00000422961	THC2606758	NA	"PREDICTED: Homo sapiens hypothetical LOC100506014, transcript variant 1 (LOC100506014), miscRNA [XR_109907]"	chr2:3579467-3579408	hs|2p25.3	Agilent_HUMAN_G3V2	ENST00000422961	ENST00000422961	chr2	  3579408	  3579467	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7521_PI429285431	2.8184357	A	2.5692098	A	1.18856919896769	0	lncRNA	9160-1_{1..712}	lnc-ENPP1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENPP1-1:3	chr6	132228546	132229257	+	lnc-ENPP1-1	lnc-ENPP1-1:3	ENSG00000236673	RP11-69I8.2	NA	NA	NA	inter
CUST_52027_PI429285431	0.901154	A	0.9193559	A	0.987462659915247	0	lncRNA	55557-1_{1..1957}	hg19_lincRNAsTranscripts_TCONS_l2_00017154 range=chr21:16767795-16776189 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017154 range=chr21:16767795-16776189 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 16767795	 16769751	-	NA	NA	NA	NA	LOC100652984	NA	chr21:16757795-16767376	inter
LNCA_21_P0001789	0.8969375	A	0.9060882	A	0.993677291074066	0	lncRNA	ENST00000416111	NA	BC038779	NA	Hs.385770	XLOC_002117	NA	ENST00000416111	THC2608039	NA	"BROAD Institute lincRNA (XLOC_002117), lincRNA [TCONS_00002753]"	chr2:62839066-62839007	hs|2p15	Agilent_HUMAN_G3V2	ENST00000416111	ENST00000416111	chr2	 62839007	 62839066	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6423_PI429285431	5.0273986	P	5.31706	P	0.818094042401054	0	lncRNA	6362-1_{1..1570}	"transcript_id ""ENST00000567877.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567877.1"" | genecode_v17"	chr19	 28909390	 28910959	-	ENSG00000260725.1	ENST00000567877.1	AC005307.1	AC005307.1-001	NA	NA	NA	inter
CUST_36067_PI429285431	0.91824317	A	0.9050247	A	1.00920444798518	0	lncRNA	37376-2_{3001..6000}	n344659|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_208|NULL|-1.3129200|-0.4214645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n344659|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_208|NULL|-1.3129200|-0.4214645	chr1	 23610825	 23613824	-	NA	NA	NA	NA	HNRNPR	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20chr1:23636276-23646128"	NA	inter
LNCA_21_P0011521	7.652198	P	7.5746136	P	1.05524968599454	0	lncRNA	TCONS_l2_00010602	NA	NA	NA	NA	XLOC_l2_005692	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005692), lincRNA [TCONS_l2_00010602]"	chr17:19497759-19497818	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00010602	TCONS_l2_00010602	chr17	 19497759	 19497818	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43781_PI429285431	0.89031506	A	1.7301024	A	0.558725921781754	0	lncRNA	48512-2_{3001..3242}	"gi|213417729|ref|NR_024468.1| Homo sapiens uncharacterized LOC730811 (LOC730811), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|213417729|ref|NR_024468.1| Homo sapiens uncharacterized LOC730811 (LOC730811), non-coding RNA"	Chr2	  2326004	  2326245	+	730811	NR_024468.1	NA	NA	NA	NA	NA	inter
CUST_15040_PI429285431	1.3880174	A	2.8583028	A	0.360910894907159	0	lncRNA	16703-1_{1..387}	lnc-ZNF608-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF608-5:1	chr5	124331662	124332048	-	lnc-ZNF608-5	lnc-ZNF608-5:1	XLOC_004983	linc-ZNF608-4	NA	NA	NA	inter
CUST_10763_PI429285431	1.1007619	A	0.92972547	A	1.12586701544189	0	lncRNA	12299-1_{1..499}	lnc-ITIH2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITIH2-1:1	chr10	  7589039	  7589537	+	lnc-ITIH2-1	lnc-ITIH2-1:1	XLOC_008379	linc-ITIH2-1	NA	NA	NA	inter
LNCA_21_P0012251	0.8897003	A	2.1813505	A	0.408483525642562	0	lncRNA	THC2506559	NA	NA	NA	NA	XLOC_l2_009303	NA	NA	THC2506559	NA	"BROAD Institute lincRNA (XLOC_l2_009303), lincRNA [TCONS_l2_00017605]"	chr22:020381876-020381935	hs|22q11.21	Agilent_HUMAN_G3V2	THC2506559	THC2506559	chr22	 20381876	 20381935	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18582_PI429285431	1.4050077	A	1.3182659	A	1.06196910823604	0	lncRNA	20289-1_{1..1693}	lnc-FAM182A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM182A-3:1	chr20	 25847622	 25849314	+	lnc-FAM182A-3	lnc-FAM182A-3:1	ENSG00000238157	RP13-401N8.4	LOC100289375	NA	chr20:25837622-25848100	inter
CUST_38341_PI429285431	5.397503	P	5.5514894	P	0.898763599037279	0	lncRNA	39387-1_{1..2647}	n382070|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vif.1||0.5342460|-0.1879329	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382070|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vif.1||0.5342460|-0.1879329	chr13	 64311567	 64314213	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1609_PI429285431	4.671652	P	4.975904	P	0.809862000178962	0	lncRNA	1595-1_{1..494}	"transcript_id ""ENST00000438488.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438488.1"" | genecode_v17"	chr3	191286324	191286817	+	ENSG00000223812.1	ENST00000438488.1	RP11-197K6.1	RP11-197K6.1-002	NA	NA	NA	inter
CUST_35118_PI429285431	0.90321124	A	0.8963646	A	1.00475700802018	0	lncRNA	36523-1_{1..1012}	n342086|BC033941|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4568|NULL|-1.3529200|-0.3745062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342086|BC033941|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4568|NULL|-1.3529200|-0.3745062	chr6	 93097558	 93098569	-	NA	NA	NA	NA	NA	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10"	NA	inter
CUST_13861_PI429285431	6.3790884	P	6.0833745	P	1.22749223651772	0	lncRNA	15505-1_{1..2622}	lnc-SLC9A7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC9A7-1:1	chrX	 46461622	 46464243	-	lnc-SLC9A7-1	lnc-SLC9A7-1:1	XLOC_008152	linc-ZNF674	SLC9A7	NA	chrX:46466373-46471839	inner
CUST_41510_PI429285431	9.981359	P	10.402031	P	0.747076558805204	0	lncRNA	42736-1_{1..80}	ENST00000583964 ncrna:miRNA chromosome:GRCh37:6:44221943:44222022:-1 gene:ENSG00000265700 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583964 ncrna:miRNA chromosome:GRCh37:6:44221943:44222022:-1 gene:ENSG00000265700 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 44221943	 44222022	-	ENSG00000265700	ENST00000583964	NA	NA	HSP90AB1	NA	chr6:44214849-44221614	inter
CUST_41316_PI429285431	0.8933113	A	1.3913448	A	0.708071277196463	0	lncRNA	42347-1_{1..98}	ENST00000385205 ncrna:miRNA chromosome:GRCh37:3:111831648:111831745:1 gene:ENSG00000207940 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385205 ncrna:miRNA chromosome:GRCh37:3:111831648:111831745:1 gene:ENSG00000207940 gene_biotype:miRNA transcript_biotype:miRNA	chr3	111831648	111831745	+	ENSG00000207940	ENST00000385205	NA	NA	C3orf52	NA	chr3:111821648-111837073	inner
CUST_18585_PI429285431	2.5806985	A	2.383275	A	1.14664873257799	0	lncRNA	20292-1_{1..780}	lnc-INTS9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-INTS9-1:1	chr8	 28558877	 28559656	-	lnc-INTS9-1	lnc-INTS9-1:1	ENSG00000246339	CTD-2172A10.1	EXTL3	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-24.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80chr8:28559153-28568981"	NA	inter
LNCA_21_P0011028	6.6993017	P	8.2972	P	0.330357888534954	0	lncRNA	THC2603794	NA	NA	NA	NA	XLOC_l2_002502	NA	NA	THC2603794	NA	"BROAD Institute lincRNA (XLOC_l2_002502), lincRNA [TCONS_l2_00005340]"	chr11:123330742-123330801	hs|11q24.1	Agilent_HUMAN_G3V2	THC2603794	THC2603794	chr11	123330742	123330801	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002305	0.88391674	A	0.8843867	A	0.999674301602267	0	lncRNA	TCONS_00003915	NA	NA	NA	NA	XLOC_001719	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001719), lincRNA [TCONS_00003915]"	chr2:157906468-157906527	hs|2q24.1	Agilent_HUMAN_G3V2	TCONS_00003915	TCONS_00003915	chr2	157906468	157906527	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2668_PI429285431	0.8888355	A	0.8806329	A	1.00570180281437	0	lncRNA	2654-1_{1..378}	"transcript_id ""ENST00000446392.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446392.1"" | genecode_v17"	chr6	149882288	149882665	+	ENSG00000235168.1	ENST00000446392.1	RP1-12G14.5	RP1-12G14.5-001	C6orf72	NA	chr6:149887528-149895085	inter
CUST_14376_PI429285431	0.8761023	A	0.87835866	A	0.998437232822009	0	lncRNA	16037-1_{1..660}	lnc-GPCPD1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPCPD1-1:8	chr20	  5484944	  5485603	-	lnc-GPCPD1-1	lnc-GPCPD1-1:8	XLOC_013643	linc-PROKR2-4	NA	NA	NA	inter
CUST_24052_PI429285431	6.6128826	P	6.485185	P	1.09254870846849	0	lncRNA	25604-1_{1..1225}	lnc-AMY1C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AMY1C-1:1	chr1	104619367	104620591	+	lnc-AMY1C-1	lnc-AMY1C-1:1	ENSG00000215869.3	RP11-364B6.1	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00"	NA	inter
CUST_36672_PI429285431	1.124083	A	2.1335926	A	0.49671506209988	0	lncRNA	37858-1_{1..665}	n345163|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_712|NULL|-1.2909900|-0.2500129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345163|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_712|NULL|-1.2909900|-0.2500129	chr12	  1655208	  1655872	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80"	NA	inter
CUST_19489_PI429285431	2.5254827	A	2.0281754	A	1.41157648300751	0	lncRNA	21145-1_{1..426}	lnc-CLN5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLN5-1:1	chr13	 77655060	 77655485	+	lnc-CLN5-1	lnc-CLN5-1:1	ENSG00000229521.1	MYCBP2-AS2	MYCBP2	NA	chr13:77645060-77665325	inner
LNCA_21_P0011690	3.1487107	P	3.2785044	P	0.913962134055541	0	lncRNA	ENST00000453968	NA	NA	NA	NA	XLOC_l2_006704	NA	ENST00000453968	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006704), lincRNA [TCONS_l2_00012483]"	chr19:36092335-36092394	hs|19q13.12	Agilent_HUMAN_G3V2	ENST00000453968	ENST00000453968	chr19	 36092335	 36092394	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48448_PI429285431	1.2744892	A	0.88764787	A	1.30752753657549	0	lncRNA	52302-1_{1..276}	hg19_lincRNAsTranscripts_TCONS_l2_00000748 range=chr1:200926335-200926877 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000748 range=chr1:200926335-200926877 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	200926335	200926610	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13508_PI429285431	1.298333	A	0.90969	A	1.30916142636424	0	lncRNA	15148-1_{1..476}	lnc-CDK17-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK17-3:1	chr12	 97416652	 97417127	-	lnc-CDK17-3	lnc-CDK17-3:1	XLOC_010165	linc-CDK17-2	NA	NA	NA	inter
LNCA_21_P0010916	3.636888	P	4.74179	P	0.464934052471246	0	lncRNA	ENST00000436077	NA	NA	NA	NA	XLOC_l2_001548	NA	ENST00000436077	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001548), lincRNA [TCONS_l2_00003937]"	chr10:37530102-37530161	hs|10p11.21	Agilent_HUMAN_G3V2	ENST00000436077	ENST00000436077	chr10	 37530102	 37530161	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9330_PI429285431	4.0102544	P	3.3776488	A	1.55036252091608	0	lncRNA	10838-2_{3001..3524}	lnc-SLC12A8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC12A8-1:1	chr3	124801078	124801601	-	lnc-SLC12A8-1	lnc-SLC12A8-1:1	XLOC_003228	linc-HEG1	SLC12A8	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40chr3:124801480-124808378"	NA	inter
CUST_324_PI429285431	0.88249564	A	0.88115823	A	1.00092745178843	0	lncRNA	315-1_{1..602}	"transcript_id ""ENST00000438093.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438093.1"" | genecode_v17"	chr1	 95816807	 95817408	-	ENSG00000230434.1	ENST00000438093.1	RP11-14O19.1	RP11-14O19.1-001	NA	NA	NA	inter
CUST_28693_PI429285431	2.6858213	A	2.2889287	A	1.31666890030164	0	lncRNA	30391-2_{3001..3070}	n326080|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046670|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046670|-0.0742789|-0.3280015	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326080|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046670|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046670|-0.0742789|-0.3280015	chr10	  6864565	  6864634	+	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20"	NA	inter
CUST_22660_PI429285431	2.3304024	A	0.8868562	A	2.71988602957372	0	lncRNA	24244-1_{1..435}	lnc-RP11-148O21.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-148O21.3.1-1:1	chr8	 11411639	 11412073	-	lnc-RP11-148O21.3.1-1	lnc-RP11-148O21.3.1-1:1	ENSG00000254774.1	RP11-148O21.3	BLK	NA	chr8:11401639-11421716	inner
CUST_48001_PI429285431	2.5491202	A	3.3866293	P	0.559608933991589	0	lncRNA	51886-1_{1..1800}	"gi|410173189|ref|XR_172143.1| PREDICTED: Homo sapiens uncharacterized LOC100996332 (LOC100996332), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410173189|ref|XR_172143.1| PREDICTED: Homo sapiens uncharacterized LOC100996332 (LOC100996332), misc_RNA"	NA	NA	NA	NA	NA	XR_172143.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30"	NA	Unknown
CUST_51938_PI429285431	7.088127	P	7.2436666	P	0.897796514234419	0	lncRNA	55479-1_{1..224}	hg19_lincRNAsTranscripts_TCONS_l2_00016480 range=chr20:11247568-11254034 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016480 range=chr20:11247568-11254034 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	 11247568	 11247791	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51527_PI429285431	3.6015522	P	3.7976456	P	0.872911077087851	0	lncRNA	55098-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00011139 range=chr17:20432533-20460098 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011139 range=chr17:20432533-20460098 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 20438533	 20441532	-	NA	NA	NA	NA	CDRT15L2	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70chr17:20422533-20470098"	NA	inter
CUST_152_PI429201921	0.92828894	A	0.90213865	A	1.01829127278772	0	lncRNA	132-1_{...	TC6_mcf_hap5000192.hg.1	TCONS_00029978-XLOC_014463 // Rinn lincRNAs // linc-GPR158-2 chr6_mcf_hap5:-:130806-134856 // chr6_mcf_hap5 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6_mcf_hap5:-:130806-134856	NA	Affy_HUMAN_HTA2.0	TCONS_00029978-XLOC_014463	linc-GPR158-2	chr6_mcf_hap5	   130806	   134856	-	NA	NA	NA	NA	PRDM16	NA	chr1:2985742-2994333	Unknown
CUST_28635_PI429285431	0.88510895	A	0.89518213	A	0.993042122583731	0	lncRNA	30323-1_{1..1524}	n326009|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047660|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047660|-0.0617736|-0.3094573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326009|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047660|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047660|-0.0617736|-0.3094573	chr10	 38973918	 38975441	-	NA	NA	NA	NA	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00"	NA	inter
CUST_38106_PI429285431	1.0955236	A	0.9156987	A	1.13274639544159	0	lncRNA	39180-1_{1..2095}	n381165|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001dqe.1||-0.0536533|-0.4174423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381165|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001dqe.1||-0.0536533|-0.4174423	chr1	 94317792	 94319886	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010396	3.319069	P	3.7006223	P	0.767610685619239	0	lncRNA	TCONS_00029527	NA	NA	NA	NA	XLOC_014172	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014172), lincRNA [TCONS_00029527]"	chr22:23838783-23838842	hs|22q11.23	Agilent_HUMAN_G3V2	TCONS_00029527	TCONS_00029527	chr22	 23838783	 23838842	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40887_PI429285431	4.1393013	P	4.5817204	P	0.735899622673785	0	lncRNA	41578-1_{1..3000}	n410696|NR_037946|lncRNA|Homosapiens||RefGeneNoncode|NR_037946||14.2831000|-0.0655742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410696|NR_037946|lncRNA|Homosapiens||RefGeneNoncode|NR_037946||14.2831000|-0.0655742	chr11	 62457733	 62460732	-	NA	NA	NA	NA	TTC9C	NA	chr11:62495952-62504856	inner
LNCA_19_P00317639	0.8916551	A	0.89168215	A	0.999981250544539	0	lncRNA	TCONS_l2_00028399	NA	NA	NA	NA	XLOC_l2_014645	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014645), lincRNA [TCONS_l2_00028399]"	chr8:126934733-126934674	hs|8q24.13	Agilent_HUMAN_G3V2	TCONS_l2_00028399	TCONS_l2_00028399	chr8	126934674	126934733	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18389_PI429285431	0.8972705	A	0.99204	A	0.936421848000047	0	lncRNA	20115-1_{1..3000}	lnc-RP11-890B15.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-890B15.2.1-1:1	chr11	130735365	130738364	-	lnc-RP11-890B15.2.1-1	lnc-RP11-890B15.2.1-1:1	ENSG00000255455	RP11-890B15.3	SNX19	NA	chr11:130745766-130747889	inter
LNCA_21_P0001011	0.89502436	A	3.3200865	P	0.186201662608729	0	lncRNA	ENST00000425124	NA	NA	NA	NA	XLOC_000379	NA	ENST00000425124	THC2575153	NA	"BROAD Institute lincRNA (XLOC_000379), lincRNA [TCONS_00000294]"	chr1:143189463-143189522	hs|1q21.1	Agilent_HUMAN_G3V2	ENST00000425124	ENST00000425124	chr1	143189463	143189522	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42021_PI429285431	5.4180093	P	5.2824864	P	1.09849088599618	0	lncRNA	43889-1_{1..86}	ENST00000401111 ncrna:miRNA chromosome:GRCh37:1:117637265:117637350:1 gene:ENSG00000215930 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401111 ncrna:miRNA chromosome:GRCh37:1:117637265:117637350:1 gene:ENSG00000215930 gene_biotype:miRNA transcript_biotype:miRNA	chr1	117637265	117637350	+	ENSG00000215930	ENST00000401111	NA	NA	TTF2	NA	chr1:117627265-117645492	inner
CUST_22775_PI429285431	3.5304823	P	3.3428574	P	1.13888722860608	0	lncRNA	24355-1_{1..365}	lnc-RARS-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RARS-3:1	chr5	168422494	168422858	+	lnc-RARS-3	lnc-RARS-3:1	ENSG00000248965.1	CTB-174D11.2	SLIT3	NA	chr5:168412494-168432682	inner
CUST_44254_PI429285431	9.734297	P	8.886712	P	1.79948615199735	0	lncRNA	48899-1_{1..3000}	"gi|188536049|ref|NR_023350.1| Homo sapiens coatomer protein complex, subunit beta 2 (beta prime) (COPB2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|188536049|ref|NR_023350.1| Homo sapiens coatomer protein complex, subunit beta 2 (beta prime) (COPB2), transcript variant 2, non-coding RNA"	Chr3	139076433	139079432	-	9276	NR_023350.1	NA	NA	NA	NA	NA	inter
CUST_16361_PI429285431	4.6757507	P	5.1051974	P	0.74254651091382	0	lncRNA	18059-1_{1..586}	lnc-TCFL5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCFL5-2:2	chr20	 61423254	 61423839	-	lnc-TCFL5-2	lnc-TCFL5-2:2	XLOC_013838	linc-GATA5-4	C20orf20	NA	chr20:61427805-61431945	inter
CUST_51520_PI429285431	2.084522	A	1.5192909	A	1.47962450586137	0	lncRNA	55093-1_{1..337}	hg19_lincRNAsTranscripts_TCONS_l2_00009915 range=chr16:90288600-90289029 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009915 range=chr16:90288600-90289029 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 90288600	 90288936	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32687_PI429285431	0.91096133	A	1.0487347	A	0.90892088574915	0	lncRNA	34335-1_{1..3000}	n339316|CR627169|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1748|NULL|-0.7688600|-0.1675337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339316|CR627169|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1748|NULL|-0.7688600|-0.1675337	chr16	 86115014	 86118013	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0,hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.00;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90"	NA	inter
LNCA_21_P0007107	0.89861846	A	0.92206436	A	0.983879883021948	0	lncRNA	ENST00000427247	NA	NA	NA	NA	XLOC_008844	NA	ENST00000427247	NA	NA	"BROAD Institute lincRNA (XLOC_008844), lincRNA [TCONS_00018946]"	chr10:71767525-71767381	hs|10q22.1	Agilent_HUMAN_G3V2	ENST00000427247	ENST00000427247	chr10	 71767381	 71767525	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45789_PI429285431	5.7152867	P	5.868851	P	0.899026595448222	0	lncRNA	50129-1_{1..2586}	"gi|224586891|ref|NR_026952.1| Homo sapiens SEC14-like 1 pseudogene 1 (SEC14L1P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224586891|ref|NR_026952.1| Homo sapiens SEC14-like 1 pseudogene 1 (SEC14L1P1), non-coding RNA"	Chr11	 43918853	 43921438	+	729799	NR_026952.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008151	4.000545	P	4.5470676	P	0.68466843164338	0	lncRNA	TCONS_00021985	NA	NA	NA	NA	XLOC_010587	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010587), lincRNA [TCONS_00021985]"	chr13:44946178-44946119	hs|13q14.11	Agilent_HUMAN_G3V2	TCONS_00021985	TCONS_00021985	chr13	 44946119	 44946178	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7556_PI429285431	7.044343	P	7.1197433	P	0.949078746555083	0	lncRNA	9192-1_{1..682}	lnc-TAF12-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TAF12-1:9	chr1	 28908102	 28908783	-	lnc-TAF12-1	lnc-TAF12-1:9	ENSG00000197989	SNHG12	TRNAU1AP	NA	chr1:28898102-28905057	inter
CUST_50049_PI429285431	4.46537	P	4.51504	P	0.966157301090499	0	lncRNA	53785-1_{1..416}	hg19_lincRNAsTranscripts_TCONS_l2_00027752 range=chr8:49293766-49294938 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027752 range=chr8:49293766-49294938 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 49293766	 49294181	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002537	4.649449	P	4.913285	P	0.832870442994557	0	lncRNA	TCONS_00004570	NA	NA	NA	NA	XLOC_002477	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002477), lincRNA [TCONS_00004570]"	chr2:214101803-214101744	hs|2q34	Agilent_HUMAN_G3V2	TCONS_00004570	TCONS_00004570	chr2	214101744	214101803	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49691_PI429285431	0.906453	A	1.1547997	A	0.84186061829741	0	lncRNA	53468-1_{1..1376}	hg19_lincRNAsTranscripts_TCONS_l2_00025624 range=chr7:5879455-5894694 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025624 range=chr7:5879455-5894694 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  5879455	  5880830	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49185_PI429285431	0.91326773	A	0.9180604	A	0.996683486124353	0	lncRNA	53009-1_{1..939}	hg19_lincRNAsTranscripts_TCONS_l2_00021337 range=chr4:147027065-147035058 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021337 range=chr4:147027065-147035058 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	147027065	147028003	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33823_PI429285431	2.891385	A	3.12324	A	0.85153928854643	0	lncRNA	35371-1_{1..1798}	n340609|AK000103|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3071|NULL|4.1567200|-0.2303759	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340609|AK000103|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3071|NULL|4.1567200|-0.2303759	chr5	126203405	126205202	-	NA	NA	NA	NA	3-Mar	NA	chr5:126203406-126215155	inner
CUST_7365_PI429285431	4.001131	P	3.9509852	P	1.03536955389071	0	lncRNA	9010-2_{3001..3395}	lnc-RP11-173D9.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-173D9.3.1-1:1	chr14	 35582776	 35583170	+	lnc-RP11-173D9.3.1-1	lnc-RP11-173D9.3.1-1:1	ENSG00000247658	ENST00000502168	PPP2R3C	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40chr14:35569776-35589932"	NA	inner
CUST_21849_PI429285431	0.889989	A	0.9011869	A	0.992268252116219	0	lncRNA	23459-1_{1..578}	lnc-SLC13A4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC13A4-1:2	chr7	135413863	135414440	-	lnc-SLC13A4-1	lnc-SLC13A4-1:2	ENSG00000239652.1	AC091736.10	SLC13A4	NA	chr7:135403863-135412933	inter
CUST_42097_PI429285431	2.0771487	A	1.286439	A	1.72992524950298	0	lncRNA	44040-1_{1..68}	ENST00000384980 ncrna:miRNA chromosome:GRCh37:12:7072862:7072929:1 gene:ENSG00000207713 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384980 ncrna:miRNA chromosome:GRCh37:12:7072862:7072929:1 gene:ENSG00000207713 gene_biotype:miRNA transcript_biotype:miRNA	chr12	  7072862	  7072929	+	ENSG00000207713	ENST00000384980	NA	NA	PHB2	NA	chr12:7074515-7079916	inter
LNCA_21_P0004505	0.906487	A	0.9872556	A	0.945553765982884	0	lncRNA	TCONS_00010701	NA	NA	NA	NA	XLOC_004405	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004405), lincRNA [TCONS_00010701]"	chr5:61051705-61051764	hs|5q12.1	Agilent_HUMAN_G3V2	TCONS_00010701	TCONS_00010701	chr5	 61051705	 61051764	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29_PI429201921	0.9036588	A	0.91190636	A	0.994299536691715	0	lncRNA	30-1_{1..1052}	TC09001992.hg.1	TCONS_00015687-XLOC_007389 // Rinn lincRNAs // linc-PGM5-2 chr9:+:70922308-70923361 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:+:70922308-70923361	NA	Affy_HUMAN_HTA2.0	TCONS_00015687-XLOC_007389	linc-PGM5-2	chr9	 70922308	 70923361	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49486_PI429285431	1.095701	A	0.9861645	A	1.07888156452739	0	lncRNA	53278-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00024007 range=chr6:6710959-6733623 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024007 range=chr6:6710959-6733623 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	  6710959	  6713958	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
CUST_16618_PI429285431	0.8931743	A	0.90030575	A	0.995069052771939	0	lncRNA	18318-1_{1..306}	lnc-PCDH9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH9-2:1	chr13	 68157228	 68157533	-	lnc-PCDH9-2	lnc-PCDH9-2:1	XLOC_010648	linc-PCDH9-4	NA	NA	NA	inter
CUST_37836_PI429285431	8.480011	P	8.845428	P	0.776244475025957	0	lncRNA	38927-1_{1..685}	n346359|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1909|NULL|-1.5258700|-0.3966819	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n346359|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1909|NULL|-1.5258700|-0.3966819	chr13	 44716495	 44717179	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43885_PI429285431	0.89006376	A	0.8939371	A	0.997318806137717	0	lncRNA	48604-1_{1..1753}	"gi|211971010|ref|NR_015424.1| Homo sapiens ankyrin repeat domain 36B pseudogene 2 (ANKRD36BP2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|211971010|ref|NR_015424.1| Homo sapiens ankyrin repeat domain 36B pseudogene 2 (ANKRD36BP2), non-coding RNA"	Chr2	 89065419	 89067171	+	645784	NR_015424.1	NA	NA	NA	NA	NA	inter
CUST_25179_PI429285431	2.6440477	A	3.6825008	P	0.486849207968058	0	lncRNA	26710-1_{1..1376}	lnc-ADAM23-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAM23-2:1	chr2	207513385	207514760	+	lnc-ADAM23-2	lnc-ADAM23-2:1	ENSG00000235118.3	AC010731.4	DYTN	NA	chr2:207516345-207524173	inner
CUST_3531_PI429285431	0.88545346	A	0.8877007	A	0.998443544465209	0	lncRNA	3500-1_{1..1299}	"transcript_id ""ENST00000450938.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450938.1"" | genecode_v17"	chr9	120410884	120412182	+	ENSG00000233569.1	ENST00000450938.1	RP11-500B12.1	RP11-500B12.1-001	NA	NA	NA	inter
CUST_47252_PI429285431	1.9025927	A	3.0435855	P	0.453447427462727	0	lncRNA	51324-1_{1..555}	"gi|345842490|ref|NR_045115.1| Homo sapiens myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 pseudogene 1 (MLLT10P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|345842490|ref|NR_045115.1| Homo sapiens myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 pseudogene 1 (MLLT10P1), non-coding RNA"	NA	NA	NA	NA	NA	NR_045115.1	NA	NA	NA	NA	NA	Unknown
CUST_41595_PI429285431	3.231822	P	3.614125	P	0.767211898476845	0	lncRNA	42932-1_{1..81}	ENST00000385199 ncrna:miRNA chromosome:GRCh37:14:101506556:101506636:1 gene:ENSG00000207934 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385199 ncrna:miRNA chromosome:GRCh37:14:101506556:101506636:1 gene:ENSG00000207934 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101506556	101506636	+	ENSG00000207934	ENST00000385199	NA	NA	NA	NA	NA	inter
LNCA_21_P0008262	0.89200765	A	0.8993234	A	0.994941943779473	0	lncRNA	TCONS_00022303	NA	NA	NA	NA	XLOC_010681	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010681), lincRNA [TCONS_00022303]"	chr13:86205918-86205859	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00022303	TCONS_00022303	chr13	 86205859	 86205918	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23103_PI429285431	0.8928894	A	2.5062943	A	0.326826098786717	0	lncRNA	24674-1_{1..571}	lnc-ZSWIM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZSWIM2-1:1	chr2	187559884	187560454	-	lnc-ZSWIM2-1	lnc-ZSWIM2-1:1	ENSG00000227227.1	AC017101.10	FAM171B	"hg19_refFlat_ITGAV:range=chr2:187465062-1875420195'pad=0,hg19_refFlat_ITGAV:range=chr2:187465062-1875420195'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ITGAV:range=chr2:187455066-1875420195'pad=0,hg19_refFlat_ITGAV:range=chr2:187455066-1875420195'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30chr2:187558789-187570014"	NA	inner
CUST_17975_PI429285431	1.0283787	A	0.91637146	A	1.08073082554974	0	lncRNA	19707-1_{1..933}	lnc-BASP1-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BASP1-3:6	chr5	 17441578	 17442510	+	lnc-BASP1-3	lnc-BASP1-3:6	XLOC_004308	linc-PRDM9-8	NA	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10"	NA	inter
CUST_28463_PI429285431	1.4777368	A	0.90839905	A	1.48384227617949	0	lncRNA	30128-1_{1..552}	n325796|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044155|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044155|-1.0921300|-0.3500281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325796|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044155|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044155|-1.0921300|-0.3500281	chr13	 22970934	 22971485	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28956_PI429285431	1.044439	A	0.904175	A	1.10210677288676	0	lncRNA	30676-1_{1..695}	n326385|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099546|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099546|-0.6513140|-0.2711382	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326385|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099546|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099546|-0.6513140|-0.2711382	chr1	147551268	147551962	+	NA	NA	NA	NA	NBPF24	"hg19_refFlat_RNF115:range=chr1:145611240-1456882205'pad=0,hg19_refFlat_RNF115:range=chr1:145611240-1456882205'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80chr1:147552869-147563730"	NA	inter
CUST_26772_PI429285431	0.90322405	A	0.9109477	A	0.994660678896257	0	lncRNA	28271-1_{1..469}	n323824|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057955|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057955|-1.3955300|-0.3253791	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323824|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057955|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057955|-1.3955300|-0.3253791	chrX	112746244	112746712	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011353	3.5805748	P	3.5318663	P	1.03433856981028	0	lncRNA	TCONS_l2_00008931	NA	NA	NA	NA	XLOC_l2_004844	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004844), lincRNA [TCONS_l2_00008931]"	chr15:23191521-23185274	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00008931	TCONS_l2_00008931	chr15	 23185274	 23191521	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40075_PI429285431	1.9267969	A	1.556126	A	1.29295395639276	0	lncRNA	40922-1_{1..1630}	n407343|NR_026806|lncRNA|Homosapiens||RefGeneNoncode|NR_026806||-1.1870800|-0.0916786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407343|NR_026806|lncRNA|Homosapiens||RefGeneNoncode|NR_026806||-1.1870800|-0.0916786	chr12	 31477249	 31478878	+	NA	NA	NA	NA	FAM60A	NA	chr12:31467249-31479159	inner
CUST_48285_PI429285431	4.3225946	P	4.7529097	P	0.742099685118635	0	lncRNA	52145-1_{1..699}	hg19_lincRNAsTranscripts_TCONS_l2_00001057 range=chr1:16957916-16959275 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001057 range=chr1:16957916-16959275 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 16957916	 16958614	-	NA	NA	NA	NA	NA	"hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90"	NA	inter
CUST_211_PI429285431	2.5378828	A	0.8958397	A	3.12107516030975	0	lncRNA	201-1_{1..596}	"transcript_id ""ENST00000413901.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413901.1"" | genecode_v17"	chr1	 37728340	 37728935	-	ENSG00000223944.1	ENST00000413901.1	RP5-1180C18.1	RP5-1180C18.1-001	NA	NA	NA	inter
CUST_31091_PI429285431	7.073856	P	7.24687	P	0.88698769772808	0	lncRNA	32882-1_{1..382}	n337370|DQ655920|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393033|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393033|-0.9213970|-0.0785167	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337370|DQ655920|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393033|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393033|-0.9213970|-0.0785167	chrX	123094639	123095020	-	NA	NA	NA	NA	STAG2	"hg19_refFlat_STAG2:range=chrX:123156478-1232344475'pad=0,hg19_refFlat_STAG2:range=chrX:123156478-1232344475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80chrX:123094475-123174898"	NA	inner
CUST_44029_PI429285431	0.8905451	A	1.9255402	A	0.488017537898402	0	lncRNA	48713-1_{1..1102}	"gi|387528002|ref|NR_048567.1| Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 1C (PPP1R1C), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387528002|ref|NR_048567.1| Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 1C (PPP1R1C), transcript variant 5, non-coding RNA"	Chr2	182818968	182820069	+	151242	NR_048567.1	NA	NA	NA	NA	NA	inter
CUST_3112_PI429285431	0.8908124	A	0.8972674	A	0.995535729561619	0	lncRNA	3091-1_{1..554}	"transcript_id ""ENST00000521483.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521483.1"" | genecode_v17"	chr8	 57432718	 57433271	-	ENSG00000246430.2	ENST00000521483.1	RP11-16M8.2	RP11-16M8.2-006	NA	NA	NA	inter
CUST_51879_PI429285431	0.9002798	A	0.90985143	A	0.993387411676241	0	lncRNA	55430-1_{1..933}	hg19_lincRNAsTranscripts_TCONS_l2_00012685 range=chr19:53700311-53722541 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012685 range=chr19:53700311-53722541 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 53700311	 53701243	+	NA	NA	NA	NA	ZNF665	NA	chr19:53690311-53696619	inter
LNCA_19_P00320759	4.856424	P	4.839465	P	1.0118244455446	0	lncRNA	XR_108575	XR_108575	XR_108575	NA	Hs.535791	FLJ32255	uncharacterized LOC643977	NA	THC2604473	NA	"PREDICTED: Homo sapiens hypothetical LOC643977 (FLJ32255), miscRNA [XR_108575]"	chr5:42991004-42990945	hs|5p12	Agilent_HUMAN_G3V2	XR_108575	XR_108575	chr5	 42990945	 42991004	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24722_PI429285431	7.056093	P	7.247567	P	0.875710551551006	0	lncRNA	26268-1_{1..557}	lnc-GPER-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPER-3:1	chr7	  1200298	  1200854	+	lnc-GPER-3	lnc-GPER-3:1	ENSG00000229043.1	AC091729.9	ZFAND2A	NA	chr7:1192543-1199855	inter
CUST_17097_PI429285431	0.8944935	A	0.9067986	A	0.991507025447636	0	lncRNA	18805-1_{1..314}	lnc-ELAVL4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELAVL4-1:1	chr1	 50723593	 50723906	+	lnc-ELAVL4-1	lnc-ELAVL4-1:1	XLOC_000184	linc-CDKN2C-5	NA	NA	NA	inter
LNCA_21_P0005846	9.723014	P	9.665865	P	1.04040771316868	0	lncRNA	TCONS_00015025	NA	NA	NA	NA	XLOC_007102	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007102), lincRNA [TCONS_00015025]"	chr8:65309242-65309183	hs|8q12.3	Agilent_HUMAN_G3V2	TCONS_00015025	TCONS_00015025	chr8	 65309183	 65309242	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29279_PI429285431	0.90330875	A	0.9051939	A	0.998694166935527	0	lncRNA	31030-1_{1..486}	n332389|AM990330|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500214|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500214|2.4331700|-0.2636688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332389|AM990330|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500214|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500214|2.4331700|-0.2636688	chr1	 67648590	 67649075	+	NA	NA	NA	NA	IL23R	NA	chr1:67638590-67725662	inner
LNCA_21_P0010093	4.254419	P	4.12427	P	1.09440672457957	0	lncRNA	TCONS_00028560	NA	NA	NA	NA	XLOC_013547	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013547), lincRNA [TCONS_00028560]"	chr20:46700315-46700374	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028560	TCONS_00028560	chr20	 46700315	 46700374	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11963_PI429285431	0.9088775	A	0.8943684	A	1.01010768275331	0	lncRNA	13541-1_{1..511}	lnc-AIMP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AIMP1-1:1	chr4	107374383	107374893	+	lnc-AIMP1-1	lnc-AIMP1-1:1	XLOC_003636	linc-SGMS2-3	NA	NA	NA	inter
CUST_7454_PI429285431	0.8798318	A	0.87891686	A	1.00063438922116	0	lncRNA	9097-1_{1..357}	lnc-TRAF5-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRAF5-5:2	chr1	211827386	211827742	+	lnc-TRAF5-5	lnc-TRAF5-5:2	ENSG00000227764	RP11-354K1.1	NEK2	NA	chr1:211831598-211837518	inter
CUST_2133_PI429285431	11.71637	P	11.602663	P	1.08200487554155	0	lncRNA	2124-1_{1..917}	"transcript_id ""ENST00000511579.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511579.1"" | genecode_v17"	chr5	 33519721	 33520637	-	ENSG00000250583.1	ENST00000511579.1	CTD-2233C11.2	CTD-2233C11.2-001	ADAMTS12	NA	chr5:33527286-33532335	inter
LNCA_21_P0005771	5.335198	P	5.621389	P	0.820064334780837	0	lncRNA	TCONS_00014873	NA	NA	NA	NA	XLOC_006941	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006941), lincRNA [TCONS_00014873]"	chr8:141476014-141476073	hs|8q24.3	Agilent_HUMAN_G3V2	TCONS_00014873	TCONS_00014873	chr8	141476014	141476073	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001401	5.3691874	P	5.9275413	P	0.679076541114866	0	lncRNA	TCONS_00001225	NA	NA	NA	NA	XLOC_000502	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000502), lincRNA [TCONS_00001225]"	chr1:189118936-189118995	hs|1q31.1	Agilent_HUMAN_G3V2	TCONS_00001225	TCONS_00001225	chr1	189118936	189118995	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005576	0.8870953	A	0.8973167	A	0.992940104389629	0	lncRNA	TCONS_00014215	NA	NA	NA	NA	XLOC_006254	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006254), lincRNA [TCONS_00014215]"	chr7:132344143-132344202	hs|7q32.3	Agilent_HUMAN_G3V2	TCONS_00014215	TCONS_00014215	chr7	132344143	132344202	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35068_PI429285431	0.8868366	A	0.89125067	A	0.996945075631407	0	lncRNA	36478-1_{1..1724}	n342019|BC038793|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4500|NULL|-1.2102400|-0.3582300	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342019|BC038793|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4500|NULL|-1.2102400|-0.3582300	chr12	110435223	110436946	-	NA	NA	NA	NA	GIT2	NA	chr12:110425223-110434194	inner
CUST_19247_PI429285431	4.3295856	P	5.182222	P	0.553771840840164	0	lncRNA	20916-1_{1..558}	lnc-MFNG-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MFNG-2:1	chr22	 37823333	 37823890	-	lnc-MFNG-2	lnc-MFNG-2:1	ENSG00000243902.1	RP1-63G5.5	ELFN2	NA	chr22:37813333-37823505	inner
CUST_45265_PI429285431	0.8871283	A	0.8876432	A	0.999643162198488	0	lncRNA	49716-1_{1..3000}	"gi|397139295|ref|XR_108886.3| PREDICTED: Homo sapiens uncharacterized LOC100507056 (LOC100507056), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139295|ref|XR_108886.3| PREDICTED: Homo sapiens uncharacterized LOC100507056 (LOC100507056), misc_RNA"	Chr8	128219629	128222628	-	100507056	XR_108886.4	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60"	NA	inter
CUST_4928_PI429285431	1.2236862	A	0.91031086	A	1.24261152483364	0	lncRNA	4871-1_{1..768}	"transcript_id ""ENST00000553346.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553346.1"" | genecode_v17"	chr14	 86481030	 86481797	-	ENSG00000258912.1	ENST00000553346.1	RP11-1079H9.1	RP11-1079H9.1-001	NA	NA	NA	inter
LNCA_21_P0014710	0.89028275	A	2.0305839	A	0.453664869191638	0	lncRNA	ENST00000413602	XR_112376	XR_112376	NA	Hs.670673	LOC100507959	NA	ENST00000413602	THC2607416	NA	"PREDICTED: Homo sapiens hypothetical LOC100507959 (LOC100507959), miscRNA [XR_112376]"	chr2:120244371-120244430	hs|2q14.2	Agilent_HUMAN_G3V2	ENST00000413602	ENST00000413602	chr2	120244371	120244430	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49772_PI429285431	3.2709875	P	3.4230747	P	0.89994753313009	0	lncRNA	53533-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00025878 range=chr7:55808105-55816936 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025878 range=chr7:55808105-55816936 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 55811105	 55814104	+	NA	NA	NA	NA	LOC100128326	NA	chr7:55810070-55815779	inter
LNCA_33_P3224055	7.372881	P	7.1156855	P	1.19515314941447	0	lncRNA	XR_108479	XR_108479	XR_108479	100132481	Hs.673212	LOC100132481	uncharacterized LOC100132481	NA	THC2491050	NA	"PREDICTED: Homo sapiens hypothetical LOC100132481 (LOC100132481), miscRNA [XR_108479]"	chr3:126426717-126426776	hs|3q21.3	Agilent_HUMAN_G3V2	XR_108479	XR_108479	chr3	126426717	126426776	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3248004	2.815468	A	2.9040668	A	0.940435692520403	0	lncRNA	XR_109047	XR_109047	XR_109047	   399886	Hs.559970	FLJ41423	uncharacterized LOC399886	NA	THC2486628	NA	"PREDICTED: Homo sapiens hypothetical LOC399886 (FLJ41423), miscRNA [XR_109047]"	chr11:45393461-45393520	hs|11p11.2	Agilent_HUMAN_G3V2	XR_109047	XR_109047	chr11	 45393461	 45393520	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31720_PI429285431	0.8927054	A	0.9015738	A	0.993871748348866	0	lncRNA	33461-2_{3001..3588}	n338249|AK126681|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|642|NULL|-0.1811200|-0.3971985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338249|AK126681|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|642|NULL|-0.1811200|-0.3971985	chr14	 33351451	 33352038	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9362_PI429285431	1.4557533	A	0.88902104	A	1.48116489315295	0	lncRNA	10866-1_{1..3000}	lnc-POTEJ-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POTEJ-1:1	chr2	131437298	131440297	+	lnc-POTEJ-1	lnc-POTEJ-1:1	XLOC_001671	linc-GPR148-2	NA	NA	NA	inter
CUST_44022_PI429285431	1.0871987	A	0.90720415	A	1.13287960566266	0	lncRNA	48707-2_{3001..5223}	"gi|224028253|ref|NR_026966.1| Homo sapiens uncharacterized LOC100130691 (LOC100130691), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224028253|ref|NR_026966.1| Homo sapiens uncharacterized LOC100130691 (LOC100130691), non-coding RNA"	Chr2	178151236	178153458	-	100130691	NR_026966.1	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90"	NA	inter
CUST_11373_PI429285431	1.1342641	A	1.4977456	A	0.777286572907721	0	lncRNA	12937-1_{1..537}	lnc-ADAMTS12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAMTS12-2:1	chr5	 33440311	 33440847	-	lnc-ADAMTS12-2	lnc-ADAMTS12-2:1	XLOC_004773	linc-ZFR-4	TARS	NA	chr5:33440898-33450725	inter
CUST_11591_PI429285431	1.0546238	A	1.7306476	A	0.625887904029852	0	lncRNA	13172-1_{1..849}	lnc-WWOX-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-WWOX-2:5	chr16	 79762786	 79763634	+	lnc-WWOX-2	lnc-WWOX-2:5	XLOC_011797	linc-DYNLRB2-3	NA	NA	NA	inter
CUST_35184_PI429285431	1.0223733	A	1.1650976	A	0.905807066823398	0	lncRNA	36586-1_{1..3000}	n342163|AK126084|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4650|NULL|0.1665820|-0.2820557	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342163|AK126084|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4650|NULL|0.1665820|-0.2820557	chr6	163307015	163310014	+	NA	NA	NA	NA	PACRG	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00chr6:163297015-163321030"	NA	inner
CUST_4349_PI429285431	1.328301	A	1.292333	A	1.02524449698575	0	lncRNA	4304-1_{1..569}	"transcript_id ""ENST00000547795.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547795.2"" | genecode_v17"	chr12	 84054788	 84055356	-	ENSG00000257124.2	ENST00000547795.2	RP11-384P14.1	RP11-384P14.1-001	NA	NA	NA	inter
CUST_12214_PI429285431	6.372126	P	6.499878	P	0.915256487654457	0	lncRNA	13817-1_{1..202}	lnc-SHB-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SHB-1:3	chr9	 38072038	 38072239	-	lnc-SHB-1	lnc-SHB-1:3	XLOC_007686	linc-SHB	SHB	NA	chr9:38062038-38069210	inter
CUST_12049_PI429285431	1.5569721	A	2.283649	A	0.604294241774551	0	lncRNA	13634-1_{1..310}	lnc-FAM43A-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM43A-9:1	chr3	194686162	194686471	+	lnc-FAM43A-9	lnc-FAM43A-9:1	XLOC_002989	linc-MUC20-8	NA	NA	NA	inter
CUST_6962_PI429285431	7.858689	P	7.276299	P	1.49732770079251	0	lncRNA	6910-1_{1..637}	"transcript_id ""ENST00000444114.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444114.1"" | genecode_v17"	chr22	 27617310	 27617946	-	ENSG00000233521.1	ENST00000444114.1	RP5-1172A22.1	RP5-1172A22.1-002	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80"	NA	inter
CUST_32959_PI429285431	1.6675595	A	2.1161385	A	0.732764237677995	0	lncRNA	34576-2_{3001..3389}	n339634|AK129941|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2078|NULL|-1.0711200|-0.3916172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339634|AK129941|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2078|NULL|-1.0711200|-0.3916172	chr3	145770417	145770805	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25972_PI429285431	1.5087942	A	0.9653566	A	1.45744111965816	0	lncRNA	27492-1_{1..487}	lnc-C15orf48-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C15orf48-1:1	chr15	 45753477	 45753963	+	lnc-C15orf48-1	lnc-C15orf48-1:1	ENSG00000259354.1	RP11-519G16.3	NA	NA	NA	inter
CUST_4254_PI429285431	0.92357093	A	0.96583873	A	0.971127213500438	0	lncRNA	4211-1_{1..525}	"transcript_id ""ENST00000551922.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551922.1"" | genecode_v17"	chr12	 50302665	 50303189	-	ENSG00000258135.1	ENST00000551922.1	RP11-70F11.11	RP11-70F11.11-005	FAIM2	NA	chr12:50292665-50297760	inter
CUST_22880_PI429285431	1.1540388	A	1.0667343	A	1.06238339299596	0	lncRNA	24456-1_{1..523}	lnc-PCDH10-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PCDH10-7:2	chr4	132462296	132462818	+	lnc-PCDH10-7	lnc-PCDH10-7:2	ENSG00000250102.1	RP11-314N14.1	NA	NA	NA	inter
LNCA_21_P0011043	3.6860003	P	4.1008606	P	0.750092124542887	0	lncRNA	TCONS_l2_00005567	NA	NA	NA	NA	XLOC_l2_002928	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002928), lincRNA [TCONS_l2_00005567]"	chr12:27286512-27287926	hs|12p11.23	Agilent_HUMAN_G3V2	TCONS_l2_00005567	TCONS_l2_00005567	chr12	 27286512	 27287926	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12191_PI429285431	9.557891	P	9.435894	P	1.08824017873662	0	lncRNA	13791-1_{1..1481}	lnc-TMEM163-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM163-1:1	chr2	134788429	134789909	-	lnc-TMEM163-1	lnc-TMEM163-1:1	XLOC_002331	linc-NCKAP5	NA	NA	NA	inter
CUST_38766_PI429285431	1.0840048	A	0.89971983	A	1.13625368243942	0	lncRNA	39759-1_{1..886}	n384373|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fjc.1||-1.1871100|-0.2785119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384373|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fjc.1||-1.1871100|-0.2785119	chr3	178253503	178254388	-	NA	NA	NA	NA	KCNMB2	NA	chr3:178254224-178562217	inner
CUST_1276_PI429285431	2.0949466	A	0.9200359	A	2.2577890525626	0	lncRNA	1267-2_{3001..3489}	"transcript_id ""ENST00000455228.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000455228.1"" | genecode_v17"	chr2	239843998	239844486	-	ENSG00000227744.4	ENST00000455228.1	AC114788.2	AC114788.2-001	NA	NA	NA	inter
CUST_47882_PI429285431	5.166887	P	4.34218	P	1.7711752899235	0	lncRNA	51777-1_{1..879}	"gi|410171565|ref|XR_171252.1| PREDICTED: Homo sapiens uncharacterized LOC100288102 (LOC100288102), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410171565|ref|XR_171252.1| PREDICTED: Homo sapiens uncharacterized LOC100288102 (LOC100288102), misc_RNA"	NA	NA	NA	NA	NA	XR_171252.1	NA	NA	NA	NA	NA	Unknown
CUST_17974_PI429285431	1.2257953	A	1.182278	A	1.03062343290378	0	lncRNA	19706-1_{1..259}	lnc-VWF-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VWF-3:1	chr12	  5642997	  5643255	-	lnc-VWF-3	lnc-VWF-3:1	XLOC_009993	linc-AKAP3-1	NA	NA	NA	inter
CUST_2274_PI429285431	0.89886105	A	0.98774624	A	0.94024902476348	0	lncRNA	2266-1_{1..651}	"transcript_id ""ENST00000505908.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505908.1"" | genecode_v17"	chr5	 97421964	 97422614	-	ENSG00000248901.1	ENST00000505908.1	AC008834.1	AC008834.1-001	NA	NA	NA	inter
CUST_43606_PI429285431	7.247567	P	7.319192	P	0.951565584814773	0	lncRNA	48369-1_{1..2154}	"gi|344313187|ref|NR_045033.1| Homo sapiens anterior pharynx defective 1 homolog A (C. elegans) (APH1A), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|344313187|ref|NR_045033.1| Homo sapiens anterior pharynx defective 1 homolog A (C. elegans) (APH1A), transcript variant 5, non-coding RNA"	NW_003871055.3	  7080812	  7082965	-	51107	NR_045033.1	NA	NA	NA	NA	NA	Unknown
CUST_15101_PI429285431	1.5059333	A	1.236562	A	1.20528247326545	0	lncRNA	16766-1_{1..709}	lnc-C10orf126-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf126-2:1	chr10	 29264198	 29264906	+	lnc-C10orf126-2	lnc-C10orf126-2:1	XLOC_008426	linc-LYZL1-4	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90"	NA	inter
CUST_12840_PI429285431	4.581381	P	4.810093	P	0.85339644155814	0	lncRNA	14467-1_{1..1168}	lnc-ZNF680-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF680-5:1	chr7	 63174729	 63175896	-	lnc-ZNF680-5	lnc-ZNF680-5:1	XLOC_006466	linc-ZNF479-1	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-22.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_35406_PI429285431	11.844044	P	11.824097	P	1.01392223084704	0	lncRNA	36817-1_{1..1233}	n342466|BC022433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4960|NULL|1.5583300|-0.2893538	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342466|BC022433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4960|NULL|1.5583300|-0.2893538	chr2	232573235	232574467	+	NA	NA	NA	NA	PTMA	NA	chr2:232573235-232578251	inter
CUST_40491_PI429285431	0.9061976	A	0.9146213	A	0.994178149132592	0	lncRNA	41256-1_{1..2092}	n409426|NR_033822_2|lncRNA|Homosapiens||RefGeneNoncode|NR_033822_2||-0.9646170|-0.2123175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409426|NR_033822_2|lncRNA|Homosapiens||RefGeneNoncode|NR_033822_2||-0.9646170|-0.2123175	chr6	  1888250	  1890341	+	NA	NA	NA	NA	GMDS	NA	chr6:1878250-1916085	inner
CUST_3238_PI429285431	0.8945306	A	1.3010435	A	0.75444472001994	0	lncRNA	3217-1_{1..373}	"transcript_id ""ENST00000602571.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602571.1"" | genecode_v17"	chr8	 97152800	 97153172	-	ENSG00000270131.1	ENST00000602571.1	KB-1043D8.8	KB-1043D8.8-001	GDF6	NA	chr8:97154558-97163172	inter
CUST_28942_PI429285431	2.2622092	A	1.4802554	A	1.7194579087164	0	lncRNA	30661-1_{1..523}	n326370|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080560|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080560|-1.1760800|-0.1830353	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326370|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080560|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080560|-1.1760800|-0.1830353	chr1	154682827	154683349	-	NA	NA	NA	NA	KCNN3	NA	chr1:154672827-154702882	inner
CUST_30994_PI429285431	12.425207	P	13.010703	P	0.666420183229491	0	lncRNA	32782-1_{1..640}	n337157|AF399573|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383987|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383987|5.0877500|-0.2664252	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337157|AF399573|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383987|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383987|5.0877500|-0.2664252	chr15	102358591	102359230	+	NA	NA	NA	NA	GPCRLTM7	NA	chr15:102368944-102369231	inner
CUST_45228_PI429285431	3.1859694	P	2.1220481	A	2.09060615330591	0	lncRNA	49685-1_{1..2212}	"gi|282847411|ref|NR_033193.1| Homo sapiens zinc finger, AN1-type domain 1 (ZFAND1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|282847411|ref|NR_033193.1| Homo sapiens zinc finger, AN1-type domain 1 (ZFAND1), transcript variant 4, non-coding RNA"	Chr8	 82613566	 82615777	-	79752	NR_033193.1	NA	NA	NA	NA	NA	inter
CUST_648_PI429285431	3.5373983	P	4.1046033	P	0.674923082435856	0	lncRNA	640-1_{1..256}	"transcript_id ""ENST00000431542.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431542.1"" | genecode_v17"	chr2	   741977	   742232	+	ENSG00000231173.1	ENST00000431542.1	AC116609.3	AC116609.3-001	NA	NA	NA	inter
CUST_19528_PI429285431	1.2143652	A	1.3272446	A	0.924740577230458	0	lncRNA	21184-1_{1..529}	lnc-SHF-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHF-3:1	chr15	 45571395	 45571923	-	lnc-SHF-3	lnc-SHF-3:1	ENSG00000259520.1	CTD-2651B20.3	SLC28A2	"hg19_refFlat_SLC28A2:range=chr15:45545414-455677115'pad=0,hg19_refFlat_SLC28A2:range=chr15:45545414-455677115'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90chr15:45561395-45568132"	NA	inter
CUST_37278_PI429285431	2.2758	A	1.0905669	A	2.27400133311693	0	lncRNA	38387-1_{1..397}	n345719|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1268|NULL|-1.4925500|-0.3199931	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345719|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1268|NULL|-1.4925500|-0.3199931	chr2	 88003961	 88004357	+	NA	NA	NA	NA	LOC730268	NA	chr2:88016196-88023751	inter
CUST_45359_PI429285431	9.151306	P	8.37114	P	1.71732846149705	0	lncRNA	49796-1_{1..1287}	"gi|300244533|ref|NR_034006.1| Homo sapiens FSHD region gene 1 pseudogene (LOC100132352), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300244533|ref|NR_034006.1| Homo sapiens FSHD region gene 1 pseudogene (LOC100132352), non-coding RNA"	Chr9	 68726541	 68727827	+	100132352	NR_034006.1	NA	NA	NA	NA	NA	inter
CUST_39861_PI429285431	3.863079	P	1.0313083	A	7.11947421648091	0	lncRNA	40759-2_{3001..4423}	n406513|NR_024020|lncRNA|Homosapiens||RefGeneNoncode|NR_024020||15.8698000|-0.1920768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406513|NR_024020|lncRNA|Homosapiens||RefGeneNoncode|NR_024020||15.8698000|-0.1920768	chr9	 95062639	 95064061	-	NA	NA	NA	NA	IARS	NA	chr9:95049639-95056038	inner
CUST_12782_PI429285431	0.8844104	A	1.8758966	A	0.502959381768606	0	lncRNA	14408-1_{1..430}	lnc-SOCS6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOCS6-2:2	chr18	 67874265	 67874694	+	lnc-SOCS6-2	lnc-SOCS6-2:2	XLOC_012708	linc-SOCS6	RTTN	NA	chr18:67864265-67872962	inter
CUST_14343_PI429285431	2.4760041	A	1.4209266	A	2.0778298223433	0	lncRNA	16000-1_{1..422}	lnc-GJA1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GJA1-3:2	chr6	122282465	122282886	+	lnc-GJA1-3	lnc-GJA1-3:2	XLOC_005452	linc-HSF2-1	NA	NA	NA	inter
LNCA_21_P0007578	0.8854943	A	0.90320206	A	0.987800935405141	0	lncRNA	TCONS_00020465	NA	NA	NA	NA	XLOC_009798	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009798), lincRNA [TCONS_00020465]"	chr12:69801421-69801480	hs|12q15	Agilent_HUMAN_G3V2	TCONS_00020465	TCONS_00020465	chr12	 69801421	 69801480	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011420	0.8852103	A	1.1192228	A	0.850266793031902	0	lncRNA	TCONS_l2_00009629	NA	NA	NA	NA	XLOC_l2_005150	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005150), lincRNA [TCONS_l2_00009629]"	chr16:21358700-21358759	hs|16p12.2	Agilent_HUMAN_G3V2	TCONS_l2_00009629	TCONS_l2_00009629	chr16	 21358700	 21358759	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9450_PI429285431	3.2792048	A	4.172179	P	0.538502818162537	0	lncRNA	10955-1_{1..973}	lnc-HABP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HABP2-1:1	chr10	115291690	115292662	+	lnc-HABP2-1	lnc-HABP2-1:1	XLOC_008620	linc-HABP2	NA	NA	NA	inter
CUST_38395_PI429285431	5.231663	P	4.706667	P	1.43892959044533	0	lncRNA	39432-2_{3001..3358}	n382317|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yvq.2||4.4663400|-0.2332226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382317|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yvq.2||4.4663400|-0.2332226	chr15	 23285264	 23285621	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60"	NA	inter
CUST_32074_PI429285431	0.87974346	A	0.8836795	A	0.997275463276916	0	lncRNA	33782-1_{1..898}	n338635|BC036296|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1048|NULL|-1.0797200|-0.2800561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338635|BC036296|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1048|NULL|-1.0797200|-0.2800561	chr13	 32872393	 32873290	+	NA	NA	NA	NA	FRY	NA	chr13:32862393-32870776	inter
CUST_37322_PI429285431	3.0058212	A	3.7228827	P	0.608335246313854	0	lncRNA	38428-2_{3001..4900}	n345765|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1314|NULL|-1.2734600|-0.1767863	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345765|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1314|NULL|-1.2734600|-0.1767863	chr14	 21126296	 21128195	-	NA	NA	NA	NA	NA	"hg19_refFlat_SYCP2L:range=chr6:10887360-109640395'pad=0,hg19_refFlat_SYCP2L:range=chr6:10887360-109640395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60"	NA	inter
CUST_4946_PI429285431	1.9005752	A	1.7878168	A	1.08129367016953	0	lncRNA	4890-1_{1..548}	"transcript_id ""ENST00000557355.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557355.1"" | genecode_v17"	chr14	 88503281	 88503828	+	ENSG00000258867.1	ENST00000557355.1	RP11-300J18.3	RP11-300J18.3-004	NA	NA	NA	inter
CUST_11397_PI429285431	10.191792	P	10.114893	P	1.05474847379427	0	lncRNA	12963-1_{1..380}	lnc-PPIAL4C-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPIAL4C-5:4	chr1	149231540	149231919	+	lnc-PPIAL4C-5	lnc-PPIAL4C-5:4	XLOC_000393	linc-PPIAL4A-4	NA	NA	NA	inter
CUST_2820_PI429285431	1.0881099	A	2.219027	A	0.456625362813666	0	lncRNA	2803-1_{1..555}	"transcript_id ""ENST00000416708.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416708.1"" | genecode_v17"	chr7	 46009256	 46009810	+	ENSG00000237471.1	ENST00000416708.1	AC073115.6	AC073115.6-001	NA	NA	NA	inter
CUST_20458_PI429285431	2.231637	A	3.0388308	A	0.571492392878025	0	lncRNA	22102-1_{1..581}	lnc-SCG3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SCG3-1:1	chr15	 52048510	 52049090	+	lnc-SCG3-1	lnc-SCG3-1:1	ENSG00000259377.1	CTD-2308G16.1	LYSMD2	NA	chr15:52038510-52043650	inner
CUST_10237_PI429285431	3.6350675	P	4.34369	P	0.611904112322832	0	lncRNA	11761-1_{1..2343}	lnc-VPS18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VPS18-1:1	chr15	 41201027	 41203369	+	lnc-VPS18-1	lnc-VPS18-1:1	XLOC_011223	linc-DLL4	VPS18	NA	chr15:41191027-41196173	inter
CUST_42886_PI429285431	7.377976	P	7.762409	P	0.76608001990918	0	lncRNA	45970-1_{1..128}	ENST00000363418 ncrna:snoRNA chromosome:GRCh37:3:177342070:177342197:-1 gene:ENSG00000200288 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363418 ncrna:snoRNA chromosome:GRCh37:3:177342070:177342197:-1 gene:ENSG00000200288 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	177342070	177342197	-	ENSG00000200288	ENST00000363418	NA	NA	NA	NA	NA	inter
CUST_42528_PI429285431	3.2655725	A	3.7498808	P	0.714839717557308	0	lncRNA	45321-1_{1..154}	ENST00000517108 ncrna:snoRNA chromosome:GRCh37:12:42740863:42741016:-1 gene:ENSG00000252917 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517108 ncrna:snoRNA chromosome:GRCh37:12:42740863:42741016:-1 gene:ENSG00000252917 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 42740863	 42741016	-	ENSG00000252917	ENST00000517108	NA	NA	PPHLN1	NA	chr12:42730863-42751016	inner
CUST_23924_PI429285431	1.4433417	A	0.8901065	A	1.46737254779827	0	lncRNA	25481-1_{1..520}	lnc-C14orf118-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C14orf118-1:1	chr14	 76729543	 76730062	+	lnc-C14orf118-1	lnc-C14orf118-1:1	ENSG00000258454.1	RP11-361H10.3	NA	NA	NA	inter
CUST_39065_PI429285431	0.8812163	A	0.8839479	A	0.998108390514189	0	lncRNA	40040-1_{1..2249}	n385530|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004acj.1||-0.9439130|-0.2644972	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385530|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004acj.1||-0.9439130|-0.2644972	chr9	 42500526	 42502774	+	NA	NA	NA	NA	CBWD7	NA	chr9:42490526-42516814	inter
CUST_17810_PI429285431	6.0899496	P	5.573302	P	1.43062702513462	0	lncRNA	19547-1_{1..796}	lnc-AGPAT2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AGPAT2-2:1	chr9	139519662	139520457	-	lnc-AGPAT2-2	lnc-AGPAT2-2:1	XLOC_007896	linc-NOTCH1-1	NA	NA	NA	inter
CUST_22345_PI429285431	3.2280774	P	4.0785575	P	0.554600145506605	0	lncRNA	23939-1_{1..610}	lnc-MALL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MALL-1:1	chr2	110362970	110363579	-	lnc-MALL-1	lnc-MALL-1:1	ENSG00000230696.1	AC011753.5	10-Sep	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70chr2:110352970-110371783"	NA	inter
LNCA_19_P00318514	1.8450731	A	2.1397254	A	0.815268794437564	0	lncRNA	TCONS_00026541	NA	NA	NA	NA	XLOC_012862	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012862), lincRNA [TCONS_00026541]"	chr18:59416056-59415997	hs|18q21.33	Agilent_HUMAN_G3V2	TCONS_00026541	TCONS_00026541	chr18	 59415997	 59416056	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43329_PI429285431	4.3195424	P	4.537782	P	0.859613711406075	0	lncRNA	48157-4_{9001..9793}	ENST00000454051 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:29969382:29992343:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>ENST00000454051 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:29969382:29992343:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	chrHSCHR6_MHC_QBL	 29978382	 29979174	-	ENSG00000235814	ENST00000454051	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80"	NA	Unknown
CUST_7406_PI429285431	0.88588035	A	0.8883829	A	0.998266868133877	0	lncRNA	9049-2_{3001..5043}	lnc-IQCG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IQCG-1:1	chr3	197610105	197612147	-	lnc-IQCG-1	lnc-IQCG-1:1	ENSG00000246832	ENST00000501503	IQCG	NA	chr3:197615946-197619382	inter
LNCA_21_P0006830	1.2844315	A	1.5593841	A	0.826477471771232	0	lncRNA	TCONS_00018113	NA	NA	NA	NA	XLOC_008374	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008374), lincRNA [TCONS_00018113]"	chr10:6823438-6859059	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018113	TCONS_00018113	chr10	  6823438	  6859059	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49297_PI429285431	1.4133346	A	2.089999	A	0.625610052663083	0	lncRNA	53114-1_{1..1648}	hg19_lincRNAsTranscripts_TCONS_l2_00022777 range=chr5:7299486-7301196 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022777 range=chr5:7299486-7301196 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	  7299486	  7301133	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.10;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00"	NA	inter
CUST_21910_PI429285431	4.4380903	P	4.7651167	P	0.797177888780666	0	lncRNA	23519-1_{1..532}	lnc-MFNG-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MFNG-2:6	chr22	 37814904	 37815435	-	lnc-MFNG-2	lnc-MFNG-2:6	ENSG00000243902.1	RP1-63G5.5	ELFN2	NA	chr22:37804904-37823505	inner
LNCA_21_P0008069	4.8308063	P	4.721373	P	1.07880439188026	0	lncRNA	TCONS_00021808	NA	NA	NA	NA	XLOC_010407	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010407), lincRNA [TCONS_00021808]"	chr13:62807502-62807561	hs|13q21.31	Agilent_HUMAN_G3V2	TCONS_00021808	TCONS_00021808	chr13	 62807502	 62807561	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28983_PI429285431	1.3272921	A	1.1185898	A	1.1556482140377	0	lncRNA	30704-1_{1..2295}	n326464|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051445|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051445|-0.3117610|-0.3837915	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326464|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051445|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051445|-0.3117610|-0.3837915	chr1	116837167	116839461	-	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80"	NA	inter
CUST_42209_PI429285431	0.96292263	A	0.8975609	A	1.0463472597819	0	lncRNA	44301-1_{1..105}	ENST00000581814 ncrna:miRNA chromosome:GRCh37:13:102619992:102620096:-1 gene:ENSG00000265164 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581814 ncrna:miRNA chromosome:GRCh37:13:102619992:102620096:-1 gene:ENSG00000265164 gene_biotype:miRNA transcript_biotype:miRNA	chr13	102619992	102620096	-	ENSG00000265164	ENST00000581814	NA	NA	FGF14	NA	chr13:102609992-102630096	inner
CUST_23364_PI429285431	6.0179777	P	6.235045	P	0.860312497125224	0	lncRNA	24933-1_{1..570}	lnc-TELO2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TELO2-2:1	chr16	  1502268	  1502837	+	lnc-TELO2-2	lnc-TELO2-2:1	ENSG00000260051.1	LA16c-390E6.4	CLCN7	NA	chr16:1494935-1512654	inner
CUST_37504_PI429285431	4.29306	P	4.8279533	P	0.690209721896325	0	lncRNA	38607-1_{1..789}	n345976|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1525|NULL|-1.3739500|-0.1213174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345976|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1525|NULL|-1.3739500|-0.1213174	chr2	176999523	177000311	-	NA	NA	NA	NA	HOXD8	NA	chr2:176994422-176997423	inter
CUST_37070_PI429285431	0.8869155	A	1.0485429	A	0.894016027058125	0	lncRNA	38199-3_{6001..6311}	n345516|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1065|NULL|-1.4494000|-0.4407499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345516|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1065|NULL|-1.4494000|-0.4407499	chr2	 32076220	 32076530	-	NA	NA	NA	NA	MEMO1	NA	chr2:32092892-32102722	inter
CUST_37838_PI429285431	6.272488	P	6.606224	P	0.7934790293134	0	lncRNA	38929-1_{1..551}	n346362|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1912|NULL|-1.6057200|-0.2337050	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346362|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1912|NULL|-1.6057200|-0.2337050	chr14	 71288640	 71289190	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33024_PI429285431	1.1657817	A	1.3322996	A	0.890990589854378	0	lncRNA	34639-1_{1..1205}	n339710|BC017990|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2155|NULL|0.4363470|-0.2949783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339710|BC017990|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2155|NULL|0.4363470|-0.2949783	chr3	182457460	182458664	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_46708_PI429285431	1.3552278	A	0.8986491	A	1.37228363448044	0	lncRNA	50867-1_{1..854}	"gi|397139919|ref|XR_109345.2| PREDICTED: Homo sapiens uncharacterized LOC100506347 (LOC100506347), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139919|ref|XR_109345.2| PREDICTED: Homo sapiens uncharacterized LOC100506347 (LOC100506347), misc_RNA"	NA	NA	NA	NA	NA	XR_109345.2	NA	NA	NA	NA	NA	Unknown
CUST_3849_PI429285431	2.7527225	A	2.584559	A	1.12362723600099	0	lncRNA	3818-1_{1..722}	"transcript_id ""ENST00000418612.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418612.1"" | genecode_v17"	chr11	  2012326	  2013047	+	ENSG00000232987.1	ENST00000418612.1	AC051649.6	AC051649.6-001	NA	NA	NA	inter
CUST_3074_PI429285431	0.887983	A	0.8942517	A	0.995664294696138	0	lncRNA	3053-1_{1..733}	"transcript_id ""ENST00000519738.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519738.1"" | genecode_v17"	chr8	 37308281	 37309013	-	ENSG00000253161.1	ENST00000519738.1	RP11-150O12.1	RP11-150O12.1-001	NA	NA	NA	inter
CUST_22293_PI429285431	0.90872896	A	1.6903535	A	0.581711390907386	0	lncRNA	23893-1_{1..677}	lnc-ARAP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARAP2-1:2	chr4	 36048332	 36049008	-	lnc-ARAP2-1	lnc-ARAP2-1:2	ENSG00000251160.1	RP11-399D2.1	NA	NA	NA	inter
CUST_5476_PI429285431	4.071546	P	3.7528107	P	1.24723671284328	0	lncRNA	5410-1_{1..2459}	"transcript_id ""ENST00000505035.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505035.1"" | genecode_v17"	chr16	 27078028	 27080486	+	ENSG00000234186.2	ENST00000505035.1	C16orf82	C16orf82-001	C16orf82	NA	chr16:27078219-27080487	inner
CUST_32311_PI429285431	4.500752	P	4.860927	P	0.779070072139506	0	lncRNA	33994-1_{1..1278}	n338888|BC038580|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1314|NULL|-1.2156200|-0.3559033	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338888|BC038580|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1314|NULL|-1.2156200|-0.3559033	chr2	 75167384	 75168661	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17585_PI429285431	0.88908726	A	0.90168804	A	0.991303837144779	0	lncRNA	19311-1_{1..353}	lnc-C10orf122-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf122-1:7	chr10	127400043	127400395	-	lnc-C10orf122-1	lnc-C10orf122-1:7	XLOC_008982	linc-C10orf122-2	C10orf137	NA	chr10:127408084-127410183	inter
CUST_19317_PI429285431	0.9261395	A	5.637225	P	0.0381787717303168	0	lncRNA	20983-1_{1..488}	lnc-IL5RA-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL5RA-6:2	chr3	   238650	   239137	-	lnc-IL5RA-6	lnc-IL5RA-6:2	ENSG00000224318.1	CHL1-AS2	CHL1	NA	chr3:238650-248882	inner
CUST_6612_PI429285431	7.835402	P	6.088687	P	3.35593552812341	0	lncRNA	6559-2_{3001..4258}	"transcript_id ""ENST00000593427.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593427.1"" | genecode_v17"	chr19	 57818673	 57819930	+	ENSG00000268205.1	ENST00000593427.1	CTC-444N24.11	CTC-444N24.11-001	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-27.26;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00"	NA	inter
CUST_4137_PI429285431	5.2411385	P	5.280883	P	0.972827218986709	0	lncRNA	4096-1_{1..515}	"transcript_id ""ENST00000542449.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000542449.1"" | genecode_v17"	chr12	  3476999	  3477513	+	ENSG00000257048.1	ENST00000542449.1	RP11-476M19.2	RP11-476M19.2-001	NA	NA	NA	inter
CUST_43255_PI429285431	7.164091	P	6.3995204	P	1.69886427747496	0	lncRNA	48073-1_{1..510}	ENST00000521989 havana:sense_intronic chromosome:GRCh37:8:37373928:37374539:-1 gene:ENSG00000253414 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,ensembl.GRCh37.72,"	>ENST00000521989 havana:sense_intronic chromosome:GRCh37:8:37373928:37374539:-1 gene:ENSG00000253414 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr8	 37373928	 37374437	-	ENSG00000253414	ENST00000521989	NA	NA	NA	NA	NA	inter
CUST_38270_PI429285431	0.9590273	A	1.1945056	A	0.849403347810452	0	lncRNA	39325-1_{1..1068}	n381841|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qwi.2||-0.9746050|-0.2699024	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381841|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qwi.2||-0.9746050|-0.2699024	chr12	  9868456	  9869523	-	NA	NA	NA	NA	CLECL1	NA	chr12:9875091-9885257	inner
CUST_44025_PI429285431	1.0565836	A	0.9010028	A	1.11386994961143	0	lncRNA	48709-1_{1..2069}	"gi|333805639|ref|NR_038271.1| Homo sapiens TTN antisense RNA 1 (TTN-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|333805639|ref|NR_038271.1| Homo sapiens TTN antisense RNA 1 (TTN-AS1), transcript variant 2, non-coding RNA"	Chr2	179387918	179389986	+	100506866	NR_038271.1	NA	NA	NA	"hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10"	NA	inter
CUST_49739_PI429285431	2.2205467	A	1.8940848	A	1.25393442169626	0	lncRNA	53510-1_{1..2587}	hg19_lincRNAsTranscripts_TCONS_l2_00025813 range=chr7:39830829-39834662 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025813 range=chr7:39830829-39834662 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 39830829	 39833415	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34734_PI429285431	1.0047385	A	1.021503	A	0.988446988624145	0	lncRNA	36179-1_{1..1690}	n341641|CR613812|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4112|NULL|3.9208600|-0.1325571	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341641|CR613812|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4112|NULL|3.9208600|-0.1325571	chr9	   503056	   504745	-	NA	NA	NA	NA	KANK1	NA	chr9:504703-514746	inner
CUST_6464_PI429285431	1.8176893	A	2.7985945	A	0.506661741907491	0	lncRNA	6406-1_{1..404}	"transcript_id ""ENST00000593041.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593041.1"" | genecode_v17"	chr19	 33795942	 33796345	+	ENSG00000267130.1	ENST00000593041.1	CTD-2540B15.9	CTD-2540B15.9-001	CEBPA	NA	chr19:33790840-33793430	inter
CUST_19026_PI429285431	6.240895	P	6.4832935	P	0.845338756372158	0	lncRNA	20716-1_{1..2364}	lnc-VAMP1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-VAMP1-1:3	chr12	  6559507	  6561870	-	lnc-VAMP1-1	lnc-VAMP1-1:3	ENSG00000215039	AC005840.1	TAPBPL	"hg19_refFlat_CD27:range=chr12:6554262-65605585'pad=0,hg19_refFlat_CD27:range=chr12:6554262-65605585'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20chr12:6561177-6570683"	NA	inter
CUST_26053_PI429285431	0.90486413	A	1.3641008	A	0.727371008893461	0	lncRNA	27567-1_{1..494}	lnc-CLEC14A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLEC14A-1:2	chr14	 38560323	 38560816	-	lnc-CLEC14A-1	lnc-CLEC14A-1:2	ENSG00000259048.1	CTD-2058B24.2	NA	NA	NA	inter
CUST_30439_PI429285431	12.957908	P	13.426342	P	0.722748693057607	0	lncRNA	32219-1_{1..308}	n335575|CR542189|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000269058|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000269058|1.9447700|-0.2388352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335575|CR542189|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000269058|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000269058|1.9447700|-0.2388352	chr6	 26204873	 26205180	+	NA	NA	NA	NA	HIST1H3D	NA	chr6:26197012-26199464	inner
CUST_32655_PI429285431	0.9227256	A	1.4258076	A	0.705597815747384	0	lncRNA	34307-1_{1..1901}	n339279|BC035064|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1711|NULL|-0.9301950|-0.2552007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339279|BC035064|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1711|NULL|-0.9301950|-0.2552007	chr3	 32278181	 32280081	-	NA	NA	NA	NA	CMTM8	NA	chr3:32280171-32290070	inter
CUST_49052_PI429285431	2.111125	A	0.90257514	A	2.31105222163969	0	lncRNA	52880-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00021403 range=chr4:174978681-175010888 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021403 range=chr4:174978681-175010888 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	174978681	174981680	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70"	NA	inter
CUST_38357_PI429285431	5.227682	P	5.576374	P	0.785295753044296	0	lncRNA	39399-1_{1..471}	n382134|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001wbn.2||1.7812100|-0.2737342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382134|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001wbn.2||1.7812100|-0.2737342	chr14	 22192007	 22192477	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46054_PI429285431	7.923727	P	8.936642	P	0.495543976989364	0	lncRNA	50329-1_{1..2337}	"gi|383286744|ref|NR_047518.1| Homo sapiens HOX transcript antisense RNA (HOTAIR), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|383286744|ref|NR_047518.1| Homo sapiens HOX transcript antisense RNA (HOTAIR), transcript variant 3, non-coding RNA"	Chr12	 54356092	 54358428	-	100124700	NR_047518.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008297	4.061287	P	4.4701624	P	0.753210282371564	0	lncRNA	TCONS_00022420	NA	NA	NA	NA	XLOC_010752	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010752), lincRNA [TCONS_00022420]"	chr14:21259660-21259719	hs|14q11.2	Agilent_HUMAN_G3V2	TCONS_00022420	TCONS_00022420	chr14	 21259660	 21259719	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002759	0.89844644	A	0.908548	A	0.993022588130888	0	lncRNA	ENST00000488348	NA	NA	NA	NA	XLOC_002723	NA	ENST00000488348	NA	NA	"BROAD Institute lincRNA (XLOC_002723), lincRNA [TCONS_00005553]"	chr3:84942088-84942423	hs|3p12.1	Agilent_HUMAN_G3V2	ENST00000488348	ENST00000488348	chr3	 84942088	 84942423	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006604	0.89695346	A	0.90641356	A	0.993464210152354	0	lncRNA	TCONS_00017642	NA	NA	NA	NA	XLOC_008299	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008299), lincRNA [TCONS_00017642]"	chrY:23313397-23313456	hs|Yq11.223	Agilent_HUMAN_G3V2	TCONS_00017642	TCONS_00017642	chrY	 23313397	 23313456	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23677_PI429285431	0.88667387	A	0.8947257	A	0.994434442160318	0	lncRNA	25242-1_{1..593}	lnc-SCGB3A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SCGB3A2-1:1	chr5	147266675	147267267	+	lnc-SCGB3A2-1	lnc-SCGB3A2-1:1	ENSG00000251320.1	CTC-327F10.4	C5orf46	NA	chr5:147272271-147277267	inter
CUST_41769_PI429285431	2.3900506	A	1.6542307	A	1.66534363426734	0	lncRNA	43332-1_{1..96}	ENST00000582865 ncrna:miRNA chromosome:GRCh37:X:151125155:151125250:-1 gene:ENSG00000264120 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582865 ncrna:miRNA chromosome:GRCh37:X:151125155:151125250:-1 gene:ENSG00000264120 gene_biotype:miRNA transcript_biotype:miRNA	chrX	151125155	151125250	-	ENSG00000264120	ENST00000582865	NA	NA	GABRE	NA	chrX:151121596-151135250	inner
CUST_18804_PI429285431	1.7734162	A	2.3341885	A	0.677939153830945	0	lncRNA	20499-1_{1..420}	lnc-DAD1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DAD1-2:2	chr14	 22950230	 22950649	-	lnc-DAD1-2	lnc-DAD1-2:2	ENSG00000251002	AE000661.37	NA	NA	NA	inter
LNCA_21_P0001293	1.7442085	A	1.2269347	A	1.43124812181067	0	lncRNA	TCONS_00000933	NA	NA	NA	NA	XLOC_000184	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000184), lincRNA [TCONS_00000933]"	chr1:50723817-50723876	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_00000933	TCONS_00000933	chr1	 50723817	 50723876	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40404_PI429285431	5.957783	P	4.458633	P	2.82676117671804	0	lncRNA	41191-2_{3001..3431}	n409266|NR_033438|lncRNA|Homosapiens||RefGeneNoncode|NR_033438||4.3754700|-0.3456541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409266|NR_033438|lncRNA|Homosapiens||RefGeneNoncode|NR_033438||4.3754700|-0.3456541	chr3	145913123	145913553	-	NA	NA	NA	NA	PLSCR4	NA	chr3:145910122-145968966	inner
CUST_42294_PI429285431	3.144848	A	3.8726091	P	0.603840279104421	0	lncRNA	44909-1_{1..143}	ENST00000516211 ncrna:snoRNA chromosome:GRCh37:22:21744085:21744227:-1 gene:ENSG00000252020 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516211 ncrna:snoRNA chromosome:GRCh37:22:21744085:21744227:-1 gene:ENSG00000252020 gene_biotype:snoRNA transcript_biotype:snoRNA	chr22	 21744085	 21744227	-	ENSG00000252020	ENST00000516211	NA	NA	RIMBP3B	NA	chr22:21734085-21743458	inter
CUST_21569_PI429285431	0.881904	A	1.4887244	A	0.656642302521116	0	lncRNA	23183-2_{3001..3461}	lnc-KDM5D-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-KDM5D-2:1	chrY	 21667918	 21668378	-	lnc-KDM5D-2	lnc-KDM5D-2:1	ENSG00000215580.4	BCORP1	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70"	NA	inter
CUST_30229_PI429285431	10.249375	P	10.034667	P	1.16046901287188	0	lncRNA	32004-1_{1..257}	n335092|AJ844628|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249432|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249432|2.0226800|-0.1101126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335092|AJ844628|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249432|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249432|2.0226800|-0.1101126	chr14	 69346670	 69346926	-	NA	NA	NA	NA	ACTN1	NA	chr14:69336670-69357629	inner
CUST_30451_PI429285431	15.167387	P	14.743704	P	1.34134746136571	0	lncRNA	32231-1_{1..355}	n335592|CR594600|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000273795|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000273795|-1.0608000|-0.1728738	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335592|CR594600|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000273795|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000273795|-1.0608000|-0.1728738	chr17	 42430115	 42430469	+	NA	NA	NA	NA	FAM171A2	NA	chr17:42431101-42440470	inner
CUST_41178_PI429285431	8.240412	P	7.844235	P	1.31601597324377	0	lncRNA	42015-1_{1..85}	ENST00000581766 ncrna:miRNA chromosome:GRCh37:HG115_PATCH:101936383:101936467:1 gene:ENSG00000263739 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581766 ncrna:miRNA chromosome:GRCh37:HG115_PATCH:101936383:101936467:1 gene:ENSG00000263739 gene_biotype:miRNA transcript_biotype:miRNA	chrHG115_PATCH	101936383	101936467	+	ENSG00000263739	ENST00000581766	NA	NA	NA	NA	NA	Unknown
CUST_18756_PI429285431	0.88480574	A	1.2000299	A	0.803726101397158	0	lncRNA	20452-1_{1..696}	lnc-ARL4C-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARL4C-2:5	chr2	235796924	235797619	-	lnc-ARL4C-2	lnc-ARL4C-2:5	ENSG00000235726	AC010148.1	NA	NA	NA	inter
CUST_16322_PI429285431	3.146047	A	2.212449	A	1.91003357698325	0	lncRNA	18025-4_{9001..12000}	lnc-NAP1L2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NAP1L2-1:7	chrX	 73070217	 73073216	-	lnc-NAP1L2-1	lnc-NAP1L2-1:7	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70"	NA	inter
LNCA_21_P0009391	0.8846437	A	2.3836021	A	0.353808741982307	0	lncRNA	TCONS_00025946	NA	NA	NA	NA	XLOC_012269	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012269), lincRNA [TCONS_00025946]"	chr17:59476195-59476254	hs|17q23.2	Agilent_HUMAN_G3V2	TCONS_00025946	TCONS_00025946	chr17	 59476195	 59476254	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44762_PI429285431	10.209217	P	10.3293915	P	0.920076356810242	0	lncRNA	49306-1_{1..2648}	"gi|225690498|ref|NR_027394.1| Homo sapiens tight junction associated protein 1 (peripheral) (TJAP1), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225690498|ref|NR_027394.1| Homo sapiens tight junction associated protein 1 (peripheral) (TJAP1), transcript variant 7, non-coding RNA"	Chr6	 43445261	 43447908	+	93643	NR_027394.1	NA	NA	NA	NA	NA	inter
CUST_3595_PI429285431	2.8023276	A	2.6183019	P	1.13604950205882	0	lncRNA	3565-1_{1..633}	"transcript_id ""ENST00000455525.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455525.1"" | genecode_v17"	chr10	  4067132	  4067764	+	ENSG00000227101.1	ENST00000455525.1	RP11-433J20.2	RP11-433J20.2-001	NA	NA	NA	inter
LNCA_21_P0013226	0.88364995	A	0.8844877	A	0.99941948451384	0	lncRNA	TCONS_l2_00025964	NA	NA	NA	NA	XLOC_l2_013458	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013458), lincRNA [TCONS_l2_00025964]"	chr7:64673167-64691972	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025964	TCONS_l2_00025964	chr7	 64673167	 64691972	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46145_PI429285431	2.038293	A	1.3349754	A	1.62824477826568	0	lncRNA	50394-2_{3001..3470}	"gi|300068999|ref|NR_033956.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 10, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|300068999|ref|NR_033956.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 10, non-coding RNA"	NA	NA	NA	NA	NA	NR_033956.1	NA	NA	NA	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	Unknown
LNCA_19_P00317504	5.455266	P	5.4878507	P	0.977667161110371	0	lncRNA	AK124820	NA	AK124820	NA	Hs.708523	LOC100129936	uncharacterized LOC100129936	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014327), lincRNA [TCONS_00029347]"	chr22:27064326-27064267	hs|22q12.1	Agilent_HUMAN_G3V2	AK124820	AK124820	chr22	 27064267	 27064326	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33196_PI429285431	1.044714	A	0.9049174	A	1.10174977348232	0	lncRNA	34788-1_{1..2210}	n339892|AK124473|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2340|NULL|-0.9548880|-0.2448882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n339892|AK124473|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2340|NULL|-0.9548880|-0.2448882	chr4	 24661478	 24663687	+	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00"	NA	inter
CUST_38103_PI429285431	0.8785678	A	0.87873524	A	0.999883946170854	0	lncRNA	39178-2_{3001..4249}	n381132|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001cza.2||-1.1734900|-0.3969690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381132|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001cza.2||-1.1734900|-0.3969690	chr1	 59123411	 59124659	-	NA	NA	NA	NA	MYSM1	NA	chr1:59120411-59134660	inner
CUST_22916_PI429285431	3.9829018	P	4.444633	P	0.726114415507597	0	lncRNA	24493-1_{1..3000}	lnc-TFPT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TFPT-1:1	chr19	 54625871	 54628870	-	lnc-TFPT-1	lnc-TFPT-1:1	ENSG00000237017.1	AC012314.8	PRPF31	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PRPF31:range=chr19:54621659-546348635'pad=0,hg19_refFlat_PRPF31:range=chr19:54621659-546348635'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60chr19:54618790-54635150"	NA	inner
CUST_13973_PI429285431	4.38575	P	4.4297843	P	0.969938849821603	0	lncRNA	15618-1_{1..398}	lnc-EVX1-14:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EVX1-14:5	chr7	 27449540	 27449937	+	lnc-EVX1-14	lnc-EVX1-14:5	XLOC_006028	linc-TAX1BP1	NA	NA	NA	inter
CUST_2233_PI429285431	0.88520443	A	0.8807989	A	1.00305834793081	0	lncRNA	2225-1_{1..292}	"transcript_id ""ENST00000515750.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515750.1"" | genecode_v17"	chr5	 86415965	 86416256	+	ENSG00000249061.1	ENST00000515750.1	RP11-72L22.1	RP11-72L22.1-002	NA	NA	NA	inter
CUST_35767_PI429285431	3.5819209	P	4.1071486	P	0.694849433449115	0	lncRNA	37186-1_{1..3000}	n344456|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_4|NULL|-1.5042800|-0.3122013	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344456|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_4|NULL|-1.5042800|-0.3122013	chr7	130565957	130568956	+	NA	NA	NA	NA	MKLN1	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50chr7:130794855-130803564"	NA	inter
LNCA_21_P0013503	4.254975	P	4.5537443	P	0.81294558895153	0	lncRNA	TCONS_l2_00028011	NA	NA	NA	NA	XLOC_l2_014372	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014372), lincRNA [TCONS_l2_00028011]"	chr8:144164269-144164328	hs|8q24.3	Agilent_HUMAN_G3V2	TCONS_l2_00028011	TCONS_l2_00028011	chr8	144164269	144164328	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19599_PI429285431	0.8798344	A	0.8800161	A	0.999874063088011	0	lncRNA	21255-1_{1..573}	lnc-RARS-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RARS-4:5	chr5	168449749	168450321	+	lnc-RARS-4	lnc-RARS-4:5	ENSG00000248222.1	CTB-174D11.1	SLIT3	NA	chr5:168439749-168459876	inner
CUST_50781_PI429285431	1.2531456	A	1.1510123	A	1.07335945648949	0	lncRNA	54437-1_{1..497}	hg19_lincRNAsTranscripts_TCONS_l2_00004868 range=chr11:168755-180407 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004868 range=chr11:168755-180407 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	   168755	   169251	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41020_PI429285431	1.4604841	A	1.8568456	A	0.759772026214605	0	lncRNA	41680-1_{1..2405}	n411626|NR_040090_6|lncRNA|Homosapiens||RefGeneNoncode|NR_040090_6||0.3749660|-0.1876119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411626|NR_040090_6|lncRNA|Homosapiens||RefGeneNoncode|NR_040090_6||0.3749660|-0.1876119	chr6	  3385991	  3388395	+	NA	NA	NA	NA	SLC22A23	NA	chr6:3375991-3399262	inner
CUST_36123_PI429285431	10.271605	P	11.336281	P	0.478080013801165	0	lncRNA	37412-1_{1..3000}	n344698|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_247|NULL|-1.3456200|-0.2435945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344698|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_247|NULL|-1.3456200|-0.2435945	chr5	141724980	141727979	+	NA	NA	NA	NA	NA	"hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0,hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70"	NA	inter
CUST_24353_PI429285431	0.8953154	A	0.8918991	A	1.00237080463627	0	lncRNA	25905-1_{1..929}	lnc-SDIM1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SDIM1-3:5	chr6	166401017	166401945	-	lnc-SDIM1-3	lnc-SDIM1-3:5	ENSG00000223414.2	LINC00473	NA	NA	NA	inter
CUST_3418_PI429285431	0.8979264	A	0.9034457	A	0.996181621384607	0	lncRNA	3390-1_{1..495}	"transcript_id ""ENST00000448491.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448491.1"" | genecode_v17"	chr9	 46661444	 46661938	-	ENSG00000231212.1	ENST00000448491.1	RP11-111F5.3	RP11-111F5.3-002	NA	NA	NA	inter
CUST_3729_PI429285431	4.2472315	P	4.4787354	P	0.851746547751329	0	lncRNA	3698-1_{1..525}	"transcript_id ""ENST00000441348.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441348.1"" | genecode_v17"	chr10	 73638114	 73638638	+	ENSG00000230526.1	ENST00000441348.1	RP11-472G21.2	RP11-472G21.2-001	NA	NA	NA	inter
CUST_26184_PI429285431	0.88543886	A	0.89130324	A	0.995943371972934	0	lncRNA	27695-1_{1..694}	lnc-ACP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACP1-1:1	chr2	   287009	   287702	+	lnc-ACP1-1	lnc-ACP1-1:1	ENSG00000228643.1	AC079779.4	FAM150B	NA	chr2:279561-288308	inner
CUST_23606_PI429285431	2.5029526	A	2.4443648	A	1.04144582952178	0	lncRNA	25172-1_{1..464}	lnc-AC069257.9.1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC069257.9.1-3:3	chr3	196050628	196051091	+	lnc-AC069257.9.1-3	lnc-AC069257.9.1-3:3	ENSG00000235897.1	TM4SF19-AS1	TM4SF19	"hg19_refFlat_TM4SF19:range=chr3:196050585-1960544615'pad=0,hg19_refFlat_TM4SF19:range=chr3:196050585-1960544615'pad=0 3'pad=0 strand=- repeatMasking=none,-93.40;hg19_refFlat_TM4SF19:range=chr3:196050688-1960544615'pad=0,hg19_refFlat_TM4SF19:range=chr3:196050688-1960544615'pad=0 3'pad=0 strand=- repeatMasking=none,-93.40chr3:196050417-196061059"	NA	inner
CUST_19219_PI429285431	0.8941993	A	1.0532805	A	0.895595261390647	0	lncRNA	20889-1_{1..507}	lnc-RP11-680F20.5.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-680F20.5.1-2:3	chr11	125825712	125826218	+	lnc-RP11-680F20.5.1-2	lnc-RP11-680F20.5.1-2:3	ENSG00000254967.2	RP11-680F20.6	CDON	NA	chr11:125826713-125835832	inter
LNCA_21_P0003764	2.7878554	A	3.2517881	P	0.725007236371966	0	lncRNA	TCONS_00008564	NA	NA	NA	NA	XLOC_004058	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004058), lincRNA [TCONS_00008564]"	chr4:120723857-120723798	hs|4q26	Agilent_HUMAN_G3V2	TCONS_00008564	TCONS_00008564	chr4	120723798	120723857	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008344	2.3398256	A	1.7907642	A	1.46313348922403	0	lncRNA	TCONS_00022523	NA	NA	NA	NA	XLOC_010846	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010846), lincRNA [TCONS_00022523]"	chr14:59590896-59590955	hs|14q23.1	Agilent_HUMAN_G3V2	TCONS_00022523	TCONS_00022523	chr14	 59590896	 59590955	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9297_PI429285431	1.287631	A	1.3526971	A	0.955901520023097	0	lncRNA	10802-1_{1..1054}	lnc-AL137145.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL137145.1-2:1	chr10	  6626080	  6627133	+	lnc-AL137145.1-2	lnc-AL137145.1-2:1	XLOC_008370	linc-ITIH2-10	NA	NA	NA	inter
CUST_47633_PI429285431	3.8261752	P	3.319069	P	1.42119665678689	0	lncRNA	51623-1_{1..2328}	"gi|337756414|ref|NR_039980.1| Homo sapiens uncharacterized LOC286437 (LOC286437), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|337756414|ref|NR_039980.1| Homo sapiens uncharacterized LOC286437 (LOC286437), non-coding RNA"	NW_004070885.1	   258721	   261048	-	286437	NR_039980.1	NA	NA	NA	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80"	NA	Unknown
CUST_6518_PI429285431	3.6953688	P	4.4825134	P	0.579489891301378	0	lncRNA	6460-1_{1..482}	"transcript_id ""ENST00000596135.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596135.1"" | genecode_v17"	chr19	 41337126	 41337607	-	ENSG00000269843.1	ENST00000596135.1	CTC-490E21.10	CTC-490E21.10-001	CYP2A6	NA	chr19:41349443-41353115	inter
CUST_13296_PI429285431	4.007125	P	4.6468773	P	0.641823135577103	0	lncRNA	14929-1_{1..301}	lnc-PCF11-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCF11-1:12	chr11	 82802295	 82802595	+	lnc-PCF11-1	lnc-PCF11-1:12	XLOC_009233	linc-PCF11-2	NA	NA	NA	inter
LNCA_21_P0011796	7.1127734	P	7.048184	P	1.0457872598619	0	lncRNA	TCONS_l2_00013558	NA	NA	NA	NA	XLOC_l2_007271	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007271), lincRNA [TCONS_l2_00013558]"	chr2:33861941-33862000	hs|2p22.3	Agilent_HUMAN_G3V2	TCONS_l2_00013558	TCONS_l2_00013558	chr2	 33861941	 33862000	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35715_PI429285431	10.485617	P	9.89844	P	1.50230422891045	0	lncRNA	37134-2_{3001..3585}	n342881|BC032104|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5387|NULL|0.1275940|-0.1256676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342881|BC032104|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5387|NULL|0.1275940|-0.1256676	chr9	139705412	139705996	-	NA	NA	NA	NA	C9orf86	"hg19_refFlat_RABL6:range=chr9:139702649-1397284115'pad=0,hg19_refFlat_RABL6:range=chr9:139702649-1397284115'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_RABL6:range=chr9:139702649-1397349745'pad=0,hg19_refFlat_RABL6:range=chr9:139702649-1397349745'pad=0 3'pad=0 strand=+ repeatMasking=none,-114.90chr9:139702374-139735639"	NA	inner
CUST_11962_PI429285431	0.9200928	A	0.88272214	A	1.02624177549116	0	lncRNA	13540-2_{3001..3591}	lnc-C20orf187-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf187-1:1	chr20	 10984408	 10984998	+	lnc-C20orf187-1	lnc-C20orf187-1:1	XLOC_013463	linc-BTBD3-1	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20"	NA	inter
CUST_25884_PI429285431	0.8831556	A	1.4256212	A	0.686596496129703	0	lncRNA	27404-1_{1..762}	lnc-NUFIP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUFIP2-1:1	chr17	 27717623	 27718384	-	lnc-NUFIP2-1	lnc-NUFIP2-1:1	ENSG00000264808.1	MIR4523	TAOK1	NA	chr17:27717943-27727795	inter
LNCA_21_P0014942	8.515581	P	8.627821	P	0.925150511523313	0	lncRNA	XR_133449	XR_133449	XR_133449	NA	Hs.127379	LOC100653233	uncharacterized LOC100653233	NA	NP1135931	NA	"PREDICTED: Homo sapiens hypothetical LOC100653233 (LOC100653233), miscRNA [XR_133449]"	NA	NA	Agilent_HUMAN_G3V2	XR_133449	XR_133449	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7617_PI429285431	0.8859335	A	1.3366017	A	0.731703872820882	0	lncRNA	9251-1_{1..3000}	lnc-NACA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NACA2-1:1	chr17	 59482811	 59485810	-	lnc-NACA2-1	lnc-NACA2-1:1	ENSG00000245950	ENST00000502172	C17orf82	"hg19_refFlat_TBX2:range=chr17:59477538-594858675'pad=0,hg19_refFlat_TBX2:range=chr17:59477538-594858675'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.80chr17:59489112-59490641"	NA	inner
CUST_5392_PI429285431	1.2838382	A	1.048485	A	1.17719490230957	0	lncRNA	5326-1_{1..484}	"transcript_id ""ENST00000570087.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000570087.1"" | genecode_v17"	chr16	  1939115	  1939598	+	ENSG00000259947.1	ENST00000570087.1	XX-DJ76P10__A.2	XX-DJ76P10__A.2-001	NA	NA	NA	inter
CUST_3701_PI429285431	0.90197873	A	0.90474635	A	0.998083470891952	0	lncRNA	3669-1_{1..870}	"transcript_id ""ENST00000600486.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600486.1"" | genecode_v17"	chr10	 61496956	 61497825	-	ENSG00000227877.2	ENST00000600486.1	RP11-59J5.1	RP11-59J5.1-007	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00"	NA	inter
CUST_36651_PI429285431	2.7751498	A	2.7688525	A	1.00437449603538	0	lncRNA	37842-1_{1..707}	n345146|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_695|NULL|-1.2820400|-0.3383778	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345146|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_695|NULL|-1.2820400|-0.3383778	chr11	 74357973	 74358679	-	NA	NA	NA	NA	POLD3	NA	chr11:74347973-74353765	inter
CUST_4143_PI429285431	2.0226572	A	2.6614866	A	0.642233844740556	0	lncRNA	4102-1_{1..626}	"transcript_id ""ENST00000540619.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000540619.1"" | genecode_v17"	chr12	  5343584	  5344209	-	ENSG00000256115.1	ENST00000540619.1	RP11-319E16.1	RP11-319E16.1-004	LOC100507271	NA	chr12:5343813-5347432	inter
CUST_30908_PI429285431	8.711438	P	8.686803	P	1.01722230360289	0	lncRNA	32696-1_{1..312}	n336944|BC098174|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000335819|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000335819|-1.1048600|-0.0953894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336944|BC098174|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000335819|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000335819|-1.1048600|-0.0953894	chr12	113737166	113737477	-	NA	NA	NA	NA	SLC24A6	NA	chr12:113736571-113747478	inner
CUST_4775_PI429285431	0.89518386	A	1.1357548	A	0.846410283054311	0	lncRNA	4720-2_{3001..4494}	"transcript_id ""ENST00000553932.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000553932.1"" | genecode_v17"	chr14	 39221545	 39223038	-	ENSG00000259070.1	ENST00000553932.1	LINC00639	LINC00639-001	NA	"hg19_refFlat_ZFP41:range=chr8:144332014-1443326105'pad=0,hg19_refFlat_ZFP41:range=chr8:144332014-1443326105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80"	NA	inter
CUST_17924_PI429285431	1.0479944	A	0.9214058	A	1.09170918874323	0	lncRNA	19656-1_{1..1920}	lnc-NCOA3-5:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NCOA3-5:7	chr20	 46524449	 46526368	+	lnc-NCOA3-5	lnc-NCOA3-5:7	XLOC_013543	linc-ARFGEF2-12	NA	NA	NA	inter
LNCA_21_P0007847	0.90719616	A	0.9269606	A	0.986393747497192	0	lncRNA	TCONS_00021193	NA	NA	NA	NA	XLOC_009850	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009850), lincRNA [TCONS_00021193]"	chr12:98110822-98110881	hs|12q23.1	Agilent_HUMAN_G3V2	TCONS_00021193	TCONS_00021193	chr12	 98110822	 98110881	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46526_PI429285431	1.7008698	A	1.8848847	A	0.880249922389202	0	lncRNA	50716-1_{1..904}	"gi|410170711|ref|XR_110594.4| PREDICTED: Homo sapiens uncharacterized LOC727751 (LOC727751), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410170711|ref|XR_110594.4| PREDICTED: Homo sapiens uncharacterized LOC727751 (LOC727751), misc_RNA"	NA	NA	NA	NA	NA	XR_110594.4	NA	NA	NA	NA	NA	Unknown
CUST_1806_PI429285431	1.5183973	A	1.7920367	A	0.827230107838472	0	lncRNA	1793-1_{1..681}	"transcript_id ""ENST00000507739.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507739.1"" | genecode_v17"	chr4	 76326405	 76327085	+	ENSG00000250735.1	ENST00000507739.1	RP11-567N4.3	RP11-567N4.3-002	NA	NA	NA	inter
CUST_40652_PI429285431	11.654082	P	12.362633	P	0.611934439056454	0	lncRNA	41391-1_{1..619}	n410197|NR_037141|lncRNA|Homosapiens||RefGeneNoncode|NR_037141||0.0257432|-0.1749599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410197|NR_037141|lncRNA|Homosapiens||RefGeneNoncode|NR_037141||0.0257432|-0.1749599	chr6	 42695313	 42695931	+	NA	NA	NA	NA	PRPH2	NA	chr6:42685313-42690358	inter
CUST_44679_PI429285431	6.156777	P	6.730967	P	0.671663250352839	0	lncRNA	49239-1_{1..1904}	"gi|212275242|ref|NR_015410.1| Homo sapiens long intergenic non-protein coding RNA 340 (LINC00340), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|212275242|ref|NR_015410.1| Homo sapiens long intergenic non-protein coding RNA 340 (LINC00340), non-coding RNA"	NA	NA	NA	NA	NA	NR_015410.1	NA	NA	NA	NA	NA	Unknown
CUST_53_PI429285431	1.816274	A	0.9180437	A	1.86377835314939	0	lncRNA	52-1_{1..357}	"transcript_id ""ENST00000553463.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000553463.1"" | genecode_v17"	chr14	 50474052	 50474408	-	ENSG00000258929.2	ENST00000553463.1	RP11-58E21.3	RP11-58E21.3-004	C14orf182	NA	chr14:50464052-50474238	inner
CUST_40324_PI429285431	0.898671	A	0.8979836	A	1.00047658290148	0	lncRNA	41127-1_{1..648}	n408364|NR_029461_4|lncRNA|Homosapiens||RefGeneNoncode|NR_029461_4||-1.0366700|-0.3928144	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408364|NR_029461_4|lncRNA|Homosapiens||RefGeneNoncode|NR_029461_4||-1.0366700|-0.3928144	chr6	  2884757	  2885404	+	NA	NA	NA	NA	SERPINB9	NA	chr6:2887504-2897488	inter
CUST_45176_PI429285431	1.6103551	A	0.95242274	A	1.5778197047218	0	lncRNA	49649-2_{3001..4005}	"gi|241982816|ref|NR_027878.1| Homo sapiens ADAM metallopeptidase domain 9 (ADAM9), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|241982816|ref|NR_027878.1| Homo sapiens ADAM metallopeptidase domain 9 (ADAM9), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_027878.1	NA	NA	NA	NA	NA	Unknown
CUST_4558_PI429285431	3.80609	P	2.6445017	A	2.23703573101041	0	lncRNA	4507-1_{1..2042}	"transcript_id ""ENST00000445646.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445646.2"" | genecode_v17"	chr13	 23425912	 23427953	+	ENSG00000229556.2	ENST00000445646.2	RP11-363G2.4	RP11-363G2.4-001	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_51303_PI429285431	4.0705657	P	3.8962564	P	1.12842403483144	0	lncRNA	54907-1_{1..957}	hg19_lincRNAsTranscripts_TCONS_l2_00008542 range=chr15:32888488-32891814 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008542 range=chr15:32888488-32891814 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 32888488	 32889444	+	NA	NA	NA	NA	LOC643699	NA	chr15:32885755-32896179	inter
CUST_36273_PI429285431	3.5164142	P	4.247645	P	0.602389780453733	0	lncRNA	37509-2_{3001..3277}	n344803|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_352|NULL|-1.3326500|-0.2229922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344803|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_352|NULL|-1.3326500|-0.2229922	chr19	 28265749	 28266025	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006505	0.9033287	A	0.9162249	A	0.991100869095512	0	lncRNA	TCONS_00017192	NA	NA	NA	NA	XLOC_008007	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008007), lincRNA [TCONS_00017192]"	chrX:70166630-70166689	hs|Xq13.1	Agilent_HUMAN_G3V2	TCONS_00017192	TCONS_00017192	chrX	 70166630	 70166689	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_344_PI429201921	5.9808784	P	6.315031	P	0.793249933328972	0	lncRNA	225-2_{3001..6000}	TC01006249.hg.1	TCONS_l2_00002826-XLOC_l2_001407 // Broad TUCP // linc-SMYD3 chr1:-:246679340-246687589 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:246679340-246687589	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00002826-XLOC_l2_001407	linc-SMYD3	chr1	246679340	246687589	-	NA	NA	NA	NA	SSBP3	NA	chr1:54871929-54872092	Unknown
CUST_23883_PI429285431	9.271004	P	8.777178	P	1.40817438012425	0	lncRNA	25441-2_{3001..3722}	lnc-DPM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DPM1-1:1	chr20	 49627473	 49628194	-	lnc-DPM1-1	lnc-DPM1-1:1	ENSG00000248832.1	RP5-955M13.3	KCNG1	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30chr20:49620193-49634577"	NA	inner
CUST_19056_PI429285431	2.6719918	A	3.3466215	P	0.626493002139969	0	lncRNA	20747-1_{1..1775}	lnc-RSPH1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RSPH1-2:1	chr21	 44034963	 44036737	-	lnc-RSPH1-2	lnc-RSPH1-2:1	ENSG00000225431	AP001626.1	NA	NA	NA	inter
CUST_39102_PI429285431	4.3125873	P	4.3064075	P	1.00429269829279	0	lncRNA	40078-1_{1..265}	n385654|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azw.2||-0.9335760|-0.1642709	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385654|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azw.2||-0.9335760|-0.1642709	chr9	102127201	102127465	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1049_PI429285431	0.8906264	A	0.9001224	A	0.993439489112641	0	lncRNA	1039-1_{1..523}	"transcript_id ""ENST00000432474.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432474.1"" | genecode_v17"	chr2	121311319	121311841	-	ENSG00000232140.1	ENST00000432474.1	AC073257.1	AC073257.1-001	NA	NA	NA	inter
CUST_43901_PI429285431	10.162968	P	10.330359	P	0.89045153723771	0	lncRNA	48615-1_{1..2339}	"gi|214010243|ref|NR_024519.1| Homo sapiens lectin, mannose-binding 2-like (LMAN2L), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|214010243|ref|NR_024519.1| Homo sapiens lectin, mannose-binding 2-like (LMAN2L), transcript variant 4, non-coding RNA"	Chr2	 97371666	 97374004	-	81562	NR_024519.1	NA	NA	NA	NA	NA	inter
CUST_36849_PI429285431	8.490125	P	8.491024	P	0.999377054795659	0	lncRNA	38014-1_{1..3000}	n345322|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_871|NULL|-1.4390300|-0.1893230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345322|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_871|NULL|-1.4390300|-0.1893230	chr16	 85198652	 85201651	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_36652_PI429285431	6.400274	P	6.49415	P	0.937001978966206	0	lncRNA	37843-1_{1..928}	n345147|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_696|NULL|-1.2772300|-0.3241601	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345147|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_696|NULL|-1.2772300|-0.3241601	chr11	 82783664	 82784591	-	NA	NA	NA	NA	RAB30	NA	chr11:82773664-82782884	inter
CUST_560_PI429285431	0.8996059	A	0.90119314	A	0.998900414057282	0	lncRNA	552-1_{1..510}	"transcript_id ""ENST00000444750.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444750.1"" | genecode_v17"	chr1	212341549	212342058	+	ENSG00000229983.1	ENST00000444750.1	RP11-15I11.2	RP11-15I11.2-001	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
CUST_12143_PI429285431	0.9188211	A	0.9076822	A	1.00775078011409	0	lncRNA	13742-1_{1..932}	lnc-CRYL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYL1-1:1	chr13	 21140815	 21141746	-	lnc-CRYL1-1	lnc-CRYL1-1:1	XLOC_010525	linc-CRYL1	IFT88	NA	chr13:21141208-21151197	inter
CUST_44629_PI429285431	0.92956215	A	1.3164409	A	0.764782411686628	0	lncRNA	49195-1_{1..1594}	"gi|222080080|ref|NR_026682.1| Homo sapiens uncharacterized LOC100268168 (LOC100268168), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|222080080|ref|NR_026682.1| Homo sapiens uncharacterized LOC100268168 (LOC100268168), transcript variant 1, non-coding RNA"	Chr5	172381785	172383378	-	100268168	NR_026682.1	NA	NA	NA	"hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20"	NA	inter
CUST_39911_PI429285431	6.119495	P	4.8991237	P	2.33006677468786	0	lncRNA	40792-1_{1..2314}	n406649|NR_024180|lncRNA|Homosapiens||RefGeneNoncode|NR_024180||6.4166300|-0.1245860	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406649|NR_024180|lncRNA|Homosapiens||RefGeneNoncode|NR_024180||6.4166300|-0.1245860	chr1	  9097004	  9099317	-	NA	NA	NA	NA	SLC2A5	NA	chr1:9097005-9148510	inner
LNCA_21_P0008207	0.8885989	A	0.8944181	A	0.995974561811982	0	lncRNA	TCONS_00022100	NA	NA	NA	NA	XLOC_010711	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010711), lincRNA [TCONS_00022100]"	chr13:105316801-105316742	hs|13q33.2	Agilent_HUMAN_G3V2	TCONS_00022100	TCONS_00022100	chr13	105316742	105316801	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29213_PI429285431	10.46764	P	10.535803	P	0.953851775433279	0	lncRNA	30960-1_{1..1210}	n326734|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000008137|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000008137|-1.1864700|-0.2626476	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326734|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000008137|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000008137|-1.1864700|-0.2626476	chr1	  1353364	  1354573	-	NA	NA	NA	NA	TMEM88B	NA	chr1:1361508-1363167	inner
CUST_10869_PI429285431	5.901297	P	5.433372	P	1.38311872427865	0	lncRNA	12408-1_{1..3000}	lnc-DEK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DEK-1:1	chr6	 18757484	 18760483	-	lnc-DEK-1	lnc-DEK-1:1	XLOC_005629	linc-DEK-6	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
CUST_44152_PI429285431	10.151769	P	10.684177	P	0.691399756203452	0	lncRNA	48813-1_{1..747}	"gi|397139021|ref|XR_110050.2| PREDICTED: Homo sapiens uncharacterized LOC100506301 (LOC100506301), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139021|ref|XR_110050.2| PREDICTED: Homo sapiens uncharacterized LOC100506301 (LOC100506301), misc_RNA"	NA	NA	NA	NA	NA	XR_110050.2	NA	NA	NA	NA	NA	Unknown
CUST_28631_PI429285431	0.8956224	A	1.365167	A	0.722192528519727	0	lncRNA	30319-1_{1..502}	n326005|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047657|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047657|-1.0167300|-0.4442067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326005|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047657|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047657|-1.0167300|-0.4442067	chr10	 39050989	 39051490	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40832_PI429285431	1.8032908	A	1.4455314	A	1.28143420000499	0	lncRNA	41535-1_{1..2305}	n410602|NR_037853_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037853_6||0.2111980|-0.2293342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410602|NR_037853_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037853_6||0.2111980|-0.2293342	chr6	  2877746	  2880050	-	NA	NA	NA	NA	SERPINB9	NA	chr6:2887504-2903545	inner
LNCA_21_P0006803	0.8852819	A	0.88885146	A	0.997528827935417	0	lncRNA	ENST00000449936	NA	NA	NA	NA	XLOC_008995	NA	ENST00000449936	NA	NA	"BROAD Institute lincRNA (XLOC_008995), lincRNA [TCONS_00018070]"	chr10:132001209-132001150	hs|10q26.3	Agilent_HUMAN_G3V2	ENST00000449936	ENST00000449936	chr10	132001150	132001209	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25568_PI429285431	0.89209956	A	0.89647555	A	0.996971390388466	0	lncRNA	27097-1_{1..734}	lnc-GTPBP8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTPBP8-1:1	chr3	112901900	112902633	+	lnc-GTPBP8-1	lnc-GTPBP8-1:1	ENSG00000240057.1	RP11-572M11.4	NA	"hg19_refFlat_C3orf17:range=chr3:112724383-1127384945'pad=0,hg19_refFlat_C3orf17:range=chr3:112724383-1127384945'pad=0 3'pad=0 strand=- repeatMasking=none,-100.30"	NA	inter
CUST_30445_PI429285431	8.642427	P	8.412776	P	1.17255126495989	0	lncRNA	32225-1_{1..694}	n335583|CR592316|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000271511|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000271511|-1.3209700|-0.3240810	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335583|CR592316|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000271511|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000271511|-1.3209700|-0.3240810	chr17	  1800647	  1801340	+	NA	NA	NA	NA	RPA1	NA	chr17:1790647-1802848	inner
CUST_44108_PI429285431	0.88985986	A	2.669775	A	0.291200524665019	0	lncRNA	48773-1_{1..1884}	"gi|377520104|ref|NR_046358.1| Homo sapiens chromosome 3 open reading frame 32 (C3orf32), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|377520104|ref|NR_046358.1| Homo sapiens chromosome 3 open reading frame 32 (C3orf32), transcript variant 4, non-coding RNA"	Chr3	  8661086	  8662969	-	51066	NR_046358.1	NA	NA	NA	NA	NA	inter
CUST_5584_PI429285431	2.191991	A	2.8895066	A	0.616633169035304	0	lncRNA	5513-1_{1..1337}	"transcript_id ""ENST00000567058.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567058.1"" | genecode_v17"	chr16	 65224876	 65226212	-	ENSG00000260834.1	ENST00000567058.1	RP11-256I9.2	RP11-256I9.2-001	NA	NA	NA	inter
CUST_26834_PI429285431	4.125246	P	4.492795	P	0.775098196055321	0	lncRNA	28348-1_{1..544}	n323905|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055825|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055825|-1.0984800|-0.3060046	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323905|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055825|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055825|-1.0984800|-0.3060046	chrX	 13908105	 13908648	-	NA	NA	NA	NA	GPM6B	NA	chrX:13898105-13926860	inner
CUST_29790_PI429285431	15.355697	P	15.557232	P	0.869624806686021	0	lncRNA	31553-1_{1..502}	n333498|BC032233|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000092589|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000092589|-0.9502660|-0.1016172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333498|BC032233|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000092589|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000092589|-0.9502660|-0.1016172	chr8	 67524925	 67525426	-	NA	NA	NA	NA	MYBL1	NA	chr8:67514925-67525480	inner
CUST_29733_PI429285431	10.589301	P	10.607249	P	0.987636458830036	0	lncRNA	31495-1_{1..1123}	n333406|BC009700|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087361|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087361|4.6782300|-0.0968719	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333406|BC009700|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087361|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087361|4.6782300|-0.0968719	chr20	 17640241	 17641363	-	NA	NA	NA	NA	RRBP1	NA	chr20:17630241-17662928	inner
CUST_45467_PI429285431	3.9711452	P	5.328621	P	0.390264516062917	0	lncRNA	49882-1_{1..2176}	"gi|215422346|ref|NR_003672.2| Homo sapiens small nucleolar RNA host gene 7 (non-protein coding) (SNHG7), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|215422346|ref|NR_003672.2| Homo sapiens small nucleolar RNA host gene 7 (non-protein coding) (SNHG7), transcript variant 1, non-coding RNA"	Chr9	139619667	139621842	-	84973	NR_003672.2	NA	NA	NA	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-57.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90"	NA	inter
CUST_17112_PI429285431	3.3774796	P	4.1877546	P	0.57027314468717	0	lncRNA	18822-1_{1..403}	lnc-ASB15-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASB15-2:2	chr7	123175659	123176061	+	lnc-ASB15-2	lnc-ASB15-2:2	XLOC_006223	linc-ASB15-1	IQUB	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00chr7:123165659-123174718"	NA	inter
CUST_17329_PI429285431	6.109496	P	6.3037696	P	0.874012852464969	0	lncRNA	19047-1_{1..308}	lnc-EPHA6-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPHA6-1:3	chr3	 96336991	 96337298	+	lnc-EPHA6-1	lnc-EPHA6-1:3	XLOC_002730	linc-EPHA6-1	NA	NA	NA	inter
CUST_31449_PI429285431	3.5171878	P	3.7812138	P	0.832760762875167	0	lncRNA	33216-1_{1..576}	n337918|AK131006|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|302|NULL|-0.9645780|-0.4228229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337918|AK131006|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|302|NULL|-0.9645780|-0.4228229	chr1	 49723082	 49723657	+	NA	NA	NA	NA	AGBL4	NA	chr1:49713082-49744966	inner
CUST_12401_PI429285431	1.9391189	A	2.1292033	A	0.876554439959485	0	lncRNA	14014-1_{1..2689}	lnc-FOXK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXK1-1:1	chr7	  4515791	  4518479	+	lnc-FOXK1-1	lnc-FOXK1-1:1	XLOC_005972	linc-FOXK1	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10"	NA	inter
LNCA_21_P0009733	1.4646523	A	1.0368612	A	1.34517241554391	0	lncRNA	TCONS_00027142	NA	NA	NA	NA	XLOC_013178	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013178), lincRNA [TCONS_00027142]"	chr19:58488139-58488198	hs|19q13.43	Agilent_HUMAN_G3V2	TCONS_00027142	TCONS_00027142	chr19	 58488139	 58488198	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003880	1.3273497	A	0.88555425	A	1.35829368759442	0	lncRNA	TCONS_00008988	NA	NA	NA	NA	XLOC_003840	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003840), lincRNA [TCONS_00008988]"	chr4:190497509-190497568	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008988	TCONS_00008988	chr4	190497509	190497568	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009006	0.88640827	A	0.8859603	A	1.00031055735543	0	lncRNA	TCONS_00024567	NA	NA	NA	NA	XLOC_011867	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011867), lincRNA [TCONS_00024567]"	chr16:4295409-4295350	hs|16p13.3	Agilent_HUMAN_G3V2	TCONS_00024567	TCONS_00024567	chr16	  4295350	  4295409	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49383_PI429285431	3.0234008	A	3.1484957	P	0.916943724967551	0	lncRNA	53197-1_{1..396}	hg19_lincRNAsTranscripts_TCONS_l2_00023092 range=chr5:126394424-126409165 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023092 range=chr5:126394424-126409165 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	126394424	126394819	-	NA	NA	NA	NA	C5orf63	NA	chr5:126384424-126409184	inner
CUST_353_PI429285431	8.843059	P	8.6660795	P	1.13051450294518	0	lncRNA	346-1_{1..427}	"transcript_id ""ENST00000602755.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000602755.1"" | genecode_v17"	chr1	109642815	109643241	+	ENSG00000270066.1	ENST00000602755.1	SCARNA2	SCARNA2-001	C1orf194	NA	chr1:109646068-109653241	inter
CUST_50171_PI429285431	0.9146942	A	0.91780573	A	0.997845575863632	0	lncRNA	53897-1_{1..780}	hg19_lincRNAsTranscripts_TCONS_l2_00029225 range=chr9:23895025-23898182 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029225 range=chr9:23895025-23898182 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 23895025	 23895804	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30"	NA	inter
CUST_3049_PI429285431	5.929775	P	6.0076976	P	0.947420897980237	0	lncRNA	3028-1_{1..642}	"transcript_id ""ENST00000521101.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521101.1"" | genecode_v17"	chr8	 29384829	 29385470	+	ENSG00000253632.1	ENST00000521101.1	RP11-486M23.1	RP11-486M23.1-001	NA	NA	NA	inter
CUST_42722_PI429285431	7.6671777	P	7.8119035	P	0.904551281106556	0	lncRNA	45660-1_{1..74}	ENST00000408612 ncrna:snoRNA chromosome:GRCh37:1:28905261:28905334:-1 gene:ENSG00000221539 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408612 ncrna:snoRNA chromosome:GRCh37:1:28905261:28905334:-1 gene:ENSG00000221539 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 28905261	 28905334	-	ENSG00000221539	ENST00000408612	NA	NA	TRNAU1AP	NA	chr1:28895261-28905057	inter
LNCA_21_P0007778	9.77751	P	10.383884	P	0.656845512811395	0	lncRNA	TCONS_00020968	NA	NA	NA	NA	XLOC_010238	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010238), lincRNA [TCONS_00020968]"	chr12:126467405-126467346	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020968	TCONS_00020968	chr12	126467346	126467405	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47326_PI429285431	0.8956205	A	0.88803273	A	1.00527329652352	0	lncRNA	51383-1_{1..544}	"gi|310124021|ref|XR_109629.1| PREDICTED: Homo sapiens uncharacterized LOC100506348 (LOC100506348), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124021|ref|XR_109629.1| PREDICTED: Homo sapiens uncharacterized LOC100506348 (LOC100506348), misc_RNA"	NA	NA	NA	NA	NA	XR_109629.1	NA	NA	NA	NA	NA	Unknown
CUST_40137_PI429285431	0.8845063	A	0.88401806	A	1.00033847945068	0	lncRNA	40975-2_{3001..4516}	n407731|NR_027249|lncRNA|Homosapiens||RefGeneNoncode|NR_027249||13.5521000|-0.1356071	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407731|NR_027249|lncRNA|Homosapiens||RefGeneNoncode|NR_027249||13.5521000|-0.1356071	chr12	104240526	104242041	-	NA	NA	NA	NA	HSP90B1	NA	chr12:104324189-104333989	inter
LNCA_21_P0007387	2.9159317	A	2.717515	A	1.14743839608331	0	lncRNA	TCONS_00019737	NA	NA	NA	NA	XLOC_009529	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009529), lincRNA [TCONS_00019737]"	chr11:96228167-96228108	hs|11q21	Agilent_HUMAN_G3V2	TCONS_00019737	TCONS_00019737	chr11	 96228108	 96228167	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002207	0.8907074	A	0.89075196	A	0.999969113838622	0	lncRNA	TCONS_00003663	NA	NA	NA	NA	XLOC_001453	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001453), lincRNA [TCONS_00003663]"	chr2:45402557-45402616	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00003663	TCONS_00003663	chr2	 45402557	 45402616	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46410_PI429285431	12.890664	P	13.415376	P	0.695097855946313	0	lncRNA	50624-1_{1..1048}	"gi|399498570|ref|NR_073081.1| Homo sapiens cysteine-rich protein 2 (CRIP2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|399498570|ref|NR_073081.1| Homo sapiens cysteine-rich protein 2 (CRIP2), transcript variant 4, non-coding RNA"	NW_004166863.1	   137942	   138989	+	1397	NR_073081.1	NA	NA	NA	NA	NA	Unknown
CUST_36657_PI429285431	0.88855314	A	1.6359143	A	0.595692144814119	0	lncRNA	37848-1_{1..1548}	n345153|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_702|NULL|-1.5243100|-0.2260566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345153|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_702|NULL|-1.5243100|-0.2260566	chr11	110087284	110088831	+	NA	NA	NA	NA	RDX	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50chr11:110100166-110101622"	NA	inner
CUST_40898_PI429285431	1.114682	A	0.90035295	A	1.16016423468274	0	lncRNA	41585-1_{1..1620}	n410725|NR_038146|lncRNA|Homosapiens||RefGeneNoncode|NR_038146||4.1878900|-0.0978258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410725|NR_038146|lncRNA|Homosapiens||RefGeneNoncode|NR_038146||4.1878900|-0.0978258	chr11	 89586009	 89587628	+	NA	NA	NA	NA	TRIM64B	NA	chr11:89576009-89606232	inter
CUST_6827_PI429285431	1.9062861	A	1.9196712	A	0.990765062075659	0	lncRNA	6775-1_{1..740}	"transcript_id ""ENST00000440205.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440205.1"" | genecode_v17"	chr21	 26768506	 26769245	-	ENSG00000185433.4	ENST00000440205.1	LINC00158	LINC00158-004	NA	NA	NA	inter
LNCA_21_P0006180	5.296654	P	5.6447124	P	0.785640713448596	0	lncRNA	TCONS_00016073	NA	NA	NA	NA	XLOC_007462	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007462), lincRNA [TCONS_00016073]"	chr9:95435697-95435756	hs|9q22.31	Agilent_HUMAN_G3V2	TCONS_00016073	TCONS_00016073	chr9	 95435697	 95435756	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006311	0.8902402	A	0.8909434	A	0.999512697672995	0	lncRNA	TCONS_00016465	NA	NA	NA	NA	XLOC_007830	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007830), lincRNA [TCONS_00016465]"	chr9:115505116-115505057	hs|9q32	Agilent_HUMAN_G3V2	TCONS_00016465	TCONS_00016465	chr9	115505057	115505116	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30683_PI429285431	0.9052141	A	0.8934805	A	1.00816627535804	0	lncRNA	32465-1_{1..408}	n336169|X92768|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324570|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324570|1.7562000|-0.2570984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336169|X92768|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324570|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324570|1.7562000|-0.2570984	chr14	 22433736	 22434143	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25401_PI429285431	2.3906777	A	2.8505015	A	0.727075052755751	0	lncRNA	26932-1_{1..793}	lnc-WDR72-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR72-1:3	chr15	 54267015	 54267807	-	lnc-WDR72-1	lnc-WDR72-1:3	ENSG00000259669.1	RP11-643A5.2	NA	NA	NA	inter
LNCA_21_P0001413	1.9072021	A	1.2454454	A	1.58200778579449	0	lncRNA	TCONS_00002226	NA	NA	NA	NA	XLOC_000545	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000545), lincRNA [TCONS_00002226]"	chr1:208907380-208909509	hs|1q32.2	Agilent_HUMAN_G3V2	TCONS_00002226	TCONS_00002226	chr1	208907380	208909509	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12630_PI429285431	0.9420306	A	2.9743378	A	0.24446380796385	0	lncRNA	14246-1_{1..824}	lnc-C15orf2-10:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-10:2	chr15	 24445341	 24446164	+	lnc-C15orf2-10	lnc-C15orf2-10:2	XLOC_011173	linc-C15orf2-9	NA	NA	NA	inter
CUST_34079_PI429285431	1.2826523	A	1.2402124	A	1.0298540539712	0	lncRNA	35608-1_{1..2872}	n340904|BC040316|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3369|NULL|-1.2470900|-0.3133965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340904|BC040316|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3369|NULL|-1.2470900|-0.3133965	chr6	 28104626	 28107497	+	NA	NA	NA	NA	ZNF192	NA	chr6:28109716-28117454	inter
CUST_128_PI429285431	8.405651	P	8.455169	P	0.96625909921285	0	lncRNA	120-1_{1..1807}	"transcript_id ""ENST00000446136.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000446136.1"" | genecode_v17"	chr1	   803451	   805257	-	ENSG00000230368.2	ENST00000446136.1	FAM41C	FAM41C-001	NA	"hg19_refFlat_TUBB4B:range=chr9:140135813-1401380085'pad=0,hg19_refFlat_TUBB4B:range=chr9:140135813-1401380085'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TUBB8:range=chr10:92997-951785'pad=0,hg19_refFlat_TUBB8:range=chr10:92997-951785'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_TUBB4A:range=chr19:6495175-65022235'pad=0,hg19_refFlat_TUBB4A:range=chr19:6495175-65022235'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_TUBB3:range=chr16:89989810-900022125'pad=0,hg19_refFlat_TUBB3:range=chr16:89989810-900022125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TUBB3:range=chr16:89999926-900022125'pad=0,hg19_refFlat_TUBB3:range=chr16:89999926-900022125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30"	NA	inter
CUST_9839_PI429285431	0.88953006	A	0.8957787	A	0.995678139038875	0	lncRNA	11359-1_{1..972}	lnc-NXPH2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NXPH2-2:1	chr2	139674686	139675657	-	lnc-NXPH2-2	lnc-NXPH2-2:1	XLOC_002338	linc-NXPH2-1	NA	NA	NA	inter
LNCA_19_P00320427	3.4942489	P	3.3923533	P	1.07318262318906	0	lncRNA	XR_132651	XR_132651	XR_132651	NA	NA	LOC100506694	uncharacterized LOC100506694	NA	THC2516977	NA	"PREDICTED: Homo sapiens hypothetical LOC100506694, transcript variant 4 (LOC100506694), miscRNA [XR_132651]"	chr19:28288786-28288845	hs|19q11	Agilent_HUMAN_G3V2	XR_132651	XR_132651	chr19	 28288786	 28288845	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18853_PI429285431	2.074832	A	0.9126855	A	2.23790144061197	0	lncRNA	20547-1_{1..327}	lnc-RTDR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RTDR1-1:1	chr22	 23247164	 23247490	-	lnc-RTDR1-1	lnc-RTDR1-1:1	ENSG00000240269	D87024.2	IGLL5	NA	chr22:23237164-23238014	inter
LNCA_21_P0004071	0.9020869	A	0.92485535	A	0.984341994503807	0	lncRNA	ENST00000513657	NA	NA	NA	NA	XLOC_004593	NA	ENST00000513657	NA	NA	"BROAD Institute lincRNA (XLOC_004593), lincRNA [TCONS_00009534]"	chr5:144830582-144830641	hs|5q32	Agilent_HUMAN_G3V2	ENST00000513657	ENST00000513657	chr5	144830582	144830641	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11354_PI429285431	9.633735	P	9.613521	P	1.01410989510066	0	lncRNA	12918-1_{1..340}	lnc-TSPEAR-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSPEAR-1:3	chr21	 45871025	 45871364	-	lnc-TSPEAR-1	lnc-TSPEAR-1:3	XLOC_014118	linc-C21orf2-2	TRPM2	NA	chr21:45861025-45862964	inter
LNCA_21_P0001696	0.9041929	A	0.92615974	A	0.984889080075026	0	lncRNA	TCONS_00002106	NA	NA	NA	NA	XLOC_000318	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000318), lincRNA [TCONS_00002106]"	chr1:101630396-101630455	hs|1p21.2	Agilent_HUMAN_G3V2	TCONS_00002106	TCONS_00002106	chr1	101630396	101630455	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26523_PI429285431	4.524576	P	4.7084894	P	0.880311854057076	0	lncRNA	28030-1_{1..817}	lnc-RP11-680F20.5.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-680F20.5.1-2:1	chr11	125823295	125824111	+	lnc-RP11-680F20.5.1-2	lnc-RP11-680F20.5.1-2:1	ENSG00000254967.2	RP11-680F20.6	CDON	NA	chr11:125826713-125833427	inter
CUST_48042_PI429285431	2.8415012	A	3.548773	P	0.612477265955433	0	lncRNA	51922-1_{1..750}	"gi|397138735|ref|XR_110646.2| PREDICTED: Homo sapiens uncharacterized LOC100506098, transcript variant 1 (LOC100506098), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397138735|ref|XR_110646.2| PREDICTED: Homo sapiens uncharacterized LOC100506098, transcript variant 1 (LOC100506098), misc_RNA"	NA	NA	NA	NA	NA	XR_110646.2	NA	NA	NA	NA	NA	Unknown
CUST_7945_PI429285431	14.405645	P	13.412857	P	1.99002699325419	0	lncRNA	9556-1_{1..643}	lnc-SERPINC1-1:26	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:26	chr1	173833622	173834264	-	lnc-SERPINC1-1	lnc-SERPINC1-1:26	ENSG00000234741	GAS5	DARS2	NA	chr1:173823622-173827682	inter
CUST_33619_PI429285431	2.4372818	A	1.3242706	A	2.16296631854692	0	lncRNA	35184-1_{1..245}	n340378|AF056446|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2839|NULL|-0.9997150|-0.2125746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340378|AF056446|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2839|NULL|-0.9997150|-0.2125746	chr5	 10431530	 10431774	+	NA	NA	NA	NA	6-Mar	NA	chr5:10421530-10435491	inner
CUST_21497_PI429285431	7.87287	P	8.11887	P	0.843231110250113	0	lncRNA	23115-1_{1..385}	lnc-AC007405.2.1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC007405.2.1-4:3	chr2	171207389	171207773	-	lnc-AC007405.2.1-4	lnc-AC007405.2.1-4:3	ENSG00000231898.2	AC012594.1	MYO3B	NA	chr2:171197389-171217453	inter
CUST_1911_PI429285431	2.5764973	A	1.2882967	A	2.44223258275257	0	lncRNA	1902-1_{1..566}	"transcript_id ""ENST00000513895.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513895.1"" | genecode_v17"	chr4	139036605	139037170	-	ENSG00000248307.1	ENST00000513895.1	LINC00616	LINC00616-004	NA	NA	NA	inter
CUST_6035_PI429285431	0.8955526	A	0.8964626	A	0.999369434955441	0	lncRNA	5961-1_{1..549}	"transcript_id ""ENST00000581556.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581556.1"" | genecode_v17"	chr18	  1099009	  1099557	+	ENSG00000263551.1	ENST00000581556.1	RP11-78F17.1	RP11-78F17.1-003	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
CUST_38724_PI429285431	6.327651	P	6.4814568	P	0.89887611544678	0	lncRNA	39719-1_{1..803}	n384215|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003buu.1||1.7037200|-0.1497209	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384215|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003buu.1||1.7037200|-0.1497209	chr3	 10059236	 10060038	-	NA	NA	NA	NA	FANCD2	NA	chr3:10068113-10077820	inter
CUST_19082_PI429285431	5.6402225	P	5.8388004	P	0.871409109482208	0	lncRNA	20773-1_{1..3000}	lnc-GLB1L2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLB1L2-1:7	chr11	134372838	134375837	+	lnc-GLB1L2-1	lnc-GLB1L2-1:7	ENSG00000255545	RP11-627G23.1	NA	NA	NA	inter
CUST_51011_PI429285431	0.88837063	A	0.89501154	A	0.995407450113943	0	lncRNA	54657-1_{1..2341}	hg19_lincRNAsTranscripts_TCONS_l2_00006854 range=chr13:52028334-52036829 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006854 range=chr13:52028334-52036829 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 52028334	 52030674	+	NA	NA	NA	NA	INTS6	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr13:52018334-52027275"	NA	inter
CUST_1956_PI429285431	1.040833	A	0.92627674	A	1.08264199839113	0	lncRNA	1949-1_{1..1117}	"transcript_id ""ENST00000455598.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455598.1"" | genecode_v17"	chr4	158493688	158494804	+	ENSG00000234111.2	ENST00000455598.1	RP11-364P22.1	RP11-364P22.1-002	NA	NA	NA	inter
LNCA_21_P0011264	6.4898677	P	7.0844374	P	0.662241946842996	0	lncRNA	ENST00000554945	XR_110279	XR_110279	NA	NA	XLOC_l2_004371	NA	ENST00000554945	THC2543594	NA	"PREDICTED: Homo sapiens hypothetical LOC100506157 (LOC100506157), miscRNA [XR_110279]"	chr14:35433219-35433160	hs|14q13.2	Agilent_HUMAN_G3V2	ENST00000554945	ENST00000554945	chr14	 35433160	 35433219	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1582_PI429285431	1.1243846	A	0.8960378	A	1.17149175459517	0	lncRNA	1568-4_{9001..9580}	"transcript_id ""ENST00000482787.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000482787.3"" | genecode_v17"	chr3	181679131	181679710	+	ENSG00000242512.3	ENST00000482787.3	RP11-416O18.1	RP11-416O18.1-001	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20"	NA	inter
CUST_45036_PI429285431	0.90654474	A	0.90228295	A	1.00295841522115	0	lncRNA	49533-1_{1..791}	"gi|224458299|ref|NR_027068.1| Homo sapiens EF-hand calcium binding domain 10 (EFCAB10), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224458299|ref|NR_027068.1| Homo sapiens EF-hand calcium binding domain 10 (EFCAB10), non-coding RNA"	Chr7	105205580	105206370	-	100130771	NR_027068.1	NA	NA	NA	"hg19_refFlat_RINT1:range=chr7:105172763-1052077585'pad=0,hg19_refFlat_RINT1:range=chr7:105172763-1052077585'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50"	NA	inter
CUST_39803_PI429285431	1.0493194	A	0.98517394	A	1.04546550414832	0	lncRNA	40712-1_{1..2884}	n406203|NR_003664|lncRNA|Homosapiens||RefGeneNoncode|NR_003664||4.1500300|-0.2450678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406203|NR_003664|lncRNA|Homosapiens||RefGeneNoncode|NR_003664||4.1500300|-0.2450678	chr7	 72490259	 72493142	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16248_PI429285431	0.8953569	A	0.908852	A	0.990689522894451	0	lncRNA	17953-1_{1..487}	lnc-UQCRFS1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UQCRFS1-5:2	chr19	 28491139	 28491625	-	lnc-UQCRFS1-5	lnc-UQCRFS1-5:2	XLOC_013285	linc-ZNF681-7	NA	NA	NA	inter
LNCA_21_P0011626	6.0881705	P	6.067437	P	1.01447513164758	0	lncRNA	THC2559218	NA	NA	NA	NA	XLOC_l2_005871	NA	NA	THC2559218	NA	"BROAD Institute lincRNA (XLOC_l2_005871), lincRNA [TCONS_l2_00011587]"	chr17:066111561-066111620	hs|17q24.2	Agilent_HUMAN_G3V2	THC2559218	THC2559218	chr17	 66111561	 66111620	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37137_PI429285431	9.648843	P	10.704993	P	0.48091372313422	0	lncRNA	38259-2_{3001..6000}	n345577|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1126|NULL|-1.5497000|-0.2635588	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345577|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1126|NULL|-1.5497000|-0.2635588	chr3	 44049929	 44052928	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2388_PI429285431	0.89979064	A	0.90677845	A	0.995168130421981	0	lncRNA	2381-1_{1..654}	"transcript_id ""ENST00000512571.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512571.1"" | genecode_v17"	chr5	144809431	144810084	+	ENSG00000248125.1	ENST00000512571.1	CTB-73N10.1	CTB-73N10.1-001	NA	NA	NA	inter
CUST_4969_PI429285431	1.0324168	A	1.0184675	A	1.00971581297256	0	lncRNA	4913-1_{1..430}	"transcript_id ""ENST00000556669.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556669.1"" | genecode_v17"	chr14	 97207528	 97207957	+	ENSG00000258979.1	ENST00000556669.1	RP11-433J8.2	RP11-433J8.2-001	VRK1	NA	chr14:97263684-97266950	inter
CUST_48356_PI429285431	0.88540626	A	1.4673386	A	0.668068369756738	0	lncRNA	52212-1_{1..615}	hg19_lincRNAsTranscripts_TCONS_l2_00001300 range=chr1:79578628-79589194 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001300 range=chr1:79578628-79589194 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 79578628	 79579242	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47655_PI429285431	6.332974	P	6.5043225	P	0.888012260098384	0	lncRNA	51639-1_{1..1925}	"gi|258645155|ref|NR_028476.1| Homo sapiens RNA binding motif protein, X-linked (RBMX), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|258645155|ref|NR_028476.1| Homo sapiens RNA binding motif protein, X-linked (RBMX), transcript variant 3, non-coding RNA"	ChrX	135955605	135957529	-	27316	NR_028476.1	NA	NA	NA	NA	NA	inter
LNCA_19_P00810982	6.3743935	P	6.558674	P	0.880087883390438	0	lncRNA	TCONS_00020073	NA	NA	NA	NA	XLOC_009459	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009459), lincRNA [TCONS_00020073]"	chr11:63946324-63946265	hs|11q13.1	Agilent_HUMAN_G3V2	TCONS_00020073	TCONS_00020073	chr11	 63946265	 63946324	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31626_PI429285431	3.3836212	P	3.6814566	P	0.813472003506758	0	lncRNA	33381-1_{1..1445}	n338149|BC040875|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|538|NULL|1.8561400|-0.2773773	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n338149|BC040875|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|538|NULL|1.8561400|-0.2773773	chr15	 95822516	 95823960	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30318_PI429285431	1.2212086	A	1.1271642	A	1.06735818626699	0	lncRNA	32094-1_{1..373}	n335229|AY540002|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255297|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255297|1.3983900|-0.3449429	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335229|AY540002|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255297|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255297|1.3983900|-0.3449429	chrX	 10469481	 10469853	-	NA	NA	NA	NA	MID1	NA	chrX:10459481-10545202	inner
LNCA_21_P0004251	0.88503015	A	1.6645868	A	0.58254578601278	0	lncRNA	TCONS_00010682	NA	NA	NA	NA	XLOC_004381	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004381), lincRNA [TCONS_00010682]"	chr5:51618364-51618423	hs|5q11.2	Agilent_HUMAN_G3V2	TCONS_00010682	TCONS_00010682	chr5	 51618364	 51618423	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42171_PI429285431	0.89770234	A	0.89733404	A	1.00025531869487	0	lncRNA	44220-1_{1..78}	ENST00000579189 ncrna:miRNA chromosome:GRCh37:9:20502263:20502340:-1 gene:ENSG00000264941 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579189 ncrna:miRNA chromosome:GRCh37:9:20502263:20502340:-1 gene:ENSG00000264941 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 20502263	 20502340	-	ENSG00000264941	ENST00000579189	NA	NA	MLLT3	NA	chr9:20492263-20512340	inner
CUST_6988_PI429285431	1.0928108	A	1.031749	A	1.04323328103074	0	lncRNA	6936-1_{1..678}	"transcript_id ""ENST00000450216.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450216.1"" | genecode_v17"	chr22	 39317232	 39317909	+	ENSG00000235209.1	ENST00000450216.1	CTA-150C2.13	CTA-150C2.13-001	NA	NA	NA	inter
CUST_26504_PI429285431	2.9826655	A	2.4736757	A	1.42305340006742	0	lncRNA	28012-1_{1..572}	lnc-PINK1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PINK1-2:1	chr1	 21070330	 21070901	+	lnc-PINK1-2	lnc-PINK1-2:1	ENSG00000203394.2	RP5-930J4.4	HP1BP3	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70chr1:21069171-21080455"	NA	inner
LNCA_21_P0010440	0.8835139	A	0.884886	A	0.999049384874663	0	lncRNA	TCONS_00029904	NA	NA	NA	NA	XLOC_014369	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014369), lincRNA [TCONS_00029904]"	chr22:37861569-37861510	hs|22q13.1	Agilent_HUMAN_G3V2	TCONS_00029904	TCONS_00029904	chr22	 37861510	 37861569	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34464_PI429285431	1.3265411	A	0.98740274	A	1.2650008549812	0	lncRNA	35936-2_{3001..6000}	n341338|BX648938|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3807|NULL|-1.0035600|-0.3113025	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341338|BX648938|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3807|NULL|-1.0035600|-0.3113025	chr7	139642477	139645476	+	NA	NA	NA	NA	TBXAS1	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50chr7:139629477-139656962"	NA	inter
CUST_43849_PI429285431	0.8806581	A	0.8793314	A	1.00092002132467	0	lncRNA	48572-1_{1..810}	"gi|310118934|ref|XR_109940.1| PREDICTED: Homo sapiens uncharacterized LOC100506934 (LOC100506934), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118934|ref|XR_109940.1| PREDICTED: Homo sapiens uncharacterized LOC100506934 (LOC100506934), misc_RNA"	NA	NA	NA	NA	NA	XR_109940.1	NA	NA	NA	NA	NA	Unknown
CUST_7903_PI429285431	0.9036068	A	0.8948915	A	1.00605926917473	0	lncRNA	9518-1_{1..3000}	lnc-AC015804.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC015804.1-2:1	chr17	 75532322	 75535321	-	lnc-AC015804.1-2	lnc-AC015804.1-2:1	ENSG00000250179	ENST00000543179	NA	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	inter
CUST_39650_PI429285431	6.8771424	P	7.2402697	P	0.777477430085256	0	lncRNA	40589-1_{1..647}	n405227|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000322486||-1.0970700|-0.1432130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405227|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000322486||-1.0970700|-0.1432130	chr7	    87616	    88262	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12314_PI429285431	0.8781154	A	1.5475553	A	0.628750740874705	0	lncRNA	13927-2_{3001..3907}	lnc-TP53TG3-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TP53TG3-7:1	chr16	 32267688	 32268594	-	lnc-TP53TG3-7	lnc-TP53TG3-7:1	XLOC_011918	linc-C16orf58-1	LOC729264	"hg19_refFlat_TP53TG3B:range=chr16:33262150-332632525'pad=0,hg19_refFlat_TP53TG3B:range=chr16:33262150-332632525'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3B:range=chr16:32686316-326874185'pad=0,hg19_refFlat_TP53TG3B:range=chr16:32686316-326874185'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_TP53TG3C:range=chr16:33205615-332071605'pad=0,hg19_refFlat_TP53TG3C:range=chr16:33205615-332071605'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3:range=chr16:32686316-326874185'pad=0,hg19_refFlat_TP53TG3:range=chr16:32686316-326874185'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_TP53TG3B:range=chr16:33205615-332067175'pad=0,hg19_refFlat_TP53TG3B:range=chr16:33205615-332067175'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3:range=chr16:32685873-326874185'pad=0,hg19_refFlat_TP53TG3:range=chr16:32685873-326874185'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_TP53TG3:range=chr16:33205615-332067175'pad=0,hg19_refFlat_TP53TG3:range=chr16:33205615-332067175'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3B:range=chr16:32685873-326874185'pad=0,hg19_refFlat_TP53TG3B:range=chr16:32685873-326874185'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_TP53TG3:range=chr16:33205615-332071605'pad=0,hg19_refFlat_TP53TG3:range=chr16:33205615-332071605'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3C:range=chr16:33205615-332067175'pad=0,hg19_refFlat_TP53TG3C:range=chr16:33205615-332067175'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3:range=chr16:33262150-332636955'pad=0,hg19_refFlat_TP53TG3:range=chr16:33262150-332636955'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3C:range=chr16:32685873-326874185'pad=0,hg19_refFlat_TP53TG3C:range=chr16:32685873-326874185'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_TP53TG3C:range=chr16:33262150-332632525'pad=0,hg19_refFlat_TP53TG3C:range=chr16:33262150-332632525'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3C:range=chr16:32686316-326874185'pad=0,hg19_refFlat_TP53TG3C:range=chr16:32686316-326874185'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_TP53TG3B:range=chr16:33262150-332636955'pad=0,hg19_refFlat_TP53TG3B:range=chr16:33262150-332636955'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3D:range=chr16:32264675-322662245'pad=0,hg19_refFlat_TP53TG3D:range=chr16:32264675-322662245'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3C:range=chr16:33262150-332636955'pad=0,hg19_refFlat_TP53TG3C:range=chr16:33262150-332636955'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3:range=chr16:33262150-332632525'pad=0,hg19_refFlat_TP53TG3:range=chr16:33262150-332632525'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_TP53TG3B:range=chr16:33205615-332071605'pad=0,hg19_refFlat_TP53TG3B:range=chr16:33205615-332071605'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30chr16:32254688-32267243"	NA	inner
CUST_3734_PI429285431	0.884886	A	0.88810754	A	0.997769489924795	0	lncRNA	3703-1_{1..575}	"transcript_id ""ENST00000531808.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531808.1"" | genecode_v17"	chr10	 77043559	 77044133	+	ENSG00000226051.2	ENST00000531808.1	ZNF503-AS1	ZNF503-AS1-007	ZNF503	NA	chr10:77141975-77143258	inter
CUST_34071_PI429285431	0.90468335	A	0.89990747	A	1.00331587314149	0	lncRNA	35600-1_{1..529}	n340894|Z83946|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3359|NULL|-1.0914800|-0.3644622	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340894|Z83946|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3359|NULL|-1.0914800|-0.3644622	chr6	 25914309	 25914837	+	NA	NA	NA	NA	SLC17A2	NA	chr6:25912982-25924838	inner
LNCA_21_P0005111	7.898492	P	7.825384	P	1.05198052740865	0	lncRNA	TCONS_00012438	NA	NA	NA	NA	XLOC_005208	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005208), lincRNA [TCONS_00012438]"	chr6:25999389-25999448	hs|6p22.2	Agilent_HUMAN_G3V2	TCONS_00012438	TCONS_00012438	chr6	 25999389	 25999448	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14985_PI429285431	0.8826957	A	0.8805589	A	1.00148221429077	0	lncRNA	16648-1_{1..1121}	lnc-GPR98-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-GPR98-4:1	chr5	 91630031	 91631151	+	lnc-GPR98-4	lnc-GPR98-4:1	XLOC_004471	linc-NR2F1-5	NA	NA	NA	inter
CUST_48720_PI429285431	7.262665	P	7.6141543	P	0.783774586421723	0	lncRNA	52562-1_{1..1143}	hg19_lincRNAsTranscripts_TCONS_l2_00013981 range=chr2:130750494-130751706 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013981 range=chr2:130750494-130751706 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	130750494	130751636	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31121_PI429285431	15.004722	P	15.24611	P	0.845931060369714	0	lncRNA	32916-1_{1..643}	n337427|DQ854814|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393894|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393894|-1.2362600|-0.1142556	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337427|DQ854814|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393894|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393894|-1.2362600|-0.1142556	chr15	 73660612	 73661254	-	NA	NA	NA	NA	HCN4	NA	chr15:73650612-73661605	inner
LNCA_33_P3265679	1.7432115	A	2.6215408	A	0.543997037508101	0	lncRNA	XR_112616	XR_112616	XR_112616	   389199	Hs.529369	LOC389199	uncharacterized LOC389199	ENST00000429019	THC2487143	NA	"PREDICTED: Homo sapiens hypothetical LOC389199 (LOC389199), miscRNA [XR_112616]"	chr4:7941964-7942023	hs|4p16.1	Agilent_HUMAN_G3V2	XR_112616	XR_112616	chr4	  7941964	  7942023	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25415_PI429285431	0.9047079	A	0.9074747	A	0.998084038183483	0	lncRNA	26945-1_{1..387}	lnc-OR3A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-OR3A1-1:1	chr17	  3289419	  3289805	-	lnc-OR3A1-1	lnc-OR3A1-1:1	ENSG00000262670.1	RP11-64J4.2	NA	NA	NA	inter
LNCA_21_P0002872	0.88993156	A	2.140472	A	0.420290735348881	0	lncRNA	ENST00000474711	NA	NA	NA	NA	XLOC_003212	NA	ENST00000474711	NA	NA	"BROAD Institute lincRNA (XLOC_003212), lincRNA [TCONS_00005810]"	chr3:110246391-110246332	hs|3q13.13	Agilent_HUMAN_G3V2	ENST00000474711	ENST00000474711	chr3	110246332	110246391	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002290	0.8890175	A	0.889956	A	0.999349692912415	0	lncRNA	TCONS_00003851	NA	NA	NA	NA	XLOC_001659	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001659), lincRNA [TCONS_00003851]"	chr2:127511509-127511568	hs|2q14.3	Agilent_HUMAN_G3V2	TCONS_00003851	TCONS_00003851	chr2	127511509	127511568	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37976_PI429285431	1.774301	A	1.3443921	A	1.34714850753335	0	lncRNA	39064-1_{1..441}	n346530|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2080|NULL|-1.6023800|-0.2045870	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346530|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2080|NULL|-1.6023800|-0.2045870	chr14	 38472388	 38472828	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48990_PI429285431	10.374365	P	10.269214	P	1.07560696321007	0	lncRNA	52823-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00019107 range=chr3:196181573-196192929 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019107 range=chr3:196181573-196192929 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	196184573	196187572	+	NA	NA	NA	NA	RNF168	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10chr3:196195654-196202929"	NA	inter
CUST_43171_PI429285431	0.8855561	A	0.8862119	A	0.999545537378424	0	lncRNA	47985-1_{1..553}	ENST00000602411 havana:sense_intronic chromosome:GRCh37:3:9977390:9977942:1 gene:ENSG00000269894 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602411 havana:sense_intronic chromosome:GRCh37:3:9977390:9977942:1 gene:ENSG00000269894 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr3	  9977390	  9977942	+	ENSG00000269894	ENST00000602411	NA	NA	IL17RC	NA	chr3:9967390-9975305	inner
LNCA_21_P0004883	8.275424	P	8.4234	P	0.902515741167342	0	lncRNA	TCONS_00011816	NA	NA	NA	NA	XLOC_005290	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005290), lincRNA [TCONS_00011816]"	chr6:42424601-42424660	hs|6p21.1	Agilent_HUMAN_G3V2	TCONS_00011816	TCONS_00011816	chr6	 42424601	 42424660	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006230	1.9947579	A	2.7237675	A	0.60331794524095	0	lncRNA	TCONS_00016167	NA	NA	NA	NA	XLOC_007577	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007577), lincRNA [TCONS_00016167]"	chr9:130921806-130921865	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_00016167	TCONS_00016167	chr9	130921806	130921865	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12668_PI429285431	7.806053	P	7.7244854	P	1.05816719681336	0	lncRNA	14285-1_{1..788}	lnc-RP1-239B22.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP1-239B22.1.1-1:2	chr11	 17403023	 17403810	+	lnc-RP1-239B22.1.1-1	lnc-RP1-239B22.1.1-1:2	XLOC_009079	linc-MYOD1	B7H6	NA	chr11:17393023-17398868	inter
CUST_26308_PI429285431	9.482252	P	9.570594	P	0.940603105157267	0	lncRNA	27814-1_{1..428}	lnc-VPS4A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-VPS4A-1:1	chr16	 69275762	 69276189	+	lnc-VPS4A-1	lnc-VPS4A-1:1	ENSG00000265113.1	RP11-70O5.2	SNTB2	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70chr16:69265762-69285832"	NA	inner
LNCA_21_P0005258	0.9016846	A	1.7116159	A	0.570409019715135	0	lncRNA	ENST00000488818	NA	NA	NA	NA	XLOC_006236	NA	ENST00000488818	THC2613413	NA	"BROAD Institute lincRNA (XLOC_006236), lincRNA [TCONS_00013075]"	chr7:126061517-126061576	hs|7q31.33	Agilent_HUMAN_G3V2	ENST00000488818	ENST00000488818	chr7	126061517	126061576	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15354_PI429285431	0.89269423	A	1.0555184	A	0.893274714529306	0	lncRNA	17036-1_{1..988}	lnc-SREK1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SREK1-1:3	chr5	 65618661	 65619648	+	lnc-SREK1-1	lnc-SREK1-1:3	XLOC_004408	linc-MAST4-2	NA	NA	NA	inter
CUST_49041_PI429285431	0.90452844	A	1.0946304	A	0.876543770897864	0	lncRNA	52870-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00021330 range=chr4:144497028-144617731 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021330 range=chr4:144497028-144617731 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	144497028	144500027	-	NA	NA	NA	NA	FREM3	NA	chr4:144498560-144621828	inner
CUST_35831_PI429285431	1.2438643	A	1.2295913	A	1.0099423900866	0	lncRNA	37233-2_{3001..6000}	n344503|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_51|NULL|-1.2547000|-0.2238021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344503|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_51|NULL|-1.2547000|-0.2238021	chr14	 77428899	 77431898	+	NA	NA	NA	NA	NA	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.10;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-58.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-62.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60"	NA	inter
CUST_15813_PI429285431	0.8915077	A	0.90626067	A	0.989826128000393	0	lncRNA	17503-1_{1..922}	lnc-NGLY1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NGLY1-1:1	chr3	 25915132	 25916053	-	lnc-NGLY1-1	lnc-NGLY1-1:1	XLOC_003069	linc-NGLY1-1	NA	NA	NA	inter
CUST_51910_PI429285431	6.109583	P	6.1429105	P	0.97716391945035	0	lncRNA	55453-1_{1..412}	hg19_lincRNAsTranscripts_TCONS_l2_00013351 range=chr19:59097652-59100861 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013351 range=chr19:59097652-59100861 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 59097652	 59098063	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15281_PI429285431	8.790562	P	8.769039	P	1.01503044464412	0	lncRNA	16956-1_{1..706}	lnc-CLN8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLN8-1:1	chr8	  1748840	  1749545	+	lnc-CLN8-1	lnc-CLN8-1:1	XLOC_006688	linc-ARHGEF10	NA	NA	NA	inter
CUST_29274_PI429285431	3.5439715	P	3.7630477	P	0.859115377151627	0	lncRNA	31025-1_{1..415}	n332383|AM998488|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500269|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500269|1.1950300|-0.1669602	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332383|AM998488|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500269|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500269|1.1950300|-0.1669602	chr18	 45567279	 45567693	-	NA	NA	NA	NA	ZBTB7C	NA	chr18:45557279-45663680	inner
CUST_6929_PI429285431	0.90932256	A	0.927942	A	0.98717691310868	0	lncRNA	6881-1_{1..3000}	"transcript_id ""ENST00000577456.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000577456.1"" | genecode_v17"	chr22	 20632023	 20635022	-	ENSG00000223579.2	ENST00000577456.1	AC011718.2	AC011718.2-004	LOC729461	NA	chr22:20622023-20656782	inter
CUST_50276_PI429285431	8.238005	P	7.0544686	P	2.27132853668988	0	lncRNA	53999-1_{1..383}	hg19_lincRNAsTranscripts_TCONS_l2_00029384 range=chr9:70181477-70182246 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029384 range=chr9:70181477-70182246 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 70181477	 70181859	-	NA	NA	NA	NA	FOXD4L4	NA	chr9:70181086-70192246	inter
CUST_44398_PI429285431	2.7568107	A	1.8127801	A	1.92389571530925	0	lncRNA	49014-1_{1..2318}	"gi|300795836|ref|NR_034075.1| Homo sapiens THAP9 antisense RNA 1 (THAP9-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300795836|ref|NR_034075.1| Homo sapiens THAP9 antisense RNA 1 (THAP9-AS1), transcript variant 1, non-coding RNA"	Chr4	 83814605	 83816922	-	100499177	NR_034075.1	NA	NA	NA	"hg19_refFlat_THAP9:range=chr4:83821956-838400775'pad=0,hg19_refFlat_THAP9:range=chr4:83821956-838400775'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.40"	NA	inter
CUST_50651_PI429285431	0.89020175	A	0.948383	A	0.960474189190081	0	lncRNA	54329-1_{1..317}	hg19_lincRNAsTranscripts_TCONS_l2_00002973 range=chr10:37550695-37553558 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002973 range=chr10:37550695-37553558 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 37550695	 37551011	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_100_PI429201921	0.8929273	A	0.9051533	A	0.991561389227616	0	lncRNA	103-1_{1..2909}	TC05003024.hg.1	 TCONS_00010937-XLOC_004844 // Rinn lincRNAs // linc-C5orf43-5 chr5:-:61028622-61031526 // chr5 // 100 // 100 // 0 // --- // 0 /// TCONS_00009676-XLOC_004844 // Rinn lincRNAs // linc-C5orf43-5 chr5:-:61030964-61031496 // chr5 // 100 // 100 // 0 // --- // 0///TCONS_00009283-XLOC_004844 // Rinn lincRNAs // linc-C5orf43-5 chr5:-:61028616-61031495 // chr5 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr5:-:61028616-61031495	NA	Affy_HUMAN_HTA2.0	TCONS_00009283-XLOC_004844	linc-C5orf43-5	chr5	 61028616	 61031495	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26435_PI429285431	5.788587	P	5.8592067	P	0.952228886638952	0	lncRNA	27942-1_{1..338}	lnc-PSMB9-12:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PSMB9-12:1	chr6	 32938528	 32938865	+	lnc-PSMB9-12	lnc-PSMB9-12:1	ENSG00000223837.2	BRD2-IT1	BRD2	NA	chr6:32936437-32948663	inner
CUST_26063_PI429285431	1.6364297	A	2.2155313	A	0.669380486542872	0	lncRNA	27576-1_{1..569}	lnc-FAM71B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM71B-1:1	chr5	156651356	156651924	-	lnc-FAM71B-1	lnc-FAM71B-1:1	ENSG00000253980.1	CTB-4E7.1	ITK	NA	chr5:156641356-156661390	inner
CUST_18677_PI429285431	5.3003173	P	5.649662	P	0.784940552121768	0	lncRNA	20378-1_{1..856}	lnc-GTF2F2-2:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GTF2F2-2:15	chr13	 45955277	 45956132	+	lnc-GTF2F2-2	lnc-GTF2F2-2:15	ENSG00000170919	XXyac-R12DG2.2	NA	NA	NA	inter
CUST_18085_PI429285431	1.747623	A	1.2887987	A	1.37442130016206	0	lncRNA	19820-1_{1..777}	lnc-CTTNBP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTTNBP2-3:1	chr7	117823969	117824745	-	lnc-CTTNBP2-3	lnc-CTTNBP2-3:1	XLOC_006578	linc-CTTNBP2-1	NAA38	NA	chr7:117824086-117833998	inter
CUST_12766_PI429285431	8.797529	P	8.947809	P	0.901075563802868	0	lncRNA	14389-1_{1..521}	lnc-PHB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHB-2:1	chr17	 47566892	 47567412	-	lnc-PHB-2	lnc-PHB-2:1	XLOC_012507	linc-PHB-2	NGFR	NA	chr17:47572655-47576925	inter
LNCA_19_P00322453	0.8938975	A	2.4528708	A	0.339392526059446	0	lncRNA	TCONS_l2_00020232	NA	NA	NA	NA	XLOC_l2_010405	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010405), lincRNA [TCONS_l2_00020232]"	chr3:156470911-156470852	hs|3q25.31	Agilent_HUMAN_G3V2	TCONS_l2_00020232	TCONS_l2_00020232	chr3	156470852	156470911	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52006_PI429285431	1.7292392	A	1.3647325	A	1.28744134006108	0	lncRNA	55539-1_{1..1184}	hg19_lincRNAsTranscripts_TCONS_l2_00017132 range=chr21:15215452-15218831 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017132 range=chr21:15215452-15218831 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 15215452	 15216635	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30770_PI429285431	7.5738964	P	7.4423375	P	1.09547677625875	0	lncRNA	32555-1_{1..395}	n336608|Z36798|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327106|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327106|1.2424300|-0.1465020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336608|Z36798|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327106|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327106|1.2424300|-0.1465020	chr19	 11546469	 11546863	+	NA	NA	NA	NA	CCDC151	NA	chr19:11536469-11545980	inner
LNCA_21_P0002231	0.889206	A	0.89555925	A	0.995605944908436	0	lncRNA	BC038723	NA	BC038723	NA	NA	XLOC_001504	NA	NA	THC2644378	NA	"BROAD Institute lincRNA (XLOC_001504), lincRNA [TCONS_00003717]"	chr2:65981906-65981965	hs|2p14	Agilent_HUMAN_G3V2	BC038723	BC038723	chr2	 65981906	 65981965	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7141_PI429285431	1.42685	A	1.5153282	A	0.940514310164383	0	lncRNA	7077-1_{1..512}	"transcript_id ""ENST00000452889.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000452889.1"" | genecode_v17"	chrY	  9748407	  9748918	+	ENSG00000239225.1	ENST00000452889.1	TTTY23	TTTY23-001	NA	NA	NA	inter
CUST_13683_PI429285431	3.7745261	P	4.1113925	P	0.791759182910691	0	lncRNA	15323-1_{1..818}	lnc-XRCC2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-XRCC2-3:1	chr7	153221094	153221911	-	lnc-XRCC2-3	lnc-XRCC2-3:1	XLOC_006658	linc-XRCC2-2	NA	NA	NA	inter
CUST_15843_PI429285431	1.55197	A	1.1550652	A	1.31668003462182	0	lncRNA	17535-1_{1..534}	lnc-DRGX-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DRGX-2:1	chr10	 50506854	 50507387	-	lnc-DRGX-2	lnc-DRGX-2:1	XLOC_008817	linc-C10orf128-2	C10orf71	NA	chr10:50507187-50517063	inter
CUST_34126_PI429285431	0.8924864	A	0.8859291	A	1.00455551897776	0	lncRNA	35647-1_{1..2669}	n340961|AF090920|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3426|NULL|-0.3217400|-0.2816032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340961|AF090920|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3426|NULL|-0.3217400|-0.2816032	chr11	  7536008	  7538676	-	NA	NA	NA	NA	PPFIBP2	NA	chr11:7535001-7548677	inner
LNCA_21_P0009467	0.884172	A	0.8867975	A	0.9981817970148	0	lncRNA	TCONS_00026299	NA	NA	NA	NA	XLOC_012643	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012643), lincRNA [TCONS_00026299]"	chr18:22081234-22081293	hs|18q11.2	Agilent_HUMAN_G3V2	TCONS_00026299	TCONS_00026299	chr18	 22081234	 22081293	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8473_PI429285431	0.9138322	A	2.2221656	A	0.403787064741096	0	lncRNA	10039-1_{1..3000}	lnc-CTU2-6:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CTU2-6:5	chr16	 88743373	 88746372	+	lnc-CTU2-6	lnc-CTU2-6:5	ENSG00000248168	AC138028.2	SNAI3	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SNAI3:range=chr16:88744856-887528145'pad=0,hg19_refFlat_SNAI3:range=chr16:88744856-887528145'pad=0 3'pad=0 strand=- repeatMasking=none,-96.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr16:88744090-88752882"	NA	inter
CUST_41187_PI429285431	0.8996025	A	0.8960081	A	1.00249455446208	0	lncRNA	42039-1_{1..73}	ENST00000583284 ncrna:miRNA chromosome:GRCh37:1:234442213:234442285:1 gene:ENSG00000264377 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583284 ncrna:miRNA chromosome:GRCh37:1:234442213:234442285:1 gene:ENSG00000264377 gene_biotype:miRNA transcript_biotype:miRNA	chr1	234442213	234442285	+	ENSG00000264377	ENST00000583284	NA	NA	SLC35F3	NA	chr1:234432213-234452285	inner
CUST_24683_PI429285431	0.90778697	A	0.9376608	A	0.979505955927132	0	lncRNA	26230-1_{1..515}	lnc-GTDC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTDC1-1:1	chr2	144533572	144534086	-	lnc-GTDC1-1	lnc-GTDC1-1:1	ENSG00000257226.1	CTD-2252P21.1	ARHGAP15	NA	chr2:144523572-144525921	inter
CUST_407_PI429285431	1.3837178	A	1.2186307	A	1.12123376836535	0	lncRNA	399-1_{1..837}	"transcript_id ""ENST00000419027.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000419027.1"" | genecode_v17"	chr1	143464645	143465481	-	ENSG00000185044.9	ENST00000419027.1	RP11-435B5.4	RP11-435B5.4-007	NA	NA	NA	inter
LNCA_21_P0004824	9.458144	P	9.676355	P	0.859630752565252	0	lncRNA	TCONS_00011651	NA	NA	NA	NA	XLOC_005133	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005133), lincRNA [TCONS_00011651]"	chr6:3258348-3258407	hs|6p25.2	Agilent_HUMAN_G3V2	TCONS_00011651	TCONS_00011651	chr6	  3258348	  3258407	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48791_PI429285431	8.061611	P	8.354868	P	0.816057661648666	0	lncRNA	52629-1_{1..1092}	hg19_lincRNAsTranscripts_TCONS_l2_00014251 range=chr2:220362131-220363411 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014251 range=chr2:220362131-220363411 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	220362131	220363222	+	NA	NA	NA	NA	SPEG	NA	chr2:220352131-220358354	inter
CUST_40460_PI429285431	1.2830247	A	0.88095194	A	1.32140504691235	0	lncRNA	41232-1_{1..3000}	n409378|NR_033760|lncRNA|Homosapiens||RefGeneNoncode|NR_033760||1.8295700|-0.2944327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409378|NR_033760|lncRNA|Homosapiens||RefGeneNoncode|NR_033760||1.8295700|-0.2944327	chr6	 52604260	 52607259	-	NA	NA	NA	NA	GSTA2	NA	chr6:52614885-52619957	inter
CUST_16923_PI429285431	3.3380437	P	2.581178	A	1.689815457146	0	lncRNA	18634-1_{1..1442}	lnc-AC007405.7.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC007405.7.1-1:1	chr2	171634154	171635595	+	lnc-AC007405.7.1-1	lnc-AC007405.7.1-1:1	XLOC_001748	linc-GAD1-1	LOC285141	NA	chr2:171640296-171645130	inter
CUST_34000_PI429285431	0.88131624	A	0.88201845	A	0.999513383554545	0	lncRNA	35537-1_{1..2442}	n340814|AK093963|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3277|NULL|2.7592200|-0.3324835	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n340814|AK093963|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3277|NULL|2.7592200|-0.3324835	chr17	 68163101	 68165542	-	NA	NA	NA	NA	KCNJ2	NA	chr17:68165676-68175543	inter
CUST_28292_PI429285431	2.6560454	A	3.1313975	A	0.719291220436442	0	lncRNA	29932-1_{1..1359}	n325592|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000254468|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000254468|-0.9968330|-0.3315007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325592|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000254468|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000254468|-0.9968330|-0.3315007	chr16	 21927030	 21928388	+	NA	NA	NA	NA	UQCRC2	"hg19_refFlat_SMG1:range=chr16:18820891-189373635'pad=0,hg19_refFlat_SMG1:range=chr16:18820891-189373635'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90chr16:21950186-21994668"	NA	inner
CUST_49530_PI429285431	0.881565	A	0.8823756	A	0.999438292712077	0	lncRNA	53322-1_{1..1188}	hg19_lincRNAsTranscripts_TCONS_l2_00024770 range=chr6:44061485-44067500 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024770 range=chr6:44061485-44067500 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 44061485	 44062672	-	NA	NA	NA	NA	MRPL14	NA	chr6:44056862-44077500	inter
CUST_24222_PI429285431	1.9911946	A	2.2917318	A	0.811950003440768	0	lncRNA	25773-1_{1..571}	lnc-GLYATL2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLYATL2-2:2	chr11	 58825845	 58826415	-	lnc-GLYATL2-2	lnc-GLYATL2-2:2	ENSG00000255240.1	RP11-142C4.6	NA	NA	NA	inter
CUST_6096_PI429285431	3.5131814	P	3.984018	P	0.72154606128982	0	lncRNA	6022-1_{1..1955}	"transcript_id ""ENST00000581457.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581457.1"" | genecode_v17"	chr18	 14477954	 14479908	-	ENSG00000265766.1	ENST00000581457.1	CXADRP3	CXADRP3-001	POTEC	NA	chr18:14485803-14509277	inter
CUST_1760_PI429285431	1.3879647	A	0.897718	A	1.40468505551706	0	lncRNA	1746-1_{1..672}	"transcript_id ""ENST00000515623.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515623.1"" | genecode_v17"	chr4	 45011557	 45012228	+	ENSG00000248744.1	ENST00000515623.1	RP11-362I1.1	RP11-362I1.1-001	NA	NA	NA	inter
CUST_37627_PI429285431	4.530528	P	4.817641	P	0.819540414103155	0	lncRNA	38724-1_{1..863}	n346105|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1655|NULL|-1.2727800|-0.2293434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346105|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1655|NULL|-1.2727800|-0.2293434	chr15	 72115006	 72115868	+	NA	NA	NA	NA	MYO9A	NA	chr15:72118351-72125947	inter
CUST_28386_PI429285431	6.243046	P	6.644058	P	0.757326858644568	0	lncRNA	30038-1_{1..817}	n325701|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045227|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045227|-1.1899000|-0.3489991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325701|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045227|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045227|-1.1899000|-0.3489991	chr13	 68694478	 68695294	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20438_PI429285431	1.5102568	A	2.7376328	A	0.427093545392297	0	lncRNA	22082-1_{1..550}	lnc-NKAIN3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKAIN3-1:2	chr8	 63926718	 63927267	+	lnc-NKAIN3-1	lnc-NKAIN3-1:2	ENSG00000240915.2	RP11-659E9.2	GGH	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-27.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-24.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40chr8:63927638-63937240"	NA	inter
CUST_44735_PI429285431	5.434341	P	5.341877	P	1.06618958913749	0	lncRNA	49288-1_{1..3000}	"gi|378548214|ref|NR_046379.1| Homo sapiens glutamate receptor, metabotropic 4 (GRM4), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378548214|ref|NR_046379.1| Homo sapiens glutamate receptor, metabotropic 4 (GRM4), transcript variant 8, non-coding RNA"	Chr6	 33989623	 33992622	-	2914	NR_046379.1	NA	NA	NA	NA	NA	inter
CUST_48537_PI429285431	1.445036	A	1.245065	A	1.14867526493535	0	lncRNA	52386-1_{1..1062}	hg19_lincRNAsTranscripts_TCONS_l2_00014767 range=chr2:108783601-108801133 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014767 range=chr2:108783601-108801133 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	108783601	108784662	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33783_PI429285431	4.845859	P	5.261882	P	0.749487852158522	0	lncRNA	35336-1_{1..1358}	n340571|BC034720|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3033|NULL|2.1639200|-0.2333044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340571|BC034720|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3033|NULL|2.1639200|-0.2333044	chr17	 26256564	 26257921	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34015_PI429285431	3.7742445	P	4.019265	P	0.843803806000135	0	lncRNA	35549-2_{3001..3341}	n340830|CR749847|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3294|NULL|1.1629600|-0.2764464	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340830|CR749847|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3294|NULL|1.1629600|-0.2764464	chr6	  6683541	  6683881	-	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00"	NA	inter
CUST_46388_PI429285431	1.4591087	A	1.7105769	A	0.840041088188878	0	lncRNA	50605-1_{1..1793}	"gi|381140028|ref|NR_046467.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 10, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|381140028|ref|NR_046467.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 10, non-coding RNA"	Chr14	101292445	101294237	+	55384	NR_046467.1	NA	NA	NA	NA	NA	inter
CUST_7688_PI429285431	0.8920677	A	0.88919556	A	1.00199279873254	0	lncRNA	9321-1_{1..549}	lnc-SART3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SART3-1:3	chr12	108867328	108867876	-	lnc-SART3-1	lnc-SART3-1:3	ENSG00000247213	RP11-13G14.4	NA	NA	NA	inter
CUST_43213_PI429285431	3.753676	P	3.8236322	P	0.952666920426373	0	lncRNA	48027-1_{1..813}	ENST00000596350 havana:sense_intronic chromosome:GRCh37:19:51058627:51061226:-1 gene:ENSG00000268231 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000596350 havana:sense_intronic chromosome:GRCh37:19:51058627:51061226:-1 gene:ENSG00000268231 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 51058627	 51059439	-	ENSG00000268231	ENST00000596350	NA	NA	LRRC4B	NA	chr19:51048627-51071226	inner
LNCA_21_P0006431	0.88868296	A	0.88969314	A	0.999300041666349	0	lncRNA	AK057519	NA	AK057519	NA	Hs.496647	XLOC_008051	NA	NA	THC2506907	NA	"BROAD Institute lincRNA (XLOC_008051), lincRNA [TCONS_00016936]"	chrX:117990886-117990945	hs|Xq24	Agilent_HUMAN_G3V2	AK057519	AK057519	chrX	117990886	117990945	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013896	3.543545	P	3.9592013	P	0.749678378998368	0	lncRNA	TCONS_l2_00030943	NA	NA	NA	NA	XLOC_l2_015950	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015950), lincRNA [TCONS_l2_00030943]"	chrY:21230665-21230606	hs|Yq11.222	Agilent_HUMAN_G3V2	TCONS_l2_00030943	TCONS_l2_00030943	chrY	 21230606	 21230665	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008106	0.88783	A	3.4518044	P	0.169109029621306	0	lncRNA	TCONS_00021875	NA	NA	NA	NA	XLOC_010474	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010474), lincRNA [TCONS_00021875]"	chr13:96057163-96057222	hs|13q32.1	Agilent_HUMAN_G3V2	TCONS_00021875	TCONS_00021875	chr13	 96057163	 96057222	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38431_PI429285431	5.3111067	P	2.8787374	A	5.39779168321485	0	lncRNA	39458-1_{1..1115}	n382553|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002afm.2||-1.1074800|-0.4660553	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382553|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002afm.2||-1.1074800|-0.4660553	chr15	 59152981	 59154095	+	NA	NA	NA	NA	FAM63B	NA	chr15:59142981-59149754	inter
CUST_6494_PI429285431	0.9249242	A	0.90573525	A	1.01338961526785	0	lncRNA	6436-1_{1..2197}	"transcript_id ""ENST00000588717.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588717.1"" | genecode_v17"	chr19	 37264614	 37266810	-	ENSG00000267353.1	ENST00000588717.1	CTD-2162K18.3	CTD-2162K18.3-001	ZNF850	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40chr19:37254614-37263716"	NA	inter
CUST_5674_PI429285431	1.2500477	A	1.0970957	A	1.11184216472915	0	lncRNA	5599-1_{1..767}	"transcript_id ""ENST00000599664.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599664.1"" | genecode_v17"	chr16	 86371855	 86372621	-	ENSG00000168367.5	ENST00000599664.1	RP11-158I3.2	RP11-158I3.2-006	NA	NA	NA	inter
CUST_25524_PI429285431	9.477835	P	9.2171	P	1.19808893135585	0	lncRNA	27055-1_{1..3000}	lnc-MRC2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRC2-1:3	chr17	 60812492	 60815491	+	lnc-MRC2-1	lnc-MRC2-1:3	ENSG00000265702.1	RP11-156L14.1	10-Mar	"hg19_refFlat_MARCH10:range=chr17:60779064-608790965'pad=0,hg19_refFlat_MARCH10:range=chr17:60779064-608790965'pad=0 3'pad=0 strand=- repeatMasking=none,-95.70chr17:60802492-60825276"	NA	inter
CUST_21232_PI429285431	0.90763724	A	0.92532474	A	0.987814807350983	0	lncRNA	22858-1_{1..462}	lnc-POP5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POP5-1:1	chr12	121079266	121079727	-	lnc-POP5-1	lnc-POP5-1:1	ENSG00000256008.1	RP11-728G15.1	CABP1	NA	chr12:121078422-121089394	inner
CUST_29284_PI429285431	0.9061357	A	0.9063	A	0.99988612240278	0	lncRNA	31035-1_{1..748}	n332395|AM990315|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500199|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500199|3.9539700|-0.2801765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332395|AM990315|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000500199|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000500199|3.9539700|-0.2801765	chr1	 67648590	 67649337	+	NA	NA	NA	NA	IL23R	NA	chr1:67638590-67725662	inner
CUST_12761_PI429285431	0.9084733	A	0.924794	A	0.988751100193128	0	lncRNA	14384-1_{1..450}	lnc-LYZL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYZL1-1:1	chr10	 29657169	 29657618	+	lnc-LYZL1-1	lnc-LYZL1-1:1	XLOC_008430	linc-MAP3K8-6	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90"	NA	inter
LNCA_21_P0002471	0.90203726	A	1.4916273	A	0.664531715292919	0	lncRNA	TCONS_00004327	NA	NA	NA	NA	XLOC_002198	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002198), lincRNA [TCONS_00004327]"	chr2:88986266-88986207	hs|2p11.2	Agilent_HUMAN_G3V2	TCONS_00004327	TCONS_00004327	chr2	 88986207	 88986266	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46795_PI429285431	8.269964	P	8.442817	P	0.887086688148001	0	lncRNA	50940-1_{1..2506}	"gi|291621695|ref|NR_033420.1| Homo sapiens SH3-domain GRB2-like 1 pseudogene 2 (SH3GL1P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|291621695|ref|NR_033420.1| Homo sapiens SH3-domain GRB2-like 1 pseudogene 2 (SH3GL1P2), non-coding RNA"	Chr17	 28951336	 28953841	+	6459	NR_033420.1	NA	NA	NA	NA	NA	inter
CUST_49945_PI429285431	5.2384787	P	4.9626284	P	1.21070744942377	0	lncRNA	53695-1_{1..343}	hg19_lincRNAsTranscripts_TCONS_l2_00026196 range=chr7:128214600-128218959 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026196 range=chr7:128214600-128218959 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	128214600	128214942	+	NA	NA	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40"	NA	inter
CUST_26446_PI429285431	0.9077828	A	1.1353759	A	0.854058560457785	0	lncRNA	27954-1_{1..439}	lnc-SH3RF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SH3RF2-1:1	chr5	145499880	145500318	+	lnc-SH3RF2-1	lnc-SH3RF2-1:1	ENSG00000251556.1	RP11-118M9.3	LARS	"hg19_refFlat_LARS:range=chr5:145493669-1455620565'pad=0,hg19_refFlat_LARS:range=chr5:145493669-1455620565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30chr5:145492589-145509975"	NA	inner
CUST_29103_PI429285431	1.883298	A	1.8089541	A	1.05288210379627	0	lncRNA	30836-1_{1..1211}	n326601|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023040|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023040|-1.0558500|-0.3290201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326601|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023040|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023040|-1.0558500|-0.3290201	chr1	 59121127	 59122337	-	NA	NA	NA	NA	MYSM1	NA	chr1:59120411-59144925	inner
LNCA_21_P0006512	0.9077322	A	1.1123965	A	0.867740577790804	0	lncRNA	TCONS_00017234	NA	NA	NA	NA	XLOC_008054	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008054), lincRNA [TCONS_00017234]"	chrX:118707059-118707118	hs|Xq24	Agilent_HUMAN_G3V2	TCONS_00017234	TCONS_00017234	chrX	118707059	118707118	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51349_PI429285431	1.0738497	A	0.9248545	A	1.10879695451141	0	lncRNA	54947-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008762 range=chr15:78996146-79029199 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008762 range=chr15:78996146-79029199 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 78996146	 78999145	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60"	NA	inter
CUST_47159_PI429285431	15.148518	P	14.974897	P	1.12788579979711	0	lncRNA	51237-1_{1..1186}	"gi|395393978|ref|NR_073024.1| Homo sapiens ribosomal protein L13a (RPL13A), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|395393978|ref|NR_073024.1| Homo sapiens ribosomal protein L13a (RPL13A), transcript variant 3, non-coding RNA"	Chr19	 49990811	 49991996	+	23521	NR_073024.1	NA	NA	NA	NA	NA	inter
CUST_34441_PI429285431	2.0477862	A	3.1459801	P	0.467100890284547	0	lncRNA	35919-2_{3001..3401}	n341316|U25433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3785|NULL|0.2981830|-0.3760724	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341316|U25433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3785|NULL|0.2981830|-0.3760724	chr7	129549219	129549619	+	NA	NA	NA	NA	UBE2H	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr7:129536219-129559153"	NA	inner
CUST_48127_PI429285431	0.90163255	A	0.91404194	A	0.991435353661581	0	lncRNA	51995-2_{3001..3339}	"gi|397137277|ref|XR_159201.1| PREDICTED: Homo sapiens uncharacterized LOC100506255 (LOC100506255), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397137277|ref|XR_159201.1| PREDICTED: Homo sapiens uncharacterized LOC100506255 (LOC100506255), misc_RNA"	NA	NA	NA	NA	NA	XR_159201.1	NA	NA	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RPS10-NUDT3:range=chr6:34256530-343929985'pad=0,hg19_refFlat_RPS10-NUDT3:range=chr6:34256530-343929985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RPS10:range=chr6:34385283-343929985'pad=0,hg19_refFlat_RPS10:range=chr6:34385283-343929985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10"	NA	Unknown
LNCA_32_P154223	1.2035941	A	2.5704775	A	0.387727938451902	0	lncRNA	XR_109654	XR_109654	XR_109654	100505683	NA	LOC100505683	uncharacterized LOC100505683	ENST00000442440	THC2670565	NA	"PREDICTED: Homo sapiens hypothetical LOC100505683 (LOC100505683), miscRNA [XR_109654]"	chr20:23337335-23337276	hs|20p11.21	Agilent_HUMAN_G3V2	XR_109654	XR_109654	chr20	 23337276	 23337335	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5277_PI429285431	1.0423788	A	1.1745837	A	0.912435889851003	0	lncRNA	5217-1_{1..1212}	"transcript_id ""ENST00000559866.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559866.1"" | genecode_v17"	chr15	 84977316	 84978527	+	ENSG00000259774.1	ENST00000559866.1	RP11-182J1.13	RP11-182J1.13-001	NA	NA	NA	inter
CUST_48657_PI429285431	7.739376	P	7.2735877	P	1.38107177582643	0	lncRNA	52503-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00013803 range=chr2:96192905-96199699 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013803 range=chr2:96192905-96199699 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 96192905	 96195904	+	NA	NA	NA	NA	TRIM43	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr2:96191094-96209699"	NA	inter
CUST_28027_PI429285431	2.8294578	P	3.2622347	P	0.740834453633988	0	lncRNA	29642-1_{1..572}	n325289|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327305|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327305|-0.9034280|-0.4731511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325289|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327305|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327305|-0.9034280|-0.4731511	chr2	 64566990	 64567561	+	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10"	NA	inter
CUST_12600_PI429285431	3.0970151	A	4.0123367	P	0.530225661654993	0	lncRNA	14213-1_{1..332}	lnc-TK2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TK2-6:1	chr16	 65904891	 65905222	-	lnc-TK2-6	lnc-TK2-6:1	XLOC_011978	linc-CDH11-4	NA	NA	NA	inter
CUST_41180_PI429285431	1.7386576	A	2.5289724	A	0.578217909458672	0	lncRNA	42017-1_{1..73}	ENST00000362105 ncrna:miRNA chromosome:GRCh37:11:122017229:122017301:-1 gene:ENSG00000198975 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362105 ncrna:miRNA chromosome:GRCh37:11:122017229:122017301:-1 gene:ENSG00000198975 gene_biotype:miRNA transcript_biotype:miRNA	chr11	122017229	122017301	-	ENSG00000198975	ENST00000362105	NA	NA	NA	NA	NA	inter
CUST_40944_PI429285431	11.028252	P	11.247188	P	0.8591988693833	0	lncRNA	41623-2_{3001..3384}	n410903|NR_038365|lncRNA|Homosapiens||RefGeneNoncode|NR_038365||3.3603700|-0.1630596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410903|NR_038365|lncRNA|Homosapiens||RefGeneNoncode|NR_038365||3.3603700|-0.1630596	chr10	133607733	133608116	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47928_PI429285431	0.88951886	A	1.3648443	A	0.719304512560264	0	lncRNA	51819-1_{1..1054}	"gi|410172225|ref|XR_171672.1| PREDICTED: Homo sapiens uncharacterized LOC101060276 (LOC101060276), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172225|ref|XR_171672.1| PREDICTED: Homo sapiens uncharacterized LOC101060276 (LOC101060276), misc_RNA"	NA	NA	NA	NA	NA	XR_171672.1	NA	NA	NA	"hg19_refFlat_SPDYE5:range=chr7:75124435-751312615'pad=0,hg19_refFlat_SPDYE5:range=chr7:75124435-751312615'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SPDYE6:range=chr7:101988542-1019964685'pad=0,hg19_refFlat_SPDYE6:range=chr7:101988542-1019964685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SPDYE2:range=chr7:102292796-1023007125'pad=0,hg19_refFlat_SPDYE2:range=chr7:102292796-1023007125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_SPDYE2L:range=chr7:102292796-1023007125'pad=0,hg19_refFlat_SPDYE2L:range=chr7:102292796-1023007125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_SPDYE1:range=chr7:44040625-440473675'pad=0,hg19_refFlat_SPDYE1:range=chr7:44040625-440473675'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SPDYE3:range=chr7:99905509-999176135'pad=0,hg19_refFlat_SPDYE3:range=chr7:99905509-999176135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SPDYE2:range=chr7:102193703-1022016225'pad=0,hg19_refFlat_SPDYE2:range=chr7:102193703-1022016225'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.41;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SPDYE4:range=chr17:8656456-86617005'pad=0,hg19_refFlat_SPDYE4:range=chr17:8656456-86617005'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_SPDYE2L:range=chr7:102193703-1022016225'pad=0,hg19_refFlat_SPDYE2L:range=chr7:102193703-1022016225'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30"	NA	Unknown
LNCA_21_P0012062	3.9619215	P	4.2097955	P	0.84213649968883	0	lncRNA	ENST00000414796	NA	NA	NA	NA	XLOC_l2_007964	NA	ENST00000414796	THC2701671	NA	"BROAD Institute lincRNA (XLOC_l2_007964), lincRNA [TCONS_l2_00015761]"	chr2:35223450-35223391	hs|2p22.3	Agilent_HUMAN_G3V2	ENST00000414796	ENST00000414796	chr2	 35223391	 35223450	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38352_PI429285431	3.4847043	P	3.6023936	P	0.921662654860158	0	lncRNA	39395-1_{1..2141}	n382105|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vrz.1||-0.8672020|-0.2977917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382105|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vrz.1||-0.8672020|-0.2977917	chr13	111936127	111938267	+	NA	NA	NA	NA	ARHGEF7	NA	chr13:111926127-111948268	inner
CUST_38433_PI429285431	0.8865441	A	0.8884735	A	0.998663535694748	0	lncRNA	39460-1_{1..1267}	n382632|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002avl.1||4.4352200|-0.3268194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382632|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002avl.1||4.4352200|-0.3268194	chr15	 73191424	 73192690	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27567_PI429285431	0.8932247	A	1.9803132	A	0.470710356352198	0	lncRNA	29145-1_{1..355}	n324766|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206876|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206876|-0.8158280|-0.1123456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324766|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206876|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206876|-0.8158280|-0.1123456	chr21	 46300857	 46301211	+	NA	NA	NA	NA	ITGB2	NA	chr21:46305868-46311909	inter
CUST_16651_PI429285431	2.5392604	A	2.6287537	A	0.939852784164568	0	lncRNA	18353-1_{1..505}	lnc-C7orf53-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C7orf53-2:4	chr7	112260463	112260967	+	lnc-C7orf53-2	lnc-C7orf53-2:4	XLOC_006210	linc-FOXP2-5	NA	NA	NA	inter
CUST_11334_PI429285431	0.8819443	A	0.8831843	A	0.99914086676258	0	lncRNA	12897-1_{1..225}	lnc-PSMG1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PSMG1-3:1	chr21	 40454653	 40454877	-	lnc-PSMG1-3	lnc-PSMG1-3:1	XLOC_014082	linc-ERG-9	NA	NA	NA	inter
LNCA_21_P0003795	0.88854027	A	0.8946298	A	0.995787955098727	0	lncRNA	ENST00000508977	NA	NA	NA	NA	XLOC_004160	NA	ENST00000508977	NA	NA	"BROAD Institute lincRNA (XLOC_004160), lincRNA [TCONS_00008644]"	chr4:172559870-172559811	hs|4q34.1	Agilent_HUMAN_G3V2	ENST00000508977	ENST00000508977	chr4	172559811	172559870	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27596_PI429285431	5.645468	P	6.1606436	P	0.699707761533174	0	lncRNA	29175-1_{1..348}	n324799|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194629|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194629|-1.2717200|-0.3794266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324799|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194629|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194629|-1.2717200|-0.3794266	chr21	 36377026	 36377373	+	NA	NA	NA	NA	RUNX1	NA	chr21:36367026-36394582	inner
CUST_753_PI429285431	4.009609	P	4.2285843	P	0.859175464537021	0	lncRNA	744-1_{1..626}	"transcript_id ""ENST00000454489.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454489.1"" | genecode_v17"	chr2	 11528149	 11528774	-	ENSG00000231403.1	ENST00000454489.1	AC099344.3	AC099344.3-001	NA	NA	NA	inter
CUST_11553_PI429285431	0.88537025	A	1.7997701	A	0.530564535534532	0	lncRNA	13126-1_{1..589}	lnc-CD1B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD1B-2:1	chr1	158110288	158110876	-	lnc-CD1B-2	lnc-CD1B-2:1	XLOC_001054	linc-CD5L-1	NA	NA	NA	inter
LNCA_21_P0001681	0.88563067	A	1.9061263	A	0.492946973913876	0	lncRNA	TCONS_00002040	NA	NA	NA	NA	XLOC_000213	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000213), lincRNA [TCONS_00002040]"	chr1:56701398-56701457	hs|1p32.2	Agilent_HUMAN_G3V2	TCONS_00002040	TCONS_00002040	chr1	 56701398	 56701457	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30817_PI429285431	1.1138828	A	1.2331488	A	0.920655933638058	0	lncRNA	32604-1_{1..301}	n336744|Z75939|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328106|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328106|-1.3373000|-0.3550859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336744|Z75939|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328106|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328106|-1.3373000|-0.3550859	chr14	 22466206	 22466506	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33241_PI429285431	0.9194039	A	0.881955	A	1.02629743197538	0	lncRNA	34828-1_{1..248}	n339943|U55055|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2392|NULL|-1.1628800|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339943|U55055|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2392|NULL|-1.1628800|-1.0000000	chr10	  4284538	  4284785	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12742_PI429285431	0.88014096	A	0.8803008	A	0.999889213491938	0	lncRNA	14367-1_{1..707}	lnc-ARL4C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARL4C-2:1	chr2	235821905	235822611	-	lnc-ARL4C-2	lnc-ARL4C-2:1	XLOC_002523	linc-ARL4C-1	NA	NA	NA	inter
CUST_24151_PI429285431	4.2229185	P	4.309294	P	0.941886090932506	0	lncRNA	25703-1_{1..959}	lnc-BLID-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BLID-2:2	chr11	122238204	122239162	-	lnc-BLID-2	lnc-BLID-2:2	ENSG00000255090.1	RP11-820L6.1	NA	NA	NA	inter
LNCA_21_P0009935	0.8832381	A	0.88398457	A	0.999482720259448	0	lncRNA	TCONS_00028501	NA	NA	NA	NA	XLOC_013463	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013463), lincRNA [TCONS_00028501]"	chr20:10981638-10981697	hs|20p12.2	Agilent_HUMAN_G3V2	TCONS_00028501	TCONS_00028501	chr20	 10981638	 10981697	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49145_PI429285431	13.433976	P	13.957068	P	0.695878818628021	0	lncRNA	52971-2_{3001..3203}	hg19_lincRNAsTranscripts_TCONS_l2_00021264 range=chr4:120328645-120334655 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021264 range=chr4:120328645-120334655 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	120331645	120331847	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41338_PI429285431	0.892496	A	1.0371702	A	0.90458363422311	0	lncRNA	42400-1_{1..75}	ENST00000362150 ncrna:miRNA chromosome:GRCh37:14:101512257:101512331:1 gene:ENSG00000199020 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362150 ncrna:miRNA chromosome:GRCh37:14:101512257:101512331:1 gene:ENSG00000199020 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101512257	101512331	+	ENSG00000199020	ENST00000362150	NA	NA	NA	NA	NA	inter
CUST_32344_PI429285431	4.4267445	P	3.5818315	P	1.79615642743547	0	lncRNA	34024-1_{1..553}	n338924|AF086128|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1350|NULL|-1.0606900|-0.3012410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338924|AF086128|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1350|NULL|-1.0606900|-0.3012410	chr2	102042037	102042589	-	NA	NA	NA	NA	RFX8	NA	chr2:102032037-102052579	inner
CUST_5042_PI429285431	0.90690815	A	1.3945192	A	0.713205112575249	0	lncRNA	4983-1_{1..985}	"transcript_id ""ENST00000553575.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553575.1"" | genecode_v17"	chr14	102018560	102019544	-	ENSG00000258498.1	ENST00000553575.1	DIO3OS	DIO3OS-013	DIO3	NA	chr14:102027688-102029789	inter
CUST_51697_PI429285431	2.7122612	A	2.197551	A	1.42870712072494	0	lncRNA	55257-2_{3001..4851}	hg19_lincRNAsTranscripts_TCONS_l2_00011031 range=chr17:81058857-81063833 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011031 range=chr17:81058857-81063833 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 81061857	 81063707	+	NA	NA	NA	NA	METRNL	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40chr17:81048857-81052592"	NA	inter
CUST_19116_PI429285431	1.9944339	A	1.4135444	A	1.49577118872601	0	lncRNA	20798-2_{3001..6000}	lnc-PDZD8-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-PDZD8-3:1	NA	     3000	     5999	NA	NA	NA	NA	NA	NA	"hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-20.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30"	NA	Unknown
CUST_14349_PI429285431	8.282576	P	8.807941	P	0.694783308394996	0	lncRNA	16007-1_{1..697}	lnc-JPH3-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JPH3-3:6	chr16	 87552391	 87553087	+	lnc-JPH3-3	lnc-JPH3-3:6	XLOC_011821	linc-JPH3-2	NA	NA	NA	inter
LNCA_21_P0006730	4.0504804	P	5.126046	P	0.474485004985869	0	lncRNA	ENST00000478294	NA	NA	NA	NA	XLOC_008711	NA	ENST00000478294	NA	NA	"BROAD Institute lincRNA (XLOC_008711), lincRNA [TCONS_00017912]"	chr10:5637016-5636957	hs|10p15.1	Agilent_HUMAN_G3V2	ENST00000478294	ENST00000478294	chr10	  5636957	  5637016	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50883_PI429285431	7.7369947	P	7.9774375	P	0.846485464452596	0	lncRNA	54526-1_{1..385}	hg19_lincRNAsTranscripts_TCONS_l2_00006100 range=chr12:8385031-8393299 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006100 range=chr12:8385031-8393299 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  8385031	  8385415	-	NA	NA	NA	NA	FAM90A1	NA	chr12:8375031-8380214	inter
CUST_42256_PI429285431	7.681261	P	7.53887	P	1.10373283378687	0	lncRNA	44550-1_{1..134}	ENST00000516864 ncrna:rRNA chromosome:GRCh37:16:34988926:34989059:1 gene:ENSG00000252673 gene_biotype:rRNA transcript_biotype:rRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516864 ncrna:rRNA chromosome:GRCh37:16:34988926:34989059:1 gene:ENSG00000252673 gene_biotype:rRNA transcript_biotype:rRNA	chr16	 34988926	 34989059	+	ENSG00000252673	ENST00000516864	NA	NA	NA	NA	NA	inter
CUST_27661_PI429285431	0.8927429	A	0.89840937	A	0.996080005611668	0	lncRNA	29239-1_{1..977}	n324868|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171049|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171049|-1.0725700|-0.5066663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324868|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171049|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171049|-1.0725700|-0.5066663	chr21	 22794794	 22795770	-	NA	NA	NA	NA	NCAM2	NA	chr21:22784794-22824248	inner
CUST_29693_PI429285431	7.00261	P	6.9745555	P	1.01963620057935	0	lncRNA	31455-1_{1..242}	n333355|AY273894|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085681|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085681|-1.1145000|-0.0992528	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333355|AY273894|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085681|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085681|-1.1145000|-0.0992528	chr7	127292234	127292475	+	NA	NA	NA	NA	SND1	NA	chr7:127292202-127302476	inner
CUST_44020_PI429285431	7.017445	P	5.123649	P	3.71611719335523	0	lncRNA	48705-2_{3001..4422}	"gi|371118729|ref|NR_045769.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|371118729|ref|NR_045769.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 8, non-coding RNA"	Chr2	175939978	175941399	-	1386	NR_045769.1	NA	NA	NA	NA	NA	inter
CUST_31229_PI429285431	4.340281	P	5.0555468	P	0.609092903124112	0	lncRNA	33020-1_{1..3000}	n337678|BX641061|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|60|NULL|-0.4250080|-0.3446239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337678|BX641061|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|60|NULL|-0.4250080|-0.3446239	chr15	 29665805	 29668804	-	NA	NA	NA	NA	FAM189A1	NA	chr15:29655805-29679160	inner
CUST_34074_PI429285431	0.89189744	A	1.0885096	A	0.872597254739122	0	lncRNA	35603-1_{1..1865}	n340897|AK123489|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3362|NULL|-0.9506630|-0.2695357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340897|AK123489|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3362|NULL|-0.9506630|-0.2695357	chr6	 26086518	 26088382	-	NA	NA	NA	NA	HFE	"hg19_refFlat_HFE:range=chr6:26087669-260944545'pad=0,hg19_refFlat_HFE:range=chr6:26087669-260944545'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.50chr6:26087509-26095469"	NA	inner
CUST_2295_PI429285431	4.293478	P	4.471859	P	0.883694126280108	0	lncRNA	2287-1_{1..325}	"transcript_id ""ENST00000522838.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522838.1"" | genecode_v17"	chr5	104098932	104099256	-	ENSG00000251574.2	ENST00000522838.1	RP11-6N13.1	RP11-6N13.1-003	NA	NA	NA	inter
CUST_41148_PI429285431	4.333714	P	4.4684644	P	0.910827401787588	0	lncRNA	41947-1_{1..96}	ENST00000384905 ncrna:miRNA chromosome:GRCh37:7:158325410:158325505:-1 gene:ENSG00000207637 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384905 ncrna:miRNA chromosome:GRCh37:7:158325410:158325505:-1 gene:ENSG00000207637 gene_biotype:miRNA transcript_biotype:miRNA	chr7	158325410	158325505	-	ENSG00000207637	ENST00000384905	NA	NA	PTPRN2	NA	chr7:158315410-158335505	inner
CUST_50125_PI429285431	1.0156499	A	0.9183192	A	1.06979228160476	0	lncRNA	53853-1_{1..780}	hg19_lincRNAsTranscripts_TCONS_l2_00029479 range=chr9:98150704-98189098 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029479 range=chr9:98150704-98189098 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 98150704	 98151483	-	NA	NA	NA	NA	PTCH1	NA	chr9:98175399-98199098	inter
CUST_14357_PI429285431	1.6850986	A	2.5361953	A	0.554363163072244	0	lncRNA	16015-1_{1..500}	lnc-DHFR-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHFR-2:5	chr5	 80245580	 80246079	-	lnc-DHFR-2	lnc-DHFR-2:5	XLOC_004907	linc-MTRNR2L2-1	NA	NA	NA	inter
CUST_33034_PI429285431	0.8819386	A	0.882304	A	0.999746756091877	0	lncRNA	34648-1_{1..1480}	n339721|AF244571|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2166|NULL|-1.0899900|-0.3979875	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339721|AF244571|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2166|NULL|-1.0899900|-0.3979875	chr3	184672288	184673767	+	NA	NA	NA	NA	VPS8	NA	chr3:184662288-184683767	inner
CUST_208_PI429201921	3.1787856	P	3.1823838	A	0.997509025453776	0	lncRNA	165-2_{3001..5414}	TC19002497.hg.1	 TCONS_l2_00013125-XLOC_l2_007060 // Broad TUCP // linc-PSG9-1 chr19:-:43787823-43788569 // chr19 // 100 // 100 // 0 // --- // 0///TCONS_l2_00013124-XLOC_l2_007060 // Broad TUCP // linc-PSG9-1 chr19:-:43783154-43788569 // chr19 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr19:-:43783154-43788569	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00013124-XLOC_l2_007060	linc-PSG9-1	chr19	 43783154	 43788569	-	NA	NA	NA	NA	PLA2G2C	NA	chr1:20490484-20497061	Unknown
CUST_22276_PI429285431	1.5447586	A	0.8829511	A	1.58206349223846	0	lncRNA	23877-1_{1..3000}	lnc-ZNF720-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZNF720-2:1	chr16	 31923175	 31926174	+	lnc-ZNF720-2	lnc-ZNF720-2:1	ENSG00000262657.1	RP11-170L3.8	ZNF267	NA	chr16:31913175-31928627	inner
LNCA_21_P0013357	0.8893319	A	0.89027095	A	0.999349311929455	0	lncRNA	TCONS_l2_00026976	NA	NA	NA	NA	XLOC_l2_014055	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014055), lincRNA [TCONS_l2_00026976]"	chr7:150245943-150245884	hs|7q36.1	Agilent_HUMAN_G3V2	TCONS_l2_00026976	TCONS_l2_00026976	chr7	150245884	150245943	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15075_PI429285431	3.8260486	P	4.533345	P	0.612466822436976	0	lncRNA	16739-1_{1..801}	lnc-RTEL1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RTEL1.1-1:1	chr20	 62259543	 62260343	+	lnc-RTEL1.1-1	lnc-RTEL1.1-1:1	XLOC_013615	linc-RTEL1	GMEB2	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70chr20:62249543-62258381"	NA	inter
CUST_15481_PI429285431	2.861144	A	3.5820968	P	0.606696628818379	0	lncRNA	17169-1_{1..568}	lnc-ATP1B1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP1B1-1:1	chr1	169073948	169074515	+	lnc-ATP1B1-1	lnc-ATP1B1-1:1	XLOC_000457	linc-ATP1B1-1	ATP1B1	NA	chr1:169075947-169084145	inter
CUST_37573_PI429285431	5.110698	P	5.2952886	P	0.879898733281697	0	lncRNA	38675-2_{3001..4372}	n346049|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1599|NULL|-1.4031100|-0.2732249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346049|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1599|NULL|-1.4031100|-0.2732249	chr14	 38665412	 38666783	+	NA	NA	NA	NA	SSTR1	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-29.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60chr14:38677204-38682268"	NA	inter
CUST_45198_PI429285431	0.910111	A	1.8147779	A	0.53415601964233	0	lncRNA	49664-1_{1..2999}	"gi|336455051|ref|NR_038874.1| Homo sapiens uncharacterized LOC286177 (LOC286177), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|336455051|ref|NR_038874.1| Homo sapiens uncharacterized LOC286177 (LOC286177), non-coding RNA"	Chr8	 58173785	 58176783	+	286177	NR_038874.1	NA	NA	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30"	NA	inter
CUST_25680_PI429285431	1.2052711	A	1.2949507	A	0.939731425690363	0	lncRNA	27209-1_{1..628}	lnc-IGSF10-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IGSF10-2:2	chr3	151645645	151646272	-	lnc-IGSF10-2	lnc-IGSF10-2:2	ENSG00000242908.2	RP11-454C18.2	NA	NA	NA	inter
CUST_32254_PI429285431	0.8921245	A	0.9024957	A	0.992837009347732	0	lncRNA	33945-1_{1..3000}	n338829|BC042523|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1252|NULL|-1.2584100|-0.2994016	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338829|BC042523|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1252|NULL|-1.2584100|-0.2994016	chr2	 48340113	 48343112	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11314_PI429285431	5.8332767	P	5.868975	P	0.97555945163313	0	lncRNA	12877-1_{1..303}	lnc-TSPYL5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSPYL5-2:1	chr8	 98630661	 98630963	-	lnc-TSPYL5-2	lnc-TSPYL5-2:1	XLOC_007167	linc-TSPYL5	MTDH	NA	chr8:98636394-98640871	inter
CUST_40245_PI429285431	6.5889606	P	5.23798	P	2.55085448164518	0	lncRNA	41062-1_{1..3000}	n408153|NR_028132|lncRNA|Homosapiens||RefGeneNoncode|NR_028132||2.6412800|-0.4455992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408153|NR_028132|lncRNA|Homosapiens||RefGeneNoncode|NR_028132||2.6412800|-0.4455992	chr14	 35179587	 35182586	-	NA	NA	NA	NA	CFL2	NA	chr14:35169587-35184029	inter
CUST_24736_PI429285431	6.781477	P	6.8909473	P	0.926928330482895	0	lncRNA	26281-1_{1..1197}	lnc-C17orf69-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf69-1:2	chr17	 43718834	 43720030	+	lnc-C17orf69-1	lnc-C17orf69-1:2	ENSG00000167159.5	C17orf69	CRHR1	NA	chr17:43708834-43729667	inner
CUST_4725_PI429285431	2.7433367	A	3.1925948	P	0.732419394811606	0	lncRNA	4670-1_{1..649}	"transcript_id ""ENST00000546382.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546382.1"" | genecode_v17"	chr14	 19872436	 19873084	-	ENSG00000244306.5	ENST00000546382.1	CTD-2314B22.3	CTD-2314B22.3-008	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_38412_PI429285431	3.7778528	P	3.5343707	P	1.183846557233	0	lncRNA	39442-1_{1..615}	n382375|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yyy.1||1.6512400|-0.1528725	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382375|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yyy.1||1.6512400|-0.1528725	chr15	 25426956	 25427570	+	NA	NA	NA	NA	SNRPN	NA	chr15:25416956-25440721	inter
LNCA_19_P00320875	4.8496494	P	4.816985	P	1.02289949497788	0	lncRNA	ENST00000435485	NA	NA	NA	NA	XLOC_l2_014959	NA	ENST00000435485	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014959), lincRNA [TCONS_l2_00029827]"	chr9:109262663-109262722	hs|9q31.2	Agilent_HUMAN_G3V2	ENST00000435485	ENST00000435485	chr9	109262663	109262722	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37912_PI429285431	4.841886	P	4.778902	P	1.04462417754713	0	lncRNA	39001-1_{1..236}	n346452|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2002|NULL|-1.3050700|-0.0073051	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346452|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2002|NULL|-1.3050700|-0.0073051	chr14	 70040169	 70040404	-	NA	NA	NA	NA	NA	NA	NA	inner
CUST_33260_PI429285431	4.106928	P	3.058931	A	2.06765717291924	0	lncRNA	34846-1_{1..1683}	n339968|AK098597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2421|NULL|-1.2198800|-0.3710022	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339968|AK098597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2421|NULL|-1.2198800|-0.3710022	chr4	 42097863	 42099545	+	NA	NA	NA	NA	SLC30A9	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-26.90;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-22.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50chr4:42087863-42089551"	NA	inter
LNCA_33_P3423450	3.1400619	P	3.8793015	P	0.599055012510723	0	lncRNA	XR_110579	XR_110579	XR_110579	100130548	NA	LOC100130548	uncharacterized LOC100130548	NA	THC2620351	NA	"PREDICTED: Homo sapiens hypothetical LOC100130548 (LOC100130548), miscRNA [XR_110579]"	chr9:136924178-136924237	hs|9q34.2	Agilent_HUMAN_G3V2	XR_110579	XR_110579	chr9	136924178	136924237	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49912_PI429285431	6.2356596	P	6.18556	P	1.03533639836848	0	lncRNA	53661-1_{1..453}	hg19_lincRNAsTranscripts_TCONS_l2_00026769 range=chr7:97566296-97601646 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026769 range=chr7:97566296-97601646 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 97566296	 97566748	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48293_PI429285431	8.092121	P	7.652198	P	1.35653192424207	0	lncRNA	52151-1_{1..2399}	hg19_lincRNAsTranscripts_TCONS_l2_00000118 range=chr1:16972113-16976190 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000118 range=chr1:16972113-16976190 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16972113	 16974511	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48612_PI429285431	1.5588026	A	2.801226	A	0.422662083244046	0	lncRNA	52459-1_{1..245}	hg19_lincRNAsTranscripts_TCONS_l2_00013679 range=chr2:64478430-64479573 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013679 range=chr2:64478430-64479573 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 64478430	 64478674	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46484_PI429285431	7.023149	P	5.9749722	P	2.06791487667245	0	lncRNA	50680-1_{1..2731}	"gi|371933010|ref|NR_045105.2| Homo sapiens von Willebrand factor A domain containing 9 (VWA9), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|371933010|ref|NR_045105.2| Homo sapiens von Willebrand factor A domain containing 9 (VWA9), transcript variant 3, non-coding RNA"	Chr15	 65871095	 65873825	-	81556	NR_045105.2	NA	NA	NA	NA	NA	inter
CUST_21770_PI429285431	6.8629775	P	7.171741	P	0.807333409264965	0	lncRNA	23380-1_{1..109}	lnc-WDR82-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR82-1:3	chr3	 52332873	 52332981	-	lnc-WDR82-1	lnc-WDR82-1:3	ENSG00000242797.1	GLYCTK-AS1	GLYCTK	NA	chr3:52322873-52329272	inter
CUST_33549_PI429285431	0.9059483	A	1.5425595	A	0.64322206389082	0	lncRNA	35117-1_{1..1339}	n340298|BC016998|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2759|NULL|-0.9707520|-0.3086488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340298|BC016998|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2759|NULL|-0.9707520|-0.3086488	chr4	187543068	187544406	-	NA	NA	NA	NA	FAT1	NA	chr4:187533068-187554347	inner
CUST_4516_PI429285431	1.4067432	A	1.1253276	A	1.21538686036518	0	lncRNA	4465-1_{1..3000}	"transcript_id ""ENST00000567788.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000567788.1"" | genecode_v17"	chr12	130517999	130520998	-	ENSG00000214039.4	ENST00000567788.1	RP11-474D1.3	RP11-474D1.3-001	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
CUST_47713_PI429285431	1.3230689	A	2.0795836	A	0.591924591545799	0	lncRNA	51676-2_{3001..5821}	"gi|385137072|ref|NR_047610.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 40, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137072|ref|NR_047610.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 40, non-coding RNA"	ChrY	 15363259	 15366079	-	7404	NR_047610.1	NA	NA	NA	NA	NA	inter
CUST_16391_PI429285431	5.3730927	P	4.6862063	P	1.6098055117191	0	lncRNA	18087-2_{3001..6000}	lnc-PREX1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PREX1-3:1	chr20	 47104365	 47107364	-	lnc-PREX1-3	lnc-PREX1-3:1	XLOC_013778	linc-SULF2-9	NA	NA	NA	inter
LNCA_21_P0002351	2.0842774	A	2.317198	A	0.85091055883451	0	lncRNA	TCONS_00004023	NA	NA	NA	NA	XLOC_001861	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001861), lincRNA [TCONS_00004023]"	chr2:217668077-217668136	hs|2q35	Agilent_HUMAN_G3V2	TCONS_00004023	TCONS_00004023	chr2	217668077	217668136	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29560_PI429285431	3.9899683	P	4.534211	P	0.685751272834849	0	lncRNA	31320-1_{1..635}	n333052|AF234892|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000074717|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000074717|3.5250300|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333052|AF234892|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000074717|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000074717|3.5250300|-1.0000000	chr19	 54466370	 54467004	+	NA	NA	NA	NA	CACNG8	NA	chr19:54466290-54493469	inner
CUST_27627_PI429285431	0.8917944	A	1.2582527	A	0.775684403969449	0	lncRNA	29205-2_{3001..4486}	n324831|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171679|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171679|-1.0515400|-0.3373445	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324831|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171679|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171679|-1.0515400|-0.3373445	chr21	 28413283	 28414768	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013004	0.8993198	A	1.1501787	A	0.840395941514758	0	lncRNA	ENST00000507627	NA	NA	NA	NA	XLOC_l2_012175	NA	ENST00000507627	THC2725883	NA	"BROAD Institute lincRNA (XLOC_l2_012175), lincRNA [TCONS_l2_00023859]"	chr5:110306723-110306664	hs|5q22.1	Agilent_HUMAN_G3V2	ENST00000507627	ENST00000507627	chr5	110306664	110306723	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20347_PI429285431	1.2446902	A	0.91088384	A	1.26033421688565	0	lncRNA	21989-1_{1..548}	lnc-EXTL3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EXTL3-2:1	chr8	 28656939	 28657486	+	lnc-EXTL3-2	lnc-EXTL3-2:1	ENSG00000254034.1	RP11-662B19.2	INTS9	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60chr8:28646939-28666986"	NA	inner
CUST_10118_PI429285431	8.513964	P	8.954526	P	0.736847514727785	0	lncRNA	11643-1_{1..764}	lnc-OBFC2A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OBFC2A-3:1	chr2	192684687	192685450	+	lnc-OBFC2A-3	lnc-OBFC2A-3:1	XLOC_001789	linc-SLC39A10-9	NA	NA	NA	inter
CUST_38068_PI429285431	5.828264	P	5.243756	P	1.49952752058775	0	lncRNA	39146-1_{1..3000}	n381039|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001aia.1||1.1647500|-0.2131817	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381039|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001aia.1||1.1647500|-0.2131817	chr1	  1658824	  1661823	-	NA	NA	NA	NA	NADK	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00chr1:1667250-1672665"	NA	inner
CUST_31452_PI429285431	0.8977097	A	0.9116173	A	0.990406302255596	0	lncRNA	33219-1_{1..2275}	n337921|AK091004|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|305|NULL|-1.0390000|-0.3879498	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337921|AK091004|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|305|NULL|-1.0390000|-0.3879498	chr1	 48844750	 48847024	-	NA	NA	NA	NA	SPATA6	NA	chr1:48834750-48857025	inner
CUST_24645_PI429285431	0.8973698	A	0.91249734	A	0.989569170683757	0	lncRNA	26194-1_{1..318}	lnc-GABRA5-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-GABRA5-3:1	chr15	 27673220	 27673537	+	lnc-GABRA5-3	lnc-GABRA5-3:1	ENSG00000259152.1	RP11-100M12.2	GABRG3	NA	chr15:27663220-27683484	inner
CUST_20287_PI429285431	0.92163396	A	0.9103051	A	1.00788347963567	0	lncRNA	21931-1_{1..691}	lnc-TCERG1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCERG1-2:1	chr5	145996499	145997189	+	lnc-TCERG1-2	lnc-TCERG1-2:1	ENSG00000250407.1	CTB-99A3.1	PPP2R2B	NA	chr5:145986499-146006567	inner
LNCA_21_P0010370	7.6981845	P	7.672079	P	1.01825965934424	0	lncRNA	ENST00000458154	NA	NA	NA	NA	XLOC_014300	NA	ENST00000458154	NA	NA	"BROAD Institute lincRNA (XLOC_014300), lincRNA [TCONS_00029446]"	chr22:20330790-20330731	hs|22q11.21	Agilent_HUMAN_G3V2	ENST00000458154	ENST00000458154	chr22	 20330731	 20330790	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48298_PI429285431	3.7431347	P	4.255412	P	0.701114851284712	0	lncRNA	52156-1_{1..2475}	hg19_lincRNAsTranscripts_TCONS_l2_00000124 range=chr1:16973750-16976800 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000124 range=chr1:16973750-16976800 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16973750	 16976224	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_146_PI429201921	1.286007	A	2.0718613	A	0.580008400238973	0	lncRNA	128-2_{3001..3888}	TC17002692.hg.1	TCONS_00025144-XLOC_012506 // Rinn lincRNAs // linc-PHB-1 chr17:-:47535222-47539111 // chr17 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr17:-:47535222-47539111	NA	Affy_HUMAN_HTA2.0	TCONS_00025144-XLOC_012506	linc-PHB-1	chr17	 47535222	 47539111	-	NA	NA	NA	NA	PRDM16	NA	chr1:2985742-2988315	Unknown
CUST_19663_PI429285431	4.4835033	P	4.895558	P	0.751552243275954	0	lncRNA	21319-1_{1..634}	lnc-ATP5I-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATP5I-1:2	chr4	   648871	   649504	-	lnc-ATP5I-1	lnc-ATP5I-1:2	ENSG00000242686.1	RP11-1191J2.2	PDE6B	"hg19_refFlat_PDE6B:range=chr4:619416-6638965'pad=0,hg19_refFlat_PDE6B:range=chr4:619416-6638965'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40chr4:638871-659266"	NA	inner
CUST_45381_PI429285431	0.90574074	A	0.91334766	A	0.99474116121237	0	lncRNA	49814-2_{3001..4133}	"gi|341915489|ref|XR_132565.1| PREDICTED: Homo sapiens uncharacterized LOC100507137 (FP2234), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915489|ref|XR_132565.1| PREDICTED: Homo sapiens uncharacterized LOC100507137 (FP2234), misc_RNA"	NA	NA	NA	NA	NA	XR_132565.1	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.39;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10"	NA	Unknown
CUST_17976_PI429285431	0.90687156	A	0.9107041	A	0.997347011116258	0	lncRNA	19709-1_{1..648}	lnc-TCF4-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF4-5:2	chr18	 53857995	 53858642	-	lnc-TCF4-5	lnc-TCF4-5:2	XLOC_012852	linc-TCF4-4	NA	NA	NA	inter
CUST_27395_PI429285431	2.409775	A	1.1198812	A	2.4451005594531	0	lncRNA	28959-1_{1..1628}	n324559|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040181|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040181|-1.1835700|-0.3196222	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324559|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040181|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040181|-1.1835700|-0.3196222	chr6	 28237537	 28239164	+	NA	NA	NA	NA	PGBD1	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90chr6:28249314-28255351"	NA	inner
CUST_49574_PI429285431	0.91055685	A	0.91984886	A	0.993579966513128	0	lncRNA	53363-2_{3001..4522}	hg19_lincRNAsTranscripts_TCONS_l2_00024431 range=chr6:134785876-134828335 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024431 range=chr6:134785876-134828335 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	134788876	134790397	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70"	NA	inter
LNCA_21_P0013216	0.88566786	A	0.8900731	A	0.996951177442051	0	lncRNA	AX721081	NA	AX721081	NA	NA	XLOC_l2_013443	NA	ENST00000434932	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013443), lincRNA [TCONS_l2_00027128]"	chr7:63610939-63610998	hs|7q11.21	Agilent_HUMAN_G3V2	AX721081	AX721081	chr7	 63610939	 63610998	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48070_PI429285431	3.2638369	P	3.464857	P	0.869935232461831	0	lncRNA	51946-1_{1..1646}	"gi|410170118|ref|XR_172462.1| PREDICTED: Homo sapiens uncharacterized LOC100287063 (LOC100287063), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170118|ref|XR_172462.1| PREDICTED: Homo sapiens uncharacterized LOC100287063 (LOC100287063), misc_RNA"	NA	NA	NA	NA	NA	XR_172462.1	NA	NA	NA	NA	NA	Unknown
CUST_35316_PI429285431	0.9598323	A	1.5671496	A	0.656416177548823	0	lncRNA	36721-1_{1..1560}	n342344|BC035780|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4836|NULL|-1.0193000|-0.3336089	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n342344|BC035780|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4836|NULL|-1.0193000|-0.3336089	chr19	 24110589	 24112148	+	NA	NA	NA	NA	ZNF726	NA	chr19:24100589-24106517	inner
CUST_13633_PI429285431	1.1374875	A	0.90634465	A	1.17376439407062	0	lncRNA	15272-1_{1..2076}	lnc-GRXCR1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRXCR1-5:1	chr4	 43766479	 43768554	+	lnc-GRXCR1-5	lnc-GRXCR1-5:1	XLOC_003527	linc-GUF1-2	NA	NA	NA	inter
CUST_32549_PI429285431	5.372967	P	5.1865816	P	1.13790916710351	0	lncRNA	34214-1_{1..1892}	n339163|BC065843|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1594|NULL|-0.9618850|-0.2826903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339163|BC065843|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1594|NULL|-0.9618850|-0.2826903	chr2	227867429	227869320	-	NA	NA	NA	NA	COL4A4	NA	chr2:227867427-227879240	inner
CUST_49551_PI429285431	0.8840576	A	0.8919897	A	0.994516974208393	0	lncRNA	53342-1_{1..217}	hg19_lincRNAsTranscripts_TCONS_l2_00024825 range=chr6:75304150-75346316 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024825 range=chr6:75304150-75346316 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 75304150	 75304366	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4700_PI429285431	0.8826227	A	0.88583916	A	0.997773003264614	0	lncRNA	4647-1_{1..1297}	"transcript_id ""ENST00000602192.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602192.1"" | genecode_v17"	chr13	113619149	113620445	-	ENSG00000267868.1	ENST00000602192.1	RP11-120K24.3	RP11-120K24.3-001	MCF2L	NA	chr13:113623535-113630445	inter
CUST_989_PI429285431	1.7469804	A	2.3609421	A	0.653399972876306	0	lncRNA	979-1_{1..3000}	"transcript_id ""ENST00000451400.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000451400.1"" | genecode_v17"	chr2	105049725	105052724	+	ENSG00000235597.1	ENST00000451400.1	AC013402.2	AC013402.2-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30"	NA	inter
LNCA_21_P0007409	2.774624	A	3.5337112	P	0.590870058763237	0	lncRNA	TCONS_00019778	NA	NA	NA	NA	XLOC_009577	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009577), lincRNA [TCONS_00019778]"	chr11:119478449-119478390	hs|11q23.3	Agilent_HUMAN_G3V2	TCONS_00019778	TCONS_00019778	chr11	119478390	119478449	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011155	0.88318336	A	0.8837435	A	0.999611815901232	0	lncRNA	TCONS_l2_00006966	NA	NA	NA	NA	XLOC_l2_003820	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003820), lincRNA [TCONS_l2_00006966]"	chr13:90214199-90214258	hs|13q31.3	Agilent_HUMAN_G3V2	TCONS_l2_00006966	TCONS_l2_00006966	chr13	 90214199	 90214258	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48328_PI429285431	4.221625	P	4.974841	P	0.593279566485753	0	lncRNA	52184-1_{1..1563}	hg19_lincRNAsTranscripts_TCONS_l2_00001144 range=chr1:36545654-36547930 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001144 range=chr1:36545654-36547930 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 36545654	 36547216	-	NA	NA	NA	NA	TEKT2	NA	chr1:36545921-36553876	inter
LNCA_21_P0004706	0.88343143	A	0.8836104	A	0.999875955143295	0	lncRNA	ENST00000435810	NA	NA	NA	NA	XLOC_005535	NA	ENST00000435810	NA	NA	"BROAD Institute lincRNA (XLOC_005535), lincRNA [TCONS_00011412]"	chr6:166189181-166189240	hs|6q27	Agilent_HUMAN_G3V2	ENST00000435810	ENST00000435810	chr6	166189181	166189240	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17588_PI429285431	4.5347137	P	4.5376577	P	0.997961455360715	0	lncRNA	19314-1_{1..257}	lnc-IRF2BP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRF2BP2-3:1	chr1	234855127	234855383	-	lnc-IRF2BP2-3	lnc-IRF2BP2-3:1	XLOC_001264	linc-IRF2BP2-2	NA	NA	NA	inter
CUST_30381_PI429285431	5.374982	P	5.780767	P	0.754825464984476	0	lncRNA	32157-1_{1..793}	n335493|BC054890|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259480|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259480|3.2867000|-0.2479524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335493|BC054890|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259480|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259480|3.2867000|-0.2479524	chr2	231090475	231091267	+	NA	NA	NA	NA	SP110	NA	chr2:231080475-231090444	inner
CUST_47615_PI429285431	2.1869717	A	1.1151379	A	2.10210363965559	0	lncRNA	51610-3_{6001..7952}	"gi|371877753|ref|NR_028407.2| Homo sapiens armadillo repeat containing, X-linked 4 (ARMCX4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|371877753|ref|NR_028407.2| Homo sapiens armadillo repeat containing, X-linked 4 (ARMCX4), transcript variant 2, non-coding RNA"	NW_004070883.1	   105939	   107890	+	100131755	NR_028407.2	NA	NA	NA	"hg19_refFlat_PPIAL4D:range=chr1:148201967-1482024615'pad=0,hg19_refFlat_PPIAL4D:range=chr1:148201967-1482024615'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_PPIAL4F:range=chr1:148201967-1482024615'pad=0,hg19_refFlat_PPIAL4F:range=chr1:148201967-1482024615'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_PPIAL4D:range=chr1:148806090-1488065845'pad=0,hg19_refFlat_PPIAL4D:range=chr1:148806090-1488065845'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_PPIAL4E:range=chr1:148644086-1486445805'pad=0,hg19_refFlat_PPIAL4E:range=chr1:148644086-1486445805'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_PPIAL4F:range=chr1:148806090-1488065845'pad=0,hg19_refFlat_PPIAL4F:range=chr1:148806090-1488065845'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20"	NA	Unknown
CUST_46567_PI429285431	7.460214	P	7.5085664	P	0.967040086651149	0	lncRNA	50751-1_{1..2590}	"gi|166091447|ref|NR_003659.2| Homo sapiens WAS protein family homolog 3 pseudogene (WASH3P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|166091447|ref|NR_003659.2| Homo sapiens WAS protein family homolog 3 pseudogene (WASH3P), non-coding RNA"	Chr15	102501016	102503605	+	374666	NR_003659.2	NA	NA	NA	NA	NA	inter
CUST_48813_PI429285431	1.0739748	A	1.0471658	A	1.01875631340758	0	lncRNA	52651-1_{1..209}	hg19_lincRNAsTranscripts_TCONS_l2_00014337 range=chr2:242823550-242829947 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014337 range=chr2:242823550-242829947 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	242823550	242823758	+	NA	NA	NA	NA	C2orf85	NA	chr2:242813550-242815482	inter
CUST_5709_PI429285431	5.698072	P	6.066351	P	0.77470609755975	0	lncRNA	5633-1_{1..101}	"transcript_id ""ENST00000591554.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591554.1"" | genecode_v17"	chr17	  1953202	  1953302	-	ENSG00000267200.1	ENST00000591554.1	hsa-mir-132	hsa-mir-132.1-001	SMG6	NA	chr17:1963133-1963302	inter
CUST_50772_PI429285431	5.4580936	P	5.611761	P	0.898962350179831	0	lncRNA	54430-3_{6001..6266}	hg19_lincRNAsTranscripts_TCONS_l2_00004572 range=chr11:65266529-65274354 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004572 range=chr11:65266529-65274354 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65272529	 65272794	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8452_PI429285431	8.467341	P	8.512966	P	0.968869995063767	0	lncRNA	10020-2_{3001..5740}	lnc-MUC5B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MUC5B-1:1	chr11	  1298067	  1300806	+	lnc-MUC5B-1	lnc-MUC5B-1:1	ENSG00000227631	ENST00000446839	TOLLIP	"hg19_refFlat_TOLLIP:range=chr11:1298269-13307285'pad=0,hg19_refFlat_TOLLIP:range=chr11:1298269-13307285'pad=0 3'pad=0 strand=- repeatMasking=none,-108.00chr11:1295598-1309533"	NA	inner
CUST_44960_PI429285431	5.8694496	P	5.943801	P	0.949769017636524	0	lncRNA	49471-1_{1..391}	"gi|310119994|ref|XR_108809.1| PREDICTED: Homo sapiens uncharacterized DKFZp434F142 (DKFZP434F142), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119994|ref|XR_108809.1| PREDICTED: Homo sapiens uncharacterized DKFZp434F142 (DKFZP434F142), misc_RNA"	NA	NA	NA	NA	NA	XR_108809.1	NA	NA	NA	NA	NA	Unknown
CUST_44171_PI429285431	3.0004115	A	4.308011	P	0.403992523764111	0	lncRNA	48829-2_{3001..3684}	"gi|222418777|ref|NR_026701.1| Homo sapiens glycerate kinase (GLYCTK), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|222418777|ref|NR_026701.1| Homo sapiens glycerate kinase (GLYCTK), transcript variant 5, non-coding RNA"	Chr3	 52324836	 52325519	+	132158	NR_026701.1	NA	NA	NA	NA	NA	inter
CUST_45011_PI429285431	1.6947626	A	1.6220298	A	1.05170697564465	0	lncRNA	49513-1_{1..1593}	"gi|336595235|ref|NR_038948.1| Homo sapiens uncharacterized LOC100506136 (LOC100506136), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336595235|ref|NR_038948.1| Homo sapiens uncharacterized LOC100506136 (LOC100506136), non-coding RNA"	Chr7	 96250969	 96252561	-	100506136	NR_038948.1	NA	NA	NA	NA	NA	inter
CUST_41403_PI429285431	2.8386521	A	3.7880063	P	0.517864223911127	0	lncRNA	42520-1_{1..73}	ENST00000365699 ncrna:miRNA chromosome:GRCh37:10:104196269:104196341:1 gene:ENSG00000202569 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365699 ncrna:miRNA chromosome:GRCh37:10:104196269:104196341:1 gene:ENSG00000202569 gene_biotype:miRNA transcript_biotype:miRNA	chr10	104196269	104196341	+	ENSG00000202569	ENST00000365699	NA	NA	CUEDC2	NA	chr10:104186269-104192423	inter
LNCA_21_P0006104	0.8886155	A	0.8884728	A	1.00009891699463	0	lncRNA	ENST00000423637	NA	BC034316	NA	Hs.650491	XLOC_007834	NA	ENST00000423637	THC2605889	NA	"BROAD Institute lincRNA (XLOC_007834), lincRNA [TCONS_00015874]"	chr9:117881974-117881915	hs|9q33.1	Agilent_HUMAN_G3V2	ENST00000423637	ENST00000423637	chr9	117881915	117881974	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22720_PI429285431	1.712208	A	1.9258672	A	0.862347228553008	0	lncRNA	24304-1_{1..447}	lnc-OTUD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OTUD3-1:1	chr1	 20145736	 20146182	+	lnc-OTUD3-1	lnc-OTUD3-1:1	ENSG00000235434.1	RP11-91K11.2	RNF186	"hg19_refFlat_RNF186:range=chr1:20140911-201415945'pad=0,hg19_refFlat_RNF186:range=chr1:20140911-201415945'pad=0 3'pad=0 strand=- repeatMasking=none,-102.50chr1:20140522-20141771"	NA	inter
CUST_46672_PI429285431	1.2534323	A	2.473841	A	0.429161124262382	0	lncRNA	50840-1_{1..2228}	"gi|300796122|ref|NR_034083.1| Homo sapiens uncharacterized LOC100130894 (LOC100130894), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300796122|ref|NR_034083.1| Homo sapiens uncharacterized LOC100130894 (LOC100130894), non-coding RNA"	NA	NA	NA	NA	NA	NR_034083.1	NA	NA	NA	"hg19_refFlat_VAC14:range=chr16:70721831-708348035'pad=0,hg19_refFlat_VAC14:range=chr16:70721831-708348035'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90"	NA	Unknown
CUST_25921_PI429285431	8.55769	P	8.197638	P	1.28347215775479	0	lncRNA	27440-1_{1..1175}	lnc-BLID-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BLID-1:2	chr11	121975779	121976953	-	lnc-BLID-1	lnc-BLID-1:2	ENSG00000255248.2	RP11-166D19.1	BLID	NA	chr11:121986062-121986650	inter
CUST_29868_PI429285431	1.6658869	A	1.3596525	A	1.23647613945403	0	lncRNA	31631-1_{1..257}	n333861|L29145|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192788|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192788|0.2704990|-0.3417829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333861|L29145|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192788|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192788|0.2704990|-0.3417829	chr6	 76542603	 76542859	+	NA	NA	NA	NA	MYO6	NA	chr6:76532603-76560975	inner
CUST_28271_PI429285431	1.8936824	A	2.6815498	A	0.579199635651769	0	lncRNA	29906-1_{1..520}	n325565|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000132550|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000132550|-0.9952620|-0.1081744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325565|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000132550|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000132550|-0.9952620|-0.1081744	chr17	 19262939	 19263458	+	NA	NA	NA	NA	B9D1	NA	chr17:19252939-19266046	inner
CUST_82_PI429285431	1.553294	A	1.402846	A	1.10991408010877	0	lncRNA	76-1_{1..1799}	"transcript_id ""ENST00000435144.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000435144.1"" | genecode_v17"	chr18	 48918412	 48920210	+	ENSG00000227115.2	ENST00000435144.1	RP11-267C16.1	RP11-267C16.1-002	NA	NA	NA	inter
CUST_8736_PI429285431	2.5434713	A	2.663705	A	0.920038602883559	0	lncRNA	10279-1_{1..977}	lnc-MFSD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MFSD4-1:1	chr1	205719261	205720237	+	lnc-MFSD4-1	lnc-MFSD4-1:1	ENSG00000247614	AC119673.1	NUCKS1	NA	chr1:205709261-205719372	inner
CUST_42847_PI429285431	7.4034038	P	7.3597307	P	1.03073473834036	0	lncRNA	45889-1_{1..73}	ENST00000384252 ncrna:snoRNA chromosome:GRCh37:X:135961358:135961430:-1 gene:ENSG00000206979 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384252 ncrna:snoRNA chromosome:GRCh37:X:135961358:135961430:-1 gene:ENSG00000206979 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	135961358	135961430	-	ENSG00000206979	ENST00000384252	NA	NA	RBMX	NA	chrX:135951358-135962939	inner
CUST_793_PI429285431	0.88106674	A	1.2813421	A	0.757713648431479	0	lncRNA	786-1_{1..308}	"transcript_id ""ENST00000448241.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448241.1"" | genecode_v17"	chr2	 20650803	 20651110	+	ENSG00000228950.1	ENST00000448241.1	AC023137.2	AC023137.2-001	RHOB	NA	chr2:20646835-20649201	inter
CUST_38011_PI429285431	2.0874271	A	2.2490525	A	0.894017266428361	0	lncRNA	39096-1_{1..1719}	n377584|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029949||-0.9691010|-0.2146544	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377584|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029949||-0.9691010|-0.2146544	chr6	  2680309	  2682027	+	NA	NA	NA	NA	MYLK4	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.20;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_MYLK4:range=chr6:2671535-27495285'pad=0,hg19_refFlat_MYLK4:range=chr6:2671535-27495285'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00chr6:2670309-2696514"	NA	inner
CUST_31494_PI429285431	0.89335775	A	1.8829329	A	0.503626062798915	0	lncRNA	33258-1_{1..1285}	n337975|BC030753|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|361|NULL|-1.0503600|-0.2651788	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337975|BC030753|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|361|NULL|-1.0503600|-0.2651788	chr1	 61405915	 61407199	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13232_PI429285431	2.1273568	A	1.8006321	A	1.25416285804095	0	lncRNA	14860-1_{1..688}	lnc-ARHGEF5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGEF5-1:3	chr7	144087788	144088475	+	lnc-ARHGEF5-1	lnc-ARHGEF5-1:3	XLOC_006281	linc-CNTNAP2-3	NOBOX	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30chr7:144094333-144098382"	NA	inter
CUST_46760_PI429285431	13.149857	P	12.850833	P	1.23031181147283	0	lncRNA	50910-1_{1..1215}	"gi|224548954|ref|NR_027159.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|224548954|ref|NR_027159.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 3, non-coding RNA"	Chr17	 16342301	 16343515	+	125144	NR_027159.1	NA	NA	NA	NA	NA	inter
CUST_5715_PI429285431	1.4918345	A	1.0878592	A	1.32314878643398	0	lncRNA	5639-1_{1..1273}	"transcript_id ""ENST00000573270.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000573270.1"" | genecode_v17"	chr17	  4513744	  4515016	+	ENSG00000261863.1	ENST00000573270.1	RP11-141J13.5	RP11-141J13.5-001	SMTNL2	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chr17:4503744-4511614"	NA	inter
LNCA_21_P0014248	4.421411	P	4.1431885	P	1.21269983357237	0	lncRNA	ENST00000437232	XR_109013	XR_109013	NA	Hs.730717	LOC100507347	NA	ENST00000437232	THC2499596	NA	"PREDICTED: Homo sapiens hypothetical LOC100507347 (LOC100507347), miscRNA [XR_109013]"	chr10:17256478-17256419	hs|10p13	Agilent_HUMAN_G3V2	ENST00000437232	ENST00000437232	chr10	 17256419	 17256478	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4214_PI429285431	0.90147763	A	1.1429241	A	0.845896776903414	0	lncRNA	4173-1_{1..501}	"transcript_id ""ENST00000552182.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552182.1"" | genecode_v17"	chr12	 30383712	 30384212	-	ENSG00000257756.1	ENST00000552182.1	RP11-776A13.3	RP11-776A13.3-001	NA	NA	NA	inter
CUST_21560_PI429285431	0.9592496	A	0.90509826	A	1.0382481779931	0	lncRNA	23176-1_{1..427}	lnc-SLC19A2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC19A2-1:2	chr1	169429491	169429917	-	lnc-SLC19A2-1	lnc-SLC19A2-1:2	ENSG00000234437.1	RP1-206D15.3	SLC19A2	NA	chr1:169433147-169439659	inter
CUST_3417_PI429285431	1.0359082	A	0.96863335	A	1.04773571379255	0	lncRNA	3389-1_{1..935}	"transcript_id ""ENST00000591621.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591621.1"" | genecode_v17"	chr9	 45487056	 45487990	+	ENSG00000232116.2	ENST00000591621.1	RP11-187C18.2	RP11-187C18.2-002	NA	NA	NA	inter
CUST_51190_PI429285431	2.0421066	A	1.7443527	A	1.22922916313013	0	lncRNA	54811-1_{1..1159}	hg19_lincRNAsTranscripts_TCONS_l2_00007938 range=chr14:104992838-104994118 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007938 range=chr14:104992838-104994118 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	104992838	104993996	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39968_PI429285431	4.439148	P	4.6529856	P	0.86224059948054	0	lncRNA	40838-2_{3001..4362}	n407031|NR_024527|lncRNA|Homosapiens||RefGeneNoncode|NR_024527||2.2562400|-0.1689213	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407031|NR_024527|lncRNA|Homosapiens||RefGeneNoncode|NR_024527||2.2562400|-0.1689213	chr11	118007091	118008452	-	NA	NA	NA	NA	SCN4B	NA	chr11:118004092-118023630	inter
CUST_24514_PI429285431	3.4766219	P	3.5911577	P	0.923679465029025	0	lncRNA	26065-1_{1..469}	lnc-COLQ-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COLQ-1:1	chr3	 15481942	 15482410	-	lnc-COLQ-1	lnc-COLQ-1:1	ENSG00000249786.1	EAF1-AS1	EAF1	"hg19_refFlat_EAF1:range=chr3:15469287-154806625'pad=0,hg19_refFlat_EAF1:range=chr3:15469287-154806625'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90chr3:15471942-15484120"	NA	inner
CUST_326_PI429201921	1.0830544	A	0.9214644	A	1.11851918351174	0	lncRNA	217-1_{1..3000}	TC20001530.hg.1	TCONS_l2_00016902-XLOC_l2_008825 // Broad TUCP // linc-DEFB121 chr20:-:30009241-30016983 // chr20 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr20:-:30009241-30016983	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00016902-XLOC_l2_008825	linc-DEFB121	chr20	 30009241	 30016983	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2621_PI429285431	0.91172564	A	0.9221637	A	0.992790998553759	0	lncRNA	2608-1_{1..660}	"transcript_id ""ENST00000451729.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451729.1"" | genecode_v17"	chr6	123392316	123392975	+	ENSG00000225504.3	ENST00000451729.1	RP11-160A10.2	RP11-160A10.2-002	CLVS2	NA	chr6:123382316-123385063	inter
CUST_9583_PI429285431	0.90544015	A	1.4865983	A	0.668426969901902	0	lncRNA	11099-1_{1..551}	lnc-PREX1-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PREX1-6:2	chr20	 46988228	 46988778	-	lnc-PREX1-6	lnc-PREX1-6:2	XLOC_013775	linc-SULF2-8	NA	NA	NA	inter
CUST_13660_PI429285431	1.4538858	A	0.9256936	A	1.44212098218541	0	lncRNA	15298-1_{1..397}	lnc-LBR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-LBR-1:1	chr1	225652925	225653321	-	lnc-LBR-1	lnc-LBR-1:1	XLOC_001230	linc-LBR	NA	NA	NA	inter
CUST_34346_PI429285431	2.3469944	A	1.3506037	A	1.99500270142998	0	lncRNA	35838-1_{1..3000}	n341217|CR627312|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3685|NULL|-0.9728220|-0.3593078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341217|CR627312|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3685|NULL|-0.9728220|-0.3593078	chr7	 30118701	 30121700	+	NA	NA	NA	NA	PLEKHA8	NA	chr7:30108701-30134266	inner
CUST_8594_PI429285431	5.79571	P	5.502039	P	1.22575530029299	0	lncRNA	10150-1_{1..762}	lnc-C4orf39-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C4orf39-1:5	chr4	165819878	165820639	+	lnc-C4orf39-1	lnc-C4orf39-1:5	ENSG00000248329	RP11-366M4.3	NA	NA	NA	inter
CUST_22728_PI429285431	1.3804562	A	2.266304	A	0.541169411001288	0	lncRNA	24312-1_{1..297}	lnc-MAFF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAFF-1:1	chr22	 38628054	 38628350	+	lnc-MAFF-1	lnc-MAFF-1:1	ENSG00000235246.1	RP1-5O6.5	TMEM184B	NA	chr22:38618054-38638254	inner
CUST_1196_PI429285431	2.234345	A	1.4664068	A	1.70283447047397	0	lncRNA	1187-1_{1..2852}	"transcript_id ""ENST00000447194.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447194.1"" | genecode_v17"	chr2	195595319	195598170	+	ENSG00000230173.1	ENST00000447194.1	AC006196.1	AC006196.1-001	NA	NA	NA	inter
CUST_3302_PI429285431	2.024982	A	1.627784	A	1.31694765169025	0	lncRNA	3280-1_{1..429}	"transcript_id ""ENST00000519123.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519123.1"" | genecode_v17"	chr8	127530943	127531371	+	ENSG00000253530.1	ENST00000519123.1	RP11-103H7.3	RP11-103H7.3-001	NA	NA	NA	inter
LNCA_21_P0003790	0.9013709	A	1.700432	A	0.574723083236372	0	lncRNA	TCONS_00008636	NA	NA	NA	NA	XLOC_004141	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004141), lincRNA [TCONS_00008636]"	chr4:162021106-162021047	hs|4q32.2	Agilent_HUMAN_G3V2	TCONS_00008636	TCONS_00008636	chr4	162021047	162021106	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3869_PI429285431	5.012911	P	5.297961	P	0.820713164566797	0	lncRNA	3838-1_{1..602}	"transcript_id ""ENST00000524885.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524885.1"" | genecode_v17"	chr11	 17716569	 17717170	+	ENSG00000254586.1	ENST00000524885.1	RP11-358H18.3	RP11-358H18.3-001	NA	NA	NA	inter
CUST_15924_PI429285431	0.8942175	A	0.8939885	A	1.00015874330273	0	lncRNA	17619-1_{1..246}	lnc-E2F7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-E2F7-1:1	chr12	 77622696	 77622941	-	lnc-E2F7-1	lnc-E2F7-1:1	XLOC_010134	linc-E2F7-4	NA	NA	NA	inter
CUST_291_PI429201921	2.6403632	A	1.6898983	A	1.9324952927773	0	lncRNA	204-2_{3001..6000}	TC08002200.hg.1	TCONS_l2_00028534-XLOC_l2_014420 // Broad TUCP // linc-DEFB105B-4 chr8:-:7847937-7855043 // chr8 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr8:-:7847937-7855043	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00028534-XLOC_l2_014420	linc-DEFB105B-4	chr8	  7847937	  7855043	-	NA	NA	NA	NA	SCMH1	NA	chr1:41698045-41707815	Unknown
CUST_28829_PI429285431	0.8891775	A	0.90019774	A	0.992390452045845	0	lncRNA	30537-1_{1..440}	n326242|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098642|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098642|-0.9441110|-0.1744132	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326242|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098642|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098642|-0.9441110|-0.1744132	chr1	211732266	211732705	+	NA	NA	NA	NA	SLC30A1	NA	chr1:211748381-211752099	inner
CUST_41027_PI429285431	1.3478297	A	1.4857159	A	0.908849803829206	0	lncRNA	41686-1_{1..1538}	n411653|NR_040116|lncRNA|Homosapiens||RefGeneNoncode|NR_040116||-0.0985201|-0.1269215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411653|NR_040116|lncRNA|Homosapiens||RefGeneNoncode|NR_040116||-0.0985201|-0.1269215	chr17	   266211	   267748	-	NA	NA	NA	NA	C17orf97	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80chr17:260118-264457"	NA	inner
CUST_8384_PI429285431	1.3226627	A	1.0993446	A	1.16741547701952	0	lncRNA	9963-1_{1..3000}	lnc-OIT3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OIT3-1:1	chr10	 74774855	 74777854	+	lnc-OIT3-1	lnc-OIT3-1:1	ENSG00000247170	ENST00000502140	P4HA1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_P4HA1:range=chr10:74767980-748346415'pad=0,hg19_refFlat_P4HA1:range=chr10:74767980-748346415'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50chr10:74766975-74786047"	NA	inner
CUST_15821_PI429285431	1.3912044	A	1.4000903	A	0.993859692682481	0	lncRNA	17510-2_{3001..4185}	lnc-NAF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAF1-1:1	chr4	164043682	164044866	-	lnc-NAF1-1	lnc-NAF1-1:1	XLOC_004144	linc-FSTL5-2	NAF1	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30chr4:164047860-164051637"	NA	inter
CUST_11647_PI429285431	0.8816579	A	0.8858071	A	0.997128125462563	0	lncRNA	13224-1_{1..263}	lnc-AIPL1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AIPL1-2:2	chr17	  6093774	  6094036	-	lnc-AIPL1-2	lnc-AIPL1-2:2	XLOC_012367	linc-NLRP1-2	NA	NA	NA	inter
CUST_1154_PI429285431	0.8841085	A	0.88872695	A	0.996803852991208	0	lncRNA	1143-1_{1..462}	"transcript_id ""ENST00000442316.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442316.1"" | genecode_v17"	chr2	168149681	168150142	+	ENSG00000228222.1	ENST00000442316.1	AC074363.1	AC074363.1-001	NA	NA	NA	inter
CUST_25780_PI429285431	3.8048558	P	3.4302347	P	1.29649900590471	0	lncRNA	27303-3_{6001..6245}	lnc-BHMT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BHMT2-1:1	chr5	 77777327	 77777571	+	lnc-BHMT2-1	lnc-BHMT2-1:1	ENSG00000085365.12	SCAMP1	LHFPL2	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10chr5:77781038-77786562"	NA	inner
LNCA_21_P0003307	0.8872646	A	0.892905	A	0.996098005285636	0	lncRNA	TCONS_00007318	NA	NA	NA	NA	XLOC_003350	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003350), lincRNA [TCONS_00007318]"	chr3:182506203-182506144	hs|3q26.33	Agilent_HUMAN_G3V2	TCONS_00007318	TCONS_00007318	chr3	182506144	182506203	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6766_PI429285431	1.7356614	A	1.9014163	A	0.891461933833989	0	lncRNA	6713-1_{1..554}	"transcript_id ""ENST00000602935.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602935.1"" | genecode_v17"	chr21	 17442853	 17443406	+	ENSG00000215386.6	ENST00000602935.1	LINC00478	LINC00478-012	NA	NA	NA	inter
LNCA_21_P0003288	0.8866361	A	0.8918392	A	0.996399981565544	0	lncRNA	ENST00000479244	NA	NA	NA	NA	XLOC_003176	NA	ENST00000479244	NA	NA	"BROAD Institute lincRNA (XLOC_003176), lincRNA [TCONS_00007195]"	chr3:86313788-86313729	hs|3p12.1	Agilent_HUMAN_G3V2	ENST00000479244	ENST00000479244	chr3	 86313729	 86313788	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44565_PI429285431	0.8816066	A	0.887522	A	0.995908151686649	0	lncRNA	49147-1_{1..1154}	"gi|212275960|ref|NR_024398.1| Homo sapiens ZBED3 antisense RNA 1 (ZBED3-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|212275960|ref|NR_024398.1| Homo sapiens ZBED3 antisense RNA 1 (ZBED3-AS1), non-coding RNA"	Chr5	 76382623	 76383776	+	728723	NR_024398.1	NA	NA	NA	NA	NA	inter
CUST_14333_PI429285431	0.91804445	A	1.0989422	A	0.882153885020024	0	lncRNA	15989-1_{1..292}	lnc-CTD-2203A3.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2203A3.1.1-1:1	chr5	 51283529	 51283820	+	lnc-CTD-2203A3.1.1-1	lnc-CTD-2203A3.1.1-1:1	XLOC_004380	linc-PELO-2	NA	NA	NA	inter
CUST_12_PI429285431	0.9034275	A	0.89406115	A	1.00651337949034	0	lncRNA	11-1_{1..2007}	"transcript_id ""ENST00000381078.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000381078.1"" | genecode_v17"	chr6	   203313	   205319	+	ENSG00000205653.1	ENST00000381078.1	RP3-416J7.5	RP3-416J7.5-001	NA	NA	NA	inter
LNCA_21_P0008869	9.913278	P	9.585315	P	1.25523979843052	0	lncRNA	TCONS_00024221	NA	NA	NA	NA	XLOC_011616	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011616), lincRNA [TCONS_00024221]"	chr15:102149900-102149841	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_00024221	TCONS_00024221	chr15	102149841	102149900	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006069	3.6875558	P	3.789678	P	0.931661511823734	0	lncRNA	ENST00000443359	NA	NA	NA	NA	XLOC_007653	NA	ENST00000443359	NA	NA	"BROAD Institute lincRNA (XLOC_007653), lincRNA [TCONS_00015796]"	chr9:18360655-18360596	hs|9p22.2	Agilent_HUMAN_G3V2	ENST00000443359	ENST00000443359	chr9	 18360596	 18360655	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22737_PI429285431	9.935464	P	9.889355	P	1.03247653928053	0	lncRNA	24320-1_{1..1069}	lnc-U47924.19.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-U47924.19.1-1:1	chr12	  7084858	  7085926	+	lnc-U47924.19.1-1	lnc-U47924.19.1-1:1	ENSG00000126749.7	EMG1	PHB2	NA	chr12:7074858-7079916	inner
CUST_28901_PI429285431	1.1026746	A	1.0660448	A	1.02571490995358	0	lncRNA	30618-1_{1..335}	n326325|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000084248|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000084248|-1.2014900|-0.5366117	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326325|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000084248|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000084248|-1.2014900|-0.5366117	chr1	172258269	172258603	+	NA	NA	NA	NA	DNM3	NA	chr1:172248269-172268746	inner
CUST_22673_PI429285431	2.555862	A	1.6349901	A	1.89325914845239	0	lncRNA	24256-1_{1..411}	lnc-KIAA1009-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-KIAA1009-1:1	chr6	 85265737	 85266147	-	lnc-KIAA1009-1	lnc-KIAA1009-1:1	ENSG00000231776.1	RP1-90L14.1	NA	NA	NA	inter
CUST_31140_PI429285431	4.9308453	P	6.002098	P	0.475905588137623	0	lncRNA	32935-1_{1..317}	n337467|EF036503|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394756|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394756|1.4072100|-0.1818398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337467|EF036503|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394756|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394756|1.4072100|-0.1818398	chr19	 36368611	 36368927	+	NA	NA	NA	NA	NFKBID	NA	chr19:36379143-36380019	inner
CUST_49366_PI429285431	5.120428	P	5.3527117	P	0.85128628936809	0	lncRNA	53179-1_{1..845}	hg19_lincRNAsTranscripts_TCONS_l2_00022454 range=chr5:98861787-98913717 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022454 range=chr5:98861787-98913717 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 98861787	 98862631	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005346	0.8843644	A	0.88419145	A	1.00011988699075	0	lncRNA	TCONS_00013289	NA	NA	NA	NA	XLOC_005957	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005957), lincRNA [TCONS_00013289]"	chr7:465632-467272	hs|7p22.3	Agilent_HUMAN_G3V2	TCONS_00013289	TCONS_00013289	chr7	   465632	   467272	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48817_PI429285431	2.8320835	A	3.6122491	P	0.582299949997438	0	lncRNA	52654-1_{1..1584}	hg19_lincRNAsTranscripts_TCONS_l2_00014343 range=chr2:242912245-242914699 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014343 range=chr2:242912245-242914699 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	242912245	242913828	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51087_PI429285431	0.8921435	A	0.8857882	A	1.00441487524936	0	lncRNA	54725-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00006862 range=chr13:53767829-53775170 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006862 range=chr13:53767829-53775170 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 53767829	 53770828	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26472_PI429285431	0.9075122	A	0.9145489	A	0.99513440676997	0	lncRNA	27980-1_{1..2077}	lnc-PON1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PON1-1:1	chr7	 94843497	 94845573	-	lnc-PON1-1	lnc-PON1-1:1	ENSG00000236197.1	AC002429.5	PPP1R9A	NA	chr7:94833497-94853644	inner
CUST_18744_PI429285431	5.674284	P	5.674284	P	1	0	lncRNA	20440-1_{1..742}	lnc-LRIG2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LRIG2-4:1	chr1	113506594	113507335	+	lnc-LRIG2-4	lnc-LRIG2-4:1	ENSG00000226419	RP11-31F15.1	SLC16A1	NA	chr1:113496594-113498975	inter
LNCA_21_P0010141	6.106211	P	6.8882856	P	0.58152994979242	0	lncRNA	TCONS_00028797	NA	NA	NA	NA	XLOC_013868	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013868), lincRNA [TCONS_00028797]"	chr21:17860153-17860212	hs|21q21.1	Agilent_HUMAN_G3V2	TCONS_00028797	TCONS_00028797	chr21	 17860153	 17860212	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36203_PI429285431	0.8913387	A	0.90376383	A	0.991424537025426	0	lncRNA	37460-2_{3001..3704}	n344749|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_298|NULL|-1.3984900|-0.4049139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344749|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_298|NULL|-1.3984900|-0.4049139	chr2	152646936	152647639	-	NA	NA	NA	NA	ARL5A	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40chr2:152657480-152659559"	NA	inter
CUST_43627_PI429285431	6.272259	P	6.9902563	P	0.607940779350064	0	lncRNA	48386-1_{1..1987}	"gi|224282136|ref|NR_027023.1| Homo sapiens ASH1L antisense RNA 1 (ASH1L-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224282136|ref|NR_027023.1| Homo sapiens ASH1L antisense RNA 1 (ASH1L-AS1), non-coding RNA"	Chr1	155531772	155533758	+	645676	NR_027023.1	NA	NA	NA	"hg19_refFlat_YY1AP1:range=chr1:155629448-1556587675'pad=0,hg19_refFlat_YY1AP1:range=chr1:155629448-1556587675'pad=0 3'pad=0 strand=- repeatMasking=none,-101.90;hg19_refFlat_YY1AP1:range=chr1:155629448-1556582555'pad=0,hg19_refFlat_YY1AP1:range=chr1:155629448-1556582555'pad=0 3'pad=0 strand=- repeatMasking=none,-101.90;hg19_refFlat_YY1AP1:range=chr1:155630644-1556587675'pad=0,hg19_refFlat_YY1AP1:range=chr1:155630644-1556587675'pad=0 3'pad=0 strand=- repeatMasking=none,-101.90"	NA	inter
CUST_50380_PI429285431	0.894532	A	0.8901574	A	1.00303684355098	0	lncRNA	54090-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030347 range=chrX:123466548-123470714 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030347 range=chrX:123466548-123470714 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	123466548	123469547	+	NA	NA	NA	NA	SH2D1A	NA	chrX:123466768-123480714	inter
CUST_30160_PI429285431	4.4229474	P	4.407626	P	1.01067657741388	0	lncRNA	31934-1_{1..349}	n334836|AJ301608|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246865|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246865|-0.7430260|-0.2249449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334836|AJ301608|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246865|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246865|-0.7430260|-0.2249449	chr6	102337515	102337863	-	NA	NA	NA	NA	GRIK2	"hg19_refFlat_GRIK2:range=chr6:101847154-1025118845'pad=0,hg19_refFlat_GRIK2:range=chr6:101847154-1025118845'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_GRIK5:range=chr19:42503023-425699225'pad=0,hg19_refFlat_GRIK5:range=chr19:42503023-425699225'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_GRIK2:range=chr6:101847154-1025163865'pad=0,hg19_refFlat_GRIK2:range=chr6:101847154-1025163865'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_GRIK2:range=chr6:101847154-1025137885'pad=0,hg19_refFlat_GRIK2:range=chr6:101847154-1025137885'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00chr6:102327515-102386525"	NA	inner
LNCA_21_P0004141	2.644229	A	3.141037	P	0.708673005200119	0	lncRNA	ENST00000506196	NA	NA	NA	NA	XLOC_004882	NA	ENST00000506196	NA	NA	"BROAD Institute lincRNA (XLOC_004882), lincRNA [TCONS_00009697]"	chr5:72750071-72750012	hs|5q13.2	Agilent_HUMAN_G3V2	ENST00000506196	ENST00000506196	chr5	 72750012	 72750071	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7088_PI429285431	8.368742	P	8.534216	P	0.891635522866947	0	lncRNA	7023-1_{1..625}	"transcript_id ""ENST00000602920.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602920.1"" | genecode_v17"	chrX	 73164159	 73164783	+	ENSG00000225470.2	ENST00000602920.1	JPX	JPX-007	NA	NA	NA	inter
CUST_46149_PI429285431	8.608806	P	8.810486	P	0.869537408270622	0	lncRNA	50398-1_{1..1015}	"gi|397139470|ref|XR_158873.1| PREDICTED: Homo sapiens uncharacterized LOC100506691, transcript variant 2 (LOC100506691), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139470|ref|XR_158873.1| PREDICTED: Homo sapiens uncharacterized LOC100506691, transcript variant 2 (LOC100506691), misc_RNA"	Chr12	122501196	122502210	+	100506691	XR_158873.2	NA	NA	NA	NA	NA	inter
CUST_24886_PI429285431	7.0683947	P	7.3657894	P	0.813720532726315	0	lncRNA	26427-1_{1..494}	lnc-CDIPT-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDIPT-1:7	chr16	 29820881	 29821374	-	lnc-CDIPT-1	lnc-CDIPT-1:7	ENSG00000238045.4	AC009133.14	MAZ	"hg19_refFlat_MAZ:range=chr16:29818023-298215525'pad=0,hg19_refFlat_MAZ:range=chr16:29818023-298215525'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_MAZ:range=chr16:29818023-298210635'pad=0,hg19_refFlat_MAZ:range=chr16:29818023-298210635'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.40chr16:29817855-29822504"	NA	inner
CUST_50893_PI429285431	5.376239	P	4.4297132	P	1.92722605067562	0	lncRNA	54536-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00006027 range=chr12:132906471-132912612 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006027 range=chr12:132906471-132912612 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	132906471	132909470	+	NA	NA	NA	NA	GALNT9	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90chr12:132896471-132905905"	NA	inter
CUST_22107_PI429285431	0.9029753	A	0.9103855	A	0.994876809299963	0	lncRNA	23712-2_{3001..3458}	lnc-RNF5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF5-1:1	chr6	 32233389	 32233846	+	lnc-RNF5-1	lnc-RNF5-1:1	ENSG00000225914.1	XXbac-BPG154L12.4	NA	"hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10"	NA	inter
CUST_9274_PI429285431	1.3441732	A	0.91310585	A	1.34823067034404	0	lncRNA	10779-1_{1..243}	lnc-FAM5C-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM5C-3:1	chr1	191686588	191686830	-	lnc-FAM5C-3	lnc-FAM5C-3:1	XLOC_001131	linc-FAM5C-1	NA	NA	NA	inter
CUST_10148_PI429285431	2.6293583	A	4.1428356	P	0.350265961406278	0	lncRNA	11672-1_{1..543}	lnc-CCDC71L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC71L-1:2	chr7	106280206	106280748	-	lnc-CCDC71L-1	lnc-CCDC71L-1:2	XLOC_006555	linc-NAMPT	NA	NA	NA	inter
CUST_17884_PI429285431	1.7578199	A	2.2085228	A	0.731686273939396	0	lncRNA	19619-3_{6001..9000}	lnc-OIP5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OIP5-1:1	chr15	 41594773	 41597772	-	lnc-OIP5-1	lnc-OIP5-1:1	XLOC_011448	linc-EXD1	OIP5	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.91;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70chr15:41601466-41608741"	NA	inter
LNCA_21_P0012535	3.0533333	P	3.0527616	P	1.00039635076934	0	lncRNA	ENST00000426218	NA	NA	NA	NA	XLOC_l2_010127	NA	ENST00000426218	THC2743875	NA	"BROAD Institute lincRNA (XLOC_l2_010127), lincRNA [TCONS_l2_00020088]"	chr3:16729584-16729525	hs|3p24.3	Agilent_HUMAN_G3V2	ENST00000426218	ENST00000426218	chr3	 16729525	 16729584	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27250_PI429285431	0.8949951	A	0.90537316	A	0.992832288429244	0	lncRNA	28800-1_{1..552}	n324393|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316065|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316065|-1.2461400|-0.4754718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324393|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316065|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316065|-1.2461400|-0.4754718	chr6	132447916	132448467	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4665_PI429285431	1.1206708	A	0.90913844	A	1.15791741413075	0	lncRNA	4611-1_{1..344}	"transcript_id ""ENST00000422074.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422074.2"" | genecode_v17"	chr13	 88453291	 88453634	-	ENSG00000223404.2	ENST00000422074.2	RP11-471M2.2	RP11-471M2.2-001	NA	NA	NA	inter
CUST_8623_PI429285431	11.526699	P	11.78591	P	0.835544748177527	0	lncRNA	10176-1_{1..471}	lnc-TTLL7-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TTLL7-2:4	chr1	 84326502	 84326972	-	lnc-TTLL7-2	lnc-TTLL7-2:4	ENSG00000233008	RP11-475O6.1	TTLL7	NA	chr1:84335057-84336626	inter
LNCA_21_P0002287	0.88603294	A	0.8873511	A	0.999086738389932	0	lncRNA	TCONS_00003848	NA	NA	NA	NA	XLOC_001653	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001653), lincRNA [TCONS_00003848]"	chr2:123804926-123804985	hs|2q14.3	Agilent_HUMAN_G3V2	TCONS_00003848	TCONS_00003848	chr2	123804926	123804985	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28059_PI429285431	8.976655	P	8.964957	P	1.00814139811401	0	lncRNA	29677-1_{1..786}	n325325|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326018|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326018|0.0657468|-0.3162649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325325|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326018|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326018|0.0657468|-0.3162649	chr2	 43113875	 43114660	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0,hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-30.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.01;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20"	NA	inter
CUST_27984_PI429285431	6.9886103	P	6.6659565	P	1.25062893373593	0	lncRNA	29589-1_{1..1711}	n325234|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329846|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329846|-0.0486803|-0.2198882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325234|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329846|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329846|-0.0486803|-0.2198882	chr2	 85895763	 85897473	+	NA	NA	NA	NA	GNLY	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50chr2:85913059-85916025"	NA	inner
CUST_15226_PI429285431	1.5384377	A	0.9512878	A	1.50227600945931	0	lncRNA	16896-1_{1..581}	lnc-UNC5C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UNC5C-1:1	chr4	 95678545	 95679125	-	lnc-UNC5C-1	lnc-UNC5C-1:1	XLOC_004019	linc-HPGDS	BMPR1B	NA	chr4:95679128-95689011	inter
CUST_263_PI429201921	6.16922	P	6.4401836	P	0.828765814447636	0	lncRNA	193-1_{1..3000}	TC19002515.hg.1	TCONS_l2_00013151-XLOC_l2_007074 // Broad TUCP // linc-EXOC3L2 chr19:-:45742029-45748605 // chr19 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr19:-:45742029-45748605	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00013151-XLOC_l2_007074	linc-EXOC3L2	chr19	 45742029	 45748605	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16943_PI429285431	2.8340719	A	3.3688126	P	0.69028273217997	0	lncRNA	18656-1_{1..218}	lnc-FRRS1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRRS1-2:1	chr1	 99895016	 99895233	-	lnc-FRRS1-2	lnc-FRRS1-2:1	XLOC_000934	linc-LPPR5-1	NA	NA	NA	inter
CUST_14633_PI429285431	0.8998201	A	0.9169239	A	0.988214548213195	0	lncRNA	16304-1_{1..2735}	lnc-IRF8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRF8-1:1	chr16	 85982102	 85984836	+	lnc-IRF8-1	lnc-IRF8-1:1	XLOC_011809	linc-FOXF1-6	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40"	NA	inter
CUST_42789_PI429285431	3.8142743	P	4.044617	P	0.852432379617227	0	lncRNA	45780-1_{1..72}	ENST00000364968 ncrna:snoRNA chromosome:GRCh37:17:74557716:74557787:1 gene:ENSG00000201838 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364968 ncrna:snoRNA chromosome:GRCh37:17:74557716:74557787:1 gene:ENSG00000201838 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 74557716	 74557787	+	ENSG00000201838	ENST00000364968	NA	NA	ST6GALNAC2	NA	chr17:74561461-74567787	inter
CUST_46807_PI429285431	0.90204257	A	1.6280906	A	0.604557710731534	0	lncRNA	50952-1_{1..817}	"gi|253314454|ref|NR_027996.1| Homo sapiens RAD52 motif 1 (RDM1), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|253314454|ref|NR_027996.1| Homo sapiens RAD52 motif 1 (RDM1), transcript variant 9, non-coding RNA"	Chr17	 34245084	 34245900	-	201299	NR_027996.1	NA	NA	NA	NA	NA	inter
CUST_45010_PI429285431	6.297846	P	5.7457294	P	1.46623525494332	0	lncRNA	49512-2_{3001..3088}	"gi|237649020|ref|NR_027662.1| Homo sapiens solute carrier family 25 (aspartate/glutamate carrier), member 13 (SLC25A13), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237649020|ref|NR_027662.1| Homo sapiens solute carrier family 25 (aspartate/glutamate carrier), member 13 (SLC25A13), transcript variant 3, non-coding RNA"	Chr7	 95752532	 95752619	-	10165	NR_027662.1	NA	NA	NA	NA	NA	inter
CUST_45778_PI429285431	0.9025724	A	0.9231525	A	0.985836225286622	0	lncRNA	50122-1_{1..682}	"gi|310120653|ref|XR_109076.1| PREDICTED: Homo sapiens uncharacterized LOC100506675, transcript variant 2 (LOC100506675), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120653|ref|XR_109076.1| PREDICTED: Homo sapiens uncharacterized LOC100506675, transcript variant 2 (LOC100506675), misc_RNA"	NA	NA	NA	NA	NA	XR_109076.1	NA	NA	NA	NA	NA	Unknown
CUST_24767_PI429285431	1.4495052	A	1.1226298	A	1.25429387132444	0	lncRNA	26311-1_{1..892}	lnc-SAP30-5:34	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:34	chr4	174503856	174504747	+	lnc-SAP30-5	lnc-SAP30-5:34	ENSG00000237125.3	RP11-471J12.1	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-32.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
CUST_10707_PI429285431	4.364087	P	5.27101	P	0.533321354261148	0	lncRNA	12243-1_{1..416}	lnc-LARGE-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LARGE-3:1	chr22	 34756103	 34756518	-	lnc-LARGE-3	lnc-LARGE-3:1	XLOC_014356	linc-LARGE-6	NA	NA	NA	inter
LNCA_21_P0005485	0.9075814	A	0.9264968	A	0.986974420617156	0	lncRNA	TCONS_00013750	NA	NA	NA	NA	XLOC_006389	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006389), lincRNA [TCONS_00013750]"	chr7:26657103-26657044	hs|7p15.2	Agilent_HUMAN_G3V2	TCONS_00013750	TCONS_00013750	chr7	 26657044	 26657103	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007744	1.76649	A	2.9167383	A	0.450547681571281	0	lncRNA	TCONS_00020886	NA	NA	NA	NA	XLOC_010163	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010163), lincRNA [TCONS_00020886]"	chr12:95775012-95774953	hs|12q22	Agilent_HUMAN_G3V2	TCONS_00020886	TCONS_00020886	chr12	 95774953	 95775012	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44444_PI429285431	7.6517634	P	5.550049	P	4.29219136709392	0	lncRNA	49053-2_{3001..3079}	"gi|307691205|ref|NR_036641.1| Homo sapiens platelet derived growth factor C (PDGFC), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|307691205|ref|NR_036641.1| Homo sapiens platelet derived growth factor C (PDGFC), transcript variant 2, non-coding RNA"	Chr4	157685763	157685841	-	56034	NR_036641.1	NA	NA	NA	NA	NA	inter
CUST_10247_PI429285431	2.242176	A	1.5771883	A	1.5855547551824	0	lncRNA	11773-1_{1..1979}	lnc-HAPLN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-HAPLN3-1:1	chr15	 89341887	 89343865	-	lnc-HAPLN3-1	lnc-HAPLN3-1:1	XLOC_011570	linc-DET1-2	ACAN	NA	chr15:89346674-89352033	inter
CUST_24289_PI429285431	0.9058564	A	0.9044466	A	1.00097767650956	0	lncRNA	25840-1_{1..946}	lnc-BTC-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BTC-2:2	chr4	 75894701	 75895646	-	lnc-BTC-2	lnc-BTC-2:2	ENSG00000249717.1	RP11-44F21.3	PARM1	NA	chr4:75884701-75905334	inner
CUST_30092_PI429285431	10.187256	P	10.101263	P	1.06141805890476	0	lncRNA	31864-1_{1..203}	n334629|U87167|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000222014|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000222014|1.3172900|-0.0571948	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334629|U87167|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000222014|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000222014|1.3172900|-0.0571948	chrX	152915114	152915316	+	NA	NA	NA	NA	DUSP9	NA	chrX:152907897-152916781	inner
CUST_46544_PI429285431	5.410694	P	5.634042	P	0.856575310845688	0	lncRNA	50729-1_{1..1197}	"gi|224465206|ref|NR_027076.1| Homo sapiens uncharacterized LOC283761 (LOC283761), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224465206|ref|NR_027076.1| Homo sapiens uncharacterized LOC283761 (LOC283761), transcript variant 3, non-coding RNA"	Chr15	 90048161	 90049357	-	283761	NR_027076.1	NA	NA	NA	NA	NA	inter
CUST_398_PI429201921	0.9036597	A	0.91943246	A	0.989126702215491	0	lncRNA	248-4_{9001..9649}	TC01005733.hg.1	 TCONS_l2_00001463-XLOC_l2_001066 // Broad TUCP // linc-IGSF3-1 chr1:-:117315571-117325219 // chr1 // 100 // 100 // 0 // --- // 0///TCONS_l2_00001462-XLOC_l2_001066 // Broad TUCP // linc-IGSF3-1 chr1:-:117315569-117319121 // chr1 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:117315569-117319121	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00001462-XLOC_l2_001066	linc-IGSF3-1	chr1	117315569	117319121	-	NA	NA	NA	NA	NFIA	NA	chr1:61704668-61729182	Unknown
CUST_18275_PI429285431	4.7806034	P	3.9631498	P	1.76229274637119	0	lncRNA	20007-1_{1..3000}	lnc-NKAIN3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKAIN3-3:1	chr8	 64122241	 64125240	+	lnc-NKAIN3-3	lnc-NKAIN3-3:1	ENSG00000185728	YTHDF3	YTHDF3	NA	chr8:64112241-64125346	inner
CUST_49212_PI429285431	0.9120243	A	1.622976	A	0.610917003390128	0	lncRNA	53031-1_{1..595}	hg19_lincRNAsTranscripts_TCONS_l2_00020896 range=chr4:174990969-175001205 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020896 range=chr4:174990969-175001205 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	174990969	174991563	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25785_PI429285431	0.8970383	A	0.9006627	A	0.997490910399369	0	lncRNA	27307-1_{1..390}	lnc-LRRC7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC7-2:1	chr1	 70617431	 70617820	+	lnc-LRRC7-2	lnc-LRRC7-2:1	ENSG00000231835.1	RP4-677H15.2	LRRC40	NA	chr1:70610485-70627628	inner
CUST_47171_PI429285431	2.5162036	A	2.6531863	A	0.909419156986264	0	lncRNA	51248-1_{1..2879}	"gi|368711265|ref|NR_045762.1| Homo sapiens kallikrein-related peptidase 2 (KLK2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|368711265|ref|NR_045762.1| Homo sapiens kallikrein-related peptidase 2 (KLK2), transcript variant 4, non-coding RNA"	Chr19	 51376689	 51379567	+	3817	NR_045762.1	NA	NA	NA	NA	NA	inter
CUST_12380_PI429285431	0.9038952	A	1.4517524	A	0.684035355389516	0	lncRNA	13993-1_{1..419}	lnc-AIMP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AIMP1-1:2	chr4	107370168	107370586	+	lnc-AIMP1-1	lnc-AIMP1-1:2	XLOC_003636	linc-SGMS2-3	NA	NA	NA	inter
CUST_20650_PI429285431	4.6485853	P	5.0600567	P	0.751856166866469	0	lncRNA	22289-1_{1..623}	lnc-FAM151A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM151A-1:1	chr1	 55093831	 55094453	-	lnc-FAM151A-1	lnc-FAM151A-1:1	ENSG00000230728.1	RP11-240D10.4	ACOT11	NA	chr1:55083831-55100417	inner
CUST_6376_PI429285431	4.795709	P	5.149853	P	0.78233369061488	0	lncRNA	6302-1_{1..313}	"transcript_id ""ENST00000595116.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595116.1"" | genecode_v17"	chr19	 17614245	 17614557	-	ENSG00000269439.1	ENST00000595116.1	CTD-3131K8.2	CTD-3131K8.2-001	SLC27A1	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30chr19:17604245-17616977"	NA	inner
CUST_40514_PI429285431	7.793943	P	7.7117324	P	1.05863892031424	0	lncRNA	41279-1_{1..2702}	n409527|NR_033913|lncRNA|Homosapiens||RefGeneNoncode|NR_033913||2.5808100|-0.0987682	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409527|NR_033913|lncRNA|Homosapiens||RefGeneNoncode|NR_033913||2.5808100|-0.0987682	chr9	139640612	139643313	+	NA	NA	NA	NA	LCN6	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LCN6:range=chr9:139639114-1396429355'pad=0,hg19_refFlat_LCN6:range=chr9:139639114-1396429355'pad=0 3'pad=0 strand=- repeatMasking=none,-97.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10chr9:139638469-139642980"	NA	inter
CUST_32041_PI429285431	0.8854189	A	0.89107186	A	0.996089333365284	0	lncRNA	33755-2_{3001..6000}	n338602|AL832586|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1008|NULL|-0.0437929|-0.3678242	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338602|AL832586|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1008|NULL|-0.0437929|-0.3678242	chr13	 25738825	 25741824	-	NA	NA	NA	NA	FAM123A	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chr13:25742660-25745857"	NA	inter
CUST_14807_PI429285431	0.89711314	A	0.9110231	A	0.990404682123209	0	lncRNA	16468-1_{1..1028}	lnc-FOXG1-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXG1-6:2	chr14	 27133246	 27134273	+	lnc-FOXG1-6	lnc-FOXG1-6:2	XLOC_010776	linc-FOXG1-5	NA	NA	NA	inter
CUST_43335_PI429285431	1.1371635	A	1.2583288	A	0.919444692691161	0	lncRNA	48162-2_{3001..3390}	ENST00000594650 havana:sense_intronic chromosome:GRCh37:19:35113839:35117228:-1 gene:ENSG00000268687 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000594650 havana:sense_intronic chromosome:GRCh37:19:35113839:35117228:-1 gene:ENSG00000268687 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 35116839	 35117228	-	ENSG00000268687	ENST00000594650	NA	NA	NA	NA	NA	inter
LNCA_21_P0009609	0.88639057	A	2.051652	A	0.445883454085652	0	lncRNA	TCONS_00026627	NA	NA	NA	NA	XLOC_012689	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012689), lincRNA [TCONS_00026627]"	chr18:54702644-54702703	hs|18q21.31	Agilent_HUMAN_G3V2	TCONS_00026627	TCONS_00026627	chr18	 54702644	 54702703	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27746_PI429285431	3.6217709	P	3.6882677	P	0.954954036063369	0	lncRNA	29328-1_{1..733}	n324963|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079675|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079675|0.2662560|-0.2145348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324963|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079675|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079675|0.2662560|-0.2145348	chr20	 48213407	 48214139	+	NA	NA	NA	NA	LOC728671	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr20:48211006-48226046"	NA	inter
CUST_12056_PI429285431	1.1479748	A	0.88598096	A	1.19913479373047	0	lncRNA	13641-2_{3001..5934}	lnc-KCNA5-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNA5-3:2	chr12	  5634015	  5636948	+	lnc-KCNA5-3	lnc-KCNA5-3:2	XLOC_009628	linc-CD9-4	NA	NA	NA	inter
CUST_24848_PI429285431	3.551002	P	3.6202216	P	0.953153449878019	0	lncRNA	26388-1_{1..2851}	lnc-PIRT-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PIRT-3:1	chr17	 11196143	 11198993	-	lnc-PIRT-3	lnc-PIRT-3:1	ENSG00000263951.1	RP11-680C21.2	SHISA6	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.76;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10chr17:11186143-11208993"	NA	inner
CUST_34257_PI429285431	1.2268735	A	1.6612227	A	0.740027505886022	0	lncRNA	35759-1_{1..3000}	n341115|AB096240|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3581|NULL|-1.1941700|-0.3611030	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341115|AB096240|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3581|NULL|-1.1941700|-0.3611030	chr11	109294857	109297856	+	NA	NA	NA	NA	C11orf87	NA	chr11:109292846-109299893	inner
CUST_11994_PI429285431	3.9732466	P	4.2351127	P	0.834008446564723	0	lncRNA	13576-1_{1..3000}	lnc-C10orf136-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf136-1:13	chr10	 44475902	 44478901	+	lnc-C10orf136-1	lnc-C10orf136-1:13	XLOC_008473	linc-TMEM72-2	NA	NA	NA	inter
CUST_31209_PI429285431	2.1263535	A	1.3238554	A	1.74411854359168	0	lncRNA	33002-1_{1..1004}	n337654|BC043536|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|34|NULL|-0.3107590|-0.1505952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337654|BC043536|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|34|NULL|-0.3107590|-0.1505952	chrX	 39226538	 39227541	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014396	4.6192093	P	4.381833	P	1.17884684785197	0	lncRNA	XR_111844	XR_111844	XR_111844	NA	Hs.629249	LOC100132815	importin 5 pseudogene	NA	THC2499586	NA	"PREDICTED: Homo sapiens hypothetical LOC100132815 (LOC100132815), miscRNA [XR_111844]"	chr19:23438012-23437953	hs|19p12	Agilent_HUMAN_G3V2	XR_111844	XR_111844	chr19	 23437953	 23438012	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47980_PI429285431	1.0454339	A	1.2765477	A	0.851976888360239	0	lncRNA	51869-2_{3001..4084}	"gi|410172847|ref|XR_172020.1| PREDICTED: Homo sapiens uncharacterized LOC101060553 (LOC101060553), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172847|ref|XR_172020.1| PREDICTED: Homo sapiens uncharacterized LOC101060553 (LOC101060553), misc_RNA"	NA	NA	NA	NA	NA	XR_172020.1	NA	NA	NA	NA	NA	Unknown
CUST_6319_PI429285431	10.475433	P	11.041088	P	0.675648594702437	0	lncRNA	6242-1_{1..2103}	"transcript_id ""ENST00000586154.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586154.1"" | genecode_v17"	chr19	  6210390	  6212492	-	ENSG00000267427.1	ENST00000586154.1	CTC-503J8.6	CTC-503J8.6-001	MLLT1	NA	chr19:6210392-6222492	inner
CUST_49332_PI429285431	2.544944	A	3.111388	A	0.675279188152924	0	lncRNA	53145-1_{1..733}	hg19_lincRNAsTranscripts_TCONS_l2_00022346 range=chr5:67089000-67101085 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022346 range=chr5:67089000-67101085 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 67089000	 67089732	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14207_PI429285431	2.9276695	A	2.410384	A	1.43125972902526	0	lncRNA	15859-1_{1..1912}	lnc-RAB1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB1A-1:1	chr2	 65283049	 65284960	-	lnc-RAB1A-1	lnc-RAB1A-1:1	XLOC_002133	linc-SERTAD2-4	CEP68	NA	chr2:65283495-65293317	inter
CUST_2486_PI429285431	3.2720609	P	3.5310795	P	0.83565618512365	0	lncRNA	2478-1_{1..1017}	"transcript_id ""ENST00000437648.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437648.1"" | genecode_v17"	chr6	 14977019	 14978035	-	ENSG00000234261.1	ENST00000437648.1	RP11-146I2.1	RP11-146I2.1-001	NA	NA	NA	inter
CUST_43997_PI429285431	1.9531951	A	3.649568	P	0.308560886268554	0	lncRNA	48692-3_{6001..6352}	"gi|365733614|ref|NR_045682.1| Homo sapiens myosin IIIB (MYO3B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|365733614|ref|NR_045682.1| Homo sapiens myosin IIIB (MYO3B), transcript variant 3, non-coding RNA"	Chr2	171040655	171041006	+	140469	NR_045682.1	NA	NA	NA	"hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40"	NA	inter
CUST_28275_PI429285431	0.89130324	A	0.89805245	A	0.995332729831667	0	lncRNA	29910-1_{1..1773}	n325569|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000130382|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000130382|-1.0772400|-0.3607324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325569|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000130382|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000130382|-1.0772400|-0.3607324	chr17	 15111502	 15113274	-	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-62.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
CUST_4016_PI429285431	2.1645021	A	2.360296	A	0.873092310126633	0	lncRNA	3977-1_{1..388}	"transcript_id ""ENST00000531538.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531538.1"" | genecode_v17"	chr11	 75922000	 75922387	-	ENSG00000255362.1	ENST00000531538.1	RP11-619A14.3	RP11-619A14.3-001	WNT11	NA	chr11:75912000-75917574	inter
CUST_28183_PI429285431	0.8842287	A	0.8888714	A	0.996787098036353	0	lncRNA	29810-1_{1..1746}	n325463|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322561|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322561|-1.0542100|-0.3212090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325463|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322561|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322561|-1.0542100|-0.3212090	chr2	  5784031	  5785776	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51698_PI429285431	1.637173	A	1.7122881	A	0.94926638427969	0	lncRNA	55258-1_{1..400}	hg19_lincRNAsTranscripts_TCONS_l2_00011955 range=chr18:10979248-11148563 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011955 range=chr18:10979248-11148563 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 10979248	 10979647	-	NA	NA	NA	NA	FAM38B	NA	chr18:10969248-11148761	inner
CUST_7143_PI429285431	11.08569	P	11.10322	P	0.987922653652862	0	lncRNA	7079-1_{1..3000}	"transcript_id ""ENST00000440408.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000440408.1"" | genecode_v17"	chrY	 14774265	 14777264	+	ENSG00000233864.3	ENST00000440408.1	TTTY15	TTTY15-001	USP9Y	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80chrY:14813160-14814162"	NA	inter
CUST_21077_PI429285431	9.824284	P	10.137398	P	0.804902532693151	0	lncRNA	22703-1_{1..391}	lnc-FKBP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FKBP2-1:1	chr11	 64015425	 64015815	+	lnc-FKBP2-1	lnc-FKBP2-1:1	ENSG00000256940.1	RP11-783K16.5	PLCB3	NA	chr11:64018995-64025689	inter
CUST_14221_PI429285431	1.9558941	A	1.7446437	A	1.15769113312007	0	lncRNA	15877-1_{1..672}	lnc-ACOT9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACOT9-1:1	chrX	 23801002	 23801673	-	lnc-ACOT9-1	lnc-ACOT9-1:1	XLOC_008133	linc-ACOT9-1	SAT1	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-19.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90chrX:23801275-23804327"	NA	inter
CUST_41763_PI429285431	6.209106	P	6.2803993	P	0.951784390995671	0	lncRNA	43323-1_{1..82}	ENST00000410788 ncrna:miRNA chromosome:GRCh37:19:1556604:1556685:1 gene:ENSG00000222720 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410788 ncrna:miRNA chromosome:GRCh37:19:1556604:1556685:1 gene:ENSG00000222720 gene_biotype:miRNA transcript_biotype:miRNA	chr19	  1556604	  1556685	+	ENSG00000222720	ENST00000410788	NA	NA	MEX3D	"hg19_refFlat_MEX3D:range=chr19:1555330-15680575'pad=0,hg19_refFlat_MEX3D:range=chr19:1555330-15680575'pad=0 3'pad=0 strand=- repeatMasking=none,-105.90;hg19_refFlat_MEX3D:range=chr19:1555562-15680575'pad=0,hg19_refFlat_MEX3D:range=chr19:1555562-15680575'pad=0 3'pad=0 strand=- repeatMasking=none,-105.90;hg19_refFlat_MEX3A:range=chr1:156046365-1560517895'pad=0,hg19_refFlat_MEX3A:range=chr1:156046365-1560517895'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_MEX3B:range=chr15:82335501-823380465'pad=0,hg19_refFlat_MEX3B:range=chr15:82335501-823380465'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr19:1554668-1566685"	NA	inner
CUST_10948_PI429285431	2.747892	A	1.4646523	A	2.43384906131971	0	lncRNA	12489-1_{1..1550}	lnc-THBS1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THBS1-1:2	chr15	 39784717	 39786266	+	lnc-THBS1-1	lnc-THBS1-1:2	XLOC_011217	linc-THBS1-1	NA	NA	NA	inter
CUST_11147_PI429285431	5.9214325	P	5.5979323	P	1.25136286770672	0	lncRNA	12705-1_{1..3000}	lnc-HAO1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HAO1-2:1	chr20	  7238745	  7241744	-	lnc-HAO1-2	lnc-HAO1-2:1	XLOC_013647	linc-FERMT1-3	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60"	NA	inter
CUST_37556_PI429285431	2.8491454	A	3.1517985	P	0.810760045937376	0	lncRNA	38660-1_{1..3000}	n346032|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1582|NULL|-1.3378400|-0.3890786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,lncrnadb20130808,NONCODERv3,"	>n346032|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1582|NULL|-1.3378400|-0.3890786	chr7	 96594574	 96597573	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30"	NA	inter
LNCA_21_P0012398	10.706656	P	10.390703	P	1.24483368063265	0	lncRNA	TCONS_l2_00018862	NA	NA	NA	NA	XLOC_l2_009888	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009888), lincRNA [TCONS_l2_00018862]"	chr3:130547069-130547128	hs|3q22.1	Agilent_HUMAN_G3V2	TCONS_l2_00018862	TCONS_l2_00018862	chr3	130547069	130547128	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41037_PI429285431	4.488829	P	5.043598	P	0.680766051740676	0	lncRNA	41697-1_{1..3000}	n411704|NR_044995|lncRNA|Homosapiens||RefGeneNoncode|NR_044995||4.0430600|-0.1918684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411704|NR_044995|lncRNA|Homosapiens||RefGeneNoncode|NR_044995||4.0430600|-0.1918684	chr13	114545292	114548291	+	NA	NA	NA	NA	GAS6	NA	chr13:114535292-114558719	inner
LNCA_21_P0008964	0.8894546	A	0.8896012	A	0.999898389785997	0	lncRNA	TCONS_00024446	NA	NA	NA	NA	XLOC_011769	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011769), lincRNA [TCONS_00024446]"	chr16:68756468-68761063	hs|16q22.1	Agilent_HUMAN_G3V2	TCONS_00024446	TCONS_00024446	chr16	 68756468	 68761063	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1343_PI429285431	1.2444054	A	0.91010237	A	1.26076818105692	0	lncRNA	1332-1_{1..670}	"transcript_id ""ENST00000453828.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453828.1"" | genecode_v17"	chr3	 41012032	 41012701	-	ENSG00000233096.1	ENST00000453828.1	RP11-520A21.1	RP11-520A21.1-001	NA	NA	NA	inter
CUST_22820_PI429285431	4.905818	P	4.8941703	P	1.00810624957125	0	lncRNA	24400-1_{1..2854}	lnc-RSPH1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RSPH1-3:1	chr21	 44070674	 44073527	-	lnc-RSPH1-3	lnc-RSPH1-3:1	ENSG00000235023.1	AP001626.2	PDE9A	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-24.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40chr21:44073862-44081354"	NA	inter
CUST_28423_PI429285431	0.9018002	A	0.9088566	A	0.995120818302961	0	lncRNA	30083-1_{1..3000}	n325746|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044729|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044729|-1.2228700|-0.3614361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325746|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044729|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044729|-1.2228700|-0.3614361	chr13	 43497454	 43500453	+	NA	NA	NA	NA	EPSTI1	"hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_EPSTI1:range=chr13:43462386-435663015'pad=0,hg19_refFlat_EPSTI1:range=chr13:43462386-435663015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_EPSTI1:range=chr13:43462630-435663015'pad=0,hg19_refFlat_EPSTI1:range=chr13:43462630-435663015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90chr13:43487454-43512073"	NA	inner
LNCA_21_P0007374	0.8901588	A	0.89062244	A	0.999678680875256	0	lncRNA	AK054718	NA	AK054718	NA	Hs.523913	XLOC_009507	NA	NA	THC2498239	NA	"BROAD Institute lincRNA (XLOC_009507), lincRNA [TCONS_00019712]"	chr11:76154409-76154350	hs|11q13.5	Agilent_HUMAN_G3V2	AK054718	AK054718	chr11	 76154350	 76154409	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7744_PI429285431	6.564572	P	6.8317075	P	0.830967812232468	0	lncRNA	9372-1_{1..568}	lnc-UBLCP1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-UBLCP1-5:2	chr5	158533875	158534442	+	lnc-UBLCP1-5	lnc-UBLCP1-5:2	ENSG00000245812	RP11-175K6.1	EBF1	NA	chr5:158523875-158526788	inter
CUST_38288_PI429285431	1.9774375	A	2.5709429	A	0.662730673932356	0	lncRNA	39342-1_{1..748}	n381926|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001thg.1||-0.3694660|-0.2865281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381926|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001thg.1||-0.3694660|-0.2865281	chr12	100597446	100598193	-	NA	NA	NA	NA	ACTR6	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.46;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40chr12:100594574-100618201"	NA	inter
LNCA_21_P0002445	5.283185	P	5.602138	P	0.801651445108625	0	lncRNA	TCONS_00004267	NA	NA	NA	NA	XLOC_002109	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002109), lincRNA [TCONS_00004267]"	chr2:60666723-60666538	hs|2p16.1	Agilent_HUMAN_G3V2	TCONS_00004267	TCONS_00004267	chr2	 60666538	 60666723	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_784_PI429285431	3.945717	P	4.335761	P	0.763106330545306	0	lncRNA	777-1_{1..1949}	"transcript_id ""ENST00000424895.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424895.1"" | genecode_v17"	chr2	 19167729	 19169677	-	ENSG00000236204.1	ENST00000424895.1	AC092594.1	AC092594.1-001	NA	NA	NA	inter
CUST_18330_PI429285431	0.8827479	A	1.8133515	A	0.524638795599428	0	lncRNA	20059-1_{1..563}	lnc-NKX2-4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKX2-4-1:2	chr20	 21198785	 21199347	-	lnc-NKX2-4-1	lnc-NKX2-4-1:2	ENSG00000232712	RP4-777D9.2	PLK1S1	NA	chr20:21188785-21208903	inner
CUST_22439_PI429285431	5.285011	P	5.6784124	P	0.761332515384656	0	lncRNA	24028-1_{1..3000}	lnc-SNURF-3:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SNURF-3:18	chr15	 25618669	 25621668	+	lnc-SNURF-3	lnc-SNURF-3:18	ENSG00000224078.4	SNHG14	SNRPN	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30chr15:25608669-25630623"	NA	inner
LNCA_21_P0011946	1.132723	A	0.8874914	A	1.1852830325767	0	lncRNA	TCONS_l2_00014779	NA	NA	NA	NA	XLOC_l2_008200	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008200), lincRNA [TCONS_l2_00014779]"	chr2:111143849-111143790	hs|2q13	Agilent_HUMAN_G3V2	TCONS_l2_00014779	TCONS_l2_00014779	chr2	111143790	111143849	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001597	0.89365643	A	0.9184192	A	0.982982222238723	0	lncRNA	THC2698316	NA	NA	NA	NA	XLOC_001110	NA	NA	THC2698316	NA	"BROAD Institute lincRNA (XLOC_001110), lincRNA [TCONS_00001737]"	chr1:180121776-180121717	hs|1q25.2	Agilent_HUMAN_G3V2	THC2698316	THC2698316	chr1	180121717	180121776	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47344_PI429285431	10.224453	P	10.7746105	P	0.682945566674739	0	lncRNA	51396-2_{3001..5234}	"gi|237681206|ref|NR_027687.1| Homo sapiens long intergenic non-protein coding RNA 176 (LINC00176), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|237681206|ref|NR_027687.1| Homo sapiens long intergenic non-protein coding RNA 176 (LINC00176), transcript variant 2, non-coding RNA"	Chr20	 62668697	 62670930	+	284739	NR_027687.1	NA	NA	NA	NA	NA	inter
CUST_32535_PI429285431	0.90952444	A	0.920809	A	0.992208650203331	0	lncRNA	34201-1_{1..2144}	n339145|AL390134|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1575|NULL|2.5597900|-0.1507641	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339145|AL390134|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1575|NULL|2.5597900|-0.1507641	chr16	 28333039	 28335182	+	NA	NA	NA	NA	SBK1	NA	chr16:28323039-28335170	inner
CUST_49134_PI429285431	0.90491253	A	1.377247	A	0.720797308917132	0	lncRNA	52960-1_{1..324}	hg19_lincRNAsTranscripts_TCONS_l2_00020647 range=chr4:90602776-90605859 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020647 range=chr4:90602776-90605859 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 90602776	 90603099	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36461_PI429285431	0.92394197	A	0.9544445	A	0.979079198216034	0	lncRNA	37671-1_{1..3000}	n344971|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_520|NULL|-1.3089600|-0.3202065	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344971|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_520|NULL|-1.3089600|-0.3202065	chr7	126986883	126989882	-	NA	NA	NA	NA	ZNF800	NA	chr7:127010353-127019008	inter
CUST_20484_PI429285431	3.1309476	P	3.4562097	P	0.798153369567856	0	lncRNA	22127-1_{1..484}	lnc-FAM82A1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM82A1-2:2	chr2	 38358653	 38359136	+	lnc-FAM82A1-2	lnc-FAM82A1-2:2	ENSG00000232973.3	CYP1B1-AS1	NA	NA	NA	inter
CUST_45791_PI429285431	0.892398	A	0.90443194	A	0.991693400464763	0	lncRNA	50131-1_{1..1271}	"gi|222080079|ref|NR_026681.1| Homo sapiens uncharacterized LOC221122 (LOC221122), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|222080079|ref|NR_026681.1| Homo sapiens uncharacterized LOC221122 (LOC221122), non-coding RNA"	Chr11	 44995453	 44996723	+	221122	NR_026681.1	NA	NA	NA	NA	NA	inter
CUST_31874_PI429285431	1.3982867	A	1.1443516	A	1.19245522822508	0	lncRNA	33606-1_{1..2345}	n338427|BC043219|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|824|NULL|-0.9825670|-0.3806604	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338427|BC043219|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|824|NULL|-0.9825670|-0.3806604	chr1	188187530	188189874	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25285_PI429285431	4.586312	P	4.6927533	P	0.928876500612121	0	lncRNA	26816-1_{1..533}	lnc-ABHD16B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ABHD16B-1:1	chr20	 62447706	 62448238	+	lnc-ABHD16B-1	lnc-ABHD16B-1:1	ENSG00000231208.2	RP4-583P15.11	NA	"hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40"	NA	inter
CUST_12999_PI429285431	1.7936391	A	2.1823328	A	0.763820899331346	0	lncRNA	14626-1_{1..219}	lnc-NLGN1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NLGN1-1:2	chr3	174455431	174455649	+	lnc-NLGN1-1	lnc-NLGN1-1:2	XLOC_002925	linc-NAALADL2	NA	NA	NA	inter
CUST_13942_PI429285431	0.8982302	A	0.8975778	A	1.0004523114826	0	lncRNA	15589-1_{1..674}	lnc-SLC38A2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC38A2-1:3	chr12	 46888055	 46888728	-	lnc-SLC38A2-1	lnc-SLC38A2-1:3	XLOC_010061	linc-SLC38A2	NA	NA	NA	inter
CUST_12242_PI429285431	6.0167637	P	5.1145277	P	1.86896039841453	0	lncRNA	13846-3_{6001..6098}	lnc-NAP1L2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAP1L2-1:3	chrX	 73076337	 73076434	-	lnc-NAP1L2-1	lnc-NAP1L2-1:3	XLOC_008185	linc-NAP1L2-4	NA	NA	NA	inter
CUST_46779_PI429285431	5.5255165	P	6.4783964	P	0.516600197456519	0	lncRNA	50926-1_{1..790}	"gi|341915791|ref|XR_109373.2| PREDICTED: Homo sapiens uncharacterized LOC388436 (LOC388436), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915791|ref|XR_109373.2| PREDICTED: Homo sapiens uncharacterized LOC388436 (LOC388436), misc_RNA"	NA	NA	NA	NA	NA	XR_109373.2	NA	NA	NA	"hg19_refFlat_GRAPL:range=chr17:19030933-190616895'pad=0,hg19_refFlat_GRAPL:range=chr17:19030933-190616895'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60"	NA	Unknown
CUST_15685_PI429285431	0.92406714	A	0.9802422	A	0.9618107392127	0	lncRNA	17372-1_{1..496}	lnc-FAM105B-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM105B-3:3	chr5	 14992843	 14993338	+	lnc-FAM105B-3	lnc-FAM105B-3:3	XLOC_004300	linc-FBXL7-1	NA	NA	NA	inter
CUST_38818_PI429285431	8.141542	P	6.5047703	P	3.10969200982124	0	lncRNA	39811-1_{1..2080}	n384600|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jev.1||-0.1938210|-0.4434003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384600|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jev.1||-0.1938210|-0.4434003	chr5	 10435881	 10437960	+	NA	NA	NA	NA	6-Mar	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50chr5:10425881-10435491"	NA	inner
CUST_45426_PI429285431	1.2631347	A	1.1234578	A	1.10165836540695	0	lncRNA	49847-1_{1..3000}	"gi|283806708|ref|NR_033234.1| Homo sapiens spermatid perinuclear RNA binding protein (STRBP), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|283806708|ref|NR_033234.1| Homo sapiens spermatid perinuclear RNA binding protein (STRBP), transcript variant 3, non-coding RNA"	Chr9	125883899	125886898	-	55342	NR_033234.1	NA	NA	NA	NA	NA	inter
CUST_32936_PI429285431	0.91005754	A	2.889729	A	0.253547602900726	0	lncRNA	34557-1_{1..2340}	n339608|AK091765|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2052|NULL|-0.5447510|-0.1432439	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339608|AK091765|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2052|NULL|-0.5447510|-0.1432439	chr20	 23168597	 23170936	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009765	0.90693986	A	1.1466728	A	0.846902069492651	0	lncRNA	TCONS_00027311	NA	NA	NA	NA	XLOC_013309	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013309), lincRNA [TCONS_00027311]"	chr19:35381445-35381386	hs|19q13.11	Agilent_HUMAN_G3V2	TCONS_00027311	TCONS_00027311	chr19	 35381386	 35381445	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2257_PI429285431	1.7271988	A	1.9680201	A	0.846263412865728	0	lncRNA	2249-1_{1..2957}	"transcript_id ""ENST00000502934.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502934.1"" | genecode_v17"	chr5	 91495354	 91498310	+	ENSG00000250049.1	ENST00000502934.1	RP11-348J24.2	RP11-348J24.2-002	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70"	NA	inter
CUST_30034_PI429285431	3.461619	P	3.823317	P	0.77824807052316	0	lncRNA	31803-1_{1..267}	n334510|U32472|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219226|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219226|0.5369290|-0.0964819	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334510|U32472|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219226|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219226|0.5369290|-0.0964819	chr10	 75577290	 75577556	-	NA	NA	NA	NA	CAMK2G	NA	chr10:75572259-75595119	inner
CUST_18761_PI429285431	3.848251	P	3.773037	P	1.05351729626956	0	lncRNA	20457-1_{1..280}	lnc-TPTE2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TPTE2-2:1	chr13	 19979154	 19979433	-	lnc-TPTE2-2	lnc-TPTE2-2:1	ENSG00000230057	RP11-385E5.7	NA	NA	NA	inter
LNCA_21_P0013710	2.1458156	A	3.2333908	P	0.470551586768056	0	lncRNA	TCONS_l2_00029865	NA	NA	NA	NA	XLOC_l2_015037	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015037), lincRNA [TCONS_l2_00029865]"	chr9:132264329-132264388	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_l2_00029865	TCONS_l2_00029865	chr9	132264329	132264388	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00330076	6.477617	P	6.738633	P	0.834500026202644	0	lncRNA	TCONS_00029158	NA	NA	NA	NA	XLOC_014102	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014102), lincRNA [TCONS_00029158]"	chr21:44780474-44780415	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029158	TCONS_00029158	chr21	 44780415	 44780474	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_265_PI429285431	1.8367165	A	2.7006469	A	0.549453615463872	0	lncRNA	257-1_{1..1098}	"transcript_id ""ENST00000455304.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455304.2"" | genecode_v17"	chr1	 63655660	 63656757	-	ENSG00000224209.2	ENST00000455304.2	LINC00466	LINC00466-001	FOXD3	NA	chr1:63788730-63790797	inter
CUST_28453_PI429285431	13.115996	P	13.265297	P	0.901687233164889	0	lncRNA	30113-1_{1..1589}	n325780|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000125966|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000125966|-0.9183640|-0.2942376	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325780|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000125966|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000125966|-0.9183640|-0.2942376	chr13	 29812406	 29813994	-	NA	NA	NA	NA	MTUS2	"hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0,hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60chr13:29802406-29856036"	NA	inner
CUST_14259_PI429285431	2.6974614	A	1.8424504	A	1.8087725462711	0	lncRNA	15916-1_{1..465}	lnc-GADD45G-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GADD45G-5:1	chr9	 92749463	 92749927	+	lnc-GADD45G-5	lnc-GADD45G-5:1	XLOC_007451	linc-SYK-2	NA	NA	NA	inter
LNCA_21_P0009264	0.8915861	A	2.0840101	A	0.437567047441228	0	lncRNA	TCONS_00025464	NA	NA	NA	NA	XLOC_012281	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012281), lincRNA [TCONS_00025464]"	chr17:63115634-63115693	hs|17q24.1	Agilent_HUMAN_G3V2	TCONS_00025464	TCONS_00025464	chr17	 63115634	 63115693	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3920_PI429285431	0.8822318	A	0.8878436	A	0.996117752137551	0	lncRNA	3890-1_{1..431}	"transcript_id ""ENST00000526179.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526179.1"" | genecode_v17"	chr11	 41877896	 41878326	+	ENSG00000255279.1	ENST00000526179.1	RP11-375D13.4	RP11-375D13.4-001	NA	NA	NA	inter
CUST_20745_PI429285431	3.249488	P	3.4871094	P	0.848142509672428	0	lncRNA	22379-1_{1..371}	lnc-FOXI2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FOXI2-1:1	chr10	129734228	129734598	+	lnc-FOXI2-1	lnc-FOXI2-1:1	ENSG00000227076.1	RP11-4C20.4	PTPRE	NA	chr10:129724228-129744431	inner
CUST_35911_PI429285431	4.000234	P	4.1546955	P	0.898467672127914	0	lncRNA	37282-1_{1..1553}	n344557|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_105|NULL|-1.2721300|-0.3188696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344557|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_105|NULL|-1.2721300|-0.3188696	chr5	 92877577	 92879129	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34780_PI429285431	3.3763819	P	3.0334153	A	1.26836203498957	0	lncRNA	36217-1_{1..1593}	n341687|BC017766|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4158|NULL|-0.2203830|-0.3072914	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341687|BC017766|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4158|NULL|-0.2203830|-0.3072914	chr9	 37485958	 37487550	+	NA	NA	NA	NA	POLR1E	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30chr9:37485945-37503693"	NA	inner
CUST_47789_PI429285431	2.2569995	A	0.9096274	A	2.54448220187859	0	lncRNA	51710-2_{3001..4648}	"gi|346644734|ref|NR_045128.1| Homo sapiens taxilin gamma 2, pseudogene (TXLNG2P), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|346644734|ref|NR_045128.1| Homo sapiens taxilin gamma 2, pseudogene (TXLNG2P), transcript variant 1, non-coding RNA"	ChrY	 21732244	 21733891	+	246126	NR_045128.1	NA	NA	NA	NA	NA	inter
CUST_42597_PI429285431	1.0926403	A	0.954589	A	1.10041773781997	0	lncRNA	45450-1_{1..135}	ENST00000516664 ncrna:snoRNA chromosome:GRCh37:2:39510798:39510932:-1 gene:ENSG00000252473 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516664 ncrna:snoRNA chromosome:GRCh37:2:39510798:39510932:-1 gene:ENSG00000252473 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 39510798	 39510932	-	ENSG00000252473	ENST00000516664	NA	NA	MAP4K3	NA	chr2:39500798-39520932	inner
CUST_17779_PI429285431	0.9010124	A	0.9047009	A	0.997446592130342	0	lncRNA	19511-1_{1..302}	lnc-TMEM135-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM135-2:3	chr11	 87612841	 87613142	+	lnc-TMEM135-2	lnc-TMEM135-2:3	XLOC_009243	linc-TYR-4	NA	NA	NA	inter
CUST_50027_PI429285431	4.288503	P	3.2160742	P	2.10297077344666	0	lncRNA	53765-1_{1..280}	hg19_lincRNAsTranscripts_TCONS_l2_00027629 range=chr8:12245839-12250990 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027629 range=chr8:12245839-12250990 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 12245839	 12246118	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50757_PI429285431	3.6065612	P	3.6334455	P	0.981537777208676	0	lncRNA	54421-1_{1..616}	hg19_lincRNAsTranscripts_TCONS_l2_00004707 range=chr11:88071678-88144154 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004707 range=chr11:88071678-88144154 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 88071678	 88072293	+	NA	NA	NA	NA	CTSC	NA	chr11:88061678-88070941	inter
CUST_7293_PI429285431	2.9433742	A	3.6107757	P	0.6296397377355	0	lncRNA	8285-1_{1..295}	"transcript_id ""ENST00000517244.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517244.1"" | genecode_v17"	chr12	 54209969	 54210263	+	ENSG00000253053.1	ENST00000517244.1	RN7SKP289	RN7SKP289-201	NA	NA	NA	inter
CUST_4947_PI429285431	5.2929344	P	4.9702983	P	1.25061359023248	0	lncRNA	4891-1_{1..425}	"transcript_id ""ENST00000553496.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553496.1"" | genecode_v17"	chr14	 88511072	 88511496	+	ENSG00000258867.1	ENST00000553496.1	RP11-300J18.3	RP11-300J18.3-007	NA	NA	NA	inter
CUST_27_PI429285431	5.3417134	P	5.8174496	P	0.719099743391646	0	lncRNA	26-1_{1..616}	"transcript_id ""ENST00000524284.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,"	">transcript_id ""ENST00000524284.1"" | genecode_v17"	chr8	 65289890	 65290505	+	ENSG00000254377.1	ENST00000524284.1	RP11-32K4.2	RP11-32K4.2-003	NA	NA	NA	inter
LNCA_19_P00318954	4.1694994	P	4.8183107	P	0.63780561336357	0	lncRNA	TCONS_00025759	NA	NA	NA	NA	XLOC_012568	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012568), lincRNA [TCONS_00025759]"	chr17:70417082-70417023	hs|17q24.3	Agilent_HUMAN_G3V2	TCONS_00025759	TCONS_00025759	chr17	 70417023	 70417082	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7766_PI429285431	10.647776	P	11.312846	P	0.630658103951193	0	lncRNA	9393-1_{1..479}	lnc-TCF24-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TCF24-2:1	chr8	 67838433	 67838911	-	lnc-TCF24-2	lnc-TCF24-2:1	ENSG00000245910	SNHG6	C8orf45	NA	chr8:67828433-67834283	inter
CUST_12511_PI429285431	0.90061164	A	1.2896137	A	0.763657658565637	0	lncRNA	14122-1_{1..326}	lnc-ELTD1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELTD1-3:1	chr1	 79778966	 79779291	-	lnc-ELTD1-3	lnc-ELTD1-3:1	XLOC_000879	linc-ELTD1-1	NA	NA	NA	inter
CUST_11920_PI429285431	0.9049294	A	1.1348046	A	0.852708651941829	0	lncRNA	13501-1_{1..505}	lnc-C10orf108-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf108-3:1	chr10	   737257	   737761	+	lnc-C10orf108-3	lnc-C10orf108-3:1	XLOC_008334	linc-GTPBP4-4	DIP2C	NA	chr10:727257-735608	inter
LNCA_19_P00800681	0.882881	A	0.8939282	A	0.992371907172644	0	lncRNA	XR_110300	XR_110300	XR_110300	NA	Hs.592473	LOC100506965	uncharacterized LOC100506965	NA	THC2491895	NA	"PREDICTED: Homo sapiens hypothetical LOC100506965 (LOC100506965), miscRNA [XR_110300]"	chr15:25279378-25279437	hs|15q11.2	Agilent_HUMAN_G3V2	XR_110300	XR_110300	chr15	 25279378	 25279437	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5797_PI429285431	0.8829315	A	0.94957197	A	0.954858942220739	0	lncRNA	5720-1_{1..1553}	"transcript_id ""ENST00000579045.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579045.1"" | genecode_v17"	chr17	 26573480	 26575032	-	ENSG00000266830.1	ENST00000579045.1	CTD-2008P7.8	CTD-2008P7.8-001	NA	"hg19_refFlat_PPY:range=chr17:42018296-420190225'pad=0,hg19_refFlat_PPY:range=chr17:42018296-420190225'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40"	NA	inter
CUST_23736_PI429285431	0.91005385	A	1.6033221	A	0.618451235851039	0	lncRNA	25299-1_{1..110}	lnc-ANKRD56-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD56-2:1	chr4	 77723047	 77723156	-	lnc-ANKRD56-2	lnc-ANKRD56-2:1	ENSG00000224218.1	RP11-359D14.3	NA	NA	NA	inter
CUST_3000_PI429285431	1.5217167	A	2.1433625	A	0.649929077504602	0	lncRNA	2979-1_{1..807}	"transcript_id ""ENST00000518619.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518619.1"" | genecode_v17"	chr8	  9183618	  9184424	+	ENSG00000254235.1	ENST00000518619.1	RP11-115J16.1	RP11-115J16.1-004	NA	NA	NA	inter
CUST_33399_PI429285431	3.844949	P	6.1112585	P	0.207860927602396	0	lncRNA	34977-1_{1..2045}	n340120|AK025205|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2579|NULL|-1.0155900|-0.3048818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340120|AK025205|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2579|NULL|-1.0155900|-0.3048818	chr4	 75973295	 75975339	+	NA	NA	NA	NA	PARM1	NA	chr4:75963295-75975325	inner
LNCA_21_P0013300	6.832791	P	6.1806808	P	1.57146506482582	0	lncRNA	TCONS_l2_00026546	NA	NA	NA	NA	XLOC_l2_013808	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013808), lincRNA [TCONS_l2_00026546]"	chr7:45767918-45767859	hs|7p12.3	Agilent_HUMAN_G3V2	TCONS_l2_00026546	TCONS_l2_00026546	chr7	 45767859	 45767918	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014262	0.8844781	A	1.741986	A	0.55190509149073	0	lncRNA	XR_109039	XR_109039	XR_109039	NA	NA	LOC100507144	uncharacterized LOC100507144	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507144 (LOC100507144), miscRNA [XR_109039]"	chr11:35154256-35154197	hs|11p13	Agilent_HUMAN_G3V2	XR_109039	XR_109039	chr11	 35154197	 35154256	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24246_PI429285431	0.89339536	A	1.2016431	A	0.80762208060956	0	lncRNA	25797-1_{1..555}	lnc-TANC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TANC1-1:1	chr2	160260904	160261458	+	lnc-TANC1-1	lnc-TANC1-1:1	ENSG00000223642.1	AC008277.1	BAZ2B	"hg19_refFlat_BAZ2B:range=chr2:160176776-1603352305'pad=0,hg19_refFlat_BAZ2B:range=chr2:160176776-1603352305'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00chr2:160250904-160271143"	NA	inner
LNCA_21_P0008779	3.005195	P	2.5156264	A	1.40402497622675	0	lncRNA	TCONS_00023782	NA	NA	NA	NA	XLOC_011577	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011577), lincRNA [TCONS_00023782]"	chr15:91221775-91221716	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00023782	TCONS_00023782	chr15	 91221716	 91221775	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51144_PI429285431	0.88001716	A	0.88128406	A	0.999122237296208	0	lncRNA	54769-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00007752 range=chr14:60395000-60532322 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007752 range=chr14:60395000-60532322 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 60395000	 60397999	+	NA	NA	NA	NA	NA	"hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-27.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-28.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.21;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50"	NA	inter
CUST_22063_PI429285431	0.90941596	A	0.8956747	A	1.00957022008783	0	lncRNA	23669-1_{1..301}	lnc-KCNS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNS2-1:1	chr8	 99618382	 99618682	+	lnc-KCNS2-1	lnc-KCNS2-1:1	ENSG00000253911.1	KB-1205A7.2	STK3	NA	chr8:99608382-99628568	inner
CUST_29804_PI429285431	5.168766	P	5.509146	P	0.789833245601502	0	lncRNA	31567-1_{1..537}	n333513|BC038211|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000095133|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000095133|-0.8785550|-0.1407755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333513|BC038211|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000095133|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000095133|-0.8785550|-0.1407755	chr2	219231328	219231864	-	NA	NA	NA	NA	C2orf62	"hg19_refFlat_C2orf62:range=chr2:219221608-2192326875'pad=0,hg19_refFlat_C2orf62:range=chr2:219221608-2192326875'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.80chr2:219221328-219232817"	NA	inner
CUST_1362_PI429285431	0.9130552	A	0.90056604	A	1.00869440471921	0	lncRNA	1350-1_{1..550}	"transcript_id ""ENST00000465262.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000465262.1"" | genecode_v17"	chr3	 62936146	 62936695	+	ENSG00000244342.1	ENST00000465262.1	LINC00698	LINC00698-004	NA	NA	NA	inter
CUST_37241_PI429285431	3.233557	P	3.9238715	P	0.619718739787894	0	lncRNA	38348-1_{1..601}	n345672|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1221|NULL|-1.3131800|-0.1709997	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345672|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1221|NULL|-1.3131800|-0.1709997	chr3	129036666	129037266	+	NA	NA	NA	NA	H1FX	NA	chr3:129033614-129035120	inter
CUST_35259_PI429285431	0.9166626	A	1.2198714	A	0.810447815988496	0	lncRNA	36660-1_{1..1657}	n342265|AF254117|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4755|NULL|0.7253460|-0.3903396	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n342265|AF254117|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4755|NULL|0.7253460|-0.3903396	chr1	 64014650	 64016306	+	NA	NA	NA	NA	EFCAB7	NA	chr1:64004650-64026307	inner
CUST_7713_PI429285431	2.416717	A	3.2773747	A	0.55070144533139	0	lncRNA	9345-1_{1..2345}	lnc-DENR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DENR-1:1	chr12	123213422	123215766	+	lnc-DENR-1	lnc-DENR-1:1	ENSG00000250840	ENST00000502465	HCAR1	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_HCAR1:range=chr12:123213846-1232148865'pad=0,hg19_refFlat_HCAR1:range=chr12:123213846-1232148865'pad=0 3'pad=0 strand=- repeatMasking=none,-100.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60chr12:123212153-123215129"	NA	inner
CUST_42143_PI429285431	0.88629985	A	0.8924191	A	0.995767441745345	0	lncRNA	44166-1_{1..67}	ENST00000583613 ncrna:miRNA chromosome:GRCh37:6:73677410:73677476:-1 gene:ENSG00000266180 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583613 ncrna:miRNA chromosome:GRCh37:6:73677410:73677476:-1 gene:ENSG00000266180 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 73677410	 73677476	-	ENSG00000266180	ENST00000583613	NA	NA	KCNQ5	NA	chr6:73667410-73687476	inner
CUST_51687_PI429285431	4.1922936	P	4.4499927	P	0.836420832331897	0	lncRNA	55249-1_{1..1371}	hg19_lincRNAsTranscripts_TCONS_l2_00011482 range=chr17:76490008-76492293 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011482 range=chr17:76490008-76492293 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 76490008	 76491378	-	NA	NA	NA	NA	DNAH17	NA	chr17:76480008-76502293	inner
CUST_12803_PI429285431	0.91486996	A	0.92239124	A	0.994800211918969	0	lncRNA	14430-1_{1..1127}	lnc-C6orf70-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C6orf70-4:1	chr6	170347914	170349040	+	lnc-C6orf70-4	lnc-C6orf70-4:1	XLOC_005557	linc-FAM120B-8	NA	NA	NA	inter
CUST_50746_PI429285431	8.234883	P	8.119997	P	1.08288947354153	0	lncRNA	54414-1_{1..1188}	hg19_lincRNAsTranscripts_TCONS_l2_00003330 range=chr10:133112279-133113842 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003330 range=chr10:133112279-133113842 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	133112279	133113466	+	NA	NA	NA	NA	TCERG1L	NA	chr10:133102279-133109984	inter
CUST_34436_PI429285431	5.248156	P	5.3116565	P	0.956939419023024	0	lncRNA	35916-1_{1..1478}	n341313|CR611240|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3782|NULL|1.0128700|-0.1642036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341313|CR611240|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3782|NULL|1.0128700|-0.1642036	chr7	126986843	126988320	-	NA	NA	NA	NA	ZNF800	NA	chr7:127010353-127023619	inner
CUST_23166_PI429285431	0.891757	A	0.9016834	A	0.993143159971141	0	lncRNA	24737-1_{1..490}	lnc-AC012123.1.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC012123.1.1-1:5	chr18	 30517950	 30518439	+	lnc-AC012123.1.1-1	lnc-AC012123.1.1-1:5	ENSG00000263765.1	RP11-746B8.1	C18orf34	"hg19_refFlat_CCDC178:range=chr18:30517975-309920525'pad=0,hg19_refFlat_CCDC178:range=chr18:30517975-309920525'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90chr18:30517366-30528280"	NA	inner
CUST_25917_PI429285431	0.87883383	A	1.623085	A	0.596977652007226	0	lncRNA	27436-1_{1..361}	lnc-TMC7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMC7-2:1	chr16	 18823279	 18823639	+	lnc-TMC7-2	lnc-TMC7-2:1	ENSG00000260017.1	RP11-1035H13.2	SMG1	"hg19_refFlat_SMG1:range=chr16:18820891-189373635'pad=0,hg19_refFlat_SMG1:range=chr16:18820891-189373635'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60chr16:18816175-18833503"	NA	inner
CUST_29713_PI429285431	5.9950094	P	5.237835	P	1.69017707330901	0	lncRNA	31475-1_{1..352}	n333381|BC005199|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086482|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086482|0.1922470|-0.3881398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333381|BC005199|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086482|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086482|0.1922470|-0.3881398	chr3	 14693269	 14693620	+	NA	NA	NA	NA	C3orf19	NA	chr3:14693253-14707168	inner
CUST_41480_PI429285431	6.564972	P	6.6597314	P	0.936428403712448	0	lncRNA	42679-1_{1..76}	ENST00000579909 ncrna:miRNA chromosome:GRCh37:15:69094189:69094264:-1 gene:ENSG00000265195 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579909 ncrna:miRNA chromosome:GRCh37:15:69094189:69094264:-1 gene:ENSG00000265195 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 69094189	 69094264	-	ENSG00000265195	ENST00000579909	NA	NA	ANP32A	NA	chr15:69084189-69104264	inner
CUST_38432_PI429285431	0.9012846	A	0.89902496	A	1.00156749032576	0	lncRNA	39459-1_{1..1167}	n382620|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002asf.1||6.9280600|-0.1292142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n382620|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002asf.1||6.9280600|-0.1292142	chr15	 69755445	 69756611	+	NA	NA	NA	NA	RPLP1	NA	chr15:69745445-69747884	inter
CUST_48319_PI429285431	1.0983225	A	1.3575352	A	0.835543763613779	0	lncRNA	52177-1_{1..881}	hg19_lincRNAsTranscripts_TCONS_l2_00000173 range=chr1:26553803-26556426 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000173 range=chr1:26553803-26556426 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 26553803	 26554683	+	NA	NA	NA	NA	CEP85	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-27.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0,hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20chr1:26545577-26566426"	NA	inter
CUST_19291_PI429285431	6.5406423	P	7.1652956	P	0.648575620483453	0	lncRNA	20958-1_{1..428}	lnc-CNTLN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CNTLN-2:1	chr9	 16727313	 16727740	+	lnc-CNTLN-2	lnc-CNTLN-2:1	ENSG00000234779.1	RP11-62F24.2	BNC2	NA	chr9:16717313-16737522	inner
CUST_3461_PI429285431	5.4567933	P	5.588772	P	0.912578961791675	0	lncRNA	3432-1_{1..429}	"transcript_id ""ENST00000447148.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447148.1"" | genecode_v17"	chr9	 88370957	 88371385	-	ENSG00000229454.1	ENST00000447148.1	RP11-202I11.2	RP11-202I11.2-001	NA	"hg19_refFlat_KIF27:range=chr9:86451916-865305065'pad=0,hg19_refFlat_KIF27:range=chr9:86451916-865305065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90"	NA	inter
CUST_47878_PI429285431	0.90835243	A	1.0626063	A	0.898596987237485	0	lncRNA	51774-1_{1..903}	"gi|410171524|ref|XR_171233.1| PREDICTED: Homo sapiens uncharacterized LOC100996636 (LOC100996636), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171524|ref|XR_171233.1| PREDICTED: Homo sapiens uncharacterized LOC100996636 (LOC100996636), misc_RNA"	NA	NA	NA	NA	NA	XR_171233.1	NA	NA	NA	"hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30"	NA	Unknown
CUST_35920_PI429285431	1.281872	A	1.0784279	A	1.1514438819072	0	lncRNA	37288-2_{3001..6000}	n344563|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_111|NULL|-1.4073800|-0.2503648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344563|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_111|NULL|-1.4073800|-0.2503648	chr22	 27056225	 27059224	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012042	2.4270818	A	3.639614	P	0.431510568725381	0	lncRNA	ENST00000429730	NA	NA	NA	NA	XLOC_l2_007731	NA	ENST00000429730	THC2648454	NA	"BROAD Institute lincRNA (XLOC_l2_007731), lincRNA [TCONS_l2_00015589]"	chr2:208531689-208531748	hs|2q33.3	Agilent_HUMAN_G3V2	ENST00000429730	ENST00000429730	chr2	208531689	208531748	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29582_PI429285431	7.173053	P	7.417062	P	0.844395619793364	0	lncRNA	31342-1_{1..378}	n333085|AF285095|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076253|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076253|-0.9231130|-0.0605037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333085|AF285095|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076253|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076253|-0.9231130|-0.0605037	chr20	 62711526	 62711903	+	NA	NA	NA	NA	OPRL1	NA	chr20:62711471-62731996	inner
CUST_46507_PI429285431	7.1840467	P	7.470368	P	0.819990272311256	0	lncRNA	50700-1_{1..2019}	"gi|375065858|ref|NR_046311.1| Homo sapiens nei endonuclease VIII-like 1 (E. coli) (NEIL1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375065858|ref|NR_046311.1| Homo sapiens nei endonuclease VIII-like 1 (E. coli) (NEIL1), transcript variant 3, non-coding RNA"	Chr15	 75639960	 75641978	+	79661	NR_046311.1	NA	NA	NA	NA	NA	inter
CUST_14080_PI429285431	3.5936055	P	3.9567955	P	0.777443641395199	0	lncRNA	15725-1_{1..455}	lnc-TMEM132B-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132B-4:4	chr12	126656137	126656591	+	lnc-TMEM132B-4	lnc-TMEM132B-4:4	XLOC_009937	linc-TMEM132C-12	NA	NA	NA	inter
CUST_15419_PI429285431	0.89275086	A	1.0199299	A	0.915620049938051	0	lncRNA	17105-1_{1..396}	lnc-HLA-DQA2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-HLA-DQA2-1:2	chr6	 32686367	 32686762	+	lnc-HLA-DQA2-1	lnc-HLA-DQA2-1:2	XLOC_005258	linc-HLA-DQA2	NA	NA	NA	inter
LNCA_21_P0006323	6.069806	P	6.359725	P	0.817947980893897	0	lncRNA	TCONS_00016482	NA	NA	NA	NA	XLOC_007861	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007861), lincRNA [TCONS_00016482]"	chr9:131213544-131213485	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_00016482	TCONS_00016482	chr9	131213485	131213544	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25338_PI429285431	11.097146	P	11.099431	P	0.998417412307136	0	lncRNA	26869-1_{1..586}	lnc-MTO1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTO1-1:2	chr6	 74280010	 74280595	+	lnc-MTO1-1	lnc-MTO1-1:2	ENSG00000229862.1	RP11-505P4.7	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70"	NA	inter
CUST_5070_PI429285431	4.6269813	P	5.00843	P	0.767666341864132	0	lncRNA	5010-1_{1..965}	"transcript_id ""ENST00000546968.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546968.1"" | genecode_v17"	chr14	105561528	105562492	+	ENSG00000257556.1	ENST00000546968.1	RP11-44N21.1	RP11-44N21.1-002	NA	NA	NA	inter
CUST_21901_PI429285431	7.7405925	P	7.7566752	P	0.988914226957085	0	lncRNA	23510-1_{1..566}	lnc-MACC1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MACC1-1:8	chr7	 20007760	 20008325	-	lnc-MACC1-1	lnc-MACC1-1:8	ENSG00000243004.1	AC005062.2	NA	NA	NA	inter
CUST_1460_PI429285431	0.88948035	A	0.9001393	A	0.992639004674205	0	lncRNA	1449-1_{1..254}	"transcript_id ""ENST00000514281.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514281.1"" | genecode_v17"	chr3	126007710	126007963	-	ENSG00000251448.1	ENST00000514281.1	RP11-71E19.2	RP11-71E19.2-001	LOC644662	NA	chr3:125997710-126010368	inter
CUST_46248_PI429285431	0.89974886	A	1.0597836	A	0.895003519043669	0	lncRNA	50487-1_{1..1001}	"gi|388596717|ref|NR_046989.1| Homo sapiens long intergenic non-protein coding RNA 351 (LINC00351), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|388596717|ref|NR_046989.1| Homo sapiens long intergenic non-protein coding RNA 351 (LINC00351), non-coding RNA"	Chr13	 85937738	 85938738	+	100874137	NR_046989.1	NA	NA	NA	NA	NA	inter
CUST_12173_PI429285431	0.9033158	A	0.91332746	A	0.993084469200461	0	lncRNA	13772-1_{1..1191}	lnc-SLC44A3-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC44A3-2:3	chr1	 95153449	 95154639	+	lnc-SLC44A3-2	lnc-SLC44A3-2:3	XLOC_000303	linc-SLC44A3-1	NA	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-55.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-20.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20"	NA	inter
LNCA_21_P0012477	9.206831	P	9.059905	P	1.1072077911388	0	lncRNA	THC2685486	NA	NA	NA	NA	XLOC_l2_010493	NA	NA	THC2685486	NA	"BROAD Institute lincRNA (XLOC_l2_010493), lincRNA [TCONS_l2_00019671]"	chr3:193719515-193719456	hs|3q29	Agilent_HUMAN_G3V2	THC2685486	THC2685486	chr3	193719456	193719515	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38503_PI429285431	2.9064145	A	1.6099386	A	2.45628148469303	0	lncRNA	39517-1_{1..3000}	n383066|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gqm.2||1.5746600|-0.3348219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383066|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gqm.2||1.5746600|-0.3348219	chr17	 16691248	 16694247	+	NA	NA	NA	NA	NA	"hg19_refFlat_SRP68:range=chr17:74035787-740465685'pad=0,hg19_refFlat_SRP68:range=chr17:74035787-740465685'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_SRP68:range=chr17:74035787-740685725'pad=0,hg19_refFlat_SRP68:range=chr17:74035787-740685725'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60"	NA	inter
CUST_1650_PI429285431	0.89172214	A	1.0210693	A	0.91424506551827	0	lncRNA	1635-1_{1..579}	"transcript_id ""ENST00000597982.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597982.1"" | genecode_v17"	chr3	195435025	195435603	+	ENSG00000242086.3	ENST00000597982.1	AC069513.3	AC069513.3-026	MUC20	"hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.42;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50chr3:195447753-195453460"	NA	inter
CUST_7379_PI429285431	0.9468249	A	0.89217055	A	1.03861023667874	0	lncRNA	9026-1_{1..3000}	lnc-CAMK1G-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CAMK1G-1:2	chr1	209605549	209608548	+	lnc-CAMK1G-1	lnc-CAMK1G-1:2	ENSG00000230937	CTA-55I10.1	LOC642587	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50chr1:209602168-209605894"	NA	inter
CUST_7295_PI429285431	1.787254	A	1.1043377	A	1.60538163623639	0	lncRNA	8300-1_{1..298}	"transcript_id ""ENST00000411341.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411341.1"" | genecode_v17"	chr12	 76709531	 76709828	+	ENSG00000223273.1	ENST00000411341.1	RN7SKP172	RN7SKP172-201	NA	NA	NA	inter
CUST_30572_PI429285431	6.304409	P	8.748901	P	0.183710755777137	0	lncRNA	32354-1_{1..268}	n335785|X51439|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321649|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321649|0.6322030|-0.2739565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335785|X51439|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321649|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321649|0.6322030|-0.2739565	chr11	 18291248	 18291515	+	NA	NA	NA	NA	SAA1	NA	chr11:18283432-18291524	inner
CUST_30231_PI429285431	13.564955	P	13.137905	P	1.34448158952634	0	lncRNA	32006-1_{1..246}	n335098|AJ844644|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249446|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249446|1.4140000|-0.0903692	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335098|AJ844644|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249446|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249446|1.4140000|-0.0903692	chr12	  6645712	  6645957	+	NA	NA	NA	NA	NCAPD2	NA	chr12:6635712-6641132	inner
CUST_19346_PI429285431	0.88013506	A	0.8860004	A	0.995942709251228	0	lncRNA	21012-1_{1..356}	lnc-GPR12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR12-1:1	chr13	 27215413	 27215768	-	lnc-GPR12-1	lnc-GPR12-1:1	ENSG00000237001.1	WASF3-AS1	WASF3	NA	chr13:27205413-27225501	inner
CUST_36074_PI429285431	4.763111	P	4.768721	P	0.996118994959507	0	lncRNA	37380-1_{1..332}	n344663|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_212|NULL|-1.3599300|-0.2475904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344663|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_212|NULL|-1.3599300|-0.2475904	chr2	 48293195	 48293526	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35083_PI429285431	1.821316	A	2.6158059	A	0.576546989607763	0	lncRNA	36492-1_{1..2103}	n342045|BC041995|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4526|NULL|1.7583000|-0.2373853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342045|BC041995|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4526|NULL|1.7583000|-0.2373853	chr12	120554710	120556812	+	NA	NA	NA	NA	GCN1L1	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00chr12:120565014-120566800"	NA	inter
CUST_29739_PI429285431	0.9035771	A	1.3050324	A	0.757094188944428	0	lncRNA	31501-1_{1..348}	n333413|BC010383|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087476|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087476|0.8111230|-0.1074495	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333413|BC010383|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087476|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087476|0.8111230|-0.1074495	chr4	 88416159	 88416506	-	NA	NA	NA	NA	SPARCL1	NA	chr4:88406159-88450655	inner
LNCA_21_P0005413	4.565876	P	4.9986534	P	0.740834196880376	0	lncRNA	BC040593	NA	BC040593	NA	Hs.649292	LOC340340	uncharacterized LOC340340	NA	THC2627984	NA	"BROAD Institute lincRNA (XLOC_006200), lincRNA [TCONS_00013558]"	chr7:106421520-106421579	hs|7q22.3	Agilent_HUMAN_G3V2	BC040593	BC040593	chr7	106421520	106421579	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30380_PI429285431	3.5717938	P	4.0493174	P	0.718209379896403	0	lncRNA	32156-1_{1..704}	n335492|BC054881|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259473|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259473|3.9055100|-0.1486747	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335492|BC054881|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259473|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259473|3.9055100|-0.1486747	chr8	 37734783	 37735486	-	NA	NA	NA	NA	RAB11FIP1	NA	chr8:37724783-37757015	inner
CUST_30367_PI429285431	0.8793701	A	1.1378977	A	0.835940636795132	0	lncRNA	32143-1_{1..243}	n335465|AY780649|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257687|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257687|0.4299140|-0.0888535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335465|AY780649|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257687|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257687|0.4299140|-0.0888535	chr6	 35762886	 35763128	-	NA	NA	NA	NA	LHFPL5	NA	chr6:35773071-35775057	inner
CUST_6097_PI429285431	0.8941712	A	0.90008795	A	0.995907219767333	0	lncRNA	6023-1_{1..469}	"transcript_id ""ENST00000578243.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578243.1"" | genecode_v17"	chr18	 14903579	 14904047	+	ENSG00000263618.1	ENST00000578243.1	RP11-527H14.4	RP11-527H14.4-003	NA	NA	NA	inter
CUST_16556_PI429285431	0.90035343	A	0.9063786	A	0.995832379138824	0	lncRNA	18257-1_{1..630}	lnc-GALNTL4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GALNTL4-2:1	chr11	 11672419	 11673048	-	lnc-GALNTL4-2	lnc-GALNTL4-2:1	XLOC_009375	linc-GALNTL4	NA	NA	NA	inter
CUST_19870_PI429285431	1.6737661	A	1.3007926	A	1.29501921120471	0	lncRNA	21526-1_{1..331}	lnc-GALC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GALC-1:1	chr14	 88481861	 88482191	-	lnc-GALC-1	lnc-GALC-1:1	ENSG00000258407.1	RP11-300J18.2	GPR65	"hg19_refFlat_GPR65:range=chr14:88477192-884782055'pad=0,hg19_refFlat_GPR65:range=chr14:88477192-884782055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50chr14:88471861-88481155"	NA	inter
CUST_41156_PI429285431	2.08471	A	2.698358	A	0.653542063790763	0	lncRNA	41962-1_{1..92}	ENST00000583321 ncrna:miRNA chromosome:GRCh37:17:7991374:7991465:1 gene:ENSG00000264005 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583321 ncrna:miRNA chromosome:GRCh37:17:7991374:7991465:1 gene:ENSG00000264005 gene_biotype:miRNA transcript_biotype:miRNA	chr17	  7991374	  7991465	+	ENSG00000264005	ENST00000583321	NA	NA	ALOXE3	NA	chr17:7999218-8001465	inter
CUST_45919_PI429285431	7.752784	P	7.880118	P	0.915521708390269	0	lncRNA	50229-1_{1..3000}	"gi|410170632|ref|XR_171097.1| PREDICTED: Homo sapiens uncharacterized LOC100507283 (LOC100507283), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410170632|ref|XR_171097.1| PREDICTED: Homo sapiens uncharacterized LOC100507283 (LOC100507283), misc_RNA"	NA	NA	NA	NA	NA	XR_171097.1	NA	NA	NA	"hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50"	NA	Unknown
CUST_37791_PI429285431	1.1906317	A	1.4852108	A	0.815310160899679	0	lncRNA	38884-2_{3001..6000}	n346298|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1848|NULL|-1.3013300|-0.3612458	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346298|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1848|NULL|-1.3013300|-0.3612458	chr3	165181149	165184148	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33457_PI429285431	0.88003457	A	0.878937	A	1.00076106701561	0	lncRNA	35032-1_{1..2167}	n340191|BC038734|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2652|NULL|-1.0868300|-0.3570179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340191|BC038734|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2652|NULL|-1.0868300|-0.3570179	chr4	102265024	102267190	-	NA	NA	NA	NA	PPP3CA	NA	chr4:102255024-102268628	inner
CUST_14480_PI429285431	0.8855056	A	0.8934445	A	0.994512286662311	0	lncRNA	16144-1_{1..215}	lnc-CBLB-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLB-6:1	chr3	106489852	106490066	-	lnc-CBLB-6	lnc-CBLB-6:1	XLOC_003201	linc-CBLB-1	NA	NA	NA	inter
CUST_24947_PI429285431	1.1626632	A	1.1728123	A	0.992989866374244	0	lncRNA	26487-1_{1..579}	lnc-GALNTL5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GALNTL5-2:1	chr7	151504529	151505107	+	lnc-GALNTL5-2	lnc-GALNTL5-2:1	ENSG00000242048.2	RP13-452N2.1	PRKAG2	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60chr7:151494529-151514728"	NA	inner
CUST_23126_PI429285431	0.9213284	A	0.91391176	A	1.00515405980913	0	lncRNA	24697-1_{1..577}	lnc-PHF14-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHF14-1:2	chr7	 11418914	 11419490	+	lnc-PHF14-1	lnc-PHF14-1:2	ENSG00000230333.1	AC004538.3	THSD7A	NA	chr7:11410062-11428993	inner
CUST_28197_PI429285431	2.296252	A	3.3371534	P	0.486023709811671	0	lncRNA	29826-1_{1..416}	n325479|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322599|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322599|-1.2628900|-0.2494829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325479|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322599|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322599|-1.2628900|-0.2494829	chr2	  3114763	  3115178	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30720_PI429285431	6.52086	P	6.627341	P	0.928850940193146	0	lncRNA	32502-1_{1..200}	n336266|Y10152|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325555|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325555|-1.0796400|-0.1443410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336266|Y10152|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325555|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325555|-1.0796400|-0.1443410	chr7	 30721575	 30721774	-	NA	NA	NA	NA	CRHR2	NA	chr7:30711575-30739719	inner
CUST_11498_PI429285431	4.1096077	P	3.9211602	P	1.13953678776168	0	lncRNA	13067-1_{1..1269}	lnc-KCNN4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNN4-1:1	chr19	 44289294	 44290562	-	lnc-KCNN4-1	lnc-KCNN4-1:1	XLOC_013347	linc-KCNN4	LYPD5	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80chr19:44300079-44300302"	NA	inter
CUST_13882_PI429285431	2.2018282	A	2.4587193	A	0.836889411831938	0	lncRNA	15525-4_{9001..10803}	lnc-CRYBA4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CRYBA4-1:2	chr22	 27073121	 27074923	+	lnc-CRYBA4-1	lnc-CRYBA4-1:2	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
CUST_24383_PI429285431	3.274984	P	3.3906915	P	0.922929593554566	0	lncRNA	25936-1_{1..542}	lnc-DCLK3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DCLK3-2:1	chr3	 35693200	 35693741	-	lnc-DCLK3-2	lnc-DCLK3-2:1	ENSG00000230830.1	ARPP21-AS1	ARPP21	NA	chr3:35683849-35703453	inner
CUST_46326_PI429285431	10.236564	P	9.632603	P	1.51988376922334	0	lncRNA	50554-2_{3001..3682}	"gi|373838739|ref|NR_046095.1| Homo sapiens dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis) (DACT1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373838739|ref|NR_046095.1| Homo sapiens dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis) (DACT1), transcript variant 4, non-coding RNA"	Chr14	 59108555	 59109236	+	51339	NR_046095.1	NA	NA	NA	NA	NA	inter
CUST_9063_PI429285431	0.883552	A	0.883677	A	0.999913360355861	0	lncRNA	10586-2_{3001..4993}	lnc-ANKS1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKS1A-1:1	chr6	 35130447	 35132439	+	lnc-ANKS1A-1	lnc-ANKS1A-1:1	ENSG00000244904	XLOC_005269	NA	NA	NA	inter
LNCA_21_P0011735	2.641387	A	3.2159197	P	0.671503721378939	0	lncRNA	BC068609	NA	BC068609	NA	NA	XLOC_l2_006994	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006994), lincRNA [TCONS_l2_00013005]"	chr19:28927848-28927689	hs|19q12	Agilent_HUMAN_G3V2	BC068609	BC068609	chr19	 28927689	 28927848	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48941_PI429285431	6.401458	P	6.8098364	P	0.753469803605817	0	lncRNA	52783-1_{1..450}	hg19_lincRNAsTranscripts_TCONS_l2_00019588 range=chr3:155761851-155762411 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019588 range=chr3:155761851-155762411 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	155761851	155762300	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012207	0.88415414	A	0.88403624	A	1.00008172539193	0	lncRNA	TCONS_l2_00017241	NA	NA	NA	NA	XLOC_l2_009219	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009219), lincRNA [TCONS_l2_00017241]"	chr21:40362800-40362741	hs|21q22.2	Agilent_HUMAN_G3V2	TCONS_l2_00017241	TCONS_l2_00017241	chr21	 40362741	 40362800	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41807_PI429285431	11.828215	P	11.671006	P	1.11512775308738	0	lncRNA	43395-1_{1..151}	ENST00000579424 ncrna:miRNA chromosome:GRCh37:7:151130575:151130725:-1 gene:ENSG00000265810 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579424 ncrna:miRNA chromosome:GRCh37:7:151130575:151130725:-1 gene:ENSG00000265810 gene_biotype:miRNA transcript_biotype:miRNA	chr7	151130575	151130725	-	ENSG00000265810	ENST00000579424	NA	NA	CRYGN	NA	chr7:151127056-151137099	inter
CUST_3295_PI429285431	1.1350443	A	1.4112614	A	0.825753394354574	0	lncRNA	3273-1_{1..553}	"transcript_id ""ENST00000533496.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533496.1"" | genecode_v17"	chr8	125847126	125847678	-	ENSG00000255080.1	ENST00000533496.1	RP11-1082L8.3	RP11-1082L8.3-001	NA	NA	NA	inter
CUST_36851_PI429285431	3.0636554	A	2.9388027	A	1.09039639687741	0	lncRNA	38014-3_{6001..9000}	n345322|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_871|NULL|-1.4390300|-0.1893230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345322|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_871|NULL|-1.4390300|-0.1893230	chr16	 85204652	 85207651	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_8356_PI429285431	5.593784	P	5.487958	P	1.07611032986247	0	lncRNA	9936-1_{1..822}	lnc-BTNL8-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTNL8-3:5	chr5	180261312	180262133	+	lnc-BTNL8-3	lnc-BTNL8-3:5	ENSG00000245060	CTC-205M6.2	NA	NA	NA	inter
CUST_24974_PI429285431	1.7158508	A	1.6898408	A	1.01819225731109	0	lncRNA	26514-1_{1..730}	lnc-TMEM41B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM41B-3:1	chr11	  9514086	  9514815	-	lnc-TMEM41B-3	lnc-TMEM41B-3:1	ENSG00000255180.1	CTD-2371O3.3	ZNF143	NA	chr11:9504086-9524557	inner
CUST_16328_PI429285431	0.89582574	A	0.89653325	A	0.999509711668906	0	lncRNA	18029-1_{1..931}	lnc-LEKR1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LEKR1-2:1	chr3	156818455	156819385	+	lnc-LEKR1-2	lnc-LEKR1-2:1	XLOC_002892	linc-PTX3-4	NA	NA	NA	inter
CUST_5126_PI429285431	2.7188182	A	3.2192488	P	0.706895763101022	0	lncRNA	5066-1_{1..693}	"transcript_id ""ENST00000421447.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421447.1"" | genecode_v17"	chr15	 30345145	 30345837	-	ENSG00000229389.1	ENST00000421447.1	CTD-2022H16.1	CTD-2022H16.1-001	GOLGA8J	NA	chr15:30375158-30375267	inter
CUST_46041_PI429285431	8.704314	P	8.750951	P	0.968190605036298	0	lncRNA	50318-2_{3001..3955}	"gi|378744191|ref|NR_046389.1| Homo sapiens acid-sensing (proton-gated) ion channel 1 (ASIC1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378744191|ref|NR_046389.1| Homo sapiens acid-sensing (proton-gated) ion channel 1 (ASIC1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_046389.1	NA	NA	NA	NA	NA	Unknown
CUST_21174_PI429285431	0.8906162	A	0.91912127	A	0.980435705275027	0	lncRNA	22798-1_{1..889}	lnc-SLIT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SLIT2-1:1	chr4	 19910835	 19911723	+	lnc-SLIT2-1	lnc-SLIT2-1:1	ENSG00000248515.1	RP11-608O21.1	NA	NA	NA	inter
CUST_37246_PI429285431	2.6506732	A	2.5249858	A	1.09102745000458	0	lncRNA	38353-1_{1..277}	n345677|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1226|NULL|-1.3145300|-0.2776231	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345677|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1226|NULL|-1.3145300|-0.2776231	chr18	 14250368	 14250644	+	NA	NA	NA	NA	LOC100652806	NA	chr18:14240368-14249475	inter
CUST_37870_PI429285431	1.630361	A	3.1706364	A	0.3438198155657	0	lncRNA	38962-1_{1..319}	n346406|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1956|NULL|-1.4800200|-0.2071267	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346406|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1956|NULL|-1.4800200|-0.2071267	chr10	 49195625	 49195943	-	NA	NA	NA	NA	FAM25C	NA	chr10:49185625-49207825	inter
CUST_14772_PI429285431	0.88832915	A	0.88908726	A	0.999474656232331	0	lncRNA	16433-1_{1..277}	lnc-ZSCAN30-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZSCAN30-2:1	chr18	 32513495	 32513771	-	lnc-ZSCAN30-2	lnc-ZSCAN30-2:1	XLOC_012810	linc-NOL4-2	NA	NA	NA	inter
CUST_1558_PI429285431	3.483658	P	3.6906338	P	0.866351388596546	0	lncRNA	1545-1_{1..563}	"transcript_id ""ENST00000424941.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424941.2"" | genecode_v17"	chr3	172278691	172279253	-	ENSG00000223387.2	ENST00000424941.2	RP11-408H1.3	RP11-408H1.3-002	NA	NA	NA	inter
CUST_51374_PI429285431	4.964346	P	5.2323656	P	0.830458741663602	0	lncRNA	54970-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00009366 range=chr15:100326887-100347024 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009366 range=chr15:100326887-100347024 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	100326887	100329886	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0,hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0,hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_GOLGA8B:range=chr15:34819833-348281135'pad=0,hg19_refFlat_GOLGA8B:range=chr15:34819833-348281135'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0,hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0,hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-59.20;hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00;hg19_refFlat_GOLGA8A:range=chr15:34673612-346818925'pad=0,hg19_refFlat_GOLGA8A:range=chr15:34673612-346818925'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0,hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_GOLGA2:range=chr9:131019346-1310382555'pad=0,hg19_refFlat_GOLGA2:range=chr9:131019346-1310382555'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90"	NA	inter
CUST_37894_PI429285431	0.9034107	A	0.89454895	A	1.00616140084793	0	lncRNA	38984-1_{1..2350}	n346430|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1980|NULL|-1.3196400|-0.1740733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n346430|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1980|NULL|-1.3196400|-0.1740733	chr7	100942828	100945177	+	NA	NA	NA	NA	RABL5	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70chr7:100956648-100964290"	NA	inter
CUST_13290_PI429285431	6.2625318	P	6.5056562	P	0.84491352648245	0	lncRNA	14923-1_{1..699}	lnc-SIK1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIK1-6:1	chr21	 44751736	 44752434	-	lnc-SIK1-6	lnc-SIK1-6:1	XLOC_014101	linc-U2AF1-4	NA	NA	NA	inter
CUST_48724_PI429285431	2.9916878	A	4.472234	P	0.358353114907652	0	lncRNA	52565-2_{3001..3176}	hg19_lincRNAsTranscripts_TCONS_l2_00014893 range=chr2:130783589-130806521 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014893 range=chr2:130783589-130806521 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	130786589	130786764	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21919_PI429285431	0.89833796	A	1.134818	A	0.848813766542212	0	lncRNA	23528-1_{1..1124}	lnc-PANK3-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PANK3-6:1	chr5	167087063	167088186	-	lnc-PANK3-6	lnc-PANK3-6:1	ENSG00000254187.1	CTB-78F1.1	ODZ2	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40chr5:167077063-167097486"	NA	inner
CUST_26702_PI429285431	2.0386724	A	2.5364428	A	0.70820041782264	0	lncRNA	28203-7_{18001..21000}	n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	chr13	 70699309	 70702308	+	NA	NA	NA	NA	KLHL1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0,hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0 3'pad=0 strand=- repeatMasking=none,-105.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr13:70671309-70682625"	NA	inner
CUST_3163_PI429285431	9.889355	P	9.66098	P	1.171514653676	0	lncRNA	3142-1_{1..271}	"transcript_id ""ENST00000518412.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518412.1"" | genecode_v17"	chr8	 67104328	 67104598	+	ENSG00000253138.1	ENST00000518412.1	RP11-366K18.3	RP11-366K18.3-004	NA	NA	NA	inter
CUST_21762_PI429285431	1.4196671	A	1.1915747	A	1.17128519588464	0	lncRNA	23372-1_{1..479}	lnc-NID2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NID2-2:1	chr14	 52436441	 52436919	-	lnc-NID2-2	lnc-NID2-2:1	ENSG00000259007.1	RP11-463J10.3	GNG2	NA	chr14:52426441-52436518	inner
CUST_7068_PI429285431	4.171551	P	4.0160155	P	1.11383497512611	0	lncRNA	7013-1_{1..455}	"transcript_id ""ENST00000454131.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454131.1"" | genecode_v17"	chrX	 68789512	 68789966	-	ENSG00000228160.1	ENST00000454131.1	RP13-57D9.3	RP13-57D9.3-001	NA	NA	NA	inter
LNCA_21_P0004521	1.0953041	A	2.425346	A	0.397756689715122	0	lncRNA	TCONS_00010749	NA	NA	NA	NA	XLOC_004478	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004478), lincRNA [TCONS_00010749]"	chr5:95185632-95185691	hs|5q15	Agilent_HUMAN_G3V2	TCONS_00010749	TCONS_00010749	chr5	 95185632	 95185691	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38321_PI429285431	0.8810092	A	1.2547872	A	0.771758835619172	0	lncRNA	39367-2_{3001..3508}	n382029|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vau.1||0.0679518|-0.3980982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382029|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vau.1||0.0679518|-0.3980982	chr13	 46629982	 46630489	+	NA	NA	NA	NA	CPB2	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.30chr13:46627322-46679211"	NA	inner
CUST_42439_PI429285431	0.88888764	A	1.3174534	A	0.743000063924638	0	lncRNA	45164-1_{1..136}	ENST00000364133 ncrna:snoRNA chromosome:GRCh37:1:54236691:54236826:-1 gene:ENSG00000201003 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364133 ncrna:snoRNA chromosome:GRCh37:1:54236691:54236826:-1 gene:ENSG00000201003 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 54236691	 54236826	-	ENSG00000201003	ENST00000364133	NA	NA	TMEM48	NA	chr1:54231133-54246826	inter
CUST_1193_PI429285431	0.91933465	A	1.1032373	A	0.880318413577572	0	lncRNA	1184-1_{1..626}	"transcript_id ""ENST00000422017.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000422017.1"" | genecode_v17"	chr2	193508828	193509453	-	ENSG00000232227.1	ENST00000422017.1	AC013401.2	AC013401.2-001	NA	NA	NA	inter
LNCA_21_P0003216	8.8126545	P	8.992449	P	0.88282873900159	0	lncRNA	TCONS_00006780	NA	NA	NA	NA	XLOC_002573	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002573), lincRNA [TCONS_00006780]"	chr3:9291439-9291498	hs|3p25.3	Agilent_HUMAN_G3V2	TCONS_00006780	TCONS_00006780	chr3	  9291439	  9291498	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31366_PI429285431	8.472689	P	8.508422	P	0.97553598755728	0	lncRNA	33145-1_{1..1590}	n337832|AF070527|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|215|NULL|-0.7421690|-0.1768021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337832|AF070527|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|215|NULL|-0.7421690|-0.1768021	chr15	 63135273	 63136862	+	NA	NA	NA	NA	TLN2	NA	chr15:63125273-63136830	inner
CUST_40237_PI429285431	3.5156894	P	1.7473098	A	3.40671108236856	0	lncRNA	41056-1_{1..3000}	n408132|NR_028080|lncRNA|Homosapiens||RefGeneNoncode|NR_028080||5.8337600|-0.3612266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n408132|NR_028080|lncRNA|Homosapiens||RefGeneNoncode|NR_028080||5.8337600|-0.3612266	chr5	 92953430	 92956429	-	NA	NA	NA	NA	FAM172A	NA	chr5:92953431-93447404	inter
LNCA_21_P0004166	0.90108585	A	0.9244095	A	0.983963257822931	0	lncRNA	ENST00000502287	NA	NA	NA	NA	XLOC_004952	NA	ENST00000502287	NA	NA	"BROAD Institute lincRNA (XLOC_004952), lincRNA [TCONS_00009751]"	chr5:107035811-107035752	hs|5q21.3	Agilent_HUMAN_G3V2	ENST00000502287	ENST00000502287	chr5	107035752	107035811	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45616_PI429285431	8.277996	P	8.939832	P	0.632073396805085	0	lncRNA	50001-1_{1..1967}	"gi|291575133|ref|NR_033414.1| Homo sapiens solute carrier family 29 (nucleoside transporters), member 3 (SLC29A3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|291575133|ref|NR_033414.1| Homo sapiens solute carrier family 29 (nucleoside transporters), member 3 (SLC29A3), transcript variant 4, non-coding RNA"	Chr10	 73079010	 73080976	+	55315	NR_033414.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0010568	0.905535	A	0.9270045	A	0.985228659237287	0	lncRNA	ENST00000451341	NA	NA	NA	NA	XLOC_l2_000514	NA	ENST00000451341	THC2735571	NA	"BROAD Institute lincRNA (XLOC_l2_000514), lincRNA [TCONS_l2_00000701]"	chr1:177326168-177332600	hs|1q25.2	Agilent_HUMAN_G3V2	ENST00000451341	ENST00000451341	chr1	177326168	177332600	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23139_PI429285431	6.746138	P	7.161906	P	0.749620337741613	0	lncRNA	24710-1_{1..1980}	lnc-CHRNA5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CHRNA5-1:1	chr15	 78920227	 78922206	+	lnc-CHRNA5-1	lnc-CHRNA5-1:1	ENSG00000259555.1	RP11-335K5.2	CHRNA3	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80chr15:78910227-78913637"	NA	inner
CUST_40609_PI429285431	5.0171337	P	5.2484837	P	0.851837412959801	0	lncRNA	41355-1_{1..1350}	n410091|NR_036524_3|lncRNA|Homosapiens||RefGeneNoncode|NR_036524_3||-1.0372800|-0.2666398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410091|NR_036524_3|lncRNA|Homosapiens||RefGeneNoncode|NR_036524_3||-1.0372800|-0.2666398	chr6	  2714908	  2716257	+	NA	NA	NA	NA	MYLK4	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr6:2704908-2739520"	NA	inner
CUST_28628_PI429285431	4.285165	P	4.1853647	P	1.07162511632196	0	lncRNA	30313-1_{1..462}	n325997|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047721|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047721|-0.8078280|-0.1873729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325997|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047721|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047721|-0.8078280|-0.1873729	chr10	 43481121	 43481582	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15197_PI429285431	3.3789263	P	3.8634675	P	0.71472432745201	0	lncRNA	16865-1_{1..473}	lnc-PAFAH1B1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAFAH1B1-1:1	chr17	  2592050	  2592522	+	lnc-PAFAH1B1-1	lnc-PAFAH1B1-1:1	XLOC_012078	linc-RAP1GAP2-2	PAFAH1B1	NA	chr17:2582050-2588909	inter
CUST_16869_PI429285431	0.89075196	A	1.0726955	A	0.881514655387346	0	lncRNA	18575-1_{1..803}	lnc-AC124890.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC124890.1-1:2	chr12	 69187068	 69187870	+	lnc-AC124890.1-1	lnc-AC124890.1-1:2	XLOC_009797	linc-MDM2	NA	NA	NA	inter
CUST_37996_PI429285431	2.4214184	A	1.6705159	A	1.68284523093349	0	lncRNA	39083-1_{1..267}	n346552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2102|NULL|-1.4868500|-0.1124075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2102|NULL|-1.4868500|-0.1124075	chr12	 20094331	 20094597	-	NA	NA	NA	NA	NA	"hg19_refFlat_TCP1:range=chr6:160200077-1602105005'pad=0,hg19_refFlat_TCP1:range=chr6:160200077-1602105005'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20"	NA	inter
CUST_916_PI429285431	0.9049082	A	0.9247434	A	0.986345368936271	0	lncRNA	906-1_{1..412}	"transcript_id ""ENST00000451698.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451698.1"" | genecode_v17"	chr2	 66924294	 66924705	-	ENSG00000237179.1	ENST00000451698.1	AC007392.4	AC007392.4-001	NA	NA	NA	inter
CUST_6858_PI429285431	1.1964195	A	1.6853127	A	0.712571555453757	0	lncRNA	6807-1_{1..661}	"transcript_id ""ENST00000578829.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578829.1"" | genecode_v17"	chr21	 38580804	 38581464	+	ENSG00000230366.5	ENST00000578829.1	DSCR9	DSCR9-002	TTC3	NA	chr21:38570804-38575408	inter
CUST_19615_PI429285431	0.90212524	A	0.9174422	A	0.989439252799376	0	lncRNA	21271-1_{1..590}	lnc-JPH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JPH1-1:1	chr8	 75262145	 75262734	-	lnc-JPH1-1	lnc-JPH1-1:1	ENSG00000253596.1	CTD-2320G14.2	GDAP1	NA	chr8:75262618-75272285	inter
CUST_7047_PI429285431	0.8912065	A	0.89681244	A	0.996121798219167	0	lncRNA	6992-1_{1..835}	"transcript_id ""ENST00000452501.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452501.1"" | genecode_v17"	chrX	 41134992	 41135826	+	ENSG00000223714.1	ENST00000452501.1	RP5-1172N10.2	RP5-1172N10.2-001	NA	NA	NA	inter
CUST_32814_PI429285431	3.442634	P	4.098432	P	0.634724308176155	0	lncRNA	34449-1_{1..633}	n339461|AJ457067|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1899|NULL|-0.3220100|-0.1992305	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339461|AJ457067|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1899|NULL|-0.3220100|-0.1992305	chr21	 31852017	 31852649	-	NA	NA	NA	NA	KRTAP19-1	NA	chr21:31852364-31852636	inner
CUST_43707_PI429285431	3.4121885	P	1.1876861	A	4.67349678027895	0	lncRNA	48455-2_{3001..6000}	"gi|323510632|ref|NR_024171.2| Homo sapiens Mdm4 p53 binding protein homolog (mouse) (MDM4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|323510632|ref|NR_024171.2| Homo sapiens Mdm4 p53 binding protein homolog (mouse) (MDM4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_024171.2	NA	NA	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20"	NA	Unknown
CUST_48502_PI429285431	12.1962595	P	12.365742	P	0.889161569484534	0	lncRNA	52353-3_{6001..8062}	hg19_lincRNAsTranscripts_TCONS_l2_00001907 range=chr1:247348512-247374139 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001907 range=chr1:247348512-247374139 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	247354512	247356573	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10"	NA	inter
CUST_29495_PI429285431	6.2526994	P	6.4387264	P	0.87902310986331	0	lncRNA	31253-1_{1..292}	n332923|AF086469|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067348|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067348|0.2463160|-0.1253030	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332923|AF086469|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067348|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067348|0.2463160|-0.1253030	chr11	 60671216	 60671507	-	NA	NA	NA	NA	TMEM109	NA	chr11:60681371-60684011	inner
CUST_6983_PI429285431	6.859641	P	7.143131	P	0.82160108956626	0	lncRNA	6931-1_{1..549}	"transcript_id ""ENST00000440858.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440858.1"" | genecode_v17"	chr22	 35107899	 35108447	-	ENSG00000237316.1	ENST00000440858.1	RP1-288L1.4	RP1-288L1.4-001	NA	NA	NA	inter
CUST_20469_PI429285431	0.88584244	A	0.9528693	A	0.954603241234826	0	lncRNA	22113-1_{1..542}	lnc-P2RY4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-P2RY4-1:1	chrX	 69384802	 69385343	-	lnc-P2RY4-1	lnc-P2RY4-1:1	ENSG00000203588.3	IGBP1-AS1	IGBP1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60chrX:69374802-69386174"	NA	inner
CUST_12654_PI429285431	1.0523394	A	1.420211	A	0.774924896281865	0	lncRNA	14268-1_{1..512}	lnc-TIMP4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TIMP4-1:1	chr3	 12275477	 12275988	-	lnc-TIMP4-1	lnc-TIMP4-1:1	XLOC_003048	linc-TIMP4	NA	NA	NA	inter
CUST_27654_PI429285431	0.9097194	A	0.92679894	A	0.988231165922297	0	lncRNA	29232-1_{1..693}	n324861|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171147|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171147|-1.3184100|-0.4308156	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324861|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171147|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171147|-1.3184100|-0.4308156	chr21	 24449354	 24450046	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5746_PI429285431	0.9035671	A	1.098249	A	0.873765531344039	0	lncRNA	5671-1_{1..304}	"transcript_id ""ENST00000585048.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585048.1"" | genecode_v17"	chr17	 16343793	 16344096	-	ENSG00000266651.1	ENST00000585048.1	RP11-138I1.3	RP11-138I1.3-001	C17orf76	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0,hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10chr17:16345328-16354266"	NA	inter
CUST_47748_PI429285431	0.91133213	A	2.302974	A	0.381130806534696	0	lncRNA	51693-2_{3001..6000}	"gi|385137069|ref|NR_047607.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 37, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|385137069|ref|NR_047607.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 37, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047607.1	NA	NA	NA	NA	NA	inter
CUST_44111_PI429285431	1.1833427	A	2.190939	A	0.497374241875447	0	lncRNA	48777-1_{1..638}	"gi|201860288|ref|NR_024136.1| Homo sapiens ghrelin/obestatin prepropeptide (GHRL), transcript variant 12, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|201860288|ref|NR_024136.1| Homo sapiens ghrelin/obestatin prepropeptide (GHRL), transcript variant 12, non-coding RNA"	Chr3	 10327434	 10328071	-	51738	NR_024136.1	NA	NA	NA	NA	NA	inter
CUST_48481_PI429285431	8.221925	P	8.83781	P	0.652529486153411	0	lncRNA	52334-1_{1..241}	hg19_lincRNAsTranscripts_TCONS_l2_00001825 range=chr1:226680710-226681472 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001825 range=chr1:226680710-226681472 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	226680710	226680950	-	NA	NA	NA	NA	C1orf95	NA	chr1:226680181-226691472	inter
CUST_51024_PI429285431	1.1764951	A	1.8059103	A	0.64643839761952	0	lncRNA	54667-5_{12001..13791}	hg19_lincRNAsTranscripts_TCONS_l2_00007045 range=chr13:19312253-19328859 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007045 range=chr13:19312253-19328859 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 19324253	 19326043	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31550_PI429285431	6.6047087	P	8.762703	M	0.224067560167849	0	lncRNA	33308-1_{1..975}	n338039|BC034638|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|426|NULL|-1.3574500|-0.2594479	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338039|BC034638|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|426|NULL|-1.3574500|-0.2594479	chr1	 87169187	 87170161	-	NA	NA	NA	NA	SH3GLB1	NA	chr1:87170253-87180145	inter
LNCA_19_P00319573	0.9052794	A	1.8569077	A	0.517048564808261	0	lncRNA	THC2541878	NA	NA	NA	NA	XLOC_014192	NA	NA	THC2541878	NA	"BROAD Institute lincRNA (XLOC_014192), lincRNA [TCONS_00029373]"	chr22:027042739-027042798	hs|22q12.1	Agilent_HUMAN_G3V2	THC2541878	THC2541878	chr22	 27042739	 27042798	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32692_PI429285431	0.88488215	A	0.995912	A	0.925926864491804	0	lncRNA	34338-1_{1..1536}	n339320|BC028133|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1752|NULL|2.0267200|-0.1114553	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339320|BC028133|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1752|NULL|2.0267200|-0.1114553	chr3	 42306480	 42308015	+	NA	NA	NA	NA	CCK	NA	chr3:42299318-42307662	inner
LNCA_21_P0008761	5.423163	P	5.4820113	P	0.960030203317844	0	lncRNA	TCONS_00023746	NA	NA	NA	NA	XLOC_011540	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011540), lincRNA [TCONS_00023746]"	chr15:79020009-79019950	hs|15q25.1	Agilent_HUMAN_G3V2	TCONS_00023746	TCONS_00023746	chr15	 79019950	 79020009	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3795524	0.88662004	A	1.2393062	A	0.783124636555915	0	lncRNA	XR_110000	XR_110000	XR_110000	100506485	NA	LOC100506485	uncharacterized LOC100506485	NA	THC2481442	NA	"PREDICTED: Homo sapiens hypothetical LOC100506485 (LOC100506485), miscRNA [XR_110000]"	chr3:46601116-46601175	hs|3p21.31	Agilent_HUMAN_G3V2	XR_110000	XR_110000	chr3	 46601116	 46601175	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50042_PI429285431	2.0974448	A	1.1364568	A	1.94664255653154	0	lncRNA	53778-1_{1..419}	hg19_lincRNAsTranscripts_TCONS_l2_00027739 range=chr8:47609252-47610282 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027739 range=chr8:47609252-47610282 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 47609252	 47609670	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10154_PI429285431	1.0729225	A	0.8844946	A	1.13952130647929	0	lncRNA	11678-1_{1..268}	lnc-HOOK1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOOK1-2:2	chr1	 60614185	 60614452	+	lnc-HOOK1-2	lnc-HOOK1-2:2	XLOC_000224	linc-NFIA-3	NA	NA	NA	inter
CUST_23049_PI429285431	0.89897925	A	0.9096523	A	0.992629303288136	0	lncRNA	24620-1_{1..469}	lnc-FAM161B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM161B-1:2	chr14	 74389279	 74389747	-	lnc-FAM161B-1	lnc-FAM161B-1:2	ENSG00000258891.1	RP5-1021I20.5	ZNF410	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ZNF410:range=chr14:74358879-743982445'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743982445'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70chr14:74379279-74398991"	NA	inter
CUST_15789_PI429285431	4.91428	P	5.514393	P	0.659702281765031	0	lncRNA	17479-1_{1..1827}	lnc-SLC44A3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC44A3-1:3	chr1	 95428535	 95430361	+	lnc-SLC44A3-1	lnc-SLC44A3-1:3	XLOC_000304	linc-TMEM56-3	NA	NA	NA	inter
CUST_22919_PI429285431	0.91681266	A	1.0093986	A	0.937840222219406	0	lncRNA	24495-1_{1..421}	lnc-A1CF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-A1CF-1:1	chr10	 52828245	 52828665	-	lnc-A1CF-1	lnc-A1CF-1:1	ENSG00000223502.1	RP11-96B5.3	PRKG1	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-17.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20chr10:52818245-52838313"	NA	inner
CUST_44342_PI429285431	3.2591858	P	3.3120055	P	0.964050281853276	0	lncRNA	48968-1_{1..3000}	"gi|375331930|ref|NR_046335.1| Homo sapiens family with sequence similarity 193, member A (FAM193A), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375331930|ref|NR_046335.1| Homo sapiens family with sequence similarity 193, member A (FAM193A), transcript variant 3, non-coding RNA"	Chr4	  2627159	  2630158	+	8603	NR_046335.1	NA	NA	NA	NA	NA	inter
CUST_25589_PI429285431	9.382038	P	9.485753	P	0.930633483348228	0	lncRNA	27119-1_{1..702}	lnc-PEX3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PEX3-1:1	chr6	143827107	143827808	+	lnc-PEX3-1	lnc-PEX3-1:1	ENSG00000229036.1	RP1-20N2.6	FUCA2	"hg19_refFlat_FUCA2:range=chr6:143816844-1438327715'pad=0,hg19_refFlat_FUCA2:range=chr6:143816844-1438327715'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70chr6:143817107-143833020"	NA	inner
CUST_49939_PI429285431	1.2287202	A	2.0666144	A	0.559459576965746	0	lncRNA	53689-1_{1..648}	hg19_lincRNAsTranscripts_TCONS_l2_00026855 range=chr7:116211006-116217680 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026855 range=chr7:116211006-116217680 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	116211006	116211653	-	NA	NA	NA	NA	CAV1	NA	chr7:116201006-116201239	inter
LNCA_21_P0005137	1.9596033	A	2.987793	P	0.490325024907916	0	lncRNA	TCONS_00012612	NA	NA	NA	NA	XLOC_005482	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005482), lincRNA [TCONS_00012612]"	chr6:139349575-139349634	hs|6q24.1	Agilent_HUMAN_G3V2	TCONS_00012612	TCONS_00012612	chr6	139349575	139349634	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001467	6.506352	P	6.484594	P	1.01519579600112	0	lncRNA	TCONS_00001389	NA	NA	NA	NA	XLOC_000704	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000704), lincRNA [TCONS_00001389]"	chr1:11786527-11786468	hs|1p36.22	Agilent_HUMAN_G3V2	TCONS_00001389	TCONS_00001389	chr1	 11786468	 11786527	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29011_PI429285431	0.90217537	A	0.9135726	A	0.992131164816431	0	lncRNA	30735-1_{1..418}	n326495|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099064|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099064|-1.1066200|-0.3382783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326495|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099064|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099064|-1.1066200|-0.3382783	chr1	103730088	103730505	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10006_PI429285431	3.3948646	P	3.8159995	P	0.746836891893349	0	lncRNA	11532-1_{1..779}	lnc-SCD-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCD-1:4	chr10	102154866	102155644	+	lnc-SCD-1	lnc-SCD-1:4	XLOC_008583	linc-WNT8B	NA	NA	NA	inter
CUST_34281_PI429285431	0.8824657	A	2.6861625	A	0.286439666967406	0	lncRNA	35780-1_{1..3000}	n341141|BC040643|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3607|NULL|-1.0975300|-0.3162465	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341141|BC040643|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3607|NULL|-1.0975300|-0.3162465	chr11	121500202	121503201	+	NA	NA	NA	NA	SORL1	NA	chr11:121490202-121504471	inner
CUST_42753_PI429285431	0.8788743	A	0.87898093	A	0.999926092447435	0	lncRNA	45717-1_{1..70}	ENST00000459604 ncrna:snoRNA chromosome:GRCh37:2:12170429:12170498:-1 gene:ENSG00000238503 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459604 ncrna:snoRNA chromosome:GRCh37:2:12170429:12170498:-1 gene:ENSG00000238503 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 12170429	 12170498	-	ENSG00000238503	ENST00000459604	NA	NA	NA	NA	NA	inter
LNCA_33_P3280759	0.8831622	A	0.8833384	A	0.99987787492466	0	lncRNA	XR_109674	XR_109674	XR_109674	   400867	Hs.689509	FLJ45139	FLJ45139 protein	NA	THC2489072	NA	"PREDICTED: Homo sapiens FLJ45139 protein (FLJ45139), miscRNA [XR_109674]"	chr21:40249274-40249215	hs|21q22.2	Agilent_HUMAN_G3V2	XR_109674	XR_109674	chr21	 40249215	 40249274	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44692_PI429285431	0.89406115	A	0.89024746	A	1.00264694546163	0	lncRNA	49250-1_{1..1269}	"gi|410170501|ref|XR_171039.1| PREDICTED: Homo sapiens zinc finger protein 192 pseudogene 1 (ZNF192P1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170501|ref|XR_171039.1| PREDICTED: Homo sapiens zinc finger protein 192 pseudogene 1 (ZNF192P1), misc_RNA"	NA	NA	NA	NA	NA	XR_171039.1	NA	NA	NA	NA	NA	Unknown
CUST_41713_PI429285431	1.0397072	A	0.8862586	A	1.11222494545713	0	lncRNA	43219-1_{1..94}	ENST00000385032 ncrna:miRNA chromosome:GRCh37:15:41983783:41983876:1 gene:ENSG00000207766 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385032 ncrna:miRNA chromosome:GRCh37:15:41983783:41983876:1 gene:ENSG00000207766 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 41983783	 41983876	+	ENSG00000207766	ENST00000385032	NA	NA	MGA	NA	chr15:41973783-41993876	inner
CUST_48163_PI429285431	2.3177924	A	2.251235	A	1.04721480598569	0	lncRNA	52029-1_{1..3000}	"gi|410169943|ref|XR_111668.3| PREDICTED: Homo sapiens uncharacterized LOC100506974 (LOC100506974), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410169943|ref|XR_111668.3| PREDICTED: Homo sapiens uncharacterized LOC100506974 (LOC100506974), misc_RNA"	NA	NA	NA	NA	NA	XR_111668.3	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40"	NA	Unknown
CUST_45534_PI429285431	0.91298944	A	0.9214517	A	0.994151577337418	0	lncRNA	49940-3_{6001..6118}	"gi|223468639|ref|NR_026794.1| Homo sapiens uncharacterized LOC731789 (LOC731789), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223468639|ref|NR_026794.1| Homo sapiens uncharacterized LOC731789 (LOC731789), non-coding RNA"	Chr10	 26938037	 26938154	+	731789	NR_026794.1	NA	NA	NA	NA	NA	inter
CUST_43268_PI429285431	0.91545063	A	0.9196753	A	0.997075965242134	0	lncRNA	48086-1_{1..575}	ENST00000605675 havana:sense_intronic chromosome:GRCh37:20:14607559:14617170:1 gene:ENSG00000227927 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000605675 havana:sense_intronic chromosome:GRCh37:20:14607559:14617170:1 gene:ENSG00000227927 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr20	 14607559	 14608133	+	ENSG00000227927	ENST00000605675	NA	NA	MACROD2	NA	chr20:14597559-14627170	inner
LNCA_21_P0003804	0.8859048	A	0.8857447	A	1.00011097902132	0	lncRNA	TCONS_00008670	NA	NA	NA	NA	XLOC_004188	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004188), lincRNA [TCONS_00008670]"	chr4:181448786-181448727	hs|4q34.3	Agilent_HUMAN_G3V2	TCONS_00008670	TCONS_00008670	chr4	181448727	181448786	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7266_PI429285431	0.8967157	A	0.908283	A	0.992014215774907	0	lncRNA	8057-1_{1..353}	"transcript_id ""ENST00000363261.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000363261.1"" | genecode_v17"	chr9	109442258	109442610	+	ENSG00000200131.1	ENST00000363261.1	RN7SKP77	RN7SKP77-201	NA	NA	NA	inter
CUST_29629_PI429285431	4.1948757	P	4.655205	P	0.72682034053558	0	lncRNA	31390-1_{1..544}	n333190|AF436089|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079647_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079647_07|-0.6654270|-0.2254344	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333190|AF436089|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079647_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079647_07|-0.6654270|-0.2254344	chr6	  1096153	  1096696	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001591	1.2400289	A	0.8874112	A	1.27687535494676	0	lncRNA	TCONS_00001705	NA	NA	NA	NA	XLOC_001065	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001065), lincRNA [TCONS_00001705]"	chr1:161259365-161259306	hs|1q23.3	Agilent_HUMAN_G3V2	TCONS_00001705	TCONS_00001705	chr1	161259306	161259365	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002890	0.88806677	A	0.8881321	A	0.999954717719967	0	lncRNA	ENST00000487827	NA	NA	NA	NA	XLOC_003291	NA	ENST00000487827	NA	NA	"BROAD Institute lincRNA (XLOC_003291), lincRNA [TCONS_00005850]"	chr3:152879456-152874455	hs|3q25.2	Agilent_HUMAN_G3V2	ENST00000487827	ENST00000487827	chr3	152874455	152879456	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14210_PI429285431	0.8873892	A	1.3472544	A	0.727054188696166	0	lncRNA	15863-1_{1..736}	lnc-C5orf42-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf42-1:1	chr5	 37072107	 37072842	-	lnc-C5orf42-1	lnc-C5orf42-1:1	XLOC_004787	linc-RANBP3L-5	NIPBL	NA	chr5:37062107-37065921	inter
CUST_36918_PI429285431	3.8402336	P	4.216212	P	0.770582645419304	0	lncRNA	38076-1_{1..2401}	n345390|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_939|NULL|-1.2962000|-0.1977938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n345390|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_939|NULL|-1.2962000|-0.1977938	chr20	 57392058	 57394458	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3498_PI429285431	3.7961833	P	4.2325525	P	0.738992076019457	0	lncRNA	3469-1_{1..204}	"transcript_id ""ENST00000430058.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430058.1"" | genecode_v17"	chr9	100568217	100568420	-	ENSG00000236130.1	ENST00000430058.1	RP11-23B15.1	RP11-23B15.1-001	FOXE1	NA	chr9:100558217-100582290	inter
LNCA_21_P0007198	0.8894654	A	0.88990533	A	0.999695110249186	0	lncRNA	TCONS_00019280	NA	NA	NA	NA	XLOC_009113	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009113), lincRNA [TCONS_00019280]"	chr11:41881313-41881372	hs|11p12	Agilent_HUMAN_G3V2	TCONS_00019280	TCONS_00019280	chr11	 41881313	 41881372	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33216_PI429285431	1.5510968	A	2.0996873	A	0.683687758943379	0	lncRNA	34806-1_{1..3000}	n339913|AL512695|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2362|NULL|-1.3214300|-0.3940546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339913|AL512695|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2362|NULL|-1.3214300|-0.3940546	chr18	 67510568	 67513567	+	NA	NA	NA	NA	DOK6	NA	chr18:67500568-67516323	inner
CUST_20339_PI429285431	0.8861138	A	0.8924826	A	0.995595213888663	0	lncRNA	21981-1_{1..242}	lnc-DYNLL2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DYNLL2-2:2	chr17	 55992377	 55992618	+	lnc-DYNLL2-2	lnc-DYNLL2-2:2	ENSG00000264914.1	RP11-343K8.3	NA	NA	NA	inner
LNCA_21_P0001851	0.8896877	A	0.89044577	A	0.999474683943653	0	lncRNA	ENST00000453451	NA	NA	NA	NA	XLOC_001425	NA	ENST00000453451	NA	NA	"BROAD Institute lincRNA (XLOC_001425), lincRNA [TCONS_00002871]"	chr2:35388095-35388154	hs|2p22.3	Agilent_HUMAN_G3V2	ENST00000453451	ENST00000453451	chr2	 35388095	 35388154	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003008	1.0336571	A	0.92645603	A	1.0771364874332	0	lncRNA	TCONS_00006154	NA	NA	NA	NA	XLOC_002760	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002760), lincRNA [TCONS_00006154]"	chr3:112884146-112884205	hs|3q13.2	Agilent_HUMAN_G3V2	TCONS_00006154	TCONS_00006154	chr3	112884146	112884205	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8904_PI429285431	1.1534691	A	1.2448566	A	0.938619605360926	0	lncRNA	10440-1_{1..628}	lnc-CYB5R2-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYB5R2-3:9	chr11	  7456378	  7457005	-	lnc-CYB5R2-3	lnc-CYB5R2-3:9	ENSG00000251364	ENSG00000251364.2	SYT9	NA	chr11:7446378-7466861	inner
CUST_39432_PI429285431	0.8941608	A	0.9068172	A	0.991265620297114	0	lncRNA	40381-13_{36001..37567}	n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	chr13	 19444542	 19446108	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_6233_PI429285431	1.3350961	A	0.93029004	A	1.32391092645803	0	lncRNA	6158-1_{1..339}	"transcript_id ""ENST00000454647.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454647.1"" | genecode_v17"	chr18	 61747536	 61747874	-	ENSG00000179676.6	ENST00000454647.1	LINC00305	LINC00305-002	NA	NA	NA	inter
CUST_28458_PI429285431	0.919472	A	0.91764504	A	1.00126715433548	0	lncRNA	30119-1_{1..2618}	n325786|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000125960|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000125960|-0.8648450|-0.3123693	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325786|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000125960|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000125960|-0.8648450|-0.3123693	chr13	 29575314	 29577931	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46658_PI429285431	1.2709546	A	1.5583913	A	0.819356553019906	0	lncRNA	50828-1_{1..1060}	"gi|259013221|ref|NR_028471.1| Homo sapiens apolipoprotein O pseudogene (LOC644649), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|259013221|ref|NR_028471.1| Homo sapiens apolipoprotein O pseudogene (LOC644649), non-coding RNA"	Chr16	 59788036	 59789095	-	644649	NR_028471.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0006765	4.1860847	P	4.658028	P	0.720992771231139	0	lncRNA	ENST00000441001	NA	NA	NA	NA	XLOC_008833	NA	ENST00000441001	NA	NA	"BROAD Institute lincRNA (XLOC_008833), lincRNA [TCONS_00017987]"	chr10:63541585-63541526	hs|10q21.2	Agilent_HUMAN_G3V2	ENST00000441001	ENST00000441001	chr10	 63541526	 63541585	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12531_PI429285431	3.788163	P	3.559504	P	1.1717452934869	0	lncRNA	14142-1_{1..678}	lnc-FAM46D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM46D-1:1	chrX	 80067610	 80068287	+	lnc-FAM46D-1	lnc-FAM46D-1:1	XLOC_008020	linc-SH3BGRL	BRWD3	NA	chrX:80057610-80065233	inter
CUST_46043_PI429285431	8.20638	P	7.40578	P	1.74182538078841	0	lncRNA	50320-1_{1..1952}	"gi|344030199|ref|NR_045019.1| Homo sapiens LETM1 domain containing 1 (LETMD1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|344030199|ref|NR_045019.1| Homo sapiens LETM1 domain containing 1 (LETMD1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NR_045019.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003229	2.8882391	A	3.054367	A	0.891231481582681	0	lncRNA	TCONS_00006841	NA	NA	NA	NA	XLOC_002647	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002647), lincRNA [TCONS_00006841]"	chr3:50300479-50304747	hs|3p21.31	Agilent_HUMAN_G3V2	TCONS_00006841	TCONS_00006841	chr3	 50300479	 50304747	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12237_PI429285431	1.8609527	A	2.480129	A	0.651042531322802	0	lncRNA	13843-1_{1..542}	lnc-C22orf26-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C22orf26-2:2	chr22	 46440489	 46441030	-	lnc-C22orf26-2	lnc-C22orf26-2:2	XLOC_014404	linc-WNT7B-2	C22orf26	NA	chr22:46446339-46450024	inter
CUST_46523_PI429285431	1.0566934	A	1.3851459	A	0.796390270017933	0	lncRNA	50713-1_{1..1610}	"gi|194097384|ref|NR_004847.2| Homo sapiens ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2 (UBE2Q2P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|194097384|ref|NR_004847.2| Homo sapiens ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2 (UBE2Q2P2), non-coding RNA"	Chr15	 82647286	 82648895	+	100134869	NR_004847.2	NA	NA	NA	NA	NA	inter
CUST_3349_PI429285431	3.5426428	P	3.492752	P	1.03518656587377	0	lncRNA	3324-1_{1..294}	"transcript_id ""ENST00000520606.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520606.1"" | genecode_v17"	chr8	142288327	142288620	+	ENSG00000254197.1	ENST00000520606.1	RP11-10J21.5	RP11-10J21.5-001	NA	NA	NA	inter
CUST_14466_PI429285431	0.92292106	A	0.9011644	A	1.01519485307022	0	lncRNA	16129-1_{1..534}	lnc-HRH4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HRH4-1:1	chr18	 22070614	 22071147	+	lnc-HRH4-1	lnc-HRH4-1:1	XLOC_012642	linc-PSMA8-5	NA	NA	NA	inter
CUST_19840_PI429285431	0.90290916	A	0.9247793	A	0.984955096775171	0	lncRNA	21497-1_{1..716}	lnc-PAWR-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAWR-2:1	chr12	 79439331	 79440046	-	lnc-PAWR-2	lnc-PAWR-2:1	ENSG00000257191.1	RP11-390N6.1	SYT1	NA	chr12:79429331-79449424	inner
CUST_45372_PI429285431	1.1283247	A	1.1574497	A	0.980014499877304	0	lncRNA	49806-2_{3001..4803}	"gi|334848109|ref|NR_037638.2| Homo sapiens solute carrier family 28 (sodium-coupled nucleoside transporter), member 3 (SLC28A3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|334848109|ref|NR_037638.2| Homo sapiens solute carrier family 28 (sodium-coupled nucleoside transporter), member 3 (SLC28A3), transcript variant 3, non-coding RNA"	Chr9	 86893765	 86895567	-	64078	NR_037638.2	NA	NA	NA	NA	NA	inter
CUST_4789_PI429285431	0.8905305	A	1.1198175	A	0.853056379961068	0	lncRNA	4733-1_{1..257}	"transcript_id ""ENST00000553827.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553827.1"" | genecode_v17"	chr14	 44464984	 44465240	-	ENSG00000258969.1	ENST00000553827.1	RP11-305B6.3	RP11-305B6.3-001	NA	NA	NA	inter
CUST_12946_PI429285431	0.89135486	A	0.90234005	A	0.992414562274887	0	lncRNA	14574-1_{1..468}	lnc-BPIFA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BPIFA2-1:1	chr20	 31733727	 31734194	+	lnc-BPIFA2-1	lnc-BPIFA2-1:1	XLOC_013507	linc-C20orf70	NA	NA	NA	inter
CUST_32963_PI429285431	0.9048696	A	0.9061875	A	0.999086918443629	0	lncRNA	34580-1_{1..939}	n339638|BC029507|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2082|NULL|3.5861500|-0.0554764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339638|BC029507|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2082|NULL|3.5861500|-0.0554764	chr3	147113643	147114581	-	NA	NA	NA	NA	ZIC1	NA	chr3:147127181-147133920	inner
CUST_1888_PI429285431	0.899142	A	0.914142	A	0.989656656415207	0	lncRNA	1879-1_{1..347}	"transcript_id ""ENST00000510967.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510967.1"" | genecode_v17"	chr4	132948330	132948676	-	ENSG00000249463.1	ENST00000510967.1	RP11-1E22.1	RP11-1E22.1-001	NA	NA	NA	inter
CUST_1022_PI429285431	1.5992641	A	3.4104245	P	0.284961634147404	0	lncRNA	1011-1_{1..735}	"transcript_id ""ENST00000568189.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568189.1"" | genecode_v17"	chr2	111003168	111003902	+	ENSG00000261760.2	ENST00000568189.1	RP11-1223D19.1	RP11-1223D19.1-009	LOC100287119	NA	chr2:111025028-111045083	inter
CUST_18329_PI429285431	1.335395	A	0.91636217	A	1.33703092056391	0	lncRNA	20058-1_{1..932}	lnc-C3orf32-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C3orf32-2:6	chr3	  8543157	  8544088	-	lnc-C3orf32-2	lnc-C3orf32-2:6	ENSG00000227110	AC087859.1	LMCD1	NA	chr3:8543511-8553284	inter
CUST_51674_PI429285431	3.350538	P	2.9962938	A	1.27831572097249	0	lncRNA	55236-1_{1..938}	hg19_lincRNAsTranscripts_TCONS_l2_00011430 range=chr17:66136574-66140947 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011430 range=chr17:66136574-66140947 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 66136574	 66137511	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15360_PI429285431	0.88162893	A	1.670871	A	0.578648008919844	0	lncRNA	17044-1_{1..3000}	lnc-AL445989.1-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL445989.1-10:1	chr13	 66546596	 66549595	+	lnc-AL445989.1-10	lnc-AL445989.1-10:1	XLOC_010415	linc-C13orf34-10	NA	NA	NA	inter
CUST_33178_PI429285431	1.6559075	A	3.003349	A	0.392988363606711	0	lncRNA	34771-1_{1..2111}	n339869|AK095226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2317|NULL|-0.4019970|-0.1881100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339869|AK095226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2317|NULL|-0.4019970|-0.1881100	chr18	 45553257	 45555367	-	NA	NA	NA	NA	ZBTB7C	NA	chr18:45553639-45565546	inner
CUST_28088_PI429285431	0.90034354	A	0.9859892	A	0.942362698971114	0	lncRNA	29709-1_{1..726}	n325359|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324850|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324850|-1.1402900|-0.2046696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325359|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324850|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324850|-1.1402900|-0.2046696	chr2	 28785322	 28786047	-	NA	NA	NA	NA	PLB1	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50chr2:28775322-28822575"	NA	inner
LNCA_21_P0011594	3.137737	P	3.180311	P	0.970921121713485	0	lncRNA	TCONS_l2_00010813	NA	NA	NA	NA	XLOC_l2_006101	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005804), lincRNA [TCONS_l2_00010813]"	chr17:44325484-44336960	hs|17q21.31	Agilent_HUMAN_G3V2	TCONS_l2_00010813	TCONS_l2_00010813	chr17	 44325484	 44336960	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30523_PI429285431	0.8924395	A	0.9041635	A	0.991906472848373	0	lncRNA	32303-1_{1..490}	n335681|CR616786|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000295981_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000295981_08|-1.3193300|-0.4575352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335681|CR616786|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000295981_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000295981_08|-1.3193300|-0.4575352	chr6	  2003922	  2004411	-	NA	NA	NA	NA	GMDS	NA	chr6:1993922-2014412	inner
CUST_14859_PI429285431	1.0687087	A	1.0642807	A	1.00307397070344	0	lncRNA	16522-1_{1..514}	lnc-SOCS6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOCS6-1:2	chr18	 68007036	 68007549	+	lnc-SOCS6-1	lnc-SOCS6-1:2	XLOC_012709	linc-C18orf55-9	SOCS6	NA	chr18:67997036-67997434	inter
CUST_5341_PI429285431	0.8859063	A	0.8939075	A	0.994469341496526	0	lncRNA	5279-1_{1..571}	"transcript_id ""ENST00000558860.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558860.1"" | genecode_v17"	chr15	 96592504	 96593074	-	ENSG00000259702.1	ENST00000558860.1	RP11-236L14.1	RP11-236L14.1-001	NA	NA	NA	inter
CUST_12109_PI429285431	0.89195955	A	0.89206684	A	0.999925635004211	0	lncRNA	13706-1_{1..568}	lnc-HS3ST4-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HS3ST4-1:5	chr16	 26351912	 26352479	+	lnc-HS3ST4-1	lnc-HS3ST4-1:5	XLOC_011679	linc-C16orf82	NA	NA	NA	inter
CUST_36272_PI429285431	5.687203	P	5.881337	P	0.874097428965262	0	lncRNA	37509-1_{1..3000}	n344803|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_352|NULL|-1.3326500|-0.2229922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344803|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_352|NULL|-1.3326500|-0.2229922	chr19	 28262749	 28265748	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11226_PI429285431	0.8834951	A	0.88463223	A	0.999212112093375	0	lncRNA	12784-1_{1..240}	lnc-JAG1-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JAG1-5:4	chr20	 11858902	 11859141	-	lnc-JAG1-5	lnc-JAG1-5:4	XLOC_013652	linc-JAG1-2	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-22.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60"	NA	inter
CUST_26124_PI429285431	0.90248847	A	0.9011005	A	1.00096253042758	0	lncRNA	27635-1_{1..400}	lnc-CDKAL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CDKAL1-1:1	chr6	 20440188	 20440587	+	lnc-CDKAL1-1	lnc-CDKAL1-1:1	ENSG00000224707.1	E2F3-IT1	E2F3	NA	chr6:20430188-20450409	inner
LNCA_21_P0002283	0.88775486	A	0.894158	A	0.995571516342205	0	lncRNA	TCONS_00003842	NA	NA	NA	NA	XLOC_001648	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001648), lincRNA [TCONS_00003842]"	chr2:123006229-123006288	hs|2q14.3	Agilent_HUMAN_G3V2	TCONS_00003842	TCONS_00003842	chr2	123006229	123006288	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30066_PI429285431	6.338472	P	5.866329	P	1.38716845851985	0	lncRNA	31835-1_{1..250}	n334582|U69701|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221082|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221082|1.3111100|-0.3837833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334582|U69701|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221082|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221082|1.3111100|-0.3837833	chr6	 64288841	 64289090	+	NA	NA	NA	NA	PTP4A1	NA	chr6:64281920-64293489	inner
CUST_36476_PI429285431	0.90063775	A	1.0903525	A	0.876779061139557	0	lncRNA	37681-1_{1..2660}	n344981|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_530|NULL|-1.4708300|-0.3382075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344981|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_530|NULL|-1.4708300|-0.3382075	chr8	122077183	122079842	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006487	0.8857361	A	0.97973794	A	0.936920251932182	0	lncRNA	TCONS_00017152	NA	NA	NA	NA	XLOC_007950	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007950), lincRNA [TCONS_00017152]"	chrX:36219519-36219578	hs|Xp21.1	Agilent_HUMAN_G3V2	TCONS_00017152	TCONS_00017152	chrX	 36219519	 36219578	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37393_PI429285431	6.8418646	P	6.931339	P	0.939865096769429	0	lncRNA	38497-1_{1..1139}	n345845|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1394|NULL|-1.2709700|-0.2052215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345845|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1394|NULL|-1.2709700|-0.2052215	chr2	  8279455	  8280593	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3241661	4.3035836	P	5.5356517	P	0.425706758626566	0	lncRNA	XR_109642	XR_109642	XR_109642	   388780	NA	LOC388780	uncharacterized LOC388780	ENST00000411839	THC2757413	NA	"PREDICTED: Homo sapiens hypothetical LOC388780 (LOC388780), miscRNA [XR_109642]"	chr20:2193727-2193786	hs|20p13	Agilent_HUMAN_G3V2	XR_109642	XR_109642	chr20	  2193727	  2193786	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50221_PI429285431	4.18069	P	4.6253858	P	0.734739224019697	0	lncRNA	53945-1_{1..610}	hg19_lincRNAsTranscripts_TCONS_l2_00029319 range=chr9:67254267-67288106 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029319 range=chr9:67254267-67288106 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 67254267	 67254876	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011682	2.0797215	A	0.8860922	A	2.28727415657817	0	lncRNA	TCONS_l2_00012394	NA	NA	NA	NA	XLOC_l2_006651	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006651), lincRNA [TCONS_l2_00012394]"	chr19:21677119-21677178	hs|19p12	Agilent_HUMAN_G3V2	TCONS_l2_00012394	TCONS_l2_00012394	chr19	 21677119	 21677178	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22593_PI429285431	1.3258876	A	1.2916558	A	1.02401141667873	0	lncRNA	24177-1_{1..558}	lnc-ZBTB25-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZBTB25-3:1	chr14	 65007035	 65007592	-	lnc-ZBTB25-3	lnc-ZBTB25-3:1	ENSG00000259116.1	RP11-973N13.4	C14orf50	NA	chr14:65016620-65017086	inter
CUST_5259_PI429285431	5.5526423	P	4.7583256	P	1.73425578857787	0	lncRNA	5199-1_{1..529}	"transcript_id ""ENST00000561560.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561560.1"" | genecode_v17"	chr15	 79705700	 79706228	+	ENSG00000261712.1	ENST00000561560.1	RP11-358L4.1	RP11-358L4.1-001	NA	NA	NA	inter
CUST_35037_PI429285431	0.89803517	A	0.9293976	A	0.978495804412348	0	lncRNA	36448-2_{3001..3187}	n341978|AL133569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4459|NULL|-0.1638380|-0.3483007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341978|AL133569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4459|NULL|-0.1638380|-0.3483007	chr12	 82909455	 82909641	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-27.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80"	NA	inter
CUST_9152_PI429285431	4.4990697	P	5.087102	P	0.665249626329951	0	lncRNA	10671-1_{1..661}	lnc-AC009336.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC009336.1-2:3	chr2	177053147	177053807	-	lnc-AC009336.1-2	lnc-AC009336.1-2:3	ENSG00000224189	AC009336.23	HOXD1	NA	chr2:177053307-177055635	inter
CUST_34102_PI429285431	0.90109044	A	1.6532993	A	0.593693877324762	0	lncRNA	35626-1_{1..914}	n340926|BC033940|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3391|NULL|-1.2081800|-0.2686230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340926|BC033940|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3391|NULL|-1.2081800|-0.2686230	chr17	 80671784	 80672697	-	NA	NA	NA	NA	FN3KRP	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80chr17:80674582-80684129"	NA	inter
CUST_8215_PI429285431	1.3929074	A	0.8882331	A	1.41880301385893	0	lncRNA	9807-1_{1..468}	lnc-C2orf69-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C2orf69-3:2	chr2	200341200	200341667	+	lnc-C2orf69-3	lnc-C2orf69-3:2	ENSG00000225953	AC017096.1	SATB2	NA	chr2:200331200-200335989	inter
CUST_8983_PI429285431	0.88744766	A	0.8810792	A	1.00442403737973	0	lncRNA	10513-1_{1..1136}	lnc-AGXT2L1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-AGXT2L1-1:2	chr4	109541464	109542599	-	lnc-AGXT2L1-1	lnc-AGXT2L1-1:2	ENSG00000234492	RP11-462C24.1	RPL34	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80chr4:109541722-109551585"	NA	inter
CUST_34335_PI429285431	0.89481866	A	0.8853941	A	1.00655399120948	0	lncRNA	35828-1_{1..525}	n341200|AF086401|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3666|NULL|-1.1586100|-0.3364278	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341200|AF086401|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3666|NULL|-1.1586100|-0.3364278	chr7	 20179587	 20180111	-	NA	NA	NA	NA	MACC1	NA	chr7:20174278-20190103	inner
CUST_7664_PI429285431	0.8972999	A	0.90713894	A	0.993203299925105	0	lncRNA	9296-1_{1..1664}	lnc-MEF2C-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MEF2C-2:2	chr5	 87980475	 87982138	-	lnc-MEF2C-2	lnc-MEF2C-2:2	ENSG00000245526	CTC-547D20.1	NA	NA	NA	inter
CUST_9283_PI429285431	0.8794776	A	0.88172936	A	0.998440416321268	0	lncRNA	10789-1_{1..264}	lnc-SEC23IP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEC23IP-1:2	chr10	121946630	121946893	+	lnc-SEC23IP-1	lnc-SEC23IP-1:2	XLOC_008642	linc-PPAPDC1A	NA	NA	NA	inter
CUST_43942_PI429285431	7.078244	P	7.07161	P	1.00460892697758	0	lncRNA	48652-1_{1..786}	"gi|215272366|ref|NR_024530.1| Homo sapiens ribosomal protein L23a pseudogene 7 (RPL23AP7), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|215272366|ref|NR_024530.1| Homo sapiens ribosomal protein L23a pseudogene 7 (RPL23AP7), transcript variant 4, non-coding RNA"	Chr2	114379303	114380088	-	118433	NR_024530.1	NA	NA	NA	NA	NA	inter
CUST_25100_PI429285431	1.2180471	A	0.89866644	A	1.24779476338099	0	lncRNA	26637-1_{1..566}	lnc-BHLHE41-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BHLHE41-1:1	chr12	 26279332	 26279897	-	lnc-BHLHE41-1	lnc-BHLHE41-1:1	ENSG00000256894.1	RP11-283G6.3	BHLHE41	NA	chr12:26272959-26278003	inter
CUST_38530_PI429285431	2.1488736	A	2.3646164	A	0.861102689851471	0	lncRNA	39542-1_{1..1340}	n383202|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002iuo.2||-1.1110300|-0.4065853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383202|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002iuo.2||-1.1110300|-0.4065853	chr17	 54305682	 54307021	+	NA	NA	NA	NA	ANKFN1	NA	chr17:54295682-54317022	inner
CUST_22255_PI429285431	0.88178104	A	2.2916749	A	0.376339373363509	0	lncRNA	23856-1_{1..341}	lnc-PACRGL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PACRGL-2:1	chr4	 21317905	 21318245	+	lnc-PACRGL-2	lnc-PACRGL-2:1	ENSG00000250243.2	RP11-120A1.1	KCNIP4	NA	chr4:21307905-21328108	inner
CUST_42409_PI429285431	2.2497356	A	2.3131418	A	0.957001970244117	0	lncRNA	45115-1_{1..137}	ENST00000390904 ncrna:snoRNA chromosome:GRCh37:17:8232901:8233037:1 gene:ENSG00000212206 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390904 ncrna:snoRNA chromosome:GRCh37:17:8232901:8233037:1 gene:ENSG00000212206 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	  8232901	  8233037	+	ENSG00000212206	ENST00000390904	NA	NA	ARHGEF15	NA	chr17:8222901-8225834	inter
CUST_7121_PI429285431	0.88174415	A	0.88284993	A	0.999233825372467	0	lncRNA	7058-1_{1..436}	"transcript_id ""ENST00000438525.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438525.2"" | genecode_v17"	chrX	145891302	145891737	+	ENSG00000235699.2	ENST00000438525.2	CXorf51B	CXorf51B-001	LOC100133053	NA	chrX:145891308-145891927	inner
CUST_25691_PI429285431	3.9914694	P	4.172724	P	0.881935711618332	0	lncRNA	27220-1_{1..770}	lnc-ATXN7-7:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATXN7-7:7	chr3	 64572493	 64573262	+	lnc-ATXN7-7	lnc-ATXN7-7:7	ENSG00000241158.1	ADAMTS9-AS1	ADAMTS9	NA	chr3:64562493-64582573	inner
LNCA_21_P0002246	1.0915825	A	0.88694525	A	1.15239655276973	0	lncRNA	TCONS_00003748	NA	NA	NA	NA	XLOC_001545	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001545), lincRNA [TCONS_00003748]"	chr2:81928475-81928534	hs|2p12	Agilent_HUMAN_G3V2	TCONS_00003748	TCONS_00003748	chr2	 81928475	 81928534	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35873_PI429285431	3.8793015	P	3.957996	P	0.946914125194561	0	lncRNA	37264-1_{1..2361}	n344537|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_85|NULL|-1.6326200|-0.3084949	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344537|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_85|NULL|-1.6326200|-0.3084949	chr2	  8017835	  8020195	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49724_PI429285431	11.572902	P	11.305176	P	1.20390871037291	0	lncRNA	53498-1_{1..1045}	hg19_lincRNAsTranscripts_TCONS_l2_00026452 range=chr7:27495996-27498498 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026452 range=chr7:27495996-27498498 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 27495996	 27497040	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42223_PI429285431	4.8125343	P	5.419573	P	0.656542950845212	0	lncRNA	44330-1_{1..98}	ENST00000384974 ncrna:miRNA chromosome:GRCh37:19:14640355:14640452:1 gene:ENSG00000207707 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384974 ncrna:miRNA chromosome:GRCh37:19:14640355:14640452:1 gene:ENSG00000207707 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 14640355	 14640452	+	ENSG00000207707	ENST00000384974	NA	NA	TECR	NA	chr19:14640379-14650452	inter
CUST_50882_PI429285431	8.12093	P	8.283463	P	0.893455016699665	0	lncRNA	54525-1_{1..1085}	hg19_lincRNAsTranscripts_TCONS_l2_00006099 range=chr12:8385026-8395539 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006099 range=chr12:8385026-8395539 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  8385026	  8386110	-	NA	NA	NA	NA	FAM90A1	NA	chr12:8375026-8380214	inter
CUST_8783_PI429285431	2.471571	A	5.071493	P	0.164947406566264	0	lncRNA	10323-1_{1..645}	lnc-SPRY1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SPRY1-2:2	chr4	124851403	124852047	+	lnc-SPRY1-2	lnc-SPRY1-2:2	ENSG00000249464	RP11-93L9.1	NA	NA	NA	inter
CUST_35835_PI429285431	4.8347106	P	5.3342443	P	0.707335365311563	0	lncRNA	37237-1_{1..2366}	n344508|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_56|NULL|-1.3170700|-0.2954347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344508|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_56|NULL|-1.3170700|-0.2954347	chr9	   470304	   472669	+	NA	NA	NA	NA	DOCK8	NA	chr9:460304-465259	inner
CUST_20064_PI429285431	3.4375386	P	3.744143	P	0.808542548074429	0	lncRNA	21715-1_{1..801}	lnc-RP11-778D12.2.1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-778D12.2.1-4:3	chr8	107072609	107073409	-	lnc-RP11-778D12.2.1-4	lnc-RP11-778D12.2.1-4:3	ENSG00000251003.2	RP11-152P17.2	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
CUST_28533_PI429285431	6.868845	P	7.0223584	P	0.899058314737236	0	lncRNA	30204-1_{1..475}	n325881|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050570|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050570|-1.0601400|-0.1282396	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325881|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050570|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050570|-1.0601400|-0.1282396	chr10	119311584	119312058	-	NA	NA	NA	NA	EMX2	NA	chr10:119301956-119309057	inter
CUST_49815_PI429285431	2.956656	A	3.4755373	P	0.697912801570615	0	lncRNA	53570-1_{1..879}	hg19_lincRNAsTranscripts_TCONS_l2_00025937 range=chr7:64029793-64033609 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025937 range=chr7:64029793-64033609 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 64029793	 64030671	+	NA	NA	NA	NA	ZNF680	"hg19_refFlat_IGLON5:range=chr19:51815102-518320135'pad=0,hg19_refFlat_IGLON5:range=chr19:51815102-518320135'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.30chr7:64019793-64023505"	NA	inter
CUST_48026_PI429285431	3.6431987	P	4.0261126	P	0.766887096271484	0	lncRNA	51908-1_{1..2525}	"gi|410173669|ref|XR_172335.1| PREDICTED: Homo sapiens uncharacterized protein FLJ32154 (FLJ32154), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173669|ref|XR_172335.1| PREDICTED: Homo sapiens uncharacterized protein FLJ32154 (FLJ32154), misc_RNA"	NA	NA	NA	NA	NA	XR_172335.1	NA	NA	NA	NA	NA	Unknown
CUST_23381_PI429285431	2.9924014	P	3.0638964	P	0.951651333428372	0	lncRNA	24949-1_{1..553}	lnc-PPM1D-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPM1D-1:2	chr17	 58628098	 58628650	+	lnc-PPM1D-1	lnc-PPM1D-1:2	ENSG00000259349.1	RP11-15E18.1	NA	NA	NA	inter
CUST_18917_PI429285431	2.5755436	A	1.1770885	A	2.6361913622635	0	lncRNA	20608-1_{1..742}	lnc-SLC39A11-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC39A11-2:2	chr17	 70137826	 70138567	-	lnc-SLC39A11-2	lnc-SLC39A11-2:2	ENSG00000234899	AC005152.2	NA	NA	NA	inter
LNCA_21_P0007345	3.998959	P	4.2240825	P	0.855521786737359	0	lncRNA	TCONS_00019625	NA	NA	NA	NA	XLOC_009426	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009426), lincRNA [TCONS_00019625]"	chr11:44542469-44542410	hs|11p11.2	Agilent_HUMAN_G3V2	TCONS_00019625	TCONS_00019625	chr11	 44542410	 44542469	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4865_PI429285431	0.8839221	A	1.159917	A	0.825880584460232	0	lncRNA	4808-1_{1..572}	"transcript_id ""ENST00000556556.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556556.1"" | genecode_v17"	chr14	 64825486	 64826057	-	ENSG00000258809.1	ENST00000556556.1	CTD-2555O16.1	CTD-2555O16.1-001	MTHFD1	NA	chr14:64854759-64856036	inter
CUST_39362_PI429285431	3.5881608	P	3.336729	A	1.19038792723443	0	lncRNA	40326-1_{1..1084}	n386463|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lrk.1||0.6775670|-0.1888810	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386463|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lrk.1||0.6775670|-0.1888810	chr8	  7143732	  7144815	-	NA	NA	NA	NA	ZNF705G	NA	chr8:7189909-7220490	inter
CUST_50626_PI429285431	0.8928437	A	0.88814926	A	1.00325923765293	0	lncRNA	54310-1_{1..1529}	hg19_lincRNAsTranscripts_TCONS_l2_00003421 range=chr10:18942634-18948218 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003421 range=chr10:18942634-18948218 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 18942634	 18944162	-	NA	NA	NA	NA	NSUN6	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80chr10:18932634-18940550"	NA	inter
CUST_8370_PI429285431	3.8809638	P	4.9119673	P	0.489369637979131	0	lncRNA	9948-1_{1..597}	lnc-PTS-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PTS-1:5	chr11	112164450	112165046	+	lnc-PTS-1	lnc-PTS-1:5	ENSG00000250303	RP11-356J5.12	NA	NA	NA	inter
CUST_11458_PI429285431	0.893257	A	0.9055831	A	0.991492593086393	0	lncRNA	13025-1_{1..3000}	lnc-CDH5-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH5-4:1	chr16	 65172004	 65175003	+	lnc-CDH5-4	lnc-CDH5-4:1	XLOC_011753	linc-CDH5-2	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
CUST_9647_PI429285431	1.262193	A	0.8833871	A	1.30026519727224	0	lncRNA	11165-1_{1..397}	lnc-NADSYN1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NADSYN1-2:1	chr11	 70997789	 70998185	+	lnc-NADSYN1-2	lnc-NADSYN1-2:1	XLOC_009198	linc-NADSYN1-2	NA	NA	NA	inter
LNCA_21_P0010984	3.4422305	P	5.368846	P	0.263045541065992	0	lncRNA	XR_110921	XR_110921	XR_110921	NA	NA	LOC100505504	uncharacterized LOC100505504	NA	THC2640107	NA	"PREDICTED: Homo sapiens hypothetical LOC100505504 (LOC100505504), miscRNA [XR_110921]"	chr11:66178443-66184321	hs|11q13.2	Agilent_HUMAN_G3V2	XR_110921	XR_110921	chr11	 66178443	 66184321	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24230_PI429285431	0.8988083	A	0.9163558	A	0.987910670149008	0	lncRNA	25781-1_{1..2523}	lnc-RCSD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RCSD1-1:1	chr1	167599652	167602174	+	lnc-RCSD1-1	lnc-RCSD1-1:1	ENSG00000241666.1	RP3-455J7.4	RCSD1	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40chr1:167599474-167609911"	NA	inner
CUST_49955_PI429285431	1.0192213	A	0.89938927	A	1.08660834359878	0	lncRNA	53704-2_{3001..4109}	hg19_lincRNAsTranscripts_TCONS_l2_00026893 range=chr7:130565099-130582733 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026893 range=chr7:130565099-130582733 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	130568099	130569207	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30"	NA	inter
CUST_52003_PI429285431	2.8075557	A	3.0896254	A	0.822410335169727	0	lncRNA	55536-2_{3001..3559}	hg19_lincRNAsTranscripts_TCONS_l2_00016970 range=chr21:15033887-15050511 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016970 range=chr21:15033887-15050511 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr21	 15036887	 15037445	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48970_PI429285431	0.8921288	A	0.9085138	A	0.988707033167751	0	lncRNA	52809-1_{1..896}	hg19_lincRNAsTranscripts_TCONS_l2_00019680 range=chr3:193766674-193776285 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019680 range=chr3:193766674-193776285 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	193766674	193767569	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1629_PI429285431	8.108975	P	8.5594225	P	0.731815815672789	0	lncRNA	1614-1_{1..584}	"transcript_id ""ENST00000446521.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446521.1"" | genecode_v17"	chr3	195399478	195400061	+	ENSG00000242086.3	ENST00000446521.1	AC069513.3	AC069513.3-044	NA	NA	NA	inter
CUST_35736_PI429285431	0.8932514	A	1.2083048	A	0.803821237505445	0	lncRNA	37153-1_{1..1976}	n342904|AK001011|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5412|NULL|-1.0632100|-0.3229909	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342904|AK001011|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5412|NULL|-1.0632100|-0.3229909	chr12	115487519	115489494	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009336	0.9044819	A	0.926673	A	0.984735995706505	0	lncRNA	TCONS_00025700	NA	NA	NA	NA	XLOC_012528	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012528), lincRNA [TCONS_00025700]"	chr17:54614329-54614270	hs|17q22	Agilent_HUMAN_G3V2	TCONS_00025700	TCONS_00025700	chr17	 54614270	 54614329	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42975_PI429285431	3.8329184	P	4.027636	P	0.873743909973866	0	lncRNA	46120-1_{1..76}	ENST00000391230 ncrna:snoRNA chromosome:GRCh37:6:51329488:51329563:1 gene:ENSG00000212532 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391230 ncrna:snoRNA chromosome:GRCh37:6:51329488:51329563:1 gene:ENSG00000212532 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	 51329488	 51329563	+	ENSG00000212532	ENST00000391230	NA	NA	NA	NA	NA	inter
CUST_38114_PI429285431	0.8887749	A	0.9015582	A	0.991178432033847	0	lncRNA	39188-1_{1..3000}	n381200|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001eiw.1||0.2415650|-0.3432812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n381200|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001eiw.1||0.2415650|-0.3432812	chr1	142618798	142621797	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80"	NA	inter
CUST_30429_PI429285431	6.051705	P	6.5151024	P	0.72527629419188	0	lncRNA	32209-1_{1..649}	n335564|CR541691|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000268564|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000268564|3.8455800|-0.0473925	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335564|CR541691|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000268564|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000268564|3.8455800|-0.0473925	chr19	  8455301	  8455949	+	NA	NA	NA	NA	2-Mar	NA	chr19:8478187-8478439	inter
LNCA_21_P0004146	0.9065599	A	0.9271858	A	0.985804929287705	0	lncRNA	TCONS_00009708	NA	NA	NA	NA	XLOC_004894	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004894), lincRNA [TCONS_00009708]"	chr5:76393347-76393288	hs|5q13.3	Agilent_HUMAN_G3V2	TCONS_00009708	TCONS_00009708	chr5	 76393288	 76393347	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16283_PI429285431	0.90872407	A	0.9113491	A	0.998182122201695	0	lncRNA	17988-1_{1..645}	lnc-ZPLD1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZPLD1-2:2	chr3	102871138	102871782	+	lnc-ZPLD1-2	lnc-ZPLD1-2:2	XLOC_002743	linc-ALCAM-3	NA	NA	NA	inter
CUST_2805_PI429285431	3.2519476	P	3.3624933	P	0.926237645846785	0	lncRNA	2789-1_{1..710}	"transcript_id ""ENST00000585952.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585952.1"" | genecode_v17"	chr7	 35756412	 35757121	+	ENSG00000227544.3	ENST00000585952.1	AC018647.3	AC018647.3-005	NA	NA	NA	inter
CUST_12225_PI429285431	0.9038099	A	1.336097	A	0.741086012215889	0	lncRNA	13829-1_{1..691}	lnc-HRH4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HRH4-2:1	chr18	 22081177	 22081867	+	lnc-HRH4-2	lnc-HRH4-2:1	XLOC_012643	linc-PSMA8-4	NA	NA	NA	inter
LNCA_21_P0008981	2.5577784	A	2.1747944	A	1.30403627295331	0	lncRNA	TCONS_00024486	NA	NA	NA	NA	XLOC_011805	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011805), lincRNA [TCONS_00024486]"	chr16:84819018-84819077	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024486	TCONS_00024486	chr16	 84819018	 84819077	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47127_PI429285431	8.496111	P	9.087486	P	0.663710038489714	0	lncRNA	51208-1_{1..2152}	"gi|374248674|ref|NR_046202.1| Homo sapiens chromosome 19 open reading frame 47 (C19orf47), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374248674|ref|NR_046202.1| Homo sapiens chromosome 19 open reading frame 47 (C19orf47), transcript variant 3, non-coding RNA"	Chr19	 40826967	 40829118	-	126526	NR_046202.1	NA	NA	NA	NA	NA	inter
CUST_9179_PI429285431	0.8914121	A	0.9009961	A	0.993378894179991	0	lncRNA	10694-2_{3001..3075}	lnc-NDUFV1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDUFV1-2:1	chr11	 67550802	 67550876	+	lnc-NDUFV1-2	lnc-NDUFV1-2:1	ENSG00000248509	XLOC_009180	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00"	NA	inter
CUST_24797_PI429285431	2.8766654	A	3.6131918	P	0.600182683524229	0	lncRNA	26340-1_{1..188}	lnc-OPRL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OPRL1-1:1	chr20	 62688325	 62688512	+	lnc-OPRL1-1	lnc-OPRL1-1:1	ENSG00000237371.1	RP13-152O15.5	TCEA2	NA	chr20:62688439-62698437	inter
CUST_27731_PI429285431	3.601299	P	3.6804628	P	0.946606149831768	0	lncRNA	29313-1_{1..538}	n324947|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000259161|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000259161|-0.2467740|-0.3366181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324947|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000259161|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000259161|-0.2467740|-0.3366181	chr20	 50731373	 50731910	+	NA	NA	NA	NA	ZFP64	NA	chr20:50721373-50750526	inner
CUST_7645_PI429285431	1.5081748	A	1.6409237	A	0.912091900623159	0	lncRNA	9277-1_{1..523}	lnc-AMIGO2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AMIGO2-1:4	chr12	 47610167	 47610689	-	lnc-AMIGO2-1	lnc-AMIGO2-1:4	ENSG00000247774	RP11-493L12.2	FAM113B	NA	chr12:47610052-47620217	inner
CUST_17075_PI429285431	1.2043183	A	1.1246551	A	1.05677130641846	0	lncRNA	18784-1_{1..430}	lnc-LSM6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LSM6-1:1	chr4	147033657	147034086	+	lnc-LSM6-1	lnc-LSM6-1:1	XLOC_003721	linc-LSM6-1	NA	NA	NA	inter
LNCA_21_P0001479	0.8995652	A	1.490097	A	0.664098064971137	0	lncRNA	TCONS_00001425	NA	NA	NA	NA	XLOC_000741	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000741), lincRNA [TCONS_00001425]"	chr1:24524617-24524558	hs|1p36.11	Agilent_HUMAN_G3V2	TCONS_00001425	TCONS_00001425	chr1	 24524558	 24524617	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18219_PI429285431	1.5345609	A	1.214607	A	1.24829066027842	0	lncRNA	19954-1_{1..678}	lnc-KCNC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNC3-1:1	chr19	 50847930	 50848607	-	lnc-KCNC3-1	lnc-KCNC3-1:1	ENSG00000131401	NAPSB	NA	NA	NA	inter
CUST_51304_PI429285431	0.9016198	A	0.9188305	A	0.988141326764119	0	lncRNA	54908-1_{1..466}	hg19_lincRNAsTranscripts_TCONS_l2_00009004 range=chr15:33595778-33602798 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009004 range=chr15:33595778-33602798 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 33595778	 33596243	-	NA	NA	NA	NA	RYR3	NA	chr15:33603177-33612798	inter
CUST_8877_PI429285431	0.8897009	A	0.89276665	A	0.997877240279162	0	lncRNA	10414-1_{1..3000}	lnc-SRD5A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRD5A1-1:2	chr5	  6586341	  6589340	+	lnc-SRD5A1-1	lnc-SRD5A1-1:2	ENSG00000250056	CTD-2195M18.1	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70"	NA	inter
CUST_12447_PI429285431	5.5579367	P	5.379191	P	1.13189936764837	0	lncRNA	14059-2_{3001..5374}	lnc-PTPN14-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPN14-3:5	chr1	214016081	214018454	-	lnc-PTPN14-3	lnc-PTPN14-3:5	XLOC_001199	linc-ANGEL2-2	NA	"hg19_refFlat_TIGD1:range=chr2:233412817-2334145925'pad=0,hg19_refFlat_TIGD1:range=chr2:233412817-2334145925'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20"	NA	inter
CUST_51554_PI429285431	3.2513862	P	3.5405598	P	0.818370700832503	0	lncRNA	55119-1_{1..1201}	hg19_lincRNAsTranscripts_TCONS_l2_00011114 range=chr17:16721307-16725299 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011114 range=chr17:16721307-16725299 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 16721307	 16722507	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47319_PI429285431	1.0505064	A	1.3711634	A	0.800705155264885	0	lncRNA	51378-2_{3001..6000}	"gi|307574675|ref|NR_036633.1| Homo sapiens VAMP (vesicle-associated membrane protein)-associated protein B and C (VAPB), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|307574675|ref|NR_036633.1| Homo sapiens VAMP (vesicle-associated membrane protein)-associated protein B and C (VAPB), transcript variant 3, non-coding RNA"	Chr20	 56967175	 56970174	+	9217	NR_036633.1	NA	NA	NA	NA	NA	inter
CUST_28268_PI429285431	4.576395	P	4.777882	P	0.869653740510528	0	lncRNA	29903-1_{1..1150}	n325562|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000132249|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000132249|1.3514400|-0.3449669	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325562|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000132249|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000132249|1.3514400|-0.3449669	chr17	 19473355	 19474504	+	NA	NA	NA	NA	SLC47A1	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.22;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30chr17:19463355-19482346"	NA	inner
CUST_19349_PI429285431	4.097303	P	4.3529954	P	0.8375850517167	0	lncRNA	21015-1_{1..488}	lnc-HIGD1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HIGD1A-1:1	chr3	 42893867	 42894354	-	lnc-HIGD1A-1	lnc-HIGD1A-1:1	ENSG00000235288.1	RP11-70C1.3	CCBP2	NA	chr3:42883867-42903920	inner
LNCA_19_P00812627	0.8895012	A	1.4631658	A	0.671907900904433	0	lncRNA	TCONS_l2_00023282	NA	NA	NA	NA	XLOC_l2_012335	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012335), lincRNA [TCONS_l2_00023282]"	chr5:178245475-178245416	hs|5q35.3	Agilent_HUMAN_G3V2	TCONS_l2_00023282	TCONS_l2_00023282	chr5	178245416	178245475	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003656	0.888682	A	1.9999601	A	0.462883775228246	0	lncRNA	TCONS_00008264	NA	NA	NA	NA	XLOC_003706	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003706), lincRNA [TCONS_00008264]"	chr4:138874285-138874344	hs|4q28.3	Agilent_HUMAN_G3V2	TCONS_00008264	TCONS_00008264	chr4	138874285	138874344	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36699_PI429285431	1.1545017	A	0.8848997	A	1.20547522425712	0	lncRNA	37880-1_{1..1918}	n345187|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_736|NULL|-1.3140300|-0.3509208	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345187|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_736|NULL|-1.3140300|-0.3509208	chr12	 89932992	 89934909	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43033_PI429285431	5.569214	P	5.9814043	P	0.75148160763077	0	lncRNA	46563-1_{1..211}	ENST00000516375 ncrna:snRNA chromosome:GRCh37:3:62103974:62104184:-1 gene:ENSG00000252184 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516375 ncrna:snRNA chromosome:GRCh37:3:62103974:62104184:-1 gene:ENSG00000252184 gene_biotype:snRNA transcript_biotype:snRNA	chr3	 62103974	 62104184	-	ENSG00000252184	ENST00000516375	NA	NA	PTPRG	NA	chr3:62093974-62114184	inner
CUST_13301_PI429285431	4.8581915	P	4.8585873	P	0.999725689975811	0	lncRNA	14935-1_{1..514}	lnc-MTPAP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTPAP-2:1	chr10	 30569726	 30570239	-	lnc-MTPAP-2	lnc-MTPAP-2:1	XLOC_008765	linc-KIAA1462	NA	NA	NA	inter
CUST_41344_PI429285431	0.8826355	M	0.8871004	A	0.996909951212132	0	lncRNA	42411-1_{1..70}	ENST00000583183 ncrna:miRNA chromosome:GRCh37:3:109321675:109321744:1 gene:ENSG00000265956 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583183 ncrna:miRNA chromosome:GRCh37:3:109321675:109321744:1 gene:ENSG00000265956 gene_biotype:miRNA transcript_biotype:miRNA	chr3	109321675	109321744	+	ENSG00000265956	ENST00000583183	NA	NA	NA	NA	NA	inter
CUST_49787_PI429285431	4.212593	P	4.1827683	P	1.02088807138734	0	lncRNA	53544-1_{1..711}	hg19_lincRNAsTranscripts_TCONS_l2_00026602 range=chr7:57712077-57713315 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026602 range=chr7:57712077-57713315 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 57712077	 57712787	-	NA	NA	NA	NA	LOC100287633	NA	chr7:57710228-57712559	inter
CUST_29818_PI429285431	9.603731	P	9.525986	P	1.05536716233427	0	lncRNA	31581-1_{1..703}	n333537|BC050031|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000099103|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000099103|1.8615100|-0.0319382	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333537|BC050031|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000099103|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000099103|1.8615100|-0.0319382	chr11	 73019304	 73020006	+	NA	NA	NA	NA	P2RY6	NA	chr11:73009304-73009664	inner
CUST_32911_PI429285431	0.8897954	A	0.8999424	A	0.992991311780361	0	lncRNA	34536-1_{1..3000}	n339584|CR749507|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2028|NULL|1.0118100|-0.2492336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339584|CR749507|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2028|NULL|1.0118100|-0.2492336	chr20	 13360430	 13363429	-	NA	NA	NA	NA	TASP1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20chr20:13370036-13375292"	NA	inter
CUST_44200_PI429285431	2.8074064	A	1.8399119	A	1.95544166765742	0	lncRNA	48855-1_{1..3000}	"gi|292658759|ref|NR_033427.1| Homo sapiens ADP-ribosylation factor-like 13B (ARL13B), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|292658759|ref|NR_033427.1| Homo sapiens ADP-ribosylation factor-like 13B (ARL13B), transcript variant 5, non-coding RNA"	Chr3	 93698983	 93701982	+	200894	NR_033427.1	NA	NA	NA	NA	NA	inter
CUST_6793_PI429285431	0.90025365	A	1.0108159	A	0.926227020493069	0	lncRNA	6741-1_{1..469}	"transcript_id ""ENST00000424219.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424219.1"" | genecode_v17"	chr21	 20502841	 20503309	+	ENSG00000229289.1	ENST00000424219.1	AP000431.2	AP000431.2-001	NA	NA	NA	inter
CUST_14152_PI429285431	9.636477	P	9.639887	P	0.997639159292597	0	lncRNA	15803-1_{1..981}	lnc-CYP7B1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CYP7B1-3:1	chr8	 65324400	 65325380	-	lnc-CYP7B1-3	lnc-CYP7B1-3:1	XLOC_007102	linc-TTPA-1	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60"	NA	inter
CUST_7582_PI429285431	3.7126477	P	3.5767453	P	1.09877988132359	0	lncRNA	9217-1_{1..506}	lnc-RGS18-5:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGS18-5:9	chr1	190462968	190463473	+	lnc-RGS18-5	lnc-RGS18-5:9	ENSG00000241505	XLOC_000505	NA	NA	NA	inter
CUST_6797_PI429285431	0.9022937	A	0.89059126	A	1.00814450074802	0	lncRNA	6745-1_{1..1733}	"transcript_id ""ENST00000435279.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435279.2"" | genecode_v17"	chr21	 22115239	 22116971	-	ENSG00000224924.2	ENST00000435279.2	LINC00320	LINC00320-003	NA	NA	NA	inter
CUST_16897_PI429285431	2.2418776	A	1.1182334	A	2.17896677751976	0	lncRNA	18605-1_{1..265}	lnc-ASXL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASXL2-1:1	chr2	 25959307	 25959571	-	lnc-ASXL2-1	lnc-ASXL2-1:1	XLOC_002026	linc-DTNB	ASXL2	NA	chr2:25962253-25969457	inter
CUST_32302_PI429285431	0.882577	A	0.8847213	A	0.998514788520565	0	lncRNA	33985-1_{1..2035}	n338878|AK092457|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1304|NULL|-1.0631500|-0.2148579	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338878|AK092457|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1304|NULL|-1.0631500|-0.2148579	chr2	 71916292	 71918326	+	NA	NA	NA	NA	DYSF	NA	chr2:71906292-71913893	inter
CUST_33028_PI429285431	6.816215	P	6.9579067	P	0.906455624669064	0	lncRNA	34643-1_{1..2266}	n339716|BC039367|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2161|NULL|1.4402600|-0.1820227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n339716|BC039367|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2161|NULL|1.4402600|-0.1820227	chr20	 48927247	 48929512	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009026	0.8827664	A	1.0371324	A	0.898527148663307	0	lncRNA	TCONS_00024637	NA	NA	NA	NA	XLOC_011929	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011929), lincRNA [TCONS_00024637]"	chr16:49477517-49477458	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00024637	TCONS_00024637	chr16	 49477458	 49477517	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20072_PI429285431	0.89156926	A	0.898841	A	0.994972295351765	0	lncRNA	21721-1_{1..416}	lnc-PRDM7-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRDM7-2:2	chr16	 90192378	 90192793	-	lnc-PRDM7-2	lnc-PRDM7-2:2	ENSG00000261172.1	RP11-356C4.5	FAM157C	"hg19_refFlat_FAM157B:range=chr9:141106637-1411242565'pad=0,hg19_refFlat_FAM157B:range=chr9:141106637-1411242565'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.00;hg19_refFlat_FAM157A:range=chr3:197879237-1978967235'pad=0,hg19_refFlat_FAM157A:range=chr3:197879237-1978967235'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.00chr16:90182378-90185220"	NA	inter
CUST_9054_PI429285431	1.4300953	A	1.3892276	A	1.0287323653411	0	lncRNA	10578-1_{1..3000}	lnc-PPP2R4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PPP2R4-4:1	chr9	132084071	132087070	+	lnc-PPP2R4-4	lnc-PPP2R4-4:1	ENSG00000179082	C9orf106	C9orf106	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70chr9:132083295-132084882"	NA	inner
CUST_9510_PI429285431	2.1952438	A	1.3560069	A	1.78910356200008	0	lncRNA	11019-1_{1..689}	lnc-EFNB2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFNB2-3:1	chr13	106251866	106252554	-	lnc-EFNB2-3	lnc-EFNB2-3:1	XLOC_010713	linc-SLC10A2-4	NA	NA	NA	inter
CUST_24287_PI429285431	6.300083	P	6.3517833	P	0.964798587369927	0	lncRNA	25838-1_{1..802}	lnc-MOCS3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MOCS3-2:2	chr20	 49626123	 49626924	+	lnc-MOCS3-2	lnc-MOCS3-2:2	ENSG00000232358.1	RP5-955M13.4	KCNG1	"hg19_refFlat_KCNG1:range=chr20:49620576-496268755'pad=0,hg19_refFlat_KCNG1:range=chr20:49620576-496268755'pad=0 3'pad=0 strand=- repeatMasking=none,-109.10chr20:49620193-49636556"	NA	inner
CUST_45301_PI429285431	0.87633836	A	0.87900245	A	0.998155097456484	0	lncRNA	49745-1_{1..1839}	"gi|310120302|ref|XR_108933.1| PREDICTED: Homo sapiens uncharacterized LOC100506331 (LOC100506331), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|310120302|ref|XR_108933.1| PREDICTED: Homo sapiens uncharacterized LOC100506331 (LOC100506331), misc_RNA"	Chr9	 15888035	 15889873	+	100506331	XR_108933.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0006089	1.76933	A	2.183414	A	0.750495850342096	0	lncRNA	ENST00000427745	NA	NA	NA	NA	XLOC_007772	NA	ENST00000427745	NA	NA	"BROAD Institute lincRNA (XLOC_007772), lincRNA [TCONS_00015845]"	chr9:93727608-93727549	hs|9q22.2	Agilent_HUMAN_G3V2	ENST00000427745	ENST00000427745	chr9	 93727549	 93727608	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40410_PI429285431	9.45834	P	9.032623	P	1.34323990905986	0	lncRNA	41195-1_{1..2270}	n409276|NR_033488_3|lncRNA|Homosapiens||RefGeneNoncode|NR_033488_3||-0.1429690|-0.2991795	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409276|NR_033488_3|lncRNA|Homosapiens||RefGeneNoncode|NR_033488_3||-0.1429690|-0.2991795	chr6	  2985531	  2987800	-	NA	NA	NA	NA	NQO2	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.10;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr6:3000067-3011668"	NA	inner
CUST_44387_PI429285431	1.9160533	A	0.88267386	A	2.04681319644949	0	lncRNA	49006-2_{3001..4475}	"gi|324120888|ref|NR_037913.1| Homo sapiens ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase (RCHY1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|324120888|ref|NR_037913.1| Homo sapiens ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase (RCHY1), transcript variant 4, non-coding RNA"	Chr4	 76407247	 76408721	-	25898	NR_037913.1	NA	NA	NA	NA	NA	inter
CUST_40650_PI429285431	6.7796593	P	6.5948186	P	1.13669145471618	0	lncRNA	41389-1_{1..1652}	n410193|NR_036750|lncRNA|Homosapiens||RefGeneNoncode|NR_036750||7.1152900|-0.2902408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410193|NR_036750|lncRNA|Homosapiens||RefGeneNoncode|NR_036750||7.1152900|-0.2902408	chr17	 36351795	 36353446	-	NA	NA	NA	NA	TBC1D3	NA	chr17:36341795-36348666	inter
CUST_43803_PI429285431	2.9854918	P	2.7687476	A	1.16210803930316	0	lncRNA	48530-1_{1..475}	"gi|310118889|ref|XR_108396.1| PREDICTED: Homo sapiens uncharacterized LOC100506457 (LOC100506457), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118889|ref|XR_108396.1| PREDICTED: Homo sapiens uncharacterized LOC100506457 (LOC100506457), misc_RNA"	Chr2	 12246962	 12247436	+	100506457	XR_108396.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0004034	1.6704224	A	0.88603294	A	1.72236327123114	0	lncRNA	ENST00000513926	NA	NA	NA	NA	XLOC_004479	NA	ENST00000513926	THC2734402	NA	"BROAD Institute lincRNA (XLOC_004479), lincRNA [TCONS_00009465]"	chr5:95614396-95614455	hs|5q15	Agilent_HUMAN_G3V2	ENST00000513926	ENST00000513926	chr5	 95614396	 95614455	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008474	0.8865455	A	1.2843761	A	0.758998742228773	0	lncRNA	TCONS_00022830	NA	NA	NA	NA	XLOC_011100	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011100), lincRNA [TCONS_00022830]"	chr14:88598621-88598562	hs|14q31.3	Agilent_HUMAN_G3V2	TCONS_00022830	TCONS_00022830	chr14	 88598562	 88598621	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45116_PI429285431	2.8126314	A	1.9987088	A	1.75798480412645	0	lncRNA	49597-1_{1..1359}	"gi|310120130|ref|XR_108708.1| PREDICTED: Homo sapiens uncharacterized LOC100506302 (LOC100506302), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120130|ref|XR_108708.1| PREDICTED: Homo sapiens uncharacterized LOC100506302 (LOC100506302), misc_RNA"	Chr7	155434610	155435968	-	100506302	XR_108708.2	NA	NA	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90"	NA	inter
CUST_43969_PI429285431	6.0805345	P	5.77951	P	1.23201899554519	0	lncRNA	48673-1_{1..3000}	"gi|388556552|ref|NR_049790.1| Homo sapiens pleckstrin homology domain containing, family B (evectins) member 2 (PLEKHB2), transcript variant 12, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388556552|ref|NR_049790.1| Homo sapiens pleckstrin homology domain containing, family B (evectins) member 2 (PLEKHB2), transcript variant 12, non-coding RNA"	Chr2	131862420	131865419	+	55041	NR_049790.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.04;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00"	NA	inter
LNCA_21_P0005270	1.9977721	A	2.9850285	P	0.50443615907968	0	lncRNA	ENST00000427073	NA	NA	NA	NA	XLOC_006310	NA	ENST00000427073	NA	NA	"BROAD Institute lincRNA (XLOC_006310), lincRNA [TCONS_00013102]"	chr7:156738280-156738339	hs|7q36.3	Agilent_HUMAN_G3V2	ENST00000427073	ENST00000427073	chr7	156738280	156738339	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35119_PI429285431	1.1202254	A	0.97381	A	1.10681599644135	0	lncRNA	36524-1_{1..1159}	n342087|L23544|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4569|NULL|-0.8623470|-0.3831876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342087|L23544|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4569|NULL|-0.8623470|-0.3831876	chr6	 95107381	 95108539	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002238	3.8782952	P	3.7655241	P	1.08130318880629	0	lncRNA	TCONS_00003728	NA	NA	NA	NA	XLOC_001516	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001516), lincRNA [TCONS_00003728]"	chr2:68589391-68589450	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00003728	TCONS_00003728	chr2	 68589391	 68589450	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19496_PI429285431	13.9526825	P	13.981542	P	0.980194869106853	0	lncRNA	21152-1_{1..1287}	lnc-FAM83F-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-FAM83F-1:1	chr22	 40359924	 40361210	+	lnc-FAM83F-1	lnc-FAM83F-1:1	ENSG00000225528.1	RP3-370M22.8	GRAP2	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20chr22:40349924-40367384"	NA	inner
LNCA_21_P0011231	6.276448	P	6.0253215	P	1.19013604657154	0	lncRNA	ENST00000448411	NA	NA	NA	NA	XLOC_l2_004010	NA	ENST00000448411	THC2707482	NA	"BROAD Institute lincRNA (XLOC_l2_004010), lincRNA [TCONS_l2_00007561]"	chr13:63246504-63246445	hs|13q21.31	Agilent_HUMAN_G3V2	ENST00000448411	ENST00000448411	chr13	 63246445	 63246504	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16846_PI429285431	0.88982356	A	0.89746034	A	0.994720572894778	0	lncRNA	18554-1_{1..646}	lnc-ARF5-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARF5-4:1	chr7	126064175	126064820	+	lnc-ARF5-4	lnc-ARF5-4:1	XLOC_006236	linc-ARF5-3	NA	NA	NA	inter
LNCA_21_P0010008	0.8894129	A	0.89006376	A	0.999548959975209	0	lncRNA	TCONS_00028625	NA	NA	NA	NA	XLOC_013666	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013666), lincRNA [TCONS_00028625]"	chr20:18251364-18251305	hs|20p11.23	Agilent_HUMAN_G3V2	TCONS_00028625	TCONS_00028625	chr20	 18251305	 18251364	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42840_PI429285431	0.9160052	A	0.92197055	A	0.995873671252729	0	lncRNA	45881-1_{1..71}	ENST00000515992 ncrna:snoRNA chromosome:GRCh37:2:229452519:229452589:-1 gene:ENSG00000251801 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515992 ncrna:snoRNA chromosome:GRCh37:2:229452519:229452589:-1 gene:ENSG00000251801 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	229452519	229452589	-	ENSG00000251801	ENST00000515992	NA	NA	NA	NA	NA	inter
CUST_9112_PI429285431	0.9536832	A	1.1601655	A	0.866647790491022	0	lncRNA	10632-1_{1..2281}	lnc-CEBPB-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CEBPB-7:1	chr20	 48929837	 48932117	+	lnc-CEBPB-7	lnc-CEBPB-7:1	ENSG00000203999	RP11-290F20.1	NA	NA	NA	inter
CUST_13383_PI429285431	0.91364014	A	0.9208611	A	0.995007317016719	0	lncRNA	15018-1_{1..580}	lnc-SOX11-3:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOX11-3:11	chr2	  6141115	  6141694	+	lnc-SOX11-3	lnc-SOX11-3:11	XLOC_001327	linc-RSAD2-2	NA	NA	NA	inter
CUST_26560_PI429285431	1.7622387	A	2.0528133	A	0.81757636745033	0	lncRNA	28065-1_{1..730}	lnc-THBS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THBS1-1:1	chr15	 39765592	 39766321	+	lnc-THBS1-1	lnc-THBS1-1:1	ENSG00000259269.1	RP11-624L4.2	NA	NA	NA	inter
CUST_24659_PI429285431	0.89394903	A	1.3082415	A	0.750387411231914	0	lncRNA	26208-1_{1..891}	lnc-ATXN7-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATXN7-7:2	chr3	 64568949	 64569839	+	lnc-ATXN7-7	lnc-ATXN7-7:2	ENSG00000241158.1	ADAMTS9-AS1	ADAMTS9	"hg19_refFlat_ADAMTS9:range=chr3:64507847-646733335'pad=0,hg19_refFlat_ADAMTS9:range=chr3:64507847-646733335'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30chr3:64558949-64579416"	NA	inner
CUST_51749_PI429285431	4.846694	P	4.774735	P	1.05114303619312	0	lncRNA	55302-1_{1..389}	hg19_lincRNAsTranscripts_TCONS_l2_00012518 range=chr19:37742797-37753544 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012518 range=chr19:37742797-37753544 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 37742797	 37743185	+	NA	NA	NA	NA	ZNF383	NA	chr19:37732797-37734574	inter
CUST_12167_PI429285431	0.89313775	A	0.88948154	A	1.00253750568465	0	lncRNA	13766-1_{1..300}	lnc-SPATA5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPATA5-1:1	chr4	124247007	124247306	+	lnc-SPATA5-1	lnc-SPATA5-1:1	XLOC_003678	linc-SPRY1-2	SPATA5	NA	chr4:124237007-124240605	inter
CUST_36559_PI429285431	0.8768499	A	0.89316607	A	0.988754204833671	0	lncRNA	37755-1_{1..964}	n345057|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_606|NULL|-1.6537300|-0.2716413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345057|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_606|NULL|-1.6537300|-0.2716413	chr9	102563813	102564776	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35275_PI429285431	1.0437242	A	1.3374981	A	0.815765330535114	0	lncRNA	36675-1_{1..586}	n342284|AF147361|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4776|NULL|-0.2402010|-0.3052791	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342284|AF147361|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4776|NULL|-0.2402010|-0.3052791	chr15	 90493991	 90494576	+	NA	NA	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50"	NA	inter
CUST_20577_PI429285431	0.88891983	A	0.89848644	A	0.993390868271947	0	lncRNA	22218-1_{1..435}	lnc-C10orf71-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf71-1:1	chr10	 50680749	 50681183	+	lnc-C10orf71-1	lnc-C10orf71-1:1	ENSG00000235939.1	RP11-123B3.2	ERCC6	NA	chr10:50670749-50690949	inner
CUST_28102_PI429285431	1.3734869	A	1.828413	A	0.729547541197382	0	lncRNA	29724-1_{1..569}	n325374|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324041|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324041|-0.9171780|-0.3880978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325374|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324041|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324041|-0.9171780|-0.3880978	chr2	 22453970	 22454538	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30086_PI429285431	4.121224	P	4.3828664	P	0.834137775459098	0	lncRNA	31858-1_{1..246}	n334616|U84509|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221872|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221872|-0.9953890|-0.0369499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334616|U84509|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221872|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221872|-0.9953890|-0.0369499	chr22	 19967798	 19968043	+	NA	NA	NA	NA	ARVCF	NA	chr22:19957798-19978044	inner
CUST_50021_PI429285431	4.9758606	P	4.964938	P	1.00759970164774	0	lncRNA	53757-1_{1..1964}	hg19_lincRNAsTranscripts_TCONS_l2_00027578 range=chr8:8098309-8102408 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027578 range=chr8:8098309-8102408 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	  8098309	  8100272	+	NA	NA	NA	NA	NA	"hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ALG1L2:range=chr3:129800860-1298170985'pad=0,hg19_refFlat_ALG1L2:range=chr3:129800860-1298170985'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70"	NA	inter
CUST_6_PI429201921	4.6077466	P	3.8188658	P	1.72773361811974	0	lncRNA	6-1_{1..580}	TC03002304.hg.1	TCONS_l2_00018516-XLOC_l2_009680 // Broad TUCP // linc-TRAK1-2 chr3:+:42018709-42019290 // chr3 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr3:+:42018709-42019290	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00018516-XLOC_l2_009680	linc-TRAK1-2	chr3	 42018709	 42019290	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32669_PI429285431	14.930338	P	15.195625	P	0.832033199186027	0	lncRNA	34320-1_{1..390}	n339296|BC035731|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1728|NULL|0.6966640|-0.0751258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339296|BC035731|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1728|NULL|0.6966640|-0.0751258	chr16	 77246171	 77246560	+	NA	NA	NA	NA	SYCE1L	NA	chr16:77236171-77246976	inner
CUST_7574_PI429285431	0.90628284	A	0.91553843	A	0.993605049180017	0	lncRNA	9209-1_{1..1216}	lnc-JAM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JAM2-1:1	chr21	 27415090	 27416305	+	lnc-JAM2-1	lnc-JAM2-1:1	ENSG00000251052	ENST00000509807	APP	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40chr21:27405090-27426048"	NA	inner
CUST_17124_PI429285431	2.3131418	A	2.555862	A	0.845150279145488	0	lncRNA	18834-1_{1..313}	lnc-CSGALNACT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CSGALNACT1-2:1	chr8	 19782569	 19782881	-	lnc-CSGALNACT1-2	lnc-CSGALNACT1-2:1	XLOC_007017	linc-CSGALNACT1-2	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80"	NA	inter
CUST_17813_PI429285431	0.90273863	A	1.2988994	A	0.759877744779303	0	lncRNA	19549-2_{3001..3554}	lnc-TMEM14A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TMEM14A-1:1	chr6	 52534547	 52535100	+	lnc-TMEM14A-1	lnc-TMEM14A-1:1	XLOC_005323	linc-TMEM14A-1	TMEM14A	NA	chr6:52535884-52543951	inter
CUST_8932_PI429285431	10.910977	P	10.6566515	P	1.19277795582966	0	lncRNA	10467-1_{1..773}	lnc-TRPV2-1:32	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRPV2-1:32	chr17	 16344388	 16345160	+	lnc-TRPV2-1	lnc-TRPV2-1:32	ENSG00000175061	NCRNA00188	C17orf76	NA	chr17:16345328-16354880	inter
CUST_1167_PI429285431	0.91970503	A	0.9155071	A	1.00291402087234	0	lncRNA	1156-1_{1..495}	"transcript_id ""ENST00000412153.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412153.1"" | genecode_v17"	chr2	177370973	177371467	-	ENSG00000229434.1	ENST00000412153.1	AC017048.1	AC017048.1-001	NA	NA	NA	inter
CUST_51916_PI429285431	0.89831185	A	1.8573829	A	0.514388020686611	0	lncRNA	55458-1_{1..888}	hg19_lincRNAsTranscripts_TCONS_l2_00016336 range=chr20:50827178-51166657 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016336 range=chr20:50827178-51166657 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 50827178	 50828065	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19119_PI429285431	5.5305376	P	5.8695893	P	0.790560785789867	0	lncRNA	20800-1_{1..1628}	lnc-EVX1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-EVX1-6:1	NA	NA	     1627	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002019	7.995365	P	8.196382	P	0.869937101742616	0	lncRNA	ENST00000431117	NA	NA	NA	NA	XLOC_001994	NA	ENST00000431117	NA	NA	"BROAD Institute lincRNA (XLOC_001994), lincRNA [TCONS_00003210]"	chr2:15808959-15808900	hs|2p24.3	Agilent_HUMAN_G3V2	ENST00000431117	ENST00000431117	chr2	 15808900	 15808959	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001545	7.2094936	P	7.325354	P	0.922831784625284	0	lncRNA	XR_110473	XR_110473	XR_110473	NA	Hs.546492	LOC100505821	uncharacterized LOC100505821	NA	THC2637940	NA	"PREDICTED: Homo sapiens hypothetical LOC100505821 (LOC100505821), miscRNA [XR_110473]"	chr1:91248735-91248676	hs|1p22.2	Agilent_HUMAN_G3V2	XR_110473	XR_110473	chr1	 91248676	 91248735	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25598_PI429285431	8.4410305	P	8.461585	P	0.985853718679589	0	lncRNA	27128-1_{1..275}	lnc-TUBA1C-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUBA1C-2:2	chr12	 49487032	 49487306	+	lnc-TUBA1C-2	lnc-TUBA1C-2:2	ENSG00000257346.1	RP11-386G11.8	LMBR1L	NA	chr12:49490922-49497095	inner
CUST_41630_PI429285431	2.9811642	A	2.8732696	A	1.07765441120114	0	lncRNA	43019-1_{1..81}	ENST00000581329 ncrna:miRNA chromosome:GRCh37:2:64567893:64567973:1 gene:ENSG00000264297 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581329 ncrna:miRNA chromosome:GRCh37:2:64567893:64567973:1 gene:ENSG00000264297 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 64567893	 64567973	+	ENSG00000264297	ENST00000581329	NA	NA	NA	NA	NA	inter
CUST_50985_PI429285431	1.3163517	A	1.1767207	A	1.10162331620171	0	lncRNA	54628-1_{1..327}	hg19_lincRNAsTranscripts_TCONS_l2_00005934 range=chr12:120408472-120413039 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005934 range=chr12:120408472-120413039 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	120408472	120408798	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33053_PI429285431	2.3782158	A	1.4899101	A	1.85100103256022	0	lncRNA	34664-2_{3001..3279}	n339742|AK055652|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2188|NULL|-1.1308000|-0.3698997	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339742|AK055652|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2188|NULL|-1.1308000|-0.3698997	chr3	191116179	191116457	+	NA	NA	NA	NA	CCDC50	NA	chr3:191103179-191116459	inner
LNCA_21_P0004234	0.9046274	A	0.91965437	A	0.989638155768996	0	lncRNA	TCONS_00009887	NA	NA	NA	NA	XLOC_004308	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004308), lincRNA [TCONS_00009887]"	chr5:17442235-17442294	hs|5p15.1	Agilent_HUMAN_G3V2	TCONS_00009887	TCONS_00009887	chr5	 17442235	 17442294	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50664_PI429285431	6.524384	P	6.49139	P	1.02313321463417	0	lncRNA	54339-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00003499 range=chr10:43009044-43048251 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003499 range=chr10:43009044-43048251 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 43012044	 43015043	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45136_PI429285431	6.206078	P	6.574838	P	0.774447850660346	0	lncRNA	49616-1_{1..607}	"gi|376319219|ref|NR_046351.1| Homo sapiens family with sequence similarity 90, member A10, pseudogene (FAM90A10P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|376319219|ref|NR_046351.1| Homo sapiens family with sequence similarity 90, member A10, pseudogene (FAM90A10P), non-coding RNA"	Chr8	  7627106	  7627712	+	441328	NR_046351.1	NA	NA	NA	NA	NA	inter
CUST_10387_PI429285431	0.91729426	A	0.91508234	A	1.00153436204235	0	lncRNA	11915-1_{1..786}	lnc-USP12-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP12-3:2	chr13	 27781614	 27782399	-	lnc-USP12-3	lnc-USP12-3:2	XLOC_010542	linc-USP12-1	NA	NA	NA	inter
CUST_127_PI429201921	3.25058	A	3.7978382	P	0.684319422526703	0	lncRNA	119-1_{1..3000}	TC01006169.hg.1	TCONS_l2_00002788-XLOC_l2_001347 // Broad TUCP // linc-WNT9A chr1:-:228155358-228158853 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:228155358-228158853	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00002788-XLOC_l2_001347	linc-WNT9A	chr1	228155358	228158853	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13786_PI429285431	2.3432665	A	2.5250933	A	0.881585988677904	0	lncRNA	15428-1_{1..1719}	lnc-RNLS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNLS-1:1	chr10	 89839141	 89840859	-	lnc-RNLS-1	lnc-RNLS-1:1	XLOC_008895	linc-KILLIN	NA	NA	NA	inter
CUST_42268_PI429285431	3.4338722	P	3.8526878	P	0.74803848461245	0	lncRNA	44875-1_{1..126}	ENST00000363782 ncrna:snoRNA chromosome:GRCh37:16:28190419:28190544:1 gene:ENSG00000200652 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363782 ncrna:snoRNA chromosome:GRCh37:16:28190419:28190544:1 gene:ENSG00000200652 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 28190419	 28190544	+	ENSG00000200652	ENST00000363782	NA	NA	XPO6	NA	chr16:28180419-28200544	inner
CUST_8461_PI429285431	2.520254	A	2.505605	A	1.01020563894831	0	lncRNA	10029-1_{1..646}	lnc-ANAPC10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ANAPC10-1:1	chr4	145582427	145583072	-	lnc-ANAPC10-1	lnc-ANAPC10-1:1	ENSG00000248890	RP11-291L15.2	HHIP	"hg19_refFlat_HHIP:range=chr4:145567828-1456591095'pad=0,hg19_refFlat_HHIP:range=chr4:145567828-1456591095'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.90chr4:145572427-145592509"	NA	inner
CUST_16282_PI429285431	0.88231254	A	0.8872361	A	0.996593065085875	0	lncRNA	17987-1_{1..361}	lnc-ADCYAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADCYAP1-1:1	chr18	  1050021	  1050381	+	lnc-ADCYAP1-1	lnc-ADCYAP1-1:1	XLOC_012605	linc-NDC80-5	NA	NA	NA	inter
LNCA_21_P0012073	10.254675	P	10.120867	P	1.09718590968904	0	lncRNA	ENST00000434790	XR_109954	XR_109954	NA	NA	XLOC_l2_008124	NA	ENST00000434790	THC2663667	NA	"PREDICTED: Homo sapiens hypothetical LOC100132330, transcript variant 1 (LOC100132330), miscRNA [XR_109954]"	chr2:89117848-89117789	hs|2p11.2	Agilent_HUMAN_G3V2	ENST00000434790	ENST00000434790	chr2	 89117789	 89117848	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2972_PI429285431	3.8486109	P	4.288418	P	0.737233176096465	0	lncRNA	2951-1_{1..412}	"transcript_id ""ENST00000517731.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517731.1"" | genecode_v17"	chr8	  1981650	  1982061	+	ENSG00000253805.1	ENST00000517731.1	RP11-1049H7.2	RP11-1049H7.2-001	MYOM2	NA	chr8:1993158-1993729	inter
CUST_19959_PI429285431	0.8902109	A	0.9062834	A	0.988921218705505	0	lncRNA	21613-1_{1..627}	lnc-AC021860.1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC021860.1-2:4	chr4	 38626043	 38626669	-	lnc-AC021860.1-2	lnc-AC021860.1-2:4	ENSG00000231160.3	RP11-617D20.1	NA	NA	NA	inter
CUST_40497_PI429285431	1.2121274	A	1.2028935	A	1.00642097841181	0	lncRNA	41262-1_{1..1609}	n409432|NR_033823|lncRNA|Homosapiens||RefGeneNoncode|NR_033823||-1.0432000|-0.2909826	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409432|NR_033823|lncRNA|Homosapiens||RefGeneNoncode|NR_033823||-1.0432000|-0.2909826	chr6	  1887519	  1889127	+	NA	NA	NA	NA	GMDS	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60chr6:1877519-1917505"	NA	inner
CUST_2631_PI429285431	5.990624	P	6.1599846	P	0.889236702046519	0	lncRNA	2618-1_{1..370}	"transcript_id ""ENST00000452888.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452888.1"" | genecode_v17"	chr6	134957627	134957996	+	ENSG00000227723.1	ENST00000452888.1	CTA-31J9.2	CTA-31J9.2-001	NA	NA	NA	inter
CUST_42647_PI429285431	5.734645	P	6.198027	P	0.725284036170765	0	lncRNA	45538-1_{1..111}	ENST00000390833 ncrna:snoRNA chromosome:GRCh37:11:46783939:46784049:-1 gene:ENSG00000212135 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390833 ncrna:snoRNA chromosome:GRCh37:11:46783939:46784049:-1 gene:ENSG00000212135 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 46783939	 46784049	-	ENSG00000212135	ENST00000390833	NA	NA	CKAP5	NA	chr11:46773939-46794049	inner
CUST_51754_PI429285431	0.8945073	A	1.111339	A	0.860453002339174	0	lncRNA	55307-1_{1..401}	hg19_lincRNAsTranscripts_TCONS_l2_00012940 range=chr19:22638827-22715295 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012940 range=chr19:22638827-22715295 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 22638827	 22639227	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_363_PI429285431	1.4276205	A	0.8919416	A	1.4496241547612	0	lncRNA	355-1_{1..377}	"transcript_id ""ENST00000413231.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413231.1"" | genecode_v17"	chr1	113550876	113551252	+	ENSG00000236066.1	ENST00000413231.1	RP11-389O22.1	RP11-389O22.1-001	NA	NA	NA	inter
CUST_22061_PI429285431	0.91079056	A	0.9185336	A	0.994647310623399	0	lncRNA	23668-2_{3001..6000}	lnc-GABRB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-GABRB1-1:1	chr4	 47436977	 47439976	+	lnc-GABRB1-1	lnc-GABRB1-1:1	ENSG00000260918.1	RP11-731J8.2	GABRB1	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chr4:47423977-47428462"	NA	inter
CUST_31621_PI429285431	0.87678003	A	0.8810735	A	0.997028417292774	0	lncRNA	33377-1_{1..1794}	n338141|BC035160|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|529|NULL|-1.0823500|-0.1890928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338141|BC035160|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|529|NULL|-1.0823500|-0.1890928	chr1	112296396	112298189	-	NA	NA	NA	NA	C1orf183	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr1:112286396-112298419"	NA	inner
CUST_30205_PI429285431	6.616349	P	7.0327997	P	0.749265692634767	0	lncRNA	31980-1_{1..361}	n335021|AJ511266|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248366|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248366|2.5975300|-0.1555953	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335021|AJ511266|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248366|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248366|2.5975300|-0.1555953	chr20	 49411607	 49411967	+	NA	NA	NA	NA	BCAS4	NA	chr20:49411467-49493714	inner
CUST_52205_PI429285431	1.1678853	A	1.6736355	A	0.704294050122075	0	lncRNA	55722-1_{1..556}	hg19_lincRNAsTranscripts_TCONS_l2_00018070 range=chr22:42545890-42546993 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018070 range=chr22:42545890-42546993 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 42545890	 42546445	-	NA	NA	NA	NA	TCF20	NA	chr22:42556019-42556993	inter
CUST_49359_PI429285431	7.048184	P	6.4187913	P	1.54691368580896	0	lncRNA	53172-1_{1..424}	hg19_lincRNAsTranscripts_TCONS_l2_00023029 range=chr5:96392026-96392565 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023029 range=chr5:96392026-96392565 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 96392026	 96392449	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24341_PI429285431	4.4786644	P	3.938867	P	1.45376834794229	0	lncRNA	25894-1_{1..569}	lnc-EIF6-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF6-1:5	chr20	 33865849	 33866417	-	lnc-EIF6-1	lnc-EIF6-1:5	ENSG00000126005.10	MT1P3	MMP24	"hg19_refFlat_MT1E:range=chr16:56659764-566608835'pad=0,hg19_refFlat_MT1E:range=chr16:56659764-566608835'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_MT1M:range=chr16:56666644-566677545'pad=0,hg19_refFlat_MT1M:range=chr16:56666644-566677545'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MT2A:range=chr16:56642568-566432665'pad=0,hg19_refFlat_MT2A:range=chr16:56642568-566432665'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MT1F:range=chr16:56691971-566930765'pad=0,hg19_refFlat_MT1F:range=chr16:56691971-566930765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_MT1A:range=chr16:56672651-566738625'pad=0,hg19_refFlat_MT1A:range=chr16:56672651-566738625'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30;hg19_refFlat_MT1B:range=chr16:56685866-566869775'pad=0,hg19_refFlat_MT1B:range=chr16:56685866-566869775'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MT1G:range=chr16:56700791-567019055'pad=0,hg19_refFlat_MT1G:range=chr16:56700791-567019055'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MT1H:range=chr16:56703797-567049015'pad=0,hg19_refFlat_MT1H:range=chr16:56703797-567049015'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40chr20:33855849-33864804"	NA	inter
LNCA_21_P0010479	0.88249826	A	0.8926	A	0.99302246423495	0	lncRNA	TCONS_00029913	NA	NA	NA	NA	XLOC_014386	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014386), lincRNA [TCONS_00029913]"	chr22:42063163-42062988	hs|22q13.2	Agilent_HUMAN_G3V2	TCONS_00029913	TCONS_00029913	chr22	 42062988	 42063163	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11564_PI429285431	7.922604	P	7.636331	P	1.21948583454905	0	lncRNA	13141-1_{1..213}	lnc-SLC4A3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC4A3-3:1	chr2	220607676	220607888	+	lnc-SLC4A3-3	lnc-SLC4A3-3:1	XLOC_001869	linc-CCDC140-10	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50"	NA	inter
CUST_49097_PI429285431	2.6173196	A	2.983204	A	0.775993030409066	0	lncRNA	52921-1_{1..508}	hg19_lincRNAsTranscripts_TCONS_l2_00020442 range=chr4:19535202-19566914 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020442 range=chr4:19535202-19566914 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 19535202	 19535709	+	NA	NA	NA	NA	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60"	NA	inter
CUST_20945_PI429285431	1.2667453	A	1.383376	A	0.922339187393819	0	lncRNA	22576-1_{1..552}	lnc-FSIP1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FSIP1-5:3	chr15	 39712745	 39713296	-	lnc-FSIP1-5	lnc-FSIP1-5:3	ENSG00000259345.1	RP11-624L4.1	NA	NA	NA	inter
CUST_13749_PI429285431	1.6405917	A	2.2586226	A	0.651559619266764	0	lncRNA	15393-1_{1..649}	lnc-RGPD4-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RGPD4-3:2	chr2	108022445	108023093	+	lnc-RGPD4-3	lnc-RGPD4-3:2	XLOC_001618	linc-RGPD4-3	NA	NA	NA	inter
CUST_15112_PI429285431	0.8822237	A	0.88379574	A	0.99891093836481	0	lncRNA	16775-3_{6001..9000}	lnc-KIF13B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIF13B-1:1	chr8	 29155969	 29158968	-	lnc-KIF13B-1	lnc-KIF13B-1:1	XLOC_007035	linc-KIF13B	NA	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0,hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
CUST_42767_PI429285431	0.8939075	A	0.90563565	A	0.991903619573201	0	lncRNA	45743-1_{1..86}	ENST00000391226 ncrna:snoRNA chromosome:GRCh37:15:25513613:25513698:1 gene:ENSG00000212528 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391226 ncrna:snoRNA chromosome:GRCh37:15:25513613:25513698:1 gene:ENSG00000212528 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 25513613	 25513698	+	ENSG00000212528	ENST00000391226	NA	NA	SNRPN	NA	chr15:25503613-25523698	inter
LNCA_21_P0004671	0.8834429	A	1.2278621	A	0.787624994730163	0	lncRNA	ENST00000442184	NA	NA	NA	NA	XLOC_005395	NA	ENST00000442184	NA	NA	"BROAD Institute lincRNA (XLOC_005395), lincRNA [TCONS_00011341]"	chr6:97243616-97243675	hs|6q16.1	Agilent_HUMAN_G3V2	ENST00000442184	ENST00000442184	chr6	 97243616	 97243675	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14017_PI429285431	1.5954274	A	1.9852691	A	0.763213343621815	0	lncRNA	15665-1_{1..395}	lnc-STK39-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STK39-3:2	chr2	169285454	169285848	-	lnc-STK39-3	lnc-STK39-3:2	XLOC_002384	linc-STK39-3	NA	NA	NA	inter
CUST_25715_PI429285431	0.88568485	A	0.8906368	A	0.996573453873572	0	lncRNA	27243-1_{1..1942}	lnc-KCNMB4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-KCNMB4-1:2	chr12	 70931830	 70933771	+	lnc-KCNMB4-1	lnc-KCNMB4-1:2	ENSG00000258168.1	RP11-588H23.3	PTPRB	"hg19_refFlat_PTPRB:range=chr12:70915269-710311755'pad=0,hg19_refFlat_PTPRB:range=chr12:70915269-710311755'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_PTPRB:range=chr12:70915269-710035945'pad=0,hg19_refFlat_PTPRB:range=chr12:70915269-710035945'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80chr12:70921830-70942859"	NA	inner
LNCA_21_P0014155	1.6135898	A	0.8855948	A	1.65633558223745	0	lncRNA	XR_108629	XR_108629	XR_108629	NA	NA	LOC100129461	uncharacterized LOC100129461	NA	THC2676280	NA	"PREDICTED: Homo sapiens hypothetical LOC100129461 (LOC100129461), miscRNA [XR_108629]"	chr6:5031222-5031281	hs|6p25.1	Agilent_HUMAN_G3V2	XR_108629	XR_108629	chr6	  5031222	  5031281	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37102_PI429285431	0.9152268	A	1.4667437	A	0.682302354549447	0	lncRNA	38227-1_{1..688}	n345545|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1094|NULL|-1.3337100|-0.3593800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345545|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1094|NULL|-1.3337100|-0.3593800	chr2	158215198	158215885	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23249_PI429285431	4.2931175	P	4.42642	P	0.911741974134172	0	lncRNA	24821-1_{1..428}	lnc-LRCH1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRCH1-4:2	chr13	 47430225	 47430652	+	lnc-LRCH1-4	lnc-LRCH1-4:2	ENSG00000224517.1	HTR2A-AS1	HTR2A	NA	chr13:47420225-47440434	inner
CUST_16697_PI429285431	0.89602023	A	0.90557224	A	0.993400921387576	0	lncRNA	18402-1_{1..350}	lnc-DSG1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DSG1-4:1	chr18	 27229360	 27229709	+	lnc-DSG1-4	lnc-DSG1-4:1	XLOC_012654	linc-DSG1-2	NA	NA	NA	inter
CUST_4538_PI429285431	1.6581798	A	2.4903922	A	0.561667254269587	0	lncRNA	4486-1_{1..426}	"transcript_id ""ENST00000539078.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539078.1"" | genecode_v17"	chr12	132409281	132409706	-	ENSG00000255992.1	ENST00000539078.1	RP11-417L19.4	RP11-417L19.4-001	ULK1	NA	chr12:132399281-132407707	inner
CUST_33953_PI429285431	1.4892641	A	0.8870704	A	1.51802305302782	0	lncRNA	35493-1_{1..968}	n340758|AK129803|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3221|NULL|-1.3686200|-0.4429044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340758|AK129803|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3221|NULL|-1.3686200|-0.4429044	chr17	 54942218	 54943185	+	NA	NA	NA	NA	DGKE	NA	chr17:54932218-54946036	inner
CUST_38871_PI429285431	7.1535716	P	6.7234187	P	1.34737636721583	0	lncRNA	39858-1_{1..1256}	n384755|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003lsg.2||-1.3330500|-0.3858670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384755|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003lsg.2||-1.3330500|-0.3858670	chr5	149822227	149823482	-	NA	NA	NA	NA	RPS14	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.50chr5:149823792-149829319"	NA	inter
CUST_18115_PI429285431	1.283762	A	0.9091142	A	1.29652300047238	0	lncRNA	19849-1_{1..2456}	lnc-ATXN1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATXN1-2:1	chr6	 16128167	 16130622	-	lnc-ATXN1-2	lnc-ATXN1-2:1	XLOC_005622	linc-DTNBP1-4	MYLIP	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10chr6:16129317-16139130"	NA	inter
CUST_6638_PI429285431	2.6515307	A	2.7784855	P	0.91576237703524	0	lncRNA	6584-1_{1..1770}	"transcript_id ""ENST00000569178.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569178.1"" | genecode_v17"	chr20	  7282703	  7284472	-	ENSG00000261249.1	ENST00000569178.1	RP11-19D2.2	RP11-19D2.2-001	NA	NA	NA	inter
CUST_48271_PI429285431	3.0225675	A	4.2118397	P	0.438524028187565	0	lncRNA	52132-2_{3001..3737}	hg19_lincRNAsTranscripts_TCONS_l2_00000066 range=chr1:3817250-3833764 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000066 range=chr1:3817250-3833764 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	  3820250	  3820986	+	NA	NA	NA	NA	C1orf174	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr1:3807250-3816857"	NA	inter
CUST_14804_PI429285431	4.7750354	P	4.317661	P	1.3730407087278	0	lncRNA	16465-1_{1..343}	lnc-MAOA-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAOA-2:1	chrX	 43297584	 43297926	+	lnc-MAOA-2	lnc-MAOA-2:1	XLOC_007963	linc-MAOA-1	NA	NA	NA	inter
CUST_36842_PI429285431	10.18618	P	10.3214	P	0.910530973969698	0	lncRNA	38007-1_{1..2264}	n345315|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_864|NULL|-1.3535000|-0.2663765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n345315|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_864|NULL|-1.3535000|-0.2663765	chr15	 83395282	 83397545	-	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10"	NA	inter
CUST_32978_PI429285431	1.7384641	A	0.9178379	A	1.76617243119501	0	lncRNA	34594-1_{1..537}	n339655|AJ308022|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2099|NULL|-1.1745300|-0.3627030	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339655|AJ308022|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2099|NULL|-1.1745300|-0.3627030	chr20	 33097347	 33097883	-	NA	NA	NA	NA	ITCH	NA	chr20:33087347-33099197	inner
LNCA_33_P3285585	0.8880165	A	0.88940084	A	0.999040908854263	0	lncRNA	ENST00000414816	XR_109271	XR_109271	NA	Hs.592028	NA	NA	ENST00000414816	THC2489755	NA	"PREDICTED: Homo sapiens hypothetical LOC400511 (FLJ45256), miscRNA [XR_109271]"	chr16:24674226-24674167	hs|16p12.1	Agilent_HUMAN_G3V2	ENST00000414816	ENST00000414816	chr16	 24674167	 24674226	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12736_PI429285431	0.8843762	A	0.88664454	A	0.998428941930277	0	lncRNA	14361-1_{1..336}	lnc-MRPL19-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPL19-2:1	chr2	 75709564	 75709899	+	lnc-MRPL19-2	lnc-MRPL19-2:1	XLOC_001540	linc-MRPL19-1	FAM176A	NA	chr2:75699564-75719705	inter
CUST_32821_PI429285431	1.0347521	A	1.2532387	A	0.85946655181519	0	lncRNA	34456-1_{1..791}	n339469|BC032918|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1907|NULL|-1.1216500|-0.3056280	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339469|BC032918|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1907|NULL|-1.1216500|-0.3056280	chr3	120552286	120553076	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46740_PI429285431	11.336796	P	12.00602	P	0.628844840763411	0	lncRNA	50892-1_{1..1629}	"gi|218749808|ref|NR_024603.1| Homo sapiens mannose-P-dolichol utilization defect 1 (MPDU1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|218749808|ref|NR_024603.1| Homo sapiens mannose-P-dolichol utilization defect 1 (MPDU1), transcript variant 2, non-coding RNA"	Chr17	  7486965	  7488593	+	9526	NR_024603.1	NA	NA	NA	NA	NA	inter
CUST_18560_PI429285431	2.2062564	A	2.6576753	A	0.73132323297933	0	lncRNA	20271-1_{1..1473}	lnc-RNF112-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF112-1:2	chr17	 19319480	 19320952	+	lnc-RNF112-1	lnc-RNF112-1:2	ENSG00000128482	RNF112	RNF112	NA	chr17:19314491-19320589	inner
CUST_48353_PI429285431	0.90523994	A	0.9125451	A	0.994949247106619	0	lncRNA	52210-1_{1..349}	hg19_lincRNAsTranscripts_TCONS_l2_00001297 range=chr1:79561089-79589211 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001297 range=chr1:79561089-79589211 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 79561089	 79561437	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20335_PI429285431	0.8925603	A	1.2441199	A	0.783736395390744	0	lncRNA	21977-2_{3001..3566}	lnc-NAPG-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NAPG-2:1	chr18	 10666821	 10667386	+	lnc-NAPG-2	lnc-NAPG-2:1	ENSG00000260779.1	RP11-856M7.1	FAM38B	NA	chr18:10670244-10676884	inter
CUST_16541_PI429285431	3.6291885	P	4.218667	P	0.664583094642548	0	lncRNA	18241-1_{1..1436}	lnc-SOX21-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOX21-1:2	chr13	 95358391	 95359826	-	lnc-SOX21-1	lnc-SOX21-1:2	XLOC_010695	linc-TGDS-1	SOX21	NA	chr13:95361876-95364389	inter
LNCA_21_P0006605	3.9646297	P	3.9441288	P	1.01431158502966	0	lncRNA	TCONS_00017645	NA	NA	NA	NA	XLOC_008317	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008317), lincRNA [TCONS_00017645]"	chrY:8559335-8557167	hs|Yp11.2	Agilent_HUMAN_G3V2	TCONS_00017645	TCONS_00017645	chrY	  8557167	  8559335	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7855_PI429285431	0.92417353	A	1.1324182	A	0.865589755695686	0	lncRNA	9478-2_{3001..3791}	lnc-IL34-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-IL34-3:1	chr16	 70841337	 70842127	+	lnc-IL34-3	lnc-IL34-3:1	ENSG00000251103	XLOC_011772	VAC14	NA	chr16:70828337-70835061	inter
CUST_37767_PI429285431	2.6751313	A	3.2300298	P	0.680704947179683	0	lncRNA	38864-1_{1..766}	n346275|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1825|NULL|-1.3244900|-0.1451799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346275|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1825|NULL|-1.3244900|-0.1451799	chr1	113392391	113393156	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5610_PI429285431	0.8962592	A	0.9063634	A	0.993020770992019	0	lncRNA	5538-1_{1..194}	"transcript_id ""ENST00000561802.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561802.1"" | genecode_v17"	chr16	 73266661	 73266854	+	ENSG00000261227.2	ENST00000561802.1	AC140912.1	AC140912.1-001	NA	NA	NA	inter
CUST_26037_PI429285431	2.9122093	A	2.688943	A	1.16737356169135	0	lncRNA	27554-1_{1..529}	lnc-PCM1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PCM1-2:1	chr8	 17739790	 17740318	+	lnc-PCM1-2	lnc-PCM1-2:1	ENSG00000253215.1	RP11-156K13.2	FGL1	"hg19_refFlat_FGL1:range=chr8:17722101-177430635'pad=0,hg19_refFlat_FGL1:range=chr8:17722101-177430635'pad=0 3'pad=0 strand=- repeatMasking=none,-98.90chr8:17729790-17750170"	NA	inner
LNCA_21_P0009318	0.9054206	A	0.92707103	A	0.985105108355777	0	lncRNA	TCONS_00025619	NA	NA	NA	NA	XLOC_012456	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012456), lincRNA [TCONS_00025619]"	chr17:36451500-36443046	hs|17q12	Agilent_HUMAN_G3V2	TCONS_00025619	TCONS_00025619	chr17	 36443046	 36451500	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49258_PI429285431	2.702007	A	1.7996054	A	1.86917493967023	0	lncRNA	53077-1_{1..415}	hg19_lincRNAsTranscripts_TCONS_l2_00022386 range=chr5:79287167-79315230 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022386 range=chr5:79287167-79315230 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 79287167	 79287581	+	NA	NA	NA	NA	MTX3	NA	chr5:79277167-79287088	inter
CUST_19700_PI429285431	0.91381526	A	0.9287868	A	0.989676179533715	0	lncRNA	21358-1_{1..3000}	lnc-NEK3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NEK3-1:3	chr13	 52865642	 52868641	-	lnc-NEK3-1	lnc-NEK3-1:3	ENSG00000217576.4	RP11-64P12.8	LOC100652836	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30chr13:52863953-52875692"	NA	inter
CUST_39971_PI429285431	0.8993972	A	1.9522934	A	0.481999581855183	0	lncRNA	40842-1_{1..571}	n407045|NR_024541_3|lncRNA|Homosapiens||RefGeneNoncode|NR_024541_3||-1.0445800|-0.2418764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407045|NR_024541_3|lncRNA|Homosapiens||RefGeneNoncode|NR_024541_3||-1.0445800|-0.2418764	chr6	  3010569	  3011139	-	NA	NA	NA	NA	NQO2	NA	chr6:3000569-3019994	inner
CUST_28765_PI429285431	0.9084579	A	0.91792226	A	0.993461276648622	0	lncRNA	30473-1_{1..423}	n326171|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092803|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092803|-1.2609800|-0.3003528	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326171|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092803|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092803|-1.2609800|-0.3003528	chr1	233159600	233160022	+	NA	NA	NA	NA	PCNXL2	NA	chr1:233149600-233172359	inner
CUST_16313_PI429285431	0.9030874	A	0.907661	A	0.996834841763235	0	lncRNA	18019-1_{1..1359}	lnc-ECHDC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ECHDC3-1:1	chr10	 11721660	 11723018	+	lnc-ECHDC3-1	lnc-ECHDC3-1:1	XLOC_008392	linc-ECHDC3-1	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00"	NA	inter
LNCA_21_P0014457	0.9071019	A	1.554601	A	0.638385991912581	0	lncRNA	XR_109914	XR_109914	XR_109914	NA	NA	LOC643085	uncharacterized LOC643085	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC643085 (LOC643085), miscRNA [XR_109914]"	chr2:96190777-96190718	hs|2q11.1	Agilent_HUMAN_G3V2	XR_109914	XR_109914	chr2	 96190718	 96190777	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45468_PI429285431	12.708893	P	13.053746	P	0.787388201541017	0	lncRNA	49883-1_{1..2918}	"gi|365906261|ref|NR_045721.1| Homo sapiens mannosidase, alpha, class 1B, member 1 (MAN1B1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|365906261|ref|NR_045721.1| Homo sapiens mannosidase, alpha, class 1B, member 1 (MAN1B1), transcript variant 3, non-coding RNA"	Chr9	139981379	139984296	+	11253	NR_045721.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002272	3.6898494	P	3.9732466	P	0.82165393998245	0	lncRNA	TCONS_00003822	NA	NA	NA	NA	XLOC_001630	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001630), lincRNA [TCONS_00003822]"	chr2:113698536-113698595	hs|2q13	Agilent_HUMAN_G3V2	TCONS_00003822	TCONS_00003822	chr2	113698536	113698595	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16566_PI429285431	1.5064454	A	0.9166031	A	1.50508221891958	0	lncRNA	18267-1_{1..442}	lnc-MINA-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MINA-2:2	chr3	 97956121	 97956562	-	lnc-MINA-2	lnc-MINA-2:2	XLOC_003187	linc-GABRR3-2	OR5H6	NA	chr3:97946121-97966217	inter
CUST_39377_PI429285431	5.850849	P	6.148205	P	0.813742360906282	0	lncRNA	40340-1_{1..609}	n386515|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mso.1||5.9902400|-0.0888147	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386515|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mso.1||5.9902400|-0.0888147	chr9	100154851	100155459	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45088_PI429285431	2.4562864	A	1.8016335	A	1.57423715967229	0	lncRNA	49572-1_{1..423}	"gi|310120111|ref|XR_108782.1| PREDICTED: Homo sapiens uncharacterized LOC100130169 (LOC100130169), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120111|ref|XR_108782.1| PREDICTED: Homo sapiens uncharacterized LOC100130169 (LOC100130169), misc_RNA"	NA	NA	NA	NA	NA	XR_108782.1	NA	NA	NA	NA	NA	Unknown
CUST_43902_PI429285431	10.1866455	P	10.320959	P	0.911103274887583	0	lncRNA	48616-1_{1..2375}	"gi|214010242|ref|NR_024518.1| Homo sapiens lectin, mannose-binding 2-like (LMAN2L), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|214010242|ref|NR_024518.1| Homo sapiens lectin, mannose-binding 2-like (LMAN2L), transcript variant 3, non-coding RNA"	Chr2	 97371666	 97374040	-	81562	NR_024518.1	NA	NA	NA	NA	NA	inter
CUST_18575_PI429285431	0.88986593	A	2.1137927	A	0.42811587252723	0	lncRNA	20283-1_{1..1705}	lnc-PUS10-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-PUS10-1:2	chr2	 61108367	 61110071	-	lnc-PUS10-1	lnc-PUS10-1:2	ENSG00000228414	AC010733.4	REL	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80chr2:61098367-61118449"	NA	inter
CUST_35684_PI429285431	3.0444188	A	1.6092018	A	2.7042283864046	0	lncRNA	37103-2_{3001..4260}	n342844|BX647470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5347|NULL|-0.7725010|-0.3169784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342844|BX647470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5347|NULL|-0.7725010|-0.3169784	chr8	 72759337	 72760596	+	NA	NA	NA	NA	TRPA1	"hg19_refFlat_TRPA1:range=chr8:72935141-729876445'pad=0,hg19_refFlat_TRPA1:range=chr8:72935141-729876445'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MSC:range=chr8:72754896-727564135'pad=0,hg19_refFlat_MSC:range=chr8:72754896-727564135'pad=0 3'pad=0 strand=- repeatMasking=none,-102.00chr8:72933486-72978547"	NA	inter
CUST_23110_PI429285431	3.7825313	P	3.6233978	P	1.11661628345579	0	lncRNA	24681-1_{1..570}	lnc-RP11-625H11.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-625H11.1.1-3:1	chr15	 63176157	 63176726	-	lnc-RP11-625H11.1.1-3	lnc-RP11-625H11.1.1-3:1	ENSG00000259370.1	RP11-1069G10.1	NA	NA	NA	inter
CUST_37968_PI429285431	0.91312367	A	0.92745835	A	0.990113156365357	0	lncRNA	39056-1_{1..702}	n346518|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2068|NULL|-1.2990600|-0.3310223	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346518|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2068|NULL|-1.2990600|-0.3310223	chr19	 41960073	 41960774	-	NA	NA	NA	NA	C19orf69	NA	chr19:41950073-41950670	inter
CUST_33509_PI429285431	3.6810918	P	3.7244048	P	0.970423908544613	0	lncRNA	35081-1_{1..1124}	n340248|AL117519|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2709|NULL|-1.1763300|-0.3074703	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340248|AL117519|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2709|NULL|-1.1763300|-0.3074703	chr4	146680159	146681282	-	NA	NA	NA	NA	ZNF827	NA	chr4:146681874-146691273	inter
CUST_6586_PI429285431	1.2324058	A	0.89170194	A	1.2663742801587	0	lncRNA	6534-1_{1..516}	"transcript_id ""ENST00000599382.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599382.1"" | genecode_v17"	chr19	 54949847	 54950362	-	ENSG00000267838.1	ENST00000599382.1	AC008746.12	AC008746.12-001	LENG8	NA	chr19:54960065-54960362	inter
LNCA_21_P0004960	0.8984128	A	0.9099691	A	0.992021779534166	0	lncRNA	TCONS_00011999	NA	NA	NA	NA	XLOC_005513	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005513), lincRNA [TCONS_00011999]"	chr6:156327663-156327722	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_00011999	TCONS_00011999	chr6	156327663	156327722	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00320536	6.3091893	P	6.4688315	P	0.895247071888418	0	lncRNA	XR_109752	XR_109752	XR_109752	NA	Hs.667879	LOC100507580	NA	NA	THC2491876	NA	"PREDICTED: Homo sapiens hypothetical LOC100507580 (LOC100507580), miscRNA [XR_109752]"	chr22:25875203-25875262	hs|22q11.23	Agilent_HUMAN_G3V2	XR_109752	XR_109752	chr22	 25875203	 25875262	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5087_PI429285431	1.6174842	A	2.5576105	A	0.52118725135176	0	lncRNA	5027-1_{1..572}	"transcript_id ""ENST00000553658.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553658.1"" | genecode_v17"	chr15	 20333998	 20334569	-	ENSG00000258410.1	ENST00000553658.1	RP11-173D3.1	RP11-173D3.1-001	NA	NA	NA	inter
CUST_24011_PI429285431	0.9070021	A	1.3613464	A	0.729841807375413	0	lncRNA	25564-1_{1..518}	lnc-CHST2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-CHST2-3:1	chr3	143065828	143066345	+	lnc-CHST2-3	lnc-CHST2-3:1	ENSG00000240012.1	SLC9A9-AS1	SLC9A9	NA	chr3:143055828-143075913	inner
CUST_45318_PI429285431	1.755604	A	2.7144325	A	0.514474508336029	0	lncRNA	49760-1_{1..588}	"gi|397139307|ref|XR_158844.1| PREDICTED: Homo sapiens chromosome 9 open reading frame 133 (C9orf133), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139307|ref|XR_158844.1| PREDICTED: Homo sapiens chromosome 9 open reading frame 133 (C9orf133), misc_RNA"	NA	NA	NA	NA	NA	XR_158844.1	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_DFFB:range=chr1:3774168-38003055'pad=0,hg19_refFlat_DFFB:range=chr1:3774168-38003055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20"	NA	Unknown
CUST_21457_PI429285431	1.4503332	A	1.0438029	A	1.32549414728125	0	lncRNA	23075-1_{1..550}	lnc-MST4.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-MST4.1-2:1	chrX	131803591	131804140	+	lnc-MST4.1-2	lnc-MST4.1-2:1	ENSG00000235849.1	HS6ST2-AS1	HS6ST2	NA	chrX:131793591-131813916	inner
CUST_35507_PI429285431	2.3062403	A	0.921195	A	2.61180158232982	0	lncRNA	36915-2_{3001..6000}	n342611|D21211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5112|NULL|16.5493000|-0.1473824	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342611|D21211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5112|NULL|16.5493000|-0.1473824	chr4	 87518884	 87521883	+	NA	NA	NA	NA	PTPN13	NA	chr4:87515468-87736329	inner
CUST_39599_PI429285431	7.829565	P	7.825538	P	1.00279520301149	0	lncRNA	40543-1_{1..1213}	n387616|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kaj.1||2.8780600|-0.2206856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387616|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kaj.1||2.8780600|-0.2206856	chr7	 32956427	 32957639	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42390_PI429285431	2.551462	A	3.3901699	P	0.559144122978341	0	lncRNA	45084-1_{1..129}	ENST00000410656 ncrna:snoRNA chromosome:GRCh37:10:120820495:120820623:-1 gene:ENSG00000222588 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410656 ncrna:snoRNA chromosome:GRCh37:10:120820495:120820623:-1 gene:ENSG00000222588 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	120820495	120820623	-	ENSG00000222588	ENST00000410656	NA	NA	EIF3A	NA	chr10:120810495-120830623	inner
LNCA_21_P0003937	0.8847213	A	0.8895271	A	0.996674415326817	0	lncRNA	BC028670	NA	BC028670	NA	Hs.676049	XLOC_004849	NA	NA	THC2605937	NA	"BROAD Institute lincRNA (XLOC_004849), lincRNA [TCONS_00009284]"	chr5:65501416-65501357	hs|5q12.3	Agilent_HUMAN_G3V2	BC028670	BC028670	chr5	 65501357	 65501416	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12290_PI429285431	0.8901606	A	0.90524614	A	0.989597979620486	0	lncRNA	13901-1_{1..266}	lnc-RP11-322L20.1.1-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-322L20.1.1-7:3	chr14	 86823838	 86824103	+	lnc-RP11-322L20.1.1-7	lnc-RP11-322L20.1.1-7:3	XLOC_010893	linc-GPR65-4	NA	NA	NA	inter
CUST_43009_PI429285431	6.533333	P	6.9248805	P	0.762311475985075	0	lncRNA	46181-1_{1..129}	ENST00000595640 proj_ncrna:snoRNA chromosome:GRCh37:HG1462_PATCH:114362786:114362914:-1 gene:ENSG00000269023 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000595640 proj_ncrna:snoRNA chromosome:GRCh37:HG1462_PATCH:114362786:114362914:-1 gene:ENSG00000269023 gene_biotype:snoRNA transcript_biotype:snoRNA	chrHG1462_PATCH	114362786	114362914	-	ENSG00000269023	ENST00000595640	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010238	8.654288	P	8.711676	P	0.961002440572028	0	lncRNA	ENST00000495363	NA	NA	NA	NA	FAM165B	"family with sequence similarity 165, member B"	ENST00000495363	NA	GO:0008150|GO:0003674|GO:0016020|GO:0016021|GO:0005575	"BROAD Institute lincRNA (XLOC_013926), lincRNA [TCONS_00029006]"	chr21:35779990-35780049	hs|21q22.11	Agilent_HUMAN_G3V2	ENST00000495363	ENST00000495363	chr21	 35779990	 35780049	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46887_PI429285431	0.8946692	A	0.90721834	A	0.991339320628729	0	lncRNA	51011-1_{1..3000}	"gi|300360581|ref|NR_034041.1| Homo sapiens serine/arginine-rich splicing factor 1 (SRSF1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300360581|ref|NR_034041.1| Homo sapiens serine/arginine-rich splicing factor 1 (SRSF1), transcript variant 3, non-coding RNA"	Chr17	 56078280	 56081279	-	6426	NR_034041.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10"	NA	inter
CUST_45129_PI429285431	2.8494322	A	1.1186526	A	3.3190712503114	0	lncRNA	49609-1_{1..3000}	"gi|197383214|ref|NR_003572.2| Homo sapiens ribosomal protein L23a pseudogene 53 (RPL23AP53), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|197383214|ref|NR_003572.2| Homo sapiens ribosomal protein L23a pseudogene 53 (RPL23AP53), non-coding RNA"	Chr8	   158344	   161343	-	644128	NR_003572.2	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
CUST_34585_PI429285431	1.6589677	A	1.4944348	A	1.12080313791229	0	lncRNA	36043-1_{1..465}	n341469|AF086219|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3939|NULL|0.5690720|-0.2578331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341469|AF086219|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3939|NULL|0.5690720|-0.2578331	chr8	 28968089	 28968553	-	NA	NA	NA	NA	KIF13B	NA	chr8:28958089-29008197	inner
LNCA_19_P00316340	2.3676257	A	4.1817293	P	0.284380884829914	0	lncRNA	XR_108813	XR_108813	XR_108813	NA	NA	LOC100506860	NA	NA	THC2530046	NA	"PREDICTED: Homo sapiens hypothetical LOC100506860, transcript variant 1 (LOC100506860), miscRNA [XR_108813]"	chr7:130606643-130606702	hs|7q32.3	Agilent_HUMAN_G3V2	XR_108813	XR_108813	chr7	130606643	130606702	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11164_PI429285431	8.60486	P	8.7416525	P	0.909539059613809	0	lncRNA	12721-2_{3001..3706}	lnc-ARFGEF2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARFGEF2-2:1	chr20	 47106837	 47107542	+	lnc-ARFGEF2-2	lnc-ARFGEF2-2:1	XLOC_013552	linc-ARFGEF2-3	NA	NA	NA	inter
LNCA_19_P00318561	0.88230836	A	1.7134639	A	0.562078859713306	0	lncRNA	XR_108763	XR_108763	XR_108763	NA	NA	LOC100506516	uncharacterized LOC100506516	ENST00000414621	THC2743649	NA	"PREDICTED: Homo sapiens hypothetical LOC100506516 (LOC100506516), miscRNA [XR_108763]"	chr7:30430592-30430651	hs|7p14.3	Agilent_HUMAN_G3V2	XR_108763	XR_108763	chr7	 30430592	 30430651	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1928_PI429285431	0.9030708	A	0.90541184	A	0.998378630566345	0	lncRNA	1920-1_{1..1715}	"transcript_id ""ENST00000507726.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507726.1"" | genecode_v17"	chr4	147030609	147032323	-	ENSG00000248809.1	ENST00000507726.1	RP11-6L6.3	RP11-6L6.3-002	NA	NA	NA	inter
CUST_50670_PI429285431	0.9176733	A	0.9950625	A	0.947771247655781	0	lncRNA	54345-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00003012 range=chr10:43979980-44021239 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003012 range=chr10:43979980-44021239 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 43979980	 43982979	+	NA	NA	NA	NA	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50"	NA	inter
LNCA_21_P0012819	0.8825182	A	0.88301945	A	0.99965262032604	0	lncRNA	TCONS_l2_00022098	NA	NA	NA	NA	XLOC_l2_011424	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011424), lincRNA [TCONS_l2_00022098]"	chr4:190701552-190701493	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_l2_00022098	TCONS_l2_00022098	chr4	190701493	190701552	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21123_PI429285431	6.62435	P	6.8766184	P	0.839575283237774	0	lncRNA	22749-1_{1..172}	lnc-FNBP1L-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FNBP1L-1:4	chr1	 94066213	 94066384	+	lnc-FNBP1L-1	lnc-FNBP1L-1:4	ENSG00000224093.1	RP5-1033H22.2	BCAR3	NA	chr1:94056213-94076319	inner
CUST_34869_PI429285431	0.9101629	A	1.1549897	A	0.84391710490624	0	lncRNA	36295-1_{1..245}	n341780|AF075108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4257|NULL|-1.1880300|-0.2779941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341780|AF075108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4257|NULL|-1.1880300|-0.2779941	chr9	126168729	126168973	+	NA	NA	NA	NA	DENND1A	NA	chr9:126158729-126178965	inner
CUST_42802_PI429285431	0.8790395	A	0.8785566	A	1.00033477679874	0	lncRNA	45798-1_{1..72}	ENST00000516783 ncrna:snoRNA chromosome:GRCh37:11:82283051:82283122:-1 gene:ENSG00000252592 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516783 ncrna:snoRNA chromosome:GRCh37:11:82283051:82283122:-1 gene:ENSG00000252592 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 82283051	 82283122	-	ENSG00000252592	ENST00000516783	NA	NA	NA	NA	NA	inter
CUST_1589_PI429285431	0.88899255	A	0.89797056	A	0.993796240954016	0	lncRNA	1575-1_{1..621}	"transcript_id ""ENST00000489016.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000489016.1"" | genecode_v17"	chr3	182216052	182216672	-	ENSG00000244247.1	ENST00000489016.1	RP11-139K4.2	RP11-139K4.2-001	NA	NA	NA	inter
CUST_36105_PI429285431	4.2877007	P	4.7228756	P	0.739604085919439	0	lncRNA	37399-1_{1..3000}	n344684|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_233|NULL|-1.4001700|-0.3625463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344684|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_233|NULL|-1.4001700|-0.3625463	chr2	181970579	181973578	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_49501_PI429285431	0.89343095	A	0.900343	A	0.995220390889393	0	lncRNA	53292-1_{1..460}	hg19_lincRNAsTranscripts_TCONS_l2_00024089 range=chr6:23337938-23397703 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024089 range=chr6:23337938-23397703 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 23337938	 23338397	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35571_PI429285431	8.467079	P	8.513255	P	0.968500030919897	0	lncRNA	36986-1_{1..2311}	n342703|AK057023|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5205|NULL|1.5120100|-0.1102514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342703|AK057023|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5205|NULL|1.5120100|-0.1102514	chr17	 40704455	 40706765	-	NA	NA	NA	NA	COASY	"hg19_refFlat_HSD17B1:range=chr17:40704952-407069565'pad=0,hg19_refFlat_HSD17B1:range=chr17:40704952-407069565'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.50chr17:40714092-40716766"	NA	inner
CUST_42576_PI429285431	0.90550464	A	1.696212	A	0.57806059669516	0	lncRNA	45413-1_{1..78}	ENST00000363953 ncrna:snoRNA chromosome:GRCh37:14:101418193:101418270:1 gene:ENSG00000200823 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363953 ncrna:snoRNA chromosome:GRCh37:14:101418193:101418270:1 gene:ENSG00000200823 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101418193	101418270	+	ENSG00000200823	ENST00000363953	NA	NA	NA	NA	NA	inter
CUST_24191_PI429285431	3.5153832	P	2.93219	A	1.49816154884597	0	lncRNA	25742-1_{1..673}	lnc-MYL4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYL4-1:1	chr17	 45248326	 45248998	+	lnc-MYL4-1	lnc-MYL4-1:1	ENSG00000261872.1	RP5-867C24.5	CDC27	"hg19_refFlat_CDC27:range=chr17:45198301-452665385'pad=0,hg19_refFlat_CDC27:range=chr17:45198301-452665385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chr17:45238326-45258415"	NA	inner
CUST_38687_PI429285431	8.5433855	P	8.78875	P	0.843602631186612	0	lncRNA	39685-1_{1..3000}	n384081|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zom.1||0.9320830|-0.1502992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384081|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zom.1||0.9320830|-0.1502992	chr22	 18958026	 18961025	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80"	NA	inter
CUST_763_PI429285431	1.0377158	A	1.8608366	A	0.565217954649662	0	lncRNA	754-1_{1..578}	"transcript_id ""ENST00000412606.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412606.1"" | genecode_v17"	chr2	 12454443	 12455020	+	ENSG00000224184.1	ENST00000412606.1	AC096559.1	AC096559.1-002	NA	NA	NA	inter
CUST_49209_PI429285431	0.90049136	A	0.90479136	A	0.997023904502027	0	lncRNA	53028-1_{1..1246}	hg19_lincRNAsTranscripts_TCONS_l2_00020890 range=chr4:174620314-174624204 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020890 range=chr4:174620314-174624204 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	174620314	174621559	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33851_PI429285431	11.917989	P	10.637553	P	2.42912376863974	0	lncRNA	35396-1_{1..2015}	n340637|AK092789|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3099|NULL|-0.9603950|-0.1812603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340637|AK092789|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3099|NULL|-0.9603950|-0.1812603	chr5	134734969	134736983	+	NA	NA	NA	NA	H2AFY	NA	chr5:134724969-134735577	inner
CUST_20047_PI429285431	5.2222133	P	4.7229557	P	1.41348600594097	0	lncRNA	21698-1_{1..588}	lnc-SSTR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SSTR2-1:1	chr17	 71192646	 71193233	+	lnc-SSTR2-1	lnc-SSTR2-1:1	ENSG00000264860.1	RP11-143K11.5	COG1	NA	chr17:71189173-71202732	inner
LNCA_21_P0006977	0.8887974	A	0.8899674	A	0.999189346555932	0	lncRNA	TCONS_00018456	NA	NA	NA	NA	XLOC_008753	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008753), lincRNA [TCONS_00018456]"	chr10:26924933-26924874	hs|10p12.1	Agilent_HUMAN_G3V2	TCONS_00018456	TCONS_00018456	chr10	 26924874	 26924933	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11370_PI429285431	0.9234465	A	0.905795	A	1.01231024233627	0	lncRNA	12934-1_{1..540}	lnc-RTL1-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RTL1-7:2	chr14	101874080	101874619	-	lnc-RTL1-7	lnc-RTL1-7:2	XLOC_011135	linc-RTL1-3	NA	NA	NA	inter
CUST_46892_PI429285431	1.8944994	A	1.6004262	A	1.22609706864612	0	lncRNA	51015-1_{1..2468}	"gi|336176047|ref|NR_038414.1| Homo sapiens BZRAP1 antisense RNA 1 (BZRAP1-AS1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336176047|ref|NR_038414.1| Homo sapiens BZRAP1 antisense RNA 1 (BZRAP1-AS1), transcript variant 5, non-coding RNA"	Chr17	 56414563	 56417030	+	100506779	NR_038414.1	NA	NA	NA	"hg19_refFlat_SUPT4H1:range=chr17:56423607-564294965'pad=0,hg19_refFlat_SUPT4H1:range=chr17:56423607-564294965'pad=0 3'pad=0 strand=- repeatMasking=none,-97.40"	NA	inter
CUST_23871_PI429285431	0.9057754	A	0.8887844	A	1.01184688877788	0	lncRNA	25431-1_{1..568}	lnc-SERPINA4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SERPINA4-1:1	chr14	 94930671	 94931238	+	lnc-SERPINA4-1	lnc-SERPINA4-1:1	ENSG00000256357.1	RP11-349I1.2	SERPINA9	NA	chr14:94929058-94941067	inner
CUST_30967_PI429285431	0.8826506	A	0.88514084	A	0.998275386023816	0	lncRNA	32755-1_{1..207}	n337094|DQ442053|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343369|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343369|-1.1212300|-0.1867298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337094|DQ442053|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343369|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343369|-1.1212300|-0.1867298	chr12	 41221896	 41222102	+	NA	NA	NA	NA	CNTN1	NA	chr12:41211896-41232103	inner
CUST_46273_PI429285431	7.895336	P	7.558707	P	1.26280248082736	0	lncRNA	50512-1_{1..902}	"gi|386642900|ref|NR_044995.2| Homo sapiens GAS6 antisense RNA 1 (GAS6-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386642900|ref|NR_044995.2| Homo sapiens GAS6 antisense RNA 1 (GAS6-AS1), non-coding RNA"	Chr13	114518583	114519484	+	650669	NR_044995.2	NA	NA	NA	"hg19_refFlat_GAS6:range=chr13:114523837-1145668935'pad=0,hg19_refFlat_GAS6:range=chr13:114523837-1145668935'pad=0 3'pad=0 strand=- repeatMasking=none,-94.10"	NA	inter
CUST_7070_PI429285431	8.463875	P	8.352209	P	1.08047523100952	0	lncRNA	7015-1_{1..220}	"transcript_id ""ENST00000457716.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457716.1"" | genecode_v17"	chrX	 70939766	 70939985	+	ENSG00000238106.1	ENST00000457716.1	RP11-402P6.7	RP11-402P6.7-001	CXorf49	NA	chrX:70934224-70938135	inter
LNCA_21_P0001263	2.695603	A	2.458407	A	1.17869953133684	0	lncRNA	TCONS_00000840	NA	NA	NA	NA	XLOC_000055	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000055), lincRNA [TCONS_00000840]"	chr1:12588513-12588572	hs|1p36.22	Agilent_HUMAN_G3V2	TCONS_00000840	TCONS_00000840	chr1	 12588513	 12588572	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32096_PI429285431	0.88404727	A	0.89765143	A	0.990614634915626	0	lncRNA	33801-1_{1..2167}	n338659|BC040923|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1073|NULL|-1.1553600|-0.4470154	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338659|BC040923|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1073|NULL|-1.1553600|-0.4470154	chr13	 39106136	 39108302	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13078_PI429285431	9.14175	P	9.427836	P	0.820124021607388	0	lncRNA	14705-1_{1..1481}	lnc-F13A1-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-F13A1-3:6	chr6	  6711105	  6712585	-	lnc-F13A1-3	lnc-F13A1-3:6	XLOC_005595	linc-F13A1-1	NA	NA	NA	inter
CUST_76_PI429201921	4.5052934	P	4.658446	P	0.899283186103579	0	lncRNA	78-1_{1..2332}	TC04002448.hg.1	 TCONS_l2_00021047-XLOC_l2_011041 // Broad TUCP // linc-ACOX3 chr4:-:8747130-8749455 // chr4 // 100 // 100 // 0 // --- // 0/// TCONS_l2_00021046-XLOC_l2_011041 // Broad TUCP // linc-ACOX3 chr4:-:8747124-8749429 // chr4 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00021823-XLOC_l2_011041 // Broad TUCP // linc-ACOX3 chr4:-:8747122-8747759 // chr4 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr4:-:8747122-8747759	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00021823-XLOC_l2_011041	linc-ACOX3	chr4	  8747122	  8747759	-	NA	NA	NA	NA	CTDP1	NA	chr18:77439801-77449745	Unknown
LNCA_21_P0010852	0.90214753	A	0.9254204	A	0.98399789198481	0	lncRNA	TCONS_l2_00003356	NA	NA	NA	NA	XLOC_l2_001826	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001826), lincRNA [TCONS_l2_00003356]"	chr10:3299426-3299367	hs|10p15.2	Agilent_HUMAN_G3V2	TCONS_l2_00003356	TCONS_l2_00003356	chr10	  3299367	  3299426	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43274_PI429285431	2.2024128	A	0.90428233	A	2.45910011295753	0	lncRNA	48093-1_{1..1630}	ENST00000586101 havana:sense_intronic chromosome:GRCh37:6:170170509:170172138:1 gene:ENSG00000266896 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000586101 havana:sense_intronic chromosome:GRCh37:6:170170509:170172138:1 gene:ENSG00000266896 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr6	170170509	170172138	+	ENSG00000266896	ENST00000586101	NA	NA	C6orf70	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20chr6:170160509-170181617"	NA	inner
CUST_38259_PI429285431	0.90112454	A	0.9212544	A	0.986143935618769	0	lncRNA	39316-2_{3001..3628}	n381802|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qfd.1||-0.0048662|-0.1593416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381802|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qfd.1||-0.0048662|-0.1593416	chr11	129567512	129568139	+	NA	NA	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.59;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-32.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
LNCA_21_P0004996	3.3115556	P	3.502884	P	0.875798934672093	0	lncRNA	TCONS_00012063	NA	NA	NA	NA	XLOC_005592	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005592), lincRNA [TCONS_00012063]"	chr6:5047671-5047612	hs|6p25.1	Agilent_HUMAN_G3V2	TCONS_00012063	TCONS_00012063	chr6	  5047612	  5047671	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007661	0.9065715	A	1.4734917	A	0.675056331017436	0	lncRNA	TCONS_00020640	NA	NA	NA	NA	XLOC_009942	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009942), lincRNA [TCONS_00020640]"	chr12:127544755-127544814	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020640	TCONS_00020640	chr12	127544755	127544814	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004201	0.90723586	A	1.0455438	A	0.90858416051134	0	lncRNA	TCONS_00009840	NA	NA	NA	NA	XLOC_004256	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004256), lincRNA [TCONS_00009840]"	chr5:2932333-2932392	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00009840	TCONS_00009840	chr5	  2932333	  2932392	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13153_PI429285431	15.636877	P	15.143491	P	1.40774497388418	0	lncRNA	14780-1_{1..273}	lnc-MINA-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MINA-3:2	chr3	 96336802	 96337074	-	lnc-MINA-3	lnc-MINA-3:2	XLOC_003181	linc-DHFRL1-4	NA	NA	NA	inter
CUST_22517_PI429285431	4.2721567	P	4.7326455	P	0.726739989918887	0	lncRNA	24104-1_{1..582}	lnc-CDC42SE1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDC42SE1-1:1	chr1	151042740	151043321	-	lnc-CDC42SE1-1	lnc-CDC42SE1-1:1	ENSG00000242557.1	RP11-316M1.11	GABPB2	"hg19_refFlat_MLLT11:range=chr1:151039701-1510399735'pad=0,hg19_refFlat_MLLT11:range=chr1:151039701-1510399735'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10chr1:151043080-151052801"	NA	inter
CUST_33351_PI429285431	10.494746	P	10.528873	P	0.976622553395572	0	lncRNA	34932-1_{1..1126}	n340069|AF143875|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2524|NULL|-0.9734830|-0.3340646	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340069|AF143875|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2524|NULL|-0.9734830|-0.3340646	chr10	 74994300	 74995425	-	NA	NA	NA	NA	FAM149B1	"hg19_refFlat_FAM149B1:range=chr10:74928098-750007775'pad=0,hg19_refFlat_FAM149B1:range=chr10:74928098-750007775'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.00chr10:74984300-75001939"	NA	inner
CUST_15394_PI429285431	1.1861477	A	1.352552	A	0.891060750569717	0	lncRNA	17079-1_{1..353}	lnc-C8orf74-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C8orf74-3:2	chr8	 10714568	 10714920	+	lnc-C8orf74-3	lnc-C8orf74-3:2	XLOC_006709	linc-MTMR9	NA	NA	NA	inter
CUST_48841_PI429285431	7.257594	P	7.276178	P	0.987201163541742	0	lncRNA	52679-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00018696 range=chr3:94654298-94871009 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018696 range=chr3:94654298-94871009 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	 94654298	 94657297	+	NA	NA	NA	NA	NA	"hg19_refFlat_WDR82:range=chr3:52291506-523123775'pad=0,hg19_refFlat_WDR82:range=chr3:52291506-523123775'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40"	NA	inter
CUST_24434_PI429285431	2.4249902	A	2.3693733	A	1.03930341703096	0	lncRNA	25987-1_{1..846}	lnc-GCNT4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-GCNT4-1:1	chr5	 74319656	 74320501	-	lnc-GCNT4-1	lnc-GCNT4-1:1	ENSG00000249856.1	CTD-2503O16.4	GCNT4	NA	chr5:74309656-74326724	inter
CUST_25604_PI429285431	3.981022	P	4.3734655	P	0.761838181903212	0	lncRNA	27133-1_{1..826}	lnc-RHOF-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RHOF-1:3	chr12	122240785	122241610	-	lnc-RHOF-1	lnc-RHOF-1:3	ENSG00000256392.1	RP11-347I19.3	SETD1B	NA	chr12:122242638-122251309	inter
CUST_12497_PI429285431	2.9040668	A	3.2628593	A	0.779816994095659	0	lncRNA	14109-1_{1..596}	lnc-C10orf31-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf31-8:2	chr10	 10504152	 10504747	-	lnc-C10orf31-8	lnc-C10orf31-8:2	XLOC_008729	linc-KIN-7	NA	NA	NA	inter
LNCA_21_P0009692	3.7071881	P	5.001797	P	0.407646660100709	0	lncRNA	TCONS_00026944	NA	NA	NA	NA	XLOC_013005	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013005), lincRNA [TCONS_00026944]"	chr19:21166816-21166875	hs|19p12	Agilent_HUMAN_G3V2	TCONS_00026944	TCONS_00026944	chr19	 21166816	 21166875	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29973_PI429285431	6.4293785	P	7.1084123	P	0.62458342968065	0	lncRNA	31739-1_{1..296}	n334226|S62643|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216001|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216001|1.7530300|-0.0626629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334226|S62643|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216001|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216001|1.7530300|-0.0626629	chr16	 89989831	 89990126	+	NA	NA	NA	NA	TUBB3	NA	chr16:89988417-90002505	inner
CUST_14292_PI429285431	0.89929384	A	0.90312076	A	0.997350896276296	0	lncRNA	15951-1_{1..759}	lnc-CDH9-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH9-2:2	chr5	 27413322	 27414080	-	lnc-CDH9-2	lnc-CDH9-2:2	XLOC_004761	linc-CDH9-3	NA	NA	NA	inter
CUST_20659_PI429285431	1.5554717	A	2.5146675	A	0.514343543420486	0	lncRNA	22298-1_{1..490}	lnc-SP140-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SP140-2:1	chr2	231038404	231038893	+	lnc-SP140-2	lnc-SP140-2:1	ENSG00000225963.1	AC009950.2	SP110	"hg19_refFlat_SP110:range=chr2:231033840-2310816425'pad=0,hg19_refFlat_SP110:range=chr2:231033840-2310816425'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80chr2:231033634-231048822"	NA	inner
CUST_17317_PI429285431	0.8942625	A	0.89683324	A	0.998219685460407	0	lncRNA	19035-1_{1..633}	lnc-CCL13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCL13-1:1	chr17	 32739154	 32739786	+	lnc-CCL13-1	lnc-CCL13-1:1	XLOC_012174	linc-TMEM132E-3	NA	NA	NA	inter
LNCA_21_P0009916	0.89912975	A	0.91116977	A	0.991689221145504	0	lncRNA	ENST00000458293	NA	NA	NA	NA	XLOC_013810	NA	ENST00000458293	NA	NA	"BROAD Institute lincRNA (XLOC_013810), lincRNA [TCONS_00028071]"	chr20:55306435-55306376	hs|20q13.31	Agilent_HUMAN_G3V2	ENST00000458293	ENST00000458293	chr20	 55306376	 55306435	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20243_PI429285431	0.9015987	A	0.9186661	A	0.988239481731592	0	lncRNA	21886-1_{1..621}	lnc-MRP63-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MRP63-3:1	chr13	 21867552	 21868172	+	lnc-MRP63-3	lnc-MRP63-3:1	ENSG00000239501.1	RP11-101P17.6	NA	NA	NA	inter
LNCA_21_P0012779	0.8965676	A	0.9073802	A	0.992533292200508	0	lncRNA	BC014345	NA	BC014345	NA	Hs.518877	XLOC_l2_011195	NA	NA	THC2616215	NA	"BROAD Institute lincRNA (XLOC_l2_011195), lincRNA [TCONS_l2_00021928]"	chr4:95039032-95038973	hs|4q22.2	Agilent_HUMAN_G3V2	BC014345	BC014345	chr4	 95038973	 95039032	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39880_PI429285431	0.92447686	A	0.9278001	A	0.997699156571067	0	lncRNA	40770-2_{3001..6000}	n406543|NR_024052_6|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_6||-1.2453200|-0.3296761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406543|NR_024052_6|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_6||-1.2453200|-0.3296761	chr6	  1770196	  1773195	-	NA	NA	NA	NA	GMDS	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10chr6:1757196-1816933"	NA	inner
CUST_5631_PI429285431	2.8797722	A	0.9139453	A	3.90636538725623	0	lncRNA	5559-1_{1..416}	"transcript_id ""ENST00000567665.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567665.1"" | genecode_v17"	chr16	 79832431	 79832846	+	ENSG00000260876.1	ENST00000567665.1	RP11-345M22.1	RP11-345M22.1-004	NA	NA	NA	inter
CUST_26322_PI429285431	2.531266	A	3.2766235	P	0.596520035465111	0	lncRNA	27829-1_{1..473}	lnc-TRAPPC8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRAPPC8-2:1	chr18	 29671818	 29672290	-	lnc-TRAPPC8-2	lnc-TRAPPC8-2:1	ENSG00000265008.1	RP11-53I6.3	RNF138	NA	chr18:29661818-29682082	inner
CUST_21040_PI429285431	8.450204	P	8.730764	P	0.823271392221531	0	lncRNA	22667-1_{1..579}	lnc-ERICH1-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ERICH1-7:3	chr8	  1711189	  1711767	-	lnc-ERICH1-7	lnc-ERICH1-7:3	ENSG00000253982.1	CTD-2336O2.1	CLN8	NA	chr8:1711870-1721463	inter
LNCA_19_P00318544	0.8886485	A	1.408822	A	0.697287971558932	0	lncRNA	ENST00000455821	NA	NA	NA	NA	XLOC_002977	NA	ENST00000455821	THC2742622	NA	"BROAD Institute lincRNA (XLOC_002977), lincRNA [TCONS_00005698]"	chr3:193967541-193967600	hs|3q29	Agilent_HUMAN_G3V2	ENST00000455821	ENST00000455821	chr3	193967541	193967600	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28771_PI429285431	0.89676803	A	1.4082117	A	0.701520092344806	0	lncRNA	30478-2_{3001..3564}	n326176|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092708|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092708|-0.3473520|-0.3012108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326176|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092708|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092708|-0.3473520|-0.3012108	chr1	232874891	232875454	-	NA	NA	NA	NA	NA	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
CUST_21912_PI429285431	7.543503	P	7.6681957	P	0.917199389655866	0	lncRNA	23521-1_{1..809}	lnc-RP11-93B14.6.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-93B14.6.1-2:1	chr20	 61297737	 61298545	-	lnc-RP11-93B14.6.1-2	lnc-RP11-93B14.6.1-2:1	ENSG00000232803.1	RP11-93B14.5	SLCO4A1	"hg19_refFlat_SLCO4A1:range=chr20:61287807-613032455'pad=0,hg19_refFlat_SLCO4A1:range=chr20:61287807-613032455'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90chr20:61287737-61303647"	NA	inner
CUST_44826_PI429285431	0.89039236	A	0.9005725	A	0.992968502140636	0	lncRNA	49357-1_{1..2083}	"gi|336088643|ref|NR_038408.1| Homo sapiens uncharacterized LOC100128176 (LOC100128176), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336088643|ref|NR_038408.1| Homo sapiens uncharacterized LOC100128176 (LOC100128176), non-coding RNA"	Chr6	149275395	149277477	-	100128176	NR_038408.1	NA	NA	NA	NA	NA	inter
CUST_47572_PI429285431	9.171203	P	8.812087	P	1.28263972935724	0	lncRNA	51577-1_{1..977}	"gi|259013564|ref|NR_026545.2| Homo sapiens apolipoprotein O (APOO), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|259013564|ref|NR_026545.2| Homo sapiens apolipoprotein O (APOO), transcript variant 2, non-coding RNA"	ChrX	 23851465	 23852441	-	79135	NR_026545.2	NA	NA	NA	NA	NA	inter
CUST_44537_PI429285431	7.3719306	P	6.517673	P	1.80782822093592	0	lncRNA	49130-1_{1..3000}	"gi|402478651|ref|NR_073105.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402478651|ref|NR_073105.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 4, non-coding RNA"	Chr5	 52285156	 52288155	+	3673	NR_073105.1	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.21;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50"	NA	inter
CUST_41914_PI429285431	0.8949295	A	0.9091814	A	0.99016996942441	0	lncRNA	43652-1_{1..79}	ENST00000401119 ncrna:miRNA chromosome:GRCh37:1:154166141:154166219:-1 gene:ENSG00000215938 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401119 ncrna:miRNA chromosome:GRCh37:1:154166141:154166219:-1 gene:ENSG00000215938 gene_biotype:miRNA transcript_biotype:miRNA	chr1	154166141	154166219	-	ENSG00000215938	ENST00000401119	NA	NA	TPM3	NA	chr1:154156141-154164609	inter
CUST_22859_PI429285431	5.2462826	P	5.569114	P	0.79949925806587	0	lncRNA	24437-1_{1..3000}	lnc-TC2N-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TC2N-1:1	chr14	 92223103	 92226102	-	lnc-TC2N-1	lnc-TC2N-1:1	ENSG00000260711.1	RP11-747H7.3	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80"	NA	inter
CUST_35596_PI429285431	2.7696536	A	2.5996451	A	1.12506511327283	0	lncRNA	37011-1_{1..2446}	n342735|BC067890|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5238|NULL|2.2626600|-0.2149832	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342735|BC067890|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5238|NULL|2.2626600|-0.2149832	chr6	 29968787	 29971232	-	NA	NA	NA	NA	ZNRD1	NA	chr6:30029036-30032686	inter
CUST_43545_PI429285431	4.9385295	P	1.4795824	A	10.9963063502763	0	lncRNA	48324-1_{1..3000}	"gi|300795197|ref|NR_034072.1| Homo sapiens seryl-tRNA synthetase (SARS), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300795197|ref|NR_034072.1| Homo sapiens seryl-tRNA synthetase (SARS), transcript variant 2, non-coding RNA"	Chr1	109756515	109759514	+	6301	NR_034072.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.21;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30"	NA	inter
CUST_36204_PI429285431	0.8828978	A	0.89179695	A	0.993850564918065	0	lncRNA	37461-1_{1..3000}	n344750|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_299|NULL|-1.2893800|-0.2058152	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344750|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_299|NULL|-1.2893800|-0.2058152	chr10	131857147	131860146	-	NA	NA	NA	NA	NA	"hg19_refFlat_CTAGE6P:range=chr7:143452418-1434547515'pad=0,hg19_refFlat_CTAGE6P:range=chr7:143452418-1434547515'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CTAGE9:range=chr6:132029824-1320321575'pad=0,hg19_refFlat_CTAGE9:range=chr6:132029824-1320321575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CTAGE4:range=chr7:143880597-1438829305'pad=0,hg19_refFlat_CTAGE4:range=chr7:143880597-1438829305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_CTAGE5:range=chr14:39736664-398194685'pad=0,hg19_refFlat_CTAGE5:range=chr14:39736664-398194685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CTAGE15P:range=chr7:143268911-1432712445'pad=0,hg19_refFlat_CTAGE15P:range=chr7:143268911-1432712445'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CTAGE4:range=chr7:143964010-1439663435'pad=0,hg19_refFlat_CTAGE4:range=chr7:143964010-1439663435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CTAGE5:range=chr14:39746162-398194685'pad=0,hg19_refFlat_CTAGE5:range=chr14:39746162-398194685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CTAGE5:range=chr14:39748676-398194685'pad=0,hg19_refFlat_CTAGE5:range=chr14:39748676-398194685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CTAGE1:range=chr18:19995537-199977745'pad=0,hg19_refFlat_CTAGE1:range=chr18:19995537-199977745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_CTAGE5:range=chr14:39734599-398194685'pad=0,hg19_refFlat_CTAGE5:range=chr14:39734599-398194685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40"	NA	inter
CUST_32415_PI429285431	2.1530836	A	2.53934	A	0.765112394805398	0	lncRNA	34091-1_{1..1036}	n339010|CR594528|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1439|NULL|-0.7426550|-0.0588342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339010|CR594528|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1439|NULL|-0.7426550|-0.0588342	chr16	   704991	   706026	-	NA	NA	NA	NA	WDR90	"hg19_refFlat_WDR90:range=chr16:699417-7175895'pad=0,hg19_refFlat_WDR90:range=chr16:699417-7175895'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.20chr16:699363-716194"	NA	inner
CUST_7431_PI429285431	1.0953429	A	1.4097152	A	0.804200813149403	0	lncRNA	9073-1_{1..2944}	lnc-TRPV6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRPV6-2:1	chr7	142494924	142497867	-	lnc-TRPV6-2	lnc-TRPV6-2:1	ENSG00000246032	AC104597.1	NA	NA	NA	inter
CUST_30158_PI429285431	6.3757334	P	6.393828	P	0.987536104878097	0	lncRNA	31932-1_{1..303}	n334832|AJ297363|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246735|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246735|-0.1640390|-0.0883131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334832|AJ297363|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246735|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246735|-0.1640390|-0.0883131	chrX	102585158	102585460	+	NA	NA	NA	NA	TCEAL7	NA	chrX:102585114-102587251	inner
CUST_17797_PI429285431	1.1595486	A	0.8833168	A	1.21102764596819	0	lncRNA	19529-1_{1..743}	lnc-KDM4C-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KDM4C-3:1	chr9	  7178524	  7179266	+	lnc-KDM4C-3	lnc-KDM4C-3:1	XLOC_007276	linc-TYRP1-7	KDM4C	NA	chr9:7168524-7175648	inter
LNCA_21_P0002061	8.01976	P	7.953863	P	1.04673554850203	0	lncRNA	ENST00000451698	NA	NA	NA	NA	XLOC_002140	NA	ENST00000451698	NA	NA	"BROAD Institute lincRNA (XLOC_002140), lincRNA [TCONS_00003313]"	chr2:66924356-66924297	hs|2p14	Agilent_HUMAN_G3V2	ENST00000451698	ENST00000451698	chr2	 66924297	 66924356	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00317420	1.6881421	A	0.8836444	A	1.74653759775941	0	lncRNA	ENST00000492522	NA	NA	NA	NA	XLOC_012227	NA	ENST00000492522	NA	NA	"BROAD Institute lincRNA (XLOC_012227), lincRNA [TCONS_00025176]"	chr17:46782986-46783045	hs|17q21.32	Agilent_HUMAN_G3V2	ENST00000492522	ENST00000492522	chr17	 46782986	 46783045	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42744_PI429285431	8.842518	P	8.945613	P	0.931033510202666	0	lncRNA	45697-1_{1..76}	ENST00000408573 ncrna:snoRNA chromosome:GRCh37:6:133137941:133138016:1 gene:ENSG00000221500 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408573 ncrna:snoRNA chromosome:GRCh37:6:133137941:133138016:1 gene:ENSG00000221500 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	133137941	133138016	+	ENSG00000221500	ENST00000408573	NA	NA	RPS12	NA	chr6:133135708-133138703	inner
CUST_1102_PI429285431	0.91392493	A	0.92288435	A	0.993809046703412	0	lncRNA	1091-1_{1..944}	"transcript_id ""ENST00000597670.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597670.1"" | genecode_v17"	chr2	145425579	145426522	+	ENSG00000226674.3	ENST00000597670.1	AC074093.1	AC074093.1-037	NA	NA	NA	inter
CUST_22546_PI429285431	0.8952203	A	0.89618677	A	0.999330318381301	0	lncRNA	24133-1_{1..569}	lnc-UGT2B28-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UGT2B28-1:1	chr4	 70080191	 70080759	+	lnc-UGT2B28-1	lnc-UGT2B28-1:1	ENSG00000250696.1	RP11-704M14.1	UGT2B11	"hg19_refFlat_UGT2B17:range=chr4:69403343-694342025'pad=0,hg19_refFlat_UGT2B17:range=chr4:69403343-694342025'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00;hg19_refFlat_UGT2B7:range=chr4:69962239-699784545'pad=0,hg19_refFlat_UGT2B7:range=chr4:69962239-699784545'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_UGT2B10:range=chr4_ctg9_hap1:582825-5879745'pad=0,hg19_refFlat_UGT2B10:range=chr4_ctg9_hap1:582825-5879745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_UGT2B10:range=chr4:69870574-698860885'pad=0,hg19_refFlat_UGT2B10:range=chr4:69870574-698860885'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_UGT2B11:range=chr4:70066158-700804405'pad=0,hg19_refFlat_UGT2B11:range=chr4:70066158-700804405'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_UGT2B15:range=chr4_ctg9_hap1:225423-2489235'pad=0,hg19_refFlat_UGT2B15:range=chr4_ctg9_hap1:225423-2489235'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_UGT2B15:range=chr4:69512822-695363365'pad=0,hg19_refFlat_UGT2B15:range=chr4:69512822-695363365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_UGT2B28:range=chr4:70146219-701605275'pad=0,hg19_refFlat_UGT2B28:range=chr4:70146219-701605275'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_UGT2B4:range=chr4:70346352-703615795'pad=0,hg19_refFlat_UGT2B4:range=chr4:70346352-703615795'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_UGT2B17:range=chr4_ctg9_hap1:225423-2489235'pad=0,hg19_refFlat_UGT2B17:range=chr4_ctg9_hap1:225423-2489235'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_UGT2B10:range=chr4_ctg9_hap1:393989-4088485'pad=0,hg19_refFlat_UGT2B10:range=chr4_ctg9_hap1:393989-4088485'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_UGT2B10:range=chr4:69681738-696965975'pad=0,hg19_refFlat_UGT2B10:range=chr4:69681738-696965975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90chr4:70070191-70080449"	NA	inner
CUST_13003_PI429285431	0.8843817	A	1.0271614	A	0.905772284179391	0	lncRNA	14630-1_{1..801}	lnc-HS3ST3B1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HS3ST3B1-1:1	chr17	 14285109	 14285909	+	lnc-HS3ST3B1-1	lnc-HS3ST3B1-1:1	XLOC_012116	linc-ZNF286A-6	NA	NA	NA	inter
LNCA_21_P0005133	0.88674897	A	1.3553514	A	0.722664319400489	0	lncRNA	THC2720714	NA	NA	NA	NA	XLOC_005465	NA	NA	THC2720714	NA	"BROAD Institute lincRNA (XLOC_005465), lincRNA [TCONS_00012600]"	chr6:132481996-132482055	hs|6q23.2	Agilent_HUMAN_G3V2	THC2720714	THC2720714	chr6	132481996	132482055	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003205	4.576774	P	4.450867	P	1.09119353351962	0	lncRNA	TCONS_00006752	NA	NA	NA	NA	XLOC_003384	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003384), lincRNA [TCONS_00006752]"	chr3:193919557-193919498	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00006752	TCONS_00006752	chr3	193919498	193919557	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36556_PI429285431	0.91769314	A	0.9227797	A	0.996480473381732	0	lncRNA	37752-1_{1..698}	n345054|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_603|NULL|-1.5259100|-0.2549259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345054|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_603|NULL|-1.5259100|-0.2549259	chr9	 97067716	 97068413	+	NA	NA	NA	NA	ZNF169	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-29.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SSH1:range=chr12:109185876-1092211815'pad=0,hg19_refFlat_SSH1:range=chr12:109185876-1092211815'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_SSH1:range=chr12:109185876-1092512725'pad=0,hg19_refFlat_SSH1:range=chr12:109185876-1092512725'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40chr9:97057716-97065291"	NA	inter
CUST_2430_PI429285431	1.6242621	A	1.4492433	A	1.12897911662568	0	lncRNA	2422-1_{1..455}	"transcript_id ""ENST00000519821.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519821.1"" | genecode_v17"	chr5	172989481	172989935	+	ENSG00000253768.1	ENST00000519821.1	CTB-33O18.1	CTB-33O18.1-001	NA	NA	NA	inter
LNCA_21_P0009098	0.88895166	A	1.4329755	A	0.685855310697248	0	lncRNA	TCONS_00024840	NA	NA	NA	NA	XLOC_011719	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011719), lincRNA [TCONS_00024840]"	chr16:51056145-51069467	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00024840	TCONS_00024840	chr16	 51056145	 51069467	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28928_PI429285431	0.90888894	A	0.9174965	A	0.994051457113645	0	lncRNA	30645-1_{1..469}	n326353|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080770|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080770|-1.0865000|-0.2865277	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326353|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080770|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080770|-1.0865000|-0.2865277	chr1	161496263	161496731	+	NA	NA	NA	NA	FCGR2A	NA	chr1:161486263-161489360	inner
CUST_41888_PI429285431	0.8896893	A	0.88632095	A	1.00233748998557	0	lncRNA	43581-1_{1..142}	ENST00000408503 ncrna:miRNA chromosome:GRCh37:5:153726666:153726807:1 gene:ENSG00000221430 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408503 ncrna:miRNA chromosome:GRCh37:5:153726666:153726807:1 gene:ENSG00000221430 gene_biotype:miRNA transcript_biotype:miRNA	chr5	153726666	153726807	+	ENSG00000221430	ENST00000408503	NA	NA	GALNT10	NA	chr5:153716666-153736807	inner
CUST_12780_PI429285431	2.3642533	A	2.1320815	A	1.17460183762701	0	lncRNA	14405-1_{1..891}	lnc-AC018816.3.1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC018816.3.1-6:1	chr3	  5675129	  5676019	-	lnc-AC018816.3.1-6	lnc-AC018816.3.1-6:1	XLOC_003026	linc-SUMF1-3	NA	NA	NA	inter
CUST_234_PI429285431	0.8896533	A	0.8959668	A	0.995633376819128	0	lncRNA	225-1_{1..289}	"transcript_id ""ENST00000447150.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447150.1"" | genecode_v17"	chr1	 54881929	 54882217	+	ENSG00000232245.1	ENST00000447150.1	RP4-705F19.1	RP4-705F19.1-001	SSBP3	NA	chr1:54871929-54872092	inter
CUST_11303_PI429285431	0.90785736	A	0.9089048	A	0.999274233413262	0	lncRNA	12866-1_{1..297}	lnc-TRPM6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRPM6-3:1	chr9	 76889913	 76890209	-	lnc-TRPM6-3	lnc-TRPM6-3:1	XLOC_007739	linc-ALDH1A1-5	NA	NA	NA	inter
CUST_50131_PI429285431	11.40142	P	11.642074	P	0.846361554243031	0	lncRNA	53858-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00029068 range=chr9:132250802-132272182 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029068 range=chr9:132250802-132272182 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132253802	132256801	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70"	NA	inter
CUST_9876_PI429285431	3.3395796	P	3.195523	P	1.10500783576106	0	lncRNA	11399-1_{1..2597}	lnc-RP11-408E5.4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-408E5.4.1-1:1	chr13	 19761260	 19763856	+	lnc-RP11-408E5.4.1-1	lnc-RP11-408E5.4.1-1:1	XLOC_010289	linc-MPHOSPH8-3	TUBA3C	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60chr13:19751260-19755992"	NA	inter
CUST_39823_PI429285431	4.4334817	P	3.3433483	P	2.12893720976026	0	lncRNA	40732-1_{1..3000}	n406343|NR_004859|lncRNA|Homosapiens||RefGeneNoncode|NR_004859||1.9132300|-0.2484485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406343|NR_004859|lncRNA|Homosapiens||RefGeneNoncode|NR_004859||1.9132300|-0.2484485	chr15	 85174690	 85177689	+	NA	NA	NA	NA	WDR73	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.61;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00chr15:85185999-85195694"	NA	inter
CUST_11382_PI429285431	0.89830065	A	0.9115011	A	0.990891877841668	0	lncRNA	12947-1_{1..799}	lnc-ANKRD33B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD33B-1:1	chr5	 10526277	 10527075	+	lnc-ANKRD33B-1	lnc-ANKRD33B-1:1	XLOC_004294	linc-ANKRD33B-1	NA	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-17.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70"	NA	inter
CUST_38421_PI429285431	0.90832394	A	2.1166654	A	0.432765842736562	0	lncRNA	39450-2_{3001..6000}	n382508|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zqg.2||4.2931100|-0.3206019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n382508|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zqg.2||4.2931100|-0.3206019	chr15	 42870856	 42873855	+	NA	NA	NA	NA	STARD9	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_XPNPEP3:range=chr22:41253186-412567855'pad=0,hg19_refFlat_XPNPEP3:range=chr22:41253186-412567855'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-14.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.44chr15:42867857-42975295"	NA	inner
CUST_141_PI429201921	1.3368912	A	1.6376567	A	0.811821526171168	0	lncRNA	126-1_{1..3000}	TC01004181.hg.1	TCONS_00000153-XLOC_000053 // Rinn lincRNAs // linc-FBXO44 chr1:+:11669587-11673412 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:11669587-11673412	NA	Affy_HUMAN_HTA2.0	TCONS_00000153-XLOC_000053	linc-FBXO44	chr1	 11669587	 11673412	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43087_PI429285431	1.3936157	A	1.1815348	A	1.15835775998787	0	lncRNA	47340-1_{1..126}	ENST00000408647 ncrna:snRNA chromosome:GRCh37:11:10420739:10420864:-1 gene:ENSG00000221574 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408647 ncrna:snRNA chromosome:GRCh37:11:10420739:10420864:-1 gene:ENSG00000221574 gene_biotype:snRNA transcript_biotype:snRNA	chr11	 10420739	 10420864	-	ENSG00000221574	ENST00000408647	NA	NA	NA	NA	NA	inter
CUST_44148_PI429285431	1.3851459	A	1.5386727	A	0.899049964167554	0	lncRNA	48810-1_{1..1760}	"gi|239582770|ref|NR_027753.1| Homo sapiens hedgehog acyltransferase-like (HHATL), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239582770|ref|NR_027753.1| Homo sapiens hedgehog acyltransferase-like (HHATL), transcript variant 2, non-coding RNA"	Chr3	 42734155	 42735914	-	57467	NR_027753.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001986	0.907168	A	0.9265349	A	0.98666558942553	0	lncRNA	ENST00000427398	XR_109991	XR_109991	NA	NA	XLOC_001928	NA	ENST00000427398	THC2779523	NA	"PREDICTED: Homo sapiens hypothetical LOC727944, transcript variant 1 (LOC727944), miscRNA [XR_109991]"	chr2:491003-490944	hs|2p25.3	Agilent_HUMAN_G3V2	ENST00000427398	ENST00000427398	chr2	   490944	   491003	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41523_PI429285431	5.339534	P	5.4580936	P	0.921106833223779	0	lncRNA	42763-1_{1..79}	ENST00000362102 ncrna:miRNA chromosome:GRCh37:19:52196039:52196117:1 gene:ENSG00000198972 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362102 ncrna:miRNA chromosome:GRCh37:19:52196039:52196117:1 gene:ENSG00000198972 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 52196039	 52196117	+	ENSG00000198972	ENST00000362102	NA	NA	NA	NA	NA	inter
CUST_37716_PI429285431	0.91652966	A	1.1270196	A	0.864243683853473	0	lncRNA	38815-1_{1..343}	n346219|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1769|NULL|-1.5005900|-0.3316585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346219|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1769|NULL|-1.5005900|-0.3316585	chr7	 54910240	 54910582	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4250_PI429285431	1.2259068	A	0.9085797	A	1.24601989169527	0	lncRNA	4207-1_{1..530}	"transcript_id ""ENST00000546804.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546804.1"" | genecode_v17"	chr12	 48401764	 48402293	-	ENSG00000258203.1	ENST00000546804.1	RP1-228P16.3	RP1-228P16.3-001	COL2A1	NA	chr12:48391764-48398285	inter
LNCA_21_P0003567	4.846016	P	4.72121	P	1.09036110134638	0	lncRNA	TCONS_00007975	NA	NA	NA	NA	XLOC_003444	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003444), lincRNA [TCONS_00007975]"	chr4:8323735-8323794	hs|4p16.1	Agilent_HUMAN_G3V2	TCONS_00007975	TCONS_00007975	chr4	  8323735	  8323794	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003128	3.8487008	P	4.1912556	P	0.788643503318422	0	lncRNA	THC2742095	NA	NA	NA	NA	XLOC_003156	NA	NA	THC2742095	NA	"BROAD Institute lincRNA (XLOC_003156), lincRNA [TCONS_00006533]"	chr3:070654663-070654604	hs|3p13	Agilent_HUMAN_G3V2	THC2742095	THC2742095	chr3	 70654604	 70654663	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49943_PI429285431	0.90743005	A	0.91248035	A	0.996505518755156	0	lncRNA	53693-1_{1..420}	hg19_lincRNAsTranscripts_TCONS_l2_00026182 range=chr7:125101617-125106655 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026182 range=chr7:125101617-125106655 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	125101617	125102036	+	NA	NA	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10"	NA	inter
CUST_48823_PI429285431	4.419601	P	2.8805056	A	2.90612226373037	0	lncRNA	52661-1_{1..796}	hg19_lincRNAsTranscripts_TCONS_l2_00014350 range=chr2:243030856-243102147 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014350 range=chr2:243030856-243102147 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	243030856	243031651	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43663_PI429285431	0.89776105	A	0.89964014	A	0.998698361931136	0	lncRNA	48418-1_{1..1731}	"gi|224028224|ref|NR_026957.1| Homo sapiens uncharacterized LOC284688 (LOC284688), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224028224|ref|NR_026957.1| Homo sapiens uncharacterized LOC284688 (LOC284688), non-coding RNA"	Chr1	170240546	170242276	-	284688	NR_026957.1	NA	NA	NA	NA	NA	inter
CUST_39622_PI429285431	7.6419063	P	7.3199844	P	1.24999463255064	0	lncRNA	40561-1_{1..854}	n387724|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011mhk.1||2.1711400|-0.0735965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387724|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011mhk.1||2.1711400|-0.0735965	chrX	  3735570	  3736423	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34529_PI429285431	1.1572512	A	2.0775793	A	0.52838883958536	0	lncRNA	35991-2_{3001..3787}	n341408|BC040270|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3878|NULL|-0.8827460|-0.3101365	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341408|BC040270|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3878|NULL|-0.8827460|-0.3101365	chr8	  9910994	  9911780	-	NA	NA	NA	NA	MSRA	"hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50chr8:9911830-9921764"	NA	inter
LNCA_21_P0011804	1.7574549	A	0.909238	A	1.80027449903347	0	lncRNA	XR_109941	XR_109941	XR_109941	NA	Hs.442789	LOC100507006	uncharacterized LOC100507006	NA	THC2786309	NA	"PREDICTED: Homo sapiens hypothetical LOC100507006 (LOC100507006), miscRNA [XR_109941]"	chr2:64479052-64479111	hs|2p14	Agilent_HUMAN_G3V2	XR_109941	XR_109941	chr2	 64479052	 64479111	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013517	2.4539819	A	5.757147	P	0.101309045656954	0	lncRNA	TCONS_l2_00028240	NA	NA	NA	NA	XLOC_l2_014549	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014549), lincRNA [TCONS_l2_00028240]"	chr8:74189523-74189464	hs|8q21.11	Agilent_HUMAN_G3V2	TCONS_l2_00028240	TCONS_l2_00028240	chr8	 74189464	 74189523	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8980_PI429285431	0.8995837	A	0.89871734	A	1.00060069533658	0	lncRNA	10511-1_{1..636}	lnc-TYRP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TYRP1-3:1	chr9	 10617861	 10618496	+	lnc-TYRP1-3	lnc-TYRP1-3:1	ENSG00000226717	XLOC_007280	PTPRD	NA	chr9:10607861-10612723	inter
CUST_31664_PI429285431	9.438503	P	9.358026	P	1.05736758149136	0	lncRNA	33414-1_{1..2219}	n338188|BC033837|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|579|NULL|-0.9196840|-0.1770237	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338188|BC033837|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|579|NULL|-0.9196840|-0.1770237	chr22	 49808172	 49810390	-	NA	NA	NA	NA	NA	"hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50"	NA	inter
CUST_3507_PI429285431	0.89845526	A	0.90908813	A	0.992656949048104	0	lncRNA	3478-1_{1..456}	"transcript_id ""ENST00000445897.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445897.2"" | genecode_v17"	chr9	108823635	108824090	-	ENSG00000225002.2	ENST00000445897.2	RP11-6F6.1	RP11-6F6.1-001	NA	NA	NA	inter
CUST_40200_PI429285431	0.89062244	A	1.4565113	A	0.675539081347128	0	lncRNA	41031-1_{1..1357}	n408025|NR_027786|lncRNA|Homosapiens||RefGeneNoncode|NR_027786||3.5543100|-0.1630030	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n408025|NR_027786|lncRNA|Homosapiens||RefGeneNoncode|NR_027786||3.5543100|-0.1630030	chr22	 42896584	 42897940	+	NA	NA	NA	NA	RRP7A	NA	chr22:42904341-42915829	inner
CUST_17467_PI429285431	0.90043956	A	0.9540067	A	0.963550950327236	0	lncRNA	19193-1_{1..241}	lnc-FSIP1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FSIP1-6:1	chr15	 39602818	 39603058	-	lnc-FSIP1-6	lnc-FSIP1-6:1	XLOC_011436	linc-RASGRP1-4	NA	NA	NA	inter
CUST_2770_PI429285431	1.9305508	A	2.2301567	A	0.812474309086399	0	lncRNA	2753-1_{1..328}	"transcript_id ""ENST00000425322.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425322.1"" | genecode_v17"	chr7	 15880922	 15881249	-	ENSG00000229379.1	ENST00000425322.1	AC006041.1	AC006041.1-001	NA	NA	NA	inter
LNCA_21_P0003392	3.6669161	P	3.8137946	P	0.90320257230535	0	lncRNA	ENST00000442020	NA	NA	NA	NA	XLOC_003660	NA	ENST00000442020	THC2663053	NA	"BROAD Institute lincRNA (XLOC_003660), lincRNA [TCONS_00008206]"	chr4:118791011-118791070	hs|4q26	Agilent_HUMAN_G3V2	ENST00000442020	ENST00000442020	chr4	118791011	118791070	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16170_PI429285431	5.1321754	P	5.3589087	P	0.854567703685145	0	lncRNA	17876-1_{1..1222}	lnc-MGAT1-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MGAT1-2:11	chr5	180257608	180258829	-	lnc-MGAT1-2	lnc-MGAT1-2:11	XLOC_005110	linc-MGAT1-2	NA	NA	NA	inter
CUST_20957_PI429285431	5.3653536	P	5.5840807	P	0.859323289052077	0	lncRNA	22588-1_{1..594}	lnc-FAM109B-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM109B-1:6	chr22	 42520880	 42521473	+	lnc-FAM109B-1	lnc-FAM109B-1:6	ENSG00000237037.3	RP4-669P10.18	CYP2D6	NA	chr22:42522501-42526883	inter
CUST_43746_PI429285431	0.91089076	A	0.89852476	A	1.00860829816387	0	lncRNA	48488-1_{1..3000}	"gi|257153363|ref|NR_028393.1| Homo sapiens TSNAX-DISC1 readthrough (TSNAX-DISC1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|257153363|ref|NR_028393.1| Homo sapiens TSNAX-DISC1 readthrough (TSNAX-DISC1), transcript variant 1, non-coding RNA"	Chr1	231664399	231667398	+	100303453	NR_028393.1	NA	NA	NA	NA	NA	inter
CUST_29197_PI429285431	0.8819571	A	0.8811667	A	1.00054801363615	0	lncRNA	30944-1_{1..507}	n326714|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000004979|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000004979|-0.2811070|-0.2043062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326714|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000004979|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000004979|-0.2811070|-0.2043062	chr1	  6707283	  6707789	+	NA	NA	NA	NA	DNAJC11	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50chr1:6697283-6722659"	NA	inner
CUST_49199_PI429285431	0.90567327	A	0.90886045	A	0.997793253621877	0	lncRNA	53022-1_{1..2468}	hg19_lincRNAsTranscripts_TCONS_l2_00020845 range=chr4:156902237-156938403 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020845 range=chr4:156902237-156938403 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	156902237	156904704	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8906_PI429285431	5.15055	P	5.248156	P	0.934582546517391	0	lncRNA	10442-1_{1..3000}	lnc-C1QL4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1QL4-1:1	chr12	 49718275	 49721274	-	lnc-C1QL4-1	lnc-C1QL4-1:1	ENSG00000246003	ENSG00000258334.1	TROAP	"hg19_refFlat_KRT80:range=chr12:52565182-525856865'pad=0,hg19_refFlat_KRT80:range=chr12:52565182-525856865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_KRT7:range=chr12:52627081-526425445'pad=0,hg19_refFlat_KRT7:range=chr12:52627081-526425445'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.50;hg19_refFlat_PRPH:range=chr12:49688984-496921365'pad=0,hg19_refFlat_PRPH:range=chr12:49688984-496921365'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.00;hg19_refFlat_KRT80:range=chr12:52565307-525856865'pad=0,hg19_refFlat_KRT80:range=chr12:52565307-525856865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_KRT6A:range=chr12:52881504-528869725'pad=0,hg19_refFlat_KRT6A:range=chr12:52881504-528869725'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_TROAP:range=chr12:49717392-497180355'pad=0,hg19_refFlat_TROAP:range=chr12:49717392-497180355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_KRT8:range=chr12:53291212-532987655'pad=0,hg19_refFlat_KRT8:range=chr12:53291212-532987655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_KRT6C:range=chr12:52862846-528675215'pad=0,hg19_refFlat_KRT6C:range=chr12:52862846-528675215'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_KRT84:range=chr12:52771818-527793695'pad=0,hg19_refFlat_KRT84:range=chr12:52771818-527793695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_KRT6B:range=chr12:52840974-528458625'pad=0,hg19_refFlat_KRT6B:range=chr12:52840974-528458625'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_KRT3:range=chr12:53183826-531898265'pad=0,hg19_refFlat_KRT3:range=chr12:53183826-531898265'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_KRT8:range=chr12:53291212-533202335'pad=0,hg19_refFlat_KRT8:range=chr12:53291212-533202335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90chr12:49716971-49725514"	NA	inner
CUST_14435_PI429285431	1.0603592	A	0.9266696	A	1.09709586884358	0	lncRNA	16096-1_{1..1132}	lnc-LTN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LTN1-1:1	chr21	 30294148	 30295279	-	lnc-LTN1-1	lnc-LTN1-1:1	XLOC_014046	linc-N6AMT1	LTN1	NA	chr21:30300466-30305198	inter
CUST_26071_PI429285431	2.0325544	A	3.224713	A	0.437647550231833	0	lncRNA	27584-1_{1..512}	lnc-NUP88-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUP88-1:1	chr17	  5274541	  5275052	-	lnc-NUP88-1	lnc-NUP88-1:1	ENSG00000263220.1	RP11-420A6.2	RABEP1	NA	chr17:5264541-5284921	inner
CUST_47389_PI429285431	0.8803145	A	2.5308342	A	0.318525394207117	0	lncRNA	51437-1_{1..471}	"gi|223556005|ref|NR_026842.1| Homo sapiens Down syndrome critical region gene 8 (DSCR8), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223556005|ref|NR_026842.1| Homo sapiens Down syndrome critical region gene 8 (DSCR8), transcript variant 2, non-coding RNA"	Chr21	 39493545	 39494015	+	84677	NR_026842.1	NA	NA	NA	NA	NA	inter
CUST_28888_PI429285431	1.0429021	A	0.9156632	A	1.09220139152554	0	lncRNA	30604-1_{1..259}	n326311|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000085141|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000085141|-1.1448300|-0.2050096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326311|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000085141|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000085141|-1.1448300|-0.2050096	chr1	179472146	179472404	+	NA	NA	NA	NA	AXDND1	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-31.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr1:179462146-179484363"	NA	inner
LNCA_21_P0011691	0.8828021	A	1.00159	A	0.920961083743589	0	lncRNA	TCONS_l2_00012515	NA	NA	NA	NA	XLOC_l2_006718	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006718), lincRNA [TCONS_l2_00012515]"	chr19:37746848-37747651	hs|19q13.12	Agilent_HUMAN_G3V2	TCONS_l2_00012515	TCONS_l2_00012515	chr19	 37746848	 37747651	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33577_PI429285431	4.9231963	P	5.249822	P	0.7973993309669	0	lncRNA	35142-1_{1..446}	n340329|AF009274|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2790|NULL|-0.9839940|-0.1536979	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340329|AF009274|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2790|NULL|-0.9839940|-0.1536979	chr5	  9151946	  9152391	+	NA	NA	NA	NA	SEMA5A	NA	chr5:9141946-9162392	inner
CUST_49435_PI429285431	3.7593818	P	3.8576417	P	0.934159043950855	0	lncRNA	53237-1_{1..265}	hg19_lincRNAsTranscripts_TCONS_l2_00022668 range=chr5:177384572-177386892 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022668 range=chr5:177384572-177386892 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	177384572	177384836	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20"	NA	inter
CUST_26030_PI429285431	1.1671965	A	1.1798644	A	0.991257718759452	0	lncRNA	27549-1_{1..3000}	lnc-LMO7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LMO7-2:1	chr13	 76378425	 76381424	+	lnc-LMO7-2	lnc-LMO7-2:1	ENSG00000261553.1	RP11-29G8.3	LMO7	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70chr13:76368425-76391256"	NA	inner
CUST_40003_PI429285431	9.872658	P	10.006943	P	0.911121273632349	0	lncRNA	40867-1_{1..2943}	n407142|NR_026554|lncRNA|Homosapiens||RefGeneNoncode|NR_026554||11.0506000|-0.1948852	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407142|NR_026554|lncRNA|Homosapiens||RefGeneNoncode|NR_026554||11.0506000|-0.1948852	chr12	 54104901	 54107843	-	NA	NA	NA	NA	CALCOCO1	NA	chr12:54104902-54121307	inner
CUST_23950_PI429285431	6.4282303	P	6.4527245	P	0.983165229806055	0	lncRNA	25506-1_{1..612}	lnc-FANCI-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FANCI-1:2	chr15	 89878880	 89879491	+	lnc-FANCI-1	lnc-FANCI-1:2	ENSG00000261441.1	RP11-217B1.2	POLG	NA	chr15:89868880-89878026	inter
CUST_24921_PI429285431	2.0021667	A	2.5119834	A	0.702311663621205	0	lncRNA	26462-1_{1..592}	lnc-HYI-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HYI-2:1	chr1	 44173779	 44174370	-	lnc-HYI-2	lnc-HYI-2:1	ENSG00000236200.1	RP11-184I16.2	ST3GAL3	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.61;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40chr1:44173218-44183809"	NA	inter
CUST_50598_PI429285431	7.5693536	P	7.536998	P	1.02268057306275	0	lncRNA	54286-2_{3001..3604}	hg19_lincRNAsTranscripts_TCONS_l2_00003644 range=chr10:81525581-81588826 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003644 range=chr10:81525581-81588826 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 81528581	 81529184	-	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30"	NA	inter
CUST_29218_PI429285431	7.2211685	P	7.0201044	P	1.14954592206944	0	lncRNA	30967-1_{1..1944}	n326741|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007025|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007025|-1.2605800|-0.3398288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326741|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007025|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007025|-1.2605800|-0.3398288	chr1	   742613	   744556	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013205	5.6520233	P	5.6401396	P	1.00827117183719	0	lncRNA	TCONS_l2_00025910	NA	NA	NA	NA	XLOC_l2_013427	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013427), lincRNA [TCONS_l2_00025910]"	chr7:62841186-62841245	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025910	TCONS_l2_00025910	chr7	 62841186	 62841245	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20337_PI429285431	0.88167375	A	0.8825754	A	0.999375219101566	0	lncRNA	21979-1_{1..496}	lnc-M6PR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-M6PR-1:1	chr12	  9149093	  9149588	-	lnc-M6PR-1	lnc-M6PR-1:1	ENSG00000257105.1	RP11-259O18.4	KLRG1	NA	chr12:9142221-9159162	inner
LNCA_21_P0007511	0.8875034	A	0.8877857	A	0.99980434369412	0	lncRNA	TCONS_00020269	NA	NA	NA	NA	XLOC_009614	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009614), lincRNA [TCONS_00020269]"	chr12:837344-837403	hs|12p13.33	Agilent_HUMAN_G3V2	TCONS_00020269	TCONS_00020269	chr12	   837344	   837403	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37338_PI429285431	6.8657274	P	6.11769	P	1.67950652435487	0	lncRNA	38442-1_{1..729}	n345780|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1329|NULL|-1.3476600|-0.4841303	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345780|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1329|NULL|-1.3476600|-0.4841303	chr7	 74607897	 74608625	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26858_PI429285431	2.4634159	A	2.5648065	A	0.93213408322291	0	lncRNA	28372-1_{1..428}	n323930|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055574|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055574|-1.4795500|-0.1809586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323930|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055574|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055574|-1.4795500|-0.1809586	chrX	   201724	   202151	+	NA	NA	NA	NA	PLCXD1	NA	chrX:192991-212586	inner
CUST_39566_PI429285431	1.0881257	A	1.5721893	A	0.714960974031641	0	lncRNA	40510-1_{1..2513}	n387526|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011gqu.1||-1.2268600|-0.3193664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387526|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011gqu.1||-1.2268600|-0.3193664	chr6	  1188312	  1190824	+	NA	NA	NA	NA	NA	"hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.39;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_7063_PI429285431	2.8145788	A	3.678941	P	0.549289188081237	0	lncRNA	7008-1_{1..443}	"transcript_id ""ENST00000604369.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604369.1"" | genecode_v17"	chrX	 53123330	 53123772	+	ENSG00000232593.2	ENST00000604369.1	RP11-258C19.5	RP11-258C19.5-005	TSPYL2	NA	chrX:53113330-53117728	inter
CUST_31047_PI429285431	7.0591054	P	7.1874948	P	0.914852205658235	0	lncRNA	32837-1_{1..425}	n337269|BC127882|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389501|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389501|-1.0907200|-0.0889173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337269|BC127882|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389501|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389501|-1.0907200|-0.0889173	chr14	105349754	105350178	-	NA	NA	NA	NA	KIAA0284	"hg19_refFlat_CEP170B:range=chr14:105334788-1053612955'pad=0,hg19_refFlat_CEP170B:range=chr14:105334788-1053612955'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.70;hg19_refFlat_CEP170B:range=chr14:105344237-1053612955'pad=0,hg19_refFlat_CEP170B:range=chr14:105344237-1053612955'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.70chr14:105339754-105360502"	NA	inner
CUST_45072_PI429285431	5.5038967	P	5.6383247	P	0.911030967724685	0	lncRNA	49557-1_{1..3000}	"gi|380692324|ref|NR_046443.1| Homo sapiens centrosomal protein 41kDa (CEP41), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|380692324|ref|NR_046443.1| Homo sapiens centrosomal protein 41kDa (CEP41), transcript variant 5, non-coding RNA"	NW_003871065.1	    49189	    52188	-	95681	NR_046443.1	NA	NA	NA	NA	NA	Unknown
CUST_22729_PI429285431	1.1914123	A	1.5415566	A	0.784505626826749	0	lncRNA	24313-1_{1..1683}	lnc-CTTN-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-CTTN-4:1	chr11	 70709893	 70711575	+	lnc-CTTN-4	lnc-CTTN-4:1	ENSG00000171671.6	SHANK2-AS3	SHANK2	"hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-23.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80chr11:70699893-70721220"	NA	inner
CUST_16606_PI429285431	1.9316392	A	1.6966274	A	1.17691636333926	0	lncRNA	18306-1_{1..923}	lnc-ZNF507-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF507-2:2	chr19	 32595388	 32596310	+	lnc-ZNF507-2	lnc-ZNF507-2:2	XLOC_013040	linc-ZNF507-2	NA	NA	NA	inter
CUST_42667_PI429285431	1.7536094	A	2.944727	A	0.437963455877856	0	lncRNA	45574-1_{1..81}	ENST00000364027 ncrna:snoRNA chromosome:GRCh37:12:107768524:107768604:1 gene:ENSG00000200897 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364027 ncrna:snoRNA chromosome:GRCh37:12:107768524:107768604:1 gene:ENSG00000200897 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	107768524	107768604	+	ENSG00000200897	ENST00000364027	NA	NA	BTBD11	NA	chr12:107758524-107778604	inner
CUST_47567_PI429285431	4.0579476	P	4.0764923	P	0.987228055943158	0	lncRNA	51572-1_{1..348}	"gi|189181650|ref|NR_023358.1| Homo sapiens small Cajal body-specific RNA 9-like (SCARNA9L), guide RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ensembl.GRCh37.72,ncbi,"	">gi|189181650|ref|NR_023358.1| Homo sapiens small Cajal body-specific RNA 9-like (SCARNA9L), guide RNA"	ChrX	 20154184	 20154531	-	100158262	NR_023358.1	NA	NA	NA	NA	NA	inter
CUST_37172_PI429285431	0.87640315	A	0.88037497	A	0.997250730348202	0	lncRNA	38287-1_{1..1809}	n345606|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1155|NULL|-1.3151000|-0.2899294	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345606|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1155|NULL|-1.3151000|-0.2899294	chr3	170409723	170411531	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18119_PI429285431	0.9830565	A	1.691053	A	0.612169681331211	0	lncRNA	19853-2_{3001..3820}	lnc-C15orf2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-6:1	chr15	 24641619	 24642438	+	lnc-C15orf2-6	lnc-C15orf2-6:1	XLOC_011178	linc-C15orf2-4	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50"	NA	inter
CUST_20059_PI429285431	1.9573629	A	2.4152653	A	0.72804402585996	0	lncRNA	21710-1_{1..437}	lnc-RP11-664D7.4.1-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-664D7.4.1-3:8	chr8	 69871541	 69871977	-	lnc-RP11-664D7.4.1-3	lnc-RP11-664D7.4.1-3:8	ENSG00000253658.1	RP11-600K15.1	NA	NA	NA	inter
CUST_1186_PI429285431	0.8864685	A	0.89875984	A	0.991516482194451	0	lncRNA	1176-1_{1..473}	"transcript_id ""ENST00000441026.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441026.1"" | genecode_v17"	chr2	184769256	184769728	+	ENSG00000234172.1	ENST00000441026.1	AC093639.1	AC093639.1-001	NA	NA	NA	inter
CUST_15517_PI429285431	4.1118913	P	2.1854956	A	3.8010439325566	0	lncRNA	17202-5_{12001..13416}	lnc-NAP1L2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NAP1L2-1:4	chrX	 73073217	 73074632	-	lnc-NAP1L2-1	lnc-NAP1L2-1:4	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_15510_PI429285431	1.2410572	A	0.9936558	A	1.18706702851707	0	lncRNA	17199-1_{1..909}	lnc-SAMD12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SAMD12-2:1	chr8	119740209	119741117	-	lnc-SAMD12-2	lnc-SAMD12-2:1	XLOC_007193	linc-SAMD12-1	NA	NA	NA	inter
CUST_22418_PI429285431	3.120008	A	3.2372844	A	0.921926472896569	0	lncRNA	24007-1_{1..672}	lnc-MANSC4-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MANSC4-3:3	chr12	 27857256	 27857927	-	lnc-MANSC4-3	lnc-MANSC4-3:3	ENSG00000256377.1	RP11-1060J15.4	PPFIBP1	"hg19_refFlat_REP15:range=chr12:27849496-278502065'pad=0,hg19_refFlat_REP15:range=chr12:27849496-278502065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30chr12:27847256-27848497"	NA	inter
CUST_29505_PI429285431	4.5846786	P	4.372164	P	1.15870603544874	0	lncRNA	31263-1_{1..291}	n332937|AF086560|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067439|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067439|-1.0512900|-0.1666787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332937|AF086560|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067439|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067439|-1.0512900|-0.1666787	chr11	 71713290	 71713580	+	NA	NA	NA	NA	RNF121	NA	chr11:71703290-71708643	inner
CUST_42318_PI429285431	6.832061	P	7.35827	P	0.694376967759447	0	lncRNA	44950-1_{1..95}	ENST00000390861 ncrna:snoRNA chromosome:GRCh37:17:2233570:2233664:-1 gene:ENSG00000212163 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390861 ncrna:snoRNA chromosome:GRCh37:17:2233570:2233664:-1 gene:ENSG00000212163 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	  2233570	  2233664	-	ENSG00000212163	ENST00000390861	NA	NA	TSR1	NA	chr17:2225972-2240678	inner
CUST_11633_PI429285431	1.5625092	A	1.3630413	A	1.14827476603707	0	lncRNA	13210-1_{1..2068}	lnc-SUCLG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUCLG1-1:1	chr2	 84704945	 84707012	-	lnc-SUCLG1-1	lnc-SUCLG1-1:1	XLOC_002186	linc-SUCLG1	NA	NA	NA	inter
CUST_19202_PI429285431	4.411522	P	5.124155	P	0.610205462519956	0	lncRNA	20872-1_{1..338}	lnc-PDSS2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDSS2-1:2	chr6	107832585	107832922	-	lnc-PDSS2-1	lnc-PDSS2-1:2	ENSG00000234206.1	RP1-67A8.3	SOBP	NA	chr6:107822585-107842640	inner
LNCA_21_P0004122	1.8924141	A	2.4498262	A	0.679519991092973	0	lncRNA	ENST00000513673	NA	NA	NA	NA	XLOC_004788	NA	ENST00000513673	NA	NA	"BROAD Institute lincRNA (XLOC_004788), lincRNA [TCONS_00009640]"	chr5:37920967-37920175	hs|5p13.2	Agilent_HUMAN_G3V2	ENST00000513673	ENST00000513673	chr5	 37920175	 37920967	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27522_PI429285431	3.2582648	P	2.6629784	A	1.51077247034674	0	lncRNA	29098-1_{1..917}	n324707|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319542|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319542|-0.1252130|-0.2627003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324707|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319542|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319542|-0.1252130|-0.2627003	chr22	 22105750	 22106666	+	NA	NA	NA	NA	MAPK1	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00chr22:22113946-22117258"	NA	inter
CUST_15786_PI429285431	0.90855896	A	0.9285196	A	0.986259611530312	0	lncRNA	17476-1_{1..1224}	lnc-CLDN24-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLDN24-2:2	chr4	184271930	184273153	-	lnc-CLDN24-2	lnc-CLDN24-2:2	XLOC_004198	linc-CLDN24-1	NA	NA	NA	inter
CUST_24170_PI429285431	4.729196	P	4.7943344	P	0.95585361665737	0	lncRNA	25721-1_{1..299}	lnc-TMED5-1:20	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMED5-1:20	chr1	 93802934	 93803232	-	lnc-TMED5-1	lnc-TMED5-1:20	ENSG00000223745.1	RP4-717I23.3	DR1	"hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0,hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10chr1:93811478-93813026"	NA	inter
CUST_49269_PI429285431	13.007906	P	12.603928	P	1.3231512627058	0	lncRNA	53089-1_{1..780}	hg19_lincRNAsTranscripts_TCONS_l2_00022611 range=chr5:168017702-168044050 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022611 range=chr5:168017702-168044050 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	168017702	168018481	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_317_PI429201921	0.884452	A	1.3227961	A	0.737981164525831	0	lncRNA	214-1_{1..3000}	TC02004868.hg.1	TCONS_l2_00016116-XLOC_l2_008483 // Broad TUCP // linc-IQCA1-1 chr2:-:237957241-237964810 // chr2 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr2:-:237957241-237964810	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00016116-XLOC_l2_008483	linc-IQCA1-1	chr2	237957241	237964810	-	NA	NA	NA	NA	CYP4Z1	NA	chr1:47552325-47583992	Unknown
CUST_25070_PI429285431	1.3317446	A	2.171773	A	0.55863257203345	0	lncRNA	26607-1_{1..926}	lnc-GGCT-1:20	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GGCT-1:20	chr7	 30603347	 30604272	-	lnc-GGCT-1	lnc-GGCT-1:20	ENSG00000196295.5	AC005154.6	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.27;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20"	NA	inter
CUST_44606_PI429285431	0.8952589	A	1.0730046	A	0.884083352340429	0	lncRNA	49181-1_{1..3000}	"gi|310119628|ref|XR_110309.1| PREDICTED: Homo sapiens uncharacterized LOC100505636, transcript variant 1 (LOC100505636), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310119628|ref|XR_110309.1| PREDICTED: Homo sapiens uncharacterized LOC100505636, transcript variant 1 (LOC100505636), misc_RNA"	NA	NA	NA	NA	NA	XR_110309.1	NA	NA	NA	NA	NA	Unknown
CUST_40542_PI429285431	1.120093	A	1.0244398	A	1.06854909882535	0	lncRNA	41300-1_{1..818}	n409666|NR_034066|lncRNA|Homosapiens||RefGeneNoncode|NR_034066||2.7792000|-0.1610972	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409666|NR_034066|lncRNA|Homosapiens||RefGeneNoncode|NR_034066||2.7792000|-0.1610972	chr11	104757417	104758234	-	NA	NA	NA	NA	CASP12	NA	chr11:104756445-104769397	inter
CUST_48235_PI429285431	3.921822	P	4.1192236	P	0.872119901785573	0	lncRNA	52097-1_{1..474}	hg19_lincRNAsTranscripts_TCONS_l2_00001664 range=chr1:182159283-182213533 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001664 range=chr1:182159283-182213533 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	182159283	182159756	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42028_PI429285431	0.89949536	A	0.90032995	A	0.999421673589799	0	lncRNA	43901-1_{1..95}	ENST00000384975 ncrna:miRNA chromosome:GRCh37:12:7073260:7073354:1 gene:ENSG00000207708 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384975 ncrna:miRNA chromosome:GRCh37:12:7073260:7073354:1 gene:ENSG00000207708 gene_biotype:miRNA transcript_biotype:miRNA	chr12	  7073260	  7073354	+	ENSG00000207708	ENST00000384975	NA	NA	PHB2	NA	chr12:7074515-7079916	inter
LNCA_21_P0002228	4.571855	P	4.9930267	P	0.746817841958108	0	lncRNA	TCONS_00003713	NA	NA	NA	NA	XLOC_001500	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001500), lincRNA [TCONS_00003713]"	chr2:65265474-65265533	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00003713	TCONS_00003713	chr2	 65265474	 65265533	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41986_PI429285431	8.68774	P	8.855028	P	0.890515112546298	0	lncRNA	43814-1_{1..70}	ENST00000581337 ncrna:miRNA chromosome:GRCh37:17:36858515:36858584:-1 gene:ENSG00000265930 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581337 ncrna:miRNA chromosome:GRCh37:17:36858515:36858584:-1 gene:ENSG00000265930 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 36858515	 36858584	-	ENSG00000265930	ENST00000581337	NA	NA	MLLT6	NA	chr17:36861873-36868584	inter
CUST_39624_PI429285431	1.1536727	A	0.8961805	A	1.19539896602506	0	lncRNA	40563-1_{1..954}	n387741|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011moa.1||3.6334100|-0.2412709	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n387741|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011moa.1||3.6334100|-0.2412709	chrX	 52651984	 52652937	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42323_PI429285431	0.91010237	A	0.909426	A	1.00046893387364	0	lncRNA	44961-1_{1..72}	ENST00000364394 ncrna:snoRNA chromosome:GRCh37:4:152023209:152023280:1 gene:ENSG00000201264 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364394 ncrna:snoRNA chromosome:GRCh37:4:152023209:152023280:1 gene:ENSG00000201264 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	152023209	152023280	+	ENSG00000201264	ENST00000364394	NA	NA	RPS3A	NA	chr4:152020754-152025804	inner
CUST_9685_PI429285431	4.281706	P	4.1076455	P	1.12822944922272	0	lncRNA	11202-1_{1..473}	lnc-HTR1B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HTR1B-2:1	chr6	 77860918	 77861390	-	lnc-HTR1B-2	lnc-HTR1B-2:1	XLOC_005768	linc-IMPG1-1	NA	NA	NA	inter
CUST_46848_PI429285431	6.5049253	P	5.5436482	P	1.94703268108161	0	lncRNA	50982-3_{6001..7054}	"gi|302191659|ref|NR_036474.1| Homo sapiens G patch domain containing 8 (GPATCH8), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302191659|ref|NR_036474.1| Homo sapiens G patch domain containing 8 (GPATCH8), transcript variant 2, non-coding RNA"	Chr17	 42478645	 42479698	-	23131	NR_036474.1	NA	NA	NA	NA	NA	inter
CUST_24002_PI429285431	0.91361237	A	0.92501444	A	0.992127836388283	0	lncRNA	25556-1_{1..550}	lnc-CYB5R2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYB5R2-1:1	chr11	  7592924	  7593473	-	lnc-CYB5R2-1	lnc-CYB5R2-1:1	ENSG00000254864.1	CTD-2516F10.4	PPFIBP2	NA	chr11:7582924-7603277	inner
CUST_310_PI429201921	3.1144059	P	3.4126635	P	0.813233978407483	0	lncRNA	211-1_{1..3000}	TC13001299.hg.1	TCONS_l2_00007472-XLOC_l2_003860 // Broad TUCP // linc-ARHGEF7-1 chr13:+:111748184-111755444 // chr13 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00007012-XLOC_l2_003860 // Broad TUCP // linc-ARHGEF7-1 chr13:+:111748953-111755103 // chr13 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr13:+:111748184-111755444	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00007472-XLOC_l2_003860	linc-ARHGEF7-1	chr13	111748184	111755444	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6786_PI429285431	1.4430771	A	1.8238864	A	0.768006645692849	0	lncRNA	6734-1_{1..516}	"transcript_id ""ENST00000416641.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416641.1"" | genecode_v17"	chr21	 19031594	 19032109	-	ENSG00000226956.1	ENST00000416641.1	AP000432.2	AP000432.2-001	NA	NA	NA	inter
CUST_22257_PI429285431	0.9141977	A	0.91221046	A	1.00137839892281	0	lncRNA	23858-1_{1..490}	lnc-CASC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CASC1-1:1	chr12	 25253814	 25254303	-	lnc-CASC1-1	lnc-CASC1-1:1	ENSG00000258449.1	RP11-713N11.4	CASC1	"hg19_refFlat_LRMP:range=chr12:25222342-252609945'pad=0,hg19_refFlat_LRMP:range=chr12:25222342-252609945'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20chr12:25261223-25263914"	NA	inner
CUST_23471_PI429285431	1.1668116	A	1.687484	A	0.697046883306583	0	lncRNA	25038-1_{1..555}	lnc-MON2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MON2-1:1	chr12	 63007385	 63007939	+	lnc-MON2-1	lnc-MON2-1:1	ENSG00000257354.1	RP11-631N16.2	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80"	NA	inter
CUST_30389_PI429285431	8.528687	P	7.2531633	P	2.42086679645926	0	lncRNA	32169-1_{1..210}	n335506|BC056681|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259577|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259577|-0.8943760|-0.2418640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335506|BC056681|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259577|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259577|-0.8943760|-0.2418640	chr20	 39657699	 39657908	+	NA	NA	NA	NA	TOP1	NA	chr20:39657462-39700130	inner
LNCA_21_P0003715	10.772492	P	10.542735	P	1.17263741968885	0	lncRNA	TCONS_00008414	NA	NA	NA	NA	XLOC_003865	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003865), lincRNA [TCONS_00008414]"	chr4:4923889-4923830	hs|4p16.2	Agilent_HUMAN_G3V2	TCONS_00008414	TCONS_00008414	chr4	  4923830	  4923889	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27348_PI429285431	1.6545105	A	2.49561	A	0.558217980405329	0	lncRNA	28910-1_{1..761}	n324508|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040805|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040805|1.1221100|-0.2628160	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324508|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040805|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040805|1.1221100|-0.2628160	chr6	 46833991	 46834751	-	NA	NA	NA	NA	GPR116	NA	chr6:46823991-46846854	inner
CUST_24882_PI429285431	2.299147	A	2.384323	A	0.942669528967497	0	lncRNA	26423-1_{1..466}	lnc-HSPB7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSPB7-1:1	chr1	 16332888	 16333353	-	lnc-HSPB7-1	lnc-HSPB7-1:1	ENSG00000233078.1	RP11-5P18.5	HSPB7	"hg19_refFlat_C1orf64:range=chr1:16330799-163328415'pad=0,hg19_refFlat_C1orf64:range=chr1:16330799-163328415'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.70chr1:16340523-16343166"	NA	inner
CUST_52014_PI429285431	2.231949	A	0.9033293	A	2.51162260157212	0	lncRNA	55544-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017138 range=chr21:15274045-15282858 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017138 range=chr21:15274045-15282858 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 15274045	 15277044	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38407_PI429285431	0.8942717	A	0.90754485	A	0.990841946274393	0	lncRNA	39438-2_{3001..6000}	n382353|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yyb.3||-1.0510300|-0.2691256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n382353|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yyb.3||-1.0510300|-0.2691256	chr15	 25331542	 25334541	+	NA	NA	NA	NA	SNRPN	NA	chr15:25318542-25377621	inter
CUST_10713_PI429285431	8.099305	P	8.256251	P	0.896921730767246	0	lncRNA	12249-1_{1..402}	lnc-C2orf71-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2orf71-1:1	chr2	 29320161	 29320562	-	lnc-C2orf71-1	lnc-C2orf71-1:1	XLOC_002037	linc-C2orf71	NA	NA	NA	inter
CUST_4455_PI429285431	3.2549467	P	3.9564314	P	0.614939037557957	0	lncRNA	4405-1_{1..751}	"transcript_id ""ENST00000545293.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000545293.1"" | genecode_v17"	chr12	123198838	123199588	+	ENSG00000256249.1	ENST00000545293.1	RP11-324E6.6	RP11-324E6.6-002	HCAR3	"hg19_refFlat_HCAR2:range=chr12:123186739-1231878305'pad=0,hg19_refFlat_HCAR2:range=chr12:123186739-1231878305'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_HCAR3:range=chr12:123200121-1232012845'pad=0,hg19_refFlat_HCAR3:range=chr12:123200121-1232012845'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10chr12:123199303-123201439"	NA	inner
CUST_21370_PI429285431	1.4593326	A	1.1937261	A	1.20214131602788	0	lncRNA	22992-1_{1..411}	lnc-FAM110B-8:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM110B-8:7	chr8	 58131969	 58132379	+	lnc-FAM110B-8	lnc-FAM110B-8:7	ENSG00000253301.1	RP11-513O17.2	NA	NA	NA	inter
CUST_50570_PI429285431	0.8971094	A	0.90948385	A	0.991459365091407	0	lncRNA	54263-1_{1..294}	hg19_lincRNAsTranscripts_TCONS_l2_00030911 range=chrY:23479732-23480448 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030911 range=chrY:23479732-23480448 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrY	 23479732	 23480025	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49732_PI429285431	0.8961417	A	0.92214465	A	0.982137587001935	0	lncRNA	53505-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026508 range=chr7:35791468-35840234 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026508 range=chr7:35791468-35840234 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 35791468	 35794467	-	NA	NA	NA	NA	7-Sep	NA	chr7:35840627-35850234	inter
CUST_13472_PI429285431	8.382776	P	8.368742	P	1.00977509469011	0	lncRNA	15110-1_{1..329}	lnc-LRP1B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRP1B-4:1	chr2	143628353	143628681	-	lnc-LRP1B-4	lnc-LRP1B-4:1	XLOC_002342	linc-LRP1B-2	KYNU	NA	chr2:143618353-143638636	inter
CUST_38320_PI429285431	0.9160399	A	0.9205115	A	0.996905321487225	0	lncRNA	39367-1_{1..3000}	n382029|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vau.1||0.0679518|-0.3980982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382029|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vau.1||0.0679518|-0.3980982	chr13	 46626982	 46629981	+	NA	NA	NA	NA	CPB2	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.30chr13:46627322-46679211"	NA	inner
LNCA_21_P0002404	0.8820384	A	0.8830106	A	0.999326349315636	0	lncRNA	TCONS_00004149	NA	NA	NA	NA	XLOC_001991	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001991), lincRNA [TCONS_00004149]"	chr2:13022196-13022137	hs|2p24.3	Agilent_HUMAN_G3V2	TCONS_00004149	TCONS_00004149	chr2	 13022137	 13022196	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33729_PI429285431	0.87893236	A	0.87975407	A	0.999430596202168	0	lncRNA	35287-1_{1..1687}	n340507|BC043525|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2969|NULL|-0.7626270|-0.3115836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340507|BC043525|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2969|NULL|-0.7626270|-0.3115836	chr5	 75902432	 75904118	-	NA	NA	NA	NA	IQGAP2	NA	chr5:75892432-75914794	inner
LNCA_21_P0003242	10.503984	P	10.631935	P	0.915130249277757	0	lncRNA	TCONS_00006915	NA	NA	NA	NA	XLOC_002730	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002730), lincRNA [TCONS_00006915]"	chr3:96336291-96336350	hs|3q11.2	Agilent_HUMAN_G3V2	TCONS_00006915	TCONS_00006915	chr3	 96336291	 96336350	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14199_PI429285431	1.878861	A	2.1907072	A	0.805610169378112	0	lncRNA	15852-1_{1..1484}	lnc-MCM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MCM2-1:1	chr3	127259128	127260611	+	lnc-MCM2-1	lnc-MCM2-1:1	XLOC_002803	linc-MCM2-1	NA	"hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30"	NA	inter
CUST_21651_PI429285431	1.9329492	A	2.4920442	A	0.678727794934004	0	lncRNA	23263-1_{1..460}	lnc-MAP1LC3B-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP1LC3B-5:1	chr16	 87102964	 87103423	+	lnc-MAP1LC3B-5	lnc-MAP1LC3B-5:1	ENSG00000261363.1	RP11-134D3.2	NA	NA	NA	inter
CUST_44504_PI429285431	6.116662	P	6.240016	P	0.918050868754018	0	lncRNA	49103-1_{1..1665}	"gi|224282144|ref|NR_027027.1| Homo sapiens glucuronidase, beta pseudogene 1 (GUSBP1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224282144|ref|NR_027027.1| Homo sapiens glucuronidase, beta pseudogene 1 (GUSBP1), transcript variant 2, non-coding RNA"	Chr5	 21459589	 21461253	+	728411	NR_027027.1	NA	NA	NA	NA	NA	inter
CUST_51562_PI429285431	0.9012528	A	0.9142303	A	0.991045019294925	0	lncRNA	55127-1_{1..1691}	hg19_lincRNAsTranscripts_TCONS_l2_00010597 range=chr17:19321236-19327806 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010597 range=chr17:19321236-19327806 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 19321236	 19322926	+	NA	NA	NA	NA	RNF112	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40chr17:19314491-19320589"	NA	inter
CUST_52126_PI429285431	4.247053	P	2.3701596	A	3.67283325540318	0	lncRNA	55650-1_{1..431}	hg19_lincRNAsTranscripts_TCONS_l2_00018165 range=chr22:20345296-20350454 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018165 range=chr22:20345296-20350454 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 20345296	 20345726	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18226_PI429285431	3.8202958	P	4.3334384	P	0.700694462523228	0	lncRNA	19961-1_{1..380}	lnc-AGPAT5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AGPAT5-1:2	chr8	  6742644	  6743023	+	lnc-AGPAT5-1	lnc-AGPAT5-1:2	ENSG00000245857	GS1-24F4.2	DEFB1	NA	chr8:6732644-6735529	inter
CUST_20631_PI429285431	4.6202116	P	4.4138317	P	1.15378938851396	0	lncRNA	22270-1_{1..1234}	lnc-HIST2H3C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HIST2H3C-1:1	chr1	149802876	149804109	-	lnc-HIST2H3C-1	lnc-HIST2H3C-1:1	ENSG00000264207.1	RP11-196G18.23	HIST2H2AA3	NA	chr1:149813785-149814109	inter
CUST_45183_PI429285431	7.3909674	P	7.442635	P	0.964820455658413	0	lncRNA	49655-1_{1..3000}	"gi|338753359|ref|NR_040009.1| Homo sapiens inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta (IKBKB), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|338753359|ref|NR_040009.1| Homo sapiens inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta (IKBKB), transcript variant 8, non-coding RNA"	Chr8	 42128820	 42131819	+	3551	NR_040009.1	NA	NA	NA	NA	NA	inter
CUST_40779_PI429285431	1.0865176	A	0.97129893	A	1.08313920502909	0	lncRNA	41494-3_{6001..6909}	n410507|NR_037649|lncRNA|Homosapiens||RefGeneNoncode|NR_037649||6.5885300|-0.3371776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410507|NR_037649|lncRNA|Homosapiens||RefGeneNoncode|NR_037649||6.5885300|-0.3371776	chr2	135682391	135683299	+	NA	NA	NA	NA	YSK4	NA	chr2:135722273-135726915	inter
CUST_24068_PI429285431	0.88323516	A	0.8856933	A	0.998297597922716	0	lncRNA	25618-1_{1..430}	lnc-C14orf126-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C14orf126-1:1	chr14	 32027624	 32028053	-	lnc-C14orf126-1	lnc-C14orf126-1:1	ENSG00000258196.1	CTD-2213F21.4	NUBPL	NA	chr14:32030591-32037704	inter
CUST_31483_PI429285431	0.89463323	A	0.8971294	A	0.998271282758258	0	lncRNA	33248-1_{1..3000}	n337962|AK127075|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|347|NULL|8.7651000|-0.3408890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337962|AK127075|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|347|NULL|8.7651000|-0.3408890	chr1	 55559716	 55562715	-	NA	NA	NA	NA	USP24	NA	chr1:55549716-55623437	inner
CUST_52166_PI429285431	5.5265045	P	5.9139357	P	0.764489610264893	0	lncRNA	55686-1_{1..641}	hg19_lincRNAsTranscripts_TCONS_l2_00018192 range=chr22:23788785-23802975 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018192 range=chr22:23788785-23802975 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 23788785	 23789425	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41768_PI429285431	4.6952734	P	4.8479676	P	0.899568968544559	0	lncRNA	43331-1_{1..117}	ENST00000401127 ncrna:miRNA chromosome:GRCh37:20:62551365:62551481:1 gene:ENSG00000215946 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401127 ncrna:miRNA chromosome:GRCh37:20:62551365:62551481:1 gene:ENSG00000215946 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 62551365	 62551481	+	ENSG00000215946	ENST00000401127	NA	NA	DNAJC5	NA	chr20:62541365-62561481	inner
CUST_32871_PI429285431	0.9081658	A	0.8996929	A	1.00589024642647	0	lncRNA	34500-1_{1..1451}	n339537|CR594309|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1978|NULL|-1.0771000|-0.2143632	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339537|CR594309|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1978|NULL|-1.0771000|-0.2143632	chr3	128735052	128736502	+	NA	NA	NA	NA	CCDC48	NA	chr3:128725052-128747275	inner
CUST_22000_PI429285431	1.4554112	A	1.6143506	A	0.89568329222582	0	lncRNA	23609-1_{1..504}	lnc-NFKBIA-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NFKBIA-2:1	chr14	 35916410	 35916913	-	lnc-NFKBIA-2	lnc-NFKBIA-2:1	ENSG00000259017.1	RP11-561B11.6	NA	"hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0,hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50"	NA	inter
CUST_17459_PI429285431	0.9018287	A	0.89139587	A	1.00725769704153	0	lncRNA	19184-1_{1..722}	lnc-DRD5-10:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DRD5-10:8	chr4	 11773329	 11774050	+	lnc-DRD5-10	lnc-DRD5-10:8	XLOC_003457	linc-CPEB2-10	NA	NA	NA	inter
LNCA_19_P00318519	8.342218	P	8.446587	P	0.930211705807455	0	lncRNA	XR_110898	XR_110898	XR_110898	NA	NA	LOC100506259	NA	NA	THC2662402	NA	"PREDICTED: Homo sapiens hypothetical LOC100506259 (LOC100506259), miscRNA [XR_110898]"	chr11:82789879-82789820	hs|11q14.1	Agilent_HUMAN_G3V2	XR_110898	XR_110898	chr11	 82789820	 82789879	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44469_PI429285431	5.620681	P	5.527108	P	1.06700948439914	0	lncRNA	49073-1_{1..483}	"gi|299829283|ref|NR_033869.1| Homo sapiens uncharacterized LOC401164 (LOC401164), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299829283|ref|NR_033869.1| Homo sapiens uncharacterized LOC401164 (LOC401164), non-coding RNA"	Chr4	189376732	189377214	+	401164	NR_033869.1	NA	NA	NA	NA	NA	inter
CUST_4785_PI429285431	0.88502353	A	0.91570765	A	0.978955970646878	0	lncRNA	4729-1_{1..405}	"transcript_id ""ENST00000555555.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555555.1"" | genecode_v17"	chr14	 39954220	 39954624	+	ENSG00000258526.1	ENST00000555555.1	RP11-111A21.1	RP11-111A21.1-001	NA	NA	NA	inter
CUST_23428_PI429285431	1.6811366	A	1.6725143	A	1.00599441798043	0	lncRNA	24996-1_{1..578}	lnc-WDR34-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR34-2:1	chr9	131314647	131315224	-	lnc-WDR34-2	lnc-WDR34-2:1	ENSG00000228395.1	RP11-216B9.6	SPTAN1	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80chr9:131314837-131324689"	NA	inter
CUST_34493_PI429285431	2.7121022	A	2.771573	A	0.959616054886151	0	lncRNA	35960-1_{1..965}	n341370|BC009871|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3839|NULL|-1.0389800|-0.2073742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341370|BC009871|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3839|NULL|-1.0389800|-0.2073742	chr7	155014612	155015576	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008462	7.443617	P	7.724825	P	0.822901695191849	0	lncRNA	TCONS_00022796	NA	NA	NA	NA	XLOC_011074	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011074), lincRNA [TCONS_00022796]"	chr14:74674965-74674906	hs|14q24.3	Agilent_HUMAN_G3V2	TCONS_00022796	TCONS_00022796	chr14	 74674906	 74674965	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20601_PI429285431	4.488085	P	4.764285	P	0.825763181916274	0	lncRNA	22240-1_{1..588}	lnc-MRPS22-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPS22-1:6	chr3	139141858	139142445	+	lnc-MRPS22-1	lnc-MRPS22-1:6	ENSG00000248932.1	RP11-319G6.1	NA	NA	NA	inter
CUST_17628_PI429285431	7.2718496	P	7.4252224	P	0.899145938077782	0	lncRNA	19353-1_{1..354}	lnc-C8orf22-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C8orf22-4:3	chr8	 49536232	 49536585	+	lnc-C8orf22-4	lnc-C8orf22-4:3	XLOC_006790	linc-C8orf22-2	NA	NA	NA	inter
CUST_16613_PI429285431	0.8970911	A	0.8995286	A	0.998311880227174	0	lncRNA	18313-1_{1..726}	lnc-ZMYM3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZMYM3-1:1	chrX	 70417759	 70418484	-	lnc-ZMYM3-1	lnc-ZMYM3-1:1	XLOC_008180	linc-IL2RG	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.91;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40"	NA	inter
CUST_32349_PI429285431	0.8842943	A	0.89788646	A	0.990622874650788	0	lncRNA	34029-1_{1..993}	n338931|CR599621|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1358|NULL|-1.2168000|-0.3516275	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338931|CR599621|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1358|NULL|-1.2168000|-0.3516275	chr2	105474039	105475031	+	NA	NA	NA	NA	POU3F3	NA	chr2:105471969-105473471	inter
CUST_37876_PI429285431	0.88859683	A	0.9068583	A	0.987421887655986	0	lncRNA	38967-1_{1..519}	n346411|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1961|NULL|-1.3089300|-0.2864953	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346411|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1961|NULL|-1.3089300|-0.2864953	chr2	238832046	238832564	-	NA	NA	NA	NA	UBE2F	NA	chr2:238875587-238881314	inter
CUST_3558_PI429285431	1.3538218	A	1.3649184	A	0.992337927480801	0	lncRNA	3528-1_{1..369}	"transcript_id ""ENST00000605780.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605780.1"" | genecode_v17"	chr9	132806992	132807360	+	ENSG00000270755.1	ENST00000605780.1	RP11-138E2.1	RP11-138E2.1-001	FNBP1	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-22.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90chr9:132796992-132805473"	NA	inter
CUST_47528_PI429285431	14.845901	P	15.227212	P	0.767739616324184	0	lncRNA	51539-1_{1..710}	"gi|375065828|ref|NR_046308.1| Homo sapiens translocator protein (18kDa) (TSPO), transcript variant PBR-S, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375065828|ref|NR_046308.1| Homo sapiens translocator protein (18kDa) (TSPO), transcript variant PBR-S, non-coding RNA"	Chr22	 43547520	 43548229	+	706	NR_046308.1	NA	NA	NA	NA	NA	inter
CUST_5849_PI429285431	0.88620895	A	0.8967574	A	0.992715036550392	0	lncRNA	5778-1_{1..265}	"transcript_id ""ENST00000582101.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582101.1"" | genecode_v17"	chr17	 38959996	 38960260	+	ENSG00000264488.1	ENST00000582101.1	RP11-605F20.1	RP11-605F20.1-001	KRT10	NA	chr17:38974369-38975548	inter
CUST_38992_PI429285431	1.5347884	A	0.90411264	A	1.54829004454173	0	lncRNA	39973-1_{1..695}	n385256|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vdd.1||-1.1495700|-0.4095207	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385256|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vdd.1||-1.1495700|-0.4095207	chr7	105208141	105208835	+	NA	NA	NA	NA	RINT1	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80chr7:105198141-105208124"	NA	inter
CUST_18790_PI429285431	4.5290785	P	6.4452457	P	0.264957487031598	0	lncRNA	20486-1_{1..1873}	lnc-MMP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MMP3-1:1	chr11	102745566	102747438	-	lnc-MMP3-1	lnc-MMP3-1:1	ENSG00000110347	MMP12	MMP12	NA	chr11:102735566-102745764	inner
LNCA_21_P0007504	0.90708363	A	1.37684	A	0.722086527262904	0	lncRNA	AK123448	NA	AK123448	NA	Hs.439682	XLOC_009913	NA	NA	THC2527884	NA	"BROAD Institute lincRNA (XLOC_009913), lincRNA [TCONS_00020238]"	chr12:121627159-121627218	hs|12q24.31	Agilent_HUMAN_G3V2	AK123448	AK123448	chr12	121627159	121627218	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14579_PI429285431	8.253237	P	7.8549633	P	1.31792995828777	0	lncRNA	16245-1_{1..1048}	lnc-RP11-342M21.2.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-342M21.2.1-1:5	chr15	 67279496	 67280543	-	lnc-RP11-342M21.2.1-1	lnc-RP11-342M21.2.1-1:5	XLOC_011510	linc-LCTL-2	NA	NA	NA	inter
LNCA_21_P0007245	1.0594629	A	0.92414314	A	1.09833622286727	0	lncRNA	TCONS_00019406	NA	NA	NA	NA	XLOC_009229	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009229), lincRNA [TCONS_00019406]"	chr11:79992207-80007879	hs|11q14.1	Agilent_HUMAN_G3V2	TCONS_00019406	TCONS_00019406	chr11	 79992207	 80007879	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18047_PI429285431	1.0769843	A	1.4768783	A	0.757913967878073	0	lncRNA	19783-1_{1..3000}	lnc-RGL4-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGL4-4:4	chr22	 23854168	 23857167	+	lnc-RGL4-4	lnc-RGL4-4:4	XLOC_014172	linc-RGL4-6	NA	NA	NA	inter
CUST_37822_PI429285431	4.3262477	P	4.877281	P	0.682531104713553	0	lncRNA	38914-1_{1..439}	n346342|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1892|NULL|-1.3360200|-0.3261204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346342|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1892|NULL|-1.3360200|-0.3261204	chr15	 32806172	 32806610	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009768	5.603175	P	6.6526527	P	0.483143045454291	0	lncRNA	TCONS_00027368	NA	NA	NA	NA	XLOC_013350	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013350), lincRNA [TCONS_00027368]"	chr19:44405166-44405107	hs|19q13.31	Agilent_HUMAN_G3V2	TCONS_00027368	TCONS_00027368	chr19	 44405107	 44405166	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14577_PI429285431	0.9084821	A	1.1636912	A	0.837865688064651	0	lncRNA	16243-1_{1..744}	lnc-CST9LP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CST9LP1-2:1	chr20	 23499254	 23499997	-	lnc-CST9LP1-2	lnc-CST9LP1-2:1	XLOC_013694	linc-CST11	NA	NA	NA	inter
CUST_31950_PI429285431	3.6103337	P	4.1796293	P	0.673945764070878	0	lncRNA	33675-2_{3001..3985}	n338505|X87831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|902|NULL|18.0934000|-0.1505264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338505|X87831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|902|NULL|18.0934000|-0.1505264	chr1	208205290	208206274	-	NA	NA	NA	NA	PLXNA2	NA	chr1:208195587-208393658	inner
CUST_24918_PI429285431	0.90261054	A	0.9098486	A	0.994995523447182	0	lncRNA	26459-1_{1..551}	lnc-APTX-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-APTX-1:1	chr9	 32841479	 32842029	-	lnc-APTX-1	lnc-APTX-1:1	ENSG00000231193.1	RP11-462B18.2	NA	NA	NA	inter
LNCA_21_P0012066	0.9019723	A	0.9159391	A	0.990365662447123	0	lncRNA	ENST00000416262	NA	NA	NA	NA	XLOC_l2_008014	NA	ENST00000416262	THC2650415	NA	"BROAD Institute lincRNA (XLOC_l2_008014), lincRNA [TCONS_l2_00015797]"	chr2:51429287-51429228	hs|2p16.3	Agilent_HUMAN_G3V2	ENST00000416262	ENST00000416262	chr2	 51429228	 51429287	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39574_PI429285431	6.066351	P	6.2745104	P	0.86564091759591	0	lncRNA	40517-2_{3001..3609}	n387546|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011hjx.1||-0.4863090|-0.3469563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387546|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011hjx.1||-0.4863090|-0.3469563	chr6	  1164362	  1164970	+	NA	NA	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80"	NA	inter
CUST_49056_PI429285431	1.5355941	A	1.361608	A	1.12817126776075	0	lncRNA	52884-1_{1..548}	hg19_lincRNAsTranscripts_TCONS_l2_00021476 range=chr4:188454034-188567587 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021476 range=chr4:188454034-188567587 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	188454034	188454581	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49523_PI429285431	3.770321	P	3.8842149	P	0.924090530259997	0	lncRNA	53315-1_{1..226}	hg19_lincRNAsTranscripts_TCONS_l2_00024192 range=chr6:35511376-35512710 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024192 range=chr6:35511376-35512710 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 35511376	 35511601	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29853_PI429285431	3.7996278	P	3.7153313	P	1.06017064530731	0	lncRNA	31616-1_{1..329}	n333758|L09085|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191946|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191946|2.3586700|-0.0702413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333758|L09085|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191946|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191946|2.3586700|-0.0702413	chr2	 89512906	 89513234	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34407_PI429285431	0.8860817	A	0.89255565	A	0.995522653147241	0	lncRNA	35889-1_{1..1351}	n341277|AK057770|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3746|NULL|-1.0726000|-0.2589243	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341277|AK057770|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3746|NULL|-1.0726000|-0.2589243	chr7	 95747958	 95749308	+	NA	NA	NA	NA	SLC25A13	NA	chr7:95749532-95759307	inter
LNCA_21_P0010923	0.8908408	A	0.8997167	A	0.993866581616795	0	lncRNA	ENST00000450677	NA	NA	NA	NA	XLOC_l2_001605	NA	ENST00000450677	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001605), lincRNA [TCONS_l2_00003986]"	chr10:61370947-61371006	hs|10q21.2	Agilent_HUMAN_G3V2	ENST00000450677	ENST00000450677	chr10	 61370947	 61371006	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010232	2.603574	A	1.7870393	A	1.76117064145441	0	lncRNA	TCONS_00028994	NA	NA	NA	NA	XLOC_013913	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013913), lincRNA [TCONS_00028994]"	chr21:33891970-33892029	hs|21q22.11	Agilent_HUMAN_G3V2	TCONS_00028994	TCONS_00028994	chr21	 33891970	 33892029	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001984	0.887027	A	0.8937135	A	0.995375995158221	0	lncRNA	ENST00000442867	NA	NA	NA	NA	XLOC_001922	NA	ENST00000442867	NA	NA	"BROAD Institute lincRNA (XLOC_001922), lincRNA [TCONS_00003136]"	chr2:242786980-242787039	hs|2q37.3	Agilent_HUMAN_G3V2	ENST00000442867	ENST00000442867	chr2	242786980	242787039	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51262_PI429285431	0.88646317	A	0.89424056	A	0.994623628745099	0	lncRNA	54869-1_{1..485}	hg19_lincRNAsTranscripts_TCONS_l2_00008962 range=chr15:28954720-28965235 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008962 range=chr15:28954720-28965235 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 28954720	 28955204	-	NA	NA	NA	NA	LOC653720	NA	chr15:28947100-28975235	inter
CUST_36083_PI429285431	1.0485429	A	0.89997435	A	1.1084690970893	0	lncRNA	37387-1_{1..2123}	n344671|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_220|NULL|-1.3861300|-0.2599447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344671|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_220|NULL|-1.3861300|-0.2599447	chr1	234756939	234759061	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20"	NA	inter
CUST_43062_PI429285431	1.0750492	A	0.89418733	A	1.13356087545397	0	lncRNA	46874-1_{1..104}	ENST00000516208 ncrna:snRNA chromosome:GRCh37:3:324372:324475:-1 gene:ENSG00000252017 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516208 ncrna:snRNA chromosome:GRCh37:3:324372:324475:-1 gene:ENSG00000252017 gene_biotype:snRNA transcript_biotype:snRNA	chr3	   324372	   324475	-	ENSG00000252017	ENST00000516208	NA	NA	CHL1	NA	chr3:314372-334475	inner
LNCA_21_P0002367	0.8842104	A	1.2177601	A	0.793581500510678	0	lncRNA	TCONS_00004049	NA	NA	NA	NA	XLOC_001891	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001891), lincRNA [TCONS_00004049]"	chr2:229379293-229379352	hs|2q36.3	Agilent_HUMAN_G3V2	TCONS_00004049	TCONS_00004049	chr2	229379293	229379352	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13026_PI429285431	8.230836	P	8.321344	P	0.939191983859072	0	lncRNA	14653-2_{3001..3875}	lnc-QRSL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-QRSL1-2:1	chr6	107167110	107167984	+	lnc-QRSL1-2	lnc-QRSL1-2:1	XLOC_005414	linc-C6orf203-1	NA	NA	NA	inter
CUST_20743_PI429285431	3.1666384	P	4.005905	P	0.558927630004123	0	lncRNA	22377-1_{1..821}	lnc-KCTD6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCTD6-3:1	chr3	 58619783	 58620603	+	lnc-KCTD6-3	lnc-KCTD6-3:1	ENSG00000244383.1	RP11-475O23.3	FAM3D	"hg19_refFlat_FAM3D:range=chr3:58620006-586412905'pad=0,hg19_refFlat_FAM3D:range=chr3:58620006-586412905'pad=0 3'pad=0 strand=- repeatMasking=none,-96.70chr3:58619670-58630167"	NA	inner
CUST_44809_PI429285431	0.8841593	A	1.9944339	A	0.463205856777676	0	lncRNA	49343-1_{1..1734}	"gi|255652940|ref|NR_028291.1| Homo sapiens vanin 3 (VNN3), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|255652940|ref|NR_028291.1| Homo sapiens vanin 3 (VNN3), transcript variant 1, non-coding RNA"	Chr6	133043926	133045659	-	55350	NR_028291.1	NA	NA	NA	NA	NA	inter
CUST_20109_PI429285431	9.090655	P	8.563801	P	1.44078393486285	0	lncRNA	21757-1_{1..318}	lnc-SYNJ2BP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SYNJ2BP-1:1	chr14	 70883617	 70883934	-	lnc-SYNJ2BP-1	lnc-SYNJ2BP-1:1	ENSG00000258644.1	RP11-718G2.3	SYNJ2BP-COX16	NA	chr14:70873617-70883807	inner
CUST_17388_PI429285431	1.561415	A	1.1092943	A	1.36804975407628	0	lncRNA	19111-1_{1..331}	lnc-CTNNA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTNNA1-1:1	chr5	137928874	137929204	+	lnc-CTNNA1-1	lnc-CTNNA1-1:1	XLOC_004572	linc-CTNNA1-1	NA	NA	NA	inter
LNCA_21_P0002525	0.88192105	A	0.88322645	A	0.999095574909638	0	lncRNA	TCONS_00004514	NA	NA	NA	NA	XLOC_002420	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002420), lincRNA [TCONS_00004514]"	chr2:183537365-183537306	hs|2q32.1	Agilent_HUMAN_G3V2	TCONS_00004514	TCONS_00004514	chr2	183537306	183537365	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14065_PI429285431	0.87881535	A	0.88108164	A	0.998430360650607	0	lncRNA	15711-1_{1..380}	lnc-NAIF1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAIF1-1:2	chr9	130819435	130819814	-	lnc-NAIF1-1	lnc-NAIF1-1:2	XLOC_007857	linc-FAM102A	NAIF1	NA	chr9:130823512-130829599	inter
CUST_37429_PI429285431	7.3127513	P	7.284098	P	1.02005949508387	0	lncRNA	38532-3_{6001..9000}	n345881|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1430|NULL|-1.3048800|-0.2856205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n345881|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1430|NULL|-1.3048800|-0.2856205	chr12	105869638	105872637	+	NA	NA	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-18.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00"	NA	inter
CUST_6739_PI429285431	4.1338315	P	3.630043	P	1.41793215069707	0	lncRNA	6687-1_{1..1854}	"transcript_id ""ENST00000371169.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000371169.1"" | genecode_v17"	chr20	 56532182	 56534035	-	ENSG00000203971.1	ENST00000371169.1	RP13-379L11.2	RP13-379L11.2-001	NA	NA	NA	inter
CUST_46163_PI429285431	0.8907134	A	1.4781021	A	0.665546466731773	0	lncRNA	50412-1_{1..1717}	"gi|310123001|ref|XR_109110.1| PREDICTED: Homo sapiens uncharacterized LOC100128840 (LOC100128840), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123001|ref|XR_109110.1| PREDICTED: Homo sapiens uncharacterized LOC100128840 (LOC100128840), misc_RNA"	NA	NA	NA	NA	NA	XR_109110.1	NA	NA	NA	NA	NA	Unknown
CUST_19037_PI429285431	0.8961633	A	1.3099083	A	0.750672220246741	0	lncRNA	20727-1_{1..875}	lnc-GAS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GAS2-1:1	chr11	 22898046	 22898920	+	lnc-GAS2-1	lnc-GAS2-1:1	ENSG00000246225	RP11-17A1.3	NA	NA	NA	inter
LNCA_21_P0012694	0.8830091	A	0.8831227	A	0.99992126158032	0	lncRNA	TCONS_l2_00021371	NA	NA	NA	NA	XLOC_l2_011327	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011327), lincRNA [TCONS_l2_00021371]"	chr4:158850773-158850714	hs|4q32.1	Agilent_HUMAN_G3V2	TCONS_l2_00021371	TCONS_l2_00021371	chr4	158850714	158850773	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38558_PI429285431	0.8984811	A	1.2253604	A	0.797259174736878	0	lncRNA	39568-1_{1..2049}	n383434|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002nqf.1||0.3004520|-0.3211667	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383434|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002nqf.1||0.3004520|-0.3211667	chr19	 21763357	 21765405	-	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20"	NA	inter
LNCA_21_P0007453	0.8834908	A	0.8835099	A	0.999986760976488	0	lncRNA	TCONS_00020018	NA	NA	NA	NA	XLOC_009323	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009323), lincRNA [TCONS_00020018]"	chr11:126925463-126925522	hs|11q24.2	Agilent_HUMAN_G3V2	TCONS_00020018	TCONS_00020018	chr11	126925463	126925522	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7785_PI429285431	0.8803824	A	0.88128126	A	0.999377151775817	0	lncRNA	9409-1_{1..498}	lnc-RP11-62N21.1.1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-62N21.1.1-5:3	chr4	134017891	134018388	-	lnc-RP11-62N21.1.1-5	lnc-RP11-62N21.1.1-5:3	ENSG00000250241	RP11-9G1.3	NA	NA	NA	inter
CUST_23576_PI429285431	1.5760502	A	1.0864025	A	1.40410195813704	0	lncRNA	25144-1_{1..3000}	lnc-MTPAP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-MTPAP-1:1	chr10	 30591755	 30594754	-	lnc-MTPAP-1	lnc-MTPAP-1:1	ENSG00000259994.1	RP11-305E6.4	MTPAP	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chr10:30598730-30604995"	NA	inter
CUST_51373_PI429285431	2.503396	A	1.7408091	A	1.69652995099606	0	lncRNA	54969-2_{3001..3794}	hg19_lincRNAsTranscripts_TCONS_l2_00009364 range=chr15:100326087-100348713 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009364 range=chr15:100326087-100348713 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	100329087	100329880	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_LOC100505679:range=chr15:84841254-848508955'pad=0,hg19_refFlat_LOC100505679:range=chr15:84841254-848508955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_GOLGA8A:range=chr15:34673612-346818925'pad=0,hg19_refFlat_GOLGA8A:range=chr15:34673612-346818925'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_UBE2Q2:range=chr15:76136695-761917995'pad=0,hg19_refFlat_UBE2Q2:range=chr15:76136695-761917995'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_GOLGA8B:range=chr15:34819833-348281135'pad=0,hg19_refFlat_GOLGA8B:range=chr15:34819833-348281135'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00"	NA	inter
CUST_37568_PI429285431	0.89929575	A	0.89898336	A	1.00021655569253	0	lncRNA	38671-1_{1..2492}	n346045|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1595|NULL|-1.3093300|-0.3101116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346045|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1595|NULL|-1.3093300|-0.3101116	chr15	 90818367	 90820858	-	NA	NA	NA	NA	NGRN	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.71;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PERP:range=chr6:138413179-1384284775'pad=0,hg19_refFlat_PERP:range=chr6:138413179-1384284775'pad=0 3'pad=0 strand=- repeatMasking=none,-97.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr15:90808895-90815443"	NA	inter
CUST_49442_PI429285431	3.692141	P	2.7435727	A	1.92995645929887	0	lncRNA	53242-2_{3001..3647}	hg19_lincRNAsTranscripts_TCONS_l2_00022682 range=chr5:180255984-180262712 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022682 range=chr5:180255984-180262712 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	180258984	180259630	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27605_PI429285431	7.4928045	P	7.435013	P	1.04087115887803	0	lncRNA	29184-1_{1..655}	n324808|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194069|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194069|-0.8361720|-0.1632051	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324808|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194069|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194069|-0.8361720|-0.1632051	chr21	 34474847	 34475501	+	NA	NA	NA	NA	NA	"hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-60.70"	NA	inter
CUST_25547_PI429285431	7.127448	P	7.2684426	P	0.906893723425258	0	lncRNA	27077-1_{1..681}	lnc-PABPC4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PABPC4-2:1	chr1	 40011405	 40012085	-	lnc-PABPC4-2	lnc-PABPC4-2:1	ENSG00000182109.3	RP11-69E11.4	NA	"hg19_refFlat_BMP8B:range=chr1:40226091-402541575'pad=0,hg19_refFlat_BMP8B:range=chr1:40226091-402541575'pad=0 3'pad=0 strand=- repeatMasking=none,-100.30;hg19_refFlat_BMP8A:range=chr1:39957664-399914705'pad=0,hg19_refFlat_BMP8A:range=chr1:39957664-399914705'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70"	NA	inter
LNCA_21_P0004868	0.88773745	A	0.8882375	A	0.99965345181406	0	lncRNA	THC2625315	NA	NA	NA	NA	XLOC_005220	NA	NA	THC2625315	NA	"BROAD Institute lincRNA (XLOC_005220), lincRNA [TCONS_00011758]"	chr6:027680817-027680876	hs|6p22.1	Agilent_HUMAN_G3V2	THC2625315	THC2625315	chr6	 27680817	 27680876	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4613_PI429285431	0.9055239	A	0.9064558	A	0.999354264719258	0	lncRNA	4559-2_{3001..3336}	"transcript_id ""ENST00000421190.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421190.2"" | genecode_v17"	chr13	 44811254	 44811589	-	ENSG00000230731.2	ENST00000421190.2	RP11-478K15.6	RP11-478K15.6-001	NA	NA	NA	inter
CUST_36294_PI429285431	0.91430354	A	1.247334	A	0.793867169628276	0	lncRNA	37525-1_{1..547}	n344820|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_369|NULL|-1.3260800|-0.4870156	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344820|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_369|NULL|-1.3260800|-0.4870156	chr5	 55896408	 55896954	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18214_PI429285431	0.88519466	A	1.074039	A	0.877308201049343	0	lncRNA	19949-1_{1..430}	lnc-AC006035.2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC006035.2-1:5	chr7	 16310142	 16310571	+	lnc-AC006035.2-1	lnc-AC006035.2-1:5	ENSG00000241044	AC004741.4	ISPD	NA	chr7:16300142-16320229	inter
CUST_16681_PI429285431	0.88131225	A	0.881831	A	0.999640494537665	0	lncRNA	18386-1_{1..3000}	lnc-TCF21-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TCF21-1:2	chr6	134172335	134175334	+	lnc-TCF21-1	lnc-TCF21-1:2	XLOC_005467	linc-TCF21	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20"	NA	inter
CUST_17045_PI429285431	5.6205587	P	5.9869385	P	0.775726611699166	0	lncRNA	18755-1_{1..613}	lnc-MAPK8IP2-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAPK8IP2-1:11	chr22	 51038370	 51038982	+	lnc-MAPK8IP2-1	lnc-MAPK8IP2-1:11	XLOC_014288	linc-MAPK8IP2	MAPK8IP2	NA	chr22:51039131-51048503	inter
CUST_4953_PI429285431	0.8958882	A	1.2598009	A	0.777054288275364	0	lncRNA	4897-1_{1..384}	"transcript_id ""ENST00000555975.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555975.1"" | genecode_v17"	chr14	 91288709	 91289092	-	ENSG00000258884.1	ENST00000555975.1	CTD-3035D6.2	CTD-3035D6.2-001	TTC7B	NA	chr14:91278709-91282761	inter
CUST_24789_PI429285431	0.89098716	A	0.9005295	A	0.993407579911264	0	lncRNA	26332-1_{1..580}	lnc-PYDC2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PYDC2-4:2	chr3	192000787	192001366	+	lnc-PYDC2-4	lnc-PYDC2-4:2	ENSG00000231383.2	FGF12-AS1	FGF12	NA	chr3:191990787-192010886	inner
LNCA_21_P0004248	0.8875877	A	2.3752258	A	0.356595870183878	0	lncRNA	TCONS_00009956	NA	NA	NA	NA	XLOC_004375	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004375), lincRNA [TCONS_00009956]"	chr5:45227611-45228200	hs|5p12	Agilent_HUMAN_G3V2	TCONS_00009956	TCONS_00009956	chr5	 45227611	 45228200	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003651	1.5779321	A	0.88897496	A	1.61211776901529	0	lncRNA	TCONS_00008252	NA	NA	NA	NA	XLOC_003686	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003686), lincRNA [TCONS_00008252]"	chr4:129581792-129581851	hs|4q28.2	Agilent_HUMAN_G3V2	TCONS_00008252	TCONS_00008252	chr4	129581792	129581851	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22283_PI429285431	2.4912016	A	2.8314304	A	0.789916027507278	0	lncRNA	23883-1_{1..2041}	lnc-HEBP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HEBP1-1:1	chr12	 13192653	 13194693	-	lnc-HEBP1-1	lnc-HEBP1-1:1	ENSG00000256175.1	RP11-377D9.2	KIAA1467	NA	chr12:13182653-13203613	inter
CUST_50270_PI429285431	6.560686	P	6.9780054	P	0.74881466787452	0	lncRNA	53993-1_{1..2219}	hg19_lincRNAsTranscripts_TCONS_l2_00029368 range=chr9:69112479-69148492 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029368 range=chr9:69112479-69148492 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 69112479	 69114697	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31835_PI429285431	1.1047846	A	1.4831116	A	0.769329214828029	0	lncRNA	33570-1_{1..2454}	n338381|AK125540|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|777|NULL|-0.9079580|-0.1920421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338381|AK125540|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|777|NULL|-0.9079580|-0.1920421	chr14	 73030782	 73033235	+	NA	NA	NA	NA	RGS6	NA	chr14:73020782-73033238	inner
CUST_8962_PI429285431	0.885975	A	0.90025365	A	0.990151610172887	0	lncRNA	10496-1_{1..1640}	lnc-LXN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-LXN-1:1	chr3	158287960	158289599	-	lnc-LXN-1	lnc-LXN-1:1	ENSG00000243150	RP11-538P18.2	MLF1	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50chr3:158288953-158298855"	NA	inter
CUST_30336_PI429285431	0.93936753	A	1.1829561	A	0.844641729313231	0	lncRNA	32112-1_{1..636}	n335256|AY576870|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255600|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255600|1.4059200|-0.1065496	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335256|AY576870|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255600|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255600|1.4059200|-0.1065496	chr5	175298501	175299136	+	NA	NA	NA	NA	CPLX2	NA	chr5:175288501-175311023	inner
CUST_14931_PI429285431	1.8779299	A	2.407768	A	0.692632457274745	0	lncRNA	16594-1_{1..267}	lnc-IQCK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IQCK-1:1	chr16	 19940450	 19940716	+	lnc-IQCK-1	lnc-IQCK-1:1	XLOC_011660	linc-ACSM5-6	NA	NA	NA	inter
CUST_9040_PI429285431	0.8945414	A	1.3370758	A	0.735840812021769	0	lncRNA	10566-1_{1..1166}	lnc-PTS-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PTS-1:4	chr11	112161970	112163135	+	lnc-PTS-1	lnc-PTS-1:4	ENSG00000250303	RP11-356J5.12	NA	NA	NA	inter
CUST_49201_PI429285431	0.89109725	A	0.9054876	A	0.990074951107557	0	lncRNA	53023-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00020851 range=chr4:159178384-159202705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020851 range=chr4:159178384-159202705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	159181384	159184383	+	NA	NA	NA	NA	TMEM144	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.81;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60chr4:159168384-159176439"	NA	inter
CUST_28366_PI429285431	0.89973354	A	0.90901196	A	0.993589325951512	0	lncRNA	30016-1_{1..657}	n325678|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045391|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045391|-1.2521000|-0.3552930	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325678|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045391|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045391|-1.2521000|-0.3552930	chr13	 80515805	 80516461	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38179_PI429285431	0.92161477	A	0.96896803	A	0.967710043264555	0	lncRNA	39247-1_{1..2388}	n381439|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jby.2||0.4209320|-0.4294782	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n381439|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jby.2||0.4209320|-0.4294782	chr10	 45594932	 45597319	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50"	NA	inter
CUST_38904_PI429285431	5.218904	P	5.3480735	P	0.914357656727783	0	lncRNA	39891-2_{3001..3784}	n384950|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003paw.3||0.5399810|-0.3087655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n384950|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003paw.3||0.5399810|-0.3087655	chr6	 52532198	 52532981	+	NA	NA	NA	NA	TMEM14A	NA	chr6:52535884-52543951	inter
CUST_9865_PI429285431	3.9923608	P	4.131632	P	0.907977718650405	0	lncRNA	11388-1_{1..558}	lnc-RP11-93B14.6.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-93B14.6.1-4:1	chr20	 61200185	 61200742	-	lnc-RP11-93B14.6.1-4	lnc-RP11-93B14.6.1-4:1	XLOC_013835	linc-GATA5-3	NA	NA	NA	inter
CUST_16872_PI429285431	2.282909	A	3.5169573	P	0.425122847102299	0	lncRNA	18579-1_{1..541}	lnc-AC092329.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092329.1-1:3	chr19	 23456878	 23457418	-	lnc-AC092329.1-1	lnc-AC092329.1-1:3	XLOC_013274	linc-ZNF99-6	NA	NA	NA	inter
CUST_44610_PI429285431	0.90090954	A	0.9155033	A	0.989935367243062	0	lncRNA	49183-2_{3001..3166}	"gi|28476830|ref|NR_001281.1| Homo sapiens protocadherin beta 18 pseudogene (PCDHB18), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|28476830|ref|NR_001281.1| Homo sapiens protocadherin beta 18 pseudogene (PCDHB18), non-coding RNA"	NA	NA	NA	NA	NA	NR_001281.1	NA	NA	NA	NA	NA	Unknown
CUST_23739_PI429285431	3.903329	P	2.1271343	A	3.42521535952391	0	lncRNA	25302-1_{1..595}	lnc-KIAA0101-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0101-1:1	chr15	 64665897	 64666491	-	lnc-KIAA0101-1	lnc-KIAA0101-1:1	ENSG00000259316.1	CTD-2116N17.1	KIAA0101	NA	chr15:64657193-64673702	inner
CUST_33752_PI429285431	0.90731734	A	0.903251	A	1.00282254801514	0	lncRNA	35308-1_{1..3000}	n340532|AF181250|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2994|NULL|10.4430000|-0.1014007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340532|AF181250|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2994|NULL|10.4430000|-0.1014007	chr5	 80256557	 80259556	+	NA	NA	NA	NA	RASGRF2	NA	chr5:80256558-80521953	inter
CUST_38319_PI429285431	2.9264026	A	3.2135298	P	0.819532347660644	0	lncRNA	39366-1_{1..1961}	n382024|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uzi.1||-1.1503200|-0.3581794	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382024|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uzi.1||-1.1503200|-0.3581794	chr13	 44835105	 44837065	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17302_PI429285431	3.0930455	A	3.565114	P	0.720930204731858	0	lncRNA	19020-1_{1..420}	lnc-PPP4R1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP4R1-2:1	chr18	  9334135	  9334554	-	lnc-PPP4R1-2	lnc-PPP4R1-2:1	XLOC_012754	linc-LAMA1-5	TWSG1	NA	chr18:9334765-9344462	inter
CUST_6792_PI429285431	0.90559936	A	1.1132469	A	0.865948096562486	0	lncRNA	6740-1_{1..790}	"transcript_id ""ENST00000450653.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450653.1"" | genecode_v17"	chr21	 20418629	 20419418	+	ENSG00000235965.1	ENST00000450653.1	AP000431.1	AP000431.1-001	NA	"hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70"	NA	inter
CUST_48833_PI429285431	2.3627326	A	1.9339609	A	1.34608704020328	0	lncRNA	52671-1_{1..1280}	hg19_lincRNAsTranscripts_TCONS_l2_00019132 range=chr3:6673251-6847139 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019132 range=chr3:6673251-6847139 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	  6673251	  6674530	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34467_PI429285431	7.0934196	P	5.913111	P	2.26625248198416	0	lncRNA	35937-2_{3001..5662}	n341339|BX647377|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3808|NULL|-1.0231700|-0.2929093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341339|BX647377|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3808|NULL|-1.0231700|-0.2929093	chr7	139249315	139251976	-	NA	NA	NA	NA	HIPK2	NA	chr7:139246316-139261958	inner
CUST_17582_PI429285431	1.3904814	A	2.3404498	A	0.517643799982077	0	lncRNA	19307-1_{1..456}	lnc-AF165138.7.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AF165138.7.1-2:3	chr21	 16125645	 16126100	-	lnc-AF165138.7.1-2	lnc-AF165138.7.1-2:3	XLOC_014001	linc-SAMSN1-4	NA	NA	NA	inter
CUST_31426_PI429285431	5.7325215	P	6.1993437	P	0.723556609692249	0	lncRNA	33197-1_{1..1476}	n337892|BC080552|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|275|NULL|-0.9586710|-0.1717702	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337892|BC080552|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|275|NULL|-0.9586710|-0.1717702	chr1	 41972262	 41973737	-	NA	NA	NA	NA	HIVEP3	NA	chr1:41975684-41984050	inner
LNCA_21_P0006674	0.8957891	A	0.9066535	A	0.992497655908642	0	lncRNA	ENST00000451438	NA	NA	NA	NA	XLOC_008466	NA	ENST00000451438	NA	NA	"BROAD Institute lincRNA (XLOC_008466), lincRNA [TCONS_00017818]"	chr10:43823321-43823380	hs|10q11.21	Agilent_HUMAN_G3V2	ENST00000451438	ENST00000451438	chr10	 43823321	 43823380	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34922_PI429285431	0.8997725	A	0.90870476	A	0.993827756206819	0	lncRNA	36343-2_{3001..3787}	n341839|S57551|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4318|NULL|11.9602000|-0.1445185	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341839|S57551|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4318|NULL|11.9602000|-0.1445185	chr12	 14768565	 14769351	-	NA	NA	NA	NA	GUCY2C	NA	chr12:14765566-14849519	inner
CUST_17495_PI429285431	0.8953464	A	0.9123302	A	0.988296749007129	0	lncRNA	19221-2_{3001..3867}	lnc-C6orf123-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-C6orf123-2:1	chr6	168099884	168100750	-	lnc-C6orf123-2	lnc-C6orf123-2:1	XLOC_005923	linc-TCP10-2	NA	NA	NA	inter
LNCA_21_P0000959	3.95573	P	4.126334	P	0.888470635378275	0	lncRNA	ENST00000448791	NA	NA	NA	NA	XLOC_000104	NA	ENST00000448791	NA	NA	"BROAD Institute lincRNA (XLOC_000104), lincRNA [TCONS_00000170]"	chr1:27204677-27204736	hs|1p36.11	Agilent_HUMAN_G3V2	ENST00000448791	ENST00000448791	chr1	 27204677	 27204736	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12919_PI429285431	5.469291	P	5.3024435	P	1.12260275113956	0	lncRNA	14547-1_{1..416}	lnc-CCDC80-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC80-1:1	chr3	112368163	112368578	-	lnc-CCDC80-1	lnc-CCDC80-1:1	XLOC_003217	linc-CCDC80-1	CCDC80	NA	chr3:112358163-112359977	inter
CUST_18802_PI429285431	1.0817839	A	2.516335	A	0.369961974467697	0	lncRNA	20497-1_{1..645}	lnc-AC016745.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC016745.1-1:4	chr2	114300124	114300768	-	lnc-AC016745.1-1	lnc-AC016745.1-1:4	ENSG00000231943	AL078621.4	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20"	NA	inter
CUST_2985_PI429285431	1.8201107	A	1.4884543	A	1.25845741683258	0	lncRNA	2964-1_{1..735}	"transcript_id ""ENST00000519814.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519814.1"" | genecode_v17"	chr8	  8279934	  8280668	-	ENSG00000253505.1	ENST00000519814.1	CTA-398F10.1	CTA-398F10.1-002	NA	NA	NA	inter
CUST_41245_PI429285431	6.205111	P	6.6383114	P	0.740617015202869	0	lncRNA	42175-1_{1..89}	ENST00000577096 ncrna:miRNA chromosome:GRCh37:HG104_HG975_PATCH:145027361:145027449:-1 gene:ENSG00000263094 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577096 ncrna:miRNA chromosome:GRCh37:HG104_HG975_PATCH:145027361:145027449:-1 gene:ENSG00000263094 gene_biotype:miRNA transcript_biotype:miRNA	chrHG104_HG975_PATCH	145027361	145027449	-	ENSG00000263094	ENST00000577096	NA	NA	NA	NA	NA	Unknown
CUST_33102_PI429285431	1.7116909	A	0.8903147	A	1.76709083297547	0	lncRNA	34704-1_{1..2920}	n339792|BC040323|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2239|NULL|-0.1837260|-0.2446881	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339792|BC040323|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2239|NULL|-0.1837260|-0.2446881	chr18	 10411604	 10414523	-	NA	NA	NA	NA	NA	"hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.41;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30"	NA	inter
CUST_45435_PI429285431	7.6355867	P	8.036363	P	0.757450596868985	0	lncRNA	49853-1_{1..3000}	"gi|394953819|ref|NR_049766.2| Homo sapiens solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 (SLC25A25), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|394953819|ref|NR_049766.2| Homo sapiens solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 (SLC25A25), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_049766.2	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003497	7.558465	P	7.7409306	P	0.881195724308808	0	lncRNA	ENST00000512219	NA	NA	NA	NA	XLOC_004058	NA	ENST00000512219	NA	NA	"BROAD Institute lincRNA (XLOC_004058), lincRNA [TCONS_00007818]"	chr4:120720313-120720254	hs|4q26	Agilent_HUMAN_G3V2	ENST00000512219	ENST00000512219	chr4	120720254	120720313	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006580	6.3100104	P	6.1963205	P	1.081992050812	0	lncRNA	THC2547329	NA	NA	NA	NA	XLOC_008152	NA	NA	THC2547329	NA	"BROAD Institute lincRNA (XLOC_008152), lincRNA [TCONS_00017504]"	chrX:046458828-046458769	hs|Xp11.23	Agilent_HUMAN_G3V2	THC2547329	THC2547329	chrX	 46458769	 46458828	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_184_PI429201921	3.2575479	P	2.988312	A	1.20516936024822	0	lncRNA	152-1_{1..3000}	TC14002109.hg.1	TCONS_00022380-XLOC_011093 // Rinn lincRNAs // linc-SEL1L-3 chr14:-:85991476-85996332 // chr14 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr14:-:85991476-85996332	NA	Affy_HUMAN_HTA2.0	TCONS_00022380-XLOC_011093	linc-SEL1L-3	chr14	 85991476	 85996332	-	NA	NA	NA	NA	PRAMEF25	NA	chr1:13136777-13145000	Unknown
CUST_51805_PI429285431	1.2445972	A	1.4990978	A	0.83827726058053	0	lncRNA	55356-1_{1..474}	hg19_lincRNAsTranscripts_TCONS_l2_00012404 range=chr19:22486560-22496723 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012404 range=chr19:22486560-22496723 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 22486560	 22487033	+	NA	NA	NA	NA	ZNF729	NA	chr19:22476560-22499978	inner
CUST_44777_PI429285431	4.518744	P	4.3024907	P	1.16171268077342	0	lncRNA	49316-1_{1..1605}	"gi|219842224|ref|NR_026540.1| Homo sapiens solute carrier family 25, member 51 pseudogene 1 (SLC25A51P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219842224|ref|NR_026540.1| Homo sapiens solute carrier family 25, member 51 pseudogene 1 (SLC25A51P1), non-coding RNA"	Chr6	 66497772	 66499376	+	442229	NR_026540.1	NA	NA	NA	NA	NA	inter
CUST_30970_PI429285431	0.8748851	A	0.8790628	A	0.997108427695484	0	lncRNA	32758-1_{1..222}	n337104|DQ471856|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343456|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343456|-0.3548390|-0.2586687	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337104|DQ471856|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343456|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343456|-0.3548390|-0.2586687	chr11	 27062922	 27063143	+	NA	NA	NA	NA	BBOX1	NA	chr11:27062509-27087059	inner
CUST_35617_PI429285431	10.028753	P	9.930326	P	1.07060552277268	0	lncRNA	37030-1_{1..505}	n342756|BC058160|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5259|NULL|2.5015800|-0.1802848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342756|BC058160|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5259|NULL|2.5015800|-0.1802848	chr11	 25609801	 25610305	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31486_PI429285431	1.56782	A	2.534299	A	0.511753510883329	0	lncRNA	33250-1_{1..1941}	n337964|CR605890|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|349|NULL|5.7155200|-0.1868536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337964|CR605890|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|349|NULL|5.7155200|-0.1868536	chr22	 21353392	 21355332	-	NA	NA	NA	NA	LZTR1	NA	chr22:21343392-21353326	inner
CUST_360_PI429285431	4.408977	P	5.220292	P	0.569862198273783	0	lncRNA	352-1_{1..1819}	"transcript_id ""ENST00000401018.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000401018.1"" | genecode_v17"	chr1	113362796	113364614	-	ENSG00000215866.3	ENST00000401018.1	RP11-426L16.8	RP11-426L16.8-001	NA	NA	NA	inter
CUST_11634_PI429285431	0.8754057	A	1.108069	A	0.851062329517364	0	lncRNA	13211-1_{1..906}	lnc-RP11-1070N10.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-1070N10.3.1-1:1	chr14	 95797600	 95798505	+	lnc-RP11-1070N10.3.1-1	lnc-RP11-1070N10.3.1-1:1	XLOC_010915	linc-GLRX5-2	NA	NA	NA	inter
CUST_38191_PI429285431	5.299465	P	5.7350736	P	0.739381781084561	0	lncRNA	39258-2_{3001..3825}	n381507|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kab.1||-1.0242400|-0.2248777	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381507|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kab.1||-1.0242400|-0.2248777	chr10	 80780213	 80781037	-	NA	NA	NA	NA	ZMIZ1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70chr10:80828792-80838536"	NA	inter
CUST_20082_PI429285431	0.882659	A	1.4923193	A	0.655350994082984	0	lncRNA	21730-1_{1..534}	lnc-SLC7A7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC7A7-1:2	chr14	 23235633	 23236166	-	lnc-SLC7A7-1	lnc-SLC7A7-1:2	ENSG00000258458.1	CTD-2555K7.2	SLC7A7	"hg19_refFlat_OXA1L:range=chr14:23235731-232407675'pad=0,hg19_refFlat_OXA1L:range=chr14:23235731-232407675'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60chr14:23242431-23245769"	NA	inner
LNCA_21_P0003294	2.0702193	A	2.346305	A	0.825828607018609	0	lncRNA	BC030754	NA	BC030754	NA	Hs.729517	XLOC_003221	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003221), lincRNA [TCONS_00007239]"	chr3:113432337-113432278	hs|3q13.2	Agilent_HUMAN_G3V2	BC030754	BC030754	chr3	113432278	113432337	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2106_PI429285431	1.0938423	A	1.0408505	A	1.03741404008779	0	lncRNA	2097-1_{1..1687}	"transcript_id ""ENST00000502427.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502427.1"" | genecode_v17"	chr5	 20611949	 20613635	+	ENSG00000251629.2	ENST00000502427.1	RP11-774D14.1	RP11-774D14.1-001	NA	NA	NA	inter
LNCA_21_P0009476	7.066383	P	7.6048346	P	0.688509468596251	0	lncRNA	TCONS_00026328	NA	NA	NA	NA	XLOC_012670	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012670), lincRNA [TCONS_00026328]"	chr18:45194660-45206397	hs|18q21.1	Agilent_HUMAN_G3V2	TCONS_00026328	TCONS_00026328	chr18	 45194660	 45206397	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36060_PI429285431	3.4588046	P	3.4843583	P	0.982443468704974	0	lncRNA	37371-5_{12001..12885}	n344653|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_201|NULL|-1.3065500|-0.2698776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n344653|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_201|NULL|-1.3065500|-0.2698776	chr1	 94176463	 94177347	-	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40"	NA	inner
CUST_30502_PI429285431	6.5815425	P	6.7599096	P	0.883702640489404	0	lncRNA	32282-1_{1..372}	n335657|CR611040|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000290235|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000290235|0.4576410|-0.2840416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335657|CR611040|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000290235|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000290235|0.4576410|-0.2840416	chr14	101201108	101201479	+	NA	NA	NA	NA	DLK1	NA	chr14:101193202-101201467	inner
CUST_20480_PI429285431	0.9006742	A	0.90975356	A	0.993726428756433	0	lncRNA	22123-1_{1..390}	lnc-RMI1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RMI1-1:1	chr9	 86590348	 86590737	+	lnc-RMI1-1	lnc-RMI1-1:1	ENSG00000235298.1	RP11-575L7.8	RMI1	"hg19_refFlat_HNRNPK:range=chr9:86584265-865931675'pad=0,hg19_refFlat_HNRNPK:range=chr9:86584265-865931675'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_HNRNPK:range=chr9:86584322-865931675'pad=0,hg19_refFlat_HNRNPK:range=chr9:86584322-865931675'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10chr9:86595637-86600692"	NA	inner
LNCA_19_P00808072	11.548471	P	10.981324	P	1.48159075351623	0	lncRNA	TCONS_00022876	NA	NA	NA	NA	XLOC_011130	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011130), lincRNA [TCONS_00022876]"	chr14:101538514-101538455	hs|14q32.31	Agilent_HUMAN_G3V2	TCONS_00022876	TCONS_00022876	chr14	101538455	101538514	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014645	0.8854258	A	0.88551605	A	0.999937445423574	0	lncRNA	ENST00000531347	XR_110889	XR_110889	NA	NA	ANO1-AS2	NA	ENST00000531347	THC2544195	NA	"PREDICTED: Homo sapiens ANO1 antisense RNA 2 (non-protein coding) (ANO1-AS2), miscRNA [XR_110889]"	chr11:69918599-69918540	hs|11q13.3	Agilent_HUMAN_G3V2	ENST00000531347	ENST00000531347	chr11	 69918540	 69918599	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6083_PI429285431	2.620905	A	3.50775	P	0.54079548050445	0	lncRNA	6007-1_{1..1907}	"transcript_id ""ENST00000567609.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567609.1"" | genecode_v17"	chr18	 10405130	 10407036	-	ENSG00000260913.1	ENST00000567609.1	RP11-243E13.1	RP11-243E13.1-002	NA	NA	NA	inter
CUST_1737_PI429285431	0.906901	A	0.8982282	A	1.00602963235756	0	lncRNA	1723-1_{1..776}	"transcript_id ""ENST00000510597.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510597.1"" | genecode_v17"	chr4	 36498159	 36498934	-	ENSG00000248215.1	ENST00000510597.1	RP11-722M1.1	RP11-722M1.1-001	NA	NA	NA	inter
LNCA_21_P0007645	0.8873741	A	0.88782847	A	0.999685104305629	0	lncRNA	TCONS_00020597	NA	NA	NA	NA	XLOC_009914	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009914), lincRNA [TCONS_00020597]"	chr12:121830062-121830121	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00020597	TCONS_00020597	chr12	121830062	121830121	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15474_PI429285431	0.9206255	A	0.9256528	A	0.996521405556579	0	lncRNA	17162-1_{1..2540}	lnc-TPRA1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPRA1-1:9	chr3	127218528	127221067	-	lnc-TPRA1-1	lnc-TPRA1-1:9	XLOC_003240	linc-TXNRD3-3	NA	NA	NA	inter
CUST_29879_PI429285431	0.8842381	A	1.1626632	A	0.824490571006255	0	lncRNA	31642-1_{1..262}	n333884|L36869|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193275|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193275|1.3447700|-0.1210874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333884|L36869|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193275|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193275|1.3447700|-0.1210874	chr3	186256701	186256962	-	NA	NA	NA	NA	TBCCD1	NA	chr3:186263856-186267350	inner
CUST_48002_PI429285431	9.645197	P	9.025367	P	1.53669409423863	0	lncRNA	51887-1_{1..2789}	"gi|410173190|ref|XR_172144.1| PREDICTED: Homo sapiens putative NPIP-like protein LOC100132247-like (LOC101060275), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173190|ref|XR_172144.1| PREDICTED: Homo sapiens putative NPIP-like protein LOC100132247-like (LOC101060275), misc_RNA"	NA	NA	NA	NA	NA	XR_172144.1	NA	NA	NA	NA	NA	Unknown
CUST_39437_PI429285431	1.1382059	A	0.8872217	A	1.19001866347762	0	lncRNA	40385-1_{1..942}	n386745|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tns.1||1.1134300|-0.2298537	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n386745|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tns.1||1.1134300|-0.2298537	chr14	 24391458	 24392399	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48366_PI429285431	3.7631936	P	2.9898682	A	1.70920494964126	0	lncRNA	52220-1_{1..730}	hg19_lincRNAsTranscripts_TCONS_l2_00000385 range=chr1:89875697-89886870 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000385 range=chr1:89875697-89886870 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 89875697	 89876426	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17475_PI429285431	0.88118654	A	0.8815039	A	0.999780047003985	0	lncRNA	19201-1_{1..454}	lnc-IAH1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IAH1-2:1	chr2	  9712787	  9713240	+	lnc-IAH1-2	lnc-IAH1-2:1	XLOC_001338	linc-TAF1B-3	NA	NA	NA	inter
CUST_51684_PI429285431	1.0303537	A	0.8864384	A	1.10489961471862	0	lncRNA	55246-1_{1..732}	hg19_lincRNAsTranscripts_TCONS_l2_00010999 range=chr17:76481199-76482655 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010999 range=chr17:76481199-76482655 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 76481199	 76481930	+	NA	NA	NA	NA	DNAH17	"hg19_refFlat_DNAH17:range=chr17:76419987-765711395'pad=0,hg19_refFlat_DNAH17:range=chr17:76419987-765711395'pad=0 3'pad=0 strand=- repeatMasking=none,-98.70chr17:76471199-76492655"	NA	inner
CUST_24450_PI429285431	0.89835036	A	0.9052898	A	0.995201496509795	0	lncRNA	26003-1_{1..259}	lnc-C10orf11-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf11-4:1	chr10	 78738200	 78738458	+	lnc-C10orf11-4	lnc-C10orf11-4:1	ENSG00000226911.1	RP11-443A13.5	KCNMA1	NA	chr10:78728200-78748351	inner
LNCA_21_P0010252	3.1921473	P	3.3104336	P	0.921281341582233	0	lncRNA	TCONS_00029029	NA	NA	NA	NA	XLOC_013950	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013950), lincRNA [TCONS_00029029]"	chr21:43195208-43195267	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029029	TCONS_00029029	chr21	 43195208	 43195267	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35824_PI429285431	0.8938588	A	0.8975755	A	0.997427095481226	0	lncRNA	37228-1_{1..3000}	n344498|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_46|NULL|-1.2951300|-0.3086626	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344498|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_46|NULL|-1.2951300|-0.3086626	chr3	107828598	107831597	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18523_PI429285431	0.8957299	A	0.89634573	A	0.999573230263917	0	lncRNA	20237-1_{1..603}	lnc-RP4-725G10.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP4-725G10.1.1-1:1	chr7	 56183708	 56184310	-	lnc-RP4-725G10.1.1-1	lnc-RP4-725G10.1.1-1:1	ENSG00000185290	RP4-725G10.1	LOC389493	NA	chr7:56182374-56184090	inner
CUST_10766_PI429285431	4.2599506	P	5.303588	P	0.485102863259806	0	lncRNA	12302-1_{1..605}	lnc-MAP3K9-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP3K9-3:1	chr14	 71788391	 71788995	-	lnc-MAP3K9-3	lnc-MAP3K9-3:1	XLOC_011064	linc-MAP3K9-1	NA	NA	NA	inter
CUST_17380_PI429285431	1.1108258	A	1.9497412	A	0.559063708158167	0	lncRNA	19102-1_{1..290}	lnc-IFNG-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IFNG-2:1	chr12	 68100262	 68100551	-	lnc-IFNG-2	lnc-IFNG-2:1	XLOC_010114	linc-GRIP1-3	NA	NA	NA	inter
LNCA_21_P0004998	2.9767208	P	3.8744535	P	0.536729578297217	0	lncRNA	BC050584	NA	BC050584	NA	Hs.311968	XLOC_005595	NA	NA	THC2610962	NA	"BROAD Institute lincRNA (XLOC_005595), lincRNA [TCONS_00012071]"	chr6:6700874-6700815	hs|6p25.1	Agilent_HUMAN_G3V2	BC050584	BC050584	chr6	  6700815	  6700874	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26920_PI429285431	0.9297371	A	0.9018172	A	1.01954107539579	0	lncRNA	28438-1_{1..224}	n323996|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053566|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053566|-1.2330600|-0.2779208	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323996|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053566|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053566|-1.2330600|-0.2779208	chr9	110054254	110054477	-	NA	NA	NA	NA	RAD23B	NA	chr9:110045544-110066921	inner
LNCA_21_P0001759	6.5822086	P	7.441253	P	0.551317614068675	0	lncRNA	TCONS_00002599	NA	NA	NA	NA	XLOC_001219	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001219), lincRNA [TCONS_00002599]"	chr1:223267610-223267551	hs|1q41	Agilent_HUMAN_G3V2	TCONS_00002599	TCONS_00002599	chr1	223267551	223267610	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11005_PI429285431	0.8950258	A	0.91097885	A	0.989003101242419	0	lncRNA	12550-1_{1..466}	lnc-ZNF804B-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF804B-2:4	chr7	 89125948	 89126413	+	lnc-ZNF804B-2	lnc-ZNF804B-2:4	XLOC_006163	linc-STEAP1-3	NA	NA	NA	inter
CUST_7076_PI429285431	0.8909511	A	1.471258	A	0.668821485957882	0	lncRNA	7017-7_{18001..21000}	"transcript_id ""ENST00000604411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000604411.1"" | genecode_v17"	chrX	 73030040	 73033039	+	ENSG00000270641.1	ENST00000604411.1	TSIX	TSIX-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
LNCA_21_P0003760	4.3393064	P	5.0915446	P	0.593681803531795	0	lncRNA	TCONS_00008556	NA	NA	NA	NA	XLOC_004053	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004053), lincRNA [TCONS_00008556]"	chr4:119592221-119592162	hs|4q26	Agilent_HUMAN_G3V2	TCONS_00008556	TCONS_00008556	chr4	119592162	119592221	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48808_PI429285431	2.9489052	A	3.54228	P	0.662790670356597	0	lncRNA	52646-1_{1..822}	hg19_lincRNAsTranscripts_TCONS_l2_00015630 range=chr2:242458387-242459662 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015630 range=chr2:242458387-242459662 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	242458387	242459208	+	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30"	NA	inter
LNCA_21_P0012094	0.90439093	A	0.92010784	A	0.989164994296668	0	lncRNA	TCONS_l2_00015982	NA	NA	NA	NA	XLOC_l2_008288	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008288), lincRNA [TCONS_l2_00015982]"	chr2:139192007-139191948	hs|2q22.1	Agilent_HUMAN_G3V2	TCONS_l2_00015982	TCONS_l2_00015982	chr2	139191948	139192007	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17662_PI429285431	4.824294	P	4.668195	P	1.1142701111613	0	lncRNA	19391-1_{1..472}	lnc-OBFC1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OBFC1-2:2	chr10	105726489	105726960	-	lnc-OBFC1-2	lnc-OBFC1-2:2	XLOC_008935	linc-OBFC1	SLK	NA	chr10:105727470-105736749	inter
CUST_25826_PI429285431	2.3722804	A	1.747035	A	1.54247317518751	0	lncRNA	27347-1_{1..1711}	lnc-HDAC9-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HDAC9-2:2	chr7	 19152378	 19154088	+	lnc-HDAC9-2	lnc-HDAC9-2:2	ENSG00000232821.1	AC003986.6	TWIST1	NA	chr7:19155091-19157295	inter
LNCA_21_P0014845	0.90138733	A	0.91522455	A	0.990454619116633	0	lncRNA	XR_132716	XR_132716	XR_132716	NA	NA	LOC100652916	uncharacterized LOC100652916	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652916 (LOC100652916), miscRNA [XR_132716]"	chr3:1134350-1134291	hs|3p26.3	Agilent_HUMAN_G3V2	XR_132716	XR_132716	chr3	  1134291	  1134350	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009797	0.8999867	A	0.91300833	A	0.991014705093673	0	lncRNA	TCONS_00027642	NA	NA	NA	NA	XLOC_013181	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013181), lincRNA [TCONS_00027642]"	chr19:58783078-58783137	hs|19q13.43	Agilent_HUMAN_G3V2	TCONS_00027642	TCONS_00027642	chr19	 58783078	 58783137	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52001_PI429285431	1.6868443	A	0.894303	A	1.73212290263272	0	lncRNA	55535-1_{1..933}	hg19_lincRNAsTranscripts_TCONS_l2_00016969 range=chr21:15018961-15032639 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016969 range=chr21:15018961-15032639 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr21	 15018961	 15019893	+	NA	NA	NA	NA	POTED	NA	chr21:15008961-15013906	inter
CUST_3321_PI429285431	6.4300456	P	6.6669106	P	0.848587304436955	0	lncRNA	3300-1_{1..582}	"transcript_id ""ENST00000520149.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520149.2"" | genecode_v17"	chr8	134898739	134899320	+	ENSG00000253593.2	ENST00000520149.2	RP11-157E21.1	RP11-157E21.1-001	NA	NA	NA	inter
CUST_933_PI429285431	0.90243876	A	0.904686	A	0.998443544465209	0	lncRNA	923-1_{1..448}	"transcript_id ""ENST00000455541.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455541.1"" | genecode_v17"	chr2	 70316853	 70317300	+	ENSG00000233060.1	ENST00000455541.1	AC016700.2	AC016700.2-001	PCBP1	NA	chr2:70314585-70316335	inter
CUST_6584_PI429285431	0.8979088	A	0.9022876	A	0.996969448545734	0	lncRNA	6532-1_{1..1904}	"transcript_id ""ENST00000596234.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596234.1"" | genecode_v17"	chr19	 54862991	 54864894	-	ENSG00000268802.1	ENST00000596234.1	CTD-2587H19.1	CTD-2587H19.1-001	LAIR1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70chr19:54865235-54874894"	NA	inter
CUST_26066_PI429285431	0.9006529	A	1.3534176	A	0.730641345355444	0	lncRNA	27579-1_{1..601}	lnc-GTF2A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTF2A1-1:1	chr14	 81636453	 81637053	-	lnc-GTF2A1-1	lnc-GTF2A1-1:1	ENSG00000258999.1	RP11-114N19.3	GTF2A1	NA	chr14:81646394-81646758	inter
LNCA_21_P0006240	4.701213	P	5.2782006	P	0.670362057544076	0	lncRNA	TCONS_00016212	NA	NA	NA	NA	XLOC_007604	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007604), lincRNA [TCONS_00016212]"	chr9:138023306-138023443	hs|9q34.3	Agilent_HUMAN_G3V2	TCONS_00016212	TCONS_00016212	chr9	138023306	138023443	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44682_PI429285431	6.0908113	P	6.727508	P	0.643183945053985	0	lncRNA	49242-1_{1..2925}	"gi|337756621|ref|NR_038992.1| Homo sapiens uncharacterized LOC285819 (LOC285819), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|337756621|ref|NR_038992.1| Homo sapiens uncharacterized LOC285819 (LOC285819), non-coding RNA"	Chr6	 26472172	 26475096	-	285819	NR_038992.1	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_BTN1A1:range=chr6:26501515-265094025'pad=0,hg19_refFlat_BTN1A1:range=chr6:26501515-265094025'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20"	NA	inter
LNCA_21_P0012472	0.88975227	A	1.8484384	A	0.514525280916417	0	lncRNA	BC050282	NA	BC050282	NA	Hs.507129	XLOC_l2_010463	NA	ENST00000457449	THC2648194	NA	"BROAD Institute lincRNA (XLOC_l2_010463), lincRNA [TCONS_l2_00019640]"	chr3:184476316-184476257	hs|3q27.1	Agilent_HUMAN_G3V2	BC050282	BC050282	chr3	184476257	184476316	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20352_PI429285431	0.8986701	A	0.9127034	A	0.990320013299632	0	lncRNA	21994-1_{1..582}	lnc-ERCC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ERCC4-1:1	chr16	 14048369	 14048950	+	lnc-ERCC4-1	lnc-ERCC4-1:1	ENSG00000263234.1	CTD-2135D7.3	ERCC4	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80chr16:14038369-14046205"	NA	inter
LNCA_21_P0007705	7.049327	P	7.416324	P	0.775394818733525	0	lncRNA	TCONS_00020776	NA	NA	NA	NA	XLOC_010064	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010064), lincRNA [TCONS_00020776]"	chr12:48672855-48672796	hs|12q13.11	Agilent_HUMAN_G3V2	TCONS_00020776	TCONS_00020776	chr12	 48672796	 48672855	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_623_PI429285431	0.91935384	A	0.927976	A	0.99404139741466	0	lncRNA	615-1_{1..1200}	"transcript_id ""ENST00000588842.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588842.1"" | genecode_v17"	chr2	   305111	   306310	-	ENSG00000235779.2	ENST00000588842.1	AC079779.5	AC079779.5-005	NA	NA	NA	inter
CUST_22778_PI429285431	1.0629723	A	0.8978916	A	1.12122879442422	0	lncRNA	24358-1_{1..572}	lnc-CAPZA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CAPZA3-1:1	chr12	 18890448	 18891019	+	lnc-CAPZA3-1	lnc-CAPZA3-1:1	ENSG00000255648.1	RP11-361I14.2	PLCZ1	NA	chr12:18880448-18890918	inter
CUST_7164_PI429285431	0.8965753	A	0.9081658	A	0.991998263308096	0	lncRNA	7250-1_{1..268}	"transcript_id ""ENST00000516242.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516242.1"" | genecode_v17"	chr1	229546247	229546514	-	ENSG00000252051.1	ENST00000516242.1	RN7SKP276	RN7SKP276-201	NA	NA	NA	inter
LNCA_21_P0014189	2.358134	A	1.3764906	A	1.97471356020118	0	lncRNA	XR_108778	XR_108778	XR_108778	NA	NA	LOC100507042	uncharacterized LOC100507042	NA	THC2644037	NA	"PREDICTED: Homo sapiens hypothetical LOC100507042, transcript variant 2 (LOC100507042), miscRNA [XR_108778]"	chr7:50366178-50366237	hs|7p12.2	Agilent_HUMAN_G3V2	XR_108778	XR_108778	chr7	 50366178	 50366237	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35244_PI429285431	1.2042859	A	1.5913804	A	0.764668049701912	0	lncRNA	36645-1_{1..1265}	n342243|AK026512|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4733|NULL|-1.0852200|-0.2805186	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342243|AK026512|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4733|NULL|-1.0852200|-0.2805186	chrX	103172004	103173268	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011886	0.88172936	A	0.8828789	A	0.999203516951209	0	lncRNA	ENST00000430980	NA	NA	NA	NA	LOC728763	rootletin-like	ENST00000430980	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007829), lincRNA [TCONS_l2_00014324]"	chr2:241888508-241889002	hs|2q37.3	Agilent_HUMAN_G3V2	ENST00000430980	ENST00000430980	chr2	241888508	241889002	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19596_PI429285431	10.680478	P	10.796822	P	0.922522497736059	0	lncRNA	21252-1_{1..662}	lnc-STOM-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STOM-3:1	chr9	124338354	124339015	-	lnc-STOM-3	lnc-STOM-3:1	ENSG00000229854.1	RP11-524G24.2	DAB2IP	NA	chr9:124328354-124348493	inner
CUST_30981_PI429285431	2.189292	A	2.5639057	A	0.771311913659726	0	lncRNA	32769-1_{1..430}	n337133|AB271913|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383707|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383707|1.1013100|-0.3402185	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337133|AB271913|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383707|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383707|1.1013100|-0.3402185	chr8	101300135	101300564	-	NA	NA	NA	NA	RNF19A	NA	chr8:101290135-101322327	inner
CUST_45658_PI429285431	8.301595	P	8.398917	P	0.9347665407518	0	lncRNA	50034-1_{1..540}	"gi|394953901|ref|NR_047467.2| Homo sapiens long intergenic non-protein coding RNA 502 (LINC00502), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|394953901|ref|NR_047467.2| Homo sapiens long intergenic non-protein coding RNA 502 (LINC00502), non-coding RNA"	Chr10	 92805565	 92806104	+	100874184	NR_047467.2	NA	NA	NA	NA	NA	inter
CUST_32454_PI429285431	0.8940704	A	0.9047755	A	0.992607251908674	0	lncRNA	34125-1_{1..1189}	n339054|BC039382|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1483|NULL|-1.0298700|-0.3625823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339054|BC039382|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1483|NULL|-1.0298700|-0.3625823	chr2	186584600	186585788	-	NA	NA	NA	NA	FSIP2	"hg19_refFlat_FSIP2:range=chr2:186603355-1866979535'pad=0,hg19_refFlat_FSIP2:range=chr2:186603355-1866979535'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.20chr2:186603355-186613444"	NA	inner
CUST_52135_PI429285431	5.3710337	P	5.101982	P	1.20501549680602	0	lncRNA	55659-1_{1..1834}	hg19_lincRNAsTranscripts_TCONS_l2_00017893 range=chr22:20386956-20427816 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017893 range=chr22:20386956-20427816 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 20386956	 20388789	-	NA	NA	NA	NA	TMEM191B	NA	chr22:20376956-20380440	inter
CUST_24099_PI429285431	2.3212771	A	2.2949605	A	1.01840866543022	0	lncRNA	25650-1_{1..765}	lnc-FANCL-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FANCL-3:3	chr2	 59615197	 59615961	-	lnc-FANCL-3	lnc-FANCL-3:3	ENSG00000233891.3	AC007131.2	NA	NA	NA	inter
CUST_4932_PI429285431	0.8923228	A	0.9484304	A	0.961855714254289	0	lncRNA	4875-1_{1..369}	"transcript_id ""ENST00000555990.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555990.1"" | genecode_v17"	chr14	 87790097	 87790465	+	ENSG00000258958.1	ENST00000555990.1	RP11-594C13.2	RP11-594C13.2-001	NA	NA	NA	inter
CUST_4357_PI429285431	0.8818268	A	0.88616824	A	0.996995266379592	0	lncRNA	4312-1_{1..554}	"transcript_id ""ENST00000548691.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548691.1"" | genecode_v17"	chr12	 88210263	 88210816	+	ENSG00000257940.1	ENST00000548691.1	RP11-248E9.6	RP11-248E9.6-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.60"	NA	inter
LNCA_21_P0011385	0.8854186	A	1.9582148	A	0.475396702024068	0	lncRNA	TCONS_l2_00009251	NA	NA	NA	NA	XLOC_l2_005020	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005020), lincRNA [TCONS_l2_00009251]"	chr15:85081795-85080636	hs|15q25.2	Agilent_HUMAN_G3V2	TCONS_l2_00009251	TCONS_l2_00009251	chr15	 85080636	 85081795	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11056_PI429285431	1.0574605	A	0.8839553	A	1.12779527204849	0	lncRNA	12606-1_{1..377}	lnc-TPD52-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPD52-1:2	chr8	 81220234	 81220610	-	lnc-TPD52-1	lnc-TPD52-1:2	XLOC_007131	linc-TPD52-2	NA	NA	NA	inter
CUST_382_PI429285431	1.5817682	A	0.88211393	A	1.62411554014333	0	lncRNA	374-1_{1..391}	"transcript_id ""ENST00000457683.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457683.1"" | genecode_v17"	chr1	119870875	119871265	+	ENSG00000232650.1	ENST00000457683.1	RP5-834N19.1	RP5-834N19.1-001	NA	NA	NA	inter
CUST_14120_PI429285431	3.6113243	P	4.4791393	P	0.547976146921146	0	lncRNA	15769-1_{1..738}	lnc-PROM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PROM2-1:1	chr2	 95925268	 95926005	+	lnc-PROM2-1	lnc-PROM2-1:1	XLOC_001574	linc-PROM2-1	PROM2	NA	chr2:95915268-95935721	inter
LNCA_21_P0001610	8.891694	P	8.631207	P	1.19788299696919	0	lncRNA	TCONS_00001775	NA	NA	NA	NA	XLOC_001160	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001160), lincRNA [TCONS_00001775]"	chr1:203395929-203395870	hs|1q32.1	Agilent_HUMAN_G3V2	TCONS_00001775	TCONS_00001775	chr1	203395870	203395929	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30675_PI429285431	0.8974451	A	0.9789132	A	0.945095419263138	0	lncRNA	32457-1_{1..253}	n336147|X92036|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324514|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324514|-1.0500500|-0.2079975	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336147|X92036|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324514|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324514|-1.0500500|-0.2079975	chr14	 22466241	 22466493	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28295_PI429285431	1.4584085	A	1.4582222	A	1.0001291416578	0	lncRNA	29938-1_{1..2491}	n325598|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000126738|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000126738|0.0170657|-0.2847991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325598|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000126738|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000126738|0.0170657|-0.2847991	chr15	 23281070	 23283560	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.74;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00"	NA	inter
CUST_45983_PI429285431	1.7251878	A	1.2970543	A	1.3454917080366	0	lncRNA	50273-1_{1..2628}	"gi|380422398|ref|NR_002814.2| Homo sapiens C-type lectin domain family 2, member D pseudogene (LOC374443), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|380422398|ref|NR_002814.2| Homo sapiens C-type lectin domain family 2, member D pseudogene (LOC374443), transcript variant 2, non-coding RNA"	Chr12	  9800643	  9803270	+	374443	NR_002814.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0013608	5.1751604	P	5.3827405	P	0.865988576984866	0	lncRNA	AK092751	NA	AK092751	NA	Hs.635171	LOC286254	uncharacterized LOC286254	NA	THC2619795	NA	"BROAD Institute lincRNA (XLOC_l2_015075), lincRNA [TCONS_l2_00029134]"	chr9:139443132-139443191	hs|9q34.3	Agilent_HUMAN_G3V2	AK092751	AK092751	chr9	139443132	139443191	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0000945	1.9938705	A	1.9885658	A	1.0036837060776	0	lncRNA	ENST00000414210	XR_109864	XR_109864	NA	NA	XLOC_000041	NA	ENST00000414210	THC2744128	NA	"PREDICTED: Homo sapiens hypothetical LOC100505887, transcript variant 1 (LOC100505887), miscRNA [XR_109864]"	chr1:6789835-6789894	hs|1p36.31	Agilent_HUMAN_G3V2	ENST00000414210	ENST00000414210	chr1	  6789835	  6789894	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16179_PI429285431	1.1677632	A	0.88197714	A	1.21907430181764	0	lncRNA	17884-1_{1..3000}	lnc-MBL2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-MBL2-2:2	chr10	 54789652	 54792651	-	lnc-MBL2-2	lnc-MBL2-2:2	XLOC_008826	linc-MBL2-1	NA	NA	NA	inter
CUST_45_PI429201921	1.8319238	A	1.4551692	A	1.2984177252737	0	lncRNA	46-1_{1..1429}	TC0Y000227.hg.1	TCONS_00017603-XLOC_008273 // Rinn lincRNAs // linc-CD99-7 chrY:+:1836239-1837669 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:+:1836239-1837669	NA	Affy_HUMAN_HTA2.0	TCONS_00017603-XLOC_008273	linc-CD99-7	chrY	  1836239	  1837669	+	NA	NA	NA	NA	LOC338667	NA	chr11:125817319-125821088	Unknown
LNCA_21_P0009005	3.650391	P	3.910754	P	0.834877827362581	0	lncRNA	TCONS_00024566	NA	NA	NA	NA	XLOC_011866	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011866), lincRNA [TCONS_00024566]"	chr16:4230128-4230069	hs|16p13.3	Agilent_HUMAN_G3V2	TCONS_00024566	TCONS_00024566	chr16	  4230069	  4230128	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002705	5.345707	P	5.436409	P	0.939065698684611	0	lncRNA	ENST00000487512	XR_108471	XR_108471	NA	Hs.125983	XLOC_002769	NA	ENST00000487512	THC2604640	NA	"PREDICTED: Homo sapiens hypothetical LOC100506724 (LOC100506724), miscRNA [XR_108471]"	chr3:116651023-116651082	hs|3q13.31	Agilent_HUMAN_G3V2	ENST00000487512	ENST00000487512	chr3	116651023	116651082	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5390_PI429285431	7.9151125	P	8.083177	P	0.890035940642246	0	lncRNA	5324-1_{1..320}	"transcript_id ""ENST00000561649.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561649.1"" | genecode_v17"	chr16	  1344552	  1344871	-	ENSG00000260710.1	ENST00000561649.1	RP11-616M22.7	RP11-616M22.7-001	UBE2I	NA	chr16:1334552-1359167	inter
CUST_45304_PI429285431	4.0432777	P	1.4497516	A	6.03572092002878	0	lncRNA	49747-2_{3001..6000}	"gi|408684415|ref|NR_073201.1| Homo sapiens DENN/MADD domain containing 4C (DENND4C), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|408684415|ref|NR_073201.1| Homo sapiens DENN/MADD domain containing 4C (DENND4C), transcript variant 2, non-coding RNA"	Chr9	 19233763	 19236762	+	55667	NR_073201.2	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_29593_PI429285431	8.555976	P	8.486662	P	1.04921766307683	0	lncRNA	31354-1_{1..356}	n333104|AF317200|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077184|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077184|1.2161500|-0.0722941	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333104|AF317200|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077184|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077184|1.2161500|-0.0722941	chr11	111896149	111896504	+	NA	NA	NA	NA	DIXDC1	NA	chr11:111886149-111893308	inner
CUST_41748_PI429285431	3.5641582	P	3.7840977	P	0.858601441481493	0	lncRNA	43293-1_{1..72}	ENST00000516461 ncrna:miRNA chromosome:GRCh37:5:150748005:150748076:-1 gene:ENSG00000252270 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516461 ncrna:miRNA chromosome:GRCh37:5:150748005:150748076:-1 gene:ENSG00000252270 gene_biotype:miRNA transcript_biotype:miRNA	chr5	150748005	150748076	-	ENSG00000252270	ENST00000516461	NA	NA	NA	NA	NA	inter
CUST_33214_PI429285431	1.5710006	A	1.5249698	A	1.03242057632585	0	lncRNA	34805-1_{1..3000}	n339912|AK128732|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2361|NULL|0.4465520|-0.3595681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339912|AK128732|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2361|NULL|0.4465520|-0.3595681	chr18	 67327072	 67330071	+	NA	NA	NA	NA	DOK6	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr18:67317072-67340649"	NA	inner
CUST_41365_PI429285431	4.706667	P	4.5512624	P	1.11373391815992	0	lncRNA	42445-1_{1..80}	ENST00000582661 ncrna:miRNA chromosome:GRCh37:7:98479273:98479352:1 gene:ENSG00000266019 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582661 ncrna:miRNA chromosome:GRCh37:7:98479273:98479352:1 gene:ENSG00000266019 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 98479273	 98479352	+	ENSG00000266019	ENST00000582661	NA	NA	TRRAP	NA	chr7:98476113-98489352	inner
CUST_23761_PI429285431	0.90956575	A	0.9484092	A	0.97343499799194	0	lncRNA	25324-1_{1..2972}	lnc-UBA5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBA5-1:1	chr3	132467572	132470543	+	lnc-UBA5-1	lnc-UBA5-1:1	ENSG00000248724.1	NPHP3-AS1	NA	"hg19_refFlat_NPHP3:range=chr3:132400754-1324411995'pad=0,hg19_refFlat_NPHP3:range=chr3:132400754-1324411995'pad=0 3'pad=0 strand=- repeatMasking=none,-112.70"	NA	inter
CUST_21707_PI429285431	5.1622972	P	5.4256406	P	0.833154870416207	0	lncRNA	23318-1_{1..3000}	lnc-TRIM44-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TRIM44-2:1	chr11	 35835882	 35838881	+	lnc-TRIM44-2	lnc-TRIM44-2:1	ENSG00000261355.1	RP11-698N11.4	TRIM44	NA	chr11:35825882-35830930	inter
CUST_26492_PI429285431	0.88862276	A	0.9021859	A	0.990642801360275	0	lncRNA	28001-1_{1..2179}	lnc-AC005838.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC005838.1-4:1	chr17	 15369845	 15372023	-	lnc-AC005838.1-4	lnc-AC005838.1-4:1	ENSG00000264762.1	RP11-726O12.3	FAM18B2-CDRT4	"hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00chr17:15359845-15382023"	NA	inter
CUST_21297_PI429285431	1.2018092	A	1.4053049	A	0.868443742641455	0	lncRNA	22922-1_{1..440}	lnc-ADCK3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADCK3-1:1	chr1	227180771	227181210	+	lnc-ADCK3-1	lnc-ADCK3-1:1	ENSG00000233706.1	RP5-1087E8.3	ADCK3	NA	chr1:227170771-227175246	inner
CUST_13160_PI429285431	4.9423304	P	4.5895023	P	1.27706158568719	0	lncRNA	14787-1_{1..1132}	lnc-APITD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APITD1-1:1	chr1	 10519349	 10520480	+	lnc-APITD1-1	lnc-APITD1-1:1	XLOC_000048	linc-PEX14	APITD1-CORT	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr1:10509349-10512060"	NA	inter
CUST_4906_PI429285431	0.90746486	A	0.92247766	A	0.989647875939328	0	lncRNA	4848-1_{1..1817}	"transcript_id ""ENST00000557526.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557526.1"" | genecode_v17"	chr14	 77535523	 77537339	-	ENSG00000258819.1	ENST00000557526.1	RP11-7F17.3	RP11-7F17.3-001	NA	NA	NA	inter
CUST_7644_PI429285431	1.4715677	A	0.9280491	A	1.45752294987275	0	lncRNA	9276-1_{1..439}	lnc-KIAA1919-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1919-3:10	chr6	111897565	111898003	+	lnc-KIAA1919-3	lnc-KIAA1919-3:10	ENSG00000231889	TRAF3IP2-AS1	TRAF3IP2	NA	chr6:111887565-111907793	inter
CUST_22031_PI429285431	2.9481049	A	2.7373557	A	1.15728901486028	0	lncRNA	23640-1_{1..472}	lnc-TSPAN33-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSPAN33-1:1	chr7	128809265	128809736	+	lnc-TSPAN33-1	lnc-TSPAN33-1:1	ENSG00000240685.1	RP11-286H14.6	TSPAN33	NA	chr7:128799265-128809534	inner
CUST_33103_PI429285431	3.966195	P	3.2697868	P	1.62046538122213	0	lncRNA	34705-1_{1..2250}	n339794|AK127627|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2241|NULL|13.3652000|-0.2496331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339794|AK127627|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2241|NULL|13.3652000|-0.2496331	chr18	 10731473	 10733722	-	NA	NA	NA	NA	FAM38B	NA	chr18:10721473-10783583	inner
CUST_2951_PI429285431	0.91606724	A	1.126747	A	0.86412998002865	0	lncRNA	2932-1_{1..2624}	"transcript_id ""ENST00000416982.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416982.1"" | genecode_v17"	chr7	153108319	153110942	-	ENSG00000234722.3	ENST00000416982.1	AC073236.3	AC073236.3-001	NA	NA	NA	inter
CUST_47298_PI429285431	4.683446	P	1.8310652	A	7.2219117949887	0	lncRNA	51364-2_{3001..3142}	"gi|371502113|ref|NR_045796.1| Homo sapiens CSE1 chromosome segregation 1-like (yeast) (CSE1L), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371502113|ref|NR_045796.1| Homo sapiens CSE1 chromosome segregation 1-like (yeast) (CSE1L), transcript variant 3, non-coding RNA"	Chr20	 47665783	 47665924	+	1434	NR_045796.1	NA	NA	NA	NA	NA	inter
CUST_35241_PI429285431	5.779995	P	6.711793	P	0.524204629514463	0	lncRNA	36642-1_{1..639}	n342240|D82345|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4730|NULL|-0.1135790|-0.2942252	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342240|D82345|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4730|NULL|-0.1135790|-0.2942252	chrX	101768610	101769248	-	NA	NA	NA	NA	TMSB15A	NA	chrX:101768610-101771699	inner
CUST_40615_PI429285431	1.8780942	A	1.5803981	A	1.22917991639372	0	lncRNA	41360-2_{3001..6000}	n410096|NR_036527|lncRNA|Homosapiens||RefGeneNoncode|NR_036527||24.8797000|-0.1832447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410096|NR_036527|lncRNA|Homosapiens||RefGeneNoncode|NR_036527||24.8797000|-0.1832447	chr9	100003707	100006706	+	NA	NA	NA	NA	C9orf174	NA	chr9:100069910-100139577	inner
CUST_42694_PI429285431	0.90848184	A	0.92361504	A	0.989565288400696	0	lncRNA	45619-1_{1..61}	ENST00000363202 ncrna:snoRNA chromosome:GRCh37:13:112706392:112706452:1 gene:ENSG00000200072 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363202 ncrna:snoRNA chromosome:GRCh37:13:112706392:112706452:1 gene:ENSG00000200072 gene_biotype:snoRNA transcript_biotype:snoRNA	chr13	112706392	112706452	+	ENSG00000200072	ENST00000363202	NA	NA	NA	NA	NA	inter
LNCA_21_P0007722	2.1266625	A	0.9163315	A	2.31390719061363	0	lncRNA	TCONS_00020826	NA	NA	NA	NA	XLOC_010114	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010114), lincRNA [TCONS_00020826]"	chr12:68099642-68099583	hs|12q15	Agilent_HUMAN_G3V2	TCONS_00020826	TCONS_00020826	chr12	 68099583	 68099642	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4438_PI429285431	1.1323651	A	1.928012	A	0.576084800831803	0	lncRNA	4388-1_{1..544}	"transcript_id ""ENST00000541574.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000541574.1"" | genecode_v17"	chr12	122018697	122019240	+	ENSG00000256742.1	ENST00000541574.1	RP13-941N14.1	RP13-941N14.1-001	KDM2B	"hg19_refFlat_KDM2B:range=chr12:121868091-1220188165'pad=0,hg19_refFlat_KDM2B:range=chr12:121868091-1220188165'pad=0 3'pad=0 strand=- repeatMasking=none,-94.50chr12:122008697-122018920"	NA	inner
CUST_32640_PI429285431	0.91225463	A	0.9268586	A	0.989928361462874	0	lncRNA	34297-1_{1..2914}	n339263|AK098488|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1695|NULL|0.8534360|-0.2518290	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339263|AK098488|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1695|NULL|0.8534360|-0.2518290	chr3	 15354689	 15357602	-	NA	NA	NA	NA	SH3BP5	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0,hg19_refFlat_ST20:range=chr15:80191273-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30chr3:15344689-15367518"	NA	inner
LNCA_21_P0012644	0.89922035	A	1.1589596	A	0.835238865295509	0	lncRNA	TCONS_l2_00020946	NA	NA	NA	NA	XLOC_l2_010984	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010984), lincRNA [TCONS_l2_00020946]"	chr4:187831786-187831845	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_l2_00020946	TCONS_l2_00020946	chr4	187831786	187831845	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004227	4.9252925	P	5.3569922	P	0.741387810269746	0	lncRNA	TCONS_00009873	NA	NA	NA	NA	XLOC_004292	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004292), lincRNA [TCONS_00009873]"	chr5:10332085-10332144	hs|5p15.2	Agilent_HUMAN_G3V2	TCONS_00009873	TCONS_00009873	chr5	 10332085	 10332144	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3650_PI429285431	3.788163	P	4.0568933	P	0.830049742075303	0	lncRNA	3619-1_{1..552}	"transcript_id ""ENST00000414308.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414308.1"" | genecode_v17"	chr10	 33385185	 33385736	-	ENSG00000233387.1	ENST00000414308.1	RP11-342D11.3	RP11-342D11.3-001	NA	NA	NA	inter
CUST_39938_PI429285431	8.581777	P	8.102179	P	1.39435508191025	0	lncRNA	40815-2_{3001..6000}	n406883|NR_024368|lncRNA|Homosapiens||RefGeneNoncode|NR_024368||3.6335100|-0.1460730	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n406883|NR_024368|lncRNA|Homosapiens||RefGeneNoncode|NR_024368||3.6335100|-0.1460730	chr7	128284294	128287293	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-60.00;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-56.00;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80"	NA	inter
CUST_2162_PI429285431	3.1618361	P	3.3132005	P	0.900398525913518	0	lncRNA	2154-1_{1..567}	"transcript_id ""ENST00000445660.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445660.2"" | genecode_v17"	chr5	 54359007	 54359573	+	ENSG00000248029.2	ENST00000445660.2	CTD-2313F11.3	CTD-2313F11.3-001	NA	NA	NA	inter
CUST_45054_PI429285431	0.9150434	A	1.9450673	A	0.489702036215768	0	lncRNA	49546-1_{1..2843}	"gi|195230751|ref|NR_024047.1| Homo sapiens wingless-type MMTV integration site family member 2 (WNT2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|195230751|ref|NR_024047.1| Homo sapiens wingless-type MMTV integration site family member 2 (WNT2), transcript variant 2, non-coding RNA"	Chr7	116916685	116919527	-	7472	NR_024047.1	NA	NA	NA	NA	NA	inter
CUST_32018_PI429285431	6.14144	P	4.5390444	P	3.03647101955811	0	lncRNA	33739-1_{1..3000}	n338583|AK125206|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|989|NULL|-1.0296900|-0.2594946	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338583|AK125206|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|989|NULL|-1.0296900|-0.2594946	chr1	237064219	237067218	+	NA	NA	NA	NA	MTR	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90chr1:237054219-237067281"	NA	inner
CUST_3156_PI429285431	1.3655256	A	0.9047352	A	1.37629563381318	0	lncRNA	3135-1_{1..730}	"transcript_id ""ENST00000523265.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523265.1"" | genecode_v17"	chr8	 64498558	 64499287	+	ENSG00000253583.1	ENST00000523265.1	RP11-573J24.1	RP11-573J24.1-001	NA	NA	NA	inter
CUST_42410_PI429285431	2.5279195	A	2.636527	A	0.927482843345193	0	lncRNA	45117-1_{1..128}	ENST00000391200 ncrna:snoRNA chromosome:GRCh37:12:109171920:109172047:-1 gene:ENSG00000212502 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391200 ncrna:snoRNA chromosome:GRCh37:12:109171920:109172047:-1 gene:ENSG00000212502 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	109171920	109172047	-	ENSG00000212502	ENST00000391200	NA	NA	SSH1	NA	chr12:109176466-109182047	inter
CUST_43341_PI429285431	4.870798	P	4.7893004	P	1.05811585546629	0	lncRNA	48166-2_{3001..4273}	"gi|256000778|ref|NR_028327.1| Homo sapiens uncharacterized LOC100133331 (LOC100133331), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|256000778|ref|NR_028327.1| Homo sapiens uncharacterized LOC100133331 (LOC100133331), non-coding RNA"	Chr1	   664139	   665411	-	100133331	NR_028327.1	NA	NA	NA	NA	NA	inter
CUST_25215_PI429285431	0.90243924	A	1.1255894	A	0.856692782989678	0	lncRNA	26746-1_{1..562}	lnc-LRRC57-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC57-2:2	chr15	 42861799	 42862360	-	lnc-LRRC57-2	lnc-LRRC57-2:2	ENSG00000261822.1	RP11-265N6.2	STARD9	"hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30chr15:42867857-42872192"	NA	inner
CUST_29688_PI429285431	2.54806	A	3.0352645	A	0.713406121373674	0	lncRNA	31450-1_{1..437}	n333345|AY255611|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085532|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085532|2.8701000|-0.0125340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333345|AY255611|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085532|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085532|2.8701000|-0.0125340	chr2	 26533770	 26534206	-	NA	NA	NA	NA	GPR113	NA	chr2:26531041-26544207	inner
CUST_15076_PI429285431	7.9926944	P	8.239658	P	0.842668090220537	0	lncRNA	16740-1_{1..303}	lnc-ASAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASAP1-1:1	chr8	131455706	131456008	-	lnc-ASAP1-1	lnc-ASAP1-1:1	XLOC_007222	linc-ASAP1-2	NA	NA	NA	inner
CUST_46828_PI429285431	9.674552	P	9.897109	P	0.857045082231376	0	lncRNA	50967-2_{3001..3787}	"gi|222144295|ref|NR_026697.1| Homo sapiens family with sequence similarity 134, member C (FAM134C), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|222144295|ref|NR_026697.1| Homo sapiens family with sequence similarity 134, member C (FAM134C), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_026697.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60"	NA	Unknown
CUST_38495_PI429285431	6.0741115	P	6.1765366	P	0.931465926033646	0	lncRNA	39509-3_{6001..6938}	n383026|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fkg.2||2.2495400|-0.1421932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383026|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fkg.2||2.2495400|-0.1421932	chr16	 87737748	 87738685	-	NA	NA	NA	NA	JPH3	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60chr16:87721748-87731762"	NA	inner
CUST_8499_PI429285431	5.399452	P	4.870798	P	1.44258267232037	0	lncRNA	10063-1_{1..3000}	lnc-MAP1LC3B-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MAP1LC3B-6:1	chr16	 87096358	 87099357	+	lnc-MAP1LC3B-6	lnc-MAP1LC3B-6:1	ENSG00000232190	AC106745.1	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
LNCA_21_P0014567	4.8869586	P	4.9817476	P	0.936409191061391	0	lncRNA	XR_110327	XR_110327	XR_110327	NA	NA	LOC100507594	uncharacterized LOC100507594	NA	THC2672705	NA	"PREDICTED: Homo sapiens hypothetical LOC100507594 (LOC100507594), miscRNA [XR_110327]"	chr12:90506007-90506066	hs|12q21.33	Agilent_HUMAN_G3V2	XR_110327	XR_110327	chr12	 90506007	 90506066	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38057_PI429285431	0.89330333	A	1.3079779	A	0.750188696288325	0	lncRNA	39134-1_{1..593}	n377628|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030017||-1.3416400|-0.2767935	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377628|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030017||-1.3416400|-0.2767935	chr6	  2476463	  2477055	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13350_PI429285431	6.1563663	P	6.4557137	P	0.812619900094908	0	lncRNA	14987-1_{1..538}	lnc-TRIM7-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIM7-3:1	chr5	180644520	180645057	-	lnc-TRIM7-3	lnc-TRIM7-3:1	XLOC_005115	linc-TRIM7-1	TRIM41	NA	chr5:180650306-180654800	inter
CUST_16486_PI429285431	0.89413625	A	0.89529204	A	0.999199188241207	0	lncRNA	18184-1_{1..638}	lnc-AL445989.1-19:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL445989.1-19:4	chr13	 68617559	 68618196	+	lnc-AL445989.1-19	lnc-AL445989.1-19:4	XLOC_010419	linc-C13orf34-6	NA	NA	NA	inter
CUST_37410_PI429285431	3.707044	P	3.5960224	P	1.07999272934041	0	lncRNA	38516-1_{1..1680}	n345865|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1414|NULL|-1.6421500|-0.2428442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n345865|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1414|NULL|-1.6421500|-0.2428442	chr22	 28071551	 28073230	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40300_PI429285431	5.4483776	P	5.775344	P	0.797211043166449	0	lncRNA	41104-1_{1..715}	n408307|NR_028595|lncRNA|Homosapiens||RefGeneNoncode|NR_028595||2.1831300|-0.1997950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408307|NR_028595|lncRNA|Homosapiens||RefGeneNoncode|NR_028595||2.1831300|-0.1997950	chr6	109615505	109616219	+	NA	NA	NA	NA	FLJ37396	NA	chr6:109605505-109608597	inter
CUST_48883_PI429285431	2.7091768	A	1.5446869	A	2.24153946500823	0	lncRNA	52720-1_{1..415}	hg19_lincRNAsTranscripts_TCONS_l2_00019357 range=chr3:75379075-75388094 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019357 range=chr3:75379075-75388094 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 75379075	 75379489	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003866	6.0201836	P	6.0223174	P	0.99852205578297	0	lncRNA	TCONS_00008949	NA	NA	NA	NA	XLOC_003803	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003803), lincRNA [TCONS_00008949]"	chr4:184434454-184434513	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00008949	TCONS_00008949	chr4	184434454	184434513	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10909_PI429285431	1.9540702	A	0.8881442	A	2.09351317885108	0	lncRNA	12453-1_{1..209}	lnc-KCNC2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNC2-2:1	chr12	 74796281	 74796489	-	lnc-KCNC2-2	lnc-KCNC2-2:1	XLOC_010130	linc-ZFC3H1-1	NA	NA	NA	inter
CUST_28871_PI429285431	7.2397447	P	7.2271113	P	1.00879525857277	0	lncRNA	30585-1_{1..583}	n326292|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098603|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098603|-1.2669700|-0.5135597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326292|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098603|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098603|-1.2669700|-0.5135597	chr1	190094515	190095097	-	NA	NA	NA	NA	FAM5C	NA	chr1:190084515-190135982	inner
CUST_37525_PI429285431	3.911396	P	4.624746	P	0.609902273972043	0	lncRNA	38629-1_{1..1154}	n345999|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1548|NULL|-1.2632200|-0.2966423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345999|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1548|NULL|-1.2632200|-0.2966423	chr14	 75981717	 75982870	+	NA	NA	NA	NA	BATF	NA	chr14:75988784-75994051	inter
CUST_35291_PI429285431	7.985524	P	8.444321	P	0.727592713369004	0	lncRNA	36694-1_{1..986}	n342311|AB048287|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4803|NULL|-0.7567010|-0.1348204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342311|AB048287|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4803|NULL|-0.7567010|-0.1348204	chr1	153122057	153123042	-	NA	NA	NA	NA	SPRR2G	NA	chr1:153122058-153123427	inner
CUST_51829_PI429285431	0.8906286	A	1.0216655	A	0.913174893319456	0	lncRNA	55382-1_{1..1700}	hg19_lincRNAsTranscripts_TCONS_l2_00013074 range=chr19:36806341-36814003 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013074 range=chr19:36806341-36814003 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 36806341	 36808040	-	NA	NA	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00"	NA	inter
CUST_40203_PI429285431	6.9948263	P	7.474862	P	0.716959882362062	0	lncRNA	41034-1_{1..1493}	n408035|NR_027812|lncRNA|Homosapiens||RefGeneNoncode|NR_027812||6.1625800|-0.0472086	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408035|NR_027812|lncRNA|Homosapiens||RefGeneNoncode|NR_027812||6.1625800|-0.0472086	chr9	130882971	130884463	-	NA	NA	NA	NA	PTGES2	NA	chr9:130882972-130890712	inner
CUST_32768_PI429285431	2.3822422	A	3.1256073	P	0.597344414521212	0	lncRNA	34404-1_{1..572}	n339407|AF147393|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1839|NULL|-1.0138600|-0.3830114	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339407|AF147393|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1839|NULL|-1.0138600|-0.3830114	chr3	101547087	101547658	+	NA	NA	NA	NA	FAM55C	NA	chr3:101537087-101547075	inner
CUST_29634_PI429285431	0.8820246	A	0.8842763	A	0.998440457845238	0	lncRNA	31395-1_{1..522}	n333196|AF446131|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079775|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079775|-1.2845900|-0.2768150	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333196|AF446131|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079775|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079775|-1.2845900|-0.2768150	chr12	117889506	117890027	-	NA	NA	NA	NA	KSR2	NA	chr12:117890817-117900028	inter
CUST_20714_PI429285431	1.0508423	A	1.1784526	A	0.915346387605543	0	lncRNA	22349-1_{1..803}	lnc-RDX-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RDX-2:2	chr11	109454253	109455055	-	lnc-RDX-2	lnc-RDX-2:2	ENSG00000255028.1	RP11-708B6.2	NA	NA	NA	inter
CUST_18698_PI429285431	0.9016548	A	2.5405717	A	0.321097447098055	0	lncRNA	20396-2_{3001..4647}	lnc-XDH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XDH-1:1	chr2	 31808690	 31810336	-	lnc-XDH-1	lnc-XDH-1:1	ENSG00000049319	SRD5A2	SRD5A2	NA	chr2:31795690-31806040	inner
CUST_49466_PI429285431	0.8806829	A	0.88101786	A	0.999767850371296	0	lncRNA	53261-1_{1..739}	hg19_lincRNAsTranscripts_TCONS_l2_00024960 range=chr6:144550948-144605936 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024960 range=chr6:144550948-144605936 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	144550948	144551686	-	NA	NA	NA	NA	UTRN	NA	chr6:144612873-144615936	inter
CUST_19369_PI429285431	0.89910877	A	0.9032677	A	0.997121400532021	0	lncRNA	21032-1_{1..3000}	lnc-SEC16B.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC16B.1-2:1	chr1	178007032	178010031	-	lnc-SEC16B.1-2	lnc-SEC16B.1-2:1	ENSG00000254154.3	SEC16B	NA	NA	NA	inter
CUST_13397_PI429285431	1.1002963	A	0.89068824	A	1.15637398667168	0	lncRNA	15034-1_{1..582}	lnc-NTSR2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTSR2-5:1	chr2	 13146996	 13147577	-	lnc-NTSR2-5	lnc-NTSR2-5:1	XLOC_001992	linc-NTSR2-2	NA	NA	NA	inter
CUST_43187_PI429285431	1.7741747	A	1.0236615	A	1.68239118954103	0	lncRNA	48001-1_{1..282}	ENST00000599498 havana:sense_intronic chromosome:GRCh37:18:45404666:45408815:-1 gene:ENSG00000269365 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000599498 havana:sense_intronic chromosome:GRCh37:18:45404666:45408815:-1 gene:ENSG00000269365 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr18	 45404666	 45404947	-	ENSG00000269365	ENST00000599498	NA	NA	SMAD2	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10chr18:45394666-45418815"	NA	inner
CUST_44878_PI429285431	2.6007273	A	1.712208	A	1.85127510509778	0	lncRNA	49402-1_{1..767}	"gi|310119911|ref|XR_108739.1| PREDICTED: Homo sapiens uncharacterized LOC100505921 (LOC100505921), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310119911|ref|XR_108739.1| PREDICTED: Homo sapiens uncharacterized LOC100505921 (LOC100505921), misc_RNA"	Chr7	  7983608	  7984374	-	100505921	XR_108739.2	NA	NA	NA	NA	NA	inter
CUST_5726_PI429285431	2.9362044	A	3.3249605	P	0.763787862970906	0	lncRNA	5650-1_{1..2607}	"transcript_id ""ENST00000577346.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577346.1"" | genecode_v17"	chr17	 11191522	 11194128	+	ENSG00000264727.1	ENST00000577346.1	RP11-680C21.1	RP11-680C21.1-001	SHISA6	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60chr17:11181522-11204128"	NA	inner
LNCA_21_P0014648	0.8880087	A	0.8893406	A	0.999077223290741	0	lncRNA	XR_110893	XR_110893	XR_110893	NA	NA	LOC100506113	uncharacterized LOC100506113	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506113 (LOC100506113), miscRNA [XR_110893]"	chr11:75524483-75524424	hs|11q13.5	Agilent_HUMAN_G3V2	XR_110893	XR_110893	chr11	 75524424	 75524483	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21294_PI429285431	0.90045047	A	0.9031898	A	0.998103042636106	0	lncRNA	22919-1_{1..856}	lnc-AC091801.1.1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC091801.1.1-7:1	chr7	  3683098	  3683953	-	lnc-AC091801.1.1-7	lnc-AC091801.1.1-7:1	ENSG00000236510.1	AC011284.3	SDK1	NA	chr7:3673098-3693416	inner
CUST_34011_PI429285431	0.93363035	A	0.9055172	A	1.01967765277614	0	lncRNA	35547-2_{3001..6000}	n340827|BX647262|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3291|NULL|-0.6889870|-0.2464559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340827|BX647262|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3291|NULL|-0.6889870|-0.2464559	chr6	  3908153	  3911152	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002243	0.88433874	A	2.373983	A	0.356100345360939	0	lncRNA	TCONS_00003744	NA	NA	NA	NA	XLOC_001539	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001539), lincRNA [TCONS_00003744]"	chr2:75575038-75575097	hs|2p12	Agilent_HUMAN_G3V2	TCONS_00003744	TCONS_00003744	chr2	 75575038	 75575097	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014619	4.3305407	P	4.5493784	P	0.859257414068008	0	lncRNA	XR_110584	XR_110584	XR_110584	NA	Hs.670727	LOC100507333	uncharacterized LOC100507333	NA	THC2614379	NA	"PREDICTED: Homo sapiens hypothetical LOC100507333 (LOC100507333), miscRNA [XR_110584]"	chr8:145720183-145720124	hs|8q24.3	Agilent_HUMAN_G3V2	XR_110584	XR_110584	chr8	145720124	145720183	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005090	0.8826262	A	0.884746	A	0.998531745548453	0	lncRNA	TCONS_00012366	NA	NA	NA	NA	XLOC_005931	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005931), lincRNA [TCONS_00012366]"	chr6:169327614-169327555	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012366	TCONS_00012366	chr6	169327555	169327614	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7924_PI429285431	0.9083594	A	2.312022	A	0.377968366396042	0	lncRNA	9535-1_{1..2408}	lnc-RADIL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RADIL-1:1	chr7	  4810155	  4812562	-	lnc-RADIL-1	lnc-RADIL-1:1	ENSG00000251104	ENST00000515163	FOXK1	NA	chr7:4800155-4811074	inner
CUST_4732_PI429285431	2.4665413	A	2.1862223	A	1.21446338950675	0	lncRNA	4676-2_{3001..3829}	"transcript_id ""ENST00000556738.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556738.1"" | genecode_v17"	chr14	 20731639	 20732467	-	ENSG00000258768.2	ENST00000556738.1	CTD-2292M16.8	CTD-2292M16.8-001	NA	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.52;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90"	NA	inter
CUST_32297_PI429285431	2.4546788	A	1.6598222	A	1.73490492085881	0	lncRNA	33980-1_{1..712}	n338873|AF090093|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1299|NULL|-1.2891400|-0.5356273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338873|AF090093|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1299|NULL|-1.2891400|-0.5356273	chr2	 70437336	 70438047	+	NA	NA	NA	NA	TIA1	NA	chr2:70436576-70448027	inner
CUST_29211_PI429285431	4.7318316	P	4.8900266	P	0.896145565032597	0	lncRNA	30958-1_{1..371}	n326732|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000004637|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000004637|-0.9628890|-0.1366037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326732|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000004637|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000004637|-0.9628890|-0.1366037	chr1	  2347278	  2347648	+	NA	NA	NA	NA	PEX10	NA	chr1:2337278-2344010	inter
CUST_34675_PI429285431	1.3148353	A	1.5708778	A	0.837381818919085	0	lncRNA	36128-1_{1..268}	n341580|U29108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4051|NULL|-0.6880490|-0.2296706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341580|U29108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4051|NULL|-0.6880490|-0.2296706	chr8	106701871	106702138	-	NA	NA	NA	NA	ZFPM2	NA	chr8:106691871-106712134	inner
LNCA_21_P0008097	6.364734	P	6.9676986	P	0.658399616252871	0	lncRNA	TCONS_00021863	NA	NA	NA	NA	XLOC_010457	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010457), lincRNA [TCONS_00021863]"	chr13:83229743-83229802	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00021863	TCONS_00021863	chr13	 83229743	 83229802	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36565_PI429285431	4.2753563	P	4.67019	P	0.760577043569593	0	lncRNA	37761-1_{1..2102}	n345063|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_612|NULL|-1.3194000|-0.2964023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345063|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_612|NULL|-1.3194000|-0.2964023	chrX	  6771240	  6773341	+	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30"	NA	inter
CUST_17994_PI429285431	9.632603	P	9.635482	P	0.998006419094609	0	lncRNA	19728-1_{1..204}	lnc-MCCC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MCCC1-1:1	chr3	182703609	182703812	-	lnc-MCCC1-1	lnc-MCCC1-1:1	XLOC_003351	linc-DCUN1D1	DCUN1D1	NA	chr3:182693609-182698326	inter
LNCA_21_P0007036	1.8455496	A	1.6195059	A	1.16962309202083	0	lncRNA	TCONS_00018647	NA	NA	NA	NA	XLOC_008998	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008998), lincRNA [TCONS_00018647]"	chr10:133454470-133454228	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_00018647	TCONS_00018647	chr10	133454228	133454470	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013509	0.9066258	A	0.92722744	A	0.985821506476916	0	lncRNA	TCONS_l2_00028126	NA	NA	NA	NA	XLOC_l2_014458	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014458), lincRNA [TCONS_l2_00028126]"	chr8:23569267-23569208	hs|8p21.2	Agilent_HUMAN_G3V2	TCONS_l2_00028126	TCONS_l2_00028126	chr8	 23569208	 23569267	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23143_PI429285431	1.5971876	A	1.4538393	A	1.10446545852313	0	lncRNA	24714-1_{1..583}	lnc-C8orf56-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C8orf56-2:1	chr8	104241296	104241878	-	lnc-C8orf56-2	lnc-C8orf56-2:1	ENSG00000253851.1	RP11-318M2.3	BAALC	NA	chr8:104231296-104242533	inner
CUST_370_PI429285431	1.530391	A	2.7512438	A	0.429029037356638	0	lncRNA	362-1_{1..621}	"transcript_id ""ENST00000443219.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443219.1"" | genecode_v17"	chr1	116995268	116995888	-	ENSG00000233154.1	ENST00000443219.1	RP4-655J12.4	RP4-655J12.4-002	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70"	NA	inter
CUST_5400_PI429285431	10.55743	P	10.998362	P	0.73665856376081	0	lncRNA	5334-1_{1..274}	"transcript_id ""ENST00000567888.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567888.1"" | genecode_v17"	chr16	  2318624	  2318897	+	ENSG00000260778.1	ENST00000567888.1	hsa-mir-940	hsa-mir-940.1-003	ABCA3	NA	chr16:2325879-2333040	inter
LNCA_21_P0009950	9.5608	P	9.482734	P	1.05560200791204	0	lncRNA	TCONS_00028131	NA	NA	NA	NA	XLOC_013489	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013489), lincRNA [TCONS_00028131]"	chr20:23161800-23167042	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028131	TCONS_00028131	chr20	 23161800	 23167042	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013276	0.9026338	A	0.9173499	A	0.989851424653287	0	lncRNA	TCONS_l2_00026263	NA	NA	NA	NA	XLOC_l2_013645	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013645), lincRNA [TCONS_l2_00026263]"	chr7:149250426-149250485	hs|7q36.1	Agilent_HUMAN_G3V2	TCONS_l2_00026263	TCONS_l2_00026263	chr7	149250426	149250485	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19588_PI429285431	0.8892554	A	0.90154904	A	0.991514901481947	0	lncRNA	21244-1_{1..555}	lnc-OR6C70-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR6C70-1:1	chr12	 55979199	 55979753	-	lnc-OR6C70-1	lnc-OR6C70-1:1	ENSG00000258763.1	RP11-110A12.2	NA	"hg19_refFlat_OR6C2:range=chr12:55845998-558469365'pad=0,hg19_refFlat_OR6C2:range=chr12:55845998-558469365'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.70;hg19_refFlat_OR6C68:range=chr12:55886162-558871005'pad=0,hg19_refFlat_OR6C68:range=chr12:55886162-558871005'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80"	NA	inter
CUST_35457_PI429285431	8.080519	P	5.3521748	P	6.62694616724865	0	lncRNA	36861-2_{3001..6000}	n342531|D83077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5027|NULL|21.1024000|-0.3938899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n342531|D83077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5027|NULL|21.1024000|-0.3938899	chr21	 38458246	 38461245	+	NA	NA	NA	NA	TTC3	NA	chr21:38445571-38575408	inner
CUST_22567_PI429285431	6.5774145	P	6.7205896	P	0.905524072826756	0	lncRNA	24154-1_{1..590}	lnc-DDX19A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DDX19A-1:1	chr16	 70433026	 70433615	+	lnc-DDX19A-1	lnc-DDX19A-1:1	ENSG00000260111.1	RP11-529K1.4	ST3GAL2	NA	chr16:70423026-70443405	inner
CUST_7589_PI429285431	2.316432	A	3.266966	P	0.517440900588043	0	lncRNA	9224-1_{1..2406}	lnc-C2orf65-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf65-1:1	chr2	 74906945	 74909350	-	lnc-C2orf65-1	lnc-C2orf65-1:1	ENSG00000245942	ENST00000499101	SEMA4F	"hg19_refFlat_SEMA4F:range=chr2:74881504-749073365'pad=0,hg19_refFlat_SEMA4F:range=chr2:74881504-749073365'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.00chr2:74896945-74909185"	NA	inter
CUST_4629_PI429285431	0.8861748	A	0.89315826	A	0.995171131047734	0	lncRNA	4575-1_{1..1020}	"transcript_id ""ENST00000451744.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451744.1"" | genecode_v17"	chr13	 54700997	 54702016	-	ENSG00000234787.2	ENST00000451744.1	LINC00458	LINC00458-002	NA	NA	NA	inter
CUST_5839_PI429285431	0.91055244	A	0.926487	A	0.989015776675555	0	lncRNA	5768-1_{1..294}	"transcript_id ""ENST00000582518.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000582518.1"" | genecode_v17"	chr17	 37182968	 37183261	-	ENSG00000266013.1	ENST00000582518.1	CTD-2206N4.2	CTD-2206N4.2-001	NA	NA	NA	inter
CUST_38029_PI429285431	0.89852685	A	0.914251	A	0.989160030297772	0	lncRNA	39113-1_{1..1719}	n377602|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029975||0.6791850|-0.2713670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377602|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029975||0.6791850|-0.2713670	chr6	  2547502	  2549220	+	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10"	NA	inter
CUST_25449_PI429285431	3.0753171	P	3.7115674	P	0.643382990402839	0	lncRNA	26979-1_{1..612}	lnc-RPS21-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS21-1:3	chr20	 60931248	 60931859	+	lnc-RPS21-1	lnc-RPS21-1:3	ENSG00000228812.2	RP11-157P1.5	LAMA5	"hg19_refFlat_LAMA5:range=chr20:60884392-609423015'pad=0,hg19_refFlat_LAMA5:range=chr20:60884392-609423015'pad=0 3'pad=0 strand=- repeatMasking=none,-98.90chr20:60921248-60941536"	NA	inner
CUST_36795_PI429285431	0.8977882	A	0.90410125	A	0.995633687373387	0	lncRNA	37967-1_{1..754}	n345274|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_823|NULL|-1.3532900|-0.3513554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345274|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_823|NULL|-1.3532900|-0.3513554	chr14	 76701194	 76701947	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50389_PI429285431	3.2881002	P	2.9913714	P	1.22835605050926	0	lncRNA	54096-1_{1..758}	hg19_lincRNAsTranscripts_TCONS_l2_00030372 range=chrX:136007491-136104280 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030372 range=chrX:136007491-136104280 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	136007491	136008248	+	NA	NA	NA	NA	GPR101	NA	chrX:136112307-136113833	inter
CUST_1286_PI429285431	4.20112	P	4.589563	P	0.763953641548371	0	lncRNA	1276-1_{1..357}	"transcript_id ""ENST00000418972.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418972.1"" | genecode_v17"	chr3	  2004065	  2004421	-	ENSG00000225044.1	ENST00000418972.1	RP11-204C23.1	RP11-204C23.1-001	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80"	NA	inter
CUST_39781_PI429285431	1.1209433	A	1.5665925	A	0.734253834560599	0	lncRNA	40695-2_{3001..3670}	n406099|NR_003366|lncRNA|Homosapiens||RefGeneNoncode|NR_003366||10.3075000|-0.2313750	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406099|NR_003366|lncRNA|Homosapiens||RefGeneNoncode|NR_003366||10.3075000|-0.2313750	chr2	 95429672	 95430341	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42064_PI429285431	1.0136341	A	0.9120772	A	1.0729307028041	0	lncRNA	43974-1_{1..93}	ENST00000583455 ncrna:miRNA chromosome:GRCh37:4:160049954:160050046:-1 gene:ENSG00000264105 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583455 ncrna:miRNA chromosome:GRCh37:4:160049954:160050046:-1 gene:ENSG00000264105 gene_biotype:miRNA transcript_biotype:miRNA	chr4	160049954	160050046	-	ENSG00000264105	ENST00000583455	NA	NA	NA	NA	NA	inter
LNCA_21_P0007139	1.7834032	A	2.564747	A	0.581824599549432	0	lncRNA	ENST00000455154	NA	NA	NA	NA	XLOC_009029	NA	ENST00000455154	NA	NA	"BROAD Institute lincRNA (XLOC_009029), lincRNA [TCONS_00019136]"	chr11:3211100-3211159	hs|11p15.4	Agilent_HUMAN_G3V2	ENST00000455154	ENST00000455154	chr11	  3211100	  3211159	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010904	1.2774621	A	1.3017607	A	0.983298535979951	0	lncRNA	TCONS_l2_00003767	NA	NA	NA	NA	XLOC_l2_002110	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002110), lincRNA [TCONS_l2_00003767]"	chr10:114073833-114073774	hs|10q25.2	Agilent_HUMAN_G3V2	TCONS_l2_00003767	TCONS_l2_00003767	chr10	114073774	114073833	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010373	4.809256	P	4.912083	P	0.931206478259437	0	lncRNA	ENST00000440477	NA	NA	NA	NA	XLOC_014330	NA	ENST00000440477	NA	NA	"BROAD Institute lincRNA (XLOC_014330), lincRNA [TCONS_00029462]"	chr22:27853355-27853296	hs|22q12.1	Agilent_HUMAN_G3V2	ENST00000440477	ENST00000440477	chr22	 27853296	 27853355	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37759_PI429285431	0.88095194	A	0.88653713	A	0.996136125346779	0	lncRNA	38856-1_{1..864}	n346267|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1817|NULL|-1.5157500|-0.1821108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346267|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1817|NULL|-1.5157500|-0.1821108	chr4	182901207	182902070	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3949_PI429285431	3.643699	P	4.015779	P	0.772667702664858	0	lncRNA	3919-1_{1..562}	"transcript_id ""ENST00000528978.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000528978.1"" | genecode_v17"	chr11	 58265388	 58265949	-	ENSG00000255299.1	ENST00000528978.1	RP11-655C2.3	RP11-655C2.3-003	OR5B21	NA	chr11:58274649-58275578	inter
CUST_20123_PI429285431	7.528382	P	7.6412816	P	0.92472762949836	0	lncRNA	21771-1_{1..1184}	lnc-MRPS25-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPS25-1:1	chr3	 14989520	 14990703	-	lnc-MRPS25-1	lnc-MRPS25-1:1	ENSG00000225733.1	FGD5-AS1	NR2C2	"hg19_refFlat_FGD5:range=chr3:14860579-149746745'pad=0,hg19_refFlat_FGD5:range=chr3:14860579-149746745'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.70chr3:14989236-14999931"	NA	inner
CUST_30372_PI429285431	8.205881	P	8.585279	P	0.76875830704309	0	lncRNA	32148-1_{1..218}	n335471|AY820829|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257852|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257852|1.1846100|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335471|AY820829|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257852|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257852|1.1846100|-1.0000000	chr19	 41848070	 41848287	-	NA	NA	NA	NA	B9D2	NA	chr19:41860322-41860788	inner
CUST_192_PI429285431	0.88536906	A	0.88331825	A	1.00142252399812	0	lncRNA	182-1_{1..425}	"transcript_id ""ENST00000605846.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605846.1"" | genecode_v17"	chr1	 28573655	 28574079	+	ENSG00000271398.1	ENST00000605846.1	RP5-1092A3.5	RP5-1092A3.5-001	ATPIF1	NA	chr1:28563655-28564616	inter
CUST_10068_PI429285431	0.8928279	A	0.9062716	A	0.990724819576808	0	lncRNA	11592-1_{1..2160}	lnc-DBT-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-DBT-1:2	chr1	100731560	100733719	-	lnc-DBT-1	lnc-DBT-1:2	XLOC_000939	linc-DBT-3	RTCD1	NA	chr1:100731714-100741675	inter
CUST_5822_PI429285431	2.9730744	A	3.4237058	P	0.731722537226858	0	lncRNA	5749-1_{1..540}	"transcript_id ""ENST00000585387.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585387.1"" | genecode_v17"	chr17	 33640683	 33641222	+	ENSG00000267364.1	ENST00000585387.1	RP11-47L3.1	RP11-47L3.1-001	NA	NA	NA	inter
CUST_22231_PI429285431	0.88746905	A	1.3332158	A	0.734204188559178	0	lncRNA	23831-1_{1..531}	lnc-HCN4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HCN4-1:1	chr15	 73548121	 73548651	-	lnc-HCN4-1	lnc-HCN4-1:1	ENSG00000259528.1	RP11-272D12.2	NEO1	NA	chr15:73538121-73558450	inner
LNCA_21_P0014251	0.88233376	A	1.8753016	A	0.502443110354592	0	lncRNA	XR_109019	XR_109019	XR_109019	NA	NA	LOC100507531	uncharacterized LOC100507531	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507531 (LOC100507531), miscRNA [XR_109019]"	chr10:25972255-25972314	hs|10p12.1	Agilent_HUMAN_G3V2	XR_109019	XR_109019	chr10	 25972255	 25972314	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27329_PI429285431	0.87775975	A	1.578053	A	0.615447094850938	0	lncRNA	28889-1_{1..397}	n324484|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041135|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041135|-0.2763590|-0.3512906	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324484|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041135|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041135|-0.2763590|-0.3512906	chr6	 71161310	 71161706	+	NA	NA	NA	NA	FAM135A	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20chr6:71151310-71175841"	NA	inner
CUST_50088_PI429285431	0.9030156	A	0.8944543	A	1.00595188344579	0	lncRNA	53823-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00028401 range=chr8:126957007-126967898 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028401 range=chr8:126957007-126967898 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	126957007	126960006	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.10"	NA	inter
CUST_30860_PI429285431	0.88114494	A	0.88633317	A	0.996410251611301	0	lncRNA	32648-1_{1..270}	n336857|AY566846|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331938_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331938_08|-1.3512600|-0.2792157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336857|AY566846|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331938_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331938_08|-1.3512600|-0.2792157	chr6	   965549	   965818	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43194_PI429285431	4.9177623	P	5.1071506	P	0.876977479309704	0	lncRNA	48008-1_{1..768}	ENST00000585369 havana:sense_intronic chromosome:GRCh37:17:75465150:75467127:1 gene:ENSG00000267263 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585369 havana:sense_intronic chromosome:GRCh37:17:75465150:75467127:1 gene:ENSG00000267263 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr17	 75465150	 75465917	+	ENSG00000267263	ENST00000585369	NA	NA	9-Sep	NA	chr17:75455150-75477127	inner
CUST_40220_PI429285431	5.979554	P	5.9118733	P	1.04803049775148	0	lncRNA	41044-1_{1..3000}	n408051|NR_027856|lncRNA|Homosapiens||RefGeneNoncode|NR_027856||3.2288500|-0.3474185	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408051|NR_027856|lncRNA|Homosapiens||RefGeneNoncode|NR_027856||3.2288500|-0.3474185	chr2	201717731	201720730	-	NA	NA	NA	NA	CLK1	NA	chr2:201709028-201729467	inner
CUST_33869_PI429285431	0.89873886	A	0.8941614	A	1.00317789232051	0	lncRNA	35413-1_{1..942}	n340657|AJ406937|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3119|NULL|1.3735900|-0.1557043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340657|AJ406937|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3119|NULL|1.3735900|-0.1557043	chr17	 39305175	 39306116	-	NA	NA	NA	NA	KRTAP4-5	NA	chr17:39305176-39306054	inner
CUST_3436_PI429285431	7.025304	P	6.8563647	P	1.12423162182421	0	lncRNA	3407-1_{1..648}	"transcript_id ""ENST00000423681.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423681.1"" | genecode_v17"	chr9	 76986447	 76987094	+	ENSG00000227809.1	ENST00000423681.1	RP11-171A24.2	RP11-171A24.2-001	NA	NA	NA	inter
CUST_44996_PI429285431	8.324531	P	8.428317	P	0.930587684790957	0	lncRNA	49505-1_{1..1090}	"gi|334358868|ref|NR_038344.1| Homo sapiens MAGI2 antisense RNA 3 (MAGI2-AS3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|334358868|ref|NR_038344.1| Homo sapiens MAGI2 antisense RNA 3 (MAGI2-AS3), transcript variant 2, non-coding RNA"	Chr7	 79083276	 79084365	+	100505881	NR_038344.1	NA	NA	NA	NA	NA	inter
CUST_19150_PI429285431	1.7193371	A	2.7062206	A	0.504566559857784	0	lncRNA	20824-1_{1..1100}	lnc-MATR3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-MATR3-1:1	NA	NA	     1099	NA	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	Unknown
CUST_15486_PI429285431	2.0374727	A	4.9796834	P	0.130108696453755	0	lncRNA	17175-1_{1..376}	lnc-USP16-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP16-2:4	chr21	 29915172	 29915547	+	lnc-USP16-2	lnc-USP16-2:4	XLOC_013901	linc-USP16-4	NA	NA	NA	inter
CUST_17115_PI429285431	5.220105	P	5.626101	P	0.754715076771889	0	lncRNA	18825-1_{1..264}	lnc-ELFN1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELFN1-1:3	chr7	  1660293	  1660556	+	lnc-ELFN1-1	lnc-ELFN1-1:3	XLOC_005965	linc-ELFN1	NA	NA	NA	inter
CUST_41822_PI429285431	2.8641322	A	4.2144594	P	0.392203088079841	0	lncRNA	43420-1_{1..83}	ENST00000385078 ncrna:miRNA chromosome:GRCh37:10:53059333:53059415:1 gene:ENSG00000207813 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385078 ncrna:miRNA chromosome:GRCh37:10:53059333:53059415:1 gene:ENSG00000207813 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 53059333	 53059415	+	ENSG00000207813	ENST00000385078	NA	NA	PRKG1	NA	chr10:53049333-53069415	inner
CUST_25654_PI429285431	5.2635603	P	5.7167797	P	0.730411102468452	0	lncRNA	27184-1_{1..3000}	lnc-MFSD6L-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MFSD6L-1:4	chr17	  8770846	  8773845	-	lnc-MFSD6L-1	lnc-MFSD6L-1:4	ENSG00000174083.12	PIK3R6	PIK3R6	NA	chr17:8760846-8770994	inner
CUST_12733_PI429285431	1.5286816	A	1.4483229	A	1.05728088163243	0	lncRNA	14358-1_{1..663}	lnc-TMEM189-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM189-1:3	chr20	 48782567	 48783229	-	lnc-TMEM189-1	lnc-TMEM189-1:3	XLOC_013788	linc-TMEM189-5	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
CUST_42666_PI429285431	0.8805395	A	0.8810291	A	0.999660692718138	0	lncRNA	45573-1_{1..72}	ENST00000516269 ncrna:snoRNA chromosome:GRCh37:18:34222576:34222647:-1 gene:ENSG00000252078 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516269 ncrna:snoRNA chromosome:GRCh37:18:34222576:34222647:-1 gene:ENSG00000252078 gene_biotype:snoRNA transcript_biotype:snoRNA	chr18	 34222576	 34222647	-	ENSG00000252078	ENST00000516269	NA	NA	FHOD3	NA	chr18:34212576-34232647	inner
CUST_12477_PI429285431	3.831768	P	3.885866	P	0.963196463380407	0	lncRNA	14089-1_{1..694}	lnc-LRFN2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRFN2-3:1	chr6	 40243745	 40244438	-	lnc-LRFN2-3	lnc-LRFN2-3:1	XLOC_005711	linc-MOCS1-1	NA	NA	NA	inter
LNCA_21_P0011566	10.008738	P	10.835076	P	0.563958926838961	0	lncRNA	TCONS_l2_00011050	NA	NA	NA	NA	XLOC_l2_005952	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005952), lincRNA [TCONS_l2_00011050]"	chr17:4704481-4704422	hs|17p13.2	Agilent_HUMAN_G3V2	TCONS_l2_00011050	TCONS_l2_00011050	chr17	  4704422	  4704481	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34381_PI429285431	1.3481061	A	0.9840831	A	1.28700976514309	0	lncRNA	35867-1_{1..770}	n341250|BC036261|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3718|NULL|-1.1784500|-0.2114862	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341250|BC036261|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3718|NULL|-1.1784500|-0.2114862	chr7	 54643744	 54644513	-	NA	NA	NA	NA	VSTM2A	NA	chr7:54633744-54636948	inter
CUST_48930_PI429285431	0.88159096	A	0.88238305	A	0.999451115741859	0	lncRNA	52772-1_{1..240}	hg19_lincRNAsTranscripts_TCONS_l2_00019564 range=chr3:146134190-146139933 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019564 range=chr3:146134190-146139933 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	146134190	146134429	-	NA	NA	NA	NA	LOC440981	NA	chr3:146124190-146134390	inter
CUST_52155_PI429285431	2.0426643	A	3.2319543	P	0.438518617702794	0	lncRNA	55679-1_{1..853}	hg19_lincRNAsTranscripts_TCONS_l2_00017928 range=chr22:23712144-23723005 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017928 range=chr22:23712144-23723005 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 23712144	 23712996	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_352_PI429201921	1.369687	A	1.504398	A	0.910852276822609	0	lncRNA	228-1_{1..3000}	TC0Y000307.hg.1	 TCONS_00017586-XLOC_008319 // Rinn lincRNAs // linc-AMELY-5 chrY:-:9544434-9552871 // chrY // 100 // 100 // 0 // --- // 0///TCONS_00017597-XLOC_008319 // Rinn lincRNAs // linc-AMELY-5 chrY:-:9544434-9548661 // chrY // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:9544434-9548661	NA	Affy_HUMAN_HTA2.0	TCONS_00017597-XLOC_008319	linc-AMELY-5	chrY	  9544434	  9548661	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27658_PI429285431	0.8893584	A	0.8938904	A	0.996863585833268	0	lncRNA	29236-1_{1..680}	n324865|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171079|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171079|-0.8510500|-0.3227911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324865|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171079|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171079|-0.8510500|-0.3227911	chr21	 24182984	 24183663	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008348	2.1670542	A	1.8505876	A	1.245276920803	0	lncRNA	TCONS_00022532	NA	NA	NA	NA	XLOC_010856	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010856), lincRNA [TCONS_00022532]"	chr14:66596496-66596555	hs|14q23.3	Agilent_HUMAN_G3V2	TCONS_00022532	TCONS_00022532	chr14	 66596496	 66596555	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42200_PI429285431	6.379797	P	6.604428	P	0.855813890331286	0	lncRNA	44280-1_{1..83}	ENST00000408382 ncrna:miRNA chromosome:GRCh37:15:90838273:90838355:1 gene:ENSG00000221309 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408382 ncrna:miRNA chromosome:GRCh37:15:90838273:90838355:1 gene:ENSG00000221309 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 90838273	 90838355	+	ENSG00000221309	ENST00000408382	NA	NA	NA	NA	NA	inter
CUST_31806_PI429285431	3.4131825	P	3.4493685	P	0.975229721564147	0	lncRNA	33543-1_{1..2715}	n338348|AK094229|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|742|NULL|-1.0585600|-0.2473687	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338348|AK094229|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|742|NULL|-1.0585600|-0.2473687	chr19	 16683434	 16686148	+	NA	NA	NA	NA	SLC35E1	"hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40chr19:16673434-16683193"	NA	inner
CUST_10634_PI429285431	1.0695382	A	0.9143254	A	1.1135858619453	0	lncRNA	12167-1_{1..1656}	lnc-NPY5R-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NPY5R-1:4	chr4	164040537	164042192	+	lnc-NPY5R-1	lnc-NPY5R-1:4	XLOC_003765	linc-NPY5R-1	NAF1	NA	chr4:164047860-164051789	inter
CUST_40783_PI429285431	0.8856488	A	0.8807818	A	1.00337924414293	0	lncRNA	41497-2_{3001..3719}	n410521|NR_037663|lncRNA|Homosapiens||RefGeneNoncode|NR_037663||3.3739800|-0.1481415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410521|NR_037663|lncRNA|Homosapiens||RefGeneNoncode|NR_037663||3.3739800|-0.1481415	chr1	202119140	202119858	-	NA	NA	NA	NA	ARL8A	NA	chr1:202106140-202113866	inter
CUST_3633_PI429285431	1.211648	A	0.9046185	A	1.23715777563505	0	lncRNA	3603-1_{1..472}	"transcript_id ""ENST00000454991.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454991.1"" | genecode_v17"	chr10	 26932157	 26932628	+	ENSG00000234296.1	ENST00000454991.1	RP13-16H11.7	RP13-16H11.7-001	NA	NA	NA	inter
LNCA_21_P0002680	1.0067357	A	2.2823298	A	0.413055028509455	0	lncRNA	DQ993527	NA	DQ993527	NA	Hs.693440	XLOC_002380	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002380), lincRNA [TCONS_00005266]"	chr2:166983503-166983444	hs|2q24.3	Agilent_HUMAN_G3V2	DQ993527	DQ993527	chr2	166983444	166983503	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42166_PI429285431	0.88528454	A	0.89703715	A	0.991886802604836	0	lncRNA	44208-1_{1..70}	ENST00000581431 ncrna:miRNA chromosome:GRCh37:11:74431313:74431382:-1 gene:ENSG00000265902 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581431 ncrna:miRNA chromosome:GRCh37:11:74431313:74431382:-1 gene:ENSG00000265902 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 74431313	 74431382	-	ENSG00000265902	ENST00000581431	NA	NA	CHRDL2	NA	chr11:74421313-74441382	inner
CUST_46787_PI429285431	9.263181	P	8.3041	P	1.94407112261947	0	lncRNA	50933-1_{1..1613}	"gi|194733739|ref|NR_024043.1| Homo sapiens lectin, galactoside-binding, soluble, 9 (LGALS9), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|194733739|ref|NR_024043.1| Homo sapiens lectin, galactoside-binding, soluble, 9 (LGALS9), transcript variant 3, non-coding RNA"	Chr17	 25958174	 25959786	+	3965	NR_024043.1	NA	NA	NA	NA	NA	inter
CUST_38151_PI429285431	0.90598655	A	1.553756	A	0.63826637447561	0	lncRNA	39224-1_{1..927}	n381362|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hta.2||0.3661160|-0.1480581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381362|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hta.2||0.3661160|-0.1480581	chr1	228673894	228674820	-	NA	NA	NA	NA	RNF187	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00chr1:228675068-228683889"	NA	inter
CUST_33422_PI429285431	10.723035	P	10.440272	P	1.21652249691239	0	lncRNA	35000-2_{3001..4471}	n340150|BX648964|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2610|NULL|-0.7217750|-0.2663220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340150|BX648964|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2610|NULL|-0.7217750|-0.2663220	chr10	117819435	117820905	-	NA	NA	NA	NA	GFRA1	NA	chr10:117816436-117830910	inner
CUST_24917_PI429285431	2.843114	A	3.448022	P	0.65751330808726	0	lncRNA	26458-1_{1..708}	lnc-IFNK-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IFNK-2:1	chr9	 27397129	 27397836	+	lnc-IFNK-2	lnc-IFNK-2:1	ENSG00000237734.1	RP11-298E2.2	MOBKL2B	NA	chr9:27387129-27407561	inner
CUST_29262_PI429285431	8.244388	P	8.767383	P	0.695925607805736	0	lncRNA	31013-1_{1..299}	n332362|EU436746|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000557781|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000557781|0.2305440|-0.0279278	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332362|EU436746|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000557781|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000557781|0.2305440|-0.0279278	chr2	 26680850	 26681148	-	NA	NA	NA	NA	OTOF	NA	chr2:26680071-26693576	inner
CUST_11086_PI429285431	1.9050068	A	1.0040107	A	1.867354841852	0	lncRNA	12640-1_{1..288}	lnc-MRP63-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRP63-1:1	chr13	 21771693	 21771980	+	lnc-MRP63-1	lnc-MRP63-1:1	XLOC_010296	linc-FGF9-4	NA	NA	NA	inter
CUST_36854_PI429285431	0.91076857	A	1.1621381	A	0.840098542942877	0	lncRNA	38015-1_{1..3000}	n345323|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_872|NULL|-1.3250500|-0.4053388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345323|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_872|NULL|-1.3250500|-0.4053388	chr16	 72314107	 72317106	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009333	0.90685683	A	1.7584912	A	0.554156599038715	0	lncRNA	THC2708289	NA	NA	NA	NA	XLOC_012525	NA	NA	THC2708289	NA	"BROAD Institute lincRNA (XLOC_012525), lincRNA [TCONS_00025697]"	chr17:053531349-053531290	hs|17q22	Agilent_HUMAN_G3V2	THC2708289	THC2708289	chr17	 53531290	 53531349	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24297_PI429285431	0.9003829	A	0.9158137	A	0.989361181330729	0	lncRNA	25848-1_{1..478}	lnc-STK32C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STK32C-1:1	chr10	133999327	133999804	-	lnc-STK32C-1	lnc-STK32C-1:1	ENSG00000235010.1	RP11-140A10.3	JAKMIP3	NA	chr10:133989327-133998313	inter
CUST_23765_PI429285431	1.0064348	A	0.91081417	A	1.06852497574298	0	lncRNA	25328-1_{1..408}	lnc-LRRC38-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC38-2:1	chr1	 14105473	 14105880	-	lnc-LRRC38-2	lnc-LRRC38-2:1	ENSG00000227612.1	RP5-1177E19.2	PRDM2	"hg19_refFlat_PRDM2:range=chr1:14099665-141130225'pad=0,hg19_refFlat_PRDM2:range=chr1:14099665-141130225'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_PRDM2:range=chr1:14042101-141430425'pad=0,hg19_refFlat_PRDM2:range=chr1:14042101-141430425'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_PRDM2:range=chr1:14042101-141130225'pad=0,hg19_refFlat_PRDM2:range=chr1:14042101-141130225'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00chr1:14095473-14115625"	NA	inner
CUST_21846_PI429285431	1.1743709	A	1.6543466	A	0.716989700505371	0	lncRNA	23456-1_{1..709}	lnc-ZDHHC17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZDHHC17-1:1	chr12	 77261300	 77262008	+	lnc-ZDHHC17-1	lnc-ZDHHC17-1:1	ENSG00000257445.1	RP11-461F16.4	CSRP2	NA	chr12:77252496-77271963	inner
CUST_30869_PI429285431	3.8740401	P	4.2824755	P	0.753440035062099	0	lncRNA	32657-1_{1..363}	n336877|AY686872|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332098|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332098|2.6297000|-0.0422969	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336877|AY686872|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332098|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332098|2.6297000|-0.0422969	chr14	106330425	106330787	-	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106859077	inter
LNCA_21_P0013718	0.9057062	A	0.9228746	A	0.988170299616808	0	lncRNA	TCONS_l2_00029908	NA	NA	NA	NA	XLOC_l2_015132	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015132), lincRNA [TCONS_l2_00029908]"	chr9:23671845-23671786	hs|9p21.3	Agilent_HUMAN_G3V2	TCONS_l2_00029908	TCONS_l2_00029908	chr9	 23671786	 23671845	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12231_PI429285431	1.0652725	A	1.6507348	A	0.666435750360342	0	lncRNA	13837-1_{1..1579}	lnc-SRBD1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRBD1-3:1	chr2	 45537798	 45539376	-	lnc-SRBD1-3	lnc-SRBD1-3:1	XLOC_002079	linc-SIX2-1	NA	NA	NA	inter
CUST_14959_PI429285431	2.3966346	A	2.9283397	A	0.691736697333214	0	lncRNA	16622-2_{3001..3188}	lnc-PREX1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PREX1-2:3	chr20	 47134673	 47134860	-	lnc-PREX1-2	lnc-PREX1-2:3	XLOC_013779	linc-SULF2-10	NA	NA	NA	inter
LNCA_21_P0010471	7.561733	P	7.7843404	P	0.85701514221188	0	lncRNA	TCONS_00029852	NA	NA	NA	NA	XLOC_014288	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014288), lincRNA [TCONS_00029852]"	chr22:51038473-51038532	hs|22q13.33	Agilent_HUMAN_G3V2	TCONS_00029852	TCONS_00029852	chr22	 51038473	 51038532	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36790_PI429285431	2.1914966	A	2.5213652	A	0.795608944151314	0	lncRNA	37962-1_{1..353}	n345269|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_818|NULL|-1.4068200|-0.3457713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345269|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_818|NULL|-1.4068200|-0.3457713	chr14	 69840091	 69840443	+	NA	NA	NA	NA	ERH	NA	chr14:69846840-69850444	inter
CUST_226_PI429285431	0.8991391	A	0.9091427	A	0.99309001734678	0	lncRNA	216-1_{1..1807}	"transcript_id ""ENST00000445070.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445070.1"" | genecode_v17"	chr1	 48283738	 48285544	+	ENSG00000225028.1	ENST00000445070.1	RP11-330M19.1	RP11-330M19.1-001	LOC388630	NA	chr1:48273738-48295909	inner
CUST_15015_PI429285431	2.1432927	A	2.459549	A	0.80315130134423	0	lncRNA	16677-1_{1..821}	lnc-PCBP3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCBP3-1:2	chr21	 47016305	 47017125	+	lnc-PCBP3-1	lnc-PCBP3-1:2	XLOC_013985	linc-PCBP3	NA	NA	NA	inter
CUST_49364_PI429285431	1.2228065	A	1.040785	A	1.13447239147128	0	lncRNA	53177-1_{1..263}	hg19_lincRNAsTranscripts_TCONS_l2_00022452 range=chr5:98312478-98335418 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022452 range=chr5:98312478-98335418 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 98312478	 98312740	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002146	0.8960426	A	0.90734416	A	0.992196958579532	0	lncRNA	ENST00000416509	NA	NA	NA	NA	XLOC_002526	NA	ENST00000416509	NA	NA	"BROAD Institute lincRNA (XLOC_002526), lincRNA [TCONS_00003517]"	chr2:238031635-238031576	hs|2q37.3	Agilent_HUMAN_G3V2	ENST00000416509	ENST00000416509	chr2	238031576	238031635	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25522_PI429285431	1.9562153	A	1.141357	A	1.75912536390367	0	lncRNA	27053-1_{1..1757}	lnc-SLC12A7-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC12A7-5:1	chr5	  1178553	  1180309	-	lnc-SLC12A7-5	lnc-SLC12A7-5:1	ENSG00000249201.2	CTD-3080P12.3	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_3876_PI429285431	2.129109	A	2.506595	A	0.769777815862714	0	lncRNA	3845-1_{1..281}	"transcript_id ""ENST00000531858.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531858.1"" | genecode_v17"	chr11	 22513658	 22513938	+	ENSG00000255357.1	ENST00000531858.1	RP11-34N19.1	RP11-34N19.1-001	NA	NA	NA	inter
CUST_16906_PI429285431	4.8261456	P	4.46584	P	1.28369778904844	0	lncRNA	18616-1_{1..598}	lnc-CCDC74A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC74A-1:2	chr2	132310586	132311183	+	lnc-CCDC74A-1	lnc-CCDC74A-1:2	XLOC_001676	linc-C2orf27A-2	NA	NA	NA	inter
LNCA_21_P0007603	0.8847391	A	0.89049566	A	0.996017806710734	0	lncRNA	TCONS_00020514	NA	NA	NA	NA	XLOC_009831	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009831), lincRNA [TCONS_00020514]"	chr12:91077035-91077094	hs|12q21.33	Agilent_HUMAN_G3V2	TCONS_00020514	TCONS_00020514	chr12	 91077035	 91077094	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10403_PI429285431	0.89823186	A	2.2679818	A	0.386958313432423	0	lncRNA	11929-2_{3001..3218}	lnc-COL4A1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL4A1-2:1	chr13	110712473	110712690	-	lnc-COL4A1-2	lnc-COL4A1-2:1	XLOC_010719	linc-IRS2-2	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80"	NA	inter
LNCA_21_P0011760	0.88303053	A	0.88712066	A	0.99716895291572	0	lncRNA	TCONS_l2_00013208	NA	NA	NA	NA	XLOC_l2_007112	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007112), lincRNA [TCONS_l2_00013208]"	chr19:53483764-53483705	hs|19q13.41	Agilent_HUMAN_G3V2	TCONS_l2_00013208	TCONS_l2_00013208	chr19	 53483705	 53483764	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7152_PI429285431	0.89230895	A	0.8883048	A	1.00277932045261	0	lncRNA	7089-1_{1..166}	"transcript_id ""ENST00000416110.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416110.1"" | genecode_v17"	chrY	 24997731	 24997896	+	ENSG00000228240.1	ENST00000416110.1	TTTY17A	TTTY17A-001	NA	NA	NA	inter
LNCA_19_P00800283	5.9997663	P	6.072256	P	0.95099542119529	0	lncRNA	TCONS_00020046	NA	NA	NA	NA	XLOC_009387	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009387), lincRNA [TCONS_00020046]"	chr11:18283958-18283900	hs|11p15.1	Agilent_HUMAN_G3V2	TCONS_00020046	TCONS_00020046	chr11	 18283900	 18283958	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18320_PI429285431	4.200856	P	4.516077	P	0.803727861836606	0	lncRNA	20047-1_{1..460}	lnc-ARHGEF35-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARHGEF35-1:6	chr7	144052431	144052890	-	lnc-ARHGEF35-1	lnc-ARHGEF35-1:6	ENSG00000244479	RP4-798C17.6	ARHGEF5	NA	chr7:144052489-144062693	inner
CUST_11094_PI429285431	1.014167	A	0.999867	A	1.00996129130891	0	lncRNA	12648-1_{1..261}	lnc-C5orf30-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C5orf30-2:1	chr5	104098977	104099237	+	lnc-C5orf30-2	lnc-C5orf30-2:1	XLOC_004497	linc-FER-4	NA	NA	NA	inter
CUST_25978_PI429285431	0.8897503	A	0.8833452	A	1.00444954697325	0	lncRNA	27498-1_{1..611}	lnc-MAGEA10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MAGEA10-1:1	chrX	151306947	151307557	-	lnc-MAGEA10-1	lnc-MAGEA10-1:1	ENSG00000266560.1	RP11-1007I13.4	MAGEA10-MAGEA5	NA	chrX:151296947-151307025	inner
CUST_42229_PI429285431	8.283367	P	8.778009	P	0.709737775330486	0	lncRNA	44338-1_{1..80}	ENST00000410783 ncrna:miRNA chromosome:GRCh37:X:113997744:113997823:1 gene:ENSG00000222715 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410783 ncrna:miRNA chromosome:GRCh37:X:113997744:113997823:1 gene:ENSG00000222715 gene_biotype:miRNA transcript_biotype:miRNA	chrX	113997744	113997823	+	ENSG00000222715	ENST00000410783	NA	NA	HTR2C	NA	chrX:113987744-114007823	inner
CUST_6488_PI429285431	0.8911402	A	0.89967483	A	0.994101708901534	0	lncRNA	6430-1_{1..2671}	"transcript_id ""ENST00000590657.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590657.1"" | genecode_v17"	chr19	 36803969	 36806639	-	ENSG00000232677.2	ENST00000590657.1	LINC00665	LINC00665-007	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70"	NA	inter
LNCA_19_P00803124	1.4547204	A	0.88336	A	1.48592407335517	0	lncRNA	TCONS_l2_00019680	NA	NA	NA	NA	XLOC_l2_010494	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010494), lincRNA [TCONS_l2_00019680]"	chr3:193766741-193766682	hs|3q29	Agilent_HUMAN_G3V2	TCONS_l2_00019680	TCONS_l2_00019680	chr3	193766682	193766741	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00317533	0.88146526	A	0.88316524	A	0.99882235762166	0	lncRNA	ENST00000418215	NA	NA	NA	NA	XLOC_006237	NA	ENST00000418215	NA	NA	"BROAD Institute lincRNA (XLOC_006237), lincRNA [TCONS_00013076]"	chr7:126990512-126990571	hs|7q31.33	Agilent_HUMAN_G3V2	ENST00000418215	ENST00000418215	chr7	126990512	126990571	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_742_PI429285431	0.9134861	A	0.9167206	A	0.997760526814684	0	lncRNA	734-1_{1..3000}	"transcript_id ""ENST00000602458.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602458.1"" | genecode_v17"	chr2	 10076489	 10079488	+	ENSG00000269973.1	ENST00000602458.1	RP11-95D17.1	RP11-95D17.1-001	TAF1B	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-23.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-60.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10chr2:10066489-10074545"	NA	inter
CUST_17637_PI429285431	0.90286463	A	1.1072663	A	0.867898556743987	0	lncRNA	19365-1_{1..2055}	lnc-ZNF462-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ZNF462-1:1	chr9	109441839	109443893	+	lnc-ZNF462-1	lnc-ZNF462-1:1	XLOC_007502	linc-ZNF462-1	NA	NA	NA	inter
CUST_19267_PI429285431	1.3011947	A	1.2689091	A	1.02263095349563	0	lncRNA	20935-1_{1..361}	lnc-TFB2M-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TFB2M-2:1	chr1	246485586	246485946	-	lnc-TFB2M-2	lnc-TFB2M-2:1	ENSG00000230184.1	SMYD3-IT1	SMYD3	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80chr1:246475586-246495740"	NA	inner
LNCA_33_P3404047	6.3916416	P	6.6066713	P	0.86152842369932	0	lncRNA	XR_108319	XR_108319	XR_108319	100292409	NA	LOC100292409	uncharacterized LOC100292409	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100292409 (LOC100292409), miscRNA [XR_108319]"	chr1:183604736-183604795	hs|1q25.3	Agilent_HUMAN_G3V2	XR_108319	XR_108319	chr1	183604736	183604795	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31168_PI429285431	0.8986397	A	0.8890382	A	1.00667744805945	0	lncRNA	32963-1_{1..218}	n337586|M77249|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000397432|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000397432|0.6344110|-0.1023511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337586|M77249|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000397432|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000397432|0.6344110|-0.1023511	chr11	113287545	113287762	-	NA	NA	NA	NA	DRD2	NA	chr11:113280317-113297763	inner
LNCA_21_P0014063	0.9041655	A	2.2511392	A	0.393115812416023	0	lncRNA	XR_108325	XR_108325	XR_108325	NA	Hs.288478	LOC100506546	uncharacterized LOC100506546	NA	THC2491834	NA	"PREDICTED: Homo sapiens hypothetical LOC100506546, transcript variant 2 (LOC100506546), miscRNA [XR_108325]"	chr1:200996573-200996632	hs|1q32.1	Agilent_HUMAN_G3V2	XR_108325	XR_108325	chr1	200996573	200996632	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3717_PI429285431	0.90659654	A	0.9133345	A	0.995340491372777	0	lncRNA	3685-1_{1..920}	"transcript_id ""ENST00000601389.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601389.1"" | genecode_v17"	chr10	 67375491	 67376410	+	ENSG00000228065.5	ENST00000601389.1	RP11-222A11.1	RP11-222A11.1-006	NA	NA	NA	inter
CUST_21256_PI429285431	0.9036483	A	1.4385612	A	0.690200344988336	0	lncRNA	22881-1_{1..497}	lnc-SCRN3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SCRN3-4:1	chr2	176032786	176033282	+	lnc-SCRN3-4	lnc-SCRN3-4:1	ENSG00000229750.1	AC096649.2	ATF2	NA	chr2:176022786-176032897	inner
CUST_23133_PI429285431	0.8789504	A	0.88154286	A	0.998204657219686	0	lncRNA	24704-1_{1..420}	lnc-KIAA0020-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0020-2:1	chr9	  2045835	  2046254	-	lnc-KIAA0020-2	lnc-KIAA0020-2:1	ENSG00000236199.1	RP11-264I13.2	SMARCA2	NA	chr9:2035835-2056023	inner
LNCA_21_P0011693	1.7375726	A	1.2396816	A	1.41214770829812	0	lncRNA	BC041478	NA	BC041478	NA	Hs.633102	XLOC_l2_006718	NA	NA	THC2496644	NA	"BROAD Institute lincRNA (XLOC_l2_006718), lincRNA [TCONS_l2_00012517]"	chr19:37746848-37747323	hs|19q13.12	Agilent_HUMAN_G3V2	BC041478	BC041478	chr19	 37746848	 37747323	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9800_PI429285431	1.8627839	A	1.3164825	A	1.46033706446392	0	lncRNA	11317-1_{1..453}	lnc-AC092329.1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092329.1-2:4	chr19	 23493350	 23493802	-	lnc-AC092329.1-2	lnc-AC092329.1-2:4	XLOC_013275	linc-ZNF99-5	NA	NA	NA	inter
LNCA_33_P3337733	6.2452703	P	6.1286964	P	1.08415715572128	0	lncRNA	XR_109367	XR_109367	XR_109367	   400576	Hs.446616	FLJ45831	uncharacterized FLJ45831	ENST00000379640	THC2667143	NA	"PREDICTED: Homo sapiens hypothetical FLJ45831 (FLJ45831), miscRNA [XR_109367]"	chr17:14671053-14670994	hs|17p12	Agilent_HUMAN_G3V2	XR_109367	XR_109367	chr17	 14670994	 14671053	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27045_PI429285431	0.89768803	A	0.9020364	A	0.9969904773144	0	lncRNA	28576-1_{1..561}	n324151|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051728|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051728|1.3760800|-0.4679167	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324151|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051728|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051728|1.3760800|-0.4679167	chr9	 12088659	 12089219	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42948_PI429285431	6.200434	P	6.6971374	P	0.708724388119958	0	lncRNA	46068-1_{1..80}	ENST00000364084 ncrna:snoRNA chromosome:GRCh37:1:173836809:173836888:-1 gene:ENSG00000200954 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364084 ncrna:snoRNA chromosome:GRCh37:1:173836809:173836888:-1 gene:ENSG00000200954 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	173836809	173836888	-	ENSG00000200954	ENST00000364084	NA	NA	DARS2	NA	chr1:173826809-173827682	inter
CUST_5312_PI429285431	1.0045803	A	1.4457451	A	0.736539702689701	0	lncRNA	5252-1_{1..515}	"transcript_id ""ENST00000556519.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556519.1"" | genecode_v17"	chr15	 93856415	 93856929	+	ENSG00000257060.2	ENST00000556519.1	RP11-266O8.1	RP11-266O8.1-002	NA	NA	NA	inter
CUST_19079_PI429285431	5.7008705	P	5.5807233	P	1.08684574911563	0	lncRNA	20770-1_{1..1744}	lnc-FBXO25-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXO25-5:4	chr8	   982586	   984329	+	lnc-FBXO25-5	lnc-FBXO25-5:4	ENSG00000237647	CTD-3212A4.1	NA	NA	NA	inter
LNCA_21_P0009538	3.384464	P	4.4215174	P	0.487321777354711	0	lncRNA	TCONS_00026472	NA	NA	NA	NA	XLOC_012800	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012800), lincRNA [TCONS_00026472]"	chr18:27755734-27737536	hs|18q12.1	Agilent_HUMAN_G3V2	TCONS_00026472	TCONS_00026472	chr18	 27737536	 27755734	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4743_PI429285431	0.88788426	A	1.5023991	A	0.653149502490164	0	lncRNA	4687-1_{1..358}	"transcript_id ""ENST00000320322.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000320322.2"" | genecode_v17"	chr14	 21576202	 21576559	+	ENSG00000178107.2	ENST00000320322.2	RP11-998D10.4	RP11-998D10.4-001	ZNF219	NA	chr14:21566202-21572863	inter
CUST_3100_PI429285431	0.9063455	A	0.9093119	A	0.997945960635617	0	lncRNA	3080-1_{1..584}	"transcript_id ""ENST00000603280.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603280.1"" | genecode_v17"	chr8	 50819423	 50820006	-	ENSG00000271148.1	ENST00000603280.1	RP11-401N18.1	RP11-401N18.1-001	SNTG1	NA	chr8:50824597-50830006	inter
LNCA_21_P0008842	1.8443103	A	1.7017889	A	1.10383260072455	0	lncRNA	TCONS_00024034	NA	NA	NA	NA	XLOC_011397	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011397), lincRNA [TCONS_00024034]"	chr15:22543650-22543591	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00024034	TCONS_00024034	chr15	 22543591	 22543650	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16436_PI429285431	0.8802161	A	0.8820342	A	0.998740582843308	0	lncRNA	18135-1_{1..330}	lnc-GJA10-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GJA10-6:1	chr6	 92955808	 92956137	+	lnc-GJA10-6	lnc-GJA10-6:1	XLOC_005387	linc-MANEA-7	NA	NA	NA	inter
CUST_21042_PI429285431	0.90981877	A	0.89883405	A	1.00764308811491	0	lncRNA	22669-1_{1..1012}	lnc-IL5RA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL5RA-1:1	chr3	  3102751	  3103762	-	lnc-IL5RA-1	lnc-IL5RA-1:1	ENSG00000237990.1	CNTN4-AS1	IL5RA	"hg19_refFlat_CNTN4:range=chr3:2942413-30979045'pad=0,hg19_refFlat_CNTN4:range=chr3:2942413-30979045'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_CNTN4:range=chr3:2613188-30979045'pad=0,hg19_refFlat_CNTN4:range=chr3:2613188-30979045'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10chr3:3111401-3112829"	NA	inter
CUST_30957_PI429285431	6.346792	P	7.201433	P	0.553002918696837	0	lncRNA	32745-1_{1..388}	n337077|DQ225273|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342501|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342501|2.1514600|-0.1020794	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337077|DQ225273|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342501|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342501|2.1514600|-0.1020794	chr19	  1556758	  1557145	-	NA	NA	NA	NA	MBD3	NA	chr19:1576678-1577876	inner
CUST_51992_PI429285431	0.88079774	A	2.0611525	A	0.441242982760026	0	lncRNA	55528-1_{1..635}	hg19_lincRNAsTranscripts_TCONS_l2_00017189 range=chr21:29817516-30144427 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017189 range=chr21:29817516-30144427 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 29817516	 29818150	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014109	0.88228667	A	0.8845063	A	0.998462652654583	0	lncRNA	XR_108464	XR_108464	XR_108464	NA	NA	LOC100506591	uncharacterized LOC100506591	NA	THC2644314	NA	"PREDICTED: Homo sapiens hypothetical LOC100506591, transcript variant 1 (LOC100506591), miscRNA [XR_108464]"	chr3:112065615-112065556	hs|3q13.2	Agilent_HUMAN_G3V2	XR_108464	XR_108464	chr3	112065556	112065615	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31908_PI429285431	0.9256942	A	1.1316316	A	0.86697518163035	0	lncRNA	33638-2_{3001..4142}	n338463|AK127212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|860|NULL|-0.3633520|-0.2065963	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338463|AK127212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|860|NULL|-0.3633520|-0.2065963	chr1	201867963	201869104	+	NA	NA	NA	NA	LMOD1	"hg19_refFlat_LMOD1:range=chr1:201867500-2019154685'pad=0,hg19_refFlat_LMOD1:range=chr1:201867500-2019154685'pad=0 3'pad=0 strand=- repeatMasking=none,-105.50chr1:201865584-201879105"	NA	inner
CUST_25717_PI429285431	1.4617128	A	1.9562826	A	0.709773295206956	0	lncRNA	27245-1_{1..419}	lnc-PARVA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PARVA-1:1	chr11	 12870647	 12871065	+	lnc-PARVA-1	lnc-PARVA-1:1	ENSG00000255067.1	RP11-47J17.1	TEAD1	"hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60chr11:12860647-12880980"	NA	inner
LNCA_21_P0002335	0.89606583	A	0.92086345	A	0.982958477430763	0	lncRNA	ENST00000413304	NA	NA	NA	NA	XLOC_001789	NA	ENST00000413304	NA	NA	"BROAD Institute lincRNA (XLOC_001789), lincRNA [TCONS_00003975]"	chr2:192679106-192679165	hs|2q32.3	Agilent_HUMAN_G3V2	ENST00000413304	ENST00000413304	chr2	192679106	192679165	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32012_PI429285431	0.9163013	A	0.91403854	A	1.00156965633719	0	lncRNA	33733-1_{1..2531}	n338577|AK123296|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|983|NULL|-0.9274940|-0.3098852	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338577|AK123296|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|983|NULL|-0.9274940|-0.3098852	chr19	 37638506	 37641036	-	NA	NA	NA	NA	ZNF585A	NA	chr19:37640990-37651036	inner
CUST_41011_PI429285431	3.7630477	P	3.8180387	P	0.9626004480971	0	lncRNA	41672-1_{1..3000}	n411617|NR_040086|lncRNA|Homosapiens||RefGeneNoncode|NR_040086||7.2358100|-0.1711896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411617|NR_040086|lncRNA|Homosapiens||RefGeneNoncode|NR_040086||7.2358100|-0.1711896	chr21	 37406840	 37409839	-	NA	NA	NA	NA	SETD4	NA	chr21:37396840-37432819	inter
CUST_28972_PI429285431	1.427905	A	1.659634	A	0.851613662293337	0	lncRNA	30694-1_{1..814}	n326404|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000100475|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000100475|-0.4583410|-0.3627145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326404|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000100475|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000100475|-0.4583410|-0.3627145	chr1	144087481	144088294	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-35.91;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.62;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10"	NA	inter
CUST_28579_PI429285431	1.6155826	A	1.0767947	A	1.45275145541178	0	lncRNA	30259-1_{1..606}	n325940|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048970|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048970|-0.8670860|-0.1015872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325940|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048970|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048970|-0.8670860|-0.1015872	chr10	 81058518	 81059123	-	NA	NA	NA	NA	ZMIZ1	"hg19_refFlat_ZMIZ2:range=chr7:44795849-448072225'pad=0,hg19_refFlat_ZMIZ2:range=chr7:44795849-448072225'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZMIZ1:range=chr10:80961390-810725065'pad=0,hg19_refFlat_ZMIZ1:range=chr10:80961390-810725065'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.00chr10:81048518-81071950"	NA	inner
CUST_24135_PI429285431	8.717483	P	8.554361	P	1.11970757155265	0	lncRNA	25687-1_{1..1626}	lnc-RHOF-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RHOF-1:8	chr12	122240785	122242410	-	lnc-RHOF-1	lnc-RHOF-1:8	ENSG00000256392.1	RP11-347I19.3	SETD1B	NA	chr12:122242638-122250834	inter
CUST_51120_PI429285431	0.9167781	A	1.1225393	A	0.867081073971835	0	lncRNA	54755-1_{1..315}	hg19_lincRNAsTranscripts_TCONS_l2_00007012 range=chr13:111748954-111755103 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007012 range=chr13:111748954-111755103 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	111748954	111749268	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27032_PI429285431	0.9164873	A	0.91773504	A	0.999135506426996	0	lncRNA	28563-1_{1..463}	n324138|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051953|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051953|-1.1429500|-0.5226600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324138|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051953|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051953|-1.1429500|-0.5226600	chr9	 25770053	 25770515	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36593_PI429285431	4.830418	P	5.2633314	P	0.740764363201632	0	lncRNA	37787-1_{1..413}	n345089|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_638|NULL|-1.2895100|-0.4530307	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345089|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_638|NULL|-1.2895100|-0.4530307	chrX	 64816660	 64817072	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44443_PI429285431	9.004146	P	7.00424	P	3.99973938515049	0	lncRNA	49053-1_{1..3000}	"gi|307691205|ref|NR_036641.1| Homo sapiens platelet derived growth factor C (PDGFC), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|307691205|ref|NR_036641.1| Homo sapiens platelet derived growth factor C (PDGFC), transcript variant 2, non-coding RNA"	Chr4	157682763	157685762	-	56034	NR_036641.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004247	0.90676475	A	0.9269159	A	0.986129383098048	0	lncRNA	THC2666140	NA	NA	NA	NA	XLOC_004366	NA	NA	THC2666140	NA	"BROAD Institute lincRNA (XLOC_004366), lincRNA [TCONS_00009945]"	chr5:043100252-043100311	hs|5p12	Agilent_HUMAN_G3V2	THC2666140	THC2666140	chr5	 43100252	 43100311	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11101_PI429285431	1.7747685	A	2.043852	A	0.829846554515766	0	lncRNA	12657-1_{1..2874}	lnc-GPX5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPX5-1:1	chr6	 28557006	 28559879	+	lnc-GPX5-1	lnc-GPX5-1:1	XLOC_005223	linc-LOC100129636-4	SCAND3	NA	chr6:28547006-28555112	inter
CUST_31497_PI429285431	0.91409236	A	2.032745	A	0.460523716289234	0	lncRNA	33260-2_{3001..3834}	n337977|AK128778|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|363|NULL|-1.0820600|-0.3246153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337977|AK128778|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|363|NULL|-1.0820600|-0.3246153	chr1	 61763223	 61764056	+	NA	NA	NA	NA	NFIA	NA	chr1:61750223-61774056	inner
CUST_43104_PI429285431	1.4423544	A	1.4409475	A	1.0009756644195	0	lncRNA	47728-1_{1..189}	ENST00000410423 ncrna:snRNA chromosome:GRCh37:7:53843829:53844017:1 gene:ENSG00000222355 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410423 ncrna:snRNA chromosome:GRCh37:7:53843829:53844017:1 gene:ENSG00000222355 gene_biotype:snRNA transcript_biotype:snRNA	chr7	 53843829	 53844017	+	ENSG00000222355	ENST00000410423	NA	NA	NA	NA	NA	inter
CUST_25781_PI429285431	1.2374303	A	1.9386436	A	0.615054730860527	0	lncRNA	27304-1_{1..765}	lnc-NAIF1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NAIF1-2:1	chr9	130856596	130857360	-	lnc-NAIF1-2	lnc-NAIF1-2:1	ENSG00000230536.1	RP11-379C10.4	SLC25A25	NA	chr9:130846596-130866736	inner
CUST_7760_PI429285431	5.0121617	P	5.168981	P	0.89700050346019	0	lncRNA	9387-1_{1..252}	lnc-SPO11-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPO11-1:3	chr20	 55855470	 55855721	+	lnc-SPO11-1	lnc-SPO11-1:3	ENSG00000226308	XLOC_013583	NA	NA	NA	inter
CUST_7400_PI429285431	4.2536974	P	4.540215	P	0.819878708095939	0	lncRNA	9045-1_{1..2170}	lnc-COL20A1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL20A1-2:1	chr20	 62026221	 62028390	+	lnc-COL20A1-2	lnc-COL20A1-2:1	ENSG00000250203	XLOC_013611	NA	NA	NA	inter
CUST_15610_PI429285431	0.8888412	A	0.9004853	A	0.991961408589882	0	lncRNA	17297-1_{1..362}	lnc-RRP15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RRP15-1:1	chr1	218339964	218340325	+	lnc-RRP15-1	lnc-RRP15-1:1	XLOC_000564	linc-RRP15-1	NA	NA	NA	inter
LNCA_21_P0003104	0.9052385	A	0.9220409	A	0.988421022187898	0	lncRNA	TCONS_00006447	NA	NA	NA	NA	XLOC_003055	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003055), lincRNA [TCONS_00006447]"	chr3:14432509-14431870	hs|3p25.1	Agilent_HUMAN_G3V2	TCONS_00006447	TCONS_00006447	chr3	 14431870	 14432509	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30711_PI429285431	0.89846885	A	0.91030675	A	0.991828165455341	0	lncRNA	32493-1_{1..442}	n336227|X98405|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325079|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325079|1.0411900|-0.1123927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336227|X98405|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325079|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325079|1.0411900|-0.1123927	chr19	 35801511	 35801952	+	NA	NA	NA	NA	MAG	NA	chr19:35791511-35804710	inner
CUST_47664_PI429285431	9.069998	P	9.281013	P	0.863929204902192	0	lncRNA	51646-1_{1..2148}	"gi|404434385|ref|NR_073156.1| Homo sapiens HAUS augmin-like complex, subunit 7 (HAUS7), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|404434385|ref|NR_073156.1| Homo sapiens HAUS augmin-like complex, subunit 7 (HAUS7), transcript variant 4, non-coding RNA"	NW_003871103.3	   881648	   883795	-	55559	NR_073156.1	NA	NA	NA	NA	NA	Unknown
CUST_42966_PI429285431	3.8943636	P	3.945672	P	0.965060705083867	0	lncRNA	46110-1_{1..69}	ENST00000364977 ncrna:snoRNA chromosome:GRCh37:13:107973243:107973311:-1 gene:ENSG00000201847 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364977 ncrna:snoRNA chromosome:GRCh37:13:107973243:107973311:-1 gene:ENSG00000201847 gene_biotype:snoRNA transcript_biotype:snoRNA	chr13	107973243	107973311	-	ENSG00000201847	ENST00000364977	NA	NA	FAM155A	NA	chr13:107963243-107983311	inner
CUST_2381_PI429285431	0.90185994	A	1.2638873	A	0.778070420693669	0	lncRNA	2374-1_{1..577}	"transcript_id ""ENST00000514287.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514287.1"" | genecode_v17"	chr5	139028584	139029160	-	ENSG00000250635.1	ENST00000514287.1	CTD-3224K15.2	CTD-3224K15.2-001	CXXC5	NA	chr5:139028301-139039313	inner
CUST_35491_PI429285431	0.8829511	A	1.3276722	A	0.734726339287409	0	lncRNA	36899-1_{1..2529}	n342589|AK126025|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5089|NULL|6.7241400|-0.1904026	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342589|AK126025|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5089|NULL|6.7241400|-0.1904026	chr10	 27687115	 27689643	-	NA	NA	NA	NA	PTCHD3	NA	chr10:27677115-27703297	inner
LNCA_21_P0013104	0.895182	A	0.9334612	A	0.973815790956675	0	lncRNA	TCONS_l2_00024954	NA	NA	NA	NA	XLOC_l2_013149	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013149), lincRNA [TCONS_l2_00024954]"	chr6:143360287-143360228	hs|6q24.2	Agilent_HUMAN_G3V2	TCONS_l2_00024954	TCONS_l2_00024954	chr6	143360228	143360287	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48252_PI429285431	1.8200581	A	2.49521	A	0.626266276855065	0	lncRNA	52114-1_{1..1657}	hg19_lincRNAsTranscripts_TCONS_l2_00000968 range=chr1:725922-745561 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000968 range=chr1:725922-745561 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	   725922	   727578	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50377_PI429285431	8.233645	P	8.769815	P	0.689599197190096	0	lncRNA	54089-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030325 range=chrX:106805389-106848479 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030325 range=chrX:106805389-106848479 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	106805389	106808388	+	NA	NA	NA	NA	FRMPD3	NA	chrX:106795389-106848479	inter
CUST_7634_PI429285431	0.90453154	A	0.9192836	A	0.989826752347213	0	lncRNA	9266-1_{1..362}	lnc-RASA1-7:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASA1-7:11	chr5	 88261658	 88262019	+	lnc-RASA1-7	lnc-RASA1-7:11	ENSG00000248309	CTC-454M9.1	NA	NA	NA	inter
LNCA_21_P0011388	1.442554	A	2.227964	A	0.580187050203084	0	lncRNA	TCONS_l2_00009364	NA	NA	NA	NA	XLOC_l2_005074	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005074), lincRNA [TCONS_l2_00009364]"	chr15:100326149-100326090	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_l2_00009364	TCONS_l2_00009364	chr15	100326090	100326149	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007030	3.03086	P	2.8867683	A	1.10503472033871	0	lncRNA	TCONS_00018636	NA	NA	NA	NA	XLOC_008984	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008984), lincRNA [TCONS_00018636]"	chr10:127473789-127473730	hs|10q26.13	Agilent_HUMAN_G3V2	TCONS_00018636	TCONS_00018636	chr10	127473730	127473789	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4522_PI429285431	5.0653768	P	5.6622753	P	0.661173817447898	0	lncRNA	4470-1_{1..196}	"transcript_id ""ENST00000541840.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000541840.1"" | genecode_v17"	chr12	131112863	131113058	-	ENSG00000256725.1	ENST00000541840.1	RP11-662M24.2	RP11-662M24.2-002	NA	NA	NA	inter
CUST_42092_PI429285431	0.88293415	A	0.9152851	A	0.977825578660154	0	lncRNA	44031-1_{1..97}	ENST00000385008 ncrna:miRNA chromosome:GRCh37:7:73605528:73605624:1 gene:ENSG00000207741 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385008 ncrna:miRNA chromosome:GRCh37:7:73605528:73605624:1 gene:ENSG00000207741 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 73605528	 73605624	+	ENSG00000207741	ENST00000385008	NA	NA	EIF4H	NA	chr7:73595528-73611429	inner
CUST_36997_PI429285431	4.53684	P	4.894818	P	0.780257378413427	0	lncRNA	38139-2_{3001..4810}	n345455|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1004|NULL|-1.2821400|-0.2723123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345455|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1004|NULL|-1.2821400|-0.2723123	chr1	113503102	113504911	+	NA	NA	NA	NA	SLC16A1	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.21;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-21.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40chr1:113490102-113498975"	NA	inter
CUST_3083_PI429285431	0.88935083	A	0.997374	A	0.92785857473862	0	lncRNA	3062-1_{1..273}	"transcript_id ""ENST00000523523.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523523.1"" | genecode_v17"	chr8	 39433113	 39433385	+	ENSG00000254082.1	ENST00000523523.1	CTD-2024D23.1	CTD-2024D23.1-002	ADAM18	NA	chr8:39442087-39447653	inter
CUST_5668_PI429285431	1.5724783	A	1.1941991	A	1.29979058228949	0	lncRNA	5594-1_{1..474}	"transcript_id ""ENST00000599411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599411.1"" | genecode_v17"	chr16	 86015356	 86015829	+	ENSG00000269667.1	ENST00000599411.1	RP11-542M13.2	RP11-542M13.2-001	NA	"hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60"	NA	inter
CUST_39728_PI429285431	0.89319265	A	1.0581019	A	0.89198462625949	0	lncRNA	40657-2_{3001..4095}	n405693|NR_002930|lncRNA|Homosapiens||RefGeneNoncode|NR_002930||7.0824000|-0.1021310	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405693|NR_002930|lncRNA|Homosapiens||RefGeneNoncode|NR_002930||7.0824000|-0.1021310	chr1	202140178	202141272	+	NA	NA	NA	NA	LGR6	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40chr1:202163118-202168577"	NA	inter
CUST_46101_PI429285431	0.8966912	A	0.8962396	A	1.00031307426426	0	lncRNA	50365-1_{1..3000}	"gi|223555999|ref|NR_026836.1| Homo sapiens TRHDE antisense RNA 1 (TRHDE-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223555999|ref|NR_026836.1| Homo sapiens TRHDE antisense RNA 1 (TRHDE-AS1), transcript variant 2, non-coding RNA"	Chr12	 72656327	 72659326	-	283392	NR_026836.1	NA	NA	NA	"hg19_refFlat_TRHDE:range=chr12:72666559-730569755'pad=0,hg19_refFlat_TRHDE:range=chr12:72666559-730569755'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.20"	NA	inter
CUST_39931_PI429285431	8.017573	P	7.5217676	P	1.41010774324043	0	lncRNA	40809-1_{1..1859}	n406813|NR_024249|lncRNA|Homosapiens||RefGeneNoncode|NR_024249||1.8003900|-0.1510144	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406813|NR_024249|lncRNA|Homosapiens||RefGeneNoncode|NR_024249||1.8003900|-0.1510144	chr11	 67559237	 67561095	-	NA	NA	NA	NA	NA	"hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0 3'pad=0 strand=- repeatMasking=none,-95.60;hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.60"	NA	inter
CUST_34938_PI429285431	3.8075042	P	4.6787186	P	0.546686479214485	0	lncRNA	36356-1_{1..2240}	n341855|AK024736|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4335|NULL|-0.4129820|-0.2489745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341855|AK024736|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4335|NULL|-0.4129820|-0.2489745	chr6	 43963459	 43965698	-	NA	NA	NA	NA	C6orf223	"hg19_refFlat_C6orf223:range=chr6:43968357-439708635'pad=0,hg19_refFlat_C6orf223:range=chr6:43968357-439708635'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10chr6:43968337-43973695"	NA	inner
LNCA_21_P0001562	0.8824841	A	0.88604945	A	0.997531738878044	0	lncRNA	ENST00000447322	NA	NA	NA	NA	XLOC_000945	NA	ENST00000447322	NA	NA	"BROAD Institute lincRNA (XLOC_000945), lincRNA [TCONS_00001614]"	chr1:103971921-103961391	hs|1p21.1	Agilent_HUMAN_G3V2	ENST00000447322	ENST00000447322	chr1	103961391	103971921	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22177_PI429285431	2.7571502	A	2.1255398	A	1.54929341851357	0	lncRNA	23779-1_{1..461}	lnc-GPT2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPT2-3:1	chr16	 47196462	 47196922	+	lnc-GPT2-3	lnc-GPT2-3:1	ENSG00000260281.1	RP11-329J18.2	ITFG1	"hg19_refFlat_ITFG1:range=chr16:47189630-474949565'pad=0,hg19_refFlat_ITFG1:range=chr16:47189630-474949565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50chr16:47189297-47206658"	NA	inner
CUST_50824_PI429285431	1.5153282	A	2.1297762	A	0.65317976357988	0	lncRNA	54473-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00004561 range=chr11:65222665-65229598 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004561 range=chr11:65222665-65229598 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65225665	 65228664	+	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-26.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60"	NA	inter
CUST_3072_PI429285431	3.0735729	P	1.8685535	A	2.30540369428027	0	lncRNA	3051-1_{1..578}	"transcript_id ""ENST00000520431.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520431.1"" | genecode_v17"	chr8	 37262957	 37263534	-	ENSG00000253746.1	ENST00000520431.1	RP11-527N22.2	RP11-527N22.2-001	NA	NA	NA	inter
LNCA_21_P0014806	4.19778	P	4.04845	P	1.10905429808542	0	lncRNA	XR_132626	XR_132626	XR_132626	NA	NA	LOC100507131	uncharacterized LOC100507131	NA	THC2479237	NA	"PREDICTED: Homo sapiens hypothetical LOC100507131 (LOC100507131), miscRNA [XR_132626]"	chr17:17762375-17762316	hs|17p11.2	Agilent_HUMAN_G3V2	XR_132626	XR_132626	chr17	 17762316	 17762375	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48466_PI429285431	6.2608366	P	6.2378664	P	1.01604915548304	0	lncRNA	52318-1_{1..1272}	hg19_lincRNAsTranscripts_TCONS_l2_00001804 range=chr1:224139118-224142371 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001804 range=chr1:224139118-224142371 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	224139118	224140389	-	NA	NA	NA	NA	LOC441124	NA	chr1:224133977-224141141	inter
CUST_28480_PI429285431	0.89427626	A	0.90005934	A	0.995999497817511	0	lncRNA	30147-1_{1..333}	n325822|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000106282|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000106282|-1.1956500|-0.4375427	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325822|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000106282|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000106282|-1.1956500|-0.4375427	chr11	116189129	116189461	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23858_PI429285431	0.89681727	A	0.90809333	A	0.992214496066893	0	lncRNA	25420-2_{3001..4275}	lnc-TMEM55A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-TMEM55A-2:2	chr8	 92085159	 92086433	-	lnc-TMEM55A-2	lnc-TMEM55A-2:2	ENSG00000253738.1	GS1-251I9.4	OTUD6B	NA	chr8:92082424-92092351	inter
CUST_46873_PI429285431	5.767372	P	6.1558657	P	0.763926794731852	0	lncRNA	51002-2_{3001..6000}	"gi|373838808|ref|NR_046055.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 31, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373838808|ref|NR_046055.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 31, non-coding RNA"	Chr17	 48641429	 48644428	+	8913	NR_046055.1	NA	NA	NA	NA	NA	inter
CUST_29007_PI429285431	1.37684	A	1.8177747	A	0.736657185107522	0	lncRNA	30731-1_{1..459}	n326491|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030357|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030357|-1.2716600|-0.4583687	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326491|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030357|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030357|-1.2716600|-0.4583687	chr1	106271768	106272226	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37736_PI429285431	10.40953	P	10.479208	P	0.952850644279937	0	lncRNA	38829-1_{1..551}	n346237|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1787|NULL|-1.6430100|-0.2072280	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346237|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1787|NULL|-1.6430100|-0.2072280	chr9	 41948827	 41949377	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43452_PI429285431	3.5864227	P	2.832459	A	1.6864197875489	0	lncRNA	48258-1_{1..3000}	"gi|371123532|ref|NR_045790.1| Homo sapiens NOP2/Sun domain family, member 4 (NSUN4), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371123532|ref|NR_045790.1| Homo sapiens NOP2/Sun domain family, member 4 (NSUN4), transcript variant 5, non-coding RNA"	Chr1	 46805849	 46808848	+	387338	NR_045790.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20"	NA	inter
CUST_37572_PI429285431	0.9119744	A	0.9142566	A	0.998419350049615	0	lncRNA	38675-1_{1..3000}	n346049|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1599|NULL|-1.4031100|-0.2732249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346049|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1599|NULL|-1.4031100|-0.2732249	chr14	 38662412	 38665411	+	NA	NA	NA	NA	SSTR1	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-29.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60chr14:38677204-38682268"	NA	inter
CUST_4926_PI429285431	0.89492697	A	0.8901785	A	1.00329681115953	0	lncRNA	4869-1_{1..736}	"transcript_id ""ENST00000553668.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553668.1"" | genecode_v17"	chr14	 86450290	 86451025	+	ENSG00000258733.1	ENST00000553668.1	CTD-2341M24.1	CTD-2341M24.1-002	NA	NA	NA	inter
CUST_1672_PI429285431	0.89796233	A	0.9276568	A	0.979627738496913	0	lncRNA	1657-1_{1..3000}	"transcript_id ""ENST00000510175.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510175.1"" | genecode_v17"	chr4	   124420	   127419	+	ENSG00000250312.2	ENST00000510175.1	ZNF718	ZNF718-002	ZNF718	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90chr4:124420-156491"	NA	inner
CUST_46261_PI429285431	3.4157767	P	3.3570151	P	1.041571298996	0	lncRNA	50500-1_{1..935}	"gi|300796405|ref|NR_034119.1| Homo sapiens long intergenic non-protein coding RNA 460 (LINC00460), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300796405|ref|NR_034119.1| Homo sapiens long intergenic non-protein coding RNA 460 (LINC00460), non-coding RNA"	Chr13	107028911	107029845	+	728192	NR_034119.1	NA	NA	NA	NA	NA	inter
CUST_46084_PI429285431	3.2522907	P	2.4775634	A	1.71086663067408	0	lncRNA	50353-3_{6001..9000}	"gi|398303861|ref|NR_073055.1| Homo sapiens solute carrier family 16, member 7 (monocarboxylic acid transporter 2) (SLC16A7), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|398303861|ref|NR_073055.1| Homo sapiens solute carrier family 16, member 7 (monocarboxylic acid transporter 2) (SLC16A7), transcript variant 4, non-coding RNA"	Chr12	 60089118	 60092117	+	9194	NR_073055.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00"	NA	inter
CUST_13510_PI429285431	0.880939	A	0.8849535	A	0.997221228595999	0	lncRNA	15150-1_{1..735}	lnc-DAAM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DAAM1-1:1	chr14	 59595625	 59596359	+	lnc-DAAM1-1	lnc-DAAM1-1:1	XLOC_010847	linc-DAAM1-1	NA	NA	NA	inter
CUST_674_PI429285431	3.0769649	A	3.471501	A	0.760733952042228	0	lncRNA	667-1_{1..411}	"transcript_id ""ENST00000450397.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450397.1"" | genecode_v17"	chr2	  5950773	  5951183	-	ENSG00000237266.1	ENST00000450397.1	AC010729.3	AC010729.3-001	NA	NA	NA	inter
CUST_24374_PI429285431	3.9043016	P	4.508903	P	0.65765305695815	0	lncRNA	25927-1_{1..1103}	lnc-ERAL1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ERAL1-3:2	chr17	 27224799	 27225901	+	lnc-ERAL1-3	lnc-ERAL1-3:2	ENSG00000266642.1	RP11-20B24.4	PHF12	"hg19_refFlat_DHRS13:range=chr17:27225459-272299625'pad=0,hg19_refFlat_DHRS13:range=chr17:27225459-272299625'pad=0 3'pad=0 strand=- repeatMasking=none,-100.50chr17:27232271-27235901"	NA	inner
CUST_14203_PI429285431	0.9195442	A	0.92639583	A	0.995262071545025	0	lncRNA	15855-2_{3001..4735}	lnc-PROP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PROP1-2:1	chr5	177392447	177394181	-	lnc-PROP1-2	lnc-PROP1-2:1	XLOC_005099	linc-FAM153A-2	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
LNCA_21_P0003080	0.88651526	A	0.8870304	A	0.99964299590254	0	lncRNA	TCONS_00006350	NA	NA	NA	NA	XLOC_002969	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002969), lincRNA [TCONS_00006350]"	chr3:191471065-191471124	hs|3q28	Agilent_HUMAN_G3V2	TCONS_00006350	TCONS_00006350	chr3	191471065	191471124	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44869_PI429285431	0.88199586	A	0.88318336	A	0.999177226387069	0	lncRNA	49393-1_{1..1356}	"gi|393290868|ref|NR_072989.1| Homo sapiens monocyte to macrophage differentiation-associated 2 (MMD2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393290868|ref|NR_072989.1| Homo sapiens monocyte to macrophage differentiation-associated 2 (MMD2), transcript variant 4, non-coding RNA"	Chr7	  4931876	  4933231	-	221938	NR_072989.1	NA	NA	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10"	NA	inter
CUST_41539_PI429285431	0.8805243	A	0.88236535	A	0.998724695276347	0	lncRNA	42809-1_{1..68}	ENST00000580663 ncrna:miRNA chromosome:GRCh37:5:1309425:1309492:-1 gene:ENSG00000263670 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580663 ncrna:miRNA chromosome:GRCh37:5:1309425:1309492:-1 gene:ENSG00000263670 gene_biotype:miRNA transcript_biotype:miRNA	chr5	  1309425	  1309492	-	ENSG00000263670	ENST00000580663	NA	NA	CLPTM1L	NA	chr5:1317999-1319492	inter
CUST_11068_PI429285431	2.5003655	A	1.6430378	A	1.81167943201549	0	lncRNA	12620-1_{1..3000}	lnc-LCP2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-LCP2-2:4	chr5	169624756	169627755	-	lnc-LCP2-2	lnc-LCP2-2:4	XLOC_005077	linc-FAM196B	NA	NA	NA	inter
CUST_52013_PI429285431	1.676986	A	1.4656667	A	1.15774642326909	0	lncRNA	55543-1_{1..624}	hg19_lincRNAsTranscripts_TCONS_l2_00017418 range=chr21:15219080-15220526 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017418 range=chr21:15219080-15220526 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 15219080	 15219703	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16656_PI429285431	3.1103795	A	3.084398	A	1.01817214343262	0	lncRNA	18358-1_{1..822}	lnc-PROM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PROM1-1:1	chr4	 16122440	 16123261	-	lnc-PROM1-1	lnc-PROM1-1:1	XLOC_003895	linc-PROM1	NA	NA	NA	inter
CUST_7356_PI429285431	0.8821443	A	0.9194702	A	0.974459478879111	0	lncRNA	9002-1_{1..2532}	lnc-METTL23-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-METTL23-1:1	chr17	 74733009	 74735540	+	lnc-METTL23-1	lnc-METTL23-1:1	ENSG00000251282	ENST00000508921	MFSD11	"hg19_refFlat_SRSF8:range=chr11:94800391-948012385'pad=0,hg19_refFlat_SRSF8:range=chr11:94800391-948012385'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_SRSF2:range=chr17:74732243-747332425'pad=0,hg19_refFlat_SRSF2:range=chr17:74732243-747332425'pad=0 3'pad=0 strand=- repeatMasking=none,-100.00chr17:74732647-74743413"	NA	inner
CUST_18228_PI429285431	6.475725	P	6.9685593	P	0.710627635676844	0	lncRNA	19963-1_{1..2652}	lnc-FAM160A1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-FAM160A1-5:3	chr4	152888148	152890799	+	lnc-FAM160A1-5	lnc-FAM160A1-5:3	ENSG00000251249	RP11-73G16.1	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00"	NA	inter
CUST_3254_PI429285431	0.8995298	A	0.8989309	A	1.0004152120231	0	lncRNA	3233-1_{1..770}	"transcript_id ""ENST00000519337.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519337.1"" | genecode_v17"	chr8	103866683	103867452	+	ENSG00000253385.1	ENST00000519337.1	KB-1254G8.1	KB-1254G8.1-001	AZIN1	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-28.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70chr8:103856683-103876397"	NA	inner
LNCA_21_P0007953	0.88455844	A	0.88676393	A	0.998472438735977	0	lncRNA	ENST00000424926	NA	NA	NA	NA	XLOC_010460	NA	ENST00000424926	NA	NA	"BROAD Institute lincRNA (XLOC_010460), lincRNA [TCONS_00021580]"	chr13:86118531-86118590	hs|13q31.1	Agilent_HUMAN_G3V2	ENST00000424926	ENST00000424926	chr13	 86118531	 86118590	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21867_PI429285431	7.647545	P	7.7425957	P	0.936239345007078	0	lncRNA	23477-1_{1..732}	lnc-GLUD1-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLUD1-4:6	chr10	 89101999	 89102730	-	lnc-GLUD1-4	lnc-GLUD1-4:6	ENSG00000223482.1	RP11-322M19.1	NA	NA	NA	inter
CUST_196_PI429201921	1.1093794	A	0.9242555	A	1.1369146083338	0	lncRNA	158-1_{1..3000}	TC09002522.hg.1	 TCONS_l2_00029288-XLOC_l2_015176 // Broad TUCP // linc-ANKRD20A2-4 chr9:-:43185431-43188152 // chr9 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00029287-XLOC_l2_015176 // Broad TUCP // linc-ANKRD20A2-4 chr9:-:43184316-43187301 // chr9 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00029289-XLOC_l2_015176 // Broad TUCP // linc-ANKRD20A2-4 chr9:-:43185439-43189410 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:-:43184316-43187301	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00029287-XLOC_l2_015176	linc-ANKRD20A2-4	chr9	 43184316	 43187301	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15615_PI429285431	2.511431	A	2.2487187	A	1.19973210980596	0	lncRNA	17302-1_{1..1970}	lnc-CHMP7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CHMP7-1:2	chr8	 23087461	 23089430	+	lnc-CHMP7-1	lnc-CHMP7-1:2	XLOC_006742	linc-CHMP7	TNFRSF10A	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60chr8:23077461-23082680"	NA	inter
CUST_7425_PI429285431	1.0772022	A	0.988719	A	1.06325172826677	0	lncRNA	9067-2_{3001..4997}	lnc-PNMA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PNMA2-1:1	chr8	 26230188	 26232184	-	lnc-PNMA2-1	lnc-PNMA2-1:1	ENSG00000245176	ENST00000500096	PPP2R2A	"hg19_refFlat_PPP2R2A:range=chr8:26150763-262279295'pad=0,hg19_refFlat_PPP2R2A:range=chr8:26150763-262279295'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPP2R2A:range=chr8:26149336-262279295'pad=0,hg19_refFlat_PPP2R2A:range=chr8:26149336-262279295'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20chr8:26217188-26230196"	NA	inner
CUST_19774_PI429285431	4.7549233	P	5.15055	P	0.760159095322181	0	lncRNA	21432-1_{1..239}	lnc-FZD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FZD4-1:1	chr11	 86636018	 86636256	-	lnc-FZD4-1	lnc-FZD4-1:1	ENSG00000255471.1	RP11-736K20.5	NA	NA	NA	inter
CUST_45343_PI429285431	0.899236	A	0.9038722	A	0.996791589027553	0	lncRNA	49781-1_{1..2204}	"gi|341916039|ref|XR_132821.1| PREDICTED: Homo sapiens contactin associated protein-like 3 pseudogene (LOC441402), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341916039|ref|XR_132821.1| PREDICTED: Homo sapiens contactin associated protein-like 3 pseudogene (LOC441402), misc_RNA"	Chr9	 40498821	 40501024	-	441402	XR_132821.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0009544	8.090955	P	8.006711	P	1.06013206615885	0	lncRNA	TCONS_00026486	NA	NA	NA	NA	XLOC_012812	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012812), lincRNA [TCONS_00026486]"	chr18:33025576-33025517	hs|18q12.2	Agilent_HUMAN_G3V2	TCONS_00026486	TCONS_00026486	chr18	 33025517	 33025576	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008222	1.3436062	A	1.7999725	A	0.728819618750224	0	lncRNA	BC034786	NA	BC034786	NA	Hs.382313	XLOC_010732	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010732), lincRNA [TCONS_00022317]"	chr13:112925867-112925808	hs|13q34	Agilent_HUMAN_G3V2	BC034786	BC034786	chr13	112925808	112925867	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20854_PI429285431	7.9202347	P	7.5629835	P	1.28098288482329	0	lncRNA	22485-1_{1..525}	lnc-CFC1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CFC1-2:2	chr2	131513256	131513780	-	lnc-CFC1-2	lnc-CFC1-2:2	ENSG00000229797.1	AC140481.8	FAM123C	NA	chr2:131513077-131523408	inner
CUST_51068_PI429285431	0.8986552	A	1.8516644	A	0.516553899791074	0	lncRNA	54705-1_{1..1398}	hg19_lincRNAsTranscripts_TCONS_l2_00006780 range=chr13:32520191-32534889 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006780 range=chr13:32520191-32534889 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 32520191	 32521588	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8467_PI429285431	6.2008753	P	6.040486	P	1.11758866996986	0	lncRNA	10034-1_{1..3000}	lnc-CCL18-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCL18-2:1	chr17	 34313570	 34316569	+	lnc-CCL18-2	lnc-CCL18-2:1	ENSG00000251502	ENST00000514091	CCL16	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_CCL14:range=chr17:34310837-343136855'pad=0,hg19_refFlat_CCL14:range=chr17:34310837-343136855'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40chr17:34303570-34308523"	NA	inter
CUST_17873_PI429285431	0.90118134	A	1.0992929	A	0.871690831258553	0	lncRNA	19610-1_{1..539}	lnc-MYEF2-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYEF2-4:5	chr15	 48138326	 48138864	-	lnc-MYEF2-4	lnc-MYEF2-4:5	XLOC_011470	linc-SLC30A4-4	NA	NA	NA	inter
CUST_50995_PI429285431	7.8507366	P	8.279586	P	0.742854001300951	0	lncRNA	54640-1_{1..1125}	hg19_lincRNAsTranscripts_TCONS_l2_00006556 range=chr12:133179686-133187238 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006556 range=chr12:133179686-133187238 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	133179686	133180810	-	NA	NA	NA	NA	LOC100507055	NA	chr12:133179736-133187037	inner
CUST_19569_PI429285431	0.9148245	A	0.9138851	A	1.00065135450069	0	lncRNA	21225-1_{1..1378}	lnc-FSIP1-5:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FSIP1-5:6	chr15	 39410851	 39412228	-	lnc-FSIP1-5	lnc-FSIP1-5:6	ENSG00000259345.1	RP11-624L4.1	NA	NA	NA	inter
CUST_50289_PI429285431	0.9054712	A	1.0166764	A	0.925814331070312	0	lncRNA	54008-1_{1..314}	hg19_lincRNAsTranscripts_TCONS_l2_00028844 range=chr9:76067630-76069915 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028844 range=chr9:76067630-76069915 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 76067630	 76067943	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4325_PI429285431	1.5983187	A	1.6675043	A	0.953175913114012	0	lncRNA	4280-1_{1..543}	"transcript_id ""ENST00000549140.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549140.1"" | genecode_v17"	chr12	 74432866	 74433408	+	ENSG00000258332.1	ENST00000549140.1	RP11-711C17.2	RP11-711C17.2-001	NA	NA	NA	inter
CUST_47149_PI429285431	3.7172718	P	3.1881819	A	1.44301860422255	0	lncRNA	51230-1_{1..3000}	"gi|296531370|ref|NR_033680.1| Homo sapiens caspase recruitment domain family, member 8 (CARD8), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|296531370|ref|NR_033680.1| Homo sapiens caspase recruitment domain family, member 8 (CARD8), transcript variant 9, non-coding RNA"	Chr19	 48711343	 48714342	-	22900	NR_033680.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10"	NA	inter
CUST_1652_PI429285431	0.92443085	A	1.7429262	A	0.567033017995288	0	lncRNA	1637-1_{1..694}	"transcript_id ""ENST00000594976.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594976.1"" | genecode_v17"	chr3	195435025	195435718	+	ENSG00000242086.3	ENST00000594976.1	AC069513.3	AC069513.3-028	MUC20	NA	chr3:195447753-195459688	inner
CUST_25797_PI429285431	0.90885377	A	0.9078808	A	1.00067463887878	0	lncRNA	27318-1_{1..416}	lnc-HECA-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HECA-1:2	chr6	139608147	139608562	+	lnc-HECA-1	lnc-HECA-1:2	ENSG00000226571.1	RP11-445F6.2	TXLNB	NA	chr6:139598147-139613208	inner
CUST_24920_PI429285431	1.0952009	A	0.9125367	A	1.13497789527972	0	lncRNA	26461-1_{1..432}	lnc-FZD3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FZD3-1:2	chr8	 28313141	 28313572	+	lnc-FZD3-1	lnc-FZD3-1:2	ENSG00000253567.1	RP11-181B11.2	FBXO16	NA	chr8:28303141-28323419	inner
CUST_31891_PI429285431	6.881993	P	5.6866155	P	2.29004746363562	0	lncRNA	33623-1_{1..1182}	n338446|BC016000|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|843|NULL|-1.2745900|-0.3891055	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338446|BC016000|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|843|NULL|-1.2745900|-0.3891055	chr1	200374082	200375263	-	NA	NA	NA	NA	ZNF281	NA	chr1:200375420-200379166	inter
CUST_24400_PI429285431	0.8844312	A	0.8923028	A	0.994558680554393	0	lncRNA	25953-1_{1..347}	lnc-CLN5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLN5-2:1	chr13	 77661685	 77662031	+	lnc-CLN5-2	lnc-CLN5-2:1	ENSG00000236051.1	MYCBP2-AS1	MYCBP2	"hg19_refFlat_MYCBP2:range=chr13:77619513-779009105'pad=0,hg19_refFlat_MYCBP2:range=chr13:77619513-779009105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr13:77651685-77671911"	NA	inner
CUST_9088_PI429285431	3.1082065	A	2.613278	A	1.40925091090316	0	lncRNA	10609-1_{1..838}	lnc-BHLHB9-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-BHLHB9-1:3	chrX	102094729	102095566	+	lnc-BHLHB9-1	lnc-BHLHB9-1:3	ENSG00000223546	LL0XNC01-157D4.1	NA	NA	NA	inter
CUST_47585_PI429285431	1.4577223	A	0.8892025	A	1.48300123579436	0	lncRNA	51589-1_{1..3000}	"gi|224493659|ref|NR_027121.1| Homo sapiens shroom family member 4 (SHROOM4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224493659|ref|NR_027121.1| Homo sapiens shroom family member 4 (SHROOM4), transcript variant 2, non-coding RNA"	NW_004070877.1	   304757	   307756	-	57477	NR_027121.1	NA	NA	NA	"hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.67;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20"	NA	Unknown
LNCA_21_P0011688	1.8235884	A	2.3899658	A	0.675310362192305	0	lncRNA	ENST00000531821	NA	BC046415	NA	Hs.655305	ZNF726	zinc finger protein 726	ENST00000531821	NA	GO:0005622|GO:0006355|GO:0008270|GO:0005634|GO:0003677|GO:0046872	"BROAD Institute lincRNA (XLOC_l2_006671), lincRNA [TCONS_l2_00012430]"	chr19:24103105-24103164	hs|19p12	Agilent_HUMAN_G3V2	ENST00000531821	ENST00000531821	chr19	 24103105	 24103164	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51979_PI429285431	4.087437	P	4.5041447	P	0.74913223121205	0	lncRNA	55517-2_{3001..5002}	hg19_lincRNAsTranscripts_TCONS_l2_00016362 range=chr20:58658544-58676498 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016362 range=chr20:58658544-58676498 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 58661544	 58663545	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17927_PI429285431	7.9008856	P	7.965887	P	0.955944389939069	0	lncRNA	19659-1_{1..237}	lnc-TUBGCP3-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TUBGCP3-6:2	chr13	112849131	112849367	-	lnc-TUBGCP3-6	lnc-TUBGCP3-6:2	XLOC_010730	linc-ANKRD10-8	NA	NA	NA	inter
LNCA_21_P0013136	6.3693714	P	6.838935	P	0.722183017453772	0	lncRNA	ENST00000420601	NA	NA	NA	NA	XLOC_l2_012791	NA	ENST00000420601	THC2690691	NA	"BROAD Institute lincRNA (XLOC_l2_012791), lincRNA [TCONS_l2_00025281]"	chr6:161347521-161347580	hs|6q26	Agilent_HUMAN_G3V2	ENST00000420601	ENST00000420601	chr6	161347521	161347580	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42413_PI429285431	13.146575	P	13.409365	P	0.833474519637632	0	lncRNA	45123-1_{1..92}	ENST00000384549 ncrna:snoRNA chromosome:GRCh37:15:25339184:25339275:1 gene:ENSG00000207279 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384549 ncrna:snoRNA chromosome:GRCh37:15:25339184:25339275:1 gene:ENSG00000207279 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 25339184	 25339275	+	ENSG00000207279	ENST00000384549	NA	NA	SNRPN	NA	chr15:25329184-25349275	inter
CUST_33193_PI429285431	1.1589596	A	2.875887	A	0.304195897166924	0	lncRNA	34785-1_{1..747}	n339887|BC070479|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2335|NULL|0.5528180|-0.2677481	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339887|BC070479|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2335|NULL|0.5528180|-0.2677481	chr4	 21701948	 21702694	-	NA	NA	NA	NA	KCNIP4	NA	chr4:21691948-21815365	inner
CUST_19139_PI429285431	7.2327943	P	7.541545	P	0.807340572187959	0	lncRNA	20814-1_{1..1506}	lnc-CDKN1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDKN1A-1:1	NA	NA	     1505	NA	NA	NA	NA	NA	NA	"hg19_refFlat_LAP3:range=chr4:17579089-176092125'pad=0,hg19_refFlat_LAP3:range=chr4:17579089-176092125'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90"	NA	Unknown
CUST_787_PI429285431	8.598587	P	8.721199	P	0.918523157719801	0	lncRNA	780-1_{1..626}	"transcript_id ""ENST00000449124.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449124.1"" | genecode_v17"	chr2	 19244622	 19245247	-	ENSG00000236204.1	ENST00000449124.1	AC092594.1	AC092594.1-003	OSR1	NA	chr2:19551246-19556509	inter
CUST_23463_PI429285431	0.8864713	A	1.3901248	A	0.705318360089364	0	lncRNA	25030-1_{1..436}	lnc-IRS2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IRS2-3:1	chr13	109753929	109754364	-	lnc-IRS2-3	lnc-IRS2-3:1	ENSG00000229938.1	MYO16-AS2	MYO16	NA	chr13:109743929-109764267	inner
LNCA_21_P0009215	1.7676954	A	2.3065662	A	0.688309439322641	0	lncRNA	TCONS_00025293	NA	NA	NA	NA	XLOC_012095	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012095), lincRNA [TCONS_00025293]"	chr17:6857482-6857541	hs|17p13.1	Agilent_HUMAN_G3V2	TCONS_00025293	TCONS_00025293	chr17	  6857482	  6857541	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20756_PI429285431	1.134818	A	1.500514	A	0.776094373124652	0	lncRNA	22389-2_{3001..3881}	lnc-CAPN3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CAPN3-1:3	chr15	 42706945	 42707825	+	lnc-CAPN3-1	lnc-CAPN3-1:3	ENSG00000258461.1	RP11-164J13.1	ZFP106	NA	chr15:42705021-42714515	inner
CUST_2671_PI429285431	1.1030132	A	1.4785563	A	0.770815186064394	0	lncRNA	2657-1_{1..442}	"transcript_id ""ENST00000456715.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456715.1"" | genecode_v17"	chr6	153115631	153116072	-	ENSG00000224893.1	ENST00000456715.1	RP1-200K18.1	RP1-200K18.1-001	NA	NA	NA	inter
CUST_17609_PI429285431	2.4102242	P	2.6289313	A	0.859335201884951	0	lncRNA	19332-1_{1..686}	lnc-ACTRT2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACTRT2-1:2	chr1	  2734021	  2734706	+	lnc-ACTRT2-1	lnc-ACTRT2-1:2	XLOC_000027	linc-ACTRT2-1	NA	NA	NA	inter
LNCA_21_P0005662	0.8818542	A	0.88232726	A	0.999672153548161	0	lncRNA	THC2643084	NA	NA	NA	NA	XLOC_006726	NA	NA	THC2643084	NA	"BROAD Institute lincRNA (XLOC_006726), lincRNA [TCONS_00014633]"	chr8:017679447-017679506	hs|8p22	Agilent_HUMAN_G3V2	THC2643084	THC2643084	chr8	 17679447	 17679506	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14394_PI429285431	2.376873	A	1.3953052	A	1.97461008411684	0	lncRNA	16056-1_{1..1848}	lnc-ZCCHC24-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZCCHC24-3:4	chr10	 80737616	 80739463	-	lnc-ZCCHC24-3	lnc-ZCCHC24-3:4	XLOC_008863	linc-POLR3A-1	NA	NA	NA	inter
LNCA_21_P0004497	0.88434863	A	1.867063	A	0.506026775614122	0	lncRNA	TCONS_00010660	NA	NA	NA	NA	XLOC_004325	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004325), lincRNA [TCONS_00010660]"	chr5:29165141-29169692	hs|5p13.3	Agilent_HUMAN_G3V2	TCONS_00010660	TCONS_00010660	chr5	 29165141	 29169692	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19175_PI429285431	1.5637857	A	1.5014473	A	1.04415681717316	0	lncRNA	20844-1_{1..590}	lnc-AC096644.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC096644.1-3:1	chr1	220836363	220836952	-	lnc-AC096644.1-3	lnc-AC096644.1-3:1	ENSG00000225782.1	RP11-322F10.2	MARK1	NA	chr1:220826363-220837799	inner
CUST_48751_PI429285431	4.9093933	P	5.44308	P	0.690787221217805	0	lncRNA	52588-1_{1..306}	hg19_lincRNAsTranscripts_TCONS_l2_00014004 range=chr2:136756386-136758291 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014004 range=chr2:136756386-136758291 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	136756386	136756691	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15569_PI429285431	0.8806616	A	0.880563	A	1.00006834664753	0	lncRNA	17254-1_{1..2247}	lnc-FAM20C-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-FAM20C-6:2	chr7	   420815	   423061	+	lnc-FAM20C-6	lnc-FAM20C-6:2	XLOC_005956	linc-HEATR2-4	NA	NA	NA	inter
LNCA_21_P0007759	0.8873795	A	0.8883506	A	0.999327111264192	0	lncRNA	TCONS_00020921	NA	NA	NA	NA	XLOC_010199	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010199), lincRNA [TCONS_00020921]"	chr12:111450106-111450047	hs|12q24.11	Agilent_HUMAN_G3V2	TCONS_00020921	TCONS_00020921	chr12	111450047	111450106	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_140_PI429285431	1.1367471	A	1.1183369	A	1.01284274695229	0	lncRNA	131-1_{1..280}	"transcript_id ""ENST00000415573.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415573.1"" | genecode_v17"	chr1	  2977853	  2978132	-	ENSG00000177133.5	ENST00000415573.1	RP1-163G9.1	RP1-163G9.1-006	PRDM16	NA	chr1:2985742-2990246	inter
CUST_15190_PI429285431	1.7827146	A	1.8516209	A	0.953360462028655	0	lncRNA	16858-1_{1..484}	lnc-VWDE-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VWDE-3:1	chr7	 12714294	 12714777	-	lnc-VWDE-3	lnc-VWDE-3:1	XLOC_006356	linc-VWDE-1	NA	NA	NA	inter
CUST_46368_PI429285431	2.76615	A	1.3596964	A	2.65084736013662	0	lncRNA	50589-2_{3001..6000}	"gi|258613864|ref|NR_028467.1| Homo sapiens ataxin 3 (ATXN3), transcript variant z, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|258613864|ref|NR_028467.1| Homo sapiens ataxin 3 (ATXN3), transcript variant z, non-coding RNA"	Chr14	 92527896	 92530895	-	4287	NR_028467.1	NA	NA	NA	"hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
LNCA_21_P0011098	4.135658	P	3.97197	P	1.12014694286917	0	lncRNA	TCONS_l2_00006293	NA	NA	NA	NA	XLOC_l2_003401	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003401), lincRNA [TCONS_l2_00006293]"	chr12:62072181-62072122	hs|12q14.1	Agilent_HUMAN_G3V2	TCONS_l2_00006293	TCONS_l2_00006293	chr12	 62072122	 62072181	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001406	1.1167573	A	2.3946183	A	0.412406506709576	0	lncRNA	TCONS_00001247	NA	NA	NA	NA	XLOC_000529	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000529), lincRNA [TCONS_00001247]"	chr1:203368340-203368399	hs|1q32.1	Agilent_HUMAN_G3V2	TCONS_00001247	TCONS_00001247	chr1	203368340	203368399	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48656_PI429285431	0.9050994	A	0.89641553	A	1.00603735179268	0	lncRNA	52502-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00013801 range=chr2:95874411-95889565 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013801 range=chr2:95874411-95889565 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 95874411	 95877410	+	NA	NA	NA	NA	PROM2	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr2:95864411-95899565"	NA	inter
CUST_47203_PI429285431	3.2826219	P	2.0559168	A	2.34031885157452	0	lncRNA	51277-2_{3001..3613}	"gi|400154056|ref|NR_073102.1| Homo sapiens zinc finger protein 551 (ZNF551), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|400154056|ref|NR_073102.1| Homo sapiens zinc finger protein 551 (ZNF551), transcript variant 3, non-coding RNA"	Chr19	 58196337	 58196949	+	90233	NR_073102.1	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70"	NA	inter
CUST_19468_PI429285431	0.9008182	A	1.0523195	A	0.900313089486215	0	lncRNA	21126-1_{1..545}	lnc-BOD1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BOD1-4:1	chr5	173513401	173513945	-	lnc-BOD1-4	lnc-BOD1-4:1	ENSG00000253447.1	RP11-619L12.4	HMP19	NA	chr5:173503401-173523562	inner
CUST_238_PI429285431	0.89198023	A	0.9032515	A	0.992217790398122	0	lncRNA	230-1_{1..731}	"transcript_id ""ENST00000435828.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435828.1"" | genecode_v17"	chr1	 56611393	 56612123	+	ENSG00000235612.1	ENST00000435828.1	RP1-158P9.1	RP1-158P9.1-001	NA	NA	NA	inter
CUST_30083_PI429285431	0.9081471	A	0.9115074	A	0.997673527969877	0	lncRNA	31855-1_{1..252}	n334607|U82306|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221753|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221753|1.4425900|-0.2538109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334607|U82306|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221753|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221753|1.4425900|-0.2538109	chr13	 25715794	 25716045	+	NA	NA	NA	NA	C13orf41	NA	chr13:25705794-25716046	inter
CUST_42965_PI429285431	6.2751284	P	6.2577453	P	1.01212192894439	0	lncRNA	46106-1_{1..74}	ENST00000408813 ncrna:snoRNA chromosome:GRCh37:7:22896232:22896305:1 gene:ENSG00000221740 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408813 ncrna:snoRNA chromosome:GRCh37:7:22896232:22896305:1 gene:ENSG00000221740 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 22896232	 22896305	+	ENSG00000221740	ENST00000408813	NA	NA	NA	NA	NA	inter
CUST_13462_PI429285431	1.3372194	A	1.0450029	A	1.22452013789831	0	lncRNA	15100-1_{1..671}	lnc-AKR1E2-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AKR1E2-5:3	chr10	  4089273	  4089943	+	lnc-AKR1E2-5	lnc-AKR1E2-5:3	XLOC_008358	linc-AKR1E2-5	NA	NA	NA	inter
CUST_49462_PI429285431	4.624451	P	4.541562	P	1.05913684226245	0	lncRNA	53259-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00024862 range=chr6:107165125-107235381 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024862 range=chr6:107165125-107235381 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	107165125	107168124	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50"	NA	inter
CUST_16424_PI429285431	1.1942562	A	0.90232337	A	1.22427939022115	0	lncRNA	18123-1_{1..708}	lnc-CTC-236F12.4.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTC-236F12.4.1-4:1	chr5	 55840668	 55841375	-	lnc-CTC-236F12.4.1-4	lnc-CTC-236F12.4.1-4:1	XLOC_004832	linc-ANKRD55-2	NA	NA	NA	inter
CUST_37566_PI429285431	4.379805	P	3.8353932	A	1.45842560951191	0	lncRNA	38668-1_{1..1556}	n346042|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1592|NULL|-1.3036300|-0.2388893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346042|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1592|NULL|-1.3036300|-0.2388893	chr3	125546161	125547716	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3271_PI429285431	0.89657235	A	0.90212953	A	0.996155465569723	0	lncRNA	3249-1_{1..456}	"transcript_id ""ENST00000522390.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522390.1"" | genecode_v17"	chr8	112754241	112754696	+	ENSG00000254262.1	ENST00000522390.1	RP11-58O3.2	RP11-58O3.2-001	NA	NA	NA	inter
LNCA_21_P0013011	0.905061	A	0.927336	A	0.984678730002127	0	lncRNA	ENST00000439891	NA	NA	NA	NA	XLOC_l2_012388	NA	ENST00000439891	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012388), lincRNA [TCONS_l2_00024019]"	chr6:8330079-8330138	hs|6p24.3	Agilent_HUMAN_G3V2	ENST00000439891	ENST00000439891	chr6	  8330079	  8330138	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49375_PI429285431	8.437598	P	7.4992003	P	1.91639864696862	0	lncRNA	53189-1_{1..541}	hg19_lincRNAsTranscripts_TCONS_l2_00022494 range=chr5:119015892-119016527 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022494 range=chr5:119015892-119016527 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	119015892	119016432	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27403_PI429285431	0.91165566	A	0.9167358	A	0.996484907734587	0	lncRNA	28967-1_{1..327}	n324568|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039992|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039992|-0.9777870|-0.4100948	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324568|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039992|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039992|-0.9777870|-0.4100948	chr6	 22164753	 22165079	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_24_P194661	0.90601873	A	0.9274476	A	0.985256406199027	0	lncRNA	XR_108456	XR_108456	XR_108456	   285097	Hs.653239	FLJ38379	uncharacterized FLJ38379	NA	THC2478609	NA	"PREDICTED: Homo sapiens hypothetical FLJ38379 (FLJ38379), miscRNA [XR_108456]"	chr2:242947571-242947630	hs|2q37.3	Agilent_HUMAN_G3V2	XR_108456	XR_108456	chr2	242947571	242947630	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19455_PI429285431	0.91229177	A	0.9258004	A	0.990680231972939	0	lncRNA	21114-1_{1..484}	lnc-SUSD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SUSD1-2:1	chr9	114681037	114681520	-	lnc-SUSD1-2	lnc-SUSD1-2:1	ENSG00000203564.2	RP11-570D4.2	UGCG	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80chr9:114671037-114691204"	NA	inner
CUST_41332_PI429285431	5.158301	P	5.2519507	P	0.937148967881529	0	lncRNA	42386-1_{1..69}	ENST00000580425 ncrna:miRNA chromosome:GRCh37:17:27717680:27717748:1 gene:ENSG00000263719 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580425 ncrna:miRNA chromosome:GRCh37:17:27717680:27717748:1 gene:ENSG00000263719 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 27717680	 27717748	+	ENSG00000263719	ENST00000580425	NA	NA	TAOK1	NA	chr17:27717943-27727748	inter
LNCA_21_P0012127	0.90672916	A	0.9264239	A	0.98644140365671	0	lncRNA	TCONS_l2_00016335	NA	NA	NA	NA	XLOC_l2_008667	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008667), lincRNA [TCONS_l2_00016335]"	chr20:51069031-51069090	hs|20q13.2	Agilent_HUMAN_G3V2	TCONS_l2_00016335	TCONS_l2_00016335	chr20	 51069031	 51069090	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42216_PI429285431	0.92400086	A	0.9611029	A	0.974610695468891	0	lncRNA	44317-1_{1..78}	ENST00000583498 ncrna:miRNA chromosome:GRCh37:3:69098109:69098186:-1 gene:ENSG00000265355 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583498 ncrna:miRNA chromosome:GRCh37:3:69098109:69098186:-1 gene:ENSG00000265355 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 69098109	 69098186	-	ENSG00000265355	ENST00000583498	NA	NA	TMF1	NA	chr3:69088109-69101484	inner
CUST_33468_PI429285431	11.913477	P	11.668549	P	1.18503362847007	0	lncRNA	35041-1_{1..654}	n340203|BC017993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2664|NULL|-1.2469600|-0.3269338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n340203|BC017993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2664|NULL|-1.2469600|-0.3269338	chr4	119199913	119200566	+	NA	NA	NA	NA	PRSS12	NA	chr4:119201193-119210974	inter
CUST_36587_PI429285431	5.545604	P	5.765233	P	0.858786251459169	0	lncRNA	37781-1_{1..361}	n345083|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_632|NULL|-1.3628100|-0.2949054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345083|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_632|NULL|-1.3628100|-0.2949054	chrX	 45911403	 45911763	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010349	5.649066	P	5.702715	P	0.963496279006659	0	lncRNA	ENST00000430468	NA	NA	NA	NA	XLOC_014194	NA	ENST00000430468	THC2669956	NA	"BROAD Institute lincRNA (XLOC_014194), lincRNA [TCONS_00029399]"	chr22:27555781-27555840	hs|22q12.1	Agilent_HUMAN_G3V2	ENST00000430468	ENST00000430468	chr22	 27555781	 27555840	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33375_PI429285431	1.2267541	A	1.3915108	A	0.892078949345968	0	lncRNA	34954-1_{1..1017}	n340092|AF143878|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2547|NULL|-1.2425200|-0.4870205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340092|AF143878|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2547|NULL|-1.2425200|-0.4870205	chr4	 70701485	 70702501	-	NA	NA	NA	NA	SULT1E1	NA	chr4:70706930-70712486	inter
LNCA_21_P0002408	0.90442616	A	0.9208107	A	0.988707348414768	0	lncRNA	TCONS_00004157	NA	NA	NA	NA	XLOC_002003	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002003), lincRNA [TCONS_00004157]"	chr2:18606381-18606322	hs|2p24.2	Agilent_HUMAN_G3V2	TCONS_00004157	TCONS_00004157	chr2	 18606322	 18606381	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007550	4.807078	P	5.2847247	P	0.718148100277117	0	lncRNA	ENST00000546738	NA	AK128157	NA	Hs.382689	XLOC_009733	NA	ENST00000546738	THC2629346	NA	"BROAD Institute lincRNA (XLOC_009733), lincRNA [TCONS_00020405]"	chr12:48405182-48405241	hs|12q13.11	Agilent_HUMAN_G3V2	ENST00000546738	ENST00000546738	chr12	 48405182	 48405241	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5501_PI429285431	1.9183722	A	2.9608846	A	0.485481289429405	0	lncRNA	5433-1_{1..685}	"transcript_id ""ENST00000564165.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564165.1"" | genecode_v17"	chr16	 33057850	 33058534	-	ENSG00000260141.1	ENST00000564165.1	RP11-19N8.4	RP11-19N8.4-002	LOC653550	NA	chr16:33047850-33116752	inter
CUST_257_PI429201921	0.9234176	A	0.9530651	A	0.97965963287695	0	lncRNA	191-1_{1..3000}	TC17002111.hg.1	TCONS_l2_00011533-XLOC_l2_005698 // Broad TUCP // linc-CDRT15L2-3 chr17:+:20328041-20334520 // chr17 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr17:+:20328041-20334520	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00011533-XLOC_l2_005698	linc-CDRT15L2-3	chr17	 20328041	 20334520	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7447_PI429285431	6.6658225	P	6.86314	P	0.872170742344032	0	lncRNA	9090-2_{3001..4674}	lnc-ZNF708-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF708-2:1	chr19	 21649546	 21651219	-	lnc-ZNF708-2	lnc-ZNF708-2:1	ENSG00000249756	AC010615.2	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20"	NA	inter
CUST_12551_PI429285431	2.8328466	A	2.6057074	A	1.17051157410849	0	lncRNA	14162-1_{1..694}	lnc-ZNF71-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF71-3:1	chr19	 57359320	 57360013	+	lnc-ZNF71-3	lnc-ZNF71-3:1	XLOC_013173	linc-USP29-1	ZIM2	NA	chr19:57349320-57352097	inter
CUST_14960_PI429285431	1.067833	A	0.9035132	A	1.1206375966835	0	lncRNA	16623-1_{1..955}	lnc-GPCPD1-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPCPD1-1:12	chr20	  5469588	  5470542	-	lnc-GPCPD1-1	lnc-GPCPD1-1:12	XLOC_013643	linc-PROKR2-4	NA	NA	NA	inter
CUST_39321_PI429285431	2.0497003	A	0.90523165	A	2.21064696710997	0	lncRNA	40287-2_{3001..3134}	n386362|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ijm.1||-1.2965300|-0.4023579	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386362|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ijm.1||-1.2965300|-0.4023579	chr4	 79837383	 79837516	+	NA	NA	NA	NA	BMP2K	NA	chr4:79824383-79833341	inter
CUST_51541_PI429285431	3.3254068	P	3.2526085	P	1.05175472542457	0	lncRNA	55108-1_{1..2350}	hg19_lincRNAsTranscripts_TCONS_l2_00010542 range=chr17:6757541-6803656 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010542 range=chr17:6757541-6803656 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	  6757541	  6759890	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41843_PI429285431	5.723197	P	6.032274	P	0.807157993449975	0	lncRNA	43476-1_{1..83}	ENST00000582167 ncrna:miRNA chromosome:GRCh37:X:49771262:49771344:1 gene:ENSG00000265152 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582167 ncrna:miRNA chromosome:GRCh37:X:49771262:49771344:1 gene:ENSG00000265152 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 49771262	 49771344	+	ENSG00000265152	ENST00000582167	NA	NA	CLCN5	NA	chrX:49761262-49781344	inner
CUST_9659_PI429285431	4.6479826	P	5.2406163	P	0.663131227670918	0	lncRNA	11176-1_{1..566}	lnc-ATG2B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATG2B-3:1	chr14	 97473838	 97474403	-	lnc-ATG2B-3	lnc-ATG2B-3:1	XLOC_011115	linc-ATG2B-3	NA	NA	NA	inter
CUST_15443_PI429285431	0.87959784	A	0.8853449	A	0.996024365408206	0	lncRNA	17131-1_{1..949}	lnc-CLEC2A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLEC2A-1:3	chr12	 10095729	 10096677	-	lnc-CLEC2A-1	lnc-CLEC2A-1:3	XLOC_010013	linc-CLEC2A	CLEC12A	NA	chr12:10103915-10106034	inter
CUST_34722_PI429285431	0.8946216	A	0.90648353	A	0.991811645378921	0	lncRNA	36168-1_{1..719}	n341628|BC013641|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4099|NULL|-0.9986500|-0.1022793	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341628|BC013641|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4099|NULL|-0.9986500|-0.1022793	chr8	143701733	143702451	+	NA	NA	NA	NA	ARC	NA	chr8:143692410-143695833	inter
LNCA_21_P0003226	6.392655	P	6.699878	P	0.808195934832594	0	lncRNA	TCONS_00006818	NA	NA	NA	NA	XLOC_002624	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002624), lincRNA [TCONS_00006818]"	chr3:42055576-42075355	hs|3p22.1	Agilent_HUMAN_G3V2	TCONS_00006818	TCONS_00006818	chr3	 42055576	 42075355	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39306_PI429285431	7.529409	P	7.9607425	P	0.741576020992282	0	lncRNA	40273-1_{1..2280}	n386316|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gty.2||6.0739300|-0.1480897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386316|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gty.2||6.0739300|-0.1480897	chr22	 23604894	 23607173	+	NA	NA	NA	NA	BCR	NA	chr22:23594894-23617174	inner
CUST_2219_PI429285431	0.8877687	A	0.8849624	A	1.00194707202061	0	lncRNA	2211-1_{1..415}	"transcript_id ""ENST00000446516.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446516.2"" | genecode_v17"	chr5	 84408160	 84408574	-	ENSG00000249349.1	ENST00000446516.2	CTC-384G19.1	CTC-384G19.1-001	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70"	NA	inter
CUST_6800_PI429285431	5.6640253	P	5.6551013	P	1.00620481605122	0	lncRNA	6748-1_{1..480}	"transcript_id ""ENST00000416182.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416182.1"" | genecode_v17"	chr21	 23027359	 23027838	-	ENSG00000237527.1	ENST00000416182.1	AF241725.6	AF241725.6-001	NA	NA	NA	inter
CUST_17629_PI429285431	0.8985035	A	0.9023055	A	0.997368123894251	0	lncRNA	19354-1_{1..508}	lnc-RASA1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASA1-4:1	chr5	 87642711	 87643218	+	lnc-RASA1-4	lnc-RASA1-4:1	XLOC_004458	linc-POLR3G-9	NA	NA	NA	inter
CUST_45490_PI429285431	0.8915385	A	0.88789934	A	1.00252565760659	0	lncRNA	49902-1_{1..435}	"gi|310120432|ref|XR_109002.1| PREDICTED: Homo sapiens uncharacterized LOC100507059 (LOC100507059), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120432|ref|XR_109002.1| PREDICTED: Homo sapiens uncharacterized LOC100507059 (LOC100507059), misc_RNA"	Chr10	  4448652	  4449086	+	100507059	XR_109002.2	NA	NA	NA	NA	NA	inter
CUST_48000_PI429285431	9.086524	P	9.712277	P	0.648081429525406	0	lncRNA	51885-1_{1..2559}	"gi|410173213|ref|XR_172153.1| PREDICTED: Homo sapiens cerebellar degeneration-related protein 2-like (LOC101060399), partial misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173213|ref|XR_172153.1| PREDICTED: Homo sapiens cerebellar degeneration-related protein 2-like (LOC101060399), partial misc_RNA"	NA	NA	NA	NA	NA	XR_172153.1	NA	NA	NA	NA	NA	Unknown
CUST_48713_PI429285431	1.6562121	A	1.6993475	A	0.970543377933456	0	lncRNA	52555-1_{1..1125}	hg19_lincRNAsTranscripts_TCONS_l2_00013965 range=chr2:127782107-127788497 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013965 range=chr2:127782107-127788497 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	127782107	127783231	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014151	0.8831227	A	1.997643	A	0.461844694446248	0	lncRNA	XR_108264	XR_108264	XR_108264	NA	NA	LOC100506851	uncharacterized LOC100506851	NA	THC2657980	NA	"PREDICTED: Homo sapiens hypothetical LOC100506851 (LOC100506851), miscRNA [XR_108264]"	chr6:80131100-80131159	hs|6q14.1	Agilent_HUMAN_G3V2	XR_108264	XR_108264	chr6	 80131100	 80131159	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14573_PI429285431	4.9176087	P	5.317368	P	0.757984735278452	0	lncRNA	16239-1_{1..1355}	lnc-SLC44A3-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC44A3-1:6	chr1	 95428535	 95429889	+	lnc-SLC44A3-1	lnc-SLC44A3-1:6	XLOC_000304	linc-TMEM56-3	NA	NA	NA	inter
CUST_308_PI429285431	8.034291	P	8.007628	P	1.01865322100644	0	lncRNA	300-1_{1..2375}	"transcript_id ""ENST00000467438.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000467438.1"" | genecode_v17"	chr1	 87597658	 87600032	+	ENSG00000267272.1	ENST00000467438.1	RP5-1052I5.1	RP5-1052I5.1-004	NA	NA	NA	inter
CUST_39558_PI429285431	2.5209846	A	3.1976936	P	0.625590712624978	0	lncRNA	40502-1_{1..692}	n387500|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011fvc.1||-0.9402570|-0.2798115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387500|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011fvc.1||-0.9402570|-0.2798115	chr6	  1267559	  1268250	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34085_PI429285431	1.2927654	A	1.1609138	A	1.09569905371346	0	lncRNA	35614-1_{1..2241}	n340910|AK054979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3375|NULL|-0.7775490|-0.1800986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340910|AK054979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3375|NULL|-0.7775490|-0.1800986	chr17	 77264922	 77267162	-	NA	NA	NA	NA	RBFOX3	NA	chr17:77254922-77277167	inner
CUST_45578_PI429285431	0.89314485	A	0.89799106	A	0.996646498790109	0	lncRNA	49972-1_{1..794}	"gi|397139368|ref|XR_110548.2| PREDICTED: Homo sapiens uncharacterized LOC100506853 (LOC100506853), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139368|ref|XR_110548.2| PREDICTED: Homo sapiens uncharacterized LOC100506853 (LOC100506853), misc_RNA"	NA	NA	NA	NA	NA	XR_110548.2	NA	NA	NA	NA	NA	Unknown
CUST_31682_PI429285431	1.4974114	A	1.048575	A	1.36493892656493	0	lncRNA	33429-1_{1..1549}	n338208|AK125759|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|600|NULL|-1.0175500|-0.2849786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n338208|AK125759|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|600|NULL|-1.0175500|-0.2849786	chr1	119683332	119684880	+	NA	NA	NA	NA	WARS2	NA	chr1:119673332-119683295	inter
CUST_46320_PI429285431	0.889197	A	0.8987976	A	0.993367464186605	0	lncRNA	50549-1_{1..2043}	"gi|395455076|ref|NR_073034.1| Homo sapiens orthodenticle homeobox 2 (OTX2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|395455076|ref|NR_073034.1| Homo sapiens orthodenticle homeobox 2 (OTX2), transcript variant 6, non-coding RNA"	Chr14	 57267425	 57269467	-	5015	NR_073034.1	NA	NA	NA	NA	NA	inter
CUST_8923_PI429285431	0.8930291	A	0.88493246	A	1.00562794087768	0	lncRNA	10458-1_{1..2234}	lnc-C6orf228-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C6orf228-2:1	chr6	 11204110	 11206343	+	lnc-C6orf228-2	lnc-C6orf228-2:1	ENSG00000249190	ENST00000513971	NEDD9	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NEDD9:range=chr6:11201214-112327485'pad=0,hg19_refFlat_NEDD9:range=chr6:11201214-112327485'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00chr6:11194110-11215155"	NA	inter
CUST_22507_PI429285431	2.5610895	A	2.9160352	A	0.781899071607514	0	lncRNA	24094-1_{1..405}	lnc-PRR15L-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRR15L-5:3	chr17	 46018702	 46019106	-	lnc-PRR15L-5	lnc-PRR15L-5:3	ENSG00000234494.2	AC003665.1	PNPO	NA	chr17:46018889-46026674	inter
CUST_36403_PI429285431	0.88100505	A	0.8799337	A	1.00074287902994	0	lncRNA	37621-1_{1..261}	n344920|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_469|NULL|-1.4824900|-0.4310995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344920|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_469|NULL|-1.4824900|-0.4310995	chr6	106234292	106234552	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39512_PI429285431	4.079162	P	3.9430132	P	1.09896755957601	0	lncRNA	40458-1_{1..723}	n387297|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011bsz.1||-1.0351300|-0.2207574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387297|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011bsz.1||-1.0351300|-0.2207574	chr3	195372408	195373130	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00320384	9.720083	P	9.837105	P	0.922089056649964	0	lncRNA	ENST00000380336	XR_110931	XR_110931	NA	Hs.722573	NA	0	ENST00000380336	THC2496281	NA	"PREDICTED: Homo sapiens hypothetical LOC100506661 (LOC100506661), miscRNA [XR_110931]"	chrX:15715760-15715819	hs|Xp22.2	Agilent_HUMAN_G3V2	ENST00000380336	ENST00000380336	chrX	 15715760	 15715819	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33951_PI429285431	2.7626169	A	1.0306267	A	3.32185753143235	0	lncRNA	35491-1_{1..2604}	n340753|CR590425|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3216|NULL|-1.3159900|-0.3782068	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340753|CR590425|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3216|NULL|-1.3159900|-0.3782068	chr17	 53239053	 53241656	+	NA	NA	NA	NA	STXBP4	NA	chr17:53229053-53241449	inner
CUST_3134_PI429285431	0.9669359	A	1.5480087	A	0.668466515285956	0	lncRNA	3113-1_{1..529}	"transcript_id ""ENST00000373384.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000373384.4"" | genecode_v17"	chr8	 61573379	 61573907	+	ENSG00000255289.1	ENST00000373384.4	RP11-91I20.1	RP11-91I20.1-001	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40"	NA	inter
CUST_48589_PI429285431	5.1270847	P	5.166727	P	0.972896136159493	0	lncRNA	52436-1_{1..457}	hg19_lincRNAsTranscripts_TCONS_l2_00014470 range=chr2:21863681-21872403 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014470 range=chr2:21863681-21872403 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 21863681	 21864137	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48874_PI429285431	4.2230706	P	4.7288303	P	0.704289412432711	0	lncRNA	52710-1_{1..678}	hg19_lincRNAsTranscripts_TCONS_l2_00018503 range=chr3:38462818-38467813 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018503 range=chr3:38462818-38467813 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	 38462818	 38463495	+	NA	NA	NA	NA	XYLB	NA	chr3:38452818-38456467	inter
CUST_2795_PI429285431	2.1322403	A	2.102426	A	1.02088071210671	0	lncRNA	2779-1_{1..427}	"transcript_id ""ENST00000579437.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579437.1"" | genecode_v17"	chr7	 30589833	 30590259	+	ENSG00000263683.1	ENST00000579437.1	RP4-777O23.1	RP4-777O23.1-001	NA	NA	NA	inter
LNCA_21_P0006047	2.2003856	A	2.5896266	A	0.763531191608766	0	lncRNA	ENST00000456032	NA	NA	NA	NA	XLOC_007540	NA	ENST00000456032	NA	NA	"BROAD Institute lincRNA (XLOC_007540), lincRNA [TCONS_00015743]"	chr9:121507496-121507555	hs|9q33.1	Agilent_HUMAN_G3V2	ENST00000456032	ENST00000456032	chr9	121507496	121507555	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5846_PI429285431	0.9272069	A	2.151075	A	0.428133283045921	0	lncRNA	5775-1_{1..1453}	"transcript_id ""ENST00000602403.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602403.1"" | genecode_v17"	chr17	 38459457	 38460909	+	ENSG00000270145.1	ENST00000602403.1	CTD-2267D19.6	CTD-2267D19.6-001	CDC6	NA	chr17:38449457-38459413	inter
CUST_30383_PI429285431	0.8761388	A	0.87923574	A	0.997855667144294	0	lncRNA	32159-1_{1..212}	n335496|BC055094|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259495_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259495_07|-1.2190500|-0.4300245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335496|BC055094|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259495_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259495_07|-1.2190500|-0.4300245	chr6	  2835533	  2835744	-	NA	NA	NA	NA	SERPINB1	NA	chr6:2833733-2842081	inter
CUST_3956_PI429285431	0.87704223	A	0.8792935	A	0.998440755433744	0	lncRNA	3926-1_{1..385}	"transcript_id ""ENST00000533106.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533106.1"" | genecode_v17"	chr11	 59927160	 59927544	-	ENSG00000254952.1	ENST00000533106.1	AP001257.1	AP001257.1-001	NA	NA	NA	inter
CUST_50707_PI429285431	3.9245045	P	3.5141745	P	1.32898977055101	0	lncRNA	54378-1_{1..1016}	hg19_lincRNAsTranscripts_TCONS_l2_00003647 range=chr10:81557176-81574579 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003647 range=chr10:81557176-81574579 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 81557176	 81558191	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008764	0.8841494	A	0.88436896	A	0.99984782418495	0	lncRNA	THC2674693	NA	NA	NA	NA	XLOC_011544	NA	NA	THC2674693	NA	"BROAD Institute lincRNA (XLOC_011544), lincRNA [TCONS_00023753]"	chr15:080613151-080613092	hs|15q25.1	Agilent_HUMAN_G3V2	THC2674693	THC2674693	chr15	 80613092	 80613151	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4404_PI429285431	2.722877	A	3.3199563	A	0.661090963668916	0	lncRNA	4354-1_{1..581}	"transcript_id ""ENST00000551161.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551161.1"" | genecode_v17"	chr12	111269583	111270163	+	ENSG00000257268.1	ENST00000551161.1	RP1-74B13.2	RP1-74B13.2-001	CCDC63	"hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90chr12:111279361-111293767"	NA	inter
LNCA_21_P0004058	4.256806	P	4.1616096	P	1.06821081807501	0	lncRNA	ENST00000509456	NA	NA	NA	NA	XLOC_004535	NA	ENST00000509456	NA	NA	"BROAD Institute lincRNA (XLOC_004535), lincRNA [TCONS_00009501]"	chr5:124255757-124257264	hs|5q23.2	Agilent_HUMAN_G3V2	ENST00000509456	ENST00000509456	chr5	124255757	124257264	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45553_PI429285431	9.91731	P	8.197956	P	3.29288927174083	0	lncRNA	49952-2_{3001..5692}	"gi|350276251|ref|NR_045259.1| Homo sapiens neuropilin 1 (NRP1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|350276251|ref|NR_045259.1| Homo sapiens neuropilin 1 (NRP1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NR_045259.1	NA	NA	NA	NA	NA	Unknown
CUST_13200_PI429285431	1.2303431	A	1.278187	A	0.967380994840987	0	lncRNA	14828-1_{1..552}	lnc-CMPK2-11:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMPK2-11:2	chr2	  5951753	  5952304	-	lnc-CMPK2-11	lnc-CMPK2-11:2	XLOC_001960	linc-RNASEH1-10	NA	NA	NA	inter
CUST_33409_PI429285431	1.2668822	A	0.9116653	A	1.27917788305939	0	lncRNA	34988-1_{1..2339}	n340133|BC043279|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2592|NULL|-1.2890000|-0.3331779	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340133|BC043279|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2592|NULL|-1.2890000|-0.3331779	chr4	 79694808	 79697146	-	NA	NA	NA	NA	BMP2K	"hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr4:79689603-79707124"	NA	inter
CUST_24232_PI429285431	0.8908125	A	1.5515653	A	0.632548146475842	0	lncRNA	25783-1_{1..563}	lnc-BOLA3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-BOLA3-1:2	chr2	 74208236	 74208798	-	lnc-BOLA3-1	lnc-BOLA3-1:2	ENSG00000237883.1	DGUOK-AS1	NA	"hg19_refFlat_DGUOK:range=chr2:74154038-741858635'pad=0,hg19_refFlat_DGUOK:range=chr2:74154038-741858635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90"	NA	inter
CUST_20405_PI429285431	1.3413783	A	0.8961715	A	1.36150926511314	0	lncRNA	22047-1_{1..775}	lnc-AC012652.1.1-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC012652.1.1-1:12	chr15	 41579551	 41580325	+	lnc-AC012652.1.1-1	lnc-AC012652.1.1-1:12	ENSG00000247556.2	OIP5-AS1	CHP	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-11.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.90chr15:41569551-41574085"	NA	inter
LNCA_21_P0011596	2.2593567	A	1.5117353	A	1.67902230976145	0	lncRNA	TCONS_l2_00011353	NA	NA	NA	NA	XLOC_l2_006138	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006138), lincRNA [TCONS_l2_00011353]"	chr17:53588701-53588642	hs|17q22	Agilent_HUMAN_G3V2	TCONS_l2_00011353	TCONS_l2_00011353	chr17	 53588642	 53588701	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006685	4.30562	P	4.286672	P	1.01322037933676	0	lncRNA	ENST00000441348	NA	NA	NA	NA	XLOC_008512	NA	ENST00000441348	NA	NA	"BROAD Institute lincRNA (XLOC_008512), lincRNA [TCONS_00017841]"	chr10:73638795-73638854	hs|10q22.1	Agilent_HUMAN_G3V2	ENST00000441348	ENST00000441348	chr10	 73638795	 73638854	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9896_PI429285431	0.8935336	A	0.9079707	A	0.990042868614223	0	lncRNA	11420-1_{1..385}	lnc-CTDSP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTDSP2-3:1	chr12	 58484638	 58485022	-	lnc-CTDSP2-3	lnc-CTDSP2-3:1	XLOC_010103	linc-CTDSP2-4	NA	NA	NA	inter
CUST_45742_PI429285431	0.8939053	A	1.0719203	A	0.883918340733309	0	lncRNA	50091-1_{1..3000}	"gi|338827714|ref|NR_040083.1| Homo sapiens zinc finger protein 195 (ZNF195), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338827714|ref|NR_040083.1| Homo sapiens zinc finger protein 195 (ZNF195), transcript variant 7, non-coding RNA"	Chr11	  3379157	  3382156	-	7748	NR_040083.1	NA	NA	NA	NA	NA	inter
CUST_10332_PI429285431	1.8045118	A	2.9600945	P	0.448884846642136	0	lncRNA	11860-1_{1..473}	lnc-ABHD2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABHD2-1:6	chr15	 89622668	 89623140	+	lnc-ABHD2-1	lnc-ABHD2-1:6	XLOC_011344	linc-ABHD2	ABHD2	NA	chr15:89631381-89632992	inter
CUST_30105_PI429285431	7.231393	P	6.3891473	P	1.79283870479899	0	lncRNA	31877-1_{1..346}	n334648|AB114415|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000242352|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000242352|1.0034400|-0.2518230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334648|AB114415|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000242352|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000242352|1.0034400|-0.2518230	chr3	 25760877	 25761222	-	NA	NA	NA	NA	NGLY1	NA	chr3:25750877-25771223	inner
CUST_31356_PI429285431	6.7958612	P	7.4658103	P	0.628528862116876	0	lncRNA	33137-1_{1..3000}	n337823|AL832136|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|206|NULL|-0.4031620|-0.3340190	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337823|AL832136|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|206|NULL|-0.4031620|-0.3340190	chrX	107963178	107966177	-	NA	NA	NA	NA	IRS4	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20chrX:107975727-107978174"	NA	inter
CUST_22902_PI429285431	18.333237	P	18.28518	P	1.0338715830759	0	lncRNA	24479-1_{1..127}	lnc-TSN-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TSN-3:1	chr2	122288457	122288583	+	lnc-TSN-3	lnc-TSN-3:1	ENSG00000264229.1	RNU4ATAC	CLASP1	NA	chr2:122278457-122298583	inner
CUST_46701_PI429285431	9.768094	P	9.778311	P	0.992943132710236	0	lncRNA	50860-1_{1..2046}	"gi|371874408|ref|NR_045839.1| Homo sapiens ankyrin repeat domain 11 (ANKRD11), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371874408|ref|NR_045839.1| Homo sapiens ankyrin repeat domain 11 (ANKRD11), transcript variant 4, non-coding RNA"	Chr16	 89353066	 89355111	-	29123	NR_045839.1	NA	NA	NA	NA	NA	inter
CUST_6407_PI429285431	7.6740875	P	8.135813	P	0.726117284346975	0	lncRNA	6343-1_{1..1864}	"transcript_id ""ENST00000594934.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000594934.1"" | genecode_v17"	chr19	 24216247	 24218110	+	ENSG00000268362.1	ENST00000594934.1	CTD-2017D11.1	CTD-2017D11.1-001	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40"	NA	inter
CUST_27211_PI429285431	1.6591938	A	2.8287475	A	0.44455884429755	0	lncRNA	28753-1_{1..426}	n324343|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042617|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042617|-1.0739200|-0.1608347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324343|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042617|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042617|-1.0739200|-0.1608347	chr6	148496637	148497062	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49420_PI429285431	3.8458848	P	4.3970585	P	0.682464685476168	0	lncRNA	53224-1_{1..1244}	hg19_lincRNAsTranscripts_TCONS_l2_00023269 range=chr5:175602430-175612423 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023269 range=chr5:175602430-175612423 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175602430	175603673	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34310_PI429285431	9.590308	P	9.876197	P	0.820236017184409	0	lncRNA	35804-2_{3001..3221}	n341171|AL713633|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3637|NULL|5.8713700|-0.1178315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341171|AL713633|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3637|NULL|5.8713700|-0.1178315	chr7	  2294404	  2294624	-	NA	NA	NA	NA	FTSJ2	NA	chr7:2281404-2281833	inner
CUST_25997_PI429285431	1.2000299	A	1.61093	A	0.752153957095256	0	lncRNA	27516-1_{1..379}	lnc-C14orf28-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C14orf28-1:2	chr14	 45007477	 45007855	+	lnc-C14orf28-1	lnc-C14orf28-1:2	ENSG00000258747.1	RP11-163M18.1	NA	NA	NA	inter
CUST_646_PI429285431	3.3207567	A	2.7823706	A	1.45234691097135	0	lncRNA	638-1_{1..493}	"transcript_id ""ENST00000433724.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433724.1"" | genecode_v17"	chr2	   724966	   725458	-	ENSG00000227713.1	ENST00000433724.1	AC116609.1	AC116609.1-002	NA	NA	NA	inter
CUST_3923_PI429285431	2.7890148	A	3.1542284	P	0.776353922450594	0	lncRNA	3893-1_{1..584}	"transcript_id ""ENST00000527828.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527828.1"" | genecode_v17"	chr11	 42014935	 42015518	-	ENSG00000255300.1	ENST00000527828.1	RP11-148I19.1	RP11-148I19.1-001	NA	NA	NA	inter
CUST_3362_PI429285431	0.88482773	A	0.906131	A	0.985342185652053	0	lncRNA	3337-1_{1..572}	"transcript_id ""ENST00000419824.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419824.1"" | genecode_v17"	chr9	  8936079	  8936650	+	ENSG00000234021.1	ENST00000419824.1	RP11-75C9.2	RP11-75C9.2-001	PTPRD	NA	chr9:8926079-8973077	inner
CUST_21434_PI429285431	8.455169	P	8.456278	P	0.999231595151086	0	lncRNA	23053-1_{1..227}	lnc-SRGAP3-1:25	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRGAP3-1:25	chr3	  9404524	  9404750	-	lnc-SRGAP3-1	lnc-SRGAP3-1:25	ENSG00000254485.1	RP11-380O24.1	THUMPD3	NA	chr3:9404717-9414662	inter
CUST_8879_PI429285431	2.9598083	A	2.0648465	A	1.85956064671427	0	lncRNA	10416-1_{1..1112}	lnc-DBT-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DBT-2:1	chr1	100754752	100755863	-	lnc-DBT-2	lnc-DBT-2:1	ENSG00000246838	ENST00000500770	RTCD1	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_RTCA:range=chr1:100731932-1007570605'pad=0,hg19_refFlat_RTCA:range=chr1:100731932-1007570605'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50chr1:100744752-100758325"	NA	inner
CUST_23248_PI429285431	1.3239146	A	0.91685444	A	1.32598105220349	0	lncRNA	24820-1_{1..730}	lnc-CLDN16-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLDN16-2:1	chr3	189862395	189863124	+	lnc-CLDN16-2	lnc-CLDN16-2:1	ENSG00000225764.1	LEPREL1-AS1	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60"	NA	inter
CUST_23175_PI429285431	5.1603193	P	5.4338055	P	0.827317956190337	0	lncRNA	24747-1_{1..507}	lnc-MRTO4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRTO4-1:1	chr1	 19566751	 19567257	+	lnc-MRTO4-1	lnc-MRTO4-1:1	ENSG00000230424.1	RP1-43E13.2	KIAA0090	"hg19_refFlat_EMC1:range=chr1:19545797-195780035'pad=0,hg19_refFlat_EMC1:range=chr1:19545797-195780035'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30chr1:19556751-19577198"	NA	inner
CUST_23414_PI429285431	0.91058415	A	0.9123118	A	0.998803201009334	0	lncRNA	24982-1_{1..825}	lnc-HMHB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMHB1-1:1	chr5	143207892	143208716	+	lnc-HMHB1-1	lnc-HMHB1-1:1	ENSG00000249881.1	CTB-57H20.1	HMHB1	NA	chr5:143197892-143200284	inter
CUST_28654_PI429285431	2.7039847	A	3.4180813	P	0.609586728952666	0	lncRNA	30345-1_{1..517}	n326032|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047375|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047375|-0.2576850|-0.2281974	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326032|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047375|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047375|-0.2576850|-0.2281974	chr10	 29072679	 29073195	+	NA	NA	NA	NA	NA	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-65.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70"	NA	inter
CUST_28883_PI429285431	3.001235	P	3.660181	P	0.633340832332221	0	lncRNA	30598-1_{1..642}	n326305|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086350|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086350|-1.2206600|-0.3617576	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326305|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086350|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086350|-1.2206600|-0.3617576	chr1	183842938	183843579	-	NA	NA	NA	NA	RGL1	NA	chr1:183832938-183874282	inner
CUST_36508_PI429285431	3.3758688	P	3.3262475	P	1.03499320780724	0	lncRNA	37707-1_{1..915}	n345008|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_557|NULL|-1.3046800|-0.3832747	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345008|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_557|NULL|-1.3046800|-0.3832747	chr8	 91323727	 91324641	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24932_PI429285431	2.4696088	A	3.1380024	P	0.629206901388918	0	lncRNA	26472-1_{1..610}	lnc-SRSF2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRSF2-2:1	chr17	 74964966	 74965575	-	lnc-SRSF2-2	lnc-SRSF2-2:1	ENSG00000260180.1	RP11-87G24.3	NA	NA	NA	inter
CUST_23583_PI429285431	2.1114416	A	1.7862363	A	1.2528427093612	0	lncRNA	25150-1_{1..477}	lnc-RP11-422N16.3.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-422N16.3.1-4:1	chr8	112482610	112483086	+	lnc-RP11-422N16.3.1-4	lnc-RP11-422N16.3.1-4:1	ENSG00000253434.1	RP11-1101K5.1	NA	NA	NA	inter
LNCA_21_P0014186	3.3662639	P	3.3164394	P	1.03513899428701	0	lncRNA	XR_108747	XR_108747	XR_108747	NA	NA	LOC100506130	uncharacterized LOC100506130	NA	THC2612201	NA	"PREDICTED: Homo sapiens hypothetical LOC100506130, transcript variant 1 (LOC100506130), miscRNA [XR_108747]"	chr7:20368043-20367984	hs|7p21.1	Agilent_HUMAN_G3V2	XR_108747	XR_108747	chr7	 20367984	 20368043	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009440	0.89414686	A	0.9051319	A	0.992414665458296	0	lncRNA	TCONS_00026233	NA	NA	NA	NA	XLOC_012609	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012609), lincRNA [TCONS_00026233]"	chr18:2370925-2370984	hs|18p11.32	Agilent_HUMAN_G3V2	TCONS_00026233	TCONS_00026233	chr18	  2370925	  2370984	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21192_PI429285431	0.8833347	A	0.9240836	A	0.9721501752732	0	lncRNA	22818-1_{1..666}	lnc-RP1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP1-1:3	chr8	 55474264	 55474929	+	lnc-RP1-1	lnc-RP1-1:3	ENSG00000254142.1	RP11-53M11.3	RP1	NA	chr8:55464264-55484487	inter
CUST_44264_PI429285431	0.91078454	A	0.91957223	A	0.993927350974757	0	lncRNA	48905-1_{1..1827}	"gi|336285251|ref|NR_038455.1| Homo sapiens uncharacterized LOC100507389 (LOC100507389), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336285251|ref|NR_038455.1| Homo sapiens uncharacterized LOC100507389 (LOC100507389), non-coding RNA"	Chr3	142645517	142647343	+	100507389	NR_038455.1	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80"	NA	inter
CUST_30777_PI429285431	3.347325	A	3.7053404	P	0.780237151513853	0	lncRNA	32563-1_{1..420}	n336627|Z46760|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327272|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327272|2.8323400|-0.0502656	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336627|Z46760|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327272|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327272|2.8323400|-0.0502656	chr14	107034727	107035146	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29485_PI429285431	2.7209983	A	3.1506712	P	0.742430096252948	0	lncRNA	31243-1_{1..382}	n332909|AF086324|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067203|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067203|1.4558100|-0.0720203	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332909|AF086324|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067203|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067203|1.4558100|-0.0720203	chr22	 37887283	 37887664	-	NA	NA	NA	NA	MFNG	NA	chr22:37877283-37882478	inner
CUST_32662_PI429285431	6.0083256	P	4.7315493	P	2.42296959327656	0	lncRNA	34313-1_{1..1980}	n339287|AK027235|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1719|NULL|-0.6843180|-0.3290836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339287|AK027235|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1719|NULL|-0.6843180|-0.3290836	chr3	 33187317	 33189296	+	NA	NA	NA	NA	CRTAP	NA	chr3:33177317-33189265	inner
CUST_50226_PI429285431	1.3038925	A	1.1123604	A	1.1419758171132	0	lncRNA	53950-1_{1..557}	hg19_lincRNAsTranscripts_TCONS_l2_00029328 range=chr9:67272959-67280459 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029328 range=chr9:67272959-67280459 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 67272959	 67273515	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16253_PI429285431	5.5086484	P	6.035096	P	0.694262137777907	0	lncRNA	17957-1_{1..403}	lnc-WDR26-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR26-1:1	chr1	224803777	224804179	-	lnc-WDR26-1	lnc-WDR26-1:1	XLOC_001228	linc-WDR26-2	CNIH3	NA	chr1:224804179-224813922	inter
CUST_30927_PI429285431	0.88285804	A	1.442436	A	0.678500620440854	0	lncRNA	32715-1_{1..495}	n336984|BC107094|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338658|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338658|-1.4831800|-0.2831331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336984|BC107094|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338658|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338658|-1.4831800|-0.2831331	chr5	 96308104	 96308598	+	NA	NA	NA	NA	LNPEP	NA	chr5:96298104-96318599	inner
LNCA_21_P0009301	0.88474065	A	0.89095795	A	0.995699768621654	0	lncRNA	TCONS_00025573	NA	NA	NA	NA	XLOC_012398	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012398), lincRNA [TCONS_00025573]"	chr17:15317264-15317205	hs|17p12	Agilent_HUMAN_G3V2	TCONS_00025573	TCONS_00025573	chr17	 15317205	 15317264	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21428_PI429285431	4.664146	P	4.8869586	P	0.856893254358794	0	lncRNA	23047-1_{1..2582}	lnc-TIGD1L2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TIGD1L2-2:1	chr9	 32647704	 32650285	+	lnc-TIGD1L2-2	lnc-TIGD1L2-2:1	ENSG00000223440.1	RP11-555J4.4	NA	"hg19_refFlat_TAF1:range=chrX:70586165-706838965'pad=0,hg19_refFlat_TAF1:range=chrX:70586165-706838965'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_TAF1L:range=chr9:32630097-326355775'pad=0,hg19_refFlat_TAF1L:range=chr9:32630097-326355775'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60"	NA	inter
CUST_3189_PI429285431	0.9271843	A	1.1911674	A	0.832785526229089	0	lncRNA	3169-1_{1..3000}	"transcript_id ""ENST00000603837.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603837.1"" | genecode_v17"	chr8	 77316293	 77319292	+	ENSG00000271167.1	ENST00000603837.1	RP11-706J10.3	RP11-706J10.3-001	NA	NA	NA	inter
CUST_19889_PI429285431	2.7821262	A	2.0101755	A	1.70757707619525	0	lncRNA	21545-1_{1..365}	lnc-CEP170-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CEP170-1:7	chr1	243255781	243256145	-	lnc-CEP170-1	lnc-CEP170-1:7	ENSG00000214837.3	RP11-261C10.3	NA	NA	NA	inter
CUST_37150_PI429285431	1.2411166	A	2.2725496	A	0.489223971036341	0	lncRNA	38269-1_{1..3000}	n345588|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1137|NULL|-1.3811800|-0.2372082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345588|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1137|NULL|-1.3811800|-0.2372082	chr3	 37891173	 37894172	-	NA	NA	NA	NA	CTDSPL	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60chr3:37903669-37911300"	NA	inter
CUST_19997_PI429285431	0.8792616	A	1.80193	A	0.527532396658321	0	lncRNA	21650-1_{1..241}	lnc-EPHB6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EPHB6-1:1	chr7	142590058	142590298	+	lnc-EPHB6-1	lnc-EPHB6-1:1	ENSG00000224970.1	RP11-114L10.2	TRPV6	"hg19_refFlat_TRPV5:range=chr7:142605680-1426305565'pad=0,hg19_refFlat_TRPV5:range=chr7:142605680-1426305565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TRPV6:range=chr7:142569460-1425832615'pad=0,hg19_refFlat_TRPV6:range=chr7:142569460-1425832615'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10chr7:142580058-142583477"	NA	inter
CUST_50624_PI429285431	2.4887757	A	2.9717097	P	0.715520992712404	0	lncRNA	54308-1_{1..648}	hg19_lincRNAsTranscripts_TCONS_l2_00002879 range=chr10:7138249-7139627 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002879 range=chr10:7138249-7139627 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	  7138249	  7138896	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_68_PI429285431	4.168847	P	4.3105865	P	0.906425592084319	0	lncRNA	65-3_{6001..9000}	"transcript_id ""ENST00000488188.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000488188.2"" | genecode_v17"	chr17	 37919974	 37922973	-	ENSG00000264198.1	ENST00000488188.2	RP11-94L15.2	RP11-94L15.2-001	IKZF3	"hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_IKZF3:range=chr17:37922043-380203795'pad=0,hg19_refFlat_IKZF3:range=chr17:37922043-380203795'pad=0 3'pad=0 strand=- repeatMasking=none,-99.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60chr17:37921198-37930089"	NA	inter
CUST_113_PI429285431	5.917664	P	6.089088	P	0.887965789313187	0	lncRNA	105-1_{1..3000}	"transcript_id ""ENST00000416385.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416385.1"" | genecode_v17"	chr1	   677193	   680192	-	ENSG00000235373.1	ENST00000416385.1	RP11-206L10.3	RP11-206L10.3-001	NA	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-23.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90"	NA	inter
CUST_35456_PI429285431	6.1808577	P	5.1322455	P	2.06853905987793	0	lncRNA	36861-1_{1..3000}	n342531|D83077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5027|NULL|21.1024000|-0.3938899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n342531|D83077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5027|NULL|21.1024000|-0.3938899	chr21	 38455246	 38458245	+	NA	NA	NA	NA	TTC3	NA	chr21:38445571-38575408	inner
CUST_5016_PI429285431	0.896996	A	0.89023876	A	1.00469474781209	0	lncRNA	4956-1_{1..1176}	"transcript_id ""ENST00000553465.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553465.1"" | genecode_v17"	chr14	101364286	101365461	+	ENSG00000258399.1	ENST00000553465.1	MEG8	MEG8-001	NA	NA	NA	inter
LNCA_21_P0008689	1.8165807	A	2.629187	A	0.569352365070735	0	lncRNA	TCONS_00023542	NA	NA	NA	NA	XLOC_011375	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011375), lincRNA [TCONS_00023542]"	chr15:98115794-98115853	hs|15q26.2	Agilent_HUMAN_G3V2	TCONS_00023542	TCONS_00023542	chr15	 98115794	 98115853	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44529_PI429285431	4.485798	P	3.5569515	P	1.90375325050501	0	lncRNA	49123-1_{1..2944}	"gi|393185896|ref|NR_072980.1| Homo sapiens serine/threonine-protein kinase NIM1 (NIM1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393185896|ref|NR_072980.1| Homo sapiens serine/threonine-protein kinase NIM1 (NIM1), transcript variant 2, non-coding RNA"	Chr5	 43192954	 43195897	+	167359	NR_072980.1	NA	NA	NA	NA	NA	inter
CUST_34418_PI429285431	1.4277514	A	1.369687	A	1.04106806854964	0	lncRNA	35898-1_{1..925}	n341288|BC061919|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3757|NULL|-0.8636130|-0.1977145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341288|BC061919|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3757|NULL|-0.8636130|-0.1977145	chr7	104581652	104582576	+	NA	NA	NA	NA	NA	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70"	NA	inter
LNCA_21_P0006613	0.88236916	A	0.88260025	A	0.999839833446077	0	lncRNA	DD431415	NA	DD431415	NA	NA	XLOC_008388	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008388), lincRNA [TCONS_00017701]"	chr10:9406998-9407057	hs|10p14	Agilent_HUMAN_G3V2	DD431415	DD431415	chr10	  9406998	  9407057	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12227_PI429285431	0.90606254	A	1.7158508	A	0.570465577302705	0	lncRNA	13831-1_{1..722}	lnc-ABI3-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ABI3-2:7	chr17	 47335795	 47336516	+	lnc-ABI3-2	lnc-ABI3-2:7	XLOC_012230	linc-NGFR-3	NA	NA	NA	inter
CUST_8099_PI429285431	0.8924724	A	0.89427626	A	0.998750440876839	0	lncRNA	9704-1_{1..2908}	lnc-BLID-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BLID-3:1	chr11	121323384	121326291	-	lnc-BLID-3	lnc-BLID-3:1	ENSG00000246790	RP11-730K11.1	SORL1	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20chr11:121322912-121333722"	NA	inner
CUST_10621_PI429285431	1.6498084	A	0.8979248	A	1.68399003349294	0	lncRNA	12152-1_{1..599}	lnc-CCDC68-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC68-1:1	chr18	 52565157	 52565755	-	lnc-CCDC68-1	lnc-CCDC68-1:1	XLOC_012847	linc-STARD6-2	RAB27B	NA	chr18:52555157-52562747	inter
CUST_50199_PI429285431	1.2322868	A	1.7650763	A	0.691216949631289	0	lncRNA	53924-1_{1..395}	hg19_lincRNAsTranscripts_TCONS_l2_00029281 range=chr9:42493626-42497836 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029281 range=chr9:42493626-42497836 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 42493626	 42494020	-	NA	NA	NA	NA	CBWD7	"hg19_refFlat_GXYLT1:range=chr12:42481588-425384485'pad=0,hg19_refFlat_GXYLT1:range=chr12:42481588-425384485'pad=0 3'pad=0 strand=- repeatMasking=none,-95.20chr9:42483626-42507836"	NA	inter
LNCA_33_P3502311	7.4115753	P	7.797794	P	0.765132388714957	0	lncRNA	XR_133065	XR_133065	XR_133065	100132101	Hs.722631	HERC2P7	hect domain and RLD 2 pseudogene 7	NA	THC2529258	NA	"PREDICTED: Homo sapiens hect domain and RLD 2 pseudogene 7 (HERC2P7), miscRNA [XR_133065]"	chr15:028517921-028517861	hs|15q13.1	Agilent_HUMAN_G3V2	XR_133065	XR_133065	chr15	 28517861	 28517921	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28542_PI429285431	1.4834993	A	1.2852384	A	1.14731448822722	0	lncRNA	30214-1_{1..665}	n325891|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050230|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050230|-1.1484700|-0.3565220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325891|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050230|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050230|-1.1484700|-0.3565220	chr10	107913095	107913759	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002127	0.8846926	A	1.3417481	A	0.728471532351584	0	lncRNA	ENST00000449835	NA	AK097482	NA	Hs.274878	XLOC_002419	NA	ENST00000449835	THC2623548	NA	"BROAD Institute lincRNA (XLOC_002419), lincRNA [TCONS_00003462]"	chr2:182555525-182555466	hs|2q31.3	Agilent_HUMAN_G3V2	ENST00000449835	ENST00000449835	chr2	182555466	182555525	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7271_PI429285431	2.5874348	A	2.8425832	A	0.837900941195596	0	lncRNA	8101-1_{1..286}	"transcript_id ""ENST00000482973.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000482973.2"" | genecode_v17"	chr10	 30654962	 30655247	-	ENSG00000239625.2	ENST00000482973.2	RN7SL241P	RN7SL241P-201	NA	NA	NA	inter
CUST_40467_PI429285431	2.7389603	A	2.8641977	A	0.916853159723875	0	lncRNA	41236-1_{1..2385}	n409393|NR_033789|lncRNA|Homosapiens||RefGeneNoncode|NR_033789||1.5115700|-0.2613647	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409393|NR_033789|lncRNA|Homosapiens||RefGeneNoncode|NR_033789||1.5115700|-0.2613647	chr10	135380222	135382606	-	NA	NA	NA	NA	SYCE1	NA	chr10:135370222-135381795	inter
CUST_39472_PI429285431	7.6253557	P	7.590728	P	1.02429246134765	0	lncRNA	40415-1_{1..2990}	n387041|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wxm.1||0.4450900|-0.2229595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387041|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wxm.1||0.4450900|-0.2229595	chr17	   891434	   894423	-	NA	NA	NA	NA	NXN	"hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-23.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.74;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-55.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70chr17:881434-882998"	NA	inter
CUST_3889_PI429285431	2.8957944	A	3.8245146	P	0.525324144846893	0	lncRNA	3858-1_{1..798}	"transcript_id ""ENST00000534757.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534757.1"" | genecode_v17"	chr11	 27639540	 27640337	-	ENSG00000254934.1	ENST00000534757.1	LINC00678	LINC00678-002	NA	NA	NA	inter
CUST_9846_PI429285431	3.9974525	P	4.3844295	P	0.764730330469669	0	lncRNA	11366-1_{1..436}	lnc-UTP23-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UTP23-1:1	chr8	117619691	117620126	+	lnc-UTP23-1	lnc-UTP23-1:1	XLOC_006905	linc-UTP23-1	NA	NA	NA	inter
LNCA_21_P0006598	0.88695705	A	0.8878359	A	0.9993910131082	0	lncRNA	ENST00000435111	NA	NA	NA	NA	XLOC_008324	NA	ENST00000435111	NA	NA	"BROAD Institute lincRNA (XLOC_008324), lincRNA [TCONS_00017625]"	chrY:16388408-16388349	hs|Yq11.221	Agilent_HUMAN_G3V2	ENST00000435111	ENST00000435111	chrY	 16388349	 16388408	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50770_PI429285431	11.057762	P	10.983965	P	1.0524830505811	0	lncRNA	54430-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00004572 range=chr11:65266529-65274354 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004572 range=chr11:65266529-65274354 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65266529	 65269528	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13705_PI429285431	5.028942	P	5.1430516	P	0.923952378106113	0	lncRNA	15343-1_{1..358}	lnc-PPP1R3D-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP1R3D-2:2	chr20	 58909836	 58910193	-	lnc-PPP1R3D-2	lnc-PPP1R3D-2:2	XLOC_013826	linc-PPP1R3D-2	NA	NA	NA	inter
CUST_12086_PI429285431	0.9182594	A	0.9212005	A	0.997963461391821	0	lncRNA	13680-1_{1..575}	lnc-CXXC11-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CXXC11-3:1	chr2	243002448	243003022	+	lnc-CXXC11-3	lnc-CXXC11-3:1	XLOC_001924	TCONS_00005049	NA	NA	NA	inter
CUST_38757_PI429285431	0.9049927	A	0.91056633	A	0.996144107199782	0	lncRNA	39749-1_{1..1139}	n384332|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003erl.1||0.1331760|-0.4016378	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384332|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003erl.1||0.1331760|-0.4016378	chr3	136734712	136735850	+	NA	NA	NA	NA	IL20RB	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00chr3:136724712-136729927"	NA	inter
CUST_6382_PI429285431	2.6883223	A	1.504248	A	2.27217554549917	0	lncRNA	6308-1_{1..609}	"transcript_id ""ENST00000590274.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590274.1"" | genecode_v17"	chr19	 19871847	 19872455	-	ENSG00000267581.1	ENST00000590274.1	CTC-559E9.4	CTC-559E9.4-001	ZNF506	NA	chr19:19903520-19932560	inner
CUST_30337_PI429285431	0.8882111	A	0.9666204	A	0.94710133496245	0	lncRNA	32113-1_{1..514}	n335259|AY603418|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255712|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255712|3.2754000|-0.2583946	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335259|AY603418|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255712|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255712|3.2754000|-0.2583946	chr21	 35247664	 35248177	+	NA	NA	NA	NA	ITSN1	NA	chr21:35237664-35261609	inner
LNCA_21_P0007701	0.8815949	A	0.8840212	A	0.998319630400386	0	lncRNA	TCONS_00020761	NA	NA	NA	NA	XLOC_010052	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010052), lincRNA [TCONS_00020761]"	chr12:40545893-40545834	hs|12q12	Agilent_HUMAN_G3V2	TCONS_00020761	TCONS_00020761	chr12	 40545834	 40545893	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2220_PI429285431	0.8915934	A	0.9104926	A	0.986985503399678	0	lncRNA	2212-1_{1..657}	"transcript_id ""ENST00000510049.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510049.1"" | genecode_v17"	chr5	 84508776	 84509432	-	ENSG00000249792.1	ENST00000510049.1	RP11-1072N2.3	RP11-1072N2.3-001	NA	NA	NA	inter
CUST_1900_PI429285431	0.8887844	A	0.89591193	A	0.995071756514501	0	lncRNA	1891-1_{1..875}	"transcript_id ""ENST00000513332.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513332.1"" | genecode_v17"	chr4	137039830	137040704	-	ENSG00000251567.1	ENST00000513332.1	RP11-775H9.2	RP11-775H9.2-001	NA	NA	NA	inter
CUST_12097_PI429285431	0.885849	A	0.8996963	A	0.990447698910076	0	lncRNA	13693-1_{1..311}	lnc-PTPN14-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPN14-3:4	chr1	214089278	214089588	-	lnc-PTPN14-3	lnc-PTPN14-3:4	XLOC_001199	linc-ANGEL2-2	NA	NA	NA	inter
CUST_36931_PI429285431	0.91088384	A	2.1609812	A	0.420419834717042	0	lncRNA	38085-2_{3001..3601}	n345399|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_948|NULL|-1.2874800|-0.2744191	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n345399|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_948|NULL|-1.2874800|-0.2744191	chr21	 35556022	 35556622	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30"	NA	inter
CUST_14447_PI429285431	1.8962997	A	1.7542813	A	1.10344781322424	0	lncRNA	16110-1_{1..459}	lnc-PLAGL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLAGL2-1:1	chr20	 30865107	 30865565	-	lnc-PLAGL2-1	lnc-PLAGL2-1:1	XLOC_013721	linc-PLAGL2-2	KIF3B	NA	chr20:30865454-30875358	inter
CUST_375_PI429201921	3.9549851	P	2.9838824	A	1.96033837478676	0	lncRNA	240-3_{...	TC6_apd_hap1000113.hg.1	TCONS_l2_00031069-XLOC_l2_015973 // Broad TUCP // linc-BMS1-11 chr6_apd_hap1:+:4149460-4158503 // chr6_apd_hap1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6_apd_hap1:+:4149460-4158503	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031069-XLOC_l2_015973	linc-BMS1-11	chr6_apd_hap1	  4149460	  4158503	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42196_PI429285431	4.469887	P	5.1476307	P	0.625142200204559	0	lncRNA	44265-1_{1..91}	ENST00000408632 ncrna:miRNA chromosome:GRCh37:6:114026035:114026125:1 gene:ENSG00000221559 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408632 ncrna:miRNA chromosome:GRCh37:6:114026035:114026125:1 gene:ENSG00000221559 gene_biotype:miRNA transcript_biotype:miRNA	chr6	114026035	114026125	+	ENSG00000221559	ENST00000408632	NA	NA	LOC100652953	NA	chr6:114016035-114036125	inter
CUST_43_PI429285431	0.8984018	A	1.3168774	A	0.748214795647879	0	lncRNA	42-1_{1..507}	"transcript_id ""ENST00000527100.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000527100.1"" | genecode_v17"	chr11	122165646	122166152	-	ENSG00000255015.1	ENST00000527100.1	RP11-716H6.1	RP11-716H6.1-001	NA	"hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-22.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10"	NA	inter
CUST_716_PI429285431	0.8904294	A	0.9011372	A	0.992605394248533	0	lncRNA	709-1_{1..734}	"transcript_id ""ENST00000587162.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587162.1"" | genecode_v17"	chr2	  6780395	  6781128	-	ENSG00000236172.2	ENST00000587162.1	AC097517.2	AC097517.2-017	NA	NA	NA	inter
CUST_45880_PI429285431	3.7931728	P	4.586581	P	0.576979433554028	0	lncRNA	50203-1_{1..1348}	"gi|310120766|ref|XR_110904.1| PREDICTED: Homo sapiens uncharacterized LOC100129203 (LOC100129203), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120766|ref|XR_110904.1| PREDICTED: Homo sapiens uncharacterized LOC100129203 (LOC100129203), misc_RNA"	Chr11	 94963350	 94964697	+	100129203	XR_110904.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0002150	6.180568	P	6.0813713	P	1.07117685968518	0	lncRNA	ENST00000446593	NA	NA	NA	NA	XLOC_002560	NA	ENST00000446593	NA	NA	"BROAD Institute lincRNA (XLOC_002560), lincRNA [TCONS_00003524]"	chr2:242989908-242989849	hs|2q37.3	Agilent_HUMAN_G3V2	ENST00000446593	ENST00000446593	chr2	242989849	242989908	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5212_PI429285431	4.508801	P	4.674258	P	0.891646029517879	0	lncRNA	5152-1_{1..416}	"transcript_id ""ENST00000558097.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558097.1"" | genecode_v17"	chr15	 67278703	 67279118	-	ENSG00000259347.1	ENST00000558097.1	RP11-798K3.2	RP11-798K3.2-001	NA	NA	NA	inter
CUST_48278_PI429285431	8.209052	P	8.223764	P	0.989854237719454	0	lncRNA	52139-1_{1..2286}	hg19_lincRNAsTranscripts_TCONS_l2_00001047 range=chr1:16944760-16961756 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001047 range=chr1:16944760-16961756 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 16944760	 16947045	-	NA	NA	NA	NA	NBPF1	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40chr1:16934760-16939982"	NA	inter
CUST_28003_PI429285431	9.245284	P	9.264016	P	0.987099895932072	0	lncRNA	29613-1_{1..1017}	n325258|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327036|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327036|-1.1295700|-0.3285317	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325258|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327036|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327036|-1.1295700|-0.3285317	chr2	 68913451	 68914467	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17206_PI429285431	0.91857404	A	0.91426414	A	1.00299186174487	0	lncRNA	18920-1_{1..1968}	lnc-PDE6B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE6B-1:3	chr4	   611511	   613478	+	lnc-PDE6B-1	lnc-PDE6B-1:3	XLOC_003411	linc-PDE6B	PDE6B	NA	chr4:619363-621965	inter
CUST_8229_PI429285431	3.187986	A	2.7485085	A	1.35611309582976	0	lncRNA	9820-1_{1..547}	lnc-LGALSL-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LGALSL-2:5	chr2	 64475458	 64476004	+	lnc-LGALSL-2	lnc-LGALSL-2:5	ENSG00000225889	AC074289.1	NA	NA	NA	inter
CUST_51036_PI429285431	1.1454322	A	1.0515095	A	1.06726815198467	0	lncRNA	54678-1_{1..520}	hg19_lincRNAsTranscripts_TCONS_l2_00006700 range=chr13:19941252-19955550 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006700 range=chr13:19941252-19955550 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 19941252	 19941771	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48587_PI429285431	5.3438163	P	5.9638314	P	0.650664117494749	0	lncRNA	52434-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00014464 range=chr2:20786003-20793177 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014464 range=chr2:20786003-20793177 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 20786003	 20789002	-	NA	NA	NA	NA	HS1BP3	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80chr2:20776003-20803177"	NA	inter
CUST_47347_PI429285431	0.8988361	A	0.9121423	A	0.990819247817475	0	lncRNA	51398-2_{3001..3438}	"gi|223941873|ref|NR_026916.1| Homo sapiens ankyrin repeat domain 30B pseudogene 2 (ANKRD30BP2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223941873|ref|NR_026916.1| Homo sapiens ankyrin repeat domain 30B pseudogene 2 (ANKRD30BP2), non-coding RNA"	Chr21	 14413487	 14413924	+	149992	NR_026916.1	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90"	NA	inter
CUST_2722_PI429285431	6.7537866	P	5.425842	P	2.5104475786391	0	lncRNA	2707-1_{1..603}	"transcript_id ""ENST00000449466.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449466.1"" | genecode_v17"	chr6	169558356	169558958	-	ENSG00000223485.1	ENST00000449466.1	RP11-417E7.1	RP11-417E7.1-002	NA	NA	NA	inter
CUST_33814_PI429285431	6.219023	P	5.667755	P	1.46537306207664	0	lncRNA	35363-1_{1..3000}	n340600|BC037740|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3062|NULL|-0.9330430|-0.3869879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340600|BC037740|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3062|NULL|-0.9330430|-0.3869879	chr17	 27873904	 27876903	+	NA	NA	NA	NA	TAOK1	NA	chr17:27863904-27878921	inner
LNCA_21_P0004580	1.1403363	A	3.0533915	P	0.265529636807704	0	lncRNA	TCONS_00011084	NA	NA	NA	NA	XLOC_005079	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005079), lincRNA [TCONS_00011084]"	chr5:170173057-170172998	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00011084	TCONS_00011084	chr5	170172998	170173057	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7962_PI429285431	1.3174534	A	0.91414607	A	1.32253630833186	0	lncRNA	9574-1_{1..2936}	lnc-ZNF467-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF467-1:3	chr7	149570313	149573248	-	lnc-ZNF467-1	lnc-ZNF467-1:3	ENSG00000204934	RP4-751H13.6	ZNF862	NA	chr7:149560313-149564568	inter
CUST_8189_PI429285431	1.3568661	A	2.3403409	A	0.505760124287032	0	lncRNA	9788-1_{1..1085}	lnc-PPP1R3G-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP1R3G-2:1	chr6	  5042822	  5043906	+	lnc-PPP1R3G-2	lnc-PPP1R3G-2:1	ENSG00000250255	XLOC_005143	NA	NA	NA	inter
CUST_4958_PI429285431	4.601771	P	5.406434	P	0.572495794317571	0	lncRNA	4902-1_{1..737}	"transcript_id ""ENST00000553435.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553435.1"" | genecode_v17"	chr14	 95426614	 95427350	-	ENSG00000258933.1	ENST00000553435.1	RP11-991C1.1	RP11-991C1.1-001	NA	NA	NA	inter
CUST_47086_PI429285431	0.9049764	A	0.91047955	A	0.996192773029812	0	lncRNA	51168-4_{9001..11734}	"gi|224591393|ref|NR_027130.1| Homo sapiens zinc finger protein 738 (ZNF738), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224591393|ref|NR_027130.1| Homo sapiens zinc finger protein 738 (ZNF738), non-coding RNA"	Chr19	 21550735	 21553468	+	148203	NR_027130.1	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ISCA1:range=chr9:88880958-888973735'pad=0,hg19_refFlat_ISCA1:range=chr9:88880958-888973735'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_2006_PI429285431	1.5495856	A	1.5743287	A	0.982995624511258	0	lncRNA	1997-1_{1..549}	"transcript_id ""ENST00000456728.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456728.1"" | genecode_v17"	chr4	186839294	186839842	+	ENSG00000235149.1	ENST00000456728.1	RP11-45I20.1	RP11-45I20.1-001	SORBS2	NA	chr4:186829294-186850614	inner
CUST_8244_PI429285431	2.4026375	A	2.7254117	A	0.799530957255828	0	lncRNA	9833-2_{3001..3273}	lnc-RPP40-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPP40-1:2	chr6	  5057312	  5057584	-	lnc-RPP40-1	lnc-RPP40-1:2	ENSG00000248284	XLOC_005592	NA	NA	NA	inter
CUST_43768_PI429285431	0.8812982	A	0.88800555	A	0.995361609970122	0	lncRNA	48504-1_{1..645}	"gi|46395480|ref|NR_002141.1| Homo sapiens olfactory receptor, family 2, subfamily M, member 1 pseudogene (OR2M1P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|46395480|ref|NR_002141.1| Homo sapiens olfactory receptor, family 2, subfamily M, member 1 pseudogene (OR2M1P), non-coding RNA"	NA	NA	NA	NA	NA	NR_002141.1	NA	NA	NA	NA	NA	Unknown
CUST_7035_PI429285431	0.88078	A	0.88387114	A	0.997859678785243	0	lncRNA	6980-1_{1..495}	"transcript_id ""ENST00000439992.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439992.1"" | genecode_v17"	chrX	 33744625	 33745119	+	ENSG00000233928.1	ENST00000439992.1	RP11-305F18.1	RP11-305F18.1-001	NA	NA	NA	inter
CUST_25549_PI429285431	5.721839	P	6.0179343	P	0.814453760981165	0	lncRNA	27078-2_{3001..3733}	lnc-IRF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IRF1-1:1	chr5	131811295	131812027	-	lnc-IRF1-1	lnc-IRF1-1:1	ENSG00000234290.1	AC116366.6	C5orf56	NA	chr5:131798295-131818735	inter
LNCA_21_P0002212	3.770039	P	4.261122	P	0.711490796509128	0	lncRNA	XR_109987	XR_109987	XR_109987	NA	NA	LOC100506235	uncharacterized LOC100506235	NA	THC2691321	NA	"PREDICTED: Homo sapiens hypothetical LOC100506235, transcript variant 2 (LOC100506235), miscRNA [XR_109987]"	chr2:48135215-48135274	hs|2p16.3	Agilent_HUMAN_G3V2	XR_109987	XR_109987	chr2	 48135215	 48135274	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13031_PI429285431	0.8958431	A	0.9091115	A	0.990845208576445	0	lncRNA	14656-1_{1..205}	lnc-MAF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAF-1:1	chr16	 79692345	 79692549	-	lnc-MAF-1	lnc-MAF-1:1	XLOC_012016	linc-MAF-3	NA	NA	NA	inter
CUST_42719_PI429285431	6.66912	P	7.003929	P	0.792889101131331	0	lncRNA	45655-1_{1..135}	ENST00000391302 ncrna:snoRNA chromosome:GRCh37:15:26254087:26254221:-1 gene:ENSG00000212604 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391302 ncrna:snoRNA chromosome:GRCh37:15:26254087:26254221:-1 gene:ENSG00000212604 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 26254087	 26254221	-	ENSG00000212604	ENST00000391302	NA	NA	NA	NA	NA	inter
CUST_35622_PI429285431	0.8991226	A	0.9139002	A	0.989809229620113	0	lncRNA	37037-1_{1..343}	n342763|X64974|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5266|NULL|1.7692400|-0.3283416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342763|X64974|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5266|NULL|1.7692400|-0.3283416	chr11	 55944467	 55944809	+	NA	NA	NA	NA	OR5J2	NA	chr11:55934467-55945032	inner
CUST_39804_PI429285431	3.524015	P	3.6257112	P	0.931936654106204	0	lncRNA	40713-1_{1..2005}	n406211|NR_003669|lncRNA|Homosapiens||RefGeneNoncode|NR_003669||0.6351160|-0.1549275	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406211|NR_003669|lncRNA|Homosapiens||RefGeneNoncode|NR_003669||0.6351160|-0.1549275	chr16	 56709648	 56711652	+	NA	NA	NA	NA	NUP93	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30chr16:56720754-56721653"	NA	inter
CUST_51836_PI429285431	3.8822072	P	4.1934977	P	0.805920535594221	0	lncRNA	55391-1_{1..524}	hg19_lincRNAsTranscripts_TCONS_l2_00012517 range=chr19:37742797-37747659 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012517 range=chr19:37742797-37747659 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 37742797	 37743320	+	NA	NA	NA	NA	ZNF383	NA	chr19:37732797-37734574	inter
LNCA_21_P0009228	1.981917	A	0.8842031	A	2.14015294230419	0	lncRNA	ENST00000439136	NA	NA	NA	NA	XLOC_012143	NA	ENST00000439136	NA	NA	"BROAD Institute lincRNA (XLOC_012143), lincRNA [TCONS_00025331]"	chr17:21133169-21133228	hs|17p11.2	Agilent_HUMAN_G3V2	ENST00000439136	ENST00000439136	chr17	 21133169	 21133228	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50551_PI429285431	2.1772738	A	1.1094198	A	2.09631279451672	0	lncRNA	54243-1_{1..492}	hg19_lincRNAsTranscripts_TCONS_l2_00030951 range=chrY:28425289-28475268 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030951 range=chrY:28425289-28475268 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrY	 28425289	 28425780	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8368_PI429285431	6.0788007	P	5.474557	P	1.52018162374543	0	lncRNA	9947-1_{1..3000}	lnc-ARFGEF2-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARFGEF2-2:6	chr20	 47104976	 47107975	+	lnc-ARFGEF2-2	lnc-ARFGEF2-2:6	ENSG00000248368	XLOC_013552	NA	NA	NA	inter
CUST_28447_PI429285431	0.88082623	A	1.294227	A	0.750851353550283	0	lncRNA	30107-1_{1..276}	n325773|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000303977|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000303977|-0.7636720|-0.2730740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325773|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000303977|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000303977|-0.7636720|-0.2730740	chr13	 29842608	 29842883	-	NA	NA	NA	NA	MTUS2	NA	chr13:29832608-29856051	inner
CUST_36674_PI429285431	0.8904752	A	0.9004952	A	0.993078728347197	0	lncRNA	37860-1_{1..889}	n345166|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_715|NULL|-1.3227100|-0.1418287	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345166|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_715|NULL|-1.3227100|-0.1418287	chr12	  5387924	  5388812	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36586_PI429285431	0.88802433	A	0.88131225	A	1.00466329882017	0	lncRNA	37780-1_{1..615}	n345082|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_631|NULL|-1.4075800|-0.2811336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345082|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_631|NULL|-1.4075800|-0.2811336	chrX	 45578523	 45579137	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013166	13.878054	P	13.560154	P	1.24651478945939	0	lncRNA	ENST00000510017	NA	NA	NA	NA	XLOC_l2_013242	NA	ENST00000510017	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013242), lincRNA [TCONS_l2_00025570]"	chr7:334326-334385	hs|7p22.3	Agilent_HUMAN_G3V2	ENST00000510017	ENST00000510017	chr7	   334326	   334385	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43375_PI429285431	3.7985907	P	4.0556717	P	0.836779260458501	0	lncRNA	48189-3_{6001..6409}	"gi|297747267|ref|NR_033711.1| Homo sapiens TP73 antisense RNA 1 (TP73-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|297747267|ref|NR_033711.1| Homo sapiens TP73 antisense RNA 1 (TP73-AS1), transcript variant 1, non-coding RNA"	Chr1	  3658548	  3658956	-	57212	NR_033711.1	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50"	NA	inter
CUST_17630_PI429285431	2.9914863	P	2.9203033	P	1.05057779708122	0	lncRNA	19356-1_{1..1088}	lnc-STAT6-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STAT6-1:5	chr12	 57480332	 57481419	-	lnc-STAT6-1	lnc-STAT6-1:5	XLOC_010097	linc-TMEM194A	STAT6	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.91;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30chr12:57489187-57490563"	NA	inter
CUST_33088_PI429285431	0.87698317	A	0.87790596	A	0.999360575232456	0	lncRNA	34692-1_{1..1285}	n339776|BC039546|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2223|NULL|-0.8748070|-0.2702465	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339776|BC039546|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2223|NULL|-0.8748070|-0.2702465	chr18	  3878179	  3879463	+	NA	NA	NA	NA	DLGAP1	NA	chr18:3868179-3907069	inner
CUST_29721_PI429285431	9.11144	P	8.246342	P	1.82146339211873	0	lncRNA	31483-1_{1..525}	n333392|BC007040|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086729|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086729|2.1598500|-0.2035486	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333392|BC007040|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086729|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086729|2.1598500|-0.2035486	chr3	169684588	169685112	+	NA	NA	NA	NA	SEC62	NA	chr3:169684580-169710999	inner
LNCA_21_P0002481	6.919434	P	6.781915	P	1.1000118001143	0	lncRNA	TCONS_00004363	NA	NA	NA	NA	XLOC_002243	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002243), lincRNA [TCONS_00004363]"	chr2:105719491-105719432	hs|2q12.1	Agilent_HUMAN_G3V2	TCONS_00004363	TCONS_00004363	chr2	105719432	105719491	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_274_PI429285431	0.902602	A	1.4460332	A	0.686137108843439	0	lncRNA	266-1_{1..434}	"transcript_id ""ENST00000439878.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439878.1"" | genecode_v17"	chr1	 69709055	 69709488	-	ENSG00000235446.1	ENST00000439878.1	RP11-74K19.1	RP11-74K19.1-001	NA	NA	NA	inter
CUST_26190_PI429285431	0.89602894	A	0.907858	A	0.991834242822765	0	lncRNA	27701-1_{1..779}	lnc-TIMM21-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMM21-4:3	chr18	 71000609	 71001387	+	lnc-TIMM21-4	lnc-TIMM21-4:3	ENSG00000261780.2	CTD-2354A18.1	NA	NA	NA	inter
CUST_46147_PI429285431	10.252073	P	9.807527	P	1.36088579356429	0	lncRNA	50396-1_{1..1895}	"gi|378404899|ref|NR_046373.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 4 (P2RX4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378404899|ref|NR_046373.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 4 (P2RX4), transcript variant 4, non-coding RNA"	Chr12	121647664	121649558	+	5025	NR_046373.1	NA	NA	NA	NA	NA	inter
CUST_34494_PI429285431	2.513957	A	2.8724463	A	0.779980899393092	0	lncRNA	35961-1_{1..1863}	n341371|AK123150|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3840|NULL|-0.6908490|-0.1912977	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341371|AK123150|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3840|NULL|-0.6908490|-0.1912977	chr7	155192616	155194478	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5332_PI429285431	0.8919965	A	0.892985	A	0.999315058691482	0	lncRNA	5271-1_{1..3000}	"transcript_id ""ENST00000565106.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565106.1"" | genecode_v17"	chr15	 95024040	 95027039	+	ENSG00000260359.1	ENST00000565106.1	RP11-4F5.2	RP11-4F5.2-001	MCTP2	NA	chr15:95014040-95027181	inner
CUST_36492_PI429285431	6.6524305	P	6.8930655	P	0.846372700725805	0	lncRNA	37694-1_{1..3000}	n344994|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_543|NULL|-1.3531100|-0.4263074	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344994|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_543|NULL|-1.3531100|-0.4263074	chr8	 28428148	 28431147	+	NA	NA	NA	NA	FZD3	NA	chr8:28418148-28431785	inner
LNCA_21_P0005855	0.88619643	A	0.8868594	A	0.999540569784102	0	lncRNA	TCONS_00015035	NA	NA	NA	NA	XLOC_007116	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007116), lincRNA [TCONS_00015035]"	chr8:69972956-69972897	hs|8q13.2	Agilent_HUMAN_G3V2	TCONS_00015035	TCONS_00015035	chr8	 69972897	 69972956	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5594_PI429285431	2.9138377	P	1.8369019	A	2.10955075693533	0	lncRNA	5523-1_{1..762}	"transcript_id ""ENST00000561475.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561475.1"" | genecode_v17"	chr16	 66921918	 66922679	+	ENSG00000261705.1	ENST00000561475.1	RP11-61A14.2	RP11-61A14.2-001	PDP2	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80chr16:66914383-66925004"	NA	inner
CUST_1739_PI429285431	0.92086613	A	0.92645985	A	0.996130235664075	0	lncRNA	1725-1_{1..756}	"transcript_id ""ENST00000515128.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515128.1"" | genecode_v17"	chr4	 36550506	 36551261	-	ENSG00000248215.1	ENST00000515128.1	RP11-722M1.1	RP11-722M1.1-003	NA	NA	NA	inter
CUST_26673_PI429285431	5.474081	P	5.8220263	P	0.785702306124243	0	lncRNA	28170-1_{1..167}	lncrnadb|EBER1_and_EBER2_RNAs_EBER1_(Human_herpesvirus_4)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncrnadb20130808	"lncrnadb20130808,"	>lncrnadb|EBER1_and_EBER2_RNAs_EBER1_(Human_herpesvirus_4)	NA	NA	      166	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008677	0.88611925	A	0.8880893	A	0.998635397315077	0	lncRNA	TCONS_00023517	NA	NA	NA	NA	XLOC_011359	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011359), lincRNA [TCONS_00023517]"	chr15:93762952-93763011	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00023517	TCONS_00023517	chr15	 93762952	 93763011	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8559_PI429285431	1.3042228	A	1.9570723	A	0.636022848956587	0	lncRNA	10118-1_{1..1578}	lnc-DCAF8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DCAF8-1:1	chr1	160178634	160180211	-	lnc-DCAF8-1	lnc-DCAF8-1:1	ENSG00000227741	RP11-536C5.7	CASQ1	NA	chr1:160168634-160171676	inner
CUST_35737_PI429285431	2.768322	A	2.3109503	A	1.37303813908811	0	lncRNA	37154-1_{1..1104}	n342905|D83699|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5413|NULL|-0.6584750|-0.1601106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342905|D83699|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5413|NULL|-0.6584750|-0.1601106	chr12	117298224	117299327	-	NA	NA	NA	NA	RNFT2	NA	chr12:117288224-117291436	inter
CUST_15236_PI429285431	9.037132	P	8.869069	P	1.12354896540265	0	lncRNA	16907-1_{1..1418}	lnc-TCF7L2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF7L2-1:2	chr10	114704018	114705435	+	lnc-TCF7L2-1	lnc-TCF7L2-1:2	XLOC_008619	linc-TCF7L2-1	TCF7L2	NA	chr10:114710009-114714954	inter
CUST_40873_PI429285431	6.202819	P	3.2892423	P	7.53483907575664	0	lncRNA	41568-2_{3001..4838}	n410673|NR_037923|lncRNA|Homosapiens||RefGeneNoncode|NR_037923||15.5309000|-0.3806068	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410673|NR_037923|lncRNA|Homosapiens||RefGeneNoncode|NR_037923||15.5309000|-0.3806068	chr15	 55650420	 55652257	-	NA	NA	NA	NA	FLJ27352	"hg19_refFlat_PIGB:range=chr15:55611449-556476305'pad=0,hg19_refFlat_PIGB:range=chr15:55611449-556476305'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10chr15:55700723-55710910"	NA	inner
LNCA_21_P0010254	3.307843	P	5.524179	P	0.21518717470343	0	lncRNA	THC2660769	NA	NA	NA	NA	XLOC_013952	NA	NA	THC2660769	NA	"BROAD Institute lincRNA (XLOC_013952), lincRNA [TCONS_00029032]"	chr21:043475157-043475216	hs|21q22.3	Agilent_HUMAN_G3V2	THC2660769	THC2660769	chr21	 43475157	 43475216	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35819_PI429285431	0.8945678	A	0.9075195	A	0.991062742506971	0	lncRNA	37224-2_{3001..4299}	n344494|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_42|NULL|-1.4125300|-0.3231756	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344494|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_42|NULL|-1.4125300|-0.3231756	chr6	132458117	132459415	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20"	NA	inter
CUST_37899_PI429285431	1.4803841	A	2.264944	A	0.58052902292679	0	lncRNA	38988-1_{1..217}	n346437|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1987|NULL|-1.4132100|-0.2867260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346437|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1987|NULL|-1.4132100|-0.2867260	chr11	  3402158	  3402374	-	NA	NA	NA	NA	ZNF195	NA	chr11:3392158-3400452	inter
CUST_49876_PI429285431	5.4219103	P	5.500509	P	0.946977005694296	0	lncRNA	53627-1_{1..329}	hg19_lincRNAsTranscripts_TCONS_l2_00026046 range=chr7:76629517-76631614 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026046 range=chr7:76629517-76631614 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 76629517	 76629845	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34474_PI429285431	5.275673	P	5.1425114	P	1.09669442528499	0	lncRNA	35942-1_{1..1824}	n341349|BC020909|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3818|NULL|-0.1077610|-0.3108191	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341349|BC020909|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3818|NULL|-0.1077610|-0.3108191	chr7	142917560	142919383	-	NA	NA	NA	NA	TAS2R40	"hg19_refFlat_TAS2R40:range=chr7:142919172-1429201435'pad=0,hg19_refFlat_TAS2R40:range=chr7:142919172-1429201435'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.90chr7:142919172-142920143"	NA	inner
CUST_47735_PI429285431	1.5492325	A	1.1730719	A	1.29788323852945	0	lncRNA	51687-1_{1..3000}	"gi|385137098|ref|NR_047636.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 66, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137098|ref|NR_047636.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 66, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047636.1	NA	NA	NA	NA	NA	inter
CUST_20983_PI429285431	1.7459244	A	1.8560222	A	0.926525250805292	0	lncRNA	22612-1_{1..623}	lnc-GLS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLS-1:1	chr2	191883396	191884018	+	lnc-GLS-1	lnc-GLS-1:1	ENSG00000230686.1	AC067945.2	STAT1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr2:191873396-191878976"	NA	inter
CUST_51666_PI429285431	5.339324	P	5.450695	P	0.925707939080546	0	lncRNA	55233-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00010936 range=chr17:66098133-66132705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010936 range=chr17:66098133-66132705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 66104133	 66107132	+	NA	NA	NA	NA	NA	"hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0,hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0,hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0,hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0,hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0,hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SH3GL1:range=chr19:4361597-44003655'pad=0,hg19_refFlat_SH3GL1:range=chr19:4361597-44003655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0,hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50"	NA	inter
CUST_16905_PI429285431	0.9029383	A	0.9194069	A	0.988649742118125	0	lncRNA	18615-1_{1..582}	lnc-PELI2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PELI2-4:1	chr14	 56963039	 56963620	+	lnc-PELI2-4	lnc-PELI2-4:1	XLOC_010841	linc-C14orf101-3	NA	NA	NA	inter
CUST_9482_PI429285431	1.3735824	A	2.3456702	A	0.509767816940874	0	lncRNA	10990-1_{1..1704}	lnc-C5orf27-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf27-1:2	chr5	 95184545	 95186248	+	lnc-C5orf27-1	lnc-C5orf27-1:2	XLOC_004478	linc-CAST-3	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.91;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30"	NA	inter
CUST_30410_PI429285431	3.6275203	P	4.034684	P	0.754104466617041	0	lncRNA	32190-1_{1..289}	n335543|BC070301|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264259|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264259|0.6499310|-0.3086635	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335543|BC070301|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264259|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264259|0.6499310|-0.3086635	chr11	 68514586	 68514874	-	NA	NA	NA	NA	CPT1A	NA	chr11:68522088-68527699	inner
CUST_47843_PI429285431	4.6477427	P	5.205926	P	0.679156847281181	0	lncRNA	51749-2_{3001..3614}	"gi|341916270|ref|XR_132463.1| PREDICTED: Homo sapiens putative POM121-like protein 1-like (LOC100653056), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|341916270|ref|XR_132463.1| PREDICTED: Homo sapiens putative POM121-like protein 1-like (LOC100653056), misc_RNA"	NA	NA	NA	NA	NA	XR_132463.1	NA	NA	NA	NA	NA	Unknown
CUST_31446_PI429285431	2.7177536	A	3.6411903	P	0.527251536721226	0	lncRNA	33213-2_{3001..4047}	n337913|BC040537|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|296|NULL|-0.8694670|-0.1808700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337913|BC040537|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|296|NULL|-0.8694670|-0.1808700	chr1	 47694468	 47695514	+	NA	NA	NA	NA	TAL1	"hg19_refFlat_TAL1:range=chr1:47685392-476915605'pad=0,hg19_refFlat_TAL1:range=chr1:47685392-476915605'pad=0 3'pad=0 strand=- repeatMasking=none,-105.50chr1:47681963-47695443"	NA	inner
CUST_2718_PI429285431	0.91812783	A	2.0594792	A	0.453334740834161	0	lncRNA	2703-1_{1..914}	"transcript_id ""ENST00000444586.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444586.1"" | genecode_v17"	chr6	169362705	169363618	-	ENSG00000225879.1	ENST00000444586.1	RP3-495K2.3	RP3-495K2.3-001	NA	NA	NA	inter
CUST_35848_PI429285431	0.88718694	A	1.2551638	A	0.774868359303021	0	lncRNA	37246-3_{6001..7251}	n344517|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_65|NULL|-1.3509700|-0.3193190	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344517|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_65|NULL|-1.3509700|-0.3193190	chr1	246940562	246941812	+	NA	NA	NA	NA	LOC100130097	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50chr1:246935180-246948062"	NA	inter
CUST_34444_PI429285431	0.8941029	A	0.90327185	A	0.993664721199389	0	lncRNA	35922-1_{1..3000}	n341320|AK126477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3789|NULL|0.5460210|-0.3756463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341320|AK126477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3789|NULL|0.5460210|-0.3756463	chr7	131024723	131027722	+	NA	NA	NA	NA	MKLN1	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60chr7:131014723-131039036"	NA	inner
CUST_30567_PI429285431	14.899487	P	13.945259	P	1.93754255875152	0	lncRNA	32349-1_{1..305}	n335773|X07621|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321269|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321269|1.6372200|-0.2410441	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335773|X07621|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321269|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321269|1.6372200|-0.2410441	chr15	 45003730	 45004034	+	NA	NA	NA	NA	B2M	NA	chr15:45003685-45010357	inner
CUST_40541_PI429285431	1.0342053	A	0.9520884	A	1.05857016618197	0	lncRNA	41299-1_{1..1070}	n409665|NR_034065|lncRNA|Homosapiens||RefGeneNoncode|NR_034065||3.9223600|-0.2313989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409665|NR_034065|lncRNA|Homosapiens||RefGeneNoncode|NR_034065||3.9223600|-0.2313989	chr11	104757417	104758486	-	NA	NA	NA	NA	CASP12	NA	chr11:104756445-104769397	inter
CUST_33857_PI429285431	0.8816417	A	0.8922246	A	0.992691331870106	0	lncRNA	35401-1_{1..1957}	n340643|D86519|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3105|NULL|4.5734200|-0.2324759	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340643|D86519|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3105|NULL|4.5734200|-0.2324759	chr5	137143461	137145417	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45511_PI429285431	0.9132011	A	1.3072233	A	0.76100498008585	0	lncRNA	49921-1_{1..2277}	"gi|373938436|ref|NR_046108.1| Homo sapiens uncharacterized LOC439950 (LOC439950), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|373938436|ref|NR_046108.1| Homo sapiens uncharacterized LOC439950 (LOC439950), non-coding RNA"	Chr10	 11113504	 11115780	-	439950	NR_046108.1	NA	NA	NA	NA	NA	inter
CUST_18959_PI429285431	1.4781021	A	1.8652875	A	0.764619871719708	0	lncRNA	20651-1_{1..586}	lnc-RP11-687M24.4.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-687M24.4.1-2:1	chr11	125034237	125034822	-	lnc-RP11-687M24.4.1-2	lnc-RP11-687M24.4.1-2:1	ENSG00000254880	RP11-687M24.5	PKNOX2	NA	chr11:125034559-125044505	inter
CUST_50472_PI429285431	8.599485	P	7.2236185	P	2.59523737209094	0	lncRNA	54171-3_{6001..6852}	hg19_lincRNAsTranscripts_TCONS_l2_00030539 range=chrX:74959074-74966889 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030539 range=chrX:74959074-74966889 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 74965074	 74965925	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10"	NA	inter
CUST_31499_PI429285431	5.140512	P	5.9272847	P	0.57963929229354	0	lncRNA	33262-1_{1..438}	n337981|AF086235|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|367|NULL|-1.0426600|-0.3317993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337981|AF086235|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|367|NULL|-1.0426600|-0.3317993	chr1	 63790369	 63790806	+	NA	NA	NA	NA	FOXD3	NA	chr1:63788730-63790797	inner
CUST_379_PI429285431	1.0909722	A	0.88686466	A	1.1519735084614	0	lncRNA	371-1_{1..410}	"transcript_id ""ENST00000449439.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449439.1"" | genecode_v17"	chr1	119543241	119543650	-	ENSG00000239216.1	ENST00000449439.1	RP4-712E4.2	RP4-712E4.2-001	NA	NA	NA	inter
CUST_18210_PI429285431	0.8880381	A	0.8938511	A	0.995978842034328	0	lncRNA	19945-1_{1..597}	lnc-TMEM75-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM75-2:5	chr8	129573316	129573912	-	lnc-TMEM75-2	lnc-TMEM75-2:5	ENSG00000253984	CTD-3056O22.1	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30"	NA	inter
CUST_32477_PI429285431	2.0589268	A	2.3547325	A	0.814617267111976	0	lncRNA	34146-1_{1..887}	n339079|CR619533|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1509|NULL|-1.1126700|-0.4731234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339079|CR619533|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1509|NULL|-1.1126700|-0.4731234	chr2	198748706	198749592	-	NA	NA	NA	NA	PLCL1	NA	chr2:198738706-198759593	inner
LNCA_21_P0005463	8.80676	P	9.060264	P	0.838856534587311	0	lncRNA	TCONS_00013672	NA	NA	NA	NA	XLOC_006331	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006331), lincRNA [TCONS_00013672]"	chr7:1019919-1019650	hs|7p22.3	Agilent_HUMAN_G3V2	TCONS_00013672	TCONS_00013672	chr7	  1019650	  1019919	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22332_PI429285431	0.8951998	A	0.9058027	A	0.992677570341537	0	lncRNA	23928-4_{9001..12000}	lnc-RP11-324D17.2.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-324D17.2.1-3:1	chr16	 54042349	 54045348	+	lnc-RP11-324D17.2.1-3	lnc-RP11-324D17.2.1-3:1	ENSG00000261389.1	RP11-357N13.7	FTO	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-23.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10chr16:54023349-54058240"	NA	inner
CUST_47438_PI429285431	1.1644623	A	1.0086131	A	1.11407719403755	0	lncRNA	51472-1_{1..944}	"gi|221139719|ref|NR_026651.1| Homo sapiens DiGeorge syndrome critical region gene 10 (non-protein coding) (DGCR10), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|221139719|ref|NR_026651.1| Homo sapiens DiGeorge syndrome critical region gene 10 (non-protein coding) (DGCR10), non-coding RNA"	Chr22	 19010137	 19011080	+	26222	NR_026651.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0006992	0.8825765	A	2.199437	A	0.401407506191634	0	lncRNA	TCONS_00018503	NA	NA	NA	NA	XLOC_008811	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008811), lincRNA [TCONS_00018503]"	chr10:48513724-48513665	hs|10q11.22	Agilent_HUMAN_G3V2	TCONS_00018503	TCONS_00018503	chr10	 48513665	 48513724	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36982_PI429285431	8.317587	P	7.677397	P	1.5585344016137	0	lncRNA	38128-1_{1..781}	n345444|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_993|NULL|-1.2941500|-0.3189713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345444|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_993|NULL|-1.2941500|-0.3189713	chr1	 61425137	 61425917	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33762_PI429285431	0.88514084	A	1.8562214	A	0.510123843545689	0	lncRNA	35316-1_{1..1643}	n340542|BC043237|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3004|NULL|-1.1157300|-0.4176976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340542|BC043237|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3004|NULL|-1.1157300|-0.4176976	chr5	 87704802	 87706444	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009447	0.9280391	A	0.88401157	A	1.03098799227242	0	lncRNA	TCONS_00026269	NA	NA	NA	NA	XLOC_012617	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012617), lincRNA [TCONS_00026269]"	chr18:5851684-5851743	hs|18p11.31	Agilent_HUMAN_G3V2	TCONS_00026269	TCONS_00026269	chr18	  5851684	  5851743	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25637_PI429285431	7.048038	P	7.1132126	P	0.955829632748206	0	lncRNA	27167-1_{1..1636}	lnc-ASH1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASH1L-1:1	chr1	155293869	155295504	-	lnc-ASH1L-1	lnc-ASH1L-1:1	ENSG00000225855.2	RUSC1-AS1	FDPS	"hg19_refFlat_FDPS:range=chr1:155279856-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155279856-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20;hg19_refFlat_FDPS:range=chr1:155279581-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155279581-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20;hg19_refFlat_FDPS:range=chr1:155287765-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155287765-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20chr1:155283869-155290457"	NA	inner
CUST_42602_PI429285431	7.086423	P	7.0602946	P	1.01827582237982	0	lncRNA	45460-1_{1..70}	ENST00000365530 ncrna:snoRNA chromosome:GRCh37:2:232325082:232325151:-1 gene:ENSG00000202400 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365530 ncrna:snoRNA chromosome:GRCh37:2:232325082:232325151:-1 gene:ENSG00000202400 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	232325082	232325151	-	ENSG00000202400	ENST00000365530	NA	NA	NCL	NA	chr2:232319459-232329205	inter
CUST_20987_PI429285431	0.8800791	A	0.8813194	A	0.999140658997099	0	lncRNA	22616-1_{1..862}	lnc-KIAA0528-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0528-3:1	chr12	 22777615	 22778476	-	lnc-KIAA0528-3	lnc-KIAA0528-3:1	ENSG00000257023.1	RP11-268P4.4	ETNK1	NA	chr12:22778076-22787949	inter
CUST_51430_PI429285431	0.8854912	A	0.8955039	A	0.993083753312871	0	lncRNA	55008-1_{1..1054}	hg19_lincRNAsTranscripts_TCONS_l2_00010036 range=chr16:20598010-20599487 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010036 range=chr16:20598010-20599487 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 20598010	 20599063	-	NA	NA	NA	NA	ACSM1	NA	chr16:20599286-20609487	inter
CUST_328_PI429201921	1.6752546	A	1.3398725	A	1.261711530822	0	lncRNA	218-3_{6001..7821}	TC02004166.hg.1	 TCONS_l2_00014514-XLOC_l2_007967 // Broad TUCP // linc-CYP1B1-1 chr2:-:38365600-38367600 // chr2 // 100 // 100 // 0 // --- // 0///TCONS_l2_00015764-XLOC_l2_007967 // Broad TUCP // linc-CYP1B1-1 chr2:-:38359778-38366088 // chr2 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr2:-:38359778-38366088	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00015764-XLOC_l2_007967	linc-CYP1B1-1	chr2	 38359778	 38366088	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010722	0.8810959	A	1.1309503	A	0.840981284677245	0	lncRNA	ENST00000455004	NA	NA	NA	NA	XLOC_l2_000401	NA	ENST00000455004	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000401), lincRNA [TCONS_l2_00002174]"	chr1:143712552-143713396	hs|1q21.1	Agilent_HUMAN_G3V2	ENST00000455004	ENST00000455004	chr1	143712552	143713396	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003064	2.2157788	A	3.0470388	P	0.562038163217915	0	lncRNA	TCONS_00006316	NA	NA	NA	NA	XLOC_002926	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002926), lincRNA [TCONS_00006316]"	chr3:176283103-176283162	hs|3q26.32	Agilent_HUMAN_G3V2	TCONS_00006316	TCONS_00006316	chr3	176283103	176283162	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36589_PI429285431	13.312039	P	13.462462	P	0.900986253577085	0	lncRNA	37783-1_{1..389}	n345085|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_634|NULL|-1.3179500|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345085|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_634|NULL|-1.3179500|-1.0000000	chrX	 48911018	 48911406	+	NA	NA	NA	NA	CCDC120	NA	chrX:48916516-48921407	inner
CUST_55_PI429285431	4.0962024	P	4.230039	P	0.911404500692632	0	lncRNA	54-1_{1..486}	"transcript_id ""ENST00000558224.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000558224.1"" | genecode_v17"	chr14	103587184	103587669	-	ENSG00000259717.1	ENST00000558224.1	LINC00677	LINC00677-002	TNFAIP2	NA	chr14:103592664-103599246	inter
CUST_3281_PI429285431	1.6143506	A	0.8971259	A	1.6440164104882	0	lncRNA	3259-1_{1..490}	"transcript_id ""ENST00000520544.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520544.1"" | genecode_v17"	chr8	121064419	121064908	+	ENSG00000254343.2	ENST00000520544.1	RP11-760H22.2	RP11-760H22.2-001	DEPTOR	NA	chr8:121054419-121063157	inter
CUST_10756_PI429285431	1.0741155	A	0.8861554	A	1.13915187175012	0	lncRNA	12292-1_{1..2201}	lnc-AC016251.1-8:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC016251.1-8:8	chr15	 95870059	 95872259	-	lnc-AC016251.1-8	lnc-AC016251.1-8:8	XLOC_011592	linc-RGMA-7	NA	NA	NA	inter
CUST_27436_PI429285431	1.1814898	A	1.607777	A	0.744174468633351	0	lncRNA	29002-1_{1..236}	n324607|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039729|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039729|-1.2225700|-0.3867395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324607|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039729|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039729|-1.2225700|-0.3867395	chr6	  4171933	  4172168	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7256_PI429285431	1.7388344	A	1.0172812	A	1.64895633938918	0	lncRNA	8017-1_{1..304}	"transcript_id ""ENST00000517151.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517151.1"" | genecode_v17"	chr9	 18651145	 18651448	+	ENSG00000252960.1	ENST00000517151.1	RN7SKP258	RN7SKP258-201	ADAMTSL1	NA	chr9:18641145-18661448	inner
CUST_36812_PI429285431	0.8842947	A	0.89118695	A	0.99523404970044	0	lncRNA	37984-1_{1..3000}	n345292|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_841|NULL|-1.2907700|-0.3125293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345292|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_841|NULL|-1.2907700|-0.3125293	chr15	 39692629	 39695628	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15012_PI429285431	0.88602555	A	2.3691444	A	0.357714660064146	0	lncRNA	16674-1_{1..417}	lnc-PRKAA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRKAA2-2:1	chr1	 56703332	 56703748	+	lnc-PRKAA2-2	lnc-PRKAA2-2:1	XLOC_000213	linc-PRKAA2-2	NA	NA	NA	inter
CUST_44110_PI429285431	3.5509262	P	3.3598619	P	1.14160558662754	0	lncRNA	48776-1_{1..1345}	"gi|223555977|ref|NR_026829.1| Homo sapiens ghrelin opposite strand/antisense RNA 2 (tail to tail) (GHRLOS2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223555977|ref|NR_026829.1| Homo sapiens ghrelin opposite strand/antisense RNA 2 (tail to tail) (GHRLOS2), non-coding RNA"	Chr3	 10326103	 10327447	+	84657	NR_026829.1	NA	NA	NA	NA	NA	inter
CUST_4562_PI429285431	1.4839996	A	1.1258676	A	1.28176519445011	0	lncRNA	4511-1_{1..1308}	"transcript_id ""ENST00000576696.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000576696.1"" | genecode_v17"	chr13	 24040710	 24042017	+	ENSG00000232977.2	ENST00000576696.1	LINC00327	LINC00327-002	NA	NA	NA	inter
CUST_5077_PI429285431	2.1137927	A	2.2430499	A	0.914302075522496	0	lncRNA	5017-1_{1..524}	"transcript_id ""ENST00000460164.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000460164.1"" | genecode_v17"	chr14	106110833	106111356	-	ENSG00000253364.1	ENST00000460164.1	RP11-731F5.2	RP11-731F5.2-002	NA	NA	NA	inter
CUST_26300_PI429285431	2.271123	A	2.2445066	A	1.01862031836789	0	lncRNA	27806-2_{3001..4076}	lnc-RP11-582J16.5.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-582J16.5.1-4:1	chr8	 22405699	 22406774	-	lnc-RP11-582J16.5.1-4	lnc-RP11-582J16.5.1-4:1	ENSG00000251034.1	RP11-582J16.4	SORBS3	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60chr8:22409251-22412918"	NA	inter
LNCA_21_P0007199	1.0735822	A	0.88852215	A	1.13686429250867	0	lncRNA	ENST00000532199	NA	NA	NA	NA	XLOC_009113	NA	ENST00000532199	THC2697043	NA	"BROAD Institute lincRNA (XLOC_009113), lincRNA [TCONS_00019281]"	chr11:41883290-41883349	hs|11p12	Agilent_HUMAN_G3V2	ENST00000532199	ENST00000532199	chr11	 41883290	 41883349	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51006_PI429285431	0.891962	A	0.8957645	A	0.99736777823286	0	lncRNA	54650-1_{1..2115}	hg19_lincRNAsTranscripts_TCONS_l2_00007052 range=chr13:19774845-19814314 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007052 range=chr13:19774845-19814314 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 19774845	 19776959	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6095_PI429285431	3.797063	P	3.8782952	P	0.945249967682294	0	lncRNA	6021-1_{1..2876}	"transcript_id ""ENST00000582957.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000582957.1"" | genecode_v17"	chr18	 14337422	 14340297	+	ENSG00000265787.1	ENST00000582957.1	CYP4F35P	CYP4F35P-001	NA	NA	NA	inter
CUST_23363_PI429285431	1.3241851	A	1.1034628	A	1.16531686822953	0	lncRNA	24932-1_{1..374}	lnc-TPX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TPX2-1:1	chr20	 30304424	 30304797	+	lnc-TPX2-1	lnc-TPX2-1:1	ENSG00000236559.1	RP11-243J16.7	BCL2L1	NA	chr20:30294424-30310656	inner
LNCA_19_P00318097	4.6138563	P	5.048658	P	0.739795433321993	0	lncRNA	ENST00000485404	NA	NA	NA	NA	XLOC_l2_009762	NA	ENST00000485404	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009762), lincRNA [TCONS_l2_00019819]"	chr3:72202064-72202123	hs|3p13	Agilent_HUMAN_G3V2	ENST00000485404	ENST00000485404	chr3	 72202064	 72202123	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40107_PI429285431	4.0809813	P	4.5949583	P	0.700289324636742	0	lncRNA	40952-1_{1..2533}	n407540|NR_026997|lncRNA|Homosapiens||RefGeneNoncode|NR_026997||3.4288000|-0.1746026	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407540|NR_026997|lncRNA|Homosapiens||RefGeneNoncode|NR_026997||3.4288000|-0.1746026	chr22	 50013289	 50015821	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40625_PI429285431	0.88556963	A	1.0654365	A	0.882784454720027	0	lncRNA	41366-1_{1..1066}	n410114|NR_036545|lncRNA|Homosapiens||RefGeneNoncode|NR_036545||2.2667800|-0.1287190	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410114|NR_036545|lncRNA|Homosapiens||RefGeneNoncode|NR_036545||2.2667800|-0.1287190	chr12	  6898691	  6899756	+	NA	NA	NA	NA	CD4	NA	chr12:6898638-6929976	inner
CUST_48216_PI429285431	4.1567593	P	4.1855907	P	0.980213960975391	0	lncRNA	52079-1_{1..858}	hg19_lincRNAsTranscripts_TCONS_l2_00001390 range=chr1:95138469-95285827 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001390 range=chr1:95138469-95285827 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 95138469	 95139326	-	NA	NA	NA	NA	SLC44A3	NA	chr1:95285901-95295827	inter
LNCA_21_P0002639	6.7140636	P	6.8966746	P	0.881106918706511	0	lncRNA	TCONS_00005057	NA	NA	NA	NA	XLOC_001935	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001935), lincRNA [TCONS_00005057]"	chr2:747717-747658	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00005057	TCONS_00005057	chr2	   747658	   747717	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16586_PI429285431	1.3054432	A	1.5214907	A	0.860920842491674	0	lncRNA	18287-1_{1..583}	lnc-LEF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LEF1-1:1	chr4	108910268	108910850	-	lnc-LEF1-1	lnc-LEF1-1:1	XLOC_004041	linc-PAPSS1	HADH	NA	chr4:108910870-108920629	inter
CUST_31655_PI429285431	0.8880656	A	0.8996864	A	0.99197742922266	0	lncRNA	33406-1_{1..2469}	n338177|AK172821|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|567|NULL|-0.9651350|-0.1973398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338177|AK172821|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|567|NULL|-0.9651350|-0.1973398	chr15	102062799	102065267	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12163_PI429285431	8.577716	P	8.687252	P	0.926886119341289	0	lncRNA	13761-1_{1..686}	lnc-C14orf166B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf166B-3:2	chr14	 77431958	 77432643	+	lnc-C14orf166B-3	lnc-C14orf166B-3:2	XLOC_010881	linc-KIAA1737-2	NA	NA	NA	inter
CUST_40915_PI429285431	2.5247903	A	1.955428	A	1.48386752658709	0	lncRNA	41601-1_{1..701}	n410758|NR_038210|lncRNA|Homosapiens||RefGeneNoncode|NR_038210||-0.9963670|-0.2873166	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410758|NR_038210|lncRNA|Homosapiens||RefGeneNoncode|NR_038210||-0.9963670|-0.2873166	chr8	119633239	119633939	+	NA	NA	NA	NA	SAMD12	NA	chr8:119623239-119634184	inner
CUST_42455_PI429285431	6.5431056	P	7.1548247	P	0.654416441505224	0	lncRNA	45186-1_{1..138}	ENST00000584302 ncrna:snoRNA chromosome:GRCh37:3:186505401:186505538:1 gene:ENSG00000263776 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584302 ncrna:snoRNA chromosome:GRCh37:3:186505401:186505538:1 gene:ENSG00000263776 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	186505401	186505538	+	ENSG00000263776	ENST00000584302	NA	NA	RFC4	NA	chr3:186507681-186515538	inter
CUST_49948_PI429285431	4.9337153	P	4.5158215	P	1.33597573061682	0	lncRNA	53698-1_{1..723}	hg19_lincRNAsTranscripts_TCONS_l2_00026200 range=chr7:128218983-128259236 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026200 range=chr7:128218983-128259236 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	128218983	128219705	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22840_PI429285431	0.9197821	A	0.9092086	A	1.00735591450554	0	lncRNA	24419-1_{1..347}	lnc-OCA2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OCA2-2:2	chr15	 27786259	 27786605	-	lnc-OCA2-2	lnc-OCA2-2:2	ENSG00000259168.1	RP11-100M12.3	GABRG3	NA	chr15:27776259-27778373	inter
CUST_38873_PI429285431	1.1133468	A	1.4301434	A	0.80285057153745	0	lncRNA	39860-1_{1..1530}	n384758|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003lup.1||0.4815320|-0.2883901	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384758|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003lup.1||0.4815320|-0.2883901	chr5	151168141	151169670	+	NA	NA	NA	NA	G3BP1	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80chr5:151158141-151179671"	NA	inner
CUST_47297_PI429285431	5.0575767	P	2.8125806	A	4.74035826926173	0	lncRNA	51364-1_{1..3000}	"gi|371502113|ref|NR_045796.1| Homo sapiens CSE1 chromosome segregation 1-like (yeast) (CSE1L), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371502113|ref|NR_045796.1| Homo sapiens CSE1 chromosome segregation 1-like (yeast) (CSE1L), transcript variant 3, non-coding RNA"	Chr20	 47662783	 47665782	+	1434	NR_045796.1	NA	NA	NA	NA	NA	inter
CUST_16422_PI429285431	1.4073555	A	0.8979051	A	1.42350780173972	0	lncRNA	18121-1_{1..2340}	lnc-IRX3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRX3-3:1	chr16	 54927183	 54929522	-	lnc-IRX3-3	lnc-IRX3-3:1	XLOC_011949	linc-IRX3-1	NA	NA	NA	inter
CUST_48237_PI429285431	0.8964	A	0.91046077	A	0.990301157040337	0	lncRNA	52099-1_{1..813}	hg19_lincRNAsTranscripts_TCONS_l2_00001718 range=chr1:204336584-204347045 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001718 range=chr1:204336584-204347045 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	204336584	204337396	-	NA	NA	NA	NA	PLEKHA6	NA	chr1:204326584-204329044	inter
CUST_18863_PI429285431	5.3907785	P	5.6086483	P	0.859834080843853	0	lncRNA	20556-1_{1..837}	lnc-HSCB-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HSCB-1:7	chr22	 28381680	 28382516	+	lnc-HSCB-1	lnc-HSCB-1:7	ENSG00000235954	TTC28-AS1	TTC28	NA	chr22:28374002-28392330	inner
CUST_21330_PI429285431	0.8869182	A	0.9275243	A	0.97224640483785	0	lncRNA	22953-1_{1..404}	lnc-PTX4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PTX4-2:1	chr16	  1630184	  1630587	-	lnc-PTX4-2	lnc-PTX4-2:1	ENSG00000260954.1	LA16c-425C2.1	IFT140	NA	chr16:1620184-1640309	inner
CUST_45715_PI429285431	0.89195156	A	1.5505109	A	0.633510598206961	0	lncRNA	50082-1_{1..2881}	"gi|253970425|ref|NR_028044.1| Homo sapiens IGF2 antisense RNA (IGF2-AS), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|253970425|ref|NR_028044.1| Homo sapiens IGF2 antisense RNA (IGF2-AS), transcript variant 1, non-coding RNA"	Chr11	  2161758	  2164638	+	51214	NR_028044.1	NA	NA	NA	"hg19_refFlat_INS-IGF2:range=chr11:2168842-21822015'pad=0,hg19_refFlat_INS-IGF2:range=chr11:2168842-21822015'pad=0 3'pad=0 strand=- repeatMasking=none,-104.40"	NA	inter
CUST_48202_PI429285431	5.2205315	P	5.425355	P	0.867644828741764	0	lncRNA	52065-1_{1..801}	"gi|410170264|ref|XR_172493.1| PREDICTED: Homo sapiens uncharacterized LOC101060813 (LOC101060813), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170264|ref|XR_172493.1| PREDICTED: Homo sapiens uncharacterized LOC101060813 (LOC101060813), misc_RNA"	NA	NA	NA	NA	NA	XR_172493.1	NA	NA	NA	NA	NA	Unknown
CUST_39235_PI429285431	1.7424325	A	1.8364335	A	0.936920797448191	0	lncRNA	40207-1_{1..1387}	n386070|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010aqy.2||2.4618600|-0.1896104	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386070|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010aqy.2||2.4618600|-0.1896104	chr14	 70036531	 70037917	-	NA	NA	NA	NA	NA	NA	NA	inner
CUST_43913_PI429285431	3.6518035	P	3.8565779	P	0.867674358257586	0	lncRNA	48626-1_{1..766}	"gi|310118980|ref|XR_109927.1| PREDICTED: Homo sapiens uncharacterized LOC100506328 (LOC100506328), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118980|ref|XR_109927.1| PREDICTED: Homo sapiens uncharacterized LOC100506328 (LOC100506328), misc_RNA"	NA	NA	NA	NA	NA	XR_109927.1	NA	NA	NA	NA	NA	Unknown
CUST_31773_PI429285431	0.8921901	A	0.90431154	A	0.991633255708787	0	lncRNA	33514-1_{1..1594}	n338316|BC013111|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|710|NULL|-0.8147200|-0.1489457	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338316|BC013111|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|710|NULL|-0.8147200|-0.1489457	chr19	 13180605	 13182198	-	NA	NA	NA	NA	NFIX	NA	chr19:13170605-13192188	inner
CUST_11273_PI429285431	1.7964209	A	1.5777154	A	1.16368896418025	0	lncRNA	12834-1_{1..3000}	lnc-MTHFSD-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-MTHFSD-2:7	chr16	 86532030	 86535029	-	lnc-MTHFSD-2	lnc-MTHFSD-2:7	XLOC_012046	linc-COX4NB-9	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40"	NA	inter
CUST_20642_PI429285431	0.8980617	A	1.2983712	A	0.757695718073952	0	lncRNA	22281-1_{1..542}	lnc-LEKR1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LEKR1-4:1	chr3	156957379	156957920	+	lnc-LEKR1-4	lnc-LEKR1-4:1	ENSG00000243176.1	RP11-550I24.2	NA	NA	NA	inter
CUST_40784_PI429285431	1.7282724	A	1.3711252	A	1.28089054554538	0	lncRNA	41498-1_{1..3000}	n410532|NR_037687|lncRNA|Homosapiens||RefGeneNoncode|NR_037687||6.7736100|-0.2530751	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410532|NR_037687|lncRNA|Homosapiens||RefGeneNoncode|NR_037687||6.7736100|-0.2530751	chr12	 94656296	 94659295	+	NA	NA	NA	NA	CCDC41	NA	chr12:94702056-94711451	inner
LNCA_21_P0009557	5.931871	P	5.409551	P	1.4362630486336	0	lncRNA	TCONS_00026521	NA	NA	NA	NA	XLOC_012842	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012842), lincRNA [TCONS_00026521]"	chr18:47967351-47967292	hs|18q21.1	Agilent_HUMAN_G3V2	TCONS_00026521	TCONS_00026521	chr18	 47967292	 47967351	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27430_PI429285431	6.8440075	P	7.5449877	P	0.615154114885977	0	lncRNA	28995-1_{1..517}	n324600|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039768|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039768|0.3573380|-0.1604770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324600|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039768|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039768|0.3573380|-0.1604770	chr6	  6938422	  6938938	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40617_PI429285431	2.0173097	A	2.2840776	A	0.831179570558826	0	lncRNA	41361-2_{3001..6000}	n410097|NR_036528|lncRNA|Homosapiens||RefGeneNoncode|NR_036528||26.6855000|-0.1851142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410097|NR_036528|lncRNA|Homosapiens||RefGeneNoncode|NR_036528||26.6855000|-0.1851142	chr9	100003707	100006706	+	NA	NA	NA	NA	C9orf174	NA	chr9:100069910-100139577	inner
CUST_14403_PI429285431	0.89497715	A	0.9005742	A	0.99612793641873	0	lncRNA	16064-1_{1..540}	lnc-ZNF680-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF680-3:4	chr7	 63488894	 63489433	-	lnc-ZNF680-3	lnc-ZNF680-3:4	XLOC_006468	linc-ZNF479-7	NA	NA	NA	inter
CUST_34860_PI429285431	7.1545935	P	6.9973097	P	1.11518557107104	0	lncRNA	36286-1_{1..2277}	n341766|AK129714|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4242|NULL|-1.1424000|-0.3890834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341766|AK129714|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4242|NULL|-1.1424000|-0.3890834	chr9	118935544	118937820	+	NA	NA	NA	NA	PAPPA	NA	chr9:118925544-118947821	inner
LNCA_21_P0006726	4.001621	P	3.103636	P	1.86346148371272	0	lncRNA	ENST00000418372	NA	NA	NA	NA	XLOC_008700	NA	ENST00000418372	NA	NA	"BROAD Institute lincRNA (XLOC_008700), lincRNA [TCONS_00017907]"	chr10:4285204-4285145	hs|10p15.1	Agilent_HUMAN_G3V2	ENST00000418372	ENST00000418372	chr10	  4285145	  4285204	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37099_PI429285431	0.88267386	A	1.7808748	A	0.536555406021579	0	lncRNA	38224-1_{1..324}	n345542|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1091|NULL|-1.3200000|-0.0859786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345542|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1091|NULL|-1.3200000|-0.0859786	chr2	129212505	129212828	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12481_PI429285431	5.636601	P	6.1828284	P	0.68480854081039	0	lncRNA	14093-1_{1..3000}	lnc-WDR27-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR27-2:1	chr6	169788296	169791295	-	lnc-WDR27-2	lnc-WDR27-2:1	XLOC_005938	linc-THBS2-2	NA	NA	NA	inter
CUST_43998_PI429285431	1.500736	A	1.7335842	A	0.850953261878848	0	lncRNA	48693-2_{3001..6000}	"gi|365733615|ref|NR_045683.1| Homo sapiens myosin IIIB (MYO3B), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|365733615|ref|NR_045683.1| Homo sapiens myosin IIIB (MYO3B), transcript variant 4, non-coding RNA"	Chr2	171037655	171040654	+	140469	NR_045683.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10"	NA	inter
CUST_14336_PI429285431	2.8133895	A	3.3639681	P	0.68274625469071	0	lncRNA	15992-1_{1..269}	lnc-FAM76B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM76B-2:1	chr11	 95251124	 95251392	-	lnc-FAM76B-2	lnc-FAM76B-2:1	XLOC_009527	linc-SESN3-2	NA	NA	NA	inter
CUST_2488_PI429285431	2.3022606	A	2.118694	A	1.13568804150483	0	lncRNA	2480-1_{1..794}	"transcript_id ""ENST00000432171.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432171.2"" | genecode_v17"	chr6	 19535175	 19535968	-	ENSG00000226786.2	ENST00000432171.2	RP1-167F1.2	RP1-167F1.2-001	ID4	NA	chr6:19837617-19840915	inner
CUST_40505_PI429285431	1.4365293	A	2.3743975	A	0.522003650114814	0	lncRNA	41270-1_{1..2470}	n409478|NR_033864|lncRNA|Homosapiens||RefGeneNoncode|NR_033864||4.5251100|-0.1672039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409478|NR_033864|lncRNA|Homosapiens||RefGeneNoncode|NR_033864||4.5251100|-0.1672039	chr19	 15870143	 15872612	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43287_PI429285431	0.925637	A	0.92021334	A	1.00376647002495	0	lncRNA	48105-1_{1..360}	ENST00000602565 havana:sense_intronic chromosome:GRCh37:10:52102202:52102561:-1 gene:ENSG00000269991 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602565 havana:sense_intronic chromosome:GRCh37:10:52102202:52102561:-1 gene:ENSG00000269991 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr10	 52102202	 52102561	-	ENSG00000269991	ENST00000602565	NA	NA	SGMS1	NA	chr10:52092202-52112561	inner
CUST_35253_PI429285431	1.4655882	A	1.7931887	A	0.796860726271997	0	lncRNA	36654-1_{1..3000}	n342257|U66047|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4747|NULL|-0.6219030|-0.1892374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342257|U66047|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4747|NULL|-0.6219030|-0.1892374	chrX	149106845	149109844	-	NA	NA	NA	NA	CXorf40B	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60chrX:149100415-149106716"	NA	inter
LNCA_21_P0008083	5.9239044	P	6.14732	P	0.856535175451315	0	lncRNA	TCONS_00021834	NA	NA	NA	NA	XLOC_010430	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010430), lincRNA [TCONS_00021834]"	chr13:75146685-75146744	hs|13q22.1	Agilent_HUMAN_G3V2	TCONS_00021834	TCONS_00021834	chr13	 75146685	 75146744	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46333_PI429285431	3.6927123	P	3.6036344	P	1.06369010652946	0	lncRNA	50559-1_{1..1062}	"gi|298676478|ref|NR_033777.1| Homo sapiens testis expressed 21, pseudogene (TEX21P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|298676478|ref|NR_033777.1| Homo sapiens testis expressed 21, pseudogene (TEX21P), non-coding RNA"	Chr14	 64812191	 64813252	-	441687	NR_033777.1	NA	NA	NA	NA	NA	inter
CUST_23930_PI429285431	0.8802661	A	0.8781768	A	1.00144924154135	0	lncRNA	25487-1_{1..157}	lnc-YY1AP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YY1AP1-1:1	chr1	155680329	155680485	-	lnc-YY1AP1-1	lnc-YY1AP1-1:1	ENSG00000227673.1	RP11-243J18.2	DAP3	NA	chr1:155670329-155690354	inner
CUST_50017_PI429285431	0.8856941	A	0.8926917	A	0.995161377322633	0	lncRNA	53754-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00028087 range=chr8:8090820-8102146 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028087 range=chr8:8090820-8102146 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	  8090820	  8093819	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-63.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0,hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-60.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0,hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0 3'pad=0 strand=- repeatMasking=none,-94.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0,hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0,hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70"	NA	inter
CUST_7023_PI429285431	0.8847965	A	0.8858753	A	0.999252512329815	0	lncRNA	6970-1_{1..476}	"transcript_id ""ENST00000456091.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456091.1"" | genecode_v17"	chrX	 13354500	 13354975	+	ENSG00000226985.1	ENST00000456091.1	RP11-142G7.2	RP11-142G7.2-002	NA	NA	NA	inter
LNCA_19_P00317671	0.97775614	A	3.2527375	P	0.206615249044757	0	lncRNA	XR_132545	XR_132545	XR_132545	NA	NA	LOC286149	uncharacterized LOC286149	NA	THC2618341	NA	"PREDICTED: Homo sapiens hypothetical LOC286149 (LOC286149), miscRNA [XR_132545]"	chr8:96085552-96085493	hs|8q22.1	Agilent_HUMAN_G3V2	XR_132545	XR_132545	chr8	 96085493	 96085552	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10862_PI429285431	3.5360203	P	3.76926	P	0.850722372471219	0	lncRNA	12399-1_{1..415}	lnc-DNAJC11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAJC11-1:1	chr1	  6844718	  6845132	-	lnc-DNAJC11-1	lnc-DNAJC11-1:1	XLOC_000691	linc-DNAJC11-4	CAMTA1	NA	chr1:6845384-6854903	inter
LNCA_21_P0012771	3.1312664	P	1.8864266	A	2.36992236592964	0	lncRNA	ENST00000513843	NA	NA	NA	NA	XLOC_l2_011095	NA	ENST00000513843	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011095), lincRNA [TCONS_l2_00021855]"	chr4:34122593-34122534	hs|4p15.1	Agilent_HUMAN_G3V2	ENST00000513843	ENST00000513843	chr4	 34122534	 34122593	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49670_PI429285431	1.4125624	A	0.91912556	A	1.4077945831318	0	lncRNA	53449-1_{1..1597}	hg19_lincRNAsTranscripts_TCONS_l2_00026948 range=chr7:149244253-149317115 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026948 range=chr7:149244253-149317115 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	149244253	149245849	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2591_PI429285431	2.051887	A	2.3411794	A	0.81830331414739	0	lncRNA	2579-1_{1..430}	"transcript_id ""ENST00000451220.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451220.1"" | genecode_v17"	chr6	100448816	100449245	+	ENSG00000229315.1	ENST00000451220.1	RP11-14I4.3	RP11-14I4.3-001	MCHR2	NA	chr6:100438816-100442114	inter
CUST_25731_PI429285431	5.8229413	P	4.256259	P	2.96222720368837	0	lncRNA	27258-1_{1..138}	lnc-PPIAL4G-5:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPIAL4G-5:8	chr1	143237680	143237817	-	lnc-PPIAL4G-5	lnc-PPIAL4G-5:8	ENSG00000225278.1	BX571672.5	NA	NA	NA	inter
LNCA_21_P0007020	3.1296544	P	3.098757	P	1.02164742373228	0	lncRNA	BC039338	NA	BC039338	NA	Hs.623813	XLOC_008959	NA	NA	THC2692045	NA	"BROAD Institute lincRNA (XLOC_008959), lincRNA [TCONS_00019033]"	chr10:118920190-118920131	hs|10q25.3	Agilent_HUMAN_G3V2	BC039338	BC039338	chr10	118920131	118920190	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21788_PI429285431	1.9749103	A	3.264862	P	0.408964720783195	0	lncRNA	23398-1_{1..653}	lnc-CTDSPL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CTDSPL2-2:1	chr15	 44850916	 44851568	+	lnc-CTDSPL2-2	lnc-CTDSPL2-2:1	ENSG00000259659.1	RP11-151N17.1	EIF3J	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50chr15:44840916-44855001"	NA	inner
CUST_10821_PI429285431	0.8962474	A	1.0567732	A	0.894698932401166	0	lncRNA	12356-1_{1..810}	lnc-DMRTA2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRTA2-1:3	chr1	 50786689	 50787498	-	lnc-DMRTA2-1	lnc-DMRTA2-1:3	XLOC_000832	linc-AGBL4-1	NA	NA	NA	inter
CUST_23297_PI429285431	6.201527	P	6.618822	P	0.748827332527747	0	lncRNA	24868-1_{1..1088}	lnc-AGPAT6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGPAT6-1:1	chr8	 41522716	 41523803	+	lnc-AGPAT6-1	lnc-AGPAT6-1:1	ENSG00000253389.2	RP11-930P14.1	ANK1	"hg19_refFlat_ANK1:range=chr8:41518984-415225415'pad=0,hg19_refFlat_ANK1:range=chr8:41518984-415225415'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_ANK1:range=chr8:41518984-416550565'pad=0,hg19_refFlat_ANK1:range=chr8:41518984-416550565'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90chr8:41512716-41533084"	NA	inner
CUST_49628_PI429285431	1.3545381	A	1.5177758	A	0.893018705500374	0	lncRNA	53412-1_{1..403}	hg19_lincRNAsTranscripts_TCONS_l2_00025691 range=chr7:17029691-17052263 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025691 range=chr7:17029691-17052263 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 17029691	 17030093	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13511_PI429285431	7.3802695	P	7.6073503	P	0.854361889908126	0	lncRNA	15151-1_{1..2189}	lnc-SGTB-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SGTB-4:3	chr5	 65736080	 65738268	-	lnc-SGTB-4	lnc-SGTB-4:3	XLOC_004850	linc-SGTB-2	NA	NA	NA	inter
CUST_18762_PI429285431	3.6048741	P	3.554606	P	1.03545732785551	0	lncRNA	20458-1_{1..665}	lnc-GTF2F2-2:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2F2-2:13	chr13	 45953330	 45953994	+	lnc-GTF2F2-2	lnc-GTF2F2-2:13	ENSG00000170919	XXyac-R12DG2.2	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00"	NA	inter
CUST_45064_PI429285431	0.8849445	A	2.1439693	A	0.417826296944225	0	lncRNA	49552-2_{3001..3643}	"gi|253970408|ref|NR_028041.1| Homo sapiens glutamate receptor, metabotropic 8 (GRM8), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|253970408|ref|NR_028041.1| Homo sapiens glutamate receptor, metabotropic 8 (GRM8), transcript variant 3, non-coding RNA"	Chr7	126081652	126082294	-	2918	NR_028041.1	NA	NA	NA	NA	NA	inter
CUST_39003_PI429285431	5.6052194	P	5.8275814	P	0.857160931445065	0	lncRNA	39984-1_{1..3000}	n385304|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wfx.2||3.5549900|-0.1968885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385304|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wfx.2||3.5549900|-0.1968885	chr7	149244244	149247243	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30914_PI429285431	6.6458273	P	6.3401814	P	1.2359718625321	0	lncRNA	32702-1_{1..422}	n336961|BC104482|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000337776|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000337776|2.0784000|-0.1923158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336961|BC104482|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000337776|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000337776|2.0784000|-0.1923158	chr10	 60145194	 60145615	+	NA	NA	NA	NA	TFAM	NA	chr10:60145176-60155897	inter
CUST_22939_PI429285431	4.3107657	P	4.276758	P	1.02385236495279	0	lncRNA	24515-1_{1..2674}	lnc-MASP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MASP1-1:1	chr3	186925074	186927747	-	lnc-MASP1-1	lnc-MASP1-1:1	ENSG00000198491.3	RP11-208N14.4	MASP1	"hg19_refFlat_RTP2:range=chr3:187416286-1874199165'pad=0,hg19_refFlat_RTP2:range=chr3:187416286-1874199165'pad=0 3'pad=0 strand=- repeatMasking=none,-103.70;hg19_refFlat_RTP1:range=chr3:186915304-1869178585'pad=0,hg19_refFlat_RTP1:range=chr3:186915304-1869178585'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.70chr3:186933873-186935417"	NA	inter
CUST_21121_PI429285431	0.89562815	A	0.9078656	A	0.991553519696959	0	lncRNA	22747-1_{1..927}	lnc-RP11-503N18.3.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-503N18.3.1-2:2	chr4	  2451661	  2452587	+	lnc-RP11-503N18.3.1-2	lnc-RP11-503N18.3.1-2:2	ENSG00000249391.1	RP11-503N18.2	LOC402160	NA	chr4:2441661-2462087	inner
CUST_49119_PI429285431	0.89669013	A	0.9167219	A	0.986210986620112	0	lncRNA	52942-1_{1..421}	hg19_lincRNAsTranscripts_TCONS_l2_00020559 range=chr4:69650341-69652061 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020559 range=chr4:69650341-69652061 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 69650341	 69650761	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16948_PI429285431	5.5723286	P	5.297053	P	1.21022525811888	0	lncRNA	18661-1_{1..3000}	lnc-USP34-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-USP34-1:5	chr2	 61371906	 61374905	-	lnc-USP34-1	lnc-USP34-1:5	XLOC_002111	linc-PUS10	KIAA1841	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70chr2:61361906-61365169"	NA	inter
CUST_16189_PI429285431	1.0961753	A	0.90433216	A	1.14222204964384	0	lncRNA	17894-1_{1..696}	lnc-RFX8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RFX8-1:1	chr2	102184276	102184971	-	lnc-RFX8-1	lnc-RFX8-1:1	XLOC_002229	linc-RFX8	NA	NA	NA	inter
CUST_11889_PI429285431	1.7187142	A	2.059351	A	0.789692667640827	0	lncRNA	13471-1_{1..1157}	lnc-HECA-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HECA-3:4	chr6	140414128	140415284	+	lnc-HECA-3	lnc-HECA-3:4	XLOC_005485	linc-VTA1-2	NA	NA	NA	inter
CUST_25657_PI429285431	0.8994168	A	0.90355206	A	0.997137760231402	0	lncRNA	27186-1_{1..1006}	lnc-NSUN6-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NSUN6-5:2	chr10	 18296058	 18297063	-	lnc-NSUN6-5	lnc-NSUN6-5:2	ENSG00000226083.1	RP11-110H10.2	SLC39A12	"hg19_refFlat_SLC39A12:range=chr10:18242206-183317625'pad=0,hg19_refFlat_SLC39A12:range=chr10:18242206-183317625'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30chr10:18286058-18306199"	NA	inner
CUST_11077_PI429285431	2.4861379	A	2.0506024	A	1.3524127288584	0	lncRNA	12629-1_{1..619}	lnc-PIK3R1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIK3R1-5:2	chr5	 67950900	 67951518	+	lnc-PIK3R1-5	lnc-PIK3R1-5:2	XLOC_004415	linc-SLC30A5-3	NA	NA	NA	inter
CUST_46290_PI429285431	7.579368	P	7.523785	P	1.03927899608897	0	lncRNA	50525-1_{1..3000}	"gi|254553335|ref|NR_028099.1| Homo sapiens DDB1 and CUL4 associated factor 11 (DCAF11), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254553335|ref|NR_028099.1| Homo sapiens DDB1 and CUL4 associated factor 11 (DCAF11), transcript variant 4, non-coding RNA"	Chr14	 24583986	 24586985	+	80344	NR_028099.1	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60"	NA	inter
CUST_14601_PI429285431	1.9597454	A	1.8607563	A	1.07102273125827	0	lncRNA	16268-1_{1..872}	lnc-CPO-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPO-1:2	chr2	207790997	207791868	+	lnc-CPO-1	lnc-CPO-1:2	XLOC_001823	linc-CPO-1	NA	NA	NA	inter
CUST_254_PI429201921	0.88966143	A	0.9003829	A	0.992595989037404	0	lncRNA	190-1_{1..3000}	TC07002344.hg.1	TCONS_l2_00025913-XLOC_l2_013430 // Broad TUCP // linc-ZNF727-12 chr7:+:62910802-62917227 // chr7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr7:+:62910802-62917227	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00025913-XLOC_l2_013430	linc-ZNF727-12	chr7	 62910802	 62917227	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30140_PI429285431	8.446308	P	6.314628	P	4.38227493829663	0	lncRNA	31914-1_{1..298}	n334788|AJ227918|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245067|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245067|-1.3029100|-0.2594663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334788|AJ227918|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245067|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245067|-1.3029100|-0.2594663	chr1	113213936	113214233	+	NA	NA	NA	NA	CAPZA1	NA	chr1:113203936-113214241	inner
CUST_30798_PI429285431	9.733964	P	9.479066	P	1.19325137596899	0	lncRNA	32585-1_{1..276}	n336688|Z70222|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327868|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327868|0.8099440|-0.2726691	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336688|Z70222|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327868|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327868|0.8099440|-0.2726691	chr13	 38924017	 38924292	+	NA	NA	NA	NA	UFM1	NA	chr13:38923942-38937143	inner
CUST_50421_PI429285431	5.320985	P	5.4953876	P	0.886134379093161	0	lncRNA	54125-1_{1..883}	hg19_lincRNAsTranscripts_TCONS_l2_00030465 range=chrX:25212221-25213284 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030465 range=chrX:25212221-25213284 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 25212221	 25213103	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22310_PI429285431	5.0113835	P	5.244823	P	0.850604563401523	0	lncRNA	23909-1_{1..250}	lnc-PPP1R14D-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP1R14D-1:5	chr15	 41132578	 41132827	-	lnc-PPP1R14D-1	lnc-PPP1R14D-1:5	ENSG00000261183.1	RP11-532F12.5	SPINT1	NA	chr15:41136246-41142691	inter
LNCA_21_P0005393	0.8949704	A	0.9065983	A	0.991972547371529	0	lncRNA	TCONS_00013495	NA	NA	NA	NA	XLOC_006142	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006142), lincRNA [TCONS_00013495]"	chr7:69062249-69062308	hs|7q11.22	Agilent_HUMAN_G3V2	TCONS_00013495	TCONS_00013495	chr7	 69062249	 69062308	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00803226	9.063194	P	9.501734	P	0.737880962687575	0	lncRNA	XR_133508	XR_133508	XR_133508	NA	NA	LOC100507316	uncharacterized LOC100507316	NA	THC2519157	NA	"PREDICTED: Homo sapiens hypothetical LOC100507316, transcript variant 2 (LOC100507316), miscRNA [XR_133508]"	chr8:144363045-144362986	hs|8q24.3	Agilent_HUMAN_G3V2	XR_133508	XR_133508	chr8	144362986	144363045	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3808_PI429285431	3.2448497	P	3.7703934	P	0.694697254111462	0	lncRNA	3776-1_{1..2378}	"transcript_id ""ENST00000436932.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436932.1"" | genecode_v17"	chr10	116524547	116526924	+	ENSG00000228484.1	ENST00000436932.1	RP11-106M7.1	RP11-106M7.1-001	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90"	NA	inter
CUST_35286_PI429285431	5.9192657	P	4.5357246	P	2.60907985357846	0	lncRNA	36689-1_{1..634}	n342306|CR599828|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4798|NULL|-1.1797500|-0.4010664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342306|CR599828|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4798|NULL|-1.1797500|-0.4010664	chr1	149265841	149266474	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_305_PI429285431	4.1379185	P	5.2752633	P	0.45459546589639	0	lncRNA	298-1_{1..751}	"transcript_id ""ENST00000471417.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000471417.1"" | genecode_v17"	chr1	 87595537	 87596287	+	ENSG00000267272.1	ENST00000471417.1	RP5-1052I5.1	RP5-1052I5.1-006	NA	NA	NA	inter
CUST_2184_PI429285431	4.5138245	P	4.8243837	P	0.806329159088119	0	lncRNA	2176-1_{1..417}	"transcript_id ""ENST00000513197.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513197.1"" | genecode_v17"	chr5	 68259073	 68259489	+	ENSG00000250066.1	ENST00000513197.1	RP11-141O11.1	RP11-141O11.1-001	NA	NA	NA	inter
CUST_38542_PI429285431	4.5407004	P	5.2703686	P	0.603042589392419	0	lncRNA	39550-1_{1..1696}	n383244|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jyx.1||-0.3619930|-0.0992759	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383244|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jyx.1||-0.3619930|-0.0992759	chr17	 78977134	 78978829	+	NA	NA	NA	NA	CHMP6	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40chr17:78967134-78973933"	NA	inter
CUST_44804_PI429285431	5.540099	P	5.751429	P	0.863740594014557	0	lncRNA	49338-2_{3001..3469}	"gi|373838769|ref|NR_046100.1| Homo sapiens uncharacterized LOC285762 (LOC285762), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|373838769|ref|NR_046100.1| Homo sapiens uncharacterized LOC285762 (LOC285762), non-coding RNA"	Chr6	119776712	119777180	-	285762	NR_046100.1	NA	NA	NA	NA	NA	inter
CUST_18476_PI429285431	0.89233756	A	1.221454	A	0.796023849055224	0	lncRNA	20196-2_{3001..4159}	lnc-TMEM132D-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132D-3:5	chr12	130649507	130650665	-	lnc-TMEM132D-3	lnc-TMEM132D-3:5	ENSG00000250208	RP11-143E21.7	FZD10	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr12:130647004-130650285"	NA	inter
CUST_8562_PI429285431	0.8924826	A	2.024622	A	0.456238658210638	0	lncRNA	10121-1_{1..972}	lnc-MBL2-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBL2-4:3	chr10	 54214866	 54215837	-	lnc-MBL2-4	lnc-MBL2-4:3	ENSG00000231131	RP11-346D6.6	NA	NA	NA	inter
CUST_34007_PI429285431	2.3100553	A	3.0433025	P	0.601548431261385	0	lncRNA	35544-1_{1..763}	n340821|BC040916|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3285|NULL|-0.5072760|-0.2465734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340821|BC040916|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3285|NULL|-0.5072760|-0.2465734	chr6	  4135659	  4136421	+	NA	NA	NA	NA	C6orf201	NA	chr6:4125659-4130999	inner
CUST_2119_PI429285431	0.89767563	A	0.90119946	A	0.997560447726843	0	lncRNA	2110-1_{1..523}	"transcript_id ""ENST00000512849.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512849.1"" | genecode_v17"	chr5	 28286496	 28287018	-	ENSG00000249785.1	ENST00000512849.1	CTD-2061E9.1	CTD-2061E9.1-001	NA	NA	NA	inter
LNCA_21_P0003893	0.88111115	A	0.8839012	A	0.998067953518155	0	lncRNA	TCONS_00009040	NA	NA	NA	NA	XLOC_003932	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003932), lincRNA [TCONS_00009040]"	chr4:39540733-39540674	hs|4p14	Agilent_HUMAN_G3V2	TCONS_00009040	TCONS_00009040	chr4	 39540674	 39540733	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007882	0.8809987	A	0.8835946	A	0.998202277077085	0	lncRNA	BC042465	NA	BC042465	NA	Hs.569096	XLOC_010123	NA	NA	THC2621465	NA	"BROAD Institute lincRNA (XLOC_010123), lincRNA [TCONS_00021357]"	chr12:70119058-70109367	hs|12q15	Agilent_HUMAN_G3V2	BC042465	BC042465	chr12	 70109367	 70119058	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007955	2.7779648	A	2.706146	A	1.05104089188052	0	lncRNA	ENST00000422074	NA	NA	NA	NA	XLOC_010464	NA	ENST00000422074	NA	NA	"BROAD Institute lincRNA (XLOC_010464), lincRNA [TCONS_00021582]"	chr13:88453473-88453532	hs|13q31.2	Agilent_HUMAN_G3V2	ENST00000422074	ENST00000422074	chr13	 88453473	 88453532	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32874_PI429285431	3.5061398	P	3.8568401	P	0.784203344586709	0	lncRNA	34503-1_{1..1515}	n339540|BC033767|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1982|NULL|-0.9895890|-0.1613215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339540|BC033767|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1982|NULL|-0.9895890|-0.1613215	chr21	 46707980	 46709494	+	NA	NA	NA	NA	POFUT2	NA	chr21:46697980-46707811	inter
CUST_22473_PI429285431	0.87777025	A	0.8791815	A	0.999022274326961	0	lncRNA	24060-1_{1..200}	lnc-YPEL5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YPEL5-2:1	chr2	 30129993	 30130192	+	lnc-YPEL5-2	lnc-YPEL5-2:1	ENSG00000197644.2	AC106870.2	ALK	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90chr2:30119993-30140065"	NA	inner
CUST_5834_PI429285431	7.697709	P	7.992979	P	0.814919806101627	0	lncRNA	5763-1_{1..607}	"transcript_id ""ENST00000592914.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592914.1"" | genecode_v17"	chr17	 36009162	 36009768	+	ENSG00000267380.1	ENST00000592914.1	RP11-697E22.3	RP11-697E22.3-001	DDX52	NA	chr17:35999162-36003493	inter
CUST_49935_PI429285431	0.9043791	A	0.8972518	A	1.00495249114388	0	lncRNA	53685-1_{1..377}	hg19_lincRNAsTranscripts_TCONS_l2_00026155 range=chr7:108244553-108254723 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026155 range=chr7:108244553-108254723 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	108244553	108244929	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41505_PI429285431	1.9198128	A	1.816274	A	1.07440565251027	0	lncRNA	42726-1_{1..97}	ENST00000578518 ncrna:miRNA chromosome:GRCh37:X:32601773:32601869:-1 gene:ENSG00000263600 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578518 ncrna:miRNA chromosome:GRCh37:X:32601773:32601869:-1 gene:ENSG00000263600 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 32601773	 32601869	-	ENSG00000263600	ENST00000578518	NA	NA	DMD	NA	chrX:32591773-32611869	inner
CUST_26411_PI429285431	3.0746143	P	3.4418066	P	0.775289859366304	0	lncRNA	27918-1_{1..706}	lnc-CFC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CFC1-2:1	chr2	131513256	131513961	-	lnc-CFC1-2	lnc-CFC1-2:1	ENSG00000229797.1	AC140481.8	FAM123C	NA	chr2:131513077-131523452	inner
CUST_14194_PI429285431	2.2025752	A	1.7733337	A	1.34652545209972	0	lncRNA	15846-1_{1..337}	lnc-ZNF99-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF99-1:1	chr19	 23096927	 23097263	-	lnc-ZNF99-1	lnc-ZNF99-1:1	XLOC_013270	linc-ZNF99-2	NA	NA	NA	inter
LNCA_21_P0007364	0.883172	A	0.88340855	A	0.999836049475795	0	lncRNA	TCONS_00019671	NA	NA	NA	NA	XLOC_009475	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009475), lincRNA [TCONS_00019671]"	chr11:65582320-65582261	hs|11q13.1	Agilent_HUMAN_G3V2	TCONS_00019671	TCONS_00019671	chr11	 65582261	 65582320	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33365_PI429285431	0.89387196	A	1.1387863	A	0.843865899169773	0	lncRNA	34945-1_{1..2959}	n340083|AK055362|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2538|NULL|-1.2613600|-0.2858256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340083|AK055362|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2538|NULL|-1.2613600|-0.2858256	chr10	 78629363	 78632321	-	NA	NA	NA	NA	KCNMA1	NA	chr10:78619363-78642322	inner
CUST_17282_PI429285431	0.87949735	A	0.88126516	A	0.998775397920582	0	lncRNA	19000-1_{1..494}	lnc-TXNRD1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TXNRD1-3:1	chr12	104795399	104795892	+	lnc-TXNRD1-3	lnc-TXNRD1-3:1	XLOC_009864	linc-CHST11-1	NA	NA	NA	inter
CUST_47773_PI429285431	0.97736835	A	1.5754169	A	0.660646970167907	0	lncRNA	51703-2_{3001..5737}	"gi|385137102|ref|NR_047640.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 70, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137102|ref|NR_047640.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 70, non-coding RNA"	ChrY	 15363259	 15365995	-	7404	NR_047640.1	NA	NA	NA	NA	NA	inter
CUST_13318_PI429285431	1.2024208	A	0.8896147	A	1.24212132792068	0	lncRNA	14952-1_{1..769}	lnc-RAB11FIP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB11FIP2-2:1	chr10	119589978	119590746	-	lnc-RAB11FIP2-2	lnc-RAB11FIP2-2:1	XLOC_008963	linc-PDZD8-2	NA	NA	NA	inter
CUST_37178_PI429285431	0.8811524	A	0.8839351	A	0.998073038319819	0	lncRNA	38293-1_{1..1834}	n345612|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1161|NULL|-1.3098700|-0.3727178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345612|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1161|NULL|-1.3098700|-0.3727178	chr3	194192714	194194547	-	NA	NA	NA	NA	ATP13A3	NA	chr3:194182714-194188968	inter
LNCA_21_P0007901	2.4782414	A	1.9641573	A	1.42808722571541	0	lncRNA	TCONS_00021437	NA	NA	NA	NA	XLOC_010244	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010244), lincRNA [TCONS_00021437]"	chr12:127215860-127215317	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00021437	TCONS_00021437	chr12	127215317	127215860	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1006_PI429285431	1.632194	A	2.6096742	A	0.507866000530203	0	lncRNA	995-1_{1..491}	"transcript_id ""ENST00000455614.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455614.1"" | genecode_v17"	chr2	107882609	107883099	-	ENSG00000229457.1	ENST00000455614.1	AC006227.1	AC006227.1-001	NA	NA	NA	inter
CUST_37297_PI429285431	8.762366	P	9.040479	P	0.824668953363912	0	lncRNA	38405-1_{1..507}	n345739|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1288|NULL|-1.3224700|-0.0995020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345739|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1288|NULL|-1.3224700|-0.0995020	chr1	    14777	    15283	-	NA	NA	NA	NA	LOC100652771	NA	chr1:12190-13639	inter
LNCA_21_P0003087	1.8615217	A	2.1682136	A	0.808493511150086	0	lncRNA	TCONS_00006373	NA	NA	NA	NA	XLOC_002989	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002989), lincRNA [TCONS_00006373]"	chr3:194682071-194686205	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00006373	TCONS_00006373	chr3	194682071	194686205	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5193_PI429285431	3.6267047	P	4.0401855	P	0.75080970305211	0	lncRNA	5134-1_{1..2141}	"transcript_id ""ENST00000502027.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502027.1"" | genecode_v17"	chr15	 57596923	 57599063	+	ENSG00000247982.2	ENST00000502027.1	RP11-358M11.2	RP11-358M11.2-002	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_20530_PI429285431	0.911047	A	1.980192	A	0.476601368777021	0	lncRNA	22172-1_{1..542}	lnc-ZNF217-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF217-1:1	chr20	 52120648	 52121189	-	lnc-ZNF217-1	lnc-ZNF217-1:1	ENSG00000259723.1	RP5-823G15.5	TSHZ2	NA	chr20:52110648-52111869	inter
CUST_18264_PI429285431	3.571332	P	3.0755877	P	1.4100480246192	0	lncRNA	19998-1_{1..1304}	lnc-SETD4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SETD4-4:1	chr21	 37648503	 37649806	-	lnc-SETD4-4	lnc-SETD4-4:1	ENSG00000255739	AP000689.1	DOPEY2	"hg19_refFlat_MEMO1:range=chr2:32093430-322353165'pad=0,hg19_refFlat_MEMO1:range=chr2:32093430-322353165'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80chr21:37638503-37658524"	NA	inner
CUST_31885_PI429285431	2.9519293	P	0.88670015	A	4.18500443020683	0	lncRNA	33617-1_{1..2269}	n338440|AK093982|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|837|NULL|-1.2600600|-0.4472134	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338440|AK093982|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|837|NULL|-1.2600600|-0.4472134	chr1	197473880	197476148	-	NA	NA	NA	NA	DENND1B	NA	chr1:197473878-197486148	inner
LNCA_21_P0007332	2.8237393	A	3.577496	P	0.593057256054837	0	lncRNA	TCONS_00019600	NA	NA	NA	NA	XLOC_009403	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009403), lincRNA [TCONS_00019600]"	chr11:30382095-30382036	hs|11p14.1	Agilent_HUMAN_G3V2	TCONS_00019600	TCONS_00019600	chr11	 30382036	 30382095	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40787_PI429285431	4.299779	P	4.0145187	P	1.21863011665566	0	lncRNA	41499-2_{3001..3481}	n410541|NR_037705|lncRNA|Homosapiens||RefGeneNoncode|NR_037705||7.8361200|-0.2412502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410541|NR_037705|lncRNA|Homosapiens||RefGeneNoncode|NR_037705||7.8361200|-0.2412502	chr16	 89287110	 89287590	+	NA	NA	NA	NA	ZNF778	NA	chr16:89284111-89295965	inter
CUST_11251_PI429285431	1.3899734	A	1.0653296	A	1.25235519517221	0	lncRNA	12809-1_{1..203}	lnc-RAB3IP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB3IP-1:1	chr12	 70220763	 70220965	+	lnc-RAB3IP-1	lnc-RAB3IP-1:1	XLOC_009800	linc-CNOT2	RAB3IP	NA	chr12:70210763-70216984	inter
CUST_21424_PI429285431	1.8452717	A	2.1442685	A	0.812817404869017	0	lncRNA	23044-1_{1..532}	lnc-TMEM14C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM14C-1:1	chr6	 10884089	 10884620	+	lnc-TMEM14C-1	lnc-TMEM14C-1:1	ENSG00000235051.1	RP11-637O19.2	GCM2	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr6:10874089-10882098"	NA	inter
CUST_23057_PI429285431	0.91539544	A	1.2492175	A	0.793431697918588	0	lncRNA	24628-1_{1..478}	lnc-PSMA2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PSMA2-2:2	chr7	 43288782	 43289259	-	lnc-PSMA2-2	lnc-PSMA2-2:2	ENSG00000228680.1	AC004692.4	HECW1	NA	chr7:43278782-43298846	inner
CUST_6679_PI429285431	1.5072942	A	2.128489	A	0.650132283189893	0	lncRNA	6627-1_{1..3000}	"transcript_id ""ENST00000380888.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000380888.3"" | genecode_v17"	chr20	 29513582	 29516581	-	ENSG00000205611.3	ENST00000380888.3	RP4-610C12.4	RP4-610C12.4-001	NA	NA	NA	inter
CUST_7675_PI429285431	3.1493216	P	3.437704	P	0.818819633185876	0	lncRNA	9308-1_{1..473}	lnc-CYB5R2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYB5R2-2:1	chr11	  7533354	  7533826	-	lnc-CYB5R2-2	lnc-CYB5R2-2:1	ENSG00000251364	ENSG00000251364.2	PPFIBP2	NA	chr11:7535001-7543746	inter
CUST_35859_PI429285431	3.555456	P	3.5142314	P	1.02898688898515	0	lncRNA	37254-1_{1..412}	n344525|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_73|NULL|-1.3506800|-0.2505366	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344525|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_73|NULL|-1.3506800|-0.2505366	chr11	 35071625	 35072036	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2293_PI429285431	0.9065034	A	0.9220049	A	0.989312698373727	0	lncRNA	2285-1_{1..360}	"transcript_id ""ENST00000524159.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524159.1"" | genecode_v17"	chr5	104074962	104075321	-	ENSG00000251574.2	ENST00000524159.1	RP11-6N13.1	RP11-6N13.1-006	NA	NA	NA	inter
CUST_32737_PI429285431	0.88676393	A	0.9190745	A	0.977852947680165	0	lncRNA	34377-1_{1..1997}	n339365|AK127918|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1797|NULL|0.5958900|-0.1556658	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339365|AK127918|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1797|NULL|0.5958900|-0.1556658	chr3	 52251031	 52253027	-	NA	NA	NA	NA	ALAS1	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00chr3:52241031-52248343"	NA	inter
CUST_28156_PI429285431	0.9096673	A	1.1993246	A	0.818096367348632	0	lncRNA	29781-1_{1..623}	n325432|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323599|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323599|-1.0492700|-0.2219418	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325432|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323599|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323599|-1.0492700|-0.2219418	chr2	 12064692	 12065314	+	NA	NA	NA	NA	NA	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80"	NA	inter
CUST_1310_PI429285431	2.828959	A	2.924224	A	0.936100284994186	0	lncRNA	1300-1_{1..613}	"transcript_id ""ENST00000525575.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525575.1"" | genecode_v17"	chr3	 14313873	 14314485	-	ENSG00000255021.1	ENST00000525575.1	RP11-536I6.2	RP11-536I6.2-001	NA	NA	NA	inter
CUST_29187_PI429285431	3.4249206	P	3.35355	P	1.05071441722882	0	lncRNA	30932-1_{1..1007}	n326700|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021790|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021790|-0.0445515|-0.1976212	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326700|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021790|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021790|-0.0445515|-0.1976212	chr1	 13856392	 13857398	-	NA	NA	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90"	NA	inter
CUST_35553_PI429285431	0.89182943	A	0.9050439	A	0.990882248477019	0	lncRNA	36967-1_{1..3000}	n342682|CR749489|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5184|NULL|-0.9425640|-0.2877286	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342682|CR749489|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5184|NULL|-0.9425640|-0.2877286	chr5	110847923	110850922	+	NA	NA	NA	NA	C5orf13	NA	chr5:111065000-111085423	inner
CUST_33572_PI429285431	2.763317	A	3.4153907	P	0.636364958137314	0	lncRNA	35137-1_{1..291}	n340323|AF009296|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2784|NULL|-1.3121700|-0.3919496	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340323|AF009296|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2784|NULL|-1.3121700|-0.3919496	chr5	  8754980	  8755270	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30"	NA	inter
CUST_16776_PI429285431	3.0985892	A	3.2284575	A	0.913914875410779	0	lncRNA	18485-1_{1..534}	lnc-TK2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TK2-5:1	chr16	 66048118	 66048651	-	lnc-TK2-5	lnc-TK2-5:1	XLOC_011979	linc-CDH11-5	NA	NA	NA	inter
CUST_25542_PI429285431	0.9097408	A	0.9157198	A	0.99586424887938	0	lncRNA	27072-1_{1..352}	lnc-NAPG-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NAPG-4:1	chr18	 10894510	 10894861	+	lnc-NAPG-4	lnc-NAPG-4:1	ENSG00000263952.1	RP11-513M1.1	FAM38B	NA	chr18:10884510-10904803	inner
CUST_1450_PI429285431	5.266217	P	5.7479954	P	0.716094355259849	0	lncRNA	1439-1_{1..614}	"transcript_id ""ENST00000601985.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601985.1"" | genecode_v17"	chr3	125546081	125546694	-	ENSG00000241288.2	ENST00000601985.1	RP11-379B18.5	RP11-379B18.5-006	NA	NA	NA	inter
CUST_6309_PI429285431	0.88598746	A	0.8985958	A	0.991298642535273	0	lncRNA	6233-1_{1..587}	"transcript_id ""ENST00000589639.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589639.1"" | genecode_v17"	chr19	  4769179	  4769765	+	ENSG00000176840.7	ENST00000589639.1	MIR7-3HG	MIR7-3HG-003	NA	NA	NA	inter
CUST_44426_PI429285431	5.65498	P	5.309019	P	1.27099733030084	0	lncRNA	49038-2_{3001..4671}	"gi|335353790|ref|NR_038380.1| Homo sapiens SLC7A11 antisense RNA 1 (SLC7A11-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|335353790|ref|NR_038380.1| Homo sapiens SLC7A11 antisense RNA 1 (SLC7A11-AS1), non-coding RNA"	Chr4	139013168	139014838	+	641364	NR_038380.1	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00"	NA	inter
CUST_5620_PI429285431	1.0324509	A	1.010319	A	1.01545893608914	0	lncRNA	5548-1_{1..444}	"transcript_id ""ENST00000564405.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564405.1"" | genecode_v17"	chr16	 75872734	 75873177	-	ENSG00000261313.1	ENST00000564405.1	RP11-2C15.1	RP11-2C15.1-002	NA	NA	NA	inter
CUST_49729_PI429285431	4.2777286	P	3.8536873	P	1.34168063259521	0	lncRNA	53502-1_{1..247}	hg19_lincRNAsTranscripts_TCONS_l2_00025773 range=chr7:29725668-29729774 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025773 range=chr7:29725668-29729774 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 29725668	 29725914	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3713_PI429285431	1.2470329	A	1.041835	A	1.15284447604177	0	lncRNA	3681-1_{1..755}	"transcript_id ""ENST00000599409.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599409.1"" | genecode_v17"	chr10	 67330260	 67331014	+	ENSG00000228065.5	ENST00000599409.1	RP11-222A11.1	RP11-222A11.1-003	NA	NA	NA	inter
LNCA_21_P0001987	3.9592013	P	4.68537	P	0.604507146387689	0	lncRNA	ENST00000439196	NA	NA	NA	NA	XLOC_001930	NA	ENST00000439196	NA	NA	"BROAD Institute lincRNA (XLOC_001930), lincRNA [TCONS_00003144]"	chr2:692330-692271	hs|2p25.3	Agilent_HUMAN_G3V2	ENST00000439196	ENST00000439196	chr2	   692271	   692330	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10464_PI429285431	1.1734965	A	0.9101721	A	1.20024123461073	0	lncRNA	11990-1_{1..795}	lnc-C15orf2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-2:3	chr15	 24758127	 24758921	+	lnc-C15orf2-2	lnc-C15orf2-2:3	XLOC_011181	linc-C15orf2-1	NA	NA	NA	inter
CUST_10000_PI429285431	1.3264085	A	1.2855248	A	1.02874377441138	0	lncRNA	11526-1_{1..921}	lnc-RPIA-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPIA-3:1	chr2	 89115875	 89116795	+	lnc-RPIA-3	lnc-RPIA-3:1	XLOC_001564	linc-TEKT4-7	NA	"hg19_refFlat_MALL:range=chr2:110843272-1108733695'pad=0,hg19_refFlat_MALL:range=chr2:110843272-1108733695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90"	NA	inter
CUST_2935_PI429285431	6.182606	P	6.3803463	P	0.871915179144108	0	lncRNA	2916-1_{1..327}	"transcript_id ""ENST00000453087.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453087.1"" | genecode_v17"	chr7	134030823	134031149	-	ENSG00000229177.1	ENST00000453087.1	AC008154.5	AC008154.5-001	NA	NA	NA	inter
CUST_50_PI429285431	0.89303255	A	0.9050572	A	0.991699786333634	0	lncRNA	49-1_{1..1455}	"transcript_id ""ENST00000533812.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000533812.2"" | genecode_v17"	chr11	130714086	130715540	-	ENSG00000254842.2	ENST00000533812.2	RP11-890B15.2	RP11-890B15.2-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60"	NA	inter
CUST_9356_PI429285431	0.878937	A	0.882121	A	0.997795452968207	0	lncRNA	10860-1_{1..679}	lnc-CLEC2D-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLEC2D-4:1	chr12	  9519787	  9520465	+	lnc-CLEC2D-4	lnc-CLEC2D-4:1	XLOC_009652	linc-CLEC2D-3	NA	NA	NA	inter
LNCA_33_P3331916	4.8010626	P	6.7152915	P	0.265313703856901	0	lncRNA	XR_132736	XR_132736	XR_132736	   440132	Hs.729493	LOC440132	hCG1815504	ENST00000440633	THC2652493	NA	"PREDICTED: Homo sapiens hCG1815504 (LOC440132), miscRNA [XR_132736]"	chr13:31457440-31457499	hs|13q12.3	Agilent_HUMAN_G3V2	XR_132736	XR_132736	chr13	 31457440	 31457499	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34624_PI429285431	2.173903	A	2.7130947	A	0.688156355039729	0	lncRNA	36078-1_{1..3000}	n341516|BC040302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3986|NULL|-1.1417200|-0.3581235	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341516|BC040302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3986|NULL|-1.1417200|-0.3581235	chr8	 64378406	 64381405	+	NA	NA	NA	NA	NA	"hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10"	NA	inter
CUST_22202_PI429285431	2.8758416	A	2.846809	A	1.02032771492326	0	lncRNA	23802-1_{1..672}	lnc-FAM192A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM192A-2:1	chr16	 57092331	 57093002	-	lnc-FAM192A-2	lnc-FAM192A-2:1	ENSG00000260145.1	RP11-322D14.2	NLRC5	NA	chr16:57082331-57102409	inner
CUST_9579_PI429285431	8.677706	P	9.372383	P	0.617847630847656	0	lncRNA	11095-1_{1..1871}	lnc-CD47-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CD47-2:2	chr3	107596749	107598619	-	lnc-CD47-2	lnc-CD47-2:2	XLOC_003208	linc-CBLB-9	NA	NA	NA	inter
CUST_20591_PI429285431	4.6849413	P	4.3598213	P	1.2527686366564	0	lncRNA	22230-1_{1..668}	lnc-DTYMK-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DTYMK-4:1	chr2	242694547	242695214	-	lnc-DTYMK-4	lnc-DTYMK-4:1	ENSG00000234793.1	AC114730.7	D2HGDH	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80chr2:242684547-242705155"	NA	inner
LNCA_21_P0009563	0.88080144	A	1.5969734	A	0.608710450623938	0	lncRNA	TCONS_00026535	NA	NA	NA	NA	XLOC_012858	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012858), lincRNA [TCONS_00026535]"	chr18:57063084-57063025	hs|18q21.32	Agilent_HUMAN_G3V2	TCONS_00026535	TCONS_00026535	chr18	 57063025	 57063084	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25864_PI429285431	0.879309	A	0.88472396	A	0.996253670810302	0	lncRNA	27385-1_{1..476}	lnc-PTPN14-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPN14-3:1	chr1	214159412	214159887	-	lnc-PTPN14-3	lnc-PTPN14-3:1	ENSG00000230461.2	PROX1-AS1	PROX1	NA	chr1:214161860-214169496	inter
CUST_21016_PI429285431	7.4836216	P	7.6981845	P	0.861807225889461	0	lncRNA	22645-1_{1..482}	lnc-SRCIN1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRCIN1-1:2	chr17	 36608562	 36609043	-	lnc-SRCIN1-1	lnc-SRCIN1-1:2	ENSG00000260833.2	AC124789.1	ARHGAP23	NA	chr17:36598562-36618688	inner
CUST_6922_PI429285431	0.8978982	A	1.2648671	A	0.775409921583389	0	lncRNA	6874-1_{1..546}	"transcript_id ""ENST00000414401.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414401.1"" | genecode_v17"	chr22	 17518102	 17518647	+	ENSG00000237438.1	ENST00000414401.1	CECR7	CECR7-002	NA	NA	NA	inter
CUST_1016_PI429285431	0.88985026	A	1.1639504	A	0.826965965289058	0	lncRNA	1005-1_{1..670}	"transcript_id ""ENST00000594764.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594764.1"" | genecode_v17"	chr2	108442197	108442866	-	ENSG00000230651.2	ENST00000594764.1	AC096655.2	AC096655.2-004	RGPD4	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10chr2:108443388-108453292"	NA	inter
CUST_17031_PI429285431	1.4001305	A	1.0895241	A	1.24022888892305	0	lncRNA	18742-1_{1..251}	lnc-FAM110B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM110B-4:1	chr8	 58405427	 58405677	+	lnc-FAM110B-4	lnc-FAM110B-4:1	XLOC_006808	linc-FAM110B-2	NA	NA	NA	inter
LNCA_21_P0002932	12.672848	P	12.715722	P	0.970719245332301	0	lncRNA	TCONS_00005950	NA	NA	NA	NA	XLOC_002580	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002580), lincRNA [TCONS_00005950]"	chr3:13759172-13759231	hs|3p25.1	Agilent_HUMAN_G3V2	TCONS_00005950	TCONS_00005950	chr3	 13759172	 13759231	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33530_PI429285431	5.723598	P	5.8433475	P	0.92034743977848	0	lncRNA	35098-1_{1..2356}	n340270|AK057697|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2731|NULL|-1.2221700|-0.3634950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340270|AK057697|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2731|NULL|-1.2221700|-0.3634950	chr4	169763542	169765897	+	NA	NA	NA	NA	PALLD	NA	chr4:169753542-169775898	inner
CUST_15081_PI429285431	5.998556	P	5.4317255	P	1.48126575618312	0	lncRNA	16744-2_{3001..3697}	lnc-LTBP3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LTBP3-2:2	chr11	 65281484	 65282180	-	lnc-LTBP3-2	lnc-LTBP3-2:2	XLOC_009474	linc-SLC25A45-5	NA	NA	NA	inter
CUST_50990_PI429285431	5.525395	P	5.7354717	P	0.864491269936177	0	lncRNA	54634-1_{1..731}	hg19_lincRNAsTranscripts_TCONS_l2_00005953 range=chr12:122502268-122506459 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005953 range=chr12:122502268-122506459 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	122502268	122502998	+	NA	NA	NA	NA	BCL7A	NA	chr12:122492268-122499950	inter
LNCA_21_P0011100	0.88516605	A	1.0793484	A	0.874068135246692	0	lncRNA	TCONS_l2_00006305	NA	NA	NA	NA	XLOC_l2_003414	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003414), lincRNA [TCONS_l2_00006305]"	chr12:68100705-68100646	hs|12q15	Agilent_HUMAN_G3V2	TCONS_l2_00006305	TCONS_l2_00006305	chr12	 68100646	 68100705	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7282_PI429285431	0.90415037	A	0.9107549	A	0.995432551315928	0	lncRNA	8172-1_{1..192}	"transcript_id ""ENST00000408104.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000408104.1"" | genecode_v17"	chr11	  5245678	  5245869	-	ENSG00000221031.1	ENST00000408104.1	CoTC_ribozyme	CoTC_ribozyme.1-201	HBD	NA	chr11:5254059-5255858	inter
CUST_32910_PI429285431	1.2206451	A	0.9114226	A	1.23903977426519	0	lncRNA	34535-1_{1..2200}	n339582|AK023590|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2026|NULL|-1.1053600|-0.3562524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339582|AK023590|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2026|NULL|-1.1053600|-0.3562524	chr20	 13093136	 13095335	+	NA	NA	NA	NA	SPTLC3	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80chr20:13083136-13105336"	NA	inner
CUST_26568_PI429285431	5.864199	P	6.696498	P	0.561633540336279	0	lncRNA	28072-1_{1..439}	lnc-NRIP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NRIP2-1:2	chr12	  2921728	  2922166	-	lnc-NRIP2-1	lnc-NRIP2-1:2	ENSG00000258325.1	RP4-816N1.6	ITFG2	"hg19_refFlat_ITFG2:range=chr12:2921927-29333595'pad=0,hg19_refFlat_ITFG2:range=chr12:2921927-29333595'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.90chr12:2921787-2931982"	NA	inner
LNCA_19_P00317444	6.826008	P	6.906844	P	0.945509592520465	0	lncRNA	XR_108709	XR_108709	XR_108709	NA	Hs.583071	LOC389602	uncharacterized LOC389602	ENST00000377722	THC2480651	NA	"PREDICTED: Homo sapiens hypothetical LOC389602 (LOC389602), miscRNA [XR_108709]"	chr7:155758582-155758641	hs|7q36.3	Agilent_HUMAN_G3V2	XR_108709	XR_108709	chr7	155758582	155758641	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31906_PI429285431	5.4517603	P	5.6593475	P	0.865984315166815	0	lncRNA	33637-1_{1..783}	n338461|CR611440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|858|NULL|0.2527170|-0.1577889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338461|CR611440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|858|NULL|0.2527170|-0.1577889	chr14	 95625022	 95625804	+	NA	NA	NA	NA	CLMN	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60chr14:95648276-95656268"	NA	inter
CUST_7884_PI429285431	0.9133936	A	0.9203602	A	0.995182761144765	0	lncRNA	9502-2_{3001..6000}	lnc-FH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FH-1:1	chr1	241509602	241512601	-	lnc-FH-1	lnc-FH-1:1	ENSG00000248169	ENST00000515837	RGS7	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr1:241496602-241520478"	NA	inner
CUST_44609_PI429285431	0.8843398	A	1.0510175	A	0.89089190481898	0	lncRNA	49183-1_{1..3000}	"gi|28476830|ref|NR_001281.1| Homo sapiens protocadherin beta 18 pseudogene (PCDHB18), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|28476830|ref|NR_001281.1| Homo sapiens protocadherin beta 18 pseudogene (PCDHB18), non-coding RNA"	NA	NA	NA	NA	NA	NR_001281.1	NA	NA	NA	NA	NA	Unknown
CUST_43899_PI429285431	10.126953	P	10.219202	P	0.938059279455104	0	lncRNA	48613-1_{1..2223}	"gi|214010245|ref|NR_024521.1| Homo sapiens lectin, mannose-binding 2-like (LMAN2L), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|214010245|ref|NR_024521.1| Homo sapiens lectin, mannose-binding 2-like (LMAN2L), transcript variant 6, non-coding RNA"	Chr2	 97371666	 97373888	-	81562	NR_024521.1	NA	NA	NA	NA	NA	inter
CUST_20926_PI429285431	4.1053576	P	4.3582263	P	0.839226011779047	0	lncRNA	22557-1_{1..367}	lnc-HDDC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HDDC3-1:1	chr15	 91478215	 91478581	-	lnc-HDDC3-1	lnc-HDDC3-1:1	ENSG00000224441.1	AC068831.3	UNC45A	NA	chr15:91473410-91488360	inner
CUST_29611_PI429285431	4.761865	P	5.0253606	P	0.833066979712293	0	lncRNA	31372-1_{1..332}	n333148|AF369213|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078519|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078519|2.0329800|-0.0840649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333148|AF369213|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078519|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078519|2.0329800|-0.0840649	chr4	  1803189	  1803520	+	NA	NA	NA	NA	LETM1	NA	chr4:1813206-1815466	inner
LNCA_21_P0002076	0.88177925	A	0.957937	A	0.948580587904387	0	lncRNA	ENST00000414965	NA	NA	NA	NA	XLOC_002223	NA	ENST00000414965	NA	NA	"BROAD Institute lincRNA (XLOC_002223), lincRNA [TCONS_00003340]"	chr2:101286458-101286399	hs|2q11.2	Agilent_HUMAN_G3V2	ENST00000414965	ENST00000414965	chr2	101286399	101286458	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19602_PI429285431	0.9117552	A	0.912079	A	0.999775584127945	0	lncRNA	21258-1_{1..213}	lnc-CTH-6:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTH-6:5	chr1	 71873304	 71873516	+	lnc-CTH-6	lnc-CTH-6:5	ENSG00000227126.1	NEGR1-AS1	NEGR1	NA	chr1:71868625-71883407	inner
CUST_18976_PI429285431	1.1069133	A	0.9288762	A	1.13134355583163	0	lncRNA	20668-1_{1..690}	lnc-WFIKKN2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WFIKKN2-1:4	chr17	 48986933	 48987622	+	lnc-WFIKKN2-1	lnc-WFIKKN2-1:4	ENSG00000229980	AC091062.2	NA	NA	NA	inter
CUST_2459_PI429285431	2.0181143	A	2.835495	A	0.567471286348645	0	lncRNA	2451-1_{1..2536}	"transcript_id ""ENST00000569502.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569502.1"" | genecode_v17"	chr6	   905462	   907997	-	ENSG00000260982.1	ENST00000569502.1	RP5-1077H22.2	RP5-1077H22.2-001	NA	NA	NA	inter
CUST_32321_PI429285431	0.88821536	A	0.9018729	A	0.990577982657554	0	lncRNA	34004-1_{1..3000}	n338900|BC041870|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1326|NULL|-0.4746090|-0.4221405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338900|BC041870|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1326|NULL|-0.4746090|-0.4221405	chr2	 86664162	 86667161	-	NA	NA	NA	NA	KDM3A	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50chr2:86668271-86677836"	NA	inter
LNCA_21_P0007451	0.9060829	A	0.9672204	A	0.958508080903103	0	lncRNA	TCONS_00020005	NA	NA	NA	NA	XLOC_009301	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009301), lincRNA [TCONS_00020005]"	chr11:119776369-119776428	hs|11q23.3	Agilent_HUMAN_G3V2	TCONS_00020005	TCONS_00020005	chr11	119776369	119776428	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51929_PI429285431	4.5493784	P	4.7623353	P	0.862767119017741	0	lncRNA	55470-1_{1..1585}	hg19_lincRNAsTranscripts_TCONS_l2_00016457 range=chr20:5409152-5426901 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016457 range=chr20:5409152-5426901 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	  5409152	  5410736	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35434_PI429285431	6.6830244	P	7.209755	P	0.694125964220617	0	lncRNA	36840-1_{1..737}	n342495|L08436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4989|NULL|-0.9426230|-0.2239858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342495|L08436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4989|NULL|-0.9426230|-0.2239858	chr16	 84599237	 84599973	+	NA	NA	NA	NA	COTL1	NA	chr16:84599202-84609842	inner
CUST_25454_PI429285431	8.135813	P	8.554843	P	0.747927326307965	0	lncRNA	26984-1_{1..364}	lnc-CDYL2-6:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDYL2-6:6	chr16	 80574747	 80575110	-	lnc-CDYL2-6	lnc-CDYL2-6:6	ENSG00000259867.1	RP11-525K10.3	DYNLRB2	NA	chr16:80574854-80584541	inter
CUST_17221_PI429285431	5.588772	P	6.320863	P	0.602030715491785	0	lncRNA	18935-1_{1..205}	lnc-KCNH8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNH8-2:1	chr3	 18628362	 18628566	+	lnc-KCNH8-2	lnc-KCNH8-2:1	XLOC_002592	linc-KCNH8-2	NA	NA	NA	inter
CUST_29013_PI429285431	1.2166221	A	0.8921622	A	1.25219556792194	0	lncRNA	30738-1_{1..418}	n326498|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099059|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099059|-1.0128700|-0.2906632	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326498|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099059|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099059|-1.0128700|-0.2906632	chr1	103590356	103590773	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13890_PI429285431	7.108226	P	7.0452437	P	1.04462294661474	0	lncRNA	15534-1_{1..1002}	lnc-FOXN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXN2-1:1	chr2	 48392146	 48393147	+	lnc-FOXN2-1	lnc-FOXN2-1:1	XLOC_001465	linc-FOXN2-1	NA	NA	NA	inter
CUST_44130_PI429285431	0.9096749	A	0.9092414	A	1.0003005244512	0	lncRNA	48793-1_{1..1617}	"gi|237858683|ref|NR_027694.1| Homo sapiens protein phosphatase 2C-like domain containing 1 (PP2D1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237858683|ref|NR_027694.1| Homo sapiens protein phosphatase 2C-like domain containing 1 (PP2D1), transcript variant 2, non-coding RNA"	Chr3	 20021453	 20023069	-	151649	NR_027694.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008037	0.89900136	A	0.91265094	A	0.990583448138665	0	lncRNA	TCONS_00021730	NA	NA	NA	NA	XLOC_010311	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010311), lincRNA [TCONS_00021730]"	chr13:24079690-24079749	hs|13q12.12	Agilent_HUMAN_G3V2	TCONS_00021730	TCONS_00021730	chr13	 24079690	 24079749	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46221_PI429285431	3.339718	P	3.7234216	P	0.766467433762148	0	lncRNA	50461-1_{1..1599}	"gi|54400739|ref|NR_002183.1| Homo sapiens suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 4 (ST13P4), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|54400739|ref|NR_002183.1| Homo sapiens suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 4 (ST13P4), non-coding RNA"	Chr13	 50746154	 50747752	+	145165	NR_002183.1	NA	NA	NA	NA	NA	inter
CUST_17621_PI429285431	5.5413103	P	5.6913867	P	0.901202736854346	0	lncRNA	19346-1_{1..375}	lnc-PTEN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTEN-1:1	chr10	 89740504	 89740878	+	lnc-PTEN-1	lnc-PTEN-1:1	XLOC_008547	linc-LIPJ-2	NA	NA	NA	inter
CUST_40192_PI429285431	0.8901374	A	0.89884484	A	0.99398263978223	0	lncRNA	41025-2_{3001..4243}	n407992|NR_027712|lncRNA|Homosapiens||RefGeneNoncode|NR_027712||6.0271400|-0.1853573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407992|NR_027712|lncRNA|Homosapiens||RefGeneNoncode|NR_027712||6.0271400|-0.1853573	chr6	  7989334	  7990576	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27408_PI429285431	1.0277653	A	1.3301806	A	0.810893694854076	0	lncRNA	28972-1_{1..1016}	n324573|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039975|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039975|-1.2450900|-0.3932370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324573|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039975|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039975|-1.2450900|-0.3932370	chr6	 19911580	 19912595	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42363_PI429285431	7.972968	P	7.924803	P	1.03394898149155	0	lncRNA	45036-1_{1..136}	ENST00000384231 ncrna:snoRNA chromosome:GRCh37:5:87678589:87678724:1 gene:ENSG00000206958 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384231 ncrna:snoRNA chromosome:GRCh37:5:87678589:87678724:1 gene:ENSG00000206958 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	 87678589	 87678724	+	ENSG00000206958	ENST00000384231	NA	NA	NA	NA	NA	inter
LNCA_33_P3337019	5.2375116	P	5.720414	P	0.715536665262981	0	lncRNA	XR_110914	XR_110914	XR_110914	   728975	Hs.647238	LOC728975	uncharacterized LOC728975	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC728975 (LOC728975), miscRNA [XR_110914]"	chr11:64947580-64947521	hs|11q13.1	Agilent_HUMAN_G3V2	XR_110914	XR_110914	chr11	 64947521	 64947580	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_176_PI429201921	8.543802	P	8.775784	P	0.851464331104481	0	lncRNA	147-1_{1..3000}	TC03002976.hg.1	TCONS_l2_00019359-XLOC_l2_010246 // Broad TUCP // linc-CNTN3-4 chr3:-:75668378-75672924 // chr3 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr3:-:75668378-75672924	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00019359-XLOC_l2_010246	linc-CNTN3-4	chr3	 75668378	 75672924	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38821_PI429285431	0.8868056	A	0.894753	A	0.994506427260778	0	lncRNA	39815-1_{1..1807}	n384608|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jgb.2||2.2693300|-0.3432152	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n384608|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jgb.2||2.2693300|-0.3432152	chr5	 17811560	 17813366	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31782_PI429285431	0.90019786	A	0.90105605	A	0.999405324910478	0	lncRNA	33522-1_{1..781}	n338324|BC011648|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|718|NULL|-0.8932270|-0.1782623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338324|BC011648|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|718|NULL|-0.8932270|-0.1782623	chr19	 14444554	 14445334	+	NA	NA	NA	NA	NA	"hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
LNCA_21_P0011261	0.8877121	A	0.89624983	A	0.994099572821559	0	lncRNA	TCONS_l2_00007938	NA	NA	NA	NA	XLOC_l2_004327	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004327), lincRNA [TCONS_l2_00007938]"	chr14:104992991-104993050	hs|14q32.33	Agilent_HUMAN_G3V2	TCONS_l2_00007938	TCONS_l2_00007938	chr14	104992991	104993050	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2216_PI429285431	3.1267822	P	4.203429	P	0.474129544554561	0	lncRNA	2208-1_{1..745}	"transcript_id ""ENST00000504916.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504916.1"" | genecode_v17"	chr5	 82215195	 82215939	-	ENSG00000248112.1	ENST00000504916.1	RP11-78C3.1	RP11-78C3.1-001	NA	NA	NA	inter
CUST_14053_PI429285431	1.1689285	A	1.9861097	A	0.567549763328405	0	lncRNA	15699-1_{1..352}	lnc-C12orf48-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C12orf48-3:1	chr12	102356030	102356381	+	lnc-C12orf48-3	lnc-C12orf48-3:1	XLOC_009852	linc-C12orf48-2	NA	NA	NA	inter
LNCA_21_P0005044	3.6360984	P	4.2422633	P	0.656940720978478	0	lncRNA	TCONS_00012231	NA	NA	NA	NA	XLOC_005788	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005788), lincRNA [TCONS_00012231]"	chr6:96461513-96461454	hs|6q16.1	Agilent_HUMAN_G3V2	TCONS_00012231	TCONS_00012231	chr6	 96461454	 96461513	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43537_PI429285431	0.92688525	A	1.5148176	A	0.665295716460987	0	lncRNA	48320-1_{1..546}	"gi|301129194|ref|NR_034168.1| Homo sapiens spermatogenesis-related protein 7 (SRG7), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|301129194|ref|NR_034168.1| Homo sapiens spermatogenesis-related protein 7 (SRG7), transcript variant 1, non-coding RNA"	Chr1	109399839	109400384	+	642864	NR_034168.1	NA	NA	NA	NA	NA	inter
CUST_16183_PI429285431	0.89424545	A	0.90947247	A	0.98950093800507	0	lncRNA	17888-1_{1..282}	lnc-PRKD1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRKD1-4:2	chr14	 29532236	 29532517	-	lnc-PRKD1-4	lnc-PRKD1-4:2	XLOC_010985	linc-NOVA1-7	NA	NA	NA	inter
CUST_41766_PI429285431	7.3397512	P	7.392344	P	0.964201914876936	0	lncRNA	43328-1_{1..88}	ENST00000577299 ncrna:miRNA chromosome:GRCh37:2:32313373:32313460:-1 gene:ENSG00000263802 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577299 ncrna:miRNA chromosome:GRCh37:2:32313373:32313460:-1 gene:ENSG00000263802 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 32313373	 32313460	-	ENSG00000263802	ENST00000577299	NA	NA	SPAST	NA	chr2:32303373-32323460	inner
CUST_6837_PI429285431	4.6560383	P	5.0676646	P	0.75177544553246	0	lncRNA	6785-1_{1..1122}	"transcript_id ""ENST00000458316.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458316.1"" | genecode_v17"	chr21	 29420766	 29421887	+	ENSG00000232079.1	ENST00000458316.1	AL035610.1	AL035610.1-004	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60"	NA	inter
CUST_36611_PI429285431	0.88117045	A	1.2612092	A	0.768416951107652	0	lncRNA	37804-1_{1..525}	n345107|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_656|NULL|-1.7800800|-0.3298160	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345107|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_656|NULL|-1.7800800|-0.3298160	chr10	  7487521	  7488045	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3645_PI429285431	0.8816687	A	1.2627248	A	0.76787527501285	0	lncRNA	3614-1_{1..408}	"transcript_id ""ENST00000416310.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416310.1"" | genecode_v17"	chr10	 31012180	 31012587	+	ENSG00000230720.1	ENST00000416310.1	RP11-14C22.6	RP11-14C22.6-001	NA	NA	NA	inter
LNCA_21_P0014364	0.880841	A	0.8835123	A	0.998150109097845	0	lncRNA	XR_109464	XR_109464	XR_109464	NA	NA	MGC11082	uncharacterized LOC84777	NA	THC2581701	NA	"PREDICTED: Homo sapiens hypothetical LOC84777 (MGC11082), miscRNA [XR_109464]"	chr18:3604366-3604425	hs|18p11.31	Agilent_HUMAN_G3V2	XR_109464	XR_109464	chr18	  3604366	  3604425	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002504	0.88070416	A	1.5308942	A	0.637196372999159	0	lncRNA	TCONS_00004444	NA	NA	NA	NA	XLOC_002318	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002318), lincRNA [TCONS_00004444]"	chr2:130343809-130343750	hs|2q21.1	Agilent_HUMAN_G3V2	TCONS_00004444	TCONS_00004444	chr2	130343750	130343809	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43782_PI429285431	0.88042796	A	1.669735	A	0.578621950803909	0	lncRNA	48513-1_{1..676}	"gi|310118868|ref|XR_109909.1| PREDICTED: Homo sapiens uncharacterized LOC100506014, transcript variant 3 (LOC100506014), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118868|ref|XR_109909.1| PREDICTED: Homo sapiens uncharacterized LOC100506014, transcript variant 3 (LOC100506014), misc_RNA"	NA	NA	NA	NA	NA	XR_109909.1	NA	NA	NA	NA	NA	Unknown
CUST_17235_PI429285431	0.90256363	A	0.9102084	A	0.994715063902827	0	lncRNA	18953-1_{1..470}	lnc-AC009336.1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC009336.1-4:2	chr2	177392419	177392888	-	lnc-AC009336.1-4	lnc-AC009336.1-4:2	XLOC_002407	linc-EVX2-3	NA	NA	NA	inter
CUST_5780_PI429285431	0.9512491	A	1.34425	A	0.761543894775679	0	lncRNA	5702-1_{1..461}	"transcript_id ""ENST00000580507.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580507.1"" | genecode_v17"	chr17	 21760934	 21761394	-	ENSG00000263609.1	ENST00000580507.1	RP11-1109M24.16	RP11-1109M24.16-003	NA	NA	NA	inter
CUST_50240_PI429285431	1.5609202	A	2.5676873	A	0.497660193690582	0	lncRNA	53964-1_{1..424}	hg19_lincRNAsTranscripts_TCONS_l2_00029338 range=chr9:67332437-67340186 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029338 range=chr9:67332437-67340186 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 67332437	 67332860	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33165_PI429285431	1.0356882	A	1.1699694	A	0.91112367349185	0	lncRNA	34759-1_{1..2056}	n339856|AK025887|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2304|NULL|-0.9104450|-0.2699400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339856|AK025887|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2304|NULL|-0.9104450|-0.2699400	chr4	  9870400	  9872455	-	NA	NA	NA	NA	SLC2A9	NA	chr4:9860400-9884487	inner
CUST_47569_PI429285431	0.8867956	A	0.8965821	A	0.993239471014703	0	lncRNA	51574-1_{1..1931}	"gi|387157916|ref|NR_046639.1| Homo sapiens PHEX antisense RNA 1 (PHEX-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|387157916|ref|NR_046639.1| Homo sapiens PHEX antisense RNA 1 (PHEX-AS1), non-coding RNA"	ChrX	 22180849	 22182779	-	100873942	NR_046639.1	NA	NA	NA	NA	NA	inter
CUST_5163_PI429285431	5.532383	P	5.4948215	P	1.02637753594563	0	lncRNA	5103-1_{1..500}	"transcript_id ""ENST00000559356.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559356.1"" | genecode_v17"	chr15	 44827267	 44827766	-	ENSG00000179523.4	ENST00000559356.1	RP11-151N17.2	RP11-151N17.2-003	EIF3J	"hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50chr15:44829266-44839092"	NA	inter
CUST_1146_PI429285431	1.9210619	A	1.2389269	A	1.60451246772501	0	lncRNA	1135-1_{1..545}	"transcript_id ""ENST00000447019.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447019.1"" | genecode_v17"	chr2	158582220	158582764	-	ENSG00000234584.1	ENST00000447019.1	AC019186.1	AC019186.1-001	ACVR1	NA	chr2:158592958-158602517	inter
LNCA_21_P0013120	0.8818983	A	0.8822738	A	0.999739757102759	0	lncRNA	XR_108703	XR_108703	XR_108703	NA	Hs.665936	LOC100507506	uncharacterized LOC100507506	NA	THC2624059	NA	"PREDICTED: Homo sapiens hypothetical LOC100507506 (LOC100507506), miscRNA [XR_108703]"	chr6:4157015-4157074	hs|6p25.2	Agilent_HUMAN_G3V2	XR_108703	XR_108703	chr6	  4157015	  4157074	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42768_PI429285431	8.855641	P	7.5401	P	2.48895647194108	0	lncRNA	45745-1_{1..126}	ENST00000517079 ncrna:snoRNA chromosome:GRCh37:10:78595135:78595260:-1 gene:ENSG00000252888 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517079 ncrna:snoRNA chromosome:GRCh37:10:78595135:78595260:-1 gene:ENSG00000252888 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	 78595135	 78595260	-	ENSG00000252888	ENST00000517079	NA	NA	KCNMA1	NA	chr10:78596104-78605260	inter
LNCA_21_P0005839	0.8827792	A	0.8830533	A	0.999810026405078	0	lncRNA	TCONS_00015018	NA	NA	NA	NA	XLOC_007092	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007092), lincRNA [TCONS_00015018]"	chr8:61237709-61235207	hs|8q12.1	Agilent_HUMAN_G3V2	TCONS_00015018	TCONS_00015018	chr8	 61235207	 61237709	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5427_PI429285431	4.4809046	P	4.5751534	P	0.936759883998515	0	lncRNA	5361-1_{1..791}	"transcript_id ""ENST00000571158.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000571158.1"" | genecode_v17"	chr16	 11913699	 11914489	-	ENSG00000262117.1	ENST00000571158.1	BCAR4	BCAR4-003	RSL1D1	NA	chr16:11928053-11932702	inter
CUST_30187_PI429285431	0.8877073	A	0.896913	A	0.993639409742449	0	lncRNA	31961-1_{1..215}	n334888|AJ459835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248092_09|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248092_09|-1.4431400|-0.3800649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334888|AJ459835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248092_09|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248092_09|-1.4431400|-0.3800649	chr6	   729313	   729527	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32373_PI429285431	4.10919	P	2.2244875	A	3.69276767402647	0	lncRNA	34050-1_{1..3000}	n338963|BX647087|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1391|NULL|-0.9882850|-0.2618420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338963|BX647087|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1391|NULL|-0.9882850|-0.2618420	chr2	135206959	135209958	+	NA	NA	NA	NA	TMEM163	NA	chr2:135213330-135222192	inner
CUST_50669_PI429285431	4.9828086	P	5.104619	P	0.919033655594234	0	lncRNA	54344-1_{1..879}	hg19_lincRNAsTranscripts_TCONS_l2_00003508 range=chr10:43046005-43048019 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003508 range=chr10:43046005-43048019 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 43046005	 43046883	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2271_PI429285431	0.88901526	A	1.1087489	A	0.8587239651603	0	lncRNA	2263-1_{1..724}	"transcript_id ""ENST00000504012.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504012.1"" | genecode_v17"	chr5	 96840400	 96841123	+	ENSG00000250331.1	ENST00000504012.1	RP11-1E3.1	RP11-1E3.1-001	NA	NA	NA	inter
LNCA_21_P0007040	1.4294267	A	0.88629985	A	1.45712722722607	0	lncRNA	TCONS_00018657	NA	NA	NA	NA	XLOC_009007	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009007), lincRNA [TCONS_00018657]"	chr10:134825358-134825299	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_00018657	TCONS_00018657	chr10	134825299	134825358	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18010_PI429285431	0.8830656	A	0.88274217	A	1.00022420972385	0	lncRNA	19743-1_{1..444}	lnc-UBE2E3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBE2E3-2:1	chr2	181589323	181589766	+	lnc-UBE2E3-2	lnc-UBE2E3-2:1	XLOC_001773	linc-UBE2E3-2	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60"	NA	inter
CUST_14299_PI429285431	5.596126	P	5.9032755	P	0.808237110488376	0	lncRNA	15959-1_{1..399}	lnc-MTR-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTR-1:3	chr1	237080041	237080439	+	lnc-MTR-1	lnc-MTR-1:3	XLOC_000633	linc-RYR2-2	NA	NA	NA	inter
CUST_50286_PI429285431	0.88422656	A	0.9287247	A	0.969627055500461	0	lncRNA	54007-5_{12001..15000}	hg19_lincRNAsTranscripts_TCONS_l2_00028843 range=chr9:76064311-76092053 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028843 range=chr9:76064311-76092053 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 76076311	 76079310	+	NA	NA	NA	NA	NA	"hg19_refFlat_DPP3:range=chr11:66249672-662767225'pad=0,hg19_refFlat_DPP3:range=chr11:66249672-662767225'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60"	NA	inter
CUST_7354_PI429285431	3.5690246	P	1.2579669	A	4.96246765876361	0	lncRNA	9000-1_{1..748}	lnc-WDR74-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR74-1:10	chr11	 62622896	 62623643	-	lnc-WDR74-1	lnc-WDR74-1:10	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62632960	inter
CUST_22050_PI429285431	3.6310816	P	4.2006946	P	0.673797508999285	0	lncRNA	23658-1_{1..657}	lnc-CBLL1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CBLL1-1:2	chr7	107384504	107385160	+	lnc-CBLL1-1	lnc-CBLL1-1:2	ENSG00000241764.1	AC002467.7	CBLL1	NA	chr7:107384279-107394573	inter
LNCA_21_P0004135	0.8864977	A	0.88781554	A	0.999086959994487	0	lncRNA	TCONS_00009685	NA	NA	NA	NA	XLOC_004858	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004858), lincRNA [TCONS_00009685]"	chr5:67735058-67734999	hs|5q13.1	Agilent_HUMAN_G3V2	TCONS_00009685	TCONS_00009685	chr5	 67734999	 67735058	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28028_PI429285431	0.91123974	A	0.91079336	A	1.00030945490975	0	lncRNA	29643-1_{1..404}	n325290|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327291|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327291|-1.0379100|-0.2164058	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325290|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327291|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327291|-1.0379100|-0.2164058	chr2	 64418704	 64419107	-	NA	NA	NA	NA	NA	"hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90"	NA	inter
CUST_31200_PI429285431	12.106666	P	11.898622	P	1.15512101344681	0	lncRNA	32994-1_{1..921}	n337644|CR606168|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|23|NULL|-0.5201380|-0.0592864	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337644|CR606168|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|23|NULL|-0.5201380|-0.0592864	chr1	  1822909	  1823829	+	NA	NA	NA	NA	GNB1	NA	chr1:1812909-1822526	inter
CUST_25993_PI429285431	2.1790376	A	2.3421807	A	0.893077264195692	0	lncRNA	27512-1_{1..491}	lnc-ITGB3BP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITGB3BP-1:1	chr1	 63790026	 63790516	-	lnc-ITGB3BP-1	lnc-ITGB3BP-1:1	ENSG00000230798.1	RP4-792G4.2	FOXD3	"hg19_refFlat_FOXD3:range=chr1:63788730-637901665'pad=0,hg19_refFlat_FOXD3:range=chr1:63788730-637901665'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30chr1:63788730-63790797"	NA	inner
CUST_34768_PI429285431	0.9115707	A	0.92618847	A	0.989918892416634	0	lncRNA	36208-1_{1..2086}	n341677|AK090837|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4148|NULL|-0.9300780|-0.3247926	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341677|AK090837|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4148|NULL|-0.9300780|-0.3247926	chr9	 34383687	 34385772	+	NA	NA	NA	NA	KIAA1161	NA	chr9:34373687-34376894	inner
CUST_25497_PI429285431	0.8957504	A	0.8948735	A	1.0006080055231	0	lncRNA	27027-1_{1..432}	lnc-AC006035.2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC006035.2-1:2	chr7	 16276934	 16277365	+	lnc-AC006035.2-1	lnc-AC006035.2-1:2	ENSG00000229688.3	AC004741.3	ISPD	NA	chr7:16266934-16287031	inter
CUST_39488_PI429285431	0.87900245	A	0.88148224	A	0.998282616945993	0	lncRNA	40435-1_{1..1025}	n387181|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010zpg.1||1.0583800|-0.2103758	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n387181|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010zpg.1||1.0583800|-0.2103758	chr2	243030843	243031867	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9058_PI429285431	1.5759803	A	1.6442423	A	0.953786322871821	0	lncRNA	10582-1_{1..2426}	lnc-FMNL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FMNL1-2:1	chr17	 43359743	 43362168	+	lnc-FMNL1-2	lnc-FMNL1-2:1	ENSG00000250018	AC003963.1	MAP3K14	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr17:43349743-43370435"	NA	inner
LNCA_21_P0012471	2.486031	A	3.020134	P	0.69058791836782	0	lncRNA	TCONS_l2_00019632	NA	NA	NA	NA	XLOC_l2_010451	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010451), lincRNA [TCONS_l2_00019632]"	chr3:180604521-180604462	hs|3q26.33	Agilent_HUMAN_G3V2	TCONS_l2_00019632	TCONS_l2_00019632	chr3	180604462	180604521	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50840_PI429285431	4.4007683	P	5.4297166	P	0.490067269264434	0	lncRNA	54485-1_{1..1621}	hg19_lincRNAsTranscripts_TCONS_l2_00004588 range=chr11:66176754-66180340 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004588 range=chr11:66176754-66180340 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 66176754	 66178374	+	NA	NA	NA	NA	NPAS4	NA	chr11:66188475-66190340	inter
CUST_11838_PI429285431	2.1877449	A	1.9199123	A	1.20399766985941	0	lncRNA	13416-4_{9001..12000}	lnc-FAM174B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-FAM174B-2:1	chr15	 93123431	 93126430	-	lnc-FAM174B-2	lnc-FAM174B-2:1	XLOC_011584	linc-VPS33B-3	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90"	NA	inter
CUST_13609_PI429285431	0.8901911	A	0.9098995	A	0.986432063688525	0	lncRNA	15248-1_{1..676}	lnc-CDYL2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDYL2-2:3	chr16	 80603122	 80603797	-	lnc-CDYL2-2	lnc-CDYL2-2:3	XLOC_012020	linc-MAF-5	NA	NA	NA	inter
CUST_27266_PI429285431	1.5520091	A	1.9507076	A	0.758542279228807	0	lncRNA	28819-1_{1..375}	n324412|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041900|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041900|-1.0619400|-0.2880435	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324412|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041900|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041900|-1.0619400|-0.2880435	chr6	114219724	114220098	+	NA	NA	NA	NA	HDAC2	NA	chr6:114257320-114275249	inter
CUST_15710_PI429285431	3.8247757	P	4.311844	P	0.71347347483208	0	lncRNA	17398-1_{1..451}	lnc-TMEM206-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM206-4:1	chr1	212687866	212688316	-	lnc-TMEM206-4	lnc-TMEM206-4:1	XLOC_001194	linc-TMEM206-3	NA	NA	NA	inter
CUST_21752_PI429285431	6.1253858	P	6.386009	P	0.834727264966671	0	lncRNA	23362-1_{1..522}	lnc-BANP-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BANP-3:1	chr16	 87871019	 87871540	+	lnc-BANP-3	lnc-BANP-3:1	ENSG00000260466.1	RP4-536B24.2	SLC7A5	"hg19_refFlat_SLC7A5:range=chr16:87866576-879030285'pad=0,hg19_refFlat_SLC7A5:range=chr16:87866576-879030285'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20chr16:87863629-87881269"	NA	inner
CUST_1630_PI429285431	5.1541514	P	5.2013693	P	0.96780084234054	0	lncRNA	1615-1_{1..852}	"transcript_id ""ENST00000600527.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600527.1"" | genecode_v17"	chr3	195404655	195405506	+	ENSG00000242086.3	ENST00000600527.1	AC069513.3	AC069513.3-031	NA	NA	NA	inter
CUST_8735_PI429285431	0.8921186	A	0.9081631	A	0.988940411994484	0	lncRNA	10278-1_{1..1668}	lnc-KDM4C-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KDM4C-8:1	chr9	  8860782	  8862449	+	lnc-KDM4C-8	lnc-KDM4C-8:1	ENSG00000225706	RP11-75C9.1	PTPRD	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30chr9:8850782-8872255"	NA	inner
CUST_12850_PI429285431	0.8913906	A	1.6721777	A	0.58204915445967	0	lncRNA	14476-1_{1..464}	lnc-KCTD6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCTD6-1:2	chr3	 58470299	 58470762	+	lnc-KCTD6-1	lnc-KCTD6-1:2	XLOC_002675	linc-KCTD6	KCTD6	NA	chr3:58477823-58480470	inter
CUST_23048_PI429285431	1.8745189	A	1.8140948	A	1.04277225299998	0	lncRNA	24619-1_{1..474}	lnc-GABARAPL3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GABARAPL3-3:1	chr15	 91139567	 91140040	-	lnc-GABARAPL3-3	lnc-GABARAPL3-3:1	ENSG00000259212.1	CTD-3065B20.2	CRTC3	NA	chr15:91129567-91149679	inner
CUST_41516_PI429285431	4.587934	P	5.072451	P	0.714736316454052	0	lncRNA	42750-1_{1..148}	ENST00000581772 ncrna:miRNA chromosome:GRCh37:9:137741971:137742118:-1 gene:ENSG00000264163 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581772 ncrna:miRNA chromosome:GRCh37:9:137741971:137742118:-1 gene:ENSG00000264163 gene_biotype:miRNA transcript_biotype:miRNA	chr9	137741971	137742118	-	ENSG00000264163	ENST00000581772	NA	NA	COL5A1	NA	chr9:137731971-137736689	inter
CUST_48474_PI429285431	0.904443	A	1.4590611	A	0.68083726080907	0	lncRNA	52326-1_{1..1609}	hg19_lincRNAsTranscripts_TCONS_l2_00000846 range=chr1:224179798-224195317 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000846 range=chr1:224179798-224195317 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	224179798	224181406	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2280_PI429285431	3.6593883	P	3.660295	P	0.999371720901406	0	lncRNA	2272-1_{1..944}	"transcript_id ""ENST00000510145.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510145.1"" | genecode_v17"	chr5	101944860	101945803	-	ENSG00000250682.1	ENST00000510145.1	LINC00491	LINC00491-004	NA	NA	NA	inter
CUST_14248_PI429285431	0.9140849	A	0.91819006	A	0.997158564461565	0	lncRNA	15906-2_{3001..3314}	lnc-EXOSC8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-EXOSC8-2:1	chr13	 38125638	 38125951	+	lnc-EXOSC8-2	lnc-EXOSC8-2:1	XLOC_010349	linc-UFM1-3	NA	NA	NA	inter
CUST_15203_PI429285431	1.3734106	A	1.1597478	A	1.15962858373295	0	lncRNA	16871-1_{1..1100}	lnc-MTRNR2L5-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTRNR2L5-3:2	chr10	 58072827	 58073926	+	lnc-MTRNR2L5-3	lnc-MTRNR2L5-3:2	XLOC_008486	linc-CISD1	NA	NA	NA	inter
CUST_32348_PI429285431	0.90544593	A	1.9913676	A	0.471091213787428	0	lncRNA	34028-1_{1..895}	n338930|CR616942|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1356|NULL|-1.2651700|-0.4450801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338930|CR616942|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1356|NULL|-1.2651700|-0.4450801	chr2	105323069	105323963	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010903	0.904726	A	0.9221739	A	0.987978875345905	0	lncRNA	TCONS_l2_00003766	NA	NA	NA	NA	XLOC_l2_002110	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002110), lincRNA [TCONS_l2_00003766]"	chr10:114070815-114070756	hs|10q25.2	Agilent_HUMAN_G3V2	TCONS_l2_00003766	TCONS_l2_00003766	chr10	114070756	114070815	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46574_PI429285431	2.4318466	A	2.888429	A	0.728710457687074	0	lncRNA	50758-1_{1..1769}	"gi|301601675|ref|NR_036442.1| Homo sapiens lipase maturation factor 1 (LMF1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|301601675|ref|NR_036442.1| Homo sapiens lipase maturation factor 1 (LMF1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_036442.1	NA	NA	NA	NA	NA	Unknown
CUST_9514_PI429285431	8.223985	P	8.755429	P	0.69186189967413	0	lncRNA	11023-1_{1..585}	lnc-USP16-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP16-7:1	chr21	 29047027	 29047611	+	lnc-USP16-7	lnc-USP16-7:1	XLOC_013896	linc-USP16-9	NA	NA	NA	inter
LNCA_21_P0005174	0.9023895	A	0.91815543	A	0.989131384945504	0	lncRNA	THC2745380	NA	NA	NA	NA	XLOC_005807	NA	NA	THC2745380	NA	"BROAD Institute lincRNA (XLOC_005807), lincRNA [TCONS_00012771]"	chr6:112713885-112713826	hs|6q21	Agilent_HUMAN_G3V2	THC2745380	THC2745380	chr6	112713826	112713885	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003831	5.075563	P	5.472421	P	0.759510597501727	0	lncRNA	XR_108545	XR_108545	XR_108545	NA	Hs.156197	LOC100506827	uncharacterized LOC100506827	NA	THC2605456	NA	"PREDICTED: Homo sapiens hypothetical LOC100506827 (LOC100506827), miscRNA [XR_108545]"	chr4:44023387-44023446	hs|4p13	Agilent_HUMAN_G3V2	XR_108545	XR_108545	chr4	 44023387	 44023446	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44334_PI429285431	0.894753	A	0.9006884	A	0.995894345563797	0	lncRNA	48963-1_{1..545}	"gi|298566304|ref|NR_033768.1| Homo sapiens transmembrane emp24 protein transport domain containing 11, pseudogene (TMED11P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298566304|ref|NR_033768.1| Homo sapiens transmembrane emp24 protein transport domain containing 11, pseudogene (TMED11P), non-coding RNA"	Chr4	  1108985	  1109529	-	100379220	NR_033768.1	NA	NA	NA	NA	NA	inter
CUST_14895_PI429285431	0.9009164	A	0.89530283	A	1.00389861010446	0	lncRNA	16559-1_{1..1354}	lnc-MRPS27-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPS27-1:1	chr5	 71394585	 71395938	-	lnc-MRPS27-1	lnc-MRPS27-1:1	XLOC_004872	linc-GTF2H2-4	MAP1B	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00chr5:71403118-71405047"	NA	inter
CUST_12331_PI429285431	0.90495855	A	0.9902663	A	0.942583446298506	0	lncRNA	13943-1_{1..413}	lnc-ITIH2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITIH2-6:1	chr10	  7118195	  7118607	+	lnc-ITIH2-6	lnc-ITIH2-6:1	XLOC_008375	linc-ITIH2-5	NA	NA	NA	inter
LNCA_21_P0014717	7.054362	P	7.250796	P	0.872705019389291	0	lncRNA	XR_112611	XR_112611	XR_112611	NA	NA	LOC100508202	uncharacterized LOC100508202	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100508202 (LOC100508202), miscRNA [XR_112611]"	chr4:5813335-5813276	hs|4p16.2	Agilent_HUMAN_G3V2	XR_112611	XR_112611	chr4	  5813276	  5813335	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2100_PI429285431	0.91223454	A	1.3796699	A	0.723249156147014	0	lncRNA	2091-1_{1..459}	"transcript_id ""ENST00000510648.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510648.1"" | genecode_v17"	chr5	 17919337	 17919795	+	ENSG00000249937.1	ENST00000510648.1	RP11-454P21.1	RP11-454P21.1-004	NA	NA	NA	inter
CUST_3310_PI429285431	2.4167948	P	2.4376304	A	0.985661650032825	0	lncRNA	3289-1_{1..281}	"transcript_id ""ENST00000519048.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519048.1"" | genecode_v17"	chr8	130428195	130428475	+	ENSG00000253926.1	ENST00000519048.1	RP11-26E5.1	RP11-26E5.1-001	NA	NA	NA	inter
CUST_27087_PI429285431	0.89078534	A	0.9784061	A	0.941073454168983	0	lncRNA	28619-1_{1..692}	n324197|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141439|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141439|-1.0496000|-0.4284255	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324197|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141439|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141439|-1.0496000|-0.4284255	chr7	115990883	115991574	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39138_PI429285431	5.8309608	P	5.9030085	P	0.951286823300953	0	lncRNA	40114-1_{1..1961}	n385756|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dgk.1||-1.1882400|-0.2703168	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n385756|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dgk.1||-1.1882400|-0.2703168	chrX	 45707326	 45709286	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003062	0.8906511	A	1.0683134	A	0.884134461327927	0	lncRNA	TCONS_00006314	NA	NA	NA	NA	XLOC_002925	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002925), lincRNA [TCONS_00006314]"	chr3:174309092-174309151	hs|3q26.31	Agilent_HUMAN_G3V2	TCONS_00006314	TCONS_00006314	chr3	174309092	174309151	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16098_PI429285431	11.6577425	P	11.7336035	P	0.948775722866136	0	lncRNA	17803-1_{1..510}	lnc-SRCIN1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRCIN1-1:6	chr17	 36608562	 36609071	-	lnc-SRCIN1-1	lnc-SRCIN1-1:6	XLOC_012457	linc-GPR179	ARHGAP23	NA	chr17:36598562-36618643	inner
LNCA_21_P0008587	0.88876885	A	0.89801186	A	0.993613713246685	0	lncRNA	TCONS_00023303	NA	NA	NA	NA	XLOC_011172	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011172), lincRNA [TCONS_00023303]"	chr15:24423027-24423086	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023303	TCONS_00023303	chr15	 24423027	 24423086	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008676	0.88743037	A	0.8958967	A	0.994148772731387	0	lncRNA	TCONS_00023515	NA	NA	NA	NA	XLOC_011359	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011359), lincRNA [TCONS_00023515]"	chr15:93650614-93650673	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00023515	TCONS_00023515	chr15	 93650614	 93650673	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006926	0.88701683	A	0.8952249	A	0.994326753411107	0	lncRNA	TCONS_00018358	NA	NA	NA	NA	XLOC_008643	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008643), lincRNA [TCONS_00018358]"	chr10:122395517-122395576	hs|10q26.12	Agilent_HUMAN_G3V2	TCONS_00018358	TCONS_00018358	chr10	122395517	122395576	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41996_PI429285431	2.5726721	A	2.6881952	A	0.923047566576659	0	lncRNA	43829-1_{1..92}	ENST00000584070 ncrna:miRNA chromosome:GRCh37:20:45795609:45795700:1 gene:ENSG00000264901 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584070 ncrna:miRNA chromosome:GRCh37:20:45795609:45795700:1 gene:ENSG00000264901 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 45795609	 45795700	+	ENSG00000264901	ENST00000584070	NA	NA	EYA2	NA	chr20:45785609-45805700	inner
CUST_21268_PI429285431	2.1921074	A	2.294861	A	0.931253856459495	0	lncRNA	22893-1_{1..806}	lnc-KIAA1755-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1755-1:1	chr20	 36954756	 36955561	-	lnc-KIAA1755-1	lnc-KIAA1755-1:1	ENSG00000206249.3	CTD-2308N23.2	BPI	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BPI:range=chr20:36932614-369655865'pad=0,hg19_refFlat_BPI:range=chr20:36932614-369655865'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10chr20:36944756-36964938"	NA	inner
CUST_7111_PI429285431	0.87932575	A	0.8832569	A	0.997278843537568	0	lncRNA	7047-1_{1..279}	"transcript_id ""ENST00000422226.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422226.1"" | genecode_v17"	chrX	119251552	119251830	-	ENSG00000228139.1	ENST00000422226.1	GS1-421I3.4	GS1-421I3.4-001	RHOXF1	NA	chrX:119243025-119249847	inter
CUST_30213_PI429285431	6.8705873	P	6.920703	P	0.965858866710837	0	lncRNA	31988-1_{1..613}	n335061|AJ583693|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249148|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249148|-0.9977630|-0.0709198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335061|AJ583693|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249148|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249148|-0.9977630|-0.0709198	chr17	  1957508	  1958120	-	NA	NA	NA	NA	SMG6	NA	chr17:1963133-1968533	inner
CUST_26959_PI429285431	0.8897047	A	0.89992183	A	0.992943043236995	0	lncRNA	28481-1_{1..791}	n324042|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053014|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053014|-1.1025500|-0.2969837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324042|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053014|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053014|-1.1025500|-0.2969837	chr9	 92265760	 92266550	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8713_PI429285431	0.8814752	A	1.0516897	A	0.888710537798097	0	lncRNA	10256-2_{3001..3542}	lnc-GTF2B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2B-1:1	chr1	 89153847	 89154388	-	lnc-GTF2B-1	lnc-GTF2B-1:1	ENSG00000237505	RP11-76N22.2	PKN2	NA	chr1:89149922-89160887	inner
LNCA_21_P0003941	1.3715913	A	2.124682	A	0.593331095849784	0	lncRNA	XR_108596	XR_108596	XR_108596	NA	Hs.728549	LOC100505994	uncharacterized LOC100505994	NA	THC2509767	NA	"PREDICTED: Homo sapiens hypothetical LOC100505994 (LOC100505994), miscRNA [XR_108596]"	chr5:90607446-90607387	hs|5q14.3	Agilent_HUMAN_G3V2	XR_108596	XR_108596	chr5	 90607387	 90607446	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36864_PI429285431	3.3319447	A	3.6443145	P	0.805317840828772	0	lncRNA	38024-1_{1..3000}	n345334|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_883|NULL|-1.3778100|-0.2938303	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345334|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_883|NULL|-1.3778100|-0.2938303	chr16	 74347203	 74350202	-	NA	NA	NA	NA	PSMD7	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.51;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.71;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50chr16:74337203-74340186"	NA	inter
CUST_23430_PI429285431	1.2906013	A	0.88239485	A	1.32703502603516	0	lncRNA	24998-1_{1..349}	lnc-RP11-9B6.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-9B6.1.1-2:1	chr4	 93759934	 93760282	-	lnc-RP11-9B6.1.1-2	lnc-RP11-9B6.1.1-2:1	ENSG00000248627.1	RP11-428L21.1	GRID2	NA	chr4:93749934-93769993	inner
CUST_17698_PI429285431	2.5677516	A	3.2751882	P	0.612407306271798	0	lncRNA	19427-1_{1..557}	lnc-ACTR2-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACTR2-3:8	chr2	 65981883	 65982439	+	lnc-ACTR2-3	lnc-ACTR2-3:8	XLOC_001504	linc-MEIS1-4	NA	NA	NA	inter
CUST_15746_PI429285431	5.781519	P	5.94243	P	0.894460079411545	0	lncRNA	17433-1_{1..274}	lnc-FER1L6-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FER1L6-1:3	chr8	125289524	125289797	+	lnc-FER1L6-1	lnc-FER1L6-1:3	XLOC_006915	linc-TRMT12	NA	NA	NA	inter
CUST_5616_PI429285431	0.8885091	A	0.89469546	A	0.995721122601748	0	lncRNA	5544-1_{1..392}	"transcript_id ""ENST00000565061.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565061.1"" | genecode_v17"	chr16	 73846520	 73846911	+	ENSG00000259817.1	ENST00000565061.1	RP11-53L24.1	RP11-53L24.1-001	NA	NA	NA	inter
CUST_11922_PI429285431	6.006768	P	6.0263734	P	0.986502491690757	0	lncRNA	13503-1_{1..1463}	lnc-AC012313.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC012313.1-1:2	chr19	 58919494	 58920956	-	lnc-AC012313.1-1	lnc-AC012313.1-1:2	XLOC_013429	linc-ZNF837	ZNF584	NA	chr19:58920063-58929694	inter
CUST_18714_PI429285431	0.89559394	A	0.8983704	A	0.998077355232993	0	lncRNA	20412-1_{1..412}	lnc-FAM160A1-5:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM160A1-5:6	chr4	152878306	152878717	+	lnc-FAM160A1-5	lnc-FAM160A1-5:6	ENSG00000251249	RP11-73G16.1	NA	NA	NA	inter
LNCA_21_P0002691	0.8806145	A	0.881749	A	0.999213933635818	0	lncRNA	TCONS_00004565	NA	NA	NA	NA	XLOC_002473	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002473), lincRNA [TCONS_00004565]"	chr2:208051091-208051032	hs|2q33.3	Agilent_HUMAN_G3V2	TCONS_00004565	TCONS_00004565	chr2	208051032	208051091	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32399_PI429285431	4.1034174	P	4.63343	P	0.692548685548123	0	lncRNA	34075-1_{1..1764}	n338990|BC040926|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1418|NULL|0.2220630|-0.1170761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338990|BC040926|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1418|NULL|0.2220630|-0.1170761	chr19	 58859116	 58860879	+	NA	NA	NA	NA	ZSCAN22	NA	chr19:58849116-58853712	inner
CUST_33915_PI429285431	6.78646	P	6.708363	P	1.05562469046996	0	lncRNA	35457-1_{1..459}	n340709|AB032364|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3172|NULL|-1.0181000|-0.1646639	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340709|AB032364|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3172|NULL|-1.0181000|-0.1646639	chr5	158398048	158398506	-	NA	NA	NA	NA	EBF1	NA	chr5:158388048-158408508	inner
CUST_52225_PI429285431	1.3973722	A	1.1543555	A	1.1834647209377	0	lncRNA	55738-1_{1..1217}	hg19_lincRNAsTranscripts_TCONS_l2_00031187 range=chrUn_gl000237:1-2686 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00031187 range=chrUn_gl000237:1-2686 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrUn_gl000237	        1	     1217	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34364_PI429285431	2.918449	A	3.6610432	P	0.597663689107683	0	lncRNA	35851-1_{1..1238}	n341232|BC033981|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3700|NULL|3.5215600|-0.3029901	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341232|BC033981|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3700|NULL|3.5215600|-0.3029901	chr7	 41141201	 41142438	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24305_PI429285431	2.8039126	A	2.8623996	A	0.960270657702796	0	lncRNA	25856-1_{1..572}	lnc-TRIM9-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM9-3:1	chr14	 51863718	 51864289	-	lnc-TRIM9-3	lnc-TRIM9-3:1	ENSG00000258808.1	RP11-255G12.3	NA	NA	NA	inter
CUST_14866_PI429285431	0.888002	A	1.1374233	A	0.841233786876729	0	lncRNA	16530-1_{1..489}	lnc-SLC15A4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC15A4-1:2	chr12	128675857	128676345	-	lnc-SLC15A4-1	lnc-SLC15A4-1:2	XLOC_010258	linc-DHX37-12	NA	NA	NA	inter
LNCA_21_P0006216	0.8847601	A	0.88544565	A	0.999524925833852	0	lncRNA	TCONS_00016140	NA	NA	NA	NA	XLOC_007533	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007533), lincRNA [TCONS_00016140]"	chr9:118509947-118660973	hs|9q33.1	Agilent_HUMAN_G3V2	TCONS_00016140	TCONS_00016140	chr9	118509947	118660973	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17308_PI429285431	1.6160356	A	1.4839839	A	1.09585103634316	0	lncRNA	19026-1_{1..2754}	lnc-NMT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NMT2-1:1	chr10	 15231761	 15234514	-	lnc-NMT2-1	lnc-NMT2-1:1	XLOC_008737	linc-NMT2	NA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-17.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10"	NA	inter
CUST_34331_PI429285431	0.90160495	A	0.896328	A	1.00366440057353	0	lncRNA	35824-1_{1..599}	n341194|AF147364|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3660|NULL|-1.0370400|-0.3405710	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341194|AF147364|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3660|NULL|-1.0370400|-0.3405710	chr7	 18039912	 18040510	-	NA	NA	NA	NA	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10"	NA	inter
CUST_29256_PI429285431	7.191928	P	7.3084917	P	0.92238202261455	0	lncRNA	31007-1_{1..253}	n332351|FJ423749|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558580|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558580|0.4027360|-0.2320379	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332351|FJ423749|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558580|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558580|0.4027360|-0.2320379	chr5	140049099	140049351	+	NA	NA	NA	NA	HARS	"hg19_refFlat_DND1:range=chr5:140050878-1400531275'pad=0,hg19_refFlat_DND1:range=chr5:140050878-1400531275'pad=0 3'pad=0 strand=- repeatMasking=none,-94.00chr5:140053490-140060931"	NA	inner
CUST_31963_PI429285431	1.2790942	A	1.4265019	A	0.902871326175964	0	lncRNA	33686-1_{1..2079}	n338520|CR620068|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|918|NULL|0.1520500|-0.2315998	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338520|CR620068|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|918|NULL|0.1520500|-0.2315998	chr14	103606217	103608295	+	NA	NA	NA	NA	TNFAIP2	NA	chr14:103596217-103603776	inter
CUST_23505_PI429285431	4.431411	P	5.168514	P	0.59994285724148	0	lncRNA	25072-1_{1..447}	lnc-RP11-849H4.2.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-849H4.2.1-1:3	chr11	 71524389	 71524835	-	lnc-RP11-849H4.2.1-1	lnc-RP11-849H4.2.1-1:3	ENSG00000248671.2	CTD-2313N18.5	LOC100131539	"hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0,hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0 3'pad=0 strand=- repeatMasking=none,-96.40;hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0,hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0 3'pad=0 strand=- repeatMasking=none,-96.40;hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0,hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.30;hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0,hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0 3'pad=0 strand=- repeatMasking=none,-103.30chr11:71514389-71532522"	NA	inter
CUST_37206_PI429285431	0.90059733	A	0.8974674	A	1.00217185722745	0	lncRNA	38318-1_{1..2346}	n345641|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1190|NULL|-1.1875800|-0.2700204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345641|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1190|NULL|-1.1875800|-0.2700204	chr4	 76465068	 76467413	+	NA	NA	NA	NA	THAP6	NA	chr4:76455068-76455236	inter
CUST_34544_PI429285431	0.9009007	A	0.9054712	A	0.996836983720643	0	lncRNA	36005-1_{1..1668}	n341425|CR616826|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3895|NULL|-1.2292500|-0.3638582	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341425|CR616826|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3895|NULL|-1.2292500|-0.3638582	chr13	102372162	102373829	-	NA	NA	NA	NA	FGF14	NA	chr13:102373205-102383830	inner
CUST_25773_PI429285431	4.053199	P	4.998576	P	0.519293833876533	0	lncRNA	27298-1_{1..396}	lnc-PRR15L-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRR15L-2:2	chr17	 46025297	 46025692	-	lnc-PRR15L-2	lnc-PRR15L-2:2	ENSG00000264019.1	RP11-6N17.6	PNPO	NA	chr17:46018889-46026674	inner
CUST_13272_PI429285431	1.1477411	A	0.8984898	A	1.18859012502799	0	lncRNA	14903-2_{3001..3433}	lnc-ZNF516-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF516-8:1	chr18	 73771277	 73771709	-	lnc-ZNF516-8	lnc-ZNF516-8:1	XLOC_012889	linc-C18orf62-2	NA	NA	NA	inter
CUST_3685_PI429285431	2.0127234	A	2.4748344	A	0.725923285746933	0	lncRNA	3653-1_{1..552}	"transcript_id ""ENST00000593793.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593793.1"" | genecode_v17"	chr10	 46937608	 46938159	-	ENSG00000229227.3	ENST00000593793.1	RP11-38L15.2	RP11-38L15.2-004	SYT15	NA	chr10:46955444-46957552	inter
LNCA_21_P0014187	0.8830961	A	0.88568485	A	0.998207224182166	0	lncRNA	ENST00000420912	XR_108753	XR_108753	NA	Hs.114761	LOC100506289	NA	ENST00000420912	THC2606581	NA	"PREDICTED: Homo sapiens hypothetical LOC100506289 (LOC100506289), miscRNA [XR_108753]"	chr7:26596582-26596641	hs|7p15.2	Agilent_HUMAN_G3V2	ENST00000420912	ENST00000420912	chr7	 26596582	 26596641	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4198_PI429285431	1.1714232	A	3.4501605	A	0.206078042524283	0	lncRNA	4157-1_{1..401}	"transcript_id ""ENST00000540733.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000540733.1"" | genecode_v17"	chr12	 24376205	 24376605	+	ENSG00000256120.1	ENST00000540733.1	RP11-778H2.1	RP11-778H2.1-001	SOX5	NA	chr12:24366205-24390442	inner
CUST_24319_PI429285431	0.90301937	A	0.9217187	A	0.987122249179172	0	lncRNA	25872-1_{1..382}	lnc-DTWD2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DTWD2-1:2	chr5	118406501	118406882	-	lnc-DTWD2-1	lnc-DTWD2-1:2	ENSG00000249494.1	CTB-161M19.4	DMXL1	NA	chr5:118407084-118416556	inter
CUST_18343_PI429285431	1.0394859	A	0.915561	A	1.08969538625862	0	lncRNA	20072-1_{1..1179}	lnc-AL136219.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>lnc-AL136219.1-2:1	chr13	 21922822	 21924000	-	lnc-AL136219.1-2	lnc-AL136219.1-2:1	ENSG00000224429	RP11-101P17.9	ZDHHC20	NA	chr13:21932515-21932860	inter
LNCA_21_P0003512	0.89948845	A	0.9240324	A	0.983131326849813	0	lncRNA	ENST00000504365	XR_109835	XR_109835	NA	Hs.518987	XLOC_004087	NA	ENST00000504365	THC2694033	NA	"PREDICTED: Homo sapiens hypothetical LOC100507528 (LOC100507528), miscRNA [XR_109835]"	chr4:136788262-136788203	hs|4q28.3	Agilent_HUMAN_G3V2	ENST00000504365	ENST00000504365	chr4	136788203	136788262	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31474_PI429285431	3.8823497	P	4.076994	P	0.873788304009898	0	lncRNA	33240-1_{1..247}	n337953|U84509|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|338|NULL|-0.9466450|-0.0540538	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337953|U84509|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|338|NULL|-0.9466450|-0.0540538	chr22	 19967801	 19968047	+	NA	NA	NA	NA	ARVCF	NA	chr22:19957801-19978032	inner
CUST_9677_PI429285431	1.0932968	A	0.9119788	A	1.13391932464307	0	lncRNA	11194-1_{1..314}	lnc-KRTAP13-1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KRTAP13-1-1:1	chr21	 31462086	 31462399	+	lnc-KRTAP13-1-1	lnc-KRTAP13-1-1:1	XLOC_013909	linc-KRTAP13-1-1	NA	NA	NA	inter
CUST_825_PI429285431	1.324388	A	2.1305368	A	0.571906496951916	0	lncRNA	818-1_{1..567}	"transcript_id ""ENST00000422558.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422558.1"" | genecode_v17"	chr2	 34608855	 34609421	+	ENSG00000226785.1	ENST00000422558.1	AC073218.1	AC073218.1-001	NA	NA	NA	inter
CUST_42411_PI429285431	0.90954506	A	0.91523635	A	0.996062869285296	0	lncRNA	45118-1_{1..72}	ENST00000516931 ncrna:snoRNA chromosome:GRCh37:1:163355655:163355726:1 gene:ENSG00000252740 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516931 ncrna:snoRNA chromosome:GRCh37:1:163355655:163355726:1 gene:ENSG00000252740 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	163355655	163355726	+	ENSG00000252740	ENST00000516931	NA	NA	NA	NA	NA	inter
CUST_29793_PI429285431	5.2484083	P	5.2874036	P	0.973332545067807	0	lncRNA	31556-1_{1..277}	n333501|BC033874|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000093255|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000093255|-1.4238400|-0.1898412	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333501|BC033874|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000093255|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000093255|-1.4238400|-0.1898412	chr1	201433395	201433671	-	NA	NA	NA	NA	PHLDA3	NA	chr1:201434622-201438299	inter
CUST_33724_PI429285431	3.7571945	P	3.989763	P	0.851118254960642	0	lncRNA	35283-1_{1..3000}	n340502|BX648465|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2964|NULL|-0.8104540|-0.1589256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340502|BX648465|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2964|NULL|-0.8104540|-0.1589256	chr17	  9074384	  9077383	-	NA	NA	NA	NA	NTN1	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80chr17:9064384-9092435"	NA	inner
CUST_1861_PI429285431	5.0994644	P	4.779515	P	1.24828676666331	0	lncRNA	1851-1_{1..570}	"transcript_id ""ENST00000602573.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602573.1"" | genecode_v17"	chr4	119200215	119200784	+	ENSG00000269893.1	ENST00000602573.1	SNHG8	SNHG8-005	PRSS12	NA	chr4:119201193-119210976	inter
CUST_25789_PI429285431	0.9064713	A	0.92710984	A	0.985796292313593	0	lncRNA	27311-1_{1..3000}	lnc-AEBP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AEBP2-3:1	chr12	 19302410	 19305409	+	lnc-AEBP2-3	lnc-AEBP2-3:1	ENSG00000253284.2	RP11-282K24.3	PLEKHA5	"hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60chr12:19292410-19317593"	NA	inner
LNCA_21_P0009547	0.9051318	A	1.4951061	A	0.664354741680178	0	lncRNA	TCONS_00026495	NA	NA	NA	NA	XLOC_012821	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012821), lincRNA [TCONS_00026495]"	chr18:36171764-36171705	hs|18q12.2	Agilent_HUMAN_G3V2	TCONS_00026495	TCONS_00026495	chr18	 36171705	 36171764	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45224_PI429285431	3.2596107	A	3.7947133	P	0.690109596497456	0	lncRNA	49682-1_{1..2189}	"gi|289191375|ref|NR_033334.1| Homo sapiens transmembrane protein 70 (TMEM70), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|289191375|ref|NR_033334.1| Homo sapiens transmembrane protein 70 (TMEM70), transcript variant 3, non-coding RNA"	Chr8	 74888377	 74890565	+	54968	NR_033334.1	NA	NA	NA	NA	NA	inter
CUST_36893_PI429285431	0.9016174	A	0.91746217	A	0.989077332643793	0	lncRNA	38052-1_{1..1640}	n345365|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_914|NULL|-1.3367400|-0.2770337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345365|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_914|NULL|-1.3367400|-0.2770337	chr18	 60181760	 60183399	-	NA	NA	NA	NA	ZCCHC2	NA	chr18:60190658-60196196	inter
CUST_39175_PI429285431	8.753384	P	9.024082	P	0.828918404189317	0	lncRNA	40151-1_{1..3000}	n385915|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009viw.2||8.5806800|-0.1355947	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385915|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009viw.2||8.5806800|-0.1355947	chr1	    14406	    17405	-	NA	NA	NA	NA	LOC100652771	NA	chr1:12190-13639	inter
CUST_2267_PI429285431	4.0759068	P	4.2807117	P	0.867656014957415	0	lncRNA	2259-1_{1..704}	"transcript_id ""ENST00000507997.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507997.1"" | genecode_v17"	chr5	 95385819	 95386522	+	ENSG00000250551.1	ENST00000507997.1	RP11-254I22.1	RP11-254I22.1-001	NA	NA	NA	inter
CUST_22372_PI429285431	7.261984	P	9.245417	P	0.252887389083327	0	lncRNA	23966-1_{1..3000}	lnc-SNURF-3:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SNURF-3:13	chr15	 25467306	 25470305	+	lnc-SNURF-3	lnc-SNURF-3:13	ENSG00000224078.4	SNHG14	SNRPN	NA	chr15:25457306-25477432	inter
CUST_17397_PI429285431	1.4913352	A	1.7822778	A	0.81736784816835	0	lncRNA	19119-1_{1..1746}	lnc-USP3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP3-1:3	chr15	 63729159	 63730904	+	lnc-USP3-1	lnc-USP3-1:3	XLOC_011284	linc-USP3-1	NA	NA	NA	inter
LNCA_21_P0006114	0.89738137	A	0.91035056	A	0.991050727783272	0	lncRNA	ENST00000435284	NA	NA	NA	NA	XLOC_007886	NA	ENST00000435284	NA	NA	"BROAD Institute lincRNA (XLOC_007886), lincRNA [TCONS_00015892]"	chr9:137437056-137436997	hs|9q34.3	Agilent_HUMAN_G3V2	ENST00000435284	ENST00000435284	chr9	137436997	137437056	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010067	0.89681244	A	0.9095698	A	0.991196253818039	0	lncRNA	TCONS_00028456	NA	NA	NA	NA	XLOC_013824	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013824), lincRNA [TCONS_00028456]"	chr20:58042998-58042939	hs|20q13.32	Agilent_HUMAN_G3V2	TCONS_00028456	TCONS_00028456	chr20	 58042939	 58042998	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9568_PI429285431	0.88154864	A	0.891753	A	0.99295183230081	0	lncRNA	11082-2_{3001..3107}	lnc-ARFGEF2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARFGEF2-2:3	chr20	 47106590	 47106696	+	lnc-ARFGEF2-2	lnc-ARFGEF2-2:3	XLOC_013552	linc-ARFGEF2-3	NA	NA	NA	inter
CUST_16456_PI429285431	1.038264	A	0.89768684	A	1.10234602872985	0	lncRNA	18154-1_{1..1093}	lnc-FAM92B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM92B-2:1	chr16	 85345149	 85346241	-	lnc-FAM92B-2	lnc-FAM92B-2:1	XLOC_012034	linc-FAM92B-1	NA	NA	NA	inter
CUST_14511_PI429285431	0.9178457	A	0.9022076	A	1.01089846519864	0	lncRNA	16177-1_{1..684}	lnc-YTHDF1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-YTHDF1-3:1	chr20	 61783322	 61784005	-	lnc-YTHDF1-3	lnc-YTHDF1-3:1	XLOC_013842	linc-BHLHE23-1	NA	NA	NA	inter
CUST_13492_PI429285431	0.8984362	A	0.8952589	A	1.00220476346121	0	lncRNA	15132-1_{1..1009}	lnc-KLHL25-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL25-8:2	chr15	 86659812	 86660820	-	lnc-KLHL25-8	lnc-KLHL25-8:2	XLOC_011565	linc-KLHL25-3	NA	NA	NA	inter
CUST_31226_PI429285431	0.8905382	A	0.89454156	A	0.997228928828592	0	lncRNA	33018-1_{1..3000}	n337676|CR749394|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|58|NULL|-0.8382520|-0.3061281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337676|CR749394|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|58|NULL|-0.8382520|-0.3061281	chr15	 27607455	 27610454	+	NA	NA	NA	NA	GABRG3	NA	chr15:27597455-27621544	inner
CUST_27017_PI429285431	2.763942	A	3.2091787	P	0.734463804791638	0	lncRNA	28547-1_{1..407}	n324122|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052387|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052387|-1.3341900|-0.3183689	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324122|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052387|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052387|-1.3341900|-0.3183689	chr9	 35776642	 35777048	+	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-19.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-25.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
CUST_11061_PI429285431	4.52014	P	4.617149	P	0.934969365090848	0	lncRNA	12612-1_{1..649}	lnc-STX18-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STX18-1:4	chr4	  4577483	  4578131	-	lnc-STX18-1	lnc-STX18-1:4	XLOC_003863	linc-STX18-1	NA	NA	NA	inter
CUST_3834_PI429285431	4.614072	P	4.6186295	P	0.996845966172795	0	lncRNA	3801-1_{1..450}	"transcript_id ""ENST00000446589.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446589.1"" | genecode_v17"	chr10	130711143	130711592	+	ENSG00000224190.1	ENST00000446589.1	RP11-442O18.2	RP11-442O18.2-001	NA	NA	NA	inter
CUST_9549_PI429285431	3.7639534	P	2.9756258	A	1.72707124735739	0	lncRNA	11064-1_{1..291}	lnc-AC007405.7.1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC007405.7.1-1:6	chr2	171638751	171639041	+	lnc-AC007405.7.1-1	lnc-AC007405.7.1-1:6	XLOC_001748	linc-GAD1-1	LOC285141	NA	chr2:171640296-171648903	inter
CUST_17189_PI429285431	0.90770143	A	0.9029176	A	1.00332140194899	0	lncRNA	18900-1_{1..841}	lnc-CPN2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CPN2-1:5	chr3	194030390	194031230	-	lnc-CPN2-1	lnc-CPN2-1:5	XLOC_003385	linc-ATP13A4-8	NA	NA	NA	inter
CUST_44021_PI429285431	9.255511	P	9.271171	P	0.989204014663791	0	lncRNA	48706-1_{1..1603}	"gi|240848547|ref|NR_027850.1| Homo sapiens metaxin 2 (MTX2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|240848547|ref|NR_027850.1| Homo sapiens metaxin 2 (MTX2), transcript variant 2, non-coding RNA"	Chr2	177134123	177135725	+	10651	NR_027850.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014119	3.9352155	P	4.6718307	P	0.600145742534907	0	lncRNA	ENST00000474250	XR_108493	XR_108493	NA	Hs.559587	LOC100507239	NA	ENST00000474250	THC2504096	NA	"PREDICTED: Homo sapiens hypothetical LOC100507239, transcript variant 3 (LOC100507239), miscRNA [XR_108493]"	chr3:136561134-136561075	hs|3q22.3	Agilent_HUMAN_G3V2	ENST00000474250	ENST00000474250	chr3	136561075	136561134	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31068_PI429285431	8.3692255	P	8.238971	P	1.09448675821654	0	lncRNA	32858-1_{1..325}	n337299|BC128525|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389890|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389890|-1.2633800|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337299|BC128525|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389890|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389890|-1.2633800|-1.0000000	chr17	 26700694	 26701018	-	NA	NA	NA	NA	SARM1	NA	chr17:26698987-26711019	inner
LNCA_21_P0006740	0.8845014	A	0.89131176	A	0.995290542602335	0	lncRNA	ENST00000452911	NA	AL137590	NA	Hs.409816	XLOC_008751	NA	ENST00000452911	THC2588117	NA	"BROAD Institute lincRNA (XLOC_008751), lincRNA [TCONS_00017939]"	chr10:26213450-26213391	hs|10p12.1	Agilent_HUMAN_G3V2	ENST00000452911	ENST00000452911	chr10	 26213391	 26213450	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11879_PI429285431	3.0880184	P	2.6039367	A	1.39869528878427	0	lncRNA	13460-1_{1..424}	lnc-STEAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STEAP1-1:1	chr7	 89468469	 89468892	+	lnc-STEAP1-1	lnc-STEAP1-1:1	XLOC_006164	linc-STEAP1-2	NA	NA	NA	inter
CUST_24062_PI429285431	0.9064754	A	0.89706045	A	1.00654728643033	0	lncRNA	25612-1_{1..2797}	lnc-ANKH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ANKH-1:1	chr5	 14661917	 14664713	-	lnc-ANKH-1	lnc-ANKH-1:1	ENSG00000261360.1	CTD-2165H16.4	FAM105B	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60chr5:14651917-14674713"	NA	inter
LNCA_21_P0012978	0.88233376	A	2.3352327	A	0.365286681872866	0	lncRNA	ENST00000505339	NA	NA	NA	NA	XLOC_l2_011983	NA	ENST00000505339	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011983), lincRNA [TCONS_l2_00023706]"	chr5:33023266-33023207	hs|5p13.3	Agilent_HUMAN_G3V2	ENST00000505339	ENST00000505339	chr5	 33023207	 33023266	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007098	4.6075606	P	4.7451143	P	0.909059291889579	0	lncRNA	TCONS_00018898	NA	NA	NA	NA	XLOC_008763	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008763), lincRNA [TCONS_00018898]"	chr10:30132088-30132029	hs|10p11.23	Agilent_HUMAN_G3V2	TCONS_00018898	TCONS_00018898	chr10	 30132029	 30132088	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00317159	3.30224	P	3.3787615	P	0.94834145025985	0	lncRNA	ENST00000499046	XR_108576	XR_108576	NA	NA	LOC100506639	NA	ENST00000499046	NA	GO:0005622|GO:0006355|GO:0003700|GO:0008270|GO:0005634|GO:0003677|GO:0046872	"PREDICTED: Homo sapiens hypothetical LOC100506639 (LOC100506639), miscRNA [XR_108576]"	chr5:43093174-43093233	hs|5p12	Agilent_HUMAN_G3V2	ENST00000499046	ENST00000499046	chr5	 43093174	 43093233	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3410_PI429285431	2.0927186	A	2.3357916	A	0.844943629399331	0	lncRNA	3382-1_{1..768}	"transcript_id ""ENST00000589112.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589112.1"" | genecode_v17"	chr9	 42470500	 42471267	+	ENSG00000223839.3	ENST00000589112.1	FAM95B1	FAM95B1-014	CBWD7	NA	chr9:42478004-42484129	inter
CUST_45243_PI429285431	2.398831	A	0.90877616	A	2.80899652556014	0	lncRNA	49697-1_{1..1365}	"gi|306518576|ref|NR_036611.1| Homo sapiens serine/arginine-rich splicing factor 3 pseudogene (LOC100500773), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|306518576|ref|NR_036611.1| Homo sapiens serine/arginine-rich splicing factor 3 pseudogene (LOC100500773), non-coding RNA"	Chr8	 96959212	 96960576	-	100500773	NR_036611.1	NA	NA	NA	NA	NA	inter
CUST_861_PI429285431	4.491768	P	5.113101	P	0.650070008089673	0	lncRNA	855-1_{1..367}	"transcript_id ""ENST00000423433.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423433.1"" | genecode_v17"	chr2	 45240353	 45240719	-	ENSG00000231156.1	ENST00000423433.1	AC093702.1	AC093702.1-001	SIX2	NA	chr2:45232324-45236542	inter
CUST_9312_PI429285431	1.6671444	A	0.9188329	A	1.67982564687185	0	lncRNA	10818-1_{1..650}	lnc-HSPB11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HSPB11-1:1	chr1	 54378810	 54379459	-	lnc-HSPB11-1	lnc-HSPB11-1:1	XLOC_000839	linc-YIPF1	HSPB11	NA	chr1:54387234-54388843	inter
CUST_42388_PI429285431	2.0893595	A	2.0161693	A	1.05204046749329	0	lncRNA	45082-1_{1..80}	ENST00000384320 ncrna:snoRNA chromosome:GRCh37:2:207026602:207026681:1 gene:ENSG00000207047 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384320 ncrna:snoRNA chromosome:GRCh37:2:207026602:207026681:1 gene:ENSG00000207047 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	207026602	207026681	+	ENSG00000207047	ENST00000384320	NA	NA	NDUFS1	NA	chr2:207016602-207024243	inter
CUST_9246_PI429285431	0.879478	A	0.8811316	A	0.998854468445	0	lncRNA	10756-1_{1..1054}	lnc-CYB5R2-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYB5R2-3:5	chr11	  7486984	  7488037	-	lnc-CYB5R2-3	lnc-CYB5R2-3:5	ENSG00000251364	ENSG00000251364.2	SYT9	NA	chr11:7476984-7490276	inner
CUST_46100_PI429285431	4.677875	P	3.5452754	P	2.1925345851605	0	lncRNA	50364-1_{1..2692}	"gi|221139737|ref|NR_024072.2| Homo sapiens MRS2 magnesium homeostasis factor homolog (S. cerevisiae) pseudogene 2 (MRS2P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|221139737|ref|NR_024072.2| Homo sapiens MRS2 magnesium homeostasis factor homolog (S. cerevisiae) pseudogene 2 (MRS2P2), non-coding RNA"	Chr12	 72242072	 72244763	-	729633	NR_024072.2	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50"	NA	inter
CUST_46384_PI429285431	4.9260283	P	5.183332	P	0.836650101936532	0	lncRNA	50601-1_{1..1678}	"gi|310123156|ref|XR_110246.1| PREDICTED: Homo sapiens uncharacterized LOC100130815 (LOC100130815), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123156|ref|XR_110246.1| PREDICTED: Homo sapiens uncharacterized LOC100130815 (LOC100130815), misc_RNA"	NA	NA	NA	NA	NA	XR_110246.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006831	1.7831427	A	0.88213897	A	1.86736471778192	0	lncRNA	TCONS_00018115	NA	NA	NA	NA	XLOC_008375	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008375), lincRNA [TCONS_00018115]"	chr10:7118270-7118329	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018115	TCONS_00018115	chr10	  7118270	  7118329	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22023_PI429285431	0.8908421	A	0.9006742	A	0.993208077682902	0	lncRNA	23632-1_{1..3000}	lnc-XPC-5:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XPC-5:6	chr3	 14567358	 14570357	-	lnc-XPC-5	lnc-XPC-5:6	ENSG00000144596.7	GRIP2	GRIP2	NA	chr3:14557358-14577490	inner
LNCA_21_P0013548	0.8914368	A	2.0507545	A	0.447724229555972	0	lncRNA	THC2707131	NA	NA	NA	NA	XLOC_l2_014694	NA	NA	THC2707131	NA	"BROAD Institute lincRNA (XLOC_l2_014694), lincRNA [TCONS_l2_00028604]"	chr9:003647530-003647589	hs|9p24.2	Agilent_HUMAN_G3V2	THC2707131	THC2707131	chr9	  3647530	  3647589	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39028_PI429285431	1.3222936	A	0.9044638	A	1.33591646615145	0	lncRNA	40008-1_{1..1937}	n385386|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xnb.2||3.3099600|-0.2704849	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385386|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xnb.2||3.3099600|-0.2704849	chr8	 39172181	 39174117	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25078_PI429285431	2.6929572	P	3.2320793	P	0.688189554597701	0	lncRNA	26615-1_{1..468}	lnc-BLID-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BLID-2:6	chr11	122179958	122180425	-	lnc-BLID-2	lnc-BLID-2:6	ENSG00000255090.1	RP11-820L6.1	NA	NA	NA	inter
CUST_17928_PI429285431	0.90461427	A	1.0552776	A	0.900836176127847	0	lncRNA	19660-1_{1..702}	lnc-PM20D2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PM20D2-1:1	chr6	 89853182	 89853883	+	lnc-PM20D2-1	lnc-PM20D2-1:1	XLOC_005377	linc-PM20D2	PM20D2	NA	chr6:89855769-89863352	inter
CUST_33141_PI429285431	4.2875566	P	3.7170486	P	1.48504639128148	0	lncRNA	34737-1_{1..1297}	n339830|AF539739|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2277|NULL|1.2088600|-0.1210947	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339830|AF539739|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2277|NULL|1.2088600|-0.1210947	chr4	  6694795	  6696091	+	NA	NA	NA	NA	S100P	NA	chr4:6695566-6698897	inner
CUST_26362_PI429285431	5.4235578	P	6.014795	P	0.663773436234037	0	lncRNA	27869-1_{1..2795}	lnc-GGCT-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GGCT-1:4	chr7	 30634327	 30637121	-	lnc-GGCT-1	lnc-GGCT-1:4	ENSG00000196295.5	AC005154.6	GARS	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00chr7:30634181-30644385"	NA	inner
CUST_27752_PI429285431	2.223915	A	1.8684915	A	1.27936107983135	0	lncRNA	29334-1_{1..3000}	n324969|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079620|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079620|-0.9013680|-0.2216864	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324969|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079620|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079620|-0.9013680|-0.2216864	chr20	 46422099	 46425098	+	NA	NA	NA	NA	SULF2	"hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10chr20:46412099-46415360"	NA	inter
CUST_22705_PI429285431	8.851182	P	9.128493	P	0.825127517612816	0	lncRNA	24289-1_{1..2428}	lnc-ACOT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACOT1-2:1	chr14	 73957669	 73960096	+	lnc-ACOT1-2	lnc-ACOT1-2:1	ENSG00000255242.1	C14orf169	HEATR4	"hg19_refFlat_HEATR4:range=chr14:73945311-739898565'pad=0,hg19_refFlat_HEATR4:range=chr14:73945311-739898565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90chr14:73947669-73970096"	NA	inner
LNCA_21_P0014286	0.92938787	A	0.8875041	A	1.02945714239634	0	lncRNA	XR_109148	XR_109148	XR_109148	NA	NA	LOC100507566	uncharacterized LOC100507566	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507566 (LOC100507566), miscRNA [XR_109148]"	chr13:97824695-97824636	hs|13q32.1	Agilent_HUMAN_G3V2	XR_109148	XR_109148	chr13	 97824636	 97824695	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44528_PI429285431	3.751057	P	3.2095056	A	1.45553688550785	0	lncRNA	49122-1_{1..1545}	"gi|410170484|ref|XR_108576.3| PREDICTED: Homo sapiens uncharacterized LOC100506639 (LOC100506639), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410170484|ref|XR_108576.3| PREDICTED: Homo sapiens uncharacterized LOC100506639 (LOC100506639), misc_RNA"	NA	NA	NA	NA	NA	XR_108576.3	NA	NA	NA	NA	NA	Unknown
CUST_24904_PI429285431	5.982588	P	5.8768406	P	1.0760517034962	0	lncRNA	26445-1_{1..679}	lnc-CNPY3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CNPY3-1:1	chr6	 42911536	 42912214	+	lnc-CNPY3-1	lnc-CNPY3-1:1	ENSG00000231113.1	RP3-475N16.1	CNPY3	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80chr6:42901536-42907008"	NA	inter
CUST_48405_PI429285431	0.9095746	A	0.8974107	A	1.00846701712075	0	lncRNA	52258-1_{1..900}	hg19_lincRNAsTranscripts_TCONS_l2_00000553 range=chr1:142826654-142829106 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000553 range=chr1:142826654-142829106 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	142826654	142827553	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36750_PI429285431	3.1116552	A	3.784314	P	0.627349454003475	0	lncRNA	37923-1_{1..695}	n345230|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_779|NULL|-1.3356600|-0.3788055	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345230|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_779|NULL|-1.3356600|-0.3788055	chr13	 74011657	 74012351	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41153_PI429285431	1.1883552	A	0.9111309	A	1.21186105735281	0	lncRNA	41959-1_{1..95}	ENST00000385248 ncrna:miRNA chromosome:GRCh37:12:12917583:12917677:1 gene:ENSG00000207983 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385248 ncrna:miRNA chromosome:GRCh37:12:12917583:12917677:1 gene:ENSG00000207983 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 12917583	 12917677	+	ENSG00000207983	ENST00000385248	NA	NA	APOLD1	NA	chr12:12907583-12927677	inner
LNCA_21_P0013291	2.1284125	A	0.8865053	A	2.36510986213047	0	lncRNA	ENST00000423689	NA	AK057379	NA	NA	XLOC_l2_013751	NA	ENST00000423689	THC2505963	NA	"BROAD Institute lincRNA (XLOC_l2_013751), lincRNA [TCONS_l2_00026436]"	chr7:25702434-25702375	hs|7p15.2	Agilent_HUMAN_G3V2	ENST00000423689	ENST00000423689	chr7	 25702375	 25702434	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46486_PI429285431	5.2349114	P	3.9438329	P	2.44710923088007	0	lncRNA	50681-2_{3001..3289}	"gi|110578651|ref|NR_003105.1| Homo sapiens Zwilch, kinetochore associated, homolog (Drosophila) (ZWILCH), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|110578651|ref|NR_003105.1| Homo sapiens Zwilch, kinetochore associated, homolog (Drosophila) (ZWILCH), transcript variant 2, non-coding RNA"	Chr15	 66800431	 66800719	+	55055	NR_003105.1	NA	NA	NA	"hg19_refFlat_LCTL:range=chr15:66840828-668577035'pad=0,hg19_refFlat_LCTL:range=chr15:66840828-668577035'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10"	NA	inter
CUST_43517_PI429285431	2.6477308	A	1.5294108	A	2.1709402203139	0	lncRNA	48302-1_{1..3000}	"gi|282165815|ref|NR_030761.1| Homo sapiens transmembrane emp24 protein transport domain containing 5 (TMED5), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|282165815|ref|NR_030761.1| Homo sapiens transmembrane emp24 protein transport domain containing 5 (TMED5), transcript variant 3, non-coding RNA"	Chr1	 93615299	 93618298	-	50999	NR_030761.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80"	NA	inter
CUST_32118_PI429285431	1.4833972	A	1.6441301	A	0.894570506888587	0	lncRNA	33819-1_{1..1755}	n338683|AK025063|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1100|NULL|-1.2415100|-0.4150585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338683|AK025063|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1100|NULL|-1.2415100|-0.4150585	chr2	 14776708	 14778462	-	NA	NA	NA	NA	FAM84A	NA	chr2:14772810-14780170	inner
CUST_21280_PI429285431	3.2377055	P	3.8942165	P	0.634410696077282	0	lncRNA	22905-1_{1..386}	lnc-ACAP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ACAP3-1:1	chr1	  1254003	  1254388	-	lnc-ACAP3-1	lnc-ACAP3-1:1	ENSG00000240731.1	RP5-890O3.9	GLTPD1	NA	chr1:1260143-1264069	inner
CUST_9365_PI429285431	0.8825644	A	0.88067555	A	1.00131010849532	0	lncRNA	10866-4_{9001..10397}	lnc-POTEJ-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POTEJ-1:1	chr2	131446298	131447694	+	lnc-POTEJ-1	lnc-POTEJ-1:1	XLOC_001671	linc-GPR148-2	NA	NA	NA	inter
CUST_18760_PI429285431	0.8757038	A	0.8808049	A	0.996470430543391	0	lncRNA	20456-1_{1..1531}	lnc-C14orf49-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C14orf49-4:3	chr14	 96000372	 96001902	-	lnc-C14orf49-4	lnc-C14orf49-4:3	ENSG00000247092	SNHG10	GLRX5	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-59.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70chr14:96001323-96011055"	NA	inter
CUST_46982_PI429285431	0.8992009	A	0.9232765	A	0.983450537972814	0	lncRNA	51083-2_{3001..3706}	"gi|309951084|ref|NR_036752.1| Homo sapiens nucleolar protein 4 (NOL4), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|309951084|ref|NR_036752.1| Homo sapiens nucleolar protein 4 (NOL4), transcript variant 6, non-coding RNA"	Chr18	 31434064	 31434769	-	8715	NR_036752.1	NA	NA	NA	NA	NA	inter
LNCA_24_P384029	2.26948	A	3.8723402	P	0.329223631389533	0	lncRNA	XR_132490	XR_132490	XR_132490	100130171	NA	LOC100130171	hematological and neurological expressed 1 pseudogene	NA	NA	NA	"PREDICTED: Homo sapiens hematological and neurological expressed 1 protein-like (LOC100130171), miscRNA [XR_132490]"	chr2:174296291-174296230	hs|2q31.1	Agilent_HUMAN_G3V2	XR_132490	XR_132490	chr2	174296230	174296291	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44843_PI429285431	1.5478739	A	0.91962314	A	1.5456897378265	0	lncRNA	49371-1_{1..1125}	"gi|310119873|ref|XR_110196.1| PREDICTED: Homo sapiens uncharacterized LOC729658 (LOC729658), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119873|ref|XR_110196.1| PREDICTED: Homo sapiens uncharacterized LOC729658 (LOC729658), misc_RNA"	Chr6	163586446	163587570	-	729658	XR_110196.1	NA	NA	NA	NA	NA	inter
CUST_14273_PI429285431	0.8983761	A	0.90997595	A	0.991991834261456	0	lncRNA	15931-1_{1..1692}	lnc-U2SURP-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-U2SURP-3:3	chr3	142660241	142661932	+	lnc-U2SURP-3	lnc-U2SURP-3:3	XLOC_002845	linc-SR140-2	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40"	NA	inter
CUST_28922_PI429285431	0.89570767	A	0.9108165	A	0.989582004275553	0	lncRNA	30639-1_{1..930}	n326347|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000083236|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000083236|-1.2726400|-0.4101495	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326347|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000083236|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000083236|-1.2726400|-0.4101495	chr1	165411934	165412863	-	NA	NA	NA	NA	RXRG	NA	chr1:165401934-165414592	inter
CUST_47446_PI429285431	2.794092	A	2.7423425	A	1.0365211107418	0	lncRNA	51478-1_{1..1978}	"gi|223468582|ref|NR_026815.1| Homo sapiens transmembrane protein 191A (pseudogene) (TMEM191A), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223468582|ref|NR_026815.1| Homo sapiens transmembrane protein 191A (pseudogene) (TMEM191A), non-coding RNA"	Chr22	 21055402	 21057379	+	84222	NR_026815.1	NA	NA	NA	NA	NA	inter
CUST_41668_PI429285431	5.8220263	P	6.158158	P	0.792162493103502	0	lncRNA	43097-1_{1..82}	ENST00000408207 ncrna:miRNA chromosome:GRCh37:16:49713131:49713212:1 gene:ENSG00000221134 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408207 ncrna:miRNA chromosome:GRCh37:16:49713131:49713212:1 gene:ENSG00000221134 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 49713131	 49713212	+	ENSG00000221134	ENST00000408207	NA	NA	ZNF423	NA	chr16:49703131-49723212	inner
CUST_5918_PI429285431	1.4347014	A	1.1004229	A	1.26074674452343	0	lncRNA	5846-2_{3001..3989}	"transcript_id ""ENST00000579991.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579991.1"" | genecode_v17"	chr17	 56171909	 56172897	+	ENSG00000264364.1	ENST00000579991.1	RP11-159D12.9	RP11-159D12.9-001	DYNLL2	NA	chr17:56160780-56167618	inter
LNCA_21_P0003053	0.90632606	A	2.1471994	A	0.423116443763872	0	lncRNA	THC2682256	NA	NA	NA	NA	XLOC_002899	NA	NA	THC2682256	NA	"BROAD Institute lincRNA (XLOC_002899), lincRNA [TCONS_00006292]"	chr3:164137221-164137280	hs|3q26.1	Agilent_HUMAN_G3V2	THC2682256	THC2682256	chr3	164137221	164137280	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007639	0.90631735	A	0.92661095	A	0.986032018657369	0	lncRNA	TCONS_00020585	NA	NA	NA	NA	XLOC_009899	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009899), lincRNA [TCONS_00020585]"	chr12:117113594-117113653	hs|12q24.22	Agilent_HUMAN_G3V2	TCONS_00020585	TCONS_00020585	chr12	117113594	117113653	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42043_PI429285431	6.4513974	P	4.144461	P	4.94831176776923	0	lncRNA	43933-1_{1..92}	ENST00000578704 ncrna:miRNA chromosome:GRCh37:22:20837512:20837603:-1 gene:ENSG00000265300 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578704 ncrna:miRNA chromosome:GRCh37:22:20837512:20837603:-1 gene:ENSG00000265300 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 20837512	 20837603	-	ENSG00000265300	ENST00000578704	NA	NA	KLHL22	NA	chr22:20827512-20847603	inter
CUST_3961_PI429285431	7.4447103	P	7.84768	P	0.756299882557257	0	lncRNA	3931-1_{1..554}	"transcript_id ""ENST00000534856.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534856.1"" | genecode_v17"	chr11	 61263912	 61264465	+	ENSG00000255931.1	ENST00000534856.1	RP11-286N22.10	RP11-286N22.10-001	LRRC10B	NA	chr11:61276272-61277548	inter
CUST_42103_PI429285431	8.117416	P	8.387044	P	0.829533414054147	0	lncRNA	44060-1_{1..73}	ENST00000578735 ncrna:miRNA chromosome:GRCh37:19:18497372:18497444:1 gene:ENSG00000264175 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578735 ncrna:miRNA chromosome:GRCh37:19:18497372:18497444:1 gene:ENSG00000264175 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 18497372	 18497444	+	ENSG00000264175	ENST00000578735	NA	NA	GDF15	NA	chr19:18496968-18499986	inner
CUST_15104_PI429285431	1.5027767	A	1.1208512	A	1.30307985727923	0	lncRNA	16769-1_{1..1487}	lnc-RNASEH2B-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNASEH2B-3:5	chr13	 51102316	 51103802	+	lnc-RNASEH2B-3	lnc-RNASEH2B-3:5	XLOC_010390	linc-RNASEH2B-1	NA	NA	NA	inter
CUST_31099_PI429285431	10.631326	P	10.610865	P	1.01428353303567	0	lncRNA	32890-1_{1..332}	n337378|DQ655958|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393071|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393071|-0.8301930|-0.0543029	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337378|DQ655958|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393071|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393071|-0.8301930|-0.0543029	chrX	153717054	153717385	+	NA	NA	NA	NA	UBL4A	"hg19_refFlat_SLC10A3:range=chrX:153715846-1537172795'pad=0,hg19_refFlat_SLC10A3:range=chrX:153715846-1537172795'pad=0 3'pad=0 strand=- repeatMasking=none,-99.80chrX:153712056-153714932"	NA	inner
CUST_32822_PI429285431	3.4429975	P	1.9233196	A	2.86727027004324	0	lncRNA	34457-1_{1..2940}	n339470|S75295|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1908|NULL|9.7113900|-0.3053068	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339470|S75295|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1908|NULL|9.7113900|-0.3053068	chr3	122144526	122147465	-	NA	NA	NA	NA	KPNA1	NA	chr3:122140748-122233786	inter
CUST_43778_PI429285431	1.2274628	A	2.0677834	A	0.558519439386782	0	lncRNA	48510-1_{1..608}	"gi|397138937|ref|XR_158987.1| PREDICTED: Homo sapiens uncharacterized LOC100996637 (LOC100996637), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397138937|ref|XR_158987.1| PREDICTED: Homo sapiens uncharacterized LOC100996637 (LOC100996637), misc_RNA"	NA	NA	NA	NA	NA	XR_158987.1	NA	NA	NA	NA	NA	Unknown
CUST_26048_PI429285431	1.3001475	A	1.073748	A	1.16991158210683	0	lncRNA	27563-1_{1..567}	lnc-SYT13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SYT13-1:1	chr11	 45256666	 45257232	-	lnc-SYT13-1	lnc-SYT13-1:1	ENSG00000254664.1	CTD-2560E9.3	PRDM11	NA	chr11:45246666-45246903	inner
CUST_26802_PI429285431	0.9170836	A	0.9093356	A	1.00538495136449	0	lncRNA	28312-1_{1..644}	n323868|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056910|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056910|-0.8803040|-0.4851310	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323868|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056910|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056910|-0.8803040|-0.4851310	chrX	 57016667	 57017310	+	NA	NA	NA	NA	SPIN3	NA	chrX:57006667-57021988	inter
CUST_26773_PI429285431	0.89233565	A	0.89473504	A	0.998338251821437	0	lncRNA	28272-1_{1..1229}	n323825|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057749|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057749|1.4132200|-0.4909176	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323825|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057749|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057749|1.4132200|-0.4909176	chrX	103058660	103059888	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.93;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00"	NA	inter
CUST_26551_PI429285431	1.449146	A	1.0392069	A	1.3286297279134	0	lncRNA	28055-1_{1..1722}	lnc-COG7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-COG7-1:1	chr16	 23474937	 23476658	-	lnc-COG7-1	lnc-COG7-1:1	ENSG00000260208.1	CTD-2270L9.5	GGA2	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20chr16:23474863-23486658"	NA	inner
CUST_29452_PI429285431	1.2112988	A	2.1240764	A	0.531161468628483	0	lncRNA	31209-1_{1..553}	n332855|AF075111|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066133|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066133|0.4185850|-0.3044564	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332855|AF075111|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066133|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066133|0.4185850|-0.3044564	chr5	 72306171	 72306723	-	NA	NA	NA	NA	FCHO2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00chr5:72296171-72316724"	NA	inner
CUST_32357_PI429285431	7.5449877	P	7.834258	P	0.818315849465836	0	lncRNA	34035-2_{3001..3894}	n338940|AK127841|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1367|NULL|-0.8383220|-0.2248273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338940|AK127841|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1367|NULL|-0.8383220|-0.2248273	chr2	113600904	113601797	+	NA	NA	NA	NA	IL1B	NA	chr2:113587904-113594356	inter
CUST_48106_PI429285431	4.20129	P	4.5290785	P	0.796756892785548	0	lncRNA	51979-1_{1..1000}	"gi|397138485|ref|XR_159504.1| PREDICTED: Homo sapiens uncharacterized LOC729732 (LOC729732), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138485|ref|XR_159504.1| PREDICTED: Homo sapiens uncharacterized LOC729732 (LOC729732), misc_RNA"	NA	NA	NA	NA	NA	XR_159504.1	NA	NA	NA	NA	NA	Unknown
CUST_30543_PI429285431	5.946888	P	5.278966	P	1.58878289955989	0	lncRNA	32323-1_{1..500}	n335714|CR624203|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000303398|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000303398|-1.0394700|-0.2768608	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335714|CR624203|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000303398|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000303398|-1.0394700|-0.2768608	chr9	 82186891	 82187390	+	NA	NA	NA	NA	TLE4	NA	chr9:82186878-82197391	inner
CUST_45100_PI429285431	3.5030465	P	3.4854825	P	1.01224884719896	0	lncRNA	49583-2_{3001..3084}	"gi|224451010|ref|NR_027040.1| Homo sapiens ATP6V0E2 antisense RNA 1 (ATP6V0E2-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224451010|ref|NR_027040.1| Homo sapiens ATP6V0E2 antisense RNA 1 (ATP6V0E2-AS1), non-coding RNA"	Chr7	149567783	149567866	-	401431	NR_027040.1	NA	NA	NA	NA	NA	inter
CUST_19375_PI429285431	5.784496	P	6.1254725	P	0.789506746838642	0	lncRNA	21037-1_{1..571}	lnc-ZDHHC17-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZDHHC17-2:1	chr12	 77273668	 77274238	+	lnc-ZDHHC17-2	lnc-ZDHHC17-2:1	ENSG00000257910.1	RP11-461F16.3	CSRP2	NA	chr12:77263668-77272799	inter
CUST_31333_PI429285431	10.436028	P	9.998084	P	1.35467239317322	0	lncRNA	33115-2_{3001..4516}	n337799|S68616|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|181|NULL|12.8869000|-0.1050973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337799|S68616|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|181|NULL|12.8869000|-0.1050973	chr1	 27428306	 27429821	-	NA	NA	NA	NA	SLC9A1	NA	chr1:27425300-27481451	inter
CUST_51810_PI429285431	8.771196	P	8.439627	P	1.25838118045306	0	lncRNA	55363-1_{1..773}	hg19_lincRNAsTranscripts_TCONS_l2_00012419 range=chr19:23281002-23283410 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012419 range=chr19:23281002-23283410 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 23281002	 23281774	+	NA	NA	NA	NA	ZNF730	NA	chr19:23271002-23293410	inter
CUST_32447_PI429285431	0.90354764	A	1.2526466	A	0.785074265564121	0	lncRNA	34119-1_{1..1754}	n339046|AK056136|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1475|NULL|-0.9828460|-0.4560558	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339046|AK056136|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1475|NULL|-0.9828460|-0.4560558	chr2	182991663	182993416	+	NA	NA	NA	NA	PPP1R1C	NA	chr2:182981663-182982419	inner
LNCA_21_P0011534	2.0914605	A	2.3841584	A	0.816373976771319	0	lncRNA	TCONS_l2_00010636	NA	NA	NA	NA	XLOC_l2_005714	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005714), lincRNA [TCONS_l2_00010636]"	chr17:21909677-21912473	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00010636	TCONS_l2_00010636	chr17	 21909677	 21912473	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40484_PI429285431	0.9004068	A	0.89534086	A	1.00351761436293	0	lncRNA	41249-1_{1..2609}	n409419|NR_033821_2|lncRNA|Homosapiens||RefGeneNoncode|NR_033821_2||-1.0000000|-0.2209431	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409419|NR_033821_2|lncRNA|Homosapiens||RefGeneNoncode|NR_033821_2||-1.0000000|-0.2209431	chr6	  1888250	  1890858	+	NA	NA	NA	NA	GMDS	NA	chr6:1878250-1916085	inner
LNCA_21_P0006879	0.88340116	A	0.8893087	A	0.995913577545319	0	lncRNA	TCONS_00018225	NA	NA	NA	NA	XLOC_008503	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008503), lincRNA [TCONS_00018225]"	chr10:69609962-69610021	hs|10q21.3	Agilent_HUMAN_G3V2	TCONS_00018225	TCONS_00018225	chr10	 69609962	 69610021	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34278_PI429285431	3.1335206	P	3.2394705	A	0.929192941470769	0	lncRNA	35777-1_{1..422}	n341136|AY545553|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3602|NULL|-1.0062400|-0.1896939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341136|AY545553|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3602|NULL|-1.0062400|-0.1896939	chr11	119207335	119207756	-	NA	NA	NA	NA	C1QTNF5	NA	chr11:119209652-119217383	inner
LNCA_21_P0010672	2.4168541	A	1.92872	A	1.40262962046093	0	lncRNA	TCONS_l2_00001781	NA	NA	NA	NA	XLOC_l2_001310	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001310), lincRNA [TCONS_l2_00001781]"	chr1:219323300-219268633	hs|1q41	Agilent_HUMAN_G3V2	TCONS_l2_00001781	TCONS_l2_00001781	chr1	219268633	219323300	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23236_PI429285431	3.2179332	P	3.2659483	P	0.967266205647517	0	lncRNA	24808-1_{1..525}	lnc-PHF3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHF3-2:1	chr6	 65122529	 65123053	+	lnc-PHF3-2	lnc-PHF3-2:1	ENSG00000232120.1	RP11-349P19.1	EYS	NA	chr6:65112529-65132672	inner
CUST_21237_PI429285431	0.881269	A	0.887919	A	0.995401178362145	0	lncRNA	22863-1_{1..847}	lnc-TIMM21-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMM21-4:2	chr18	 71016319	 71017165	+	lnc-TIMM21-4	lnc-TIMM21-4:2	ENSG00000261780.2	CTD-2354A18.1	NA	NA	NA	inter
CUST_10333_PI429285431	0.9062087	A	1.7249517	A	0.566935690652348	0	lncRNA	11861-1_{1..618}	lnc-ARHGEF5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGEF5-2:2	chr7	144855171	144855788	+	lnc-ARHGEF5-2	lnc-ARHGEF5-2:2	XLOC_006283	linc-CNTNAP2-1	NA	NA	NA	inter
CUST_33287_PI429285431	0.8929699	A	0.8949512	A	0.998627610080701	0	lncRNA	34870-1_{1..2823}	n339998|AL137590|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2451|NULL|-1.1269100|-0.3052057	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339998|AL137590|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2451|NULL|-1.1269100|-0.3052057	chr10	 26213306	 26216128	-	NA	NA	NA	NA	MYO3A	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-27.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80chr10:26223002-26227199"	NA	inter
CUST_22060_PI429285431	5.8768406	P	5.786539	P	1.06459271569481	0	lncRNA	23668-1_{1..3000}	lnc-GABRB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-GABRB1-1:1	chr4	 47433977	 47436976	+	lnc-GABRB1-1	lnc-GABRB1-1:1	ENSG00000260918.1	RP11-731J8.2	GABRB1	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chr4:47423977-47428462"	NA	inter
LNCA_21_P0003245	9.54202	P	9.564387	P	0.984615939493947	0	lncRNA	TCONS_00006917	NA	NA	NA	NA	XLOC_002730	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002730), lincRNA [TCONS_00006917]"	chr3:96336742-96337006	hs|3q11.2	Agilent_HUMAN_G3V2	TCONS_00006917	TCONS_00006917	chr3	 96336742	 96337006	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17653_PI429285431	1.1341989	A	0.8902104	A	1.18426217183418	0	lncRNA	19382-1_{1..2227}	lnc-ZNF792-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF792-2:1	chr19	 35384248	 35386474	-	lnc-ZNF792-2	lnc-ZNF792-2:1	XLOC_013309	linc-ZNF599-2	NA	NA	NA	inter
CUST_43438_PI429285431	6.3625298	P	6.7438087	P	0.767756698739496	0	lncRNA	48246-1_{1..2173}	"gi|395132433|ref|NR_073018.1| Homo sapiens ST3 beta-galactoside alpha-2,3-sialyltransferase 3 (ST3GAL3), transcript variant 21, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|395132433|ref|NR_073018.1| Homo sapiens ST3 beta-galactoside alpha-2,3-sialyltransferase 3 (ST3GAL3), transcript variant 21, non-coding RNA"	Chr1	 44173204	 44175376	+	6487	NR_073018.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0006251	0.8803539	A	0.88174415	A	0.999036816291726	0	lncRNA	TCONS_00016266	NA	NA	NA	NA	XLOC_007641	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007641), lincRNA [TCONS_00016266]"	chr9:7785285-7785226	hs|9p24.1	Agilent_HUMAN_G3V2	TCONS_00016266	TCONS_00016266	chr9	  7785226	  7785285	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52179_PI429285431	2.0835037	A	2.753663	A	0.628437292423445	0	lncRNA	55698-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00017652 range=chr22:24647047-24658668 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017652 range=chr22:24647047-24658668 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 24650047	 24653046	+	NA	NA	NA	NA	SPECC1L	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0,hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40chr22:24653368-24668668"	NA	inter
CUST_17992_PI429285431	1.2867823	A	0.9068056	A	1.30132083851214	0	lncRNA	19726-1_{1..383}	lnc-DROSHA-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DROSHA-7:3	chr5	 29395961	 29396343	-	lnc-DROSHA-7	lnc-DROSHA-7:3	XLOC_004765	linc-CDH9-6	NA	NA	NA	inter
LNCA_21_P0003997	0.88052464	A	0.8815891	A	0.999262444679921	0	lncRNA	ENST00000510987	NA	NA	NA	NA	XLOC_004376	NA	ENST00000510987	NA	NA	"BROAD Institute lincRNA (XLOC_004376), lincRNA [TCONS_00009396]"	chr5:45896001-45896060	hs|5p12	Agilent_HUMAN_G3V2	ENST00000510987	ENST00000510987	chr5	 45896001	 45896060	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_993_PI429285431	0.87865347	A	0.87960964	A	0.999337453041594	0	lncRNA	982-1_{1..437}	"transcript_id ""ENST00000424257.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424257.1"" | genecode_v17"	chr2	105197279	105197715	-	ENSG00000231626.1	ENST00000424257.1	AC013402.4	AC013402.4-001	NA	NA	NA	inter
CUST_25898_PI429285431	4.8562403	P	4.9824276	P	0.916249683494139	0	lncRNA	27417-1_{1..489}	lnc-TMED5-1:23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMED5-1:23	chr1	 93792419	 93792907	-	lnc-TMED5-1	lnc-TMED5-1:23	ENSG00000223745.1	RP4-717I23.3	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0,hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20"	NA	inter
CUST_22934_PI429285431	1.0254568	A	1.7713604	A	0.596294278853073	0	lncRNA	24509-2_{3001..3930}	lnc-ZNF37A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-ZNF37A-3:1	chr10	 38739592	 38740521	+	lnc-ZNF37A-3	lnc-ZNF37A-3:1	ENSG00000225119.2	RP11-291L22.3	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10"	NA	inter
CUST_31826_PI429285431	1.2638168	A	0.87999433	A	1.30479437709576	0	lncRNA	33562-1_{1..1949}	n338373|BC043291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|768|NULL|-1.1380000|-0.2828551	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338373|BC043291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|768|NULL|-1.1380000|-0.2828551	chr1	175526123	175528071	+	NA	NA	NA	NA	TNR	NA	chr1:175516123-175547384	inner
CUST_13821_PI429285431	4.503154	P	2.5023508	P	4.0022275632863	0	lncRNA	15464-1_{1..2143}	lnc-RP11-597K23.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-597K23.2.1-2:1	chr15	 82391746	 82393888	+	lnc-RP11-597K23.2.1-2	lnc-RP11-597K23.2.1-2:1	XLOC_011331	linc-FAM154B-1	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80"	NA	inter
CUST_13445_PI429285431	4.0692487	P	4.455989	P	0.764855808491018	0	lncRNA	15084-1_{1..3000}	lnc-C14orf166-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf166-1:1	chr14	 52538947	 52541946	+	lnc-C14orf166-1	lnc-C14orf166-1:1	XLOC_010829	linc-PTGDR	NID2	NA	chr14:52528947-52535946	inter
CUST_42437_PI429285431	1.7832123	A	2.1394782	A	0.781183888591851	0	lncRNA	45162-1_{1..127}	ENST00000459070 ncrna:snoRNA chromosome:GRCh37:X:80112575:80112701:-1 gene:ENSG00000239008 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459070 ncrna:snoRNA chromosome:GRCh37:X:80112575:80112701:-1 gene:ENSG00000239008 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	 80112575	 80112701	-	ENSG00000239008	ENST00000459070	NA	NA	NA	NA	NA	inter
CUST_10368_PI429285431	0.8927603	A	0.92202294	A	0.979921006271512	0	lncRNA	11893-1_{1..510}	lnc-ABCD3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABCD3-2:2	chr1	 94800068	 94800577	+	lnc-ABCD3-2	lnc-ABCD3-2:2	XLOC_000301	linc-ABCD3-1	NA	NA	NA	inter
CUST_6562_PI429285431	0.90395355	A	0.9159883	A	0.991692843679437	0	lncRNA	6511-1_{1..487}	"transcript_id ""ENST00000595566.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595566.1"" | genecode_v17"	chr19	 51774520	 51775006	+	ENSG00000268318.1	ENST00000595566.1	CTD-3187F8.11	CTD-3187F8.11-001	IGLON5	NA	chr19:51784089-51791888	inter
LNCA_21_P0014200	5.218317	P	5.677714	P	0.727290178980901	0	lncRNA	XR_108812	XR_108812	XR_108812	NA	Hs.292860	LOC100127891	uncharacterized LOC100127891	NA	THC2607964	NA	"PREDICTED: Homo sapiens hypothetical LOC100127891 (LOC100127891), miscRNA [XR_108812]"	chr7:129251109-129251050	hs|7q32.2	Agilent_HUMAN_G3V2	XR_108812	XR_108812	chr7	129251050	129251109	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4470_PI429285431	1.2186307	A	0.8837979	A	1.26123123096547	0	lncRNA	4419-1_{1..643}	"transcript_id ""ENST00000545642.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000545642.1"" | genecode_v17"	chr12	126580538	126581180	+	ENSG00000256342.1	ENST00000545642.1	RP3-446N13.1	RP3-446N13.1-001	NA	NA	NA	inter
CUST_10423_PI429285431	1.1829344	A	0.89046127	A	1.22473797780583	0	lncRNA	11951-1_{1..364}	lnc-TMEM132B-12:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132B-12:2	chr12	127373115	127373478	+	lnc-TMEM132B-12	lnc-TMEM132B-12:2	XLOC_009941	linc-TMEM132C-8	NA	NA	NA	inter
CUST_43621_PI429285431	6.946834	P	6.9926224	P	0.968760266820626	0	lncRNA	48382-1_{1..2979}	"gi|375298682|ref|NR_046328.1| Homo sapiens tripartite motif containing 46 (TRIM46), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375298682|ref|NR_046328.1| Homo sapiens tripartite motif containing 46 (TRIM46), transcript variant 6, non-coding RNA"	Chr1	155146263	155149241	+	80128	NR_046328.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0005519	4.3085823	P	4.4313684	P	0.918412319858301	0	lncRNA	TCONS_00013900	NA	NA	NA	NA	XLOC_006532	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006532), lincRNA [TCONS_00013900]"	chr7:98283555-98283496	hs|7q22.1	Agilent_HUMAN_G3V2	TCONS_00013900	TCONS_00013900	chr7	 98283496	 98283555	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25369_PI429285431	0.91736734	A	0.9028838	A	1.01008978699369	0	lncRNA	26900-1_{1..472}	lnc-RP11-90J19.1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-90J19.1.1-4:1	chr15	 47898455	 47898926	-	lnc-RP11-90J19.1.1-4	lnc-RP11-90J19.1.1-4:1	ENSG00000259588.1	RP11-552E10.1	SEMA6D	NA	chr15:47888455-47908549	inner
CUST_28873_PI429285431	0.88901347	A	0.8873845	A	1.00112975365413	0	lncRNA	30587-1_{1..299}	n326294|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098604|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098604|-1.2530800|-0.4043490	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326294|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098604|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098604|-1.2530800|-0.4043490	chr1	189456911	189457209	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10697_PI429285431	0.8983817	A	0.8835482	A	1.01033483801912	0	lncRNA	12232-1_{1..558}	lnc-NOC4L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOC4L-2:1	chr12	132675273	132675830	+	lnc-NOC4L-2	lnc-NOC4L-2:1	XLOC_009962	linc-FBRSL1-2	GALNT9	NA	chr12:132680917-132685482	inter
CUST_48291_PI429285431	2.8469777	A	3.1665149	P	0.80132689282776	0	lncRNA	52149-1_{1..910}	hg19_lincRNAsTranscripts_TCONS_l2_00000115 range=chr1:16971916-16973596 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000115 range=chr1:16971916-16973596 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16971916	 16972825	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11422_PI429285431	1.3098334	A	1.0474075	A	1.19949396580243	0	lncRNA	12990-1_{1..386}	lnc-AL445989.1-11:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL445989.1-11:1	chr13	 66628093	 66628478	+	lnc-AL445989.1-11	lnc-AL445989.1-11:1	XLOC_010416	linc-C13orf34-9	NA	NA	NA	inter
CUST_45856_PI429285431	3.1938214	A	3.1732132	A	1.01438702694732	0	lncRNA	50186-1_{1..3000}	"gi|379030613|ref|NR_046410.1| Homo sapiens polymerase (DNA-directed), delta 3, accessory subunit (POLD3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379030613|ref|NR_046410.1| Homo sapiens polymerase (DNA-directed), delta 3, accessory subunit (POLD3), transcript variant 3, non-coding RNA"	Chr11	 74303650	 74306649	+	10714	NR_046410.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008378	0.885598	A	0.88769364	A	0.998548467536323	0	lncRNA	TCONS_00022613	NA	NA	NA	NA	XLOC_010915	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010915), lincRNA [TCONS_00022613]"	chr14:95796681-95796740	hs|14q32.13	Agilent_HUMAN_G3V2	TCONS_00022613	TCONS_00022613	chr14	 95796681	 95796740	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005970	0.8843782	A	0.88682234	A	0.998307285510035	0	lncRNA	TCONS_00015479	NA	NA	NA	NA	XLOC_007155	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007155), lincRNA [TCONS_00015479]"	chr8:93483989-93483930	hs|8q22.1	Agilent_HUMAN_G3V2	TCONS_00015479	TCONS_00015479	chr8	 93483930	 93483989	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25165_PI429285431	2.7948732	A	3.835137	P	0.486238555774567	0	lncRNA	26701-1_{1..1333}	lnc-ARID3B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ARID3B-3:2	chr15	 74773392	 74774724	+	lnc-ARID3B-3	lnc-ARID3B-3:2	ENSG00000247240.3	RP11-10O17.2	NA	NA	NA	inter
LNCA_21_P0014221	6.565763	P	6.8229823	P	0.836699048756295	0	lncRNA	XR_108905	XR_108905	XR_108905	NA	NA	LOC100507464	uncharacterized LOC100507464	ENST00000518854	THC2745907	NA	"PREDICTED: Homo sapiens hypothetical LOC100507464 (LOC100507464), miscRNA [XR_108905]"	chr8:50409381-50409322	hs|8q11.21	Agilent_HUMAN_G3V2	XR_108905	XR_108905	chr8	 50409322	 50409381	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33573_PI429285431	0.9010638	A	0.89152694	A	1.00663234485284	0	lncRNA	35138-1_{1..323}	n340325|AF009323|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2786|NULL|-1.1022100|-0.3201251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340325|AF009323|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2786|NULL|-1.1022100|-0.3201251	chr5	  8793986	  8794308	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5639_PI429285431	4.1855907	P	4.9446125	P	0.590896844588819	0	lncRNA	5567-1_{1..566}	"transcript_id ""ENST00000563397.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563397.1"" | genecode_v17"	chr16	 80099746	 80100311	+	ENSG00000260706.1	ENST00000563397.1	RP11-525K10.1	RP11-525K10.1-002	NA	NA	NA	inter
CUST_28506_PI429285431	0.9238584	A	1.1827018	A	0.835757672859887	0	lncRNA	30175-1_{1..2705}	n325851|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051014|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051014|-0.8817190|-0.2764743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325851|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051014|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051014|-0.8817190|-0.2764743	chr10	131471106	131473810	+	NA	NA	NA	NA	MGMT	NA	chr10:131461106-131484801	inner
LNCA_21_P0009761	0.90498495	A	0.92760974	A	0.984440017722722	0	lncRNA	TCONS_00027297	NA	NA	NA	NA	XLOC_013297	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013297), lincRNA [TCONS_00027297]"	chr19:32457864-32457805	hs|19q13.11	Agilent_HUMAN_G3V2	TCONS_00027297	TCONS_00027297	chr19	 32457805	 32457864	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00316808	3.0652692	P	3.3704505	P	0.809340502291027	0	lncRNA	AK124820	NA	AK124820	NA	Hs.708523	LOC100129936	uncharacterized LOC100129936	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014327), lincRNA [TCONS_00029347]"	chr22:27064323-27064264	hs|22q12.1	Agilent_HUMAN_G3V2	AK124820	AK124820	chr22	 27064264	 27064323	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42169_PI429285431	8.061165	P	8.250077	P	0.877267057717378	0	lncRNA	44217-1_{1..71}	ENST00000579394 ncrna:miRNA chromosome:GRCh37:17:75393066:75393136:-1 gene:ENSG00000264060 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579394 ncrna:miRNA chromosome:GRCh37:17:75393066:75393136:-1 gene:ENSG00000264060 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 75393066	 75393136	-	ENSG00000264060	ENST00000579394	NA	NA	9-Sep	NA	chr17:75383066-75403136	inner
CUST_37999_PI429285431	0.9105332	A	1.0192213	A	0.927431028493892	0	lncRNA	39086-1_{1..1556}	n346559|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2109|NULL|-1.2830100|-0.2619051	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n346559|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2109|NULL|-1.2830100|-0.2619051	chr6	 82554489	 82556044	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43721_PI429285431	5.646105	P	6.547957	P	0.53519925023123	0	lncRNA	48466-1_{1..817}	"gi|210147584|ref|NR_024337.1| Homo sapiens SERTAD4 antisense RNA 1 (SERTAD4-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|210147584|ref|NR_024337.1| Homo sapiens SERTAD4 antisense RNA 1 (SERTAD4-AS1), non-coding RNA"	Chr1	210404804	210405620	-	574036	NR_024337.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008925	7.238612	P	7.1562943	P	1.05871751241701	0	lncRNA	TCONS_00024377	NA	NA	NA	NA	XLOC_011701	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011701), lincRNA [TCONS_00024377]"	chr16:34685495-34686217	hs|16p11.1	Agilent_HUMAN_G3V2	TCONS_00024377	TCONS_00024377	chr16	 34685495	 34686217	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31190_PI429285431	5.628935	P	5.584321	P	1.03140718442612	0	lncRNA	32984-1_{1..1660}	n337630|BC037548|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|9|NULL|0.0893627|-0.1951857	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n337630|BC037548|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|9|NULL|0.0893627|-0.1951857	chrX	 12920935	 12922594	-	NA	NA	NA	NA	TLR8	NA	chrX:12924739-12941288	inner
CUST_38485_PI429285431	0.8879907	A	0.8984166	A	0.992799366496448	0	lncRNA	39502-2_{3001..3608}	n382992|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ehh.2||1.6731400|-0.3807325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n382992|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ehh.2||1.6731400|-0.3807325	chr16	 53403850	 53404457	-	NA	NA	NA	NA	LOC643802	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr16:53403274-53405041"	NA	inner
LNCA_19_P00316219	5.593593	P	6.0368447	P	0.735475046973022	0	lncRNA	XR_108543	XR_108543	XR_108543	NA	NA	LOC100507376	NA	NA	THC2666657	NA	"PREDICTED: Homo sapiens hypothetical LOC100507376, transcript variant 1 (LOC100507376), miscRNA [XR_108543]"	chr4:6675591-6675532	hs|4p16.1	Agilent_HUMAN_G3V2	XR_108543	XR_108543	chr4	  6675532	  6675591	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6443_PI429285431	2.2718458	A	2.7736876	A	0.706204637440463	0	lncRNA	6384-1_{1..446}	"transcript_id ""ENST00000591132.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591132.1"" | genecode_v17"	chr19	 31912903	 31913348	+	ENSG00000267636.1	ENST00000591132.1	AC008992.1	AC008992.1-001	NA	NA	NA	inter
CUST_49330_PI429285431	2.9884887	A	2.666254	A	1.25026568131734	0	lncRNA	53144-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00022345 range=chr5:67088978-67107273 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022345 range=chr5:67088978-67107273 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 67091978	 67094977	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29378_PI429285431	6.542811	P	8.089523	P	0.342289276425085	0	lncRNA	31130-1_{1..379}	n332648|AB038672|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059239|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059239|0.6047470|-0.3837442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332648|AB038672|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059239|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059239|0.6047470|-0.3837442	chr11	 27679971	 27680349	-	NA	NA	NA	NA	BDNF	NA	chr11:27676440-27733062	inter
CUST_2074_PI429285431	0.8973022	A	0.90685487	A	0.993400466929469	0	lncRNA	2065-1_{1..427}	"transcript_id ""ENST00000569381.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569381.1"" | genecode_v17"	chr5	  8785154	  8785580	-	ENSG00000260981.1	ENST00000569381.1	RP11-315A16.1	RP11-315A16.1-001	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00"	NA	inter
CUST_42738_PI429285431	9.433842	P	9.643653	P	0.864650497268782	0	lncRNA	45689-1_{1..129}	ENST00000408532 ncrna:snoRNA chromosome:GRCh37:X:47248048:47248176:1 gene:ENSG00000221459 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408532 ncrna:snoRNA chromosome:GRCh37:X:47248048:47248176:1 gene:ENSG00000221459 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	 47248048	 47248176	+	ENSG00000221459	ENST00000408532	NA	NA	ZNF157	NA	chrX:47238048-47258176	inner
CUST_46187_PI429285431	0.8988372	A	0.90695363	A	0.99438991506006	0	lncRNA	50433-1_{1..2073}	"gi|333944058|ref|NR_038287.1| Homo sapiens TEX26 antisense RNA 1 (TEX26-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333944058|ref|NR_038287.1| Homo sapiens TEX26 antisense RNA 1 (TEX26-AS1), transcript variant 1, non-coding RNA"	Chr13	 31456972	 31459044	-	100507064	NR_038287.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0009516	0.8961805	A	0.90882224	A	0.99127569313123	0	lncRNA	TCONS_00026396	NA	NA	NA	NA	XLOC_012747	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012747), lincRNA [TCONS_00026396]"	chr18:3462323-3462264	hs|18p11.31	Agilent_HUMAN_G3V2	TCONS_00026396	TCONS_00026396	chr18	  3462264	  3462323	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20831_PI429285431	2.1386466	A	2.7425814	A	0.65795699702224	0	lncRNA	22462-1_{1..869}	lnc-GPER-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPER-2:1	chr7	  1117400	  1118268	+	lnc-GPER-2	lnc-GPER-2:1	ENSG00000224079.1	AC091729.7	C7orf50	NA	chr7:1107400-1127672	inner
CUST_43188_PI429285431	0.8853024	A	0.8923482	A	0.995128129840831	0	lncRNA	48002-1_{1..375}	ENST00000591362 havana:sense_intronic chromosome:GRCh37:18:47496091:47497327:-1 gene:ENSG00000267196 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000591362 havana:sense_intronic chromosome:GRCh37:18:47496091:47497327:-1 gene:ENSG00000267196 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr18	 47496091	 47496465	-	ENSG00000267196	ENST00000591362	NA	NA	MYO5B	NA	chr18:47486091-47507327	inner
LNCA_21_P0008137	0.8911531	A	1.6662529	A	0.584348199959576	0	lncRNA	TCONS_00021956	NA	NA	NA	NA	XLOC_010556	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010556), lincRNA [TCONS_00021956]"	chr13:30941168-30941109	hs|13q12.3	Agilent_HUMAN_G3V2	TCONS_00021956	TCONS_00021956	chr13	 30941109	 30941168	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18357_PI429285431	0.909246	A	0.9204024	A	0.992296795726319	0	lncRNA	20085-1_{1..2006}	lnc-NAP1L3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NAP1L3-1:1	chrX	 91358446	 91360451	-	lnc-NAP1L3-1	lnc-NAP1L3-1:1	ENSG00000255955	AL136362.1	PCDH11X	NA	chrX:91348446-91370178	inner
CUST_11896_PI429285431	0.89850926	A	0.91448164	A	0.988989850138524	0	lncRNA	13478-1_{1..1361}	lnc-TSHB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSHB-2:1	chr1	115764419	115765779	+	lnc-TSHB-2	lnc-TSHB-2:1	XLOC_000358	linc-VANGL1-1	NA	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20"	NA	inter
CUST_22453_PI429285431	0.8834412	A	1.1222154	A	0.847465063555608	0	lncRNA	24040-1_{1..553}	lnc-UHRF2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UHRF2-2:1	chr9	  6978625	  6979177	+	lnc-UHRF2-2	lnc-UHRF2-2:1	ENSG00000224972.1	RP11-403H13.1	KDM4C	NA	chr9:6968625-6988859	inner
CUST_46080_PI429285431	1.3116806	A	1.8594985	A	0.68405398923441	0	lncRNA	50351-1_{1..464}	"gi|341915622|ref|XR_110368.2| PREDICTED: Homo sapiens uncharacterized LOC100506869, transcript variant 2 (LOC100506869), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|341915622|ref|XR_110368.2| PREDICTED: Homo sapiens uncharacterized LOC100506869, transcript variant 2 (LOC100506869), misc_RNA"	Chr12	 59196608	 59197071	+	100506869	XR_110368.3	NA	NA	NA	NA	NA	inter
LNCA_21_P0009205	0.88701975	A	0.9229771	A	0.975384296121336	0	lncRNA	TCONS_00025256	NA	NA	NA	NA	XLOC_012590	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012590), lincRNA [TCONS_00025256]"	chr17:80172162-80172103	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_00025256	TCONS_00025256	chr17	 80172103	 80172162	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8819_PI429285431	3.5740113	P	3.8563795	P	0.822240192427559	0	lncRNA	10358-1_{1..2796}	lnc-GPR183-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR183-2:3	chr13	100148952	100151747	-	lnc-GPR183-2	lnc-GPR183-2:3	ENSG00000233552	XLOC_010706	TM9SF2	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90chr13:100153728-100158992"	NA	inter
CUST_26775_PI429285431	0.8802831	A	0.88438743	A	0.997159138139177	0	lncRNA	28274-1_{1..439}	n323827|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057681|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057681|-1.3988200|-0.3031804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323827|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057681|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057681|-1.3988200|-0.3031804	chrX	102039164	102039602	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009517	0.88318765	A	0.88901347	A	0.995969991659396	0	lncRNA	XR_111763	XR_111763	XR_111763	NA	NA	LOC100508177	uncharacterized LOC100508177	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100508177 (LOC100508177), miscRNA [XR_111763]"	chr18:6728946-6728887	hs|18p11.31	Agilent_HUMAN_G3V2	XR_111763	XR_111763	chr18	  6728887	  6728946	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35910_PI429285431	1.3144872	A	1.6045396	A	0.817872352148359	0	lncRNA	37281-3_{6001..9000}	n344556|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_104|NULL|-1.4892000|-0.2648711	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344556|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_104|NULL|-1.4892000|-0.2648711	chr6	 21672103	 21675102	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50"	NA	inter
CUST_812_PI429285431	2.4329982	A	2.6817951	A	0.841597952584636	0	lncRNA	805-1_{1..506}	"transcript_id ""ENST00000440785.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440785.1"" | genecode_v17"	chr2	 23253475	 23253980	-	ENSG00000232451.1	ENST00000440785.1	AC016768.1	AC016768.1-003	NA	NA	NA	inter
CUST_22239_PI429285431	0.90320677	A	0.8962457	A	1.00483670532349	0	lncRNA	23840-1_{1..521}	lnc-RP11-794P6.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-794P6.2.1-1:1	chr11	111321972	111322492	+	lnc-RP11-794P6.2.1-1	lnc-RP11-794P6.2.1-1:1	ENSG00000255208.1	RP11-794P6.3	NA	NA	NA	inter
CUST_47209_PI429285431	3.0273595	A	1.4170587	A	3.05315493031093	0	lncRNA	51284-1_{1..754}	"gi|310124478|ref|XR_109638.1| PREDICTED: Homo sapiens uncharacterized LOC100507459 (LOC100507459), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310124478|ref|XR_109638.1| PREDICTED: Homo sapiens uncharacterized LOC100507459 (LOC100507459), misc_RNA"	Chr20	   300333	   301086	-	100507459	XR_109638.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0014190	4.163962	P	3.9742122	P	1.14056589559069	0	lncRNA	XR_108779	XR_108779	XR_108779	NA	Hs.288853	LOC100288594	uncharacterized LOC100288594	NA	THC2492792	NA	"PREDICTED: Homo sapiens hypothetical LOC100288594 (LOC100288594), miscRNA [XR_108779]"	chr7:2486256-2486315	hs|7p22.3	Agilent_HUMAN_G3V2	XR_108779	XR_108779	chr7	  2486256	  2486315	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34751_PI429285431	0.8926917	A	0.89339536	A	0.999512378980719	0	lncRNA	36194-1_{1..1739}	n341658|BC072424|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4129|NULL|-0.4323190|-0.3724859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341658|BC072424|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4129|NULL|-0.4323190|-0.3724859	chr9	 17435731	 17437469	+	NA	NA	NA	NA	SH3GL2	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20chr9:17447000-17447445"	NA	inner
CUST_27707_PI429285431	0.88778174	A	0.8979155	A	0.993000424770233	0	lncRNA	29286-1_{1..540}	n324918|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080060|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080060|-1.2340700|-0.3906457	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324918|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080060|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080060|-1.2340700|-0.3906457	chr20	 60875924	 60876463	-	NA	NA	NA	NA	OSBPL2	NA	chr20:60865924-60871269	inter
LNCA_21_P0005397	0.8803757	A	0.88280934	A	0.998314551262218	0	lncRNA	TCONS_00013523	NA	NA	NA	NA	XLOC_006163	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006163), lincRNA [TCONS_00013523]"	chr7:89126136-89126195	hs|7q21.13	Agilent_HUMAN_G3V2	TCONS_00013523	TCONS_00013523	chr7	 89126136	 89126195	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6444_PI429285431	1.2140479	A	1.1620576	A	1.03669413075463	0	lncRNA	6385-1_{1..293}	"transcript_id ""ENST00000587779.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587779.1"" | genecode_v17"	chr19	 31956559	 31956851	+	ENSG00000267599.1	ENST00000587779.1	CTD-2050I18.2	CTD-2050I18.2-001	NA	NA	NA	inter
LNCA_19_P00315627	4.699427	P	4.8291783	P	0.913988995285975	0	lncRNA	BC090887	NA	BC090887	NA	NA	XLOC_l2_015098	NA	NA	THC2515895	NA	"BROAD Institute lincRNA (XLOC_l2_015098), lincRNA [TCONS_l2_00029171]"	chr9:2493139-2493080	hs|9p24.2	Agilent_HUMAN_G3V2	BC090887	BC090887	chr9	  2493080	  2493139	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42870_PI429285431	4.6365013	P	4.8826413	P	0.843149286562958	0	lncRNA	45932-1_{1..72}	ENST00000459174 ncrna:snoRNA chromosome:GRCh37:17:27049600:27049671:1 gene:ENSG00000238578 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459174 ncrna:snoRNA chromosome:GRCh37:17:27049600:27049671:1 gene:ENSG00000238578 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 27049600	 27049671	+	ENSG00000238578	ENST00000459174	NA	NA	RPL23A	NA	chr17:27047000-27051374	inner
CUST_22757_PI429285431	1.3326966	A	0.8769318	A	1.37150967558665	0	lncRNA	24340-1_{1..730}	lnc-OSGIN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OSGIN1-1:1	chr16	 83984733	 83985462	+	lnc-OSGIN1-1	lnc-OSGIN1-1:1	ENSG00000260300.1	RP11-505K9.4	OSGIN1	NA	chr16:83982672-83995058	inter
CUST_33480_PI429285431	0.9105229	A	0.8970356	A	1.00939251940908	0	lncRNA	35053-1_{1..2223}	n340215|BC033378|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2676|NULL|-1.0934500|-0.2738756	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340215|BC033378|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2676|NULL|-1.0934500|-0.2738756	chr4	124695418	124697640	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46853_PI429285431	3.7078576	P	3.8937738	P	0.879090622052609	0	lncRNA	50985-1_{1..3000}	"gi|239835750|ref|NR_027782.1| Homo sapiens pleckstrin homology domain containing, family M (with RUN domain) member 1 (PLEKHM1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239835750|ref|NR_027782.1| Homo sapiens pleckstrin homology domain containing, family M (with RUN domain) member 1 (PLEKHM1), transcript variant 3, non-coding RNA"	Chr17	 43513266	 43516265	-	9842	NR_027782.1	NA	NA	NA	NA	NA	inter
CUST_44288_PI429285431	1.2910076	A	1.0418887	A	1.18848104992395	0	lncRNA	48921-1_{1..1752}	"gi|228480224|ref|NR_024409.2| Homo sapiens four and a half LIM domains 1 pseudogene (LOC100128164), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|228480224|ref|NR_024409.2| Homo sapiens four and a half LIM domains 1 pseudogene (LOC100128164), transcript variant 2, non-coding RNA"	Chr3	169672015	169673766	-	100128164	NR_024409.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0014071	3.134492	P	1.6790626	A	2.74238172386464	0	lncRNA	XR_108345	XR_108345	XR_108345	NA	Hs.594273	LOC100132909	uncharacterized LOC100132909	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100132909 (LOC100132909), miscRNA [XR_108345]"	chr1:149816206-149816147	hs|1q21.2	Agilent_HUMAN_G3V2	XR_108345	XR_108345	chr1	149816147	149816206	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22556_PI429285431	2.6160285	A	0.88672376	A	3.31567991396775	0	lncRNA	24143-1_{1..659}	lnc-FGF10-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FGF10-3:4	chr5	 44808744	 44809402	-	lnc-FGF10-3	lnc-FGF10-3:4	ENSG00000251141.1	RP11-53O19.1	MRPS30	NA	chr5:44809027-44815616	inter
CUST_13711_PI429285431	2.118634	A	1.7427183	A	1.29766293928415	0	lncRNA	15349-1_{1..378}	lnc-CTSO-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTSO-1:4	chr4	157064904	157065281	-	lnc-CTSO-1	lnc-CTSO-1:4	XLOC_004134	linc-CTSO-1	NA	NA	NA	inter
CUST_34019_PI429285431	1.7236784	A	2.557984	A	0.560852924574269	0	lncRNA	35552-2_{3001..5657}	n340834|BX648926|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3298|NULL|0.0914702|-0.1962872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340834|BX648926|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3298|NULL|0.0914702|-0.1962872	chr17	 72299760	 72302416	-	NA	NA	NA	NA	DNAI2	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.24;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_DNAI2:range=chr17:72277957-723103555'pad=0,hg19_refFlat_DNAI2:range=chr17:72277957-723103555'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60chr17:72286760-72311023"	NA	inner
CUST_26089_PI429285431	1.5914944	A	0.92344105	A	1.58892755669681	0	lncRNA	27602-1_{1..1866}	lnc-PGAM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PGAM2-1:1	chr7	 44047031	 44048896	-	lnc-PGAM2-1	lnc-PGAM2-1:1	ENSG00000228434.1	AC004951.6	SPDYE1	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SPDYE2L:range=chr7:102193703-1022016225'pad=0,hg19_refFlat_SPDYE2L:range=chr7:102193703-1022016225'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_SPDYE2:range=chr7:102292796-1023007125'pad=0,hg19_refFlat_SPDYE2:range=chr7:102292796-1023007125'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_SPDYE6:range=chr7:101988542-1019964685'pad=0,hg19_refFlat_SPDYE6:range=chr7:101988542-1019964685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SPDYE3:range=chr7:99905509-999176135'pad=0,hg19_refFlat_SPDYE3:range=chr7:99905509-999176135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_SPDYE5:range=chr7:75124435-751312615'pad=0,hg19_refFlat_SPDYE5:range=chr7:75124435-751312615'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.90;hg19_refFlat_SPDYE1:range=chr7:44040625-440473675'pad=0,hg19_refFlat_SPDYE1:range=chr7:44040625-440473675'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.90;hg19_refFlat_SPDYE2:range=chr7:102193703-1022016225'pad=0,hg19_refFlat_SPDYE2:range=chr7:102193703-1022016225'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SPDYE2L:range=chr7:102292796-1023007125'pad=0,hg19_refFlat_SPDYE2L:range=chr7:102292796-1023007125'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SPDYE4:range=chr17:8656456-86617005'pad=0,hg19_refFlat_SPDYE4:range=chr17:8656456-86617005'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50chr7:44040489-44049723"	NA	inter
LNCA_21_P0012675	0.88331825	A	0.8837013	A	0.999734525217154	0	lncRNA	TCONS_l2_00021247	NA	NA	NA	NA	XLOC_l2_011225	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011225), lincRNA [TCONS_l2_00021247]"	chr4:113614109-113614050	hs|4q25	Agilent_HUMAN_G3V2	TCONS_l2_00021247	TCONS_l2_00021247	chr4	113614050	113614109	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14132_PI429285431	0.8901756	A	0.8963603	A	0.995722268303347	0	lncRNA	15782-1_{1..640}	lnc-PET112-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PET112-2:3	chr4	152831150	152831789	-	lnc-PET112-2	lnc-PET112-2:3	XLOC_004124	linc-PET112L-3	NA	NA	NA	inter
CUST_24094_PI429285431	0.890401	A	0.90350115	A	0.990960769677722	0	lncRNA	25645-1_{1..792}	lnc-RP11-553A10.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-553A10.1.1-1:1	chr3	110790339	110791130	-	lnc-RP11-553A10.1.1-1	lnc-RP11-553A10.1.1-1:1	ENSG00000242242.1	PVRL3-AS1	PVRL3	NA	chr3:110790865-110800400	inter
CUST_44061_PI429285431	0.8878021	A	0.8953951	A	0.994750759126948	0	lncRNA	48734-1_{1..2153}	"gi|84871989|ref|NR_002712.1| Homo sapiens chemokine (C-X-C motif) receptor 2 pseudogene 1 (CXCR2P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|84871989|ref|NR_002712.1| Homo sapiens chemokine (C-X-C motif) receptor 2 pseudogene 1 (CXCR2P1), non-coding RNA"	Chr2	218923878	218926030	-	3580	NR_002712.1	NA	NA	NA	NA	NA	inter
CUST_10882_PI429285431	3.458047	P	4.5908575	P	0.456026478538261	0	lncRNA	12423-1_{1..306}	lnc-TOMM20-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TOMM20-2:2	chr1	235104135	235104440	-	lnc-TOMM20-2	lnc-TOMM20-2:2	XLOC_001265	linc-IRF2BP2-1	NA	NA	NA	inter
LNCA_21_P0006763	0.8856037	A	0.88669705	A	0.999242434627787	0	lncRNA	ENST00000444155	NA	NA	NA	NA	XLOC_008826	NA	ENST00000444155	THC2780320	NA	"BROAD Institute lincRNA (XLOC_008826), lincRNA [TCONS_00017983]"	chr10:54733307-54733248	hs|10q21.1	Agilent_HUMAN_G3V2	ENST00000444155	ENST00000444155	chr10	 54733248	 54733307	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36352_PI429285431	3.5489872	P	3.8047643	P	0.837535878905135	0	lncRNA	37578-1_{1..3000}	n344875|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_424|NULL|-1.4420000|-0.3394417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344875|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_424|NULL|-1.4420000|-0.3394417	chr6	111808355	111811354	+	NA	NA	NA	NA	REV3L	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr6:111798355-111804414"	NA	inter
CUST_1866_PI429285431	1.0163271	A	1.0949312	A	0.946973461170945	0	lncRNA	1856-1_{1..544}	"transcript_id ""ENST00000506100.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506100.1"" | genecode_v17"	chr4	121560245	121560788	+	ENSG00000249409.1	ENST00000506100.1	RP11-501E14.1	RP11-501E14.1-002	NA	NA	NA	inter
LNCA_21_P0004001	2.9098883	A	3.3541908	P	0.734939552101061	0	lncRNA	ENST00000445660	NA	NA	NA	NA	XLOC_004386	NA	ENST00000445660	NA	NA	"BROAD Institute lincRNA (XLOC_004386), lincRNA [TCONS_00009402]"	chr5:54359231-54359290	hs|5q11.2	Agilent_HUMAN_G3V2	ENST00000445660	ENST00000445660	chr5	 54359231	 54359290	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003305	4.6769247	P	4.987911	P	0.806090486185687	0	lncRNA	TCONS_00007316	NA	NA	NA	NA	XLOC_003347	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003347), lincRNA [TCONS_00007316]"	chr3:181875205-181875146	hs|3q26.33	Agilent_HUMAN_G3V2	TCONS_00007316	TCONS_00007316	chr3	181875146	181875205	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45352_PI429285431	2.303018	A	2.4127898	A	0.926734637648645	0	lncRNA	49789-1_{1..2225}	"gi|383276550|ref|NR_047527.1| Homo sapiens fibroblast growth factor 7 pseudogene (KGFLP1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|383276550|ref|NR_047527.1| Homo sapiens fibroblast growth factor 7 pseudogene (KGFLP1), transcript variant 1, non-coding RNA"	Chr9	 46687557	 46689781	+	387628	NR_047527.1	NA	NA	NA	NA	NA	inter
CUST_34831_PI429285431	0.8876574	A	0.8976532	A	0.99309538655015	0	lncRNA	36261-1_{1..3000}	n341736|AK126790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4209|NULL|-0.8356590|-0.2560776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341736|AK126790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4209|NULL|-0.8356590|-0.2560776	chr9	101254668	101257667	-	NA	NA	NA	NA	GABBR2	NA	chr9:101244668-101268646	inner
CUST_19830_PI429285431	7.318374	P	7.4462857	P	0.915155178391417	0	lncRNA	21487-1_{1..979}	lnc-SRGAP3-1:20	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRGAP3-1:20	chr3	  9433111	  9434089	-	lnc-SRGAP3-1	lnc-SRGAP3-1:20	ENSG00000206573.4	RP11-58B17.1	LOC100652926	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60chr3:9435634-9438752"	NA	inter
CUST_1086_PI429285431	4.086863	P	4.4187174	P	0.794514580232857	0	lncRNA	1075-1_{1..464}	"transcript_id ""ENST00000426716.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426716.1"" | genecode_v17"	chr2	144557036	144557499	+	ENSG00000236356.1	ENST00000426716.1	AC079584.2	AC079584.2-001	NA	NA	NA	inter
CUST_51746_PI429285431	0.8925528	A	1.0956815	A	0.868664689817818	0	lncRNA	55299-1_{1..747}	hg19_lincRNAsTranscripts_TCONS_l2_00012388 range=chr19:20959100-20977051 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012388 range=chr19:20959100-20977051 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 20959100	 20959846	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013324	3.7751515	P	3.7769933	P	0.998724176079077	0	lncRNA	ENST00000412091	NA	NA	NA	NA	XLOC_l2_013873	NA	ENST00000412091	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013873), lincRNA [TCONS_l2_00026656]"	chr7:65957296-65957237	hs|7q11.21	Agilent_HUMAN_G3V2	ENST00000412091	ENST00000412091	chr7	 65957237	 65957296	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9907_PI429285431	2.3911095	A	1.2290316	A	2.2377950311598	0	lncRNA	11431-1_{1..614}	lnc-HERC6-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HERC6-2:3	chr4	 89262455	 89263068	+	lnc-HERC6-2	lnc-HERC6-2:3	XLOC_003603	linc-HERC6-2	NA	NA	NA	inter
CUST_44374_PI429285431	2.723137	A	3.276861	P	0.681259335638951	0	lncRNA	48994-1_{1..1797}	"gi|224548941|ref|NR_027153.1| Homo sapiens ribosomal protein L21 pseudogene 44 (RPL21P44), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224548941|ref|NR_027153.1| Homo sapiens ribosomal protein L21 pseudogene 44 (RPL21P44), non-coding RNA"	Chr4	 54851653	 54853449	-	402176	NR_027153.1	NA	NA	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRCA1:range=chr17:41197695-412761135'pad=0,hg19_refFlat_BRCA1:range=chr17:41197695-412761135'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_30338_PI429285431	11.355238	P	10.987089	P	1.29069578524792	0	lncRNA	32114-1_{1..229}	n335261|AY603498|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255715|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255715|1.2323700|-0.0934931	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335261|AY603498|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255715|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255715|1.2323700|-0.0934931	chr15	 74631627	 74631855	-	NA	NA	NA	NA	CCDC33	NA	chr15:74621627-74628482	inner
CUST_39933_PI429285431	4.7962365	P	5.567442	P	0.585927675331968	0	lncRNA	40811-1_{1..2732}	n406840|NR_024279|lncRNA|Homosapiens||RefGeneNoncode|NR_024279||-0.2518830|-0.1586209	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n406840|NR_024279|lncRNA|Homosapiens||RefGeneNoncode|NR_024279||-0.2518830|-0.1586209	chr1	 16160709	 16163440	-	NA	NA	NA	NA	SPEN	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.11;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_SPEN:range=chr1:16174563-162659225'pad=0,hg19_refFlat_SPEN:range=chr1:16174563-162659225'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-60.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20chr1:16174359-16184642"	NA	inner
CUST_39662_PI429285431	1.2899408	A	1.3888782	A	0.93372045911338	0	lncRNA	40601-1_{1..1973}	n405282|NR_001297|lncRNA|Homosapiens||RefGeneNoncode|NR_001297||8.2828800|-0.2825982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405282|NR_001297|lncRNA|Homosapiens||RefGeneNoncode|NR_001297||8.2828800|-0.2825982	chr5	140805852	140807824	+	NA	NA	NA	NA	PCDHGA1	NA	chr5:140795852-140817825	inner
LNCA_21_P0009741	0.9062521	A	1.8518993	A	0.519196585288825	0	lncRNA	TCONS_00027200	NA	NA	NA	NA	XLOC_013240	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013240), lincRNA [TCONS_00027200]"	chr19:14431050-14430991	hs|19p13.12	Agilent_HUMAN_G3V2	TCONS_00027200	TCONS_00027200	chr19	 14430991	 14431050	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15703_PI429285431	2.2809246	A	3.6195576	A	0.395395128105403	0	lncRNA	17391-1_{1..898}	lnc-HDAC2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HDAC2-4:1	chr6	113697245	113698142	-	lnc-HDAC2-4	lnc-HDAC2-4:1	XLOC_005808	linc-LAMA4-5	NA	NA	NA	inter
CUST_51599_PI429285431	3.5563254	P	3.559955	P	0.997487315084185	0	lncRNA	55165-1_{1..675}	hg19_lincRNAsTranscripts_TCONS_l2_00011160 range=chr17:25679477-25680844 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011160 range=chr17:25679477-25680844 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 25679477	 25680151	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42557_PI429285431	9.149781	P	9.180504	P	0.978929588567374	0	lncRNA	45377-1_{1..135}	ENST00000384544 ncrna:snoRNA chromosome:GRCh37:2:215711671:215711805:1 gene:ENSG00000207274 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384544 ncrna:snoRNA chromosome:GRCh37:2:215711671:215711805:1 gene:ENSG00000207274 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	215711671	215711805	+	ENSG00000207274	ENST00000384544	NA	NA	NA	NA	NA	inter
CUST_48575_PI429285431	0.90618813	A	0.92540365	A	0.986769124316212	0	lncRNA	52423-1_{1..506}	hg19_lincRNAsTranscripts_TCONS_l2_00014399 range=chr2:6869255-6870802 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014399 range=chr2:6869255-6870802 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	  6869255	  6869760	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48307_PI429285431	0.91152185	A	0.9160399	A	0.996873224955786	0	lncRNA	52165-1_{1..996}	hg19_lincRNAsTranscripts_TCONS_l2_00000135 range=chr1:16974873-16976823 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000135 range=chr1:16974873-16976823 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16974873	 16975868	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21505_PI429285431	3.7963557	P	2.906284	P	1.85326822642625	0	lncRNA	23123-1_{1..481}	lnc-SLC6A7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC6A7-1:1	chr5	149563575	149564055	+	lnc-SLC6A7-1	lnc-SLC6A7-1:1	ENSG00000257938.1	AC005895.4	CDX1	NA	chr5:149553575-149564121	inner
CUST_47223_PI429285431	0.90249586	A	0.90200365	A	1.0003412321802	0	lncRNA	51298-1_{1..1558}	"gi|393290878|ref|NR_072977.1| Homo sapiens McKusick-Kaufman syndrome (MKKS), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393290878|ref|NR_072977.1| Homo sapiens McKusick-Kaufman syndrome (MKKS), transcript variant 3, non-coding RNA"	Chr20	 10385428	 10386985	-	8195	NR_072977.1	NA	NA	NA	NA	NA	inter
CUST_27602_PI429285431	4.8565407	P	5.1465073	P	0.817920994122266	0	lncRNA	29181-1_{1..745}	n324805|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194071|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194071|-1.2156000|-0.3466522	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324805|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194071|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194071|-1.2156000|-0.3466522	chr21	 34482518	 34483262	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19254_PI429285431	2.804991	A	2.5246577	A	1.21447542733321	0	lncRNA	20923-1_{1..505}	lnc-SLC45A4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC45A4-2:1	chr8	142139737	142140241	-	lnc-SLC45A4-2	lnc-SLC45A4-2:1	ENSG00000253210.1	RP11-809O17.1	DENND3	NA	chr8:142138720-142150060	inner
CUST_24519_PI429285431	5.2817874	P	5.334726	P	0.963970832730663	0	lncRNA	26070-1_{1..429}	lnc-TPP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TPP1-1:1	chr11	  6631139	  6631567	-	lnc-TPP1-1	lnc-TPP1-1:1	ENSG00000254641.1	RP11-732A19.2	TPP1	"hg19_refFlat_ILK:range=chr11:6625502-66318425'pad=0,hg19_refFlat_ILK:range=chr11:6625502-66318425'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10chr11:6633997-6640692"	NA	inner
LNCA_32_P133395	0.92691344	A	0.9145996	A	1.00857183303692	0	lncRNA	ENST00000442411	XR_110544	XR_110544	NA	Hs.720489	NA	NA	ENST00000442411	THC2601510	NA	"PREDICTED: Homo sapiens hypothetical LOC100507500 (LOC100507500), miscRNA [XR_110544]"	chr7:55249544-55249485	hs|7p11.2	Agilent_HUMAN_G3V2	ENST00000442411	ENST00000442411	chr7	 55249485	 55249544	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32322_PI429285431	0.9248772	A	0.97100985	A	0.968529132778522	0	lncRNA	34004-2_{3001..3694}	n338900|BC041870|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1326|NULL|-0.4746090|-0.4221405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338900|BC041870|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1326|NULL|-0.4746090|-0.4221405	chr2	 86667162	 86667855	-	NA	NA	NA	NA	KDM3A	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50chr2:86668271-86677836"	NA	inter
CUST_31041_PI429285431	6.6551967	P	7.0471983	P	0.762071570005	0	lncRNA	32830-1_{1..561}	n337258|BC127792|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389415|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389415|3.0175900|-0.0322518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337258|BC127792|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389415|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389415|3.0175900|-0.0322518	chr11	 67172849	 67173409	+	NA	NA	NA	NA	TBC1D10C	NA	chr11:67171412-67177560	inter
CUST_31353_PI429285431	0.8861943	A	1.11394	A	0.853968227823284	0	lncRNA	33135-1_{1..2933}	n337821|M90464|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|204|NULL|5.5056800|-0.1996094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337821|M90464|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|204|NULL|5.5056800|-0.1996094	chrX	107683153	107686085	+	NA	NA	NA	NA	COL4A5	NA	chrX:107683154-107875086	inner
LNCA_21_P0014365	2.2847552	A	2.602559	A	0.80229026678112	0	lncRNA	XR_109465	XR_109465	XR_109465	NA	NA	LOC100287082	uncharacterized LOC100287082	NA	THC2610103	NA	"PREDICTED: Homo sapiens hypothetical LOC100287082 (LOC100287082), miscRNA [XR_109465]"	chr18:8695924-8695865	hs|18p11.22	Agilent_HUMAN_G3V2	XR_109465	XR_109465	chr18	  8695865	  8695924	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42100_PI429285431	3.4776244	P	4.00185	P	0.695332245465842	0	lncRNA	44053-1_{1..62}	ENST00000578869 ncrna:miRNA chromosome:GRCh37:11:65416663:65416724:1 gene:ENSG00000265874 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578869 ncrna:miRNA chromosome:GRCh37:11:65416663:65416724:1 gene:ENSG00000265874 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 65416663	 65416724	+	ENSG00000265874	ENST00000578869	NA	NA	RELA	NA	chr11:65421067-65426724	inter
CUST_51401_PI429285431	2.814412	A	2.9968212	P	0.881230174008099	0	lncRNA	54982-1_{1..1556}	hg19_lincRNAsTranscripts_TCONS_l2_00009774 range=chr16:58783566-58884930 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009774 range=chr16:58783566-58884930 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 58783566	 58785121	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
LNCA_21_P0002029	0.89363205	A	0.9054592	A	0.991835555924012	0	lncRNA	ENST00000432612	NA	NA	NA	NA	XLOC_002018	NA	ENST00000432612	NA	NA	"BROAD Institute lincRNA (XLOC_002018), lincRNA [TCONS_00003231]"	chr2:23250738-23250679	hs|2p24.1	Agilent_HUMAN_G3V2	ENST00000432612	ENST00000432612	chr2	 23250679	 23250738	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11609_PI429285431	0.90686214	A	2.1514072	A	0.422040963640574	0	lncRNA	13189-1_{1..1486}	lnc-ALDH1A3-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALDH1A3-1:7	chr15	101407563	101409048	+	lnc-ALDH1A3-1	lnc-ALDH1A3-1:7	XLOC_011388	linc-ALDH1A3-1	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50"	NA	inter
CUST_9234_PI429285431	0.8818093	A	0.888694	A	0.995239258033819	0	lncRNA	10744-1_{1..1569}	lnc-ST8SIA4-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ST8SIA4-3:2	chr5	 99870865	 99872433	-	lnc-ST8SIA4-3	lnc-ST8SIA4-3:2	ENSG00000247877	CTD-2001C12.1	FAM174A	NA	chr5:99871124-99880890	inter
CUST_8203_PI429285431	0.89639294	A	0.9072492	A	0.992503255812628	0	lncRNA	9798-2_{3001..5517}	lnc-SIAH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SIAH1-1:1	chr16	 48387248	 48389764	-	lnc-SIAH1-1	lnc-SIAH1-1:1	ENSG00000247487	ENST00000501305	LONP2	"hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_LONP2:range=chr16:48278300-483857135'pad=0,hg19_refFlat_LONP2:range=chr16:48278300-483857135'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40chr16:48374248-48387407"	NA	inner
CUST_9133_PI429285431	7.0202765	P	7.1706953	P	0.900988876548444	0	lncRNA	10652-1_{1..2106}	lnc-DRGX-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DRGX-1:1	chr10	 50534758	 50536863	-	lnc-DRGX-1	lnc-DRGX-1:1	ENSG00000248534	ENST00000399384	C10orf71	"hg19_refFlat_C10orf71:range=chr10:50530591-505350615'pad=0,hg19_refFlat_C10orf71:range=chr10:50530591-505350615'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_C10orf71:range=chr10:50530591-505348985'pad=0,hg19_refFlat_C10orf71:range=chr10:50530591-505348985'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.00chr10:50524758-50535537"	NA	inner
CUST_7160_PI429285431	1.0781513	A	0.9101882	A	1.12347116749498	0	lncRNA	7185-1_{1..318}	"transcript_id ""ENST00000410137.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410137.1"" | genecode_v17"	chr1	104066184	104066501	+	ENSG00000222069.1	ENST00000410137.1	RN7SKP285	RN7SKP285-201	RNPC3	NA	chr1:104068578-104076501	inter
CUST_39347_PI429285431	7.0513597	P	7.579762	P	0.693322122576525	0	lncRNA	40314-1_{1..1198}	n386434|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010kzd.1||-1.1533900|-0.2719125	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386434|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010kzd.1||-1.1533900|-0.2719125	chr7	 54268916	 54270113	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12144_PI429285431	0.9076097	A	1.0904586	A	0.880961636406222	0	lncRNA	13743-1_{1..1043}	lnc-PGS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PGS1-1:1	chr17	 76360578	 76361620	+	lnc-PGS1-1	lnc-PGS1-1:1	XLOC_012324	linc-PGS1-1	SOCS3	NA	chr17:76352859-76356158	inter
CUST_52052_PI429285431	1.71148	A	1.8823773	A	0.888290027597044	0	lncRNA	55585-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017085 range=chr21:44851213-44859330 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017085 range=chr21:44851213-44859330 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr21	 44851213	 44854212	+	NA	NA	NA	NA	SIK1	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00chr21:44841213-44847002"	NA	inter
CUST_38396_PI429285431	5.337434	P	5.796999	P	0.727205491896831	0	lncRNA	39433-1_{1..1751}	n382320|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yvy.1||0.3363140|-0.2775044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382320|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yvy.1||0.3363140|-0.2775044	chr15	 23569671	 23571421	-	NA	NA	NA	NA	LOC440243	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-26.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-21.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30chr15:23559671-23581422"	NA	inner
CUST_40919_PI429285431	0.91351974	A	1.1247787	A	0.863783126664083	0	lncRNA	41605-1_{1..1636}	n410771|NR_038225|lncRNA|Homosapiens||RefGeneNoncode|NR_038225||1.7091200|-0.2271631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n410771|NR_038225|lncRNA|Homosapiens||RefGeneNoncode|NR_038225||1.7091200|-0.2271631	chr10	 77056140	 77057775	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42781_PI429285431	6.653767	P	6.9368925	P	0.821808695070659	0	lncRNA	45766-1_{1..78}	ENST00000577887 ncrna:snoRNA chromosome:GRCh37:2:29150849:29150926:1 gene:ENSG00000265706 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577887 ncrna:snoRNA chromosome:GRCh37:2:29150849:29150926:1 gene:ENSG00000265706 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 29150849	 29150926	+	ENSG00000265706	ENST00000577887	NA	NA	WDR43	NA	chr2:29140849-29160926	inner
CUST_3679_PI429285431	5.285627	P	5.3341174	P	0.966947589521976	0	lncRNA	3647-1_{1..350}	"transcript_id ""ENST00000602712.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602712.1"" | genecode_v17"	chr10	 46048560	 46048909	-	ENSG00000242639.2	ENST00000602712.1	RP11-358L16.2	RP11-358L16.2-002	8-Mar	NA	chr10:46038560-46090354	inner
CUST_48195_PI429285431	8.863083	P	8.996728	P	0.911525549627864	0	lncRNA	52058-1_{1..1673}	"gi|397138645|ref|XR_133553.2| PREDICTED: Homo sapiens prothymosin, alpha pseudogene (LOC441454), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|397138645|ref|XR_133553.2| PREDICTED: Homo sapiens prothymosin, alpha pseudogene (LOC441454), misc_RNA"	NA	NA	NA	NA	NA	XR_133553.2	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50"	NA	Unknown
CUST_37636_PI429285431	0.87806	A	0.87912524	A	0.999261904424029	0	lncRNA	38731-1_{1..597}	n346115|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1665|NULL|-1.2837200|-0.1682326	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346115|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1665|NULL|-1.2837200|-0.1682326	chr21	 43132883	 43133479	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45386_PI429285431	5.494954	P	5.7798376	P	0.820807830828754	0	lncRNA	49818-1_{1..2155}	"gi|410170576|ref|XR_108980.3| PREDICTED: Homo sapiens uncharacterized LOC100507319 (LOC100507319), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410170576|ref|XR_108980.3| PREDICTED: Homo sapiens uncharacterized LOC100507319 (LOC100507319), misc_RNA"	NA	NA	NA	NA	NA	XR_108980.3	NA	NA	NA	NA	NA	Unknown
CUST_7742_PI429285431	3.670353	P	3.7898064	P	0.920536352082677	0	lncRNA	9370-1_{1..2022}	lnc-LMTK3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LMTK3-1:1	chr19	 48985029	 48987050	-	lnc-LMTK3-1	lnc-LMTK3-1:1	ENSG00000246646	ENST00000500348	LMTK3	NA	chr19:48988528-48995570	inner
CUST_7102_PI429285431	3.8177292	P	3.9630754	P	0.90416238189105	0	lncRNA	7037-1_{1..696}	"transcript_id ""ENST00000423992.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423992.2"" | genecode_v17"	chrX	 73500766	 73501461	-	ENSG00000230590.3	ENST00000423992.2	FTX	FTX-005	NA	NA	NA	inter
CUST_26808_PI429285431	4.082938	P	4.6184955	P	0.689892030512569	0	lncRNA	28320-1_{1..270}	n323876|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056483|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056483|-1.1776400|-0.1236370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323876|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056483|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056483|-1.1776400|-0.1236370	chrX	 48078053	 48078322	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43826_PI429285431	3.2542584	P	3.7889402	P	0.69031091449275	0	lncRNA	48550-1_{1..2868}	"gi|359465586|ref|NR_045602.1| Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14) (GALNT14), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|359465586|ref|NR_045602.1| Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14) (GALNT14), transcript variant 4, non-coding RNA"	Chr2	 31133331	 31136198	-	79623	NR_045602.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002876	9.750002	P	10.150119	P	0.75779682478944	0	lncRNA	ENST00000503572	NA	NA	NA	NA	XLOC_003245	NA	ENST00000503572	NA	NA	"BROAD Institute lincRNA (XLOC_003245), lincRNA [TCONS_00005826]"	chr3:128719910-128719477	hs|3q21.3	Agilent_HUMAN_G3V2	ENST00000503572	ENST00000503572	chr3	128719477	128719910	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17938_PI429285431	1.4921309	A	1.2196074	A	1.20791882047545	0	lncRNA	19670-1_{1..401}	lnc-FAM153B-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM153B-3:4	chr5	175406170	175406570	+	lnc-FAM153B-3	lnc-FAM153B-3:4	XLOC_004653	linc-FAM153B	NA	NA	NA	inter
CUST_8305_PI429285431	0.8827591	A	0.8806366	A	1.00147228764357	0	lncRNA	9890-1_{1..3000}	lnc-SLC15A3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC15A3-2:1	chr11	 60785758	 60788757	-	lnc-SLC15A3-2	lnc-SLC15A3-2:1	ENSG00000251217	ENST00000505761	CD6	"hg19_refFlat_CD6:range=chr11:60739338-607867905'pad=0,hg19_refFlat_CD6:range=chr11:60739338-607867905'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70chr11:60775758-60787849"	NA	inner
LNCA_21_P0014475	0.88258594	A	0.8829288	A	0.999762375794778	0	lncRNA	XR_109999	XR_109999	XR_109999	NA	Hs.146614	LOC100506944	uncharacterized LOC100506944	NA	THC2619518	NA	"PREDICTED: Homo sapiens hypothetical LOC100506944 (LOC100506944), miscRNA [XR_109999]"	chr3:88514592-88514651	hs|3p11.1	Agilent_HUMAN_G3V2	XR_109999	XR_109999	chr3	 88514592	 88514651	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31359_PI429285431	0.9099899	A	0.9188166	A	0.993900475869027	0	lncRNA	33139-1_{1..943}	n337825|BC033962|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|208|NULL|-0.8283580|-0.2323924	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337825|BC033962|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|208|NULL|-0.8283580|-0.2323924	chr15	 61890712	 61891654	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23618_PI429285431	0.8906547	A	0.8861008	A	1.00316151000999	0	lncRNA	25185-1_{1..570}	lnc-SLC7A7-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC7A7-1:3	chr14	 23235633	 23236202	-	lnc-SLC7A7-1	lnc-SLC7A7-1:3	ENSG00000258458.1	CTD-2555K7.2	SLC7A7	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr14:23242431-23245756"	NA	inner
CUST_12063_PI429285431	0.8948688	A	0.89450455	A	1.00025251073599	0	lncRNA	13651-1_{1..382}	lnc-CCDC127-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC127-2:1	chr5	    37545	    37926	-	lnc-CCDC127-2	lnc-CCDC127-2:1	XLOC_004691	linc-TRIM52	NA	NA	NA	inter
CUST_556_PI429285431	1.51236	A	0.88898605	A	1.54047359116132	0	lncRNA	548-1_{1..641}	"transcript_id ""ENST00000453331.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453331.1"" | genecode_v17"	chr1	209701886	209702526	-	ENSG00000224260.2	ENST00000453331.1	RP1-272L16.1	RP1-272L16.1-002	NA	NA	NA	inter
CUST_11752_PI429285431	2.1087117	A	0.87901837	A	2.3451713383953	0	lncRNA	13332-1_{1..516}	lnc-ARF5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARF5-2:1	chr7	126991452	126991967	+	lnc-ARF5-2	lnc-ARF5-2:1	XLOC_006237	linc-ARF5-2	NA	NA	NA	inter
CUST_20394_PI429285431	1.4682875	A	1.799213	A	0.795026304621963	0	lncRNA	22035-1_{1..1112}	lnc-SAT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SAT2-1:1	chr17	  7588578	  7589689	-	lnc-SAT2-1	lnc-SAT2-1:1	ENSG00000262251.1	RP11-199F11.2	WRAP53	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-20.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90chr17:7589389-7599689"	NA	inner
CUST_37555_PI429285431	5.371844	P	5.285011	P	1.06203624275944	0	lncRNA	38659-1_{1..1488}	n346031|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1581|NULL|-1.3645400|-0.1281358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346031|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1581|NULL|-1.3645400|-0.1281358	chr3	 75470662	 75472149	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40154_PI429285431	8.007057	P	7.738469	P	1.2046282521822	0	lncRNA	40992-1_{1..2143}	n407829|NR_027381|lncRNA|Homosapiens||RefGeneNoncode|NR_027381||4.5242800|-0.1346640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407829|NR_027381|lncRNA|Homosapiens||RefGeneNoncode|NR_027381||4.5242800|-0.1346640	chr19	 55555691	 55557833	-	NA	NA	NA	NA	RDH13	NA	chr19:55555692-55580914	inter
CUST_159_PI429285431	5.855093	P	6.262643	P	0.753902572557922	0	lncRNA	150-1_{1..548}	"transcript_id ""ENST00000437157.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437157.1"" | genecode_v17"	chr1	  9228327	  9228874	-	ENSG00000228526.1	ENST00000437157.1	RP3-510D11.1	RP3-510D11.1-001	NA	NA	NA	inter
CUST_10155_PI429285431	6.595707	P	6.686495	P	0.939009722029269	0	lncRNA	11679-1_{1..499}	lnc-TMEM189-UBE2V1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM189-UBE2V1-3:1	chr20	 48646889	 48647387	-	lnc-TMEM189-UBE2V1-3	lnc-TMEM189-UBE2V1-3:1	XLOC_013785	linc-SPATA2-2	NA	NA	NA	inter
CUST_6708_PI429285431	0.88916063	A	0.8847748	A	1.00304465126313	0	lncRNA	6656-2_{3001..3883}	"transcript_id ""ENST00000562732.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562732.2"" | genecode_v17"	chr20	 47983414	 47984296	-	ENSG00000260124.2	ENST00000562732.2	RP4-791K14.2	RP4-791K14.2-001	KCNB1	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr20:47988505-47994296"	NA	inter
CUST_8_PI429285431	1.267672	A	1.1537896	A	1.08213643154404	0	lncRNA	7-1_{1..1450}	"transcript_id ""ENST00000523692.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000523692.1"" | genecode_v17"	chr5	  1363741	  1365190	-	ENSG00000250584.2	ENST00000523692.1	RP11-325I22.2	RP11-325I22.2-003	NA	NA	NA	inter
CUST_33016_PI429285431	7.6723404	P	6.062088	P	3.05305250379964	0	lncRNA	34632-1_{1..2880}	n339699|BC036485|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2144|NULL|-1.1767400|-0.4075087	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339699|BC036485|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2144|NULL|-1.1767400|-0.4075087	chr3	178735010	178737889	-	NA	NA	NA	NA	ZMAT3	NA	chr3:178735011-178747876	inner
CUST_600_PI429285431	0.88594174	A	0.9001678	A	0.990187704441459	0	lncRNA	592-1_{1..403}	"transcript_id ""ENST00000412647.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412647.1"" | genecode_v17"	chr1	230728406	230728808	+	ENSG00000232964.1	ENST00000412647.1	RP11-543E8.1	RP11-543E8.1-001	NA	NA	NA	inter
CUST_15613_PI429285431	3.575827	P	3.3911216	A	1.13658485759201	0	lncRNA	17300-1_{1..443}	lnc-FAM182B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM182B-2:1	chr20	 25982850	 25983292	-	lnc-FAM182B-2	lnc-FAM182B-2:1	XLOC_013711	linc-ZNF337-8	NA	NA	NA	inter
LNCA_21_P0005766	0.9010419	A	0.92546403	A	0.98321434516721	0	lncRNA	TCONS_00014865	NA	NA	NA	NA	XLOC_006934	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006934), lincRNA [TCONS_00014865]"	chr8:135780003-135780062	hs|8q24.22	Agilent_HUMAN_G3V2	TCONS_00014865	TCONS_00014865	chr8	135780003	135780062	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9781_PI429285431	0.8950135	A	0.9141323	A	0.986835280715372	0	lncRNA	11298-1_{1..492}	lnc-DBC1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-DBC1-1:3	chr9	121493538	121494029	-	lnc-DBC1-1	lnc-DBC1-1:3	XLOC_007842	linc-ASTN2-2	NA	NA	NA	inter
LNCA_21_P0001957	3.5460103	P	2.8834023	A	1.58294156640266	0	lncRNA	ENST00000454444	NA	NA	NA	NA	XLOC_001825	NA	ENST00000454444	NA	NA	"BROAD Institute lincRNA (XLOC_001825), lincRNA [TCONS_00003086]"	chr2:208092958-208093017	hs|2q33.3	Agilent_HUMAN_G3V2	ENST00000454444	ENST00000454444	chr2	208092958	208093017	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001473	0.906166	A	0.92733204	A	0.98543591643752	0	lncRNA	TCONS_00001409	NA	NA	NA	NA	XLOC_000724	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000724), lincRNA [TCONS_00001409]"	chr1:18336502-18336443	hs|1p36.13	Agilent_HUMAN_G3V2	TCONS_00001409	TCONS_00001409	chr1	 18336443	 18336502	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35515_PI429285431	2.6186705	A	3.649155	P	0.489545717139809	0	lncRNA	36922-1_{1..968}	n342618|BC070391|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5120|NULL|-1.1228900|-0.2876736	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,UCSC,"	>n342618|BC070391|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5120|NULL|-1.1228900|-0.2876736	chr4	120370724	120371691	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30435_PI429285431	6.900226	P	6.7675567	P	1.09632025711809	0	lncRNA	32215-1_{1..1005}	n335571|CR542055|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000268924|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000268924|5.2708500|-0.2158995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335571|CR542055|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000268924|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000268924|5.2708500|-0.2158995	chr10	 13320304	 13321308	-	NA	NA	NA	NA	PHYH	NA	chr10:13319796-13342130	inner
CUST_46886_PI429285431	7.6432037	P	7.9904327	P	0.786092505219799	0	lncRNA	51010-1_{1..1138}	"gi|242247064|ref|NR_027941.1| Homo sapiens cytochrome c oxidase assembly homolog 11 (yeast) (COX11), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|242247064|ref|NR_027941.1| Homo sapiens cytochrome c oxidase assembly homolog 11 (yeast) (COX11), transcript variant 4, non-coding RNA"	Chr17	 53029259	 53030396	-	1353	NR_027941.1	NA	NA	NA	NA	NA	inter
CUST_11403_PI429285431	6.2745104	P	6.371185	P	0.935186105278056	0	lncRNA	12969-1_{1..894}	lnc-AL355490.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL355490.1-1:1	chr10	 99185780	 99186673	-	lnc-AL355490.1-1	lnc-AL355490.1-1:1	XLOC_008916	linc-RRP12	PGAM1	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60chr10:99175780-99193198"	NA	inter
CUST_7562_PI429285431	3.7755208	P	3.3251514	A	1.36639007418986	0	lncRNA	9198-1_{1..2898}	lnc-P2RX5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-P2RX5-2:1	chr17	  3629284	  3632181	-	lnc-P2RX5-2	lnc-P2RX5-2:1	ENSG00000251042	ENST00000513647	ITGAE	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.90;hg19_refFlat_GSG2:range=chr17:3627230-36296265'pad=0,hg19_refFlat_GSG2:range=chr17:3627230-36296265'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10chr17:3619284-3641210"	NA	inner
CUST_5292_PI429285431	1.2175797	A	0.8906322	A	1.25435655737061	0	lncRNA	5232-1_{1..957}	"transcript_id ""ENST00000561327.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561327.1"" | genecode_v17"	chr15	 89905718	 89906674	+	ENSG00000255571.2	ENST00000561327.1	CTD-2335A18.1	CTD-2335A18.1-007	NA	NA	NA	inter
CUST_1648_PI429285431	1.1616733	A	1.3070385	A	0.90415047433495	0	lncRNA	1633-1_{1..1123}	"transcript_id ""ENST00000601955.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601955.1"" | genecode_v17"	chr3	195435025	195436147	+	ENSG00000242086.3	ENST00000601955.1	AC069513.3	AC069513.3-016	NA	NA	NA	inter
CUST_37585_PI429285431	0.89812195	A	0.89629763	A	1.00126532210982	0	lncRNA	38686-1_{1..500}	n346062|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1612|NULL|-1.3066400|-0.3490547	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346062|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1612|NULL|-1.3066400|-0.3490547	chr6	127231987	127232486	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45446_PI429285431	7.5014415	P	7.3959265	P	1.07587837908046	0	lncRNA	49863-1_{1..2979}	"gi|214010159|ref|NR_024514.1| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 13 (ADAMTS13), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|214010159|ref|NR_024514.1| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 13 (ADAMTS13), transcript variant 4, non-coding RNA"	NW_003315925.1	   240433	   243411	+	11093	NR_024514.2	NA	NA	NA	NA	NA	Unknown
CUST_30368_PI429285431	0.883299	A	0.88732666	A	0.997212132168034	0	lncRNA	32144-1_{1..340}	n335466|AY789474|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257803|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257803|-0.0685187|-0.1070290	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335466|AY789474|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257803|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257803|-0.0685187|-0.1070290	chr13	 20797502	 20797841	-	NA	NA	NA	NA	GJB6	NA	chr13:20796101-20806534	inner
CUST_45393_PI429285431	1.1704886	A	0.9020869	A	1.20447270458036	0	lncRNA	49823-1_{1..560}	"gi|397139337|ref|XR_108983.2| PREDICTED: Homo sapiens uncharacterized LOC100507364 (LOC100507364), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139337|ref|XR_108983.2| PREDICTED: Homo sapiens uncharacterized LOC100507364 (LOC100507364), misc_RNA"	NA	NA	NA	NA	NA	XR_108983.2	NA	NA	NA	NA	NA	Unknown
CUST_16958_PI429285431	0.8815391	A	0.88742876	A	0.995925920448432	0	lncRNA	18670-1_{1..701}	lnc-AIFM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AIFM2-1:1	chr10	 71767511	 71768211	-	lnc-AIFM2-1	lnc-AIFM2-1:1	XLOC_008844	linc-NEUROG3	NA	NA	NA	inter
CUST_48114_PI429285431	7.0538006	P	7.2491727	P	0.873347612991565	0	lncRNA	51986-1_{1..389}	"gi|397138532|ref|XR_159522.1| PREDICTED: Homo sapiens uncharacterized LOC100653206, transcript variant 2 (LOC100653206), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138532|ref|XR_159522.1| PREDICTED: Homo sapiens uncharacterized LOC100653206, transcript variant 2 (LOC100653206), misc_RNA"	NA	NA	NA	NA	NA	XR_159522.1	NA	NA	NA	NA	NA	Unknown
CUST_48820_PI429285431	3.7849007	P	4.2547436	P	0.722043219237512	0	lncRNA	52657-1_{1..223}	hg19_lincRNAsTranscripts_TCONS_l2_00014347 range=chr2:242913365-242913680 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014347 range=chr2:242913365-242913680 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	242913365	242913587	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44532_PI429285431	7.6554604	P	7.889658	P	0.850157709488234	0	lncRNA	49127-1_{1..609}	"gi|310119528|ref|XR_108598.1| PREDICTED: Homo sapiens uncharacterized LOC100287592 (LOC100287592), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310119528|ref|XR_108598.1| PREDICTED: Homo sapiens uncharacterized LOC100287592 (LOC100287592), misc_RNA"	Chr5	 50265094	 50265702	-	100287592	XR_108598.2	NA	NA	NA	NA	NA	inter
CUST_3351_PI429285431	1.6424291	A	0.89189744	A	1.68241271671009	0	lncRNA	3326-1_{1..572}	"transcript_id ""ENST00000525376.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525376.1"" | genecode_v17"	chr8	145923999	145924570	-	ENSG00000254533.1	ENST00000525376.1	AF186192.1	AF186192.1-001	NA	NA	NA	inter
LNCA_21_P0014058	0.88202375	A	0.88693446	A	0.996601941721308	0	lncRNA	ENST00000461759	XR_108299	XR_108299	NA	Hs.675411	MGST3	microsomal glutathione S-transferase 3	ENST00000461759	THC2524393	GO:0006629|GO:0019370|GO:0005792|GO:0006805|GO:0005783|GO:0005624|GO:0004364|GO:0004602|GO:0007165|GO:0004601|GO:0002540|GO:0016020|GO:0005789|GO:0016021|GO:0016740	"PREDICTED: Homo sapiens hypothetical LOC100505828 (LOC100505828), miscRNA [XR_108299]"	chr1:165616857-165616916	hs|1q24.1	Agilent_HUMAN_G3V2	ENST00000461759	ENST00000461759	chr1	165616857	165616916	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40323_PI429285431	0.8908101	A	0.8810219	A	1.0068077312003	0	lncRNA	41126-1_{1..648}	n408363|NR_029461_3|lncRNA|Homosapiens||RefGeneNoncode|NR_029461_3||-1.2621800|-0.3068604	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408363|NR_029461_3|lncRNA|Homosapiens||RefGeneNoncode|NR_029461_3||-1.2621800|-0.3068604	chr6	  2868673	  2869320	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009363	1.6843151	A	1.122308	A	1.4763216711532	0	lncRNA	TCONS_00025763	NA	NA	NA	NA	XLOC_012572	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012572), lincRNA [TCONS_00025763]"	chr17:72058634-72058575	hs|17q25.1	Agilent_HUMAN_G3V2	TCONS_00025763	TCONS_00025763	chr17	 72058575	 72058634	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46128_PI429285431	6.7558527	P	7.0554338	P	0.812488275680502	0	lncRNA	50385-1_{1..3000}	"gi|336176118|ref|NR_038440.1| Homo sapiens TBX5 antisense RNA 1 (TBX5-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336176118|ref|NR_038440.1| Homo sapiens TBX5 antisense RNA 1 (TBX5-AS1), non-coding RNA"	Chr12	114846000	114848999	+	255480	NR_038440.1	NA	NA	NA	NA	NA	inter
CUST_29445_PI429285431	0.92082757	A	1.8222723	A	0.53535035726473	0	lncRNA	31201-1_{1..633}	n332846|AF075019|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066041|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066041|-1.1527200|-0.3070949	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332846|AF075019|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066041|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066041|-1.1527200|-0.3070949	chr17	  2515703	  2516335	+	NA	NA	NA	NA	PAFAH1B1	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90chr17:2505703-2526336"	NA	inner
CUST_23748_PI429285431	1.211354	A	2.1735096	A	0.51328940971182	0	lncRNA	25311-1_{1..208}	lnc-DYNLRB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DYNLRB1-1:1	chr20	 33042220	 33042427	+	lnc-DYNLRB1-1	lnc-DYNLRB1-1:1	ENSG00000231795.1	ITCH-IT1	ITCH	NA	chr20:33032220-33052357	inner
CUST_4171_PI429285431	0.8951675	A	1.2283902	A	0.793761393388026	0	lncRNA	4129-1_{1..337}	"transcript_id ""ENST00000541243.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000541243.1"" | genecode_v17"	chr12	 15304857	 15305193	+	ENSG00000255660.1	ENST00000541243.1	RERG-AS1	RERG-AS1-001	RERG	NA	chr12:15294857-15318217	inner
CUST_43488_PI429285431	6.938981	P	7.3063903	P	0.775173254510274	0	lncRNA	48282-1_{1..1069}	"gi|347446682|ref|NR_045147.1| Homo sapiens integrin beta 3 binding protein (beta3-endonexin) (ITGB3BP), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|347446682|ref|NR_045147.1| Homo sapiens integrin beta 3 binding protein (beta3-endonexin) (ITGB3BP), transcript variant 3, non-coding RNA"	Chr1	 63906441	 63907509	-	23421	NR_045147.1	NA	NA	NA	NA	NA	inter
CUST_51686_PI429285431	0.89099234	A	0.903772	A	0.991180932835431	0	lncRNA	55248-1_{1..932}	hg19_lincRNAsTranscripts_TCONS_l2_00011604 range=chr17:76489237-76495428 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011604 range=chr17:76489237-76495428 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 76489237	 76490168	+	NA	NA	NA	NA	DNAH17	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_DNAH2:range=chr17:7623053-77368515'pad=0,hg19_refFlat_DNAH2:range=chr17:7623053-77368515'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_DNAH9:range=chr17:11501816-118728445'pad=0,hg19_refFlat_DNAH9:range=chr17:11501816-118728445'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_DNAH17:range=chr17:76419987-765711395'pad=0,hg19_refFlat_DNAH17:range=chr17:76419987-765711395'pad=0 3'pad=0 strand=- repeatMasking=none,-98.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr17:76479237-76505428"	NA	inner
CUST_50674_PI429285431	1.1957785	A	1.231488	A	0.975551878152153	0	lncRNA	54348-1_{1..504}	hg19_lincRNAsTranscripts_TCONS_l2_00003036 range=chr10:45644169-45646066 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003036 range=chr10:45644169-45646066 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 45644169	 45644672	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44942_PI429285431	1.0515854	A	0.89277995	A	1.11636240836925	0	lncRNA	49454-1_{1..2821}	"gi|383792179|ref|NR_047551.1| Homo sapiens uncharacterized LOC100507500 (LOC100507500), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|383792179|ref|NR_047551.1| Homo sapiens uncharacterized LOC100507500 (LOC100507500), non-coding RNA"	Chr7	 55247443	 55250263	-	100507500	NR_047551.1	NA	NA	NA	"hg19_refFlat_EGFR:range=chr7:55086971-552733105'pad=0,hg19_refFlat_EGFR:range=chr7:55086971-552733105'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.40"	NA	inter
CUST_22446_PI429285431	8.837066	P	9.149967	P	0.805021377557291	0	lncRNA	24033-1_{1..563}	lnc-AC096644.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC096644.1-4:1	chr1	221053191	221053753	-	lnc-AC096644.1-4	lnc-AC096644.1-4:1	ENSG00000257551.1	HLA-AS1	HLX	"hg19_refFlat_HLX:range=chr1:221053200-2210580465'pad=0,hg19_refFlat_HLX:range=chr1:221053200-2210580465'pad=0 3'pad=0 strand=+ repeatMasking=none,-113.00chr1:221052743-221058401"	NA	inner
CUST_6914_PI429285431	5.9055853	P	5.7041435	P	1.14984691453313	0	lncRNA	6865-1_{1..473}	"transcript_id ""ENST00000585784.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585784.1"" | genecode_v17"	chr22	 17117910	 17118382	+	ENSG00000100181.16	ENST00000585784.1	TPTEP1	TPTEP1-011	NA	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80"	NA	inter
CUST_12416_PI429285431	3.9771533	P	5.518865	P	0.343477690134503	0	lncRNA	14029-1_{1..596}	lnc-NOC2L-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOC2L-1:4	chr1	   853402	   853997	-	lnc-NOC2L-1	lnc-NOC2L-1:4	XLOC_000670	linc-OR4F16-2	SAMD11	NA	chr1:861121-863715	inter
CUST_16446_PI429285431	4.338929	P	4.8814106	P	0.686588881573119	0	lncRNA	18145-1_{1..433}	lnc-FTH1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FTH1-3:1	chr11	 61891129	 61891561	-	lnc-FTH1-3	lnc-FTH1-3:1	XLOC_009452	linc-FTH1-1	INCENP	NA	chr11:61891445-61901289	inter
CUST_45681_PI429285431	1.2565119	A	0.9096355	A	1.27180404281904	0	lncRNA	50056-1_{1..3000}	"gi|223972640|ref|NR_026939.1| Homo sapiens cancer susceptibility candidate 2 (non-protein coding) (CASC2), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223972640|ref|NR_026939.1| Homo sapiens cancer susceptibility candidate 2 (non-protein coding) (CASC2), transcript variant 1, non-coding RNA"	Chr10	119806332	119809331	+	255082	NR_026939.1	NA	NA	NA	NA	NA	inter
CUST_31377_PI429285431	0.8851296	A	0.89075047	A	0.996111489719399	0	lncRNA	33155-2_{3001..5014}	n337843|BX641171|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|226|NULL|-1.1551700|-0.4373500	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337843|BX641171|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|226|NULL|-1.1551700|-0.4373500	chrX	121008721	121010734	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5413_PI429285431	0.8912755	A	1.0329238	A	0.90648289360999	0	lncRNA	5347-1_{1..329}	"transcript_id ""ENST00000573982.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000573982.1"" | genecode_v17"	chr16	  3631182	  3631510	+	ENSG00000261938.1	ENST00000573982.1	RP11-461A8.1	RP11-461A8.1-001	SLX4	"hg19_refFlat_SLX4:range=chr16:3632343-36589655'pad=0,hg19_refFlat_SLX4:range=chr16:3632343-36589655'pad=0 3'pad=0 strand=- repeatMasking=none,-99.10chr16:3631182-3643267"	NA	inner
CUST_12520_PI429285431	2.580463	A	2.504909	A	1.05376560799304	0	lncRNA	14131-1_{1..1084}	lnc-MAFB-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAFB-2:2	chr20	 38289105	 38290188	-	lnc-MAFB-2	lnc-MAFB-2:2	XLOC_013742	linc-KIAA1755-8	NA	NA	NA	inter
CUST_46639_PI429285431	0.914218	A	0.9217465	A	0.99479523343124	0	lncRNA	50814-1_{1..3000}	"gi|219521904|ref|NR_026556.1| Homo sapiens ankyrin repeat domain 26 pseudogene 1 (ANKRD26P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219521904|ref|NR_026556.1| Homo sapiens ankyrin repeat domain 26 pseudogene 1 (ANKRD26P1), non-coding RNA"	Chr16	 46503249	 46506248	-	124149	NR_026556.1	NA	NA	NA	NA	NA	inter
CUST_46782_PI429285431	0.8798465	A	0.8812405	A	0.999034219496779	0	lncRNA	50929-1_{1..770}	"gi|397139633|ref|XR_158911.1| PREDICTED: Homo sapiens uncharacterized LOC100131943 (LOC100131943), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139633|ref|XR_158911.1| PREDICTED: Homo sapiens uncharacterized LOC100131943 (LOC100131943), misc_RNA"	NA	NA	NA	NA	NA	XR_158911.1	NA	NA	NA	NA	NA	Unknown
CUST_50720_PI429285431	0.91630495	A	0.8931721	A	1.01616371171743	0	lncRNA	54389-1_{1..2481}	hg19_lincRNAsTranscripts_TCONS_l2_00003151 range=chr10:89578080-89580747 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003151 range=chr10:89578080-89580747 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 89578080	 89580560	+	NA	NA	NA	NA	ATAD1	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70chr10:89568080-89577917"	NA	inter
CUST_39883_PI429285431	2.0427604	A	1.3735824	A	1.59016668487581	0	lncRNA	40771-2_{3001..6000}	n406544|NR_024052_7|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_7||4.7428800|-0.2834894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n406544|NR_024052_7|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_7||4.7428800|-0.2834894	chr6	 30258173	 30261172	-	NA	NA	NA	NA	TRIM39-RPP21	NA	chr6:30297088-30304927	inter
CUST_21883_PI429285431	0.90274394	A	1.3557018	A	0.730543527569414	0	lncRNA	23492-1_{1..378}	lnc-MAP1LC3B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP1LC3B-2:1	chr16	 87249864	 87250241	+	lnc-MAP1LC3B-2	lnc-MAP1LC3B-2:1	ENSG00000261651.1	RP11-899L11.3	NA	NA	NA	inter
CUST_52146_PI429285431	3.9740858	P	4.0450745	P	0.95198536495381	0	lncRNA	55670-1_{1..567}	hg19_lincRNAsTranscripts_TCONS_l2_00017907 range=chr22:21389586-21398792 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017907 range=chr22:21389586-21398792 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 21389586	 21390152	-	NA	NA	NA	NA	P2RX6	NA	chr22:21379586-21382302	inter
CUST_15438_PI429285431	1.2949507	A	0.9007703	A	1.31419594886694	0	lncRNA	17126-1_{1..589}	lnc-HIVEP1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HIVEP1-2:3	chr6	 11953852	 11954440	+	lnc-HIVEP1-2	lnc-HIVEP1-2:3	XLOC_005173	linc-HIVEP1-2	NA	NA	NA	inter
LNCA_21_P0010013	0.88525236	A	0.8874209	A	0.998498011728206	0	lncRNA	TCONS_00028331	NA	NA	NA	NA	XLOC_013682	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013682), lincRNA [TCONS_00028331]"	chr20:22449402-22449343	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028331	TCONS_00028331	chr20	 22449343	 22449402	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34378_PI429285431	6.770672	P	6.3573513	P	1.33174761757741	0	lncRNA	35863-2_{3001..3448}	n341246|BC036204|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3714|NULL|-0.9067910|-0.2992945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341246|BC036204|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3714|NULL|-0.9067910|-0.2992945	chr7	 48494788	 48495235	-	NA	NA	NA	NA	ABCA13	"hg19_refFlat_ABCA13:range=chr7:48211081-486851085'pad=0,hg19_refFlat_ABCA13:range=chr7:48211081-486851085'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.20chr7:48481788-48505224"	NA	inner
CUST_34206_PI429285431	2.7147279	A	2.0698128	A	1.5636472657294	0	lncRNA	35720-1_{1..1067}	n341061|BC043531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3527|NULL|2.0201400|-0.2266673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341061|BC043531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3527|NULL|2.0201400|-0.2266673	chr11	 68914695	 68915761	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18466_PI429285431	1.3584651	A	0.97303635	A	1.30624792912287	0	lncRNA	20187-1_{1..449}	lnc-TREML1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TREML1-1:3	chr6	 41108336	 41108784	-	lnc-TREML1-1	lnc-TREML1-1:3	ENSG00000228342	RP1-238O23.4	TREML1	NA	chr6:41117342-41118570	inter
CUST_34671_PI429285431	1.826262	A	1.7481136	A	1.05566230068843	0	lncRNA	36123-1_{1..2821}	n341575|AK096739|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4046|NULL|0.1236510|-0.2603712	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341575|AK096739|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4046|NULL|0.1236510|-0.2603712	chr8	103905961	103908781	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00"	NA	inter
CUST_1756_PI429285431	0.8948004	A	1.0922067	A	0.872117060605181	0	lncRNA	1742-1_{1..825}	"transcript_id ""ENST00000510772.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510772.1"" | genecode_v17"	chr4	 41885077	 41885901	-	ENSG00000249771.1	ENST00000510772.1	RP11-457P14.5	RP11-457P14.5-001	NA	NA	NA	inter
LNCA_21_P0011424	6.1606436	P	6.311169	P	0.900922305399843	0	lncRNA	THC2662045	NA	NA	NA	NA	XLOC_l2_005179	NA	NA	THC2662045	NA	"BROAD Institute lincRNA (XLOC_l2_005179), lincRNA [TCONS_l2_00009669]"	chr16:031719063-031719122	hs|16p11.2	Agilent_HUMAN_G3V2	THC2662045	THC2662045	chr16	 31719063	 31719122	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13099_PI429285431	1.829568	A	0.9154292	A	1.88444383922301	0	lncRNA	14723-1_{1..1067}	lnc-UQCRFS1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UQCRFS1-7:1	chr19	 28264453	 28265519	-	lnc-UQCRFS1-7	lnc-UQCRFS1-7:1	XLOC_013283	linc-ZNF681-5	NA	NA	NA	inter
CUST_46026_PI429285431	2.4589162	A	1.3456708	A	2.16331747233649	0	lncRNA	50307-2_{3001..5147}	"gi|390131989|ref|NR_051992.1| Homo sapiens SUMO1/sentrin specific peptidase 1 (SENP1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|390131989|ref|NR_051992.1| Homo sapiens SUMO1/sentrin specific peptidase 1 (SENP1), transcript variant 4, non-coding RNA"	Chr12	 48439681	 48441827	-	29843	NR_051992.1	NA	NA	NA	NA	NA	inter
CUST_40374_PI429285431	9.664163	P	8.500622	P	2.24006562791902	0	lncRNA	41170-2_{3001..3633}	n409153|NR_033290|lncRNA|Homosapiens||RefGeneNoncode|NR_033290||4.8885600|-0.2154990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409153|NR_033290|lncRNA|Homosapiens||RefGeneNoncode|NR_033290||4.8885600|-0.2154990	chr4	 38872353	 38872985	+	NA	NA	NA	NA	FAM114A1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50chr4:38869354-38947365"	NA	inter
CUST_27414_PI429285431	2.9490283	A	1.0277255	A	3.78764941219563	0	lncRNA	28979-1_{1..405}	n324584|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039919|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039919|-0.9646530|-0.2084056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324584|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039919|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039919|-0.9646530|-0.2084056	chr6	 14502535	 14502939	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50916_PI429285431	0.8870477	A	0.8947483	A	0.994676570759161	0	lncRNA	54557-1_{1..232}	hg19_lincRNAsTranscripts_TCONS_l2_00006125 range=chr12:9552391-9552842 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006125 range=chr12:9552391-9552842 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  9552391	  9552622	-	NA	NA	NA	NA	LOC728715	NA	chr12:9549658-9555094	inter
CUST_14206_PI429285431	3.7081623	P	4.214634	P	0.70394191671893	0	lncRNA	15858-1_{1..403}	lnc-DPH5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DPH5-1:1	chr1	101701881	101702283	-	lnc-DPH5-1	lnc-DPH5-1:1	XLOC_000942	linc-DPH5	S1PR1	NA	chr1:101702305-101707076	inter
CUST_31387_PI429285431	2.1969855	A	2.7605295	A	0.676637950146912	0	lncRNA	33165-1_{1..3000}	n337853|CR627122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|236|NULL|-1.1633500|-0.4378281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337853|CR627122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|236|NULL|-1.1633500|-0.4378281	chrX	131506031	131509030	-	NA	NA	NA	NA	MBNL3	NA	chrX:131503342-131521219	inner
CUST_34039_PI429285431	0.8877857	A	0.96727276	A	0.946394070621901	0	lncRNA	35571-1_{1..1590}	n340857|BC044856|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3322|NULL|-0.8312390|-0.2377317	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340857|BC044856|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3322|NULL|-0.8312390|-0.2377317	chr6	 15995174	 15996763	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18911_PI429285431	0.9134469	A	0.92669815	A	0.990856987293255	0	lncRNA	20602-1_{1..1761}	lnc-ANKRD20A3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ANKRD20A3-3:1	chr9	 43189369	 43191129	-	lnc-ANKRD20A3-3	lnc-ANKRD20A3-3:1	ENSG00000236322	RP11-327I22.8	NA	NA	NA	inter
CUST_8036_PI429285431	0.89158875	A	1.5086713	A	0.651988060261683	0	lncRNA	9644-1_{1..800}	lnc-EVX1-10:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EVX1-10:8	chr7	 27173700	 27174499	+	lnc-EVX1-10	lnc-EVX1-10:8	ENSG00000253552	AC004080.12	HOXA5	NA	chr7:27180671-27183287	inter
CUST_14604_PI429285431	1.8236849	A	1.4343784	A	1.3097636523059	0	lncRNA	16272-1_{1..881}	lnc-RASA1-3:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASA1-3:15	chr5	 87587201	 87588081	+	lnc-RASA1-3	lnc-RASA1-3:15	XLOC_004457	linc-POLR3G-10	NA	NA	NA	inter
CUST_21058_PI429285431	1.6722969	A	1.2386162	A	1.35067511747668	0	lncRNA	22685-1_{1..434}	lnc-SLAIN1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLAIN1-4:4	chr13	 79189810	 79190243	+	lnc-SLAIN1-4	lnc-SLAIN1-4:4	ENSG00000234377.2	POU4F1-AS1	RNF219	"hg19_refFlat_RNF219:range=chr13:79189715-792332555'pad=0,hg19_refFlat_RNF219:range=chr13:79189715-792332555'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00chr13:79188421-79200097"	NA	inter
CUST_23441_PI429285431	10.422202	P	10.237715	P	1.13641281059812	0	lncRNA	25009-1_{1..356}	lnc-CTTN-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTTN-3:1	chr11	 70493446	 70493801	+	lnc-CTTN-3	lnc-CTTN-3:1	ENSG00000236262.1	SHANK2-AS2	SHANK2	NA	chr11:70483446-70503667	inner
CUST_51096_PI429285431	0.98427516	A	1.0043404	A	0.986188107149471	0	lncRNA	54734-1_{1..1874}	hg19_lincRNAsTranscripts_TCONS_l2_00007238 range=chr13:64410945-64413535 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007238 range=chr13:64410945-64413535 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 64410945	 64412818	-	NA	NA	NA	NA	LOC100507505	NA	chr13:64400945-64407126	inter
CUST_46627_PI429285431	5.2144	P	5.374982	P	0.894664080198016	0	lncRNA	50803-1_{1..611}	"gi|397139621|ref|XR_158895.1| PREDICTED: Homo sapiens uncharacterized LOC100506928 (LOC100506928), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139621|ref|XR_158895.1| PREDICTED: Homo sapiens uncharacterized LOC100506928 (LOC100506928), misc_RNA"	NA	NA	NA	NA	NA	XR_158895.1	NA	NA	NA	"hg19_refFlat_ITGAL:range=chr16:30484159-305329865'pad=0,hg19_refFlat_ITGAL:range=chr16:30484159-305329865'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.80"	NA	Unknown
CUST_8207_PI429285431	0.9132843	A	0.92709833	A	0.990470539894461	0	lncRNA	9801-1_{1..3000}	lnc-VKORC1L1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VKORC1L1-2:1	chr7	 66006231	 66009230	+	lnc-VKORC1L1-2	lnc-VKORC1L1-2:1	ENSG00000249705	ENST00000418858	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_TVP23C:range=chr17:15406178-154667625'pad=0,hg19_refFlat_TVP23C:range=chr17:15406178-154667625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-58.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70"	NA	inter
CUST_50593_PI429285431	6.865818	P	7.3066835	P	0.736692520295037	0	lncRNA	54283-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00003636 range=chr10:81451162-81588572 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003636 range=chr10:81451162-81588572 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 81451162	 81454161	-	NA	NA	NA	NA	NA	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90"	NA	inter
CUST_30126_PI429285431	0.9224837	A	0.97121567	A	0.966785693925558	0	lncRNA	31899-1_{1..331}	n334766|AJ131606|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244640|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244640|-1.0811200|-0.4745260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334766|AJ131606|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244640|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244640|-1.0811200|-0.4745260	chr11	 28316816	 28317146	+	NA	NA	NA	NA	METTL15	"hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40chr11:28306816-28327147"	NA	inner
CUST_23832_PI429285431	0.8937045	A	0.90875196	A	0.989624100448059	0	lncRNA	25395-1_{1..1053}	lnc-WDFY4-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDFY4-3:2	chr10	 50358850	 50359902	+	lnc-WDFY4-3	lnc-WDFY4-3:2	ENSG00000234736.1	RP11-507P23.3	C10orf128	NA	chr10:50363890-50369019	inter
LNCA_21_P0014873	1.4858084	A	2.6156635	A	0.456961618676143	0	lncRNA	XR_132770	XR_132770	XR_132770	NA	NA	ARL2BPP2	ADP-ribosylation factor-like 2 binding protein pseudogene 2	NA	NA	NA	"PREDICTED: Homo sapiens ADP-ribosylation factor-like 2 binding protein pseudogene 2 (ARL2BPP2), miscRNA [XR_132770]"	chr12:53157608-53157667	hs|12q13.13	Agilent_HUMAN_G3V2	XR_132770	XR_132770	chr12	 53157608	 53157667	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39194_PI429285431	2.0565362	A	1.4229242	A	1.55144440526289	0	lncRNA	40169-1_{1..1195}	n385949|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009whx.2||0.5244940|-0.1636897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385949|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009whx.2||0.5244940|-0.1636897	chr1	143718512	143719706	-	NA	NA	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_FAM91A1:range=chr8:124780943-1248249445'pad=0,hg19_refFlat_FAM91A1:range=chr8:124780943-1248249445'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10"	NA	inter
CUST_48177_PI429285431	3.5705712	P	4.1800637	P	0.655427222453587	0	lncRNA	52041-1_{1..2200}	"gi|310113408|ref|XR_111868.1| PREDICTED: Homo sapiens uncharacterized LOC100132272 (LOC100132272), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310113408|ref|XR_111868.1| PREDICTED: Homo sapiens uncharacterized LOC100132272 (LOC100132272), misc_RNA"	NA	NA	NA	NA	NA	XR_111868.1	NA	NA	NA	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.71;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	Unknown
CUST_8754_PI429285431	1.6188558	A	3.3373222	P	0.303871568145942	0	lncRNA	10296-1_{1..419}	lnc-FAM43A-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM43A-8:2	chr3	194231135	194231553	+	lnc-FAM43A-8	lnc-FAM43A-8:2	ENSG00000233058	AC046143.7	NA	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10"	NA	inter
LNCA_21_P0014229	1.9245572	A	2.7205522	A	0.575945817247317	0	lncRNA	XR_108947	XR_108947	XR_108947	NA	NA	LOC100505986	uncharacterized LOC100505986	ENST00000457964	THC2681175	NA	"PREDICTED: Homo sapiens hypothetical LOC100505986 (LOC100505986), miscRNA [XR_108947]"	chr9:129403513-129403572	hs|9q33.3	Agilent_HUMAN_G3V2	XR_108947	XR_108947	chr9	129403513	129403572	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009031	5.7620854	P	5.512159	P	1.18914644839707	0	lncRNA	TCONS_00024654	NA	NA	NA	NA	XLOC_011942	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011942), lincRNA [TCONS_00024654]"	chr16:52330973-52330914	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00024654	TCONS_00024654	chr16	 52330914	 52330973	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27055_PI429285431	4.3301935	P	4.898047	P	0.674619768672585	0	lncRNA	28589-1_{1..780}	n324166|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051497|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051497|-0.4616460|-0.2048090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324166|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051497|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051497|-0.4616460|-0.2048090	chr9	  1031218	  1031997	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20373_PI429285431	0.8965969	A	0.89925134	A	0.998161774008792	0	lncRNA	22015-1_{1..605}	lnc-QDPR-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-QDPR-2:1	chr4	 17633930	 17634534	-	lnc-QDPR-2	lnc-QDPR-2:1	ENSG00000254360.1	AC006160.8	FAM184B	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50chr4:17633696-17644062"	NA	inner
CUST_21417_PI429285431	2.9848328	A	2.598639	A	1.30694080597427	0	lncRNA	23037-1_{1..874}	lnc-TMEM86A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM86A-1:1	chr11	 18761971	 18762844	+	lnc-TMEM86A-1	lnc-TMEM86A-1:1	ENSG00000254966.1	RP11-1081L13.4	PTPN5	"hg19_refFlat_IGSF22:range=chr11:18726015-187457835'pad=0,hg19_refFlat_IGSF22:range=chr11:18726015-187457835'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50chr11:18751971-18772115"	NA	inner
CUST_5659_PI429285431	1.8186452	A	0.97731227	A	1.79170476327307	0	lncRNA	5585-1_{1..632}	"transcript_id ""ENST00000569731.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569731.1"" | genecode_v17"	chr16	 81773231	 81773862	+	ENSG00000261218.1	ENST00000569731.1	RP11-960L18.1	RP11-960L18.1-006	NA	NA	NA	inter
CUST_19486_PI429285431	7.091993	P	7.473049	P	0.767875328237911	0	lncRNA	21142-1_{1..575}	lnc-NRIP2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NRIP2-5:2	chr12	  2800235	  2800809	-	lnc-NRIP2-5	lnc-NRIP2-5:2	ENSG00000246627.2	CACNA1C-AS1	CACNA1C	"hg19_refFlat_CACNA1C:range=chr12:2162729-28003655'pad=0,hg19_refFlat_CACNA1C:range=chr12:2162729-28003655'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.00chr12:2790235-2807115"	NA	inner
CUST_42231_PI429285431	0.8913074	A	0.9030494	A	0.991894097256426	0	lncRNA	44345-1_{1..81}	ENST00000580634 ncrna:miRNA chromosome:GRCh37:14:55344831:55344911:-1 gene:ENSG00000265432 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580634 ncrna:miRNA chromosome:GRCh37:14:55344831:55344911:-1 gene:ENSG00000265432 gene_biotype:miRNA transcript_biotype:miRNA	chr14	 55344831	 55344911	-	ENSG00000265432	ENST00000580634	NA	NA	GCH1	NA	chr14:55334831-55354911	inner
CUST_19900_PI429285431	3.8327904	P	4.4535756	P	0.650316890457143	0	lncRNA	21555-1_{1..549}	lnc-GABRB1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GABRB1-2:1	chr4	 46435095	 46435643	+	lnc-GABRB1-2	lnc-GABRB1-2:1	ENSG00000249330.1	RP11-436F23.1	NA	NA	NA	inter
CUST_2513_PI429285431	4.0133142	P	4.3909035	P	0.769722700124902	0	lncRNA	2504-2_{3001..6000}	"transcript_id ""ENST00000530000.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000530000.1"" | genecode_v17"	chr6	 33881879	 33884878	+	ENSG00000233183.2	ENST00000530000.1	RP3-468B3.2	RP3-468B3.2-003	NA	NA	NA	inter
CUST_41584_PI429285431	3.6715164	P	3.6516764	P	1.01384703432071	0	lncRNA	42910-1_{1..106}	ENST00000580135 ncrna:miRNA chromosome:GRCh37:X:39520470:39520575:1 gene:ENSG00000263730 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580135 ncrna:miRNA chromosome:GRCh37:X:39520470:39520575:1 gene:ENSG00000263730 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 39520470	 39520575	+	ENSG00000263730	ENST00000580135	NA	NA	NA	NA	NA	inter
CUST_29792_PI429285431	5.2690115	P	3.385127	P	3.69067448892625	0	lncRNA	31555-1_{1..382}	n333500|BC032790|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000092807|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000092807|1.3588900|-0.2934262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333500|BC032790|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000092807|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000092807|1.3588900|-0.2934262	chr1	179834130	179834511	-	NA	NA	NA	NA	TOR1AIP2	NA	chr1:179824130-179844512	inner
CUST_23995_PI429285431	1.2277906	A	0.91351783	A	1.24338473313013	0	lncRNA	25550-1_{1..3000}	lnc-TRRAP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRRAP-1:1	chr7	 98633040	 98636039	+	lnc-TRRAP-1	lnc-TRRAP-1:1	ENSG00000242687.2	AC004893.11	SMURF1	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_SMURF1:range=chr7:98628207-987414035'pad=0,hg19_refFlat_SMURF1:range=chr7:98628207-987414035'pad=0 3'pad=0 strand=- repeatMasking=none,-93.80;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80chr7:98625058-98644100"	NA	inner
CUST_12118_PI429285431	3.4959018	P	3.2517002	A	1.18443711172171	0	lncRNA	13714-1_{1..839}	lnc-ZHX3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZHX3-1:2	chr20	 39764342	 39765180	-	lnc-ZHX3-1	lnc-ZHX3-1:2	XLOC_013744	linc-MAFB-2	PLCG1	NA	chr20:39766161-39775073	inter
CUST_34318_PI429285431	6.018945	P	6.0695405	P	0.96553770248725	0	lncRNA	35812-1_{1..1585}	n341179|BC033371|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3645|NULL|-0.0334453|-0.1744010	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341179|BC033371|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3645|NULL|-0.0334453|-0.1744010	chr7	  5553484	  5555068	+	NA	NA	NA	NA	FBXL18	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70chr7:5543484-5553399"	NA	inter
CUST_32547_PI429285431	8.793514	P	8.267851	P	1.43959500337581	0	lncRNA	34212-2_{3001..5828}	n339161|S62539|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1592|NULL|15.3458000|-0.1056939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339161|S62539|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1592|NULL|15.3458000|-0.1056939	chr2	227602937	227605764	-	NA	NA	NA	NA	IRS1	NA	chr2:227596033-227663506	inner
CUST_50344_PI429285431	4.463723	P	4.4797335	P	0.9889637186319	0	lncRNA	54059-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00029619 range=chr9:136100111-136106316 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029619 range=chr9:136100111-136106316 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	136100111	136103110	-	NA	NA	NA	NA	ABO	NA	chr9:136100292-136116316	inter
CUST_33780_PI429285431	3.1571565	P	3.5457096	P	0.763895342265338	0	lncRNA	35333-1_{1..2053}	n340566|BC042169|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3028|NULL|-1.2295200|-0.1862769	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340566|BC042169|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3028|NULL|-1.2295200|-0.1862769	chr5	 98105321	 98107373	-	NA	NA	NA	NA	RGMB	NA	chr5:98095321-98118788	inter
CUST_20554_PI429285431	1.437785	A	1.1715906	A	1.20263128991544	0	lncRNA	22195-1_{1..643}	lnc-AC114947.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC114947.1.1-1:2	chr5	 43290570	 43291212	+	lnc-AC114947.1.1-1	lnc-AC114947.1.1-1:2	ENSG00000261604.1	CTD-2636A23.2	NIM1	NA	chr5:43280570-43280952	inner
CUST_30347_PI429285431	8.442817	P	8.299088	P	1.10475694457532	0	lncRNA	32123-1_{1..537}	n335401|AY671585|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000256868|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000256868|-1.0702200|-0.2129939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335401|AY671585|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000256868|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000256868|-1.0702200|-0.2129939	chr14	106322146	106322682	+	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106839886	inter
CUST_15661_PI429285431	0.8855616	A	1.6153083	A	0.603009777499367	0	lncRNA	17351-4_{9001..12000}	lnc-SNURF-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNURF-1:7	chr15	 25274737	 25277736	+	lnc-SNURF-1	lnc-SNURF-1:7	XLOC_011183	linc-GABRA5-7	SNRPN	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40chr15:25255737-25291705"	NA	inter
CUST_25350_PI429285431	10.434159	P	10.843471	P	0.752982374293195	0	lncRNA	26880-2_{3001..4158}	lnc-SAMD14-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAMD14-2:1	chr17	 48229508	 48230665	-	lnc-SAMD14-2	lnc-SAMD14-2:1	ENSG00000108819.9	PPP1R9B	PPP1R9B	NA	chr17:48216508-48227877	inner
LNCA_21_P0003036	2.307455	A	2.9254098	P	0.651593988966095	0	lncRNA	TCONS_00006248	NA	NA	NA	NA	XLOC_002841	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002841), lincRNA [TCONS_00006248]"	chr3:141580088-141580147	hs|3q23	Agilent_HUMAN_G3V2	TCONS_00006248	TCONS_00006248	chr3	141580088	141580147	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50562_PI429285431	4.4823136	P	4.9714766	P	0.712438309116366	0	lncRNA	54254-1_{1..680}	hg19_lincRNAsTranscripts_TCONS_l2_00030995 range=chrY:15864978-15983586 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030995 range=chrY:15864978-15983586 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrY	 15864978	 15865657	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46583_PI429285431	1.0699317	A	0.8890997	A	1.13353740610537	0	lncRNA	50767-1_{1..2443}	"gi|299829250|ref|NR_033904.1| Homo sapiens uncharacterized protein FLJ39639 (FLJ39639), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299829250|ref|NR_033904.1| Homo sapiens uncharacterized protein FLJ39639 (FLJ39639), non-coding RNA"	Chr16	  3313768	  3316210	+	283876	NR_033904.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.10"	NA	inter
CUST_9201_PI429285431	0.8771996	A	0.87971455	A	0.998258288042023	0	lncRNA	10713-1_{1..2423}	lnc-MRPL39-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPL39-2:1	chr21	 26934789	 26937211	-	lnc-MRPL39-2	lnc-MRPL39-2:1	ENSG00000246147	XLOC_014038	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_30556_PI429285431	0.8796032	A	0.881613	A	0.998607882692054	0	lncRNA	32337-1_{1..311}	n335735|X03045|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000320958|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000320958|1.5697700|-0.2514101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335735|X03045|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000320958|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000320958|1.5697700|-0.2514101	chr2	 21230263	 21230573	-	NA	NA	NA	NA	APOB	NA	chr2:21224301-21240574	inner
CUST_20061_PI429285431	3.3842278	P	3.4652767	P	0.945370072986314	0	lncRNA	21712-1_{1..396}	lnc-WDPCP-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDPCP-1:4	chr2	 63273617	 63274012	-	lnc-WDPCP-1	lnc-WDPCP-1:4	ENSG00000231609.1	AC009501.4	EHBP1	NA	chr2:63263617-63273622	inner
CUST_30047_PI429285431	0.8920233	A	0.89664656	A	0.996800529614886	0	lncRNA	31816-1_{1..222}	n334551|U52699|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220266_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220266_04|-1.1094100|-0.3657121	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334551|U52699|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220266_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220266_04|-1.1094100|-0.3657121	chr6	  3536616	  3536837	-	NA	NA	NA	NA	NA	"hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80"	NA	inter
CUST_9320_PI429285431	0.8786411	A	0.8792886	A	0.999551287901986	0	lncRNA	10828-1_{1..610}	lnc-RAB6C-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB6C-4:1	chr2	130046523	130047132	+	lnc-RAB6C-4	lnc-RAB6C-4:1	XLOC_001667	linc-RAB6C-4	NA	NA	NA	inter
CUST_46534_PI429285431	1.6634643	A	2.0792353	A	0.749618778951563	0	lncRNA	50723-1_{1..1785}	"gi|223468660|ref|NR_026799.1| Homo sapiens SH3-domain GRB2-like 3 (SH3GL3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223468660|ref|NR_026799.1| Homo sapiens SH3-domain GRB2-like 3 (SH3GL3), transcript variant 2, non-coding RNA"	Chr15	 84116091	 84117875	+	6457	NR_026799.1	NA	NA	NA	NA	NA	inter
CUST_11781_PI429285431	1.0145309	A	0.9702621	A	1.0311604246068	0	lncRNA	13361-1_{1..296}	lnc-ZNF804A-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF804A-1:7	chr2	186084381	186084676	+	lnc-ZNF804A-1	lnc-ZNF804A-1:7	XLOC_001780	linc-FSIP2	NA	NA	NA	inter
CUST_10189_PI429285431	1.3556569	A	1.2877239	A	1.04821379443531	0	lncRNA	11714-2_{3001..3325}	lnc-PREX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PREX1-2:1	chr20	 47135595	 47135919	-	lnc-PREX1-2	lnc-PREX1-2:1	XLOC_013779	linc-SULF2-10	NA	NA	NA	inter
CUST_42895_PI429285431	6.505572	P	6.8232536	P	0.802358225719117	0	lncRNA	45988-1_{1..111}	ENST00000408166 ncrna:snoRNA chromosome:GRCh37:8:57033801:57033911:-1 gene:ENSG00000221093 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408166 ncrna:snoRNA chromosome:GRCh37:8:57033801:57033911:-1 gene:ENSG00000221093 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	 57033801	 57033911	-	ENSG00000221093	ENST00000408166	NA	NA	MOS	NA	chr8:57025501-57026541	inter
CUST_30201_PI429285431	4.454705	P	5.222074	P	0.58748788244674	0	lncRNA	31976-1_{1..290}	n335013|AJ488208|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248178|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248178|-1.0798600|-0.2591561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335013|AJ488208|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248178|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248178|-1.0798600|-0.2591561	chr11	 20044388	 20044677	+	NA	NA	NA	NA	NAV2	NA	chr11:20034388-20054678	inner
CUST_43277_PI429285431	2.4031699	A	1.6289626	A	1.71025008295561	0	lncRNA	48095-1_{1..668}	ENST00000602954 havana:sense_intronic chromosome:GRCh37:14:51129229:51129896:-1 gene:ENSG00000269906 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602954 havana:sense_intronic chromosome:GRCh37:14:51129229:51129896:-1 gene:ENSG00000269906 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr14	 51129229	 51129896	-	ENSG00000269906	ENST00000602954	NA	NA	SAV1	NA	chr14:51119229-51135023	inner
CUST_6005_PI429285431	5.243188	P	5.4185677	P	0.885534426409253	0	lncRNA	5930-1_{1..540}	"transcript_id ""ENST00000572353.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000572353.1"" | genecode_v17"	chr17	 77893173	 77893712	+	ENSG00000262188.1	ENST00000572353.1	RP11-353N14.4	RP11-353N14.4-002	NA	NA	NA	inter
CUST_3466_PI429285431	0.8860832	A	1.3320287	A	0.734103049352762	0	lncRNA	3437-1_{1..391}	"transcript_id ""ENST00000421482.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421482.1"" | genecode_v17"	chr9	 91586553	 91586943	+	ENSG00000228658.1	ENST00000421482.1	RP11-791O21.5	RP11-791O21.5-001	C9orf47	NA	chr9:91585724-91601213	inter
LNCA_19_P00315651	3.8977833	P	4.207222	P	0.806955655157025	0	lncRNA	XR_132670	XR_132670	XR_132670	NA	NA	LOC100652730	uncharacterized LOC100652730	ENST00000412500	THC2635964	NA	"PREDICTED: Homo sapiens hypothetical LOC100652730 (LOC100652730), miscRNA [XR_132670]"	chr20:61405827-61405768	hs|20q13.33	Agilent_HUMAN_G3V2	XR_132670	XR_132670	chr20	 61405768	 61405827	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31578_PI429285431	8.020835	P	8.344831	P	0.798854131340033	0	lncRNA	33335-1_{1..1420}	n338080|BC036921|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|467|NULL|-0.9201540|-0.2421096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338080|BC036921|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|467|NULL|-0.9201540|-0.2421096	chr22	 39066472	 39067891	-	NA	NA	NA	NA	CBY1	"hg19_refFlat_CBY1:range=chr22:39061600-390692415'pad=0,hg19_refFlat_CBY1:range=chr22:39061600-390692415'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.30;hg19_refFlat_CBY1:range=chr22:39064060-390692415'pad=0,hg19_refFlat_CBY1:range=chr22:39064060-390692415'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.30chr22:39056472-39069855"	NA	inner
CUST_29840_PI429285431	6.1891294	P	6.2108197	P	0.985077884585785	0	lncRNA	31603-1_{1..247}	n333722|L01487|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191460|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191460|0.7138330|-0.1093039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333722|L01487|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191460|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191460|0.7138330|-0.1093039	chr5	141993517	141993763	-	NA	NA	NA	NA	FGF1	NA	chr5:141983517-142010900	inner
CUST_9534_PI429285431	1.0516745	A	1.4621884	A	0.752355330728289	0	lncRNA	11046-1_{1..330}	lnc-ARL6IP5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARL6IP5-2:1	chr3	 69018550	 69018879	+	lnc-ARL6IP5-2	lnc-ARL6IP5-2:1	XLOC_002694	linc-ARL6IP5	C3orf64	NA	chr3:69024368-69028827	inter
CUST_17011_PI429285431	0.8788382	A	0.8823519	A	0.997567452202859	0	lncRNA	18722-1_{1..470}	lnc-GJD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GJD2-1:1	chr15	 35012518	 35012987	-	lnc-GJD2-1	lnc-GJD2-1:1	XLOC_011422	linc-GOLGA8B-1	NA	NA	NA	inter
LNCA_21_P0009409	9.161632	P	9.475544	P	0.804457438897101	0	lncRNA	TCONS_00026152	NA	NA	NA	NA	XLOC_012567	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012567), lincRNA [TCONS_00026152]"	chr17:70335702-70335643	hs|17q24.3	Agilent_HUMAN_G3V2	TCONS_00026152	TCONS_00026152	chr17	 70335643	 70335702	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2623_PI429285431	0.89295006	A	0.90072805	A	0.994623215092847	0	lncRNA	2610-1_{1..583}	"transcript_id ""ENST00000444229.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444229.1"" | genecode_v17"	chr6	126498339	126498921	+	ENSG00000231842.1	ENST00000444229.1	RP11-527F13.1	RP11-527F13.1-001	NA	NA	NA	inter
CUST_11969_PI429285431	0.89633346	A	0.89511573	A	1.00084442244023	0	lncRNA	13548-1_{1..497}	lnc-CLDN16-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLDN16-2:2	chr3	189847074	189847570	+	lnc-CLDN16-2	lnc-CLDN16-2:2	XLOC_002967	linc-CLDN16	LEPREL1	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.11;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70chr3:189837074-189840226"	NA	inter
CUST_48811_PI429285431	4.472315	P	4.8554506	P	0.766769257226064	0	lncRNA	52649-1_{1..993}	hg19_lincRNAsTranscripts_TCONS_l2_00014333 range=chr2:242627227-242633572 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014333 range=chr2:242627227-242633572 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	242627227	242628219	+	NA	NA	NA	NA	ING5	NA	chr2:242641456-242643572	inter
LNCA_21_P0003184	7.2060056	P	7.5410304	P	0.792770508728407	0	lncRNA	TCONS_00006680	NA	NA	NA	NA	XLOC_003281	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003281), lincRNA [TCONS_00006680]"	chr3:149740357-149735762	hs|3q25.1	Agilent_HUMAN_G3V2	TCONS_00006680	TCONS_00006680	chr3	149735762	149740357	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31918_PI429285431	2.2109663	A	1.7984943	A	1.33096441545458	0	lncRNA	33647-1_{1..3000}	n338473|BX648736|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|870|NULL|0.1724360|-0.1914576	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338473|BX648736|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|870|NULL|0.1724360|-0.1914576	chr14	 99649758	 99652757	+	NA	NA	NA	NA	BCL11B	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-20.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90chr14:99639758-99664558"	NA	inner
CUST_11821_PI429285431	1.68973	A	0.9049249	A	1.72285955504893	0	lncRNA	13403-1_{1..249}	lnc-TMX1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMX1-1:4	chr14	 51818735	 51818983	+	lnc-TMX1-1	lnc-TMX1-1:4	XLOC_010826	linc-FRMD6-2	NA	NA	NA	inter
CUST_4390_PI429285431	3.004133	A	3.246895	A	0.845125792494537	0	lncRNA	4341-1_{1..576}	"transcript_id ""ENST00000547515.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547515.1"" | genecode_v17"	chr12	 97666470	 97667045	-	ENSG00000257920.1	ENST00000547515.1	RP11-541G9.2	RP11-541G9.2-001	NA	NA	NA	inter
CUST_43693_PI429285431	1.2900681	A	3.1185656	A	0.281557697821767	0	lncRNA	48443-1_{1..1445}	"gi|338827641|ref|NR_040064.1| Homo sapiens chromosome 1 open reading frame 98 (C1orf98), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338827641|ref|NR_040064.1| Homo sapiens chromosome 1 open reading frame 98 (C1orf98), non-coding RNA"	Chr1	200311672	200313116	-	554279	NR_040064.1	NA	NA	NA	NA	NA	inter
CUST_9089_PI429285431	6.017771	P	4.663404	P	2.55684906777318	0	lncRNA	10610-1_{1..784}	lnc-KIAA1919-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1919-3:7	chr6	111897565	111898348	+	lnc-KIAA1919-3	lnc-KIAA1919-3:7	ENSG00000231889	TRAF3IP2-AS1	TRAF3IP2	NA	chr6:111887565-111907944	inter
CUST_35754_PI429285431	17.585659	P	17.355175	P	1.17322848170331	0	lncRNA	37174-1_{1..478}	n342933|Z12962|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5442|NULL|-1.1033700|-0.2678676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342933|Z12962|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5442|NULL|-1.1033700|-0.2678676	chr12	 56510373	 56510850	+	NA	NA	NA	NA	ZC3H10	NA	chr12:56512030-56516278	inner
CUST_33667_PI429285431	2.293171	A	2.8360772	A	0.686386841131054	0	lncRNA	35229-1_{1..762}	n340431|AF053748|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2892|NULL|3.9382600|-0.2314062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340431|AF053748|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2892|NULL|3.9382600|-0.2314062	chr5	 37815826	 37816587	-	NA	NA	NA	NA	GDNF	NA	chr5:37812779-37839782	inner
CUST_7910_PI429285431	0.9132683	A	1.3245775	A	0.75194070165896	0	lncRNA	9525-1_{1..1309}	lnc-SOD3-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOD3-6:1	chr4	 23057462	 23058770	+	lnc-SOD3-6	lnc-SOD3-6:1	ENSG00000248837	RP11-412P11.1	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60"	NA	inter
CUST_36877_PI429285431	6.024846	P	6.020105	P	1.00329161629328	0	lncRNA	38035-2_{3001..4038}	n345345|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_894|NULL|-1.3960400|-0.2266932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345345|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_894|NULL|-1.3960400|-0.2266932	chr17	 37703443	 37704480	+	NA	NA	NA	NA	CDK12	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40chr17:37690443-37690800"	NA	inter
CUST_895_PI429285431	2.0929744	A	0.9284878	A	2.24153433774879	0	lncRNA	884-1_{1..2244}	"transcript_id ""ENST00000589496.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589496.1"" | genecode_v17"	chr2	 61153044	 61155287	+	ENSG00000267520.1	ENST00000589496.1	RP11-373L24.1	RP11-373L24.1-001	REL	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00chr2:61143044-61150178"	NA	inter
CUST_5502_PI429285431	4.6705675	P	4.7617445	P	0.938756566975258	0	lncRNA	5434-1_{1..2486}	"transcript_id ""ENST00000563960.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000563960.1"" | genecode_v17"	chr16	 33215094	 33217579	-	ENSG00000260827.1	ENST00000563960.1	RP11-1437A8.4	RP11-1437A8.4-001	LOC653550	NA	chr16:33205094-33207559	inter
CUST_32268_PI429285431	1.1186526	A	0.91936046	A	1.14813488305834	0	lncRNA	33957-1_{1..3000}	n338846|AK124568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1269|NULL|-1.1894500|-0.3401477	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338846|AK124568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1269|NULL|-1.1894500|-0.3401477	chr12	  5023005	  5026004	+	NA	NA	NA	NA	KCNA1	NA	chr12:5019073-5027422	inner
CUST_23917_PI429285431	5.6937985	P	6.982478	P	0.409325513861271	0	lncRNA	25474-1_{1..641}	lnc-AC005323.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC005323.1.1-2:1	chr17	 10244381	 10245021	+	lnc-AC005323.1.1-2	lnc-AC005323.1.1-2:1	ENSG00000264067.1	RP11-401O9.3	MYH13	"hg19_refFlat_MYH13:range=chr17:10204268-102678475'pad=0,hg19_refFlat_MYH13:range=chr17:10204268-102678475'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80chr17:10234381-10254775"	NA	inner
CUST_15630_PI429285431	5.245834	P	5.3919573	P	0.903675490782025	0	lncRNA	17318-1_{1..1954}	lnc-C1orf222-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf222-1:1	chr1	  1946804	  1948757	-	lnc-C1orf222-1	lnc-C1orf222-1:1	XLOC_000675	linc-KIAA1751-1	GABRD	"hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40chr1:1950768-1956969"	NA	inter
CUST_32492_PI429285431	5.9477186	P	6.3520837	P	0.755568729667271	0	lncRNA	34160-1_{1..408}	n339097|AX772993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1527|NULL|-0.9215950|-0.0856770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339097|AX772993|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1527|NULL|-0.9215950|-0.0856770	chr12	  6948603	  6949010	-	NA	NA	NA	NA	LEPREL2	NA	chr12:6938603-6949018	inner
CUST_29768_PI429285431	0.8934412	A	1.8388177	A	0.519294013850092	0	lncRNA	31531-1_{1..497}	n333462|BC022287|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090565|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090565|1.7550000|-0.1802656	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333462|BC022287|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000090565|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000090565|1.7550000|-0.1802656	chr2	 88422555	 88423051	-	NA	NA	NA	NA	SMYD1	NA	chr2:88412555-88412903	inner
CUST_11313_PI429285431	5.391386	P	5.89719	P	0.70426778655817	0	lncRNA	12876-1_{1..823}	lnc-EIF5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF5-1:1	chr14	103784587	103785409	+	lnc-EIF5-1	lnc-EIF5-1:1	XLOC_010943	linc-EIF5	NA	NA	NA	inter
CUST_27381_PI429285431	1.3178277	A	0.9339712	A	1.30482515468567	0	lncRNA	28943-1_{1..1980}	n324543|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000076351|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000076351|-1.0901400|-0.3278337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324543|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000076351|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000076351|-1.0901400|-0.3278337	chr6	 31129962	 31131941	+	NA	NA	NA	NA	TCF19	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_POU5F1:range=chr6_cox_hap2:2647131-26484825'pad=0,hg19_refFlat_POU5F1:range=chr6_cox_hap2:2647131-26484825'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_POU5F1:range=chr6_ssto_hap7:2467315-24686665'pad=0,hg19_refFlat_POU5F1:range=chr6_ssto_hap7:2467315-24686665'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_POU5F1:range=chr6_ssto_hap7:2467315-24733505'pad=0,hg19_refFlat_POU5F1:range=chr6_ssto_hap7:2467315-24733505'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50;hg19_refFlat_POU5F1:range=chr6_cox_hap2:2647131-26531685'pad=0,hg19_refFlat_POU5F1:range=chr6_cox_hap2:2647131-26531685'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50;hg19_refFlat_POU5F1:range=chr6:31132378-311383975'pad=0,hg19_refFlat_POU5F1:range=chr6:31132378-311383975'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_POU5F1:range=chr6_dbb_hap3:2429502-24355395'pad=0,hg19_refFlat_POU5F1:range=chr6_dbb_hap3:2429502-24355395'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_POU5F1:range=chr6_qbl_hap6:2428230-24342665'pad=0,hg19_refFlat_POU5F1:range=chr6_qbl_hap6:2428230-24342665'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50;hg19_refFlat_POU5F1:range=chr6_qbl_hap6:2428230-24295815'pad=0,hg19_refFlat_POU5F1:range=chr6_qbl_hap6:2428230-24295815'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_POU5F1:range=chr6_dbb_hap3:2429502-24308535'pad=0,hg19_refFlat_POU5F1:range=chr6_dbb_hap3:2429502-24308535'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_POU5F1:range=chr6:31132378-311337195'pad=0,hg19_refFlat_POU5F1:range=chr6:31132378-311337195'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_POU5F1:range=chr6_mcf_hap5:2514301-25156525'pad=0,hg19_refFlat_POU5F1:range=chr6_mcf_hap5:2514301-25156525'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_POU5F1:range=chr6_mcf_hap5:2514301-25203395'pad=0,hg19_refFlat_POU5F1:range=chr6_mcf_hap5:2514301-25203395'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_POU5F1B:range=chr8:128428112-1284291915'pad=0,hg19_refFlat_POU5F1B:range=chr8:128428112-1284291915'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60;hg19_refFlat_POU5F1:range=chr6_mann_hap4:2480722-24820735'pad=0,hg19_refFlat_POU5F1:range=chr6_mann_hap4:2480722-24820735'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50;hg19_refFlat_POU5F1:range=chr6_mann_hap4:2480722-24867605'pad=0,hg19_refFlat_POU5F1:range=chr6_mann_hap4:2480722-24867605'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.94;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80chr6:31126303-31131992"	NA	inner
CUST_11949_PI429285431	0.8964606	A	0.90166235	A	0.996400913945962	0	lncRNA	13529-1_{1..500}	lnc-NETO1-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NETO1-1:13	chr18	 70830034	 70830533	-	lnc-NETO1-1	lnc-NETO1-1:13	XLOC_012877	linc-NETO1-3	NA	NA	NA	inter
CUST_22683_PI429285431	0.9019874	A	0.9111166	A	0.993692099623582	0	lncRNA	24266-1_{1..570}	lnc-ZIC4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZIC4-3:1	chr3	147088420	147088989	-	lnc-ZIC4-3	lnc-ZIC4-3:1	ENSG00000243620.1	RP11-649A16.1	NA	NA	NA	inter
CUST_13165_PI429285431	4.1842117	P	3.793572	P	1.31097456932211	0	lncRNA	14794-1_{1..426}	lnc-MDM1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MDM1-1:7	chr12	 68828743	 68829168	-	lnc-MDM1-1	lnc-MDM1-1:7	XLOC_010117	linc-MDM1-1	NA	NA	NA	inter
CUST_24215_PI429285431	0.89529526	A	0.9100051	A	0.989855719728259	0	lncRNA	25766-1_{1..569}	lnc-KLHL25-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL25-3:1	chr15	 86270223	 86270791	-	lnc-KLHL25-3	lnc-KLHL25-3:1	ENSG00000259544.1	RP11-158M2.2	AKAP13	NA	chr15:86260223-86280458	inner
CUST_6937_PI429285431	4.8414907	P	3.451111	P	2.62147665809053	0	lncRNA	6886-1_{1..1930}	"transcript_id ""ENST00000416615.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416615.1"" | genecode_v17"	chr22	 21655286	 21657215	-	ENSG00000206142.5	ENST00000416615.1	FAM230C	FAM230C-002	RIMBP3B	NA	chr22:21645286-21689331	inter
CUST_41319_PI429285431	2.303855	P	2.099482	A	1.15218549437312	0	lncRNA	42358-1_{1..87}	ENST00000582784 ncrna:miRNA chromosome:GRCh37:15:66011584:66011670:-1 gene:ENSG00000264737 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582784 ncrna:miRNA chromosome:GRCh37:15:66011584:66011670:-1 gene:ENSG00000264737 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 66011584	 66011670	-	ENSG00000264737	ENST00000582784	NA	NA	DENND4A	NA	chr15:66001584-66021670	inner
CUST_11_PI429285431	6.916257	P	6.82318	P	1.0666427085223	0	lncRNA	10-1_{1..2661}	"transcript_id ""ENST00000457364.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457364.2"" | genecode_v17"	chr5	180751371	180754031	+	ENSG00000238035.4	ENST00000457364.2	AC138035.2	AC138035.2-201	LOC100286914	NA	chr5:180755977-180765068	inter
CUST_48479_PI429285431	3.2971723	A	3.451624	A	0.898473775297914	0	lncRNA	52332-1_{1..469}	hg19_lincRNAsTranscripts_TCONS_l2_00000862 range=chr1:224770788-224785257 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000862 range=chr1:224770788-224785257 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	224770788	224771256	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33821_PI429285431	0.906201	A	0.9162126	A	0.993084510501684	0	lncRNA	35369-1_{1..1721}	n340607|AK001007|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3069|NULL|0.2922610|-0.2551696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340607|AK001007|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3069|NULL|0.2922610|-0.2551696	chr5	125832579	125834299	+	NA	NA	NA	NA	GRAMD3	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60chr5:125822579-125829853"	NA	inter
CUST_6913_PI429285431	6.188877	P	6.56944	P	0.768137772631873	0	lncRNA	6864-1_{1..971}	"transcript_id ""ENST00000383140.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000383140.3"" | genecode_v17"	chr22	 17100505	 17101475	+	ENSG00000100181.16	ENST00000383140.3	TPTEP1	TPTEP1-004	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70"	NA	inter
CUST_44651_PI429285431	4.9809136	P	4.7962365	P	1.136562562488	0	lncRNA	49214-1_{1..3000}	"gi|397739076|ref|NR_073064.1| Homo sapiens exocyst complex component 2 (EXOC2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397739076|ref|NR_073064.1| Homo sapiens exocyst complex component 2 (EXOC2), transcript variant 2, non-coding RNA"	Chr6	   485138	   488137	-	55770	NR_073064.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001602	4.5854006	P	5.3085485	P	0.605774225197807	0	lncRNA	THC2750242	NA	NA	NA	NA	XLOC_001126	NA	NA	THC2750242	NA	"BROAD Institute lincRNA (XLOC_001126), lincRNA [TCONS_00001758]"	chr1:185532277-185532218	hs|1q25.3	Agilent_HUMAN_G3V2	THC2750242	THC2750242	chr1	185532218	185532277	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002318	0.881866	A	0.886866	A	0.996540262827868	0	lncRNA	TCONS_00003947	NA	NA	NA	NA	XLOC_001765	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001765), lincRNA [TCONS_00003947]"	chr2:177504111-177504170	hs|2q31.1	Agilent_HUMAN_G3V2	TCONS_00003947	TCONS_00003947	chr2	177504111	177504170	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15523_PI429285431	0.88045913	A	1.0908064	A	0.864329154268088	0	lncRNA	17209-1_{1..847}	lnc-C15orf2-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-2:5	chr15	 24758127	 24758973	+	lnc-C15orf2-2	lnc-C15orf2-2:5	XLOC_011181	linc-C15orf2-1	NA	NA	NA	inter
CUST_38296_PI429285431	0.9713533	A	1.3523071	A	0.767929726177893	0	lncRNA	39349-1_{1..591}	n381961|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uid.2||-1.0943500|-0.1762133	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n381961|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uid.2||-1.0943500|-0.1762133	chr12	129595537	129596127	+	NA	NA	NA	NA	TMEM132D	NA	chr12:129585537-129607839	inner
CUST_25803_PI429285431	0.8801844	A	0.88529146	A	0.996466313975904	0	lncRNA	27324-1_{1..680}	lnc-ATXN7-7:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATXN7-7:6	chr3	 64568949	 64569628	+	lnc-ATXN7-7	lnc-ATXN7-7:6	ENSG00000241158.1	ADAMTS9-AS1	ADAMTS9	NA	chr3:64558949-64579188	inner
LNCA_21_P0007810	3.5070467	P	2.8185315	A	1.61162400547265	0	lncRNA	TCONS_00021007	NA	NA	NA	NA	XLOC_010268	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010268), lincRNA [TCONS_00021007]"	chr12:131895651-131895592	hs|12q24.33	Agilent_HUMAN_G3V2	TCONS_00021007	TCONS_00021007	chr12	131895592	131895651	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25502_PI429285431	0.912704	A	0.91797936	A	0.996350076313543	0	lncRNA	27032-1_{1..523}	lnc-RP11-110I1.12.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-110I1.12.1-2:1	chr11	118875189	118875711	-	lnc-RP11-110I1.12.1-2	lnc-RP11-110I1.12.1-2:1	ENSG00000254428.1	RP11-110I1.11	CCDC84	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.82;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10chr11:118868852-118885603"	NA	inner
CUST_687_PI429285431	2.9899266	A	3.300924	P	0.806084284202786	0	lncRNA	680-1_{1..918}	"transcript_id ""ENST00000590865.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590865.1"" | genecode_v17"	chr2	  6758400	  6759317	-	ENSG00000236172.2	ENST00000590865.1	AC097517.2	AC097517.2-038	NA	NA	NA	inter
CUST_17362_PI429285431	1.8970772	A	2.579472	A	0.623130051456359	0	lncRNA	19082-1_{1..313}	lnc-MBNL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBNL2-1:1	chr13	 97799652	 97799964	+	lnc-MBNL2-1	lnc-MBNL2-1:1	XLOC_010475	linc-MBNL2	NA	NA	NA	inter
CUST_11732_PI429285431	6.42084	P	6.7597775	P	0.790623367009404	0	lncRNA	13312-1_{1..520}	lnc-ERI1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERI1-2:3	chr8	  9013662	  9014181	+	lnc-ERI1-2	lnc-ERI1-2:3	XLOC_006704	linc-TNKS-3	PPP1R3B	NA	chr8:9003662-9009152	inter
CUST_17258_PI429285431	0.8849149	A	0.87956107	A	1.00371788642668	0	lncRNA	18976-1_{1..414}	lnc-CKAP2L-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CKAP2L-1:6	chr2	113401536	113401949	-	lnc-CKAP2L-1	lnc-CKAP2L-1:6	XLOC_002275	linc-RGPD8-2	SLC20A1	NA	chr2:113403434-113411580	inter
CUST_26841_PI429285431	5.369071	P	5.5577335	P	0.877418785596245	0	lncRNA	28355-1_{1..1715}	n323912|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055705|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055705|-0.6600800|-0.2167413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323912|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055705|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055705|-0.6600800|-0.2167413	chrX	  9177959	  9179673	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42923_PI429285431	0.88214856	A	0.887185	A	0.996515092249514	0	lncRNA	46028-1_{1..75}	ENST00000410253 ncrna:snoRNA chromosome:GRCh37:14:101464804:101464878:1 gene:ENSG00000222185 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410253 ncrna:snoRNA chromosome:GRCh37:14:101464804:101464878:1 gene:ENSG00000222185 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101464804	101464878	+	ENSG00000222185	ENST00000410253	NA	NA	NA	NA	NA	inter
CUST_26133_PI429285431	9.8568535	P	8.588833	P	2.40830898312762	0	lncRNA	27644-1_{1..330}	lnc-DST-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DST-1:1	chr6	 56196586	 56196915	-	lnc-DST-1	lnc-DST-1:1	ENSG00000227602.1	RP3-445N2.1	NA	NA	NA	inter
LNCA_21_P0009139	0.88383925	A	0.8845301	A	0.99952125390581	0	lncRNA	TCONS_00025080	NA	NA	NA	NA	XLOC_012043	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012043), lincRNA [TCONS_00025080]"	chr16:86230442-86230383	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00025080	TCONS_00025080	chr16	 86230383	 86230442	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35467_PI429285431	2.6613452	A	2.4939291	A	1.12304528245047	0	lncRNA	36873-1_{1..3000}	n342553|D83784|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5052|NULL|1.9121900|-0.2184661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342553|D83784|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5052|NULL|1.9121900|-0.2184661	chr20	 30780306	 30783305	-	NA	NA	NA	NA	POFUT1	NA	chr20:30795696-30805529	inner
CUST_48444_PI429285431	1.1427505	A	1.3219073	A	0.883219053179853	0	lncRNA	52298-1_{1..233}	hg19_lincRNAsTranscripts_TCONS_l2_00000709 range=chr1:181205453-181206811 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000709 range=chr1:181205453-181206811 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	181205453	181205685	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012139	0.8847334	A	0.885782	A	0.999273429946409	0	lncRNA	TCONS_l2_00016522	NA	NA	NA	NA	XLOC_l2_008802	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008802), lincRNA [TCONS_l2_00016522]"	chr20:23900805-23900746	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_l2_00016522	TCONS_l2_00016522	chr20	 23900746	 23900805	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27024_PI429285431	0.90797335	A	1.2884879	A	0.768163569421183	0	lncRNA	28554-1_{1..835}	n324129|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001153|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001153|-1.1730600|-0.2073983	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324129|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001153|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001153|-1.1730600|-0.2073983	chr9	 34654779	 34655613	-	NA	NA	NA	NA	IL11RA	"hg19_refFlat_IL11RA:range=chr9:34655215-346614955'pad=0,hg19_refFlat_IL11RA:range=chr9:34655215-346614955'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70chr9:34652182-34661884"	NA	inter
LNCA_21_P0014370	7.43793	P	7.4112263	P	1.01868195872975	0	lncRNA	XR_109488	XR_109488	XR_109488	NA	Hs.373631	LOC100505928	uncharacterized LOC100505928	NA	THC2697455	NA	"PREDICTED: Homo sapiens hypothetical LOC100505928 (LOC100505928), miscRNA [XR_109488]"	chr19:49915431-49915372	hs|19q13.33	Agilent_HUMAN_G3V2	XR_109488	XR_109488	chr19	 49915372	 49915431	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31574_PI429285431	0.9072745	A	0.94371235	A	0.975059491431262	0	lncRNA	33331-1_{1..2600}	n338075|BC043257|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|462|NULL|-1.1807900|-0.3200295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n338075|BC043257|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|462|NULL|-1.1807900|-0.3200295	chr15	 82380934	 82383533	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43853_PI429285431	6.4641504	P	7.0302706	P	0.675430765537186	0	lncRNA	48575-1_{1..3000}	"gi|305632832|ref|NR_036586.1| Homo sapiens uncharacterized LOC400958 (LOC400958), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|305632832|ref|NR_036586.1| Homo sapiens uncharacterized LOC400958 (LOC400958), non-coding RNA"	Chr2	 65128974	 65131973	-	400958	NR_036586.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60"	NA	inter
CUST_39517_PI429285431	3.3751643	P	3.4925048	P	0.921885511936401	0	lncRNA	40463-1_{1..629}	n387324|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011cgm.1||0.2935710|-0.4690591	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387324|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011cgm.1||0.2935710|-0.4690591	chr4	123651343	123651971	-	NA	NA	NA	NA	BBS12	NA	chr4:123653857-123663613	inter
LNCA_21_P0011274	3.7037368	P	3.498585	P	1.15280763853992	0	lncRNA	TCONS_l2_00008281	NA	NA	NA	NA	XLOC_l2_004546	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004546), lincRNA [TCONS_l2_00008281]"	chr14:105543393-105543334	hs|14q32.33	Agilent_HUMAN_G3V2	TCONS_l2_00008281	TCONS_l2_00008281	chr14	105543334	105543393	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2473_PI429285431	0.89967483	A	1.1955464	A	0.814580074487814	0	lncRNA	2465-1_{1..568}	"transcript_id ""ENST00000432823.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432823.2"" | genecode_v17"	chr6	  6692977	  6693544	-	ENSG00000226281.2	ENST00000432823.2	RP1-80N2.2	RP1-80N2.2-001	NA	NA	NA	inter
CUST_36639_PI429285431	5.9715805	P	6.1819143	P	0.864337224281313	0	lncRNA	37829-1_{1..1109}	n345132|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_681|NULL|-1.2986600|-0.1051492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345132|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_681|NULL|-1.2986600|-0.1051492	chr11	  2228755	  2229863	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3292_PI429285431	4.1622477	P	4.8342624	P	0.627629600525327	0	lncRNA	3270-1_{1..1195}	"transcript_id ""ENST00000523703.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523703.1"" | genecode_v17"	chr8	125204912	125206106	-	ENSG00000214803.3	ENST00000523703.1	RP11-37N22.1	RP11-37N22.1-001	NA	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.41;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90"	NA	inter
CUST_5210_PI429285431	0.91382396	A	0.97582453	A	0.957934839748417	0	lncRNA	5150-1_{1..709}	"transcript_id ""ENST00000558436.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558436.1"" | genecode_v17"	chr15	 67223885	 67224593	-	ENSG00000259289.1	ENST00000558436.1	RP11-798K3.3	RP11-798K3.3-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10"	NA	inter
CUST_48925_PI429285431	0.8994704	A	0.90319777	A	0.997419718656982	0	lncRNA	52768-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00018865 range=chr3:131080924-131089110 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018865 range=chr3:131080924-131089110 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	131083924	131086923	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40"	NA	inter
CUST_43760_PI429285431	0.8887898	A	0.9024772	A	0.990557480505938	0	lncRNA	48497-1_{1..1540}	"gi|213511902|ref|NR_015407.1| Homo sapiens uncharacterized LOC339535 (LOC339535), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|213511902|ref|NR_015407.1| Homo sapiens uncharacterized LOC339535 (LOC339535), non-coding RNA"	Chr1	238643684	238645223	-	339535	NR_015407.1	NA	NA	NA	NA	NA	inter
CUST_6589_PI429285431	1.1723979	A	1.3389133	A	0.890992133824754	0	lncRNA	6537-1_{1..748}	"transcript_id ""ENST00000591484.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591484.1"" | genecode_v17"	chr19	 55728050	 55728797	+	ENSG00000267649.1	ENST00000591484.1	CTD-2587H24.10	CTD-2587H24.10-002	PTPRH	NA	chr19:55718050-55720874	inter
CUST_46827_PI429285431	6.3654065	P	6.765505	P	0.757806542249296	0	lncRNA	50967-1_{1..3000}	"gi|222144295|ref|NR_026697.1| Homo sapiens family with sequence similarity 134, member C (FAM134C), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|222144295|ref|NR_026697.1| Homo sapiens family with sequence similarity 134, member C (FAM134C), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_026697.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60"	NA	Unknown
LNCA_21_P0005302	0.90205246	A	0.9263172	A	0.983321614231555	0	lncRNA	TCONS_00013163	NA	NA	NA	NA	XLOC_006432	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006432), lincRNA [TCONS_00013163]"	chr7:46472646-46472587	hs|7p12.3	Agilent_HUMAN_G3V2	TCONS_00013163	TCONS_00013163	chr7	 46472587	 46472646	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006211	0.9026774	A	0.9267419	A	0.983458104605163	0	lncRNA	TCONS_00016129	NA	NA	NA	NA	XLOC_007516	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007516), lincRNA [TCONS_00016129]"	chr9:113100839-113100898	hs|9q31.3	Agilent_HUMAN_G3V2	TCONS_00016129	TCONS_00016129	chr9	113100839	113100898	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24985_PI429285431	1.3740578	A	2.3771417	P	0.498932343221219	0	lncRNA	26525-1_{1..507}	lnc-OSBPL1A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OSBPL1A-2:1	chr18	 21700956	 21701462	-	lnc-OSBPL1A-2	lnc-OSBPL1A-2:1	ENSG00000264924.1	RP11-799B12.2	TTC39C	NA	chr18:21690956-21710967	inner
CUST_36751_PI429285431	1.8543224	A	1.4335647	A	1.33863041570618	0	lncRNA	37924-1_{1..1050}	n345231|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_780|NULL|-1.3181200|-0.4519839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345231|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_780|NULL|-1.3181200|-0.4519839	chr13	 79885961	 79887010	+	NA	NA	NA	NA	RBM26	NA	chr13:79894089-79899133	inter
LNCA_21_P0013215	4.433624	P	4.460183	P	0.981759120063499	0	lncRNA	TCONS_l2_00025933	NA	NA	NA	NA	XLOC_l2_013443	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013443), lincRNA [TCONS_l2_00025933]"	chr7:63611167-63611226	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025933	TCONS_l2_00025933	chr7	 63611167	 63611226	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35341_PI429285431	1.659251	A	2.196604	A	0.689033962372565	0	lncRNA	36750-1_{1..2496}	n342382|AK092065|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4874|NULL|-0.9885780|-0.3261509	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342382|AK092065|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4874|NULL|-0.9885780|-0.3261509	chr13	 30918808	 30921303	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF182:range=chrX:47835566-478479955'pad=0,hg19_refFlat_ZNF182:range=chrX:47835566-478479955'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40"	NA	inter
CUST_45680_PI429285431	6.5251603	P	6.7140636	P	0.87727234798746	0	lncRNA	50055-1_{1..2974}	"gi|254750710|ref|NR_028134.1| Homo sapiens guanylate cyclase 2G homolog (mouse), pseudogene (GUCY2GP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254750710|ref|NR_028134.1| Homo sapiens guanylate cyclase 2G homolog (mouse), pseudogene (GUCY2GP), non-coding RNA"	Chr10	114067936	114070909	-	390003	NR_028134.1	NA	NA	NA	NA	NA	inter
CUST_37746_PI429285431	1.1069424	A	0.9555388	A	1.11064949903602	0	lncRNA	38839-1_{1..2535}	n346248|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1798|NULL|-1.2948300|-0.3185454	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346248|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1798|NULL|-1.2948300|-0.3185454	chr13	 42968368	 42970902	+	NA	NA	NA	NA	NA	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00"	NA	inter
CUST_17220_PI429285431	1.0526774	A	0.920857	A	1.09567535817154	0	lncRNA	18934-1_{1..348}	lnc-PELI2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PELI2-3:1	chr14	 56515172	 56515519	+	lnc-PELI2-3	lnc-PELI2-3:1	XLOC_010838	linc-PELI2	NA	NA	NA	inter
CUST_27704_PI429285431	6.5374603	P	6.752658	P	0.861428105652748	0	lncRNA	29283-1_{1..1882}	n324915|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000276287|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000276287|1.1606500|-0.2080936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324915|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000276287|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000276287|1.1606500|-0.2080936	chr20	 61204001	 61205882	+	NA	NA	NA	NA	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90"	NA	inter
LNCA_33_P3330428	4.765299	P	5.0225315	P	0.836691393377573	0	lncRNA	ENST00000370795	XR_109635	XR_109635	NA	Hs.711994	NA	NA	ENST00000370795	THC2487349	NA	"PREDICTED: Homo sapiens hypothetical FLJ44790 (FLJ44790), miscRNA [XR_109635]"	chr20:60808451-60808510	hs|20q13.33	Agilent_HUMAN_G3V2	ENST00000370795	ENST00000370795	chr20	 60808451	 60808510	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21956_PI429285431	0.91307014	A	0.97741675	A	0.956378358919257	0	lncRNA	23564-1_{1..566}	lnc-ANTXR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANTXR2-1:1	chr4	 81110903	 81111468	-	lnc-ANTXR2-1	lnc-ANTXR2-1:1	ENSG00000248719.1	RP11-377G16.2	PRDM8	NA	chr4:81106424-81121323	inner
CUST_34253_PI429285431	0.9186324	A	0.94751996	A	0.980175804786415	0	lncRNA	35756-1_{1..1777}	n341110|BC043242|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3576|NULL|-0.0031930|-0.2841090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341110|BC043242|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3576|NULL|-0.0031930|-0.2841090	chr11	106122133	106123909	+	NA	NA	NA	NA	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70"	NA	inter
CUST_1399_PI429285431	0.9225331	A	0.9604945	A	0.974030328844734	0	lncRNA	1388-1_{1..766}	"transcript_id ""ENST00000462792.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000462792.1"" | genecode_v17"	chr3	 87780552	 87781317	-	ENSG00000239572.1	ENST00000462792.1	RP11-451B8.1	RP11-451B8.1-001	NA	NA	NA	inter
CUST_47691_PI429285431	2.5338044	A	1.0206971	A	2.85424128685966	0	lncRNA	51665-1_{1..3000}	"gi|385137101|ref|NR_047639.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 69, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137101|ref|NR_047639.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 69, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047639.1	NA	NA	NA	NA	NA	inter
CUST_32010_PI429285431	5.2030644	P	5.3581924	P	0.898052691564742	0	lncRNA	33731-1_{1..1549}	n338575|BC036863|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|981|NULL|3.9934300|-0.0623354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338575|BC036863|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|981|NULL|3.9934300|-0.0623354	chr19	 38397888	 38399436	+	NA	NA	NA	NA	SIPA1L3	NA	chr19:38397868-38583266	inner
CUST_27095_PI429285431	0.91424584	A	0.926081	A	0.991830049160266	0	lncRNA	28628-1_{1..674}	n324206|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327706|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327706|-1.2069300|-0.1883977	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324206|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327706|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327706|-1.2069300|-0.1883977	chr7	 30182527	 30183200	-	NA	NA	NA	NA	C7orf41	NA	chr7:30174552-30195155	inner
CUST_41654_PI429285431	0.896317	A	0.91078365	A	0.990022590269649	0	lncRNA	43070-1_{1..60}	ENST00000581331 ncrna:miRNA chromosome:GRCh37:2:182170320:182170379:-1 gene:ENSG00000266705 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581331 ncrna:miRNA chromosome:GRCh37:2:182170320:182170379:-1 gene:ENSG00000266705 gene_biotype:miRNA transcript_biotype:miRNA	chr2	182170320	182170379	-	ENSG00000266705	ENST00000581331	NA	NA	NA	NA	NA	inter
CUST_15054_PI429285431	8.796321	P	9.124798	P	0.796376745748847	0	lncRNA	16717-1_{1..1381}	lnc-C9orf150-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf150-1:1	chr9	 12768922	 12770302	+	lnc-C9orf150-1	lnc-C9orf150-1:1	XLOC_007283	linc-C9orf150	C9orf150	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90chr9:12775012-12780158"	NA	inter
CUST_19669_PI429285431	0.8823519	A	0.88791054	A	0.996154457465998	0	lncRNA	21325-1_{1..2810}	lnc-LEF1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LEF1-3:2	chr4	108853127	108855936	-	lnc-LEF1-3	lnc-LEF1-3:2	ENSG00000245293.2	RP11-286E11.1	CYP2U1	"hg19_refFlat_CYP2U1:range=chr4:108852800-1088715795'pad=0,hg19_refFlat_CYP2U1:range=chr4:108852800-1088715795'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.10chr4:108852717-108863275"	NA	inner
CUST_16195_PI429285431	1.4043033	A	1.3276323	A	1.05458179709299	0	lncRNA	17900-1_{1..1155}	lnc-ACTR3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ACTR3-1:2	chr2	114740241	114741395	+	lnc-ACTR3-1	lnc-ACTR3-1:2	XLOC_001634	linc-DPP10	NA	NA	NA	inter
CUST_11500_PI429285431	0.8887079	A	1.788462	A	0.535978078208609	0	lncRNA	13069-1_{1..332}	lnc-SLITRK1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK1-2:1	chr13	 84240927	 84241258	-	lnc-SLITRK1-2	lnc-SLITRK1-2:1	XLOC_010673	linc-SPRY2-3	NA	NA	NA	inter
CUST_34004_PI429285431	0.8801817	A	0.8838929	A	0.997430897989259	0	lncRNA	35541-1_{1..2301}	n340818|BC041474|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3282|NULL|-0.9328720|-0.1962244	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340818|BC041474|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3282|NULL|-0.9328720|-0.1962244	chr17	 71509823	 71512123	+	NA	NA	NA	NA	SDK2	NA	chr17:71499823-71524909	inner
CUST_20830_PI429285431	1.0845182	A	1.3887346	A	0.809881984612339	0	lncRNA	22461-1_{1..304}	lnc-PPIE-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPIE-2:1	chr1	 40099361	 40099664	+	lnc-PPIE-2	lnc-PPIE-2:1	ENSG00000225903.1	RP1-144F13.3	HEYL	NA	chr1:40089361-40105348	inner
LNCA_21_P0006747	0.8836074	A	0.8902272	A	0.995422015357749	0	lncRNA	ENST00000442783	NA	NA	NA	NA	XLOC_008779	NA	ENST00000442783	NA	NA	"BROAD Institute lincRNA (XLOC_008779), lincRNA [TCONS_00017953]"	chr10:36185988-36185929	hs|10p11.21	Agilent_HUMAN_G3V2	ENST00000442783	ENST00000442783	chr10	 36185929	 36185988	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1574_PI429285431	0.8957556	A	0.8887079	A	1.00489704490663	0	lncRNA	1563-1_{1..549}	"transcript_id ""ENST00000417383.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417383.1"" | genecode_v17"	chr3	178052813	178053361	-	ENSG00000223930.1	ENST00000417383.1	RP11-33A14.1	RP11-33A14.1-005	NA	NA	NA	inter
CUST_8286_PI429285431	9.4362755	P	9.489143	P	0.964018341048895	0	lncRNA	9871-1_{1..855}	lnc-ABCB4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ABCB4-1:2	chr7	 86974359	 86975213	-	lnc-ABCB4-1	lnc-ABCB4-1:2	ENSG00000182165	TP53TG1	CROT	NA	chr7:86974951-86984831	inter
CUST_40531_PI429285431	1.6992539	A	1.7232716	A	0.983490007803359	0	lncRNA	41292-2_{3001..6000}	n409638|NR_034022|lncRNA|Homosapiens||RefGeneNoncode|NR_034022||2.9666000|-0.3061889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n409638|NR_034022|lncRNA|Homosapiens||RefGeneNoncode|NR_034022||2.9666000|-0.3061889	chr7	  7118400	  7121399	-	NA	NA	NA	NA	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.61;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00"	NA	inter
LNCA_21_P0005532	2.0906029	A	1.8003843	A	1.22282554859599	0	lncRNA	TCONS_00013978	NA	NA	NA	NA	XLOC_006617	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006617), lincRNA [TCONS_00013978]"	chr7:134944989-134944930	hs|7q33	Agilent_HUMAN_G3V2	TCONS_00013978	TCONS_00013978	chr7	134944930	134944989	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14590_PI429285431	5.623858	P	6.5808043	P	0.515146151225074	0	lncRNA	16257-1_{1..216}	lnc-ZNF169-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF169-1:1	chr9	 97076744	 97076959	+	lnc-ZNF169-1	lnc-ZNF169-1:1	XLOC_007467	linc-HIATL1-3	FAM22F	NA	chr9:97080478-97086871	inter
CUST_8861_PI429285431	2.2103686	A	2.1692019	A	1.02894559325483	0	lncRNA	10400-1_{1..2995}	lnc-LCE5A-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LCE5A-2:3	chr1	152336463	152339457	+	lnc-LCE5A-2	lnc-LCE5A-2:3	ENSG00000237975	RP1-14N1.2	FLG2	"hg19_refFlat_FLG:range=chr1:152275176-1522879325'pad=0,hg19_refFlat_FLG:range=chr1:152275176-1522879325'pad=0 3'pad=0 strand=- repeatMasking=none,-94.80chr1:152326463-152332482"	NA	inter
LNCA_21_P0007005	0.8799163	A	1.1652138	A	0.820572380076731	0	lncRNA	TCONS_00018557	NA	NA	NA	NA	XLOC_008874	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008874), lincRNA [TCONS_00018557]"	chr10:83552651-83552592	hs|10q23.1	Agilent_HUMAN_G3V2	TCONS_00018557	TCONS_00018557	chr10	 83552592	 83552651	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43549_PI429285431	1.1245359	A	1.4617128	A	0.791588797093883	0	lncRNA	48326-2_{3001..4068}	"gi|215277002|ref|NR_024537.1| Homo sapiens glutathione S-transferase mu 3 (brain) (GSTM3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|215277002|ref|NR_024537.1| Homo sapiens glutathione S-transferase mu 3 (brain) (GSTM3), transcript variant 2, non-coding RNA"	Chr1	110279554	110280621	-	2947	NR_024537.1	NA	NA	NA	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.24;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-55.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.91;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80"	NA	inter
CUST_18944_PI429285431	0.887554	A	1.198911	A	0.805883388117495	0	lncRNA	20635-1_{1..1021}	lnc-FAM40B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM40B-1:1	chr7	129152088	129153108	+	lnc-FAM40B-1	lnc-FAM40B-1:1	ENSG00000240204	RP11-305M3.3	LOC100287482	NA	chr7:129142320-129152773	inner
CUST_10932_PI429285431	1.4027088	A	0.9183891	A	1.39892604922153	0	lncRNA	12473-1_{1..1091}	lnc-CHMP7-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHMP7-1:4	chr8	 23085579	 23086669	+	lnc-CHMP7-1	lnc-CHMP7-1:4	XLOC_006742	linc-CHMP7	TNFRSF10A	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30chr8:23075579-23082680"	NA	inter
LNCA_21_P0007868	5.61786	P	5.957045	P	0.79048774409952	0	lncRNA	ENST00000544657	NA	NA	NA	NA	XLOC_010001	NA	ENST00000544657	NA	NA	"BROAD Institute lincRNA (XLOC_010001), lincRNA [TCONS_00021281]"	chr12:7281737-7281678	hs|12p13.31	Agilent_HUMAN_G3V2	ENST00000544657	ENST00000544657	chr12	  7281678	  7281737	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005603	1.489017	A	0.885009	A	1.51993328467791	0	lncRNA	TCONS_00014311	NA	NA	NA	NA	XLOC_006469	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006469), lincRNA [TCONS_00014311]"	chr7:63496734-63496675	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_00014311	TCONS_00014311	chr7	 63496675	 63496734	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50658_PI429285431	0.88564926	A	0.90436304	A	0.98711236223518	0	lncRNA	54334-1_{1..1236}	hg19_lincRNAsTranscripts_TCONS_l2_00002992 range=chr10:38701153-38712064 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002992 range=chr10:38701153-38712064 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 38701153	 38702388	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40"	NA	inter
CUST_47769_PI429285431	1.2065933	A	0.8807166	A	1.25342589175967	0	lncRNA	51702-1_{1..3000}	"gi|385137060|ref|NR_047598.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 28, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137060|ref|NR_047598.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 28, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047598.1	NA	NA	NA	NA	NA	inter
CUST_44616_PI429285431	1.9210007	A	1.2353414	A	1.60843685623069	0	lncRNA	49186-1_{1..3000}	"gi|384381493|ref|NR_047578.1| Homo sapiens glutamate receptor, ionotropic, AMPA 1 (GRIA1), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384381493|ref|NR_047578.1| Homo sapiens glutamate receptor, ionotropic, AMPA 1 (GRIA1), transcript variant 8, non-coding RNA"	Chr5	152870084	152873083	+	2890	NR_047578.1	NA	NA	NA	NA	NA	inter
CUST_11955_PI429285431	0.886903	A	0.89410824	A	0.995018158947825	0	lncRNA	13535-1_{1..807}	lnc-MC4R-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MC4R-1:1	chr18	 57844773	 57845579	-	lnc-MC4R-1	lnc-MC4R-1:1	XLOC_012859	linc-CCBE1	NA	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80"	NA	inter
CUST_10436_PI429285431	1.2616111	A	0.88650644	A	1.29693363700883	0	lncRNA	11964-1_{1..358}	lnc-AC009365.3.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC009365.3.1-1:3	chr7	132346750	132347107	+	lnc-AC009365.3.1-1	lnc-AC009365.3.1-1:3	XLOC_006254	linc-EXOC4-4	NA	NA	NA	inter
CUST_18674_PI429285431	1.3217566	A	1.1764951	A	1.10593109399863	0	lncRNA	20375-1_{1..768}	lnc-CCDC150-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCDC150-1:1	chr2	197127775	197128542	+	lnc-CCDC150-1	lnc-CCDC150-1:1	ENSG00000229056	AC020571.3	HECW2	NA	chr2:197117775-197138283	inner
CUST_7805_PI429285431	2.1079602	A	2.8743563	A	0.58788419608873	0	lncRNA	9429-1_{1..1716}	lnc-DIAPH1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DIAPH1-2:1	chr5	140892104	140893819	-	lnc-DIAPH1-2	lnc-DIAPH1-2:1	ENSG00000248581	ENST00000504978	PCDHGA1	"hg19_refFlat_PCDHGB7:range=chr5:140797427-1408907405'pad=0,hg19_refFlat_PCDHGB7:range=chr5:140797427-1408907405'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80;hg19_refFlat_PCDHGB7:range=chr5:140797427-1407998535'pad=0,hg19_refFlat_PCDHGB7:range=chr5:140797427-1407998535'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80chr5:140882104-140892546"	NA	inner
CUST_38914_PI429285431	3.748339	P	4.021655	P	0.82741556366689	0	lncRNA	39903-1_{1..2456}	n384990|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003prp.2||-0.9957920|-0.3589154	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384990|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003prp.2||-0.9957920|-0.3589154	chr6	107218006	107220461	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21567_PI429285431	9.5869465	P	9.824921	P	0.847934951965587	0	lncRNA	23182-1_{1..714}	lnc-SLA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLA2-2:1	chr20	 35232911	 35233624	-	lnc-SLA2-2	lnc-SLA2-2:1	ENSG00000259716.1	RP5-977B1.11	SLA2	"hg19_refFlat_MYL9:range=chr20:35173288-351776525'pad=0,hg19_refFlat_MYL9:range=chr20:35173288-351776525'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00chr20:35240922-35242932"	NA	inner
CUST_42806_PI429285431	5.760357	P	6.0858765	P	0.798010978871779	0	lncRNA	45803-1_{1..140}	ENST00000516057 ncrna:snoRNA chromosome:GRCh37:1:15868660:15868799:1 gene:ENSG00000251866 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516057 ncrna:snoRNA chromosome:GRCh37:1:15868660:15868799:1 gene:ENSG00000251866 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 15868660	 15868799	+	ENSG00000251866	ENST00000516057	NA	NA	DNAJC16	NA	chr1:15858660-15878799	inner
LNCA_21_P0012532	1.1060187	A	1.370929	A	0.832250478527836	0	lncRNA	ENST00000424366	NA	NA	NA	NA	XLOC_l2_010097	NA	ENST00000424366	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010097), lincRNA [TCONS_l2_00020067]"	chr3:6781490-6781231	hs|3p26.1	Agilent_HUMAN_G3V2	ENST00000424366	ENST00000424366	chr3	  6781231	  6781490	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49221_PI429285431	1.5680538	A	0.8999485	A	1.58898477341305	0	lncRNA	53041-1_{1..679}	hg19_lincRNAsTranscripts_TCONS_l2_00020934 range=chr4:185973063-185977439 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020934 range=chr4:185973063-185977439 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	185973063	185973741	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31202_PI429285431	5.6905775	P	6.052483	P	0.778136144677799	0	lncRNA	32996-1_{1..1686}	n337647|AY038071|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|26|NULL|8.1005900|-0.0305328	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337647|AY038071|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|26|NULL|8.1005900|-0.0305328	chrX	 25022789	 25024474	-	NA	NA	NA	NA	POLA1	NA	chrX:25012789-25015103	inner
CUST_3489_PI429285431	0.9915809	A	0.90930164	A	1.05868930371188	0	lncRNA	3460-1_{1..1404}	"transcript_id ""ENST00000433644.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433644.2"" | genecode_v17"	chr9	 98177116	 98178519	-	ENSG00000237857.2	ENST00000433644.2	RP11-435O5.2	RP11-435O5.2-001	PTCH1	NA	chr9:98175399-98199078	inter
CUST_27790_PI429285431	4.1815243	P	4.520191	P	0.79077178430952	0	lncRNA	29375-1_{1..1693}	n325016|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078467|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078467|0.0323344|-0.2889754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325016|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078467|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078467|0.0323344|-0.2889754	chr20	 25792904	 25794596	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00"	NA	inter
CUST_27965_PI429285431	5.353019	P	5.489436	P	0.909775822309646	0	lncRNA	29569-1_{1..437}	n325214|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329251|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329251|-0.9496820|-0.3611201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325214|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329251|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329251|-0.9496820|-0.3611201	chr2	104563710	104564146	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26597_PI429285431	1.4383692	A	0.9265553	A	1.42584177948213	0	lncRNA	28100-1_{1..504}	lnc-CALCOCO2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALCOCO2-2:2	chr17	 46801690	 46802193	+	lnc-CALCOCO2-2	lnc-CALCOCO2-2:2	ENSG00000229637.2	HOXB-AS5	PRAC	NA	chr17:46799081-46799882	inter
CUST_25501_PI429285431	4.929194	P	5.4149837	P	0.714106076679094	0	lncRNA	27031-1_{1..815}	lnc-PLAT-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLAT-3:1	chr8	 42128169	 42128983	-	lnc-PLAT-3	lnc-PLAT-3:1	ENSG00000253408.1	RP11-231D20.2	IKBKB	NA	chr8:42128820-42138715	inter
CUST_38695_PI429285431	5.680949	P	6.127446	P	0.733822476918901	0	lncRNA	39691-1_{1..2107}	n384092|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zsv.2||1.6467500|-0.2071199	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384092|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zsv.2||1.6467500|-0.2071199	chr22	 20970517	 20972623	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80"	NA	inter
CUST_21355_PI429285431	0.90962297	A	0.9156678	A	0.995818808751028	0	lncRNA	22979-1_{1..794}	lnc-RPP38-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPP38-3:1	chr10	 15283146	 15283939	+	lnc-RPP38-3	lnc-RPP38-3:1	ENSG00000232739.1	RP11-25G10.2	FAM171A1	NA	chr10:15273146-15293766	inner
CUST_42644_PI429285431	5.752656	P	6.1762047	P	0.745588389887484	0	lncRNA	45528-1_{1..125}	ENST00000408156 ncrna:snoRNA chromosome:GRCh37:1:8571854:8571978:-1 gene:ENSG00000221083 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408156 ncrna:snoRNA chromosome:GRCh37:1:8571854:8571978:-1 gene:ENSG00000221083 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	  8571854	  8571978	-	ENSG00000221083	ENST00000408156	NA	NA	RERE	NA	chr1:8561854-8581978	inner
CUST_44385_PI429285431	0.9155528	A	0.93222713	A	0.98850876956038	0	lncRNA	49005-1_{1..1153}	"gi|300069029|ref|NR_033964.1| Homo sapiens uncharacterized LOC441025 (LOC441025), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300069029|ref|NR_033964.1| Homo sapiens uncharacterized LOC441025 (LOC441025), non-coding RNA"	Chr4	 76279286	 76280438	+	441025	NR_033964.1	NA	NA	NA	NA	NA	inter
CUST_30296_PI429285431	1.8462058	A	2.2879598	A	0.736238959583516	0	lncRNA	32072-1_{1..329}	n335196|AY456125|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254781|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254781|1.3777300|-0.2281755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335196|AY456125|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254781|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254781|1.3777300|-0.2281755	chr7	136553832	136554160	+	NA	NA	NA	NA	CHRM2	NA	chr7:136553399-136701771	inter
CUST_44612_PI429285431	1.0042815	A	0.91318905	A	1.06517645926573	0	lncRNA	49184-2_{3001..4632}	"gi|208609944|ref|NR_001282.2| Homo sapiens protocadherin beta 19 pseudogene (PCDHB19P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|208609944|ref|NR_001282.2| Homo sapiens protocadherin beta 19 pseudogene (PCDHB19P), non-coding RNA"	NA	NA	NA	NA	NA	NR_001282.2	NA	NA	NA	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30"	NA	Unknown
CUST_19777_PI429285431	0.89107186	A	0.8980552	A	0.995171213823745	0	lncRNA	21435-1_{1..337}	lnc-SMC5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMC5-2:1	chr9	 73345622	 73345958	+	lnc-SMC5-2	lnc-SMC5-2:1	ENSG00000223966.1	RP11-141J10.2	TRPM3	NA	chr9:73335622-73355772	inner
CUST_45282_PI429285431	1.3051598	A	1.9025161	A	0.660964045219085	0	lncRNA	49730-1_{1..2030}	"gi|223278418|ref|NR_026785.1| Homo sapiens RHPN1 antisense RNA 1 (head to head) (RHPN1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223278418|ref|NR_026785.1| Homo sapiens RHPN1 antisense RNA 1 (head to head) (RHPN1-AS1), non-coding RNA"	Chr8	144448793	144450822	-	78998	NR_026785.1	NA	NA	NA	NA	NA	inter
CUST_31097_PI429285431	4.5390444	P	3.991575	P	1.46151982608888	0	lncRNA	32888-1_{1..289}	n337376|DQ655952|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393065|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393065|0.2605930|-0.1202094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337376|DQ655952|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393065|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393065|0.2605930|-0.1202094	chr15	 43939546	 43939834	-	NA	NA	NA	NA	CATSPER2	NA	chr15:43929546-43941039	inner
LNCA_19_P00315518	2.9422884	A	3.0740762	P	0.912699723869144	0	lncRNA	ENST00000427157	NA	NA	NA	NA	XLOC_005810	NA	ENST00000427157	NA	NA	"BROAD Institute lincRNA (XLOC_005810), lincRNA [TCONS_00011543]"	chr6:113944796-113944737	hs|6q21	Agilent_HUMAN_G3V2	ENST00000427157	ENST00000427157	chr6	113944737	113944796	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37248_PI429285431	2.0005534	A	1.4004625	A	1.51581207039209	0	lncRNA	38355-1_{1..861}	n345679|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1228|NULL|-1.3273000|-0.2230766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345679|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1228|NULL|-1.3273000|-0.2230766	chr7	121091086	121091946	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002265	4.1365175	P	4.8082147	P	0.627767740826282	0	lncRNA	TCONS_00004866	NA	NA	NA	NA	XLOC_001608	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001608), lincRNA [TCONS_00004866]"	chr2:105721821-105721880	hs|2q12.1	Agilent_HUMAN_G3V2	TCONS_00004866	TCONS_00004866	chr2	105721821	105721880	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22760_PI429285431	1.7760268	A	3.4305694	P	0.317638435515299	0	lncRNA	24343-1_{1..475}	lnc-SLC39A11-1:21	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC39A11-1:21	chr17	 70417313	 70417787	-	lnc-SLC39A11-1	lnc-SLC39A11-1:21	ENSG00000227036.2	LINC00511	NA	NA	NA	inter
LNCA_21_P0007262	2.7605295	A	2.7002764	A	1.04264866243994	0	lncRNA	TCONS_00019441	NA	NA	NA	NA	XLOC_009251	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009251), lincRNA [TCONS_00019441]"	chr11:92985147-92985206	hs|11q21	Agilent_HUMAN_G3V2	TCONS_00019441	TCONS_00019441	chr11	 92985147	 92985206	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48155_PI429285431	0.88416994	A	1.136559	A	0.839505068178686	0	lncRNA	52020-1_{1..950}	"gi|397137715|ref|XR_159246.1| PREDICTED: Homo sapiens uncharacterized LOC100996876 (LOC100996876), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397137715|ref|XR_159246.1| PREDICTED: Homo sapiens uncharacterized LOC100996876 (LOC100996876), misc_RNA"	NA	NA	NA	NA	NA	XR_159246.1	NA	NA	NA	NA	NA	Unknown
CUST_30362_PI429285431	1.8608366	A	2.3420696	A	0.716365120517455	0	lncRNA	32138-1_{1..261}	n335460|AY764263|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257659|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257659|0.2703190|-0.1784718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335460|AY764263|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257659|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257659|0.2703190|-0.1784718	chr1	107937920	107938180	+	NA	NA	NA	NA	NTNG1	NA	chr1:107927920-108024475	inner
CUST_50001_PI429285431	0.89350224	A	0.99187547	A	0.934085664557877	0	lncRNA	53738-1_{1..279}	hg19_lincRNAsTranscripts_TCONS_l2_00027553 range=chr8:846714-952276 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027553 range=chr8:846714-952276 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	   846714	   846992	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24876_PI429285431	0.891361	A	0.8903466	A	1.00070337575275	0	lncRNA	26417-1_{1..402}	lnc-ELMOD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ELMOD2-1:1	chr4	141636950	141637351	+	lnc-ELMOD2-1	lnc-ELMOD2-1:1	ENSG00000248335.1	RP11-102N12.2	TBC1D9	NA	chr4:141626950-141647235	inner
CUST_12623_PI429285431	1.0581609	A	1.4190038	A	0.778709482785323	0	lncRNA	14238-1_{1..636}	lnc-SLC15A4-10:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC15A4-10:4	chr12	128120947	128121582	-	lnc-SLC15A4-10	lnc-SLC15A4-10:4	XLOC_010252	linc-DHX37-13	NA	NA	NA	inter
CUST_12879_PI429285431	1.1250523	A	0.88522863	A	1.18084832620655	0	lncRNA	14507-1_{1..471}	lnc-MAN2A1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAN2A1-3:1	chr5	108812211	108812681	+	lnc-MAN2A1-3	lnc-MAN2A1-3:1	XLOC_004502	linc-MAN2A1-2	NA	NA	NA	inter
CUST_28851_PI429285431	1.363275	A	1.4509301	A	0.941051054370763	0	lncRNA	30559-1_{1..271}	n326266|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000087994|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000087994|-1.1515300|-0.1669503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326266|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000087994|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000087994|-1.1515300|-0.1669503	chr1	204330706	204330976	+	NA	NA	NA	NA	PLEKHA6	NA	chr1:204320706-204329044	inter
CUST_46173_PI429285431	4.1856685	P	4.575017	P	0.763474300482897	0	lncRNA	50420-1_{1..2438}	"gi|343407654|ref|NR_044998.1| Homo sapiens paraspeckle component 1 (PSPC1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|343407654|ref|NR_044998.1| Homo sapiens paraspeckle component 1 (PSPC1), transcript variant 3, non-coding RNA"	Chr13	 20248892	 20251329	-	55269	NR_044998.1	NA	NA	NA	NA	NA	inter
CUST_46570_PI429285431	6.871846	P	7.2621384	P	0.7629749519175	0	lncRNA	50754-1_{1..698}	"gi|410170716|ref|XR_109235.3| PREDICTED: Homo sapiens uncharacterized LOC100130285 (LOC100130285), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170716|ref|XR_109235.3| PREDICTED: Homo sapiens uncharacterized LOC100130285 (LOC100130285), misc_RNA"	NA	NA	NA	NA	NA	XR_109235.3	NA	NA	NA	NA	NA	Unknown
CUST_26968_PI429285431	0.8784135	A	0.88105935	A	0.998167717215722	0	lncRNA	28491-1_{1..452}	n324052|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052953|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052953|-0.9186920|-0.1928901	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324052|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052953|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052953|-0.9186920|-0.1928901	chr9	 89668900	 89669351	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37554_PI429285431	0.9152712	A	0.92159086	A	0.99562912568612	0	lncRNA	38658-1_{1..1837}	n346030|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1580|NULL|-1.3009100|-0.1594210	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346030|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1580|NULL|-1.3009100|-0.1594210	chr9	133297678	133299514	-	NA	NA	NA	NA	HMCN2	NA	chr9:133287678-133309104	inter
CUST_42235_PI429285431	2.860116	A	3.5600982	P	0.615579801661394	0	lncRNA	44364-1_{1..119}	ENST00000595546 proj_ncrna:miRNA chromosome:GRCh37:HG1433_PATCH:53299223:53299341:-1 gene:ENSG00000269370 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000595546 proj_ncrna:miRNA chromosome:GRCh37:HG1433_PATCH:53299223:53299341:-1 gene:ENSG00000269370 gene_biotype:miRNA transcript_biotype:miRNA	chrHG1433_PATCH	 53299223	 53299341	-	ENSG00000269370	ENST00000595546	NA	NA	NA	NA	NA	Unknown
CUST_17120_PI429285431	9.027953	P	8.285614	P	1.67288584316806	0	lncRNA	18830-1_{1..675}	lnc-FOXD4L1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXD4L1-1:3	chr2	114265430	114266104	+	lnc-FOXD4L1-1	lnc-FOXD4L1-1:3	XLOC_001631	linc-RABL2A-2	FOXD4L1	NA	chr2:114256661-114258727	inter
LNCA_21_P0011606	3.0226958	P	1.8245423	A	2.29445816143657	0	lncRNA	THC2511873	NA	NA	NA	NA	XLOC_l2_006166	NA	NA	THC2511873	NA	"BROAD Institute lincRNA (XLOC_l2_006166), lincRNA [TCONS_l2_00011417]"	chr17:062970611-062970552	hs|17q24.1	Agilent_HUMAN_G3V2	THC2511873	THC2511873	chr17	 62970552	 62970611	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9976_PI429285431	7.9212327	P	7.96959	P	0.96703680218129	0	lncRNA	11500-1_{1..280}	lnc-PDCD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDCD2-1:1	chr6	170921684	170921963	-	lnc-PDCD2-1	lnc-PDCD2-1:1	XLOC_005950	linc-PDCD2-4	NA	NA	NA	inter
CUST_22690_PI429285431	6.933871	P	7.5319324	P	0.660641085850349	0	lncRNA	24273-1_{1..626}	lnc-ADAM8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAM8-2:1	chr10	135109028	135109653	-	lnc-ADAM8-2	lnc-ADAM8-2:1	ENSG00000235245.1	RP11-122K13.12	TUBGCP2	NA	chr10:135099028-135119481	inner
CUST_27572_PI429285431	1.724382	A	1.981992	A	0.836472490787363	0	lncRNA	29150-1_{1..821}	n324771|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206833|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206833|-0.1663440|-0.2356571	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324771|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206833|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206833|-0.1663440|-0.2356571	chr21	 45838019	 45838839	+	NA	NA	NA	NA	TRPM2	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20chr21:45828019-45851433"	NA	inner
LNCA_21_P0009513	3.5465174	P	4.2150693	P	0.629137865324218	0	lncRNA	TCONS_00026393	NA	NA	NA	NA	XLOC_012743	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012743), lincRNA [TCONS_00026393]"	chr18:2506628-2506569	hs|18p11.32	Agilent_HUMAN_G3V2	TCONS_00026393	TCONS_00026393	chr18	  2506569	  2506628	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42957_PI429285431	0.9094179	A	0.91282856	A	0.997638702895593	0	lncRNA	46089-1_{1..69}	ENST00000384381 ncrna:snoRNA chromosome:GRCh37:3:53367087:53367155:-1 gene:ENSG00000207109 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384381 ncrna:snoRNA chromosome:GRCh37:3:53367087:53367155:-1 gene:ENSG00000207109 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	 53367087	 53367155	-	ENSG00000207109	ENST00000384381	NA	NA	DCP1A	NA	chr3:53357087-53377155	inner
CUST_27724_PI429285431	1.905271	A	1.9926442	A	0.94123495200972	0	lncRNA	29305-1_{1..613}	n324938|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079781|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079781|-0.8592580|-0.4051045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324938|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079781|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079781|-0.8592580|-0.4051045	chr20	 53473009	 53473621	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013331	5.289462	P	5.990624	P	0.615076601642488	0	lncRNA	TCONS_l2_00026680	NA	NA	NA	NA	XLOC_l2_013886	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013886), lincRNA [TCONS_l2_00026680]"	chr7:68853167-68853108	hs|7q11.22	Agilent_HUMAN_G3V2	TCONS_l2_00026680	TCONS_l2_00026680	chr7	 68853108	 68853167	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26143_PI429285431	1.277163	A	1.094579	A	1.1349148031538	0	lncRNA	27654-1_{1..723}	lnc-FOXB1-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXB1-3:6	chr15	 60839917	 60840639	+	lnc-FOXB1-3	lnc-FOXB1-3:6	ENSG00000245534.2	RP11-219B17.1	RORA	NA	chr15:60829917-60850163	inner
LNCA_21_P0003912	0.8829118	A	0.8834294	A	0.999641291370672	0	lncRNA	TCONS_00009183	NA	NA	NA	NA	XLOC_004196	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004196), lincRNA [TCONS_00009183]"	chr4:183998439-183994608	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00009183	TCONS_00009183	chr4	183994608	183998439	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6677_PI429285431	0.90694624	A	1.246115	A	0.790496642441065	0	lncRNA	6625-1_{1..271}	"transcript_id ""ENST00000416563.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416563.1"" | genecode_v17"	chr20	 26113523	 26113793	-	ENSG00000230440.1	ENST00000416563.1	RP13-329D4.3	RP13-329D4.3-001	NA	NA	NA	inter
LNCA_21_P0014542	0.8841183	A	0.88503015	A	0.999368153442566	0	lncRNA	ENST00000434716	XR_110250	XR_110250	NA	NA	LOC100507242	NA	ENST00000434716	THC2540227	NA	"PREDICTED: Homo sapiens hypothetical LOC100507242 (LOC100507242), miscRNA [XR_110250]"	chr14:101422373-101422432	hs|14q32.31	Agilent_HUMAN_G3V2	ENST00000434716	ENST00000434716	chr14	101422373	101422432	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006850	8.248463	P	8.114647	P	1.09719199379647	0	lncRNA	TCONS_00018150	NA	NA	NA	NA	XLOC_008429	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008429), lincRNA [TCONS_00018150]"	chr10:29524800-29524859	hs|10p12.1	Agilent_HUMAN_G3V2	TCONS_00018150	TCONS_00018150	chr10	 29524800	 29524859	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28623_PI429285431	1.1930221	A	0.88947046	A	1.23417898979429	0	lncRNA	30308-1_{1..513}	n325992|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047733|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047733|-0.7776270|-0.1326919	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325992|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047733|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047733|-0.7776270|-0.1326919	chr10	 43727897	 43728409	+	NA	NA	NA	NA	RASGEF1A	NA	chr10:43717897-43739690	inner
CUST_20557_PI429285431	1.8278122	A	1.5491635	A	1.21305814146564	0	lncRNA	22198-1_{1..551}	lnc-C14orf23-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C14orf23-6:1	chr14	 30126618	 30127168	+	lnc-C14orf23-6	lnc-C14orf23-6:1	ENSG00000257120.1	CTD-2503I6.1	PRKD1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr14:30116618-30137122"	NA	inner
CUST_22122_PI429285431	7.0484047	P	5.3589797	P	3.2252813137636	0	lncRNA	23725-2_{3001..3088}	lnc-IL17B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL17B-2:2	chr5	148883682	148883769	-	lnc-IL17B-2	lnc-IL17B-2:2	ENSG00000230551.3	CTB-89H12.4	CSNK1A1	NA	chr5:148874845-148890816	inner
CUST_49306_PI429285431	0.8832185	A	0.88480574	A	0.998900414057282	0	lncRNA	53124-1_{1..509}	hg19_lincRNAsTranscripts_TCONS_l2_00022831 range=chr5:34163167-34176062 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022831 range=chr5:34163167-34176062 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 34163167	 34163675	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22776_PI429285431	7.508416	P	7.8032627	P	0.815158946152477	0	lncRNA	24356-1_{1..718}	lnc-ADI1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-ADI1-2:1	chr2	  3304625	  3305342	-	lnc-ADI1-2	lnc-ADI1-2:1	ENSG00000224885.1	TSSC1-IT1	TSSC1	NA	chr2:3294625-3315236	inner
CUST_51771_PI429285431	2.9709678	A	3.867797	P	0.537065815020383	0	lncRNA	55322-1_{1..1720}	hg19_lincRNAsTranscripts_TCONS_l2_00012267 range=chr19:7853859-7855885 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012267 range=chr19:7853859-7855885 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	  7853859	  7855578	+	NA	NA	NA	NA	NA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
LNCA_21_P0009729	0.884713	A	0.8973204	A	0.991299288424391	0	lncRNA	TCONS_00027115	NA	NA	NA	NA	XLOC_013162	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013162), lincRNA [TCONS_00027115]"	chr19:56400675-56400734	hs|19q13.43	Agilent_HUMAN_G3V2	TCONS_00027115	TCONS_00027115	chr19	 56400675	 56400734	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014496	8.400394	P	8.633959	P	0.850530572553362	0	lncRNA	ENST00000518481	XR_110092	XR_110092	NA	NA	LOC100507448	NA	ENST00000518481	THC2618446	NA	"PREDICTED: Homo sapiens hypothetical LOC100507448, transcript variant 2 (LOC100507448), miscRNA [XR_110092]"	chr8:1711056-1710997	hs|8p23.3	Agilent_HUMAN_G3V2	ENST00000518481	ENST00000518481	chr8	  1710997	  1711056	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28436_PI429285431	0.91197044	A	0.9175485	A	0.996141048402535	0	lncRNA	30095-1_{1..521}	n325760|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044593|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044593|-1.2845600|-0.4521812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325760|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044593|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044593|-1.2845600|-0.4521812	chr13	 37522953	 37523473	-	NA	NA	NA	NA	FAM48A	NA	chr13:37583449-37625369	inner
CUST_9532_PI429285431	0.8862904	A	1.2283521	A	0.788913100541585	0	lncRNA	11043-1_{1..1097}	lnc-RP11-152O14.2.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-152O14.2.1-1:2	chr16	 52118978	 52120074	-	lnc-RP11-152O14.2.1-1	lnc-RP11-152O14.2.1-1:2	XLOC_011941	linc-SALL1-2	NA	NA	NA	inter
LNCA_21_P0005875	5.7592955	P	6.019208	P	0.835138569362549	0	lncRNA	TCONS_00015110	NA	NA	NA	NA	XLOC_007167	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007167), lincRNA [TCONS_00015110]"	chr8:98630699-98630236	hs|8q22.1	Agilent_HUMAN_G3V2	TCONS_00015110	TCONS_00015110	chr8	 98630236	 98630699	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1792_PI429285431	3.0368981	A	1.569674	A	2.76489386250835	0	lncRNA	1778-1_{1..672}	"transcript_id ""ENST00000507857.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507857.2"" | genecode_v17"	chr4	 63994029	 63994700	+	ENSG00000251055.2	ENST00000507857.2	RP11-257A22.1	RP11-257A22.1-001	NA	NA	NA	inter
CUST_21983_PI429285431	1.4640843	A	1.1341989	A	1.25691352804883	0	lncRNA	23591-1_{1..557}	lnc-HMOX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMOX1-1:1	chr22	 35805471	 35806027	+	lnc-HMOX1-1	lnc-HMOX1-1:1	ENSG00000240293.1	CTA-286B10.7	MCM5	NA	chr22:35796116-35816001	inner
LNCA_21_P0012018	3.0875983	P	4.275453	P	0.438955105628351	0	lncRNA	TCONS_l2_00015431	NA	NA	NA	NA	XLOC_l2_007478	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007478), lincRNA [TCONS_l2_00015431]"	chr2:107119010-107121069	hs|2q12.2	Agilent_HUMAN_G3V2	TCONS_l2_00015431	TCONS_l2_00015431	chr2	107119010	107121069	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34593_PI429285431	4.6825266	P	4.9191732	P	0.848715776144968	0	lncRNA	36051-1_{1..1438}	n341477|AK025893|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3947|NULL|-0.7931760|-0.2493232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341477|AK025893|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3947|NULL|-0.7931760|-0.2493232	chr8	 30409861	 30411298	+	NA	NA	NA	NA	RBPMS	NA	chr8:30399861-30421283	inner
CUST_44480_PI429285431	9.822389	P	9.831909	P	0.99342296285536	0	lncRNA	49083-1_{1..2878}	"gi|237649107|ref|NR_027633.1| Homo sapiens bromodomain containing 9 (BRD9), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237649107|ref|NR_027633.1| Homo sapiens bromodomain containing 9 (BRD9), transcript variant 4, non-coding RNA"	Chr5	   863850	   866727	-	65980	NR_027633.1	NA	NA	NA	NA	NA	inter
CUST_1584_PI429285431	6.248912	P	6.2012663	P	1.03357687715336	0	lncRNA	1570-1_{1..949}	"transcript_id ""ENST00000490001.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000490001.1"" | genecode_v17"	chr3	181670161	181671109	+	ENSG00000242512.3	ENST00000490001.1	RP11-416O18.1	RP11-416O18.1-003	NA	NA	NA	inter
CUST_23685_PI429285431	1.0656942	A	0.91008294	A	1.11389346728903	0	lncRNA	25250-1_{1..503}	lnc-DHCR24-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHCR24-1:1	chr1	 55315733	 55316235	-	lnc-DHCR24-1	lnc-DHCR24-1:1	ENSG00000244324.1	RP11-67L3.6	DHCR24	NA	chr1:55315300-55326072	inner
LNCA_21_P0014287	0.90321714	A	0.9270971	A	0.983583910102032	0	lncRNA	XR_109152	XR_109152	XR_109152	NA	Hs.651545	LOC100507654	uncharacterized LOC100507654	NA	THC2606855	NA	"PREDICTED: Homo sapiens hypothetical LOC100507654 (LOC100507654), miscRNA [XR_109152]"	chr13:101188921-101188862	hs|13q32.3	Agilent_HUMAN_G3V2	XR_109152	XR_109152	chr13	101188862	101188921	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_747_PI429285431	2.1955283	A	1.9615011	A	1.17611342405788	0	lncRNA	738-1_{1..1635}	"transcript_id ""ENST00000396164.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000396164.1"" | genecode_v17"	chr2	 11239977	 11241611	-	ENSG00000145063.10	ENST00000396164.1	AC062028.1	AC062028.1-202	C2orf50	NA	chr2:11242249-11282302	inter
LNCA_21_P0009582	6.5449915	P	6.453578	P	1.06541352458172	0	lncRNA	TCONS_00026568	NA	NA	NA	NA	XLOC_012886	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012886), lincRNA [TCONS_00026568]"	chr18:73219988-73219929	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026568	TCONS_00026568	chr18	 73219929	 73219988	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004276	0.9046564	A	1.101187	A	0.872646586747496	0	lncRNA	TCONS_00010037	NA	NA	NA	NA	XLOC_004467	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004467), lincRNA [TCONS_00010037]"	chr5:89711863-89711922	hs|5q14.3	Agilent_HUMAN_G3V2	TCONS_00010037	TCONS_00010037	chr5	 89711863	 89711922	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6027_PI429285431	0.89807695	A	0.90420604	A	0.995760650068702	0	lncRNA	5953-1_{1..567}	"transcript_id ""ENST00000572608.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000572608.1"" | genecode_v17"	chr18	    14195	    14761	-	ENSG00000263305.1	ENST00000572608.1	AP005530.2	AP005530.2-002	LOC100652790	NA	chr18:11264-12387	inter
CUST_48649_PI429285431	4.189188	P	4.6258845	P	0.738824442066825	0	lncRNA	52496-1_{1..476}	hg19_lincRNAsTranscripts_TCONS_l2_00013789 range=chr2:91957096-91964043 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013789 range=chr2:91957096-91964043 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 91957096	 91957571	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012832	2.6382139	A	3.2573721	P	0.651050699330179	0	lncRNA	TCONS_l2_00022370	NA	NA	NA	NA	XLOC_l2_011636	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011636), lincRNA [TCONS_l2_00022370]"	chr5:74963221-74963280	hs|5q13.3	Agilent_HUMAN_G3V2	TCONS_l2_00022370	TCONS_l2_00022370	chr5	 74963221	 74963280	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44575_PI429285431	4.422857	P	5.902487	P	0.358580763433031	0	lncRNA	49157-1_{1..689}	"gi|338221683|ref|NR_039994.1| Homo sapiens TMEM161B antisense RNA 1 (TMEM161B-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338221683|ref|NR_039994.1| Homo sapiens TMEM161B antisense RNA 1 (TMEM161B-AS1), transcript variant 2, non-coding RNA"	Chr5	 87564841	 87565529	+	100505894	NR_039994.1	NA	NA	NA	NA	NA	inter
CUST_21251_PI429285431	6.6591845	P	7.1956115	P	0.689476363740137	0	lncRNA	22877-1_{1..507}	lnc-C1QTNF5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1QTNF5-1:1	chr11	119207758	119208264	-	lnc-C1QTNF5-1	lnc-C1QTNF5-1:1	ENSG00000245385.2	RP11-334E6.10	C1QTNF5	"hg19_refFlat_RNF26:range=chr11:119205833-1192071345'pad=0,hg19_refFlat_RNF26:range=chr11:119205833-1192071345'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10chr11:119209652-119217383"	NA	inner
LNCA_21_P0006213	5.7595224	P	5.733134	P	1.01845935082089	0	lncRNA	TCONS_00016134	NA	NA	NA	NA	XLOC_007528	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007528), lincRNA [TCONS_00016134]"	chr9:117424850-117424909	hs|9q32	Agilent_HUMAN_G3V2	TCONS_00016134	TCONS_00016134	chr9	117424850	117424909	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17140_PI429285431	1.9020672	A	2.1225002	A	0.858307791515905	0	lncRNA	18849-1_{1..432}	lnc-JUN-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JUN-6:3	chr1	 59761542	 59761973	-	lnc-JUN-6	lnc-JUN-6:3	XLOC_000852	linc-JUN-3	FGGY	NA	chr1:59762625-59771578	inter
CUST_42263_PI429285431	1.980192	A	1.8032147	A	1.13051277899803	0	lncRNA	44727-1_{1..113}	ENST00000410527 ncrna:rRNA chromosome:GRCh37:9:110681147:110681259:-1 gene:ENSG00000222459 gene_biotype:rRNA transcript_biotype:rRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410527 ncrna:rRNA chromosome:GRCh37:9:110681147:110681259:-1 gene:ENSG00000222459 gene_biotype:rRNA transcript_biotype:rRNA	chr9	110681147	110681259	-	ENSG00000222459	ENST00000410527	NA	NA	NA	NA	NA	inter
CUST_37125_PI429285431	2.190939	A	2.0905132	A	1.07208983465911	0	lncRNA	38248-1_{1..1199}	n345566|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1115|NULL|-1.4045400|-0.3319133	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345566|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1115|NULL|-1.4045400|-0.3319133	chr2	208230422	208231620	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43919_PI429285431	7.0323195	P	6.052862	P	1.9717238376288	0	lncRNA	48632-1_{1..2384}	"gi|410170438|ref|XR_171079.1| PREDICTED: Homo sapiens uncharacterized LOC644617 (LOC644617), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410170438|ref|XR_171079.1| PREDICTED: Homo sapiens uncharacterized LOC644617 (LOC644617), misc_RNA"	NA	NA	NA	NA	NA	XR_171079.1	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60"	NA	Unknown
CUST_5175_PI429285431	0.90722495	A	0.9071124	A	1.00007801675832	0	lncRNA	5116-1_{1..572}	"transcript_id ""ENST00000560339.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560339.1"" | genecode_v17"	chr15	 48481234	 48481805	-	ENSG00000259235.1	ENST00000560339.1	RP11-605F22.2	RP11-605F22.2-002	CTXN2	NA	chr15:48483867-48493228	inter
CUST_23352_PI429285431	8.13884	P	8.48683	P	0.785677962553352	0	lncRNA	24921-1_{1..812}	lnc-ATHL1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATHL1-1:3	chr11	   288950	   289761	+	lnc-ATHL1-1	lnc-ATHL1-1:3	ENSG00000255026.1	RP11-326C3.2	ATHL1	NA	chr11:289138-295688	inter
CUST_37683_PI429285431	0.9090604	A	0.9201909	A	0.992314610106334	0	lncRNA	38775-1_{1..2140}	n346171|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1721|NULL|-1.6186100|-0.1035977	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346171|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1721|NULL|-1.6186100|-0.1035977	chr12	  9568581	  9570720	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33865_PI429285431	6.587965	P	7.201028	P	0.653807123017463	0	lncRNA	35409-1_{1..1736}	n340653|CR624511|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3115|NULL|-0.7103820|-0.1541043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340653|CR624511|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3115|NULL|-0.7103820|-0.1541043	chr17	 38629805	 38631540	-	NA	NA	NA	NA	TNS4	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20chr17:38632080-38641541"	NA	inter
CUST_38301_PI429285431	1.3677576	A	0.92638	A	1.35790033985485	0	lncRNA	39353-1_{1..3000}	n381979|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001umb.1||3.5360000|-0.1923835	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381979|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001umb.1||3.5360000|-0.1923835	chr13	 19620292	 19623291	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31890_PI429285431	9.450727	P	11.157526	P	0.306339009945396	0	lncRNA	33622-1_{1..1992}	n338445|BC040869|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|842|NULL|-0.9052160|-0.3954510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338445|BC040869|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|842|NULL|-0.9052160|-0.3954510	chr1	198975168	198977159	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19268_PI429285431	1.0629193	A	1.1168814	A	0.963287199510418	0	lncRNA	20936-1_{1..283}	lnc-KIAA0319L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0319L-1:2	chr1	 36039173	 36039455	-	lnc-KIAA0319L-1	lnc-KIAA0319L-1:2	ENSG00000239636.1	RP4-728D4.2	TFAP2E	NA	chr1:36038971-36049348	inner
CUST_49946_PI429285431	4.791839	P	4.553321	P	1.17978011655686	0	lncRNA	53696-1_{1..694}	hg19_lincRNAsTranscripts_TCONS_l2_00026198 range=chr7:128214774-128259236 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026198 range=chr7:128214774-128259236 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	128214774	128215467	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48313_PI429285431	2.5607195	A	2.2129781	A	1.27256680995254	0	lncRNA	52171-1_{1..334}	hg19_lincRNAsTranscripts_TCONS_l2_00002008 range=chr1:26542603-26551653 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002008 range=chr1:26542603-26551653 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 26542603	 26542936	+	NA	NA	NA	NA	CEP85	NA	chr1:26545577-26561653	inter
CUST_39128_PI429285431	1.5028934	A	1.9188209	A	0.749537466565527	0	lncRNA	40104-1_{1..445}	n385722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004coj.1||-1.2100900|-0.1439960	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004coj.1||-1.2100900|-0.1439960	chr9	140954808	140955252	-	NA	NA	NA	NA	CACNA1B	NA	chr9:140944808-140965599	inner
CUST_2728_PI429285431	2.7500072	A	2.5403419	A	1.15641986758083	0	lncRNA	2713-1_{1..500}	"transcript_id ""ENST00000603529.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603529.1"" | genecode_v17"	chr6	170606964	170607463	-	ENSG00000271234.1	ENST00000603529.1	RP5-894D12.4	RP5-894D12.4-001	FAM120B	NA	chr6:170615844-170617463	inter
CUST_7073_PI429285431	2.708751	A	4.121158	P	0.375684369908626	0	lncRNA	7017-2_{3001..6000}	"transcript_id ""ENST00000604411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000604411.1"" | genecode_v17"	chrX	 73015040	 73018039	+	ENSG00000270641.1	ENST00000604411.1	TSIX	TSIX-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
LNCA_33_P3359168	4.9229155	P	5.3949804	P	0.720932003692762	0	lncRNA	XR_132650	XR_132650	XR_132650	100506694	Hs.567934	LOC100506694	uncharacterized LOC100506694	NA	THC2497772	NA	"PREDICTED: Homo sapiens hypothetical LOC100506694, transcript variant 3 (LOC100506694), miscRNA [XR_132650]"	chr19:28297059-28297118	hs|19q11	Agilent_HUMAN_G3V2	XR_132650	XR_132650	chr19	 28297059	 28297118	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013473	0.8825704	A	0.8885303	A	0.995877433324135	0	lncRNA	TCONS_l2_00027730	NA	NA	NA	NA	XLOC_l2_014183	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014183), lincRNA [TCONS_l2_00027730]"	chr8:39409585-39409644	hs|8p11.22	Agilent_HUMAN_G3V2	TCONS_l2_00027730	TCONS_l2_00027730	chr8	 39409585	 39409644	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9593_PI429285431	0.8945186	A	0.90546167	A	0.992443536597509	0	lncRNA	11108-1_{1..660}	lnc-MYC-2:33	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYC-2:33	chr8	129113226	129113885	+	lnc-MYC-2	lnc-MYC-2:33	XLOC_006925	linc-EFR3A-4	NA	NA	NA	inter
LNCA_21_P0004539	0.8815039	A	1.4266698	A	0.685312591727374	0	lncRNA	TCONS_00010836	NA	NA	NA	NA	XLOC_004640	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004640), lincRNA [TCONS_00010836]"	chr5:172894181-172894240	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_00010836	TCONS_00010836	chr5	172894181	172894240	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014247	0.8807166	A	0.8848869	A	0.997113542166027	0	lncRNA	XR_109012	XR_109012	XR_109012	NA	Hs.658287	LOC100507309	uncharacterized LOC100507309	NA	THC2492321	NA	"PREDICTED: Homo sapiens hypothetical LOC100507309 (LOC100507309), miscRNA [XR_109012]"	chr10:14566848-14566789	hs|10p13	Agilent_HUMAN_G3V2	XR_109012	XR_109012	chr10	 14566789	 14566848	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47350_PI429285431	0.89862424	A	0.89680254	A	1.00126350376798	0	lncRNA	51401-1_{1..1095}	"gi|224586828|ref|NR_027270.1| Homo sapiens ankyrin repeat domain 20 family, member A11, pseudogene (ANKRD20A11P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224586828|ref|NR_027270.1| Homo sapiens ankyrin repeat domain 20 family, member A11, pseudogene (ANKRD20A11P), non-coding RNA"	Chr21	 15316090	 15317184	-	391267	NR_027270.1	NA	NA	NA	NA	NA	inter
CUST_23108_PI429285431	2.5419035	A	2.0711892	A	1.38579542642839	0	lncRNA	24679-1_{1..412}	lnc-ORC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ORC4-1:1	chr2	148660431	148660842	-	lnc-ORC4-1	lnc-ORC4-1:1	ENSG00000223911.1	AC009480.3	ACVR2A	"hg19_refFlat_ACVR2A:range=chr2:148602722-1486848435'pad=0,hg19_refFlat_ACVR2A:range=chr2:148602722-1486848435'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00chr2:148650431-148670525"	NA	inner
CUST_14553_PI429285431	0.8962157	A	1.0504112	A	0.898633344309307	0	lncRNA	16222-1_{1..651}	lnc-CUL2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CUL2-1:2	chr10	 35415496	 35416146	-	lnc-CUL2-1	lnc-CUL2-1:2	XLOC_008777	linc-CUL2-1	CREM	NA	chr10:35415801-35425588	inter
LNCA_21_P0009885	0.87969136	A	2.0105624	A	0.45663994143171	0	lncRNA	ENST00000425405	NA	NA	NA	NA	XLOC_013665	NA	ENST00000425405	NA	NA	"BROAD Institute lincRNA (XLOC_013665), lincRNA [TCONS_00028010]"	chr20:17868090-17868031	hs|20p12.1	Agilent_HUMAN_G3V2	ENST00000425405	ENST00000425405	chr20	 17868031	 17868090	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_369_PI429285431	4.232836	P	4.1626883	P	1.04982415684959	0	lncRNA	361-1_{1..454}	"transcript_id ""ENST00000423907.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423907.1"" | genecode_v17"	chr1	116966346	116966799	-	ENSG00000233154.1	ENST00000423907.1	RP4-655J12.4	RP4-655J12.4-001	NA	NA	NA	inter
LNCA_21_P0007540	0.87964416	A	0.88125145	A	0.998886531834384	0	lncRNA	TCONS_00020374	NA	NA	NA	NA	XLOC_009706	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009706), lincRNA [TCONS_00020374]"	chr12:33475217-33475276	hs|12p11.1	Agilent_HUMAN_G3V2	TCONS_00020374	TCONS_00020374	chr12	 33475217	 33475276	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11015_PI429285431	3.4331636	P	3.4228256	P	1.00719149101356	0	lncRNA	12560-1_{1..286}	lnc-TBX3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBX3-3:1	chr12	115741580	115741865	-	lnc-TBX3-3	lnc-TBX3-3:1	XLOC_010207	linc-TBX3-2	NA	NA	NA	inter
CUST_36824_PI429285431	0.88268447	A	0.878469	A	1.0029262141761	0	lncRNA	37992-1_{1..2022}	n345300|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_849|NULL|-1.4352700|-0.2636623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345300|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_849|NULL|-1.4352700|-0.2636623	chr15	 25570910	 25572931	+	NA	NA	NA	NA	SNRPN	NA	chr15:25560910-25590648	inter
CUST_18830_PI429285431	0.87748194	A	0.8765089	A	1.00067468743182	0	lncRNA	20524-1_{1..534}	lnc-RP11-826N14.2.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-826N14.2.1-2:2	chr5	175612104	175612637	-	lnc-RP11-826N14.2.1-2	lnc-RP11-826N14.2.1-2:2	ENSG00000248596	RP11-844P9.2	NA	NA	NA	inter
LNCA_21_P0009755	0.88109684	A	0.8816824	A	0.999594203094797	0	lncRNA	THC2694211	NA	NA	NA	NA	XLOC_013284	NA	NA	THC2694211	NA	"BROAD Institute lincRNA (XLOC_013284), lincRNA [TCONS_00027281]"	chr19:028380070-028380013	hs|19q11	Agilent_HUMAN_G3V2	THC2694211	THC2694211	chr19	 28380013	 28380070	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010036	1.2322259	A	0.88181853	A	1.2749205724636	0	lncRNA	TCONS_00028384	NA	NA	NA	NA	XLOC_013739	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013739), lincRNA [TCONS_00028384]"	chr20:37063058-37062999	hs|20q11.23	Agilent_HUMAN_G3V2	TCONS_00028384	TCONS_00028384	chr20	 37062999	 37063058	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014383	0.8815977	A	0.88211083	A	0.999644388631956	0	lncRNA	XR_109535	XR_109535	XR_109535	NA	Hs.711136	LOC100505535	uncharacterized LOC100505535	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505535 (LOC100505535), miscRNA [XR_109535]"	chr19:42219722-42219663	hs|19q13.2	Agilent_HUMAN_G3V2	XR_109535	XR_109535	chr19	 42219663	 42219722	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13302_PI429285431	1.1106435	A	0.8818542	A	1.17185112687674	0	lncRNA	14936-1_{1..581}	lnc-PZP-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PZP-4:1	chr12	  9519832	  9520412	-	lnc-PZP-4	lnc-PZP-4:1	XLOC_010009	linc-PZP-3	NA	NA	NA	inter
CUST_19113_PI429285431	1.058987	A	0.89380133	A	1.12131037761752	0	lncRNA	20796-5_{12001..14994}	lnc-EGLN1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-EGLN1-3:1	NA	    12000	    14993	NA	NA	NA	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_DISC1:range=chr1:231762614-2321446375'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321446375'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2319542715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319542715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_DISC1:range=chr1:231762614-2320946385'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2320946385'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_DISC1:range=chr1:231762614-2320023245'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2320023245'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_DISC1:range=chr1:231762614-2321449005'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321449005'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_DISC1:range=chr1:231762614-2319541255'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319541255'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50"	NA	Unknown
LNCA_21_P0004357	0.88236535	A	0.8828365	A	0.999673477026113	0	lncRNA	TCONS_00010257	NA	NA	NA	NA	XLOC_004723	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004723), lincRNA [TCONS_00010257]"	chr5:5932217-5932158	hs|5p15.32	Agilent_HUMAN_G3V2	TCONS_00010257	TCONS_00010257	chr5	  5932158	  5932217	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008828	2.3831851	A	1.9123981	A	1.38586526091393	0	lncRNA	TCONS_00023959	NA	NA	NA	NA	XLOC_011280	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011280), lincRNA [TCONS_00023959]"	chr15:62881957-62897066	hs|15q22.2	Agilent_HUMAN_G3V2	TCONS_00023959	TCONS_00023959	chr15	 62881957	 62897066	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33629_PI429285431	1.8488892	A	0.8809423	A	1.95605495078571	0	lncRNA	35194-1_{1..265}	n340391|AF056430|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2852|NULL|-1.2828200|-0.3157518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340391|AF056430|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2852|NULL|-1.2828200|-0.3157518	chr5	 10713893	 10714157	+	NA	NA	NA	NA	DAP	NA	chr5:10703893-10724161	inner
CUST_1367_PI429285431	0.89609236	A	1.7647861	A	0.547642478386303	0	lncRNA	1355-1_{1..565}	"transcript_id ""ENST00000487097.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000487097.1"" | genecode_v17"	chr3	 64430907	 64431471	+	ENSG00000244564.1	ENST00000487097.1	RP11-14D22.1	RP11-14D22.1-001	NA	NA	NA	inter
CUST_2645_PI429285431	2.7481294	P	3.3959022	P	0.638264892395329	0	lncRNA	2632-1_{1..381}	"transcript_id ""ENST00000417800.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417800.1"" | genecode_v17"	chr6	138266503	138266883	+	ENSG00000229922.1	ENST00000417800.1	RP11-240M16.1	RP11-240M16.1-001	NA	NA	NA	inter
CUST_28188_PI429285431	1.1154172	A	0.9009809	A	1.16025048453855	0	lncRNA	29815-1_{1..507}	n325468|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323190|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323190|-1.2350200|-0.4828718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325468|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323190|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323190|-1.2350200|-0.4828718	chr2	  4655664	  4656170	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31289_PI429285431	0.89404607	A	0.8990929	A	0.996507915573756	0	lncRNA	33077-1_{1..2270}	n337750|BX537526|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|132|NULL|-0.7162230|-0.3953525	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337750|BX537526|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|132|NULL|-0.7162230|-0.3953525	chr15	 48426827	 48429096	-	NA	NA	NA	NA	SLC24A5	"hg19_refFlat_SLC24A5:range=chr15:48413242-484345485'pad=0,hg19_refFlat_SLC24A5:range=chr15:48413242-484345485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60chr15:48416827-48434589"	NA	inner
CUST_29047_PI429285431	10.263853	P	10.109902	P	1.11261233094218	0	lncRNA	30776-1_{1..787}	n326537|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092710|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092710|-1.1676600|-0.3389722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326537|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092710|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092710|-1.1676600|-0.3389722	chr1	 88138179	 88138965	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002249	0.8850928	A	0.88679016	A	0.998824171530268	0	lncRNA	TCONS_00003751	NA	NA	NA	NA	XLOC_001549	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001549), lincRNA [TCONS_00003751]"	chr2:84303278-84303337	hs|2p11.2	Agilent_HUMAN_G3V2	TCONS_00003751	TCONS_00003751	chr2	 84303278	 84303337	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14040_PI429285431	1.5478139	A	1.7412629	A	0.874512554054736	0	lncRNA	15686-1_{1..219}	lnc-AGGF1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AGGF1-2:1	chr5	 76276786	 76277004	+	lnc-AGGF1-2	lnc-AGGF1-2:1	XLOC_004433	linc-AGGF1-2	NA	NA	NA	inter
CUST_30535_PI429285431	6.853991	P	6.9380565	P	0.943395418695264	0	lncRNA	32315-1_{1..653}	n335703|CR620646|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000299841|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000299841|1.8404100|-0.2846054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335703|CR620646|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000299841|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000299841|1.8404100|-0.2846054	chr8	126104086	126104738	+	NA	NA	NA	NA	KIAA0196	NA	chr8:126094086-126104061	inner
CUST_34553_PI429285431	0.89116156	A	0.9198496	A	0.980311369264443	0	lncRNA	36013-1_{1..863}	n341434|AK058157|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3904|NULL|-0.9899600|-0.1843026	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341434|AK058157|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3904|NULL|-0.9899600|-0.1843026	chr13	110917597	110918459	-	NA	NA	NA	NA	COL4A1	NA	chr13:110907597-110928460	inner
CUST_4083_PI429285431	8.777766	P	8.472689	P	1.23548457606135	0	lncRNA	4045-1_{1..479}	"transcript_id ""ENST00000424313.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424313.2"" | genecode_v17"	chr11	115498783	115499261	+	ENSG00000255599.1	ENST00000424313.2	AP000997.1	AP000997.1-001	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60"	NA	inter
CUST_41934_PI429285431	0.8960189	A	0.89978784	A	0.997390979291296	0	lncRNA	43684-1_{1..84}	ENST00000384923 ncrna:miRNA chromosome:GRCh37:7:93113248:93113331:-1 gene:ENSG00000207656 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384923 ncrna:miRNA chromosome:GRCh37:7:93113248:93113331:-1 gene:ENSG00000207656 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 93113248	 93113331	-	ENSG00000207656	ENST00000384923	NA	NA	CALCR	NA	chr7:93103248-93123331	inner
LNCA_21_P0010637	0.88211393	A	0.8850827	A	0.997944321252437	0	lncRNA	ENST00000452922	NA	BC030750	NA	Hs.596857	XLOC_l2_001011	NA	ENST00000452922	THC2583744	NA	"BROAD Institute lincRNA (XLOC_l2_001011), lincRNA [TCONS_l2_00001395]"	chr1:95285543-95197966	hs|1p21.3	Agilent_HUMAN_G3V2	ENST00000452922	ENST00000452922	chr1	 95197966	 95285543	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23089_PI429285431	2.0252533	A	2.4623046	A	0.738642766332161	0	lncRNA	24661-1_{1..1026}	lnc-HBE1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HBE1-1:2	chr11	  5526799	  5527824	-	lnc-HBE1-1	lnc-HBE1-1:2	ENSG00000167355.3	AC104389.28	UBQLNL	NA	chr11:5535623-5536882	inner
CUST_47179_PI429285431	0.8772809	A	0.88045913	A	0.997799443618423	0	lncRNA	51257-1_{1..3000}	"gi|305682569|ref|NR_036599.1| Homo sapiens zinc finger protein 28 (ZNF28), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|305682569|ref|NR_036599.1| Homo sapiens zinc finger protein 28 (ZNF28), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_036599.1	NA	NA	NA	NA	NA	Unknown
CUST_15930_PI429285431	0.89370185	A	0.90431833	A	0.992668226372383	0	lncRNA	17627-1_{1..473}	lnc-CDH3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH3-2:1	chr16	 68647901	 68648373	+	lnc-CDH3-2	lnc-CDH3-2:1	XLOC_011768	linc-CDH3-1	NA	NA	NA	inter
CUST_38459_PI429285431	0.9056878	A	0.9257846	A	0.986166533805589	0	lncRNA	39479-1_{1..3000}	n382907|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002cqc.1||7.9443000|-0.1292098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382907|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002cqc.1||7.9443000|-0.1292098	chr16	  2390922	  2393921	+	NA	NA	NA	NA	ABCA3	NA	chr16:2380922-2390747	inter
CUST_11750_PI429285431	7.1905823	P	7.434731	P	0.844313858677094	0	lncRNA	13330-1_{1..591}	lnc-PPARGC1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPARGC1B-1:1	chr5	149100522	149101112	+	lnc-PPARGC1B-1	lnc-PPARGC1B-1:1	XLOC_004600	linc-PPARGC1B	PPARGC1B	NA	chr5:149109815-149111072	inter
CUST_39424_PI429285431	1.8297327	A	2.4990447	A	0.628806484314739	0	lncRNA	40381-4_{9001..12000}	n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	chr13	 19417542	 19420541	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_28115_PI429285431	1.0481057	A	0.9876449	A	1.04279877990093	0	lncRNA	29738-1_{1..2472}	n325388|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323863|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323863|-0.7679380|-0.2280771	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325388|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323863|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323863|-0.7679380|-0.2280771	chr2	 19932132	 19934603	+	NA	NA	NA	NA	NA	"hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_7531_PI429285431	11.689245	P	11.751252	P	0.957930570303303	0	lncRNA	9169-1_{1..324}	lnc-KIAA1919-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1919-3:6	chr6	111824499	111824822	+	lnc-KIAA1919-3	lnc-KIAA1919-3:6	ENSG00000231889	TRAF3IP2-AS1	NA	NA	NA	inter
CUST_17381_PI429285431	0.9056542	A	0.9092362	A	0.997520226529876	0	lncRNA	19103-1_{1..501}	lnc-DTNBP1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DTNBP1-2:5	chr6	 15753097	 15753597	-	lnc-DTNBP1-2	lnc-DTNBP1-2:5	XLOC_005621	linc-DTNBP1-1	NA	NA	NA	inter
CUST_43117_PI429285431	6.007074	P	5.974823	P	1.02260642814156	0	lncRNA	47932-1_{1..565}	ENST00000592032 havana:3prime_overlapping_ncrna chromosome:GRCh37:18:54695063:54706076:1 gene:ENSG00000267225 gene_biotype:3prime_overlapping_ncrna transcript_biotype:3prime_overlapping_ncrna	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000592032 havana:3prime_overlapping_ncrna chromosome:GRCh37:18:54695063:54706076:1 gene:ENSG00000267225 gene_biotype:3prime_overlapping_ncrna transcript_biotype:3prime_overlapping_ncrna	chr18	 54695063	 54695627	+	ENSG00000267225	ENST00000592032	NA	NA	WDR7	NA	chr18:54685063-54697036	inner
LNCA_21_P0012615	0.9059177	A	0.9275994	A	0.985083756717329	0	lncRNA	TCONS_l2_00020771	NA	NA	NA	NA	XLOC_l2_010843	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010843), lincRNA [TCONS_l2_00020771]"	chr4:135855736-135855795	hs|4q28.3	Agilent_HUMAN_G3V2	TCONS_l2_00020771	TCONS_l2_00020771	chr4	135855736	135855795	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21875_PI429285431	2.1134331	A	1.6599908	A	1.36930354845732	0	lncRNA	23485-1_{1..393}	lnc-C1orf185-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf185-2:1	chr1	 51731619	 51732011	+	lnc-C1orf185-2	lnc-C1orf185-2:1	ENSG00000236434.1	RP11-296A18.6	RNF11	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50chr1:51721619-51739119"	NA	inner
CUST_39349_PI429285431	0.8903943	A	0.9020199	A	0.991974128813631	0	lncRNA	40316-1_{1..3000}	n386437|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010kzt.1||3.2204000|-0.3445733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386437|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010kzt.1||3.2204000|-0.3445733	chr7	 64498731	 64501730	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70"	NA	inter
CUST_32565_PI429285431	0.9208075	A	0.91610974	A	1.00326154640454	0	lncRNA	34229-1_{1..1556}	n339182|BC008085|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1613|NULL|-1.3117000|-0.3765891	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339182|BC008085|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1613|NULL|-1.3117000|-0.3765891	chr2	237276202	237277757	+	NA	NA	NA	NA	IQCA1	"hg19_refFlat_IQCA1:range=chr2:237233331-2374123055'pad=0,hg19_refFlat_IQCA1:range=chr2:237233331-2374123055'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_IQCA1:range=chr2:237233331-2374159105'pad=0,hg19_refFlat_IQCA1:range=chr2:237233331-2374159105'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20chr2:237266202-237287745"	NA	inter
CUST_5200_PI429285431	0.89510113	A	0.90438277	A	0.993587108328266	0	lncRNA	5141-1_{1..2369}	"transcript_id ""ENST00000559985.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559985.1"" | genecode_v17"	chr15	 62488344	 62490712	-	ENSG00000259697.1	ENST00000559985.1	RP11-299H22.1	RP11-299H22.1-001	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40"	NA	inter
CUST_31935_PI429285431	6.0228047	P	5.540099	P	1.39736189042984	0	lncRNA	33663-1_{1..1902}	n338491|AK097788|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|888|NULL|1.4403200|-0.1436642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338491|AK097788|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|888|NULL|1.4403200|-0.1436642	chr1	205782468	205784369	+	NA	NA	NA	NA	LOC100131354	NA	chr1:205781868-205784368	inter
LNCA_21_P0001646	3.6472852	P	3.250063	P	1.31696974256848	0	lncRNA	TCONS_00001887	NA	NA	NA	NA	XLOC_001266	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001266), lincRNA [TCONS_00001887]"	chr1:235109047-235108988	hs|1q42.3	Agilent_HUMAN_G3V2	TCONS_00001887	TCONS_00001887	chr1	235108988	235109047	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41817_PI429285431	7.230941	P	7.2210946	P	1.00684834781728	0	lncRNA	43415-1_{1..110}	ENST00000578937 ncrna:miRNA chromosome:GRCh37:8:146078798:146078907:1 gene:ENSG00000263640 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578937 ncrna:miRNA chromosome:GRCh37:8:146078798:146078907:1 gene:ENSG00000263640 gene_biotype:miRNA transcript_biotype:miRNA	chr8	146078798	146078907	+	ENSG00000263640	ENST00000578937	NA	NA	COMMD5	NA	chr8:146075551-146078932	inner
CUST_5819_PI429285431	1.9557786	A	2.17874	A	0.856804878688696	0	lncRNA	5746-1_{1..469}	"transcript_id ""ENST00000579327.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579327.1"" | genecode_v17"	chr17	 33164890	 33165358	-	ENSG00000264622.1	ENST00000579327.1	RP11-642M2.1	RP11-642M2.1-001	NA	NA	NA	inter
CUST_48311_PI429285431	2.6382706	A	1.6692538	A	1.95750609557131	0	lncRNA	52169-1_{1..608}	hg19_lincRNAsTranscripts_TCONS_l2_00001072 range=chr1:21737969-21739761 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001072 range=chr1:21737969-21739761 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 21737969	 21738576	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50374_PI429285431	8.248682	P	8.569016	P	0.800884442440358	0	lncRNA	54088-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030323 range=chrX:106773652-106848480 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030323 range=chrX:106773652-106848480 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	106773652	106776651	+	NA	NA	NA	NA	FRMPD3	NA	chrX:106765680-106848479	inter
CUST_31003_PI429285431	0.92380446	A	2.064248	A	0.453620095936578	0	lncRNA	32791-1_{1..348}	n337166|AJ244500|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000384069|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000384069|-0.9854720|-0.2372664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337166|AJ244500|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000384069|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000384069|-0.9854720|-0.2372664	chr1	 82418510	 82418857	+	NA	NA	NA	NA	LPHN2	NA	chr1:82408510-82428858	inner
CUST_8054_PI429285431	0.92800784	A	1.2200335	A	0.816754464057988	0	lncRNA	9662-1_{1..1029}	lnc-FAM65B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM65B-1:1	chr6	 25042079	 25043107	-	lnc-FAM65B-1	lnc-FAM65B-1:1	ENSG00000251355	ENST00000510784	NA	NA	NA	inter
CUST_16694_PI429285431	0.88681173	A	0.8946093	A	0.994609716335419	0	lncRNA	18399-1_{1..616}	lnc-AC011239.1.1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC011239.1.1-5:2	chr2	 23313618	 23314233	-	lnc-AC011239.1.1-5	lnc-AC011239.1.1-5:2	XLOC_002018	linc-APOB-2	NA	NA	NA	inter
CUST_5838_PI429285431	3.6303928	P	3.7302363	P	0.933134210144517	0	lncRNA	5767-1_{1..510}	"transcript_id ""ENST00000577621.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577621.1"" | genecode_v17"	chr17	 37165545	 37166054	-	ENSG00000266588.1	ENST00000577621.1	RP1-56K13.5	RP1-56K13.5-001	NA	NA	NA	inter
CUST_26524_PI429285431	5.8596306	P	5.6688075	P	1.14141474085414	0	lncRNA	28031-1_{1..432}	lnc-RBM48-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBM48-1:1	chr7	 92546151	 92546582	+	lnc-RBM48-1	lnc-RBM48-1:1	ENSG00000237819.1	AC002454.1	NA	NA	NA	inter
CUST_8642_PI429285431	4.045268	P	4.1043086	P	0.959902247305227	0	lncRNA	10195-1_{1..2064}	lnc-SHFM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHFM1-1:1	chr7	 95786351	 95788414	-	lnc-SHFM1-1	lnc-SHFM1-1:1	ENSG00000248129	ENST00000503390	SLC25A13	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20chr7:95776351-95796386"	NA	inter
CUST_17171_PI429285431	0.9085583	A	0.902563	A	1.00416427187557	0	lncRNA	18881-1_{1..1524}	lnc-SOCS5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOCS5-2:2	chr2	 47049240	 47050763	+	lnc-SOCS5-2	lnc-SOCS5-2:2	XLOC_001459	linc-TTC7A-3	NA	NA	NA	inter
CUST_27217_PI429285431	5.1143365	P	4.9838557	P	1.09465845200699	0	lncRNA	28760-1_{1..1477}	n324350|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042603|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042603|-1.1091100|-0.3384205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324350|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042603|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042603|-1.1091100|-0.3384205	chr6	147750492	147751968	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11947_PI429285431	0.8797797	A	0.8865528	A	0.99531624796865	0	lncRNA	13527-1_{1..849}	lnc-CRYGS-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYGS-1:5	chr3	186175874	186176722	-	lnc-CRYGS-1	lnc-CRYGS-1:5	XLOC_003358	linc-DGKG	NA	NA	NA	inter
CUST_6112_PI429285431	3.0238638	P	4.6313477	P	0.3281701900439	0	lncRNA	6038-1_{1..481}	"transcript_id ""ENST00000579431.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579431.1"" | genecode_v17"	chr18	 19747216	 19747696	-	ENSG00000266010.1	ENST00000579431.1	RP11-627G18.3	RP11-627G18.3-003	GATA6	NA	chr18:19749416-19758379	inter
CUST_28967_PI429285431	2.5687108	A	2.9985905	P	0.742323681843775	0	lncRNA	30689-1_{1..727}	n326399|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000102088|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000102088|-0.7513030|-0.4670125	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326399|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000102088|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000102088|-0.7513030|-0.4670125	chr1	144940122	144940848	-	NA	NA	NA	NA	PDE4DIP	NA	chr1:144930122-144951802	inner
CUST_14857_PI429285431	0.8889172	A	0.90090954	A	0.991721996279595	0	lncRNA	16520-1_{1..905}	lnc-ARHGAP10-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGAP10-3:1	chr4	149944456	149945360	+	lnc-ARHGAP10-3	lnc-ARHGAP10-3:1	XLOC_003730	linc-DCLK2-4	NA	NA	NA	inter
CUST_32220_PI429285431	0.8793522	A	1.017669	A	0.908578580655088	0	lncRNA	33913-1_{1..1616}	n338794|BC043278|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1217|NULL|-1.2920100|-0.3794222	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338794|BC043278|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1217|NULL|-1.2920100|-0.3794222	chr13	 89279106	 89280721	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2537_PI429285431	0.8860905	A	0.9029466	A	0.988384231861765	0	lncRNA	2525-1_{1..761}	"transcript_id ""ENST00000438738.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438738.1"" | genecode_v17"	chr6	 46726033	 46726793	-	ENSG00000236164.1	ENST00000438738.1	RP11-268F1.3	RP11-268F1.3-001	LOC100287718	"hg19_refFlat_ANKRD66:range=chr6:46714659-467266585'pad=0,hg19_refFlat_ANKRD66:range=chr6:46714659-467266585'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20chr6:46716033-46726955"	NA	inner
CUST_34517_PI429285431	0.8767415	A	0.8779105	A	0.999190039141451	0	lncRNA	35981-1_{1..435}	n341395|CR611007|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3864|NULL|-0.7115710|-0.1968296	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341395|CR611007|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3864|NULL|-0.7115710|-0.1968296	chr8	  6369417	  6369851	-	NA	NA	NA	NA	MCPH1	NA	chr8:6359417-6379852	inner
CUST_8377_PI429285431	5.336503	P	5.851873	P	0.69961348379534	0	lncRNA	9955-1_{1..1668}	lnc-C11orf35-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C11orf35-3:1	chr11	   575189	   576856	-	lnc-C11orf35-3	lnc-C11orf35-3:1	ENSG00000246532	XLOC_009350	PHRF1	NA	chr11:576483-585885	inter
CUST_22482_PI429285431	4.6339884	P	5.7383137	P	0.465119941420724	0	lncRNA	24069-1_{1..673}	lnc-ATXN7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATXN7-1:1	chr3	 63847175	 63847847	+	lnc-ATXN7-1	lnc-ATXN7-1:1	ENSG00000240549.2	THOC7-AS1	ATXN7	NA	chr3:63850233-63857495	inner
CUST_11411_PI429285431	4.588573	P	5.231076	M	0.640600575807267	0	lncRNA	12977-1_{1..2801}	lnc-SEC24D-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEC24D-1:2	chr4	119596671	119599471	-	lnc-SEC24D-1	lnc-SEC24D-1:2	XLOC_004053	linc-PRSS12-1	METTL14	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80chr4:119586671-119606884"	NA	inter
CUST_30414_PI429285431	9.125975	P	9.228981	P	0.931090947523787	0	lncRNA	32194-1_{1..740}	n335548|BC080181|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000265771|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000265771|-1.0606200|-0.0907857	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335548|BC080181|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000265771|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000265771|-1.0606200|-0.0907857	chr17	 80005767	 80006506	-	NA	NA	NA	NA	DUS1L	NA	chr17:80015751-80016507	inner
CUST_18727_PI429285431	3.8761315	P	4.1368365	P	0.834679937740447	0	lncRNA	20425-1_{1..873}	lnc-GTF2F2-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2F2-2:5	chr13	 45952665	 45953537	+	lnc-GTF2F2-2	lnc-GTF2F2-2:5	ENSG00000170919	XXyac-R12DG2.2	NA	NA	NA	inter
CUST_32529_PI429285431	1.960998	A	1.0349025	A	1.90012654151923	0	lncRNA	34196-1_{1..3000}	n339137|AL122122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1567|NULL|0.1839090|-0.2573023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339137|AL122122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1567|NULL|0.1839090|-0.2573023	chr2	217692809	217695808	-	NA	NA	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.20"	NA	inter
CUST_21957_PI429285431	9.175773	P	9.578445	P	0.756455961077072	0	lncRNA	23565-1_{1..468}	lnc-NME3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NME3-2:1	chr16	  1764003	  1764470	-	lnc-NME3-2	lnc-NME3-2:1	ENSG00000261399.1	LA16c-329F2.1	MAPK8IP3	NA	chr16:1756221-1774209	inner
CUST_44874_PI429285431	3.2522101	P	2.2260454	A	2.03660288757441	0	lncRNA	49398-1_{1..2846}	"gi|190014608|ref|NR_003085.2| Homo sapiens PMS2 postmeiotic segregation increased 2 (S. cerevisiae) (PMS2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|190014608|ref|NR_003085.2| Homo sapiens PMS2 postmeiotic segregation increased 2 (S. cerevisiae) (PMS2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_003085.2	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011471	1.655426	A	1.929962	A	0.826716164095111	0	lncRNA	XR_133099	XR_133099	XR_133099	NA	NA	LOC100653259	e3 ubiquitin-protein ligase HERC2-like	NA	NA	NA	"PREDICTED: Homo sapiens e3 ubiquitin-protein ligase HERC2-like (LOC100653259), miscRNA [XR_133099]"	chr16:32178227-32178168	hs|16p11.2	Agilent_HUMAN_G3V2	XR_133099	XR_133099	chr16	 32178168	 32178227	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32314_PI429285431	3.195825	P	3.6302006	P	0.74001396418327	0	lncRNA	33997-1_{1..959}	n338891|BC033332|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1317|NULL|-0.8517090|-0.3447684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338891|BC033332|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1317|NULL|-0.8517090|-0.3447684	chr2	 79719544	 79720502	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14661_PI429285431	0.88137436	A	2.7207866	A	0.279435604566353	0	lncRNA	16330-1_{1..449}	lnc-OBFC2A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OBFC2A-2:1	chr2	192502050	192502498	+	lnc-OBFC2A-2	lnc-OBFC2A-2:1	XLOC_001787	linc-OBFC2A	NA	NA	NA	inter
CUST_23789_PI429285431	5.738194	P	6.2126	P	0.719763076644125	0	lncRNA	25354-1_{1..819}	lnc-KAT2B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-KAT2B-1:1	chr3	 20227467	 20228285	+	lnc-KAT2B-1	lnc-KAT2B-1:1	ENSG00000237485.1	SGOL1-AS1	SGOL1	"hg19_refFlat_SGOL1:range=chr3:20212196-202255195'pad=0,hg19_refFlat_SGOL1:range=chr3:20212196-202255195'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SGOL1:range=chr3:20202597-202255195'pad=0,hg19_refFlat_SGOL1:range=chr3:20202597-202255195'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chr3:20217467-20227724"	NA	inter
CUST_49555_PI429285431	3.9581792	P	4.284716	P	0.797448468853057	0	lncRNA	53344-3_{6001..7059}	hg19_lincRNAsTranscripts_TCONS_l2_00024305 range=chr6:80773211-80780323 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024305 range=chr6:80773211-80780323 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 80779211	 80780269	+	NA	NA	NA	NA	NA	"hg19_refFlat_ARHGAP21:range=chr10:24873341-250108285'pad=0,hg19_refFlat_ARHGAP21:range=chr10:24873341-250108285'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80"	NA	inter
CUST_43445_PI429285431	9.768283	P	9.581659	P	1.13809737567999	0	lncRNA	48253-1_{1..3000}	"gi|386869228|ref|NR_048548.1| Homo sapiens solute carrier family 6 (neurotransmitter transporter, glycine), member 9 (SLC6A9), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|386869228|ref|NR_048548.1| Homo sapiens solute carrier family 6 (neurotransmitter transporter, glycine), member 9 (SLC6A9), transcript variant 5, non-coding RNA"	Chr1	 44462155	 44465154	-	6536	NR_048548.1	NA	NA	NA	NA	NA	inter
CUST_21389_PI429285431	2.566596	A	1.5829382	A	1.97747273055424	0	lncRNA	23011-1_{1..739}	lnc-RP11-324D17.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-324D17.1.1-3:1	chr16	 54033600	 54034338	-	lnc-RP11-324D17.1.1-3	lnc-RP11-324D17.1.1-3:1	ENSG00000260194.1	RP11-357N13.2	FTO	NA	chr16:54023600-54043881	inner
LNCA_21_P0005426	0.88366026	A	1.2530224	A	0.774124685532935	0	lncRNA	TCONS_00013583	NA	NA	NA	NA	XLOC_006235	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006235), lincRNA [TCONS_00013583]"	chr7:125924234-125924293	hs|7q31.33	Agilent_HUMAN_G3V2	TCONS_00013583	TCONS_00013583	chr7	125924234	125924293	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42168_PI429285431	0.88318914	A	0.880192	A	1.00207961855409	0	lncRNA	44212-1_{1..84}	ENST00000580047 ncrna:miRNA chromosome:GRCh37:17:45050383:45050466:1 gene:ENSG00000264999 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580047 ncrna:miRNA chromosome:GRCh37:17:45050383:45050466:1 gene:ENSG00000264999 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 45050383	 45050466	+	ENSG00000264999	ENST00000580047	NA	NA	RPRML	NA	chr17:45055522-45056614	inter
CUST_9708_PI429285431	6.6320295	P	4.173338	P	5.49717916231548	0	lncRNA	11223-1_{1..2370}	lnc-AC016745.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC016745.1-2:1	chr2	114466280	114468649	-	lnc-AC016745.1-2	lnc-AC016745.1-2:1	XLOC_002282	linc-PAX8-3	SLC35F5	"hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30chr2:114471933-114477816"	NA	inter
CUST_20992_PI429285431	1.1316316	A	1.7662512	A	0.644110627068584	0	lncRNA	22621-1_{1..255}	lnc-OSBPL9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OSBPL9-1:1	chr1	 52026554	 52026808	+	lnc-OSBPL9-1	lnc-OSBPL9-1:1	ENSG00000227070.1	RP11-191G24.1	OSBPL9	NA	chr1:52020400-52036633	inter
CUST_19283_PI429285431	0.8796255	A	0.88306975	A	0.997615475329841	0	lncRNA	20951-1_{1..734}	lnc-FAM54A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM54A-1:1	chr6	136546676	136547409	-	lnc-FAM54A-1	lnc-FAM54A-1:1	ENSG00000237596.1	RP13-143G15.4	FAM54A	NA	chr6:136552168-136556733	inter
CUST_37103_PI429285431	0.8955982	A	0.89930236	A	0.997435765220694	0	lncRNA	38228-1_{1..529}	n345546|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1095|NULL|-1.3311000|-0.2896060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345546|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1095|NULL|-1.3311000|-0.2896060	chr2	158580506	158581034	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12941_PI429285431	4.2844553	P	4.248117	P	1.02550768272718	0	lncRNA	14569-1_{1..1340}	lnc-KCNQ2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNQ2-2:1	chr20	 62110344	 62111683	-	lnc-KCNQ2-2	lnc-KCNQ2-2:1	XLOC_013845	linc-KCNQ2	EEF1A2	NA	chr20:62119366-62121644	inter
CUST_28381_PI429285431	1.1570015	A	1.1995859	A	0.970914122629836	0	lncRNA	30033-1_{1..557}	n325696|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045268|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045268|-1.2413300|-0.2640255	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325696|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045268|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045268|-1.2413300|-0.2640255	chr13	 73036381	 73036937	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51182_PI429285431	0.9112508	A	0.8919706	A	1.01345371386405	0	lncRNA	54802-2_{3001..4414}	hg19_lincRNAsTranscripts_TCONS_l2_00007915 range=chr14:101534354-101539520 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007915 range=chr14:101534354-101539520 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	101537354	101538767	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8097_PI429285431	8.853534	P	8.69185	P	1.11859206393734	0	lncRNA	9702-1_{1..2034}	lnc-PRL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRL-2:1	chr6	 22570812	 22572845	-	lnc-PRL-2	lnc-PRL-2:1	ENSG00000249949	ENST00000510882	HDGFL1	"hg19_refFlat_HDGFL1:range=chr6:22569805-225705605'pad=0,hg19_refFlat_HDGFL1:range=chr6:22569805-225705605'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.10chr6:22569678-22570750"	NA	inter
CUST_5706_PI429285431	2.4321795	A	2.9541495	P	0.696420221835347	0	lncRNA	5630-1_{1..539}	"transcript_id ""ENST00000572287.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000572287.1"" | genecode_v17"	chr17	  1921010	  1921548	+	ENSG00000228133.2	ENST00000572287.1	AC099684.1	AC099684.1-002	RTN4RL1	NA	chr17:1911010-1928178	inner
CUST_1349_PI429285431	1.9694519	A	1.4034773	A	1.48038723416418	0	lncRNA	1337-2_{3001..5067}	"transcript_id ""ENST00000568686.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568686.1"" | genecode_v17"	chr3	 44161791	 44163857	+	ENSG00000261786.1	ENST00000568686.1	RP4-555D20.2	RP4-555D20.2-001	NA	NA	NA	inter
CUST_22935_PI429285431	2.2806892	A	4.1333866	P	0.276874213383183	0	lncRNA	24510-1_{1..661}	lnc-OTOA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-OTOA-1:1	chr16	 21638063	 21638723	+	lnc-OTOA-1	lnc-OTOA-1:1	ENSG00000261596.1	CTB-31N19.3	METTL9	NA	chr16:21628063-21648723	inner
CUST_17365_PI429285431	0.9154351	A	0.9443003	A	0.980190996424437	0	lncRNA	19085-1_{1..429}	lnc-C5orf63-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf63-1:3	chr5	126564543	126564971	-	lnc-C5orf63-1	lnc-C5orf63-1:3	XLOC_004988	linc-FLJ44606-2	NA	NA	NA	inter
CUST_32505_PI429285431	9.558617	P	8.867222	P	1.61484422175267	0	lncRNA	34172-1_{1..359}	n339109|AK026647|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1539|NULL|-0.5407390|-0.1325818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339109|AK026647|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1539|NULL|-0.5407390|-0.1325818	chr16	 19132689	 19133047	+	NA	NA	NA	NA	ITPRIPL2	NA	chr16:19125254-19132952	inter
CUST_5566_PI429285431	0.8969583	A	2.0515127	A	0.449204909313309	0	lncRNA	5495-1_{1..538}	"transcript_id ""ENST00000562322.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562322.1"" | genecode_v17"	chr16	 58455230	 58455767	+	ENSG00000260186.1	ENST00000562322.1	RP11-481J2.2	RP11-481J2.2-003	NA	NA	NA	inter
CUST_2699_PI429285431	3.3044796	P	3.3501496	P	0.968839774907335	0	lncRNA	2685-1_{1..719}	"transcript_id ""ENST00000452944.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452944.1"" | genecode_v17"	chr6	164124936	164125654	+	ENSG00000235538.1	ENST00000452944.1	RP1-230L10.1	RP1-230L10.1-001	NA	NA	NA	inter
CUST_298_PI429285431	0.9253353	A	0.98125356	A	0.961981956950707	0	lncRNA	290-1_{1..1712}	"transcript_id ""ENST00000452901.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452901.1"" | genecode_v17"	chr1	 83368866	 83370577	+	ENSG00000230817.1	ENST00000452901.1	RP4-601K24.1	RP4-601K24.1-001	NA	NA	NA	inter
CUST_5708_PI429285431	1.5467452	A	2.1779056	A	0.645656886506303	0	lncRNA	5632-1_{1..443}	"transcript_id ""ENST00000572790.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000572790.1"" | genecode_v17"	chr17	  1946769	  1947211	-	ENSG00000263050.1	ENST00000572790.1	RP11-667K14.3	RP11-667K14.3-001	DPH1	NA	chr17:1936769-1946725	inter
CUST_4748_PI429285431	0.89547247	A	1.0847068	A	0.877071078735976	0	lncRNA	4692-1_{1..574}	"transcript_id ""ENST00000548335.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548335.1"" | genecode_v17"	chr14	 27278623	 27279196	+	ENSG00000257185.1	ENST00000548335.1	RP11-626P14.2	RP11-626P14.2-001	NA	NA	NA	inter
LNCA_21_P0003047	0.9030291	A	0.9204011	A	0.98803085415438	0	lncRNA	TCONS_00006281	NA	NA	NA	NA	XLOC_002882	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002882), lincRNA [TCONS_00006281]"	chr3:153107697-153107756	hs|3q25.2	Agilent_HUMAN_G3V2	TCONS_00006281	TCONS_00006281	chr3	153107697	153107756	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12756_PI429285431	0.90844756	A	0.9111288	A	0.998143231984094	0	lncRNA	14380-1_{1..1539}	lnc-NMNAT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NMNAT2-1:1	chr1	183412166	183413704	-	lnc-NMNAT2-1	lnc-NMNAT2-1:1	XLOC_001121	linc-NMNAT2-2	NA	NA	NA	inter
CUST_13399_PI429285431	0.90510666	A	0.9070606	A	0.998646548740443	0	lncRNA	15036-1_{1..1790}	lnc-C1orf227-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-C1orf227-1:2	chr1	213031108	213032897	-	lnc-C1orf227-1	lnc-C1orf227-1:2	XLOC_001197	linc-C1orf227-1	FLVCR1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr1:213031597-213041452"	NA	inter
LNCA_21_P0005607	0.900893	A	0.9168393	A	0.989007728545044	0	lncRNA	TCONS_00014352	NA	NA	NA	NA	XLOC_006520	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006520), lincRNA [TCONS_00014352]"	chr7:90997550-90997491	hs|7q21.13	Agilent_HUMAN_G3V2	TCONS_00014352	TCONS_00014352	chr7	 90997491	 90997550	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43023_PI429285431	6.3892093	P	6.871118	P	0.716029682630942	0	lncRNA	46361-1_{1..126}	ENST00000388106 ncrna:snRNA chromosome:GRCh37:3:57605174:57605299:1 gene:ENSG00000210841 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000388106 ncrna:snRNA chromosome:GRCh37:3:57605174:57605299:1 gene:ENSG00000210841 gene_biotype:snRNA transcript_biotype:snRNA	chr3	 57605174	 57605299	+	ENSG00000210841	ENST00000388106	NA	NA	FAM116A	NA	chr3:57611181-57615299	inter
CUST_18420_PI429285431	0.89955384	A	0.8978631	A	1.00117261864431	0	lncRNA	20144-1_{1..1815}	lnc-HEPH-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-HEPH-1:2	chrX	 65238666	 65240480	+	lnc-HEPH-1	lnc-HEPH-1:2	ENSG00000256910	AL034397.1	VSIG4	NA	chrX:65241580-65250264	inter
CUST_30550_PI429285431	1.6254447	A	0.89245784	A	1.66207658500136	0	lncRNA	32331-1_{1..315}	n335728|V00502|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000320805|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000320805|1.6218900|-0.0351884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335728|V00502|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000320805|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000320805|1.6218900|-0.0351884	chr6	 31964271	 31964585	+	NA	NA	NA	NA	C4A	NA	chr6:31954271-31970457	inner
CUST_11807_PI429285431	8.06035	P	7.2561975	P	1.74611974600448	0	lncRNA	13388-1_{1..942}	lnc-ITGAE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ITGAE-1:1	chr17	  3706476	  3707417	-	lnc-ITGAE-1	lnc-ITGAE-1:1	XLOC_012359	linc-ITGAE	ITGAE	NA	chr17:3696476-3704537	inter
CUST_14446_PI429285431	0.92260265	A	0.8947131	A	1.01951962751853	0	lncRNA	16109-1_{1..1825}	lnc-TPRA1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPRA1-1:4	chr3	127255327	127257151	-	lnc-TPRA1-1	lnc-TPRA1-1:4	XLOC_003240	linc-TXNRD3-3	NA	NA	NA	inter
CUST_7651_PI429285431	3.3483787	P	3.966195	P	0.651656545568072	0	lncRNA	9283-1_{1..2724}	lnc-TSSK6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSSK6-1:1	chr19	 19606638	 19609361	-	lnc-TSSK6-1	lnc-TSSK6-1:1	ENSG00000245833	ENST00000499453	GATAD2A	"hg19_refFlat_MAU2:range=chr19:19431669-194665915'pad=0,hg19_refFlat_MAU2:range=chr19:19431669-194665915'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70chr19:19596638-19616654"	NA	inner
CUST_44969_PI429285431	9.028352	P	8.614125	P	1.3325844833166	0	lncRNA	49480-1_{1..1734}	"gi|197313648|ref|NR_024110.1| Homo sapiens Shwachman-Bodian-Diamond syndrome pseudogene 1 (SBDSP1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|197313648|ref|NR_024110.1| Homo sapiens Shwachman-Bodian-Diamond syndrome pseudogene 1 (SBDSP1), transcript variant 1, non-coding RNA"	Chr7	 72299952	 72301685	+	155370	NR_024110.1	NA	NA	NA	NA	NA	inter
CUST_26180_PI429285431	2.3434134	A	0.925775	A	2.6714784880942	0	lncRNA	27691-1_{1..530}	lnc-ZNF322-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF322-1:1	chr6	 26636790	 26637319	-	lnc-ZNF322-1	lnc-ZNF322-1:1	ENSG00000233631.1	RP11-457M11.2	ZNF322A	NA	chr6:26631313-26647008	inner
CUST_1031_PI429285431	1.0489142	A	1.2617345	A	0.862848813045052	0	lncRNA	1021-1_{1..881}	"transcript_id ""ENST00000432268.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432268.1"" | genecode_v17"	chr2	112249520	112250400	-	ENSG00000224959.1	ENST00000432268.1	AC017002.2	AC017002.2-001	NA	NA	NA	inter
CUST_13474_PI429285431	0.8892238	A	1.4681104	A	0.669480249503705	0	lncRNA	15112-1_{1..722}	lnc-MYEF2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYEF2-3:1	chr15	 48299451	 48300172	-	lnc-MYEF2-3	lnc-MYEF2-3:1	XLOC_011471	linc-SLC30A4-3	NA	NA	NA	inter
LNCA_21_P0008143	0.88891256	A	0.8993308	A	0.992804637786028	0	lncRNA	TCONS_00021972	NA	NA	NA	NA	XLOC_010573	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010573), lincRNA [TCONS_00021972]"	chr13:39141231-39141172	hs|13q13.3	Agilent_HUMAN_G3V2	TCONS_00021972	TCONS_00021972	chr13	 39141172	 39141231	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39254_PI429285431	4.104533	P	4.82594	P	0.606505654129776	0	lncRNA	40225-1_{1..933}	n386137|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bmv.2||1.9569100|-0.1124964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386137|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bmv.2||1.9569100|-0.1124964	chr15	 84872928	 84873860	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9631_PI429285431	0.9009515	A	1.5242981	A	0.649163324508015	0	lncRNA	11148-1_{1..1717}	lnc-STAG3L4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STAG3L4-1:1	chr7	 66804437	 66806153	+	lnc-STAG3L4-1	lnc-STAG3L4-1:1	XLOC_006138	linc-AUTS2-5	NA	NA	NA	inter
CUST_38750_PI429285431	4.7893004	P	4.2217164	P	1.48203960321048	0	lncRNA	39741-1_{1..1794}	n384298|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ebh.1||-1.1882800|-0.2165589	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384298|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ebh.1||-1.1882800|-0.2165589	chr3	114033681	114035474	-	NA	NA	NA	NA	TIGIT	NA	chr3:114023681-114029135	inter
CUST_15769_PI429285431	1.7055268	A	2.7528267	A	0.483872917986458	0	lncRNA	17457-1_{1..821}	lnc-ALPL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALPL-1:1	chr1	 21917478	 21918298	+	lnc-ALPL-1	lnc-ALPL-1:1	XLOC_000087	linc-LDLRAD2-2	RAP1GAP	NA	chr1:21922708-21927680	inter
CUST_52061_PI429285431	5.85211	P	7.0110917	P	0.447828515532032	0	lncRNA	55592-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017584 range=chr22:18975276-19008329 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017584 range=chr22:18975276-19008329 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 18975276	 18978275	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44188_PI429285431	0.91217643	A	0.9148472	A	0.998150475786328	0	lncRNA	48844-1_{1..798}	"gi|388454242|ref|NR_046701.1| Homo sapiens PRICKLE2 antisense RNA 2 (PRICKLE2-AS2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|388454242|ref|NR_046701.1| Homo sapiens PRICKLE2 antisense RNA 2 (PRICKLE2-AS2), non-coding RNA"	Chr3	 64089146	 64089943	+	100874242	NR_046701.1	NA	NA	NA	NA	NA	inter
CUST_46901_PI429285431	5.6849756	P	4.4418387	P	2.36712665387317	0	lncRNA	51022-1_{1..2086}	"gi|226823215|ref|NR_027486.1| Homo sapiens TBC1 domain family, member 3 pseudogene 2 (TBC1D3P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226823215|ref|NR_027486.1| Homo sapiens TBC1 domain family, member 3 pseudogene 2 (TBC1D3P2), non-coding RNA"	NA	NA	NA	NA	NA	NR_027486.1	NA	NA	NA	NA	NA	Unknown
CUST_26283_PI429285431	0.89316994	A	0.9068247	A	0.990579891452807	0	lncRNA	27789-1_{1..550}	lnc-GSG1L-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GSG1L-1:3	chr16	 27729564	 27730113	-	lnc-GSG1L-1	lnc-GSG1L-1:3	ENSG00000261329.1	CTD-2049O4.1	KIAA0556	"hg19_refFlat_KIAA0556:range=chr16:27561492-277899505'pad=0,hg19_refFlat_KIAA0556:range=chr16:27561492-277899505'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10chr16:27719564-27739615"	NA	inner
CUST_26073_PI429285431	4.125343	P	4.109035	P	1.01136797407783	0	lncRNA	27586-1_{1..598}	lnc-DBX1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DBX1-3:1	chr11	 20002783	 20003380	-	lnc-DBX1-3	lnc-DBX1-3:1	ENSG00000254542.1	NAV2-AS3	NAV2	NA	chr11:19992783-20012883	inner
CUST_48394_PI429285431	3.096363	A	3.1580493	P	0.958143534563068	0	lncRNA	52247-1_{1..2794}	hg19_lincRNAsTranscripts_TCONS_l2_00001463 range=chr1:117315572-117325219 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001463 range=chr1:117315572-117325219 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	117315572	117318365	-	NA	NA	NA	NA	CD2	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30chr1:117305572-117311851"	NA	inter
CUST_49617_PI429285431	5.751546	P	6.151887	P	0.757679174623061	0	lncRNA	53405-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00025633 range=chr7:6676931-6696870 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025633 range=chr7:6676931-6696870 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  6676931	  6679930	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24577_PI429285431	4.377958	P	5.151062	P	0.585157136814816	0	lncRNA	26125-1_{1..486}	lnc-GLUD1-4:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLUD1-4:11	chr10	 89086387	 89086872	-	lnc-GLUD1-4	lnc-GLUD1-4:11	ENSG00000223482.1	RP11-322M19.1	NA	NA	NA	inter
CUST_10799_PI429285431	7.607635	P	8.132735	P	0.694910940695841	0	lncRNA	12336-1_{1..621}	lnc-HEATR6-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-HEATR6-1:4	chr17	 58165558	 58166178	-	lnc-HEATR6-1	lnc-HEATR6-1:4	XLOC_012538	linc-HEATR6-2	HEATR6	NA	chr17:58155558-58156292	inter
CUST_43806_PI429285431	4.079856	P	3.6914322	P	1.30896253028643	0	lncRNA	48532-2_{3001..6000}	"gi|392871560|ref|NR_052013.2| Homo sapiens neuroblastoma amplified sequence (NBAS), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392871560|ref|NR_052013.2| Homo sapiens neuroblastoma amplified sequence (NBAS), transcript variant 2, non-coding RNA"	Chr2	 15310032	 15313031	-	51594	NR_052013.2	NA	NA	NA	NA	NA	inter
CUST_47065_PI429285431	8.396006	P	9.0399475	P	0.63996215629195	0	lncRNA	51152-1_{1..1212}	"gi|328802708|ref|NR_038103.1| Homo sapiens trans-2,3-enoyl-CoA reductase (TECR), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|328802708|ref|NR_038103.1| Homo sapiens trans-2,3-enoyl-CoA reductase (TECR), transcript variant 2, non-coding RNA"	Chr19	 14640379	 14641590	+	9524	NR_038103.1	NA	NA	NA	NA	NA	inter
CUST_47778_PI429285431	1.2815326	A	1.3715453	A	0.939514478660597	0	lncRNA	51705-3_{6001..6761}	"gi|385137086|ref|NR_047624.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 54, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137086|ref|NR_047624.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 54, non-coding RNA"	ChrY	 15366259	 15367019	-	7404	NR_047624.1	NA	NA	NA	NA	NA	inter
CUST_9526_PI429285431	1.5863116	A	1.5034475	A	1.05911856239107	0	lncRNA	11034-1_{1..407}	lnc-ICOSLG-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ICOSLG-5:1	chr21	 45588000	 45588406	-	lnc-ICOSLG-5	lnc-ICOSLG-5:1	XLOC_014111	linc-CSTB-6	NA	NA	NA	inter
CUST_8889_PI429285431	1.4420199	A	1.5449529	A	0.931138061679512	0	lncRNA	10426-1_{1..484}	lnc-ZYX-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZYX-1:2	chr7	143112630	143113113	+	lnc-ZYX-1	lnc-ZYX-1:2	ENSG00000229153	AC092214.10	EPHA1	NA	chr7:143102630-143105985	inter
CUST_39947_PI429285431	2.3373375	A	2.9694278	A	0.645240857568574	0	lncRNA	40821-1_{1..1419}	n406932|NR_024426|lncRNA|Homosapiens||RefGeneNoncode|NR_024426||0.8482960|-0.1131072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406932|NR_024426|lncRNA|Homosapiens||RefGeneNoncode|NR_024426||0.8482960|-0.1131072	chr22	 44576769	 44578187	+	NA	NA	NA	NA	PARVG	NA	chr22:44568836-44593247	inner
CUST_28750_PI429285431	4.673443	P	5.057695	P	0.766176138061793	0	lncRNA	30453-1_{1..524}	n326148|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096165|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096165|0.1710930|-0.2049597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326148|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000096165|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000096165|0.1710930|-0.2049597	chr1	241287155	241287678	-	NA	NA	NA	NA	RGS7	NA	chr1:241277155-241297772	inner
CUST_21832_PI429285431	3.4650745	P	2.9524941	A	1.42659952666631	0	lncRNA	23442-1_{1..2507}	lnc-UBA5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-UBA5-1:3	chr3	132592385	132594891	+	lnc-UBA5-1	lnc-UBA5-1:3	ENSG00000248724.1	NPHP3-AS1	NA	NA	NA	inter
CUST_47147_PI429285431	10.27951	P	10.518743	P	0.847195599017573	0	lncRNA	51228-1_{1..1521}	"gi|336391143|ref|NR_038456.1| Homo sapiens N-ethylmaleimide-sensitive factor attachment protein, alpha (NAPA), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336391143|ref|NR_038456.1| Homo sapiens N-ethylmaleimide-sensitive factor attachment protein, alpha (NAPA), transcript variant 2, non-coding RNA"	Chr19	 47990891	 47992411	-	8775	NR_038456.1	NA	NA	NA	NA	NA	inter
CUST_3944_PI429285431	1.8546115	A	1.6477816	A	1.1541493302846	0	lncRNA	3914-1_{1..500}	"transcript_id ""ENST00000529219.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000529219.1"" | genecode_v17"	chr11	 50257789	 50258288	+	ENSG00000254518.1	ENST00000529219.1	RP11-347H15.4	RP11-347H15.4-001	NA	NA	NA	inter
CUST_47651_PI429285431	0.87896097	A	1.231081	A	0.783432003904643	0	lncRNA	51635-2_{3001..3456}	"gi|211904186|ref|NR_024359.1| Homo sapiens long intergenic non-protein coding RNA 86 (LINC00086), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|211904186|ref|NR_024359.1| Homo sapiens long intergenic non-protein coding RNA 86 (LINC00086), non-coding RNA"	NW_004070887.1	   356086	   356541	+	399668	NR_024359.1	NA	NA	NA	NA	NA	Unknown
CUST_48164_PI429285431	3.6272254	P	3.5720932	P	1.03895430253391	0	lncRNA	52030-1_{1..1969}	"gi|397137794|ref|XR_159283.1| PREDICTED: Homo sapiens uncharacterized LOC400590 (LOC400590), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397137794|ref|XR_159283.1| PREDICTED: Homo sapiens uncharacterized LOC400590 (LOC400590), misc_RNA"	NA	NA	NA	NA	NA	XR_159283.1	NA	NA	NA	"hg19_refFlat_RPL41:range=chr12:56510572-565113085'pad=0,hg19_refFlat_RPL41:range=chr12:56510572-565113085'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80"	NA	Unknown
CUST_4506_PI429285431	7.6355324	P	8.179989	P	0.685649608020191	0	lncRNA	4455-1_{1..194}	"transcript_id ""ENST00000538901.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000538901.1"" | genecode_v17"	chr12	128425140	128425333	-	ENSG00000256971.1	ENST00000538901.1	LINC00508	LINC00508-001	NA	NA	NA	inter
CUST_51461_PI429285431	3.4603105	P	3.9354753	P	0.719384609536335	0	lncRNA	55038-1_{1..873}	hg19_lincRNAsTranscripts_TCONS_l2_00010121 range=chr16:33297970-33319250 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010121 range=chr16:33297970-33319250 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 33297970	 33298842	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014517	3.5524087	P	4.6726904	P	0.460003996364463	0	lncRNA	ENST00000434985	XR_110187	XR_110187	NA	NA	LOC100507613	NA	ENST00000434985	THC2677579	NA	"PREDICTED: Homo sapiens hypothetical LOC100507613 (LOC100507613), miscRNA [XR_110187]"	chr6:148058621-148058680	hs|6q24.3	Agilent_HUMAN_G3V2	ENST00000434985	ENST00000434985	chr6	148058621	148058680	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43594_PI429285431	3.317597	P	2.1540194	A	2.24012245728325	0	lncRNA	48358-1_{1..582}	"gi|397138900|ref|XR_159113.1| PREDICTED: Homo sapiens uncharacterized LOC100996555 (LOC100996555), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138900|ref|XR_159113.1| PREDICTED: Homo sapiens uncharacterized LOC100996555 (LOC100996555), misc_RNA"	Chr1	147899645	147900226	+	100996555	XR_159113.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0003013	2.9193316	A	1.9321139	A	1.98235823813324	0	lncRNA	TCONS_00006166	NA	NA	NA	NA	XLOC_002771	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002771), lincRNA [TCONS_00006166]"	chr3:117367846-117374804	hs|3q13.32	Agilent_HUMAN_G3V2	TCONS_00006166	TCONS_00006166	chr3	117367846	117374804	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50273_PI429285431	5.9624124	P	5.92715	P	1.02474318824036	0	lncRNA	53996-1_{1..1445}	hg19_lincRNAsTranscripts_TCONS_l2_00029381 range=chr9:69616263-69652124 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029381 range=chr9:69616263-69652124 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 69616263	 69617707	-	NA	NA	NA	NA	LOC100132154	NA	chr9:69606263-69662124	inter
CUST_28196_PI429285431	0.88077617	A	0.88658345	A	0.995982790900934	0	lncRNA	29824-1_{1..717}	n325477|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322867|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322867|-1.1507000|-0.3381068	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325477|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322867|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322867|-1.1507000|-0.3381068	chr2	  3869648	  3870364	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00318390	4.391491	P	4.3727565	P	1.01307044706473	0	lncRNA	THC2558187	NA	NA	NA	NA	XLOC_l2_013314	NA	NA	THC2558187	NA	"BROAD Institute lincRNA (XLOC_l2_013314), lincRNA [TCONS_l2_00027075]"	chr7:026479997-026480056	hs|7p15.2	Agilent_HUMAN_G3V2	THC2558187	THC2558187	chr7	 26479997	 26480056	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42848_PI429285431	0.88427055	A	0.89806956	A	0.990480851806909	0	lncRNA	45890-1_{1..93}	ENST00000391251 ncrna:snoRNA chromosome:GRCh37:13:40431272:40431364:-1 gene:ENSG00000212553 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391251 ncrna:snoRNA chromosome:GRCh37:13:40431272:40431364:-1 gene:ENSG00000212553 gene_biotype:snoRNA transcript_biotype:snoRNA	chr13	 40431272	 40431364	-	ENSG00000212553	ENST00000391251	NA	NA	NA	NA	NA	inter
CUST_29791_PI429285431	6.594409	P	6.9199715	P	0.797987194246652	0	lncRNA	31554-1_{1..722}	n333499|BC032904|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000092860|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000092860|-1.0757500|-0.2818722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333499|BC032904|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000092860|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000092860|-1.0757500|-0.2818722	chr4	176733460	176734181	-	NA	NA	NA	NA	GPM6A	NA	chr4:176723460-176744182	inner
CUST_15694_PI429285431	0.8832787	A	0.9174301	A	0.976606036121918	0	lncRNA	17381-1_{1..939}	lnc-ZNF74-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF74-1:3	chr22	 20852954	 20853892	+	lnc-ZNF74-1	lnc-ZNF74-1:3	XLOC_014159	linc-MED15	KLHL22	NA	chr22:20842954-20850170	inter
CUST_27554_PI429285431	0.88101506	A	0.8887415	A	0.994658755343093	0	lncRNA	29134-1_{1..1859}	n324745|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319011|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319011|0.0593202|-0.4184905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324745|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319011|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319011|0.0593202|-0.4184905	chr22	 18706398	 18708256	+	NA	NA	NA	NA	LOC642643	NA	chr22:18703328-18737841	inter
CUST_12472_PI429285431	9.30149	P	8.955262	P	1.27123257592232	0	lncRNA	14084-1_{1..761}	lnc-RP11-552I14.1.1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-552I14.1.1-1:8	chr12	103571827	103572587	+	lnc-RP11-552I14.1.1-1	lnc-RP11-552I14.1.1-1:8	XLOC_009858	linc-STAB2-2	NA	NA	NA	inter
LNCA_32_P125832	0.90573525	A	1.9915601	A	0.471122830019931	0	lncRNA	XR_109470	XR_109470	XR_109470	100128893	Hs.514745	LOC100128893	uncharacterized LOC100128893	NA	THC2605115	NA	"PREDICTED: Homo sapiens hypothetical LOC100128893 (LOC100128893), miscRNA [XR_109470]"	chr18:19747929-19747870	hs|18q11.2	Agilent_HUMAN_G3V2	XR_109470	XR_109470	chr18	 19747870	 19747929	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17546_PI429285431	0.91089714	A	1.0948535	A	0.880285640870564	0	lncRNA	19272-1_{1..2586}	lnc-ITSN1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITSN1-2:5	chr21	 35349029	 35351614	+	lnc-ITSN1-2	lnc-ITSN1-2:5	XLOC_013921	linc-SLC5A3-2	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90"	NA	inter
CUST_15638_PI429285431	5.7506313	P	6.141872	P	0.762473604518021	0	lncRNA	17328-1_{1..1366}	lnc-FOXC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXC1-1:1	chr6	  1606251	  1607616	+	lnc-FOXC1-1	lnc-FOXC1-1:1	XLOC_005125	linc-FOXC1-1	FOXC1	NA	chr6:1610681-1614132	inter
CUST_40347_PI429285431	0.893523	A	0.9185482	A	0.982803431464145	0	lncRNA	41150-1_{1..2927}	n409065|NR_033125|lncRNA|Homosapiens||RefGeneNoncode|NR_033125||1.4075600|-0.4489273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409065|NR_033125|lncRNA|Homosapiens||RefGeneNoncode|NR_033125||1.4075600|-0.4489273	chrX	110924345	110927271	+	NA	NA	NA	NA	ALG13	NA	chrX:110924346-110943623	inner
CUST_43965_PI429285431	0.899318	A	0.99999976	A	0.932592181608747	0	lncRNA	48670-1_{1..2272}	"gi|190570177|ref|NR_023391.1| Homo sapiens cytochrome P450, family 4, subfamily F, polypeptide 30, pseudogene (CYP4F30P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|190570177|ref|NR_023391.1| Homo sapiens cytochrome P450, family 4, subfamily F, polypeptide 30, pseudogene (CYP4F30P), non-coding RNA"	Chr2	131437623	131439894	+	100132708	NR_023391.1	NA	NA	NA	NA	NA	inter
CUST_12504_PI429285431	3.1844485	A	3.0693607	A	1.08304095557602	0	lncRNA	14115-1_{1..335}	lnc-C6orf70-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C6orf70-2:1	chr6	170138790	170139124	+	lnc-C6orf70-2	lnc-C6orf70-2:1	XLOC_005555	linc-C6orf70	TCTE3	"hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0,hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.10;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30chr6:170140215-170149088"	NA	inter
CUST_19786_PI429285431	3.888525	P	4.0443797	P	0.897600447302635	0	lncRNA	21444-1_{1..595}	lnc-MOCS2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MOCS2-1:2	chr5	 52285920	 52286514	-	lnc-MOCS2-1	lnc-MOCS2-1:2	ENSG00000249899.1	CTD-2175A23.1	ITGA2	NA	chr5:52285156-52296108	inter
LNCA_21_P0001924	0.8921622	A	0.90430295	A	0.991619983111684	0	lncRNA	ENST00000436245	NA	NA	NA	NA	XLOC_001700	NA	ENST00000436245	NA	NA	"BROAD Institute lincRNA (XLOC_001700), lincRNA [TCONS_00003028]"	chr2:147659441-147659500	hs|2q22.3	Agilent_HUMAN_G3V2	ENST00000436245	ENST00000436245	chr2	147659441	147659500	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41371_PI429285431	0.88095015	A	0.8843832	A	0.997623220096668	0	lncRNA	42456-1_{1..86}	ENST00000583710 ncrna:miRNA chromosome:GRCh37:2:232227419:232227504:1 gene:ENSG00000263641 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583710 ncrna:miRNA chromosome:GRCh37:2:232227419:232227504:1 gene:ENSG00000263641 gene_biotype:miRNA transcript_biotype:miRNA	chr2	232227419	232227504	+	ENSG00000263641	ENST00000583710	NA	NA	NA	NA	NA	inner
LNCA_21_P0012420	0.8905851	A	0.90203863	A	0.992092448460497	0	lncRNA	BX649053	NA	BX649053	NA	Hs.639850	XLOC_l2_010056	NA	ENST00000454508	THC2530059	NA	"BROAD Institute lincRNA (XLOC_l2_010056), lincRNA [TCONS_l2_00019077]"	chr3:194430013-194430072	hs|3q29	Agilent_HUMAN_G3V2	BX649053	BX649053	chr3	194430013	194430072	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47188_PI429285431	0.908692	A	0.906166	A	1.00175242348059	0	lncRNA	51263-1_{1..938}	"gi|341915861|ref|XR_109498.2| PREDICTED: Homo sapiens uncharacterized LOC100506374 (LOC100506374), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915861|ref|XR_109498.2| PREDICTED: Homo sapiens uncharacterized LOC100506374 (LOC100506374), misc_RNA"	NA	NA	NA	NA	NA	XR_109498.2	NA	NA	NA	NA	NA	Unknown
CUST_24975_PI429285431	1.9617705	A	2.764793	A	0.573147154099473	0	lncRNA	26515-1_{1..487}	lnc-FANCC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FANCC-1:1	chr9	 97697055	 97697541	-	lnc-FANCC-1	lnc-FANCC-1:1	ENSG00000224764.1	RP11-54O15.3	C9orf3	NA	chr9:97687055-97707228	inner
CUST_39025_PI429285431	0.89492667	A	1.9682806	A	0.475212954419045	0	lncRNA	40005-1_{1..837}	n385379|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xjb.2||-0.8582470|-0.3839009	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n385379|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xjb.2||-0.8582470|-0.3839009	chr8	 32785487	 32786323	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24625_PI429285431	1.7066256	A	0.922979	A	1.72147663518407	0	lncRNA	26174-1_{1..641}	lnc-CTD-2117L12.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2117L12.1.1-1:1	chr5	 58112871	 58113511	-	lnc-CTD-2117L12.1.1-1	lnc-CTD-2117L12.1.1-1:1	ENSG00000248475.1	RP11-479O16.1	RAB3C	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90chr5:58102871-58122926"	NA	inner
CUST_26743_PI429285431	12.635348	P	12.553576	P	1.05831712780465	0	lncRNA	28236-1_{1..341}	n323786|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058774|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058774|0.3935070|-0.0921729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323786|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058774|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058774|0.3935070|-0.0921729	chrX	153215503	153215843	-	NA	NA	NA	NA	HCFC1	NA	chrX:153213008-153226581	inner
CUST_10801_PI429285431	2.6333563	A	3.1073089	A	0.719989314244642	0	lncRNA	12338-1_{1..2694}	lnc-IGFL1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGFL1-1:4	chr19	 46717054	 46719747	+	lnc-IGFL1-1	lnc-IGFL1-1:4	XLOC_013100	linc-IGFL1-1	IGFL1	NA	chr19:46722592-46728714	inter
CUST_33444_PI429285431	4.9463096	P	5.235756	P	0.818215969295475	0	lncRNA	35022-1_{1..775}	n340178|BC027847|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2639|NULL|2.0704800|-0.0964227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n340178|BC027847|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2639|NULL|2.0704800|-0.0964227	chr10	135137575	135138349	-	NA	NA	NA	NA	CALY	NA	chr10:135138928-135148249	inter
CUST_22167_PI429285431	5.1836004	P	5.2898803	P	0.928980423512922	0	lncRNA	23769-1_{1..1279}	lnc-SPATC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPATC1-1:1	chr8	145105843	145107121	+	lnc-SPATC1-1	lnc-SPATC1-1:1	ENSG00000204791.4	CTD-3065J16.6	SPATC1	NA	chr8:145095843-145102015	inter
CUST_11884_PI429285431	0.87935704	A	0.8792114	A	1.00010095505099	0	lncRNA	13466-1_{1..553}	lnc-FAM190B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM190B-2:2	chr10	 87200838	 87201390	+	lnc-FAM190B-2	lnc-FAM190B-2:2	XLOC_008539	linc-OPN4-4	NA	NA	NA	inter
LNCA_21_P0003816	0.8804104	A	0.8845494	A	0.997135175284283	0	lncRNA	TCONS_00008695	NA	NA	NA	NA	XLOC_004209	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004209), lincRNA [TCONS_00008695]"	chr4:185814128-185814069	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00008695	TCONS_00008695	chr4	185814069	185814128	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25476_PI429285431	0.90380836	A	0.9129886	A	0.993656945175704	0	lncRNA	27006-1_{1..494}	lnc-ZW10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZW10-1:1	chr11	113657486	113657979	-	lnc-ZW10-1	lnc-ZW10-1:1	ENSG00000256850.1	RP11-661I21.2	USP28	NA	chr11:113659809-113667508	inter
CUST_25804_PI429285431	4.188672	P	4.61148	P	0.745971283775209	0	lncRNA	27325-1_{1..539}	lnc-FAM174B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM174B-4:1	chr15	 92715250	 92715788	-	lnc-FAM174B-4	lnc-FAM174B-4:1	ENSG00000258761.1	RP11-24J19.1	SLCO3A1	"hg19_refFlat_SLCO3A1:range=chr15:92397139-927063655'pad=0,hg19_refFlat_SLCO3A1:range=chr15:92397139-927063655'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_SLCO3A1:range=chr15:92397139-927150925'pad=0,hg19_refFlat_SLCO3A1:range=chr15:92397139-927150925'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30chr15:92705250-92715665"	NA	inner
CUST_20000_PI429285431	6.000244	P	6.183164	P	0.880918221251146	0	lncRNA	21653-1_{1..1123}	lnc-RP1L1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP1L1-2:1	chr8	 10404940	 10406062	-	lnc-RP1L1-2	lnc-RP1L1-2:1	ENSG00000253649.1	RP11-981G7.4	PRSS55	NA	chr8:10394940-10411676	inner
CUST_3803_PI429285431	0.87901175	A	0.8775716	A	1.00099873431538	0	lncRNA	3771-1_{1..634}	"transcript_id ""ENST00000600953.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600953.1"" | genecode_v17"	chr10	109800814	109801447	-	ENSG00000229981.2	ENST00000600953.1	RP11-215N21.1	RP11-215N21.1-015	NA	NA	NA	inter
CUST_20815_PI429285431	0.8954944	A	1.7322209	A	0.5599125801159	0	lncRNA	22446-1_{1..554}	lnc-GNG11-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNG11-2:2	chr7	 93640353	 93640906	+	lnc-GNG11-2	lnc-GNG11-2:2	ENSG00000236861.2	AC006378.2	BET1	NA	chr7:93630353-93633690	inter
CUST_10376_PI429285431	0.8830858	A	1.0526451	A	0.889114237381052	0	lncRNA	11904-1_{1..590}	lnc-ABHD12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABHD12-1:1	chr20	 25227084	 25227673	-	lnc-ABHD12-1	lnc-ABHD12-1:1	XLOC_013706	linc-VSX1-3	PYGB	NA	chr20:25228706-25237480	inter
LNCA_19_P00322262	0.89411664	A	0.8812747	A	1.00894108937046	0	lncRNA	TCONS_00011374	NA	NA	NA	NA	XLOC_005465	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005465), lincRNA [TCONS_00011374]"	chr6:132485572-132485631	hs|6q23.2	Agilent_HUMAN_G3V2	TCONS_00011374	TCONS_00011374	chr6	132485572	132485631	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003877	4.6058397	P	4.6386642	P	0.977504670011859	0	lncRNA	TCONS_00008979	NA	NA	NA	NA	XLOC_003834	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003834), lincRNA [TCONS_00008979]"	chr4:189406969-189407028	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008979	TCONS_00008979	chr4	189406969	189407028	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41425_PI429285431	1.5338424	A	1.7542323	A	0.858333433538196	0	lncRNA	42584-1_{1..80}	ENST00000384827 ncrna:miRNA chromosome:GRCh37:14:101518783:101518862:1 gene:ENSG00000207558 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384827 ncrna:miRNA chromosome:GRCh37:14:101518783:101518862:1 gene:ENSG00000207558 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101518783	101518862	+	ENSG00000207558	ENST00000384827	NA	NA	NA	NA	NA	inter
CUST_50588_PI429285431	3.4217947	P	5.750801	P	0.199021155601794	0	lncRNA	54279-1_{1..715}	hg19_lincRNAsTranscripts_TCONS_l2_00003008 range=chr10:43250484-43265051 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003008 range=chr10:43250484-43265051 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 43250484	 43251198	+	NA	NA	NA	NA	LOC100505906	NA	chr10:43249164-43265069	inter
CUST_2937_PI429285431	2.8447878	A	3.7663174	P	0.527948971917145	0	lncRNA	2918-1_{1..889}	"transcript_id ""ENST00000445293.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445293.2"" | genecode_v17"	chr7	135777673	135778561	+	ENSG00000232053.2	ENST00000445293.2	AC009784.3	AC009784.3-001	NA	NA	NA	inter
CUST_46093_PI429285431	0.8940527	A	0.8925166	A	1.00106531042453	0	lncRNA	50359-1_{1..2417}	"gi|310122931|ref|XR_110373.1| PREDICTED: Homo sapiens uncharacterized LOC100507175 (LOC100507175), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310122931|ref|XR_110373.1| PREDICTED: Homo sapiens uncharacterized LOC100507175 (LOC100507175), misc_RNA"	NA	NA	NA	NA	NA	XR_110373.1	NA	NA	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-28.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-12.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.16;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10"	NA	Unknown
LNCA_21_P0001285	0.88398457	A	0.88507587	A	0.999243854504052	0	lncRNA	TCONS_00000894	NA	NA	NA	NA	XLOC_000147	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000147), lincRNA [TCONS_00000894]"	chr1:38628162-38628221	hs|1p34.3	Agilent_HUMAN_G3V2	TCONS_00000894	TCONS_00000894	chr1	 38628162	 38628221	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004419	0.8842502	A	0.8854186	A	0.999190454692992	0	lncRNA	TCONS_00010401	NA	NA	NA	NA	XLOC_004923	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004923), lincRNA [TCONS_00010401]"	chr5:90540653-90538777	hs|5q14.3	Agilent_HUMAN_G3V2	TCONS_00010401	TCONS_00010401	chr5	 90538777	 90540653	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012402	0.8845173	A	0.91860497	A	0.976649177933335	0	lncRNA	ENST00000469216	XR_108494	XR_108494	NA	NA	XLOC_l2_009899	NA	ENST00000469216	THC2641885	NA	"PREDICTED: Homo sapiens hypothetical LOC100507274 (LOC100507274), miscRNA [XR_108494]"	chr3:137496322-137496381	hs|3q22.3	Agilent_HUMAN_G3V2	ENST00000469216	ENST00000469216	chr3	137496322	137496381	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5962_PI429285431	0.8828339	A	1.1855791	A	0.810708289596147	0	lncRNA	5891-1_{1..2063}	"transcript_id ""ENST00000419257.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419257.1"" | genecode_v17"	chr17	 70068474	 70070536	+	ENSG00000226101.1	ENST00000419257.1	AC007461.2	AC007461.2-001	NA	NA	NA	inter
CUST_48325_PI429285431	2.2995386	A	3.1786575	P	0.543699384487529	0	lncRNA	52183-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00001143 range=chr1:36522535-36547930 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001143 range=chr1:36522535-36547930 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 36522535	 36525534	-	NA	NA	NA	NA	EIF2C3	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-58.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00chr1:36512535-36522063"	NA	inter
CUST_29086_PI429285431	0.8785727	A	0.87865347	A	0.999944016069385	0	lncRNA	30817-1_{1..310}	n326579|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025777|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025777|-0.9120560|-0.2144442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326579|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025777|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025777|-0.9120560|-0.2144442	chr1	 65304897	 65305206	-	NA	NA	NA	NA	JAK1	NA	chr1:65298906-65316008	inner
CUST_656_PI429285431	5.821547	P	5.942765	P	0.919411107041426	0	lncRNA	648-1_{1..578}	"transcript_id ""ENST00000437610.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437610.1"" | genecode_v17"	chr2	  2874330	  2874907	-	ENSG00000228391.1	ENST00000437610.1	AC011995.3	AC011995.3-001	NA	NA	NA	inter
CUST_19969_PI429285431	0.88392293	A	1.2224237	A	0.790862739296116	0	lncRNA	21623-1_{1..403}	lnc-DOCK8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DOCK8-1:1	chr9	   495238	   495640	+	lnc-DOCK8-1	lnc-DOCK8-1:1	ENSG00000228115.1	RP11-165F24.5	KANK1	NA	chr9:504703-505610	inner
CUST_33787_PI429285431	2.8928769	A	3.0468075	A	0.898798361739914	0	lncRNA	35340-1_{1..1530}	n340575|CR624806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3037|NULL|-1.1042500|-0.1348624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340575|CR624806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3037|NULL|-1.1042500|-0.1348624	chr5	107004861	107006390	+	NA	NA	NA	NA	EFNA5	"hg19_refFlat_EFNA5:range=chr5:106716956-1070063145'pad=0,hg19_refFlat_EFNA5:range=chr5:106716956-1070063145'pad=0 3'pad=0 strand=- repeatMasking=none,-100.40chr5:106994861-107006596"	NA	inner
CUST_29686_PI429285431	3.2706544	P	3.5661411	P	0.814797410269481	0	lncRNA	31448-1_{1..943}	n333343|AY255622|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085536|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085536|7.7642700|-0.0352706	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333343|AY255622|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085536|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085536|7.7642700|-0.0352706	chr17	 72366665	 72367607	+	NA	NA	NA	NA	GPR142	NA	chr17:72363645-72368739	inner
LNCA_19_P00803334	4.2001705	P	4.157352	P	1.03012434942414	0	lncRNA	TCONS_00019576	NA	NA	NA	NA	XLOC_009375	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009375), lincRNA [TCONS_00019576]"	chr11:11657122-11657063	hs|11p15.3	Agilent_HUMAN_G3V2	TCONS_00019576	TCONS_00019576	chr11	 11657063	 11657122	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_252_PI429201921	0.96074855	A	0.9093817	A	1.03624622783343	0	lncRNA	189-2_{3001..6000}	TC0Y000329.hg.1	TCONS_l2_00031052-XLOC_l2_015954 // Broad TUCP // linc-KDM5D-3 chrY:-:23557033-23563448 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:23557033-23563448	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031052-XLOC_l2_015954	linc-KDM5D-3	chrY	 23557033	 23563448	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47284_PI429285431	12.364889	P	12.299044	P	1.04669782100866	0	lncRNA	51353-1_{1..2149}	"gi|386642895|ref|NR_047692.1| Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class T (PIGT), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386642895|ref|NR_047692.1| Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class T (PIGT), transcript variant 6, non-coding RNA"	Chr20	 44044707	 44046855	+	51604	NR_047692.1	NA	NA	NA	NA	NA	inter
CUST_27710_PI429285431	2.3485303	A	2.3081703	A	1.02837040697945	0	lncRNA	29289-1_{1..477}	n324921|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080037|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080037|-1.1054700|-0.3390069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324921|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080037|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080037|-1.1054700|-0.3390069	chr20	 60437998	 60438474	+	NA	NA	NA	NA	CDH4	NA	chr20:60427998-60449963	inner
CUST_43193_PI429285431	6.6720133	P	7.11726	P	0.734458713894126	0	lncRNA	48007-1_{1..671}	ENST00000602881 havana:sense_intronic chromosome:GRCh37:13:51935701:51936371:-1 gene:ENSG00000269965 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602881 havana:sense_intronic chromosome:GRCh37:13:51935701:51936371:-1 gene:ENSG00000269965 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr13	 51935701	 51936371	-	ENSG00000269965	ENST00000602881	NA	NA	SERPINE3	"hg19_refFlat_SERPINE3:range=chr13:51915228-519361335'pad=0,hg19_refFlat_SERPINE3:range=chr13:51915228-519361335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30chr13:51925701-51936239"	NA	inner
LNCA_21_P0010120	5.9399714	P	6.6497545	P	0.611412053840048	0	lncRNA	TCONS_00028695	NA	NA	NA	NA	XLOC_013781	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013781), lincRNA [TCONS_00028695]"	chr20:47657039-47656980	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028695	TCONS_00028695	chr20	 47656980	 47657039	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47754_PI429285431	1.2590643	A	1.2042859	A	1.03869954532367	0	lncRNA	51695-3_{6001..6627}	"gi|385137080|ref|NR_047618.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 48, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137080|ref|NR_047618.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 48, non-coding RNA"	ChrY	 15366259	 15366885	-	7404	NR_047618.1	NA	NA	NA	NA	NA	inter
CUST_10071_PI429285431	0.9286933	A	0.92028075	A	1.00584816947675	0	lncRNA	11595-1_{1..339}	lnc-CHD2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD2-2:1	chr15	 93684687	 93685025	+	lnc-CHD2-2	lnc-CHD2-2:1	XLOC_011359	linc-MCTP2-6	NA	NA	NA	inter
LNCA_21_P0009716	2.6771731	A	0.9278345	A	3.36204398684079	0	lncRNA	TCONS_00027001	NA	NA	NA	NA	XLOC_013049	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013049), lincRNA [TCONS_00027001]"	chr19:35696135-35706552	hs|19q13.12	Agilent_HUMAN_G3V2	TCONS_00027001	TCONS_00027001	chr19	 35696135	 35706552	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1741_PI429285431	6.8275633	P	7.4587483	P	0.645645877233003	0	lncRNA	1727-1_{1..430}	"transcript_id ""ENST00000501725.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000501725.2"" | genecode_v17"	chr4	 37080204	 37080633	+	ENSG00000247810.2	ENST00000501725.2	RP11-103J17.1	RP11-103J17.1-002	NA	NA	NA	inter
CUST_14096_PI429285431	0.89312005	A	2.3252048	A	0.370594981496816	0	lncRNA	15742-1_{1..378}	lnc-FSCB-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-FSCB-1:7	chr14	 44862812	 44863189	-	lnc-FSCB-1	lnc-FSCB-1:7	XLOC_011006	linc-FBXO33-2	NA	NA	NA	inter
CUST_42314_PI429285431	7.58655	P	7.7214794	P	0.910714399395277	0	lncRNA	44943-1_{1..72}	ENST00000363536 ncrna:snoRNA chromosome:GRCh37:14:101450213:101450284:1 gene:ENSG00000200406 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363536 ncrna:snoRNA chromosome:GRCh37:14:101450213:101450284:1 gene:ENSG00000200406 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101450213	101450284	+	ENSG00000200406	ENST00000363536	NA	NA	NA	NA	NA	inter
CUST_25444_PI429285431	7.5167546	P	7.964012	P	0.733435803665335	0	lncRNA	26974-1_{1..2371}	lnc-ARFIP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARFIP1-2:1	chr4	153589550	153591920	+	lnc-ARFIP1-2	lnc-ARFIP1-2:1	ENSG00000248571.1	RP11-768B22.2	TMEM154	NA	chr4:153579550-153601259	inner
CUST_47175_PI429285431	2.8732696	A	3.3683877	P	0.709503595274666	0	lncRNA	51252-1_{1..1510}	"gi|383387810|ref|NR_047531.1| Homo sapiens sialic acid binding Ig-like lectin 17, pseudogene (SIGLEC17P), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|383387810|ref|NR_047531.1| Homo sapiens sialic acid binding Ig-like lectin 17, pseudogene (SIGLEC17P), transcript variant 3, non-coding RNA"	Chr19	 51670585	 51672094	+	284367	NR_047531.1	NA	NA	NA	NA	NA	inter
CUST_30664_PI429285431	3.9289665	P	4.633141	P	0.613793596564467	0	lncRNA	32446-1_{1..440}	n336108|X89742|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324379|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324379|0.6589410|-0.1485313	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336108|X89742|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324379|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324379|0.6589410|-0.1485313	chr20	 61990751	 61991190	-	NA	NA	NA	NA	CHRNA4	NA	chr20:61980751-61992695	inter
CUST_44273_PI429285431	1.4723883	A	2.463216	A	0.503189003650403	0	lncRNA	48912-1_{1..3000}	"gi|224451008|ref|NR_027038.1| Homo sapiens uncharacterized LOC401093 (LOC401093), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224451008|ref|NR_027038.1| Homo sapiens uncharacterized LOC401093 (LOC401093), transcript variant 1, non-coding RNA"	Chr3	151980405	151983404	-	401093	NR_027038.1	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90"	NA	inter
CUST_12425_PI429285431	6.745492	P	7.2008677	P	0.72932022117407	0	lncRNA	14038-1_{1..1056}	lnc-TLX1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TLX1-1:2	chr10	102953455	102954510	+	lnc-TLX1-1	lnc-TLX1-1:2	XLOC_008585	linc-BTRC-3	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40"	NA	inter
CUST_39889_PI429285431	4.9465475	P	2.7215781	A	4.67500983481487	0	lncRNA	40776-2_{3001..3566}	n406580|NR_024094|lncRNA|Homosapiens||RefGeneNoncode|NR_024094||10.4915000|-0.2550747	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406580|NR_024094|lncRNA|Homosapiens||RefGeneNoncode|NR_024094||10.4915000|-0.2550747	chr9	  6014018	  6014583	-	NA	NA	NA	NA	RANBP6	NA	chr9:6011019-6015640	inner
CUST_42304_PI429285431	2.881734	A	3.6932292	P	0.569791024011527	0	lncRNA	44928-1_{1..71}	ENST00000390962 ncrna:snoRNA chromosome:GRCh37:7:23436065:23436135:1 gene:ENSG00000212264 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390962 ncrna:snoRNA chromosome:GRCh37:7:23436065:23436135:1 gene:ENSG00000212264 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 23436065	 23436135	+	ENSG00000212264	ENST00000390962	NA	NA	IGF2BP3	NA	chr7:23426065-23446135	inner
LNCA_21_P0014169	1.0600469	A	0.91155887	A	1.1084072327046	0	lncRNA	XR_108681	XR_108681	XR_108681	NA	Hs.731073	LOC100506828	NA	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506828 (LOC100506828), miscRNA [XR_108681]"	chr6:17759980-17760039	hs|6p22.3	Agilent_HUMAN_G3V2	XR_108681	XR_108681	chr6	 17759980	 17760039	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012001	0.896328	A	0.9099647	A	0.990592291845342	0	lncRNA	ENST00000420187	NA	NA	NA	NA	XLOC_l2_007286	NA	ENST00000420187	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007286), lincRNA [TCONS_l2_00015312]"	chr2:40994483-40994542	hs|2p22.1	Agilent_HUMAN_G3V2	ENST00000420187	ENST00000420187	chr2	 40994483	 40994542	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26156_PI429285431	0.9047453	A	0.9072618	A	0.998257215535727	0	lncRNA	27667-1_{1..908}	lnc-ANKRD42-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD42-3:2	chr11	 83436235	 83437142	+	lnc-ANKRD42-3	lnc-ANKRD42-3:2	ENSG00000255311.1	RP11-160H12.2	DLG2	NA	chr11:83426235-83446433	inner
CUST_23864_PI429285431	0.8866845	A	0.9274933	A	0.97210981290625	0	lncRNA	25426-1_{1..315}	lnc-C1orf96-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf96-1:1	chr1	229406723	229407037	-	lnc-C1orf96-1	lnc-C1orf96-1:1	ENSG00000177788.5	RP5-1061H20.4	RAB4A	NA	chr1:229406879-229416775	inter
CUST_2724_PI429285431	1.0122452	A	0.89492416	A	1.08471876225323	0	lncRNA	2709-1_{1..479}	"transcript_id ""ENST00000435612.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435612.1"" | genecode_v17"	chr6	169686629	169687107	-	ENSG00000233085.1	ENST00000435612.1	XXyac-YX65C7_A.3	XXyac-YX65C7_A.3-001	NA	NA	NA	inter
CUST_29439_PI429285431	6.9903984	P	6.4025693	P	1.5029834258269	0	lncRNA	31195-1_{1..313}	n332826|AF065414|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000065524_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000065524_03|0.4044530|-0.4224080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332826|AF065414|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000065524_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000065524_03|0.4044530|-0.4224080	chr9	 70216592	 70216904	-	NA	NA	NA	NA	FOXD4L4	NA	chr9:70206592-70429731	inner
CUST_45257_PI429285431	1.0362451	A	0.8908421	A	1.10603956940049	0	lncRNA	49710-1_{1..2300}	"gi|299829247|ref|NR_002835.2| Homo sapiens HAS2 antisense RNA 1 (HAS2-AS1), antisense RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299829247|ref|NR_002835.2| Homo sapiens HAS2 antisense RNA 1 (HAS2-AS1), antisense RNA"	NA	NA	NA	NA	NA	NR_002835.2	NA	NA	NA	NA	NA	Unknown
CUST_36666_PI429285431	0.89377594	A	0.90912604	A	0.989416524752697	0	lncRNA	37855-2_{3001..6000}	n345160|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_709|NULL|-1.3084800|-0.3191685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345160|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_709|NULL|-1.3084800|-0.3191685	chr12	 32560112	 32563111	+	NA	NA	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-57.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-25.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0,hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-20.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.81;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10"	NA	inter
CUST_15948_PI429285431	4.3098345	P	4.366965	P	0.961173980784324	0	lncRNA	17645-1_{1..475}	lnc-SH3GL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SH3GL3-1:1	chr15	 84302146	 84302620	+	lnc-SH3GL3-1	lnc-SH3GL3-1:1	XLOC_011338	linc-ADAMTSL3	NA	NA	NA	inter
CUST_781_PI429285431	0.8816141	A	1.2459577	A	0.776822234594666	0	lncRNA	773-1_{1..564}	"transcript_id ""ENST00000423925.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423925.1"" | genecode_v17"	chr2	 16909391	 16909954	+	ENSG00000223536.1	ENST00000423925.1	AC008069.1	AC008069.1-002	NA	NA	NA	inter
CUST_23140_PI429285431	1.5416718	A	1.3034887	A	1.17950628009513	0	lncRNA	24711-1_{1..1121}	lnc-SEBOX-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEBOX-1:1	chr17	 26689586	 26690706	-	lnc-SEBOX-1	lnc-SEBOX-1:1	ENSG00000265618.1	CTB-96E2.7	SARM1	NA	chr17:26698987-26699881	inter
CUST_14906_PI429285431	6.493312	P	6.617312	P	0.917639882311365	0	lncRNA	16569-1_{1..866}	lnc-MPHOSPH6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MPHOSPH6-2:2	chr16	 82608754	 82609619	-	lnc-MPHOSPH6-2	lnc-MPHOSPH6-2:2	XLOC_012025	linc-MPHOSPH6-2	NA	NA	NA	inter
CUST_5031_PI429285431	3.239611	P	3.5330503	P	0.815954550520725	0	lncRNA	4971-1_{1..538}	"transcript_id ""ENST00000555599.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555599.1"" | genecode_v17"	chr14	101540206	101540743	-	ENSG00000230805.2	ENST00000555599.1	AL132709.1	AL132709.1-002	NA	NA	NA	inter
LNCA_21_P0007608	0.87968796	A	0.8829551	A	0.997737953412632	0	lncRNA	TCONS_00020521	NA	NA	NA	NA	XLOC_009838	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009838), lincRNA [TCONS_00020521]"	chr12:93486473-93486532	hs|12q22	Agilent_HUMAN_G3V2	TCONS_00020521	TCONS_00020521	chr12	 93486473	 93486532	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8044_PI429285431	0.8827658	A	0.89098907	A	0.994316277401551	0	lncRNA	9653-1_{1..3000}	lnc-KIAA1191-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1191-1:1	chr5	175721929	175724928	-	lnc-KIAA1191-1	lnc-KIAA1191-1:1	ENSG00000251133	ENST00000505928	C5orf25	"hg19_refFlat_SIMC1:range=chr5:175665512-1757724485'pad=0,hg19_refFlat_SIMC1:range=chr5:175665512-1757724485'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40chr5:175711929-175733503"	NA	inner
LNCA_21_P0010422	0.8793684	A	1.0729225	A	0.87444884833797	0	lncRNA	TCONS_00029616	NA	NA	NA	NA	XLOC_014271	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014271), lincRNA [TCONS_00029616]"	chr22:46949484-46949543	hs|22q13.31	Agilent_HUMAN_G3V2	TCONS_00029616	TCONS_00029616	chr22	 46949484	 46949543	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3259740	5.2152596	P	5.39024	P	0.885779552942371	0	lncRNA	ENST00000415242	XR_110159	XR_110159	NA	Hs.514963	NA	NA	ENST00000415242	THC2490934	NA	"PREDICTED: Homo sapiens FLJ44881 (FLJ44881), miscRNA [XR_110159]"	chr18:74402401-74402460	hs|18q23	Agilent_HUMAN_G3V2	ENST00000415242	ENST00000415242	chr18	 74402401	 74402460	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8450_PI429285431	4.145289	P	3.841998	P	1.23395604083612	0	lncRNA	10019-1_{1..2022}	lnc-SLC35G3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC35G3-1:3	chr17	 33568518	 33570539	-	lnc-SLC35G3-1	lnc-SLC35G3-1:3	ENSG00000247843	XLOC_012444	SLFN5	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50chr17:33570086-33579346"	NA	inter
CUST_36789_PI429285431	0.89488655	A	0.9052551	A	0.992838833032168	0	lncRNA	37961-1_{1..1081}	n345268|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_817|NULL|-1.2866000|-0.2706644	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345268|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_817|NULL|-1.2866000|-0.2706644	chr14	 69278383	 69279463	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6230_PI429285431	0.88792765	A	1.1619027	A	0.827037671127397	0	lncRNA	6156-1_{1..316}	"transcript_id ""ENST00000588245.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588245.1"" | genecode_v17"	chr18	 59348886	 59349201	+	ENSG00000267038.1	ENST00000588245.1	RP11-1096D5.2	RP11-1096D5.2-001	NA	NA	NA	inter
CUST_10008_PI429285431	2.4260237	A	3.0310607	P	0.65745451851472	0	lncRNA	11534-1_{1..331}	lnc-WDR60-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR60-5:1	chr7	158975136	158975466	+	lnc-WDR60-5	lnc-WDR60-5:1	XLOC_006323	TCONS_00014243	NA	NA	NA	inter
LNCA_21_P0014313	2.6663225	A	3.6484327	P	0.506238733244188	0	lncRNA	XR_109244	XR_109244	XR_109244	NA	NA	LOC100507378	uncharacterized LOC100507378	NA	THC2657004	NA	"PREDICTED: Homo sapiens hypothetical LOC100507378 (LOC100507378), miscRNA [XR_109244]"	chr16:3051933-3051992	hs|16p13.3	Agilent_HUMAN_G3V2	XR_109244	XR_109244	chr16	  3051933	  3051992	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010369	0.8797945	A	0.880841	A	0.999274884498945	0	lncRNA	XR_112264	XR_112264	XR_112264	NA	NA	LOC100506877	uncharacterized LOC100506877	ENST00000453866	THC2641788	NA	"PREDICTED: Homo sapiens hypothetical LOC100506877 (LOC100506877), miscRNA [XR_112264]"	chr22:48845134-48846954	hs|22q13.32	Agilent_HUMAN_G3V2	XR_112264	XR_112264	chr22	 48845134	 48846954	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7948_PI429285431	0.8972932	A	0.9053879	A	0.994404892761496	0	lncRNA	9560-1_{1..612}	lnc-CRYBA4-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:11	chr22	 27061429	 27062040	+	lnc-CRYBA4-1	lnc-CRYBA4-1:11	ENSG00000225783	XLOC_014192	NA	NA	NA	inter
CUST_31210_PI429285431	6.7574773	P	7.0646706	P	0.80821257290624	0	lncRNA	33003-1_{1..3000}	n337657|AK125468|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|37|NULL|-0.9797720|-0.1779769	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337657|AK125468|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|37|NULL|-0.9797720|-0.1779769	chrX	 39958944	 39961943	-	NA	NA	NA	NA	BCOR	NA	chrX:39948944-39972809	inner
CUST_1210_PI429285431	4.6389146	P	2.5193384	A	4.34566269907234	0	lncRNA	1201-1_{1..2666}	"transcript_id ""ENST00000568571.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568571.1"" | genecode_v17"	chr2	201689396	201692061	+	ENSG00000260006.1	ENST00000568571.1	RP11-469M7.1	RP11-469M7.1-001	BZW1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80chr2:201679396-201688569"	NA	inter
CUST_41632_PI429285431	3.837472	P	4.0601797	P	0.85695556230874	0	lncRNA	43025-1_{1..73}	ENST00000582903 ncrna:miRNA chromosome:GRCh37:8:117886967:117887039:-1 gene:ENSG00000264875 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582903 ncrna:miRNA chromosome:GRCh37:8:117886967:117887039:-1 gene:ENSG00000264875 gene_biotype:miRNA transcript_biotype:miRNA	chr8	117886967	117887039	-	ENSG00000264875	ENST00000582903	NA	NA	RAD21	NA	chr8:117876967-117887105	inner
LNCA_21_P0003965	0.8810374	A	2.2704542	A	0.38171907848722	0	lncRNA	ENST00000511758	NA	NA	NA	NA	XLOC_004282	NA	ENST00000511758	NA	NA	"BROAD Institute lincRNA (XLOC_004282), lincRNA [TCONS_00009345]"	chr5:7925393-7925452	hs|5p15.31	Agilent_HUMAN_G3V2	ENST00000511758	ENST00000511758	chr5	  7925393	  7925452	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008536	0.8813674	A	0.88197875	A	0.999576334242858	0	lncRNA	TCONS_00023112	NA	NA	NA	NA	XLOC_011038	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011038), lincRNA [TCONS_00023112]"	chr14:56981066-56981007	hs|14q22.3	Agilent_HUMAN_G3V2	TCONS_00023112	TCONS_00023112	chr14	 56981007	 56981066	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10629_PI429285431	3.7213	P	4.5105085	P	0.578661473608578	0	lncRNA	12160-1_{1..1331}	lnc-TCF12-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF12-1:6	chr15	 57599740	 57601070	+	lnc-TCF12-1	lnc-TCF12-1:6	XLOC_011264	linc-CGNL1-2	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20"	NA	inter
CUST_2928_PI429285431	6.280492	P	6.2000318	P	1.05735526865224	0	lncRNA	2909-1_{1..585}	"transcript_id ""ENST00000605692.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605692.1"" | genecode_v17"	chr7	128327342	128327926	+	ENSG00000270810.1	ENST00000605692.1	RP11-274B21.8	RP11-274B21.8-001	FAM71F2	NA	chr7:128317342-128323375	inter
CUST_6287_PI429285431	0.8860362	A	0.8949736	A	0.993824215426944	0	lncRNA	6211-1_{1..636}	"transcript_id ""ENST00000587174.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587174.1"" | genecode_v17"	chr18	 77547121	 77547756	+	ENSG00000266924.1	ENST00000587174.1	RP11-154H12.2	RP11-154H12.2-001	NA	NA	NA	inter
CUST_33529_PI429285431	0.8908058	A	0.88947344	A	1.00092394815485	0	lncRNA	35097-1_{1..3000}	n340269|AK091193|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2730|NULL|-1.0956700|-0.3407653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340269|AK091193|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2730|NULL|-1.0956700|-0.3407653	chr4	169696569	169699568	+	NA	NA	NA	NA	PALLD	NA	chr4:169686569-169709622	inner
LNCA_21_P0013738	4.416395	P	4.619831	P	0.868479680357119	0	lncRNA	DQ673932	NA	DQ673932	NA	NA	XLOC_l2_015315	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015315), lincRNA [TCONS_l2_00030040]"	chr9:102128039-102127202	hs|9q22.33	Agilent_HUMAN_G3V2	DQ673932	DQ673932	chr9	102127202	102128039	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47072_PI429285431	6.8724794	P	7.0080614	P	0.91030253285521	0	lncRNA	51157-1_{1..2831}	"gi|385648260|ref|NR_047666.1| Homo sapiens epidermal growth factor receptor pathway substrate 15-like 1 (EPS15L1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385648260|ref|NR_047666.1| Homo sapiens epidermal growth factor receptor pathway substrate 15-like 1 (EPS15L1), transcript variant 6, non-coding RNA"	Chr19	 16472389	 16475219	-	58513	NR_047666.1	NA	NA	NA	NA	NA	inter
CUST_32932_PI429285431	4.6648984	P	5.0487437	P	0.766392155828311	0	lncRNA	34552-2_{3001..4711}	n339601|CR627168|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2045|NULL|-0.9200360|-0.3587815	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339601|CR627168|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2045|NULL|-0.9200360|-0.3587815	chr3	137513814	137515524	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14362_PI429285431	0.89825827	A	0.9040416	A	0.995999325223965	0	lncRNA	16021-1_{1..935}	lnc-NPC2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NPC2-1:2	chr14	 74941007	 74941941	-	lnc-NPC2-1	lnc-NPC2-1:2	XLOC_011075	linc-TMEM90A	ISCA2	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20chr14:74949550-74951018"	NA	inter
CUST_44186_PI429285431	0.89459336	A	1.0768044	A	0.881351222850423	0	lncRNA	48842-1_{1..2594}	"gi|333944047|ref|NR_038283.1| Homo sapiens uncharacterized LOC100506994 (LOC100506994), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|333944047|ref|NR_038283.1| Homo sapiens uncharacterized LOC100506994 (LOC100506994), transcript variant 2, non-coding RNA"	Chr3	 62247494	 62250087	-	100506994	NR_038283.1	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_PTPRG:range=chr3:61547962-622789825'pad=0,hg19_refFlat_PTPRG:range=chr3:61547962-622789825'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40"	NA	inter
CUST_15504_PI429285431	2.7714944	A	3.0053263	A	0.850373238115762	0	lncRNA	17194-1_{1..3000}	lnc-RPP40-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-RPP40-1:1	chr6	  5054932	  5057931	-	lnc-RPP40-1	lnc-RPP40-1:1	XLOC_005592	linc-RPP40	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	inter
CUST_34981_PI429285431	4.5327625	P	4.7318316	P	0.871112467930702	0	lncRNA	36397-1_{1..2073}	n341905|AK092995|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4386|NULL|-1.0609000|-0.3366568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341905|AK092995|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4386|NULL|-1.0609000|-0.3366568	chr12	 47599681	 47601753	-	NA	NA	NA	NA	FAM113B	NA	chr12:47610052-47611754	inter
CUST_46985_PI429285431	4.75275	P	3.542821	P	2.31326252138019	0	lncRNA	51085-2_{3001..4094}	"gi|374081841|ref|NR_046177.1| Homo sapiens microtubule-associated protein, RP/EB family, member 2 (MAPRE2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374081841|ref|NR_046177.1| Homo sapiens microtubule-associated protein, RP/EB family, member 2 (MAPRE2), transcript variant 5, non-coding RNA"	Chr18	 32624614	 32625707	+	10982	NR_046177.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014812	0.8846343	A	0.88641715	A	0.998764985807655	0	lncRNA	XR_132644	XR_132644	XR_132644	NA	Hs.649947	LOC100652823	uncharacterized LOC100652823	NA	THC2687065	NA	"PREDICTED: Homo sapiens hypothetical LOC100652823 (LOC100652823), miscRNA [XR_132644]"	chr18:1367835-1367776	hs|18p11.32	Agilent_HUMAN_G3V2	XR_132644	XR_132644	chr18	  1367776	  1367835	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29873_PI429285431	5.135138	P	4.6578684	P	1.39210651392203	0	lncRNA	31636-1_{1..319}	n333873|L32168|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192878|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192878|-1.2888100|-0.2696699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333873|L32168|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192878|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192878|-1.2888100|-0.2696699	chr20	 31396844	 31397162	+	NA	NA	NA	NA	DNMT3B	NA	chr20:31386844-31397162	inner
CUST_12479_PI429285431	0.9177139	A	0.92092586	A	0.997776115485416	0	lncRNA	14091-1_{1..738}	lnc-CHMP4C-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHMP4C-3:1	chr8	 82761226	 82761963	+	lnc-CHMP4C-3	lnc-CHMP4C-3:1	XLOC_006862	linc-RALYL-2	SNX16	NA	chr8:82751226-82754521	inter
CUST_43708_PI429285431	1.936334	A	1.6354913	A	1.23186375349108	0	lncRNA	48455-3_{6001..9000}	"gi|323510632|ref|NR_024171.2| Homo sapiens Mdm4 p53 binding protein homolog (mouse) (MDM4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|323510632|ref|NR_024171.2| Homo sapiens Mdm4 p53 binding protein homolog (mouse) (MDM4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_024171.2	NA	NA	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20"	NA	Unknown
LNCA_21_P0009104	0.8838627	A	0.88636845	A	0.998264653909565	0	lncRNA	XR_109303	XR_109303	XR_109303	NA	NA	LOC100505709	uncharacterized LOC100505709	NA	THC2682267	NA	"PREDICTED: Homo sapiens hypothetical LOC100505709 (LOC100505709), miscRNA [XR_109303]"	chr16:56170589-56170648	hs|16q12.2	Agilent_HUMAN_G3V2	XR_109303	XR_109303	chr16	 56170589	 56170648	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38157_PI429285431	0.8784104	A	0.8817221	A	0.99770713711719	0	lncRNA	39229-1_{1..755}	n381379|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001icl.1||-0.5513660|-0.3310633	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381379|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001icl.1||-0.5513660|-0.3310633	chr1	247337903	247338657	-	NA	NA	NA	NA	ZNF124	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60chr1:247327903-247335318"	NA	inter
CUST_30905_PI429285431	7.2732697	P	6.1820993	P	2.130468026362	0	lncRNA	32693-1_{1..840}	n336938|BC094851|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000335152|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000335152|0.5307170|-0.2191302	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336938|BC094851|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000335152|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000335152|0.5307170|-0.2191302	chr9	132658074	132658913	-	NA	NA	NA	NA	FNBP1	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr9:132649466-132668914"	NA	inner
LNCA_21_P0005101	0.8955492	A	1.7574549	A	0.550225268310604	0	lncRNA	TCONS_00012390	NA	NA	NA	NA	XLOC_005126	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005126), lincRNA [TCONS_00012390]"	chr6:2284007-2284066	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_00012390	TCONS_00012390	chr6	  2284007	  2284066	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011762	5.6631937	P	5.7083006	P	0.969217997708056	0	lncRNA	TCONS_l2_00013223	NA	NA	NA	NA	XLOC_l2_007119	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007119), lincRNA [TCONS_l2_00013223]"	chr19:54109799-54109740	hs|19q13.42	Agilent_HUMAN_G3V2	TCONS_l2_00013223	TCONS_l2_00013223	chr19	 54109740	 54109799	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17164_PI429285431	2.3836021	A	2.5859003	A	0.869164888190924	0	lncRNA	18874-1_{1..1193}	lnc-SCD-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCD-1:8	chr10	102147791	102148983	+	lnc-SCD-1	lnc-SCD-1:8	XLOC_008583	linc-WNT8B	NA	NA	NA	inter
CUST_29331_PI429285431	6.742508	P	6.371338	P	1.29340133088093	0	lncRNA	31082-1_{1..404}	n332551|AY863198|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000434982|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000434982|-1.2244000|-0.1802784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332551|AY863198|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000434982|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000434982|-1.2244000|-0.1802784	chr1	112525316	112525719	-	NA	NA	NA	NA	KCND3	NA	chr1:112515316-112531777	inner
CUST_48327_PI429285431	0.90355754	A	0.90620327	A	0.998167800240982	0	lncRNA	52183-3_{6001..6294}	hg19_lincRNAsTranscripts_TCONS_l2_00001143 range=chr1:36522535-36547930 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001143 range=chr1:36522535-36547930 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 36528535	 36528828	-	NA	NA	NA	NA	EIF2C3	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-58.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00chr1:36512535-36522063"	NA	inter
CUST_42194_PI429285431	0.90369546	A	0.9279694	A	0.983315343654787	0	lncRNA	44262-1_{1..75}	ENST00000582138 ncrna:miRNA chromosome:GRCh37:6:140526389:140526463:1 gene:ENSG00000263514 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582138 ncrna:miRNA chromosome:GRCh37:6:140526389:140526463:1 gene:ENSG00000263514 gene_biotype:miRNA transcript_biotype:miRNA	chr6	140526389	140526463	+	ENSG00000263514	ENST00000582138	NA	NA	NA	NA	NA	inter
LNCA_21_P0009890	6.973814	P	7.0072536	P	0.97708799500572	0	lncRNA	ENST00000437696	NA	NA	NA	NA	XLOC_013686	NA	ENST00000437696	THC2767541	NA	"BROAD Institute lincRNA (XLOC_013686), lincRNA [TCONS_00028020]"	chr20:22664457-22664398	hs|20p11.21	Agilent_HUMAN_G3V2	ENST00000437696	ENST00000437696	chr20	 22664398	 22664457	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32229_PI429285431	0.91027206	A	1.1670138	A	0.836976058191457	0	lncRNA	33921-1_{1..1103}	n338802|AF339802|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1225|NULL|-1.2195000|-0.4273884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338802|AF339802|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1225|NULL|-1.2195000|-0.4273884	chr13	 92138064	 92139166	+	NA	NA	NA	NA	GPC5	NA	chr13:92128064-92149148	inner
CUST_42632_PI429285431	1.3116205	A	1.1928641	A	1.0857985030566	0	lncRNA	45505-1_{1..105}	ENST00000515935 ncrna:snoRNA chromosome:GRCh37:8:140120673:140120777:1 gene:ENSG00000251744 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515935 ncrna:snoRNA chromosome:GRCh37:8:140120673:140120777:1 gene:ENSG00000251744 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	140120673	140120777	+	ENSG00000251744	ENST00000515935	NA	NA	NA	NA	NA	inter
CUST_26610_PI429285431	7.588263	P	7.6765513	P	0.94063811694103	0	lncRNA	28113-1_{1..631}	lnc-DNAI1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DNAI1-1:1	chr9	 34523966	 34524596	+	lnc-DNAI1-1	lnc-DNAI1-1:1	ENSG00000230729.1	RP11-296L22.8	DNAI1	"hg19_refFlat_ENHO:range=chr9:34521463-345216935'pad=0,hg19_refFlat_ENHO:range=chr9:34521463-345216935'pad=0 3'pad=0 strand=- repeatMasking=none,-99.50chr9:34513966-34520982"	NA	inter
LNCA_21_P0005998	0.9058621	A	1.5267482	A	0.65027140982689	0	lncRNA	BC045688	NA	BC045688	NA	Hs.434446	XLOC_007280	NA	NA	THC2616739	NA	"BROAD Institute lincRNA (XLOC_007280), lincRNA [TCONS_00015648]"	chr9:10613420-10616669	hs|9p23	Agilent_HUMAN_G3V2	BC045688	BC045688	chr9	 10613420	 10616669	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47196_PI429285431	6.041848	P	4.5319567	P	2.84788580887352	0	lncRNA	51270-2_{3001..4479}	"gi|268607680|ref|NR_030740.1| Homo sapiens zinc finger protein 667 (ZNF667), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|268607680|ref|NR_030740.1| Homo sapiens zinc finger protein 667 (ZNF667), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_030740.1	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60"	NA	Unknown
CUST_46191_PI429285431	0.9280829	A	0.91828644	A	1.00681349558947	0	lncRNA	50437-1_{1..416}	"gi|390190218|ref|NR_047036.1| Homo sapiens long intergenic non-protein coding RNA 457 (LINC00457), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|390190218|ref|NR_047036.1| Homo sapiens long intergenic non-protein coding RNA 457 (LINC00457), non-coding RNA"	Chr13	 35009587	 35010002	-	100874179	NR_047036.1	NA	NA	NA	NA	NA	inter
CUST_13248_PI429285431	8.315366	P	8.119605	P	1.14532814470986	0	lncRNA	14878-1_{1..586}	lnc-KRT7-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KRT7-1:5	chr12	 52607264	 52607849	+	lnc-KRT7-1	lnc-KRT7-1:5	XLOC_009756	linc-KRT7-1	LOC283403	NA	chr12:52599365-52604639	inter
CUST_51330_PI429285431	1.1109667	A	1.12852	A	0.987906698505517	0	lncRNA	54932-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00009127 range=chr15:59155581-59160321 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009127 range=chr15:59155581-59160321 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 59155581	 59158580	-	NA	NA	NA	NA	FAM63B	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF444:range=chr19:56658281-566715705'pad=0,hg19_refFlat_ZNF444:range=chr19:56658281-566715705'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.50;hg19_refFlat_ZNF187:range=chr6:28239698-282448735'pad=0,hg19_refFlat_ZNF187:range=chr6:28239698-282448735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-58.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_PGBD1:range=chr6:28251591-282700615'pad=0,hg19_refFlat_PGBD1:range=chr6:28251591-282700615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZKSCAN1:range=chr7:99621130-996318205'pad=0,hg19_refFlat_ZKSCAN1:range=chr7:99621130-996318205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF498:range=chr7:99217230-992276435'pad=0,hg19_refFlat_ZNF498:range=chr7:99217230-992276435'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00chr15:59145581-59149754"	NA	inter
CUST_2761_PI429285431	1.1490875	A	1.2507128	A	0.93198245445244	0	lncRNA	2744-1_{1..449}	"transcript_id ""ENST00000422697.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422697.1"" | genecode_v17"	chr7	 10742303	 10742751	+	ENSG00000236414.1	ENST00000422697.1	AC004535.2	AC004535.2-001	NA	NA	NA	inter
CUST_2422_PI429285431	3.8151984	P	3.8391473	P	0.983536910110531	0	lncRNA	2414-1_{1..566}	"transcript_id ""ENST00000523742.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523742.1"" | genecode_v17"	chr5	166332227	166332792	-	ENSG00000254130.1	ENST00000523742.1	CTB-7E3.1	CTB-7E3.1-001	NA	NA	NA	inter
CUST_37316_PI429285431	1.083013	A	0.9195404	A	1.11997971304335	0	lncRNA	38423-1_{1..1202}	n345760|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1309|NULL|-1.3021900|-0.2674617	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345760|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1309|NULL|-1.3021900|-0.2674617	chr19	 20327416	 20328617	-	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20"	NA	inter
CUST_21097_PI429285431	13.130583	P	12.817902	P	1.24201362488103	0	lncRNA	22722-1_{1..492}	lnc-RP11-712L6.5.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-712L6.5.1-1:1	chr11	126164023	126164514	-	lnc-RP11-712L6.5.1-1	lnc-RP11-712L6.5.1-1:1	ENSG00000254905.1	RP11-712L6.7	TIRAP	"hg19_refFlat_TIRAP:range=chr11:126160790-1261630125'pad=0,hg19_refFlat_TIRAP:range=chr11:126160790-1261630125'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20;hg19_refFlat_TIRAP:range=chr11:126160790-1261635825'pad=0,hg19_refFlat_TIRAP:range=chr11:126160790-1261635825'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20chr11:126154023-126164828"	NA	inner
LNCA_21_P0009115	3.5088506	P	3.3781185	P	1.09484914485687	0	lncRNA	BC131758	NA	BC131758	NA	NA	XLOC_011821	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011821), lincRNA [TCONS_00024903]"	chr16:87539880-87539937	hs|16q24.2	Agilent_HUMAN_G3V2	BC131758	BC131758	chr16	 87539880	 87539937	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38372_PI429285431	1.0400499	A	1.1739812	A	0.911344677118631	0	lncRNA	39413-1_{1..3000}	n382184|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001xsm.2||-0.9764730|-0.4064650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382184|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001xsm.2||-0.9764730|-0.4064650	chr14	 76662780	 76665779	+	NA	NA	NA	NA	C14orf118	NA	chr14:76652780-76669134	inner
CUST_34548_PI429285431	0.90130556	A	0.9446189	A	0.970423679844798	0	lncRNA	36009-1_{1..1910}	n341430|BC043519|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3900|NULL|-0.8502680|-0.3478600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341430|BC043519|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3900|NULL|-0.8502680|-0.3478600	chr13	108439708	108441617	-	NA	NA	NA	NA	FAM155A	NA	chr13:108429708-108497799	inner
CUST_44840_PI429285431	0.9028311	A	0.9105792	A	0.994643822078403	0	lncRNA	49368-2_{3001..4374}	"gi|382544786|ref|NR_047514.1| Homo sapiens antisense of IGF2R non-protein coding RNA (AIRN), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|382544786|ref|NR_047514.1| Homo sapiens antisense of IGF2R non-protein coding RNA (AIRN), transcript variant 2, non-coding RNA"	Chr6	160427323	160428696	-	100271873	NR_047514.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0007201	0.88994104	A	0.9012349	A	0.992202254180302	0	lncRNA	ENST00000533358	NA	NA	NA	NA	HSD17B12	hydroxysteroid (17-beta) dehydrogenase 12	ENST00000533358	THC2648169	GO:0004303|GO:0006694|GO:0005783|GO:0005518|GO:0010811|GO:0035338|GO:0031012|GO:0000166|GO:0016020|GO:0030198|GO:0005789|GO:0016491|GO:0019432|GO:0016021|GO:0001968|GO:0008201|GO:0044255	"BROAD Institute lincRNA (XLOC_009116), lincRNA [TCONS_00019283]"	chr11:43662571-43694586	hs|11p11.2	Agilent_HUMAN_G3V2	ENST00000533358	ENST00000533358	chr11	 43662571	 43694586	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20442_PI429285431	10.551693	P	10.720077	P	0.889838854640474	0	lncRNA	22086-1_{1..503}	lnc-AIPL1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AIPL1-2:3	chr17	  6092681	  6093183	-	lnc-AIPL1-2	lnc-AIPL1-2:3	ENSG00000262231.1	RP11-960B9.2	NA	NA	NA	inter
CUST_14607_PI429285431	4.5132236	P	4.410421	P	1.07385752859122	0	lncRNA	16275-1_{1..335}	lnc-BCL6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BCL6-1:1	chr3	187574080	187574414	-	lnc-BCL6-1	lnc-BCL6-1:1	XLOC_003364	linc-BCL6-5	NA	NA	NA	inter
CUST_44449_PI429285431	2.1930766	A	0.8841806	A	2.47751879147318	0	lncRNA	49056-2_{3001..3927}	"gi|359279885|ref|NR_045580.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|359279885|ref|NR_045580.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 9, non-coding RNA"	Chr4	159445866	159446792	+	59350	NR_045580.1	NA	NA	NA	NA	NA	inter
CUST_50628_PI429285431	0.8776052	A	0.8823973	A	0.99668387990799	0	lncRNA	54312-1_{1..584}	hg19_lincRNAsTranscripts_TCONS_l2_00002905 range=chr10:19493962-19498547 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002905 range=chr10:19493962-19498547 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 19493962	 19494545	+	NA	NA	NA	NA	LOC100652979	NA	chr10:19483962-19508547	inter
CUST_9067_PI429285431	0.9112359	A	0.9283575	A	0.988202355677735	0	lncRNA	10590-1_{1..1420}	lnc-TMEM75-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM75-3:2	chr8	128493879	128495298	-	lnc-TMEM75-3	lnc-TMEM75-3:2	ENSG00000246228	RP11-382A18.1	NA	NA	NA	inter
CUST_25344_PI429285431	2.7566557	A	3.0981061	A	0.789247450318553	0	lncRNA	26875-1_{1..2434}	lnc-NCOA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NCOA3-1:1	chr20	 46313086	 46315519	+	lnc-NCOA3-1	lnc-NCOA3-1:1	ENSG00000255438.1	CTD-2653D5.1	SULF2	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SULF2:range=chr20:46287106-463861075'pad=0,hg19_refFlat_SULF2:range=chr20:46287106-463861075'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70chr20:46303086-46325041"	NA	inner
LNCA_21_P0005843	6.911697	P	6.7909336	P	1.08731005887984	0	lncRNA	TCONS_00015022	NA	NA	NA	NA	XLOC_007096	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007096), lincRNA [TCONS_00015022]"	chr8:61822136-61822077	hs|8q12.2	Agilent_HUMAN_G3V2	TCONS_00015022	TCONS_00015022	chr8	 61822077	 61822136	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31325_PI429285431	0.89160055	A	0.9008094	A	0.993637240218998	0	lncRNA	33108-1_{1..437}	n337791|BC040055|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|173|NULL|-1.1338300|-0.3026929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337791|BC040055|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|173|NULL|-1.1338300|-0.3026929	chr15	 59563529	 59563965	-	NA	NA	NA	NA	MYO1E	NA	chr15:59553529-59573953	inner
CUST_19165_PI429285431	0.90306884	A	0.9124806	A	0.993497498451774	0	lncRNA	20834-1_{1..396}	lnc-DIO2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DIO2-4:1	chr14	 79715265	 79715660	-	lnc-DIO2-4	lnc-DIO2-4:1	ENSG00000258662.1	RP11-588P7.2	NRXN3	NA	chr14:79705265-79725366	inner
LNCA_21_P0012561	2.0968132	A	2.2166142	A	0.920314586648864	0	lncRNA	AK091265	NA	AK091265	NA	Hs.552531	XLOC_l2_010491	NA	NA	THC2658511	NA	"BROAD Institute lincRNA (XLOC_l2_010491), lincRNA [TCONS_l2_00020301]"	chr3:193560408-193560349	hs|3q29	Agilent_HUMAN_G3V2	AK091265	AK091265	chr3	193560349	193560408	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3102_PI429285431	0.9130738	A	0.9194175	A	0.995612535399131	0	lncRNA	3082-1_{1..470}	"transcript_id ""ENST00000523810.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523810.1"" | genecode_v17"	chr8	 52908770	 52909239	-	ENSG00000254136.1	ENST00000523810.1	RP11-546K22.2	RP11-546K22.2-001	NA	NA	NA	inter
CUST_31296_PI429285431	3.2008886	A	2.3914208	A	1.75256481460256	0	lncRNA	33081-2_{3001..3915}	n337755|AL832095|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|137|NULL|2.3838800|-0.4339961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337755|AL832095|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|137|NULL|2.3838800|-0.4339961	chrX	 72786344	 72787258	+	NA	NA	NA	NA	CHIC1	NA	chrX:72773344-72906937	inner
CUST_18669_PI429285431	0.8884711	A	0.8863791	A	1.00145111575275	0	lncRNA	20371-1_{1..722}	lnc-GPHN-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPHN-1:4	chr14	 66965071	 66965792	+	lnc-GPHN-1	lnc-GPHN-1:4	ENSG00000196553	NCRNA00238	GPHN	NA	chr14:66974125-66975118	inter
CUST_5371_PI429285431	0.8851787	A	0.8950589	A	0.993174964300793	0	lncRNA	5308-1_{1..556}	"transcript_id ""ENST00000560938.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560938.1"" | genecode_v17"	chr15	101656808	101657363	+	ENSG00000259365.1	ENST00000560938.1	RP11-424I19.1	RP11-424I19.1-001	NA	NA	NA	inter
CUST_5318_PI429285431	7.4712176	P	7.1736603	P	1.2290616641223	0	lncRNA	5257-1_{1..319}	"transcript_id ""ENST00000557777.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557777.1"" | genecode_v17"	chr15	 94417539	 94417857	-	ENSG00000258754.3	ENST00000557777.1	CTD-3049M7.1	CTD-3049M7.1-004	NA	NA	NA	inter
CUST_1002_PI429285431	2.7961478	A	3.0934362	A	0.81378049112149	0	lncRNA	991-1_{1..188}	"transcript_id ""ENST00000423727.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423727.1"" | genecode_v17"	chr2	106575643	106575830	-	ENSG00000234162.1	ENST00000423727.1	AC009505.4	AC009505.4-002	NA	NA	NA	inter
CUST_51300_PI429285431	0.8836444	A	2.054707	A	0.444094127808834	0	lncRNA	54904-1_{1..2250}	hg19_lincRNAsTranscripts_TCONS_l2_00008993 range=chr15:32813669-32817367 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008993 range=chr15:32813669-32817367 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 32813669	 32815918	-	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60"	NA	inter
CUST_45050_PI429285431	0.8809857	A	0.8774748	A	1.00243653397227	0	lncRNA	49543-2_{3001..6000}	"gi|298566295|ref|NR_033767.1| Homo sapiens forkhead box P2 (FOXP2), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|298566295|ref|NR_033767.1| Homo sapiens forkhead box P2 (FOXP2), transcript variant 8, non-coding RNA"	Chr7	114058052	114061051	+	93986	NR_033767.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002497	7.056507	P	7.1120877	P	0.962207066632736	0	lncRNA	TCONS_00004420	NA	NA	NA	NA	XLOC_002293	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002293), lincRNA [TCONS_00004420]"	chr2:120039412-120039353	hs|2q14.2	Agilent_HUMAN_G3V2	TCONS_00004420	TCONS_00004420	chr2	120039353	120039412	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47107_PI429285431	8.680914	P	8.832081	P	0.900521733399701	0	lncRNA	51188-1_{1..1608}	"gi|257195183|ref|NR_028406.1| Homo sapiens FXYD domain containing ion transport regulator 5 (FXYD5), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|257195183|ref|NR_028406.1| Homo sapiens FXYD domain containing ion transport regulator 5 (FXYD5), transcript variant 4, non-coding RNA"	Chr19	 35645672	 35647279	+	53827	NR_028406.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001774	0.8802766	A	1.3008797	A	0.747112238420504	0	lncRNA	BC033397	NA	BC033397	NA	NA	XLOC_001504	NA	NA	THC2508548	NA	"BROAD Institute lincRNA (XLOC_001504), lincRNA [TCONS_00002703]"	chr2:65957967-65958026	hs|2p14	Agilent_HUMAN_G3V2	BC033397	BC033397	chr2	 65957967	 65958026	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7777_PI429285431	2.0767708	A	0.88869977	A	2.27847893087091	0	lncRNA	9402-1_{1..1675}	lnc-DEC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DEC1-1:1	chr9	118352079	118353753	+	lnc-DEC1-1	lnc-DEC1-1:1	ENSG00000197486	AL691420.1	NA	NA	NA	inter
CUST_4249_PI429285431	2.212449	A	1.3235649	A	1.8517432778788	0	lncRNA	4206-1_{1..550}	"transcript_id ""ENST00000552958.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552958.1"" | genecode_v17"	chr12	 48399060	 48399609	-	ENSG00000258203.1	ENST00000552958.1	RP1-228P16.3	RP1-228P16.3-002	COL2A1	NA	chr12:48389060-48398285	inter
CUST_47840_PI429285431	7.089021	P	7.293335	P	0.867951298991133	0	lncRNA	51747-1_{1..1306}	"gi|410171027|ref|XR_133570.2| PREDICTED: Homo sapiens glucosylceramidase-like (LOC100510710), partial misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171027|ref|XR_133570.2| PREDICTED: Homo sapiens glucosylceramidase-like (LOC100510710), partial misc_RNA"	NW_003315906.1	        7	     1312	-	100510710	XR_133570.3	NA	NA	NA	NA	NA	Unknown
CUST_20249_PI429285431	1.3023599	A	0.8939425	A	1.32722907848421	0	lncRNA	21892-1_{1..489}	lnc-FAM76A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM76A-1:1	chr1	 27996418	 27996906	+	lnc-FAM76A-1	lnc-FAM76A-1:1	ENSG00000225886.1	RP11-288L9.4	IFI6	NA	chr1:27992572-27998724	inner
LNCA_21_P0001363	1.3080231	A	2.5431838	A	0.424795179529046	0	lncRNA	TCONS_00001092	NA	NA	NA	NA	XLOC_000340	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000340), lincRNA [TCONS_00001092]"	chr1:110652787-110652846	hs|1p13.3	Agilent_HUMAN_G3V2	TCONS_00001092	TCONS_00001092	chr1	110652787	110652846	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3825_PI429285431	0.87893146	A	0.8810488	A	0.998533448188386	0	lncRNA	3792-2_{3001..3530}	"transcript_id ""ENST00000415305.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000415305.2"" | genecode_v17"	chr10	127374812	127375341	+	ENSG00000228021.2	ENST00000415305.2	RP11-383C5.3	RP11-383C5.3-001	C10orf137	NA	chr10:127408084-127408627	inter
CUST_37597_PI429285431	4.4118342	P	4.6111393	P	0.870969980625593	0	lncRNA	38695-3_{6001..8362}	n346072|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1622|NULL|-1.5443600|-0.1889036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n346072|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1622|NULL|-1.5443600|-0.1889036	chr6	170194940	170197301	-	NA	NA	NA	NA	C6orf70	NA	chr6:170178940-170181617	inter
CUST_35361_PI429285431	3.0529757	A	1.0652508	A	3.96611057388393	0	lncRNA	36771-1_{1..3000}	n342404|D26488|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4896|NULL|9.9238700|-0.3298988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342404|D26488|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4896|NULL|9.9238700|-0.3298988	chr2	 29117535	 29120534	+	NA	NA	NA	NA	WDR43	NA	chr2:29117533-29171080	inner
CUST_21105_PI429285431	0.8926174	A	0.90335894	A	0.992582180670169	0	lncRNA	22730-1_{1..599}	lnc-ABCA5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ABCA5-2:1	chr17	 68124784	 68125382	-	lnc-ABCA5-2	lnc-ABCA5-2:1	ENSG00000230258.1	AC002539.1	KCNJ16	NA	chr17:68114784-68131749	inner
CUST_25429_PI429285431	7.2777967	P	7.2774477	P	1.0002419376282	0	lncRNA	26959-1_{1..415}	lnc-SRGAP3-1:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRGAP3-1:17	chr3	  9438244	  9438658	-	lnc-SRGAP3-1	lnc-SRGAP3-1:17	ENSG00000206573.4	RP11-58B17.1	LOC100652926	NA	chr3:9435634-9438752	inter
LNCA_21_P0009201	2.0751886	A	0.88541436	A	2.2811704350608	0	lncRNA	CR936603	NA	CR936603	NA	Hs.552237	XLOC_012535	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012535), lincRNA [TCONS_00025245]"	chr17:56154954-56154895	hs|17q22	Agilent_HUMAN_G3V2	CR936603	CR936603	chr17	 56154895	 56154954	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20313_PI429285431	1.7134111	A	1.9652054	A	0.839851230711263	0	lncRNA	21956-1_{1..559}	lnc-AC006050.2.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC006050.2.1-3:1	chr17	 28878211	 28878769	-	lnc-AC006050.2.1-3	lnc-AC006050.2.1-3:1	ENSG00000263983.1	RP11-218M11.5	TBC1D29	"hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0,hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30chr17:28868211-28888769"	NA	inter
CUST_30407_PI429285431	1.1365056	A	1.5690179	A	0.740970340129824	0	lncRNA	32187-1_{1..284}	n335536|BC070230|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264188_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264188_07|-1.2011200|-0.3296874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335536|BC070230|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264188_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264188_07|-1.2011200|-0.3296874	chr6	  4713623	  4713906	+	NA	NA	NA	NA	CDYL	NA	chr6:4703623-4727570	inter
LNCA_21_P0008907	2.5992827	A	2.3892012	A	1.15675352879599	0	lncRNA	TCONS_00024338	NA	NA	NA	NA	XLOC_011654	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011654), lincRNA [TCONS_00024338]"	chr16:16550922-16550981	hs|16p13.11	Agilent_HUMAN_G3V2	TCONS_00024338	TCONS_00024338	chr16	 16550922	 16550981	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28552_PI429285431	0.89069813	A	0.89402807	A	0.997694523181032	0	lncRNA	30226-1_{1..418}	n325903|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049930|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049930|-0.9529290|-0.3666693	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325903|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049930|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049930|-0.9529290|-0.3666693	chr10	102987684	102988101	+	NA	NA	NA	NA	LBX1	NA	chr10:102986733-102988717	inter
CUST_39645_PI429285431	1.6859599	A	2.0430717	A	0.780725988796681	0	lncRNA	40583-1_{1..457}	n405221|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000322467||-0.8316900|-0.1369089	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405221|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000322467||-0.8316900|-0.1369089	chr7	    89517	    89973	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009695	4.8985505	P	4.9334784	P	0.97608054007222	0	lncRNA	XR_109584	XR_109584	XR_109584	NA	NA	LOC100128139	uncharacterized LOC100128139	NA	THC2654357	NA	"PREDICTED: Homo sapiens hypothetical LOC100128139 (LOC100128139), miscRNA [XR_109584]"	chr19:22716207-22716266	hs|19p12	Agilent_HUMAN_G3V2	XR_109584	XR_109584	chr19	 22716207	 22716266	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21255_PI429285431	3.8003974	P	3.8671548	P	0.954781554326274	0	lncRNA	22880-1_{1..513}	lnc-SPTBN5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPTBN5-1:2	chr15	 42119835	 42120347	-	lnc-SPTBN5-1	lnc-SPTBN5-1:2	ENSG00000250379.1	RP11-23P13.4	MAPKBP1	NA	chr15:42109835-42120053	inter
CUST_11448_PI429285431	4.913724	P	5.1179056	P	0.868030956868924	0	lncRNA	13015-1_{1..335}	lnc-THPO-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THPO-1:1	chr3	184097379	184097713	-	lnc-THPO-1	lnc-THPO-1:1	XLOC_003354	linc-THPO-2	THPO	NA	chr3:184089773-184095932	inter
CUST_7539_PI429285431	0.9180684	A	0.9664514	A	0.96701957565472	0	lncRNA	9176-1_{1..642}	lnc-TBC1D22A-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TBC1D22A-4:2	chr22	 48030929	 48031570	+	lnc-TBC1D22A-4	lnc-TBC1D22A-4:2	ENSG00000224271	RP11-191L9.4	NA	NA	NA	inter
CUST_11155_PI429285431	5.3972206	P	5.747483	P	0.784441409289567	0	lncRNA	12713-1_{1..588}	lnc-ZNF366-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF366-6:1	chr5	 72250841	 72251428	-	lnc-ZNF366-6	lnc-ZNF366-6:1	XLOC_004878	linc-ZNF366-7	FCHO2	NA	chr5:72251808-72261181	inter
LNCA_21_P0010315	6.605648	P	6.356084	P	1.18884777644003	0	lncRNA	TCONS_00029245	NA	NA	NA	NA	XLOC_013980	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013980), lincRNA [TCONS_00029245]"	chr21:46667014-46667073	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029245	TCONS_00029245	chr21	 46667014	 46667073	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49806_PI429285431	1.0580368	A	0.9111522	A	1.10717601883519	0	lncRNA	53562-1_{1..423}	hg19_lincRNAsTranscripts_TCONS_l2_00027378 range=chr7:63385165-63386124 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027378 range=chr7:63385165-63386124 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 63385165	 63385587	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43366_PI429285431	6.6770988	P	6.772586	P	0.935956120454667	0	lncRNA	48182-1_{1..939}	"gi|379643027|ref|NR_046427.1| Homo sapiens chromosome 1 open reading frame 86 (C1orf86), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379643027|ref|NR_046427.1| Homo sapiens chromosome 1 open reading frame 86 (C1orf86), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NR_046427.1	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20"	NA	Unknown
CUST_26023_PI429285431	1.7268878	A	0.9282404	A	1.73946952068136	0	lncRNA	27542-1_{1..461}	lnc-FMN1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FMN1-3:1	chr15	 32965191	 32965651	-	lnc-FMN1-3	lnc-FMN1-3:1	ENSG00000241818.1	RP11-1000B6.2	SCG5	NA	chr15:32955191-32975266	inner
CUST_27898_PI429285431	7.6299534	P	7.5467367	P	1.05937744651691	0	lncRNA	29493-1_{1..469}	n325136|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331712|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331712|-0.5421000|-0.3566803	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325136|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331712|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331712|-0.5421000|-0.3566803	chr2	136551931	136552399	+	NA	NA	NA	NA	LCT	"hg19_refFlat_LCT:range=chr2:136545894-1365947395'pad=0,hg19_refFlat_LCT:range=chr2:136545894-1365947395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr2:136545415-136562553"	NA	inner
LNCA_21_P0008296	0.9045474	A	0.9278323	A	0.983989686892984	0	lncRNA	TCONS_00022417	NA	NA	NA	NA	XLOC_010750	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010750), lincRNA [TCONS_00022417]"	chr14:20988478-20988537	hs|14q11.2	Agilent_HUMAN_G3V2	TCONS_00022417	TCONS_00022417	chr14	 20988478	 20988537	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37219_PI429285431	1.566386	A	1.6803168	A	0.924066894977745	0	lncRNA	38331-1_{1..618}	n345654|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1203|NULL|-1.4521800|-0.2781139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345654|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1203|NULL|-1.4521800|-0.2781139	chr4	152237732	152238349	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011623	8.163529	P	8.381031	P	0.860053314487364	0	lncRNA	ENST00000506394	NA	NA	NA	NA	XLOC_l2_005826	NA	ENST00000506394	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005826), lincRNA [TCONS_l2_00011572]"	chr17:49025060-49025119	hs|17q21.33	Agilent_HUMAN_G3V2	ENST00000506394	ENST00000506394	chr17	 49025060	 49025119	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38977_PI429285431	3.2655206	P	3.491914	P	0.854769064176531	0	lncRNA	39961-1_{1..380}	n385205|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tvp.2||-1.2284900|-0.2127009	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385205|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tvp.2||-1.2284900|-0.2127009	chr7	 66742734	 66743113	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44230_PI429285431	0.8899129	A	0.90394706	A	0.990319422963536	0	lncRNA	48879-1_{1..798}	"gi|397139041|ref|XR_158770.1| PREDICTED: Homo sapiens uncharacterized LOC100506907, transcript variant 4 (LOC100506907), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139041|ref|XR_158770.1| PREDICTED: Homo sapiens uncharacterized LOC100506907, transcript variant 4 (LOC100506907), misc_RNA"	NA	NA	NA	NA	NA	XR_158770.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012266	5.049845	P	5.26094	P	0.863881299823009	0	lncRNA	TCONS_l2_00017670	NA	NA	NA	NA	XLOC_l2_009332	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009332), lincRNA [TCONS_l2_00017670]"	chr22:25905430-25905489	hs|22q12.1	Agilent_HUMAN_G3V2	TCONS_l2_00017670	TCONS_l2_00017670	chr22	 25905430	 25905489	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21372_PI429285431	4.7925267	P	4.9377284	P	0.904252947120505	0	lncRNA	22994-1_{1..755}	lnc-GGCT-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GGCT-1:2	chr7	 30634327	 30635081	-	lnc-GGCT-1	lnc-GGCT-1:2	ENSG00000196295.5	AC005154.6	GARS	NA	chr7:30634181-30644424	inner
LNCA_21_P0011511	0.905534	A	0.92569816	A	0.986120490376396	0	lncRNA	TCONS_l2_00010547	NA	NA	NA	NA	XLOC_l2_005644	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005644), lincRNA [TCONS_l2_00010547]"	chr17:7049659-7049718	hs|17p13.1	Agilent_HUMAN_G3V2	TCONS_l2_00010547	TCONS_l2_00010547	chr17	  7049659	  7049718	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18951_PI429285431	1.2359767	A	1.9300854	A	0.618091058574309	0	lncRNA	20642-1_{1..414}	lnc-C15orf32-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C15orf32-1:1	chr15	 93143568	 93143981	+	lnc-C15orf32-1	lnc-C15orf32-1:1	ENSG00000258676	RP11-386M24.3	NA	NA	NA	inter
LNCA_21_P0012662	0.90464616	A	0.9236183	A	0.986935604494678	0	lncRNA	TCONS_l2_00021103	NA	NA	NA	NA	XLOC_l2_011098	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011098), lincRNA [TCONS_l2_00021103]"	chr4:36498088-36498029	hs|4p14	Agilent_HUMAN_G3V2	TCONS_l2_00021103	TCONS_l2_00021103	chr4	 36498029	 36498088	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37533_PI429285431	0.8897279	A	0.9013381	A	0.991984717664833	0	lncRNA	38637-1_{1..1088}	n346008|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1558|NULL|-1.2674100|-0.2808474	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346008|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1558|NULL|-1.2674100|-0.2808474	chr12	132568846	132569933	+	NA	NA	NA	NA	EP400	NA	chr12:132558846-132565011	inter
CUST_38326_PI429285431	3.4731588	A	3.6203773	P	0.902989739597883	0	lncRNA	39372-1_{1..875}	n382042|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vef.1||0.1829730|-0.2483745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382042|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vef.1||0.1829730|-0.2483745	chr13	 50656413	 50657287	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004293	0.90247005	A	0.9197396	A	0.988101019610226	0	lncRNA	TCONS_00010086	NA	NA	NA	NA	XLOC_004545	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004545), lincRNA [TCONS_00010086]"	chr5:128729403-128729462	hs|5q23.3	Agilent_HUMAN_G3V2	TCONS_00010086	TCONS_00010086	chr5	128729403	128729462	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38243_PI429285431	1.0083827	A	1.0376861	A	0.979893321268888	0	lncRNA	39304-1_{1..3000}	n381744|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001oxi.1||1.5442700|-0.2401866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381744|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001oxi.1||1.5442700|-0.2401866	chr11	 76092356	 76095355	+	NA	NA	NA	NA	PRKRIR	NA	chr11:76082356-76091880	inter
CUST_22783_PI429285431	2.9065852	P	2.7366993	A	1.12496950947689	0	lncRNA	24363-1_{1..475}	lnc-UPF2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UPF2-2:2	chr10	 11916667	 11917141	-	lnc-UPF2-2	lnc-UPF2-2:2	ENSG00000225778.1	RP11-401F24.4	C10orf47	NA	chr10:11906667-11914276	inter
CUST_37898_PI429285431	11.214094	P	11.200843	P	1.00922720386212	0	lncRNA	38987-1_{1..838}	n346435|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1985|NULL|-1.3175300|-0.1294021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346435|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1985|NULL|-1.3175300|-0.1294021	chr1	148928283	148929120	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50621_PI429285431	0.89818597	A	0.90666664	A	0.994138891209551	0	lncRNA	54305-1_{1..2923}	hg19_lincRNAsTranscripts_TCONS_l2_00003385 range=chr10:6168805-6183674 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003385 range=chr10:6168805-6183674 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	  6168805	  6171727	-	NA	NA	NA	NA	PFKFB3	NA	chr10:6186843-6193674	inter
CUST_53_PI429201921	1.3965392	A	0.9203245	A	1.39108897635911	0	lncRNA	54-1_{1..1596}	TC19002443.hg.1	 TCONS_l2_00013034-XLOC_l2_007013 // Broad TUCP // linc-PEPD-3 chr19:-:35034793-35036389 // chr19 // 100 // 100 // 0 // --- // 0///TCONS_l2_00013033-XLOC_l2_007013 // Broad TUCP // linc-PEPD-3 chr19:-:35034792-35036304 // chr19 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr19:-:35034792-35036304	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00013033-XLOC_l2_007013	linc-PEPD-3	chr19	 35034792	 35036304	-	NA	NA	NA	NA	TNFAIP2	NA	chr14:103592664-103599246	Unknown
CUST_21870_PI429285431	1.1178395	A	1.0973259	A	1.01432051402259	0	lncRNA	23480-1_{1..472}	lnc-PHTF2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHTF2-2:1	chr7	 78569775	 78570246	+	lnc-PHTF2-2	lnc-PHTF2-2:1	ENSG00000251276.1	MAGI2-AS1	MAGI2	NA	chr7:78559775-78580211	inner
CUST_24493_PI429285431	0.8842553	A	1.0398983	A	0.897732170190588	0	lncRNA	26045-1_{1..313}	lnc-OR3A1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-OR3A1-1:3	chr17	  3289419	  3289731	-	lnc-OR3A1-1	lnc-OR3A1-1:3	ENSG00000262670.1	RP11-64J4.2	NA	NA	NA	inter
CUST_43461_PI429285431	1.288072	A	0.91688216	A	1.29341911791016	0	lncRNA	48265-1_{1..1474}	"gi|383276552|ref|NR_002788.2| Homo sapiens cytochrome P450, family 4, subfamily Z, polypeptide 2 pseudogene (CYP4Z2P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|383276552|ref|NR_002788.2| Homo sapiens cytochrome P450, family 4, subfamily Z, polypeptide 2 pseudogene (CYP4Z2P), non-coding RNA"	Chr1	 47308767	 47310240	-	163720	NR_002788.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0002289	0.890643	A	0.902375	A	0.991900972566223	0	lncRNA	TCONS_00003850	NA	NA	NA	NA	XLOC_001656	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001656), lincRNA [TCONS_00003850]"	chr2:126474533-126474592	hs|2q14.3	Agilent_HUMAN_G3V2	TCONS_00003850	TCONS_00003850	chr2	126474533	126474592	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17903_PI429285431	1.0882571	A	0.9197484	A	1.12389612340893	0	lncRNA	19635-1_{1..640}	lnc-TMEM132B-10:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132B-10:2	chr12	127203711	127204350	+	lnc-TMEM132B-10	lnc-TMEM132B-10:2	XLOC_009939	linc-TMEM132C-10	NA	NA	NA	inter
CUST_8569_PI429285431	5.8846273	P	6.199205	P	0.804086325274865	0	lncRNA	10128-1_{1..1866}	lnc-SYT13-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SYT13-2:1	chr11	 45234530	 45236395	-	lnc-SYT13-2	lnc-SYT13-2:1	ENSG00000246343	AC103681.1	PRDM11	NA	chr11:45224530-45246289	inner
CUST_43875_PI429285431	0.881615	A	0.8875743	A	0.995877847498002	0	lncRNA	48594-1_{1..3000}	"gi|397138960|ref|XR_158986.1| PREDICTED: Homo sapiens uncharacterized LOC100996478 (LOC100996478), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397138960|ref|XR_158986.1| PREDICTED: Homo sapiens uncharacterized LOC100996478 (LOC100996478), misc_RNA"	Chr2	 85291233	 85294232	-	100996478	XR_158986.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0004178	0.8837351	A	0.89123434	A	0.994815409561941	0	lncRNA	ENST00000503145	NA	NA	NA	NA	XLOC_004981	NA	ENST00000503145	NA	NA	"BROAD Institute lincRNA (XLOC_004981), lincRNA [TCONS_00009773]"	chr5:123828582-123828523	hs|5q23.2	Agilent_HUMAN_G3V2	ENST00000503145	ENST00000503145	chr5	123828523	123828582	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47349_PI429285431	2.710956	A	2.9895225	A	0.824409765811521	0	lncRNA	51400-1_{1..1296}	"gi|223029445|ref|NR_026755.1| Homo sapiens chromosome 21 open reading frame 15 (C21orf15), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223029445|ref|NR_026755.1| Homo sapiens chromosome 21 open reading frame 15 (C21orf15), non-coding RNA"	Chr21	 15215454	 15216749	-	54094	NR_026755.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014111	0.88185686	A	1.3539572	A	0.720914294117508	0	lncRNA	ENST00000490351	XR_108470	XR_108470	NA	Hs.26479	LOC100506708	NA	ENST00000490351	THC2634917	NA	"PREDICTED: Homo sapiens hypothetical LOC100506708 (LOC100506708), miscRNA [XR_108470]"	chr3:116087088-116088706	hs|3q13.31	Agilent_HUMAN_G3V2	ENST00000490351	ENST00000490351	chr3	116087088	116088706	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23788_PI429285431	1.0181774	A	1.4430771	A	0.74489051653298	0	lncRNA	25353-2_{3001..3261}	lnc-RPL7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RPL7-1:1	chr8	 74271527	 74271787	-	lnc-RPL7-1	lnc-RPL7-1:1	ENSG00000250295.2	RP11-434I12.2	NA	NA	NA	inter
CUST_7795_PI429285431	0.8771385	A	0.88037944	A	0.997756072953494	0	lncRNA	9420-1_{1..3000}	lnc-CD9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD9-1:1	chr12	  6305978	  6308977	+	lnc-CD9-1	lnc-CD9-1:1	ENSG00000250621	XLOC_009631	CD9	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50chr12:6309482-6317505"	NA	inter
CUST_13097_PI429285431	0.91414714	A	0.91887724	A	0.99672671344289	0	lncRNA	14721-1_{1..251}	lnc-TBX19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBX19-1:1	chr1	168288604	168288854	+	lnc-TBX19-1	lnc-TBX19-1:1	XLOC_000454	linc-XCL1	TBX19	NA	chr1:168278604-168283664	inter
CUST_708_PI429285431	0.96368223	A	1.5429816	A	0.669288731666281	0	lncRNA	701-1_{1..943}	"transcript_id ""ENST00000593269.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593269.1"" | genecode_v17"	chr2	  6776193	  6777135	-	ENSG00000236172.2	ENST00000593269.1	AC097517.2	AC097517.2-024	NA	NA	NA	inter
CUST_40158_PI429285431	5.3888345	P	4.4850793	P	1.87092950486289	0	lncRNA	40995-2_{3001..5295}	n407844|NR_027399|lncRNA|Homosapiens||RefGeneNoncode|NR_027399||1.0772800|-0.2286003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n407844|NR_027399|lncRNA|Homosapiens||RefGeneNoncode|NR_027399||1.0772800|-0.2286003	chr16	 67717618	 67719912	-	NA	NA	NA	NA	RANBP10	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.31;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chr16:67757005-67763273"	NA	inner
LNCA_21_P0012671	0.8793923	A	4.0240803	P	0.113071872691509	0	lncRNA	TCONS_l2_00021192	NA	NA	NA	NA	XLOC_l2_011173	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011173), lincRNA [TCONS_l2_00021192]"	chr4:82523959-82523900	hs|4q21.22	Agilent_HUMAN_G3V2	TCONS_l2_00021192	TCONS_l2_00021192	chr4	 82523900	 82523959	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21538_PI429285431	0.9274183	A	0.8998917	A	1.01926317130569	0	lncRNA	23156-1_{1..749}	lnc-COL6A1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COL6A1-3:1	chr21	 47172764	 47173512	+	lnc-COL6A1-3	lnc-COL6A1-3:1	ENSG00000231820.1	AL133492.3	NA	NA	NA	inter
CUST_39634_PI429285431	1.6102164	A	2.2559338	A	0.639174873082664	0	lncRNA	40573-1_{1..559}	n405210|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000041916||-1.1879100|-0.3679537	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405210|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000041916||-1.1879100|-0.3679537	chr6	114657997	114658555	+	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00"	NA	inter
CUST_5788_PI429285431	3.4211712	P	2.9567757	P	1.37973911126604	0	lncRNA	5710-1_{1..398}	"transcript_id ""ENST00000577879.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577879.1"" | genecode_v17"	chr17	 22192161	 22192558	+	ENSG00000265114.1	ENST00000577879.1	RP11-285M22.1	RP11-285M22.1-001	NA	NA	NA	inter
CUST_23324_PI429285431	1.1433923	A	1.2411638	A	0.934475341227528	0	lncRNA	24895-1_{1..545}	lnc-DTL-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DTL-2:2	chr1	212026904	212027448	+	lnc-DTL-2	lnc-DTL-2:2	ENSG00000229258.1	RP11-552D8.1	NA	NA	NA	inter
LNCA_21_P0009851	0.8812318	A	0.8818298	A	0.999585583880117	0	lncRNA	ENST00000444478	NA	NA	NA	NA	XLOC_013558	NA	ENST00000444478	THC2717162	NA	"BROAD Institute lincRNA (XLOC_013558), lincRNA [TCONS_00027945]"	chr20:48785973-48786032	hs|20q13.13	Agilent_HUMAN_G3V2	ENST00000444478	ENST00000444478	chr20	 48785973	 48786032	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005595	0.8817403	A	0.88234407	A	0.99958158608632	0	lncRNA	TCONS_00014249	NA	NA	NA	NA	XLOC_006338	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006338), lincRNA [TCONS_00014249]"	chr7:3133827-3133768	hs|7p22.2	Agilent_HUMAN_G3V2	TCONS_00014249	TCONS_00014249	chr7	  3133768	  3133827	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38224_PI429285431	2.26925	A	1.0541834	A	2.32151499578864	0	lncRNA	39288-1_{1..3000}	n381616|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001mmy.1||-0.0931735|-0.2741765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381616|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001mmy.1||-0.0931735|-0.2741765	chr11	 17353588	 17356587	+	NA	NA	NA	NA	NUCB2	NA	chr11:17343588-17353070	inter
CUST_26579_PI429285431	1.1970236	A	0.8898967	A	1.23724130211267	0	lncRNA	28083-1_{1..420}	lnc-CHMP1A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CHMP1A-2:1	chr16	 89478858	 89479277	-	lnc-CHMP1A-2	lnc-CHMP1A-2:1	ENSG00000261574.1	RP1-168P16.2	ANKRD11	NA	chr16:89468858-89488972	inter
CUST_1391_PI429285431	2.7752707	A	3.3996835	P	0.648683748281991	0	lncRNA	1380-1_{1..712}	"transcript_id ""ENST00000473938.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000473938.1"" | genecode_v17"	chr3	 80814048	 80814759	+	ENSG00000242781.1	ENST00000473938.1	RP11-47P18.2	RP11-47P18.2-001	NA	NA	NA	inter
CUST_21488_PI429285431	6.2581224	P	6.5376315	P	0.823871304931717	0	lncRNA	23106-1_{1..592}	lnc-IL21R-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-IL21R-1:1	chr16	 27655554	 27656145	+	lnc-IL21R-1	lnc-IL21R-1:1	ENSG00000261736.1	AC002551.1	KIAA0556	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr16:27645554-27665984"	NA	inner
CUST_26884_PI429285431	2.610965	A	3.1473227	P	0.689509483601401	0	lncRNA	28401-1_{1..459}	n323959|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054575|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054575|-0.8449700|-0.1552504	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323959|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054575|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054575|-0.8449700|-0.1552504	chr9	131248731	131249189	-	NA	NA	NA	NA	ODF2	NA	chr9:131238731-131263522	inner
CUST_46653_PI429285431	6.684368	P	8.221404	P	0.344592689412384	0	lncRNA	50826-1_{1..3000}	"gi|338827677|ref|NR_040072.1| Homo sapiens NDRG family member 4 (NDRG4), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338827677|ref|NR_040072.1| Homo sapiens NDRG family member 4 (NDRG4), transcript variant 8, non-coding RNA"	Chr16	 58534047	 58537046	+	65009	NR_040072.1	NA	NA	NA	NA	NA	inter
CUST_49544_PI429285431	10.2252245	P	10.925446	P	0.615477703833357	0	lncRNA	53337-1_{1..852}	hg19_lincRNAsTranscripts_TCONS_l2_00024806 range=chr6:69339747-69344887 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024806 range=chr6:69339747-69344887 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 69339747	 69340598	-	NA	NA	NA	NA	BAI3	NA	chr6:69345632-69354887	inter
CUST_49292_PI429285431	4.5643	P	5.049845	P	0.714227208707759	0	lncRNA	53109-1_{1..1244}	hg19_lincRNAsTranscripts_TCONS_l2_00022753 range=chr5:1628690-1634048 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022753 range=chr5:1628690-1634048 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	  1628690	  1629933	-	NA	NA	NA	NA	NA	"hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40"	NA	inter
LNCA_21_P0008424	2.0463588	A	2.2549112	A	0.865405143202013	0	lncRNA	TCONS_00022725	NA	NA	NA	NA	XLOC_011005	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011005), lincRNA [TCONS_00022725]"	chr14:42512910-42512851	hs|14q21.1	Agilent_HUMAN_G3V2	TCONS_00022725	TCONS_00022725	chr14	 42512851	 42512910	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39815_PI429285431	3.1865957	P	2.5401938	A	1.56525954625456	0	lncRNA	40725-1_{1..451}	n406277|NR_003933|lncRNA|Homosapiens||RefGeneNoncode|NR_003933||2.6790000|-0.1132207	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406277|NR_003933|lncRNA|Homosapiens||RefGeneNoncode|NR_003933||2.6790000|-0.1132207	chrX	 50648431	 50648881	+	NA	NA	NA	NA	BMP15	NA	chrX:50653735-50658882	inter
CUST_37695_PI429285431	7.3561597	P	6.6263876	P	1.65837710002044	0	lncRNA	38787-1_{1..256}	n346187|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1737|NULL|-1.4036500|-0.2207935	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346187|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1737|NULL|-1.4036500|-0.2207935	chr1	 39174876	 39175131	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23308_PI429285431	9.45542	P	7.8732815	P	2.99413339924326	0	lncRNA	24879-1_{1..424}	lnc-SMC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMC4-1:1	chr3	159945618	159946041	+	lnc-SMC4-1	lnc-SMC4-1:1	ENSG00000244078.1	RP11-431I8.1	LOC401097	NA	chr3:159943423-159946000	inner
CUST_10233_PI429285431	3.1996455	P	3.4284148	P	0.853362547600202	0	lncRNA	11757-1_{1..656}	lnc-ZCCHC17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZCCHC17-1:1	chr1	 31333893	 31334548	+	lnc-ZCCHC17-1	lnc-ZCCHC17-1:1	XLOC_000122	linc-ZCCHC17-1	SDC3	NA	chr1:31342313-31344455	inter
CUST_2224_PI429285431	0.9106766	A	0.9135335	A	0.998021707225621	0	lncRNA	2216-1_{1..1453}	"transcript_id ""ENST00000507387.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507387.1"" | genecode_v17"	chr5	 84959050	 84960502	+	ENSG00000250874.1	ENST00000507387.1	CTC-480C2.1	CTC-480C2.1-001	NA	NA	NA	inter
CUST_21776_PI429285431	5.144747	P	5.658869	P	0.700218944655831	0	lncRNA	23386-1_{1..452}	lnc-RP11-944C7.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-944C7.1.1-1:1	chr14	 90420930	 90421381	-	lnc-RP11-944C7.1.1-1	lnc-RP11-944C7.1.1-1:1	ENSG00000259053.1	RP11-33N16.3	EFCAB11	NA	chr14:90410930-90421089	inner
CUST_12491_PI429285431	3.7680054	P	3.7523117	P	1.01093742494838	0	lncRNA	14102-1_{1..290}	lnc-PET112-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PET112-2:2	chr4	152831150	152831439	-	lnc-PET112-2	lnc-PET112-2:2	XLOC_004124	linc-PET112L-3	NA	NA	NA	inter
CUST_3561_PI429285431	1.3176382	A	0.9210322	A	1.31640736212727	0	lncRNA	3531-1_{1..450}	"transcript_id ""ENST00000444936.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444936.2"" | genecode_v17"	chr9	137397318	137397767	+	ENSG00000223795.2	ENST00000444936.2	RP11-473E2.2	RP11-473E2.2-001	NA	NA	NA	inter
CUST_26100_PI429285431	1.218245	A	0.8992727	A	1.24744162058432	0	lncRNA	27612-1_{1..630}	lnc-USP13-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP13-2:1	chr3	179639338	179639967	+	lnc-USP13-2	lnc-USP13-2:1	ENSG00000244302.1	PEX5L-AS2	PEX5L	NA	chr3:179629338-179649683	inner
CUST_23209_PI429285431	1.548984	A	2.0221608	A	0.720376587995629	0	lncRNA	24781-1_{1..485}	lnc-SCGB1D4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SCGB1D4-1:1	chr11	 62105383	 62105867	-	lnc-SCGB1D4-1	lnc-SCGB1D4-1:1	ENSG00000255118.1	RP11-703H8.7	ASRGL1	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ASRGL1:range=chr11:62105450-621597565'pad=0,hg19_refFlat_ASRGL1:range=chr11:62105450-621597565'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10chr11:62098420-62115562"	NA	inner
CUST_45007_PI429285431	0.8874105	A	1.6668748	A	0.582583077209961	0	lncRNA	49510-2_{3001..4135}	"gi|392307003|ref|NR_052016.1| Homo sapiens GATA zinc finger domain containing 1 (GATAD1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392307003|ref|NR_052016.1| Homo sapiens GATA zinc finger domain containing 1 (GATAD1), transcript variant 2, non-coding RNA"	Chr7	 92079762	 92080896	+	57798	NR_052016.1	NA	NA	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20"	NA	inter
CUST_1149_PI429285431	1.4390963	A	1.1760646	A	1.19999774935283	0	lncRNA	1138-1_{1..619}	"transcript_id ""ENST00000432251.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432251.1"" | genecode_v17"	chr2	162949939	162950557	+	ENSG00000233397.1	ENST00000432251.1	AC008063.3	AC008063.3-001	NA	NA	NA	inter
CUST_39907_PI429285431	0.914129	A	0.9258417	A	0.991914242048877	0	lncRNA	40790-1_{1..3000}	n406641|NR_024170|lncRNA|Homosapiens||RefGeneNoncode|NR_024170||2.2617500|-0.4031734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406641|NR_024170|lncRNA|Homosapiens||RefGeneNoncode|NR_024170||2.2617500|-0.4031734	chr4	100799494	100802493	-	NA	NA	NA	NA	LAMTOR3	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40chr4:100799495-100815703"	NA	inner
CUST_38160_PI429285431	4.1441536	P	4.6265655	P	0.715779980997883	0	lncRNA	39231-2_{3001..3332}	n381382|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001igj.1||-0.1788080|-0.2087638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381382|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001igj.1||-0.1788080|-0.2087638	chr10	  1226252	  1226583	-	NA	NA	NA	NA	ADARB2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30chr10:1223253-1236584"	NA	inner
CUST_34315_PI429285431	1.6300899	A	1.4971215	A	1.09654757014898	0	lncRNA	35809-1_{1..1595}	n341176|BC034306|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3642|NULL|-0.1530460|-0.2515004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341176|BC034306|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3642|NULL|-0.1530460|-0.2515004	chr7	  4936898	  4938492	-	NA	NA	NA	NA	MMD2	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-43.61;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DNMT1:range=chr19:10244343-103055755'pad=0,hg19_refFlat_DNMT1:range=chr19:10244343-103055755'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr7:4945620-4948466"	NA	inter
LNCA_21_P0012543	1.6114616	A	2.3529847	A	0.598107577285122	0	lncRNA	TCONS_l2_00020137	NA	NA	NA	NA	XLOC_l2_010239	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010239), lincRNA [TCONS_l2_00020137]"	chr3:72149068-72141580	hs|3p13	Agilent_HUMAN_G3V2	TCONS_l2_00020137	TCONS_l2_00020137	chr3	 72141580	 72149068	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7873_PI429285431	6.10203	P	5.3947425	P	1.63273143030049	0	lncRNA	9494-1_{1..2410}	lnc-TMEM105-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM105-1:1	chr17	 79329565	 79331974	-	lnc-TMEM105-1	lnc-TMEM105-1:1	ENSG00000250297	ENST00000505044	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RNF213:range=chr17:78237481-783672985'pad=0,hg19_refFlat_RNF213:range=chr17:78237481-783672985'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.81;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-24.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00"	NA	inter
CUST_11134_PI429285431	3.7238948	P	4.50659	P	0.581279848513478	0	lncRNA	12692-1_{1..3000}	lnc-GRIP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRIP1-1:2	chr12	 67301276	 67304275	-	lnc-GRIP1-1	lnc-GRIP1-1:2	XLOC_010109	linc-GRIP1-1	NA	"hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90"	NA	inter
CUST_30913_PI429285431	7.0981445	P	6.9665833	P	1.09547852271141	0	lncRNA	32701-1_{1..515}	n336960|BC104427|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000337721|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000337721|3.8809500|-0.1994349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336960|BC104427|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000337721|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000337721|3.8809500|-0.1994349	chr15	 43819793	 43820307	+	NA	NA	NA	NA	PPIP5K1	NA	chr15:43825660-43830308	inter
CUST_10903_PI429285431	1.0812675	A	1.3243493	A	0.844938475516459	0	lncRNA	12447-1_{1..1629}	lnc-OXCT1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OXCT1-1:4	chr5	 42175255	 42176883	-	lnc-OXCT1-1	lnc-OXCT1-1:4	XLOC_004800	linc-OXCT1-1	NA	NA	NA	inter
CUST_39603_PI429285431	9.943958	P	9.628735	P	1.2442039573074	0	lncRNA	40546-1_{1..1733}	n387632|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kec.1||2.4996100|-0.2508158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n387632|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kec.1||2.4996100|-0.2508158	chr7	 66018552	 66020284	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010971	0.9052441	A	0.925006	A	0.986395484137475	0	lncRNA	TCONS_l2_00004485	NA	NA	NA	NA	XLOC_l2_002290	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002290), lincRNA [TCONS_l2_00004485]"	chr11:39266803-39266862	hs|11p12	Agilent_HUMAN_G3V2	TCONS_l2_00004485	TCONS_l2_00004485	chr11	 39266803	 39266862	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004684	7.475159	P	7.8298545	P	0.782034684545009	0	lncRNA	ENST00000454262	NA	NA	NA	NA	XLOC_005462	NA	ENST00000454262	NA	NA	"BROAD Institute lincRNA (XLOC_005462), lincRNA [TCONS_00011369]"	chr6:131018682-131018741	hs|6q23.1	Agilent_HUMAN_G3V2	ENST00000454262	ENST00000454262	chr6	131018682	131018741	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52188_PI429285431	4.318213	P	3.9313781	P	1.30752170902144	0	lncRNA	55706-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017666 range=chr22:25844098-25868137 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017666 range=chr22:25844098-25868137 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 25844098	 25847097	+	NA	NA	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00"	NA	inter
CUST_41974_PI429285431	5.726261	P	5.7056746	P	1.01437169905785	0	lncRNA	43789-1_{1..102}	ENST00000385226 ncrna:miRNA chromosome:GRCh37:14:101526910:101527011:1 gene:ENSG00000207961 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385226 ncrna:miRNA chromosome:GRCh37:14:101526910:101527011:1 gene:ENSG00000207961 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101526910	101527011	+	ENSG00000207961	ENST00000385226	NA	NA	NA	NA	NA	inter
LNCA_19_P00318310	1.6378952	A	2.1839254	A	0.684902152745239	0	lncRNA	TCONS_00012453	NA	NA	NA	NA	XLOC_005238	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005238), lincRNA [TCONS_00012453]"	chr6:30259614-30259673	hs|6p22.1	Agilent_HUMAN_G3V2	TCONS_00012453	TCONS_00012453	chr6	 30259614	 30259673	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18485_PI429285431	6.6289988	P	6.9470096	P	0.802175161255135	0	lncRNA	20203-3_{6001..6482}	lnc-ABCB9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ABCB9-1:1	chr12	123468447	123468928	-	lnc-ABCB9-1	lnc-ABCB9-1:1	ENSG00000256028	RP11-197N18.4	PITPNM2	"hg19_refFlat_ARL6IP4:range=chr12:123464935-1234671335'pad=0,hg19_refFlat_ARL6IP4:range=chr12:123464935-1234671335'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.30;hg19_refFlat_ARL6IP4:range=chr12:123464935-1234672235'pad=0,hg19_refFlat_ARL6IP4:range=chr12:123464935-1234672235'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.30;hg19_refFlat_OGFOD2:range=chr12:123460940-1234638935'pad=0,hg19_refFlat_OGFOD2:range=chr12:123460940-1234638935'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.80chr12:123468027-123476196"	NA	inner
CUST_46710_PI429285431	1.3399594	A	1.3407547	A	0.999448891963152	0	lncRNA	50869-1_{1..3000}	"gi|392306977|ref|NR_024120.2| Homo sapiens diazepam binding inhibitor-like 5, pseudogene (DBIL5P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|392306977|ref|NR_024120.2| Homo sapiens diazepam binding inhibitor-like 5, pseudogene (DBIL5P), non-coding RNA"	Chr17	   655573	   658572	+	100131454	NR_024120.2	NA	NA	NA	NA	NA	inter
CUST_7275_PI429285431	11.586987	P	11.513703	P	1.05210887044826	0	lncRNA	8130-1_{1..220}	"transcript_id ""ENST00000517236.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517236.1"" | genecode_v17"	chr10	 75534080	 75534299	-	ENSG00000253045.1	ENST00000517236.1	RMRPP1	RMRPP1-201	SEC24C	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50chr10:75524080-75531933"	NA	inner
LNCA_21_P0008394	2.1061566	A	1.820018	A	1.21937223378283	0	lncRNA	ENST00000553318	NA	NA	NA	NA	XLOC_010938	NA	ENST00000553318	NA	NA	"BROAD Institute lincRNA (XLOC_010938), lincRNA [TCONS_00022637]"	chr14:101915141-101915200	hs|14q32.31	Agilent_HUMAN_G3V2	ENST00000553318	ENST00000553318	chr14	101915141	101915200	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22143_PI429285431	5.0342236	P	5.92814	P	0.538151245794762	0	lncRNA	23744-1_{1..530}	lnc-ZSCAN10-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZSCAN10-3:6	chr16	  3182020	  3182549	-	lnc-ZSCAN10-3	lnc-ZSCAN10-3:6	ENSG00000263072.1	RP11-473M20.14	ZNF213	"hg19_refFlat_ZNF205:range=chr16:3163432-31703265'pad=0,hg19_refFlat_ZNF205:range=chr16:3163432-31703265'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20chr16:3185057-3192054"	NA	inter
CUST_22898_PI429285431	7.528723	P	7.7702737	P	0.845835665834397	0	lncRNA	24475-1_{1..464}	lnc-ILK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ILK-1:1	chr11	  6640598	  6641061	+	lnc-ILK-1	lnc-ILK-1:1	ENSG00000255680.1	RP11-732A19.9	TPP1	"hg19_refFlat_TPP1:range=chr11:6635777-66406315'pad=0,hg19_refFlat_TPP1:range=chr11:6635777-66406315'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10chr11:6633997-6640692"	NA	inner
LNCA_21_P0002584	8.827684	P	8.78757	P	1.02819507016473	0	lncRNA	THC2741794	NA	NA	NA	NA	XLOC_001414	NA	NA	THC2741794	NA	"BROAD Institute lincRNA (XLOC_001414), lincRNA [TCONS_00004741]"	chr2:031058130-031058189	hs|2p23.1	Agilent_HUMAN_G3V2	THC2741794	THC2741794	chr2	 31058130	 31058189	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38626_PI429285431	5.1512046	P	4.901398	P	1.18904770692657	0	lncRNA	39630-1_{1..2348}	n383805|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vga.1||-0.9840220|-0.3625708	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383805|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vga.1||-0.9840220|-0.3625708	chr2	217079049	217081396	+	NA	NA	NA	NA	XRCC5	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70chr2:217069049-217071016"	NA	inter
CUST_29405_PI429285431	2.6108103	A	2.0434477	A	1.48181218273508	0	lncRNA	31159-1_{1..224}	n332767|AF027144|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062870|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062870|0.5454380|-0.0360234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332767|AF027144|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062870|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062870|0.5454380|-0.0360234	chr19	 53571483	 53571706	-	NA	NA	NA	NA	ZNF160	NA	chr19:53569867-53581707	inner
CUST_8226_PI429285431	0.9013499	A	1.0246191	A	0.918104832342647	0	lncRNA	9817-1_{1..451}	lnc-NRG2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NRG2-1:3	chr5	139488058	139488508	-	lnc-NRG2-1	lnc-NRG2-1:3	ENSG00000245146	CTB-131B5.4	PURA	NA	chr5:139493708-139498150	inter
CUST_37661_PI429285431	2.1384397	A	2.3919864	A	0.838831706995242	0	lncRNA	38754-1_{1..2160}	n346143|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1693|NULL|-1.5599100|-0.2570525	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346143|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1693|NULL|-1.5599100|-0.2570525	chr5	  1599052	  1601211	-	NA	NA	NA	NA	NA	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-54.70"	NA	inter
LNCA_21_P0010387	0.88565516	A	0.8945959	A	0.993821914615654	0	lncRNA	ENST00000457518	NA	NA	NA	NA	XLOC_014407	NA	ENST00000457518	NA	NA	"BROAD Institute lincRNA (XLOC_014407), lincRNA [TCONS_00029492]"	chr22:48440586-48440527	hs|22q13.32	Agilent_HUMAN_G3V2	ENST00000457518	ENST00000457518	chr22	 48440527	 48440586	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51254_PI429285431	2.8056371	A	2.6709192	P	1.0978781172018	0	lncRNA	54863-1_{1..344}	hg19_lincRNAsTranscripts_TCONS_l2_00008480 range=chr15:28901345-28903908 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008480 range=chr15:28901345-28903908 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28901345	 28901688	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30343_PI429285431	5.511154	P	5.0376015	P	1.38852437180099	0	lncRNA	32119-1_{1..218}	n335269|AY665470|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255976|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255976|-1.4076000|-0.3200053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335269|AY665470|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255976|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255976|-1.4076000|-0.3200053	chr12	 26112053	 26112270	+	NA	NA	NA	NA	RASSF8	NA	chr12:26126688-26218309	inner
LNCA_21_P0009677	3.680264	P	3.8123615	P	0.912503817763331	0	lncRNA	TCONS_00026870	NA	NA	NA	NA	XLOC_012922	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012922), lincRNA [TCONS_00026870]"	chr19:4585778-4585837	hs|19p13.3	Agilent_HUMAN_G3V2	TCONS_00026870	TCONS_00026870	chr19	  4585778	  4585837	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41853_PI429285431	6.053335	P	6.2634287	P	0.864481083261526	0	lncRNA	43504-1_{1..83}	ENST00000362106 ncrna:miRNA chromosome:GRCh37:1:1104385:1104467:1 gene:ENSG00000198976 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362106 ncrna:miRNA chromosome:GRCh37:1:1104385:1104467:1 gene:ENSG00000198976 gene_biotype:miRNA transcript_biotype:miRNA	chr1	  1104385	  1104467	+	ENSG00000198976	ENST00000362106	NA	NA	TTLL10	NA	chr1:1109286-1114467	inter
CUST_4274_PI429285431	1.701643	A	0.89358336	A	1.75085503701036	0	lncRNA	4230-1_{1..578}	"transcript_id ""ENST00000602802.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602802.1"" | genecode_v17"	chr12	 58197621	 58198198	+	ENSG00000270039.1	ENST00000602802.1	RP11-571M6.17	RP11-571M6.17-001	AVIL	NA	chr12:58191159-58208198	inner
CUST_24439_PI429285431	3.3874826	P	3.7028296	P	0.803657670087431	0	lncRNA	25992-1_{1..759}	lnc-RPS18-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RPS18-2:1	chr6	 33222475	 33223233	+	lnc-RPS18-2	lnc-RPS18-2:1	ENSG00000232940.1	HCG25	VPS52	"hg19_refFlat_VPS52:range=chr6_mcf_hap5:4692408-47132225'pad=0,hg19_refFlat_VPS52:range=chr6_mcf_hap5:4692408-47132225'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_VPS52:range=chr6_qbl_hap6:4450837-44716885'pad=0,hg19_refFlat_VPS52:range=chr6_qbl_hap6:4450837-44716885'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_VPS52:range=chr6_ssto_hap7:4698843-47196545'pad=0,hg19_refFlat_VPS52:range=chr6_ssto_hap7:4698843-47196545'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_VPS52:range=chr6_dbb_hap3:4499938-45207745'pad=0,hg19_refFlat_VPS52:range=chr6_dbb_hap3:4499938-45207745'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_VPS52:range=chr6:33218618-332394525'pad=0,hg19_refFlat_VPS52:range=chr6:33218618-332394525'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_VPS52:range=chr6_cox_hap2:4662444-46832625'pad=0,hg19_refFlat_VPS52:range=chr6_cox_hap2:4662444-46832625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_VPS52:range=chr6_mann_hap4:4675922-46770555'pad=0,hg19_refFlat_VPS52:range=chr6_mann_hap4:4675922-46770555'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70chr6:33218049-33232721"	NA	inner
LNCA_21_P0007169	0.87979066	A	0.88357997	A	0.997376896820474	0	lncRNA	TCONS_00019195	NA	NA	NA	NA	XLOC_009021	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009021), lincRNA [TCONS_00019195]"	chr11:1056790-1056849	hs|11p15.5	Agilent_HUMAN_G3V2	TCONS_00019195	TCONS_00019195	chr11	  1056790	  1056849	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30340_PI429285431	7.9875946	P	8.721679	P	0.601199452277157	0	lncRNA	32116-1_{1..273}	n335265|AY615271|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255747|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255747|0.2577560|-0.1670394	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335265|AY615271|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255747|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255747|0.2577560|-0.1670394	chr19	  2476354	  2476626	+	NA	NA	NA	NA	GADD45B	NA	chr19:2476123-2478257	inner
CUST_8800_PI429285431	4.894818	P	6.4193335	P	0.347596268550006	0	lncRNA	10341-1_{1..2102}	lnc-KIAA1755-5:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-KIAA1755-5:7	chr20	 37063840	 37065941	-	lnc-KIAA1755-5	lnc-KIAA1755-5:7	ENSG00000196756	RP4-564F22.2	NA	NA	NA	inter
CUST_33768_PI429285431	9.9545765	P	10.02518	P	0.952239579262227	0	lncRNA	35321-1_{1..601}	n340549|AF087978|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3011|NULL|-1.1324700|-0.3278552	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340549|AF087978|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3011|NULL|-1.1324700|-0.3278552	chr5	 92929722	 92930322	+	NA	NA	NA	NA	NR2F1	NA	chr5:92919722-92929788	inter
CUST_52103_PI429285431	9.416257	P	9.053991	P	1.28544332199767	0	lncRNA	55628-1_{1..760}	hg19_lincRNAsTranscripts_TCONS_l2_00017568 range=chr22:17525527-17541777 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017568 range=chr22:17525527-17541777 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17525527	 17526286	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31436_PI429285431	5.1992035	P	4.838886	P	1.283708377611	0	lncRNA	33205-3_{6001..6904}	n337904|BX538221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|287|NULL|-0.8754770|-0.2419007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337904|BX538221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|287|NULL|-0.8754770|-0.2419007	chr15	 67158640	 67159543	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16619_PI429285431	0.91489375	A	1.29594	A	0.767880517698979	0	lncRNA	18319-1_{1..261}	lnc-PREX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PREX1-1:1	chr20	 47470468	 47470728	-	lnc-PREX1-1	lnc-PREX1-1:1	XLOC_013780	linc-PREX1-3	NA	NA	NA	inter
CUST_8817_PI429285431	16.332724	P	16.533285	P	0.870212110670963	0	lncRNA	10356-1_{1..720}	lnc-RALGAPB-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RALGAPB-1:7	chr20	 37079423	 37080142	+	lnc-RALGAPB-1	lnc-RALGAPB-1:7	ENSG00000174365	SNHG11	NA	NA	NA	inter
CUST_34024_PI429285431	0.8852972	A	0.87996113	A	1.00370553044053	0	lncRNA	35557-1_{1..256}	n340841|AY309093|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3305|NULL|-0.9745930|-0.3142194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340841|AY309093|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3305|NULL|-0.9745930|-0.3142194	chr6	 10047194	 10047449	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13229_PI429285431	6.1077023	P	6.7028694	P	0.661967778409563	0	lncRNA	14856-1_{1..318}	lnc-LRIG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRIG1-1:1	chr3	 66874774	 66875091	-	lnc-LRIG1-1	lnc-LRIG1-1:1	XLOC_003152	linc-LRIG1-2	NA	NA	NA	inter
CUST_44078_PI429285431	1.5464723	A	1.2831259	A	1.20025953751449	0	lncRNA	48746-1_{1..2652}	"gi|375331916|ref|NR_046333.1| Homo sapiens cholinergic receptor, nicotinic, delta (muscle) (CHRND), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375331916|ref|NR_046333.1| Homo sapiens cholinergic receptor, nicotinic, delta (muscle) (CHRND), transcript variant 3, non-coding RNA"	Chr2	233390870	233393521	+	1144	NR_046333.1	NA	NA	NA	NA	NA	inter
CUST_7270_PI429285431	0.8914534	A	0.9011194	A	0.99332243404661	0	lncRNA	8099-1_{1..208}	"transcript_id ""ENST00000516001.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516001.1"" | genecode_v17"	chr10	 28072775	 28072982	-	ENSG00000251810.1	ENST00000516001.1	RN7SKP132	RN7SKP132-201	NA	NA	NA	inter
CUST_22610_PI429285431	3.011704	A	4.178877	P	0.44529305002504	0	lncRNA	24195-1_{1..642}	lnc-PXMP4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PXMP4-2:1	chr20	 32398846	 32399487	-	lnc-PXMP4-2	lnc-PXMP4-2:1	ENSG00000230753.1	RP4-553F4.6	CHMP4B	NA	chr20:32399110-32408903	inter
CUST_28529_PI429285431	1.2194797	A	1.2754347	A	0.961957459211357	0	lncRNA	30200-1_{1..404}	n325877|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050589|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050589|-0.7344920|-0.3402541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325877|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050589|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050589|-0.7344920|-0.3402541	chr10	119991146	119991549	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39170_PI429285431	2.5544038	A	3.2216632	P	0.629701757920402	0	lncRNA	40147-1_{1..1151}	n385873|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004frs.2||4.3784400|-0.1393806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385873|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004frs.2||4.3784400|-0.1393806	chrY	  9215703	  9216853	+	NA	NA	NA	NA	FAM197Y6	NA	chrY:9215685-9228479	inner
CUST_2774_PI429285431	1.1876861	A	0.8881587	A	1.23074117943624	0	lncRNA	2757-1_{1..273}	"transcript_id ""ENST00000448898.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448898.1"" | genecode_v17"	chr7	 17719173	 17719445	+	ENSG00000228675.1	ENST00000448898.1	AC006482.1	AC006482.1-001	NA	NA	NA	inter
CUST_26108_PI429285431	1.1635896	A	0.8778638	A	1.21902338330669	0	lncRNA	27619-2_{3001..3273}	lnc-SAP30-5:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:6	chr4	174463220	174463492	+	lnc-SAP30-5	lnc-SAP30-5:6	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174450220-174451378	inter
CUST_9886_PI429285431	3.7643461	P	3.7635288	P	1.00056666968731	0	lncRNA	11410-1_{1..513}	lnc-TP53-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TP53-1:1	chr17	  7608132	  7608644	-	lnc-TP53-1	lnc-TP53-1:1	XLOC_012379	linc-TP53	WRAP53	NA	chr17:7598132-7606820	inter
LNCA_21_P0006470	1.8744035	A	2.636131	A	0.589789686623829	0	lncRNA	ENST00000437309	NA	NA	NA	NA	XLOC_008259	NA	ENST00000437309	NA	NA	"BROAD Institute lincRNA (XLOC_008259), lincRNA [TCONS_00017102]"	chrX:151889260-151889201	hs|Xq28	Agilent_HUMAN_G3V2	ENST00000437309	ENST00000437309	chrX	151889201	151889260	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011676	0.8837553	A	0.88492393	A	0.999190295398214	0	lncRNA	TCONS_l2_00012336	NA	NA	NA	NA	XLOC_l2_006621	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006621), lincRNA [TCONS_l2_00012336]"	chr19:15684632-15684691	hs|19p13.12	Agilent_HUMAN_G3V2	TCONS_l2_00012336	TCONS_l2_00012336	chr19	 15684632	 15684691	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33499_PI429285431	0.9012189	A	0.91005117	A	0.993896638595863	0	lncRNA	35071-1_{1..999}	n340238|BC069556|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2699|NULL|2.3270100|-0.1637893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340238|BC069556|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2699|NULL|2.3270100|-0.1637893	chr4	141481050	141482048	-	NA	NA	NA	NA	ELMOD2	NA	chr4:141471050-141474924	inner
LNCA_21_P0001723	4.216505	P	5.037677	P	0.56598196991807	0	lncRNA	ENST00000450820	NA	NA	NA	NA	XLOC_000746	NA	ENST00000450820	NA	NA	"BROAD Institute lincRNA (XLOC_000746), lincRNA [TCONS_00002308]"	chr1:25580200-25580141	hs|1p36.11	Agilent_HUMAN_G3V2	ENST00000450820	ENST00000450820	chr1	 25580141	 25580200	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49092_PI429285431	4.3691626	P	4.6539454	P	0.820865182048153	0	lncRNA	52916-1_{1..273}	hg19_lincRNAsTranscripts_TCONS_l2_00020406 range=chr4:9699870-9700981 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020406 range=chr4:9699870-9700981 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	  9699870	  9700142	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011657	0.8842814	A	0.8863037	A	0.998599230451557	0	lncRNA	TCONS_l2_00011988	NA	NA	NA	NA	XLOC_l2_006417	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006417), lincRNA [TCONS_l2_00011988]"	chr18:14221352-14221293	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_l2_00011988	TCONS_l2_00011988	chr18	 14221293	 14221352	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1238_PI429285431	0.89049035	A	0.8876884	A	1.00194405096414	0	lncRNA	1230-1_{1..228}	"transcript_id ""ENST00000457625.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457625.2"" | genecode_v17"	chr2	216444130	216444357	-	ENSG00000227981.2	ENST00000457625.2	AC012668.3	AC012668.3-001	NA	NA	NA	inter
CUST_7676_PI429285431	2.5959196	A	1.4092108	A	2.27632854747235	0	lncRNA	9309-1_{1..1950}	lnc-SLC25A2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A2-2:1	chr5	140605196	140607145	-	lnc-SLC25A2-2	lnc-SLC25A2-2:1	ENSG00000250004	ENST00000515856	PCDHB1	"hg19_refFlat_PCDHB6:range=chr5:140529839-1405322235'pad=0,hg19_refFlat_PCDHB6:range=chr5:140529839-1405322235'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_PCDHB13:range=chr5:140593696-1405960925'pad=0,hg19_refFlat_PCDHB13:range=chr5:140593696-1405960925'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.40;hg19_refFlat_PCDHB3:range=chr5:140480234-1404826245'pad=0,hg19_refFlat_PCDHB3:range=chr5:140480234-1404826245'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.50;hg19_refFlat_PCDHB4:range=chr5:140501581-1405039685'pad=0,hg19_refFlat_PCDHB4:range=chr5:140501581-1405039685'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.50;hg19_refFlat_PCDHB9:range=chr5:140566893-1405692855'pad=0,hg19_refFlat_PCDHB9:range=chr5:140566893-1405692855'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.50;hg19_refFlat_PCDHB16:range=chr5:140562135-1405644655'pad=0,hg19_refFlat_PCDHB16:range=chr5:140562135-1405644655'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80;hg19_refFlat_PCDHB12:range=chr5:140588480-1405908675'pad=0,hg19_refFlat_PCDHB12:range=chr5:140588480-1405908675'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20;hg19_refFlat_PCDHB2:range=chr5:140474375-1404767715'pad=0,hg19_refFlat_PCDHB2:range=chr5:140474375-1404767715'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.50;hg19_refFlat_PCDHB8:range=chr5:140557616-1405600215'pad=0,hg19_refFlat_PCDHB8:range=chr5:140557616-1405600215'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.30;hg19_refFlat_PCDHB15:range=chr5:140625147-1406275105'pad=0,hg19_refFlat_PCDHB15:range=chr5:140625147-1406275105'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.40;hg19_refFlat_PCDHB14:range=chr5:140603078-1406054745'pad=0,hg19_refFlat_PCDHB14:range=chr5:140603078-1406054745'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.50;hg19_refFlat_PCDHB7:range=chr5:140552417-1405547985'pad=0,hg19_refFlat_PCDHB7:range=chr5:140552417-1405547985'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20;hg19_refFlat_PCDHB11:range=chr5:140579348-1405817415'pad=0,hg19_refFlat_PCDHB11:range=chr5:140579348-1405817415'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.80chr5:140595196-140615611"	NA	inner
LNCA_21_P0011285	1.4865361	A	1.4531341	A	1.02342260176861	0	lncRNA	TCONS_l2_00008395	NA	NA	NA	NA	XLOC_l2_004553	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004553), lincRNA [TCONS_l2_00008395]"	chr15:20495176-20495403	hs|15q11.1	Agilent_HUMAN_G3V2	TCONS_l2_00008395	TCONS_l2_00008395	chr15	 20495176	 20495403	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15899_PI429285431	0.88445574	A	0.8934101	A	0.993812532320574	0	lncRNA	17591-1_{1..1275}	lnc-CPT2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CPT2-7:1	chr1	 53801842	 53803116	+	lnc-CPT2-7	lnc-CPT2-7:1	XLOC_000197	linc-DMRTB1-2	LRP8	NA	chr1:53791842-53793821	inter
CUST_41939_PI429285431	6.2687044	P	6.5687714	P	0.812214675531421	0	lncRNA	43695-1_{1..73}	ENST00000582238 ncrna:miRNA chromosome:GRCh37:14:74225450:74225522:1 gene:ENSG00000264741 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582238 ncrna:miRNA chromosome:GRCh37:14:74225450:74225522:1 gene:ENSG00000264741 gene_biotype:miRNA transcript_biotype:miRNA	chr14	 74225450	 74225522	+	ENSG00000264741	ENST00000582238	NA	NA	C14orf43	NA	chr14:74215450-74235522	inner
CUST_29651_PI429285431	1.370929	A	0.920821	A	1.36614252221301	0	lncRNA	31413-1_{1..228}	n333260|AF540977|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000081465_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000081465_04|1.2414400|-0.1440541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333260|AF540977|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000081465_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000081465_04|1.2414400|-0.1440541	chr8	  7679536	  7679763	-	NA	NA	NA	NA	DEFB106A	NA	chr8:7682694-7686575	inner
CUST_19574_PI429285431	6.5199194	P	6.701965	P	0.88145229695331	0	lncRNA	21230-1_{1..1017}	lnc-C9orf103-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C9orf103-1:2	chr9	 86327413	 86328429	+	lnc-C9orf103-1	lnc-C9orf103-1:2	ENSG00000254473.1	RP11-522I20.3	UBQLN1	NA	chr9:86317413-86323168	inter
CUST_8034_PI429285431	0.8909407	A	0.90482205	A	0.990424322974611	0	lncRNA	9642-1_{1..2317}	lnc-TDP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TDP2-1:1	chr6	 24669773	 24672089	-	lnc-TDP2-1	lnc-TDP2-1:1	ENSG00000249810	ENST00000503700	ACOT13	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-26.14;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60chr6:24667263-24680175"	NA	inner
CUST_23947_PI429285431	3.921744	P	4.380316	P	0.727706196206579	0	lncRNA	25504-1_{1..3000}	lnc-RHOBTB2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RHOBTB2-2:2	chr8	 22745189	 22748188	+	lnc-RHOBTB2-2	lnc-RHOBTB2-2:2	ENSG00000248738.2	RP11-87E22.2	PEBP4	NA	chr8:22735189-22755535	inner
LNCA_21_P0009428	4.6972647	P	4.7558126	P	0.960230122976395	0	lncRNA	XR_110155	XR_110155	XR_110155	NA	Hs.146758	LOC100505853	uncharacterized LOC100505853	NA	THC2623402	NA	"PREDICTED: Homo sapiens hypothetical LOC100505853 (LOC100505853), miscRNA [XR_110155]"	chr18:73408293-73408234	hs|18q23	Agilent_HUMAN_G3V2	XR_110155	XR_110155	chr18	 73408234	 73408293	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24910_PI429285431	1.0766679	A	0.89418113	A	1.13483831848806	0	lncRNA	26451-1_{1..346}	lnc-SKOR1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SKOR1-1:2	chr15	 68166035	 68166380	+	lnc-SKOR1-1	lnc-SKOR1-1:2	ENSG00000259410.1	RP11-34F13.3	NA	NA	NA	inter
CUST_43259_PI429285431	3.840491	P	5.790697	P	0.258779277664057	0	lncRNA	48077-1_{1..672}	ENST00000602975 havana:sense_intronic chromosome:GRCh37:15:77359996:77360667:-1 gene:ENSG00000269951 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602975 havana:sense_intronic chromosome:GRCh37:15:77359996:77360667:-1 gene:ENSG00000269951 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr15	 77359996	 77360667	-	ENSG00000269951	ENST00000602975	NA	NA	TSPAN3	NA	chr15:77349996-77363570	inner
CUST_9276_PI429285431	4.0576587	P	3.9454992	P	1.08084489037594	0	lncRNA	10781-1_{1..419}	lnc-UXS1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UXS1-2:1	chr2	106545171	106545589	-	lnc-UXS1-2	lnc-UXS1-2:1	XLOC_002247	linc-FHL2-2	NA	NA	NA	inter
CUST_1745_PI429285431	2.5682023	A	1.7206539	A	1.79944050107607	0	lncRNA	1731-1_{1..757}	"transcript_id ""ENST00000507056.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507056.1"" | genecode_v17"	chr4	 38511388	 38512144	+	ENSG00000249667.1	ENST00000507056.1	RP11-213G21.1	RP11-213G21.1-001	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.70"	NA	inter
CUST_14890_PI429285431	0.92357343	A	1.8163898	A	0.538561733280829	0	lncRNA	16554-1_{1..507}	lnc-RP11-342M21.2.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-342M21.2.1-2:2	chr15	 67234238	 67234744	-	lnc-RP11-342M21.2.1-2	lnc-RP11-342M21.2.1-2:2	XLOC_011509	linc-LCTL-1	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40"	NA	inter
CUST_33364_PI429285431	0.9087676	A	0.9175525	A	0.993929273113471	0	lncRNA	34944-1_{1..1553}	n340082|AK057812|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2537|NULL|-0.9927030|-0.2470093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340082|AK057812|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2537|NULL|-0.9927030|-0.2470093	chr10	 78312992	 78314544	-	NA	NA	NA	NA	C10orf11	NA	chr10:78302992-78317130	inner
CUST_18538_PI429285431	0.91079336	A	1.1314832	A	0.85815500236424	0	lncRNA	20250-1_{1..155}	lnc-HIATL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HIATL1-1:1	chr9	 97250008	 97250162	+	lnc-HIATL1-1	lnc-HIATL1-1:1	ENSG00000235311	RP11-533K9.2	FBP2	NA	chr9:97258554-97260077	inter
CUST_11472_PI429285431	9.053304	P	8.899703	P	1.11234244224612	0	lncRNA	13038-1_{1..357}	lnc-GRIA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRIA3-1:1	chrX	121593260	121593616	+	lnc-GRIA3-1	lnc-GRIA3-1:1	XLOC_008061	linc-GRIA3	NA	NA	NA	inter
CUST_29577_PI429285431	1.3357155	A	1.0866582	A	1.18843030540231	0	lncRNA	31337-1_{1..314}	n333078|AF277726|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076013|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076013|1.3485200|-0.1804477	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333078|AF277726|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076013|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076013|1.3485200|-0.1804477	chr5	137654894	137655207	-	NA	NA	NA	NA	CDC25C	NA	chr5:137644894-137667516	inner
CUST_27778_PI429285431	5.709674	P	5.9253488	P	0.861143278029316	0	lncRNA	29363-1_{1..594}	n324998|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079119|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079119|-1.3272200|-0.2828138	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324998|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079119|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079119|-1.3272200|-0.2828138	chr20	 35554349	 35554942	-	NA	NA	NA	NA	SAMHD1	NA	chr20:35544349-35567578	inner
CUST_47777_PI429285431	1.8569077	A	1.3854407	A	1.38651862872785	0	lncRNA	51705-2_{3001..6000}	"gi|385137086|ref|NR_047624.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 54, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137086|ref|NR_047624.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 54, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047624.1	NA	NA	NA	NA	NA	inter
CUST_3711_PI429285431	1.4151617	A	1.2067525	A	1.15541345473182	0	lncRNA	3679-1_{1..1227}	"transcript_id ""ENST00000433152.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433152.3"" | genecode_v17"	chr10	 67330208	 67331434	+	ENSG00000228065.5	ENST00000433152.3	RP11-222A11.1	RP11-222A11.1-001	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70"	NA	inter
CUST_8359_PI429285431	0.9024621	A	0.91451496	A	0.991680395140994	0	lncRNA	9939-1_{1..1103}	lnc-C19orf54-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C19orf54-1:1	chr19	 41302132	 41303234	-	lnc-C19orf54-1	lnc-C19orf54-1:1	ENSG00000249523	AC008537.3	RAB4B	"hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_IFNAR2:range=chr21:34614228-346350215'pad=0,hg19_refFlat_IFNAR2:range=chr21:34614228-346350215'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80chr19:41292132-41302849"	NA	inter
CUST_42056_PI429285431	0.8870642	A	0.8991096	A	0.991685523012557	0	lncRNA	43961-1_{1..96}	ENST00000384895 ncrna:miRNA chromosome:GRCh37:5:53247334:53247429:-1 gene:ENSG00000207627 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384895 ncrna:miRNA chromosome:GRCh37:5:53247334:53247429:-1 gene:ENSG00000207627 gene_biotype:miRNA transcript_biotype:miRNA	chr5	 53247334	 53247429	-	ENSG00000207627	ENST00000384895	NA	NA	ARL15	NA	chr5:53237334-53257429	inner
CUST_11255_PI429285431	1.5449529	A	1.0625937	A	1.3970263186415	0	lncRNA	12813-1_{1..599}	lnc-ABCD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABCD3-1:1	chr1	 95008015	 95008613	+	lnc-ABCD3-1	lnc-ABCD3-1:1	XLOC_000302	linc-SLC44A3-2	F3	NA	chr1:94998015-95007413	inter
CUST_46682_PI429285431	5.072372	P	4.617818	P	1.37035910168622	0	lncRNA	50847-2_{3001..6000}	"gi|224586818|ref|NR_027264.1| Homo sapiens golgi glycoprotein 1 (GLG1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224586818|ref|NR_027264.1| Homo sapiens golgi glycoprotein 1 (GLG1), transcript variant 4, non-coding RNA"	Chr16	 74484325	 74487324	-	2734	NR_027264.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30"	NA	inter
CUST_51213_PI429285431	1.6667886	A	1.6054561	A	1.04342904641233	0	lncRNA	54831-1_{1..1361}	hg19_lincRNAsTranscripts_TCONS_l2_00008906 range=chr15:20433049-20444933 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008906 range=chr15:20433049-20444933 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 20433049	 20434409	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27570_PI429285431	3.1444678	P	3.1739452	A	0.9797751458045	0	lncRNA	29148-2_{3001..3466}	n324769|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206848|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206848|0.9151980|-0.2357284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324769|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206848|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206848|0.9151980|-0.2357284	chr21	 46075302	 46075767	-	NA	NA	NA	NA	TSPEAR	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90chr21:46062302-46090761"	NA	inner
CUST_21224_PI429285431	5.796764	P	6.059539	P	0.833483185490382	0	lncRNA	22849-1_{1..371}	lnc-RXRG-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RXRG-1:7	chr1	165470668	165471038	-	lnc-RXRG-1	lnc-RXRG-1:7	ENSG00000237463.1	RP11-280O1.2	NA	NA	NA	inter
CUST_45022_PI429285431	6.0682716	P	6.096031	P	0.980942583331184	0	lncRNA	49523-1_{1..3000}	"gi|304434829|ref|NR_036570.1| Homo sapiens paired immunoglobin-like type 2 receptor beta (PILRB), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|304434829|ref|NR_036570.1| Homo sapiens paired immunoglobin-like type 2 receptor beta (PILRB), transcript variant 2, non-coding RNA"	Chr7	 99933688	 99936687	+	101752399	NR_036570.1	NA	NA	NA	"hg19_refFlat_LOC100289561:range=chr7:102006509-1020209875'pad=0,hg19_refFlat_LOC100289561:range=chr7:102006509-1020209875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_43694_PI429285431	13.28061	P	13.260636	P	1.01394120655267	0	lncRNA	48444-1_{1..1625}	"gi|399220377|ref|NR_073080.1| Homo sapiens pleckstrin homology-like domain, family A, member 3 (PHLDA3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|399220377|ref|NR_073080.1| Homo sapiens pleckstrin homology-like domain, family A, member 3 (PHLDA3), transcript variant 2, non-coding RNA"	Chr1	201434607	201436231	-	23612	NR_073080.1	NA	NA	NA	NA	NA	inter
CUST_27397_PI429285431	0.89739496	A	0.91321766	A	0.989092463425476	0	lncRNA	28961-1_{1..3000}	n324562|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040121|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040121|0.3137500|-0.3008761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324562|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040121|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040121|0.3137500|-0.3008761	chr6	 26630054	 26633053	+	NA	NA	NA	NA	ZNF322A	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70chr6:26631313-26644786"	NA	inner
CUST_20456_PI429285431	8.804718	P	8.83624	P	0.978387583383987	0	lncRNA	22100-1_{1..939}	lnc-ZNF765-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF765-1:2	chr19	 53953133	 53954071	+	lnc-ZNF765-1	lnc-ZNF765-1:2	ENSG00000160336.10	ZNF761	ZNF761	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr19:53943133-53961515"	NA	inner
CUST_756_PI429285431	0.8817938	A	0.8841809	A	0.998346756480446	0	lncRNA	747-1_{1..373}	"transcript_id ""ENST00000432665.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432665.1"" | genecode_v17"	chr2	 11539295	 11539667	+	ENSG00000224177.2	ENST00000432665.1	LINC00570	LINC00570-004	NA	NA	NA	inter
CUST_20166_PI429285431	0.93521774	A	2.1071622	A	0.44382275432549	0	lncRNA	21811-1_{1..465}	lnc-C1orf50-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf50-1:1	chr1	 43222782	 43223246	+	lnc-C1orf50-1	lnc-C1orf50-1:1	ENSG00000234866.1	RP5-994D16.7	LEPRE1	NA	chr1:43212782-43232755	inner
CUST_48974_PI429285431	2.46775	A	1.8430934	A	1.54184378167484	0	lncRNA	52813-1_{1..871}	hg19_lincRNAsTranscripts_TCONS_l2_00019076 range=chr3:194429212-194430208 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019076 range=chr3:194429212-194430208 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	194429212	194430082	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22924_PI429285431	1.10328	A	0.8814777	A	1.16618954982284	0	lncRNA	24500-1_{1..839}	lnc-PSMA8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PSMA8-1:1	chr18	 23846734	 23847572	+	lnc-PSMA8-1	lnc-PSMA8-1:1	ENSG00000266237.1	RP11-25D3.1	TAF4B	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30chr18:23836734-23857373"	NA	inner
CUST_14503_PI429285431	0.92368615	A	0.89663404	A	1.01892799952908	0	lncRNA	16169-1_{1..405}	lnc-AC021860.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC021860.1-5:1	chr4	 38208146	 38208550	-	lnc-AC021860.1-5	lnc-AC021860.1-5:1	XLOC_003925	linc-RELL1-3	NA	NA	NA	inter
CUST_13108_PI429285431	1.4881328	A	0.8815752	A	1.5226217587143	0	lncRNA	14732-1_{1..322}	lnc-ASB15-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASB15-2:1	chr7	123175659	123175980	+	lnc-ASB15-2	lnc-ASB15-2:1	XLOC_006223	linc-ASB15-1	IQUB	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70chr7:123165659-123174718"	NA	inter
CUST_14182_PI429285431	0.8874593	A	0.897232	A	0.99324897182386	0	lncRNA	15834-1_{1..1031}	lnc-FAM20C-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM20C-7:1	chr7	   467264	   468294	+	lnc-FAM20C-7	lnc-FAM20C-7:1	XLOC_005957	linc-HEATR2-3	NA	NA	NA	inter
CUST_40828_PI429285431	1.6474164	A	0.89643717	A	1.68293473574548	0	lncRNA	41531-1_{1..2305}	n410598|NR_037853_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037853_2||-0.8080810|-0.2309777	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410598|NR_037853_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037853_2||-0.8080810|-0.2309777	chr6	  2791676	  2793980	-	NA	NA	NA	NA	WRNIP1	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60chr6:2781676-2785979"	NA	inter
LNCA_21_P0007862	0.879537	A	0.88304025	A	0.997574677997178	0	lncRNA	TCONS_00021250	NA	NA	NA	NA	XLOC_009937	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009937), lincRNA [TCONS_00021250]"	chr12:126651704-126651763	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00021250	TCONS_00021250	chr12	126651704	126651763	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27330_PI429285431	6.034936	P	6.1245117	P	0.939799105697777	0	lncRNA	28890-1_{1..534}	n324485|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041119|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041119|-1.0063300|-0.3835392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324485|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041119|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041119|-1.0063300|-0.3835392	chr6	 69399275	 69399808	-	NA	NA	NA	NA	BAI3	NA	chr6:69389275-69410937	inner
CUST_4153_PI429285431	2.1125822	A	1.8726254	A	1.1809572983641	0	lncRNA	4111-1_{1..795}	"transcript_id ""ENST00000304751.9"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000304751.9"" | genecode_v17"	chr12	  8388011	  8388805	+	ENSG00000215241.3	ENST00000304751.9	RP11-266K4.9	RP11-266K4.9-001	FAM90A1	"hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0,hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0 3'pad=0 strand=- repeatMasking=none,-95.40;hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0,hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0,hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0 3'pad=0 strand=- repeatMasking=none,-95.30chr12:8378011-8380214"	NA	inter
CUST_22852_PI429285431	1.5166483	A	1.5641097	A	0.967637509403165	0	lncRNA	24430-1_{1..738}	lnc-RP11-404P21.6.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-404P21.6.1-1:1	chr14	 96734706	 96735443	-	lnc-RP11-404P21.6.1-1	lnc-RP11-404P21.6.1-1:1	ENSG00000258793.1	RP11-404P21.3	BDKRB1	NA	chr14:96724706-96731100	inter
CUST_45061_PI429285431	3.2502844	P	3.3290155	P	0.94689010305794	0	lncRNA	49550-2_{3001..4215}	"gi|110671311|ref|NR_003102.1| Homo sapiens protection of telomeres 1 homolog (S. pombe) (POT1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|110671311|ref|NR_003102.1| Homo sapiens protection of telomeres 1 homolog (S. pombe) (POT1), transcript variant 2, non-coding RNA"	Chr7	124465440	124466654	-	25913	NR_003102.1	NA	NA	NA	NA	NA	inter
CUST_48197_PI429285431	2.9443676	A	3.325777	P	0.767687253905347	0	lncRNA	52060-1_{1..1707}	"gi|397138579|ref|XR_133542.2| PREDICTED: Homo sapiens dead end protein homolog 1-like (LOC100134173), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138579|ref|XR_133542.2| PREDICTED: Homo sapiens dead end protein homolog 1-like (LOC100134173), misc_RNA"	NA	NA	NA	NA	NA	XR_133542.2	NA	NA	NA	"hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0,hg19_refFlat_C20orf203:range=chr20:31238234-312389545'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50"	NA	Unknown
LNCA_33_P3232702	2.5614882	A	0.8806581	A	3.20612372394042	0	lncRNA	XR_111243	XR_111243	XR_111243	100129223	Hs.586788	LOC100129223	uncharacterized LOC100129223	NA	THC2612216	NA	"PREDICTED: Homo sapiens hypothetical LOC100129223 (LOC100129223), miscRNA [XR_111243]"	chr12:3596084-3596025	hs|12p13.32	Agilent_HUMAN_G3V2	XR_111243	XR_111243	chr12	  3596025	  3596084	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40273_PI429285431	1.1731789	A	0.90384835	A	1.20524842964171	0	lncRNA	41083-1_{1..924}	n408218|NR_028375|lncRNA|Homosapiens||RefGeneNoncode|NR_028375||-0.3333860|-0.3241003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,lncrnadb20130808,NONCODERv3,"	>n408218|NR_028375|lncRNA|Homosapiens||RefGeneNoncode|NR_028375||-0.3333860|-0.3241003	chr5	 76007762	 76008685	+	NA	NA	NA	NA	IQGAP2	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr5:75997762-76003957"	NA	inter
CUST_31640_PI429285431	0.9017308	A	0.908201	A	0.995525240814555	0	lncRNA	33392-1_{1..269}	n338162|AF147375|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|551|NULL|-1.1587200|-0.4135684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338162|AF147375|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|551|NULL|-1.1587200|-0.4135684	chr15	 99675517	 99675785	-	NA	NA	NA	NA	TTC23	NA	chr15:99676528-99685793	inner
CUST_2659_PI429285431	1.5641729	A	1.76933	A	0.867444223039003	0	lncRNA	2645-1_{1..455}	"transcript_id ""ENST00000436295.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436295.1"" | genecode_v17"	chr6	147180317	147180771	+	ENSG00000227748.1	ENST00000436295.1	RP11-497D6.3	RP11-497D6.3-001	NA	NA	NA	inter
CUST_23939_PI429285431	6.523559	P	6.459875	P	1.04513115534316	0	lncRNA	25496-1_{1..608}	lnc-SRGAP3-1:24	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRGAP3-1:24	chr3	  9404524	  9405131	-	lnc-SRGAP3-1	lnc-SRGAP3-1:24	ENSG00000254485.1	RP11-380O24.1	THUMPD3	NA	chr3:9404717-9414690	inter
CUST_15435_PI429285431	0.88003093	A	0.88093	A	0.999377006305582	0	lncRNA	17123-1_{1..494}	lnc-MAT2B-3:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAT2B-3:15	chr5	163978153	163978646	+	lnc-MAT2B-3	lnc-MAT2B-3:15	XLOC_004626	linc-ODZ2-1	NA	NA	NA	inter
CUST_14424_PI429285431	0.88723713	A	0.8801736	A	1.00490807121991	0	lncRNA	16085-1_{1..982}	lnc-SPOPL-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPOPL-3:2	chr2	140020835	140021816	+	lnc-SPOPL-3	lnc-SPOPL-3:2	XLOC_001690	linc-KYNU-3	NA	NA	NA	inter
CUST_19730_PI429285431	7.2215414	P	6.7446165	P	1.39177394066124	0	lncRNA	21388-1_{1..416}	lnc-IDS-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IDS-1:10	chrX	148614417	148614832	-	lnc-IDS-1	lnc-IDS-1:10	ENSG00000241489.2	AF011889.5	CXorf40A	NA	chrX:148622519-148624529	inter
LNCA_21_P0009039	4.0182495	P	4.6677003	P	0.637522957436794	0	lncRNA	TCONS_00024668	NA	NA	NA	NA	XLOC_011952	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011952), lincRNA [TCONS_00024668]"	chr16:55470409-55463358	hs|16q12.2	Agilent_HUMAN_G3V2	TCONS_00024668	TCONS_00024668	chr16	 55463358	 55470409	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26328_PI429285431	0.91668904	A	1.3998739	A	0.715396586662309	0	lncRNA	27835-1_{1..649}	lnc-RP11-778D12.2.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-778D12.2.1-5:1	chr8	106697973	106698621	-	lnc-RP11-778D12.2.1-5	lnc-RP11-778D12.2.1-5:1	ENSG00000253420.1	RP11-642D21.2	ZFPM2	NA	chr8:106687973-106707993	inner
CUST_17489_PI429285431	4.3485107	P	4.645529	P	0.813932860597559	0	lncRNA	19216-1_{1..642}	lnc-WDR60-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR60-1:1	chr7	158749908	158750549	+	lnc-WDR60-1	lnc-WDR60-1:1	XLOC_006319	TCONS_00014242	NA	NA	NA	inter
CUST_39201_PI429285431	0.8799782	A	0.8854948	A	0.996183485737654	0	lncRNA	40176-1_{1..969}	n385981|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xjd.1||-0.9153670|-0.2570809	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385981|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xjd.1||-0.9153670|-0.2570809	chr10	 13048110	 13049078	-	NA	NA	NA	NA	CCDC3	NA	chr10:13038110-13043704	inter
CUST_12277_PI429285431	3.382925	P	3.4584842	P	0.948974219746751	0	lncRNA	13886-1_{1..639}	lnc-WRNIP1-2:28	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRNIP1-2:28	chr6	  2399117	  2399755	+	lnc-WRNIP1-2	lnc-WRNIP1-2:28	XLOC_005127	linc-WRNIP1-2	NA	NA	NA	inter
CUST_6327_PI429285431	0.88354033	A	1.6012322	A	0.608069498867135	0	lncRNA	6251-1_{1..478}	"transcript_id ""ENST00000593792.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593792.1"" | genecode_v17"	chr19	  8740121	  8740598	+	ENSG00000268480.1	ENST00000593792.1	CTD-2586B10.1	CTD-2586B10.1-001	NA	NA	NA	inter
CUST_2609_PI429285431	1.1581581	A	1.1234016	A	1.0243839115534	0	lncRNA	2596-1_{1..511}	"transcript_id ""ENST00000430728.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430728.1"" | genecode_v17"	chr6	113749753	113750263	-	ENSG00000232316.1	ENST00000430728.1	RP1-124C6.1	RP1-124C6.1-001	NA	NA	NA	inter
CUST_24508_PI429285431	1.580698	A	1.086227	A	1.40880408738385	0	lncRNA	26059-1_{1..711}	lnc-APC-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-APC-3:1	chr5	111592560	111593270	+	lnc-APC-3	lnc-APC-3:1	ENSG00000251076.1	RP11-526F3.1	EPB41L4A	NA	chr5:111582560-111603006	inner
CUST_20545_PI429285431	1.1439831	A	3.136853	A	0.251238610392433	0	lncRNA	22186-1_{1..564}	lnc-NUB1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUB1-2:1	chr7	151135917	151136480	+	lnc-NUB1-2	lnc-NUB1-2:1	ENSG00000241456.1	RP4-555L14.4	CRYGN	NA	chr7:151127056-151137099	inner
CUST_3968_PI429285431	0.91167986	A	1.3946189	A	0.715518493071522	0	lncRNA	3938-1_{1..452}	"transcript_id ""ENST00000594089.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594089.1"" | genecode_v17"	chr11	 64546426	 64546877	+	ENSG00000269038.1	ENST00000594089.1	AP001462.6	AP001462.6-001	MAP4K2	NA	chr11:64556609-64556877	inter
CUST_43808_PI429285431	8.730225	P	8.72135	P	1.00617064167804	0	lncRNA	48533-1_{1..3000}	"gi|299829292|ref|NR_033875.1| Homo sapiens uncharacterized LOC400946 (FLJ12334), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|299829292|ref|NR_033875.1| Homo sapiens uncharacterized LOC400946 (FLJ12334), non-coding RNA"	Chr2	 20068615	 20071614	+	400946	NR_033875.1	NA	NA	NA	NA	NA	inter
CUST_16049_PI429285431	0.8970326	A	0.89408606	A	1.00204447298412	0	lncRNA	17748-1_{1..2136}	lnc-NOTCH2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOTCH2-2:1	chr1	120617808	120619943	-	lnc-NOTCH2-2	lnc-NOTCH2-2:1	XLOC_000986	linc-NOTCH2-3	NOTCH2	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00chr1:120607808-120612317"	NA	inter
LNCA_21_P0012717	0.8825908	A	0.8854477	A	0.998021707225621	0	lncRNA	TCONS_l2_00021546	NA	NA	NA	NA	XLOC_l2_010602	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010602), lincRNA [TCONS_l2_00021546]"	chr4:23043079-23043138	hs|4p15.2	Agilent_HUMAN_G3V2	TCONS_l2_00021546	TCONS_l2_00021546	chr4	 23043079	 23043138	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31344_PI429285431	4.023507	P	3.1087198	A	1.88529096766609	0	lncRNA	33126-1_{1..1763}	n337812|BC017506|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|195|NULL|-0.7556320|-0.1918135	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337812|BC017506|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|195|NULL|-0.7556320|-0.1918135	chr1	 31196181	 31197943	+	NA	NA	NA	NA	MATN1	"hg19_refFlat_MATN1:range=chr1:31186429-311963985'pad=0,hg19_refFlat_MATN1:range=chr1:31186429-311963985'pad=0 3'pad=0 strand=- repeatMasking=none,-104.00chr1:31186181-31196432"	NA	inter
CUST_46732_PI429285431	2.7144325	A	3.6597376	P	0.519319714714829	0	lncRNA	50884-1_{1..672}	"gi|372624394|ref|NR_045985.1| Homo sapiens arachidonate 15-lipoxygenase pseudogene 1 (ALOX15P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372624394|ref|NR_045985.1| Homo sapiens arachidonate 15-lipoxygenase pseudogene 1 (ALOX15P1), non-coding RNA"	Chr17	  6561038	  6561709	+	100652883	NR_045985.1	NA	NA	NA	NA	NA	inter
CUST_209_PI429285431	4.9867325	P	5.1610994	P	0.886156307073676	0	lncRNA	199-1_{1..687}	"transcript_id ""ENST00000448134.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448134.1"" | genecode_v17"	chr1	 32814795	 32815481	-	ENSG00000233775.1	ENST00000448134.1	RP4-811H24.9	RP4-811H24.9-001	NA	NA	NA	inter
CUST_41110_PI429285431	7.319192	P	7.6446457	P	0.79804737625195	0	lncRNA	41858-1_{1..120}	ENST00000390222 ncrna:miRNA chromosome:GRCh37:12:66251793:66251912:1 gene:ENSG00000211577 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390222 ncrna:miRNA chromosome:GRCh37:12:66251793:66251912:1 gene:ENSG00000211577 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 66251793	 66251912	+	ENSG00000211577	ENST00000390222	NA	NA	HMGA2	NA	chr12:66241793-66261912	inner
CUST_20408_PI429285431	0.9106461	A	1.1306455	A	0.858565793505155	0	lncRNA	22050-1_{1..381}	lnc-KCNMA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNMA1-1:1	chr10	 78198296	 78198676	-	lnc-KCNMA1-1	lnc-KCNMA1-1:1	ENSG00000230575.1	RP11-369F10.2	C10orf11	NA	chr10:78188296-78208533	inner
CUST_39783_PI429285431	0.91080886	A	0.93064475	A	0.986344897195451	0	lncRNA	40697-1_{1..1496}	n406119|NR_003509|lncRNA|Homosapiens||RefGeneNoncode|NR_003509||2.8632400|-0.2482883	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406119|NR_003509|lncRNA|Homosapiens||RefGeneNoncode|NR_003509||2.8632400|-0.2482883	chrY	 20708556	 20710051	+	NA	NA	NA	NA	HSFY1	NA	chrY:20698556-20750849	inner
CUST_35237_PI429285431	3.1790628	P	1.4997333	A	3.20279065084764	0	lncRNA	36638-1_{1..690}	n342231|CR613437|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4721|NULL|-1.2815000|-0.3458646	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342231|CR613437|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4721|NULL|-1.2815000|-0.3458646	chrX	 75109182	 75109871	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43008_PI429285431	4.703701	P	4.9280987	P	0.855952296244921	0	lncRNA	46179-1_{1..129}	ENST00000459014 ncrna:snoRNA chromosome:GRCh37:1:161110998:161111126:-1 gene:ENSG00000238934 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459014 ncrna:snoRNA chromosome:GRCh37:1:161110998:161111126:-1 gene:ENSG00000238934 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	161110998	161111126	-	ENSG00000238934	ENST00000459014	NA	NA	DEDD	NA	chr1:161100998-161102478	inter
LNCA_21_P0009043	1.1255894	A	0.92636234	A	1.14808309184067	0	lncRNA	TCONS_00024693	NA	NA	NA	NA	XLOC_011973	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011973), lincRNA [TCONS_00024693]"	chr16:60852582-60852523	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024693	TCONS_00024693	chr16	 60852523	 60852582	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24333_PI429285431	3.3063283	P	4.377476	P	0.475940226022835	0	lncRNA	25886-1_{1..1438}	lnc-TSSK2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TSSK2-2:1	chr22	 19158908	 19160345	+	lnc-TSSK2-2	lnc-TSSK2-2:1	ENSG00000260924.1	AC004463.6	CLTCL1	NA	chr22:19166986-19170345	inter
CUST_13144_PI429285431	0.90878206	A	0.92672133	A	0.987642435209054	0	lncRNA	14772-1_{1..3000}	lnc-DPH3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DPH3-1:1	chr3	 16286555	 16289554	-	lnc-DPH3-1	lnc-DPH3-1:1	XLOC_003061	linc-ANKRD28	DPH3	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30chr3:16298568-16300513"	NA	inter
CUST_7725_PI429285431	3.2534935	P	2.9051526	A	1.27309572445774	0	lncRNA	9356-1_{1..601}	lnc-ENPP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENPP1-1:2	chr6	132228546	132229146	+	lnc-ENPP1-1	lnc-ENPP1-1:2	ENSG00000236673	RP11-69I8.2	NA	NA	NA	inter
LNCA_21_P0012652	0.90546334	A	0.9279716	A	0.984519536557345	0	lncRNA	TCONS_l2_00021036	NA	NA	NA	NA	XLOC_l2_011033	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011033), lincRNA [TCONS_l2_00021036]"	chr4:6020070-6020011	hs|4p16.1	Agilent_HUMAN_G3V2	TCONS_l2_00021036	TCONS_l2_00021036	chr4	  6020011	  6020070	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49424_PI429285431	1.1507995	A	1.1148233	A	1.02525032429404	0	lncRNA	53227-1_{1..212}	hg19_lincRNAsTranscripts_TCONS_l2_00022656 range=chr5:177236176-177236486 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022656 range=chr5:177236176-177236486 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	177236176	177236387	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35099_PI429285431	1.0273453	A	1.3002058	A	0.827676843619995	0	lncRNA	36506-1_{1..2041}	n342068|AK090662|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4549|NULL|-0.9868480|-0.1629273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342068|AK090662|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4549|NULL|-0.9868480|-0.1629273	chr12	131614273	131616313	-	NA	NA	NA	NA	GPR133	"hg19_refFlat_GPR133:range=chr12:131439011-1316238085'pad=0,hg19_refFlat_GPR133:range=chr12:131439011-1316238085'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70chr12:131604273-131626010"	NA	inner
LNCA_21_P0014715	0.9016863	A	0.91870403	A	0.988273506039332	0	lncRNA	XR_112556	XR_112556	XR_112556	NA	Hs.729514	LOC100505668	uncharacterized LOC100505668	ENST00000462559	THC2601689	NA	"PREDICTED: Homo sapiens hypothetical LOC100505668 (LOC100505668), miscRNA [XR_112556]"	chr3:183016156-183016215	hs|3q27.1	Agilent_HUMAN_G3V2	XR_112556	XR_112556	chr3	183016156	183016215	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9160_PI429285431	0.91037786	A	0.91733176	A	0.995191521746512	0	lncRNA	10678-2_{3001..3574}	lnc-ECHDC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ECHDC1-1:1	chr6	127443482	127444055	-	lnc-ECHDC1-1	lnc-ECHDC1-1:1	ENSG00000248650	AL356534.1	RSPO3	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chr6:127440048-127450994"	NA	inner
CUST_12871_PI429285431	0.8963957	A	1.1256602	A	0.853069684171367	0	lncRNA	14498-1_{1..766}	lnc-CHMP2B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHMP2B-1:3	chr3	 87205942	 87206707	+	lnc-CHMP2B-1	lnc-CHMP2B-1:3	XLOC_002726	linc-CHMP2B-1	NA	NA	NA	inter
CUST_8038_PI429285431	3.6183202	P	3.8821342	P	0.832883143730981	0	lncRNA	9646-1_{1..381}	lnc-ZCCHC24-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZCCHC24-3:1	chr10	 80828733	 80829113	-	lnc-ZCCHC24-3	lnc-ZCCHC24-3:1	ENSG00000224596	RP11-202P11.1	ZMIZ1	NA	chr10:80828792-80838817	inner
CUST_42606_PI429285431	6.2045736	P	6.6770988	P	0.720702022956006	0	lncRNA	45468-1_{1..108}	ENST00000516327 ncrna:snoRNA chromosome:GRCh37:4:106027144:106027251:1 gene:ENSG00000252136 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516327 ncrna:snoRNA chromosome:GRCh37:4:106027144:106027251:1 gene:ENSG00000252136 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	106027144	106027251	+	ENSG00000252136	ENST00000516327	NA	NA	NA	NA	NA	inter
CUST_35908_PI429285431	0.883991	A	1.360765	A	0.718582646334599	0	lncRNA	37281-1_{1..3000}	n344556|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_104|NULL|-1.4892000|-0.2648711	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344556|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_104|NULL|-1.4892000|-0.2648711	chr6	 21666103	 21669102	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50"	NA	inter
CUST_51396_PI429285431	9.225634	P	8.706907	P	1.43269051786851	0	lncRNA	54979-3_{6001..6927}	hg19_lincRNAsTranscripts_TCONS_l2_00009673 range=chr16:31711933-31724238 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009673 range=chr16:31711933-31724238 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 31717933	 31718859	+	NA	NA	NA	NA	ZNF720	"hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20chr16:31724550-31734238"	NA	inter
CUST_15276_PI429285431	1.9378693	A	2.0671926	A	0.914260185877757	0	lncRNA	16951-1_{1..288}	lnc-LRRC8D-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC8D-3:1	chr1	 90227562	 90227849	+	lnc-LRRC8D-3	lnc-LRRC8D-3:1	XLOC_000290	linc-LRRC8D-3	NA	NA	NA	inter
CUST_7960_PI429285431	5.399639	P	5.347454	P	1.03683404803596	0	lncRNA	9572-1_{1..706}	lnc-CRYBA4-1:43	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:43	chr22	 27117613	 27118318	+	lnc-CRYBA4-1	lnc-CRYBA4-1:43	ENSG00000244625	XLOC_014192	NA	NA	NA	inter
CUST_35287_PI429285431	1.0752871	A	0.8986005	A	1.13028500601231	0	lncRNA	36690-1_{1..1210}	n342307|BC038391|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4799|NULL|-0.4329460|-0.1861053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342307|BC038391|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4799|NULL|-0.4329460|-0.1861053	chr1	152758752	152759961	+	NA	NA	NA	NA	LCE1D	NA	chr1:152769227-152770657	inner
CUST_13757_PI429285431	1.3998739	A	1.9664234	A	0.675229808798634	0	lncRNA	15402-1_{1..671}	lnc-REEP5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-REEP5-1:1	chr5	112018541	112019211	-	lnc-REEP5-1	lnc-REEP5-1:1	XLOC_004956	linc-EPB41L4A	NA	NA	NA	inter
LNCA_21_P0006244	3.340661	P	2.9815037	P	1.28267644798284	0	lncRNA	TCONS_00016726	NA	NA	NA	NA	XLOC_007615	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007615), lincRNA [TCONS_00016726]"	chr9:139543164-139543223	hs|9q34.3	Agilent_HUMAN_G3V2	TCONS_00016726	TCONS_00016726	chr9	139543164	139543223	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19325_PI429285431	0.8729394	A	0.8800192	A	0.995104677928422	0	lncRNA	20991-1_{1..292}	lnc-WRN-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-WRN-7:3	chr8	 31996731	 31997022	+	lnc-WRN-7	lnc-WRN-7:3	ENSG00000253974.1	NRG1-IT1	NRG1	NA	chr8:31986731-32006793	inner
CUST_40678_PI429285431	8.164618	P	7.7982163	P	1.28913352327571	0	lncRNA	41413-1_{1..599}	n410235|NR_037171_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037171_4||-0.9154930|-0.2292378	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410235|NR_037171_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037171_4||-0.9154930|-0.2292378	chr6	  3435316	  3435914	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3425316-3446880	inner
LNCA_21_P0005683	0.88241535	A	0.8890848	A	0.995387758739935	0	lncRNA	TCONS_00014668	NA	NA	NA	NA	XLOC_006766	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006766), lincRNA [TCONS_00014668]"	chr8:31258549-31258608	hs|8p12	Agilent_HUMAN_G3V2	TCONS_00014668	TCONS_00014668	chr8	 31258549	 31258608	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11703_PI429285431	4.398846	P	4.9515185	P	0.681756048586749	0	lncRNA	13281-1_{1..630}	lnc-SRPK2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRPK2-1:2	chr7	104654588	104655217	-	lnc-SRPK2-1	lnc-SRPK2-1:2	XLOC_006554	linc-ORC5-2	MLL5	NA	chr7:104654637-104664602	inter
LNCA_21_P0014531	1.3583039	A	0.88796633	A	1.38543360183058	0	lncRNA	XR_110224	XR_110224	XR_110224	NA	NA	LOC100506536	uncharacterized LOC100506536	NA	THC2562352	NA	"PREDICTED: Homo sapiens hypothetical LOC100506536 (LOC100506536), miscRNA [XR_110224]"	chr14:75323053-75323112	hs|14q24.3	Agilent_HUMAN_G3V2	XR_110224	XR_110224	chr14	 75323053	 75323112	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37727_PI429285431	3.3413827	P	3.952561	P	0.654661798106456	0	lncRNA	38824-1_{1..3000}	n346231|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1781|NULL|-1.4184500|-0.2005877	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n346231|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1781|NULL|-1.4184500|-0.2005877	chr10	  5636946	  5639945	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50"	NA	inter
CUST_3218_PI429285431	2.3639188	A	1.7338376	A	1.54765209844699	0	lncRNA	3197-1_{1..761}	"transcript_id ""ENST00000520649.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520649.1"" | genecode_v17"	chr8	 87778163	 87778923	+	ENSG00000253778.1	ENST00000520649.1	RP11-386D6.2	RP11-386D6.2-001	NA	NA	NA	inter
CUST_21254_PI429285431	6.045299	P	5.1211486	P	1.89756644001127	0	lncRNA	22879-2_{3001..4740}	lnc-TBC1D29-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBC1D29-1:6	chr17	 28964012	 28965751	+	lnc-TBC1D29-1	lnc-TBC1D29-1:6	ENSG00000214719.5	LRRC37BP1	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10"	NA	inter
LNCA_21_P0003016	0.8792965	A	1.4114814	A	0.691506683314621	0	lncRNA	TCONS_00006941	NA	NA	NA	NA	XLOC_002779	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002779), lincRNA [TCONS_00006941]"	chr3:119823971-119824030	hs|3q13.33	Agilent_HUMAN_G3V2	TCONS_00006941	TCONS_00006941	chr3	119823971	119824030	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3213675	0.8791915	A	0.88225657	A	0.997877710618813	0	lncRNA	XR_109896	XR_109896	XR_109896	100128406	Hs.654329	AZFP	AML-associated zinc finger protein	NA	NA	NA	"PREDICTED: Homo sapiens AML-associated zinc finger protein (AZFP), miscRNA [XR_109896]"	chr2:133089399-133089340	hs|2q21.2	Agilent_HUMAN_G3V2	XR_109896	XR_109896	chr2	133089340	133089399	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11788_PI429285431	10.334172	P	10.089851	P	1.18453514189403	0	lncRNA	13369-1_{1..585}	lnc-MYO6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYO6-3:1	chr6	 77484885	 77485469	+	lnc-MYO6-3	lnc-MYO6-3:1	XLOC_005355	linc-IRAK1BP1-2	NA	NA	NA	inter
CUST_25124_PI429285431	6.351526	P	6.3183393	P	1.02326988311405	0	lncRNA	26662-1_{1..1241}	lnc-AGAP10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGAP10-1:1	chr10	 47243467	 47244707	-	lnc-AGAP10-1	lnc-AGAP10-1:1	ENSG00000254929.1	RP11-144G6.12	NA	NA	NA	inter
CUST_19872_PI429285431	0.8906459	A	0.9034405	A	0.991170668596598	0	lncRNA	21528-1_{1..717}	lnc-TMEM194B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM194B-1:1	chr2	191573360	191574076	-	lnc-TMEM194B-1	lnc-TMEM194B-1:1	ENSG00000228509.1	AC006460.2	NA	NA	NA	inter
CUST_49352_PI429285431	5.5831785	P	5.7450013	P	0.893894948869644	0	lncRNA	53165-1_{1..831}	hg19_lincRNAsTranscripts_TCONS_l2_00022977 range=chr5:79646844-79647782 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022977 range=chr5:79646844-79647782 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 79646844	 79647674	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014772	0.8790257	A	0.88063794	A	0.998883104582116	0	lncRNA	XR_132546	XR_132546	XR_132546	NA	NA	LOC100506633	ubiquitin-fold modifier 1 pseudogene	NA	NA	NA	"PREDICTED: Homo sapiens ubiquitin-fold modifier 1-like (LOC100506633), miscRNA [XR_132546]"	chr8:101177213-101177154	hs|8q22.2	Agilent_HUMAN_G3V2	XR_132546	XR_132546	chr8	101177154	101177213	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9528_PI429285431	1.6694121	A	1.4510243	A	1.16343273311988	0	lncRNA	11038-1_{1..778}	lnc-AGTPBP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AGTPBP1-3:1	chr9	 87655748	 87656525	-	lnc-AGTPBP1-3	lnc-AGTPBP1-3:1	XLOC_007754	linc-SLC28A3	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90"	NA	inter
CUST_39422_PI429285431	0.87714887	A	0.87689596	A	1.00017531922005	0	lncRNA	40381-2_{3001..6000}	n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	chr13	 19411542	 19414541	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_12657_PI429285431	0.9102779	A	0.91355896	A	0.997728326675924	0	lncRNA	14272-1_{1..395}	lnc-CHD9-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD9-3:2	chr16	 52644602	 52644996	+	lnc-CHD9-3	lnc-CHD9-3:2	XLOC_011726	linc-CHD9-2	NA	NA	NA	inter
CUST_46881_PI429285431	6.080288	P	6.250296	P	0.888837752389849	0	lncRNA	51006-2_{3001..6000}	"gi|373838811|ref|NR_046058.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 34, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373838811|ref|NR_046058.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 34, non-coding RNA"	Chr17	 48641429	 48644428	+	8913	NR_046058.1	NA	NA	NA	NA	NA	inter
CUST_14564_PI429285431	1.4120344	A	1.9868938	A	0.671351675782349	0	lncRNA	16232-3_{6001..6871}	lnc-TOMM20-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TOMM20-2:3	chr1	235105514	235106384	-	lnc-TOMM20-2	lnc-TOMM20-2:3	XLOC_001265	linc-IRF2BP2-1	NA	"hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00"	NA	inter
CUST_38364_PI429285431	0.90202194	A	1.8406289	A	0.521736416440037	0	lncRNA	39406-1_{1..3000}	n382152|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001wug.2||7.7536600|-0.2277774	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382152|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001wug.2||7.7536600|-0.2277774	chr14	 38080455	 38083454	+	NA	NA	NA	NA	TTC6	NA	chr14:38149377-38276038	inter
CUST_44818_PI429285431	3.0048592	A	2.129298	A	1.83472164368937	0	lncRNA	49352-1_{1..1022}	"gi|299829232|ref|NR_033896.1| Homo sapiens uncharacterized LOC441172 (FLJ46906), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299829232|ref|NR_033896.1| Homo sapiens uncharacterized LOC441172 (FLJ46906), non-coding RNA"	Chr6	139012805	139013826	+	441172	NR_033896.1	NA	NA	NA	NA	NA	inter
CUST_36223_PI429285431	1.1614053	A	0.8807614	A	1.21473692173477	0	lncRNA	37475-2_{3001..6000}	n344766|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_315|NULL|-1.3189000|-0.2587506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344766|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_315|NULL|-1.3189000|-0.2587506	chr14	 98395666	 98398665	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46615_PI429285431	5.058151	P	3.8327904	P	2.33813883926013	0	lncRNA	50792-1_{1..1059}	"gi|335353789|ref|NR_038379.1| Homo sapiens leucine carboxyl methyltransferase 1 pseudogene (LOC554206), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|335353789|ref|NR_038379.1| Homo sapiens leucine carboxyl methyltransferase 1 pseudogene (LOC554206), non-coding RNA"	Chr16	 25043062	 25044120	+	554206	NR_038379.1	NA	NA	NA	NA	NA	inter
CUST_10817_PI429285431	1.6736355	A	1.4550676	A	1.16357798025009	0	lncRNA	12352-1_{1..570}	lnc-PIEZO2-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIEZO2-5:3	chr18	 10406653	 10407222	-	lnc-PIEZO2-5	lnc-PIEZO2-5:3	XLOC_012762	linc-PPP4R1-7	NA	NA	NA	inter
CUST_18894_PI429285431	7.794201	P	7.7001104	P	1.06739236725215	0	lncRNA	20586-1_{1..221}	lnc-C14orf49-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C14orf49-4:4	chr14	 96000851	 96001071	-	lnc-C14orf49-4	lnc-C14orf49-4:4	ENSG00000247092	SNHG10	GLRX5	NA	chr14:96001323-96010923	inter
LNCA_21_P0007197	5.7018356	P	5.827695	P	0.916457955102164	0	lncRNA	ENST00000532199	NA	NA	NA	NA	XLOC_009113	NA	ENST00000532199	THC2697043	NA	"BROAD Institute lincRNA (XLOC_009113), lincRNA [TCONS_00019281]"	chr11:41877542-41877601	hs|11p12	Agilent_HUMAN_G3V2	ENST00000532199	ENST00000532199	chr11	 41877542	 41877601	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41232_PI429285431	3.8455496	P	4.872117	P	0.490876701925092	0	lncRNA	42149-1_{1..73}	ENST00000385245 ncrna:miRNA chromosome:GRCh37:19:13947401:13947473:-1 gene:ENSG00000207980 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385245 ncrna:miRNA chromosome:GRCh37:19:13947401:13947473:-1 gene:ENSG00000207980 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 13947401	 13947473	-	ENSG00000207980	ENST00000385245	NA	NA	ZSWIM4	NA	chr19:13937401-13943044	inter
CUST_16790_PI429285431	3.0052776	A	4.463294	P	0.363993249491581	0	lncRNA	18499-1_{1..1286}	lnc-CD276-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD276-2:1	chr15	 74061811	 74063096	+	lnc-CD276-2	lnc-CD276-2:1	XLOC_011305	linc-TBC1D21	NA	NA	NA	inter
CUST_20951_PI429285431	0.88004935	A	0.8816308	A	0.99890442297451	0	lncRNA	22582-1_{1..895}	lnc-GPR82-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR82-1:1	chrX	 42558396	 42559290	+	lnc-GPR82-1	lnc-GPR82-1:1	ENSG00000231772.1	RP1-154K9.2	NA	NA	NA	inter
LNCA_21_P0014507	1.3935697	A	0.8846954	A	1.42293947710802	0	lncRNA	XR_110147	XR_110147	XR_110147	NA	NA	LOC100505626	uncharacterized LOC100505626	NA	THC2634011	NA	"PREDICTED: Homo sapiens hypothetical LOC100505626 (LOC100505626), miscRNA [XR_110147]"	chr18:59113525-59113466	hs|18q21.33	Agilent_HUMAN_G3V2	XR_110147	XR_110147	chr18	 59113466	 59113525	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16496_PI429285431	5.259621	P	5.6409597	P	0.767724875729248	0	lncRNA	18193-1_{1..285}	lnc-GPR132-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR132-1:3	chr14	105533801	105534085	-	lnc-GPR132-1	lnc-GPR132-1:3	XLOC_011152	linc-GPR132	GPR132	NA	chr14:105523801-105531754	inter
CUST_4896_PI429285431	2.8978589	A	2.9643226	A	0.954975945989102	0	lncRNA	4838-1_{1..580}	"transcript_id ""ENST00000553732.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553732.1"" | genecode_v17"	chr14	 76437267	 76437846	+	ENSG00000258876.1	ENST00000553732.1	RP11-270M14.5	RP11-270M14.5-001	TGFB3	"hg19_refFlat_TGFB3:range=chr14:76425530-764472365'pad=0,hg19_refFlat_TGFB3:range=chr14:76425530-764472365'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90chr14:76427267-76447930"	NA	inner
CUST_30993_PI429285431	0.88399744	A	0.89829135	A	0.990141136972916	0	lncRNA	32781-1_{1..639}	n337156|AF399571|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383985|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383985|4.7269600|-0.1517573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337156|AF399571|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383985|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383985|4.7269600|-0.1517573	chr14	 20336462	 20337100	-	NA	NA	NA	NA	OR4K2	NA	chr14:20326462-20345371	inter
LNCA_21_P0001235	0.9073361	A	0.92340255	A	0.988925365795325	0	lncRNA	ENST00000433734	NA	NA	NA	NA	XLOC_001243	NA	ENST00000433734	THC2658281	NA	"BROAD Institute lincRNA (XLOC_001243), lincRNA [TCONS_00000749]"	chr1:229228621-229228562	hs|1q42.13	Agilent_HUMAN_G3V2	ENST00000433734	ENST00000433734	chr1	229228562	229228621	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28714_PI429285431	3.6977355	P	3.496614	P	1.14959165955845	0	lncRNA	30414-1_{1..313}	n326104|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046493|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046493|-0.4594020|-0.0989539	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326104|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046493|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046493|-0.4594020|-0.0989539	chr10	  3800106	  3800418	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40764_PI429285431	0.9237206	A	0.91942453	A	1.00298224688479	0	lncRNA	41487-1_{1..3000}	n410481|NR_037625_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_6||-0.7541790|-0.2664380	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410481|NR_037625_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_6||-0.7541790|-0.2664380	chr6	  4395891	  4398890	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45472_PI429285431	0.8895935	A	0.9031812	A	0.99062593710316	0	lncRNA	49887-1_{1..1761}	"gi|210147596|ref|NR_024341.1| Homo sapiens uncharacterized LOC643210 (FLJ40292), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|210147596|ref|NR_024341.1| Homo sapiens uncharacterized LOC643210 (FLJ40292), non-coding RNA"	Chr9	140657474	140659234	+	643210	NR_024341.1	NA	NA	NA	NA	NA	inter
CUST_36088_PI429285431	0.91100144	A	0.90090626	A	1.00702198488053	0	lncRNA	37390-1_{1..2295}	n344675|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_224|NULL|-1.3715000|-0.2061655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344675|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_224|NULL|-1.3715000|-0.2061655	chr8	  9757530	  9759824	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7194_PI429285431	1.262763	A	1.4527583	A	0.876608577119573	0	lncRNA	7522-1_{1..280}	"transcript_id ""ENST00000517211.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517211.1"" | genecode_v17"	chr3	174349613	174349892	+	ENSG00000253020.1	ENST00000517211.1	RN7SKP40	RN7SKP40-201	NA	NA	NA	inter
CUST_91_PI429285431	1.7215266	A	2.7818966	A	0.479509066859299	0	lncRNA	83-2_{3001..3312}	"transcript_id ""ENST00000536898.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000536898.1"" | genecode_v17"	chr19	 35899509	 35899820	+	ENSG00000205786.4	ENST00000536898.1	AC002511.1	AC002511.1-002	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
LNCA_21_P0013208	0.90271676	A	0.920501	A	0.987748571592284	0	lncRNA	TCONS_l2_00025923	NA	NA	NA	NA	XLOC_l2_013436	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013436), lincRNA [TCONS_l2_00025923]"	chr7:63374814-63374873	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025923	TCONS_l2_00025923	chr7	 63374814	 63374873	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36089_PI429285431	2.504909	A	2.7313876	A	0.854718586305723	0	lncRNA	37391-1_{1..1043}	n344676|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_225|NULL|-1.2765400|-0.3540006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344676|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_225|NULL|-1.2765400|-0.3540006	chr3	185000753	185001795	-	NA	NA	NA	NA	MAP3K13	"hg19_refFlat_MAP3K13:range=chr3:185003394-1852002445'pad=0,hg19_refFlat_MAP3K13:range=chr3:185003394-1852002445'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10chr3:185000729-185020864"	NA	inner
CUST_43741_PI429285431	6.2536125	P	6.1953974	P	1.0411768213684	0	lncRNA	48483-1_{1..1419}	"gi|410170422|ref|XR_171114.1| PREDICTED: Homo sapiens uncharacterized LOC101060022 (LOC101060022), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170422|ref|XR_171114.1| PREDICTED: Homo sapiens uncharacterized LOC101060022 (LOC101060022), misc_RNA"	NA	NA	NA	NA	NA	XR_171114.1	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00315603	5.182387	P	5.2383895	P	0.961925787772961	0	lncRNA	TCONS_l2_00030536	NA	NA	NA	NA	XLOC_l2_015760	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015760), lincRNA [TCONS_l2_00030536]"	chrX:73498186-73498127	hs|Xq13.2	Agilent_HUMAN_G3V2	TCONS_l2_00030536	TCONS_l2_00030536	chrX	 73498127	 73498186	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29483_PI429285431	3.4501863	P	4.5642343	P	0.461995914871743	0	lncRNA	31241-1_{1..591}	n332905|AF086290|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067169|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067169|2.6536600|-0.1193770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332905|AF086290|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067169|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067169|2.6536600|-0.1193770	chr11	 58949598	 58950188	+	NA	NA	NA	NA	DTX4	NA	chr11:58939812-58966828	inner
CUST_1222_PI429285431	3.2923453	P	3.0540395	A	1.17960660037837	0	lncRNA	1213-1_{1..551}	"transcript_id ""ENST00000454444.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454444.1"" | genecode_v17"	chr2	208091673	208092223	+	ENSG00000225916.1	ENST00000454444.1	AC007879.4	AC007879.4-001	NA	NA	NA	inter
CUST_7065_PI429285431	0.9091188	A	0.94493985	A	0.975476450842908	0	lncRNA	7010-1_{1..1818}	"transcript_id ""ENST00000603385.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603385.1"" | genecode_v17"	chrX	 53198279	 53200096	+	ENSG00000270189.1	ENST00000603385.1	RP11-258C19.7	RP11-258C19.7-001	NA	NA	NA	inter
LNCA_21_P0007823	9.378158	P	9.630793	P	0.839361967749935	0	lncRNA	TCONS_00021065	NA	NA	NA	NA	XLOC_009663	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009663), lincRNA [TCONS_00021065]"	chr12:10742082-10742141	hs|12p13.2	Agilent_HUMAN_G3V2	TCONS_00021065	TCONS_00021065	chr12	 10742082	 10742141	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49862_PI429285431	6.931471	P	7.570589	P	0.642105383669582	0	lncRNA	53614-1_{1..660}	hg19_lincRNAsTranscripts_TCONS_l2_00026014 range=chr7:75453418-75465507 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026014 range=chr7:75453418-75465507 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 75453418	 75454077	+	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90"	NA	inter
CUST_52119_PI429285431	1.738677	A	3.5023391	A	0.294499665393726	0	lncRNA	55644-1_{1..511}	hg19_lincRNAsTranscripts_TCONS_l2_00017601 range=chr22:20294197-20300571 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017601 range=chr22:20294197-20300571 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 20294197	 20294707	+	NA	NA	NA	NA	DGCR6L	NA	chr22:20301761-20307628	inter
CUST_47590_PI429285431	0.907272	A	1.0877737	A	0.882396087977895	0	lncRNA	51593-1_{1..745}	"gi|284055280|ref|NR_033256.1| Homo sapiens X antigen family, member 1D (XAGE1D), transcript variant c, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|284055280|ref|NR_033256.1| Homo sapiens X antigen family, member 1D (XAGE1D), transcript variant c, non-coding RNA"	ChrX	 52528159	 52528903	-	9503	NR_033256.1	NA	NA	NA	NA	NA	inter
CUST_43514_PI429285431	1.1362886	A	1.3123624	A	0.885108486350125	0	lncRNA	48301-1_{1..3000}	"gi|307574635|ref|NR_036634.1| Homo sapiens transforming growth factor, beta receptor III (TGFBR3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|307574635|ref|NR_036634.1| Homo sapiens transforming growth factor, beta receptor III (TGFBR3), transcript variant 4, non-coding RNA"	Chr1	 92145900	 92148899	-	7049	NR_036634.1	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	inter
CUST_491_PI429285431	1.0482792	A	0.94019973	A	1.07779251296937	0	lncRNA	482-1_{1..546}	"transcript_id ""ENST00000458070.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458070.1"" | genecode_v17"	chr1	177362815	177363360	-	ENSG00000227579.1	ENST00000458070.1	RP1-35C21.2	RP1-35C21.2-002	NA	NA	NA	inter
CUST_43974_PI429285431	6.175282	P	6.702731	P	0.693780405427146	0	lncRNA	48676-1_{1..3000}	"gi|223941905|ref|NR_026922.1| Homo sapiens sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene (LOC150776), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223941905|ref|NR_026922.1| Homo sapiens sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene (LOC150776), non-coding RNA"	Chr2	132250386	132253385	+	150776	NR_026922.1	NA	NA	NA	NA	NA	inter
CUST_50327_PI429285431	4.629986	P	4.958942	P	0.796112378622757	0	lncRNA	54045-1_{1..627}	hg19_lincRNAsTranscripts_TCONS_l2_00029051 range=chr9:132044756-132074813 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029051 range=chr9:132044756-132074813 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132044756	132045382	+	NA	NA	NA	NA	C9orf106	NA	chr9:132083295-132084813	inter
CUST_37098_PI429285431	1.2576765	A	2.3540297	A	0.467697233456245	0	lncRNA	38223-1_{1..1327}	n345541|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1090|NULL|-1.4090600|-0.2432356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345541|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1090|NULL|-1.4090600|-0.2432356	chr2	129097244	129098570	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15721_PI429285431	0.8805475	A	1.0873058	A	0.866482009154812	0	lncRNA	17405-3_{6001..6858}	lnc-BTBD10-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTBD10-3:8	chr11	 13017003	 13017860	-	lnc-BTBD10-3	lnc-BTBD10-3:8	XLOC_009378	linc-DKK3-3	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30"	NA	inter
LNCA_21_P0009361	3.0408177	P	4.27877	P	0.423973999988295	0	lncRNA	TCONS_00025761	NA	NA	NA	NA	XLOC_012571	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012571), lincRNA [TCONS_00025761]"	chr17:71943124-71943065	hs|17q25.1	Agilent_HUMAN_G3V2	TCONS_00025761	TCONS_00025761	chr17	 71943065	 71943124	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37765_PI429285431	1.1602365	A	1.5104281	A	0.784479906555445	0	lncRNA	38862-1_{1..901}	n346273|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1823|NULL|-1.3302900|-0.1979557	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346273|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1823|NULL|-1.3302900|-0.1979557	chr22	 22008049	 22008949	+	NA	NA	NA	NA	SDF2L1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00chr22:21998049-21998588"	NA	inter
CUST_6421_PI429285431	1.0308168	A	1.146934	A	0.922667535005442	0	lncRNA	6360-1_{1..503}	"transcript_id ""ENST00000591926.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591926.1"" | genecode_v17"	chr19	 28862682	 28863184	-	ENSG00000267320.1	ENST00000591926.1	AC005780.1	AC005780.1-002	NA	NA	NA	inter
CUST_39226_PI429285431	0.8920428	A	0.9055025	A	0.990713832147889	0	lncRNA	40199-1_{1..1926}	n386048|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zyj.1||3.0996900|-0.2166653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n386048|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zyj.1||3.0996900|-0.2166653	chr12	126927026	126928951	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22708_PI429285431	0.88476765	A	0.8858147	A	0.999274503544505	0	lncRNA	24292-1_{1..1170}	lnc-GREB1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-GREB1-1:2	chr2	 11822317	 11823486	+	lnc-GREB1-1	lnc-GREB1-1:2	ENSG00000228496.1	AC106875.1	NA	NA	NA	inner
LNCA_21_P0007614	0.8821832	A	2.5784302	A	0.308587814697363	0	lncRNA	TCONS_00020541	NA	NA	NA	NA	XLOC_009856	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009856), lincRNA [TCONS_00020541]"	chr12:103344618-103345223	hs|12q23.2	Agilent_HUMAN_G3V2	TCONS_00020541	TCONS_00020541	chr12	103344618	103345223	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2934_PI429285431	5.1230464	P	5.70802	P	0.666661537730505	0	lncRNA	2915-1_{1..1998}	"transcript_id ""ENST00000605249.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605249.1"" | genecode_v17"	chr7	130614968	130616965	-	ENSG00000271204.1	ENST00000605249.1	RP11-138A9.1	RP11-138A9.1-001	NA	NA	NA	inter
CUST_14023_PI429285431	0.8964277	A	0.9270689	A	0.978985094899802	0	lncRNA	15672-1_{1..519}	lnc-ID4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ID4-1:1	chr6	 19809414	 19809932	+	lnc-ID4-1	lnc-ID4-1:1	XLOC_005193	linc-ID4-1	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40"	NA	inter
CUST_30438_PI429285431	9.061216	P	9.443699	P	0.767116182110489	0	lncRNA	32218-1_{1..250}	n335574|CR542133|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000269002|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000269002|1.0056900|-0.1143807	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335574|CR542133|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000269002|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000269002|1.0056900|-0.1143807	chr22	 18898437	 18898686	+	NA	NA	NA	NA	PRODH	NA	chr22:18900287-18909199	inner
LNCA_21_P0009926	12.699268	P	12.905107	P	0.867034316281019	0	lncRNA	TCONS_00028091	NA	NA	NA	NA	XLOC_013436	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013436), lincRNA [TCONS_00028091]"	chr20:2181178-2181237	hs|20p13	Agilent_HUMAN_G3V2	TCONS_00028091	TCONS_00028091	chr20	  2181178	  2181237	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51334_PI429285431	0.88548845	A	0.88489074	A	1.00041438683581	0	lncRNA	54935-4_{9001..12000}	hg19_lincRNAsTranscripts_TCONS_l2_00009133 range=chr15:62488223-62516293 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009133 range=chr15:62488223-62516293 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 62497223	 62500222	-	NA	NA	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0,hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70"	NA	inter
CUST_7509_PI429285431	9.002268	P	8.585512	P	1.33492251154547	0	lncRNA	9150-1_{1..3000}	lnc-ZNF101-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF101-1:1	chr19	 19855104	 19858103	+	lnc-ZNF101-1	lnc-ZNF101-1:1	ENSG00000249155	ENST00000507121	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	inter
CUST_23114_PI429285431	0.8851805	A	1.1572512	A	0.828130077406936	0	lncRNA	24685-1_{1..1951}	lnc-TSPO-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TSPO-3:1	chr22	 43677943	 43679893	+	lnc-TSPO-3	lnc-TSPO-3:1	ENSG00000203527.2	Z99756.1	SCUBE1	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00chr22:43667943-43689836"	NA	inner
CUST_3240_PI429285431	4.261805	P	4.1219563	P	1.10178956165519	0	lncRNA	3219-1_{1..552}	"transcript_id ""ENST00000522767.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522767.1"" | genecode_v17"	chr8	 97384320	 97384871	-	ENSG00000253105.1	ENST00000522767.1	KB-1448A5.1	KB-1448A5.1-001	NA	NA	NA	inter
LNCA_19_P00317597	6.3573513	P	6.642776	P	0.820500034776749	0	lncRNA	AK309717	NA	AK309717	NA	Hs.639087	XLOC_012826	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012826), lincRNA [TCONS_00026204]"	chr18:37421708-37421649	hs|18q12.3	Agilent_HUMAN_G3V2	AK309717	AK309717	chr18	 37421649	 37421708	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38060_PI429285431	5.6473446	P	5.789606	P	0.906097748744441	0	lncRNA	39138-1_{1..1421}	n377633|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030031||-0.2463400|-0.2760141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377633|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030031||-0.2463400|-0.2760141	chr4	    73408	    74828	-	NA	NA	NA	NA	ZNF595	NA	chr4:63408-88099	inner
CUST_49008_PI429285431	6.37077	P	6.66191	P	0.817256017621541	0	lncRNA	52838-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00019116 range=chr3:197360474-197372879 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019116 range=chr3:197360474-197372879 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	197363474	197366473	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29834_PI429285431	4.836706	P	5.019719	P	0.88086143672514	0	lncRNA	31597-1_{1..275}	n333675|D87946|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000101989|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000101989|1.1669500|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333675|D87946|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000101989|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000101989|1.1669500|-1.0000000	chr19	 49141328	 49141602	+	NA	NA	NA	NA	NTN5	NA	chr19:49164664-49176264	inter
LNCA_21_P0008457	0.8795248	A	0.88050807	A	0.999318681374781	0	lncRNA	TCONS_00022786	NA	NA	NA	NA	XLOC_011064	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011064), lincRNA [TCONS_00022786]"	chr14:71777509-71777450	hs|14q24.2	Agilent_HUMAN_G3V2	TCONS_00022786	TCONS_00022786	chr14	 71777450	 71777509	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50194_PI429285431	0.8755423	A	0.87793356	A	0.99834387775944	0	lncRNA	53919-1_{1..878}	hg19_lincRNAsTranscripts_TCONS_l2_00028738 range=chr9:40308216-40322860 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028738 range=chr9:40308216-40322860 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 40308216	 40309093	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4055_PI429285431	1.281452	A	0.9002284	A	1.30244603705481	0	lncRNA	4017-1_{1..644}	"transcript_id ""ENST00000544019.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544019.1"" | genecode_v17"	chr11	 94375073	 94375716	+	ENSG00000255666.1	ENST00000544019.1	RP11-867G2.6	RP11-867G2.6-002	NA	NA	NA	inter
CUST_10545_PI429285431	5.066648	P	4.875148	P	1.14195040840597	0	lncRNA	12073-1_{1..465}	lnc-ABI3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABI3-1:1	chr17	 47316409	 47316873	+	lnc-ABI3-1	lnc-ABI3-1:1	XLOC_012229	linc-NGFR-4	PHOSPHO1	NA	chr17:47306409-47308128	inter
CUST_38718_PI429285431	8.782815	P	8.966542	P	0.880425600015744	0	lncRNA	39712-1_{1..1168}	n384192|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bij.2||-0.6162560|-0.2338230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384192|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bij.2||-0.6162560|-0.2338230	chr22	 48027451	 48028618	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36197_PI429285431	9.609562	P	9.627869	P	0.987390726109107	0	lncRNA	37457-1_{1..3000}	n344746|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_295|NULL|-1.3309400|-0.3187599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344746|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_295|NULL|-1.3309400|-0.3187599	chr18	 46521878	 46524877	-	NA	NA	NA	NA	DYM	NA	chr18:46570172-46576620	inter
CUST_473_PI429285431	1.1523694	A	0.8783219	A	1.209195487324	0	lncRNA	464-1_{1..562}	"transcript_id ""ENST00000414590.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414590.1"" | genecode_v17"	chr1	166864948	166865509	-	ENSG00000237096.1	ENST00000414590.1	RP4-782G3.1	RP4-782G3.1-001	ILDR2	NA	chr1:166882441-166887317	inter
CUST_31120_PI429285431	10.008188	P	8.79674	P	2.31569941633531	0	lncRNA	32915-1_{1..212}	n337416|DQ786322|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393375_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393375_06|-1.4102200|-0.4726745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337416|DQ786322|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393375_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393375_06|-1.4102200|-0.4726745	chr7	 74601089	 74601300	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011649	1.9702241	A	0.88474494	A	2.12208016880441	0	lncRNA	THC2690732	NA	NA	NA	NA	XLOC_l2_006322	NA	NA	THC2690732	NA	"BROAD Institute lincRNA (XLOC_l2_006322), lincRNA [TCONS_l2_00011858]"	chr18:056735646-056735705	hs|18q21.32	Agilent_HUMAN_G3V2	THC2690732	THC2690732	chr18	 56735646	 56735705	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006345	4.3974805	P	4.394043	P	1.00238553430303	0	lncRNA	TCONS_00016551	NA	NA	NA	NA	XLOC_007314	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007314), lincRNA [TCONS_00016551]"	chr9:32739213-32743394	hs|9p21.1	Agilent_HUMAN_G3V2	TCONS_00016551	TCONS_00016551	chr9	 32739213	 32743394	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005345	0.8837889	A	0.88525325	A	0.998985504874631	0	lncRNA	TCONS_00014043	NA	NA	NA	NA	XLOC_005955	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005955), lincRNA [TCONS_00014043]"	chr7:391200-391259	hs|7p22.3	Agilent_HUMAN_G3V2	TCONS_00014043	TCONS_00014043	chr7	   391200	   391259	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3376031	0.8839383	A	0.88566786	A	0.99880187868355	0	lncRNA	ENST00000382225	XR_109245	XR_109245	NA	Hs.666223	NA	NA	ENST00000382225	THC2483708	NA	"PREDICTED: Homo sapiens hypothetical LOC100128770 (LOC100128770), miscRNA [XR_109245]"	chr16:3089072-3089131	hs|16p13.3	Agilent_HUMAN_G3V2	ENST00000382225	ENST00000382225	chr16	  3089072	  3089131	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11996_PI429285431	0.8917385	A	0.9053649	A	0.990599364121006	0	lncRNA	13577-1_{1..619}	lnc-TCF7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF7-1:1	chr5	133305442	133306060	+	lnc-TCF7-1	lnc-TCF7-1:1	XLOC_004556	linc-TCF7-1	C5orf15	NA	chr5:133295442-133304406	inter
CUST_47274_PI429285431	5.4200644	P	5.2530546	P	1.12272904856916	0	lncRNA	51344-2_{3001..3356}	"gi|299829257|ref|NR_033905.1| Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 35 (DHX35), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299829257|ref|NR_033905.1| Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 35 (DHX35), transcript variant 3, non-coding RNA"	Chr20	 37593981	 37594336	+	60625	NR_033905.1	NA	NA	NA	NA	NA	inter
CUST_46796_PI429285431	6.3650045	P	5.4447465	P	1.89245369441903	0	lncRNA	50941-1_{1..2746}	"gi|401829644|ref|NR_073118.1| Homo sapiens cytokine receptor-like factor 3 (CRLF3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|401829644|ref|NR_073118.1| Homo sapiens cytokine receptor-like factor 3 (CRLF3), transcript variant 2, non-coding RNA"	Chr17	 29109702	 29112447	-	51379	NR_073118.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.30"	NA	inter
CUST_39805_PI429285431	1.6149342	A	0.9110831	A	1.62884700479215	0	lncRNA	40714-1_{1..652}	n406215|NR_003673|lncRNA|Homosapiens||RefGeneNoncode|NR_003673||-1.1943500|-0.3936164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406215|NR_003673|lncRNA|Homosapiens||RefGeneNoncode|NR_003673||-1.1943500|-0.3936164	chr6	  2965687	  2966338	-	NA	NA	NA	NA	SERPINB6	NA	chr6:2955687-2972399	inner
CUST_15936_PI429285431	2.5123916	A	3.5628395	A	0.482818245138822	0	lncRNA	17633-1_{1..215}	lnc-HAAO-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HAAO-1:2	chr2	 43037761	 43037975	-	lnc-HAAO-1	lnc-HAAO-1:2	XLOC_002066	linc-HAAO-3	NA	NA	NA	inter
CUST_4368_PI429285431	3.3769693	A	3.0237427	A	1.27741438327723	0	lncRNA	4322-1_{1..574}	"transcript_id ""ENST00000549313.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549313.1"" | genecode_v17"	chr12	 90674671	 90675244	+	ENSG00000258183.1	ENST00000549313.1	RP11-753N8.1	RP11-753N8.1-003	NA	NA	NA	inter
CUST_15894_PI429285431	0.89833933	A	0.9084398	A	0.993023338389951	0	lncRNA	17586-1_{1..510}	lnc-TMEM99-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM99-1:1	chr17	 38965401	 38965910	+	lnc-TMEM99-1	lnc-TMEM99-1:1	XLOC_012200	linc-TMEM99-1	KRT10	NA	chr17:38974369-38975769	inter
CUST_49207_PI429285431	0.8964745	A	0.9089736	A	0.991373705913569	0	lncRNA	53026-1_{1..1602}	hg19_lincRNAsTranscripts_TCONS_l2_00020875 range=chr4:171901074-171916283 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020875 range=chr4:171901074-171916283 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	171901074	171902675	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14598_PI429285431	2.0435257	A	2.205236	A	0.89396465667338	0	lncRNA	16265-1_{1..2368}	lnc-IGFL1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGFL1-1:5	chr19	 46717054	 46719421	+	lnc-IGFL1-1	lnc-IGFL1-1:5	XLOC_013100	linc-IGFL1-1	IGFL1	NA	chr19:46722592-46728714	inter
CUST_32260_PI429285431	1.7086604	A	0.8891163	A	1.76484820218612	0	lncRNA	33949-2_{3001..3188}	n338835|AL833464|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1258|NULL|-1.1410700|-0.3350823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338835|AL833464|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1258|NULL|-1.1410700|-0.3350823	chr12	   386122	   386309	-	NA	NA	NA	NA	KDM5A	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.62;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90chr12:389223-396289"	NA	inter
CUST_28890_PI429285431	2.2623663	A	1.7376627	A	1.43863798316459	0	lncRNA	30606-1_{1..541}	n326313|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000085147|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000085147|-1.1842300|-0.2403605	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326313|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000085147|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000085147|-1.1842300|-0.2403605	chr1	179411095	179411635	+	NA	NA	NA	NA	AXDND1	NA	chr1:179401095-179427966	inner
CUST_43571_PI429285431	8.601178	P	8.008314	P	1.50823789139041	0	lncRNA	48345-1_{1..3000}	"gi|410170851|ref|XR_110613.3| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170851|ref|XR_110613.3| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	XR_110613.3	NA	NA	NA	NA	NA	Unknown
CUST_50426_PI429285431	11.31728	P	11.334932	P	0.987839114537268	0	lncRNA	54130-1_{1..287}	hg19_lincRNAsTranscripts_TCONS_l2_00030169 range=chrX:27882114-27882507 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030169 range=chrX:27882114-27882507 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 27882114	 27882400	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11026_PI429285431	0.91565734	A	0.91152567	A	1.00286796016295	0	lncRNA	12572-1_{1..967}	lnc-CTD-2014B16.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2014B16.3.1-1:1	chr14	 66926483	 66927449	-	lnc-CTD-2014B16.3.1-1	lnc-CTD-2014B16.3.1-1:1	XLOC_011056	linc-MAX-2	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60"	NA	inter
CUST_23999_PI429285431	0.9092465	A	0.9089041	A	1.00023736176047	0	lncRNA	25553-1_{1..1109}	lnc-NOD2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NOD2-1:3	chr16	 50705059	 50706167	+	lnc-NOD2-1	lnc-NOD2-1:3	ENSG00000260249.2	RP11-401P9.5	SNX20	"hg19_refFlat_SNX20:range=chr16:50702952-507114375'pad=0,hg19_refFlat_SNX20:range=chr16:50702952-507114375'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30chr16:50700211-50715264"	NA	inner
CUST_33831_PI429285431	2.4734735	A	2.220038	A	1.19204235684623	0	lncRNA	35379-1_{1..457}	n340617|AF420439|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3079|NULL|-0.9495120|-0.2753673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340617|AF420439|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3079|NULL|-0.9495120|-0.2753673	chr17	 32015863	 32016319	+	NA	NA	NA	NA	ACCN1	NA	chr17:32005863-32026192	inner
CUST_18779_PI429285431	5.393093	P	5.480822	P	0.941002851604524	0	lncRNA	20475-1_{1..912}	lnc-LRRC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LRRC3-1:1	chr21	 45909914	 45910825	+	lnc-LRRC3-1	lnc-LRRC3-1:1	ENSG00000228709	AP001065.15	TSPEAR	NA	chr21:45917775-45920171	inter
CUST_20297_PI429285431	0.9108742	A	0.9091127	A	1.00122172445658	0	lncRNA	21941-1_{1..564}	lnc-OSBPL1A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OSBPL1A-3:1	chr18	 21679187	 21679750	-	lnc-OSBPL1A-3	lnc-OSBPL1A-3:1	ENSG00000265204.1	RP11-403A21.3	TTC39C	NA	chr18:21669187-21689284	inner
CUST_2588_PI429285431	1.0465218	A	1.9853919	A	0.521641263135263	0	lncRNA	2576-1_{1..226}	"transcript_id ""ENST00000439279.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439279.1"" | genecode_v17"	chr6	 98723022	 98723247	+	ENSG00000225994.1	ENST00000439279.1	RP11-436D23.1	RP11-436D23.1-001	NA	NA	NA	inter
LNCA_21_P0005422	3.2203066	P	3.7200792	P	0.707218245321811	0	lncRNA	TCONS_00013573	NA	NA	NA	NA	XLOC_006226	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006226), lincRNA [TCONS_00013573]"	chr7:123561109-123561168	hs|7q31.32	Agilent_HUMAN_G3V2	TCONS_00013573	TCONS_00013573	chr7	123561109	123561168	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17548_PI429285431	10.555252	P	10.086178	P	1.38422071491335	0	lncRNA	19274-1_{1..434}	lnc-ADAMTS9-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAMTS9-3:2	chr3	 64961778	 64962211	-	lnc-ADAMTS9-3	lnc-ADAMTS9-3:2	XLOC_003149	linc-ADAMTS9-2	NA	NA	NA	inter
CUST_28019_PI429285431	0.90340424	A	0.9033524	A	1.00003593339543	0	lncRNA	29629-1_{1..218}	n325275|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328222|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328222|-1.1269500|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325275|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328222|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328222|-1.1269500|-1.0000000	chr2	 66777793	 66778010	-	NA	NA	NA	NA	MEIS1	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50chr2:66767793-66793833"	NA	inner
CUST_13453_PI429285431	2.9588673	A	2.819115	A	1.10171594321034	0	lncRNA	15091-1_{1..826}	lnc-DRD5-10:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DRD5-10:12	chr4	 11791382	 11792207	+	lnc-DRD5-10	lnc-DRD5-10:12	XLOC_003457	linc-CPEB2-10	NA	NA	NA	inter
CUST_26494_PI429285431	1.2101555	A	2.552909	A	0.394267446116837	0	lncRNA	28003-1_{1..720}	lnc-GJA4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GJA4-1:1	chr1	 35316893	 35317612	+	lnc-GJA4-1	lnc-GJA4-1:1	ENSG00000230163.1	RP5-997D16.2	C1orf212	NA	chr1:35315963-35325417	inner
CUST_11562_PI429285431	3.4646268	P	3.7245564	P	0.835128670676758	0	lncRNA	13139-1_{1..550}	lnc-RASGRP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASGRP1-1:2	chr15	 39049397	 39049946	-	lnc-RASGRP1-1	lnc-RASGRP1-1:2	XLOC_011433	linc-RASGRP1-1	NA	NA	NA	inter
CUST_8316_PI429285431	0.9002723	A	0.89861786	A	1.00114742821403	0	lncRNA	9901-1_{1..1387}	lnc-RTN4IP1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RTN4IP1-2:5	chr6	107235134	107236520	-	lnc-RTN4IP1-2	lnc-RTN4IP1-2:5	ENSG00000235142	RP1-60O19.1	NA	NA	NA	inter
CUST_28387_PI429285431	1.3159926	A	0.9122125	A	1.32296977343142	0	lncRNA	30039-1_{1..611}	n325702|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045216|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045216|-0.8475220|-0.2814910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325702|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045216|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045216|-0.8475220|-0.2814910	chr13	 66844519	 66845129	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20085_PI429285431	0.88939434	A	0.89403754	A	0.996786752576329	0	lncRNA	21733-1_{1..497}	lnc-ZNF862-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:14	chr7	149524858	149525354	+	lnc-ZNF862-1	lnc-ZNF862-1:14	ENSG00000197558.7	SSPO	SSPO	NA	chr7:149514858-149531054	inner
CUST_44776_PI429285431	7.466652	P	7.257761	P	1.15579937909609	0	lncRNA	49315-1_{1..3000}	"gi|397139141|ref|XR_158809.1| PREDICTED: Homo sapiens uncharacterized LOC100996497 (LOC100996497), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139141|ref|XR_158809.1| PREDICTED: Homo sapiens uncharacterized LOC100996497 (LOC100996497), misc_RNA"	NA	NA	NA	NA	NA	XR_158809.1	NA	NA	NA	NA	NA	Unknown
CUST_10323_PI429285431	3.0271778	P	2.8237393	P	1.15143941244342	0	lncRNA	11851-1_{1..534}	lnc-PPARGC1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPARGC1A-1:1	chr4	 23735113	 23735646	-	lnc-PPARGC1A-1	lnc-PPARGC1A-1:1	XLOC_003907	linc-GPR125-2	NA	NA	NA	inter
CUST_27070_PI429285431	1.9389883	A	2.7551272	A	0.56795994763164	0	lncRNA	28602-1_{1..432}	n324179|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322680|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322680|-0.7924000|-0.1961630	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324179|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322680|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322680|-0.7924000|-0.1961630	chr7	155917977	155918408	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7590_PI429285431	1.0401018	A	1.0734005	A	0.977183426415427	0	lncRNA	9225-1_{1..596}	lnc-FBXO8-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXO8-4:2	chr4	175041570	175042165	-	lnc-FBXO8-4	lnc-FBXO8-4:2	ENSG00000248174	RP11-148L24.1	NA	NA	NA	inter
CUST_28152_PI429285431	5.528383	P	5.9097958	P	0.767685444698609	0	lncRNA	29777-1_{1..578}	n325428|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323598|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323598|-1.1882900|-0.2767269	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325428|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323598|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323598|-1.1882900|-0.2767269	chr2	 12371893	 12372470	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-24.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20"	NA	inter
CUST_31440_PI429285431	5.7843647	P	4.9705253	P	1.75788342433785	0	lncRNA	33209-1_{1..1265}	n337908|CR616033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|291|NULL|-1.2358500|-0.3889818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337908|CR616033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|291|NULL|-1.2358500|-0.3889818	chr1	 46162729	 46163993	-	NA	NA	NA	NA	IPP	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20chr1:46159996-46175067"	NA	inner
CUST_22727_PI429285431	5.1973076	P	3.5434494	P	3.14674047853568	0	lncRNA	24311-1_{1..1589}	lnc-LRRD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRD1-1:1	chr7	 91835012	 91836600	-	lnc-LRRD1-1	lnc-LRRD1-1:1	ENSG00000243107.1	AC000120.7	KRIT1	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80chr7:91828283-91846171"	NA	inner
CUST_14239_PI429285431	0.9020234	A	1.0850532	A	0.880851179265626	0	lncRNA	15897-1_{1..953}	lnc-ZFP62-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP62-1:1	chr5	180262054	180263006	-	lnc-ZFP62-1	lnc-ZFP62-1:1	XLOC_005111	linc-MGAT1-1	NA	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-53.20"	NA	inter
CUST_6752_PI429285431	4.8459044	P	5.3591146	P	0.700661631027583	0	lncRNA	6700-1_{1..542}	"transcript_id ""ENST00000423020.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423020.1"" | genecode_v17"	chr20	 61798149	 61798690	-	ENSG00000231977.1	ENST00000423020.1	RP5-963E22.4	RP5-963E22.4-001	NA	NA	NA	inter
CUST_28930_PI429285431	6.5316496	P	6.819733	P	0.818989351965981	0	lncRNA	30648-1_{1..462}	n326356|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000102153|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000102153|-1.0459300|-0.2163884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326356|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000102153|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000102153|-1.0459300|-0.2163884	chr1	159792703	159793164	-	NA	NA	NA	NA	FCRL6	NA	chr1:159782703-159786047	inter
LNCA_21_P0003150	0.8800121	A	0.88462573	A	0.996807183287953	0	lncRNA	TCONS_00006585	NA	NA	NA	NA	XLOC_003202	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003202), lincRNA [TCONS_00006585]"	chr3:106536914-106536855	hs|3q13.12	Agilent_HUMAN_G3V2	TCONS_00006585	TCONS_00006585	chr3	106536855	106536914	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008190	0.87964064	A	0.8837821	A	0.997133475028601	0	lncRNA	TCONS_00022070	NA	NA	NA	NA	XLOC_010674	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010674), lincRNA [TCONS_00022070]"	chr13:84655996-84639046	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00022070	TCONS_00022070	chr13	 84639046	 84655996	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18124_PI429285431	2.7804866	A	3.5741334	P	0.576884017748522	0	lncRNA	19859-1_{1..275}	lnc-UCHL5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UCHL5-1:3	chr1	192924120	192924394	-	lnc-UCHL5-1	lnc-UCHL5-1:3	XLOC_001134	linc-FAM5C-4	NA	NA	NA	inter
CUST_38277_PI429285431	13.032523	P	12.996106	P	1.02556362639767	0	lncRNA	39332-1_{1..1360}	n381883|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001srx.2||1.9390500|-0.1414156	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381883|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001srx.2||1.9390500|-0.1414156	chr12	 64616116	 64617475	+	NA	NA	NA	NA	C12orf56	NA	chr12:64660763-64784345	inner
CUST_37228_PI429285431	0.9083811	A	0.91532284	A	0.995199909922503	0	lncRNA	38338-2_{3001..3188}	n345661|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1210|NULL|-1.3073900|-0.3771628	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345661|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1210|NULL|-1.3073900|-0.3771628	chr5	 18517966	 18518153	-	NA	NA	NA	NA	NA	"hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-27.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_IGSF5:range=chr21:41117437-411732845'pad=0,hg19_refFlat_IGSF5:range=chr21:41117437-411732845'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70"	NA	inter
CUST_3781_PI429285431	1.7345766	A	1.8474703	A	0.924731411242953	0	lncRNA	3749-1_{1..954}	"transcript_id ""ENST00000434792.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434792.1"" | genecode_v17"	chr10	106083127	106084080	+	ENSG00000228261.1	ENST00000434792.1	RP11-127L20.3	RP11-127L20.3-001	ITPRIP	NA	chr10:106073127-106093663	inner
CUST_46799_PI429285431	4.1395617	P	4.504508	P	0.776497777266194	0	lncRNA	50945-1_{1..673}	"gi|410170732|ref|XR_171072.1| PREDICTED: Homo sapiens uncharacterized LOC101060080 (LOC101060080), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170732|ref|XR_171072.1| PREDICTED: Homo sapiens uncharacterized LOC101060080 (LOC101060080), misc_RNA"	NA	NA	NA	NA	NA	XR_171072.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00"	NA	Unknown
LNCA_21_P0007997	0.87885416	A	0.8804996	A	0.998860118062752	0	lncRNA	ENST00000417989	NA	NA	NA	NA	XLOC_010626	NA	ENST00000417989	NA	NA	"BROAD Institute lincRNA (XLOC_010626), lincRNA [TCONS_00021657]"	chr13:53720736-53720677	hs|13q14.3	Agilent_HUMAN_G3V2	ENST00000417989	ENST00000417989	chr13	 53720677	 53720736	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37893_PI429285431	0.8874959	A	2.363157	A	0.359568588678564	0	lncRNA	38983-1_{1..882}	n346429|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1979|NULL|-1.3415200|-0.3748186	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346429|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1979|NULL|-1.3415200|-0.3748186	chr4	 54935107	 54935988	-	NA	NA	NA	NA	CHIC2	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-28.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30chr4:54925107-54930815"	NA	inter
CUST_7665_PI429285431	0.91493964	A	0.9224727	A	0.994792089136038	0	lncRNA	9297-1_{1..2485}	lnc-LIX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIX1-1:1	chr5	 96365384	 96367868	-	lnc-LIX1-1	lnc-LIX1-1:1	ENSG00000249716	ENST00000507263	LNPEP	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10chr5:96355384-96365115"	NA	inter
CUST_17083_PI429285431	0.9118322	A	0.8916995	A	1.01405274871205	0	lncRNA	18791-1_{1..953}	lnc-LHFP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LHFP-1:2	chr13	 39910408	 39911360	-	lnc-LHFP-1	lnc-LHFP-1:2	XLOC_010576	linc-C13orf23-1	LHFP	NA	chr13:39917029-39921240	inter
LNCA_21_P0008836	1.8871055	A	0.8805475	A	2.0091120127825	0	lncRNA	CU676033	NA	CU676033	NA	NA	XLOC_011339	NA	NA	THC2484476	NA	"BROAD Institute lincRNA (XLOC_011339), lincRNA [TCONS_00023996]"	chr15:76182776-76175707	hs|15q24.2	Agilent_HUMAN_G3V2	CU676033	CU676033	chr15	 76175707	 76182776	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48900_PI429285431	1.3026202	A	0.88662356	A	1.33422006230961	0	lncRNA	52740-1_{1..2226}	hg19_lincRNAsTranscripts_TCONS_l2_00018730 range=chr3:107180193-107183600 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018730 range=chr3:107180193-107183600 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	107180193	107182418	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23144_PI429285431	4.8141775	P	4.7538686	P	1.04268899038095	0	lncRNA	24715-1_{1..1963}	lnc-SPATA17-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPATA17-2:1	chr1	217666117	217668079	+	lnc-SPATA17-2	lnc-SPATA17-2:1	ENSG00000229841.1	RP11-361K17.2	GPATCH2	NA	chr1:217656117-217677625	inner
CUST_37168_PI429285431	9.97263	P	9.979898	P	0.994974874691891	0	lncRNA	38285-1_{1..3000}	n345604|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1153|NULL|-1.3319200|-0.3722150	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345604|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1153|NULL|-1.3319200|-0.3722150	chr3	160212795	160215794	-	NA	NA	NA	NA	KPNA4	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90chr3:160212783-160227772"	NA	inner
LNCA_21_P0001386	0.88120717	A	0.8818926	A	0.999525008972002	0	lncRNA	TCONS_00001200	NA	NA	NA	NA	XLOC_000462	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000462), lincRNA [TCONS_00001200]"	chr1:171593182-171593241	hs|1q24.3	Agilent_HUMAN_G3V2	TCONS_00001200	TCONS_00001200	chr1	171593182	171593241	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009436	0.88190544	A	0.8826395	A	0.999491317803319	0	lncRNA	TCONS_00026227	NA	NA	NA	NA	XLOC_012602	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012602), lincRNA [TCONS_00026227]"	chr18:571010-571069	hs|18p11.32	Agilent_HUMAN_G3V2	TCONS_00026227	TCONS_00026227	chr18	   571010	   571069	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30507_PI429285431	9.715928	P	9.015934	P	1.62449803660102	0	lncRNA	32287-1_{1..902}	n335663|CR612957|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000292152|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000292152|-0.3570400|-0.3821928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335663|CR612957|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000292152|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000292152|-0.3570400|-0.3821928	chr3	158541967	158542868	+	NA	NA	NA	NA	MFSD1	NA	chr3:158531967-158547508	inner
CUST_22616_PI429285431	2.2318041	A	1.7039862	A	1.44174687965368	0	lncRNA	24201-1_{1..436}	lnc-ADD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ADD2-1:1	chr2	 70695504	 70695939	-	lnc-ADD2-1	lnc-ADD2-1:1	ENSG00000224606.1	TGFA-IT1	TGFA	NA	chr2:70685504-70705627	inner
CUST_31502_PI429285431	0.8817612	A	0.8836673	A	0.99867966456996	0	lncRNA	33264-2_{3001..3163}	n337983|BC034424|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|369|NULL|-1.2207100|-0.2239178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337983|BC034424|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|369|NULL|-1.2207100|-0.2239178	chr15	 72574207	 72574369	+	NA	NA	NA	NA	HEXA	"hg19_refFlat_HEXA:range=chr15:72636418-726683135'pad=0,hg19_refFlat_HEXA:range=chr15:72636418-726683135'pad=0 3'pad=0 strand=- repeatMasking=none,-98.70chr15:72635778-72654135"	NA	inner
CUST_33253_PI429285431	0.8858174	A	0.8809767	A	1.00336095293596	0	lncRNA	34839-1_{1..1135}	n339957|CR626046|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2410|NULL|-1.1475200|-0.4184112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339957|CR626046|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2410|NULL|-1.1475200|-0.4184112	chr10	 10435919	 10437053	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31523_PI429285431	1.1144261	A	0.88851655	A	1.1695143388619	0	lncRNA	33282-1_{1..3000}	n338011|CR627203|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|398|NULL|-0.1933090|-0.3627204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338011|CR627203|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|398|NULL|-0.1933090|-0.3627204	chr1	 75043113	 75046112	+	NA	NA	NA	NA	C1orf173	NA	chr1:75033795-75101782	inner
LNCA_21_P0004731	1.2741528	A	0.88548845	A	1.30918080038472	0	lncRNA	ENST00000455973	NA	NA	NA	NA	XLOC_005613	NA	ENST00000455973	NA	NA	"BROAD Institute lincRNA (XLOC_005613), lincRNA [TCONS_00011455]"	chr6:14231775-14230390	hs|6p23	Agilent_HUMAN_G3V2	ENST00000455973	ENST00000455973	chr6	 14230390	 14231775	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26704_PI429285431	0.89155066	A	0.8944895	A	0.99796502471541	0	lncRNA	28203-9_{24001..27000}	n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	chr13	 70705309	 70708308	+	NA	NA	NA	NA	KLHL1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0,hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0 3'pad=0 strand=- repeatMasking=none,-105.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr13:70671309-70682625"	NA	inner
CUST_13618_PI429285431	1.3801717	A	2.2963502	A	0.529910823486958	0	lncRNA	15257-1_{1..246}	lnc-EBF1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EBF1-2:1	chr5	157905337	157905582	-	lnc-EBF1-2	lnc-EBF1-2:1	XLOC_005062	linc-CLINT1-2	NA	NA	NA	inter
CUST_39376_PI429285431	2.9816256	A	3.051156	A	0.952948134009734	0	lncRNA	40339-1_{1..984}	n386504|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mnp.1||1.0075600|-0.2103514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386504|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mnp.1||1.0075600|-0.2103514	chr9	 68726484	 68727467	+	NA	NA	NA	NA	LOC100652863	NA	chr9:68726465-68750959	inter
CUST_41543_PI429285431	4.3786845	P	4.793171	P	0.750286497404043	0	lncRNA	42821-1_{1..83}	ENST00000401138 ncrna:miRNA chromosome:GRCh37:14:101507700:101507782:1 gene:ENSG00000215957 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401138 ncrna:miRNA chromosome:GRCh37:14:101507700:101507782:1 gene:ENSG00000215957 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101507700	101507782	+	ENSG00000215957	ENST00000401138	NA	NA	NA	NA	NA	inter
LNCA_21_P0005590	3.9277825	P	4.152321	P	0.855868763551525	0	lncRNA	TCONS_00014242	NA	NA	NA	NA	XLOC_006319	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006319), lincRNA [TCONS_00014242]"	chr7:158743579-158749302	hs|7q36.3	Agilent_HUMAN_G3V2	TCONS_00014242	TCONS_00014242	chr7	158743579	158749302	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31879_PI429285431	0.87540156	A	0.87726086	A	0.998712061552733	0	lncRNA	33612-1_{1..3000}	n338435|AL832767|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|832|NULL|-0.0822992|-0.3332305	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338435|AL832767|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|832|NULL|-0.0822992|-0.3332305	chr14	 88641818	 88644817	+	NA	NA	NA	NA	KCNK10	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70chr14:88646452-88656542"	NA	inner
CUST_25795_PI429285431	0.8970771	A	0.89690316	A	1.00012057328896	0	lncRNA	27316-1_{1..466}	lnc-GPRC5A-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPRC5A-2:5	chr12	 13132934	 13133399	+	lnc-GPRC5A-2	lnc-GPRC5A-2:5	ENSG00000247498.2	RP11-392P7.8	HEBP1	NA	chr12:13127798-13143028	inner
CUST_12222_PI429285431	3.2660382	P	2.7267208	A	1.45328474418966	0	lncRNA	13826-1_{1..1177}	lnc-CAMK2N1-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CAMK2N1-2:8	chr1	 20703874	 20705050	-	lnc-CAMK2N1-2	lnc-CAMK2N1-2:8	XLOC_000730	linc-PLA2G2C-1	NA	NA	NA	inter
CUST_8650_PI429285431	4.976174	P	5.3449974	P	0.774413817885925	0	lncRNA	10202-1_{1..2063}	lnc-EVX1-8:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EVX1-8:5	chr7	 27191913	 27193975	+	lnc-EVX1-8	lnc-EVX1-8:5	ENSG00000254369	RP1-170O19.2	HOXA5	NA	chr7:27181913-27183287	inter
CUST_17719_PI429285431	0.9013137	A	1.0275359	A	0.916227518915851	0	lncRNA	19449-1_{1..283}	lnc-LECT2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LECT2-1:3	chr5	135240958	135241240	-	lnc-LECT2-1	lnc-LECT2-1:3	XLOC_005012	linc-IL9-1	IL9	NA	chr5:135230958-135231516	inter
CUST_40621_PI429285431	7.566882	P	6.0771136	P	2.80843886848662	0	lncRNA	41363-1_{1..3000}	n410104|NR_036535|lncRNA|Homosapiens||RefGeneNoncode|NR_036535||6.5720200|-0.3756361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410104|NR_036535|lncRNA|Homosapiens||RefGeneNoncode|NR_036535||6.5720200|-0.3756361	chr5	138609440	138612439	+	NA	NA	NA	NA	MATR3	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80chr5:138609441-138667366"	NA	inner
CUST_46617_PI429285431	4.858756	P	5.3240094	P	0.724343839819542	0	lncRNA	50794-1_{1..2611}	"gi|338221691|ref|NR_039998.1| Homo sapiens uncharacterized LOC100506655 (LOC100506655), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338221691|ref|NR_039998.1| Homo sapiens uncharacterized LOC100506655 (LOC100506655), non-coding RNA"	Chr16	 25151892	 25154502	-	100506655	NR_039998.1	NA	NA	NA	NA	NA	inter
CUST_26233_PI429285431	4.5321302	P	5.005822	P	0.720119480482827	0	lncRNA	27740-1_{1..1063}	lnc-PLA2G6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLA2G6-1:1	chr22	 38618649	 38619711	-	lnc-PLA2G6-1	lnc-PLA2G6-1:1	ENSG00000251267.1	RP1-5O6.6	TMEM184B	NA	chr22:38615298-38628939	inner
CUST_47852_PI429285431	2.639193	A	3.9742694	P	0.396371077346347	0	lncRNA	51757-1_{1..3000}	"gi|410171088|ref|XR_159185.2| PREDICTED: Homo sapiens c-Jun-amino-terminal kinase-interacting protein 1-like (LOC100996710), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171088|ref|XR_159185.2| PREDICTED: Homo sapiens c-Jun-amino-terminal kinase-interacting protein 1-like (LOC100996710), misc_RNA"	NA	NA	NA	NA	NA	XR_159185.2	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011892	0.90549123	A	0.9279968	A	0.984521372260628	0	lncRNA	ENST00000439601	NA	NA	NA	NA	XLOC_l2_007834	NA	ENST00000439601	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007834), lincRNA [TCONS_l2_00014338]"	chr2:242876134-242876193	hs|2q37.3	Agilent_HUMAN_G3V2	ENST00000439601	ENST00000439601	chr2	242876134	242876193	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009828	0.90563	A	0.92788434	A	0.984692831116811	0	lncRNA	ENST00000421788	NA	NA	NA	NA	XLOC_013461	NA	ENST00000421788	NA	NA	"BROAD Institute lincRNA (XLOC_013461), lincRNA [TCONS_00027903]"	chr20:10847719-10847778	hs|20p12.2	Agilent_HUMAN_G3V2	ENST00000421788	ENST00000421788	chr20	 10847719	 10847778	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30865_PI429285431	0.9251285	A	0.92235196	A	1.00192640400937	0	lncRNA	32653-1_{1..317}	n336862|AY566847|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331939_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331939_06|-1.1112900|-0.3179932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336862|AY566847|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331939_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331939_06|-1.1112900|-0.3179932	chr6	   927953	   928269	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3223632	2.3476763	A	2.7616825	A	0.750536323311009	0	lncRNA	XR_133099	XR_133099	XR_133099	100653259	Hs.633945	LOC100653259	e3 ubiquitin-protein ligase HERC2-like	NA	THC2548215	NA	"PREDICTED: Homo sapiens e3 ubiquitin-protein ligase HERC2-like (LOC100653259), miscRNA [XR_133099]"	chr16:32167911-32167852	hs|16p11.2	Agilent_HUMAN_G3V2	XR_133099	XR_133099	chr16	 32167852	 32167911	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009857	1.0250596	A	0.9242381	A	1.07238392600819	0	lncRNA	ENST00000448013	NA	NA	NA	NA	XLOC_013567	NA	ENST00000448013	NA	NA	"BROAD Institute lincRNA (XLOC_013567), lincRNA [TCONS_00027953]"	chr20:51304634-51304693	hs|20q13.2	Agilent_HUMAN_G3V2	ENST00000448013	ENST00000448013	chr20	 51304634	 51304693	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010125	0.90440595	A	1.4010965	A	0.708730700714573	0	lncRNA	TCONS_00028716	NA	NA	NA	NA	XLOC_013825	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013825), lincRNA [TCONS_00028716]"	chr20:58656628-58656569	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028716	TCONS_00028716	chr20	 58656569	 58656628	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50897_PI429285431	11.147425	P	10.788797	P	1.28220594236817	0	lncRNA	54539-1_{1..629}	hg19_lincRNAsTranscripts_TCONS_l2_00005430 range=chr12:4207356-4208695 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005430 range=chr12:4207356-4208695 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	  4207356	  4207984	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00321383	2.2145348	A	2.5407515	A	0.797625423488782	0	lncRNA	XR_108814	XR_108814	XR_108814	NA	Hs.635013	LOC100506860	NA	NA	THC2545517	NA	"PREDICTED: Homo sapiens hypothetical LOC100506860, transcript variant 2 (LOC100506860), miscRNA [XR_108814]"	chr7:130612595-130612654	hs|7q32.3	Agilent_HUMAN_G3V2	XR_108814	XR_108814	chr7	130612595	130612654	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004920	4.131804	P	3.7760243	P	1.27967699183307	0	lncRNA	TCONS_00011918	NA	NA	NA	NA	XLOC_005426	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005426), lincRNA [TCONS_00011918]"	chr6:111617036-111617095	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00011918	TCONS_00011918	chr6	111617036	111617095	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14277_PI429285431	4.687066	P	5.248872	P	0.677453580175566	0	lncRNA	15935-1_{1..394}	lnc-KCNMB2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNMB2-3:1	chr3	177484471	177484864	+	lnc-KCNMB2-3	lnc-KCNMB2-3:1	XLOC_002932	linc-KCNMB2-3	NA	NA	NA	inter
LNCA_21_P0014926	0.89755225	A	0.9123527	A	0.989793552736817	0	lncRNA	XR_133259	XR_133259	XR_133259	NA	NA	LOC100289308	uncharacterized LOC100289308	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100289308 (LOC100289308), miscRNA [XR_133259]"	chr20:23461530-23461589	hs|20p11.21	Agilent_HUMAN_G3V2	XR_133259	XR_133259	chr20	 23461530	 23461589	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47097_PI429285431	3.1030009	P	0.90712726	A	4.58167028381515	0	lncRNA	51178-2_{3001..3425}	"gi|358001079|ref|NR_045557.1| Homo sapiens URI1, prefoldin-like chaperone (URI1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|358001079|ref|NR_045557.1| Homo sapiens URI1, prefoldin-like chaperone (URI1), transcript variant 4, non-coding RNA"	Chr19	 30436146	 30436570	+	8725	NR_045557.1	NA	NA	NA	NA	NA	inter
CUST_1020_PI429285431	1.7324908	A	3.1132448	A	0.384018042374907	0	lncRNA	1009-1_{1..463}	"transcript_id ""ENST00000561715.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561715.1"" | genecode_v17"	chr2	110988683	110989145	+	ENSG00000261760.2	ENST00000561715.1	RP11-1223D19.1	RP11-1223D19.1-005	NA	NA	NA	inter
CUST_46524_PI429285431	8.621152	P	9.29157	P	0.628324612926106	0	lncRNA	50714-1_{1..2561}	"gi|223468578|ref|NR_026811.1| Homo sapiens golgin subfamily A member 2-like (AGSK1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223468578|ref|NR_026811.1| Homo sapiens golgin subfamily A member 2-like (AGSK1), non-coding RNA"	Chr15	 82763613	 82766173	-	80154	NR_026811.2	NA	NA	NA	"hg19_refFlat_DNM1:range=chr9:130965750-1310154015'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310154015'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
LNCA_21_P0014323	2.3450277	A	2.1670542	A	1.13129368259985	0	lncRNA	XR_109285	XR_109285	XR_109285	NA	NA	LOC100507092	uncharacterized LOC100507092	NA	THC2628750	NA	"PREDICTED: Homo sapiens hypothetical LOC100507092 (LOC100507092), miscRNA [XR_109285]"	chr16:31129871-31130057	hs|16p11.2	Agilent_HUMAN_G3V2	XR_109285	XR_109285	chr16	 31129871	 31130057	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31264_PI429285431	3.7354105	P	3.5510674	P	1.13629946602873	0	lncRNA	33054-1_{1..1841}	n337721|BC016048|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|103|NULL|3.5823500|-0.1139208	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337721|BC016048|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|103|NULL|3.5823500|-0.1139208	chr1	 13801444	 13803284	-	NA	NA	NA	NA	LRRC38	NA	chr1:13801445-13840242	inner
CUST_43500_PI429285431	1.9215279	A	2.2914834	A	0.773806364498736	0	lncRNA	48292-1_{1..3000}	"gi|197313754|ref|NR_024113.1| Homo sapiens chromosome 1 open reading frame 52 (C1orf52), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|197313754|ref|NR_024113.1| Homo sapiens chromosome 1 open reading frame 52 (C1orf52), transcript variant 2, non-coding RNA"	Chr1	 85715636	 85718635	-	148423	NR_024113.1	NA	NA	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
CUST_21816_PI429285431	7.3209734	P	7.804863	P	0.715047208965736	0	lncRNA	23425-1_{1..433}	lnc-TAS1R2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TAS1R2-1:1	chr1	 18505546	 18505978	-	lnc-TAS1R2-1	lnc-TAS1R2-1:1	ENSG00000230035.1	RP11-174G17	IGSF21	NA	chr1:18495546-18515840	inner
CUST_26151_PI429285431	1.2585167	A	2.2449217	A	0.504733937671512	0	lncRNA	27662-1_{1..448}	lnc-PKLR-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PKLR-2:1	chr1	155366715	155367162	-	lnc-PKLR-2	lnc-PKLR-2:1	ENSG00000227773.1	ASH1L-IT1	ASH1L	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-30.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70chr1:155356715-155376769"	NA	inner
CUST_51482_PI429285431	4.3458567	P	5.343433	P	0.50084069638994	0	lncRNA	55058-1_{1..2170}	hg19_lincRNAsTranscripts_TCONS_l2_00010143 range=chr16:46658641-46660887 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010143 range=chr16:46658641-46660887 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 46658641	 46660810	-	NA	NA	NA	NA	SHCBP1	NA	chr16:46648641-46655311	inter
CUST_20110_PI429285431	0.8918762	A	0.9063187	A	0.990039162895874	0	lncRNA	21758-1_{1..263}	lnc-FAN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAN1-1:1	chr15	 31334431	 31334693	+	lnc-FAN1-1	lnc-FAN1-1:1	ENSG00000259720.1	RP11-348B17.1	TRPM1	NA	chr15:31324431-31344505	inner
LNCA_21_P0001277	0.88439214	A	0.8929273	A	0.994101343700439	0	lncRNA	TCONS_00000876	NA	NA	NA	NA	XLOC_000114	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000114), lincRNA [TCONS_00000876]"	chr1:30159192-30161259	hs|1p35.3	Agilent_HUMAN_G3V2	TCONS_00000876	TCONS_00000876	chr1	 30159192	 30161259	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006593	0.88372546	A	0.8917148	A	0.994477516789665	0	lncRNA	ENST00000439525	NA	NA	NA	NA	XLOC_008292	NA	ENST00000439525	THC2666505	NA	"BROAD Institute lincRNA (XLOC_008292), lincRNA [TCONS_00017612]"	chrY:6225357-6225298	hs|Yp11.2	Agilent_HUMAN_G3V2	ENST00000439525	ENST00000439525	chrY	  6225298	  6225357	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23723_PI429285431	1.2854394	A	0.9134964	A	1.29409452458845	0	lncRNA	25287-1_{1..451}	lnc-APBB2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-APBB2-1:2	chr4	 41258576	 41259026	-	lnc-APBB2-1	lnc-APBB2-1:2	ENSG00000251173.1	RP11-124A7.2	UCHL1	"hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30chr4:41258898-41268738"	NA	inter
CUST_24710_PI429285431	0.88868517	A	0.9242989	A	0.975616640074675	0	lncRNA	26256-1_{1..583}	lnc-SAP30-5:22	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:22	chr4	174458514	174459096	+	lnc-SAP30-5	lnc-SAP30-5:22	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174448514-174451378	inter
LNCA_21_P0010927	8.248997	P	8.383781	P	0.910806189096438	0	lncRNA	ENST00000423621	NA	NA	NA	NA	XLOC_l2_001683	NA	ENST00000423621	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001683), lincRNA [TCONS_l2_00004022]"	chr10:92821857-92821916	hs|10q23.31	Agilent_HUMAN_G3V2	ENST00000423621	ENST00000423621	chr10	 92821857	 92821916	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8247_PI429285431	9.686787	P	8.652514	P	2.04808132094021	0	lncRNA	9837-1_{1..766}	lnc-GPR55-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR55-1:3	chr2	231860563	231861328	-	lnc-GPR55-1	lnc-GPR55-1:3	ENSG00000238062	XLOC_002517	SPATA3	NA	chr2:231860839-231870747	inter
CUST_26352_PI429285431	0.8998726	A	1.2531024	A	0.782829593139521	0	lncRNA	27859-1_{1..380}	lnc-DUPD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DUPD1-1:1	chr10	 76783901	 76784280	-	lnc-DUPD1-1	lnc-DUPD1-1:1	ENSG00000227186.1	RP11-77G23.5	KAT6B	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50chr10:76773901-76792639"	NA	inner
CUST_14383_PI429285431	0.90120816	A	0.90906334	A	0.994570000165264	0	lncRNA	16044-1_{1..273}	lnc-TMEM17-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM17-2:7	chr2	 62858537	 62858809	-	lnc-TMEM17-2	lnc-TMEM17-2:7	XLOC_002117	linc-TMEM17	NA	NA	NA	inter
CUST_31279_PI429285431	1.5638679	A	2.1930304	A	0.646551636582554	0	lncRNA	33068-1_{1..3000}	n337740|AK096098|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|122|NULL|-0.8938230|-0.3616532	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337740|AK096098|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|122|NULL|-0.8938230|-0.3616532	chr1	 19536888	 19539887	+	NA	NA	NA	NA	UBR4	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10chr1:19526888-19536746"	NA	inter
CUST_5429_PI429285431	1.9293685	A	1.7358733	A	1.14353078097711	0	lncRNA	5363-1_{1..378}	"transcript_id ""ENST00000577041.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577041.1"" | genecode_v17"	chr16	 11914008	 11914385	-	ENSG00000262117.1	ENST00000577041.1	BCAR4	BCAR4-002	RSL1D1	NA	chr16:11928053-11932668	inter
CUST_30959_PI429285431	0.9038143	A	0.91275865	A	0.993819427816628	0	lncRNA	32747-1_{1..608}	n337080|DQ268529|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342562|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342562|-1.1764300|-0.3682985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337080|DQ268529|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342562|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342562|-1.1764300|-0.3682985	chr20	 57252234	 57252841	+	NA	NA	NA	NA	STX16	NA	chr20:57242234-57254582	inter
CUST_44215_PI429285431	1.3294363	A	0.9215416	A	1.32674829982997	0	lncRNA	48867-1_{1..1111}	"gi|397139036|ref|XR_158766.1| PREDICTED: Homo sapiens uncharacterized LOC100996310 (LOC100996310), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139036|ref|XR_158766.1| PREDICTED: Homo sapiens uncharacterized LOC100996310 (LOC100996310), misc_RNA"	NA	NA	NA	NA	NA	XR_158766.1	NA	NA	NA	NA	NA	Unknown
CUST_18957_PI429285431	0.8810642	A	0.9630146	A	0.944779522053445	0	lncRNA	20649-1_{1..635}	lnc-FAM149B1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM149B1-1:3	chr10	 75013559	 75014193	+	lnc-FAM149B1-1	lnc-FAM149B1-1:3	ENSG00000227540	RP11-152N13.5	TTC18	"hg19_refFlat_TTC18:range=chr10:75013733-751145545'pad=0,hg19_refFlat_TTC18:range=chr10:75013733-751145545'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70chr10:75013516-75024107"	NA	inner
CUST_47758_PI429285431	0.92765325	A	1.9941818	A	0.477466510108611	0	lncRNA	51697-2_{3001..5805}	"gi|385137078|ref|NR_047616.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 46, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137078|ref|NR_047616.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 46, non-coding RNA"	ChrY	 15363259	 15366063	-	7404	NR_047616.1	NA	NA	NA	NA	NA	inter
CUST_21990_PI429285431	6.4055185	P	6.5027685	P	0.934813192932955	0	lncRNA	23598-1_{1..531}	lnc-CPLX1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPLX1-2:3	chr4	   775560	   776090	-	lnc-CPLX1-2	lnc-CPLX1-2:3	ENSG00000249592.1	RP11-440L14.1	CPLX1	NA	chr4:778745-785637	inter
CUST_5319_PI429285431	0.887919	A	0.89949226	A	0.992010117616705	0	lncRNA	5258-1_{1..657}	"transcript_id ""ENST00000556928.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556928.1"" | genecode_v17"	chr15	 94433692	 94434348	-	ENSG00000258754.3	ENST00000556928.1	CTD-3049M7.1	CTD-3049M7.1-007	NA	NA	NA	inter
CUST_46296_PI429285431	0.9130251	A	1.4485267	A	0.689918762226866	0	lncRNA	50528-1_{1..569}	"gi|310123082|ref|XR_110268.1| PREDICTED: Homo sapiens uncharacterized LOC728755 (LOC728755), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123082|ref|XR_110268.1| PREDICTED: Homo sapiens uncharacterized LOC728755 (LOC728755), misc_RNA"	Chr14	 27791128	 27791696	-	728755	XR_110268.2	NA	NA	NA	NA	NA	inter
CUST_35484_PI429285431	6.5057573	P	4.743623	P	3.39199560357506	0	lncRNA	36892-1_{1..2679}	n342582|AK024356|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5081|NULL|-1.1939100|-0.4455806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342582|AK024356|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5081|NULL|-1.1939100|-0.4455806	chr18	 67994752	 67997430	+	NA	NA	NA	NA	SOCS6	NA	chr18:67984752-67997434	inner
LNCA_21_P0008696	0.880195	A	0.88096374	A	0.999467291975746	0	lncRNA	TCONS_00023557	NA	NA	NA	NA	XLOC_011384	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011384), lincRNA [TCONS_00023557]"	chr15:100892755-100892814	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_00023557	TCONS_00023557	chr15	100892755	100892814	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15032_PI429285431	0.8877007	A	0.8972879	A	0.993376690797539	0	lncRNA	16695-1_{1..604}	lnc-UBL4B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBL4B-1:2	chr1	110627540	110628143	+	lnc-UBL4B-1	lnc-UBL4B-1:2	XLOC_000340	linc-UBL4B	NA	NA	NA	inter
CUST_45820_PI429285431	13.789975	P	13.634011	P	1.11416584835946	0	lncRNA	50154-1_{1..936}	"gi|223718083|ref|NR_026882.1| Homo sapiens uncharacterized LOC26070 (DKFZP434K028), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223718083|ref|NR_026882.1| Homo sapiens uncharacterized LOC26070 (DKFZP434K028), non-coding RNA"	Chr11	 61521501	 61522436	-	26070	NR_026882.1	NA	NA	NA	NA	NA	inter
CUST_32572_PI429285431	4.873956	P	4.776602	P	1.06980955924191	0	lncRNA	34236-1_{1..3000}	n339190|BC031945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1621|NULL|2.5838600|-0.1413969	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339190|BC031945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1621|NULL|2.5838600|-0.1413969	chr2	239061529	239064528	-	NA	NA	NA	NA	FAM132B	NA	chr2:239072683-239074635	inner
LNCA_21_P0001730	1.0317806	A	2.0261521	A	0.501954499595558	0	lncRNA	THC2705771	NA	NA	NA	NA	XLOC_000895	NA	NA	THC2705771	NA	"BROAD Institute lincRNA (XLOC_000895), lincRNA [TCONS_00002401]"	chr1:085080094-085080035	hs|1p22.3	Agilent_HUMAN_G3V2	THC2705771	THC2705771	chr1	 85080035	 85080094	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34766_PI429285431	0.8772827	A	0.87748194	A	0.999861906891476	0	lncRNA	36206-1_{1..534}	n341675|AF085907|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4146|NULL|-1.1050100|-0.2387659	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341675|AF085907|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4146|NULL|-1.1050100|-0.2387659	chr9	 34107126	 34107659	+	NA	NA	NA	NA	DCAF12	"hg19_refFlat_DCAF12:range=chr9:34088348-341264295'pad=0,hg19_refFlat_DCAF12:range=chr9:34088348-341264295'pad=0 3'pad=0 strand=- repeatMasking=none,-96.20chr9:34097126-34117655"	NA	inner
CUST_18622_PI429285431	7.7926626	P	7.9936023	P	0.8699837144623	0	lncRNA	20327-1_{1..596}	lnc-KIAA0930-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA0930-2:2	chr22	 45559453	 45560048	-	lnc-KIAA0930-2	lnc-KIAA0930-2:2	ENSG00000226328	CTA-217C2.1	NUP50	NA	chr22:45559726-45569540	inter
CUST_541_PI429285431	7.142948	P	7.352177	P	0.864999377726906	0	lncRNA	533-1_{1..598}	"transcript_id ""ENST00000430471.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430471.1"" | genecode_v17"	chr1	201433511	201434108	-	ENSG00000224818.1	ENST00000430471.1	RP11-134G8.8	RP11-134G8.8-001	PHLDA3	"hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80chr1:201434622-201438299"	NA	inter
CUST_32639_PI429285431	5.0113206	P	5.344325	P	0.793881509710348	0	lncRNA	34296-2_{3001..5593}	n339262|AL133111|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1694|NULL|-0.7685540|-0.2684131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339262|AL133111|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1694|NULL|-0.7685540|-0.2684131	chr3	 15298690	 15301282	+	NA	NA	NA	NA	SH3BP5	"hg19_refFlat_SH3BP5:range=chr3:15297593-153739155'pad=0,hg19_refFlat_SH3BP5:range=chr3:15297593-153739155'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30;hg19_refFlat_SH3BP5:range=chr3:15297593-153112435'pad=0,hg19_refFlat_SH3BP5:range=chr3:15297593-153112435'pad=0 3'pad=0 strand=- repeatMasking=none,-97.30chr3:15296357-15316000"	NA	inner
CUST_25239_PI429285431	10.963407	P	11.22678	P	0.833137776622664	0	lncRNA	26769-2_{3001..5618}	lnc-OGFOD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OGFOD2-1:1	chr12	123470016	123472633	+	lnc-OGFOD2-1	lnc-OGFOD2-1:1	ENSG00000256028.2	RP11-197N18.2	PITPNM2	NA	chr12:123468027-123477454	inner
LNCA_21_P0006427	0.8830797	A	0.8857135	A	0.998176054370063	0	lncRNA	ENST00000413763	NA	NA	NA	NA	XLOC_008018	NA	ENST00000413763	NA	NA	"BROAD Institute lincRNA (XLOC_008018), lincRNA [TCONS_00016997]"	chrX:75123640-75123699	hs|Xq13.3	Agilent_HUMAN_G3V2	ENST00000413763	ENST00000413763	chrX	 75123640	 75123699	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34043_PI429285431	2.041353	A	2.9043791	A	0.54979812809162	0	lncRNA	35575-1_{1..624}	n340861|AL137623|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3326|NULL|1.1493800|-0.1500457	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340861|AL137623|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3326|NULL|1.1493800|-0.1500457	chr9	 95840245	 95840868	+	NA	NA	NA	NA	SUSD3	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50chr9:95830245-95847415"	NA	inner
CUST_29475_PI429285431	10.543897	P	10.300545	P	1.18373980460103	0	lncRNA	31233-1_{1..586}	n332894|AF086062|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066941_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066941_05|-1.1747200|-0.3045755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332894|AF086062|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066941_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066941_05|-1.1747200|-0.3045755	chr1	147871870	147872455	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21644_PI429285431	0.8968546	A	1.1788132	A	0.822473670319478	0	lncRNA	23256-1_{1..364}	lnc-APOBEC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-APOBEC4-1:1	chr1	183723978	183724341	-	lnc-APOBEC4-1	lnc-APOBEC4-1:1	ENSG00000227554.1	RP11-444D13.1	RGL1	NA	chr1:183713978-183734072	inner
CUST_7669_PI429285431	14.358116	P	13.29045	P	2.09603963829385	0	lncRNA	9302-1_{1..1698}	lnc-SERPINC1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SERPINC1-1:7	chr1	173837098	173838795	-	lnc-SERPINC1-1	lnc-SERPINC1-1:7	ENSG00000234741	GAS5	DARS2	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50chr1:173827098-173827682"	NA	inter
LNCA_21_P0012654	7.6031485	P	7.087813	P	1.42932649222742	0	lncRNA	THC2558518	NA	NA	NA	NA	XLOC_l2_011043	NA	NA	THC2558518	NA	"BROAD Institute lincRNA (XLOC_l2_011043), lincRNA [TCONS_l2_00021057]"	NA	NA	Agilent_HUMAN_G3V2	THC2558518	THC2558518	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46482_PI429285431	7.043358	P	6.0605407	P	1.97632100983343	0	lncRNA	50678-1_{1..2369}	"gi|371933012|ref|NR_045901.1| Homo sapiens von Willebrand factor A domain containing 9 (VWA9), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371933012|ref|NR_045901.1| Homo sapiens von Willebrand factor A domain containing 9 (VWA9), transcript variant 7, non-coding RNA"	Chr15	 65871095	 65873463	-	81556	NR_045901.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0011945	13.921753	P	13.732552	P	1.1401321077791	0	lncRNA	TCONS_l2_00014773	NA	NA	NA	NA	XLOC_l2_008195	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008195), lincRNA [TCONS_l2_00014773]"	chr2:109328840-109328781	hs|2q12.3	Agilent_HUMAN_G3V2	TCONS_l2_00014773	TCONS_l2_00014773	chr2	109328781	109328840	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17878_PI429285431	2.427182	A	2.8299918	P	0.756383711120996	0	lncRNA	19615-1_{1..708}	lnc-NCOA3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCOA3-4:1	chr20	 46440249	 46440956	+	lnc-NCOA3-4	lnc-NCOA3-4:1	XLOC_013542	linc-ARFGEF2-13	NA	NA	NA	inter
LNCA_33_P3255165	9.6215315	P	10.274351	P	0.636036074817434	0	lncRNA	ENST00000540599	XR_110433	XR_110433	NA	Hs.713690	NA	NA	ENST00000540599	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100132116 (LOC100132116), miscRNA [XR_110433]"	chr10:90693582-90693641	hs|10q23.31	Agilent_HUMAN_G3V2	ENST00000540599	ENST00000540599	chr10	 90693582	 90693641	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010641	5.150872	P	5.456233	P	0.809239698291073	0	lncRNA	ENST00000430107	NA	NA	NA	NA	XLOC_l2_001064	NA	ENST00000430107	THC2778940	NA	"BROAD Institute lincRNA (XLOC_l2_001064), lincRNA [TCONS_l2_00001460]"	chr1:117008940-117008881	hs|1p13.1	Agilent_HUMAN_G3V2	ENST00000430107	ENST00000430107	chr1	117008881	117008940	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1647_PI429285431	1.5872717	A	0.90126354	A	1.60882584150736	0	lncRNA	1632-1_{1..673}	"transcript_id ""ENST00000602175.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602175.1"" | genecode_v17"	chr3	195435025	195435697	+	ENSG00000242086.3	ENST00000602175.1	AC069513.3	AC069513.3-017	NA	NA	NA	inter
CUST_34787_PI429285431	2.7116656	A	3.800136	P	0.47025969755695	0	lncRNA	36224-1_{1..674}	n341694|AF083893|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4165|NULL|2.5144500|-0.1170177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341694|AF083893|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4165|NULL|2.5144500|-0.1170177	chr9	 71736385	 71737058	+	NA	NA	NA	NA	TJP2	NA	chr9:71736224-71843277	inner
CUST_19624_PI429285431	0.9026848	A	0.9232502	A	0.985846270282918	0	lncRNA	21280-1_{1..174}	lnc-DCLRE1B-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DCLRE1B-2:3	chr1	114371708	114371881	+	lnc-DCLRE1B-2	lnc-DCLRE1B-2:3	ENSG00000231128.1	RP5-1073O3.2	PTPN22	NA	chr1:114361708-114381793	inner
CUST_8135_PI429285431	2.6214592	A	2.1149604	A	1.42059843392492	0	lncRNA	9738-1_{1..2455}	lnc-RP11-204N11.1.1-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-204N11.1.1-3:9	chr14	 98444314	 98446768	-	lnc-RP11-204N11.1.1-3	lnc-RP11-204N11.1.1-3:9	ENSG00000246223	ENST00000502187	NA	NA	NA	inter
CUST_39304_PI429285431	4.765709	P	3.9567497	P	1.75194720509637	0	lncRNA	40272-1_{1..3000}	n386315|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gto.2||1.9354800|-0.3043597	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386315|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gto.2||1.9354800|-0.3043597	chr22	 22652462	 22655461	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60"	NA	inter
CUST_48462_PI429285431	7.494781	P	7.0385413	P	1.37196121741579	0	lncRNA	52314-1_{1..372}	hg19_lincRNAsTranscripts_TCONS_l2_00000842 range=chr1:223000884-223010704 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000842 range=chr1:223000884-223010704 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	223000884	223001255	+	NA	NA	NA	NA	DISP1	NA	chr1:222990884-223020704	inner
LNCA_21_P0013325	0.90277594	A	0.92086613	A	0.987539123562403	0	lncRNA	THC2534069	NA	NA	NA	NA	XLOC_l2_013873	NA	NA	THC2534069	NA	"BROAD Institute lincRNA (XLOC_l2_013873), lincRNA [TCONS_l2_00026658]"	chr7:065991073-065991014	hs|7q11.21	Agilent_HUMAN_G3V2	THC2534069	THC2534069	chr7	 65991014	 65991073	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22069_PI429285431	6.8512545	P	6.895677	P	0.969677894042978	0	lncRNA	23675-1_{1..815}	lnc-RIC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RIC3-1:1	chr11	  8061064	  8061878	-	lnc-RIC3-1	lnc-RIC3-1:1	ENSG00000254921.1	RP11-236J17.6	TUB	"hg19_refFlat_TUB:range=chr11:8060421-81231665'pad=0,hg19_refFlat_TUB:range=chr11:8060421-81231665'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90chr11:8060180-8071265"	NA	inner
CUST_32238_PI429285431	1.0106857	A	0.91464305	A	1.06883758849806	0	lncRNA	33930-1_{1..2991}	n338812|BC045767|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1235|NULL|0.3490130|-0.2979233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338812|BC045767|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1235|NULL|0.3490130|-0.2979233	chr13	 95413194	 95416184	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50"	NA	inter
LNCA_21_P0007105	0.9011091	A	0.9180135	A	0.988351142291254	0	lncRNA	ENST00000427247	NA	NA	NA	NA	XLOC_008844	NA	ENST00000427247	NA	NA	"BROAD Institute lincRNA (XLOC_008844), lincRNA [TCONS_00018945]"	chr10:71767316-71767257	hs|10q22.1	Agilent_HUMAN_G3V2	ENST00000427247	ENST00000427247	chr10	 71767257	 71767316	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9832_PI429285431	4.6261654	P	4.525077	P	1.0725823364406	0	lncRNA	11353-1_{1..657}	lnc-HPCAL1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HPCAL1-1:2	chr2	 10593995	 10594651	+	lnc-HPCAL1-1	lnc-HPCAL1-1:2	XLOC_001342	linc-ATP6V1C2-4	ODC1	NA	chr2:10583995-10588453	inter
LNCA_21_P0002655	1.4414783	A	2.7081866	A	0.415606954301371	0	lncRNA	ENST00000452212	XR_109967	XR_109967	NA	NA	XLOC_002035	NA	ENST00000452212	THC2630543	NA	"PREDICTED: Homo sapiens hypothetical LOC100505774 (LOC100505774), miscRNA [XR_109967]"	chr2:28931974-28931915	hs|2p23.2	Agilent_HUMAN_G3V2	ENST00000452212	ENST00000452212	chr2	 28931915	 28931974	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18003_PI429285431	0.9024718	A	0.91622615	A	0.990511513560267	0	lncRNA	19737-1_{1..645}	lnc-THBD-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THBD-1:4	chr20	 23011181	 23011825	-	lnc-THBD-1	lnc-THBD-1:4	XLOC_013687	linc-FOXA2-1	SSTR4	NA	chr20:23001181-23017314	inter
CUST_23909_PI429285431	10.384262	P	10.682434	P	0.813282231774828	0	lncRNA	25466-2_{3001..4730}	lnc-TNPO3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNPO3-1:1	chr7	128553686	128555415	-	lnc-TNPO3-1	lnc-TNPO3-1:1	ENSG00000135253.8	KCP	KCP	NA	chr7:128540686-128550773	inner
LNCA_21_P0004306	3.653219	P	4.848611	P	0.43666778322089	0	lncRNA	TCONS_00010108	NA	NA	NA	NA	XLOC_004576	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004576), lincRNA [TCONS_00010108]"	chr5:139531705-139531764	hs|5q31.3	Agilent_HUMAN_G3V2	TCONS_00010108	TCONS_00010108	chr5	139531705	139531764	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23651_PI429285431	0.89634955	A	0.89626706	A	1.0000571793456	0	lncRNA	25217-1_{1..587}	lnc-ERICH1-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ERICH1-6:2	chr8	  1568540	  1569126	-	lnc-ERICH1-6	lnc-ERICH1-6:2	ENSG00000253267.1	RP11-666I19.2	DLGAP2	"hg19_refFlat_DLGAP2:range=chr8:1496860-16495725'pad=0,hg19_refFlat_DLGAP2:range=chr8:1496860-16495725'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.50;hg19_refFlat_DLGAP3:range=chr1:35331684-353709845'pad=0,hg19_refFlat_DLGAP3:range=chr1:35331684-353709845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr8:1558540-1578701"	NA	inner
CUST_42641_PI429285431	0.8824252	A	1.4014136	A	0.697860993194931	0	lncRNA	45521-1_{1..130}	ENST00000516165 ncrna:snoRNA chromosome:GRCh37:2:86591259:86591388:1 gene:ENSG00000251974 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516165 ncrna:snoRNA chromosome:GRCh37:2:86591259:86591388:1 gene:ENSG00000251974 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 86591259	 86591388	+	ENSG00000251974	ENST00000516165	NA	NA	NA	NA	NA	inter
CUST_51582_PI429285431	7.469633	P	5.916326	P	2.93489115552979	0	lncRNA	55147-1_{1..2334}	hg19_lincRNAsTranscripts_TCONS_l2_00011134 range=chr17:20384375-20387265 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011134 range=chr17:20384375-20387265 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 20384375	 20386708	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10958_PI429285431	0.91395444	A	0.91304696	A	1.00062921507622	0	lncRNA	12500-1_{1..675}	lnc-RAB1A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB1A-3:1	chr2	 65197706	 65198380	-	lnc-RAB1A-3	lnc-RAB1A-3:1	XLOC_002131	linc-SERTAD2-2	SLC1A4	NA	chr2:65187706-65207921	inter
CUST_34594_PI429285431	5.168853	P	3.8111308	P	2.56280231710776	0	lncRNA	36052-1_{1..1482}	n341478|D83767|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3948|NULL|6.5572000|-0.2153908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341478|D83767|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3948|NULL|6.5572000|-0.2153908	chr8	 30601698	 30603179	+	NA	NA	NA	NA	UBXN8	NA	chr8:30601690-30624522	inner
CUST_21331_PI429285431	4.3447165	P	3.9513128	P	1.31348861900972	0	lncRNA	22954-1_{1..1469}	lnc-MTERFD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MTERFD3-1:1	chr12	107347807	107349275	-	lnc-MTERFD3-1	lnc-MTERFD3-1:1	ENSG00000260329.1	RP11-412D9.4	C12orf23	NA	chr12:107337807-107359275	inter
CUST_17902_PI429285431	0.90631175	A	0.90630746	A	1.00000297360583	0	lncRNA	19634-1_{1..1212}	lnc-C10orf68-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf68-4:1	chr10	 33825092	 33826303	+	lnc-C10orf68-4	lnc-C10orf68-4:1	XLOC_008445	linc-CREM-4	NA	NA	NA	inter
LNCA_21_P0002871	0.8787932	A	0.88159883	A	0.998057175207901	0	lncRNA	ENST00000473528	NA	NA	NA	NA	XLOC_003208	NA	ENST00000473528	THC2635692	NA	"BROAD Institute lincRNA (XLOC_003208), lincRNA [TCONS_00005809]"	chr3:107596220-107596161	hs|3q13.12	Agilent_HUMAN_G3V2	ENST00000473528	ENST00000473528	chr3	107596161	107596220	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001231	5.7159047	P	6.111644	P	0.760099768457139	0	lncRNA	ENST00000437416	NA	NA	NA	NA	XLOC_001228	NA	ENST00000437416	NA	NA	"BROAD Institute lincRNA (XLOC_001228), lincRNA [TCONS_00000744]"	chr1:224803057-224802998	hs|1q42.12	Agilent_HUMAN_G3V2	ENST00000437416	ENST00000437416	chr1	224802998	224803057	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36792_PI429285431	7.190692	P	7.059915	P	1.09488321961985	0	lncRNA	37964-1_{1..1374}	n345271|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_820|NULL|-1.3254100|-0.3010652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345271|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_820|NULL|-1.3254100|-0.3010652	chr14	 71023475	 71024848	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41208_PI429285431	0.88930476	A	0.89767957	A	0.994211840378428	0	lncRNA	42090-1_{1..98}	ENST00000385287 ncrna:miRNA chromosome:GRCh37:12:81329515:81329612:-1 gene:ENSG00000208022 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385287 ncrna:miRNA chromosome:GRCh37:12:81329515:81329612:-1 gene:ENSG00000208022 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 81329515	 81329612	-	ENSG00000208022	ENST00000385287	NA	NA	LIN7A	NA	chr12:81319515-81331694	inner
CUST_26166_PI429285431	4.4492855	P	4.5625033	P	0.924523694587564	0	lncRNA	27677-1_{1..1789}	lnc-AC023632.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC023632.1-2:1	chr8	 95580371	 95582159	+	lnc-AC023632.1-2	lnc-AC023632.1-2:1	ENSG00000253704.1	RP11-267M23.4	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10"	NA	inter
CUST_21729_PI429285431	2.8510773	A	2.6446388	A	1.15383625457325	0	lncRNA	23339-1_{1..713}	lnc-RP11-579D7.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-579D7.1.1-1:1	chr12	 49160665	 49161377	+	lnc-RP11-579D7.1.1-1	lnc-RP11-579D7.1.1-1:1	ENSG00000257653.1	RP11-579D7.2	ADCY6	NA	chr12:49159975-49171106	inner
CUST_50714_PI429285431	1.0734005	A	1.0622255	A	1.00777599698758	0	lncRNA	54383-1_{1..398}	hg19_lincRNAsTranscripts_TCONS_l2_00003144 range=chr10:88511412-88511863 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003144 range=chr10:88511412-88511863 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 88511412	 88511809	+	NA	NA	NA	NA	BMPR1A	NA	chr10:88516396-88521863	inter
LNCA_21_P0009615	2.3572044	A	2.1756988	A	1.13406678276176	0	lncRNA	TCONS_00026648	NA	NA	NA	NA	XLOC_012725	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012725), lincRNA [TCONS_00026648]"	chr18:73961766-73963125	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026648	TCONS_00026648	chr18	 73961766	 73963125	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40791_PI429285431	6.372694	P	5.0632796	P	2.47840919206589	0	lncRNA	41501-2_{3001..3904}	n410547|NR_037714|lncRNA|Homosapiens||RefGeneNoncode|NR_037714||2.6069400|-0.2597557	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410547|NR_037714|lncRNA|Homosapiens||RefGeneNoncode|NR_037714||2.6069400|-0.2597557	chr17	 33339130	 33340033	-	NA	NA	NA	NA	RAD51D	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00chr17:33426811-33446888"	NA	inter
CUST_31482_PI429285431	0.8799696	A	0.87780666	A	1.00150036017851	0	lncRNA	33247-2_{3001..3575}	n337961|BX640776|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|346|NULL|-1.2049300|-0.3170792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337961|BX640776|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|346|NULL|-1.2049300|-0.3170792	chr1	 55534370	 55534944	+	NA	NA	NA	NA	USP24	"hg19_refFlat_USP24:range=chr1:55534718-556807865'pad=0,hg19_refFlat_USP24:range=chr1:55534718-556807865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr1:55532032-55544931"	NA	inner
CUST_8639_PI429285431	4.134459	P	4.7167587	P	0.667898278125727	0	lncRNA	10192-1_{1..606}	lnc-PRKAG2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRKAG2-1:1	chr7	151575718	151576323	-	lnc-PRKAG2-1	lnc-PRKAG2-1:1	ENSG00000251505	ENST00000508128	PRKAG2	NA	chr7:151565718-151574316	inter
CUST_4373_PI429285431	1.1823654	A	0.8889177	A	1.22556559285696	0	lncRNA	4327-1_{1..894}	"transcript_id ""ENST00000551571.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551571.1"" | genecode_v17"	chr12	 91755973	 91756866	+	ENSG00000258100.1	ENST00000551571.1	RP11-121E16.1	RP11-121E16.1-001	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
CUST_21686_PI429285431	5.564017	P	5.7102447	P	0.903610099063695	0	lncRNA	23296-1_{1..815}	lnc-CDR2L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDR2L-1:1	chr17	 72971261	 72972075	+	lnc-CDR2L-1	lnc-CDR2L-1:1	ENSG00000263586.1	RP11-309N17.4	C17orf28	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90chr17:72961261-72968900"	NA	inter
CUST_42317_PI429285431	8.219383	P	8.1874695	P	1.02236723046392	0	lncRNA	44948-1_{1..134}	ENST00000383934 ncrna:snoRNA chromosome:GRCh37:8:4985801:4985934:-1 gene:ENSG00000206661 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000383934 ncrna:snoRNA chromosome:GRCh37:8:4985801:4985934:-1 gene:ENSG00000206661 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	  4985801	  4985934	-	ENSG00000206661	ENST00000383934	NA	NA	NA	NA	NA	inter
CUST_25872_PI429285431	7.4807825	P	7.7080183	P	0.854270104065898	0	lncRNA	27393-1_{1..514}	lnc-SH3TC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SH3TC1-1:1	chr4	  8243092	  8243605	+	lnc-SH3TC1-1	lnc-SH3TC1-1:1	ENSG00000249762.1	AC104650.2	SH3TC1	NA	chr4:8233092-8242830	inter
CUST_16439_PI429285431	0.8800945	A	0.88254243	A	0.998304662932474	0	lncRNA	18138-1_{1..813}	lnc-CPSF7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPSF7-1:1	chr11	 61218353	 61219165	-	lnc-CPSF7-1	lnc-CPSF7-1:1	XLOC_009448	linc-CPSF7-2	SDHAF2	NA	chr11:61208353-61214239	inter
CUST_311_PI429201921	0.89482075	A	0.8940286	A	1.0005492273092	0	lncRNA	212-1_{1..3000}	TC04002378.hg.1	 TCONS_l2_00021793-XLOC_l2_010989 // Broad TUCP // linc-ZFP42-7 chr4:+:188334717-188336851 // chr4 // 100 // 100 // 0 // --- // 0/// TCONS_l2_00020950-XLOC_l2_010989 // Broad TUCP // linc-ZFP42-7 chr4:+:188329843-188337228 // chr4 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00020949-XLOC_l2_010989 // Broad TUCP // linc-ZFP42-7 chr4:+:188329843-188337228 // chr4 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr4:+:188329843-188337228	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00020949-XLOC_l2_010989	linc-ZFP42-7	chr4	188329843	188337228	+	NA	NA	NA	NA	LOC729041	NA	chr1:46903225-46911374	Unknown
LNCA_21_P0001340	5.7019854	P	5.9338923	P	0.851508655534677	0	lncRNA	TCONS_00001034	NA	NA	NA	NA	XLOC_000301	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000301), lincRNA [TCONS_00001034]"	chr1:94800216-94800746	hs|1p21.3	Agilent_HUMAN_G3V2	TCONS_00001034	TCONS_00001034	chr1	 94800216	 94800746	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002731	0.8834294	A	0.88492936	A	0.998960847248598	0	lncRNA	ENST00000425195	NA	NA	NA	NA	XLOC_002603	NA	ENST00000425195	THC2739678	NA	"BROAD Institute lincRNA (XLOC_002603), lincRNA [TCONS_00005502]"	chr3:27901754-27901813	hs|3p24.1	Agilent_HUMAN_G3V2	ENST00000425195	ENST00000425195	chr3	 27901754	 27901813	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26890_PI429285431	6.737586	P	6.764237	P	0.981696515731568	0	lncRNA	28407-1_{1..966}	n323965|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054571|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054571|0.1083040|-0.2661959	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323965|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054571|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054571|0.1083040|-0.2661959	chr9	131060453	131061418	+	NA	NA	NA	NA	TRUB2	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-20.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30chr9:131071396-131071946"	NA	inter
CUST_33763_PI429285431	0.89745206	A	0.89598197	A	1.00101950808408	0	lncRNA	35317-1_{1..1205}	n340543|CR611054|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3005|NULL|-1.0451200|-0.3339689	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340543|CR611054|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3005|NULL|-1.0451200|-0.3339689	chr5	 87831844	 87833048	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18791_PI429285431	5.3483953	P	5.930342	P	0.668061720108841	0	lncRNA	20487-1_{1..911}	lnc-MSTO1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MSTO1-1:1	chr1	155532772	155533682	+	lnc-MSTO1-1	lnc-MSTO1-1:1	ENSG00000235919	RP11-29H23.1	ASH1L	"hg19_refFlat_YY1AP1:range=chr1:155630644-1556587675'pad=0,hg19_refFlat_YY1AP1:range=chr1:155630644-1556587675'pad=0 3'pad=0 strand=- repeatMasking=none,-101.90;hg19_refFlat_YY1AP1:range=chr1:155629448-1556582555'pad=0,hg19_refFlat_YY1AP1:range=chr1:155629448-1556582555'pad=0 3'pad=0 strand=- repeatMasking=none,-101.90;hg19_refFlat_YY1AP1:range=chr1:155629448-1556587675'pad=0,hg19_refFlat_YY1AP1:range=chr1:155629448-1556587675'pad=0 3'pad=0 strand=- repeatMasking=none,-101.90chr1:155522772-155532324"	NA	inter
CUST_26324_PI429285431	6.754085	P	7.1214485	P	0.775197863660231	0	lncRNA	27831-1_{1..575}	lnc-MYBBP1A-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYBBP1A-2:4	chr17	  4386747	  4387321	-	lnc-MYBBP1A-2	lnc-MYBBP1A-2:4	ENSG00000262823.1	RP13-580F15.2	SPNS3	NA	chr17:4376747-4391499	inner
CUST_37303_PI429285431	3.7504723	P	3.9983833	P	0.842114902157786	0	lncRNA	38411-1_{1..315}	n345746|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1295|NULL|-1.3185200|-0.1138720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345746|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1295|NULL|-1.3185200|-0.1138720	chr13	 92000157	 92000471	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47441_PI429285431	8.698927	P	9.108017	P	0.753098251137819	0	lncRNA	51474-1_{1..1522}	"gi|374717345|ref|NR_046298.1| Homo sapiens solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 (SLC25A1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374717345|ref|NR_046298.1| Homo sapiens solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 (SLC25A1), transcript variant 4, non-coding RNA"	NW_003871096.1	    28792	    30313	-	6576	NR_046298.1	NA	NA	NA	NA	NA	Unknown
CUST_29776_PI429285431	5.1027718	P	2.9769413	A	4.36454269475197	0	lncRNA	31539-1_{1..792}	n333473|BC027491|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091352|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091352|2.8990800|-0.2276679	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333473|BC027491|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091352|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091352|2.8990800|-0.2276679	chr16	 53241943	 53242734	+	NA	NA	NA	NA	CHD9	NA	chr16:53231943-53266701	inner
CUST_33983_PI429285431	7.882223	P	8.213851	P	0.794639272014977	0	lncRNA	35520-1_{1..1637}	n340795|CR597908|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3258|NULL|-0.7558720|-0.1186427	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340795|CR597908|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3258|NULL|-0.7558720|-0.1186427	chr17	 62078216	 62079852	-	NA	NA	NA	NA	C17orf72	"hg19_refFlat_C17orf72:range=chr17:62075725-620793355'pad=0,hg19_refFlat_C17orf72:range=chr17:62075725-620793355'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_C17orf72:range=chr17:62075725-620791215'pad=0,hg19_refFlat_C17orf72:range=chr17:62075725-620791215'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_C17orf72:range=chr17:62075725-620788805'pad=0,hg19_refFlat_C17orf72:range=chr17:62075725-620788805'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.40chr17:62075711-62081645"	NA	inner
CUST_18426_PI429285431	1.2177325	A	0.8956581	A	1.25012677014824	0	lncRNA	20150-1_{1..517}	lnc-MRPL39-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPL39-4:1	chr21	 26838876	 26839392	-	lnc-MRPL39-4	lnc-MRPL39-4:1	ENSG00000243740	AP000221.2	NA	NA	NA	inter
CUST_42791_PI429285431	0.8859341	A	0.9009789	A	0.989625925090453	0	lncRNA	45782-1_{1..72}	ENST00000365029 ncrna:snoRNA chromosome:GRCh37:14:101451114:101451185:1 gene:ENSG00000201899 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365029 ncrna:snoRNA chromosome:GRCh37:14:101451114:101451185:1 gene:ENSG00000201899 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101451114	101451185	+	ENSG00000201899	ENST00000365029	NA	NA	NA	NA	NA	inter
LNCA_21_P0009659	8.407297	P	8.192616	P	1.16044729492785	0	lncRNA	TCONS_00026823	NA	NA	NA	NA	XLOC_012925	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012925), lincRNA [TCONS_00026823]"	chr19:5559129-5559188	hs|19p13.3	Agilent_HUMAN_G3V2	TCONS_00026823	TCONS_00026823	chr19	  5559129	  5559188	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2432_PI429285431	2.5998425	A	2.2652378	A	1.26103183740398	0	lncRNA	2424-1_{1..494}	"transcript_id ""ENST00000523242.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523242.1"" | genecode_v17"	chr5	173069522	173070015	+	ENSG00000253959.1	ENST00000523242.1	CTB-43E15.1	CTB-43E15.1-001	NA	NA	NA	inter
CUST_1181_PI429285431	0.90653265	A	0.910078	A	0.997545567700145	0	lncRNA	1171-1_{1..686}	"transcript_id ""ENST00000424170.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424170.1"" | genecode_v17"	chr2	181988562	181989247	+	ENSG00000234663.1	ENST00000424170.1	AC104820.2	AC104820.2-002	NA	NA	NA	inter
CUST_33309_PI429285431	0.9136571	A	0.9343622	A	0.985750812786883	0	lncRNA	34892-1_{1..1818}	n340026|AX747901|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2480|NULL|-0.9414620|-0.2071542	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340026|AX747901|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2480|NULL|-0.9414620|-0.2071542	chr10	 49717903	 49719720	-	NA	NA	NA	NA	ARHGAP22	NA	chr10:49707903-49729721	inner
LNCA_21_P0014728	4.4893637	P	4.6047497	P	0.923135288396605	0	lncRNA	XR_112912	XR_112912	XR_112912	NA	NA	LOC100507308	uncharacterized LOC100507308	NA	THC2516350	NA	"PREDICTED: Homo sapiens hypothetical LOC100507308 (LOC100507308), miscRNA [XR_112912]"	chr6:133756274-133756215	hs|6q23.2	Agilent_HUMAN_G3V2	XR_112912	XR_112912	chr6	133756215	133756274	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010580	1.1496577	A	0.9280149	A	1.1660606265604	0	lncRNA	TCONS_l2_00000881	NA	NA	NA	NA	XLOC_l2_000657	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000657), lincRNA [TCONS_l2_00000881]"	chr1:228390888-228390947	hs|1q42.13	Agilent_HUMAN_G3V2	TCONS_l2_00000881	TCONS_l2_00000881	chr1	228390888	228390947	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4853_PI429285431	0.89753044	A	0.9178966	A	0.985982427661303	0	lncRNA	4796-1_{1..533}	"transcript_id ""ENST00000554254.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554254.1"" | genecode_v17"	chr14	 62182276	 62182808	-	ENSG00000258667.1	ENST00000554254.1	HIF1A-AS2	HIF1A-AS2-001	HIF1A	NA	chr14:62172276-62214977	inner
CUST_8412_PI429285431	0.8895562	A	0.9014812	A	0.991768287502585	0	lncRNA	9987-3_{6001..6111}	lnc-KIF13B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIF13B-2:1	chr8	 28922370	 28922480	-	lnc-KIF13B-2	lnc-KIF13B-2:1	ENSG00000247743	AC091558.1	HMBOX1	NA	chr8:28906370-28910242	inter
LNCA_21_P0008685	1.9117824	A	3.739564	P	0.281697448198435	0	lncRNA	TCONS_00023533	NA	NA	NA	NA	XLOC_011368	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011368), lincRNA [TCONS_00023533]"	chr15:95995004-95995063	hs|15q26.2	Agilent_HUMAN_G3V2	TCONS_00023533	TCONS_00023533	chr15	 95995004	 95995063	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20735_PI429285431	0.9131306	A	0.9149074	A	0.998769174177797	0	lncRNA	22369-1_{1..331}	lnc-SPAG1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPAG1-3:2	chr8	101513193	101513523	+	lnc-SPAG1-3	lnc-SPAG1-3:2	ENSG00000253666.1	KB-1615E4.2	NA	NA	NA	inter
CUST_645_PI429285431	2.6527812	A	3.5648518	P	0.53142183078277	0	lncRNA	637-1_{1..762}	"transcript_id ""ENST00000444079.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444079.1"" | genecode_v17"	chr2	   558204	   558965	+	ENSG00000233633.1	ENST00000444079.1	AC093326.3	AC093326.3-001	NA	NA	NA	inter
CUST_10826_PI429285431	0.9092094	A	0.91658217	A	0.994902621215152	0	lncRNA	12361-1_{1..279}	lnc-MOCS2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MOCS2-2:2	chr5	 51985778	 51986056	-	lnc-MOCS2-2	lnc-MOCS2-2:2	XLOC_004818	linc-EMB-7	NA	NA	NA	inter
CUST_23403_PI429285431	0.99896836	A	1.4980336	A	0.707565082694399	0	lncRNA	24971-1_{1..424}	lnc-IL17B-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL17B-3:3	chr5	148656253	148656676	-	lnc-IL17B-3	lnc-IL17B-3:3	ENSG00000248647.2	RP11-331K21.1	AFAP1L1	NA	chr5:148651401-148666325	inner
CUST_32977_PI429285431	7.8071847	P	8.067557	P	0.834872445533053	0	lncRNA	34593-1_{1..1272}	n339653|CR602030|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2097|NULL|1.0820600|-0.1885686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339653|CR602030|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2097|NULL|1.0820600|-0.1885686	chr20	 32375283	 32376554	-	NA	NA	NA	NA	ZNF341	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr20:32365283-32380075"	NA	inner
CUST_3288_PI429285431	2.086817	A	2.1344576	A	0.967517324701617	0	lncRNA	3266-1_{1..571}	"transcript_id ""ENST00000521608.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521608.1"" | genecode_v17"	chr8	123682624	123683194	-	ENSG00000253819.1	ENST00000521608.1	RP11-973F15.1	RP11-973F15.1-001	NA	NA	NA	inter
CUST_7410_PI429285431	2.9912941	A	2.475747	A	1.42953614683778	0	lncRNA	9053-1_{1..2033}	lnc-HTR4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HTR4-1:2	chr5	147763062	147765094	-	lnc-HTR4-1	lnc-HTR4-1:2	ENSG00000247199	RP11-373N22.3	FBXO38	NA	chr5:147763546-147773346	inter
LNCA_19_P00316349	2.8442376	A	4.0528913	P	0.432672190106359	0	lncRNA	THC2641849	NA	NA	NA	NA	XLOC_012034	NA	NA	THC2641849	NA	"BROAD Institute lincRNA (XLOC_012034), lincRNA [TCONS_00024749]"	chr16:085341596-085341537	hs|16q24.1	Agilent_HUMAN_G3V2	THC2641849	THC2641849	chr16	 85341537	 85341596	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003173	0.90255195	A	0.9205514	A	0.987601237949458	0	lncRNA	TCONS_00006652	NA	NA	NA	NA	XLOC_003243	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003243), lincRNA [TCONS_00006652]"	chr3:127752290-127752231	hs|3q21.3	Agilent_HUMAN_G3V2	TCONS_00006652	TCONS_00006652	chr3	127752231	127752290	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42205_PI429285431	11.539781	P	11.822797	P	0.821871072402441	0	lncRNA	44290-1_{1..87}	ENST00000582457 ncrna:miRNA chromosome:GRCh37:9:139440625:139440711:-1 gene:ENSG00000265181 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582457 ncrna:miRNA chromosome:GRCh37:9:139440625:139440711:-1 gene:ENSG00000265181 gene_biotype:miRNA transcript_biotype:miRNA	chr9	139440625	139440711	-	ENSG00000265181	ENST00000582457	NA	NA	NOTCH1	NA	chr9:139430625-139440238	inter
CUST_7103_PI429285431	0.9003489	A	0.92120373	A	0.985648512019128	0	lncRNA	7038-1_{1..1234}	"transcript_id ""ENST00000413763.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413763.1"" | genecode_v17"	chrX	 75122940	 75124173	+	ENSG00000226854.1	ENST00000413763.1	RP11-212D3.4	RP11-212D3.4-001	NA	NA	NA	inter
CUST_46373_PI429285431	5.601694	P	5.683119	P	0.945123654073596	0	lncRNA	50591-1_{1..3000}	"gi|331284185|ref|NR_038150.1| Homo sapiens ubiquitin protein ligase E3 component n-recognin 7 (putative) (UBR7), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|331284185|ref|NR_038150.1| Homo sapiens ubiquitin protein ligase E3 component n-recognin 7 (putative) (UBR7), transcript variant 3, non-coding RNA"	Chr14	 93673401	 93676400	+	55148	NR_038150.1	NA	NA	NA	NA	NA	inter
CUST_11687_PI429285431	1.8466437	A	0.91723204	A	1.90449917110849	0	lncRNA	13265-1_{1..1087}	lnc-EXD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXD1-1:1	chr15	 41455961	 41457047	-	lnc-EXD1-1	lnc-EXD1-1:1	XLOC_011447	linc-INO80	EXD1	"hg19_refFlat_FAM92A1:range=chr8:94712876-947405255'pad=0,hg19_refFlat_FAM92A1:range=chr8:94712876-947405255'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90chr15:41455322-41466708"	NA	inter
CUST_27412_PI429285431	4.928449	P	3.9327533	P	1.99404186568786	0	lncRNA	28977-1_{1..845}	n324580|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039937|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039937|-0.2423560|-0.3034234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324580|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039937|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039937|-0.2423560|-0.3034234	chr6	 16103153	 16103997	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33336_PI429285431	2.7114093	A	1.5977159	A	2.16398935148854	0	lncRNA	34917-1_{1..517}	n340053|AK000203|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2508|NULL|-0.8143810|-0.3283620	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340053|AK000203|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2508|NULL|-0.8143810|-0.3283620	chr4	 56264558	 56265074	+	NA	NA	NA	NA	TMEM165	NA	chr4:56262090-56275055	inter
CUST_48857_PI429285431	0.89384645	A	0.90935576	A	0.989307342764231	0	lncRNA	52693-1_{1..263}	hg19_lincRNAsTranscripts_TCONS_l2_00019021 range=chr3:180774508-180893456 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019021 range=chr3:180774508-180893456 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	180774508	180774770	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8317_PI429285431	0.8953447	A	0.8990099	A	0.997462701351356	0	lncRNA	9902-1_{1..835}	lnc-GLT1D1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GLT1D1-1:4	chr12	129597610	129598444	+	lnc-GLT1D1-1	lnc-GLT1D1-1:4	ENSG00000249196	ENST00000510001	TMEM132D	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90chr12:129587610-129607839"	NA	inner
LNCA_21_P0012191	0.8902058	A	0.90230936	A	0.991645545563525	0	lncRNA	TCONS_l2_00017174	NA	NA	NA	NA	XLOC_l2_009163	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009163), lincRNA [TCONS_l2_00017174]"	chr21:24776083-24776024	hs|21q21.2	Agilent_HUMAN_G3V2	TCONS_l2_00017174	TCONS_l2_00017174	chr21	 24776024	 24776083	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22463_PI429285431	6.780147	P	6.9945927	P	0.861877239237215	0	lncRNA	24051-1_{1..578}	lnc-GPR143-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR143-1:1	chrX	 10006353	 10006930	-	lnc-GPR143-1	lnc-GPR143-1:1	ENSG00000225076.1	WWC3-AS1	WWC3	NA	chrX:9996353-10016694	inner
CUST_7995_PI429285431	0.89705956	A	0.91348994	A	0.988675933858302	0	lncRNA	9606-1_{1..2067}	lnc-DUSP1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DUSP1-4:2	chr5	172386293	172388359	-	lnc-DUSP1-4	lnc-DUSP1-4:2	ENSG00000204758	CTC-308K20.1	ERGIC1	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60chr5:172376293-172379688"	NA	inter
CUST_29241_PI429285431	4.8028545	P	4.565876	P	1.1785218445653	0	lncRNA	30992-1_{1..270}	n332250|GQ131873|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000559149|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000559149|-1.2879900|-0.1445033	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332250|GQ131873|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000559149|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000559149|-1.2879900|-0.1445033	chr1	149130224	149130493	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1184_PI429285431	3.6223638	P	3.2758472	P	1.27148690161763	0	lncRNA	1174-1_{1..342}	"transcript_id ""ENST00000424655.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424655.1"" | genecode_v17"	chr2	181988669	181989010	+	ENSG00000234663.1	ENST00000424655.1	AC104820.2	AC104820.2-005	NA	NA	NA	inter
LNCA_21_P0010655	10.793093	P	10.7077055	P	1.06097267456024	0	lncRNA	TCONS_l2_00001532	NA	NA	NA	NA	XLOC_l2_001118	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001118), lincRNA [TCONS_l2_00001532]"	chr1:150853956-150853897	hs|1q21.3	Agilent_HUMAN_G3V2	TCONS_l2_00001532	TCONS_l2_00001532	chr1	150853897	150853956	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8453_PI429285431	0.88060665	A	0.8843967	A	0.997376385237157	0	lncRNA	10021-1_{1..547}	lnc-ALX4-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALX4-4:3	chr11	 43941936	 43942482	-	lnc-ALX4-4	lnc-ALX4-4:3	ENSG00000244926	ENSG00000244926.2	ALKBH3	NA	chr11:43931936-43941825	inter
CUST_28179_PI429285431	2.2496305	A	2.342639	A	0.937565572537905	0	lncRNA	29807-1_{1..3000}	n325460|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322744|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322744|1.0910400|-0.2295781	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325460|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322744|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322744|1.0910400|-0.2295781	chr2	  6423592	  6426591	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50"	NA	inter
CUST_28162_PI429285431	1.0281068	A	0.887027	A	1.10273015685509	0	lncRNA	29789-1_{1..626}	n325441|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324048|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324048|-1.3121800|-0.3322375	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325441|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324048|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324048|-1.3121800|-0.3322375	chr2	 11445599	 11446224	-	NA	NA	NA	NA	ROCK2	NA	chr2:11435599-11457944	inner
CUST_16005_PI429285431	2.7927406	A	3.150529	A	0.780359927126883	0	lncRNA	17702-1_{1..1158}	lnc-ZNF674-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF674-1:7	chrX	 46186739	 46187896	-	lnc-ZNF674-1	lnc-ZNF674-1:7	XLOC_008151	linc-CXorf36-3	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-62.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.71;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30"	NA	inter
CUST_14523_PI429285431	2.1903257	A	2.9092078	A	0.607568045631519	0	lncRNA	16190-1_{1..528}	lnc-DHRS7-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHRS7-1:4	chr14	 60712263	 60712790	-	lnc-DHRS7-1	lnc-DHRS7-1:4	XLOC_011043	linc-DHRS7	PPM1A	NA	chr14:60712470-60722368	inter
CUST_37829_PI429285431	10.520257	P	10.917614	P	0.759247943065859	0	lncRNA	38921-1_{1..409}	n346351|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1901|NULL|-1.3181200|-0.0389787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346351|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1901|NULL|-1.3181200|-0.0389787	chr16	 15228941	 15229349	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7292_PI429285431	5.446611	P	5.528212	P	0.945008361782102	0	lncRNA	8282-1_{1..330}	"transcript_id ""ENST00000497925.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000497925.2"" | genecode_v17"	chr12	 51235283	 51235612	-	ENSG00000243075.2	ENST00000497925.2	RN7SL519P	RN7SL519P-201	TMPRSS12	NA	chr12:51236701-51245612	inter
CUST_30604_PI429285431	1.8001697	A	2.2296672	A	0.742520364917907	0	lncRNA	32386-1_{1..399}	n335920|X65899|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322784|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322784|3.2853600|-0.0827512	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335920|X65899|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322784|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322784|3.2853600|-0.0827512	chr14	106329408	106329806	-	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106859077	inter
CUST_31962_PI429285431	0.911121	A	0.8982805	A	1.00894008231464	0	lncRNA	33685-1_{1..1743}	n338519|AK058115|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|917|NULL|-0.6595190|-0.1547848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338519|AK058115|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|917|NULL|-0.6595190|-0.1547848	chr14	103474076	103475818	+	NA	NA	NA	NA	CDC42BPB	"hg19_refFlat_CDC42BPB:range=chr14:103400049-1035235105'pad=0,hg19_refFlat_CDC42BPB:range=chr14:103400049-1035235105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr14:103464076-103485968"	NA	inner
CUST_6152_PI429285431	1.2613806	A	1.2777383	A	0.988725742566912	0	lncRNA	6078-1_{1..383}	"transcript_id ""ENST00000597142.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597142.1"" | genecode_v17"	chr18	 36235173	 36235555	-	ENSG00000268566.1	ENST00000597142.1	RP11-687D19.1	RP11-687D19.1-001	NA	NA	NA	inter
CUST_24883_PI429285431	2.4181025	A	2.0731313	A	1.27012562722658	0	lncRNA	26424-1_{1..217}	lnc-C6orf99-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C6orf99-1:1	chr6	159241504	159241720	+	lnc-C6orf99-1	lnc-C6orf99-1:1	ENSG00000233893.1	EZR-AS1	EZR	NA	chr6:159231504-159240456	inter
CUST_51629_PI429285431	0.99787307	A	0.8792505	A	1.08569778483835	0	lncRNA	55199-2_{3001..5356}	hg19_lincRNAsTranscripts_TCONS_l2_00010785 range=chr17:41999868-42016280 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010785 range=chr17:41999868-42016280 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 42002868	 42005223	+	NA	NA	NA	NA	PPY	"hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0,hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.90;hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0,hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0,hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0,hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0,hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0,hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.90chr17:42018172-42019833"	NA	inter
LNCA_21_P0006920	0.88049996	A	0.8812245	A	0.999497913229566	0	lncRNA	TCONS_00018348	NA	NA	NA	NA	XLOC_008633	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008633), lincRNA [TCONS_00018348]"	chr10:119507263-119507322	hs|10q26.11	Agilent_HUMAN_G3V2	TCONS_00018348	TCONS_00018348	chr10	119507263	119507322	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33548_PI429285431	0.8788022	A	0.8814153	A	0.998190376449209	0	lncRNA	35116-1_{1..2022}	n340297|AF049885|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2758|NULL|6.5841200|-0.0747497	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340297|AF049885|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2758|NULL|6.5841200|-0.0747497	chr4	186515037	186517058	-	NA	NA	NA	NA	SORBS2	NA	chr4:186506598-186706442	inner
CUST_48156_PI429285431	0.9304608	A	0.90362954	A	1.01877203238481	0	lncRNA	52021-1_{1..1266}	"gi|341913980|ref|XR_111550.2| PREDICTED: Homo sapiens AGVR6190 (LOC643797), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341913980|ref|XR_111550.2| PREDICTED: Homo sapiens AGVR6190 (LOC643797), misc_RNA"	NA	NA	NA	NA	NA	XR_111550.2	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013041	0.88352644	A	0.8853051	A	0.998767886511718	0	lncRNA	TCONS_l2_00024454	NA	NA	NA	NA	XLOC_l2_012745	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012745), lincRNA [TCONS_l2_00024454]"	chr6:141079122-141088927	hs|6q24.1	Agilent_HUMAN_G3V2	TCONS_l2_00024454	TCONS_l2_00024454	chr6	141079122	141088927	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35232_PI429285431	2.6248398	A	3.534736	P	0.532223382617586	0	lncRNA	36633-1_{1..1141}	n342225|AF116647|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4715|NULL|-1.3987000|-0.4851269	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342225|AF116647|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4715|NULL|-1.3987000|-0.4851269	chr1	 17082618	 17083758	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48009_PI429285431	6.5116544	P	6.452338	P	1.0419719206559	0	lncRNA	51893-1_{1..1217}	"gi|410173335|ref|XR_172201.1| PREDICTED: Homo sapiens puromycin-sensitive aminopeptidase-like protein-like (LOC101060348), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173335|ref|XR_172201.1| PREDICTED: Homo sapiens puromycin-sensitive aminopeptidase-like protein-like (LOC101060348), misc_RNA"	NA	NA	NA	NA	NA	XR_172201.1	NA	NA	NA	NA	NA	Unknown
CUST_3398_PI429285431	3.2440386	P	3.5815344	P	0.791413839973841	0	lncRNA	3371-1_{1..1077}	"transcript_id ""ENST00000423499.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423499.3"" | genecode_v17"	chr9	 39395734	 39396810	-	ENSG00000231140.3	ENST00000423499.3	RP11-347J14.7	RP11-347J14.7-001	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_15445_PI429285431	0.88037497	A	1.2355917	A	0.781752194967087	0	lncRNA	17133-1_{1..831}	lnc-TNC-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNC-3:2	chr9	118505232	118506062	-	lnc-TNC-3	lnc-TNC-3:2	XLOC_007835	linc-TNC-2	NA	NA	NA	inter
LNCA_21_P0006382	1.7398766	A	0.88550305	A	1.80797352268025	0	lncRNA	TCONS_00016822	NA	NA	NA	NA	XLOC_007754	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007754), lincRNA [TCONS_00016822]"	chr9:87653348-87653289	hs|9q21.33	Agilent_HUMAN_G3V2	TCONS_00016822	TCONS_00016822	chr9	 87653289	 87653348	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37515_PI429285431	3.4390016	P	3.925918	P	0.71354859973609	0	lncRNA	38618-1_{1..523}	n345988|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1537|NULL|-1.5776200|-0.2132319	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345988|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1537|NULL|-1.5776200|-0.2132319	chr15	 45119370	 45119892	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006313	0.88059926	A	0.883991	A	0.997651786359176	0	lncRNA	TCONS_00016467	NA	NA	NA	NA	XLOC_007832	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007832), lincRNA [TCONS_00016467]"	chr9:117418307-117418248	hs|9q32	Agilent_HUMAN_G3V2	TCONS_00016467	TCONS_00016467	chr9	117418248	117418307	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34113_PI429285431	4.2374825	P	4.3938894	P	0.897256951201497	0	lncRNA	35636-1_{1..2470}	n340943|AK095568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3408|NULL|0.4027510|-0.1759609	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340943|AK095568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3408|NULL|0.4027510|-0.1759609	chr11	  2419370	  2421839	-	NA	NA	NA	NA	TRPM5	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60chr11:2425745-2431840"	NA	inter
CUST_28361_PI429285431	1.2073357	A	0.90341777	A	1.23449237883533	0	lncRNA	30011-1_{1..296}	n325672|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045409|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045409|-1.3285700|-0.4617336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325672|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045409|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045409|-1.3285700|-0.4617336	chr13	 86362173	 86362468	+	NA	NA	NA	NA	SLITRK6	NA	chr13:86366922-86373483	inner
CUST_46825_PI429285431	8.7845745	P	8.539979	P	1.18476054353653	0	lncRNA	50965-1_{1..1756}	"gi|365192544|ref|NR_045669.1| Homo sapiens PSMC3 interacting protein (PSMC3IP), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|365192544|ref|NR_045669.1| Homo sapiens PSMC3 interacting protein (PSMC3IP), transcript variant 6, non-coding RNA"	Chr17	 40724328	 40726083	-	29893	NR_045669.1	NA	NA	NA	NA	NA	inter
CUST_5146_PI429285431	0.9030432	A	0.9183914	A	0.989417827794977	0	lncRNA	5086-1_{1..417}	"transcript_id ""ENST00000560602.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560602.1"" | genecode_v17"	chr15	 37171963	 37172379	-	ENSG00000259280.1	ENST00000560602.1	RP11-122D10.1	RP11-122D10.1-003	MEIS2	NA	chr15:37183222-37183868	inter
CUST_34749_PI429285431	0.9260168	A	0.92387736	A	1.00148404691332	0	lncRNA	36192-1_{1..1799}	n341654|AK093681|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4125|NULL|-1.1363800|-0.3028575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341654|AK093681|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4125|NULL|-1.1363800|-0.3028575	chr9	  5520912	  5522710	-	NA	NA	NA	NA	PDCD1LG2	"hg19_refFlat_PDCD1LG2:range=chr9:5522547-55699595'pad=0,hg19_refFlat_PDCD1LG2:range=chr9:5522547-55699595'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70chr9:5510912-5532711"	NA	inner
CUST_6199_PI429285431	0.9091814	A	0.93052256	A	0.985316307608464	0	lncRNA	6125-1_{1..459}	"transcript_id ""ENST00000588139.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588139.1"" | genecode_v17"	chr18	 53746812	 53747270	+	ENSG00000267057.1	ENST00000588139.1	RP11-456O19.2	RP11-456O19.2-003	NA	NA	NA	inter
LNCA_21_P0010341	0.9010028	A	1.8694351	A	0.511061104163351	0	lncRNA	ENST00000452326	NA	NA	NA	NA	XLOC_014154	NA	ENST00000452326	NA	NA	"BROAD Institute lincRNA (XLOC_014154), lincRNA [TCONS_00029361]"	chr22:19654675-19654980	hs|22q11.21	Agilent_HUMAN_G3V2	ENST00000452326	ENST00000452326	chr22	 19654675	 19654980	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13298_PI429285431	3.1024683	A	3.5158052	A	0.750884595459464	0	lncRNA	14931-1_{1..997}	lnc-CMC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMC1-2:1	chr3	 27754906	 27755902	+	lnc-CMC1-2	lnc-CMC1-2:1	XLOC_002602	linc-CMC1-2	EOMES	NA	chr3:27757868-27763785	inter
CUST_30597_PI429285431	0.9058044	A	1.0472776	A	0.906592920180265	0	lncRNA	32379-1_{1..384}	n335894|X64234|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322672|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322672|1.4132500|-0.0913062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335894|X64234|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322672|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322672|1.4132500|-0.0913062	chr14	106330425	106330808	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00317287	0.9051919	A	1.6823837	A	0.583501471782122	0	lncRNA	EF565118	NA	EF565118	NA	Hs.626389	XLOC_004018	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004018), lincRNA [TCONS_00007429]"	chr4:93183828-93183769	hs|4q22.1	Agilent_HUMAN_G3V2	EF565118	EF565118	chr4	 93183769	 93183828	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28503_PI429285431	8.985147	P	8.852825	P	1.09605637168911	0	lncRNA	30171-1_{1..297}	n325847|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051076|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051076|-0.9464690|-0.0101507	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325847|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051076|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051076|-0.9464690|-0.0101507	chr10	134082576	134082872	+	NA	NA	NA	NA	STK32C	NA	chr10:134072576-134094447	inner
CUST_12129_PI429285431	0.927703	A	2.29993	A	0.38629448876353	0	lncRNA	13726-1_{1..211}	lnc-ABLIM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABLIM1-1:1	chr10	116581032	116581242	-	lnc-ABLIM1-1	lnc-ABLIM1-1:1	XLOC_008957	linc-ABLIM1-1	FAM160B1	NA	chr10:116581503-116591199	inter
CUST_40940_PI429285431	2.3341885	A	1.7031393	A	1.54869086956481	0	lncRNA	41621-1_{1..559}	n410900|NR_038362|lncRNA|Homosapiens||RefGeneNoncode|NR_038362||-1.1535600|-0.2108410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410900|NR_038362|lncRNA|Homosapiens||RefGeneNoncode|NR_038362||-1.1535600|-0.2108410	chr19	 37341787	 37342345	+	NA	NA	NA	NA	ZNF568	"hg19_refFlat_HECTD4:range=chr12:112600191-1127572915'pad=0,hg19_refFlat_HECTD4:range=chr12:112600191-1127572915'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10chr19:37392621-37394120"	NA	inner
CUST_22998_PI429285431	5.786273	P	6.070796	P	0.821013016463165	0	lncRNA	24572-1_{1..464}	lnc-POLR2L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POLR2L-1:2	chr11	   824390	   824853	-	lnc-POLR2L-1	lnc-POLR2L-1:2	ENSG00000255108.1	AP006621.8	PNPLA2	"hg19_refFlat_PNPLA2:range=chr11:819719-8248625'pad=0,hg19_refFlat_PNPLA2:range=chr11:819719-8248625'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.80chr11:818901-825573"	NA	inner
LNCA_21_P0011885	6.888447	P	7.2687554	P	0.768273341916325	0	lncRNA	TCONS_l2_00014323	NA	NA	NA	NA	XLOC_l2_007829	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007829), lincRNA [TCONS_l2_00014323]"	chr2:241874568-241874627	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_l2_00014323	TCONS_l2_00014323	chr2	241874568	241874627	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38059_PI429285431	0.9145912	A	0.9322003	A	0.987868489371796	0	lncRNA	39137-1_{1..2513}	n377631|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030025||-1.1911000|-0.1590184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377631|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030025||-1.1911000|-0.1590184	chr1	   429710	   432222	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23637_PI429285431	0.8975086	A	0.9089157	A	0.992124377310532	0	lncRNA	25202-1_{1..609}	lnc-CREB5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CREB5-1:1	chr7	 28280076	 28280684	+	lnc-CREB5-1	lnc-CREB5-1:1	ENSG00000234336.1	JAZF1-AS1	NA	"hg19_refFlat_JAZF1:range=chr7:27872419-282201965'pad=0,hg19_refFlat_JAZF1:range=chr7:27872419-282201965'pad=0 3'pad=0 strand=- repeatMasking=none,-100.10"	NA	inter
CUST_15798_PI429285431	1.8462901	A	1.340685	A	1.41971869452589	0	lncRNA	17489-1_{1..836}	lnc-CTD-2210P24.4.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CTD-2210P24.4.1-1:2	chr11	 45745712	 45746547	+	lnc-CTD-2210P24.4.1-1	lnc-CTD-2210P24.4.1-1:2	XLOC_009123	linc-SLC35C1-2	NA	NA	NA	inter
CUST_16161_PI429285431	1.9987088	A	2.127468	A	0.914617735461364	0	lncRNA	17867-1_{1..1862}	lnc-SLC4A1AP-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC4A1AP-1:6	chr2	 27961218	 27963079	+	lnc-SLC4A1AP-1	lnc-SLC4A1AP-1:6	XLOC_001406	linc-MRPL33	NA	NA	NA	inter
CUST_6817_PI429285431	6.9325523	P	6.658229	P	1.20942667131314	0	lncRNA	6765-1_{1..540}	"transcript_id ""ENST00000446404.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446404.1"" | genecode_v17"	chr21	 26258990	 26259529	-	ENSG00000227090.1	ENST00000446404.1	AP000402.3	AP000402.3-001	NA	NA	NA	inter
CUST_19457_PI429285431	2.8311157	A	3.3066525	P	0.719199139587197	0	lncRNA	21116-1_{1..521}	lnc-KIFAP3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIFAP3-2:1	chr1	170501589	170502109	-	lnc-KIFAP3-2	lnc-KIFAP3-2:1	ENSG00000231407.1	RP11-576I22.2	GORAB	NA	chr1:170501263-170511788	inter
CUST_28359_PI429285431	0.905005	A	0.9152844	A	0.992900186481274	0	lncRNA	30008-1_{1..615}	n325668|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045415|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045415|-1.2729300|-0.3408928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325668|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045415|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045415|-1.2729300|-0.3408928	chr13	 87065818	 87066432	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16159_PI429285431	3.9686432	P	4.3042665	P	0.792441697210811	0	lncRNA	17865-1_{1..544}	lnc-DCTD-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCTD-1:3	chr4	183798664	183799207	-	lnc-DCTD-1	lnc-DCTD-1:3	XLOC_004195	linc-AGA-2	NA	NA	NA	inter
CUST_12561_PI429285431	1.4431119	A	1.1332302	A	1.23960604892889	0	lncRNA	14171-1_{1..885}	lnc-PDCD6IP-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDCD6IP-2:4	chr3	 34476785	 34477669	+	lnc-PDCD6IP-2	lnc-PDCD6IP-2:4	XLOC_002612	linc-ARPP21-1	NA	NA	NA	inter
CUST_21247_PI429285431	4.8637276	P	6.2619886	P	0.379386171745855	0	lncRNA	22873-1_{1..919}	lnc-ZSCAN10-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZSCAN10-3:3	chr16	  3184631	  3185549	-	lnc-ZSCAN10-3	lnc-ZSCAN10-3:3	ENSG00000263072.1	RP11-473M20.14	CASP14L	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10chr16:3194244-3194857"	NA	inter
CUST_46291_PI429285431	5.3425407	P	5.536618	P	0.874131782932488	0	lncRNA	50525-2_{3001..4223}	"gi|254553335|ref|NR_028099.1| Homo sapiens DDB1 and CUL4 associated factor 11 (DCAF11), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254553335|ref|NR_028099.1| Homo sapiens DDB1 and CUL4 associated factor 11 (DCAF11), transcript variant 4, non-coding RNA"	Chr14	 24586986	 24588208	+	80344	NR_028099.1	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60"	NA	inter
CUST_26594_PI429285431	0.8972353	A	0.9127007	A	0.989337453872453	0	lncRNA	28097-1_{1..329}	lnc-TNFRSF17-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TNFRSF17-3:1	chr16	 12467526	 12467854	+	lnc-TNFRSF17-3	lnc-TNFRSF17-3:1	ENSG00000260723.1	RP11-165M1.2	SNX29	NA	chr16:12457526-12477756	inner
CUST_5268_PI429285431	0.8865528	A	0.89734966	A	0.992544120933399	0	lncRNA	5208-1_{1..518}	"transcript_id ""ENST00000558141.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558141.1"" | genecode_v17"	chr15	 81846344	 81846861	+	ENSG00000259594.1	ENST00000558141.1	CTD-2034I4.2	CTD-2034I4.2-001	NA	NA	NA	inter
CUST_2206_PI429285431	1.2492839	A	1.2289641	A	1.01418426754813	0	lncRNA	2198-1_{1..568}	"transcript_id ""ENST00000507781.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507781.1"" | genecode_v17"	chr5	 73665201	 73665768	-	ENSG00000248673.1	ENST00000507781.1	CTC-419K13.1	CTC-419K13.1-001	NA	NA	NA	inter
CUST_46998_PI429285431	6.225487	P	7.438748	P	0.431292639451722	0	lncRNA	51097-1_{1..1515}	"gi|310123758|ref|XR_109478.1| PREDICTED: Homo sapiens uncharacterized LOC100127909 (LOC100127909), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123758|ref|XR_109478.1| PREDICTED: Homo sapiens uncharacterized LOC100127909 (LOC100127909), misc_RNA"	NA	NA	NA	NA	NA	XR_109478.1	NA	NA	NA	NA	NA	Unknown
CUST_4235_PI429285431	3.6129477	P	1.8116841	A	3.48525351360148	0	lncRNA	4194-1_{1..3000}	"transcript_id ""ENST00000553202.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553202.1"" | genecode_v17"	chr12	 44112796	 44115795	-	ENSG00000257742.1	ENST00000553202.1	RP11-350F4.2	RP11-350F4.2-001	PUS7L	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80chr12:44122410-44127803"	NA	inter
CUST_49811_PI429285431	1.3206278	A	1.5443934	A	0.856327403925507	0	lncRNA	53566-1_{1..1408}	hg19_lincRNAsTranscripts_TCONS_l2_00025931 range=chr7:63539608-63545689 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025931 range=chr7:63539608-63545689 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 63539608	 63541015	+	NA	NA	NA	NA	ZNF727	NA	chr7:63529608-63538927	inter
CUST_13096_PI429285431	1.336266	A	0.8837197	A	1.36845339299439	0	lncRNA	14720-1_{1..473}	lnc-SOCS6-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOCS6-5:1	chr18	 69465769	 69466241	+	lnc-SOCS6-5	lnc-SOCS6-5:1	XLOC_012712	linc-C18orf55-6	NA	NA	NA	inter
CUST_31038_PI429285431	0.9025589	A	0.90767086	A	0.996462929562353	0	lncRNA	32827-1_{1..268}	n337255|BC127786|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389410|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389410|-1.4238100|-0.3000053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337255|BC127786|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389410|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389410|-1.4238100|-0.3000053	chr10	   988074	   988341	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23200_PI429285431	1.1005701	A	1.7799716	A	0.624424262249966	0	lncRNA	24772-1_{1..1215}	lnc-ARHGAP15-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARHGAP15-3:1	chr2	145277782	145278996	+	lnc-ARHGAP15-3	lnc-ARHGAP15-3:1	ENSG00000238057.2	ZEB2-AS1	ZEB2	NA	chr2:145267782-145277958	inner
CUST_27650_PI429285431	0.90344226	A	0.9169574	A	0.99067576164929	0	lncRNA	29228-1_{1..2719}	n324856|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171145|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171145|-1.3151400|-0.3755482	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324856|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171145|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171145|-1.3151400|-0.3755482	chr21	 25134734	 25137452	+	NA	NA	NA	NA	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90"	NA	inter
CUST_11331_PI429285431	2.579472	A	1.9969752	A	1.49743854924846	0	lncRNA	12894-1_{1..2214}	lnc-C11orf89-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C11orf89-1:4	chr11	  2006673	  2008886	-	lnc-C11orf89-1	lnc-C11orf89-1:4	XLOC_009356	linc-CTSD-3	NA	"hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40"	NA	inter
LNCA_21_P0004881	0.8803618	A	0.8857775	A	0.99625315980312	0	lncRNA	TCONS_00011812	NA	NA	NA	NA	XLOC_005286	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005286), lincRNA [TCONS_00011812]"	chr6:40685453-40685512	hs|6p21.1	Agilent_HUMAN_G3V2	TCONS_00011812	TCONS_00011812	chr6	 40685453	 40685512	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0000994	3.2784615	P	3.9817116	P	0.614187007922994	0	lncRNA	ENST00000425185	XR_110474	XR_110474	NA	NA	XLOC_000293	NA	ENST00000425185	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505840 (LOC100505840), miscRNA [XR_110474]"	chr1:91317816-91319823	hs|1p22.2	Agilent_HUMAN_G3V2	ENST00000425185	ENST00000425185	chr1	 91317816	 91319823	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48956_PI429285431	0.8915699	A	0.8861631	A	1.00375473961532	0	lncRNA	52795-1_{1..632}	hg19_lincRNAsTranscripts_TCONS_l2_00019638 range=chr3:182215996-182229636 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019638 range=chr3:182215996-182229636 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	182215996	182216627	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26332_PI429285431	6.5253263	P	6.4413595	P	1.05992839152893	0	lncRNA	27839-1_{1..588}	lnc-FPGT-TNNI3K-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FPGT-TNNI3K-1:1	chr1	 75087080	 75087667	+	lnc-FPGT-TNNI3K-1	lnc-FPGT-TNNI3K-1:1	ENSG00000234497.1	RP4-612J11.1	C1orf173	"hg19_refFlat_C1orf173:range=chr1:75036801-751392035'pad=0,hg19_refFlat_C1orf173:range=chr1:75036801-751392035'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70chr1:75077080-75097403"	NA	inner
CUST_17035_PI429285431	0.87403077	A	0.87746084	A	0.997625280767969	0	lncRNA	18746-2_{3001..3565}	lnc-EIF2AK4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2AK4-1:3	chr15	 40217988	 40218552	+	lnc-EIF2AK4-1	lnc-EIF2AK4-1:3	XLOC_011218	linc-EIF2AK4	GPR176	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90chr15:40204988-40213093"	NA	inter
LNCA_21_P0009248	5.7635922	P	6.1411123	P	0.769759621363836	0	lncRNA	TCONS_00025394	NA	NA	NA	NA	XLOC_012209	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012209), lincRNA [TCONS_00025394]"	chr17:41393769-41393828	hs|17q21.31	Agilent_HUMAN_G3V2	TCONS_00025394	TCONS_00025394	chr17	 41393769	 41393828	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24492_PI429285431	0.8843967	A	1.3617935	A	0.718272506856003	0	lncRNA	26044-1_{1..497}	lnc-NT5DC3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NT5DC3-1:2	chr12	104160513	104161009	-	lnc-NT5DC3-1	lnc-NT5DC3-1:2	ENSG00000257681.1	RP11-341G23.4	NT5DC3	"hg19_refFlat_STAB2:range=chr12:103981255-1041601145'pad=0,hg19_refFlat_STAB2:range=chr12:103981255-1041601145'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10chr12:104166081-104170684"	NA	inter
LNCA_21_P0012710	1.982514	A	1.5965861	A	1.30669994874006	0	lncRNA	ENST00000504969	NA	NA	NA	NA	XLOC_l2_010528	NA	ENST00000504969	THC2739390	NA	"BROAD Institute lincRNA (XLOC_l2_010528), lincRNA [TCONS_l2_00021500]"	chr4:1126570-1126629	hs|4p16.3	Agilent_HUMAN_G3V2	ENST00000504969	ENST00000504969	chr4	  1126570	  1126629	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003035	0.8791593	A	0.88021266	A	0.9992701329685	0	lncRNA	TCONS_00006247	NA	NA	NA	NA	XLOC_002840	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002840), lincRNA [TCONS_00006247]"	chr3:141493481-141493540	hs|3q23	Agilent_HUMAN_G3V2	TCONS_00006247	TCONS_00006247	chr3	141493481	141493540	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18356_PI429285431	1.7953606	A	3.2279575	P	0.370463445358349	0	lncRNA	20084-1_{1..201}	lnc-RASA1-3:26	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASA1-3:26	chr5	 87732090	 87732290	+	lnc-RASA1-3	lnc-RASA1-3:26	ENSG00000247828	CTC-358I24.1	NA	NA	NA	inter
CUST_16442_PI429285431	3.635732	P	3.5275989	P	1.07783257901604	0	lncRNA	18141-1_{1..280}	lnc-PRL-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,UCSC,"	>lnc-PRL-6:2	chr6	 21490439	 21490718	-	lnc-PRL-6	lnc-PRL-6:2	XLOC_005637	linc-MBOAT1-4	NA	NA	NA	inter
CUST_10667_PI429285431	9.083911	P	9.07814	P	1.0040081636671	0	lncRNA	12200-1_{1..1790}	lnc-POLR2F-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLR2F-1:3	chr22	 38437075	 38438864	+	lnc-POLR2F-1	lnc-POLR2F-1:3	XLOC_014237	linc-PICK1	NA	NA	NA	inter
CUST_20190_PI429285431	4.8597317	P	5.2495065	P	0.763248735825365	0	lncRNA	21833-1_{1..563}	lnc-NPB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPB-1:1	chr17	 79882295	 79882857	+	lnc-NPB-1	lnc-NPB-1:1	ENSG00000264769.1	RP11-498C9.12	SIRT7	"hg19_refFlat_MAFG:range=chr17:79880481-798810615'pad=0,hg19_refFlat_MAFG:range=chr17:79880481-798810615'pad=0 3'pad=0 strand=- repeatMasking=none,-97.70chr17:79872295-79876058"	NA	inner
CUST_12363_PI429285431	4.287331	P	4.5409584	P	0.83878478659725	0	lncRNA	13975-1_{1..216}	lnc-LGALSL-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LGALSL-1:2	chr2	 64550876	 64551091	+	lnc-LGALSL-1	lnc-LGALSL-1:2	XLOC_001496	linc-HSPC159	NA	NA	NA	inter
CUST_13640_PI429285431	0.90295863	A	0.9015348	A	1.00098741091959	0	lncRNA	15278-1_{1..428}	lnc-METTL15-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-METTL15-2:2	chr11	 28548163	 28548590	+	lnc-METTL15-2	lnc-METTL15-2:2	XLOC_009094	linc-FSHB-4	NA	NA	NA	inter
CUST_46301_PI429285431	9.337831	P	8.574686	P	1.69718637283263	0	lncRNA	50532-1_{1..2144}	"gi|383792157|ref|NR_047547.1| Homo sapiens sec1 family domain containing 1 (SCFD1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|383792157|ref|NR_047547.1| Homo sapiens sec1 family domain containing 1 (SCFD1), transcript variant 5, non-coding RNA"	Chr14	 31091460	 31093603	+	23256	NR_047547.1	NA	NA	NA	NA	NA	inter
CUST_2437_PI429285431	6.9257493	P	6.973814	P	0.967232951510133	0	lncRNA	2429-1_{1..557}	"transcript_id ""ENST00000522571.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522571.1"" | genecode_v17"	chr5	173217462	173218018	-	ENSG00000254211.1	ENST00000522571.1	CTB-43E15.4	CTB-43E15.4-001	NA	NA	NA	inter
CUST_18395_PI429285431	5.0555468	P	5.82418	P	0.586973306012579	0	lncRNA	20120-1_{1..340}	lnc-SLC39A11-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC39A11-2:5	chr17	 70115555	 70115894	-	lnc-SLC39A11-2	lnc-SLC39A11-2:5	ENSG00000234899	AC005152.2	SOX9	NA	chr17:70117161-70122561	inter
CUST_32818_PI429285431	6.2617345	P	6.715664	P	0.730051679800682	0	lncRNA	34453-1_{1..513}	n339466|BC004959|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1904|NULL|-1.1582600|-0.3445845	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339466|BC004959|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1904|NULL|-1.1582600|-0.3445845	chr21	 34162983	 34163495	-	NA	NA	NA	NA	C21orf62	NA	chr21:34162984-34173477	inner
LNCA_21_P0007972	0.88340855	A	0.8851805	A	0.998772531809521	0	lncRNA	ENST00000449453	NA	NA	NA	NA	XLOC_010515	NA	ENST00000449453	NA	NA	"BROAD Institute lincRNA (XLOC_010515), lincRNA [TCONS_00021605]"	chr13:114582275-114582334	hs|13q34	Agilent_HUMAN_G3V2	ENST00000449453	ENST00000449453	chr13	114582275	114582334	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004164	0.8834547	A	0.88537556	A	0.998669447277997	0	lncRNA	ENST00000503367	NA	NA	NA	NA	XLOC_004944	NA	ENST00000503367	NA	NA	"BROAD Institute lincRNA (XLOC_004944), lincRNA [TCONS_00009743]"	chr5:102865437-102865378	hs|5q21.2	Agilent_HUMAN_G3V2	ENST00000503367	ENST00000503367	chr5	102865378	102865437	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014398	2.7322812	A	3.1030009	P	0.773396585427908	0	lncRNA	XR_109601	XR_109601	XR_109601	NA	Hs.204945	LOC100128988	uncharacterized LOC100128988	NA	THC2602863	NA	"PREDICTED: Homo sapiens hypothetical LOC100128988 (LOC100128988), miscRNA [XR_109601]"	chr20:39653049-39653108	hs|20q12	Agilent_HUMAN_G3V2	XR_109601	XR_109601	chr20	 39653049	 39653108	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37229_PI429285431	2.2896693	A	2.4284682	A	0.908275015076249	0	lncRNA	38339-1_{1..657}	n345662|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1211|NULL|-1.3098300|-0.3386797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345662|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1211|NULL|-1.3098300|-0.3386797	chr5	 73465063	 73465719	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47302_PI429285431	11.994629	P	11.340538	P	1.57362414611251	0	lncRNA	51368-1_{1..516}	"gi|308082014|ref|NR_036659.1| Homo sapiens ZNFX1 antisense RNA 1 (ZNFX1-AS1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|308082014|ref|NR_036659.1| Homo sapiens ZNFX1 antisense RNA 1 (ZNFX1-AS1), transcript variant 5, non-coding RNA"	Chr20	 47895179	 47895694	+	441951	NR_036659.1	NA	NA	NA	NA	NA	inter
CUST_4206_PI429285431	0.9136513	A	0.920219	A	0.995457963650338	0	lncRNA	4165-1_{1..475}	"transcript_id ""ENST00000539552.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539552.1"" | genecode_v17"	chr12	 26468648	 26469122	+	ENSG00000255858.1	ENST00000539552.1	RP11-612B6.1	RP11-612B6.1-001	NA	NA	NA	inter
CUST_35454_PI429285431	0.90162635	A	1.0191164	A	0.921789954088803	0	lncRNA	36858-3_{6001..7746}	n342528|BX648813|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5024|NULL|0.3531140|-0.2538413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342528|BX648813|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5024|NULL|0.3531140|-0.2538413	chr3	123430798	123432543	+	NA	NA	NA	NA	MYLK	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MYLK:range=chr3:123332952-1235126885'pad=0,hg19_refFlat_MYLK:range=chr3:123332952-1235126885'pad=0 3'pad=0 strand=- repeatMasking=none,-95.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00chr3:123414798-123444293"	NA	inner
CUST_29268_PI429285431	0.8828365	A	0.88118964	A	1.00114216814357	0	lncRNA	31019-1_{1..218}	n332373|EU338227|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000557635|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000557635|-0.8884770|-0.1700070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332373|EU338227|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000557635|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000557635|-0.8884770|-0.1700070	chr4	144917350	144917567	-	NA	NA	NA	NA	GYPB	NA	chr4:144917257-144940496	inner
LNCA_21_P0001823	1.6636422	A	0.92429996	A	1.66941453835102	0	lncRNA	TCONS_00002818	NA	NA	NA	NA	XLOC_001343	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001343), lincRNA [TCONS_00002818]"	chr2:10706153-10706212	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_00002818	TCONS_00002818	chr2	 10706153	 10706212	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43645_PI429285431	6.2248707	P	5.706007	P	1.43282627633942	0	lncRNA	48402-2_{3001..3608}	"gi|302370948|ref|NR_036493.1| Homo sapiens peroxisomal biogenesis factor 19 (PEX19), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|302370948|ref|NR_036493.1| Homo sapiens peroxisomal biogenesis factor 19 (PEX19), transcript variant 3, non-coding RNA"	Chr1	160249599	160250206	-	5824	NR_036493.1	NA	NA	NA	NA	NA	inter
CUST_13040_PI429285431	0.8972418	A	0.90461427	A	0.994902828099358	0	lncRNA	14665-1_{1..378}	lnc-GTPBP8-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GTPBP8-1:6	chr3	112901900	112902277	+	lnc-GTPBP8-1	lnc-GTPBP8-1:6	XLOC_002760	linc-BOC	NA	NA	NA	inter
CUST_748_PI429285431	0.9079802	A	1.2499167	A	0.788981566990368	0	lncRNA	739-1_{1..1139}	"transcript_id ""ENST00000544306.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544306.1"" | genecode_v17"	chr2	 11245443	 11246581	-	ENSG00000145063.10	ENST00000544306.1	AC062028.1	AC062028.1-001	C2orf50	NA	chr2:11242249-11282347	inter
CUST_45091_PI429285431	1.5417259	A	0.90312594	A	1.556817637601	0	lncRNA	49575-1_{1..1503}	"gi|269985699|ref|NR_024346.2| Homo sapiens monooxygenase, DBH-like 2, pseudogene (MOXD2P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|269985699|ref|NR_024346.2| Homo sapiens monooxygenase, DBH-like 2, pseudogene (MOXD2P), non-coding RNA"	NA	NA	NA	NA	NA	NR_024346.2	NA	NA	NA	NA	NA	Unknown
CUST_46972_PI429285431	4.5639405	P	4.9530745	P	0.763587822334522	0	lncRNA	51075-1_{1..3000}	"gi|339275994|ref|NR_040243.1| Homo sapiens metallophosphoesterase 1 (MPPE1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|339275994|ref|NR_040243.1| Homo sapiens metallophosphoesterase 1 (MPPE1), transcript variant 4, non-coding RNA"	Chr18	 11883470	 11886469	-	65258	NR_040243.1	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.70;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00"	NA	inter
CUST_30307_PI429285431	4.0812345	P	5.047175	P	0.511944563528221	0	lncRNA	32083-1_{1..407}	n335214|AY536247|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255241|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255241|2.1175500|-0.1067921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335214|AY536247|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255241|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255241|2.1175500|-0.1067921	chr22	 23603116	 23603522	+	NA	NA	NA	NA	BCR	NA	chr22:23593116-23637298	inner
LNCA_21_P0014453	0.90457386	A	0.92430246	A	0.986418252184621	0	lncRNA	XR_109886	XR_109886	XR_109886	NA	Hs.680448	LOC100506890	uncharacterized LOC100506890	ENST00000425576	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506890 (LOC100506890), miscRNA [XR_109886]"	chr2:110352398-110352339	hs|2q13	Agilent_HUMAN_G3V2	XR_109886	XR_109886	chr2	110352339	110352398	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10279_PI429285431	1.6897937	A	1.8818139	A	0.875379072924424	0	lncRNA	11804-1_{1..486}	lnc-SALL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SALL1-2:1	chr16	 51129133	 51129618	-	lnc-SALL1-2	lnc-SALL1-2:1	XLOC_011936	linc-SNX20-1	NA	NA	NA	inter
LNCA_21_P0013792	8.279996	P	8.042382	P	1.17904109193895	0	lncRNA	THC2665466	NA	NA	NA	NA	XLOC_l2_015628	NA	NA	THC2665466	NA	"BROAD Institute lincRNA (XLOC_l2_015628), lincRNA [TCONS_l2_00030365]"	chrX:134561661-134561720	hs|Xq26.3	Agilent_HUMAN_G3V2	THC2665466	THC2665466	chrX	134561661	134561720	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002606	8.876845	P	8.4942	P	1.30372989055776	0	lncRNA	TCONS_00004875	NA	NA	NA	NA	XLOC_001631	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001631), lincRNA [TCONS_00004875]"	chr2:114265783-114265842	hs|2q13	Agilent_HUMAN_G3V2	TCONS_00004875	TCONS_00004875	chr2	114265783	114265842	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45959_PI429285431	4.0101204	P	3.9352155	P	1.05329160247785	0	lncRNA	50252-1_{1..571}	"gi|300069004|ref|NR_033958.1| Homo sapiens uncharacterized LOC283440 (LOC283440), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300069004|ref|NR_033958.1| Homo sapiens uncharacterized LOC283440 (LOC283440), non-coding RNA"	Chr12	  2870366	  2870936	-	283440	NR_033958.1	NA	NA	NA	"hg19_refFlat_CACNA1C:range=chr12:2162729-28003655'pad=0,hg19_refFlat_CACNA1C:range=chr12:2162729-28003655'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.20"	NA	inter
CUST_49372_PI429285431	1.2681742	A	0.8906803	A	1.29908326178117	0	lncRNA	53186-1_{1..707}	hg19_lincRNAsTranscripts_TCONS_l2_00022491 range=chr5:116790684-116891445 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022491 range=chr5:116790684-116891445 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	116790684	116791390	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009109	0.89227515	A	2.0222611	A	0.456920174909713	0	lncRNA	THC2668465	NA	NA	NA	NA	XLOC_011763	NA	NA	THC2668465	NA	"BROAD Institute lincRNA (XLOC_011763), lincRNA [TCONS_00024870]"	chr16:067538017-067538076	hs|16q22.1	Agilent_HUMAN_G3V2	THC2668465	THC2668465	chr16	 67538017	 67538076	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45576_PI429285431	0.90822965	A	0.9116356	A	0.997641959915148	0	lncRNA	49970-1_{1..1131}	"gi|299890827|ref|NR_033923.1| Homo sapiens long intergenic non-protein coding RNA 619 (LINC00619), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|299890827|ref|NR_033923.1| Homo sapiens long intergenic non-protein coding RNA 619 (LINC00619), non-coding RNA"	Chr10	 44340754	 44341884	+	414260	NR_033923.1	NA	NA	NA	NA	NA	inter
LNCA_33_P3278078	1.6375542	A	1.0326105	A	1.52091939944096	0	lncRNA	XR_108910	XR_108910	XR_108910	100505501	Hs.586401	LOC100505501	uncharacterized LOC100505501	NA	THC2495306	NA	"PREDICTED: Homo sapiens hypothetical LOC100505501, transcript variant 1 (LOC100505501), miscRNA [XR_108910]"	chr8:60034282-60034341	hs|8q12.1	Agilent_HUMAN_G3V2	XR_108910	XR_108910	chr8	 60034282	 60034341	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_345_PI429285431	3.5694802	A	2.6112747	A	1.94289172026206	0	lncRNA	338-1_{1..444}	"transcript_id ""ENST00000594455.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594455.1"" | genecode_v17"	chr1	106143114	106143557	-	ENSG00000230768.2	ENST00000594455.1	RP11-251P6.1	RP11-251P6.1-007	NA	NA	NA	inter
LNCA_19_P00322837	0.8876057	A	0.8984188	A	0.992532948214741	0	lncRNA	ENST00000503048	NA	NA	NA	NA	XLOC_005056	NA	ENST00000503048	NA	NA	"BROAD Institute lincRNA (XLOC_005056), lincRNA [TCONS_00009802]"	chr5:152448338-152448279	hs|5q33.1	Agilent_HUMAN_G3V2	ENST00000503048	ENST00000503048	chr5	152448279	152448338	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011907	5.085932	P	5.767372	P	0.623542585968862	0	lncRNA	TCONS_l2_00014470	NA	NA	NA	NA	XLOC_l2_007931	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007931), lincRNA [TCONS_l2_00014470]"	chr2:21870455-21863716	hs|2p24.1	Agilent_HUMAN_G3V2	TCONS_l2_00014470	TCONS_l2_00014470	chr2	 21863716	 21870455	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10087_PI429285431	1.184047	A	1.1351581	A	1.034467915472	0	lncRNA	11614-1_{1..447}	lnc-KCNV1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNV1-2:1	chr8	112039535	112039981	-	lnc-KCNV1-2	lnc-KCNV1-2:1	XLOC_007182	linc-KCNV1-1	NA	NA	NA	inter
LNCA_21_P0009210	0.8857906	A	1.093157	A	0.866116861522153	0	lncRNA	TCONS_00025271	NA	NA	NA	NA	XLOC_012077	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012077), lincRNA [TCONS_00025271]"	chr17:2472299-2472358	hs|17p13.3	Agilent_HUMAN_G3V2	TCONS_00025271	TCONS_00025271	chr17	  2472299	  2472358	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27162_PI429285431	0.8954799	A	0.90452194	A	0.993752135055372	0	lncRNA	28700-1_{1..2282}	n324289|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043211|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043211|-0.8579670|-0.2655354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324289|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043211|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043211|-0.8579670|-0.2655354	chr6	169515700	169517981	-	NA	NA	NA	NA	NA	"hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_13583_PI429285431	0.9104434	A	0.9201808	A	0.993273275031857	0	lncRNA	15224-1_{1..460}	lnc-RP11-295D22.1.1-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-295D22.1.1-6:3	chr9	121742582	121743041	+	lnc-RP11-295D22.1.1-6	lnc-RP11-295D22.1.1-6:3	XLOC_007542	linc-CEP110-9	NA	NA	NA	inter
LNCA_21_P0014141	2.7936897	A	3.5124593	P	0.607615425062553	0	lncRNA	XR_108572	XR_108572	XR_108572	NA	Hs.662304	EGFLAM-AS2	EGFLAM antisense RNA 2 (non-protein coding)	NA	THC2605301	NA	"PREDICTED: Homo sapiens EGFLAM antisense RNA 2 (non-protein coding) (EGFLAM-AS2), miscRNA [XR_108572]"	chr5:38400615-38400556	hs|5p13.1	Agilent_HUMAN_G3V2	XR_108572	XR_108572	chr5	 38400556	 38400615	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47492_PI429285431	4.6891704	P	4.7983155	P	0.927137294304611	0	lncRNA	51509-2_{3001..5125}	"gi|224028240|ref|NR_026963.1| Homo sapiens TTC28 antisense RNA 1 (TTC28-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224028240|ref|NR_026963.1| Homo sapiens TTC28 antisense RNA 1 (TTC28-AS1), transcript variant 1, non-coding RNA"	Chr22	 28318364	 28320488	+	284900	NR_026963.1	NA	NA	NA	"hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0,hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0 3'pad=0 strand=- repeatMasking=none,-99.60"	NA	inter
LNCA_21_P0014821	4.228941	P	4.4893637	P	0.834843280092619	0	lncRNA	XR_132663	XR_132663	XR_132663	NA	NA	LOC100287865	transmembrane protein 50B-like	NA	NA	NA	"PREDICTED: Homo sapiens transmembrane protein 50B-like (LOC100287865), miscRNA [XR_132663]"	chr19:52614170-52614111	hs|19q13.41	Agilent_HUMAN_G3V2	XR_132663	XR_132663	chr19	 52614111	 52614170	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20664_PI429285431	9.498036	P	9.709747	P	0.863512519676655	0	lncRNA	22303-1_{1..1257}	lnc-KRT80-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KRT80-1:2	chr12	 52604361	 52605617	-	lnc-KRT80-1	lnc-KRT80-1:2	ENSG00000257137.1	RP11-845M18.3	LOC283403	NA	chr12:52599365-52604639	inner
LNCA_21_P0009091	0.8799629	A	2.1418467	A	0.416999107211906	0	lncRNA	TCONS_00024792	NA	NA	NA	NA	XLOC_011618	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011618), lincRNA [TCONS_00024792]"	chr16:433620-433679	hs|16p13.3	Agilent_HUMAN_G3V2	TCONS_00024792	TCONS_00024792	chr16	   433620	   433679	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00801416	0.8795765	A	0.884188	A	0.996808654978648	0	lncRNA	TCONS_00008880	NA	NA	NA	NA	XLOC_003677	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003677), lincRNA [TCONS_00008880]"	chr4:123628410-123628469	hs|4q27	Agilent_HUMAN_G3V2	TCONS_00008880	TCONS_00008880	chr4	123628410	123628469	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006490	5.32341	P	5.7377357	P	0.750370127547006	0	lncRNA	TCONS_00017155	NA	NA	NA	NA	XLOC_007957	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007957), lincRNA [TCONS_00017155]"	chrX:39681476-39681758	hs|Xp11.4	Agilent_HUMAN_G3V2	TCONS_00017155	TCONS_00017155	chrX	 39681476	 39681758	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43430_PI429285431	1.6644397	A	0.8772676	A	1.72568853527947	0	lncRNA	48239-1_{1..3000}	"gi|303305010|ref|NR_036543.1| Homo sapiens peptidylprolyl isomerase E (cyclophilin E) (PPIE), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|303305010|ref|NR_036543.1| Homo sapiens peptidylprolyl isomerase E (cyclophilin E) (PPIE), transcript variant 3, non-coding RNA"	Chr1	 40204517	 40207516	+	10450	NR_036543.1	NA	NA	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.70"	NA	inter
LNCA_21_P0013594	0.8787817	A	0.8820826	A	0.997714605970348	0	lncRNA	TCONS_l2_00028853	NA	NA	NA	NA	XLOC_l2_014865	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014865), lincRNA [TCONS_l2_00028853]"	chr9:79603359-79603418	hs|9q21.2	Agilent_HUMAN_G3V2	TCONS_l2_00028853	TCONS_l2_00028853	chr9	 79603359	 79603418	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40702_PI429285431	5.584321	P	5.7557344	P	0.887972313541578	0	lncRNA	41441-1_{1..1333}	n410264|NR_037175|lncRNA|Homosapiens||RefGeneNoncode|NR_037175||-0.6659130|-0.2720006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410264|NR_037175|lncRNA|Homosapiens||RefGeneNoncode|NR_037175||-0.6659130|-0.2720006	chr6	 32811862	 32813194	+	NA	NA	NA	NA	TAP2	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_TAP1:range=chr6_mann_hap4:4270552-42787895'pad=0,hg19_refFlat_TAP1:range=chr6_mann_hap4:4270552-42787895'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_mcf_hap5:4150233-41584705'pad=0,hg19_refFlat_TAP1:range=chr6_mcf_hap5:4150233-41584705'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_ssto_hap7:4244129-42523665'pad=0,hg19_refFlat_TAP1:range=chr6_ssto_hap7:4244129-42523665'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_apd_hap1:4100360-41085975'pad=0,hg19_refFlat_TAP1:range=chr6_apd_hap1:4100360-41085975'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_dbb_hap3:4094734-41029715'pad=0,hg19_refFlat_TAP1:range=chr6_dbb_hap3:4094734-41029715'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_cox_hap2:4257884-42661215'pad=0,hg19_refFlat_TAP1:range=chr6_cox_hap2:4257884-42661215'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TAP1:range=chr6:32813356-328215935'pad=0,hg19_refFlat_TAP1:range=chr6:32813356-328215935'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_qbl_hap6:4045463-40537005'pad=0,hg19_refFlat_TAP1:range=chr6_qbl_hap6:4045463-40537005'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50chr6:32801862-32806547"	NA	inner
CUST_32629_PI429285431	0.90596646	A	0.9139632	A	0.994472415840024	0	lncRNA	34288-1_{1..1410}	n339253|CR591041|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1685|NULL|-1.0390900|-0.1732118	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339253|CR591041|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1685|NULL|-1.0390900|-0.1732118	chr3	 13118511	 13119920	-	NA	NA	NA	NA	IQSEC1	NA	chr3:13108511-13114617	inter
LNCA_21_P0007439	0.87850374	A	0.8809446	A	0.998309555186943	0	lncRNA	TCONS_00019939	NA	NA	NA	NA	XLOC_009183	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009183), lincRNA [TCONS_00019939]"	chr11:67896576-67896635	hs|11q13.2	Agilent_HUMAN_G3V2	TCONS_00019939	TCONS_00019939	chr11	 67896576	 67896635	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007405	0.8784711	A	0.88077617	A	0.998403522955943	0	lncRNA	TCONS_00020135	NA	NA	NA	NA	XLOC_009564	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009564), lincRNA [TCONS_00020135]"	chr11:115951443-115951384	hs|11q23.3	Agilent_HUMAN_G3V2	TCONS_00020135	TCONS_00020135	chr11	115951384	115951443	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44430_PI429285431	1.5677158	A	0.9066615	A	1.58123774654328	0	lncRNA	49042-1_{1..2488}	"gi|340745342|ref|NR_037840.2| Homo sapiens interleukin 15 (IL15), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|340745342|ref|NR_037840.2| Homo sapiens interleukin 15 (IL15), transcript variant 1, non-coding RNA"	Chr4	142557749	142560236	+	3600	NR_037840.2	NA	NA	NA	NA	NA	inter
CUST_39500_PI429285431	4.756638	P	4.9481707	P	0.875674921593064	0	lncRNA	40447-1_{1..359}	n387234|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011aio.1||1.5125400|-0.1099096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387234|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011aio.1||1.5125400|-0.1099096	chr22	 22569183	 22569541	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38116_PI429285431	7.322989	P	7.497937	P	0.885799445975179	0	lncRNA	39189-1_{1..827}	n381208|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ejf.1||-0.6361140|-0.2456357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381208|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ejf.1||-0.6361140|-0.2456357	chr1	143119060	143119886	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10344_PI429285431	0.9191682	A	0.9273797	A	0.994324389407202	0	lncRNA	11873-1_{1..951}	lnc-KCNAB2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNAB2-2:1	chr1	  5551202	  5552152	+	lnc-KCNAB2-2	lnc-KCNAB2-2:1	XLOC_000037	linc-KCNAB2-1	NA	NA	NA	inter
CUST_31837_PI429285431	5.884804	P	4.5948105	P	2.44526953830336	0	lncRNA	33571-2_{3001..3278}	n338383|AK094186|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|779|NULL|-1.1828100|-0.2766756	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338383|AK094186|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|779|NULL|-1.1828100|-0.2766756	chr14	 73690120	 73690397	+	NA	NA	NA	NA	PSEN1	NA	chr14:73677120-73690399	inner
CUST_831_PI429285431	0.8912301	A	1.7991822	A	0.532941062316118	0	lncRNA	825-1_{1..919}	"transcript_id ""ENST00000588944.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588944.1"" | genecode_v17"	chr2	 35056445	 35057363	+	ENSG00000226994.2	ENST00000588944.1	AC012593.1	AC012593.1-004	NA	NA	NA	inter
CUST_34208_PI429285431	5.05848	P	5.2176747	P	0.895524805708141	0	lncRNA	35721-2_{3001..6000}	n341065|D87470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3531|NULL|3.3258200|-0.2234910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341065|D87470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3531|NULL|3.3258200|-0.2234910	chr11	 73114844	 73117843	-	NA	NA	NA	NA	FAM168A	NA	chr11:73117028-73309228	inner
CUST_8396_PI429285431	0.87815416	A	0.89103436	A	0.991111860816832	0	lncRNA	9974-1_{1..2440}	lnc-NAA35-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NAA35-2:1	chr9	 88771396	 88773835	+	lnc-NAA35-2	lnc-NAA35-2:1	ENSG00000231085	ENST00000420523	NA	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-64.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80"	NA	inter
CUST_48582_PI429285431	0.90122736	A	0.89887553	A	1.00163149377384	0	lncRNA	52430-1_{1..642}	hg19_lincRNAsTranscripts_TCONS_l2_00013455 range=chr2:9250563-9257183 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013455 range=chr2:9250563-9257183 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	  9250563	  9251204	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36884_PI429285431	0.8821371	A	0.891248	A	0.993704704283777	0	lncRNA	38043-1_{1..778}	n345356|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_905|NULL|-1.3347600|-0.3427603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345356|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_905|NULL|-1.3347600|-0.3427603	chr18	 33016991	 33017768	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27325_PI429285431	0.88010305	A	0.8820118	A	0.998677830156861	0	lncRNA	28885-1_{1..2957}	n324480|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041168|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041168|0.0185495|-0.3845510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324480|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041168|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041168|0.0185495|-0.3845510	chr6	 72180869	 72183825	-	NA	NA	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.61;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60"	NA	inter
CUST_9917_PI429285431	0.89798295	A	0.8959768	A	1.00139152448926	0	lncRNA	11441-1_{1..444}	lnc-ALG2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALG2-2:1	chr9	102318325	102318768	-	lnc-ALG2-2	lnc-ALG2-2:1	XLOC_007806	linc-ALG2-2	NA	NA	NA	inter
CUST_42459_PI429285431	0.89764327	A	1.1554362	A	0.836366434962811	0	lncRNA	45197-1_{1..99}	ENST00000391095 ncrna:snoRNA chromosome:GRCh37:11:112473077:112473175:-1 gene:ENSG00000212397 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391095 ncrna:snoRNA chromosome:GRCh37:11:112473077:112473175:-1 gene:ENSG00000212397 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	112473077	112473175	-	ENSG00000212397	ENST00000391095	NA	NA	NA	NA	NA	inter
LNCA_21_P0002123	5.0066347	P	5.4785295	P	0.721017009712727	0	lncRNA	TCONS_00003451	NA	NA	NA	NA	XLOC_002408	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002408), lincRNA [TCONS_00003451]"	chr2:177498113-177497815	hs|2q31.1	Agilent_HUMAN_G3V2	TCONS_00003451	TCONS_00003451	chr2	177497815	177498113	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009583	3.0765886	P	2.9656427	P	1.07993606226772	0	lncRNA	TCONS_00026569	NA	NA	NA	NA	XLOC_012888	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012888), lincRNA [TCONS_00026569]"	chr18:73649734-73649675	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026569	TCONS_00026569	chr18	 73649675	 73649734	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008113	2.545387	A	1.9524764	A	1.50828660925445	0	lncRNA	TCONS_00021896	NA	NA	NA	NA	XLOC_010490	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010490), lincRNA [TCONS_00021896]"	chr13:107284130-107284189	hs|13q33.3	Agilent_HUMAN_G3V2	TCONS_00021896	TCONS_00021896	chr13	107284130	107284189	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18374_PI429285431	1.4769325	A	0.90045047	A	1.4912085427943	0	lncRNA	20102-1_{1..552}	lnc-HSCB-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HSCB-1:14	chr22	 28318006	 28318557	+	lnc-HSCB-1	lnc-HSCB-1:14	ENSG00000235954	TTC28-AS1	PITPNB	NA	chr22:28308006-28315255	inter
CUST_19853_PI429285431	10.587562	P	10.731905	P	0.904791323639941	0	lncRNA	21510-1_{1..2813}	lnc-AC006435.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC006435.1-2:1	chr17	  2292560	  2295372	-	lnc-AC006435.1-2	lnc-AC006435.1-2:1	ENSG00000261903.1	RP1-59D14.6	MNT	"hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20chr17:2287354-2304258"	NA	inner
CUST_12891_PI429285431	4.219352	P	4.9668813	P	0.595622723461702	0	lncRNA	14519-1_{1..553}	lnc-NFATC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NFATC2-1:1	chr20	 49947825	 49948377	-	lnc-NFATC2-1	lnc-NFATC2-1:1	XLOC_013793	linc-KCNG1	NA	NA	NA	inter
CUST_9983_PI429285431	0.9061415	A	0.9099068	A	0.997393495767503	0	lncRNA	11507-1_{1..275}	lnc-NEIL3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NEIL3-3:1	chr4	178881916	178882190	+	lnc-NEIL3-3	lnc-NEIL3-3:1	XLOC_003796	linc-ODZ3-4	NA	NA	NA	inter
CUST_28609_PI429285431	1.0675051	A	0.8847965	A	1.13501282559595	0	lncRNA	30293-1_{1..599}	n325974|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047886|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047886|-1.0851700|-0.3314538	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325974|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047886|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047886|-1.0851700|-0.3314538	chr10	 47944793	 47945391	-	NA	NA	NA	NA	FAM21B	"hg19_refFlat_FAM21B:range=chr10:47894023-479488535'pad=0,hg19_refFlat_FAM21B:range=chr10:47894023-479488535'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_FAM21B:range=chr10:51837886-518927055'pad=0,hg19_refFlat_FAM21B:range=chr10:51837886-518927055'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_FAM21A:range=chr10:51827766-518927055'pad=0,hg19_refFlat_FAM21A:range=chr10:51827766-518927055'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_FAM21C:range=chr10:46222766-462878485'pad=0,hg19_refFlat_FAM21C:range=chr10:46222766-462878485'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20chr10:47934793-47949417"	NA	inner
CUST_22538_PI429285431	3.6622934	P	1.3701417	A	4.89786055465503	0	lncRNA	24125-2_{3001..4305}	lnc-AC003682.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC003682.1-1:2	chr19	 58074024	 58075328	-	lnc-AC003682.1-1	lnc-AC003682.1-1:2	ENSG00000105132.8	ZNF550	ZNF550	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30chr19:58061024-58067725"	NA	inter
CUST_3464_PI429285431	5.273451	P	5.701638	P	0.743195154114039	0	lncRNA	3435-1_{1..530}	"transcript_id ""ENST00000443163.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443163.1"" | genecode_v17"	chr9	 89247062	 89247591	+	ENSG00000232211.1	ENST00000443163.1	RP11-395D3.1	RP11-395D3.1-001	NA	NA	NA	inter
LNCA_21_P0011901	3.157318	P	2.7791724	A	1.29967022145325	0	lncRNA	TCONS_l2_00014410	NA	NA	NA	NA	XLOC_l2_007880	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007880), lincRNA [TCONS_l2_00014410]"	chr2:8027651-8027592	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_l2_00014410	TCONS_l2_00014410	chr2	  8027592	  8027651	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21246_PI429285431	11.604645	P	13.523513	P	0.264461936855739	0	lncRNA	22872-1_{1..664}	lnc-ANO9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANO9-1:1	chr11	   463348	   464011	-	lnc-ANO9-1	lnc-ANO9-1:1	ENSG00000255237.1	RP13-317D12.3	PTDSS2	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20chr11:453348-473899"	NA	inner
CUST_23681_PI429285431	0.9067322	A	0.90670884	A	1.00001619204923	0	lncRNA	25246-1_{1..565}	lnc-TGFBRAP1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TGFBRAP1-3:2	chr2	105719294	105719858	-	lnc-TGFBRAP1-3	lnc-TGFBRAP1-3:2	ENSG00000231851.1	AC104655.2	MRPS9	"hg19_refFlat_MRPS9:range=chr2:105654551-1057162195'pad=0,hg19_refFlat_MRPS9:range=chr2:105654551-1057162195'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.80chr2:105709294-105716418"	NA	inter
CUST_10002_PI429285431	3.0609636	A	3.3364298	P	0.826183297833481	0	lncRNA	11528-1_{1..865}	lnc-PAPPA-AS1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAPPA-AS1-3:3	chr9	118666650	118667514	-	lnc-PAPPA-AS1-3	lnc-PAPPA-AS1-3:3	XLOC_007836	linc-TNC-3	NA	NA	NA	inter
CUST_18635_PI429285431	1.0771043	A	0.9105411	A	1.12238155088001	0	lncRNA	20340-1_{1..3000}	lnc-TRIM26-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRIM26-2:1	chr6	 30294131	 30297130	-	lnc-TRIM26-2	lnc-TRIM26-2:1	ENSG00000231074	HCG18	TRIM39-RPP21	NA	chr6:30297088-30304927	inter
LNCA_21_P0002379	4.5307837	P	4.5657377	P	0.976062881820869	0	lncRNA	TCONS_00004094	NA	NA	NA	NA	XLOC_001929	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001929), lincRNA [TCONS_00004094]"	chr2:554537-554478	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00004094	TCONS_00004094	chr2	   554478	   554537	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002527	0.9016454	A	0.9265733	A	0.982869717128082	0	lncRNA	TCONS_00004522	NA	NA	NA	NA	XLOC_002427	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002427), lincRNA [TCONS_00004522]"	chr2:186815290-186815231	hs|2q32.1	Agilent_HUMAN_G3V2	TCONS_00004522	TCONS_00004522	chr2	186815231	186815290	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36144_PI429285431	2.9890552	P	3.1076481	P	0.921085572664419	0	lncRNA	37422-8_{21001..24000}	n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	chr8	128110803	128113802	-	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00"	NA	inter
CUST_21907_PI429285431	0.9121519	A	0.91232204	A	0.999882074892412	0	lncRNA	23516-1_{1..810}	lnc-B4GALT6-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-B4GALT6-1:3	chr18	 29136520	 29137329	-	lnc-B4GALT6-1	lnc-B4GALT6-1:3	ENSG00000264859.1	RP11-75N4.2	DSG2	NA	chr18:29126520-29128814	inter
CUST_29936_PI429285431	2.0392432	A	0.9953178	A	2.06183002011884	0	lncRNA	31700-1_{1..706}	n334124|M61870|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195997|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195997|2.8718600|-0.3197226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334124|M61870|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195997|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195997|2.8718600|-0.3197226	chr19	 20188829	 20189534	+	NA	NA	NA	NA	ZNF90	NA	chr19:20188803-20231977	inner
CUST_23177_PI429285431	1.0631765	A	1.2376807	A	0.886071976381382	0	lncRNA	24749-1_{1..386}	lnc-TFEC-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TFEC-5:1	chr7	116191890	116192275	-	lnc-TFEC-5	lnc-TFEC-5:1	ENSG00000235427.1	AC006159.5	CAV1	NA	chr7:116181890-116201239	inner
CUST_26861_PI429285431	0.8880423	A	1.3198009	A	0.741357542715341	0	lncRNA	28375-1_{1..795}	n323933|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054989|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054989|-0.9649990|-0.2132547	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323933|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054989|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054989|-0.9649990|-0.2132547	chr9	137499754	137500548	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18339_PI429285431	3.9968781	P	4.523863	P	0.694003623274269	0	lncRNA	20068-1_{1..898}	lnc-LY86-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-LY86-3:1	chr6	  6713944	  6714841	+	lnc-LY86-3	lnc-LY86-3:1	ENSG00000226281	RP1-80N2.2	NA	NA	NA	inter
CUST_28133_PI429285431	1.2569221	A	0.898289	A	1.2822104750391	0	lncRNA	29759-1_{1..839}	n325410|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323748|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323748|-0.4776720|-0.3251760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325410|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323748|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323748|-0.4776720|-0.3251760	chr2	 16268795	 16269633	+	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_46509_PI429285431	5.050909	P	5.7204604	P	0.628702149178886	0	lncRNA	50701-2_{3001..3567}	"gi|380036035|ref|NR_024595.3| Homo sapiens DNM1 pseudogene 35 (DNM1P35), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|380036035|ref|NR_024595.3| Homo sapiens DNM1 pseudogene 35 (DNM1P35), non-coding RNA"	Chr15	 76023011	 76023577	-	100128285	NR_024595.3	NA	NA	NA	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30"	NA	inter
CUST_49166_PI429285431	11.018449	P	10.669445	P	1.2736810067152	0	lncRNA	52992-1_{1..668}	hg19_lincRNAsTranscripts_TCONS_l2_00020780 range=chr4:138969404-138984013 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020780 range=chr4:138969404-138984013 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	138969404	138970071	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50245_PI429285431	3.4279363	P	4.43793	P	0.496548416054932	0	lncRNA	53969-3_{6001..7048}	hg19_lincRNAsTranscripts_TCONS_l2_00029343 range=chr9:68411270-68418932 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029343 range=chr9:68411270-68418932 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 68417270	 68418317	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00"	NA	inter
CUST_3166_PI429285431	2.3528893	A	3.4090428	P	0.480912556431666	0	lncRNA	3145-1_{1..515}	"transcript_id ""ENST00000522354.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522354.1"" | genecode_v17"	chr8	 69760977	 69761491	-	ENSG00000254337.1	ENST00000522354.1	RP11-865I6.2	RP11-865I6.2-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30"	NA	inter
CUST_28523_PI429285431	0.9055525	A	0.8987549	A	1.004722854963	0	lncRNA	30193-1_{1..2014}	n325869|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050704|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050704|1.9428800|-0.3459458	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325869|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050704|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050704|1.9428800|-0.3459458	chr10	122511313	122513326	-	NA	NA	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.40"	NA	inter
CUST_28394_PI429285431	0.8791719	A	0.88747656	A	0.994260184383417	0	lncRNA	30050-1_{1..318}	n325713|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045189|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045189|-0.7969210|-0.3324307	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325713|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045189|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045189|-0.7969210|-0.3324307	chr13	 61696230	 61696547	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43057_PI429285431	2.760007	A	3.2803574	A	0.697202476928037	0	lncRNA	46821-1_{1..121}	ENST00000408279 ncrna:snRNA chromosome:GRCh37:3:110270692:110270812:-1 gene:ENSG00000221206 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408279 ncrna:snRNA chromosome:GRCh37:3:110270692:110270812:-1 gene:ENSG00000221206 gene_biotype:snRNA transcript_biotype:snRNA	chr3	110270692	110270812	-	ENSG00000221206	ENST00000408279	NA	NA	NA	NA	NA	inter
LNCA_21_P0010999	6.3391676	P	5.969296	P	1.29223781622716	0	lncRNA	TCONS_l2_00004779	NA	NA	NA	NA	XLOC_l2_002477	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002477), lincRNA [TCONS_l2_00004779]"	chr11:116523757-116523816	hs|11q23.3	Agilent_HUMAN_G3V2	TCONS_l2_00004779	TCONS_l2_00004779	chr11	116523757	116523816	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45842_PI429285431	2.5356982	A	3.1037416	P	0.674530975227458	0	lncRNA	50174-1_{1..1690}	"gi|379056366|ref|NR_046412.1| Homo sapiens polymerase (DNA-directed), delta 4, accessory subunit (POLD4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379056366|ref|NR_046412.1| Homo sapiens polymerase (DNA-directed), delta 4, accessory subunit (POLD4), transcript variant 4, non-coding RNA"	Chr11	 67118236	 67119925	-	57804	NR_046412.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50"	NA	inter
CUST_30547_PI429285431	13.589826	P	13.646697	P	0.961346884325618	0	lncRNA	32328-1_{1..546}	n335724|CR626325|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000305520|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000305520|1.2804800|-0.1369859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335724|CR626325|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000305520|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000305520|1.2804800|-0.1369859	chr19	 50138549	 50139094	-	NA	NA	NA	NA	PRR12	NA	chr19:50128549-50129696	inner
CUST_38604_PI429285431	3.6959853	P	2.7900987	A	1.87369561006602	0	lncRNA	39611-1_{1..1583}	n383714|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002the.2||-0.9129480|-0.3069574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n383714|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002the.2||-0.9129480|-0.3069574	chr2	111965358	111966940	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44527_PI429285431	7.3015165	P	7.985047	P	0.62263971198503	0	lncRNA	49121-1_{1..1796}	"gi|300796568|ref|NR_034127.1| Homo sapiens uncharacterized LOC100132356 (LOC100132356), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300796568|ref|NR_034127.1| Homo sapiens uncharacterized LOC100132356 (LOC100132356), non-coding RNA"	Chr5	 43065289	 43067084	-	100132356	NR_034127.1	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40"	NA	inter
CUST_51774_PI429285431	0.90107137	A	0.914585	A	0.99067679854284	0	lncRNA	55325-1_{1..446}	hg19_lincRNAsTranscripts_TCONS_l2_00012274 range=chr19:7982404-7983147 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012274 range=chr19:7982404-7983147 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	  7982404	  7982849	+	NA	NA	NA	NA	TIMM44	NA	chr19:7991603-7993147	inner
CUST_12206_PI429285431	0.87660956	A	1.2957572	A	0.747866341428282	0	lncRNA	13807-1_{1..1164}	lnc-GRB7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRB7-1:1	chr17	 37919129	 37920292	+	lnc-GRB7-1	lnc-GRB7-1:1	XLOC_012193	linc-ZPBP2	IKZF3	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90chr17:37921198-37930067"	NA	inter
CUST_25442_PI429285431	3.638795	P	4.257118	P	0.651427712457802	0	lncRNA	26972-1_{1..375}	lnc-CCL2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCL2-3:1	chr17	 32473779	 32474153	+	lnc-CCL2-3	lnc-CCL2-3:1	ENSG00000264791.1	CTC-304I17.2	ACCN1	NA	chr17:32463779-32483825	inner
CUST_37536_PI429285431	5.1951513	P	5.4119225	P	0.860489086540413	0	lncRNA	38641-1_{1..1976}	n346012|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1562|NULL|-1.4566100|-0.2189977	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346012|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1562|NULL|-1.4566100|-0.2189977	chr10	 75464613	 75466588	-	NA	NA	NA	NA	AGAP5	NA	chr10:75454613-75457554	inter
CUST_493_PI429285431	0.8986738	A	0.9113828	A	0.991229479865733	0	lncRNA	484-1_{1..353}	"transcript_id ""ENST00000442108.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442108.1"" | genecode_v17"	chr1	179798744	179799096	-	ENSG00000231966.1	ENST00000442108.1	RP11-12M5.4	RP11-12M5.4-001	TOR1AIP2	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10chr1:179809102-179815259"	NA	inter
CUST_6836_PI429285431	0.8938153	A	0.9085489	A	0.989839417753437	0	lncRNA	6784-1_{1..1754}	"transcript_id ""ENST00000426534.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426534.1"" | genecode_v17"	chr21	 29420733	 29422486	+	ENSG00000232079.1	ENST00000426534.1	AL035610.1	AL035610.1-001	NA	NA	NA	inter
CUST_33958_PI429285431	1.8271987	A	3.0379775	A	0.432035330074683	0	lncRNA	35497-1_{1..1476}	n340763|BC029915|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3226|NULL|-0.6552630|-0.1956567	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340763|BC029915|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3226|NULL|-0.6552630|-0.1956567	chr17	 55678224	 55679699	-	NA	NA	NA	NA	MSI2	NA	chr17:55668224-55695773	inner
CUST_25053_PI429285431	4.9762588	P	4.975526	P	1.00050806727639	0	lncRNA	26591-1_{1..639}	lnc-AGMAT-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGMAT-3:1	chr1	 16075925	 16076563	-	lnc-AGMAT-3	lnc-AGMAT-3:1	ENSG00000224459.1	RP11-169K16.4	TMEM82	NA	chr1:16068917-16074477	inter
LNCA_21_P0004422	2.9880962	P	3.4224803	P	0.740009604218075	0	lncRNA	TCONS_00010403	NA	NA	NA	NA	XLOC_004924	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004924), lincRNA [TCONS_00010403]"	chr5:90598820-90598761	hs|5q14.3	Agilent_HUMAN_G3V2	TCONS_00010403	TCONS_00010403	chr5	 90598761	 90598820	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014289	0.8784089	A	0.8808087	A	0.998337968103386	0	lncRNA	XR_109157	XR_109157	XR_109157	NA	Hs.662213	LOC100505533	uncharacterized LOC100505533	NA	THC2610251	NA	"PREDICTED: Homo sapiens hypothetical LOC100505533 (LOC100505533), miscRNA [XR_109157]"	chr13:111800603-111800544	hs|13q34	Agilent_HUMAN_G3V2	XR_109157	XR_109157	chr13	111800544	111800603	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36594_PI429285431	0.89307	A	0.9053358	A	0.991534035145274	0	lncRNA	37788-1_{1..947}	n345090|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_639|NULL|-1.3277500|-0.2272875	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345090|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_639|NULL|-1.3277500|-0.2272875	chrX	 67771104	 67772050	-	NA	NA	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60"	NA	inter
CUST_24294_PI429285431	5.317731	P	5.5142374	P	0.872661224785279	0	lncRNA	25845-1_{1..502}	lnc-IDS-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IDS-1:2	chrX	148622240	148622741	-	lnc-IDS-1	lnc-IDS-1:2	ENSG00000241769.2	AF011889.4	CXorf40A	NA	chrX:148622519-148632086	inter
CUST_3434_PI429285431	0.8882434	A	0.8941608	A	0.995906771065751	0	lncRNA	3405-1_{1..628}	"transcript_id ""ENST00000449235.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449235.1"" | genecode_v17"	chr9	 75486644	 75487271	-	ENSG00000236849.1	ENST00000449235.1	RP11-151D14.1	RP11-151D14.1-001	NA	NA	NA	inter
CUST_42354_PI429285431	7.617424	P	7.981405	P	0.777017501878988	0	lncRNA	45021-1_{1..72}	ENST00000363753 ncrna:snoRNA chromosome:GRCh37:15:66795581:66795652:-1 gene:ENSG00000200623 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363753 ncrna:snoRNA chromosome:GRCh37:15:66795581:66795652:-1 gene:ENSG00000200623 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 66795581	 66795652	-	ENSG00000200623	ENST00000363753	NA	NA	ZWILCH	NA	chr15:66797431-66805652	inter
CUST_32049_PI429285431	1.9602114	A	2.2896693	A	0.795835466803934	0	lncRNA	33763-1_{1..824}	n338611|AK000205|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1017|NULL|2.9866900|-0.1526400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338611|AK000205|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1017|NULL|2.9866900|-0.1526400	chr13	 28535054	 28535877	-	NA	NA	NA	NA	CDX2	NA	chr13:28536278-28543317	inter
CUST_40750_PI429285431	3.1028934	A	3.066766	P	1.02535778010983	0	lncRNA	41478-1_{1..1911}	n410462|NR_037607|lncRNA|Homosapiens||RefGeneNoncode|NR_037607||4.2562300|-0.2505787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410462|NR_037607|lncRNA|Homosapiens||RefGeneNoncode|NR_037607||4.2562300|-0.2505787	chr1	192989016	192990926	-	NA	NA	NA	NA	TROVE2	NA	chr1:193028552-193039237	inner
LNCA_21_P0001403	0.88201845	A	0.8829797	A	0.999333934193064	0	lncRNA	TCONS_00001231	NA	NA	NA	NA	XLOC_000508	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000508), lincRNA [TCONS_00001231]"	chr1:193325044-193325103	hs|1q31.2	Agilent_HUMAN_G3V2	TCONS_00001231	TCONS_00001231	chr1	193325044	193325103	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009328	0.8821732	A	0.88318753	A	0.999297167123157	0	lncRNA	TCONS_00025685	NA	NA	NA	NA	XLOC_012502	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012502), lincRNA [TCONS_00025685]"	chr17:46037540-46037481	hs|17q21.32	Agilent_HUMAN_G3V2	TCONS_00025685	TCONS_00025685	chr17	 46037481	 46037540	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012126	0.88233984	A	0.8833907	A	0.999271864573188	0	lncRNA	TCONS_l2_00016333	NA	NA	NA	NA	XLOC_l2_008667	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008667), lincRNA [TCONS_l2_00016333]"	chr20:50957174-51044594	hs|20q13.2	Agilent_HUMAN_G3V2	TCONS_l2_00016333	TCONS_l2_00016333	chr20	 50957174	 51044594	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31700_PI429285431	0.88074243	A	0.88196075	A	0.999155881395705	0	lncRNA	33444-1_{1..1785}	n338229|BC020420|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|621|NULL|-1.2650500|-0.4195182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338229|BC020420|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|621|NULL|-1.2650500|-0.4195182	chr14	 27061952	 27063736	-	NA	NA	NA	NA	NOVA1	NA	chr14:27051952-27066960	inner
CUST_24553_PI429285431	3.0127523	A	2.8899193	A	1.08887096515155	0	lncRNA	26103-1_{1..3000}	lnc-FAM211A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM211A-2:1	chr17	 16328356	 16331355	-	lnc-FAM211A-2	lnc-FAM211A-2:1	ENSG00000264087.1	RP11-138I1.1	TRPV2	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_TRPV2:range=chr17:16320983-163402035'pad=0,hg19_refFlat_TRPV2:range=chr17:16320983-163402035'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-55.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10chr17:16318856-16340317"	NA	inner
CUST_3514_PI429285431	0.8839055	A	0.887403	A	0.997578653935035	0	lncRNA	3485-1_{1..224}	"transcript_id ""ENST00000453455.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453455.1"" | genecode_v17"	chr9	111014434	111014657	-	ENSG00000230030.1	ENST00000453455.1	RP11-505C13.1	RP11-505C13.1-001	NA	NA	NA	inter
CUST_47381_PI429285431	6.454126	P	6.12171	P	1.25912018749785	0	lncRNA	51429-1_{1..457}	"gi|310124058|ref|XR_109672.1| PREDICTED: Homo sapiens uncharacterized LOC100506403 (LOC100506403), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124058|ref|XR_109672.1| PREDICTED: Homo sapiens uncharacterized LOC100506403 (LOC100506403), misc_RNA"	NA	NA	NA	NA	NA	XR_109672.1	NA	NA	NA	NA	NA	Unknown
CUST_41819_PI429285431	9.64661	P	9.722327	P	0.948870427927754	0	lncRNA	43417-1_{1..82}	ENST00000385288 ncrna:miRNA chromosome:GRCh37:22:20020662:20020743:1 gene:ENSG00000208023 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385288 ncrna:miRNA chromosome:GRCh37:22:20020662:20020743:1 gene:ENSG00000208023 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 20020662	 20020743	+	ENSG00000208023	ENST00000385288	NA	NA	C22orf25	NA	chr22:20010662-20030743	inner
CUST_44568_PI429285431	4.82934	P	5.7190323	P	0.539729220174159	0	lncRNA	49150-1_{1..2074}	"gi|300796489|ref|NR_034123.1| Homo sapiens uncharacterized LOC100131067 (LOC100131067), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300796489|ref|NR_034123.1| Homo sapiens uncharacterized LOC100131067 (LOC100131067), transcript variant 3, non-coding RNA"	Chr5	 80533384	 80535457	-	100131067	NR_034123.1	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70"	NA	inter
CUST_16542_PI429285431	2.926542	A	3.134148	P	0.865973030454116	0	lncRNA	18243-1_{1..424}	lnc-NAV3-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAV3-1:8	chr12	 78177043	 78177466	+	lnc-NAV3-1	lnc-NAV3-1:8	XLOC_009813	linc-NAV3-1	NA	NA	NA	inter
CUST_7340_PI429285431	2.6591418	A	1.1004493	A	2.9458674144076	0	lncRNA	8868-1_{1..301}	"transcript_id ""ENST00000363006.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000363006.1"" | genecode_v17"	chr22	 20455669	 20455969	-	ENSG00000199876.1	ENST00000363006.1	RN7SKP131	RN7SKP131-201	RIMBP3	NA	chr22:20455991-20461786	inter
CUST_7860_PI429285431	7.4100485	P	7.352559	P	1.04065329565498	0	lncRNA	9482-1_{1..579}	lnc-PAIP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PAIP1-1:1	chr5	 43602880	 43603458	-	lnc-PAIP1-1	lnc-PAIP1-1:1	ENSG00000248092	RP11-159F24.1	NNT	NA	chr5:43592880-43613332	inner
CUST_16982_PI429285431	1.8366263	A	0.89158285	A	1.92524686846198	0	lncRNA	18691-1_{1..2244}	lnc-NCOA3-11:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCOA3-11:1	chr20	 46754028	 46756271	+	lnc-NCOA3-11	lnc-NCOA3-11:1	XLOC_013549	linc-ARFGEF2-6	NA	NA	NA	inter
CUST_33893_PI429285431	1.593914	A	4.9126883	P	0.100218843517056	0	lncRNA	35437-1_{1..2272}	n340685|AK097747|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3148|NULL|1.5125300|-0.1723781	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340685|AK097747|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3148|NULL|1.5125300|-0.1723781	chr17	 42746748	 42749019	+	NA	NA	NA	NA	C17orf104	"hg19_refFlat_CCDC43:range=chr17:42756224-427671215'pad=0,hg19_refFlat_CCDC43:range=chr17:42756224-427671215'pad=0 3'pad=0 strand=- repeatMasking=none,-100.70;hg19_refFlat_CCDC43:range=chr17:42756375-427671215'pad=0,hg19_refFlat_CCDC43:range=chr17:42756375-427671215'pad=0 3'pad=0 strand=- repeatMasking=none,-100.70chr17:42736748-42753167"	NA	inner
CUST_20532_PI429285431	1.7024331	A	1.5986477	A	1.07458931646663	0	lncRNA	22174-1_{1..569}	lnc-RP11-680F20.4.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-680F20.4.1-2:3	chr11	125801200	125801768	-	lnc-RP11-680F20.4.1-2	lnc-RP11-680F20.4.1-2:3	ENSG00000255027.2	RP11-680F20.9	DDX25	NA	chr11:125791200-125793005	inter
CUST_19493_PI429285431	2.0441988	A	2.2352812	A	0.875948283565112	0	lncRNA	21149-1_{1..554}	lnc-NT5E-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NT5E-1:1	chr6	 86340433	 86340986	+	lnc-NT5E-1	lnc-NT5E-1:1	ENSG00000236016.1	RP1-3J17.3	SYNCRIP	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-29.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40chr6:86330433-86350841"	NA	inner
CUST_13102_PI429285431	8.431763	P	8.869513	P	0.738285126820855	0	lncRNA	14726-1_{1..597}	lnc-ZSCAN30-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZSCAN30-2:3	chr18	 32493590	 32494186	-	lnc-ZSCAN30-2	lnc-ZSCAN30-2:3	XLOC_012810	linc-NOL4-2	NA	NA	NA	inter
CUST_30772_PI429285431	11.91008	P	11.711277	P	1.14774567848797	0	lncRNA	32558-1_{1..425}	n336612|Z36831|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327139|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327139|1.6868100|-0.1645793	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336612|Z36831|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327139|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327139|1.6868100|-0.1645793	chr15	 72502750	 72503174	-	NA	NA	NA	NA	PARP6	NA	chr15:72533522-72533556	inner
CUST_37534_PI429285431	3.2111127	P	3.8777957	P	0.629953392950234	0	lncRNA	38638-1_{1..849}	n346009|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1559|NULL|-1.2672100|-0.3381987	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n346009|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1559|NULL|-1.2672100|-0.3381987	chr9	130349339	130350187	+	NA	NA	NA	NA	FAM129B	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60chr9:130339339-130341268"	NA	inter
LNCA_21_P0003335	3.7335043	P	0.92796195	A	6.99121086791851	0	lncRNA	ENST00000509244	NA	NA	NA	NA	XLOC_003457	NA	ENST00000509244	THC2696631	NA	"BROAD Institute lincRNA (XLOC_003457), lincRNA [TCONS_00007475]"	chr4:11791427-11791486	hs|4p15.33	Agilent_HUMAN_G3V2	ENST00000509244	ENST00000509244	chr4	 11791427	 11791486	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003808	5.66636	P	5.4753146	P	1.14159063114239	0	lncRNA	TCONS_00008681	NA	NA	NA	NA	XLOC_004197	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004197), lincRNA [TCONS_00008681]"	chr4:184251435-184251376	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00008681	TCONS_00008681	chr4	184251376	184251435	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26341_PI429285431	2.3975258	A	2.6198254	A	0.857198006500665	0	lncRNA	27848-1_{1..715}	lnc-C15orf48-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C15orf48-1:2	chr15	 45789311	 45790025	+	lnc-C15orf48-1	lnc-C15orf48-1:2	ENSG00000259354.1	RP11-519G16.3	SLC30A4	NA	chr15:45779311-45799479	inner
CUST_12465_PI429285431	0.9040853	A	0.92749864	A	0.983902088331861	0	lncRNA	14077-1_{1..237}	lnc-CELF4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CELF4-3:1	chr18	 36172735	 36172971	-	lnc-CELF4-3	lnc-CELF4-3:1	XLOC_012821	linc-CELF4-3	NA	NA	NA	inter
CUST_25920_PI429285431	0.8992307	A	0.90381694	A	0.996826108152288	0	lncRNA	27439-1_{1..479}	lnc-LEPREL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-LEPREL1-1:1	chr3	188958286	188958764	-	lnc-LEPREL1-1	lnc-LEPREL1-1:1	ENSG00000230115.1	TPRG1-AS2	TPRG1	"hg19_refFlat_TPRG1:range=chr3:188925174-1890386095'pad=0,hg19_refFlat_TPRG1:range=chr3:188925174-1890386095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90chr3:188948286-188968383"	NA	inner
LNCA_21_P0004968	0.90537673	A	0.9263973	A	0.985535285040139	0	lncRNA	TCONS_00012014	NA	NA	NA	NA	XLOC_005534	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005534), lincRNA [TCONS_00012014]"	chr6:165342313-165342372	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012014	TCONS_00012014	chr6	165342313	165342372	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8378_PI429285431	2.683785	A	3.1752183	A	0.7113180607867	0	lncRNA	9956-1_{1..907}	lnc-TLE3-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TLE3-8:1	chr15	 69745597	 69746503	-	lnc-TLE3-8	lnc-TLE3-8:1	ENSG00000245184	ENST00000501805	KIF23	"hg19_refFlat_RPLP1:range=chr15:69745288-697478465'pad=0,hg19_refFlat_RPLP1:range=chr15:69745288-697478465'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00chr15:69735597-69740764"	NA	inner
LNCA_21_P0005300	0.904508	A	0.924342	A	0.986346189355626	0	lncRNA	ENST00000456114	NA	NA	NA	NA	XLOC_006422	NA	ENST00000456114	THC2776183	NA	"BROAD Institute lincRNA (XLOC_006422), lincRNA [TCONS_00013161]"	chr7:43012101-43012042	hs|7p14.1	Agilent_HUMAN_G3V2	ENST00000456114	ENST00000456114	chr7	 43012042	 43012101	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007942	0.90350115	A	0.92257035	A	0.986869208794382	0	lncRNA	ENST00000422527	NA	NA	NA	NA	XLOC_010408	NA	ENST00000422527	THC2670720	NA	"BROAD Institute lincRNA (XLOC_010408), lincRNA [TCONS_00021560]"	chr13:62896465-62896524	hs|13q21.31	Agilent_HUMAN_G3V2	ENST00000422527	ENST00000422527	chr13	 62896465	 62896524	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00321977	2.5171351	A	2.9620197	A	0.734643077789786	0	lncRNA	XR_132900	XR_132900	XR_132900	NA	NA	LOC100507645	uncharacterized LOC100507645	NA	THC2549908	NA	"PREDICTED: Homo sapiens hypothetical LOC100507645 (LOC100507645), miscRNA [XR_132900]"	chr11:65267547-65267488	hs|11q13.1	Agilent_HUMAN_G3V2	XR_132900	XR_132900	chr11	 65267488	 65267547	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17566_PI429285431	1.9962721	A	2.702007	A	0.613130084363059	0	lncRNA	19295-1_{1..203}	lnc-CACNA1S-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CACNA1S-1:1	chr1	201096212	201096414	-	lnc-CACNA1S-1	lnc-CACNA1S-1:1	XLOC_001151	linc-CACNA1S	TMEM9	NA	chr1:201103900-201106312	inter
LNCA_21_P0006436	2.3203309	A	2.4179718	A	0.934559938457172	0	lncRNA	ENST00000424539	NA	NA	NA	NA	XLOC_008084	NA	ENST00000424539	THC2679599	NA	"BROAD Institute lincRNA (XLOC_008084), lincRNA [TCONS_00017025]"	chrX:150088404-150089312	hs|Xq28	Agilent_HUMAN_G3V2	ENST00000424539	ENST00000424539	chrX	150088404	150089312	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7671_PI429285431	4.983534	P	5.096391	P	0.924754935323577	0	lncRNA	9304-1_{1..443}	lnc-ZNF572-1:19	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF572-1:19	chr8	125963058	125963500	+	lnc-ZNF572-1	lnc-ZNF572-1:19	ENSG00000249816	ENSG00000249816.2	NA	NA	NA	inter
CUST_17054_PI429285431	4.0510917	P	4.375476	P	0.79863914944171	0	lncRNA	18763-1_{1..425}	lnc-EMP3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EMP3-1:2	chr19	 48825071	 48825495	+	lnc-EMP3-1	lnc-EMP3-1:2	XLOC_013108	linc-EMP3-1	CCDC114	NA	chr19:48815071-48823332	inter
CUST_11297_PI429285431	0.8938554	A	1.1067824	A	0.862785000138456	0	lncRNA	12860-1_{1..305}	lnc-PGA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PGA3-1:1	chr11	 60944023	 60944327	+	lnc-PGA3-1	lnc-PGA3-1:1	XLOC_009144	linc-PGA3	NA	NA	NA	inter
CUST_50484_PI429285431	4.855676	P	4.995193	P	0.907823034600269	0	lncRNA	54181-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00030285 range=chrX:100741010-100750790 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030285 range=chrX:100741010-100750790 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	100744010	100747009	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_49164_PI429285431	0.88388616	A	0.89046156	A	0.995452650673134	0	lncRNA	52990-1_{1..1384}	hg19_lincRNAsTranscripts_TCONS_l2_00021303 range=chr4:138947025-139052080 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021303 range=chr4:138947025-139052080 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	138947025	138948408	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001073	0.89154667	A	0.9045861	A	0.991002478010034	0	lncRNA	ENST00000428673	NA	NA	NA	NA	XLOC_000614	NA	ENST00000428673	NA	NA	"BROAD Institute lincRNA (XLOC_000614), lincRNA [TCONS_00000417]"	chr1:232321313-232321372	hs|1q42.2	Agilent_HUMAN_G3V2	ENST00000428673	ENST00000428673	chr1	232321313	232321372	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43394_PI429285431	1.4773498	A	1.0948194	A	1.30362633332125	0	lncRNA	48208-1_{1..3000}	"gi|374088006|ref|NR_046176.1| Homo sapiens neuroblastoma breakpoint family, member 3 (NBPF3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|374088006|ref|NR_046176.1| Homo sapiens neuroblastoma breakpoint family, member 3 (NBPF3), transcript variant 4, non-coding RNA"	Chr1	 21766583	 21769582	+	84224	NR_046176.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0002153	2.8484683	A	2.684228	A	1.12057584542507	0	lncRNA	TCONS_00003529	NA	NA	NA	NA	XLOC_001305	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001305), lincRNA [TCONS_00003529]"	chr2:470708-470767	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00003529	TCONS_00003529	chr2	   470708	   470767	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31855_PI429285431	1.4339747	A	1.1584942	A	1.2103971536052	0	lncRNA	33588-1_{1..1791}	n338404|AK094510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|800|NULL|-0.7960440|-0.4130449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338404|AK094510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|800|NULL|-0.7960440|-0.4130449	chr1	181060244	181062034	+	NA	NA	NA	NA	IER5	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10chr1:181057638-181059979"	NA	inter
CUST_24963_PI429285431	0.9136645	A	0.9132163	A	1.0003107168288	0	lncRNA	26501-1_{1..1521}	lnc-EXOSC6-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EXOSC6-3:5	chr16	 70051793	 70053313	-	lnc-EXOSC6-3	lnc-EXOSC6-3:5	ENSG00000196696.7	PDXDC2P	NA	NA	NA	inter
CUST_7439_PI429285431	7.7779613	P	8.765542	P	0.504322780814157	0	lncRNA	9082-1_{1..693}	lnc-PTS-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PTS-1:2	chr11	112162043	112162735	+	lnc-PTS-1	lnc-PTS-1:2	ENSG00000250303	RP11-356J5.12	NA	NA	NA	inter
CUST_29795_PI429285431	9.510622	P	9.906502	P	0.760025642727472	0	lncRNA	31558-1_{1..226}	n333503|BC033879|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000093258|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000093258|-1.0791200|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333503|BC033879|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000093258|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000093258|-1.0791200|-1.0000000	chr4	146859745	146859970	-	NA	NA	NA	NA	ZNF827	NA	chr4:146849745-146859607	inter
CUST_12324_PI429285431	0.89797664	A	0.9107928	A	0.991155856401828	0	lncRNA	13937-1_{1..367}	lnc-GMNC-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GMNC-2:1	chr3	190500806	190501172	-	lnc-GMNC-2	lnc-GMNC-2:1	XLOC_003371	linc-TMEM207-1	NA	NA	NA	inter
CUST_40420_PI429285431	11.10322	P	11.265097	P	0.893861367139074	0	lncRNA	41205-1_{1..1895}	n409286|NR_033489_6|lncRNA|Homosapiens||RefGeneNoncode|NR_033489_6||10.2540000|-0.0895079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409286|NR_033489_6|lncRNA|Homosapiens||RefGeneNoncode|NR_033489_6||10.2540000|-0.0895079	chr6	 31654725	 31656619	-	NA	NA	NA	NA	ABHD16A	NA	chr6:31654726-31671137	inter
LNCA_21_P0007470	5.5911646	P	5.6048284	P	0.990573684448618	0	lncRNA	TCONS_00020144	NA	NA	NA	NA	XLOC_009582	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009582), lincRNA [TCONS_00020144]"	chr11:121934927-121908932	hs|11q24.1	Agilent_HUMAN_G3V2	TCONS_00020144	TCONS_00020144	chr11	121908932	121934927	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26583_PI429285431	5.89061	P	6.2405643	P	0.784608951424459	0	lncRNA	28086-2_{3001..3277}	lnc-SEC16B.1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC16B.1-2:4	chr1	177956341	177956617	-	lnc-SEC16B.1-2	lnc-SEC16B.1-2:4	ENSG00000254154.3	SEC16B	NA	NA	NA	inter
CUST_23636_PI429285431	0.909283	A	1.1268578	A	0.860009916333343	0	lncRNA	25201-1_{1..601}	lnc-CDYL2-6:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDYL2-6:5	chr16	 80574747	 80575347	-	lnc-CDYL2-6	lnc-CDYL2-6:5	ENSG00000259867.1	RP11-525K10.3	DYNLRB2	NA	chr16:80574854-80584541	inter
CUST_45217_PI429285431	1.2587833	A	0.89531773	A	1.2865125850374	0	lncRNA	49678-2_{3001..3727}	"gi|336455065|ref|NR_038881.1| Homo sapiens uncharacterized LOC286190 (LOC286190), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336455065|ref|NR_038881.1| Homo sapiens uncharacterized LOC286190 (LOC286190), non-coding RNA"	Chr8	 71523812	 71524538	+	286190	NR_038881.1	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_LACTB2:range=chr8:71550095-715813555'pad=0,hg19_refFlat_LACTB2:range=chr8:71550095-715813555'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50"	NA	inter
CUST_27906_PI429285431	0.8859617	A	0.88201946	A	1.0027362893657	0	lncRNA	29502-1_{1..2690}	n325145|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331044|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331044|-0.0658824|-0.3412093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325145|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331044|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331044|-0.0658824|-0.3412093	chr2	127863175	127865864	+	NA	NA	NA	NA	BIN1	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10chr2:127853175-127864864"	NA	inner
LNCA_21_P0004315	0.8785002	A	0.8799659	A	0.998984570075687	0	lncRNA	TCONS_00010141	NA	NA	NA	NA	XLOC_004606	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004606), lincRNA [TCONS_00010141]"	chr5:151105721-151105780	hs|5q33.1	Agilent_HUMAN_G3V2	TCONS_00010141	TCONS_00010141	chr5	151105721	151105780	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11208_PI429285431	2.385445	A	2.3212771	A	1.04548176567809	0	lncRNA	12765-1_{1..675}	lnc-TMED5-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMED5-1:8	chr1	 93811281	 93811955	-	lnc-TMED5-1	lnc-TMED5-1:8	XLOC_000918	linc-TMED5	DR1	NA	chr1:93811478-93821360	inter
CUST_7125_PI429285431	0.89046156	A	0.88600624	A	1.00309296587538	0	lncRNA	7062-1_{1..482}	"transcript_id ""ENST00000454307.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454307.1"" | genecode_v17"	chrX	150684023	150684504	+	ENSG00000214915.3	ENST00000454307.1	XX-FW80269A6.1	XX-FW80269A6.1-001	NA	NA	NA	inter
CUST_7494_PI429285431	0.91322654	A	0.90073335	A	1.00869722239308	0	lncRNA	9134-1_{1..545}	lnc-RP1L1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-RP1L1-5:2	chr8	  9761580	  9762124	-	lnc-RP1L1-5	lnc-RP1L1-5:2	ENSG00000253230	RP11-403C10.2	NA	NA	NA	inter
LNCA_21_P0001569	0.88063794	A	0.8814498	A	0.999437419837587	0	lncRNA	TCONS_00001629	NA	NA	NA	NA	XLOC_000964	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000964), lincRNA [TCONS_00001629]"	chr1:112635627-112635568	hs|1p13.2	Agilent_HUMAN_G3V2	TCONS_00001629	TCONS_00001629	chr1	112635568	112635627	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012788	0.88095915	A	0.8818066	A	0.99941276491189	0	lncRNA	ENST00000508414	NA	NA	NA	NA	XLOC_l2_011227	NA	ENST00000508414	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011227), lincRNA [TCONS_l2_00021950]"	chr4:116843254-116843195	hs|4q26	Agilent_HUMAN_G3V2	ENST00000508414	ENST00000508414	chr4	116843195	116843254	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25435_PI429285431	2.2509377	A	1.4782554	A	1.70844321918587	0	lncRNA	26965-1_{1..561}	lnc-CATSPER3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CATSPER3-2:2	chr5	134551106	134551666	+	lnc-CATSPER3-2	lnc-CATSPER3-2:2	ENSG00000250513.1	CTC-349C3.1	NA	NA	NA	inter
CUST_39186_PI429285431	7.435013	P	7.7590847	P	0.798812215571625	0	lncRNA	40161-1_{1..2026}	n385930|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vox.2||2.0481500|-0.1369699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385930|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vox.2||2.0481500|-0.1369699	chr1	 16973907	 16975932	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8984_PI429285431	1.9421185	A	1.0425373	A	1.86552436132371	0	lncRNA	10515-1_{1..2353}	lnc-CX3CR1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CX3CR1-2:3	chr3	 40350814	 40353166	-	lnc-CX3CR1-2	lnc-CX3CR1-2:3	ENSG00000246446	ENST00000500554	EIF1B	NA	chr3:40351173-40353915	inter
CUST_724_PI429285431	0.8886235	A	0.90300477	A	0.990081182437527	0	lncRNA	717-1_{1..602}	"transcript_id ""ENST00000424179.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424179.1"" | genecode_v17"	chr2	  6869300	  6869901	-	ENSG00000205837.3	ENST00000424179.1	LINC00487	LINC00487-002	NA	NA	NA	inter
CUST_7923_PI429285431	1.041677	A	0.907907	A	1.09715701063948	0	lncRNA	9534-1_{1..1791}	lnc-DYRK2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,"	>lnc-DYRK2-4:1	chr12	 68413642	 68415432	+	lnc-DYRK2-4	lnc-DYRK2-4:1	ENSG00000255733	GS1-410F4.2	NA	NA	NA	inter
CUST_39179_PI429285431	7.322168	P	7.6028705	P	0.823190078862579	0	lncRNA	40154-1_{1..1022}	n385919|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vjb.1||7.0857700|-0.1483898	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385919|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vjb.1||7.0857700|-0.1483898	chr1	    16857	    17878	-	NA	NA	NA	NA	LOC100652771	NA	chr1:12190-13639	inter
CUST_40012_PI429285431	0.9094517	A	1.2664998	A	0.780760461323458	0	lncRNA	40873-1_{1..578}	n407161|NR_026578|lncRNA|Homosapiens||RefGeneNoncode|NR_026578||2.4279000|-0.4539940	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407161|NR_026578|lncRNA|Homosapiens||RefGeneNoncode|NR_026578||2.4279000|-0.4539940	chr5	 70370029	 70370606	-	NA	NA	NA	NA	GTF2H2	NA	chr5:70360029-70363497	inter
CUST_17980_PI429285431	1.4307766	A	2.4783843	A	0.483769694371448	0	lncRNA	19713-1_{1..318}	lnc-SIK1-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIK1-5:4	chr21	 44780355	 44780672	-	lnc-SIK1-5	lnc-SIK1-5:4	XLOC_014102	linc-U2AF1-2	NA	NA	NA	inter
CUST_48478_PI429285431	4.36995	P	4.654232	P	0.821150176887738	0	lncRNA	52331-1_{1..352}	hg19_lincRNAsTranscripts_TCONS_l2_00001813 range=chr1:224204522-224218727 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001813 range=chr1:224204522-224218727 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	224204522	224204873	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47334_PI429285431	5.8040833	P	5.833188	P	0.980028289648358	0	lncRNA	51389-2_{3001..6000}	"gi|211971077|ref|NR_024389.1| Homo sapiens uncharacterized LOC100192386 (FLJ16779), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|211971077|ref|NR_024389.1| Homo sapiens uncharacterized LOC100192386 (FLJ16779), non-coding RNA"	Chr20	 61888330	 61891329	+	100192386	NR_024389.1	NA	NA	NA	"hg19_refFlat_NKAIN4:range=chr20:61872849-618858025'pad=0,hg19_refFlat_NKAIN4:range=chr20:61872849-618858025'pad=0 3'pad=0 strand=- repeatMasking=none,-100.70"	NA	inter
CUST_27928_PI429285431	0.8935945	A	0.9167147	A	0.984102026887134	0	lncRNA	29529-1_{1..508}	n325172|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330815|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330815|-1.4184500|-0.3489422	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325172|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330815|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330815|-1.4184500|-0.3489422	chr2	113898541	113899048	+	NA	NA	NA	NA	IL1RN	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-55.90chr2:113888541-113891593"	NA	inter
CUST_9576_PI429285431	1.2536585	A	0.89280397	A	1.28418631523187	0	lncRNA	11092-1_{1..602}	lnc-FAM57A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM57A-1:1	chr17	   624080	   624681	+	lnc-FAM57A-1	lnc-FAM57A-1:1	XLOC_012069	linc-FAM57A-1	VPS53	NA	chr17:614080-618096	inter
CUST_22523_PI429285431	3.6389341	P	4.021799	P	0.766913143429618	0	lncRNA	24111-1_{1..454}	lnc-MED10-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MED10-5:1	chr5	  5176108	  5176561	-	lnc-MED10-5	lnc-MED10-5:1	ENSG00000250866.1	CTD-2297D10.1	ADAMTS16	NA	chr5:5166108-5186327	inner
CUST_40709_PI429285431	3.9051778	P	2.6530404	A	2.38194054018755	0	lncRNA	41449-2_{3001..3690}	n410280|NR_037177|lncRNA|Homosapiens||RefGeneNoncode|NR_037177||-1.0050500|-0.3227207	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410280|NR_037177|lncRNA|Homosapiens||RefGeneNoncode|NR_037177||-1.0050500|-0.3227207	chr6	 32864952	 32865641	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005017	2.0041885	A	0.9192022	A	2.12135533800363	0	lncRNA	TCONS_00012134	NA	NA	NA	NA	XLOC_005664	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005664), lincRNA [TCONS_00012134]"	chr6:28756624-28756565	hs|6p22.1	Agilent_HUMAN_G3V2	TCONS_00012134	TCONS_00012134	chr6	 28756565	 28756624	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00316159	16.699186	P	16.682487	P	1.01164211272692	0	lncRNA	ENST00000415520	NA	NA	NA	NA	XLOC_l2_007876	NA	ENST00000415520	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007876), lincRNA [TCONS_l2_00015692]"	chr2:7217894-7217835	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000415520	ENST00000415520	chr2	  7217835	  7217894	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006557	3.5581348	P	2.5861263	A	1.96156956502257	0	lncRNA	ENST00000449605	NA	AL832542	NA	Hs.246477	XLOC_007942	NA	ENST00000449605	THC2594327	NA	"BROAD Institute lincRNA (XLOC_007942), lincRNA [TCONS_00017411]"	chrX:21916238-21916297	hs|Xp22.11	Agilent_HUMAN_G3V2	ENST00000449605	ENST00000449605	chrX	 21916238	 21916297	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009805	4.743872	P	4.762111	P	0.987437266888583	0	lncRNA	TCONS_00027758	NA	NA	NA	NA	XLOC_013347	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013347), lincRNA [TCONS_00027758]"	chr19:44288600-44288541	hs|19q13.31	Agilent_HUMAN_G3V2	TCONS_00027758	TCONS_00027758	chr19	 44288541	 44288600	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32579_PI429285431	11.66339	P	11.355238	P	1.23812073034968	0	lncRNA	34242-1_{1..592}	n339197|AF086565|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1629|NULL|-1.0758800|-0.1220079	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339197|AF086565|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1629|NULL|-1.0758800|-0.1220079	chr2	240656649	240657240	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33923_PI429285431	1.4585074	A	0.9044362	A	1.46822309410862	0	lncRNA	35464-1_{1..259}	n340720|X97302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3183|NULL|-0.9545440|-0.1285718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340720|X97302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3183|NULL|-0.9545440|-0.1285718	chr17	 46029620	 46029878	+	NA	NA	NA	NA	PNPO	NA	chr17:46019620-46026674	inner
CUST_30552_PI429285431	7.2194796	P	8.188796	P	0.510748016023002	0	lncRNA	32333-1_{1..329}	n335731|V00570|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000320836|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000320836|1.2197400|-0.0792327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335731|V00570|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000320836|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000320836|1.2197400|-0.0792327	chr8	 42038017	 42038345	-	NA	NA	NA	NA	PLAT	NA	chr8:42032236-42050295	inner
CUST_48929_PI429285431	1.1618847	A	1.1007216	A	1.04330653507172	0	lncRNA	52771-1_{1..599}	hg19_lincRNAsTranscripts_TCONS_l2_00019563 range=chr3:146109273-146133271 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019563 range=chr3:146109273-146133271 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	146109273	146109871	-	NA	NA	NA	NA	LOC440981	NA	chr3:146099273-146134390	inter
CUST_17883_PI429285431	0.894512	A	0.9021239	A	0.99473772749818	0	lncRNA	19619-2_{3001..6000}	lnc-OIP5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OIP5-1:1	chr15	 41591773	 41594772	-	lnc-OIP5-1	lnc-OIP5-1:1	XLOC_011448	linc-EXD1	OIP5	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.91;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70chr15:41601466-41608741"	NA	inter
CUST_30442_PI429285431	9.401102	P	9.600461	P	0.870937441243615	0	lncRNA	32222-1_{1..344}	n335578|CR542228|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000269096|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000269096|1.5666500|-0.0306743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335578|CR542228|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000269096|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000269096|1.5666500|-0.0306743	chrX	134185193	134185536	-	NA	NA	NA	NA	FAM127B	NA	chrX:134184962-134186221	inner
LNCA_21_P0003167	9.81235	P	10.227001	P	0.75020095258055	0	lncRNA	TCONS_00006644	NA	NA	NA	NA	XLOC_003239	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003239), lincRNA [TCONS_00006644]"	chr3:127104743-127095096	hs|3q21.3	Agilent_HUMAN_G3V2	TCONS_00006644	TCONS_00006644	chr3	127095096	127104743	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33347_PI429285431	1.2522092	A	0.90183586	A	1.27489050024863	0	lncRNA	34928-1_{1..1058}	n340065|BC034799|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2520|NULL|-1.1372800|-0.2316101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340065|BC034799|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2520|NULL|-1.1372800|-0.2316101	chr4	 58292035	 58293092	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17851_PI429285431	1.3128104	A	0.9106261	A	1.32150721349122	0	lncRNA	19586-1_{1..1072}	lnc-KLHL31-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL31-2:4	chr6	 53658081	 53659152	-	lnc-KLHL31-2	lnc-KLHL31-2:4	XLOC_005748	linc-KLHL31-1	LRRC1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr6:53659778-53668135"	NA	inter
CUST_2921_PI429285431	3.4563344	P	2.9593701	A	1.41124092131995	0	lncRNA	2902-1_{1..650}	"transcript_id ""ENST00000467017.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000467017.1"" | genecode_v17"	chr7	123914733	123915382	-	ENSG00000243574.1	ENST00000467017.1	RP11-264K23.1	RP11-264K23.1-001	NA	NA	NA	inter
CUST_26978_PI429285431	2.7136283	A	2.6496449	A	1.04534807210682	0	lncRNA	28504-1_{1..624}	n324065|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052687|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052687|-0.7992290|-0.3568408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324065|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052687|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052687|-0.7992290|-0.3568408	chr9	 75378350	 75378973	+	NA	NA	NA	NA	TMC1	NA	chr9:75368350-75394234	inner
CUST_51991_PI429285431	0.897247	A	0.9886909	A	0.938582912151699	0	lncRNA	55527-1_{1..2357}	hg19_lincRNAsTranscripts_TCONS_l2_00017188 range=chr21:29815123-29949706 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017188 range=chr21:29815123-29949706 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 29815123	 29817479	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45364_PI429285431	7.3990903	P	7.343903	P	1.03899398345999	0	lncRNA	49801-1_{1..1476}	"gi|189027125|ref|NR_023352.1| Homo sapiens nicotinamide riboside kinase 1 (NMRK1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|189027125|ref|NR_023352.1| Homo sapiens nicotinamide riboside kinase 1 (NMRK1), transcript variant 3, non-coding RNA"	Chr9	 77676116	 77677591	-	54981	NR_023352.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008363	0.89689964	A	1.4254622	A	0.693245110020797	0	lncRNA	TCONS_00022575	NA	NA	NA	NA	XLOC_010891	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010891), lincRNA [TCONS_00022575]"	chr14:86415493-86415552	hs|14q31.3	Agilent_HUMAN_G3V2	TCONS_00022575	TCONS_00022575	chr14	 86415493	 86415552	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10537_PI429285431	1.8219006	A	2.3730936	A	0.682455555701716	0	lncRNA	12066-1_{1..758}	lnc-PFKP-12:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PFKP-12:1	chr10	  3805210	  3805967	+	lnc-PFKP-12	lnc-PFKP-12:1	XLOC_008352	linc-AKR1E2-11	NA	NA	NA	inter
CUST_3900_PI429285431	3.031198	A	2.4735904	A	1.471826484232	0	lncRNA	3869-1_{1..563}	"transcript_id ""ENST00000530389.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530389.1"" | genecode_v17"	chr11	 29540623	 29541185	+	ENSG00000255029.1	ENST00000530389.1	CTD-3012A18.1	CTD-3012A18.1-001	NA	NA	NA	inter
CUST_51671_PI429285431	1.3000829	A	1.2202998	A	1.0568591365845	0	lncRNA	55234-4_{9001..12000}	hg19_lincRNAsTranscripts_TCONS_l2_00011427 range=chr17:66116838-66132517 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011427 range=chr17:66116838-66132517 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 66125838	 66128837	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50"	NA	inter
CUST_34691_PI429285431	0.88061523	A	0.9055775	A	0.982846302041157	0	lncRNA	36143-1_{1..1731}	n341597|AK125258|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4068|NULL|0.2449160|-0.1846153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341597|AK125258|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4068|NULL|0.2449160|-0.1846153	chr8	124457771	124459501	+	NA	NA	NA	NA	WDYHV1	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80chr8:124447771-124454260"	NA	inter
CUST_19788_PI429285431	9.568994	P	9.907805	P	0.790692694371032	0	lncRNA	21446-1_{1..503}	lnc-C10orf35-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf35-1:1	chr10	 71336739	 71337241	+	lnc-C10orf35-1	lnc-C10orf35-1:1	ENSG00000236154.1	RP11-343J3.2	NEUROG3	NA	chr10:71331791-71333210	inter
CUST_36483_PI429285431	1.5165601	A	2.1189191	A	0.658676050630736	0	lncRNA	37686-2_{3001..6000}	n344986|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_535|NULL|-1.3681000|-0.2402240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344986|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_535|NULL|-1.3681000|-0.2402240	chr8	   566150	   569149	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20"	NA	inter
CUST_1003_PI429285431	0.899328	A	0.912102	A	0.991184821457022	0	lncRNA	992-1_{1..554}	"transcript_id ""ENST00000431411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431411.1"" | genecode_v17"	chr2	107138359	107138912	-	ENSG00000231505.1	ENST00000431411.1	AC108868.5	AC108868.5-001	NA	NA	NA	inter
CUST_41070_PI429285431	0.87698483	A	0.880935	A	0.997265695839661	0	lncRNA	41743-1_{1..80}	ENST00000580915 ncrna:miRNA chromosome:GRCh37:2:112078589:112078668:-1 gene:ENSG00000266139 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580915 ncrna:miRNA chromosome:GRCh37:2:112078589:112078668:-1 gene:ENSG00000266139 gene_biotype:miRNA transcript_biotype:miRNA	chr2	112078589	112078668	-	ENSG00000266139	ENST00000580915	NA	NA	NA	NA	NA	inter
CUST_8030_PI429285431	0.8784677	A	1.0760595	A	0.872004932047162	0	lncRNA	9639-1_{1..600}	lnc-HSDL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSDL2-1:1	chr9	114992111	114992710	+	lnc-HSDL2-1	lnc-HSDL2-1:1	ENSG00000245756	ENST00000500353	ROD1	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20chr9:114982111-115002595"	NA	inner
CUST_12715_PI429285431	1.097419	A	1.574654	A	0.718353066506843	0	lncRNA	14334-1_{1..1087}	lnc-COX7C-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COX7C-2:4	chr5	 86045139	 86046225	+	lnc-COX7C-2	lnc-COX7C-2:4	XLOC_004452	linc-RASA1-3	NA	NA	NA	inter
CUST_4716_PI429285431	2.3063202	A	1.9085419	A	1.31747747845165	0	lncRNA	4662-1_{1..1060}	"transcript_id ""ENST00000438128.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438128.1"" | genecode_v17"	chr14	 19650066	 19651125	+	ENSG00000225210.5	ENST00000438128.1	AL589743.1	AL589743.1-006	NA	NA	NA	inter
CUST_31032_PI429285431	2.7427993	A	2.5332718	A	1.15630941662409	0	lncRNA	32821-1_{1..362}	n337245|BC127210|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389219|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389219|-1.0749700|-0.1279384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337245|BC127210|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389219|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389219|-1.0749700|-0.1279384	chr14	 69023215	 69023576	+	NA	NA	NA	NA	RAD51B	NA	chr14:69013215-69033577	inner
CUST_51161_PI429285431	4.603047	P	4.9939528	P	0.762650621866334	0	lncRNA	54784-1_{1..845}	hg19_lincRNAsTranscripts_TCONS_l2_00007711 range=chr14:48663332-48697403 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007711 range=chr14:48663332-48697403 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 48663332	 48664176	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11578_PI429285431	0.887041	A	0.8983356	A	0.992201745251208	0	lncRNA	13157-1_{1..433}	lnc-DHRS7B-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHRS7B-2:3	chr17	 20979753	 20980185	+	lnc-DHRS7B-2	lnc-DHRS7B-2:3	XLOC_012142	linc-DHRS7B-1	NA	NA	NA	inter
CUST_31445_PI429285431	1.114852	A	1.1457396	A	0.978817906878497	0	lncRNA	33213-1_{1..3000}	n337913|BC040537|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|296|NULL|-0.8694670|-0.1808700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337913|BC040537|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|296|NULL|-0.8694670|-0.1808700	chr1	 47691468	 47694467	+	NA	NA	NA	NA	TAL1	"hg19_refFlat_TAL1:range=chr1:47685392-476915605'pad=0,hg19_refFlat_TAL1:range=chr1:47685392-476915605'pad=0 3'pad=0 strand=- repeatMasking=none,-105.50chr1:47681963-47695443"	NA	inner
CUST_986_PI429285431	2.2967384	A	2.0509655	A	1.18572783488458	0	lncRNA	975-1_{1..575}	"transcript_id ""ENST00000545549.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000545549.1"" | genecode_v17"	chr2	104668433	104669007	+	ENSG00000256637.1	ENST00000545549.1	RP11-76I14.1	RP11-76I14.1-002	NA	NA	NA	inter
LNCA_21_P0013561	0.8783369	A	0.8799782	A	0.998862984425153	0	lncRNA	TCONS_l2_00028700	NA	NA	NA	NA	XLOC_l2_014757	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014757), lincRNA [TCONS_l2_00028700]"	chr9:35483126-35483185	hs|9p13.3	Agilent_HUMAN_G3V2	TCONS_l2_00028700	TCONS_l2_00028700	chr9	 35483126	 35483185	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36622_PI429285431	3.4016018	P	3.0736587	A	1.25522248423798	0	lncRNA	37816-1_{1..654}	n345119|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_668|NULL|-1.2915200|-0.2721470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345119|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_668|NULL|-1.2915200|-0.2721470	chr10	 74075874	 74076527	+	NA	NA	NA	NA	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00"	NA	inter
CUST_29264_PI429285431	1.7915046	A	2.4214184	A	0.646215025052255	0	lncRNA	31015-1_{1..379}	n332366|EU392499|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000557709|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000557709|1.5027600|-0.0693652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332366|EU392499|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000557709|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000557709|1.5027600|-0.0693652	chr19	 50339124	 50339502	+	NA	NA	NA	NA	MED25	NA	chr19:50329124-50340237	inner
LNCA_21_P0001615	1.8624951	A	0.8799163	A	1.97599432013902	0	lncRNA	TCONS_00001791	NA	NA	NA	NA	XLOC_001183	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001183), lincRNA [TCONS_00001791]"	chr1:208443248-208442601	hs|1q32.2	Agilent_HUMAN_G3V2	TCONS_00001791	TCONS_00001791	chr1	208442601	208443248	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48320_PI429285431	10.274351	P	9.62441	P	1.56910402489953	0	lncRNA	52178-1_{1..456}	hg19_lincRNAsTranscripts_TCONS_l2_00000179 range=chr1:27533429-27534178 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000179 range=chr1:27533429-27534178 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 27533429	 27533884	+	NA	NA	NA	NA	WDTC1	NA	chr1:27533421-27544178	inter
CUST_31964_PI429285431	3.7589896	P	4.113232	P	0.782280332831188	0	lncRNA	33687-1_{1..709}	n338521|BC032902|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|919|NULL|-1.0024600|-0.3668304	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338521|BC032902|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|919|NULL|-1.0024600|-0.3668304	chr14	103798010	103798718	-	NA	NA	NA	NA	EIF5	NA	chr14:103800493-103808704	inter
CUST_8222_PI429285431	3.9128916	P	3.8951	P	1.01240855247628	0	lncRNA	9813-1_{1..2566}	lnc-RP11-247C2.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RP11-247C2.2.1-1:1	chr15	 74421306	 74423871	-	lnc-RP11-247C2.2.1-1	lnc-RP11-247C2.2.1-1:1	ENSG00000248540	AC010931.2	ISLR2	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00chr15:74421715-74429143"	NA	inter
CUST_7041_PI429285431	0.8898915	A	0.88477015	A	1.00355615749038	0	lncRNA	6986-1_{1..673}	"transcript_id ""ENST00000429281.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429281.1"" | genecode_v17"	chrX	 39164888	 39165560	-	ENSG00000235304.1	ENST00000429281.1	RP11-265P11.2	RP11-265P11.2-002	NA	NA	NA	inter
CUST_21458_PI429285431	2.986665	P	3.6929073	P	0.612914482663023	0	lncRNA	23076-1_{1..495}	lnc-TBX18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBX18-1:1	chr6	 85398299	 85398793	-	lnc-TBX18-1	lnc-TBX18-1:1	ENSG00000233513.1	RP11-132M7.1	NA	NA	NA	inter
CUST_43896_PI429285431	10.076645	P	9.637368	P	1.3559246417386	0	lncRNA	48611-2_{3001..5301}	"gi|385275065|ref|NR_047653.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385275065|ref|NR_047653.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 2, non-coding RNA"	Chr2	 97261892	 97264192	-	55683	NR_047653.1	NA	NA	NA	NA	NA	inter
CUST_9426_PI429285431	0.88082266	A	0.88626456	A	0.996235067555599	0	lncRNA	10932-1_{1..2111}	lnc-OR10H5-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-OR10H5-2:4	chr19	 15946028	 15948138	+	lnc-OR10H5-2	lnc-OR10H5-2:4	XLOC_012981	linc-OR10H4	NA	NA	NA	inter
CUST_23862_PI429285431	6.699576	P	6.6640415	P	1.02493647851303	0	lncRNA	25424-1_{1..792}	lnc-PPIC-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPIC-1:2	chr5	122424891	122425682	-	lnc-PPIC-1	lnc-PPIC-1:2	ENSG00000223652.2	AC106786.1	PRDM6	NA	chr5:122424841-122434990	inner
CUST_7734_PI429285431	3.2304397	P	4.23718	P	0.49766943848362	0	lncRNA	9363-3_{6001..7377}	lnc-PDCD7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDCD7-1:1	chr15	 65392813	 65394189	-	lnc-PDCD7-1	lnc-PDCD7-1:1	ENSG00000246922	ENST00000502113	LOC390595	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr15:65385342-65398697"	NA	inner
CUST_40226_PI429285431	8.52155	P	8.191271	P	1.25725648941097	0	lncRNA	41048-1_{1..657}	n408067|NR_027917|lncRNA|Homosapiens||RefGeneNoncode|NR_027917||3.3242800|-0.1135766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408067|NR_027917|lncRNA|Homosapiens||RefGeneNoncode|NR_027917||3.3242800|-0.1135766	chr9	 90387829	 90388485	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25671_PI429285431	3.054892	A	3.3900404	P	0.792702592616668	0	lncRNA	27200-1_{1..431}	lnc-RP11-1026M7.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RP11-1026M7.2.1-2:1	chr5	177140798	177141228	+	lnc-RP11-1026M7.2.1-2	lnc-RP11-1026M7.2.1-2:1	ENSG00000249849.1	RP11-1101H11.1	FAM153A	NA	chr5:177150365-177150970	inter
CUST_242_PI429285431	2.1258388	A	2.2816236	A	0.89764393798464	0	lncRNA	234-1_{1..620}	"transcript_id ""ENST00000419596.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419596.1"" | genecode_v17"	chr1	 58525811	 58526430	+	ENSG00000235038.1	ENST00000419596.1	RP11-393I23.4	RP11-393I23.4-001	DAB1	NA	chr1:58515811-58555946	inner
CUST_10564_PI429285431	1.2931058	A	0.90334517	A	1.31017600320204	0	lncRNA	12095-1_{1..574}	lnc-ADAMTS9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAMTS9-2:1	chr3	 64878573	 64879146	-	lnc-ADAMTS9-2	lnc-ADAMTS9-2:1	XLOC_003148	linc-ADAMTS9-1	NA	NA	NA	inter
LNCA_21_P0002966	0.8829973	A	0.90343535	A	0.985933297035148	0	lncRNA	THC2740392	NA	NA	NA	NA	XLOC_002685	NA	NA	THC2740392	NA	"BROAD Institute lincRNA (XLOC_002685), lincRNA [TCONS_00006042]"	chr3:064441680-064441739	hs|3p14.1	Agilent_HUMAN_G3V2	THC2740392	THC2740392	chr3	 64441680	 64441739	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30025_PI429285431	5.065032	P	5.21664	P	0.900246505868995	0	lncRNA	31793-1_{1..237}	n334483|U18303|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218451|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218451|-0.8952960|-0.1814640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334483|U18303|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218451|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218451|-0.8952960|-0.1814640	chr16	 10995657	 10995893	+	NA	NA	NA	NA	CIITA	NA	chr16:10985657-11005894	inner
CUST_20552_PI429285431	7.8669286	P	7.835402	P	1.02209309016715	0	lncRNA	22193-1_{1..666}	lnc-AC217773.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC217773.1-1:3	chr17	 44273424	 44274089	+	lnc-AC217773.1-1	lnc-AC217773.1-1:3	ENSG00000214401.4	KANSL1-AS1	KIAA1267	NA	chr17:44263424-44284089	inner
CUST_29049_PI429285431	0.90080434	A	0.9195063	A	0.987120449679572	0	lncRNA	30778-1_{1..255}	n326539|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029185|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029185|-1.2139700|-0.5546700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326539|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029185|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029185|-1.2139700|-0.5546700	chr1	 85837401	 85837655	+	NA	NA	NA	NA	DDAH1	NA	chr1:85827401-85849005	inner
CUST_25263_PI429285431	9.899645	P	9.501043	P	1.3182299008444	0	lncRNA	26794-1_{1..590}	lnc-SCRN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SCRN1-1:1	chr7	 29724389	 29724978	-	lnc-SCRN1-1	lnc-SCRN1-1:1	ENSG00000225264.2	AC007255.7	NA	NA	NA	inter
CUST_8394_PI429285431	1.6623595	A	2.1423671	A	0.716973847038121	0	lncRNA	9972-1_{1..502}	lnc-CA8-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CA8-3:8	chr8	 61325756	 61326257	-	lnc-CA8-3	lnc-CA8-3:8	ENSG00000251396	ENSG00000251396.2	NA	NA	NA	inter
CUST_22899_PI429285431	2.4264905	A	2.7183647	A	0.816840214768573	0	lncRNA	24476-1_{1..847}	lnc-TNN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNN-2:1	chr1	175304425	175305271	+	lnc-TNN-2	lnc-TNN-2:1	ENSG00000260990.1	RP3-518E13.2	TNR	NA	chr1:175294425-175314595	inner
CUST_52124_PI429285431	4.0634766	P	4.1878753	P	0.917386320428348	0	lncRNA	55649-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00018163 range=chr22:20341496-20350456 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018163 range=chr22:20341496-20350456 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 20341496	 20344495	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24040_PI429285431	4.6504	P	3.826439	P	1.7702596735427	0	lncRNA	25592-1_{1..461}	lnc-KRR1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KRR1-2:3	chr12	 76084295	 76084755	-	lnc-KRR1-2	lnc-KRR1-2:3	ENSG00000258077.1	RP11-114H23.1	NA	NA	NA	inter
CUST_33801_PI429285431	7.912113	P	8.292308	P	0.768333732794938	0	lncRNA	35353-1_{1..798}	n340590|AB002439|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3052|NULL|-1.3897900|-0.3738482	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340590|AB002439|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3052|NULL|-1.3897900|-0.3738482	chr5	115166258	115167055	+	NA	NA	NA	NA	ATG12	NA	chr5:115163893-115177054	inner
CUST_35462_PI429285431	7.757656	P	7.623458	P	1.09748254919687	0	lncRNA	36866-1_{1..839}	n342544|BC008667|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5042|NULL|-1.1242800|-0.3394041	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342544|BC008667|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5042|NULL|-1.1242800|-0.3394041	chr20	  3898236	  3899074	+	NA	NA	NA	NA	PANK2	NA	chr20:3888236-3904502	inner
CUST_10895_PI429285431	6.1327715	P	6.1875076	P	0.96277053846592	0	lncRNA	12436-1_{1..761}	lnc-CALM1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CALM1-1:10	chr14	 90924940	 90925700	+	lnc-CALM1-1	lnc-CALM1-1:10	XLOC_010902	linc-C14orf159-3	NA	NA	NA	inter
CUST_147_PI429201921	1.1629641	A	1.8296423	A	0.629955488875728	0	lncRNA	129-1_{1..3000}	TC09001989.hg.1	TCONS_l2_00028819-XLOC_l2_014837 // Broad TUCP // linc-CBWD3-5 chr9:+:70707657-70711592 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:+:70707657-70711592	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00028819-XLOC_l2_014837	linc-CBWD3-5	chr9	 70707657	 70711592	+	NA	NA	NA	NA	PRDM16	NA	chr1:2985742-2988596	Unknown
LNCA_21_P0003579	11.578741	P	11.467484	P	1.08016896272542	0	lncRNA	TCONS_00008000	NA	NA	NA	NA	XLOC_003463	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003463), lincRNA [TCONS_00008000]"	chr4:14063961-14094861	hs|4p15.33	Agilent_HUMAN_G3V2	TCONS_00008000	TCONS_00008000	chr4	 14063961	 14094861	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42892_PI429285431	10.360007	P	10.265344	P	1.0678159471455	0	lncRNA	45983-1_{1..133}	ENST00000365361 ncrna:snoRNA chromosome:GRCh37:X:100077609:100077741:-1 gene:ENSG00000202231 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365361 ncrna:snoRNA chromosome:GRCh37:X:100077609:100077741:-1 gene:ENSG00000202231 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	100077609	100077741	-	ENSG00000202231	ENST00000365361	NA	NA	CSTF2	NA	chrX:100075348-100087741	inner
LNCA_21_P0013281	2.7232544	A	3.168886	P	0.734262792064402	0	lncRNA	BC013942	NA	BC013942	NA	Hs.205745	XLOC_l2_013730	NA	NA	THC2617046	NA	"BROAD Institute lincRNA (XLOC_l2_013730), lincRNA [TCONS_l2_00026398]"	chr7:17473833-17473774	hs|7p21.1	Agilent_HUMAN_G3V2	BC013942	BC013942	chr7	 17473774	 17473833	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8043_PI429285431	5.887045	P	5.886157	P	1.00061570416438	0	lncRNA	9652-1_{1..1565}	lnc-GFI1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GFI1B-1:1	chr9	135809013	135810577	+	lnc-GFI1B-1	lnc-GFI1B-1:1	ENSG00000244912	ENST00000499608	TSC1	NA	chr9:135799013-135820020	inner
CUST_4447_PI429285431	1.1625801	A	1.8561083	A	0.618339811113768	0	lncRNA	4397-1_{1..480}	"transcript_id ""ENST00000535614.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535614.1"" | genecode_v17"	chr12	122237337	122237816	-	ENSG00000212694.4	ENST00000535614.1	AC084018.1	AC084018.1-005	SETD1B	NA	chr12:122242638-122249348	inter
CUST_42_PI429201921	0.9033524	A	0.9229731	A	0.986492029737495	0	lncRNA	43-1_{1..1340}	TC01006141.hg.1	TCONS_l2_00001794-XLOC_l2_001325 // Broad TUCP // linc-DUSP10-7 chr1:-:222683785-222685126 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:222683785-222685126	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00001794-XLOC_l2_001325	linc-DUSP10-7	chr1	222683785	222685126	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25662_PI429285431	5.181429	P	5.646335	P	0.724518282333219	0	lncRNA	27191-1_{1..2322}	lnc-THTPA-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-THTPA-2:3	chr14	 24027904	 24030225	+	lnc-THTPA-2	lnc-THTPA-2:3	ENSG00000157306.10	RP11-66N24.4	AP1G2	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_AP1G2:range=chr14:24028958-240365235'pad=0,hg19_refFlat_AP1G2:range=chr14:24028958-240365235'pad=0 3'pad=0 strand=- repeatMasking=none,-96.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20chr14:24028777-24037279"	NA	inter
CUST_32090_PI429285431	0.911113	A	0.92338336	A	0.991530901157892	0	lncRNA	33796-1_{1..2314}	n338653|AK095147|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1067|NULL|-1.0987700|-0.4004258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338653|AK095147|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1067|NULL|-1.0987700|-0.4004258	chr13	 37417669	 37419982	+	NA	NA	NA	NA	SMAD9	NA	chr13:37418968-37429983	inner
CUST_7242_PI429285431	0.8966985	A	0.91355693	A	0.988382635589971	0	lncRNA	7883-1_{1..289}	"transcript_id ""ENST00000466169.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000466169.2"" | genecode_v17"	chr7	 79947569	 79947857	+	ENSG00000240347.2	ENST00000466169.2	RN7SL35P	RN7SL35P-201	NA	NA	NA	inter
LNCA_21_P0003026	1.9936535	A	2.5978765	A	0.657825573358619	0	lncRNA	TCONS_00006200	NA	NA	NA	NA	XLOC_002796	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002796), lincRNA [TCONS_00006200]"	chr3:125965876-125965935	hs|3q21.3	Agilent_HUMAN_G3V2	TCONS_00006200	TCONS_00006200	chr3	125965876	125965935	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43593_PI429285431	1.2498035	A	2.0503154	A	0.574145421901319	0	lncRNA	48357-1_{1..3000}	"gi|410170411|ref|XR_110828.2| PREDICTED: Homo sapiens uncharacterized LOC284561 (LOC284561), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410170411|ref|XR_110828.2| PREDICTED: Homo sapiens uncharacterized LOC284561 (LOC284561), misc_RNA"	Chr1	147751386	147754385	+	284561	XR_110828.3	NA	NA	NA	NA	NA	inter
LNCA_21_P0005276	3.9745107	P	8.234694	M	0.052186364063098	0	lncRNA	BC013024	NA	BC013024	NA	NA	LOC154822	uncharacterized LOC154822	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006322), lincRNA [TCONS_00013109]"	chr7:158815312-158815371	hs|7q36.3	Agilent_HUMAN_G3V2	BC013024	BC013024	chr7	158815312	158815371	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49373_PI429285431	1.6113303	A	0.92078567	A	1.61389266205829	0	lncRNA	53187-1_{1..683}	hg19_lincRNAsTranscripts_TCONS_l2_00023516 range=chr5:116790820-116814943 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023516 range=chr5:116790820-116814943 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	116790820	116791502	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38370_PI429285431	0.885186	A	0.90591156	A	0.985736833173697	0	lncRNA	39411-2_{3001..3327}	n382181|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001xqo.1||-0.7546410|-0.3801802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382181|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001xqo.1||-0.7546410|-0.3801802	chr14	 75295223	 75295549	+	NA	NA	NA	NA	YLPM1	NA	chr14:75282223-75304013	inner
CUST_45284_PI429285431	2.1605592	A	2.8761327	A	0.608963008797156	0	lncRNA	49732-1_{1..979}	"gi|386268033|ref|NR_047684.1| Homo sapiens transmembrane protein 249 (TMEM249), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|386268033|ref|NR_047684.1| Homo sapiens transmembrane protein 249 (TMEM249), transcript variant 3, non-coding RNA"	NW_003315924.1	   122485	   123463	-	340393	NR_047684.2	NA	NA	NA	NA	NA	Unknown
CUST_8239_PI429285431	0.90028596	A	0.8974208	A	1.00198795093545	0	lncRNA	9829-1_{1..1822}	lnc-ZNF507-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ZNF507-4:2	chr19	 32537479	 32539300	+	lnc-ZNF507-4	lnc-ZNF507-4:2	ENSG00000248887	XLOC_013038	NA	NA	NA	inter
CUST_18153_PI429285431	1.6676679	A	2.0981805	A	0.741998101171915	0	lncRNA	19887-1_{1..798}	lnc-C11orf89-2:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C11orf89-2:14	chr11	  2017309	  2018106	-	lnc-C11orf89-2	lnc-C11orf89-2:14	ENSG00000130600	H19	NA	NA	NA	inter
CUST_7532_PI429285431	2.0688329	A	2.2026765	A	0.911400078541139	0	lncRNA	9170-1_{1..3000}	lnc-NR2C2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NR2C2-1:1	chr3	 15114522	 15117521	+	lnc-NR2C2-1	lnc-NR2C2-1:1	ENSG00000244821	ENST00000500283	MRPS25	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZFYVE20:range=chr3:15115289-151376275'pad=0,hg19_refFlat_ZFYVE20:range=chr3:15115289-151376275'pad=0 3'pad=0 strand=- repeatMasking=none,-99.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70chr3:15104522-15106816"	NA	inner
CUST_17351_PI429285431	5.836944	P	5.9970665	P	0.894949077101562	0	lncRNA	19071-1_{1..347}	lnc-THBS1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THBS1-2:1	chr15	 39739846	 39740192	+	lnc-THBS1-2	lnc-THBS1-2:1	XLOC_011216	linc-THBS1-2	NA	NA	NA	inter
CUST_24689_PI429285431	3.371586	P	3.6354756	P	0.832839500192921	0	lncRNA	26236-1_{1..731}	lnc-PTTG1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTTG1-2:1	chr5	160066143	160066873	+	lnc-PTTG1-2	lnc-PTTG1-2:1	ENSG00000253687.1	CTC-348L5.1	ATP10B	NA	chr5:160056143-160076190	inner
CUST_49446_PI429285431	1.9737098	A	1.5373609	A	1.35317544214764	0	lncRNA	53245-1_{1..378}	hg19_lincRNAsTranscripts_TCONS_l2_00022708 range=chr5:180708641-180720947 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022708 range=chr5:180708641-180720947 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	180708641	180709018	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010420	3.0911589	P	3.7263293	P	0.64386476192885	0	lncRNA	TCONS_00029613	NA	NA	NA	NA	XLOC_014264	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014264), lincRNA [TCONS_00029613]"	chr22:44736146-44740361	hs|22q13.31	Agilent_HUMAN_G3V2	TCONS_00029613	TCONS_00029613	chr22	 44736146	 44740361	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005322	1.4896126	A	4.244233	P	0.148175579000178	0	lncRNA	ENST00000485282	NA	NA	NA	NA	XLOC_006555	NA	ENST00000485282	NA	NA	"BROAD Institute lincRNA (XLOC_006555), lincRNA [TCONS_00013221]"	chr7:106256185-106256126	hs|7q22.3	Agilent_HUMAN_G3V2	ENST00000485282	ENST00000485282	chr7	106256126	106256185	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25090_PI429285431	4.522972	P	4.846884	P	0.798900645467208	0	lncRNA	26627-1_{1..537}	lnc-KRAS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-KRAS-1:1	chr12	 25745429	 25745965	-	lnc-KRAS-1	lnc-KRAS-1:1	ENSG00000257009.1	RP11-685B13.2	IFLTD1	NA	chr12:25735429-25755862	inner
CUST_3234_PI429285431	3.389232	P	3.842763	P	0.730253361909141	0	lncRNA	3213-1_{1..261}	"transcript_id ""ENST00000522598.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522598.1"" | genecode_v17"	chr8	 94271895	 94272155	+	ENSG00000254089.1	ENST00000522598.1	RP11-388K12.2	RP11-388K12.2-001	NA	NA	NA	inter
CUST_45417_PI429285431	2.4322681	A	2.1207688	A	1.24099671795513	0	lncRNA	49841-2_{3001..3328}	"gi|396578188|ref|NR_073037.1| Homo sapiens stomatin (STOM), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|396578188|ref|NR_073037.1| Homo sapiens stomatin (STOM), transcript variant 5, non-coding RNA"	Chr9	124104266	124104593	-	2040	NR_073037.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50"	NA	inter
CUST_1046_PI429285431	1.2929559	A	1.1331998	A	1.11709826704142	0	lncRNA	1036-1_{1..695}	"transcript_id ""ENST00000557729.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557729.1"" | genecode_v17"	chr2	119591401	119592095	-	ENSG00000258910.2	ENST00000557729.1	RP11-19E11.1	RP11-19E11.1-001	EN1	NA	chr2:119599747-119602686	inter
CUST_47699_PI429285431	1.6991866	A	0.87883383	A	1.76583772513905	0	lncRNA	51668-2_{3001..6000}	"gi|385137108|ref|NR_047646.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 76, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137108|ref|NR_047646.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 76, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047646.1	NA	NA	NA	NA	NA	inter
CUST_42624_PI429285431	1.5856961	A	0.88816774	A	1.62172405704612	0	lncRNA	45490-1_{1..80}	ENST00000390994 ncrna:snoRNA chromosome:GRCh37:5:40832758:40832837:-1 gene:ENSG00000212296 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390994 ncrna:snoRNA chromosome:GRCh37:5:40832758:40832837:-1 gene:ENSG00000212296 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	 40832758	 40832837	-	ENSG00000212296	ENST00000390994	NA	NA	CARD6	NA	chr5:40841410-40842837	inter
LNCA_21_P0014547	3.8431704	P	4.181841	P	0.790769646639601	0	lncRNA	XR_110272	XR_110272	XR_110272	NA	NA	LOC100506004	uncharacterized LOC100506004	NA	THC2666861	NA	"PREDICTED: Homo sapiens hypothetical LOC100506004 (LOC100506004), miscRNA [XR_110272]"	chr14:29445122-29445063	hs|14q12	Agilent_HUMAN_G3V2	XR_110272	XR_110272	chr14	 29445063	 29445122	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45219_PI429285431	3.2172024	P	1.2223644	A	3.98571347104168	0	lncRNA	49679-2_{3001..4207}	"gi|295849284|ref|NR_033651.1| Homo sapiens uncharacterized LOC100132891 (LOC100132891), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|295849284|ref|NR_033651.1| Homo sapiens uncharacterized LOC100132891 (LOC100132891), transcript variant 2, non-coding RNA"	Chr8	 72759351	 72760557	+	100132891	NR_033651.1	NA	NA	NA	"hg19_refFlat_MSC:range=chr8:72754896-727564135'pad=0,hg19_refFlat_MSC:range=chr8:72754896-727564135'pad=0 3'pad=0 strand=- repeatMasking=none,-95.20;hg19_refFlat_TRPA1:range=chr8:72935141-729876445'pad=0,hg19_refFlat_TRPA1:range=chr8:72935141-729876445'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70"	NA	inter
CUST_25620_PI429285431	4.505912	P	3.387408	P	2.17121711769223	0	lncRNA	27150-1_{1..1508}	lnc-STK4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STK4-1:1	chr20	 43707743	 43709250	+	lnc-STK4-1	lnc-STK4-1:1	ENSG00000240848.1	RP1-211D12.3	STK4	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0,hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20chr20:43697743-43708594"	NA	inner
CUST_32982_PI429285431	4.974433	P	4.546971	P	1.34486559688821	0	lncRNA	34598-1_{1..1974}	n339661|AK130735|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2105|NULL|0.3047170|-0.2670510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339661|AK130735|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2105|NULL|0.3047170|-0.2670510	chr3	158587688	158589661	+	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40"	NA	inter
CUST_24809_PI429285431	1.053383	A	0.8801994	A	1.12754389630622	0	lncRNA	26351-1_{1..3000}	lnc-CASP9-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CASP9-3:1	chr1	 15670272	 15673271	-	lnc-CASP9-3	lnc-CASP9-3:1	ENSG00000233485.1	RP3-467K16.2	FHAD1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_FHAD1:range=chr1:15578281-157239095'pad=0,hg19_refFlat_FHAD1:range=chr1:15578281-157239095'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr1:15660272-15680372"	NA	inner
CUST_43700_PI429285431	9.172966	P	9.35711	P	0.88017115648418	0	lncRNA	48449-1_{1..2143}	"gi|374858065|ref|NR_046083.1| Homo sapiens adiponectin receptor 1 (ADIPOR1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374858065|ref|NR_046083.1| Homo sapiens adiponectin receptor 1 (ADIPOR1), transcript variant 2, non-coding RNA"	Chr1	202909960	202912102	-	51094	NR_046083.1	NA	NA	NA	NA	NA	inter
CUST_30353_PI429285431	3.186051	P	3.3170164	P	0.913220151410033	0	lncRNA	32129-1_{1..331}	n335447|AY684333|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257116_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257116_08|-1.1339700|-0.1850923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335447|AY684333|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257116_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257116_08|-1.1339700|-0.1850923	chr6	  3715673	  3716003	-	NA	NA	NA	NA	C6orf145	NA	chr6:3722836-3727767	inter
CUST_25634_PI429285431	2.909368	A	4.494595	P	0.333272226625266	0	lncRNA	27164-1_{1..591}	lnc-ARHGAP26-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ARHGAP26-4:1	chr5	141843535	141844125	+	lnc-ARHGAP26-4	lnc-ARHGAP26-4:1	ENSG00000231185.2	AC005592.2	NA	NA	NA	inter
LNCA_21_P0007775	3.9841497	P	4.419896	P	0.739311213147686	0	lncRNA	TCONS_00020963	NA	NA	NA	NA	XLOC_010233	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010233), lincRNA [TCONS_00020963]"	chr12:124688107-124688048	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00020963	TCONS_00020963	chr12	124688048	124688107	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43802_PI429285431	1.3443921	A	1.5883114	A	0.844448121978265	0	lncRNA	48529-2_{3001..3444}	"gi|109638758|ref|NR_003094.1| Homo sapiens E2F transcription factor 6 (E2F6), transcript variant d, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|109638758|ref|NR_003094.1| Homo sapiens E2F transcription factor 6 (E2F6), transcript variant d, non-coding RNA"	NA	NA	NA	NA	NA	NR_003094.1	NA	NA	NA	NA	NA	Unknown
CUST_43845_PI429285431	5.7833524	P	4.6512866	P	2.19172349311777	0	lncRNA	48569-1_{1..1916}	"gi|388556524|ref|NR_049781.1| Homo sapiens vaccinia related kinase 2 (VRK2), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388556524|ref|NR_049781.1| Homo sapiens vaccinia related kinase 2 (VRK2), transcript variant 7, non-coding RNA"	Chr2	 58273777	 58275692	+	7444	NR_049781.1	NA	NA	NA	"hg19_refFlat_FANCL:range=chr2:58386900-584684485'pad=0,hg19_refFlat_FANCL:range=chr2:58386900-584684485'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10"	NA	inter
CUST_221_PI429285431	10.873009	P	10.77083	P	1.07339345764892	0	lncRNA	211-1_{1..760}	"transcript_id ""ENST00000447959.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447959.1"" | genecode_v17"	chr1	 44516787	 44517546	+	ENSG00000230615.1	ENST00000447959.1	RP5-1198O20.4	RP5-1198O20.4-003	NA	NA	NA	inter
CUST_28141_PI429285431	0.89002705	A	0.89732945	A	0.994951150532132	0	lncRNA	29767-1_{1..568}	n325418|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323667|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323667|-1.2378400|-0.4034140	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325418|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323667|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323667|-1.2378400|-0.4034140	chr2	 15726258	 15726825	-	NA	NA	NA	NA	DDX1	NA	chr2:15716258-15748059	inner
CUST_51872_PI429285431	0.87870216	A	0.8791615	A	0.999681660454871	0	lncRNA	55424-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00012668 range=chr19:53088914-53103361 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012668 range=chr19:53088914-53103361 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 53088914	 53091913	+	NA	NA	NA	NA	ZNF701	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10chr19:53078914-53090427"	NA	inner
CUST_3137_PI429285431	0.8926735	A	0.99167585	A	0.933678424049141	0	lncRNA	3116-1_{1..926}	"transcript_id ""ENST00000527672.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527672.1"" | genecode_v17"	chr8	 61831540	 61832465	+	ENSG00000254777.1	ENST00000527672.1	AC022182.1	AC022182.1-002	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00"	NA	inter
CUST_18491_PI429285431	1.1258813	A	1.2839689	A	0.896212280182727	0	lncRNA	20209-1_{1..1495}	lnc-ZNF180-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF180-1:8	chr19	 45033481	 45034975	-	lnc-ZNF180-1	lnc-ZNF180-1:8	ENSG00000176395	CEACAM20	CEACAM20	NA	chr19:45023481-45033548	inner
LNCA_33_P3258875	5.1987715	P	5.5526423	P	0.782481853460543	0	lncRNA	ENST00000435702	XR_109691	XR_109691	NA	Hs.731325	NA	NA	ENST00000435702	THC2487442	NA	"PREDICTED: Homo sapiens FLJ41733 protein (FLJ41733), miscRNA [XR_109691]"	chr21:44783729-44783788	hs|21q22.3	Agilent_HUMAN_G3V2	ENST00000435702	ENST00000435702	chr21	 44783729	 44783788	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1751_PI429285431	2.6106825	A	2.2167635	A	1.31395785301769	0	lncRNA	1737-1_{1..517}	"transcript_id ""ENST00000532680.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532680.1"" | genecode_v17"	chr4	 39640801	 39641317	+	ENSG00000255458.1	ENST00000532680.1	RP11-539G18.2	RP11-539G18.2-005	C4orf34	NA	chr4:39630801-39640481	inter
CUST_35052_PI429285431	5.9699054	P	6.3605824	P	0.762771581802278	0	lncRNA	36462-1_{1..1003}	n341999|BC030980|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4480|NULL|-1.0240900|-0.3388040	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341999|BC030980|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4480|NULL|-1.0240900|-0.3388040	chr12	101988748	101989750	+	NA	NA	NA	NA	MYBPC1	NA	chr12:101988747-102079658	inner
CUST_48270_PI429285431	8.107122	P	8.041615	P	1.04645262544493	0	lncRNA	52132-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00000066 range=chr1:3817250-3833764 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000066 range=chr1:3817250-3833764 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	  3817250	  3820249	+	NA	NA	NA	NA	C1orf174	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr1:3807250-3816857"	NA	inter
CUST_19260_PI429285431	0.8773991	A	0.88178927	A	0.996961591377282	0	lncRNA	20929-1_{1..3000}	lnc-C9orf4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-C9orf4-1:1	chr9	111892573	111895572	-	lnc-C9orf4-1	lnc-C9orf4-1:1	ENSG00000260230.1	RP11-526J3.3	C9orf4	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-27.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90chr9:111899581-111908218"	NA	inter
CUST_9005_PI429285431	1.0234219	A	1.3094879	A	0.82013539101926	0	lncRNA	10533-1_{1..1187}	lnc-TREX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TREX1-2:1	chr3	 48732738	 48733924	+	lnc-TREX1-2	lnc-TREX1-2:1	ENSG00000232483	ENST00000421921	IP6K2	"hg19_refFlat_IP6K2:range=chr3:48731897-487327245'pad=0,hg19_refFlat_IP6K2:range=chr3:48731897-487327245'pad=0 3'pad=0 strand=- repeatMasking=none,-96.20;hg19_refFlat_IP6K2:range=chr3:48725706-487327245'pad=0,hg19_refFlat_IP6K2:range=chr3:48725706-487327245'pad=0 3'pad=0 strand=- repeatMasking=none,-96.20;hg19_refFlat_IP6K2:range=chr3:48732332-487527825'pad=0,hg19_refFlat_IP6K2:range=chr3:48732332-487527825'pad=0 3'pad=0 strand=- repeatMasking=none,-101.00;hg19_refFlat_IP6K2:range=chr3:48732332-487528685'pad=0,hg19_refFlat_IP6K2:range=chr3:48732332-487528685'pad=0 3'pad=0 strand=- repeatMasking=none,-101.00;hg19_refFlat_IP6K2:range=chr3:48731582-487327245'pad=0,hg19_refFlat_IP6K2:range=chr3:48731582-487327245'pad=0 3'pad=0 strand=- repeatMasking=none,-96.20chr3:48725436-48742949"	NA	inner
CUST_1378_PI429285431	0.87667227	A	0.87928253	A	0.998192341426823	0	lncRNA	1366-1_{1..552}	"transcript_id ""ENST00000464271.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000464271.1"" | genecode_v17"	chr3	 72110084	 72110635	-	ENSG00000241163.2	ENST00000464271.1	RP11-398A8.3	RP11-398A8.3-005	NA	NA	NA	inter
CUST_4032_PI429285431	6.90456	P	6.89402	P	1.00733252353906	0	lncRNA	3994-1_{1..504}	"transcript_id ""ENST00000527627.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527627.1"" | genecode_v17"	chr11	 82783108	 82783611	+	ENSG00000246067.2	ENST00000527627.1	RP11-113K21.5	RP11-113K21.5-002	RAB30	NA	chr11:82773108-82782884	inter
CUST_49579_PI429285431	0.88688475	A	0.9023899	A	0.989310195428421	0	lncRNA	53368-1_{1..1345}	hg19_lincRNAsTranscripts_TCONS_l2_00024447 range=chr6:138698925-138704585 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024447 range=chr6:138698925-138704585 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	138698925	138700269	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30670_PI429285431	0.9148506	A	0.94877326	A	0.97676088975939	0	lncRNA	32452-1_{1..237}	n336136|X92025|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324503|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324503|-1.3135300|-0.3279216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336136|X92025|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324503|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324503|-1.3135300|-0.3279216	chr14	 22466245	 22466481	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28557_PI429285431	0.9156972	A	0.92414623	A	0.994160694084411	0	lncRNA	30233-1_{1..380}	n325910|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049359|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049359|-1.0920800|-0.3593392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325910|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049359|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049359|-1.0920800|-0.3593392	chr10	 92744356	 92744735	+	NA	NA	NA	NA	NA	"hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0,hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50"	NA	inter
CUST_47414_PI429285431	6.297925	P	5.247937	P	2.07051262557127	0	lncRNA	51456-2_{3001..5073}	"gi|237681086|ref|NR_027673.1| Homo sapiens adenosine deaminase, RNA-specific, B1 (ADARB1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237681086|ref|NR_027673.1| Homo sapiens adenosine deaminase, RNA-specific, B1 (ADARB1), transcript variant 4, non-coding RNA"	Chr21	 46497493	 46499565	+	104	NR_027673.1	NA	NA	NA	NA	NA	inter
CUST_18043_PI429285431	0.8933724	A	1.2081627	A	0.803967841359166	0	lncRNA	19778-1_{1..1505}	lnc-NEDD4L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NEDD4L-1:1	chr18	 56117720	 56119224	+	lnc-NEDD4L-1	lnc-NEDD4L-1:1	XLOC_012693	linc-MALT1-2	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.59;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30"	NA	inter
CUST_42148_PI429285431	12.157047	P	12.35741	P	0.870331549510915	0	lncRNA	44175-1_{1..84}	ENST00000577389 ncrna:miRNA chromosome:GRCh37:17:17145878:17145961:1 gene:ENSG00000265109 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577389 ncrna:miRNA chromosome:GRCh37:17:17145878:17145961:1 gene:ENSG00000265109 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 17145878	 17145961	+	ENSG00000265109	ENST00000577389	NA	NA	COPS3	NA	chr17:17145325-17155961	inter
CUST_7849_PI429285431	1.3723514	A	1.4797975	A	0.928229787249378	0	lncRNA	9473-1_{1..2415}	lnc-ARMC6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARMC6-1:1	chr19	 19103397	 19105811	+	lnc-ARMC6-1	lnc-ARMC6-1:1	ENSG00000245755	ENST00000500699	SUGP2	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10chr19:19101697-19114419"	NA	inner
CUST_49114_PI429285431	4.630463	P	5.2377276	P	0.656440156119074	0	lncRNA	52938-1_{1..699}	hg19_lincRNAsTranscripts_TCONS_l2_00020536 range=chr4:57423928-57467187 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020536 range=chr4:57423928-57467187 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 57423928	 57424626	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_1734_PI429285431	0.8957375	A	0.9107074	A	0.989677304560011	0	lncRNA	1720-1_{1..246}	"transcript_id ""ENST00000514737.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514737.1"" | genecode_v17"	chr4	 34659228	 34659473	+	ENSG00000250597.1	ENST00000514737.1	RP11-725M22.1	RP11-725M22.1-001	NA	NA	NA	inter
CUST_31711_PI429285431	6.015187	P	6.3215294	P	0.808689396422931	0	lncRNA	33454-1_{1..1218}	n338240|M61120|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|633|NULL|3.1874500|-0.0481118	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338240|M61120|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|633|NULL|3.1874500|-0.0481118	chr1	153233401	153234618	+	NA	NA	NA	NA	LOR	NA	chr1:153232179-153234600	inner
CUST_50725_PI429285431	0.90860754	A	0.90317994	A	1.00376921131481	0	lncRNA	54393-1_{1..1554}	hg19_lincRNAsTranscripts_TCONS_l2_00003186 range=chr10:99473207-99478181 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003186 range=chr10:99473207-99478181 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 99473207	 99474760	+	NA	NA	NA	NA	MARVELD1	NA	chr10:99473465-99477909	inner
CUST_12519_PI429285431	1.0861657	A	0.92784894	A	1.11598432239734	0	lncRNA	14130-1_{1..351}	lnc-NDC80-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDC80-2:1	chr18	  2169900	  2170250	+	lnc-NDC80-2	lnc-NDC80-2:1	XLOC_012608	linc-NDC80-2	NA	NA	NA	inter
CUST_28376_PI429285431	0.9075189	A	0.92601	A	0.987264734801327	0	lncRNA	30028-1_{1..387}	n325691|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045281|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045281|-0.7712740|-0.1952695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325691|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045281|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045281|-0.7712740|-0.1952695	chr13	 74722616	 74723002	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6902_PI429285431	0.90304077	A	1.0562166	A	0.899268706134052	0	lncRNA	6852-1_{1..530}	"transcript_id ""ENST00000328344.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000328344.2"" | genecode_v17"	chr21	 46654267	 46654796	+	ENSG00000182586.3	ENST00000328344.2	LINC00334	LINC00334-001	ADARB1	NA	chr21:46644267-46646478	inter
CUST_23954_PI429285431	1.2306719	A	2.5519257	A	0.400186997936684	0	lncRNA	25510-1_{1..544}	lnc-TUFM-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUFM-2:1	chr16	 28874483	 28875026	-	lnc-TUFM-2	lnc-TUFM-2:1	ENSG00000261766.1	RP11-22P6.2	SH2B1	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40chr16:28875078-28884661"	NA	inter
CUST_3062_PI429285431	0.8955959	A	0.8979664	A	0.998358243767109	0	lncRNA	3041-1_{1..511}	"transcript_id ""ENST00000521714.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521714.1"" | genecode_v17"	chr8	 33831219	 33831729	-	ENSG00000254194.1	ENST00000521714.1	RP1-273G13.3	RP1-273G13.3-002	NA	NA	NA	inter
CUST_3213_PI429285431	2.9309907	P	2.979813	A	0.966725163449352	0	lncRNA	3192-1_{1..616}	"transcript_id ""ENST00000524359.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524359.1"" | genecode_v17"	chr8	 83824339	 83824954	+	ENSG00000254394.1	ENST00000524359.1	CTD-2272D18.1	CTD-2272D18.1-001	NA	NA	NA	inter
CUST_39397_PI429285431	7.789876	P	8.097674	P	0.807873884743137	0	lncRNA	40360-1_{1..434}	n386577|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010oxs.1||0.5401520|-0.1469091	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386577|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010oxs.1||0.5401520|-0.1469091	chr1	144166563	144166996	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008323	0.88956547	A	1.6228784	A	0.601521024999803	0	lncRNA	TCONS_00022477	NA	NA	NA	NA	XLOC_010805	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010805), lincRNA [TCONS_00022477]"	chr14:38073536-38075903	hs|14q21.1	Agilent_HUMAN_G3V2	TCONS_00022477	TCONS_00022477	chr14	 38073536	 38075903	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006154	1.0532647	A	0.8995042	A	1.11246542626027	0	lncRNA	TCONS_00016014	NA	NA	NA	NA	XLOC_007406	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007406), lincRNA [TCONS_00016014]"	chr9:76221492-76221551	hs|9q21.13	Agilent_HUMAN_G3V2	TCONS_00016014	TCONS_00016014	chr9	 76221492	 76221551	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42436_PI429285431	0.89051664	A	0.8952701	A	0.996710574656199	0	lncRNA	45159-1_{1..71}	ENST00000362987 ncrna:snoRNA chromosome:GRCh37:4:77323229:77323299:1 gene:ENSG00000199857 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362987 ncrna:snoRNA chromosome:GRCh37:4:77323229:77323299:1 gene:ENSG00000199857 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	 77323229	 77323299	+	ENSG00000199857	ENST00000362987	NA	NA	SHROOM3	NA	chr4:77322377-77333299	inner
CUST_8420_PI429285431	1.8284874	A	1.0903344	A	1.66803897633667	0	lncRNA	9992-2_{3001..3528}	lnc-TMEM132D-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132D-1:6	chr12	130529772	130530299	-	lnc-TMEM132D-1	lnc-TMEM132D-1:6	ENSG00000214039	XLOC_010260	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70"	NA	inter
CUST_35761_PI429285431	1.2914354	A	1.2109498	A	1.05737388454782	0	lncRNA	37181-1_{1..1589}	n342973|NULL|mRNAlikelncRNA|Homosapiens|ST7OT|lncRNAdb|342973|http://lncrnadb.com/Detail.aspx?TKeyID=204|-1.4375300|-0.2418206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n342973|NULL|mRNAlikelncRNA|Homosapiens|ST7OT|lncRNAdb|342973|http://lncrnadb.com/Detail.aspx?TKeyID=204|-1.4375300|-0.2418206	NA	NA	     1588	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_620_PI429285431	1.346334	A	0.89695233	A	1.36545490595945	0	lncRNA	612-1_{1..468}	"transcript_id ""ENST00000441338.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441338.1"" | genecode_v17"	chr1	244232122	244232589	-	ENSG00000229960.1	ENST00000441338.1	RP11-278H7.4	RP11-278H7.4-001	NA	NA	NA	inter
LNCA_21_P0012544	0.883738	A	0.89244574	A	0.993982433089372	0	lncRNA	ENST00000482721	NA	NA	NA	NA	XLOC_l2_010258	NA	ENST00000482721	THC2525323	NA	"BROAD Institute lincRNA (XLOC_l2_010258), lincRNA [TCONS_l2_00020147]"	chr3:84917757-84851853	hs|3p12.1	Agilent_HUMAN_G3V2	ENST00000482721	ENST00000482721	chr3	 84851853	 84917757	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7109_PI429285431	0.8872313	A	0.8845928	A	1.0018305422365	0	lncRNA	7045-1_{1..2907}	"transcript_id ""ENST00000428222.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428222.1"" | genecode_v17"	chrX	118425492	118428398	+	ENSG00000230392.1	ENST00000428222.1	RP5-1139I1.1	RP5-1139I1.1-001	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80"	NA	inter
CUST_14575_PI429285431	1.2659441	A	1.0355448	A	1.17315960399001	0	lncRNA	16241-1_{1..2447}	lnc-ZNF180-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF180-2:1	chr19	 45249367	 45251813	-	lnc-ZNF180-2	lnc-ZNF180-2:1	XLOC_013356	linc-CEACAM20-1	BCL3	NA	chr19:45251978-45260906	inter
CUST_31188_PI429285431	0.8936821	A	0.90486234	A	0.992280398525605	0	lncRNA	32982-1_{1..966}	n337628|AF143324|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|7|NULL|-1.0900600|-0.3976351	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337628|AF143324|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|7|NULL|-1.0900600|-0.3976351	chrX	 11140221	 11141186	-	NA	NA	NA	NA	HCCS	NA	chrX:11130221-11141206	inner
CUST_1987_PI429285431	1.0796655	A	1.1330162	A	0.963695517686564	0	lncRNA	1978-1_{1..905}	"transcript_id ""ENST00000502661.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502661.1"" | genecode_v17"	chr4	176267509	176268413	-	ENSG00000248551.1	ENST00000502661.1	RP11-287F9.2	RP11-287F9.2-001	NA	NA	NA	inter
CUST_48309_PI429285431	1.0292274	A	0.8859246	A	1.10443062622351	0	lncRNA	52167-1_{1..1577}	hg19_lincRNAsTranscripts_TCONS_l2_00001059 range=chr1:17006850-17014412 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001059 range=chr1:17006850-17014412 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 17006850	 17008426	-	NA	NA	NA	NA	LOC729574	NA	chr1:16999498-17000007	inter
CUST_17028_PI429285431	0.87912756	A	0.8897871	A	0.992638598727781	0	lncRNA	18739-1_{1..1063}	lnc-SERPINI1-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERPINI1-9:2	chr3	164333587	164334649	+	lnc-SERPINI1-9	lnc-SERPINI1-9:2	XLOC_002900	linc-SERPINI1-4	NA	NA	NA	inter
LNCA_21_P0001939	2.678935	A	1.8219006	A	1.81131115490031	0	lncRNA	ENST00000453206	NA	NA	NA	NA	XLOC_001762	NA	ENST00000453206	NA	NA	"BROAD Institute lincRNA (XLOC_001762), lincRNA [TCONS_00003055]"	chr2:176768901-176768960	hs|2q31.1	Agilent_HUMAN_G3V2	ENST00000453206	ENST00000453206	chr2	176768901	176768960	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48382_PI429285431	1.6538591	A	0.90388197	A	1.68176617047458	0	lncRNA	52235-1_{1..1754}	hg19_lincRNAsTranscripts_TCONS_l2_00000482 range=chr1:110954795-110969563 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000482 range=chr1:110954795-110969563 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	110954795	110956548	+	NA	NA	NA	NA	HBXIP	NA	chr1:110944795-110950546	inter
CUST_27257_PI429285431	0.876746	A	0.87827855	A	0.998938281310978	0	lncRNA	28810-1_{1..821}	n324403|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042070|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042070|-0.9557790|-0.2594876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324403|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042070|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042070|-0.9557790|-0.2594876	chr6	125733055	125733875	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43103_PI429285431	8.12605	P	8.343545	P	0.860057487502197	0	lncRNA	47722-1_{1..95}	ENST00000408637 ncrna:snRNA chromosome:GRCh37:12:65332803:65332897:1 gene:ENSG00000221564 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408637 ncrna:snRNA chromosome:GRCh37:12:65332803:65332897:1 gene:ENSG00000221564 gene_biotype:snRNA transcript_biotype:snRNA	chr12	 65332803	 65332897	+	ENSG00000221564	ENST00000408637	NA	NA	NA	NA	NA	inter
CUST_49101_PI429285431	0.8882665	A	0.90197915	A	0.990540143954	0	lncRNA	52925-1_{1..303}	hg19_lincRNAsTranscripts_TCONS_l2_00021101 range=chr4:34260657-34271355 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021101 range=chr4:34260657-34271355 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 34260657	 34260959	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46709_PI429285431	3.2584934	P	2.254574	A	2.00544082938048	0	lncRNA	50868-1_{1..1030}	"gi|338753378|ref|NR_040011.1| Homo sapiens uncharacterized LOC100506388 (LOC100506388), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338753378|ref|NR_040011.1| Homo sapiens uncharacterized LOC100506388 (LOC100506388), transcript variant 2, non-coding RNA"	NW_003315952.2	   198829	   199858	+	100506388	NR_040011.1	NA	NA	NA	NA	NA	Unknown
CUST_9299_PI429285431	6.8355494	P	7.2283244	P	0.761663148138496	0	lncRNA	10804-1_{1..318}	lnc-RETNLB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RETNLB-1:1	chr3	108464278	108464595	-	lnc-RETNLB-1	lnc-RETNLB-1:1	XLOC_003211	linc-KIAA1524-2	NA	NA	NA	inter
CUST_25555_PI429285431	0.89239913	A	0.90564024	A	0.990863951568362	0	lncRNA	27084-1_{1..547}	lnc-CATSPER3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CATSPER3-2:1	chr5	134482773	134483319	+	lnc-CATSPER3-2	lnc-CATSPER3-2:1	ENSG00000250513.1	CTC-349C3.1	NA	NA	NA	inter
CUST_6895_PI429285431	0.8900926	A	0.89123136	A	0.999210983154287	0	lncRNA	6845-1_{1..863}	"transcript_id ""ENST00000411694.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411694.1"" | genecode_v17"	chr21	 45578623	 45579485	-	ENSG00000225331.1	ENST00000411694.1	AP001055.6	AP001055.6-002	NA	NA	NA	inter
LNCA_21_P0006247	0.8799659	A	0.8808185	A	0.999409197306536	0	lncRNA	TCONS_00016245	NA	NA	NA	NA	XLOC_007628	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007628), lincRNA [TCONS_00016245]"	chr9:749427-749368	hs|9p24.3	Agilent_HUMAN_G3V2	TCONS_00016245	TCONS_00016245	chr9	   749368	   749427	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007657	4.2600827	P	4.4265165	P	0.891042530486713	0	lncRNA	TCONS_00021246	NA	NA	NA	NA	XLOC_009937	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009937), lincRNA [TCONS_00021246]"	chr12:126651749-126651808	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00021246	TCONS_00021246	chr12	126651749	126651808	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014391	5.163132	P	5.7347436	P	0.672864727420714	0	lncRNA	XR_109568	XR_109568	XR_109568	NA	NA	LOC100507305	uncharacterized LOC100507305	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507305, transcript variant 2 (LOC100507305), miscRNA [XR_109568]"	chr19:12943864-12943923	hs|19p13.2	Agilent_HUMAN_G3V2	XR_109568	XR_109568	chr19	 12943864	 12943923	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004402	10.636053	P	10.299546	P	1.26269569776896	0	lncRNA	BC032910	NA	BC032910	NA	Hs.382230	XLOC_004842	NA	NA	THC2602463	NA	"BROAD Institute lincRNA (XLOC_004842), lincRNA [TCONS_00010353]"	chr5:60921004-60920945	hs|5q12.1	Agilent_HUMAN_G3V2	BC032910	BC032910	chr5	 60920945	 60921004	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23027_PI429285431	1.8199177	A	3.4242857	P	0.328879730519757	0	lncRNA	24598-1_{1..368}	lnc-ARNTL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ARNTL-1:1	chr11	 13691659	 13692026	+	lnc-ARNTL-1	lnc-ARNTL-1:1	ENSG00000254791.1	FAR1-IT1	FAR1	NA	chr11:13690206-13701696	inner
CUST_27577_PI429285431	3.433288	P	2.8183346	A	1.53150852756132	0	lncRNA	29155-1_{1..530}	n324778|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000192579|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000192579|2.0280300|-0.2288929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324778|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000192579|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000192579|2.0280300|-0.2288929	chr21	 45478694	 45479223	+	NA	NA	NA	NA	TRAPPC10	"hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-25.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60chr21:45468694-45513073"	NA	inner
CUST_9913_PI429285431	0.8943124	A	0.89708644	A	0.998079029425499	0	lncRNA	11437-1_{1..1427}	lnc-PKN2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PKN2-2:1	chr1	 88930536	 88931962	+	lnc-PKN2-2	lnc-PKN2-2:1	XLOC_000281	linc-PKN2-1	NA	NA	NA	inter
CUST_5841_PI429285431	1.5080234	A	1.0264412	A	1.39627411726674	0	lncRNA	5770-1_{1..436}	"transcript_id ""ENST00000578802.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578802.1"" | genecode_v17"	chr17	 38083995	 38084430	+	ENSG00000264968.1	ENST00000578802.1	RP11-387H17.4	RP11-387H17.4-003	ORMDL3	NA	chr17:38077296-38083884	inter
CUST_40629_PI429285431	2.517887	A	2.312891	A	1.15268315087813	0	lncRNA	41370-1_{1..3000}	n410122|NR_036555|lncRNA|Homosapiens||RefGeneNoncode|NR_036555||1.5181100|-0.2784169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410122|NR_036555|lncRNA|Homosapiens||RefGeneNoncode|NR_036555||1.5181100|-0.2784169	chr12	 13523604	 13526603	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33942_PI429285431	1.5144219	A	1.4088788	A	1.07589933463657	0	lncRNA	35482-1_{1..1546}	n340742|BC010432|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3205|NULL|0.4748200|-0.1730125	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340742|BC010432|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3205|NULL|0.4748200|-0.1730125	chr5	172354583	172356128	+	NA	NA	NA	NA	ERGIC1	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30chr5:172344583-172366104"	NA	inner
CUST_8852_PI429285431	5.853818	P	5.696465	P	1.11523906310515	0	lncRNA	10391-1_{1..2215}	lnc-WDR31-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR31-1:1	chr9	116076583	116078797	-	lnc-WDR31-1	lnc-WDR31-1:1	ENSG00000248151	ENST00000514324	WDR31	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90chr9:116077930-116087893"	NA	inter
CUST_43147_PI429285431	0.89702415	A	0.9091798	A	0.991609741819497	0	lncRNA	47962-1_{1..774}	ENST00000599387 havana:sense_intronic chromosome:GRCh37:1:146136447:146147524:-1 gene:ENSG00000227733 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000599387 havana:sense_intronic chromosome:GRCh37:1:146136447:146147524:-1 gene:ENSG00000227733 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr1	146136447	146137220	-	ENSG00000227733	ENST00000599387	NA	NA	NA	NA	NA	inter
LNCA_19_P00321461	9.273639	P	9.209923	P	1.04515433735109	0	lncRNA	ENST00000512915	NA	NA	NA	NA	XLOC_l2_011204	NA	ENST00000512915	THC2536847	NA	"BROAD Institute lincRNA (XLOC_l2_011204), lincRNA [TCONS_l2_00021934]"	chr4:103340480-103340421	hs|4q24	Agilent_HUMAN_G3V2	ENST00000512915	ENST00000512915	chr4	103340421	103340480	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002839	5.5427446	P	5.7538176	P	0.863894473454973	0	lncRNA	ENST00000436060	NA	NA	NA	NA	XLOC_003045	NA	ENST00000436060	NA	NA	"BROAD Institute lincRNA (XLOC_003045), lincRNA [TCONS_00005741]"	chr3:10804541-10803573	hs|3p25.3	Agilent_HUMAN_G3V2	ENST00000436060	ENST00000436060	chr3	 10803573	 10804541	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24_PI429201921	5.252347	P	5.2972417	P	0.969360566428025	0	lncRNA	25-1_{1..994}	TC03002946.hg.1	TCONS_l2_00020130-XLOC_l2_010228 // Broad TUCP // linc-PRICKLE2-1 chr3:-:64430157-64431152 // chr3 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr3:-:64430157-64431152	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00020130-XLOC_l2_010228	linc-PRICKLE2-1	chr3	 64430157	 64431152	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47440_PI429285431	9.65399	P	10.102396	P	0.732852111976097	0	lncRNA	51473-2_{3001..4389}	"gi|296278247|ref|NR_033674.1| Homo sapiens DiGeorge syndrome critical region gene 2 (DGCR2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|296278247|ref|NR_033674.1| Homo sapiens DiGeorge syndrome critical region gene 2 (DGCR2), transcript variant 5, non-coding RNA"	Chr22	 19026795	 19028183	-	9993	NR_033674.1	NA	NA	NA	NA	NA	inter
CUST_40490_PI429285431	1.406367	A	0.8967157	A	1.42370604365655	0	lncRNA	41255-1_{1..2092}	n409425|NR_033822|lncRNA|Homosapiens||RefGeneNoncode|NR_033822||-1.1844800|-0.3215568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409425|NR_033822|lncRNA|Homosapiens||RefGeneNoncode|NR_033822||-1.1844800|-0.3215568	chr6	  1887519	  1889610	+	NA	NA	NA	NA	GMDS	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.60chr6:1877519-1915355"	NA	inner
CUST_41235_PI429285431	1.1268578	A	0.9281948	A	1.14763430595654	0	lncRNA	42154-1_{1..95}	ENST00000385298 ncrna:miRNA chromosome:GRCh37:10:105978547:105978641:-1 gene:ENSG00000208033 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385298 ncrna:miRNA chromosome:GRCh37:10:105978547:105978641:-1 gene:ENSG00000208033 gene_biotype:miRNA transcript_biotype:miRNA	chr10	105978547	105978641	-	ENSG00000208033	ENST00000385298	NA	NA	WDR96	NA	chr10:105968547-105988641	inner
CUST_11688_PI429285431	1.1913321	A	0.9273443	A	1.20079327305932	0	lncRNA	13266-1_{1..235}	lnc-SERINC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERINC1-2:1	chr6	122432130	122432364	-	lnc-SERINC1-2	lnc-SERINC1-2:1	XLOC_005820	linc-C6orf170-2	NA	NA	NA	inter
LNCA_21_P0003152	0.9025668	A	0.9273194	A	0.982989151606436	0	lncRNA	TCONS_00006587	NA	NA	NA	NA	XLOC_003203	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003203), lincRNA [TCONS_00006587]"	chr3:106639681-106639622	hs|3q13.12	Agilent_HUMAN_G3V2	TCONS_00006587	TCONS_00006587	chr3	106639622	106639681	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14752_PI429285431	2.4561481	A	2.52687	A	0.952161433474867	0	lncRNA	16415-1_{1..560}	lnc-MRAP2-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRAP2-2:5	chr6	 84716534	 84717093	+	lnc-MRAP2-2	lnc-MRAP2-2:5	XLOC_005371	linc-MRAP2-2	NA	NA	NA	inter
CUST_5099_PI429285431	4.7445683	P	5.4670725	P	0.606044569145374	0	lncRNA	5039-1_{1..351}	"transcript_id ""ENST00000567854.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567854.1"" | genecode_v17"	chr15	 24407902	 24408252	-	ENSG00000260551.1	ENST00000567854.1	PWRN2	PWRN2-003	NA	NA	NA	inter
CUST_10941_PI429285431	3.1263342	P	2.8478014	A	1.2129606934344	0	lncRNA	12482-1_{1..221}	lnc-A2M-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-A2M-1:4	chr12	  9211267	  9211487	-	lnc-A2M-1	lnc-A2M-1:4	XLOC_010007	linc-M6PR	A2M	NA	chr12:9220304-9221461	inter
CUST_286_PI429285431	1.3902878	A	0.9061352	A	1.39876402814356	0	lncRNA	277-1_{1..557}	"transcript_id ""ENST00000424953.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424953.1"" | genecode_v17"	chr1	 74100899	 74101455	+	ENSG00000223479.3	ENST00000424953.1	RP4-788P17.1	RP4-788P17.1-001	NA	NA	NA	inter
CUST_5830_PI429285431	6.9179173	P	6.6576815	P	1.19767444144985	0	lncRNA	5758-1_{1..388}	"transcript_id ""ENST00000590149.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590149.1"" | genecode_v17"	chr17	 34339544	 34339931	+	ENSG00000267431.1	ENST00000590149.1	RP11-104J23.2	RP11-104J23.2-001	CCL23	NA	chr17:34340097-34345005	inter
CUST_14265_PI429285431	1.760036	A	0.90791994	A	1.80514666710725	0	lncRNA	15923-1_{1..950}	lnc-FLRT2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FLRT2-2:2	chr14	 86595840	 86596789	+	lnc-FLRT2-2	lnc-FLRT2-2:2	XLOC_010891	linc-GPR65-6	NA	NA	NA	inter
CUST_51722_PI429285431	3.8657837	P	4.0651627	P	0.870925367570666	0	lncRNA	55279-1_{1..1807}	hg19_lincRNAsTranscripts_TCONS_l2_00011784 range=chr18:14214218-14222659 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011784 range=chr18:14214218-14222659 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr18	 14214218	 14216024	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40582_PI429285431	3.0992508	P	1.0917513	A	4.02084716664622	0	lncRNA	41333-2_{3001..3644}	n410027|NR_036464|lncRNA|Homosapiens||RefGeneNoncode|NR_036464||8.9697800|-0.3612971	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410027|NR_036464|lncRNA|Homosapiens||RefGeneNoncode|NR_036464||8.9697800|-0.3612971	chr4	 15609006	 15609649	-	NA	NA	NA	NA	CC2D2A	NA	chr4:15596006-15603180	inter
CUST_16218_PI429285431	5.769875	P	6.1196146	P	0.784725724597157	0	lncRNA	17924-1_{1..751}	lnc-DNAJB11-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAJB11-3:5	chr3	186162695	186163445	+	lnc-DNAJB11-3	lnc-DNAJB11-3:5	XLOC_002958	linc-DNAJB11-3	NA	NA	NA	inter
CUST_7954_PI429285431	5.7612815	P	6.0559998	P	0.815231498607097	0	lncRNA	9566-1_{1..2228}	lnc-C21orf54-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C21orf54-2:1	chr21	 34638368	 34640595	-	lnc-C21orf54-2	lnc-C21orf54-2:1	ENSG00000223799	AP000295.7	IFNAR2	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60chr21:34628368-34636827"	NA	inter
LNCA_21_P0004375	0.8991526	A	0.91551644	A	0.988721534634558	0	lncRNA	TCONS_00010294	NA	NA	NA	NA	XLOC_004767	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004767), lincRNA [TCONS_00010294]"	chr5:31175482-31175423	hs|5p13.3	Agilent_HUMAN_G3V2	TCONS_00010294	TCONS_00010294	chr5	 31175423	 31175482	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37200_PI429285431	1.246416	A	0.8949195	A	1.2758834083121	0	lncRNA	38312-1_{1..1635}	n345632|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1181|NULL|-1.3202200|-0.2162626	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345632|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1181|NULL|-1.3202200|-0.2162626	chr4	 25173016	 25174650	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003930	0.8931036	A	0.9068784	A	0.9904974732979	0	lncRNA	THC2506711	NA	NA	NA	NA	XLOC_004577	NA	NA	THC2506711	NA	"BROAD Institute lincRNA (XLOC_004577), lincRNA [TCONS_00009260]"	chr5:139552474-139552533	hs|5q31.3	Agilent_HUMAN_G3V2	THC2506711	THC2506711	chr5	139552474	139552533	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3620_PI429285431	0.90256834	A	1.0513835	A	0.901990935253073	0	lncRNA	3590-1_{1..575}	"transcript_id ""ENST00000429539.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429539.1"" | genecode_v17"	chr10	 10100685	 10101259	+	ENSG00000224788.1	ENST00000429539.1	RP5-933E2.1	RP5-933E2.1-001	NA	NA	NA	inter
LNCA_21_P0003898	0.88974833	A	0.9022499	A	0.991372008610336	0	lncRNA	TCONS_00009076	NA	NA	NA	NA	XLOC_003991	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003991), lincRNA [TCONS_00009076]"	chr4:77829460-77829401	hs|4q21.1	Agilent_HUMAN_G3V2	TCONS_00009076	TCONS_00009076	chr4	 77829401	 77829460	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10143_PI429285431	2.5399685	A	2.4431136	A	1.06943952289467	0	lncRNA	11665-1_{1..1369}	lnc-KIN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-KIN-2:1	chr10	  8094928	  8096296	-	lnc-KIN-2	lnc-KIN-2:1	XLOC_008724	linc-KIN-5	GATA3	NA	chr10:8096667-8105447	inter
CUST_32697_PI429285431	1.1798261	A	1.8358624	A	0.634619474994412	0	lncRNA	34343-1_{1..1660}	n339327|AK097679|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1759|NULL|-0.8702120|-0.1223893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339327|AK097679|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1759|NULL|-0.8702120|-0.1223893	chr16	 87634131	 87635790	-	NA	NA	NA	NA	JPH3	NA	chr16:87636499-87645796	inter
CUST_30922_PI429285431	4.3333387	P	2.4589987	A	3.66633852304598	0	lncRNA	32710-1_{1..554}	n336973|BC105806|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338287|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338287|1.7273600|-0.2551818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336973|BC105806|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338287|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338287|1.7273600|-0.2551818	chr13	 53029616	 53030169	+	NA	NA	NA	NA	VPS36	NA	chr13:53019616-53024763	inner
CUST_16234_PI429285431	11.671006	P	11.8336935	P	0.893359340617708	0	lncRNA	17941-1_{1..1408}	lnc-ERICH1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERICH1-5:1	chr8	  1377481	  1378888	-	lnc-ERICH1-5	lnc-ERICH1-5:1	XLOC_006973	linc-ERICH1-8	NA	NA	NA	inter
CUST_15205_PI429285431	0.9029327	A	0.91322494	A	0.992891349699209	0	lncRNA	16873-1_{1..914}	lnc-MAPK8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAPK8-1:1	chr10	 49651168	 49652081	+	lnc-MAPK8-1	lnc-MAPK8-1:1	XLOC_008482	linc-WDFY4	ARHGAP22	NA	chr10:49654079-49662001	inter
CUST_29756_PI429285431	5.8962226	P	5.9061413	P	0.993148460622022	0	lncRNA	31518-1_{1..726}	n333441|BC017856|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000089435|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000089435|4.2614600|-0.2843226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333441|BC017856|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000089435|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000089435|4.2614600|-0.2843226	chr11	 46832552	 46833277	-	NA	NA	NA	NA	CKAP5	NA	chr11:46822552-46867843	inner
CUST_33017_PI429285431	0.878826	A	0.88311195	A	0.99703361428384	0	lncRNA	34633-1_{1..364}	n339700|BC032034|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2145|NULL|-1.0454300|-0.3930140	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339700|BC032034|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2145|NULL|-1.0454300|-0.3930140	chr3	178819153	178819516	-	NA	NA	NA	NA	PIK3CA	NA	chr3:178866311-178875761	inter
CUST_34974_PI429285431	5.113714	P	4.146393	P	1.9552065183569	0	lncRNA	36391-1_{1..1425}	n341898|BC040303|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4378|NULL|-1.1588000|-0.2313280	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341898|BC040303|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4378|NULL|-1.1588000|-0.2313280	chr6	 64280909	 64282333	-	NA	NA	NA	NA	PTP4A1	NA	chr6:64281920-64292308	inner
CUST_12675_PI429285431	2.2573597	A	1.4269483	A	1.77819236070906	0	lncRNA	14292-1_{1..680}	lnc-IGIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGIP-1:1	chr5	139531252	139531931	+	lnc-IGIP-1	lnc-IGIP-1:1	XLOC_004576	linc-C5orf32-2	NA	NA	NA	inter
CUST_51650_PI429285431	8.548636	P	8.709859	P	0.8942666626722	0	lncRNA	55219-2_{3001..3705}	hg19_lincRNAsTranscripts_TCONS_l2_00011390 range=chr17:60214314-60218096 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011390 range=chr17:60214314-60218096 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 60217314	 60218018	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45015_PI429285431	7.1933312	P	7.328606	P	0.910496388594193	0	lncRNA	49517-1_{1..1549}	"gi|299523044|ref|NR_033812.1| Homo sapiens cytochrome P450, family 3, subfamily A, polypeptide 5 (CYP3A5), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299523044|ref|NR_033812.1| Homo sapiens cytochrome P450, family 3, subfamily A, polypeptide 5 (CYP3A5), transcript variant 8, non-coding RNA"	Chr7	 99257842	 99259390	-	1577	NR_033812.1	NA	NA	NA	NA	NA	inter
CUST_3334_PI429285431	0.92284983	A	0.9814591	A	0.960189277151315	0	lncRNA	3313-1_{1..712}	"transcript_id ""ENST00000520068.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520068.1"" | genecode_v17"	chr8	137802076	137802787	+	ENSG00000254101.1	ENST00000520068.1	RP11-30J20.1	RP11-30J20.1-005	NA	NA	NA	inter
CUST_16807_PI429285431	2.254967	A	1.8141721	A	1.35735199891257	0	lncRNA	18513-1_{1..429}	lnc-AC136604.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC136604.1-1:1	chr5	179085390	179085818	+	lnc-AC136604.1-1	lnc-AC136604.1-1:1	XLOC_004677	linc-CANX-1	CBY3	NA	chr5:179078291-179095482	inter
CUST_26731_PI429285431	5.550184	P	6.259936	P	0.611425234116744	0	lncRNA	28226-3_{6001..8497}	n5181|U56440|His-1RNA|Homosapiens|His-1|NONCODEv2.0|n5181|NULL|-1.5906100|-0.3761680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n5181|U56440|His-1RNA|Homosapiens|His-1|NONCODEv2.0|n5181|NULL|-1.5906100|-0.3761680	chr2	145462943	145465439	+	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.60"	NA	inter
LNCA_21_P0006126	0.8780434	A	0.8802831	A	0.998448762674037	0	lncRNA	TCONS_00015918	NA	NA	NA	NA	XLOC_007281	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007281), lincRNA [TCONS_00015918]"	chr9:11277905-11277964	hs|9p23	Agilent_HUMAN_G3V2	TCONS_00015918	TCONS_00015918	chr9	 11277905	 11277964	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17303_PI429285431	10.3622	P	10.411847	P	0.966172704065091	0	lncRNA	19021-1_{1..449}	lnc-SRGN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRGN-1:1	chr10	 70829851	 70830299	+	lnc-SRGN-1	lnc-SRGN-1:1	XLOC_008504	linc-SRGN	NA	NA	NA	inter
CUST_12074_PI429285431	0.8868761	A	0.88026303	A	1.00459435264847	0	lncRNA	13665-1_{1..2413}	lnc-SBF2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SBF2-2:1	chr11	  9786904	  9789316	-	lnc-SBF2-2	lnc-SBF2-2:1	XLOC_009371	linc-TMEM41B	NA	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_2109_PI429285431	0.9117847	A	1.2312467	A	0.801368662814605	0	lncRNA	2100-1_{1..509}	"transcript_id ""ENST00000504244.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504244.1"" | genecode_v17"	chr5	 20612734	 20613242	-	ENSG00000249490.1	ENST00000504244.1	CTD-2333M24.1	CTD-2333M24.1-001	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00"	NA	inter
CUST_6700_PI429285431	2.9456096	A	2.9231799	P	1.01566856797648	0	lncRNA	6649-1_{1..695}	"transcript_id ""ENST00000435163.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435163.1"" | genecode_v17"	chr20	 42839892	 42840586	+	ENSG00000223891.1	ENST00000435163.1	RP5-995J12.2	RP5-995J12.2-003	C20orf111	NA	chr20:42829892-42839546	inter
CUST_2020_PI429285431	4.8901663	P	4.9750557	P	0.942856814510507	0	lncRNA	2011-1_{1..677}	"transcript_id ""ENST00000502419.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502419.1"" | genecode_v17"	chr4	189081219	189081895	+	ENSG00000248370.1	ENST00000502419.1	RP11-366H4.1	RP11-366H4.1-001	NA	NA	NA	inter
CUST_42219_PI429285431	4.713999	P	5.374517	P	0.632651102670542	0	lncRNA	44321-1_{1..94}	ENST00000362196 ncrna:miRNA chromosome:GRCh37:19:46142252:46142345:-1 gene:ENSG00000199066 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362196 ncrna:miRNA chromosome:GRCh37:19:46142252:46142345:-1 gene:ENSG00000199066 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 46142252	 46142345	-	ENSG00000199066	ENST00000362196	NA	NA	EML2	NA	chr19:46132252-46148775	inter
CUST_19718_PI429285431	0.8858444	A	0.894106	A	0.994289860428075	0	lncRNA	21375-1_{1..477}	lnc-PHOX2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHOX2A-1:1	chr11	 71920091	 71920567	-	lnc-PHOX2A-1	lnc-PHOX2A-1:1	ENSG00000204971.3	RP11-807H22.7	FOLR2	NA	chr11:71927819-71930285	inter
CUST_31160_PI429285431	4.4222946	P	4.2286415	P	1.14365594491454	0	lncRNA	32955-1_{1..218}	n337552|EF491794|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395521_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395521_05|0.7508280|-0.1937681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337552|EF491794|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395521_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395521_05|0.7508280|-0.1937681	chr2	111290091	111290308	-	NA	NA	NA	NA	RGPD6	NA	chr2:111280091-111301201	inner
CUST_35559_PI429285431	8.113474	P	8.364463	P	0.840320159329897	0	lncRNA	36973-1_{1..1537}	n342689|BX648020|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5191|NULL|-0.4515200|-0.1783166	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342689|BX648020|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5191|NULL|-0.4515200|-0.1783166	chr17	 28863441	 28864977	-	NA	NA	NA	NA	GOSR1	NA	chr17:28853441-28853832	inner
CUST_39136_PI429285431	3.309105	P	3.309105	A	1	0	lncRNA	40112-1_{1..1945}	n385747|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dbv.1||4.8043800|-0.2836783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385747|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dbv.1||4.8043800|-0.2836783	chrX	 27608529	 27610473	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42138_PI429285431	0.8902148	A	0.88586557	A	1.00301920515877	0	lncRNA	44155-1_{1..84}	ENST00000585233 ncrna:miRNA chromosome:GRCh37:16:76902833:76902916:1 gene:ENSG00000266426 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585233 ncrna:miRNA chromosome:GRCh37:16:76902833:76902916:1 gene:ENSG00000266426 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 76902833	 76902916	+	ENSG00000266426	ENST00000585233	NA	NA	NA	NA	NA	inter
CUST_6310_PI429285431	0.9039546	A	0.9080702	A	0.997151348593033	0	lncRNA	6234-1_{1..481}	"transcript_id ""ENST00000591008.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591008.1"" | genecode_v17"	chr19	  4769198	  4769678	+	ENSG00000176840.7	ENST00000591008.1	MIR7-3HG	MIR7-3HG-007	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10"	NA	inter
CUST_25544_PI429285431	4.5352707	P	5.002063	P	0.723571605631242	0	lncRNA	27074-1_{1..657}	lnc-PDCD11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDCD11-1:1	chr10	105222187	105222843	+	lnc-PDCD11-1	lnc-PDCD11-1:1	ENSG00000234699.1	RP11-225H22.4	CALHM1	NA	chr10:105213144-105218648	inter
CUST_38678_PI429285431	1.0645272	A	0.88294625	A	1.13412601507436	0	lncRNA	39677-1_{1..2943}	n384011|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yup.1||-1.0214300|-0.2807600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384011|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yup.1||-1.0214300|-0.2807600	chr21	 36195760	 36198702	-	NA	NA	NA	NA	RUNX1	"hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-30.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-11.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40chr21:36185760-36208703"	NA	inner
CUST_19070_PI429285431	0.8781974	A	0.8802089	A	0.998606705982942	0	lncRNA	20761-1_{1..588}	lnc-OR13C4-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>lnc-OR13C4-4:2	chr9	106086939	106087526	-	lnc-OR13C4-4	lnc-OR13C4-4:2	ENSG00000225564	RP11-341A22.2	NA	NA	NA	inter
CUST_49152_PI429285431	2.9887435	A	2.001664	A	1.98216835130383	0	lncRNA	52978-1_{1..2606}	hg19_lincRNAsTranscripts_TCONS_l2_00021276 range=chr4:122996584-122999473 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021276 range=chr4:122996584-122999473 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	122996584	122999189	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37565_PI429285431	6.5009623	P	6.463237	P	1.02649407490916	0	lncRNA	38667-1_{1..632}	n346041|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1591|NULL|-1.2558100|-0.1732397	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346041|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1591|NULL|-1.2558100|-0.1732397	chr16	 21829981	 21830612	-	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-17.40"	NA	inter
CUST_33879_PI429285431	0.88178927	A	0.8802349	A	1.00107798779467	0	lncRNA	35423-1_{1..643}	n340668|CR611965|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3130|NULL|-0.8444130|-0.1839543	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340668|CR611965|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3130|NULL|-0.8444130|-0.1839543	chr5	141323143	141323785	-	NA	NA	NA	NA	KIAA0141	NA	chr5:141313143-141321612	inter
CUST_7729_PI429285431	2.1421423	A	1.1384639	A	2.00510585153677	0	lncRNA	9360-1_{1..918}	lnc-OSBPL6-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OSBPL6-2:6	chr2	179298109	179299026	+	lnc-OSBPL6-2	lnc-OSBPL6-2:6	ENSG00000223960	AC009948.5	PRKRA	NA	chr2:179296141-179308716	inner
CUST_51913_PI429285431	3.669321	P	4.5350075	P	0.548785207760001	0	lncRNA	55456-1_{1..670}	hg19_lincRNAsTranscripts_TCONS_l2_00016542 range=chr20:25785745-25846270 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016542 range=chr20:25785745-25846270 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	 25785745	 25786414	-	NA	NA	NA	NA	LOC100289375	NA	chr20:25825857-25848100	inter
CUST_5999_PI429285431	1.235146	A	2.0039432	A	0.586906584946639	0	lncRNA	5925-1_{1..877}	"transcript_id ""ENST00000586185.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586185.1"" | genecode_v17"	chr17	 76614844	 76615720	-	ENSG00000267123.1	ENST00000586185.1	CTD-2357A8.3	CTD-2357A8.3-002	NA	NA	NA	inter
CUST_48486_PI429285431	6.1835465	P	6.092928	P	1.0648265880502	0	lncRNA	52339-1_{1..954}	hg19_lincRNAsTranscripts_TCONS_l2_00001844 range=chr1:230020074-230027818 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001844 range=chr1:230020074-230027818 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	230020074	230021027	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13688_PI429285431	6.5769496	P	6.707511	P	0.913475917592815	0	lncRNA	15328-1_{1..3000}	lnc-AC092327.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092327.1-1:2	chr16	 86383157	 86386156	-	lnc-AC092327.1-1	lnc-AC092327.1-1:2	XLOC_012045	linc-COX4NB-6	NA	NA	NA	inter
CUST_10141_PI429285431	1.0870694	A	1.3110924	A	0.856174634971865	0	lncRNA	11663-1_{1..357}	lnc-SBDS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SBDS-2:1	chr7	 66800855	 66801211	-	lnc-SBDS-2	lnc-SBDS-2:1	XLOC_006486	linc-SBDS-5	NA	NA	NA	inter
CUST_37123_PI429285431	6.9988575	P	7.045983	P	0.967862828872028	0	lncRNA	38246-1_{1..743}	n345564|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1113|NULL|-1.3933700|-0.3980556	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345564|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1113|NULL|-1.3933700|-0.3980556	chr2	203194361	203195103	-	NA	NA	NA	NA	NA	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20"	NA	inter
CUST_23993_PI429285431	1.6875175	A	2.3279264	A	0.641531095211846	0	lncRNA	25548-1_{1..1752}	lnc-GAP43-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GAP43-6:2	chr3	116435035	116436786	+	lnc-GAP43-6	lnc-GAP43-6:2	ENSG00000243197.1	LSAMP-AS3	NA	NA	NA	inter
CUST_37264_PI429285431	5.794791	P	7.095005	P	0.406065960526806	0	lncRNA	38371-1_{1..999}	n345702|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1251|NULL|-1.3044900|-0.3721694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345702|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1251|NULL|-1.3044900|-0.3721694	chr3	 98700012	 98701010	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31957_PI429285431	5.126365	P	4.8393407	P	1.22012106117955	0	lncRNA	33680-2_{3001..3617}	n338514|AK127526|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|911|NULL|-1.0420500|-0.2351258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338514|AK127526|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|911|NULL|-1.0420500|-0.2351258	chr1	210854656	210855272	-	NA	NA	NA	NA	HHAT	NA	chr1:210841656-210849638	inner
CUST_28091_PI429285431	5.8409567	P	6.0050693	P	0.892477312352871	0	lncRNA	29712-1_{1..567}	n325362|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324720|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324720|-1.2208400|-0.2066427	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325362|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324720|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324720|-1.2208400|-0.2066427	chr2	 26747625	 26748191	-	NA	NA	NA	NA	OTOF	NA	chr2:26737625-26760836	inner
CUST_9335_PI429285431	0.8865391	A	0.8988603	A	0.991495960618559	0	lncRNA	10843-1_{1..3000}	lnc-PVRL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PVRL1-1:1	chr11	119488907	119491906	-	lnc-PVRL1-1	lnc-PVRL1-1:1	XLOC_009577	linc-THY1	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-20.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0,hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60"	NA	inter
CUST_50427_PI429285431	18.001608	P	17.990623	P	1.00764328367952	0	lncRNA	54131-1_{1..565}	hg19_lincRNAsTranscripts_TCONS_l2_00030171 range=chrX:30648436-30649080 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030171 range=chrX:30648436-30649080 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 30648436	 30649000	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37930_PI429285431	2.0841596	A	2.8093376	A	0.604922404559055	0	lncRNA	39019-1_{1..1491}	n346474|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2024|NULL|-1.3083200|-0.2799120	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346474|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2024|NULL|-1.3083200|-0.2799120	chr10	 75489779	 75491269	+	NA	NA	NA	NA	SEC24C	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr10:75504131-75507828"	NA	inter
CUST_15_PI429285431	6.0146837	P	6.0956635	P	0.945415353960211	0	lncRNA	14-1_{1..734}	"transcript_id ""ENST00000438705.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000438705.3"" | genecode_v17"	chr7	 45022684	 45023417	-	ENSG00000232956.3	ENST00000438705.3	SNHG15	SNHG15-009	MYO1G	NA	chr7:45012684-45018704	inter
CUST_27666_PI429285431	0.8998024	A	0.9074203	A	0.994733590508876	0	lncRNA	29244-1_{1..795}	n324873|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171045|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171045|-0.9989670|-0.3324887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324873|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171045|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171045|-0.9989670|-0.3324887	chr21	 22303133	 22303927	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48887_PI429285431	0.8853941	A	0.8911134	A	0.996043530860096	0	lncRNA	52726-1_{1..645}	hg19_lincRNAsTranscripts_TCONS_l2_00019369 range=chr3:84911873-84918681 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019369 range=chr3:84911873-84918681 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 84911873	 84912517	-	NA	NA	NA	NA	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20"	NA	inter
CUST_10664_PI429285431	0.90114504	A	0.9125553	A	0.992122204218153	0	lncRNA	12197-1_{1..929}	lnc-CCRN4L-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCRN4L-5:3	chr4	138873474	138874402	+	lnc-CCRN4L-5	lnc-CCRN4L-5:3	XLOC_003706	linc-CCRN4L-5	NA	NA	NA	inter
CUST_44729_PI429285431	6.7321815	P	6.7405806	P	0.994195101426935	0	lncRNA	49283-1_{1..1691}	"gi|332800989|ref|NR_038190.1| Homo sapiens advanced glycosylation end product-specific receptor (AGER), transcript variant 10, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|332800989|ref|NR_038190.1| Homo sapiens advanced glycosylation end product-specific receptor (AGER), transcript variant 10, non-coding RNA"	NT_167249.1	  3496473	  3498163	-	177	NR_038190.1	NA	NA	NA	NA	NA	Unknown
CUST_20065_PI429285431	8.149847	P	7.7893023	P	1.28391055582744	0	lncRNA	21716-1_{1..1018}	lnc-WDR73-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR73-2:1	chr15	 85157654	 85158671	-	lnc-WDR73-2	lnc-WDR73-2:1	ENSG00000256278.1	RP11-182J1.5	ZSCAN2	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80chr15:85147654-85166947"	NA	inner
CUST_49879_PI429285431	7.6710076	P	7.772552	P	0.932034717399525	0	lncRNA	53630-1_{1..472}	hg19_lincRNAsTranscripts_TCONS_l2_00026050 range=chr7:76634718-76641293 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026050 range=chr7:76634718-76641293 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 76634718	 76635189	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5026_PI429285431	10.41949	P	10.471453	P	0.964622923416313	0	lncRNA	4966-1_{1..924}	"transcript_id ""ENST00000556637.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556637.1"" | genecode_v17"	chr14	101420945	101421868	+	ENSG00000225746.4	ENST00000556637.1	AL132709.5	AL132709.5-004	NA	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-19.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60"	NA	inter
CUST_3120_PI429285431	6.055757	P	6.0510416	P	1.0032738134751	0	lncRNA	3099-1_{1..567}	"transcript_id ""ENST00000520370.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520370.1"" | genecode_v17"	chr8	 58405443	 58406009	+	ENSG00000253821.1	ENST00000520370.1	RP11-246K15.1	RP11-246K15.1-001	NA	NA	NA	inter
CUST_30709_PI429285431	9.985161	P	10.503349	P	0.698248270406765	0	lncRNA	32491-1_{1..1697}	n336220|X97053|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324966|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324966|1.1166100|-0.0125794	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336220|X97053|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324966|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324966|1.1166100|-0.0125794	chr8	144997131	144998827	+	NA	NA	NA	NA	PLEC	"hg19_refFlat_PLEC:range=chr8:144990345-1450166835'pad=0,hg19_refFlat_PLEC:range=chr8:144990345-1450166835'pad=0 3'pad=0 strand=- repeatMasking=none,-109.60;hg19_refFlat_PLEC:range=chr8:144990345-1450476405'pad=0,hg19_refFlat_PLEC:range=chr8:144990345-1450476405'pad=0 3'pad=0 strand=- repeatMasking=none,-109.60;hg19_refFlat_PLEC:range=chr8:144990345-1450136295'pad=0,hg19_refFlat_PLEC:range=chr8:144990345-1450136295'pad=0 3'pad=0 strand=- repeatMasking=none,-109.60;hg19_refFlat_PLEC:range=chr8:144990345-1450279395'pad=0,hg19_refFlat_PLEC:range=chr8:144990345-1450279395'pad=0 3'pad=0 strand=- repeatMasking=none,-109.60;hg19_refFlat_PLEC:range=chr8:144990345-1450248745'pad=0,hg19_refFlat_PLEC:range=chr8:144990345-1450248745'pad=0 3'pad=0 strand=- repeatMasking=none,-109.60;hg19_refFlat_PLEC:range=chr8:144990345-1450180585'pad=0,hg19_refFlat_PLEC:range=chr8:144990345-1450180585'pad=0 3'pad=0 strand=- repeatMasking=none,-109.60;hg19_refFlat_PLEC:range=chr8:144990345-1450495375'pad=0,hg19_refFlat_PLEC:range=chr8:144990345-1450495375'pad=0 3'pad=0 strand=- repeatMasking=none,-109.60;hg19_refFlat_PLEC:range=chr8:144990345-1450188315'pad=0,hg19_refFlat_PLEC:range=chr8:144990345-1450188315'pad=0 3'pad=0 strand=- repeatMasking=none,-109.60chr8:144989321-145008828"	NA	inner
CUST_40698_PI429285431	0.9075831	A	0.92382145	A	0.988807540379512	0	lncRNA	41435-1_{1..1360}	n410258|NR_037174_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037174_3||0.4163520|-0.2471729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410258|NR_037174_3|lncRNA|Homosapiens||RefGeneNoncode|NR_037174_3||0.4163520|-0.2471729	chr6	  4093240	  4094599	+	NA	NA	NA	NA	C6orf201	"hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-20.80;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90chr6:4083240-4105655"	NA	inner
CUST_44604_PI429285431	3.6109831	P	1.6282022	A	3.95254229356368	0	lncRNA	49180-1_{1..3000}	"gi|372626427|ref|NR_045994.1| Homo sapiens eukaryotic translation termination factor 1 (ETF1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372626427|ref|NR_045994.1| Homo sapiens eukaryotic translation termination factor 1 (ETF1), transcript variant 2, non-coding RNA"	Chr5	137841782	137844781	-	2107	NR_045994.1	NA	NA	NA	NA	NA	inter
CUST_16063_PI429285431	1.913115	A	1.1544664	A	1.69190504245007	0	lncRNA	17766-1_{1..312}	lnc-ELAVL4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ELAVL4-3:1	chr1	 50790603	 50790914	+	lnc-ELAVL4-3	lnc-ELAVL4-3:1	XLOC_000186	linc-CDKN2C-3	NA	NA	NA	inter
CUST_27014_PI429285431	0.8915182	A	0.9062249	A	0.989857874133905	0	lncRNA	28543-1_{1..947}	n324118|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052435|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052435|-1.0173800|-0.2415729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324118|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052435|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052435|-1.0173800|-0.2415729	chr9	 37063527	 37064473	-	NA	NA	NA	NA	NA	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-23.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-22.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70"	NA	inter
CUST_27876_PI429285431	4.8479676	P	5.1472135	P	0.812677073523137	0	lncRNA	29469-1_{1..678}	n325112|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331758|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331758|-1.2552600|-0.3170339	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325112|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331758|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331758|-1.2552600|-0.3170339	chr2	229056220	229056897	-	NA	NA	NA	NA	SPHKAP	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50chr2:229046220-229046361"	NA	inter
CUST_37668_PI429285431	2.3383806	A	3.1590395	A	0.566183299366457	0	lncRNA	38761-1_{1..722}	n346153|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1703|NULL|-1.7584600|-0.2846766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346153|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1703|NULL|-1.7584600|-0.2846766	chr1	101871714	101872435	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44757_PI429285431	8.373682	P	8.127955	P	1.18569011101341	0	lncRNA	49303-1_{1..1913}	"gi|338968875|ref|NR_040101.1| Homo sapiens kelch domain containing 3 (KLHDC3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338968875|ref|NR_040101.1| Homo sapiens kelch domain containing 3 (KLHDC3), transcript variant 3, non-coding RNA"	Chr6	 42981841	 42983753	+	116138	NR_040101.1	NA	NA	NA	NA	NA	inter
CUST_534_PI429285431	1.6733341	A	1.7996612	A	0.916160901391095	0	lncRNA	526-1_{1..930}	"transcript_id ""ENST00000432296.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000432296.1"" | genecode_v17"	chr1	198776787	198777716	-	ENSG00000229989.3	ENST00000432296.1	RP11-31E23.1	RP11-31E23.1-001	NA	NA	NA	inter
CUST_29355_PI429285431	4.354252	P	3.4767768	P	1.83715735434624	0	lncRNA	31107-1_{1..419}	n332612|AL080074|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000024195|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000024195|-1.1901500|-0.4603623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332612|AL080074|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000024195|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000024195|-1.1901500|-0.4603623	chr1	243664987	243665405	-	NA	NA	NA	NA	AKT3	NA	chr1:243654987-243675406	inner
CUST_32059_PI429285431	2.0911188	A	0.8792253	A	2.31641460794647	0	lncRNA	33773-2_{3001..3485}	n338622|AL137761|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1028|NULL|-1.1110000|-0.3229078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338622|AL137761|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1028|NULL|-1.1110000|-0.3229078	chr2	    41813	    42297	-	NA	NA	NA	NA	FAM110C	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30chr2:38814-46588"	NA	inner
CUST_1619_PI429285431	1.2373621	A	1.2736554	A	0.975157191850735	0	lncRNA	1605-1_{1..2880}	"transcript_id ""ENST00000414120.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414120.1"" | genecode_v17"	chr3	194018988	194021867	-	ENSG00000214145.2	ENST00000414120.1	RP11-513G11.1	RP11-513G11.1-001	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40"	NA	inter
CUST_19361_PI429285431	9.828337	P	9.691282	P	1.09965807088448	0	lncRNA	21024-1_{1..130}	lnc-SLC25A30-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC25A30-3:1	chr13	 45911615	 45911744	-	lnc-SLC25A30-3	lnc-SLC25A30-3:1	ENSG00000255137.1	RP11-290D2.4	TPT1	NA	chr13:45911304-45915297	inter
CUST_47517_PI429285431	4.8182044	P	4.689568	P	1.09325989031288	0	lncRNA	51528-1_{1..2355}	"gi|240849182|ref|NR_027834.1| Homo sapiens apolipoprotein L, 3 (APOL3), transcript variant alpha/b, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|240849182|ref|NR_027834.1| Homo sapiens apolipoprotein L, 3 (APOL3), transcript variant alpha/b, non-coding RNA"	Chr22	 36536371	 36538725	-	80833	NR_027834.1	NA	NA	NA	NA	NA	inter
CUST_4760_PI429285431	0.88384366	A	0.8816711	A	1.00150703828117	0	lncRNA	4705-1_{1..494}	"transcript_id ""ENST00000548775.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548775.1"" | genecode_v17"	chr14	 29299651	 29300144	+	ENSG00000258038.1	ENST00000548775.1	CTD-2384A14.1	CTD-2384A14.1-005	NA	NA	NA	inter
CUST_12257_PI429285431	4.9756627	P	4.878257	P	1.06984789731315	0	lncRNA	13863-1_{1..303}	lnc-PHACTR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHACTR1-1:1	chr6	 13329957	 13330259	+	lnc-PHACTR1-1	lnc-PHACTR1-1:1	XLOC_005176	linc-SIRT5	TBC1D7	NA	chr6:13319957-13328787	inter
CUST_41855_PI429285431	5.5416408	P	6.573886	P	0.488948628104702	0	lncRNA	43507-1_{1..73}	ENST00000384972 ncrna:miRNA chromosome:GRCh37:7:127847924:127847996:1 gene:ENSG00000207705 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384972 ncrna:miRNA chromosome:GRCh37:7:127847924:127847996:1 gene:ENSG00000207705 gene_biotype:miRNA transcript_biotype:miRNA	chr7	127847924	127847996	+	ENSG00000207705	ENST00000384972	NA	NA	NA	NA	NA	inter
CUST_7998_PI429285431	1.2945654	A	2.1576815	A	0.549763830969401	0	lncRNA	9609-1_{1..2793}	lnc-CHST4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CHST4-3:1	chr16	 71497161	 71499953	+	lnc-CHST4-3	lnc-CHST4-3:1	ENSG00000247324	AC010547.1	ZNF23	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.11;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20chr16:71487161-71496117"	NA	inter
CUST_23717_PI429285431	4.18707	P	4.3317394	P	0.904586643874176	0	lncRNA	25281-1_{1..854}	lnc-SIRT4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SIRT4-1:1	chr12	120650178	120651031	+	lnc-SIRT4-1	lnc-SIRT4-1:1	ENSG00000255857.1	RP1-278C19.3	PXN	"hg19_refFlat_PXN:range=chr12:120650117-1206607595'pad=0,hg19_refFlat_PXN:range=chr12:120650117-1206607595'pad=0 3'pad=0 strand=- repeatMasking=none,-96.10;hg19_refFlat_PXN:range=chr12:120650117-1207034325'pad=0,hg19_refFlat_PXN:range=chr12:120650117-1207034325'pad=0 3'pad=0 strand=- repeatMasking=none,-96.10chr12:120648250-120660722"	NA	inner
CUST_13725_PI429285431	5.0105104	P	4.984005	P	1.01854194941077	0	lncRNA	15363-1_{1..365}	lnc-SS18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SS18-1:1	chr18	 23538991	 23539355	-	lnc-SS18-1	lnc-SS18-1:1	XLOC_012794	linc-ZNF521	NA	NA	NA	inter
CUST_24697_PI429285431	2.2505655	A	2.5702446	A	0.801248080125826	0	lncRNA	26243-1_{1..658}	lnc-MYOC-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYOC-1:3	chr1	171193136	171193793	-	lnc-MYOC-1	lnc-MYOC-1:3	ENSG00000225243.1	RP1-127D3.4	NA	"hg19_refFlat_FMO2:range=chr1:171154853-1711780925'pad=0,hg19_refFlat_FMO2:range=chr1:171154853-1711780925'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00"	NA	inter
CUST_4228_PI429285431	5.743368	P	5.7384276	P	1.00343029437043	0	lncRNA	4187-1_{1..470}	"transcript_id ""ENST00000457989.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457989.1"" | genecode_v17"	chr12	 40550041	 40550510	+	ENSG00000223914.1	ENST00000457989.1	AC079630.2	AC079630.2-001	NA	NA	NA	inter
CUST_27527_PI429285431	1.3931057	A	1.4982098	A	0.929737853450345	0	lncRNA	29103-1_{1..576}	n324712|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320113|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320113|0.2702650|-0.1541077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324712|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320113|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320113|0.2702650|-0.1541077	chr22	 20006236	 20006811	-	NA	NA	NA	NA	C22orf25	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60chr22:20008631-20019256"	NA	inner
CUST_44351_PI429285431	4.428969	P	5.1079555	P	0.624603907522248	0	lncRNA	48973-3_{6001..6810}	"gi|223890188|ref|NR_026892.1| Homo sapiens AFAP1 antisense RNA 1 (AFAP1-AS1), antisense RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223890188|ref|NR_026892.1| Homo sapiens AFAP1 antisense RNA 1 (AFAP1-AS1), antisense RNA"	NA	NA	NA	NA	NA	NR_026892.1	NA	NA	NA	"hg19_refFlat_AFAP1:range=chr4:7765492-78738055'pad=0,hg19_refFlat_AFAP1:range=chr4:7765492-78738055'pad=0 3'pad=0 strand=- repeatMasking=none,-102.50"	NA	Unknown
LNCA_21_P0014788	6.9057355	P	7.0894384	P	0.880440307513576	0	lncRNA	XR_132572	XR_132572	XR_132572	NA	Hs.653611	LOC100652971	uncharacterized LOC100652971	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652971 (LOC100652971), miscRNA [XR_132572]"	chr10:32556974-32557033	hs|10p11.22	Agilent_HUMAN_G3V2	XR_132572	XR_132572	chr10	 32556974	 32557033	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40991_PI429285431	9.56747	P	9.640454	P	0.950669644435093	0	lncRNA	41659-1_{1..2911}	n411139|NR_038967|lncRNA|Homosapiens||RefGeneNoncode|NR_038967||1.8546300|-0.1448836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411139|NR_038967|lncRNA|Homosapiens||RefGeneNoncode|NR_038967||1.8546300|-0.1448836	chr7	102004307	102007217	+	NA	NA	NA	NA	PRKRIP1	NA	chr7:102036804-102067129	inner
CUST_4894_PI429285431	3.9833586	P	4.6237984	P	0.641517354886974	0	lncRNA	4836-1_{1..159}	"transcript_id ""ENST00000561000.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561000.1"" | genecode_v17"	chr14	 75761107	 75761265	+	ENSG00000259687.1	ENST00000561000.1	RP11-293M10.5	RP11-293M10.5-002	NA	NA	NA	inter
CUST_4917_PI429285431	3.870685	P	4.1363297	P	0.831826931489519	0	lncRNA	4859-1_{1..428}	"transcript_id ""ENST00000555150.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555150.1"" | genecode_v17"	chr14	 83108976	 83109403	+	ENSG00000258743.1	ENST00000555150.1	RP11-406A9.2	RP11-406A9.2-001	NA	NA	NA	inter
CUST_3550_PI429285431	4.44658	P	5.6621304	P	0.430608767735385	0	lncRNA	3520-1_{1..1846}	"transcript_id ""ENST00000436510.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436510.1"" | genecode_v17"	chr9	132192931	132194776	-	ENSG00000230676.1	ENST00000436510.1	RP11-65J3.3	RP11-65J3.3-002	NA	NA	NA	inter
CUST_15108_PI429285431	0.8728678	A	0.87770176	A	0.996654961404243	0	lncRNA	16773-1_{1..475}	lnc-PCDH20-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH20-1:2	chr13	 62599517	 62599991	-	lnc-PCDH20-1	lnc-PCDH20-1:2	XLOC_010635	linc-PCDH20-1	NA	NA	NA	inter
CUST_33984_PI429285431	1.6920353	A	1.7770748	A	0.942758723478108	0	lncRNA	35521-1_{1..2353}	n340797|AL137279|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3260|NULL|-1.1748500|-0.4516272	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340797|AL137279|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3260|NULL|-1.1748500|-0.4516272	chr6	   905463	   907815	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8021_PI429285431	3.7490556	P	4.228224	P	0.717391024241868	0	lncRNA	9631-3_{6001..6434}	lnc-CDS1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CDS1-2:1	chr4	 85933160	 85933593	+	lnc-CDS1-2	lnc-CDS1-2:1	ENSG00000180769	NCRNA00247	NA	NA	NA	inter
CUST_26370_PI429285431	4.956245	P	5.0213504	P	0.95587548096633	0	lncRNA	27877-1_{1..1053}	lnc-AKIP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AKIP1-1:1	chr11	  8997712	  8998764	+	lnc-AKIP1-1	lnc-AKIP1-1:1	ENSG00000254860.1	TMEM9B-AS1	NRIP3	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00chr11:9002123-9007830"	NA	inter
CUST_42472_PI429285431	6.533802	P	6.97878	P	0.734595518575619	0	lncRNA	45228-1_{1..134}	ENST00000384384 ncrna:snoRNA chromosome:GRCh37:11:93463679:93463812:-1 gene:ENSG00000207112 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384384 ncrna:snoRNA chromosome:GRCh37:11:93463679:93463812:-1 gene:ENSG00000207112 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 93463679	 93463812	-	ENSG00000207112	ENST00000384384	NA	NA	KIAA1731	NA	chr11:93453679-93463522	inter
LNCA_21_P0002469	5.899349	P	6.1754208	P	0.82583656370565	0	lncRNA	TCONS_00004324	NA	NA	NA	NA	XLOC_002191	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002191), lincRNA [TCONS_00004324]"	chr2:85967302-85958827	hs|2p11.2	Agilent_HUMAN_G3V2	TCONS_00004324	TCONS_00004324	chr2	 85958827	 85967302	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40119_PI429285431	4.559395	P	4.8774223	P	0.802165986887651	0	lncRNA	40962-1_{1..1778}	n407666|NR_027135|lncRNA|Homosapiens||RefGeneNoncode|NR_027135||2.3753800|-0.2119165	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407666|NR_027135|lncRNA|Homosapiens||RefGeneNoncode|NR_027135||2.3753800|-0.2119165	chr19	 58618971	 58620748	-	NA	NA	NA	NA	ZSCAN18	NA	chr19:58608971-58629793	inter
CUST_28185_PI429285431	6.968201	P	6.86596	P	1.07343958785836	0	lncRNA	29812-1_{1..1058}	n325465|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322564|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322564|-0.6683370|-0.3289169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325465|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322564|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322564|-0.6683370|-0.3289169	chr2	  5675909	  5676966	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10"	NA	inter
CUST_7888_PI429285431	3.6399822	P	3.1554651	A	1.39911747352635	0	lncRNA	9505-1_{1..1125}	lnc-TSHR-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TSHR-2:1	chr14	 81687983	 81689107	+	lnc-TSHR-2	lnc-TSHR-2:1	ENSG00000247694	AL136040.2	GTF2A1	NA	chr14:81677983-81687575	inter
CUST_8514_PI429285431	0.92463636	A	0.901023	A	1.01650221579075	0	lncRNA	10076-1_{1..584}	lnc-NTM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTM-1:1	chr11	131170253	131170836	+	lnc-NTM-1	lnc-NTM-1:1	ENSG00000231698	XLOC_009340	NA	NA	NA	inter
LNCA_21_P0014513	2.663306	A	2.664188	A	0.999388831026634	0	lncRNA	XR_110167	XR_110167	XR_110167	NA	Hs.670185	LOC100507115	uncharacterized LOC100507115	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507115 (LOC100507115), miscRNA [XR_110167]"	chr6:119502804-119502863	hs|6q22.31	Agilent_HUMAN_G3V2	XR_110167	XR_110167	chr6	119502804	119502863	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18445_PI429285431	1.5997889	A	1.0378039	A	1.47629905621511	0	lncRNA	20169-1_{1..576}	lnc-C3orf32-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C3orf32-2:1	chr3	  8653544	  8654119	-	lnc-C3orf32-2	lnc-C3orf32-2:1	ENSG00000227110	AC087859.1	C3orf32	NA	chr3:8661317-8663610	inter
CUST_31281_PI429285431	0.902099	A	0.9163899	A	0.990143202778819	0	lncRNA	33069-1_{1..911}	n337741|M20838|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|123|NULL|-0.9653600|-0.3043971	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337741|M20838|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|123|NULL|-0.9653600|-0.3043971	chr1	 21612117	 21613027	+	NA	NA	NA	NA	ECE1	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80chr1:21602117-21623064"	NA	inner
CUST_13368_PI429285431	4.8577805	P	4.113965	P	1.67459880415783	0	lncRNA	15004-3_{6001..8396}	lnc-PCYOX1L-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCYOX1L-2:2	chr5	148806044	148808439	+	lnc-PCYOX1L-2	lnc-PCYOX1L-2:2	XLOC_004598	linc-ARHGEF37-2	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.01;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60"	NA	inter
CUST_29724_PI429285431	7.404449	P	7.2689333	P	1.09848540381566	0	lncRNA	31486-1_{1..882}	n333395|BC007532|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086833|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086833|2.0687600|-0.2051985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333395|BC007532|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086833|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086833|2.0687600|-0.2051985	chr20	 47740921	 47741802	-	NA	NA	NA	NA	STAU1	NA	chr20:47730921-47804904	inner
CUST_19839_PI429285431	3.4346118	P	3.3483787	P	1.06159471972098	0	lncRNA	21496-1_{1..472}	lnc-TGFBRAP1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TGFBRAP1-4:1	chr2	105654912	105655383	-	lnc-TGFBRAP1-4	lnc-TGFBRAP1-4:1	ENSG00000224509.1	AC010884.1	MRPS9	NA	chr2:105654483-105664954	inner
CUST_4068_PI429285431	0.911291	A	0.93018156	A	0.986991414267909	0	lncRNA	4030-1_{1..3000}	"transcript_id ""ENST00000561746.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561746.1"" | genecode_v17"	chr11	107182858	107185857	-	ENSG00000261098.1	ENST00000561746.1	RP11-819C21.1	RP11-819C21.1-001	NA	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-22.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10"	NA	inter
CUST_43731_PI429285431	0.90697813	A	0.92708945	A	0.986156608585354	0	lncRNA	48475-1_{1..2907}	"gi|380254461|ref|NR_046437.1| Homo sapiens solute carrier family 30, member 10 (SLC30A10), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|380254461|ref|NR_046437.1| Homo sapiens solute carrier family 30, member 10 (SLC30A10), transcript variant 2, non-coding RNA"	Chr1	220087606	220090512	-	55532	NR_046437.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002087	2.3365479	A	2.2621121	A	1.05294917476031	0	lncRNA	ENST00000455614	NA	NA	NA	NA	XLOC_002250	NA	ENST00000455614	NA	NA	"BROAD Institute lincRNA (XLOC_002250), lincRNA [TCONS_00003361]"	chr2:107883968-107883154	hs|2q12.3	Agilent_HUMAN_G3V2	ENST00000455614	ENST00000455614	chr2	107883154	107883968	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00317910	3.117095	P	2.242957	A	1.83291260695802	0	lncRNA	ENST00000427109	NA	NA	NA	NA	XLOC_l2_015034	NA	ENST00000427109	THC2641735	NA	"BROAD Institute lincRNA (XLOC_l2_015034), lincRNA [TCONS_l2_00029055]"	chr9:132094633-132094692	hs|9q34.11	Agilent_HUMAN_G3V2	ENST00000427109	ENST00000427109	chr9	132094633	132094692	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3263503	2.5520146	A	2.2939243	A	1.19589464690317	0	lncRNA	ENST00000552653	XR_132908	XR_132908	NA	Hs.729074	NA	NA	ENST00000552653	THC2487727	NA	"PREDICTED: Homo sapiens HLA complex group 8 (HCG8), miscRNA [XR_132908]"	chr6:29979477-29979418	hs|6p22.1	Agilent_HUMAN_G3V2	ENST00000552653	ENST00000552653	chr6	 29979418	 29979477	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50476_PI429285431	0.8977458	A	1.5642248	A	0.630042475933657	0	lncRNA	54176-2_{3001..3140}	hg19_lincRNAsTranscripts_TCONS_l2_00030276 range=chrX:100699054-100787518 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030276 range=chrX:100699054-100787518 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	100702054	100702193	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_50530_PI429285431	3.308667	P	3.273554	P	1.02463707523574	0	lncRNA	54225-1_{1..2050}	hg19_lincRNAsTranscripts_TCONS_l2_00030388 range=chrX:149109278-149129133 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030388 range=chrX:149109278-149129133 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	149109278	149111327	+	NA	NA	NA	NA	CXorf40B	NA	chrX:149100415-149106716	inter
CUST_21239_PI429285431	7.7250676	P	7.628635	P	1.06912652658891	0	lncRNA	22865-1_{1..379}	lnc-ROPN1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ROPN1B-1:1	chr3	125776761	125777139	+	lnc-ROPN1B-1	lnc-ROPN1B-1:1	ENSG00000248607.1	RP11-158I23.1	SLC41A3	NA	chr3:125766761-125787071	inner
LNCA_21_P0008778	0.8848735	A	1.9012151	A	0.494368388240549	0	lncRNA	TCONS_00023779	NA	NA	NA	NA	XLOC_011573	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011573), lincRNA [TCONS_00023779]"	chr15:90066824-90064942	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00023779	TCONS_00023779	chr15	 90064942	 90066824	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25_PI429201921	4.723721	P	4.759975	P	0.975183756161653	0	lncRNA	26-1_{1..997}	TC21000565.hg.1	TCONS_l2_00016963-XLOC_l2_008972 // Broad TUCP // linc-POTED-7 chr21:+:10899126-10900124 // chr21 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr21:+:10899126-10900124	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00016963-XLOC_l2_008972	linc-POTED-7	chr21	 10899126	 10900124	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49085_PI429285431	0.8915644	A	2.2601542	A	0.387269610244817	0	lncRNA	52909-1_{1..362}	hg19_lincRNAsTranscripts_TCONS_l2_00021056 range=chr4:9152734-9154731 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021056 range=chr4:9152734-9154731 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  9152734	  9153095	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35363_PI429285431	0.8933747	A	0.8962553	A	0.998005312270686	0	lncRNA	36772-1_{1..3000}	n342405|BC036321|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4897|NULL|-1.1798400|-0.3451269	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342405|BC036321|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4897|NULL|-1.1798400|-0.3451269	chr13	 52703026	 52706025	+	NA	NA	NA	NA	NEK5	NA	chr13:52693026-52703214	inner
LNCA_21_P0008203	5.4613366	P	5.4346256	P	1.01868711324744	0	lncRNA	TCONS_00022089	NA	NA	NA	NA	XLOC_010699	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010699), lincRNA [TCONS_00022089]"	chr13:96737219-96737160	hs|13q32.1	Agilent_HUMAN_G3V2	TCONS_00022089	TCONS_00022089	chr13	 96737160	 96737219	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10271_PI429285431	6.376158	P	6.5916953	P	0.86122535555791	0	lncRNA	11796-1_{1..1431}	lnc-ALK-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALK-2:1	chr2	 30523143	 30524573	-	lnc-ALK-2	lnc-ALK-2:1	XLOC_002040	linc-ALK-1	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20"	NA	inter
LNCA_21_P0008255	0.8792282	A	0.8843352	A	0.996466355417774	0	lncRNA	TCONS_00022278	NA	NA	NA	NA	XLOC_010602	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010602), lincRNA [TCONS_00022278]"	chr13:48510653-48510594	hs|13q14.2	Agilent_HUMAN_G3V2	TCONS_00022278	TCONS_00022278	chr13	 48510594	 48510653	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005358	1.4701102	A	0.8814628	A	1.50383616335428	0	lncRNA	TCONS_00013372	NA	NA	NA	NA	XLOC_006008	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006008), lincRNA [TCONS_00013372]"	chr7:22452099-22452158	hs|7p15.3	Agilent_HUMAN_G3V2	TCONS_00013372	TCONS_00013372	chr7	 22452099	 22452158	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39433_PI429285431	1.4327753	A	0.91581035	A	1.43094175514444	0	lncRNA	40382-1_{1..1348}	n386730|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tgn.1||0.4287940|-0.2183075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386730|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tgn.1||0.4287940|-0.2183075	chr13	 50656413	 50657760	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48073_PI429285431	2.2925131	A	2.796781	A	0.70501805037285	0	lncRNA	51949-1_{1..1717}	"gi|397138268|ref|XR_159429.1| PREDICTED: Homo sapiens uncharacterized LOC100129516 (LOC100129516), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138268|ref|XR_159429.1| PREDICTED: Homo sapiens uncharacterized LOC100129516 (LOC100129516), misc_RNA"	NA	NA	NA	NA	NA	XR_159429.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40"	NA	Unknown
CUST_28963_PI429285431	0.90723825	A	0.91438454	A	0.995058817241645	0	lncRNA	30684-1_{1..494}	n326394|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000101759|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000101759|-1.3313500|-0.2831895	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326394|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000101759|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000101759|-1.3313500|-0.2831895	chr1	145960713	145961206	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005081	0.87791544	A	0.8803412	A	0.998320004070972	0	lncRNA	TCONS_00012353	NA	NA	NA	NA	XLOC_005910	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005910), lincRNA [TCONS_00012353]"	chr6:163810515-163810456	hs|6q26	Agilent_HUMAN_G3V2	TCONS_00012353	TCONS_00012353	chr6	163810456	163810515	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1446_PI429285431	0.87913984	A	0.88419086	A	0.996505021433287	0	lncRNA	1435-1_{1..464}	"transcript_id ""ENST00000498630.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000498630.1"" | genecode_v17"	chr3	114591961	114592424	+	ENSG00000239946.1	ENST00000498630.1	ZBTB20-AS3	ZBTB20-AS3-001	ZBTB20	NA	chr3:114581961-114605361	inner
LNCA_21_P0004206	4.619529	P	4.83173	P	0.863219284255511	0	lncRNA	THC2681894	NA	NA	NA	NA	XLOC_004257	NA	NA	THC2681894	NA	"BROAD Institute lincRNA (XLOC_004257), lincRNA [TCONS_00009844]"	chr5:002965474-002965533	hs|5p15.33	Agilent_HUMAN_G3V2	THC2681894	THC2681894	chr5	  2965474	  2965533	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2024_PI429285431	4.2320123	P	4.3897696	P	0.896417488349795	0	lncRNA	2015-1_{1..412}	"transcript_id ""ENST00000514966.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514966.1"" | genecode_v17"	chr4	190114254	190114665	+	ENSG00000251310.1	ENST00000514966.1	RP11-706F1.1	RP11-706F1.1-001	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50"	NA	inter
CUST_6009_PI429285431	4.025824	P	4.546359	P	0.697113272113566	0	lncRNA	5934-1_{1..461}	"transcript_id ""ENST00000577000.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577000.1"" | genecode_v17"	chr17	 79279126	 79279586	-	ENSG00000185168.5	ENST00000577000.1	LINC00482	LINC00482-002	TMEM105	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10chr17:79285070-79291527"	NA	inter
CUST_49130_PI429285431	5.955103	P	6.174822	P	0.858732679255989	0	lncRNA	52957-1_{1..541}	hg19_lincRNAsTranscripts_TCONS_l2_00020628 range=chr4:86167563-86168180 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020628 range=chr4:86167563-86168180 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 86167563	 86168103	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44227_PI429285431	1.3316782	A	0.9162169	A	1.33372506590078	0	lncRNA	48876-1_{1..741}	"gi|410170467|ref|XR_171034.1| PREDICTED: Homo sapiens uncharacterized LOC644662 (LOC644662), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170467|ref|XR_171034.1| PREDICTED: Homo sapiens uncharacterized LOC644662 (LOC644662), misc_RNA"	Chr3	126006603	126007343	+	644662	XR_171034.2	NA	NA	NA	NA	NA	inter
CUST_33603_PI429285431	1.1179888	A	1.5793841	A	0.726283495057373	0	lncRNA	35168-1_{1..368}	n340360|AF056426|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2821|NULL|-1.0362000|-0.2204306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340360|AF056426|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2821|NULL|-1.0362000|-0.2204306	chr5	  9508393	  9508760	-	NA	NA	NA	NA	SEMA5A	NA	chr5:9498393-9518761	inner
CUST_8289_PI429285431	3.8917217	P	4.0239396	P	0.912427668007307	0	lncRNA	9874-1_{1..427}	lnc-CYB5R2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYB5R2-3:1	chr11	  7486984	  7487410	-	lnc-CYB5R2-3	lnc-CYB5R2-3:1	ENSG00000251364	ENSG00000251364.2	SYT9	NA	chr11:7476984-7490276	inner
CUST_40110_PI429285431	10.208803	P	9.656881	P	1.46603749302562	0	lncRNA	40955-1_{1..1758}	n407553|NR_027011|lncRNA|Homosapiens||RefGeneNoncode|NR_027011||3.9565000|-0.1936156	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407553|NR_027011|lncRNA|Homosapiens||RefGeneNoncode|NR_027011||3.9565000|-0.1936156	chr16	 31579087	 31580844	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30842_PI429285431	4.260565	P	4.044164	P	1.161831620495	0	lncRNA	32630-1_{1..305}	n336811|AB231744|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000329984|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000329984|1.1224700|-0.0818725	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336811|AB231744|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000329984|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000329984|1.1224700|-0.0818725	chr11	 15222409	 15222713	+	NA	NA	NA	NA	INSC	NA	chr11:15212409-15257244	inner
CUST_7793_PI429285431	3.8811727	P	3.803765	P	1.05512044787019	0	lncRNA	9418-1_{1..1068}	lnc-WDR5-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR5-3:2	chr9	136893948	136895015	+	lnc-WDR5-3	lnc-WDR5-3:2	ENSG00000235106	NCRNA00094	BRD3	NA	chr9:136895427-136904376	inter
CUST_30345_PI429285431	2.0570319	A	1.7774104	A	1.21387637461293	0	lncRNA	32121-1_{1..453}	n335297|AY670821|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000256104|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000256104|-0.8570910|-0.1009254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335297|AY670821|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000256104|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000256104|-0.8570910|-0.1009254	chr14	106322020	106322472	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36007_PI429285431	8.3034725	P	8.328463	P	0.982827070340165	0	lncRNA	37341-2_{3001..5779}	n344618|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_166|NULL|-1.3732500|-0.2138910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344618|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_166|NULL|-1.3732500|-0.2138910	chr19	 52195593	 52198371	+	NA	NA	NA	NA	HAS1	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30chr19:52216365-52225296"	NA	inter
CUST_40441_PI429285431	10.661036	P	10.741302	P	0.945883231392525	0	lncRNA	41219-1_{1..846}	n409337|NR_033697|lncRNA|Homosapiens||RefGeneNoncode|NR_033697||1.9393400|-0.2295349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409337|NR_033697|lncRNA|Homosapiens||RefGeneNoncode|NR_033697||1.9393400|-0.2295349	chr5	140024947	140025792	-	NA	NA	NA	NA	IK	NA	chr5:140027384-140037370	inner
CUST_8610_PI429285431	6.755169	P	6.335616	P	1.33751307982078	0	lncRNA	10164-1_{1..760}	lnc-PLAC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLAC1-1:1	chrX	133680582	133681341	-	lnc-PLAC1-1	lnc-PLAC1-1:1	ENSG00000223749	AC004383.4	NA	NA	NA	inter
CUST_6071_PI429285431	0.89591885	A	0.90391654	A	0.994471760990276	0	lncRNA	5995-1_{1..567}	"transcript_id ""ENST00000582033.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582033.1"" | genecode_v17"	chr18	  6493419	  6493985	+	ENSG00000266065.1	ENST00000582033.1	CTD-2124B20.2	CTD-2124B20.2-001	LOC100130480	NA	chr18:6483419-6505667	inter
CUST_23985_PI429285431	0.8794303	A	0.8844365	A	0.996535980192815	0	lncRNA	25540-1_{1..1163}	lnc-HBE1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-HBE1-1:3	chr11	  5526799	  5527961	-	lnc-HBE1-1	lnc-HBE1-1:3	ENSG00000167355.3	AC104389.28	UBQLNL	NA	chr11:5535623-5536882	inner
CUST_26807_PI429285431	2.398662	A	3.4109933	P	0.495744509695649	0	lncRNA	28319-1_{1..450}	n323875|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060763|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060763|-0.2589900|-0.2061442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323875|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060763|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060763|-0.2589900|-0.2061442	chrX	 48323105	 48323554	-	NA	NA	NA	NA	SLC38A5	NA	chrX:48316927-48328644	inner
LNCA_33_P3272442	0.8758805	A	1.9325955	A	0.480725420653828	0	lncRNA	XR_108694	XR_108694	XR_108694	100129195	Hs.659413	LOC100129195	uncharacterized LOC100129195	NA	THC2476948	NA	"PREDICTED: Homo sapiens hypothetical LOC100129195 (LOC100129195), miscRNA [XR_108694]"	chr6:28089803-28089744	hs|6p22.1	Agilent_HUMAN_G3V2	XR_108694	XR_108694	chr6	 28089744	 28089803	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5090_PI429285431	0.8763451	A	1.2007384	A	0.798634167286977	0	lncRNA	5030-1_{1..906}	"transcript_id ""ENST00000557528.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557528.1"" | genecode_v17"	chr15	 20557614	 20558519	+	ENSG00000258654.1	ENST00000557528.1	RP11-509A17.3	RP11-509A17.3-001	NA	NA	NA	inter
CUST_41623_PI429285431	0.89556766	A	0.91612136	A	0.985854265353121	0	lncRNA	42998-1_{1..77}	ENST00000581367 ncrna:miRNA chromosome:GRCh37:5:54804678:54804754:-1 gene:ENSG00000265135 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581367 ncrna:miRNA chromosome:GRCh37:5:54804678:54804754:-1 gene:ENSG00000265135 gene_biotype:miRNA transcript_biotype:miRNA	chr5	 54804678	 54804754	-	ENSG00000265135	ENST00000581367	NA	NA	PPAP2A	NA	chr5:54794678-54814754	inner
CUST_8441_PI429285431	5.87254	P	5.931589	P	0.959896658351793	0	lncRNA	10011-1_{1..1616}	lnc-IGFL3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IGFL3-3:1	chr19	 46717054	 46718669	-	lnc-IGFL3-3	lnc-IGFL3-3:1	ENSG00000236057	ENST00000537266	IGFL1	NA	chr19:46722592-46728095	inter
CUST_45556_PI429285431	4.5013156	P	4.7812033	P	0.823655128440353	0	lncRNA	49955-1_{1..2344}	"gi|389616140|ref|NR_051975.1| Homo sapiens cAMP responsive element modulator (CREM), transcript variant 32, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|389616140|ref|NR_051975.1| Homo sapiens cAMP responsive element modulator (CREM), transcript variant 32, non-coding RNA"	Chr10	 35415769	 35418112	+	1390	NR_051975.1	NA	NA	NA	NA	NA	inter
CUST_25686_PI429285431	4.382807	P	4.813981	P	0.741658011926369	0	lncRNA	27215-1_{1..461}	lnc-GTPBP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTPBP1-1:1	chr22	 39134627	 39135087	+	lnc-GTPBP1-1	lnc-GTPBP1-1:1	ENSG00000244491.1	RP3-508I15.18	GTPBP1	"hg19_refFlat_SUN2:range=chr22:39132272-391486335'pad=0,hg19_refFlat_SUN2:range=chr22:39132272-391486335'pad=0 3'pad=0 strand=- repeatMasking=none,-101.30chr22:39124627-39129592"	NA	inner
CUST_7878_PI429285431	3.8620677	P	3.2680964	P	1.50939594131926	0	lncRNA	9498-2_{3001..3674}	lnc-ZNF8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF8-2:1	chr19	 58814107	 58814780	+	lnc-ZNF8-2	lnc-ZNF8-2:1	ENSG00000244936	ENST00000501378	ZNF8	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90chr19:58801107-58807254"	NA	inter
CUST_34520_PI429285431	0.89350295	A	2.5006518	A	0.328246412799077	0	lncRNA	35984-1_{1..820}	n341399|AF339786|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3868|NULL|-1.2202500|-0.3298698	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341399|AF339786|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3868|NULL|-1.2202500|-0.3298698	chr13	 99913650	 99914469	+	NA	NA	NA	NA	UBAC2	NA	chr13:99903650-99924453	inter
CUST_39858_PI429285431	0.90267843	A	0.91221434	A	0.993412007475505	0	lncRNA	40757-1_{1..2017}	n406508|NR_024014|lncRNA|Homosapiens||RefGeneNoncode|NR_024014||2.3377900|-0.2063593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406508|NR_024014|lncRNA|Homosapiens||RefGeneNoncode|NR_024014||2.3377900|-0.2063593	chr2	241388835	241390851	-	NA	NA	NA	NA	GPC1	NA	chr2:241378835-241406117	inner
CUST_9048_PI429285431	1.5565618	A	1.7245772	A	0.890066232219537	0	lncRNA	10573-1_{1..3000}	lnc-SYK-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SYK-3:1	chr9	 93572886	 93575885	+	lnc-SYK-3	lnc-SYK-3:1	ENSG00000249765	ENST00000515738	SYK	"hg19_refFlat_DIRAS2:range=chr9:93375510-933761095'pad=0,hg19_refFlat_DIRAS2:range=chr9:93375510-933761095'pad=0 3'pad=0 strand=- repeatMasking=none,-102.00chr9:93564012-93582918"	NA	inner
CUST_29731_PI429285431	13.766713	P	14.066553	P	0.812342483024958	0	lncRNA	31493-1_{1..206}	n333404|BC009473|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087289|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087289|-1.1035900|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333404|BC009473|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087289|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087289|-1.1035900|-1.0000000	chr19	  6424599	  6424804	-	NA	NA	NA	NA	KHSRP	NA	chr19:6414599-6424822	inner
CUST_43629_PI429285431	9.128852	P	8.9885645	P	1.10212472520473	0	lncRNA	48388-1_{1..2531}	"gi|374717334|ref|NR_046293.1| Homo sapiens misato homolog 1 (Drosophila) (MSTO1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374717334|ref|NR_046293.1| Homo sapiens misato homolog 1 (Drosophila) (MSTO1), transcript variant 5, non-coding RNA"	Chr1	155579961	155582491	+	55154	NR_046293.1	NA	NA	NA	"hg19_refFlat_GON4L:range=chr1:155720375-1558235715'pad=0,hg19_refFlat_GON4L:range=chr1:155720375-1558235715'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20"	NA	inter
CUST_47786_PI429285431	0.8880295	A	0.9010551	A	0.991011978028802	0	lncRNA	51708-2_{3001..5396}	"gi|376319254|ref|NR_046355.1| Homo sapiens neuroligin 4, Y-linked (NLGN4Y), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|376319254|ref|NR_046355.1| Homo sapiens neuroligin 4, Y-linked (NLGN4Y), transcript variant 5, non-coding RNA"	ChrY	 16638385	 16640780	+	22829	NR_046355.1	NA	NA	NA	NA	NA	inter
CUST_2926_PI429285431	0.925236	A	0.9986335	A	0.95039720600736	0	lncRNA	2907-1_{1..957}	"transcript_id ""ENST00000448311.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000448311.1"" | genecode_v17"	chr7	127116937	127117893	+	ENSG00000226770.1	ENST00000448311.1	AC000124.1	AC000124.1-001	NA	NA	NA	inter
CUST_25998_PI429285431	1.4891852	A	1.3698267	A	1.08625174903054	0	lncRNA	27517-1_{1..543}	lnc-AVEN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AVEN-2:1	chr15	 34148514	 34149056	-	lnc-AVEN-2	lnc-AVEN-2:1	ENSG00000259408.1	RP11-3D4.3	AVEN	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80chr15:34158428-34159010"	NA	inner
CUST_49270_PI429285431	2.4441924	A	3.2582648	P	0.568774069944085	0	lncRNA	53090-1_{1..2645}	hg19_lincRNAsTranscripts_TCONS_l2_00022638 range=chr5:173763174-173957287 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022638 range=chr5:173763174-173957287 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	173763174	173765818	+	NA	NA	NA	NA	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80"	NA	inter
CUST_13880_PI429285431	3.8566709	P	2.8104246	P	2.06514960765499	0	lncRNA	15525-2_{3001..6000}	lnc-CRYBA4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CRYBA4-1:2	chr22	 27067121	 27070120	+	lnc-CRYBA4-1	lnc-CRYBA4-1:2	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
LNCA_21_P0008529	0.89823717	A	0.9144137	A	0.988849912045119	0	lncRNA	TCONS_00023084	NA	NA	NA	NA	XLOC_010978	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010978), lincRNA [TCONS_00023084]"	chr14:25591162-25591103	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00023084	TCONS_00023084	chr14	 25591103	 25591162	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_265_PI429201921	3.6059067	P	3.799462	P	0.874448120992168	0	lncRNA	193-3_{6001..6575}	TC19002515.hg.1	TCONS_l2_00013151-XLOC_l2_007074 // Broad TUCP // linc-EXOC3L2 chr19:-:45742029-45748605 // chr19 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr19:-:45742029-45748605	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00013151-XLOC_l2_007074	linc-EXOC3L2	chr19	 45742029	 45748605	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17127_PI429285431	0.89214873	A	1.4679648	A	0.670906641252975	0	lncRNA	18837-1_{1..1146}	lnc-CMPK2-13:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMPK2-13:13	chr2	  5745191	  5746336	-	lnc-CMPK2-13	lnc-CMPK2-13:13	XLOC_001958	linc-RNASEH1-2	NA	NA	NA	inter
LNCA_21_P0011241	3.9142597	P	4.6058397	P	0.619175374642507	0	lncRNA	TCONS_l2_00007711	NA	NA	NA	NA	XLOC_l2_004180	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004180), lincRNA [TCONS_l2_00007711]"	chr14:48697344-48697403	hs|14q21.3	Agilent_HUMAN_G3V2	TCONS_l2_00007711	TCONS_l2_00007711	chr14	 48697344	 48697403	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17034_PI429285431	4.183593	P	4.2389965	P	0.962325257628672	0	lncRNA	18746-1_{1..3000}	lnc-EIF2AK4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2AK4-1:3	chr15	 40214988	 40217987	+	lnc-EIF2AK4-1	lnc-EIF2AK4-1:3	XLOC_011218	linc-EIF2AK4	GPR176	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90chr15:40204988-40213093"	NA	inter
LNCA_23_P431569	5.2604027	P	5.5701885	P	0.806761531930334	0	lncRNA	ENST00000318291	XR_109114	XR_109114	NA	Hs.655804	NA	NA	ENST00000318291	THC2617882	NA	"PREDICTED: Homo sapiens hypothetical LOC100049716 (LOC100049716), miscRNA [XR_109114]"	chr12:754498-754557	hs|12p13.33	Agilent_HUMAN_G3V2	ENST00000318291	ENST00000318291	chr12	   754498	   754557	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35349_PI429285431	2.9643226	A	1.4187063	A	2.91928750267446	0	lncRNA	36760-1_{1..614}	n342393|AY166789|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4885|NULL|1.5593800|-0.2172542	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342393|AY166789|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4885|NULL|1.5593800|-0.2172542	chr19	 44585234	 44585847	+	NA	NA	NA	NA	ZNF284	NA	chr19:44576297-44591623	inner
CUST_17918_PI429285431	9.490729	P	9.826111	P	0.792574249252702	0	lncRNA	19650-1_{1..237}	lnc-KIAA0087-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA0087-1:1	chr7	 26590344	 26590580	-	lnc-KIAA0087-1	lnc-KIAA0087-1:1	XLOC_006388	linc-HNRNPA2B1-3	NA	NA	NA	inter
CUST_43546_PI429285431	0.87980974	A	0.8861339	A	0.995626020162117	0	lncRNA	48324-2_{3001..3192}	"gi|300795197|ref|NR_034072.1| Homo sapiens seryl-tRNA synthetase (SARS), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300795197|ref|NR_034072.1| Homo sapiens seryl-tRNA synthetase (SARS), transcript variant 2, non-coding RNA"	Chr1	109759515	109759706	+	6301	NR_034072.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.21;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30"	NA	inter
CUST_43182_PI429285431	9.600064	P	9.496424	P	1.07448102094404	0	lncRNA	47996-1_{1..94}	ENST00000586878 havana:sense_intronic chromosome:GRCh37:17:28444097:28444190:-1 gene:ENSG00000266919 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000586878 havana:sense_intronic chromosome:GRCh37:17:28444097:28444190:-1 gene:ENSG00000266919 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr17	 28444097	 28444190	-	ENSG00000266919	ENST00000586878	NA	NA	EFCAB5	NA	chr17:28434097-28435470	inner
CUST_569_PI429285431	6.347342	P	6.6547933	P	0.808068051580462	0	lncRNA	561-1_{1..390}	"transcript_id ""ENST00000446002.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446002.1"" | genecode_v17"	chr1	219086099	219086488	-	ENSG00000225561.1	ENST00000446002.1	RP11-412H9.2	RP11-412H9.2-001	NA	NA	NA	inter
LNCA_21_P0003858	6.191354	P	6.4686985	P	0.825108358019048	0	lncRNA	TCONS_00008929	NA	NA	NA	NA	XLOC_003772	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003772), lincRNA [TCONS_00008929]"	chr4:170861125-170861184	hs|4q33	Agilent_HUMAN_G3V2	TCONS_00008929	TCONS_00008929	chr4	170861125	170861184	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46252_PI429285431	1.0903869	A	0.9009991	A	1.14027974152039	0	lncRNA	50491-1_{1..394}	"gi|388490244|ref|NR_046520.1| Homo sapiens GPC5 antisense RNA 1 (GPC5-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|388490244|ref|NR_046520.1| Homo sapiens GPC5 antisense RNA 1 (GPC5-AS1), transcript variant 1, non-coding RNA"	Chr13	 93353642	 93354035	-	100873969	NR_046520.1	NA	NA	NA	NA	NA	inter
CUST_10176_PI429285431	1.2791587	A	2.0972986	A	0.567172740328606	0	lncRNA	11701-1_{1..459}	lnc-HIVEP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HIVEP1-3:1	chr6	 11920596	 11921054	+	lnc-HIVEP1-3	lnc-HIVEP1-3:1	XLOC_005172	linc-HIVEP1-3	NA	NA	NA	inter
CUST_28907_PI429285431	3.6825008	P	4.170164	P	0.713179332369909	0	lncRNA	30624-1_{1..658}	n326331|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000084267|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000084267|0.1603260|-0.3854157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326331|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000084267|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000084267|0.1603260|-0.3854157	chr1	171142662	171143319	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40"	NA	inter
LNCA_21_P0011008	6.8837843	P	6.8159547	P	1.04813867015797	0	lncRNA	BC068278	NA	BC068278	NA	Hs.144683	LOC441601	septin 7 pseudogene	NA	THC2629913	NA	"BROAD Institute lincRNA (XLOC_l2_002651), lincRNA [TCONS_l2_00005005]"	chr11:50238973-50238914	hs|11p11.12	Agilent_HUMAN_G3V2	BC068278	BC068278	chr11	 50238914	 50238973	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7333_PI429285431	1.7862363	A	0.8988616	A	1.84980692985806	0	lncRNA	8804-1_{1..305}	"transcript_id ""ENST00000365390.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000365390.1"" | genecode_v17"	chr20	 17556851	 17557155	-	ENSG00000202260.1	ENST00000365390.1	RN7SKP69	RN7SKP69-201	DSTN	NA	chr20:17546851-17567155	inner
CUST_44258_PI429285431	4.6713033	P	5.172051	P	0.706740406627578	0	lncRNA	48902-1_{1..955}	"gi|397139049|ref|XR_158775.1| PREDICTED: Homo sapiens uncharacterized LOC100507291 (LOC100507291), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|397139049|ref|XR_158775.1| PREDICTED: Homo sapiens uncharacterized LOC100507291 (LOC100507291), misc_RNA"	Chr3	139108631	139109585	+	100507291	XR_158775.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0009343	7.5196476	P	8.519714	P	0.499976988043172	0	lncRNA	XR_132630	XR_132630	XR_132630	NA	NA	LOC645722	uncharacterized LOC645722	NA	THC2583659	NA	"PREDICTED: Homo sapiens hypothetical LOC645722, transcript variant 2 (LOC645722), miscRNA [XR_132630]"	chr17:59470886-59470827	hs|17q23.2	Agilent_HUMAN_G3V2	XR_132630	XR_132630	chr17	 59470827	 59470886	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36702_PI429285431	0.8764349	A	0.8789847	A	0.998234174227137	0	lncRNA	37883-1_{1..650}	n345190|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_739|NULL|-1.3138600|-0.1201909	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345190|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_739|NULL|-1.3138600|-0.1201909	chr12	101127550	101128199	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11940_PI429285431	0.9961391	A	0.88067704	A	1.08332195154332	0	lncRNA	13520-1_{1..701}	lnc-MRPS18A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPS18A-1:1	chr6	 43705473	 43706173	-	lnc-MRPS18A-1	lnc-MRPS18A-1:1	XLOC_005729	linc-MRPS18A-1	NA	NA	NA	inter
CUST_47184_PI429285431	0.89201343	A	0.89645517	A	0.996925955023845	0	lncRNA	51261-1_{1..3000}	"gi|156104867|ref|NR_003699.1| Homo sapiens zinc finger protein 525 (ZNF525), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|156104867|ref|NR_003699.1| Homo sapiens zinc finger protein 525 (ZNF525), non-coding RNA"	Chr19	 53868968	 53871967	+	170958	NR_003699.1	NA	NA	NA	NA	NA	inter
CUST_42662_PI429285431	10.204507	P	10.11924	P	1.0608840613297	0	lncRNA	45567-1_{1..81}	ENST00000516632 ncrna:snoRNA chromosome:GRCh37:X:114779969:114780049:1 gene:ENSG00000252441 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516632 ncrna:snoRNA chromosome:GRCh37:X:114779969:114780049:1 gene:ENSG00000252441 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	114779969	114780049	+	ENSG00000252441	ENST00000516632	NA	NA	NA	NA	NA	inter
CUST_21503_PI429285431	2.2779648	A	1.8558031	A	1.33993377633411	0	lncRNA	23121-1_{1..516}	lnc-NFKBIL1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NFKBIL1-7:1	chr6	 31510482	 31510997	+	lnc-NFKBIL1-7	lnc-NFKBIL1-7:1	ENSG00000234006.1	DDX39B-AS1	DDX39B	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30chr6:31500482-31510252"	NA	inter
CUST_6483_PI429285431	8.705355	P	8.861443	P	0.897455306959498	0	lncRNA	6425-1_{1..2167}	"transcript_id ""ENST00000433059.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433059.1"" | genecode_v17"	chr19	 36279778	 36281944	-	ENSG00000225872.2	ENST00000433059.1	AC002398.5	AC002398.5-001	ARHGAP33	NA	chr19:36269778-36279724	inter
LNCA_21_P0009394	2.5753121	A	2.768322	A	0.874778762015944	0	lncRNA	TCONS_00025970	NA	NA	NA	NA	XLOC_012288	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012288), lincRNA [TCONS_00025970]"	chr17:66179595-66182891	hs|17q24.2	Agilent_HUMAN_G3V2	TCONS_00025970	TCONS_00025970	chr17	 66179595	 66182891	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22955_PI429285431	1.4787242	A	0.919147	A	1.47383722738313	0	lncRNA	24531-1_{1..534}	lnc-CHST1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHST1-4:1	chr11	 45773275	 45773808	-	lnc-CHST1-4	lnc-CHST1-4:1	ENSG00000255226.1	CTD-2210P24.3	NA	NA	NA	inter
CUST_18075_PI429285431	0.89919364	A	0.901134	A	0.998655948983444	0	lncRNA	19810-1_{1..503}	lnc-RP11-322L20.1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-322L20.1.1-4:1	chr14	 87646643	 87647145	+	lnc-RP11-322L20.1.1-4	lnc-RP11-322L20.1.1-4:1	XLOC_010896	linc-GPR65-1	NA	NA	NA	inter
LNCA_21_P0014761	2.8810186	A	3.0441163	P	0.893105368780941	0	lncRNA	ENST00000453348	XR_132527	XR_132527	NA	NA	LOC100505644	NA	ENST00000453348	THC2538035	NA	"PREDICTED: Homo sapiens hypothetical LOC100505644, transcript variant 2 (LOC100505644), miscRNA [XR_132527]"	chr7:1778491-1778432	hs|7p22.3	Agilent_HUMAN_G3V2	ENST00000453348	ENST00000453348	chr7	  1778432	  1778491	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3282683	3.1822865	P	3.5390432	P	0.780918177660229	0	lncRNA	XR_110587	XR_110587	XR_110587	100130027	Hs.639618	LOC100130027	uncharacterized LOC100130027	NA	THC2477299	NA	"PREDICTED: Homo sapiens hypothetical LOC100130027 (LOC100130027), miscRNA [XR_110587]"	chr8:146036104-146036045	hs|8q24.3	Agilent_HUMAN_G3V2	XR_110587	XR_110587	chr8	146036045	146036104	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38324_PI429285431	0.8816335	A	0.88533056	A	0.997440673958271	0	lncRNA	39370-1_{1..229}	n382037|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vea.1||-1.1427000|-0.4137876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n382037|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vea.1||-1.1427000|-0.4137876	chr13	 50623108	 50623336	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006353	0.8812772	A	0.88231486	A	0.999281007495692	0	lncRNA	TCONS_00016621	NA	NA	NA	NA	XLOC_007407	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007407), lincRNA [TCONS_00016621]"	chr9:76550967-76552847	hs|9q21.13	Agilent_HUMAN_G3V2	TCONS_00016621	TCONS_00016621	chr9	 76550967	 76552847	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12350_PI429285431	2.4434268	A	3.6967163	P	0.419490632554014	0	lncRNA	13962-1_{1..2591}	lnc-AKTIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AKTIP-1:1	chr16	 53075552	 53078142	-	lnc-AKTIP-1	lnc-AKTIP-1:1	XLOC_011944	linc-TOX3-2	CHD9	NA	chr16:53065552-53088119	inter
CUST_23238_PI429285431	2.3943794	A	1.6549201	A	1.66954999982331	0	lncRNA	24810-1_{1..632}	lnc-TSPAN11-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSPAN11-2:2	chr12	 30952847	 30953478	+	lnc-TSPAN11-2	lnc-TSPAN11-2:2	ENSG00000235884.2	RP11-77I22.3	NA	NA	NA	inter
CUST_33115_PI429285431	4.146552	P	3.9192533	P	1.17064098948143	0	lncRNA	34714-1_{1..1698}	n339803|AK097793|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2250|NULL|-0.4430080|-0.1570740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339803|AK097793|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2250|NULL|-0.4430080|-0.1570740	chr18	 13471010	 13472707	-	NA	NA	NA	NA	C18orf1	NA	chr18:13461010-13482708	inner
CUST_7199_PI429285431	1.5685158	A	1.5021969	A	1.04704169934803	0	lncRNA	7550-1_{1..295}	"transcript_id ""ENST00000363891.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000363891.1"" | genecode_v17"	chr4	  4922497	  4922791	-	ENSG00000200761.1	ENST00000363891.1	RN7SKP113	RN7SKP113-201	NA	NA	NA	inter
CUST_40019_PI429285431	3.7791712	P	3.6394439	P	1.10169685209326	0	lncRNA	40879-1_{1..1960}	n407173|NR_026592|lncRNA|Homosapiens||RefGeneNoncode|NR_026592||3.7409400|-0.1970823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n407173|NR_026592|lncRNA|Homosapiens||RefGeneNoncode|NR_026592||3.7409400|-0.1970823	chr10	 75458908	 75460867	-	NA	NA	NA	NA	AGAP5	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00chr10:75448908-75457554"	NA	inter
LNCA_21_P0010126	7.597308	P	7.5576715	P	1.02785481675559	0	lncRNA	THC2705664	NA	NA	NA	NA	XLOC_013826	NA	NA	THC2705664	NA	"BROAD Institute lincRNA (XLOC_013826), lincRNA [TCONS_00028717]"	chr20:058908997-058908938	hs|20q13.33	Agilent_HUMAN_G3V2	THC2705664	THC2705664	chr20	 58908938	 58908997	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3290303	0.8811667	A	0.8842814	A	0.997843383323344	0	lncRNA	XR_110306	XR_110306	XR_110306	100128278	Hs.689419	LOC100128278	uncharacterized LOC100128278	NA	THC2490591	NA	"PREDICTED: Homo sapiens hypothetical LOC100128278 (LOC100128278), miscRNA [XR_110306]"	chr13:113392026-113392085	hs|13q34	Agilent_HUMAN_G3V2	XR_110306	XR_110306	chr13	113392026	113392085	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34564_PI429285431	5.42454	P	5.8386855	P	0.750463858472899	0	lncRNA	36024-1_{1..2847}	n341445|CR627049|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3915|NULL|-0.2998130|-0.2342514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341445|CR627049|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3915|NULL|-0.2998130|-0.2342514	chr13	112851663	112854509	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9280_PI429285431	0.88384557	A	0.8855583	A	0.998813530441677	0	lncRNA	10785-1_{1..286}	lnc-SPTB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPTB-1:1	chr14	 65170749	 65171034	-	lnc-SPTB-1	lnc-SPTB-1:1	XLOC_011052	linc-ZBTB25	PLEKHG3	NA	chr14:65171193-65180923	inter
CUST_35533_PI429285431	3.6402419	P	3.983715	P	0.788141678004657	0	lncRNA	36951-1_{1..1182}	n342657|BC009549|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5159|NULL|-1.0177800|-0.2485589	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342657|BC009549|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5159|NULL|-1.0177800|-0.2485589	chr17	  5377609	  5378790	+	NA	NA	NA	NA	MIS12	"hg19_refFlat_DERL2:range=chr17:5378004-53894815'pad=0,hg19_refFlat_DERL2:range=chr17:5378004-53894815'pad=0 3'pad=0 strand=- repeatMasking=none,-100.50chr17:5390247-5394131"	NA	inner
CUST_2406_PI429285431	3.6161265	P	3.4260871	P	1.14079487054968	0	lncRNA	2398-1_{1..771}	"transcript_id ""ENST00000523178.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523178.1"" | genecode_v17"	chr5	157652360	157653130	-	ENSG00000253449.1	ENST00000523178.1	CTC-436K13.6	CTC-436K13.6-001	NA	NA	NA	inter
CUST_39266_PI429285431	13.29045	P	13.457696	P	0.890541037761326	0	lncRNA	40237-1_{1..1080}	n386178|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010crb.1||4.3405200|-0.0692280	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386178|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010crb.1||4.3405200|-0.0692280	chr17	 20744340	 20745419	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34619_PI429285431	0.9004085	A	0.91193163	A	0.99204458805556	0	lncRNA	36074-1_{1..3000}	n341510|AB037837|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3980|NULL|20.8117000|-0.1063368	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341510|AB037837|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3980|NULL|20.8117000|-0.1063368	chr8	 61712994	 61715993	+	NA	NA	NA	NA	CHD7	NA	chr8:61702994-61780587	inner
CUST_42084_PI429285431	3.6264768	P	4.017311	P	0.762688472651166	0	lncRNA	44016-1_{1..68}	ENST00000581187 ncrna:miRNA chromosome:GRCh37:1:23189652:23189719:-1 gene:ENSG00000264014 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581187 ncrna:miRNA chromosome:GRCh37:1:23189652:23189719:-1 gene:ENSG00000264014 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 23189652	 23189719	-	ENSG00000264014	ENST00000581187	NA	NA	EPHB2	NA	chr1:23179652-23199719	inner
CUST_486_PI429285431	1.3048413	A	2.2365599	A	0.524233480374674	0	lncRNA	477-1_{1..448}	"transcript_id ""ENST00000430592.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430592.1"" | genecode_v17"	chr1	174090776	174091223	-	ENSG00000227373.1	ENST00000430592.1	RP11-160H22.5	RP11-160H22.5-001	RABGAP1L	NA	chr1:174128634-174138425	inter
CUST_14071_PI429285431	0.91810256	A	0.95663	A	0.973648243950159	0	lncRNA	15717-1_{1..620}	lnc-RAP2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAP2A-1:1	chr13	 98202197	 98202816	+	lnc-RAP2A-1	lnc-RAP2A-1:1	XLOC_010476	linc-IPO5	NA	NA	NA	inter
CUST_14358_PI429285431	0.9799141	A	0.903008	A	1.05475366458816	0	lncRNA	16016-1_{1..502}	lnc-CLEC2D-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLEC2D-5:1	chr12	  9504271	  9504772	+	lnc-CLEC2D-5	lnc-CLEC2D-5:1	XLOC_009651	linc-CLEC2D-4	NA	NA	NA	inter
CUST_42539_PI429285431	1.0596496	A	1.2980558	A	0.847681260959202	0	lncRNA	45341-1_{1..128}	ENST00000458908 ncrna:snoRNA chromosome:GRCh37:X:117872018:117872145:1 gene:ENSG00000239182 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000458908 ncrna:snoRNA chromosome:GRCh37:X:117872018:117872145:1 gene:ENSG00000239182 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	117872018	117872145	+	ENSG00000239182	ENST00000458908	NA	NA	IL13RA1	NA	chrX:117862018-117882145	inner
CUST_34926_PI429285431	1.3426614	A	2.469704	A	0.457853323484522	0	lncRNA	36346-1_{1..2586}	n341843|AK097740|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4323|NULL|-1.0468200|-0.3023231	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341843|AK097740|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4323|NULL|-1.0468200|-0.3023231	chr6	 40348021	 40350606	+	NA	NA	NA	NA	LRFN2	NA	chr6:40359373-40360605	inter
CUST_12890_PI429285431	0.90097874	A	1.3338621	A	0.740779787662461	0	lncRNA	14518-1_{1..284}	lnc-LYRM7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYRM7-2:1	chr5	130363931	130364214	+	lnc-LYRM7-2	lnc-LYRM7-2:1	XLOC_004546	linc-LYRM7-2	NA	NA	NA	inter
LNCA_21_P0006777	0.90362346	A	0.92330754	A	0.986448692448807	0	lncRNA	ENST00000428166	NA	NA	NA	NA	XLOC_008896	NA	ENST00000428166	NA	NA	"BROAD Institute lincRNA (XLOC_008896), lincRNA [TCONS_00018019]"	chr10:91406110-91406051	hs|10q23.31	Agilent_HUMAN_G3V2	ENST00000428166	ENST00000428166	chr10	 91406051	 91406110	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10433_PI429285431	0.8885585	A	0.89295393	A	0.996957956507637	0	lncRNA	11961-1_{1..1395}	lnc-KLF7-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF7-1:4	chr2	208118913	208120307	-	lnc-KLF7-1	lnc-KLF7-1:4	XLOC_002473	linc-KLF7-2	NA	NA	NA	inter
LNCA_21_P0003365	0.90127623	A	0.9192795	A	0.987598622960408	0	lncRNA	ENST00000514413	NA	NA	NA	NA	XLOC_003541	NA	ENST00000514413	THC2678213	NA	"BROAD Institute lincRNA (XLOC_003541), lincRNA [TCONS_00007532]"	chr4:55725348-55725407	hs|4q12	Agilent_HUMAN_G3V2	ENST00000514413	ENST00000514413	chr4	 55725348	 55725407	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1279_PI429285431	1.4727879	A	0.9487084	A	1.43801577281166	0	lncRNA	1270-1_{1..565}	"transcript_id ""ENST00000412193.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000412193.1"" | genecode_v17"	chr2	242967334	242967898	-	ENSG00000226423.1	ENST00000412193.1	AC093642.4	AC093642.4-001	NA	NA	NA	inter
CUST_14395_PI429285431	3.4237058	P	4.0929527	P	0.628834859144181	0	lncRNA	16057-1_{1..345}	lnc-OTUD7B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OTUD7B-1:1	chr1	149998786	149999130	-	lnc-OTUD7B-1	lnc-OTUD7B-1:1	XLOC_001013	linc-OTUD7B-1	NA	NA	NA	inter
CUST_591_PI429285431	6.679096	P	6.3019805	P	1.29874257394946	0	lncRNA	583-1_{1..549}	"transcript_id ""ENST00000434872.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000434872.1"" | genecode_v17"	chr1	223004322	223004870	+	ENSG00000228106.1	ENST00000434872.1	RP11-452F19.3	RP11-452F19.3-011	DISP1	NA	chr1:222994322-223020726	inner
CUST_10708_PI429285431	0.9110231	A	0.9284344	A	0.988003939884489	0	lncRNA	12244-1_{1..432}	lnc-IL1R2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL1R2-1:1	chr2	102605340	102605771	+	lnc-IL1R2-1	lnc-IL1R2-1:1	XLOC_001595	linc-IL1R2-1	IL1R2	NA	chr2:102608306-102615360	inter
CUST_11968_PI429285431	0.8868688	A	0.89913434	A	0.991534213837836	0	lncRNA	13546-1_{1..433}	lnc-TCF4-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF4-5:3	chr18	 53855509	 53855941	-	lnc-TCF4-5	lnc-TCF4-5:3	XLOC_012852	linc-TCF4-4	NA	NA	NA	inter
CUST_16_PI429201921	4.4619493	P	4.5663247	P	0.930207579265431	0	lncRNA	17-1_{1..863}	TC02004821.hg.1	 TCONS_l2_00015126-XLOC_l2_008450 // Broad TUCP // linc-OBSL1-2 chr2:-:220769044-220769635 // chr2 // 100 // 100 // 0 // --- // 0///TCONS_l2_00016094-XLOC_l2_008450 // Broad TUCP // linc-OBSL1-2 chr2:-:220768771-220769610 // chr2 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr2:-:220768771-220769610	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00016094-XLOC_l2_008450	linc-OBSL1-2	chr2	220768771	220769610	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16116_PI429285431	0.8910812	A	0.9059539	A	0.989743985231893	0	lncRNA	17822-1_{1..240}	lnc-CNR1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CNR1-1:2	chr6	 89008580	 89008819	-	lnc-CNR1-1	lnc-CNR1-1:2	XLOC_005780	linc-CNR1	NA	NA	NA	inter
CUST_44929_PI429285431	6.032796	P	6.4497023	P	0.74902911349342	0	lncRNA	49443-1_{1..3000}	"gi|224177506|ref|NR_026999.1| Homo sapiens long intergenic non-protein coding RNA 265 (LINC00265), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224177506|ref|NR_026999.1| Homo sapiens long intergenic non-protein coding RNA 265 (LINC00265), non-coding RNA"	Chr7	 39773167	 39776166	+	349114	NR_026999.1	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	inter
CUST_429_PI429285431	1.3178914	A	0.8935543	A	1.34195574951755	0	lncRNA	421-1_{1..727}	"transcript_id ""ENST00000425109.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425109.1"" | genecode_v17"	chr1	146473499	146474225	-	ENSG00000234225.1	ENST00000425109.1	RP4-704D21.2	RP4-704D21.2-001	KIAA1245	NA	chr1:146463499-146466121	inter
CUST_16089_PI429285431	0.881613	A	0.8892313	A	0.9947333147102	0	lncRNA	17792-1_{1..511}	lnc-TDO2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TDO2-2:1	chr4	156982764	156983274	+	lnc-TDO2-2	lnc-TDO2-2:1	XLOC_003754	linc-GLRB-4	NA	NA	NA	inter
CUST_49573_PI429285431	3.4208052	P	3.3034647	P	1.08473339373728	0	lncRNA	53363-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00024431 range=chr6:134785876-134828335 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024431 range=chr6:134785876-134828335 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	134785876	134788875	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70"	NA	inter
CUST_34393_PI429285431	0.89916384	A	0.9060498	A	0.995238388826618	0	lncRNA	35877-1_{1..2222}	n341263|BC039119|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3731|NULL|-1.0432300|-0.3595618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341263|BC039119|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3731|NULL|-1.0432300|-0.3595618	chr7	 80601831	 80604052	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7467_PI429285431	0.88281834	A	1.1129904	A	0.852533210118354	0	lncRNA	9110-1_{1..2299}	lnc-RNF149-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RNF149-2:1	chr2	101636560	101638858	-	lnc-RNF149-2	lnc-RNF149-2:1	ENSG00000246929	ENST00000499377	TBC1D8	"hg19_refFlat_RPL31:range=chr2:101619164-1016355005'pad=0,hg19_refFlat_RPL31:range=chr2:101619164-1016355005'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30chr2:101626560-101647620"	NA	inner
CUST_25311_PI429285431	5.0990524	P	4.877187	P	1.16624055725531	0	lncRNA	26841-1_{1..1489}	lnc-FAM83G-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM83G-1:1	chr17	 18856873	 18858361	-	lnc-FAM83G-1	lnc-FAM83G-1:1	ENSG00000196893.3	AC090286.4	SLC5A10	"hg19_refFlat_SLC5A10:range=chr17:18855519-189237445'pad=0,hg19_refFlat_SLC5A10:range=chr17:18855519-189237445'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.30chr17:18855478-18867462"	NA	inner
CUST_47135_PI429285431	10.328648	P	9.969568	P	1.28260772366453	0	lncRNA	51216-1_{1..1681}	"gi|396941678|ref|NR_073049.1| Homo sapiens death effector domain containing 2 (DEDD2), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|396941678|ref|NR_073049.1| Homo sapiens death effector domain containing 2 (DEDD2), transcript variant 7, non-coding RNA"	Chr19	 42702745	 42704425	-	162989	NR_073049.1	NA	NA	NA	NA	NA	inter
CUST_37575_PI429285431	8.022807	P	8.326309	P	0.810283124804033	0	lncRNA	38677-1_{1..1372}	n346051|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1601|NULL|-1.4147900|-0.3355319	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346051|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1601|NULL|-1.4147900|-0.3355319	chr1	228302156	228303527	-	NA	NA	NA	NA	GUK1	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00chr1:228302691-228319028"	NA	inter
CUST_25447_PI429285431	1.4267935	A	1.6304959	A	0.868319326560573	0	lncRNA	26977-1_{1..544}	lnc-HSFY2-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSFY2-3:3	chrY	 21238931	 21239474	-	lnc-HSFY2-3	lnc-HSFY2-3:3	ENSG00000176728.3	TTTY14	NA	NA	NA	inter
CUST_732_PI429285431	0.87764335	A	0.8821832	A	0.996858161708531	0	lncRNA	725-1_{1..537}	"transcript_id ""ENST00000444688.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444688.1"" | genecode_v17"	chr2	  8452939	  8453475	-	ENSG00000236790.1	ENST00000444688.1	LINC00299	LINC00299-004	NA	NA	NA	inter
CUST_24198_PI429285431	1.0244175	A	0.8928377	A	1.09549264630046	0	lncRNA	25749-1_{1..638}	lnc-GPN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPN3-1:1	chr12	110906662	110907299	-	lnc-GPN3-1	lnc-GPN3-1:1	ENSG00000257760.1	RP11-478C19.5	C12orf24	"hg19_refFlat_FAM216A:range=chr12:110906681-1109279425'pad=0,hg19_refFlat_FAM216A:range=chr12:110906681-1109279425'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.50chr12:110898765-110917073"	NA	inner
CUST_32280_PI429285431	3.9494066	P	4.2723675	P	0.799427496186655	0	lncRNA	33966-1_{1..441}	n338858|AF086019|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1282|NULL|-1.3189600|-0.2647336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338858|AF086019|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1282|NULL|-1.3189600|-0.2647336	chr2	 62993683	 62994123	+	NA	NA	NA	NA	EHBP1	NA	chr2:62983683-63004103	inner
CUST_41601_PI429285431	0.8816335	A	0.88292694	A	0.999103857486529	0	lncRNA	42953-1_{1..82}	ENST00000580727 ncrna:miRNA chromosome:GRCh37:6:138756350:138756431:-1 gene:ENSG00000266555 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580727 ncrna:miRNA chromosome:GRCh37:6:138756350:138756431:-1 gene:ENSG00000266555 gene_biotype:miRNA transcript_biotype:miRNA	chr6	138756350	138756431	-	ENSG00000266555	ENST00000580727	NA	NA	NHSL1	NA	chr6:138746350-138766431	inner
CUST_48778_PI429285431	2.256766	A	1.5847479	A	1.59330018193245	0	lncRNA	52616-1_{1..720}	hg19_lincRNAsTranscripts_TCONS_l2_00015573 range=chr2:201560457-201565095 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015573 range=chr2:201560457-201565095 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	201560457	201561176	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1117_PI429285431	0.90059996	A	3.6176589	A	0.152084081444854	0	lncRNA	1106-1_{1..721}	"transcript_id ""ENST00000596034.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596034.1"" | genecode_v17"	chr2	145780795	145781515	+	ENSG00000226674.3	ENST00000596034.1	AC074093.1	AC074093.1-020	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
LNCA_19_P00805108	1.4045978	A	2.2874115	A	0.542308730026746	0	lncRNA	ENST00000515871	NA	NA	NA	NA	XLOC_004905	NA	ENST00000515871	NA	NA	"BROAD Institute lincRNA (XLOC_004905), lincRNA [TCONS_00009713]"	chr5:79918287-79918228	hs|5q14.1	Agilent_HUMAN_G3V2	ENST00000515871	ENST00000515871	chr5	 79918228	 79918287	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32686_PI429285431	1.6695882	A	1.9724988	A	0.810615350020527	0	lncRNA	34334-2_{3001..3473}	n339315|BC012990|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1747|NULL|1.7321400|-0.1159444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339315|BC012990|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1747|NULL|1.7321400|-0.1159444	chr16	 85628871	 85629343	+	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00"	NA	inter
CUST_8732_PI429285431	0.9012006	A	0.91064745	A	0.993473334368394	0	lncRNA	10275-1_{1..2435}	lnc-TRIML1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIML1-3:4	chr4	189457889	189460323	+	lnc-TRIML1-3	lnc-TRIML1-3:4	ENSG00000249378	RP11-219G10.3	NA	NA	NA	inter
CUST_18912_PI429285431	2.7757623	A	3.8587706	P	0.472043493843693	0	lncRNA	20603-1_{1..2421}	lnc-AC110781.3.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC110781.3.1-1:2	chr7	  1785880	  1788300	+	lnc-AC110781.3.1-1	lnc-AC110781.3.1-1:2	ENSG00000225968	ELFN1	ELFN1	NA	chr7:1775880-1787590	inner
LNCA_21_P0007817	0.87777543	A	0.8798278	A	0.998578416928895	0	lncRNA	TCONS_00021032	NA	NA	NA	NA	XLOC_009637	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009637), lincRNA [TCONS_00021032]"	chr12:7494416-7494475	hs|12p13.31	Agilent_HUMAN_G3V2	TCONS_00021032	TCONS_00021032	chr12	  7494416	  7494475	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008645	0.8778579	A	0.87954867	A	0.998828734009611	0	lncRNA	TCONS_00023443	NA	NA	NA	NA	XLOC_011288	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011288), lincRNA [TCONS_00023443]"	chr15:65100456-65100619	hs|15q22.31	Agilent_HUMAN_G3V2	TCONS_00023443	TCONS_00023443	chr15	 65100456	 65100619	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24463_PI429285431	6.9489813	P	7.2246513	P	0.826066596618607	0	lncRNA	26016-1_{1..477}	lnc-UBB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBB-2:1	chr17	 16331631	 16332107	+	lnc-UBB-2	lnc-UBB-2:1	ENSG00000239203.1	AC093484.4	TRPV2	NA	chr17:16321631-16340317	inner
CUST_1388_PI429285431	0.8936183	A	0.9050189	A	0.992128847293998	0	lncRNA	1377-1_{1..542}	"transcript_id ""ENST00000461528.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000461528.1"" | genecode_v17"	chr3	 78316093	 78316634	+	ENSG00000240241.1	ENST00000461528.1	RP11-314M24.1	RP11-314M24.1-001	NA	NA	NA	inter
LNCA_21_P0012220	4.729869	P	5.2440457	P	0.700192396252264	0	lncRNA	ENST00000429521	NA	NA	NA	NA	XLOC_l2_009136	NA	ENST00000429521	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009136), lincRNA [TCONS_l2_00017424]"	chr21:15335073-15323443	hs|21q11.2	Agilent_HUMAN_G3V2	ENST00000429521	ENST00000429521	chr21	 15323443	 15335073	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5955_PI429285431	1.2316741	A	1.0667164	A	1.12113320578004	0	lncRNA	5884-1_{1..627}	"transcript_id ""ENST00000605009.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605009.1"" | genecode_v17"	chr17	 68774745	 68775371	-	ENSG00000271239.1	ENST00000605009.1	RP11-238F2.1	RP11-238F2.1-001	NA	NA	NA	inter
CUST_5296_PI429285431	0.8917143	A	0.9027572	A	0.992374864974146	0	lncRNA	5236-1_{1..569}	"transcript_id ""ENST00000558982.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558982.1"" | genecode_v17"	chr15	 89922355	 89922923	+	ENSG00000255571.2	ENST00000558982.1	CTD-2335A18.1	CTD-2335A18.1-013	NA	NA	NA	inter
CUST_13606_PI429285431	8.441815	P	7.6980667	P	1.67452080401531	0	lncRNA	15245-1_{1..369}	lnc-CXorf48-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CXorf48-2:2	chrX	134254368	134254736	-	lnc-CXorf48-2	lnc-CXorf48-2:2	XLOC_008242	linc-FAM127B-2	NA	NA	NA	inter
CUST_38409_PI429285431	2.8671784	A	3.00003	A	0.912026974563565	0	lncRNA	39439-1_{1..2286}	n382355|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yyd.2||-0.9162460|-0.2500966	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n382355|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yyd.2||-0.9162460|-0.2500966	chr15	 25330336	 25332621	+	NA	NA	NA	NA	SNRPN	NA	chr15:25320336-25365599	inter
LNCA_21_P0006559	0.88105744	A	0.88214856	A	0.999243979176211	0	lncRNA	TCONS_00017415	NA	NA	NA	NA	XLOC_007952	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007952), lincRNA [TCONS_00017415]"	chrX:37748354-37755654	hs|Xp11.4	Agilent_HUMAN_G3V2	TCONS_00017415	TCONS_00017415	chrX	 37748354	 37755654	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35845_PI429285431	0.87337935	A	0.8837873	A	0.99281171897496	0	lncRNA	37244-2_{3001..4859}	n344515|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_63|NULL|-1.5385100|-0.2682354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344515|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_63|NULL|-1.5385100|-0.2682354	chr19	 56797715	 56799573	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40"	NA	inter
LNCA_21_P0009531	1.8415772	A	3.1066947	P	0.416065479608632	0	lncRNA	TCONS_00026425	NA	NA	NA	NA	XLOC_012771	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012771), lincRNA [TCONS_00026425]"	chr18:11918890-11914407	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_00026425	TCONS_00026425	chr18	 11914407	 11918890	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22243_PI429285431	5.031881	P	5.256459	P	0.855845330773008	0	lncRNA	23844-1_{1..690}	lnc-SPRED2-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPRED2-6:3	chr2	 66667357	 66668046	-	lnc-SPRED2-6	lnc-SPRED2-6:3	ENSG00000230749.2	MEIS1-AS2	MEIS1	NA	chr2:66662532-66677444	inner
CUST_36800_PI429285431	1.0836486	A	2.084522	A	0.499697394233462	0	lncRNA	37972-1_{1..519}	n345279|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_828|NULL|-1.3537900|-0.3357717	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345279|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_828|NULL|-1.3537900|-0.3357717	chr14	 91314205	 91314723	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013430	0.9103699	A	0.8832973	A	1.01894247104411	0	lncRNA	ENST00000425228	NA	NA	NA	NA	XLOC_l2_013859	NA	ENST00000425228	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013859), lincRNA [TCONS_l2_00027372]"	chr7:62840907-62840848	hs|7q11.21	Agilent_HUMAN_G3V2	ENST00000425228	ENST00000425228	chr7	 62840848	 62840907	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18615_PI429285431	0.8915971	A	0.8981298	A	0.995482113904112	0	lncRNA	20322-1_{1..3000}	lnc-PCYOX1L-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCYOX1L-2:8	chr5	148789725	148792724	+	lnc-PCYOX1L-2	lnc-PCYOX1L-2:8	ENSG00000253864	AC131025.8	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70"	NA	inter
LNCA_21_P0004550	4.265176	P	4.4401026	P	0.885812585445545	0	lncRNA	TCONS_00010875	NA	NA	NA	NA	XLOC_004700	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004700), lincRNA [TCONS_00010875]"	chr5:1043609-1043550	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00010875	TCONS_00010875	chr5	  1043550	  1043609	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15965_PI429285431	1.4399372	A	1.313807	A	1.0913623656227	0	lncRNA	17663-1_{1..326}	lnc-NOP14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOP14-1:1	chr4	  3064161	  3064486	-	lnc-NOP14-1	lnc-NOP14-1:1	XLOC_003857	linc-NOP14-1	NA	NA	NA	inter
CUST_952_PI429285431	4.7005854	P	3.9301136	P	1.70582754372051	0	lncRNA	942-1_{1..487}	"transcript_id ""ENST00000603948.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603948.1"" | genecode_v17"	chr2	 87880503	 87880989	+	ENSG00000222041.6	ENST00000603948.1	LINC00152	LINC00152-012	NA	NA	NA	inter
CUST_40382_PI429285431	7.630709	P	7.5638933	P	1.04740231602275	0	lncRNA	41176-1_{1..2540}	n409207|NR_033373|lncRNA|Homosapiens||RefGeneNoncode|NR_033373||-0.0479024|-0.1871103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n409207|NR_033373|lncRNA|Homosapiens||RefGeneNoncode|NR_033373||-0.0479024|-0.1871103	chr3	 47205859	 47208398	+	NA	NA	NA	NA	SETD2	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_KIF9:range=chr3:47270142-473188645'pad=0,hg19_refFlat_KIF9:range=chr3:47270142-473188645'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80chr3:47195859-47205467"	NA	inner
CUST_13178_PI429285431	0.8787728	A	0.88373435	A	0.99656682248367	0	lncRNA	14805-1_{1..2366}	lnc-NHLH2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NHLH2-1:1	chr1	116466692	116469057	-	lnc-NHLH2-1	lnc-NHLH2-1:1	XLOC_000972	linc-NHLH2-5	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
CUST_14618_PI429285431	12.302599	P	12.486502	P	0.880318200011019	0	lncRNA	16289-1_{1..606}	lnc-KLF13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF13-1:1	chr15	 31511492	 31512097	+	lnc-KLF13-1	lnc-KLF13-1:1	XLOC_011201	linc-KLF13-1	LOC283710	NA	chr15:31514970-31521740	inter
CUST_21491_PI429285431	3.1811633	A	3.5608294	P	0.768615459839061	0	lncRNA	23109-1_{1..376}	lnc-PSPC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PSPC1-1:1	chr13	 20249758	 20250133	-	lnc-PSPC1-1	lnc-PSPC1-1:1	ENSG00000226352.1	PSPC1-OT1	PSPC1	NA	chr13:20248896-20260024	inter
CUST_27694_PI429285431	0.88644	A	0.8973387	A	0.992474059608693	0	lncRNA	29273-1_{1..1376}	n324902|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171763|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171763|-1.0825900|-0.2151728	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324902|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171763|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171763|-1.0825900|-0.2151728	chr21	 15788121	 15789496	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49367_PI429285431	6.59321	P	6.734477	P	0.90672250600043	0	lncRNA	53180-1_{1..2409}	hg19_lincRNAsTranscripts_TCONS_l2_00023835 range=chr5:99384684-99390171 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023835 range=chr5:99384684-99390171 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 99384684	 99387092	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37290_PI429285431	8.849952	P	9.032156	P	0.881355523639967	0	lncRNA	38399-1_{1..433}	n345733|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1282|NULL|-1.2575000|-0.2629518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345733|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1282|NULL|-1.2575000|-0.2629518	chr9	 33491093	 33491525	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90"	NA	inter
CUST_47834_PI429285431	8.964957	P	8.739368	P	1.16925451529148	0	lncRNA	51741-1_{1..648}	"gi|397140175|ref|XR_159169.1| PREDICTED: Homo sapiens uncharacterized LOC100996756 (LOC100996756), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397140175|ref|XR_159169.1| PREDICTED: Homo sapiens uncharacterized LOC100996756 (LOC100996756), misc_RNA"	NW_003871055.3	  3202568	  3203215	+	100996756	XR_159169.2	NA	NA	NA	NA	NA	Unknown
CUST_3727_PI429285431	0.8835507	A	0.8888372	A	0.996342382867123	0	lncRNA	3696-1_{1..534}	"transcript_id ""ENST00000560700.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560700.1"" | genecode_v17"	chr10	 72698810	 72699343	+	ENSG00000259267.1	ENST00000560700.1	RP11-432J9.6	RP11-432J9.6-001	NA	NA	NA	inter
CUST_25184_PI429285431	6.690127	P	6.7547693	P	0.956182362862635	0	lncRNA	26715-1_{1..439}	lnc-MUC20-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MUC20-2:3	chr3	195274166	195274604	+	lnc-MUC20-2	lnc-MUC20-2:3	ENSG00000223711.1	AC091633.3	APOD	NA	chr3:195281388-195284285	inter
LNCA_21_P0001611	2.9958808	P	2.4269328	A	1.48344146422755	0	lncRNA	TCONS_00001776	NA	NA	NA	NA	XLOC_001162	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001162), lincRNA [TCONS_00001776]"	chr1:203507329-203507270	hs|1q32.1	Agilent_HUMAN_G3V2	TCONS_00001776	TCONS_00001776	chr1	203507270	203507329	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39894_PI429285431	4.555344	P	4.365843	P	1.14036921623769	0	lncRNA	40779-1_{1..2022}	n406595|NR_024114|lncRNA|Homosapiens||RefGeneNoncode|NR_024114||4.5110300|-0.2988545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406595|NR_024114|lncRNA|Homosapiens||RefGeneNoncode|NR_024114||4.5110300|-0.2988545	chr3	 40547529	 40549550	+	NA	NA	NA	NA	ZNF620	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10chr3:40547530-40559200"	NA	inner
LNCA_21_P0014484	3.1362574	P	2.9281702	A	1.15515560286002	0	lncRNA	XR_110040	XR_110040	XR_110040	NA	NA	LOC100505737	uncharacterized LOC100505737	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505737 (LOC100505737), miscRNA [XR_110040]"	chr3:15677203-15677144	hs|3p25.1	Agilent_HUMAN_G3V2	XR_110040	XR_110040	chr3	 15677144	 15677203	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11573_PI429285431	6.2530174	P	6.282378	P	0.979854471210305	0	lncRNA	13152-1_{1..913}	lnc-RP11-90M5.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-90M5.1.1-2:1	chr13	 30462166	 30463078	+	lnc-RP11-90M5.1.1-2	lnc-RP11-90M5.1.1-2:1	XLOC_010331	linc-USPL1-6	NA	NA	NA	inter
CUST_3125_PI429285431	0.9301838	A	1.3067613	A	0.770262716253142	0	lncRNA	3104-1_{1..2109}	"transcript_id ""ENST00000522992.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522992.1"" | genecode_v17"	chr8	 58890917	 58893025	+	ENSG00000205293.3	ENST00000522992.1	RP11-1112C15.1	RP11-1112C15.1-001	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-58.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80"	NA	inter
LNCA_21_P0009670	0.9053823	A	2.6619937	A	0.295942458874549	0	lncRNA	BC038202	NA	BC038202	NA	Hs.385737	XLOC_013288	NA	NA	THC2609217	NA	"BROAD Institute lincRNA (XLOC_013288), lincRNA [TCONS_00026844]"	chr19:28983477-28983418	hs|19q12	Agilent_HUMAN_G3V2	BC038202	BC038202	chr19	 28983418	 28983477	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14712_PI429285431	0.89369357	A	1.1501161	A	0.837161267594151	0	lncRNA	16376-1_{1..440}	lnc-C10orf107-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf107-1:1	chr10	 63242680	 63243119	+	lnc-C10orf107-1	lnc-C10orf107-1:1	XLOC_008495	linc-C10orf107-1	NA	NA	NA	inter
CUST_5897_PI429285431	0.9075962	A	1.5349624	A	0.647357159580972	0	lncRNA	5828-1_{1..650}	"transcript_id ""ENST00000505978.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505978.1"" | genecode_v17"	chr17	 49410040	 49410689	+	ENSG00000249982.1	ENST00000505978.1	RP11-1018N14.3	RP11-1018N14.3-001	NA	NA	NA	inter
CUST_24257_PI429285431	2.0202901	A	2.4561846	A	0.739235271738498	0	lncRNA	25808-1_{1..465}	lnc-HERC1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HERC1-1:7	chr15	 63892788	 63893252	-	lnc-HERC1-1	lnc-HERC1-1:7	ENSG00000259248.1	RP11-265M18.2	HERC1	NA	chr15:63900817-63902938	inter
CUST_40108_PI429285431	2.8063676	A	2.072249	A	1.66338093311093	0	lncRNA	40953-1_{1..2874}	n407543|NR_027000|lncRNA|Homosapiens||RefGeneNoncode|NR_027000||1.3557400|-0.2269590	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407543|NR_027000|lncRNA|Homosapiens||RefGeneNoncode|NR_027000||1.3557400|-0.2269590	chr8	  7118140	  7121013	-	NA	NA	NA	NA	FAM90A15	NA	chr8:7108140-7117436	inter
CUST_1298_PI429285431	0.8898174	A	0.9013658	A	0.992027211724125	0	lncRNA	1288-1_{1..561}	"transcript_id ""ENST00000437047.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437047.1"" | genecode_v17"	chr3	  8615412	  8615972	-	ENSG00000224884.1	ENST00000437047.1	AC034187.2	AC034187.2-001	LMCD1	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90chr3:8605412-8609806"	NA	inter
LNCA_19_P00805954	4.053877	P	3.4878004	P	1.48049190274045	0	lncRNA	TCONS_00011660	NA	NA	NA	NA	XLOC_005143	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005143), lincRNA [TCONS_00011660]"	chr6:5043764-5043823	hs|6p25.1	Agilent_HUMAN_G3V2	TCONS_00011660	TCONS_00011660	chr6	  5043764	  5043823	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35562_PI429285431	5.1507673	P	9.675653	P	0.0434383857146892	0	lncRNA	36976-1_{1..1472}	n342692|CR595320|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5194|NULL|1.2017700|-0.1943443	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342692|CR595320|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5194|NULL|1.2017700|-0.1943443	chr17	 34415623	 34417094	-	NA	NA	NA	NA	CCL3	NA	chr17:34415602-34417506	inner
CUST_30808_PI429285431	7.4226856	P	7.3477955	P	1.05328079725892	0	lncRNA	32595-1_{1..351}	n336732|Z74690|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328033|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328033|1.4289700|-0.0698645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336732|Z74690|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328033|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328033|1.4289700|-0.0698645	chr14	106330795	106331145	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19639_PI429285431	0.8844372	A	1.1545783	A	0.829238439785465	0	lncRNA	21295-1_{1..634}	lnc-EIF6-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF6-1:8	chr20	 33865812	 33866445	-	lnc-EIF6-1	lnc-EIF6-1:8	ENSG00000126005.10	MT1P3	MMP24	NA	chr20:33855812-33864804	inter
CUST_27309_PI429285431	0.8832925	A	0.892311	A	0.993768349927846	0	lncRNA	28868-1_{1..351}	n324462|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041359|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041359|-0.7739160|-0.4373361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324462|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041359|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041359|-0.7739160|-0.4373361	chr6	 84494492	 84494842	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29557_PI429285431	1.7639769	A	4.309793	P	0.17125095042313	0	lncRNA	31317-1_{1..282}	n333041|AF199613|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000073726|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000073726|-1.1341400|-0.0929475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333041|AF199613|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000073726|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000073726|-1.1341400|-0.0929475	chrX	138286221	138286502	-	NA	NA	NA	NA	FGF13	NA	chrX:138276221-138287185	inner
CUST_10198_PI429285431	4.179921	P	4.047751	P	1.09594089905789	0	lncRNA	11723-1_{1..242}	lnc-CBLB-7:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLB-7:7	chr3	106928309	106928550	-	lnc-CBLB-7	lnc-CBLB-7:7	XLOC_003204	linc-CBLB-6	NA	NA	NA	inter
CUST_1032_PI429285431	1.264375	A	0.8886092	A	1.29752811552454	0	lncRNA	1022-1_{1..792}	"transcript_id ""ENST00000426124.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426124.1"" | genecode_v17"	chr2	112365418	112366209	+	ENSG00000225744.1	ENST00000426124.1	AC017002.4	AC017002.4-001	NA	NA	NA	inter
LNCA_21_P0007820	1.1937261	A	0.8964095	A	1.22885662393231	0	lncRNA	TCONS_00021053	NA	NA	NA	NA	XLOC_009652	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009652), lincRNA [TCONS_00021053]"	chr12:9519322-9519797	hs|12p13.31	Agilent_HUMAN_G3V2	TCONS_00021053	TCONS_00021053	chr12	  9519322	  9519797	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36547_PI429285431	0.91375715	A	0.8880215	A	1.0179986512619	0	lncRNA	37743-1_{1..2504}	n345045|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_594|NULL|-1.3720600|-0.4059952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345045|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_594|NULL|-1.3720600|-0.4059952	chr9	 21907091	 21909594	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20"	NA	inter
CUST_19099_PI429285431	5.744272	P	5.4932094	P	1.19008333410838	0	lncRNA	20788-1_{1..410}	lnc-OR51B4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OR51B4-3:1	chr11	  5301818	  5302227	-	lnc-OR51B4-3	lnc-OR51B4-3:1	Beta-globin	transcript_alias_1	NA	NA	NA	inter
CUST_31275_PI429285431	0.912762	A	0.90260565	A	1.00706468332961	0	lncRNA	33064-1_{1..1450}	n337735|AF070565|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|117|NULL|-1.1826200|-0.3460537	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337735|AF070565|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|117|NULL|-1.1826200|-0.3460537	chrX	 67233311	 67234760	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014841	0.88302565	A	0.8917166	A	0.993994001065758	0	lncRNA	XR_132711	XR_132711	XR_132711	NA	Hs.476604	ADAMTS9-AS1	ADAMTS9 antisense RNA 1 (non-protein coding)	NA	THC2605659	NA	"PREDICTED: Homo sapiens hypothetical LOC100507082, transcript variant 2 (LOC100507082), miscRNA [XR_132711]"	chr3:64573766-64573825	hs|3p14.1	Agilent_HUMAN_G3V2	XR_132711	XR_132711	chr3	 64573766	 64573825	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002948	0.88192785	A	0.8898022	A	0.99455678477345	0	lncRNA	TCONS_00005993	NA	NA	NA	NA	XLOC_002618	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002618), lincRNA [TCONS_00005993]"	chr3:39300707-39300766	hs|3p22.2	Agilent_HUMAN_G3V2	TCONS_00005993	TCONS_00005993	chr3	 39300707	 39300766	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10942_PI429285431	2.4733782	A	1.252617	A	2.33069657917498	0	lncRNA	12483-1_{1..992}	lnc-CSF2RB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CSF2RB-1:1	chr22	 37364027	 37365018	+	lnc-CSF2RB-1	lnc-CSF2RB-1:1	XLOC_014231	linc-MPST	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_32_PI429201921	5.9480824	P	6.170822	P	0.85693661403524	0	lncRNA	33-1_{1..1098}	TC19002480.hg.1	TCONS_l2_00013109-XLOC_l2_007048 // Broad TUCP // linc-FCGBP chr19:-:40448554-40449636 // chr19 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00013110-XLOC_l2_007048 // Broad TUCP // linc-FCGBP chr19:-:40448563-40449653 // chr19 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr19:-:40448554-40449636	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00013109-XLOC_l2_007048	linc-FCGBP	chr19	 40448554	 40449636	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46141_PI429285431	0.89890933	A	1.2441832	A	0.787158534334419	0	lncRNA	50392-2_{3001..3583}	"gi|300068997|ref|NR_033954.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|300068997|ref|NR_033954.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 7 (P2RX7), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NR_033954.1	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30"	NA	Unknown
LNCA_21_P0013813	0.8785204	A	0.8827575	A	0.997067374652642	0	lncRNA	TCONS_l2_00030477	NA	NA	NA	NA	XLOC_l2_015716	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015716), lincRNA [TCONS_l2_00030477]"	chrX:45708672-45708613	hs|Xp11.3	Agilent_HUMAN_G3V2	TCONS_l2_00030477	TCONS_l2_00030477	chrX	 45708613	 45708672	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3704_PI429285431	4.8986516	P	4.8813596	P	1.01205801980627	0	lncRNA	3672-1_{1..434}	"transcript_id ""ENST00000517854.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517854.1"" | genecode_v17"	chr10	 62494100	 62494533	+	ENSG00000254271.1	ENST00000517854.1	RP11-131N11.4	RP11-131N11.4-001	ANK3	NA	chr10:62484100-62493284	inter
CUST_34345_PI429285431	0.90297824	A	0.8774072	A	1.01788250530336	0	lncRNA	35837-1_{1..2178}	n341216|AK057151|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3684|NULL|-1.2555600|-0.3859167	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341216|AK057151|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3684|NULL|-1.2555600|-0.3859167	chr7	 28863332	 28865509	+	NA	NA	NA	NA	CREB5	NA	chr7:28853332-28865511	inner
CUST_44397_PI429285431	2.3984528	A	2.4680083	A	0.952931554767818	0	lncRNA	49013-1_{1..2219}	"gi|300795878|ref|NR_034077.1| Homo sapiens THAP9 antisense RNA 1 (THAP9-AS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|300795878|ref|NR_034077.1| Homo sapiens THAP9 antisense RNA 1 (THAP9-AS1), transcript variant 3, non-coding RNA"	Chr4	 83814605	 83816823	-	100499177	NR_034077.1	NA	NA	NA	"hg19_refFlat_THAP9:range=chr4:83821956-838400775'pad=0,hg19_refFlat_THAP9:range=chr4:83821956-838400775'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.40"	NA	inter
CUST_42531_PI429285431	12.588217	P	12.808737	P	0.858256033851073	0	lncRNA	45326-1_{1..90}	ENST00000516300 ncrna:snoRNA chromosome:GRCh37:17:50303618:50303707:-1 gene:ENSG00000252109 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516300 ncrna:snoRNA chromosome:GRCh37:17:50303618:50303707:-1 gene:ENSG00000252109 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 50303618	 50303707	-	ENSG00000252109	ENST00000516300	NA	NA	NA	NA	NA	inter
CUST_37557_PI429285431	2.2366934	A	2.3277562	A	0.938830879453014	0	lncRNA	38660-2_{3001..5106}	n346032|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1582|NULL|-1.3378400|-0.3890786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,lncrnadb20130808,NONCODERv3,"	>n346032|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1582|NULL|-1.3378400|-0.3890786	chr7	 96597574	 96599679	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30"	NA	inter
LNCA_21_P0011011	0.87781775	A	0.8794583	A	0.998863503694585	0	lncRNA	ENST00000533106	NA	NA	NA	NA	XLOC_l2_002659	NA	ENST00000533106	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002659), lincRNA [TCONS_l2_00005025]"	chr11:59927297-59927238	hs|11q12.2	Agilent_HUMAN_G3V2	ENST00000533106	ENST00000533106	chr11	 59927238	 59927297	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18655_PI429285431	5.973507	P	6.0576544	P	0.94334186483284	0	lncRNA	20358-1_{1..707}	lnc-KPNA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KPNA2-1:1	chr17	 66111202	 66111908	+	lnc-KPNA2-1	lnc-KPNA2-1:1	ENSG00000237854	AC005332.1	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00"	NA	inter
CUST_3356_PI429285431	1.1147604	A	1.3486186	A	0.850357736147794	0	lncRNA	3331-1_{1..728}	"transcript_id ""ENST00000430387.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430387.1"" | genecode_v17"	chr9	  3647335	  3648062	+	ENSG00000237359.1	ENST00000430387.1	RP11-509J21.2	RP11-509J21.2-001	NA	NA	NA	inter
CUST_13985_PI429285431	1.0342969	A	0.8853346	A	1.10877166919274	0	lncRNA	15630-1_{1..1028}	lnc-TMEM132C-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132C-6:2	chr12	127636635	127637662	+	lnc-TMEM132C-6	lnc-TMEM132C-6:2	XLOC_009944	linc-TMEM132C-5	NA	NA	NA	inter
LNCA_21_P0010817	1.2617017	A	0.8796715	A	1.30317442848654	0	lncRNA	TCONS_l2_00002974	NA	NA	NA	NA	XLOC_l2_001549	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001549), lincRNA [TCONS_l2_00002974]"	chr10:37597786-37598042	hs|10p11.21	Agilent_HUMAN_G3V2	TCONS_l2_00002974	TCONS_l2_00002974	chr10	 37597786	 37598042	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30450_PI429285431	16.814817	P	16.862755	P	0.967317899328522	0	lncRNA	32230-1_{1..351}	n335589|CR593754|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000272949|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000272949|1.6675000|-0.0807206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335589|CR593754|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000272949|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000272949|1.6675000|-0.0807206	chr19	 58904721	 58905071	+	NA	NA	NA	NA	RPS5	NA	chr19:58898636-58906171	inner
CUST_33135_PI429285431	7.3131223	P	7.3841796	P	0.951940099224353	0	lncRNA	34731-1_{1..1200}	n339824|BC054864|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2271|NULL|-1.0240800|-0.3202076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339824|BC054864|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2271|NULL|-1.0240800|-0.3202076	chr18	 29265617	 29266816	+	NA	NA	NA	NA	B4GALT6	NA	chr18:29255617-29264686	inter
CUST_34954_PI429285431	1.1939278	A	0.89484555	A	1.23036148732794	0	lncRNA	36371-1_{1..2252}	n341872|BC020387|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4352|NULL|-1.2782900|-0.3734015	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341872|BC020387|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4352|NULL|-1.2782900|-0.3734015	chr12	 27951459	 27953710	-	NA	NA	NA	NA	KLHDC5	NA	chr12:27941459-27955973	inner
CUST_9738_PI429285431	5.897782	P	5.898603	P	0.999431088056565	0	lncRNA	11255-1_{1..432}	lnc-WNT7A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WNT7A-1:3	chr3	 13693299	 13693730	-	lnc-WNT7A-1	lnc-WNT7A-1:3	XLOC_003052	linc-NUP210-2	NA	NA	NA	inter
LNCA_21_P0014102	4.977752	P	4.9273453	P	1.03555680922581	0	lncRNA	XR_108434	XR_108434	XR_108434	NA	Hs.632541	LOC643072	uncharacterized LOC643072	NA	THC2493015	NA	"PREDICTED: Homo sapiens hypothetical LOC643072 (LOC643072), miscRNA [XR_108434]"	chr2:160473503-160473562	hs|2q24.2	Agilent_HUMAN_G3V2	XR_108434	XR_108434	chr2	160473503	160473562	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002389	0.88160276	A	0.8829315	A	0.999079411617029	0	lncRNA	TCONS_00004113	NA	NA	NA	NA	XLOC_001963	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001963), lincRNA [TCONS_00004113]"	chr2:6771988-6771929	hs|2p25.2	Agilent_HUMAN_G3V2	TCONS_00004113	TCONS_00004113	chr2	  6771929	  6771988	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007491	0.8817032	A	0.883114	A	0.999022585938272	0	lncRNA	XR_111350	XR_111350	XR_111350	NA	Hs.385496	LOC100509968	uncharacterized LOC100509968	NA	THC2604496	NA	"PREDICTED: Homo sapiens hypothetical LOC100509968 (LOC100509968), miscRNA [XR_111350]"	chr12:128435667-128435726	hs|12q24.32	Agilent_HUMAN_G3V2	XR_111350	XR_111350	chr12	128435667	128435726	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17279_PI429285431	2.111281	A	2.1390145	A	0.980960193872735	0	lncRNA	18997-1_{1..273}	lnc-NAALADL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAALADL2-2:1	chr3	176431486	176431758	+	lnc-NAALADL2-2	lnc-NAALADL2-2:1	XLOC_002927	linc-KCNMB2-9	NA	NA	NA	inter
CUST_32682_PI429285431	3.870777	P	3.7535517	P	1.08464678063164	0	lncRNA	34332-1_{1..3000}	n339313|AL832093|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1745|NULL|-0.9061370|-0.1309586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339313|AL832093|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1745|NULL|-0.9061370|-0.1309586	chr16	 85176297	 85179296	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29860_PI429285431	2.9096732	A	3.436942	P	0.693867067565443	0	lncRNA	31623-1_{1..265}	n333782|L17326|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192305|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192305|-0.9243720|-0.2088428	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333782|L17326|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192305|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192305|-0.9243720|-0.2088428	chr3	 50277151	 50277415	+	NA	NA	NA	NA	GNAI2	NA	chr3:50273647-50287416	inner
CUST_21511_PI429285431	0.91251016	A	0.9204658	A	0.994500747120952	0	lncRNA	23129-1_{1..461}	lnc-KCTD3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCTD3-2:1	chr1	216260064	216260524	+	lnc-KCTD3-2	lnc-KCTD3-2:1	ENSG00000233620.1	RP11-22M7.2	USH2A	"hg19_refFlat_USH2A:range=chr1:215799123-2165956785'pad=0,hg19_refFlat_USH2A:range=chr1:215799123-2165956785'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90chr1:216250064-216270259"	NA	inner
LNCA_21_P0003586	2.9657798	P	3.6588762	P	0.618524908506775	0	lncRNA	TCONS_00008015	NA	NA	NA	NA	XLOC_003480	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003480), lincRNA [TCONS_00008015]"	chr4:26765978-26766256	hs|4p15.2	Agilent_HUMAN_G3V2	TCONS_00008015	TCONS_00008015	chr4	 26765978	 26766256	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49385_PI429285431	6.1139426	P	6.26456	P	0.900864855830086	0	lncRNA	53199-1_{1..695}	hg19_lincRNAsTranscripts_TCONS_l2_00023133 range=chr5:132322666-132323777 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023133 range=chr5:132322666-132323777 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	132322666	132323360	-	NA	NA	NA	NA	ZCCHC10	NA	chr5:132332677-132333777	inter
CUST_45568_PI429285431	0.9094188	A	0.9113285	A	0.998677172537891	0	lncRNA	49966-1_{1..3000}	"gi|211971053|ref|NR_024380.1| Homo sapiens zinc finger protein 91 pseudogene (LOC441666), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|211971053|ref|NR_024380.1| Homo sapiens zinc finger protein 91 pseudogene (LOC441666), non-coding RNA"	Chr10	 42827314	 42830313	-	441666	NR_024380.1	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
LNCA_21_P0014658	2.3175933	A	1.3244838	A	1.99047051385521	0	lncRNA	ENST00000456091	XR_110929	XR_110929	NA	Hs.449499	LOC100506610	NA	ENST00000456091	THC2668740	NA	"PREDICTED: Homo sapiens hypothetical LOC100506610 (LOC100506610), miscRNA [XR_110929]"	chrX:13391668-13391727	hs|Xp22.2	Agilent_HUMAN_G3V2	ENST00000456091	ENST00000456091	chrX	 13391668	 13391727	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28797_PI429285431	0.88159883	A	0.8886238	A	0.995142497859018	0	lncRNA	30505-1_{1..790}	n326204|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091467|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091467|0.0938357|-0.3303303	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326204|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000091467|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000091467|0.0938357|-0.3303303	chr1	222463071	222463860	-	NA	NA	NA	NA	NA	"hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
CUST_6416_PI429285431	0.888694	A	0.88080144	A	1.0054856973477	0	lncRNA	6355-1_{1..458}	"transcript_id ""ENST00000589471.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589471.1"" | genecode_v17"	chr19	 28340638	 28341095	-	ENSG00000266977.1	ENST00000589471.1	CTC-459F4.5	CTC-459F4.5-001	NA	NA	NA	inter
LNCA_21_P0014940	9.518349	P	8.825053	P	1.6169734605561	0	lncRNA	XR_133430	XR_133430	XR_133430	NA	Hs.645747	LOC100653236	uncharacterized LOC100653236	NA	THC2557328	NA	"PREDICTED: Homo sapiens hypothetical LOC100653236 (LOC100653236), miscRNA [XR_133430]"	chr6:74227520-74227579	hs|6q13	Agilent_HUMAN_G3V2	XR_133430	XR_133430	chr6	 74227520	 74227579	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20598_PI429285431	0.88022447	A	1.1276398	A	0.842404279188531	0	lncRNA	22237-1_{1..800}	lnc-KCTD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCTD3-1:1	chr1	216074067	216074866	+	lnc-KCTD3-1	lnc-KCTD3-1:1	ENSG00000229242.1	RP5-1111A8.3	USH2A	"hg19_refFlat_USH2A:range=chr1:215799123-2165956785'pad=0,hg19_refFlat_USH2A:range=chr1:215799123-2165956785'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10chr1:216064067-216084806"	NA	inner
CUST_32325_PI429285431	0.9075668	A	0.8959898	A	1.00805684802521	0	lncRNA	34007-1_{1..1770}	n338903|BC044304|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1329|NULL|0.1032900|-0.3052377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338903|BC044304|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1329|NULL|0.1032900|-0.3052377	chr2	 88838237	 88840006	+	NA	NA	NA	NA	EIF2AK3	"hg19_refFlat_EIF2AK3:range=chr2:88857254-889267925'pad=0,hg19_refFlat_EIF2AK3:range=chr2:88857254-889267925'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30chr2:88856259-88885128"	NA	inner
CUST_50469_PI429285431	0.89378923	A	1.0845335	A	0.876153607002413	0	lncRNA	54170-3_{6001..7951}	hg19_lincRNAsTranscripts_TCONS_l2_00030536 range=chrX:73492776-73504672 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030536 range=chrX:73492776-73504672 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 73498776	 73500726	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_27563_PI429285431	4.7446795	P	4.9310107	P	0.878837782657502	0	lncRNA	29142-1_{1..3000}	n324753|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000314912|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000314912|-0.9636790|-0.3455938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324753|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000314912|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000314912|-0.9636790|-0.3455938	chr22	 17338026	 17341025	+	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-61.30;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80"	NA	inter
LNCA_21_P0006037	2.6200554	A	2.0499878	A	1.48459313220769	0	lncRNA	ENST00000425157	NA	NA	NA	NA	XLOC_007496	NA	ENST00000425157	NA	NA	"BROAD Institute lincRNA (XLOC_007496), lincRNA [TCONS_00015729]"	chr9:106015393-106015452	hs|9q31.1	Agilent_HUMAN_G3V2	ENST00000425157	ENST00000425157	chr9	106015393	106015452	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43831_PI429285431	6.565338	P	5.8305926	P	1.66410377034271	0	lncRNA	48555-1_{1..2722}	"gi|208610003|ref|NR_024191.1| Homo sapiens atlastin GTPase 2 (ATL2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|208610003|ref|NR_024191.1| Homo sapiens atlastin GTPase 2 (ATL2), transcript variant 3, non-coding RNA"	Chr2	 38522027	 38524748	-	64225	NR_024191.1	NA	NA	NA	NA	NA	inter
CUST_5252_PI429285431	0.9154795	A	0.92080396	A	0.996316167583773	0	lncRNA	5192-1_{1..1931}	"transcript_id ""ENST00000566715.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566715.1"" | genecode_v17"	chr15	 78433585	 78435515	+	ENSG00000260988.1	ENST00000566715.1	RP11-285A1.1	RP11-285A1.1-001	CIB2	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00chr15:78423585-78423878"	NA	inter
LNCA_21_P0004594	5.251462	P	4.895846	P	1.27953179743423	0	lncRNA	XR_132521	XR_132521	XR_132521	NA	Hs.188825	LOC100508120	uncharacterized LOC100508120	NA	THC2522321	NA	"PREDICTED: Homo sapiens hypothetical LOC100508120, transcript variant 1 (LOC100508120), miscRNA [XR_132521]"	chr6:2413723-2413782	hs|6p25.2	Agilent_HUMAN_G3V2	XR_132521	XR_132521	chr6	  2413723	  2413782	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30762_PI429285431	4.868915	P	3.571963	P	2.45709220945754	0	lncRNA	32547-1_{1..298}	n336587|Z25430|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326711|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326711|0.9702130|-0.2649334	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336587|Z25430|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326711|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326711|0.9702130|-0.2649334	chr20	 43610521	 43610818	+	NA	NA	NA	NA	STK4	NA	chr20:43600521-43633802	inner
CUST_28633_PI429285431	1.0543959	A	0.91881394	A	1.09853585613737	0	lncRNA	30321-1_{1..1339}	n326007|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047659|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047659|-0.3587230|-0.3234424	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326007|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047659|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047659|-0.3587230|-0.3234424	chr10	 38977631	 38978969	-	NA	NA	NA	NA	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20"	NA	inter
LNCA_21_P0006935	2.0800846	A	0.9283258	A	2.22184596227349	0	lncRNA	TCONS_00018385	NA	NA	NA	NA	XLOC_008665	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008665), lincRNA [TCONS_00018385]"	chr10:131166685-131166744	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_00018385	TCONS_00018385	chr10	131166685	131166744	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22579_PI429285431	0.9237785	A	2.0856147	A	0.446943323128985	0	lncRNA	24166-1_{1..408}	lnc-NDUFAF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFAF2-1:1	chr5	 60215204	 60215611	+	lnc-NDUFAF2-1	lnc-NDUFAF2-1:1	ENSG00000233847.1	AC104113.3	ERCC8	"hg19_refFlat_ERCC8:range=chr5:60170442-602408355'pad=0,hg19_refFlat_ERCC8:range=chr5:60170442-602408355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70chr5:60205204-60225400"	NA	inner
CUST_31967_PI429285431	8.781842	P	6.6260033	P	4.45627634305067	0	lncRNA	33690-1_{1..1101}	n338524|AK056963|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|922|NULL|-1.2842000|-0.3297121	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338524|AK056963|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|922|NULL|-1.2842000|-0.3297121	chr1	214522046	214523146	-	NA	NA	NA	NA	PTPN14	NA	chr1:214522039-214533147	inner
CUST_49096_PI429285431	0.9639096	A	0.9203406	A	1.03066036668722	0	lncRNA	52920-1_{1..2404}	hg19_lincRNAsTranscripts_TCONS_l2_00020436 range=chr4:14113616-14142085 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020436 range=chr4:14113616-14142085 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 14113616	 14116019	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_116_PI429201921	0.8957787	A	0.91123307	A	0.989345017795196	0	lncRNA	113-2_{3001..3352}	TC09002545.hg.1	TCONS_00015821-XLOC_007704 // Rinn lincRNAs // linc-FAM75A7-10 chr9:-:65880532-65883885 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:-:65880532-65883885	NA	Affy_HUMAN_HTA2.0	TCONS_00015821-XLOC_007704	linc-FAM75A7-10	chr9	 65880532	 65883885	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006793	0.90530294	A	0.92697906	A	0.985087566793497	0	lncRNA	BC039338	NA	BC039338	NA	Hs.623813	XLOC_008959	NA	NA	THC2727788	NA	"BROAD Institute lincRNA (XLOC_008959), lincRNA [TCONS_00018052]"	chr10:118918226-118918167	hs|10q25.3	Agilent_HUMAN_G3V2	BC039338	BC039338	chr10	118918167	118918226	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11614_PI429285431	2.4227314	A	2.602952	A	0.882568034022992	0	lncRNA	13194-1_{1..1147}	lnc-ORAOV1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ORAOV1-4:1	chr11	 69167672	 69168818	-	lnc-ORAOV1-4	lnc-ORAOV1-4:1	XLOC_009484	linc-MRGPRF-2	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-62.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70"	NA	inter
CUST_51728_PI429285431	8.452754	P	8.3796425	P	1.05198307953242	0	lncRNA	55283-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00011792 range=chr18:14857495-14909914 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011792 range=chr18:14857495-14909914 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr18	 14857495	 14860494	+	NA	NA	NA	NA	ANKRD30B	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50chr18:14847495-14852737"	NA	inter
CUST_22447_PI429285431	0.900309	A	2.5549824	A	0.317609638560407	0	lncRNA	24034-1_{1..1483}	lnc-HSFY2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-HSFY2-1:1	chrY	 20990471	 20991953	-	lnc-HSFY2-1	lnc-HSFY2-1:1	ENSG00000248395.1	AC007379.5	NA	NA	NA	inter
CUST_22830_PI429285431	1.0878053	A	0.929235	A	1.11618046331495	0	lncRNA	24410-1_{1..562}	lnc-ZC3H12D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZC3H12D-1:1	chr6	149564762	149565323	-	lnc-ZC3H12D-1	lnc-ZC3H12D-1:1	ENSG00000225924.1	RP1-111D6.2	NA	NA	NA	inter
LNCA_21_P0010054	0.899835	A	0.9170547	A	0.988135162436975	0	lncRNA	TCONS_00028430	NA	NA	NA	NA	XLOC_013780	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013780), lincRNA [TCONS_00028430]"	chr20:47470579-47470520	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028430	TCONS_00028430	chr20	 47470520	 47470579	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22953_PI429285431	1.1072663	A	0.9295825	A	1.13106653627487	0	lncRNA	24529-1_{1..332}	lnc-UBE2N-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBE2N-1:3	chr12	 93771213	 93771544	-	lnc-UBE2N-1	lnc-UBE2N-1:3	ENSG00000257252.1	RP11-486A14.2	NUDT4	NA	chr12:93771701-93781484	inter
LNCA_21_P0011753	8.067557	P	7.574974	P	1.40696164501267	0	lncRNA	TCONS_l2_00013129	NA	NA	NA	NA	XLOC_l2_007063	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007063), lincRNA [TCONS_l2_00013129]"	chr19:43882851-43882792	hs|19q13.31	Agilent_HUMAN_G3V2	TCONS_l2_00013129	TCONS_l2_00013129	chr19	 43882792	 43882851	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17113_PI429285431	0.9032832	A	0.9045474	A	0.999124107152615	0	lncRNA	18823-1_{1..250}	lnc-REG1B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-REG1B-2:1	chr2	 79108611	 79108860	-	lnc-REG1B-2	lnc-REG1B-2:1	XLOC_002177	linc-LRRTM4-6	NA	NA	NA	inter
CUST_20822_PI429285431	0.8881166	A	0.9015414	A	0.990737798634205	0	lncRNA	22453-1_{1..687}	lnc-LRTM2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-LRTM2-2:1	chr12	  2129092	  2129778	+	lnc-LRTM2-2	lnc-LRTM2-2:1	ENSG00000256837.1	CACNA1C-IT1	NA	NA	NA	inter
CUST_51406_PI429285431	6.6459904	P	7.1903243	P	0.685707924422605	0	lncRNA	54987-1_{1..2724}	hg19_lincRNAsTranscripts_TCONS_l2_00009861 range=chr16:85203017-85391579 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009861 range=chr16:85203017-85391579 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 85203017	 85205740	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45126_PI429285431	4.2596216	P	4.5307837	P	0.828651792639435	0	lncRNA	49606-1_{1..1329}	"gi|410170864|ref|XR_171111.1| PREDICTED: Homo sapiens carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2-like (LOC101060081), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170864|ref|XR_171111.1| PREDICTED: Homo sapiens carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2-like (LOC101060081), misc_RNA"	NT_113901.1	    79335	    80663	+	101060081	XR_171111.2	NA	NA	NA	NA	NA	Unknown
CUST_17914_PI429285431	5.0652223	P	5.484293	P	0.747906226760284	0	lncRNA	19645-1_{1..760}	lnc-CCDC71L-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC71L-1:3	chr7	106145155	106145914	-	lnc-CCDC71L-1	lnc-CCDC71L-1:3	XLOC_006555	linc-NAMPT	NA	NA	NA	inter
CUST_38745_PI429285431	0.9156146	A	0.92491263	A	0.99357582056492	0	lncRNA	39736-2_{3001..3222}	n384279|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003dqm.1||-1.2099200|-0.3762285	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384279|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003dqm.1||-1.2099200|-0.3762285	chr3	 86121792	 86122013	+	NA	NA	NA	NA	CADM2	NA	chr3:86108792-86123579	inner
CUST_31551_PI429285431	1.8264018	A	1.7275758	A	1.07090165651366	0	lncRNA	33309-1_{1..1120}	n338041|BC000825|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|428|NULL|1.6858000|-0.1934438	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338041|BC000825|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|428|NULL|1.6858000|-0.1934438	chr1	 87594508	 87595627	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19694_PI429285431	0.88824797	A	0.88721496	A	1.00071628437821	0	lncRNA	21352-1_{1..494}	lnc-HEATR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HEATR1-1:1	chr1	236713440	236713933	-	lnc-HEATR1-1	lnc-HEATR1-1:1	ENSG00000230325.1	RP11-385F5.4	LGALS8	NA	chr1:236703440-236716281	inner
CUST_29299_PI429285431	2.3530557	A	2.0336525	A	1.24781425850149	0	lncRNA	31050-1_{1..228}	n332459|EF693749|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000469862|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000469862|-0.0778485|-0.0755199	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332459|EF693749|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000469862|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000469862|-0.0778485|-0.0755199	chr11	128807610	128807837	-	NA	NA	NA	NA	TP53AIP1	NA	chr11:128804627-128813294	inner
CUST_2800_PI429285431	1.1945401	A	1.1323144	A	1.04407525324331	0	lncRNA	2784-1_{1..510}	"transcript_id ""ENST00000446484.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446484.1"" | genecode_v17"	chr7	 34249138	 34249647	+	ENSG00000236212.1	ENST00000446484.1	AC009262.2	AC009262.2-001	NA	NA	NA	inter
CUST_13323_PI429285431	1.9116142	A	3.2663276	A	0.391012490819628	0	lncRNA	14958-1_{1..353}	lnc-GPRIN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPRIN3-1:1	chr4	 90388905	 90389257	-	lnc-GPRIN3-1	lnc-GPRIN3-1:1	XLOC_004015	linc-GPRIN3-1	NA	NA	NA	inter
CUST_42310_PI429285431	9.735747	P	9.752653	P	0.988350046175369	0	lncRNA	44936-1_{1..128}	ENST00000408789 ncrna:snoRNA chromosome:GRCh37:X:54840803:54840930:1 gene:ENSG00000221716 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408789 ncrna:snoRNA chromosome:GRCh37:X:54840803:54840930:1 gene:ENSG00000221716 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	 54840803	 54840930	+	ENSG00000221716	ENST00000408789	NA	NA	MAGED2	NA	chrX:54834171-54842445	inner
CUST_37043_PI429285431	3.8784244	P	3.4588046	P	1.33757501109502	0	lncRNA	38181-1_{1..3000}	n345498|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1047|NULL|-1.4147500|-0.3365736	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345498|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1047|NULL|-1.4147500|-0.3365736	chr2	 54248556	 54251555	-	NA	NA	NA	NA	ACYP2	"hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_HMGB1:range=chr13:31035494-310378175'pad=0,hg19_refFlat_HMGB1:range=chr13:31035494-310378175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SP100:range=chr2:231281012-2313803555'pad=0,hg19_refFlat_SP100:range=chr2:231281012-2313803555'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30chr2:54256624-54322205"	NA	inter
LNCA_21_P0005907	0.87837726	A	2.2223969	A	0.393921580371943	0	lncRNA	TCONS_00015171	NA	NA	NA	NA	XLOC_007215	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007215), lincRNA [TCONS_00015171]"	chr8:128234276-128234217	hs|8q24.21	Agilent_HUMAN_G3V2	TCONS_00015171	TCONS_00015171	chr8	128234217	128234276	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001491	0.8776416	A	0.88014096	A	0.998269075443627	0	lncRNA	TCONS_00001454	NA	NA	NA	NA	XLOC_000783	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000783), lincRNA [TCONS_00001454]"	chr1:36127462-36127403	hs|1p34.3	Agilent_HUMAN_G3V2	TCONS_00001454	TCONS_00001454	chr1	 36127403	 36127462	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16931_PI429285431	1.2866027	A	1.607912	A	0.800343206343289	0	lncRNA	18643-1_{1..2429}	lnc-CADM1-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CADM1-2:10	chr11	115630748	115633176	-	lnc-CADM1-2	lnc-CADM1-2:10	XLOC_009562	linc-CADM1-3	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90"	NA	inter
CUST_25659_PI429285431	10.731905	P	11.346638	P	0.653050742656359	0	lncRNA	27188-1_{1..1071}	lnc-AK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AK1-1:1	chr9	130648915	130649985	-	lnc-AK1-1	lnc-AK1-1:1	ENSG00000257524.1	RP11-203J24.9	AK1	NA	chr9:130638915-130640022	inner
CUST_6560_PI429285431	1.2628804	A	1.4176835	A	0.898254958965908	0	lncRNA	6508-1_{1..495}	"transcript_id ""ENST00000563228.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563228.1"" | genecode_v17"	chr19	 51279398	 51279892	-	ENSG00000261341.1	ENST00000563228.1	CTD-2568A17.1	CTD-2568A17.1-002	ACPT	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30chr19:51293672-51298481"	NA	inter
CUST_34040_PI429285431	0.89194834	A	0.90417004	A	0.99156434461334	0	lncRNA	35572-1_{1..1108}	n340858|BC029448|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3323|NULL|-1.2250500|-0.3217423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340858|BC029448|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3323|NULL|-1.2250500|-0.3217423	chr6	 16363311	 16364418	-	NA	NA	NA	NA	ATXN1	NA	chr6:16353311-16374385	inner
CUST_7019_PI429285431	1.1804346	A	1.7571249	A	0.670500215069034	0	lncRNA	6966-1_{1..1715}	"transcript_id ""ENST00000432442.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432442.1"" | genecode_v17"	chrX	  9217960	  9219674	+	ENSG00000228543.1	ENST00000432442.1	GS1-519E5.1	GS1-519E5.1-001	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50"	NA	inter
CUST_12658_PI429285431	1.6176994	A	1.0838423	A	1.44779476014621	0	lncRNA	14274-1_{1..400}	lnc-SDIM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SDIM1-1:1	chr6	166253568	166253967	-	lnc-SDIM1-1	lnc-SDIM1-1:1	XLOC_005917	linc-PDE10A-1	NA	NA	NA	inter
CUST_31484_PI429285431	1.093157	A	1.3719062	A	0.82430537082626	0	lncRNA	33248-2_{3001..4245}	n337962|AK127075|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|347|NULL|8.7651000|-0.3408890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337962|AK127075|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|347|NULL|8.7651000|-0.3408890	chr1	 55562716	 55563960	-	NA	NA	NA	NA	USP24	NA	chr1:55549716-55623437	inner
CUST_47966_PI429285431	1.1236773	A	1.035506	A	1.06302188595121	0	lncRNA	51857-1_{1..1167}	"gi|300794861|ref|NR_034064.1| Homo sapiens caspase 12 (gene/pseudogene) (CASP12), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|300794861|ref|NR_034064.1| Homo sapiens caspase 12 (gene/pseudogene) (CASP12), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_034064.1	NA	NA	NA	NA	NA	Unknown
CUST_20356_PI429285431	2.645286	A	2.8076346	A	0.893569222148445	0	lncRNA	21997-1_{1..1655}	lnc-PPIL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPIL2-1:1	chr22	 22292609	 22294263	+	lnc-PPIL2-1	lnc-PPIL2-1:1	ENSG00000224086.3	LL22NC03-86G7.1	PPM1F	"hg19_refFlat_PPM1F:range=chr22:22277465-223004205'pad=0,hg19_refFlat_PPM1F:range=chr22:22277465-223004205'pad=0 3'pad=0 strand=- repeatMasking=none,-96.70chr22:22282609-22304263"	NA	inner
CUST_14738_PI429285431	3.8565779	P	4.175522	P	0.801656390519586	0	lncRNA	16402-1_{1..454}	lnc-FAM151A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM151A-3:1	chr1	 54879029	 54879482	-	lnc-FAM151A-3	lnc-FAM151A-3:1	XLOC_000840	linc-SSBP3-1	SSBP3	NA	chr1:54869029-54872092	inter
CUST_11681_PI429285431	4.4970665	P	6.03828	P	0.343596322367901	0	lncRNA	13259-1_{1..393}	lnc-TASP1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TASP1-4:2	chr20	 12931048	 12931440	-	lnc-TASP1-4	lnc-TASP1-4:2	XLOC_013657	linc-JAG1-7	NA	NA	NA	inter
CUST_12190_PI429285431	1.3484448	A	1.3738872	A	0.982519264471194	0	lncRNA	13790-1_{1..512}	lnc-GLRX3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLRX3-4:1	chr10	132102343	132102854	+	lnc-GLRX3-4	lnc-GLRX3-4:1	XLOC_008669	linc-PPP2R2D-3	NA	NA	NA	inter
LNCA_21_P0008084	5.7086596	P	5.622781	P	1.06133389599554	0	lncRNA	THC2741096	NA	NA	NA	NA	XLOC_010436	NA	NA	THC2741096	NA	"BROAD Institute lincRNA (XLOC_010436), lincRNA [TCONS_00021836]"	chr13:077266071-077266130	hs|13q22.3	Agilent_HUMAN_G3V2	THC2741096	THC2741096	chr13	 77266071	 77266130	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014345	5.299671	P	5.4080424	P	0.927634640233822	0	lncRNA	XR_109384	XR_109384	XR_109384	NA	NA	LOC100290566	uncharacterized LOC100290566	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100290566 (LOC100290566), miscRNA [XR_109384]"	chr17:40705166-40705012	hs|17q21.2	Agilent_HUMAN_G3V2	XR_109384	XR_109384	chr17	 40705012	 40705166	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010118	1.2632766	A	1.1045363	A	1.11631199621238	0	lncRNA	THC2663511	NA	NA	NA	NA	XLOC_013728	NA	NA	THC2663511	NA	"BROAD Institute lincRNA (XLOC_013728), lincRNA [TCONS_00028653]"	chr20:032577563-032577504	hs|20q11.22	Agilent_HUMAN_G3V2	THC2663511	THC2663511	chr20	 32577504	 32577563	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014635	4.1049356	P	3.8854964	P	1.16428092277886	0	lncRNA	XR_110841	XR_110841	XR_110841	NA	NA	LOC100506354	uncharacterized LOC100506354	NA	THC2611532	NA	"PREDICTED: Homo sapiens hypothetical LOC100506354 (LOC100506354), miscRNA [XR_110841]"	chr1:224709645-224709704	hs|1q42.12	Agilent_HUMAN_G3V2	XR_110841	XR_110841	chr1	224709645	224709704	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12434_PI429285431	0.8741473	A	0.87781525	A	0.997460800034905	0	lncRNA	14047-1_{1..496}	lnc-FUT8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FUT8-1:1	chr14	 66220444	 66220939	+	lnc-FUT8-1	lnc-FUT8-1:1	XLOC_010855	linc-GPHN-3	FUT8	NA	chr14:66210444-66210839	inter
CUST_51137_PI429285431	1.0112193	A	1.0592058	A	0.9672853809319	0	lncRNA	54765-1_{1..308}	hg19_lincRNAsTranscripts_TCONS_l2_00007729 range=chr14:53636283-53784843 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007729 range=chr14:53636283-53784843 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 53636283	 53636590	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30"	NA	inter
CUST_32601_PI429285431	2.7810433	A	2.663575	A	1.08482948824384	0	lncRNA	34262-1_{1..2037}	n339222|BC036887|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1654|NULL|-0.0935108|-0.2420518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339222|BC036887|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1654|NULL|-0.0935108|-0.2420518	chr2	242421370	242423406	-	NA	NA	NA	NA	FARP2	"hg19_refFlat_FARP2:range=chr2:242312523-2424335405'pad=0,hg19_refFlat_FARP2:range=chr2:242312523-2424335405'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60chr2:242411370-242433364"	NA	inner
CUST_23815_PI429285431	2.4534056	A	2.0436	A	1.32850678865227	0	lncRNA	25379-1_{1..579}	lnc-SYCE1L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SYCE1L-2:1	chr16	 77477742	 77478320	+	lnc-SYCE1L-2	lnc-SYCE1L-2:1	ENSG00000260701.1	RP11-449J10.1	ADAMTS18	NA	chr16:77467742-77469011	inter
CUST_5328_PI429285431	2.1409025	A	2.9435663	A	0.573289674478568	0	lncRNA	5267-1_{1..396}	"transcript_id ""ENST00000555281.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555281.1"" | genecode_v17"	chr15	 94408805	 94409200	+	ENSG00000258476.1	ENST00000555281.1	RP11-76E17.3	RP11-76E17.3-002	NA	NA	NA	inter
LNCA_21_P0011831	6.2853193	P	6.7218704	P	0.738898907206273	0	lncRNA	TCONS_l2_00013854	NA	NA	NA	NA	XLOC_l2_007456	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007456), lincRNA [TCONS_l2_00013854]"	chr2:102603720-102603779	hs|2q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00013854	TCONS_l2_00013854	chr2	102603720	102603779	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37177_PI429285431	3.4915166	P	3.950629	P	0.727433665439593	0	lncRNA	38292-1_{1..2248}	n345611|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1160|NULL|-1.3278300|-0.3500418	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345611|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1160|NULL|-1.3278300|-0.3500418	chr3	188850042	188852289	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14431_PI429285431	5.3135095	P	5.564516	P	0.840309966244608	0	lncRNA	16092-1_{1..386}	lnc-CYB5D2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CYB5D2-1:2	chr17	  4063400	  4063785	+	lnc-CYB5D2-1	lnc-CYB5D2-1:2	XLOC_012083	linc-SPNS3	ANKFY1	NA	chr17:4066665-4073653	inter
LNCA_21_P0008170	0.9052224	A	0.9268252	A	0.985137631743965	0	lncRNA	TCONS_00022033	NA	NA	NA	NA	XLOC_010631	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010631), lincRNA [TCONS_00022033]"	chr13:59395787-59395728	hs|13q21.1	Agilent_HUMAN_G3V2	TCONS_00022033	TCONS_00022033	chr13	 59395728	 59395787	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1618_PI429285431	5.729844	P	5.6774154	P	1.03700913292339	0	lncRNA	1604-1_{1..796}	"transcript_id ""ENST00000456816.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456816.1"" | genecode_v17"	chr3	194014254	194015049	-	ENSG00000214145.2	ENST00000456816.1	RP11-513G11.1	RP11-513G11.1-004	NA	NA	NA	inter
CUST_50811_PI429285431	0.8893631	A	0.89868695	A	0.993558038637766	0	lncRNA	54462-1_{1..456}	hg19_lincRNAsTranscripts_TCONS_l2_00005002 range=chr11:49436888-49438324 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005002 range=chr11:49436888-49438324 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	 49436888	 49437343	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17290_PI429285431	1.4816632	A	1.460174	A	1.0150066644091	0	lncRNA	19008-1_{1..824}	lnc-SNCA-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNCA-2:1	chr4	 90472211	 90473034	-	lnc-SNCA-2	lnc-SNCA-2:1	XLOC_004016	linc-GPRIN3-2	NA	NA	NA	inter
LNCA_21_P0013173	0.9030037	A	0.922419	A	0.986632489004346	0	lncRNA	TCONS_l2_00025671	NA	NA	NA	NA	XLOC_l2_013282	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013282), lincRNA [TCONS_l2_00025671]"	chr7:12585399-12585458	hs|7p21.3	Agilent_HUMAN_G3V2	TCONS_l2_00025671	TCONS_l2_00025671	chr7	 12585399	 12585458	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51618_PI429285431	11.329544	P	11.936926	P	0.656386740160341	0	lncRNA	55187-1_{1..569}	hg19_lincRNAsTranscripts_TCONS_l2_00011223 range=chr17:40186249-40224642 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011223 range=chr17:40186249-40224642 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 40186249	 40186817	-	NA	NA	NA	NA	ZNF385C	NA	chr17:40177594-40190044	inner
CUST_37401_PI429285431	0.90405023	A	0.9134529	A	0.993503758209003	0	lncRNA	38508-1_{1..3000}	n345856|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1405|NULL|-1.4008000|-0.1998673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345856|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1405|NULL|-1.4008000|-0.1998673	chr9	125874492	125877491	-	NA	NA	NA	NA	RABGAP1	NA	chr9:125864492-125867147	inter
LNCA_21_P0010441	0.9000712	A	0.9174409	A	0.988032429312477	0	lncRNA	TCONS_00029699	NA	NA	NA	NA	XLOC_014372	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014372), lincRNA [TCONS_00029699]"	chr22:38814039-38812947	hs|22q13.1	Agilent_HUMAN_G3V2	TCONS_00029699	TCONS_00029699	chr22	 38812947	 38814039	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25469_PI429285431	2.9048753	A	3.0614877	A	0.897129153457195	0	lncRNA	26999-1_{1..311}	lnc-KCNT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNT1-1:1	chr9	138805250	138805560	+	lnc-KCNT1-1	lnc-KCNT1-1:1	ENSG00000238058.1	RP11-432J22.2	CAMSAP1	NA	chr9:138795250-138799005	inter
CUST_17197_PI429285431	1.9855843	A	1.8045118	A	1.13372638469231	0	lncRNA	18910-1_{1..2282}	lnc-LYRM7-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYRM7-1:3	chr5	130591770	130594051	+	lnc-LYRM7-1	lnc-LYRM7-1:3	XLOC_004548	linc-CDC42SE2	CDC42SE2	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20chr5:130599702-130603098"	NA	inter
CUST_33386_PI429285431	1.3707297	A	1.2790279	A	1.06562645205628	0	lncRNA	34964-1_{1..1392}	n340104|CR594808|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2563|NULL|-0.1289430|-0.3016293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340104|CR594808|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2563|NULL|-0.1289430|-0.3016293	chr10	 94319577	 94320968	-	NA	NA	NA	NA	IDE	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90chr10:94309577-94330969"	NA	inner
CUST_27688_PI429285431	1.0453674	A	0.9403652	A	1.07549603050562	0	lncRNA	29266-1_{1..853}	n324895|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158276|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158276|-0.6809360|-0.3054705	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324895|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158276|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158276|-0.6809360|-0.3054705	chr21	 18855453	 18856305	-	NA	NA	NA	NA	CXADR	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-27.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60chr21:18872997-18965897"	NA	inner
CUST_31495_PI429285431	2.0608678	A	0.921815	A	2.20236379720814	0	lncRNA	33259-1_{1..2130}	n337976|AK092769|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|362|NULL|-1.2410500|-0.2655187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337976|AK092769|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|362|NULL|-1.2410500|-0.2655187	chr1	 61542790	 61544919	+	NA	NA	NA	NA	NFIA	NA	chr1:61542946-61554920	inner
LNCA_21_P0007128	1.6950855	A	2.3600113	A	0.630721142529006	0	lncRNA	XR_110888	XR_110888	XR_110888	NA	Hs.448669	LOC100505834	uncharacterized LOC100505834	ENST00000545202	THC2618199	NA	"PREDICTED: Homo sapiens hypothetical LOC100505834 (LOC100505834), miscRNA [XR_110888]"	chr11:69243830-69243889	hs|11q13.3	Agilent_HUMAN_G3V2	XR_110888	XR_110888	chr11	 69243830	 69243889	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46276_PI429285431	4.5780964	P	4.637879	P	0.959408681916241	0	lncRNA	50514-2_{3001..4960}	"gi|397139508|ref|XR_110291.2| PREDICTED: Homo sapiens uncharacterized LOC642477 (FLJ39632), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139508|ref|XR_110291.2| PREDICTED: Homo sapiens uncharacterized LOC642477 (FLJ39632), misc_RNA"	NA	NA	NA	NA	NA	XR_110291.2	NA	NA	NA	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40"	NA	Unknown
CUST_19507_PI429285431	4.989002	P	4.722489	P	1.2028969043585	0	lncRNA	21163-1_{1..518}	lnc-GTSF1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTSF1L-1:1	chr20	 42179245	 42179762	-	lnc-GTSF1L-1	lnc-GTSF1L-1:1	ENSG00000226143.1	RP1-138B7.5	SGK2	NA	chr20:42187635-42189589	inter
CUST_12321_PI429285431	0.8951222	A	0.8991541	A	0.997209201421683	0	lncRNA	13934-1_{1..691}	lnc-HSPH1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HSPH1-6:1	chr13	 31946932	 31947622	-	lnc-HSPH1-6	lnc-HSPH1-6:1	XLOC_010562	linc-HSPH1	NA	NA	NA	inter
LNCA_21_P0013221	0.88817286	A	0.90022343	A	0.991681969243519	0	lncRNA	CU688241	NA	CU688241	NA	NA	XLOC_l2_013457	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013457), lincRNA [TCONS_l2_00025955]"	chr7:065020252-065020193	hs|7q11.21	Agilent_HUMAN_G3V2	CU688241	CU688241	chr7	 65020193	 65020252	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15365_PI429285431	6.8133035	P	6.818009	P	0.996743709194246	0	lncRNA	17048-1_{1..245}	lnc-DPYD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DPYD-1:1	chr1	 98394580	 98394824	-	lnc-DPYD-1	lnc-DPYD-1:1	XLOC_000932	linc-DPYD-1	DPYD	NA	chr1:98384580-98386615	inter
CUST_13773_PI429285431	1.340685	A	0.8943117	A	1.36261056702415	0	lncRNA	15416-1_{1..555}	lnc-USP14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP14-1:1	chr18	   141481	   142035	+	lnc-USP14-1	lnc-USP14-1:1	XLOC_012600	linc-USP14-1	NA	NA	NA	inter
LNCA_21_P0013685	7.725632	P	7.707825	P	1.01241935945522	0	lncRNA	TCONS_l2_00029566	NA	NA	NA	NA	XLOC_l2_015351	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015351), lincRNA [TCONS_l2_00029566]"	chr9:116613134-116613075	hs|9q32	Agilent_HUMAN_G3V2	TCONS_l2_00029566	TCONS_l2_00029566	chr9	116613075	116613134	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001691	0.88403416	A	0.8935709	A	0.993411435953662	0	lncRNA	TCONS_00002078	NA	NA	NA	NA	XLOC_000266	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000266), lincRNA [TCONS_00002078]"	chr1:79869806-79871942	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_00002078	TCONS_00002078	chr1	 79869806	 79871942	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14750_PI429285431	1.1665084	A	1.4323351	A	0.831722000822712	0	lncRNA	16414-1_{1..3000}	lnc-SNTG2-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNTG2-4:3	chr2	   665302	   668301	+	lnc-SNTG2-4	lnc-SNTG2-4:3	XLOC_001309	linc-SNTG2-3	TMEM18	NA	chr2:667973-677014	inter
CUST_36599_PI429285431	0.9025763	A	1.0825897	A	0.882694797631282	0	lncRNA	37793-1_{1..677}	n345096|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_645|NULL|-1.4118900|-0.2428000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345096|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_645|NULL|-1.4118900|-0.2428000	chrX	108872097	108872773	+	NA	NA	NA	NA	ACSL4	NA	chrX:108881341-108882808	inter
CUST_29201_PI429285431	0.8906322	A	1.125963	A	0.849490194576464	0	lncRNA	30948-1_{1..682}	n326718|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001545|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001545|-1.0098700|-0.1512812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326718|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001545|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001545|-1.0098700|-0.1512812	chr1	  4531467	  4532148	+	NA	NA	NA	NA	NA	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-20.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40"	NA	inter
CUST_36983_PI429285431	0.87771976	A	0.88106674	A	0.997682739253179	0	lncRNA	38129-1_{1..3000}	n345445|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_994|NULL|-1.6472500|-0.2983984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345445|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_994|NULL|-1.6472500|-0.2983984	chr1	 65517174	 65520173	+	NA	NA	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-30.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80"	NA	inter
LNCA_21_P0001103	0.8790602	A	0.8843569	A	0.996335338650507	0	lncRNA	ENST00000418743	NA	NA	NA	NA	XLOC_000730	NA	ENST00000418743	NA	NA	"BROAD Institute lincRNA (XLOC_000730), lincRNA [TCONS_00000478]"	chr1:20725029-20724713	hs|1p36.12	Agilent_HUMAN_G3V2	ENST00000418743	ENST00000418743	chr1	 20724713	 20725029	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19352_PI429285431	3.867797	P	3.804804	P	1.04463069427219	0	lncRNA	21018-1_{1..573}	lnc-BLID-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BLID-2:7	chr11	122073472	122074044	-	lnc-BLID-2	lnc-BLID-2:7	ENSG00000255090.1	RP11-820L6.1	NA	NA	NA	inter
CUST_29903_PI429285431	2.6060123	A	1.9555107	A	1.56971386316612	0	lncRNA	31666-1_{1..320}	n334002|M18471|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194639|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194639|1.9576500|-0.2237106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334002|M18471|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194639|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194639|1.9576500|-0.2237106	chr2	 21233035	 21233354	-	NA	NA	NA	NA	APOB	NA	chr2:21224301-21243355	inner
CUST_52063_PI429285431	4.2531466	P	4.7355547	P	0.715781866335694	0	lncRNA	55593-1_{1..851}	hg19_lincRNAsTranscripts_TCONS_l2_00017590 range=chr22:18985666-19018890 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017590 range=chr22:18985666-19018890 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 18985666	 18986516	+	NA	NA	NA	NA	DGCR2	NA	chr22:19023795-19028890	inter
CUST_28554_PI429285431	9.343155	P	10.078792	P	0.600552801281654	0	lncRNA	30228-1_{1..554}	n325905|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049932|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049932|-0.8720720|-0.0982180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325905|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049932|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049932|-0.8720720|-0.0982180	chr10	102981998	102982551	+	NA	NA	NA	NA	LBX1	NA	chr10:102986733-102988717	inner
LNCA_21_P0009392	6.9078016	P	7.149088	P	0.845990636107975	0	lncRNA	TCONS_00025962	NA	NA	NA	NA	XLOC_012281	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012281), lincRNA [TCONS_00025962]"	chr17:63097384-63098635	hs|17q24.1	Agilent_HUMAN_G3V2	TCONS_00025962	TCONS_00025962	chr17	 63097384	 63098635	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9999_PI429285431	1.4642861	A	2.3113759	A	0.555904975589443	0	lncRNA	11525-1_{1..401}	lnc-GORASP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GORASP2-1:1	chr2	171829478	171829878	+	lnc-GORASP2-1	lnc-GORASP2-1:1	XLOC_001749	linc-DCAF17-3	GORASP2	NA	chr2:171819478-171823645	inter
CUST_22100_PI429285431	0.90164244	A	0.8923312	A	1.00647493207675	0	lncRNA	23705-1_{1..686}	lnc-THRSP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THRSP-2:1	chr11	 77727167	 77727852	+	lnc-THRSP-2	lnc-THRSP-2:1	ENSG00000254829.1	RP11-7I15.3	NDUFC2-KCTD14	NA	chr11:77726761-77737541	inner
CUST_45272_PI429285431	1.0884812	A	0.8866845	A	1.1501298092933	0	lncRNA	49721-2_{3001..4191}	"gi|377520145|ref|NR_046359.1| Homo sapiens family with sequence similarity 49, member B (FAM49B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|377520145|ref|NR_046359.1| Homo sapiens family with sequence similarity 49, member B (FAM49B), transcript variant 3, non-coding RNA"	Chr8	130854839	130856029	-	51571	NR_046359.1	NA	NA	NA	NA	NA	inter
CUST_15660_PI429285431	1.5515653	A	0.89257014	A	1.57898247617073	0	lncRNA	17351-3_{6001..9000}	lnc-SNURF-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNURF-1:7	chr15	 25271737	 25274736	+	lnc-SNURF-1	lnc-SNURF-1:7	XLOC_011183	linc-GABRA5-7	SNRPN	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40chr15:25255737-25291705"	NA	inter
CUST_30969_PI429285431	1.4865983	A	0.87793493	A	1.52484581316366	0	lncRNA	32757-1_{1..383}	n337103|DQ470079|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343452|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343452|1.5316600|-0.5112933	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337103|DQ470079|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343452|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343452|1.5316600|-0.5112933	chr4	187004486	187004868	+	NA	NA	NA	NA	TLR3	NA	chr4:186994486-187006252	inner
CUST_11537_PI429285431	1.3921826	A	1.7689421	A	0.770165551593796	0	lncRNA	13108-1_{1..468}	lnc-PSMG1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PSMG1-4:1	chr21	 40402249	 40402716	-	lnc-PSMG1-4	lnc-PSMG1-4:1	XLOC_014081	linc-ERG-10	NA	NA	NA	inter
LNCA_21_P0004734	0.8786186	A	0.87962383	A	0.999303470349163	0	lncRNA	ENST00000445568	NA	NA	NA	NA	XLOC_005633	NA	ENST00000445568	THC2769585	NA	"BROAD Institute lincRNA (XLOC_005633), lincRNA [TCONS_00011460]"	chr6:19730720-19730661	hs|6p22.3	Agilent_HUMAN_G3V2	ENST00000445568	ENST00000445568	chr6	 19730661	 19730720	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50680_PI429285431	0.87955415	A	0.8766706	A	1.00200072333387	0	lncRNA	54353-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00004169 range=chr10:46744225-46762776 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004169 range=chr10:46744225-46762776 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 46747225	 46750224	-	NA	NA	NA	NA	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_38247_PI429285431	0.90768	A	0.9170895	A	0.99349905477937	0	lncRNA	39306-1_{1..3000}	n381761|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001phy.2||1.5493400|-0.3296842	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381761|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001phy.2||1.5493400|-0.3296842	chr11	104772277	104775276	-	NA	NA	NA	NA	CASP12	NA	chr11:104762277-104769397	inter
CUST_38739_PI429285431	0.87810624	A	0.8814539	A	0.997682269005425	0	lncRNA	39731-1_{1..1826}	n384249|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003cpw.1||1.7017800|-0.2868612	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384249|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003cpw.1||1.7017800|-0.2868612	chr3	 46653924	 46655749	+	NA	NA	NA	NA	LOC100132146	NA	chr3:46653925-46668033	inner
CUST_30404_PI429285431	15.339037	P	14.785069	P	1.46811807177208	0	lncRNA	32184-1_{1..204}	n335533|BC070206|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264164|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264164|0.7248520|-0.1379069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335533|BC070206|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264164|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264164|0.7248520|-0.1379069	chr5	 40834310	 40834513	-	NA	NA	NA	NA	CARD6	NA	chr5:40841410-40844720	inner
LNCA_21_P0007663	3.5786507	P	3.812888	P	0.850134315218667	0	lncRNA	TCONS_00020642	NA	NA	NA	NA	XLOC_009944	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009944), lincRNA [TCONS_00020642]"	chr12:127635688-127635747	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020642	TCONS_00020642	chr12	127635688	127635747	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004917	0.8816404	A	0.88312656	A	0.998970402785447	0	lncRNA	TCONS_00011912	NA	NA	NA	NA	XLOC_005413	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005413), lincRNA [TCONS_00011912]"	chr6:107144133-107144192	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00011912	TCONS_00011912	chr6	107144133	107144192	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29293_PI429285431	2.1999733	A	1.7228262	A	1.3919883144389	0	lncRNA	31044-1_{1..418}	n332453|EU161102|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000484692|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000484692|1.6208700|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332453|EU161102|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000484692|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000484692|1.6208700|-1.0000000	chrX	152482768	152483185	-	NA	NA	NA	NA	MAGEA1	NA	chrX:152481522-152486116	inner
CUST_15114_PI429285431	1.0680532	A	0.8816916	A	1.13789039528131	0	lncRNA	16775-5_{12001..15000}	lnc-KIF13B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIF13B-1:1	chr8	 29161969	 29164968	-	lnc-KIF13B-1	lnc-KIF13B-1:1	XLOC_007035	linc-KIF13B	NA	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0,hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
LNCA_19_P00316778	4.43563	P	4.7919083	P	0.781177174325623	0	lncRNA	TCONS_00004414	NA	NA	NA	NA	XLOC_002286	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002286), lincRNA [TCONS_00004414]"	chr2:114727135-114727076	hs|2q14.1	Agilent_HUMAN_G3V2	TCONS_00004414	TCONS_00004414	chr2	114727076	114727135	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9872_PI429285431	1.4768783	A	1.771233	A	0.815436985921128	0	lncRNA	11395-1_{1..516}	lnc-SYT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYT1-2:1	chr12	 79196415	 79196930	+	lnc-SYT1-2	lnc-SYT1-2:1	XLOC_009815	linc-SYT1-1	NA	NA	NA	inter
LNCA_21_P0010277	0.8814918	A	1.9418359	A	0.479517675328836	0	lncRNA	TCONS_00029116	NA	NA	NA	NA	XLOC_014066	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014066), lincRNA [TCONS_00029116]"	chr21:37377804-37377745	hs|21q22.12	Agilent_HUMAN_G3V2	TCONS_00029116	TCONS_00029116	chr21	 37377745	 37377804	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013447	0.8811737	A	0.88414747	A	0.997940862646967	0	lncRNA	TCONS_l2_00027442	NA	NA	NA	NA	XLOC_l2_013932	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013932), lincRNA [TCONS_l2_00027442]"	chr7:97607367-97607308	hs|7q21.3	Agilent_HUMAN_G3V2	TCONS_l2_00027442	TCONS_l2_00027442	chr7	 97607308	 97607367	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19673_PI429285431	3.1014042	P	2.1475987	A	1.93697522341561	0	lncRNA	21330-1_{1..2046}	lnc-ARPC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-ARPC2-1:1	chr2	219120042	219122087	+	lnc-ARPC2-1	lnc-ARPC2-1:1	ENSG00000261338.1	RP11-378A13.1	ARPC2	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.82;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30chr2:219110042-219119071"	NA	inter
CUST_18939_PI429285431	0.9002734	A	0.9108207	A	0.99271582786298	0	lncRNA	20630-1_{1..749}	lnc-METAP1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-METAP1-3:4	chr4	100184659	100185407	+	lnc-METAP1-3	lnc-METAP1-3:4	ENSG00000246090	RP11-696N14.1	NA	NA	NA	inter
CUST_17432_PI429285431	3.4576254	P	3.6029034	P	0.904205125042046	0	lncRNA	19156-1_{1..523}	lnc-GRAMD3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRAMD3-1:4	chr5	125529293	125529815	+	lnc-GRAMD3-1	lnc-GRAMD3-1:4	XLOC_004539	linc-GRAMD3-1	NA	NA	NA	inter
CUST_3159_PI429285431	3.088374	P	3.0875983	P	1.00053781884068	0	lncRNA	3138-1_{1..399}	"transcript_id ""ENST00000523769.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523769.1"" | genecode_v17"	chr8	 65713915	 65714313	-	ENSG00000254006.1	ENST00000523769.1	RP11-1D12.2	RP11-1D12.2-002	CYP7B1	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90chr8:65703915-65711348"	NA	inter
CUST_23893_PI429285431	7.102453	P	5.8715625	P	2.34711820443089	0	lncRNA	25450-1_{1..1316}	lnc-GS1-211B7.1.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GS1-211B7.1.1-1:4	chr8	 30623743	 30625058	+	lnc-GS1-211B7.1.1-1	lnc-GS1-211B7.1.1-1:4	ENSG00000104691.10	UBXN8	UBXN8	NA	chr8:30613743-30624522	inner
CUST_25433_PI429285431	0.8932619	A	0.9192137	A	0.982172408794978	0	lncRNA	26963-1_{1..708}	lnc-DKK4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DKK4-1:1	chr8	 42393349	 42394056	-	lnc-DKK4-1	lnc-DKK4-1:1	ENSG00000254165.1	RP11-503E24.2	SLC20A2	NA	chr8:42383349-42397068	inner
CUST_15604_PI429285431	5.3340325	P	5.5607615	P	0.854570250756076	0	lncRNA	17290-1_{1..428}	lnc-UMODL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UMODL1-1:1	chr21	 43474008	 43474435	+	lnc-UMODL1-1	lnc-UMODL1-1:1	XLOC_013952	linc-UMODL1-1	UMODL1	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr21:43483068-43484407"	NA	inter
LNCA_21_P0009779	5.0931077	P	4.574352	P	1.43271901912878	0	lncRNA	THC2570509	NA	NA	NA	NA	XLOC_013429	NA	NA	THC2570509	NA	"BROAD Institute lincRNA (XLOC_013429), lincRNA [TCONS_00027440]"	chr19:058918696-058918637	hs|19q13.43	Agilent_HUMAN_G3V2	THC2570509	THC2570509	chr19	 58918637	 58918696	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50940_PI429285431	7.463498	P	8.677461	P	0.431082828109364	0	lncRNA	54582-1_{1..1062}	hg19_lincRNAsTranscripts_TCONS_00079057_HOTAIR range=chr12:54356098-54361121 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00079057_HOTAIR range=chr12:54356098-54361121 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 54356098	 54357159	-	NA	NA	NA	NA	HOXC11	NA	chr12:54366910-54370203	inter
CUST_35401_PI429285431	11.014706	P	10.671553	P	1.26852592129298	0	lncRNA	36812-1_{1..2068}	n342461|D82348|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4955|NULL|9.0512400|-0.1583471	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342461|D82348|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4955|NULL|9.0512400|-0.1583471	chr2	216176790	216178857	+	NA	NA	NA	NA	ATIC	NA	chr2:216176679-216214496	inner
CUST_14433_PI429285431	0.879906	A	0.8922412	A	0.991486339128428	0	lncRNA	16094-1_{1..417}	lnc-EFNB2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFNB2-2:1	chr13	107112458	107112874	-	lnc-EFNB2-2	lnc-EFNB2-2:1	XLOC_010714	linc-SLC10A2-3	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40"	NA	inter
CUST_36156_PI429285431	0.9010098	A	1.2984623	A	0.75919768588974	0	lncRNA	37431-1_{1..3000}	n344718|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_267|NULL|-1.6402100|-0.3419676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344718|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_267|NULL|-1.6402100|-0.3419676	chr21	 16741803	 16744802	-	NA	NA	NA	NA	LOC100652984	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-27.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00chr21:16742841-16767376"	NA	inter
CUST_11761_PI429285431	1.8960127	A	2.9045854	A	0.497037738389626	0	lncRNA	13341-1_{1..623}	lnc-WDR11-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR11-1:2	chr10	122584277	122584899	+	lnc-WDR11-1	lnc-WDR11-1:2	XLOC_008644	linc-WDR11-1	NA	NA	NA	inter
CUST_44691_PI429285431	0.8901526	A	1.6074396	A	0.608240168093019	0	lncRNA	49249-2_{3001..4066}	"gi|393250349|ref|NR_024063.2| Homo sapiens zinc finger and SCAN domain containing 12 pseudogene 1 (ZSCAN12P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|393250349|ref|NR_024063.2| Homo sapiens zinc finger and SCAN domain containing 12 pseudogene 1 (ZSCAN12P1), non-coding RNA"	Chr6	 28061585	 28062650	+	221584	NR_024063.2	NA	NA	NA	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70"	NA	inter
CUST_2222_PI429285431	0.90448296	A	1.4983256	A	0.662575774133076	0	lncRNA	2214-1_{1..483}	"transcript_id ""ENST00000505572.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505572.1"" | genecode_v17"	chr5	 84725520	 84726002	+	ENSG00000249023.1	ENST00000505572.1	CTD-2331D11.3	CTD-2331D11.3-001	NA	NA	NA	inter
CUST_36926_PI429285431	1.7687545	A	1.313135	A	1.37137155192547	0	lncRNA	38081-2_{3001..4413}	n345395|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_944|NULL|-1.4303000|-0.4142376	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345395|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_944|NULL|-1.4303000|-0.4142376	chr21	 17997100	 17998512	+	NA	NA	NA	NA	NA	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20"	NA	inter
CUST_16298_PI429285431	7.0067296	P	7.4056044	P	0.758449589624086	0	lncRNA	18004-1_{1..3000}	lnc-C22orf32-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C22orf32-1:4	chr22	 42670994	 42673993	+	lnc-C22orf32-1	lnc-C22orf32-1:4	XLOC_014255	linc-SERHL2-3	NA	NA	NA	inter
CUST_39208_PI429285431	4.5926943	P	6.0252004	P	0.37048676223299	0	lncRNA	40183-1_{1..1420}	n385994|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xtc.2||1.0482800|-0.1215744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385994|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xtc.2||1.0482800|-0.1215744	chr10	 88965544	 88966963	-	NA	NA	NA	NA	FAM22A	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70chr10:88985205-88994735"	NA	inter
CUST_6571_PI429285431	4.7030053	P	4.8718505	P	0.889554436882111	0	lncRNA	6520-1_{1..486}	"transcript_id ""ENST00000594546.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594546.1"" | genecode_v17"	chr19	 53426635	 53427120	+	ENSG00000269646.1	ENST00000594546.1	CTD-2331H12.7	CTD-2331H12.7-001	ZNF816-ZNF321P	NA	chr19:53430388-53437328	inter
CUST_39465_PI429285431	1.7683985	A	1.3441732	A	1.34185176022288	0	lncRNA	40409-1_{1..2097}	n387024|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wkn.1||0.0522884|-0.2318717	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387024|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010wkn.1||0.0522884|-0.2318717	chr17	 45129891	 45131987	-	NA	NA	NA	NA	NA	"hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0,hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0,hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0,hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0,hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30"	NA	inter
CUST_21575_PI429285431	7.073501	P	7.2065	P	0.911933797623891	0	lncRNA	23189-1_{1..674}	lnc-C1QL4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1QL4-4:1	chr12	 49666459	 49667132	-	lnc-C1QL4-4	lnc-C1QL4-4:1	ENSG00000258232.1	RP11-161H23.5	TUBA1C	"hg19_refFlat_TUBA3C:range=chr13:19748003-197558875'pad=0,hg19_refFlat_TUBA3C:range=chr13:19748003-197558875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBA1C:range=chr12:49658965-496670105'pad=0,hg19_refFlat_TUBA1C:range=chr12:49658965-496670105'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.10;hg19_refFlat_TUBA1A:range=chr12:49578793-495822025'pad=0,hg19_refFlat_TUBA1A:range=chr12:49578793-495822025'pad=0 3'pad=0 strand=- repeatMasking=none,-95.20;hg19_refFlat_TUBA4A:range=chr2:220115074-2201185805'pad=0,hg19_refFlat_TUBA4A:range=chr2:220115074-2201185805'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_TUBA1A:range=chr12:49578793-495805145'pad=0,hg19_refFlat_TUBA1A:range=chr12:49578793-495805145'pad=0 3'pad=0 strand=- repeatMasking=none,-95.20;hg19_refFlat_TUBA3E:range=chr2:130949404-1309559335'pad=0,hg19_refFlat_TUBA3E:range=chr2:130949404-1309559335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TUBA3D:range=chr2:132233773-1322404215'pad=0,hg19_refFlat_TUBA3D:range=chr2:132233773-1322404215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TUBA1A:range=chr12:49578793-495827625'pad=0,hg19_refFlat_TUBA1A:range=chr12:49578793-495827625'pad=0 3'pad=0 strand=- repeatMasking=none,-95.20;hg19_refFlat_TUBA1B:range=chr12:49521741-495250835'pad=0,hg19_refFlat_TUBA1B:range=chr12:49521741-495250835'pad=0 3'pad=0 strand=- repeatMasking=none,-95.20chr12:49658865-49667113"	NA	inner
CUST_19794_PI429285431	3.9194725	P	4.2395573	P	0.801022792982489	0	lncRNA	21452-1_{1..322}	lnc-DLAT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DLAT-1:1	chr11	111886746	111887067	+	lnc-DLAT-1	lnc-DLAT-1:1	ENSG00000255334.1	RP11-708L7.6	DIXDC1	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0,hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60chr11:111876746-111893308"	NA	inner
CUST_49268_PI429285431	6.802879	P	6.9210377	P	0.921362828448576	0	lncRNA	53088-1_{1..487}	hg19_lincRNAsTranscripts_TCONS_l2_00022555 range=chr5:141770495-141906923 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022555 range=chr5:141770495-141906923 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	141770495	141770981	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33706_PI429285431	6.7460623	P	5.252871	P	2.81511000683197	0	lncRNA	35266-1_{1..2759}	n340484|AK090594|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2945|NULL|-1.0605600|-0.4840886	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340484|AK090594|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2945|NULL|-1.0605600|-0.4840886	chr5	 64961756	 64964514	-	NA	NA	NA	NA	SGTB	NA	chr5:64961755-64975240	inner
CUST_48989_PI429285431	9.251794	P	8.996065	P	1.19393889308193	0	lncRNA	52823-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00019107 range=chr3:196181573-196192929 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019107 range=chr3:196181573-196192929 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	196181573	196184572	+	NA	NA	NA	NA	RNF168	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10chr3:196195654-196202929"	NA	inter
LNCA_21_P0008751	4.736973	P	5.231663	P	0.709714161991889	0	lncRNA	TCONS_00023714	NA	NA	NA	NA	XLOC_011515	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011515), lincRNA [TCONS_00023714]"	chr15:68777431-68777372	hs|15q23	Agilent_HUMAN_G3V2	TCONS_00023714	TCONS_00023714	chr15	 68777372	 68777431	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21848_PI429285431	0.90231174	A	0.91157264	A	0.993601392112548	0	lncRNA	23458-1_{1..553}	lnc-OAZ3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OAZ3-1:1	chr1	151763911	151764463	+	lnc-OAZ3-1	lnc-OAZ3-1:1	ENSG00000203288.3	RP11-98D18.9	TDRKH	NA	chr1:151753911-151763010	inter
CUST_16019_PI429285431	2.3456702	A	2.6651478	A	0.801359997585158	0	lncRNA	17714-1_{1..466}	lnc-GPR27-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR27-1:5	chr3	 71835368	 71835833	+	lnc-GPR27-1	lnc-GPR27-1:5	XLOC_002701	linc-GXYLT2-3	PROK2	NA	chr3:71825368-71834357	inter
CUST_48339_PI429285431	1.8127223	A	1.1620115	A	1.5699414982109	0	lncRNA	52194-1_{1..629}	hg19_lincRNAsTranscripts_TCONS_l2_00001232 range=chr1:52016846-52032193 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001232 range=chr1:52016846-52032193 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 52016846	 52017474	-	NA	NA	NA	NA	OSBPL9	NA	chr1:52020400-52042193	inter
CUST_47029_PI429285431	1.9229803	A	1.5216446	A	1.32073012530644	0	lncRNA	51119-1_{1..1653}	"gi|289547699|ref|NR_033342.1| Homo sapiens CUGBP, Elav-like family member 5 (CELF5), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|289547699|ref|NR_033342.1| Homo sapiens CUGBP, Elav-like family member 5 (CELF5), transcript variant 3, non-coding RNA"	Chr19	  3225483	  3227135	+	60680	NR_033342.1	NA	NA	NA	NA	NA	inter
CUST_3962_PI429285431	3.6181571	P	4.054286	P	0.739115175205904	0	lncRNA	3932-1_{1..1831}	"transcript_id ""ENST00000540906.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000540906.1"" | genecode_v17"	chr11	 61306988	 61308818	-	ENSG00000256443.1	ENST00000540906.1	RP11-794G24.1	RP11-794G24.1-001	SYT7	NA	chr11:61296988-61319731	inner
CUST_9968_PI429285431	3.636647	P	4.073423	P	0.738783730119279	0	lncRNA	11492-1_{1..533}	lnc-TOP1MT-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TOP1MT-2:1	chr8	144363652	144364184	-	lnc-TOP1MT-2	lnc-TOP1MT-2:1	XLOC_007249	linc-LY6H	ZNF696	NA	chr8:144373559-144373898	inter
CUST_7899_PI429285431	0.89004225	A	1.0752517	A	0.879521378023542	0	lncRNA	9514-1_{1..1276}	lnc-WRNIP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WRNIP1-3:1	chr6	  2245771	  2247046	+	lnc-WRNIP1-3	lnc-WRNIP1-3:1	ENSG00000246005	AL158139.1	GMDS	NA	chr6:2235771-2245846	inner
CUST_35128_PI429285431	0.90069306	A	0.9038179	A	0.997836369993387	0	lncRNA	36531-1_{1..357}	n342095|AL049965|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4577|NULL|-1.2861200|-0.4304531	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342095|AL049965|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4577|NULL|-1.2861200|-0.4304531	chr6	100832890	100833246	-	NA	NA	NA	NA	SIM1	NA	chr6:100836750-100843225	inter
LNCA_21_P0014518	3.9507368	P	1.2819562	A	6.35891489258986	0	lncRNA	XR_110188	XR_110188	XR_110188	NA	NA	LOC100507624	uncharacterized LOC100507624	NA	THC2728927	NA	"PREDICTED: Homo sapiens hypothetical LOC100507624 (LOC100507624), miscRNA [XR_110188]"	chr6:150146078-150146019	hs|6q25.1	Agilent_HUMAN_G3V2	XR_110188	XR_110188	chr6	150146019	150146078	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41372_PI429285431	0.89839315	A	1.0142423	A	0.92283898080865	0	lncRNA	42460-1_{1..75}	ENST00000401373 ncrna:miRNA chromosome:GRCh37:12:24365355:24365429:1 gene:ENSG00000216192 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401373 ncrna:miRNA chromosome:GRCh37:12:24365355:24365429:1 gene:ENSG00000216192 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 24365355	 24365429	+	ENSG00000216192	ENST00000401373	NA	NA	SOX5	NA	chr12:24355355-24375429	inner
CUST_3937_PI429285431	0.8774853	A	0.880371	A	0.998001784277623	0	lncRNA	3907-1_{1..564}	"transcript_id ""ENST00000525926.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525926.1"" | genecode_v17"	chr11	 45604075	 45604638	+	ENSG00000254514.1	ENST00000525926.1	RP11-958J22.3	RP11-958J22.3-001	NA	NA	NA	inter
CUST_15406_PI429285431	2.5250933	A	0.90452707	A	3.07495698712912	0	lncRNA	17091-1_{1..1573}	lnc-C17orf77-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C17orf77-1:5	chr17	 72602925	 72604497	+	lnc-C17orf77-1	lnc-C17orf77-1:5	XLOC_012307	linc-RAB37	CD300E	NA	chr17:72606022-72613250	inter
LNCA_21_P0006098	0.8775147	A	0.8995671	A	0.984830672297503	0	lncRNA	ENST00000446206	NA	NA	NA	NA	XLOC_007819	NA	ENST00000446206	THC2744020	NA	"BROAD Institute lincRNA (XLOC_007819), lincRNA [TCONS_00016852]"	chr9:109377705-109377646	hs|9q31.2	Agilent_HUMAN_G3V2	ENST00000446206	ENST00000446206	chr9	109377646	109377705	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43630_PI429285431	9.0727625	P	8.956798	P	1.08369930022613	0	lncRNA	48389-1_{1..2589}	"gi|374717333|ref|NR_046292.1| Homo sapiens misato homolog 1 (Drosophila) (MSTO1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374717333|ref|NR_046292.1| Homo sapiens misato homolog 1 (Drosophila) (MSTO1), transcript variant 4, non-coding RNA"	Chr1	155579961	155582549	+	55154	NR_046292.1	NA	NA	NA	"hg19_refFlat_GON4L:range=chr1:155720375-1558235715'pad=0,hg19_refFlat_GON4L:range=chr1:155720375-1558235715'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20"	NA	inter
CUST_25722_PI429285431	0.87835157	A	0.876873	A	1.00102539198202	0	lncRNA	27250-1_{1..289}	lnc-NIPSNAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NIPSNAP1-1:1	chr22	 29931219	 29931507	-	lnc-NIPSNAP1-1	lnc-NIPSNAP1-1:1	ENSG00000234208.1	CTA-256D12.11	THOC5	NA	chr22:29921219-29941379	inner
CUST_7489_PI429285431	0.8780065	A	0.88335115	A	0.996302224593675	0	lncRNA	9128-2_{3001..4358}	lnc-UGDH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UGDH-1:1	chr4	 39606374	 39607731	-	lnc-UGDH-1	lnc-UGDH-1:1	ENSG00000248948	ENST00000505439	C4orf34	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10chr4:39593374-39614927"	NA	inner
LNCA_21_P0003737	0.8782412	A	0.8793334	A	0.999243231143493	0	lncRNA	TCONS_00008462	NA	NA	NA	NA	XLOC_003922	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003922), lincRNA [TCONS_00008462]"	chr4:34841093-34841034	hs|4p15.1	Agilent_HUMAN_G3V2	TCONS_00008462	TCONS_00008462	chr4	 34841034	 34841093	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45956_PI429285431	0.8854165	A	0.8881712	A	0.998092409230145	0	lncRNA	50249-1_{1..2352}	"gi|303324584|ref|NR_036546.1| Homo sapiens uncharacterized LOC100271702 (LOC100271702), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|303324584|ref|NR_036546.1| Homo sapiens uncharacterized LOC100271702 (LOC100271702), non-coding RNA"	Chr12	  2038368	  2040719	-	100271702	NR_036546.1	NA	NA	NA	NA	NA	inter
CUST_28553_PI429285431	1.0736951	A	0.9692886	A	1.07505204150171	0	lncRNA	30227-1_{1..2553}	n325904|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049931|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049931|-0.8622520|-0.1537812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325904|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049931|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049931|-0.8622520|-0.1537812	chr10	102985814	102988366	+	NA	NA	NA	NA	LBX1	"hg19_refFlat_LBX1:range=chr10:102987027-1029885725'pad=0,hg19_refFlat_LBX1:range=chr10:102987027-1029885725'pad=0 3'pad=0 strand=- repeatMasking=none,-109.60chr10:102986733-102988717"	NA	inner
CUST_33522_PI429285431	0.8923929	A	0.90466624	A	0.991528853074999	0	lncRNA	35090-1_{1..3000}	n340258|AL137273|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2719|NULL|3.6577000|-0.2799367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n340258|AL137273|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2719|NULL|3.6577000|-0.2799367	chr4	153457415	153460414	+	NA	NA	NA	NA	FBXW7	NA	chr4:153447415-153456172	inter
CUST_33883_PI429285431	9.359103	P	9.371423	P	0.991496785322058	0	lncRNA	35427-1_{1..397}	n340673|AF103884|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3136|NULL|-0.0681111|-0.2270345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340673|AF103884|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3136|NULL|-0.0681111|-0.2270345	chr5	143191725	143192121	+	NA	NA	NA	NA	HMHB1	NA	chr5:143191726-143200284	inner
CUST_48683_PI429285431	3.7139268	P	3.927182	P	0.862588746722027	0	lncRNA	52524-1_{1..575}	hg19_lincRNAsTranscripts_TCONS_l2_00014743 range=chr2:103509092-103512125 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014743 range=chr2:103509092-103512125 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	103509092	103509666	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43909_PI429285431	4.366662	P	3.7713308	P	1.51081938508314	0	lncRNA	48623-1_{1..1690}	"gi|325651944|ref|NR_037935.1| Homo sapiens lipoyltransferase 1 (LIPT1), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|325651944|ref|NR_037935.1| Homo sapiens lipoyltransferase 1 (LIPT1), transcript variant 7, non-coding RNA"	Chr2	 99771537	 99773226	+	51601	NR_037935.1	NA	NA	NA	NA	NA	inter
CUST_23431_PI429285431	1.205939	A	0.8827961	A	1.25105299169112	0	lncRNA	24999-1_{1..930}	lnc-C10orf103-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C10orf103-2:1	chr10	 75255900	 75256829	+	lnc-C10orf103-2	lnc-C10orf103-2:1	ENSG00000221817.2	RP11-137L10.6	PPP3CB	NA	chr10:75245900-75255782	inter
CUST_34229_PI429285431	2.6435232	A	1.1579163	A	2.80034950933977	0	lncRNA	35739-1_{1..2358}	n341089|AK091677|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3555|NULL|-1.2844300|-0.3647149	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341089|AK091677|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3555|NULL|-1.2844300|-0.3647149	chr11	 86145965	 86148322	-	NA	NA	NA	NA	ME3	NA	chr11:86152150-86158324	inter
CUST_21409_PI429285431	0.88157296	A	0.88806677	A	0.995508948973283	0	lncRNA	23030-1_{1..392}	lnc-AP1S2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP1S2-2:3	chrX	 16175876	 16176267	-	lnc-AP1S2-2	lnc-AP1S2-2:3	ENSG00000238178.1	RP11-431J24.2	MAGEB17	NA	chrX:16185604-16185952	inter
LNCA_21_P0008550	7.9029903	P	8.280347	P	0.769846809467835	0	lncRNA	TCONS_00023171	NA	NA	NA	NA	XLOC_011119	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011119), lincRNA [TCONS_00023171]"	chr14:99751043-99750984	hs|14q32.2	Agilent_HUMAN_G3V2	TCONS_00023171	TCONS_00023171	chr14	 99750984	 99751043	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24854_PI429285431	0.8792924	A	0.91815734	A	0.973420498072198	0	lncRNA	26394-1_{1..565}	lnc-STOML1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STOML1-1:5	chr15	 74220118	 74220682	-	lnc-STOML1-1	lnc-STOML1-1:5	ENSG00000261801.1	RP11-941F15.1	LOXL1	"hg19_refFlat_LOXL1:range=chr15:74219125-742441785'pad=0,hg19_refFlat_LOXL1:range=chr15:74219125-742441785'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.60chr15:74218789-74230283"	NA	inner
CUST_47045_PI429285431	10.991743	P	11.171199	P	0.883035901694048	0	lncRNA	51134-1_{1..1191}	"gi|336285454|ref|NR_038422.2| Homo sapiens peptidylprolyl cis/trans isomerase, NIMA-interacting 1 (PIN1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336285454|ref|NR_038422.2| Homo sapiens peptidylprolyl cis/trans isomerase, NIMA-interacting 1 (PIN1), transcript variant 2, non-coding RNA"	Chr19	  9945883	  9947073	+	5300	NR_038422.2	NA	NA	NA	NA	NA	inter
CUST_29048_PI429285431	1.2854689	A	0.912093	A	1.29538047148356	0	lncRNA	30777-1_{1..889}	n326538|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000028275|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000028275|-0.9646120|-0.2865130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326538|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000028275|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000028275|-0.9646120|-0.2865130	chr1	 87591794	 87592682	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38360_PI429285431	0.8892768	A	0.9643125	A	0.949318629433995	0	lncRNA	39402-1_{1..2221}	n382143|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001wlf.2||3.4907800|-0.2570126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382143|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001wlf.2||3.4907800|-0.2570126	chr14	 24439147	 24441367	+	NA	NA	NA	NA	DHRS4	NA	chr14:24429147-24438488	inner
CUST_50278_PI429285431	13.19356	P	13.036615	P	1.11492371357492	0	lncRNA	54001-1_{1..235}	hg19_lincRNAsTranscripts_TCONS_l2_00029401 range=chr9:74622745-74623032 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029401 range=chr9:74622745-74623032 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 74622745	 74622979	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17563_PI429285431	1.182204	A	0.9052049	A	1.21167190454974	0	lncRNA	19292-1_{1..352}	lnc-RIOK1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RIOK1-1:2	chr6	  7452798	  7453149	+	lnc-RIOK1-1	lnc-RIOK1-1:2	XLOC_005155	linc-DSP	NA	NA	NA	inter
CUST_32785_PI429285431	0.8878145	A	1.0670308	A	0.883182627983594	0	lncRNA	34420-1_{1..2830}	n339427|AK098102|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1859|NULL|-0.7990970|-0.3834770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339427|AK098102|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1859|NULL|-0.7990970|-0.3834770	chr3	112521423	112524252	+	NA	NA	NA	NA	CD200R1L	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CD200R1L:range=chr3:112534810-1125645715'pad=0,hg19_refFlat_CD200R1L:range=chr3:112534810-1125645715'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CD200R1L:range=chr3:112534810-1125482145'pad=0,hg19_refFlat_CD200R1L:range=chr3:112534810-1125482145'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60chr3:112534556-112552106"	NA	inner
CUST_43184_PI429285431	6.7880363	P	7.087557	P	0.812522292099598	0	lncRNA	47998-1_{1..1224}	ENST00000588369 havana:sense_intronic chromosome:GRCh37:19:37582243:37583466:1 gene:ENSG00000267672 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000588369 havana:sense_intronic chromosome:GRCh37:19:37582243:37583466:1 gene:ENSG00000267672 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 37582243	 37583466	+	ENSG00000267672	ENST00000588369	NA	NA	ZNF420	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-22.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10chr19:37572243-37593466"	NA	inner
CUST_182_PI429285431	0.9022106	A	0.92654586	A	0.983273549918925	0	lncRNA	172-1_{1..400}	"transcript_id ""ENST00000604481.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604481.1"" | genecode_v17"	chr1	 23610849	 23611248	-	ENSG00000261326.2	ENST00000604481.1	RP5-1057J7.6	RP5-1057J7.6-002	NA	NA	NA	inter
CUST_21364_PI429285431	7.759889	P	8.481647	P	0.606358112491412	0	lncRNA	22987-1_{1..428}	lnc-CAV3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CAV3-1:1	chr3	  9057405	  9057832	+	lnc-CAV3-1	lnc-CAV3-1:1	ENSG00000224808.1	SRGAP3-AS1	SRGAP3	NA	chr3:9047405-9067663	inner
LNCA_21_P0003519	0.9041467	A	0.9283333	A	0.983374874851181	0	lncRNA	BC042982	NA	BC042982	NA	Hs.557756	XLOC_004107	NA	NA	THC2606035	NA	"BROAD Institute lincRNA (XLOC_004107), lincRNA [TCONS_00007864]"	chr4:144739581-144739522	hs|4q31.21	Agilent_HUMAN_G3V2	BC042982	BC042982	chr4	144739522	144739581	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013803	7.500704	P	7.759553	P	0.835754428768965	0	lncRNA	TCONS_l2_00030417	NA	NA	NA	NA	XLOC_l2_015659	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015659), lincRNA [TCONS_l2_00030417]"	chrX:281555-281496	hs|Xp22.33	Agilent_HUMAN_G3V2	TCONS_l2_00030417	TCONS_l2_00030417	chrX	   281496	   281555	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47545_PI429285431	11.49061	P	11.136412	P	1.27827478561261	0	lncRNA	51554-1_{1..1448}	"gi|224028287|ref|NR_026982.1| Homo sapiens ribosomal protein L23a pseudogene 82 (RPL23AP82), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224028287|ref|NR_026982.1| Homo sapiens ribosomal protein L23a pseudogene 82 (RPL23AP82), transcript variant 2, non-coding RNA"	NW_004070876.1	    18804	    20251	+	284942	NR_026982.1	NA	NA	NA	"hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90"	NA	Unknown
CUST_4509_PI429285431	4.7285986	P	4.95728	P	0.853414542547826	0	lncRNA	4458-1_{1..546}	"transcript_id ""ENST00000536341.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536341.1"" | genecode_v17"	chr12	128596774	128597319	-	ENSG00000256551.1	ENST00000536341.1	RP13-653N12.1	RP13-653N12.1-002	NA	NA	NA	inter
CUST_12918_PI429285431	4.393166	P	4.778184	P	0.765769444250826	0	lncRNA	14546-1_{1..940}	lnc-AC006156.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-AC006156.1-4:1	chrY	  9611654	  9612593	-	lnc-AC006156.1-4	lnc-AC006156.1-4:1	XLOC_008321	linc-AMELY-8	NA	NA	NA	inter
CUST_6810_PI429285431	0.9310354	A	0.99540776	A	0.956361289114294	0	lncRNA	6758-1_{1..861}	"transcript_id ""ENST00000433101.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433101.1"" | genecode_v17"	chr21	 24849960	 24850820	+	ENSG00000227716.1	ENST00000433101.1	AP000459.7	AP000459.7-001	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-19.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20"	NA	inter
CUST_45134_PI429285431	0.90359855	A	0.92338705	A	0.986377297426319	0	lncRNA	49614-1_{1..291}	"gi|261278291|ref|NR_029386.1| Homo sapiens defensin, alpha 10 pseudogene (DEFA10P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|261278291|ref|NR_029386.1| Homo sapiens defensin, alpha 10 pseudogene (DEFA10P), non-coding RNA"	Chr8	  6825663	  6825953	-	449493	NR_029386.1	NA	NA	NA	NA	NA	inter
CUST_9395_PI429285431	2.6003356	A	2.315674	A	1.2181245056533	0	lncRNA	10899-1_{1..385}	lnc-AGGF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AGGF1-1:1	chr5	 76370318	 76370702	+	lnc-AGGF1-1	lnc-AGGF1-1:1	XLOC_004435	linc-PDE8B-2	AGGF1	NA	chr5:76360318-76361059	inter
CUST_45096_PI429285431	0.89591813	A	0.90178466	A	0.995941887753059	0	lncRNA	49580-2_{3001..5034}	"gi|299829233|ref|NR_033897.1| Homo sapiens EPHA1 antisense RNA 1 (EPHA1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299829233|ref|NR_033897.1| Homo sapiens EPHA1 antisense RNA 1 (EPHA1-AS1), non-coding RNA"	Chr7	143107906	143109939	+	285965	NR_033897.1	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_30030_PI429285431	6.1051226	P	7.1749606	P	0.476372487810774	0	lncRNA	31798-1_{1..209}	n334500|U30271|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219027|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219027|-1.1507300|-0.1665813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334500|U30271|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219027|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219027|-1.1507300|-0.1665813	chr14	 96722559	 96722767	+	NA	NA	NA	NA	BDKRB1	NA	chr14:96722559-96731100	inner
LNCA_21_P0014577	4.7221236	P	5.023117	P	0.811693294280046	0	lncRNA	XR_110368	XR_110368	XR_110368	NA	NA	LOC100506869	uncharacterized LOC100506869	ENST00000546977	THC2688448	NA	"PREDICTED: Homo sapiens hypothetical LOC100506869, transcript variant 2 (LOC100506869), miscRNA [XR_110368]"	chr12:59206392-59206451	hs|12q14.1	Agilent_HUMAN_G3V2	XR_110368	XR_110368	chr12	 59206392	 59206451	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005351	6.8246794	P	7.2302213	P	0.754952666871425	0	lncRNA	TCONS_00013319	NA	NA	NA	NA	XLOC_005968	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005968), lincRNA [TCONS_00013319]"	chr7:2483442-2483501	hs|7p22.3	Agilent_HUMAN_G3V2	TCONS_00013319	TCONS_00013319	chr7	  2483442	  2483501	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38010_PI429285431	13.229355	P	12.893017	P	1.2625477918924	0	lncRNA	39095-2_{3001..5671}	n377583|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029948||0.3538940|-0.2939802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377583|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029948||0.3538940|-0.2939802	chr6	  2539689	  2542359	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30"	NA	inter
CUST_47902_PI429285431	5.049386	P	5.4834595	P	0.740168939157465	0	lncRNA	51796-1_{1..3000}	"gi|410171874|ref|XR_171443.1| PREDICTED: Homo sapiens uncharacterized LOC101060650 (LOC101060650), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171874|ref|XR_171443.1| PREDICTED: Homo sapiens uncharacterized LOC101060650 (LOC101060650), misc_RNA"	NA	NA	NA	NA	NA	XR_171443.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20"	NA	Unknown
CUST_4296_PI429285431	0.8957951	A	0.8978972	A	0.998543996315118	0	lncRNA	4251-1_{1..443}	"transcript_id ""ENST00000545750.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000545750.1"" | genecode_v17"	chr12	 65953371	 65953813	+	ENSG00000255866.1	ENST00000545750.1	RP11-221N13.2	RP11-221N13.2-001	NA	NA	NA	inter
CUST_24292_PI429285431	4.8271713	P	5.2617817	P	0.739893536001836	0	lncRNA	25843-1_{1..821}	lnc-SPARCL1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPARCL1-1:2	chr4	 88653467	 88654287	-	lnc-SPARCL1-1	lnc-SPARCL1-1:2	ENSG00000249001.1	RP11-742B18.1	NA	NA	NA	inter
LNCA_21_P0005015	0.8847278	A	0.89488655	A	0.99298322441604	0	lncRNA	TCONS_00012127	NA	NA	NA	NA	XLOC_005657	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005657), lincRNA [TCONS_00012127]"	chr6:27031447-27031388	hs|6p22.1	Agilent_HUMAN_G3V2	TCONS_00012127	TCONS_00012127	chr6	 27031388	 27031447	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6648_PI429285431	2.9564939	A	3.3565922	P	0.757806647303597	0	lncRNA	6594-1_{1..473}	"transcript_id ""ENST00000442389.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442389.1"" | genecode_v17"	chr20	 12286261	 12286733	-	ENSG00000230437.1	ENST00000442389.1	RP11-102J14.1	RP11-102J14.1-001	NA	NA	NA	inter
CUST_9821_PI429285431	9.738089	P	9.789429	P	0.96503956715559	0	lncRNA	11339-1_{1..414}	lnc-RIT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RIT2-1:1	chr18	 39805927	 39806340	-	lnc-RIT2-1	lnc-RIT2-1:1	XLOC_012829	linc-CELF4-1	NA	NA	NA	inter
CUST_44507_PI429285431	0.89005536	A	0.90704906	A	0.988289967182857	0	lncRNA	49106-1_{1..1120}	"gi|336391099|ref|NR_038848.1| Homo sapiens uncharacterized LOC643401 (LOC643401), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336391099|ref|NR_038848.1| Homo sapiens uncharacterized LOC643401 (LOC643401), non-coding RNA"	Chr5	 27472399	 27473518	+	643401	NR_038848.1	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90"	NA	inter
CUST_1977_PI429285431	0.8979836	A	0.8941729	A	1.00264486746789	0	lncRNA	1968-1_{1..548}	"transcript_id ""ENST00000515825.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515825.1"" | genecode_v17"	chr4	174798622	174799169	-	ENSG00000250043.1	ENST00000515825.1	RP11-161D15.2	RP11-161D15.2-002	NA	NA	NA	inter
CUST_37002_PI429285431	2.8424983	A	2.3302157	A	1.42630507948079	0	lncRNA	38143-1_{1..593}	n345459|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1008|NULL|-1.4890600|-0.2378285	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345459|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1008|NULL|-1.4890600|-0.2378285	chr1	119561112	119561704	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003293	6.9028306	P	7.079426	P	0.884788537140059	0	lncRNA	TCONS_00007229	NA	NA	NA	NA	XLOC_003211	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003211), lincRNA [TCONS_00007229]"	chr3:108462221-108462162	hs|3q13.13	Agilent_HUMAN_G3V2	TCONS_00007229	TCONS_00007229	chr3	108462162	108462221	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26013_PI429285431	0.8978243	A	0.89890385	A	0.999251992858154	0	lncRNA	27532-1_{1..590}	lnc-DAPP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DAPP1-1:1	chr4	100887184	100887773	+	lnc-DAPP1-1	lnc-DAPP1-1:1	ENSG00000245322.2	RP11-15B17.1	NA	NA	NA	inter
CUST_9219_PI429285431	0.87944466	A	0.881647	A	0.998474618816677	0	lncRNA	10729-1_{1..1954}	lnc-ZNHIT2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNHIT2-2:1	chr11	 64872605	 64874558	-	lnc-ZNHIT2-2	lnc-ZNHIT2-2:1	ENSG00000250832	ENST00000510665	TM7SF2	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00chr11:64879341-64883707"	NA	inter
CUST_23626_PI429285431	0.91049993	A	0.89663076	A	1.00965973301184	0	lncRNA	25192-2_{3001..3210}	lnc-HERC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-HERC3-1:1	chr4	 89651986	 89652195	+	lnc-HERC3-1	lnc-HERC3-1:1	ENSG00000248019.2	FAM13A-AS1	FAM13A	"hg19_refFlat_FAM13A:range=chr4:89649684-897441555'pad=0,hg19_refFlat_FAM13A:range=chr4:89649684-897441555'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_FAM13A:range=chr4:89649684-899781155'pad=0,hg19_refFlat_FAM13A:range=chr4:89649684-899781155'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr4:89647106-89661254"	NA	inner
LNCA_21_P0002128	0.87746704	A	0.8800945	A	0.9981804409174	0	lncRNA	XR_108412	XR_108412	XR_108412	NA	Hs.615684	LOC100506993	uncharacterized LOC100506993	ENST00000422017	THC2632371	NA	"PREDICTED: Homo sapiens hypothetical LOC100506993 (LOC100506993), miscRNA [XR_108412]"	chr2:193509006-193508947	hs|2q32.3	Agilent_HUMAN_G3V2	XR_108412	XR_108412	chr2	193508947	193509006	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30228_PI429285431	7.546223	P	7.6975274	P	0.900435973214185	0	lncRNA	32003-1_{1..257}	n335091|AJ844627|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249431|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249431|1.3433800|-0.2157790	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335091|AJ844627|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249431|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249431|1.3433800|-0.2157790	chr20	 62701596	 62701852	+	NA	NA	NA	NA	OPRL1	NA	chr20:62711471-62711928	inner
LNCA_21_P0010991	3.4901748	P	4.451195	P	0.513693527121684	0	lncRNA	BC038205	NA	BC038205	NA	NA	XLOC_l2_002433	NA	NA	THC2690892	NA	"BROAD Institute lincRNA (XLOC_l2_002433), lincRNA [TCONS_l2_00005330]"	chr11:88161178-88161237	hs|11q14.2	Agilent_HUMAN_G3V2	BC038205	BC038205	chr11	 88161178	 88161237	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49321_PI429285431	0.8740609	A	0.87603724	A	0.998631043378328	0	lncRNA	53137-1_{1..1296}	hg19_lincRNAsTranscripts_TCONS_l2_00022887 range=chr5:44775148-44808844 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022887 range=chr5:44775148-44808844 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 44775148	 44776443	-	NA	NA	NA	NA	MRPS30	NA	chr5:44809027-44815616	inter
CUST_40688_PI429285431	1.1521316	A	0.8873367	A	1.20146523169703	0	lncRNA	41423-1_{1..548}	n410246|NR_037172_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037172_7||-1.0315000|-0.3998294	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410246|NR_037172_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037172_7||-1.0315000|-0.3998294	chr6	  3500401	  3500948	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
CUST_45094_PI429285431	1.2157433	A	0.88313836	A	1.2592850967407	0	lncRNA	49578-1_{1..2946}	"gi|380503844|ref|NR_046453.1| Homo sapiens chloride channel, voltage-sensitive 1 (CLCN1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|380503844|ref|NR_046453.1| Homo sapiens chloride channel, voltage-sensitive 1 (CLCN1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_046453.1	NA	NA	NA	NA	NA	Unknown
CUST_333_PI429285431	9.991987	P	9.9185095	P	1.05224999294051	0	lncRNA	326-1_{1..968}	"transcript_id ""ENST00000602984.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602984.1"" | genecode_v17"	chr1	 98510057	 98511024	-	ENSG00000225206.3	ENST00000602984.1	MIR137HG	MIR137HG-003	NA	NA	NA	inter
LNCA_21_P0012902	1.386714	A	1.823057	A	0.739005496574496	0	lncRNA	TCONS_l2_00022859	NA	NA	NA	NA	XLOC_l2_012010	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012010), lincRNA [TCONS_l2_00022859]"	chr5:38825950-38825891	hs|5p13.1	Agilent_HUMAN_G3V2	TCONS_l2_00022859	TCONS_l2_00022859	chr5	 38825891	 38825950	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30673_PI429285431	0.88656944	A	0.8783985	A	1.00567973289051	0	lncRNA	32455-1_{1..239}	n336141|X92030|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324508|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324508|-0.9889250|-0.1482570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336141|X92030|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324508|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324508|-0.9889250|-0.1482570	chr14	 22466241	 22466479	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14591_PI429285431	1.6214687	A	2.237961	A	0.652254862791939	0	lncRNA	16258-1_{1..574}	lnc-ARHGAP25-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGAP25-1:2	chr2	 69064514	 69065087	+	lnc-ARHGAP25-1	lnc-ARHGAP25-1:2	XLOC_001517	linc-GKN1	NA	NA	NA	inter
CUST_25099_PI429285431	1.5991881	A	1.4545089	A	1.10548480860009	0	lncRNA	26636-1_{1..499}	lnc-GXYLT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GXYLT1-1:1	chr12	 42325924	 42326422	-	lnc-GXYLT1-1	lnc-GXYLT1-1:1	ENSG00000257239.1	RP11-630C16.2	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90"	NA	inter
CUST_49299_PI429285431	0.8731933	A	0.876423	A	0.997763846475707	0	lncRNA	53116-1_{1..1416}	hg19_lincRNAsTranscripts_TCONS_l2_00022781 range=chr5:7301311-7307305 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022781 range=chr5:7301311-7307305 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	  7301311	  7302726	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20"	NA	inter
CUST_4939_PI429285431	0.88304025	A	0.88276446	A	1.00019118133375	0	lncRNA	4883-1_{1..426}	"transcript_id ""ENST00000557631.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557631.1"" | genecode_v17"	chr14	 88484949	 88485374	-	ENSG00000258826.1	ENST00000557631.1	RP11-300J18.1	RP11-300J18.1-002	GPR65	NA	chr14:88474949-88481155	inter
LNCA_21_P0014546	1.968654	A	0.88278455	A	2.12265432944483	0	lncRNA	XR_110262	XR_110262	XR_110262	NA	NA	LOC100288273	uncharacterized LOC100288273	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100288273 (LOC100288273), miscRNA [XR_110262]"	chr14:106320755-106321224	hs|14q32.33	Agilent_HUMAN_G3V2	XR_110262	XR_110262	chr14	106320755	106321224	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5446_PI429285431	1.3213878	A	1.849659	A	0.693385128726601	0	lncRNA	5380-1_{1..841}	"transcript_id ""ENST00000568032.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568032.1"" | genecode_v17"	chr16	 19098178	 19099018	+	ENSG00000260430.1	ENST00000568032.1	RP11-626G11.4	RP11-626G11.4-001	COQ7	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80chr16:19088178-19091417"	NA	inter
CUST_40335_PI429285431	10.953924	P	10.174207	P	1.71679407239833	0	lncRNA	41140-1_{1..2386}	n408889|NR_030724|lncRNA|Homosapiens||RefGeneNoncode|NR_030724||9.3077400|-0.1350853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408889|NR_030724|lncRNA|Homosapiens||RefGeneNoncode|NR_030724||9.3077400|-0.1350853	chr10	111624523	111626908	-	NA	NA	NA	NA	XPNPEP1	NA	chr10:111624524-111683311	inner
CUST_44126_PI429285431	5.9725323	P	5.1077805	P	1.82102635244376	0	lncRNA	48791-1_{1..3000}	"gi|374532809|ref|NR_046251.1| Homo sapiens FGD5 antisense RNA 1 (FGD5-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|374532809|ref|NR_046251.1| Homo sapiens FGD5 antisense RNA 1 (FGD5-AS1), transcript variant 1, non-coding RNA"	Chr3	 14984286	 14987285	-	100505641	NR_046251.1	NA	NA	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
CUST_26971_PI429285431	1.7135226	A	1.4835888	A	1.17278113335942	0	lncRNA	28497-1_{1..791}	n324058|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052804|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052804|-1.1545800|-0.3785922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324058|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052804|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052804|-1.1545800|-0.3785922	chr9	 82674492	 82675282	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26976_PI429285431	9.3643265	P	9.368425	P	0.997163167715322	0	lncRNA	28502-1_{1..458}	n324063|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052713|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052713|-1.0465900|-0.2547425	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324063|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052713|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052713|-1.0465900|-0.2547425	chr9	 77384404	 77384861	+	NA	NA	NA	NA	TRPM6	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90chr9:77374404-77403284"	NA	inner
CUST_42421_PI429285431	3.064046	P	3.6018438	P	0.688821557771061	0	lncRNA	45134-1_{1..82}	ENST00000363528 ncrna:snoRNA chromosome:GRCh37:15:25458795:25458876:1 gene:ENSG00000200398 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363528 ncrna:snoRNA chromosome:GRCh37:15:25458795:25458876:1 gene:ENSG00000200398 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 25458795	 25458876	+	ENSG00000200398	ENST00000363528	NA	NA	SNRPN	NA	chr15:25448795-25468876	inter
CUST_18352_PI429285431	1.924738	A	1.5323046	A	1.31260551517622	0	lncRNA	20080-1_{1..585}	lnc-AL117340.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AL117340.1-2:3	chr10	 31607825	 31608409	-	lnc-AL117340.1-2	lnc-AL117340.1-2:3	ENSG00000237036	ZEB1-AS1	ZEB1	NA	chr10:31608101-31617956	inter
CUST_12000_PI429285431	8.371784	P	8.590105	P	0.85956521149434	0	lncRNA	13581-1_{1..317}	lnc-HIST2H3PS2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HIST2H3PS2-3:1	chr1	148951247	148951563	-	lnc-HIST2H3PS2-3	lnc-HIST2H3PS2-3:1	XLOC_001009	linc-PPIAL4F-1	NA	"hg19_refFlat_LSP1:range=chr11:1901450-19087935'pad=0,hg19_refFlat_LSP1:range=chr11:1901450-19087935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_LSP1:range=chr11:1874375-19087935'pad=0,hg19_refFlat_LSP1:range=chr11:1874375-19087935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_LSP1:range=chr11:1887705-19087935'pad=0,hg19_refFlat_LSP1:range=chr11:1887705-19087935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60"	NA	inter
CUST_40360_PI429285431	10.74192	P	10.988585	P	0.842842518443996	0	lncRNA	41160-2_{3001..4913}	n409101|NR_033230|lncRNA|Homosapiens||RefGeneNoncode|NR_033230||16.3608000|-0.0887082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409101|NR_033230|lncRNA|Homosapiens||RefGeneNoncode|NR_033230||16.3608000|-0.0887082	chr2	130911964	130913876	-	NA	NA	NA	NA	MZT2B	"hg19_refFlat_MZT2A:range=chr2:132241634-1322499495'pad=0,hg19_refFlat_MZT2A:range=chr2:132241634-1322499495'pad=0 3'pad=0 strand=- repeatMasking=none,-113.70;hg19_refFlat_MZT2B:range=chr2:130939856-1309481995'pad=0,hg19_refFlat_MZT2B:range=chr2:130939856-1309481995'pad=0 3'pad=0 strand=+ repeatMasking=none,-113.70chr2:130939501-130948300"	NA	inner
CUST_33874_PI429285431	0.8775767	A	0.8800066	A	0.998317139266721	0	lncRNA	35418-1_{1..596}	n340662|BC016751|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3124|NULL|-1.0282700|-0.2351994	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340662|BC016751|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3124|NULL|-1.0282700|-0.2351994	chr5	140479828	140480423	-	NA	NA	NA	NA	PCDHB1	"hg19_refFlat_PCDHB15:range=chr5:140625147-1406275105'pad=0,hg19_refFlat_PCDHB15:range=chr5:140625147-1406275105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PCDHB13:range=chr5:140593696-1405960925'pad=0,hg19_refFlat_PCDHB13:range=chr5:140593696-1405960925'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PCDHB9:range=chr5:140566893-1405692855'pad=0,hg19_refFlat_PCDHB9:range=chr5:140566893-1405692855'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_PCDHB11:range=chr5:140579348-1405817415'pad=0,hg19_refFlat_PCDHB11:range=chr5:140579348-1405817415'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PCDHB12:range=chr5:140588480-1405908675'pad=0,hg19_refFlat_PCDHB12:range=chr5:140588480-1405908675'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_PCDHB5:range=chr5:140515017-1405174045'pad=0,hg19_refFlat_PCDHB5:range=chr5:140515017-1405174045'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_PCDHB16:range=chr5:140562135-1405644655'pad=0,hg19_refFlat_PCDHB16:range=chr5:140562135-1405644655'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PCDHB6:range=chr5:140529839-1405322235'pad=0,hg19_refFlat_PCDHB6:range=chr5:140529839-1405322235'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_PCDHB14:range=chr5:140603078-1406054745'pad=0,hg19_refFlat_PCDHB14:range=chr5:140603078-1406054745'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_PCDHB7:range=chr5:140552417-1405547985'pad=0,hg19_refFlat_PCDHB7:range=chr5:140552417-1405547985'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_PCDHB8:range=chr5:140557616-1405600215'pad=0,hg19_refFlat_PCDHB8:range=chr5:140557616-1405600215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PCDHB10:range=chr5:140572126-1405745285'pad=0,hg19_refFlat_PCDHB10:range=chr5:140572126-1405745285'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_PCDHB4:range=chr5:140501581-1405039685'pad=0,hg19_refFlat_PCDHB4:range=chr5:140501581-1405039685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PCDHB2:range=chr5:140474375-1404767715'pad=0,hg19_refFlat_PCDHB2:range=chr5:140474375-1404767715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PCDHB3:range=chr5:140480234-1404826245'pad=0,hg19_refFlat_PCDHB3:range=chr5:140480234-1404826245'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20chr5:140469828-140491794"	NA	inner
CUST_36275_PI429285431	1.3658903	A	1.3587577	A	1.00495618302458	0	lncRNA	37511-1_{1..1900}	n344805|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_354|NULL|-1.3448300|-0.2627012	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344805|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_354|NULL|-1.3448300|-0.2627012	chr13	 43384501	 43386400	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_464_PI429285431	0.8872403	A	1.1134667	A	0.854868014191495	0	lncRNA	455-1_{1..649}	"transcript_id ""ENST00000442358.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442358.1"" | genecode_v17"	chr1	158101834	158102482	-	ENSG00000231666.1	ENST00000442358.1	RP11-404O13.1	RP11-404O13.1-002	NA	NA	NA	inter
CUST_24342_PI429285431	11.997241	P	12.737389	P	0.598677933314773	0	lncRNA	25895-1_{1..546}	lnc-SLC6A4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC6A4-1:1	chr17	 28452811	 28453356	-	lnc-SLC6A4-1	lnc-SLC6A4-1:1	ENSG00000265739.1	RP11-354P11.3	NSRP1	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-24.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50chr17:28443834-28463136"	NA	inner
CUST_10172_PI429285431	1.1011974	A	0.9268878	A	1.12842426948064	0	lncRNA	11697-1_{1..527}	lnc-SH3D19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SH3D19-1:1	chr4	152329787	152330313	-	lnc-SH3D19-1	lnc-SH3D19-1:1	XLOC_004122	linc-SH3D19	FAM160A1	NA	chr4:152330398-152340005	inter
CUST_34248_PI429285431	0.917917	A	0.9585557	A	0.972224435624815	0	lncRNA	35752-1_{1..771}	n341103|BC031306|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3569|NULL|-1.3055500|-0.2240262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341103|BC031306|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3569|NULL|-1.3055500|-0.2240262	chr11	 96123152	 96123922	+	NA	NA	NA	NA	JRKL	NA	chr11:96123158-96126727	inter
CUST_8805_PI429285431	3.8050869	P	4.035716	P	0.852263173793731	0	lncRNA	10346-1_{1..2279}	lnc-BRF1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-BRF1-1:2	chr14	105885359	105887637	-	lnc-BRF1-1	lnc-BRF1-1:2	ENSG00000251602	RP11-521B24.3	MTA1	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SSH1:range=chr12:109185876-1092512725'pad=0,hg19_refFlat_SSH1:range=chr12:109185876-1092512725'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_SSH1:range=chr12:109185876-1092211815'pad=0,hg19_refFlat_SSH1:range=chr12:109185876-1092211815'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10chr14:105886186-105896076"	NA	inter
CUST_24543_PI429285431	0.9222787	A	0.93378985	A	0.992052825932015	0	lncRNA	26093-1_{1..446}	lnc-ADAMTS12-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ADAMTS12-3:3	chr5	 33023181	 33023626	-	lnc-ADAMTS12-3	lnc-ADAMTS12-3:3	ENSG00000250697.1	CTD-2066L21.3	NA	NA	NA	inter
CUST_42821_PI429285431	7.172533	P	7.202659	P	0.979334762137517	0	lncRNA	45830-1_{1..132}	ENST00000365075 ncrna:snoRNA chromosome:GRCh37:12:121544846:121544977:1 gene:ENSG00000201945 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365075 ncrna:snoRNA chromosome:GRCh37:12:121544846:121544977:1 gene:ENSG00000201945 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	121544846	121544977	+	ENSG00000201945	ENST00000365075	NA	NA	NA	NA	NA	inter
CUST_50704_PI429285431	10.920099	P	10.458615	P	1.37695747025889	0	lncRNA	54375-1_{1..419}	hg19_lincRNAsTranscripts_TCONS_l2_00003602 range=chr10:70304127-70304647 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003602 range=chr10:70304127-70304647 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 70304127	 70304545	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29842_PI429285431	13.085794	P	12.167773	P	1.88952158584199	0	lncRNA	31605-1_{1..347}	n333732|L05090|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191667|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191667|2.2706000|-0.4168943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333732|L05090|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191667|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191667|2.2706000|-0.4168943	chr11	 17096683	 17097029	-	NA	NA	NA	NA	PIK3C2A	NA	chr11:17108122-17109015	inner
CUST_37443_PI429285431	1.5082393	A	1.8976343	A	0.76344969307673	0	lncRNA	38542-1_{1..384}	n345891|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1440|NULL|-1.5415200|-0.1459586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345891|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1440|NULL|-1.5415200|-0.1459586	chr1	234881854	234882237	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16560_PI429285431	1.7533345	A	0.90243244	A	1.80362830999105	0	lncRNA	18261-1_{1..267}	lnc-EXT1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXT1-3:1	chr8	118695828	118696094	-	lnc-EXT1-3	lnc-EXT1-3:1	XLOC_007189	linc-RAD21-3	NA	NA	NA	inter
CUST_31225_PI429285431	1.3674526	A	0.9289969	A	1.35515295821935	0	lncRNA	33017-1_{1..2069}	n337674|AK091793|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|56|NULL|-0.2738230|-0.1764230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337674|AK091793|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|56|NULL|-0.2738230|-0.1764230	chr15	 25917503	 25919571	-	NA	NA	NA	NA	ATP10A	NA	chr15:25923859-25929572	inter
CUST_8421_PI429285431	0.8998531	A	1.1162857	A	0.860691066716646	0	lncRNA	9993-1_{1..1917}	lnc-LOH12CR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LOH12CR1-1:1	chr12	 12630696	 12632612	+	lnc-LOH12CR1-1	lnc-LOH12CR1-1:1	ENSG00000249457	ENST00000513126	DUSP16	"hg19_refFlat_DUSP16:range=chr12:12629767-126740325'pad=0,hg19_refFlat_DUSP16:range=chr12:12629767-126740325'pad=0 3'pad=0 strand=- repeatMasking=none,-98.50chr12:12626216-12640834"	NA	inner
CUST_42199_PI429285431	3.502884	P	3.7878227	P	0.820776482798468	0	lncRNA	44275-1_{1..79}	ENST00000459487 ncrna:miRNA chromosome:GRCh37:14:103669523:103669601:1 gene:ENSG00000239117 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459487 ncrna:miRNA chromosome:GRCh37:14:103669523:103669601:1 gene:ENSG00000239117 gene_biotype:miRNA transcript_biotype:miRNA	chr14	103669523	103669601	+	ENSG00000239117	ENST00000459487	NA	NA	NA	NA	NA	inter
CUST_48218_PI429285431	2.9954088	A	0.9682287	A	4.07607359464496	0	lncRNA	52081-1_{1..1324}	hg19_lincRNAsTranscripts_TCONS_l2_00001430 range=chr1:106469905-106565836 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001430 range=chr1:106469905-106565836 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	106469905	106471228	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45456_PI429285431	4.8221445	P	4.635233	P	1.13832419811361	0	lncRNA	49872-1_{1..2051}	"gi|397139954|ref|XR_109858.2| PREDICTED: Homo sapiens uncharacterized LOC100506620 (LOC100506620), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139954|ref|XR_109858.2| PREDICTED: Homo sapiens uncharacterized LOC100506620 (LOC100506620), misc_RNA"	NA	NA	NA	NA	NA	XR_109858.2	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	Unknown
CUST_25836_PI429285431	0.9216624	A	0.93861854	A	0.988315697259778	0	lncRNA	27357-1_{1..457}	lnc-TRAM1L1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TRAM1L1-3:1	chr4	117218115	117218571	-	lnc-TRAM1L1-3	lnc-TRAM1L1-3:1	ENSG00000248173.1	RP11-659O3.1	NA	NA	NA	inter
CUST_41972_PI429285431	0.8840212	A	0.89178675	A	0.994631791518072	0	lncRNA	43785-1_{1..85}	ENST00000581069 ncrna:miRNA chromosome:GRCh37:1:224585929:224586013:-1 gene:ENSG00000266618 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581069 ncrna:miRNA chromosome:GRCh37:1:224585929:224586013:-1 gene:ENSG00000266618 gene_biotype:miRNA transcript_biotype:miRNA	chr1	224585929	224586013	-	ENSG00000266618	ENST00000581069	NA	NA	WDR26	NA	chr1:224575929-224596013	inner
CUST_11915_PI429285431	2.8317587	A	2.7867334	A	1.03170127169966	0	lncRNA	13496-1_{1..462}	lnc-FBXO15-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXO15-3:1	chr18	 71358464	 71358925	-	lnc-FBXO15-3	lnc-FBXO15-3:1	XLOC_012881	linc-NETO1-1	NA	NA	NA	inter
CUST_37964_PI429285431	10.069738	P	10.205152	P	0.91040854259797	0	lncRNA	39052-1_{1..836}	n346511|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2061|NULL|-1.3816500|-0.0961968	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346511|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2061|NULL|-1.3816500|-0.0961968	chr2	 38708915	 38709750	-	NA	NA	NA	NA	NA	"hg19_refFlat_RPLP0:range=chr12:120634576-1206385865'pad=0,hg19_refFlat_RPLP0:range=chr12:120634576-1206385865'pad=0 3'pad=0 strand=- repeatMasking=none,-95.10"	NA	inter
CUST_28493_PI429285431	0.88998115	A	1.0539459	A	0.892568779730593	0	lncRNA	30161-1_{1..722}	n325836|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000034754|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000034754|-1.3088500|-0.1411462	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325836|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000034754|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000034754|-1.3088500|-0.1411462	chr11	  1968901	  1969622	+	NA	NA	NA	NA	TNNT3	NA	chr11:1958901-1959936	inner
CUST_12122_PI429285431	0.9071838	A	0.9023624	A	1.0033475303232	0	lncRNA	13719-1_{1..1016}	lnc-ABCC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABCC4-1:1	chr13	 95956351	 95957366	-	lnc-ABCC4-1	lnc-ABCC4-1:1	XLOC_010696	linc-ABCC4-1	ABCC4	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-41.96;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr13:95946351-95953687"	NA	inter
CUST_39178_PI429285431	7.136202	P	7.495001	P	0.779813480671893	0	lncRNA	40153-1_{1..1134}	n385917|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009viy.2||8.6507300|-0.0730987	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385917|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009viy.2||8.6507300|-0.0730987	chr1	    16606	    17739	-	NA	NA	NA	NA	LOC100652771	NA	chr1:12190-13639	inter
LNCA_33_P3344861	1.1512227	A	0.89824146	A	1.19166707870062	0	lncRNA	XR_108709	XR_108709	XR_108709	   389602	Hs.583071	LOC389602	uncharacterized LOC389602	ENST00000377722	THC2480651	NA	"PREDICTED: Homo sapiens hypothetical LOC389602 (LOC389602), miscRNA [XR_108709]"	chr7:155758948-155759007	hs|7q36.3	Agilent_HUMAN_G3V2	XR_108709	XR_108709	chr7	155758948	155759007	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20604_PI429285431	1.7708018	A	2.076485	A	0.809058989333114	0	lncRNA	22243-1_{1..124}	lnc-COX17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COX17-1:1	chr3	119467945	119468068	-	lnc-COX17-1	lnc-COX17-1:1	ENSG00000239994.1	RP11-169N13.4	C3orf15	NA	chr3:119457945-119478040	inner
CUST_44607_PI429285431	0.9031532	A	0.9009811	A	1.001506718953	0	lncRNA	49181-2_{3001..3140}	"gi|310119628|ref|XR_110309.1| PREDICTED: Homo sapiens uncharacterized LOC100505636, transcript variant 1 (LOC100505636), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310119628|ref|XR_110309.1| PREDICTED: Homo sapiens uncharacterized LOC100505636, transcript variant 1 (LOC100505636), misc_RNA"	NA	NA	NA	NA	NA	XR_110309.1	NA	NA	NA	NA	NA	Unknown
CUST_32680_PI429285431	3.9786496	P	4.999286	P	0.492898877290394	0	lncRNA	34330-1_{1..532}	n339311|BC052334|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1743|NULL|1.6032500|-0.1702257	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339311|BC052334|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1743|NULL|1.6032500|-0.1702257	chr16	 84150655	 84151186	+	NA	NA	NA	NA	MBTPS1	NA	chr16:84140655-84150517	inter
CUST_42087_PI429285431	3.9499516	P	4.2392106	P	0.818322259001497	0	lncRNA	44019-1_{1..99}	ENST00000362252 ncrna:miRNA chromosome:GRCh37:12:54731000:54731098:1 gene:ENSG00000199122 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362252 ncrna:miRNA chromosome:GRCh37:12:54731000:54731098:1 gene:ENSG00000199122 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 54731000	 54731098	+	ENSG00000199122	ENST00000362252	NA	NA	COPZ1	NA	chr12:54721000-54741098	inter
CUST_20644_PI429285431	2.9921281	A	2.269205	A	1.65052283683174	0	lncRNA	22283-1_{1..1660}	lnc-B9D1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-B9D1-1:1	chr17	 19237937	 19239596	-	lnc-B9D1-1	lnc-B9D1-1:1	ENSG00000265263.1	RP11-135L13.4	EPN2	NA	chr17:19227937-19240028	inner
CUST_5214_PI429285431	2.7205522	A	2.4703674	A	1.18935945457865	0	lncRNA	5154-1_{1..928}	"transcript_id ""ENST00000559285.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559285.1"" | genecode_v17"	chr15	 67713547	 67714474	-	ENSG00000259673.1	ENST00000559285.1	IQCH-AS1	IQCH-AS1-005	IQCH	"hg19_refFlat_IQCH:range=chr15:67547235-677930845'pad=0,hg19_refFlat_IQCH:range=chr15:67547235-677930845'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80chr15:67703547-67794142"	NA	inter
CUST_46789_PI429285431	0.89050335	A	0.88616097	A	1.00301444277653	0	lncRNA	50935-1_{1..2525}	"gi|225637553|ref|NR_027384.1| Homo sapiens solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 (SLC13A2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225637553|ref|NR_027384.1| Homo sapiens solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 (SLC13A2), transcript variant 4, non-coding RNA"	NW_003871090.1	   155507	   158031	+	9058	NR_027384.1	NA	NA	NA	NA	NA	Unknown
CUST_33302_PI429285431	0.8759334	A	1.4150307	A	0.688201384712288	0	lncRNA	34885-1_{1..3000}	n340018|AK126558|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2471|NULL|0.7155510|-0.3233669	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340018|AK126558|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2471|NULL|0.7155510|-0.3233669	chr10	 44134002	 44137001	+	NA	NA	NA	NA	ZNF32	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50chr10:44139307-44144326"	NA	inter
LNCA_21_P0010449	0.8776717	A	5.010187	P	0.0570149748596392	0	lncRNA	ENST00000422971	XR_109732	XR_109732	NA	Hs.517692	XLOC_014399	NA	ENST00000422971	THC2633626	NA	"PREDICTED: Homo sapiens hypothetical LOC100506737 (LOC100506737), miscRNA [XR_109732]"	chr22:46000392-46000333	hs|22q13.31	Agilent_HUMAN_G3V2	ENST00000422971	ENST00000422971	chr22	 46000333	 46000392	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13939_PI429285431	1.6380503	A	1.1381657	A	1.41410044510748	0	lncRNA	15586-1_{1..526}	lnc-AC145676.2.1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC145676.2.1-4:3	chr7	   149329	   149854	-	lnc-AC145676.2.1-4	lnc-AC145676.2.1-4:3	XLOC_006326	linc-VIPR2-4	NA	NA	NA	inter
CUST_30303_PI429285431	1.3005402	A	1.2482084	A	1.03693955542182	0	lncRNA	32079-1_{1..337}	n335205|AY495952|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254946|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254946|1.0690800|-0.1414535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335205|AY495952|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254946|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254946|1.0690800|-0.1414535	chr7	 31126585	 31126921	+	NA	NA	NA	NA	ADCYAP1R1	NA	chr7:31116585-31151093	inner
CUST_16156_PI429285431	2.4280689	A	0.87944466	A	2.92538040641493	0	lncRNA	17862-1_{1..1189}	lnc-GRAMD3-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRAMD3-1:5	chr5	125529293	125530481	+	lnc-GRAMD3-1	lnc-GRAMD3-1:5	XLOC_004539	linc-GRAMD3-1	NA	NA	NA	inter
CUST_34148_PI429285431	3.4846535	P	3.8014581	P	0.802846119600913	0	lncRNA	35666-1_{1..312}	n340987|AJ488204|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3453|NULL|-0.8902820|-0.1429813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340987|AJ488204|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3453|NULL|-0.8902820|-0.1429813	chr11	 19618340	 19618651	+	NA	NA	NA	NA	NAV2	NA	chr11:19608340-19628652	inner
LNCA_21_P0006852	4.0833774	P	4.654984	P	0.672867059396198	0	lncRNA	TCONS_00018153	NA	NA	NA	NA	XLOC_008440	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008440), lincRNA [TCONS_00018153]"	chr10:31428164-31429302	hs|10p11.22	Agilent_HUMAN_G3V2	TCONS_00018153	TCONS_00018153	chr10	 31428164	 31429302	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008988	0.8775519	A	0.87911016	A	0.998920479576278	0	lncRNA	TCONS_00024497	NA	NA	NA	NA	XLOC_011816	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011816), lincRNA [TCONS_00024497]"	chr16:86750596-86751872	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024497	TCONS_00024497	chr16	 86750596	 86751872	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39738_PI429285431	7.644294	P	8.012491	P	0.774750131609621	0	lncRNA	40663-1_{1..906}	n405709|NR_002946|lncRNA|Homosapiens||RefGeneNoncode|NR_002946||5.5281500|-0.0311496	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405709|NR_002946|lncRNA|Homosapiens||RefGeneNoncode|NR_002946||5.5281500|-0.0311496	chr1	  1568158	  1569063	+	NA	NA	NA	NA	CDK11B	NA	chr1:1571100-1580027	inter
CUST_33633_PI429285431	0.89876807	A	0.9049953	A	0.99569291529202	0	lncRNA	35198-1_{1..528}	n340395|U52839|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2856|NULL|-1.3688700|-0.1575912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340395|U52839|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2856|NULL|-1.3688700|-0.1575912	chr5	 10707562	 10708089	-	NA	NA	NA	NA	DAP	NA	chr5:10697562-10718090	inner
CUST_50975_PI429285431	1.3252122	A	1.8451898	A	0.697382661000829	0	lncRNA	54617-1_{1..338}	hg19_lincRNAsTranscripts_TCONS_l2_00005841 range=chr12:96986180-96988170 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005841 range=chr12:96986180-96988170 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 96986180	 96986517	+	NA	NA	NA	NA	C12orf55	NA	chr12:96976180-96998170	inter
CUST_19782_PI429285431	6.312806	P	6.2512608	P	1.04358289300711	0	lncRNA	21440-1_{1..913}	lnc-C17orf97-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf97-1:1	chr17	   206494	   207406	+	lnc-C17orf97-1	lnc-C17orf97-1:1	ENSG00000262558.1	RP11-1260E13.3	RPH3AL	NA	chr17:196494-202633	inter
CUST_30974_PI429285431	2.2968857	A	2.3391292	A	0.971143570796581	0	lncRNA	32762-1_{1..1098}	n337124|AB041373|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383141|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383141|4.1593300|-0.2851774	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337124|AB041373|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383141|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383141|4.1593300|-0.2851774	chr6	 87725044	 87726141	+	NA	NA	NA	NA	HTR1E	NA	chr6:87715044-87726397	inner
CUST_42956_PI429285431	0.8776482	A	0.8818223	A	0.997110915813012	0	lncRNA	46085-1_{1..126}	ENST00000362763 ncrna:snoRNA chromosome:GRCh37:15:78383514:78383639:-1 gene:ENSG00000199633 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362763 ncrna:snoRNA chromosome:GRCh37:15:78383514:78383639:-1 gene:ENSG00000199633 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 78383514	 78383639	-	ENSG00000199633	ENST00000362763	NA	NA	SH2D7	NA	chr15:78384927-78393639	inter
CUST_7803_PI429285431	4.1483603	P	3.841012	P	1.23743118717934	0	lncRNA	9427-1_{1..1158}	lnc-PCYOX1L-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PCYOX1L-2:6	chr5	148804660	148805817	+	lnc-PCYOX1L-2	lnc-PCYOX1L-2:6	ENSG00000249669	RP11-394O4.2	NA	NA	NA	inter
LNCA_21_P0003379	0.8788479	A	0.8798225	A	0.999324686884439	0	lncRNA	ENST00000507739	NA	NA	NA	NA	XLOC_003577	NA	ENST00000507739	NA	NA	"BROAD Institute lincRNA (XLOC_003577), lincRNA [TCONS_00007552]"	chr4:76348019-76348078	hs|4q21.1	Agilent_HUMAN_G3V2	ENST00000507739	ENST00000507739	chr4	 76348019	 76348078	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30116_PI429285431	2.9211423	A	1.7981578	A	2.17797063090638	0	lncRNA	31889-1_{1..776}	n334678|AJ001864|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243907|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243907|1.8867100|-0.1605199	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334678|AJ001864|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243907|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243907|1.8867100|-0.1605199	chr21	 38309468	 38310243	-	NA	NA	NA	NA	HLCS	NA	chr21:38299468-38362545	inner
CUST_47578_PI429285431	8.919692	P	8.857662	P	1.0439336351857	0	lncRNA	51582-1_{1..1014}	"gi|218931206|ref|NR_024616.1| Homo sapiens inactivation escape 1 (non-protein coding) (INE1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|218931206|ref|NR_024616.1| Homo sapiens inactivation escape 1 (non-protein coding) (INE1), non-coding RNA"	NW_004166866.1	   454409	   455422	+	8552	NR_024616.1	NA	NA	NA	"hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70"	NA	Unknown
LNCA_21_P0006821	2.7999227	A	2.216491	A	1.4984092387981	0	lncRNA	TCONS_00018097	NA	NA	NA	NA	XLOC_008366	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008366), lincRNA [TCONS_00018097]"	chr10:6183386-6183445	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_00018097	TCONS_00018097	chr10	  6183386	  6183445	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42401_PI429285431	7.1736603	P	7.2661786	P	0.937884193396908	0	lncRNA	45097-1_{1..73}	ENST00000363311 ncrna:snoRNA chromosome:GRCh37:1:31441011:31441083:-1 gene:ENSG00000200181 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363311 ncrna:snoRNA chromosome:GRCh37:1:31441011:31441083:-1 gene:ENSG00000200181 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 31441011	 31441083	-	ENSG00000200181	ENST00000363311	NA	NA	PUM1	NA	chr1:31431011-31451083	inner
CUST_45995_PI429285431	6.6725373	P	6.655758	P	1.0116984220093	0	lncRNA	50283-2_{3001..3684}	"gi|299829205|ref|NR_033890.1| Homo sapiens uncharacterized LOC338817 (LOC338817), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299829205|ref|NR_033890.1| Homo sapiens uncharacterized LOC338817 (LOC338817), non-coding RNA"	Chr12	 11703964	 11704647	+	338817	NR_033890.1	NA	NA	NA	NA	NA	inter
CUST_13370_PI429285431	2.2397223	A	0.89279145	A	2.5437040879601	0	lncRNA	15005-2_{3001..4186}	lnc-TRIM38-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIM38-1:2	chr6	 26001131	 26002316	+	lnc-TRIM38-1	lnc-TRIM38-1:2	XLOC_005208	linc-HIST1H3A	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_3032_PI429285431	0.9002959	A	0.8943001	A	1.00416461989244	0	lncRNA	3011-1_{1..417}	"transcript_id ""ENST00000518967.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518967.1"" | genecode_v17"	chr8	 20810156	 20810572	-	ENSG00000254092.1	ENST00000518967.1	RP11-369E15.3	RP11-369E15.3-001	NA	NA	NA	inter
CUST_721_PI429285431	0.8815739	A	0.88793164	A	0.995602846357731	0	lncRNA	714-1_{1..688}	"transcript_id ""ENST00000592730.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592730.1"" | genecode_v17"	chr2	  6789284	  6789971	-	ENSG00000236172.2	ENST00000592730.1	AC097517.2	AC097517.2-054	NA	NA	NA	inter
LNCA_21_P0003445	0.88128406	A	2.53576	A	0.317653112398971	0	lncRNA	XR_108536	XR_108536	XR_108536	NA	Hs.98317	LOC100507150	uncharacterized LOC100507150	NA	THC2614988	NA	"PREDICTED: Homo sapiens hypothetical LOC100507150 (LOC100507150), miscRNA [XR_108536]"	chr4:3760586-3760527	hs|4p16.3	Agilent_HUMAN_G3V2	XR_108536	XR_108536	chr4	  3760527	  3760586	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47116_PI429285431	1.6902316	A	0.90484846	A	1.72354998597438	0	lncRNA	51198-1_{1..2699}	"gi|333470711|ref|NR_038248.1| Homo sapiens uncharacterized LOC100507433 (LOC100507433), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333470711|ref|NR_038248.1| Homo sapiens uncharacterized LOC100507433 (LOC100507433), transcript variant 2, non-coding RNA"	Chr19	 38039851	 38042549	+	100507433	NR_038248.1	NA	NA	NA	"hg19_refFlat_ZNF571:range=chr19:38055500-380775775'pad=0,hg19_refFlat_ZNF571:range=chr19:38055500-380775775'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40"	NA	inter
CUST_28071_PI429285431	2.4214826	A	3.5841556	P	0.446684159745349	0	lncRNA	29690-1_{1..551}	n325338|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325579|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325579|-1.0148300|-0.2172979	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325338|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325579|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325579|-1.0148300|-0.2172979	chr2	 37920684	 37921234	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33051_PI429285431	8.214393	P	8.232112	P	0.987793239503408	0	lncRNA	34663-1_{1..961}	n339741|CR618967|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2187|NULL|-1.0771700|-0.3460740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339741|CR618967|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2187|NULL|-1.0771700|-0.3460740	chr3	191089935	191090895	+	NA	NA	NA	NA	CCDC50	NA	chr3:191079935-191100896	inner
CUST_35120_PI429285431	0.8987012	A	0.88754433	A	1.00776333258969	0	lncRNA	36525-1_{1..2283}	n342088|BC047582|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4570|NULL|-1.0491000|-0.3217057	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342088|BC047582|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4570|NULL|-1.0491000|-0.3217057	chr6	 96023058	 96025340	-	NA	NA	NA	NA	MANEA	NA	chr6:96025373-96035326	inter
CUST_23808_PI429285431	1.1510433	A	1.2168859	A	0.955387164741548	0	lncRNA	25373-1_{1..385}	lnc-RNASET2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNASET2-1:1	chr6	167412406	167412790	-	lnc-RNASET2-1	lnc-RNASET2-1:1	ENSG00000227598.1	RP1-167A14.2	FGFR1OP	NA	chr6:167412816-167422553	inter
CUST_43161_PI429285431	6.9613905	P	7.3042674	P	0.788467448289118	0	lncRNA	47976-1_{1..649}	ENST00000598534 havana:sense_intronic chromosome:GRCh37:13:113663985:113664633:1 gene:ENSG00000269376 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000598534 havana:sense_intronic chromosome:GRCh37:13:113663985:113664633:1 gene:ENSG00000269376 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr13	113663985	113664633	+	ENSG00000269376	ENST00000598534	NA	NA	MCF2L	NA	chr13:113653985-113674633	inner
CUST_34311_PI429285431	0.90518546	A	0.9262132	A	0.98553038707471	0	lncRNA	35805-1_{1..982}	n341172|BC034433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3638|NULL|-1.1241900|-0.2452240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341172|BC034433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3638|NULL|-1.1241900|-0.2452240	chr7	  2983668	  2984649	+	NA	NA	NA	NA	CARD11	"hg19_refFlat_CARD11:range=chr7:2946272-29981405'pad=0,hg19_refFlat_CARD11:range=chr7:2946272-29981405'pad=0 3'pad=0 strand=- repeatMasking=none,-95.20chr7:2973668-2996725"	NA	inner
CUST_47811_PI429285431	13.525625	P	12.177341	P	2.54609102891515	0	lncRNA	51726-5_{12001..13357}	"gi|374429547|ref|NR_046235.1| Homo sapiens RNA, 45S pre-ribosomal 5 (RNA45S5), ribosomal RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ensembl.GRCh37.72,ncbi,"	">gi|374429547|ref|NR_046235.1| Homo sapiens RNA, 45S pre-ribosomal 5 (RNA45S5), ribosomal RNA"	NA	NA	NA	NA	NA	NR_046235.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004047	6.885161	P	6.093665	P	1.73086835316151	0	lncRNA	ENST00000506392	NA	BC038569	NA	Hs.385789	XLOC_004512	NA	ENST00000506392	THC2613001	NA	"BROAD Institute lincRNA (XLOC_004512), lincRNA [TCONS_00009487]"	chr5:113915550-113915609	hs|5q22.3	Agilent_HUMAN_G3V2	ENST00000506392	ENST00000506392	chr5	113915550	113915609	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8698_PI429285431	0.92518616	A	0.902544	A	1.01581815248867	0	lncRNA	10245-1_{1..570}	lnc-MBL2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBL2-4:1	chr10	 54230157	 54230726	-	lnc-MBL2-4	lnc-MBL2-4:1	ENSG00000231131	XLOC_008823	NA	NA	NA	inter
CUST_40022_PI429285431	2.635046	A	0.9214804	A	3.27970396695083	0	lncRNA	40880-3_{6001..6162}	n407180|NR_026641|lncRNA|Homosapiens||RefGeneNoncode|NR_026641||9.5800600|-0.2441475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407180|NR_026641|lncRNA|Homosapiens||RefGeneNoncode|NR_026641||9.5800600|-0.2441475	chr17	 59948727	 59948888	-	NA	NA	NA	NA	BRIP1	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50chr17:59932727-59940920"	NA	inter
CUST_41790_PI429285431	0.9053801	A	0.9118525	A	0.995523722715582	0	lncRNA	43369-1_{1..87}	ENST00000384973 ncrna:miRNA chromosome:GRCh37:19:54203269:54203355:1 gene:ENSG00000207706 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384973 ncrna:miRNA chromosome:GRCh37:19:54203269:54203355:1 gene:ENSG00000207706 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54203269	 54203355	+	ENSG00000207706	ENST00000384973	NA	NA	NA	NA	NA	inter
CUST_20589_PI429285431	5.6600504	P	5.3564034	P	1.23426056988906	0	lncRNA	22228-1_{1..497}	lnc-SMNDC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMNDC1-2:1	chr10	112255877	112256373	-	lnc-SMNDC1-2	lnc-SMNDC1-2:1	ENSG00000235874.1	RP11-525A16.1	DUSP5	NA	chr10:112257625-112265954	inter
CUST_33435_PI429285431	5.1364007	P	5.834277	P	0.616479018798688	0	lncRNA	35013-1_{1..2195}	n340165|AK024592|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2626|NULL|0.2821440|-0.1946474	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340165|AK024592|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2626|NULL|0.2821440|-0.1946474	chr10	123854006	123856200	+	NA	NA	NA	NA	TACC2	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60chr10:123844006-123866201"	NA	inner
CUST_26020_PI429285431	0.8880532	A	0.90065277	A	0.991304668559674	0	lncRNA	27539-1_{1..740}	lnc-TYW5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TYW5-1:1	chr2	200775525	200776264	-	lnc-TYW5-1	lnc-TYW5-1:1	ENSG00000232732.3	AC073043.1	C2orf69	NA	chr2:200775979-200785805	inter
CUST_23002_PI429285431	8.665658	P	8.331221	P	1.26088526259599	0	lncRNA	24576-1_{1..516}	lnc-RASGEF1B-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RASGEF1B-1:4	chr4	 82965154	 82965669	-	lnc-RASGEF1B-1	lnc-RASGEF1B-1:4	ENSG00000251331.1	RP11-689K5.3	NA	NA	NA	inter
LNCA_21_P0004783	0.9025553	A	0.92184603	A	0.986717683804323	0	lncRNA	ENST00000426166	NA	NA	NA	NA	XLOC_005861	NA	ENST00000426166	NA	NA	"BROAD Institute lincRNA (XLOC_005861), lincRNA [TCONS_00011578]"	chr6:142573049-142572990	hs|6q24.1	Agilent_HUMAN_G3V2	ENST00000426166	ENST00000426166	chr6	142572990	142573049	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49476_PI429285431	1.0732512	A	2.0964613	A	0.492020352765709	0	lncRNA	53270-1_{1..469}	hg19_lincRNAsTranscripts_TCONS_l2_00024559 range=chr6:1459073-1489853 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024559 range=chr6:1459073-1489853 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	  1459073	  1459541	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14003_PI429285431	2.526465	A	1.5314263	A	1.99313399035111	0	lncRNA	15648-1_{1..488}	lnc-AC136604.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC136604.1-1:5	chr5	179095218	179095705	+	lnc-AC136604.1-1	lnc-AC136604.1-1:5	XLOC_004677	linc-CANX-1	CBY3	NA	chr5:179085218-179105672	inter
LNCA_21_P0007590	1.1052711	A	2.0545526	A	0.517890320679065	0	lncRNA	ENST00000550042	NA	NA	NA	NA	XLOC_009813	NA	ENST00000550042	NA	NA	"BROAD Institute lincRNA (XLOC_009813), lincRNA [TCONS_00020485]"	chr12:77965908-77965967	hs|12q21.2	Agilent_HUMAN_G3V2	ENST00000550042	ENST00000550042	chr12	 77965908	 77965967	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14774_PI429285431	2.3876343	A	2.4662094	A	0.94699249672982	0	lncRNA	16435-1_{1..347}	lnc-EFNB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFNB1-1:1	chrX	 68256908	 68257254	+	lnc-EFNB1-1	lnc-EFNB1-1:1	XLOC_008005	linc-FAM155B	NA	NA	NA	inter
LNCA_21_P0013885	7.231222	P	6.8386545	P	1.31272752889048	0	lncRNA	TCONS_l2_00030913	NA	NA	NA	NA	XLOC_l2_015907	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015907), lincRNA [TCONS_l2_00030913]"	chrY:26291082-26292234	hs|Yq11.23	Agilent_HUMAN_G3V2	TCONS_l2_00030913	TCONS_l2_00030913	chrY	 26291082	 26292234	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009745	1.07302	A	0.91175103	A	1.11827031715049	0	lncRNA	TCONS_00027231	NA	NA	NA	NA	XLOC_013270	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013270), lincRNA [TCONS_00027231]"	chr19:23086857-23086798	hs|19p12	Agilent_HUMAN_G3V2	TCONS_00027231	TCONS_00027231	chr19	 23086798	 23086857	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33438_PI429285431	1.176539	A	1.6924438	A	0.699354188559201	0	lncRNA	35016-1_{1..1284}	n340170|CR621992|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2631|NULL|-1.0344500|-0.2792869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340170|CR621992|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2631|NULL|-1.0344500|-0.2792869	chr10	127931237	127932520	-	NA	NA	NA	NA	ADAM12	NA	chr10:127921237-127942521	inner
CUST_19429_PI429285431	6.461117	P	6.4418306	P	1.01345806920343	0	lncRNA	21089-1_{1..500}	lnc-TPCN2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TPCN2-5:1	chr11	 68926914	 68927413	+	lnc-TPCN2-5	lnc-TPCN2-5:1	ENSG00000259799.1	RP11-554A11.9	NA	NA	NA	inter
CUST_28738_PI429285431	0.90064186	A	0.9190744	A	0.987304809380227	0	lncRNA	30439-1_{1..580}	n326133|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331248|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331248|-1.2513800|-0.4328076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326133|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331248|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331248|-1.2513800|-0.4328076	chr1	246922114	246922693	+	NA	NA	NA	NA	LOC100130097	NA	chr1:246935180-246939034	inner
CUST_44330_PI429285431	4.4942594	P	4.887561	P	0.761385183211865	0	lncRNA	48959-1_{1..2925}	"gi|125345708|ref|NR_003291.1| Homo sapiens ankyrin repeat domain 18D, pseudogene (ANKRD18DP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|125345708|ref|NR_003291.1| Homo sapiens ankyrin repeat domain 18D, pseudogene (ANKRD18DP), non-coding RNA"	NA	NA	NA	NA	NA	NR_003291.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001497	7.677609	P	7.292022	P	1.306391220024	0	lncRNA	TCONS_00001484	NA	NA	NA	NA	XLOC_000822	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000822), lincRNA [TCONS_00001484]"	chr1:47846446-47846387	hs|1p33	Agilent_HUMAN_G3V2	TCONS_00001484	TCONS_00001484	chr1	 47846387	 47846446	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26954_PI429285431	8.321799	P	8.252185	P	1.04943586444238	0	lncRNA	28475-1_{1..738}	n324035|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053052|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053052|-1.1507300|-0.3018888	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324035|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053052|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053052|-1.1507300|-0.3018888	chr9	 93943400	 93944137	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16115_PI429285431	1.1927738	A	0.87800586	A	1.24381156795849	0	lncRNA	17821-1_{1..871}	lnc-SIRT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIRT1-1:1	chr10	 69609537	 69610407	+	lnc-SIRT1-1	lnc-SIRT1-1:1	XLOC_008503	linc-SIRT1	NA	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.51;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50"	NA	inter
CUST_27243_PI429285431	0.9215416	A	1.4881328	A	0.67521029207798	0	lncRNA	28792-1_{1..813}	n324385|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042289|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042289|-0.8963840|-0.2489870	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324385|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042289|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042289|-0.8963840|-0.2489870	chr6	134183977	134184789	+	NA	NA	NA	NA	TCF21	NA	chr6:134210259-134216675	inner
CUST_20503_PI429285431	1.6294826	A	0.9321184	A	1.62153953636232	0	lncRNA	22145-1_{1..580}	lnc-BAZ1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-BAZ1A-1:1	chr14	 35451630	 35452209	-	lnc-BAZ1A-1	lnc-BAZ1A-1:1	ENSG00000258704.1	RP11-85K15.2	SRP54	NA	chr14:35452104-35461738	inter
CUST_26225_PI429285431	0.8972915	A	0.89947176	A	0.998489900277877	0	lncRNA	27732-1_{1..755}	lnc-KIFAP3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIFAP3-2:2	chr1	170501025	170501779	-	lnc-KIFAP3-2	lnc-KIFAP3-2:2	ENSG00000231407.1	RP11-576I22.2	GORAB	NA	chr1:170501263-170511141	inter
LNCA_21_P0009209	5.3799515	P	5.461749	P	0.944879657175576	0	lncRNA	TCONS_00025268	NA	NA	NA	NA	XLOC_012073	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012073), lincRNA [TCONS_00025268]"	chr17:1244124-1244183	hs|17p13.3	Agilent_HUMAN_G3V2	TCONS_00025268	TCONS_00025268	chr17	  1244124	  1244183	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32298_PI429285431	4.194654	P	4.4143887	P	0.85872333422511	0	lncRNA	33981-1_{1..692}	n338874|AF090096|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1300|NULL|-0.9839500|-0.2751838	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338874|AF090096|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1300|NULL|-0.9839500|-0.2751838	chr2	 70889264	 70889955	+	NA	NA	NA	NA	ADD2	NA	chr2:70889216-70899954	inner
CUST_2175_PI429285431	4.7705264	P	5.022456	P	0.839772470793122	0	lncRNA	2166-1_{1..975}	"transcript_id ""ENST00000602471.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602471.1"" | genecode_v17"	chr5	 66475441	 66476415	-	ENSG00000270107.1	ENST00000602471.1	CTD-2306M10.1	CTD-2306M10.1-001	CD180	NA	chr5:66478103-66486415	inter
CUST_33005_PI429285431	0.89278847	A	0.90530425	A	0.991362244019438	0	lncRNA	34620-1_{1..1649}	n339687|AF116657|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2132|NULL|1.4109400|-0.2221675	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339687|AF116657|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2132|NULL|1.4109400|-0.2221675	chr3	172019443	172021091	-	NA	NA	NA	NA	FNDC3B	NA	chr3:172009443-172030842	inner
CUST_27861_PI429285431	3.8300567	P	4.0934772	P	0.833110346436937	0	lncRNA	29454-1_{1..254}	n325097|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328213|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328213|-1.2322600|-0.0551033	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325097|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328213|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328213|-1.2322600|-0.0551033	chr2	239496915	239497168	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10524_PI429285431	0.92122376	A	1.1165807	A	0.873356790273667	0	lncRNA	12052-1_{1..925}	lnc-KLRB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLRB1-1:1	chr12	  9800437	  9801361	-	lnc-KLRB1-1	lnc-KLRB1-1:1	XLOC_010012	linc-KLRB1	NA	NA	NA	inter
CUST_30600_PI429285431	3.9874725	P	3.2864468	A	1.6256601630299	0	lncRNA	32382-1_{1..271}	n335897|X64245|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322683|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322683|1.6376800|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335897|X64245|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322683|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322683|1.6376800|-1.0000000	chr11	  8251819	  8252089	-	NA	NA	NA	NA	LMO1	NA	chr11:8245857-8262090	inter
CUST_30178_PI429285431	3.5418746	P	3.8533564	P	0.805813678377019	0	lncRNA	31952-1_{1..310}	n334876|AJ421673|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247905|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247905|-1.0466000|-0.2127834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334876|AJ421673|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247905|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247905|-1.0466000|-0.2127834	chrX	 49969145	 49969454	+	NA	NA	NA	NA	CCNB3	NA	chrX:50027540-50038245	inner
CUST_42462_PI429285431	2.7063682	A	2.8841531	A	0.884059330911362	0	lncRNA	45204-1_{1..136}	ENST00000364259 ncrna:snoRNA chromosome:GRCh37:1:154232203:154232338:1 gene:ENSG00000201129 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364259 ncrna:snoRNA chromosome:GRCh37:1:154232203:154232338:1 gene:ENSG00000201129 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	154232203	154232338	+	ENSG00000201129	ENST00000364259	NA	NA	UBAP2L	NA	chr1:154222203-154242338	inner
CUST_48400_PI429285431	3.240021	P	2.3958561	A	1.79522528380434	0	lncRNA	52253-1_{1..1526}	hg19_lincRNAsTranscripts_TCONS_l2_00000543 range=chr1:120905764-120907438 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000543 range=chr1:120905764-120907438 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	120905764	120907289	+	NA	NA	NA	NA	LOC100132314	NA	chr1:120895764-120905159	inter
CUST_46369_PI429285431	6.2707734	P	4.9297028	P	2.53339247899116	0	lncRNA	50589-3_{6001..6838}	"gi|258613864|ref|NR_028467.1| Homo sapiens ataxin 3 (ATXN3), transcript variant z, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|258613864|ref|NR_028467.1| Homo sapiens ataxin 3 (ATXN3), transcript variant z, non-coding RNA"	Chr14	 92530896	 92531733	-	4287	NR_028467.1	NA	NA	NA	"hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_47903_PI429285431	6.1877522	P	6.8640566	P	0.625766182485931	0	lncRNA	51796-2_{3001..5063}	"gi|410171874|ref|XR_171443.1| PREDICTED: Homo sapiens uncharacterized LOC101060650 (LOC101060650), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171874|ref|XR_171443.1| PREDICTED: Homo sapiens uncharacterized LOC101060650 (LOC101060650), misc_RNA"	NA	NA	NA	NA	NA	XR_171443.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20"	NA	Unknown
CUST_12695_PI429285431	1.9770511	A	1.5953715	A	1.30285777290119	0	lncRNA	14313-1_{1..3000}	lnc-GNA12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNA12-2:1	chr7	  2762138	  2765137	-	lnc-GNA12-2	lnc-GNA12-2:1	XLOC_006335	linc-C7orf27-3	AMZ1	"hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-58.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.71chr7:2752138-2755069"	NA	inter
CUST_34078_PI429285431	0.8886064	A	0.8827772	A	1.00404866734398	0	lncRNA	35607-1_{1..239}	n340902|AJ459866|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3367|NULL|-1.0815000|-0.3558395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340902|AJ459866|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3367|NULL|-1.0815000|-0.3558395	chr6	 27880097	 27880335	-	NA	NA	NA	NA	OR2B2	NA	chr6:27878963-27880174	inner
LNCA_21_P0002754	0.8814153	A	0.88311446	A	0.99882292533316	0	lncRNA	ENST00000461528	NA	NA	NA	NA	XLOC_002715	NA	ENST00000461528	NA	NA	"BROAD Institute lincRNA (XLOC_002715), lincRNA [TCONS_00005547]"	chr3:78343084-78343143	hs|3p12.3	Agilent_HUMAN_G3V2	ENST00000461528	ENST00000461528	chr3	 78343084	 78343143	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004845	0.881469	A	0.9277219	A	0.968448408320968	0	lncRNA	TCONS_00011705	NA	NA	NA	NA	XLOC_005183	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005183), lincRNA [TCONS_00011705]"	chr6:14661853-14662493	hs|6p23	Agilent_HUMAN_G3V2	TCONS_00011705	TCONS_00011705	chr6	 14661853	 14662493	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20463_PI429285431	0.8791815	A	0.8802431	A	0.99926442562069	0	lncRNA	22107-1_{1..445}	lnc-TMEM114-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM114-3:1	chr16	  7944255	  7944699	-	lnc-TMEM114-3	lnc-TMEM114-3:1	ENSG00000260289.1	CTD-2535I10.1	NA	NA	NA	inter
CUST_25673_PI429285431	5.4185677	P	5.6747108	P	0.837323429812871	0	lncRNA	27202-1_{1..557}	lnc-IRX3-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IRX3-5:2	chr16	 54972297	 54972853	-	lnc-IRX3-5	lnc-IRX3-5:2	ENSG00000259725.1	CTD-3032H12.1	IRX5	NA	chr16:54965111-54968397	inter
CUST_16057_PI429285431	11.675839	P	11.278971	P	1.31664644941778	0	lncRNA	17758-1_{1..392}	lnc-ADAMTS17-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ADAMTS17-1:5	chr15	100890127	100890518	-	lnc-ADAMTS17-1	lnc-ADAMTS17-1:5	XLOC_011609	linc-ADAMTS17	ADAMTS17	NA	chr15:100880127-100882183	inter
CUST_5370_PI429285431	6.57414	P	6.3100104	P	1.20091130275337	0	lncRNA	5307-1_{1..630}	"transcript_id ""ENST00000559673.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559673.1"" | genecode_v17"	chr15	101402054	101402683	+	ENSG00000259604.1	ENST00000559673.1	RP11-66B24.1	RP11-66B24.1-003	NA	NA	NA	inter
CUST_20453_PI429285431	0.8783172	A	1.3340285	A	0.729150586293896	0	lncRNA	22097-1_{1..547}	lnc-orphan.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-orphan.1-1:1	chr12	 50556623	 50557169	+	lnc-orphan.1-1	lnc-orphan.1-1:1	ENSG00000257291.1	RP11-411N4.1	CERS5	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.62;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90chr12:50546623-50561097"	NA	inner
LNCA_21_P0002357	3.6410158	P	4.0105786	P	0.774017022407392	0	lncRNA	TCONS_00004033	NA	NA	NA	NA	XLOC_001871	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001871), lincRNA [TCONS_00004033]"	chr2:220782621-220805415	hs|2q35	Agilent_HUMAN_G3V2	TCONS_00004033	TCONS_00004033	chr2	220782621	220805415	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4125_PI429285431	1.2802762	A	1.050028	A	1.17303674009389	0	lncRNA	4085-1_{1..455}	"transcript_id ""ENST00000529922.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000529922.1"" | genecode_v17"	chr11	134584436	134584890	+	ENSG00000255344.1	ENST00000529922.1	RP11-469N6.2	RP11-469N6.2-001	NA	NA	NA	inter
CUST_9106_PI429285431	1.4736323	A	0.8783881	A	1.51072827967302	0	lncRNA	10628-1_{1..3000}	lnc-RP1L1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,"	>lnc-RP1L1-5:3	chr8	  9757574	  9760573	-	lnc-RP1L1-5	lnc-RP1L1-5:3	ENSG00000253230	RP11-403C10.2	NA	NA	NA	inter
CUST_50797_PI429285431	1.6101813	A	3.0561118	P	0.367055341007162	0	lncRNA	54451-1_{1..459}	hg19_lincRNAsTranscripts_TCONS_l2_00004426 range=chr11:17662726-17663798 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004426 range=chr11:17662726-17663798 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 17662726	 17663184	+	NA	NA	NA	NA	OTOG	NA	chr11:17652726-17667491	inter
CUST_32367_PI429285431	4.888977	P	5.525395	P	0.643308207407294	0	lncRNA	34045-1_{1..3000}	n338955|AK160385|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1383|NULL|1.2464900|-0.1769585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338955|AK160385|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1383|NULL|1.2464900|-0.1769585	chr19	 56104725	 56107724	-	NA	NA	NA	NA	FIZ1	NA	chr19:56102737-56110893	inner
CUST_46303_PI429285431	3.1062324	P	2.2267466	A	1.83971947841054	0	lncRNA	50534-1_{1..1819}	"gi|283837915|ref|NR_033240.1| Homo sapiens uncharacterized LOC100129794 (LOC100129794), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|283837915|ref|NR_033240.1| Homo sapiens uncharacterized LOC100129794 (LOC100129794), non-coding RNA"	Chr14	 37641231	 37643049	+	100129794	NR_033240.1	NA	NA	NA	"hg19_refFlat_SLC25A21:range=chr14:37147689-376415555'pad=0,hg19_refFlat_SLC25A21:range=chr14:37147689-376415555'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10;hg19_refFlat_SLC25A21:range=chr14:37149863-376415555'pad=0,hg19_refFlat_SLC25A21:range=chr14:37149863-376415555'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10"	NA	inter
CUST_17729_PI429285431	2.5703065	A	3.0136669	P	0.735419634620695	0	lncRNA	19460-1_{1..800}	lnc-ARSI-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARSI-1:1	chr5	149720089	149720888	-	lnc-ARSI-1	lnc-ARSI-1:1	XLOC_005051	linc-ARSI	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20"	NA	inter
CUST_17871_PI429285431	3.8653798	P	4.4860506	P	0.650368460054252	0	lncRNA	19608-1_{1..898}	lnc-SMARCAL1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMARCAL1-2:5	chr2	217393993	217394890	+	lnc-SMARCAL1-2	lnc-SMARCAL1-2:5	XLOC_001856	linc-IGFBP2-3	NA	NA	NA	inter
CUST_6186_PI429285431	1.1339858	A	0.8944935	A	1.18057713044863	0	lncRNA	6110-1_{1..598}	"transcript_id ""ENST00000581198.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581198.1"" | genecode_v17"	chr18	 51094853	 51095450	+	ENSG00000263438.1	ENST00000581198.1	RP11-202D1.3	RP11-202D1.3-002	NA	NA	NA	inter
CUST_15943_PI429285431	5.303588	P	5.22102	P	1.05890121027066	0	lncRNA	17640-1_{1..622}	lnc-C1orf201-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf201-2:1	chr1	 24828863	 24829484	-	lnc-C1orf201-2	lnc-C1orf201-2:1	XLOC_000743	linc-C1orf201-1	RCAN3	NA	chr1:24829387-24839143	inner
CUST_40246_PI429285431	3.5938818	P	1.8946881	A	3.24719427141714	0	lncRNA	41062-2_{3001..3102}	n408153|NR_028132|lncRNA|Homosapiens||RefGeneNoncode|NR_028132||2.6412800|-0.4455992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408153|NR_028132|lncRNA|Homosapiens||RefGeneNoncode|NR_028132||2.6412800|-0.4455992	chr14	 35182587	 35182688	-	NA	NA	NA	NA	CFL2	NA	chr14:35169587-35184029	inter
CUST_35567_PI429285431	12.071193	P	11.613861	P	1.37300035642262	0	lncRNA	36981-1_{1..855}	n342697|BC023982|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5199|NULL|-0.8963390|-0.2517975	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342697|BC023982|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5199|NULL|-0.8963390|-0.2517975	chr5	139554735	139555589	+	NA	NA	NA	NA	C5orf32	NA	chr5:139554653-139623374	inner
LNCA_21_P0001777	3.7053404	P	2.35855	A	2.54345646400677	0	lncRNA	XR_109953	XR_109953	XR_109953	NA	Hs.434326	LOC100507360	uncharacterized LOC100507360	NA	THC2621419	NA	"PREDICTED: Homo sapiens hypothetical LOC100507360 (LOC100507360), miscRNA [XR_109953]"	chr2:88931031-88931090	hs|2p11.2	Agilent_HUMAN_G3V2	XR_109953	XR_109953	chr2	 88931031	 88931090	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_606_PI429285431	0.91502225	A	1.1348823	A	0.858648726431513	0	lncRNA	598-1_{1..423}	"transcript_id ""ENST00000423963.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423963.1"" | genecode_v17"	chr1	235092978	235093400	+	ENSG00000237520.1	ENST00000423963.1	RP11-443B7.2	RP11-443B7.2-001	NA	NA	NA	inter
CUST_1478_PI429285431	4.6619806	P	5.1744184	P	0.701036856510178	0	lncRNA	1465-1_{1..529}	"transcript_id ""ENST00000465880.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000465880.1"" | genecode_v17"	chr3	142850116	142850644	+	ENSG00000241679.2	ENST00000465880.1	RP11-80H8.4	RP11-80H8.4-002	CHST2	NA	chr3:142840116-142841812	inter
CUST_24951_PI429285431	1.6722354	A	2.5726721	A	0.535724544309985	0	lncRNA	26490-1_{1..489}	lnc-MLH3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MLH3-1:1	chr14	 75474899	 75475387	-	lnc-MLH3-1	lnc-MLH3-1:1	ENSG00000258646.1	RP11-950C14.3	MLH3	"hg19_refFlat_EIF2B2:range=chr14:75469694-754758915'pad=0,hg19_refFlat_EIF2B2:range=chr14:75469694-754758915'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30chr14:75480467-75485184"	NA	inner
CUST_30707_PI429285431	2.5727456	A	3.2792048	P	0.612822341805395	0	lncRNA	32489-1_{1..389}	n336216|X94063|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324825|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324825|2.5409800|-0.0440943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336216|X94063|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324825|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324825|2.5409800|-0.0440943	chr14	107034727	107035115	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40732_PI429285431	4.8917904	P	5.5406	P	0.637806364922388	0	lncRNA	41466-1_{1..2334}	n410435|NR_037566|lncRNA|Homosapiens||RefGeneNoncode|NR_037566||3.2179800|-0.1560617	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410435|NR_037566|lncRNA|Homosapiens||RefGeneNoncode|NR_037566||3.2179800|-0.1560617	chr22	 21457304	 21459637	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002602	0.88763905	A	0.89981604	A	0.991595074273836	0	lncRNA	TCONS_00004841	NA	NA	NA	NA	XLOC_001564	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001564), lincRNA [TCONS_00004841]"	chr2:89113204-89113263	hs|2p11.2	Agilent_HUMAN_G3V2	TCONS_00004841	TCONS_00004841	chr2	 89113204	 89113263	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013175	0.8862244	A	1.406252	A	0.697358491978386	0	lncRNA	TCONS_l2_00025688	NA	NA	NA	NA	XLOC_l2_013293	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013293), lincRNA [TCONS_l2_00025688]"	chr7:17052168-17052227	hs|7p21.1	Agilent_HUMAN_G3V2	TCONS_l2_00025688	TCONS_l2_00025688	chr7	 17052168	 17052227	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009918	0.885255	A	0.8959247	A	0.992631608218792	0	lncRNA	ENST00000424850	NA	NA	NA	NA	XLOC_013815	NA	ENST00000424850	NA	NA	"BROAD Institute lincRNA (XLOC_013815), lincRNA [TCONS_00028073]"	chr20:56174810-56174751	hs|20q13.31	Agilent_HUMAN_G3V2	ENST00000424850	ENST00000424850	chr20	 56174751	 56174810	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24600_PI429285431	1.8574641	A	0.9622394	A	1.85989954234131	0	lncRNA	26149-1_{1..476}	lnc-MAF-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAF-5:1	chr16	 79111808	 79112283	-	lnc-MAF-5	lnc-MAF-5:1	ENSG00000260694.1	RP11-556H2.4	WWOX	NA	chr16:79101808-79122131	inner
CUST_43985_PI429285431	0.88128126	A	0.88637173	A	0.996477772718556	0	lncRNA	48685-1_{1..3000}	"gi|383209664|ref|NR_033870.2| Homo sapiens uncharacterized LOC401014 (DKFZp686O1327), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|383209664|ref|NR_033870.2| Homo sapiens uncharacterized LOC401014 (DKFZp686O1327), non-coding RNA"	Chr2	145425534	145428533	+	401014	NR_033870.2	NA	NA	NA	NA	NA	inter
CUST_23237_PI429285431	3.1451943	P	4.0069094	P	0.550297965492654	0	lncRNA	24809-1_{1..1044}	lnc-DCAF4L2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DCAF4L2-2:3	chr8	 88746003	 88747046	-	lnc-DCAF4L2-2	lnc-DCAF4L2-2:3	ENSG00000253500.1	AF121898.3	NA	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20"	NA	inter
CUST_47842_PI429285431	1.5562108	A	2.353736	A	0.575335261969752	0	lncRNA	51749-1_{1..3000}	"gi|341916270|ref|XR_132463.1| PREDICTED: Homo sapiens putative POM121-like protein 1-like (LOC100653056), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|341916270|ref|XR_132463.1| PREDICTED: Homo sapiens putative POM121-like protein 1-like (LOC100653056), misc_RNA"	NA	NA	NA	NA	NA	XR_132463.1	NA	NA	NA	NA	NA	Unknown
CUST_28802_PI429285431	3.5845788	P	3.4165049	P	1.12355745418901	0	lncRNA	30510-1_{1..216}	n326210|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092500|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092500|-1.1972400|-0.2026737	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326210|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092500|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092500|-1.1972400|-0.2026737	chr1	221055075	221055290	+	NA	NA	NA	NA	HLX	NA	chr1:221052743-221058401	inner
CUST_17283_PI429285431	3.6106384	P	3.4014678	A	1.15602339929041	0	lncRNA	19001-1_{1..233}	lnc-ZNF516-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF516-7:1	chr18	 73839009	 73839241	-	lnc-ZNF516-7	lnc-ZNF516-7:1	XLOC_012890	linc-C18orf62-5	NA	NA	NA	inter
CUST_7352_PI429285431	5.903741	P	5.6658163	P	1.17929503855003	0	lncRNA	8998-1_{1..503}	lnc-PAIP1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PAIP1-1:5	chr5	 43602880	 43603382	-	lnc-PAIP1-1	lnc-PAIP1-1:5	ENSG00000248092	RP11-159F24.1	NNT	NA	chr5:43592880-43613039	inner
CUST_50582_PI429285431	1.9108208	A	0.92642015	A	1.97849120211585	0	lncRNA	54275-1_{1..385}	hg19_lincRNAsTranscripts_TCONS_l2_00003355 range=chr10:3274485-3286853 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003355 range=chr10:3274485-3286853 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	  3274485	  3274869	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27574_PI429285431	3.9632812	P	4.006743	P	0.970323823892574	0	lncRNA	29152-1_{1..455}	n324775|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206824|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206824|-0.9531110|-0.1609849	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324775|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206824|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206824|-0.9531110|-0.1609849	chr21	 45582932	 45583386	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38075_PI429285431	1.4650611	A	1.1353269	A	1.25678180556996	0	lncRNA	39151-1_{1..1511}	n381056|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001auz.3||7.0577600|-0.1997406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381056|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001auz.3||7.0577600|-0.1997406	chr1	 13629937	 13631447	+	NA	NA	NA	NA	PRAMEF15	NA	chr1:13632314-13645298	inter
CUST_22209_PI429285431	0.89288795	A	0.9065034	A	0.9906068827607	0	lncRNA	23808-1_{1..512}	lnc-RGS5-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RGS5-1:12	chr1	163291412	163291923	-	lnc-RGS5-1	lnc-RGS5-1:12	ENSG00000232995.2	RP11-267N12.3	NUF2	NA	chr1:163291723-163301494	inner
CUST_45804_PI429285431	11.431216	P	11.658457	P	0.854267024969894	0	lncRNA	50144-1_{1..1550}	"gi|315013588|ref|NR_037645.1| Homo sapiens thioredoxin-related transmembrane protein 2 (TMX2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315013588|ref|NR_037645.1| Homo sapiens thioredoxin-related transmembrane protein 2 (TMX2), transcript variant 4, non-coding RNA"	Chr11	 57479995	 57481544	+	51075	NR_037645.1	NA	NA	NA	NA	NA	inter
CUST_38222_PI429285431	7.77855	P	8.213313	P	0.73981527844966	0	lncRNA	39286-1_{1..2507}	n381597|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lxy.2||3.4485300|-0.2025191	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n381597|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lxy.2||3.4485300|-0.2025191	chr11	  3402190	  3404696	+	NA	NA	NA	NA	ZNF195	NA	chr11:3392190-3400452	inter
CUST_45500_PI429285431	9.187562	P	8.725705	P	1.3773135202364	0	lncRNA	49912-1_{1..1567}	"gi|377520158|ref|NR_046362.1| Homo sapiens interleukin 15 receptor, alpha (IL15RA), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|377520158|ref|NR_046362.1| Homo sapiens interleukin 15 receptor, alpha (IL15RA), transcript variant 5, non-coding RNA"	Chr10	  5994334	  5995900	-	3601	NR_046362.1	NA	NA	NA	NA	NA	inter
CUST_33963_PI429285431	2.5424116	A	2.1765351	A	1.28866431136001	0	lncRNA	35502-1_{1..482}	n340772|AJ245871|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3235|NULL|2.6274900|0.0111735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340772|AJ245871|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3235|NULL|2.6274900|0.0111735	chr5	178413539	178414020	-	NA	NA	NA	NA	GRM6	NA	chr5:178405328-178422124	inner
LNCA_19_P00327081	5.2837734	P	5.4066978	P	0.918324283002007	0	lncRNA	TCONS_l2_00001718	NA	NA	NA	NA	XLOC_l2_001273	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001273), lincRNA [TCONS_l2_00001718]"	chr1:204336742-204336683	hs|1q32.1	Agilent_HUMAN_G3V2	TCONS_l2_00001718	TCONS_l2_00001718	chr1	204336683	204336742	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_80_PI429201921	3.7304616	P	3.6312668	P	1.07117544896799	0	lncRNA	82-1_{1..2420}	TC01005046.hg.1	TCONS_l2_00002307-XLOC_l2_000631 // Broad TUCP // linc-MIA3-4 chr1:+:221681900-221684321 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:221681900-221684321	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00002307-XLOC_l2_000631	linc-MIA3-4	chr1	221681900	221684321	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18009_PI429285431	0.88793164	A	0.9310372	A	0.970563452386536	0	lncRNA	19742-1_{1..379}	lnc-CHRM2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHRM2-2:3	chr7	135864440	135864818	+	lnc-CHRM2-2	lnc-CHRM2-2:3	XLOC_006270	linc-CHRM2-2	NA	NA	NA	inter
CUST_3981_PI429285431	6.8172917	P	7.251563	P	0.740067465612431	0	lncRNA	3944-1_{1..3000}	"transcript_id ""ENST00000534336.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000534336.1"" | genecode_v17"	chr11	 65265233	 65268232	+	ENSG00000251562.3	ENST00000534336.1	MALAT1	MALAT1-001	NA	NA	NA	inter
CUST_18928_PI429285431	3.35355	P	3.9581792	P	0.657640384440177	0	lncRNA	20619-1_{1..369}	lnc-AC005493.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC005493.1-1:2	chr7	 34911111	 34911479	-	lnc-AC005493.1-1	lnc-AC005493.1-1:2	ENSG00000197085	AC005688.1	NPSR1	NA	chr7:34901111-34917944	inner
CUST_14090_PI429285431	0.8928717	A	0.9063089	A	0.990729283254614	0	lncRNA	15735-1_{1..645}	lnc-CHD2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD2-2:4	chr15	 93762883	 93763527	+	lnc-CHD2-2	lnc-CHD2-2:4	XLOC_011359	linc-MCTP2-6	NA	NA	NA	inter
CUST_30470_PI429285431	9.570076	P	9.837636	P	0.830723343418723	0	lncRNA	32250-1_{1..1408}	n335615|CR599588|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000278783|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000278783|3.9840200|-0.1043951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335615|CR599588|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000278783|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000278783|3.9840200|-0.1043951	chr19	 36119969	 36121376	+	NA	NA	NA	NA	RBM42	NA	chr19:36119980-36128587	inner
CUST_15336_PI429285431	15.2028885	P	15.496983	P	0.815584068868417	0	lncRNA	17015-1_{1..1009}	lnc-LRCH1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRCH1-2:1	chr13	 47041931	 47042939	+	lnc-LRCH1-2	lnc-LRCH1-2:1	XLOC_010383	linc-LRCH1-1	LOC731932	NA	chr13:47031931-47035198	inter
CUST_27981_PI429285431	1.2550995	M	0.903758	A	1.27574633755251	0	lncRNA	29586-1_{1..548}	n325231|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329947|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329947|-0.7938590|-0.1710563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325231|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329947|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329947|-0.7938590|-0.1710563	chr2	 98751855	 98752402	-	NA	NA	NA	NA	VWA3B	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40chr2:98741855-98764975"	NA	inner
CUST_6986_PI429285431	1.2975771	A	1.386258	A	0.940382176308518	0	lncRNA	6934-1_{1..372}	"transcript_id ""ENST00000442579.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442579.1"" | genecode_v17"	chr22	 36841445	 36841816	-	ENSG00000228719.1	ENST00000442579.1	RP5-1119A7.14	RP5-1119A7.14-001	NA	NA	NA	inter
CUST_11992_PI429285431	1.0206165	A	0.893722	A	1.09194069244887	0	lncRNA	13573-1_{1..2186}	lnc-LBH-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LBH-2:5	chr2	 30573800	 30575985	+	lnc-LBH-2	lnc-LBH-2:5	XLOC_001412	linc-LCLAT1-1	NA	NA	NA	inter
CUST_8875_PI429285431	10.399899	P	10.360007	P	1.02803686504315	0	lncRNA	10412-1_{1..2187}	lnc-KLRG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-KLRG1-1:1	chr12	  9218752	  9220938	+	lnc-KLRG1-1	lnc-KLRG1-1:1	ENSG00000245105	RP11-436I9.2	A2M	NA	chr12:9220304-9230651	inner
CUST_24860_PI429285431	2.235535	A	3.1529026	P	0.529474239638139	0	lncRNA	26400-1_{1..548}	lnc-SLC22A18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC22A18-1:1	chr11	  2966434	  2966981	+	lnc-SLC22A18-1	lnc-SLC22A18-1:1	ENSG00000224636.2	AC131971.3	NAP1L4	NA	chr11:2965660-2976753	inner
CUST_11463_PI429285431	4.287082	P	3.5137093	P	1.70926098831689	0	lncRNA	13028-1_{1..795}	lnc-PPP1R26-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PPP1R26-1:1	chr9	138363923	138364717	+	lnc-PPP1R26-1	lnc-PPP1R26-1:1	XLOC_007608	linc-KIAA0649-1	KIAA0649	NA	chr9:138371648-138374095	inter
CUST_20904_PI429285431	0.87276995	A	0.8774998	A	0.996726886162483	0	lncRNA	22535-1_{1..2145}	lnc-EZH2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EZH2-4:1	chr7	146794524	146796668	-	lnc-EZH2-4	lnc-EZH2-4:1	ENSG00000236795.1	AC006004.1	CNTNAP2	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-26.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60chr7:146784524-146804701"	NA	inner
CUST_14782_PI429285431	0.8976033	A	1.4885209	A	0.663920498145136	0	lncRNA	16443-1_{1..748}	lnc-ALX3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALX3-3:1	chr1	110752233	110752980	-	lnc-ALX3-3	lnc-ALX3-3:1	XLOC_000956	linc-ALX3-1	KCNC4	NA	chr1:110753336-110762609	inter
LNCA_21_P0004175	0.91869545	A	0.8791719	A	1.02777434815083	0	lncRNA	ENST00000514240	NA	NA	NA	NA	XLOC_004969	NA	ENST00000514240	NA	NA	"BROAD Institute lincRNA (XLOC_004969), lincRNA [TCONS_00009764]"	chr5:119669016-119668957	hs|5q23.1	Agilent_HUMAN_G3V2	ENST00000514240	ENST00000514240	chr5	119668957	119669016	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003076	2.2079444	A	2.125303	A	1.05895508536126	0	lncRNA	TCONS_00006344	NA	NA	NA	NA	XLOC_002960	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002960), lincRNA [TCONS_00006344]"	chr3:186212761-186212820	hs|3q27.3	Agilent_HUMAN_G3V2	TCONS_00006344	TCONS_00006344	chr3	186212761	186212820	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34955_PI429285431	4.134682	P	6.5086536	P	0.192913819426817	0	lncRNA	36372-1_{1..561}	n341873|M31157|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4353|NULL|-1.2665300|-0.5087521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341873|M31157|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4353|NULL|-1.2665300|-0.5087521	chr12	 28114371	 28114931	-	NA	NA	NA	NA	PTHLH	NA	chr12:28111017-28124916	inner
CUST_31739_PI429285431	3.7290044	P	4.260803	P	0.691691867841488	0	lncRNA	33480-1_{1..2283}	n338276|AK124305|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|669|NULL|-0.8831390|-0.1645896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338276|AK124305|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|669|NULL|-0.8831390|-0.1645896	chr19	  3614407	  3616689	+	NA	NA	NA	NA	TBXA2R	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-55.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0,hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-61.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_CACTIN:range=chr19:3611921-36267605'pad=0,hg19_refFlat_CACTIN:range=chr19:3611921-36267605'pad=0 3'pad=0 strand=- repeatMasking=none,-96.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr19:3604407-3606831"	NA	inner
CUST_10706_PI429285431	3.3068743	P	3.6216223	P	0.803991414142941	0	lncRNA	12242-1_{1..558}	lnc-SCNN1D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCNN1D-1:1	chr1	  1214711	  1215268	+	lnc-SCNN1D-1	lnc-SCNN1D-1:1	XLOC_000015	linc-SCNN1D	UBE2J2	NA	chr1:1204711-1209234	inter
CUST_48709_PI429285431	1.4951987	A	0.9166461	A	1.49335027639647	0	lncRNA	52551-1_{1..491}	hg19_lincRNAsTranscripts_TCONS_l2_00014855 range=chr2:118954636-118965745 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014855 range=chr2:118954636-118965745 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	118954636	118955126	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37969_PI429285431	0.90671945	A	0.9080377	A	0.99908667606366	0	lncRNA	39057-1_{1..1203}	n346519|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2069|NULL|-1.4486900|-0.3090548	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346519|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2069|NULL|-1.4486900|-0.3090548	chr15	 95820195	 95821397	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20314_PI429285431	4.808026	P	4.542899	P	1.20174183383412	0	lncRNA	21957-1_{1..455}	lnc-AE000662.92.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AE000662.92.1-2:1	chr14	 22887328	 22887782	+	lnc-AE000662.92.1-2	lnc-AE000662.92.1-2:1	ENSG00000259042.1	AE000661.50	NA	NA	NA	inter
CUST_475_PI429285431	2.8848774	A	2.3579538	A	1.44085344434194	0	lncRNA	466-1_{1..418}	"transcript_id ""ENST00000457405.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457405.1"" | genecode_v17"	chr1	168732603	168733020	-	ENSG00000235736.1	ENST00000457405.1	RP1-10C16.1	RP1-10C16.1-001	NA	NA	NA	inter
CUST_5433_PI429285431	0.8995863	A	1.4392599	A	0.687926530191985	0	lncRNA	5367-1_{1..566}	"transcript_id ""ENST00000576944.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000576944.1"" | genecode_v17"	chr16	 13824111	 13824676	-	ENSG00000262267.1	ENST00000576944.1	U95743.1	U95743.1-003	NA	NA	NA	inter
CUST_46814_PI429285431	8.159092	P	7.612005	P	1.46113248773718	0	lncRNA	50957-2_{3001..6000}	"gi|383872679|ref|NR_047559.1| Homo sapiens IKAROS family zinc finger 3 (Aiolos) (IKZF3), transcript variant 14, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|383872679|ref|NR_047559.1| Homo sapiens IKAROS family zinc finger 3 (Aiolos) (IKZF3), transcript variant 14, non-coding RNA"	Chr17	 37916968	 37919967	-	22806	NR_047559.1	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.81;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.81;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.21;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20"	NA	inter
CUST_40717_PI429285431	3.606278	P	3.651919	P	0.968859250011265	0	lncRNA	41454-1_{1..3000}	n410285|NR_037177_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_6||-1.0868600|-0.2881875	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410285|NR_037177_6|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_6||-1.0868600|-0.2881875	chr6	  4292680	  4295679	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001067	3.5052881	P	3.5764346	P	0.951881243797901	0	lncRNA	ENST00000435108	NA	NA	NA	NA	XLOC_000579	NA	ENST00000435108	NA	NA	"BROAD Institute lincRNA (XLOC_000579), lincRNA [TCONS_00000408]"	chr1:223318237-223318296	hs|1q41	Agilent_HUMAN_G3V2	ENST00000435108	ENST00000435108	chr1	223318237	223318296	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34864_PI429285431	6.0669003	P	6.220513	P	0.898996435119045	0	lncRNA	36290-1_{1..2791}	n341773|BC033399|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4250|NULL|-0.9706800|-0.3138778	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341773|BC033399|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4250|NULL|-0.9706800|-0.3138778	chr9	122697337	122700127	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004732	0.8993958	A	0.9167826	A	0.988020718414516	0	lncRNA	ENST00000456440	NA	NA	NA	NA	XLOC_005616	NA	ENST00000456440	NA	NA	"BROAD Institute lincRNA (XLOC_005616), lincRNA [TCONS_00011457]"	chr6:14391521-14391462	hs|6p23	Agilent_HUMAN_G3V2	ENST00000456440	ENST00000456440	chr6	 14391462	 14391521	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29620_PI429285431	9.831638	P	10.01663	P	0.879653953746175	0	lncRNA	31381-1_{1..263}	n333179|AF424051|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079422|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079422|-1.1013900|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333179|AF424051|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079422|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079422|-1.1013900|-1.0000000	chr4	154605404	154605666	+	NA	NA	NA	NA	TLR2	NA	chr4:154605441-154619209	inner
CUST_1297_PI429285431	0.8999689	A	1.088606	A	0.87743423351331	0	lncRNA	1287-1_{1..938}	"transcript_id ""ENST00000435368.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435368.1"" | genecode_v17"	chr3	  8406393	  8407330	-	ENSG00000231401.1	ENST00000435368.1	AC023481.1	AC023481.1-001	NA	NA	NA	inter
CUST_36647_PI429285431	0.88133216	A	0.8910653	A	0.993276207980456	0	lncRNA	37837-1_{1..784}	n345141|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_690|NULL|-1.6642900|-0.4003387	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345141|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_690|NULL|-1.6642900|-0.4003387	chr11	 33212345	 33213128	-	NA	NA	NA	NA	HIPK3	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10chr11:33211461-33223144"	NA	inter
CUST_5741_PI429285431	0.8950429	A	0.8978385	A	0.998064113991207	0	lncRNA	5665-1_{1..467}	"transcript_id ""ENST00000579752.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579752.1"" | genecode_v17"	chr17	 15008554	 15009020	-	ENSG00000265163.1	ENST00000579752.1	RP11-924A14.1	RP11-924A14.1-001	NA	NA	NA	inter
CUST_39840_PI429285431	10.044033	P	10.152848	P	0.927349454898462	0	lncRNA	40743-1_{1..1756}	n406455|NR_023346|lncRNA|Homosapiens||RefGeneNoncode|NR_023346||1.7112300|-0.2352938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406455|NR_023346|lncRNA|Homosapiens||RefGeneNoncode|NR_023346||1.7112300|-0.2352938	chr17	  4046461	  4048216	+	NA	NA	NA	NA	ZZEF1	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.82;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70chr17:4036461-4046253"	NA	inner
CUST_7430_PI429285431	0.8788159	A	0.8863397	A	0.994798474272223	0	lncRNA	9072-1_{1..542}	lnc-ALX4-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALX4-4:4	chr11	 43942193	 43942734	-	lnc-ALX4-4	lnc-ALX4-4:4	ENSG00000244926	ENSG00000244926.2	ALKBH3	NA	chr11:43932193-43941825	inter
LNCA_19_P00316225	2.6427639	A	3.8875113	P	0.421981775955024	0	lncRNA	XR_110015	XR_110015	XR_110015	NA	Hs.729396	LOC100506924	NA	ENST00000497310	THC2581494	NA	"PREDICTED: Homo sapiens hypothetical LOC100506924 (LOC100506924), miscRNA [XR_110015]"	chr3:58613026-58612967	hs|3p14.2	Agilent_HUMAN_G3V2	XR_110015	XR_110015	chr3	 58612967	 58613026	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50122_PI429285431	0.8926	A	1.1089545	A	0.860737661312113	0	lncRNA	53848-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00029375 range=chr9:69494689-69650121 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029375 range=chr9:69494689-69650121 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 69500689	 69503688	-	NA	NA	NA	NA	LOC100132154	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_GXYLT1:range=chr12:42481588-425384485'pad=0,hg19_refFlat_GXYLT1:range=chr12:42481588-425384485'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00chr9:69484689-69660121"	NA	inter
CUST_48223_PI429285431	6.234681	P	6.1114087	P	1.0892025763626	0	lncRNA	52086-1_{1..608}	hg19_lincRNAsTranscripts_TCONS_l2_00001489 range=chr1:142804981-142888877 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001489 range=chr1:142804981-142888877 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	142804981	142805588	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42040_PI429285431	1.5040467	A	1.9814818	A	0.718253438743147	0	lncRNA	43920-1_{1..91}	ENST00000577653 ncrna:miRNA chromosome:GRCh37:X:122598936:122599026:1 gene:ENSG00000265082 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577653 ncrna:miRNA chromosome:GRCh37:X:122598936:122599026:1 gene:ENSG00000265082 gene_biotype:miRNA transcript_biotype:miRNA	chrX	122598936	122599026	+	ENSG00000265082	ENST00000577653	NA	NA	GRIA3	NA	chrX:122588936-122609026	inner
CUST_8909_PI429285431	1.2834387	A	0.87957704	A	1.32304456710695	0	lncRNA	10444-1_{1..2740}	lnc-FAM133B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM133B-1:1	chr7	 92320594	 92323333	-	lnc-FAM133B-1	lnc-FAM133B-1:1	ENSG00000245682	ENST00000500212	CDK6	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80chr7:92310594-92332159"	NA	inner
CUST_32230_PI429285431	7.6616626	P	8.097841	P	0.739089816018763	0	lncRNA	33922-1_{1..283}	n338803|AF086466|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1226|NULL|-1.0826700|-0.2116891	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338803|AF086466|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1226|NULL|-1.0826700|-0.2116891	chr19	 49429427	 49429709	+	NA	NA	NA	NA	NUCB1	"hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-31.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70chr19:49419427-49426540"	NA	inter
LNCA_21_P0014322	0.87873524	A	1.8852267	A	0.497755285277512	0	lncRNA	XR_109281	XR_109281	XR_109281	NA	Hs.569669	LOC100506914	uncharacterized LOC100506914	NA	THC2492118	NA	"PREDICTED: Homo sapiens hypothetical LOC100506914 (LOC100506914), miscRNA [XR_109281]"	chr16:30116145-30116204	hs|16p11.2	Agilent_HUMAN_G3V2	XR_109281	XR_109281	chr16	 30116145	 30116204	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3767_PI429285431	1.6837444	A	1.0883094	A	1.51092809045016	0	lncRNA	3735-1_{1..462}	"transcript_id ""ENST00000414903.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414903.1"" | genecode_v17"	chr10	 92214455	 92214916	+	ENSG00000224750.2	ENST00000414903.1	RP11-94M14.2	RP11-94M14.2-004	NA	NA	NA	inter
CUST_46040_PI429285431	8.110681	P	8.10351	P	1.00498293215029	0	lncRNA	50318-1_{1..3000}	"gi|378744191|ref|NR_046389.1| Homo sapiens acid-sensing (proton-gated) ion channel 1 (ASIC1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378744191|ref|NR_046389.1| Homo sapiens acid-sensing (proton-gated) ion channel 1 (ASIC1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_046389.1	NA	NA	NA	NA	NA	Unknown
CUST_48257_PI429285431	4.2771	P	4.8387003	P	0.67755017864746	0	lncRNA	52120-1_{1..565}	hg19_lincRNAsTranscripts_TCONS_l2_00001955 range=chr1:999898-1001821 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001955 range=chr1:999898-1001821 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	   999898	  1000462	+	NA	NA	NA	NA	AGRN	NA	chr1:989898-991492	inter
CUST_5935_PI429285431	5.6457424	P	5.7803726	P	0.91090329170993	0	lncRNA	5864-1_{1..414}	"transcript_id ""ENST00000580729.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580729.1"" | genecode_v17"	chr17	 65989996	 65990409	-	ENSG00000266176.1	ENST00000580729.1	RP11-855A2.5	RP11-855A2.5-001	BPTF	NA	chr17:65979996-65980494	inter
CUST_41276_PI429285431	2.116265	A	3.2721238	P	0.44879894820623	0	lncRNA	42250-1_{1..124}	ENST00000384837 ncrna:miRNA chromosome:GRCh37:14:101348220:101348343:1 gene:ENSG00000207569 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384837 ncrna:miRNA chromosome:GRCh37:14:101348220:101348343:1 gene:ENSG00000207569 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101348220	101348343	+	ENSG00000207569	ENST00000384837	NA	NA	RTL1	"hg19_refFlat_RTL1:range=chr14:101347049-1013511255'pad=0,hg19_refFlat_RTL1:range=chr14:101347049-1013511255'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20chr14:101346992-101351184"	NA	inter
CUST_5339_PI429285431	1.017426	A	2.0271888	A	0.496627893838859	0	lncRNA	5277-1_{1..1057}	"transcript_id ""ENST00000554412.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554412.2"" | genecode_v17"	chr15	 96006821	 96007877	-	ENSG00000258489.3	ENST00000554412.2	RP11-398J10.2	RP11-398J10.2-001	NA	NA	NA	inter
CUST_44353_PI429285431	1.1161575	A	2.2437377	A	0.457682742672389	0	lncRNA	48974-2_{3001..3569}	"gi|372461122|ref|NR_045511.2| Homo sapiens G protein-coupled receptor 78 (GPR78), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372461122|ref|NR_045511.2| Homo sapiens G protein-coupled receptor 78 (GPR78), transcript variant 2, non-coding RNA"	Chr4	  8584964	  8585532	+	27201	NR_045511.2	NA	NA	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40"	NA	inter
LNCA_21_P0005117	10.478568	P	10.065674	P	1.33135379028535	0	lncRNA	THC2673986	NA	NA	NA	NA	XLOC_005355	NA	NA	THC2673986	NA	"BROAD Institute lincRNA (XLOC_005355), lincRNA [TCONS_00012521]"	chr6:077485315-077485374	hs|6q14.1	Agilent_HUMAN_G3V2	THC2673986	THC2673986	chr6	 77485315	 77485374	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003899	0.8773132	A	0.87894976	A	0.998866266212496	0	lncRNA	TCONS_00009086	NA	NA	NA	NA	XLOC_004019	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004019), lincRNA [TCONS_00009086]"	chr4:95676005-95668941	hs|4q22.3	Agilent_HUMAN_G3V2	TCONS_00009086	TCONS_00009086	chr4	 95668941	 95676005	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_186_PI429285431	6.262167	P	5.7845755	P	1.39241716105876	0	lncRNA	176-1_{1..1445}	"transcript_id ""ENST00000577528.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577528.1"" | genecode_v17"	chr1	 24865292	 24866736	-	ENSG00000264443.1	ENST00000577528.1	RP4-594I10.3	RP4-594I10.3-001	RCAN3	NA	chr1:24855292-24862428	inter
LNCA_21_P0003573	0.87753314	A	0.8788926	A	0.999058137964669	0	lncRNA	TCONS_00007988	NA	NA	NA	NA	XLOC_003455	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003455), lincRNA [TCONS_00007988]"	chr4:11339007-11352918	hs|4p15.33	Agilent_HUMAN_G3V2	TCONS_00007988	TCONS_00007988	chr4	 11339007	 11352918	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10785_PI429285431	5.524068	P	5.6273913	P	0.930886189994783	0	lncRNA	12321-1_{1..275}	lnc-PPP2R2C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP2R2C-1:1	chr4	  6308994	  6309268	-	lnc-PPP2R2C-1	lnc-PPP2R2C-1:1	XLOC_003867	linc-JAKMIP1	WFS1	NA	chr4:6298994-6304992	inter
CUST_3973_PI429285431	6.03136	P	6.953875	P	0.527588491515345	0	lncRNA	3943-1_{1..3000}	"transcript_id ""ENST00000501122.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000501122.2"" | genecode_v17"	chr11	 65190269	 65193268	+	ENSG00000245532.3	ENST00000501122.2	NEAT1	NEAT1-001	FRMD8	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr11:65180269-65180996"	NA	inter
CUST_18032_PI429285431	6.7514563	P	6.35307	P	1.31803282459034	0	lncRNA	19767-1_{1..229}	lnc-SYNGR1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYNGR1-2:1	chr22	 39673933	 39674161	+	lnc-SYNGR1-2	lnc-SYNGR1-2:1	XLOC_014246	linc-SYNGR1-2	NA	NA	NA	inter
CUST_13494_PI429285431	1.35283	A	1.1272869	A	1.16921731551815	0	lncRNA	15134-1_{1..872}	lnc-GPR183-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR183-3:2	chr13	100152649	100153520	-	lnc-GPR183-3	lnc-GPR183-3:2	XLOC_010707	linc-GPR183-3	TM9SF2	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00chr13:100153728-100163306"	NA	inter
CUST_2347_PI429285431	0.89445156	A	0.8959739	A	0.998945350854889	0	lncRNA	2339-1_{1..311}	"transcript_id ""ENST00000510570.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510570.1"" | genecode_v17"	chr5	123805284	123805594	+	ENSG00000250438.1	ENST00000510570.1	CTD-2308B18.2	CTD-2308B18.2-001	NA	NA	NA	inter
CUST_49896_PI429285431	3.9085438	P	3.4135334	P	1.4093309145924	0	lncRNA	53645-1_{1..1120}	hg19_lincRNAsTranscripts_TCONS_l2_00026707 range=chr7:76713121-76751687 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026707 range=chr7:76713121-76751687 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 76713121	 76714240	-	NA	NA	NA	NA	CCDC146	NA	chr7:76744671-76761687	inter
LNCA_21_P0004350	0.88052773	A	1.1363988	A	0.83748132774831	0	lncRNA	TCONS_00010232	NA	NA	NA	NA	XLOC_004700	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004700), lincRNA [TCONS_00010232]"	chr5:1041174-1041115	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00010232	TCONS_00010232	chr5	  1041115	  1041174	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24413_PI429285431	1.2288432	A	0.89091694	A	1.26393849352672	0	lncRNA	25966-1_{1..472}	lnc-DSC1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DSC1-1:3	chr18	 28981542	 28982013	-	lnc-DSC1-1	lnc-DSC1-1:3	ENSG00000266729.1	RP11-534N16.1	DSG4	"hg19_refFlat_DSG1:range=chr18:28898264-289353095'pad=0,hg19_refFlat_DSG1:range=chr18:28898264-289353095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60chr18:28971542-28991630"	NA	inner
CUST_41032_PI429285431	1.119478	A	1.2948022	A	0.885568493280367	0	lncRNA	41691-1_{1..678}	n411674|NR_040513|lncRNA|Homosapiens||RefGeneNoncode|NR_040513||-0.7670330|-0.1810233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n411674|NR_040513|lncRNA|Homosapiens||RefGeneNoncode|NR_040513||-0.7670330|-0.1810233	chr20	 58201518	 58202195	-	NA	NA	NA	NA	PHACTR3	NA	chr20:58191518-58213344	inner
CUST_14512_PI429285431	0.9915309	A	1.2222168	A	0.852229620205501	0	lncRNA	16178-1_{1..1362}	lnc-SPRY2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPRY2-2:2	chr13	 80626361	 80627722	-	lnc-SPRY2-2	lnc-SPRY2-2:2	XLOC_010669	linc-RBM26-2	NA	NA	NA	inter
CUST_22379_PI429285431	5.4394803	P	5.691151	P	0.839923186360911	0	lncRNA	23971-2_{3001..6000}	lnc-ZNF862-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:7	chr7	149497360	149500359	+	lnc-ZNF862-1	lnc-ZNF862-1:7	ENSG00000197558.7	SSPO	SSPO	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00chr7:149484360-149506170"	NA	inner
CUST_1233_PI429285431	4.0176153	P	4.427807	P	0.752523374529327	0	lncRNA	1225-1_{1..391}	"transcript_id ""ENST00000414756.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414756.1"" | genecode_v17"	chr2	216341390	216341780	+	ENSG00000228618.1	ENST00000414756.1	AC012462.3	AC012462.3-001	NA	NA	NA	inter
CUST_16699_PI429285431	0.8794524	A	0.884452	A	0.996540539127536	0	lncRNA	18404-1_{1..397}	lnc-TTC17-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC17-1:2	chr11	 43694541	 43694937	+	lnc-TTC17-1	lnc-TTC17-1:2	XLOC_009116	linc-HSD17B12-1	HSD17B12	NA	chr11:43702143-43704932	inter
CUST_695_PI429285431	6.002866	P	6.529235	P	0.694299963159576	0	lncRNA	688-1_{1..1113}	"transcript_id ""ENST00000591053.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591053.1"" | genecode_v17"	chr2	  6772592	  6773704	-	ENSG00000236172.2	ENST00000591053.1	AC097517.2	AC097517.2-034	NA	NA	NA	inter
CUST_16467_PI429285431	4.873862	P	4.7690353	P	1.07536520724219	0	lncRNA	18165-1_{1..855}	lnc-RAB40A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB40A-1:1	chrX	102792835	102793689	-	lnc-RAB40A-1	lnc-RAB40A-1:1	XLOC_008200	linc-RAB40A-1	NA	NA	NA	inter
CUST_32632_PI429285431	5.9263763	P	5.704796	P	1.16601011192737	0	lncRNA	34291-1_{1..1238}	n339256|BC038790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1688|NULL|-1.2729000|-0.2792755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339256|BC038790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1688|NULL|-1.2729000|-0.2792755	chr3	 14460407	 14461644	+	NA	NA	NA	NA	SLC6A6	NA	chr3:14450407-14471631	inner
CUST_1747_PI429285431	2.0447817	A	1.6367646	A	1.32686086754272	0	lncRNA	1733-1_{1..455}	"transcript_id ""ENST00000507579.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507579.1"" | genecode_v17"	chr4	 39135533	 39135987	+	ENSG00000249685.1	ENST00000507579.1	RP11-360F5.3	RP11-360F5.3-001	KLHL5	NA	chr4:39125533-39127853	inter
CUST_25514_PI429285431	5.3613853	P	5.447841	P	0.941833732559626	0	lncRNA	27044-1_{1..555}	lnc-PYDC2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PYDC2-4:1	chr3	191962604	191963158	+	lnc-PYDC2-4	lnc-PYDC2-4:1	ENSG00000231383.2	FGF12-AS1	FGF12	NA	chr3:191952604-191972776	inner
LNCA_21_P0014136	0.87272024	A	0.8772827	A	0.99684253901227	0	lncRNA	XR_108553	XR_108553	XR_108553	NA	Hs.599901	LOC100506024	uncharacterized LOC100506024	NA	THC2676291	NA	"PREDICTED: Homo sapiens hypothetical LOC100506024 (LOC100506024), miscRNA [XR_108553]"	chr4:25906405-25906346	hs|4p15.2	Agilent_HUMAN_G3V2	XR_108553	XR_108553	chr4	 25906346	 25906405	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18927_PI429285431	2.8034775	A	3.598725	P	0.576244307945248	0	lncRNA	20618-1_{1..1740}	lnc-MMD-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MMD-4:1	chr17	 53350871	 53352610	-	lnc-MMD-4	lnc-MMD-4:1	ENSG00000249208	AC007638.1	HLF	"hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr17:53342321-53361014"	NA	inner
CUST_25606_PI429285431	1.8207468	A	2.9556534	A	0.455364396108451	0	lncRNA	27135-1_{1..468}	lnc-FAM59A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FAM59A-1:1	chr18	 29828719	 29829186	-	lnc-FAM59A-1	lnc-FAM59A-1:1	ENSG00000263904.1	RP11-344B2.3	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80"	NA	inter
CUST_35429_PI429285431	8.811405	P	8.91139	P	0.933042692525051	0	lncRNA	36836-2_{3001..3750}	n342491|CR749370|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4985|NULL|1.2876900|-0.4102766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342491|CR749370|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4985|NULL|1.2876900|-0.4102766	chr3	 28286074	 28286823	+	NA	NA	NA	NA	CMC1	NA	chr3:28283124-28361264	inner
CUST_17543_PI429285431	0.90290827	A	1.1409224	A	0.847911660001823	0	lncRNA	19269-1_{1..264}	lnc-DCUN1D1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCUN1D1-7:1	chr3	181787863	181788126	-	lnc-DCUN1D1-7	lnc-DCUN1D1-7:1	XLOC_003346	linc-DNAJC19-4	NA	NA	NA	inter
CUST_37728_PI429285431	4.66696	P	5.170969	P	0.705144581307668	0	lncRNA	38824-2_{3001..6000}	n346231|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1781|NULL|-1.4184500|-0.2005877	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n346231|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1781|NULL|-1.4184500|-0.2005877	chr10	  5639946	  5642945	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50"	NA	inter
CUST_41959_PI429285431	4.5798388	P	4.870684	P	0.817423032606923	0	lncRNA	43738-1_{1..101}	ENST00000584466 ncrna:miRNA chromosome:GRCh37:1:159869769:159869869:-1 gene:ENSG00000266458 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584466 ncrna:miRNA chromosome:GRCh37:1:159869769:159869869:-1 gene:ENSG00000266458 gene_biotype:miRNA transcript_biotype:miRNA	chr1	159869769	159869869	-	ENSG00000266458	ENST00000584466	NA	NA	CCDC19	NA	chr1:159859769-159869906	inner
CUST_46263_PI429285431	6.1834326	P	5.8849883	P	1.22981755006232	0	lncRNA	50502-1_{1..1236}	"gi|389565505|ref|NR_047026.1| Homo sapiens long intergenic non-protein coding RNA 443 (LINC00443), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|389565505|ref|NR_047026.1| Homo sapiens long intergenic non-protein coding RNA 443 (LINC00443), non-coding RNA"	Chr13	107306228	107307463	+	100874173	NR_047026.1	NA	NA	NA	NA	NA	inter
CUST_23410_PI429285431	0.9002845	A	0.9156126	A	0.989431612715776	0	lncRNA	24978-1_{1..583}	lnc-DDX20-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DDX20-2:2	chr1	112453408	112453990	+	lnc-DDX20-2	lnc-DDX20-2:2	ENSG00000237556.1	KCND3-AS1	KCND3	NA	chr1:112443408-112463553	inner
CUST_31418_PI429285431	0.911854	A	0.92490983	A	0.990991212740658	0	lncRNA	33190-1_{1..1025}	n337884|CR617293|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|267|NULL|2.1465900|-0.2445187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337884|CR617293|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|267|NULL|2.1465900|-0.2445187	chrX	152159704	152160728	-	NA	NA	NA	NA	PNMA3	NA	chrX:152219701-152228827	inner
CUST_48844_PI429285431	1.0434023	A	1.4070673	A	0.777187714166543	0	lncRNA	52680-2_{3001..3546}	hg19_lincRNAsTranscripts_TCONS_l2_00018698 range=chr3:94654310-94871125 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018698 range=chr3:94654310-94871125 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	 94657310	 94657855	+	NA	NA	NA	NA	NA	"hg19_refFlat_WDR82:range=chr3:52291506-523123775'pad=0,hg19_refFlat_WDR82:range=chr3:52291506-523123775'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40"	NA	inter
CUST_16874_PI429285431	5.9696608	P	6.1895757	P	0.858616081980656	0	lncRNA	18581-1_{1..349}	lnc-IL4R-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL4R-1:1	chr16	 27389494	 27389842	+	lnc-IL4R-1	lnc-IL4R-1:1	XLOC_011682	linc-IL21R	NA	NA	NA	inter
CUST_13060_PI429285431	0.90634775	A	0.910329	A	0.997244211961858	0	lncRNA	14687-1_{1..800}	lnc-SPTLC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPTLC1-1:1	chr9	 94766310	 94767109	-	lnc-SPTLC1-1	lnc-SPTLC1-1:1	XLOC_007778	linc-ROR2	NA	NA	NA	inter
CUST_24557_PI429285431	0.90076804	A	1.0217124	A	0.919585510854689	0	lncRNA	26106-1_{1..567}	lnc-HNRNPA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-HNRNPA1-1:1	chr12	 54738846	 54739412	+	lnc-HNRNPA1-1	lnc-HNRNPA1-1:1	ENSG00000258344.1	RP11-968A15.8	COPZ1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50chr12:54728846-54745633"	NA	inter
CUST_15844_PI429285431	7.9190474	P	8.381592	P	0.725705143289847	0	lncRNA	17536-1_{1..219}	lnc-AC011467.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC011467.1-1:1	chr19	 23003902	 23004120	+	lnc-AC011467.1-1	lnc-AC011467.1-1:1	XLOC_013015	linc-ZNF726-8	NA	NA	NA	inter
LNCA_21_P0003679	1.1334903	A	1.9770511	A	0.557266448348743	0	lncRNA	TCONS_00008336	NA	NA	NA	NA	XLOC_003786	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003786), lincRNA [TCONS_00008336]"	chr4:175101513-175101572	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_00008336	TCONS_00008336	chr4	175101513	175101572	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45699_PI429285431	2.5485222	A	2.9275336	A	0.76896433934884	0	lncRNA	50069-2_{3001..4565}	"gi|375298721|ref|NR_046330.1| Homo sapiens tubulin, gamma complex associated protein 2 (TUBGCP2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375298721|ref|NR_046330.1| Homo sapiens tubulin, gamma complex associated protein 2 (TUBGCP2), transcript variant 4, non-coding RNA"	Chr10	135095134	135096698	-	10844	NR_046330.1	NA	NA	NA	"hg19_refFlat_ZNF511:range=chr10:135122448-1351263705'pad=0,hg19_refFlat_ZNF511:range=chr10:135122448-1351263705'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.70"	NA	inter
CUST_47683_PI429285431	1.2877239	A	0.94092137	A	1.27173892458073	0	lncRNA	51662-1_{1..3000}	"gi|385137064|ref|NR_047602.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 32, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137064|ref|NR_047602.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 32, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047602.1	NA	NA	NA	NA	NA	inter
CUST_24688_PI429285431	6.1492476	P	6.12216	P	1.0189530652557	0	lncRNA	26235-1_{1..549}	lnc-RMI1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RMI1-2:1	chr9	 86697386	 86697934	+	lnc-RMI1-2	lnc-RMI1-2:1	ENSG00000227463.1	RP11-158D2.2	NA	NA	NA	inter
CUST_51786_PI429285431	11.11508	P	10.247744	P	1.82429115433026	0	lncRNA	55335-1_{1..1049}	hg19_lincRNAsTranscripts_TCONS_l2_00012321 range=chr19:12670361-12671726 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012321 range=chr19:12670361-12671726 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 12670361	 12671409	+	NA	NA	NA	NA	ZNF490	NA	chr19:12670299-12681726	inter
CUST_4792_PI429285431	0.894158	A	2.1734598	A	0.411994847509686	0	lncRNA	4736-1_{1..2904}	"transcript_id ""ENST00000556405.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556405.1"" | genecode_v17"	chr14	 45232360	 45235263	-	ENSG00000258998.1	ENST00000556405.1	RP11-398E10.1	RP11-398E10.1-001	NA	NA	NA	inter
CUST_30488_PI429285431	11.563374	P	11.399407	P	1.12036358686465	0	lncRNA	32268-1_{1..277}	n335642|CR607758|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000286953|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000286953|-1.3457400|-0.3104096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335642|CR607758|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000286953|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000286953|-1.3457400|-0.3104096	chr14	 94517266	 94517542	-	NA	NA	NA	NA	OTUB2	NA	chr14:94507266-94515276	inner
CUST_21780_PI429285431	2.6941533	A	3.1555936	P	0.726260841449616	0	lncRNA	23390-1_{1..555}	lnc-FGF23-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FGF23-2:1	chr12	  4385225	  4385779	-	lnc-FGF23-2	lnc-FGF23-2:1	ENSG00000256164.1	RP11-264F23.3	CCND2	"hg19_refFlat_CCND2:range=chr12:4383207-44091755'pad=0,hg19_refFlat_CCND2:range=chr12:4383207-44091755'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50chr12:4382902-4395350"	NA	inner
CUST_48283_PI429285431	3.7515428	P	4.227803	P	0.718838607231166	0	lncRNA	52143-1_{1..2481}	hg19_lincRNAsTranscripts_TCONS_l2_00001053 range=chr1:16951964-16971754 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001053 range=chr1:16951964-16971754 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 16951964	 16954444	-	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-58.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20"	NA	inter
LNCA_21_P0008959	2.7938755	A	1.0801749	A	3.28001087918054	0	lncRNA	TCONS_00024437	NA	NA	NA	NA	XLOC_011758	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011758), lincRNA [TCONS_00024437]"	chr16:66930312-66930371	hs|16q22.1	Agilent_HUMAN_G3V2	TCONS_00024437	TCONS_00024437	chr16	 66930312	 66930371	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13448_PI429285431	0.8929195	A	0.8861536	A	1.00470077866573	0	lncRNA	15086-1_{1..511}	lnc-CAMK1G-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CAMK1G-3:1	chr1	209501633	209502143	+	lnc-CAMK1G-3	lnc-CAMK1G-3:1	XLOC_000547	linc-LOC642587-2	NA	NA	NA	inter
CUST_26168_PI429285431	5.9292135	P	6.3987713	P	0.722185920818519	0	lncRNA	27679-1_{1..423}	lnc-PPP4C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP4C-1:1	chr16	 30103836	 30104258	+	lnc-PPP4C-1	lnc-PPP4C-1:1	ENSG00000260453.1	RP11-455F5.2	TBX6	"hg19_refFlat_YPEL3:range=chr16:30104031-301066895'pad=0,hg19_refFlat_YPEL3:range=chr16:30104031-301066895'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_YPEL3:range=chr16:30104031-301068035'pad=0,hg19_refFlat_YPEL3:range=chr16:30104031-301068035'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20chr16:30097114-30103205"	NA	inner
CUST_47620_PI429285431	2.4798455	A	2.1582532	A	1.24970908975748	0	lncRNA	51612-2_{3001..5901}	"gi|371940886|ref|NR_045862.1| Homo sapiens armadillo repeat containing, X-linked 4 (ARMCX4), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|371940886|ref|NR_045862.1| Homo sapiens armadillo repeat containing, X-linked 4 (ARMCX4), transcript variant 5, non-coding RNA"	NW_004070883.1	   169929	   172829	+	100131755	NR_045862.1	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00808348	5.5158854	P	5.3358865	P	1.13288302151533	0	lncRNA	XR_132652	XR_132652	XR_132652	NA	NA	LOC100506694	NA	NA	THC2525976	NA	"PREDICTED: Homo sapiens hypothetical LOC100506694, transcript variant 5 (LOC100506694), miscRNA [XR_132652]"	chr19:28289104-28289163	hs|19q11	Agilent_HUMAN_G3V2	XR_132652	XR_132652	chr19	 28289104	 28289163	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37848_PI429285431	3.1746283	A	3.4102225	P	0.849335113089346	0	lncRNA	38939-1_{1..594}	n346377|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1927|NULL|-1.3449100|-0.1585905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346377|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1927|NULL|-1.3449100|-0.1585905	chr16	 18582581	 18583174	+	NA	NA	NA	NA	NOMO2	NA	chr16:18572581-18573434	inter
CUST_11754_PI429285431	0.88005286	A	0.8826172	A	0.998224113714456	0	lncRNA	13334-1_{1..321}	lnc-AC108938.5.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC108938.5.1-3:1	chr2	111103493	111103813	-	lnc-AC108938.5.1-3	lnc-AC108938.5.1-3:1	XLOC_002264	linc-NPHP1-1	NA	NA	NA	inter
CUST_39357_PI429285431	5.538884	P	5.5016236	P	1.02616334651545	0	lncRNA	40321-1_{1..929}	n386451|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lfp.1||0.5931700|-0.1724075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386451|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lfp.1||0.5931700|-0.1724075	chr7	 97503666	 97504594	-	NA	NA	NA	NA	ASNS	"hg19_refFlat_SYCP2L:range=chr6:10887360-109640395'pad=0,hg19_refFlat_SYCP2L:range=chr6:10887360-109640395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60chr7:97493666-97501854"	NA	inter
CUST_24790_PI429285431	3.422329	P	3.5647252	P	0.906013090332924	0	lncRNA	26333-1_{1..405}	lnc-FAM196A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM196A-2:1	chr10	128814187	128814591	-	lnc-FAM196A-2	lnc-FAM196A-2:1	ENSG00000232935.1	RP11-223P11.2	DOCK1	NA	chr10:128804187-128824220	inner
CUST_42658_PI429285431	0.8975297	A	0.94574386	A	0.967132753516163	0	lncRNA	45552-1_{1..73}	ENST00000584138 proj_ncrna:snoRNA chromosome:GRCh37:HG1293_PATCH:206745524:206745596:1 gene:ENSG00000263695 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584138 proj_ncrna:snoRNA chromosome:GRCh37:HG1293_PATCH:206745524:206745596:1 gene:ENSG00000263695 gene_biotype:snoRNA transcript_biotype:snoRNA	chrHG1293_PATCH	206745524	206745596	+	ENSG00000263695	ENST00000584138	NA	NA	NA	NA	NA	Unknown
CUST_36901_PI429285431	2.8544807	A	3.2021887	P	0.785831552074752	0	lncRNA	38060-2_{3001..5212}	n345373|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_922|NULL|-1.3352000|-0.3153113	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345373|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_922|NULL|-1.3352000|-0.3153113	chr19	 20970252	 20972463	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50"	NA	inter
CUST_48323_PI429285431	5.872117	P	4.703735	P	2.24759485044207	0	lncRNA	52181-1_{1..1051}	hg19_lincRNAsTranscripts_TCONS_l2_00001111 range=chr1:28446484-28447850 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001111 range=chr1:28446484-28447850 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 28446484	 28447534	-	NA	NA	NA	NA	PTAFR	NA	chr1:28447346-28457850	inter
CUST_2103_PI429285431	0.87758213	A	1.0764132	A	0.871256204480146	0	lncRNA	2094-1_{1..898}	"transcript_id ""ENST00000513955.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513955.1"" | genecode_v17"	chr5	 19035306	 19036203	-	ENSG00000251487.1	ENST00000513955.1	RP11-124N3.2	RP11-124N3.2-002	NA	NA	NA	inter
CUST_9078_PI429285431	2.846427	A	2.887372	A	0.972018043611161	0	lncRNA	10601-1_{1..3000}	lnc-THTPA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-THTPA-1:1	chr14	 24036898	 24039897	+	lnc-THTPA-1	lnc-THTPA-1:1	ENSG00000246609	ENSG00000258727.1	AP1G2	"hg19_refFlat_AP1G2:range=chr14:24028958-240365235'pad=0,hg19_refFlat_AP1G2:range=chr14:24028958-240365235'pad=0 3'pad=0 strand=- repeatMasking=none,-101.10chr14:24028777-24037279"	NA	inner
CUST_44370_PI429285431	2.9324136	A	2.6051953	A	1.25459202753428	0	lncRNA	48990-1_{1..2218}	"gi|400154080|ref|NR_073094.1| Homo sapiens glucosamine-6-phosphate deaminase 2 (GNPDA2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|400154080|ref|NR_073094.1| Homo sapiens glucosamine-6-phosphate deaminase 2 (GNPDA2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_073094.1	NA	NA	NA	NA	NA	Unknown
CUST_12240_PI429285431	2.9402177	A	2.4889104	A	1.36727865692563	0	lncRNA	13846-1_{1..3000}	lnc-NAP1L2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAP1L2-1:3	chrX	 73070337	 73073336	-	lnc-NAP1L2-1	lnc-NAP1L2-1:3	XLOC_008185	linc-NAP1L2-4	NA	NA	NA	inter
CUST_33730_PI429285431	4.5312576	P	2.7679968	A	3.39464521082826	0	lncRNA	35288-1_{1..2915}	n340509|AK123915|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2971|NULL|-1.0632800|-0.2444438	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340509|AK123915|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2971|NULL|-1.0632800|-0.2444438	chr5	 76369464	 76372378	-	NA	NA	NA	NA	AGGF1	NA	chr5:76359464-76361059	inter
CUST_16285_PI429285431	3.9910307	P	3.8498454	P	1.10281079918218	0	lncRNA	17990-1_{1..314}	lnc-DDX51-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DDX51-4:1	chr12	132378392	132378705	-	lnc-DDX51-4	lnc-DDX51-4:1	XLOC_010272	linc-STX2-4	ULK1	NA	chr12:132379279-132388419	inter
CUST_1341_PI429285431	2.6657677	A	3.0597835	P	0.761008356019459	0	lncRNA	1330-1_{1..717}	"transcript_id ""ENST00000456335.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456335.1"" | genecode_v17"	chr3	 40644616	 40645332	-	ENSG00000226302.1	ENST00000456335.1	RP11-528N21.1	RP11-528N21.1-001	NA	NA	NA	inter
CUST_1232_PI429285431	2.6952434	A	0.9968894	A	3.24530483837894	0	lncRNA	1224-1_{1..825}	"transcript_id ""ENST00000447835.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447835.1"" | genecode_v17"	chr2	216318430	216319254	+	ENSG00000225166.1	ENST00000447835.1	AC012462.2	AC012462.2-001	NA	NA	NA	inter
CUST_4436_PI429285431	0.88846195	A	0.88411105	A	1.00302036621013	0	lncRNA	4386-1_{1..365}	"transcript_id ""ENST00000536933.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536933.1"" | genecode_v17"	chr12	120827349	120827713	+	ENSG00000256695.1	ENST00000536933.1	RP1-166H1.2	RP1-166H1.2-001	COX6A1	NA	chr12:120817349-120843797	inter
CUST_20544_PI429285431	0.8901167	A	0.89965314	A	0.993411642527784	0	lncRNA	22185-1_{1..364}	lnc-SPRYD3-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPRYD3-1:7	chr12	 53439745	 53440108	-	lnc-SPRYD3-1	lnc-SPRYD3-1:7	ENSG00000257337.1	RP11-983P16.4	EIF4B	NA	chr12:53429745-53435993	inter
LNCA_21_P0002155	0.8804778	A	0.8817553	A	0.999114896412301	0	lncRNA	TCONS_00003532	NA	NA	NA	NA	XLOC_001308	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001308), lincRNA [TCONS_00003532]"	chr2:564073-564132	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00003532	TCONS_00003532	chr2	   564073	   564132	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4634_PI429285431	2.6670125	A	2.4642522	A	1.15089825671258	0	lncRNA	4580-1_{1..392}	"transcript_id ""ENST00000414201.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414201.2"" | genecode_v17"	chr13	 61491176	 61491567	+	ENSG00000227510.2	ENST00000414201.2	RP11-196P2.1	RP11-196P2.1-001	NA	NA	NA	inter
CUST_32334_PI429285431	2.0719752	A	1.5717821	A	1.41440286288894	0	lncRNA	34016-1_{1..455}	n338914|AF117338|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1340|NULL|-0.9744550|-0.2507660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338914|AF117338|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1340|NULL|-0.9744550|-0.2507660	chr2	 97260749	 97261203	+	NA	NA	NA	NA	KIAA1310	NA	chr2:97258907-97271170	inter
CUST_50268_PI429285431	4.1142325	P	4.0613503	P	1.0373352318457	0	lncRNA	53991-1_{1..313}	hg19_lincRNAsTranscripts_TCONS_l2_00028813 range=chr9:69080787-69088312 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028813 range=chr9:69080787-69088312 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69080787	 69081099	+	NA	NA	NA	NA	LOC100507370	NA	chr9:69070787-69089939	inter
CUST_17785_PI429285431	0.87653404	A	0.8791492	A	0.998188951150966	0	lncRNA	19517-1_{1..3000}	lnc-C10orf35-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf35-2:2	chr10	 71477011	 71480010	+	lnc-C10orf35-2	lnc-C10orf35-2:2	XLOC_008506	linc-COL13A1	NA	NA	NA	inter
LNCA_21_P0004305	1.8503497	A	0.8833347	A	1.95479185709292	0	lncRNA	TCONS_00010106	NA	NA	NA	NA	XLOC_004574	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004574), lincRNA [TCONS_00010106]"	chr5:139139126-139139185	hs|5q31.2	Agilent_HUMAN_G3V2	TCONS_00010106	TCONS_00010106	chr5	139139126	139139185	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008160	4.0540204	P	3.9416447	P	1.08100687622112	0	lncRNA	TCONS_00021999	NA	NA	NA	NA	XLOC_010599	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010599), lincRNA [TCONS_00021999]"	chr13:48273834-48273775	hs|13q14.2	Agilent_HUMAN_G3V2	TCONS_00021999	TCONS_00021999	chr13	 48273775	 48273834	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24865_PI429285431	2.1296406	A	3.8471162	P	0.304080329769053	0	lncRNA	26406-1_{1..503}	lnc-PANK3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PANK3-2:1	chr5	167659309	167659811	-	lnc-PANK3-2	lnc-PANK3-2:1	ENSG00000253978.1	CTB-178M22.2	ODZ2	NA	chr5:167649309-167669362	inner
CUST_34723_PI429285431	4.6315517	P	4.8732996	P	0.845720057622442	0	lncRNA	36169-1_{1..722}	n341629|D84290|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4100|NULL|2.4903000|-0.3065577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341629|D84290|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4100|NULL|2.4903000|-0.3065577	chr8	143916216	143916937	+	NA	NA	NA	NA	GML	NA	chr8:143916217-143928262	inner
CUST_38771_PI429285431	8.004203	P	7.33438	P	1.59087777543361	0	lncRNA	39763-2_{3001..3546}	n384393|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fwf.1||-0.4361260|-0.2981330	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384393|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fwf.1||-0.4361260|-0.2981330	chr3	195964239	195964784	-	NA	NA	NA	NA	OSTalpha	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-21.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50chr3:195951239-195960301"	NA	inter
CUST_20247_PI429285431	2.2612371	A	1.4129006	A	1.80042374870093	0	lncRNA	21890-1_{1..794}	lnc-CAPN9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CAPN9-1:1	chr1	231014538	231015331	+	lnc-CAPN9-1	lnc-CAPN9-1:1	ENSG00000223393.1	RP5-858B6.3	C1orf198	NA	chr1:231004538-231005335	inter
CUST_49049_PI429285431	0.88797367	A	0.9018804	A	0.990406899508459	0	lncRNA	52877-1_{1..1083}	hg19_lincRNAsTranscripts_TCONS_l2_00020891 range=chr4:174620314-174851001 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020891 range=chr4:174620314-174851001 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	174620314	174621396	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48729_PI429285431	4.7657876	P	5.387764	P	0.649780160422336	0	lncRNA	52569-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00014897 range=chr2:131174351-131199391 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014897 range=chr2:131174351-131199391 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	131174351	131177350	-	NA	NA	NA	NA	LOC646802	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70chr2:131198341-131198697"	NA	inter
CUST_45025_PI429285431	3.1800451	P	2.6608753	A	1.43313031471356	0	lncRNA	49525-1_{1..2550}	"gi|336594538|ref|NR_038910.1| Homo sapiens PCOLCE antisense RNA 1 (PCOLCE-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336594538|ref|NR_038910.1| Homo sapiens PCOLCE antisense RNA 1 (PCOLCE-AS1), non-coding RNA"	Chr7	100187024	100189573	-	100129845	NR_038910.1	NA	NA	NA	"hg19_refFlat_PCOLCE:range=chr7:100200080-1002057265'pad=0,hg19_refFlat_PCOLCE:range=chr7:100200080-1002057265'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.20;hg19_refFlat_FBXO24:range=chr7:100187264-1001985225'pad=0,hg19_refFlat_FBXO24:range=chr7:100187264-1001985225'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.60;hg19_refFlat_FBXO24:range=chr7:100184249-1001985225'pad=0,hg19_refFlat_FBXO24:range=chr7:100184249-1001985225'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.60"	NA	inter
CUST_5401_PI429285431	2.2033744	A	2.4147813	A	0.86369455526098	0	lncRNA	5335-1_{1..535}	"transcript_id ""ENST00000562838.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562838.1"" | genecode_v17"	chr16	  2318664	  2319198	+	ENSG00000260778.1	ENST00000562838.1	hsa-mir-940	hsa-mir-940.1-001	ABCA3	NA	chr16:2325879-2333125	inter
LNCA_21_P0012478	0.8960847	A	0.9218352	A	0.982309461390509	0	lncRNA	THC2685486	NA	NA	NA	NA	XLOC_l2_010493	NA	NA	THC2685486	NA	"BROAD Institute lincRNA (XLOC_l2_010493), lincRNA [TCONS_l2_00019672]"	NA	NA	Agilent_HUMAN_G3V2	THC2685486	THC2685486	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7087_PI429285431	8.317241	P	8.388961	P	0.951502927252551	0	lncRNA	7022-1_{1..502}	"transcript_id ""ENST00000602294.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602294.1"" | genecode_v17"	chrX	 73164159	 73164660	+	ENSG00000225470.2	ENST00000602294.1	JPX	JPX-009	NA	NA	NA	inter
CUST_10454_PI429285431	5.376792	P	6.0806417	P	0.613931798053759	0	lncRNA	11980-1_{1..426}	lnc-RGS9-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGS9-1:10	chr17	 63106834	 63107259	+	lnc-RGS9-1	lnc-RGS9-1:10	XLOC_012281	linc-RGS9-1	NA	NA	NA	inter
CUST_9855_PI429285431	0.9242363	A	1.1020335	A	0.88405179370973	0	lncRNA	11375-1_{1..460}	lnc-ZNF33A-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF33A-4:1	chr10	 37921658	 37922117	+	lnc-ZNF33A-4	lnc-ZNF33A-4:1	XLOC_008456	linc-ZNF33A-3	NA	NA	NA	inter
LNCA_21_P0007421	0.90339667	A	0.9281141	A	0.983013115194637	0	lncRNA	TCONS_00019805	NA	NA	NA	NA	XLOC_009605	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009605), lincRNA [TCONS_00019805]"	chr11:130642769-130642710	hs|11q24.3	Agilent_HUMAN_G3V2	TCONS_00019805	TCONS_00019805	chr11	130642710	130642769	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014616	2.6237888	A	1.68905	A	1.91154451863785	0	lncRNA	XR_110570	XR_110570	XR_110570	NA	Hs.586216	LOC100506120	uncharacterized LOC100506120	NA	THC2608741	NA	"PREDICTED: Homo sapiens hypothetical LOC100506120 (LOC100506120), miscRNA [XR_110570]"	chr5:132561657-132561716	hs|5q31.1	Agilent_HUMAN_G3V2	XR_110570	XR_110570	chr5	132561657	132561716	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31819_PI429285431	2.9313653	A	3.39413	P	0.725594436928511	0	lncRNA	33556-2_{3001..4064}	n338367|AK123430|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|762|NULL|-0.8159440|-0.2506833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338367|AK123430|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|762|NULL|-0.8159440|-0.2506833	chr14	 71192243	 71193306	-	NA	NA	NA	NA	MAP3K9	NA	chr14:71194852-71203302	inter
CUST_20315_PI429285431	4.473059	P	4.5284805	P	0.962313251108869	0	lncRNA	21958-1_{1..738}	lnc-PRKRIR-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRKRIR-1:3	chr11	 76155249	 76155986	-	lnc-PRKRIR-1	lnc-PRKRIR-1:3	ENSG00000255135.2	RP11-111M22.3	C11orf30	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50chr11:76156069-76165700"	NA	inter
LNCA_19_P00319876	0.9047277	A	0.92612416	A	0.985278540134404	0	lncRNA	AL109688	NA	AL109688	NA	Hs.383921	XLOC_011548	NA	NA	THC2737487	NA	"BROAD Institute lincRNA (XLOC_011548), lincRNA [TCONS_00023756]"	chr15:81998896-81998839	hs|15q25.2	Agilent_HUMAN_G3V2	AL109688	AL109688	chr15	 81998839	 81998896	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005427	0.9302252	A	2.387024	A	0.364300580732735	0	lncRNA	TCONS_00013585	NA	NA	NA	NA	XLOC_006240	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006240), lincRNA [TCONS_00013585]"	chr7:128170231-128170290	hs|7q32.1	Agilent_HUMAN_G3V2	TCONS_00013585	TCONS_00013585	chr7	128170231	128170290	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00328996	8.725705	P	8.55062	P	1.12903092253764	0	lncRNA	AK057050	NA	AK057050	NA	NA	XLOC_l2_015037	NA	NA	THC2500019	NA	"BROAD Institute lincRNA (XLOC_l2_015037), lincRNA [TCONS_l2_00029078]"	chr9:132267364-132267423	hs|9q34.11	Agilent_HUMAN_G3V2	AK057050	AK057050	chr9	132267364	132267423	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25496_PI429285431	0.8866113	A	0.89542264	A	0.993911057725999	0	lncRNA	27026-1_{1..343}	lnc-PLA2G7-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLA2G7-2:2	chr6	 46655337	 46655679	-	lnc-PLA2G7-2	lnc-PLA2G7-2:2	ENSG00000242973.2	RP11-446F17.3	TDRD6	NA	chr6:46655612-46665537	inter
CUST_774_PI429285431	3.811316	P	4.097303	P	0.820180301737057	0	lncRNA	766-1_{1..642}	"transcript_id ""ENST00000412381.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412381.1"" | genecode_v17"	chr2	 16225344	 16225985	-	ENSG00000236989.1	ENST00000412381.1	AC142119.1	AC142119.1-001	NA	NA	NA	inter
CUST_4218_PI429285431	0.88986164	A	0.8993587	A	0.993438759197141	0	lncRNA	4177-1_{1..616}	"transcript_id ""ENST00000222396.5"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000222396.5"" | genecode_v17"	chr12	 31149973	 31150588	-	ENSG00000226472.3	ENST00000222396.5	RP11-551L14.4	RP11-551L14.4-001	TSPAN11	NA	chr12:31139973-31149537	inter
CUST_20254_PI429285431	10.324405	P	10.354247	P	0.97952756688276	0	lncRNA	21897-1_{1..817}	lnc-GINS1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GINS1-1:4	chr20	 25654488	 25655304	+	lnc-GINS1-1	lnc-GINS1-1:4	ENSG00000213742.2	RP4-694B14.5	ZNF337	NA	chr20:25650496-25664544	inter
CUST_12031_PI429285431	0.9126223	A	0.91135275	A	1.00088037230348	0	lncRNA	13614-1_{1..569}	lnc-RP11-67H2.1.1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-67H2.1.1-2:5	chr8	112768739	112769307	+	lnc-RP11-67H2.1.1-2	lnc-RP11-67H2.1.1-2:5	XLOC_006903	linc-UTP23-3	NA	NA	NA	inter
CUST_36283_PI429285431	0.8872118	A	2.0689952	A	0.440806254732286	0	lncRNA	37517-1_{1..1678}	n344811|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_360|NULL|-1.5920400|-0.2498520	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344811|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_360|NULL|-1.5920400|-0.2498520	chr1	200292939	200294616	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37817_PI429285431	1.4731113	A	0.9047113	A	1.48287809391981	0	lncRNA	38908-1_{1..545}	n346334|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1884|NULL|-1.5738200|-0.1128488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346334|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1884|NULL|-1.5738200|-0.1128488	chr7	 32768372	 32768916	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45869_PI429285431	1.9445293	A	1.4252223	A	1.43326661159088	0	lncRNA	50196-2_{3001..6000}	"gi|253735742|ref|NR_028025.1| Homo sapiens CREB/ATF bZIP transcription factor (CREBZF), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|253735742|ref|NR_028025.1| Homo sapiens CREB/ATF bZIP transcription factor (CREBZF), transcript variant 3, non-coding RNA"	Chr11	 85371608	 85374607	-	58487	NR_028025.1	NA	NA	NA	NA	NA	inter
CUST_22172_PI429285431	0.8991461	A	0.9133651	A	0.990192550054773	0	lncRNA	23774-1_{1..975}	lnc-AP4S1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP4S1-1:1	chr14	 31771467	 31772441	+	lnc-AP4S1-1	lnc-AP4S1-1:1	ENSG00000257831.1	RP11-596D21.1	HEATR5A	"hg19_refFlat_HEATR5A:range=chr14:31762511-318721815'pad=0,hg19_refFlat_HEATR5A:range=chr14:31762511-318721815'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50chr14:31761467-31781945"	NA	inner
CUST_4088_PI429285431	0.8815401	A	0.88848007	A	0.995201130904673	0	lncRNA	4049-1_{1..504}	"transcript_id ""ENST00000535683.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535683.1"" | genecode_v17"	chr11	115628638	115629141	-	ENSG00000246100.3	ENST00000535683.1	CTC-774J1.2	CTC-774J1.2-004	NA	NA	NA	inter
LNCA_21_P0007671	0.8888109	A	0.9018039	A	0.991034371781178	0	lncRNA	TCONS_00020657	NA	NA	NA	NA	XLOC_009957	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009957), lincRNA [TCONS_00020657]"	chr12:131701643-131701702	hs|12q24.33	Agilent_HUMAN_G3V2	TCONS_00020657	TCONS_00020657	chr12	131701643	131701702	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29997_PI429285431	6.142531	P	6.343236	P	0.870125256355415	0	lncRNA	31763-1_{1..266}	n334378|S78086|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216776|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216776|2.7886300|-0.0378025	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334378|S78086|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216776|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216776|2.7886300|-0.0378025	chr19	  5208249	  5208514	-	NA	NA	NA	NA	PTPRS	NA	chr19:5205519-5220593	inner
CUST_4646_PI429285431	1.1784526	A	1.4270099	A	0.841737735150744	0	lncRNA	4592-1_{1..2371}	"transcript_id ""ENST00000594461.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000594461.1"" | genecode_v17"	chr13	 75126693	 75129063	+	ENSG00000236678.2	ENST00000594461.1	LINC00347	LINC00347-002	NA	NA	NA	inter
CUST_13847_PI429285431	0.902696	A	0.9122119	A	0.993425786071508	0	lncRNA	15490-1_{1..602}	lnc-C1orf204-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf204-1:2	chr1	159749016	159749617	-	lnc-C1orf204-1	lnc-C1orf204-1:2	XLOC_001061	linc-CRP	DUSP23	NA	chr1:159750759-159752333	inter
CUST_48504_PI429285431	0.92764425	A	0.88533664	A	1.0297596243497	0	lncRNA	52357-1_{1..584}	hg19_lincRNAsTranscripts_TCONS_l2_00013476 range=chr2:11531861-11542386 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013476 range=chr2:11531861-11542386 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 11531861	 11532444	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008232	1.9001136	A	0.88198966	A	2.02528359663066	0	lncRNA	TCONS_00022143	NA	NA	NA	NA	XLOC_010312	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010312), lincRNA [TCONS_00022143]"	chr13:24090494-24090553	hs|13q12.12	Agilent_HUMAN_G3V2	TCONS_00022143	TCONS_00022143	chr13	 24090494	 24090553	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30059_PI429285431	2.9167383	A	4.1233487	P	0.433285421191668	0	lncRNA	31828-1_{1..219}	n334571|U65474|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220880|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220880|0.6260560|-0.0509629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334571|U65474|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220880|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220880|0.6260560|-0.0509629	chr12	 49169830	 49170048	-	NA	NA	NA	NA	ADCY6	NA	chr12:49159975-49180245	inner
CUST_41956_PI429285431	1.0917513	A	0.89067125	A	1.1495586311717	0	lncRNA	43731-1_{1..84}	ENST00000385075 ncrna:miRNA chromosome:GRCh37:19:54183194:54183277:1 gene:ENSG00000207810 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385075 ncrna:miRNA chromosome:GRCh37:19:54183194:54183277:1 gene:ENSG00000207810 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54183194	 54183277	+	ENSG00000207810	ENST00000385075	NA	NA	NA	NA	NA	inter
CUST_51866_PI429285431	4.992754	P	5.3705473	P	0.769613867471303	0	lncRNA	55418-1_{1..930}	hg19_lincRNAsTranscripts_TCONS_l2_00012651 range=chr19:52204639-52207744 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012651 range=chr19:52204639-52207744 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 52204639	 52205568	+	NA	NA	NA	NA	HAS1	NA	chr19:52216365-52217744	inter
CUST_9745_PI429285431	0.8859246	A	0.8977771	A	0.99181812825584	0	lncRNA	11262-1_{1..245}	lnc-COPS4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COPS4-1:1	chr4	 84010210	 84010454	+	lnc-COPS4-1	lnc-COPS4-1:1	XLOC_003595	linc-MRPS18C	PLAC8	NA	chr4:84011201-84020241	inter
CUST_8322_PI429285431	0.8810291	A	1.1954614	A	0.804167368073304	0	lncRNA	9906-2_{3001..3727}	lnc-IL1R2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL1R2-2:1	chr2	102603154	102603880	+	lnc-IL1R2-2	lnc-IL1R2-2:1	ENSG00000250054	AC005035.2	IL1R2	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90chr2:102608306-102613629"	NA	inter
CUST_50920_PI429285431	0.8893478	A	0.890143	A	0.999448961239673	0	lncRNA	54561-1_{1..429}	hg19_lincRNAsTranscripts_TCONS_l2_00005503 range=chr12:9800760-9806494 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005503 range=chr12:9800760-9806494 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	  9800760	  9801188	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22343_PI429285431	4.5966444	P	4.0690217	P	1.44155182113833	0	lncRNA	23937-1_{1..793}	lnc-CDK2AP1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CDK2AP1-1:4	chr12	123744821	123745613	-	lnc-CDK2AP1-1	lnc-CDK2AP1-1:4	ENSG00000235423.3	RP11-282O18.3	C12orf65	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60chr12:123734821-123742506"	NA	inter
CUST_29053_PI429285431	0.90695363	A	0.9036387	A	1.00230037619791	0	lncRNA	30782-1_{1..1991}	n326543|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027496|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027496|-1.0325500|-0.3711073	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326543|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027496|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027496|-1.0325500|-0.3711073	chr1	 84039786	 84041776	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51655_PI429285431	1.7572982	A	1.1545017	A	1.51865745979245	0	lncRNA	55224-1_{1..2936}	hg19_lincRNAsTranscripts_TCONS_l2_00010918 range=chr17:62931756-62954650 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010918 range=chr17:62931756-62954650 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 62931756	 62934691	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006046	0.87884456	A	0.8798344	A	0.999314130510876	0	lncRNA	ENST00000421509	NA	NA	NA	NA	XLOC_007538	NA	ENST00000421509	THC2716127	NA	"BROAD Institute lincRNA (XLOC_007538), lincRNA [TCONS_00015742]"	chr9:120630259-120630318	hs|9q33.1	Agilent_HUMAN_G3V2	ENST00000421509	ENST00000421509	chr9	120630259	120630318	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20069_PI429285431	0.88708925	A	0.89752465	A	0.992792829035196	0	lncRNA	21719-2_{3001..4374}	lnc-R3HCC1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-R3HCC1-1:2	chr8	 23223639	 23225012	+	lnc-R3HCC1-1	lnc-R3HCC1-1:2	ENSG00000253837.1	RP11-177H13.2	LOXL2	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_LOXL2:range=chr8:23155556-232258645'pad=0,hg19_refFlat_LOXL2:range=chr8:23155556-232258645'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-60.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60chr8:23210639-23233638"	NA	inter
CUST_49635_PI429285431	0.8899407	A	1.3909516	A	0.706611483256442	0	lncRNA	53419-1_{1..661}	hg19_lincRNAsTranscripts_TCONS_l2_00027299 range=chr7:25695784-25829649 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027299 range=chr7:25695784-25829649 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 25695784	 25696444	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43272_PI429285431	2.0670533	A	0.8805778	A	2.2759604693286	0	lncRNA	48090-1_{1..888}	ENST00000603976 havana:sense_intronic chromosome:GRCh37:9:127704887:127705774:-1 gene:ENSG00000271341 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000603976 havana:sense_intronic chromosome:GRCh37:9:127704887:127705774:-1 gene:ENSG00000271341 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr9	127704887	127705774	-	ENSG00000271341	ENST00000603976	NA	NA	GOLGA1	NA	chr9:127694887-127703386	inner
CUST_27612_PI429285431	0.88759446	A	0.88907343	A	0.998975381394849	0	lncRNA	29189-1_{1..1361}	n324814|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000139728|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000139728|-1.2742400|-0.2965683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324814|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000139728|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000139728|-1.2742400|-0.2965683	chr21	 33405874	 33407234	-	NA	NA	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50"	NA	inter
CUST_33766_PI429285431	0.8901633	A	0.8858875	A	1.00296815498959	0	lncRNA	35319-2_{3001..3384}	n340545|AK128567|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3007|NULL|-0.3996160|-0.3660352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340545|AK128567|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3007|NULL|-0.3996160|-0.3660352	chr5	 88393860	 88394243	+	NA	NA	NA	NA	NA	"hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_25209_PI429285431	7.1674247	P	8.052533	P	0.54144687599008	0	lncRNA	26740-1_{1..2608}	lnc-SMTN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMTN-1:1	chr22	 31498259	 31500866	+	lnc-SMTN-1	lnc-SMTN-1:1	ENSG00000248603.1	RP3-412A9.10	SMTN	NA	chr22:31488259-31500610	inner
CUST_8082_PI429285431	1.540391	A	1.0571942	A	1.39783763978681	0	lncRNA	9688-1_{1..1833}	lnc-STAT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STAT1-1:1	chr2	191799863	191801695	-	lnc-STAT1-1	lnc-STAT1-1:1	ENSG00000245033	ENST00000501836	GLS	NA	chr2:191789863-191810014	inner
LNCA_21_P0009827	0.88101184	A	0.9815335	A	0.932695679776356	0	lncRNA	ENST00000458004	NA	NA	NA	NA	XLOC_013459	NA	ENST00000458004	THC2728295	NA	"BROAD Institute lincRNA (XLOC_013459), lincRNA [TCONS_00027901]"	chr20:10166361-10166420	hs|20p12.2	Agilent_HUMAN_G3V2	ENST00000458004	ENST00000458004	chr20	 10166361	 10166420	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_870_PI429285431	1.034334	A	1.1614528	A	0.915658282621886	0	lncRNA	864-1_{1..591}	"transcript_id ""ENST00000426892.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426892.1"" | genecode_v17"	chr2	 47454056	 47454646	+	ENSG00000226087.1	ENST00000426892.1	AC106869.2	AC106869.2-001	NA	NA	NA	inter
CUST_45399_PI429285431	9.840108	P	8.897711	P	1.921718472549	0	lncRNA	49828-2_{3001..3221}	"gi|389565512|ref|NR_051978.1| Homo sapiens TBC1 domain family, member 2 (TBC1D2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|389565512|ref|NR_051978.1| Homo sapiens TBC1 domain family, member 2 (TBC1D2), transcript variant 4, non-coding RNA"	Chr9	100964280	100964500	-	55357	NR_051978.1	NA	NA	NA	NA	NA	inter
CUST_3008_PI429285431	2.7309089	A	2.2364929	A	1.40875038043563	0	lncRNA	2987-1_{1..489}	"transcript_id ""ENST00000520494.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520494.1"" | genecode_v17"	chr8	 10335001	 10335489	-	ENSG00000253678.1	ENST00000520494.1	RP11-981G7.3	RP11-981G7.3-001	PRSS55	NA	chr8:10332392-10346885	inter
CUST_715_PI429285431	0.87677646	A	0.8810328	A	0.99705407769949	0	lncRNA	708-1_{1..616}	"transcript_id ""ENST00000588220.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588220.1"" | genecode_v17"	chr2	  6778924	  6779539	-	ENSG00000236172.2	ENST00000588220.1	AC097517.2	AC097517.2-010	NA	NA	NA	inter
CUST_33420_PI429285431	0.8773031	A	0.8830056	A	0.996055129727684	0	lncRNA	34999-1_{1..2954}	n340148|AK054890|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2608|NULL|0.2059120|-0.2921389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340148|AK054890|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2608|NULL|0.2059120|-0.2921389	chr10	116184203	116187156	-	NA	NA	NA	NA	ABLIM1	NA	chr10:116190869-116197157	inter
CUST_26398_PI429285431	0.88411105	A	1.4875748	A	0.658171859649079	0	lncRNA	27905-1_{1..754}	lnc-TAS2R1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TAS2R1-2:2	chr5	  9712284	  9713037	-	lnc-TAS2R1-2	lnc-TAS2R1-2:2	ENSG00000249781.1	CTD-2143L24.1	NA	NA	NA	inter
CUST_39078_PI429285431	9.100477	P	8.399182	P	1.6259636444532	0	lncRNA	40053-1_{1..1510}	n385566|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aez.1||0.9674700|-0.2747868	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385566|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aez.1||0.9674700|-0.2747868	chr9	 68726484	 68727993	+	NA	NA	NA	NA	LOC100652863	NA	chr9:68726465-68750959	inter
CUST_43254_PI429285431	10.316798	P	10.208803	P	1.07772940991169	0	lncRNA	48072-1_{1..159}	ENST00000415147 havana:sense_intronic chromosome:GRCh37:21:37447179:37447900:-1 gene:ENSG00000230212 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000415147 havana:sense_intronic chromosome:GRCh37:21:37447179:37447900:-1 gene:ENSG00000230212 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr21	 37447179	 37447337	-	ENSG00000230212	ENST00000415147	NA	NA	CBR1	NA	chr21:37442285-37445462	inter
CUST_34034_PI429285431	1.1663244	A	0.90245754	A	1.20069261571491	0	lncRNA	35567-1_{1..3000}	n340852|AL831898|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3316|NULL|1.6994200|-0.2450249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340852|AL831898|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3316|NULL|1.6994200|-0.2450249	chr6	 13358066	 13361065	-	NA	NA	NA	NA	GFOD1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90chr6:13363587-13371194"	NA	inter
CUST_34_PI429285431	3.2637675	P	3.4984727	P	0.849858641332346	0	lncRNA	33-1_{1..387}	"transcript_id ""ENST00000381010.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000381010.3"" | genecode_v17"	chr9	 13927970	 13928356	+	ENSG00000205636.3	ENST00000381010.3	LINC00583	LINC00583-001	NA	NA	NA	inter
CUST_320_PI429285431	0.89536804	A	0.90264595	A	0.994968040144836	0	lncRNA	311-1_{1..709}	"transcript_id ""ENST00000421997.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000421997.1"" | genecode_v17"	chr1	 95138685	 95139393	-	ENSG00000224081.3	ENST00000421997.1	RP11-86H7.1	RP11-86H7.1-003	SLC44A3	NA	chr1:95285901-95295775	inter
LNCA_21_P0010429	4.043116	P	4.0174165	P	1.01797314331383	0	lncRNA	THC2655974	NA	NA	NA	NA	XLOC_014288	NA	NA	THC2655974	NA	"BROAD Institute lincRNA (XLOC_014288), lincRNA [TCONS_00029632]"	chr22:051035649-051035708	hs|22q13.33	Agilent_HUMAN_G3V2	THC2655974	THC2655974	chr22	 51035649	 51035708	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003188	0.9049395	A	0.92866707	A	0.983687810277985	0	lncRNA	TCONS_00006705	NA	NA	NA	NA	XLOC_003319	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003319), lincRNA [TCONS_00006705]"	chr3:166647275-166647216	hs|3q26.1	Agilent_HUMAN_G3V2	TCONS_00006705	TCONS_00006705	chr3	166647216	166647275	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011539	1.3529963	A	1.4883606	A	0.910439906179784	0	lncRNA	TCONS_l2_00010700	NA	NA	NA	NA	XLOC_l2_005737	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005737), lincRNA [TCONS_l2_00010700]"	chr17:30424070-30424129	hs|17q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00010700	TCONS_l2_00010700	chr17	 30424070	 30424129	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_520_PI429285431	2.8333952	A	2.2403862	A	1.50838948648051	0	lncRNA	512-1_{1..451}	"transcript_id ""ENST00000419614.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419614.1"" | genecode_v17"	chr1	189744595	189745045	+	ENSG00000232212.1	ENST00000419614.1	RP11-398M15.1	RP11-398M15.1-001	NA	NA	NA	inter
CUST_24317_PI429285431	0.90682614	A	0.9065285	A	1.00020632960985	0	lncRNA	25869-1_{1..527}	lnc-ZFC3H1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZFC3H1-1:1	chr12	 71977509	 71978035	-	lnc-ZFC3H1-1	lnc-ZFC3H1-1:1	ENSG00000257761.1	RP11-186F10.2	LGR5	"hg19_refFlat_LGR5:range=chr12:71833861-719785145'pad=0,hg19_refFlat_LGR5:range=chr12:71833861-719785145'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80chr12:71967509-71978622"	NA	inner
CUST_8968_PI429285431	7.1230493	P	6.3241096	P	1.73982198494955	0	lncRNA	10501-1_{1..1060}	lnc-SERPINC1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SERPINC1-1:10	chr1	173837098	173838157	-	lnc-SERPINC1-1	lnc-SERPINC1-1:10	ENSG00000234741	GAS5	DARS2	NA	chr1:173827098-173827682	inter
CUST_7538_PI429285431	0.9125668	A	0.91443294	A	0.998707326543522	0	lncRNA	9175-1_{1..2300}	lnc-ZNF814-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZNF814-1:1	chr19	 58379219	 58381518	-	lnc-ZNF814-1	lnc-ZNF814-1:1	ENSG00000225702	ENST00000416025	ZNF587	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_UBE2C:range=chr20:44442092-444454065'pad=0,hg19_refFlat_UBE2C:range=chr20:44442092-444454065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_UBE2C:range=chr20:44441335-444454065'pad=0,hg19_refFlat_UBE2C:range=chr20:44441335-444454065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40chr19:58369219-58376491"	NA	inter
CUST_26123_PI429285431	1.1483123	A	0.9278151	A	1.16513506101686	0	lncRNA	27634-1_{1..306}	lnc-OST4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OST4-3:1	chr2	 27232644	 27232949	-	lnc-OST4-3	lnc-OST4-3:1	ENSG00000230286.1	AC013472.4	MAPRE3	NA	chr2:27222644-27242675	inner
CUST_40076_PI429285431	5.0406327	P	5.369071	P	0.796398108679028	0	lncRNA	40923-1_{1..2281}	n407346|NR_026809|lncRNA|Homosapiens||RefGeneNoncode|NR_026809||5.8064800|-0.2154523	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407346|NR_026809|lncRNA|Homosapiens||RefGeneNoncode|NR_026809||5.8064800|-0.2154523	chr17	 18427879	 18430159	-	NA	NA	NA	NA	NA	"hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-18.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00"	NA	inter
LNCA_21_P0002564	4.852477	P	4.790171	P	1.04413336779541	0	lncRNA	TCONS_00004669	NA	NA	NA	NA	XLOC_001314	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001314), lincRNA [TCONS_00004669]"	chr2:1567330-1567389	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00004669	TCONS_00004669	chr2	  1567330	  1567389	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_906_PI429285431	0.90050054	A	0.9142834	A	0.990491939635478	0	lncRNA	895-1_{1..1320}	"transcript_id ""ENST00000601940.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601940.1"" | genecode_v17"	chr2	 65677208	 65678527	-	ENSG00000234255.4	ENST00000601940.1	AC012370.3	AC012370.3-005	NA	NA	NA	inter
LNCA_21_P0012703	8.26024	P	8.1361	P	1.0898578675491	0	lncRNA	TCONS_l2_00021481	NA	NA	NA	NA	XLOC_l2_011415	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011415), lincRNA [TCONS_l2_00021481]"	chr4:188891983-188891587	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_l2_00021481	TCONS_l2_00021481	chr4	188891587	188891983	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42399_PI429285431	0.90157735	A	1.3653839	A	0.725070634151145	0	lncRNA	45095-1_{1..77}	ENST00000517180 ncrna:snoRNA chromosome:GRCh37:3:100364965:100365041:1 gene:ENSG00000252989 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517180 ncrna:snoRNA chromosome:GRCh37:3:100364965:100365041:1 gene:ENSG00000252989 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	100364965	100365041	+	ENSG00000252989	ENST00000517180	NA	NA	GPR128	NA	chr3:100354965-100375041	inner
CUST_45957_PI429285431	0.92484516	A	0.90557814	A	1.01344445531768	0	lncRNA	50250-1_{1..737}	"gi|388240824|ref|NR_046578.1| Homo sapiens CACNA1C antisense RNA 4 (CACNA1C-AS4), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|388240824|ref|NR_046578.1| Homo sapiens CACNA1C antisense RNA 4 (CACNA1C-AS4), non-coding RNA"	Chr12	  2329703	  2330439	-	100874234	NR_046578.1	NA	NA	NA	NA	NA	inter
CUST_28038_PI429285431	0.91024226	A	0.92511976	A	0.989740692253757	0	lncRNA	29654-1_{1..813}	n325301|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325322|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325322|-1.0727800|-0.4253921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325301|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325322|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325322|-1.0727800|-0.4253921	chr2	 58356515	 58357327	+	NA	NA	NA	NA	VRK2	NA	chr2:58346515-58387055	inner
CUST_48655_PI429285431	0.88989025	A	0.89399827	A	0.997156587695452	0	lncRNA	52501-1_{1..1272}	hg19_lincRNAsTranscripts_TCONS_l2_00014693 range=chr2:95420754-95426095 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014693 range=chr2:95420754-95426095 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 95420754	 95422025	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7223_PI429285431	8.457415	P	8.59128	P	0.911386559525357	0	lncRNA	7720-1_{1..89}	"transcript_id ""ENST00000365241.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000365241.1"" | genecode_v17"	chr5	140098510	140098598	+	ENSG00000202111.1	ENST00000365241.1	VTRNA1-2	VTRNA1-2-201	NA	NA	NA	inter
CUST_36665_PI429285431	1.4449527	A	0.90126985	A	1.45768889746799	0	lncRNA	37855-1_{1..3000}	n345160|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_709|NULL|-1.3084800|-0.3191685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345160|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_709|NULL|-1.3084800|-0.3191685	chr12	 32557112	 32560111	+	NA	NA	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-57.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-25.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0,hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-20.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.81;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10"	NA	inter
CUST_8577_PI429285431	0.8838142	A	2.3749652	A	0.355728630943176	0	lncRNA	10134-1_{1..777}	lnc-PERP-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PERP-2:2	chr6	138182119	138182895	-	lnc-PERP-2	lnc-PERP-2:2	ENSG00000237499	RP11-356I2.4	TNFAIP3	NA	chr6:138188581-138192628	inter
LNCA_21_P0001664	4.504258	P	4.106928	P	1.3170681518916	0	lncRNA	ENST00000414210	NA	BC039095	NA	Hs.250839	XLOC_000041	NA	ENST00000414210	NA	NA	"BROAD Institute lincRNA (XLOC_000041), lincRNA [TCONS_00001934]"	chr1:6784760-6784819	hs|1p36.31	Agilent_HUMAN_G3V2	ENST00000414210	ENST00000414210	chr1	  6784760	  6784819	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_118_PI429285431	1.4117539	A	0.9538721	A	1.37352369602765	0	lncRNA	110-1_{1..394}	"transcript_id ""ENST00000585768.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585768.1"" | genecode_v17"	chr1	   719750	   720143	+	ENSG00000237491.3	ENST00000585768.1	RP11-206L10.9	RP11-206L10.9-009	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80"	NA	inter
CUST_4821_PI429285431	1.0438566	A	1.6162755	A	0.672488312637923	0	lncRNA	4764-1_{1..708}	"transcript_id ""ENST00000557295.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557295.1"" | genecode_v17"	chr14	 51800260	 51800967	+	ENSG00000258479.1	ENST00000557295.1	LINC00640	LINC00640-003	NA	NA	NA	inter
CUST_29967_PI429285431	8.214901	P	8.454573	P	0.846937843721219	0	lncRNA	31733-1_{1..234}	n334197|S53686|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000215730|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000215730|-1.2463100|-0.1029407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334197|S53686|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000215730|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000215730|-1.2463100|-0.1029407	chr1	 47689744	 47689977	-	NA	NA	NA	NA	TAL1	NA	chr1:47681963-47695443	inner
CUST_27598_PI429285431	0.91232204	A	1.8069936	A	0.537869631217911	0	lncRNA	29177-1_{1..698}	n324801|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194246|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194246|-0.1051070|-0.1658791	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324801|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194246|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194246|-0.1051070|-0.1658791	chr21	 35430804	 35431501	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010234	2.9548125	P	3.243692	P	0.8185375464583	0	lncRNA	TCONS_00028996	NA	NA	NA	NA	XLOC_013914	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013914), lincRNA [TCONS_00028996]"	chr21:33917264-33918261	hs|21q22.11	Agilent_HUMAN_G3V2	TCONS_00028996	TCONS_00028996	chr21	 33917264	 33918261	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50814_PI429285431	4.0617104	P	3.8231535	P	1.1798119278988	0	lncRNA	54465-1_{1..813}	hg19_lincRNAsTranscripts_TCONS_l2_00005007 range=chr11:50239002-50257604 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005007 range=chr11:50239002-50257604 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	 50239002	 50239814	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28735_PI429285431	0.892544	A	0.8943628	A	0.998740098251472	0	lncRNA	30435-1_{1..777}	n326128|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046438|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046438|-1.1695600|-0.2576665	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326128|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046438|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046438|-1.1695600|-0.2576665	chr10	  2044458	  2045234	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9393_PI429285431	0.8778638	A	0.88384366	A	0.99586365523833	0	lncRNA	10897-1_{1..1656}	lnc-OXCT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OXCT1-1:1	chr5	 42175255	 42176910	-	lnc-OXCT1-1	lnc-OXCT1-1:1	XLOC_004800	linc-OXCT1-1	NA	NA	NA	inter
CUST_3901_PI429285431	0.9282186	A	0.8850192	A	1.03039635851506	0	lncRNA	3870-1_{1..801}	"transcript_id ""ENST00000528119.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000528119.1"" | genecode_v17"	chr11	 29640349	 29641149	+	ENSG00000255117.1	ENST00000528119.1	RP5-1027O15.1	RP5-1027O15.1-002	NA	NA	NA	inter
CUST_16099_PI429285431	3.8590927	P	3.3944988	P	1.37992886658869	0	lncRNA	17804-1_{1..395}	lnc-LACE1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LACE1-2:1	chr6	108583585	108583979	+	lnc-LACE1-2	lnc-LACE1-2:1	XLOC_005419	linc-LACE1-2	SNX3	NA	chr6:108573585-108582464	inter
CUST_24512_PI429285431	1.0210438	A	1.7422522	A	0.606589150856757	0	lncRNA	26063-1_{1..472}	lnc-SEC13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SEC13-1:1	chr3	 10611805	 10612276	-	lnc-SEC13-1	lnc-SEC13-1:1	ENSG00000236999.1	ATP2B2-IT1	NA	NA	NA	inter
CUST_10162_PI429285431	0.90727097	A	0.9054079	A	1.0012922159101	0	lncRNA	11687-1_{1..211}	lnc-ZNF85-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF85-3:1	chr19	 20857719	 20857929	+	lnc-ZNF85-3	lnc-ZNF85-3:1	XLOC_013004	linc-ZNF85-1	NA	NA	NA	inter
CUST_48349_PI429285431	0.8773662	A	1.2794843	A	0.756746446168974	0	lncRNA	52206-1_{1..216}	hg19_lincRNAsTranscripts_TCONS_l2_00001278 range=chr1:65459195-65510206 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001278 range=chr1:65459195-65510206 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 65459195	 65459410	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39495_PI429285431	5.219469	P	5.6130333	P	0.761246555385025	0	lncRNA	40442-1_{1..2036}	n387223|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011agp.1||7.1974000|-0.1320284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387223|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011agp.1||7.1974000|-0.1320284	chr22	 18761201	 18763236	-	NA	NA	NA	NA	LOC100132900	NA	chr22:18781949-18789474	inter
CUST_7415_PI429285431	0.89154804	A	0.90618217	A	0.989907666911038	0	lncRNA	9058-1_{1..1374}	lnc-C15orf44-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C15orf44-1:1	chr15	 65947230	 65948603	-	lnc-C15orf44-1	lnc-C15orf44-1:1	ENSG00000248997	ENST00000505666	DENND4A	NA	chr15:65952954-65958184	inner
CUST_43167_PI429285431	1.7169062	A	1.8590022	A	0.906201635674582	0	lncRNA	47981-2_{3001..4204}	ENST00000571452 havana:sense_intronic chromosome:GRCh37:HG748_PATCH:77594114:77600003:-1 gene:ENSG00000263278 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,ncbi,"	>ENST00000571452 havana:sense_intronic chromosome:GRCh37:HG748_PATCH:77594114:77600003:-1 gene:ENSG00000263278 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chrHG748_PATCH	 77597114	 77598317	-	ENSG00000263278	ENST00000571452	NA	NA	NA	NA	NA	Unknown
CUST_14082_PI429285431	3.725449	P	3.7850995	P	0.959496533947216	0	lncRNA	15727-1_{1..823}	lnc-CENPJ-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CENPJ-2:1	chr13	 25310362	 25311184	-	lnc-CENPJ-2	lnc-CENPJ-2:1	XLOC_010535	linc-PARP4	NA	NA	NA	inter
CUST_36485_PI429285431	1.0507665	A	1.841001	A	0.578250093800479	0	lncRNA	37687-1_{1..467}	n344987|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_536|NULL|-1.6796000|-0.3845384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344987|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_536|NULL|-1.6796000|-0.3845384	chr8	  2261983	  2262449	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50846_PI429285431	8.587127	P	8.568724	P	1.01283769221142	0	lncRNA	54491-1_{1..541}	hg19_lincRNAsTranscripts_TCONS_l2_00004632 range=chr11:71991188-71992041 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004632 range=chr11:71991188-71992041 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 71991188	 71991728	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18964_PI429285431	2.9450479	A	2.4933305	A	1.36766737433578	0	lncRNA	20656-1_{1..1430}	lnc-AL592284.1-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL592284.1-1:12	chr1	144621447	144622876	+	lnc-AL592284.1-1	lnc-AL592284.1-1:12	ENSG00000225241	NBPF8	NBPF9	NA	chr1:144614959-144621685	inner
CUST_13922_PI429285431	0.87913316	A	1.021777	A	0.90585758565578	0	lncRNA	15569-1_{1..1583}	lnc-LYZL1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYZL1-4:1	chr10	 29423243	 29424825	+	lnc-LYZL1-4	lnc-LYZL1-4:1	XLOC_008428	linc-LYZL1-2	NA	NA	NA	inter
CUST_32159_PI429285431	3.6491992	P	1.7195988	A	3.80949668549422	0	lncRNA	33860-1_{1..1398}	n338728|AK130631|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1148|NULL|-0.9403620|-0.2066952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338728|AK130631|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1148|NULL|-0.9403620|-0.2066952	chr2	 28613583	 28614980	+	NA	NA	NA	NA	FOSL2	NA	chr2:28615779-28624776	inter
CUST_52004_PI429285431	4.2592077	P	4.2370496	P	1.01547737745405	0	lncRNA	55537-1_{1..770}	hg19_lincRNAsTranscripts_TCONS_l2_00016971 range=chr21:15095903-15097830 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016971 range=chr21:15095903-15097830 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr21	 15095903	 15096672	+	NA	NA	NA	NA	NA	"hg19_refFlat_C22orf39:range=chr22:19429167-194353225'pad=0,hg19_refFlat_C22orf39:range=chr22:19429167-194353225'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40"	NA	inter
CUST_19220_PI429285431	0.8803008	A	0.8794546	A	1.00058671319308	0	lncRNA	20890-1_{1..410}	lnc-NDUFA5-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFA5-1:5	chr7	123264597	123265006	-	lnc-NDUFA5-1	lnc-NDUFA5-1:5	ENSG00000230442.1	RP11-390E23.3	ASB15	NA	chr7:123254597-123274636	inner
CUST_30208_PI429285431	4.43793	P	3.4743526	P	1.95013959669346	0	lncRNA	31983-1_{1..338}	n335026|AJ564444|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248799|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248799|0.7828000|-0.4355521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335026|AJ564444|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248799|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248799|0.7828000|-0.4355521	chr17	 35687198	 35687535	-	NA	NA	NA	NA	ACACA	NA	chr17:35677198-35732509	inner
CUST_20377_PI429285431	8.257918	P	8.552502	P	0.815307391767679	0	lncRNA	22019-1_{1..244}	lnc-IDH3G-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IDH3G-1:1	chrX	153031838	153032081	-	lnc-IDH3G-1	lnc-IDH3G-1:1	ENSG00000232725.1	U52111.14	PLXNB3	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90chrX:153029651-153041933"	NA	inner
CUST_39391_PI429285431	2.8046741	A	1.1159846	A	3.22363745296289	0	lncRNA	40354-1_{1..1148}	n386555|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010nxs.1||8.1780900|-0.0858184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386555|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010nxs.1||8.1780900|-0.0858184	chr1	    16857	    18004	-	NA	NA	NA	NA	LOC100652771	NA	chr1:12190-13639	inter
CUST_43437_PI429285431	6.369126	P	6.5321574	P	0.893146412968989	0	lncRNA	48245-1_{1..1987}	"gi|395132438|ref|NR_073021.1| Homo sapiens ST3 beta-galactoside alpha-2,3-sialyltransferase 3 (ST3GAL3), transcript variant 24, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|395132438|ref|NR_073021.1| Homo sapiens ST3 beta-galactoside alpha-2,3-sialyltransferase 3 (ST3GAL3), transcript variant 24, non-coding RNA"	Chr1	 44173204	 44175190	+	6487	NR_073021.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0005931	2.170052	A	2.444787	A	0.826602137799799	0	lncRNA	TCONS_00015252	NA	NA	NA	NA	XLOC_006738	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006738), lincRNA [TCONS_00015252]"	chr8:22408413-22408472	hs|8p21.3	Agilent_HUMAN_G3V2	TCONS_00015252	TCONS_00015252	chr8	 22408413	 22408472	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001050	6.29704	P	6.7411356	P	0.735044958921695	0	lncRNA	ENST00000417262	XR_108330	XR_108330	NA	NA	XLOC_000527	NA	ENST00000417262	THC2651263	NA	"PREDICTED: Homo sapiens hypothetical LOC100506696, transcript variant 2 (LOC100506696), miscRNA [XR_108330]"	chr1:202780982-202781041	hs|1q32.1	Agilent_HUMAN_G3V2	ENST00000417262	ENST00000417262	chr1	202780982	202781041	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006443	0.8800454	A	0.8812182	A	0.999187407319034	0	lncRNA	ENST00000453902	NA	NA	NA	NA	XLOC_008124	NA	ENST00000453902	NA	NA	"BROAD Institute lincRNA (XLOC_008124), lincRNA [TCONS_00017043]"	chrX:18000624-17990230	hs|Xp22.13	Agilent_HUMAN_G3V2	ENST00000453902	ENST00000453902	chrX	 17990230	 18000624	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47121_PI429285431	3.4350202	P	3.983164	P	0.683899481170864	0	lncRNA	51202-2_{3001..5006}	"gi|395759231|ref|NR_073032.1| Homo sapiens sprouty-related, EVH1 domain containing 3 (SPRED3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">gi|395759231|ref|NR_073032.1| Homo sapiens sprouty-related, EVH1 domain containing 3 (SPRED3), transcript variant 2, non-coding RNA"	Chr19	 38883932	 38885937	+	399473	NR_073032.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60"	NA	inter
CUST_48222_PI429285431	5.7266364	P	5.7553163	P	0.980316900410549	0	lncRNA	52085-1_{1..1534}	hg19_lincRNAsTranscripts_TCONS_l2_00001488 range=chr1:142804652-142891271 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001488 range=chr1:142804652-142891271 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	142804652	142806185	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44365_PI429285431	0.8922529	A	1.1507995	A	0.835929627699612	0	lncRNA	48984-1_{1..1133}	"gi|325651899|ref|NR_037934.1| Homo sapiens uncharacterized LOC285540 (LOC285540), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|325651899|ref|NR_037934.1| Homo sapiens uncharacterized LOC285540 (LOC285540), non-coding RNA"	Chr4	 25162294	 25163426	+	285540	NR_037934.1	NA	NA	NA	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80"	NA	inter
CUST_3722_PI429285431	0.9008567	A	0.890513	A	1.0071954703735	0	lncRNA	3691-1_{1..748}	"transcript_id ""ENST00000600848.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600848.1"" | genecode_v17"	chr10	 67375495	 67376242	+	ENSG00000228065.5	ENST00000600848.1	RP11-222A11.1	RP11-222A11.1-014	NA	NA	NA	inter
CUST_24410_PI429285431	3.0262103	P	3.0769649	P	0.965431229134253	0	lncRNA	25963-1_{1..738}	lnc-JOSD1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JOSD1-1:2	chr22	 39077731	 39078468	-	lnc-JOSD1-1	lnc-JOSD1-1:2	ENSG00000228274.1	RP3-508I15.9	CBY1	NA	chr22:39067731-39069855	inter
CUST_15644_PI429285431	2.2118533	A	2.4678876	A	0.837386578449155	0	lncRNA	17336-1_{1..373}	lnc-PALLD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PALLD-1:1	chr4	169931935	169932307	+	lnc-PALLD-1	lnc-PALLD-1:1	XLOC_003771	linc-CLCN3	CBR4	NA	chr4:169921935-169931468	inter
CUST_13016_PI429285431	5.309205	P	5.8075366	P	0.70792498554353	0	lncRNA	14643-1_{1..467}	lnc-WDR60-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR60-2:1	chr7	158762648	158763114	+	lnc-WDR60-2	lnc-WDR60-2:1	XLOC_006320	TCONS_00013658	NA	NA	NA	inter
LNCA_21_P0007956	1.9410121	A	1.0395399	A	1.8679711844104	0	lncRNA	ENST00000424165	NA	NA	NA	NA	XLOC_010466	NA	ENST00000424165	THC2721895	NA	"BROAD Institute lincRNA (XLOC_010466), lincRNA [TCONS_00021583]"	chr13:89194623-89194682	hs|13q31.2	Agilent_HUMAN_G3V2	ENST00000424165	ENST00000424165	chr13	 89194623	 89194682	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27857_PI429285431	0.8778671	A	0.900045	A	0.984745005631847	0	lncRNA	29450-1_{1..415}	n325093|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322958|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322958|-0.6164330|-0.2572913	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325093|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322958|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322958|-0.6164330|-0.2572913	chr2	242278501	242278915	+	NA	NA	NA	NA	2-Sep	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-25.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-61.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00chr2:242268501-242292377"	NA	inner
LNCA_21_P0001380	0.8792448	A	0.88280404	A	0.997535963562859	0	lncRNA	TCONS_00001180	NA	NA	NA	NA	XLOC_000443	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000443), lincRNA [TCONS_00001180]"	chr1:162005157-162009182	hs|1q23.3	Agilent_HUMAN_G3V2	TCONS_00001180	TCONS_00001180	chr1	162005157	162009182	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29204_PI429285431	3.1313975	A	4.0697827	P	0.521816619918363	0	lncRNA	30951-1_{1..3000}	n326721|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001812|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001812|-0.7586070|-0.1998298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326721|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001812|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001812|-0.7586070|-0.1998298	chr1	  3907068	  3910067	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28321_PI429285431	1.1595001	A	0.88928854	A	1.20598466298996	0	lncRNA	29966-1_{1..428}	n325626|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045819|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045819|-1.0714000|-0.2853205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325626|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045819|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045819|-1.0714000|-0.2853205	chr13	111808409	111808836	-	NA	NA	NA	NA	ARHGEF7	NA	chr13:111798409-111819197	inner
CUST_50949_PI429285431	0.8747858	A	1.0008575	A	0.916323103519877	0	lncRNA	54590-1_{1..882}	hg19_lincRNAsTranscripts_TCONS_l2_00006289 range=chr12:58959747-58965232 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006289 range=chr12:58959747-58965232 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 58959747	 58960628	-	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10"	NA	inter
CUST_26473_PI429285431	2.6090739	A	2.9203904	A	0.805906011564874	0	lncRNA	27981-1_{1..964}	lnc-SMYD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SMYD3-1:1	chr1	246687499	246688462	-	lnc-SMYD3-1	lnc-SMYD3-1:1	ENSG00000242042.1	RP11-690C23.2	NA	NA	NA	inter
CUST_41765_PI429285431	0.91045856	A	0.8978717	A	1.00876271630102	0	lncRNA	43327-1_{1..91}	ENST00000362195 ncrna:miRNA chromosome:GRCh37:9:4850291:4850381:1 gene:ENSG00000199065 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362195 ncrna:miRNA chromosome:GRCh37:9:4850291:4850381:1 gene:ENSG00000199065 gene_biotype:miRNA transcript_biotype:miRNA	chr9	  4850291	  4850381	+	ENSG00000199065	ENST00000362195	NA	NA	RCL1	NA	chr9:4840291-4860381	inner
CUST_49850_PI429285431	4.6862063	P	3.9642012	P	1.64947292818016	0	lncRNA	53603-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026658 range=chr7:65990896-66038537 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026658 range=chr7:65990896-66038537 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 65990896	 65993895	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.01;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90"	NA	inter
CUST_38255_PI429285431	8.637291	P	8.504969	P	1.09605637168911	0	lncRNA	39313-1_{1..1135}	n381785|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pxz.1||-1.0671400|-0.1898829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n381785|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pxz.1||-1.0671400|-0.1898829	chr11	121899036	121900170	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30114_PI429285431	1.785441	A	2.4386294	A	0.635873459915633	0	lncRNA	31887-1_{1..281}	n334672|AJ000095|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243791|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243791|0.5602700|-0.3868437	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334672|AJ000095|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243791|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243791|0.5602700|-0.3868437	chr21	 37510116	 37510396	+	NA	NA	NA	NA	CBR3	NA	chr21:37504692-37518860	inter
CUST_4113_PI429285431	8.131102	P	8.204942	P	0.95010574713132	0	lncRNA	4074-1_{1..431}	"transcript_id ""ENST00000602376.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602376.1"" | genecode_v17"	chr11	130184888	130185318	+	ENSG00000175773.8	ENST00000602376.1	RP11-121M22.1	RP11-121M22.1-002	ZBTB44	NA	chr11:130174888-130184607	inter
CUST_1906_PI429285431	1.5193801	A	1.6437193	A	0.917424156291179	0	lncRNA	1897-1_{1..396}	"transcript_id ""ENST00000505454.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505454.1"" | genecode_v17"	chr4	138566419	138566814	-	ENSG00000250126.1	ENST00000505454.1	RP13-884E18.2	RP13-884E18.2-001	NA	NA	NA	inter
CUST_38510_PI429285431	7.003929	P	7.1267157	P	0.918411937901434	0	lncRNA	39521-1_{1..771}	n383078|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gvb.1||2.7869700|-0.1666976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383078|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gvb.1||2.7869700|-0.1666976	chr17	 19122455	 19123225	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014552	5.199721	P	4.9634833	P	1.17791684846565	0	lncRNA	XR_110280	XR_110280	XR_110280	NA	NA	LOC100289251	uncharacterized LOC100289251	NA	THC2716660	NA	"PREDICTED: Homo sapiens hypothetical LOC100289251 (LOC100289251), miscRNA [XR_110280]"	chr14:35872232-35872291	hs|14q13.2	Agilent_HUMAN_G3V2	XR_110280	XR_110280	chr14	 35872232	 35872291	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13436_PI429285431	7.5392385	P	7.568155	P	0.980156142971215	0	lncRNA	15075-1_{1..337}	lnc-GUSB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GUSB-2:1	chr7	 65565194	 65565530	-	lnc-GUSB-2	lnc-GUSB-2:1	XLOC_006476	linc-GUSB-5	ASL	NA	chr7:65555194-65558330	inter
CUST_19848_PI429285431	0.9029176	A	1.0654263	A	0.89347006571497	0	lncRNA	21505-1_{1..571}	lnc-SAP30-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:5	chr4	174512224	174512794	+	lnc-SAP30-5	lnc-SAP30-5:5	ENSG00000237125.3	RP11-471J12.1	NA	NA	NA	inter
CUST_35114_PI429285431	0.89261895	A	0.9019952	A	0.993521952358766	0	lncRNA	36520-1_{1..3000}	n342083|BX538191|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4565|NULL|-1.3173100|-0.3637064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342083|BX538191|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4565|NULL|-1.3173100|-0.3637064	chr6	 88849656	 88852655	-	NA	NA	NA	NA	CNR1	NA	chr6:88849583-88862666	inner
CUST_44619_PI429285431	1.3588797	A	1.9749103	A	0.652463634745851	0	lncRNA	49187-2_{3001..3487}	"gi|323668272|ref|NR_037897.1| Homo sapiens uncharacterized LOC386627 (FLJ38109), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|323668272|ref|NR_037897.1| Homo sapiens uncharacterized LOC386627 (FLJ38109), non-coding RNA"	Chr5	153772329	153772815	-	386627	NR_037897.1	NA	NA	NA	NA	NA	inter
CUST_44459_PI429285431	0.8876897	A	1.516855	A	0.646550381748529	0	lncRNA	49063-1_{1..2865}	"gi|387763686|ref|NR_048571.1| Homo sapiens glycoprotein M6A (GPM6A), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387763686|ref|NR_048571.1| Homo sapiens glycoprotein M6A (GPM6A), transcript variant 6, non-coding RNA"	Chr4	176554088	176556952	-	2823	NR_048571.1	NA	NA	NA	NA	NA	inter
CUST_9601_PI429285431	1.0321336	A	0.93027127	A	1.07315787480277	0	lncRNA	11116-1_{1..1168}	lnc-SOCS6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOCS6-3:1	chr18	 68437195	 68438362	+	lnc-SOCS6-3	lnc-SOCS6-3:1	XLOC_012710	linc-C18orf55-8	NA	NA	NA	inter
CUST_12234_PI429285431	6.632191	P	7.2178717	P	0.666334870723676	0	lncRNA	13840-1_{1..1278}	lnc-TRAPPC11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRAPPC11-1:1	chr4	184687333	184688610	+	lnc-TRAPPC11-1	lnc-TRAPPC11-1:1	XLOC_003804	linc-STOX2	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00"	NA	inter
CUST_7711_PI429285431	3.254458	A	0.9143643	A	5.06335521944412	0	lncRNA	9344-1_{1..3000}	lnc-PPM1H-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPM1H-1:1	chr12	 63398590	 63401589	-	lnc-PPM1H-1	lnc-PPM1H-1:1	ENSG00000250314	ENST00000514535	NA	"hg19_refFlat_LDHAL6B:range=chr15:59499140-595002855'pad=0,hg19_refFlat_LDHAL6B:range=chr15:59499140-595002855'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00"	NA	inter
CUST_28817_PI429285431	0.90085757	A	0.90683746	A	0.995863634529928	0	lncRNA	30525-1_{1..245}	n326229|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090919|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090919|-0.9079890|-0.3410058	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326229|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090919|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090919|-0.9079890|-0.3410058	chr1	218599695	218599939	-	NA	NA	NA	NA	TGFB2	NA	chr1:218589695-218610148	inner
LNCA_21_P0010079	10.170162	P	9.656749	P	1.42742307533222	0	lncRNA	TCONS_00028493	NA	NA	NA	NA	XLOC_013449	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013449), lincRNA [TCONS_00028493]"	chr20:5479042-5479101	hs|20p12.3	Agilent_HUMAN_G3V2	TCONS_00028493	TCONS_00028493	chr20	  5479042	  5479101	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52099_PI429285431	2.318596	A	1.7809433	A	1.45160879203202	0	lncRNA	55625-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017565 range=chr22:17518149-17541166 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017565 range=chr22:17518149-17541166 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17518149	 17521148	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43015_PI429285431	3.447497	P	1.6939892	A	3.37177390661847	0	lncRNA	46270-1_{1..129}	ENST00000391216 ncrna:snRNA chromosome:GRCh37:14:29945990:29946118:1 gene:ENSG00000212518 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391216 ncrna:snRNA chromosome:GRCh37:14:29945990:29946118:1 gene:ENSG00000212518 gene_biotype:snRNA transcript_biotype:snRNA	chr14	 29945990	 29946118	+	ENSG00000212518	ENST00000391216	NA	NA	NA	NA	NA	inter
CUST_25491_PI429285431	2.575771	A	2.4968984	A	1.0561923521075	0	lncRNA	27021-1_{1..662}	lnc-OLR1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OLR1-3:1	chr12	 10372274	 10372935	-	lnc-OLR1-3	lnc-OLR1-3:1	ENSG00000245856.3	RP11-656E20.4	GABARAPL1	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.60;hg19_refFlat_GABARAPL1:range=chr12:10365729-103744515'pad=0,hg19_refFlat_GABARAPL1:range=chr12:10365729-103744515'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40chr12:10365489-10375727"	NA	inner
CUST_2627_PI429285431	0.89170194	A	0.905702	A	0.990342830745823	0	lncRNA	2614-1_{1..2515}	"transcript_id ""ENST00000457339.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457339.1"" | genecode_v17"	chr6	133409219	133411733	+	ENSG00000231023.2	ENST00000457339.1	LINC00326	LINC00326-002	NA	NA	NA	inter
CUST_37047_PI429285431	1.7022326	A	1.5824472	A	1.08657322340581	0	lncRNA	38184-1_{1..1707}	n345501|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1050|NULL|-1.2747500|-0.4083482	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n345501|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1050|NULL|-1.2747500|-0.4083482	chr2	 70223817	 70225523	-	NA	NA	NA	NA	PCBP1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50chr2:70314585-70316335"	NA	inter
CUST_15230_PI429285431	1.5913175	A	1.0669451	A	1.43830775245177	0	lncRNA	16900-1_{1..708}	lnc-RALA-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RALA-1:3	chr7	 39821706	 39822413	+	lnc-RALA-1	lnc-RALA-1:3	XLOC_006058	linc-CDK13-1	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40"	NA	inter
CUST_34908_PI429285431	1.6172131	A	1.254447	A	1.28588898904421	0	lncRNA	36332-1_{1..2603}	n341826|AK056236|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4305|NULL|-1.0400300|-0.2642084	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341826|AK056236|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4305|NULL|-1.0400300|-0.2642084	chr6	 36819836	 36822438	-	NA	NA	NA	NA	PPIL1	"hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00chr6:36822605-36832439"	NA	inter
LNCA_21_P0008010	0.8862058	A	0.89776564	A	0.99201934537262	0	lncRNA	ENST00000445027	NA	NA	NA	NA	XLOC_010684	NA	ENST00000445027	NA	NA	"BROAD Institute lincRNA (XLOC_010684), lincRNA [TCONS_00021681]"	chr13:89867224-89867165	hs|13q31.2	Agilent_HUMAN_G3V2	ENST00000445027	ENST00000445027	chr13	 89867165	 89867224	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31222_PI429285431	0.9028377	A	0.8988372	A	1.00277678343697	0	lncRNA	33013-1_{1..359}	n337670|L25446|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|52|NULL|-1.0764700|-0.3582978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337670|L25446|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|52|NULL|-1.0764700|-0.3582978	chr15	 25658543	 25658901	+	NA	NA	NA	NA	SNRPN	NA	chr15:25648543-25664609	inner
CUST_1821_PI429285431	4.952889	P	4.8768234	P	1.05413935439713	0	lncRNA	1808-1_{1..588}	"transcript_id ""ENST00000603220.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603220.1"" | genecode_v17"	chr4	 90040435	 90041022	+	ENSG00000270720.1	ENST00000603220.1	RP11-84C13.2	RP11-84C13.2-001	TIGD2	NA	chr4:90033968-90036052	inter
CUST_8201_PI429285431	3.7709105	P	3.9669511	P	0.872943024621442	0	lncRNA	9797-2_{3001..5586}	lnc-RHBG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RHBG-1:1	chr1	156362954	156365539	+	lnc-RHBG-1	lnc-RHBG-1:1	ENSG00000237390	XLOC_000423	C1orf61	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20chr1:156374055-156375401"	NA	inter
CUST_14220_PI429285431	1.3748106	A	0.9087994	A	1.38128517136216	0	lncRNA	15876-1_{1..219}	lnc-ZP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZP2-1:1	chr16	 21244813	 21245031	-	lnc-ZP2-1	lnc-ZP2-1:1	XLOC_011893	linc-ZP2	ANKS4B	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-60.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40chr16:21245016-21254853"	NA	inter
LNCA_21_P0004652	0.88241726	A	0.89147437	A	0.993741754645074	0	lncRNA	ENST00000436113	NA	NA	NA	NA	XLOC_005298	NA	ENST00000436113	NA	NA	"BROAD Institute lincRNA (XLOC_005298), lincRNA [TCONS_00011306]"	chr6:44494374-44494433	hs|6p21.1	Agilent_HUMAN_G3V2	ENST00000436113	ENST00000436113	chr6	 44494374	 44494433	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25161_PI429285431	3.7924287	P	4.535659	P	0.597400230744842	0	lncRNA	26698-1_{1..416}	lnc-ATP6V1G3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATP6V1G3-2:1	chr1	198636128	198636543	-	lnc-ATP6V1G3-2	lnc-ATP6V1G3-2:1	ENSG00000261573.1	RP11-553K8.5	PTPRC	NA	chr1:198626128-198646190	inner
CUST_41558_PI429285431	5.3118906	P	4.762453	P	1.46351506854259	0	lncRNA	42858-1_{1..83}	ENST00000581765 ncrna:miRNA chromosome:GRCh37:5:140027429:140027511:1 gene:ENSG00000264052 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581765 ncrna:miRNA chromosome:GRCh37:5:140027429:140027511:1 gene:ENSG00000264052 gene_biotype:miRNA transcript_biotype:miRNA	chr5	140027429	140027511	+	ENSG00000264052	ENST00000581765	NA	NA	IK	NA	chr5:140027384-140037511	inner
CUST_50038_PI429285431	5.520984	P	4.4068003	P	2.16472490838762	0	lncRNA	53774-1_{1..923}	hg19_lincRNAsTranscripts_TCONS_l2_00028184 range=chr8:47490845-47526150 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028184 range=chr8:47490845-47526150 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 47490845	 47491767	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7846_PI429285431	1.1392655	A	0.8881558	A	1.19012218766956	0	lncRNA	9470-1_{1..566}	lnc-TP53INP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TP53INP1-1:1	chr8	 96085157	 96085722	-	lnc-TP53INP1-1	lnc-TP53INP1-1:1	ENSG00000245080	RP11-320N21.1	NA	NA	NA	inter
CUST_48499_PI429285431	1.997256	A	2.4299407	A	0.740881800521139	0	lncRNA	52352-1_{1..1006}	hg19_lincRNAsTranscripts_TCONS_l2_00000941 range=chr1:247343765-247349239 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000941 range=chr1:247343765-247349239 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	247343765	247344770	+	NA	NA	NA	NA	ZNF124	"hg19_refFlat_PEX5:range=chr12:7342974-73628195'pad=0,hg19_refFlat_PEX5:range=chr12:7342974-73628195'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30chr1:247333765-247335318"	NA	inter
CUST_12966_PI429285431	1.7743527	A	0.8764415	A	1.86336616215397	0	lncRNA	14593-1_{1..327}	lnc-STIM2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STIM2-3:2	chr4	 27995111	 27995437	+	lnc-STIM2-3	lnc-STIM2-3:2	XLOC_003486	linc-PCDH7-7	NA	NA	NA	inter
CUST_17828_PI429285431	4.26561	P	4.5118003	P	0.84311989041991	0	lncRNA	19563-1_{1..633}	lnc-CHGA-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CHGA-1:5	chr14	 93359101	 93359733	+	lnc-CHGA-1	lnc-CHGA-1:5	XLOC_010908	linc-CHGA	NA	NA	NA	inter
CUST_27182_PI429285431	5.6033554	P	5.4613366	P	1.10344811916498	0	lncRNA	28722-1_{1..1122}	n324311|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043033|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043033|-1.0280600|-0.2828211	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324311|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043033|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043033|-1.0280600|-0.2828211	chr6	166087666	166088787	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18623_PI429285431	10.0844555	P	10.158328	P	0.950084344071003	0	lncRNA	20328-1_{1..746}	lnc-FOXG1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXG1-4:3	chr14	 27930655	 27931400	+	lnc-FOXG1-4	lnc-FOXG1-4:3	ENSG00000258081	RP11-384J4.2	NA	NA	NA	inter
LNCA_19_P00318909	5.548	P	5.9051547	P	0.780702773462879	0	lncRNA	TCONS_l2_00020645	NA	NA	NA	NA	XLOC_l2_010751	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010751), lincRNA [TCONS_l2_00020645]"	chr4:90606577-90606636	hs|4q22.1	Agilent_HUMAN_G3V2	TCONS_l2_00020645	TCONS_l2_00020645	chr4	 90606577	 90606636	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25814_PI429285431	1.9218631	A	1.1525546	A	1.70445262435359	0	lncRNA	27335-1_{1..430}	lnc-HADH-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HADH-1:7	chr4	109177801	109178230	+	lnc-HADH-1	lnc-HADH-1:7	ENSG00000232021.2	LEF1-AS1	NA	NA	NA	inter
CUST_4837_PI429285431	0.8905684	A	1.043354	A	0.899511979370159	0	lncRNA	4780-1_{1..807}	"transcript_id ""ENST00000555316.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555316.1"" | genecode_v17"	chr14	 57226097	 57226903	+	ENSG00000258703.1	ENST00000555316.1	RP11-1085N6.4	RP11-1085N6.4-001	NA	NA	NA	inter
CUST_20579_PI429285431	1.4071941	A	0.89770025	A	1.42355067451854	0	lncRNA	22220-1_{1..1932}	lnc-ADAM19-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAM19-1:2	chr5	156811221	156813152	-	lnc-ADAM19-1	lnc-ADAM19-1:2	ENSG00000248544.2	CTB-47B11.3	CYFIP2	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70chr5:156801221-156821947"	NA	inner
LNCA_21_P0002359	0.87804234	A	0.8790224	A	0.999320904863768	0	lncRNA	TCONS_00004035	NA	NA	NA	NA	XLOC_001873	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001873), lincRNA [TCONS_00004035]"	chr2:221605336-221605395	hs|2q36.1	Agilent_HUMAN_G3V2	TCONS_00004035	TCONS_00004035	chr2	221605336	221605395	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19128_PI429285431	2.0607014	A	1.8648819	A	1.14537458768846	0	lncRNA	20808-1_{1..1386}	lnc-MON1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-MON1A-1:1	chr3	 50137035	 50138420	-	lnc-MON1A-1	lnc-MON1A-1:1	LUST	Je2	RBM5	"hg19_refFlat_RBM5:range=chr3:50127868-501558895'pad=0,hg19_refFlat_RBM5:range=chr3:50127868-501558895'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_RBM10:range=chrX:47006881-470459985'pad=0,hg19_refFlat_RBM10:range=chrX:47006881-470459985'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.30;hg19_refFlat_RBM10:range=chrX:47004846-470459985'pad=0,hg19_refFlat_RBM10:range=chrX:47004846-470459985'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.30chr3:50127035-50148421"	NA	inner
CUST_27682_PI429285431	0.88459617	A	0.8906459	A	0.995815426536674	0	lncRNA	29260-1_{1..790}	n324889|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158274|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158274|-1.0826000|-0.2598938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324889|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158274|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158274|-1.0826000|-0.2598938	chr21	 19340499	 19341288	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_46878_PI429285431	3.3678594	P	4.8077545	P	0.368594104245674	0	lncRNA	51004-3_{6001..7882}	"gi|373838809|ref|NR_046056.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 32, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373838809|ref|NR_046056.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 32, non-coding RNA"	Chr17	 48644429	 48646310	+	8913	NR_046056.1	NA	NA	NA	NA	NA	inter
CUST_41911_PI429285431	8.50632	P	8.481324	P	1.01747687105388	0	lncRNA	43647-1_{1..84}	ENST00000517000 ncrna:miRNA chromosome:GRCh37:16:31120551:31120634:1 gene:ENSG00000252809 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517000 ncrna:miRNA chromosome:GRCh37:16:31120551:31120634:1 gene:ENSG00000252809 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 31120551	 31120634	+	ENSG00000252809	ENST00000517000	NA	NA	KAT8	NA	chr16:31128985-31130634	inner
LNCA_21_P0003614	2.1949477	A	1.2210726	A	1.96410914221839	0	lncRNA	TCONS_00008088	NA	NA	NA	NA	XLOC_003550	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003550), lincRNA [TCONS_00008088]"	chr4:59433781-59433840	hs|4q12	Agilent_HUMAN_G3V2	TCONS_00008088	TCONS_00008088	chr4	 59433781	 59433840	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27580_PI429285431	7.388256	P	7.33551	P	1.03723730512823	0	lncRNA	29158-1_{1..912}	n324782|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000195852|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000195852|-0.7279190|-0.3719595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324782|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000195852|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000195852|-0.7279190|-0.3719595	chr21	 44729887	 44730798	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20131_PI429285431	2.3235645	A	2.3724234	A	0.966700638729175	0	lncRNA	21778-1_{1..743}	lnc-DRD2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DRD2-1:3	chr11	113154579	113155321	-	lnc-DRD2-1	lnc-DRD2-1:3	ENSG00000255129.1	RP11-839D17.3	NCAM1	NA	chr11:113144579-113149158	inter
CUST_3626_PI429285431	2.1845212	A	1.286007	A	1.86414515190092	0	lncRNA	3596-1_{1..435}	"transcript_id ""ENST00000434386.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434386.1"" | genecode_v17"	chr10	 16320700	 16321134	+	ENSG00000226140.1	ENST00000434386.1	RP11-461K13.1	RP11-461K13.1-002	NA	NA	NA	inter
CUST_4525_PI429285431	3.6159158	P	3.4075675	P	1.15536468268209	0	lncRNA	4473-1_{1..616}	"transcript_id ""ENST00000585405.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585405.1"" | genecode_v17"	chr12	131152014	131152629	+	ENSG00000256343.2	ENST00000585405.1	RP11-662M24.1	RP11-662M24.1-002	NA	NA	NA	inter
CUST_39682_PI429285431	4.5435	P	5.0426645	P	0.707516402625432	0	lncRNA	40622-1_{1..2020}	n405393|NR_002139_5|lncRNA|Homosapiens||RefGeneNoncode|NR_002139_5||-1.0946600|-0.3378764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405393|NR_002139_5|lncRNA|Homosapiens||RefGeneNoncode|NR_002139_5||-1.0946600|-0.3378764	chr6	  1062457	  1064476	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26179_PI429285431	0.89773875	A	0.8934866	A	1.00295171353677	0	lncRNA	27690-1_{1..414}	lnc-CHAC1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHAC1-3:1	chr15	 41305225	 41305638	+	lnc-CHAC1-3	lnc-CHAC1-3:1	ENSG00000259463.1	RP11-540O11.7	INO80	NA	chr15:41295225-41315498	inner
CUST_27322_PI429285431	0.8868562	A	0.882659	A	1.00291351340054	0	lncRNA	28882-1_{1..454}	n324477|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041164|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041164|-1.1350300|-0.4609411	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324477|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041164|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041164|-1.1350300|-0.4609411	chr6	 72217257	 72217710	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37881_PI429285431	2.2400324	A	1.3385199	A	1.86802336473127	0	lncRNA	38972-1_{1..510}	n346417|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1967|NULL|-1.5452700|-0.1428976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346417|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1967|NULL|-1.5452700|-0.1428976	chrX	135991566	135992075	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42700_PI429285431	0.90323174	A	0.8936294	A	1.00667803419115	0	lncRNA	45626-1_{1..73}	ENST00000390927 ncrna:snoRNA chromosome:GRCh37:6:67920301:67920373:-1 gene:ENSG00000212229 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390927 ncrna:snoRNA chromosome:GRCh37:6:67920301:67920373:-1 gene:ENSG00000212229 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	 67920301	 67920373	-	ENSG00000212229	ENST00000390927	NA	NA	NA	NA	NA	inter
CUST_17942_PI429285431	1.4035885	A	0.878826	A	1.43869671872862	0	lncRNA	19673-2_{3001..3270}	lnc-C3orf38-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C3orf38-2:3	chr3	 88517238	 88517507	+	lnc-C3orf38-2	lnc-C3orf38-2:3	XLOC_002727	linc-EPHA3	NA	NA	NA	inter
CUST_30352_PI429285431	4.1581993	P	4.3393064	P	0.882025884637524	0	lncRNA	32128-1_{1..331}	n335446|AY684333|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257116_09|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257116_09|-1.2445700|-0.1430198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335446|AY684333|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257116_09|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257116_09|-1.2445700|-0.1430198	chr6	  3752376	  3752706	-	NA	NA	NA	NA	C6orf145	"hg19_refFlat_FUNDC1:range=chrX:44383444-444020785'pad=0,hg19_refFlat_FUNDC1:range=chrX:44383444-444020785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10chr6:3742376-3752246"	NA	inter
CUST_41838_PI429285431	4.653321	P	4.945644	P	0.816586147995998	0	lncRNA	43462-1_{1..67}	ENST00000585012 ncrna:miRNA chromosome:GRCh37:9:139725409:139725475:1 gene:ENSG00000265806 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585012 ncrna:miRNA chromosome:GRCh37:9:139725409:139725475:1 gene:ENSG00000265806 gene_biotype:miRNA transcript_biotype:miRNA	chr9	139725409	139725475	+	ENSG00000265806	ENST00000585012	NA	NA	C9orf86	NA	chr9:139715409-139735475	inner
LNCA_21_P0006150	0.87687033	A	0.8810642	A	0.997097251977496	0	lncRNA	TCONS_00016002	NA	NA	NA	NA	XLOC_007393	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007393), lincRNA [TCONS_00016002]"	chr9:72409143-72409202	hs|9q21.12	Agilent_HUMAN_G3V2	TCONS_00016002	TCONS_00016002	chr9	 72409143	 72409202	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43050_PI429285431	0.90722847	A	1.0906881	A	0.88058878156157	0	lncRNA	46726-1_{1..182}	ENST00000365559 ncrna:snRNA chromosome:GRCh37:2:128229810:128229991:1 gene:ENSG00000202429 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365559 ncrna:snRNA chromosome:GRCh37:2:128229810:128229991:1 gene:ENSG00000202429 gene_biotype:snRNA transcript_biotype:snRNA	chr2	128229810	128229991	+	ENSG00000202429	ENST00000365559	NA	NA	IWS1	NA	chr2:128238383-128239991	inter
CUST_32857_PI429285431	9.606985	P	9.90173	P	0.815216411233134	0	lncRNA	34488-2_{3001..3363}	n339520|AK126748|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1961|NULL|-0.8176490|-0.1864722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339520|AK126748|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1961|NULL|-0.8176490|-0.1864722	chr3	126694907	126695269	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46845_PI429285431	8.799058	P	8.851182	P	0.964515280691505	0	lncRNA	50981-2_{3001..5029}	"gi|345110651|ref|NR_045058.1| Homo sapiens upstream binding transcription factor, RNA polymerase I (UBTF), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|345110651|ref|NR_045058.1| Homo sapiens upstream binding transcription factor, RNA polymerase I (UBTF), transcript variant 4, non-coding RNA"	Chr17	 42285401	 42287429	-	7343	NR_045058.1	NA	NA	NA	NA	NA	inter
CUST_14848_PI429285431	0.9161123	A	1.1190739	A	0.868765308640296	0	lncRNA	16510-1_{1..1991}	lnc-HNRPLL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HNRPLL-1:1	chr2	 38768888	 38770878	-	lnc-HNRPLL-1	lnc-HNRPLL-1:1	XLOC_002054	linc-ATL2-1	NA	NA	NA	inter
CUST_19228_PI429285431	2.4268098	A	2.217723	A	1.1559562527732	0	lncRNA	20898-1_{1..627}	lnc-CEACAM18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CEACAM18-1:1	chr19	 51919683	 51920309	+	lnc-CEACAM18-1	lnc-CEACAM18-1:1	ENSG00000255441.1	CTD-2616J11.2	SIGLEC10	"hg19_refFlat_SIGLEC10:range=chr19:51914353-519208355'pad=0,hg19_refFlat_SIGLEC10:range=chr19:51914353-519208355'pad=0 3'pad=0 strand=- repeatMasking=none,-106.50;hg19_refFlat_SIGLEC11:range=chr19:50453227-504643385'pad=0,hg19_refFlat_SIGLEC11:range=chr19:50453227-504643385'pad=0 3'pad=0 strand=- repeatMasking=none,-99.10chr19:51909683-51921057"	NA	inner
CUST_43276_PI429285431	6.462968	P	6.9928217	P	0.692624967813972	0	lncRNA	48094-2_{3001..4026}	ENST00000568093 havana:sense_intronic chromosome:GRCh37:15:40524283:40528308:1 gene:ENSG00000260648 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000568093 havana:sense_intronic chromosome:GRCh37:15:40524283:40528308:1 gene:ENSG00000260648 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr15	 40527283	 40528308	+	ENSG00000260648	ENST00000568093	NA	NA	PAK6	NA	chr15:40514283-40538308	inner
CUST_7692_PI429285431	0.8935709	A	0.90148205	A	0.99453141612529	0	lncRNA	9325-1_{1..1175}	lnc-ATP2A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ATP2A1-1:1	chr16	 28936392	 28937566	+	lnc-ATP2A1-1	lnc-ATP2A1-1:1	ENSG00000245192	AC109460.2	CD19	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30chr16:28943260-28946455"	NA	inner
LNCA_21_P0003291	0.9027084	A	0.9277527	A	0.982790420106409	0	lncRNA	TCONS_00007208	NA	NA	NA	NA	XLOC_003187	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003187), lincRNA [TCONS_00007208]"	chr3:97954593-97954534	hs|3q11.2	Agilent_HUMAN_G3V2	TCONS_00007208	TCONS_00007208	chr3	 97954534	 97954593	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36030_PI429285431	6.9250727	P	7.0911455	P	0.891265520510529	0	lncRNA	37356-6_{15001..15844}	n344637|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_185|NULL|-1.3340200|-0.3109463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344637|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_185|NULL|-1.3340200|-0.3109463	chr11	 65204792	 65205635	-	NA	NA	NA	NA	FRMD8	NA	chr11:65179792-65180996	inter
LNCA_21_P0001190	0.9053843	A	0.9281164	A	0.984366796198728	0	lncRNA	ENST00000422548	NA	NA	NA	NA	XLOC_001083	NA	ENST00000422548	THC2713298	NA	"BROAD Institute lincRNA (XLOC_001083), lincRNA [TCONS_00000672]"	chr1:168371291-168370724	hs|1q24.2	Agilent_HUMAN_G3V2	ENST00000422548	ENST00000422548	chr1	168370724	168371291	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002979	0.90526044	A	0.9275767	A	0.984650569329018	0	lncRNA	TCONS_00006098	NA	NA	NA	NA	XLOC_002709	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002709), lincRNA [TCONS_00006098]"	chr3:75289559-75289618	hs|3p12.3	Agilent_HUMAN_G3V2	TCONS_00006098	TCONS_00006098	chr3	 75289559	 75289618	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38690_PI429285431	3.076747	A	3.5513399	P	0.719669837947195	0	lncRNA	39687-1_{1..2214}	n384085|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zos.2||0.3463780|-0.2275784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384085|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zos.2||0.3463780|-0.2275784	chr22	 19033674	 19035887	-	NA	NA	NA	NA	DGCR2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90chr22:19023795-19045888"	NA	inter
CUST_30175_PI429285431	0.9008107	A	0.9087477	A	0.994513596415609	0	lncRNA	31949-1_{1..906}	n334868|AJ406940|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247510|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247510|1.6024200|-0.1596271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334868|AJ406940|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247510|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247510|1.6024200|-0.1596271	chr17	 39253217	 39254122	-	NA	NA	NA	NA	KRTAP4-9	NA	chr17:39261641-39262740	inner
CUST_73_PI429201921	1.461784	A	1.7208174	A	0.835647612523238	0	lncRNA	75-1_{1..2239}	TC21000797.hg.1	TCONS_00028776-XLOC_013987 // Rinn lincRNAs // linc-COL6A2-3 chr21:+:47456965-47459205 // chr21 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr21:+:47456965-47459205	NA	Affy_HUMAN_HTA2.0	TCONS_00028776-XLOC_013987	linc-COL6A2-3	chr21	 47456965	 47459205	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2603_PI429285431	5.1793056	P	5.5212846	P	0.788958324917892	0	lncRNA	2590-1_{1..465}	"transcript_id ""ENST00000458693.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458693.1"" | genecode_v17"	chr6	110147725	110148189	+	ENSG00000232311.1	ENST00000458693.1	RP1-249I4.2	RP1-249I4.2-001	FIG4	NA	chr6:110137725-110146634	inter
LNCA_21_P0004754	0.8990389	A	2.0931225	A	0.437063982879172	0	lncRNA	ENST00000457637	NA	NA	NA	NA	XLOC_005746	NA	ENST00000457637	NA	NA	"BROAD Institute lincRNA (XLOC_005746), lincRNA [TCONS_00011503]"	chr6:53247194-53247135	hs|6p12.1	Agilent_HUMAN_G3V2	ENST00000457637	ENST00000457637	chr6	 53247135	 53247194	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15329_PI429285431	7.271519	P	7.603829	P	0.794263713845903	0	lncRNA	17008-1_{1..773}	lnc-CNOT6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CNOT6-1:1	chr5	179910115	179910887	+	lnc-CNOT6-1	lnc-CNOT6-1:1	XLOC_004680	linc-CNOT6-1	NA	NA	NA	inter
CUST_17141_PI429285431	0.90027535	A	0.8996967	A	1.00040117006323	0	lncRNA	18850-1_{1..403}	lnc-C2orf73-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2orf73-1:1	chr2	 54610581	 54610983	+	lnc-C2orf73-1	lnc-C2orf73-1:1	XLOC_001473	linc-SPTBN1-3	NA	NA	NA	inter
LNCA_21_P0008501	5.1214895	P	5.595878	P	0.719771807477655	0	lncRNA	TCONS_00022899	NA	NA	NA	NA	XLOC_011152	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011152), lincRNA [TCONS_00022899]"	chr14:105533940-105533881	hs|14q32.33	Agilent_HUMAN_G3V2	TCONS_00022899	TCONS_00022899	chr14	105533881	105533940	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32410_PI429285431	0.8879676	A	0.8980262	A	0.993052158403428	0	lncRNA	34086-1_{1..1406}	n339004|AK098699|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1433|NULL|-0.8890180|-0.2841275	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339004|AK098699|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1433|NULL|-0.8890180|-0.2841275	chr2	171475137	171476542	-	NA	NA	NA	NA	SP5	"hg19_refFlat_SP5:range=chr2:171572023-1715739145'pad=0,hg19_refFlat_SP5:range=chr2:171572023-1715739145'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20chr2:171571857-171574498"	NA	inner
CUST_3692_PI429285431	7.5662937	P	7.789876	P	0.856436210555188	0	lncRNA	3660-1_{1..322}	"transcript_id ""ENST00000426412.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426412.2"" | genecode_v17"	chr10	 51214507	 51214828	-	ENSG00000214986.4	ENST00000426412.2	FAM25D	FAM25D-001	AGAP8	NA	chr10:51204507-51226406	inner
CUST_6890_PI429285431	1.1013564	A	2.157734	A	0.480837860026054	0	lncRNA	6840-1_{1..525}	"transcript_id ""ENST00000413721.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413721.1"" | genecode_v17"	chr21	 44881992	 44882516	-	ENSG00000185186.4	ENST00000413721.1	LINC00313	LINC00313-005	NA	NA	NA	inter
LNCA_21_P0014634	0.8849463	A	0.89586514	A	0.992460204783193	0	lncRNA	XR_110839	XR_110839	XR_110839	NA	NA	LOC100506213	NA	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506213 (LOC100506213), miscRNA [XR_110839]"	chr1:224027363-224031249	hs|1q41	Agilent_HUMAN_G3V2	XR_110839	XR_110839	chr1	224027363	224031249	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49407_PI429285431	4.3286557	P	4.86534	P	0.689353408822609	0	lncRNA	53214-3_{6001..6733}	hg19_lincRNAsTranscripts_TCONS_l2_00023256 range=chr5:175570064-175598935 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023256 range=chr5:175570064-175598935 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175576064	175576796	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20"	NA	inter
CUST_43882_PI429285431	8.426205	P	7.4955006	P	1.90620647970587	0	lncRNA	48601-1_{1..2225}	"gi|223633915|ref|NR_026846.1| Homo sapiens anaphase promoting complex subunit 1 pseudogene (LOC285074), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223633915|ref|NR_026846.1| Homo sapiens anaphase promoting complex subunit 1 pseudogene (LOC285074), non-coding RNA"	Chr2	 87257798	 87260022	-	285074	NR_026846.1	NA	NA	NA	NA	NA	inter
CUST_48055_PI429285431	0.8958941	A	1.2140479	A	0.802095653556062	0	lncRNA	51932-1_{1..2450}	"gi|310113653|ref|XR_112023.1| PREDICTED: Homo sapiens uncharacterized LOC100130249 (PP2672), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310113653|ref|XR_112023.1| PREDICTED: Homo sapiens uncharacterized LOC100130249 (PP2672), misc_RNA"	NA	NA	NA	NA	NA	XR_112023.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50"	NA	Unknown
CUST_33370_PI429285431	0.90012044	A	0.9084141	A	0.994267765267397	0	lncRNA	34950-1_{1..3000}	n340088|AK126491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2543|NULL|-0.8456580|-0.2794301	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340088|AK126491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2543|NULL|-0.8456580|-0.2794301	chr10	 80027098	 80030097	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24262_PI429285431	1.8716781	A	2.2018282	A	0.795453719337457	0	lncRNA	25813-1_{1..720}	lnc-GFM1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GFM1-1:2	chr3	158488795	158489514	+	lnc-GFM1-1	lnc-GFM1-1:2	ENSG00000240207.1	RP11-379F4.4	NA	"hg19_refFlat_RARRES1:range=chr3:158422565-1584502045'pad=0,hg19_refFlat_RARRES1:range=chr3:158422565-1584502045'pad=0 3'pad=0 strand=- repeatMasking=none,-95.20;hg19_refFlat_RARRES1:range=chr3:158415467-1584502045'pad=0,hg19_refFlat_RARRES1:range=chr3:158415467-1584502045'pad=0 3'pad=0 strand=- repeatMasking=none,-95.20"	NA	inter
CUST_144_PI429201921	0.8936841	A	1.3836224	A	0.712055549755966	0	lncRNA	127-2_{3001..3864}	TC19002574.hg.1	 TCONS_l2_00013221-XLOC_l2_007118 // Broad TUCP // linc-BIRC8-1 chr19:-:54103204-54105467 // chr19 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00013222-XLOC_l2_007118 // Broad TUCP // linc-BIRC8-1 chr19:-:54103302-54106654 // chr19 // 100 // 100 // 0 // --- // 0///TCONS_l2_00013402-XLOC_l2_007118 // Broad TUCP // linc-BIRC8-1 chr19:-:54102886-54106751 // chr19 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr19:-:54102886-54106751	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00013402-XLOC_l2_007118	linc-BIRC8-1	chr19	 54102886	 54106751	-	NA	NA	NA	NA	PRDM16	NA	chr1:2985742-2990350	Unknown
CUST_1797_PI429285431	0.88590705	A	0.9298353	A	0.970010150957882	0	lncRNA	1784-1_{1..763}	"transcript_id ""ENST00000502291.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000502291.1"" | genecode_v17"	chr4	 74374520	 74375282	+	ENSG00000250436.1	ENST00000502291.1	RP11-622A1.2	RP11-622A1.2-001	AFM	NA	chr4:74364520-74369718	inter
CUST_51465_PI429285431	2.9799337	P	2.4716463	A	1.42236073155816	0	lncRNA	55042-1_{1..353}	hg19_lincRNAsTranscripts_TCONS_l2_00009695 range=chr16:33391293-33401545 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009695 range=chr16:33391293-33401545 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 33391293	 33391645	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37037_PI429285431	0.8780407	A	0.88403064	A	0.995856697239382	0	lncRNA	38175-1_{1..500}	n345492|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1041|NULL|-1.3419800|-0.2889153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345492|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1041|NULL|-1.3419800|-0.2889153	chr1	249120869	249121368	-	NA	NA	NA	NA	SH3BP5L	NA	chr1:249110869-249120154	inter
CUST_36624_PI429285431	7.321845	P	7.244275	P	1.05523915326294	0	lncRNA	37818-1_{1..2236}	n345121|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_670|NULL|-1.3080700|-0.2357577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345121|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_670|NULL|-1.3080700|-0.2357577	chr10	 75361280	 75363515	+	NA	NA	NA	NA	MYOZ1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70chr10:75391412-75396426"	NA	inter
LNCA_21_P0012202	0.87686354	A	0.8788482	A	0.998625284305144	0	lncRNA	TCONS_l2_00017233	NA	NA	NA	NA	XLOC_l2_009216	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009216), lincRNA [TCONS_l2_00017233]"	chr21:40249231-40249172	hs|21q22.2	Agilent_HUMAN_G3V2	TCONS_l2_00017233	TCONS_l2_00017233	chr21	 40249172	 40249231	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33492_PI429285431	0.88827485	A	0.9026816	A	0.990063696381887	0	lncRNA	35064-1_{1..2595}	n340231|BC040304|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2692|NULL|4.7625300|-0.2754882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340231|BC040304|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2692|NULL|4.7625300|-0.2754882	chr4	141049168	141051762	+	NA	NA	NA	NA	MAML3	NA	chr4:141039168-141070011	inner
CUST_44966_PI429285431	8.959284	P	8.798441	P	1.11794018550316	0	lncRNA	49477-1_{1..759}	"gi|374717344|ref|NR_046297.1| Homo sapiens postmeiotic segregation increased 2 pseudogene 4 (PMS2P4), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|374717344|ref|NR_046297.1| Homo sapiens postmeiotic segregation increased 2 pseudogene 4 (PMS2P4), transcript variant 1, non-coding RNA"	Chr7	 66752527	 66753285	-	5382	NR_046297.1	NA	NA	NA	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_45397_PI429285431	6.330112	P	5.9848633	P	1.27036995728337	0	lncRNA	49827-1_{1..1722}	"gi|224809400|ref|NR_027302.1| Homo sapiens xeroderma pigmentosum, complementation group A (XPA), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224809400|ref|NR_027302.1| Homo sapiens xeroderma pigmentosum, complementation group A (XPA), transcript variant 2, non-coding RNA"	Chr9	100437191	100438912	-	7507	NR_027302.1	NA	NA	NA	NA	NA	inter
CUST_21053_PI429285431	3.3379865	P	3.5136094	P	0.885385161446617	0	lncRNA	22680-1_{1..387}	lnc-AC012123.1.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC012123.1.1-1:4	chr18	 30415982	 30416368	+	lnc-AC012123.1.1-1	lnc-AC012123.1.1-1:4	ENSG00000263765.1	RP11-746B8.1	NA	NA	NA	inter
CUST_49189_PI429285431	7.136732	P	7.2742004	P	0.909113042022366	0	lncRNA	53013-1_{1..487}	hg19_lincRNAsTranscripts_TCONS_l2_00021341 range=chr4:147033086-147043066 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021341 range=chr4:147033086-147043066 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	147033086	147033572	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27996_PI429285431	0.9060606	A	0.92269194	A	0.988538225976297	0	lncRNA	29605-1_{1..763}	n325250|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328654|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328654|-0.9838520|-0.4089812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325250|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328654|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328654|-0.9838520|-0.4089812	chr2	 75000189	 75000951	-	NA	NA	NA	NA	HK2	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20chr2:74990189-75015481"	NA	inter
CUST_23539_PI429285431	8.908776	P	8.949056	P	0.9724661916802	0	lncRNA	25106-1_{1..461}	lnc-CENPV-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CENPV-2:1	chr17	 16285882	 16286342	-	lnc-CENPV-2	lnc-CENPV-2:1	ENSG00000265401.1	RP11-138I1.4	UBB	"hg19_refFlat_UBC:range=chr12:125396260-1253983175'pad=0,hg19_refFlat_UBC:range=chr12:125396260-1253983175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_UBB:range=chr17:16285222-162859115'pad=0,hg19_refFlat_UBB:range=chr17:16285222-162859115'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40chr17:16284367-16286054"	NA	inner
CUST_37650_PI429285431	3.9133646	P	4.07276	P	0.895400233763046	0	lncRNA	38742-1_{1..986}	n346127|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1677|NULL|-1.1669100|-0.3967052	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346127|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1677|NULL|-1.1669100|-0.3967052	chr13	 46530610	 46531595	+	NA	NA	NA	NA	ZC3H13	NA	chr13:46536314-46543781	inter
LNCA_21_P0003964	3.8212743	P	4.1520815	P	0.795091498904441	0	lncRNA	ENST00000500616	NA	NA	NA	NA	XLOC_004280	NA	ENST00000500616	NA	NA	"BROAD Institute lincRNA (XLOC_004280), lincRNA [TCONS_00009344]"	chr5:7373258-7373317	hs|5p15.31	Agilent_HUMAN_G3V2	ENST00000500616	ENST00000500616	chr5	  7373258	  7373317	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005363	0.8805829	A	0.8821349	A	0.998924814002883	0	lncRNA	TCONS_00013382	NA	NA	NA	NA	XLOC_006019	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006019), lincRNA [TCONS_00013382]"	chr7:26303386-26303445	hs|7p15.2	Agilent_HUMAN_G3V2	TCONS_00013382	TCONS_00013382	chr7	 26303386	 26303445	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15325_PI429285431	1.2793214	A	0.89626235	A	1.3041041115922	0	lncRNA	17004-1_{1..926}	lnc-RPS6KA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPS6KA3-1:1	chrX	 20335591	 20336516	-	lnc-RPS6KA3-1	lnc-RPS6KA3-1:1	XLOC_008127	linc-RPS6KA3-1	NA	NA	NA	inter
CUST_16273_PI429285431	3.9385772	P	4.6156893	P	0.625415942224791	0	lncRNA	17978-1_{1..3000}	lnc-BBS12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BBS12-1:1	chr4	123625559	123628558	+	lnc-BBS12-1	lnc-BBS12-1:1	XLOC_003677	linc-BBS12-1	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70"	NA	inter
CUST_171_PI429201921	1.0525231	A	0.88822645	A	1.12061961467657	0	lncRNA	144-2_{3001..4440}	TC01005238.hg.1	 TCONS_l2_00001000-XLOC_l2_000753 // Broad TUCP // linc-C1orf174-4 chr1:-:5146534-5148432 // chr1 // 100 // 100 // 0 // --- // 0///TCONS_l2_00002422-XLOC_l2_000753 // Broad TUCP // linc-C1orf174-4 chr1:-:5146518-5150959 // chr1 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:5146518-5150959	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00002422-XLOC_l2_000753	linc-C1orf174-4	chr1	  5146518	  5150959	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22208_PI429285431	0.8852326	A	0.8936727	A	0.994166847763618	0	lncRNA	23807-1_{1..771}	lnc-JMJD7-PLA2G4B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JMJD7-PLA2G4B-3:1	chr15	 42220880	 42221650	+	lnc-JMJD7-PLA2G4B-3	lnc-JMJD7-PLA2G4B-3:1	ENSG00000259883.1	CTD-2382E5.4	EHD4	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.49;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20chr15:42210880-42231081"	NA	inner
CUST_31993_PI429285431	0.8784318	A	0.88057494	A	0.998515591377432	0	lncRNA	33715-1_{1..418}	n338552|BC038764|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|956|NULL|1.0046600|-0.3801380	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338552|BC038764|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|956|NULL|1.0046600|-0.3801380	chr1	230728405	230728822	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012936	1.0696278	A	0.881866	A	1.13899530484872	0	lncRNA	TCONS_l2_00023271	NA	NA	NA	NA	XLOC_l2_012323	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012323), lincRNA [TCONS_l2_00023271]"	chr5:175604105-175604046	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_l2_00023271	TCONS_l2_00023271	chr5	175604046	175604105	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009715	0.8764619	A	0.8807676	A	0.997019965329251	0	lncRNA	TCONS_00026999	NA	NA	NA	NA	XLOC_013046	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013046), lincRNA [TCONS_00026999]"	chr19:35399572-35399631	hs|19q13.11	Agilent_HUMAN_G3V2	TCONS_00026999	TCONS_00026999	chr19	 35399572	 35399631	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004478	6.132536	P	6.2293253	P	0.935111757214663	0	lncRNA	THC2763340	NA	NA	NA	NA	XLOC_005110	NA	NA	THC2763340	NA	"BROAD Institute lincRNA (XLOC_005110), lincRNA [TCONS_00010585]"	chr5:180254027-180253968	hs|5q35.3	Agilent_HUMAN_G3V2	THC2763340	THC2763340	chr5	180253968	180254027	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27462_PI429285431	0.89992183	A	1.4776859	A	0.670001360401398	0	lncRNA	29034-1_{1..735}	n324640|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000132196|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000132196|-1.1569200|-0.4487757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324640|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000132196|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000132196|-1.1569200|-0.4487757	chr4	118455200	118455934	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008562	0.8745042	A	0.87923074	A	0.996729172972712	0	lncRNA	ENST00000554333	NA	BC036442	NA	Hs.638788	XLOC_011353	NA	ENST00000554333	NA	NA	"BROAD Institute lincRNA (XLOC_011353), lincRNA [TCONS_00023240]"	chr15:92038004-92038063	hs|15q26.1	Agilent_HUMAN_G3V2	ENST00000554333	ENST00000554333	chr15	 92038004	 92038063	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22118_PI429285431	0.8955445	A	0.887345	A	1.00569964180865	0	lncRNA	23722-1_{1..599}	lnc-HSP90AA1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSP90AA1-4:1	chr14	102305343	102305941	-	lnc-HSP90AA1-4	lnc-HSP90AA1-4:1	ENSG00000256705.3	CTD-2017C7.1	PPP2R5C	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr14:102295343-102315868"	NA	inner
CUST_41537_PI429285431	11.464093	P	10.9235	P	1.454570275614	0	lncRNA	42805-1_{1..75}	ENST00000582432 ncrna:miRNA chromosome:GRCh37:9:35811473:35811547:-1 gene:ENSG00000263448 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582432 ncrna:miRNA chromosome:GRCh37:9:35811473:35811547:-1 gene:ENSG00000263448 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 35811473	 35811547	-	ENSG00000263448	ENST00000582432	NA	NA	NPR2	NA	chr9:35801473-35809728	inner
CUST_41335_PI429285431	1.9276049	A	0.9156153	A	2.01669037195904	0	lncRNA	42396-1_{1..87}	ENST00000362260 ncrna:miRNA chromosome:GRCh37:16:14403142:14403228:1 gene:ENSG00000199130 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362260 ncrna:miRNA chromosome:GRCh37:16:14403142:14403228:1 gene:ENSG00000199130 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 14403142	 14403228	+	ENSG00000199130	ENST00000362260	NA	NA	NA	NA	NA	inter
CUST_19930_PI429285431	0.92484224	A	0.9225361	A	1.00159977271223	0	lncRNA	21585-1_{1..81}	lnc-KIF20B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIF20B-3:1	chr10	 91352504	 91352584	+	lnc-KIF20B-3	lnc-KIF20B-3:1	ENSG00000235344.1	hsa-mir-107	PANK1	NA	chr10:91342504-91362584	inner
CUST_51959_PI429285431	0.8961968	A	1.4009844	A	0.704764128452538	0	lncRNA	55502-1_{1..424}	hg19_lincRNAsTranscripts_TCONS_l2_00016228 range=chr20:26047216-26063592 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016228 range=chr20:26047216-26063592 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 26047216	 26047639	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007195	0.90343434	A	0.9281971	A	0.982982229052236	0	lncRNA	TCONS_00019278	NA	NA	NA	NA	XLOC_009111	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009111), lincRNA [TCONS_00019278]"	chr11:38708156-38708215	hs|11p12	Agilent_HUMAN_G3V2	TCONS_00019278	TCONS_00019278	chr11	 38708156	 38708215	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5772_PI429285431	2.5188935	A	2.9190989	A	0.757750392809639	0	lncRNA	5695-2_{3001..4582}	"transcript_id ""ENST00000591705.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591705.1"" | genecode_v17"	chr17	 20451684	 20453265	+	ENSG00000267075.1	ENST00000591705.1	RP11-434D2.3	RP11-434D2.3-001	CDRT15L2	"hg19_refFlat_TBC1D3:range=chr17:36285545-362946005'pad=0,hg19_refFlat_TBC1D3:range=chr17:36285545-362946005'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_TBC1D3C:range=chr17:34581400-345904545'pad=0,hg19_refFlat_TBC1D3C:range=chr17:34581400-345904545'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10;hg19_refFlat_TBC1D3B:range=chr17:34493375-345024105'pad=0,hg19_refFlat_TBC1D3B:range=chr17:34493375-345024105'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10;hg19_refFlat_TBC1D3:range=chr17:36338026-363470815'pad=0,hg19_refFlat_TBC1D3:range=chr17:36338026-363470815'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10;hg19_refFlat_USP6:range=chr17:5033663-50762735'pad=0,hg19_refFlat_USP6:range=chr17:5033663-50762735'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30;hg19_refFlat_TBC1D3F:range=chr17:36285545-362946005'pad=0,hg19_refFlat_TBC1D3F:range=chr17:36285545-362946005'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_TBC1D3H:range=chr17:34746434-347554655'pad=0,hg19_refFlat_TBC1D3H:range=chr17:34746434-347554655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_TBC1D3G:range=chr17:34797486-348065185'pad=0,hg19_refFlat_TBC1D3G:range=chr17:34797486-348065185'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10;hg19_refFlat_TBC1D3F:range=chr17:36338026-363470815'pad=0,hg19_refFlat_TBC1D3F:range=chr17:36338026-363470815'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10chr17:20438684-20463265"	NA	inter
CUST_39318_PI429285431	1.402911	A	0.9013634	A	1.41573142384644	0	lncRNA	40285-1_{1..1571}	n386355|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010idt.1||-1.1548100|-0.3479806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n386355|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010idt.1||-1.1548100|-0.3479806	chr4	 14113613	 14115183	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6964_PI429285431	3.5236902	P	2.805349	A	1.64528920530369	0	lncRNA	6912-1_{1..274}	"transcript_id ""ENST00000449126.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449126.1"" | genecode_v17"	chr22	 27672201	 27672474	+	ENSG00000233574.1	ENST00000449126.1	CTA-929C8.5	CTA-929C8.5-001	NA	NA	NA	inter
LNCA_21_P0004768	0.905301	A	0.92858005	A	0.983993676891685	0	lncRNA	ENST00000423489	NA	NA	NA	NA	XLOC_005796	NA	ENST00000423489	NA	NA	"BROAD Institute lincRNA (XLOC_005796), lincRNA [TCONS_00011530]"	chr6:106060604-106060545	hs|6q21	Agilent_HUMAN_G3V2	ENST00000423489	ENST00000423489	chr6	106060545	106060604	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11883_PI429285431	2.670692	A	2.6773772	A	0.995376892083309	0	lncRNA	13465-1_{1..478}	lnc-HTR4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HTR4-1:1	chr5	147763062	147763539	-	lnc-HTR4-1	lnc-HTR4-1:1	XLOC_005049	linc-C5orf46-1	FBXO38	NA	chr5:147763546-147773363	inter
CUST_46313_PI429285431	14.223007	P	13.383466	P	1.78948071983497	0	lncRNA	50544-1_{1..1973}	"gi|294345472|ref|NR_003225.2| Homo sapiens lectin, galactoside-binding, soluble, 3 (LGALS3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|294345472|ref|NR_003225.2| Homo sapiens lectin, galactoside-binding, soluble, 3 (LGALS3), transcript variant 2, non-coding RNA"	Chr14	 55603701	 55605673	+	3958	NR_003225.2	NA	NA	NA	NA	NA	inter
CUST_47053_PI429285431	1.0718718	A	0.92515504	A	1.10704721987996	0	lncRNA	51141-1_{1..3000}	"gi|322303763|ref|NR_037802.1| Homo sapiens ZNF625-ZNF20 readthrough (ZNF625-ZNF20), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|322303763|ref|NR_037802.1| Homo sapiens ZNF625-ZNF20 readthrough (ZNF625-ZNF20), non-coding RNA"	Chr19	 12242165	 12245164	-	100529855	NR_037802.1	NA	NA	NA	NA	NA	inter
CUST_40131_PI429285431	1.4046402	A	1.2814885	A	1.08911152985811	0	lncRNA	40971-1_{1..1191}	n407707|NR_027176|lncRNA|Homosapiens||RefGeneNoncode|NR_027176||1.0955400|-0.1836533	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n407707|NR_027176|lncRNA|Homosapiens||RefGeneNoncode|NR_027176||1.0955400|-0.1836533	chr17	 16342300	 16343490	+	NA	NA	NA	NA	C17orf76	NA	chr17:16345328-16383962	inner
CUST_20954_PI429285431	5.1465073	P	5.3518453	P	0.867335460745001	0	lncRNA	22585-1_{1..544}	lnc-SMUG1-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMUG1-6:2	chr12	 54378494	 54379037	-	lnc-SMUG1-6	lnc-SMUG1-6:2	ENSG00000251151.2	HOXC-AS3	HOXC10	NA	chr12:54378946-54384063	inter
LNCA_21_P0001523	0.90066653	A	0.91907936	A	0.987318297962478	0	lncRNA	TCONS_00001536	NA	NA	NA	NA	XLOC_000885	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000885), lincRNA [TCONS_00001536]"	chr1:83001926-83001867	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_00001536	TCONS_00001536	chr1	 83001867	 83001926	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12898_PI429285431	1.2986436	A	1.5512915	A	0.839354462545669	0	lncRNA	14527-1_{1..2592}	lnc-ASPH-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASPH-2:2	chr8	 62732012	 62734603	-	lnc-ASPH-2	lnc-ASPH-2:2	XLOC_007099	linc-ASPH-2	NA	NA	NA	inter
CUST_31262_PI429285431	5.028447	P	5.345845	P	0.80251596602681	0	lncRNA	33052-1_{1..474}	n337718|AF074994|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|100|NULL|-1.0764100|-0.3247062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337718|AF074994|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|100|NULL|-1.0764100|-0.3247062	chr15	 41866358	 41866831	-	NA	NA	NA	NA	TYRO3	NA	chr15:41856358-41871536	inner
CUST_19498_PI429285431	1.4104319	A	2.8947566	A	0.357415795790842	0	lncRNA	21154-1_{1..515}	lnc-UTS2D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UTS2D-1:1	chr3	190952361	190952875	-	lnc-UTS2D-1	lnc-UTS2D-1:1	ENSG00000233308.1	OSTN-AS1	OSTN	"hg19_refFlat_OSTN:range=chr3:190930322-1909679105'pad=0,hg19_refFlat_OSTN:range=chr3:190930322-1909679105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr3:190942361-190962394"	NA	inner
LNCA_21_P0012554	0.893745	A	0.9088709	A	0.989570295588408	0	lncRNA	ENST00000488173	NA	NA	NA	NA	XLOC_l2_010415	NA	ENST00000488173	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010415), lincRNA [TCONS_l2_00020247]"	chr3:162937910-162936928	hs|3q26.1	Agilent_HUMAN_G3V2	ENST00000488173	ENST00000488173	chr3	162936928	162937910	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007588	0.8913276	A	0.9057325	A	0.990064965963442	0	lncRNA	TCONS_00020481	NA	NA	NA	NA	XLOC_009812	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009812), lincRNA [TCONS_00020481]"	chr12:77513941-77514000	hs|12q21.2	Agilent_HUMAN_G3V2	TCONS_00020481	TCONS_00020481	chr12	 77513941	 77514000	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50864_PI429285431	3.278862	P	3.2281177	P	1.03579916459328	0	lncRNA	54508-1_{1..1448}	hg19_lincRNAsTranscripts_TCONS_l2_00005192 range=chr11:111267465-111269448 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005192 range=chr11:111267465-111269448 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	111267465	111268912	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-23.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40"	NA	inter
LNCA_21_P0006300	2.5020146	A	1.4930416	A	2.01247798317025	0	lncRNA	TCONS_00016437	NA	NA	NA	NA	XLOC_007805	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007805), lincRNA [TCONS_00016437]"	chr9:102153980-102153921	hs|9q22.33	Agilent_HUMAN_G3V2	TCONS_00016437	TCONS_00016437	chr9	102153921	102153980	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48194_PI429285431	2.6882484	A	2.1976192	A	1.4050575273497	0	lncRNA	52057-1_{1..2107}	"gi|325197168|ref|NR_037925.1| Homo sapiens FSHD region gene 2 family, member C pseudogene (FLJ20518), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|325197168|ref|NR_037925.1| Homo sapiens FSHD region gene 2 family, member C pseudogene (FLJ20518), non-coding RNA"	NA	NA	NA	NA	NA	NR_037925.1	NA	NA	NA	NA	NA	Unknown
CUST_50633_PI429285431	0.89030594	A	0.893257	A	0.997956571729431	0	lncRNA	54316-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00003437 range=chr10:27220142-27232562 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003437 range=chr10:27220142-27232562 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 27223142	 27226141	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_17897_PI429285431	7.7523785	P	8.042824	P	0.817649531791188	0	lncRNA	19630-1_{1..360}	lnc-MAPK8IP2-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAPK8IP2-1:14	chr22	 51038639	 51038998	+	lnc-MAPK8IP2-1	lnc-MAPK8IP2-1:14	XLOC_014288	linc-MAPK8IP2	MAPK8IP2	NA	chr22:51039131-51048732	inter
CUST_34110_PI429285431	4.3294525	P	4.6220593	P	0.816425528911827	0	lncRNA	35633-1_{1..597}	n340940|BC017277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3405|NULL|-1.1429500|-0.0165229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340940|BC017277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3405|NULL|-1.1429500|-0.0165229	chr11	  2160014	  2160610	+	NA	NA	NA	NA	IGF2	NA	chr11:2150347-2170609	inner
LNCA_19_P00806771	0.8808185	A	0.8888412	A	0.994454521364122	0	lncRNA	XR_132670	XR_132670	XR_132670	NA	NA	LOC100652730	uncharacterized LOC100652730	ENST00000412500	THC2635964	NA	"PREDICTED: Homo sapiens hypothetical LOC100652730 (LOC100652730), miscRNA [XR_132670]"	chr20:61405554-61405495	hs|20q13.33	Agilent_HUMAN_G3V2	XR_132670	XR_132670	chr20	 61405495	 61405554	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17953_PI429285431	0.89557976	A	0.90465504	A	0.99372923905899	0	lncRNA	19684-1_{1..454}	lnc-PRPF18-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRPF18-6:1	chr10	 13464735	 13465188	+	lnc-PRPF18-6	lnc-PRPF18-6:1	XLOC_008395	linc-PRPF18-2	NA	NA	NA	inter
CUST_47642_PI429285431	6.799355	P	5.1983805	P	3.03348147272221	0	lncRNA	51629-2_{3001..6000}	"gi|324711010|ref|NR_037916.1| Homo sapiens X-linked inhibitor of apoptosis (XIAP), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|324711010|ref|NR_037916.1| Homo sapiens X-linked inhibitor of apoptosis (XIAP), transcript variant 3, non-coding RNA"	ChrX	122997017	123000016	+	331	NR_037916.1	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	inter
CUST_38603_PI429285431	12.381257	P	12.567232	P	0.879054793638599	0	lncRNA	39610-1_{1..3000}	n383704|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tft.1||5.5524200|-0.2033592	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n383704|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tft.1||5.5524200|-0.2033592	chr2	111143987	111146986	-	NA	NA	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20"	NA	inter
CUST_29749_PI429285431	7.5308795	P	7.794942	P	0.8327396944009	0	lncRNA	31511-1_{1..326}	n333431|BC015348|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000088632|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000088632|1.5305700|-0.0534326	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333431|BC015348|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000088632|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000088632|1.5305700|-0.0534326	chr3	196042964	196043289	-	NA	NA	NA	NA	TM4SF19	NA	chr3:196050417-196055101	inter
CUST_28278_PI429285431	3.4388878	P	3.194632	P	1.18448161017463	0	lncRNA	29913-1_{1..804}	n325572|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000130000|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000130000|-0.1561370|-0.2016901	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325572|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000130000|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000130000|-0.1561370|-0.2016901	chr17	 14218180	 14218983	+	NA	NA	NA	NA	HS3ST3B1	NA	chr17:14208180-14249492	inner
CUST_5587_PI429285431	1.0119941	A	0.8980598	A	1.08217536138675	0	lncRNA	5516-1_{1..1243}	"transcript_id ""ENST00000564041.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564041.1"" | genecode_v17"	chr16	 65318927	 65320169	-	ENSG00000261742.1	ENST00000564041.1	RP11-256I9.1	RP11-256I9.1-003	NA	NA	NA	inter
CUST_31728_PI429285431	1.4675621	A	1.0835882	A	1.30493133977801	0	lncRNA	33469-1_{1..2239}	n338261|AK025573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|654|NULL|0.8717860|-0.1963177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338261|AK025573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|654|NULL|0.8717860|-0.1963177	chr19	  1372236	  1374474	-	NA	NA	NA	NA	MUM1	"hg19_refFlat_MUM1:range=chr19:1356389-13765755'pad=0,hg19_refFlat_MUM1:range=chr19:1356389-13765755'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20chr19:1362236-1378430"	NA	inter
CUST_28226_PI429285431	0.8869666	A	0.885649	A	1.00091370790207	0	lncRNA	29860-1_{1..289}	n325515|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280516|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280516|-1.0943500|-0.4477390	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325515|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280516|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280516|-1.0943500|-0.4477390	chr19	 44867723	 44868011	+	NA	NA	NA	NA	ZFP112	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90chr19:44857723-44860856"	NA	inter
CUST_8678_PI429285431	10.124209	P	10.245229	P	0.919537298569581	0	lncRNA	10226-1_{1..453}	lnc-BTBD10-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BTBD10-3:3	chr11	 13011003	 13011455	-	lnc-BTBD10-3	lnc-BTBD10-3:3	ENSG00000251381	CTC-497E21.4	NA	NA	NA	inter
CUST_37464_PI429285431	10.411847	P	9.309636	P	2.14683453308345	0	lncRNA	38563-1_{1..351}	n345917|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1466|NULL|-1.3364300|-0.2937601	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345917|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1466|NULL|-1.3364300|-0.2937601	chr9	135895126	135895476	-	NA	NA	NA	NA	GTF3C5	"hg19_refFlat_EEF1A1:range=chr6:74227533-742297495'pad=0,hg19_refFlat_EEF1A1:range=chr6:74227533-742297495'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70chr9:135906062-135906294"	NA	inter
LNCA_21_P0005832	1.4008433	A	0.87884456	A	1.43594325651966	0	lncRNA	TCONS_00015007	NA	NA	NA	NA	XLOC_007084	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007084), lincRNA [TCONS_00015007]"	chr8:54406469-54406410	hs|8q11.23	Agilent_HUMAN_G3V2	TCONS_00015007	TCONS_00015007	chr8	 54406410	 54406469	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10928_PI429285431	1.0761324	A	0.9014185	A	1.12874054274067	0	lncRNA	12469-1_{1..2312}	lnc-PCYOX1L-2:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCYOX1L-2:13	chr5	148804660	148806971	+	lnc-PCYOX1L-2	lnc-PCYOX1L-2:13	XLOC_004598	linc-ARHGEF37-2	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50"	NA	inter
CUST_32339_PI429285431	0.9232306	A	0.8914351	A	1.02228361306989	0	lncRNA	34021-1_{1..2611}	n338919|BC040181|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1345|NULL|-0.9001960|-0.2230122	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338919|BC040181|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1345|NULL|-0.9001960|-0.2230122	chr2	100721384	100723994	+	NA	NA	NA	NA	AFF3	NA	chr2:100711384-100733966	inner
CUST_16423_PI429285431	10.833165	P	11.710656	P	0.544313227154332	0	lncRNA	18122-1_{1..1032}	lnc-F3-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-F3-2:3	chr1	 95086187	 95087218	-	lnc-F3-2	lnc-F3-2:3	XLOC_000922	linc-F3-4	NA	NA	NA	inter
LNCA_21_P0012357	7.742469	P	7.2472563	P	1.40952855000827	0	lncRNA	ENST00000444114	NA	NA	NA	NA	XLOC_l2_009510	NA	ENST00000444114	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009510), lincRNA [TCONS_l2_00018380]"	chr22:27617369-27617310	hs|22q12.1	Agilent_HUMAN_G3V2	ENST00000444114	ENST00000444114	chr22	 27617310	 27617369	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008186	0.87816215	A	0.8791353	A	0.999325691269623	0	lncRNA	TCONS_00022061	NA	NA	NA	NA	XLOC_010666	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010666), lincRNA [TCONS_00022061]"	chr13:79996581-79996522	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00022061	TCONS_00022061	chr13	 79996522	 79996581	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45244_PI429285431	1.07829	A	1.0998801	A	0.985146303918359	0	lncRNA	49698-1_{1..3000}	"gi|363498931|ref|NR_045639.1| Homo sapiens ubiquinol-cytochrome c reductase binding protein (UQCRB), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|363498931|ref|NR_045639.1| Homo sapiens ubiquinol-cytochrome c reductase binding protein (UQCRB), transcript variant 4, non-coding RNA"	Chr8	 97238904	 97241903	-	7381	NR_045639.1	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-25.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10"	NA	inter
CUST_32890_PI429285431	7.0292387	P	5.9388227	P	2.12935427405152	0	lncRNA	34517-1_{1..2751}	n339557|BC041916|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1999|NULL|-0.9711860|-0.2910999	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339557|BC041916|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1999|NULL|-0.9711860|-0.2910999	chr20	  3229951	  3232701	-	NA	NA	NA	NA	C20orf194	NA	chr20:3229948-3242685	inner
CUST_11921_PI429285431	0.89408606	A	0.89357036	A	1.00035751989602	0	lncRNA	13502-1_{1..685}	lnc-RP1L1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP1L1-4:2	chr8	  9909270	  9909954	-	lnc-RP1L1-4	lnc-RP1L1-4:2	XLOC_007003	linc-PPP1R3B-2	MSRA	NA	chr8:9911830-9919473	inter
LNCA_21_P0004808	0.8792821	A	0.88035834	A	0.999254285461786	0	lncRNA	ENST00000457833	NA	NA	NA	NA	XLOC_005937	NA	ENST00000457833	NA	NA	"BROAD Institute lincRNA (XLOC_005937), lincRNA [TCONS_00011624]"	chr6:169686758-169686699	hs|6q27	Agilent_HUMAN_G3V2	ENST00000457833	ENST00000457833	chr6	169686699	169686758	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32844_PI429285431	0.8779788	A	0.88082623	A	0.998028258365203	0	lncRNA	34478-1_{1..259}	n339502|U17639|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1942|NULL|-1.0347200|-0.3255855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339502|U17639|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1942|NULL|-1.0347200|-0.3255855	chr21	 39022653	 39022911	-	NA	NA	NA	NA	KCNJ6	NA	chr21:39012653-39032912	inner
CUST_46443_PI429285431	1.5667573	A	1.3090901	A	1.19554397761891	0	lncRNA	50651-1_{1..1718}	"gi|224809548|ref|NR_027320.1| Homo sapiens casein kinase 1, alpha 1 pseudogene 1 (CSNK1A1P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224809548|ref|NR_027320.1| Homo sapiens casein kinase 1, alpha 1 pseudogene 1 (CSNK1A1P1), non-coding RNA"	Chr15	 37091301	 37093018	-	161635	NR_027320.1	NA	NA	NA	NA	NA	inter
CUST_34627_PI429285431	11.088984	P	11.342978	P	0.838571671955219	0	lncRNA	36080-1_{1..2356}	n341519|AK056594|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3989|NULL|-1.0595500|-0.2639582	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341519|AK056594|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3989|NULL|-1.0595500|-0.2639582	chr8	 67082535	 67084890	+	NA	NA	NA	NA	TRIM55	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.70chr8:67072535-67087720"	NA	inner
CUST_20090_PI429285431	0.8999643	A	1.5210447	A	0.650183838147797	0	lncRNA	21738-1_{1..599}	lnc-SUSD1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SUSD1-1:3	chr9	114798931	114799529	-	lnc-SUSD1-1	lnc-SUSD1-1:3	ENSG00000259953.1	RP11-4O1.2	SUSD1	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50chr9:114803061-114809395"	NA	inter
CUST_19394_PI429285431	1.161382	A	0.893628	A	1.20393207620565	0	lncRNA	21056-1_{1..448}	lnc-HSP90AA1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSP90AA1-5:1	chr14	102276554	102277001	-	lnc-HSP90AA1-5	lnc-HSP90AA1-5:1	ENSG00000259088.1	CTD-2017C7.2	PPP2R5C	NA	chr14:102266554-102286658	inner
CUST_20693_PI429285431	2.4543078	A	2.7138789	A	0.835336220312462	0	lncRNA	22329-1_{1..491}	lnc-GSTM3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GSTM3-1:1	chr1	110236224	110236714	-	lnc-GSTM3-1	lnc-GSTM3-1:1	ENSG00000260246.1	AC000032.2	GSTM1	"hg19_refFlat_GSTM4:range=chr1:110199012-1102038765'pad=0,hg19_refFlat_GSTM4:range=chr1:110199012-1102038765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_GSTM1:range=chr1:110230496-1102359175'pad=0,hg19_refFlat_GSTM1:range=chr1:110230496-1102359175'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_GSTM2:range=chr1:110210738-1102174585'pad=0,hg19_refFlat_GSTM2:range=chr1:110210738-1102174585'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10chr1:110230418-110236367"	NA	inner
CUST_48094_PI429285431	0.8841648	A	0.88108903	A	1.00213423554896	0	lncRNA	51970-1_{1..3000}	"gi|310115142|ref|XR_112948.1| PREDICTED: Homo sapiens uncharacterized LOC441179 (LOC441179), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310115142|ref|XR_112948.1| PREDICTED: Homo sapiens uncharacterized LOC441179 (LOC441179), misc_RNA"	NA	NA	NA	NA	NA	XR_112948.1	NA	NA	NA	"hg19_refFlat_ZNF649:range=chr19:52393871-524033605'pad=0,hg19_refFlat_ZNF649:range=chr19:52393871-524033605'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80"	NA	Unknown
CUST_38898_PI429285431	0.88847923	A	1.771657	A	0.542171893464857	0	lncRNA	39885-1_{1..1306}	n384868|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003obn.1||4.1007400|-0.1235755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384868|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003obn.1||4.1007400|-0.1235755	chr6	 32520489	 32521794	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009396	7.3890204	P	7.5091214	P	0.920123232506752	0	lncRNA	TCONS_00025982	NA	NA	NA	NA	XLOC_012315	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012315), lincRNA [TCONS_00025982]"	chr17:75254724-75254783	hs|17q25.2	Agilent_HUMAN_G3V2	TCONS_00025982	TCONS_00025982	chr17	 75254724	 75254783	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35095_PI429285431	7.57186	P	7.7737503	P	0.869410666038545	0	lncRNA	36502-1_{1..874}	n342061|BC039530|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4542|NULL|-1.2130000|-0.3714381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342061|BC039530|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4542|NULL|-1.2130000|-0.3714381	chr12	127808699	127809572	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007467	6.112178	P	5.7688656	P	1.26866608549748	0	lncRNA	TCONS_00019744	NA	NA	NA	NA	XLOC_009537	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009537), lincRNA [TCONS_00019744]"	chr11:103714445-103713691	hs|11q22.3	Agilent_HUMAN_G3V2	TCONS_00019744	TCONS_00019744	chr11	103713691	103714445	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50583_PI429285431	0.91708755	A	0.9148901	A	1.00152431686362	0	lncRNA	54276-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00002975 range=chr10:37592575-37636288 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002975 range=chr10:37592575-37636288 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 37592575	 37595574	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11286_PI429285431	0.9019566	A	0.8985879	A	1.00233773315419	0	lncRNA	12846-1_{1..2443}	lnc-FAR2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAR2-2:1	chr12	 28732785	 28735227	+	lnc-FAR2-2	lnc-FAR2-2:1	XLOC_009695	linc-FAR2-2	NA	NA	NA	inter
CUST_39532_PI429285431	3.9727259	P	4.120877	P	0.902406209414546	0	lncRNA	40478-1_{1..3000}	n387397|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011dla.1||3.0101700|-0.1971915	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387397|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011dla.1||3.0101700|-0.1971915	chr6	 28183115	 28186114	-	NA	NA	NA	NA	ZNF193	NA	chr6:28193029-28196707	inter
CUST_10688_PI429285431	1.0047765	A	0.89448434	A	1.07944681301659	0	lncRNA	12222-1_{1..287}	lnc-C3orf32-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C3orf32-4:1	chr3	  7925641	  7925927	-	lnc-C3orf32-4	lnc-C3orf32-4:1	XLOC_003031	linc-SUMF1-9	NA	NA	NA	inter
CUST_27116_PI429285431	0.9030976	A	0.92021763	A	0.988203431080712	0	lncRNA	28649-1_{1..566}	n324229|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326428|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326428|-1.0737000|-0.3141782	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324229|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326428|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326428|-1.0737000|-0.3141782	chr7	 19359681	 19360246	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34157_PI429285431	3.1775048	A	3.756052	P	0.669637766040291	0	lncRNA	35675-1_{1..225}	n341000|AJ011598|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3466|NULL|-1.0922700|-0.3619059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341000|AJ011598|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3466|NULL|-1.0922700|-0.3619059	chr11	 28373636	 28373860	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27016_PI429285431	1.465776	A	1.6533523	A	0.878079639846658	0	lncRNA	28546-1_{1..357}	n324121|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052397|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052397|-1.1362800|-0.1886796	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324121|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052397|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052397|-1.1362800|-0.1886796	chr9	 35920008	 35920364	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44862_PI429285431	4.5979843	P	4.299779	P	1.2296138326853	0	lncRNA	49387-2_{3001..3873}	"gi|224967135|ref|NR_021487.2| Homo sapiens uncharacterized LOC114796 (KIAA1908), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224967135|ref|NR_021487.2| Homo sapiens uncharacterized LOC114796 (KIAA1908), transcript variant 3, non-coding RNA"	Chr7	  1612709	  1613581	+	114796	NR_021487.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0010587	0.9021415	A	0.9216764	A	0.986550700163807	0	lncRNA	TCONS_l2_00000927	NA	NA	NA	NA	XLOC_l2_000697	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000697), lincRNA [TCONS_l2_00000927]"	chr1:241823945-241827485	hs|1q43	Agilent_HUMAN_G3V2	TCONS_l2_00000927	TCONS_l2_00000927	chr1	241823945	241827485	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4001_PI429285431	7.0290017	P	6.874472	P	1.113058716277	0	lncRNA	3962-1_{1..2424}	"transcript_id ""ENST00000562341.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562341.1"" | genecode_v17"	chr11	 69229075	 69231498	+	ENSG00000259854.1	ENST00000562341.1	RP11-211G23.1	RP11-211G23.1-001	NA	NA	NA	inter
CUST_29743_PI429285431	0.9212941	A	0.9502021	A	0.980161917824197	0	lncRNA	31505-1_{1..654}	n333418|BC011252|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087616|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087616|-1.2129700|-0.3609109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333418|BC011252|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087616|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087616|-1.2129700|-0.3609109	chr21	 34444087	 34444740	+	NA	NA	NA	NA	OLIG1	NA	chr21:34442450-34444728	inner
CUST_7421_PI429285431	11.55353	P	11.779062	P	0.855279579502416	0	lncRNA	9064-1_{1..400}	lnc-TTLL7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TTLL7-2:1	chr1	 84326653	 84327052	-	lnc-TTLL7-2	lnc-TTLL7-2:1	ENSG00000233008	RP11-475O6.1	TTLL7	NA	chr1:84335057-84336706	inter
CUST_43757_PI429285431	2.9582	A	1.8731909	A	2.12138886365009	0	lncRNA	48495-1_{1..1459}	"gi|300360578|ref|NR_034040.1| Homo sapiens LGALS8 antisense RNA 1 (LGALS8-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300360578|ref|NR_034040.1| Homo sapiens LGALS8 antisense RNA 1 (LGALS8-AS1), non-coding RNA"	Chr1	236686369	236687827	-	100287902	NR_034040.1	NA	NA	NA	NA	NA	inter
CUST_7241_PI429285431	0.8932171	A	0.9086722	A	0.989344517189275	0	lncRNA	7868-1_{1..292}	"transcript_id ""ENST00000410222.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410222.1"" | genecode_v17"	chr7	 53557841	 53558132	-	ENSG00000222154.1	ENST00000410222.1	RN7SKP218	RN7SKP218-201	NA	NA	NA	inter
CUST_40564_PI429285431	4.9108524	P	4.260733	P	1.56929806831025	0	lncRNA	41321-1_{1..3000}	n409762|NR_034165|lncRNA|Homosapiens||RefGeneNoncode|NR_034165||9.2649000|-0.2137595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409762|NR_034165|lncRNA|Homosapiens||RefGeneNoncode|NR_034165||9.2649000|-0.2137595	chr14	 69658482	 69661481	+	NA	NA	NA	NA	EXD2	NA	chr14:69658194-69710737	inter
CUST_46928_PI429285431	9.786875	P	9.527588	P	1.19688704016702	0	lncRNA	51039-1_{1..3000}	"gi|258547106|ref|NR_028439.1| Homo sapiens small integral membrane protein 5 (SMIM5), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|258547106|ref|NR_028439.1| Homo sapiens small integral membrane protein 5 (SMIM5), transcript variant 2, non-coding RNA"	Chr17	 73632675	 73635674	+	643008	NR_028439.1	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40"	NA	inter
CUST_20612_PI429285431	0.9082017	A	0.9193146	A	0.992326715813482	0	lncRNA	22251-1_{1..446}	lnc-ZWINT-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZWINT-4:1	chr10	 57356873	 57357318	-	lnc-ZWINT-4	lnc-ZWINT-4:1	ENSG00000236744.1	RP11-168O22.1	MTRNR2L5	NA	chr10:57358750-57360488	inter
CUST_48182_PI429285431	5.3777943	P	4.9179544	P	1.37538917879474	0	lncRNA	52046-1_{1..1412}	"gi|310113961|ref|XR_112205.1| PREDICTED: Homo sapiens uncharacterized LOC100505727 (LOC100505727), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|310113961|ref|XR_112205.1| PREDICTED: Homo sapiens uncharacterized LOC100505727 (LOC100505727), misc_RNA"	NA	NA	NA	NA	NA	XR_112205.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004726	0.88245124	A	0.89175963	A	0.99356868571781	0	lncRNA	ENST00000431369	XR_108670	XR_108670	NA	Hs.42339	XLOC_005600	NA	ENST00000431369	THC2676253	NA	"PREDICTED: Homo sapiens hypothetical LOC100506288 (LOC100506288), miscRNA [XR_108670]"	chr6:9124647-9124588	hs|6p24.3	Agilent_HUMAN_G3V2	ENST00000431369	ENST00000431369	chr6	  9124588	  9124647	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006102	0.88093156	A	2.2606966	A	0.384281375006033	0	lncRNA	ENST00000440009	NA	NA	NA	NA	XLOC_007830	NA	ENST00000440009	NA	NA	"BROAD Institute lincRNA (XLOC_007830), lincRNA [TCONS_00015870]"	chr9:115511518-115511459	hs|9q32	Agilent_HUMAN_G3V2	ENST00000440009	ENST00000440009	chr9	115511459	115511518	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002561	1.4785563	A	2.2411964	A	0.589416723626241	0	lncRNA	TCONS_00004655	NA	NA	NA	NA	XLOC_001306	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001306), lincRNA [TCONS_00004655]"	chr2:496169-496228	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00004655	TCONS_00004655	chr2	   496169	   496228	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26220_PI429285431	3.6829119	P	2.356518	A	2.50775064026741	0	lncRNA	27727-3_{6001..6719}	lnc-GJA10-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GJA10-3:6	chr6	 90589525	 90590243	+	lnc-GJA10-3	lnc-GJA10-3:6	ENSG00000118412.8	CASP8AP2	CASP8AP2	NA	chr6:90573525-90584155	inner
LNCA_21_P0011906	2.9397042	P	3.7687035	P	0.562919566198592	0	lncRNA	ENST00000449391	NA	NA	NA	NA	XLOC_l2_007928	NA	ENST00000449391	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007928), lincRNA [TCONS_l2_00014465]"	chr2:20792252-20792193	hs|2p24.1	Agilent_HUMAN_G3V2	ENST00000449391	ENST00000449391	chr2	 20792193	 20792252	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22966_PI429285431	1.4307379	A	1.4478818	A	0.988187080971998	0	lncRNA	24540-1_{1..577}	lnc-AKR1D1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AKR1D1-2:1	chr7	137642464	137643040	+	lnc-AKR1D1-2	lnc-AKR1D1-2:1	ENSG00000237243.1	AC022173.2	CREB3L2	NA	chr7:137632464-137652712	inner
CUST_27950_PI429285431	5.394506	P	5.751737	P	0.780661485425716	0	lncRNA	29554-1_{1..424}	n325198|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329797|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329797|-0.9224850|-0.3421486	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325198|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329797|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329797|-0.9224850|-0.3421486	chr2	105941971	105942394	-	NA	NA	NA	NA	TGFBRAP1	NA	chr2:105931971-105946148	inner
CUST_30056_PI429285431	4.4972463	P	5.0408974	P	0.68603253369233	0	lncRNA	31825-1_{1..283}	n334563|U59748|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220598|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220598|2.3739800|-0.2165092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334563|U59748|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220598|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220598|2.3739800|-0.2165092	chr12	 49484941	 49485223	-	NA	NA	NA	NA	LMBR1L	NA	chr12:49490922-49498045	inner
CUST_21765_PI429285431	2.2192354	A	1.2565911	A	1.9488787017211	0	lncRNA	23375-1_{1..570}	lnc-TUSC5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUSC5-2:1	chr17	  1329533	  1330102	+	lnc-TUSC5-2	lnc-TUSC5-2:1	ENSG00000262777.1	RP11-818O24.3	CRK	NA	chr17:1325440-1339657	inner
CUST_33063_PI429285431	12.058724	P	11.919654	P	1.10119502711774	0	lncRNA	34673-1_{1..3000}	n339751|AK126698|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2197|NULL|-0.3294560|-0.2728142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339751|AK126698|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2197|NULL|-0.3294560|-0.2728142	chr3	195442310	195445309	+	NA	NA	NA	NA	MUC20	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.12;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40chr3:195447753-195456106"	NA	inter
LNCA_21_P0001157	0.8771149	A	0.87844414	A	0.99907906536255	0	lncRNA	ENST00000438093	NA	NA	NA	NA	XLOC_000928	NA	ENST00000438093	THC2705620	NA	"BROAD Institute lincRNA (XLOC_000928), lincRNA [TCONS_00000584]"	chr1:95817026-95816967	hs|1p21.3	Agilent_HUMAN_G3V2	ENST00000438093	ENST00000438093	chr1	 95816967	 95817026	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002557	3.921575	P	4.4235992	P	0.7061153575998	0	lncRNA	TCONS_00004629	NA	NA	NA	NA	XLOC_002543	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002543), lincRNA [TCONS_00004629]"	chr2:241321493-241321434	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_00004629	TCONS_00004629	chr2	241321434	241321493	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11119_PI429285431	0.8974113	A	0.903324	A	0.995910015527897	0	lncRNA	12677-1_{1..3000}	lnc-ERP44-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERP44-3:3	chr9	102582103	102585102	-	lnc-ERP44-3	lnc-ERP44-3:3	XLOC_007808	linc-ALG2-5	NR4A3	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60chr9:102584137-102592163"	NA	inter
CUST_11983_PI429285431	0.8909048	A	0.90368176	A	0.991182787829693	0	lncRNA	13563-1_{1..340}	lnc-C12orf12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C12orf12-2:1	chr12	 91200511	 91200850	-	lnc-C12orf12-2	lnc-C12orf12-2:1	XLOC_010149	linc-ATP2B1-1	NA	NA	NA	inter
CUST_34059_PI429285431	0.90886194	A	0.8960668	A	1.00890836057069	0	lncRNA	35589-1_{1..872}	n340879|BC038218|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3344|NULL|4.5027600|-0.1646340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n340879|BC038218|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3344|NULL|4.5027600|-0.1646340	chr17	 74846257	 74847128	+	NA	NA	NA	NA	MGAT5B	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50chr17:74864798-74867916"	NA	inter
CUST_16152_PI429285431	1.1993947	A	0.9356203	A	1.20061566772607	0	lncRNA	17857-1_{1..726}	lnc-RASA1-3:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASA1-3:13	chr5	 87581561	 87582286	+	lnc-RASA1-3	lnc-RASA1-3:13	XLOC_004457	linc-POLR3G-10	NA	NA	NA	inter
CUST_15963_PI429285431	0.88370836	A	0.8782934	A	1.00376041694948	0	lncRNA	17661-1_{1..362}	lnc-HEXB-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HEXB-1:3	chr5	 73624048	 73624409	+	lnc-HEXB-1	lnc-HEXB-1:3	XLOC_004429	linc-HEXB-1	NA	NA	NA	inter
LNCA_21_P0002438	1.7192208	A	0.8798749	A	1.78923873932432	0	lncRNA	TCONS_00004245	NA	NA	NA	NA	XLOC_002085	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002085), lincRNA [TCONS_00004245]"	chr2:46727139-46727080	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00004245	TCONS_00004245	chr2	 46727080	 46727139	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28950_PI429285431	0.89303464	A	1.900763	A	0.497328715804872	0	lncRNA	30671-1_{1..1988}	n326380|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039135|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039135|-1.2501800|-0.3937051	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326380|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039135|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039135|-1.2501800|-0.3937051	chr1	147939620	147941607	+	NA	NA	NA	NA	PPIAL4A	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10chr1:147929620-147953911"	NA	inter
CUST_21423_PI429285431	6.882703	P	6.595456	P	1.2203094183345	0	lncRNA	23043-1_{1..192}	lnc-CBX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CBX1-1:1	chr17	 46137918	 46138109	-	lnc-CBX1-1	lnc-CBX1-1:1	ENSG00000266341.1	RP5-890E16.4	NFE2L1	NA	chr17:46127918-46138907	inner
CUST_43327_PI429285431	15.535704	P	15.700463	P	0.892077527160483	0	lncRNA	48157-2_{3001..6000}	ENST00000454051 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:29969382:29992343:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>ENST00000454051 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:29969382:29992343:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	chrHSCHR6_MHC_QBL	 29972382	 29975381	-	ENSG00000235814	ENST00000454051	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80"	NA	Unknown
LNCA_21_P0008799	2.8744984	A	3.7985907	P	0.527011993664989	0	lncRNA	TCONS_00023831	NA	NA	NA	NA	XLOC_011607	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011607), lincRNA [TCONS_00023831]"	chr15:99635799-99635740	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_00023831	TCONS_00023831	chr15	 99635740	 99635799	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00320986	5.8017793	P	5.9344263	P	0.91215632549775	0	lncRNA	ENST00000380331	XR_110931	XR_110931	NA	Hs.722573	LOC100506661	NA	ENST00000380331	THC2501410	NA	"PREDICTED: Homo sapiens hypothetical LOC100506661 (LOC100506661), miscRNA [XR_110931]"	chrX:15715473-15715532	hs|Xp22.2	Agilent_HUMAN_G3V2	ENST00000380331	ENST00000380331	chrX	 15715473	 15715532	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43156_PI429285431	0.8917445	A	0.90414625	A	0.991440603964621	0	lncRNA	47971-1_{1..710}	ENST00000587240 havana:sense_intronic chromosome:GRCh37:17:35355897:35357333:1 gene:ENSG00000267798 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000587240 havana:sense_intronic chromosome:GRCh37:17:35355897:35357333:1 gene:ENSG00000267798 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr17	 35355897	 35356606	+	ENSG00000267798	ENST00000587240	NA	NA	AATF	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90chr17:35345897-35367333"	NA	inner
CUST_5142_PI429285431	1.0249588	A	0.90220976	A	1.08880759836683	0	lncRNA	5082-1_{1..3000}	"transcript_id ""ENST00000558963.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558963.2"" | genecode_v17"	chr15	 36731173	 36734172	-	ENSG00000259737.2	ENST00000558963.2	RP11-475A13.1	RP11-475A13.1-002	NA	NA	NA	inter
LNCA_21_P0012298	6.7036915	P	6.941173	P	0.848224759134023	0	lncRNA	TCONS_l2_00018033	NA	NA	NA	NA	XLOC_l2_009539	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009539), lincRNA [TCONS_l2_00018033]"	chr22:35590675-35590616	hs|22q12.3	Agilent_HUMAN_G3V2	TCONS_l2_00018033	TCONS_l2_00018033	chr22	 35590616	 35590675	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18500_PI429285431	3.324046	P	2.3124752	A	2.01610503179519	0	lncRNA	20215-1_{1..561}	lnc-EIF3M-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EIF3M-2:5	chr11	 32459391	 32459951	+	lnc-EIF3M-2	lnc-EIF3M-2:5	ENSG00000183242	WT1-AS	WT1	NA	chr11:32449391-32457081	inter
CUST_24618_PI429285431	0.88529146	A	0.8889289	A	0.997481894479636	0	lncRNA	26167-1_{1..351}	lnc-YES1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YES1-2:1	chr18	   907592	   907942	-	lnc-YES1-2	lnc-YES1-2:1	ENSG00000265671.1	RP11-672L10.3	ADCYAP1	NA	chr18:904944-912173	inner
CUST_30112_PI429285431	6.8232536	P	6.904124	P	0.945487047809844	0	lncRNA	31885-1_{1..250}	n334661|AF517110|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243636|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243636|1.4176600|-0.0735940	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334661|AF517110|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243636|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243636|1.4176600|-0.0735940	chr12	 52282352	 52282601	+	NA	NA	NA	NA	ANKRD33	NA	chr12:52281793-52285505	inner
CUST_50827_PI429285431	5.44448	P	6.816659	P	0.386307341406256	0	lncRNA	54477-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00004566 range=chr11:65265310-65273493 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004566 range=chr11:65265310-65273493 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65265310	 65268309	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010178	1.8783863	A	0.8805829	A	1.99695718284083	0	lncRNA	ENST00000416641	NA	NA	NA	NA	XLOC_014011	NA	ENST00000416641	NA	NA	"BROAD Institute lincRNA (XLOC_014011), lincRNA [TCONS_00028874]"	chr21:19032640-19032581	hs|21q21.1	Agilent_HUMAN_G3V2	ENST00000416641	ENST00000416641	chr21	 19032581	 19032640	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41246_PI429285431	1.7886167	A	2.550664	A	0.589658963336502	0	lncRNA	42177-1_{1..103}	ENST00000582572 ncrna:miRNA chromosome:GRCh37:10:124176481:124176583:1 gene:ENSG00000265442 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582572 ncrna:miRNA chromosome:GRCh37:10:124176481:124176583:1 gene:ENSG00000265442 gene_biotype:miRNA transcript_biotype:miRNA	chr10	124176481	124176583	+	ENSG00000265442	ENST00000582572	NA	NA	PLEKHA1	NA	chr10:124166481-124186583	inner
CUST_4594_PI429285431	1.9244692	A	1.8034259	A	1.08752103043056	0	lncRNA	4543-1_{1..521}	"transcript_id ""ENST00000434565.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000434565.1"" | genecode_v17"	chr13	 38624954	 38625474	-	ENSG00000223685.1	ENST00000434565.1	LINC00571	LINC00571-001	NA	"hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70"	NA	inter
CUST_26489_PI429285431	5.212249	P	5.4656563	P	0.838912762787449	0	lncRNA	27998-1_{1..459}	lnc-CLIC2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CLIC2-1:2	chrX	154581174	154581632	-	lnc-CLIC2-1	lnc-CLIC2-1:2	ENSG00000224216.1	RP13-228J13.1	NA	NA	NA	inter
CUST_11002_PI429285431	0.9199202	A	0.89306664	A	1.01878777985136	0	lncRNA	12547-1_{1..997}	lnc-DENND1A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DENND1A-2:1	chr9	126760927	126761923	-	lnc-DENND1A-2	lnc-DENND1A-2:1	XLOC_007849	linc-DENND1A	NA	NA	NA	inter
CUST_14014_PI429285431	1.266788	A	0.9900849	A	1.21142332942942	0	lncRNA	15662-1_{1..265}	lnc-LYPLAL1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYPLAL1-1:2	chr1	219467719	219467983	+	lnc-LYPLAL1-1	lnc-LYPLAL1-1:2	XLOC_000566	linc-IARS2-3	NA	NA	NA	inter
CUST_36807_PI429285431	10.375676	P	11.272629	P	0.537019730509559	0	lncRNA	37979-1_{1..366}	n345286|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_835|NULL|-1.3280200|-0.1641469	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345286|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_835|NULL|-1.3280200|-0.1641469	chr14	104341054	104341419	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002645	2.3896077	A	2.0185075	A	1.29333875547419	0	lncRNA	ENST00000431336	XR_108384	XR_108384	NA	Hs.258100	XLOC_001964	NA	ENST00000431336	THC2631174	NA	"PREDICTED: Homo sapiens hypothetical LOC100506216 (LOC100506216), miscRNA [XR_108384]"	chr2:6790414-6790355	hs|2p25.2	Agilent_HUMAN_G3V2	ENST00000431336	ENST00000431336	chr2	  6790355	  6790414	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24221_PI429285431	0.88972956	A	0.9009859	A	0.992228058603004	0	lncRNA	25772-1_{1..587}	lnc-C10orf131-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf131-1:1	chr10	 97633189	 97633775	+	lnc-C10orf131-1	lnc-C10orf131-1:1	ENSG00000240527.1	RP11-429G19.3	ENTPD1	NA	chr10:97623189-97637023	inner
CUST_23629_PI429285431	4.1518283	P	4.443801	P	0.816784446908925	0	lncRNA	25195-1_{1..501}	lnc-TSC2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TSC2-1:2	chr16	  2145357	  2145857	+	lnc-TSC2-1	lnc-TSC2-1:2	ENSG00000259933.1	RP11-304L19.1	TSC2	"hg19_refFlat_PKD1:range=chr16:2139728-21856905'pad=0,hg19_refFlat_PKD1:range=chr16:2139728-21856905'pad=0 3'pad=0 strand=- repeatMasking=none,-101.00chr16:2135357-2138713"	NA	inner
LNCA_21_P0009017	1.9116552	A	0.9287328	A	1.97646498960621	0	lncRNA	TCONS_00024598	NA	NA	NA	NA	XLOC_011891	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011891), lincRNA [TCONS_00024598]"	chr16:20365598-20365539	hs|16p12.3	Agilent_HUMAN_G3V2	TCONS_00024598	TCONS_00024598	chr16	 20365539	 20365598	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40492_PI429285431	0.90088195	A	2.0366266	A	0.455099955389279	0	lncRNA	41257-1_{1..2092}	n409427|NR_033822_3|lncRNA|Homosapiens||RefGeneNoncode|NR_033822_3||-0.5164360|-0.3353538	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409427|NR_033822_3|lncRNA|Homosapiens||RefGeneNoncode|NR_033822_3||-0.5164360|-0.3353538	chr6	  1926891	  1928982	+	NA	NA	NA	NA	GMDS	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30chr6:1916891-1954728"	NA	inner
CUST_18545_PI429285431	1.3215837	A	1.9151686	A	0.662694155031656	0	lncRNA	20256-2_{3001..3663}	lnc-TCL1B-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCL1B-1:9	chr14	 96141308	 96141970	+	lnc-TCL1B-1	lnc-TCL1B-1:9	ENSG00000187621	TCL6	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50"	NA	inter
CUST_38441_PI429285431	3.1261897	A	1.287631	A	3.57652543126811	0	lncRNA	39466-2_{3001..4134}	n382687|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bjf.1||-0.0903248|-0.3610332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382687|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bjf.1||-0.0903248|-0.3610332	chr15	 83512837	 83513970	-	NA	NA	NA	NA	WHAMM	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90chr15:83499837-83503613"	NA	inter
CUST_23560_PI429285431	0.9075247	A	0.91842777	A	0.992471053356541	0	lncRNA	25127-1_{1..1049}	lnc-LPIN2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-LPIN2-2:1	chr18	  2561171	  2562219	-	lnc-LPIN2-2	lnc-LPIN2-2:1	ENSG00000266783.1	RP11-715F3.2	NDC80	NA	chr18:2571510-2572219	inner
CUST_7456_PI429285431	6.4831524	P	6.620018	P	0.909492975293161	0	lncRNA	9099-1_{1..1143}	lnc-TRPV2-1:27	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRPV2-1:27	chr17	 16366481	 16367623	+	lnc-TRPV2-1	lnc-TRPV2-1:27	ENSG00000175061	NCRNA00188	C17orf76	NA	chr17:16356481-16377300	inner
LNCA_21_P0005482	0.9001218	A	0.9183565	A	0.987440209982207	0	lncRNA	TCONS_00013744	NA	NA	NA	NA	XLOC_006386	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006386), lincRNA [TCONS_00013744]"	chr7:26266117-26266058	hs|7p15.2	Agilent_HUMAN_G3V2	TCONS_00013744	TCONS_00013744	chr7	 26266058	 26266117	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8357_PI429285431	5.926263	P	3.963651	P	3.89767013887745	0	lncRNA	9937-1_{1..2143}	lnc-XRN2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-XRN2-2:3	chr20	 21227117	 21229259	+	lnc-XRN2-2	lnc-XRN2-2:3	ENSG00000088970	PLK1S1	PLK1S1	NA	chr20:21217117-21227260	inner
CUST_31232_PI429285431	7.057909	P	7.669767	P	0.654353438538193	0	lncRNA	33022-1_{1..559}	n337680|BC043570|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|62|NULL|-0.7316130|-0.1285329	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337680|BC043570|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|62|NULL|-0.7316130|-0.1285329	chr15	 29967547	 29968105	+	NA	NA	NA	NA	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_25723_PI429285431	10.411442	P	11.386812	P	0.50860938909257	0	lncRNA	27251-1_{1..637}	lnc-EVX1-13:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EVX1-13:4	chr7	 27139398	 27140034	+	lnc-EVX1-13	lnc-EVX1-13:4	ENSG00000233429.4	HOTAIRM1	HOXA3	NA	chr7:27145809-27149585	inter
CUST_31519_PI429285431	0.884188	A	0.8948004	A	0.992671033682297	0	lncRNA	33278-2_{3001..3541}	n338005|BC047385|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|392|NULL|-1.1810400|-0.3309206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338005|BC047385|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|392|NULL|-1.1810400|-0.3309206	chr22	 27679303	 27679843	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49046_PI429285431	2.1482701	A	1.878968	A	1.20522466233208	0	lncRNA	52874-1_{1..923}	hg19_lincRNAsTranscripts_TCONS_l2_00021349 range=chr4:150636850-150736985 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021349 range=chr4:150636850-150736985 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	150636850	150637772	-	NA	NA	NA	NA	LOC285423	NA	chr4:150626850-150736980	inter
CUST_47023_PI429285431	9.739588	P	9.469934	P	1.20551867477133	0	lncRNA	51115-2_{3001..3312}	"gi|186972140|ref|NR_023312.1| Homo sapiens cold inducible RNA binding protein (CIRBP), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|186972140|ref|NR_023312.1| Homo sapiens cold inducible RNA binding protein (CIRBP), transcript variant 2, non-coding RNA"	Chr19	  1272267	  1272578	+	1153	NR_023312.1	NA	NA	NA	NA	NA	inter
CUST_11320_PI429285431	0.88557833	A	1.1200229	A	0.85001218637134	0	lncRNA	12883-1_{1..1375}	lnc-ZNF516-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF516-5:1	chr18	 74350165	 74351539	-	lnc-ZNF516-5	lnc-ZNF516-5:1	XLOC_012893	linc-ZNF516-1	NA	NA	NA	inter
LNCA_21_P0011265	0.88504636	A	2.0152109	A	0.456863616648091	0	lncRNA	TCONS_l2_00008028	NA	NA	NA	NA	XLOC_l2_004381	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004381), lincRNA [TCONS_l2_00008028]"	chr14:39214395-39214336	hs|14q21.1	Agilent_HUMAN_G3V2	TCONS_l2_00008028	TCONS_l2_00008028	chr14	 39214336	 39214395	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17506_PI429285431	1.7436624	A	0.91858035	A	1.77163579309692	0	lncRNA	19231-1_{1..437}	lnc-CDKN1C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDKN1C-1:1	chr11	  2902335	  2902771	-	lnc-CDKN1C-1	lnc-CDKN1C-1:1	XLOC_009361	linc-TRPM5	SLC22A18AS	NA	chr11:2909327-2912339	inter
CUST_47610_PI429285431	5.9650245	P	5.0517206	P	1.88335361089542	0	lncRNA	51607-7_{18001..19296}	"gi|383087740|ref|NR_001564.2| Homo sapiens X (inactive)-specific transcript (non-protein coding) (XIST), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|383087740|ref|NR_001564.2| Homo sapiens X (inactive)-specific transcript (non-protein coding) (XIST), non-coding RNA"	ChrX	 73058486	 73059781	-	7503	NR_001564.2	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_21952_PI429285431	1.2328048	A	0.8836074	A	1.27385176104047	0	lncRNA	23560-1_{1..212}	lnc-STX8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STX8-1:1	chr17	  9548553	  9548764	-	lnc-STX8-1	lnc-STX8-1:1	ENSG00000265349.1	RP11-55L4.2	USP43	NA	chr17:9538553-9558642	inter
CUST_50006_PI429285431	0.8875469	A	0.88349205	A	1.00281456130633	0	lncRNA	53743-1_{1..1336}	hg19_lincRNAsTranscripts_TCONS_l2_00028479 range=chr8:39172110-39251795 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028479 range=chr8:39172110-39251795 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 39172110	 39173445	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19980_PI429285431	2.637338	A	2.9382625	A	0.811732059924799	0	lncRNA	21633-1_{1..548}	lnc-AGPAT6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGPAT6-1:2	chr8	 41521381	 41521928	+	lnc-AGPAT6-1	lnc-AGPAT6-1:2	ENSG00000253389.2	RP11-930P14.1	ANK1	"hg19_refFlat_ANK1:range=chr8:41518984-416550565'pad=0,hg19_refFlat_ANK1:range=chr8:41518984-416550565'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_ANK1:range=chr8:41518984-415225415'pad=0,hg19_refFlat_ANK1:range=chr8:41518984-415225415'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90chr8:41511381-41531504"	NA	inner
CUST_23860_PI429285431	0.8865497	A	0.8821591	A	1.00304796764723	0	lncRNA	25422-1_{1..2482}	lnc-EFNB2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-EFNB2-4:1	chr13	106157931	106160412	-	lnc-EFNB2-4	lnc-EFNB2-4:1	ENSG00000232307.1	DAOA-AS1	NA	"hg19_refFlat_DAOA:range=chr13:106118638-1061424305'pad=0,hg19_refFlat_DAOA:range=chr13:106118638-1061424305'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_DAOA:range=chr13:106124947-1061424305'pad=0,hg19_refFlat_DAOA:range=chr13:106124947-1061424305'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_DAOA:range=chr13:106124967-1061424305'pad=0,hg19_refFlat_DAOA:range=chr13:106124967-1061424305'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00"	NA	inter
CUST_15690_PI429285431	0.8815003	A	1.1417575	A	0.834939055349475	0	lncRNA	17377-1_{1..618}	lnc-C10orf120-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf120-1:1	chr10	124133391	124134008	-	lnc-C10orf120-1	lnc-C10orf120-1:1	XLOC_008975	linc-NSMCE4A-1	PLEKHA1	NA	chr10:124134094-124143962	inter
CUST_5712_PI429285431	7.476675	P	7.452589	P	1.01683528570534	0	lncRNA	5636-1_{1..515}	"transcript_id ""ENST00000575487.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000575487.1"" | genecode_v17"	chr17	  3066299	  3066813	-	ENSG00000261848.1	ENST00000575487.1	CTD-2309O5.3	CTD-2309O5.3-002	OR1A2	NA	chr17:3057184-3090325	inter
LNCA_21_P0001929	0.87729174	A	0.8814315	A	0.99713465000173	0	lncRNA	ENST00000429916	NA	NA	NA	NA	XLOC_001713	NA	ENST00000429916	NA	NA	"BROAD Institute lincRNA (XLOC_001713), lincRNA [TCONS_00003037]"	chr2:154213804-154213863	hs|2q23.3	Agilent_HUMAN_G3V2	ENST00000429916	ENST00000429916	chr2	154213804	154213863	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_195_PI429201921	1.2327304	A	0.91854274	A	1.24331138335751	0	lncRNA	157-2_{3001..4990}	TC09002563.hg.1	TCONS_l2_00029366-XLOC_l2_015215 // Broad TUCP // linc-FAM75A7-31 chr9:-:68773915-68778906 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:-:68773915-68778906	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00029366-XLOC_l2_015215	linc-FAM75A7-31	chr9	 68773915	 68778906	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5792_PI429285431	4.40972	P	4.881221	P	0.721213846359245	0	lncRNA	5714-1_{1..87}	"transcript_id ""ENST00000584932.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584932.1"" | genecode_v17"	chr17	 25620936	 25621022	-	ENSG00000263583.1	ENST00000584932.1	MIR4522	MIR4522-001	WSB1	NA	chr17:25621106-25631022	inter
CUST_22803_PI429285431	0.8950878	A	0.92490333	A	0.979545539033368	0	lncRNA	24383-1_{1..463}	lnc-ERICH1-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ERICH1-8:1	chr8	  3232662	  3233124	-	lnc-ERICH1-8	lnc-ERICH1-8:1	ENSG00000253162.1	RP11-279L11.1	CSMD1	NA	chr8:3222662-3242748	inner
CUST_46849_PI429285431	4.534211	P	4.644968	P	0.926101997163323	0	lncRNA	50983-1_{1..3000}	"gi|307133758|ref|NR_036623.1| Homo sapiens DBF4 homolog B (S. cerevisiae) (DBF4B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|307133758|ref|NR_036623.1| Homo sapiens DBF4 homolog B (S. cerevisiae) (DBF4B), transcript variant 3, non-coding RNA"	Chr17	 42785976	 42788975	+	80174	NR_036623.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0013502	2.9281702	P	3.1119237	P	0.880409428154428	0	lncRNA	TCONS_l2_00028009	NA	NA	NA	NA	XLOC_l2_014369	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014369), lincRNA [TCONS_l2_00028009]"	chr8:142524445-142524504	hs|8q24.3	Agilent_HUMAN_G3V2	TCONS_l2_00028009	TCONS_l2_00028009	chr8	142524445	142524504	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23935_PI429285431	0.87690496	A	1.0827177	A	0.867050098222258	0	lncRNA	25492-1_{1..392}	lnc-UBAC2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBAC2-2:1	chr13	 99486630	 99487021	+	lnc-UBAC2-2	lnc-UBAC2-2:1	ENSG00000229918.1	DOCK9-AS1	DOCK9	NA	chr13:99476630-99496883	inner
LNCA_21_P0002160	4.60602	P	4.982697	P	0.770209594494727	0	lncRNA	TCONS_00003550	NA	NA	NA	NA	XLOC_001323	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001323), lincRNA [TCONS_00003550]"	chr2:3606322-3608947	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00003550	TCONS_00003550	chr2	  3606322	  3608947	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10853_PI429285431	7.697044	P	7.7524714	P	0.962309315671087	0	lncRNA	12391-1_{1..709}	lnc-RPAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPAP1-1:1	chr15	 41904733	 41905441	-	lnc-RPAP1-1	lnc-RPAP1-1:1	XLOC_011451	linc-RPAP1	NA	NA	NA	inter
CUST_13207_PI429285431	2.9998775	A	2.4051824	A	1.51015339514767	0	lncRNA	14835-1_{1..970}	lnc-RP11-677O4.1.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RP11-677O4.1.1-2:3	chr18	 11489325	 11490294	-	lnc-RP11-677O4.1.1-2	lnc-RP11-677O4.1.1-2:3	XLOC_012769	linc-FAM38B-2	NA	NA	NA	inter
LNCA_21_P0006807	0.87817216	A	0.879127	A	0.999338374316976	0	lncRNA	TCONS_00018077	NA	NA	NA	NA	XLOC_008334	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008334), lincRNA [TCONS_00018077]"	chr10:737620-737679	hs|10p15.3	Agilent_HUMAN_G3V2	TCONS_00018077	TCONS_00018077	chr10	   737620	   737679	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005177	0.87884927	A	0.8798723	A	0.999291140999206	0	lncRNA	TCONS_00012804	NA	NA	NA	NA	XLOC_005856	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005856), lincRNA [TCONS_00012804]"	chr6:139778872-139778813	hs|6q24.1	Agilent_HUMAN_G3V2	TCONS_00012804	TCONS_00012804	chr6	139778813	139778872	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9464_PI429285431	0.8901241	A	1.0678767	A	0.884079124031347	0	lncRNA	10970-1_{1..909}	lnc-NRL-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NRL-3:1	chr14	 24347876	 24348784	-	lnc-NRL-3	lnc-NRL-3:1	XLOC_010972	linc-JPH4-1	NA	NA	NA	inter
CUST_31989_PI429285431	0.87405366	A	0.87752485	A	0.997596846645875	0	lncRNA	33711-1_{1..258}	n338548|AF387613|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|952|NULL|-0.2194090|-0.2403282	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338548|AF387613|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|952|NULL|-0.2194090|-0.2403282	chr1	227884732	227884989	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21437_PI429285431	0.9147265	A	0.9013443	A	1.00931898807594	0	lncRNA	23056-1_{1..783}	lnc-KCNMB4-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNMB4-1:9	chr12	 70931830	 70932612	+	lnc-KCNMB4-1	lnc-KCNMB4-1:9	ENSG00000258168.1	RP11-588H23.3	PTPRB	"hg19_refFlat_PTPRB:range=chr12:70915269-710035945'pad=0,hg19_refFlat_PTPRB:range=chr12:70915269-710035945'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PTPRB:range=chr12:70915269-710311755'pad=0,hg19_refFlat_PTPRB:range=chr12:70915269-710311755'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10chr12:70921830-70942443"	NA	inner
CUST_9894_PI429285431	3.3628995	P	3.598492	P	0.849336113904142	0	lncRNA	11418-1_{1..1185}	lnc-LRRC58-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC58-1:1	chr3	120086211	120087395	-	lnc-LRRC58-1	lnc-LRRC58-1:1	XLOC_003225	linc-LRRC58	NA	NA	NA	inter
CUST_44306_PI429285431	4.0125756	P	4.1531215	P	0.907175824970191	0	lncRNA	48939-1_{1..3000}	"gi|294997263|ref|NR_033519.1| Homo sapiens mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) (MASP1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|294997263|ref|NR_033519.1| Homo sapiens mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) (MASP1), transcript variant 4, non-coding RNA"	Chr3	186951870	186954869	-	5648	NR_033519.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003625	0.880049	A	0.8830287	A	0.997936760756418	0	lncRNA	TCONS_00008138	NA	NA	NA	NA	XLOC_003590	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003590), lincRNA [TCONS_00008138]"	chr4:83218608-83218667	hs|4q21.22	Agilent_HUMAN_G3V2	TCONS_00008138	TCONS_00008138	chr4	 83218608	 83218667	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28221_PI429285431	6.367941	P	6.379583	P	0.991962852498966	0	lncRNA	29854-1_{1..590}	n325508|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322388|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322388|-1.0731200|-0.3879867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325508|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322388|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322388|-1.0731200|-0.3879867	chr2	   296058	   296647	-	NA	NA	NA	NA	FAM150B	NA	chr2:286058-288308	inter
CUST_11256_PI429285431	3.0711317	P	2.9896054	P	1.05813690511729	0	lncRNA	12814-1_{1..626}	lnc-C17orf48-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C17orf48-4:1	chr17	 10751209	 10751834	+	lnc-C17orf48-4	lnc-C17orf48-4:1	XLOC_012111	linc-SHISA6-2	PIRT	NA	chr17:10741209-10741418	inter
CUST_30555_PI429285431	10.062185	P	8.23227	P	3.55516125724553	0	lncRNA	32336-1_{1..391}	n335734|X01655|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000320903|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000320903|1.4078400|-0.1493732	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335734|X01655|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000320903|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000320903|1.4078400|-0.1493732	chr2	189871654	189872044	+	NA	NA	NA	NA	COL3A1	NA	chr2:189861654-189877472	inner
CUST_16984_PI429285431	0.8802453	A	0.8877721	A	0.9947964056491	0	lncRNA	18693-1_{1..623}	lnc-FAT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAT1-2:1	chr4	188122781	188123403	-	lnc-FAT1-2	lnc-FAT1-2:1	XLOC_004216	linc-FAT1-9	NA	NA	NA	inter
CUST_20563_PI429285431	0.8954028	A	0.8788237	A	1.01155804031683	0	lncRNA	22204-1_{1..1212}	lnc-MYOM2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYOM2-2:1	chr8	  2142013	  2143224	+	lnc-MYOM2-2	lnc-MYOM2-2:1	ENSG00000254304.1	RP11-1049H7.1	NA	NA	NA	inter
CUST_30665_PI429285431	1.7916698	A	1.5174334	A	1.20935382430839	0	lncRNA	32447-1_{1..238}	n336109|X90753|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324414|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324414|0.9822840|-0.1848652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336109|X90753|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324414|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324414|0.9822840|-0.1848652	chr19	 55396828	 55397065	+	NA	NA	NA	NA	FCAR	NA	chr19:55386828-55401839	inner
CUST_3296_PI429285431	4.997745	P	5.4820952	P	0.714818956864037	0	lncRNA	3274-1_{1..487}	"transcript_id ""ENST00000531948.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531948.1"" | genecode_v17"	chr8	125948766	125949252	-	ENSG00000255313.1	ENST00000531948.1	RP11-1082L8.2	RP11-1082L8.2-001	NA	NA	NA	inter
LNCA_21_P0004307	0.8726289	A	0.877273	A	0.996786130748589	0	lncRNA	TCONS_00010109	NA	NA	NA	NA	XLOC_004577	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004577), lincRNA [TCONS_00010109]"	chr5:139548668-139548727	hs|5q31.3	Agilent_HUMAN_G3V2	TCONS_00010109	TCONS_00010109	chr5	139548668	139548727	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009697	3.4203632	P	3.5808	P	0.894754128169442	0	lncRNA	TCONS_00026966	NA	NA	NA	NA	XLOC_013018	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013018), lincRNA [TCONS_00026966]"	chr19:23290726-23290785	hs|19p12	Agilent_HUMAN_G3V2	TCONS_00026966	TCONS_00026966	chr19	 23290726	 23290785	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19412_PI429285431	8.0418215	P	9.259436	P	0.42999312547752	0	lncRNA	21073-2_{3001..3897}	lnc-CTD-2517M22.14.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2517M22.14.1-2:1	chr8	145745986	145746882	-	lnc-CTD-2517M22.14.1-2	lnc-CTD-2517M22.14.1-2:1	ENSG00000160957.7	RECQL4	C8orf82	NA	chr8:145751603-145753229	inner
LNCA_21_P0009314	5.4415	P	5.191012	P	1.18960943927588	0	lncRNA	AK097122	NA	AK097122	NA	Hs.560510	XLOC_012444	NA	NA	THC2674662	NA	"BROAD Institute lincRNA (XLOC_012444), lincRNA [TCONS_00025612]"	chr17:33559656-33559597	hs|17q12	Agilent_HUMAN_G3V2	AK097122	AK097122	chr17	 33559597	 33559656	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010285	0.9009634	A	0.92652345	A	0.982439144504695	0	lncRNA	TCONS_00029143	NA	NA	NA	NA	XLOC_014083	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014083), lincRNA [TCONS_00029143]"	chr21:40452759-40452700	hs|21q22.2	Agilent_HUMAN_G3V2	TCONS_00029143	TCONS_00029143	chr21	 40452700	 40452759	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008652	4.727495	P	5.1306806	P	0.756186710387966	0	lncRNA	TCONS_00023453	NA	NA	NA	NA	XLOC_011299	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011299), lincRNA [TCONS_00023453]"	chr15:72082536-72082595	hs|15q23	Agilent_HUMAN_G3V2	TCONS_00023453	TCONS_00023453	chr15	 72082536	 72082595	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14872_PI429285431	4.831454	P	5.4304204	P	0.660226796842361	0	lncRNA	16537-1_{1..399}	lnc-MRPS18A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPS18A-3:1	chr6	 43835851	 43836249	-	lnc-MRPS18A-3	lnc-MRPS18A-3:1	XLOC_005731	linc-MRPS18A-2	NA	NA	NA	inter
LNCA_19_P00810009	0.90525705	A	0.9287036	A	0.98387943973923	0	lncRNA	ENST00000551631	XR_110299	XR_110299	NA	Hs.728856	LOC100506948	NA	ENST00000551631	THC2501472	NA	"PREDICTED: Homo sapiens hypothetical LOC100506948 (LOC100506948), miscRNA [XR_110299]"	chr15:25245423-25245482	hs|15q11.2	Agilent_HUMAN_G3V2	ENST00000551631	ENST00000551631	chr15	 25245423	 25245482	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17748_PI429285431	0.88550305	A	0.9218276	A	0.975136069346434	0	lncRNA	19478-1_{1..1299}	lnc-TTC27-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC27-1:13	chr2	 33162095	 33163393	+	lnc-TTC27-1	lnc-TTC27-1:13	XLOC_001418	linc-LTBP1	NA	NA	NA	inter
CUST_13101_PI429285431	1.6183711	A	1.5107561	A	1.07744557775473	0	lncRNA	14725-1_{1..354}	lnc-DUSP26-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DUSP26-1:1	chr8	 33467050	 33467403	-	lnc-DUSP26-1	lnc-DUSP26-1:1	XLOC_007050	linc-DUSP26-2	DUSP26	NA	chr8:33457050-33457439	inter
CUST_45788_PI429285431	7.3092127	P	5.8085384	P	2.82974940986526	0	lncRNA	50128-2_{3001..3844}	"gi|219277647|ref|NR_024625.1| Homo sapiens apoptosis inhibitor 5 (API5), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219277647|ref|NR_024625.1| Homo sapiens apoptosis inhibitor 5 (API5), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_024625.1	NA	NA	NA	NA	NA	Unknown
CUST_32517_PI429285431	4.6930094	P	4.6246405	P	1.04853055259557	0	lncRNA	34184-1_{1..1666}	n339122|CR621362|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1552|NULL|3.3197600|-0.3377742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339122|CR621362|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1552|NULL|3.3197600|-0.3377742	chr2	215632202	215633867	-	NA	NA	NA	NA	BARD1	NA	chr2:215622202-215674428	inner
CUST_34156_PI429285431	1.5615745	A	1.3813301	A	1.13307581794076	0	lncRNA	35674-1_{1..306}	n340999|AJ011596|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3465|NULL|-0.8274020|-0.1847036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340999|AJ011596|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3465|NULL|-0.8274020|-0.1847036	chr11	 27848708	 27849013	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4388_PI429285431	2.8785558	A	2.9214106	A	0.970732164163379	0	lncRNA	4339-1_{1..379}	"transcript_id ""ENST00000548740.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548740.1"" | genecode_v17"	chr12	 96816104	 96816482	-	ENSG00000258272.1	ENST00000548740.1	RP11-510I5.4	RP11-510I5.4-001	C12orf55	NA	chr12:96883388-96889220	inter
CUST_41670_PI429285431	2.0594792	A	2.468804	A	0.752975693649427	0	lncRNA	43102-1_{1..73}	ENST00000578598 ncrna:miRNA chromosome:GRCh37:8:12584741:12584813:-1 gene:ENSG00000266206 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578598 ncrna:miRNA chromosome:GRCh37:8:12584741:12584813:-1 gene:ENSG00000266206 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 12584741	 12584813	-	ENSG00000266206	ENST00000578598	NA	NA	LONRF1	NA	chr8:12574741-12594813	inner
LNCA_21_P0011171	4.1267495	P	0.9133583	A	9.27528235220263	0	lncRNA	TCONS_l2_00007050	NA	NA	NA	NA	XLOC_l2_003886	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003886), lincRNA [TCONS_l2_00007050]"	chr13:19648173-19648114	hs|13q12.11	Agilent_HUMAN_G3V2	TCONS_l2_00007050	TCONS_l2_00007050	chr13	 19648114	 19648173	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25315_PI429285431	2.49561	A	0.8914695	A	3.04014576960658	0	lncRNA	26845-1_{1..387}	lnc-RP11-683L23.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-683L23.1.1-1:2	chr18	    73312	    73698	-	lnc-RP11-683L23.1.1-1	lnc-RP11-683L23.1.1-1:2	ENSG00000262735.1	RP11-683L23.4	NA	NA	NA	inter
LNCA_21_P0003209	0.8914771	A	0.90612936	A	0.989895227058731	0	lncRNA	TCONS_00006772	NA	NA	NA	NA	XLOC_003405	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003405), lincRNA [TCONS_00006772]"	chr3:197368058-197366375	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00006772	TCONS_00006772	chr3	197366375	197368058	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006980	7.8930745	P	8.761703	P	0.547667243844088	0	lncRNA	TCONS_00018462	NA	NA	NA	NA	XLOC_008760	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008760), lincRNA [TCONS_00018462]"	chr10:28615190-28615131	hs|10p12.1	Agilent_HUMAN_G3V2	TCONS_00018462	TCONS_00018462	chr10	 28615131	 28615190	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49602_PI429285431	0.90437067	A	1.6000857	A	0.617403244690264	0	lncRNA	53392-1_{1..471}	hg19_lincRNAsTranscripts_TCONS_l2_00025531 range=chr6:160921638-160922375 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025531 range=chr6:160921638-160922375 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	160921638	160922108	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19536_PI429285431	1.0410815	A	0.88814706	A	1.11182863184172	0	lncRNA	21192-1_{1..788}	lnc-RGS5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RGS5-1:2	chr1	163291412	163292199	-	lnc-RGS5-1	lnc-RGS5-1:2	ENSG00000232995.2	RP11-267N12.3	NUF2	NA	chr1:163291723-163301582	inner
CUST_43118_PI429285431	3.4032762	P	3.8735409	P	0.721832146693506	0	lncRNA	47933-1_{1..694}	ENST00000602413 havana:3prime_overlapping_ncrna chromosome:GRCh37:12:58117544:58118237:-1 gene:ENSG00000257499 gene_biotype:3prime_overlapping_ncrna transcript_biotype:3prime_overlapping_ncrna	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602413 havana:3prime_overlapping_ncrna chromosome:GRCh37:12:58117544:58118237:-1 gene:ENSG00000257499 gene_biotype:3prime_overlapping_ncrna transcript_biotype:3prime_overlapping_ncrna	chr12	 58117544	 58118237	-	ENSG00000257499	ENST00000602413	NA	NA	OS9	NA	chr12:58107544-58115340	inner
CUST_2405_PI429285431	4.5632873	P	4.781	P	0.859927716217371	0	lncRNA	2397-1_{1..681}	"transcript_id ""ENST00000522975.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522975.1"" | genecode_v17"	chr5	157602404	157603084	+	ENSG00000253673.1	ENST00000522975.1	CTC-436K13.1	CTC-436K13.1-001	NA	NA	NA	inter
LNCA_21_P0003967	0.88195103	A	0.9823561	A	0.932771057718555	0	lncRNA	ENST00000505784	NA	NA	NA	NA	XLOC_004285	NA	ENST00000505784	THC2742778	NA	"BROAD Institute lincRNA (XLOC_004285), lincRNA [TCONS_00009347]"	chr5:8528732-8528791	hs|5p15.31	Agilent_HUMAN_G3V2	ENST00000505784	ENST00000505784	chr5	  8528732	  8528791	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8060_PI429285431	14.350338	P	13.25103	P	2.14251900251066	0	lncRNA	9667-1_{1..745}	lnc-SERPINC1-1:22	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SERPINC1-1:22	chr1	173836129	173836873	-	lnc-SERPINC1-1	lnc-SERPINC1-1:22	ENSG00000234741	GAS5	DARS2	NA	chr1:173826129-173827682	inter
CUST_19883_PI429285431	1.3408191	A	1.3545381	A	0.990535784116409	0	lncRNA	21539-1_{1..571}	lnc-ANP32A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANP32A-2:2	chr15	 69590817	 69591387	-	lnc-ANP32A-2	lnc-ANP32A-2:2	ENSG00000261634.1	RP11-352D13.6	PAQR5	NA	chr15:69591294-69601097	inter
CUST_32738_PI429285431	1.4149289	A	1.2836776	A	1.09524323228273	0	lncRNA	34378-1_{1..419}	n339366|BC044724|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1798|NULL|-0.8172160|-0.2404307	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339366|BC044724|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1798|NULL|-0.8172160|-0.2404307	chr3	 52310341	 52310759	-	NA	NA	NA	NA	WDR82	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00chr3:52300341-52312659"	NA	inner
CUST_4554_PI429285431	0.89084715	A	0.9037452	A	0.991099598185597	0	lncRNA	4503-1_{1..405}	"transcript_id ""ENST00000443719.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443719.1"" | genecode_v17"	chr13	 21808707	 21809111	+	ENSG00000233405.1	ENST00000443719.1	RP11-101P17.10	RP11-101P17.10-001	NA	NA	NA	inter
CUST_10092_PI429285431	1.1202836	A	1.7156612	A	0.661871199404147	0	lncRNA	11618-1_{1..1010}	lnc-RAD23B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAD23B-1:1	chr9	110100744	110101753	+	lnc-RAD23B-1	lnc-RAD23B-1:1	XLOC_007505	linc-ACTL7A-11	RAD23B	NA	chr9:110090744-110094470	inter
CUST_12128_PI429285431	1.0219026	A	0.89905393	A	1.08888279211442	0	lncRNA	13725-1_{1..617}	lnc-NTRK2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTRK2-2:3	chr9	 87198998	 87199614	+	lnc-NTRK2-2	lnc-NTRK2-2:3	XLOC_007429	linc-NTRK2-3	NA	NA	NA	inter
LNCA_21_P0006819	0.94061166	A	0.88265955	A	1.04098704173469	0	lncRNA	TCONS_00018093	NA	NA	NA	NA	XLOC_008359	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008359), lincRNA [TCONS_00018093]"	chr10:4379333-4379392	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_00018093	TCONS_00018093	chr10	  4379333	  4379392	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45286_PI429285431	1.9639479	A	1.3357927	A	1.54558735914254	0	lncRNA	49734-1_{1..1190}	"gi|397139299|ref|XR_159061.1| PREDICTED: Homo sapiens uncharacterized LOC100287098 (LOC100287098), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139299|ref|XR_159061.1| PREDICTED: Homo sapiens uncharacterized LOC100287098 (LOC100287098), misc_RNA"	Chr8	145653305	145654494	+	100287098	XR_159061.2	NA	NA	NA	"hg19_refFlat_TONSL:range=chr8:145654526-1456697975'pad=0,hg19_refFlat_TONSL:range=chr8:145654526-1456697975'pad=0 3'pad=0 strand=- repeatMasking=none,-102.40"	NA	inter
LNCA_21_P0008026	0.8773016	A	0.8815566	A	0.997055003780919	0	lncRNA	TCONS_00021712	NA	NA	NA	NA	XLOC_010296	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010296), lincRNA [TCONS_00021712]"	chr13:21771864-21771923	hs|13q12.11	Agilent_HUMAN_G3V2	TCONS_00021712	TCONS_00021712	chr13	 21771864	 21771923	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22542_PI429285431	0.8994394	A	0.9091557	A	0.993287802162519	0	lncRNA	24129-1_{1..518}	lnc-DCTD-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DCTD-3:1	chr4	183628909	183629426	-	lnc-DCTD-3	lnc-DCTD-3:1	ENSG00000248816.1	RP11-18D7.3	ODZ3	NA	chr4:183618909-183639195	inner
CUST_14657_PI429285431	4.6885233	P	5.5263615	P	0.559481293505612	0	lncRNA	16326-1_{1..1049}	lnc-AC092327.1-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AC092327.1-2:9	chr16	 86256540	 86257588	-	lnc-AC092327.1-2	lnc-AC092327.1-2:9	XLOC_012044	linc-COX4NB-7	NA	NA	NA	inter
CUST_4092_PI429285431	0.9011644	A	0.909686	A	0.994110687378201	0	lncRNA	4053-1_{1..921}	"transcript_id ""ENST00000452629.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452629.1"" | genecode_v17"	chr11	116367616	116368536	-	ENSG00000236437.1	ENST00000452629.1	AP001891.1	AP001891.1-001	NA	NA	NA	inter
CUST_30422_PI429285431	8.808216	P	10.291049	P	0.357785543281548	0	lncRNA	32202-1_{1..234}	n335557|CR407630|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267127|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267127|1.1098700|-0.1622619	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335557|CR407630|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267127|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267127|1.1098700|-0.1622619	chr9	 91926208	 91926441	+	NA	NA	NA	NA	SECISBP2	NA	chr9:91933412-91941337	inner
CUST_32570_PI429285431	0.89576143	A	1.6756109	A	0.582427560232415	0	lncRNA	34234-1_{1..533}	n339187|CR611002|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1618|NULL|-1.0168100|-0.2922696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339187|CR611002|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1618|NULL|-1.0168100|-0.2922696	chr16	 31716048	 31716580	+	NA	NA	NA	NA	ZNF720	NA	chr16:31724550-31726581	inter
CUST_32084_PI429285431	1.8812089	A	2.5140874	A	0.644888433856914	0	lncRNA	33791-1_{1..724}	n338648|CR590189|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1062|NULL|-1.1031800|-0.1994491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338648|CR590189|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1062|NULL|-1.1031800|-0.1994491	chr13	 34653547	 34654270	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6264_PI429285431	2.9839609	A	3.0863335	P	0.931499822906872	0	lncRNA	6189-1_{1..391}	"transcript_id ""ENST00000577258.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577258.1"" | genecode_v17"	chr18	 73959680	 73960070	+	ENSG00000266014.1	ENST00000577258.1	RP11-94B19.2	RP11-94B19.2-001	NA	NA	NA	inter
CUST_6188_PI429285431	2.3902416	A	1.0989656	A	2.44744425466697	0	lncRNA	6112-1_{1..3000}	"transcript_id ""ENST00000589125.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589125.1"" | genecode_v17"	chr18	 52773135	 52776134	-	ENSG00000267013.1	ENST00000589125.1	CTD-2171N6.1	CTD-2171N6.1-001	NA	NA	NA	inter
CUST_16676_PI429285431	1.3487475	A	1.0820144	A	1.20308043434793	0	lncRNA	18381-1_{1..1303}	lnc-ERICH1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERICH1-2:1	chr8	  1236927	  1238229	-	lnc-ERICH1-2	lnc-ERICH1-2:1	XLOC_006972	linc-ERICH1-7	NA	NA	NA	inter
CUST_47898_PI429285431	1.5835285	A	0.87664354	A	1.63227592999827	0	lncRNA	51791-1_{1..1740}	"gi|410171830|ref|XR_171405.1| PREDICTED: Homo sapiens chromosome 3 open reading frame 56 (C3orf56), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171830|ref|XR_171405.1| PREDICTED: Homo sapiens chromosome 3 open reading frame 56 (C3orf56), misc_RNA"	NA	NA	NA	NA	NA	XR_171405.1	NA	NA	NA	NA	NA	Unknown
CUST_6292_PI429285431	0.89513355	A	0.90085953	A	0.996038918966943	0	lncRNA	6216-1_{1..829}	"transcript_id ""ENST00000586061.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586061.1"" | genecode_v17"	chr19	   782796	   783624	+	ENSG00000267530.1	ENST00000586061.1	AC006273.5	AC006273.5-001	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.92;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.00"	NA	inter
LNCA_21_P0006462	0.8804531	A	0.8822721	A	0.998739959796705	0	lncRNA	ENST00000422226	NA	NA	NA	NA	XLOC_008222	NA	ENST00000422226	NA	NA	"BROAD Institute lincRNA (XLOC_008222), lincRNA [TCONS_00017087]"	chrX:119251806-119251595	hs|Xq24	Agilent_HUMAN_G3V2	ENST00000422226	ENST00000422226	chrX	119251595	119251806	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51220_PI429285431	1.543045	A	0.90213656	A	1.55931072111997	0	lncRNA	54838-1_{1..1792}	hg19_lincRNAsTranscripts_TCONS_l2_00008404 range=chr15:21184341-21209666 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008404 range=chr15:21184341-21209666 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 21184341	 21186132	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2767_PI429285431	5.6278324	P	5.6748395	P	0.967942263304215	0	lncRNA	2750-1_{1..359}	"transcript_id ""ENST00000434321.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434321.1"" | genecode_v17"	chr7	 13893980	 13894338	-	ENSG00000224330.1	ENST00000434321.1	AC005019.3	AC005019.3-001	NA	NA	NA	inter
CUST_33188_PI429285431	0.89494663	A	0.8900491	A	1.00340047766185	0	lncRNA	34780-1_{1..667}	n339880|BC041440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2328|NULL|-1.0521700|-0.2507676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n339880|BC041440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2328|NULL|-1.0521700|-0.2507676	chr4	 20393818	 20394484	+	NA	NA	NA	NA	SLIT2	NA	chr4:20383818-20406479	inner
CUST_42000_PI429285431	0.89922327	A	0.89251596	A	1.00465997709529	0	lncRNA	43835-1_{1..105}	ENST00000577566 ncrna:miRNA chromosome:GRCh37:5:170813660:170813764:-1 gene:ENSG00000264249 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577566 ncrna:miRNA chromosome:GRCh37:5:170813660:170813764:-1 gene:ENSG00000264249 gene_biotype:miRNA transcript_biotype:miRNA	chr5	170813660	170813764	-	ENSG00000264249	ENST00000577566	NA	NA	NPM1	NA	chr5:170814708-170823764	inter
CUST_15087_PI429285431	1.2329887	A	1.9301847	A	0.616769786813803	0	lncRNA	16750-1_{1..1208}	lnc-OLFM4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OLFM4-4:1	chr13	 54927277	 54928484	+	lnc-OLFM4-4	lnc-OLFM4-4:1	XLOC_010399	linc-PRR20A-3	NA	NA	NA	inter
CUST_6812_PI429285431	0.888106	A	1.4585574	A	0.673406055710526	0	lncRNA	6760-1_{1..778}	"transcript_id ""ENST00000447405.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447405.1"" | genecode_v17"	chr21	 25333220	 25333997	-	ENSG00000235564.1	ENST00000447405.1	AP000477.2	AP000477.2-001	NA	NA	NA	inter
CUST_5291_PI429285431	7.8478475	P	7.974081	P	0.916220342534063	0	lncRNA	5231-1_{1..571}	"transcript_id ""ENST00000560008.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560008.1"" | genecode_v17"	chr15	 89905705	 89906275	+	ENSG00000255571.2	ENST00000560008.1	CTD-2335A18.1	CTD-2335A18.1-006	NA	NA	NA	inter
CUST_48116_PI429285431	0.90517306	A	1.7429723	A	0.559496402509871	0	lncRNA	51988-1_{1..2909}	"gi|310117675|ref|XR_113275.1| PREDICTED: Homo sapiens uncharacterized LOC100130547 (LOC100130547), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310117675|ref|XR_113275.1| PREDICTED: Homo sapiens uncharacterized LOC100130547 (LOC100130547), misc_RNA"	NA	NA	NA	NA	NA	XR_113275.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_C9orf169:range=chr9:140120074-1401205085'pad=0,hg19_refFlat_C9orf169:range=chr9:140120074-1401205085'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60"	NA	Unknown
CUST_31185_PI429285431	2.063759	A	1.4327753	A	1.54862055882942	0	lncRNA	32980-1_{1..978}	n337625|AF167081|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4|NULL|0.9619700|-0.1291215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337625|AF167081|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4|NULL|0.9619700|-0.1291215	chrX	  7810302	  7811279	+	NA	NA	NA	NA	VCX	NA	chrX:7810303-7812184	inner
CUST_4298_PI429285431	4.7845545	P	5.3277187	P	0.68626410419327	0	lncRNA	4253-1_{1..545}	"transcript_id ""ENST00000540875.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000540875.1"" | genecode_v17"	chr12	 66038114	 66038658	+	ENSG00000256915.1	ENST00000540875.1	RP11-221N13.4	RP11-221N13.4-001	NA	NA	NA	inter
CUST_51986_PI429285431	2.0271888	A	1.7054725	A	1.24981650718287	0	lncRNA	55522-3_{6001..7142}	hg19_lincRNAsTranscripts_TCONS_l2_00017148 range=chr21:16190134-16254319 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017148 range=chr21:16190134-16254319 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 16196134	 16197275	-	NA	NA	NA	NA	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-13.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00"	NA	inter
CUST_9545_PI429285431	1.2048655	A	0.90498734	A	1.2310404438315	0	lncRNA	11058-1_{1..346}	lnc-GRAMD1B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRAMD1B-2:1	chr11	123545088	123545433	+	lnc-GRAMD1B-2	lnc-GRAMD1B-2:1	XLOC_009312	linc-OR8D4-1	NA	NA	NA	inter
CUST_4916_PI429285431	4.9548116	P	4.4990697	P	1.37148790568975	0	lncRNA	4858-1_{1..773}	"transcript_id ""ENST00000553760.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553760.1"" | genecode_v17"	chr14	 83108971	 83109743	+	ENSG00000258743.1	ENST00000553760.1	RP11-406A9.2	RP11-406A9.2-002	NA	NA	NA	inter
CUST_1316_PI429285431	3.2300746	A	3.6217291	P	0.762254939918269	0	lncRNA	1305-1_{1..370}	"transcript_id ""ENST00000448980.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448980.1"" | genecode_v17"	chr3	 21984058	 21984427	+	ENSG00000223351.1	ENST00000448980.1	ZNF385D-AS2	ZNF385D-AS2-001	LOC100505836	NA	chr3:21974058-22013032	inter
CUST_40212_PI429285431	0.9011446	A	0.9170088	A	0.989064011988617	0	lncRNA	41039-1_{1..3000}	n408041|NR_027822_5|lncRNA|Homosapiens||RefGeneNoncode|NR_027822_5||-1.2140400|-0.2826014	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n408041|NR_027822_5|lncRNA|Homosapiens||RefGeneNoncode|NR_027822_5||-1.2140400|-0.2826014	chr6	  1739434	  1742433	+	NA	NA	NA	NA	GMDS	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chr6:1729434-1756752"	NA	inner
CUST_6368_PI429285431	3.474096	P	3.5804853	P	0.92890998131813	0	lncRNA	6294-1_{1..493}	"transcript_id ""ENST00000598356.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598356.1"" | genecode_v17"	chr19	 17516587	 17517079	+	ENSG00000269640.1	ENST00000598356.1	CTD-2521M24.9	CTD-2521M24.9-007	BST2	NA	chr19:17513755-17516384	inter
CUST_49873_PI429285431	3.4351661	P	3.0970926	P	1.26406749639673	0	lncRNA	53624-2_{3001..3941}	hg19_lincRNAsTranscripts_TCONS_l2_00026039 range=chr7:76597089-76636346 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026039 range=chr7:76597089-76636346 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 76600089	 76601029	+	NA	NA	NA	NA	NA	"hg19_refFlat_FDPS:range=chr1:155287765-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155287765-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_FDPS:range=chr1:155279581-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155279581-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_FDPS:range=chr1:155279856-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155279856-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80"	NA	inter
CUST_12888_PI429285431	5.6165047	P	5.5739317	P	1.0299490705159	0	lncRNA	14516-1_{1..652}	lnc-PPDPF-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPDPF-1:2	chr20	 62136763	 62137414	+	lnc-PPDPF-1	lnc-PPDPF-1:2	XLOC_013614	linc-PPDPF-1	EEF1A2	NA	chr20:62126763-62130505	inter
CUST_30520_PI429285431	0.9067116	A	0.91894597	A	0.9915556365602	0	lncRNA	32300-1_{1..490}	n335678|CR616786|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000295981_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000295981_05|-1.1042300|-0.3028755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335678|CR616786|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000295981_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000295981_05|-1.1042300|-0.3028755	chr6	  1967472	  1967961	-	NA	NA	NA	NA	GMDS	NA	chr6:1957472-1977962	inner
LNCA_21_P0009734	3.42408	P	2.581257	A	1.79355625969684	0	lncRNA	BC063630	NA	BC063630	NA	Hs.541411	XLOC_013194	NA	NA	THC2599797	NA	"BROAD Institute lincRNA (XLOC_013194), lincRNA [TCONS_00027153]"	chr19:781073-781014	hs|19p13.3	Agilent_HUMAN_G3V2	BC063630	BC063630	chr19	   781014	   781073	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21804_PI429285431	0.88387114	A	2.0005534	A	0.46115311240413	0	lncRNA	23414-1_{1..418}	lnc-CRTC3-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CRTC3-2:4	chr15	 91207586	 91208003	+	lnc-CRTC3-2	lnc-CRTC3-2:4	ENSG00000245479.2	RP11-387D10.3	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
CUST_23516_PI429285431	0.89458233	A	1.2784995	A	0.766353977813734	0	lncRNA	25083-1_{1..2810}	lnc-JPH1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-JPH1-3:1	chr8	 75779100	 75781909	-	lnc-JPH1-3	lnc-JPH1-3:1	ENSG00000253706.1	RP11-758M4.4	NA	NA	NA	inter
CUST_21332_PI429285431	0.88714576	A	0.8989269	A	0.991867187752168	0	lncRNA	22955-1_{1..340}	lnc-ASTE1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASTE1-2:1	chr3	130648702	130649041	-	lnc-ASTE1-2	lnc-ASTE1-2:1	ENSG00000250592.1	RP11-39E3.3	ATP2C1	NA	chr3:130638702-130658820	inner
LNCA_21_P0008098	0.8942075	A	0.90966547	A	0.989342549056121	0	lncRNA	TCONS_00021865	NA	NA	NA	NA	XLOC_010460	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010460), lincRNA [TCONS_00021865]"	chr13:85986241-85986300	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00021865	TCONS_00021865	chr13	 85986241	 85986300	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8816_PI429285431	2.2300682	A	2.0178053	A	1.15850389926522	0	lncRNA	10355-1_{1..2549}	lnc-FGFR1OP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FGFR1OP2-1:1	chr12	 27130927	 27133475	+	lnc-FGFR1OP2-1	lnc-FGFR1OP2-1:1	ENSG00000247903	ENSG00000247903.1	TM7SF3	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chr12:27124503-27142515"	NA	inner
LNCA_19_P00316341	7.862747	P	8.227774	P	0.776454343542307	0	lncRNA	XR_108813	XR_108813	XR_108813	NA	NA	LOC100506860	NA	NA	THC2530046	NA	"PREDICTED: Homo sapiens hypothetical LOC100506860, transcript variant 1 (LOC100506860), miscRNA [XR_108813]"	chr7:130606583-130606642	hs|7q32.3	Agilent_HUMAN_G3V2	XR_108813	XR_108813	chr7	130606583	130606642	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48383_PI429285431	6.7817564	P	6.95045	P	0.889647917163452	0	lncRNA	52236-1_{1..300}	hg19_lincRNAsTranscripts_TCONS_l2_00000483 range=chr1:110956796-110958872 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000483 range=chr1:110956796-110958872 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	110956796	110957095	+	NA	NA	NA	NA	HBXIP	NA	chr1:110946796-110950546	inter
CUST_19120_PI429285431	2.1243277	A	3.9434383	P	0.283395626664131	0	lncRNA	20801-1_{1..2074}	lnc-EVX1-11:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EVX1-11:1	NA	NA	     2073	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013419	0.88847613	A	0.90176237	A	0.990832956112322	0	lncRNA	ENST00000424194	NA	NA	NA	NA	XLOC_l2_013783	NA	ENST00000424194	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013783), lincRNA [TCONS_l2_00027332]"	chr7:35803444-35803385	hs|7p14.2	Agilent_HUMAN_G3V2	ENST00000424194	ENST00000424194	chr7	 35803385	 35803444	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23466_PI429285431	3.3588798	P	3.6478505	P	0.818485804224043	0	lncRNA	25033-1_{1..353}	lnc-PLA2G3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLA2G3-1:1	chr22	 31601250	 31601602	-	lnc-PLA2G3-1	lnc-PLA2G3-1:1	ENSG00000254835.1	RNF185-AS1	RNF185	NA	chr22:31591250-31603005	inner
CUST_16506_PI429285431	0.89328367	A	0.90963507	A	0.988730060170843	0	lncRNA	18205-1_{1..495}	lnc-SSTR4-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SSTR4-4:2	chr20	 22666196	 22666690	+	lnc-SSTR4-4	lnc-SSTR4-4:2	XLOC_013486	linc-SSTR4-3	NA	NA	NA	inter
CUST_8064_PI429285431	0.91773355	A	0.8814284	A	1.02548411905769	0	lncRNA	9671-1_{1..433}	lnc-CPN2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPN2-4:1	chr3	193788611	193789043	-	lnc-CPN2-4	lnc-CPN2-4:1	ENSG00000230102	RP11-407B7.1	NA	NA	NA	inter
CUST_51231_PI429285431	0.88057065	A	1.1075159	A	0.854442166190732	0	lncRNA	54847-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008921 range=chr15:23094274-23115198 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008921 range=chr15:23094274-23115198 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 23094274	 23097273	-	NA	NA	NA	NA	NIPA1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-62.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10chr15:23084274-23086843"	NA	inter
CUST_12776_PI429285431	4.350558	P	4.866576	P	0.69929931640251	0	lncRNA	14400-1_{1..571}	lnc-TMEM18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM18-1:1	chr2	   693039	   693609	-	lnc-TMEM18-1	lnc-TMEM18-1:1	XLOC_001930	linc-TMEM18-4	NA	NA	NA	inter
CUST_4302_PI429285431	1.4893149	A	1.7909901	A	0.811309788601455	0	lncRNA	4257-1_{1..775}	"transcript_id ""ENST00000535917.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535917.1"" | genecode_v17"	chr12	 67429288	 67430062	-	ENSG00000257083.1	ENST00000535917.1	RP11-123O10.3	RP11-123O10.3-001	NA	NA	NA	inter
CUST_38719_PI429285431	11.261864	P	11.188437	P	1.0522131606973	0	lncRNA	39713-1_{1..3000}	n384194|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bin.2||-0.8418150|-0.1667305	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384194|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bin.2||-0.8418150|-0.1667305	chr22	 48939134	 48942133	-	NA	NA	NA	NA	FAM19A5	NA	chr22:48929134-48953157	inner
CUST_31617_PI429285431	0.89881337	A	0.90943044	A	0.992667820414009	0	lncRNA	33373-1_{1..1395}	n338135|AL109781|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|523|NULL|-1.0931200|-0.3970456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338135|AL109781|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|523|NULL|-1.0931200|-0.3970456	chr15	 91843162	 91844556	+	NA	NA	NA	NA	SV2B	NA	chr15:91833162-91844539	inner
CUST_27326_PI429285431	0.87790596	A	0.876285	A	1.00112419528813	0	lncRNA	28886-1_{1..667}	n324481|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041167|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041167|-1.2485100|-0.3013913	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324481|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041167|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041167|-1.2485100|-0.3013913	chr6	 72111009	 72111675	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001739	0.87656146	A	2.0771487	A	0.435098141619318	0	lncRNA	ENST00000440801	NA	NA	NA	NA	XLOC_000980	NA	ENST00000440801	THC2682438	NA	"BROAD Institute lincRNA (XLOC_000980), lincRNA [TCONS_00002452]"	chr1:118147413-118139560	hs|1p12	Agilent_HUMAN_G3V2	ENST00000440801	ENST00000440801	chr1	118139560	118147413	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41059_PI429285431	0.89245653	A	0.88795125	A	1.00312770321826	0	lncRNA	41720-1_{1..2208}	n411751|NR_045066|lncRNA|Homosapiens||RefGeneNoncode|NR_045066||3.7946600|-0.3398845	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411751|NR_045066|lncRNA|Homosapiens||RefGeneNoncode|NR_045066||3.7946600|-0.3398845	chr18	 24495594	 24497801	-	NA	NA	NA	NA	CHST9	NA	chr18:24495595-24765289	inner
CUST_32240_PI429285431	1.7672427	A	1.3694415	A	1.31749839103043	0	lncRNA	33932-1_{1..633}	n338814|BC008639|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1237|NULL|0.1373520|-0.3039634	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338814|BC008639|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1237|NULL|0.1373520|-0.3039634	chr13	 95773453	 95774085	-	NA	NA	NA	NA	ABCC4	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-22.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90chr13:95763453-95783862"	NA	inner
CUST_32024_PI429285431	1.391445	A	1.7037492	A	0.805354459829985	0	lncRNA	33745-1_{1..2005}	n338589|AK056349|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|995|NULL|1.2887600|-0.1918387	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338589|AK056349|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|995|NULL|1.2887600|-0.1918387	chr1	239549864	239551868	+	NA	NA	NA	NA	CHRM3	NA	chr1:239792373-240059896	inner
CUST_4636_PI429285431	0.9036593	A	0.91392565	A	0.992909167870735	0	lncRNA	4582-1_{1..555}	"transcript_id ""ENST00000422527.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422527.1"" | genecode_v17"	chr13	 62895438	 62895992	+	ENSG00000227611.1	ENST00000422527.1	RP11-168G22.3	RP11-168G22.3-001	NA	NA	NA	inter
CUST_42453_PI429285431	1.5231394	A	1.1231903	A	1.31946135778285	0	lncRNA	45184-1_{1..76}	ENST00000410413 ncrna:snoRNA chromosome:GRCh37:3:52725394:52725469:1 gene:ENSG00000222345 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410413 ncrna:snoRNA chromosome:GRCh37:3:52725394:52725469:1 gene:ENSG00000222345 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	 52725394	 52725469	+	ENSG00000222345	ENST00000410413	NA	NA	PBRM1	NA	chr3:52715394-52719866	inner
CUST_41016_PI429285431	1.2680019	A	0.89719474	A	1.29307607937871	0	lncRNA	41676-1_{1..2429}	n411622|NR_040090_2|lncRNA|Homosapiens||RefGeneNoncode|NR_040090_2||0.8702510|-0.1252323	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n411622|NR_040090_2|lncRNA|Homosapiens||RefGeneNoncode|NR_040090_2||0.8702510|-0.1252323	chr6	  3258995	  3261423	+	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10chr6:3269207-3272269"	NA	inner
CUST_44066_PI429285431	9.083727	P	8.385305	P	1.62272890310451	0	lncRNA	48738-1_{1..2674}	"gi|401761504|ref|NR_073116.1| Homo sapiens serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 (SERPINE2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|401761504|ref|NR_073116.1| Homo sapiens serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 (SERPINE2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_073116.1	NA	NA	NA	NA	NA	Unknown
CUST_33981_PI429285431	4.293344	P	4.602747	P	0.806975623807718	0	lncRNA	35518-1_{1..685}	n340793|BC016291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3256|NULL|-0.1593760|-0.2103076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340793|BC016291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3256|NULL|-0.1593760|-0.2103076	chr5	180688222	180688906	+	NA	NA	NA	NA	TRIM52	NA	chr5:180683373-180688119	inter
LNCA_21_P0011307	2.355795	A	1.3552985	A	2.00068841360144	0	lncRNA	AK310041	NA	AK310041	NA	Hs.672754	LOC643699	golgin subfamily A member 8-like	NA	NA	GO:0005794|GO:0016020|GO:0032580	"BROAD Institute lincRNA (XLOC_l2_004602), lincRNA [TCONS_l2_00008528]"	chr15:32888759-32888818	hs|15q13.3	Agilent_HUMAN_G3V2	AK310041	AK310041	chr15	 32888759	 32888818	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15885_PI429285431	1.123284	A	1.3478512	A	0.855851737646191	0	lncRNA	17576-1_{1..640}	lnc-CRYBA4-8:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-8:4	chr22	 27713099	 27713738	+	lnc-CRYBA4-8	lnc-CRYBA4-8:4	XLOC_014197	linc-HSCB-6	NA	NA	NA	inter
CUST_29968_PI429285431	6.86314	P	6.5743413	P	1.22162263613044	0	lncRNA	31734-1_{1..252}	n334199|S54705|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000215737|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000215737|0.4103670|-0.2484050	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334199|S54705|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000215737|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000215737|0.4103670|-0.2484050	chr17	 66508582	 66508833	+	NA	NA	NA	NA	PRKAR1A	NA	chr17:66508110-66521680	inner
LNCA_21_P0010091	6.086443	P	6.157888	P	0.95168431572184	0	lncRNA	TCONS_00028558	NA	NA	NA	NA	XLOC_013546	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013546), lincRNA [TCONS_00028558]"	chr20:46613019-46613078	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028558	TCONS_00028558	chr20	 46613019	 46613078	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16724_PI429285431	0.9107008	A	0.91772735	A	0.995141408006873	0	lncRNA	18431-1_{1..213}	lnc-PDGFD-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDGFD-3:1	chr11	103571258	103571470	-	lnc-PDGFD-3	lnc-PDGFD-3:1	XLOC_009535	linc-DCUN1D5-2	NA	NA	NA	inter
CUST_39939_PI429285431	4.181076	P	4.1624074	P	1.01302417268531	0	lncRNA	40815-3_{6001..9000}	n406883|NR_024368|lncRNA|Homosapiens||RefGeneNoncode|NR_024368||3.6335100|-0.1460730	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n406883|NR_024368|lncRNA|Homosapiens||RefGeneNoncode|NR_024368||3.6335100|-0.1460730	chr7	128287294	128290293	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-60.00;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-56.00;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80"	NA	inter
CUST_15488_PI429285431	1.5246227	A	0.8761627	A	1.56749408611732	0	lncRNA	17177-1_{1..532}	lnc-GCNT7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GCNT7-1:1	chr20	 55043176	 55043707	-	lnc-GCNT7-1	lnc-GCNT7-1:1	XLOC_013809	linc-AURKA	C20orf43	NA	chr20:55043647-55053472	inter
LNCA_21_P0006335	6.9928217	P	7.7219744	P	0.60325810548694	0	lncRNA	TCONS_00016512	NA	NA	NA	NA	XLOC_007895	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007895), lincRNA [TCONS_00016512]"	chr9:139166531-139166472	hs|9q34.3	Agilent_HUMAN_G3V2	TCONS_00016512	TCONS_00016512	chr9	139166472	139166531	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44014_PI429285431	7.027371	P	4.967497	P	4.16949887783691	0	lncRNA	48702-2_{3001..4205}	"gi|371118942|ref|NR_045772.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 11, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371118942|ref|NR_045772.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 11, non-coding RNA"	Chr2	175939978	175941182	-	1386	NR_045772.1	NA	NA	NA	NA	NA	inter
CUST_43580_PI429285431	8.513207	P	8.165019	P	1.27296080611668	0	lncRNA	48350-1_{1..2004}	"gi|303304980|ref|NR_036541.1| Homo sapiens G protein-coupled receptor 89A (GPR89A), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|303304980|ref|NR_036541.1| Homo sapiens G protein-coupled receptor 89A (GPR89A), transcript variant 3, non-coding RNA"	NW_003871055.3	  2423373	  2425376	+	653519	NR_036541.1	NA	NA	NA	NA	NA	Unknown
CUST_16939_PI429285431	0.8787246	A	0.8776416	A	1.00075096022609	0	lncRNA	18651-1_{1..465}	lnc-MRPS18A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPS18A-2:1	chr6	 43819914	 43820378	-	lnc-MRPS18A-2	lnc-MRPS18A-2:1	XLOC_005730	linc-MRPS18A-4	NA	NA	NA	inter
CUST_45380_PI429285431	0.8923392	A	0.88528454	A	1.00490189284753	0	lncRNA	49814-1_{1..3000}	"gi|341915489|ref|XR_132565.1| PREDICTED: Homo sapiens uncharacterized LOC100507137 (FP2234), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915489|ref|XR_132565.1| PREDICTED: Homo sapiens uncharacterized LOC100507137 (FP2234), misc_RNA"	NA	NA	NA	NA	NA	XR_132565.1	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.39;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10"	NA	Unknown
CUST_5867_PI429285431	4.4959087	P	4.4485745	P	1.03335373613419	0	lncRNA	5796-1_{1..562}	"transcript_id ""ENST00000585620.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585620.1"" | genecode_v17"	chr17	 42870567	 42871128	+	ENSG00000267505.1	ENST00000585620.1	CTC-296K1.3	CTC-296K1.3-001	GJC1	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30chr17:42875816-42881842"	NA	inter
CUST_42450_PI429285431	7.253419	P	7.8546524	P	0.659190154472218	0	lncRNA	45178-1_{1..135}	ENST00000459316 ncrna:snoRNA chromosome:GRCh37:18:2555357:2555491:1 gene:ENSG00000238575 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459316 ncrna:snoRNA chromosome:GRCh37:18:2555357:2555491:1 gene:ENSG00000238575 gene_biotype:snoRNA transcript_biotype:snoRNA	chr18	  2555357	  2555491	+	ENSG00000238575	ENST00000459316	NA	NA	METTL4	NA	chr18:2545357-2565491	inner
CUST_33734_PI429285431	0.88834286	A	0.8817938	A	1.00454978144238	0	lncRNA	35291-2_{3001..3687}	n340512|BX649083|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2974|NULL|-0.6643050|-0.2855473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340512|BX649083|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2974|NULL|-0.6643050|-0.2855473	chr17	 12666450	 12667136	-	NA	NA	NA	NA	MYOCD	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.91;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MYOCD:range=chr17:12569506-126669615'pad=0,hg19_refFlat_MYOCD:range=chr17:12569506-126669615'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10chr17:12653450-12670651"	NA	inner
CUST_52051_PI429285431	0.91046077	A	0.8974749	A	1.00904175107018	0	lncRNA	55584-1_{1..2222}	hg19_lincRNAsTranscripts_TCONS_l2_00017241 range=chr21:40362541-40367752 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017241 range=chr21:40362541-40367752 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 40362541	 40364762	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_107_PI429201921	4.0402865	P	4.3494124	P	0.807130635376472	0	lncRNA	109-1_{1..3000}	TC0X002158.hg.1	 TCONS_l2_00030560-XLOC_l2_015780 // Broad TUCP // linc-ARMCX2 chrX:-:101032843-101035506 // chrX // 100 // 100 // 0 // --- // 0/// TCONS_l2_00030559-XLOC_l2_015780 // Broad TUCP // linc-ARMCX2 chrX:-:101032475-101035614 // chrX // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00030558-XLOC_l2_015780 // Broad TUCP // linc-ARMCX2 chrX:-:101032468-101035606 // chrX // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chrX:-:101032468-101035606	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00030558-XLOC_l2_015780	linc-ARMCX2	chrX	101032468	101035606	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51831_PI429285431	6.4824324	P	6.550696	P	0.953785265089526	0	lncRNA	55384-1_{1..787}	hg19_lincRNAsTranscripts_TCONS_l2_00013079 range=chr19:36811497-36822633 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013079 range=chr19:36811497-36822633 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 36811497	 36812283	-	NA	NA	NA	NA	ZFP14	NA	chr19:36825355-36832633	inter
LNCA_21_P0008951	0.8787236	A	0.8822759	A	0.99754076216273	0	lncRNA	TCONS_00024426	NA	NA	NA	NA	XLOC_011743	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011743), lincRNA [TCONS_00024426]"	chr16:60529949-60530008	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024426	TCONS_00024426	chr16	 60529949	 60530008	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48999_PI429285431	1.7408798	A	1.9140326	A	0.886902365785553	0	lncRNA	52831-1_{1..1430}	hg19_lincRNAsTranscripts_TCONS_l2_00019717 range=chr3:197330065-197354456 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019717 range=chr3:197330065-197354456 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	197330065	197331494	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37397_PI429285431	0.87572604	A	0.88003093	A	0.997020525105486	0	lncRNA	38502-1_{1..1770}	n345850|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1399|NULL|-1.5519100|-0.3861278	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345850|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1399|NULL|-1.5519100|-0.3861278	chr21	 26757133	 26758902	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42535_PI429285431	2.3819408	A	1.6795902	A	1.62715377490259	0	lncRNA	45334-1_{1..71}	ENST00000584451 ncrna:snoRNA chromosome:GRCh37:11:109134221:109134291:-1 gene:ENSG00000264997 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584451 ncrna:snoRNA chromosome:GRCh37:11:109134221:109134291:-1 gene:ENSG00000264997 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	109134221	109134291	-	ENSG00000264997	ENST00000584451	NA	NA	NA	NA	NA	inter
CUST_51751_PI429285431	1.0691825	A	1.2298278	A	0.894624826584269	0	lncRNA	55303-2_{3001..3390}	hg19_lincRNAsTranscripts_TCONS_l2_00012523 range=chr19:37747982-37759148 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012523 range=chr19:37747982-37759148 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 37750982	 37751371	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
CUST_30835_PI429285431	0.8738922	A	1.1446787	A	0.828867556971658	0	lncRNA	32623-1_{1..533}	n336792|Z98739|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328387|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328387|3.8690600|-0.0681689	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336792|Z98739|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328387|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328387|3.8690600|-0.0681689	chr14	106209226	106209758	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7595_PI429285431	2.2045898	A	0.90068215	A	2.46896716485155	0	lncRNA	9231-1_{1..3000}	lnc-C16orf52-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C16orf52-1:1	chr16	 22092017	 22095016	+	lnc-C16orf52-1	lnc-C16orf52-1:1	ENSG00000185716	C16orf52	C16orf52	NA	chr16:22082017-22095975	inner
CUST_7198_PI429285431	0.88711214	A	0.9008976	A	0.990490154589679	0	lncRNA	7545-1_{1..339}	"transcript_id ""ENST00000580321.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580321.1"" | genecode_v17"	chr4	   585359	   585697	+	ENSG00000263386.1	ENST00000580321.1	RN7SL358P	RN7SL358P-201	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-21.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80"	NA	inter
CUST_22099_PI429285431	0.89018565	A	0.9013665	A	0.992279978969913	0	lncRNA	23704-1_{1..2503}	lnc-OR5P3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-OR5P3-1:1	chr11	  7927150	  7929652	-	lnc-OR5P3-1	lnc-OR5P3-1:1	ENSG00000254951.2	RP11-494M8.4	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.31;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_49672_PI429285431	1.7782133	A	0.98297083	A	1.73536900874824	0	lncRNA	53451-1_{1..2370}	hg19_lincRNAsTranscripts_TCONS_l2_00026951 range=chr7:149244260-149321823 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026951 range=chr7:149244260-149321823 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	149244260	149246629	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15257_PI429285431	1.8448402	A	1.7377225	A	1.07707424401254	0	lncRNA	16929-1_{1..204}	lnc-PRAGMIN.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRAGMIN.1-3:1	chr8	  8085785	  8085988	-	lnc-PRAGMIN.1-3	lnc-PRAGMIN.1-3:1	XLOC_006993	linc-DEFB105B-2	NA	NA	NA	inter
CUST_331_PI429285431	3.0092354	A	3.607116	A	0.660723883246655	0	lncRNA	324-1_{1..2107}	"transcript_id ""ENST00000413670.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413670.2"" | genecode_v17"	chr1	 98508908	 98511014	-	ENSG00000225206.3	ENST00000413670.2	MIR137HG	MIR137HG-004	NA	NA	NA	inter
CUST_26418_PI429285431	0.904448	A	0.92260146	A	0.987495815566937	0	lncRNA	27925-1_{1..627}	lnc-DCTN5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DCTN5-1:1	chr16	 23635221	 23635847	+	lnc-DCTN5-1	lnc-DCTN5-1:1	ENSG00000261723.1	CTD-2196E14.3	PALB2	"hg19_refFlat_PALB2:range=chr16:23614780-236524785'pad=0,hg19_refFlat_PALB2:range=chr16:23614780-236524785'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10chr16:23625221-23645428"	NA	inner
LNCA_21_P0010336	1.035758	A	2.3549213	A	0.400767298907132	0	lncRNA	ENST00000424852	XR_109724	XR_109724	NA	Hs.606521	XLOC_014388	NA	ENST00000424852	THC2605722	NA	"PREDICTED: Homo sapiens hypothetical LOC100134361, transcript variant 2 (LOC100134361), miscRNA [XR_109724]"	chr22:42760888-42760829	hs|22q13.2	Agilent_HUMAN_G3V2	ENST00000424852	ENST00000424852	chr22	 42760829	 42760888	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36013_PI429285431	5.829903	P	5.319238	P	1.42470675269451	0	lncRNA	37346-1_{1..507}	n344624|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_172|NULL|-1.3073900|-0.2053923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344624|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_172|NULL|-1.3073900|-0.2053923	chr2	112101788	112102294	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10543_PI429285431	1.0852904	A	0.92990553	A	1.11371868706857	0	lncRNA	12071-1_{1..271}	lnc-S100P-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-S100P-1:2	chr4	  6694759	  6695029	+	lnc-S100P-1	lnc-S100P-1:2	XLOC_003440	linc-S100P	S100P	NA	chr4:6695566-6698897	inter
CUST_25591_PI429285431	0.89511395	A	0.90329844	A	0.994343005228566	0	lncRNA	27121-1_{1..546}	lnc-CD96-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CD96-1:1	chr3	111261067	111261612	+	lnc-CD96-1	lnc-CD96-1:1	ENSG00000241177.1	RP11-615J4.1	CD96	NA	chr3:111260926-111271149	inner
LNCA_21_P0009973	6.3183393	P	5.777262	P	1.45505864399145	0	lncRNA	TCONS_00028216	NA	NA	NA	NA	XLOC_013562	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013562), lincRNA [TCONS_00028216]"	chr20:49012801-49012860	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028216	TCONS_00028216	chr20	 49012801	 49012860	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49079_PI429285431	0.8993234	A	0.9018159	A	0.998273822214043	0	lncRNA	52903-1_{1..944}	hg19_lincRNAsTranscripts_TCONS_l2_00021047 range=chr4:8747131-8749455 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021047 range=chr4:8747131-8749455 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  8747131	  8748074	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20884_PI429285431	10.50576	P	10.210388	P	1.22720137125625	0	lncRNA	22516-1_{1..390}	lnc-YBEY-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YBEY-1:1	chr21	 47667549	 47667938	+	lnc-YBEY-1	lnc-YBEY-1:1	ENSG00000228137.1	AP001469.7	MCM3AP	NA	chr21:47657549-47677596	inner
CUST_32239_PI429285431	0.9342667	A	0.922854	A	1.0079420529335	0	lncRNA	33931-1_{1..1294}	n338813|AF339811|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1236|NULL|-1.1211800|-0.3857455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338813|AF339811|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1236|NULL|-1.1211800|-0.3857455	chr13	 95612294	 95613587	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22021_PI429285431	3.7595801	A	2.8664088	A	1.85725421466645	0	lncRNA	23630-1_{1..523}	lnc-CTD-2523D13.1.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2523D13.1.1-1:3	chr11	119610241	119610763	+	lnc-CTD-2523D13.1.1-1	lnc-CTD-2523D13.1.1-1:3	ENSG00000254854.1	CTD-2523D13.2	NA	NA	NA	inter
CUST_36717_PI429285431	1.0336052	A	0.9108507	A	1.08881171905801	0	lncRNA	37896-1_{1..3000}	n345203|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_752|NULL|-1.3237000|-0.3622143	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345203|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_752|NULL|-1.3237000|-0.3622143	chr13	 74805584	 74808583	+	NA	NA	NA	NA	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_19451_PI429285431	0.92052174	A	1.5433551	A	0.649394306001804	0	lncRNA	21110-1_{1..441}	lnc-SEC24C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC24C-1:1	chr10	 75434331	 75434771	+	lnc-SEC24C-1	lnc-SEC24C-1:1	ENSG00000234606.1	RP11-464F9.19	AGAP5	"hg19_refFlat_AGAP9:range=chr10:48215836-482372105'pad=0,hg19_refFlat_AGAP9:range=chr10:48215836-482372105'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_AGAP7:range=chr10:51464464-514862015'pad=0,hg19_refFlat_AGAP7:range=chr10:51464464-514862015'pad=0 3'pad=0 strand=- repeatMasking=none,-98.60;hg19_refFlat_AGAP4:range=chr10:46321363-463427955'pad=0,hg19_refFlat_AGAP4:range=chr10:46321363-463427955'pad=0 3'pad=0 strand=- repeatMasking=none,-98.60;hg19_refFlat_AGAP11:range=chr10:88761480-887696625'pad=0,hg19_refFlat_AGAP11:range=chr10:88761480-887696625'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.60;hg19_refFlat_AGAP6:range=chr10:51748476-517699465'pad=0,hg19_refFlat_AGAP6:range=chr10:51748476-517699465'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.60;hg19_refFlat_AGAP1:range=chr2:236403331-2370327665'pad=0,hg19_refFlat_AGAP1:range=chr2:236403331-2370327665'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_AGAP8:range=chr10:51224990-512464095'pad=0,hg19_refFlat_AGAP8:range=chr10:51224990-512464095'pad=0 3'pad=0 strand=- repeatMasking=none,-98.60;hg19_refFlat_AGAP5:range=chr10:75434357-754575135'pad=0,hg19_refFlat_AGAP5:range=chr10:75434357-754575135'pad=0 3'pad=0 strand=- repeatMasking=none,-98.60;hg19_refFlat_SYNPO2L:range=chr10:75406476-754156805'pad=0,hg19_refFlat_SYNPO2L:range=chr10:75406476-754156805'pad=0 3'pad=0 strand=- repeatMasking=none,-97.00;hg19_refFlat_AGAP9:range=chr10:47192142-472135145'pad=0,hg19_refFlat_AGAP9:range=chr10:47192142-472135145'pad=0 3'pad=0 strand=- repeatMasking=none,-92.90chr10:75434033-75444477"	NA	inner
CUST_24322_PI429285431	3.622741	P	3.1931427	P	1.34685850910942	0	lncRNA	25875-1_{1..734}	lnc-ODZ2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ODZ2-2:1	chr5	165204982	165205715	+	lnc-ODZ2-2	lnc-ODZ2-2:1	ENSG00000253693.1	CTC-535M15.2	NA	NA	NA	inter
CUST_22793_PI429285431	2.098502	A	1.6312089	A	1.38251305133962	0	lncRNA	24373-1_{1..187}	lnc-TP53I13-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TP53I13-2:1	chr17	 28034075	 28034261	+	lnc-TP53I13-2	lnc-TP53I13-2:1	ENSG00000264031.1	RP11-68I3.2	SSH2	NA	chr17:28024075-28044108	inner
CUST_16814_PI429285431	0.91951597	A	0.93188024	A	0.991466361089633	0	lncRNA	18521-1_{1..652}	lnc-TM9SF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TM9SF2-1:1	chr13	100232423	100233074	+	lnc-TM9SF2-1	lnc-TM9SF2-1:1	XLOC_010479	linc-CLYBL	NA	NA	NA	inter
CUST_1869_PI429285431	0.8970811	A	1.2913538	A	0.76087285569847	0	lncRNA	1859-1_{1..584}	"transcript_id ""ENST00000508291.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508291.1"" | genecode_v17"	chr4	124426434	124427017	+	ENSG00000251526.1	ENST00000508291.1	RP11-381N20.1	RP11-381N20.1-001	NA	NA	NA	inter
CUST_47537_PI429285431	8.285818	P	8.286958	P	0.999210124330315	0	lncRNA	51547-1_{1..2950}	"gi|410170769|ref|XR_109736.3| PREDICTED: Homo sapiens uncharacterized LOC100506813 (LOC100506813), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410170769|ref|XR_109736.3| PREDICTED: Homo sapiens uncharacterized LOC100506813 (LOC100506813), misc_RNA"	NA	NA	NA	NA	NA	XR_109736.3	NA	NA	NA	NA	NA	Unknown
CUST_31628_PI429285431	0.89185363	A	0.90450406	A	0.991269722250631	0	lncRNA	33382-2_{3001..3496}	n338150|AK125592|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|539|NULL|-1.2643700|-0.3443037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338150|AK125592|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|539|NULL|-1.2643700|-0.3443037	chr15	 95826981	 95827476	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007447	0.8822648	A	0.8916925	A	0.993486521590975	0	lncRNA	TCONS_00019977	NA	NA	NA	NA	XLOC_009254	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009254), lincRNA [TCONS_00019977]"	chr11:94475309-94475368	hs|11q21	Agilent_HUMAN_G3V2	TCONS_00019977	TCONS_00019977	chr11	 94475309	 94475368	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_444_PI429285431	0.9133171	A	0.9183424	A	0.996522787029542	0	lncRNA	436-1_{1..678}	"transcript_id ""ENST00000434245.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434245.1"" | genecode_v17"	chr1	147762995	147763672	-	ENSG00000231196.2	ENST00000434245.1	RP11-495P10.8	RP11-495P10.8-001	NA	NA	NA	inter
CUST_7318_PI429285431	1.5270351	A	2.0134509	A	0.71379623655386	0	lncRNA	8542-1_{1..275}	"transcript_id ""ENST00000488309.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000488309.2"" | genecode_v17"	chr15	102313442	102313716	-	ENSG00000240927.2	ENST00000488309.2	RN7SL209P	RN7SL209P-201	NA	NA	NA	inter
CUST_35750_PI429285431	0.8959739	A	0.8976648	A	0.998828644006024	0	lncRNA	37169-1_{1..261}	n342926|CR621840|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5435|NULL|-1.4243100|-0.2904050	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342926|CR621840|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5435|NULL|-1.4243100|-0.2904050	chr6	157820189	157820449	+	NA	NA	NA	NA	ZDHHC14	NA	chr6:157810189-157830450	inner
CUST_10745_PI429285431	4.9939528	P	4.8256636	P	1.12372514033473	0	lncRNA	12281-1_{1..794}	lnc-AC012313.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC012313.1-1:4	chr19	 58919494	 58920287	-	lnc-AC012313.1-1	lnc-AC012313.1-1:4	XLOC_013429	linc-ZNF837	ZNF584	NA	chr19:58920063-58929694	inter
CUST_13557_PI429285431	6.5498133	P	6.6381903	P	0.9405802862604	0	lncRNA	15198-1_{1..300}	lnc-KLHL25-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL25-9:1	chr15	 85873309	 85873608	-	lnc-KLHL25-9	lnc-KLHL25-9:1	XLOC_011559	linc-SEC11A-5	NA	NA	NA	inter
CUST_23867_PI429285431	0.89351475	A	0.90577316	A	0.991539114150247	0	lncRNA	25428-2_{3001..6000}	lnc-SETD6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SETD6-2:1	chr16	 60084759	 60087758	+	lnc-SETD6-2	lnc-SETD6-2:1	ENSG00000261807.1	RP11-430C1.1	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70"	NA	inter
CUST_21478_PI429285431	0.8913398	A	1.5103787	A	0.651104538539224	0	lncRNA	23096-1_{1..723}	lnc-NBPF3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NBPF3-4:1	chr1	 21593341	 21594063	+	lnc-NBPF3-4	lnc-NBPF3-4:1	ENSG00000236936.1	RP3-329E20.2	ECE1	NA	chr1:21583341-21603744	inner
CUST_23778_PI429285431	5.561572	P	5.889582	P	0.796634574416353	0	lncRNA	25343-1_{1..258}	lnc-DZANK1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DZANK1-2:1	chr20	 18295697	 18295954	-	lnc-DZANK1-2	lnc-DZANK1-2:1	ENSG00000237259.1	RP4-568F9.3	ZNF133	"hg19_refFlat_ZNF133:range=chr20:18286331-182974605'pad=0,hg19_refFlat_ZNF133:range=chr20:18286331-182974605'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10chr20:18285697-18297640"	NA	inner
LNCA_21_P0001342	0.8778818	A	2.032263	A	0.449258840988734	0	lncRNA	TCONS_00001036	NA	NA	NA	NA	XLOC_000301	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000301), lincRNA [TCONS_00001036]"	chr1:94800322-94808287	hs|1p21.3	Agilent_HUMAN_G3V2	TCONS_00001036	TCONS_00001036	chr1	 94800322	 94808287	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47881_PI429285431	0.88950545	A	0.9005578	A	0.99236836470105	0	lncRNA	51776-1_{1..464}	"gi|410171559|ref|XR_171248.1| PREDICTED: Homo sapiens uncharacterized LOC100509303, transcript variant 1 (LOC100509303), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171559|ref|XR_171248.1| PREDICTED: Homo sapiens uncharacterized LOC100509303, transcript variant 1 (LOC100509303), misc_RNA"	NA	NA	NA	NA	NA	XR_171248.1	NA	NA	NA	NA	NA	Unknown
CUST_46706_PI429285431	4.306899	P	4.7125645	P	0.754887990588545	0	lncRNA	50865-1_{1..2947}	"gi|115430067|ref|NR_003227.1| Homo sapiens AFG3 ATPase family gene 3-like 1 (S. cerevisiae), pseudogene (AFG3L1P), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|115430067|ref|NR_003227.1| Homo sapiens AFG3 ATPase family gene 3-like 1 (S. cerevisiae), pseudogene (AFG3L1P), transcript variant 2, non-coding RNA"	Chr16	 90038988	 90041934	+	172	NR_003227.1	NA	NA	NA	NA	NA	inter
CUST_13434_PI429285431	2.766464	A	2.514541	A	1.19079329225287	0	lncRNA	15073-1_{1..212}	lnc-PELI2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PELI2-1:1	chr14	 56777422	 56777633	+	lnc-PELI2-1	lnc-PELI2-1:1	XLOC_010839	linc-C14orf101-5	PELI2	NA	chr14:56767422-56768031	inter
CUST_10341_PI429285431	0.9135006	A	0.8977018	A	1.01101107418856	0	lncRNA	11870-1_{1..258}	lnc-MFSD8-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MFSD8-4:2	chr4	128016259	128016516	-	lnc-MFSD8-4	lnc-MFSD8-4:2	XLOC_004067	linc-ANKRD50-5	NA	NA	NA	inter
CUST_11966_PI429285431	0.8825714	A	0.8811524	A	1.00098405971857	0	lncRNA	13544-1_{1..581}	lnc-MTERF-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTERF-4:1	chr7	 90997469	 90998049	-	lnc-MTERF-4	lnc-MTERF-4:1	XLOC_006520	linc-MGC26647-3	NA	NA	NA	inter
CUST_45873_PI429285431	10.192161	P	10.251746	P	0.959540097172899	0	lncRNA	50199-1_{1..1129}	"gi|218505718|ref|NR_024596.1| Homo sapiens chromosome 11 open reading frame 73 (C11orf73), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|218505718|ref|NR_024596.1| Homo sapiens chromosome 11 open reading frame 73 (C11orf73), transcript variant 2, non-coding RNA"	Chr11	 86014398	 86015526	+	51501	NR_024596.1	NA	NA	NA	NA	NA	inter
CUST_8540_PI429285431	0.89212227	A	0.9062084	A	0.990283749469158	0	lncRNA	10099-1_{1..1989}	lnc-CXorf28-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CXorf28-3:1	chrX	  3807740	  3809728	+	lnc-CXorf28-3	lnc-CXorf28-3:1	ENSG00000249724	ENST00000504428	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
LNCA_21_P0001508	0.8802041	A	1.421916	A	0.686955285036775	0	lncRNA	TCONS_00001501	NA	NA	NA	NA	XLOC_000844	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000844), lincRNA [TCONS_00001501]"	chr1:56702088-56702029	hs|1p32.2	Agilent_HUMAN_G3V2	TCONS_00001501	TCONS_00001501	chr1	 56702029	 56702088	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5664_PI429285431	6.571765	P	6.753893	P	0.88140195395423	0	lncRNA	5590-1_{1..504}	"transcript_id ""ENST00000565374.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565374.1"" | genecode_v17"	chr16	 82587654	 82588157	-	ENSG00000261176.1	ENST00000565374.1	RP11-2L4.1	RP11-2L4.1-001	NA	NA	NA	inter
CUST_44496_PI429285431	3.667478	P	3.807354	P	0.907597160168014	0	lncRNA	49096-1_{1..2646}	"gi|385719179|ref|NR_047668.1| Homo sapiens family with sequence similarity 173, member B (FAM173B), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385719179|ref|NR_047668.1| Homo sapiens family with sequence similarity 173, member B (FAM173B), transcript variant 4, non-coding RNA"	Chr5	 10225619	 10228264	-	134145	NR_047668.1	NA	NA	NA	NA	NA	inter
CUST_48051_PI429285431	9.156492	P	7.9760356	P	2.2664846649926	0	lncRNA	51929-2_{3001..4621}	"gi|410169993|ref|XR_172440.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410169993|ref|XR_172440.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	XR_172440.1	NA	NA	NA	NA	NA	Unknown
CUST_51668_PI429285431	7.927781	P	7.9785833	P	0.965399309492861	0	lncRNA	55234-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00011427 range=chr17:66116838-66132517 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011427 range=chr17:66116838-66132517 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 66116838	 66119837	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50"	NA	inter
CUST_50653_PI429285431	0.95415896	A	0.92802703	A	1.01827831390987	0	lncRNA	54330-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00002974 range=chr10:37591922-37600067 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002974 range=chr10:37591922-37600067 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 37594922	 37597921	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51062_PI429285431	1.683593	A	2.100459	A	0.749050037038609	0	lncRNA	54700-1_{1..2088}	hg19_lincRNAsTranscripts_TCONS_l2_00007498 range=chr13:25498812-25501871 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007498 range=chr13:25498812-25501871 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 25498812	 25500899	-	NA	NA	NA	NA	CENPJ	NA	chr13:25488812-25497085	inter
CUST_51998_PI429285431	0.8779105	A	0.87853944	A	0.999564147023775	0	lncRNA	55532-4_{9001..10613}	hg19_lincRNAsTranscripts_TCONS_l2_00017125 range=chr21:10186569-10215575 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017125 range=chr21:10186569-10215575 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 10195569	 10197181	-	NA	NA	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.74;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80"	NA	inter
LNCA_21_P0004246	1.100333	A	1.2329004	A	0.912206654669567	0	lncRNA	TCONS_00009943	NA	NA	NA	NA	XLOC_004366	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004366), lincRNA [TCONS_00009943]"	chr5:43082098-43082157	hs|5p12	Agilent_HUMAN_G3V2	TCONS_00009943	TCONS_00009943	chr5	 43082098	 43082157	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28823_PI429285431	1.0795991	A	0.88949484	A	1.14084615901778	0	lncRNA	30532-1_{1..1586}	n326237|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000095287|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000095287|-0.1242960|-0.3757590	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326237|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000095287|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000095287|-0.1242960|-0.3757590	chr1	216132865	216134450	+	NA	NA	NA	NA	USH2A	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10chr1:216122865-216170769"	NA	inner
CUST_39521_PI429285431	1.2614923	A	0.9173576	A	1.26938939947224	0	lncRNA	40467-1_{1..719}	n387338|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011cnr.1||1.2885500|-0.3210213	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387338|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011cnr.1||1.2885500|-0.3210213	chr5	 22142460	 22143178	+	NA	NA	NA	NA	CDH12	NA	chr5:22132460-22162370	inner
CUST_29098_PI429285431	0.89035285	A	0.90695024	A	0.988561488874351	0	lncRNA	30831-1_{1..623}	n326594|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023103|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023103|-1.4076100|-0.3609459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326594|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000023103|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000023103|-1.4076100|-0.3609459	chr1	 59294902	 59295524	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10838_PI429285431	5.3846316	P	5.0432286	P	1.26698812262208	0	lncRNA	12374-1_{1..254}	lnc-UGGT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UGGT2-1:1	chr13	 96739249	 96739502	-	lnc-UGGT2-1	lnc-UGGT2-1:1	XLOC_010699	linc-UGGT2	HS6ST3	NA	chr13:96743093-96749285	inter
CUST_23956_PI429285431	4.0742526	P	4.1053576	P	0.978670419727944	0	lncRNA	25512-1_{1..1839}	lnc-MRPL32-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-MRPL32-1:1	chr7	 43202525	 43204363	+	lnc-MRPL32-1	lnc-MRPL32-1:1	ENSG00000181211.1	HECW1-IT1	HECW1	NA	chr7:43192525-43212786	inner
CUST_15243_PI429285431	2.9543023	A	3.16822	A	0.86219272827228	0	lncRNA	16914-1_{1..3000}	lnc-LCLAT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-LCLAT1-1:1	chr2	 30916445	 30919444	+	lnc-LCLAT1-1	lnc-LCLAT1-1:1	XLOC_001413	linc-EHD3-2	NA	NA	NA	inter
CUST_32605_PI429285431	0.9044609	A	0.9264031	A	0.984905901283585	0	lncRNA	34265-1_{1..1245}	n339225|BC038567|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1657|NULL|4.3918200|-0.1811456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339225|BC038567|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1657|NULL|4.3918200|-0.1811456	chr2	242749406	242750650	-	NA	NA	NA	NA	GAL3ST2	NA	chr2:242739406-242743702	inner
CUST_9675_PI429285431	0.88741934	A	0.8938879	A	0.995526372489841	0	lncRNA	11192-1_{1..477}	lnc-RP11-62N21.1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RP11-62N21.1.1-4:1	chr4	133909583	133910059	-	lnc-RP11-62N21.1.1-4	lnc-RP11-62N21.1.1-4:1	XLOC_004080	linc-SCLT1-3	NA	NA	NA	inter
LNCA_21_P0003198	2.445838	A	0.9268001	A	2.86599859033738	0	lncRNA	TCONS_00006725	NA	NA	NA	NA	XLOC_003358	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003358), lincRNA [TCONS_00006725]"	chr3:186184270-186184211	hs|3q27.3	Agilent_HUMAN_G3V2	TCONS_00006725	TCONS_00006725	chr3	186184211	186184270	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1332_PI429285431	0.91448843	A	0.94236076	A	0.980865800984794	0	lncRNA	1321-1_{1..502}	"transcript_id ""ENST00000605502.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605502.1"" | genecode_v17"	chr3	 33835136	 33835637	-	ENSG00000271324.1	ENST00000605502.1	RP11-10C24.2	RP11-10C24.2-001	PDCD6IP	NA	chr3:33840066-33845637	inter
CUST_37195_PI429285431	0.8945582	A	0.90093476	A	0.995589858773505	0	lncRNA	38307-1_{1..1071}	n345626|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1175|NULL|-1.5060100|-0.3311443	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345626|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1175|NULL|-1.5060100|-0.3311443	chr4	  9807329	  9808399	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17960_PI429285431	2.7609334	A	2.719498	A	1.02913725082726	0	lncRNA	19693-1_{1..1651}	lnc-KCNMB1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNMB1-3:5	chr5	170173915	170175565	-	lnc-KCNMB1-3	lnc-KCNMB1-3:5	XLOC_005079	linc-KCNMB1-1	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80"	NA	inter
CUST_38751_PI429285431	2.9943151	A	2.7619681	A	1.17474448921459	0	lncRNA	39742-1_{1..2797}	n384299|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ebs.2||-1.2521600|-0.3504875	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384299|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ebs.2||-1.2521600|-0.3504875	chr3	115521221	115524017	-	NA	NA	NA	NA	LSAMP	NA	chr3:115521210-115534018	inner
LNCA_21_P0002600	0.90002656	A	0.91842306	A	0.987329473573815	0	lncRNA	TCONS_00004835	NA	NA	NA	NA	XLOC_001556	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001556), lincRNA [TCONS_00004835]"	chr2:85943077-85943136	hs|2p11.2	Agilent_HUMAN_G3V2	TCONS_00004835	TCONS_00004835	chr2	 85943077	 85943136	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013076	0.8995679	A	0.917654	A	0.987541923212105	0	lncRNA	TCONS_l2_00024691	NA	NA	NA	NA	XLOC_l2_012940	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012940), lincRNA [TCONS_l2_00024691]"	chr6:29113955-29113896	hs|6p22.1	Agilent_HUMAN_G3V2	TCONS_l2_00024691	TCONS_l2_00024691	chr6	 29113896	 29113955	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003814	2.1529236	A	0.9169173	A	2.35545586503633	0	lncRNA	TCONS_00008692	NA	NA	NA	NA	XLOC_004205	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004205), lincRNA [TCONS_00008692]"	chr4:185300090-185300031	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00008692	TCONS_00008692	chr4	185300031	185300090	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006061	0.8985958	A	0.9161596	A	0.987899508501883	0	lncRNA	ENST00000417054	NA	NA	NA	NA	XLOC_007603	NA	ENST00000417054	NA	NA	"BROAD Institute lincRNA (XLOC_007603), lincRNA [TCONS_00015773]"	chr9:137834957-137835016	hs|9q34.3	Agilent_HUMAN_G3V2	ENST00000417054	ENST00000417054	chr9	137834957	137835016	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21397_PI429285431	1.7538062	A	0.8982405	A	1.80946813266427	0	lncRNA	23018-2_{3001..4034}	lnc-GGCT-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GGCT-1:11	chr7	 30637327	 30638360	-	lnc-GGCT-1	lnc-GGCT-1:11	ENSG00000196295.5	AC005154.6	GARS	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr7:30634181-30644359"	NA	inner
LNCA_21_P0003604	0.89587164	A	0.9121616	A	0.988772168077726	0	lncRNA	TCONS_00008057	NA	NA	NA	NA	XLOC_003522	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003522), lincRNA [TCONS_00008057]"	chr4:41980349-41980408	hs|4p13	Agilent_HUMAN_G3V2	TCONS_00008057	TCONS_00008057	chr4	 41980349	 41980408	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45083_PI429285431	1.3445134	A	1.1819627	A	1.1192642607507	0	lncRNA	49567-1_{1..989}	"gi|396941685|ref|NR_073059.1| Homo sapiens chromosome 7 open reading frame 55 (C7orf55), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|396941685|ref|NR_073059.1| Homo sapiens chromosome 7 open reading frame 55 (C7orf55), transcript variant 3, non-coding RNA"	Chr7	139025196	139026184	+	154791	NR_073059.1	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.12;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-26.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00"	NA	inter
CUST_22927_PI429285431	1.0835539	A	0.92102104	A	1.11925042029906	0	lncRNA	24503-1_{1..479}	lnc-COMMD10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COMMD10-2:1	chr5	115785324	115785802	+	lnc-COMMD10-2	lnc-COMMD10-2:1	ENSG00000248445.1	CTB-118N6.3	SEMA6A	"hg19_refFlat_SEMA6A:range=chr5:115782309-1158406405'pad=0,hg19_refFlat_SEMA6A:range=chr5:115782309-1158406405'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50chr5:115779251-115795557"	NA	inner
CUST_27645_PI429285431	0.8951822	A	0.89040726	A	1.00331521942287	0	lncRNA	29223-1_{1..479}	n324851|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171141|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171141|-1.3740100|-0.4350744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324851|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171141|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171141|-1.3740100|-0.4350744	chr21	 25349718	 25350196	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3809_PI429285431	0.9035115	A	0.89716643	A	1.00440775307354	0	lncRNA	3777-1_{1..344}	"transcript_id ""ENST00000433085.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433085.1"" | genecode_v17"	chr10	116754416	116754759	+	ENSG00000236799.1	ENST00000433085.1	RP11-383C6.2	RP11-383C6.2-001	NA	NA	NA	inter
CUST_135_PI429201921	0.8787267	A	0.8862736	A	0.99478254598514	0	lncRNA	123-1_{1..3000}	TC0Y000236.hg.1	TCONS_00017570-XLOC_008280 // Rinn lincRNAs // linc-TBL1Y-2 chrY:+:6311474-6315116 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:+:6311474-6315116	NA	Affy_HUMAN_HTA2.0	TCONS_00017570-XLOC_008280	linc-TBL1Y-2	chrY	  6311474	  6315116	+	NA	NA	NA	NA	VWA1	NA	chr1:1370903-1378262	Unknown
CUST_16374_PI429285431	8.274614	P	8.385693	P	0.925895320382412	0	lncRNA	18072-1_{1..858}	lnc-SUMF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SUMF1-1:1	chr3	  4534468	  4535325	-	lnc-SUMF1-1	lnc-SUMF1-1:1	XLOC_003021	linc-SUMF1-4	ITPR1	NA	chr3:4535032-4544847	inter
LNCA_21_P0007500	4.291828	P	4.141598	P	1.10974637800776	0	lncRNA	TCONS_00020230	NA	NA	NA	NA	XLOC_009631	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009631), lincRNA [TCONS_00020230]"	chr12:6307167-6307226	hs|12p13.31	Agilent_HUMAN_G3V2	TCONS_00020230	TCONS_00020230	chr12	  6307167	  6307226	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26080_PI429285431	0.8972964	A	0.90719336	A	0.993163426508506	0	lncRNA	27593-1_{1..349}	lnc-RP11-677C1.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-677C1.2.1-1:1	chr12	 29682802	 29683150	+	lnc-RP11-677C1.2.1-1	lnc-RP11-677C1.2.1-1:1	ENSG00000257456.1	RP11-310I24.1	TMTC1	NA	chr12:29672802-29692907	inner
CUST_27792_PI429285431	6.2590156	P	6.4236674	P	0.892143815780895	0	lncRNA	29378-1_{1..468}	n325020|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078389|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078389|-0.9322000|-0.2502418	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325020|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078389|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078389|-0.9322000|-0.2502418	chr20	 25071875	 25072342	-	NA	NA	NA	NA	VSX1	NA	chr20:25061875-25062767	inter
CUST_19050_PI429285431	0.8950298	A	1.3416964	A	0.733736215461391	0	lncRNA	20740-1_{1..570}	lnc-RASA1-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASA1-3:10	chr5	 87588385	 87588954	+	lnc-RASA1-3	lnc-RASA1-3:10	ENSG00000247828	CTC-358I24.1	NA	NA	NA	inter
CUST_170_PI429201921	1.109895	A	1.1019545	A	1.00551910966552	0	lncRNA	143-2_{3001..4313}	TC15002594.hg.1	 TCONS_00023714-XLOC_011515 // Rinn lincRNAs // linc-ITGA11 chr15:-:68775552-68778965 // chr15 // 100 // 100 // 0 // --- // 0 ///TCONS_00024147-XLOC_011515 // Rinn lincRNAs // linc-ITGA11 chr15:-:68775546-68777423 // chr15 // 100 // 100 // 0 // --- // 0 /// TCONS_00024148-XLOC_011515 // Rinn lincRNAs // linc-ITGA11 chr15:-:68776650-68779860 // chr15 // 100 // 100 // 0 // --- // 0/// TCONS_00023717-XLOC_011515 // Rinn lincRNAs // linc-ITGA11 chr15:-:68775552-68779811 // chr15 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr15:-:68775546-68777423	NA	Affy_HUMAN_HTA2.0	TCONS_00024147-XLOC_011515	linc-ITGA11	chr15	 68775546	 68777423	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2225_PI429285431	1.066805	A	0.9135434	A	1.11208078984554	0	lncRNA	2217-1_{1..698}	"transcript_id ""ENST00000504046.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504046.1"" | genecode_v17"	chr5	 85144320	 85145017	+	ENSG00000249153.1	ENST00000504046.1	CTD-2036A18.2	CTD-2036A18.2-001	NA	NA	NA	inter
CUST_5428_PI429285431	0.878213	A	0.97367924	A	0.935969718465499	0	lncRNA	5362-1_{1..470}	"transcript_id ""ENST00000574028.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000574028.1"" | genecode_v17"	chr16	 11913805	 11914274	-	ENSG00000262117.1	ENST00000574028.1	BCAR4	BCAR4-006	RSL1D1	NA	chr16:11928053-11932675	inter
CUST_21036_PI429285431	0.8843993	A	0.8805496	A	1.0026719720723	0	lncRNA	22663-2_{3001..3676}	lnc-CTSL2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-CTSL2-4:1	chr9	 99986312	 99986987	-	lnc-CTSL2-4	lnc-CTSL2-4:1	ENSG00000159712.9	ANKRD18CP	NA	NA	NA	inter
CUST_43584_PI429285431	5.2516184	P	5.2060885	P	1.03206218478247	0	lncRNA	48352-4_{9001..12000}	"gi|387942412|ref|NR_049745.1| Homo sapiens HYDIN2, axonemal central pair apparatus protein (pseudogene) (HYDIN2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387942412|ref|NR_049745.1| Homo sapiens HYDIN2, axonemal central pair apparatus protein (pseudogene) (HYDIN2), non-coding RNA"	NA	NA	NA	NA	NA	NR_049745.1	NA	NA	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-59.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20"	NA	Unknown
LNCA_21_P0014491	1.6382176	A	0.8806145	A	1.69067938776672	0	lncRNA	XR_110077	XR_110077	XR_110077	NA	Hs.679609	LOC100507546	uncharacterized LOC100507546	ENST00000502812	THC2534146	NA	"PREDICTED: Homo sapiens hypothetical LOC100507546, transcript variant 1 (LOC100507546), miscRNA [XR_110077]"	chr5:180629915-180629974	hs|5q35.3	Agilent_HUMAN_G3V2	XR_110077	XR_110077	chr5	180629915	180629974	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22088_PI429285431	0.87538135	A	0.87671435	A	0.999076461532715	0	lncRNA	23693-1_{1..565}	lnc-TFEC-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TFEC-6:1	chr7	114871237	114871801	-	lnc-TFEC-6	lnc-TFEC-6:1	ENSG00000233607.1	AC068610.5	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30"	NA	inter
CUST_3114_PI429285431	4.5949583	P	4.0711794	P	1.43771617899693	0	lncRNA	3093-1_{1..569}	"transcript_id ""ENST00000518943.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518943.1"" | genecode_v17"	chr8	 57432946	 57433514	-	ENSG00000246430.2	ENST00000518943.1	RP11-16M8.2	RP11-16M8.2-004	NA	NA	NA	inter
CUST_16095_PI429285431	2.850851	A	3.288377	A	0.738399765537232	0	lncRNA	17800-1_{1..865}	lnc-RP11-305M3.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-305M3.3.1-1:1	chr7	129171403	129172267	+	lnc-RP11-305M3.3.1-1	lnc-RP11-305M3.3.1-1:1	XLOC_006244	linc-NRF1	NA	NA	NA	inter
CUST_1697_PI429285431	10.09388	P	11.572902	P	0.358731913221653	0	lncRNA	1680-1_{1..541}	"transcript_id ""ENST00000515691.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515691.1"" | genecode_v17"	chr4	 12225075	 12225615	+	ENSG00000251210.1	ENST00000515691.1	RP11-168E17.1	RP11-168E17.1-002	NA	NA	NA	inter
CUST_43634_PI429285431	4.2066545	P	3.328597	P	1.83789901673336	0	lncRNA	48393-1_{1..2240}	"gi|221554545|ref|NR_026678.1| Homo sapiens transmembrane protein 79 (TMEM79), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|221554545|ref|NR_026678.1| Homo sapiens transmembrane protein 79 (TMEM79), transcript variant 2, non-coding RNA"	Chr1	156252704	156254943	+	84283	NR_026678.1	NA	NA	NA	NA	NA	inter
CUST_4950_PI429285431	4.607	P	4.720935	P	0.924064204821337	0	lncRNA	4894-1_{1..2026}	"transcript_id ""ENST00000419459.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419459.1"" | genecode_v17"	chr14	 90921615	 90923640	+	ENSG00000233208.1	ENST00000419459.1	LINC00642	LINC00642-001	NA	NA	NA	inter
CUST_3332_PI429285431	2.1825976	A	1.0344211	A	2.21633582672742	0	lncRNA	3311-1_{1..439}	"transcript_id ""ENST00000517345.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517345.1"" | genecode_v17"	chr8	137549219	137549657	+	ENSG00000254101.1	ENST00000517345.1	RP11-30J20.1	RP11-30J20.1-003	NA	NA	NA	inter
CUST_20113_PI429285431	5.336981	P	3.8133793	P	2.87507920274677	0	lncRNA	21761-1_{1..970}	lnc-BLID-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BLID-1:7	chr11	121972155	121973124	-	lnc-BLID-1	lnc-BLID-1:7	ENSG00000255248.2	RP11-166D19.1	NA	NA	NA	inter
CUST_2616_PI429285431	0.87932295	A	1.1576304	A	0.824557809936317	0	lncRNA	2603-1_{1..402}	"transcript_id ""ENST00000435802.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435802.1"" | genecode_v17"	chr6	114844615	114845016	-	ENSG00000226079.1	ENST00000435802.1	RP3-399L15.2	RP3-399L15.2-001	NA	NA	NA	inter
CUST_44321_PI429285431	6.614186	P	6.8520927	P	0.847974801926263	0	lncRNA	48953-1_{1..1022}	"gi|325974487|ref|NR_037950.1| Homo sapiens TM4SF19-TCTEX1D2 readthrough (TM4SF19-TCTEX1D2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|325974487|ref|NR_037950.1| Homo sapiens TM4SF19-TCTEX1D2 readthrough (TM4SF19-TCTEX1D2), non-coding RNA"	Chr3	196042956	196043977	-	100534611	NR_037950.1	NA	NA	NA	NA	NA	inter
CUST_45812_PI429285431	0.900369	A	1.6322204	A	0.602130707890803	0	lncRNA	50148-2_{3001..3522}	"gi|387849355|ref|NR_049731.1| Homo sapiens membrane-spanning 4-domains, subfamily A, member 14 (MS4A14), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387849355|ref|NR_049731.1| Homo sapiens membrane-spanning 4-domains, subfamily A, member 14 (MS4A14), transcript variant 5, non-coding RNA"	Chr11	 60166487	 60167008	+	84689	NR_049731.1	NA	NA	NA	NA	NA	inter
CUST_11513_PI429285431	0.8846911	A	0.8928779	A	0.994341413117664	0	lncRNA	13083-1_{1..605}	lnc-DTWD2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DTWD2-3:1	chr5	117897616	117898220	-	lnc-DTWD2-3	lnc-DTWD2-3:1	XLOC_004965	linc-SEMA6A-2	NA	NA	NA	inter
CUST_43292_PI429285431	1.2521359	A	0.8812005	A	1.29319102497839	0	lncRNA	48110-1_{1..905}	ENST00000603952 havana:sense_intronic chromosome:GRCh37:X:73229224:73231303:-1 gene:ENSG00000270223 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000603952 havana:sense_intronic chromosome:GRCh37:X:73229224:73231303:-1 gene:ENSG00000270223 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chrX	 73229224	 73230128	-	ENSG00000270223	ENST00000603952	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20"	NA	inter
CUST_44067_PI429285431	1.0540721	A	0.887554	A	1.12234646472853	0	lncRNA	48739-1_{1..925}	"gi|410170448|ref|XR_108433.3| PREDICTED: Homo sapiens uncharacterized LOC654841 (LOC654841), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170448|ref|XR_108433.3| PREDICTED: Homo sapiens uncharacterized LOC654841 (LOC654841), misc_RNA"	NA	NA	NA	NA	NA	XR_108433.3	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005046	0.87973285	A	0.88117737	A	0.998999236133245	0	lncRNA	TCONS_00012235	NA	NA	NA	NA	XLOC_005792	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005792), lincRNA [TCONS_00012235]"	chr6:104785487-104785428	hs|6q16.3	Agilent_HUMAN_G3V2	TCONS_00012235	TCONS_00012235	chr6	104785428	104785487	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012667	0.8801088	A	0.8818384	A	0.998801850990882	0	lncRNA	ENST00000503987	NA	AK093203	NA	Hs.435644	XLOC_l2_011145	NA	ENST00000503987	THC2625956	NA	"BROAD Institute lincRNA (XLOC_l2_011145), lincRNA [TCONS_l2_00021896]"	chr4:68284495-68284436	hs|4q13.2	Agilent_HUMAN_G3V2	ENST00000503987	ENST00000503987	chr4	 68284436	 68284495	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46957_PI429285431	0.89709294	A	1.1569352	A	0.835179230458245	0	lncRNA	51062-1_{1..1813}	"gi|397139673|ref|XR_158908.1| PREDICTED: Homo sapiens HEXDC intronic transcript 1 (non-protein coding) (HEXDC-IT1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139673|ref|XR_158908.1| PREDICTED: Homo sapiens HEXDC intronic transcript 1 (non-protein coding) (HEXDC-IT1), misc_RNA"	NA	NA	NA	NA	NA	XR_158908.1	NA	NA	NA	"hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70"	NA	Unknown
CUST_42197_PI429285431	3.9137354	P	4.2017303	P	0.819039593201133	0	lncRNA	44266-1_{1..62}	ENST00000581169 ncrna:miRNA chromosome:GRCh37:1:22592732:22592793:1 gene:ENSG00000266564 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581169 ncrna:miRNA chromosome:GRCh37:1:22592732:22592793:1 gene:ENSG00000266564 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 22592732	 22592793	+	ENSG00000266564	ENST00000581169	NA	NA	NA	NA	NA	inter
CUST_22481_PI429285431	2.2360177	A	0.8977825	A	2.52841836684488	0	lncRNA	24068-1_{1..2295}	lnc-TET1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TET1-1:1	chr10	 70458257	 70460551	+	lnc-TET1-1	lnc-TET1-1:1	ENSG00000260400.1	RP11-119F7.5	TET1	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70chr10:70448257-70454239"	NA	inter
CUST_48284_PI429285431	3.484261	P	3.8029025	P	0.801824552645979	0	lncRNA	52144-1_{1..1944}	hg19_lincRNAsTranscripts_TCONS_l2_00001054 range=chr1:16952086-16970997 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001054 range=chr1:16952086-16970997 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 16952086	 16954029	-	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20"	NA	inter
CUST_20026_PI429285431	7.3320518	P	7.3619757	P	0.979471961901521	0	lncRNA	21679-1_{1..467}	lnc-CDNF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDNF-1:1	chr10	 14886475	 14886941	-	lnc-CDNF-1	lnc-CDNF-1:1	ENSG00000235177.1	RP11-398C13.4	HSPA14	NA	chr10:14880261-14896747	inner
CUST_8527_PI429285431	0.8953831	A	0.9073316	A	0.991752132761439	0	lncRNA	10088-1_{1..3000}	lnc-CX3CR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CX3CR1-1:1	chr3	 39821385	 39824384	-	lnc-CX3CR1-1	lnc-CX3CR1-1:1	ENSG00000250029	ENST00000510765	NA	NA	NA	inter
LNCA_21_P0001279	3.5892935	P	4.1786265	P	0.664650123164704	0	lncRNA	TCONS_00000879	NA	NA	NA	NA	XLOC_000118	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000118), lincRNA [TCONS_00000879]"	chr1:30733477-30733536	hs|1p35.2	Agilent_HUMAN_G3V2	TCONS_00000879	TCONS_00000879	chr1	 30733477	 30733536	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33432_PI429285431	3.7782083	P	3.9874065	P	0.86501784473793	0	lncRNA	35010-1_{1..1708}	n340162|AK130704|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2622|NULL|-0.4183200|-0.2635357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340162|AK130704|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2622|NULL|-0.4183200|-0.2635357	chr10	121027743	121029450	+	NA	NA	NA	NA	GRK5	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80chr10:121017743-121039338"	NA	inner
CUST_31246_PI429285431	0.9048529	A	0.9142739	A	0.993491135438643	0	lncRNA	33036-1_{1..1340}	n337698|AK021887|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|80|NULL|-1.3215600|-0.4322882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337698|AK021887|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|80|NULL|-1.3215600|-0.4322882	chr15	 38625006	 38626345	+	NA	NA	NA	NA	SPRED1	NA	chr15:38615006-38636346	inner
CUST_9120_PI429285431	10.862179	P	10.624638	P	1.17898143427066	0	lncRNA	10639-1_{1..863}	lnc-TRPV2-1:31	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TRPV2-1:31	chr17	 16344388	 16345250	+	lnc-TRPV2-1	lnc-TRPV2-1:31	ENSG00000175061	NCRNA00188	C17orf76	NA	chr17:16345328-16355093	inter
CUST_410_PI429285431	0.8878951	A	0.8878021	A	1.00006446476556	0	lncRNA	402-1_{1..440}	"transcript_id ""ENST00000456460.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456460.2"" | genecode_v17"	chr1	143386117	143386556	+	ENSG00000238261.4	ENST00000456460.2	RP11-435B5.5	RP11-435B5.5-010	NA	NA	NA	inter
CUST_47766_PI429285431	1.6092842	A	1.8165112	A	0.866200553862069	0	lncRNA	51700-3_{6001..6732}	"gi|385137107|ref|NR_047645.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 75, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137107|ref|NR_047645.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 75, non-coding RNA"	ChrY	 15366259	 15366990	-	7404	NR_047645.1	NA	NA	NA	NA	NA	inter
CUST_35154_PI429285431	2.7084284	A	3.38399	P	0.626088453505349	0	lncRNA	36556-1_{1..1544}	n342126|AK098583|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4609|NULL|-0.3933750|-0.3015524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342126|AK098583|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4609|NULL|-0.3933750|-0.3015524	chr6	132451391	132452934	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15467_PI429285431	0.89290965	A	0.9020253	A	0.993701432566996	0	lncRNA	17155-1_{1..868}	lnc-EMX2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EMX2-2:1	chr10	119507211	119508078	+	lnc-EMX2-2	lnc-EMX2-2:1	XLOC_008633	linc-NANOS1-5	NA	NA	NA	inter
CUST_4310_PI429285431	0.87518084	A	0.88162893	A	0.995540497837777	0	lncRNA	4264-2_{3001..3135}	"transcript_id ""ENST00000542219.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000542219.1"" | genecode_v17"	chr12	 68105827	 68105961	-	ENSG00000255970.1	ENST00000542219.1	RP11-43N5.1	RP11-43N5.1-001	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30"	NA	inter
CUST_32658_PI429285431	9.974366	P	10.302201	P	0.796731212653989	0	lncRNA	34309-2_{3001..4226}	n339281|D86977|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1713|NULL|19.1218000|-0.1453473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339281|D86977|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1713|NULL|19.1218000|-0.1453473	chr16	 72130833	 72132058	+	NA	NA	NA	NA	TXNL4B	NA	chr16:72118756-72128215	inner
LNCA_24_P375761	3.5204349	P	2.7176325	A	1.74448646004962	0	lncRNA	XR_110003	XR_110003	XR_110003	   474171	Hs.517850	STGC3	uncharacterized STGC3	ENST00000440528	NA	NA	"PREDICTED: Homo sapiens hypothetical STGC3 (STGC3), miscRNA [XR_110003]"	chr3:49298375-49298434	hs|3p21.31	Agilent_HUMAN_G3V2	XR_110003	XR_110003	chr3	 49298375	 49298434	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34902_PI429285431	0.8850855	A	0.8958565	A	0.992561912233903	0	lncRNA	36326-1_{1..2458}	n341818|AK096947|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4297|NULL|2.1080900|-0.2176073	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341818|AK096947|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4297|NULL|2.1080900|-0.2176073	chr12	  7268333	  7270790	-	NA	NA	NA	NA	C1RL	NA	chr12:7258333-7261869	inner
LNCA_21_P0014142	0.89587575	A	0.9216291	A	0.982307520870079	0	lncRNA	XR_108573	XR_108573	XR_108573	NA	Hs.657602	LOC100506495	uncharacterized LOC100506495	NA	THC2613732	NA	"PREDICTED: Homo sapiens hypothetical LOC100506495 (LOC100506495), miscRNA [XR_108573]"	chr5:38608899-38608958	hs|5p13.1	Agilent_HUMAN_G3V2	XR_108573	XR_108573	chr5	 38608899	 38608958	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33324_PI429285431	0.89202106	A	0.91011685	A	0.987535290314071	0	lncRNA	34906-1_{1..2462}	n340040|CR601196|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2495|NULL|-1.0909800|-0.3425346	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340040|CR601196|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2495|NULL|-1.0909800|-0.3425346	chr10	 60933732	 60936193	-	NA	NA	NA	NA	PHYHIPL	NA	chr10:60936348-60946194	inter
CUST_35948_PI429285431	3.5910854	P	3.2988882	P	1.22450375669514	0	lncRNA	37308-2_{3001..6000}	n344583|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_131|NULL|-1.2937000|-0.1534478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344583|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_131|NULL|-1.2937000|-0.1534478	chrX	114960339	114963338	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27750_PI429285431	4.7189236	P	4.3961215	P	1.25075749715262	0	lncRNA	29332-1_{1..3000}	n324967|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079618|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079618|-0.8935880|-0.1676109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324967|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079618|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079618|-0.8935880|-0.1676109	chr20	 46427796	 46430795	+	NA	NA	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.50"	NA	inter
CUST_33313_PI429285431	1.9284735	A	1.8050953	A	1.08928253143498	0	lncRNA	34896-1_{1..3000}	n340030|CR749831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2484|NULL|-0.7938280|-0.3827225	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340030|CR749831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2484|NULL|-0.7938280|-0.3827225	chr10	 52559792	 52562791	-	NA	NA	NA	NA	A1CF	"hg19_refFlat_PRRG1:range=chrX:37265503-373001215'pad=0,hg19_refFlat_PRRG1:range=chrX:37265503-373001215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30chr10:52559169-52575728"	NA	inner
CUST_7615_PI429285431	9.2088585	P	9.621014	P	0.751499734729439	0	lncRNA	9249-2_{3001..3103}	lnc-TGFBRAP1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TGFBRAP1-5:2	chr2	105491704	105491806	-	lnc-TGFBRAP1-5	lnc-TGFBRAP1-5:2	ENSG00000229743	AC018730.3	NA	NA	NA	inter
LNCA_21_P0012097	0.90279335	A	0.92795175	A	0.982712696159527	0	lncRNA	AK023515	NA	AK023515	NA	Hs.301715	XLOC_l2_008343	NA	NA	THC2604696	NA	"BROAD Institute lincRNA (XLOC_l2_008343), lincRNA [TCONS_l2_00016011]"	chr2:171579795-171579736	hs|2q31.1	Agilent_HUMAN_G3V2	AK023515	AK023515	chr2	171579736	171579795	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19284_PI429285431	0.93054867	A	2.28338	A	0.391522919624511	0	lncRNA	20952-1_{1..414}	lnc-KCNMB2-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNMB2-8:1	chr3	176765422	176765835	+	lnc-KCNMB2-8	lnc-KCNMB2-8:1	ENSG00000231310.2	TBL1XR1-AS1	TBL1XR1	NA	chr3:176755422-176775711	inner
CUST_3331_PI429285431	1.2072675	A	0.9266941	A	1.21467756278632	0	lncRNA	3310-1_{1..581}	"transcript_id ""ENST00000520060.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520060.1"" | genecode_v17"	chr8	137543052	137543632	+	ENSG00000254101.1	ENST00000520060.1	RP11-30J20.1	RP11-30J20.1-002	NA	NA	NA	inter
LNCA_21_P0005786	0.9044421	A	0.928813	A	0.983249259659743	0	lncRNA	TCONS_00014909	NA	NA	NA	NA	XLOC_006976	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006976), lincRNA [TCONS_00014909]"	chr8:1741882-1741823	hs|8p23.3	Agilent_HUMAN_G3V2	TCONS_00014909	TCONS_00014909	chr8	  1741823	  1741882	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011251	4.4702497	P	4.5243397	P	0.963201804490519	0	lncRNA	TCONS_l2_00007764	NA	NA	NA	NA	XLOC_l2_004213	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004213), lincRNA [TCONS_l2_00007764]"	chr14:62331925-62336525	hs|14q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00007764	TCONS_l2_00007764	chr14	 62331925	 62336525	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25306_PI429285431	3.822825	P	3.992166	P	0.889248783018075	0	lncRNA	26836-1_{1..675}	lnc-RGS7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RGS7-2:1	chr1	240754028	240754702	-	lnc-RGS7-2	lnc-RGS7-2:1	ENSG00000231440.1	RP11-467I20.6	GREM2	NA	chr1:240744028-240764048	inner
CUST_4818_PI429285431	0.8842553	A	0.89458233	A	0.992867406819675	0	lncRNA	4761-2_{3001..4714}	"transcript_id ""ENST00000553648.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553648.2"" | genecode_v17"	chr14	 51425977	 51427690	-	ENSG00000258711.2	ENST00000553648.2	RP11-218E20.3	RP11-218E20.3-001	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30"	NA	inter
CUST_16200_PI429285431	4.6729355	P	4.611053	P	1.04382690969231	0	lncRNA	17906-1_{1..295}	lnc-ZNF608-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF608-6:1	chr5	123676792	123677086	-	lnc-ZNF608-6	lnc-ZNF608-6:1	XLOC_004979	linc-CEP120-2	NA	NA	NA	inter
CUST_12656_PI429285431	5.8471813	P	6.184901	P	0.791291025515959	0	lncRNA	14270-1_{1..851}	lnc-SLC25A48-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A48-2:3	chr5	135160587	135161437	+	lnc-SLC25A48-2	lnc-SLC25A48-2:3	XLOC_004565	linc-SLC25A48-1	SLC25A48	NA	chr5:135170365-135170793	inter
CUST_39162_PI429285431	0.9205672	A	0.979846	A	0.959743773175879	0	lncRNA	40139-1_{1..1713}	n385837|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004fbm.1||0.0234719|-0.2622472	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n385837|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004fbm.1||0.0234719|-0.2622472	chrX	140590842	140592554	+	NA	NA	NA	NA	SPANXA2	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70chrX:140677835-140678899"	NA	inter
CUST_9567_PI429285431	0.883834	A	0.898949	A	0.98957777212133	0	lncRNA	11082-1_{1..3000}	lnc-ARFGEF2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARFGEF2-2:3	chr20	 47103590	 47106589	+	lnc-ARFGEF2-2	lnc-ARFGEF2-2:3	XLOC_013552	linc-ARFGEF2-3	NA	NA	NA	inter
CUST_40721_PI429285431	1.9509782	A	2.5551412	A	0.657852932124013	0	lncRNA	41456-1_{1..3000}	n410287|NR_037177_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_8||-1.1720900|-0.3991698	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410287|NR_037177_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_8||-1.1720900|-0.3991698	chr6	  4319144	  4322143	+	NA	NA	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10"	NA	inter
LNCA_21_P0002434	7.4570665	P	7.4514723	P	1.0038851315903	0	lncRNA	TCONS_00004236	NA	NA	NA	NA	XLOC_002073	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002073), lincRNA [TCONS_00004236]"	chr2:44476348-44475487	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00004236	TCONS_00004236	chr2	 44475487	 44476348	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20482_PI429285431	3.864353	P	3.8491669	P	1.0105817977653	0	lncRNA	22125-1_{1..795}	lnc-HDDC3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HDDC3-2:1	chr15	 91463796	 91464590	-	lnc-HDDC3-2	lnc-HDDC3-2:1	ENSG00000259661.1	AC068831.15	UNC45A	NA	chr15:91473410-91474416	inner
CUST_32136_PI429285431	9.017161	P	9.454548	P	0.738470911905032	0	lncRNA	33836-1_{1..1984}	n338703|AF131834|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1123|NULL|-0.9709160|-0.2978639	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338703|AF131834|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1123|NULL|-0.9709160|-0.2978639	chr2	 25380062	 25382045	+	NA	NA	NA	NA	EFR3B	NA	chr2:25370062-25382004	inner
CUST_45710_PI429285431	0.97176844	A	1.4528711	A	0.716429843307152	0	lncRNA	50078-2_{3001..4188}	"gi|375298750|ref|NR_046331.1| Homo sapiens BR serine/threonine kinase 2 (BRSK2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375298750|ref|NR_046331.1| Homo sapiens BR serine/threonine kinase 2 (BRSK2), transcript variant 5, non-coding RNA"	Chr11	  1414129	  1415316	+	9024	NR_046331.1	NA	NA	NA	NA	NA	inter
CUST_48712_PI429285431	1.3685305	A	0.918908	A	1.36568286124047	0	lncRNA	52554-1_{1..837}	hg19_lincRNAsTranscripts_TCONS_l2_00013964 range=chr2:127656448-127659673 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013964 range=chr2:127656448-127659673 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	127656448	127657284	+	NA	NA	NA	NA	LOC339760	NA	chr2:127646773-127659013	inter
CUST_15069_PI429285431	1.8522761	A	2.5689158	A	0.608513130976703	0	lncRNA	16733-1_{1..827}	lnc-HSPH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HSPH1-1:1	chr13	 31630181	 31631007	-	lnc-HSPH1-1	lnc-HSPH1-1:1	XLOC_010561	linc-HMGB1-2	NA	NA	NA	inter
CUST_31747_PI429285431	0.8856786	A	0.8898651	A	0.997102345656554	0	lncRNA	33488-1_{1..1867}	n338284|BC036686|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|677|NULL|-0.1364330|-0.2048359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338284|BC036686|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|677|NULL|-0.1364330|-0.2048359	chr1	156479645	156481511	+	NA	NA	NA	NA	MEF2D	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40chr1:156469645-156470529"	NA	inter
CUST_39152_PI429285431	0.9057358	A	0.89953876	A	1.00430469951902	0	lncRNA	40129-1_{1..2293}	n385804|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004eln.1||-1.2887200|-0.3069389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385804|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004eln.1||-1.2887200|-0.3069389	chrX	103173478	103175770	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40046_PI429285431	2.340009	A	2.845732	A	0.704307328727885	0	lncRNA	40899-1_{1..1731}	n407250|NR_026716|lncRNA|Homosapiens||RefGeneNoncode|NR_026716||3.3085400|-0.1615240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407250|NR_026716|lncRNA|Homosapiens||RefGeneNoncode|NR_026716||3.3085400|-0.1615240	chr19	 55043908	 55045638	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42146_PI429285431	0.8793314	A	0.886205	A	0.995246915368147	0	lncRNA	44172-1_{1..134}	ENST00000362145 ncrna:miRNA chromosome:GRCh37:14:101528343:101528476:1 gene:ENSG00000199015 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362145 ncrna:miRNA chromosome:GRCh37:14:101528343:101528476:1 gene:ENSG00000199015 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101528343	101528476	+	ENSG00000199015	ENST00000362145	NA	NA	NA	NA	NA	inter
CUST_20744_PI429285431	2.55175	A	0.9129207	A	3.11413027785621	0	lncRNA	22378-1_{1..554}	lnc-KBTBD5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-KBTBD5-2:1	chr3	 42786435	 42786988	+	lnc-KBTBD5-2	lnc-KBTBD5-2:1	ENSG00000173811.6	CCDC13-AS1	CCDC13	"hg19_refFlat_CCDC13:range=chr3:42750472-427998375'pad=0,hg19_refFlat_CCDC13:range=chr3:42750472-427998375'pad=0 3'pad=0 strand=- repeatMasking=none,-97.80chr3:42776435-42796650"	NA	inter
LNCA_21_P0008039	5.564577	P	5.661075	P	0.935300588221539	0	lncRNA	TCONS_00021735	NA	NA	NA	NA	XLOC_010321	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010321), lincRNA [TCONS_00021735]"	chr13:27092845-27092904	hs|13q12.13	Agilent_HUMAN_G3V2	TCONS_00021735	TCONS_00021735	chr13	 27092845	 27092904	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31635_PI429285431	7.874179	P	6.922621	P	1.93396005907341	0	lncRNA	33387-1_{1..2109}	n338156|AK130004|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|545|NULL|-0.9701750|-0.3135994	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338156|AK130004|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|545|NULL|-0.9701750|-0.3135994	chr22	 44107889	 44109997	-	NA	NA	NA	NA	EFCAB6	NA	chr22:44097889-44119998	inner
CUST_11685_PI429285431	6.411872	P	5.8108926	P	1.51674588786022	0	lncRNA	13263-1_{1..1373}	lnc-UQCRFS1-9:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UQCRFS1-9:10	chr19	 28284440	 28285812	-	lnc-UQCRFS1-9	lnc-UQCRFS1-9:10	XLOC_013282	linc-ZNF681-4	NA	NA	NA	inter
CUST_23996_PI429285431	0.87618256	A	0.88082266	A	0.996788894430405	0	lncRNA	25550-2_{3001..3398}	lnc-TRRAP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRRAP-1:1	chr7	 98636040	 98636437	+	lnc-TRRAP-1	lnc-TRRAP-1:1	ENSG00000242687.2	AC004893.11	SMURF1	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_SMURF1:range=chr7:98628207-987414035'pad=0,hg19_refFlat_SMURF1:range=chr7:98628207-987414035'pad=0 3'pad=0 strand=- repeatMasking=none,-93.80;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80chr7:98625058-98644100"	NA	inner
CUST_37220_PI429285431	0.909634	A	2.163602	A	0.419293392342371	0	lncRNA	38332-1_{1..1803}	n345655|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1204|NULL|-1.6147900|-0.3406264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345655|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1204|NULL|-1.6147900|-0.3406264	chr4	153457700	153459502	+	NA	NA	NA	NA	FBXW7	NA	chr4:153447700-153456172	inter
CUST_51723_PI429285431	0.8979155	A	0.9121237	A	0.9901999626536	0	lncRNA	55280-2_{3001..5523}	hg19_lincRNAsTranscripts_TCONS_l2_00011988 range=chr18:14221252-14226965 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011988 range=chr18:14221252-14226965 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 14224252	 14226774	-	NA	NA	NA	NA	LOC100652806	"hg19_refFlat_ANKRD20A3:range=chr9:42368415-424104835'pad=0,hg19_refFlat_ANKRD20A3:range=chr9:42368415-424104835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ANKRD20A4:range=chr9:69382093-694241765'pad=0,hg19_refFlat_ANKRD20A4:range=chr9:69382093-694241765'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ANKRD20A2:range=chr9:42368415-424104835'pad=0,hg19_refFlat_ANKRD20A2:range=chr9:42368415-424104835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_RHOT1:range=chr17:30469712-305517525'pad=0,hg19_refFlat_RHOT1:range=chr17:30469712-305517525'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ANKRD20A1:range=chr9:67926873-679689135'pad=0,hg19_refFlat_ANKRD20A1:range=chr9:67926873-679689135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ANKRD20A3:range=chr9:43091352-431334325'pad=0,hg19_refFlat_ANKRD20A3:range=chr9:43091352-431334325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ANKRD20A3:range=chr9:67926873-679689135'pad=0,hg19_refFlat_ANKRD20A3:range=chr9:67926873-679689135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ANKRD20A2:range=chr9:43091352-431334325'pad=0,hg19_refFlat_ANKRD20A2:range=chr9:43091352-431334325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80chr18:14234721-14236965"	NA	inter
CUST_31630_PI429285431	0.8916493	A	0.89293873	A	0.999106634519736	0	lncRNA	33383-2_{3001..3081}	n338151|AK127192|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|540|NULL|0.0880025|-0.3079078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338151|AK127192|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|540|NULL|0.0880025|-0.3079078	chr15	 96841163	 96841243	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
CUST_22669_PI429285431	5.3317914	P	5.244684	P	1.06223826082476	0	lncRNA	24253-1_{1..3000}	lnc-CCDC148-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC148-1:1	chr2	159591240	159594239	-	lnc-CCDC148-1	lnc-CCDC148-1:1	ENSG00000204380.2	AC005042.4	NA	"hg19_refFlat_PKP4:range=chr2:159389697-1595371895'pad=0,hg19_refFlat_PKP4:range=chr2:159389697-1595371895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10"	NA	inter
CUST_19765_PI429285431	1.0203862	A	1.4826906	A	0.725825978866616	0	lncRNA	21423-1_{1..800}	lnc-NUDCD2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUDCD2-1:2	chr5	162920449	162921248	-	lnc-NUDCD2-1	lnc-NUDCD2-1:2	ENSG00000251018.2	RP11-80G7.1	MAT2B	"hg19_refFlat_HMMR:range=chr5:162887699-1629181705'pad=0,hg19_refFlat_HMMR:range=chr5:162887699-1629181705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_HMMR:range=chr5:162887733-1629181705'pad=0,hg19_refFlat_HMMR:range=chr5:162887733-1629181705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20chr5:162930231-162931040"	NA	inter
CUST_44838_PI429285431	0.8765846	A	1.5017872	A	0.648328725079982	0	lncRNA	49367-1_{1..1489}	"gi|382543410|ref|NR_047511.1| Homo sapiens antisense of IGF2R non-protein coding RNA (AIRN), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|382543410|ref|NR_047511.1| Homo sapiens antisense of IGF2R non-protein coding RNA (AIRN), transcript variant 1, non-coding RNA"	Chr6	160424323	160425811	-	100271873	NR_047511.1	NA	NA	NA	NA	NA	inter
CUST_11027_PI429285431	1.0654814	A	0.9002158	A	1.12137250358232	0	lncRNA	12573-1_{1..254}	lnc-CRH-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRH-3:1	chr8	 67123833	 67124086	-	lnc-CRH-3	lnc-CRH-3:1	XLOC_007110	linc-CRH-4	NA	NA	NA	inter
CUST_21056_PI429285431	0.89421195	A	0.8949601	A	0.999481556375228	0	lncRNA	22683-1_{1..454}	lnc-TAS2R1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TAS2R1-2:3	chr5	  9712284	  9712737	-	lnc-TAS2R1-2	lnc-TAS2R1-2:3	ENSG00000249781.1	CTD-2143L24.1	NA	NA	NA	inter
CUST_32938_PI429285431	0.8833126	A	1.3198874	A	0.738886768979021	0	lncRNA	34559-1_{1..2318}	n339610|AK092200|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2054|NULL|-1.1334300|-0.2834678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339610|AK092200|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2054|NULL|-1.1334300|-0.2834678	chr3	139326524	139328841	+	NA	NA	NA	NA	NMNAT3	NA	chr3:139316524-139338841	inner
LNCA_21_P0014771	7.462275	P	6.101042	P	2.56904649394486	0	lncRNA	XR_113070	XR_113070	XR_113070	NA	NA	LOC100509105	uncharacterized LOC100509105	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100509105 (LOC100509105), miscRNA [XR_113070]"	chr7:105891330-105891389	hs|7q22.3	Agilent_HUMAN_G3V2	XR_113070	XR_113070	chr7	105891330	105891389	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34194_PI429285431	3.0470388	A	3.6582067	P	0.654666517404054	0	lncRNA	35709-1_{1..801}	n341048|AL357454|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3514|NULL|-0.9949860|-0.2522915	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341048|AL357454|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3514|NULL|-0.9949860|-0.2522915	chr11	 64885781	 64886581	+	NA	NA	NA	NA	TM7SF2	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30chr11:64879341-64883707"	NA	inter
LNCA_21_P0007973	0.8764776	A	0.8781487	A	0.99884235233821	0	lncRNA	ENST00000444605	NA	NA	NA	NA	XLOC_010520	NA	ENST00000444605	NA	NA	"BROAD Institute lincRNA (XLOC_010520), lincRNA [TCONS_00021607]"	chr13:19293004-19292945	hs|13q11	Agilent_HUMAN_G3V2	ENST00000444605	ENST00000444605	chr13	 19292945	 19293004	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21720_PI429285431	0.88608897	A	0.87908316	A	1.00486786720456	0	lncRNA	23330-1_{1..168}	lnc-RAP2C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAP2C-1:1	chrX	131261816	131261983	-	lnc-RAP2C-1	lnc-RAP2C-1:1	ENSG00000251646.1	RP1-305B16.2	FRMD7	NA	chrX:131251816-131262050	inner
CUST_3504_PI429285431	0.8901574	A	0.89249504	A	0.998380983448449	0	lncRNA	3475-1_{1..659}	"transcript_id ""ENST00000425157.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425157.2"" | genecode_v17"	chr9	105969455	105970113	-	ENSG00000225564.2	ENST00000425157.2	RP11-341A22.2	RP11-341A22.2-003	NA	NA	NA	inter
CUST_9572_PI429285431	5.615603	P	5.6139703	P	1.00113234201737	0	lncRNA	11086-1_{1..619}	lnc-CDK20-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK20-1:1	chr9	 90480522	 90481140	-	lnc-CDK20-1	lnc-CDK20-1:1	XLOC_007761	linc-GAS1-2	NA	NA	NA	inter
CUST_26468_PI429285431	1.6958749	A	1.1910875	A	1.41891424520469	0	lncRNA	27976-1_{1..624}	lnc-SSTR2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SSTR2-3:1	chr17	 70835493	 70836116	+	lnc-SSTR2-3	lnc-SSTR2-3:1	ENSG00000264196.1	RP11-171G2.1	SLC39A11	NA	chr17:70825493-70845857	inner
CUST_37978_PI429285431	0.88216674	A	0.8829672	A	0.999445317301208	0	lncRNA	39066-1_{1..3000}	n346534|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2084|NULL|-1.3984300|-0.3511436	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346534|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2084|NULL|-1.3984300|-0.3511436	chrX	121361030	121364029	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19876_PI429285431	1.5723003	A	2.111125	A	0.688331433972395	0	lncRNA	21532-1_{1..694}	lnc-C2orf42-3:38	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:38	chr2	 70312679	 70313372	-	lnc-C2orf42-3	lnc-C2orf42-3:38	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_3187_PI429285431	1.403659	A	0.90452844	A	1.41336154349316	0	lncRNA	3167-1_{1..731}	"transcript_id ""ENST00000521147.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521147.1"" | genecode_v17"	chr8	 76136004	 76136734	-	ENSG00000249395.2	ENST00000521147.1	RP11-697M17.1	RP11-697M17.1-002	NA	NA	NA	inter
CUST_3249_PI429285431	0.9059565	A	0.9184597	A	0.991370888529227	0	lncRNA	3228-1_{1..430}	"transcript_id ""ENST00000524369.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524369.1"" | genecode_v17"	chr8	102134373	102134802	-	ENSG00000253395.1	ENST00000524369.1	KB-1460A1.1	KB-1460A1.1-001	NA	NA	NA	inter
CUST_8850_PI429285431	0.8812212	A	1.262763	A	0.767616804416225	0	lncRNA	10389-1_{1..2097}	lnc-MRPL40-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MRPL40-1:1	chr22	 19435965	 19438061	+	lnc-MRPL40-1	lnc-MRPL40-1:1	ENSG00000185065	AC000068.5	UFD1L	NA	chr22:19437464-19447628	inner
LNCA_33_P3401477	0.88010603	A	0.8819752	A	0.998705229024687	0	lncRNA	XR_112756	XR_112756	XR_112756	100130172	Hs.616629	LOC100130172	uncharacterized LOC100130172	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100130172 (LOC100130172), miscRNA [XR_112756]"	chr5:137372483-137372542	hs|5q31.2	Agilent_HUMAN_G3V2	XR_112756	XR_112756	chr5	137372483	137372542	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8468_PI429285431	1.1327372	A	1.351581	A	0.85925378096538	0	lncRNA	10034-2_{3001..3872}	lnc-CCL18-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCL18-2:1	chr17	 34316570	 34317441	+	lnc-CCL18-2	lnc-CCL18-2:1	ENSG00000251502	ENST00000514091	CCL16	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_CCL14:range=chr17:34310837-343136855'pad=0,hg19_refFlat_CCL14:range=chr17:34310837-343136855'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40chr17:34303570-34308523"	NA	inter
CUST_37015_PI429285431	0.8774998	A	1.1329631	A	0.83771807080032	0	lncRNA	38154-2_{3001..4691}	n345471|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1020|NULL|-1.3531000|-0.3454455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345471|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1020|NULL|-1.3531000|-0.3454455	chr1	167391163	167392853	+	NA	NA	NA	NA	POU2F1	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr1:167378163-167396582"	NA	inner
CUST_51030_PI429285431	5.4564924	P	5.6467986	P	0.876419688799339	0	lncRNA	54672-3_{6001..7600}	hg19_lincRNAsTranscripts_TCONS_l2_00007055 range=chr13:19793293-19820881 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007055 range=chr13:19793293-19820881 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 19799293	 19800892	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17834_PI429285431	0.89214313	A	0.8852326	A	1.00480150484374	0	lncRNA	19569-1_{1..1422}	lnc-RPL24-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPL24-2:1	chr3	102392598	102394019	-	lnc-RPL24-2	lnc-RPL24-2:1	XLOC_003194	linc-RPL24-2	NA	NA	NA	inter
CUST_15240_PI429285431	0.88824093	A	0.900933	A	0.991241111993857	0	lncRNA	16911-1_{1..428}	lnc-TASP1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TASP1-6:1	chr20	 12637191	 12637618	-	lnc-TASP1-6	lnc-TASP1-6:1	XLOC_013655	linc-JAG1-3	NA	NA	NA	inter
LNCA_21_P0003284	2.127468	A	1.9918222	A	1.0985844679914	0	lncRNA	TCONS_00007175	NA	NA	NA	NA	XLOC_003130	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003130), lincRNA [TCONS_00007175]"	chr3:53119497-53119438	hs|3p21.1	Agilent_HUMAN_G3V2	TCONS_00007175	TCONS_00007175	chr3	 53119438	 53119497	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41498_PI429285431	16.05227	P	16.275146	P	0.856855598556917	0	lncRNA	42714-1_{1..107}	ENST00000582555 ncrna:miRNA chromosome:GRCh37:11:73068180:73068286:1 gene:ENSG00000266866 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582555 ncrna:miRNA chromosome:GRCh37:11:73068180:73068286:1 gene:ENSG00000266866 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 73068180	 73068286	+	ENSG00000266866	ENST00000582555	NA	NA	ARHGEF17	NA	chr11:73058180-73078286	inner
CUST_42917_PI429285431	2.7938104	A	3.2381768	P	0.734907000802258	0	lncRNA	46021-1_{1..132}	ENST00000362600 ncrna:snoRNA chromosome:GRCh37:7:12740383:12740514:-1 gene:ENSG00000199470 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362600 ncrna:snoRNA chromosome:GRCh37:7:12740383:12740514:-1 gene:ENSG00000199470 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 12740383	 12740514	-	ENSG00000199470	ENST00000362600	NA	NA	ARL4A	NA	chr7:12730383-12730559	inter
CUST_44303_PI429285431	6.3831506	P	5.842715	P	1.45441158866631	0	lncRNA	48936-1_{1..1696}	"gi|334085275|ref|NR_038322.1| Homo sapiens mitogen-activated protein kinase kinase kinase 13 (MAP3K13), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|334085275|ref|NR_038322.1| Homo sapiens mitogen-activated protein kinase kinase kinase 13 (MAP3K13), transcript variant 4, non-coding RNA"	Chr3	185000729	185002424	+	9175	NR_038322.1	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00"	NA	inter
CUST_40694_PI429285431	0.89246154	A	0.9030708	A	0.992673194215431	0	lncRNA	41431-1_{1..1498}	n410254|NR_037173_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037173_7||-0.8980780|-0.2446571	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410254|NR_037173_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037173_7||-0.8980780|-0.2446571	chr6	  4256390	  4257887	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12005_PI429285431	1.0215213	A	2.0316803	A	0.496491526172587	0	lncRNA	13586-1_{1..353}	lnc-AC005609.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC005609.1-3:1	chr5	140457355	140457707	-	lnc-AC005609.1-3	lnc-AC005609.1-3:1	XLOC_005028	linc-HARS-1	PCDHB1	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10chr5:140447355-140467585"	NA	inter
LNCA_21_P0014213	3.7677329	P	0.93573004	A	7.1206199819297	0	lncRNA	XR_108881	XR_108881	XR_108881	NA	NA	LOC100506966	uncharacterized LOC100506966	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506966 (LOC100506966), miscRNA [XR_108881]"	chr8:121065937-121078997	hs|8q24.12	Agilent_HUMAN_G3V2	XR_108881	XR_108881	chr8	121065937	121078997	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00317953	4.0127535	P	4.3529167	P	0.789951946165109	0	lncRNA	XR_111691	XR_111691	XR_111691	NA	NA	LOC100508196	uncharacterized LOC100508196	NA	THC2603416	NA	"PREDICTED: Homo sapiens hypothetical LOC100508196 (LOC100508196), miscRNA [XR_111691]"	chr17:38683190-38683249	hs|17q21.2	Agilent_HUMAN_G3V2	XR_111691	XR_111691	chr17	 38683190	 38683249	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26880_PI429285431	1.376354	A	0.9026941	A	1.38862774296694	0	lncRNA	28397-1_{1..1654}	n323955|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054580|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054580|-0.1826800|-0.3361950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323955|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054580|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054580|-0.1826800|-0.3361950	chr9	131291206	131292859	+	NA	NA	NA	NA	SPTAN1	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40chr9:131314837-131325768"	NA	inner
LNCA_21_P0005419	0.90535957	A	0.92861944	A	0.984006758744497	0	lncRNA	TCONS_00013568	NA	NA	NA	NA	XLOC_006213	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006213), lincRNA [TCONS_00013568]"	chr7:112699004-112699063	hs|7q31.1	Agilent_HUMAN_G3V2	TCONS_00013568	TCONS_00013568	chr7	112699004	112699063	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00321348	5.244684	P	4.8614902	P	1.30422592266866	0	lncRNA	ENST00000454185	NA	NA	NA	NA	XLOC_005921	NA	ENST00000454185	NA	NA	"BROAD Institute lincRNA (XLOC_005921), lincRNA [TCONS_00012826]"	chr6:167653797-167653738	hs|6q27	Agilent_HUMAN_G3V2	ENST00000454185	ENST00000454185	chr6	167653738	167653797	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37601_PI429285431	6.1637053	P	6.105342	P	1.04128378113893	0	lncRNA	38699-1_{1..2609}	n346077|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1627|NULL|-1.5399300|-0.1126680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346077|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1627|NULL|-1.5399300|-0.1126680	chr11	  2004359	  2006967	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24261_PI429285431	0.9051342	A	0.9093307	A	0.997095434293711	0	lncRNA	25812-1_{1..635}	lnc-CXorf56-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CXorf56-2:1	chrX	118527189	118527823	-	lnc-CXorf56-2	lnc-CXorf56-2:1	ENSG00000226661.1	RP5-1139I1.2	SLC25A43	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chrX:118517189-118537558"	NA	inter
CUST_3863_PI429285431	0.89003587	A	0.90196705	A	0.99176403912388	0	lncRNA	3832-1_{1..306}	"transcript_id ""ENST00000525381.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525381.1"" | genecode_v17"	chr11	 13866409	 13866714	-	ENSG00000254930.1	ENST00000525381.1	RP11-98J9.3	RP11-98J9.3-001	NA	NA	NA	inter
CUST_50466_PI429285431	0.8923004	A	0.8967763	A	0.996902350182568	0	lncRNA	54169-2_{3001..3649}	hg19_lincRNAsTranscripts_TCONS_l2_00030535 range=chrX:73465729-73495795 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030535 range=chrX:73465729-73495795 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 73468729	 73469377	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19109_PI429285431	0.8932973	A	2.033936	A	0.453558736808102	0	lncRNA	20795-2_{3001..3454}	lnc-HSP90AA1-9:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-HSP90AA1-9:11	chr14	102021559	102022012	-	lnc-HSP90AA1-9	lnc-HSP90AA1-9:11	Dio3os	Dio3as	DIO3	NA	chr14:102027688-102029789	inter
LNCA_21_P0000927	5.4510145	P	5.6267934	P	0.885289429074901	0	lncRNA	ENST00000443930	NA	AK054708	NA	Hs.555112	XLOC_000675	NA	ENST00000443930	THC2628642	NA	"BROAD Institute lincRNA (XLOC_000675), lincRNA [TCONS_00000074]"	chr1:1945217-1945158	hs|1p36.33	Agilent_HUMAN_G3V2	ENST00000443930	ENST00000443930	chr1	  1945158	  1945217	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18658_PI429285431	1.1616036	A	1.3143117	A	0.899560301467962	0	lncRNA	20361-1_{1..3000}	lnc-FAM75A6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-FAM75A6-3:1	chr9	 44260422	 44263421	-	lnc-FAM75A6-3	lnc-FAM75A6-3:1	ENSG00000233424	RP11-175I6.5	NA	NA	NA	inter
CUST_16341_PI429285431	1.5212201	A	1.6292657	A	0.92784414916325	0	lncRNA	18042-1_{1..346}	lnc-SOX11-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOX11-4:1	chr2	  5434487	  5434832	+	lnc-SOX11-4	lnc-SOX11-4:1	XLOC_001325	linc-SOX11-1	NA	NA	NA	inter
LNCA_21_P0002629	1.1420103	A	1.4011562	A	0.835582452050359	0	lncRNA	TCONS_00005018	NA	NA	NA	NA	XLOC_001866	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001866), lincRNA [TCONS_00005018]"	chr2:219838986-219839045	hs|2q35	Agilent_HUMAN_G3V2	TCONS_00005018	TCONS_00005018	chr2	219838986	219839045	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43793_PI429285431	11.523434	P	12.287228	P	0.58894548332958	0	lncRNA	48524-1_{1..814}	"gi|397138944|ref|XR_158757.1| PREDICTED: Homo sapiens uncharacterized LOC100996537 (LOC100996537), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138944|ref|XR_158757.1| PREDICTED: Homo sapiens uncharacterized LOC100996537 (LOC100996537), misc_RNA"	NA	NA	NA	NA	NA	XR_158757.1	NA	NA	NA	NA	NA	Unknown
CUST_20535_PI429285431	4.2745404	P	5.1152954	P	0.558351292748503	0	lncRNA	22177-1_{1..3000}	lnc-PFKL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PFKL-1:1	chr21	 45753085	 45756084	+	lnc-PFKL-1	lnc-PFKL-1:1	ENSG00000184441.4	AP001062.7	PFKL	"hg19_refFlat_C21orf2:range=chr21:45750081-457590775'pad=0,hg19_refFlat_C21orf2:range=chr21:45750081-457590775'pad=0 3'pad=0 strand=- repeatMasking=none,-103.10;hg19_refFlat_C21orf2:range=chr21:45750081-457556695'pad=0,hg19_refFlat_C21orf2:range=chr21:45750081-457556695'pad=0 3'pad=0 strand=- repeatMasking=none,-103.10chr21:45743085-45747261"	NA	inner
LNCA_21_P0013057	0.88395065	A	0.8946568	A	0.992606529484872	0	lncRNA	TCONS_l2_00024571	NA	NA	NA	NA	XLOC_l2_012847	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012847), lincRNA [TCONS_l2_00024571]"	chr6:2852797-2852738	hs|6p25.2	Agilent_HUMAN_G3V2	TCONS_l2_00024571	TCONS_l2_00024571	chr6	  2852738	  2852797	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014117	0.8835716	A	0.89394903	A	0.992832721982047	0	lncRNA	XR_108489	XR_108489	XR_108489	NA	NA	LOC100507210	uncharacterized LOC100507210	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507210 (LOC100507210), miscRNA [XR_108489]"	chr3:133774153-133774094	hs|3q22.2	Agilent_HUMAN_G3V2	XR_108489	XR_108489	chr3	133774094	133774153	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23147_PI429285431	0.90072805	A	0.9137478	A	0.991015996502326	0	lncRNA	24718-1_{1..694}	lnc-LRRC40-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC40-2:2	chr1	 70487945	 70488638	-	lnc-LRRC40-2	lnc-LRRC40-2:2	ENSG00000237919.1	RP11-181B18.1	LRRC7	"hg19_refFlat_LRRC7:range=chr1:70225888-705875705'pad=0,hg19_refFlat_LRRC7:range=chr1:70225888-705875705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10chr1:70477945-70498081"	NA	inner
LNCA_21_P0008711	0.87949294	A	0.8868527	A	0.994911593133054	0	lncRNA	TCONS_00023592	NA	NA	NA	NA	XLOC_011406	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011406), lincRNA [TCONS_00023592]"	chr15:26359093-26359034	hs|15q12	Agilent_HUMAN_G3V2	TCONS_00023592	TCONS_00023592	chr15	 26359034	 26359093	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14087_PI429285431	0.90701735	A	1.0924311	A	0.879396837846749	0	lncRNA	15732-1_{1..285}	lnc-DCTD-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCTD-8:1	chr4	181838938	181839222	-	lnc-DCTD-8	lnc-DCTD-8:1	XLOC_004190	linc-AGA-3	NA	NA	NA	inter
LNCA_21_P0009717	1.4023465	A	1.7588501	A	0.781055190489434	0	lncRNA	TCONS_00027004	NA	NA	NA	NA	XLOC_013049	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013049), lincRNA [TCONS_00027004]"	chr19:35704276-35704335	hs|19q13.12	Agilent_HUMAN_G3V2	TCONS_00027004	TCONS_00027004	chr19	 35704276	 35704335	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20511_PI429285431	0.8848605	A	0.896006	A	0.992304292858856	0	lncRNA	22153-1_{1..687}	lnc-VSTM4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VSTM4-1:1	chr10	 50186790	 50187476	-	lnc-VSTM4-1	lnc-VSTM4-1:1	ENSG00000233665.1	RP11-523O18.5	WDFY4	"hg19_refFlat_WDFY4:range=chr10:49917778-501906205'pad=0,hg19_refFlat_WDFY4:range=chr10:49917778-501906205'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.90chr10:50176790-50191001"	NA	inner
CUST_29106_PI429285431	2.444468	A	1.9047023	A	1.45373640498205	0	lncRNA	30839-1_{1..545}	n326604|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000022253|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000022253|-1.0631600|-0.3037502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326604|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000022253|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000022253|-1.0631600|-0.3037502	chr1	 56653222	 56653766	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010014	0.8765197	A	0.87994736	A	0.997626947287134	0	lncRNA	TCONS_00028332	NA	NA	NA	NA	XLOC_013683	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013683), lincRNA [TCONS_00028332]"	chr20:22490858-22490799	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028332	TCONS_00028332	chr20	 22490799	 22490858	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5980_PI429285431	4.4952364	P	5.1885495	P	0.618432009953674	0	lncRNA	5908-1_{1..749}	"transcript_id ""ENST00000581657.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581657.1"" | genecode_v17"	chr17	 75253819	 75254567	-	ENSG00000263718.2	ENST00000581657.1	RP11-285E9.6	RP11-285E9.6-002	9-Sep	NA	chr17:75277492-75280408	inter
CUST_10122_PI429285431	0.90828925	A	0.9190489	A	0.992569720968042	0	lncRNA	11647-1_{1..657}	lnc-TNFAIP6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFAIP6-1:1	chr2	151859604	151860260	+	lnc-TNFAIP6-1	lnc-TNFAIP6-1:1	XLOC_001708	linc-TNFAIP6-1	NA	NA	NA	inter
CUST_28126_PI429285431	0.8843845	A	1.1845641	A	0.812151285971608	0	lncRNA	29749-1_{1..586}	n325400|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323816|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323816|-1.2620400|-0.4412424	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325400|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323816|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323816|-1.2620400|-0.4412424	chr2	 17842312	 17842897	-	NA	NA	NA	NA	VSNL1	NA	chr2:17832312-17837706	inter
CUST_25577_PI429285431	1.7805545	A	1.3154256	A	1.38044068566745	0	lncRNA	27107-1_{1..927}	lnc-CTSZ-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTSZ-2:1	chr20	 57463829	 57464755	-	lnc-CTSZ-2	lnc-CTSZ-2:1	ENSG00000225806.1	RP1-309F20.3	GNAS	NA	chr20:57453829-57473881	inner
CUST_43608_PI429285431	2.962841	A	2.7072096	A	1.19385812445716	0	lncRNA	48371-1_{1..332}	"gi|397138907|ref|XR_158744.1| PREDICTED: Homo sapiens uncharacterized LOC100996521 (LOC100996521), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138907|ref|XR_158744.1| PREDICTED: Homo sapiens uncharacterized LOC100996521 (LOC100996521), misc_RNA"	Chr1	150859694	150860025	+	100996521	XR_158744.2	NA	NA	NA	NA	NA	inter
CUST_35213_PI429285431	0.8810252	A	1.7323041	A	0.554293156183964	0	lncRNA	36613-1_{1..1096}	n342199|AF167080|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4689|NULL|1.0834000|-0.1338657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342199|AF167080|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4689|NULL|1.0834000|-0.1338657	chrX	  8432870	  8433965	+	NA	NA	NA	NA	VCX3B	NA	chrX:8432871-8434551	inner
CUST_19913_PI429285431	5.8513308	P	5.8634853	P	0.991610532251034	0	lncRNA	21568-1_{1..460}	lnc-HELZ-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HELZ-3:1	chr17	 65017738	 65018197	-	lnc-HELZ-3	lnc-HELZ-3:1	ENSG00000264491.1	RP11-349A8.3	CACNG4	NA	chr17:65007738-65027859	inner
CUST_46846_PI429285431	3.3650749	P	2.569649	A	1.73558966451073	0	lncRNA	50982-1_{1..3000}	"gi|302191659|ref|NR_036474.1| Homo sapiens G patch domain containing 8 (GPATCH8), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302191659|ref|NR_036474.1| Homo sapiens G patch domain containing 8 (GPATCH8), transcript variant 2, non-coding RNA"	Chr17	 42472645	 42475644	-	23131	NR_036474.1	NA	NA	NA	NA	NA	inter
CUST_35877_PI429285431	5.9921474	P	6.001831	P	0.993310316192382	0	lncRNA	37266-1_{1..599}	n344539|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_87|NULL|-1.2964800|-0.1457955	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344539|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_87|NULL|-1.2964800|-0.1457955	chr7	 45022561	 45023159	+	NA	NA	NA	NA	MYO1G	NA	chr7:45012561-45018704	inter
CUST_51038_PI429285431	7.5570536	P	7.739975	P	0.880917366403187	0	lncRNA	54680-1_{1..673}	hg19_lincRNAsTranscripts_TCONS_l2_00006703 range=chr13:19956534-19957261 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006703 range=chr13:19956534-19957261 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 19956534	 19957206	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38197_PI429285431	7.4315834	P	8.03016	P	0.660405206810269	0	lncRNA	39265-1_{1..1770}	n381526|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kfc.1||-0.4979240|-0.3483331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381526|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kfc.1||-0.4979240|-0.3483331	chr10	 89706924	 89708693	+	NA	NA	NA	NA	PTEN	"hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.82;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90chr10:89696924-89718694"	NA	inner
LNCA_21_P0009842	2.3077488	A	2.103948	A	1.15172860653685	0	lncRNA	ENST00000445278	NA	NA	NA	NA	XLOC_013523	NA	ENST00000445278	NA	NA	"BROAD Institute lincRNA (XLOC_013523), lincRNA [TCONS_00027931]"	chr20:38754922-38754981	hs|20q12	Agilent_HUMAN_G3V2	ENST00000445278	ENST00000445278	chr20	 38754922	 38754981	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17673_PI429285431	1.4381055	A	1.0950341	A	1.2684541744685	0	lncRNA	19402-1_{1..746}	lnc-TRPM1-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRPM1-1:13	chr15	 31521475	 31522220	-	lnc-TRPM1-1	lnc-TRPM1-1:13	XLOC_011413	linc-TRPM1	LOC283710	NA	chr15:31514970-31523050	inner
CUST_25911_PI429285431	0.89611095	A	0.9074977	A	0.992138371864405	0	lncRNA	27430-1_{1..410}	lnc-RP1-199H16.5.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP1-199H16.5.1-1:1	chr22	 39064575	 39064984	-	lnc-RP1-199H16.5.1-1	lnc-RP1-199H16.5.1-1:1	ENSG00000230912.1	RP3-508I15.10	CBY1	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90chr22:39054575-39069855"	NA	inner
CUST_47436_PI429285431	0.9055318	A	0.8942356	A	1.00786066323933	0	lncRNA	51470-2_{3001..3334}	"gi|345842381|ref|NR_002733.2| Homo sapiens DiGeorge syndrome critical region gene 5 (non-protein coding) (DGCR5), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|345842381|ref|NR_002733.2| Homo sapiens DiGeorge syndrome critical region gene 5 (non-protein coding) (DGCR5), transcript variant 1, non-coding RNA"	Chr22	 18961011	 18961344	+	26220	NR_002733.2	NA	NA	NA	NA	NA	inter
CUST_33713_PI429285431	1.311218	A	0.8804895	A	1.34791404465164	0	lncRNA	35273-1_{1..2342}	n340491|AK128486|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2952|NULL|0.1126520|-0.3489583	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n340491|AK128486|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2952|NULL|0.1126520|-0.3489583	chr5	 68263567	 68265908	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13034_PI429285431	0.9015582	A	1.3542374	A	0.73068464742858	0	lncRNA	14659-1_{1..326}	lnc-WRN-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRN-6:1	chr8	 31258415	 31258740	+	lnc-WRN-6	lnc-WRN-6:1	XLOC_006766	linc-NRG1-1	NA	NA	NA	inter
CUST_27484_PI429285431	2.3878543	A	2.57459	A	0.878591410387624	0	lncRNA	29054-1_{1..1142}	n324660|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319654|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319654|-1.1169200|-0.2614300	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324660|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319654|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319654|-1.1169200|-0.2614300	chr22	 41090474	 41091615	-	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60"	NA	inter
CUST_36463_PI429285431	0.8878117	A	0.8960604	A	0.994298751008676	0	lncRNA	37671-3_{6001..7167}	n344971|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_520|NULL|-1.3089600|-0.3202065	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344971|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_520|NULL|-1.3089600|-0.3202065	chr7	126992883	126994049	-	NA	NA	NA	NA	ZNF800	NA	chr7:127010353-127019008	inter
LNCA_33_P3371698	0.8756789	A	0.8801757	A	0.996887908386061	0	lncRNA	XR_132506	XR_132506	XR_132506	   730974	NA	LOC730974	slowmo homolog 2 (Drosophila) pseudogene	NA	THC2562533	NA	"PREDICTED: Homo sapiens hypothetical LOC730974 (LOC730974), miscRNA [XR_132506]"	chr5:42973415-42973474	hs|5p12	Agilent_HUMAN_G3V2	XR_132506	XR_132506	chr5	 42973415	 42973474	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_854_PI429285431	1.8810767	A	1.8436852	A	1.02625659985284	0	lncRNA	848-1_{1..640}	"transcript_id ""ENST00000427054.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427054.1"" | genecode_v17"	chr2	 42158739	 42159378	-	ENSG00000234362.1	ENST00000427054.1	AC104654.2	AC104654.2-001	LOC400950	NA	chr2:42162508-42170605	inter
LNCA_21_P0012045	4.094924	P	4.734496	P	0.641903352074305	0	lncRNA	ENST00000422118	NA	NA	NA	NA	XLOC_l2_007785	NA	ENST00000422118	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007785), lincRNA [TCONS_l2_00015611]"	chr2:224368935-224368994	hs|2q36.1	Agilent_HUMAN_G3V2	ENST00000422118	ENST00000422118	chr2	224368935	224368994	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10410_PI429285431	1.1254824	A	1.6986614	A	0.672134097976578	0	lncRNA	11937-1_{1..939}	lnc-ARHGAP26-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGAP26-4:4	chr5	141756199	141757137	+	lnc-ARHGAP26-4	lnc-ARHGAP26-4:4	XLOC_004587	linc-ARHGAP26-4	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-62.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40"	NA	inter
LNCA_21_P0009044	4.4541774	P	4.6785765	P	0.855951465624034	0	lncRNA	TCONS_00024694	NA	NA	NA	NA	XLOC_011974	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011974), lincRNA [TCONS_00024694]"	chr16:61263562-61263503	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024694	TCONS_00024694	chr16	 61263503	 61263562	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11776_PI429285431	2.3059273	A	0.999806	A	2.47275841954628	0	lncRNA	13355-1_{1..320}	lnc-MAN2A1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAN2A1-3:2	chr5	108812167	108812486	+	lnc-MAN2A1-3	lnc-MAN2A1-3:2	XLOC_004502	linc-MAN2A1-2	NA	NA	NA	inter
CUST_588_PI429285431	5.315214	P	4.791952	P	1.43720115513118	0	lncRNA	580-1_{1..577}	"transcript_id ""ENST00000441676.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000441676.1"" | genecode_v17"	chr1	222988403	222988979	+	ENSG00000228106.1	ENST00000441676.1	RP11-452F19.3	RP11-452F19.3-008	DISP1	NA	chr1:222988431-223020726	inner
CUST_42184_PI429285431	1.5611466	A	1.3621356	A	1.14791116620691	0	lncRNA	44245-1_{1..114}	ENST00000390226 ncrna:miRNA chromosome:GRCh37:1:156905923:156906036:-1 gene:ENSG00000211581 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390226 ncrna:miRNA chromosome:GRCh37:1:156905923:156906036:-1 gene:ENSG00000211581 gene_biotype:miRNA transcript_biotype:miRNA	chr1	156905923	156906036	-	ENSG00000211581	ENST00000390226	NA	NA	LRRC71	NA	chr1:156895923-156902880	inner
CUST_39604_PI429285431	8.094157	P	8.037034	P	1.04038896329014	0	lncRNA	40547-1_{1..3000}	n387634|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011keu.1||0.4887260|-0.1880477	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387634|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011keu.1||0.4887260|-0.1880477	chr7	 72712965	 72715964	+	NA	NA	NA	NA	TRIM50	NA	chr7:72726535-72726800	inner
CUST_43596_PI429285431	9.313221	P	8.14563	P	2.24636287820485	0	lncRNA	48359-2_{3001..5565}	"gi|410170852|ref|XR_171110.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170852|ref|XR_171110.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	XR_171110.1	NA	NA	NA	NA	NA	Unknown
CUST_7449_PI429285431	1.1988207	A	1.3422871	A	0.90534125350153	0	lncRNA	9092-1_{1..742}	lnc-LARP1B-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LARP1B-1:4	chr4	129391507	129392248	+	lnc-LARP1B-1	lnc-LARP1B-1:4	ENSG00000251432	RP11-420A23.1	NA	NA	NA	inter
LNCA_21_P0008492	0.903469	A	0.92437613	A	0.985612781333603	0	lncRNA	TCONS_00022882	NA	NA	NA	NA	XLOC_011136	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011136), lincRNA [TCONS_00022882]"	chr14:101937012-101936953	hs|14q32.31	Agilent_HUMAN_G3V2	TCONS_00022882	TCONS_00022882	chr14	101936953	101937012	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22229_PI429285431	2.9698315	A	2.7728405	A	1.14630503468315	0	lncRNA	23829-1_{1..536}	lnc-CCDC23-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC23-1:2	chr1	 43311928	 43312463	-	lnc-CCDC23-1	lnc-CCDC23-1:2	ENSG00000228192.2	RP11-342M1.3	ERMAP	"hg19_refFlat_ERMAP:range=chr1:43296120-433089035'pad=0,hg19_refFlat_ERMAP:range=chr1:43296120-433089035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30chr1:43301928-43310660"	NA	inter
CUST_25937_PI429285431	0.8881215	A	0.9014182	A	0.990825772282853	0	lncRNA	27456-1_{1..346}	lnc-OR4N4-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR4N4-1:13	chr15	 22370998	 22371343	+	lnc-OR4N4-1	lnc-OR4N4-1:13	ENSG00000259176.1	RP11-69H14.6	OR4M2	NA	chr15:22360998-22369561	inter
CUST_29117_PI429285431	4.1317124	P	4.518744	P	0.764701389158611	0	lncRNA	30852-1_{1..292}	n326617|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000022065|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000022065|-0.8921730|-0.1494857	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326617|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000022065|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000022065|-0.8921730|-0.1494857	chr1	 48317045	 48317336	-	NA	NA	NA	NA	LOC388630	NA	chr1:48307045-48330455	inner
CUST_48433_PI429285431	0.8881428	A	0.8990576	A	0.992462983987894	0	lncRNA	52285-1_{1..650}	hg19_lincRNAsTranscripts_TCONS_l2_00001539 range=chr1:152616701-152621742 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001539 range=chr1:152616701-152621742 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	152616701	152617350	-	NA	NA	NA	NA	LCE2D	NA	chr1:152616869-152631742	inter
CUST_35927_PI429285431	0.8863162	A	0.9066953	A	0.985973584104602	0	lncRNA	37293-1_{1..331}	n344568|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_116|NULL|-1.3173200|-0.3926077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344568|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_116|NULL|-1.3173200|-0.3926077	chr2	182227412	182227742	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22918_PI429285431	1.985213	A	1.6976928	A	1.22054052753787	0	lncRNA	24494-1_{1..436}	lnc-COMMD10-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COMMD10-2:6	chr5	115807965	115808400	+	lnc-COMMD10-2	lnc-COMMD10-2:6	ENSG00000248445.1	CTB-118N6.3	SEMA6A	NA	chr5:115797965-115818334	inner
CUST_38593_PI429285431	7.7451944	P	8.190727	P	0.73431318005946	0	lncRNA	39602-2_{3001..3599}	n383669|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002sti.1||2.4714300|-0.3961290	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383669|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002sti.1||2.4714300|-0.3961290	chr2	 89159675	 89160273	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39408_PI429285431	1.1390216	A	1.4283319	A	0.818293161247408	0	lncRNA	40368-1_{1..2015}	n386641|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010qrd.1||-0.0143927|-0.2120825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386641|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010qrd.1||-0.0143927|-0.2120825	chr10	112628647	112630661	-	NA	NA	NA	NA	PDCD4	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40chr10:112631553-112640662"	NA	inter
CUST_36306_PI429285431	2.8495479	P	2.3934057	P	1.37186850087146	0	lncRNA	37538-1_{1..459}	n344833|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_382|NULL|-1.3331600|-0.3682343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344833|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_382|NULL|-1.3331600|-0.3682343	chr5	 86415159	 86415617	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12844_PI429285431	7.9666066	P	7.9790697	P	0.991398444266229	0	lncRNA	14470-3_{6001..7027}	lnc-ARFGEF2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ARFGEF2-2:2	chr20	 47106198	 47107224	+	lnc-ARFGEF2-2	lnc-ARFGEF2-2:2	XLOC_013552	linc-ARFGEF2-3	NA	NA	NA	inter
CUST_25071_PI429285431	1.282357	A	1.792656	A	0.702076916641852	0	lncRNA	26608-1_{1..792}	lnc-ITSN2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITSN2-2:2	chr2	 24397377	 24398168	-	lnc-ITSN2-2	lnc-ITSN2-2:2	ENSG00000232642.1	AC008073.7	LOC375190	NA	chr2:24387377-24392507	inter
CUST_45093_PI429285431	3.1567373	P	3.4299297	P	0.827486453870101	0	lncRNA	49577-1_{1..2161}	"gi|338221719|ref|NR_040003.1| Homo sapiens transmembrane protein 139 (TMEM139), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338221719|ref|NR_040003.1| Homo sapiens transmembrane protein 139 (TMEM139), transcript variant 7, non-coding RNA"	Chr7	142982040	142984200	+	135932	NR_040003.1	NA	NA	NA	NA	NA	inter
CUST_2350_PI429285431	4.217912	P	4.1353445	P	1.05890084328353	0	lncRNA	2342-1_{1..204}	"transcript_id ""ENST00000509456.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509456.1"" | genecode_v17"	chr5	124255640	124255843	+	ENSG00000249423.1	ENST00000509456.1	RP11-284A20.1	RP11-284A20.1-001	NA	NA	NA	inter
LNCA_21_P0014798	5.5777183	P	5.849268	P	0.828429193764322	0	lncRNA	XR_132599	XR_132599	XR_132599	NA	NA	LOC100128108	uncharacterized LOC100128108	NA	THC2538298	NA	"PREDICTED: Homo sapiens hypothetical LOC100128108, transcript variant 1 (LOC100128108), miscRNA [XR_132599]"	chr15:102277482-102277423	hs|15q26.3	Agilent_HUMAN_G3V2	XR_132599	XR_132599	chr15	102277423	102277482	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008743	0.8880165	A	0.901331	A	0.990813547530258	0	lncRNA	TCONS_00023686	NA	NA	NA	NA	XLOC_011485	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011485), lincRNA [TCONS_00023686]"	chr15:58177289-58177230	hs|15q21.3	Agilent_HUMAN_G3V2	TCONS_00023686	TCONS_00023686	chr15	 58177230	 58177289	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45231_PI429285431	10.818991	P	11.080732	P	0.834080768834781	0	lncRNA	49688-1_{1..938}	"gi|397139282|ref|XR_158843.1| PREDICTED: Homo sapiens uncharacterized LOC100996348 (LOC100996348), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139282|ref|XR_158843.1| PREDICTED: Homo sapiens uncharacterized LOC100996348 (LOC100996348), misc_RNA"	Chr8	 86368730	 86369667	-	100996348	XR_158843.2	NA	NA	NA	NA	NA	inter
CUST_11766_PI429285431	3.1582377	P	3.7972784	P	0.642139788775648	0	lncRNA	13346-1_{1..424}	lnc-TPBG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPBG-1:1	chr6	 83125163	 83125586	+	lnc-TPBG-1	lnc-TPBG-1:1	XLOC_005369	linc-DOPEY1-2	NA	NA	NA	inter
CUST_23386_PI429285431	0.905202	A	1.4138193	A	0.702895780729781	0	lncRNA	24954-1_{1..657}	lnc-HDDC3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HDDC3-4:1	chr15	 91260212	 91260868	-	lnc-HDDC3-4	lnc-HDDC3-4:1	ENSG00000259736.1	RP11-387D10.2	BLM	"hg19_refFlat_CRTC3:range=chr15:91073304-911853725'pad=0,hg19_refFlat_CRTC3:range=chr15:91073304-911853725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90chr15:91260579-91270372"	NA	inter
CUST_5942_PI429285431	1.1684318	A	0.91206086	A	1.19447026503034	0	lncRNA	5871-1_{1..390}	"transcript_id ""ENST00000591754.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591754.1"" | genecode_v17"	chr17	 66624244	 66624633	+	ENSG00000267659.1	ENST00000591754.1	RP11-118B18.1	RP11-118B18.1-002	NA	NA	NA	inter
CUST_5159_PI429285431	1.1146536	A	0.9844387	A	1.09445671646859	0	lncRNA	5099-1_{1..425}	"transcript_id ""ENST00000567456.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567456.1"" | genecode_v17"	chr15	 43031316	 43031740	+	ENSG00000246283.2	ENST00000567456.1	CTD-2036P10.3	CTD-2036P10.3-002	TTBK2	NA	chr15:43036536-43044395	inter
CUST_51113_PI429285431	0.90391326	A	0.9195346	A	0.989230522788185	0	lncRNA	54750-1_{1..2168}	hg19_lincRNAsTranscripts_TCONS_l2_00006991 range=chr13:106359046-106417207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006991 range=chr13:106359046-106417207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	106359046	106361213	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38327_PI429285431	1.4156127	A	0.909603	A	1.42011690670662	0	lncRNA	39373-1_{1..1344}	n382043|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001veg.1||0.1638090|-0.2368512	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382043|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001veg.1||0.1638090|-0.2368512	chr13	 50656413	 50657756	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34382_PI429285431	0.88619035	A	0.89818597	A	0.991719741579636	0	lncRNA	35868-1_{1..3000}	n341251|AK130384|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3719|NULL|-0.9595150|-0.3041400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341251|AK130384|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3719|NULL|-0.9595150|-0.3041400	chr7	 55280604	 55283603	+	NA	NA	NA	NA	EGFR	NA	chr7:55270604-55275031	inter
CUST_6472_PI429285431	2.7080817	P	2.9207191	P	0.862958209034839	0	lncRNA	6413-1_{1..570}	"transcript_id ""ENST00000604749.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604749.1"" | genecode_v17"	chr19	 35341532	 35342101	-	ENSG00000271109.1	ENST00000604749.1	CTC-523E23.11	CTC-523E23.11-002	NA	NA	NA	inter
CUST_15436_PI429285431	0.8729791	A	0.8753589	A	0.998351808102274	0	lncRNA	17124-1_{1..361}	lnc-CYP7B1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CYP7B1-5:1	chr8	 66096317	 66096677	-	lnc-CYP7B1-5	lnc-CYP7B1-5:1	XLOC_007104	linc-CYP7B1-1	NA	NA	NA	inter
LNCA_21_P0010122	0.876735	A	0.87800384	A	0.999120893771914	0	lncRNA	TCONS_00028704	NA	NA	NA	NA	XLOC_013795	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013795), lincRNA [TCONS_00028704]"	chr20:51039520-51039461	hs|20q13.2	Agilent_HUMAN_G3V2	TCONS_00028704	TCONS_00028704	chr20	 51039461	 51039520	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31583_PI429285431	1.0809872	A	1.7389231	A	0.633784419898795	0	lncRNA	33340-1_{1..3000}	n338087|AK124503|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|474|NULL|-0.9343280|-0.2892950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338087|AK124503|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|474|NULL|-0.9343280|-0.2892950	chr1	 92864530	 92867529	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0,hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80"	NA	inter
CUST_48966_PI429285431	2.134292	A	2.8626745	A	0.603580248022768	0	lncRNA	52805-1_{1..1097}	hg19_lincRNAsTranscripts_TCONS_l2_00019674 range=chr3:193727768-193745011 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019674 range=chr3:193727768-193745011 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	193727768	193728864	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28908_PI429285431	0.9279195	A	0.8775221	A	1.0355501337698	0	lncRNA	30625-1_{1..1923}	n326332|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000085234|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000085234|0.3138640|-0.3399252	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326332|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000085234|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000085234|0.3138640|-0.3399252	chr1	168834618	168836540	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_6219_PI429285431	1.6845036	A	1.2616111	A	1.34061269435329	0	lncRNA	6145-1_{1..564}	"transcript_id ""ENST00000591900.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591900.1"" | genecode_v17"	chr18	 56749156	 56749719	+	ENSG00000267215.1	ENST00000591900.1	RP11-685A21.1	RP11-685A21.1-001	NA	NA	NA	inter
LNCA_21_P0014587	2.4242098	A	3.1864676	P	0.58957293395853	0	lncRNA	XR_110409	XR_110409	XR_110409	NA	Hs.145227	LOC100507058	uncharacterized LOC100507058	ENST00000417931	THC2649757	NA	"PREDICTED: Homo sapiens hypothetical LOC100507058 (LOC100507058), miscRNA [XR_110409]"	chr10:62786047-62786106	hs|10q21.2	Agilent_HUMAN_G3V2	XR_110409	XR_110409	chr10	 62786047	 62786106	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009801	1.4934244	A	3.38973	P	0.268630384346445	0	lncRNA	TCONS_00027726	NA	NA	NA	NA	XLOC_013297	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013297), lincRNA [TCONS_00027726]"	chr19:32456612-32456553	hs|19q13.11	Agilent_HUMAN_G3V2	TCONS_00027726	TCONS_00027726	chr19	 32456553	 32456612	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43083_PI429285431	3.691724	P	3.8494806	P	0.896417923294379	0	lncRNA	47284-1_{1..100}	ENST00000517050 ncrna:snRNA chromosome:GRCh37:22:41564221:41564320:1 gene:ENSG00000252859 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517050 ncrna:snRNA chromosome:GRCh37:22:41564221:41564320:1 gene:ENSG00000252859 gene_biotype:snRNA transcript_biotype:snRNA	chr22	 41564221	 41564320	+	ENSG00000252859	ENST00000517050	NA	NA	EP300	NA	chr22:41554221-41574320	inner
CUST_21825_PI429285431	0.8909597	A	1.0150139	A	0.917605408534187	0	lncRNA	23435-1_{1..576}	lnc-RP1-170O19.17.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP1-170O19.17.1-2:3	chr7	 27282087	 27282662	-	lnc-RP1-170O19.17.1-2	lnc-RP1-170O19.17.1-2:3	ENSG00000253405.1	EVX1-AS	EVX1	NA	chr7:27282164-27286192	inner
CUST_38539_PI429285431	7.9305997	P	7.850493	P	1.05709621924261	0	lncRNA	39549-1_{1..3000}	n383242|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jxg.1||2.7885800|-0.1503144	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383242|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jxg.1||2.7885800|-0.1503144	chr17	 77906142	 77909141	-	NA	NA	NA	NA	TBC1D16	NA	chr17:77913819-77922277	inner
CUST_46629_PI429285431	6.337982	P	6.182606	P	1.11371183970714	0	lncRNA	50805-1_{1..898}	"gi|397139625|ref|XR_158897.1| PREDICTED: Homo sapiens uncharacterized LOC100996366 (LOC100996366), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139625|ref|XR_158897.1| PREDICTED: Homo sapiens uncharacterized LOC100996366 (LOC100996366), misc_RNA"	NA	NA	NA	NA	NA	XR_158897.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20"	NA	Unknown
CUST_28323_PI429285431	8.757105	P	8.845708	P	0.940432954710923	0	lncRNA	29968-1_{1..376}	n325628|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045816|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045816|-1.0524700|-0.3106907	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325628|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045816|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045816|-1.0524700|-0.3106907	chr13	111602299	111602674	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35734_PI429285431	2.966557	P	2.558177	A	1.32719467223568	0	lncRNA	37151-1_{1..1740}	n342902|BC044618|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5410|NULL|-1.2254300|-0.3239573	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342902|BC044618|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5410|NULL|-1.2254300|-0.3239573	chr12	104343979	104345718	-	NA	NA	NA	NA	HSP90B1	NA	chr12:104333979-104341703	inner
CUST_29379_PI429285431	6.584585	P	8.067413	P	0.3577867832739	0	lncRNA	31131-1_{1..214}	n332649|AB038673|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059240|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059240|0.6978350|-0.2883096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332649|AB038673|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000059240|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000059240|0.6978350|-0.2883096	chr11	 27679971	 27680184	-	NA	NA	NA	NA	BDNF	NA	chr11:27676440-27731764	inter
CUST_33226_PI429285431	2.2898078	A	2.5180018	A	0.853702908770166	0	lncRNA	34815-1_{1..888}	n339925|BC040211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2374|NULL|-1.1526600|-0.2569992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339925|BC040211|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2374|NULL|-1.1526600|-0.2569992	chr4	 39444592	 39445479	-	NA	NA	NA	NA	KLB	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_KLB:range=chr4:39408570-394503065'pad=0,hg19_refFlat_KLB:range=chr4:39408570-394503065'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20chr4:39434592-39453153"	NA	inner
CUST_47111_PI429285431	5.2647796	P	5.7358365	P	0.721435889384425	0	lncRNA	51193-1_{1..1883}	"gi|410170748|ref|XR_109511.3| PREDICTED: Homo sapiens uncharacterized LOC728485 (LOC728485), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410170748|ref|XR_109511.3| PREDICTED: Homo sapiens uncharacterized LOC728485 (LOC728485), misc_RNA"	Chr19	 37264020	 37265902	+	728485	XR_109511.4	NA	NA	NA	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-32.60;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70"	NA	inter
CUST_16366_PI429285431	0.8917328	A	0.9063599	A	0.9899124905693	0	lncRNA	18064-1_{1..1427}	lnc-MYCT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYCT1-1:1	chr6	153009012	153010438	+	lnc-MYCT1-1	lnc-MYCT1-1:1	XLOC_005505	linc-MYCT1-1	MYCT1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.50chr6:153019030-153020302"	NA	inter
CUST_4485_PI429285431	2.239594	A	2.610414	A	0.773342818707369	0	lncRNA	4434-1_{1..458}	"transcript_id ""ENST00000535118.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535118.1"" | genecode_v17"	chr12	127221553	127222010	+	ENSG00000189238.4	ENST00000535118.1	RP11-173C20.1	RP11-173C20.1-007	NA	NA	NA	inter
CUST_7471_PI429285431	1.2801201	A	2.4107342	A	0.456721274985814	0	lncRNA	9113-1_{1..1945}	lnc-ZBTB48-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZBTB48-1:1	chr1	  6663514	  6665458	+	lnc-ZBTB48-1	lnc-ZBTB48-1:1	ENSG00000250449	ENST00000505933	KLHL21	"hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_KLHL21:range=chr1:6653425-66628775'pad=0,hg19_refFlat_KLHL21:range=chr1:6653425-66628775'pad=0 3'pad=0 strand=- repeatMasking=none,-105.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70chr1:6653514-6662929"	NA	inter
CUST_30235_PI429285431	0.904654	A	1.1459866	A	0.845963545045433	0	lncRNA	32010-1_{1..678}	n335103|AL162671|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250329|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250329|0.0955451|-0.0747966	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335103|AL162671|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250329|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250329|0.0955451|-0.0747966	chr2	 45169058	 45169735	-	NA	NA	NA	NA	SIX3	"hg19_refFlat_SIX3:range=chr2:45169244-451718995'pad=0,hg19_refFlat_SIX3:range=chr2:45169244-451718995'pad=0 3'pad=0 strand=+ repeatMasking=none,-112.40chr2:45169037-45173216"	NA	inner
CUST_21295_PI429285431	5.0882463	P	5.734645	P	0.638873099650662	0	lncRNA	22920-1_{1..791}	lnc-RP11-664D7.4.1-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-664D7.4.1-3:7	chr8	 69913619	 69914409	-	lnc-RP11-664D7.4.1-3	lnc-RP11-664D7.4.1-3:7	ENSG00000253658.1	RP11-600K15.1	NA	NA	NA	inter
CUST_15111_PI429285431	6.0707355	P	6.1176476	P	0.968006003415625	0	lncRNA	16774-3_{6001..6659}	lnc-AC069257.9.1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC069257.9.1-5:2	chr3	195380753	195381411	+	lnc-AC069257.9.1-5	lnc-AC069257.9.1-5:2	XLOC_002996	linc-MUC20-2	NA	"hg19_refFlat_PPP4R2:range=chr3:73046189-731148735'pad=0,hg19_refFlat_PPP4R2:range=chr3:73046189-731148735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	inter
CUST_51105_PI429285431	1.1373258	A	1.1206057	A	1.01165690851124	0	lncRNA	54743-1_{1..510}	hg19_lincRNAsTranscripts_TCONS_l2_00006930 range=chr13:78572070-78627601 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006930 range=chr13:78572070-78627601 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 78572070	 78572579	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32750_PI429285431	0.88651884	A	0.89749926	A	0.992417843512539	0	lncRNA	34387-1_{1..564}	n339378|AF147413|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1810|NULL|-0.5565130|-0.2132609	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339378|AF147413|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1810|NULL|-0.5565130|-0.2132609	chr3	 57835757	 57836320	-	NA	NA	NA	NA	SLMAP	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60chr3:57825757-57846311"	NA	inner
CUST_20383_PI429285431	1.0401708	A	0.9101188	A	1.09433314431445	0	lncRNA	22025-1_{1..593}	lnc-SLA2-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLA2-3:5	chr20	 35154124	 35154716	-	lnc-SLA2-3	lnc-SLA2-3:5	ENSG00000259729.1	RP5-977B1.12	DLGAP4	"hg19_refFlat_DLGAP4:range=chr20:35090972-351554345'pad=0,hg19_refFlat_DLGAP4:range=chr20:35090972-351554345'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20;hg19_refFlat_DLGAP4:range=chr20:35060121-351554345'pad=0,hg19_refFlat_DLGAP4:range=chr20:35060121-351554345'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20;hg19_refFlat_DLGAP4:range=chr20:35128624-351554345'pad=0,hg19_refFlat_DLGAP4:range=chr20:35128624-351554345'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20chr20:35144124-35157040"	NA	inner
LNCA_21_P0007685	2.2254243	A	2.8160775	A	0.664042184753332	0	lncRNA	TCONS_00020709	NA	NA	NA	NA	XLOC_010007	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010007), lincRNA [TCONS_00020709]"	chr12:9211300-9210365	hs|12p13.31	Agilent_HUMAN_G3V2	TCONS_00020709	TCONS_00020709	chr12	  9210365	  9211300	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010524	1.0652508	A	2.391793	A	0.398722742006596	0	lncRNA	TCONS_l2_00000172	NA	NA	NA	NA	XLOC_l2_000116	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000116), lincRNA [TCONS_l2_00000172]"	chr1:26554541-26554600	hs|1p36.11	Agilent_HUMAN_G3V2	TCONS_l2_00000172	TCONS_l2_00000172	chr1	 26554541	 26554600	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40978_PI429285431	0.8852889	A	0.89527583	A	0.99310149233336	0	lncRNA	41649-1_{1..3000}	n411097|NR_038921|lncRNA|Homosapiens||RefGeneNoncode|NR_038921||-1.2774000|-0.3500198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n411097|NR_038921|lncRNA|Homosapiens||RefGeneNoncode|NR_038921||-1.2774000|-0.3500198	chr10	 22541000	 22543999	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13563_PI429285431	2.906798	A	2.710469	A	1.1457791578811	0	lncRNA	15204-1_{1..326}	lnc-C12orf50-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C12orf50-1:1	chr12	 88064102	 88064427	-	lnc-C12orf50-1	lnc-C12orf50-1:1	XLOC_010144	linc-MGAT4C-1	NA	NA	NA	inter
CUST_48804_PI429285431	6.8741207	P	6.8881617	P	0.990314727744793	0	lncRNA	52642-1_{1..1585}	hg19_lincRNAsTranscripts_TCONS_l2_00014323 range=chr2:241871930-241874981 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014323 range=chr2:241871930-241874981 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	241871930	241873514	+	NA	NA	NA	NA	LOC728763	NA	chr2:241868593-241884981	inter
CUST_46023_PI429285431	2.7687476	A	2.3761506	A	1.31275437160979	0	lncRNA	50305-1_{1..638}	"gi|341915628|ref|XR_110375.2| PREDICTED: Homo sapiens uncharacterized LOC100288798 (LOC100288798), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915628|ref|XR_110375.2| PREDICTED: Homo sapiens uncharacterized LOC100288798 (LOC100288798), misc_RNA"	Chr12	 46777438	 46778075	+	100288798	XR_110375.3	NA	NA	NA	NA	NA	inter
LNCA_21_P0007938	0.8957413	A	0.91218346	A	0.988667861081573	0	lncRNA	ENST00000435843	NA	NA	NA	NA	XLOC_010389	NA	ENST00000435843	NA	NA	"BROAD Institute lincRNA (XLOC_010389), lincRNA [TCONS_00021550]"	chr13:50640651-50640710	hs|13q14.2	Agilent_HUMAN_G3V2	ENST00000435843	ENST00000435843	chr13	 50640651	 50640710	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8589_PI429285431	1.4192299	A	1.9490999	A	0.692617142374168	0	lncRNA	10145-1_{1..3000}	lnc-AC005609.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC005609.1-1:1	chr5	140248465	140251464	-	lnc-AC005609.1-1	lnc-AC005609.1-1:1	ENSG00000249608	ENST00000512753	PCDHA4	"hg19_refFlat_PCDHA10:range=chr5:140235634-1402381685'pad=0,hg19_refFlat_PCDHA10:range=chr5:140235634-1402381685'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90;hg19_refFlat_PCDHA8:range=chr5:140220907-1403895225'pad=0,hg19_refFlat_PCDHA8:range=chr5:140220907-1403895225'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.50;hg19_refFlat_PCDHA3:range=chr5:140180783-1403895225'pad=0,hg19_refFlat_PCDHA3:range=chr5:140180783-1403895225'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.60;hg19_refFlat_PCDHA11:range=chr5:140248689-1403895225'pad=0,hg19_refFlat_PCDHA11:range=chr5:140248689-1403895225'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90;hg19_refFlat_PCDHA10:range=chr5:140235634-1403895225'pad=0,hg19_refFlat_PCDHA10:range=chr5:140235634-1403895225'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90;hg19_refFlat_PCDHA8:range=chr5:140220907-1402233515'pad=0,hg19_refFlat_PCDHA8:range=chr5:140220907-1402233515'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.50;hg19_refFlat_PCDHA2:range=chr5:140174550-1401770245'pad=0,hg19_refFlat_PCDHA2:range=chr5:140174550-1401770245'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10;hg19_refFlat_PCDHA7:range=chr5:140213969-1403895225'pad=0,hg19_refFlat_PCDHA7:range=chr5:140213969-1403895225'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90;hg19_refFlat_PCDHA7:range=chr5:140213969-1402163385'pad=0,hg19_refFlat_PCDHA7:range=chr5:140213969-1402163385'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90;hg19_refFlat_PCDHA6:range=chr5:140207677-1403895225'pad=0,hg19_refFlat_PCDHA6:range=chr5:140207677-1403895225'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.50;hg19_refFlat_PCDHA2:range=chr5:140174550-1403895225'pad=0,hg19_refFlat_PCDHA2:range=chr5:140174550-1403895225'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10;hg19_refFlat_PCDHA3:range=chr5:140180783-1401832575'pad=0,hg19_refFlat_PCDHA3:range=chr5:140180783-1401832575'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.60;hg19_refFlat_PCDHA9:range=chr5:140228081-1402306095'pad=0,hg19_refFlat_PCDHA9:range=chr5:140228081-1402306095'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90;hg19_refFlat_PCDHA9:range=chr5:140228081-1403895225'pad=0,hg19_refFlat_PCDHA9:range=chr5:140228081-1403895225'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90;hg19_refFlat_PCDHA11:range=chr5:140248689-1402511215'pad=0,hg19_refFlat_PCDHA11:range=chr5:140248689-1402511215'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90;hg19_refFlat_PCDHA12:range=chr5:140255058-1402574365'pad=0,hg19_refFlat_PCDHA12:range=chr5:140255058-1402574365'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.50;hg19_refFlat_PCDHA12:range=chr5:140255058-1403895225'pad=0,hg19_refFlat_PCDHA12:range=chr5:140255058-1403895225'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.50;hg19_refFlat_PCDHA6:range=chr5:140207677-1402100885'pad=0,hg19_refFlat_PCDHA6:range=chr5:140207677-1402100885'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.50chr5:140238465-140259953"	NA	inner
CUST_27080_PI429285431	0.8890414	A	0.898874	A	0.993207733463272	0	lncRNA	28612-2_{3001..4975}	n324190|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141831|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141831|-0.5360430|-0.3446831	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324190|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141831|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141831|-0.5360430|-0.3446831	chr7	126790074	126792048	-	NA	NA	NA	NA	GRM8	NA	chr7:126777074-126802049	inter
LNCA_21_P0002884	6.022027	P	5.893068	P	1.09350438070443	0	lncRNA	ENST00000506934	NA	NA	NA	NA	XLOC_003269	NA	ENST00000506934	THC2728150	NA	"BROAD Institute lincRNA (XLOC_003269), lincRNA [TCONS_00005838]"	chr3:139407459-139407400	hs|3q23	Agilent_HUMAN_G3V2	ENST00000506934	ENST00000506934	chr3	139407400	139407459	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41556_PI429285431	4.578767	P	5.3777943	P	0.574736548221848	0	lncRNA	42856-1_{1..100}	ENST00000385210 ncrna:miRNA chromosome:GRCh37:22:38240279:38240378:-1 gene:ENSG00000207945 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385210 ncrna:miRNA chromosome:GRCh37:22:38240279:38240378:-1 gene:ENSG00000207945 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 38240279	 38240378	-	ENSG00000207945	ENST00000385210	NA	NA	EIF3L	NA	chr22:38245379-38250378	inter
CUST_30752_PI429285431	3.6335425	P	4.015421	P	0.767437676871298	0	lncRNA	32537-1_{1..549}	n336571|Z16418|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326542|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326542|1.7525800|-0.2293519	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336571|Z16418|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326542|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326542|1.7525800|-0.2293519	chr14	 55310757	 55311305	-	NA	NA	NA	NA	GCH1	NA	chr14:55308723-55369542	inner
LNCA_21_P0011692	5.6773014	P	5.6794066	P	0.998541850689761	0	lncRNA	TCONS_l2_00012516	NA	NA	NA	NA	XLOC_l2_006718	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006718), lincRNA [TCONS_l2_00012516]"	chr19:37746870-37753210	hs|19q13.12	Agilent_HUMAN_G3V2	TCONS_l2_00012516	TCONS_l2_00012516	chr19	 37746870	 37753210	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18490_PI429285431	0.89491683	A	0.89678496	A	0.998705948964649	0	lncRNA	20208-1_{1..1898}	lnc-CLLU1.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CLLU1.1-2:2	chr12	 92560895	 92562792	+	lnc-CLLU1.1-2	lnc-CLLU1.1-2:2	ENSG00000245904	RP11-796E2.4	NA	NA	NA	inter
CUST_39779_PI429285431	1.8900567	A	1.2888567	A	1.51697782857935	0	lncRNA	40694-1_{1..1539}	n405993|NR_003290|lncRNA|Homosapiens||RefGeneNoncode|NR_003290||1.8835900|-0.2001828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405993|NR_003290|lncRNA|Homosapiens||RefGeneNoncode|NR_003290||1.8835900|-0.2001828	chr12	132568827	132570365	+	NA	NA	NA	NA	EP400	NA	chr12:132558827-132565011	inter
CUST_32609_PI429285431	1.4604049	A	1.8199177	A	0.77942774899074	0	lncRNA	34268-2_{3001..5389}	n339229|BC051706|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1661|NULL|-1.1157600|-0.3236485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339229|BC051706|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1661|NULL|-1.1157600|-0.3236485	chr3	  3419952	  3422340	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29824_PI429285431	4.2769475	P	10.215022	P	0.0163102815900027	0	lncRNA	31587-1_{1..243}	n333545|D16366|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000100583|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000100583|-1.1234600|-0.2712278	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333545|D16366|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000100583|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000100583|-1.1234600|-0.2712278	chr19	 45978196	 45978438	+	NA	NA	NA	NA	FOSB	NA	chr19:45971253-45978437	inner
CUST_31632_PI429285431	3.3247194	P	3.8485434	P	0.695525830590871	0	lncRNA	33384-2_{3001..5396}	n338152|AL137758|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|541|NULL|-0.8219640|-0.3696201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338152|AL137758|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|541|NULL|-0.8219640|-0.3696201	chr15	 97307774	 97310169	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27344_PI429285431	1.0803301	A	1.3049012	A	0.855849424047565	0	lncRNA	28905-1_{1..446}	n324501|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040880|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040880|-0.9963340|-0.2534362	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324501|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040880|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040880|-0.9963340|-0.2534362	chr6	 50663278	 50663723	-	NA	NA	NA	NA	TFAP2D	NA	chr6:50681257-50722537	inner
CUST_22433_PI429285431	3.190135	P	1.9931878	A	2.29254046713305	0	lncRNA	24021-1_{1..1411}	lnc-EEF1B2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EEF1B2-1:1	chr2	206986841	206988251	+	lnc-EEF1B2-1	lnc-EEF1B2-1:1	ENSG00000231955.1	AC007383.4	NDUFS1	"hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_GCSH:range=chr16:81116471-811298835'pad=0,hg19_refFlat_GCSH:range=chr16:81116471-811298835'pad=0 3'pad=0 strand=- repeatMasking=none,-94.10chr2:206987803-206997047"	NA	inter
LNCA_21_P0000948	2.7240825	A	2.530692	A	1.14344779508957	0	lncRNA	ENST00000424487	NA	NA	NA	NA	XLOC_000048	NA	ENST00000424487	NA	NA	"BROAD Institute lincRNA (XLOC_000048), lincRNA [TCONS_00000152]"	chr1:10519308-10519367	hs|1p36.22	Agilent_HUMAN_G3V2	ENST00000424487	ENST00000424487	chr1	 10519308	 10519367	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43334_PI429285431	1.3309759	A	1.9087355	A	0.67000343631532	0	lncRNA	48161-2_{3001..3659}	ENST00000448262 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:30014128:30018360:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>ENST00000448262 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:30014128:30018360:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	chrHSCHR6_MHC_QBL	 30017128	 30017786	-	ENSG00000235814	ENST00000448262	NA	NA	NA	NA	NA	Unknown
CUST_34066_PI429285431	0.8953769	A	0.89566284	A	0.999801821135217	0	lncRNA	35595-1_{1..663}	n340887|Z83936|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3352|NULL|-1.0581900|-0.1343953	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340887|Z83936|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3352|NULL|-1.0581900|-0.1343953	chr6	 25297377	 25298039	+	NA	NA	NA	NA	LRRC16A	NA	chr6:25287377-25308038	inner
CUST_29745_PI429285431	5.0592804	P	2.934904	A	4.36014586513747	0	lncRNA	31507-1_{1..910}	n333420|BC012468|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087866|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087866|2.6530600|-0.3103834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333420|BC012468|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087866|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087866|2.6530600|-0.3103834	chr13	 73350066	 73350975	-	NA	NA	NA	NA	PIBF1	NA	chr13:73356230-73366066	inner
CUST_12718_PI429285431	1.0910887	A	0.92050517	A	1.12551363158122	0	lncRNA	14337-1_{1..3000}	lnc-CPXM2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPXM2-2:1	chr10	125722711	125725710	-	lnc-CPXM2-2	lnc-CPXM2-2:1	XLOC_008979	linc-CPXM2-2	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60"	NA	inter
CUST_44290_PI429285431	0.89178705	A	2.037833	A	0.451861971291527	0	lncRNA	48923-1_{1..1222}	"gi|384229043|ref|NR_047568.1| Homo sapiens long intergenic non-protein coding RNA 578 (LINC00578), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|384229043|ref|NR_047568.1| Homo sapiens long intergenic non-protein coding RNA 578 (LINC00578), non-coding RNA"	Chr3	177159709	177160930	+	100505566	NR_047568.1	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-21.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00"	NA	inter
CUST_18493_PI429285431	6.0304747	P	6.008771	P	1.01515758689055	0	lncRNA	20211-1_{1..3000}	lnc-TRIM26-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRIM26-2:8	chr6	 30293786	 30296785	-	lnc-TRIM26-2	lnc-TRIM26-2:8	ENSG00000231074	HCG18	TRIM39-RPP21	NA	chr6:30297088-30304111	inter
LNCA_21_P0009106	0.8761886	A	1.4973081	A	0.650166217068596	0	lncRNA	TCONS_00024856	NA	NA	NA	NA	XLOC_011736	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011736), lincRNA [TCONS_00024856]"	chr16:56677672-56677731	hs|16q12.2	Agilent_HUMAN_G3V2	TCONS_00024856	TCONS_00024856	chr16	 56677672	 56677731	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32056_PI429285431	0.90463644	A	1.5495856	A	0.639515326507635	0	lncRNA	33771-1_{1..1962}	n338620|BC034303|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1026|NULL|-1.1122100|-0.2955389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n338620|BC034303|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1026|NULL|-1.1122100|-0.2955389	chr1	247687980	247689941	-	NA	NA	NA	NA	OR2C3	NA	chr1:247693434-247697141	inter
LNCA_21_P0014175	2.402686	A	2.341109	A	1.0436058959986	0	lncRNA	XR_108708	XR_108708	XR_108708	NA	Hs.87856	LOC100506302	uncharacterized LOC100506302	NA	THC2581778	NA	"PREDICTED: Homo sapiens hypothetical LOC100506302 (LOC100506302), miscRNA [XR_108708]"	chr7:155434693-155434634	hs|7q36.3	Agilent_HUMAN_G3V2	XR_108708	XR_108708	chr7	155434634	155434693	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21354_PI429285431	0.9063885	A	1.1141899	A	0.865855750178789	0	lncRNA	22978-1_{1..447}	lnc-ZCRB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZCRB1-1:1	chr12	 42883525	 42883971	-	lnc-ZCRB1-1	lnc-ZCRB1-1:1	ENSG00000258068.1	RP11-328C8.5	PRICKLE1	NA	chr12:42873525-42893821	inner
CUST_13587_PI429285431	1.5032388	A	0.9185673	A	1.49969747101792	0	lncRNA	15227-2_{3001..4555}	lnc-FGFR1OP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGFR1OP-1:1	chr6	167319544	167321098	+	lnc-FGFR1OP-1	lnc-FGFR1OP-1:1	XLOC_005539	linc-FGFR1OP-1	NA	NA	NA	inter
CUST_32741_PI429285431	7.396913	P	7.719843	P	0.799444618706296	0	lncRNA	34380-1_{1..3000}	n339368|D87433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1800|NULL|17.7564000|-0.0912541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339368|D87433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1800|NULL|17.7564000|-0.0912541	chr3	 52529370	 52532369	+	NA	NA	NA	NA	NT5DC2	NA	chr3:52558385-52568509	inner
LNCA_21_P0008867	1.8723845	A	0.8800041	A	1.98946483673007	0	lncRNA	TCONS_00024207	NA	NA	NA	NA	XLOC_011590	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011590), lincRNA [TCONS_00024207]"	chr15:95127251-95127192	hs|15q26.2	Agilent_HUMAN_G3V2	TCONS_00024207	TCONS_00024207	chr15	 95127192	 95127251	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35651_PI429285431	0.87986064	A	0.8842978	A	0.996929119884049	0	lncRNA	37068-1_{1..840}	n342800|BC008645|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5303|NULL|-1.1498200|-0.3361735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342800|BC008645|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5303|NULL|-1.1498200|-0.3361735	chr7	 26223683	 26224522	-	NA	NA	NA	NA	NFE2L3	"hg19_refFlat_NFE2L3:range=chr7:26192119-262254035'pad=0,hg19_refFlat_NFE2L3:range=chr7:26192119-262254035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10chr7:26213683-26226757"	NA	inner
CUST_24277_PI429285431	0.9022158	A	0.8950917	A	1.00495026209039	0	lncRNA	25828-1_{1..501}	lnc-HDDC2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HDDC2-6:1	chr6	126139956	126140456	-	lnc-HDDC2-6	lnc-HDDC2-6:1	ENSG00000232131.1	RP1-293L8.5	NCOA7	NA	chr6:126129956-126150004	inner
CUST_19989_PI429285431	4.084459	P	4.4061055	P	0.800156164601919	0	lncRNA	21642-1_{1..951}	lnc-C17orf61-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf61-1:4	chr17	  7306629	  7307579	-	lnc-C17orf61-1	lnc-C17orf61-1:4	ENSG00000262481.1	C17orf61-PLSCR3	C17orf61	NA	chr17:7306293-7307450	inner
CUST_47178_PI429285431	8.707498	P	8.910408	P	0.868796381798751	0	lncRNA	51255-1_{1..2418}	"gi|294774553|ref|NR_033500.1| Homo sapiens protein phosphatase 2, regulatory subunit A, alpha (PPP2R1A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|294774553|ref|NR_033500.1| Homo sapiens protein phosphatase 2, regulatory subunit A, alpha (PPP2R1A), transcript variant 2, non-coding RNA"	Chr19	 52693055	 52695472	+	5518	NR_033500.1	NA	NA	NA	NA	NA	inter
CUST_35594_PI429285431	6.6509104	P	6.57158	P	1.05652755918172	0	lncRNA	37009-1_{1..1922}	n342731|CR613004|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5234|NULL|1.0835300|-0.2685498	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342731|CR613004|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5234|NULL|1.0835300|-0.2685498	chr6	 26538594	 26540515	+	NA	NA	NA	NA	HMGN4	NA	chr6:26538572-26547165	inner
LNCA_21_P0006212	2.574477	A	2.2996936	A	1.20981243957114	0	lncRNA	TCONS_00016132	NA	NA	NA	NA	XLOC_007524	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007524), lincRNA [TCONS_00016132]"	chr9:116072102-116072669	hs|9q32	Agilent_HUMAN_G3V2	TCONS_00016132	TCONS_00016132	chr9	116072102	116072669	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24212_PI429285431	1.6853836	A	1.1841536	A	1.41541979401557	0	lncRNA	25763-1_{1..468}	lnc-AC016251.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC016251.1-1:5	chr15	 96870428	 96870895	-	lnc-AC016251.1-1	lnc-AC016251.1-1:5	ENSG00000247809.3	RP11-327J17.3	NR2F2	NA	chr15:96869157-96880556	inner
LNCA_21_P0010839	5.27712	P	5.835603	P	0.679015776464987	0	lncRNA	TCONS_l2_00003169	NA	NA	NA	NA	XLOC_l2_001683	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001683), lincRNA [TCONS_l2_00003169]"	chr10:92821868-92821927	hs|10q23.31	Agilent_HUMAN_G3V2	TCONS_l2_00003169	TCONS_l2_00003169	chr10	 92821868	 92821927	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47417_PI429285431	0.87977225	A	0.93810725	A	0.960371835585313	0	lncRNA	51458-1_{1..3000}	"gi|237681082|ref|NR_027672.1| Homo sapiens adenosine deaminase, RNA-specific, B1 (ADARB1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237681082|ref|NR_027672.1| Homo sapiens adenosine deaminase, RNA-specific, B1 (ADARB1), transcript variant 5, non-coding RNA"	Chr21	 46494493	 46497492	+	104	NR_027672.1	NA	NA	NA	NA	NA	inter
LNCA_33_P3321369	8.500622	P	9.010415	P	0.702323201002754	0	lncRNA	XR_109231	XR_109231	XR_109231	   145757	Hs.730396	LOC145757	uncharacterized LOC145757	NA	THC2646184	NA	"PREDICTED: Homo sapiens hypothetical LOC145757 (LOC145757), miscRNA [XR_109231]"	chr15:101414136-101414195	hs|15q26.3	Agilent_HUMAN_G3V2	XR_109231	XR_109231	chr15	101414136	101414195	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46099_PI429285431	4.4197717	P	3.4530733	P	1.95436292430957	0	lncRNA	50363-2_{3001..5549}	"gi|226342870|ref|NR_027449.1| Homo sapiens TBC1 domain family, member 15 (TBC1D15), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226342870|ref|NR_027449.1| Homo sapiens TBC1 domain family, member 15 (TBC1D15), transcript variant 4, non-coding RNA"	Chr12	 72236487	 72239035	+	64786	NR_027449.1	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_42487_PI429285431	5.6969347	P	5.667861	P	1.02035678278946	0	lncRNA	45248-1_{1..130}	ENST00000517276 ncrna:snoRNA chromosome:GRCh37:1:14022565:14022694:-1 gene:ENSG00000253085 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517276 ncrna:snoRNA chromosome:GRCh37:1:14022565:14022694:-1 gene:ENSG00000253085 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 14022565	 14022694	-	ENSG00000253085	ENST00000517276	NA	NA	PRDM2	NA	chr1:14026735-14032694	inter
CUST_22426_PI429285431	9.453026	P	9.391496	P	1.04357189804563	0	lncRNA	24014-2_{3001..3679}	lnc-GLB1L2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLB1L2-1:4	chr11	134358856	134359534	+	lnc-GLB1L2-1	lnc-GLB1L2-1:4	ENSG00000255545.2	RP11-627G23.1	NA	NA	NA	inter
LNCA_21_P0003052	1.8531432	A	0.92860866	A	1.89807176387033	0	lncRNA	TCONS_00006291	NA	NA	NA	NA	XLOC_002897	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002897), lincRNA [TCONS_00006291]"	chr3:158587472-158587531	hs|3q25.32	Agilent_HUMAN_G3V2	TCONS_00006291	TCONS_00006291	chr3	158587472	158587531	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43647_PI429285431	7.006257	P	8.578031	P	0.33639449462556	0	lncRNA	48404-1_{1..1117}	"gi|291045311|ref|NR_033386.1| Homo sapiens kelch domain containing 9 (KLHDC9), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|291045311|ref|NR_033386.1| Homo sapiens kelch domain containing 9 (KLHDC9), transcript variant 4, non-coding RNA"	Chr1	161068151	161069267	+	126823	NR_033386.1	NA	NA	NA	NA	NA	inter
CUST_16963_PI429285431	1.1341741	A	1.7425213	A	0.655947747454225	0	lncRNA	18675-1_{1..1273}	lnc-FAM182B-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM182B-7:1	chr20	 26231899	 26233171	-	lnc-FAM182B-7	lnc-FAM182B-7:1	XLOC_013716	linc-ZNF337-3	NA	NA	NA	inter
CUST_1675_PI429285431	5.0461216	P	5.30725	P	0.834435013052601	0	lncRNA	1659-1_{1..579}	"transcript_id ""ENST00000466692.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000466692.1"" | genecode_v17"	chr4	  1575789	  1576367	-	ENSG00000244459.2	ENST00000466692.1	RP11-1398P2.1	RP11-1398P2.1-001	NA	NA	NA	inter
LNCA_21_P0001230	4.1787567	P	3.9820113	P	1.14610990782246	0	lncRNA	ENST00000436706	NA	BC008027	NA	Hs.638720	XLOC_001225	NA	ENST00000436706	THC2534097	NA	"BROAD Institute lincRNA (XLOC_001225), lincRNA [TCONS_00000743]"	chr1:224400580-224400521	hs|1q42.11	Agilent_HUMAN_G3V2	ENST00000436706	ENST00000436706	chr1	224400521	224400580	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010400	0.9001542	A	0.92930365	A	0.979997891272712	0	lncRNA	TCONS_00029538	NA	NA	NA	NA	XLOC_014188	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014188), lincRNA [TCONS_00029538]"	chr22:25960161-25960220	hs|22q12.1	Agilent_HUMAN_G3V2	TCONS_00029538	TCONS_00029538	chr22	 25960161	 25960220	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30768_PI429285431	5.257305	P	5.040358	P	1.16227140860087	0	lncRNA	32553-1_{1..259}	n336606|Z36787|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327095|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327095|1.3411000|-0.2589683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336606|Z36787|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327095|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327095|1.3411000|-0.2589683	chr11	 47772447	 47772705	-	NA	NA	NA	NA	FNBP4	NA	chr11:47762447-47782813	inner
CUST_8585_PI429285431	3.0964582	P	3.4662292	P	0.77390532956033	0	lncRNA	10141-1_{1..1615}	lnc-ARL5B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARL5B-1:1	chr10	 18943545	 18945159	+	lnc-ARL5B-1	lnc-ARL5B-1:1	ENSG00000246675	XLOC_008405	NSUN6	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-32.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-19.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr10:18933545-18940550"	NA	inter
CUST_19350_PI429285431	0.9052499	A	0.9116219	A	0.995593005590263	0	lncRNA	21016-1_{1..516}	lnc-FANCF-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FANCF-4:1	chr11	 22283715	 22284230	-	lnc-FANCF-4	lnc-FANCF-4:1	ENSG00000255372.1	CTD-3064C13.1	ANO5	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ANO5:range=chr11:22215039-223013115'pad=0,hg19_refFlat_ANO5:range=chr11:22215039-223013115'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr11:22273715-22293802"	NA	inner
CUST_31429_PI429285431	6.3352084	P	7.006052	P	0.628139282341751	0	lncRNA	33200-1_{1..598}	n337896|BC009467|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|279|NULL|-0.6738060|-0.0767734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337896|BC009467|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|279|NULL|-0.6738060|-0.0767734	chrX	153652726	153653323	-	NA	NA	NA	NA	TAZ	NA	chrX:153642726-153650065	inter
CUST_38762_PI429285431	9.881156	P	10.085271	P	0.868071029229672	0	lncRNA	39754-1_{1..2751}	n384348|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fay.1||7.3836600|-0.3083062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384348|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fay.1||7.3836600|-0.3083062	chr3	156527059	156529809	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28474_PI429285431	0.91093713	A	1.0593388	A	0.902249491409354	0	lncRNA	30141-1_{1..470}	n325816|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000132852|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000132852|-1.0992900|-0.4914473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325816|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000132852|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000132852|-1.0992900|-0.4914473	chr12	 38836307	 38836776	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46181_PI429285431	1.0355879	A	0.9088742	A	1.09180385791247	0	lncRNA	50427-2_{3001..5246}	"gi|384871672|ref|NR_047594.1| Homo sapiens centromere protein J (CENPJ), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384871672|ref|NR_047594.1| Homo sapiens centromere protein J (CENPJ), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_047594.1	NA	NA	NA	NA	NA	Unknown
CUST_13500_PI429285431	0.8938332	A	0.9083404	A	0.989994763978772	0	lncRNA	15140-1_{1..437}	lnc-CYR61-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CYR61-2:1	chr1	 86093804	 86094240	+	lnc-CYR61-2	lnc-CYR61-2:1	XLOC_000278	linc-CLCA2-2	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20"	NA	inter
CUST_39315_PI429285431	6.6813793	P	5.3668113	P	2.48727840547001	0	lncRNA	40282-1_{1..1877}	n386350|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010iag.1||-1.1948800|-0.4209976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386350|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010iag.1||-1.1948800|-0.4209976	chr3	196195810	196197686	-	NA	NA	NA	NA	RNF168	NA	chr3:196195654-196207773	inner
CUST_88_PI429285431	0.8727499	A	0.8808415	A	0.99440702949753	0	lncRNA	81-1_{1..2693}	"transcript_id ""ENST00000442497.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000442497.2"" | genecode_v17"	chr19	 22934985	 22937677	-	ENSG00000180081.9	ENST00000442497.2	CTC-451A6.4	CTC-451A6.4-001	ZNF99	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF486:range=chr19:20278140-203089115'pad=0,hg19_refFlat_ZNF486:range=chr19:20278140-203089115'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF729:range=chr19:22469328-224999785'pad=0,hg19_refFlat_ZNF729:range=chr19:22469328-224999785'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF681:range=chr19:23926414-239415515'pad=0,hg19_refFlat_ZNF681:range=chr19:23926414-239415515'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF138:range=chr7:64292062-642925805'pad=0,hg19_refFlat_ZNF138:range=chr7:64292062-642925805'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_ZNF138:range=chr7:64254947-642925805'pad=0,hg19_refFlat_ZNF138:range=chr7:64254947-642925805'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF138:range=chr7:64275311-642925805'pad=0,hg19_refFlat_ZNF138:range=chr7:64275311-642925805'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_ZNF273:range=chr7:64363696-643894165'pad=0,hg19_refFlat_ZNF273:range=chr7:64363696-643894165'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr19:22924985-22947677"	NA	inner
CUST_41845_PI429285431	6.51183	P	6.61014	P	0.934126604277773	0	lncRNA	43480-1_{1..70}	ENST00000362103 ncrna:miRNA chromosome:GRCh37:2:219866362:219866431:-1 gene:ENSG00000198973 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362103 ncrna:miRNA chromosome:GRCh37:2:219866362:219866431:-1 gene:ENSG00000198973 gene_biotype:miRNA transcript_biotype:miRNA	chr2	219866362	219866431	-	ENSG00000198973	ENST00000362103	NA	NA	CRYBA2	NA	chr2:219856362-219858127	inter
CUST_12169_PI429285431	0.9030099	A	0.9137682	A	0.992570649764297	0	lncRNA	13768-1_{1..259}	lnc-ZNF333-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF333-3:1	chr19	 14902484	 14902742	+	lnc-ZNF333-3	lnc-ZNF333-3:1	XLOC_012978	linc-OR7C2-3	OR7C1	NA	chr19:14909986-14910948	inter
CUST_7879_PI429285431	3.017545	A	3.9228158	P	0.533932473219441	0	lncRNA	9499-1_{1..618}	lnc-UBE2N-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-UBE2N-2:4	chr12	 93965041	 93965658	-	lnc-UBE2N-2	lnc-UBE2N-2:4	ENSG00000246985	RP11-887P2.1	SOCS2	NA	chr12:93963598-93969978	inter
CUST_36605_PI429285431	1.5816205	A	1.6808406	A	0.933537511986032	0	lncRNA	37798-2_{3001..4258}	n345101|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_650|NULL|-1.2769600|-0.2497625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n345101|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_650|NULL|-1.2769600|-0.2497625	chr10	 47099360	 47100617	-	NA	NA	NA	NA	PPYR1	NA	chr10:47086360-47088320	inter
CUST_17332_PI429285431	3.012035	A	3.4826639	P	0.72164994735097	0	lncRNA	19050-1_{1..751}	lnc-E2F7-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-E2F7-2:2	chr12	 77710710	 77711460	-	lnc-E2F7-2	lnc-E2F7-2:2	XLOC_010135	linc-E2F7-3	NA	NA	NA	inter
CUST_3678_PI429285431	3.1781595	A	3.162615	P	1.01083288167314	0	lncRNA	3646-1_{1..535}	"transcript_id ""ENST00000422807.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422807.1"" | genecode_v17"	chr10	 45659676	 45660210	-	ENSG00000227683.1	ENST00000422807.1	RP11-445N18.5	RP11-445N18.5-001	NA	NA	NA	inter
CUST_40029_PI429285431	0.89626896	A	0.88562393	A	1.00740586127381	0	lncRNA	40887-1_{1..962}	n407206|NR_026672|lncRNA|Homosapiens||RefGeneNoncode|NR_026672||1.5625200|-0.2744780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407206|NR_026672|lncRNA|Homosapiens||RefGeneNoncode|NR_026672||1.5625200|-0.2744780	chr12	  9907163	  9908124	-	NA	NA	NA	NA	CD69	NA	chr12:9905082-9913497	inner
LNCA_21_P0003133	0.87610644	A	0.8787849	A	0.998145155357211	0	lncRNA	TCONS_00006547	NA	NA	NA	NA	XLOC_003167	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003167), lincRNA [TCONS_00006547]"	chr3:80810450-80810391	hs|3p12.2	Agilent_HUMAN_G3V2	TCONS_00006547	TCONS_00006547	chr3	 80810391	 80810450	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14877_PI429285431	4.3313823	P	4.026475	P	1.23533925816938	0	lncRNA	16543-1_{1..1778}	lnc-AC092117.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092117.1-1:3	chr16	  2799546	  2801323	-	lnc-AC092117.1-1	lnc-AC092117.1-1:3	XLOC_011855	linc-PRSS27	SRRM2	NA	chr16:2802330-2810811	inter
CUST_27288_PI429285431	1.8880248	A	2.173079	A	0.820710775295207	0	lncRNA	28845-1_{1..805}	n324438|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041678|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041678|0.1495060|-0.2701393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324438|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041678|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041678|0.1495060|-0.2701393	chr6	107272559	107273363	-	NA	NA	NA	NA	C6orf203	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-61.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-61.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-18.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-61.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80chr6:107349407-107351999"	NA	inter
CUST_16499_PI429285431	1.4313811	A	0.87709016	A	1.46844673937309	0	lncRNA	18196-1_{1..534}	lnc-TTLL7-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTLL7-5:1	chr1	 83020832	 83021365	-	lnc-TTLL7-5	lnc-TTLL7-5:1	XLOC_000885	linc-ELTD1-11	NA	NA	NA	inter
CUST_43847_PI429285431	10.079825	P	11.045187	P	0.51214988711185	0	lncRNA	48570-2_{3001..4313}	"gi|299829290|ref|NR_033873.1| Homo sapiens uncharacterized LOC400955 (FLJ30838), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|299829290|ref|NR_033873.1| Homo sapiens uncharacterized LOC400955 (FLJ30838), non-coding RNA"	Chr2	 58750888	 58752200	+	400955	NR_033873.1	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.11;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40"	NA	inter
LNCA_21_P0002588	3.7105055	P	4.403591	P	0.618529581668309	0	lncRNA	TCONS_00004750	NA	NA	NA	NA	XLOC_001432	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001432), lincRNA [TCONS_00004750]"	chr2:38095379-38098973	hs|2p22.2	Agilent_HUMAN_G3V2	TCONS_00004750	TCONS_00004750	chr2	 38095379	 38098973	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31132_PI429285431	10.590995	P	10.904744	P	0.804548334038926	0	lncRNA	32927-1_{1..259}	n337457|DQ995344|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394701|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394701|0.3390750|-0.0483424	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337457|DQ995344|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394701|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394701|0.3390750|-0.0483424	chr7	149571076	149571334	+	NA	NA	NA	NA	ZNF862	NA	chr7:149561076-149564568	inner
CUST_25275_PI429285431	2.9407365	A	2.4234838	A	1.43122718937957	0	lncRNA	26805-1_{1..312}	lnc-CARNS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CARNS1-1:1	chr11	 67181009	 67181320	+	lnc-CARNS1-1	lnc-CARNS1-1:1	ENSG00000255698.1	AP003419.15	TBC1D10C	NA	chr11:67171412-67177560	inter
CUST_35560_PI429285431	0.8827887	A	0.8785528	A	1.00294041671167	0	lncRNA	36974-1_{1..722}	n342690|X99658|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5192|NULL|0.7137720|-0.2463200	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342690|X99658|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5192|NULL|0.7137720|-0.2463200	chr17	 30366992	 30367713	+	NA	NA	NA	NA	LRRC37B	NA	chr17:30356992-30377713	inner
CUST_24852_PI429285431	2.7359972	P	3.183389	A	0.733367480715685	0	lncRNA	26392-1_{1..656}	lnc-NOS2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NOS2-2:1	chr17	 25952915	 25953570	-	lnc-NOS2-2	lnc-NOS2-2:1	ENSG00000266872.1	RP11-19P22.8	KSR1	NA	chr17:25942915-25950718	inter
CUST_50156_PI429285431	0.8943352	A	0.89500594	A	0.999535186519383	0	lncRNA	53881-1_{1..687}	hg19_lincRNAsTranscripts_TCONS_l2_00028602 range=chr9:3546511-3602807 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028602 range=chr9:3546511-3602807 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	  3546511	  3547197	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32690_PI429285431	1.5556393	A	1.5483317	A	1.00507809236363	0	lncRNA	34336-1_{1..2123}	n339317|BC043214|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1749|NULL|-1.1610500|-0.2453043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n339317|BC043214|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1749|NULL|-1.1610500|-0.2453043	chr16	 86320032	 86322154	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36082_PI429285431	0.8845738	A	0.88798857	A	0.997635860791675	0	lncRNA	37386-2_{3001..4891}	n344670|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_219|NULL|-1.4261000|-0.3171921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344670|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_219|NULL|-1.4261000|-0.3171921	chr7	 19941141	 19943031	-	NA	NA	NA	NA	MACC1	NA	chr7:20174278-20175108	inter
CUST_50424_PI429285431	5.217205	P	5.2454157	P	0.980635775488561	0	lncRNA	54128-1_{1..1170}	hg19_lincRNAsTranscripts_TCONS_l2_00030466 range=chrX:27190540-27204773 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030466 range=chrX:27190540-27204773 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 27190540	 27191709	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24825_PI429285431	0.8989931	A	0.90370953	A	0.996736157794148	0	lncRNA	26365-1_{1..705}	lnc-KAT2B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KAT2B-4:1	chr3	 21621120	 21621824	+	lnc-KAT2B-4	lnc-KAT2B-4:1	ENSG00000225542.1	ZNF385D-AS1	ZNF385D	NA	chr3:21611120-21631451	inner
CUST_46339_PI429285431	5.4160566	P	4.868776	P	1.46132857507542	0	lncRNA	50565-1_{1..3000}	"gi|332078498|ref|NR_038167.1| Homo sapiens fucosyltransferase 8 (alpha (1,6) fucosyltransferase) (FUT8), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|332078498|ref|NR_038167.1| Homo sapiens fucosyltransferase 8 (alpha (1,6) fucosyltransferase) (FUT8), transcript variant 5, non-coding RNA"	Chr14	 65877310	 65880309	+	2530	NR_038167.1	NA	NA	NA	NA	NA	inter
CUST_41065_PI429285431	0.89583224	A	0.90681	A	0.992419673305962	0	lncRNA	41729-1_{1..74}	ENST00000579779 ncrna:miRNA chromosome:GRCh37:4:99918538:99918611:1 gene:ENSG00000265213 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579779 ncrna:miRNA chromosome:GRCh37:4:99918538:99918611:1 gene:ENSG00000265213 gene_biotype:miRNA transcript_biotype:miRNA	chr4	 99918538	 99918611	+	ENSG00000265213	ENST00000579779	NA	NA	METAP1	NA	chr4:99908538-99928611	inner
LNCA_21_P0001863	0.8795493	A	0.8822975	A	0.998096906102382	0	lncRNA	AK125615	NA	AK125615	NA	NA	XLOC_001489	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001489), lincRNA [TCONS_00002901]"	chr2:61163380-61163439	hs|2p16.1	Agilent_HUMAN_G3V2	AK125615	AK125615	chr2	 61163380	 61163439	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9746_PI429285431	0.886512	A	0.8881916	A	0.998836467425083	0	lncRNA	11263-1_{1..1096}	lnc-HNRNPA2B1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HNRNPA2B1-3:1	chr7	 26101163	 26102258	-	lnc-HNRNPA2B1-3	lnc-HNRNPA2B1-3:1	XLOC_006384	linc-NPVF-2	NA	NA	NA	inter
CUST_30418_PI429285431	7.100835	P	5.0458746	P	4.15532235372631	0	lncRNA	32198-1_{1..1063}	n335552|BX248761|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267071|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267071|1.8667300|-0.1687069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335552|BX248761|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267071|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267071|1.8667300|-0.1687069	chr14	102552204	102553266	-	NA	NA	NA	NA	WDR20	NA	chr14:102606189-102616022	inner
CUST_36747_PI429285431	1.3670087	A	1.9731221	A	0.656964172262387	0	lncRNA	37920-1_{1..2128}	n345227|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_776|NULL|-1.2969500|-0.4081075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345227|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_776|NULL|-1.2969500|-0.4081075	chr13	 50931232	 50933359	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35795_PI429285431	6.3105683	P	6.566808	P	0.837267366172861	0	lncRNA	37205-1_{1..724}	n344475|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_23|NULL|-1.3070600|-0.2047243	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344475|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_23|NULL|-1.3070600|-0.2047243	chrX	 47372683	 47373406	+	NA	NA	NA	NA	NA	"hg19_refFlat_NUS1:range=chr6:117996834-1180281785'pad=0,hg19_refFlat_NUS1:range=chr6:117996834-1180281785'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.80"	NA	inter
CUST_20221_PI429285431	2.7149396	A	2.2025752	A	1.42638595247187	0	lncRNA	21865-1_{1..503}	lnc-ZNF705A-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF705A-1:9	chr12	  8347529	  8348031	+	lnc-ZNF705A-1	lnc-ZNF705A-1:9	ENSG00000226711.2	FAM66C	NA	NA	NA	inter
CUST_21608_PI429285431	1.4186437	A	1.9816445	A	0.676892764177077	0	lncRNA	23221-1_{1..570}	lnc-FN1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FN1-3:4	chr2	216692075	216692644	-	lnc-FN1-3	lnc-FN1-3:4	ENSG00000235770.1	LINC00607	NA	NA	NA	inter
CUST_31897_PI429285431	5.691151	P	5.70501	P	0.990439666588095	0	lncRNA	33628-1_{1..2212}	n338451|AK057526|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|848|NULL|-1.1624000|-0.1995814	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338451|AK057526|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|848|NULL|-1.1624000|-0.1995814	chr14	 91026141	 91028352	-	NA	NA	NA	NA	TTC7B	NA	chr14:91016141-91038352	inner
CUST_29984_PI429285431	0.90850204	A	1.002833	A	0.936706538004792	0	lncRNA	31750-1_{1..349}	n334260|S67637|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216207_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216207_03|2.3141400|-0.1724019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334260|S67637|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216207_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216207_03|2.3141400|-0.1724019	chr2	 89901315	 89901663	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2751_PI429285431	1.0889482	A	0.9291397	A	1.11713884180641	0	lncRNA	2735-1_{1..437}	"transcript_id ""ENST00000437145.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437145.1"" | genecode_v17"	chr7	  3122886	  3123322	-	ENSG00000228334.1	ENST00000437145.1	AC024028.1	AC024028.1-001	NA	NA	NA	inter
CUST_38974_PI429285431	10.5705185	P	10.135527	P	1.35190286792954	0	lncRNA	39958-1_{1..1527}	n385199|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tui.2||4.6792300|-0.3722268	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385199|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tui.2||4.6792300|-0.3722268	chr7	 65216091	 65217617	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16224_PI429285431	5.3257275	P	5.424647	P	0.933732044167345	0	lncRNA	17931-1_{1..1016}	lnc-ZNF572-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF572-1:5	chr8	125963058	125964073	+	lnc-ZNF572-1	lnc-ZNF572-1:5	XLOC_006916	linc-ZNF572	NA	NA	NA	inter
CUST_38330_PI429285431	2.2474897	A	1.6892916	A	1.47242903113494	0	lncRNA	39376-1_{1..534}	n382046|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vel.1||-1.0188200|-0.2495827	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382046|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vel.1||-1.0188200|-0.2495827	chr13	 50760015	 50760548	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44803_PI429285431	1.2883663	A	1.946847	A	0.63354513123706	0	lncRNA	49338-1_{1..3000}	"gi|373838769|ref|NR_046100.1| Homo sapiens uncharacterized LOC285762 (LOC285762), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|373838769|ref|NR_046100.1| Homo sapiens uncharacterized LOC285762 (LOC285762), non-coding RNA"	Chr6	119773712	119776711	-	285762	NR_046100.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014501	3.9729352	P	4.901157	P	0.525505657069928	0	lncRNA	XR_110115	XR_110115	XR_110115	NA	NA	LOC100507114	uncharacterized LOC100507114	ENST00000422430	THC2697021	NA	"PREDICTED: Homo sapiens hypothetical LOC100507114 (LOC100507114), miscRNA [XR_110115]"	chr13:36273079-36273138	hs|13q13.3	Agilent_HUMAN_G3V2	XR_110115	XR_110115	chr13	 36273079	 36273138	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014079	7.3501854	P	6.4141216	P	1.91330092581818	0	lncRNA	ENST00000476966	XR_108361	XR_108361	NA	NA	C1orf61	chromosome 1 open reading frame 61	ENST00000476966	THC2512231	GO:0005634	"PREDICTED: Homo sapiens hypothetical LOC100505765 (LOC100505765), miscRNA [XR_108361]"	chr1:156381856-156381797	hs|1q22	Agilent_HUMAN_G3V2	ENST00000476966	ENST00000476966	chr1	156381797	156381856	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8049_PI429285431	1.1055579	A	1.5838418	A	0.717830983412042	0	lncRNA	9657-1_{1..583}	lnc-TMEM60-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM60-1:2	chr7	 77325489	 77326071	-	lnc-TMEM60-1	lnc-TMEM60-1:2	ENSG00000214293	AC090421.1	RSBN1L	NA	chr7:77325743-77335582	inter
CUST_9696_PI429285431	1.2956977	A	1.07986	A	1.16137807211294	0	lncRNA	11211-1_{1..2386}	lnc-PNPT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PNPT1-1:1	chr2	 55858185	 55860570	-	lnc-PNPT1-1	lnc-PNPT1-1:1	XLOC_002099	linc-SMEK2	PNPT1	NA	chr2:55861198-55868573	inter
CUST_19190_PI429285431	4.3851614	P	4.3100023	P	1.0534772067167	0	lncRNA	20860-1_{1..143}	lnc-TRA2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRA2A-1:1	chr7	 23720338	 23720480	-	lnc-TRA2A-1	lnc-TRA2A-1:1	ENSG00000234286.1	AC006026.13	C7orf46	"hg19_refFlat_FAM221A:range=chr7:23719838-237417835'pad=0,hg19_refFlat_FAM221A:range=chr7:23719838-237417835'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.50chr7:23710338-23730405"	NA	inner
CUST_42284_PI429285431	5.0179467	P	5.1737566	P	0.897628320916439	0	lncRNA	44898-1_{1..132}	ENST00000384289 ncrna:snoRNA chromosome:GRCh37:2:69747175:69747306:-1 gene:ENSG00000207016 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384289 ncrna:snoRNA chromosome:GRCh37:2:69747175:69747306:-1 gene:ENSG00000207016 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 69747175	 69747306	-	ENSG00000207016	ENST00000384289	NA	NA	AAK1	NA	chr2:69737175-69757306	inner
CUST_3080_PI429285431	1.3973379	A	0.9527914	A	1.36088626521145	0	lncRNA	3059-1_{1..537}	"transcript_id ""ENST00000519764.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519764.1"" | genecode_v17"	chr8	 38409766	 38410302	-	ENSG00000254100.1	ENST00000519764.1	RP11-675F6.4	RP11-675F6.4-001	NA	NA	NA	inter
CUST_11799_PI429285431	2.2390947	A	2.280176	A	0.971926215610501	0	lncRNA	13379-2_{3001..3663}	lnc-C5orf38-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf38-1:5	chr5	  2938206	  2938868	+	lnc-C5orf38-1	lnc-C5orf38-1:5	XLOC_004256	linc-IRX1-8	NA	NA	NA	inter
CUST_11881_PI429285431	1.3414204	A	0.95708966	A	1.30525414486058	0	lncRNA	13462-1_{1..1904}	lnc-CTA-299D3.8.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTA-299D3.8.1-1:1	chr22	 48884876	 48886779	-	lnc-CTA-299D3.8.1-1	lnc-CTA-299D3.8.1-1:1	XLOC_014409	linc-CERK-4	FAM19A5	NA	chr22:48885288-48895122	inter
CUST_3603_PI429285431	2.36527	A	1.7572982	A	1.52411503855222	0	lncRNA	3573-1_{1..613}	"transcript_id ""ENST00000425246.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425246.1"" | genecode_v17"	chr10	  5650438	  5651050	-	ENSG00000231483.1	ENST00000425246.1	RP11-336A10.5	RP11-336A10.5-001	NA	NA	NA	inter
CUST_20894_PI429285431	1.3740258	A	1.519613	A	0.904011355562767	0	lncRNA	22525-1_{1..559}	lnc-CA5A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CA5A-1:1	chr16	 88120617	 88121175	-	lnc-CA5A-1	lnc-CA5A-1:1	ENSG00000261193.1	RP11-863P13.5	BANP	NA	chr16:88110617-88110924	inter
CUST_47126_PI429285431	3.6040673	P	3.6322598	P	0.98064814656019	0	lncRNA	51207-1_{1..1534}	"gi|397139717|ref|XR_158935.1| PREDICTED: Homo sapiens uncharacterized LOC100507646 (LOC100507646), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|397139717|ref|XR_158935.1| PREDICTED: Homo sapiens uncharacterized LOC100507646 (LOC100507646), misc_RNA"	NA	NA	NA	NA	NA	XR_158935.1	NA	NA	NA	NA	NA	Unknown
CUST_10587_PI429285431	2.0710268	A	2.9814415	P	0.532032137598489	0	lncRNA	12117-1_{1..347}	lnc-ZBTB32-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZBTB32-1:1	chr19	 36198868	 36199214	+	lnc-ZBTB32-1	lnc-ZBTB32-1:1	XLOC_013052	linc-ZBTB32	MLL4	NA	chr19:36208921-36209158	inter
CUST_14086_PI429285431	2.4796224	A	2.165171	A	1.24353869468082	0	lncRNA	15731-1_{1..441}	lnc-FRG2C-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRG2C-3:1	chr3	 75488905	 75489345	+	lnc-FRG2C-3	lnc-FRG2C-3:1	XLOC_002710	linc-FRG2C-3	NA	NA	NA	inter
CUST_5472_PI429285431	1.4573668	A	1.3459353	A	1.08029962158152	0	lncRNA	5405-1_{1..895}	"transcript_id ""ENST00000452511.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452511.1"" | genecode_v17"	chr16	 26329467	 26330361	+	ENSG00000231876.2	ENST00000452511.1	AC009158.1	AC009158.1-002	NA	NA	NA	inter
CUST_15316_PI429285431	1.302674	A	2.2774823	A	0.508807450018516	0	lncRNA	16995-1_{1..262}	lnc-ANKRA2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRA2-3:1	chr5	 72570511	 72570772	-	lnc-ANKRA2-3	lnc-ANKRA2-3:1	XLOC_004881	linc-ZNF366-1	NA	NA	NA	inter
CUST_27817_PI429285431	0.8951974	A	1.0341465	A	0.908180458844958	0	lncRNA	29403-1_{1..480}	n325045|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078256|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078256|-1.1858200|-0.2624385	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325045|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078256|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078256|-1.1858200|-0.2624385	chr20	 21022189	 21022668	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22643_PI429285431	0.90292275	A	0.9121616	A	0.993616578328278	0	lncRNA	24229-1_{1..1052}	lnc-CORO6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-CORO6-1:1	chr17	 27971814	 27972865	-	lnc-CORO6-1	lnc-CORO6-1:1	ENSG00000265625.1	RP11-68I3.11	SSH2	NA	chr17:27961814-27982865	inner
CUST_19278_PI429285431	0.889996	A	0.88615173	A	1.00266819823348	0	lncRNA	20946-1_{1..3000}	lnc-C8orf83-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C8orf83-2:2	chr8	 93889811	 93892810	-	lnc-C8orf83-2	lnc-C8orf83-2:2	ENSG00000248858.2	RP11-100L22.2	C8orf83	NA	chr8:93895758-93899865	inter
CUST_8339_PI429285431	5.1525187	P	5.170443	P	0.987652683448317	0	lncRNA	9921-1_{1..3000}	lnc-HAS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HAS1-1:1	chr19	 52195887	 52198886	-	lnc-HAS1-1	lnc-HAS1-1:1	ENSG00000251384	AC018755.2	NA	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40"	NA	inter
CUST_1889_PI429285431	1.2651513	A	0.8839187	A	1.30245416216134	0	lncRNA	1880-1_{1..587}	"transcript_id ""ENST00000509628.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509628.1"" | genecode_v17"	chr4	133757927	133758513	-	ENSG00000251488.1	ENST00000509628.1	RP11-404I7.2	RP11-404I7.2-001	NA	NA	NA	inter
CUST_40063_PI429285431	3.785177	P	3.7650912	P	1.01401978380988	0	lncRNA	40913-1_{1..2430}	n407279|NR_026751_3|lncRNA|Homosapiens||RefGeneNoncode|NR_026751_3||-0.9137540|-0.2599620	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407279|NR_026751_3|lncRNA|Homosapiens||RefGeneNoncode|NR_026751_3||-0.9137540|-0.2599620	chr6	  1262133	  1264562	-	NA	NA	NA	NA	FOXQ1	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr6:1312675-1314993"	NA	inner
CUST_41307_PI429285431	0.9001114	A	0.90143853	A	0.999080526557266	0	lncRNA	42315-1_{1..78}	ENST00000401182 ncrna:miRNA chromosome:GRCh37:X:133674215:133674292:-1 gene:ENSG00000216001 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401182 ncrna:miRNA chromosome:GRCh37:X:133674215:133674292:-1 gene:ENSG00000216001 gene_biotype:miRNA transcript_biotype:miRNA	chrX	133674215	133674292	-	ENSG00000216001	ENST00000401182	NA	NA	NA	NA	NA	inter
CUST_46978_PI429285431	6.6559377	P	7.0990753	P	0.73553321659239	0	lncRNA	51080-2_{3001..3909}	"gi|189217871|ref|NR_023359.1| Homo sapiens Cdk5 and Abl enzyme substrate 1 (CABLES1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|189217871|ref|NR_023359.1| Homo sapiens Cdk5 and Abl enzyme substrate 1 (CABLES1), non-coding RNA"	Chr18	 20717528	 20718436	+	91768	NR_023359.1	NA	NA	NA	NA	NA	inter
CUST_122_PI429285431	2.710469	A	2.3375778	A	1.29494533762912	0	lncRNA	114-1_{1..714}	"transcript_id ""ENST00000589531.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589531.1"" | genecode_v17"	chr1	   719750	   720463	+	ENSG00000237491.3	ENST00000589531.1	RP11-206L10.9	RP11-206L10.9-018	NA	NA	NA	inter
CUST_33537_PI429285431	2.1390812	A	2.7936897	A	0.63524785326283	0	lncRNA	35105-1_{1..2401}	n340279|AF130075|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2740|NULL|-0.4737100|-0.3209843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340279|AF130075|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2740|NULL|-0.4737100|-0.3209843	chr4	174388983	174391383	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6206_PI429285431	0.8878189	A	0.9009202	A	0.990959979764124	0	lncRNA	6132-1_{1..546}	"transcript_id ""ENST00000590484.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590484.1"" | genecode_v17"	chr18	 53763221	 53763766	-	ENSG00000267712.1	ENST00000590484.1	RP11-456O19.4	RP11-456O19.4-003	NA	NA	NA	inter
CUST_18967_PI429285431	7.68094	P	7.8521304	P	0.888109579647777	0	lncRNA	20659-1_{1..2242}	lnc-S100P-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-S100P-2:2	chr4	  6676720	  6678961	+	lnc-S100P-2	lnc-S100P-2:2	ENSG00000170846	AC093323.3	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00"	NA	inter
LNCA_21_P0003686	0.8769711	A	0.8780164	A	0.999275715672773	0	lncRNA	TCONS_00008347	NA	NA	NA	NA	XLOC_003794	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003794), lincRNA [TCONS_00008347]"	chr4:178304509-178304568	hs|4q34.3	Agilent_HUMAN_G3V2	TCONS_00008347	TCONS_00008347	chr4	178304509	178304568	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007006	4.781	P	5.3009157	P	0.697412583411029	0	lncRNA	TCONS_00018558	NA	NA	NA	NA	XLOC_008875	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008875), lincRNA [TCONS_00018558]"	chr10:83633194-83633135	hs|10q23.1	Agilent_HUMAN_G3V2	TCONS_00018558	TCONS_00018558	chr10	 83633135	 83633194	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12959_PI429285431	3.0729477	A	3.6121018	P	0.688174290234206	0	lncRNA	14586-1_{1..326}	lnc-SAP30-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SAP30-4:1	chr4	174440046	174440371	+	lnc-SAP30-4	lnc-SAP30-4:1	XLOC_003784	linc-KIAA1712-3	HAND2	NA	chr4:174447652-174450284	inter
CUST_52_PI429201921	5.473937	P	5.6737003	P	0.87069340444916	0	lncRNA	53-1_{1..1575}	TC09002554.hg.1	TCONS_l2_00029970-XLOC_l2_015208 // Broad TUCP // linc-FAM75A7-24 chr9:-:67785049-67786625 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:-:67785049-67786625	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00029970-XLOC_l2_015208	linc-FAM75A7-24	chr9	 67785049	 67786625	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52157_PI429285431	3.0953505	A	2.9527924	A	1.103860680929	0	lncRNA	55681-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017931 range=chr22:23734180-23739028 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017931 range=chr22:23734180-23739028 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 23734180	 23737179	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC388849:range=chr22:20136137-201372615'pad=0,hg19_refFlat_LOC388849:range=chr22:20136137-201372615'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30"	NA	inter
CUST_12848_PI429285431	0.8863021	A	1.3044292	A	0.748395557586745	0	lncRNA	14474-1_{1..1044}	lnc-MKRN3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MKRN3-3:1	chr15	 24224218	 24225261	+	lnc-MKRN3-3	lnc-MKRN3-3:1	XLOC_011170	linc-C15orf2-12	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80"	NA	inter
CUST_40234_PI429285431	0.87994736	A	0.99892205	A	0.920841851903138	0	lncRNA	41053-2_{3001..4618}	n408094|NR_028026|lncRNA|Homosapiens||RefGeneNoncode|NR_028026||5.7316600|-0.3688183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408094|NR_028026|lncRNA|Homosapiens||RefGeneNoncode|NR_028026||5.7316600|-0.3688183	chr11	 85371607	 85373224	-	NA	NA	NA	NA	TMEM126A	NA	chr11:85358963-85367597	inter
CUST_14139_PI429285431	6.3350134	P	6.5953574	P	0.834888822606014	0	lncRNA	15790-1_{1..344}	lnc-ENPP1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENPP1-4:1	chr6	132455412	132455755	+	lnc-ENPP1-4	lnc-ENPP1-4:1	XLOC_005465	linc-TAAR9-1	NA	NA	NA	inter
CUST_621_PI429285431	1.745692	A	2.0280278	A	0.822258658479378	0	lncRNA	613-1_{1..567}	"transcript_id ""ENST00000440148.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440148.1"" | genecode_v17"	chr1	244270667	244271233	+	ENSG00000237759.1	ENST00000440148.1	RP11-278H7.3	RP11-278H7.3-001	NA	NA	NA	inter
LNCA_21_P0006339	6.965641	P	6.678602	P	1.22013349337795	0	lncRNA	TCONS_00016530	NA	NA	NA	NA	XLOC_007264	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007264), lincRNA [TCONS_00016530]"	chr9:1929503-1929562	hs|9p24.3	Agilent_HUMAN_G3V2	TCONS_00016530	TCONS_00016530	chr9	  1929503	  1929562	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28675_PI429285431	1.7996612	A	1.8320339	A	0.977810837120592	0	lncRNA	30371-1_{1..537}	n326058|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046749|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046749|-1.1339700|-0.3741308	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326058|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046749|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046749|-1.1339700|-0.3741308	chr10	 11042119	 11042655	+	NA	NA	NA	NA	CELF2	NA	chr10:11047259-11062785	inner
CUST_22993_PI429285431	0.901245	A	0.9046248	A	0.997660043136446	0	lncRNA	24567-1_{1..499}	lnc-TM6SF1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TM6SF1-3:1	chr15	 83759073	 83759571	+	lnc-TM6SF1-3	lnc-TM6SF1-3:1	ENSG00000260351.1	RP11-382A20.6	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30"	NA	inter
CUST_38561_PI429285431	0.8974123	A	0.88827485	A	1.00635369734689	0	lncRNA	39572-1_{1..1998}	n383460|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002nvo.1||-1.0461900|-0.1832062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383460|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002nvo.1||-1.0461900|-0.1832062	chr19	 35085571	 35087568	-	NA	NA	NA	NA	ZNF302	NA	chr19:35168567-35176604	inter
CUST_14689_PI429285431	0.9026711	A	0.8918414	A	1.0075348209932	0	lncRNA	16358-1_{1..2954}	lnc-CHRAC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHRAC1-1:1	chr8	141475884	141478837	+	lnc-CHRAC1-1	lnc-CHRAC1-1:1	XLOC_006941	linc-CHRAC1-1	TRAPPC9	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50chr8:141465884-141468678"	NA	inter
CUST_44876_PI429285431	0.9144089	A	0.92461836	A	0.992948322172023	0	lncRNA	49400-1_{1..2151}	"gi|310119909|ref|XR_108737.1| PREDICTED: Homo sapiens uncharacterized LOC100505863 (LOC100505863), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|310119909|ref|XR_108737.1| PREDICTED: Homo sapiens uncharacterized LOC100505863 (LOC100505863), misc_RNA"	NA	NA	NA	NA	NA	XR_108737.1	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10"	NA	Unknown
CUST_9072_PI429285431	12.493061	P	11.4573	P	2.05019480790949	0	lncRNA	10595-1_{1..796}	lnc-SERPINC1-1:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:16	chr1	173836293	173837088	-	lnc-SERPINC1-1	lnc-SERPINC1-1:16	ENSG00000234741	GAS5	DARS2	NA	chr1:173826293-173827682	inter
LNCA_21_P0005798	6.499233	P	7.159539	P	0.632744075811002	0	lncRNA	ENST00000521143	NA	NA	NA	NA	XLOC_007000	NA	ENST00000521143	NA	NA	"BROAD Institute lincRNA (XLOC_007000), lincRNA [TCONS_00014929]"	chr8:9208853-9208794	hs|8p23.1	Agilent_HUMAN_G3V2	ENST00000521143	ENST00000521143	chr8	  9208794	  9208853	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004063	0.879508	A	0.88221574	A	0.998124897858052	0	lncRNA	ENST00000503470	NA	NA	NA	NA	XLOC_004557	NA	ENST00000503470	NA	NA	"BROAD Institute lincRNA (XLOC_004557), lincRNA [TCONS_00009512]"	chr5:133737533-133737592	hs|5q31.1	Agilent_HUMAN_G3V2	ENST00000503470	ENST00000503470	chr5	133737533	133737592	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46856_PI429285431	2.4158485	A	3.258896	P	0.557464754818348	0	lncRNA	50987-1_{1..942}	"gi|223941771|ref|NR_026906.1| Homo sapiens CRHR1 intronic transcript 1 (non-protein coding) (CRHR1-IT1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223941771|ref|NR_026906.1| Homo sapiens CRHR1 intronic transcript 1 (non-protein coding) (CRHR1-IT1), transcript variant 2, non-coding RNA"	Chr17	 43716341	 43717282	+	147081	NR_026906.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90"	NA	inter
CUST_13480_PI429285431	5.227028	P	4.991538	P	1.17730653220601	0	lncRNA	15118-1_{1..461}	lnc-PIK3R1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIK3R1-1:2	chr5	 67494018	 67494478	+	lnc-PIK3R1-1	lnc-PIK3R1-1:2	XLOC_004412	linc-PIK3R1-1	NA	NA	NA	inter
CUST_46126_PI429285431	2.1598303	A	2.6125236	A	0.730677506208231	0	lncRNA	50384-1_{1..3000}	"gi|330340410|ref|NR_038118.1| Homo sapiens methylmalonic aciduria (cobalamin deficiency) cblB type (MMAB), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|330340410|ref|NR_038118.1| Homo sapiens methylmalonic aciduria (cobalamin deficiency) cblB type (MMAB), transcript variant 2, non-coding RNA"	Chr12	109991520	109994519	-	326625	NR_038118.1	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80"	NA	inter
CUST_15986_PI429285431	0.87903416	A	0.8777082	A	1.00091950792398	0	lncRNA	17685-1_{1..429}	lnc-VPS54-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VPS54-1:2	chr2	 64028406	 64028834	-	lnc-VPS54-1	lnc-VPS54-1:2	XLOC_002120	linc-C2orf86-3	NA	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80"	NA	inter
CUST_34164_PI429285431	4.7920523	P	5.033974	P	0.845618180726377	0	lncRNA	35681-1_{1..1340}	n341008|BC063641|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3474|NULL|-0.5196540|-0.3511793	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341008|BC063641|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3474|NULL|-0.5196540|-0.3511793	chr11	 32875248	 32876587	+	NA	NA	NA	NA	PRRG4	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30chr11:32865248-32879669"	NA	inner
CUST_36537_PI429285431	4.895558	P	3.1399674	P	3.37664520806904	0	lncRNA	37735-1_{1..683}	n345037|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_586|NULL|-1.4710800|-0.1819149	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345037|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_586|NULL|-1.4710800|-0.1819149	chr9	  2525575	  2526257	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009708	2.7068348	A	3.4082584	P	0.614965081572644	0	lncRNA	TCONS_00026990	NA	NA	NA	NA	XLOC_013039	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013039), lincRNA [TCONS_00026990]"	chr19:32564831-32564890	hs|19q13.11	Agilent_HUMAN_G3V2	TCONS_00026990	TCONS_00026990	chr19	 32564831	 32564890	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32955_PI429285431	3.0062988	A	3.308793	P	0.810849348847994	0	lncRNA	34574-2_{3001..4472}	n339632|AK128163|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2076|NULL|-1.0383400|-0.3633076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339632|AK128163|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2076|NULL|-1.0383400|-0.3633076	chr3	143375168	143376639	+	NA	NA	NA	NA	SLC9A9	NA	chr3:143362168-143386642	inner
CUST_30115_PI429285431	6.1130586	P	5.83506	P	1.21251164243253	0	lncRNA	31888-1_{1..409}	n334674|AJ001432|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243873|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243873|-1.1487700|-0.0846491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334674|AJ001432|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243873|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243873|-1.1487700|-0.0846491	chr1	 25256360	 25256768	-	NA	NA	NA	NA	RUNX3	NA	chr1:25246360-25266769	inner
LNCA_21_P0003630	3.4787772	P	1.9371579	A	2.91121078303485	0	lncRNA	THC2706940	NA	NA	NA	NA	XLOC_003613	NA	NA	THC2706940	NA	"BROAD Institute lincRNA (XLOC_003613), lincRNA [TCONS_00008169]"	chr4:099065052-099065111	hs|4q23	Agilent_HUMAN_G3V2	THC2706940	THC2706940	chr4	 99065052	 99065111	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11834_PI429285431	0.92120373	A	0.91518223	A	1.00418250812236	0	lncRNA	13415-1_{1..292}	lnc-RFPL4B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RFPL4B-2:1	chr6	113058853	113059144	+	lnc-RFPL4B-2	lnc-RFPL4B-2:1	XLOC_005433	linc-MARCKS-5	NA	NA	NA	inter
CUST_4574_PI429285431	4.1081424	P	3.685428	P	1.34044720658415	0	lncRNA	4523-1_{1..1589}	"transcript_id ""ENST00000447147.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000447147.1"" | genecode_v17"	chr13	 30914407	 30915995	-	ENSG00000238121.1	ENST00000447147.1	LINC00426	LINC00426-007	NA	NA	NA	inter
CUST_4286_PI429285431	1.3624661	A	0.9159457	A	1.36274950853826	0	lncRNA	4241-1_{1..557}	"transcript_id ""ENST00000540024.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000540024.1"" | genecode_v17"	chr12	 65277554	 65278110	+	ENSG00000255693.1	ENST00000540024.1	RP11-766N7.3	RP11-766N7.3-002	TBC1D30	NA	chr12:65267554-65274802	inter
CUST_21219_PI429285431	6.0191083	P	5.9608645	P	1.04119753404236	0	lncRNA	22844-1_{1..401}	lnc-BAZ2B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BAZ2B-1:1	chr2	160568825	160569225	-	lnc-BAZ2B-1	lnc-BAZ2B-1:1	ENSG00000226266.1	AC009961.3	7-Mar	NA	chr2:160569010-160578941	inter
CUST_51289_PI429285431	7.2539163	P	7.2469773	P	1.00482133369204	0	lncRNA	54895-1_{1..1455}	hg19_lincRNAsTranscripts_TCONS_l2_00008982 range=chr15:32791456-32806910 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008982 range=chr15:32791456-32806910 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 32791456	 32792910	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40"	NA	inter
CUST_20893_PI429285431	0.8952987	A	0.91103685	A	0.98915043147554	0	lncRNA	22524-1_{1..551}	lnc-THRSP-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THRSP-3:1	chr11	 77562404	 77562954	+	lnc-THRSP-3	lnc-THRSP-3:1	ENSG00000254691.1	RP11-91P24.5	C11orf67	NA	chr11:77552404-77572557	inner
CUST_34173_PI429285431	1.4955288	A	0.9023875	A	1.50852781722529	0	lncRNA	35690-1_{1..1761}	n341022|BC033368|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3488|NULL|0.0231426|-0.1689315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341022|BC033368|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3488|NULL|0.0231426|-0.1689315	chr11	 44939290	 44941050	-	NA	NA	NA	NA	TSPAN18	"hg19_refFlat_TSPAN18:range=chr11:44927968-449507295'pad=0,hg19_refFlat_TSPAN18:range=chr11:44927968-449507295'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90chr11:44929290-44951035"	NA	inner
CUST_35871_PI429285431	13.27876	P	12.740133	P	1.45258944288079	0	lncRNA	37262-3_{6001..7144}	n344535|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_83|NULL|-1.3130900|-0.3270477	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344535|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_83|NULL|-1.3130900|-0.3270477	chr7	 22868506	 22869649	+	NA	NA	NA	NA	FAM126A	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr7:22921440-22932065"	NA	inter
CUST_41350_PI429285431	6.1566343	P	6.3264074	P	0.888982484977471	0	lncRNA	42421-1_{1..79}	ENST00000577518 ncrna:miRNA chromosome:GRCh37:20:44333741:44333819:-1 gene:ENSG00000266071 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577518 ncrna:miRNA chromosome:GRCh37:20:44333741:44333819:-1 gene:ENSG00000266071 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 44333741	 44333819	-	ENSG00000266071	ENST00000577518	NA	NA	WFDC10B	NA	chr20:44323741-44333658	inner
LNCA_21_P0002862	1.3292621	A	0.92513067	A	1.323291986759	0	lncRNA	ENST00000478239	NA	NA	NA	NA	XLOC_003169	NA	ENST00000478239	NA	NA	"BROAD Institute lincRNA (XLOC_003169), lincRNA [TCONS_00005792]"	chr3:81295803-81295744	hs|3p12.2	Agilent_HUMAN_G3V2	ENST00000478239	ENST00000478239	chr3	 81295744	 81295803	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014920	6.9694242	P	5.9711905	P	1.99755288658328	0	lncRNA	XR_133136	XR_133136	XR_133136	NA	Hs.565013	LOC100653329	uncharacterized LOC100653329	NA	THC2529302	NA	"PREDICTED: Homo sapiens hypothetical LOC100653329 (LOC100653329), miscRNA [XR_133136]"	chr17:45124879-45124820	hs|17q21.32	Agilent_HUMAN_G3V2	XR_133136	XR_133136	chr17	 45124820	 45124879	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008524	1.630978	A	1.7193937	A	0.940555055724608	0	lncRNA	TCONS_00023050	NA	NA	NA	NA	XLOC_010922	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010922), lincRNA [TCONS_00023050]"	chr14:97933800-97933859	hs|14q32.2	Agilent_HUMAN_G3V2	TCONS_00023050	TCONS_00023050	chr14	 97933800	 97933859	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3211968	0.894792	A	0.9109744	A	0.988845888646541	0	lncRNA	ENST00000556386	XR_110242	XR_110242	NA	Hs.633538	NA	NA	ENST00000556386	THC2480834	NA	"PREDICTED: Homo sapiens hypothetical LOC100133207 (LOC100133207), miscRNA [XR_110242]"	chr14:96222745-96222804	hs|14q32.13	Agilent_HUMAN_G3V2	ENST00000556386	ENST00000556386	chr14	 96222745	 96222804	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003103	7.164865	P	6.911497	P	1.19198658554702	0	lncRNA	TCONS_00006443	NA	NA	NA	NA	XLOC_003050	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003050), lincRNA [TCONS_00006443]"	chr3:12918853-12918794	hs|3p25.2	Agilent_HUMAN_G3V2	TCONS_00006443	TCONS_00006443	chr3	 12918794	 12918853	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012620	3.3535948	P	3.8808792	P	0.693859564754783	0	lncRNA	XR_109844	XR_109844	XR_109844	NA	Hs.170876	LOC345051	hCG38984	ENST00000504313	NA	NA	"PREDICTED: Homo sapiens hCG38984 (LOC345051), miscRNA [XR_109844]"	chr4:147149481-147149540	hs|4q31.22	Agilent_HUMAN_G3V2	XR_109844	XR_109844	chr4	147149481	147149540	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19408_PI429285431	1.0956615	A	0.8904294	A	1.15287180527442	0	lncRNA	21070-1_{1..415}	lnc-CHMP1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CHMP1A-1:1	chr16	 89488570	 89488984	-	lnc-CHMP1A-1	lnc-CHMP1A-1:1	ENSG00000261692.1	RP1-168P16.1	ANKRD11	NA	chr16:89478570-89498634	inter
CUST_9007_PI429285431	1.5842562	A	1.2188505	A	1.28824384538659	0	lncRNA	10535-1_{1..581}	lnc-ZNF136-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-ZNF136-1:4	chr19	 12319086	 12319666	+	lnc-ZNF136-1	lnc-ZNF136-1:4	ENSG00000234773	CTD-2666L21.1	NA	NA	NA	inter
CUST_34613_PI429285431	3.4969056	P	3.5050817	P	0.994348787851945	0	lncRNA	36068-1_{1..846}	n341498|BC065517|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3968|NULL|-0.6613530|-0.1930053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341498|BC065517|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3968|NULL|-0.6613530|-0.1930053	chr8	 53106921	 53107766	+	NA	NA	NA	NA	ST18	NA	chr8:53096921-53122112	inner
CUST_9248_PI429285431	7.6886806	P	7.68614	P	1.00176256121515	0	lncRNA	10757-2_{3001..3612}	lnc-DBH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DBH-1:1	chr9	136573579	136574190	+	lnc-DBH-1	lnc-DBH-1:1	ENSG00000232330	ENST00000416759	SARDH	"hg19_refFlat_SARDH:range=chr9:136529011-1365992955'pad=0,hg19_refFlat_SARDH:range=chr9:136529011-1365992955'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30chr9:136560579-136580642"	NA	inner
LNCA_21_P0000961	7.2689333	P	7.128151	P	1.10250278489523	0	lncRNA	BC042916	NA	BC042916	NA	Hs.639426	XLOC_000110	NA	ENST00000443593	THC2517044	NA	"BROAD Institute lincRNA (XLOC_000110), lincRNA [TCONS_00000174]"	chr1:29197720-29197779	hs|1p35.3	Agilent_HUMAN_G3V2	BC042916	BC042916	chr1	 29197720	 29197779	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19420_PI429285431	0.90409064	A	0.9149884	A	0.992474706263664	0	lncRNA	21081-1_{1..394}	lnc-RP11-778D12.2.1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-778D12.2.1-4:2	chr8	107072609	107073002	-	lnc-RP11-778D12.2.1-4	lnc-RP11-778D12.2.1-4:2	ENSG00000251003.2	RP11-152P17.2	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10"	NA	inter
CUST_10192_PI429285431	1.1940283	A	1.1691647	A	1.01738349875234	0	lncRNA	11717-1_{1..1431}	lnc-BMP7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BMP7-1:1	chr20	 55737006	 55738436	-	lnc-BMP7-1	lnc-BMP7-1:1	XLOC_013811	linc-GCNT7-1	BMP7	NA	chr20:55743809-55747430	inter
CUST_33160_PI429285431	0.89311635	A	0.90033907	A	0.99500610316919	0	lncRNA	34755-1_{1..3000}	n339852|AL832945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2300|NULL|-1.1700800|-0.3063970	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339852|AL832945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2300|NULL|-1.1700800|-0.3063970	chr18	 42644795	 42647794	+	NA	NA	NA	NA	SETBP1	NA	chr18:42634795-42648475	inner
CUST_31817_PI429285431	4.52084	P	4.621904	P	0.932345125366144	0	lncRNA	33555-1_{1..2303}	n338364|AK096988|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|759|NULL|-0.6877280|-0.2092353	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338364|AK096988|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|759|NULL|-0.6877280|-0.2092353	chr14	 69823726	 69826028	+	NA	NA	NA	NA	GALNTL1	NA	chr14:69813726-69821190	inter
CUST_30949_PI429285431	6.3435097	P	5.646105	P	1.62158505760635	0	lncRNA	32737-1_{1..282}	n337060|DQ173461|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342068|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342068|-1.1167200|-0.3693701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337060|DQ173461|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000342068|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000342068|-1.1167200|-0.3693701	chr3	142536962	142537243	-	NA	NA	NA	NA	PCOLCE2	NA	chr3:142536702-142547244	inner
CUST_37207_PI429285431	3.2401106	P	2.752034	A	1.40257371842086	0	lncRNA	38319-1_{1..1482}	n345642|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1191|NULL|-1.3101000|-0.3282950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345642|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1191|NULL|-1.3101000|-0.3282950	chr4	 76642008	 76643489	+	NA	NA	NA	NA	USO1	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.12;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10chr4:76649829-76658661"	NA	inter
CUST_21672_PI429285431	0.8988666	A	0.8889123	A	1.00692365340601	0	lncRNA	23282-1_{1..563}	lnc-LOX-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LOX-3:1	chr5	121719165	121719727	-	lnc-LOX-3	lnc-LOX-3:1	ENSG00000249916.1	CTD-2280E9.1	SNCAIP	NA	chr5:121709165-121729263	inner
CUST_50785_PI429285431	2.4555619	A	2.183144	A	1.2078304084718	0	lncRNA	54441-1_{1..1109}	hg19_lincRNAsTranscripts_TCONS_00061603_H19 range=chr11:2016406-2019045 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00061603_H19 range=chr11:2016406-2019045 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	  2016406	  2017514	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001499	0.921819	A	0.87775975	A	1.03101066047166	0	lncRNA	TCONS_00001488	NA	NA	NA	NA	XLOC_000824	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000824), lincRNA [TCONS_00001488]"	chr1:47972087-47972028	hs|1p33	Agilent_HUMAN_G3V2	TCONS_00001488	TCONS_00001488	chr1	 47972028	 47972087	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6341_PI429285431	8.526104	P	9.7147665	P	0.438709392798123	0	lncRNA	6265-1_{1..1774}	"transcript_id ""ENST00000587762.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000587762.1"" | genecode_v17"	chr19	 13945330	 13947103	-	ENSG00000267519.1	ENST00000587762.1	CTD-3252C9.4	CTD-3252C9.4-001	ZSWIM4	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70chr19:13935330-13943044"	NA	inter
CUST_39557_PI429285431	2.9941878	A	2.5906336	A	1.32276263646442	0	lncRNA	40501-1_{1..642}	n387499|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011fuz.1||-1.0667000|-0.2354467	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387499|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011fuz.1||-1.0667000|-0.2354467	chr6	  1236225	  1236866	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10011_PI429285431	0.90377325	A	0.89160055	A	1.00847316848093	0	lncRNA	11537-1_{1..755}	lnc-TRIML1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIML1-5:1	chr4	189706012	189706766	+	lnc-TRIML1-5	lnc-TRIML1-5:1	XLOC_003836	linc-FRG1-8	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80"	NA	inter
CUST_45614_PI429285431	8.294711	P	7.7953753	P	1.41356252678706	0	lncRNA	49999-1_{1..652}	"gi|336285242|ref|NR_038453.1| Homo sapiens uncharacterized LOC728978 (LOC728978), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336285242|ref|NR_038453.1| Homo sapiens uncharacterized LOC728978 (LOC728978), non-coding RNA"	Chr10	 72976981	 72977632	-	728978	NR_038453.1	NA	NA	NA	NA	NA	inter
CUST_26359_PI429285431	4.4668417	P	4.5411286	P	0.949811480852469	0	lncRNA	27866-1_{1..688}	lnc-EGR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EGR2-1:1	chr10	 64565489	 64566176	-	lnc-EGR2-1	lnc-EGR2-1:1	ENSG00000238280.1	RP11-436D10.3	EGR2	"hg19_refFlat_ADO:range=chr10:64564820-645656325'pad=0,hg19_refFlat_ADO:range=chr10:64564820-645656325'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30chr10:64571756-64575647"	NA	inner
CUST_41135_PI429285431	17.70935	P	18.001608	P	0.816622939759911	0	lncRNA	41920-1_{1..82}	ENST00000385302 ncrna:miRNA chromosome:GRCh37:8:22102475:22102556:-1 gene:ENSG00000208037 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385302 ncrna:miRNA chromosome:GRCh37:8:22102475:22102556:-1 gene:ENSG00000208037 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 22102475	 22102556	-	ENSG00000208037	ENST00000385302	NA	NA	POLR3D	NA	chr8:22102619-22108680	inter
CUST_51788_PI429285431	4.7350235	P	5.1713433	P	0.739017380628221	0	lncRNA	55337-1_{1..547}	hg19_lincRNAsTranscripts_TCONS_l2_00012876 range=chr19:13710595-13734962 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012876 range=chr19:13710595-13734962 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 13710595	 13711141	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10214_PI429285431	8.144325	P	8.380278	P	0.849123908684881	0	lncRNA	11740-1_{1..3000}	lnc-C5orf32-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C5orf32-1:5	chr5	139552892	139555891	+	lnc-C5orf32-1	lnc-C5orf32-1:5	XLOC_004577	linc-C5orf32-1	C5orf32	NA	chr5:139554653-139563608	inter
CUST_15142_PI429285431	1.9739149	A	1.0614191	A	1.88229897921919	0	lncRNA	16805-1_{1..445}	lnc-API5-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-API5-5:4	chr11	 41871667	 41872111	+	lnc-API5-5	lnc-API5-5:4	XLOC_009112	linc-API5-3	NA	NA	NA	inter
CUST_16246_PI429285431	4.161215	P	4.4600177	P	0.812926768571894	0	lncRNA	17951-1_{1..1122}	lnc-AC008271.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC008271.1.1-1:1	chr2	 15925279	 15926400	+	lnc-AC008271.1.1-1	lnc-AC008271.1.1-1:1	XLOC_001363	linc-MYCN-2	NA	NA	NA	inter
CUST_16813_PI429285431	1.299893	A	1.3947686	A	0.936352983339157	0	lncRNA	18520-1_{1..2055}	lnc-TGFBR3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGFBR3-1:1	chr1	 92034970	 92037024	-	lnc-TGFBR3-1	lnc-TGFBR3-1:1	XLOC_000917	linc-HFM1-2	NA	NA	NA	inter
CUST_11215_PI429285431	1.1892111	A	1.0728073	A	1.08402933642773	0	lncRNA	12773-1_{1..485}	lnc-BICC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BICC1-1:1	chr10	 60227208	 60227692	+	lnc-BICC1-1	lnc-BICC1-1:1	XLOC_008488	linc-BICC1	NA	NA	NA	inter
LNCA_19_P00806441	1.1130255	A	0.92129713	A	1.14213118663629	0	lncRNA	TCONS_00022315	NA	NA	NA	NA	XLOC_010725	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010725), lincRNA [TCONS_00022315]"	chr13:111969590-111969531	hs|13q34	Agilent_HUMAN_G3V2	TCONS_00022315	TCONS_00022315	chr13	111969531	111969590	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17099_PI429285431	4.456445	P	4.4007683	P	1.03934649725975	0	lncRNA	18808-1_{1..1807}	lnc-SPIRE2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPIRE2-1:2	chr16	 89888641	 89890447	+	lnc-SPIRE2-1	lnc-SPIRE2-1:2	XLOC_011837	linc-SPIRE2	SPIRE2	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90chr16:89894907-89899071"	NA	inter
LNCA_21_P0009296	2.2514174	A	0.92585504	A	2.50630564041434	0	lncRNA	TCONS_00025558	NA	NA	NA	NA	XLOC_012387	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012387), lincRNA [TCONS_00025558]"	chr17:10178365-10178306	hs|17p13.1	Agilent_HUMAN_G3V2	TCONS_00025558	TCONS_00025558	chr17	 10178306	 10178365	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14642_PI429285431	4.680645	P	5.1790385	P	0.707894612099871	0	lncRNA	16312-1_{1..2041}	lnc-RP11-82I10.1.1-6:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-82I10.1.1-6:8	chr15	 98628851	 98630891	-	lnc-RP11-82I10.1.1-6	lnc-RP11-82I10.1.1-6:8	XLOC_011604	linc-RGMA-3	NA	NA	NA	inter
CUST_45798_PI429285431	7.3988056	P	7.325957	P	1.0517913958112	0	lncRNA	50138-1_{1..2405}	"gi|209693447|ref|NR_024222.1| Homo sapiens kelch repeat and BTB (POZ) domain containing 4 (KBTBD4), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209693447|ref|NR_024222.1| Homo sapiens kelch repeat and BTB (POZ) domain containing 4 (KBTBD4), transcript variant 3, non-coding RNA"	Chr11	 47593749	 47596153	-	55709	NR_024222.1	NA	NA	NA	NA	NA	inter
CUST_32112_PI429285431	9.743738	P	9.404245	P	1.26531185282508	0	lncRNA	33814-1_{1..1619}	n338677|BC041899|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1092|NULL|-0.0710548|-0.2475096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338677|BC041899|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1092|NULL|-0.0710548|-0.2475096	chr2	 11861748	 11863366	-	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60"	NA	inner
CUST_25326_PI429285431	2.375935	A	2.9634364	A	0.665494477811689	0	lncRNA	26858-1_{1..792}	lnc-SERPINB8-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SERPINB8-3:1	chr18	 63533599	 63534390	+	lnc-SERPINB8-3	lnc-SERPINB8-3:1	ENSG00000263720.1	RP11-389J22.1	CDH7	NA	chr18:63523599-63543633	inner
CUST_11740_PI429285431	1.2911258	A	2.1097562	A	0.566979940787136	0	lncRNA	13320-1_{1..1001}	lnc-C7orf53-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C7orf53-2:1	chr7	112266213	112267213	+	lnc-C7orf53-2	lnc-C7orf53-2:1	XLOC_006210	linc-FOXP2-5	NA	NA	NA	inter
CUST_1108_PI429285431	0.9037442	A	0.926794	A	0.984150049838017	0	lncRNA	1097-1_{1..627}	"transcript_id ""ENST00000594626.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594626.1"" | genecode_v17"	chr2	145523928	145524554	+	ENSG00000226674.3	ENST00000594626.1	AC074093.1	AC074093.1-036	NA	NA	NA	inter
CUST_8059_PI429285431	11.473227	P	11.321694	P	1.11074912126148	0	lncRNA	9666-1_{1..302}	lnc-TCF24-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TCF24-2:4	chr8	 67837672	 67837973	-	lnc-TCF24-2	lnc-TCF24-2:4	ENSG00000245910	SNHG6	C8orf45	NA	chr8:67827672-67834283	inter
CUST_5607_PI429285431	0.90913737	A	0.9209094	A	0.991873450987539	0	lncRNA	5535-2_{3001..3226}	"transcript_id ""ENST00000564508.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564508.1"" | genecode_v17"	chr16	 72462847	 72463072	+	ENSG00000260664.1	ENST00000564508.1	AC004158.3	AC004158.3-001	NA	NA	NA	inter
CUST_4548_PI429285431	2.5502818	A	0.90122086	A	3.13629429179651	0	lncRNA	4496-1_{1..489}	"transcript_id ""ENST00000418741.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418741.1"" | genecode_v17"	chr13	 19433967	 19434455	+	ENSG00000227332.1	ENST00000418741.1	RP11-38M15.11	RP11-38M15.11-001	NA	NA	NA	inter
LNCA_21_P0007047	0.9012261	A	0.9208032	A	0.986521843177763	0	lncRNA	TCONS_00018683	NA	NA	NA	NA	XLOC_008408	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008408), lincRNA [TCONS_00018683]"	chr10:20895265-20895981	hs|10p12.31	Agilent_HUMAN_G3V2	TCONS_00018683	TCONS_00018683	chr10	 20895265	 20895981	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22962_PI429285431	0.9010831	A	0.89957136	A	1.00104840751408	0	lncRNA	24536-1_{1..557}	lnc-DIO2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DIO2-5:1	chr14	 79540891	 79541447	-	lnc-DIO2-5	lnc-DIO2-5:1	ENSG00000258829.1	CTD-2243E23.1	NRXN3	NA	chr14:79530891-79551110	inner
LNCA_21_P0002819	0.89834476	A	1.1120471	A	0.862321442713186	0	lncRNA	ENST00000440726	NA	NA	NA	NA	XLOC_002962	NA	ENST00000440726	THC2755118	NA	"BROAD Institute lincRNA (XLOC_002962), lincRNA [TCONS_00005686]"	chr3:187167173-187167232	hs|3q27.3	Agilent_HUMAN_G3V2	ENST00000440726	ENST00000440726	chr3	187167173	187167232	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20270_PI429285431	2.2456417	A	2.384888	A	0.907993389904316	0	lncRNA	21913-1_{1..2247}	lnc-TNPO3-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNPO3-1:6	chr7	128543217	128545463	-	lnc-TNPO3-1	lnc-TNPO3-1:6	ENSG00000135253.8	KCP	KCP	"hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.60chr7:128533217-128550773"	NA	inner
CUST_16389_PI429285431	1.8175055	A	2.140714	A	0.7992903076208	0	lncRNA	18086-2_{3001..5358}	lnc-MKLN1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MKLN1-1:4	chr7	130618416	130620773	+	lnc-MKLN1-1	lnc-MKLN1-1:4	XLOC_006253	linc-MKLN1-1	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-26.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00"	NA	inter
CUST_9142_PI429285431	2.834648	A	3.6502483	P	0.56817202317603	0	lncRNA	10660-1_{1..993}	lnc-C8orf56-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C8orf56-1:9	chr8	104184164	104185156	-	lnc-C8orf56-1	lnc-C8orf56-1:9	ENSG00000247081	RP11-318M2.2	BAALC	NA	chr8:104174164-104194368	inner
LNCA_21_P0004527	5.4007998	P	5.01326	P	1.30816071950354	0	lncRNA	TCONS_00010790	NA	NA	NA	NA	XLOC_004554	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004554), lincRNA [TCONS_00010790]"	chr5:133135107-133135166	hs|5q31.1	Agilent_HUMAN_G3V2	TCONS_00010790	TCONS_00010790	chr5	133135107	133135166	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001846	0.8938581	A	0.9097142	A	0.98906956509635	0	lncRNA	TCONS_00002856	NA	NA	NA	NA	XLOC_001398	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001398), lincRNA [TCONS_00002856]"	chr2:25250327-25250386	hs|2p23.3	Agilent_HUMAN_G3V2	TCONS_00002856	TCONS_00002856	chr2	 25250327	 25250386	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23350_PI429285431	13.393009	P	13.6005335	P	0.866021951947234	0	lncRNA	24919-1_{1..319}	lnc-ATL3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATL3-1:4	chr11	 63533309	 63533627	-	lnc-ATL3-1	lnc-ATL3-1:4	ENSG00000188070.7	C11orf95	RTN3	NA	chr11:63523309-63527363	inner
LNCA_21_P0003012	3.8290288	P	4.0740232	P	0.843819071512199	0	lncRNA	TCONS_00006165	NA	NA	NA	NA	XLOC_002770	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002770), lincRNA [TCONS_00006165]"	chr3:116963179-116963238	hs|3q13.31	Agilent_HUMAN_G3V2	TCONS_00006165	TCONS_00006165	chr3	116963179	116963238	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25131_PI429285431	0.8941225	A	1.866305	A	0.509734356350437	0	lncRNA	26669-1_{1..454}	lnc-RARS-4:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RARS-4:7	chr5	168453316	168453769	+	lnc-RARS-4	lnc-RARS-4:7	ENSG00000248222.1	CTB-174D11.1	SLIT3	NA	chr5:168443316-168463396	inner
CUST_26898_PI429285431	1.9488862	A	0.9931532	A	1.93956483162554	0	lncRNA	28416-1_{1..509}	n323974|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054083|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054083|-1.1286100|-0.2161494	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323974|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054083|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054083|-1.1286100|-0.2161494	chr9	127545853	127546361	-	NA	NA	NA	NA	OLFML2A	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-20.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.50chr9:127539437-127557840"	NA	inner
CUST_12595_PI429285431	1.441848	A	1.3119653	A	1.09420473205422	0	lncRNA	14208-1_{1..316}	lnc-FOXO4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXO4-1:1	chrX	 70166496	 70166811	+	lnc-FOXO4-1	lnc-FOXO4-1:1	XLOC_008007	linc-FOXO4	NA	NA	NA	inter
CUST_29762_PI429285431	2.0541267	A	2.0942762	A	0.972554160775757	0	lncRNA	31524-1_{1..884}	n333450|BC019896|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000089996|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000089996|3.6311400|-0.0168221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333450|BC019896|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000089996|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000089996|3.6311400|-0.0168221	chr3	138664845	138665728	-	NA	NA	NA	NA	FOXL2	NA	chr3:138663066-138665982	inner
CUST_30931_PI429285431	5.531853	P	5.1084213	P	1.3411138352344	0	lncRNA	32719-1_{1..646}	n336990|BC111365|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000339893|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000339893|-1.0702300|-0.0643744	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336990|BC111365|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000339893|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000339893|-1.0702300|-0.0643744	chr8	 55370539	 55371184	-	NA	NA	NA	NA	LOC100129098	"hg19_refFlat_SOX17:range=chr8:55370699-553725555'pad=0,hg19_refFlat_SOX17:range=chr8:55370699-553725555'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.10;hg19_refFlat_SOX18:range=chr20:62679519-626808695'pad=0,hg19_refFlat_SOX18:range=chr20:62679519-626808695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10chr8:55378154-55381798"	NA	inner
CUST_12270_PI429285431	0.8956521	A	0.89166456	A	1.0027677753456	0	lncRNA	13879-1_{1..3000}	lnc-TNFRSF19-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFRSF19-2:1	chr13	 24095810	 24098809	+	lnc-TNFRSF19-2	lnc-TNFRSF19-2:1	XLOC_010311	linc-TNFRSF19-1	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.81;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-25.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70"	NA	inter
CUST_52019_PI429285431	0.90952337	A	0.92404896	A	0.989982144619061	0	lncRNA	55549-1_{1..1131}	hg19_lincRNAsTranscripts_TCONS_l2_00017422 range=chr21:15304510-15311629 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017422 range=chr21:15304510-15311629 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 15304510	 15305640	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46245_PI429285431	1.4175847	A	0.91113997	A	1.4205451930696	0	lncRNA	50484-1_{1..570}	"gi|388556525|ref|NR_046869.1| Homo sapiens long intergenic non-protein coding RNA 331 (LINC00331), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388556525|ref|NR_046869.1| Homo sapiens long intergenic non-protein coding RNA 331 (LINC00331), non-coding RNA"	NA	NA	NA	NA	NA	NR_046869.1	NA	NA	NA	NA	NA	Unknown
CUST_259_PI429201921	6.172471	P	4.893824	P	2.42611342411833	0	lncRNA	191-3_{6001..6478}	TC17002111.hg.1	TCONS_l2_00011533-XLOC_l2_005698 // Broad TUCP // linc-CDRT15L2-3 chr17:+:20328041-20334520 // chr17 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr17:+:20328041-20334520	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00011533-XLOC_l2_005698	linc-CDRT15L2-3	chr17	 20328041	 20334520	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3093_PI429285431	0.89429474	A	0.90487015	A	0.992696485611656	0	lncRNA	3072-1_{1..706}	"transcript_id ""ENST00000518962.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518962.1"" | genecode_v17"	chr8	 47752517	 47753222	+	ENSG00000253314.1	ENST00000518962.1	LINC00293	LINC00293-005	NA	NA	NA	inter
CUST_5038_PI429285431	0.8826172	A	0.8843993	A	0.99876550502614	0	lncRNA	4979-1_{1..516}	"transcript_id ""ENST00000555725.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000555725.1"" | genecode_v17"	chr14	101908413	101908928	+	ENSG00000259082.1	ENST00000555725.1	RP11-168L7.3	RP11-168L7.3-001	NA	NA	NA	inter
CUST_32995_PI429285431	5.1550417	P	5.3113036	P	0.897347135746746	0	lncRNA	34610-1_{1..2038}	n339676|BC040166|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2120|NULL|-0.9680270|-0.2589884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339676|BC040166|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2120|NULL|-0.9680270|-0.2589884	chr20	 41314122	 41316159	+	NA	NA	NA	NA	PTPRT	NA	chr20:41304122-41327202	inner
CUST_34931_PI429285431	2.391793	A	1.120715	A	2.41341831853432	0	lncRNA	36351-1_{1..3000}	n341850|D87077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4330|NULL|11.4935000|-0.1806690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341850|D87077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4330|NULL|11.4935000|-0.1806690	chr6	 42714695	 42717694	+	NA	NA	NA	NA	KIAA0240	NA	chr6:42788794-42836296	inner
CUST_17693_PI429285431	8.130116	P	7.9518356	P	1.13153436476255	0	lncRNA	19422-1_{1..289}	lnc-POLR1E-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLR1E-2:1	chr9	 37510239	 37510527	+	lnc-POLR1E-2	lnc-POLR1E-2:1	XLOC_007347	linc-FRMPD1	POLR1E	NA	chr9:37500239-37503693	inter
CUST_45508_PI429285431	4.027851	P	4.136112	P	0.927705628751766	0	lncRNA	49918-1_{1..946}	"gi|212276225|ref|NR_024411.1| Homo sapiens uncharacterized LOC254312 (LOC254312), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|212276225|ref|NR_024411.1| Homo sapiens uncharacterized LOC254312 (LOC254312), transcript variant 3, non-coding RNA"	Chr10	 10976903	 10977848	-	254312	NR_024411.1	NA	NA	NA	NA	NA	inter
CUST_31129_PI429285431	1.8938162	A	2.7973673	A	0.534569302984182	0	lncRNA	32924-1_{1..601}	n337449|DQ980620|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394675|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394675|1.3567800|-0.1454260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337449|DQ980620|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394675|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394675|1.3567800|-0.1454260	chr2	234216489	234217089	+	NA	NA	NA	NA	SAG	NA	chr2:234216309-234241615	inner
CUST_36625_PI429285431	0.87477374	A	0.87714887	A	0.998355039769645	0	lncRNA	37819-1_{1..916}	n345122|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_671|NULL|-1.2980900|-0.3628802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345122|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_671|NULL|-1.2980900|-0.3628802	chr10	 76956251	 76957166	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6479_PI429285431	1.4982717	A	0.9004911	A	1.51338662494037	0	lncRNA	6420-1_{1..892}	"transcript_id ""ENST00000602653.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602653.1"" | genecode_v17"	chr19	 35890483	 35891374	+	ENSG00000205786.4	ENST00000602653.1	AC002511.1	AC002511.1-006	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.80"	NA	inter
CUST_8439_PI429285431	2.0902317	A	1.9469631	A	1.10440444530609	0	lncRNA	10009-1_{1..2470}	lnc-FAM82A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM82A2-1:1	chr15	 41009534	 41012003	-	lnc-FAM82A2-1	lnc-FAM82A2-1:1	ENSG00000245312	ENST00000500996	RAD51	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00chr15:40999534-41019621"	NA	inner
CUST_27455_PI429285431	0.8996317	A	0.90735507	A	0.994660871941225	0	lncRNA	29025-1_{1..575}	n324631|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280613|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280613|-1.1280900|-0.4264709	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324631|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280613|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280613|-1.1280900|-0.4264709	chr5	 70707368	 70707942	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26164_PI429285431	0.888586	A	0.9025118	A	0.99039380808289	0	lncRNA	27675-1_{1..210}	lnc-PLEKHB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLEKHB1-1:1	chr11	 73433658	 73433867	+	lnc-PLEKHB1-1	lnc-PLEKHB1-1:1	ENSG00000255928.1	RP11-456I15.2	RAB6A	NA	chr11:73423658-73443739	inner
CUST_48151_PI429285431	1.2899053	A	1.1148785	A	1.12898537703257	0	lncRNA	52017-1_{1..1971}	"gi|310110679|ref|XR_111478.1| PREDICTED: Homo sapiens uncharacterized LOC100128343 (LOC100128343), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310110679|ref|XR_111478.1| PREDICTED: Homo sapiens uncharacterized LOC100128343 (LOC100128343), misc_RNA"	NA	NA	NA	NA	NA	XR_111478.1	NA	NA	NA	"hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-57.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00"	NA	Unknown
CUST_9260_PI429285431	0.8841524	A	0.87619925	A	1.00552792640928	0	lncRNA	10767-1_{1..1229}	lnc-MKLN1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MKLN1-2:2	chr7	131633490	131634718	+	lnc-MKLN1-2	lnc-MKLN1-2:2	ENSG00000224865	AC009518.5	NA	NA	NA	inter
CUST_21615_PI429285431	1.2050161	A	1.4363226	A	0.851863097865522	0	lncRNA	23228-1_{1..807}	lnc-RNASEH1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNASEH1-3:1	chr2	  3751467	  3752273	-	lnc-RNASEH1-3	lnc-RNASEH1-3:1	ENSG00000224661.1	AC010907.5	DCDC2C	NA	chr2:3750316-3761743	inter
CUST_3539_PI429285431	0.89077413	A	0.9553414	A	0.956232092172178	0	lncRNA	3509-1_{1..719}	"transcript_id ""ENST00000454034.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454034.1"" | genecode_v17"	chr9	129278696	129279414	+	ENSG00000233721.1	ENST00000454034.1	RP11-205K6.1	RP11-205K6.1-001	FAM125B	NA	chr9:129268696-129269319	inter
CUST_45365_PI429285431	11.420757	P	10.962509	P	1.37387238248252	0	lncRNA	49802-1_{1..3000}	"gi|223633942|ref|NR_026851.1| Homo sapiens SPATA31 subfamily D, member 5, pseudogene (SPATA31D5P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223633942|ref|NR_026851.1| Homo sapiens SPATA31 subfamily D, member 5, pseudogene (SPATA31D5P), non-coding RNA"	Chr9	 84528352	 84531351	+	347127	NR_026851.1	NA	NA	NA	NA	NA	inter
CUST_3897_PI429285431	0.8977643	A	0.9059047	A	0.994373393669482	0	lncRNA	3866-1_{1..448}	"transcript_id ""ENST00000525097.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525097.1"" | genecode_v17"	chr11	 29357425	 29357872	-	ENSG00000254530.1	ENST00000525097.1	RP11-460B17.3	RP11-460B17.3-002	NA	NA	NA	inter
LNCA_21_P0002898	0.8765706	A	0.88077486	A	0.997090071109156	0	lncRNA	ENST00000498241	NA	NA	NA	NA	XLOC_003305	NA	ENST00000498241	NA	NA	"BROAD Institute lincRNA (XLOC_003305), lincRNA [TCONS_00005862]"	chr3:157734866-157734187	hs|3q25.32	Agilent_HUMAN_G3V2	ENST00000498241	ENST00000498241	chr3	157734187	157734866	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7540_PI429285431	12.773861	P	11.746061	P	2.03891269308652	0	lncRNA	9177-1_{1..621}	lnc-SERPINC1-1:29	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:29	chr1	173833813	173834433	-	lnc-SERPINC1-1	lnc-SERPINC1-1:29	ENSG00000234741	GAS5	DARS2	NA	chr1:173823813-173827682	inter
CUST_30289_PI429285431	5.881952	P	5.4017997	P	1.39489091207243	0	lncRNA	32065-1_{1..303}	n335185|AY429542|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254630|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254630|0.8111240|-0.2205311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335185|AY429542|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254630|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254630|0.8111240|-0.2205311	chr5	 74641423	 74641725	+	NA	NA	NA	NA	HMGCR	NA	chr5:74632993-74656646	inner
CUST_37778_PI429285431	0.8872455	A	1.0614998	A	0.886225472830354	0	lncRNA	38876-1_{1..665}	n346288|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1838|NULL|-1.3280900|-0.1944024	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346288|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1838|NULL|-1.3280900|-0.1944024	chr5	 34169129	 34169793	-	NA	NA	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-28.30;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-29.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70"	NA	inter
CUST_48171_PI429285431	1.9571972	A	1.2354484	A	1.64917991936726	0	lncRNA	52036-1_{1..1771}	"gi|410169956|ref|XR_111767.3| PREDICTED: Homo sapiens uncharacterized LOC100509487 (LOC100509487), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410169956|ref|XR_111767.3| PREDICTED: Homo sapiens uncharacterized LOC100509487 (LOC100509487), misc_RNA"	NA	NA	NA	NA	NA	XR_111767.3	NA	NA	NA	NA	NA	Unknown
CUST_39909_PI429285431	6.1031046	P	5.792825	P	1.23994798347337	0	lncRNA	40791-1_{1..3000}	n406648|NR_024179|lncRNA|Homosapiens||RefGeneNoncode|NR_024179||3.4073400|-0.3328091	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406648|NR_024179|lncRNA|Homosapiens||RefGeneNoncode|NR_024179||3.4073400|-0.3328091	chr4	 95373037	 95376036	+	NA	NA	NA	NA	PDLIM5	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00chr4:95373038-95589377"	NA	inner
CUST_43501_PI429285431	5.8103547	P	5.887953	P	0.947633890417264	0	lncRNA	48292-2_{3001..3402}	"gi|197313754|ref|NR_024113.1| Homo sapiens chromosome 1 open reading frame 52 (C1orf52), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|197313754|ref|NR_024113.1| Homo sapiens chromosome 1 open reading frame 52 (C1orf52), transcript variant 2, non-coding RNA"	Chr1	 85718636	 85719037	-	148423	NR_024113.1	NA	NA	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
CUST_2171_PI429285431	0.91419613	A	1.2753515	A	0.778540842153263	0	lncRNA	2162-1_{1..454}	"transcript_id ""ENST00000511474.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511474.1"" | genecode_v17"	chr5	 61173936	 61174389	+	ENSG00000248199.1	ENST00000511474.1	CTD-2244C20.2	CTD-2244C20.2-001	NA	NA	NA	inter
CUST_42702_PI429285431	0.91369146	A	0.94365203	A	0.979447066286466	0	lncRNA	45628-1_{1..71}	ENST00000516109 ncrna:snoRNA chromosome:GRCh37:14:101406904:101406974:1 gene:ENSG00000251918 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516109 ncrna:snoRNA chromosome:GRCh37:14:101406904:101406974:1 gene:ENSG00000251918 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101406904	101406974	+	ENSG00000251918	ENST00000516109	NA	NA	NA	NA	NA	inter
CUST_547_PI429285431	0.8958221	A	0.9053495	A	0.993417867314818	0	lncRNA	539-1_{1..271}	"transcript_id ""ENST00000428399.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428399.1"" | genecode_v17"	chr1	206164084	206164354	+	ENSG00000236889.1	ENST00000428399.1	RP11-38J22.1	RP11-38J22.1-001	FAM72A	NA	chr1:206154084-206155074	inter
CUST_28229_PI429285431	5.791708	P	5.690384	P	1.07275750931228	0	lncRNA	29863-1_{1..347}	n325519|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000109485|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000109485|-0.9449060|-0.2403284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325519|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000109485|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000109485|-0.9449060|-0.2403284	chr19	 40890111	 40890457	+	NA	NA	NA	NA	HIPK4	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr19:40885178-40896094"	NA	inner
LNCA_21_P0001140	0.9037452	A	0.92517763	A	0.985253974979414	0	lncRNA	ENST00000439878	NA	NA	NA	NA	XLOC_000866	NA	ENST00000439878	NA	NA	"BROAD Institute lincRNA (XLOC_000866), lincRNA [TCONS_00000544]"	chr1:69709114-69709055	hs|1p31.1	Agilent_HUMAN_G3V2	ENST00000439878	ENST00000439878	chr1	 69709055	 69709114	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13468_PI429285431	0.88885254	A	0.93031144	A	0.971671864340829	0	lncRNA	15106-1_{1..364}	lnc-ANXA1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANXA1-4:1	chr9	 76221372	 76221735	+	lnc-ANXA1-4	lnc-ANXA1-4:1	XLOC_007406	linc-RORB-3	NA	NA	NA	inter
CUST_41904_PI429285431	0.91546416	A	0.9362601	A	0.985688746458093	0	lncRNA	43632-1_{1..114}	ENST00000385266 ncrna:miRNA chromosome:GRCh37:14:101347344:101347457:1 gene:ENSG00000208001 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385266 ncrna:miRNA chromosome:GRCh37:14:101347344:101347457:1 gene:ENSG00000208001 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101347344	101347457	+	ENSG00000208001	ENST00000385266	NA	NA	RTL1	"hg19_refFlat_RTL1:range=chr14:101347049-1013511255'pad=0,hg19_refFlat_RTL1:range=chr14:101347049-1013511255'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70chr14:101346992-101351184"	NA	inter
LNCA_21_P0008995	5.1867275	P	4.82339	P	1.28639838463526	0	lncRNA	TCONS_00024507	NA	NA	NA	NA	XLOC_011826	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011826), lincRNA [TCONS_00024507]"	chr16:88218442-88218501	hs|16q24.2	Agilent_HUMAN_G3V2	TCONS_00024507	TCONS_00024507	chr16	 88218442	 88218501	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002552	3.1436834	P	3.1742997	P	0.979001991706499	0	lncRNA	TCONS_00004623	NA	NA	NA	NA	XLOC_002534	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002534), lincRNA [TCONS_00004623]"	chr2:238832204-238832145	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_00004623	TCONS_00004623	chr2	238832145	238832204	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45135_PI429285431	0.9216187	A	0.9212028	A	1.00028832146904	0	lncRNA	49615-1_{1..264}	"gi|222446630|ref|NR_003668.2| Homo sapiens defensin, beta 109, pseudogene 1B (DEFB109P1B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|222446630|ref|NR_003668.2| Homo sapiens defensin, beta 109, pseudogene 1B (DEFB109P1B), non-coding RNA"	Chr8	  7170368	  7170631	+	641517	NR_003668.2	NA	NA	NA	NA	NA	inter
CUST_48488_PI429285431	4.5613327	P	3.9305773	P	1.54837551598171	0	lncRNA	52341-1_{1..852}	hg19_lincRNAsTranscripts_TCONS_l2_00000917 range=chr1:240170851-240176558 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000917 range=chr1:240170851-240176558 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	240170851	240171702	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002992	0.8964412	A	0.9134521	A	0.988278184730139	0	lncRNA	TCONS_00006120	NA	NA	NA	NA	XLOC_002725	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002725), lincRNA [TCONS_00006120]"	chr3:86768471-86769972	hs|3p12.1	Agilent_HUMAN_G3V2	TCONS_00006120	TCONS_00006120	chr3	 86768471	 86769972	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16280_PI429285431	0.89944124	A	1.1233153	A	0.856263028727363	0	lncRNA	17985-1_{1..429}	lnc-ARHGEF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGEF2-1:1	chr1	155972232	155972660	-	lnc-ARHGEF2-1	lnc-ARHGEF2-1:1	XLOC_001043	linc-ARHGEF2	SSR2	NA	chr1:155978839-155982355	inter
CUST_6980_PI429285431	1.1562924	A	0.89241576	A	1.20070075521304	0	lncRNA	6928-1_{1..757}	"transcript_id ""ENST00000412218.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412218.1"" | genecode_v17"	chr22	 34413462	 34414218	+	ENSG00000236052.1	ENST00000412218.1	LL22NC03-86D4.1	LL22NC03-86D4.1-001	NA	NA	NA	inter
LNCA_21_P0001470	6.8118935	P	6.6070857	P	1.15253279282335	0	lncRNA	TCONS_00001395	NA	NA	NA	NA	XLOC_000712	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000712), lincRNA [TCONS_00001395]"	chr1:14924456-14924397	hs|1p36.21	Agilent_HUMAN_G3V2	TCONS_00001395	TCONS_00001395	chr1	 14924397	 14924456	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005598	1.7313893	A	0.9013139	A	1.77777827245981	0	lncRNA	XR_108752	XR_108752	XR_108752	NA	Hs.571297	LOC100506236	uncharacterized LOC100506236	NA	THC2701224	NA	"PREDICTED: Homo sapiens hypothetical LOC100506236 (LOC100506236), miscRNA [XR_108752]"	chr7:25870977-25870918	hs|7p15.2	Agilent_HUMAN_G3V2	XR_108752	XR_108752	chr7	 25870918	 25870977	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7313_PI429285431	3.704648	P	3.0410194	A	1.58406177662917	0	lncRNA	8523-1_{1..276}	"transcript_id ""ENST00000477951.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000477951.2"" | genecode_v17"	chr15	 72956896	 72957171	+	ENSG00000244666.2	ENST00000477951.2	RN7SL853P	RN7SL853P-201	GOLGA6B	NA	chr15:72947038-72959738	inner
CUST_46219_PI429285431	2.9423645	P	3.0437293	P	0.932150752909645	0	lncRNA	50460-1_{1..3000}	"gi|397139501|ref|XR_159012.1| PREDICTED: Homo sapiens uncharacterized LOC440137 (FLJ31945), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|397139501|ref|XR_159012.1| PREDICTED: Homo sapiens uncharacterized LOC440137 (FLJ31945), misc_RNA"	Chr13	 50694973	 50697972	+	440137	XR_159012.2	NA	NA	NA	NA	NA	inter
CUST_152_PI429285431	1.6011598	A	2.1858332	A	0.666800272952703	0	lncRNA	143-1_{1..507}	"transcript_id ""ENST00000414210.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000414210.1"" | genecode_v17"	chr1	  6784697	  6785203	+	ENSG00000228750.1	ENST00000414210.1	RP11-242F24.1	RP11-242F24.1-002	NA	NA	NA	inter
CUST_14692_PI429285431	6.49008	P	6.2885394	P	1.14992566212844	0	lncRNA	16360-2_{3001..6000}	lnc-NAP1L2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-NAP1L2-1:6	chrX	 73064217	 73067216	-	lnc-NAP1L2-1	lnc-NAP1L2-1:6	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90"	NA	inter
CUST_28346_PI429285431	0.88881314	A	0.9002916	A	0.992075305093156	0	lncRNA	29992-1_{1..210}	n325652|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045456|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045456|-1.0412600|-0.5553268	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325652|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045456|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045456|-1.0412600|-0.5553268	chr13	 92506910	 92507119	+	NA	NA	NA	NA	GPC5	NA	chr13:92496910-92518180	inner
CUST_13490_PI429285431	0.88035786	A	0.88181967	A	0.998987263683904	0	lncRNA	15130-1_{1..1056}	lnc-DRD5-10:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DRD5-10:6	chr4	 11791382	 11792437	+	lnc-DRD5-10	lnc-DRD5-10:6	XLOC_003457	linc-CPEB2-10	NA	NA	NA	inter
CUST_6153_PI429285431	0.9124358	A	0.92431325	A	0.991800975879474	0	lncRNA	6079-1_{1..463}	"transcript_id ""ENST00000597906.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597906.1"" | genecode_v17"	chr18	 36235183	 36235645	-	ENSG00000268566.1	ENST00000597906.1	RP11-687D19.1	RP11-687D19.1-002	NA	NA	NA	inter
LNCA_21_P0011684	8.66952	P	8.483405	P	1.13769591219024	0	lncRNA	TCONS_l2_00012419	NA	NA	NA	NA	XLOC_l2_006665	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006665), lincRNA [TCONS_l2_00012419]"	chr19:23281010-23281069	hs|19p12	Agilent_HUMAN_G3V2	TCONS_l2_00012419	TCONS_l2_00012419	chr19	 23281010	 23281069	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48672_PI429285431	5.0627584	P	4.633698	P	1.34635643477615	0	lncRNA	52515-1_{1..378}	hg19_lincRNAsTranscripts_TCONS_l2_00014715 range=chr2:96648009-96652774 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014715 range=chr2:96648009-96652774 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 96648009	 96648386	-	NA	NA	NA	NA	LOC400986	NA	chr2:96638009-96657980	inter
CUST_36659_PI429285431	5.004334	P	3.3527808	P	3.14171693203514	0	lncRNA	37850-1_{1..993}	n345155|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_704|NULL|-1.2846900|-0.3048101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345155|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_704|NULL|-1.2846900|-0.3048101	chr11	121231366	121232358	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35474_PI429285431	11.215769	P	10.291582	P	1.8976145803394	0	lncRNA	36883-1_{1..2075}	n342571|AK055738|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5070|NULL|-1.1551600|-0.4959517	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342571|AK055738|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5070|NULL|-1.1551600|-0.4959517	chr18	 18635360	 18637434	-	NA	NA	NA	NA	ROCK1	NA	chr18:18625360-18647153	inner
CUST_5424_PI429285431	0.8749144	A	0.878474	A	0.997535714644763	0	lncRNA	5358-1_{1..1313}	"transcript_id ""ENST00000569215.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569215.1"" | genecode_v17"	chr16	 10445297	 10446609	-	ENSG00000260756.1	ENST00000569215.1	RP11-609N14.1	RP11-609N14.1-001	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-36.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_38543_PI429285431	4.9678793	P	5.1643806	P	0.872664309692336	0	lncRNA	39551-1_{1..3000}	n383249|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002kgk.3||0.3046560|-0.2439841	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383249|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002kgk.3||0.3046560|-0.2439841	chr17	   116622	   119621	+	NA	NA	NA	NA	RPH3AL	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80chr17:106622-129723"	NA	inner
LNCA_21_P0004584	1.8933291	A	0.87981904	A	2.01881688748237	0	lncRNA	ENST00000521128	NA	AK074818	NA	Hs.638681	XLOC_005087	NA	ENST00000521128	THC2500551	NA	"BROAD Institute lincRNA (XLOC_005087), lincRNA [TCONS_00011090]"	chr5:173146208-173146149	hs|5q35.2	Agilent_HUMAN_G3V2	ENST00000521128	ENST00000521128	chr5	173146149	173146208	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004324	0.92928433	A	0.87952983	A	1.03508877024818	0	lncRNA	TCONS_00010158	NA	NA	NA	NA	XLOC_004624	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004624), lincRNA [TCONS_00010158]"	chr5:162181214-162181273	hs|5q34	Agilent_HUMAN_G3V2	TCONS_00010158	TCONS_00010158	chr5	162181214	162181273	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008049	5.27953	P	5.4181437	P	0.908391618603176	0	lncRNA	TCONS_00021754	NA	NA	NA	NA	XLOC_010348	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010348), lincRNA [TCONS_00021754]"	chr13:38064869-38064928	hs|13q13.3	Agilent_HUMAN_G3V2	TCONS_00021754	TCONS_00021754	chr13	 38064869	 38064928	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12367_PI429285431	3.2924047	P	3.0877643	A	1.15239906893081	0	lncRNA	13979-1_{1..558}	lnc-VSTM2B-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VSTM2B-7:1	chr19	 29388744	 29389301	+	lnc-VSTM2B-7	lnc-VSTM2B-7:1	XLOC_013026	linc-VSTM2B-7	NA	NA	NA	inter
CUST_45450_PI429285431	4.799152	P	5.3422775	P	0.6862825133347	0	lncRNA	49867-1_{1..3000}	"gi|373938435|ref|NR_046107.1| Homo sapiens uncharacterized LOC401557 (LOC401557), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373938435|ref|NR_046107.1| Homo sapiens uncharacterized LOC401557 (LOC401557), non-coding RNA"	Chr9	138073455	138076454	+	401557	NR_046107.1	NA	NA	NA	NA	NA	inter
CUST_12338_PI429285431	1.3919126	A	1.5383545	A	0.903475948110229	0	lncRNA	13950-1_{1..466}	lnc-GCNT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GCNT1-2:1	chr9	 79179294	 79179759	+	lnc-GCNT1-2	lnc-GCNT1-2:1	XLOC_007415	linc-FOXB2-2	NA	NA	NA	inter
CUST_39014_PI429285431	2.885971	A	3.706261	P	0.566328092076693	0	lncRNA	39993-1_{1..1135}	n385331|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wpy.1||-1.2462600|-0.2328219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385331|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wpy.1||-1.2462600|-0.2328219	chr8	  2147222	  2148356	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_864_PI429285431	0.88108164	A	0.8765564	A	1.00314158180445	0	lncRNA	858-1_{1..577}	"transcript_id ""ENST00000448713.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448713.1"" | genecode_v17"	chr2	 47419544	 47420120	-	ENSG00000234690.2	ENST00000448713.1	AC073283.4	AC073283.4-002	NA	NA	NA	inter
CUST_12703_PI429285431	0.8900337	A	0.9039415	A	0.990406164956139	0	lncRNA	14320-1_{1..1856}	lnc-DLK1-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLK1-9:1	chr14	101427364	101429219	+	lnc-DLK1-9	lnc-DLK1-9:1	XLOC_010934	linc-DIO3-6	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30"	NA	inter
CUST_47283_PI429285431	4.6794953	P	4.6152706	P	1.04552292789991	0	lncRNA	51352-1_{1..2129}	"gi|334358855|ref|NR_038341.1| Homo sapiens STK4 antisense RNA 1 (head to head) (STK4-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|334358855|ref|NR_038341.1| Homo sapiens STK4 antisense RNA 1 (head to head) (STK4-AS1), non-coding RNA"	Chr20	 43592435	 43594563	-	100505826	NR_038341.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80"	NA	inter
CUST_11792_PI429285431	1.1189255	A	0.9075377	A	1.15780139504796	0	lncRNA	13373-1_{1..2888}	lnc-FOXD4L6-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXD4L6-1:3	chr9	 69180823	 69183710	-	lnc-FOXD4L6-1	lnc-FOXD4L6-1:3	XLOC_007714	linc-FAM75A7-8	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50"	NA	inter
CUST_17882_PI429285431	0.9035174	A	0.8866113	A	1.01178734516625	0	lncRNA	19619-1_{1..3000}	lnc-OIP5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OIP5-1:1	chr15	 41588773	 41591772	-	lnc-OIP5-1	lnc-OIP5-1:1	XLOC_011448	linc-EXD1	OIP5	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.91;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70chr15:41601466-41608741"	NA	inter
CUST_41219_PI429285431	6.38518	P	6.633953	P	0.841611894794948	0	lncRNA	42109-1_{1..79}	ENST00000583919 ncrna:miRNA chromosome:GRCh37:8:42751340:42751418:-1 gene:ENSG00000266044 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583919 ncrna:miRNA chromosome:GRCh37:8:42751340:42751418:-1 gene:ENSG00000266044 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 42751340	 42751418	-	ENSG00000266044	ENST00000583919	NA	NA	HOOK3	NA	chr8:42752033-42761418	inter
CUST_42341_PI429285431	0.886915	A	0.88133216	A	1.00387722687733	0	lncRNA	45000-1_{1..64}	ENST00000516303 ncrna:snoRNA chromosome:GRCh37:17:28573775:28573838:-1 gene:ENSG00000252112 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516303 ncrna:snoRNA chromosome:GRCh37:17:28573775:28573838:-1 gene:ENSG00000252112 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 28573775	 28573838	-	ENSG00000252112	ENST00000516303	NA	NA	BLMH	NA	chr17:28575213-28583838	inter
LNCA_21_P0014572	4.387275	P	4.0687547	P	1.24705085519113	0	lncRNA	XR_110339	XR_110339	XR_110339	NA	NA	LOC100506125	uncharacterized LOC100506125	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506125, transcript variant 1 (LOC100506125), miscRNA [XR_110339]"	chr12:49184273-49184332	hs|12q13.12	Agilent_HUMAN_G3V2	XR_110339	XR_110339	chr12	 49184273	 49184332	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48046_PI429285431	8.480155	P	8.218373	P	1.19895873014226	0	lncRNA	51925-2_{3001..4156}	"gi|410170029|ref|XR_133245.3| PREDICTED: Homo sapiens TTLL10 antisense RNA 1 (TTLL10-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410170029|ref|XR_133245.3| PREDICTED: Homo sapiens TTLL10 antisense RNA 1 (TTLL10-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_133245.3	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80"	NA	Unknown
CUST_2002_PI429285431	3.1459801	P	3.0214114	P	1.09018176932978	0	lncRNA	1993-1_{1..741}	"transcript_id ""ENST00000604660.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604660.1"" | genecode_v17"	chr4	185428072	185428812	-	ENSG00000271538.1	ENST00000604660.1	RP11-326I11.4	RP11-326I11.4-002	NA	NA	NA	inter
CUST_7042_PI429285431	3.038617	A	3.4102876	P	0.772886997135249	0	lncRNA	6987-1_{1..786}	"transcript_id ""ENST00000438867.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438867.1"" | genecode_v17"	chrX	 39260506	 39261291	-	ENSG00000234191.1	ENST00000438867.1	RP11-157D23.2	RP11-157D23.2-001	NA	NA	NA	inter
CUST_30226_PI429285431	7.848075	P	7.771702	P	1.05436398742991	0	lncRNA	32001-1_{1..252}	n335089|AJ844625|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249429|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249429|0.7478640|-0.2391992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335089|AJ844625|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249429|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249429|0.7478640|-0.2391992	chr17	 17077338	 17077589	+	NA	NA	NA	NA	MPRIP	NA	chr17:17067338-17089822	inner
CUST_27053_PI429285431	0.9122665	A	0.89920235	A	1.00909650271831	0	lncRNA	28587-1_{1..886}	n324164|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051538|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051538|-0.8474550|-0.4675566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324164|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051538|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051538|-0.8474550|-0.4675566	chr9	  3171588	  3172473	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46314_PI429285431	5.912057	P	4.3917403	P	2.86854012802381	0	lncRNA	50545-1_{1..3000}	"gi|402471892|ref|NR_073129.1| Homo sapiens kinectin 1 (kinesin receptor) (KTN1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402471892|ref|NR_073129.1| Homo sapiens kinectin 1 (kinesin receptor) (KTN1), transcript variant 1, non-coding RNA"	Chr14	 56046925	 56049924	+	3895	NR_073129.1	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
LNCA_21_P0005062	6.0505285	P	6.496083	P	0.734302033326346	0	lncRNA	TCONS_00012298	NA	NA	NA	NA	XLOC_005854	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005854), lincRNA [TCONS_00012298]"	chr6:139613413-139613354	hs|6q24.1	Agilent_HUMAN_G3V2	TCONS_00012298	TCONS_00012298	chr6	139613354	139613413	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33594_PI429285431	6.386235	P	6.359248	P	1.0188820155178	0	lncRNA	35159-1_{1..221}	n340350|AF009308|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2811|NULL|-1.0719200|-0.2275856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340350|AF009308|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2811|NULL|-1.0719200|-0.2275856	chr5	  9230470	  9230690	-	NA	NA	NA	NA	SEMA5A	NA	chr5:9220470-9240691	inner
CUST_9972_PI429285431	0.87583464	A	0.8779231	A	0.998553437121463	0	lncRNA	11496-1_{1..1369}	lnc-ITGB1BP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ITGB1BP1-1:1	chr2	  9346356	  9347724	-	lnc-ITGB1BP1-1	lnc-ITGB1BP1-1:1	XLOC_001980	linc-MBOAT2-2	ASAP2	NA	chr2:9346894-9356598	inter
CUST_20108_PI429285431	8.7338295	P	8.728737	P	1.00353608928135	0	lncRNA	21756-1_{1..675}	lnc-MCTP2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MCTP2-7:1	chr15	 95399899	 95400573	+	lnc-MCTP2-7	lnc-MCTP2-7:1	ENSG00000260521.1	CTD-2576F9.2	NA	NA	NA	inter
CUST_20101_PI429285431	0.8913317	A	0.92227036	A	0.978783265075138	0	lncRNA	21749-1_{1..1097}	lnc-AC139426.2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC139426.2-1:1	chr15	 32727331	 32728427	-	lnc-AC139426.2-1	lnc-AC139426.2-1:1	ENSG00000215304.2	ULK4P1	LOC728047	NA	chr15:32726949-32737434	inter
CUST_6892_PI429285431	0.9076822	A	1.0485983	A	0.906943070717746	0	lncRNA	6842-1_{1..967}	"transcript_id ""ENST00000427188.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427188.1"" | genecode_v17"	chr21	 44890313	 44891279	-	ENSG00000185186.4	ENST00000427188.1	LINC00313	LINC00313-006	NA	NA	NA	inter
CUST_49151_PI429285431	4.8765283	P	5.1786966	P	0.811032537702741	0	lncRNA	52977-1_{1..284}	hg19_lincRNAsTranscripts_TCONS_l2_00020732 range=chr4:121249569-121288829 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020732 range=chr4:121249569-121288829 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	121249569	121249852	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006464	5.7012577	P	6.0881705	P	0.764764361764032	0	lncRNA	ENST00000456631	NA	NA	NA	NA	XLOC_008246	NA	ENST00000456631	NA	NA	"BROAD Institute lincRNA (XLOC_008246), lincRNA [TCONS_00017094]"	chrX:136638409-136638350	hs|Xq26.3	Agilent_HUMAN_G3V2	ENST00000456631	ENST00000456631	chrX	136638350	136638409	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45704_PI429285431	3.6306798	P	4.4044757	P	0.584876569445101	0	lncRNA	50073-1_{1..2078}	"gi|224028260|ref|NR_026967.1| Homo sapiens uncharacterized LOC143666 (LOC143666), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224028260|ref|NR_026967.1| Homo sapiens uncharacterized LOC143666 (LOC143666), non-coding RNA"	Chr11	   573808	   575885	-	143666	NR_026967.1	NA	NA	NA	NA	NA	inter
CUST_25012_PI429285431	1.5927079	A	0.90252286	A	1.61349045138491	0	lncRNA	26552-1_{1..400}	lnc-GPRC5A-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPRC5A-2:6	chr12	 13106674	 13107073	+	lnc-GPRC5A-2	lnc-GPRC5A-2:6	ENSG00000256893.1	RP11-392P7.6	GPRC5D	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20chr12:13096674-13103318"	NA	inter
CUST_16890_PI429285431	6.543399	P	6.5521765	P	0.993934371277168	0	lncRNA	18599-1_{1..227}	lnc-C18orf62-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C18orf62-2:1	chr18	 73221840	 73222066	-	lnc-C18orf62-2	lnc-C18orf62-2:1	XLOC_012886	linc-C18orf62-7	NA	NA	NA	inter
CUST_9751_PI429285431	4.8830147	P	4.9774513	P	0.936637951052551	0	lncRNA	11268-1_{1..368}	lnc-CALM1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CALM1-1:8	chr14	 90923363	 90923730	+	lnc-CALM1-1	lnc-CALM1-1:8	XLOC_010902	linc-C14orf159-3	NA	NA	NA	inter
CUST_11583_PI429285431	1.990135	A	2.0099213	A	0.98637880157768	0	lncRNA	13162-1_{1..623}	lnc-JUN-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-JUN-4:1	chr1	 59553687	 59554309	-	lnc-JUN-4	lnc-JUN-4:1	XLOC_000850	linc-JUN-2	NA	NA	NA	inter
CUST_34243_PI429285431	2.2796738	A	3.5929406	P	0.402408643827375	0	lncRNA	35749-1_{1..367}	n341100|AF086444|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3566|NULL|-1.0909400|-0.3087078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341100|AF086444|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3566|NULL|-1.0909400|-0.3087078	chr11	 94292183	 94292549	+	NA	NA	NA	NA	PIWIL4	NA	chr11:94300474-94302540	inter
LNCA_21_P0006169	6.221663	P	5.8956423	P	1.25355100644532	0	lncRNA	XR_108969	XR_108969	XR_108969	NA	Hs.553987	LOC100506834	uncharacterized LOC100506834	NA	THC2603711	NA	"PREDICTED: Homo sapiens hypothetical LOC100506834 (LOC100506834), miscRNA [XR_108969]"	chr9:89563615-89563674	hs|9q21.33	Agilent_HUMAN_G3V2	XR_108969	XR_108969	chr9	 89563615	 89563674	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19162_PI429285431	0.90212876	A	1.1341227	A	0.851457284263842	0	lncRNA	20831-1_{1..1187}	lnc-ARHGAP15-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARHGAP15-4:1	NA	NA	     1186	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26159_PI429285431	0.89877117	A	0.91913223	A	0.985985913165257	0	lncRNA	27670-1_{1..455}	lnc-COQ10B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COQ10B-2:1	chr2	198063642	198064096	+	lnc-COQ10B-2	lnc-COQ10B-2:1	ENSG00000231621.1	AC013264.2	ANKRD44	NA	chr2:198053642-198073997	inner
CUST_12355_PI429285431	3.4559271	P	3.1669762	P	1.2217515204531	0	lncRNA	13967-1_{1..246}	lnc-POM121L12-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POM121L12-4:1	chr7	 52019881	 52020126	+	lnc-POM121L12-4	lnc-POM121L12-4:1	XLOC_006098	linc-POM121L12-4	NA	NA	NA	inter
CUST_48662_PI429285431	5.3303156	P	5.2127204	P	1.08492491445163	0	lncRNA	52506-1_{1..1340}	hg19_lincRNAsTranscripts_TCONS_l2_00013806 range=chr2:96465026-96468984 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013806 range=chr2:96465026-96468984 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 96465026	 96466365	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47345_PI429285431	7.3099713	P	7.4989214	P	0.87724389035864	0	lncRNA	51397-1_{1..676}	"gi|334191703|ref|NR_038328.1| Homo sapiens tektin 4 pseudogene 2 (TEKT4P2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|334191703|ref|NR_038328.1| Homo sapiens tektin 4 pseudogene 2 (TEKT4P2), transcript variant 2, non-coding RNA"	Chr21	  9907189	  9907864	-	100132288	NR_038328.1	NA	NA	NA	NA	NA	inter
CUST_16633_PI429285431	2.2396526	A	2.8344908	A	0.662118708450666	0	lncRNA	18335-1_{1..3000}	lnc-CHST12-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CHST12-1:4	chr7	  2485589	  2488588	+	lnc-CHST12-1	lnc-CHST12-1:4	XLOC_005968	linc-LFNG	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80"	NA	inter
CUST_18379_PI429285431	0.88831115	A	1.0529228	A	0.892168644363249	0	lncRNA	20106-2_{3001..5427}	lnc-WDR3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR3-1:1	chr1	118409778	118412204	+	lnc-WDR3-1	lnc-WDR3-1:1	ENSG00000246170	AL122007.1	GDAP2	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.72;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30chr1:118406107-118421617"	NA	inner
CUST_20486_PI429285431	7.296896	P	7.2770586	P	1.0138452071848	0	lncRNA	22129-1_{1..352}	lnc-ALK-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALK-1:2	chr2	 30363506	 30363857	-	lnc-ALK-1	lnc-ALK-1:2	ENSG00000233862.1	AC016907.3	YPEL5	NA	chr2:30369750-30373532	inter
CUST_27438_PI429285431	1.0758493	A	0.9051207	A	1.12562681313892	0	lncRNA	29006-1_{1..789}	n324611|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039687|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039687|-1.0894300|-0.1833501	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324611|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039687|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039687|-1.0894300|-0.1833501	chr6	  3539479	  3540267	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004540	0.89503235	A	0.911423	A	0.988703161120201	0	lncRNA	TCONS_00010837	NA	NA	NA	NA	XLOC_004644	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004644), lincRNA [TCONS_00010837]"	chr5:173205384-173205443	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_00010837	TCONS_00010837	chr5	173205384	173205443	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29974_PI429285431	3.3467212	P	3.5776408	P	0.85209157999176	0	lncRNA	31740-1_{1..427}	n334229|S63833|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216031|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216031|0.3235210|-0.1601562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334229|S63833|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216031|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216031|0.3235210|-0.1601562	chr1	 41945125	 41945551	-	NA	NA	NA	NA	EDN2	NA	chr1:41944446-41950344	inner
LNCA_21_P0006270	3.3401859	P	3.700716	P	0.778878338106322	0	lncRNA	ENST00000377547	NA	NA	NA	NA	XLOC_007698	NA	ENST00000377547	NA	NA	"BROAD Institute lincRNA (XLOC_007698), lincRNA [TCONS_00016324]"	chr9:67781349-67781408	hs|9q13	Agilent_HUMAN_G3V2	ENST00000377547	ENST00000377547	chr9	 67781349	 67781408	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008065	5.4659424	P	5.674219	P	0.865570598511202	0	lncRNA	TCONS_00021794	NA	NA	NA	NA	XLOC_010397	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010397), lincRNA [TCONS_00021794]"	chr13:53650713-53650772	hs|13q14.3	Agilent_HUMAN_G3V2	TCONS_00021794	TCONS_00021794	chr13	 53650713	 53650772	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3402211	2.4596338	A	3.2421403	P	0.581355883072417	0	lncRNA	XR_110895	XR_110895	XR_110895	100506220	Hs.666398	LOC100506220	uncharacterized LOC100506220	ENST00000534168	THC2652947	NA	"PREDICTED: Homo sapiens hypothetical LOC100506220 (LOC100506220), miscRNA [XR_110895]"	chr11:78154949-78155008	hs|11q14.1	Agilent_HUMAN_G3V2	XR_110895	XR_110895	chr11	 78154949	 78155008	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003248	0.88326055	A	0.8938554	A	0.992683109333846	0	lncRNA	TCONS_00006932	NA	NA	NA	NA	XLOC_002773	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002773), lincRNA [TCONS_00006932]"	chr3:117438963-117439022	hs|3q13.32	Agilent_HUMAN_G3V2	TCONS_00006932	TCONS_00006932	chr3	117438963	117439022	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34900_PI429285431	1.6756109	A	2.2425659	A	0.675040047827764	0	lncRNA	36325-1_{1..3000}	n341817|AL833364|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4296|NULL|2.2604700|-0.1897818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341817|AL833364|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4296|NULL|2.2604700|-0.1897818	chr12	  7260903	  7263902	+	NA	NA	NA	NA	C1RL	"hg19_refFlat_C1RL:range=chr12:7248987-72617765'pad=0,hg19_refFlat_C1RL:range=chr12:7248987-72617765'pad=0 3'pad=0 strand=- repeatMasking=none,-99.60;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-53.60chr12:7250903-7261869"	NA	inner
CUST_1509_PI429285431	5.809573	P	6.016369	P	0.86645936684718	0	lncRNA	1496-1_{1..521}	"transcript_id ""ENST00000486545.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000486545.1"" | genecode_v17"	chr3	154687072	154687592	-	ENSG00000243953.1	ENST00000486545.1	RP11-439C8.2	RP11-439C8.2-001	NA	NA	NA	inter
LNCA_21_P0012161	1.8436852	A	0.88982356	A	1.93705059894664	0	lncRNA	ENST00000448859	NA	BC033557	NA	Hs.385604	XLOC_l2_008759	NA	ENST00000448859	THC2605935	NA	"BROAD Institute lincRNA (XLOC_l2_008759), lincRNA [TCONS_l2_00016848]"	chr20:10856675-10856616	hs|20p12.2	Agilent_HUMAN_G3V2	ENST00000448859	ENST00000448859	chr20	 10856616	 10856675	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27235_PI429285431	0.88015234	A	0.8892395	A	0.993721056141313	0	lncRNA	28782-1_{1..703}	n324373|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042410|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042410|-1.0677100|-0.2627450	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324373|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042410|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042410|-1.0677100|-0.2627450	chr6	138092999	138093701	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004882	0.87641	A	0.88053465	A	0.997145093500207	0	lncRNA	TCONS_00011815	NA	NA	NA	NA	XLOC_005289	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005289), lincRNA [TCONS_00011815]"	chr6:42420507-42423732	hs|6p21.1	Agilent_HUMAN_G3V2	TCONS_00011815	TCONS_00011815	chr6	 42420507	 42423732	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004412	5.555604	P	5.952741	P	0.759363731419694	0	lncRNA	TCONS_00010375	NA	NA	NA	NA	XLOC_004878	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004878), lincRNA [TCONS_00010375]"	chr5:72250854-72236832	hs|5q13.2	Agilent_HUMAN_G3V2	TCONS_00010375	TCONS_00010375	chr5	 72236832	 72250854	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52148_PI429285431	4.984868	P	5.982719	P	0.500745341628187	0	lncRNA	55672-1_{1..434}	hg19_lincRNAsTranscripts_TCONS_l2_00017629 range=chr22:21457344-21472546 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017629 range=chr22:21457344-21472546 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 21457344	 21457777	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003219	7.0959864	P	7.1387568	P	0.970788955230717	0	lncRNA	TCONS_00006794	NA	NA	NA	NA	XLOC_002587	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002587), lincRNA [TCONS_00006794]"	chr3:16569656-16569715	hs|3p24.3	Agilent_HUMAN_G3V2	TCONS_00006794	TCONS_00006794	chr3	 16569656	 16569715	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8143_PI429285431	1.0538895	A	0.87644565	A	1.13087843217853	0	lncRNA	9746-1_{1..498}	lnc-LGALSL-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LGALSL-2:2	chr2	 64478253	 64478750	+	lnc-LGALSL-2	lnc-LGALSL-2:2	ENSG00000225889	AC074289.1	NA	NA	NA	inter
CUST_20995_PI429285431	2.254424	A	1.8075387	A	1.3630942315557	0	lncRNA	22624-1_{1..468}	lnc-NT5DC3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NT5DC3-2:1	chr12	104062990	104063457	-	lnc-NT5DC3-2	lnc-NT5DC3-2:1	ENSG00000257766.1	RP11-341G23.3	STAB2	"hg19_refFlat_STAB2:range=chr12:103981255-1041601145'pad=0,hg19_refFlat_STAB2:range=chr12:103981255-1041601145'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80chr12:104052990-104073184"	NA	inner
CUST_5767_PI429285431	5.0126047	P	5.0583553	P	0.96878564960547	0	lncRNA	5691-1_{1..681}	"transcript_id ""ENST00000602353.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602353.1"" | genecode_v17"	chr17	 19799903	 19800583	-	ENSG00000270091.1	ENST00000602353.1	RP11-78O7.2	RP11-78O7.2-002	AKAP10	NA	chr17:19808749-19810583	inter
CUST_35094_PI429285431	0.88493085	A	0.8850248	A	0.999934880942724	0	lncRNA	36501-1_{1..1248}	n342060|BC038735|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4541|NULL|-1.0263000|-0.2914190	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342060|BC038735|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4541|NULL|-1.0263000|-0.2914190	chr12	126885337	126886584	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9052_PI429285431	0.89892614	A	0.9053017	A	0.995590548864048	0	lncRNA	10576-1_{1..508}	lnc-ZMAT3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZMAT3-2:1	chr3	178578082	178578589	-	lnc-ZMAT3-2	lnc-ZMAT3-2:1	ENSG00000237978	RP11-385J1.2	NA	NA	NA	inter
CUST_36785_PI429285431	3.2878113	P	4.0514307	P	0.589016763885167	0	lncRNA	37957-1_{1..542}	n345264|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_813|NULL|-1.2938800|-0.2488984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345264|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_813|NULL|-1.2938800|-0.2488984	chr14	 64123506	 64124047	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10159_PI429285431	0.8815818	A	0.8790514	A	1.00175547867746	0	lncRNA	11684-1_{1..559}	lnc-C3orf38-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C3orf38-2:1	chr3	 88431735	 88432293	+	lnc-C3orf38-2	lnc-C3orf38-2:1	XLOC_002727	linc-EPHA3	NA	NA	NA	inter
CUST_17350_PI429285431	4.4338155	P	4.2933826	P	1.10223580689975	0	lncRNA	19070-1_{1..488}	lnc-MTIF3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTIF3-1:1	chr13	 28042896	 28043383	-	lnc-MTIF3-1	lnc-MTIF3-1:1	XLOC_010545	linc-MTIF3	NA	NA	NA	inter
CUST_18056_PI429285431	6.441536	P	6.5415616	P	0.9330164354165	0	lncRNA	19791-1_{1..561}	lnc-THBS4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THBS4-2:1	chr5	 79263410	 79263970	+	lnc-THBS4-2	lnc-THBS4-2:1	XLOC_004442	linc-THBS4-1	MTX3	NA	chr5:79272539-79273449	inter
CUST_9652_PI429285431	1.4838604	A	1.3749597	A	1.07840620296396	0	lncRNA	11170-1_{1..646}	lnc-ANKRD50-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD50-4:1	chr4	124949137	124949782	-	lnc-ANKRD50-4	lnc-ANKRD50-4:1	XLOC_004061	linc-NUDT6-2	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10"	NA	inter
CUST_48407_PI429285431	1.6666164	A	2.3191385	A	0.636167202062791	0	lncRNA	52260-1_{1..343}	hg19_lincRNAsTranscripts_TCONS_l2_00001495 range=chr1:143194311-143195990 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001495 range=chr1:143194311-143195990 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	143194311	143194653	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1763_PI429285431	3.1848147	P	3.5930197	P	0.753560369880865	0	lncRNA	1748-1_{1..612}	"transcript_id ""ENST00000511875.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511875.1"" | genecode_v17"	chr4	 52910971	 52911582	+	ENSG00000251040.1	ENST00000511875.1	RP11-535C7.1	RP11-535C7.1-001	SPATA18	NA	chr4:52917593-52923120	inter
CUST_40912_PI429285431	1.2314489	A	1.9446757	A	0.609954359247469	0	lncRNA	41598-1_{1..335}	n410755|NR_038207|lncRNA|Homosapiens||RefGeneNoncode|NR_038207||-0.9004130|-0.2396807	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410755|NR_038207|lncRNA|Homosapiens||RefGeneNoncode|NR_038207||-0.9004130|-0.2396807	chr8	 96281063	 96281397	+	NA	NA	NA	NA	C8orf37	NA	chr8:96271063-96281462	inter
CUST_6879_PI429285431	0.90104043	A	0.8972952	A	1.00259936812938	0	lncRNA	6830-1_{1..718}	"transcript_id ""ENST00000589300.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589300.1"" | genecode_v17"	chr21	 43133016	 43133733	-	ENSG00000236384.3	ENST00000589300.1	LINC00479	LINC00479-004	NA	NA	NA	inter
CUST_15348_PI429285431	3.740196	P	3.7321384	P	1.00560072848524	0	lncRNA	17029-1_{1..326}	lnc-TOMM20-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TOMM20-1:3	chr1	235116403	235116728	-	lnc-TOMM20-1	lnc-TOMM20-1:3	XLOC_001266	linc-IRF2BP2-3	NA	NA	NA	inter
CUST_46146_PI429285431	10.235309	P	9.758975	P	1.39120401368304	0	lncRNA	50395-1_{1..2081}	"gi|378404898|ref|NR_046372.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 4 (P2RX4), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|378404898|ref|NR_046372.1| Homo sapiens purinergic receptor P2X, ligand-gated ion channel, 4 (P2RX4), transcript variant 3, non-coding RNA"	Chr12	121647664	121649744	+	5025	NR_046372.1	NA	NA	NA	NA	NA	inter
CUST_43723_PI429285431	3.8802855	P	1.5151596	A	5.15197609710544	0	lncRNA	48468-1_{1..3000}	"gi|315259087|ref|NR_037667.1| Homo sapiens integrator complex subunit 7 (INTS7), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315259087|ref|NR_037667.1| Homo sapiens integrator complex subunit 7 (INTS7), transcript variant 5, non-coding RNA"	Chr1	212113741	212116740	-	25896	NR_037667.1	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70"	NA	inter
CUST_4627_PI429285431	2.4625702	A	2.2282772	A	1.1763301294173	0	lncRNA	4573-1_{1..852}	"transcript_id ""ENST00000603464.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603464.1"" | genecode_v17"	chr13	 52908430	 52909281	+	ENSG00000271564.1	ENST00000603464.1	RP13-444H2.1	RP13-444H2.1-001	LOC100652836	NA	chr13:52898430-52908484	inter
CUST_3318_PI429285431	4.798951	P	4.8532257	P	0.963078499162118	0	lncRNA	3297-1_{1..982}	"transcript_id ""ENST00000520457.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000520457.1"" | genecode_v17"	chr8	133572745	133573726	-	ENSG00000253521.1	ENST00000520457.1	HPYR1	HPYR1-001	NA	NA	NA	inter
CUST_1556_PI429285431	6.363498	P	6.7897387	P	0.744198454763119	0	lncRNA	1543-1_{1..427}	"transcript_id ""ENST00000449106.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449106.1"" | genecode_v17"	chr3	171594142	171594568	-	ENSG00000234717.1	ENST00000449106.1	TMEM212-AS1	TMEM212-AS1-001	NA	NA	NA	inter
CUST_32258_PI429285431	4.6747355	P	4.63585	P	1.02731990253755	0	lncRNA	33948-1_{1..2363}	n338833|BC041344|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1256|NULL|0.1382130|-0.2775090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338833|BC041344|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1256|NULL|0.1382130|-0.2775090	chr12	  1526669	  1529031	+	NA	NA	NA	NA	ERC1	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70chr12:1516669-1539046"	NA	inner
CUST_6190_PI429285431	2.137184	A	0.91712314	A	2.32956544343655	0	lncRNA	6113-1_{1..576}	"transcript_id ""ENST00000592405.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592405.1"" | genecode_v17"	chr18	 52775542	 52776117	-	ENSG00000267013.1	ENST00000592405.1	CTD-2171N6.1	CTD-2171N6.1-002	NA	NA	NA	inter
CUST_12164_PI429285431	1.1874369	A	0.90892416	A	1.21294382790034	0	lncRNA	13763-1_{1..2380}	lnc-EEA1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EEA1-1:6	chr12	 93524176	 93526555	-	lnc-EEA1-1	lnc-EEA1-1:6	XLOC_010154	linc-EEA1-1	NA	NA	NA	inter
CUST_27571_PI429285431	2.379164	A	0.91778195	A	2.75372033826278	0	lncRNA	29149-1_{1..749}	n324770|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206825|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206825|-0.8418670|-0.2142227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324770|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206825|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206825|-0.8418670|-0.2142227	chr21	 45994969	 45995717	+	NA	NA	NA	NA	TSPEAR	NA	chr21:45984969-46007328	inner
LNCA_21_P0009650	10.844574	P	11.4354315	P	0.663948156417974	0	lncRNA	XR_132655	XR_132655	XR_132655	NA	Hs.292009	LOC100652911	uncharacterized LOC100652911	NA	THC2607475	NA	"PREDICTED: Homo sapiens hypothetical LOC100652911 (LOC100652911), miscRNA [XR_132655]"	chr19:35398868-35398927	hs|19q13.11	Agilent_HUMAN_G3V2	XR_132655	XR_132655	chr19	 35398868	 35398927	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25755_PI429285431	3.0790865	A	3.934303	P	0.552782366395382	0	lncRNA	27281-1_{1..534}	lnc-PLK1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLK1-2:1	chr16	 23723704	 23724237	+	lnc-PLK1-2	lnc-PLK1-2:1	ENSG00000261583.1	CTD-2385L22.1	ERN2	NA	chr16:23713704-23724821	inner
CUST_35830_PI429285431	8.2134075	P	8.443311	P	0.852691925317364	0	lncRNA	37233-1_{1..3000}	n344503|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_51|NULL|-1.2547000|-0.2238021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344503|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_51|NULL|-1.2547000|-0.2238021	chr14	 77425899	 77428898	+	NA	NA	NA	NA	NA	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.10;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-58.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-62.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60"	NA	inter
CUST_40523_PI429285431	1.012783	A	0.92135954	A	1.06542087995138	0	lncRNA	41285-1_{1..1408}	n409587|NR_033969|lncRNA|Homosapiens||RefGeneNoncode|NR_033969||1.3087400|-0.3105676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n409587|NR_033969|lncRNA|Homosapiens||RefGeneNoncode|NR_033969||1.3087400|-0.3105676	chr10	 96039046	 96040453	-	NA	NA	NA	NA	PLCE1	"hg19_refFlat_PLCE1:range=chr10:95848852-960848375'pad=0,hg19_refFlat_PLCE1:range=chr10:95848852-960848375'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_PLCE1:range=chr10:95790804-960848375'pad=0,hg19_refFlat_PLCE1:range=chr10:95790804-960848375'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00chr10:96029046-96056827"	NA	inner
CUST_49387_PI429285431	3.6091814	P	4.663851	P	0.481407458855365	0	lncRNA	53201-1_{1..280}	hg19_lincRNAsTranscripts_TCONS_l2_00023904 range=chr5:135078145-135082167 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023904 range=chr5:135078145-135082167 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	135078145	135078424	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004084	1.082788	A	1.3780193	A	0.814941666452289	0	lncRNA	ENST00000504573	NA	NA	NA	NA	XLOC_004678	NA	ENST00000504573	THC2674979	NA	"BROAD Institute lincRNA (XLOC_004678), lincRNA [TCONS_00009562]"	chr5:179720299-179720358	hs|5q35.3	Agilent_HUMAN_G3V2	ENST00000504573	ENST00000504573	chr5	179720299	179720358	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47613_PI429285431	0.90458494	A	0.9271131	A	0.984505956553879	0	lncRNA	51610-1_{1..3000}	"gi|371877753|ref|NR_028407.2| Homo sapiens armadillo repeat containing, X-linked 4 (ARMCX4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|371877753|ref|NR_028407.2| Homo sapiens armadillo repeat containing, X-linked 4 (ARMCX4), transcript variant 2, non-coding RNA"	NW_004070883.1	    99939	   102938	+	100131755	NR_028407.2	NA	NA	NA	"hg19_refFlat_PPIAL4D:range=chr1:148201967-1482024615'pad=0,hg19_refFlat_PPIAL4D:range=chr1:148201967-1482024615'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_PPIAL4F:range=chr1:148201967-1482024615'pad=0,hg19_refFlat_PPIAL4F:range=chr1:148201967-1482024615'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_PPIAL4D:range=chr1:148806090-1488065845'pad=0,hg19_refFlat_PPIAL4D:range=chr1:148806090-1488065845'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_PPIAL4E:range=chr1:148644086-1486445805'pad=0,hg19_refFlat_PPIAL4E:range=chr1:148644086-1486445805'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_PPIAL4F:range=chr1:148806090-1488065845'pad=0,hg19_refFlat_PPIAL4F:range=chr1:148806090-1488065845'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20"	NA	Unknown
LNCA_33_P3240787	2.476937	A	1.8059671	A	1.59214297916958	0	lncRNA	XR_108893	XR_108893	XR_108893	100131910	Hs.689306	LOC100131910	uncharacterized LOC100131910	NA	NP852585	NA	"PREDICTED: Homo sapiens hypothetical LOC100131910 (LOC100131910), miscRNA [XR_108893]"	chr8:141045713-141045654	hs|8q24.3	Agilent_HUMAN_G3V2	XR_108893	XR_108893	chr8	141045654	141045713	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43717_PI429285431	6.238927	P	6.3333	P	0.936679242860638	0	lncRNA	48464-1_{1..3000}	"gi|223555929|ref|NR_026817.1| Homo sapiens uncharacterized LOC148696 (LOC148696), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223555929|ref|NR_026817.1| Homo sapiens uncharacterized LOC148696 (LOC148696), non-coding RNA"	Chr1	207991724	207994723	+	148696	NR_026817.1	NA	NA	NA	NA	NA	inter
CUST_22557_PI429285431	3.5622246	P	2.7295287	A	1.78101034949463	0	lncRNA	24144-1_{1..444}	lnc-C17orf84-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C17orf84-1:1	chr17	 17092555	 17092998	+	lnc-C17orf84-1	lnc-C17orf84-1:1	ENSG00000263789.1	RP11-45M22.6	MPRIP	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70chr17:17082555-17095962"	NA	inner
CUST_16635_PI429285431	2.634344	A	3.1274393	A	0.7104990866547	0	lncRNA	18337-1_{1..311}	lnc-RFTN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RFTN1-1:1	chr3	 16580866	 16581176	-	lnc-RFTN1-1	lnc-RFTN1-1:1	XLOC_003062	linc-RFTN1	NA	NA	NA	inter
LNCA_21_P0012597	0.900562	A	0.91971505	A	0.986811853236792	0	lncRNA	TCONS_l2_00020594	NA	NA	NA	NA	XLOC_l2_010724	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010724), lincRNA [TCONS_l2_00020594]"	chr4:80007396-80031204	hs|4q21.21	Agilent_HUMAN_G3V2	TCONS_l2_00020594	TCONS_l2_00020594	chr4	 80007396	 80031204	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10679_PI429285431	5.453524	P	5.653934	P	0.870303196383355	0	lncRNA	12212-1_{1..503}	lnc-CAPRIN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CAPRIN2-1:1	chr12	 30975916	 30976418	-	lnc-CAPRIN2-1	lnc-CAPRIN2-1:1	XLOC_010040	linc-CAPRIN2	NA	NA	NA	inter
LNCA_21_P0002446	8.071668	P	8.133876	P	0.957797118238292	0	lncRNA	TCONS_00004269	NA	NA	NA	NA	XLOC_002111	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002111), lincRNA [TCONS_00004269]"	chr2:61368001-61367942	hs|2p15	Agilent_HUMAN_G3V2	TCONS_00004269	TCONS_00004269	chr2	 61367942	 61368001	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012632	0.898036	A	0.91587526	A	0.987710902584914	0	lncRNA	TCONS_l2_00020874	NA	NA	NA	NA	XLOC_l2_010936	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010936), lincRNA [TCONS_l2_00020874]"	chr4:171915843-171915902	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_l2_00020874	TCONS_l2_00020874	chr4	171915843	171915902	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17109_PI429285431	1.2675791	A	0.90177083	A	1.288603367443	0	lncRNA	18819-1_{1..950}	lnc-GNLY-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNLY-1:1	chr2	 85942301	 85943250	+	lnc-GNLY-1	lnc-GNLY-1:1	XLOC_001556	linc-ATOH8	NA	NA	NA	inter
CUST_21837_PI429285431	8.56534	P	8.584505	P	0.986803679400692	0	lncRNA	23447-1_{1..731}	lnc-PRDM4-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRDM4-3:2	chr12	108257503	108258233	-	lnc-PRDM4-3	lnc-PRDM4-3:2	ENSG00000257398.1	RP11-554D14.6	NA	NA	NA	inter
CUST_4354_PI429285431	0.8850726	A	0.8975088	A	0.991416929716046	0	lncRNA	4309-1_{1..1258}	"transcript_id ""ENST00000547033.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547033.1"" | genecode_v17"	chr12	 86352465	 86353722	+	ENSG00000258178.1	ENST00000547033.1	RP11-18J9.3	RP11-18J9.3-001	NA	NA	NA	inter
CUST_14489_PI429285431	9.763472	P	9.548445	P	1.16072563713043	0	lncRNA	16155-1_{1..1636}	lnc-DNAH17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAH17-1:1	chr17	 76614403	 76616038	-	lnc-DNAH17-1	lnc-DNAH17-1:1	XLOC_012582	linc-DNAH17	NA	NA	NA	inter
LNCA_21_P0011750	0.89279145	A	0.90853506	A	0.989146687960118	0	lncRNA	TCONS_l2_00013124	NA	NA	NA	NA	XLOC_l2_007060	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007060), lincRNA [TCONS_l2_00013124]"	chr19:43788310-43788251	hs|19q13.31	Agilent_HUMAN_G3V2	TCONS_l2_00013124	TCONS_l2_00013124	chr19	 43788251	 43788310	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014486	0.8921912	A	0.9077157	A	0.989296926495374	0	lncRNA	XR_110046	XR_110046	XR_110046	NA	Hs.536687	LOC100505947	uncharacterized LOC100505947	NA	THC2631442	NA	"PREDICTED: Homo sapiens hypothetical LOC100505947 (LOC100505947), miscRNA [XR_110046]"	chr3:25426238-25426179	hs|3p24.2	Agilent_HUMAN_G3V2	XR_110046	XR_110046	chr3	 25426179	 25426238	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33013_PI429285431	2.114797	A	1.2680019	A	1.79850117248468	0	lncRNA	34628-1_{1..590}	n339695|AF085992|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2140|NULL|1.4816400|-0.3016567	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339695|AF085992|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2140|NULL|1.4816400|-0.3016567	chr3	172413335	172413924	-	NA	NA	NA	NA	NCEH1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90chr3:172403335-172423925"	NA	inner
CUST_32965_PI429285431	0.90154654	A	0.90146685	A	1.0000552384244	0	lncRNA	34582-1_{1..446}	n339640|AK027233|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2084|NULL|2.5050000|-0.2153410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339640|AK027233|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2084|NULL|2.5050000|-0.2153410	chr3	149485482	149485927	-	NA	NA	NA	NA	ANKUB1	NA	chr3:149478887-149495882	inner
LNCA_21_P0004239	0.88670653	A	0.8996288	A	0.991082959720713	0	lncRNA	AK098570	NA	AK098570	NA	Hs.171348	XLOC_004325	NA	NA	THC2524131	NA	"BROAD Institute lincRNA (XLOC_004325), lincRNA [TCONS_00009914]"	chr5:29165109-29169681	hs|5p13.3	Agilent_HUMAN_G3V2	AK098570	AK098570	chr5	 29165109	 29169681	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9353_PI429285431	1.9641054	A	0.913125	A	2.07193737824081	0	lncRNA	10857-1_{1..462}	lnc-ZNF672-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF672-1:1	chr1	249158776	249159237	+	lnc-ZNF672-1	lnc-ZNF672-1:1	XLOC_000653	linc-PGBD2	ZNF692	NA	chr1:249148776-249153315	inter
CUST_2466_PI429285431	0.9051408	A	0.9051408	A	1	0	lncRNA	2458-1_{1..1506}	"transcript_id ""ENST00000435043.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000435043.1"" | genecode_v17"	chr6	  3182978	  3184483	-	ENSG00000230269.1	ENST00000435043.1	RP1-40E16.9	RP1-40E16.9-001	NA	NA	NA	inter
LNCA_21_P0008402	6.517673	P	6.5049253	P	1.00887518528115	0	lncRNA	TCONS_00022650	NA	NA	NA	NA	XLOC_010952	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010952), lincRNA [TCONS_00022650]"	chr14:105562193-105562252	hs|14q32.33	Agilent_HUMAN_G3V2	TCONS_00022650	TCONS_00022650	chr14	105562193	105562252	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20929_PI429285431	7.908891	P	7.7123055	P	1.14598288664783	0	lncRNA	22560-1_{1..643}	lnc-SRCIN1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRCIN1-1:10	chr17	 36607870	 36608512	-	lnc-SRCIN1-1	lnc-SRCIN1-1:10	ENSG00000260833.2	AC124789.1	ARHGAP23	NA	chr17:36597870-36618147	inner
CUST_35755_PI429285431	2.671399	A	2.7400956	A	0.953499045868887	0	lncRNA	37175-1_{1..658}	n342934|AF086196|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5443|NULL|-1.1347800|-0.2983513	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342934|AF086196|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5443|NULL|-1.1347800|-0.2983513	chrX	 46464683	 46465340	+	NA	NA	NA	NA	SLC9A7	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80chrX:46466373-46475404"	NA	inner
CUST_31968_PI429285431	1.6409926	A	2.1069674	A	0.723981732091923	0	lncRNA	33691-1_{1..822}	n338525|BC007817|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|923|NULL|1.0518700|-0.1407462	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n338525|BC007817|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|923|NULL|1.0518700|-0.1407462	chr19	 36158849	 36159670	-	NA	NA	NA	NA	COX6B1	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_UPK1A:range=chr19:36157715-361689215'pad=0,hg19_refFlat_UPK1A:range=chr19:36157715-361689215'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.40;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr19:36148849-36149686"	NA	inter
LNCA_21_P0007127	7.0678415	P	6.956848	P	1.07997169405624	0	lncRNA	AK091141	NA	AK091141	NA	Hs.638531	XLOC_009192	NA	NA	THC2617754	NA	"BROAD Institute lincRNA (XLOC_009192), lincRNA [TCONS_00019101]"	chr11:69231518-69231577	hs|11q13.3	Agilent_HUMAN_G3V2	AK091141	AK091141	chr11	 69231518	 69231577	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007503	3.0578625	P	0.9495443	A	4.31188350188316	0	lncRNA	TCONS_00020237	NA	NA	NA	NA	XLOC_009900	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009900), lincRNA [TCONS_00020237]"	chr12:117150423-117150482	hs|12q24.22	Agilent_HUMAN_G3V2	TCONS_00020237	TCONS_00020237	chr12	117150423	117150482	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3668_PI429285431	0.8773394	A	0.8817111	A	0.9969743549884	0	lncRNA	3636-1_{1..500}	"transcript_id ""ENST00000431395.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431395.1"" | genecode_v17"	chr10	 43474465	 43474964	-	ENSG00000229630.1	ENST00000431395.1	RP11-124O11.2	RP11-124O11.2-001	NA	NA	NA	inter
CUST_25431_PI429285431	3.4953752	P	3.740522	P	0.843729938860581	0	lncRNA	26961-1_{1..1988}	lnc-FAM75A5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM75A5-2:1	chr9	 41321819	 41323806	+	lnc-FAM75A5-2	lnc-FAM75A5-2:1	ENSG00000231391.1	RP11-95K23.3	FAM75A4	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_SPATA31A5:range=chr9:65503516-655095815'pad=0,hg19_refFlat_SPATA31A5:range=chr9:65503516-655095815'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_SPATA31A7:range=chr9:65503516-655095815'pad=0,hg19_refFlat_SPATA31A7:range=chr9:65503516-655095815'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SPATA31A2:range=chr9:39355728-393618065'pad=0,hg19_refFlat_SPATA31A2:range=chr9:39355728-393618065'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_SPATA31A7:range=chr9:41500708-415067725'pad=0,hg19_refFlat_SPATA31A7:range=chr9:41500708-415067725'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_SPATA31C2:range=chr9:90744547-907498715'pad=0,hg19_refFlat_SPATA31C2:range=chr9:90744547-907498715'pad=0 3'pad=0 strand=- repeatMasking=none,-93.80;hg19_refFlat_SPATA31A4:range=chr9:41321260-413273775'pad=0,hg19_refFlat_SPATA31A4:range=chr9:41321260-413273775'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00;hg19_refFlat_SPATA31A6:range=chr9:43624655-436307015'pad=0,hg19_refFlat_SPATA31A6:range=chr9:43624655-436307015'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00;hg19_refFlat_SPATA31A5:range=chr9:41500708-415067725'pad=0,hg19_refFlat_SPATA31A5:range=chr9:41500708-415067725'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_SPATA31C1:range=chr9:90532906-905383895'pad=0,hg19_refFlat_SPATA31C1:range=chr9:90532906-905383895'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SPATA31A2:range=chr9:39885004-398910575'pad=0,hg19_refFlat_SPATA31A2:range=chr9:39885004-398910575'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_SPATA31A1:range=chr9:39355728-393618065'pad=0,hg19_refFlat_SPATA31A1:range=chr9:39355728-393618065'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SPATA31A7:range=chr9:41321260-413273355'pad=0,hg19_refFlat_SPATA31A7:range=chr9:41321260-413273355'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00;hg19_refFlat_SPATA31A5:range=chr9:41321260-413273355'pad=0,hg19_refFlat_SPATA31A5:range=chr9:41321260-413273355'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00;hg19_refFlat_SPATA31A1:range=chr9:39885004-398910575'pad=0,hg19_refFlat_SPATA31A1:range=chr9:39885004-398910575'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SPATA31A3:range=chr9:40700320-407063875'pad=0,hg19_refFlat_SPATA31A3:range=chr9:40700320-407063875'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00chr9:41321107-41327397"	NA	inner
LNCA_21_P0008769	3.5916119	P	3.3653078	P	1.16983422280934	0	lncRNA	AL357200	NA	AL357200	NA	Hs.513112	XLOC_011563	NA	NA	THC2707951	NA	"BROAD Institute lincRNA (XLOC_011563), lincRNA [TCONS_00023766]"	chr15:86299154-86299095	hs|15q25.3	Agilent_HUMAN_G3V2	AL357200	AL357200	chr15	 86299095	 86299154	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12944_PI429285431	0.8862313	A	0.88117176	A	1.00351316262621	0	lncRNA	14572-1_{1..821}	lnc-HDDC2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HDDC2-2:3	chr6	125695285	125696105	-	lnc-HDDC2-2	lnc-HDDC2-2:3	XLOC_005827	linc-HDDC2-4	NA	NA	NA	inter
CUST_40181_PI429285431	5.2277703	P	4.9983845	P	1.17233574330936	0	lncRNA	41015-1_{1..1597}	n407954|NR_027663|lncRNA|Homosapiens||RefGeneNoncode|NR_027663||3.8452900|-0.2018776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407954|NR_027663|lncRNA|Homosapiens||RefGeneNoncode|NR_027663||3.8452900|-0.2018776	chr2	233470766	233472362	+	NA	NA	NA	NA	EFHD1	NA	chr2:233470767-233547491	inner
CUST_47638_PI429285431	0.88966453	A	0.9021275	A	0.991398533600288	0	lncRNA	51627-1_{1..3000}	"gi|258547132|ref|NR_028443.1| Homo sapiens SLC25A5 antisense RNA 1 (SLC25A5-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|258547132|ref|NR_028443.1| Homo sapiens SLC25A5 antisense RNA 1 (SLC25A5-AS1), non-coding RNA"	ChrX	118599996	118602995	-	100303728	NR_028443.1	NA	NA	NA	"hg19_refFlat_SLC25A6:range=chrY:1455495-14609025'pad=0,hg19_refFlat_SLC25A6:range=chrY:1455495-14609025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC25A5:range=chrX:118602479-1186050215'pad=0,hg19_refFlat_SLC25A5:range=chrX:118602479-1186050215'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.80;hg19_refFlat_SLC25A31:range=chr4:128651701-1286947295'pad=0,hg19_refFlat_SLC25A31:range=chr4:128651701-1286947295'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_SLC25A6:range=chrX:1505495-15109025'pad=0,hg19_refFlat_SLC25A6:range=chrX:1505495-15109025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC25A4:range=chr4:186064527-1860681255'pad=0,hg19_refFlat_SLC25A4:range=chr4:186064527-1860681255'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10"	NA	inter
CUST_39287_PI429285431	0.8757197	A	3.1947572	A	0.20040112325189	0	lncRNA	40258-1_{1..1671}	n386266|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fuc.1||-1.2539500|-0.3429260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386266|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fuc.1||-1.2539500|-0.3429260	chr2	206481245	206482915	+	NA	NA	NA	NA	PARD3B	NA	chr2:206471245-206484886	inner
CUST_20013_PI429285431	3.8022878	P	3.7613645	P	1.02877201240446	0	lncRNA	21666-1_{1..420}	lnc-RWDD3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RWDD3-3:1	chr1	 95603831	 95604250	+	lnc-RWDD3-3	lnc-RWDD3-3:1	ENSG00000231992.1	RP11-57H12.2	TMEM56-RWDD3	NA	chr1:95593831-95614110	inner
CUST_7481_PI429285431	0.88689435	A	0.89872676	A	0.991831939743624	0	lncRNA	9122-1_{1..3000}	lnc-RHOV-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RHOV-1:1	chr15	 41320640	 41323639	-	lnc-RHOV-1	lnc-RHOV-1:1	ENSG00000251290	ENST00000511636	INO80	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10chr15:41310640-41332414"	NA	inner
CUST_38039_PI429285431	0.8983356	A	0.8939098	A	1.00307244109324	0	lncRNA	39121-1_{1..593}	n377613|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029993||-1.1986100|-0.3039310	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377613|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029993||-1.1986100|-0.3039310	chr6	  2437380	  2437972	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003617	0.8763544	A	0.877565	A	0.999161227989284	0	lncRNA	TCONS_00008094	NA	NA	NA	NA	XLOC_003557	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003557), lincRNA [TCONS_00008094]"	chr4:64651521-64651580	hs|4q13.1	Agilent_HUMAN_G3V2	TCONS_00008094	TCONS_00008094	chr4	 64651521	 64651580	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47119_PI429285431	1.7188483	A	0.9796957	A	1.66919511085074	0	lncRNA	51201-1_{1..2465}	"gi|333470713|ref|NR_038250.1| Homo sapiens uncharacterized LOC100507433 (LOC100507433), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|333470713|ref|NR_038250.1| Homo sapiens uncharacterized LOC100507433 (LOC100507433), transcript variant 4, non-coding RNA"	Chr19	 38042273	 38044737	+	100507433	NR_038250.1	NA	NA	NA	NA	NA	inter
CUST_29759_PI429285431	6.2440042	P	5.9568996	P	1.22018897466448	0	lncRNA	31521-1_{1..633}	n333444|BC018429|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000089607|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000089607|1.7829900|-0.1895770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333444|BC018429|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000089607|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000089607|1.7829900|-0.1895770	chr7	 91756856	 91757488	-	NA	NA	NA	NA	CYP51A1	NA	chr7:91746856-91764059	inner
LNCA_21_P0006784	4.2424846	P	4.3430448	P	0.932670764177179	0	lncRNA	ENST00000427379	XR_110441	XR_110441	NA	NA	XLOC_008917	NA	ENST00000427379	THC2667788	NA	"PREDICTED: Homo sapiens hypothetical LOC100505561 (LOC100505561), miscRNA [XR_110441]"	chr10:99588294-99588235	hs|10q24.2	Agilent_HUMAN_G3V2	ENST00000427379	ENST00000427379	chr10	 99588235	 99588294	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014902	3.616424	P	3.7794268	P	0.893164118887344	0	lncRNA	XR_132899	XR_132899	XR_132899	NA	NA	LOC100653017	uncharacterized LOC100653017	NA	THC2576171	NA	"PREDICTED: Homo sapiens hypothetical LOC100653017 (LOC100653017), miscRNA [XR_132899]"	chr11:65193472-65193413	hs|11q13.1	Agilent_HUMAN_G3V2	XR_132899	XR_132899	chr11	 65193413	 65193472	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7703_PI429285431	8.577484	P	7.554616	P	2.0319543629482	0	lncRNA	9336-1_{1..1038}	lnc-WDR74-1:20	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR74-1:20	chr11	 62622896	 62623933	-	lnc-WDR74-1	lnc-WDR74-1:20	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62632932	inter
CUST_12328_PI429285431	0.88493246	A	0.89391285	A	0.993794601499359	0	lncRNA	13940-2_{3001..4195}	lnc-EPSTI1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPSTI1-3:1	chr13	 43324328	 43325522	-	lnc-EPSTI1-3	lnc-EPSTI1-3:1	XLOC_010582	linc-KIAA0564-3	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60"	NA	inter
CUST_17133_PI429285431	7.6832924	P	7.2930756	P	1.31059033711795	0	lncRNA	18842-1_{1..1224}	lnc-NPHP1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NPHP1-1:4	chr2	110976785	110978008	-	lnc-NPHP1-1	lnc-NPHP1-1:4	XLOC_002263	linc-NPHP1-3	NA	NA	NA	inter
CUST_12119_PI429285431	0.9004688	A	1.102946	A	0.869057054685381	0	lncRNA	13715-1_{1..946}	lnc-ZPBP-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZPBP-3:1	chr7	 50296444	 50297389	-	lnc-ZPBP-3	lnc-ZPBP-3:1	XLOC_006439	linc-ZPBP-1	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-96.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40"	NA	inter
CUST_20407_PI429285431	6.257181	P	6.5927157	P	0.792490364800519	0	lncRNA	22049-1_{1..380}	lnc-PRDM13-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRDM13-4:1	chr6	100885132	100885511	+	lnc-PRDM13-4	lnc-PRDM13-4:1	ENSG00000228082.1	RP1-121G13.2	SIM1	NA	chr6:100875132-100895360	inner
LNCA_33_P3346618	0.87929225	A	0.8839856	A	0.996752103544209	0	lncRNA	XR_112948	XR_112948	XR_112948	   441179	Hs.192711	LOC441179	uncharacterized LOC441179	NA	THC2480473	NA	"PREDICTED: Homo sapiens hypothetical LOC441179 (LOC441179), miscRNA [XR_112948]"	chr6:168198857-168198916	hs|6q27	Agilent_HUMAN_G3V2	XR_112948	XR_112948	chr6	168198857	168198916	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006766	3.67326	P	3.9702005	P	0.813976754616892	0	lncRNA	ENST00000433019	NA	NA	NA	NA	XLOC_008835	NA	ENST00000433019	NA	NA	"BROAD Institute lincRNA (XLOC_008835), lincRNA [TCONS_00018940]"	chr10:64884545-64884486	hs|10q21.3	Agilent_HUMAN_G3V2	ENST00000433019	ENST00000433019	chr10	 64884486	 64884545	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15452_PI429285431	0.9032575	A	1.512031	A	0.655753950978142	0	lncRNA	17140-1_{1..442}	lnc-GDAP2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GDAP2-1:6	chr1	118148179	118148620	-	lnc-GDAP2-1	lnc-GDAP2-1:6	XLOC_000980	linc-VTCN1-2	FAM46C	NA	chr1:118148604-118158307	inter
CUST_24879_PI429285431	1.444305	A	1.3871272	A	1.04042848265937	0	lncRNA	26420-1_{1..720}	lnc-CHSY1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHSY1-3:1	chr15	101625904	101626623	-	lnc-CHSY1-3	lnc-CHSY1-3:1	ENSG00000259755.1	RP11-505E24.2	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LRRK1:range=chr15:101464838-1016090535'pad=0,hg19_refFlat_LRRK1:range=chr15:101464838-1016090535'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-16.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.74;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20"	NA	inter
CUST_16875_PI429285431	0.8901864	A	0.88990664	A	1.00019393365793	0	lncRNA	18582-1_{1..419}	lnc-APOC3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APOC3-2:1	chr11	116644626	116645044	+	lnc-APOC3-2	lnc-APOC3-2:1	XLOC_009286	linc-APOC3-1	ZNF259	NA	chr11:116649276-116654921	inter
CUST_705_PI429285431	0.9065733	A	0.9151901	A	0.994045090552598	0	lncRNA	698-1_{1..815}	"transcript_id ""ENST00000591093.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591093.1"" | genecode_v17"	chr2	  6775364	  6776178	-	ENSG00000236172.2	ENST00000591093.1	AC097517.2	AC097517.2-014	NA	NA	NA	inter
CUST_20111_PI429285431	0.87704045	A	0.88054085	A	0.997576648677439	0	lncRNA	21759-1_{1..1704}	lnc-SH3TC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SH3TC2-1:1	chr5	148024250	148025953	-	lnc-SH3TC2-1	lnc-SH3TC2-1:1	ENSG00000253297.1	HTR4-IT1	HTR4	NA	chr5:148014250-148033739	inner
CUST_27020_PI429285431	8.447788	P	8.198896	P	1.18829414615164	0	lncRNA	28550-1_{1..721}	n324125|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001150|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001150|-1.0773200|-0.2384755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324125|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001150|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001150|-1.0773200|-0.2384755	chr9	 34716542	 34717262	-	NA	NA	NA	NA	C9orf144B	"hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80chr9:34723050-34729451"	NA	inter
CUST_45309_PI429285431	2.5077937	A	1.7861506	A	1.64905909554315	0	lncRNA	49751-1_{1..1939}	"gi|383792208|ref|NR_047543.1| Homo sapiens CDKN2B antisense RNA 1 (CDKN2B-AS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|383792208|ref|NR_047543.1| Homo sapiens CDKN2B antisense RNA 1 (CDKN2B-AS1), transcript variant 3, non-coding RNA"	Chr9	 21994790	 21996728	+	100048912	NR_047543.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10"	NA	inter
CUST_11797_PI429285431	8.411718	P	8.436194	P	0.983177632787657	0	lncRNA	13378-1_{1..325}	lnc-NRXN1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NRXN1-2:1	chr2	 51571329	 51571653	-	lnc-NRXN1-2	lnc-NRXN1-2:1	XLOC_002094	linc-NRXN1-5	NA	NA	NA	inter
CUST_34383_PI429285431	2.7120361	A	1.199967	A	2.85218804119623	0	lncRNA	35868-2_{3001..3944}	n341251|AK130384|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3719|NULL|-0.9595150|-0.3041400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341251|AK130384|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3719|NULL|-0.9595150|-0.3041400	chr7	 55283604	 55284547	+	NA	NA	NA	NA	EGFR	NA	chr7:55270604-55275031	inter
CUST_297_PI429201921	7.694968	P	7.6965685	P	0.9988912330743	0	lncRNA	206-2_{3001..6000}	TC09001922.hg.1	TCONS_l2_00029716-XLOC_l2_014779 // Broad TUCP // linc-FAM75A7-1 chr9:+:40715523-40722679 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:+:40715523-40722679	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00029716-XLOC_l2_014779	linc-FAM75A7-1	chr9	 40715523	 40722679	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47170_PI429285431	1.4089992	A	3.8136191	A	0.188858824377332	0	lncRNA	51247-1_{1..2941}	"gi|368711266|ref|NR_045763.1| Homo sapiens kallikrein-related peptidase 2 (KLK2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|368711266|ref|NR_045763.1| Homo sapiens kallikrein-related peptidase 2 (KLK2), transcript variant 5, non-coding RNA"	Chr19	 51376689	 51379629	+	3817	NR_045763.1	NA	NA	NA	NA	NA	inter
CUST_23981_PI429285431	0.8900107	A	0.9027819	A	0.991186745162389	0	lncRNA	25536-1_{1..477}	lnc-BRMS1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BRMS1L-1:1	chr14	 36532890	 36533366	+	lnc-BRMS1L-1	lnc-BRMS1L-1:1	ENSG00000258342.1	RP11-116N8.1	NA	NA	NA	inter
CUST_21161_PI429285431	0.9015816	A	1.3116806	A	0.752571729279333	0	lncRNA	22784-1_{1..448}	lnc-FRMD6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FRMD6-1:1	chr14	 52229756	 52230203	+	lnc-FRMD6-1	lnc-FRMD6-1:1	ENSG00000259111.1	RP11-280K24.1	NA	NA	NA	inter
CUST_36752_PI429285431	0.90591985	A	0.9097866	A	0.997323361740777	0	lncRNA	37925-1_{1..2062}	n345232|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_781|NULL|-1.4337700|-0.4180463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345232|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_781|NULL|-1.4337700|-0.4180463	chr13	 92003657	 92005718	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19244_PI429285431	6.5002675	P	5.771493	P	1.65723075579265	0	lncRNA	20913-1_{1..530}	lnc-AGRP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGRP-2:1	chr16	 67573948	 67574477	-	lnc-AGRP-2	lnc-AGRP-2:1	ENSG00000261396.1	CTD-2012K14.2	FAM65A	"hg19_refFlat_FAM65A:range=chr16:67563726-675803665'pad=0,hg19_refFlat_FAM65A:range=chr16:67563726-675803665'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.90;hg19_refFlat_FAM65A:range=chr16:67571482-675803665'pad=0,hg19_refFlat_FAM65A:range=chr16:67571482-675803665'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.90;hg19_refFlat_FAM65A:range=chr16:67572350-675803665'pad=0,hg19_refFlat_FAM65A:range=chr16:67572350-675803665'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.90chr16:67563948-67580691"	NA	inner
LNCA_21_P0011703	3.335178	P	2.6344304	A	1.62534682410008	0	lncRNA	TCONS_l2_00012636	NA	NA	NA	NA	XLOC_l2_006789	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006789), lincRNA [TCONS_l2_00012636]"	chr19:51694125-51694184	hs|19q13.41	Agilent_HUMAN_G3V2	TCONS_l2_00012636	TCONS_l2_00012636	chr19	 51694125	 51694184	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008534	0.9032127	A	0.9242602	A	0.985516888763194	0	lncRNA	TCONS_00023107	NA	NA	NA	NA	XLOC_011025	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011025), lincRNA [TCONS_00023107]"	chr14:52884530-52884471	hs|14q22.1	Agilent_HUMAN_G3V2	TCONS_00023107	TCONS_00023107	chr14	 52884471	 52884530	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30650_PI429285431	2.5463367	A	1.6810898	A	1.82165139435616	0	lncRNA	32432-1_{1..417}	n336029|X81754|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323883|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323883|3.2361100|-0.0958089	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336029|X81754|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323883|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323883|3.2361100|-0.0958089	chr14	106329408	106329824	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13052_PI429285431	7.3477955	P	7.444578	P	0.935116164781581	0	lncRNA	14677-1_{1..1060}	lnc-ABCD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABCD4-1:1	chr14	 74684283	 74685342	-	lnc-ABCD4-1	lnc-ABCD4-1:1	XLOC_011074	linc-ALDH6A1	NA	NA	NA	inter
CUST_46781_PI429285431	0.91241014	A	0.92807645	A	0.989199688133578	0	lncRNA	50928-1_{1..1206}	"gi|387848999|ref|NR_048576.1| Homo sapiens EPN2 antisense RNA 1 (EPN2-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|387848999|ref|NR_048576.1| Homo sapiens EPN2 antisense RNA 1 (EPN2-AS1), non-coding RNA"	Chr17	 19199909	 19201114	-	100874018	NR_048576.1	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50"	NA	inter
LNCA_21_P0008528	4.4211783	P	3.9425402	P	1.39342765356496	0	lncRNA	TCONS_00023071	NA	NA	NA	NA	XLOC_010971	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010971), lincRNA [TCONS_00023071]"	chr14:24195242-24195183	hs|14q11.2	Agilent_HUMAN_G3V2	TCONS_00023071	TCONS_00023071	chr14	 24195183	 24195242	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001882	0.89310014	A	0.9089488	A	0.989074665756108	0	lncRNA	ENST00000438443	NA	NA	NA	NA	XLOC_001541	NA	ENST00000438443	NA	NA	"BROAD Institute lincRNA (XLOC_001541), lincRNA [TCONS_00002940]"	chr2:77900659-77900718	hs|2p12	Agilent_HUMAN_G3V2	ENST00000438443	ENST00000438443	chr2	 77900659	 77900718	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2051_PI429285431	1.3149322	A	1.1071935	A	1.15487659510223	0	lncRNA	2043-1_{1..801}	"transcript_id ""ENST00000503757.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503757.1"" | genecode_v17"	chr5	  4773594	  4774394	+	ENSG00000249521.1	ENST00000503757.1	CTD-2161F6.3	CTD-2161F6.3-001	NA	NA	NA	inter
LNCA_21_P0011359	5.144357	P	4.871149	P	1.20849206470691	0	lncRNA	TCONS_l2_00008964	NA	NA	NA	NA	XLOC_l2_004854	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004854), lincRNA [TCONS_l2_00008964]"	chr15:28964938-28964879	hs|15q13.1	Agilent_HUMAN_G3V2	TCONS_l2_00008964	TCONS_l2_00008964	chr15	 28964879	 28964938	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28358_PI429285431	0.88627064	A	0.8996059	A	0.990799290087991	0	lncRNA	30007-1_{1..344}	n325667|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045418|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045418|-1.0731600|-0.1890557	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325667|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045418|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045418|-1.0731600|-0.1890557	chr13	 87251291	 87251634	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8437_PI429285431	2.1151636	A	0.91345936	A	2.30011220337878	0	lncRNA	10007-1_{1..260}	lnc-RTN4IP1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RTN4IP1-2:6	chr6	107220113	107220372	-	lnc-RTN4IP1-2	lnc-RTN4IP1-2:6	ENSG00000235142	RP1-60O19.1	NA	NA	NA	inter
CUST_9507_PI429285431	4.4472494	P	4.5132236	P	0.955300020048381	0	lncRNA	11017-1_{1..3000}	lnc-TMEM132D-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132D-3:3	chr12	130646507	130649506	-	lnc-TMEM132D-3	lnc-TMEM132D-3:3	XLOC_010263	linc-TMEM132D-1	FZD10	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90chr12:130647004-130650285"	NA	inter
CUST_36904_PI429285431	3.0289075	A	4.2870035	P	0.418095378074656	0	lncRNA	38064-1_{1..358}	n345377|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_926|NULL|-1.5646300|-0.2690117	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345377|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_926|NULL|-1.5646300|-0.2690117	chr19	 31851202	 31851559	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47102_PI429285431	0.8793649	A	0.8842947	A	0.996588754592596	0	lncRNA	51183-1_{1..2067}	"gi|310123860|ref|XR_109482.1| PREDICTED: Homo sapiens uncharacterized protein FLJ21369 (FLJ21369), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123860|ref|XR_109482.1| PREDICTED: Homo sapiens uncharacterized protein FLJ21369 (FLJ21369), misc_RNA"	NA	NA	NA	NA	NA	XR_109482.1	NA	NA	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.71;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20"	NA	Unknown
CUST_34061_PI429285431	1.0128392	A	0.88303053	A	1.09414858581697	0	lncRNA	35591-1_{1..1191}	n340881|BC029534|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3346|NULL|-1.1786700|-0.2989715	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340881|BC029534|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3346|NULL|-1.1786700|-0.2989715	chr6	 25245138	 25246328	-	NA	NA	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_RPL21:range=chr13:27827914-278306625'pad=0,hg19_refFlat_RPL21:range=chr13:27827914-278306625'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90"	NA	inter
CUST_32069_PI429285431	4.2107296	P	4.398032	P	0.878246361737548	0	lncRNA	33778-1_{1..3000}	n338629|BX647147|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1041|NULL|-0.1171300|-0.3858170	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n338629|BX647147|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1041|NULL|-0.1171300|-0.3858170	chr13	 30776774	 30779773	-	NA	NA	NA	NA	KATNAL1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr13:30776767-30791018"	NA	inner
CUST_4144_PI429285431	1.1253276	A	0.8814565	A	1.18416580585365	0	lncRNA	4103-1_{1..324}	"transcript_id ""ENST00000540237.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000540237.1"" | genecode_v17"	chr12	  5343840	  5344163	-	ENSG00000256115.1	ENST00000540237.1	RP11-319E16.1	RP11-319E16.1-003	LOC100507271	NA	chr12:5343813-5347432	inter
CUST_16771_PI429285431	1.0972819	A	2.1652443	A	0.476992206641983	0	lncRNA	18479-1_{1..208}	lnc-C10orf129-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf129-1:1	chr10	 97051893	 97052100	+	lnc-C10orf129-1	lnc-C10orf129-1:1	XLOC_008568	linc-ENTPD1-3	PDLIM1	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr10:97041893-97050781"	NA	inter
CUST_26791_PI429285431	0.8787135	A	1.233305	A	0.782091061351227	0	lncRNA	28297-1_{1..451}	n323851|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057213|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057213|-1.3603000|-0.5031947	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323851|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057213|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057213|-1.3603000|-0.5031947	chrX	 71943983	 71944433	-	NA	NA	NA	NA	PHKA1	NA	chrX:71933983-71934029	inter
LNCA_21_P0003342	8.229127	P	8.440778	P	0.863548432899548	0	lncRNA	ENST00000506514	NA	NA	NA	NA	XLOC_003474	NA	ENST00000506514	THC2712965	NA	"BROAD Institute lincRNA (XLOC_003474), lincRNA [TCONS_00007493]"	chr4:23784121-23784180	hs|4p15.2	Agilent_HUMAN_G3V2	ENST00000506514	ENST00000506514	chr4	 23784121	 23784180	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4603_PI429285431	6.8589826	P	6.909692	P	0.965461476812324	0	lncRNA	4552-1_{1..248}	"transcript_id ""ENST00000434273.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434273.1"" | genecode_v17"	chr13	 44032601	 44032848	+	ENSG00000238189.1	ENST00000434273.1	ENOX1-AS2	ENOX1-AS2-001	ENOX1	NA	chr13:44022601-44043259	inner
LNCA_33_P3233886	1.5361642	A	2.0083551	A	0.720869042731996	0	lncRNA	XR_132638	XR_132638	XR_132638	100505873	NA	LOC100505873	putative apoptosis-related protein 2-like	NA	THC2749934	NA	"PREDICTED: Homo sapiens putative apoptosis-related protein 2-like (LOC100505873), miscRNA [XR_132638]"	chr17:41286840-41286899	hs|17q21.31	Agilent_HUMAN_G3V2	XR_132638	XR_132638	chr17	 41286840	 41286899	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12544_PI429285431	0.87453985	A	0.8766936	A	0.998508248029623	0	lncRNA	14155-1_{1..433}	lnc-KLHL32-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL32-4:2	chr6	 98446735	 98447167	+	lnc-KLHL32-4	lnc-KLHL32-4:2	XLOC_005397	linc-POU3F2-3	NA	NA	NA	inter
CUST_8517_PI429285431	1.0324956	A	1.7993287	A	0.587706149806367	0	lncRNA	10079-1_{1..2664}	lnc-UBLCP1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-UBLCP1-5:3	chr5	158542120	158544783	+	lnc-UBLCP1-5	lnc-UBLCP1-5:3	ENSG00000245812	RP11-175K6.1	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10"	NA	inter
CUST_10584_PI429285431	11.727878	P	12.154865	P	0.743813583626804	0	lncRNA	12114-1_{1..726}	lnc-EFNA5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFNA5-2:1	chr5	106346641	106347366	-	lnc-EFNA5-2	lnc-EFNA5-2:1	XLOC_004951	linc-NUDT12-2	NA	NA	NA	inter
CUST_32597_PI429285431	1.9171358	A	1.1869947	A	1.65880131955245	0	lncRNA	34258-1_{1..2695}	n339218|BC035113|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1650|NULL|0.4128770|-0.2367852	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339218|BC035113|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1650|NULL|0.4128770|-0.2367852	chr16	 56126898	 56129592	-	NA	NA	NA	NA	GNAO1	NA	chr16:56225251-56235006	inter
CUST_13004_PI429285431	1.0726628	A	0.87665725	A	1.14552230475762	0	lncRNA	14631-1_{1..303}	lnc-SORCS1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SORCS1-5:1	chr10	110226053	110226355	-	lnc-SORCS1-5	lnc-SORCS1-5:1	XLOC_008944	linc-SORCS1-2	NA	NA	NA	inter
CUST_50528_PI429285431	6.9740825	P	6.5180826	P	1.37173319350929	0	lncRNA	54224-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030387 range=chrX:149108362-149132635 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030387 range=chrX:149108362-149132635 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	149108362	149111361	+	NA	NA	NA	NA	CXorf40B	NA	chrX:149100415-149106716	inter
LNCA_21_P0009380	4.7175345	P	4.696863	P	1.01443153538858	0	lncRNA	TCONS_00025844	NA	NA	NA	NA	XLOC_012115	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012115), lincRNA [TCONS_00025844]"	chr17:14113213-14113272	hs|17p12	Agilent_HUMAN_G3V2	TCONS_00025844	TCONS_00025844	chr17	 14113213	 14113272	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007378	0.8758921	A	0.87749684	A	0.998888297393171	0	lncRNA	ENST00000526840	NA	AY726583	NA	Hs.547927	XLOC_009515	NA	ENST00000526840	THC2605457	NA	"BROAD Institute lincRNA (XLOC_009515), lincRNA [TCONS_00019718]"	chr11:80473388-80473329	hs|11q14.1	Agilent_HUMAN_G3V2	ENST00000526840	ENST00000526840	chr11	 80473329	 80473388	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011624	0.875969	A	0.87746704	A	0.998962176709121	0	lncRNA	ENST00000512717	NA	NA	NA	NA	XLOC_l2_005826	NA	ENST00000512717	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005826), lincRNA [TCONS_l2_00011573]"	chr17:49026038-49026097	hs|17q21.33	Agilent_HUMAN_G3V2	ENST00000512717	ENST00000512717	chr17	 49026038	 49026097	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23823_PI429285431	2.9935498	A	2.8331528	A	1.11759463481723	0	lncRNA	25386-1_{1..753}	lnc-SLC29A4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC29A4-1:2	chr7	  5462424	  5463176	+	lnc-SLC29A4-1	lnc-SLC29A4-1:2	ENSG00000188365.3	AC092171.2	TNRC18	NA	chr7:5452424-5463177	inner
CUST_33249_PI429285431	0.8903101	A	0.89464426	A	0.997000297341539	0	lncRNA	34836-1_{1..3000}	n339954|AK057130|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2405|NULL|-1.1694900|-0.2647164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339954|AK057130|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2405|NULL|-1.1694900|-0.2647164	chr10	  7200571	  7203570	-	NA	NA	NA	NA	SFMBT2	NA	chr10:7200586-7213727	inner
CUST_32030_PI429285431	2.3529847	A	2.0387537	A	1.24334873423432	0	lncRNA	33750-1_{1..2029}	n338594|CR597960|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1000|NULL|-1.1811900|-0.2323559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338594|CR597960|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1000|NULL|-1.1811900|-0.2323559	chr13	 22032723	 22034751	+	NA	NA	NA	NA	ZDHHC20	"hg19_refFlat_ZDHHC20:range=chr13:21950787-220333105'pad=0,hg19_refFlat_ZDHHC20:range=chr13:21950787-220333105'pad=0 3'pad=0 strand=- repeatMasking=none,-101.20chr13:22022723-22033508"	NA	inner
CUST_29678_PI429285431	6.1218176	P	6.279922	P	0.896201843965636	0	lncRNA	31440-1_{1..499}	n333330|AY255529|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085508|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085508|3.9438100|-0.0480302	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333330|AY255529|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085508|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085508|3.9438100|-0.0480302	chr1	  6311399	  6311897	-	NA	NA	NA	NA	GPR153	NA	chr1:6307406-6321035	inner
LNCA_21_P0004922	0.8769728	A	0.8779198	A	0.999343805010172	0	lncRNA	TCONS_00011923	NA	NA	NA	NA	XLOC_005433	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005433), lincRNA [TCONS_00011923]"	chr6:113038821-113058871	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00011923	TCONS_00011923	chr6	113038821	113058871	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51290_PI429285431	2.6081486	A	3.027917	P	0.747544620181622	0	lncRNA	54896-1_{1..1712}	hg19_lincRNAsTranscripts_TCONS_l2_00008983 range=chr15:32806116-32826276 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008983 range=chr15:32806116-32826276 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 32806116	 32807827	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
CUST_32663_PI429285431	0.89978844	A	1.0884187	A	0.877438393550057	0	lncRNA	34314-1_{1..1876}	n339289|CR622191|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1721|NULL|-1.1151600|-0.2839154	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n339289|CR622191|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1721|NULL|-1.1151600|-0.2839154	chr3	 33838679	 33840554	-	NA	NA	NA	NA	PDCD6IP	"hg19_refFlat_PDCD6IP:range=chr3:33840221-339080175'pad=0,hg19_refFlat_PDCD6IP:range=chr3:33840221-339080175'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.70;hg19_refFlat_PDCD6IP:range=chr3:33840221-338681715'pad=0,hg19_refFlat_PDCD6IP:range=chr3:33840221-338681715'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.70chr3:33840066-33850555"	NA	inner
LNCA_21_P0011294	0.87818587	A	0.8792821	A	0.999240439878199	0	lncRNA	TCONS_l2_00008471	NA	NA	NA	NA	XLOC_l2_004594	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004594), lincRNA [TCONS_l2_00008471]"	chr15:28930748-28930807	hs|15q13.1	Agilent_HUMAN_G3V2	TCONS_l2_00008471	TCONS_l2_00008471	chr15	 28930748	 28930807	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30680_PI429285431	0.8920573	A	0.9035277	A	0.992080847601495	0	lncRNA	32462-1_{1..268}	n336164|X92057|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324535|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324535|0.3804900|-0.0825896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336164|X92057|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324535|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324535|0.3804900|-0.0825896	chr14	 22392657	 22392924	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12818_PI429285431	3.3101501	P	3.6381395	P	0.796645949508754	0	lncRNA	14446-2_{3001..6000}	lnc-GAS6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GAS6-3:1	chr13	114634636	114637635	-	lnc-GAS6-3	lnc-GAS6-3:1	XLOC_010743	linc-GAS6-2	NA	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10"	NA	inter
CUST_17606_PI429285431	5.089079	P	5.1054897	P	0.98868942061367	0	lncRNA	19330-3_{6001..9000}	lnc-SOX11-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SOX11-3:2	chr2	  6114718	  6117717	+	lnc-SOX11-3	lnc-SOX11-3:2	XLOC_001327	linc-RSAD2-2	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-58.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.50;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00"	NA	inter
CUST_20479_PI429285431	7.498654	P	8.096328	P	0.660818508461937	0	lncRNA	22122-1_{1..407}	lnc-RBPMS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBPMS-1:1	chr8	 30454769	 30455175	+	lnc-RBPMS-1	lnc-RBPMS-1:1	ENSG00000253112.1	CTD-2373N4.5	GTF2E2	NA	chr8:30444769-30465049	inner
CUST_16860_PI429285431	0.9018547	A	0.9099294	A	0.994418678236005	0	lncRNA	18566-1_{1..1614}	lnc-IRF2-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRF2-2:5	chr4	185303288	185304901	-	lnc-IRF2-2	lnc-IRF2-2:5	XLOC_004205	linc-ENPP6-2	IRF2	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10chr4:185308876-185313530"	NA	inter
CUST_16971_PI429285431	0.8890899	A	0.89810616	A	0.993769892903159	0	lncRNA	18683-1_{1..2618}	lnc-WHAMM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WHAMM-1:1	chr15	 83512379	 83514996	+	lnc-WHAMM-1	lnc-WHAMM-1:1	XLOC_011334	linc-FAM103A1	WHAMM	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90chr15:83502379-83503613"	NA	inter
CUST_48470_PI429285431	0.8876364	A	0.9026774	A	0.989628531728281	0	lncRNA	52322-1_{1..548}	hg19_lincRNAsTranscripts_TCONS_l2_00001807 range=chr1:224142023-224149914 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001807 range=chr1:224142023-224149914 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	224142023	224142570	-	NA	NA	NA	NA	LOC441124	NA	chr1:224133977-224141141	inter
CUST_36224_PI429285431	2.6375768	A	3.199574	P	0.677363803377278	0	lncRNA	37475-3_{6001..8078}	n344766|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_315|NULL|-1.3189000|-0.2587506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344766|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_315|NULL|-1.3189000|-0.2587506	chr14	 98398666	 98400743	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2009_PI429285431	6.6119447	P	6.5841446	P	1.01945641720659	0	lncRNA	2000-1_{1..421}	"transcript_id ""ENST00000507776.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507776.1"" | genecode_v17"	chr4	187981253	187981673	+	ENSG00000250971.1	ENST00000507776.1	RP11-696F12.1	RP11-696F12.1-001	NA	NA	NA	inter
CUST_14569_PI429285431	0.898343	A	0.9080838	A	0.993270934187077	0	lncRNA	16236-1_{1..3000}	lnc-GNG8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNG8-1:1	chr19	 47139404	 47142403	-	lnc-GNG8-1	lnc-GNG8-1:1	XLOC_013368	linc-GNG8	DACT3	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80chr19:47150869-47152802"	NA	inter
CUST_37574_PI429285431	7.9096346	P	8.225647	P	0.80328709245469	0	lncRNA	38676-1_{1..1307}	n346050|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1600|NULL|-1.3084600|-0.2233181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346050|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1600|NULL|-1.3084600|-0.2233181	chr21	 46424358	 46425664	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31145_PI429285431	1.1881932	A	0.91682523	A	1.20695172239508	0	lncRNA	32940-1_{1..226}	n337474|EF100441|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394856|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394856|-1.2647800|-0.1340861	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337474|EF100441|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394856|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394856|-1.2647800|-0.1340861	chr6	144263761	144263986	-	NA	NA	NA	NA	PLAGL1	NA	chr6:144261437-144385735	inner
CUST_43133_PI429285431	1.664788	A	1.599149	A	1.04654837545588	0	lncRNA	47947-1_{1..2765}	ENST00000567473 havana:lincRNA chromosome:GRCh37:HG7_PATCH:142445732:142458950:1 gene:ENSG00000261106 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,ensembl.GRCh37.72,"	>ENST00000567473 havana:lincRNA chromosome:GRCh37:HG7_PATCH:142445732:142458950:1 gene:ENSG00000261106 gene_biotype:lincRNA transcript_biotype:lincRNA	chrHG7_PATCH	142445732	142448496	+	ENSG00000261106	ENST00000567473	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80"	NA	Unknown
CUST_47301_PI429285431	11.246584	P	10.345917	P	1.8669289192746	0	lncRNA	51367-1_{1..695}	"gi|150456445|ref|NR_003605.1| Homo sapiens ZNFX1 antisense RNA 1 (ZNFX1-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|150456445|ref|NR_003605.1| Homo sapiens ZNFX1 antisense RNA 1 (ZNFX1-AS1), transcript variant 2, non-coding RNA"	Chr20	 47894715	 47895409	+	441951	NR_003605.1	NA	NA	NA	NA	NA	inter
CUST_44173_PI429285431	3.0498767	A	3.2565212	P	0.866550360080658	0	lncRNA	48831-1_{1..631}	"gi|410170460|ref|XR_171084.1| PREDICTED: Homo sapiens uncharacterized LOC101059928, transcript variant 2 (LOC101059928), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170460|ref|XR_171084.1| PREDICTED: Homo sapiens uncharacterized LOC101059928, transcript variant 2 (LOC101059928), misc_RNA"	NA	NA	NA	NA	NA	XR_171084.1	NA	NA	NA	NA	NA	Unknown
CUST_21504_PI429285431	0.8808464	A	0.8793522	A	1.00103623704018	0	lncRNA	23122-1_{1..905}	lnc-ANXA4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANXA4-1:1	chr2	 70008652	 70009556	+	lnc-ANXA4-1	lnc-ANXA4-1:1	ENSG00000234198.2	AC092431.1	ANXA4	NA	chr2:69998652-70018692	inner
CUST_11524_PI429285431	1.5130572	A	1.0206794	A	1.40676154174046	0	lncRNA	13094-1_{1..403}	lnc-TP53TG3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TP53TG3-3:1	chr16	 32335100	 32335502	-	lnc-TP53TG3-3	lnc-TP53TG3-3:1	XLOC_011921	linc-C16orf58-3	NA	NA	NA	inter
LNCA_21_P0009413	3.8799946	P	4.20356	P	0.799092600260358	0	lncRNA	TCONS_00026155	NA	NA	NA	NA	XLOC_012568	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012568), lincRNA [TCONS_00026155]"	chr17:70424411-70417081	hs|17q24.3	Agilent_HUMAN_G3V2	TCONS_00026155	TCONS_00026155	chr17	 70417081	 70424411	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22787_PI429285431	5.3427453	P	4.9177012	P	1.34261354288273	0	lncRNA	24367-1_{1..361}	lnc-PAQR4-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PAQR4-1:6	chr16	  3050087	  3050447	+	lnc-PAQR4-1	lnc-PAQR4-1:6	ENSG00000262152.1	LINC00514	NA	NA	NA	inter
CUST_138_PI429201921	7.1679773	P	7.0704327	P	1.06995090524103	0	lncRNA	124-2_{3001..3729}	TC07002996.hg.1	TCONS_l2_00026666-XLOC_l2_013877 // Broad TUCP // linc-GUSB-6 chr7:-:66367519-66371249 // chr7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr7:-:66367519-66371249	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00026666-XLOC_l2_013877	linc-GUSB-6	chr7	 66367519	 66371249	-	NA	NA	NA	NA	SKI	NA	chr1:2160134-2162177	Unknown
LNCA_21_P0001129	2.0944831	A	0.92878807	A	2.24341267795642	0	lncRNA	ENST00000455238	NA	NA	NA	NA	XLOC_000826	NA	ENST00000455238	NA	NA	"BROAD Institute lincRNA (XLOC_000826), lincRNA [TCONS_00000518]"	chr1:48547868-48544691	hs|1p33	Agilent_HUMAN_G3V2	ENST00000455238	ENST00000455238	chr1	 48544691	 48547868	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43689_PI429285431	0.8886092	A	0.9005546	A	0.991754263797332	0	lncRNA	48440-2_{3001..5266}	"gi|384081583|ref|NR_047564.1| Homo sapiens crumbs homolog 1 (Drosophila) (CRB1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384081583|ref|NR_047564.1| Homo sapiens crumbs homolog 1 (Drosophila) (CRB1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NR_047564.1	NA	NA	NA	NA	NA	Unknown
CUST_15953_PI429285431	6.0737395	P	5.1386647	P	1.91198976433319	0	lncRNA	17650-1_{1..1556}	lnc-SHB-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SHB-1:4	chr9	 38072038	 38073593	-	lnc-SHB-1	lnc-SHB-1:4	XLOC_007686	linc-SHB	SHB	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80chr9:38062038-38069210"	NA	inter
CUST_11199_PI429285431	0.91680104	A	0.9173645	A	0.999609515548548	0	lncRNA	12757-1_{1..411}	lnc-FKBP3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FKBP3-2:1	chr14	 45552071	 45552481	-	lnc-FKBP3-2	lnc-FKBP3-2:1	XLOC_011010	linc-KLHL28-2	FAM179B	NA	chr14:45542071-45543634	inter
CUST_44274_PI429285431	0.90631056	A	0.9090376	A	0.998111545291411	0	lncRNA	48912-2_{3001..6000}	"gi|224451008|ref|NR_027038.1| Homo sapiens uncharacterized LOC401093 (LOC401093), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224451008|ref|NR_027038.1| Homo sapiens uncharacterized LOC401093 (LOC401093), transcript variant 1, non-coding RNA"	Chr3	151983405	151986404	-	401093	NR_027038.1	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90"	NA	inter
CUST_43079_PI429285431	6.132903	P	5.99028	P	1.10391033949687	0	lncRNA	47245-1_{1..125}	ENST00000408541 ncrna:snRNA chromosome:GRCh37:10:43837234:43837358:1 gene:ENSG00000221468 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408541 ncrna:snRNA chromosome:GRCh37:10:43837234:43837358:1 gene:ENSG00000221468 gene_biotype:snRNA transcript_biotype:snRNA	chr10	 43837234	 43837358	+	ENSG00000221468	ENST00000408541	NA	NA	NA	NA	NA	inter
CUST_29700_PI429285431	6.710355	P	6.7170334	P	0.995381583704633	0	lncRNA	31462-1_{1..956}	n333365|BC001876|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086102_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086102_06|-1.1709700|-0.4116371	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333365|BC001876|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086102_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086102_06|-1.1709700|-0.4116371	chr6	  3089175	  3090130	+	NA	NA	NA	NA	RIPK1	NA	chr6:3079175-3100131	inner
CUST_14719_PI429285431	0.88887954	A	1.0839283	A	0.873543371524228	0	lncRNA	16383-1_{1..666}	lnc-DBH-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DBH-2:1	chr9	136619625	136620290	+	lnc-DBH-2	lnc-DBH-2:1	XLOC_007595	linc-WDR5	VAV2	NA	chr9:136627016-136630083	inter
CUST_20763_PI429285431	0.89799106	A	0.90137804	A	0.997655077997535	0	lncRNA	22396-1_{1..540}	lnc-ARPP19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ARPP19-1:1	chr15	 52941682	 52942221	-	lnc-ARPP19-1	lnc-ARPP19-1:1	ENSG00000259935.1	RP11-519C12.1	KIAA1370	NA	chr15:52931682-52952063	inner
CUST_15397_PI429285431	2.01457	A	1.2369034	A	1.71435584795965	0	lncRNA	17081-2_{3001..4371}	lnc-CWF19L2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CWF19L2-1:2	chr11	107185073	107186443	-	lnc-CWF19L2-1	lnc-CWF19L2-1:2	XLOC_009544	linc-GUCY1A2	NA	NA	NA	inter
CUST_46936_PI429285431	10.300688	P	9.9807	P	1.24832016562319	0	lncRNA	51045-1_{1..809}	"gi|332801042|ref|NR_038193.1| Homo sapiens methyltransferase like 23 (METTL23), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|332801042|ref|NR_038193.1| Homo sapiens methyltransferase like 23 (METTL23), transcript variant 7, non-coding RNA"	Chr17	 74722912	 74723720	+	124512	NR_038193.1	NA	NA	NA	NA	NA	inter
CUST_30815_PI429285431	0.90019596	A	0.8987044	A	1.00103440523708	0	lncRNA	32602-1_{1..314}	n336742|Z75937|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328104|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328104|-1.3409800|-0.2739583	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336742|Z75937|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328104|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328104|-1.3409800|-0.2739583	chr14	 22466180	 22466493	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014701	3.2789793	P	3.1014042	P	1.13098131916564	0	lncRNA	XR_111953	XR_111953	XR_111953	NA	Hs.638391	LOC100505799	uncharacterized LOC100505799	ENST00000415019	THC2516086	NA	"PREDICTED: Homo sapiens hypothetical LOC100505799 (LOC100505799), miscRNA [XR_111953]"	chr1:158168340-158168281	hs|1q23.1	Agilent_HUMAN_G3V2	XR_111953	XR_111953	chr1	158168281	158168340	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36633_PI429285431	0.8917456	A	1.1656094	A	0.827101448631224	0	lncRNA	37826-1_{1..1062}	n345129|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_678|NULL|-1.3821400|-0.2184009	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345129|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_678|NULL|-1.3821400|-0.2184009	chr10	123710913	123711974	-	NA	NA	NA	NA	NSMCE4A	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30chr10:123716603-123722271"	NA	inter
CUST_17091_PI429285431	1.0611918	A	0.9001013	A	1.11813198898419	0	lncRNA	18799-1_{1..1697}	lnc-ZNF30-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF30-2:1	chr19	 35398346	 35400042	+	lnc-ZNF30-2	lnc-ZNF30-2:1	XLOC_013046	linc-ZNF30-2	NA	NA	NA	inter
CUST_33220_PI429285431	3.3365693	P	3.4163191	P	0.946221731402469	0	lncRNA	34809-1_{1..1576}	n339917|CR617459|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2366|NULL|-0.9934540|-0.3965961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339917|CR617459|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2366|NULL|-0.9934540|-0.3965961	chr18	 68156865	 68158440	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50070_PI429285431	1.296451	A	1.1748621	A	1.08793238811093	0	lncRNA	53803-1_{1..1020}	hg19_lincRNAsTranscripts_TCONS_l2_00027818 range=chr8:64682002-64699937 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027818 range=chr8:64682002-64699937 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 64682002	 64683021	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22661_PI429285431	1.1304505	A	2.212183	A	0.472461114639087	0	lncRNA	24245-1_{1..1495}	lnc-RSL1D1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RSL1D1-2:1	chr16	 11974932	 11976426	-	lnc-RSL1D1-2	lnc-RSL1D1-2:1	ENSG00000261560.1	RP11-166B2.3	GSPT1	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10chr16:11964932-11986426"	NA	inner
CUST_19351_PI429285431	1.4161674	A	1.0287969	A	1.3080072160886	0	lncRNA	21017-1_{1..611}	lnc-POLR3E-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POLR3E-2:2	chr16	 22389462	 22390072	+	lnc-POLR3E-2	lnc-POLR3E-2:2	ENSG00000260790.1	RP11-21M24.2	CDR2	NA	chr16:22379462-22385938	inter
CUST_26982_PI429285431	5.379191	P	5.4564924	P	0.947828929179165	0	lncRNA	28508-1_{1..361}	n324072|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052650|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052650|-0.8698820|-0.1794466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324072|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052650|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052650|-0.8698820|-0.1794466	chr9	 74062071	 74062431	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16131_PI429285431	1.7611322	A	1.9516193	A	0.876309801139325	0	lncRNA	17837-1_{1..466}	lnc-HES1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HES1-2:2	chr3	193826644	193827109	+	lnc-HES1-2	lnc-HES1-2:2	XLOC_002975	linc-HES1-1	NA	NA	NA	inter
CUST_4091_PI429285431	0.87940663	A	0.8817447	A	0.998380685877759	0	lncRNA	4052-1_{1..303}	"transcript_id ""ENST00000539222.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539222.1"" | genecode_v17"	chr11	115803575	115803877	+	ENSG00000257067.1	ENST00000539222.1	AP000797.4	AP000797.4-002	NA	NA	NA	inter
LNCA_21_P0003896	0.8773916	A	0.9624435	A	0.942750620478097	0	lncRNA	TCONS_00009065	NA	NA	NA	NA	XLOC_003970	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003970), lincRNA [TCONS_00009065]"	chr4:64329405-64329346	hs|4q13.1	Agilent_HUMAN_G3V2	TCONS_00009065	TCONS_00009065	chr4	 64329346	 64329405	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010256	6.717645	P	6.7976522	P	0.946052925285606	0	lncRNA	TCONS_00029037	NA	NA	NA	NA	XLOC_013957	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013957), lincRNA [TCONS_00029037]"	chr21:44299783-44303726	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029037	TCONS_00029037	chr21	 44299783	 44303726	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24978_PI429285431	6.267092	P	6.509445	P	0.845365417252563	0	lncRNA	26518-1_{1..488}	lnc-ATF7IP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATF7IP2-2:1	chr16	 10130843	 10131330	+	lnc-ATF7IP2-2	lnc-ATF7IP2-2:1	ENSG00000261810.1	RP11-895K13.2	GRIN2A	NA	chr16:10120843-10141154	inner
CUST_12300_PI429285431	0.8893449	A	0.9034435	A	0.990275189943661	0	lncRNA	13911-1_{1..386}	lnc-ETAA1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ETAA1-4:3	chr2	 67791935	 67792320	+	lnc-ETAA1-4	lnc-ETAA1-4:3	XLOC_001515	linc-PNO1-1	NA	NA	NA	inter
LNCA_21_P0008493	0.87596065	A	0.8796736	A	0.997429688098767	0	lncRNA	TCONS_00022883	NA	NA	NA	NA	XLOC_011137	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011137), lincRNA [TCONS_00022883]"	chr14:101985915-101985856	hs|14q32.31	Agilent_HUMAN_G3V2	TCONS_00022883	TCONS_00022883	chr14	101985856	101985915	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3765_PI429285431	2.5713682	A	1.7527437	A	1.76372361436933	0	lncRNA	3733-1_{1..2368}	"transcript_id ""ENST00000422206.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422206.1"" | genecode_v17"	chr10	 92213927	 92216294	+	ENSG00000224750.2	ENST00000422206.1	RP11-94M14.2	RP11-94M14.2-001	NA	NA	NA	inter
CUST_34323_PI429285431	7.9264507	P	7.583244	P	1.26857313924815	0	lncRNA	35817-1_{1..3000}	n341186|AX747433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3652|NULL|5.8046200|-0.0557101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341186|AX747433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3652|NULL|5.8046200|-0.0557101	chr7	 11486855	 11489854	-	NA	NA	NA	NA	THSD7A	NA	chr7:11476855-11871824	inner
CUST_10966_PI429285431	4.097847	P	3.6038587	P	1.40833280553738	0	lncRNA	12508-1_{1..502}	lnc-SDK2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SDK2-5:1	chr17	 71945883	 71946384	-	lnc-SDK2-5	lnc-SDK2-5:1	XLOC_012571	linc-SDK2-1	NA	NA	NA	inter
LNCA_21_P0012427	3.770702	P	4.099842	P	0.796010849656031	0	lncRNA	AK127293	NA	AK127293	NA	Hs.665977	XLOC_l2_010064	NA	NA	THC2477880	NA	"BROAD Institute lincRNA (XLOC_l2_010064), lincRNA [TCONS_l2_00019087]"	chr3:195476705-195476764	hs|3q29	Agilent_HUMAN_G3V2	AK127293	AK127293	chr3	195476705	195476764	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8428_PI429285431	8.2934885	P	7.962265	P	1.25807985645198	0	lncRNA	9999-1_{1..880}	lnc-KIAA1755-5:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1755-5:6	chr20	 37063840	 37064719	-	lnc-KIAA1755-5	lnc-KIAA1755-5:6	ENSG00000196756	RP4-564F22.2	NA	NA	NA	inter
CUST_46677_PI429285431	2.416337	A	2.2397223	A	1.13022867708306	0	lncRNA	50845-1_{1..2371}	"gi|223972681|ref|NR_026950.1| Homo sapiens pyruvate dehydrogenase phosphatase regulatory subunit pseudogene (LOC283922), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223972681|ref|NR_026950.1| Homo sapiens pyruvate dehydrogenase phosphatase regulatory subunit pseudogene (LOC283922), non-coding RNA"	Chr16	 74366304	 74368674	-	283922	NR_026950.1	NA	NA	NA	NA	NA	inter
CUST_19046_PI429285431	5.128724	P	4.966584	P	1.11894567893335	0	lncRNA	20736-1_{1..1501}	lnc-CSMD1-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CSMD1-8:1	chr8	  1784158	  1785658	-	lnc-CSMD1-8	lnc-CSMD1-8:1	ENSG00000230340	AC019257.1	ARHGEF10	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40chr8:1774158-1794348"	NA	inner
CUST_26038_PI429285431	2.5326538	A	2.3857908	A	1.10715944234307	0	lncRNA	27555-1_{1..550}	lnc-CEP120-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CEP120-1:1	chr5	124036707	124037256	-	lnc-CEP120-1	lnc-CEP120-1:1	ENSG00000250487.1	RP11-43D2.6	ZNF608	NA	chr5:124026707-124046931	inner
CUST_4703_PI429285431	0.89510715	A	0.8989921	A	0.997310780307988	0	lncRNA	4650-1_{1..525}	"transcript_id ""ENST00000455857.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455857.1"" | genecode_v17"	chr13	114586640	114587164	+	ENSG00000230544.1	ENST00000455857.1	LINC00453	LINC00453-001	NA	NA	NA	inter
LNCA_21_P0006091	1.6258669	A	0.8774978	A	1.67989271571598	0	lncRNA	ENST00000457976	XR_108975	XR_108975	NA	NA	XLOC_007776	NA	ENST00000457976	THC2648833	NA	"PREDICTED: Homo sapiens hypothetical LOC100128909 (LOC100128909), miscRNA [XR_108975]"	chr9:93881479-93881420	hs|9q22.2	Agilent_HUMAN_G3V2	ENST00000457976	ENST00000457976	chr9	 93881420	 93881479	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005743	0.8765644	A	0.8776266	A	0.999264010038385	0	lncRNA	TCONS_00014810	NA	NA	NA	NA	XLOC_006886	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006886), lincRNA [TCONS_00014810]"	chr8:102145699-102145758	hs|8q22.3	Agilent_HUMAN_G3V2	TCONS_00014810	TCONS_00014810	chr8	102145699	102145758	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45148_PI429285431	1.5050896	A	1.1876233	A	1.24614012107975	0	lncRNA	49628-1_{1..1013}	"gi|336594700|ref|NR_038919.1| Homo sapiens uncharacterized LOC100128993 (LOC100128993), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|336594700|ref|NR_038919.1| Homo sapiens uncharacterized LOC100128993 (LOC100128993), non-coding RNA"	Chr8	 19041184	 19042196	-	100128993	NR_038919.1	NA	NA	NA	NA	NA	inter
CUST_38147_PI429285431	5.706007	P	6.3883934	P	0.623133679601963	0	lncRNA	39219-1_{1..1537}	n381344|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hmj.2||3.8897800|-0.2252666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n381344|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hmj.2||3.8897800|-0.2252666	chr1	220439520	220441056	-	NA	NA	NA	NA	RAB3GAP2	NA	chr1:220429520-220445843	inner
CUST_35270_PI429285431	4.237621	P	3.5052068	P	1.66141697512428	0	lncRNA	36671-1_{1..1968}	n342280|AL357213|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4772|NULL|0.2830860|-0.2138638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342280|AL357213|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4772|NULL|0.2830860|-0.2138638	chr15	 85177460	 85179427	-	NA	NA	NA	NA	WDR73	"hg19_refFlat_EGLN1:range=chr1:231502157-2315576345'pad=0,hg19_refFlat_EGLN1:range=chr1:231502157-2315576345'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80chr15:85185999-85197521"	NA	inner
CUST_27888_PI429285431	1.1690576	A	0.90627843	A	1.19978771958017	0	lncRNA	29482-1_{1..348}	n325125|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332167|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332167|-1.2272000|-0.3088861	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325125|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332167|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332167|-1.2272000|-0.3088861	chr2	145768314	145768661	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19077_PI429285431	3.825718	P	4.862438	P	0.487434408126143	0	lncRNA	20768-1_{1..527}	lnc-BMP6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>lnc-BMP6-2:1	chr6	  8342558	  8343084	+	lnc-BMP6-2	lnc-BMP6-2:1	ENSG00000232234	RP11-203H2.1	NA	NA	NA	inter
CUST_41097_PI429285431	0.8788255	A	0.8775519	A	1.00088318202493	0	lncRNA	41800-1_{1..69}	ENST00000384977 ncrna:miRNA chromosome:GRCh37:X:133303839:133303907:-1 gene:ENSG00000207710 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384977 ncrna:miRNA chromosome:GRCh37:X:133303839:133303907:-1 gene:ENSG00000207710 gene_biotype:miRNA transcript_biotype:miRNA	chrX	133303839	133303907	-	ENSG00000207710	ENST00000384977	NA	NA	NA	NA	NA	inter
CUST_7115_PI429285431	0.8797596	A	1.3215837	A	0.736203186883284	0	lncRNA	7051-1_{1..938}	"transcript_id ""ENST00000440614.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440614.1"" | genecode_v17"	chrX	133733487	133734424	+	ENSG00000235813.1	ENST00000440614.1	RP11-308B5.2	RP11-308B5.2-001	PLAC1	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-20.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10chrX:133723487-133750284"	NA	inner
CUST_21514_PI429285431	0.88686466	A	0.93058276	A	0.970151457661577	0	lncRNA	23132-1_{1..1900}	lnc-MORF4L1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-MORF4L1-2:1	chr15	 79276804	 79278703	+	lnc-MORF4L1-2	lnc-MORF4L1-2:1	ENSG00000177699.4	RP11-16K12.1	RASGRF1	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_RASGRF1:range=chr15:79254486-793828405'pad=0,hg19_refFlat_RASGRF1:range=chr15:79254486-793828405'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RASGRF1:range=chr15:79254486-792962885'pad=0,hg19_refFlat_RASGRF1:range=chr15:79254486-792962885'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-61.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00chr15:79266804-79288268"	NA	inner
CUST_14958_PI429285431	2.3866966	A	2.1604834	A	1.16976051729439	0	lncRNA	16622-1_{1..3000}	lnc-PREX1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PREX1-2:3	chr20	 47131673	 47134672	-	lnc-PREX1-2	lnc-PREX1-2:3	XLOC_013779	linc-SULF2-10	NA	NA	NA	inter
CUST_51741_PI429285431	1.4793227	A	0.88985413	A	1.50469237802391	0	lncRNA	55294-1_{1..1840}	hg19_lincRNAsTranscripts_TCONS_l2_00011859 range=chr18:56751133-56753134 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011859 range=chr18:56751133-56753134 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr18	 56751133	 56752972	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33021_PI429285431	0.89146596	A	0.89140195	A	1.00004436933532	0	lncRNA	34636-2_{3001..3179}	n339703|AL831863|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2148|NULL|-1.1734200|-0.3944559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339703|AL831863|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2148|NULL|-1.1734200|-0.3944559	chr3	179515749	179515927	-	NA	NA	NA	NA	PEX5L	NA	chr3:179518050-179525908	inner
CUST_17414_PI429285431	0.8911479	A	2.130592	A	0.423535821785821	0	lncRNA	19139-1_{1..577}	lnc-CCRN4L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCRN4L-1:1	chr4	139722072	139722648	+	lnc-CCRN4L-1	lnc-CCRN4L-1:1	XLOC_003710	linc-CCRN4L-1	NA	NA	NA	inter
CUST_19664_PI429285431	0.8770662	A	0.8786323	A	0.998915051183542	0	lncRNA	21320-1_{1..737}	lnc-ACSS3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACSS3-2:2	chr12	 81866299	 81867035	+	lnc-ACSS3-2	lnc-ACSS3-2:2	ENSG00000258162.1	RP11-315E17.1	PPFIA2	NA	chr12:81856299-81876733	inner
LNCA_21_P0004598	2.8729877	A	3.6167865	P	0.597164869067146	0	lncRNA	BX647715	NA	BX647715	NA	Hs.628573	XLOC_005299	NA	NA	THC2551010	NA	"BROAD Institute lincRNA (XLOC_005299), lincRNA [TCONS_00011169]"	chr6:44704081-44704140	hs|6p21.1	Agilent_HUMAN_G3V2	BX647715	BX647715	chr6	 44704081	 44704140	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18337_PI429285431	0.8906956	A	1.0913882	A	0.87013273513592	0	lncRNA	20066-1_{1..930}	lnc-RBM24-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RBM24-1:2	chr6	 17130825	 17131754	+	lnc-RBM24-1	lnc-RBM24-1:2	ENSG00000230873	RP3-486B10.1	FLJ23152	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.27;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-21.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10chr6:17120825-17131603"	NA	inner
CUST_21906_PI429285431	0.88968015	A	0.8838039	A	1.00408141249024	0	lncRNA	23515-1_{1..438}	lnc-LONP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LONP2-3:1	chr16	 48621050	 48621487	+	lnc-LONP2-3	lnc-LONP2-3:1	ENSG00000261267.1	RP11-44I10.3	N4BP1	NA	chr16:48611050-48631314	inner
CUST_31695_PI429285431	5.220292	P	4.8047843	P	1.33376796189508	0	lncRNA	33439-1_{1..944}	n338223|AF143872|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|615|NULL|-1.1565400|-0.2835426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338223|AF143872|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|615|NULL|-1.1565400|-0.2835426	chr1	151097096	151098039	+	NA	NA	NA	NA	SEMA6C	NA	chr1:151104161-151108018	inter
CUST_28339_PI429285431	4.8957024	P	5.2720504	P	0.770385257295831	0	lncRNA	29985-1_{1..461}	n325645|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045661|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045661|-1.2763900|-0.3975231	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325645|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045661|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045661|-1.2763900|-0.3975231	chr13	100391116	100391576	-	NA	NA	NA	NA	CLYBL	NA	chr13:100381116-100404619	inner
CUST_2012_PI429285431	4.2176633	P	4.8901024	P	0.627444996835641	0	lncRNA	2003-1_{1..498}	"transcript_id ""ENST00000509058.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509058.1"" | genecode_v17"	chr4	188291802	188292299	+	ENSG00000250042.1	ENST00000509058.1	RP11-91J3.2	RP11-91J3.2-001	NA	NA	NA	inter
CUST_17746_PI429285431	6.0253215	P	5.9924116	P	1.02307357417447	0	lncRNA	19476-1_{1..458}	lnc-FBXL7-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXL7-3:1	chr5	 16432314	 16432771	+	lnc-FBXL7-3	lnc-FBXL7-3:1	XLOC_004302	linc-BASP1-4	NA	NA	NA	inter
CUST_34547_PI429285431	2.1617599	A	2.6640518	A	0.705984346166718	0	lncRNA	36008-1_{1..1022}	n341429|BC042802|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3899|NULL|-0.8899570|-0.2024634	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n341429|BC042802|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3899|NULL|-0.8899570|-0.2024634	chr13	107028910	107029931	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22936_PI429285431	3.3863554	P	3.477679	P	0.938661179719591	0	lncRNA	24511-1_{1..1829}	lnc-AC069257.9.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC069257.9.1-3:2	chr3	196050701	196052529	+	lnc-AC069257.9.1-3	lnc-AC069257.9.1-3:2	ENSG00000235897.1	TM4SF19-AS1	TM4SF19	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TM4SF19:range=chr3:196050585-1960544615'pad=0,hg19_refFlat_TM4SF19:range=chr3:196050585-1960544615'pad=0 3'pad=0 strand=- repeatMasking=none,-93.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TM4SF19:range=chr3:196050688-1960544615'pad=0,hg19_refFlat_TM4SF19:range=chr3:196050688-1960544615'pad=0 3'pad=0 strand=- repeatMasking=none,-93.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40chr3:196050417-196062441"	NA	inner
LNCA_33_P3353752	5.384883	P	5.578451	P	0.87444042328618	0	lncRNA	XR_112733	XR_112733	XR_112733	   642781	Hs.679247	LOC642781	uncharacterized LOC642781	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC642781 (LOC642781), miscRNA [XR_112733]"	chr5:58336553-58336612	hs|5q11.2	Agilent_HUMAN_G3V2	XR_112733	XR_112733	chr5	 58336553	 58336612	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31660_PI429285431	4.772096	P	4.4079623	P	1.28710852298389	0	lncRNA	33411-1_{1..3000}	n338184|CR749373|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|575|NULL|0.8612660|-0.3661252	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338184|CR749373|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|575|NULL|0.8612660|-0.3661252	chr1	114420789	114423788	-	NA	NA	NA	NA	BCL2L15	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-12.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10chr1:114419436-114430169"	NA	inner
CUST_26820_PI429285431	1.5415956	A	3.623464	P	0.23620830575576	0	lncRNA	28333-1_{1..3000}	n323889|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080721|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080721|-0.3854040|-0.1649749	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323889|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000080721|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000080721|-0.3854040|-0.1649749	chrX	 40007113	 40010112	+	NA	NA	NA	NA	BCOR	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30chrX:39997113-40036582"	NA	inner
CUST_33070_PI429285431	5.6223106	P	6.508085	P	0.541196944779476	0	lncRNA	34678-1_{1..3000}	n339758|BC035147|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2205|NULL|2.2101300|-0.1877609	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339758|BC035147|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2205|NULL|2.2101300|-0.1877609	chr20	 62492567	 62495566	-	NA	NA	NA	NA	TPD52L2	"hg19_refFlat_ABHD16B:range=chr20:62492894-624943035'pad=0,hg19_refFlat_ABHD16B:range=chr20:62492894-624943035'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.60chr20:62496590-62505646"	NA	inner
LNCA_21_P0005559	2.1119902	A	1.0620164	A	2.07049224625772	0	lncRNA	TCONS_00014122	NA	NA	NA	NA	XLOC_006073	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006073), lincRNA [TCONS_00014122]"	chr7:45241866-45241925	hs|7p13	Agilent_HUMAN_G3V2	TCONS_00014122	TCONS_00014122	chr7	 45241866	 45241925	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20308_PI429285431	1.7152275	A	2.0315592	A	0.803109327105765	0	lncRNA	21951-1_{1..731}	lnc-FGF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FGF1-1:1	chr5	142248365	142249095	-	lnc-FGF1-1	lnc-FGF1-1:1	ENSG00000226272.1	ARHGAP26-AS1	ARHGAP26	NA	chr5:142238365-142258487	inner
CUST_40979_PI429285431	1.1121297	A	1.3152013	A	0.86869907112084	0	lncRNA	41649-2_{3001..6000}	n411097|NR_038921|lncRNA|Homosapiens||RefGeneNoncode|NR_038921||-1.2774000|-0.3500198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n411097|NR_038921|lncRNA|Homosapiens||RefGeneNoncode|NR_038921||-1.2774000|-0.3500198	chr10	 22544000	 22546999	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010896	1.906183	A	1.8499784	A	1.03972687661599	0	lncRNA	BC065757	NA	BC065757	NA	Hs.713428	LOC728218	uncharacterized LOC728218	NA	THC2509076	NA	"BROAD Institute lincRNA (XLOC_l2_002050), lincRNA [TCONS_l2_00003700]"	chr10:89156814-89156755	hs|10q23.2	Agilent_HUMAN_G3V2	BC065757	BC065757	chr10	 89156755	 89156814	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008672	1.0990312	A	0.91393906	A	1.13688958016812	0	lncRNA	TCONS_00023504	NA	NA	NA	NA	XLOC_011348	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011348), lincRNA [TCONS_00023504]"	chr15:91061852-91061911	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00023504	TCONS_00023504	chr15	 91061852	 91061911	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27793_PI429285431	0.91414344	A	0.92771596	A	0.990636360498551	0	lncRNA	29379-1_{1..3000}	n325021|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078391|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078391|-0.7765790|-0.2706469	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325021|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078391|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078391|-0.7765790|-0.2706469	chr20	 25069424	 25072423	-	NA	NA	NA	NA	VSX1	NA	chr20:25059424-25062767	inter
CUST_35382_PI429285431	1.0816419	A	1.2729095	A	0.875835844549628	0	lncRNA	36790-1_{1..1591}	n342431|AK092980|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4924|NULL|1.8390300|-0.1846212	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342431|AK092980|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4924|NULL|1.8390300|-0.1846212	chr2	 96080755	 96082345	+	NA	NA	NA	NA	FAHD2A	NA	chr2:96070755-96078879	inter
CUST_37537_PI429285431	4.6656713	P	4.458008	P	1.15481623902048	0	lncRNA	38642-1_{1..574}	n346013|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1563|NULL|-1.4249900|-0.1574722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346013|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1563|NULL|-1.4249900|-0.1574722	chr4	119512927	119513500	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30629_PI429285431	1.477424	A	1.4944965	A	0.988235988261174	0	lncRNA	32411-1_{1..361}	n335974|X72481|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323323|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323323|2.1109300|-0.2084200	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335974|X72481|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323323|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323323|2.1109300|-0.2084200	chr2	 89157162	 89157522	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13329_PI429285431	0.90658057	A	0.9187206	A	0.991620477995597	0	lncRNA	14965-1_{1..826}	lnc-CLCN3-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLCN3-4:5	chr4	171199515	171200340	+	lnc-CLCN3-4	lnc-CLCN3-4:5	XLOC_003775	linc-GALNTL6-4	NA	NA	NA	inter
CUST_33640_PI429285431	0.90682715	A	0.9197836	A	0.9910594794887	0	lncRNA	35205-1_{1..349}	n340402|AF009273|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2863|NULL|-0.9642630|-0.2947722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340402|AF009273|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2863|NULL|-0.9642630|-0.2947722	chr5	 11257948	 11258296	+	NA	NA	NA	NA	CTNND2	NA	chr5:11247948-11268297	inner
LNCA_21_P0008794	0.8848026	A	0.8968143	A	0.991708688124732	0	lncRNA	TCONS_00023817	NA	NA	NA	NA	XLOC_011597	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011597), lincRNA [TCONS_00023817]"	chr15:97885426-97883328	hs|15q26.2	Agilent_HUMAN_G3V2	TCONS_00023817	TCONS_00023817	chr15	 97883328	 97885426	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34096_PI429285431	1.8399119	A	1.7418818	A	1.07031102887414	0	lncRNA	35621-1_{1..1536}	n340918|CR599788|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3383|NULL|2.0314700|-0.1646780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340918|CR599788|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3383|NULL|2.0314700|-0.1646780	chr17	 79369408	 79370943	-	NA	NA	NA	NA	BAHCC1	NA	chr17:79373540-79380944	inter
CUST_36873_PI429285431	11.947049	P	11.74336	P	1.15163935810561	0	lncRNA	38032-1_{1..993}	n345342|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_891|NULL|-1.3366300|-0.2495957	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345342|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_891|NULL|-1.3366300|-0.2495957	chr17	 15386817	 15387809	+	NA	NA	NA	NA	FAM18B2-CDRT4	NA	chr17:15376817-15400840	inter
CUST_7949_PI429285431	4.584421	P	4.613784	P	0.979852841171586	0	lncRNA	9561-1_{1..2863}	lnc-ELTD1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ELTD1-6:1	chr1	 79127046	 79129908	-	lnc-ELTD1-6	lnc-ELTD1-6:1	ENSG00000249107	ENST00000513923	IFI44	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_IFI44:range=chr1:79115881-791294965'pad=0,hg19_refFlat_IFI44:range=chr1:79115881-791294965'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-21.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30chr1:79117046-79129763"	NA	inner
CUST_48584_PI429285431	0.9106971	A	0.9329335	A	0.984705075907793	0	lncRNA	52432-1_{1..1946}	hg19_lincRNAsTranscripts_TCONS_l2_00014437 range=chr2:10675219-10682163 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014437 range=chr2:10675219-10682163 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 10675219	 10677164	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46332_PI429285431	0.8840378	A	0.89351475	A	0.993452607025075	0	lncRNA	50558-3_{6001..6636}	"gi|304766544|ref|NR_015358.2| Homo sapiens long intergenic non-protein coding RNA 643 (LINC00643), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|304766544|ref|NR_015358.2| Homo sapiens long intergenic non-protein coding RNA 643 (LINC00643), non-coding RNA"	Chr14	 62590075	 62590710	+	646113	NR_015358.2	NA	NA	NA	NA	NA	inter
CUST_7718_PI429285431	3.5304437	P	3.8850493	P	0.78208341771916	0	lncRNA	9349-1_{1..1770}	lnc-C1orf124-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf124-2:1	chr1	231503542	231505311	+	lnc-C1orf124-2	lnc-C1orf124-2:1	ENSG00000245850	ENST00000499207	EGLN1	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70chr1:231499497-231514855"	NA	inner
LNCA_21_P0003240	0.87606615	A	0.8800706	A	0.997228175392079	0	lncRNA	TCONS_00006120	NA	NA	NA	NA	XLOC_002725	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002725), lincRNA [TCONS_00006120]"	chr3:86769992-86770051	hs|3p12.1	Agilent_HUMAN_G3V2	TCONS_00006120	TCONS_00006120	chr3	 86769992	 86770051	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33697_PI429285431	7.123092	P	7.3452616	P	0.857275251350426	0	lncRNA	35258-1_{1..2322}	n340473|BC040307|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2934|NULL|0.3195530|-0.2714241	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340473|BC040307|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2934|NULL|0.3195530|-0.2714241	chr17	  4929407	  4931728	+	NA	NA	NA	NA	KIF1C	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.76;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40chr17:4919407-4931694"	NA	inner
LNCA_21_P0007621	0.8755886	A	0.87825596	A	0.998152835049407	0	lncRNA	TCONS_00020551	NA	NA	NA	NA	XLOC_009864	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009864), lincRNA [TCONS_00020551]"	chr12:104795716-104795775	hs|12q23.3	Agilent_HUMAN_G3V2	TCONS_00020551	TCONS_00020551	chr12	104795716	104795775	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3562_PI429285431	5.751579	P	6.0485816	P	0.813941718197454	0	lncRNA	3532-1_{1..280}	"transcript_id ""ENST00000446184.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446184.1"" | genecode_v17"	chr9	137444584	137444863	+	ENSG00000227150.1	ENST00000446184.1	RP11-473E2.3	RP11-473E2.3-001	NA	NA	NA	inter
CUST_41999_PI429285431	8.716829	P	8.842927	P	0.916306399311934	0	lncRNA	43834-1_{1..66}	ENST00000408135 ncrna:miRNA chromosome:GRCh37:20:2633423:2633488:1 gene:ENSG00000221062 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408135 ncrna:miRNA chromosome:GRCh37:20:2633423:2633488:1 gene:ENSG00000221062 gene_biotype:miRNA transcript_biotype:miRNA	chr20	  2633423	  2633488	+	ENSG00000221062	ENST00000408135	NA	NA	NOP56	NA	chr20:2633254-2639039	inter
CUST_49027_PI429285431	3.7004893	P	3.9455624	P	0.843773041860912	0	lncRNA	52856-1_{1..655}	hg19_lincRNAsTranscripts_TCONS_l2_00021878 range=chr4:49328036-49513303 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021878 range=chr4:49328036-49513303 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 49328036	 49328690	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26072_PI429285431	0.8995428	A	0.9072236	A	0.994690222106598	0	lncRNA	27585-1_{1..568}	lnc-RASL11B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RASL11B-2:2	chr4	 53814447	 53815014	+	lnc-RASL11B-2	lnc-RASL11B-2:2	ENSG00000248115.1	RP11-752D24.2	SCFD2	NA	chr4:53804447-53824919	inner
CUST_34216_PI429285431	11.711277	P	11.692939	P	1.012792060276	0	lncRNA	35729-1_{1..1791}	n341076|AK124949|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3542|NULL|0.2787980|-0.2631528	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341076|AK124949|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3542|NULL|0.2787980|-0.2631528	chr11	 77850848	 77852638	+	NA	NA	NA	NA	ALG8	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-22.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40chr11:77840848-77850699"	NA	inter
CUST_30749_PI429285431	5.4775834	P	6.05113	P	0.671962859417887	0	lncRNA	32534-1_{1..288}	n336565|Z11945|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326407|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326407|1.8209400|-0.0684968	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336565|Z11945|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326407|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326407|1.8209400|-0.0684968	chr14	106330024	106330311	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002941	0.87831444	A	0.87947667	A	0.999194727958037	0	lncRNA	TCONS_00005976	NA	NA	NA	NA	XLOC_002606	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002606), lincRNA [TCONS_00005976]"	chr3:30433524-30433583	hs|3p24.1	Agilent_HUMAN_G3V2	TCONS_00005976	TCONS_00005976	chr3	 30433524	 30433583	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51040_PI429285431	4.906033	P	4.446666	P	1.37493841481812	0	lncRNA	54682-1_{1..1414}	hg19_lincRNAsTranscripts_TCONS_l2_00006705 range=chr13:19968875-19982245 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006705 range=chr13:19968875-19982245 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 19968875	 19970288	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9209_PI429285431	1.2067525	A	0.9027979	A	1.23452375719982	0	lncRNA	10720-2_{3001..5464}	lnc-CHFR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHFR-1:1	chr12	133492682	133495145	-	lnc-CHFR-1	lnc-CHFR-1:1	ENSG00000250790	ENST00000503695	ZNF605	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr12:133498019-133501318"	NA	inter
CUST_40668_PI429285431	4.2053075	P	4.3287244	P	0.918010843565598	0	lncRNA	41402-1_{1..1126}	n410222|NR_037169_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037169_7||-1.1071400|-0.3478786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410222|NR_037169_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037169_7||-1.1071400|-0.3478786	chr6	  3500401	  3501526	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50"	NA	inter
LNCA_21_P0010202	1.8634465	A	1.299149	A	1.47866731772672	0	lncRNA	ENST00000417138	NA	NA	NA	NA	XLOC_014071	NA	ENST00000417138	NA	NA	"BROAD Institute lincRNA (XLOC_014071), lincRNA [TCONS_00028923]"	chr21:39378905-39378846	hs|21q22.13	Agilent_HUMAN_G3V2	ENST00000417138	ENST00000417138	chr21	 39378846	 39378905	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22829_PI429285431	5.086543	P	5.1178093	P	0.978561005950365	0	lncRNA	24409-1_{1..2181}	lnc-PANK3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PANK3-3:1	chr5	167613116	167615296	-	lnc-PANK3-3	lnc-PANK3-3:1	ENSG00000253925.1	CTB-178M22.1	ODZ2	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10chr5:167603116-167624724"	NA	inner
CUST_38736_PI429285431	1.7724385	A	2.1799943	A	0.753899541684447	0	lncRNA	39729-1_{1..834}	n384246|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ckf.2||-0.8993700|-0.2750701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384246|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ckf.2||-0.8993700|-0.2750701	chr3	 40487071	 40487904	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44510_PI429285431	8.83985	P	7.0208697	P	3.5283172812892	0	lncRNA	49109-1_{1..2714}	"gi|386642864|ref|NR_047677.1| Homo sapiens threonyl-tRNA synthetase (TARS), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386642864|ref|NR_047677.1| Homo sapiens threonyl-tRNA synthetase (TARS), transcript variant 5, non-coding RNA"	Chr5	 33440882	 33443595	+	6897	NR_047677.1	NA	NA	NA	NA	NA	inter
CUST_23052_PI429285431	0.91044545	A	0.884522	A	1.01813117586695	0	lncRNA	24623-1_{1..362}	lnc-KATNA1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KATNA1-2:1	chr6	149897131	149897492	-	lnc-KATNA1-2	lnc-KATNA1-2:1	ENSG00000237502.1	RP1-12G14.6	C6orf72	NA	chr6:149887528-149907260	inner
CUST_41761_PI429285431	5.4615393	P	5.820229	P	0.779872562348751	0	lncRNA	43318-1_{1..73}	ENST00000408334 ncrna:miRNA chromosome:GRCh37:8:129162362:129162434:1 gene:ENSG00000221261 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408334 ncrna:miRNA chromosome:GRCh37:8:129162362:129162434:1 gene:ENSG00000221261 gene_biotype:miRNA transcript_biotype:miRNA	chr8	129162362	129162434	+	ENSG00000221261	ENST00000408334	NA	NA	NA	NA	NA	inter
CUST_51933_PI429285431	0.8932138	A	1.9732624	A	0.473012888731465	0	lncRNA	55474-1_{1..1977}	hg19_lincRNAsTranscripts_TCONS_l2_00016461 range=chr20:5412642-5426901 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016461 range=chr20:5412642-5426901 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	  5412642	  5414618	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_998_PI429285431	4.9312534	P	6.302394	P	0.386585491625264	0	lncRNA	987-1_{1..515}	"transcript_id ""ENST00000452037.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452037.1"" | genecode_v17"	chr2	105760581	105761095	+	ENSG00000226508.1	ENST00000452037.1	AC104655.3	AC104655.3-002	NA	NA	NA	inter
CUST_16962_PI429285431	0.8928383	A	0.90020806	A	0.994904696955297	0	lncRNA	18674-1_{1..756}	lnc-NTM-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTM-6:1	chr11	130957377	130958132	+	lnc-NTM-6	lnc-NTM-6:1	XLOC_009335	linc-NTM-6	NA	NA	NA	inter
CUST_16330_PI429285431	3.9228158	P	4.237817	P	0.803850322118972	0	lncRNA	18031-1_{1..234}	lnc-FRMD4A-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRMD4A-1:5	chr10	 13569825	 13570058	-	lnc-FRMD4A-1	lnc-FRMD4A-1:5	XLOC_008735	linc-BEND7-1	NA	NA	NA	inter
CUST_6461_PI429285431	2.9983606	A	2.112462	A	1.84791525937584	0	lncRNA	6403-1_{1..495}	"transcript_id ""ENST00000586628.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586628.1"" | genecode_v17"	chr19	 33366831	 33367325	-	ENSG00000266930.1	ENST00000586628.1	CTD-2085J24.4	CTD-2085J24.4-001	CEP89	"hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10chr19:33369904-33379327"	NA	inter
LNCA_21_P0002192	3.9316058	P	3.9346697	P	0.997878519880204	0	lncRNA	TCONS_00003621	NA	NA	NA	NA	XLOC_001412	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001412), lincRNA [TCONS_00003621]"	chr2:30572966-30582346	hs|2p23.1	Agilent_HUMAN_G3V2	TCONS_00003621	TCONS_00003621	chr2	 30572966	 30582346	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19966_PI429285431	4.6186295	P	4.4864507	P	1.09594758398371	0	lncRNA	21620-1_{1..533}	lnc-TK2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TK2-1:3	chr16	 66509505	 66510037	-	lnc-TK2-1	lnc-TK2-1:3	ENSG00000261656.1	CTD-2258A20.5	BEAN1	"hg19_refFlat_BEAN1:range=chr16:66471580-665148285'pad=0,hg19_refFlat_BEAN1:range=chr16:66471580-665148285'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.50chr16:66499505-66519770"	NA	inner
CUST_38886_PI429285431	0.90537757	A	0.9075707	A	0.998480992984697	0	lncRNA	39873-1_{1..2305}	n384825|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003nak.1||-0.2775830|-0.2354884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384825|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003nak.1||-0.2775830|-0.2354884	chr6	 13279526	 13281830	-	NA	NA	NA	NA	PHACTR1	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00chr6:13269526-13288075"	NA	inner
CUST_17906_PI429285431	0.911754	A	0.91292226	A	0.999190551655043	0	lncRNA	19637-2_{3001..3150}	lnc-TECRL-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TECRL-1:3	chr4	 64342712	 64342861	-	lnc-TECRL-1	lnc-TECRL-1:3	XLOC_003970	linc-IGFBP7-11	NA	NA	NA	inter
CUST_16398_PI429285431	6.702083	P	5.2091427	P	2.8146202767582	0	lncRNA	18094-1_{1..646}	lnc-ADAM10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAM10-2:1	chr15	 58576166	 58576811	-	lnc-ADAM10-2	lnc-ADAM10-2:1	XLOC_011486	linc-ALDH1A2-1	NA	NA	NA	inter
CUST_43427_PI429285431	3.1535673	A	3.8631907	P	0.611479738213203	0	lncRNA	48236-2_{3001..4907}	"gi|400154073|ref|NR_073092.1| Homo sapiens MYST/Esa1-associated factor 6 (MEAF6), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|400154073|ref|NR_073092.1| Homo sapiens MYST/Esa1-associated factor 6 (MEAF6), transcript variant 6, non-coding RNA"	Chr1	 37958561	 37960467	-	64769	NR_073092.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	inter
CUST_37261_PI429285431	4.445931	P	4.462519	P	0.988567923098026	0	lncRNA	38368-1_{1..1770}	n345698|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1247|NULL|-1.3148400|-0.3351147	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345698|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1247|NULL|-1.3148400|-0.3351147	chrX	 45628084	 45629853	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43898_PI429285431	10.08941	P	9.6693	P	1.33802957055358	0	lncRNA	48612-2_{3001..4994}	"gi|385275070|ref|NR_047658.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385275070|ref|NR_047658.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 7, non-coding RNA"	Chr2	 97261892	 97263885	-	55683	NR_047658.1	NA	NA	NA	NA	NA	inter
CUST_45991_PI429285431	0.88791746	A	0.9025495	A	0.989909100969147	0	lncRNA	50280-1_{1..752}	"gi|310122846|ref|XR_109085.1| PREDICTED: Homo sapiens uncharacterized LOC100506226, transcript variant 2 (LOC100506226), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310122846|ref|XR_109085.1| PREDICTED: Homo sapiens uncharacterized LOC100506226, transcript variant 2 (LOC100506226), misc_RNA"	Chr12	 10928474	 10929225	+	100506226	XR_109085.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0014269	0.9040209	A	0.9258719	A	0.984968164100609	0	lncRNA	ENST00000527966	XR_109056	XR_109056	NA	NA	APBB1	"amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)"	ENST00000527966	THC2626012	GO:0005515|GO:0030308|GO:0005886|GO:0045202|GO:0005634|GO:0007409|GO:0030426|GO:0042393|GO:0005737|GO:0001540|GO:0007050|GO:0050760|GO:0070064|GO:0006355|GO:0043065|GO:0006974|GO:0030027|GO:0045749|GO:0007165|GO:0016607|GO:0043967|GO:0003682|GO:0045893|GO:0016568|GO:0008134	"PREDICTED: Homo sapiens hypothetical LOC100506137 (LOC100506137), miscRNA [XR_109056]"	chr11:6418609-6418550	hs|11p15.4	Agilent_HUMAN_G3V2	ENST00000527966	ENST00000527966	chr11	  6418550	  6418609	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21722_PI429285431	8.403606	P	8.26986	P	1.09713875900037	0	lncRNA	23332-1_{1..752}	lnc-CPT2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPT2-6:1	chr1	 53773015	 53773766	+	lnc-CPT2-6	lnc-CPT2-6:1	ENSG00000232762.1	RP4-784A16.4	LRP8	NA	chr1:53763015-53783134	inner
LNCA_21_P0003935	0.90224046	A	0.92266834	A	0.985940247205966	0	lncRNA	BC032910	NA	BC032910	NA	Hs.382230	XLOC_004842	NA	NA	THC2602463	NA	"BROAD Institute lincRNA (XLOC_004842), lincRNA [TCONS_00009279]"	chr5:60920443-60920384	hs|5q12.1	Agilent_HUMAN_G3V2	BC032910	BC032910	chr5	 60920384	 60920443	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36739_PI429285431	0.92010504	A	0.9243443	A	0.99706588184657	0	lncRNA	37914-1_{1..3000}	n345221|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_770|NULL|-1.3258900|-0.3596563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345221|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_770|NULL|-1.3258900|-0.3596563	chr13	 41428796	 41431795	-	NA	NA	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-16.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20"	NA	inter
LNCA_21_P0008673	0.89997435	A	0.91900665	A	0.986894450400181	0	lncRNA	TCONS_00023505	NA	NA	NA	NA	XLOC_011350	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011350), lincRNA [TCONS_00023505]"	chr15:91384430-91384489	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00023505	TCONS_00023505	chr15	 91384430	 91384489	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14720_PI429285431	2.157609	A	0.97830003	A	2.26468276056454	0	lncRNA	16384-1_{1..726}	lnc-TRMT61B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TRMT61B-1:1	chr2	 28958893	 28959618	-	lnc-TRMT61B-1	lnc-TRMT61B-1:1	XLOC_002035	linc-RBKS-1	NA	NA	NA	inter
CUST_29208_PI429285431	5.125657	P	4.677048	P	1.36472379956822	0	lncRNA	30955-1_{1..1318}	n326728|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000002185|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000002185|-0.8153950|-0.1260461	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326728|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000002185|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000002185|-0.8153950|-0.1260461	chr1	  2471218	  2472535	-	NA	NA	NA	NA	HES5	NA	chr1:2461218-2461684	inter
CUST_31590_PI429285431	2.7488112	A	3.293836	A	0.685379620678585	0	lncRNA	33347-1_{1..2601}	n338096|AK094929|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|483|NULL|-1.1349700|-0.3369845	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338096|AK094929|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|483|NULL|-1.1349700|-0.3369845	chr15	 88402983	 88405583	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001748	0.88867944	A	0.902913	A	0.990182556861222	0	lncRNA	TCONS_00002525	NA	NA	NA	NA	XLOC_001108	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001108), lincRNA [TCONS_00002525]"	chr1:179895744-179895685	hs|1q25.2	Agilent_HUMAN_G3V2	TCONS_00002525	TCONS_00002525	chr1	179895685	179895744	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25776_PI429285431	2.7943008	A	2.7125552	A	1.05829776174617	0	lncRNA	27301-1_{1..748}	lnc-UAP1L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UAP1L1-1:1	chr9	139958896	139959643	+	lnc-UAP1L1-1	lnc-UAP1L1-1:1	ENSG00000231864.1	RP11-229P13.23	C9orf140	NA	chr9:139956579-139965028	inner
CUST_31899_PI429285431	1.9967599	A	1.1844771	A	1.75598777375983	0	lncRNA	33630-1_{1..713}	n338453|AF086093|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|850|NULL|-1.0800300|-0.3156824	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338453|AF086093|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|850|NULL|-1.0800300|-0.3156824	chr14	 91724642	 91725354	+	NA	NA	NA	NA	GPR68	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60chr14:91714642-91720224"	NA	inter
LNCA_21_P0003341	0.885564	A	0.89793265	A	0.991463351017548	0	lncRNA	ENST00000499715	NA	NA	NA	NA	XLOC_003473	NA	ENST00000499715	NA	NA	"BROAD Institute lincRNA (XLOC_003473), lincRNA [TCONS_00007492]"	chr4:23769980-23770039	hs|4p15.2	Agilent_HUMAN_G3V2	ENST00000499715	ENST00000499715	chr4	 23769980	 23770039	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006079	8.426921	P	8.542355	P	0.923104575213661	0	lncRNA	ENST00000432148	NA	NA	NA	NA	XLOC_007722	NA	ENST00000432148	THC2698682	NA	"BROAD Institute lincRNA (XLOC_007722), lincRNA [TCONS_00015828]"	chr9:71160428-71158472	hs|9q21.11	Agilent_HUMAN_G3V2	ENST00000432148	ENST00000432148	chr9	 71158472	 71160428	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10111_PI429285431	2.3664238	A	3.2492478	P	0.542304858272965	0	lncRNA	11636-1_{1..638}	lnc-AL137145.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AL137145.1-3:1	chr10	  6663672	  6664309	+	lnc-AL137145.1-3	lnc-AL137145.1-3:1	XLOC_008371	linc-ITIH2-9	NA	NA	NA	inter
CUST_32806_PI429285431	4.3537617	P	1.9809297	A	5.17956880610764	0	lncRNA	34441-1_{1..2631}	n339452|AK095905|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1890|NULL|-1.2556800|-0.4501562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339452|AK095905|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1890|NULL|-1.2556800|-0.4501562	chr21	 28290241	 28292871	-	NA	NA	NA	NA	ADAMTS5	NA	chr21:28290231-28302870	inner
CUST_32743_PI429285431	4.3148627	P	4.4250913	P	0.926441252450965	0	lncRNA	34380-3_{6001..7909}	n339368|D87433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1800|NULL|17.7564000|-0.0912541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339368|D87433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1800|NULL|17.7564000|-0.0912541	chr3	 52535370	 52537278	+	NA	NA	NA	NA	NT5DC2	NA	chr3:52558385-52568509	inner
CUST_26765_PI429285431	7.4196186	P	7.4054737	P	1.00985271910764	0	lncRNA	28264-1_{1..772}	n323816|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058082|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058082|0.2168970|-0.1826234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323816|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058082|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058082|0.2168970|-0.1826234	chrX	119028702	119029473	-	NA	NA	NA	NA	AKAP14	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chrX:119029936-119043529"	NA	inner
CUST_14893_PI429285431	1.3194718	A	1.4929361	A	0.886710890625673	0	lncRNA	16557-1_{1..436}	lnc-ZNF674-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF674-1:2	chrX	 46186986	 46187421	-	lnc-ZNF674-1	lnc-ZNF674-1:2	XLOC_008151	linc-CXorf36-3	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-32.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50"	NA	inter
CUST_7950_PI429285431	4.2609754	P	5.032833	P	0.58566289511982	0	lncRNA	9562-1_{1..346}	lnc-FAM120B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM120B-2:2	chr6	170588297	170588642	+	lnc-FAM120B-2	lnc-FAM120B-2:2	ENSG00000227508	XLOC_005564	DLL1	NA	chr6:170591294-170598557	inter
CUST_49349_PI429285431	2.82465	A	2.0078979	A	1.76143605260234	0	lncRNA	53162-1_{1..1162}	hg19_lincRNAsTranscripts_TCONS_l2_00022370 range=chr5:74931619-74963296 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022370 range=chr5:74931619-74963296 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 74931619	 74932780	+	NA	NA	NA	NA	POC5	NA	chr5:74970023-74973296	inner
CUST_31138_PI429285431	7.7325554	P	8.175216	P	0.735776447033774	0	lncRNA	32933-1_{1..467}	n337465|EF036502|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394755|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394755|2.4451100|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337465|EF036502|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394755|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394755|2.4451100|-1.0000000	chr16	 67876585	 67877051	+	NA	NA	NA	NA	NUTF2	NA	chr16:67880819-67887052	inner
LNCA_33_P3304486	0.8760105	A	0.877316	A	0.999095505657613	0	lncRNA	XR_110853	XR_110853	XR_110853	100130249	Hs.617350	PP2672	uncharacterized LOC100130249	NA	NP423014	NA	"PREDICTED: Homo sapiens hypothetical LOC100130249 (PP2672), miscRNA [XR_110853]"	chr1:234895110-234895051	hs|1q42.3	Agilent_HUMAN_G3V2	XR_110853	XR_110853	chr1	234895051	234895110	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_250_PI429285431	0.89226776	A	0.89050335	A	1.00122374398121	0	lncRNA	242-1_{1..623}	"transcript_id ""ENST00000449812.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449812.2"" | genecode_v17"	chr1	 59522315	 59522937	+	ENSG00000237352.2	ENST00000449812.2	RP11-145M4.3	RP11-145M4.3-001	NA	NA	NA	inter
CUST_34211_PI429285431	7.3714137	P	7.68094	P	0.80690665854491	0	lncRNA	35724-1_{1..444}	n341070|BC038545|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3536|NULL|-0.7384570|-0.2321414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341070|BC038545|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3536|NULL|-0.7384570|-0.2321414	chr11	 76336941	 76337384	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31005_PI429285431	1.2596188	A	1.503161	A	0.844668877577631	0	lncRNA	32793-1_{1..231}	n337169|AM072428|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000385522|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000385522|-1.1187600|-0.2095420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337169|AM072428|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000385522|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000385522|-1.1187600|-0.2095420	chrX	  7066048	  7066278	+	NA	NA	NA	NA	STS	NA	chrX:7137472-7181264	inner
CUST_51844_PI429285431	3.6774762	P	3.536458	P	1.10268307363545	0	lncRNA	55399-1_{1..364}	hg19_lincRNAsTranscripts_TCONS_l2_00012563 range=chr19:43158078-43173162 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012563 range=chr19:43158078-43173162 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 43158078	 43158441	+	NA	NA	NA	NA	PSG3	NA	chr19:43174130-43183162	inter
CUST_36014_PI429285431	0.9264951	A	1.4290096	A	0.705875425024156	0	lncRNA	37347-1_{1..426}	n344625|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_173|NULL|-1.3251500|-0.2490780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344625|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_173|NULL|-1.3251500|-0.2490780	chr5	 25433944	 25434369	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-32.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_7526_PI429285431	0.88669074	A	0.88077986	A	1.00410551443532	0	lncRNA	9165-1_{1..3000}	lnc-NUCB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUCB2-1:1	chr11	 17149161	 17152160	+	lnc-NUCB2-1	lnc-NUCB2-1:1	ENSG00000245502	ENST00000500523	PIK3C2A	"hg19_refFlat_PIK3C2A:range=chr11:17111285-171912885'pad=0,hg19_refFlat_PIK3C2A:range=chr11:17111285-171912885'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20chr11:17139161-17161081"	NA	inner
CUST_34353_PI429285431	6.159874	P	5.9192657	P	1.18149072185811	0	lncRNA	35842-2_{3001..4319}	n341222|AK126467|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3690|NULL|-1.1821400|-0.3540762	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341222|AK126467|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3690|NULL|-1.1821400|-0.3540762	chr7	 31826140	 31827458	-	NA	NA	NA	NA	PDE1C	NA	chr7:31813140-31837480	inner
CUST_28153_PI429285431	0.88517064	A	0.8903378	A	0.996424803901782	0	lncRNA	29778-1_{1..478}	n325429|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323600|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323600|0.2535710|-0.2405720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325429|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323600|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323600|0.2535710|-0.2405720	chr2	 12164160	 12164637	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39776_PI429285431	8.158135	P	8.657808	P	0.707267071557957	0	lncRNA	40691-2_{3001..4981}	n405979|NR_003262|lncRNA|Homosapiens||RefGeneNoncode|NR_003262||4.3604700|-0.2174983	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n405979|NR_003262|lncRNA|Homosapiens||RefGeneNoncode|NR_003262||4.3604700|-0.2174983	chr7	 76102336	 76104316	-	NA	NA	NA	NA	DTX2	"hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.61;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80chr7:76090972-76114317"	NA	inter
CUST_34179_PI429285431	0.878217	A	0.87893146	A	0.999504896669501	0	lncRNA	35695-1_{1..803}	n341027|CR604021|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3493|NULL|-1.3686200|-0.3547229	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341027|CR604021|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3493|NULL|-1.3686200|-0.3547229	chr11	 46671289	 46672091	-	NA	NA	NA	NA	ATG13	"hg19_refFlat_ATG13:range=chr11:46667507-466938825'pad=0,hg19_refFlat_ATG13:range=chr11:46667507-466938825'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ATG13:range=chr11:46665842-466938825'pad=0,hg19_refFlat_ATG13:range=chr11:46665842-466938825'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50chr11:46661289-46682092"	NA	inner
CUST_20711_PI429285431	0.88694525	A	0.87979615	A	1.0049676767023	0	lncRNA	22346-1_{1..1026}	lnc-ATP6V1B2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATP6V1B2-2:1	chr8	 19975146	 19976171	+	lnc-ATP6V1B2-2	lnc-ATP6V1B2-2:1	ENSG00000253775.1	AC100802.3	NA	NA	NA	inter
CUST_13316_PI429285431	3.8664713	P	3.773683	A	1.06642928230808	0	lncRNA	14950-1_{1..376}	lnc-RALGAPA1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RALGAPA1-3:1	chr14	 36517936	 36518311	-	lnc-RALGAPA1-3	lnc-RALGAPA1-3:1	XLOC_010995	linc-RALGAPA1-1	NA	NA	NA	inter
CUST_17150_PI429285431	4.1907506	P	4.0809813	P	1.07905567193516	0	lncRNA	18859-1_{1..641}	lnc-EIF2B5-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2B5-2:5	chr3	184446639	184447279	+	lnc-EIF2B5-2	lnc-EIF2B5-2:5	XLOC_002952	linc-VPS8-2	NA	NA	NA	inter
CUST_40946_PI429285431	0.88902104	A	0.8966837	A	0.994702729111583	0	lncRNA	41625-1_{1..548}	n410922|NR_038384|lncRNA|Homosapiens||RefGeneNoncode|NR_038384||-1.2745100|-0.2969490	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n410922|NR_038384|lncRNA|Homosapiens||RefGeneNoncode|NR_038384||-1.2745100|-0.2969490	chr6	100441913	100442460	+	NA	NA	NA	NA	MCHR2	NA	chr6:100431913-100442114	inner
CUST_24138_PI429285431	1.0360456	A	1.2976321	A	0.834170096361084	0	lncRNA	25690-1_{1..592}	lnc-TRIM36-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM36-4:2	chr5	114004040	114004631	-	lnc-TRIM36-4	lnc-TRIM36-4:2	ENSG00000246316.3	RP11-492A10.1	NA	NA	NA	inter
CUST_15887_PI429285431	0.91519964	A	0.9170182	A	0.998740264397218	0	lncRNA	17578-1_{1..1153}	lnc-ABT1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABT1-3:1	chr6	 26687347	 26688499	+	lnc-ABT1-3	lnc-ABT1-3:1	XLOC_005214	linc-HIST1H2AG-4	NA	NA	NA	inter
LNCA_21_P0002381	0.9048198	A	0.9292746	A	0.983192080414057	0	lncRNA	TCONS_00004098	NA	NA	NA	NA	XLOC_001943	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001943), lincRNA [TCONS_00004098]"	chr2:2616975-2614076	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00004098	TCONS_00004098	chr2	  2614076	  2616975	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46720_PI429285431	8.478883	P	8.439454	P	1.02770699304278	0	lncRNA	50876-1_{1..2659}	"gi|259155320|ref|NR_028502.1| Homo sapiens MIR22 host gene (non-protein coding) (MIR22HG), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|259155320|ref|NR_028502.1| Homo sapiens MIR22 host gene (non-protein coding) (MIR22HG), transcript variant 1, non-coding RNA"	Chr17	  1614798	  1617456	-	84981	NR_028502.1	NA	NA	NA	NA	NA	inter
CUST_14989_PI429285431	1.393998	A	1.4933515	A	0.933451195652239	0	lncRNA	16652-1_{1..595}	lnc-SCUBE1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCUBE1-1:1	chr22	 43786942	 43787536	-	lnc-SCUBE1-1	lnc-SCUBE1-1:1	XLOC_014390	linc-SCUBE1	NA	NA	NA	inter
CUST_8403_PI429285431	4.9712286	P	4.767064	P	1.15201907104145	0	lncRNA	9980-1_{1..1812}	lnc-ZNF720-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ZNF720-1:1	chr16	 31718212	 31720023	+	lnc-ZNF720-1	lnc-ZNF720-1:1	ENSG00000131797	KIAA0664L3	ZNF720	NA	chr16:31724550-31728758	inter
CUST_11467_PI429285431	6.6572657	P	6.075639	P	1.49653570531883	0	lncRNA	13033-1_{1..841}	lnc-CRIPAK-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRIPAK-1:7	chr4	  1553473	  1554313	+	lnc-CRIPAK-1	lnc-CRIPAK-1:7	XLOC_003422	linc-TACC3	NA	NA	NA	inter
CUST_32236_PI429285431	5.965573	P	5.8301473	P	1.09841687886764	0	lncRNA	33928-1_{1..650}	n338809|BC031947|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1232|NULL|1.4301000|-0.1492374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338809|BC031947|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1232|NULL|1.4301000|-0.1492374	chr2	 44223123	 44223772	+	NA	NA	NA	NA	LRPPRC	NA	chr2:44213123-44223144	inner
CUST_51727_PI429285431	1.4576266	A	0.9428632	A	1.42875980588575	0	lncRNA	55282-1_{1..1362}	hg19_lincRNAsTranscripts_TCONS_l2_00011786 range=chr18:14225653-14244742 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011786 range=chr18:14225653-14244742 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr18	 14225653	 14227014	+	NA	NA	NA	NA	LOC100652806	NA	chr18:14234721-14249475	inter
CUST_48642_PI429285431	4.249022	P	4.1562743	P	1.06639927151688	0	lncRNA	52489-1_{1..1560}	hg19_lincRNAsTranscripts_TCONS_l2_00014683 range=chr2:91804903-91848003 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014683 range=chr2:91804903-91848003 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 91804903	 91806462	-	NA	NA	NA	NA	LOC100506191	NA	chr2:91832852-91835376	inter
CUST_28224_PI429285431	1.3554528	A	1.3598522	A	0.996955213088182	0	lncRNA	29856-2_{3001..4775}	n325510|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322421|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322421|1.0891500|-0.3189070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325510|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322421|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322421|1.0891500|-0.3189070	chr2	   190568	   192342	+	NA	NA	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40"	NA	inter
LNCA_21_P0013313	2.354195	A	1.0834994	A	2.41277870389704	0	lncRNA	TCONS_l2_00026607	NA	NA	NA	NA	XLOC_l2_013857	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013857), lincRNA [TCONS_l2_00026607]"	chr7:62701988-62697656	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00026607	TCONS_l2_00026607	chr7	 62697656	 62701988	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25881_PI429285431	6.2773805	P	6.0383716	P	1.18018162386587	0	lncRNA	27401-1_{1..490}	lnc-ZNF362-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF362-2:1	chr1	 33828667	 33829156	+	lnc-ZNF362-2	lnc-ZNF362-2:1	ENSG00000233246.1	RP11-415J8.5	PHC2	NA	chr1:33818667-33838846	inner
CUST_25293_PI429285431	0.8905779	A	0.89804494	A	0.994837613432309	0	lncRNA	26824-1_{1..578}	lnc-RNASE12.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNASE12.1-1:1	chr14	 21077703	 21078280	-	lnc-RNASE12.1-1	lnc-RNASE12.1-1:1	ENSG00000259060.1	AL163195.3	NA	NA	NA	inter
CUST_18741_PI429285431	5.7088647	P	6.018359	P	0.806924556505815	0	lncRNA	20438-1_{1..510}	lnc-FAM160A1-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM160A1-6:2	chr4	153022636	153023145	+	lnc-FAM160A1-6	lnc-FAM160A1-6:2	ENSG00000245954	RP11-18H21.1	NA	NA	NA	inter
CUST_19212_PI429285431	3.2957716	A	2.3943794	A	1.86786760496547	0	lncRNA	20882-1_{1..365}	lnc-FAM198B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM198B-1:1	chr4	159121476	159121840	-	lnc-FAM198B-1	lnc-FAM198B-1:1	ENSG00000250604.1	RP11-597D13.8	TMEM144	NA	chr4:159131401-159131594	inter
CUST_32673_PI429285431	3.0031998	A	2.980268	A	1.01602211181323	0	lncRNA	34324-1_{1..2496}	n339300|BC040306|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1732|NULL|-0.8810010|-0.3728283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339300|BC040306|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1732|NULL|-0.8810010|-0.3728283	chr16	 78931061	 78933556	+	NA	NA	NA	NA	WWOX	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-21.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30chr16:78921061-78943540"	NA	inner
CUST_37937_PI429285431	0.8921375	A	1.2918719	A	0.757997817726405	0	lncRNA	39027-1_{1..2926}	n346483|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2033|NULL|-1.3548500|-0.1986347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n346483|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2033|NULL|-1.3548500|-0.1986347	chr12	  6258865	  6261790	-	NA	NA	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90"	NA	inter
CUST_7963_PI429285431	4.6502	P	4.505805	P	1.10526705791106	0	lncRNA	9575-1_{1..996}	lnc-WDR74-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-WDR74-1:5	chr11	 62622896	 62623891	-	lnc-WDR74-1	lnc-WDR74-1:5	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62633284	inter
CUST_4217_PI429285431	0.89411557	A	0.89932585	A	0.996395022697688	0	lncRNA	4176-1_{1..562}	"transcript_id ""ENST00000546558.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546558.1"" | genecode_v17"	chr12	 30473767	 30474328	+	ENSG00000257932.1	ENST00000546558.1	RP11-155I9.1	RP11-155I9.1-001	NA	NA	NA	inter
LNCA_21_P0014720	1.8306379	A	0.9073249	A	1.89646533339213	0	lncRNA	XR_112629	XR_112629	XR_112629	NA	Hs.397553	LOC100508631	uncharacterized LOC100508631	NA	THC2608522	NA	"PREDICTED: Homo sapiens hypothetical LOC100508631 (LOC100508631), miscRNA [XR_112629]"	chr4:37022269-37022328	hs|4p14	Agilent_HUMAN_G3V2	XR_112629	XR_112629	chr4	 37022269	 37022328	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31118_PI429285431	5.799648	P	5.4182405	P	1.30261207012891	0	lncRNA	32913-1_{1..502}	n337412|DQ786261|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393314_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393314_04|-1.0716100|-0.5167839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337412|DQ786261|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393314_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393314_04|-1.0716100|-0.5167839	chr2	 88038282	 88038783	+	NA	NA	NA	NA	LOC730268	NA	chr2:88028282-88047142	inter
CUST_35277_PI429285431	1.2041314	A	0.9145468	A	1.22228828947176	0	lncRNA	36677-1_{1..1959}	n342286|BC069165|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4778|NULL|-0.4522630|-0.1976982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342286|BC069165|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4778|NULL|-0.4522630|-0.1976982	chr1	111059838	111061796	+	NA	NA	NA	NA	KCNA10	"hg19_refFlat_KCNA10:range=chr1:111059874-1110614095'pad=0,hg19_refFlat_KCNA10:range=chr1:111059874-1110614095'pad=0 3'pad=0 strand=- repeatMasking=none,-97.80chr1:111059839-111061797"	NA	inner
CUST_19137_PI429285431	0.88707745	A	0.8916178	A	0.996857816223879	0	lncRNA	20813-5_{12001..15000}	lnc-MYB-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYB-6:1	NA	    12000	    14999	NA	NA	NA	NA	NA	NA	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00"	NA	Unknown
CUST_49656_PI429285431	0.8908914	A	0.9015112	A	0.992665941998606	0	lncRNA	53438-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026845 range=chr7:112586295-112635753 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026845 range=chr7:112586295-112635753 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	112586295	112589294	-	NA	NA	NA	NA	C7orf60	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90chr7:112576295-112579932"	NA	inter
CUST_8641_PI429285431	4.811021	P	3.984287	P	1.77366555675417	0	lncRNA	10194-1_{1..784}	lnc-WDR74-1:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR74-1:15	chr11	 62622896	 62623679	-	lnc-WDR74-1	lnc-WDR74-1:15	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62632960	inter
CUST_21523_PI429285431	0.88403064	A	0.885288	A	0.99912884413784	0	lncRNA	23141-1_{1..573}	lnc-NBPF9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NBPF9-1:2	chr1	144865739	144866311	+	lnc-NBPF9-1	lnc-NBPF9-1:2	ENSG00000255148.1	RP4-791M13.4	PDE4DIP	NA	chr1:144855739-144875740	inner
CUST_49829_PI429285431	0.87367773	A	0.8797596	A	0.995793242256282	0	lncRNA	53587-1_{1..601}	hg19_lincRNAsTranscripts_TCONS_l2_00025972 range=chr7:65156537-65160173 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025972 range=chr7:65156537-65160173 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 65156537	 65157137	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38791_PI429285431	0.8775716	A	0.8828978	A	0.996314965951385	0	lncRNA	39786-1_{1..2216}	n384480|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hsl.1||-0.9024690|-0.4013622	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384480|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hsl.1||-0.9024690|-0.4013622	chr4	 90162420	 90164635	-	NA	NA	NA	NA	GPRIN3	NA	chr4:90165429-90174636	inter
CUST_1576_PI429285431	0.8984166	A	0.9098135	A	0.99213139175512	0	lncRNA	1565-1_{1..304}	"transcript_id ""ENST00000602704.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602704.1"" | genecode_v17"	chr3	179521851	179522154	+	ENSG00000270178.1	ENST00000602704.1	RP11-494H4.3	RP11-494H4.3-001	PEX5L	NA	chr3:179518050-179532154	inner
CUST_8446_PI429285431	3.2206676	P	2.0023556	A	2.32674321464537	0	lncRNA	10015-1_{1..2484}	lnc-DUT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DUT-1:1	chr15	 48622032	 48624515	+	lnc-DUT-1	lnc-DUT-1:1	ENSG00000245373	XLOC_011240	DUT	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20chr15:48623621-48632979"	NA	inter
CUST_52024_PI429285431	0.8882022	A	0.89001405	A	0.998744909566549	0	lncRNA	55554-2_{3001..4754}	hg19_lincRNAsTranscripts_TCONS_l2_00017147 range=chr21:16189151-16230015 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017147 range=chr21:16189151-16230015 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 16192151	 16193904	-	NA	NA	NA	NA	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-13.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.01;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80"	NA	inter
CUST_34820_PI429285431	1.4458853	A	0.9493842	A	1.41078789289105	0	lncRNA	36252-1_{1..1448}	n341727|BC064349|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4200|NULL|-1.1922400|-0.4042635	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n341727|BC064349|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4200|NULL|-1.1922400|-0.4042635	chr9	 96938739	 96940186	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009042	0.87561154	A	0.87884676	A	0.997760028866483	0	lncRNA	TCONS_00024692	NA	NA	NA	NA	XLOC_011972	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011972), lincRNA [TCONS_00024692]"	chr16:59475957-59475898	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024692	TCONS_00024692	chr16	 59475898	 59475957	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12505_PI429285431	0.92286634	A	1.3792262	A	0.728822872111945	0	lncRNA	14116-1_{1..756}	lnc-APBB1IP-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APBB1IP-1:4	chr10	 26881779	 26882534	+	lnc-APBB1IP-1	lnc-APBB1IP-1:4	XLOC_008419	linc-PDSS1-3	NA	"hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20"	NA	inter
LNCA_21_P0008884	6.4473476	P	5.703749	P	1.67434705783047	0	lncRNA	FJ466686	NA	FJ466686	NA	NA	CRNDE	colorectal neoplasia differentially expressed (non-protein coding)	NA	THC2707285	NA	"BROAD Institute lincRNA (XLOC_011950), lincRNA [TCONS_00024663]"	chr16:54957531-54954215	hs|16q12.2	Agilent_HUMAN_G3V2	FJ466686	FJ466686	chr16	 54954215	 54957531	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26042_PI429285431	2.967163	A	2.2997744	A	1.58819559584631	0	lncRNA	27557-1_{1..294}	lnc-AP3M1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP3M1-3:1	chr10	 76287524	 76287817	-	lnc-AP3M1-3	lnc-AP3M1-3:1	ENSG00000232342.1	RP11-46O21.2	ADK	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_MRPL35:range=chr2:86426614-864377915'pad=0,hg19_refFlat_MRPL35:range=chr2:86426614-864377915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MRPL35:range=chr2:86426614-864395495'pad=0,hg19_refFlat_MRPL35:range=chr2:86426614-864395495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80chr10:76277524-76297606"	NA	inner
CUST_797_PI429285431	1.1809059	A	0.8779112	A	1.2337026375724	0	lncRNA	790-1_{1..1498}	"transcript_id ""ENST00000447260.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447260.1"" | genecode_v17"	chr2	 21059531	 21061028	+	ENSG00000236436.1	ENST00000447260.1	AC012361.1	AC012361.1-001	NA	NA	NA	inter
LNCA_21_P0007828	0.87566066	A	0.8772938	A	0.998868634091072	0	lncRNA	TCONS_00021091	NA	NA	NA	NA	XLOC_009696	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009696), lincRNA [TCONS_00021091]"	chr12:29194914-29195207	hs|12p11.22	Agilent_HUMAN_G3V2	TCONS_00021091	TCONS_00021091	chr12	 29194914	 29195207	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45213_PI429285431	1.2363095	A	0.8755985	A	1.28405856121028	0	lncRNA	49675-2_{3001..4372}	"gi|339895840|ref|NR_040434.1| Homo sapiens uncharacterized LOC100505676 (LOC100505676), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|339895840|ref|NR_040434.1| Homo sapiens uncharacterized LOC100505676 (LOC100505676), non-coding RNA"	Chr8	 67334822	 67336193	-	100505676	NR_040434.1	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_30907_PI429285431	8.152399	P	7.9944396	P	1.11570792388121	0	lncRNA	32695-1_{1..420}	n336942|BC098160|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000335805|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000335805|-1.0846900|-0.1843933	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336942|BC098160|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000335805|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000335805|-1.0846900|-0.1843933	chr14	107154758	107155177	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18489_PI429285431	3.3846974	P	3.5742848	P	0.876856459854158	0	lncRNA	20207-1_{1..659}	lnc-TPPP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TPPP2-1:2	chr14	 21485762	 21486420	+	lnc-TPPP2-1	lnc-TPPP2-1:2	ENSG00000258575	RP11-998D10.2	NDRG2	"hg19_refFlat_NDRG2:range=chr14:21485755-214914745'pad=0,hg19_refFlat_NDRG2:range=chr14:21485755-214914745'pad=0 3'pad=0 strand=- repeatMasking=none,-97.10chr14:21484922-21493935"	NA	inner
CUST_20755_PI429285431	0.89257014	A	0.905419	A	0.99113339120421	0	lncRNA	22389-1_{1..3000}	lnc-CAPN3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CAPN3-1:3	chr15	 42703945	 42706944	+	lnc-CAPN3-1	lnc-CAPN3-1:3	ENSG00000258461.1	RP11-164J13.1	ZFP106	NA	chr15:42705021-42714515	inner
CUST_1089_PI429285431	4.4563756	P	3.6553771	P	1.74230657277124	0	lncRNA	1078-1_{1..837}	"transcript_id ""ENST00000597655.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597655.1"" | genecode_v17"	chr2	145425534	145426370	+	ENSG00000226674.3	ENST00000597655.1	AC074093.1	AC074093.1-031	NA	NA	NA	inter
CUST_2897_PI429285431	4.3760366	P	4.9980288	P	0.649773044247381	0	lncRNA	2878-1_{1..673}	"transcript_id ""ENST00000470135.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000470135.1"" | genecode_v17"	chr7	106415522	106416194	+	ENSG00000228742.5	ENST00000470135.1	RP5-884M6.1	RP5-884M6.1-001	NA	NA	NA	inter
CUST_24467_PI429285431	0.91309494	A	1.0389922	A	0.916433905221953	0	lncRNA	26020-1_{1..999}	lnc-OR4N4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR4N4-1:1	chr15	 22332388	 22333386	+	lnc-OR4N4-1	lnc-OR4N4-1:1	ENSG00000259176.1	RP11-69H14.6	OR4M2	NA	chr15:22322388-22342692	inter
CUST_7981_PI429285431	3.7618713	P	4.117964	P	0.781277677762569	0	lncRNA	9592-2_{3001..3258}	lnc-FBXO25-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXO25-2:1	chr8	   612383	   612640	+	lnc-FBXO25-2	lnc-FBXO25-2:1	ENSG00000244964	ENST00000499740	ERICH1	NA	chr8:614200-621619	inter
LNCA_21_P0008013	6.0407305	P	6.1272006	P	0.941824331863235	0	lncRNA	ENST00000434117	NA	NA	NA	NA	XLOC_010686	NA	ENST00000434117	NA	NA	"BROAD Institute lincRNA (XLOC_010686), lincRNA [TCONS_00021684]"	chr13:90204421-90204362	hs|13q31.3	Agilent_HUMAN_G3V2	ENST00000434117	ENST00000434117	chr13	 90204362	 90204421	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011093	10.027765	P	10.226129	P	0.871538317819192	0	lncRNA	TCONS_l2_00006194	NA	NA	NA	NA	XLOC_l2_003335	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003335), lincRNA [TCONS_l2_00006194]"	chr12:31960075-31959290	hs|12p11.21	Agilent_HUMAN_G3V2	TCONS_l2_00006194	TCONS_l2_00006194	chr12	 31959290	 31960075	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005232	3.4233038	P	3.266169	P	1.115070401846	0	lncRNA	ENST00000440455	NA	NA	NA	NA	XLOC_006093	NA	ENST00000440455	NA	NA	"BROAD Institute lincRNA (XLOC_006093), lincRNA [TCONS_00013009]"	chr7:49294350-49294409	hs|7p12.2	Agilent_HUMAN_G3V2	ENST00000440455	ENST00000440455	chr7	 49294350	 49294409	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5869_PI429285431	6.4316616	P	6.491537	P	0.959346970840973	0	lncRNA	5798-1_{1..1028}	"transcript_id ""ENST00000591013.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591013.1"" | genecode_v17"	chr17	 43025280	 43026307	+	ENSG00000267334.1	ENST00000591013.1	CTD-2534I21.8	CTD-2534I21.8-001	KIF18B	NA	chr17:43015280-43025082	inter
CUST_20364_PI429285431	0.9026443	A	0.89402115	A	1.00599501068747	0	lncRNA	22005-1_{1..829}	lnc-ARID2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARID2-3:2	chr12	 46849614	 46850442	+	lnc-ARID2-3	lnc-ARID2-3:2	ENSG00000257261.1	RP11-96H19.1	NA	NA	NA	inter
CUST_37616_PI429285431	0.901417	A	0.89195746	A	1.00657839670369	0	lncRNA	38714-1_{1..513}	n346095|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1645|NULL|-1.7217900|-0.1673912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346095|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1645|NULL|-1.7217900|-0.1673912	chr9	 22674480	 22674992	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27384_PI429285431	0.89048165	A	0.9031389	A	0.991265036268261	0	lncRNA	28946-1_{1..799}	n324546|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257578|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257578|-1.3257500|-0.4213634	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324546|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257578|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257578|-1.3257500|-0.4213634	chr6	 30915281	 30916079	-	NA	NA	NA	NA	MUC21	NA	chr6:30929178-30933915	inner
CUST_47807_PI429285431	12.328062	P	12.532003	P	0.86817573151513	0	lncRNA	51726-1_{1..3000}	"gi|374429547|ref|NR_046235.1| Homo sapiens RNA, 45S pre-ribosomal 5 (RNA45S5), ribosomal RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ensembl.GRCh37.72,ncbi,"	">gi|374429547|ref|NR_046235.1| Homo sapiens RNA, 45S pre-ribosomal 5 (RNA45S5), ribosomal RNA"	NA	NA	NA	NA	NA	NR_046235.1	NA	NA	NA	NA	NA	Unknown
CUST_1311_PI429285431	0.8971829	A	0.8885585	A	1.0059958823161	0	lncRNA	1301-1_{1..3000}	"transcript_id ""ENST00000566553.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566553.1"" | genecode_v17"	chr3	 14840838	 14843837	-	ENSG00000260902.1	ENST00000566553.1	RP11-95M5.1	RP11-95M5.1-001	FGD5	NA	chr3:14860469-14862921	inter
CUST_30020_PI429285431	6.877418	P	7.1156044	P	0.847810418216904	0	lncRNA	31788-1_{1..373}	n334458|U14413|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218256|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218256|1.5191300|-0.1877068	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334458|U14413|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218256|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218256|1.5191300|-0.1877068	chr1	201039388	201039760	-	NA	NA	NA	NA	CACNA1S	NA	chr1:201029388-201053701	inner
LNCA_21_P0001913	0.9000649	A	1.3714719	A	0.72126083918051	0	lncRNA	ENST00000430692	NA	NA	NA	NA	XLOC_001657	NA	ENST00000430692	NA	NA	"BROAD Institute lincRNA (XLOC_001657), lincRNA [TCONS_00002999]"	chr2:126523259-126523318	hs|2q14.3	Agilent_HUMAN_G3V2	ENST00000430692	ENST00000430692	chr2	126523259	126523318	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27076_PI429285431	0.88851017	A	0.9021459	A	0.990592957873032	0	lncRNA	28608-1_{1..1007}	n324185|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322756|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322756|-1.3905600|-0.3651576	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324185|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322756|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322756|-1.3905600|-0.3651576	chr7	152727937	152728943	-	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30"	NA	inter
CUST_36217_PI429285431	1.8301184	A	1.9863744	A	0.897350805516708	0	lncRNA	37471-1_{1..3000}	n344761|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_310|NULL|-1.6041800|-0.4169398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344761|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_310|NULL|-1.6041800|-0.4169398	chrX	102063370	102066369	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007458	2.6622493	A	2.759606	A	0.934744057823694	0	lncRNA	TCONS_00020040	NA	NA	NA	NA	XLOC_009372	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009372), lincRNA [TCONS_00020040]"	chr11:10918038-10917979	hs|11p15.3	Agilent_HUMAN_G3V2	TCONS_00020040	TCONS_00020040	chr11	 10917979	 10918038	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001812	0.905386	A	0.92922604	A	0.98361112667367	0	lncRNA	ENST00000454530	NA	NA	NA	NA	XLOC_001321	NA	ENST00000454530	NA	NA	"BROAD Institute lincRNA (XLOC_001321), lincRNA [TCONS_00002799]"	chr2:3161509-3161568	hs|2p25.3	Agilent_HUMAN_G3V2	ENST00000454530	ENST00000454530	chr2	  3161509	  3161568	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38764_PI429285431	3.4324806	P	3.3020003	P	1.09465807262734	0	lncRNA	39756-1_{1..1578}	n384356|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fdp.1||6.2341400|-0.1456950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384356|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fdp.1||6.2341400|-0.1456950	chr3	160285456	160287033	+	NA	NA	NA	NA	KPNA4	NA	chr3:160275456-160283376	inter
CUST_555_PI429285431	2.165322	A	1.6463094	A	1.43297416541968	0	lncRNA	547-1_{1..326}	"transcript_id ""ENST00000447257.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447257.1"" | genecode_v17"	chr1	209545400	209545725	+	ENSG00000231648.1	ENST00000447257.1	RP11-372M18.2	RP11-372M18.2-002	NA	NA	NA	inter
CUST_15225_PI429285431	1.1291595	A	0.9421743	A	1.13838235083053	0	lncRNA	16895-1_{1..869}	lnc-RP11-785H20.1.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-785H20.1.1-1:5	chr8	123005837	123006705	+	lnc-RP11-785H20.1.1-1	lnc-RP11-785H20.1.1-1:5	XLOC_006911	linc-ZHX2-1	NA	NA	NA	inter
CUST_29892_PI429285431	1.1449168	A	1.1628858	A	0.987622082808701	0	lncRNA	31655-1_{1..282}	n333964|M14189|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194306_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194306_04|-1.1234400|-0.2628494	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333964|M14189|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194306_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194306_04|-1.1234400|-0.2628494	chr6	  4088237	  4088518	-	NA	NA	NA	NA	C6orf201	NA	chr6:4079440-4098519	inner
CUST_6408_PI429285431	7.763821	P	7.8808436	P	0.922088673163985	0	lncRNA	6344-1_{1..1966}	"transcript_id ""ENST00000597683.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000597683.1"" | genecode_v17"	chr19	 24216251	 24218216	+	ENSG00000268362.1	ENST00000597683.1	CTD-2017D11.1	CTD-2017D11.1-002	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00"	NA	inter
LNCA_21_P0010584	0.89947176	A	1.7738311	A	0.545496051898991	0	lncRNA	TCONS_l2_00000923	NA	NA	NA	NA	XLOC_l2_000696	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000696), lincRNA [TCONS_l2_00000923]"	chr1:241577041-241577100	hs|1q43	Agilent_HUMAN_G3V2	TCONS_l2_00000923	TCONS_l2_00000923	chr1	241577041	241577100	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008837	2.9285464	A	1.755681	A	2.25459046657486	0	lncRNA	TCONS_00024001	NA	NA	NA	NA	XLOC_011341	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011341), lincRNA [TCONS_00024001]"	chr15:86623217-86668712	hs|15q25.3	Agilent_HUMAN_G3V2	TCONS_00024001	TCONS_00024001	chr15	 86623217	 86668712	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51158_PI429285431	1.1618488	A	0.8938138	A	1.20416659414085	0	lncRNA	54780-1_{1..597}	hg19_lincRNAsTranscripts_TCONS_l2_00007692 range=chr14:38218187-38219095 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007692 range=chr14:38218187-38219095 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 38218187	 38218783	+	NA	NA	NA	NA	TTC6	NA	chr14:38208187-38229095	inter
CUST_50319_PI429285431	7.7635202	P	7.628426	P	1.09816451551003	0	lncRNA	54038-1_{1..220}	hg19_lincRNAsTranscripts_TCONS_l2_00029566 range=chr9:116613053-116613376 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029566 range=chr9:116613053-116613376 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	116613053	116613272	-	NA	NA	NA	NA	ZNF618	NA	chr9:116603053-116623376	inter
LNCA_21_P0005763	2.054707	A	0.9135427	A	2.20558949336978	0	lncRNA	THC2704189	NA	NA	NA	NA	XLOC_006928	NA	NA	THC2704189	NA	"BROAD Institute lincRNA (XLOC_006928), lincRNA [TCONS_00014859]"	chr8:132089418-132089477	hs|8q24.22	Agilent_HUMAN_G3V2	THC2704189	THC2704189	chr8	132089418	132089477	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26636_PI429285431	0.89706224	A	0.91681844	A	0.986399381333492	0	lncRNA	28139-1_{1..522}	lnc-ALG14-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALG14-1:2	chr1	 95699256	 95699777	-	lnc-ALG14-1	lnc-ALG14-1:2	ENSG00000226026.1	RP11-57H12.3	TMEM56-RWDD3	NA	chr1:95689256-95709535	inner
LNCA_21_P0001385	0.8939282	A	0.9102868	A	0.98872512576789	0	lncRNA	TCONS_00001191	NA	NA	NA	NA	XLOC_000456	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000456), lincRNA [TCONS_00001191]"	chr1:168838487-168838546	hs|1q24.2	Agilent_HUMAN_G3V2	TCONS_00001191	TCONS_00001191	chr1	168838487	168838546	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009917	10.988585	P	12.023372	P	0.488087936542302	0	lncRNA	AK124277	NA	AK124277	NA	Hs.517140	XLOC_013814	NA	NA	THC2513358	NA	"BROAD Institute lincRNA (XLOC_013814), lincRNA [TCONS_00028072]"	chr20:56130196-56130137	hs|20q13.31	Agilent_HUMAN_G3V2	AK124277	AK124277	chr20	 56130137	 56130196	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40064_PI429285431	1.2063694	A	1.9518871	A	0.596453800258477	0	lncRNA	40914-1_{1..2430}	n407280|NR_026751_4|lncRNA|Homosapiens||RefGeneNoncode|NR_026751_4||0.3692440|-0.2655173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407280|NR_026751_4|lncRNA|Homosapiens||RefGeneNoncode|NR_026751_4||0.3692440|-0.2655173	chr6	  1267360	  1269789	-	NA	NA	NA	NA	FOXQ1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr6:1312675-1314993"	NA	inner
CUST_12448_PI429285431	0.8821566	A	0.9005959	A	0.987300183201661	0	lncRNA	14060-1_{1..298}	lnc-DIAPH3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DIAPH3-5:1	chr13	 57790765	 57791062	-	lnc-DIAPH3-5	lnc-DIAPH3-5:1	XLOC_010630	linc-PCDH8-2	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
LNCA_21_P0004577	1.1633667	A	0.8996069	A	1.20060351761842	0	lncRNA	TCONS_00011076	NA	NA	NA	NA	XLOC_005063	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005063), lincRNA [TCONS_00011076]"	chr5:157929743-157929684	hs|5q33.3	Agilent_HUMAN_G3V2	TCONS_00011076	TCONS_00011076	chr5	157929684	157929743	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44493_PI429285431	7.2723594	P	7.5456367	P	0.827437759218194	0	lncRNA	49094-1_{1..3000}	"gi|337756461|ref|NR_039989.1| Homo sapiens uncharacterized LOC100505738 (LOC100505738), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|337756461|ref|NR_039989.1| Homo sapiens uncharacterized LOC100505738 (LOC100505738), non-coding RNA"	Chr5	  8457800	  8460799	+	100505738	NR_039989.1	NA	NA	NA	NA	NA	inter
CUST_7193_PI429285431	1.0379403	A	0.92041916	A	1.08486922182459	0	lncRNA	7521-1_{1..224}	"transcript_id ""ENST00000517173.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517173.1"" | genecode_v17"	chr3	173775431	173775654	+	ENSG00000252982.1	ENST00000517173.1	RN7SKP234	RN7SKP234-201	NLGN1	NA	chr3:173765431-173785654	inner
CUST_27191_PI429285431	0.9029186	A	0.9131004	A	0.992967359607586	0	lncRNA	28731-1_{1..292}	n324321|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042954|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042954|-1.0629000|-0.0971014	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324321|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042954|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042954|-1.0629000|-0.0971014	chr6	161039309	161039600	+	NA	NA	NA	NA	LPA	NA	chr6:161029309-161051654	inner
CUST_49591_PI429285431	3.3694334	P	4.561925	P	0.437546544952082	0	lncRNA	53380-1_{1..1062}	hg19_lincRNAsTranscripts_TCONS_l2_00024967 range=chr6:147171327-147181996 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024967 range=chr6:147171327-147181996 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	147171327	147172388	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41861_PI429285431	0.91207147	A	0.9014936	A	1.00735896584479	0	lncRNA	43515-1_{1..77}	ENST00000362147 ncrna:miRNA chromosome:GRCh37:20:61151510:61151586:1 gene:ENSG00000199017 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362147 ncrna:miRNA chromosome:GRCh37:20:61151510:61151586:1 gene:ENSG00000199017 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 61151510	 61151586	+	ENSG00000199017	ENST00000362147	NA	NA	C20orf166	NA	chr20:61147660-61161586	inner
CUST_45503_PI429285431	1.2693696	A	0.9083525	A	1.28433103183962	0	lncRNA	49914-1_{1..549}	"gi|310120433|ref|XR_109003.1| PREDICTED: Homo sapiens uncharacterized protein DKFZp667F0711 (DKFZp667F0711), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120433|ref|XR_109003.1| PREDICTED: Homo sapiens uncharacterized protein DKFZp667F0711 (DKFZp667F0711), misc_RNA"	NA	NA	NA	NA	NA	XR_109003.1	NA	NA	NA	NA	NA	Unknown
CUST_33455_PI429285431	5.6838236	P	5.5847864	P	1.07105844015773	0	lncRNA	35030-1_{1..2253}	n340188|AL133118|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2649|NULL|-1.1997700|-0.4169501	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340188|AL133118|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2649|NULL|-1.1997700|-0.4169501	chr4	101316497	101318749	-	NA	NA	NA	NA	EMCN	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40chr4:101316498-101328733"	NA	inner
CUST_19143_PI429285431	4.2638197	P	0.8939249	A	10.3380687751154	0	lncRNA	20818-1_{1..3000}	lnc-NOL6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-NOL6-3:1	NA	NA	     2999	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25613_PI429285431	3.5775712	P	3.3638036	P	1.1597128243287	0	lncRNA	27142-1_{1..1483}	lnc-RPLP1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RPLP1-3:2	chr15	 70134400	 70135882	+	lnc-RPLP1-3	lnc-RPLP1-3:2	ENSG00000259703.1	LINC00593	NA	NA	NA	inter
CUST_35935_PI429285431	1.4590611	A	1.5094179	A	0.965697468002857	0	lncRNA	37298-1_{1..2196}	n344573|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_121|NULL|-1.3577600|-0.3716644	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344573|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_121|NULL|-1.3577600|-0.3716644	chr2	224518242	224520437	+	NA	NA	NA	NA	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_32429_PI429285431	0.8944776	A	0.8965875	A	0.998538597653658	0	lncRNA	34104-1_{1..1881}	n339023|AK057534|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1452|NULL|1.0542000|-0.2953479	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339023|AK057534|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1452|NULL|1.0542000|-0.2953479	chr2	175647773	175649653	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005920	0.87564135	A	1.0127681	A	0.909328357970573	0	lncRNA	ENST00000522989	NA	NA	NA	NA	XLOC_006683	NA	ENST00000522989	THC2703350	NA	"BROAD Institute lincRNA (XLOC_006683), lincRNA [TCONS_00015204]"	chr8:1200522-1208859	hs|8p23.3	Agilent_HUMAN_G3V2	ENST00000522989	ENST00000522989	chr8	  1200522	  1208859	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36028_PI429285431	6.615079	P	6.5439367	P	1.05054815955423	0	lncRNA	37356-4_{9001..12000}	n344637|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_185|NULL|-1.3340200|-0.3109463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344637|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_185|NULL|-1.3340200|-0.3109463	chr11	 65198792	 65201791	-	NA	NA	NA	NA	FRMD8	NA	chr11:65179792-65180996	inter
CUST_14565_PI429285431	1.4191415	A	1.082456	A	1.26285193669659	0	lncRNA	16233-1_{1..626}	lnc-C1GALT1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1GALT1-1:3	chr7	  7317216	  7317841	+	lnc-C1GALT1-1	lnc-C1GALT1-1:3	XLOC_005981	linc-MIOS	NA	NA	NA	inter
CUST_26952_PI429285431	1.9029195	A	1.6319096	A	1.2066521999293	0	lncRNA	28473-1_{1..2000}	n324033|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053051|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053051|0.0434181|-0.3630431	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324033|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053051|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053051|0.0434181|-0.3630431	chr9	 93943569	 93945568	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90"	NA	inter
CUST_18818_PI429285431	1.6846431	A	2.4452028	A	0.590267289451301	0	lncRNA	20512-1_{1..793}	lnc-C2orf42-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-2:3	chr2	 70322091	 70322883	-	lnc-C2orf42-2	lnc-C2orf42-2:3	ENSG00000226505	AC016700.3	PCBP1	NA	chr2:70314585-70316335	inter
CUST_27910_PI429285431	1.1339169	A	1.1898652	A	0.961961926635005	0	lncRNA	29509-1_{1..766}	n325152|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330764|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330764|-1.3570500|-0.3663995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325152|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330764|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330764|-1.3570500|-0.3663995	chr2	122264510	122265275	+	NA	NA	NA	NA	CLASP1	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.20chr2:122254510-122280402"	NA	inner
CUST_23686_PI429285431	0.89269894	A	1.0733379	A	0.882312139588156	0	lncRNA	25251-1_{1..701}	lnc-SPNS1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPNS1-1:2	chr16	 29001510	 29002210	+	lnc-SPNS1-1	lnc-SPNS1-1:2	ENSG00000261067.1	RP11-264B17.3	LAT	NA	chr16:28996147-29002104	inner
LNCA_21_P0012267	0.87857556	A	0.8814037	A	0.998041602899748	0	lncRNA	TCONS_l2_00017672	NA	NA	NA	NA	XLOC_l2_009332	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009332), lincRNA [TCONS_l2_00017672]"	chr22:25917431-25917490	hs|22q12.1	Agilent_HUMAN_G3V2	TCONS_l2_00017672	TCONS_l2_00017672	chr22	 25917431	 25917490	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17194_PI429285431	5.6918507	P	5.666684	P	1.01759726626735	0	lncRNA	18907-1_{1..2750}	lnc-COL28A1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL28A1-1:7	chr7	  7594787	  7597536	-	lnc-COL28A1-1	lnc-COL28A1-1:7	XLOC_006350	linc-COL28A1	NA	NA	NA	inter
CUST_41696_PI429285431	0.87815696	A	2.1301916	A	0.419855665356907	0	lncRNA	43177-1_{1..68}	ENST00000580810 ncrna:miRNA chromosome:GRCh37:14:95604256:95604323:-1 gene:ENSG00000264607 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580810 ncrna:miRNA chromosome:GRCh37:14:95604256:95604323:-1 gene:ENSG00000264607 gene_biotype:miRNA transcript_biotype:miRNA	chr14	 95604256	 95604323	-	ENSG00000264607	ENST00000580810	NA	NA	DICER1	NA	chr14:95594256-95614323	inner
CUST_36604_PI429285431	2.5650182	A	3.5416932	P	0.508149530888829	0	lncRNA	37798-1_{1..3000}	n345101|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_650|NULL|-1.2769600|-0.2497625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n345101|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_650|NULL|-1.2769600|-0.2497625	chr10	 47096360	 47099359	-	NA	NA	NA	NA	PPYR1	NA	chr10:47086360-47088320	inter
CUST_33235_PI429285431	0.8855859	A	0.8895338	A	0.997267264982721	0	lncRNA	34822-1_{1..1646}	n339935|BC031269|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2384|NULL|-0.7882160|-0.3063231	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339935|BC031269|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2384|NULL|-0.7882160|-0.3063231	chr10	   674577	   676222	+	NA	NA	NA	NA	DIP2C	NA	chr10:664577-687195	inner
CUST_613_PI429285431	2.08089	A	1.7857032	A	1.22704384447462	0	lncRNA	605-1_{1..740}	"transcript_id ""ENST00000438371.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438371.1"" | genecode_v17"	chr1	236105853	236106592	-	ENSG00000237845.1	ENST00000438371.1	RP5-940F7.2	RP5-940F7.2-001	NA	NA	NA	inter
CUST_28213_PI429285431	0.92666095	A	0.91074055	A	1.01109629256413	0	lncRNA	29843-1_{1..389}	n325497|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322424|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322424|-1.1776300|-0.4356417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325497|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322424|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322424|-1.1776300|-0.4356417	chr2	   719305	   719693	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22858_PI429285431	1.7348886	A	0.88425684	A	1.80329041802438	0	lncRNA	24436-1_{1..447}	lnc-RP11-625H11.1.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-625H11.1.1-3:2	chr15	 63136579	 63137025	-	lnc-RP11-625H11.1.1-3	lnc-RP11-625H11.1.1-3:2	ENSG00000259370.1	RP11-1069G10.1	TLN2	NA	chr15:63126579-63136830	inner
CUST_13284_PI429285431	1.5968082	A	1.0758493	A	1.43490865584568	0	lncRNA	14916-1_{1..506}	lnc-TTC34-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC34-3:9	chr1	  2977065	  2977570	-	lnc-TTC34-3	lnc-TTC34-3:9	XLOC_000682	linc-MMEL1-3	PRDM16	NA	chr1:2985742-2987309	inter
LNCA_21_P0014819	1.9484897	A	2.6319995	A	0.622648645775012	0	lncRNA	XR_132659	XR_132659	XR_132659	NA	NA	LOC100653001	uncharacterized LOC100653001	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100653001 (LOC100653001), miscRNA [XR_132659]"	chr19:54385720-54385661	hs|19q13.42	Agilent_HUMAN_G3V2	XR_132659	XR_132659	chr19	 54385661	 54385720	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29549_PI429285431	7.707825	P	6.991955	P	1.64247339298158	0	lncRNA	31309-1_{1..428}	n333029|AF172940|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072445|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072445|1.2152700|-0.3273936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333029|AF172940|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072445|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072445|1.2152700|-0.3273936	chr2	 30369826	 30370253	+	NA	NA	NA	NA	YPEL5	NA	chr2:30369750-30383399	inner
CUST_36741_PI429285431	1.0956472	A	0.9263607	A	1.1245022127535	0	lncRNA	37915-1_{1..3000}	n345222|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_771|NULL|-1.3919000|-0.3917353	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345222|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_771|NULL|-1.3919000|-0.3917353	chr13	 42812942	 42815941	+	NA	NA	NA	NA	DGKH	"hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-24.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.22;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-21.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30chr13:42802942-42803891"	NA	inter
CUST_38720_PI429285431	4.8814106	P	4.4129424	P	1.38363959080151	0	lncRNA	39714-1_{1..857}	n384199|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bnr.1||0.6837380|-0.2947444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384199|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bnr.1||0.6837380|-0.2947444	chr22	 51222224	 51223080	+	NA	NA	NA	NA	RABL2B	NA	chr22:51212224-51222087	inter
CUST_45396_PI429285431	7.994731	P	8.075192	P	0.945755390954892	0	lncRNA	49826-1_{1..2034}	"gi|223633920|ref|NR_026847.1| Homo sapiens uncharacterized LOC286359 (LOC286359), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223633920|ref|NR_026847.1| Homo sapiens uncharacterized LOC286359 (LOC286359), non-coding RNA"	Chr9	100153118	100155151	-	286359	NR_026847.1	NA	NA	NA	NA	NA	inter
CUST_50459_PI429285431	0.89589334	A	0.90601724	A	0.993007211386509	0	lncRNA	54161-6_{15001..16608}	hg19_lincRNAsTranscripts_TCONS_l2_00030253 range=chrX:73164177-73234961 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030253 range=chrX:73164177-73234961 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 73179177	 73180784	+	NA	NA	NA	NA	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_49491_PI429285431	3.0725026	A	2.9810252	A	1.06546071503432	0	lncRNA	53283-1_{1..878}	hg19_lincRNAsTranscripts_TCONS_l2_00024035 range=chr6:11417267-11429686 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024035 range=chr6:11417267-11429686 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 11417267	 11418144	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15482_PI429285431	1.393509	A	1.2065933	A	1.13832751202851	0	lncRNA	17170-1_{1..343}	lnc-C5orf49-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf49-2:2	chr5	  7372986	  7373328	-	lnc-C5orf49-2	lnc-C5orf49-2:2	XLOC_004727	linc-NSUN2-1	NA	NA	NA	inter
CUST_16887_PI429285431	0.89037	A	1.1535453	A	0.833251953645465	0	lncRNA	18596-1_{1..305}	lnc-NDFIP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDFIP2-3:1	chr13	 80240740	 80241044	+	lnc-NDFIP2-3	lnc-NDFIP2-3:1	XLOC_010447	linc-SLITRK5-15	NA	NA	NA	inter
CUST_33576_PI429285431	0.8989269	A	0.9103677	A	0.992101202488362	0	lncRNA	35141-1_{1..283}	n340328|AF009272|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2789|NULL|-1.1101000|-0.3369533	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340328|AF009272|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2789|NULL|-1.1101000|-0.3369533	chr5	  9121790	  9122072	+	NA	NA	NA	NA	SEMA5A	NA	chr5:9111790-9132074	inner
CUST_42114_PI429285431	0.8886334	A	0.9016699	A	0.991004490660059	0	lncRNA	44083-1_{1..89}	ENST00000584182 ncrna:miRNA chromosome:GRCh37:3:87275339:87275427:-1 gene:ENSG00000264119 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584182 ncrna:miRNA chromosome:GRCh37:3:87275339:87275427:-1 gene:ENSG00000264119 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 87275339	 87275427	-	ENSG00000264119	ENST00000584182	NA	NA	CHMP2B	NA	chr3:87276413-87285427	inter
CUST_24313_PI429285431	2.0623655	A	2.5270174	A	0.7246459020338	0	lncRNA	25864-1_{1..404}	lnc-TSSC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSSC4-1:1	chr11	  2429054	  2429457	+	lnc-TSSC4-1	lnc-TSSC4-1:1	ENSG00000230483.1	AC124057.5	TRPM5	"hg19_refFlat_TRPM5:range=chr11:2426167-24442665'pad=0,hg19_refFlat_TRPM5:range=chr11:2426167-24442665'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00chr11:2425745-2439138"	NA	inner
CUST_34293_PI429285431	3.488083	P	4.6638975	P	0.442633791953697	0	lncRNA	35791-1_{1..1528}	n341153|BC043517|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3619|NULL|-0.4152650|-0.1962153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341153|BC043517|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3619|NULL|-0.4152650|-0.1962153	chr11	128396036	128397563	+	NA	NA	NA	NA	ETS1	NA	chr11:128386036-128410278	inner
CUST_35249_PI429285431	6.6881704	P	5.1291103	P	2.94661811972273	0	lncRNA	36650-2_{3001..3097}	n342249|AK026426|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4739|NULL|14.8719000|-0.3830765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342249|AK026426|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4739|NULL|14.8719000|-0.3830765	chrX	128585370	128585466	-	NA	NA	NA	NA	SMARCA1	NA	chrX:128580478-128657460	inner
CUST_29095_PI429285431	0.8907017	A	1.243793	A	0.782904749080341	0	lncRNA	30828-1_{1..547}	n326591|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000024223|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000024223|-1.3311700|-0.4757393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326591|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000024223|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000024223|-1.3311700|-0.4757393	chr1	 60011054	 60011600	+	NA	NA	NA	NA	FGGY	NA	chr1:60001054-60037108	inner
CUST_51878_PI429285431	0.8785528	A	0.8836629	A	0.996464214256756	0	lncRNA	55428-1_{1..665}	hg19_lincRNAsTranscripts_TCONS_l2_00013208 range=chr19:53483702-53485913 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013208 range=chr19:53483702-53485913 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 53483702	 53484366	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005551	0.8777495	A	0.884214	A	0.995529174081754	0	lncRNA	TCONS_00014088	NA	NA	NA	NA	XLOC_006015	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006015), lincRNA [TCONS_00014088]"	chr7:25807176-25807235	hs|7p15.2	Agilent_HUMAN_G3V2	TCONS_00014088	TCONS_00014088	chr7	 25807176	 25807235	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008371	0.8764728	A	0.88134295	A	0.996629960631633	0	lncRNA	TCONS_00022587	NA	NA	NA	NA	XLOC_010897	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010897), lincRNA [TCONS_00022587]"	chr14:88511659-88511718	hs|14q31.3	Agilent_HUMAN_G3V2	TCONS_00022587	TCONS_00022587	chr14	 88511659	 88511718	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8973_PI429285431	3.4826639	P	3.5930824	P	0.926319314265438	0	lncRNA	10505-1_{1..568}	lnc-WRNIP1-2:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRNIP1-2:16	chr6	  2269932	  2270499	+	lnc-WRNIP1-2	lnc-WRNIP1-2:16	ENSG00000250903	RP1-80B9.2	NA	NA	NA	inter
LNCA_21_P0009425	2.5387075	A	0.8802453	A	3.1567985532674	0	lncRNA	BC034434	NA	BC034434	NA	NA	XLOC_012843	NA	NA	THC2602808	NA	"BROAD Institute lincRNA (XLOC_012843), lincRNA [TCONS_00026206]"	chr18:51106103-51106044	hs|18q21.2	Agilent_HUMAN_G3V2	BC034434	BC034434	chr18	 51106044	 51106103	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13198_PI429285431	0.89414847	A	0.8872118	A	1.00481971087381	0	lncRNA	14826-1_{1..452}	lnc-TCTE3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCTE3-3:1	chr6	170337525	170337976	-	lnc-TCTE3-3	lnc-TCTE3-3:1	XLOC_005942	linc-TCTE3-7	NA	NA	NA	inter
CUST_37984_PI429285431	2.0294232	A	1.2754867	A	1.68638799275894	0	lncRNA	39071-1_{1..1298}	n346539|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2089|NULL|-1.3048500|-0.3029892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346539|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2089|NULL|-1.3048500|-0.3029892	chr14	 61761955	 61763252	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44236_PI429285431	3.5263848	P	3.7933028	P	0.83109309797791	0	lncRNA	48885-1_{1..2211}	"gi|224177496|ref|NR_026991.1| Homo sapiens H1FX antisense RNA 1 (H1FX-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224177496|ref|NR_026991.1| Homo sapiens H1FX antisense RNA 1 (H1FX-AS1), non-coding RNA"	Chr3	129035114	129037324	+	339942	NR_026991.1	NA	NA	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60"	NA	inter
CUST_32276_PI429285431	0.8801354	A	0.88659394	A	0.99553328677776	0	lncRNA	33962-2_{3001..5818}	n338852|BC036673|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1275|NULL|-1.1478600|-0.4162130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338852|BC036673|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1275|NULL|-1.1478600|-0.4162130	chr2	 58239366	 58242183	-	NA	NA	NA	NA	NA	"hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-22.90"	NA	inter
CUST_26144_PI429285431	4.3042665	P	4.0877604	P	1.16191626274284	0	lncRNA	27655-1_{1..754}	lnc-WRAP73-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WRAP73-2:1	chr1	  3585189	  3585942	-	lnc-WRAP73-2	lnc-WRAP73-2:1	ENSG00000227589.1	RP5-1092A11.5	TP73	NA	chr1:3575189-3595336	inner
CUST_22602_PI429285431	1.497222	A	1.4197242	A	1.05518634490199	0	lncRNA	24187-1_{1..664}	lnc-C2orf42-3:30	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:30	chr2	 70313187	 70313850	-	lnc-C2orf42-3	lnc-C2orf42-3:30	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_2850_PI429285431	1.5365987	A	1.9076563	A	0.773215465996921	0	lncRNA	2833-1_{1..771}	"transcript_id ""ENST00000587704.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587704.1"" | genecode_v17"	chr7	 63348603	 63349373	-	ENSG00000236299.3	ENST00000587704.1	RP11-340I6.7	RP11-340I6.7-002	NA	NA	NA	inter
CUST_39297_PI429285431	5.349668	P	5.539371	P	0.876786202077613	0	lncRNA	40266-1_{1..1324}	n386304|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gri.1||3.8098700|-0.0971384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386304|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gri.1||3.8098700|-0.0971384	chr22	 18761201	 18762524	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16745_PI429285431	2.1402571	A	1.6408118	A	1.41366991770024	0	lncRNA	18452-1_{1..719}	lnc-KIAA1147-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1147-3:3	chr7	141228844	141229562	-	lnc-KIAA1147-3	lnc-KIAA1147-3:3	XLOC_006625	linc-MRPS33-2	NA	NA	NA	inter
CUST_4686_PI429285431	0.89237195	A	0.90023875	A	0.994561989562515	0	lncRNA	4633-1_{1..807}	"transcript_id ""ENST00000599264.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599264.1"" | genecode_v17"	chr13	106359248	106360054	+	ENSG00000226620.2	ENST00000599264.1	LINC00343	LINC00343-003	NA	NA	NA	inter
CUST_50499_PI429285431	4.9769354	P	2.8516464	A	4.36290481819496	0	lncRNA	54195-1_{1..845}	hg19_lincRNAsTranscripts_TCONS_l2_00030568 range=chrX:103315076-103316952 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030568 range=chrX:103315076-103316952 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	103315076	103315920	-	NA	NA	NA	NA	MCART6	NA	chrX:103315219-103326952	inter
CUST_41962_PI429285431	9.786426	P	9.977375	P	0.876029282598357	0	lncRNA	43746-1_{1..80}	ENST00000411312 ncrna:miRNA chromosome:GRCh37:19:1816158:1816237:-1 gene:ENSG00000223244 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000411312 ncrna:miRNA chromosome:GRCh37:19:1816158:1816237:-1 gene:ENSG00000223244 gene_biotype:miRNA transcript_biotype:miRNA	chr19	  1816158	  1816237	-	ENSG00000223244	ENST00000411312	NA	NA	REXO1	NA	chr19:1815245-1826237	inner
CUST_9226_PI429285431	1.1257172	A	1.9272405	A	0.573743058848498	0	lncRNA	10737-1_{1..547}	lnc-FEZF2-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FEZF2-1:8	chr3	 62304327	 62304873	-	lnc-FEZF2-1	lnc-FEZF2-1:8	ENSG00000241472	RP11-204J18.3	C3orf14	NA	chr3:62305396-62314453	inter
CUST_34181_PI429285431	8.520466	P	8.83363	P	0.804874637380485	0	lncRNA	35697-1_{1..593}	n341030|BC024968|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3496|NULL|-0.9502900|-0.2324284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341030|BC024968|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3496|NULL|-0.9502900|-0.2324284	chr11	 47599276	 47599868	+	NA	NA	NA	NA	KBTBD4	"hg19_refFlat_KBTBD4:range=chr11:47594482-475995515'pad=0,hg19_refFlat_KBTBD4:range=chr11:47594482-475995515'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40;hg19_refFlat_KBTBD4:range=chr11:47594482-476005035'pad=0,hg19_refFlat_KBTBD4:range=chr11:47594482-476005035'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40chr11:47593749-47600567"	NA	inner
CUST_11773_PI429285431	7.1011896	P	6.989904	P	1.0801903762173	0	lncRNA	13351-1_{1..2429}	lnc-C5orf39-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf39-2:2	chr5	 42991255	 42993683	-	lnc-C5orf39-2	lnc-C5orf39-2:2	XLOC_004803	linc-SEPP1-3	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40"	NA	inter
CUST_48706_PI429285431	0.87579197	A	0.8768134	A	0.999292249249159	0	lncRNA	52548-1_{1..1352}	hg19_lincRNAsTranscripts_TCONS_l2_00014847 range=chr2:114631030-114639927 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014847 range=chr2:114631030-114639927 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	114631030	114632381	-	NA	NA	NA	NA	ACTR3	"hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.30chr2:114647537-114649927"	NA	inter
CUST_5809_PI429285431	0.8861554	A	1.10804	A	0.857444620187204	0	lncRNA	5735-1_{1..552}	"transcript_id ""ENST00000584721.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584721.1"" | genecode_v17"	chr17	 30738236	 30738787	+	ENSG00000266385.1	ENST00000584721.1	RP11-227G15.8	RP11-227G15.8-001	NA	"hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70"	NA	inter
CUST_9769_PI429285431	1.1609492	A	1.211648	A	0.965468570431529	0	lncRNA	11286-1_{1..382}	lnc-RP11-17M16.1.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-17M16.1.1-2:3	chr18	 74253650	 74254031	+	lnc-RP11-17M16.1.1-2	lnc-RP11-17M16.1.1-2:3	XLOC_012726	linc-ZNF236-4	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.42;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60"	NA	inter
CUST_6391_PI429285431	0.9274975	A	0.9050206	A	1.01570179768842	0	lncRNA	6321-1_{1..546}	"transcript_id ""ENST00000600071.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600071.1"" | genecode_v17"	chr19	 22226302	 22226847	-	ENSG00000269199.1	ENST00000600071.1	AC003973.5	AC003973.5-001	ZNF257	NA	chr19:22235266-22242807	inter
CUST_48636_PI429285431	1.5269988	A	0.8749415	A	1.5714074442092	0	lncRNA	52483-1_{1..617}	hg19_lincRNAsTranscripts_TCONS_l2_00013772 range=chr2:89104127-89106098 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013772 range=chr2:89104127-89106098 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 89104127	 89104743	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010950	0.89847714	A	1.4236603	A	0.694870885710769	0	lncRNA	THC2554014	NA	NA	NA	NA	XLOC_l2_002033	NA	NA	THC2554014	NA	"BROAD Institute lincRNA (XLOC_l2_002033), lincRNA [TCONS_l2_00004216]"	chr10:081564267-081564208	hs|10q22.3	Agilent_HUMAN_G3V2	THC2554014	THC2554014	chr10	 81564208	 81564267	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28488_PI429285431	1.1186655	A	1.9940947	A	0.545091678104709	0	lncRNA	30155-1_{1..672}	n325830|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000104844|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000104844|-0.6642930|-0.0805562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325830|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000104844|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000104844|-0.6642930|-0.0805562	chr11	 63849097	 63849768	-	NA	NA	NA	NA	MACROD1	NA	chr11:63839097-63863552	inner
CUST_6625_PI429285431	4.1419926	P	5.555604	P	0.375370869531828	0	lncRNA	6571-1_{1..415}	"transcript_id ""ENST00000447956.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447956.1"" | genecode_v17"	chr20	  2187863	  2188277	+	ENSG00000226644.1	ENST00000447956.1	RP11-128M1.1	RP11-128M1.1-001	NA	NA	NA	inter
CUST_31941_PI429285431	1.2588222	A	2.0984187	A	0.558799835051391	0	lncRNA	33668-2_{3001..5693}	n338497|CR627061|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|894|NULL|-1.0032500|-0.2527727	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338497|CR627061|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|894|NULL|-1.0032500|-0.2527727	chr19	 32081945	 32084637	-	NA	NA	NA	NA	THEG5	"hg19_refFlat_THEG5:range=chr19:32083187-320839455'pad=0,hg19_refFlat_THEG5:range=chr19:32083187-320839455'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.30chr19:32083187-32083945"	NA	inner
CUST_30499_PI429285431	0.88795125	A	0.90076804	A	0.991155423581284	0	lncRNA	32279-1_{1..1817}	n335653|CR610055|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000289250|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000289250|-0.8496930|-0.1666762	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335653|CR610055|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000289250|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000289250|-0.8496930|-0.1666762	chr6	  3076991	  3078807	-	NA	NA	NA	NA	RIPK1	"hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_RIPK1:range=chr6:3077058-31135735'pad=0,hg19_refFlat_RIPK1:range=chr6:3077058-31135735'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50chr6:3077058-3088808"	NA	inner
CUST_23710_PI429285431	6.2127733	P	6.1466594	P	1.04689293034759	0	lncRNA	25275-1_{1..574}	lnc-AC145676.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC145676.2.1-1:1	chr7	   193948	   194521	-	lnc-AC145676.2.1-1	lnc-AC145676.2.1-1:1	ENSG00000240093.1	AC093627.12	FAM20C	NA	chr7:192969-204180	inner
CUST_9334_PI429285431	0.89211	A	0.90118086	A	0.993732283562396	0	lncRNA	10842-1_{1..1634}	lnc-LRP5L-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRP5L-2:9	chr22	 25959270	 25960903	-	lnc-LRP5L-2	lnc-LRP5L-2:9	XLOC_014323	linc-LRP5L-1	ADRBK2	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70chr22:25960861-25969453"	NA	inter
CUST_19941_PI429285431	3.1104786	P	2.9893804	A	1.08756241550425	0	lncRNA	21596-1_{1..570}	lnc-TMEM241-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM241-1:1	chr18	 20513551	 20514120	-	lnc-TMEM241-1	lnc-TMEM241-1:1	ENSG00000265943.1	RP11-739L10.1	RBBP8	NA	chr18:20513295-20523727	inner
LNCA_21_P0002214	0.90368074	A	0.92539775	A	0.985059647060883	0	lncRNA	TCONS_00003675	NA	NA	NA	NA	XLOC_001469	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001469), lincRNA [TCONS_00003675]"	chr2:52925987-52926046	hs|2p16.2	Agilent_HUMAN_G3V2	TCONS_00003675	TCONS_00003675	chr2	 52925987	 52926046	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50765_PI429285431	9.429694	P	9.92528	P	0.709273523849519	0	lncRNA	54428-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00004567 range=chr11:65266197-65273969 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004567 range=chr11:65266197-65273969 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65269197	 65272196	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12002_PI429285431	5.2064085	P	5.3281054	P	0.919105960842552	0	lncRNA	13583-1_{1..1030}	lnc-ZNF792-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ZNF792-1:1	chr19	 35395865	 35396894	-	lnc-ZNF792-1	lnc-ZNF792-1:1	XLOC_013310	linc-ZNF599-1	NA	NA	NA	inter
CUST_49647_PI429285431	2.0693293	A	2.0276444	A	1.0293152454422	0	lncRNA	53430-1_{1..2719}	hg19_lincRNAsTranscripts_TCONS_l2_00025967 range=chr7:65121846-65174629 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025967 range=chr7:65121846-65174629 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 65121846	 65124564	+	NA	NA	NA	NA	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50"	NA	inter
CUST_12650_PI429285431	0.88758236	A	0.8966549	A	0.993731126374482	0	lncRNA	14265-1_{1..2642}	lnc-NR2F2-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR2F2-8:2	chr15	 96049283	 96051924	+	lnc-NR2F2-8	lnc-NR2F2-8:2	XLOC_011368	linc-NR2F2-3	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.81;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60"	NA	inter
CUST_13501_PI429285431	1.4982098	A	1.4918345	A	1.00442879949266	0	lncRNA	15141-1_{1..1267}	lnc-CYP4A22-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CYP4A22-2:1	chr1	 47645537	 47646803	+	lnc-CYP4A22-2	lnc-CYP4A22-2:1	XLOC_000175	linc-CMPK1-3	PDZK1IP1	NA	chr1:47649261-47655771	inter
CUST_32842_PI429285431	2.8534167	A	1.3536115	A	2.82804524195595	0	lncRNA	34476-1_{1..2751}	n339498|AJ001893|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1938|NULL|-0.5644130|-0.2624922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339498|AJ001893|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1938|NULL|-0.5644130|-0.2624922	chr21	 39171575	 39174325	+	NA	NA	NA	NA	KCNJ6	NA	chr21:39161575-39184318	inner
CUST_48158_PI429285431	6.9374123	P	7.1461086	P	0.865318828640625	0	lncRNA	52023-1_{1..498}	"gi|410169937|ref|XR_172433.1| PREDICTED: Homo sapiens uncharacterized LOC100130285 (LOC100130285), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410169937|ref|XR_172433.1| PREDICTED: Homo sapiens uncharacterized LOC100130285 (LOC100130285), misc_RNA"	NA	NA	NA	NA	NA	XR_172433.1	NA	NA	NA	NA	NA	Unknown
CUST_25690_PI429285431	11.305877	P	11.754302	P	0.732842460526523	0	lncRNA	27219-1_{1..340}	lnc-NAV1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NAV1-3:1	chr1	201502576	201502915	+	lnc-NAV1-3	lnc-NAV1-3:1	ENSG00000224536.1	RP11-134G8.7	NA	NA	NA	inter
CUST_14093_PI429285431	1.2439778	A	1.4472107	A	0.868601951963017	0	lncRNA	15739-1_{1..350}	lnc-PGAM1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PGAM1-1:2	chr10	 99179059	 99179408	+	lnc-PGAM1-1	lnc-PGAM1-1:2	XLOC_008574	linc-PGAM1-1	PGAM1	NA	chr10:99169059-99189327	inter
CUST_49708_PI429285431	14.04448	P	12.873641	P	2.25142590656096	0	lncRNA	53485-1_{1..1489}	hg19_lincRNAsTranscripts_TCONS_l2_00026417 range=chr7:22549923-22551684 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026417 range=chr7:22549923-22551684 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 22549923	 22551411	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33684_PI429285431	0.87851423	A	0.88370836	A	0.99640617673179	0	lncRNA	35245-1_{1..1919}	n340456|BC042062|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2917|NULL|-1.0853500|-0.3109932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340456|BC042062|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2917|NULL|-1.0853500|-0.3109932	chr5	 44388833	 44390751	+	NA	NA	NA	NA	FGF10	NA	chr5:44378833-44388784	inter
LNCA_21_P0002906	6.344326	P	6.673337	P	0.796082028933487	0	lncRNA	ENST00000449106	NA	NA	NA	NA	XLOC_003326	NA	ENST00000449106	NA	NA	"BROAD Institute lincRNA (XLOC_003326), lincRNA [TCONS_00005881]"	chr3:171618305-171618246	hs|3q26.31	Agilent_HUMAN_G3V2	ENST00000449106	ENST00000449106	chr3	171618246	171618305	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012791	1.1217893	A	0.891354	A	1.17318887855705	0	lncRNA	ENST00000509671	NA	NA	NA	NA	XLOC_l2_011255	NA	ENST00000509671	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011255), lincRNA [TCONS_l2_00021966]"	chr4:128391674-128391615	hs|4q28.1	Agilent_HUMAN_G3V2	ENST00000509671	ENST00000509671	chr4	128391615	128391674	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29662_PI429285431	0.8950522	A	0.9083854	A	0.990800704834654	0	lncRNA	31424-1_{1..542}	n333290|AY057120|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083965|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083965|1.6165500|-0.2215261	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333290|AY057120|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083965|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083965|1.6165500|-0.2215261	chr8	104927740	104928281	+	NA	NA	NA	NA	RIMS2	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40chr8:104917740-104943211"	NA	inner
CUST_47030_PI429285431	8.948743	P	9.009303	P	0.958891841299065	0	lncRNA	51120-1_{1..1049}	"gi|224548933|ref|NR_027149.1| Homo sapiens zinc finger RNA binding protein 2 (ZFR2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224548933|ref|NR_027149.1| Homo sapiens zinc finger RNA binding protein 2 (ZFR2), transcript variant 3, non-coding RNA"	Chr19	  3851803	  3852851	-	23217	NR_027149.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0006208	4.619831	P	4.557534	P	1.04412685417282	0	lncRNA	TCONS_00016126	NA	NA	NA	NA	XLOC_007511	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007511), lincRNA [TCONS_00016126]"	chr9:110572745-110572804	hs|9q31.2	Agilent_HUMAN_G3V2	TCONS_00016126	TCONS_00016126	chr9	110572745	110572804	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_479_PI429285431	0.87861407	A	1.0076232	A	0.91445930238647	0	lncRNA	470-1_{1..130}	"transcript_id ""ENST00000426090.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426090.1"" | genecode_v17"	chr1	170556390	170556519	-	ENSG00000225545.1	ENST00000426090.1	RP11-545I10.2	RP11-545I10.2-001	NA	NA	NA	inter
CUST_48920_PI429285431	2.011888	A	1.3544557	A	1.57727290323256	0	lncRNA	52762-1_{1..621}	hg19_lincRNAsTranscripts_TCONS_l2_00018857 range=chr3:129931089-129937145 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018857 range=chr3:129931089-129937145 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	129931089	129931709	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24756_PI429285431	0.87800384	A	0.8834429	A	0.996237028684109	0	lncRNA	26300-1_{1..449}	lnc-FOXG1-6:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXG1-6:11	chr14	 27275442	 27275890	+	lnc-FOXG1-6	lnc-FOXG1-6:11	ENSG00000257842.1	NOVA1-AS1	NA	NA	NA	inter
CUST_184_PI429285431	3.6813655	P	4.0135255	P	0.794346299387205	0	lncRNA	174-1_{1..456}	"transcript_id ""ENST00000451217.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451217.1"" | genecode_v17"	chr1	 23875630	 23876085	-	ENSG00000235052.1	ENST00000451217.1	RP1-150O5.3	RP1-150O5.3-001	ID3	NA	chr1:23884409-23886322	inter
CUST_13402_PI429285431	1.533095	A	1.3106389	A	1.16671816293693	0	lncRNA	15039-1_{1..1251}	lnc-SLFN5-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLFN5-1:6	chr17	 33651673	 33652923	+	lnc-SLFN5-1	lnc-SLFN5-1:6	XLOC_012177	linc-AP2B1-2	NA	NA	NA	inter
LNCA_21_P0006425	0.8753294	A	0.8773713	A	0.998585663889387	0	lncRNA	ENST00000424241	NA	NA	NA	NA	XLOC_008003	NA	ENST00000424241	NA	NA	"BROAD Institute lincRNA (XLOC_008003), lincRNA [TCONS_00016991]"	chrX:65220854-65220913	hs|Xq12	Agilent_HUMAN_G3V2	ENST00000424241	ENST00000424241	chrX	 65220854	 65220913	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28344_PI429285431	0.88908	A	1.0835539	A	0.873891515233481	0	lncRNA	29990-1_{1..1016}	n325650|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045477|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045477|-1.0586300|-0.4068974	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325650|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045477|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045477|-1.0586300|-0.4068974	chr13	 94752705	 94753720	-	NA	NA	NA	NA	GPC6	NA	chr13:94742705-94764402	inner
CUST_37552_PI429285431	3.5674753	P	3.8007977	P	0.8506736076791	0	lncRNA	38656-1_{1..384}	n346028|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1578|NULL|-1.2854800|-0.0899430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346028|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1578|NULL|-1.2854800|-0.0899430	chr16	 15013774	 15014157	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30233_PI429285431	7.9901953	P	7.9115467	P	1.05602837516555	0	lncRNA	32008-1_{1..227}	n335101|AL110098|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250243|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250243|0.7466930|-0.3416529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335101|AL110098|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250243|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250243|0.7466930|-0.3416529	chr15	 78397566	 78397792	-	NA	NA	NA	NA	CIB2	NA	chr15:78396991-78408200	inner
CUST_30312_PI429285431	5.3275332	P	6.0639	P	0.600249083180546	0	lncRNA	32088-1_{1..213}	n335219|AY536250|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255244|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255244|0.2605810|-0.0825725	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335219|AY536250|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255244|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255244|0.2605810|-0.0825725	chr22	 23603116	 23603328	+	NA	NA	NA	NA	BCR	NA	chr22:23593116-23637298	inner
CUST_23025_PI429285431	3.3905222	P	2.8171318	A	1.48801637212142	0	lncRNA	24597-1_{1..3000}	lnc-AC008132.13.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC008132.13.1-1:1	chr22	 18845895	 18848894	+	lnc-AC008132.13.1-1	lnc-AC008132.13.1-1:1	ENSG00000161103.6	AC008103.5	LOC100287541	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0,hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00chr22:18842618-18849298"	NA	inter
CUST_19040_PI429285431	0.89489514	A	0.9004291	A	0.996171498698969	0	lncRNA	20730-1_{1..2043}	lnc-HSFY2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-HSFY2-4:1	chrY	 20566775	 20568817	-	lnc-HSFY2-4	lnc-HSFY2-4:1	ENSG00000226362	FAM41AY2	NA	NA	NA	inter
CUST_108_PI429285431	1.5320349	A	1.9572768	A	0.744713853205497	0	lncRNA	100-1_{1..413}	"transcript_id ""ENST00000455207.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455207.1"" | genecode_v17"	chr1	   334129	   334541	+	ENSG00000237094.6	ENST00000455207.1	RP4-669L17.10	RP4-669L17.10-010	LOC100288646	NA	chr1:327463-342507	inner
LNCA_21_P0014362	0.8774208	A	2.5227792	A	0.31966697252266	0	lncRNA	XR_109456	XR_109456	XR_109456	NA	NA	LOC100506643	uncharacterized LOC100506643	NA	THC2697215	NA	"PREDICTED: Homo sapiens hypothetical LOC100506643 (LOC100506643), miscRNA [XR_109456]"	chr17:31233570-31233629	hs|17q11.2	Agilent_HUMAN_G3V2	XR_109456	XR_109456	chr17	 31233570	 31233629	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004967	0.878161	A	0.8793834	A	0.999153055746405	0	lncRNA	TCONS_00012012	NA	NA	NA	NA	XLOC_005531	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005531), lincRNA [TCONS_00012012]"	chr6:164180381-164194192	hs|6q26	Agilent_HUMAN_G3V2	TCONS_00012012	TCONS_00012012	chr6	164180381	164194192	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13231_PI429285431	0.87611127	A	0.87758857	A	0.998976537765257	0	lncRNA	14858-1_{1..205}	lnc-TNFAIP3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFAIP3-5:1	chr6	137751750	137751954	+	lnc-TNFAIP3-5	lnc-TNFAIP3-5:1	XLOC_005476	linc-TNFAIP3-4	NA	NA	NA	inter
CUST_38632_PI429285431	7.9238973	P	7.98956	P	0.955506306252832	0	lncRNA	39635-1_{1..2350}	n383822|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vtm.1||1.0340800|-0.2691155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383822|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vtm.1||1.0340800|-0.2691155	chr2	233593257	233595606	+	NA	NA	NA	NA	GIGYF2	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-20.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_EEF1B2:range=chr2:207024704-2070276075'pad=0,hg19_refFlat_EEF1B2:range=chr2:207024704-2070276075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10chr2:233583257-233605607"	NA	inner
CUST_17291_PI429285431	8.761703	P	7.297723	P	2.75868359991385	0	lncRNA	19009-1_{1..907}	lnc-CDRT15L2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDRT15L2-1:2	chr17	 20692057	 20692963	+	lnc-CDRT15L2-1	lnc-CDRT15L2-1:2	XLOC_012138	linc-DHRS7B-5	NA	NA	NA	inter
CUST_20540_PI429285431	0.8764688	A	0.8782611	A	0.998758443677865	0	lncRNA	22181-1_{1..1809}	lnc-LMOD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LMOD1-2:1	chr1	201706448	201708256	-	lnc-LMOD1-2	lnc-LMOD1-2:1	ENSG00000235121.1	RP11-90L20.2	NAV1	NA	chr1:201696448-201716634	inner
LNCA_21_P0010175	0.99492323	A	0.8811737	A	1.08203677302809	0	lncRNA	ENST00000433588	NA	NA	NA	NA	XLOC_014007	NA	ENST00000433588	NA	NA	"BROAD Institute lincRNA (XLOC_014007), lincRNA [TCONS_00028871]"	chr21:16866310-16866251	hs|21q21.1	Agilent_HUMAN_G3V2	ENST00000433588	ENST00000433588	chr21	 16866251	 16866310	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28565_PI429285431	3.2762702	P	3.4627447	P	0.878750493801343	0	lncRNA	30243-1_{1..667}	n325921|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049326|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049326|-1.3742700|-0.2703452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325921|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049326|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049326|-1.3742700|-0.2703452	chr10	 91444031	 91444697	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37700_PI429285431	1.5951931	A	1.6384385	A	0.97046938051984	0	lncRNA	38794-1_{1..1010}	n346194|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1744|NULL|-1.5900600|-0.2871857	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346194|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1744|NULL|-1.5900600|-0.2871857	chr3	 30334001	 30335010	+	NA	NA	NA	NA	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00"	NA	inter
CUST_48390_PI429285431	11.489402	P	11.092864	P	1.31634531603402	0	lncRNA	52243-1_{1..1015}	hg19_lincRNAsTranscripts_TCONS_l2_00000491 range=chr1:113289871-113291621 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000491 range=chr1:113289871-113291621 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	113289871	113290885	+	NA	NA	NA	NA	LOC128322	NA	chr1:113290717-113291097	inter
CUST_148_PI429285431	0.88522	A	1.0922459	A	0.866321303616903	0	lncRNA	138-1_{1..356}	"transcript_id ""ENST00000438791.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438791.2"" | genecode_v17"	chr1	  4611795	  4612150	-	ENSG00000227169.2	ENST00000438791.2	RP1-37J18.1	RP1-37J18.1-001	NA	NA	NA	inter
LNCA_21_P0011954	0.875692	A	0.88002443	A	0.997001492889801	0	lncRNA	TCONS_l2_00014824	NA	NA	NA	NA	XLOC_l2_008214	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008214), lincRNA [TCONS_l2_00014824]"	chr2:114300303-114300244	hs|2q13	Agilent_HUMAN_G3V2	TCONS_l2_00014824	TCONS_l2_00014824	chr2	114300244	114300303	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23344_PI429285431	3.166875	P	2.893373	A	1.20873836268502	0	lncRNA	24913-1_{1..533}	lnc-ATF7IP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATF7IP2-1:1	chr16	 10625667	 10626199	+	lnc-ATF7IP2-1	lnc-ATF7IP2-1:1	ENSG00000256013.1	RP11-27M24.1	EMP2	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10chr16:10622279-10635939"	NA	inner
LNCA_21_P0009815	7.0142736	P	7.470518	P	0.728881202704211	0	lncRNA	AF161557	NA	AF161557	NA	NA	HSPC072	uncharacterized LOC29075	NA	THC2489220	NA	"BROAD Institute lincRNA (XLOC_013669), lincRNA [TCONS_00027881]"	chr20:18772445-18772386	hs|20p11.23	Agilent_HUMAN_G3V2	AF161557	AF161557	chr20	 18772386	 18772445	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44028_PI429285431	4.5411286	P	4.986631	P	0.734328551631081	0	lncRNA	48712-1_{1..3000}	"gi|237757265|ref|NR_027690.1| Homo sapiens ceramide kinase-like (CERKL), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|237757265|ref|NR_027690.1| Homo sapiens ceramide kinase-like (CERKL), transcript variant 6, non-coding RNA"	Chr2	182401399	182404398	-	375298	NR_027690.1	NA	NA	NA	NA	NA	inter
LNCA_33_P3237364	4.3114123	P	3.949665	P	1.28498124263595	0	lncRNA	XR_132715	XR_132715	XR_132715	   729032	NA	LOC729032	ribosomal protein L36 pseudogene	NA	THC2701256	NA	"PREDICTED: Homo sapiens 60S ribosomal protein L36-like (LOC729032), miscRNA [XR_132715]"	chr3:41997231-41997290	hs|3p22.1	Agilent_HUMAN_G3V2	XR_132715	XR_132715	chr3	 41997231	 41997290	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25840_PI429285431	3.5534146	P	3.454764	P	1.07077146632979	0	lncRNA	27361-1_{1..3000}	lnc-CHSY1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHSY1-5:2	chr15	101459009	101462008	-	lnc-CHSY1-5	lnc-CHSY1-5:2	ENSG00000259583.1	RP11-66B24.4	LRRK1	"hg19_refFlat_ALDH1A3:range=chr15:101420113-1014549785'pad=0,hg19_refFlat_ALDH1A3:range=chr15:101420113-1014549785'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90chr15:101459460-101469443"	NA	inter
CUST_51780_PI429285431	0.8965821	A	0.9057649	A	0.993655181975963	0	lncRNA	55330-1_{1..1484}	hg19_lincRNAsTranscripts_TCONS_l2_00012838 range=chr19:9375882-9379777 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012838 range=chr19:9375882-9379777 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	  9375882	  9377365	-	NA	NA	NA	NA	ZNF699	NA	chr19:9389109-9389777	inter
CUST_43195_PI429285431	0.8906418	A	0.90839714	A	0.987768358323941	0	lncRNA	48009-1_{1..849}	ENST00000592908 havana:sense_intronic chromosome:GRCh37:17:33826709:33837289:-1 gene:ENSG00000267074 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000592908 havana:sense_intronic chromosome:GRCh37:17:33826709:33837289:-1 gene:ENSG00000267074 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr17	 33826709	 33827557	-	ENSG00000267074	ENST00000592908	NA	NA	NA	NA	NA	inter
CUST_27228_PI429285431	0.91335416	A	0.9126918	A	1.000459218375	0	lncRNA	28773-1_{1..786}	n324364|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042471|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042471|-1.1981700|-0.4489858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324364|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042471|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042471|-1.1981700|-0.4489858	chr6	140218933	140219718	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43190_PI429285431	0.90963227	A	0.91312367	A	0.997582871903824	0	lncRNA	48004-1_{1..432}	ENST00000598146 havana:sense_intronic chromosome:GRCh37:19:38690476:38691574:1 gene:ENSG00000268499 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000598146 havana:sense_intronic chromosome:GRCh37:19:38690476:38691574:1 gene:ENSG00000268499 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 38690476	 38690907	+	ENSG00000268499	ENST00000598146	NA	NA	SIPA1L3	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-37.32;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.32;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60chr19:38680476-38699009"	NA	inner
CUST_11476_PI429285431	0.8977225	A	0.9013234	A	0.997507158619988	0	lncRNA	13042-1_{1..311}	lnc-C6orf123-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C6orf123-1:6	chr6	168225263	168225573	-	lnc-C6orf123-1	lnc-C6orf123-1:6	XLOC_005925	linc-TCP10-5	MLLT4	NA	chr6:168227671-168235454	inter
LNCA_21_P0010477	0.90538716	A	0.92861193	A	0.984030699394745	0	lncRNA	TCONS_00029899	NA	NA	NA	NA	XLOC_014351	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014351), lincRNA [TCONS_00029899]"	chr22:32904890-32904831	hs|22q12.3	Agilent_HUMAN_G3V2	TCONS_00029899	TCONS_00029899	chr22	 32904831	 32904890	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14606_PI429285431	4.094542	P	4.1958957	P	0.93215792484333	0	lncRNA	16274-1_{1..207}	lnc-FAM53A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM53A-2:1	chr4	  1553894	  1554100	-	lnc-FAM53A-2	lnc-FAM53A-2:1	XLOC_003852	linc-CTBP1-3	NA	NA	NA	inter
CUST_12523_PI429285431	0.9179554	A	0.93360144	A	0.989213586579175	0	lncRNA	14134-1_{1..348}	lnc-ZBBX-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZBBX-2:1	chr3	166674581	166674928	-	lnc-ZBBX-2	lnc-ZBBX-2:1	XLOC_003319	linc-BCHE-1	NA	NA	NA	inter
CUST_11727_PI429285431	0.8875264	A	0.8997782	A	0.991543657098253	0	lncRNA	13306-1_{1..238}	lnc-MAS1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAS1L-1:1	chr6	 29446851	 29447088	-	lnc-MAS1L-1	lnc-MAS1L-1:1	XLOC_005668	linc-OR11A1	MAS1L	NA	chr6:29454543-29455679	inter
CUST_286_PI429201921	5.8068213	P	6.0377574	P	0.85208183473703	0	lncRNA	202-3_{6001..7011}	TC07002965.hg.1	 TCONS_l2_00026593-XLOC_l2_013846 // Broad TUCP // linc-LOC389493-9 chr7:-:56947711-56950089 // chr7 // 100 // 100 // 0 // --- // 0///TCONS_l2_00027366-XLOC_l2_013846 // Broad TUCP // linc-LOC389493-9 chr7:-:56943077-56949839 // chr7 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr7:-:56943077-56949839	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00027366-XLOC_l2_013846	linc-LOC389493-9	chr7	 56943077	 56949839	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24954_PI429285431	1.3152691	A	1.2096239	A	1.07597547907879	0	lncRNA	26493-1_{1..450}	lnc-TNFRSF10B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNFRSF10B-1:1	chr8	 22931949	 22932398	-	lnc-TNFRSF10B-1	lnc-TNFRSF10B-1:1	ENSG00000253616.1	RP11-875O11.3	TNFRSF10B	NA	chr8:22921949-22926700	inter
LNCA_21_P0006770	0.89706075	A	0.9147824	A	0.987791425086914	0	lncRNA	ENST00000427247	NA	NA	NA	NA	XLOC_008844	NA	ENST00000427247	NA	NA	"BROAD Institute lincRNA (XLOC_008844), lincRNA [TCONS_00017994]"	chr10:71754494-71754435	hs|10q22.1	Agilent_HUMAN_G3V2	ENST00000427247	ENST00000427247	chr10	 71754435	 71754494	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38076_PI429285431	5.1493316	P	3.5946765	P	2.93763489262082	0	lncRNA	39152-1_{1..2770}	n381057|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001awz.2||-1.2346100|-0.3153092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381057|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001awz.2||-1.2346100|-0.3153092	chr1	 15992765	 15995534	+	NA	NA	NA	NA	DDI2	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70chr1:15982765-15987552"	NA	inter
CUST_39384_PI429285431	5.342945	P	5.413306	P	0.952399652943647	0	lncRNA	40347-1_{1..1956}	n386526|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010myu.1||0.0995556|-0.2021133	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n386526|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010myu.1||0.0995556|-0.2021133	chr9	131963593	131965548	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10"	NA	inter
CUST_40662_PI429285431	0.89056635	A	0.8911677	A	0.999583262802049	0	lncRNA	41396-1_{1..3000}	n410215|NR_037168|lncRNA|Homosapiens||RefGeneNoncode|NR_037168||-0.1412500|-0.2571264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410215|NR_037168|lncRNA|Homosapiens||RefGeneNoncode|NR_037168||-0.1412500|-0.2571264	chr8	 48100929	 48103928	+	NA	NA	NA	NA	NA	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10"	NA	inter
CUST_45977_PI429285431	0.8907274	A	0.892552	A	0.99873608307102	0	lncRNA	50268-1_{1..2469}	"gi|302129639|ref|NR_036466.1| Homo sapiens uncharacterized LOC100499405 (LOC100499405), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|302129639|ref|NR_036466.1| Homo sapiens uncharacterized LOC100499405 (LOC100499405), non-coding RNA"	Chr12	  9392599	  9395067	+	100499405	NR_036466.1	NA	NA	NA	"hg19_refFlat_PTMA:range=chr2:232573417-2325775615'pad=0,hg19_refFlat_PTMA:range=chr2:232573417-2325775615'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80"	NA	inter
CUST_10613_PI429285431	4.429143	P	4.2823057	P	1.10713971971048	0	lncRNA	12143-1_{1..425}	lnc-CCDC34-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC34-1:5	chr11	 27240206	 27240630	-	lnc-CCDC34-1	lnc-CCDC34-1:5	XLOC_009398	linc-SLC5A12	NA	NA	NA	inter
CUST_15457_PI429285431	0.91342354	A	0.90490097	A	1.00592487843615	0	lncRNA	17145-1_{1..312}	lnc-RP11-181C3.1.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-181C3.1.1-1:3	chr12	 98897538	 98897849	-	lnc-RP11-181C3.1.1-1	lnc-RP11-181C3.1.1-1:3	XLOC_010167	linc-CDK17-4	NA	NA	NA	inter
CUST_26500_PI429285431	0.9057957	A	0.9180702	A	0.991528055835822	0	lncRNA	28009-1_{1..568}	lnc-METTL19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-METTL19-1:1	chr4	  8510525	  8511092	+	lnc-METTL19-1	lnc-METTL19-1:1	ENSG00000205959.3	RP11-689P11.2	NA	NA	NA	inter
CUST_33207_PI429285431	1.34425	A	1.0288576	A	1.24435005923399	0	lncRNA	34798-1_{1..287}	n339904|AF086063|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2353|NULL|-1.3801800|-0.4068805	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n339904|AF086063|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2353|NULL|-1.3801800|-0.4068805	chr18	 60981034	 60981320	-	NA	NA	NA	NA	BCL2	NA	chr18:60971034-60986613	inner
CUST_21941_PI429285431	3.8254821	P	3.8067107	P	1.0130963588316	0	lncRNA	23549-1_{1..630}	lnc-GLDN-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLDN-2:2	chr15	 51752495	 51753124	+	lnc-GLDN-2	lnc-GLDN-2:2	ENSG00000259668.1	RP11-707P17.2	DMXL2	"hg19_refFlat_DMXL2:range=chr15:51741181-519147425'pad=0,hg19_refFlat_DMXL2:range=chr15:51741181-519147425'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10chr15:51742495-51762764"	NA	inner
CUST_46556_PI429285431	1.2103834	A	1.4512485	A	0.846237720828413	0	lncRNA	50741-1_{1..2684}	"gi|224493860|ref|NR_027132.1| Homo sapiens uncharacterized LOC145820 (LOC145820), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|224493860|ref|NR_027132.1| Homo sapiens uncharacterized LOC145820 (LOC145820), transcript variant 1, non-coding RNA"	Chr15	 95976322	 95979005	+	145820	NR_027132.1	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.81;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_26509_PI429285431	2.0752745	A	1.9288936	A	1.10678952882745	0	lncRNA	28017-1_{1..397}	lnc-GPR20-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR20-4:1	chr8	142263280	142263676	-	lnc-GPR20-4	lnc-GPR20-4:1	ENSG00000253307.1	RP11-10J21.4	NA	NA	NA	inter
LNCA_21_P0003296	9.317002	P	10.502036	P	0.43981417273665	0	lncRNA	TCONS_00007244	NA	NA	NA	NA	XLOC_003225	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003225), lincRNA [TCONS_00007244]"	chr3:120084906-120084847	hs|3q13.33	Agilent_HUMAN_G3V2	TCONS_00007244	TCONS_00007244	chr3	120084847	120084906	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23457_PI429285431	1.1067824	A	1.0050899	A	1.07303155311322	0	lncRNA	25024-1_{1..397}	lnc-MAGEB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-MAGEB1-1:1	chrX	 30690147	 30690543	+	lnc-MAGEB1-1	lnc-MAGEB1-1:1	ENSG00000229331.1	GK-IT1	GK	"hg19_refFlat_SHOX:range=chrY:541633-5695645'pad=0,hg19_refFlat_SHOX:range=chrY:541633-5695645'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SHOX:range=chrX:591633-6195645'pad=0,hg19_refFlat_SHOX:range=chrX:591633-6195645'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40chrX:30680147-30700283"	NA	inner
CUST_28835_PI429285431	0.8816609	A	0.8784156	A	1.0022520025021	0	lncRNA	30543-1_{1..337}	n326248|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090179|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090179|-1.0388200|-0.3059920	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326248|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090179|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090179|-1.0388200|-0.3059920	chr1	210465242	210465578	-	NA	NA	NA	NA	HHAT	NA	chr1:210477021-210484511	inter
CUST_29461_PI429285431	1.2302477	A	1.0648172	A	1.12150068375128	0	lncRNA	31219-1_{1..412}	n332870|AF085940|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066819_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066819_04|-1.3185100|-0.4298448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332870|AF085940|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066819_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066819_04|-1.3185100|-0.4298448	chr15	 28839837	 28840248	+	NA	NA	NA	NA	NA	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30"	NA	inter
CUST_12619_PI429285431	0.89965314	A	0.90921235	A	0.993395963674003	0	lncRNA	14234-1_{1..631}	lnc-NYAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NYAP1-1:1	chr7	100117507	100118137	+	lnc-NYAP1-1	lnc-NYAP1-1:1	XLOC_006192	linc-AGFG2	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90"	NA	inter
CUST_32253_PI429285431	0.8897996	A	0.88466054	A	1.00356847685666	0	lncRNA	33944-1_{1..341}	n338828|AF075105|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1251|NULL|-1.4111700|-0.5507236	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338828|AF075105|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1251|NULL|-1.4111700|-0.5507236	chr2	 48077475	 48077815	+	NA	NA	NA	NA	FBXO11	NA	chr2:48067475-48087816	inner
CUST_51245_PI429285431	2.6483066	A	1.8028495	A	1.79683396010568	0	lncRNA	54858-1_{1..354}	hg19_lincRNAsTranscripts_TCONS_l2_00008466 range=chr15:28577242-28579781 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008466 range=chr15:28577242-28579781 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28577242	 28577595	+	NA	NA	NA	NA	HERC2	NA	chr15:28567242-28567295	inter
LNCA_21_P0014615	0.8755934	A	0.87702423	A	0.999008715866691	0	lncRNA	ENST00000457489	XR_110568	XR_110568	NA	NA	LOC100506030	NA	ENST00000457489	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506030 (LOC100506030), miscRNA [XR_110568]"	chr5:131966340-131966281	hs|5q31.1	Agilent_HUMAN_G3V2	ENST00000457489	ENST00000457489	chr5	131966281	131966340	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012271	0.87597287	A	0.8771114	A	0.999211142452364	0	lncRNA	TCONS_l2_00017796	NA	NA	NA	NA	XLOC_l2_009405	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009405), lincRNA [TCONS_l2_00017796]"	chr22:43805672-43805731	hs|22q13.2	Agilent_HUMAN_G3V2	TCONS_l2_00017796	TCONS_l2_00017796	chr22	 43805672	 43805731	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_266_PI429285431	1.5013695	A	2.322051	A	0.566174430103044	0	lncRNA	258-1_{1..403}	"transcript_id ""ENST00000418086.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418086.1"" | genecode_v17"	chr1	 63688556	 63688958	-	ENSG00000224209.2	ENST00000418086.1	LINC00466	LINC00466-003	NA	NA	NA	inter
CUST_32464_PI429285431	0.8876023	A	0.89925766	A	0.99195366652274	0	lncRNA	34135-1_{1..1045}	n339066|BC024025|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1496|NULL|-1.0708200|-0.3718345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339066|BC024025|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1496|NULL|-1.0708200|-0.3718345	chr2	194763092	194764136	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010900	0.8767192	A	0.877653	A	0.999352948590901	0	lncRNA	TCONS_l2_00003754	NA	NA	NA	NA	XLOC_l2_002100	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002100), lincRNA [TCONS_l2_00003754]"	chr10:107249330-107249271	hs|10q25.1	Agilent_HUMAN_G3V2	TCONS_l2_00003754	TCONS_l2_00003754	chr10	107249271	107249330	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35530_PI429285431	2.267773	A	2.5251458	A	0.836610030309529	0	lncRNA	36948-1_{1..740}	n342653|AK057759|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5155|NULL|-0.7514040|-0.2796414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342653|AK057759|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5155|NULL|-0.7514040|-0.2796414	chr5	 43061496	 43062235	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39734_PI429285431	1.2992221	A	0.8768136	A	1.34016301670306	0	lncRNA	40661-1_{1..3000}	n405705|NR_002940_3|lncRNA|Homosapiens||RefGeneNoncode|NR_002940_3||8.1029800|-0.2473154	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405705|NR_002940_3|lncRNA|Homosapiens||RefGeneNoncode|NR_002940_3||8.1029800|-0.2473154	chr17	 43583248	 43586247	-	NA	NA	NA	NA	NA	"hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.01;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30"	NA	inter
CUST_38393_PI429285431	0.9007155	A	0.8929731	A	1.00538104884549	0	lncRNA	39431-1_{1..1445}	n382312|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yvf.2||0.1455800|-0.2807727	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382312|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yvf.2||0.1455800|-0.2807727	chr15	 23094330	 23095774	-	NA	NA	NA	NA	NIPA1	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30chr15:23084330-23086843"	NA	inter
CUST_16764_PI429285431	1.3822517	A	1.5977939	A	0.861222430478835	0	lncRNA	18472-1_{1..288}	lnc-MBP-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBP-1:3	chr18	 74528711	 74528998	-	lnc-MBP-1	lnc-MBP-1:3	XLOC_012895	linc-ZNF516-4	ZNF236	NA	chr18:74536116-74538957	inter
LNCA_21_P0002276	7.592297	P	7.743471	P	0.900517364051598	0	lncRNA	TCONS_00003829	NA	NA	NA	NA	XLOC_001638	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001638), lincRNA [TCONS_00003829]"	chr2:118982974-118983427	hs|2q14.2	Agilent_HUMAN_G3V2	TCONS_00003829	TCONS_00003829	chr2	118982974	118983427	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28427_PI429285431	0.8838427	A	0.88465583	A	0.999436540036292	0	lncRNA	30086-1_{1..227}	n325749|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044707|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044707|-0.9541800|-0.4225752	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325749|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044707|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044707|-0.9541800|-0.4225752	chr13	 42314549	 42314775	-	NA	NA	NA	NA	KIAA0564	NA	chr13:42304549-42325023	inner
LNCA_21_P0007533	0.8785854	A	0.905247	A	0.981689302880241	0	lncRNA	TCONS_00020354	NA	NA	NA	NA	XLOC_009684	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009684), lincRNA [TCONS_00020354]"	chr12:19826130-19826189	hs|12p12.3	Agilent_HUMAN_G3V2	TCONS_00020354	TCONS_00020354	chr12	 19826130	 19826189	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25066_PI429285431	4.9004407	P	5.140512	P	0.846703466062909	0	lncRNA	26604-1_{1..340}	lnc-CATSPER3-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CATSPER3-2:3	chr5	134509732	134510071	+	lnc-CATSPER3-2	lnc-CATSPER3-2:3	ENSG00000250513.1	CTC-349C3.1	NA	NA	NA	inter
LNCA_21_P0007231	0.87661916	A	0.8805214	A	0.99729882809385	0	lncRNA	TCONS_00019372	NA	NA	NA	NA	XLOC_009196	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009196), lincRNA [TCONS_00019372]"	chr11:69919870-69919929	hs|11q13.3	Agilent_HUMAN_G3V2	TCONS_00019372	TCONS_00019372	chr11	 69919870	 69919929	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30868_PI429285431	4.477714	P	4.9186573	P	0.736652793858693	0	lncRNA	32656-1_{1..366}	n336876|AY686869|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332095|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332095|1.8870200|-0.0585098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336876|AY686869|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332095|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332095|1.8870200|-0.0585098	chr14	106330024	106330389	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29836_PI429285431	1.2776322	A	2.9309907	A	0.317899246048768	0	lncRNA	31599-1_{1..894}	n333717|K03208|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191424|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191424|2.8538400|-0.1165514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333717|K03208|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191424|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191424|2.8538400|-0.1165514	chr12	 11544476	 11545369	-	NA	NA	NA	NA	PRB2	NA	chr12:11544474-11548498	inner
CUST_818_PI429285431	3.3942204	A	2.6839225	A	1.63614192680347	0	lncRNA	811-1_{1..775}	"transcript_id ""ENST00000605056.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605056.1"" | genecode_v17"	chr2	 28648812	 28649586	+	ENSG00000270210.1	ENST00000605056.1	RP11-373D23.3	RP11-373D23.3-001	NA	NA	NA	inter
CUST_15837_PI429285431	5.009708	P	5.397503	P	0.764296855560136	0	lncRNA	17528-1_{1..351}	lnc-FBXO25-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXO25-4:1	chr8	   928468	   928818	+	lnc-FBXO25-4	lnc-FBXO25-4:1	XLOC_006681	linc-DLGAP2-7	NA	NA	NA	inter
CUST_44350_PI429285431	2.8988197	A	2.7001963	A	1.14760280540132	0	lncRNA	48973-2_{3001..6000}	"gi|223890188|ref|NR_026892.1| Homo sapiens AFAP1 antisense RNA 1 (AFAP1-AS1), antisense RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223890188|ref|NR_026892.1| Homo sapiens AFAP1 antisense RNA 1 (AFAP1-AS1), antisense RNA"	NA	NA	NA	NA	NA	NR_026892.1	NA	NA	NA	"hg19_refFlat_AFAP1:range=chr4:7765492-78738055'pad=0,hg19_refFlat_AFAP1:range=chr4:7765492-78738055'pad=0 3'pad=0 strand=- repeatMasking=none,-102.50"	NA	Unknown
LNCA_21_P0009807	1.2207141	A	0.9258912	A	1.22673437855656	0	lncRNA	TCONS_00027767	NA	NA	NA	NA	XLOC_013356	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013356), lincRNA [TCONS_00027767]"	chr19:45248399-45248340	hs|19q13.32	Agilent_HUMAN_G3V2	TCONS_00027767	TCONS_00027767	chr19	 45248340	 45248399	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002059	2.743164	A	2.7258239	A	1.01209176276711	0	lncRNA	ENST00000420724	NA	AL080233	NA	Hs.607844	XLOC_002135	NA	ENST00000420724	NA	NA	"BROAD Institute lincRNA (XLOC_002135), lincRNA [TCONS_00003308]"	chr2:65829055-65828996	hs|2p14	Agilent_HUMAN_G3V2	ENST00000420724	ENST00000420724	chr2	 65828996	 65829055	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13498_PI429285431	1.3421745	A	1.8462058	A	0.705133681843687	0	lncRNA	15138-1_{1..1203}	lnc-AC006035.2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AC006035.2-2:2	chr7	 15735961	 15737163	+	lnc-AC006035.2-2	lnc-AC006035.2-2:2	XLOC_005991	linc-LOC100129335-2	MEOX2	NA	chr7:15725961-15726308	inter
CUST_40406_PI429285431	0.92344934	A	0.9296982	A	0.995677987205557	0	lncRNA	41192-2_{3001..6000}	n409269|NR_033441|lncRNA|Homosapiens||RefGeneNoncode|NR_033441||6.6855000|-0.2982223	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409269|NR_033441|lncRNA|Homosapiens||RefGeneNoncode|NR_033441||6.6855000|-0.2982223	chr6	114260319	114263318	-	NA	NA	NA	NA	HDAC2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10chr6:114257320-114292359"	NA	inter
CUST_29658_PI429285431	6.922621	P	7.0913024	P	0.889655440409997	0	lncRNA	31420-1_{1..690}	n333285|AY046564|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083801|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083801|-1.1748700|-0.1737003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333285|AY046564|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083801|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083801|-1.1748700|-0.1737003	chr1	 11863085	 11863774	-	NA	NA	NA	NA	MTHFR	NA	chr1:11853085-11866160	inner
CUST_13768_PI429285431	1.4876268	A	0.9104176	A	1.49196035479194	0	lncRNA	15411-1_{1..517}	lnc-RNASEH1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNASEH1-1:2	chr2	  3621725	  3622241	-	lnc-RNASEH1-1	lnc-RNASEH1-1:2	XLOC_001953	linc-RNASEH1-3	RPS7	NA	chr2:3622853-3628509	inter
CUST_34124_PI429285431	0.9078762	A	0.93055093	A	0.984405941163092	0	lncRNA	35646-1_{1..3000}	n340960|AK128569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3425|NULL|-0.8796990|-0.2421562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340960|AK128569|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3425|NULL|-0.8796990|-0.2421562	chr11	  7448496	  7451495	-	NA	NA	NA	NA	SYT9	NA	chr11:7438496-7490276	inner
CUST_17494_PI429285431	7.2186093	P	6.9893	P	1.17227358096452	0	lncRNA	19221-1_{1..3000}	lnc-C6orf123-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-C6orf123-2:1	chr6	168096884	168099883	-	lnc-C6orf123-2	lnc-C6orf123-2:1	XLOC_005923	linc-TCP10-2	NA	NA	NA	inter
CUST_45373_PI429285431	0.9042077	A	0.90943736	A	0.996381638021582	0	lncRNA	49807-1_{1..2018}	"gi|226423898|ref|NR_027471.1| Homo sapiens uncharacterized LOC440173 (LOC440173), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|226423898|ref|NR_027471.1| Homo sapiens uncharacterized LOC440173 (LOC440173), non-coding RNA"	Chr9	 89623366	 89625383	-	440173	NR_027471.1	NA	NA	NA	NA	NA	inter
CUST_19701_PI429285431	6.8055506	P	6.6788816	P	1.09177003033629	0	lncRNA	21358-2_{3001..3796}	lnc-NEK3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NEK3-1:3	chr13	 52868642	 52869437	-	lnc-NEK3-1	lnc-NEK3-1:3	ENSG00000217576.4	RP11-64P12.8	LOC100652836	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30chr13:52863953-52875692"	NA	inter
CUST_49202_PI429285431	0.91452795	A	0.93241876	A	0.987675610589081	0	lncRNA	53023-4_{9001..12000}	hg19_lincRNAsTranscripts_TCONS_l2_00020851 range=chr4:159178384-159202705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020851 range=chr4:159178384-159202705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	159187384	159190383	+	NA	NA	NA	NA	TMEM144	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.81;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60chr4:159168384-159176439"	NA	inter
CUST_33616_PI429285431	4.846095	P	4.5666533	P	1.21372510122098	0	lncRNA	35181-1_{1..318}	n340375|AF056438|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2836|NULL|-1.2150300|-0.4313215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340375|AF056438|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2836|NULL|-1.2150300|-0.4313215	chr5	 10342924	 10343241	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21316_PI429285431	0.9205901	A	1.3739209	A	0.730354704786948	0	lncRNA	22939-1_{1..705}	lnc-NHLH2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NHLH2-2:1	chr1	116560073	116560777	-	lnc-NHLH2-2	lnc-NHLH2-2:1	ENSG00000237993.1	RP11-159M11.2	SLC22A15	NA	chr1:116550073-116570326	inner
CUST_22271_PI429285431	5.3178015	P	4.777664	P	1.45411109875491	0	lncRNA	23872-1_{1..465}	lnc-BANP-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BANP-2:2	chr16	 88228673	 88229137	+	lnc-BANP-2	lnc-BANP-2:2	ENSG00000260420.1	LA16c-444G7.2	NA	NA	NA	inter
CUST_19251_PI429285431	1.453797	A	1.3580933	A	1.06858650290065	0	lncRNA	20920-1_{1..376}	lnc-FAM212B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FAM212B-1:1	chr1	112399440	112399815	-	lnc-FAM212B-1	lnc-FAM212B-1:1	ENSG00000232558.1	KCND3-IT1	KCND3	NA	chr1:112389440-112409527	inner
CUST_9822_PI429285431	1.067407	A	1.1238301	A	0.961645391012337	0	lncRNA	11340-1_{1..293}	lnc-SALL1-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SALL1-6:3	chr16	 51543822	 51544114	-	lnc-SALL1-6	lnc-SALL1-6:3	XLOC_011938	linc-SALL1-5	NA	NA	NA	inter
CUST_36890_PI429285431	2.2840776	A	1.1213026	A	2.23887657910664	0	lncRNA	38049-1_{1..1106}	n345362|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_911|NULL|-1.3707800|-0.3138479	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345362|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_911|NULL|-1.3707800|-0.3138479	chr18	 48553197	 48554302	+	NA	NA	NA	NA	SMAD4	NA	chr18:48556583-48565035	inter
CUST_34729_PI429285431	6.491037	P	6.5969667	P	0.929205951724696	0	lncRNA	36174-2_{3001..4963}	n341635|BC046445|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4106|NULL|-0.2852130|-0.1103799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341635|BC046445|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4106|NULL|-0.2852130|-0.1103799	chr8	144663531	144665493	+	NA	NA	NA	NA	C8orf73	"hg19_refFlat_EEF1D:range=chr8:144661962-1446690155'pad=0,hg19_refFlat_EEF1D:range=chr8:144661962-1446690155'pad=0 3'pad=0 strand=- repeatMasking=none,-104.00;hg19_refFlat_EEF1D:range=chr8:144661962-1446722515'pad=0,hg19_refFlat_EEF1D:range=chr8:144661962-1446722515'pad=0 3'pad=0 strand=- repeatMasking=none,-104.00chr8:144650531-144654928"	NA	inner
CUST_1076_PI429285431	4.282597	P	4.211932	P	1.05020065458214	0	lncRNA	1065-1_{1..322}	"transcript_id ""ENST00000440802.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440802.1"" | genecode_v17"	chr2	133043368	133043689	-	ENSG00000230803.1	ENST00000440802.1	AC097532.2	AC097532.2-001	NA	NA	NA	inter
CUST_28566_PI429285431	1.4419677	A	1.9538016	A	0.701330366063252	0	lncRNA	30244-1_{1..891}	n325923|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049215|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049215|-1.2268400|-0.3344162	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325923|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049215|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049215|-1.2268400|-0.3344162	chr10	 89092660	 89093550	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14682_PI429285431	4.0091243	P	3.299577	A	1.63529090238161	0	lncRNA	16351-1_{1..775}	lnc-HPCAL1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HPCAL1-1:3	chr2	 10594139	 10594913	+	lnc-HPCAL1-1	lnc-HPCAL1-1:3	XLOC_001342	linc-ATP6V1C2-4	ODC1	NA	chr2:10584139-10588453	inter
CUST_32473_PI429285431	0.8909764	A	0.9028533	A	0.991801353984773	0	lncRNA	34142-1_{1..2379}	n339075|AK124033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1505|NULL|0.0430026|-0.2987198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339075|AK124033|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1505|NULL|0.0430026|-0.2987198	chr16	 11027759	 11030137	+	NA	NA	NA	NA	CIITA	NA	chr16:11017759-11018840	inner
LNCA_21_P0009236	0.8791423	A	0.8873501	A	0.994326939499116	0	lncRNA	TCONS_00025349	NA	NA	NA	NA	XLOC_012169	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012169), lincRNA [TCONS_00025349]"	chr17:30738348-30738407	hs|17q11.2	Agilent_HUMAN_G3V2	TCONS_00025349	TCONS_00025349	chr17	 30738348	 30738407	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011984	0.8782934	A	0.8855286	A	0.994997495929194	0	lncRNA	TCONS_l2_00015065	NA	NA	NA	NA	XLOC_l2_008405	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008405), lincRNA [TCONS_l2_00015065]"	chr2:200732207-200732148	hs|2q33.1	Agilent_HUMAN_G3V2	TCONS_l2_00015065	TCONS_l2_00015065	chr2	200732148	200732207	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3307887	2.0142088	A	2.5181568	A	0.705174396845677	0	lncRNA	XR_108727	XR_108727	XR_108727	100128653	Hs.656985	LOC100128653	uncharacterized LOC100128653	NA	THC2479599	NA	"PREDICTED: Homo sapiens hypothetical LOC100128653 (LOC100128653), miscRNA [XR_108727]"	chr7:1573949-1573890	hs|7p22.3	Agilent_HUMAN_G3V2	XR_108727	XR_108727	chr7	  1573890	  1573949	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13561_PI429285431	7.547059	P	7.463498	P	1.05963029772323	0	lncRNA	15202-1_{1..620}	lnc-MYC-2:37	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYC-2:37	chr8	129113226	129113845	+	lnc-MYC-2	lnc-MYC-2:37	XLOC_006925	linc-EFR3A-4	NA	NA	NA	inter
CUST_10381_PI429285431	0.87833226	A	0.8800385	A	0.998818023639622	0	lncRNA	11910-1_{1..856}	lnc-TSPAN12-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSPAN12-2:2	chr7	119867133	119867988	-	lnc-TSPAN12-2	lnc-TSPAN12-2:2	XLOC_006582	linc-CTTNBP2-6	NA	NA	NA	inter
LNCA_21_P0002194	0.8760729	A	0.8806883	A	0.996805960335366	0	lncRNA	TCONS_00003624	NA	NA	NA	NA	XLOC_001414	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001414), lincRNA [TCONS_00003624]"	chr2:31082978-31083037	hs|2p23.1	Agilent_HUMAN_G3V2	TCONS_00003624	TCONS_00003624	chr2	 31082978	 31083037	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42302_PI429285431	0.87538064	A	1.1033335	A	0.853845613305076	0	lncRNA	44919-1_{1..72}	ENST00000516550 ncrna:snoRNA chromosome:GRCh37:1:165041710:165041781:-1 gene:ENSG00000252359 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516550 ncrna:snoRNA chromosome:GRCh37:1:165041710:165041781:-1 gene:ENSG00000252359 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	165041710	165041781	-	ENSG00000252359	ENST00000516550	NA	NA	NA	NA	NA	inter
CUST_33293_PI429285431	0.88037837	A	0.8787932	A	1.00109935996985	0	lncRNA	34876-1_{1..1377}	n340005|AK058127|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2458|NULL|1.2302400|-0.2264619	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n340005|AK058127|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2458|NULL|1.2302400|-0.2264619	chr10	 29032663	 29034039	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25283_PI429285431	0.88570726	A	0.8806616	A	1.00350350799006	0	lncRNA	26814-1_{1..299}	lnc-PIGU-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PIGU-1:1	chr20	 33029636	 33029934	-	lnc-PIGU-1	lnc-PIGU-1:1	ENSG00000236388.1	ITCH-AS1	ITCH	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00chr20:33019636-33039830"	NA	inner
CUST_24079_PI429285431	0.8805778	A	0.88908	A	0.99412405532947	0	lncRNA	25629-1_{1..2255}	lnc-MARCKS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MARCKS-1:1	chr6	114241620	114243874	+	lnc-MARCKS-1	lnc-MARCKS-1:1	ENSG00000175967.3	RP11-544L8__B.4	NA	NA	NA	inter
LNCA_21_P0012919	4.9608154	P	5.1646147	P	0.868261007016425	0	lncRNA	TCONS_l2_00023040	NA	NA	NA	NA	XLOC_l2_012162	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012162), lincRNA [TCONS_l2_00023040]"	chr5:102766073-102749593	hs|5q21.1	Agilent_HUMAN_G3V2	TCONS_l2_00023040	TCONS_l2_00023040	chr5	102749593	102766073	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27259_PI429285431	5.134134	P	5.1564274	P	0.984666171580159	0	lncRNA	28812-1_{1..2619}	n324405|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042044|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042044|-1.1349600|-0.4073104	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324405|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042044|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042044|-1.1349600|-0.4073104	chr6	123433142	123435760	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007646	4.0287848	P	4.0864363	P	0.960826934999228	0	lncRNA	TCONS_00020607	NA	NA	NA	NA	XLOC_009925	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009925), lincRNA [TCONS_00020607]"	chr12:124559509-124559568	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00020607	TCONS_00020607	chr12	124559509	124559568	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51702_PI429285431	5.138092	P	5.207556	P	0.952991994431001	0	lncRNA	55259-4_{9001..9157}	hg19_lincRNAsTranscripts_TCONS_l2_00011771 range=chr18:11638006-11677400 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011771 range=chr18:11638006-11677400 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr18	 11647006	 11647162	+	NA	NA	NA	NA	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NPIPL3:range=chr16:21413605-214364195'pad=0,hg19_refFlat_NPIPL3:range=chr16:21413605-214364195'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LOC100132247:range=chr16:22525123-225477065'pad=0,hg19_refFlat_LOC100132247:range=chr16:22525123-225477065'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ACSM1:range=chr16:20634808-207025105'pad=0,hg19_refFlat_ACSM1:range=chr16:20634808-207025105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60"	NA	inter
CUST_38856_PI429285431	7.682174	P	7.947475	P	0.832025125124676	0	lncRNA	39846-1_{1..2049}	n384711|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003klp.2||1.1299500|-0.1903844	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384711|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003klp.2||1.1299500|-0.1903844	chr5	 95187935	 95189983	+	NA	NA	NA	NA	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20"	NA	inter
CUST_22561_PI429285431	0.8894338	A	0.8975657	A	0.994379252287212	0	lncRNA	24148-1_{1..301}	lnc-ARHGDIB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ARHGDIB-1:1	chr12	 15267439	 15267739	-	lnc-ARHGDIB-1	lnc-ARHGDIB-1:1	ENSG00000256650.1	RERG-IT1	RERG	NA	chr12:15260716-15277632	inner
LNCA_21_P0007391	0.876479	A	0.8774208	A	0.999347407016836	0	lncRNA	TCONS_00019742	NA	NA	NA	NA	XLOC_009536	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009536), lincRNA [TCONS_00019742]"	chr11:103720205-103720146	hs|11q22.3	Agilent_HUMAN_G3V2	TCONS_00019742	TCONS_00019742	chr11	103720146	103720205	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46198_PI429285431	6.2542024	P	4.333074	P	3.78719157036894	0	lncRNA	50442-2_{3001..3692}	"gi|223468627|ref|NR_026745.1| Homo sapiens component of oligomeric golgi complex 6 (COG6), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223468627|ref|NR_026745.1| Homo sapiens component of oligomeric golgi complex 6 (COG6), transcript variant 3, non-coding RNA"	Chr13	 40232764	 40233455	+	57511	NR_026745.1	NA	NA	NA	NA	NA	inter
CUST_27768_PI429285431	3.4610763	P	2.8999817	A	1.47538819765771	0	lncRNA	29353-1_{1..417}	n324988|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079281|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079281|-1.3440300|-0.4677068	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324988|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079281|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079281|-1.3440300|-0.4677068	chr20	 40076087	 40076503	-	NA	NA	NA	NA	CHD6	NA	chr20:40066087-40087532	inner
CUST_35486_PI429285431	0.9300647	A	1.380928	A	0.731604928990514	0	lncRNA	36893-2_{3001..3215}	n342583|AK095239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5082|NULL|-1.0793400|-0.3218321	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342583|AK095239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5082|NULL|-1.0793400|-0.3218321	chr10	  5025257	  5025471	+	NA	NA	NA	NA	AKR1C1	"hg19_refFlat_CASP7:range=chr10:115451731-1154892995'pad=0,hg19_refFlat_CASP7:range=chr10:115451731-1154892995'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90chr10:5012257-5020158"	NA	inter
CUST_39215_PI429285431	7.0952363	P	5.882969	P	2.31701486506188	0	lncRNA	40190-1_{1..3000}	n386026|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zba.2||-1.2594100|-0.3698958	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n386026|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zba.2||-1.2594100|-0.3698958	chr11	121959810	121962809	-	NA	NA	NA	NA	BLID	NA	chr11:121986062-121986923	inter
CUST_23814_PI429285431	0.9142434	A	0.9185907	A	0.996991216750093	0	lncRNA	25378-2_{3001..3147}	lnc-LEF1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LEF1-2:1	chr4	108864277	108864423	-	lnc-LEF1-2	lnc-LEF1-2:1	ENSG00000249604.1	RP11-286E11.2	CYP2U1	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80chr4:108852717-108872411"	NA	inner
CUST_10453_PI429285431	1.2075295	A	0.9187161	A	1.22163508362886	0	lncRNA	11979-1_{1..248}	lnc-SOX17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOX17-1:1	chr8	 55293285	 55293532	+	lnc-SOX17-1	lnc-SOX17-1:1	XLOC_006798	linc-SOX17-1	NA	NA	NA	inter
CUST_15512_PI429285431	0.88944244	A	1.3763053	A	0.713575080800931	0	lncRNA	17201-1_{1..392}	lnc-SIK1-4:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIK1-4:18	chr21	 44880576	 44880967	-	lnc-SIK1-4	lnc-SIK1-4:18	XLOC_014105	linc-SIK1-2	NA	NA	NA	inter
CUST_28492_PI429285431	3.0648046	P	3.2355127	P	0.888406528651818	0	lncRNA	30160-1_{1..293}	n325835|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000032331|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000032331|-1.1750500|-0.1610207	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325835|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000032331|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000032331|-1.1750500|-0.1610207	chr11	  3167351	  3167643	+	NA	NA	NA	NA	OSBPL5	NA	chr11:3157351-3177735	inner
CUST_31108_PI429285431	5.131306	P	5.006165	P	1.09061431728643	0	lncRNA	32901-1_{1..487}	n337397|DQ656051|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393164|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393164|1.2978800|-0.1682789	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337397|DQ656051|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393164|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393164|1.2978800|-0.1682789	chrX	153297824	153298310	-	NA	NA	NA	NA	MECP2	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80chrX:153287824-153363188"	NA	inner
CUST_7445_PI429285431	1.5557125	A	0.87903416	A	1.59845523303464	0	lncRNA	9089-1_{1..543}	lnc-PRKD1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PRKD1-3:5	chr14	 29822881	 29823423	-	lnc-PRKD1-3	lnc-PRKD1-3:5	ENSG00000257522	RP11-562L8.1	NA	NA	NA	inter
CUST_47314_PI429285431	6.1912165	P	5.945749	P	1.18547685810501	0	lncRNA	51375-1_{1..1212}	"gi|161484608|ref|NR_002189.3| Homo sapiens SUMO1 pseudogene 1 (SUMO1P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|161484608|ref|NR_002189.3| Homo sapiens SUMO1 pseudogene 1 (SUMO1P1), non-coding RNA"	Chr20	 52491037	 52492248	-	391257	NR_002189.3	NA	NA	NA	NA	NA	inter
LNCA_21_P0011125	0.87218726	A	1.07829	A	0.866875827672154	0	lncRNA	TCONS_l2_00006722	NA	NA	NA	NA	XLOC_l2_003627	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003627), lincRNA [TCONS_l2_00006722]"	chr13:21929140-21929199	hs|13q12.11	Agilent_HUMAN_G3V2	TCONS_l2_00006722	TCONS_l2_00006722	chr13	 21929140	 21929199	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12930_PI429285431	2.2619407	A	1.7398766	A	1.43600831210978	0	lncRNA	14558-1_{1..789}	lnc-GBP5-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-GBP5-2:8	chr1	 90098216	 90099004	-	lnc-GBP5-2	lnc-GBP5-2:8	XLOC_000909	linc-GBP5-2	LRRC8C	NA	chr1:90098644-90108453	inter
LNCA_21_P0006650	2.2842698	A	1.495446	A	1.7276653577681	0	lncRNA	ENST00000447297	NA	NA	NA	NA	XLOC_008385	NA	ENST00000447297	NA	NA	"BROAD Institute lincRNA (XLOC_008385), lincRNA [TCONS_00017785]"	chr10:8955798-8955857	hs|10p14	Agilent_HUMAN_G3V2	ENST00000447297	ENST00000447297	chr10	  8955798	  8955857	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004991	1.7323041	A	0.9263073	A	1.74835336284459	0	lncRNA	TCONS_00012053	NA	NA	NA	NA	XLOC_005584	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005584), lincRNA [TCONS_00012053]"	chr6:3595633-3595574	hs|6p25.2	Agilent_HUMAN_G3V2	TCONS_00012053	TCONS_00012053	chr6	  3595574	  3595633	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3265_PI429285431	0.9008312	A	1.0512159	A	0.901010172860499	0	lncRNA	3243-1_{1..476}	"transcript_id ""ENST00000520749.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520749.1"" | genecode_v17"	chr8	111779092	111779567	+	ENSG00000253717.1	ENST00000520749.1	KB-1299A7.2	KB-1299A7.2-001	NA	NA	NA	inter
CUST_33297_PI429285431	0.90594715	A	0.9097341	A	0.997378528358211	0	lncRNA	34880-1_{1..546}	n340010|AF087965|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2463|NULL|-0.2977930|-0.1750934	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340010|AF087965|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2463|NULL|-0.2977930|-0.1750934	chr10	 31215452	 31215997	-	NA	NA	NA	NA	ZNF438	NA	chr10:31205452-31225972	inner
LNCA_21_P0005114	1.040568	A	0.929484	A	1.08003944261095	0	lncRNA	ENST00000526556	XR_132518	XR_132518	NA	Hs.157039	XLOC_005263	NA	ENST00000526556	THC2716572	NA	"BROAD Institute lincRNA (XLOC_005263), lincRNA [TCONS_00012478]"	chr6:33881925-33881984	hs|6p21.31	Agilent_HUMAN_G3V2	ENST00000526556	ENST00000526556	chr6	 33881925	 33881984	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51870_PI429285431	6.186447	P	6.391519	P	0.867495392328784	0	lncRNA	55422-1_{1..1187}	hg19_lincRNAsTranscripts_TCONS_l2_00012657 range=chr19:52206481-52208361 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012657 range=chr19:52206481-52208361 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 52206481	 52207667	+	NA	NA	NA	NA	HAS1	NA	chr19:52216365-52218361	inter
CUST_43661_PI429285431	2.2846918	A	0.9126023	A	2.58845188292708	0	lncRNA	48417-1_{1..3000}	"gi|341915113|ref|XR_132472.1| PREDICTED: Homo sapiens uncharacterized LOC100287813 (LOC100287813), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915113|ref|XR_132472.1| PREDICTED: Homo sapiens uncharacterized LOC100287813 (LOC100287813), misc_RNA"	NA	NA	NA	NA	NA	XR_132472.1	NA	NA	NA	"hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.91;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70"	NA	Unknown
LNCA_21_P0010701	0.90474635	A	0.92729056	A	0.984495003973978	0	lncRNA	ENST00000414199	NA	NA	NA	NA	XLOC_l2_000174	NA	ENST00000414199	THC2677682	NA	"BROAD Institute lincRNA (XLOC_l2_000174), lincRNA [TCONS_l2_00000244]"	chr1:41330042-41342172	hs|1p34.2	Agilent_HUMAN_G3V2	ENST00000414199	ENST00000414199	chr1	 41330042	 41342172	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43119_PI429285431	3.606398	P	4.200528	P	0.662443813595097	0	lncRNA	47934-1_{1..1795}	ENST00000548410 havana:3prime_overlapping_ncrna chromosome:GRCh37:12:58117544:58119448:-1 gene:ENSG00000257499 gene_biotype:3prime_overlapping_ncrna transcript_biotype:3prime_overlapping_ncrna	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,ensembl.GRCh37.72,"	>ENST00000548410 havana:3prime_overlapping_ncrna chromosome:GRCh37:12:58117544:58119448:-1 gene:ENSG00000257499 gene_biotype:3prime_overlapping_ncrna transcript_biotype:3prime_overlapping_ncrna	chr12	 58117544	 58119338	-	ENSG00000257499	ENST00000548410	NA	NA	OS9	NA	chr12:58107544-58115340	inner
LNCA_21_P0002934	5.169679	P	4.566791	P	1.51875378060889	0	lncRNA	TCONS_00005954	NA	NA	NA	NA	XLOC_002588	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002588), lincRNA [TCONS_00005954]"	chr3:16581015-16581074	hs|3p24.3	Agilent_HUMAN_G3V2	TCONS_00005954	TCONS_00005954	chr3	 16581015	 16581074	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43733_PI429285431	2.4231203	A	2.8363934	A	0.750917802405579	0	lncRNA	48478-1_{1..3000}	"gi|388453756|ref|NR_049764.1| Homo sapiens F-box protein 28 (FBXO28), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388453756|ref|NR_049764.1| Homo sapiens F-box protein 28 (FBXO28), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_049764.1	NA	NA	NA	NA	NA	Unknown
CUST_24245_PI429285431	3.4383483	P	4.417377	P	0.50732118088539	0	lncRNA	25796-1_{1..421}	lnc-CCDC28A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC28A-1:2	chr6	139018132	139018552	+	lnc-CCDC28A-1	lnc-CCDC28A-1:2	ENSG00000225177.1	RP11-390P2.4	NA	NA	NA	inter
CUST_3612_PI429285431	2.9245338	A	3.1503923	A	0.855086040896941	0	lncRNA	3582-1_{1..565}	"transcript_id ""ENST00000417359.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000417359.1"" | genecode_v17"	chr10	  8094205	  8094769	-	ENSG00000243350.1	ENST00000417359.1	RP11-379F12.3	RP11-379F12.3-002	GATA3	NA	chr10:8096667-8105219	inter
LNCA_21_P0002259	11.342978	P	11.599881	P	0.836882508818727	0	lncRNA	TCONS_00003794	NA	NA	NA	NA	XLOC_001591	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001591), lincRNA [TCONS_00003794]"	chr2:101356411-101356470	hs|2q11.2	Agilent_HUMAN_G3V2	TCONS_00003794	TCONS_00003794	chr2	101356411	101356470	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30771_PI429285431	10.035947	P	10.082128	P	0.968496674360383	0	lncRNA	32557-1_{1..315}	n336611|Z36809|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327117|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327117|1.3061100|-0.1865967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336611|Z36809|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327117|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327117|1.3061100|-0.1865967	chr15	 72494792	 72495106	-	NA	NA	NA	NA	GRAMD2	NA	chr15:72484792-72490136	inner
CUST_2667_PI429285431	0.9195709	A	1.137779	A	0.859632480533822	0	lncRNA	2653-1_{1..426}	"transcript_id ""ENST00000417838.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417838.1"" | genecode_v17"	chr6	148454945	148455370	-	ENSG00000230205.1	ENST00000417838.1	RP11-631F7.2	RP11-631F7.2-001	NA	NA	NA	inter
CUST_9391_PI429285431	0.892378	A	1.016108	A	0.91781163444679	0	lncRNA	10895-1_{1..567}	lnc-TPT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPT1-1:1	chr13	 45903875	 45904441	-	lnc-TPT1-1	lnc-TPT1-1:1	XLOC_010591	linc-KCTD4	TPT1	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50chr13:45911304-45913917"	NA	inter
CUST_33987_PI429285431	4.640705	P	3.164992	A	2.78121061314323	0	lncRNA	35524-1_{1..1551}	n340800|AK021858|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3263|NULL|-0.7647390|-0.3444553	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340800|AK021858|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3263|NULL|-0.7647390|-0.3444553	chr6	  1612576	  1614126	+	NA	NA	NA	NA	GMDS	NA	chr6:1624041-1624127	inner
LNCA_21_P0006182	0.9002916	A	1.7303174	A	0.562519182612951	0	lncRNA	TCONS_00016075	NA	NA	NA	NA	XLOC_007464	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007464), lincRNA [TCONS_00016075]"	chr9:95909947-95910133	hs|9q22.31	Agilent_HUMAN_G3V2	TCONS_00016075	TCONS_00016075	chr9	 95909947	 95910133	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1122_PI429285431	1.5204175	A	0.9109818	A	1.52566234016313	0	lncRNA	1111-1_{1..799}	"transcript_id ""ENST00000432431.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432431.1"" | genecode_v17"	chr2	145445980	145446778	-	ENSG00000234940.1	ENST00000432431.1	AC023128.1	AC023128.1-001	NA	NA	NA	inter
CUST_17393_PI429285431	0.9104209	A	0.9023711	A	1.00559529167132	0	lncRNA	19116-1_{1..3000}	lnc-LPHN3-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LPHN3-2:5	chr4	 63010852	 63013851	+	lnc-LPHN3-2	lnc-LPHN3-2:5	XLOC_003555	linc-STAP1-9	NA	NA	NA	inter
CUST_35509_PI429285431	0.9226943	A	0.9229647	A	0.999812590565719	0	lncRNA	36916-1_{1..1450}	n342612|BC053499|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5113|NULL|4.3645900|-0.3133423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342612|BC053499|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5113|NULL|4.3645900|-0.3133423	chr10	124612012	124613461	+	NA	NA	NA	NA	CUZD1	NA	chr10:124602012-124605691	inter
CUST_33385_PI429285431	0.8934556	A	0.8911068	A	1.00162939011357	0	lncRNA	34963-1_{1..894}	n340103|BC044257|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2562|NULL|-0.5752060|-0.1978907	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340103|BC044257|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2562|NULL|-0.5752060|-0.1978907	chr10	 93066720	 93067613	-	NA	NA	NA	NA	HECTD2	NA	chr10:93170096-93274520	inter
CUST_39748_PI429285431	3.8133037	P	3.7357972	P	1.0551927080963	0	lncRNA	40670-1_{1..1064}	n405886|NR_003129_2|lncRNA|Homosapiens||RefGeneNoncode|NR_003129_2||-0.9862930|-0.2768118	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405886|NR_003129_2|lncRNA|Homosapiens||RefGeneNoncode|NR_003129_2||-0.9862930|-0.2768118	chr6	  3407251	  3408314	+	NA	NA	NA	NA	SLC22A23	NA	chr6:3397251-3419587	inner
CUST_10560_PI429285431	0.87896276	A	1.127543	A	0.841724350956871	0	lncRNA	12091-1_{1..299}	lnc-RP11-22D3.1.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-22D3.1.1-1:3	chr16	 49203727	 49204025	+	lnc-RP11-22D3.1.1-1	lnc-RP11-22D3.1.1-1:3	XLOC_011713	linc-C16orf78-2	NA	NA	NA	inter
CUST_9588_PI429285431	1.0097415	A	0.9266634	A	1.05927567680316	0	lncRNA	11104-1_{1..2187}	lnc-COL4A1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL4A1-2:4	chr13	110698132	110700318	-	lnc-COL4A1-2	lnc-COL4A1-2:4	XLOC_010719	linc-IRS2-2	NA	NA	NA	inter
CUST_19115_PI429285431	3.5328307	P	3.7311206	P	0.871583083099489	0	lncRNA	20798-1_{1..3000}	lnc-PDZD8-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-PDZD8-3:1	NA	NA	     2999	NA	NA	NA	NA	NA	NA	"hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-20.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30"	NA	Unknown
CUST_17139_PI429285431	0.887345	A	0.89313775	A	0.995992821920947	0	lncRNA	18848-1_{1..1033}	lnc-TMCC1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMCC1-4:2	chr3	129995459	129996491	-	lnc-TMCC1-4	lnc-TMCC1-4:2	XLOC_003250	linc-TMCC1-1	NA	NA	NA	inter
CUST_30782_PI429285431	0.91063285	A	0.9202688	A	0.993343124247357	0	lncRNA	32569-1_{1..426}	n336636|Z47230|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327325|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327325|2.7703800|-0.0697014	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336636|Z47230|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327325|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327325|2.7703800|-0.0697014	chr14	106329408	106329833	-	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106859077	inter
CUST_3230_PI429285431	0.90850335	A	0.90685076	A	1.00114614442119	0	lncRNA	3209-1_{1..866}	"transcript_id ""ENST00000521307.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521307.1"" | genecode_v17"	chr8	 93681116	 93681981	+	ENSG00000253177.1	ENST00000521307.1	RP11-100L22.1	RP11-100L22.1-001	NA	NA	NA	inter
CUST_42780_PI429285431	10.062015	P	10.147163	P	0.942687824589372	0	lncRNA	45765-1_{1..93}	ENST00000386745 ncrna:snoRNA chromosome:GRCh37:22:39709824:39709916:-1 gene:ENSG00000209480 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000386745 ncrna:snoRNA chromosome:GRCh37:22:39709824:39709916:-1 gene:ENSG00000209480 gene_biotype:snoRNA transcript_biotype:snoRNA	chr22	 39709824	 39709916	-	ENSG00000209480	ENST00000386745	NA	NA	RPL3	NA	chr22:39708887-39715670	inner
CUST_42428_PI429285431	8.5521	P	8.472258	P	1.05690228518631	0	lncRNA	45148-1_{1..136}	ENST00000383906 ncrna:snoRNA chromosome:GRCh37:2:10586840:10586975:-1 gene:ENSG00000206633 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000383906 ncrna:snoRNA chromosome:GRCh37:2:10586840:10586975:-1 gene:ENSG00000206633 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 10586840	 10586975	-	ENSG00000206633	ENST00000383906	NA	NA	ODC1	NA	chr2:10580508-10588453	inner
LNCA_21_P0006894	6.84482	P	6.9619117	P	0.922044509429003	0	lncRNA	TCONS_00018282	NA	NA	NA	NA	XLOC_008558	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008558), lincRNA [TCONS_00018282]"	chr10:92618899-92621421	hs|10q23.31	Agilent_HUMAN_G3V2	TCONS_00018282	TCONS_00018282	chr10	 92618899	 92621421	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18108_PI429285431	0.8986516	A	0.8883035	A	1.00719854217086	0	lncRNA	19843-1_{1..885}	lnc-SLC5A2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC5A2-1:2	chr16	 31520489	 31521373	+	lnc-SLC5A2-1	lnc-SLC5A2-1:2	XLOC_011691	linc-AHSP	C16orf58	NA	chr16:31510489-31519706	inter
LNCA_21_P0012364	0.87517184	A	1.0394385	A	0.892382013131751	0	lncRNA	TCONS_l2_00018431	NA	NA	NA	NA	XLOC_l2_009613	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009613), lincRNA [TCONS_l2_00018431]"	chr3:6165847-6400633	hs|3p26.1	Agilent_HUMAN_G3V2	TCONS_l2_00018431	TCONS_l2_00018431	chr3	  6165847	  6400633	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39865_PI429285431	0.9756114	A	1.512482	A	0.689264396075835	0	lncRNA	40763-1_{1..2799}	n406529|NR_024042|lncRNA|Homosapiens||RefGeneNoncode|NR_024042||10.0074000|-0.0546625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406529|NR_024042|lncRNA|Homosapiens||RefGeneNoncode|NR_024042||10.0074000|-0.0546625	chr11	 76391209	 76394007	-	NA	NA	NA	NA	LRRC32	NA	chr11:76381209-76381791	inter
CUST_48485_PI429285431	0.8890997	A	0.88160276	A	1.00521000795826	0	lncRNA	52338-1_{1..1212}	hg19_lincRNAsTranscripts_TCONS_l2_00001843 range=chr1:230019898-230027874 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001843 range=chr1:230019898-230027874 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	230019898	230021109	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48297_PI429285431	2.5494614	A	2.6512187	A	0.931897186219922	0	lncRNA	52155-1_{1..1251}	hg19_lincRNAsTranscripts_TCONS_l2_00000123 range=chr1:16973711-16975315 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000123 range=chr1:16973711-16975315 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16973711	 16974961	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16703_PI429285431	1.3855469	A	2.2306156	A	0.556684299615874	0	lncRNA	18408-1_{1..899}	lnc-ZFP90-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP90-2:1	chr16	 68614098	 68614996	+	lnc-ZFP90-2	lnc-ZFP90-2:1	XLOC_011766	linc-CDH3-3	NA	NA	NA	inter
CUST_12475_PI429285431	2.9577093	A	3.5714123	P	0.653517149219538	0	lncRNA	14087-1_{1..374}	lnc-ZFP90-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP90-1:2	chr16	 68610029	 68610402	+	lnc-ZFP90-1	lnc-ZFP90-1:2	XLOC_011765	linc-CDH3-4	ZFP90	NA	chr16:68600029-68601039	inter
CUST_32809_PI429285431	4.3874693	P	2.8308327	A	2.94167242144058	0	lncRNA	34444-1_{1..3000}	n339455|AK056809|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1893|NULL|-0.5479550|-0.3828602	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339455|AK056809|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1893|NULL|-0.5479550|-0.3828602	chr3	120044177	120047176	-	NA	NA	NA	NA	LRRC58	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10chr3:120043576-120057197"	NA	inner
CUST_16747_PI429285431	11.14665	P	11.023131	P	1.08938884528541	0	lncRNA	18454-1_{1..435}	lnc-RP11-158I9.5.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-158I9.5.1-2:1	chr11	118795947	118796381	-	lnc-RP11-158I9.5.1-2	lnc-RP11-158I9.5.1-2:1	XLOC_009575	linc-BCL9L	NA	NA	NA	inter
CUST_14900_PI429285431	5.381594	P	6.1788197	P	0.575454712576558	0	lncRNA	16563-1_{1..279}	lnc-PLA2G4A-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLA2G4A-7:1	chr1	189119673	189119951	+	lnc-PLA2G4A-7	lnc-PLA2G4A-7:1	XLOC_000502	linc-RGS18-6	NA	NA	NA	inter
CUST_7393_PI429285431	0.91215634	A	1.0312608	A	0.920759026171083	0	lncRNA	9038-1_{1..1656}	lnc-GPR63-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GPR63-1:1	chr6	 97141717	 97143372	-	lnc-GPR63-1	lnc-GPR63-1:1	ENSG00000246665	ENST00000500007	NA	"hg19_refFlat_UFL1:range=chr6:96969750-970013795'pad=0,hg19_refFlat_UFL1:range=chr6:96969750-970013795'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10"	NA	inter
CUST_45261_PI429285431	3.6056402	P	1.8140296	A	3.462011699147	0	lncRNA	49713-1_{1..2384}	"gi|323510650|ref|NR_037874.1| Homo sapiens zinc fingers and homeoboxes 1 (ZHX1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|323510650|ref|NR_037874.1| Homo sapiens zinc fingers and homeoboxes 1 (ZHX1), transcript variant 4, non-coding RNA"	Chr8	124260690	124263073	-	11244	NR_037874.1	NA	NA	NA	NA	NA	inter
CUST_7956_PI429285431	9.895296	P	9.91731	P	0.984856885738348	0	lncRNA	9568-1_{1..2308}	lnc-WRNIP1-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRNIP1-2:7	chr6	  2283733	  2286040	+	lnc-WRNIP1-2	lnc-WRNIP1-2:7	ENSG00000250903	RP1-80B9.2	NA	NA	NA	inter
CUST_2625_PI429285431	2.2700706	A	3.331692	P	0.47909331893047	0	lncRNA	2612-1_{1..552}	"transcript_id ""ENST00000430428.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430428.1"" | genecode_v17"	chr6	132406224	132406775	+	ENSG00000236166.1	ENST00000430428.1	RP3-523C21.2	RP3-523C21.2-002	NA	NA	NA	inter
CUST_34739_PI429285431	0.88793314	A	0.89400434	A	0.995800607051256	0	lncRNA	36183-2_{3001..4156}	n341645|CR627004|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4116|NULL|-1.2714900|-0.3358989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341645|CR627004|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4116|NULL|-1.2714900|-0.3358989	chr9	  2426836	  2427991	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30366_PI429285431	2.8717842	A	1.6071881	A	2.40259936801289	0	lncRNA	32142-1_{1..330}	n335464|AY781194|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257698|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257698|1.5633100|-0.2957481	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335464|AY781194|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257698|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257698|1.5633100|-0.2957481	chr1	107937920	107938249	+	NA	NA	NA	NA	NTNG1	NA	chr1:107927920-108024475	inner
CUST_35018_PI429285431	1.9672879	A	1.239263	A	1.65636991031491	0	lncRNA	36432-1_{1..2491}	n341955|BC029871|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4436|NULL|7.6512900|-0.1268227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341955|BC029871|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4436|NULL|7.6512900|-0.1268227	chr12	 66765598	 66768088	-	NA	NA	NA	NA	GRIP1	NA	chr12:66755598-66974838	inner
LNCA_33_P3272105	1.1723125	A	1.262642	A	0.939308194240289	0	lncRNA	XR_112683	XR_112683	XR_112683	   651430	Hs.727796	FLJ38576	uncharacterized LOC651430	NA	THC2481496	NA	"PREDICTED: Homo sapiens hypothetical LOC651430 (FLJ38576), miscRNA [XR_112683]"	chr4:187112280-187112221	hs|4q35.2	Agilent_HUMAN_G3V2	XR_112683	XR_112683	chr4	187112221	187112280	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22508_PI429285431	3.145873	A	3.5287728	P	0.766894591383473	0	lncRNA	24095-1_{1..451}	lnc-LRMP-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRMP-3:1	chr12	 24989411	 24989861	+	lnc-LRMP-3	lnc-LRMP-3:1	ENSG00000256482.1	RP11-625L16.3	BCAT1	"hg19_refFlat_BCAT1:range=chr12:24970942-250559225'pad=0,hg19_refFlat_BCAT1:range=chr12:24970942-250559225'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_BCAT1:range=chr12:24970942-250548995'pad=0,hg19_refFlat_BCAT1:range=chr12:24970942-250548995'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_BCAT1:range=chr12:24970942-251018665'pad=0,hg19_refFlat_BCAT1:range=chr12:24970942-251018665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30chr12:24979411-24999492"	NA	inner
CUST_27589_PI429285431	1.4934855	A	0.90741503	A	1.50115242113755	0	lncRNA	29168-1_{1..1598}	n324792|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141402|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141402|-0.2323780|-0.2192255	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324792|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000141402|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000141402|-0.2323780|-0.2192255	chr21	 39268224	 39269821	-	NA	NA	NA	NA	KCNJ6	NA	chr21:39258224-39281570	inner
CUST_5565_PI429285431	5.2811146	P	5.1871653	P	1.0672878301521	0	lncRNA	5494-1_{1..444}	"transcript_id ""ENST00000569778.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569778.1"" | genecode_v17"	chr16	 56643413	 56643856	-	ENSG00000260823.1	ENST00000569778.1	RP11-249C24.10	RP11-249C24.10-001	MT2A	NA	chr16:56642478-56643409	inter
CUST_33084_PI429285431	1.6128277	A	3.2724533	P	0.316521279634719	0	lncRNA	34688-1_{1..2047}	n339772|AK130823|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2219|NULL|-0.9092710|-0.1476540	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339772|AK130823|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2219|NULL|-0.9092710|-0.1476540	chr4	   754921	   756967	-	NA	NA	NA	NA	PCGF3	"hg19_refFlat_PCGF3:range=chr4:727470-7598675'pad=0,hg19_refFlat_PCGF3:range=chr4:727470-7598675'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90chr4:744921-764428"	NA	inner
CUST_10686_PI429285431	4.6296444	P	4.718694	P	0.940141879781512	0	lncRNA	12220-1_{1..631}	lnc-C10orf68-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-C10orf68-6:1	chr10	 34206472	 34207102	+	lnc-C10orf68-6	lnc-C10orf68-6:1	XLOC_008447	linc-CREM-2	NA	NA	NA	inter
CUST_24726_PI429285431	1.7626922	A	2.1187851	A	0.781277569454492	0	lncRNA	26272-1_{1..450}	lnc-RP11-10A14.4.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-10A14.4.1-1:2	chr8	  9002761	  9003210	+	lnc-RP11-10A14.4.1-1	lnc-RP11-10A14.4.1-1:2	ENSG00000254340.1	RP11-10A14.3	PPP1R3B	"hg19_refFlat_PPP1R3B:range=chr8:8998304-89991615'pad=0,hg19_refFlat_PPP1R3B:range=chr8:8998304-89991615'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20chr8:8993764-9009152"	NA	inner
CUST_50648_PI429285431	9.439005	P	9.3106365	P	1.09305689721694	0	lncRNA	54327-2_{3001..4648}	hg19_lincRNAsTranscripts_TCONS_l2_00002971 range=chr10:37530905-37557274 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002971 range=chr10:37530905-37557274 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 37533905	 37535552	+	NA	NA	NA	NA	ANKRD30A	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90chr10:37520905-37521495"	NA	inter
CUST_7631_PI429285431	4.3283763	P	4.2155175	P	1.08136892215211	0	lncRNA	9263-1_{1..547}	lnc-CCDC90B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCDC90B-2:2	chr11	 82904509	 82905055	-	lnc-CCDC90B-2	lnc-CCDC90B-2:2	ENSG00000247137	RP11-727A23.5	ANKRD42	NA	chr11:82905291-82914705	inter
LNCA_21_P0004446	0.8986473	A	1.5411705	A	0.640591606454303	0	lncRNA	THC2785600	NA	NA	NA	NA	XLOC_005012	NA	NA	THC2785600	NA	"BROAD Institute lincRNA (XLOC_005012), lincRNA [TCONS_00010493]"	chr5:135236020-135235961	hs|5q31.1	Agilent_HUMAN_G3V2	THC2785600	THC2785600	chr5	135235961	135236020	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33257_PI429285431	0.90281385	A	1.3185631	A	0.749630080252865	0	lncRNA	34843-1_{1..432}	n339963|AF086369|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2416|NULL|-1.1643700|-0.3242146	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339963|AF086369|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2416|NULL|-1.1643700|-0.3242146	chr10	 12061055	 12061486	-	NA	NA	NA	NA	UPF2	NA	chr10:12051055-12071478	inner
LNCA_21_P0012598	0.9009789	A	0.9266797	A	0.982343301959569	0	lncRNA	TCONS_l2_00020599	NA	NA	NA	NA	XLOC_l2_010724	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010724), lincRNA [TCONS_l2_00020599]"	chr4:80131842-80131901	hs|4q21.21	Agilent_HUMAN_G3V2	TCONS_l2_00020599	TCONS_l2_00020599	chr4	 80131842	 80131901	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4586_PI429285431	0.92340577	A	1.3311968	A	0.753776629130226	0	lncRNA	4535-1_{1..892}	"transcript_id ""ENST00000454681.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454681.2"" | genecode_v17"	chr13	 33929343	 33930234	-	ENSG00000230490.2	ENST00000454681.2	RP11-141M1.3	RP11-141M1.3-001	NA	NA	NA	inner
LNCA_21_P0007214	0.90279853	A	0.92817223	A	0.982566052377652	0	lncRNA	TCONS_00019311	NA	NA	NA	NA	XLOC_009144	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009144), lincRNA [TCONS_00019311]"	chr11:60943450-60943509	hs|11q12.2	Agilent_HUMAN_G3V2	TCONS_00019311	TCONS_00019311	chr11	 60943450	 60943509	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003911	4.265707	P	4.331086	P	0.955694221083233	0	lncRNA	TCONS_00009182	NA	NA	NA	NA	XLOC_004195	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004195), lincRNA [TCONS_00009182]"	chr4:183795764-183795705	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00009182	TCONS_00009182	chr4	183795705	183795764	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20746_PI429285431	1.1358086	A	1.8076189	A	0.62771852893707	0	lncRNA	22380-1_{1..1022}	lnc-LYPD6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LYPD6-2:1	chr2	150704423	150705444	+	lnc-LYPD6-2	lnc-LYPD6-2:1	ENSG00000231969.1	AC144449.1	NA	NA	NA	inter
CUST_46812_PI429285431	1.3856415	A	1.7000246	A	0.804194792933053	0	lncRNA	50956-2_{3001..3708}	"gi|336391096|ref|NR_038847.1| Homo sapiens long intergenic non-protein coding RNA 672 (LINC00672), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|336391096|ref|NR_038847.1| Homo sapiens long intergenic non-protein coding RNA 672 (LINC00672), non-coding RNA"	Chr17	 37084421	 37085128	+	100505576	NR_038847.1	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70"	NA	inter
CUST_19353_PI429285431	0.9198604	A	0.9192128	A	1.00044898287678	0	lncRNA	21019-1_{1..3000}	lnc-AC142381.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AC142381.1-1:1	chr16	 32141463	 32144462	+	lnc-AC142381.1-1	lnc-AC142381.1-1:1	ENSG00000260544.1	RP11-1166P10.9	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
LNCA_21_P0013363	0.9033309	A	1.4159775	A	0.700935403396714	0	lncRNA	ENST00000443103	NA	NA	NA	NA	XLOC_l2_013256	NA	ENST00000443103	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013256), lincRNA [TCONS_l2_00027030]"	chr7:2423810-2423869	hs|7p22.3	Agilent_HUMAN_G3V2	ENST00000443103	ENST00000443103	chr7	  2423810	  2423869	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003652	0.9029494	A	0.9241839	A	0.985389155798371	0	lncRNA	THC2672208	NA	NA	NA	NA	XLOC_003694	NA	NA	THC2672208	NA	"BROAD Institute lincRNA (XLOC_003694), lincRNA [TCONS_00008256]"	chr4:135560773-135560832	hs|4q28.3	Agilent_HUMAN_G3V2	THC2672208	THC2672208	chr4	135560773	135560832	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3353747	3.4591494	P	0.9221563	A	5.80378107343637	0	lncRNA	XR_132979	XR_132979	XR_132979	100653275	NA	LOC100653275	uncharacterized LOC100653275	NA	THC2626615	NA	"PREDICTED: Homo sapiens hypothetical LOC100653275 (LOC100653275), miscRNA [XR_132979]"	chr11:133166815-133166756	hs|11q25	Agilent_HUMAN_G3V2	XR_132979	XR_132979	chr11	133166756	133166815	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15866_PI429285431	0.9021076	A	0.903469	A	0.99905679452657	0	lncRNA	17555-1_{1..619}	lnc-RP11-116D17.1.1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-116D17.1.1-6:1	chr12	116207490	116208108	+	lnc-RP11-116D17.1.1-6	lnc-RP11-116D17.1.1-6:1	XLOC_009894	linc-MAP1LC3B2-5	NA	NA	NA	inter
CUST_39937_PI429285431	12.385511	P	12.521866	P	0.909814920879637	0	lncRNA	40815-1_{1..3000}	n406883|NR_024368|lncRNA|Homosapiens||RefGeneNoncode|NR_024368||3.6335100|-0.1460730	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n406883|NR_024368|lncRNA|Homosapiens||RefGeneNoncode|NR_024368||3.6335100|-0.1460730	chr7	128281294	128284293	+	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-60.00;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-56.00;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80"	NA	inter
LNCA_21_P0010856	0.8983403	A	0.9168171	A	0.987274520622499	0	lncRNA	TCONS_l2_00003385	NA	NA	NA	NA	XLOC_l2_001851	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001851), lincRNA [TCONS_l2_00003385]"	chr10:6169180-6169121	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_l2_00003385	TCONS_l2_00003385	chr10	  6169121	  6169180	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44954_PI429285431	0.90141606	A	0.9157215	A	0.990133223809451	0	lncRNA	49465-1_{1..2911}	"gi|337756452|ref|NR_039987.1| Homo sapiens uncharacterized LOC100506050 (LOC100506050), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|337756452|ref|NR_039987.1| Homo sapiens uncharacterized LOC100506050 (LOC100506050), non-coding RNA"	Chr7	 63484794	 63487704	-	100506050	NR_039987.1	NA	NA	NA	NA	NA	inter
CUST_50222_PI429285431	4.0687547	P	4.1521864	P	0.943809959091989	0	lncRNA	53946-1_{1..856}	hg19_lincRNAsTranscripts_TCONS_l2_00029323 range=chr9:67254269-67289630 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029323 range=chr9:67254269-67289630 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 67254269	 67255124	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008662	2.335878	A	1.3848091	A	1.93330452237471	0	lncRNA	TCONS_00023483	NA	NA	NA	NA	XLOC_011329	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011329), lincRNA [TCONS_00023483]"	chr15:81701519-81701578	hs|15q25.2	Agilent_HUMAN_G3V2	TCONS_00023483	TCONS_00023483	chr15	 81701519	 81701578	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006127	8.486662	P	8.349562	P	1.09969237153954	0	lncRNA	TCONS_00015920	NA	NA	NA	NA	XLOC_007283	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007283), lincRNA [TCONS_00015920]"	chr9:12770096-12770155	hs|9p23	Agilent_HUMAN_G3V2	TCONS_00015920	TCONS_00015920	chr9	 12770096	 12770155	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39046_PI429285431	0.888268	A	1.3834262	A	0.709483874753027	0	lncRNA	40025-1_{1..3000}	n385478|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zlh.1||-1.2635000|-0.4541020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385478|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zlh.1||-1.2635000|-0.4541020	chr9	 14611069	 14614068	-	NA	NA	NA	NA	ZDHHC21	NA	chr9:14601069-14624754	inner
CUST_35395_PI429285431	1.7023194	A	2.0047784	A	0.810869132824834	0	lncRNA	36802-1_{1..912}	n342451|BC039475|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4944|NULL|-0.7919780|-0.2380507	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342451|BC039475|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4944|NULL|-0.7919780|-0.2380507	chr2	159535167	159536078	-	NA	NA	NA	NA	PKP4	NA	chr2:159525167-159537941	inner
CUST_40428_PI429285431	7.1316423	P	8.710506	P	0.3347454381476	0	lncRNA	41210-1_{1..1851}	n409305|NR_033658|lncRNA|Homosapiens||RefGeneNoncode|NR_033658||2.8560300|-0.3155007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409305|NR_033658|lncRNA|Homosapiens||RefGeneNoncode|NR_033658||2.8560300|-0.3155007	chr2	139654893	139656743	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004595	0.8884317	A	0.9029383	A	0.989995175706105	0	lncRNA	BC033330	NA	BC033330	NA	Hs.551772	XLOC_005212	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005212), lincRNA [TCONS_00011164]"	chr6:26574274-26574333	hs|6p22.2	Agilent_HUMAN_G3V2	BC033330	BC033330	chr6	 26574274	 26574333	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003763	0.88788223	A	0.9021009	A	0.990192776550026	0	lncRNA	TCONS_00008562	NA	NA	NA	NA	XLOC_004057	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004057), lincRNA [TCONS_00008562]"	chr4:120559520-120559461	hs|4q26	Agilent_HUMAN_G3V2	TCONS_00008562	TCONS_00008562	chr4	120559461	120559520	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8372_PI429285431	4.195237	P	4.308718	P	0.924355043254934	0	lncRNA	9950-1_{1..2239}	lnc-C9orf85-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C9orf85-1:1	chr9	 74383383	 74385621	+	lnc-C9orf85-1	lnc-C9orf85-1:1	ENSG00000244846	AL671309.1	TMEM2	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80chr9:74373383-74383800"	NA	inner
CUST_36892_PI429285431	6.8721023	P	6.935752	P	0.956840459801022	0	lncRNA	38051-1_{1..645}	n345364|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_913|NULL|-1.3305900|-0.2965570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345364|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_913|NULL|-1.3305900|-0.2965570	chr18	 54722300	 54722944	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11719_PI429285431	1.0785493	A	0.92356694	A	1.11340800437634	0	lncRNA	13297-1_{1..991}	lnc-QSOX2-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-QSOX2-1:11	chr9	139159230	139160220	-	lnc-QSOX2-1	lnc-QSOX2-1:11	XLOC_007895	linc-QSOX2	NA	NA	NA	inter
CUST_46406_PI429285431	5.2048874	P	4.8094125	P	1.31537567852109	0	lncRNA	50620-1_{1..2239}	"gi|334848142|ref|NR_038354.1| Homo sapiens WD repeat domain 20 (WDR20), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|334848142|ref|NR_038354.1| Homo sapiens WD repeat domain 20 (WDR20), transcript variant 9, non-coding RNA"	Chr14	102606189	102608427	+	91833	NR_038354.1	NA	NA	NA	NA	NA	inter
CUST_15557_PI429285431	0.8899443	A	0.9051051	A	0.989546357344626	0	lncRNA	17241-1_{1..788}	lnc-TTC27-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC27-1:6	chr2	 33066862	 33067649	+	lnc-TTC27-1	lnc-TTC27-1:6	XLOC_001418	linc-LTBP1	NA	NA	NA	inter
CUST_22983_PI429285431	1.1956788	A	2.2210338	A	0.491289394168108	0	lncRNA	24557-1_{1..469}	lnc-RAB18-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RAB18-2:1	chr10	 28338321	 28338789	+	lnc-RAB18-2	lnc-RAB18-2:1	ENSG00000233472.1	RP11-218D6.4	MPP7	NA	chr10:28328321-28348544	inter
CUST_48086_PI429285431	0.8774978	A	0.8820809	A	0.996828277728877	0	lncRNA	51962-1_{1..871}	"gi|310114891|ref|XR_112812.1| PREDICTED: Homo sapiens uncharacterized LOC100507336, transcript variant 1 (LOC100507336), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310114891|ref|XR_112812.1| PREDICTED: Homo sapiens uncharacterized LOC100507336, transcript variant 1 (LOC100507336), misc_RNA"	NA	NA	NA	NA	NA	XR_112812.1	NA	NA	NA	NA	NA	Unknown
CUST_33526_PI429285431	4.9366736	P	4.1009426	P	1.78476113144213	0	lncRNA	35094-1_{1..1864}	n340264|AK129723|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2725|NULL|-1.1282400|-0.2840900	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340264|AK129723|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2725|NULL|-1.1282400|-0.2840900	chr4	159091915	159093778	+	NA	NA	NA	NA	FAM198B	"hg19_refFlat_FAM198B:range=chr4:159048559-1590925275'pad=0,hg19_refFlat_FAM198B:range=chr4:159048559-1590925275'pad=0 3'pad=0 strand=- repeatMasking=none,-103.80chr4:159081915-159094202"	NA	inner
CUST_11542_PI429285431	5.6316557	P	4.996387	P	1.5532270094938	0	lncRNA	13113-1_{1..817}	lnc-COL4A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL4A1-1:1	chr13	110785437	110786253	-	lnc-COL4A1-1	lnc-COL4A1-1:1	XLOC_010720	linc-IRS2-1	NA	NA	NA	inter
CUST_31176_PI429285431	4.9624887	P	4.8192606	P	1.10437344239075	0	lncRNA	32971-1_{1..839}	n337604|X81411|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000398809|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000398809|-1.0064000|-0.1113489	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337604|X81411|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000398809|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000398809|-1.0064000|-0.1113489	chr7	154862547	154863385	-	NA	NA	NA	NA	HTR5A	"hg19_refFlat_HTR5A:range=chr7:154862610-1548761975'pad=0,hg19_refFlat_HTR5A:range=chr7:154862610-1548761975'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.70chr7:154862546-154873386"	NA	inner
CUST_30498_PI429285431	4.335945	P	4.6874375	P	0.783772847955988	0	lncRNA	32278-1_{1..572}	n335652|CR609794|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000288989|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000288989|-0.9634740|-0.1696950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335652|CR609794|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000288989|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000288989|-0.9634740|-0.1696950	chr8	145726919	145727490	-	NA	NA	NA	NA	MFSD3	"hg19_refFlat_PPP1R16A:range=chr8:145722578-1457272865'pad=0,hg19_refFlat_PPP1R16A:range=chr8:145722578-1457272865'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.70chr8:145734552-145736589"	NA	inner
CUST_16976_PI429285431	0.8903821	A	0.90565085	A	0.989472317072861	0	lncRNA	18686-1_{1..286}	lnc-MYEF2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYEF2-3:2	chr15	 48298029	 48298314	-	lnc-MYEF2-3	lnc-MYEF2-3:2	XLOC_011471	linc-SLC30A4-3	NA	NA	NA	inter
CUST_17172_PI429285431	0.90985596	A	0.91535175	A	0.996197855183215	0	lncRNA	18883-1_{1..973}	lnc-DRD5-10:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DRD5-10:7	chr4	 11791382	 11792354	+	lnc-DRD5-10	lnc-DRD5-10:7	XLOC_003457	linc-CPEB2-10	NA	NA	NA	inter
CUST_37180_PI429285431	0.8923312	A	0.8875411	A	1.00332576242621	0	lncRNA	38295-1_{1..2237}	n345614|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1163|NULL|-1.3057600|-0.3424170	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345614|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1163|NULL|-1.3057600|-0.3424170	chr4	 16240393	 16242629	+	NA	NA	NA	NA	NA	"hg19_refFlat_RPS21:range=chr20:60962395-609635225'pad=0,hg19_refFlat_RPS21:range=chr20:60962395-609635225'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20"	NA	inter
CUST_40663_PI429285431	0.8967479	A	0.9113787	A	0.989909951798864	0	lncRNA	41396-2_{3001..3510}	n410215|NR_037168|lncRNA|Homosapiens||RefGeneNoncode|NR_037168||-0.1412500|-0.2571264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410215|NR_037168|lncRNA|Homosapiens||RefGeneNoncode|NR_037168||-0.1412500|-0.2571264	chr8	 48103929	 48104438	+	NA	NA	NA	NA	NA	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10"	NA	inter
LNCA_21_P0004763	0.8753762	A	0.8789504	A	0.997525619685449	0	lncRNA	ENST00000418567	NA	NA	NA	NA	XLOC_005774	NA	ENST00000418567	NA	NA	"BROAD Institute lincRNA (XLOC_005774), lincRNA [TCONS_00011524]"	chr6:82643197-82638611	hs|6q14.1	Agilent_HUMAN_G3V2	ENST00000418567	ENST00000418567	chr6	 82638611	 82643197	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19958_PI429285431	0.8938788	A	0.8890701	A	1.00333869792467	0	lncRNA	21612-1_{1..699}	lnc-PIGL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PIGL-1:1	chr17	 16250859	 16251557	+	lnc-PIGL-1	lnc-PIGL-1:1	ENSG00000225436.1	AC005971.3	CENPV	NA	chr17:16245848-16256812	inner
CUST_39310_PI429285431	6.6973963	P	6.5496244	P	1.1078571741849	0	lncRNA	40277-1_{1..847}	n386323|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gwt.1||-0.0131193|-0.1115399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386323|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gwt.1||-0.0131193|-0.1115399	chr22	 36023039	 36023885	-	NA	NA	NA	NA	MB	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.12;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr22:36013039-36019401"	NA	inter
CUST_5284_PI429285431	1.2819562	A	1.5934952	A	0.805781730094555	0	lncRNA	5224-1_{1..448}	"transcript_id ""ENST00000560439.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560439.1"" | genecode_v17"	chr15	 87975289	 87975736	-	ENSG00000259560.1	ENST00000560439.1	RP11-648K4.2	RP11-648K4.2-001	NA	NA	NA	inter
LNCA_21_P0010357	1.8508928	A	2.4854207	A	0.644151569069491	0	lncRNA	ENST00000417782	NA	NA	NA	NA	XLOC_014220	NA	ENST00000417782	NA	NA	"BROAD Institute lincRNA (XLOC_014220), lincRNA [TCONS_00029418]"	chr22:36085361-36085420	hs|22q12.3	Agilent_HUMAN_G3V2	ENST00000417782	ENST00000417782	chr22	 36085361	 36085420	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006021	6.725339	P	6.2831225	P	1.35869016294428	0	lncRNA	TCONS_00015699	NA	NA	NA	NA	XLOC_007420	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007420), lincRNA [TCONS_00015699]"	chr9:84370017-84370076	hs|9q21.32	Agilent_HUMAN_G3V2	TCONS_00015699	TCONS_00015699	chr9	 84370017	 84370076	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9247_PI429285431	0.8857226	A	0.88551855	A	1.00014144668483	0	lncRNA	10757-1_{1..3000}	lnc-DBH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DBH-1:1	chr9	136570579	136573578	+	lnc-DBH-1	lnc-DBH-1:1	ENSG00000232330	ENST00000416759	SARDH	"hg19_refFlat_SARDH:range=chr9:136529011-1365992955'pad=0,hg19_refFlat_SARDH:range=chr9:136529011-1365992955'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30chr9:136560579-136580642"	NA	inner
CUST_29673_PI429285431	4.128173	P	3.4999614	P	1.54564778274457	0	lncRNA	31435-1_{1..245}	n333317|AY207475|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085264|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085264|1.2868500|-0.1411829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333317|AY207475|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085264|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085264|1.2868500|-0.1411829	chr10	103113921	103114165	+	NA	NA	NA	NA	BTRC	NA	chr10:103113825-103249199	inner
LNCA_21_P0013732	0.8763705	A	0.87730914	A	0.99934959593492	0	lncRNA	TCONS_l2_00030001	NA	NA	NA	NA	XLOC_l2_015265	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015265), lincRNA [TCONS_l2_00030001]"	chr9:90441495-90441436	hs|9q22.1	Agilent_HUMAN_G3V2	TCONS_l2_00030001	TCONS_l2_00030001	chr9	 90441436	 90441495	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_681_PI429285431	0.89775467	A	1.1112931	A	0.862419419855433	0	lncRNA	674-1_{1..839}	"transcript_id ""ENST00000589597.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589597.1"" | genecode_v17"	chr2	  6757605	  6758443	-	ENSG00000236172.2	ENST00000589597.1	AC097517.2	AC097517.2-050	NA	NA	NA	inter
CUST_7007_PI429285431	1.142873	A	1.5741681	A	0.741595759673972	0	lncRNA	6954-1_{1..1567}	"transcript_id ""ENST00000565177.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565177.1"" | genecode_v17"	chr22	 50226264	 50227830	-	ENSG00000260613.1	ENST00000565177.1	RP3-522J7.6	RP3-522J7.6-001	BRD1	NA	chr22:50216264-50218452	inter
LNCA_21_P0014471	5.7467084	P	5.2257457	P	1.43491243534163	0	lncRNA	XR_109965	XR_109965	XR_109965	NA	Hs.659540	LOC100505736	uncharacterized LOC100505736	NA	THC2629332	NA	"PREDICTED: Homo sapiens hypothetical LOC100505736 (LOC100505736), miscRNA [XR_109965]"	chr2:28371578-28371519	hs|2p23.2	Agilent_HUMAN_G3V2	XR_109965	XR_109965	chr2	 28371519	 28371578	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008822	0.8780123	A	0.8792924	A	0.999113095826373	0	lncRNA	TCONS_00023917	NA	NA	NA	NA	XLOC_011215	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011215), lincRNA [TCONS_00023917]"	chr15:39680902-39680961	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00023917	TCONS_00023917	chr15	 39680902	 39680961	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19892_PI429285431	0.89999956	A	0.889317	A	1.00743206808306	0	lncRNA	21547-1_{1..2917}	lnc-SUSD1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SUSD1-1:4	chr9	114795674	114798590	-	lnc-SUSD1-1	lnc-SUSD1-1:4	ENSG00000259953.1	RP11-4O1.2	SUSD1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90chr9:114803061-114808590"	NA	inter
CUST_8122_PI429285431	1.4776096	A	1.8713707	A	0.76114271978554	0	lncRNA	9726-1_{1..805}	lnc-C20orf197-3:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf197-3:11	chr20	 58824552	 58825356	+	lnc-C20orf197-3	lnc-C20orf197-3:11	ENSG00000228340	RP5-1043L13.1	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
LNCA_21_P0003071	0.8782336	A	0.8809365	A	0.998128246405369	0	lncRNA	TCONS_00006333	NA	NA	NA	NA	XLOC_002952	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002952), lincRNA [TCONS_00006333]"	chr3:184457287-184457346	hs|3q27.1	Agilent_HUMAN_G3V2	TCONS_00006333	TCONS_00006333	chr3	184457287	184457346	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014430	0.8779861	A	0.88095915	A	0.997941360685416	0	lncRNA	XR_109737	XR_109737	XR_109737	NA	Hs.632786	FLJ32756	uncharacterized LOC642757	NA	THC2484067	NA	"PREDICTED: Homo sapiens hypothetical LOC642757 (FLJ32756), miscRNA [XR_109737]"	chr22:47311283-47311224	hs|22q13.31	Agilent_HUMAN_G3V2	XR_109737	XR_109737	chr22	 47311224	 47311283	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003029	2.6538296	A	2.8559124	A	0.869294667588858	0	lncRNA	TCONS_00006207	NA	NA	NA	NA	XLOC_002805	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002805), lincRNA [TCONS_00006207]"	chr3:127577771-127577830	hs|3q21.3	Agilent_HUMAN_G3V2	TCONS_00006207	TCONS_00006207	chr3	127577771	127577830	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30294_PI429285431	0.8863569	A	0.89018565	A	0.997349631178038	0	lncRNA	32070-1_{1..251}	n335194|AY452673|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254764|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254764|-1.2630500|-0.2982625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335194|AY452673|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254764|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254764|-1.2630500|-0.2982625	chr7	 87342477	 87342727	-	NA	NA	NA	NA	ABCB1	NA	chr7:87332477-87342639	inner
CUST_40554_PI429285431	3.8608124	P	2.457292	A	2.6454632932975	0	lncRNA	41312-1_{1..2195}	n409709|NR_034110|lncRNA|Homosapiens||RefGeneNoncode|NR_034110||0.2614460|-0.2687996	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n409709|NR_034110|lncRNA|Homosapiens||RefGeneNoncode|NR_034110||0.2614460|-0.2687996	chr6	111804674	111806868	+	NA	NA	NA	NA	REV3L	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr6:111794674-111804414"	NA	inter
CUST_43718_PI429285431	10.42507	P	11.058432	P	0.644672344311744	0	lncRNA	48464-2_{3001..4241}	"gi|223555929|ref|NR_026817.1| Homo sapiens uncharacterized LOC148696 (LOC148696), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223555929|ref|NR_026817.1| Homo sapiens uncharacterized LOC148696 (LOC148696), non-coding RNA"	Chr1	207994724	207995964	+	148696	NR_026817.1	NA	NA	NA	NA	NA	inter
CUST_35124_PI429285431	5.073019	P	5.036091	P	1.02592694353697	0	lncRNA	36527-1_{1..1984}	n342091|AK091365|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4573|NULL|1.4580200|-0.2886100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342091|AK091365|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4573|NULL|1.4580200|-0.2886100	chr6	 97753512	 97755495	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36042_PI429285431	0.9045323	A	0.87939847	A	1.01757408185196	0	lncRNA	37362-5_{12001..15000}	n344643|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_191|NULL|-1.3262900|-0.2857767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344643|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_191|NULL|-1.3262900|-0.2857767	chr2	216487716	216490715	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_TBX1:range=chr22:19747167-197543905'pad=0,hg19_refFlat_TBX1:range=chr22:19747167-197543905'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40"	NA	inter
CUST_11775_PI429285431	4.5626936	P	4.7674026	P	0.867713692411818	0	lncRNA	13353-1_{1..384}	lnc-RBM28-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RBM28-1:1	chr7	127923988	127924371	-	lnc-RBM28-1	lnc-RBM28-1:1	XLOC_006599	linc-LRRC4-2	NA	NA	NA	inter
CUST_8917_PI429285431	1.2850237	A	0.9047294	A	1.30160734742951	0	lncRNA	10452-1_{1..628}	lnc-CRYBA4-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:7	chr22	 27061421	 27062048	+	lnc-CRYBA4-1	lnc-CRYBA4-1:7	ENSG00000225783	XLOC_014192	NA	NA	NA	inter
LNCA_21_P0004772	3.6038587	P	3.9528656	P	0.785124363638093	0	lncRNA	ENST00000452675	NA	NA	NA	NA	XLOC_005810	NA	ENST00000452675	NA	NA	"BROAD Institute lincRNA (XLOC_005810), lincRNA [TCONS_00011544]"	chr6:113948808-113948749	hs|6q21	Agilent_HUMAN_G3V2	ENST00000452675	ENST00000452675	chr6	113948749	113948808	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44547_PI429285431	9.968965	P	8.229338	P	3.33948816180206	0	lncRNA	49133-2_{3001..6000}	"gi|402478649|ref|NR_073104.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402478649|ref|NR_073104.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 3, non-coding RNA"	Chr5	 52288156	 52291155	+	3673	NR_073104.1	NA	NA	NA	"hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.21;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70"	NA	inter
LNCA_21_P0002609	2.265453	A	2.5374117	A	0.828194369697657	0	lncRNA	TCONS_00004880	NA	NA	NA	NA	XLOC_001659	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001659), lincRNA [TCONS_00004880]"	chr2:127496178-127496237	hs|2q14.3	Agilent_HUMAN_G3V2	TCONS_00004880	TCONS_00004880	chr2	127496178	127496237	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1459_PI429285431	2.3522506	A	2.7404504	A	0.764082434662065	0	lncRNA	1448-1_{1..447}	"transcript_id ""ENST00000512435.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512435.1"" | genecode_v17"	chr3	125985660	125986106	+	ENSG00000250934.1	ENST00000512435.1	RP11-71E19.1	RP11-71E19.1-002	LOC644662	NA	chr3:125985645-126010368	inter
CUST_32182_PI429285431	0.9265808	A	0.9995768	A	0.950661737020175	0	lncRNA	33881-1_{1..3000}	n338754|BC041832|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1175|NULL|-0.9954020|-0.3513717	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338754|BC041832|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1175|NULL|-0.9954020|-0.3513717	chr13	 61304309	 61307308	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008358	0.90550095	A	0.92917484	A	0.983724412153328	0	lncRNA	ENST00000554225	NA	NA	NA	NA	XLOC_010879	NA	ENST00000554225	NA	NA	"BROAD Institute lincRNA (XLOC_010879), lincRNA [TCONS_00022560]"	chr14:76729725-76729784	hs|14q24.3	Agilent_HUMAN_G3V2	ENST00000554225	ENST00000554225	chr14	 76729725	 76729784	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29021_PI429285431	4.992013	P	5.407506	P	0.749763240597417	0	lncRNA	30748-1_{1..2229}	n326508|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029438|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029438|-1.0581100|-0.3429825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326508|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029438|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029438|-1.0581100|-0.3429825	chr1	 98448890	 98451118	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18846_PI429285431	1.6797621	A	1.1720356	A	1.42180784474246	0	lncRNA	20540-1_{1..446}	lnc-BSDC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BSDC1-1:1	chr1	 32829676	 32830121	-	lnc-BSDC1-1	lnc-BSDC1-1:1	ENSG00000225828	RP4-811H24.6	BSDC1	"hg19_refFlat_TSSK3:range=chr1:32828303-328298575'pad=0,hg19_refFlat_TSSK3:range=chr1:32828303-328298575'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00chr1:32830704-32839879"	NA	inner
CUST_14099_PI429285431	0.88856304	A	0.9012786	A	0.99122497271043	0	lncRNA	15745-1_{1..790}	lnc-MYB-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYB-3:1	chr6	135381353	135382142	+	lnc-MYB-3	lnc-MYB-3:1	XLOC_005470	linc-MYB-1	HBS1L	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70chr6:135371353-135376036"	NA	inter
CUST_20842_PI429285431	0.9185465	A	0.95984393	A	0.971780622347131	0	lncRNA	22473-1_{1..518}	lnc-CD44-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CD44-2:1	chr11	 35442083	 35442600	+	lnc-CD44-2	lnc-CD44-2:1	ENSG00000255542.1	RP4-683L5.1	SLC1A2	NA	chr11:35432083-35441532	inter
CUST_26764_PI429285431	0.90983385	A	0.913639	A	0.997365946229484	0	lncRNA	28263-1_{1..279}	n323815|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058084|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058084|-1.2306700|-0.2784213	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323815|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058084|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058084|-1.2306700|-0.2784213	chrX	119135579	119135857	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1330_PI429285431	0.9107894	A	0.9118041	A	0.999296910838985	0	lncRNA	1319-1_{1..517}	"transcript_id ""ENST00000431057.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431057.1"" | genecode_v17"	chr3	 30566482	 30566998	-	ENSG00000227549.1	ENST00000431057.1	AC116035.2	AC116035.2-001	NA	NA	NA	inter
CUST_368_PI429285431	2.3160887	A	1.8569775	A	1.37469465015676	0	lncRNA	360-1_{1..914}	"transcript_id ""ENST00000426515.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426515.1"" | genecode_v17"	chr1	116706905	116707818	+	ENSG00000235933.1	ENST00000426515.1	RP5-1185H19.2	RP5-1185H19.2-001	NA	NA	NA	inter
CUST_12611_PI429285431	0.90230143	A	0.90829444	A	0.995854578096583	0	lncRNA	14224-1_{1..268}	lnc-MEIS1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MEIS1-4:2	chr2	 66312363	 66312630	+	lnc-MEIS1-4	lnc-MEIS1-4:2	XLOC_001506	linc-MEIS1-2	NA	NA	NA	inter
CUST_26962_PI429285431	0.885159	A	0.8952619	A	0.993021665794834	0	lncRNA	28484-1_{1..1013}	n324045|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053009|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053009|-0.3291440|-0.2820740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324045|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053009|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053009|-0.3291440|-0.2820740	chr9	 92103003	 92104015	-	NA	NA	NA	NA	SEMA4D	"hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30chr9:92093003-92094611"	NA	inner
CUST_11264_PI429285431	9.526974	P	7.990975	P	2.89989165570528	0	lncRNA	12823-1_{1..257}	lnc-PCDH7-13:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH7-13:1	chr4	 33521936	 33522192	+	lnc-PCDH7-13	lnc-PCDH7-13:1	XLOC_003501	linc-DTHD1-5	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70"	NA	inter
CUST_6252_PI429285431	1.0940776	A	0.9027929	A	1.14178000262282	0	lncRNA	6177-1_{1..555}	"transcript_id ""ENST00000578740.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578740.1"" | genecode_v17"	chr18	 71378564	 71379118	-	ENSG00000265380.1	ENST00000578740.1	RP11-126K15.1	RP11-126K15.1-001	NA	NA	NA	inter
CUST_48608_PI429285431	1.0351274	A	0.90327185	A	1.09570205366638	0	lncRNA	52455-1_{1..418}	hg19_lincRNAsTranscripts_TCONS_l2_00014586 range=chr2:60586692-60597169 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014586 range=chr2:60586692-60597169 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 60586692	 60587109	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004604	0.890394	A	0.90582544	A	0.989360742436161	0	lncRNA	ENST00000418834	XR_110181	XR_110181	NA	Hs.179213	XLOC_005485	NA	ENST00000418834	THC2690882	NA	"PREDICTED: Homo sapiens hypothetical LOC100507477 (LOC100507477), miscRNA [XR_110181]"	chr6:140407833-140407892	hs|6q24.1	Agilent_HUMAN_G3V2	ENST00000418834	ENST00000418834	chr6	140407833	140407892	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38207_PI429285431	0.8830171	A	0.8897152	A	0.995367991862447	0	lncRNA	39274-1_{1..1761}	n381565|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ldx.2||0.3250320|-0.3514483	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381565|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ldx.2||0.3250320|-0.3514483	chr10	120871441	120873201	+	NA	NA	NA	NA	FAM45A	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60chr10:120863611-120883202"	NA	inter
CUST_29985_PI429285431	4.0851703	P	4.2600317	P	0.885852619052107	0	lncRNA	31751-1_{1..261}	n334268|S68588|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216255|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216255|0.7800070|-0.1577191	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334268|S68588|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216255|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216255|0.7800070|-0.1577191	chr17	  6904987	  6905247	+	NA	NA	NA	NA	ALOX12	NA	chr17:6899384-6914055	inner
CUST_37364_PI429285431	13.948494	P	13.464823	P	1.39829717110764	0	lncRNA	38469-1_{1..290}	n345813|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1362|NULL|-1.3094100|-0.1985237	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345813|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1362|NULL|-1.3094100|-0.1985237	chr20	 19804150	 19804439	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28887_PI429285431	0.8802431	A	0.88029975	A	0.999960733983151	0	lncRNA	30603-1_{1..1145}	n326310|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090790|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090790|0.2177600|-0.3339491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326310|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090790|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090790|0.2177600|-0.3339491	chr1	180322308	180323452	+	NA	NA	NA	NA	ACBD6	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70chr1:180312308-180335870"	NA	inner
CUST_3268_PI429285431	0.9061137	A	0.91914546	A	0.991007746628139	0	lncRNA	3246-1_{1..424}	"transcript_id ""ENST00000519506.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519506.1"" | genecode_v17"	chr8	112111190	112111613	-	ENSG00000253103.1	ENST00000519506.1	RP11-946L20.4	RP11-946L20.4-001	NA	NA	NA	inter
CUST_62_PI429285431	2.2175355	A	1.8996153	A	1.24653224274945	0	lncRNA	61-1_{1..2998}	"transcript_id ""ENST00000379640.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000379640.1"" | genecode_v17"	chr17	 14670900	 14673897	-	ENSG00000205325.1	ENST00000379640.1	AC005863.1	AC005863.1-001	NA	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10"	NA	inter
CUST_52184_PI429285431	3.1546357	P	3.4442408	P	0.818125968478288	0	lncRNA	55702-1_{1..500}	hg19_lincRNAsTranscripts_TCONS_l2_00017657 range=chr22:25723229-25742263 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017657 range=chr22:25723229-25742263 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 25723229	 25723728	+	NA	NA	NA	NA	LRP5L	NA	chr22:25745514-25752263	inter
CUST_14147_PI429285431	5.765919	P	6.3426647	P	0.6704744681179	0	lncRNA	15798-1_{1..3000}	lnc-AC114947.1.1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC114947.1.1-2:6	chr5	 43099122	 43102121	+	lnc-AC114947.1.1-2	lnc-AC114947.1.1-2:6	XLOC_004366	linc-ZNF131-1	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-58.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00"	NA	inter
CUST_3672_PI429285431	0.88090825	A	0.8803053	A	1.00041802043872	0	lncRNA	3640-1_{1..334}	"transcript_id ""ENST00000423349.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423349.1"" | genecode_v17"	chr10	 44273010	 44273343	-	ENSG00000234973.1	ENST00000423349.1	RP11-272J7.4	RP11-272J7.4-002	NA	NA	NA	inter
CUST_32943_PI429285431	10.977802	P	10.977144	P	1.00045619487005	0	lncRNA	34564-1_{1..2357}	n339618|BX647525|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2062|NULL|3.2715000|-0.1858703	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339618|BX647525|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2062|NULL|3.2715000|-0.1858703	chr20	 30252263	 30254619	-	NA	NA	NA	NA	BCL2L1	NA	chr20:30252261-30310656	inner
CUST_44508_PI429285431	0.8839357	A	0.8789679	A	1.0034493519331	0	lncRNA	49107-1_{1..2018}	"gi|299782534|ref|NR_033832.1| Homo sapiens uncharacterized LOC340113 (LOC340113), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|299782534|ref|NR_033832.1| Homo sapiens uncharacterized LOC340113 (LOC340113), non-coding RNA"	Chr5	 32947549	 32949566	+	340113	NR_033832.1	NA	NA	NA	NA	NA	inter
CUST_1344_PI429285431	1.384074	A	2.4631243	A	0.473340312177168	0	lncRNA	1333-1_{1..610}	"transcript_id ""ENST00000415774.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415774.1"" | genecode_v17"	chr3	 41203778	 41204387	-	ENSG00000233919.1	ENST00000415774.1	RP11-372H2.1	RP11-372H2.1-001	NA	NA	NA	inter
CUST_13226_PI429285431	0.87531024	A	0.8795248	A	0.997082952493801	0	lncRNA	14854-1_{1..741}	lnc-GPC5-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPC5-4:1	chr13	 90204359	 90205099	+	lnc-GPC5-4	lnc-GPC5-4:1	XLOC_010468	linc-GPC5-3	NA	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70"	NA	inter
CUST_1329_PI429285431	1.8391266	A	2.3594995	A	0.697191603574376	0	lncRNA	1318-1_{1..515}	"transcript_id ""ENST00000437506.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437506.1"" | genecode_v17"	chr3	 28039035	 28039549	-	ENSG00000235493.1	ENST00000437506.1	AC092415.1	AC092415.1-001	NA	NA	NA	inter
CUST_4331_PI429285431	3.040654	A	2.9006379	A	1.10191741284226	0	lncRNA	4286-1_{1..448}	"transcript_id ""ENST00000553165.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553165.1"" | genecode_v17"	chr12	 79787452	 79787899	-	ENSG00000257894.1	ENST00000553165.1	RP1-78O14.1	RP1-78O14.1-002	SYT1	NA	chr12:79777452-79845788	inner
CUST_21300_PI429285431	1.9695061	A	0.8750711	A	2.13529441091165	0	lncRNA	22925-1_{1..537}	lnc-RPL27A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPL27A-1:1	chr11	  8702214	  8702750	+	lnc-RPL27A-1	lnc-RPL27A-1:1	ENSG00000254900.1	RP11-152H18.4	RPL27A	NA	chr11:8703995-8711419	inter
LNCA_21_P0011046	0.87637913	A	0.8773015	A	0.999360866168163	0	lncRNA	TCONS_l2_00005629	NA	NA	NA	NA	XLOC_l2_002963	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002963), lincRNA [TCONS_l2_00005629]"	chr12:47436568-47436627	hs|12q13.11	Agilent_HUMAN_G3V2	TCONS_l2_00005629	TCONS_l2_00005629	chr12	 47436568	 47436627	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45757_PI429285431	1.1411469	A	0.9082796	A	1.17516823073317	0	lncRNA	50103-2_{3001..4702}	"gi|310120625|ref|XR_109062.1| PREDICTED: Homo sapiens uncharacterized LOC100506258 (LOC100506258), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310120625|ref|XR_109062.1| PREDICTED: Homo sapiens uncharacterized LOC100506258 (LOC100506258), misc_RNA"	NA	NA	NA	NA	NA	XR_109062.1	NA	NA	NA	NA	NA	Unknown
CUST_31351_PI429285431	0.88071346	A	0.87811804	A	1.00180062724119	0	lncRNA	33133-1_{1..1279}	n337819|CR610663|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|202|NULL|-0.9450430|-0.2357610	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337819|CR610663|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|202|NULL|-0.9450430|-0.2357610	chr15	 61139988	 61141266	-	NA	NA	NA	NA	RORA	NA	chr15:61129988-61151267	inner
CUST_13522_PI429285431	1.6251327	A	2.0017219	A	0.77025646958494	0	lncRNA	15162-1_{1..604}	lnc-CD38-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD38-2:5	chr4	 16302974	 16303577	+	lnc-CD38-2	lnc-CD38-2:5	XLOC_003468	linc-CLRN2-4	NA	NA	NA	inter
CUST_27136_PI429285431	2.1041994	A	1.6142361	A	1.4044091492193	0	lncRNA	28672-1_{1..524}	n324252|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324257|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324257|-1.1837800|-0.2447546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324252|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324257|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324257|-1.1837800|-0.2447546	chr7	  6087259	  6087782	+	NA	NA	NA	NA	EIF2AK1	"hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90chr7:6077259-6098860"	NA	inner
CUST_44002_PI429285431	3.060583	A	3.6929984	P	0.645095473988633	0	lncRNA	48695-1_{1..1085}	"gi|374532795|ref|NR_046247.1| Homo sapiens uncharacterized LOC100505695 (LOC100505695), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|374532795|ref|NR_046247.1| Homo sapiens uncharacterized LOC100505695 (LOC100505695), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NR_046247.1	NA	NA	NA	NA	NA	Unknown
CUST_6201_PI429285431	0.890582	A	0.89476556	A	0.997104377606343	0	lncRNA	6127-1_{1..271}	"transcript_id ""ENST00000589983.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589983.1"" | genecode_v17"	chr18	 53763183	 53763453	+	ENSG00000267057.1	ENST00000589983.1	RP11-456O19.2	RP11-456O19.2-001	NA	NA	NA	inter
CUST_28244_PI429285431	0.88051367	A	1.1107727	A	0.852481818399112	0	lncRNA	29880-1_{1..2052}	n325536|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255301|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255301|-1.1302800|-0.3355631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325536|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255301|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255301|-1.1302800|-0.3355631	chr17	 67578778	 67580829	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30894_PI429285431	2.130652	A	0.9043574	A	2.33965303919084	0	lncRNA	32682-1_{1..271}	n336910|AY927540|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332702|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332702|-1.0827400|-0.1458781	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336910|AY927540|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332702|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332702|-1.0827400|-0.1458781	chr7	 74047826	 74048096	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18117_PI429285431	4.066152	P	3.8846958	P	1.13402795131205	0	lncRNA	19851-1_{1..3000}	lnc-CD47-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD47-1:2	chr3	107754645	107757644	-	lnc-CD47-1	lnc-CD47-1:2	XLOC_003209	linc-CBLB-8	CD47	NA	chr3:107761941-107767940	inter
CUST_47522_PI429285431	3.663698	P	3.9262	P	0.833640919753852	0	lncRNA	51533-1_{1..1256}	"gi|302393532|ref|NR_036498.1| Homo sapiens opioid growth factor receptor pseudogene (LOC388906), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|302393532|ref|NR_036498.1| Homo sapiens opioid growth factor receptor pseudogene (LOC388906), non-coding RNA"	Chr22	 42665759	 42667014	+	388906	NR_036498.1	NA	NA	NA	NA	NA	inter
CUST_14632_PI429285431	0.91143423	A	0.920702	A	0.993596660672349	0	lncRNA	16303-1_{1..1512}	lnc-GMPS-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GMPS-1:2	chr3	155580439	155581950	+	lnc-GMPS-1	lnc-GMPS-1:2	XLOC_002888	linc-GMPS-1	GMPS	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr3:155588325-155591520"	NA	inter
CUST_32870_PI429285431	0.87584466	A	1.1886823	A	0.805056733105825	0	lncRNA	34499-1_{1..599}	n339535|BC035333|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1976|NULL|-0.4278540|-0.1252970	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339535|BC035333|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1976|NULL|-0.4278540|-0.1252970	chr21	 45767649	 45768247	-	NA	NA	NA	NA	TRPM2	NA	chr21:45773484-45778178	inter
CUST_11374_PI429285431	4.503192	P	4.4239445	P	1.05646685084365	0	lncRNA	12938-1_{1..607}	lnc-TGFBRAP1-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGFBRAP1-6:2	chr2	105469568	105470174	-	lnc-TGFBRAP1-6	lnc-TGFBRAP1-6:2	XLOC_002241	linc-MFSD9-15	POU3F3	NA	chr2:105471969-105473471	inter
LNCA_21_P0001113	0.8776477	A	0.88082993	A	0.997796677134774	0	lncRNA	BC040893	NA	BC040893	NA	Hs.434659	XLOC_000764	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000764), lincRNA [TCONS_00000494]"	chr1:29656191-29656132	hs|1p35.3	Agilent_HUMAN_G3V2	BC040893	BC040893	chr1	 29656132	 29656191	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013299	2.2023056	A	2.8596258	A	0.63405495825623	0	lncRNA	AK056032	NA	AK056032	NA	Hs.520804	SEPT7P2	septin 7 pseudogene 2	NA	THC2471372	NA	"BROAD Institute lincRNA (XLOC_l2_013808), lincRNA [TCONS_l2_00026542]"	chr7:45765845-45765786	hs|7p12.3	Agilent_HUMAN_G3V2	AK056032	AK056032	chr7	 45765786	 45765845	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44337_PI429285431	3.6892772	P	3.7180603	P	0.980246778116577	0	lncRNA	48965-1_{1..3000}	"gi|310124580|ref|XR_110583.1| PREDICTED: Homo sapiens uncharacterized LOC285463 (LOC285463), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310124580|ref|XR_110583.1| PREDICTED: Homo sapiens uncharacterized LOC285463 (LOC285463), misc_RNA"	NA	NA	NA	NA	NA	XR_110583.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CTBP1:range=chr4:1206028-12427435'pad=0,hg19_refFlat_CTBP1:range=chr4:1206028-12427435'pad=0 3'pad=0 strand=- repeatMasking=none,-108.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CTBP1:range=chr4:1206028-12351195'pad=0,hg19_refFlat_CTBP1:range=chr4:1206028-12351195'pad=0 3'pad=0 strand=- repeatMasking=none,-108.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70"	NA	Unknown
CUST_34230_PI429285431	1.2572218	A	0.88306326	A	1.2960833862252	0	lncRNA	35740-1_{1..2134}	n341090|AK026725|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3556|NULL|-1.1331300|-0.3903999	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341090|AK026725|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3556|NULL|-1.1331300|-0.3903999	chr11	 87898746	 87900879	-	NA	NA	NA	NA	RAB38	NA	chr11:87888746-87908635	inner
CUST_21275_PI429285431	7.4033003	P	6.722407	P	1.60313208868199	0	lncRNA	22900-1_{1..374}	lnc-SP6-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SP6-2:3	chr17	 45973069	 45973442	-	lnc-SP6-2	lnc-SP6-2:3	ENSG00000264920.1	RP11-6N17.4	SP2	NA	chr17:45973516-45983135	inter
CUST_48826_PI429285431	0.9043669	A	0.8829973	A	1.01492252343549	0	lncRNA	52664-1_{1..2531}	hg19_lincRNAsTranscripts_TCONS_l2_00014354 range=chr2:243030932-243067562 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014354 range=chr2:243030932-243067562 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	243030932	243033462	+	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20"	NA	inter
CUST_49714_PI429285431	0.90637267	A	1.02336	A	0.922111216018935	0	lncRNA	53490-1_{1..1227}	hg19_lincRNAsTranscripts_TCONS_l2_00026430 range=chr7:25694737-25702372 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026430 range=chr7:25694737-25702372 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 25694737	 25695963	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14781_PI429285431	0.8875041	A	0.8995336	A	0.99169645247877	0	lncRNA	16442-1_{1..546}	lnc-PDE6B-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE6B-1:7	chr4	   578068	   578613	+	lnc-PDE6B-1	lnc-PDE6B-1:7	XLOC_003411	linc-PDE6B	NA	NA	NA	inter
LNCA_21_P0005348	1.5688525	A	0.9252281	A	1.56224898199532	0	lncRNA	TCONS_00013292	NA	NA	NA	NA	XLOC_005958	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005958), lincRNA [TCONS_00013292]"	chr7:564866-564925	hs|7p22.3	Agilent_HUMAN_G3V2	TCONS_00013292	TCONS_00013292	chr7	   564866	   564925	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19960_PI429285431	0.99313843	A	0.97871137	A	1.01005024381038	0	lncRNA	21614-1_{1..1131}	lnc-TMX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMX1-2:1	chr14	 51557342	 51558472	+	lnc-TMX1-2	lnc-TMX1-2:1	ENSG00000259055.1	RP11-1140I5.1	TRIM9	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60chr14:51547342-51562422"	NA	inner
LNCA_21_P0001848	1.7177333	A	0.9267499	A	1.73025347233819	0	lncRNA	TCONS_00002862	NA	NA	NA	NA	XLOC_001410	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001410), lincRNA [TCONS_00002862]"	chr2:30152760-30152819	hs|2p23.1	Agilent_HUMAN_G3V2	TCONS_00002862	TCONS_00002862	chr2	 30152760	 30152819	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010836	1.2491161	A	0.929353	A	1.24812558165655	0	lncRNA	TCONS_l2_00003144	NA	NA	NA	NA	XLOC_l2_001664	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001664), lincRNA [TCONS_l2_00003144]"	chr10:88511676-88511735	hs|10q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00003144	TCONS_l2_00003144	chr10	 88511676	 88511735	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29726_PI429285431	9.036239	P	8.238005	P	1.73897115223772	0	lncRNA	31488-1_{1..957}	n333398|BC008391|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087059|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087059|2.0449300|-0.1249647	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n333398|BC008391|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087059|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087059|2.0449300|-0.1249647	chr16	 11984932	 11985888	-	NA	NA	NA	NA	GSPT1	NA	chr16:11974932-12010519	inner
CUST_29438_PI429285431	16.610746	P	16.800043	P	0.877032980004703	0	lncRNA	31194-1_{1..343}	n332825|AF064848|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000065459|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000065459|-0.8022430|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332825|AF064848|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000065459|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000065459|-0.8022430|-1.0000000	chr20	 37352868	 37353210	+	NA	NA	NA	NA	SLC32A1	NA	chr20:37353105-37358015	inner
CUST_7988_PI429285431	1.1142203	A	0.90437454	A	1.15656452780064	0	lncRNA	9599-1_{1..576}	lnc-DAD1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DAD1-2:3	chr14	 22901658	 22902233	-	lnc-DAD1-2	lnc-DAD1-2:3	ENSG00000251002	AE000661.37	NA	NA	NA	inter
CUST_49377_PI429285431	10.693786	P	10.684532	P	1.00643500022655	0	lncRNA	53191-1_{1..1595}	hg19_lincRNAsTranscripts_TCONS_l2_00023084 range=chr5:125998813-126009286 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023084 range=chr5:125998813-126009286 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	125998813	126000407	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20"	NA	inter
CUST_38707_PI429285431	4.1985207	P	2.3461258	A	3.61099118889379	0	lncRNA	39702-1_{1..467}	n384134|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003aic.1||2.4524100|-0.2122226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384134|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003aic.1||2.4524100|-0.2122226	chr22	 30877276	 30877742	-	NA	NA	NA	NA	SEC14L3	NA	chr22:30867276-30868034	inter
CUST_7186_PI429285431	0.90045106	A	0.91980976	A	0.986671197458133	0	lncRNA	7461-1_{1..304}	"transcript_id ""ENST00000363509.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000363509.1"" | genecode_v17"	chr3	 56106132	 56106435	+	ENSG00000200379.1	ENST00000363509.1	RN7SKP45	RN7SKP45-201	ERC2	NA	chr3:56096132-56116435	inner
CUST_32354_PI429285431	0.88658834	A	0.8964931	A	0.993158056937276	0	lncRNA	34033-1_{1..1512}	n338938|AL713732|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1365|NULL|-1.1330400|-0.2458867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338938|AL713732|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1365|NULL|-1.1330400|-0.2458867	chr2	111901457	111902968	-	NA	NA	NA	NA	BCL2L11	NA	chr2:111891457-111912954	inner
CUST_14460_PI429285431	0.91124344	A	0.92266244	A	0.992116193854525	0	lncRNA	16123-1_{1..995}	lnc-MITF-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MITF-3:1	chr3	 70221448	 70222442	+	lnc-MITF-3	lnc-MITF-3:1	XLOC_002697	linc-GPR27-3	NA	NA	NA	inter
CUST_2115_PI429285431	5.9241867	P	6.1423044	P	0.859686347226911	0	lncRNA	2106-1_{1..638}	"transcript_id ""ENST00000507887.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507887.1"" | genecode_v17"	chr5	 25413548	 25414185	-	ENSG00000248605.1	ENST00000507887.1	CTD-2306M5.1	CTD-2306M5.1-003	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.54;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40"	NA	inter
CUST_22839_PI429285431	3.4535222	P	3.5969973	P	0.905335793965777	0	lncRNA	24418-1_{1..1183}	lnc-STOML1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STOML1-1:3	chr15	 74220118	 74221300	-	lnc-STOML1-1	lnc-STOML1-1:3	ENSG00000261801.1	RP11-941F15.1	LOXL1	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_LOXL1:range=chr15:74219125-742441785'pad=0,hg19_refFlat_LOXL1:range=chr15:74219125-742441785'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-60.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10chr15:74218789-74230301"	NA	inner
CUST_9171_PI429285431	1.9978583	A	2.5233288	A	0.694732502814516	0	lncRNA	10688-1_{1..817}	lnc-PCM1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PCM1-3:3	chr8	 17944534	 17945350	+	lnc-PCM1-3	lnc-PCM1-3:3	ENSG00000245281	CTD-2547L16.1	ASAH1	NA	chr8:17934534-17942507	inter
LNCA_21_P0014774	3.5787747	P	4.418863	P	0.558609378360871	0	lncRNA	XR_132549	XR_132549	XR_132549	NA	NA	LOC100653024	uncharacterized LOC100653024	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100653024 (LOC100653024), miscRNA [XR_132549]"	chr8:141931283-141931342	hs|8q24.3	Agilent_HUMAN_G3V2	XR_132549	XR_132549	chr8	141931283	141931342	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006391	0.8878409	A	0.9021396	A	0.990137849536529	0	lncRNA	TCONS_00016862	NA	NA	NA	NA	XLOC_007835	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007835), lincRNA [TCONS_00016862]"	chr9:118503772-118496925	hs|9q33.1	Agilent_HUMAN_G3V2	TCONS_00016862	TCONS_00016862	chr9	118496925	118503772	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47049_PI429285431	6.7033453	P	6.832671	P	0.914258664958533	0	lncRNA	51138-1_{1..2709}	"gi|296040524|ref|NR_033663.1| Homo sapiens erythropoietin receptor (EPOR), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|296040524|ref|NR_033663.1| Homo sapiens erythropoietin receptor (EPOR), transcript variant 2, non-coding RNA"	Chr19	 11487881	 11490589	-	2057	NR_033663.1	NA	NA	NA	NA	NA	inter
CUST_8915_PI429285431	3.4856806	P	3.8627357	P	0.770007765222472	0	lncRNA	10450-1_{1..569}	lnc-HES5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HES5-1:1	chr1	  2488416	  2488984	-	lnc-HES5-1	lnc-HES5-1:1	ENSG00000238164	RP3-395M20.8	TNFRSF14	NA	chr1:2487805-2495268	inner
CUST_37440_PI429285431	6.9003663	P	6.429452	P	1.38598755178373	0	lncRNA	38539-1_{1..957}	n345888|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1437|NULL|-1.3264400|-0.2214482	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345888|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1437|NULL|-1.3264400|-0.2214482	chr7	 45786858	 45787814	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32282_PI429285431	0.9193867	A	0.9005323	A	1.01315464517366	0	lncRNA	33968-1_{1..3000}	n338861|AL137337|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1285|NULL|-1.1543500|-0.3254613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n338861|AL137337|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1285|NULL|-1.1543500|-0.3254613	chr2	 64412042	 64415041	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20027_PI429285431	1.8065815	A	2.9986513	A	0.437674488910781	0	lncRNA	21680-1_{1..734}	lnc-SLC1A1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SLC1A1-2:1	chr9	  3900833	  3901566	+	lnc-SLC1A1-2	lnc-SLC1A1-2:1	ENSG00000237009.2	GLIS3-AS1	GLIS3	"hg19_refFlat_GLIS3:range=chr9:3828272-42864255'pad=0,hg19_refFlat_GLIS3:range=chr9:3828272-42864255'pad=0 3'pad=0 strand=- repeatMasking=none,-101.30;hg19_refFlat_GLIS3:range=chr9:3828272-41258645'pad=0,hg19_refFlat_GLIS3:range=chr9:3828272-41258645'pad=0 3'pad=0 strand=- repeatMasking=none,-101.30chr9:3890833-3911248"	NA	inner
CUST_44299_PI429285431	6.606432	P	6.8923874	P	0.820198266712776	0	lncRNA	48932-1_{1..1644}	"gi|334085188|ref|NR_038301.1| Homo sapiens uncharacterized LOC100505687 (LOC100505687), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|334085188|ref|NR_038301.1| Homo sapiens uncharacterized LOC100505687 (LOC100505687), transcript variant 1, non-coding RNA"	Chr3	183165439	183167082	+	100505687	NR_038301.1	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20"	NA	inter
CUST_2862_PI429285431	4.829027	P	4.6885233	P	1.1022899002513	0	lncRNA	2844-1_{1..3000}	"transcript_id ""ENST00000449307.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449307.2"" | genecode_v17"	chr7	 65992918	 65995917	-	ENSG00000229180.3	ENST00000449307.2	GS1-124K5.11	GS1-124K5.11-001	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.01;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80"	NA	inter
LNCA_21_P0003903	0.8789958	A	0.88728076	A	0.99427376109839	0	lncRNA	TCONS_00009149	NA	NA	NA	NA	XLOC_004134	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004134), lincRNA [TCONS_00009149]"	chr4:157060049-157059990	hs|4q32.1	Agilent_HUMAN_G3V2	TCONS_00009149	TCONS_00009149	chr4	157059990	157060049	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34155_PI429285431	2.0823562	A	2.6645622	A	0.667941658118877	0	lncRNA	35673-1_{1..228}	n340998|AJ011601|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3464|NULL|-1.0752600|-0.2158094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340998|AJ011601|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3464|NULL|-1.0752600|-0.2158094	chr11	 27717005	 27717232	+	NA	NA	NA	NA	BDNF	NA	chr11:27707005-27727233	inter
LNCA_21_P0011437	3.7369945	P	4.11822	P	0.767785117057515	0	lncRNA	TCONS_l2_00009701	NA	NA	NA	NA	XLOC_l2_005197	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005197), lincRNA [TCONS_l2_00009701]"	chr16:34285875-34285934	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00009701	TCONS_l2_00009701	chr16	 34285875	 34285934	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011464	1.6120688	A	1.1638144	A	1.36438840533882	0	lncRNA	TCONS_l2_00010092	NA	NA	NA	NA	XLOC_l2_005438	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005438), lincRNA [TCONS_l2_00010092]"	chr16:30309687-30309628	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00010092	TCONS_l2_00010092	chr16	 30309628	 30309687	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40518_PI429285431	3.7308524	P	2.0330138	A	3.24414566659977	0	lncRNA	41282-1_{1..1396}	n409549|NR_033934|lncRNA|Homosapiens||RefGeneNoncode|NR_033934||2.1208700|-0.2856995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409549|NR_033934|lncRNA|Homosapiens||RefGeneNoncode|NR_033934||2.1208700|-0.2856995	chr17	 45527592	 45528987	-	NA	NA	NA	NA	C17orf57	"hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70chr17:45517592-45518678"	NA	inter
LNCA_21_P0001552	2.2984009	A	0.87721497	A	2.67805563110561	0	lncRNA	TCONS_00001601	NA	NA	NA	NA	XLOC_000927	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000927), lincRNA [TCONS_00001601]"	chr1:95781447-95781388	hs|1p21.3	Agilent_HUMAN_G3V2	TCONS_00001601	TCONS_00001601	chr1	 95781388	 95781447	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33268_PI429285431	1.2185003	A	1.1358086	A	1.058992006795	0	lncRNA	34853-2_{3001..3379}	n339975|AK096685|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2428|NULL|-0.2592410|-0.4021960	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339975|AK096685|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2428|NULL|-0.2592410|-0.4021960	chr10	 14569481	 14569859	-	NA	NA	NA	NA	FAM107B	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr10:14560559-14579859"	NA	inner
CUST_20426_PI429285431	3.535725	P	3.4437897	P	1.06579893751345	0	lncRNA	22070-1_{1..374}	lnc-PPRC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPRC1-1:1	chr10	103881087	103881460	+	lnc-PPRC1-1	lnc-PPRC1-1:1	ENSG00000228091.1	RP11-302K17.7	LDB1	NA	chr10:103871087-103880210	inter
CUST_26253_PI429285431	4.5282683	P	4.201846	P	1.25390000338871	0	lncRNA	27760-1_{1..1351}	lnc-TRDMT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-TRDMT1-1:1	chr10	 17268855	 17270205	-	lnc-TRDMT1-1	lnc-TRDMT1-1:1	ENSG00000229124.1	RP11-124N14.4	VIM	NA	chr10:17270258-17278897	inter
CUST_10764_PI429285431	7.1257796	P	7.2453337	P	0.920472100960337	0	lncRNA	12300-1_{1..777}	lnc-SYF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYF2-1:1	chr1	 25594231	 25595007	-	lnc-SYF2-1	lnc-SYF2-1:1	XLOC_000746	linc-C1orf63	RHD	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30chr1:25598981-25604376"	NA	inter
CUST_35458_PI429285431	8.862476	P	6.453806	P	5.30984592804775	0	lncRNA	36861-3_{6001..9000}	n342531|D83077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5027|NULL|21.1024000|-0.3938899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n342531|D83077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5027|NULL|21.1024000|-0.3938899	chr21	 38461246	 38464245	+	NA	NA	NA	NA	TTC3	NA	chr21:38445571-38575408	inner
CUST_39202_PI429285431	5.40886	P	5.429013	P	0.986128118563175	0	lncRNA	40177-1_{1..571}	n385983|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xkk.1||-0.3175760|-0.4766662	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385983|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009xkk.1||-0.3175760|-0.4766662	chr10	 24736418	 24736988	-	NA	NA	NA	NA	KIAA1217	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00chr10:24726418-24746989"	NA	inner
CUST_24526_PI429285431	0.87696564	A	0.8772809	A	0.999781502293958	0	lncRNA	26077-1_{1..589}	lnc-TBC1D30-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBC1D30-1:1	chr12	 65172851	 65173439	+	lnc-TBC1D30-1	lnc-TBC1D30-1:1	ENSG00000215159.3	RP11-629N8.3	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60"	NA	inter
LNCA_21_P0004950	0.8781992	A	0.8798052	A	0.998887424999028	0	lncRNA	TCONS_00011971	NA	NA	NA	NA	XLOC_005485	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005485), lincRNA [TCONS_00011971]"	chr6:140400660-140400719	hs|6q24.1	Agilent_HUMAN_G3V2	TCONS_00011971	TCONS_00011971	chr6	140400660	140400719	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5289_PI429285431	2.832459	A	2.9437811	A	0.925739316387675	0	lncRNA	5229-1_{1..189}	"transcript_id ""ENST00000558835.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558835.1"" | genecode_v17"	chr15	 89146614	 89146802	-	ENSG00000249487.2	ENST00000558835.1	RP11-97O12.2	RP11-97O12.2-003	NA	NA	NA	inter
CUST_45647_PI429285431	7.599658	P	7.124957	P	1.38963018774015	0	lncRNA	50024-1_{1..2053}	"gi|393185920|ref|NR_072987.1| Homo sapiens chromosome 10 open reading frame 57 (C10orf57), transcript variant 13, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393185920|ref|NR_072987.1| Homo sapiens chromosome 10 open reading frame 57 (C10orf57), transcript variant 13, non-coding RNA"	Chr10	 81839001	 81841053	+	80195	NR_072987.1	NA	NA	NA	NA	NA	inter
CUST_47256_PI429285431	1.809382	A	1.1294681	A	1.60204414237623	0	lncRNA	51328-1_{1..839}	"gi|154816196|ref|NR_003677.1| Homo sapiens malignant T cell amplified sequence 1 pseudogene (PSIMCT-1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|154816196|ref|NR_003677.1| Homo sapiens malignant T cell amplified sequence 1 pseudogene (PSIMCT-1), non-coding RNA"	Chr20	 30135185	 30136023	+	100101490	NR_003677.1	NA	NA	NA	NA	NA	inter
CUST_42994_PI429285431	10.26446	P	10.048508	P	1.16147008793646	0	lncRNA	46154-1_{1..135}	ENST00000384488 ncrna:snoRNA chromosome:GRCh37:7:6056508:6056642:1 gene:ENSG00000207217 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384488 ncrna:snoRNA chromosome:GRCh37:7:6056508:6056642:1 gene:ENSG00000207217 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	  6056508	  6056642	+	ENSG00000207217	ENST00000384488	NA	NA	PMS2	NA	chr7:6046508-6048737	inner
CUST_34134_PI429285431	2.3616266	A	0.9046895	A	2.74524916989829	0	lncRNA	35655-1_{1..3000}	n340975|CR749855|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3441|NULL|-1.0484900|-0.3729633	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340975|CR749855|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3441|NULL|-1.0484900|-0.3729633	chr11	 13293303	 13296302	-	NA	NA	NA	NA	ARNTL	NA	chr11:13299325-13308678	inter
CUST_9473_PI429285431	0.87991726	A	0.88791126	A	0.994474304566976	0	lncRNA	10979-1_{1..797}	lnc-API5-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-API5-4:1	chr11	 41883251	 41884047	+	lnc-API5-4	lnc-API5-4:1	XLOC_009113	linc-API5-2	NA	NA	NA	inter
CUST_51725_PI429285431	0.90537053	A	0.9117847	A	0.995563904815489	0	lncRNA	55281-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00011785 range=chr18:14224236-14256204 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011785 range=chr18:14224236-14256204 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr18	 14227236	 14230235	+	NA	NA	NA	NA	LOC100652806	NA	chr18:14234721-14249475	inter
CUST_12345_PI429285431	0.89420986	A	0.90711373	A	0.991095599982329	0	lncRNA	13957-1_{1..315}	lnc-RTKN2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RTKN2-3:1	chr10	 63580933	 63581247	-	lnc-RTKN2-3	lnc-RTKN2-3:1	XLOC_008833	linc-TMEM26-1	NA	NA	NA	inter
CUST_46529_PI429285431	9.122594	P	9.666566	P	0.685879955807335	0	lncRNA	50718-2_{3001..3296}	"gi|299890883|ref|NR_033936.1| Homo sapiens golgin A2 pseudogene (LOC727849), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|299890883|ref|NR_033936.1| Homo sapiens golgin A2 pseudogene (LOC727849), non-coding RNA"	Chr15	 82766613	 82766908	-	80154	NR_033936.2	NA	NA	NA	"hg19_refFlat_DNM1:range=chr9:130965750-1310154015'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310154015'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
CUST_26093_PI429285431	0.8752788	A	0.8763544	A	0.99925472874527	0	lncRNA	27606-1_{1..2608}	lnc-PRKRIR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRKRIR-1:1	chr11	 76153117	 76155724	-	lnc-PRKRIR-1	lnc-PRKRIR-1:1	ENSG00000255135.2	RP11-111M22.3	C11orf30	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.51;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80chr11:76156069-76165724"	NA	inter
CUST_42355_PI429285431	10.360449	P	10.143516	P	1.16226012990349	0	lncRNA	45024-1_{1..135}	ENST00000384401 ncrna:snoRNA chromosome:GRCh37:3:128433414:128433548:-1 gene:ENSG00000207130 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384401 ncrna:snoRNA chromosome:GRCh37:3:128433414:128433548:-1 gene:ENSG00000207130 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	128433414	128433548	-	ENSG00000207130	ENST00000384401	NA	NA	NA	NA	NA	inter
CUST_38830_PI429285431	4.830343	P	2.8786361	A	3.86831934529547	0	lncRNA	39823-2_{3001..3826}	n384625|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jka.1||-1.1494700|-0.4572311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384625|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jka.1||-1.1494700|-0.4572311	chr5	 36101657	 36102482	-	NA	NA	NA	NA	LMBRD2	NA	chr5:36103414-36112483	inter
CUST_25061_PI429285431	1.8293105	A	0.91074437	A	1.89023568653513	0	lncRNA	26598-1_{1..1076}	lnc-STYX-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STYX-4:1	chr14	 53623880	 53624955	+	lnc-STYX-4	lnc-STYX-4:1	ENSG00000258731.1	RP11-547D23.1	DDHD1	NA	chr14:53613880-53620046	inter
LNCA_21_P0004662	0.89921784	A	0.9248073	A	0.982419117236341	0	lncRNA	ENST00000435151	NA	NA	NA	NA	XLOC_005359	NA	ENST00000435151	NA	NA	"BROAD Institute lincRNA (XLOC_005359), lincRNA [TCONS_00011329]"	chr6:79980295-79980669	hs|6q14.1	Agilent_HUMAN_G3V2	ENST00000435151	ENST00000435151	chr6	 79980295	 79980669	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13964_PI429285431	0.9055423	A	0.91942245	A	0.990425146786746	0	lncRNA	15610-1_{1..1027}	lnc-VAX1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VAX1-1:4	chr10	118928371	118929397	-	lnc-VAX1-1	lnc-VAX1-1:4	XLOC_008959	linc-VAX1-2	NA	NA	NA	inter
CUST_80_PI429285431	1.7614598	A	2.2231998	A	0.726109986444498	0	lncRNA	74-1_{1..343}	"transcript_id ""ENST00000269201.6"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000269201.6"" | genecode_v17"	chr18	  1272319	  1272661	-	ENSG00000132204.9	ENST00000269201.6	LINC00470	LINC00470-201	NA	NA	NA	inter
CUST_4514_PI429285431	2.9848835	P	2.5025659	A	1.39698603607635	0	lncRNA	4463-1_{1..1986}	"transcript_id ""ENST00000502221.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502221.2"" | genecode_v17"	chr12	130336753	130338738	-	ENSG00000251536.2	ENST00000502221.2	RP11-572C21.1	RP11-572C21.1-001	TMEM132D	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr12:130326753-130349489"	NA	inner
CUST_43979_PI429285431	1.0504112	A	0.92110515	A	1.09376746218316	0	lncRNA	48679-2_{3001..4560}	"gi|310119042|ref|XR_109894.1| PREDICTED: Homo sapiens uncharacterized LOC100507460 (LOC100507460), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310119042|ref|XR_109894.1| PREDICTED: Homo sapiens uncharacterized LOC100507460 (LOC100507460), misc_RNA"	Chr2	132445470	132447029	+	100507460	XR_109894.1	NA	NA	NA	NA	NA	inter
CUST_19338_PI429285431	11.52614	P	11.61832	P	0.938104145234983	0	lncRNA	21004-1_{1..481}	lnc-USP31-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP31-1:1	chr16	 23224325	 23224805	-	lnc-USP31-1	lnc-USP31-1:1	ENSG00000260741.1	CTC-391G2.1	SCNN1G	NA	chr16:23214325-23228200	inner
CUST_10548_PI429285431	4.840083	P	5.192391	P	0.783329936512306	0	lncRNA	12078-1_{1..306}	lnc-KATNAL1-3:20	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KATNAL1-3:20	chr13	 30938206	 30938511	-	lnc-KATNAL1-3	lnc-KATNAL1-3:20	XLOC_010556	linc-KATNAL1-3	NA	NA	NA	inter
CUST_1685_PI429285431	6.9403853	P	6.8510656	P	1.06386839911067	0	lncRNA	1668-1_{1..492}	"transcript_id ""ENST00000509453.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509453.1"" | genecode_v17"	chr4	  8321903	  8322394	+	ENSG00000249145.1	ENST00000509453.1	RP11-774O3.2	RP11-774O3.2-001	NA	NA	NA	inter
CUST_20077_PI429285431	0.8878803	A	0.9006437	A	0.991192104075598	0	lncRNA	21725-1_{1..414}	lnc-C9orf93-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C9orf93-2:1	chr9	 16475991	 16476404	+	lnc-C9orf93-2	lnc-C9orf93-2:1	ENSG00000231756.1	RP11-183I6.2	BNC2	NA	chr9:16465991-16486235	inner
LNCA_21_P0012361	3.9957213	P	3.835969	P	1.11709532465394	0	lncRNA	TCONS_l2_00018428	NA	NA	NA	NA	XLOC_l2_009613	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009613), lincRNA [TCONS_l2_00018428]"	chr3:5884346-5884405	hs|3p26.1	Agilent_HUMAN_G3V2	TCONS_l2_00018428	TCONS_l2_00018428	chr3	  5884346	  5884405	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23190_PI429285431	2.1813505	A	1.5946914	A	1.50176502713638	0	lncRNA	24762-1_{1..889}	lnc-HHIPL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HHIPL1-2:1	chr14	 99979672	 99980560	+	lnc-HHIPL1-2	lnc-HHIPL1-2:1	ENSG00000258749.1	RP11-688G15.3	CCDC85C	NA	chr14:99977603-99989913	inner
CUST_39563_PI429285431	1.705939	A	1.6006968	A	1.07567495987803	0	lncRNA	40507-1_{1..2884}	n387522|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011gqa.1||-1.2618900|-0.2929588	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387522|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011gqa.1||-1.2618900|-0.2929588	chr6	  1003321	  1006204	-	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50"	NA	inter
CUST_35493_PI429285431	3.2734172	A	3.420632	P	0.902992055448583	0	lncRNA	36902-1_{1..975}	n342592|AF146695|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5092|NULL|-1.2502300|-0.3704978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342592|AF146695|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5092|NULL|-1.2502300|-0.3704978	chr10	 43246631	 43247605	-	NA	NA	NA	NA	LOC100505906	NA	chr10:43249164-43257593	inter
CUST_13084_PI429285431	0.90042186	A	0.92026067	A	0.986342900845493	0	lncRNA	14711-1_{1..419}	lnc-GPR26-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR26-4:3	chr10	125120835	125121253	+	lnc-GPR26-4	lnc-GPR26-4:3	XLOC_008652	linc-GPR26-3	NA	NA	NA	inter
LNCA_21_P0010004	0.89462507	A	0.9115508	A	0.988336529796288	0	lncRNA	TCONS_00028318	NA	NA	NA	NA	XLOC_013655	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013655), lincRNA [TCONS_00028318]"	chr20:12631960-12631901	hs|20p12.1	Agilent_HUMAN_G3V2	TCONS_00028318	TCONS_00028318	chr20	 12631901	 12631960	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29603_PI429285431	5.934231	P	3.3926852	P	5.8221249426864	0	lncRNA	31364-1_{1..234}	n333122|AF339835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077987|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077987|-1.1310600|-0.2967772	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333122|AF339835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077987|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077987|-1.1310600|-0.2967772	chr13	 96444952	 96445185	+	NA	NA	NA	NA	UGGT2	NA	chr13:96453834-96455186	inner
CUST_43560_PI429285431	7.783934	P	7.7017674	P	1.05860663393294	0	lncRNA	48334-2_{3001..5569}	"gi|387942382|ref|NR_049741.1| Homo sapiens suppressor of IKBKE 1 (SIKE1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387942382|ref|NR_049741.1| Homo sapiens suppressor of IKBKE 1 (SIKE1), transcript variant 3, non-coding RNA"	Chr1	115315100	115317668	-	80143	NR_049741.1	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70"	NA	inter
CUST_5679_PI429285431	0.8842978	A	0.89392215	A	0.993351111262104	0	lncRNA	5604-1_{1..960}	"transcript_id ""ENST00000593604.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593604.1"" | genecode_v17"	chr16	 86523874	 86524833	-	ENSG00000268388.1	ENST00000593604.1	FENDRR	FENDRR-007	FOXF1	NA	chr16:86544133-86548070	inter
CUST_4465_PI429285431	0.8753002	A	0.8849425	A	0.993338752072519	0	lncRNA	4415-1_{1..1282}	"transcript_id ""ENST00000543970.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000543970.1"" | genecode_v17"	chr12	124997768	124999049	+	ENSG00000214650.2	ENST00000543970.1	RP11-83B20.1	RP11-83B20.1-001	NCOR2	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00chr12:124987768-125009359"	NA	inner
CUST_14823_PI429285431	1.1328186	A	0.8866988	A	1.18601298069213	0	lncRNA	16485-1_{1..365}	lnc-AKT3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AKT3-1:1	chr1	244142606	244142970	-	lnc-AKT3-1	lnc-AKT3-1:1	XLOC_001285	linc-AKT3-3	NA	NA	NA	inter
LNCA_21_P0001881	0.88268876	A	0.8937045	A	0.99239354747757	0	lncRNA	ENST00000444852	NA	NA	NA	NA	XLOC_001540	NA	ENST00000444852	NA	NA	"BROAD Institute lincRNA (XLOC_001540), lincRNA [TCONS_00002939]"	chr2:75709630-75709689	hs|2p12	Agilent_HUMAN_G3V2	ENST00000444852	ENST00000444852	chr2	 75709630	 75709689	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50631_PI429285431	1.4938997	A	1.4358349	A	1.04106835719504	0	lncRNA	54315-1_{1..1149}	hg19_lincRNAsTranscripts_TCONS_l2_00003435 range=chr10:27220140-27233361 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003435 range=chr10:27220140-27233361 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 27220140	 27221288	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44352_PI429285431	10.199101	P	10.578035	P	0.769005595078403	0	lncRNA	48974-1_{1..3000}	"gi|372461122|ref|NR_045511.2| Homo sapiens G protein-coupled receptor 78 (GPR78), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372461122|ref|NR_045511.2| Homo sapiens G protein-coupled receptor 78 (GPR78), transcript variant 2, non-coding RNA"	Chr4	  8581964	  8584963	+	27201	NR_045511.2	NA	NA	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40"	NA	inter
CUST_46474_PI429285431	7.1562943	P	7.118271	P	1.02670612722816	0	lncRNA	50672-2_{3001..4329}	"gi|225579026|ref|NR_027390.1| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide M (POLR2M), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225579026|ref|NR_027390.1| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide M (POLR2M), transcript variant 3, non-coding RNA"	Chr15	 58001901	 58003229	+	81488	NR_027390.1	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00"	NA	inter
CUST_29571_PI429285431	2.5188003	A	3.5528867	P	0.488325018837488	0	lncRNA	31331-1_{1..403}	n333068|AF262301|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075454|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075454|1.4234700|-0.1258703	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333068|AF262301|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000075454|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000075454|1.4234700|-0.1258703	chr3	 46283951	 46284353	+	NA	NA	NA	NA	CCR3	NA	chr3:46283872-46308197	inner
CUST_15830_PI429285431	0.88855314	A	0.9264043	A	0.974104759824942	0	lncRNA	17520-1_{1..811}	lnc-ZMYM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZMYM2-1:1	chr13	 20531456	 20532266	+	lnc-ZMYM2-1	lnc-ZMYM2-1:1	XLOC_010292	linc-ZMYM2	ZMYM2	NA	chr13:20532810-20542202	inter
CUST_32113_PI429285431	4.941304	P	3.959454	P	1.97499636774074	0	lncRNA	33815-1_{1..1253}	n338678|BC013927|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1094|NULL|-0.9721370|-0.1710619	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338678|BC013927|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1094|NULL|-0.9721370|-0.1710619	chr2	 12000103	 12001355	+	NA	NA	NA	NA	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	inter
CUST_4694_PI429285431	0.8856817	A	0.882543	A	1.00217794934925	0	lncRNA	4641-1_{1..684}	"transcript_id ""ENST00000440735.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440735.1"" | genecode_v17"	chr13	111635654	111636337	+	ENSG00000225760.1	ENST00000440735.1	RP11-365P13.3	RP11-365P13.3-001	NA	NA	NA	inter
LNCA_21_P0004220	3.747736	P	3.363041	P	1.30558374459497	0	lncRNA	TCONS_00009860	NA	NA	NA	NA	XLOC_004273	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004273), lincRNA [TCONS_00009860]"	chr5:6775806-6775865	hs|5p15.31	Agilent_HUMAN_G3V2	TCONS_00009860	TCONS_00009860	chr5	  6775806	  6775865	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010736	4.5642343	P	5.2234473	P	0.63322363060176	0	lncRNA	ENST00000457321	NA	NA	NA	NA	XLOC_l2_000552	NA	ENST00000457321	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000552), lincRNA [TCONS_l2_00002268]"	chr1:192499587-192506895	hs|1q31.2	Agilent_HUMAN_G3V2	ENST00000457321	ENST00000457321	chr1	192499587	192506895	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31732_PI429285431	0.90388197	A	0.91093653	A	0.995122087471719	0	lncRNA	33473-1_{1..2122}	n338267|BC031615|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|660|NULL|-0.7578580|-0.4639855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338267|BC031615|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|660|NULL|-0.7578580|-0.4639855	chr14	 37869004	 37871125	+	NA	NA	NA	NA	MIPOL1	NA	chr14:37859004-37881105	inner
CUST_51530_PI429285431	4.060054	P	4.7705264	P	0.611119999280941	0	lncRNA	55098-6_{15001..18000}	hg19_lincRNAsTranscripts_TCONS_l2_00011139 range=chr17:20432533-20460098 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011139 range=chr17:20432533-20460098 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 20447533	 20450532	-	NA	NA	NA	NA	CDRT15L2	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70chr17:20422533-20470098"	NA	inter
CUST_20627_PI429285431	4.2325525	P	4.6685953	P	0.739159286895326	0	lncRNA	22266-1_{1..699}	lnc-SEPHS2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEPHS2-2:1	chr16	 30500380	 30501078	-	lnc-SEPHS2-2	lnc-SEPHS2-2:1	ENSG00000261346.1	RP11-297C4.2	ITGAL	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ITGAL:range=chr16:30484159-305329865'pad=0,hg19_refFlat_ITGAL:range=chr16:30484159-305329865'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.00chr16:30490380-30510674"	NA	inner
CUST_24185_PI429285431	9.282878	P	9.277784	P	1.00353713267921	0	lncRNA	25736-1_{1..428}	lnc-PLCD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLCD3-1:1	chr17	 43236697	 43237124	-	lnc-PLCD3-1	lnc-PLCD3-1:1	ENSG00000224505.1	AC002117.1	HEXIM2	NA	chr17:43238264-43246822	inter
LNCA_21_P0010759	2.3406703	A	1.077481	A	2.40025768852407	0	lncRNA	ENST00000458145	XR_110514	XR_110514	NA	Hs.98895	XLOC_l2_000920	NA	ENST00000458145	THC2667582	NA	"PREDICTED: Homo sapiens hypothetical LOC100507652 (LOC100507652), miscRNA [XR_110514]"	chr1:56381657-56381598	hs|1p32.2	Agilent_HUMAN_G3V2	ENST00000458145	ENST00000458145	chr1	 56381598	 56381657	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44578_PI429285431	1.7920367	A	1.3521258	A	1.35652054694681	0	lncRNA	49159-1_{1..2734}	"gi|341915282|ref|XR_108596.2| PREDICTED: Homo sapiens uncharacterized LOC100505994 (LOC100505994), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|341915282|ref|XR_108596.2| PREDICTED: Homo sapiens uncharacterized LOC100505994 (LOC100505994), misc_RNA"	NA	NA	NA	NA	NA	XR_108596.2	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	Unknown
CUST_42506_PI429285431	1.6717421	A	0.8758169	A	1.73619043589266	0	lncRNA	45284-1_{1..124}	ENST00000363666 ncrna:snoRNA chromosome:GRCh37:1:110815106:110815229:1 gene:ENSG00000200536 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363666 ncrna:snoRNA chromosome:GRCh37:1:110815106:110815229:1 gene:ENSG00000200536 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	110815106	110815229	+	ENSG00000200536	ENST00000363666	NA	NA	NA	NA	NA	inter
LNCA_19_P00318314	7.4631886	P	7.7991385	P	0.792262323082478	0	lncRNA	XR_132650	XR_132650	XR_132650	NA	NA	LOC100506694	uncharacterized LOC100506694	NA	THC2497772	NA	"PREDICTED: Homo sapiens hypothetical LOC100506694, transcript variant 3 (LOC100506694), miscRNA [XR_132650]"	chr19:28296728-28296787	hs|19q11	Agilent_HUMAN_G3V2	XR_132650	XR_132650	chr19	 28296728	 28296787	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001485	0.8776804	A	0.8788382	A	0.999197796132055	0	lncRNA	TCONS_00001441	NA	NA	NA	NA	XLOC_000757	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000757), lincRNA [TCONS_00001441]"	chr1:28572810-28572751	hs|1p35.3	Agilent_HUMAN_G3V2	TCONS_00001441	TCONS_00001441	chr1	 28572751	 28572810	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1803_PI429285431	3.4898071	P	3.5261087	P	0.97515158166897	0	lncRNA	1790-1_{1..469}	"transcript_id ""ENST00000505930.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505930.1"" | genecode_v17"	chr4	 76194278	 76194746	-	ENSG00000251185.1	ENST00000505930.1	RP11-542G1.1	RP11-542G1.1-001	NA	NA	NA	inter
LNCA_19_P00807207	0.8780496	A	2.4047399	A	0.347072677044536	0	lncRNA	TCONS_00014970	NA	NA	NA	NA	XLOC_007052	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007052), lincRNA [TCONS_00014970]"	chr8:37183752-37183693	hs|8p11.23	Agilent_HUMAN_G3V2	TCONS_00014970	TCONS_00014970	chr8	 37183693	 37183752	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3350_PI429285431	2.869867	A	3.4498167	P	0.66898710142457	0	lncRNA	3325-1_{1..1809}	"transcript_id ""ENST00000529743.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000529743.1"" | genecode_v17"	chr8	144840323	144842131	-	ENSG00000254973.1	ENST00000529743.1	RP11-429J17.7	RP11-429J17.7-001	NA	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60"	NA	inter
CUST_17488_PI429285431	5.9509134	P	6.5251603	P	0.671636760426543	0	lncRNA	19215-1_{1..227}	lnc-C11orf44-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C11orf44-1:1	chr11	130605835	130606061	+	lnc-C11orf44-1	lnc-C11orf44-1:1	XLOC_009333	linc-NTM-8	NA	NA	NA	inter
LNCA_21_P0006411	0.8782717	A	0.880417	A	0.998514096403095	0	lncRNA	ENST00000453953	NA	NA	NA	NA	XLOC_007917	NA	ENST00000453953	THC2542919	NA	"BROAD Institute lincRNA (XLOC_007917), lincRNA [TCONS_00016961]"	chrY:1837381-1837440	hs|Yp11.32	Agilent_HUMAN_G3V2	ENST00000453953	ENST00000453953	chrY	  1837381	  1837440	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27373_PI429285431	0.8845288	A	0.8942758	A	0.993266665601974	0	lncRNA	28936-1_{1..3000}	n324535|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040220|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040220|-1.0494200|-0.3199008	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324535|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040220|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040220|-1.0494200|-0.3199008	chr6	 34355459	 34358458	+	NA	NA	NA	NA	NUDT3	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_NUDT3:range=chr6:34256530-343601395'pad=0,hg19_refFlat_NUDT3:range=chr6:34256530-343601395'pad=0 3'pad=0 strand=- repeatMasking=none,-94.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90chr6:34345459-34360457"	NA	inner
CUST_5080_PI429285431	4.031279	P	4.2483416	P	0.860315299848743	0	lncRNA	5020-1_{1..241}	"transcript_id ""ENST00000414005.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414005.1"" | genecode_v17"	chr14	106355942	106356182	+	ENSG00000244620.1	ENST00000414005.1	AL122127.25	AL122127.25-001	NA	NA	NA	inter
LNCA_21_P0007664	0.87727624	A	0.8806107	A	0.997691397383789	0	lncRNA	TCONS_00020643	NA	NA	NA	NA	XLOC_009944	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009944), lincRNA [TCONS_00020643]"	chr12:127636993-127637052	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020643	TCONS_00020643	chr12	127636993	127637052	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42049_PI429285431	1.6432662	A	1.4677588	A	1.12936153466982	0	lncRNA	43951-1_{1..81}	ENST00000583628 ncrna:miRNA chromosome:GRCh37:11:105804680:105804760:1 gene:ENSG00000263371 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583628 ncrna:miRNA chromosome:GRCh37:11:105804680:105804760:1 gene:ENSG00000263371 gene_biotype:miRNA transcript_biotype:miRNA	chr11	105804680	105804760	+	ENSG00000263371	ENST00000583628	NA	NA	GRIA4	NA	chr11:105794680-105814760	inter
CUST_8109_PI429285431	2.7941895	A	2.1773345	A	1.53352852258644	0	lncRNA	9712-2_{3001..3305}	lnc-RPGRIP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPGRIP1-2:1	chr14	 21672731	 21673035	+	lnc-RPGRIP1-2	lnc-RPGRIP1-2:1	ENSG00000247386	XLOC_010754	HNRNPC	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40chr14:21677295-21682514"	NA	inter
CUST_36469_PI429285431	6.717346	P	6.888447	P	0.888164615157176	0	lncRNA	37677-1_{1..645}	n344977|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_526|NULL|-1.2985500|-0.2590912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344977|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_526|NULL|-1.2985500|-0.2590912	chr8	103698637	103699281	+	NA	NA	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40"	NA	inter
CUST_10808_PI429285431	4.009886	P	4.4961143	P	0.713889011179123	0	lncRNA	12344-2_{3001..6000}	lnc-ARFGEF2-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ARFGEF2-2:7	chr20	 47135105	 47138104	+	lnc-ARFGEF2-2	lnc-ARFGEF2-2:7	XLOC_013553	linc-ARFGEF2-2	NA	NA	NA	inter
LNCA_21_P0012842	0.90045613	A	0.9260919	A	0.982387582436652	0	lncRNA	TCONS_l2_00022460	NA	NA	NA	NA	XLOC_l2_011704	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011704), lincRNA [TCONS_l2_00022460]"	chr5:107117732-107117791	hs|5q21.3	Agilent_HUMAN_G3V2	TCONS_l2_00022460	TCONS_l2_00022460	chr5	107117732	107117791	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2527_PI429285431	3.0017898	P	2.4484346	A	1.46749460549176	0	lncRNA	2515-1_{1..816}	"transcript_id ""ENST00000416951.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416951.1"" | genecode_v17"	chr6	 41470182	 41470997	+	ENSG00000226917.1	ENST00000416951.1	RP11-328M4.3	RP11-328M4.3-002	NA	NA	NA	inter
CUST_17223_PI429285431	1.0916348	A	2.4377759	A	0.393342750668006	0	lncRNA	18937-1_{1..702}	lnc-FOXP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXP1-1:1	chr3	 70666522	 70667223	-	lnc-FOXP1-1	lnc-FOXP1-1:1	XLOC_003156	linc-FRMD4B-2	NA	NA	NA	inter
CUST_31669_PI429285431	1.2387581	A	0.92922866	A	1.23930341371555	0	lncRNA	33417-3_{6001..6075}	n338192|AB007959|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|583|NULL|-1.1488300|-0.2795876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338192|AB007959|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|583|NULL|-1.1488300|-0.2795876	chr1	116386466	116386540	+	NA	NA	NA	NA	NHLH2	"hg19_refFlat_NHLH2:range=chr1:116380586-1163809935'pad=0,hg19_refFlat_NHLH2:range=chr1:116380586-1163809935'pad=0 3'pad=0 strand=- repeatMasking=none,-103.90;hg19_refFlat_NHLH1:range=chr1:160340522-1603409235'pad=0,hg19_refFlat_NHLH1:range=chr1:160340522-1603409235'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10chr1:116378998-116383747"	NA	inner
LNCA_21_P0008623	2.9670658	A	4.4764	P	0.351273293242185	0	lncRNA	THC2626981	NA	NA	NA	NA	XLOC_011223	NA	NA	THC2626981	NA	"BROAD Institute lincRNA (XLOC_011223), lincRNA [TCONS_00023377]"	chr15:041202458-041202517	hs|15q15.1	Agilent_HUMAN_G3V2	THC2626981	THC2626981	chr15	 41202458	 41202517	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37516_PI429285431	11.467484	P	11.306505	P	1.1180455764745	0	lncRNA	38619-1_{1..226}	n345989|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1538|NULL|-1.3145700|-0.3599663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345989|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1538|NULL|-1.3145700|-0.3599663	chrX	 30648273	 30648498	-	NA	NA	NA	NA	NA	"hg19_refFlat_FTL:range=chr19:49468765-494699925'pad=0,hg19_refFlat_FTL:range=chr19:49468765-494699925'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90"	NA	inter
CUST_37633_PI429285431	5.2055883	P	5.034456	P	1.12594183406545	0	lncRNA	38728-1_{1..539}	n346110|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1660|NULL|-1.6070800|-0.2763477	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346110|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1660|NULL|-1.6070800|-0.2763477	chr7	128281385	128281923	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011836	0.90509033	A	0.92798233	A	0.984257700704597	0	lncRNA	TCONS_l2_00013870	NA	NA	NA	NA	XLOC_l2_007470	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007470), lincRNA [TCONS_l2_00013870]"	chr2:105469981-105470243	hs|2q12.1	Agilent_HUMAN_G3V2	TCONS_l2_00013870	TCONS_l2_00013870	chr2	105469981	105470243	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26082_PI429285431	4.4791393	P	4.791703	P	0.805209612386912	0	lncRNA	27595-1_{1..1997}	lnc-MPPED1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MPPED1-2:1	chr22	 43930733	 43932729	+	lnc-MPPED1-2	lnc-MPPED1-2:1	ENSG00000223843.1	EFCAB6-AS1	EFCAB6	NA	chr22:43924624-43942485	inner
CUST_48638_PI429285431	0.90550464	A	0.9070131	A	0.998954961637331	0	lncRNA	52485-1_{1..2126}	hg19_lincRNAsTranscripts_TCONS_l2_00013782 range=chr2:91750965-91769187 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013782 range=chr2:91750965-91769187 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 91750965	 91753090	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22423_PI429285431	2.6788423	A	1.9713796	A	1.63292972024281	0	lncRNA	24012-1_{1..571}	lnc-ELL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ELL2-1:1	chr5	 95321964	 95322534	-	lnc-ELL2-1	lnc-ELL2-1:1	ENSG00000250955.1	AC008592.7	NA	NA	NA	inter
CUST_14191_PI429285431	1.0832751	A	1.9183722	A	0.560545310471628	0	lncRNA	15843-1_{1..257}	lnc-C6orf118-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C6orf118-1:1	chr6	165241067	165241323	-	lnc-C6orf118-1	lnc-C6orf118-1:1	XLOC_005915	linc-PARK2-4	NA	NA	NA	inter
LNCA_32_P19840	9.920155	P	11.115416	P	0.436707435451723	0	lncRNA	XR_108783	XR_108783	XR_108783	100507507	Hs.626125	LOC100507507	uncharacterized LOC100507507	ENST00000429630	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507507 (LOC100507507), miscRNA [XR_108783]"	chr7:143076846-143076787	hs|7q34	Agilent_HUMAN_G3V2	XR_108783	XR_108783	chr7	143076787	143076846	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15848_PI429285431	1.1547997	A	0.893745	A	1.19835445626797	0	lncRNA	17542-1_{1..641}	lnc-FOXP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXP1-1:2	chr3	 70666522	 70667162	-	lnc-FOXP1-1	lnc-FOXP1-1:2	XLOC_003156	linc-FRMD4B-2	NA	NA	NA	inter
CUST_41691_PI429285431	0.90261644	A	0.9064196	A	0.997367321960006	0	lncRNA	43165-1_{1..75}	ENST00000581678 ncrna:miRNA chromosome:GRCh37:13:66792382:66792456:1 gene:ENSG00000263561 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581678 ncrna:miRNA chromosome:GRCh37:13:66792382:66792456:1 gene:ENSG00000263561 gene_biotype:miRNA transcript_biotype:miRNA	chr13	 66792382	 66792456	+	ENSG00000263561	ENST00000581678	NA	NA	NA	NA	NA	inter
CUST_30095_PI429285431	5.9183073	P	5.9289837	P	0.992626998362833	0	lncRNA	31867-1_{1..286}	n334632|U88316|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000222072|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000222072|-1.4953700|-0.0359126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334632|U88316|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000222072|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000222072|-1.4953700|-0.0359126	chr11	 65429642	 65429927	-	NA	NA	NA	NA	RELA	NA	chr11:65421067-65430443	inner
CUST_10767_PI429285431	4.366473	P	4.1388965	P	1.17086642546735	0	lncRNA	12303-1_{1..489}	lnc-SERPINI1-9:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERPINI1-9:3	chr3	164405416	164405904	+	lnc-SERPINI1-9	lnc-SERPINI1-9:3	XLOC_002900	linc-SERPINI1-4	NA	NA	NA	inter
CUST_21466_PI429285431	2.9814415	A	3.1041653	A	0.918451980577529	0	lncRNA	23085-1_{1..561}	lnc-BAZ1A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BAZ1A-1:2	chr14	 35451630	 35452190	-	lnc-BAZ1A-1	lnc-BAZ1A-1:2	ENSG00000258704.1	RP11-85K15.2	SRP54	NA	chr14:35452104-35461721	inter
CUST_8139_PI429285431	1.7366796	A	1.3626623	A	1.2959565057329	0	lncRNA	9742-1_{1..595}	lnc-PCM1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PCM1-3:4	chr8	 17953335	 17953929	+	lnc-PCM1-3	lnc-PCM1-3:4	ENSG00000245281	CTD-2547L16.1	NA	NA	NA	inter
CUST_3023_PI429285431	1.5375917	A	2.073036	A	0.689946164504565	0	lncRNA	3002-1_{1..519}	"transcript_id ""ENST00000518324.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518324.1"" | genecode_v17"	chr8	 18949243	 18949761	+	ENSG00000254242.1	ENST00000518324.1	RP11-1080G15.2	RP11-1080G15.2-001	NA	NA	NA	inter
CUST_30655_PI429285431	0.90832895	A	0.91927683	A	0.992440227758622	0	lncRNA	32437-1_{1..265}	n336065|X85164|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324129|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324129|1.8471800|-0.4254516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336065|X85164|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324129|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324129|1.8471800|-0.4254516	chr2	 89246830	 89247094	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_263_PI429285431	6.8761926	P	7.143638	P	0.830789334271733	0	lncRNA	255-1_{1..157}	"transcript_id ""ENST00000427547.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427547.1"" | genecode_v17"	chr1	 63543752	 63543908	-	ENSG00000229225.1	ENST00000427547.1	RP11-5P4.3	RP11-5P4.3-001	NA	NA	NA	inter
CUST_33931_PI429285431	9.694955	P	9.744633	P	0.966151943591679	0	lncRNA	35472-1_{1..1450}	n340729|BC038560|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3192|NULL|-0.8002980|-0.2007195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n340729|BC038560|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3192|NULL|-0.8002980|-0.2007195	chr17	 46782564	 46784013	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3473_PI429285431	1.0735221	A	1.3414965	A	0.830484760553307	0	lncRNA	3444-1_{1..409}	"transcript_id ""ENST00000427523.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427523.1"" | genecode_v17"	chr9	 93225806	 93226214	-	ENSG00000229613.1	ENST00000427523.1	RP11-555F9.2	RP11-555F9.2-001	NA	NA	NA	inter
CUST_13029_PI429285431	0.8791147	A	0.88749516	A	0.994207946772545	0	lncRNA	14654-3_{6001..8403}	lnc-ARRDC3-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARRDC3-1:10	chr5	 90615455	 90617857	-	lnc-ARRDC3-1	lnc-ARRDC3-1:10	XLOC_004924	linc-LYSMD3-2	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20"	NA	inter
CUST_6184_PI429285431	1.8364335	A	2.0050259	A	0.889710325035156	0	lncRNA	6108-1_{1..714}	"transcript_id ""ENST00000582700.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582700.1"" | genecode_v17"	chr18	 49862731	 49863444	-	ENSG00000266335.1	ENST00000582700.1	RP11-25O3.1	RP11-25O3.1-001	DCC	NA	chr18:49866542-49875395	inter
CUST_33227_PI429285431	5.0829225	P	5.470697	P	0.764307715926612	0	lncRNA	34816-1_{1..1917}	n339926|BC037384|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2375|NULL|-0.9940810|-0.2739856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n339926|BC037384|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2375|NULL|-0.9940810|-0.2739856	chr18	 73408032	 73409948	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012684	1.9167349	A	2.808103	A	0.539102647617407	0	lncRNA	ENST00000515354	NA	NA	NA	NA	LOC152586	glycosyltransferase 54 domain-containing protein	ENST00000515354	NA	GO:0016758|GO:0016020|GO:0005975|GO:0005576	"BROAD Institute lincRNA (XLOC_l2_011289), lincRNA [TCONS_l2_00021317]"	chr4:141363492-141363433	hs|4q31.1	Agilent_HUMAN_G3V2	ENST00000515354	ENST00000515354	chr4	141363433	141363492	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007581	0.8749292	A	0.8779919	A	0.997879349892568	0	lncRNA	TCONS_00020471	NA	NA	NA	NA	XLOC_009804	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009804), lincRNA [TCONS_00020471]"	chr12:74310051-74313023	hs|12q21.1	Agilent_HUMAN_G3V2	TCONS_00020471	TCONS_00020471	chr12	 74310051	 74313023	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21024_PI429285431	2.0521903	A	1.5419939	A	1.42424407059392	0	lncRNA	22652-1_{1..889}	lnc-TTC30B-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TTC30B-1:4	chr2	178187813	178188701	-	lnc-TTC30B-1	lnc-TTC30B-1:4	ENSG00000213963.2	AC074286.1	NA	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40"	NA	inter
CUST_42866_PI429285431	3.6249197	P	4.0438557	P	0.747976059725025	0	lncRNA	45922-1_{1..128}	ENST00000365087 ncrna:snoRNA chromosome:GRCh37:3:178886871:178886998:-1 gene:ENSG00000201957 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365087 ncrna:snoRNA chromosome:GRCh37:3:178886871:178886998:-1 gene:ENSG00000201957 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	178886871	178886998	-	ENSG00000201957	ENST00000365087	NA	NA	PIK3CA	NA	chr3:178876871-178896998	inner
CUST_3984_PI429285431	2.1634235	A	3.1677413	P	0.498505801638612	0	lncRNA	3945-1_{1..396}	"transcript_id ""ENST00000602344.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602344.1"" | genecode_v17"	chr11	 65265481	 65265876	-	ENSG00000270117.1	ENST00000602344.1	AP000769.7	AP000769.7-001	NA	NA	NA	inter
CUST_20112_PI429285431	1.39497	A	1.460836	A	0.9553716688275	0	lncRNA	21760-1_{1..1231}	lnc-PLD6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLD6-1:1	chr17	 17088802	 17090032	-	lnc-PLD6-1	lnc-PLD6-1:1	ENSG00000263624.1	RP11-45M22.3	MPRIP	NA	chr17:17078802-17095962	inner
LNCA_21_P0012503	0.87506163	A	0.8767415	A	0.998836280493117	0	lncRNA	ENST00000469812	NA	NA	NA	NA	XLOC_l2_009929	NA	ENST00000469812	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009929), lincRNA [TCONS_l2_00019924]"	chr3:148006821-148029947	hs|3q24	Agilent_HUMAN_G3V2	ENST00000469812	ENST00000469812	chr3	148006821	148029947	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004633	0.87542516	A	0.8767118	A	0.999108566674576	0	lncRNA	ENST00000412132	NA	NA	NA	NA	XLOC_005171	NA	ENST00000412132	NA	NA	"BROAD Institute lincRNA (XLOC_005171), lincRNA [TCONS_00011268]"	chr6:11811378-11811437	hs|6p24.1	Agilent_HUMAN_G3V2	ENST00000412132	ENST00000412132	chr6	 11811378	 11811437	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7286_PI429285431	0.8916613	A	1.094787	A	0.868666496157138	0	lncRNA	8214-1_{1..309}	"transcript_id ""ENST00000363105.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000363105.1"" | genecode_v17"	chr11	 73543427	 73543735	-	ENSG00000199975.1	ENST00000363105.1	RN7SKP243	RN7SKP243-201	MRPL48	NA	chr11:73533427-73553735	inner
LNCA_21_P0014320	0.87564236	A	0.87678194	A	0.999210415222223	0	lncRNA	XR_109264	XR_109264	XR_109264	NA	Hs.729972	LOC100506372	uncharacterized LOC100506372	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506372 (LOC100506372), miscRNA [XR_109264]"	chr16:20899036-20899095	hs|16p12.3	Agilent_HUMAN_G3V2	XR_109264	XR_109264	chr16	 20899036	 20899095	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13105_PI429285431	4.7654414	P	4.6357408	P	1.09406662794946	0	lncRNA	14729-1_{1..1419}	lnc-CXCR5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CXCR5-1:2	chr11	118663963	118665381	+	lnc-CXCR5-1	lnc-CXCR5-1:2	XLOC_009294	linc-CXCR5-1	DDX6	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-15.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr11:118653963-118661972"	NA	inter
CUST_19243_PI429285431	2.7488623	A	2.4022691	A	1.27155441310105	0	lncRNA	20912-1_{1..430}	lnc-ARHGAP15-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-ARHGAP15-3:2	chr2	145278321	145278750	+	lnc-ARHGAP15-3	lnc-ARHGAP15-3:2	ENSG00000238057.2	ZEB2-AS1	ZEB2	NA	chr2:145268321-145277958	inter
LNCA_21_P0010326	3.0317256	P	3.5566363	P	0.695002127861543	0	lncRNA	TCONS_00029312	NA	NA	NA	NA	XLOC_014110	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014110), lincRNA [TCONS_00029312]"	chr21:45578954-45578640	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029312	TCONS_00029312	chr21	 45578640	 45578954	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31052_PI429285431	2.2655196	A	2.0565841	A	1.15583503033502	0	lncRNA	32842-1_{1..250}	n337275|BC127922|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389540|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389540|-1.1672200|-0.2106237	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337275|BC127922|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389540|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389540|-1.1672200|-0.2106237	chr16	   332328	   332577	-	NA	NA	NA	NA	AXIN1	"hg19_refFlat_ARHGDIG:range=chr16:330681-3328145'pad=0,hg19_refFlat_ARHGDIG:range=chr16:330681-3328145'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.80chr16:337440-342757"	NA	inner
CUST_43734_PI429285431	6.6220813	P	5.532383	P	2.12829524393447	0	lncRNA	48478-2_{3001..5320}	"gi|388453756|ref|NR_049764.1| Homo sapiens F-box protein 28 (FBXO28), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388453756|ref|NR_049764.1| Homo sapiens F-box protein 28 (FBXO28), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_049764.1	NA	NA	NA	NA	NA	Unknown
CUST_44760_PI429285431	7.0913024	P	7.0611687	P	1.02110675114289	0	lncRNA	49305-1_{1..3000}	"gi|393715083|ref|NR_072997.1| Homo sapiens PTK7 protein tyrosine kinase 7 (PTK7), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393715083|ref|NR_072997.1| Homo sapiens PTK7 protein tyrosine kinase 7 (PTK7), transcript variant 7, non-coding RNA"	Chr6	 43044006	 43047005	+	5754	NR_072997.1	NA	NA	NA	NA	NA	inter
CUST_9867_PI429285431	0.90166235	A	0.8887528	A	1.00898837317163	0	lncRNA	11390-1_{1..387}	lnc-TTPA-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTPA-1:2	chr8	 64382541	 64382927	-	lnc-TTPA-1	lnc-TTPA-1:2	XLOC_007101	linc-TTPA-3	NA	NA	NA	inter
CUST_25139_PI429285431	4.4068003	P	3.772882	P	1.55177382891605	0	lncRNA	26677-1_{1..974}	lnc-PCDH19-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PCDH19-1:3	chrX	 96819379	 96820352	-	lnc-PCDH19-1	lnc-PCDH19-1:3	ENSG00000236256.4	DIAPH2-AS1	DIAPH2	NA	chrX:96809379-96829532	inner
CUST_45608_PI429285431	5.8386855	P	6.4470854	P	0.655923786870771	0	lncRNA	49995-1_{1..3000}	"gi|372220201|ref|NR_045662.3| Homo sapiens myopalladin (MYPN), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372220201|ref|NR_045662.3| Homo sapiens myopalladin (MYPN), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_045662.3	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002989	0.87751293	A	0.88062835	A	0.997842885333792	0	lncRNA	TCONS_00006113	NA	NA	NA	NA	XLOC_002721	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002721), lincRNA [TCONS_00006113]"	chr3:83486635-83486694	hs|3p12.2	Agilent_HUMAN_G3V2	TCONS_00006113	TCONS_00006113	chr3	 83486635	 83486694	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1893_PI429285431	0.8857455	A	0.88463944	A	1.00076695633124	0	lncRNA	1884-1_{1..646}	"transcript_id ""ENST00000514293.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514293.1"" | genecode_v17"	chr4	135854044	135854689	-	ENSG00000249847.1	ENST00000514293.1	RP11-192C21.2	RP11-192C21.2-001	NA	NA	NA	inter
CUST_2818_PI429285431	7.2008677	P	7.2673244	P	0.954980579572535	0	lncRNA	2801-1_{1..1073}	"transcript_id ""ENST00000580528.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580528.1"" | genecode_v17"	chr7	 45025061	 45026133	-	ENSG00000232956.3	ENST00000580528.1	SNHG15	SNHG15-003	MYO1G	NA	chr7:45015061-45018704	inter
LNCA_19_P00804289	0.8758024	A	0.879906	A	0.997159642699278	0	lncRNA	XR_108925	XR_108925	XR_108925	NA	NA	LOC100506189	NA	ENST00000437881	THC2652445	NA	"PREDICTED: Homo sapiens hypothetical LOC100506189 (LOC100506189), miscRNA [XR_108925]"	chr9:6066625-6066684	hs|9p24.1	Agilent_HUMAN_G3V2	XR_108925	XR_108925	chr9	  6066625	  6066684	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26860_PI429285431	4.5030985	P	4.9477477	P	0.734762956963836	0	lncRNA	28374-1_{1..202}	n323932|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331581|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331581|-1.2135400|-0.2191581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323932|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331581|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331581|-1.2135400|-0.2191581	chr9	137645962	137646163	+	NA	NA	NA	NA	COL5A1	NA	chr9:137635962-137657175	inner
CUST_13186_PI429285431	2.4156823	A	2.2968857	A	1.08582875872861	0	lncRNA	14813-1_{1..638}	lnc-C1orf204-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf204-1:4	chr1	159748205	159748842	-	lnc-C1orf204-1	lnc-C1orf204-1:4	XLOC_001061	linc-CRP	DUSP23	NA	chr1:159750759-159752333	inter
LNCA_21_P0003238	0.87143165	A	0.87584466	A	0.996945808123124	0	lncRNA	TCONS_00006905	NA	NA	NA	NA	XLOC_002722	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002722), lincRNA [TCONS_00006905]"	chr3:84039819-84039878	hs|3p12.1	Agilent_HUMAN_G3V2	TCONS_00006905	TCONS_00006905	chr3	 84039819	 84039878	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8255_PI429285431	0.9104613	A	0.9293188	A	0.987014031875303	0	lncRNA	9844-1_{1..585}	lnc-TBC1D22A-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TBC1D22A-4:3	chr22	 48086411	 48086995	+	lnc-TBC1D22A-4	lnc-TBC1D22A-4:3	ENSG00000224271	RP11-191L9.4	NA	NA	NA	inter
CUST_12907_PI429285431	1.2746488	A	1.3542948	A	0.946289813253686	0	lncRNA	14536-1_{1..215}	lnc-THUMPD3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THUMPD3-1:3	chr3	  9298443	  9298657	+	lnc-THUMPD3-1	lnc-THUMPD3-1:3	XLOC_002573	linc-THUMPD3	SRGAP3	NA	chr3:9288443-9291311	inter
CUST_45004_PI429285431	4.9262342	P	3.5535512	P	2.58951694670353	0	lncRNA	49508-2_{3001..3973}	"gi|215598858|ref|NR_024550.1| Homo sapiens cyclin D binding myb-like transcription factor 1 (DMTF1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|215598858|ref|NR_024550.1| Homo sapiens cyclin D binding myb-like transcription factor 1 (DMTF1), transcript variant 5, non-coding RNA"	Chr7	 86784677	 86785649	+	9988	NR_024550.1	NA	NA	NA	NA	NA	inter
CUST_48067_PI429285431	1.1838675	A	0.91483295	A	1.2050011723006	0	lncRNA	51943-1_{1..1361}	"gi|410170102|ref|XR_112445.3| PREDICTED: Homo sapiens uncharacterized LOC100507948, transcript variant 1 (LOC100507948), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170102|ref|XR_112445.3| PREDICTED: Homo sapiens uncharacterized LOC100507948, transcript variant 1 (LOC100507948), misc_RNA"	NA	NA	NA	NA	NA	XR_112445.3	NA	NA	NA	NA	NA	Unknown
CUST_32301_PI429285431	0.9040129	A	0.9171896	A	0.990908190281332	0	lncRNA	33984-1_{1..1788}	n338877|BC044944|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1303|NULL|-0.6987860|-0.3921546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338877|BC044944|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1303|NULL|-0.6987860|-0.3921546	chr2	 71601070	 71602857	+	NA	NA	NA	NA	ZNF638	NA	chr2:71591070-71613450	inner
CUST_33741_PI429285431	2.017625	A	2.9277716	A	0.532131015785671	0	lncRNA	35298-1_{1..1770}	n340519|CR604870|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2981|NULL|-0.9380780|-0.2538186	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340519|CR604870|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2981|NULL|-0.9380780|-0.2538186	chr5	 78280584	 78282353	+	NA	NA	NA	NA	ARSB	"hg19_refFlat_ARSB:range=chr5:78076220-782810715'pad=0,hg19_refFlat_ARSB:range=chr5:78076220-782810715'pad=0 3'pad=0 strand=- repeatMasking=none,-113.90;hg19_refFlat_ARSB:range=chr5:78111909-782810715'pad=0,hg19_refFlat_ARSB:range=chr5:78111909-782810715'pad=0 3'pad=0 strand=- repeatMasking=none,-113.90chr5:78270584-78282357"	NA	inner
LNCA_21_P0007554	2.5332718	A	3.3732061	P	0.558669010114909	0	lncRNA	TCONS_00020412	NA	NA	NA	NA	XLOC_009738	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009738), lincRNA [TCONS_00020412]"	chr12:49184290-49184349	hs|12q13.12	Agilent_HUMAN_G3V2	TCONS_00020412	TCONS_00020412	chr12	 49184290	 49184349	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005811	4.452606	P	4.248913	P	1.15164255113233	0	lncRNA	TCONS_00014957	NA	NA	NA	NA	XLOC_007036	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007036), lincRNA [TCONS_00014957]"	chr8:29248123-29248064	hs|8p12	Agilent_HUMAN_G3V2	TCONS_00014957	TCONS_00014957	chr8	 29248064	 29248123	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006220	8.018331	P	6.6307273	P	2.61643732395692	0	lncRNA	TCONS_00016144	NA	NA	NA	NA	XLOC_007542	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007542), lincRNA [TCONS_00016144]"	chr9:121739674-121742600	hs|9q33.1	Agilent_HUMAN_G3V2	TCONS_00016144	TCONS_00016144	chr9	121739674	121742600	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9700_PI429285431	3.348602	P	3.7582967	P	0.752782659087084	0	lncRNA	11216-1_{1..224}	lnc-RP11-295D22.1.1-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-295D22.1.1-6:2	chr9	121738563	121738786	+	lnc-RP11-295D22.1.1-6	lnc-RP11-295D22.1.1-6:2	XLOC_007542	linc-CEP110-9	NA	NA	NA	inter
CUST_38347_PI429285431	0.92058533	A	0.90624446	A	1.00998990283212	0	lncRNA	39391-3_{6001..6077}	n382094|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vnl.2||-1.0184300|-0.3283965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382094|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vnl.2||-1.0184300|-0.3283965	chr13	 99059669	 99059745	+	NA	NA	NA	NA	FARP1	NA	chr13:99043669-99069746	inner
CUST_39726_PI429285431	1.9555107	A	1.9597454	A	0.997069033328677	0	lncRNA	40656-1_{1..1518}	n405691|NR_002927|lncRNA|Homosapiens||RefGeneNoncode|NR_002927||11.2612000|-0.1459307	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405691|NR_002927|lncRNA|Homosapiens||RefGeneNoncode|NR_002927||11.2612000|-0.1459307	chr15	 58983301	 58984818	-	NA	NA	NA	NA	ADAM10	NA	chr15:58973301-58995324	inner
CUST_42159_PI429285431	12.272604	P	12.166116	P	1.07660423085118	0	lncRNA	44193-1_{1..91}	ENST00000579577 ncrna:miRNA chromosome:GRCh37:4:7461755:7461845:1 gene:ENSG00000266690 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579577 ncrna:miRNA chromosome:GRCh37:4:7461755:7461845:1 gene:ENSG00000266690 gene_biotype:miRNA transcript_biotype:miRNA	chr4	  7461755	  7461845	+	ENSG00000266690	ENST00000579577	NA	NA	SORCS2	NA	chr4:7451755-7471845	inner
CUST_14827_PI429285431	3.529785	P	3.5583854	P	0.980370922458681	0	lncRNA	16490-1_{1..940}	lnc-AC009365.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC009365.3.1-1:1	chr7	132356773	132357712	+	lnc-AC009365.3.1-1	lnc-AC009365.3.1-1:1	XLOC_006254	linc-EXOC4-4	NA	NA	NA	inter
CUST_52050_PI429285431	3.9471912	P	3.587264	A	1.2833611360954	0	lncRNA	55583-1_{1..1056}	hg19_lincRNAsTranscripts_TCONS_l2_00017238 range=chr21:40360506-40361771 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017238 range=chr21:40360506-40361771 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 40360506	 40361561	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9486_PI429285431	0.9186528	A	1.2582191	A	0.790278848150954	0	lncRNA	10993-1_{1..660}	lnc-CLDN5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLDN5-1:3	chr22	 19552389	 19553048	-	lnc-CLDN5-1	lnc-CLDN5-1:3	XLOC_014297	linc-CLDN5-2	NA	NA	NA	inter
CUST_16003_PI429285431	4.7561584	P	5.433103	P	0.62548855857742	0	lncRNA	17700-1_{1..504}	lnc-ARHGEF9-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGEF9-1:3	chrX	 62780712	 62781215	-	lnc-ARHGEF9-1	lnc-ARHGEF9-1:3	XLOC_008174	linc-SPIN4	NA	NA	NA	inter
CUST_8448_PI429285431	2.0716703	A	1.3524445	A	1.64629833688246	0	lncRNA	10017-1_{1..2836}	lnc-ARF6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARF6-2:1	chr14	 50473622	 50476457	+	lnc-ARF6-2	lnc-ARF6-2:1	ENSG00000248297	ENST00000508586	C14orf182	"hg19_refFlat_C14orf182:range=chr14:50459022-504725175'pad=0,hg19_refFlat_C14orf182:range=chr14:50459022-504725175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40chr14:50463622-50474238"	NA	inner
CUST_24315_PI429285431	10.077599	P	10.430309	P	0.783111695818925	0	lncRNA	25867-1_{1..686}	lnc-DSTYK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DSTYK-1:1	chr1	205205633	205206318	-	lnc-DSTYK-1	lnc-DSTYK-1:1	ENSG00000225063.1	RP11-383G10.5	TMCC2	NA	chr1:205195633-205215995	inner
CUST_30182_PI429285431	1.3792262	A	0.92431337	A	1.37069998253707	0	lncRNA	31956-1_{1..215}	n334882|AJ459835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248092_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248092_04|-1.0651500|-0.3333711	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334882|AJ459835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248092_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248092_04|-1.0651500|-0.3333711	chr6	 29426131	 29426345	+	NA	NA	NA	NA	OR2H1	NA	chr6:29426230-29432099	inner
CUST_46087_PI429285431	6.6850758	P	6.0108523	P	1.59573766958882	0	lncRNA	50354-2_{3001..3262}	"gi|342672085|ref|NR_040718.1| Homo sapiens Ras association (RalGDS/AF-6) domain family member 3 (RASSF3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|342672085|ref|NR_040718.1| Homo sapiens Ras association (RalGDS/AF-6) domain family member 3 (RASSF3), transcript variant 2, non-coding RNA"	Chr12	 65007293	 65007554	+	283349	NR_040718.1	NA	NA	NA	NA	NA	inter
CUST_8865_PI429285431	1.050028	A	1.9040637	A	0.553234986380978	0	lncRNA	10404-1_{1..2179}	lnc-RALA-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RALA-1:8	chr7	 39833115	 39835293	+	lnc-RALA-1	lnc-RALA-1:8	ENSG00000188185	NCRNA00265	NA	NA	NA	inter
CUST_17060_PI429285431	3.5665498	P	3.9580557	P	0.762333457494483	0	lncRNA	18769-1_{1..622}	lnc-NRSN1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NRSN1-3:1	chr6	 23370187	 23370808	+	lnc-NRSN1-3	lnc-NRSN1-3:1	XLOC_005201	linc-NRSN1-4	NA	NA	NA	inter
CUST_29507_PI429285431	1.6510088	A	2.510431	A	0.551173258873151	0	lncRNA	31265-1_{1..574}	n332940|AF087970|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067518|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067518|0.3659700|-0.2876833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332940|AF087970|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067518|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067518|0.3659700|-0.2876833	chr15	 51034899	 51035472	-	NA	NA	NA	NA	SPPL2A	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr15:51024899-51045473"	NA	inner
CUST_3830_PI429285431	0.90038484	A	0.89301515	A	1.00512134935134	0	lncRNA	3797-1_{1..589}	"transcript_id ""ENST00000531977.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531977.1"" | genecode_v17"	chr10	127397575	127398163	-	ENSG00000224023.6	ENST00000531977.1	RP11-383C5.4	RP11-383C5.4-004	C10orf137	NA	chr10:127408084-127418017	inter
CUST_4157_PI429285431	4.1307573	P	4.482424	P	0.78367821604582	0	lncRNA	4115-1_{1..602}	"transcript_id ""ENST00000539795.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539795.1"" | genecode_v17"	chr12	  8474549	  8475150	+	ENSG00000256101.1	ENST00000539795.1	RP11-90D4.3	RP11-90D4.3-001	NA	NA	NA	inter
CUST_9628_PI429285431	2.668475	A	2.6795373	P	0.992361520544178	0	lncRNA	11145-1_{1..1213}	lnc-TASP1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TASP1-5:1	chr20	 12917380	 12918592	-	lnc-TASP1-5	lnc-TASP1-5:1	XLOC_013658	linc-JAG1-9	NA	NA	NA	inter
CUST_43414_PI429285431	7.095005	P	7.9547195	P	0.551061598668247	0	lncRNA	48226-1_{1..2341}	"gi|223633933|ref|NR_026850.1| Homo sapiens myotubularin related protein 9-like, pseudogene (MTMR9LP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223633933|ref|NR_026850.1| Homo sapiens myotubularin related protein 9-like, pseudogene (MTMR9LP), non-coding RNA"	Chr1	 32697261	 32699601	-	339483	NR_026850.1	NA	NA	NA	NA	NA	inter
CUST_30346_PI429285431	0.87307954	A	0.8784711	A	0.996269829821247	0	lncRNA	32122-1_{1..578}	n335341|AY671091|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000256374|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000256374|-1.0480300|-0.1500568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335341|AY671091|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000256374|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000256374|-1.0480300|-0.1500568	chr14	106322129	106322706	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5886_PI429285431	0.9082733	A	0.9137262	A	0.996227471671746	0	lncRNA	5817-1_{1..1754}	"transcript_id ""ENST00000509950.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509950.1"" | genecode_v17"	chr17	 47535223	 47536976	-	ENSG00000249497.1	ENST00000509950.1	RP11-1079K10.5	RP11-1079K10.5-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70"	NA	inter
LNCA_21_P0011218	7.289772	P	7.6157227	P	0.797772500949601	0	lncRNA	AK127292	NA	AK127292	NA	NA	FLJ46358	putative uncharacterized protein FLJ46358	NA	THC2670155	NA	"BROAD Institute lincRNA (XLOC_l2_003905), lincRNA [TCONS_l2_00007495]"	chr13:24481875-24481816	hs|13q12.12	Agilent_HUMAN_G3V2	AK127292	AK127292	chr13	 24481816	 24481875	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49798_PI429285431	3.6925807	P	3.7653189	P	0.950831629123008	0	lncRNA	53555-1_{1..426}	hg19_lincRNAsTranscripts_TCONS_l2_00025916 range=chr7:63093065-63096994 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025916 range=chr7:63093065-63096994 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 63093065	 63093490	+	NA	NA	NA	NA	LOC402269	NA	chr7:63092986-63106994	inter
CUST_17325_PI429285431	1.6437193	A	1.4352404	A	1.15546927682928	0	lncRNA	19043-1_{1..360}	lnc-PXDC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PXDC1-2:1	chr6	  3632263	  3632622	-	lnc-PXDC1-2	lnc-PXDC1-2:1	XLOC_005584	linc-SLC22A23	NA	NA	NA	inter
LNCA_21_P0005440	0.87512535	A	0.8766532	A	0.998941535649169	0	lncRNA	TCONS_00013619	NA	NA	NA	NA	XLOC_006283	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006283), lincRNA [TCONS_00013619]"	chr7:144741264-144854051	hs|7q35	Agilent_HUMAN_G3V2	TCONS_00013619	TCONS_00013619	chr7	144741264	144854051	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007450	2.646	A	3.315422	P	0.62875854204388	0	lncRNA	THC2681760	NA	NA	NA	NA	XLOC_009284	NA	NA	THC2681760	NA	"BROAD Institute lincRNA (XLOC_009284), lincRNA [TCONS_00019998]"	chr11:115794508-115794567	hs|11q23.3	Agilent_HUMAN_G3V2	THC2681760	THC2681760	chr11	115794508	115794567	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0000998	2.3925815	A	1.6398822	A	1.68494243093666	0	lncRNA	ENST00000414923	NA	NA	NA	NA	XLOC_000324	NA	ENST00000414923	THC2677347	NA	"BROAD Institute lincRNA (XLOC_000324), lincRNA [TCONS_00000264]"	chr1:103967935-103967994	hs|1p21.1	Agilent_HUMAN_G3V2	ENST00000414923	ENST00000414923	chr1	103967935	103967994	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6439_PI429285431	0.8860874	A	0.9544232	A	0.953737533884333	0	lncRNA	6380-1_{1..561}	"transcript_id ""ENST00000587702.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587702.1"" | genecode_v17"	chr19	 31437488	 31438048	+	ENSG00000267378.1	ENST00000587702.1	CTC-400I9.3	CTC-400I9.3-001	NA	NA	NA	inter
CUST_26987_PI429285431	0.8978715	A	0.87566495	A	1.01551148078406	0	lncRNA	28513-1_{1..793}	n324080|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000143938|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000143938|-1.2368200|-0.4419227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324080|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000143938|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000143938|-1.2368200|-0.4419227	chr9	 65620352	 65621144	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13573_PI429285431	0.8788237	A	1.3272921	A	0.732820415060574	0	lncRNA	15214-1_{1..2189}	lnc-HS1BP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HS1BP3-1:1	chr2	 20739630	 20741818	-	lnc-HS1BP3-1	lnc-HS1BP3-1:1	XLOC_002010	linc-PUM2-2	HS1BP3	NA	chr2:20729630-20749937	inter
CUST_8957_PI429285431	6.757044	P	7.019112	P	0.833891738238563	0	lncRNA	10491-1_{1..451}	lnc-ZNF467-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF467-1:1	chr7	149577458	149577908	-	lnc-ZNF467-1	lnc-ZNF467-1:1	ENSG00000204934	RP4-751H13.6	ATP6V0E2	NA	chr7:149570057-149577787	inner
CUST_38312_PI429285431	1.8098471	A	2.9026918	A	0.46883601371998	0	lncRNA	39361-2_{3001..3477}	n381996|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uqu.2||0.0221923|-0.4414546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381996|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uqu.2||0.0221923|-0.4414546	chr13	 26966891	 26967367	+	NA	NA	NA	NA	CDK8	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-24.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chr13:26953891-26977368"	NA	inner
CUST_35209_PI429285431	1.0296535	A	1.3096246	A	0.823607515569795	0	lncRNA	36609-1_{1..1621}	n342195|BC031557|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4685|NULL|-0.9846520|-0.2809052	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342195|BC031557|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4685|NULL|-0.9846520|-0.2809052	chr13	 79205515	 79207135	-	NA	NA	NA	NA	RNF219	NA	chr13:79195515-79217056	inner
CUST_3742_PI429285431	2.7003438	A	2.2453816	A	1.37074688962008	0	lncRNA	3711-1_{1..381}	"transcript_id ""ENST00000416341.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416341.1"" | genecode_v17"	chr10	 80112354	 80112734	+	ENSG00000230229.1	ENST00000416341.1	RP11-90J7.4	RP11-90J7.4-001	NA	NA	NA	inter
CUST_39005_PI429285431	1.5668688	A	1.4847126	A	1.05859900275033	0	lncRNA	39985-1_{1..2143}	n385305|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wfy.3||4.9523300|-0.1684094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385305|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wfy.3||4.9523300|-0.1684094	chr7	149244244	149246386	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3358621	0.87814146	A	1.3122847	A	0.740133160193283	0	lncRNA	XR_109916	XR_109916	XR_109916	100506036	NA	LOC100506036	uncharacterized LOC100506036	NA	THC2519197	NA	"PREDICTED: Homo sapiens hypothetical LOC100506036 (LOC100506036), miscRNA [XR_109916]"	chr2:97478051-97477992	hs|2q11.2	Agilent_HUMAN_G3V2	XR_109916	XR_109916	chr2	 97477992	 97478051	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48121_PI429285431	1.9143906	A	1.109216	A	1.74735725032362	0	lncRNA	51992-1_{1..3000}	"gi|310110015|ref|XR_111092.1| PREDICTED: Homo sapiens uncharacterized LOC100130698 (LOC100130698), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310110015|ref|XR_111092.1| PREDICTED: Homo sapiens uncharacterized LOC100130698 (LOC100130698), misc_RNA"	NA	NA	NA	NA	NA	XR_111092.1	NA	NA	NA	"hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00"	NA	Unknown
CUST_45423_PI429285431	3.1984136	A	2.1020288	A	2.13818220882067	0	lncRNA	49845-2_{3001..3172}	"gi|224493716|ref|NR_027126.1| Homo sapiens RNA binding motif protein 18 (RBM18), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|224493716|ref|NR_027126.1| Homo sapiens RNA binding motif protein 18 (RBM18), transcript variant 3, non-coding RNA"	Chr9	125004834	125005005	-	92400	NR_027126.1	NA	NA	NA	NA	NA	inter
CUST_44202_PI429285431	1.8393339	A	2.0846097	A	0.843654499288735	0	lncRNA	48856-1_{1..1521}	"gi|386268040|ref|NR_047685.1| Homo sapiens gamma-aminobutyric acid (GABA) A receptor, rho 3 (GABRR3), transcript variant 1, non-coding, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386268040|ref|NR_047685.1| Homo sapiens gamma-aminobutyric acid (GABA) A receptor, rho 3 (GABRR3), transcript variant 1, non-coding, non-coding RNA"	Chr3	 97705527	 97707047	-	200959	NR_047685.1	NA	NA	NA	NA	NA	inter
CUST_15415_PI429285431	3.7551806	P	4.257321	P	0.706058486744916	0	lncRNA	17102-1_{1..567}	lnc-APBA1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-APBA1-3:2	chr9	 71921770	 71922336	-	lnc-APBA1-3	lnc-APBA1-3:2	XLOC_007724	linc-PRKACG-1	NA	NA	NA	inter
CUST_16845_PI429285431	1.0338433	A	0.90463394	A	1.09369415990577	0	lncRNA	18553-1_{1..690}	lnc-SNURF-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNURF-3:6	chr15	 25361485	 25362174	+	lnc-SNURF-3	lnc-SNURF-3:6	XLOC_011184	linc-GABRA5-6	SNRPN	NA	chr15:25351485-25371586	inter
CUST_45471_PI429285431	2.1657813	A	1.4899441	A	1.59752355120229	0	lncRNA	49886-1_{1..1070}	"gi|375493561|ref|NR_046339.1| Homo sapiens chromosome 9 open reading frame 173 (C9orf173), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375493561|ref|NR_046339.1| Homo sapiens chromosome 9 open reading frame 173 (C9orf173), transcript variant 5, non-coding RNA"	Chr9	140145713	140146782	+	441476	NR_046339.1	NA	NA	NA	NA	NA	inter
CUST_7536_PI429285431	3.9031005	P	4.3904724	P	0.713323347639074	0	lncRNA	9173-1_{1..2610}	lnc-BHLHE41-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BHLHE41-2:8	chr12	 26110952	 26113561	-	lnc-BHLHE41-2	lnc-BHLHE41-2:8	ENSG00000246695	RP11-877E17.2	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.32;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-57.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40"	NA	inter
CUST_4069_PI429285431	3.5856955	P	3.7606237	P	0.885811603048496	0	lncRNA	4030-2_{3001..4140}	"transcript_id ""ENST00000561746.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561746.1"" | genecode_v17"	chr11	107185858	107186997	-	ENSG00000261098.1	ENST00000561746.1	RP11-819C21.1	RP11-819C21.1-001	NA	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-22.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10"	NA	inter
LNCA_21_P0013203	2.1346726	A	0.9224419	A	2.31695608502453	0	lncRNA	TCONS_l2_00025908	NA	NA	NA	NA	XLOC_l2_013427	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013427), lincRNA [TCONS_l2_00025908]"	chr7:62837851-62837910	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025908	TCONS_l2_00025908	chr7	 62837851	 62837910	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33000_PI429285431	7.7737503	P	6.694738	P	2.11258926195101	0	lncRNA	34615-1_{1..2227}	n339682|BC041913|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2127|NULL|-1.0567600|-0.5068348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339682|BC041913|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2127|NULL|-1.0567600|-0.5068348	chr3	170112404	170114630	+	NA	NA	NA	NA	SKIL	NA	chr3:170102404-170110950	inner
LNCA_19_P00319064	3.501111	P	3.8112907	P	0.806541291352758	0	lncRNA	ENST00000417213	NA	NA	NA	NA	XLOC_l2_007967	NA	ENST00000417213	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007967), lincRNA [TCONS_l2_00015764]"	chr2:38366055-38365996	hs|2p22.2	Agilent_HUMAN_G3V2	ENST00000417213	ENST00000417213	chr2	 38365996	 38366055	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40811_PI429285431	5.9915075	P	5.625878	P	1.28844370143914	0	lncRNA	41516-1_{1..2360}	n410579|NR_037846_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037846_2||-0.3474440|-0.3241100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410579|NR_037846_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037846_2||-0.3474440|-0.3241100	chr6	  3001362	  3003721	+	NA	NA	NA	NA	NQO2	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50chr6:3000067-3019994"	NA	inner
CUST_4005_PI429285431	4.5940742	P	4.2599506	P	1.26061138730545	0	lncRNA	3966-1_{1..432}	"transcript_id ""ENST00000534086.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534086.1"" | genecode_v17"	chr11	 69831982	 69832413	+	ENSG00000255191.1	ENST00000534086.1	RP11-626H12.1	RP11-626H12.1-001	LOC100127946	NA	chr11:69830650-69866574	inter
LNCA_21_P0008266	7.1656947	P	6.844145	P	1.24967218880495	0	lncRNA	TCONS_00022316	NA	NA	NA	NA	XLOC_010730	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010730), lincRNA [TCONS_00022316]"	chr13:112837248-112837189	hs|13q34	Agilent_HUMAN_G3V2	TCONS_00022316	TCONS_00022316	chr13	112837189	112837248	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51047_PI429285431	2.9356384	A	2.1427398	A	1.73255193589283	0	lncRNA	54689-1_{1..344}	hg19_lincRNAsTranscripts_TCONS_l2_00007067 range=chr13:21886393-21886905 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007067 range=chr13:21886393-21886905 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 21886393	 21886736	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12131_PI429285431	2.5997481	A	1.7932715	A	1.74893491294759	0	lncRNA	13728-1_{1..480}	lnc-MCCC2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MCCC2-2:2	chr5	 70966298	 70966777	+	lnc-MCCC2-2	lnc-MCCC2-2:2	XLOC_004420	linc-CARTPT	NA	NA	NA	inter
CUST_31187_PI429285431	2.4609845	A	0.98962337	A	2.7728337697647	0	lncRNA	32981-2_{3001..6000}	n337627|AL833277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|6|NULL|-1.0345400|-0.3490206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337627|AL833277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|6|NULL|-1.0345400|-0.3490206	chrX	 11111270	 11114269	-	NA	NA	NA	NA	ARHGAP6	NA	chrX:11155663-11160108	inner
CUST_35587_PI429285431	1.0190736	A	0.95407397	A	1.04608467150896	0	lncRNA	37001-1_{1..368}	n342721|AX750576|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5224|NULL|-1.2868900|-0.3741289	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342721|AX750576|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5224|NULL|-1.2868900|-0.3741289	chr17	 66263169	 66263536	+	NA	NA	NA	NA	ARSG	NA	chr17:66255323-66273537	inner
CUST_43315_PI429285431	1.1676815	A	1.6027734	A	0.73964663746586	0	lncRNA	48146-1_{1..659}	ENST00000600516 havana:lincRNA chromosome:GRCh37:10:10969021:10988765:-1 gene:ENSG00000229240 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000600516 havana:lincRNA chromosome:GRCh37:10:10969021:10988765:-1 gene:ENSG00000229240 gene_biotype:lincRNA transcript_biotype:lincRNA	chr10	 10969021	 10969679	-	ENSG00000229240	ENST00000600516	NA	NA	NA	NA	NA	inter
CUST_40393_PI429285431	5.27115	P	3.968166	P	2.46738697527005	0	lncRNA	41184-2_{3001..4374}	n409250|NR_033417|lncRNA|Homosapiens||RefGeneNoncode|NR_033417||2.3534800|-0.3260915	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n409250|NR_033417|lncRNA|Homosapiens||RefGeneNoncode|NR_033417||2.3534800|-0.3260915	chr5	 69714196	 69715569	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-23.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-31.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90"	NA	inter
CUST_27971_PI429285431	0.8971352	A	1.1794665	A	0.822261223241597	0	lncRNA	29575-1_{1..638}	n325220|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329587|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329587|-1.2752000|-0.3551348	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325220|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329587|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329587|-1.2752000|-0.3551348	chr2	103092648	103093285	-	NA	NA	NA	NA	SLC9A4	NA	chr2:103089762-103150431	inner
CUST_24377_PI429285431	0.8806366	A	0.9142225	A	0.976988916044561	0	lncRNA	25930-1_{1..429}	lnc-PTGES-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTGES-1:1	chr9	132480852	132481280	-	lnc-PTGES-1	lnc-PTGES-1:1	ENSG00000236024.1	RP11-483H20.6	PRRX2	NA	chr9:132470852-132484953	inner
CUST_44893_PI429285431	7.6070085	P	8.746195	P	0.454015513596613	0	lncRNA	49415-1_{1..783}	"gi|335353772|ref|NR_038367.1| Homo sapiens HOXA transcript antisense RNA, myeloid-specific 1 (HOTAIRM1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|335353772|ref|NR_038367.1| Homo sapiens HOXA transcript antisense RNA, myeloid-specific 1 (HOTAIRM1), transcript variant 2, non-coding RNA"	Chr7	 27135713	 27136495	+	100506311	NR_038367.1	NA	NA	NA	NA	NA	inter
CUST_2912_PI429285431	1.526889	A	1.1069133	A	1.33790501962459	0	lncRNA	2893-1_{1..468}	"transcript_id ""ENST00000441991.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441991.1"" | genecode_v17"	chr7	116211206	116211673	-	ENSG00000231210.2	ENST00000441991.1	AC006159.3	AC006159.3-002	CAV1	NA	chr7:116201206-116201239	inter
LNCA_21_P0002631	1.6085365	A	0.8871321	A	1.64878627430731	0	lncRNA	BC049373	NA	BC049373	NA	Hs.420716	LOC151300	uncharacterized LOC151300	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001866), lincRNA [TCONS_00005020]"	chr2:219844291-219844350	hs|2q35	Agilent_HUMAN_G3V2	BC049373	BC049373	chr2	219844291	219844350	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011930	0.878287	A	0.8859048	A	0.994733659458556	0	lncRNA	ENST00000452230	XR_109955	XR_109955	NA	Hs.722974	XLOC_l2_008124	NA	ENST00000452230	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100132330, transcript variant 2 (LOC100132330), miscRNA [XR_109955]"	chr2:89110966-89110907	hs|2p11.2	Agilent_HUMAN_G3V2	ENST00000452230	ENST00000452230	chr2	 89110907	 89110966	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18254_PI429285431	0.9070953	A	0.89559066	A	1.00800628906284	0	lncRNA	19989-1_{1..608}	lnc-BX284668.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BX284668.1-2:2	chr1	 17179257	 17179864	-	lnc-BX284668.1-2	lnc-BX284668.1-2:2	ENSG00000223643	RP11-108M9.1	NA	NA	NA	inter
CUST_8323_PI429285431	1.9815404	A	2.3316548	A	0.784521885953349	0	lncRNA	9907-1_{1..3000}	lnc-DBN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DBN1-1:1	chr5	176878809	176881808	-	lnc-DBN1-1	lnc-DBN1-1:1	ENSG00000248342	AC145098.1	PRR7	NA	chr5:176873796-176883287	inner
CUST_9562_PI429285431	4.2333508	P	4.4900813	P	0.836982579075826	0	lncRNA	11077-1_{1..3000}	lnc-HAND2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HAND2-3:1	chr4	174619866	174622865	-	lnc-HAND2-3	lnc-HAND2-3:1	XLOC_004167	linc-MORF4-3	NA	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.51;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10"	NA	inter
CUST_16171_PI429285431	0.9079272	A	0.8820648	A	1.01808809289279	0	lncRNA	17877-1_{1..2533}	lnc-SAMD14-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SAMD14-3:1	chr17	 48132993	 48135525	-	lnc-SAMD14-3	lnc-SAMD14-3:1	XLOC_012509	linc-DLX3-2	ITGA3	NA	chr17:48133340-48143103	inter
CUST_4379_PI429285431	0.8928779	A	1.3549845	A	0.725925499705696	0	lncRNA	4331-3_{6001..9000}	"transcript_id ""ENST00000504409.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000504409.3"" | genecode_v17"	chr12	 92866227	 92869226	+	ENSG00000205056.8	ENST00000504409.3	RP11-693J15.5	RP11-693J15.5-001	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.91;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.56;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.21;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_39723_PI429285431	0.8963603	A	0.8928939	A	1.00240561424458	0	lncRNA	40654-1_{1..3000}	n405665|NR_002833|lncRNA|Homosapiens||RefGeneNoncode|NR_002833||1.5638400|-0.4175826	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405665|NR_002833|lncRNA|Homosapiens||RefGeneNoncode|NR_002833||1.5638400|-0.4175826	chr7	 35129455	 35132454	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5426_PI429285431	2.4258385	A	3.015721	P	0.664397016522714	0	lncRNA	5360-1_{1..887}	"transcript_id ""ENST00000573037.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000573037.1"" | genecode_v17"	chr16	 11913687	 11914573	-	ENSG00000262117.1	ENST00000573037.1	BCAR4	BCAR4-004	RSL1D1	NA	chr16:11928053-11932689	inter
CUST_12830_PI429285431	0.8742442	A	0.87536377	A	0.999224274241975	0	lncRNA	14457-1_{1..273}	lnc-CRYBG3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBG3-1:1	chr3	 97693710	 97693982	+	lnc-CRYBG3-1	lnc-CRYBG3-1:1	XLOC_002731	linc-OR5AC2-2	MINA	NA	chr3:97683710-97691295	inter
CUST_50116_PI429285431	9.158579	P	8.375943	P	1.72027117245855	0	lncRNA	53846-1_{1..805}	hg19_lincRNAsTranscripts_TCONS_l2_00028806 range=chr9:69066564-69087349 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028806 range=chr9:69066564-69087349 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69066564	 69067368	+	NA	NA	NA	NA	LOC100507370	NA	chr9:69065490-69089939	inter
LNCA_21_P0002414	1.4897919	A	1.9329492	A	0.73552317295529	0	lncRNA	TCONS_00004180	NA	NA	NA	NA	XLOC_002019	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002019), lincRNA [TCONS_00004180]"	chr2:23429507-23429448	hs|2p24.1	Agilent_HUMAN_G3V2	TCONS_00004180	TCONS_00004180	chr2	 23429448	 23429507	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00802464	5.828025	P	6.047619	P	0.858807085996304	0	lncRNA	TCONS_00012372	NA	NA	NA	NA	XLOC_005939	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005939), lincRNA [TCONS_00012372]"	chr6:169828785-169828726	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012372	TCONS_00012372	chr6	169828726	169828785	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16599_PI429285431	1.0942708	A	0.8792565	A	1.16071541934337	0	lncRNA	18300-1_{1..583}	lnc-CNTRL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CNTRL-2:1	chr9	123560853	123561435	+	lnc-CNTRL-2	lnc-CNTRL-2:1	XLOC_007549	linc-CEP110-2	FBXW2	NA	chr9:123550853-123555740	inter
CUST_4044_PI429285431	1.4191697	A	2.1725845	A	0.59319781958246	0	lncRNA	4006-1_{1..679}	"transcript_id ""ENST00000532606.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532606.1"" | genecode_v17"	chr11	 87429246	 87429924	-	ENSG00000255183.1	ENST00000532606.1	RP11-720D4.3	RP11-720D4.3-001	NA	NA	NA	inter
LNCA_21_P0003735	6.9201455	P	6.2923617	P	1.54518952228344	0	lncRNA	ENST00000507759	NA	NA	NA	NA	XLOC_003917	NA	ENST00000507759	NA	NA	"BROAD Institute lincRNA (XLOC_003917), lincRNA [TCONS_00008455]"	chr4:28364002-28363943	hs|4p15.1	Agilent_HUMAN_G3V2	ENST00000507759	ENST00000507759	chr4	 28363943	 28364002	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1007_PI429285431	0.89935315	A	0.89278847	A	1.00456065772051	0	lncRNA	996-1_{1..616}	"transcript_id ""ENST00000413708.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413708.1"" | genecode_v17"	chr2	107978775	107979390	+	ENSG00000225588.2	ENST00000413708.1	AC096669.1	AC096669.1-001	NA	NA	NA	inter
LNCA_33_P3380252	0.8786116	A	2.32891	A	0.365945725730536	0	lncRNA	XR_108461	XR_108461	XR_108461	   151760	Hs.124136	LOC151760	uncharacterized LOC151760	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC151760 (LOC151760), miscRNA [XR_108461]"	chr3:110610936-110610877	hs|3q13.13	Agilent_HUMAN_G3V2	XR_108461	XR_108461	chr3	110610877	110610936	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36545_PI429285431	1.7107842	A	1.323945	A	1.30752560613869	0	lncRNA	37741-1_{1..459}	n345043|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_592|NULL|-1.6758500|-0.2679639	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345043|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_592|NULL|-1.6758500|-0.2679639	chr9	  5625224	  5625682	+	NA	NA	NA	NA	KIAA1432	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30chr9:5629119-5635683"	NA	inter
CUST_1857_PI429285431	2.1135013	A	2.580463	A	0.723486649468925	0	lncRNA	1847-1_{1..576}	"transcript_id ""ENST00000442020.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442020.1"" | genecode_v17"	chr4	118755556	118756131	+	ENSG00000229565.1	ENST00000442020.1	AC108056.1	AC108056.1-001	NA	NA	NA	inter
CUST_177_PI429201921	0.8971397	A	1.612149	A	0.609201204750232	0	lncRNA	147-2_{3001..4545}	TC03002976.hg.1	TCONS_l2_00019359-XLOC_l2_010246 // Broad TUCP // linc-CNTN3-4 chr3:-:75668378-75672924 // chr3 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr3:-:75668378-75672924	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00019359-XLOC_l2_010246	linc-CNTN3-4	chr3	 75668378	 75672924	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48731_PI429285431	1.5396602	A	2.3977485	A	0.55168310328066	0	lncRNA	52570-1_{1..564}	hg19_lincRNAsTranscripts_TCONS_l2_00015969 range=chr2:131176732-131185315 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015969 range=chr2:131176732-131185315 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	131176732	131177295	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48569_PI429285431	4.2326994	P	4.4113426	P	0.88353353548354	0	lncRNA	52417-1_{1..815}	hg19_lincRNAsTranscripts_TCONS_l2_00013423 range=chr2:742210-748548 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013423 range=chr2:742210-748548 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	   742210	   743024	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41709_PI429285431	0.9092012	A	0.92501014	A	0.9891018971428	0	lncRNA	43214-1_{1..80}	ENST00000410389 ncrna:miRNA chromosome:GRCh37:X:113886019:113886098:1 gene:ENSG00000222321 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410389 ncrna:miRNA chromosome:GRCh37:X:113886019:113886098:1 gene:ENSG00000222321 gene_biotype:miRNA transcript_biotype:miRNA	chrX	113886019	113886098	+	ENSG00000222321	ENST00000410389	NA	NA	HTR2C	NA	chrX:113876019-113896098	inner
CUST_44054_PI429285431	7.374165	P	7.7452507	P	0.773200405889009	0	lncRNA	48729-1_{1..481}	"gi|386642901|ref|NR_047698.1| Homo sapiens VWC2L intronic transcript 1 (non-protein coding) (VWC2L-IT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|386642901|ref|NR_047698.1| Homo sapiens VWC2L intronic transcript 1 (non-protein coding) (VWC2L-IT1), non-coding RNA"	Chr2	215374906	215375386	+	100885780	NR_047698.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014515	0.9001657	A	0.925792	A	0.982394030951879	0	lncRNA	XR_110176	XR_110176	XR_110176	NA	Hs.666518	LOC100507390	uncharacterized LOC100507390	NA	THC2671245	NA	"PREDICTED: Homo sapiens hypothetical LOC100507390 (LOC100507390), miscRNA [XR_110176]"	chr6:136969274-136969333	hs|6q23.3	Agilent_HUMAN_G3V2	XR_110176	XR_110176	chr6	136969274	136969333	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39994_PI429285431	13.614459	P	13.447058	P	1.12303352813335	0	lncRNA	40860-1_{1..809}	n407109|NR_024611|lncRNA|Homosapiens||RefGeneNoncode|NR_024611||1.3092900|-0.2933243	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407109|NR_024611|lncRNA|Homosapiens||RefGeneNoncode|NR_024611||1.3092900|-0.2933243	chr5	130494874	130495682	-	NA	NA	NA	NA	HINT1	NA	chr5:130494875-130501034	inter
CUST_18889_PI429285431	5.9870453	P	6.039787	P	0.964102405103611	0	lncRNA	20582-1_{1..453}	lnc-KLF14-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KLF14-2:8	chr7	130668812	130669264	-	lnc-KLF14-2	lnc-KLF14-2:8	ENSG00000231721	AC058791.2	NA	NA	NA	inter
CUST_45888_PI429285431	0.9900849	A	0.91871476	A	1.050714082211	0	lncRNA	50207-1_{1..3000}	"gi|403048748|ref|NR_073143.1| Homo sapiens progesterone receptor (PGR), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|403048748|ref|NR_073143.1| Homo sapiens progesterone receptor (PGR), transcript variant 6, non-coding RNA"	Chr11	100900355	100903354	-	5241	NR_073143.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0004964	0.9055921	A	0.92952955	A	0.983544716016832	0	lncRNA	TCONS_00012006	NA	NA	NA	NA	XLOC_005521	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005521), lincRNA [TCONS_00012006]"	chr6:159552077-159552136	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_00012006	TCONS_00012006	chr6	159552077	159552136	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11368_PI429285431	2.2617903	A	0.92855185	A	2.51967637997439	0	lncRNA	12932-1_{1..220}	lnc-SOD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOD1-1:1	chr21	 32997381	 32997600	+	lnc-SOD1-1	lnc-SOD1-1:1	XLOC_013911	linc-SOD1-1	NA	NA	NA	inter
CUST_44450_PI429285431	0.8889185	A	0.90173215	A	0.991157580815716	0	lncRNA	49057-1_{1..3000}	"gi|359279888|ref|NR_045582.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 11, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|359279888|ref|NR_045582.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 11, non-coding RNA"	Chr4	159442866	159445865	+	59350	NR_045582.1	NA	NA	NA	NA	NA	inter
CUST_7338_PI429285431	0.8891385	A	0.90163255	A	0.991377176117483	0	lncRNA	8847-1_{1..333}	"transcript_id ""ENST00000362348.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000362348.1"" | genecode_v17"	chr20	 51714191	 51714523	+	ENSG00000199218.1	ENST00000362348.1	RN7SKP184	RN7SKP184-201	TSHZ2	NA	chr20:51704191-51724523	inner
CUST_36507_PI429285431	0.9088803	A	1.6757181	A	0.58770423518524	0	lncRNA	37706-1_{1..618}	n345007|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_556|NULL|-1.4107000|-0.4160552	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345007|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_556|NULL|-1.4107000|-0.4160552	chr8	 90903119	 90903736	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23437_PI429285431	0.90852636	A	1.0737257	A	0.891805288423031	0	lncRNA	25005-1_{1..545}	lnc-SZT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SZT2-1:1	chr1	 43922249	 43922793	+	lnc-SZT2-1	lnc-SZT2-1:1	ENSG00000229348.1	HYI-AS1	SZT2	NA	chr1:43912249-43919918	inter
CUST_33286_PI429285431	0.89424837	A	0.91033036	A	0.988914713636011	0	lncRNA	34869-1_{1..3000}	n339997|BC042983|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2450|NULL|0.2150130|-0.2440388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339997|BC042983|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2450|NULL|0.2150130|-0.2440388	chr10	 25401986	 25404985	+	NA	NA	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40"	NA	inter
CUST_34165_PI429285431	3.0692766	A	2.490099	A	1.49399736125897	0	lncRNA	35682-1_{1..521}	n341009|S75264|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3475|NULL|1.1460800|-0.1019907	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341009|S75264|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3475|NULL|1.1460800|-0.1019907	chr11	 32410603	 32411123	-	NA	NA	NA	NA	WT1	NA	chr11:32409321-32427949	inner
CUST_8176_PI429285431	1.9886792	A	1.9464116	A	1.02973106660873	0	lncRNA	9776-2_{3001..3533}	lnc-AC092295.7.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC092295.7.1-2:1	chr19	 37006324	 37006856	+	lnc-AC092295.7.1-2	lnc-AC092295.7.1-2:1	ENSG00000247034	ENST00000500856	ZNF260	"hg19_refFlat_ZNF260:range=chr19:37004902-370061405'pad=0,hg19_refFlat_ZNF260:range=chr19:37004902-370061405'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF146:range=chr19:36727343-367282215'pad=0,hg19_refFlat_ZNF146:range=chr19:36727343-367282215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20chr19:36993324-37015584"	NA	inner
CUST_17665_PI429285431	0.89224654	A	1.5256336	A	0.644661146277386	0	lncRNA	19393-1_{1..282}	lnc-RP11-181C3.1.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-181C3.1.1-1:5	chr12	 98897538	 98897819	-	lnc-RP11-181C3.1.1-1	lnc-RP11-181C3.1.1-1:5	XLOC_010167	linc-CDK17-4	NA	NA	NA	inter
CUST_33258_PI429285431	1.6099386	A	1.262413	A	1.27237647216677	0	lncRNA	34844-1_{1..3000}	n339964|D82344|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2417|NULL|2.4541800|-0.1702527	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339964|D82344|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2417|NULL|2.4541800|-0.1702527	chr4	 41746099	 41749098	-	NA	NA	NA	NA	PHOX2B	NA	chr4:41736099-41750987	inner
CUST_235_PI429201921	1.4658502	A	0.8936324	A	1.48680742702353	0	lncRNA	181-2_{3001..6000}	TC22001193.hg.1	TCONS_l2_00018301-XLOC_l2_009446 // Broad TUCP // linc-CCT8L2-1 chr22:-:17075906-17082026 // chr22 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr22:-:17075906-17082026	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00018301-XLOC_l2_009446	linc-CCT8L2-1	chr22	 17075906	 17082026	-	NA	NA	NA	NA	IFI6	NA	chr1:27992572-27998724	Unknown
CUST_43487_PI429285431	0.90974915	A	0.9234203	A	0.990568637853302	0	lncRNA	48281-1_{1..1819}	"gi|341915093|ref|XR_132797.1| PREDICTED: Homo sapiens uncharacterized LOC100507664 (LOC100507664), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915093|ref|XR_132797.1| PREDICTED: Homo sapiens uncharacterized LOC100507664 (LOC100507664), misc_RNA"	NA	NA	NA	NA	NA	XR_132797.1	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SSH1:range=chr12:109185876-1092211815'pad=0,hg19_refFlat_SSH1:range=chr12:109185876-1092211815'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SSH1:range=chr12:109185876-1092512725'pad=0,hg19_refFlat_SSH1:range=chr12:109185876-1092512725'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10"	NA	Unknown
CUST_22484_PI429285431	4.561226	P	4.829027	P	0.830584583944885	0	lncRNA	24071-1_{1..506}	lnc-GTDC1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTDC1-6:1	chr2	144329367	144329872	-	lnc-GTDC1-6	lnc-GTDC1-6:1	ENSG00000257640.1	RP11-570L15.2	ARHGAP15	NA	chr2:144319367-144339674	inner
CUST_14746_PI429285431	1.3710039	A	1.2131696	A	1.11561118201544	0	lncRNA	16410-1_{1..285}	lnc-FBXO5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXO5-1:1	chr6	153188572	153188856	-	lnc-FBXO5-1	lnc-FBXO5-1:1	XLOC_005882	linc-SYNE1-2	NA	NA	NA	inter
CUST_11835_PI429285431	1.9103358	A	3.6120508	P	0.307420440784886	0	lncRNA	13416-1_{1..3000}	lnc-FAM174B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-FAM174B-2:1	chr15	 93114431	 93117430	-	lnc-FAM174B-2	lnc-FAM174B-2:1	XLOC_011584	linc-VPS33B-3	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90"	NA	inter
CUST_41570_PI429285431	0.9119152	A	2.3782158	P	0.361909127837151	0	lncRNA	42888-1_{1..96}	ENST00000385139 ncrna:miRNA chromosome:GRCh37:11:28078362:28078457:1 gene:ENSG00000207874 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385139 ncrna:miRNA chromosome:GRCh37:11:28078362:28078457:1 gene:ENSG00000207874 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 28078362	 28078457	+	ENSG00000207874	ENST00000385139	NA	NA	KIF18A	NA	chr11:28068362-28088457	inner
CUST_16518_PI429285431	1.2637736	A	1.1244863	A	1.10136090257619	0	lncRNA	18219-1_{1..3000}	lnc-CDK5R2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK5R2-1:3	chr2	219842204	219845203	+	lnc-CDK5R2-1	lnc-CDK5R2-1:3	XLOC_001866	linc-FAM134A	FEV	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr2:219845809-219850379"	NA	inter
LNCA_21_P0002444	6.4231715	P	6.4382954	P	0.989571667425079	0	lncRNA	THC2669550	NA	NA	NA	NA	XLOC_002108	NA	NA	THC2669550	NA	"BROAD Institute lincRNA (XLOC_002108), lincRNA [TCONS_00004266]"	chr2:060622085-060622026	hs|2p16.1	Agilent_HUMAN_G3V2	THC2669550	THC2669550	chr2	 60622026	 60622085	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44156_PI429285431	3.0136669	A	3.376175	P	0.777811192478906	0	lncRNA	48817-1_{1..792}	"gi|397139024|ref|XR_158996.1| PREDICTED: Homo sapiens uncharacterized LOC100996656 (LOC100996656), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139024|ref|XR_158996.1| PREDICTED: Homo sapiens uncharacterized LOC100996656 (LOC100996656), misc_RNA"	NA	NA	NA	NA	NA	XR_158996.1	NA	NA	NA	NA	NA	Unknown
CUST_7912_PI429285431	1.5074685	A	2.2235608	A	0.608744062171672	0	lncRNA	9527-1_{1..736}	lnc-POM121L4P-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-POM121L4P-1:1	chr22	 21055220	 21055955	+	lnc-POM121L4P-1	lnc-POM121L4P-1:1	ENSG00000226287	TMEM191A	PI4KA	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00chr22:21061979-21065955"	NA	inter
CUST_50173_PI429285431	8.363843	P	8.55132	P	0.878140079722425	0	lncRNA	53899-1_{1..1366}	hg19_lincRNAsTranscripts_TCONS_l2_00029228 range=chr9:24542984-24546050 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029228 range=chr9:24542984-24546050 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 24542984	 24544349	-	NA	NA	NA	NA	NA	NA	NA	inner
CUST_5509_PI429285431	4.3565526	P	3.2167938	P	2.20344181390995	0	lncRNA	5440-1_{1..703}	"transcript_id ""ENST00000565523.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565523.1"" | genecode_v17"	chr16	 34378093	 34378795	+	ENSG00000261800.1	ENST00000565523.1	RP11-244B22.11	RP11-244B22.11-001	NA	NA	NA	inter
LNCA_21_P0003420	0.877831	A	2.766772	A	0.270005181778936	0	lncRNA	ENST00000515232	NA	NA	NA	NA	XLOC_003742	NA	ENST00000515232	NA	NA	"BROAD Institute lincRNA (XLOC_003742), lincRNA [TCONS_00007662]"	chr4:154005445-154012208	hs|4q31.3	Agilent_HUMAN_G3V2	ENST00000515232	ENST00000515232	chr4	154005445	154012208	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009556	0.8772784	A	0.8838929	A	0.995425672226472	0	lncRNA	TCONS_00026519	NA	NA	NA	NA	XLOC_012840	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012840), lincRNA [TCONS_00026519]"	chr18:45516818-45516759	hs|18q21.1	Agilent_HUMAN_G3V2	TCONS_00026519	TCONS_00026519	chr18	 45516759	 45516818	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010266	0.87705296	A	0.8833572	A	0.99563976735517	0	lncRNA	TCONS_00029067	NA	NA	NA	NA	XLOC_013993	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013993), lincRNA [TCONS_00029067]"	chr21:9517963-9517904	hs|21p11.2	Agilent_HUMAN_G3V2	TCONS_00029067	TCONS_00029067	chr21	  9517904	  9517963	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26641_PI429285431	2.496484	A	2.475536	A	1.01462597509483	0	lncRNA	28143-2_{3001..5652}	lnc-C4orf42-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C4orf42-1:4	chr4	  1247047	  1249698	+	lnc-C4orf42-1	lnc-C4orf42-1:4	ENSG00000196810.4	CTBP1-AS1	CTBP1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00chr4:1234047-1242908"	NA	inter
CUST_39526_PI429285431	2.5418375	A	2.7117891	A	0.888872500848611	0	lncRNA	40472-1_{1..721}	n387360|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011csa.1||1.1817400|-0.3703923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n387360|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011csa.1||1.1817400|-0.3703923	chr5	 70671611	 70672331	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21911_PI429285431	0.90611756	A	1.384074	A	0.717993933727952	0	lncRNA	23520-1_{1..514}	lnc-ATP6V1D-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATP6V1D-2:1	chr14	 67436393	 67436906	-	lnc-ATP6V1D-2	lnc-ATP6V1D-2:1	ENSG00000258490.1	RP11-862P13.1	GPHN	NA	chr14:67426393-67446533	inner
CUST_38500_PI429285431	7.971128	P	7.7621036	P	1.15590625599064	0	lncRNA	39514-1_{1..1617}	n383038|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fqw.2||0.4525720|-0.2631762	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n383038|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fqw.2||0.4525720|-0.2631762	chr16	 90244124	 90245740	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30"	NA	inter
CUST_19481_PI429285431	7.2362547	P	7.551338	P	0.803804578401985	0	lncRNA	21138-1_{1..151}	lnc-C7orf73-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C7orf73-1:1	chr7	135412198	135412348	+	lnc-C7orf73-1	lnc-C7orf73-1:1	ENSG00000223388.1	AC091736.11	SLC13A4	"hg19_refFlat_SLC13A4:range=chr7:135366311-1354122445'pad=0,hg19_refFlat_SLC13A4:range=chr7:135366311-1354122445'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90chr7:135402198-135412933"	NA	inner
CUST_41651_PI429285431	2.1069674	A	3.1824725	P	0.474504903123661	0	lncRNA	43065-1_{1..96}	ENST00000384987 ncrna:miRNA chromosome:GRCh37:1:155316141:155316236:-1 gene:ENSG00000207720 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384987 ncrna:miRNA chromosome:GRCh37:1:155316141:155316236:-1 gene:ENSG00000207720 gene_biotype:miRNA transcript_biotype:miRNA	chr1	155316141	155316236	-	ENSG00000207720	ENST00000384987	NA	NA	ASH1L	NA	chr1:155306141-155326236	inner
CUST_43846_PI429285431	0.90827906	A	0.8981096	A	1.00707383472863	0	lncRNA	48570-1_{1..3000}	"gi|299829290|ref|NR_033873.1| Homo sapiens uncharacterized LOC400955 (FLJ30838), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|299829290|ref|NR_033873.1| Homo sapiens uncharacterized LOC400955 (FLJ30838), non-coding RNA"	Chr2	 58747888	 58750887	+	400955	NR_033873.1	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.11;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40"	NA	inter
CUST_31992_PI429285431	1.4402313	A	1.2722827	A	1.12345987595407	0	lncRNA	33714-1_{1..3000}	n338551|AL832503|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|955|NULL|-1.1550800|-0.2598798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338551|AL832503|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|955|NULL|-1.1550800|-0.2598798	chr1	229024065	229027064	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31458_PI429285431	5.24773	P	3.6578848	P	3.01017048865751	0	lncRNA	33224-1_{1..3000}	n337930|AK057062|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|315|NULL|-0.9007340|-0.2956336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337930|AK057062|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|315|NULL|-0.9007340|-0.2956336	chr22	 18214960	 18217959	+	NA	NA	NA	NA	BID	NA	chr22:18216906-18227980	inner
CUST_51338_PI429285431	2.1429157	A	1.8824236	A	1.19788723155371	0	lncRNA	54938-1_{1..397}	hg19_lincRNAsTranscripts_TCONS_l2_00008707 range=chr15:69373555-69383489 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008707 range=chr15:69373555-69383489 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 69373555	 69373951	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45189_PI429285431	5.7085905	P	4.52014	P	2.27907831472855	0	lncRNA	49657-2_{3001..4062}	"gi|237858637|ref|NR_027668.1| Homo sapiens ring finger protein 170 (RNF170), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237858637|ref|NR_027668.1| Homo sapiens ring finger protein 170 (RNF170), transcript variant 5, non-coding RNA"	Chr8	 42711437	 42712498	-	81790	NR_027668.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90"	NA	inter
CUST_18836_PI429285431	3.5148408	P	3.4937682	P	1.01471360820674	0	lncRNA	20530-1_{1..776}	lnc-AC130352.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AC130352.1-1:1	chr8	 12268474	 12269249	+	lnc-AC130352.1-1	lnc-AC130352.1-1:1	ENSG00000227888	FAM66A	NA	NA	NA	inter
CUST_12555_PI429285431	0.90545154	A	0.91341394	A	0.99449608722464	0	lncRNA	14166-2_{3001..6000}	lnc-KLF6-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF6-7:2	chr10	  4288696	  4291695	-	lnc-KLF6-7	lnc-KLF6-7:2	XLOC_008700	linc-KLF6-2	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-94.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40"	NA	inter
CUST_12512_PI429285431	4.0589557	P	4.484351	P	0.744634672901547	0	lncRNA	14123-1_{1..1261}	lnc-LINC00346-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LINC00346-3:1	chr13	111465376	111466636	-	lnc-LINC00346-3	lnc-LINC00346-3:1	XLOC_010722	linc-CARS2-1	NA	NA	NA	inter
CUST_18318_PI429285431	1.3854407	A	0.9020446	A	1.3980307563342	0	lncRNA	20045-1_{1..568}	lnc-MYC-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYC-2:8	chr8	128902835	128903402	+	lnc-MYC-2	lnc-MYC-2:8	ENSG00000249859	PVT1	NA	NA	NA	inter
CUST_49234_PI429285431	0.8931862	A	0.88656944	A	1.00459692211589	0	lncRNA	53054-1_{1..1119}	hg19_lincRNAsTranscripts_TCONS_l2_00021493 range=chr4:190742214-190838759 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021493 range=chr4:190742214-190838759 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	190742214	190743332	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013050	5.3023124	P	5.954668	P	0.636240625723748	0	lncRNA	XR_110201	XR_110201	XR_110201	NA	Hs.550045	LOC100505903	uncharacterized LOC100505903	ENST00000429305	THC2675624	NA	"PREDICTED: Homo sapiens hypothetical LOC100505903 (LOC100505903), miscRNA [XR_110201]"	chr6:170478160-170478219	hs|6q27	Agilent_HUMAN_G3V2	XR_110201	XR_110201	chr6	170478160	170478219	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51695_PI429285431	3.4344523	P	2.604213	A	1.77798025167405	0	lncRNA	55256-1_{1..985}	hg19_lincRNAsTranscripts_TCONS_l2_00011028 range=chr17:81057233-81058397 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011028 range=chr17:81057233-81058397 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 81057233	 81058217	+	NA	NA	NA	NA	METRNL	NA	chr17:81047233-81052592	inter
CUST_13852_PI429285431	7.211958	P	7.445227	P	0.850705095145316	0	lncRNA	15495-1_{1..1847}	lnc-ANXA1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANXA1-1:3	chr9	 75983450	 75985296	+	lnc-ANXA1-1	lnc-ANXA1-1:3	XLOC_007401	linc-RORB-8	NA	NA	NA	inter
CUST_38585_PI429285431	1.5235568	A	2.4579961	A	0.523245788616624	0	lncRNA	39596-1_{1..1920}	n383634|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002rxj.1||-0.1105250|-0.3815540	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383634|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002rxj.1||-0.1105250|-0.3815540	chr2	 53990097	 53992016	-	NA	NA	NA	NA	CHAC2	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70chr2:53994929-54002017"	NA	inner
LNCA_21_P0006362	0.8764415	A	0.8801161	A	0.997456202321012	0	lncRNA	ENST00000444985	NA	AK093363	NA	Hs.147110	XLOC_007502	NA	ENST00000444985	THC2619600	NA	"BROAD Institute lincRNA (XLOC_007502), lincRNA [TCONS_00016663]"	chr9:109400474-109400533	hs|9q31.2	Agilent_HUMAN_G3V2	ENST00000444985	ENST00000444985	chr9	109400474	109400533	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12016_PI429285431	0.8742952	A	0.87706	A	0.998085421822716	0	lncRNA	13598-1_{1..327}	lnc-AL137145.1-2:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL137145.1-2:13	chr10	  6657725	  6658051	+	lnc-AL137145.1-2	lnc-AL137145.1-2:13	XLOC_008370	linc-ITIH2-10	NA	NA	NA	inter
CUST_34631_PI429285431	3.8573318	P	3.5444534	P	1.24218357782089	0	lncRNA	36084-1_{1..1881}	n341524|AK024518|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3994|NULL|-1.1870600|-0.3047601	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341524|AK024518|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3994|NULL|-1.1870600|-0.3047601	chr8	 68101556	 68103436	-	NA	NA	NA	NA	ARFGEF1	"hg19_refFlat_CSPP1:range=chr8:67976634-681078285'pad=0,hg19_refFlat_CSPP1:range=chr8:67976634-681078285'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10chr8:68109897-68113403"	NA	inner
CUST_24266_PI429285431	6.1045094	P	5.852171	P	1.1911362107078	0	lncRNA	25817-1_{1..538}	lnc-SSR3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-SSR3-4:1	chr3	155945478	155946015	-	lnc-SSR3-4	lnc-SSR3-4:1	ENSG00000240596.1	KCNAB1-AS2	KCNAB1	NA	chr3:155935478-155955672	inner
CUST_27967_PI429285431	2.0372198	A	1.2125862	A	1.77108518012514	0	lncRNA	29571-1_{1..471}	n325216|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329239|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329239|-0.9996520|-0.3343879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325216|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329239|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329239|-0.9996520|-0.3343879	chr2	104394090	104394560	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39024_PI429285431	5.9108176	P	3.9163032	P	3.98481956609056	0	lncRNA	40004-1_{1..806}	n385370|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xel.1||-1.2546200|-0.3463701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385370|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xel.1||-1.2546200|-0.3463701	chr8	 25272425	 25273230	+	NA	NA	NA	NA	DOCK5	NA	chr8:25262425-25270619	inter
LNCA_21_P0010762	1.5571748	A	0.9284255	A	1.54622396113651	0	lncRNA	AK126239	NA	AK126239	NA	NA	XLOC_l2_000941	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000941), lincRNA [TCONS_l2_00002524]"	chr1:65458664-65458605	hs|1p31.3	Agilent_HUMAN_G3V2	AK126239	AK126239	chr1	 65458605	 65458664	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14487_PI429285431	2.360542	A	0.9032009	A	2.746018033682	0	lncRNA	16153-1_{1..329}	lnc-ATXN3L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATXN3L-2:1	chrX	 13269202	 13269530	-	lnc-ATXN3L-2	lnc-ATXN3L-2:1	XLOC_008114	linc-FAM9C-1	NA	NA	NA	inter
CUST_7394_PI429285431	0.90026855	A	1.0570573	A	0.897019498226753	0	lncRNA	9039-1_{1..1992}	lnc-CDX2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CDX2-2:1	chr13	 28495301	 28497292	-	lnc-CDX2-2	lnc-CDX2-2:1	ENSG00000247381	RP11-438F9.2	PDX1	NA	chr13:28494168-28500451	inner
CUST_32461_PI429285431	0.8877394	A	1.0918214	A	0.868090885589319	0	lncRNA	34132-1_{1..1253}	n339063|M73799|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1492|NULL|-1.1951100|-0.2971220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339063|M73799|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1492|NULL|-1.1951100|-0.2971220	chr16	  7272052	  7273304	+	NA	NA	NA	NA	RBFOX1	NA	chr16:7262052-7283303	inner
CUST_14707_PI429285431	0.8883959	A	0.90166473	A	0.990844913251817	0	lncRNA	16371-1_{1..296}	lnc-RELN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RELN-1:1	chr7	103672594	103672889	-	lnc-RELN-1	lnc-RELN-1:1	XLOC_006551	linc-RELN	NA	NA	NA	inter
CUST_26981_PI429285431	0.8976532	A	0.9019786	A	0.997006351115117	0	lncRNA	28507-1_{1..672}	n324071|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052642|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052642|-1.0869900|-0.3800854	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324071|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052642|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052642|-1.0869900|-0.3800854	chr9	 74110164	 74110835	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008237	0.9007758	A	0.9208393	A	0.986189296568088	0	lncRNA	TCONS_00021819	NA	NA	NA	NA	XLOC_010419	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010419), lincRNA [TCONS_00021819]"	chr13:68610766-68610825	hs|13q21.33	Agilent_HUMAN_G3V2	TCONS_00021819	TCONS_00021819	chr13	 68610766	 68610825	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13211_PI429285431	1.2556009	A	0.898806	A	1.2805777957034	0	lncRNA	14839-1_{1..2319}	lnc-MYL10-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-MYL10-1:3	chr7	101212130	101214448	-	lnc-MYL10-1	lnc-MYL10-1:3	XLOC_006548	linc-RABL5	EMID2	"hg19_refFlat_OVCH1:range=chr12:29580504-296506195'pad=0,hg19_refFlat_OVCH1:range=chr12:29580504-296506195'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30chr7:101202130-101202304"	NA	inter
CUST_48732_PI429285431	0.8956009	A	1.1829822	A	0.819388017205547	0	lncRNA	52571-1_{1..804}	hg19_lincRNAsTranscripts_TCONS_l2_00014899 range=chr2:131183470-131185713 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014899 range=chr2:131183470-131185713 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	131183470	131184273	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30"	NA	inter
LNCA_21_P0008592	0.8977415	A	0.99268925	A	0.93630615696452	0	lncRNA	TCONS_00023309	NA	NA	NA	NA	XLOC_011178	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011178), lincRNA [TCONS_00023309]"	chr15:24608740-24610373	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023309	TCONS_00023309	chr15	 24608740	 24610373	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17126_PI429285431	1.0663984	A	1.2872361	A	0.858067055644357	0	lncRNA	18836-1_{1..306}	lnc-LRRC30-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC30-3:1	chr18	  6778921	  6779226	+	lnc-LRRC30-3	lnc-LRRC30-3:1	XLOC_012619	linc-ARHGAP28-1	NA	NA	NA	inter
LNCA_21_P0005124	2.1784115	A	2.4811285	A	0.810724136463682	0	lncRNA	TCONS_00012548	NA	NA	NA	NA	XLOC_005397	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005397), lincRNA [TCONS_00012548]"	chr6:98345512-98345571	hs|6q16.1	Agilent_HUMAN_G3V2	TCONS_00012548	TCONS_00012548	chr6	 98345512	 98345571	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007255	0.8899252	A	0.9053739	A	0.989348906071731	0	lncRNA	TCONS_00019433	NA	NA	NA	NA	XLOC_009247	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009247), lincRNA [TCONS_00019433]"	chr11:90900442-90900501	hs|11q14.3	Agilent_HUMAN_G3V2	TCONS_00019433	TCONS_00019433	chr11	 90900442	 90900501	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26745_PI429285431	5.8501043	P	6.042712	P	0.875022670157136	0	lncRNA	28238-1_{1..543}	n323788|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060943|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060943|-0.8979300|-0.1824098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323788|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060943|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060943|-0.8979300|-0.1824098	chrX	152088865	152089407	-	NA	NA	NA	NA	ZNF185	"hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF185:range=chrX:152083034-1521390855'pad=0,hg19_refFlat_ZNF185:range=chrX:152083034-1521390855'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90chrX:152082986-152102931"	NA	inner
CUST_241_PI429201921	1.663679	A	1.5134113	A	1.10977537788917	0	lncRNA	184-2_{3001..6000}	TC01004224.hg.1	 TCONS_l2_00001997-XLOC_l2_000092 // Broad TUCP // linc-UBXN10 chr1:+:20484184-20487059 // chr1 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00001996-XLOC_l2_000092 // Broad TUCP // linc-UBXN10 chr1:+:20480830-20487061 // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00000146-XLOC_l2_000092 // Broad TUCP // linc-UBXN10 chr1:+:20485534-20486914 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:20480830-20487061	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00001996-XLOC_l2_000092	linc-UBXN10	chr1	 20480830	 20487061	+	NA	NA	NA	NA	TAF12	NA	chr1:28962603-28969604	Unknown
CUST_33259_PI429285431	6.5859895	P	5.237618	P	2.5462454549822	0	lncRNA	34845-1_{1..1449}	n339967|BC014384|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2420|NULL|-1.2777800|-0.4982155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339967|BC014384|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2420|NULL|-1.2777800|-0.4982155	chr4	 41961158	 41962606	+	NA	NA	NA	NA	TMEM33	NA	chr4:41951158-41962824	inner
CUST_41252_PI429285431	7.3380094	P	7.7754054	P	0.738466305098127	0	lncRNA	42204-1_{1..76}	ENST00000582688 ncrna:miRNA chromosome:GRCh37:22:42319226:42319301:-1 gene:ENSG00000263463 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582688 ncrna:miRNA chromosome:GRCh37:22:42319226:42319301:-1 gene:ENSG00000263463 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 42319226	 42319301	-	ENSG00000263463	ENST00000582688	NA	NA	TNFRSF13C	NA	chr22:42321036-42322821	inter
LNCA_21_P0006090	0.8845412	A	1.6320714	A	0.595622351893028	0	lncRNA	ENST00000423380	XR_108974	XR_108974	NA	NA	XLOC_007775	NA	ENST00000423380	THC2635199	NA	"PREDICTED: Homo sapiens hypothetical LOC100507103 (LOC100507103), miscRNA [XR_108974]"	chr9:93867301-93867242	hs|9q22.2	Agilent_HUMAN_G3V2	ENST00000423380	ENST00000423380	chr9	 93867242	 93867301	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12802_PI429285431	0.87960964	A	1.2373621	A	0.78037936746897	0	lncRNA	14429-1_{1..1817}	lnc-C10orf90-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf90-2:1	chr10	128593129	128594945	-	lnc-C10orf90-2	lnc-C10orf90-2:1	XLOC_008986	linc-C10orf90-2	LOC728065	NA	chr10:128583129-128585313	inter
LNCA_19_P00316423	10.066663	P	10.350853	P	0.821202542926952	0	lncRNA	XR_132560	XR_132560	XR_132560	NA	NA	LOC646808	"L antigen family, member 3 pseudogene"	NA	NA	NA	"PREDICTED: Homo sapiens L antigen family member 3-like (LOC646808), miscRNA [XR_132560]"	chr9:33019659-33019600	hs|9p21.1	Agilent_HUMAN_G3V2	XR_132560	XR_132560	chr9	 33019600	 33019659	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30606_PI429285431	0.8777413	A	1.4239208	A	0.684831278029781	0	lncRNA	32388-1_{1..425}	n335922|X65913|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322798|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322798|2.4828400|-0.0970262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335922|X65913|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322798|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322798|2.4828400|-0.0970262	chr14	106330798	106331222	-	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106859077	inter
LNCA_21_P0007723	0.8791353	A	0.887797	A	0.994014154056129	0	lncRNA	TCONS_00020839	NA	NA	NA	NA	XLOC_010126	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010126), lincRNA [TCONS_00020839]"	chr12:72102075-72101824	hs|12q21.1	Agilent_HUMAN_G3V2	TCONS_00020839	TCONS_00020839	chr12	 72101824	 72102075	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005672	0.8788148	A	1.7141665	A	0.560446396813563	0	lncRNA	TCONS_00014649	NA	NA	NA	NA	XLOC_006739	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006739), lincRNA [TCONS_00014649]"	chr8:22537169-22537228	hs|8p21.3	Agilent_HUMAN_G3V2	TCONS_00014649	TCONS_00014649	chr8	 22537169	 22537228	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20477_PI429285431	1.9232634	A	2.5411074	A	0.651644033767233	0	lncRNA	22120-1_{1..566}	lnc-RGS5-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RGS5-1:7	chr1	163291412	163291977	-	lnc-RGS5-1	lnc-RGS5-1:7	ENSG00000232995.2	RP11-267N12.3	NUF2	NA	chr1:163291723-163301542	inner
CUST_47068_PI429285431	4.207814	P	4.184421	P	1.01634696515498	0	lncRNA	51154-2_{3001..3350}	"gi|223555976|ref|NR_026828.1| Homo sapiens long intergenic non-protein coding RNA 661 (LINC00661), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223555976|ref|NR_026828.1| Homo sapiens long intergenic non-protein coding RNA 661 (LINC00661), non-coding RNA"	Chr19	 16129444	 16129793	+	126536	NR_026828.1	NA	NA	NA	NA	NA	inter
CUST_1606_PI429285431	4.7422566	P	4.769397	P	0.981363555001068	0	lncRNA	1592-1_{1..696}	"transcript_id ""ENST00000449845.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449845.1"" | genecode_v17"	chr3	187824884	187825579	+	ENSG00000234238.1	ENST00000449845.1	RP11-430L16.1	RP11-430L16.1-001	LPP	NA	chr3:187871663-187874808	inter
CUST_50218_PI429285431	1.9056814	A	1.5115838	A	1.31412052592658	0	lncRNA	53942-1_{1..1389}	hg19_lincRNAsTranscripts_TCONS_l2_00028763 range=chr9:67030150-67046861 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028763 range=chr9:67030150-67046861 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 67030150	 67031538	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26936_PI429285431	0.8779752	A	0.8769244	A	1.0007286243752	0	lncRNA	28455-1_{1..439}	n324014|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053389|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053389|0.1750110|-0.1860071	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324014|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053389|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053389|0.1750110|-0.1860071	chr9	100985475	100985913	+	NA	NA	NA	NA	TBC1D2	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80chr9:100975475-100996994"	NA	inner
CUST_39612_PI429285431	6.3774233	P	6.327456	P	1.03524145888281	0	lncRNA	40552-1_{1..1914}	n387668|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kxp.1||2.6667200|-0.1820830	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n387668|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kxp.1||2.6667200|-0.1820830	chr8	 11973290	 11975203	+	NA	NA	NA	NA	LOC100127885	NA	chr8:12295164-12334631	inter
CUST_32318_PI429285431	0.8926718	A	0.90461963	A	0.991752593339776	0	lncRNA	34001-1_{1..1843}	n338896|BC021164|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1322|NULL|-1.1720700|-0.2591663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n338896|BC021164|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1322|NULL|-1.1720700|-0.2591663	chr2	 86200669	 86202511	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004511	0.87479776	A	0.8766645	A	0.998706911192908	0	lncRNA	TCONS_00010715	NA	NA	NA	NA	XLOC_004429	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004429), lincRNA [TCONS_00010715]"	chr5:73636381-73636440	hs|5q13.3	Agilent_HUMAN_G3V2	TCONS_00010715	TCONS_00010715	chr5	 73636381	 73636440	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011402	7.401174	P	7.6620493	P	0.834581415460941	0	lncRNA	AK310041	NA	AK310041	NA	Hs.672754	LOC643699	golgin subfamily A member 8-like	NA	THC2541117	GO:0005794|GO:0016020|GO:0032580	"BROAD Institute lincRNA (XLOC_l2_004611), lincRNA [TCONS_l2_00009426]"	chr15:32889624-32889683	hs|15q13.3	Agilent_HUMAN_G3V2	AK310041	AK310041	chr15	 32889624	 32889683	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00317963	2.209565	A	0.87653404	A	2.51931402338226	0	lncRNA	TCONS_00011571	NA	NA	NA	NA	XLOC_005849	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005849), lincRNA [TCONS_00011571]"	chr6:138146971-138146912	hs|6q23.3	Agilent_HUMAN_G3V2	TCONS_00011571	TCONS_00011571	chr6	138146912	138146971	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12596_PI429285431	0.88549834	A	0.9012006	A	0.989175038928646	0	lncRNA	14209-1_{1..2884}	lnc-TNFRSF9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFRSF9-1:1	chr1	  8066476	  8069359	-	lnc-TNFRSF9-1	lnc-TNFRSF9-1:1	XLOC_000695	linc-TNFRSF9	ERRFI1	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr1:8071779-8077529"	NA	inter
CUST_48357_PI429285431	0.900618	A	1.251158	A	0.78429048343215	0	lncRNA	52213-1_{1..997}	hg19_lincRNAsTranscripts_TCONS_l2_00000359 range=chr1:83911672-83928345 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000359 range=chr1:83911672-83928345 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 83911672	 83912668	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15697_PI429285431	2.019344	A	2.0332966	A	0.990375410357262	0	lncRNA	17384-1_{1..533}	lnc-NAV3-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAV3-2:3	chr12	 78876565	 78877097	+	lnc-NAV3-2	lnc-NAV3-2:3	XLOC_009814	linc-SYT1-2	NA	NA	NA	inter
CUST_35741_PI429285431	0.8978315	A	0.8979235	A	0.999936232492622	0	lncRNA	37158-2_{3001..4206}	n342911|BX648825|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5419|NULL|-0.9353100|-0.2013609	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342911|BX648825|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5419|NULL|-0.9353100|-0.2013609	chr12	131966388	131967593	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013212	0.8768259	A	0.87773234	A	0.999371901006462	0	lncRNA	TCONS_l2_00025928	NA	NA	NA	NA	XLOC_l2_013439	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013439), lincRNA [TCONS_l2_00025928]"	chr7:63478110-63478169	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025928	TCONS_l2_00025928	chr7	 63478110	 63478169	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29942_PI429285431	0.8986168	A	0.8895397	A	1.00631160101077	0	lncRNA	31706-1_{1..256}	n334132|M63579|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196076|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196076|-1.4077800|-0.5058585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334132|M63579|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196076|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196076|-1.4077800|-0.5058585	chr5	 82937050	 82937305	-	NA	NA	NA	NA	HAPLN1	NA	chr5:82934017-82947306	inner
CUST_8888_PI429285431	2.933891	A	3.2591858	P	0.798135278898199	0	lncRNA	10425-1_{1..665}	lnc-NSG1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NSG1.1-1:1	chr4	  4546465	  4547129	+	lnc-NSG1.1-1	lnc-NSG1.1-1:1	ENSG00000247708	RP11-323F5.2	STX18	NA	chr4:4536465-4543775	inter
CUST_7339_PI429285431	0.87567586	A	0.87789994	A	0.998459572896335	0	lncRNA	8854-1_{1..244}	"transcript_id ""ENST00000517154.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517154.1"" | genecode_v17"	chr21	 21728965	 21729208	+	ENSG00000252963.1	ENST00000517154.1	RN7SKP147	RN7SKP147-201	NA	NA	NA	inter
CUST_13349_PI429285431	0.92313397	A	0.89122033	A	1.02236732967506	0	lncRNA	14986-1_{1..958}	lnc-GPR123-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR123-4:1	chr10	134760713	134761670	+	lnc-GPR123-4	lnc-GPR123-4:1	XLOC_008676	linc-GPR123-4	C10orf93	NA	chr10:134750713-134756089	inter
CUST_9459_PI429285431	2.248981	A	1.4465526	A	1.74403428314678	0	lncRNA	10964-1_{1..282}	lnc-ZSCAN2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZSCAN2-2:1	chr15	 85077411	 85077692	+	lnc-ZSCAN2-2	lnc-ZSCAN2-2:1	XLOC_011339	linc-ZSCAN2-2	NA	"hg19_refFlat_UBE2Q2:range=chr15:76136695-761917995'pad=0,hg19_refFlat_UBE2Q2:range=chr15:76136695-761917995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_UBE2Q2:range=chr15:76136008-761917995'pad=0,hg19_refFlat_UBE2Q2:range=chr15:76136008-761917995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90"	NA	inter
CUST_8654_PI429285431	5.07381	P	5.295354	P	0.857647074694916	0	lncRNA	10206-1_{1..563}	lnc-MARCKS-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MARCKS-5:4	chr6	114316764	114317326	+	lnc-MARCKS-5	lnc-MARCKS-5:4	ENSG00000228624	RP3-399L15.3	NA	NA	NA	inter
CUST_47779_PI429285431	1.402846	A	1.066921	A	1.26218641433494	0	lncRNA	51706-1_{1..3000}	"gi|385137094|ref|NR_047632.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 62, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137094|ref|NR_047632.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 62, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047632.1	NA	NA	NA	NA	NA	inter
CUST_37735_PI429285431	7.3694944	P	8.009829	P	0.641564135450052	0	lncRNA	38828-1_{1..311}	n346236|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1786|NULL|-1.6065700|-0.2189516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346236|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1786|NULL|-1.6065700|-0.2189516	chr5	177305797	177306107	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16470_PI429285431	0.8753504	A	0.8821808	A	0.995276717446374	0	lncRNA	18168-1_{1..306}	lnc-DIAPH3-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DIAPH3-6:1	chr13	 57711805	 57712110	-	lnc-DIAPH3-6	lnc-DIAPH3-6:1	XLOC_010629	linc-PCDH8-10	PRR20B	NA	chr13:57721622-57721858	inter
CUST_34262_PI429285431	5.3287325	P	5.353626	P	0.982893153211529	0	lncRNA	35763-1_{1..1641}	n341120|AK025214|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3586|NULL|-0.2115120|-0.3155981	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341120|AK025214|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3586|NULL|-0.2115120|-0.3155981	chr11	111653037	111654677	+	NA	NA	NA	NA	ALG9	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-25.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30chr11:111652919-111664663"	NA	inner
CUST_6074_PI429285431	1.1563667	A	1.3194132	A	0.893137064880949	0	lncRNA	5998-1_{1..2343}	"transcript_id ""ENST00000580197.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580197.1"" | genecode_v17"	chr18	  6925477	  6927819	-	ENSG00000265933.1	ENST00000580197.1	LINC00668	LINC00668-003	LAMA1	NA	chr18:6926973-6938571	inter
CUST_19631_PI429285431	0.8914496	A	1.5318344	A	0.641541811980181	0	lncRNA	21287-1_{1..387}	lnc-TM2D2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TM2D2-3:1	chr8	 38703676	 38704062	-	lnc-TM2D2-3	lnc-TM2D2-3:1	ENSG00000253829.1	RP11-723D22.3	TACC1	NA	chr8:38693676-38710546	inner
CUST_1282_PI429285431	0.9020517	A	1.5852921	A	0.622764926210519	0	lncRNA	1273-1_{1..586}	"transcript_id ""ENST00000442809.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442809.1"" | genecode_v17"	chr3	   577936	   578521	+	ENSG00000224957.1	ENST00000442809.1	AC090044.1	AC090044.1-002	NA	NA	NA	inter
CUST_34009_PI429285431	4.240919	P	2.7350755	A	2.83990663430933	0	lncRNA	35546-1_{1..1410}	n340825|BC036859|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3289|NULL|-0.9055270|-0.2547836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n340825|BC036859|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3289|NULL|-0.9055270|-0.2547836	chr6	  5892677	  5894086	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51712_PI429285431	7.7307525	P	7.568654	P	1.11891349224352	0	lncRNA	55269-1_{1..1226}	hg19_lincRNAsTranscripts_TCONS_l2_00011965 range=chr18:11619400-11623103 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011965 range=chr18:11619400-11623103 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 11619400	 11620625	-	NA	NA	NA	NA	AMAC1L1	NA	chr18:11609595-11610611	inter
CUST_39258_PI429285431	14.68034	P	15.25839	P	0.669868584935565	0	lncRNA	40229-1_{1..950}	n386143|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010box.2||-1.0350500|-0.2978511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386143|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010box.2||-1.0350500|-0.2978511	chr15	100348034	100348983	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39189_PI429285431	0.91348696	A	0.9300307	A	0.988598251536263	0	lncRNA	40164-1_{1..1234}	n385943|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009wcy.1||4.1887200|-0.2218825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385943|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009wcy.1||4.1887200|-0.2218825	chr1	 89873237	 89874470	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010028	0.9041836	A	0.9265727	A	0.984600856718321	0	lncRNA	TCONS_00028353	NA	NA	NA	NA	XLOC_013706	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013706), lincRNA [TCONS_00028353]"	chr20:25225911-25225852	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028353	TCONS_00028353	chr20	 25225852	 25225911	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010567	0.9038563	A	0.92600584	A	0.984764363598751	0	lncRNA	TCONS_l2_00000700	NA	NA	NA	NA	XLOC_l2_000514	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000514), lincRNA [TCONS_l2_00000700]"	chr1:177326186-177332613	hs|1q25.2	Agilent_HUMAN_G3V2	TCONS_l2_00000700	TCONS_l2_00000700	chr1	177326186	177332613	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13077_PI429285431	4.008497	P	4.2184157	P	0.86458595183118	0	lncRNA	14704-1_{1..419}	lnc-PTPRG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPRG-1:1	chr3	 61298883	 61299301	+	lnc-PTPRG-1	lnc-PTPRG-1:1	XLOC_002680	linc-PTPRG-1	NA	NA	NA	inter
CUST_46102_PI429285431	0.9102144	A	1.3779722	A	0.723087529196874	0	lncRNA	50365-2_{3001..3175}	"gi|223555999|ref|NR_026836.1| Homo sapiens TRHDE antisense RNA 1 (TRHDE-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223555999|ref|NR_026836.1| Homo sapiens TRHDE antisense RNA 1 (TRHDE-AS1), transcript variant 2, non-coding RNA"	Chr12	 72659327	 72659501	-	283392	NR_026836.1	NA	NA	NA	"hg19_refFlat_TRHDE:range=chr12:72666559-730569755'pad=0,hg19_refFlat_TRHDE:range=chr12:72666559-730569755'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.20"	NA	inter
CUST_38472_PI429285431	4.4096694	P	4.0823336	P	1.25469421168428	0	lncRNA	39491-1_{1..571}	n382957|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dsq.1||0.2081060|-0.2189581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382957|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002dsq.1||0.2081060|-0.2189581	chr16	 29460665	 29461235	+	NA	NA	NA	NA	SULT1A4	NA	chr16:29471207-29471236	inter
CUST_49274_PI429285431	1.1281936	A	0.90131354	A	1.17030134317244	0	lncRNA	53093-1_{1..1667}	hg19_lincRNAsTranscripts_TCONS_l2_00023270 range=chr5:175602547-175665324 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023270 range=chr5:175602547-175665324 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175602547	175604213	-	NA	NA	NA	NA	C5orf25	NA	chr5:175665370-175675324	inter
CUST_21736_PI429285431	5.2402625	P	5.1130133	P	1.09220918923342	0	lncRNA	23346-1_{1..498}	lnc-EDC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EDC3-1:1	chr15	 74907758	 74908255	-	lnc-EDC3-1	lnc-EDC3-1:1	ENSG00000260919.1	CTD-3154N5.1	CLK3	"hg19_refFlat_CLK3:range=chr15:74907796-749222245'pad=0,hg19_refFlat_CLK3:range=chr15:74907796-749222245'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.20chr15:74900713-74917937"	NA	inner
CUST_19970_PI429285431	2.0825586	A	2.0411255	A	1.02913561013833	0	lncRNA	21624-1_{1..3000}	lnc-FTSJD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-FTSJD2-1:1	chr6	 37508803	 37511802	+	lnc-FTSJD2-1	lnc-FTSJD2-1:1	ENSG00000204110.5	RP1-153P14.8	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-60.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
CUST_51871_PI429285431	0.88251364	A	0.8932078	A	0.992614778907936	0	lncRNA	55423-1_{1..690}	hg19_lincRNAsTranscripts_TCONS_l2_00012658 range=chr19:52207166-52208547 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012658 range=chr19:52207166-52208547 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 52207166	 52207855	+	NA	NA	NA	NA	HAS1	NA	chr19:52216365-52218547	inter
LNCA_21_P0005967	0.88739806	A	0.901693	A	0.990140430070225	0	lncRNA	ENST00000506428	XR_108912	XR_108912	NA	Hs.720321	XLOC_007093	NA	ENST00000506428	THC2518039	NA	"PREDICTED: Homo sapiens hypothetical LOC100505532 (LOC100505532), miscRNA [XR_108912]"	chr8:61317132-61317073	hs|8q12.1	Agilent_HUMAN_G3V2	ENST00000506428	ENST00000506428	chr8	 61317073	 61317132	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46240_PI429285431	5.7087164	P	4.3240666	P	2.61108568193454	0	lncRNA	50479-1_{1..2664}	"gi|226423864|ref|NR_027466.1| Homo sapiens CTAGE family, member 11, pseudogene (CTAGE11P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226423864|ref|NR_027466.1| Homo sapiens CTAGE family, member 11, pseudogene (CTAGE11P), non-coding RNA"	Chr13	 75811889	 75814552	-	647288	NR_027466.1	NA	NA	NA	NA	NA	inter
LNCA_19_P00317481	3.375503	P	3.1190858	P	1.1945085663198	0	lncRNA	XR_109752	XR_109752	XR_109752	NA	Hs.667879	LOC100507580	NA	NA	THC2491876	NA	"PREDICTED: Homo sapiens hypothetical LOC100507580 (LOC100507580), miscRNA [XR_109752]"	chr22:25875326-25875385	hs|22q11.23	Agilent_HUMAN_G3V2	XR_109752	XR_109752	chr22	 25875326	 25875385	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011741	3.0725682	P	2.83236	A	1.1811631066089	0	lncRNA	TCONS_l2_00013067	NA	NA	NA	NA	XLOC_l2_007033	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007033), lincRNA [TCONS_l2_00013067]"	chr19:36806879-36801802	hs|19q13.12	Agilent_HUMAN_G3V2	TCONS_l2_00013067	TCONS_l2_00013067	chr19	 36801802	 36806879	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36309_PI429285431	2.317198	A	1.9856097	A	1.25839801486265	0	lncRNA	37540-1_{1..623}	n344835|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_384|NULL|-1.3577100|-0.5995992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344835|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_384|NULL|-1.3577100|-0.5995992	chr5	 93447457	 93448079	+	NA	NA	NA	NA	FAM172A	NA	chr5:93437457-93447404	inter
CUST_47993_PI429285431	6.703514	P	6.8301587	P	0.915959236681295	0	lncRNA	51881-1_{1..3000}	"gi|410173208|ref|XR_172152.1| PREDICTED: Homo sapiens polycystic kidney disease 1 (autosomal dominant) pseudogene 1 (PKD1P1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173208|ref|XR_172152.1| PREDICTED: Homo sapiens polycystic kidney disease 1 (autosomal dominant) pseudogene 1 (PKD1P1), misc_RNA"	NA	NA	NA	NA	NA	XR_172152.1	NA	NA	NA	"hg19_refFlat_PLA2G10:range=chr16:14766464-147880865'pad=0,hg19_refFlat_PLA2G10:range=chr16:14766464-147880865'pad=0 3'pad=0 strand=- repeatMasking=none,-96.70"	NA	Unknown
CUST_12175_PI429285431	0.88948154	A	0.8974916	A	0.994463234196604	0	lncRNA	13775-1_{1..419}	lnc-CLMP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLMP-1:2	chr11	123077866	123078284	-	lnc-CLMP-1	lnc-CLMP-1:2	XLOC_009584	linc-ASAM-1	NA	NA	NA	inter
LNCA_21_P0002909	0.87927276	A	0.88809055	A	0.993906614159057	0	lncRNA	ENST00000421034	NA	NA	NA	NA	XLOC_003331	NA	ENST00000421034	NA	NA	"BROAD Institute lincRNA (XLOC_003331), lincRNA [TCONS_00005887]"	chr3:176347736-176344089	hs|3q26.32	Agilent_HUMAN_G3V2	ENST00000421034	ENST00000421034	chr3	176344089	176347736	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009151	2.5314543	A	2.2634008	A	1.20418203553642	0	lncRNA	TCONS_00025132	NA	NA	NA	NA	XLOC_012339	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012339), lincRNA [TCONS_00025132]"	chr17:79605092-79605151	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_00025132	TCONS_00025132	chr17	 79605092	 79605151	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25478_PI429285431	0.906321	A	0.91692686	A	0.992675533651515	0	lncRNA	27008-1_{1..563}	lnc-SLC47A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC47A2-1:1	chr17	 19552686	 19553248	-	lnc-SLC47A2-1	lnc-SLC47A2-1:1	ENSG00000264932.1	CTD-2104P17.2	ALDH3A2	NA	chr17:19542686-19563248	inner
CUST_16384_PI429285431	0.8967108	A	0.9089794	A	0.991532110765883	0	lncRNA	18082-1_{1..211}	lnc-GPM6A-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPM6A-4:1	chr4	176159346	176159556	-	lnc-GPM6A-4	lnc-GPM6A-4:1	XLOC_004175	linc-GLRA3-3	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60"	NA	inter
CUST_47685_PI429285431	1.5988593	A	1.4364595	A	1.11914719640966	0	lncRNA	51662-3_{6001..6491}	"gi|385137064|ref|NR_047602.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 32, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137064|ref|NR_047602.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 32, non-coding RNA"	ChrY	 15366259	 15366749	-	7404	NR_047602.1	NA	NA	NA	NA	NA	inter
CUST_19293_PI429285431	0.88575184	A	0.8857455	A	1.00000439456278	0	lncRNA	20960-1_{1..2576}	lnc-BCL9L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BCL9L-1:1	chr11	118821578	118824153	-	lnc-BCL9L-1	lnc-BCL9L-1:1	ENSG00000264523.1	RP11-158I9.7	UPK2	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-18.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr11:118827008-118829269"	NA	inter
LNCA_21_P0007472	2.8648849	A	2.254474	A	1.52669397113055	0	lncRNA	TCONS_00020151	NA	NA	NA	NA	XLOC_009594	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009594), lincRNA [TCONS_00020151]"	chr11:125794302-125794243	hs|11q24.2	Agilent_HUMAN_G3V2	TCONS_00020151	TCONS_00020151	chr11	125794243	125794302	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41784_PI429285431	5.16295	P	5.0226216	P	1.10215597057464	0	lncRNA	43359-1_{1..96}	ENST00000385196 ncrna:miRNA chromosome:GRCh37:4:115577915:115578010:1 gene:ENSG00000207931 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385196 ncrna:miRNA chromosome:GRCh37:4:115577915:115578010:1 gene:ENSG00000207931 gene_biotype:miRNA transcript_biotype:miRNA	chr4	115577915	115578010	+	ENSG00000207931	ENST00000385196	NA	NA	UGT8	NA	chr4:115567915-115588010	inner
CUST_20813_PI429285431	0.8816389	A	0.91080886	A	0.979983959282023	0	lncRNA	22444-1_{1..823}	lnc-NAPG-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NAPG-3:1	chr18	 10709183	 10710005	+	lnc-NAPG-3	lnc-NAPG-3:1	ENSG00000264843.1	RP11-856M7.2	FAM38B	"hg19_refFlat_PIEZO2:range=chr18:10671524-111485875'pad=0,hg19_refFlat_PIEZO2:range=chr18:10671524-111485875'pad=0 3'pad=0 strand=- repeatMasking=none,-103.40chr18:10699183-10719597"	NA	inner
CUST_21018_PI429285431	1.4033277	A	1.4060299	A	0.998128730700333	0	lncRNA	22646-2_{3001..3781}	lnc-CDK5-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK5-2:4	chr7	150723961	150724741	-	lnc-CDK5-2	lnc-CDK5-2:4	ENSG00000181652.11	ATG9B	ABCB8	"hg19_refFlat_NOS3:range=chr7:150690892-1507112575'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507112575'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.60chr7:150725510-150731586"	NA	inter
CUST_29017_PI429285431	1.0751414	A	1.0870694	A	0.991766225180552	0	lncRNA	30743-1_{1..474}	n326503|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029906|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029906|-1.1973100|-0.4552826	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326503|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029906|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029906|-1.1973100|-0.4552826	chr1	101561980	101562453	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012436	8.250512	P	7.7985544	P	1.36789510164009	0	lncRNA	TCONS_l2_00019209	NA	NA	NA	NA	XLOC_l2_010139	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010139), lincRNA [TCONS_l2_00019209]"	chr3:27674957-27674898	hs|3p24.1	Agilent_HUMAN_G3V2	TCONS_l2_00019209	TCONS_l2_00019209	chr3	 27674898	 27674957	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013231	4.197341	P	4.384059	P	0.878602189632662	0	lncRNA	AK126699	NA	AK126699	NA	Hs.676517	INTS4L2	integrator complex subunit 4-like 2	NA	NA	GO:0005488	"BROAD Institute lincRNA (XLOC_l2_013459), lincRNA [TCONS_l2_00025971]"	chr7:65183490-65183549	hs|7q11.21	Agilent_HUMAN_G3V2	AK126699	AK126699	chr7	 65183490	 65183549	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42356_PI429285431	3.9653754	P	4.3512583	P	0.765310500757141	0	lncRNA	45025-1_{1..132}	ENST00000384356 ncrna:snoRNA chromosome:GRCh37:3:160414717:160414848:1 gene:ENSG00000207084 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384356 ncrna:snoRNA chromosome:GRCh37:3:160414717:160414848:1 gene:ENSG00000207084 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	160414717	160414848	+	ENSG00000207084	ENST00000384356	NA	NA	NA	NA	NA	inter
CUST_49025_PI429285431	1.2436363	A	0.877113	A	1.28924218466186	0	lncRNA	52854-1_{1..448}	hg19_lincRNAsTranscripts_TCONS_l2_00020482 range=chr4:37075862-37112616 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020482 range=chr4:37075862-37112616 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 37075862	 37076309	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009131	5.179692	P	5.787464	P	0.656209324820398	0	lncRNA	TCONS_00025039	NA	NA	NA	NA	XLOC_011989	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011989), lincRNA [TCONS_00025039]"	chr16:66934146-66934087	hs|16q22.1	Agilent_HUMAN_G3V2	TCONS_00025039	TCONS_00025039	chr16	 66934087	 66934146	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013143	3.1327622	P	4.0010877	P	0.547782278967515	0	lncRNA	ENST00000436672	NA	NA	NA	NA	XLOC_l2_013040	NA	ENST00000436672	THC2701298	NA	"BROAD Institute lincRNA (XLOC_l2_013040), lincRNA [TCONS_l2_00025422]"	chr6:75303976-75303917	hs|6q13	Agilent_HUMAN_G3V2	ENST00000436672	ENST00000436672	chr6	 75303917	 75303976	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37106_PI429285431	0.8759812	A	0.88559926	A	0.993355442178849	0	lncRNA	38231-1_{1..291}	n345549|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1098|NULL|-1.3038200|-0.4257256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345549|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1098|NULL|-1.3038200|-0.4257256	chr2	168153620	168153910	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12936_PI429285431	0.8999124	A	0.8935502	A	1.00441967909149	0	lncRNA	14564-1_{1..337}	lnc-PPAP2B-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPAP2B-2:3	chr1	 56714702	 56715038	-	lnc-PPAP2B-2	lnc-PPAP2B-2:3	XLOC_000844	linc-USP24-1	NA	NA	NA	inter
CUST_42669_PI429285431	0.89164865	A	0.8973994	A	0.9960218178669	0	lncRNA	45579-1_{1..72}	ENST00000516625 ncrna:snoRNA chromosome:GRCh37:20:39045515:39045586:1 gene:ENSG00000252434 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516625 ncrna:snoRNA chromosome:GRCh37:20:39045515:39045586:1 gene:ENSG00000252434 gene_biotype:snoRNA transcript_biotype:snoRNA	chr20	 39045515	 39045586	+	ENSG00000252434	ENST00000516625	NA	NA	NA	NA	NA	inter
CUST_281_PI429285431	3.6630297	P	3.5768201	P	1.06157742758922	0	lncRNA	272-2_{3001..3871}	"transcript_id ""ENST00000440762.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440762.1"" | genecode_v17"	chr1	 73774853	 73775723	+	ENSG00000233973.1	ENST00000440762.1	RP4-598G3.1	RP4-598G3.1-001	NA	"hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70"	NA	inter
CUST_1742_PI429285431	0.9028384	A	0.9244574	A	0.985126569711048	0	lncRNA	1728-1_{1..367}	"transcript_id ""ENST00000506010.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506010.1"" | genecode_v17"	chr4	 38288615	 38288981	+	ENSG00000251642.1	ENST00000506010.1	RP11-600L4.1	RP11-600L4.1-001	NA	NA	NA	inter
CUST_296_PI429285431	1.2288982	A	1.123284	A	1.07595235923673	0	lncRNA	288-1_{1..473}	"transcript_id ""ENST00000443565.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443565.1"" | genecode_v17"	chr1	 81106969	 81107441	+	ENSG00000234184.1	ENST00000443565.1	RP5-887A10.1	RP5-887A10.1-001	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30"	NA	inter
CUST_7486_PI429285431	1.4369836	A	0.8782412	A	1.4729846539812	0	lncRNA	9126-1_{1..853}	lnc-TRAT1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRAT1-4:1	chr3	109101330	109102182	+	lnc-TRAT1-4	lnc-TRAT1-4:1	ENSG00000249508	AC124945.1	NA	NA	NA	inter
CUST_48829_PI429285431	0.8897554	A	0.9024485	A	0.991240404305848	0	lncRNA	52667-1_{1..232}	hg19_lincRNAsTranscripts_TCONS_l2_00018431 range=chr3:6165675-6400633 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018431 range=chr3:6165675-6400633 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	  6165675	  6165906	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33266_PI429285431	1.4262741	A	2.3017025	A	0.545091980367801	0	lncRNA	34852-1_{1..2642}	n339974|BC042992|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2427|NULL|-0.0793919|-0.3781180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339974|BC042992|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2427|NULL|-0.0793919|-0.3781180	chr4	 44019078	 44021719	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70"	NA	inter
LNCA_21_P0001530	5.073636	P	5.2286067	P	0.898150613430274	0	lncRNA	TCONS_00001555	NA	NA	NA	NA	XLOC_000897	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000897), lincRNA [TCONS_00001555]"	chr1:86967193-86967134	hs|1p22.3	Agilent_HUMAN_G3V2	TCONS_00001555	TCONS_00001555	chr1	 86967134	 86967193	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50277_PI429285431	2.0298648	A	1.9592446	A	1.05016804321419	0	lncRNA	54000-1_{1..562}	hg19_lincRNAsTranscripts_TCONS_l2_00028818 range=chr9:70654323-70662639 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028818 range=chr9:70654323-70662639 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 70654323	 70654884	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011488	3.670681	P	3.0271778	P	1.56211774384858	0	lncRNA	TCONS_l2_00010285	NA	NA	NA	NA	XLOC_l2_005553	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005553), lincRNA [TCONS_l2_00010285]"	chr16:75535742-75535683	hs|16q23.1	Agilent_HUMAN_G3V2	TCONS_l2_00010285	TCONS_l2_00010285	chr16	 75535683	 75535742	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2692_PI429285431	0.87980384	A	0.8792282	A	1.0003990828554	0	lncRNA	2678-1_{1..1190}	"transcript_id ""ENST00000454317.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454317.1"" | genecode_v17"	chr6	161236582	161237771	-	ENSG00000223627.1	ENST00000454317.1	RP1-54A3.1	RP1-54A3.1-001	NA	NA	NA	inter
CUST_21982_PI429285431	1.4757133	A	0.9850948	A	1.40504710653355	0	lncRNA	23590-1_{1..805}	lnc-AGGF1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGGF1-3:1	chr5	 76443477	 76444281	+	lnc-AGGF1-3	lnc-AGGF1-3:1	ENSG00000250802.2	CTC-564N23.3	NA	NA	NA	inter
CUST_39141_PI429285431	0.88199025	A	0.97092885	A	0.940214216457201	0	lncRNA	40117-1_{1..2001}	n385762|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dpc.1||1.4005400|-0.3316548	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385762|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dpc.1||1.4005400|-0.3316548	chrX	 50331931	 50333931	-	NA	NA	NA	NA	SHROOM4	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00chrX:50334642-50343932"	NA	inter
CUST_44708_PI429285431	9.9578	P	10.342344	P	0.766021080487736	0	lncRNA	49263-1_{1..1373}	"gi|399124809|ref|NR_073066.1| Homo sapiens nurim (nuclear envelope membrane protein) (NRM), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|399124809|ref|NR_073066.1| Homo sapiens nurim (nuclear envelope membrane protein) (NRM), transcript variant 8, non-coding RNA"	NT_167248.1	  1948757	  1950129	-	11270	NR_073066.1	NA	NA	NA	NA	NA	Unknown
CUST_40719_PI429285431	2.6272936	A	3.134492	P	0.703587423384983	0	lncRNA	41455-1_{1..3000}	n410286|NR_037177_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_7||-0.8256220|-0.3295413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410286|NR_037177_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_7||-0.8256220|-0.3295413	chr6	  4306476	  4309475	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7055_PI429285431	5.368419	P	5.538884	P	0.888556241389483	0	lncRNA	7000-1_{1..477}	"transcript_id ""ENST00000366224.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000366224.2"" | genecode_v17"	chrX	 47157251	 47157727	+	ENSG00000203402.2	ENST00000366224.2	RP11-571E6.3	RP11-571E6.3-001	NA	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00"	NA	inter
CUST_35814_PI429285431	2.364821	A	1.9624417	A	1.32168584536805	0	lncRNA	37220-1_{1..1546}	n344490|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_38|NULL|-1.6727900|-0.1999132	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344490|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_38|NULL|-1.6727900|-0.1999132	chr17	 75084767	 75086312	+	NA	NA	NA	NA	SEC14L1	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30chr17:75084725-75105524"	NA	inner
CUST_29060_PI429285431	3.5863247	P	3.9098113	P	0.799136247888455	0	lncRNA	30788-1_{1..1712}	n326550|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026937|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026937|-1.1287400|-0.4107956	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326550|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026937|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026937|-1.1287400|-0.4107956	chr1	 83141453	 83143164	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25535_PI429285431	0.87309515	A	0.8736583	A	0.999609730340291	0	lncRNA	27065-1_{1..3000}	lnc-ZKSCAN2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZKSCAN2-1:2	chr16	 25151904	 25154903	-	lnc-ZKSCAN2-1	lnc-ZKSCAN2-1:2	ENSG00000260034.1	RP11-266L9.2	LCMT1	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30chr16:25141904-25167569"	NA	inner
CUST_31511_PI429285431	8.196657	P	7.1335297	P	2.08945588624268	0	lncRNA	33272-1_{1..1761}	n337996|AK130929|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|383|NULL|-1.1257700|-0.3328269	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337996|AK130929|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|383|NULL|-1.1257700|-0.3328269	chr1	 71246140	 71247900	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38592_PI429285431	3.863863	P	3.769746	P	1.06741189973512	0	lncRNA	39602-1_{1..3000}	n383669|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002sti.1||2.4714300|-0.3961290	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383669|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002sti.1||2.4714300|-0.3961290	chr2	 89156675	 89159674	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47895_PI429285431	4.891152	P	4.9267173	P	0.975649391214455	0	lncRNA	51788-1_{1..2051}	"gi|410171812|ref|XR_171391.1| PREDICTED: Homo sapiens uncharacterized LOC401068 (LOC401068), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171812|ref|XR_171391.1| PREDICTED: Homo sapiens uncharacterized LOC401068 (LOC401068), misc_RNA"	NA	NA	NA	NA	NA	XR_171391.1	NA	NA	NA	NA	NA	Unknown
CUST_16169_PI429285431	0.9027282	A	0.9176015	A	0.989743573609026	0	lncRNA	17875-2_{3001..4569}	lnc-ZNF727-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF727-7:2	chr7	 63178861	 63180429	+	lnc-ZNF727-7	lnc-ZNF727-7:2	XLOC_006118	linc-ZNF727-5	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-11.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
LNCA_21_P0005885	2.4243164	A	2.7857141	A	0.778410081352916	0	lncRNA	AK054964	NA	AK054964	NA	Hs.575543	XLOC_007182	NA	NA	THC2636730	NA	"BROAD Institute lincRNA (XLOC_007182), lincRNA [TCONS_00015136]"	chr8:111993914-111993855	hs|8q23.2	Agilent_HUMAN_G3V2	AK054964	AK054964	chr8	111993855	111993914	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11217_PI429285431	1.427324	A	0.92688525	A	1.41464371603903	0	lncRNA	12775-1_{1..600}	lnc-TMED5-1:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMED5-1:15	chr1	 93804914	 93805513	-	lnc-TMED5-1	lnc-TMED5-1:15	XLOC_000918	linc-TMED5	DR1	NA	chr1:93811478-93814931	inter
CUST_21081_PI429285431	0.8895613	A	0.9020286	A	0.991395558093277	0	lncRNA	22707-1_{1..635}	lnc-FANCF-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FANCF-3:1	chr11	 22359541	 22360175	-	lnc-FANCF-3	lnc-FANCF-3:1	ENSG00000254768.1	CTD-2140G10.2	SLC17A6	NA	chr11:22359667-22369791	inner
CUST_23604_PI429285431	3.928631	P	3.8589997	P	1.04944844877157	0	lncRNA	25170-1_{1..685}	lnc-RPRML-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPRML-3:10	chr17	 45144780	 45145464	-	lnc-RPRML-3	lnc-RPRML-3:10	ENSG00000262879.1	RP11-156P1.3	NA	NA	NA	inter
CUST_52023_PI429285431	1.7991822	A	1.2464936	A	1.46681670343058	0	lncRNA	55554-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017147 range=chr21:16189151-16230015 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017147 range=chr21:16189151-16230015 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 16189151	 16192150	-	NA	NA	NA	NA	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-13.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.01;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80"	NA	inter
CUST_12302_PI429285431	1.1137344	A	0.9233922	A	1.14103433137135	0	lncRNA	13915-1_{1..1483}	lnc-ZNF608-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF608-8:1	chr5	123472905	123474387	-	lnc-ZNF608-8	lnc-ZNF608-8:1	XLOC_004978	linc-CEP120-1	NA	NA	NA	inter
CUST_37394_PI429285431	7.938178	P	7.4432187	P	1.40928099722782	0	lncRNA	38498-1_{1..1685}	n345846|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1395|NULL|-1.5067700|-0.2231707	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345846|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1395|NULL|-1.5067700|-0.2231707	chr2	 65534351	 65536035	-	NA	NA	NA	NA	SPRED2	"hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.91;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr2:65537985-65546132"	NA	inter
CUST_38681_PI429285431	1.0028458	A	0.92745495	A	1.05364644757911	0	lncRNA	39680-1_{1..2280}	n384026|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zcj.1||-0.8117440|-0.1834300	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384026|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zcj.1||-0.8117440|-0.1834300	chr21	 44263800	 44266079	-	NA	NA	NA	NA	WDR4	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50chr21:44263204-44276080"	NA	inner
CUST_14129_PI429285431	4.3144736	P	4.2044396	P	1.07925367098045	0	lncRNA	15779-1_{1..367}	lnc-C1orf204-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf204-1:3	chr1	159749016	159749382	-	lnc-C1orf204-1	lnc-C1orf204-1:3	XLOC_001061	linc-CRP	DUSP23	NA	chr1:159750759-159752333	inter
CUST_2145_PI429285431	0.8994145	A	0.8983777	A	1.00071891329118	0	lncRNA	2136-1_{1..499}	"transcript_id ""ENST00000508437.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508437.1"" | genecode_v17"	chr5	 40260759	 40261257	+	ENSG00000250585.1	ENST00000508437.1	LINC00604	LINC00604-001	NA	NA	NA	inter
LNCA_21_P0008328	1.2085842	A	2.1512299	A	0.520277888481536	0	lncRNA	TCONS_00022481	NA	NA	NA	NA	XLOC_010810	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010810), lincRNA [TCONS_00022481]"	chr14:39434429-39434488	hs|14q21.1	Agilent_HUMAN_G3V2	TCONS_00022481	TCONS_00022481	chr14	 39434429	 39434488	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48903_PI429285431	0.9249448	A	2.9822805	A	0.240259319769304	0	lncRNA	52744-1_{1..1551}	hg19_lincRNAsTranscripts_TCONS_l2_00018758 range=chr3:116428666-116435885 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018758 range=chr3:116428666-116435885 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	116428666	116430216	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15691_PI429285431	1.7482214	A	2.1924496	A	0.734977403076718	0	lncRNA	17378-1_{1..654}	lnc-ZSCAN30-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZSCAN30-2:2	chr18	 32493590	 32494243	-	lnc-ZSCAN30-2	lnc-ZSCAN30-2:2	XLOC_012810	linc-NOL4-2	NA	NA	NA	inter
CUST_13781_PI429285431	0.89325184	A	1.531169	A	0.64264006826879	0	lncRNA	15423-1_{1..223}	lnc-AJAP1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AJAP1-3:2	chr1	  5075806	  5076028	+	lnc-AJAP1-3	lnc-AJAP1-3:2	XLOC_000036	linc-KCNAB2-2	NA	NA	NA	inter
CUST_47037_PI429285431	8.953667	P	8.709394	P	1.18449573180434	0	lncRNA	51126-1_{1..2424}	"gi|223278345|ref|NR_026707.1| Homo sapiens C-type lectin domain family 4, member M (CLEC4M), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223278345|ref|NR_026707.1| Homo sapiens C-type lectin domain family 4, member M (CLEC4M), transcript variant 4, non-coding RNA"	Chr19	  7828035	  7830458	+	10332	NR_026707.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002273	1.0790113	A	2.0034735	A	0.526876887670991	0	lncRNA	TCONS_00003823	NA	NA	NA	NA	XLOC_001635	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001635), lincRNA [TCONS_00003823]"	chr2:118423789-118423848	hs|2q14.1	Agilent_HUMAN_G3V2	TCONS_00003823	TCONS_00003823	chr2	118423789	118423848	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16705_PI429285431	2.1239433	A	1.1863592	A	1.91531820908567	0	lncRNA	18411-2_{3001..5490}	lnc-SLC12A7-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC12A7-4:1	chr5	  1000386	  1002875	-	lnc-SLC12A7-4	lnc-SLC12A7-4:1	XLOC_004698	linc-BRD9-3	LOC100506688	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr5:988425-997455"	NA	inner
CUST_42396_PI429285431	8.428637	P	8.732718	P	0.809957997327146	0	lncRNA	45091-1_{1..96}	ENST00000516029 ncrna:snoRNA chromosome:GRCh37:11:37723675:37723770:-1 gene:ENSG00000251838 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516029 ncrna:snoRNA chromosome:GRCh37:11:37723675:37723770:-1 gene:ENSG00000251838 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 37723675	 37723770	-	ENSG00000251838	ENST00000516029	NA	NA	NA	NA	NA	inter
CUST_38535_PI429285431	0.8920124	A	1.0365841	A	0.904647904989778	0	lncRNA	39545-2_{3001..3756}	n383215|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jfb.3||4.5579800|-0.3380341	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n383215|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jfb.3||4.5579800|-0.3380341	chr17	 62965667	 62966422	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15367_PI429285431	3.2641542	P	3.6305637	P	0.775710642389943	0	lncRNA	17050-1_{1..986}	lnc-ZNF516-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF516-5:4	chr18	 74350506	 74351491	-	lnc-ZNF516-5	lnc-ZNF516-5:4	XLOC_012893	linc-ZNF516-1	NA	NA	NA	inter
CUST_17136_PI429285431	0.8770857	A	0.87753063	A	0.999691645575954	0	lncRNA	18845-1_{1..2945}	lnc-SRD5A1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRD5A1-1:8	chr5	  6585887	  6588831	+	lnc-SRD5A1-1	lnc-SRD5A1-1:8	XLOC_004271	linc-SRD5A1	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30"	NA	inter
LNCA_21_P0012081	2.340547	A	1.3801717	A	1.9458160099433	0	lncRNA	ENST00000439494	NA	NA	NA	NA	XLOC_l2_008203	NA	ENST00000439494	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008203), lincRNA [TCONS_l2_00015922]"	chr2:112227356-112227297	hs|2q13	Agilent_HUMAN_G3V2	ENST00000439494	ENST00000439494	chr2	112227297	112227356	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5368_PI429285431	1.914179	A	2.5040984	A	0.664380023370531	0	lncRNA	5305-1_{1..548}	"transcript_id ""ENST00000558427.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558427.1"" | genecode_v17"	chr15	101390469	101391016	+	ENSG00000232386.4	ENST00000558427.1	RP11-66B24.2	RP11-66B24.2-003	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90"	NA	inter
LNCA_21_P0005467	2.5586076	A	3.3265765	P	0.587243644609583	0	lncRNA	TCONS_00013683	NA	NA	NA	NA	XLOC_006345	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006345), lincRNA [TCONS_00013683]"	chr7:4645505-4645446	hs|7p22.1	Agilent_HUMAN_G3V2	TCONS_00013683	TCONS_00013683	chr7	  4645446	  4645505	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003020	0.8747368	A	1.1143814	A	0.846953929114618	0	lncRNA	TCONS_00006187	NA	NA	NA	NA	XLOC_002788	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002788), lincRNA [TCONS_00006187]"	chr3:122998383-122998762	hs|3q21.1	Agilent_HUMAN_G3V2	TCONS_00006187	TCONS_00006187	chr3	122998383	122998762	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002960	2.8023906	A	4.3301935	P	0.346805119322323	0	lncRNA	AK093691	NA	AK093691	NA	Hs.561160	XLOC_002650	NA	NA	THC2509013	NA	"BROAD Institute lincRNA (XLOC_002650), lincRNA [TCONS_00006023]"	chr3:50709299-50709358	hs|3p21.2	Agilent_HUMAN_G3V2	AK093691	AK093691	chr3	 50709299	 50709358	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39985_PI429285431	14.734017	P	15.110931	P	0.770083078026512	0	lncRNA	40854-1_{1..1413}	n407078|NR_024575|lncRNA|Homosapiens||RefGeneNoncode|NR_024575||3.0998800|-0.1917064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407078|NR_024575|lncRNA|Homosapiens||RefGeneNoncode|NR_024575||3.0998800|-0.1917064	chr17	 27041298	 27042710	-	NA	NA	NA	NA	RPL23A	NA	chr17:27047000-27051374	inner
LNCA_21_P0005637	0.87463844	A	0.87698483	A	0.998374928248379	0	lncRNA	THC2592463	NA	NA	NA	NA	XLOC_007043	NA	NA	THC2592463	NA	"BROAD Institute lincRNA (XLOC_007043), lincRNA [TCONS_00014557]"	chr8:030045190-030045131	hs|8p12	Agilent_HUMAN_G3V2	THC2592463	THC2592463	chr8	 30045131	 30045190	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31910_PI429285431	1.4705226	A	1.4388313	A	1.02220978034521	0	lncRNA	33640-1_{1..972}	n338465|AL050068|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|862|NULL|-1.0070800|-0.2140300	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338465|AL050068|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|862|NULL|-1.0070800|-0.2140300	chr1	202101762	202102733	+	NA	NA	NA	NA	ARL8A	NA	chr1:202101977-202112716	inner
CUST_18816_PI429285431	3.2640135	P	2.742262	A	1.43569719468286	0	lncRNA	20510-1_{1..862}	lnc-FAM19A1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM19A1-1:3	chr3	 67800838	 67801699	+	lnc-FAM19A1-1	lnc-FAM19A1-1:3	ENSG00000241316	RP11-81N13.1	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
CUST_42783_PI429285431	0.87585604	A	0.8762673	A	0.999714976917322	0	lncRNA	45772-1_{1..68}	ENST00000516475 ncrna:snoRNA chromosome:GRCh37:18:56267863:56267930:1 gene:ENSG00000252284 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516475 ncrna:snoRNA chromosome:GRCh37:18:56267863:56267930:1 gene:ENSG00000252284 gene_biotype:snoRNA transcript_biotype:snoRNA	chr18	 56267863	 56267930	+	ENSG00000252284	ENST00000516475	NA	NA	ALPK2	NA	chr18:56257863-56277930	inner
CUST_26960_PI429285431	0.89068043	A	0.90321845	A	0.991346961700069	0	lncRNA	28482-1_{1..409}	n324043|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053013|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053013|-0.6681470|-0.3076724	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324043|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053013|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053013|-0.6681470|-0.3076724	chr9	 92265625	 92266033	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45066_PI429285431	13.230431	P	13.836878	P	0.656812277437338	0	lncRNA	49553-2_{3001..6000}	"gi|374349220|ref|NR_046216.1| Homo sapiens uncharacterized protein MGC27345 (MGC27345), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|374349220|ref|NR_046216.1| Homo sapiens uncharacterized protein MGC27345 (MGC27345), non-coding RNA"	Chr7	127940738	127943737	-	157247	NR_046216.1	NA	NA	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10"	NA	inter
CUST_135_PI429285431	3.2682712	P	3.747446	P	0.717387841800506	0	lncRNA	127-1_{1..2226}	"transcript_id ""ENST00000321399.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000321399.3"" | genecode_v17"	chr1	  2976179	  2978404	-	ENSG00000177133.5	ENST00000321399.3	RP1-163G9.1	RP1-163G9.1-001	PRDM16	NA	chr1:2985742-2990350	inter
CUST_52030_PI429285431	0.91125304	A	0.9657235	A	0.962947827432324	0	lncRNA	55560-1_{1..1492}	hg19_lincRNAsTranscripts_TCONS_l2_00016981 range=chr21:17999850-18012953 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016981 range=chr21:17999850-18012953 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr21	 17999850	 18001341	+	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70"	NA	inter
CUST_33011_PI429285431	1.9762366	A	1.8360252	A	1.10206659131143	0	lncRNA	34626-1_{1..1621}	n339693|CR622861|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2138|NULL|-1.2622600|-0.4283804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339693|CR622861|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2138|NULL|-1.2622600|-0.4283804	chr3	173946183	173947803	+	NA	NA	NA	NA	NLGN1	NA	chr3:173936183-173957804	inner
CUST_39699_PI429285431	3.0730996	P	1.415689	A	3.15449835837163	0	lncRNA	40636-1_{1..1895}	n405504|NR_002451|lncRNA|Homosapiens||RefGeneNoncode|NR_002451||3.3560500|-0.2506742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405504|NR_002451|lncRNA|Homosapiens||RefGeneNoncode|NR_002451||3.3560500|-0.2506742	chr4	   419223	   421117	-	NA	NA	NA	NA	ZNF721	NA	chr4:428134-477998	inner
CUST_17757_PI429285431	0.87985724	A	0.88258225	A	0.998112949723952	0	lncRNA	19489-1_{1..715}	lnc-FNDC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FNDC1-2:1	chr6	159551896	159552610	+	lnc-FNDC1-2	lnc-FNDC1-2:1	XLOC_005521	linc-FNDC1-2	NA	"hg19_refFlat_ING5:range=chr2:242641481-2426644465'pad=0,hg19_refFlat_ING5:range=chr2:242641481-2426644465'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10"	NA	inter
LNCA_21_P0002673	0.8775221	A	0.880195	A	0.998149002114565	0	lncRNA	TCONS_00005222	NA	NA	NA	NA	XLOC_002244	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002244), lincRNA [TCONS_00005222]"	chr2:105810852-105810793	hs|2q12.1	Agilent_HUMAN_G3V2	TCONS_00005222	TCONS_00005222	chr2	105810793	105810852	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12815_PI429285431	3.2498856	P	3.3743849	P	0.917322352754232	0	lncRNA	14444-1_{1..708}	lnc-KBTBD12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KBTBD12-1:1	chr3	127577385	127578092	+	lnc-KBTBD12-1	lnc-KBTBD12-1:1	XLOC_002805	linc-KBTBD12-1	NA	NA	NA	inter
CUST_49109_PI429285431	0.87349135	A	1.0924528	A	0.859183712737067	0	lncRNA	52933-1_{1..247}	hg19_lincRNAsTranscripts_TCONS_l2_00021132 range=chr4:49244795-49247226 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021132 range=chr4:49244795-49247226 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 49244795	 49245041	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4109_PI429285431	0.8852954	A	0.9054737	A	0.986110825357104	0	lncRNA	4070-1_{1..566}	"transcript_id ""ENST00000530572.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530572.1"" | genecode_v17"	chr11	126790084	126790649	-	ENSG00000254938.1	ENST00000530572.1	RP11-688I9.4	RP11-688I9.4-001	KIRREL3	NA	chr11:126780084-126820555	inner
LNCA_21_P0005758	0.8748672	A	2.3331165	A	0.363934493355969	0	lncRNA	TCONS_00014847	NA	NA	NA	NA	XLOC_006911	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006911), lincRNA [TCONS_00014847]"	chr8:123006242-123006301	hs|8q24.13	Agilent_HUMAN_G3V2	TCONS_00014847	TCONS_00014847	chr8	123006242	123006301	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006569	8.749396	P	9.001113	P	0.839896231378455	0	lncRNA	TCONS_00017454	NA	NA	NA	NA	XLOC_008047	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008047), lincRNA [TCONS_00017454]"	chrX:113220327-113220386	hs|Xq23	Agilent_HUMAN_G3V2	TCONS_00017454	TCONS_00017454	chrX	113220327	113220386	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21225_PI429285431	1.6970322	A	1.5848339	A	1.08087395912886	0	lncRNA	22851-1_{1..696}	lnc-FAM92A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM92A1-1:1	chr8	 94746124	 94746819	+	lnc-FAM92A1-1	lnc-FAM92A1-1:1	ENSG00000253722.1	RBM12B-AS2	FAM92A1	"hg19_refFlat_RBM12B:range=chr8:94745633-947486385'pad=0,hg19_refFlat_RBM12B:range=chr8:94745633-947486385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70chr8:94736124-94740674"	NA	inner
CUST_25439_PI429285431	5.23309	P	5.3218393	P	0.940337592654826	0	lncRNA	26969-1_{1..588}	lnc-RP11-404P21.6.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-404P21.6.1-2:1	chr14	 96709891	 96710478	-	lnc-RP11-404P21.6.1-2	lnc-RP11-404P21.6.1-2:1	ENSG00000258533.1	RP11-404P21.2	BDKRB2	NA	chr14:96699891-96710666	inner
CUST_7597_PI429285431	1.1495855	A	0.8753225	A	1.2093761222351	0	lncRNA	9232-1_{1..2592}	lnc-GADD45B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GADD45B-1:1	chr19	  2651988	  2654579	+	lnc-GADD45B-1	lnc-GADD45B-1:1	ENSG00000247581	ENST00000499536	GNG7	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-27.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chr19:2641988-2646281"	NA	inner
CUST_3800_PI429285431	3.9089475	P	4.4725757	P	0.676598460683605	0	lncRNA	3768-1_{1..392}	"transcript_id ""ENST00000601466.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601466.1"" | genecode_v17"	chr10	109798370	109798761	-	ENSG00000229981.2	ENST00000601466.1	RP11-215N21.1	RP11-215N21.1-003	NA	NA	NA	inter
CUST_36648_PI429285431	6.526349	P	6.1604614	P	1.28867422629593	0	lncRNA	37838-1_{1..1279}	n345142|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_691|NULL|-1.2838900|-0.2747730	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345142|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_691|NULL|-1.2838900|-0.2747730	chr11	 47624357	 47625635	+	NA	NA	NA	NA	C1QTNF4	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90chr11:47614357-47615961"	NA	inter
CUST_45891_PI429285431	0.9263484	A	1.8671877	A	0.520929736985764	0	lncRNA	50207-4_{9001..11857}	"gi|403048748|ref|NR_073143.1| Homo sapiens progesterone receptor (PGR), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|403048748|ref|NR_073143.1| Homo sapiens progesterone receptor (PGR), transcript variant 6, non-coding RNA"	Chr11	100909355	100912211	-	5241	NR_073143.2	NA	NA	NA	NA	NA	inter
CUST_210_PI429201921	2.775362	A	1.4242351	A	2.55111317036514	0	lncRNA	166-2_{3001..5487}	TC0Y000273.hg.1	TCONS_l2_00031002-XLOC_l2_015904 // Broad TUCP // linc-BPY2B-1 chrY:+:24795437-24800925 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:+:24795437-24800925	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031002-XLOC_l2_015904	linc-BPY2B-1	chrY	 24795437	 24800925	+	NA	NA	NA	NA	PLA2G2C	NA	chr1:20490484-20497059	Unknown
CUST_22588_PI429285431	3.7956471	P	4.560709	P	0.588428121082312	0	lncRNA	24172-1_{1..910}	lnc-FSIP1-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FSIP1-6:4	chr15	 39602818	 39603727	-	lnc-FSIP1-6	lnc-FSIP1-6:4	ENSG00000259447.1	RP11-462P6.1	NA	NA	NA	inter
CUST_30360_PI429285431	4.235627	P	3.5730646	P	1.5828915343497	0	lncRNA	32136-1_{1..242}	n335455|AY735339|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257412|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257412|0.4762320|-0.2831296	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335455|AY735339|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257412|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257412|0.4762320|-0.2831296	chr20	   480509	   480750	-	NA	NA	NA	NA	CSNK2A1	NA	chr20:470509-524482	inner
CUST_10819_PI429285431	1.0202835	A	1.0389001	A	0.987178856405852	0	lncRNA	12354-1_{1..464}	lnc-RP11-201M22.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-201M22.1.1-1:1	chr11	 91528475	 91528938	+	lnc-RP11-201M22.1.1-1	lnc-RP11-201M22.1.1-1:1	XLOC_009248	linc-FAT3-3	NA	NA	NA	inter
LNCA_21_P0002496	6.5591273	P	5.596126	P	1.94936101833463	0	lncRNA	TCONS_00004419	NA	NA	NA	NA	XLOC_002291	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002291), lincRNA [TCONS_00004419]"	chr2:118967047-118966988	hs|2q14.2	Agilent_HUMAN_G3V2	TCONS_00004419	TCONS_00004419	chr2	118966988	118967047	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25443_PI429285431	5.482217	P	5.6483483	P	0.891229381219555	0	lncRNA	26973-1_{1..2585}	lnc-GATA5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GATA5-2:2	chr20	 61148633	 61151217	-	lnc-GATA5-2	lnc-GATA5-2:2	ENSG00000174403.11	C20orf166-AS1	C20orf166	NA	chr20:61147660-61158731	inner
CUST_31456_PI429285431	2.592964	A	2.4293828	A	1.12006402356733	0	lncRNA	33223-1_{1..3000}	n337929|D83776|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|314|NULL|12.3272000|-0.3353218	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337929|D83776|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|314|NULL|12.3272000|-0.3353218	chr1	 52888956	 52891955	-	NA	NA	NA	NA	ZCCHC11	NA	chr1:52888947-53001570	inner
CUST_31433_PI429285431	0.8873511	A	1.1163604	A	0.853220598005037	0	lncRNA	33204-1_{1..379}	n337903|L23870|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|286|NULL|-1.0813800|-0.3482157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337903|L23870|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|286|NULL|-1.0813800|-0.3482157	chrX	154739489	154739867	+	NA	NA	NA	NA	TMLHE	NA	chrX:154729489-154749868	inner
LNCA_21_P0003194	3.7427003	P	2.2967384	A	2.72444411873798	0	lncRNA	TCONS_00006717	NA	NA	NA	NA	XLOC_003345	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003345), lincRNA [TCONS_00006717]"	chr3:181281473-181281414	hs|3q26.33	Agilent_HUMAN_G3V2	TCONS_00006717	TCONS_00006717	chr3	181281414	181281473	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49094_PI429285431	0.8836803	A	0.8948572	A	0.992282695768108	0	lncRNA	52918-1_{1..345}	hg19_lincRNAsTranscripts_TCONS_l2_00020408 range=chr4:9713132-9735249 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020408 range=chr4:9713132-9735249 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	  9713132	  9713476	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21184_PI429285431	8.751556	P	8.723474	P	1.01965563660842	0	lncRNA	22809-1_{1..891}	lnc-MCTP2-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MCTP2-7:2	chr15	 95399365	 95400255	+	lnc-MCTP2-7	lnc-MCTP2-7:2	ENSG00000260521.1	CTD-2576F9.2	NA	NA	NA	inter
CUST_12791_PI429285431	1.7647861	A	2.329564	A	0.676059486501432	0	lncRNA	14418-1_{1..575}	lnc-ATXN3L-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATXN3L-3:2	chrX	 13437688	 13438262	-	lnc-ATXN3L-3	lnc-ATXN3L-3:2	XLOC_008116	linc-ATXN3L	NA	NA	NA	inter
CUST_13273_PI429285431	0.9730723	A	0.94181	A	1.02190586109032	0	lncRNA	14904-1_{1..675}	lnc-PDCD6IP-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDCD6IP-2:9	chr3	 34604268	 34604942	+	lnc-PDCD6IP-2	lnc-PDCD6IP-2:9	XLOC_002612	linc-ARPP21-1	NA	NA	NA	inter
CUST_44049_PI429285431	2.8318276	A	2.6943977	A	1.09994386612817	0	lncRNA	48724-3_{6001..7827}	"gi|401709976|ref|NR_073108.1| Homo sapiens Kruppel-like factor 7 (ubiquitous) (KLF7), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|401709976|ref|NR_073108.1| Homo sapiens Kruppel-like factor 7 (ubiquitous) (KLF7), transcript variant 5, non-coding RNA"	Chr2	207944861	207946687	-	8609	NR_073108.1	NA	NA	NA	NA	NA	inter
CUST_40054_PI429285431	7.043881	P	5.9131894	P	2.1896368203571	0	lncRNA	40906-2_{3001..6000}	n407257|NR_026718|lncRNA|Homosapiens||RefGeneNoncode|NR_026718||6.9737300|-0.2577804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n407257|NR_026718|lncRNA|Homosapiens||RefGeneNoncode|NR_026718||6.9737300|-0.2577804	chr17	 18572235	 18575234	-	NA	NA	NA	NA	ZNF286B	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-20.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30chr17:18561742-18585572"	NA	inner
CUST_32474_PI429285431	4.119003	P	3.714482	P	1.32364936267907	0	lncRNA	34143-1_{1..1175}	n339076|BC021142|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1506|NULL|-0.8965500|-0.3075492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339076|BC021142|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1506|NULL|-0.8965500|-0.3075492	chr16	 11032735	 11033909	-	NA	NA	NA	NA	CLEC16A	NA	chr16:11038345-11043901	inner
CUST_12325_PI429285431	5.554455	P	5.6291966	P	0.949512172116604	0	lncRNA	13938-1_{1..1091}	lnc-PIK3CG-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIK3CG-3:1	chr7	106268696	106269786	+	lnc-PIK3CG-3	lnc-PIK3CG-3:1	XLOC_006198	linc-PIK3CG-3	NA	NA	NA	inter
CUST_19160_PI429285431	1.4461137	A	0.9262324	A	1.43383727194941	0	lncRNA	20830-3_{6001..9000}	lnc-GPR125-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-GPR125-2:1	chr4	 21850963	 21853962	-	lnc-GPR125-2	lnc-GPR125-2:1	UM9-5	NCRNA00099	KCNIP4	NA	chr4:21834963-21864811	inner
LNCA_21_P0006841	0.87859935	A	0.8867606	A	0.994359022970994	0	lncRNA	TCONS_00018135	NA	NA	NA	NA	XLOC_008411	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008411), lincRNA [TCONS_00018135]"	chr10:22762042-22762101	hs|10p12.2	Agilent_HUMAN_G3V2	TCONS_00018135	TCONS_00018135	chr10	 22762042	 22762101	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4698_PI429285431	1.4510243	A	1.2687429	A	1.13467678389392	0	lncRNA	4645-1_{1..428}	"transcript_id ""ENST00000418660.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418660.1"" | genecode_v17"	chr13	112760409	112760836	-	ENSG00000229520.1	ENST00000418660.1	LINC00404	LINC00404-001	NA	NA	NA	inter
CUST_25022_PI429285431	2.5462162	A	1.1087079	A	2.70852667631228	0	lncRNA	26562-1_{1..780}	lnc-CHADL-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHADL-1:2	chr22	 41613397	 41614176	-	lnc-CHADL-1	lnc-CHADL-1:2	ENSG00000235513.1	RP4-756G23.5	L3MBTL2	"hg19_refFlat_L3MBTL2:range=chr22:41601367-416262555'pad=0,hg19_refFlat_L3MBTL2:range=chr22:41601367-416262555'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00chr22:41603397-41623627"	NA	inner
CUST_17149_PI429285431	0.90629756	A	1.1904725	A	0.821211115337959	0	lncRNA	18857-1_{1..1110}	lnc-TMEM132C-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132C-1:3	chr12	128605772	128606881	+	lnc-TMEM132C-1	lnc-TMEM132C-1:3	XLOC_009948	linc-TMEM132C-1	NA	NA	NA	inter
CUST_24142_PI429285431	0.89535886	A	0.88759243	A	1.00539779494021	0	lncRNA	25694-1_{1..678}	lnc-AEBP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AEBP2-2:1	chr12	 19412454	 19413131	+	lnc-AEBP2-2	lnc-AEBP2-2:1	ENSG00000257006.1	RP11-684O24.1	PLEKHA5	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-62.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60chr12:19402454-19422877"	NA	inner
CUST_34965_PI429285431	1.5934552	A	1.4637148	A	1.09409681066388	0	lncRNA	36382-1_{1..2494}	n341887|AL137630|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4367|NULL|-1.1705500|-0.4708052	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341887|AL137630|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4367|NULL|-1.1705500|-0.4708052	chr6	 55310231	 55312724	-	NA	NA	NA	NA	HMGCLL1	NA	chr6:55300231-55322709	inner
LNCA_21_P0003601	0.8746289	A	1.340643	A	0.72396201060281	0	lncRNA	TCONS_00008047	NA	NA	NA	NA	XLOC_003511	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003511), lincRNA [TCONS_00008047]"	chr4:38548208-38548267	hs|4p14	Agilent_HUMAN_G3V2	TCONS_00008047	TCONS_00008047	chr4	 38548208	 38548267	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10689_PI429285431	0.9011769	A	0.94674015	A	0.968911465368223	0	lncRNA	12223-1_{1..441}	lnc-ACSM4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACSM4-1:1	chr12	  7494250	  7494690	+	lnc-ACSM4-1	lnc-ACSM4-1:1	XLOC_009637	linc-DPPA3	NA	NA	NA	inter
LNCA_21_P0014148	0.8752135	A	0.8763886	A	0.999185814377256	0	lncRNA	XR_108599	XR_108599	XR_108599	NA	NA	LOC100506329	uncharacterized LOC100506329	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506329 (LOC100506329), miscRNA [XR_108599]"	chr5:50757933-50757992	hs|5q11.2	Agilent_HUMAN_G3V2	XR_108599	XR_108599	chr5	 50757933	 50757992	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43532_PI429285431	2.9324887	A	2.2524986	A	1.60212876108229	0	lncRNA	48316-1_{1..633}	"gi|387527975|ref|NR_046653.1| Homo sapiens VAV3 antisense RNA 1 (VAV3-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|387527975|ref|NR_046653.1| Homo sapiens VAV3 antisense RNA 1 (VAV3-AS1), non-coding RNA"	Chr1	108507065	108507697	+	100873946	NR_046653.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008704	2.4100385	A	0.9057923	A	2.83676413189835	0	lncRNA	TCONS_00023572	NA	NA	NA	NA	XLOC_011396	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011396), lincRNA [TCONS_00023572]"	chr15:22525840-22525781	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023572	TCONS_00023572	chr15	 22525781	 22525840	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17784_PI429285431	5.5234404	P	5.3945823	P	1.09342790526738	0	lncRNA	19516-1_{1..485}	lnc-AC136604.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC136604.1-1:3	chr5	179091324	179091808	+	lnc-AC136604.1-1	lnc-AC136604.1-1:3	XLOC_004677	linc-CANX-1	CBY3	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20chr5:179081324-179101433"	NA	inter
LNCA_21_P0006588	0.8769987	A	0.87794316	A	0.999345564450267	0	lncRNA	ENST00000444263	NA	NA	NA	NA	XLOC_008276	NA	ENST00000444263	NA	NA	"BROAD Institute lincRNA (XLOC_008276), lincRNA [TCONS_00017606]"	chrY:2965199-2965258	hs|Yp11.31	Agilent_HUMAN_G3V2	ENST00000444263	ENST00000444263	chrY	  2965199	  2965258	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010719	0.8775686	A	1.272348	A	0.760605670624871	0	lncRNA	ENST00000412492	NA	NA	NA	NA	XLOC_l2_000399	NA	ENST00000412492	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000399), lincRNA [TCONS_l2_00002164]"	chr1:143391802-143392068	hs|1q21.1	Agilent_HUMAN_G3V2	ENST00000412492	ENST00000412492	chr1	143391802	143392068	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22714_PI429285431	4.2201233	P	4.7430778	P	0.695945144424309	0	lncRNA	24298-1_{1..1289}	lnc-EVX1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EVX1-5:1	chr7	 27228220	 27229508	+	lnc-EVX1-5	lnc-EVX1-5:1	ENSG00000240990.4	HOXA11-AS	HOXA10	"hg19_refFlat_HOXA11:range=chr7:27222415-272247635'pad=0,hg19_refFlat_HOXA11:range=chr7:27222415-272247635'pad=0 3'pad=0 strand=- repeatMasking=none,-111.30chr7:27218220-27219880"	NA	inter
LNCA_21_P0002578	0.87773335	A	0.879386	A	0.998855126180718	0	lncRNA	TCONS_00004715	NA	NA	NA	NA	XLOC_001391	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001391), lincRNA [TCONS_00004715]"	chr2:22422024-22422083	hs|2p24.1	Agilent_HUMAN_G3V2	TCONS_00004715	TCONS_00004715	chr2	 22422024	 22422083	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48688_PI429285431	3.3550768	P	3.8540304	P	0.707619838287238	0	lncRNA	52529-1_{1..1193}	hg19_lincRNAsTranscripts_TCONS_l2_00013872 range=chr2:105470381-105471715 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013872 range=chr2:105470381-105471715 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	105470381	105471573	+	NA	NA	NA	NA	POU3F3	NA	chr2:105471969-105473471	inter
CUST_37970_PI429285431	7.371022	P	7.164091	P	1.15423021264889	0	lncRNA	39058-1_{1..513}	n346520|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2070|NULL|-1.2827000|-0.1806838	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346520|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2070|NULL|-1.2827000|-0.1806838	chr2	114354360	114354872	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5157_PI429285431	7.735343	P	7.459821	P	1.21043197191602	0	lncRNA	5097-2_{3001..4020}	"transcript_id ""ENST00000559030.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559030.1"" | genecode_v17"	chr15	 40607816	 40608835	+	ENSG00000259198.1	ENST00000559030.1	RP11-133K1.6	RP11-133K1.6-001	PLCB2	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_RPLP0:range=chr12:120634576-1206385865'pad=0,hg19_refFlat_RPLP0:range=chr12:120634576-1206385865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40chr15:40594816-40600174"	NA	inter
CUST_17838_PI429285431	1.3658576	A	1.0558407	A	1.2397222221923	0	lncRNA	19573-1_{1..288}	lnc-SLC15A4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC15A4-1:3	chr12	128675723	128676010	-	lnc-SLC15A4-1	lnc-SLC15A4-1:3	XLOC_010258	linc-DHX37-12	NA	NA	NA	inter
CUST_24461_PI429285431	2.6247842	A	2.884646	A	0.835167918787251	0	lncRNA	26014-1_{1..547}	lnc-C2orf42-3:23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:23	chr2	 70313256	 70313802	-	lnc-C2orf42-3	lnc-C2orf42-3:23	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_27286_PI429285431	7.1624904	P	6.985736	P	1.13033812543255	0	lncRNA	28842-1_{1..570}	n324435|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041677|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041677|-1.2291300|-0.2117544	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324435|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041677|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041677|-1.2291300|-0.2117544	chr6	107301657	107302226	-	NA	NA	NA	NA	C6orf203	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80chr6:107349407-107352042"	NA	inter
CUST_5713_PI429285431	6.128488	P	4.3927317	P	3.33054044121835	0	lncRNA	5637-1_{1..2107}	"transcript_id ""ENST00000571336.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000571336.1"" | genecode_v17"	chr17	  3710042	  3712148	-	ENSG00000262758.1	ENST00000571336.1	CTD-3195I5.1	CTD-3195I5.1-001	ITGAE	"hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60chr17:3700042-3704537"	NA	inner
CUST_10910_PI429285431	0.9086491	A	0.912733	A	0.997173259006622	0	lncRNA	12454-1_{1..497}	lnc-ACTR2-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACTR2-3:4	chr2	 65981883	 65982379	+	lnc-ACTR2-3	lnc-ACTR2-3:4	XLOC_001504	linc-MEIS1-4	NA	NA	NA	inter
CUST_3866_PI429285431	2.401474	A	1.1207974	A	2.42952891033591	0	lncRNA	3835-1_{1..471}	"transcript_id ""ENST00000532242.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532242.1"" | genecode_v17"	chr11	 15665431	 15665901	+	ENSG00000254695.1	ENST00000532242.1	RP11-396O20.1	RP11-396O20.1-001	NA	NA	NA	inter
LNCA_21_P0008180	1.522862	A	0.9226395	A	1.51595034630018	0	lncRNA	TCONS_00022050	NA	NA	NA	NA	XLOC_010654	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010654), lincRNA [TCONS_00022050]"	chr13:75223563-75223504	hs|13q22.1	Agilent_HUMAN_G3V2	TCONS_00022050	TCONS_00022050	chr13	 75223504	 75223563	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19640_PI429285431	11.345069	P	11.372856	P	0.980923817233319	0	lncRNA	21296-1_{1..533}	lnc-C4orf42-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C4orf42-1:3	chr4	  1244684	  1245216	+	lnc-C4orf42-1	lnc-C4orf42-1:3	ENSG00000196810.4	CTBP1-AS1	CTBP1	NA	chr4:1234684-1242908	inter
LNCA_21_P0008691	0.90209717	A	4.2109985	P	0.100907035395051	0	lncRNA	TCONS_00023545	NA	NA	NA	NA	XLOC_011378	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011378), lincRNA [TCONS_00023545]"	chr15:99561016-99561075	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_00023545	TCONS_00023545	chr15	 99561016	 99561075	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011179	4.0145187	P	3.4520192	P	1.47682563411065	0	lncRNA	AK091626	NA	AK091626	NA	Hs.380803	XLOC_l2_003903	NA	NA	THC2498598	NA	"BROAD Institute lincRNA (XLOC_l2_003903), lincRNA [TCONS_l2_00007079]"	chr13:23490218-23490159	hs|13q12.12	Agilent_HUMAN_G3V2	AK091626	AK091626	chr13	 23490159	 23490218	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45215_PI429285431	0.9037758	A	0.9287662	A	0.982827138464548	0	lncRNA	49677-1_{1..956}	"gi|341915423|ref|XR_108919.2| PREDICTED: Homo sapiens uncharacterized LOC100505739 (LOC100505739), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915423|ref|XR_108919.2| PREDICTED: Homo sapiens uncharacterized LOC100505739 (LOC100505739), misc_RNA"	Chr8	 70337705	 70338660	-	100505739	XR_108919.3	NA	NA	NA	NA	NA	inter
CUST_42237_PI429285431	5.4036703	P	5.289668	P	1.0822263698513	0	lncRNA	44371-1_{1..69}	ENST00000387365 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:4263:4331:1 gene:ENSG00000210100 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000387365 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:4263:4331:1 gene:ENSG00000210100 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	chrMT	     4263	     4331	+	ENSG00000210100	ENST00000387365	NA	NA	NA	NA	NA	Unknown
CUST_669_PI429285431	0.89876306	A	1.085163	A	0.878795909726436	0	lncRNA	662-1_{1..607}	"transcript_id ""ENST00000442831.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442831.1"" | genecode_v17"	chr2	  4184234	  4184840	-	ENSG00000229550.1	ENST00000442831.1	AC012445.1	AC012445.1-001	NA	NA	NA	inter
CUST_25511_PI429285431	1.2910814	A	0.93031776	A	1.28410541385335	0	lncRNA	27041-1_{1..1079}	lnc-SNW1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SNW1-4:1	chr14	 79220067	 79221145	-	lnc-SNW1-4	lnc-SNW1-4:1	ENSG00000258478.1	RP11-232C2.1	NRXN3	NA	chr14:79210067-79230221	inner
LNCA_21_P0008735	0.9056051	A	0.929132	A	0.983824644713717	0	lncRNA	TCONS_00023671	NA	NA	NA	NA	XLOC_011470	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011470), lincRNA [TCONS_00023671]"	chr15:48119763-48106322	hs|15q21.1	Agilent_HUMAN_G3V2	TCONS_00023671	TCONS_00023671	chr15	 48106322	 48119763	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001441	0.90548694	A	0.9288407	A	0.983942722073041	0	lncRNA	TCONS_00001332	NA	NA	NA	NA	XLOC_000625	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000625), lincRNA [TCONS_00001332]"	chr1:234853017-234853076	hs|1q42.3	Agilent_HUMAN_G3V2	TCONS_00001332	TCONS_00001332	chr1	234853017	234853076	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26409_PI429285431	3.8780932	P	3.7165713	P	1.11846638693554	0	lncRNA	27916-1_{1..535}	lnc-OR52H1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR52H1-1:1	chr11	  5646056	  5646590	-	lnc-OR52H1-1	lnc-OR52H1-1:1	ENSG00000239920.1	AC015691.13	TRIM6-TRIM34	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.46;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10chr11:5636056-5656126"	NA	inner
LNCA_33_P3376026	5.779871	P	5.6683717	P	1.08035039186448	0	lncRNA	ENST00000382225	XR_109245	XR_109245	NA	Hs.666223	NA	NA	ENST00000382225	THC2483708	NA	"PREDICTED: Homo sapiens hypothetical LOC100128770 (LOC100128770), miscRNA [XR_109245]"	chr16:3086692-3086751	hs|16p13.3	Agilent_HUMAN_G3V2	ENST00000382225	ENST00000382225	chr16	  3086692	  3086751	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31818_PI429285431	0.91812867	A	1.3560997	A	0.738172025536627	0	lncRNA	33556-1_{1..3000}	n338367|AK123430|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|762|NULL|-0.8159440|-0.2506833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338367|AK123430|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|762|NULL|-0.8159440|-0.2506833	chr14	 71189243	 71192242	-	NA	NA	NA	NA	MAP3K9	NA	chr14:71194852-71203302	inter
CUST_31959_PI429285431	6.7009544	P	7.3108716	P	0.655234306441704	0	lncRNA	33682-1_{1..1523}	n338516|AY007087|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|914|NULL|0.1342240|-0.0980385	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338516|AY007087|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|914|NULL|0.1342240|-0.0980385	chr19	 35759880	 35761402	-	NA	NA	NA	NA	USF2	"hg19_refFlat_USF2:range=chr19:35760005-357701595'pad=0,hg19_refFlat_USF2:range=chr19:35760005-357701595'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.90chr19:35759896-35770718"	NA	inner
CUST_31850_PI429285431	5.580502	P	3.821691	P	3.38419101203505	0	lncRNA	33583-1_{1..1908}	n338398|AK025209|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|794|NULL|-0.9208510|-0.3307998	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338398|AK025209|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|794|NULL|-0.9208510|-0.3307998	chr14	 74429932	 74431839	-	NA	NA	NA	NA	ENTPD5	NA	chr14:74433172-74441758	inter
CUST_16944_PI429285431	7.410328	P	7.8245726	P	0.750412310216323	0	lncRNA	18657-1_{1..2911}	lnc-F13A1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-F13A1-3:2	chr6	  6739263	  6742173	-	lnc-F13A1-3	lnc-F13A1-3:2	XLOC_005595	linc-F13A1-1	NA	NA	NA	inter
CUST_38489_PI429285431	0.90616846	A	0.9272646	A	0.985483662937878	0	lncRNA	39506-1_{1..2788}	n383012|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fcn.2||-0.6964030|-0.2557647	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n383012|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fcn.2||-0.6964030|-0.2557647	chr16	 73420706	 73423493	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10837_PI429285431	1.3727775	A	0.9641338	A	1.32743728291388	0	lncRNA	12373-1_{1..379}	lnc-GPR55-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR55-2:2	chr2	231559266	231559644	-	lnc-GPR55-2	lnc-GPR55-2:2	XLOC_002515	linc-SP110-2	NA	NA	NA	inter
CUST_523_PI429285431	6.1073093	P	5.997193	P	1.07931523985546	0	lncRNA	515-1_{1..615}	"transcript_id ""ENST00000432083.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000432083.1"" | genecode_v17"	chr1	191827837	191828451	-	ENSG00000223344.1	ENST00000432083.1	RP11-541F9.1	RP11-541F9.1-001	NA	NA	NA	inter
LNCA_21_P0006227	1.2750953	A	0.9087009	A	1.28912700030956	0	lncRNA	TCONS_00016159	NA	NA	NA	NA	XLOC_007570	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007570), lincRNA [TCONS_00016159]"	chr9:130343034-130343093	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_00016159	TCONS_00016159	chr9	130343034	130343093	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40761_PI429285431	0.88145536	A	0.88663006	A	0.996419596270802	0	lncRNA	41485-2_{3001..3548}	n410479|NR_037625_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_4||-0.8197030|-0.2330137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410479|NR_037625_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_4||-0.8197030|-0.2330137	chr6	  4278529	  4279076	+	NA	NA	NA	NA	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50"	NA	inter
CUST_37398_PI429285431	0.8770563	A	0.88458467	A	0.994795323071381	0	lncRNA	38503-1_{1..779}	n345851|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1400|NULL|-1.6025000|-0.2045142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345851|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1400|NULL|-1.6025000|-0.2045142	chr16	 18593725	 18594503	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005910	3.0855122	P	2.9626417	P	1.08889926856337	0	lncRNA	ENST00000524079	NA	NA	NA	NA	TMEM71	transmembrane protein 71	ENST00000524079	THC2693793	GO:0016020|GO:0016021	"BROAD Institute lincRNA (XLOC_007224), lincRNA [TCONS_00015177]"	chr8:133699731-133697316	hs|8q24.22	Agilent_HUMAN_G3V2	ENST00000524079	ENST00000524079	chr8	133697316	133699731	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009527	1.5373609	A	0.88906044	A	1.56732075483626	0	lncRNA	TCONS_00026420	NA	NA	NA	NA	XLOC_012767	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012767), lincRNA [TCONS_00026420]"	chr18:11159500-11159441	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_00026420	TCONS_00026420	chr18	 11159441	 11159500	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50497_PI429285431	2.7733603	P	4.2334585	P	0.363468388265966	0	lncRNA	54193-1_{1..519}	hg19_lincRNAsTranscripts_TCONS_l2_00030317 range=chrX:103230848-103232621 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030317 range=chrX:103230848-103232621 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	103230848	103231366	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27987_PI429285431	0.8865843	A	0.8969627	A	0.992832054448445	0	lncRNA	29594-1_{1..769}	n325239|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328439|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328439|-0.0135030|-0.3834729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325239|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328439|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328439|-0.0135030|-0.3834729	chr2	 80780023	 80780791	-	NA	NA	NA	NA	CTNNA2	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr2:80770023-80875993"	NA	inner
CUST_12223_PI429285431	4.579454	P	4.8276525	P	0.841947102376481	0	lncRNA	13827-1_{1..454}	lnc-SLC16A7-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC16A7-3:1	chr12	 59206196	 59206649	+	lnc-SLC16A7-3	lnc-SLC16A7-3:1	XLOC_009781	linc-SLC16A7-3	NA	NA	NA	inter
LNCA_21_P0005179	3.4126635	P	3.1096473	P	1.23372102316575	0	lncRNA	ENST00000436953	NA	NA	NA	NA	XLOC_005883	NA	ENST00000436953	THC2720339	NA	"BROAD Institute lincRNA (XLOC_005883), lincRNA [TCONS_00012813]"	chr6:153625846-153625787	hs|6q25.2	Agilent_HUMAN_G3V2	ENST00000436953	ENST00000436953	chr6	153625787	153625846	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_333_PI429201921	1.2434573	A	1.2850237	A	0.971599464539818	0	lncRNA	220-3_{6001..7888}	TC0Y000305.hg.1	TCONS_l2_00031035-XLOC_l2_015932 // Broad TUCP // linc-AMELY-10 chrY:-:9355207-9363096 // chrY // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00031036-XLOC_l2_015932 // Broad TUCP // linc-AMELY-10 chrY:-:9357274-9362877 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:9355207-9363096	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031035-XLOC_l2_015932	linc-AMELY-10	chrY	  9355207	  9363096	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19668_PI429285431	0.8873118	A	0.88005286	A	1.00504419311686	0	lncRNA	21324-1_{1..269}	lnc-TRAPPC8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRAPPC8-1:1	chr18	 29652866	 29653134	-	lnc-TRAPPC8-1	lnc-TRAPPC8-1:1	ENSG00000263664.1	RP11-53I6.6	RNF125	NA	chr18:29642866-29653154	inner
CUST_10377_PI429285431	0.9028449	A	0.9045967	A	0.998786481678682	0	lncRNA	11905-1_{1..1831}	lnc-ENPP1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENPP1-4:2	chr6	132456580	132458410	+	lnc-ENPP1-4	lnc-ENPP1-4:2	XLOC_005465	linc-TAAR9-1	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70"	NA	inter
CUST_42673_PI429285431	7.1637945	P	7.084775	P	1.05629990259571	0	lncRNA	45586-1_{1..137}	ENST00000364902 ncrna:snoRNA chromosome:GRCh37:7:45144505:45144641:-1 gene:ENSG00000201772 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364902 ncrna:snoRNA chromosome:GRCh37:7:45144505:45144641:-1 gene:ENSG00000201772 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 45144505	 45144641	-	ENSG00000201772	ENST00000364902	NA	NA	TBRG4	NA	chr7:45139699-45151317	inter
LNCA_21_P0012880	8.248039	P	7.970898	P	1.21179108753317	0	lncRNA	ENST00000493082	NA	NA	NA	NA	BRD9	bromodomain containing 9	ENST00000493082	NA	GO:0008150|GO:0005575|GO:0003676	"BROAD Institute lincRNA (XLOC_l2_011902), lincRNA [TCONS_l2_00022725]"	chr5:880158-880099	hs|5p15.33	Agilent_HUMAN_G3V2	ENST00000493082	ENST00000493082	chr5	   880099	   880158	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8608_PI429285431	4.0741286	P	4.378071	P	0.81003581389118	0	lncRNA	10162-1_{1..1006}	lnc-CRYBA4-1:35	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:35	chr22	 27175847	 27176852	+	lnc-CRYBA4-1	lnc-CRYBA4-1:35	ENSG00000244625	XLOC_014192	NA	NA	NA	inter
CUST_42281_PI429285431	4.623498	P	4.471022	P	1.11147538619501	0	lncRNA	44893-1_{1..88}	ENST00000391232 ncrna:snoRNA chromosome:GRCh37:2:203141154:203141241:1 gene:ENSG00000212534 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391232 ncrna:snoRNA chromosome:GRCh37:2:203141154:203141241:1 gene:ENSG00000212534 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	203141154	203141241	+	ENSG00000212534	ENST00000391232	NA	NA	NOP58	NA	chr2:203131154-203151241	inner
CUST_574_PI429285431	2.4821544	A	1.9377868	A	1.45838092825728	0	lncRNA	566-1_{1..390}	"transcript_id ""ENST00000446169.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446169.1"" | genecode_v17"	chr1	220658446	220658835	-	ENSG00000231529.1	ENST00000446169.1	RP11-410C4.4	RP11-410C4.4-001	NA	NA	NA	inter
CUST_18966_PI429285431	5.6470714	P	6.574009	P	0.525973638723787	0	lncRNA	20658-1_{1..1005}	lnc-MTRR-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MTRR-3:1	chr5	  8460046	  8461050	+	lnc-MTRR-3	lnc-MTRR-3:1	ENSG00000247516	RP11-480D4.3	NA	NA	NA	inter
CUST_28076_PI429285431	0.8992951	A	0.88643265	A	1.00895543303163	0	lncRNA	29695-1_{1..494}	n325343|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325416|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325416|-1.0067500|-0.3909611	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325343|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325416|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325416|-1.0067500|-0.3909611	chr2	 35076848	 35077341	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36714_PI429285431	0.9072636	A	1.8717474	A	0.512461738846495	0	lncRNA	37893-1_{1..1809}	n345200|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_749|NULL|-1.2903700|-0.3057280	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345200|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_749|NULL|-1.2903700|-0.3057280	chr13	 51123373	 51125181	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14443_PI429285431	1.2522416	A	1.1938937	A	1.04127266604933	0	lncRNA	16105-1_{1..356}	lnc-AJAP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AJAP1-2:1	chr1	  4612165	  4612520	+	lnc-AJAP1-2	lnc-AJAP1-2:1	XLOC_000034	linc-AJAP1-2	NA	NA	NA	inter
LNCA_21_P0007742	6.0619593	P	6.326665	P	0.832368514923553	0	lncRNA	TCONS_00020884	NA	NA	NA	NA	XLOC_010161	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010161), lincRNA [TCONS_00020884]"	chr12:95318460-95318401	hs|12q22	Agilent_HUMAN_G3V2	TCONS_00020884	TCONS_00020884	chr12	 95318401	 95318460	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014156	0.87764907	A	0.87926435	A	0.998880999770391	0	lncRNA	XR_108632	XR_108632	XR_108632	NA	NA	LOC100507603	uncharacterized LOC100507603	NA	THC2614693	NA	"PREDICTED: Homo sapiens hypothetical LOC100507603 (LOC100507603), miscRNA [XR_108632]"	chr6:5451997-5451938	hs|6p25.1	Agilent_HUMAN_G3V2	XR_108632	XR_108632	chr6	  5451938	  5451997	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34595_PI429285431	6.122982	P	6.4937186	P	0.773387525768472	0	lncRNA	36053-1_{1..1630}	n341479|AK130361|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3949|NULL|-1.1471600|-0.4140486	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341479|AK130361|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3949|NULL|-1.1471600|-0.4140486	chr8	 30885535	 30887164	-	NA	NA	NA	NA	WRN	NA	chr8:30890778-30897165	inner
CUST_34161_PI429285431	2.1587281	A	0.96912956	A	2.28089263744656	0	lncRNA	35679-1_{1..205}	n341005|AJ011595|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3471|NULL|-1.0875100|-0.3479362	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341005|AJ011595|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3471|NULL|-1.0875100|-0.3479362	chr11	 28202411	 28202615	-	NA	NA	NA	NA	METTL15	NA	chr11:28192411-28212616	inner
LNCA_21_P0007731	0.87293	A	1.2175797	A	0.787499165602075	0	lncRNA	TCONS_00020858	NA	NA	NA	NA	XLOC_010141	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010141), lincRNA [TCONS_00020858]"	chr12:82950860-82950801	hs|12q21.31	Agilent_HUMAN_G3V2	TCONS_00020858	TCONS_00020858	chr12	 82950801	 82950860	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9419_PI429285431	5.053507	P	5.61786	P	0.676258627673431	0	lncRNA	10922-1_{1..429}	lnc-RASSF4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RASSF4-1:1	chr10	 45450917	 45451345	+	lnc-RASSF4-1	lnc-RASSF4-1:1	XLOC_008475	linc-RASSF4	RASSF4	NA	chr10:45455219-45461173	inter
CUST_3802_PI429285431	0.90122676	A	0.8944617	A	1.00470019368527	0	lncRNA	3770-1_{1..798}	"transcript_id ""ENST00000595603.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000595603.1"" | genecode_v17"	chr10	109800139	109800936	-	ENSG00000229981.2	ENST00000595603.1	RP11-215N21.1	RP11-215N21.1-014	NA	NA	NA	inter
CUST_29735_PI429285431	7.0201044	P	6.17958	P	1.79070091897183	0	lncRNA	31497-1_{1..357}	n333409|BC009728|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087368|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087368|0.7116120|-0.3006748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333409|BC009728|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087368|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087368|0.7116120|-0.3006748	chr7	 95041707	 95042063	-	NA	NA	NA	NA	PON2	NA	chr7:95034174-95064384	inner
CUST_17008_PI429285431	1.3959495	A	0.9018255	A	1.4084652796532	0	lncRNA	18718-1_{1..661}	lnc-OR2G3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR2G3-1:1	chr1	247803353	247804013	+	lnc-OR2G3-1	lnc-OR2G3-1:1	XLOC_000650	linc-TRIM58	NA	NA	NA	inter
CUST_47415_PI429285431	6.5261025	P	6.4488654	P	1.05499568629485	0	lncRNA	51457-1_{1..3000}	"gi|408440837|ref|NR_073200.1| Homo sapiens adenosine deaminase, RNA-specific, B1 (ADARB1), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|408440837|ref|NR_073200.1| Homo sapiens adenosine deaminase, RNA-specific, B1 (ADARB1), transcript variant 8, non-coding RNA"	Chr21	 46494493	 46497492	+	104	NR_073200.1	NA	NA	NA	NA	NA	inter
CUST_43056_PI429285431	16.37884	P	16.552856	P	0.886371868961768	0	lncRNA	46791-1_{1..89}	ENST00000516204 ncrna:snRNA chromosome:GRCh37:14:75668784:75668872:-1 gene:ENSG00000252013 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516204 ncrna:snRNA chromosome:GRCh37:14:75668784:75668872:-1 gene:ENSG00000252013 gene_biotype:snRNA transcript_biotype:snRNA	chr14	 75668784	 75668872	-	ENSG00000252013	ENST00000516204	NA	NA	NA	NA	NA	inter
CUST_51242_PI429285431	5.115451	P	4.5902333	P	1.43915072879663	0	lncRNA	54855-1_{1..457}	hg19_lincRNAsTranscripts_TCONS_l2_00008930 range=chr15:23185234-23196186 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008930 range=chr15:23185234-23196186 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 23185234	 23185690	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41738_PI429285431	5.979697	P	6.0664587	P	0.941633987948333	0	lncRNA	43270-1_{1..84}	ENST00000384893 ncrna:miRNA chromosome:GRCh37:3:35785968:35786051:1 gene:ENSG00000207625 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384893 ncrna:miRNA chromosome:GRCh37:3:35785968:35786051:1 gene:ENSG00000207625 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 35785968	 35786051	+	ENSG00000207625	ENST00000384893	NA	NA	ARPP21	NA	chr3:35775968-35796051	inner
CUST_31588_PI429285431	0.92668283	A	0.988542	A	0.958028732512037	0	lncRNA	33345-1_{1..2568}	n338093|BC037337|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|480|NULL|-1.0122600|-0.3662476	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338093|BC037337|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|480|NULL|-1.0122600|-0.3662476	chr1	 94634464	 94637031	-	NA	NA	NA	NA	ARHGAP29	NA	chr1:94634463-94647015	inner
CUST_38967_PI429285431	1.8906178	A	2.1688516	A	0.824599904925982	0	lncRNA	39951-1_{1..2760}	n385187|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ttf.2||2.9291800|-0.2108034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385187|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ttf.2||2.9291800|-0.2108034	chr7	 64141510	 64144269	+	NA	NA	NA	NA	ZNF107	NA	chr7:64131510-64157263	inner
CUST_1511_PI429285431	9.132524	P	9.145212	P	0.991243908397048	0	lncRNA	1498-1_{1..873}	"transcript_id ""ENST00000489090.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000489090.1"" | genecode_v17"	chr3	155008018	155008890	-	ENSG00000240045.1	ENST00000489090.1	RP11-451G4.2	RP11-451G4.2-001	NA	NA	NA	inter
CUST_15957_PI429285431	1.3041315	A	1.0656942	A	1.17971412506876	0	lncRNA	17654-1_{1..495}	lnc-ZFP64-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP64-4:5	chr20	 51228249	 51228743	-	lnc-ZFP64-4	lnc-ZFP64-4:5	XLOC_013798	linc-ZFP64-6	NA	NA	NA	inter
CUST_24130_PI429285431	0.8940072	A	0.9116675	A	0.98783343139507	0	lncRNA	25682-1_{1..791}	lnc-SLAMF7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLAMF7-2:1	chr1	160653389	160654179	+	lnc-SLAMF7-2	lnc-SLAMF7-2:1	ENSG00000228863.1	RP11-404F10.2	CD48	NA	chr1:160648536-160663612	inner
CUST_9623_PI429285431	3.7523832	P	4.3728333	P	0.650467959459563	0	lncRNA	11139-1_{1..628}	lnc-CIR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CIR1-1:1	chr2	175198285	175198912	-	lnc-CIR1-1	lnc-CIR1-1:1	XLOC_002399	linc-OLA1	SP9	NA	chr2:175199821-175202268	inter
CUST_8596_PI429285431	1.7954941	A	0.92083997	A	1.8335684561837	0	lncRNA	10152-1_{1..2288}	lnc-ZNF177-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF177-1:1	chr19	  9636433	  9638720	+	lnc-ZNF177-1	lnc-ZNF177-1:1	ENSG00000244781	ENST00000500679	ZNF426	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50chr19:9638667-9647304"	NA	inter
CUST_44710_PI429285431	9.954889	P	10.34289	P	0.764187730687828	0	lncRNA	49265-1_{1..1236}	"gi|399124811|ref|NR_073072.1| Homo sapiens nurim (nuclear envelope membrane protein) (NRM), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|399124811|ref|NR_073072.1| Homo sapiens nurim (nuclear envelope membrane protein) (NRM), transcript variant 6, non-coding RNA"	NT_167248.1	  1948757	  1949992	-	11270	NR_073072.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001288	4.476059	P	4.3615036	P	1.08264135302131	0	lncRNA	TCONS_00000918	NA	NA	NA	NA	XLOC_000160	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000160), lincRNA [TCONS_00000918]"	chr1:41898933-41930229	hs|1p34.2	Agilent_HUMAN_G3V2	TCONS_00000918	TCONS_00000918	chr1	 41898933	 41930229	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14126_PI429285431	2.5914073	A	2.983159	A	0.762203585555628	0	lncRNA	15776-1_{1..534}	lnc-ENAH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-ENAH-1:1	chr1	225923815	225924348	-	lnc-ENAH-1	lnc-ENAH-1:1	XLOC_001231	linc-ENAH	NA	NA	NA	inter
CUST_9428_PI429285431	1.2514834	A	0.9003371	A	1.27557373777784	0	lncRNA	10934-1_{1..749}	lnc-NGLY1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NGLY1-1:8	chr3	 25904776	 25905524	-	lnc-NGLY1-1	lnc-NGLY1-1:8	XLOC_003069	linc-NGLY1-1	NA	NA	NA	inter
CUST_43860_PI429285431	9.431178	P	9.513843	P	0.944311666928908	0	lncRNA	48581-1_{1..968}	"gi|363543311|ref|NR_045631.1| Homo sapiens NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) (NFU1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|363543311|ref|NR_045631.1| Homo sapiens NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) (NFU1), transcript variant 4, non-coding RNA"	Chr2	 69623245	 69624212	-	27247	NR_045631.1	NA	NA	NA	NA	NA	inter
CUST_22138_PI429285431	2.9141128	A	2.8812733	A	1.02302365189685	0	lncRNA	23740-1_{1..3000}	lnc-EIF2AK4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EIF2AK4-4:1	chr15	 40074772	 40077771	+	lnc-EIF2AK4-4	lnc-EIF2AK4-4:1	ENSG00000261136.1	RP11-37C7.3	FSIP1	NA	chr15:40064772-40075039	inner
CUST_31102_PI429285431	2.632463	A	2.721645	A	0.940055604394242	0	lncRNA	32893-1_{1..250}	n337384|DQ655972|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393085|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393085|-1.2310500|-0.1687674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337384|DQ655972|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393085|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393085|-1.2310500|-0.1687674	chr21	 34696781	 34697030	-	NA	NA	NA	NA	IFNAR1	"hg19_refFlat_IFNAR1:range=chr21:34697361-347278555'pad=0,hg19_refFlat_IFNAR1:range=chr21:34697361-347278555'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr21:34697214-34717918"	NA	inner
LNCA_21_P0013830	9.4273405	P	9.289417	P	1.1003202625018	0	lncRNA	TCONS_l2_00030590	NA	NA	NA	NA	XLOC_l2_015812	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015812), lincRNA [TCONS_l2_00030590]"	chrX:120152244-120152185	hs|Xq24	Agilent_HUMAN_G3V2	TCONS_l2_00030590	TCONS_l2_00030590	chrX	120152185	120152244	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6175_PI429285431	1.5836302	A	1.2368662	A	1.27170496075257	0	lncRNA	6099-1_{1..545}	"transcript_id ""ENST00000565127.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565127.1"" | genecode_v17"	chr18	 45027543	 45028087	+	ENSG00000261307.1	ENST00000565127.1	RP11-157P23.2	RP11-157P23.2-001	NA	NA	NA	inter
CUST_15416_PI429285431	1.9246978	A	0.88453543	A	2.05645908716559	0	lncRNA	17103-1_{1..3000}	lnc-NCOA3-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCOA3-9:1	chr20	 46700066	 46703065	+	lnc-NCOA3-9	lnc-NCOA3-9:1	XLOC_013547	linc-ARFGEF2-8	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10"	NA	inter
CUST_37588_PI429285431	5.792384	P	5.8805118	P	0.94074276886791	0	lncRNA	38689-1_{1..1604}	n346065|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1615|NULL|-1.3345400|-0.2314517	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346065|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1615|NULL|-1.3345400|-0.2314517	chr8	  8097135	  8098738	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
LNCA_21_P0009484	5.46836	P	5.884919	P	0.749209448988965	0	lncRNA	TCONS_00026338	NA	NA	NA	NA	XLOC_012685	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012685), lincRNA [TCONS_00026338]"	chr18:53696136-53696195	hs|18q21.2	Agilent_HUMAN_G3V2	TCONS_00026338	TCONS_00026338	chr18	 53696136	 53696195	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17769_PI429285431	1.5505109	A	3.0384552	A	0.356520193713191	0	lncRNA	19501-1_{1..376}	lnc-PIK3R1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIK3R1-1:1	chr5	 67501483	 67501858	+	lnc-PIK3R1-1	lnc-PIK3R1-1:1	XLOC_004412	linc-PIK3R1-1	PIK3R1	NA	chr5:67511584-67511722	inter
CUST_42259_PI429285431	12.825464	P	12.918884	P	0.937298188783651	0	lncRNA	44689-1_{1..152}	ENST00000365304 ncrna:rRNA chromosome:GRCh37:2:133010727:133010878:-1 gene:ENSG00000202174 gene_biotype:rRNA transcript_biotype:rRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365304 ncrna:rRNA chromosome:GRCh37:2:133010727:133010878:-1 gene:ENSG00000202174 gene_biotype:rRNA transcript_biotype:rRNA	chr2	133010727	133010878	-	ENSG00000202174	ENST00000365304	NA	NA	NA	NA	NA	inter
CUST_43542_PI429285431	3.4129684	P	3.91882	P	0.704244550466919	0	lncRNA	48323-1_{1..3000}	"gi|388490241|ref|NR_049774.1| Homo sapiens KIAA1324 (KIAA1324), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388490241|ref|NR_049774.1| Homo sapiens KIAA1324 (KIAA1324), transcript variant 5, non-coding RNA"	Chr1	109729171	109732170	+	57535	NR_049774.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60"	NA	inter
CUST_10704_PI429285431	0.88518	A	0.91094166	A	0.982301862742923	0	lncRNA	12240-1_{1..1360}	lnc-SLC35G4-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC35G4-1:6	chr18	 11506756	 11508115	+	lnc-SLC35G4-1	lnc-SLC35G4-1:6	XLOC_012626	linc-GNAL-1	NA	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30"	NA	inter
CUST_46528_PI429285431	7.8263826	P	8.58847	P	0.589642573874315	0	lncRNA	50718-1_{1..3000}	"gi|299890883|ref|NR_033936.1| Homo sapiens golgin A2 pseudogene (LOC727849), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|299890883|ref|NR_033936.1| Homo sapiens golgin A2 pseudogene (LOC727849), non-coding RNA"	Chr15	 82763613	 82766612	-	80154	NR_033936.2	NA	NA	NA	"hg19_refFlat_DNM1:range=chr9:130965750-1310154015'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310154015'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
CUST_22389_PI429285431	1.1491919	A	0.91906524	A	1.1729379216492	0	lncRNA	23979-1_{1..683}	lnc-RP11-351M8.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-351M8.1.1-1:1	chr15	 81241037	 81241719	-	lnc-RP11-351M8.1.1-1	lnc-RP11-351M8.1.1-1:1	ENSG00000259546.1	RP11-351M8.2	KIAA1199	"hg19_refFlat_KIAA1199:range=chr15:81166221-812412655'pad=0,hg19_refFlat_KIAA1199:range=chr15:81166221-812412655'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70chr15:81231037-81243999"	NA	inner
LNCA_21_P0004339	1.9980701	A	3.641379	P	0.320121415784802	0	lncRNA	TCONS_00010177	NA	NA	NA	NA	XLOC_004640	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004640), lincRNA [TCONS_00010177]"	chr5:172897715-172897774	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_00010177	TCONS_00010177	chr5	172897715	172897774	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002812	0.87582767	A	0.8811103	A	0.996345055538813	0	lncRNA	ENST00000462382	NA	NA	NA	NA	XLOC_002941	NA	ENST00000462382	NA	NA	"BROAD Institute lincRNA (XLOC_002941), lincRNA [TCONS_00005673]"	chr3:181859861-181859920	hs|3q26.33	Agilent_HUMAN_G3V2	ENST00000462382	ENST00000462382	chr3	181859861	181859920	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10059_PI429285431	1.0767102	A	1.2250546	A	0.902285308302403	0	lncRNA	11584-1_{1..286}	lnc-HFM1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HFM1-1:2	chr1	 91956561	 91956846	-	lnc-HFM1-1	lnc-HFM1-1:2	XLOC_000916	linc-HFM1-1	CDC7	NA	chr1:91966404-91966630	inter
CUST_35661_PI429285431	0.8948735	A	0.9010376	A	0.995736486155761	0	lncRNA	37082-1_{1..709}	n342820|AF086203|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5323|NULL|-1.0184500|-0.1733381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342820|AF086203|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5323|NULL|-1.0184500|-0.1733381	chr7	106130171	106130879	+	NA	NA	NA	NA	FLJ36031	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70chr7:106297211-106301634"	NA	inner
CUST_18719_PI429285431	0.8989005	A	0.89310014	A	1.00402859624557	0	lncRNA	20417-1_{1..510}	lnc-GLYATL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLYATL1-1:1	chr11	 58660135	 58660644	+	lnc-GLYATL1-1	lnc-GLYATL1-1:1	ENSG00000254717	RP11-780O24.1	NA	NA	NA	inter
LNCA_21_P0013351	1.8665197	A	0.8778084	A	1.98441160587275	0	lncRNA	TCONS_l2_00026920	NA	NA	NA	NA	XLOC_l2_014024	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014024), lincRNA [TCONS_l2_00026920]"	chr7:138914969-138912580	hs|7q34	Agilent_HUMAN_G3V2	TCONS_l2_00026920	TCONS_l2_00026920	chr7	138912580	138914969	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29753_PI429285431	4.096349	P	3.1943967	P	1.86859291123239	0	lncRNA	31515-1_{1..401}	n333436|BC015965|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000088870|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000088870|1.6665700|-0.4240974	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333436|BC015965|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000088870|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000088870|1.6665700|-0.4240974	chr8	 33342700	 33343100	+	NA	NA	NA	NA	MAK16	NA	chr8:33342685-33356646	inner
CUST_27453_PI429285431	0.89743537	A	0.9013475	A	0.997291991408811	0	lncRNA	29023-1_{1..1841}	n324629|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280614|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280614|-1.1801600|-0.4539801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324629|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280614|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280614|-1.1801600|-0.4539801	chr5	 70707368	 70709208	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003769	0.87746084	A	0.87881505	A	0.999061773566525	0	lncRNA	TCONS_00008572	NA	NA	NA	NA	XLOC_004067	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004067), lincRNA [TCONS_00008572]"	chr4:128016306-128015620	hs|4q28.1	Agilent_HUMAN_G3V2	TCONS_00008572	TCONS_00008572	chr4	128015620	128016306	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010648	2.045246	A	2.8305879	A	0.580214437606196	0	lncRNA	TCONS_l2_00001492	NA	NA	NA	NA	XLOC_l2_001086	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001086), lincRNA [TCONS_l2_00001492]"	NA	NA	Agilent_HUMAN_G3V2	TCONS_l2_00001492	TCONS_l2_00001492	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36191_PI429285431	6.3358064	P	6.494331	P	0.895940853827406	0	lncRNA	37454-1_{1..3000}	n344743|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_292|NULL|-1.3177700|-0.3053820	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344743|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_292|NULL|-1.3177700|-0.3053820	chr3	106528685	106531684	-	NA	NA	NA	NA	NA	"hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40"	NA	inter
CUST_1384_PI429285431	1.189336	A	0.96130127	A	1.17123837610272	0	lncRNA	1372-1_{1..782}	"transcript_id ""ENST00000498832.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000498832.1"" | genecode_v17"	chr3	 73857752	 73858533	+	ENSG00000242741.1	ENST00000498832.1	RP11-20B7.1	RP11-20B7.1-001	NA	NA	NA	inter
CUST_48508_PI429285431	0.892905	A	1.0906115	A	0.871935606938928	0	lncRNA	52361-1_{1..2223}	hg19_lincRNAsTranscripts_TCONS_l2_00014788 range=chr2:111964707-112252664 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014788 range=chr2:111964707-112252664 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	111964707	111966929	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002437	1.7587372	A	0.87999994	A	1.8387651905069	0	lncRNA	TCONS_00005144	NA	NA	NA	NA	XLOC_002085	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002085), lincRNA [TCONS_00005144]"	chr2:46726879-46726820	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00005144	TCONS_00005144	chr2	 46726820	 46726879	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46073_PI429285431	5.621299	P	6.0690384	P	0.733190805935664	0	lncRNA	50345-1_{1..3000}	"gi|296010924|ref|NR_033659.1| Homo sapiens signal transducer and activator of transcription 6, interleukin-4 induced (STAT6), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|296010924|ref|NR_033659.1| Homo sapiens signal transducer and activator of transcription 6, interleukin-4 induced (STAT6), transcript variant 6, non-coding RNA"	Chr12	 57489187	 57492186	-	6778	NR_033659.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004976	4.7713695	P	5.137712	P	0.775746667896659	0	lncRNA	TCONS_00012027	NA	NA	NA	NA	XLOC_005558	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005558), lincRNA [TCONS_00012027]"	chr6:170345603-170345662	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012027	TCONS_00012027	chr6	170345603	170345662	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29182_PI429285431	4.4411154	P	4.366662	P	1.0529620201767	0	lncRNA	30927-1_{1..608}	n326695|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006252|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006252|-1.0194400|-0.1473180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326695|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006252|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006252|-1.0194400|-0.1473180	chr1	 17050284	 17050891	-	NA	NA	NA	NA	LOC729587	NA	chr1:17060447-17060956	inter
CUST_38041_PI429285431	1.0761814	A	0.9231826	A	1.11187823268241	0	lncRNA	39122-2_{3001..4623}	n377615|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029998||0.0224067|-0.1882768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377615|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029998||0.0224067|-0.1882768	chr6	  1578418	  1580040	+	NA	NA	NA	NA	NA	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
CUST_16440_PI429285431	1.3168019	A	0.93087053	A	1.30670309164563	0	lncRNA	18139-1_{1..283}	lnc-NTSR2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTSR2-3:1	chr2	 12805557	 12805839	-	lnc-NTSR2-3	lnc-NTSR2-3:1	XLOC_001990	linc-NTSR2-4	NA	NA	NA	inter
CUST_48041_PI429285431	6.718757	P	6.4864044	P	1.1747490491401	0	lncRNA	51921-1_{1..818}	"gi|310118213|ref|XR_110629.1| PREDICTED: Homo sapiens uncharacterized LOC100128374 (LOC100128374), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118213|ref|XR_110629.1| PREDICTED: Homo sapiens uncharacterized LOC100128374 (LOC100128374), misc_RNA"	NA	NA	NA	NA	NA	XR_110629.1	NA	NA	NA	NA	NA	Unknown
CUST_8860_PI429285431	0.9184617	A	1.7372738	A	0.566908537084233	0	lncRNA	10399-1_{1..2289}	lnc-RP11-712L6.5.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-712L6.5.1-2:1	chr11	126225337	126227625	-	lnc-RP11-712L6.5.1-2	lnc-RP11-712L6.5.1-2:1	ENSG00000247445	AP001318.3	ST3GAL4	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_EFCAB5:range=chr17:28270646-284007085'pad=0,hg19_refFlat_EFCAB5:range=chr17:28270646-284007085'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10chr11:126226096-126235482"	NA	inter
CUST_11369_PI429285431	4.8114223	P	6.0642414	P	0.419627432474685	0	lncRNA	12933-1_{1..281}	lnc-ANKRA2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRA2-3:2	chr5	 72570511	 72570791	-	lnc-ANKRA2-3	lnc-ANKRA2-3:2	XLOC_004881	linc-ZNF366-1	NA	NA	NA	inter
CUST_7133_PI429285431	1.4754021	A	0.90574	A	1.48417591449833	0	lncRNA	7069-2_{3001..3168}	"transcript_id ""ENST00000450591.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450591.1"" | genecode_v17"	chrY	  6277285	  6277452	-	ENSG00000212856.5	ENST00000450591.1	TTTY2B	TTTY2B-001	NA	NA	NA	inter
CUST_38658_PI429285431	1.4699608	A	1.6745087	A	0.867810591948447	0	lncRNA	39659-2_{3001..3334}	n383920|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xml.1||0.1006320|-0.2388136	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383920|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xml.1||0.1006320|-0.2388136	chr20	 43292218	 43292551	-	NA	NA	NA	NA	ADA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr20:43279218-43280376"	NA	inner
CUST_50646_PI429285431	1.6327132	A	2.2349236	A	0.658743898858799	0	lncRNA	54326-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00002970 range=chr10:37524718-37540653 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002970 range=chr10:37524718-37540653 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 37527718	 37530717	+	NA	NA	NA	NA	ANKRD30A	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80chr10:37514718-37521495"	NA	inter
CUST_49162_PI429285431	0.9138968	A	0.9291398	A	0.989489977866601	0	lncRNA	52988-1_{1..550}	hg19_lincRNAsTranscripts_TCONS_l2_00020770 range=chr4:135855418-135868307 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020770 range=chr4:135855418-135868307 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	135855418	135855967	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31581_PI429285431	0.91190636	A	0.92746234	A	0.989275340001631	0	lncRNA	33338-1_{1..2523}	n338085|AF237652|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|472|NULL|4.5015700|-0.1709249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338085|AF237652|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|472|NULL|4.5015700|-0.1709249	chr15	 84322837	 84325359	+	NA	NA	NA	NA	ADAMTSL3	NA	chr15:84322838-84621529	inner
LNCA_21_P0008172	0.90372336	A	0.9258182	A	0.984801701795914	0	lncRNA	TCONS_00022035	NA	NA	NA	NA	XLOC_010634	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010634), lincRNA [TCONS_00022035]"	chr13:61190584-61190525	hs|13q21.2	Agilent_HUMAN_G3V2	TCONS_00022035	TCONS_00022035	chr13	 61190525	 61190584	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1328_PI429285431	0.926465	A	1.2822572	A	0.781440427607704	0	lncRNA	1317-1_{1..755}	"transcript_id ""ENST00000356047.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000356047.3"" | genecode_v17"	chr3	 28038701	 28039455	-	ENSG00000235493.1	ENST00000356047.3	AC092415.1	AC092415.1-002	NA	"hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20"	NA	inter
CUST_11192_PI429285431	7.820652	P	7.7322993	P	1.06315555542966	0	lncRNA	12750-1_{1..1581}	lnc-CEP68-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEP68-1:1	chr2	 65264744	 65266324	+	lnc-CEP68-1	lnc-CEP68-1:1	XLOC_001500	linc-CEP68	NA	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-65.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-23.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40"	NA	inter
LNCA_21_P0007426	0.898208	A	3.4689145	P	0.168321748333883	0	lncRNA	THC2659036	NA	NA	NA	NA	XLOC_009037	NA	NA	THC2659036	NA	"BROAD Institute lincRNA (XLOC_009037), lincRNA [TCONS_00019831]"	chr11:004431694-004431753	hs|11p15.4	Agilent_HUMAN_G3V2	THC2659036	THC2659036	chr11	  4431694	  4431753	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8835_PI429285431	1.056931	A	1.2251945	A	0.889913180854287	0	lncRNA	10375-1_{1..3000}	lnc-ASXL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ASXL1-1:1	chr20	 30942166	 30945165	+	lnc-ASXL1-1	lnc-ASXL1-1:1	ENSG00000249039	XLOC_013506	ASXL1	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.36;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30chr20:30946147-30955985"	NA	inter
CUST_14481_PI429285431	1.6565872	A	0.97244066	A	1.60675118903012	0	lncRNA	16146-1_{1..481}	lnc-RP11-22D3.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-22D3.1.1-1:1	chr16	 49203727	 49204207	+	lnc-RP11-22D3.1.1-1	lnc-RP11-22D3.1.1-1:1	XLOC_011713	linc-C16orf78-2	NA	NA	NA	inter
CUST_22082_PI429285431	7.654942	P	7.666863	P	0.991771037271965	0	lncRNA	23688-1_{1..3000}	lnc-C2orf76-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf76-2:1	chr2	120005890	120008889	-	lnc-C2orf76-2	lnc-C2orf76-2:1	ENSG00000229867.1	STEAP3-AS1	STEAP3	"hg19_refFlat_STEAP3:range=chr2:120003073-1200209145'pad=0,hg19_refFlat_STEAP3:range=chr2:120003073-1200209145'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.60;hg19_refFlat_STEAP3:range=chr2:119988589-1200209145'pad=0,hg19_refFlat_STEAP3:range=chr2:119988589-1200209145'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70chr2:119995890-120016647"	NA	inner
CUST_21029_PI429285431	4.5294085	P	4.791839	P	0.83368223604116	0	lncRNA	22657-1_{1..244}	lnc-C10orf31-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf31-5:1	chr10	 11052870	 11053113	-	lnc-C10orf31-5	lnc-C10orf31-5:1	ENSG00000228027.1	RP1-251M9.3	CELF2	NA	chr10:11047259-11063082	inner
CUST_21725_PI429285431	5.971469	P	6.0685434	P	0.934926982183295	0	lncRNA	23335-1_{1..647}	lnc-RPRML-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPRML-3:3	chr17	 45177201	 45177847	-	lnc-RPRML-3	lnc-RPRML-3:3	ENSG00000262879.1	RP11-156P1.3	NA	NA	NA	inter
CUST_32935_PI429285431	5.316711	P	6.572179	P	0.418857670846873	0	lncRNA	34556-1_{1..1856}	n339606|AK056943|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2050|NULL|-1.0256100|-0.2316875	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339606|AK056943|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2050|NULL|-1.0256100|-0.2316875	chr20	 23128722	 23130577	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32496_PI429285431	5.1565776	P	5.6952376	P	0.688410019297319	0	lncRNA	34163-1_{1..1001}	n339100|AK025384|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1530|NULL|-0.8165220|-0.2054503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339100|AK025384|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1530|NULL|-0.8165220|-0.2054503	chr16	 17320882	 17321882	-	NA	NA	NA	NA	XYLT1	NA	chr16:17310882-17331857	inner
LNCA_21_P0002490	7.6593137	P	7.1952515	P	1.37942039253738	0	lncRNA	TCONS_00004378	NA	NA	NA	NA	XLOC_002263	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002263), lincRNA [TCONS_00004378]"	chr2:110977033-110976974	hs|2q13	Agilent_HUMAN_G3V2	TCONS_00004378	TCONS_00004378	chr2	110976974	110977033	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31437_PI429285431	1.9656473	A	1.6593757	A	1.23650802249521	0	lncRNA	33206-1_{1..1677}	n337905|AK129712|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|288|NULL|-1.2864600|-0.2793721	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337905|AK129712|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|288|NULL|-1.2864600|-0.2793721	chr15	 67401664	 67403340	+	NA	NA	NA	NA	SMAD3	NA	chr15:67391664-67413023	inner
LNCA_21_P0003040	1.6714109	A	2.5928059	A	0.527998230592515	0	lncRNA	TCONS_00006262	NA	NA	NA	NA	XLOC_002865	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002865), lincRNA [TCONS_00006262]"	chr3:148944026-148944085	hs|3q25.1	Agilent_HUMAN_G3V2	TCONS_00006262	TCONS_00006262	chr3	148944026	148944085	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005079	6.416812	P	6.480657	P	0.956710939501471	0	lncRNA	TCONS_00012350	NA	NA	NA	NA	XLOC_005905	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005905), lincRNA [TCONS_00012350]"	chr6:161216485-161216426	hs|6q26	Agilent_HUMAN_G3V2	TCONS_00012350	TCONS_00012350	chr6	161216426	161216485	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16712_PI429285431	2.5749857	A	1.9583119	A	1.53333592615351	0	lncRNA	18418-1_{1..2463}	lnc-ALDH1A3-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ALDH1A3-1:9	chr15	101407563	101410025	+	lnc-ALDH1A3-1	lnc-ALDH1A3-1:9	XLOC_011388	linc-ALDH1A3-1	NA	NA	NA	inter
CUST_38624_PI429285431	0.87676775	A	0.8832687	A	0.995504022141135	0	lncRNA	39628-1_{1..1343}	n383799|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vbn.1||-1.1159900|-0.2695753	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383799|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vbn.1||-1.1159900|-0.2695753	chr2	207128707	207130049	+	NA	NA	NA	NA	ZDBF2	NA	chr2:207118707-207140050	inter
CUST_49936_PI429285431	1.0541224	A	0.89583755	A	1.11595963896467	0	lncRNA	53686-1_{1..979}	hg19_lincRNAsTranscripts_TCONS_l2_00026846 range=chr7:112594729-112620670 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026846 range=chr7:112594729-112620670 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	112594729	112595707	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39095_PI429285431	1.9914382	A	2.0702193	A	0.946857286916341	0	lncRNA	40071-1_{1..466}	n385647|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azp.1||-0.8240090|-0.2919564	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385647|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azp.1||-0.8240090|-0.2919564	chr9	102117690	102118155	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_908_PI429285431	0.9134126	A	1.3618748	A	0.732823564372249	0	lncRNA	897-1_{1..755}	"transcript_id ""ENST00000594228.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594228.1"" | genecode_v17"	chr2	 65677651	 65678405	-	ENSG00000234255.4	ENST00000594228.1	AC012370.3	AC012370.3-004	NA	NA	NA	inter
LNCA_21_P0004257	2.105344	A	2.463593	A	0.780110826380506	0	lncRNA	TCONS_00009982	NA	NA	NA	NA	XLOC_004408	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004408), lincRNA [TCONS_00009982]"	chr5:65622472-65622531	hs|5q12.3	Agilent_HUMAN_G3V2	TCONS_00009982	TCONS_00009982	chr5	 65622472	 65622531	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013906	1.5767051	A	1.1073959	A	1.3844464003443	0	lncRNA	ENST00000447937	NA	NA	NA	NA	XLOC_l2_015950	NA	ENST00000447937	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015950), lincRNA [TCONS_l2_00031049]"	chrY:21210726-21210667	hs|Yq11.222	Agilent_HUMAN_G3V2	ENST00000447937	ENST00000447937	chrY	 21210667	 21210726	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37868_PI429285431	5.1647987	P	5.2404833	P	0.948891737869365	0	lncRNA	38960-1_{1..725}	n346403|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1953|NULL|-1.5593500|-0.1312704	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346403|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1953|NULL|-1.5593500|-0.1312704	chr22	 21834075	 21834799	-	NA	NA	NA	NA	TMEM191C	NA	chr22:21824075-21824224	inter
CUST_33604_PI429285431	8.880498	P	8.695036	P	1.13718107897609	0	lncRNA	35169-1_{1..2231}	n340361|AK095831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2822|NULL|-1.1946200|-0.3603806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n340361|AK095831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2822|NULL|-1.1946200|-0.3603806	chr5	  9548190	  9550420	+	NA	NA	NA	NA	SEMA5A	NA	chr5:9538190-9546233	inter
LNCA_21_P0003689	6.6874847	P	7.278964	P	0.663662057140367	0	lncRNA	TCONS_00008357	NA	NA	NA	NA	XLOC_003804	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003804), lincRNA [TCONS_00008357]"	chr4:184688394-184688453	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00008357	TCONS_00008357	chr4	184688394	184688453	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3554_PI429285431	7.11531	P	7.3857403	P	0.829072228829523	0	lncRNA	3524-1_{1..1887}	"transcript_id ""ENST00000444184.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444184.1"" | genecode_v17"	chr9	132250824	132252710	+	ENSG00000204054.6	ENST00000444184.1	RP11-492E3.1	RP11-492E3.1-002	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50"	NA	inter
CUST_8327_PI429285431	0.8941511	A	0.90183496	A	0.994688112340663	0	lncRNA	9910-1_{1..3000}	lnc-GAS2L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GAS2L2-1:1	chr17	 34010123	 34013122	-	lnc-GAS2L2-1	lnc-GAS2L2-1:1	ENSG00000245181	ENST00000499128	AP2B1	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90chr17:34000123-34021922"	NA	inner
LNCA_21_P0005136	4.481857	P	4.4513006	P	1.02140597242584	0	lncRNA	THC2784169	NA	NA	NA	NA	XLOC_005479	NA	NA	THC2784169	NA	"BROAD Institute lincRNA (XLOC_005479), lincRNA [TCONS_00012608]"	chr6:138146634-138146693	hs|6q23.3	Agilent_HUMAN_G3V2	THC2784169	THC2784169	chr6	138146634	138146693	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48760_PI429285431	1.0701298	A	0.87539184	A	1.14451626061244	0	lncRNA	52597-1_{1..524}	hg19_lincRNAsTranscripts_TCONS_l2_00014955 range=chr2:155792213-155801648 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014955 range=chr2:155792213-155801648 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	155792213	155792736	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47956_PI429285431	3.706174	P	3.737772	P	0.97833604408031	0	lncRNA	51847-1_{1..851}	"gi|410172582|ref|XR_171867.1| PREDICTED: Homo sapiens CYP17A1 antisense RNA 1 (CYP17A1-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410172582|ref|XR_171867.1| PREDICTED: Homo sapiens CYP17A1 antisense RNA 1 (CYP17A1-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_171867.1	NA	NA	NA	"hg19_refFlat_CYP17A1:range=chr10:104590459-1045971185'pad=0,hg19_refFlat_CYP17A1:range=chr10:104590459-1045971185'pad=0 3'pad=0 strand=- repeatMasking=none,-96.40"	NA	Unknown
CUST_21080_PI429285431	0.8918777	A	0.9046217	A	0.991205432780253	0	lncRNA	22706-1_{1..635}	lnc-TMPRSS15-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMPRSS15-10:1	chr21	 22598969	 22599603	-	lnc-TMPRSS15-10	lnc-TMPRSS15-10:1	ENSG00000226771.1	AP001136.2	NCAM2	NA	chr21:22588969-22609150	inner
CUST_39638_PI429285431	7.888776	P	8.13561	P	0.842743792074916	0	lncRNA	40577-1_{1..385}	n405214|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000048980||-1.2783500|-0.4532055	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405214|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000048980||-1.2783500|-0.4532055	chr10	 81380445	 81380829	-	NA	NA	NA	NA	SFTPA1	NA	chr10:81370445-81375199	inter
CUST_18371_PI429285431	6.8668127	P	7.216491	P	0.784759068240498	0	lncRNA	20099-1_{1..824}	lnc-WRN-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WRN-3:1	chr8	 31201647	 31202470	+	lnc-WRN-3	lnc-WRN-3:1	ENSG00000254095	RP11-566H8.2	NA	NA	NA	inter
CUST_4414_PI429285431	1.9945914	A	0.87939453	A	2.16624567652046	0	lncRNA	4364-1_{1..571}	"transcript_id ""ENST00000602695.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602695.1"" | genecode_v17"	chr12	112335140	112335710	+	ENSG00000270018.1	ENST00000602695.1	RP3-462E2.5	RP3-462E2.5-001	MAPKAPK5	NA	chr12:112325140-112331228	inter
CUST_14114_PI429285431	2.8774135	A	2.834024	P	1.03053213998512	0	lncRNA	15761-1_{1..1113}	lnc-CTR9-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CTR9-3:1	chr11	 10899928	 10901040	+	lnc-CTR9-3	lnc-CTR9-3:1	XLOC_009065	linc-USP47-3	NA	NA	NA	inter
LNCA_21_P0005001	0.917586	A	0.87912023	A	1.02702106303822	0	lncRNA	TCONS_00012086	NA	NA	NA	NA	XLOC_005615	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005615), lincRNA [TCONS_00012086]"	chr6:14292208-14292149	hs|6p23	Agilent_HUMAN_G3V2	TCONS_00012086	TCONS_00012086	chr6	 14292149	 14292208	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011971	5.215412	P	5.6874814	P	0.720929754992333	0	lncRNA	TCONS_l2_00014935	NA	NA	NA	NA	XLOC_l2_008289	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008289), lincRNA [TCONS_l2_00014935]"	chr2:139659396-139659337	hs|2q22.1	Agilent_HUMAN_G3V2	TCONS_l2_00014935	TCONS_l2_00014935	chr2	139659337	139659396	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26204_PI429285431	0.9036569	A	0.9136105	A	0.993124435820482	0	lncRNA	27715-1_{1..384}	lnc-LRCH1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRCH1-4:3	chr13	 47428074	 47428457	+	lnc-LRCH1-4	lnc-LRCH1-4:3	ENSG00000224517.1	HTR2A-AS1	HTR2A	NA	chr13:47418074-47438382	inner
CUST_34786_PI429285431	0.88089466	A	0.87869227	A	1.00152774623604	0	lncRNA	36223-1_{1..1780}	n341693|BC039548|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4164|NULL|-1.1274100|-0.2470194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341693|BC039548|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4164|NULL|-1.1274100|-0.2470194	chr9	 71155950	 71157729	+	NA	NA	NA	NA	PGM5	NA	chr9:71145950-71145977	inter
CUST_11631_PI429285431	1.7279348	A	1.4089992	A	1.24740988794237	0	lncRNA	13208-1_{1..546}	lnc-WDR60-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR60-4:1	chr7	158801241	158801786	+	lnc-WDR60-4	lnc-WDR60-4:1	XLOC_006322	ENSG00000231419	NA	NA	NA	inter
CUST_20852_PI429285431	3.2597728	P	3.1607883	P	1.07101931633234	0	lncRNA	22483-1_{1..370}	lnc-FITM2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FITM2-1:2	chr20	 42980508	 42980877	-	lnc-FITM2-1	lnc-FITM2-1:2	ENSG00000226812.1	RP5-881L22.5	HNF4A	"hg19_refFlat_R3HDML:range=chr20:42965798-429794325'pad=0,hg19_refFlat_R3HDML:range=chr20:42965798-429794325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10chr20:42984441-42990742"	NA	inter
CUST_37827_PI429285431	2.0692096	A	2.0079837	A	1.04335195082112	0	lncRNA	38920-1_{1..3000}	n346349|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1899|NULL|-1.3463700|-0.2230547	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n346349|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1899|NULL|-1.3463700|-0.2230547	chr2	 91802597	 91805596	-	NA	NA	NA	NA	LOC100506191	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30chr2:91832852-91835376"	NA	inter
CUST_11343_PI429285431	0.886234	A	0.89619833	A	0.993117049515499	0	lncRNA	12906-1_{1..3000}	lnc-MANEA-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MANEA-3:4	chr6	 94454425	 94457424	+	lnc-MANEA-3	lnc-MANEA-3:4	XLOC_005392	linc-MANEA-3	NA	NA	NA	inter
CUST_22366_PI429285431	0.87280643	A	0.87578374	A	0.997938413961542	0	lncRNA	23960-1_{1..568}	lnc-MAPK6-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAPK6-8:1	chr15	 52603100	 52603667	+	lnc-MAPK6-8	lnc-MAPK6-8:1	ENSG00000260553.1	RP11-430B1.4	MYO5A	NA	chr15:52599480-52613608	inner
CUST_47767_PI429285431	0.8951121	A	0.9071336	A	0.991701951626817	0	lncRNA	51701-1_{1..3000}	"gi|385137083|ref|NR_047621.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 51, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137083|ref|NR_047621.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 51, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047621.1	NA	NA	NA	NA	NA	inter
CUST_41854_PI429285431	2.035191	A	2.80403	A	0.586889580424436	0	lncRNA	43506-1_{1..88}	ENST00000516924 ncrna:miRNA chromosome:GRCh37:3:189861445:189861532:1 gene:ENSG00000252733 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516924 ncrna:miRNA chromosome:GRCh37:3:189861445:189861532:1 gene:ENSG00000252733 gene_biotype:miRNA transcript_biotype:miRNA	chr3	189861445	189861532	+	ENSG00000252733	ENST00000516924	NA	NA	NA	NA	NA	inter
LNCA_21_P0002257	3.428344	P	4.3824577	P	0.516158587249651	0	lncRNA	TCONS_00003770	NA	NA	NA	NA	XLOC_001574	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001574), lincRNA [TCONS_00003770]"	chr2:95925460-95925519	hs|2q11.1	Agilent_HUMAN_G3V2	TCONS_00003770	TCONS_00003770	chr2	 95925460	 95925519	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43046_PI429285431	8.633385	P	8.354572	P	1.21319629734494	0	lncRNA	46708-1_{1..140}	ENST00000410828 ncrna:snRNA chromosome:GRCh37:9:36267780:36267919:1 gene:ENSG00000222760 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410828 ncrna:snRNA chromosome:GRCh37:9:36267780:36267919:1 gene:ENSG00000222760 gene_biotype:snRNA transcript_biotype:snRNA	chr9	 36267780	 36267919	+	ENSG00000222760	ENST00000410828	NA	NA	GNE	NA	chr9:36257780-36277053	inner
CUST_43551_PI429285431	9.735336	P	10.032833	P	0.813662834698076	0	lncRNA	48327-2_{3001..3405}	"gi|399154177|ref|NR_073071.1| Homo sapiens family with sequence similarity 40, member A (FAM40A), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|399154177|ref|NR_073071.1| Homo sapiens family with sequence similarity 40, member A (FAM40A), transcript variant 3, non-coding RNA"	Chr1	110580223	110580627	+	85369	NR_073071.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003869	0.9057421	A	0.929571	A	0.983618721813284	0	lncRNA	TCONS_00008952	NA	NA	NA	NA	XLOC_003811	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003811), lincRNA [TCONS_00008952]"	chr4:185883862-185883921	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00008952	TCONS_00008952	chr4	185883862	185883921	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9143_PI429285431	2.1414447	A	2.2644603	A	0.918266232946295	0	lncRNA	10662-1_{1..396}	lnc-DBX1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DBX1-4:1	chr11	 20692680	 20693075	-	lnc-DBX1-4	lnc-DBX1-4:1	ENSG00000254906	RP11-701I24.3	NELL1	NA	chr11:20691117-20702843	inner
LNCA_21_P0014394	4.758133	P	5.178059	P	0.747462962870764	0	lncRNA	XR_109575	XR_109575	XR_109575	NA	Hs.662829	LOC100507503	uncharacterized LOC100507503	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507503 (LOC100507503), miscRNA [XR_109575]"	chr19:16189067-16189008	hs|19p13.12	Agilent_HUMAN_G3V2	XR_109575	XR_109575	chr19	 16189008	 16189067	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16859_PI429285431	0.90884763	A	0.9300033	A	0.985442999713535	0	lncRNA	18565-1_{1..2120}	lnc-KHDRBS3-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KHDRBS3-5:4	chr8	135777966	135780085	+	lnc-KHDRBS3-5	lnc-KHDRBS3-5:4	XLOC_006934	linc-KHDRBS3-4	NA	NA	NA	inter
CUST_26511_PI429285431	1.2198817	A	1.1573079	A	1.04432720284833	0	lncRNA	28019-1_{1..444}	lnc-CHAC1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHAC1-4:2	chr15	 41319787	 41320230	+	lnc-CHAC1-4	lnc-CHAC1-4:2	ENSG00000259521.1	RP11-540O11.4	INO80	"hg19_refFlat_INO80:range=chr15:41272421-413885085'pad=0,hg19_refFlat_INO80:range=chr15:41272421-413885085'pad=0 3'pad=0 strand=- repeatMasking=none,-93.80chr15:41309787-41330091"	NA	inner
CUST_1962_PI429285431	1.6923274	A	1.6888653	A	1.00240262654615	0	lncRNA	1955-1_{1..714}	"transcript_id ""ENST00000515485.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515485.1"" | genecode_v17"	chr4	165675216	165675929	+	ENSG00000248771.1	ENST00000515485.1	RP11-294O2.2	RP11-294O2.2-002	NA	NA	NA	inter
CUST_24421_PI429285431	1.4957273	A	1.454825	A	1.02875703761463	0	lncRNA	25974-1_{1..468}	lnc-EN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EN2-1:1	chr7	155311048	155311515	+	lnc-EN2-1	lnc-EN2-1:1	ENSG00000227365.1	AC008060.5	CNPY1	NA	chr7:155301048-155321318	inner
CUST_30518_PI429285431	5.8871055	P	5.0950418	P	1.73154958328342	0	lncRNA	32298-1_{1..665}	n335675|CR615239|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000294434|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000294434|2.1296700|-0.2251051	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335675|CR615239|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000294434|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000294434|2.1296700|-0.2251051	chr3	119562109	119562773	-	NA	NA	NA	NA	GSK3B	NA	chr3:119552109-119644981	inner
CUST_51064_PI429285431	1.031749	A	2.2295778	A	0.435930847216794	0	lncRNA	54701-2_{3001..4223}	hg19_lincRNAsTranscripts_TCONS_l2_00006759 range=chr13:25588663-25596910 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006759 range=chr13:25588663-25596910 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 25591663	 25592885	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-56.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ANKRD36:range=chr2:97779477-979159045'pad=0,hg19_refFlat_ANKRD36:range=chr2:97779477-979159045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ANKRD36B:range=chr2:98123505-982061485'pad=0,hg19_refFlat_ANKRD36B:range=chr2:98123505-982061485'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-55.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70"	NA	inter
CUST_401_PI429285431	3.5012538	P	3.8333285	P	0.794393266861661	0	lncRNA	393-1_{1..776}	"transcript_id ""ENST00000444754.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444754.1"" | genecode_v17"	chr1	143361708	143362483	+	ENSG00000242569.2	ENST00000444754.1	RP11-435B5.3	RP11-435B5.3-007	NA	NA	NA	inter
CUST_917_PI429285431	0.88651085	A	0.89695346	A	0.992787867474916	0	lncRNA	907-1_{1..625}	"transcript_id ""ENST00000426260.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000426260.1"" | genecode_v17"	chr2	 67131568	 67132192	+	ENSG00000230525.1	ENST00000426260.1	AC007403.2	AC007403.2-002	NA	NA	NA	inter
CUST_7060_PI429285431	2.7684696	A	3.2622783	A	0.710147837961578	0	lncRNA	7005-1_{1..615}	"transcript_id ""ENST00000433646.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433646.1"" | genecode_v17"	chrX	 53122892	 53123506	-	ENSG00000234019.1	ENST00000433646.1	RP11-236P24.3	RP11-236P24.3-001	TSPYL2	NA	chrX:53112892-53117728	inter
CUST_48034_PI429285431	3.8041437	P	3.4988098	P	1.23570459778426	0	lncRNA	51915-1_{1..560}	"gi|410173837|ref|XR_172410.1| PREDICTED: Homo sapiens uncharacterized LOC101060528 (LOC101060528), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173837|ref|XR_172410.1| PREDICTED: Homo sapiens uncharacterized LOC101060528 (LOC101060528), misc_RNA"	NA	NA	NA	NA	NA	XR_172410.1	NA	NA	NA	NA	NA	Unknown
CUST_49298_PI429285431	0.901674	A	0.909455	A	0.994621139939977	0	lncRNA	53115-1_{1..1737}	hg19_lincRNAsTranscripts_TCONS_l2_00022780 range=chr5:7300378-7307305 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022780 range=chr5:7300378-7307305 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	  7300378	  7302114	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20"	NA	inter
CUST_37614_PI429285431	4.9570236	P	4.9395266	P	1.01220183858242	0	lncRNA	38712-1_{1..749}	n346093|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1643|NULL|-1.2967100|-0.2015389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n346093|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1643|NULL|-1.2967100|-0.2015389	chr14	 32413860	 32414608	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4957_PI429285431	4.361961	P	4.0842633	P	1.21225877769116	0	lncRNA	4901-1_{1..432}	"transcript_id ""ENST00000556466.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556466.1"" | genecode_v17"	chr14	 93357954	 93358385	+	ENSG00000258742.1	ENST00000556466.1	RP11-862G15.1	RP11-862G15.1-003	NA	NA	NA	inter
LNCA_21_P0007424	0.8832697	A	0.89506656	A	0.991856380154719	0	lncRNA	TCONS_00019808	NA	NA	NA	NA	XLOC_009608	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009608), lincRNA [TCONS_00019808]"	chr11:133562779-133523692	hs|11q25	Agilent_HUMAN_G3V2	TCONS_00019808	TCONS_00019808	chr11	133523692	133562779	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40155_PI429285431	7.947475	P	7.6886806	P	1.19647843966917	0	lncRNA	40993-1_{1..2425}	n407830|NR_027382|lncRNA|Homosapiens||RefGeneNoncode|NR_027382||3.8858200|-0.1364830	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407830|NR_027382|lncRNA|Homosapiens||RefGeneNoncode|NR_027382||3.8858200|-0.1364830	chr19	 55555691	 55558115	-	NA	NA	NA	NA	RDH13	NA	chr19:55555692-55580914	inter
CUST_48160_PI429285431	5.872911	P	5.958994	P	0.942077073506125	0	lncRNA	52025-1_{1..2161}	"gi|310112932|ref|XR_111613.1| PREDICTED: Homo sapiens uncharacterized protein FLJ40448 (FLJ40448), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310112932|ref|XR_111613.1| PREDICTED: Homo sapiens uncharacterized protein FLJ40448 (FLJ40448), misc_RNA"	NA	NA	NA	NA	NA	XR_111613.1	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-61.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60"	NA	Unknown
CUST_24030_PI429285431	0.9009517	A	1.4670519	A	0.675440129060704	0	lncRNA	25582-1_{1..332}	lnc-ARFGAP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARFGAP2-1:1	chr11	 47152259	 47152590	-	lnc-ARFGAP2-1	lnc-ARFGAP2-1:1	ENSG00000255520.1	RP11-390K5.3	C11orf49	NA	chr11:47142259-47162352	inner
CUST_47144_PI429285431	7.470518	P	7.5495996	P	0.946660085861256	0	lncRNA	51225-1_{1..2587}	"gi|225543290|ref|NR_027280.1| Homo sapiens SUMO1 activating enzyme subunit 1 (SAE1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225543290|ref|NR_027280.1| Homo sapiens SUMO1 activating enzyme subunit 1 (SAE1), transcript variant 4, non-coding RNA"	Chr19	 47634115	 47636701	+	10055	NR_027280.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002409	5.611454	P	5.713036	P	0.932010426715968	0	lncRNA	TCONS_00004162	NA	NA	NA	NA	XLOC_002005	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002005), lincRNA [TCONS_00004162]"	chr2:19562856-19562797	hs|2p24.1	Agilent_HUMAN_G3V2	TCONS_00004162	TCONS_00004162	chr2	 19562797	 19562856	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34213_PI429285431	0.8900863	A	0.8941928	A	0.997157638283947	0	lncRNA	35726-1_{1..1982}	n341072|AK058009|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3538|NULL|-0.5693150|-0.2265197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341072|AK058009|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3538|NULL|-0.5693150|-0.2265197	chr11	 76498676	 76500657	+	NA	NA	NA	NA	TSKU	NA	chr11:76494285-76509198	inner
CUST_26357_PI429285431	5.3060865	P	4.4583707	P	1.79964930737822	0	lncRNA	27864-1_{1..748}	lnc-KIAA0101-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0101-1:2	chr15	 64665355	 64666102	-	lnc-KIAA0101-1	lnc-KIAA0101-1:2	ENSG00000259316.1	CTD-2116N17.1	KIAA0101	NA	chr15:64657193-64673702	inner
CUST_14830_PI429285431	1.3186117	A	1.093598	A	1.16878834745871	0	lncRNA	16491-3_{6001..6753}	lnc-CCDC54-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC54-2:12	chr3	107010167	107010919	+	lnc-CCDC54-2	lnc-CCDC54-2:12	XLOC_002746	linc-CCDC54	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.60"	NA	inter
CUST_47372_PI429285431	0.8796	A	0.88728875	A	0.994684740861253	0	lncRNA	51420-1_{1..1215}	"gi|219277614|ref|NR_024622.1| Homo sapiens chromosome 21 open reading frame 49 (C21orf49), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219277614|ref|NR_024622.1| Homo sapiens chromosome 21 open reading frame 49 (C21orf49), transcript variant 1, non-coding RNA"	NW_003315969.1	     3022	     4236	+	54067	NR_024622.1	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	Unknown
CUST_22644_PI429285431	0.9048395	A	0.90146506	A	1.00234172112799	0	lncRNA	24230-1_{1..754}	lnc-RGS5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RGS5-1:1	chr1	163291412	163292165	-	lnc-RGS5-1	lnc-RGS5-1:1	ENSG00000232995.2	RP11-267N12.3	NUF2	NA	chr1:163291723-163301684	inner
CUST_48937_PI429285431	2.4890814	A	2.2519522	A	1.17864495618157	0	lncRNA	52779-1_{1..505}	hg19_lincRNAsTranscripts_TCONS_l2_00019570 range=chr3:149983213-150014393 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019570 range=chr3:149983213-150014393 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	149983213	149983717	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2622_PI429285431	0.9008541	A	0.90583104	A	0.996556191628805	0	lncRNA	2609-1_{1..281}	"transcript_id ""ENST00000430672.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430672.1"" | genecode_v17"	chr6	125746773	125747053	-	ENSG00000228704.1	ENST00000430672.1	RP11-138M12.1	RP11-138M12.1-001	NA	NA	NA	inter
CUST_51720_PI429285431	6.147252	P	5.7566996	P	1.31089524235834	0	lncRNA	55277-1_{1..621}	hg19_lincRNAsTranscripts_TCONS_l2_00011976 range=chr18:11629738-11640034 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011976 range=chr18:11629738-11640034 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 11629738	 11630358	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001493	2.19357	A	1.9030685	A	1.22306535760466	0	lncRNA	TCONS_00001468	NA	NA	NA	NA	XLOC_000794	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000794), lincRNA [TCONS_00001468]"	chr1:40626828-40626769	hs|1p34.2	Agilent_HUMAN_G3V2	TCONS_00001468	TCONS_00001468	chr1	 40626769	 40626828	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_988_PI429285431	0.9045305	A	0.9864804	A	0.944779849489133	0	lncRNA	978-1_{1..471}	"transcript_id ""ENST00000416008.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416008.1"" | genecode_v17"	chr2	105027659	105028129	+	ENSG00000227157.1	ENST00000416008.1	AC068535.2	AC068535.2-001	NA	NA	NA	inter
CUST_37674_PI429285431	4.762196	P	5.0324416	P	0.829178377002837	0	lncRNA	38768-1_{1..1089}	n346161|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1711|NULL|-1.5655300|-0.2354950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346161|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1711|NULL|-1.5655300|-0.2354950	chr3	 37420194	 37421282	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00"	NA	inter
CUST_47251_PI429285431	7.943523	P	7.5591493	P	1.30529301277885	0	lncRNA	51323-1_{1..978}	"gi|149274657|ref|NR_003579.1| Homo sapiens FSHD region gene 1 family, member B (FRG1B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|149274657|ref|NR_003579.1| Homo sapiens FSHD region gene 1 family, member B (FRG1B), non-coding RNA"	NA	NA	NA	NA	NA	NR_003579.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005462	2.6869526	A	2.1601598	A	1.44072281722946	0	lncRNA	TCONS_00013671	NA	NA	NA	NA	XLOC_006327	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006327), lincRNA [TCONS_00013671]"	chr7:181661-181602	hs|7p22.3	Agilent_HUMAN_G3V2	TCONS_00013671	TCONS_00013671	chr7	   181602	   181661	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38652_PI429285431	8.322802	P	8.024059	P	1.23007220161562	0	lncRNA	39655-1_{1..805}	n383901|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xij.3||-0.8436080|-0.1529605	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383901|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002xij.3||-0.8436080|-0.1529605	chr20	 37049238	 37050042	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006314	0.873407	A	0.87810993	A	0.996745484783364	0	lncRNA	TCONS_00016469	NA	NA	NA	NA	XLOC_007835	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007835), lincRNA [TCONS_00016469]"	chr9:118503794-118370458	hs|9q33.1	Agilent_HUMAN_G3V2	TCONS_00016469	TCONS_00016469	chr9	118370458	118503794	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004181	0.87295234	A	0.8777495	A	0.996680384220096	0	lncRNA	ENST00000457890	NA	NA	NA	NA	XLOC_004998	NA	ENST00000457890	NA	NA	"BROAD Institute lincRNA (XLOC_004998), lincRNA [TCONS_00009785]"	chr5:131515116-131515057	hs|5q31.1	Agilent_HUMAN_G3V2	ENST00000457890	ENST00000457890	chr5	131515057	131515116	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2922_PI429285431	3.3635607	P	3.901532	P	0.688738724357939	0	lncRNA	2903-1_{1..600}	"transcript_id ""ENST00000454957.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454957.1"" | genecode_v17"	chr7	124791380	124791979	-	ENSG00000224899.1	ENST00000454957.1	RP11-3B12.5	RP11-3B12.5-001	NA	NA	NA	inter
CUST_20496_PI429285431	1.4950318	A	1.6394771	A	0.904727168105894	0	lncRNA	22138-1_{1..1512}	lnc-ATG2B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATG2B-2:1	chr14	 96967147	 96968658	-	lnc-ATG2B-2	lnc-ATG2B-2:1	ENSG00000260806.1	RP11-872J21.3	PAPOLA	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10chr14:96968720-96978658"	NA	inter
CUST_15818_PI429285431	0.8893106	A	0.8846637	A	1.00322617858154	0	lncRNA	17508-1_{1..304}	lnc-TLE3-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TLE3-3:2	chr15	 70589484	 70589787	-	lnc-TLE3-3	lnc-TLE3-3:2	XLOC_011520	linc-TLE3-2	NA	NA	NA	inter
LNCA_21_P0004885	3.5498877	P	1.9459982	A	3.03961689122939	0	lncRNA	TCONS_00011820	NA	NA	NA	NA	XLOC_005303	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005303), lincRNA [TCONS_00011820]"	chr6:45634279-45634338	hs|6p21.1	Agilent_HUMAN_G3V2	TCONS_00011820	TCONS_00011820	chr6	 45634279	 45634338	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3242214	0.90428704	A	0.9293334	A	0.982789016797488	0	lncRNA	ENST00000517343	XR_108919	XR_108919	NA	NA	NA	NA	ENST00000517343	THC2653862	NA	"PREDICTED: Homo sapiens hypothetical LOC100505739 (LOC100505739), miscRNA [XR_108919]"	chr8:70337796-70337737	hs|8q13.2	Agilent_HUMAN_G3V2	ENST00000517343	ENST00000517343	chr8	 70337737	 70337796	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13173_PI429285431	0.9163216	A	0.9148245	A	1.001038249252	0	lncRNA	14800-1_{1..2793}	lnc-AMZ2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AMZ2-1:2	chr17	 66182884	 66185676	+	lnc-AMZ2-1	lnc-AMZ2-1:2	XLOC_012288	linc-AMZ2-2	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
LNCA_21_P0007230	7.4826035	P	7.004696	P	1.39272218187186	0	lncRNA	TCONS_00019371	NA	NA	NA	NA	XLOC_009195	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009195), lincRNA [TCONS_00019371]"	chr11:69680412-69681838	hs|11q13.3	Agilent_HUMAN_G3V2	TCONS_00019371	TCONS_00019371	chr11	 69680412	 69681838	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27090_PI429285431	0.8926246	A	1.142432	A	0.841008682542425	0	lncRNA	28623-1_{1..565}	n324201|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257953|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257953|-1.1800900|-0.3313164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324201|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257953|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257953|-1.1800900|-0.3313164	chr7	114488826	114489390	-	NA	NA	NA	NA	MDFIC	"hg19_refFlat_MDFIC:range=chr7:114562472-1146559895'pad=0,hg19_refFlat_MDFIC:range=chr7:114562472-1146559895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MDFIC:range=chr7:114563089-1146559895'pad=0,hg19_refFlat_MDFIC:range=chr7:114563089-1146559895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50chr7:114562209-114659970"	NA	inner
CUST_33965_PI429285431	8.651732	P	7.959074	P	1.61625854786517	0	lncRNA	35503-2_{3001..5713}	n340774|D83785|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3237|NULL|14.2619000|-0.1955349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340774|D83785|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3237|NULL|14.2619000|-0.1955349	chr5	179162850	179165562	+	NA	NA	NA	NA	MAML1	NA	chr5:179159851-179204287	inner
CUST_19563_PI429285431	1.2751597	A	1.8464432	A	0.673017768788635	0	lncRNA	21219-1_{1..494}	lnc-HPCAL1-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HPCAL1-1:12	chr2	 10595549	 10596042	+	lnc-HPCAL1-1	lnc-HPCAL1-1:12	ENSG00000217258.2	AC007249.3	ODC1	NA	chr2:10585549-10588453	inter
CUST_39164_PI429285431	9.2717495	P	9.060136	P	1.15798253950959	0	lncRNA	40141-1_{1..2509}	n385842|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004fec.1||-0.9667660|-0.1811918	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n385842|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004fec.1||-0.9667660|-0.1811918	chrX	149113850	149116358	+	NA	NA	NA	NA	CXorf40B	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20chrX:149103850-149106716"	NA	inter
CUST_28151_PI429285431	0.89916974	A	1.0066935	A	0.928179822161072	0	lncRNA	29776-1_{1..399}	n325427|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323586|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323586|-1.1420100|-0.3850294	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325427|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323586|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323586|-1.1420100|-0.3850294	chr2	 12656563	 12656961	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50866_PI429285431	7.788353	P	8.728558	P	0.521158821006625	0	lncRNA	54510-1_{1..835}	hg19_lincRNAsTranscripts_TCONS_l2_00004763 range=chr11:112160846-112162499 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004763 range=chr11:112160846-112162499 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	112160846	112161680	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003768	1.3826442	A	0.9154163	A	1.3824505725679	0	lncRNA	TCONS_00008570	NA	NA	NA	NA	XLOC_004065	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004065), lincRNA [TCONS_00008570]"	chr4:127149848-127149789	hs|4q28.1	Agilent_HUMAN_G3V2	TCONS_00008570	TCONS_00008570	chr4	127149789	127149848	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012433	4.127752	P	4.0884776	P	1.0275968692925	0	lncRNA	ENST00000452244	NA	NA	NA	NA	XLOC_l2_010097	NA	ENST00000452244	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010097), lincRNA [TCONS_l2_00019133]"	chr3:6782207-6782148	hs|3p26.1	Agilent_HUMAN_G3V2	ENST00000452244	ENST00000452244	chr3	  6782148	  6782207	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38705_PI429285431	0.920725	A	0.96081483	A	0.972594386537444	0	lncRNA	39700-1_{1..1554}	n384123|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003abv.2||1.6891500|-0.2500266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384123|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003abv.2||1.6891500|-0.2500266	chr22	 25851678	 25853231	+	NA	NA	NA	NA	NA	"hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-31.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50"	NA	inter
CUST_23326_PI429285431	0.9159688	A	0.9732286	A	0.961087840454499	0	lncRNA	24897-1_{1..260}	lnc-SCIN-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SCIN-2:2	chr7	 12568528	 12568787	+	lnc-SCIN-2	lnc-SCIN-2:2	ENSG00000226690.2	AC005281.1	NA	NA	NA	inter
CUST_5739_PI429285431	1.5966611	A	0.9033479	A	1.61699273844125	0	lncRNA	5663-1_{1..232}	"transcript_id ""ENST00000455092.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455092.1"" | genecode_v17"	chr17	 14629046	 14629277	+	ENSG00000226130.1	ENST00000455092.1	AC013248.2	AC013248.2-001	NA	NA	NA	inter
CUST_34485_PI429285431	5.435855	P	5.665305	P	0.852960004544747	0	lncRNA	35953-1_{1..2716}	n341362|AK055458|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3831|NULL|-1.1545500|-0.3085172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341362|AK055458|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3831|NULL|-1.1545500|-0.3085172	chr7	151062969	151065684	-	NA	NA	NA	NA	NUB1	"hg19_refFlat_NUB1:range=chr7:151038863-1510743115'pad=0,hg19_refFlat_NUB1:range=chr7:151038863-1510743115'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90chr7:151052969-151075535"	NA	inner
CUST_18242_PI429285431	1.607777	A	1.4275137	A	1.13309066187703	0	lncRNA	19976-1_{1..379}	lnc-PRAMEF8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRAMEF8-1:1	chr1	 13385781	 13386159	-	lnc-PRAMEF8-1	lnc-PRAMEF8-1:1	ENSG00000235800	RP11-219C24.9	PRAMEF8	NA	chr1:13379020-13390765	inter
CUST_27963_PI429285431	1.2494266	A	1.001102	A	1.18782689180428	0	lncRNA	29567-1_{1..561}	n325212|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329252|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329252|-1.3819300|-0.3666926	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325212|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329252|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329252|-1.3819300|-0.3666926	chr2	104642226	104642786	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13812_PI429285431	0.8849693	A	0.8984113	A	0.990725986998292	0	lncRNA	15455-1_{1..1887}	lnc-C21orf33-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C21orf33-3:1	chr21	 45628352	 45630238	+	lnc-C21orf33-3	lnc-C21orf33-3:1	XLOC_013968	linc-AIRE-2	NA	NA	NA	inter
CUST_11764_PI429285431	0.9036049	A	0.91514856	A	0.992030471052379	0	lncRNA	13344-1_{1..1247}	lnc-MMD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-MMD-1:1	chr17	 53535586	 53536832	-	lnc-MMD-1	lnc-MMD-1:1	XLOC_012525	linc-MMD-1	NA	NA	NA	inter
CUST_4419_PI429285431	1.3549845	A	0.9687046	A	1.30701880649281	0	lncRNA	4369-1_{1..553}	"transcript_id ""ENST00000546696.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546696.1"" | genecode_v17"	chr12	115700975	115701527	+	ENSG00000257519.1	ENST00000546696.1	RP11-116D17.2	RP11-116D17.2-001	NA	NA	NA	inter
CUST_14725_PI429285431	1.3551254	A	1.4183387	A	0.957129937705718	0	lncRNA	16389-1_{1..583}	lnc-CDK5R2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK5R2-1:2	chr2	219842204	219842786	+	lnc-CDK5R2-1	lnc-CDK5R2-1:2	XLOC_001866	linc-FAM134A	FEV	NA	chr2:219845809-219850379	inter
LNCA_21_P0014786	0.87769353	A	0.88518	A	0.99482421519906	0	lncRNA	XR_132568	XR_132568	XR_132568	NA	Hs.663402	LOC100507663	uncharacterized LOC100507663	NA	THC2487229	NA	"PREDICTED: Homo sapiens hypothetical LOC100507663 (LOC100507663), miscRNA [XR_132568]"	chr10:31310130-31310071	hs|10p11.22	Agilent_HUMAN_G3V2	XR_132568	XR_132568	chr10	 31310071	 31310130	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001397	1.3952833	A	2.9400847	P	0.342742879649957	0	lncRNA	TCONS_00001218	NA	NA	NA	NA	XLOC_000490	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000490), lincRNA [TCONS_00001218]"	chr1:184091478-184091537	hs|1q25.3	Agilent_HUMAN_G3V2	TCONS_00001218	TCONS_00001218	chr1	184091478	184091537	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18633_PI429285431	2.9509492	P	2.6061199	A	1.27000070688088	0	lncRNA	20338-1_{1..1217}	lnc-ZBTB49-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZBTB49-2:1	chr4	  4075923	  4077139	+	lnc-ZBTB49-2	lnc-ZBTB49-2:1	ENSG00000248614	AC116562.3	NA	NA	NA	inter
LNCA_21_P0004373	0.8749938	A	0.87935704	A	0.996980201288231	0	lncRNA	THC2721945	NA	NA	NA	NA	XLOC_004765	NA	NA	THC2721945	NA	"BROAD Institute lincRNA (XLOC_004765), lincRNA [TCONS_00010292]"	chr5:029380435-029380376	hs|5p13.3	Agilent_HUMAN_G3V2	THC2721945	THC2721945	chr5	 29380376	 29380435	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13184_PI429285431	0.89601755	A	0.8995281	A	0.997569630307598	0	lncRNA	14811-1_{1..306}	lnc-DHX37-9:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-9:7	chr12	127174796	127175101	-	lnc-DHX37-9	lnc-DHX37-9:7	XLOC_010243	linc-DHX37-8	NA	NA	NA	inter
LNCA_21_P0011788	3.6949286	P	4.325982	P	0.645704774553934	0	lncRNA	TCONS_l2_00013426	NA	NA	NA	NA	XLOC_l2_007167	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007167), lincRNA [TCONS_l2_00013426]"	chr2:754258-754317	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_l2_00013426	TCONS_l2_00013426	chr2	   754258	   754317	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31662_PI429285431	0.88641346	A	0.9038588	A	0.987980628473277	0	lncRNA	33412-1_{1..1008}	n338185|BC037972|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|576|NULL|-0.8497270|-0.1930251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n338185|BC037972|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|576|NULL|-0.8497270|-0.1930251	chr22	 47857047	 47858054	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3428_PI429285431	0.9177024	A	1.0005879	A	0.944167350351012	0	lncRNA	3399-1_{1..416}	"transcript_id ""ENST00000419576.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419576.1"" | genecode_v17"	chr9	 70922309	 70922724	+	ENSG00000225337.1	ENST00000419576.1	RP11-561O23.7	RP11-561O23.7-001	CBWD3	NA	chr9:70912309-70914932	inter
CUST_14257_PI429285431	1.0098069	A	1.0864865	A	0.948237530468053	0	lncRNA	15914-1_{1..412}	lnc-MYLIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYLIP-1:1	chr6	 16152916	 16153327	+	lnc-MYLIP-1	lnc-MYLIP-1:1	XLOC_005185	linc-GMPR	GMPR	NA	chr6:16161165-16163073	inter
CUST_37027_PI429285431	0.87884676	A	0.8782717	A	1.00039868066967	0	lncRNA	38165-1_{1..2837}	n345482|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1031|NULL|-1.4965400|-0.1513180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345482|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1031|NULL|-1.4965400|-0.1513180	chr1	205405121	205407957	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1976_PI429285431	0.89305896	A	0.8999911	A	0.995206532216648	0	lncRNA	1967-1_{1..885}	"transcript_id ""ENST00000561655.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561655.1"" | genecode_v17"	chr4	174514823	174515707	+	ENSG00000261672.1	ENST00000561655.1	RP11-475B2.1	RP11-475B2.1-001	NA	NA	NA	inter
CUST_15513_PI429285431	0.87461036	A	1.4014822	A	0.694058012540198	0	lncRNA	17202-1_{1..3000}	lnc-NAP1L2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NAP1L2-1:4	chrX	 73061217	 73064216	-	lnc-NAP1L2-1	lnc-NAP1L2-1:4	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_45839_PI429285431	5.357445	P	5.770703	P	0.75092566194473	0	lncRNA	50172-2_{3001..6000}	"gi|226437604|ref|NR_027473.1| Homo sapiens lysine (K)-specific demethylase 2A (KDM2A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226437604|ref|NR_027473.1| Homo sapiens lysine (K)-specific demethylase 2A (KDM2A), transcript variant 2, non-coding RNA"	Chr11	 66889740	 66892739	+	22992	NR_027473.1	NA	NA	NA	NA	NA	inter
CUST_14493_PI429285431	0.8975391	A	0.90495855	A	0.994870430556899	0	lncRNA	16160-1_{1..1781}	lnc-G3BP1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-G3BP1-2:3	chr5	151104126	151105906	+	lnc-G3BP1-2	lnc-G3BP1-2:3	XLOC_004606	linc-G3BP1	NA	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40"	NA	inter
CUST_1676_PI429285431	0.9289584	A	0.90192837	A	1.01891240527151	0	lncRNA	1660-1_{1..802}	"transcript_id ""ENST00000605571.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605571.1"" | genecode_v17"	chr4	  1714548	  1715349	+	ENSG00000270195.1	ENST00000605571.1	RP11-572O17.1	RP11-572O17.1-001	SLBP	NA	chr4:1704548-1714030	inter
CUST_19426_PI429285431	2.218241	A	1.1478347	A	2.10002470490069	0	lncRNA	21087-1_{1..736}	lnc-AC007405.2.1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC007405.2.1-4:2	chr2	171207246	171207981	-	lnc-AC007405.2.1-4	lnc-AC007405.2.1-4:2	ENSG00000231898.2	AC012594.1	MYO3B	NA	chr2:171197246-171217565	inter
CUST_1295_PI429285431	2.6718676	A	3.4707975	P	0.574775351453235	0	lncRNA	1285-1_{1..630}	"transcript_id ""ENST00000432743.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000432743.1"" | genecode_v17"	chr3	  6736410	  6737039	+	ENSG00000189229.10	ENST00000432743.1	AC069277.2	AC069277.2-001	NA	NA	NA	inter
CUST_26990_PI429285431	1.1533563	A	0.9006231	A	1.19146221510442	0	lncRNA	28517-1_{1..931}	n324090|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000037029|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000037029|-0.9939580|-0.1942193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324090|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000037029|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000037029|-0.9939580|-0.1942193	chr9	 46160781	 46161711	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12032_PI429285431	2.1734598	A	0.8925329	A	2.42995045738786	0	lncRNA	13615-1_{1..403}	lnc-FOXD4L1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXD4L1-1:2	chr2	114271015	114271417	+	lnc-FOXD4L1-1	lnc-FOXD4L1-1:2	XLOC_001631	linc-RABL2A-2	NA	NA	NA	inter
CUST_7191_PI429285431	1.0018365	A	0.9977222	A	1.00285588573897	0	lncRNA	7514-1_{1..234}	"transcript_id ""ENST00000515942.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515942.1"" | genecode_v17"	chr3	157648281	157648514	-	ENSG00000251751.1	ENST00000515942.1	RN7SKP46	RN7SKP46-201	NA	NA	NA	inter
LNCA_21_P0012229	2.443247	A	2.1828017	A	1.19784837357502	0	lncRNA	ENST00000433303	NA	NA	NA	NA	XLOC_l2_009181	NA	ENST00000433303	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009181), lincRNA [TCONS_l2_00017476]"	chr21:29539608-29539549	hs|21q21.3	Agilent_HUMAN_G3V2	ENST00000433303	ENST00000433303	chr21	 29539549	 29539608	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40047_PI429285431	9.436619	P	9.853654	P	0.748962297053027	0	lncRNA	40900-1_{1..1805}	n407251|NR_026717|lncRNA|Homosapiens||RefGeneNoncode|NR_026717||7.9742300|-0.1620408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407251|NR_026717|lncRNA|Homosapiens||RefGeneNoncode|NR_026717||7.9742300|-0.1620408	chr6	 31938951	 31940755	+	NA	NA	NA	NA	C4A	NA	chr6:31949834-31959223	inner
LNCA_21_P0001207	0.87723327	A	0.8797797	A	0.998236506011056	0	lncRNA	XR_132474	XR_132474	XR_132474	NA	Hs.568485	LOC100652834	uncharacterized LOC100652834	ENST00000428569	THC2631482	NA	"PREDICTED: Homo sapiens hypothetical LOC100652834 (LOC100652834), miscRNA [XR_132474]"	chr1:191827966-191827907	hs|1q31.2	Agilent_HUMAN_G3V2	XR_132474	XR_132474	chr1	191827907	191827966	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_901_PI429285431	1.4655346	A	1.6716313	A	0.866879456949867	0	lncRNA	890-1_{1..627}	"transcript_id ""ENST00000439964.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439964.1"" | genecode_v17"	chr2	 64871746	 64872372	+	ENSG00000226756.1	ENST00000439964.1	AC007365.3	AC007365.3-001	SERTAD2	NA	chr2:64861746-64881046	inner
CUST_12652_PI429285431	2.0051837	A	1.6418647	A	1.28638188896788	0	lncRNA	14267-1_{1..3000}	lnc-WDR91-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR91-1:1	chr7	134950918	134953917	-	lnc-WDR91-1	lnc-WDR91-1:1	XLOC_006617	linc-WDR91	STRA8	NA	chr7:134940918-134943244	inter
CUST_39279_PI429285431	1.0079409	A	3.7178671	A	0.152837852819097	0	lncRNA	40251-1_{1..1293}	n386254|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fjw.1||1.3504200|-0.2438669	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386254|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010fjw.1||1.3504200|-0.2438669	chr2	110969791	110971083	-	NA	NA	NA	NA	NPHP1	NA	chr2:110959791-110962639	inter
LNCA_21_P0009929	0.8740578	A	0.87850374	A	0.996923052759127	0	lncRNA	TCONS_00028096	NA	NA	NA	NA	XLOC_013447	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013447), lincRNA [TCONS_00028096]"	chr20:4744879-4744938	hs|20p13	Agilent_HUMAN_G3V2	TCONS_00028096	TCONS_00028096	chr20	  4744879	  4744938	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46399_PI429285431	1.3443364	A	0.8940266	A	1.36633362763394	0	lncRNA	50615-2_{3001..6000}	"gi|381140055|ref|NR_046473.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 16, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|381140055|ref|NR_046473.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 16, non-coding RNA"	Chr14	101295445	101298444	+	55384	NR_046473.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70"	NA	inter
CUST_47233_PI429285431	0.9083079	A	0.8980319	A	1.0071482077632	0	lncRNA	51308-1_{1..2034}	"gi|223718128|ref|NR_026885.1| Homo sapiens uncharacterized LOC100270804 (LOC100270804), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223718128|ref|NR_026885.1| Homo sapiens uncharacterized LOC100270804 (LOC100270804), non-coding RNA"	Chr20	 18774693	 18776726	+	100270804	NR_026885.1	NA	NA	NA	NA	NA	inter
CUST_134_PI429201921	0.90016323	A	0.91068417	A	0.992733966296637	0	lncRNA	122-2_{3001..3602}	TC05002918.hg.1	TCONS_l2_00023683-XLOC_l2_011959 // Broad TUCP // linc-MYO10-5 chr5:-:19035305-19038849 // chr5 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00022810-XLOC_l2_011959 // Broad TUCP // linc-MYO10-5 chr5:-:19037664-19038869 // chr5 // 100 // 100 // 0 // --- // 0/// TCONS_l2_00023684-XLOC_l2_011959 // Broad TUCP // linc-MYO10-5 chr5:-:19036014-19038908 // chr5 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr5:-:19035305-19038849	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00023683-XLOC_l2_011959	linc-MYO10-5	chr5	 19035305	 19038849	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42508_PI429285431	7.96959	P	8.415274	P	0.734236123454271	0	lncRNA	45286-1_{1..184}	ENST00000516595 ncrna:snoRNA chromosome:GRCh37:1:9142755:9142938:1 gene:ENSG00000252404 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516595 ncrna:snoRNA chromosome:GRCh37:1:9142755:9142938:1 gene:ENSG00000252404 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	  9142755	  9142938	+	ENSG00000252404	ENST00000516595	NA	NA	SLC2A5	NA	chr1:9132755-9148510	inter
CUST_14871_PI429285431	1.4900234	A	1.3772005	A	1.08134201372019	0	lncRNA	16535-1_{1..403}	lnc-HOXC4-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HOXC4-5:1	chr12	 54562070	 54562472	+	lnc-HOXC4-5	lnc-HOXC4-5:1	XLOC_009766	linc-HNRNPA1-2	NA	NA	NA	inter
CUST_49238_PI429285431	0.8823469	A	0.89512134	A	0.991184519160803	0	lncRNA	53059-1_{1..1631}	hg19_lincRNAsTranscripts_TCONS_l2_00022200 range=chr5:12574650-12655792 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022200 range=chr5:12574650-12655792 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 12574650	 12576280	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38730_PI429285431	0.88506716	A	0.8989315	A	0.990436000575611	0	lncRNA	39724-2_{3001..4076}	n384231|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003can.2||-0.1070410|-0.3911618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384231|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003can.2||-0.1070410|-0.3911618	chr3	 15784726	 15785801	+	NA	NA	NA	NA	ANKRD28	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10chr3:15771726-15813693"	NA	inner
CUST_45264_PI429285431	5.036908	P	5.0453424	P	0.994170775663878	0	lncRNA	49715-2_{3001..3595}	"gi|224809565|ref|NR_027321.1| Homo sapiens uncharacterized LOC157381 (LOC157381), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224809565|ref|NR_027321.1| Homo sapiens uncharacterized LOC157381 (LOC157381), non-coding RNA"	Chr8	125957250	125957844	+	157381	NR_027321.1	NA	NA	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
CUST_5037_PI429285431	0.8921602	A	0.89807284	A	0.995910056946631	0	lncRNA	4978-1_{1..418}	"transcript_id ""ENST00000556987.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556987.1"" | genecode_v17"	chr14	101872324	101872741	-	ENSG00000259023.2	ENST00000556987.1	LINC00524	LINC00524-002	NA	NA	NA	inter
CUST_38643_PI429285431	3.7849848	P	3.942589	P	0.896512621968423	0	lncRNA	39646-1_{1..1294}	n383868|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wrm.1||0.4121210|-0.1879843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n383868|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wrm.1||0.4121210|-0.1879843	chr20	 19780217	 19781510	+	NA	NA	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60"	NA	inter
CUST_284_PI429201921	3.5093393	P	3.3635607	A	1.10632755995481	0	lncRNA	202-1_{1..3000}	TC07002965.hg.1	 TCONS_l2_00026593-XLOC_l2_013846 // Broad TUCP // linc-LOC389493-9 chr7:-:56947711-56950089 // chr7 // 100 // 100 // 0 // --- // 0///TCONS_l2_00027366-XLOC_l2_013846 // Broad TUCP // linc-LOC389493-9 chr7:-:56943077-56949839 // chr7 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr7:-:56943077-56949839	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00027366-XLOC_l2_013846	linc-LOC389493-9	chr7	 56943077	 56949839	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12203_PI429285431	3.8411014	P	4.073643	P	0.851134124769477	0	lncRNA	13804-1_{1..423}	lnc-PCSK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCSK2-1:1	chr20	 17132993	 17133415	+	lnc-PCSK2-1	lnc-PCSK2-1:1	XLOC_013468	linc-PCSK2	NA	NA	NA	inter
CUST_38975_PI429285431	9.931739	P	9.568191	P	1.28658609347751	0	lncRNA	39959-1_{1..1902}	n385203|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tvc.3||2.4579100|-0.2526538	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385203|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tvc.3||2.4579100|-0.2526538	chr7	 66018552	 66020453	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41262_PI429285431	6.1642866	P	6.4709587	P	0.808504607245185	0	lncRNA	42225-1_{1..89}	ENST00000577590 ncrna:miRNA chromosome:GRCh37:16:28855240:28855328:-1 gene:ENSG00000264455 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577590 ncrna:miRNA chromosome:GRCh37:16:28855240:28855328:-1 gene:ENSG00000264455 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 28855240	 28855328	-	ENSG00000264455	ENST00000577590	NA	NA	ATXN2L	NA	chr16:28845240-28848558	inter
CUST_30997_PI429285431	4.519072	P	4.378575	P	1.10228478113397	0	lncRNA	32785-1_{1..652}	n337160|AF399586|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383998|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383998|3.6556900|-0.2060054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337160|AF399586|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383998|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383998|3.6556900|-0.2060054	chr19	 16060022	 16060673	+	NA	NA	NA	NA	OR10H4	NA	chr19:16059818-16060768	inner
LNCA_32_P218025	3.7569041	P	2.2230196	A	2.89564451452475	0	lncRNA	XR_109812	XR_109812	XR_109812	100506253	Hs.136333	LOC100506253	uncharacterized LOC100506253	NA	THC2689530	NA	"PREDICTED: Homo sapiens hypothetical LOC100506253 (LOC100506253), miscRNA [XR_109812]"	chr4:76103993-76103934	hs|4q13.3	Agilent_HUMAN_G3V2	XR_109812	XR_109812	chr4	 76103934	 76103993	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47083_PI429285431	2.2221656	A	1.497376	A	1.65265959788647	0	lncRNA	51168-1_{1..3000}	"gi|224591393|ref|NR_027130.1| Homo sapiens zinc finger protein 738 (ZNF738), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224591393|ref|NR_027130.1| Homo sapiens zinc finger protein 738 (ZNF738), non-coding RNA"	Chr19	 21541735	 21544734	+	148203	NR_027130.1	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ISCA1:range=chr9:88880958-888973735'pad=0,hg19_refFlat_ISCA1:range=chr9:88880958-888973735'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_45188_PI429285431	2.0425925	A	1.3624096	A	1.60234288191668	0	lncRNA	49657-1_{1..3000}	"gi|237858637|ref|NR_027668.1| Homo sapiens ring finger protein 170 (RNF170), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237858637|ref|NR_027668.1| Homo sapiens ring finger protein 170 (RNF170), transcript variant 5, non-coding RNA"	Chr8	 42708437	 42711436	-	81790	NR_027668.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90"	NA	inter
CUST_6802_PI429285431	0.8959247	A	0.89721566	A	0.999105574952539	0	lncRNA	6750-1_{1..760}	"transcript_id ""ENST00000430060.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430060.1"" | genecode_v17"	chr21	 23119305	 23120064	+	ENSG00000233997.1	ENST00000430060.1	AP000475.2	AP000475.2-001	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10"	NA	inter
CUST_12262_PI429285431	0.90148634	A	0.92204684	A	0.985849618637761	0	lncRNA	13869-1_{1..791}	lnc-GLRB-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLRB-4:1	chr4	157564606	157565396	+	lnc-GLRB-4	lnc-GLRB-4:1	XLOC_003756	linc-GLRB-2	NA	NA	NA	inter
CUST_7772_PI429285431	1.216133	A	0.91551137	A	1.23167500448429	0	lncRNA	9398-1_{1..2969}	lnc-HYAL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HYAL3-1:1	chr3	 50339166	 50342134	-	lnc-HYAL3-1	lnc-HYAL3-1:1	ENSG00000250212	ENST00000507563	HYAL3	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr3:50330259-50336899"	NA	inner
CUST_27072_PI429285431	0.8895716	A	1.4378176	A	0.683851035692505	0	lncRNA	28604-1_{1..456}	n324181|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322242|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322242|-0.9732320|-0.1790425	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324181|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322242|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322242|-0.9732320|-0.1790425	chr7	154689941	154690396	+	NA	NA	NA	NA	DPP6	NA	chr7:154679941-154685995	inter
CUST_23442_PI429285431	1.3849274	A	2.1420174	A	0.591688598269404	0	lncRNA	25010-1_{1..3000}	lnc-PARN-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PARN-7:2	chr16	 14024534	 14027533	-	lnc-PARN-7	lnc-PARN-7:2	ENSG00000262732.1	CTD-2135D7.2	ERCC4	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ERCC4:range=chr16:14014023-140422045'pad=0,hg19_refFlat_ERCC4:range=chr16:14014023-140422045'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60chr16:14014534-14039467"	NA	inner
CUST_17256_PI429285431	5.1803474	P	5.319593	P	0.907993830465563	0	lncRNA	18974-1_{1..671}	lnc-C15orf2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-2:1	chr15	 24752486	 24753156	+	lnc-C15orf2-2	lnc-C15orf2-2:1	XLOC_011181	linc-C15orf2-1	NA	NA	NA	inter
LNCA_21_P0002028	0.88616097	A	0.89998496	A	0.990463701961117	0	lncRNA	ENST00000430429	NA	NA	NA	NA	XLOC_002008	NA	ENST00000430429	NA	NA	"BROAD Institute lincRNA (XLOC_002008), lincRNA [TCONS_00003223]"	chr2:20263676-20263617	hs|2p24.1	Agilent_HUMAN_G3V2	ENST00000430429	ENST00000430429	chr2	 20263617	 20263676	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3588_PI429285431	2.5865936	A	2.9853227	A	0.7585261904873	0	lncRNA	3558-1_{1..390}	"transcript_id ""ENST00000417149.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417149.1"" | genecode_v17"	chr10	  3282563	  3282952	-	ENSG00000226762.1	ENST00000417149.1	RP11-298E9.6	RP11-298E9.6-001	NA	NA	NA	inter
CUST_11462_PI429285431	1.1508862	A	1.0285913	A	1.08846491106936	0	lncRNA	13027-1_{1..829}	lnc-NDFIP2-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NDFIP2-10:1	chr13	 81618102	 81618930	+	lnc-NDFIP2-10	lnc-NDFIP2-10:1	XLOC_010455	linc-SLITRK5-8	NA	NA	NA	inter
CUST_17309_PI429285431	1.690177	A	0.91358244	A	1.71308241502953	0	lncRNA	19027-1_{1..264}	lnc-SGPL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SGPL1-3:1	chr10	 72728697	 72728960	+	lnc-SGPL1-3	lnc-SGPL1-3:1	XLOC_008509	linc-UNC5B-1	NA	NA	NA	inter
CUST_39900_PI429285431	4.149158	P	3.4592004	P	1.61323610564107	0	lncRNA	40784-1_{1..2118}	n406618|NR_024141|lncRNA|Homosapiens||RefGeneNoncode|NR_024141||0.5127830|-0.4068858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406618|NR_024141|lncRNA|Homosapiens||RefGeneNoncode|NR_024141||0.5127830|-0.4068858	chr10	112658487	112660604	-	NA	NA	NA	NA	BBIP1	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10chr10:112658488-112679124"	NA	inner
CUST_38413_PI429285431	2.212657	A	3.5722687	P	0.389687159645709	0	lncRNA	39443-1_{1..342}	n382393|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yzs.2||-0.8085080|-0.1932571	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n382393|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yzs.2||-0.8085080|-0.1932571	chr15	 25456838	 25457179	+	NA	NA	NA	NA	SNRPN	NA	chr15:25446838-25467180	inter
CUST_36454_PI429285431	1.0392897	A	0.90617824	A	1.09665631099098	0	lncRNA	37665-1_{1..3000}	n344965|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_514|NULL|-1.3151500|-0.3658060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344965|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_514|NULL|-1.3151500|-0.3658060	chr7	105548098	105551097	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36954_PI429285431	0.8887311	A	1.367389	A	0.71764491914713	0	lncRNA	38105-2_{3001..6000}	n345421|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_970|NULL|-1.6102100|-0.3541464	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345421|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_970|NULL|-1.6102100|-0.3541464	chr1	193227753	193230752	+	NA	NA	NA	NA	CDC73	NA	chr1:193214753-193223945	inter
CUST_26907_PI429285431	1.5136738	A	0.88985026	A	1.54095372689945	0	lncRNA	28425-1_{1..1299}	n323983|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053807|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053807|-0.9774480|-0.3407561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323983|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053807|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053807|-0.9774480|-0.3407561	chr9	119450704	119452002	+	NA	NA	NA	NA	ASTN2	NA	chr9:119440704-119469126	inner
LNCA_21_P0002288	2.232103	A	2.8983784	A	0.63013139680494	0	lncRNA	TCONS_00003849	NA	NA	NA	NA	XLOC_001655	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001655), lincRNA [TCONS_00003849]"	chr2:124203698-124203757	hs|2q14.3	Agilent_HUMAN_G3V2	TCONS_00003849	TCONS_00003849	chr2	124203698	124203757	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44347_PI429285431	0.8974018	A	0.9070465	A	0.993337099602	0	lncRNA	48971-1_{1..2481}	"gi|323641476|ref|NR_037888.1| Homo sapiens uncharacterized LOC100507266 (LOC100507266), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|323641476|ref|NR_037888.1| Homo sapiens uncharacterized LOC100507266 (LOC100507266), non-coding RNA"	Chr4	  4543858	  4546338	+	100507266	NR_037888.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008480	5.107397	P	5.69422	P	0.665807487564642	0	lncRNA	TCONS_00022844	NA	NA	NA	NA	XLOC_011111	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011111), lincRNA [TCONS_00022844]"	chr14:95856310-95856251	hs|14q32.13	Agilent_HUMAN_G3V2	TCONS_00022844	TCONS_00022844	chr14	 95856251	 95856310	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007798	1.6178668	A	1.6788238	A	0.958628010290188	0	lncRNA	TCONS_00020992	NA	NA	NA	NA	XLOC_010257	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010257), lincRNA [TCONS_00020992]"	chr12:128571167-128571108	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020992	TCONS_00020992	chr12	128571108	128571167	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49992_PI429285431	1.7931887	A	0.90319115	A	1.85317297670009	0	lncRNA	53729-1_{1..2689}	hg19_lincRNAsTranscripts_TCONS_l2_00027019 range=chr7:158413308-158416118 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027019 range=chr7:158413308-158416118 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	158413308	158415996	-	NA	NA	NA	NA	NCAPG2	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70chr7:158414865-158426118"	NA	inter
CUST_543_PI429285431	3.188508	P	3.3742046	P	0.87922444312242	0	lncRNA	535-1_{1..775}	"transcript_id ""ENST00000412772.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000412772.1"" | genecode_v17"	chr1	203256280	203257054	+	ENSG00000231507.1	ENST00000412772.1	RP11-134P9.3	RP11-134P9.3-001	NA	NA	NA	inter
CUST_41341_PI429285431	5.142563	P	5.5049276	P	0.777888562577346	0	lncRNA	42408-1_{1..62}	ENST00000585099 ncrna:miRNA chromosome:GRCh37:9:137271257:137271318:1 gene:ENSG00000263897 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585099 ncrna:miRNA chromosome:GRCh37:9:137271257:137271318:1 gene:ENSG00000263897 gene_biotype:miRNA transcript_biotype:miRNA	chr9	137271257	137271318	+	ENSG00000263897	ENST00000585099	NA	NA	RXRA	NA	chr9:137261257-137281318	inner
LNCA_21_P0006578	0.87442636	A	0.8771385	A	0.998121853733875	0	lncRNA	TCONS_00017503	NA	NA	NA	NA	XLOC_008151	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008151), lincRNA [TCONS_00017503]"	chrX:46186759-46185851	hs|Xp11.3	Agilent_HUMAN_G3V2	TCONS_00017503	TCONS_00017503	chrX	 46185851	 46186759	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16071_PI429285431	1.626049	A	1.7532042	A	0.915635180344496	0	lncRNA	17774-1_{1..464}	lnc-PNMA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PNMA2-2:1	chr8	 26724453	 26724916	-	lnc-PNMA2-2	lnc-PNMA2-2:1	XLOC_007030	linc-ADRA1A	ADRA1A	NA	chr8:26714453-26722922	inter
LNCA_21_P0014115	5.240851	P	4.801687	P	1.35581844224403	0	lncRNA	XR_108483	XR_108483	XR_108483	NA	Hs.656716	LOC100507015	uncharacterized LOC100507015	NA	THC2474283	NA	"PREDICTED: Homo sapiens hypothetical LOC100507015 (LOC100507015), miscRNA [XR_108483]"	chr3:129565976-129565917	hs|3q22.1	Agilent_HUMAN_G3V2	XR_108483	XR_108483	chr3	129565917	129565976	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20436_PI429285431	0.8853383	A	0.89659166	A	0.992230108130163	0	lncRNA	22080-1_{1..393}	lnc-GRAMD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GRAMD2-1:1	chr15	 72447524	 72447916	-	lnc-GRAMD2-1	lnc-GRAMD2-1:1	ENSG00000260173.1	RP11-2I17.4	GRAMD2	NA	chr15:72452147-72457800	inter
CUST_25134_PI429285431	0.88254243	A	1.2930063	A	0.752381421474279	0	lncRNA	26672-1_{1..679}	lnc-STAT3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-STAT3-1:1	chr17	 40424462	 40425140	-	lnc-STAT3-1	lnc-STAT3-1:1	ENSG00000236194.1	AC003104.1	STAT5B	NA	chr17:40414462-40428424	inner
CUST_20195_PI429285431	3.808846	P	4.03424	P	0.855361394594156	0	lncRNA	21838-1_{1..508}	lnc-ALX3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALX3-2:1	chr1	110721249	110721756	-	lnc-ALX3-2	lnc-ALX3-2:1	ENSG00000235526.1	RP5-1028L10.2	SLC6A17	NA	chr1:110711249-110731341	inner
LNCA_21_P0012677	2.069998	A	0.8760705	A	2.28774697697975	0	lncRNA	TCONS_l2_00021277	NA	NA	NA	NA	XLOC_l2_011244	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011244), lincRNA [TCONS_l2_00021277]"	chr4:123644904-123644845	hs|4q27	Agilent_HUMAN_G3V2	TCONS_l2_00021277	TCONS_l2_00021277	chr4	123644845	123644904	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40090_PI429285431	1.1175368	A	0.9043683	A	1.1592313367698	0	lncRNA	40937-1_{1..3000}	n407447|NR_026904|lncRNA|Homosapiens||RefGeneNoncode|NR_026904||7.7807800|-0.3205880	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407447|NR_026904|lncRNA|Homosapiens||RefGeneNoncode|NR_026904||7.7807800|-0.3205880	chr2	147344624	147347623	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.12;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70"	NA	inter
CUST_31518_PI429285431	0.8763697	A	1.0643687	A	0.877822406069434	0	lncRNA	33278-1_{1..3000}	n338005|BC047385|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|392|NULL|-1.1810400|-0.3309206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338005|BC047385|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|392|NULL|-1.1810400|-0.3309206	chr22	 27676303	 27679302	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45152_PI429285431	10.147163	P	10.044551	P	1.07371566650714	0	lncRNA	49630-2_{3001..3872}	"gi|291463263|ref|NR_033403.1| Homo sapiens bone morphogenetic protein 1 (BMP1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|291463263|ref|NR_033403.1| Homo sapiens bone morphogenetic protein 1 (BMP1), transcript variant 4, non-coding RNA"	Chr8	 22025653	 22026524	+	649	NR_033403.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003252	0.87643087	A	0.87725693	A	0.999427582733337	0	lncRNA	TCONS_00006992	NA	NA	NA	NA	XLOC_002841	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002841), lincRNA [TCONS_00006992]"	chr3:141579815-141579874	hs|3q23	Agilent_HUMAN_G3V2	TCONS_00006992	TCONS_00006992	chr3	141579815	141579874	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013444	0.87663466	A	0.8775665	A	0.999354306281234	0	lncRNA	ENST00000426356	NA	NA	NA	NA	XLOC_l2_013886	NA	ENST00000426356	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013886), lincRNA [TCONS_l2_00027413]"	chr7:68734827-68734768	hs|7q11.22	Agilent_HUMAN_G3V2	ENST00000426356	ENST00000426356	chr7	 68734768	 68734827	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38848_PI429285431	9.909607	P	8.779628	P	2.1885555454764	0	lncRNA	39840-1_{1..1928}	n384686|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kej.2||2.8731000|-0.3338021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384686|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kej.2||2.8731000|-0.3338021	chr5	 75465910	 75467837	-	NA	NA	NA	NA	SV2C	NA	chr5:75455910-75480161	inner
LNCA_21_P0008914	2.4616299	A	3.258991	P	0.57540070746136	0	lncRNA	TCONS_00024351	NA	NA	NA	NA	XLOC_011673	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011673), lincRNA [TCONS_00024351]"	chr16:24247438-24249241	hs|16p12.1	Agilent_HUMAN_G3V2	TCONS_00024351	TCONS_00024351	chr16	 24247438	 24249241	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47074_PI429285431	4.23827	P	3.9246864	P	1.24279091475891	0	lncRNA	51158-2_{3001..5023}	"gi|341604759|ref|NR_040546.1| Homo sapiens phosphodiesterase 4C, cAMP-specific (PDE4C), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|341604759|ref|NR_040546.1| Homo sapiens phosphodiesterase 4C, cAMP-specific (PDE4C), transcript variant 4, non-coding RNA"	Chr19	 18321771	 18323793	-	5143	NR_040546.1	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40"	NA	inter
CUST_1767_PI429285431	0.9553128	A	0.96427643	A	0.993806146624141	0	lncRNA	1753-1_{1..732}	"transcript_id ""ENST00000512898.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512898.1"" | genecode_v17"	chr4	 55702327	 55703058	-	ENSG00000249727.1	ENST00000512898.1	RP11-273B19.2	RP11-273B19.2-001	NA	NA	NA	inter
LNCA_21_P0010994	0.8762341	A	0.87964416	A	0.997639117801952	0	lncRNA	TCONS_l2_00004724	NA	NA	NA	NA	XLOC_l2_002441	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002441), lincRNA [TCONS_l2_00004724]"	chr11:94386304-94386363	hs|11q21	Agilent_HUMAN_G3V2	TCONS_l2_00004724	TCONS_l2_00004724	chr11	 94386304	 94386363	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007970	5.4956036	P	5.97888	P	0.71535119569324	0	lncRNA	CR627049	NA	CR627049	NA	Hs.528451	XLOC_010505	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010505), lincRNA [TCONS_00021602]"	chr13:112855044-112855103	hs|13q34	Agilent_HUMAN_G3V2	CR627049	CR627049	chr13	112855044	112855103	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41785_PI429285431	0.89755934	A	0.9259721	A	0.980498439888285	0	lncRNA	43362-1_{1..94}	ENST00000384920 ncrna:miRNA chromosome:GRCh37:2:32757220:32757313:1 gene:ENSG00000207653 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384920 ncrna:miRNA chromosome:GRCh37:2:32757220:32757313:1 gene:ENSG00000207653 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 32757220	 32757313	+	ENSG00000207653	ENST00000384920	NA	NA	BIRC6	NA	chr2:32747220-32767313	inner
CUST_19939_PI429285431	0.87273633	A	1.6292138	A	0.591939866871677	0	lncRNA	21594-1_{1..580}	lnc-FAM110B-8:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM110B-8:10	chr8	 58133148	 58133727	+	lnc-FAM110B-8	lnc-FAM110B-8:10	ENSG00000253301.1	RP11-513O17.2	NA	NA	NA	inter
CUST_10058_PI429285431	0.87957704	A	0.87837726	A	1.00083197001951	0	lncRNA	11583-2_{3001..3696}	lnc-FAM22B-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM22B-1:6	chr10	 81439224	 81439919	+	lnc-FAM22B-1	lnc-FAM22B-1:6	XLOC_008528	linc-C10orf57-5	NA	NA	NA	inter
CUST_36239_PI429285431	7.004461	P	5.9356117	P	2.09775951745131	0	lncRNA	37486-3_{6001..8797}	n344778|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_327|NULL|-1.3305700|-0.3589219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344778|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_327|NULL|-1.3305700|-0.3589219	chr15	 41582183	 41584979	+	NA	NA	NA	NA	CHP	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70chr15:41566183-41574085"	NA	inter
CUST_43377_PI429285431	1.2187482	A	0.9100354	A	1.23860210240259	0	lncRNA	48191-1_{1..778}	"gi|310118500|ref|XR_109863.1| PREDICTED: Homo sapiens GSQS6193 (LOC100130071), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118500|ref|XR_109863.1| PREDICTED: Homo sapiens GSQS6193 (LOC100130071), misc_RNA"	NA	NA	NA	NA	NA	XR_109863.1	NA	NA	NA	NA	NA	Unknown
CUST_8795_PI429285431	7.3653507	P	7.7221375	P	0.780901884964076	0	lncRNA	10335-1_{1..1565}	lnc-STYXL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STYXL1-1:1	chr7	 75907057	 75908621	-	lnc-STYXL1-1	lnc-STYXL1-1:1	ENSG00000248661	ENST00000514862	SRRM3	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40chr7:75897057-75916605"	NA	inner
CUST_43070_PI429285431	1.3365012	A	1.7615583	A	0.744809252393037	0	lncRNA	47087-1_{1..138}	ENST00000408591 ncrna:snRNA chromosome:GRCh37:3:52594586:52594723:1 gene:ENSG00000221518 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408591 ncrna:snRNA chromosome:GRCh37:3:52594586:52594723:1 gene:ENSG00000221518 gene_biotype:snRNA transcript_biotype:snRNA	chr3	 52594586	 52594723	+	ENSG00000221518	ENST00000408591	NA	NA	PBRM1	NA	chr3:52584586-52604723	inner
CUST_48678_PI429285431	0.9055544	A	0.92875975	A	0.984043945440694	0	lncRNA	52521-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00013850 range=chr2:101218847-101225992 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013850 range=chr2:101218847-101225992 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	101218847	101221846	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60"	NA	inter
CUST_44556_PI429285431	5.747116	P	4.5278835	P	2.3282282481988	0	lncRNA	49140-1_{1..2083}	"gi|376319213|ref|NR_046350.1| Homo sapiens peptidylprolyl isomerase domain and WD repeat containing 1 (PPWD1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|376319213|ref|NR_046350.1| Homo sapiens peptidylprolyl isomerase domain and WD repeat containing 1 (PPWD1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_046350.1	NA	NA	NA	NA	NA	Unknown
CUST_9_PI429201921	4.7479606	P	3.766482	P	1.97448800026023	0	lncRNA	9-1_{1..737}	TC22001235.hg.1	TCONS_l2_00017908-XLOC_l2_009475 // Broad TUCP // linc-SLC7A4-4 chr22:-:21570319-21571057 // chr22 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr22:-:21570319-21571057	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00017908-XLOC_l2_009475	linc-SLC7A4-4	chr22	 21570319	 21571057	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9230_PI429285431	0.91100174	A	2.766464	A	0.276344104563558	0	lncRNA	10740-1_{1..2727}	lnc-AC114546.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC114546.1-3:1	chr15	 35102697	 35105423	+	lnc-AC114546.1-3	lnc-AC114546.1-3:1	ENSG00000250007	AC087457.1	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.22;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50"	NA	inter
CUST_22626_PI429285431	1.1231549	A	0.9215814	A	1.14995188595579	0	lncRNA	24212-1_{1..1116}	lnc-SFTA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SFTA3-1:1	chr14	 36988673	 36989788	-	lnc-SFTA3-1	lnc-SFTA3-1:1	ENSG00000257520.1	RP11-896J10.3	SFTA3	NA	chr14:36978673-36982990	inner
CUST_31573_PI429285431	1.1858786	A	1.0711415	A	1.08277771470307	0	lncRNA	33330-1_{1..2557}	n338073|AK055083|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|460|NULL|-0.9640970|-0.2407887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338073|AK055083|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|460|NULL|-0.9640970|-0.2407887	chr15	 81353293	 81355849	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20223_PI429285431	1.1422743	A	1.6455097	A	0.705522794382766	0	lncRNA	21867-1_{1..2907}	lnc-SLC6A12-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SLC6A12-3:1	chr12	   258245	   261151	-	lnc-SLC6A12-3	lnc-SLC6A12-3:1	ENSG00000249695.2	RP11-598F7.4	IQSEC3	"hg19_refFlat_IQSEC3:range=chr12:176049-2841995'pad=0,hg19_refFlat_IQSEC3:range=chr12:176049-2841995'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.90;hg19_refFlat_IQSEC3:range=chr12:247439-2804875'pad=0,hg19_refFlat_IQSEC3:range=chr12:247439-2804875'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.90chr12:248245-268335"	NA	inner
CUST_43620_PI429285431	7.712509	P	7.2589726	P	1.36939286439903	0	lncRNA	48381-1_{1..3000}	"gi|387849026|ref|NR_048579.1| Homo sapiens ADAM metallopeptidase domain 15 (ADAM15), transcript variant 12, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387849026|ref|NR_048579.1| Homo sapiens ADAM metallopeptidase domain 15 (ADAM15), transcript variant 12, non-coding RNA"	Chr1	155023748	155026747	+	8751	NR_048579.1	NA	NA	NA	NA	NA	inter
CUST_32180_PI429285431	7.0598116	P	6.884325	P	1.12934525226092	0	lncRNA	33879-1_{1..2239}	n338752|AK129746|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1173|NULL|0.3750050|-0.2476757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338752|AK129746|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1173|NULL|0.3750050|-0.2476757	chr19	 48164913	 48167151	-	NA	NA	NA	NA	GLTSCR1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00chr19:48154913-48177152"	NA	inner
CUST_11318_PI429285431	2.4806113	A	2.696149	A	0.861225116775572	0	lncRNA	12881-1_{1..1073}	lnc-INTS9-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INTS9-1:7	chr8	 28555489	 28556561	-	lnc-INTS9-1	lnc-INTS9-1:7	XLOC_007033	linc-FBXO16-2	EXTL3	NA	chr8:28559153-28566246	inter
CUST_34391_PI429285431	1.612898	A	1.8086817	A	0.873098482999481	0	lncRNA	35875-1_{1..2064}	n341261|BC037783|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3729|NULL|-0.1374240|-0.2789155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341261|BC037783|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3729|NULL|-0.1374240|-0.2789155	chr7	 77286976	 77289039	-	NA	NA	NA	NA	RSBN1L	NA	chr7:77325743-77335582	inter
CUST_294_PI429285431	0.89749974	A	1.324521	A	0.743795920329933	0	lncRNA	286-1_{1..543}	"transcript_id ""ENST00000418041.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418041.1"" | genecode_v17"	chr1	 81001440	 81001982	+	ENSG00000234184.1	ENST00000418041.1	RP5-887A10.1	RP5-887A10.1-002	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20"	NA	inter
LNCA_21_P0001046	0.88534945	A	0.8987057	A	0.99078487489613	0	lncRNA	ENST00000435554	NA	NA	NA	NA	XLOC_000510	NA	ENST00000435554	NA	NA	"BROAD Institute lincRNA (XLOC_000510), lincRNA [TCONS_00000363]"	chr1:194320184-194320243	hs|1q31.3	Agilent_HUMAN_G3V2	ENST00000435554	ENST00000435554	chr1	194320184	194320243	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42348_PI429285431	6.8623466	P	7.016491	P	0.898665174305144	0	lncRNA	45010-1_{1..125}	ENST00000516384 ncrna:snoRNA chromosome:GRCh37:20:41933195:41933319:1 gene:ENSG00000252193 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516384 ncrna:snoRNA chromosome:GRCh37:20:41933195:41933319:1 gene:ENSG00000252193 gene_biotype:snoRNA transcript_biotype:snoRNA	chr20	 41933195	 41933319	+	ENSG00000252193	ENST00000516384	NA	NA	NA	NA	NA	inter
CUST_47290_PI429285431	0.8793731	A	0.88669074	A	0.994940640358453	0	lncRNA	51359-1_{1..1151}	"gi|372624393|ref|NR_045983.1| Homo sapiens zinc finger protein 663 (ZNF663), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372624393|ref|NR_045983.1| Homo sapiens zinc finger protein 663 (ZNF663), non-coding RNA"	Chr20	 45085132	 45086282	-	100130934	NR_045983.1	NA	NA	NA	NA	NA	inter
CUST_11557_PI429285431	1.373625	A	0.9095061	A	1.37947460681761	0	lncRNA	13131-1_{1..285}	lnc-CD83-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD83-3:1	chr6	 14509054	 14509338	+	lnc-CD83-3	lnc-CD83-3:1	XLOC_005181	linc-JARID2-3	NA	NA	NA	inter
CUST_14472_PI429285431	4.933926	P	5.017214	P	0.943903972200793	0	lncRNA	16135-1_{1..316}	lnc-AC069257.9.1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC069257.9.1-2:5	chr3	195886771	195887086	+	lnc-AC069257.9.1-2	lnc-AC069257.9.1-2:5	XLOC_003002	linc-OSTalpha-1	NA	NA	NA	inter
CUST_7351_PI429285431	1.8238864	A	3.41289	P	0.332400947594387	0	lncRNA	8997-1_{1..983}	lnc-C1orf200-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C1orf200-1:1	chr1	  9747393	  9748375	-	lnc-C1orf200-1	lnc-C1orf200-1:1	ENSG00000231789	RP11-558F24.4	PIK3CD	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chr1:9737393-9757632"	NA	inner
CUST_36245_PI429285431	5.6975436	P	6.132903	P	0.739509507214368	0	lncRNA	37490-1_{1..524}	n344782|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_331|NULL|-1.4761000|-0.2237207	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344782|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_331|NULL|-1.4761000|-0.2237207	chr2	 48274642	 48275165	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1504_PI429285431	1.3806936	A	0.9068635	A	1.38879157411414	0	lncRNA	1491-1_{1..1958}	"transcript_id ""ENST00000492569.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000492569.1"" | genecode_v17"	chr3	153102723	153104680	-	ENSG00000238755.2	ENST00000492569.1	RP11-292E2.3	RP11-292E2.3-001	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-21.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.31"	NA	inter
CUST_16827_PI429285431	1.6227022	A	0.9197073	A	1.62788061549032	0	lncRNA	18533-1_{1..1500}	lnc-POTEF-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POTEF-3:1	chr2	130344614	130346113	-	lnc-POTEF-3	lnc-POTEF-3:1	XLOC_002318	linc-HS6ST1-5	NA	NA	NA	inter
CUST_12977_PI429285431	4.7470536	P	3.8641589	P	1.84407163507853	0	lncRNA	14603-1_{1..2581}	lnc-FAM75A4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-FAM75A4-2:1	chr9	 41954749	 41957329	-	lnc-FAM75A4-2	lnc-FAM75A4-2:1	XLOC_007690	linc-FAM75A7-3	NA	NA	NA	inter
CUST_17759_PI429285431	0.92168593	A	1.4298525	A	0.703115415303711	0	lncRNA	19491-1_{1..318}	lnc-PDE5A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE5A-1:1	chr4	120578273	120578590	-	lnc-PDE5A-1	lnc-PDE5A-1:1	XLOC_004057	linc-PDE5A-2	NA	NA	NA	inter
LNCA_21_P0006064	0.8754472	A	0.880461	A	0.996530730536244	0	lncRNA	ENST00000453789	NA	NA	NA	NA	XLOC_007630	NA	ENST00000453789	NA	NA	"BROAD Institute lincRNA (XLOC_007630), lincRNA [TCONS_00015785]"	chr9:1041281-1041222	hs|9p24.3	Agilent_HUMAN_G3V2	ENST00000453789	ENST00000453789	chr9	  1041222	  1041281	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010715	0.8916661	A	0.87929666	A	1.00861070311889	0	lncRNA	AK310315	NA	AK310315	NA	Hs.532720	CYMP	chymosin pseudogene	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000354), lincRNA [TCONS_l2_00002129]"	chr1:111027204-111027468	hs|1p13.3	Agilent_HUMAN_G3V2	AK310315	AK310315	chr1	111027204	111027468	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16443_PI429285431	0.88929087	A	1.1230323	A	0.85042656586482	0	lncRNA	18142-1_{1..524}	lnc-IGSF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGSF1-1:1	chrX	130826472	130826995	-	lnc-IGSF1-1	lnc-IGSF1-1:1	XLOC_008237	linc-IGSF1-3	NA	NA	NA	inter
CUST_8459_PI429285431	4.783617	P	3.2124572	A	2.97143495384758	0	lncRNA	10027-1_{1..347}	lnc-WDR74-1:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR74-1:18	chr11	 62622896	 62623242	-	lnc-WDR74-1	lnc-WDR74-1:18	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62632939	inter
CUST_49508_PI429285431	7.794942	P	7.423338	P	1.29379047799961	0	lncRNA	53299-1_{1..480}	hg19_lincRNAsTranscripts_TCONS_l2_00024667 range=chr6:26839962-26856979 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024667 range=chr6:26839962-26856979 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 26839962	 26840441	-	NA	NA	NA	NA	LOC100507141	NA	chr6:26864941-26865525	inter
CUST_12351_PI429285431	0.8970456	A	0.9075022	A	0.992778240329517	0	lncRNA	13963-1_{1..525}	lnc-C14orf118-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf118-1:4	chr14	 76729543	 76730067	+	lnc-C14orf118-1	lnc-C14orf118-1:4	XLOC_010879	linc-ESRRB-1	NA	NA	NA	inter
CUST_24934_PI429285431	9.328793	P	9.5608	P	0.851449576479809	0	lncRNA	26474-1_{1..536}	lnc-CCL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CCL1-1:1	chr17	 32445366	 32445901	-	lnc-CCL1-1	lnc-CCL1-1:1	ENSG00000265775.1	CTC-304I17.3	ACCN1	NA	chr17:32435366-32455901	inner
CUST_38306_PI429285431	8.182211	P	6.4191246	P	3.39423487439129	0	lncRNA	39357-1_{1..1936}	n381983|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uoa.1||-0.3944270|-0.3952782	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381983|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uoa.1||-0.3944270|-0.3952782	chr13	 21946715	 21948650	-	NA	NA	NA	NA	ZDHHC20	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-94.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60chr13:21936715-21958651"	NA	inner
CUST_25174_PI429285431	4.410421	P	4.489212	P	0.946850789455193	0	lncRNA	26705-1_{1..459}	lnc-IL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL3-1:1	chr5	131348764	131349222	+	lnc-IL3-1	lnc-IL3-1:1	ENSG00000231585.1	AC034228.2	ACSL6	"hg19_refFlat_ACSL6:range=chr5:131289927-1313472465'pad=0,hg19_refFlat_ACSL6:range=chr5:131289927-1313472465'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50chr5:131338764-131347761"	NA	inter
CUST_27498_PI429285431	0.9051956	A	0.91450876	A	0.993565400675122	0	lncRNA	29072-1_{1..473}	n324679|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000128923|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000128923|-0.1337610|-0.2100088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324679|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000128923|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000128923|-0.1337610|-0.2100088	chr22	 30689343	 30689815	+	NA	NA	NA	NA	TBC1D10A	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-61.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-26.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-30.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-23.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40chr22:30687979-30706387"	NA	inner
CUST_22662_PI429285431	0.8916051	A	0.8859335	A	1.00393899106255	0	lncRNA	24246-1_{1..407}	lnc-HERC1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HERC1-1:10	chr15	 63881028	 63881434	-	lnc-HERC1-1	lnc-HERC1-1:10	ENSG00000259248.1	RP11-265M18.2	USP3	"hg19_refFlat_USP3:range=chr15:63796939-638830255'pad=0,hg19_refFlat_USP3:range=chr15:63796939-638830255'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30chr15:63871028-63883663"	NA	inter
CUST_26288_PI429285431	0.89205873	A	1.3064048	A	0.750359532839768	0	lncRNA	27794-1_{1..281}	lnc-FRS3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FRS3-1:1	chr6	 41764264	 41764544	-	lnc-FRS3-1	lnc-FRS3-1:1	ENSG00000251403.1	RP11-298J23.6	USP49	NA	chr6:41765383-41774356	inter
CUST_49204_PI429285431	1.0471408	A	0.87532115	A	1.12647839965085	0	lncRNA	53023-6_{15001..17743}	hg19_lincRNAsTranscripts_TCONS_l2_00020851 range=chr4:159178384-159202705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020851 range=chr4:159178384-159202705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	159193384	159196126	+	NA	NA	NA	NA	TMEM144	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.81;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60chr4:159168384-159176439"	NA	inter
CUST_9277_PI429285431	0.8771317	A	1.3693422	A	0.710934966995174	0	lncRNA	10782-1_{1..535}	lnc-PANK1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PANK1-3:1	chr10	 91584940	 91585474	-	lnc-PANK1-3	lnc-PANK1-3:1	XLOC_008899	linc-PANK1-5	NA	NA	NA	inter
CUST_41125_PI429285431	0.8799525	A	0.88571143	A	0.996016170495043	0	lncRNA	41899-1_{1..72}	ENST00000577899 ncrna:miRNA chromosome:GRCh37:11:11678198:11678269:-1 gene:ENSG00000266645 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577899 ncrna:miRNA chromosome:GRCh37:11:11678198:11678269:-1 gene:ENSG00000266645 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 11678198	 11678269	-	ENSG00000266645	ENST00000577899	NA	NA	NA	NA	NA	inter
CUST_7697_PI429285431	0.88215274	A	1.3513471	A	0.722367874943914	0	lncRNA	9330-1_{1..1936}	lnc-CLRN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLRN2-1:1	chr4	 17486010	 17487945	+	lnc-CLRN2-1	lnc-CLRN2-1:1	ENSG00000251507	XLOC_003471	QDPR	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00chr4:17488016-17497209"	NA	inter
LNCA_21_P0003694	0.8770802	A	2.6676826	A	0.289051326855211	0	lncRNA	TCONS_00008369	NA	NA	NA	NA	XLOC_003825	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003825), lincRNA [TCONS_00008369]"	chr4:188134722-188134781	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008369	TCONS_00008369	chr4	188134722	188134781	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39842_PI429285431	6.203458	P	6.39274	P	0.877042098746168	0	lncRNA	40745-1_{1..3000}	n406457|NR_023348|lncRNA|Homosapiens||RefGeneNoncode|NR_023348||9.6036700|-0.1488921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406457|NR_023348|lncRNA|Homosapiens||RefGeneNoncode|NR_023348||9.6036700|-0.1488921	chr16	 90089007	 90092006	+	NA	NA	NA	NA	DBNDD1	NA	chr16:90079007-90085937	inter
CUST_38131_PI429285431	5.534167	P	4.4578915	P	2.10858546793741	0	lncRNA	39203-1_{1..3000}	n381272|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gch.1||1.3478900|-0.3558350	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381272|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gch.1||1.3478900|-0.3558350	chr1	162751900	162754899	+	NA	NA	NA	NA	DDR2	NA	chr1:162741900-162750255	inter
LNCA_19_P00317759	4.6175265	P	4.8868265	P	0.829722031803731	0	lncRNA	EU250746	NA	EU250746	NA	Hs.431753	XLOC_000515	NA	NA	THC2663352	NA	"BROAD Institute lincRNA (XLOC_000515), lincRNA [TCONS_00000061]"	chr1:200443520-200443579	hs|1q32.1	Agilent_HUMAN_G3V2	EU250746	EU250746	chr1	200443520	200443579	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43732_PI429285431	0.91251373	A	0.91690403	A	0.996961501541941	0	lncRNA	48477-1_{1..2275}	"gi|397138924|ref|XR_159116.1| PREDICTED: Homo sapiens uncharacterized LOC100996486 (LOC100996486), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138924|ref|XR_159116.1| PREDICTED: Homo sapiens uncharacterized LOC100996486 (LOC100996486), misc_RNA"	NA	NA	NA	NA	NA	XR_159116.1	NA	NA	NA	"hg19_refFlat_FBXO25:range=chr8:363080-4188045'pad=0,hg19_refFlat_FBXO25:range=chr8:363080-4188045'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.30"	NA	Unknown
CUST_32879_PI429285431	6.5415616	P	6.578134	P	0.97496855874399	0	lncRNA	34507-1_{1..1967}	n339545|BC030022|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1987|NULL|-0.6304250|-0.2181923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339545|BC030022|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1987|NULL|-0.6304250|-0.2181923	chr21	 47649440	 47651406	+	NA	NA	NA	NA	LSS	"hg19_refFlat_MCM3AP:range=chr21:47655182-477052005'pad=0,hg19_refFlat_MCM3AP:range=chr21:47655182-477052005'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00chr21:47639440-47648738"	NA	inner
CUST_25914_PI429285431	3.8285518	P	4.0541315	P	0.855251301758084	0	lncRNA	27433-1_{1..2024}	lnc-B4GALT6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-B4GALT6-1:2	chr18	 29135926	 29137949	-	lnc-B4GALT6-1	lnc-B4GALT6-1:2	ENSG00000264859.1	RP11-75N4.2	DSG2	"hg19_refFlat_DSG2:range=chr18:29078215-291267065'pad=0,hg19_refFlat_DSG2:range=chr18:29078215-291267065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00chr18:29125926-29128814"	NA	inter
CUST_22323_PI429285431	0.89173263	A	0.88717	A	1.00316758033409	0	lncRNA	23922-1_{1..321}	lnc-TPP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TPP2-1:2	chr13	103025774	103026094	+	lnc-TPP2-1	lnc-TPP2-1:2	ENSG00000234445.1	FGF14-AS1	FGF14	NA	chr13:103015774-103036016	inner
CUST_21798_PI429285431	2.0478697	A	1.9227791	A	1.09057621775748	0	lncRNA	23408-1_{1..498}	lnc-PLCG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLCG1-1:1	chr20	 39825317	 39825814	+	lnc-PLCG1-1	lnc-PLCG1-1:1	ENSG00000225915.2	RP3-511B24.5	ZHX3	NA	chr20:39815317-39835427	inner
CUST_44624_PI429285431	5.7863936	P	6.056255	P	0.829399222535648	0	lncRNA	49190-1_{1..766}	"gi|410170493|ref|XR_171088.1| PREDICTED: Homo sapiens uncharacterized LOC101060007 (LOC101060007), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170493|ref|XR_171088.1| PREDICTED: Homo sapiens uncharacterized LOC101060007 (LOC101060007), misc_RNA"	NA	NA	NA	NA	NA	XR_171088.1	NA	NA	NA	NA	NA	Unknown
CUST_16770_PI429285431	1.2122545	A	0.9020616	A	1.23987346997125	0	lncRNA	18478-1_{1..1257}	lnc-C1orf31-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf31-7:2	chr1	234855320	234856576	+	lnc-C1orf31-7	lnc-C1orf31-7:2	XLOC_000625	linc-GGPS1-3	NA	NA	NA	inter
CUST_26599_PI429285431	2.49929	A	2.5148804	A	0.989251738027516	0	lncRNA	28102-1_{1..405}	lnc-PDZD9-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDZD9-1:3	chr16	 22098419	 22098823	-	lnc-PDZD9-1	lnc-PDZD9-1:3	ENSG00000260277.1	RP11-101E7.2	C16orf52	NA	chr16:22088419-22095975	inter
CUST_19972_PI429285431	6.9506063	P	6.872013	P	1.05598789727641	0	lncRNA	21625-1_{1..742}	lnc-NRIP2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NRIP2-5:1	chr12	  2799973	  2800714	-	lnc-NRIP2-5	lnc-NRIP2-5:1	ENSG00000246627.2	CACNA1C-AS1	CACNA1C	"hg19_refFlat_CACNA1C:range=chr12:2162729-28003655'pad=0,hg19_refFlat_CACNA1C:range=chr12:2162729-28003655'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.00chr12:2789973-2807115"	NA	inner
CUST_16093_PI429285431	1.9867051	A	0.9210709	A	2.09308978696762	0	lncRNA	17798-1_{1..535}	lnc-STAC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STAC-1:1	chr3	 36351239	 36351773	+	lnc-STAC-1	lnc-STAC-1:1	XLOC_002614	linc-STAC	NA	NA	NA	inter
CUST_18199_PI429285431	2.1427398	A	1.8898635	A	1.19158040134215	0	lncRNA	19934-1_{1..570}	lnc-KRTAP5-5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KRTAP5-5-1:1	chr11	  1618478	  1619047	+	lnc-KRTAP5-5-1	lnc-KRTAP5-5-1:1	ENSG00000233930	RP13-25N22.1	KRTAP5-3	NA	chr11:1628795-1628813	inner
LNCA_21_P0009930	2.1861584	A	0.92775905	A	2.39230171094144	0	lncRNA	THC2758825	NA	NA	NA	NA	XLOC_013448	NA	NA	THC2758825	NA	"BROAD Institute lincRNA (XLOC_013448), lincRNA [TCONS_00028097]"	chr20:005466837-005466896	hs|20p12.3	Agilent_HUMAN_G3V2	THC2758825	THC2758825	chr20	  5466837	  5466896	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3555_PI429285431	7.8341084	P	8.16877	P	0.792970114665577	0	lncRNA	3525-1_{1..566}	"transcript_id ""ENST00000458346.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458346.1"" | genecode_v17"	chr9	132253271	132253836	+	ENSG00000204054.6	ENST00000458346.1	RP11-492E3.1	RP11-492E3.1-008	NA	NA	NA	inter
CUST_44699_PI429285431	12.5788765	P	12.199842	P	1.30047124509684	0	lncRNA	49256-1_{1..342}	"gi|39573714|ref|NR_001590.1| Homo sapiens interferon induced transmembrane protein 4 pseudogene (IFITM4P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|39573714|ref|NR_001590.1| Homo sapiens interferon induced transmembrane protein 4 pseudogene (IFITM4P), non-coding RNA"	NT_167247.1	  1019118	  1019459	-	340198	NR_001590.1	NA	NA	NA	NA	NA	Unknown
CUST_43649_PI429285431	1.7003559	A	1.2262595	A	1.38904794799832	0	lncRNA	48406-1_{1..1572}	"gi|78126140|ref|NR_002595.1| Homo sapiens ribosomal protein L31 pseudogene 11 (RPL31P11), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|78126140|ref|NR_002595.1| Homo sapiens ribosomal protein L31 pseudogene 11 (RPL31P11), non-coding RNA"	NA	NA	NA	NA	NA	NR_002595.1	NA	NA	NA	NA	NA	Unknown
CUST_39478_PI429285431	0.88856906	A	0.90352184	A	0.989689048813303	0	lncRNA	40424-1_{1..3000}	n387107|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010yij.1||-1.0745000|-0.1074776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n387107|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010yij.1||-1.0745000|-0.1074776	chr1	   222731	   225730	-	NA	NA	NA	NA	LOC100288646	"hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.16chr1:327463-342507"	NA	inter
LNCA_21_P0014174	6.063018	P	5.465535	P	1.5130744748343	0	lncRNA	XR_108698	XR_108698	XR_108698	NA	NA	LOC100507294	uncharacterized LOC100507294	NA	THC2483992	NA	"PREDICTED: Homo sapiens hypothetical LOC100507294 (LOC100507294), miscRNA [XR_108698]"	chr6:3287230-3287289	hs|6p25.2	Agilent_HUMAN_G3V2	XR_108698	XR_108698	chr6	  3287230	  3287289	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28482_PI429285431	1.3728836	A	1.1234671	A	1.18872623579681	0	lncRNA	30149-1_{1..583}	n325824|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000104867|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000104867|-1.1271300|-0.1844853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325824|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000104867|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000104867|-1.1271300|-0.1844853	chr11	116015348	116015930	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28651_PI429285431	0.8804646	A	0.8853431	A	0.996624192374411	0	lncRNA	30343-1_{1..596}	n326030|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047377|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047377|-0.1922200|-0.2225592	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326030|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047377|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047377|-0.1922200|-0.2225592	chr10	 29121503	 29122098	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16531_PI429285431	0.88168937	A	1.1628249	A	0.822943032537585	0	lncRNA	18230-1_{1..502}	lnc-U2SURP-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-U2SURP-3:5	chr3	142660241	142660742	+	lnc-U2SURP-3	lnc-U2SURP-3:5	XLOC_002845	linc-SR140-2	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30"	NA	inter
CUST_43113_PI429285431	0.88900137	A	0.89802086	A	0.993767667988628	0	lncRNA	47886-1_{1..116}	ENST00000516210 ncrna:snRNA chromosome:GRCh37:14:55325933:55326048:1 gene:ENSG00000252019 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516210 ncrna:snRNA chromosome:GRCh37:14:55325933:55326048:1 gene:ENSG00000252019 gene_biotype:snRNA transcript_biotype:snRNA	chr14	 55325933	 55326048	+	ENSG00000252019	ENST00000516210	NA	NA	GCH1	NA	chr14:55315933-55336048	inner
CUST_2163_PI429285431	0.9098058	A	1.8044304	A	0.537887139262406	0	lncRNA	2155-1_{1..384}	"transcript_id ""ENST00000511861.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511861.1"" | genecode_v17"	chr5	 55354877	 55355260	+	ENSG00000249236.1	ENST00000511861.1	CTD-2227I18.1	CTD-2227I18.1-001	NA	NA	NA	inter
CUST_48943_PI429285431	3.1410983	A	3.3327465	P	0.875604819179104	0	lncRNA	52785-1_{1..780}	hg19_lincRNAsTranscripts_TCONS_l2_00018962 range=chr3:158487101-158502276 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018962 range=chr3:158487101-158502276 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	158487101	158487880	+	NA	NA	NA	NA	NA	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30"	NA	inter
CUST_25133_PI429285431	0.8868702	A	0.8944718	A	0.994744829369939	0	lncRNA	26671-1_{1..346}	lnc-TNS3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TNS3-1:2	chr7	 47118675	 47119020	-	lnc-TNS3-1	lnc-TNS3-1:2	ENSG00000229192.2	AC004870.3	NA	NA	NA	inter
CUST_37962_PI429285431	7.134437	P	7.0648003	P	1.04945237685898	0	lncRNA	39050-1_{1..724}	n346509|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2059|NULL|-1.2817100|-0.1958698	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346509|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2059|NULL|-1.2817100|-0.1958698	chr7	 46017948	 46018671	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11290_PI429285431	1.9365866	A	1.0793964	A	1.81150677317606	0	lncRNA	12851-1_{1..394}	lnc-DHX37-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-5:2	chr12	126650625	126651018	-	lnc-DHX37-5	lnc-DHX37-5:2	XLOC_010240	linc-DHX37-7	NA	NA	NA	inter
CUST_8913_PI429285431	3.9977927	P	4.3821845	P	0.76610189767725	0	lncRNA	10448-1_{1..2554}	lnc-PRKACG-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PRKACG-2:1	chr9	 71785572	 71788125	-	lnc-PRKACG-2	lnc-PRKACG-2:1	ENSG00000250944	ENST00000505664	TJP2	"hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr9:71775572-71795971"	NA	inner
CUST_37154_PI429285431	3.1212325	P	4.0070553	P	0.541178788833827	0	lncRNA	38272-1_{1..571}	n345591|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1140|NULL|-1.4882100|-0.1655056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345591|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1140|NULL|-1.4882100|-0.1655056	chr3	 72790081	 72790651	+	NA	NA	NA	NA	SHQ1	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40chr3:72798428-72800652"	NA	inter
CUST_20218_PI429285431	1.5093541	A	0.88986593	A	1.53633003537534	0	lncRNA	21862-1_{1..385}	lnc-PDZD9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDZD9-1:2	chr16	 22101344	 22101728	-	lnc-PDZD9-1	lnc-PDZD9-1:2	ENSG00000260277.1	RP11-101E7.2	C16orf52	NA	chr16:22091344-22095975	inter
CUST_46589_PI429285431	1.033037	A	1.0602685	A	0.981301588060929	0	lncRNA	50772-1_{1..563}	"gi|310123444|ref|XR_109254.1| PREDICTED: Homo sapiens uncharacterized LOC100287628, transcript variant 1 (LOC100287628), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123444|ref|XR_109254.1| PREDICTED: Homo sapiens uncharacterized LOC100287628, transcript variant 1 (LOC100287628), misc_RNA"	NA	NA	NA	NA	NA	XR_109254.1	NA	NA	NA	NA	NA	Unknown
CUST_6614_PI429285431	5.4297166	P	5.787724	P	0.780241478079302	0	lncRNA	6561-1_{1..513}	"transcript_id ""ENST00000594562.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594562.1"" | genecode_v17"	chr19	 57989067	 57989579	+	ENSG00000268266.1	ENST00000594562.1	AC003005.2	AC003005.2-002	ZNF772	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.21;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80chr19:57979067-57988938"	NA	inter
CUST_34763_PI429285431	0.8828413	A	0.8929046	A	0.993048923251571	0	lncRNA	36203-1_{1..2199}	n341671|AK124280|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4142|NULL|-1.2057000|-0.3522759	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341671|AK124280|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4142|NULL|-1.2057000|-0.3522759	chr9	 31578601	 31580799	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25142_PI429285431	1.7347629	A	0.8731769	A	1.81703473645866	0	lncRNA	26680-1_{1..494}	lnc-ITPR2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITPR2-2:3	chr12	 26424596	 26425089	-	lnc-ITPR2-2	lnc-ITPR2-2:3	ENSG00000255750.1	RP11-283G6.5	NA	"hg19_refFlat_SSPN:range=chr12:26377256-263840095'pad=0,hg19_refFlat_SSPN:range=chr12:26377256-263840095'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_SSPN:range=chr12:26348606-263840095'pad=0,hg19_refFlat_SSPN:range=chr12:26348606-263840095'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40"	NA	inter
CUST_9617_PI429285431	6.349027	P	6.294376	P	1.03860782498385	0	lncRNA	11133-1_{1..1048}	lnc-BNIP3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BNIP3-2:1	chr10	133733142	133734189	-	lnc-BNIP3-2	lnc-BNIP3-2:1	XLOC_009000	linc-TCERG1L-3	NA	NA	NA	inter
CUST_17232_PI429285431	0.9054223	A	0.90923	A	0.997364183361488	0	lncRNA	18950-1_{1..913}	lnc-SOD3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOD3-3:1	chr4	 23783726	 23784638	+	lnc-SOD3-3	lnc-SOD3-3:1	XLOC_003474	linc-SOD3-2	PPARGC1A	NA	chr4:23793644-23794409	inter
CUST_50418_PI429285431	0.90199435	A	0.9079222	A	0.995899557352685	0	lncRNA	54122-1_{1..1139}	hg19_lincRNAsTranscripts_TCONS_l2_00030150 range=chrX:13346697-13348212 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030150 range=chrX:13346697-13348212 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 13346697	 13347835	+	NA	NA	NA	NA	ATXN3L	NA	chrX:13336766-13338518	inter
CUST_51104_PI429285431	7.5389977	P	7.3400135	P	1.14788984241176	0	lncRNA	54742-2_{3001..3414}	hg19_lincRNAsTranscripts_TCONS_l2_00006925 range=chr13:77558949-77564770 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006925 range=chr13:77558949-77564770 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 77561949	 77562362	+	NA	NA	NA	NA	CLN5	NA	chr13:77566059-77574770	inter
CUST_35229_PI429285431	0.8837609	A	0.88924533	A	0.996205699427404	0	lncRNA	36630-1_{1..766}	n342222|AF069138|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4712|NULL|-0.8570020|-0.3394684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342222|AF069138|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4712|NULL|-0.8570020|-0.3394684	chrX	 56311187	 56311952	-	NA	NA	NA	NA	KLF8	NA	chrX:56301187-56314322	inner
CUST_37192_PI429285431	0.8941724	A	0.90489507	A	0.992595163419614	0	lncRNA	38304-1_{1..3000}	n345623|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1172|NULL|-1.3169300|-0.2343698	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345623|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1172|NULL|-1.3169300|-0.2343698	chr4	  2561695	  2564694	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60"	NA	inter
CUST_19028_PI429285431	3.025837	A	3.0065124	A	1.01348490412675	0	lncRNA	20719-1_{1..802}	lnc-TRIM44-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TRIM44-1:1	chr11	 35682759	 35683560	+	lnc-TRIM44-1	lnc-TRIM44-1:1	ENSG00000254686	RP1-276E15.1	TRIM44	NA	chr11:35684353-35692887	inter
CUST_35966_PI429285431	0.9622394	A	0.8871806	A	1.05340396872259	0	lncRNA	37316-1_{1..1037}	n344591|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_139|NULL|-1.2988600|-0.2714923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344591|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_139|NULL|-1.2988600|-0.2714923	chr4	115364182	115365218	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31767_PI429285431	0.8844877	A	0.8884596	A	0.99725067504888	0	lncRNA	33507-1_{1..1742}	n338308|AK129516|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|702|NULL|-1.1565500|-0.4042779	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338308|AK129516|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|702|NULL|-1.1565500|-0.4042779	chr14	 52464892	 52466633	-	NA	NA	NA	NA	NID2	"hg19_refFlat_C14orf166:range=chr14:52456358-524712345'pad=0,hg19_refFlat_C14orf166:range=chr14:52456358-524712345'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10chr14:52471520-52476634"	NA	inner
LNCA_21_P0009029	1.118704	A	0.87932575	A	1.18048380545895	0	lncRNA	TCONS_00024647	NA	NA	NA	NA	XLOC_011938	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011938), lincRNA [TCONS_00024647]"	chr16:51529096-51529037	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00024647	TCONS_00024647	chr16	 51529037	 51529096	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009756	0.877182	A	0.87948596	A	0.99840429112129	0	lncRNA	TCONS_00027283	NA	NA	NA	NA	XLOC_013285	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013285), lincRNA [TCONS_00027283]"	chr19:28480099-28480040	hs|19q11	Agilent_HUMAN_G3V2	TCONS_00027283	TCONS_00027283	chr19	 28480040	 28480099	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52002_PI429285431	0.9075043	A	0.9835137	A	0.948678133928723	0	lncRNA	55536-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00016970 range=chr21:15033887-15050511 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016970 range=chr21:15033887-15050511 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr21	 15033887	 15036886	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37717_PI429285431	5.8863277	P	5.8766584	P	1.00672475835917	0	lncRNA	38816-1_{1..383}	n346220|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1770|NULL|-1.5038300|-0.2602216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346220|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1770|NULL|-1.5038300|-0.2602216	chr10	 81565793	 81566175	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009714	5.7627196	P	5.7922363	P	0.979748456422689	0	lncRNA	AK125858	NA	AK125858	NA	NA	XLOC_013045	NA	NA	THC2525078	NA	"BROAD Institute lincRNA (XLOC_013045), lincRNA [TCONS_00026998]"	chr19:35332748-35339924	hs|19q13.11	Agilent_HUMAN_G3V2	AK125858	AK125858	chr19	 35332748	 35339924	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49433_PI429285431	3.9716842	P	3.911396	P	1.04267402983375	0	lncRNA	53235-2_{3001..4415}	hg19_lincRNAsTranscripts_TCONS_l2_00022665 range=chr5:177377264-177387112 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022665 range=chr5:177377264-177387112 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	177380264	177381678	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90"	NA	inter
CUST_21446_PI429285431	2.428284	A	2.5753121	A	0.903108919734534	0	lncRNA	23065-1_{1..3000}	lnc-METTL19-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-METTL19-1:2	chr4	  8513558	  8516557	+	lnc-METTL19-1	lnc-METTL19-1:2	ENSG00000205959.3	RP11-689P11.2	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20"	NA	inter
CUST_46813_PI429285431	0.8925574	A	0.8741264	A	1.01285734967872	0	lncRNA	50957-1_{1..3000}	"gi|383872679|ref|NR_047559.1| Homo sapiens IKAROS family zinc finger 3 (Aiolos) (IKZF3), transcript variant 14, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|383872679|ref|NR_047559.1| Homo sapiens IKAROS family zinc finger 3 (Aiolos) (IKZF3), transcript variant 14, non-coding RNA"	Chr17	 37913968	 37916967	-	22806	NR_047559.1	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.81;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.81;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.21;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20"	NA	inter
CUST_28819_PI429285431	1.1455353	A	1.0600837	A	1.06101981540246	0	lncRNA	30528-1_{1..1126}	n326233|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090219|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090219|-1.3326000|-0.3414458	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326233|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090219|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090219|-1.3326000|-0.3414458	chr1	217462212	217463337	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38137_PI429285431	14.381003	P	13.303406	P	2.11051780444186	0	lncRNA	39208-1_{1..838}	n381285|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gji.2||-1.0856900|-0.3702081	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n381285|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gji.2||-1.0856900|-0.3702081	chr1	173833039	173833876	-	NA	NA	NA	NA	DARS2	NA	chr1:173823039-173827682	inter
CUST_19537_PI429285431	4.369767	P	4.9683456	P	0.660404291294889	0	lncRNA	21193-1_{1..481}	lnc-ECEL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ECEL1-2:1	chr2	233246185	233246665	-	lnc-ECEL1-2	lnc-ECEL1-2:1	ENSG00000224516.1	AC068134.8	ALPP	"hg19_refFlat_ALPPL2:range=chr2:233271605-2332745825'pad=0,hg19_refFlat_ALPPL2:range=chr2:233271605-2332745825'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90;hg19_refFlat_ALPP:range=chr2:233243513-2332465055'pad=0,hg19_refFlat_ALPP:range=chr2:233243513-2332465055'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90;hg19_refFlat_ALPI:range=chr2:233320910-2333238565'pad=0,hg19_refFlat_ALPI:range=chr2:233320910-2333238565'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.50chr2:233243348-233247599"	NA	inner
CUST_42628_PI429285431	0.8850192	A	0.8810905	A	1.00272687851638	0	lncRNA	45497-1_{1..134}	ENST00000365413 ncrna:snoRNA chromosome:GRCh37:6:104031010:104031143:1 gene:ENSG00000202283 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365413 ncrna:snoRNA chromosome:GRCh37:6:104031010:104031143:1 gene:ENSG00000202283 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	104031010	104031143	+	ENSG00000202283	ENST00000365413	NA	NA	NA	NA	NA	inter
CUST_47431_PI429285431	5.3337574	P	6.0061293	P	0.62747422358461	0	lncRNA	51467-1_{1..356}	"gi|213512645|ref|NR_024482.1| Homo sapiens CECR5 antisense RNA 1 (CECR5-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|213512645|ref|NR_024482.1| Homo sapiens CECR5 antisense RNA 1 (CECR5-AS1), transcript variant 2, non-coding RNA"	Chr22	 17640279	 17640634	+	100130717	NR_024482.1	NA	NA	NA	NA	NA	inter
CUST_47588_PI429285431	9.027561	P	8.791935	P	1.17741751978888	0	lncRNA	51591-1_{1..1308}	"gi|298676442|ref|NR_033772.1| Homo sapiens centromere protein V pseudogene 1 (CENPVP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298676442|ref|NR_033772.1| Homo sapiens centromere protein V pseudogene 1 (CENPVP1), non-coding RNA"	NW_004070877.1	  1423944	  1425251	+	389857	NR_033772.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007102	0.90178216	A	0.9272773	A	0.982483347581342	0	lncRNA	TCONS_00018936	NA	NA	NA	NA	XLOC_008826	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008826), lincRNA [TCONS_00018936]"	chr10:54732278-54732219	hs|10q21.1	Agilent_HUMAN_G3V2	TCONS_00018936	TCONS_00018936	chr10	 54732219	 54732278	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32462_PI429285431	3.19608	P	2.044294	A	2.22188785247077	0	lncRNA	34133-1_{1..1092}	n339064|CR600549|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1493|NULL|-0.5197510|-0.4881735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339064|CR600549|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1493|NULL|-0.5197510|-0.4881735	chr16	  6811563	  6812654	-	NA	NA	NA	NA	RBFOX1	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90chr16:6801563-6822655"	NA	inner
LNCA_21_P0014437	0.9040198	A	1.052863	A	0.901973404465675	0	lncRNA	XR_109797	XR_109797	XR_109797	NA	Hs.676556	LOC100505930	uncharacterized LOC100505930	NA	THC2612243	NA	"PREDICTED: Homo sapiens hypothetical LOC100505930 (LOC100505930), miscRNA [XR_109797]"	chr4:160061872-160061931	hs|4q32.1	Agilent_HUMAN_G3V2	XR_109797	XR_109797	chr4	160061872	160061931	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23007_PI429285431	4.234015	P	2.4658062	A	3.40630778728935	0	lncRNA	24580-2_{3001..3290}	lnc-AC007663.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AC007663.1-2:2	chr22	 20353023	 20353312	+	lnc-AC007663.1-2	lnc-AC007663.1-2:2	ENSG00000188424.4	XXbac-B33L19.3	NA	NA	NA	inter
CUST_608_PI429285431	3.2497058	P	4.5513997	P	0.405649636295989	0	lncRNA	600-1_{1..317}	"transcript_id ""ENST00000423988.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423988.1"" | genecode_v17"	chr1	235095408	235095724	-	ENSG00000238005.1	ENST00000423988.1	RP11-443B7.1	RP11-443B7.1-002	NA	NA	NA	inter
CUST_9065_PI429285431	2.8309982	A	3.1105204	A	0.823863824026336	0	lncRNA	10588-1_{1..870}	lnc-WDR74-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR74-1:6	chr11	 62622896	 62623765	-	lnc-WDR74-1	lnc-WDR74-1:6	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62633230	inter
CUST_50862_PI429285431	7.6877723	P	6.5274315	P	2.23510219981949	0	lncRNA	54506-1_{1..212}	hg19_lincRNAsTranscripts_TCONS_l2_00005178 range=chr11:104776171-104777801 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005178 range=chr11:104776171-104777801 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	104776171	104776382	-	NA	NA	NA	NA	CASP12	NA	chr11:104766171-104769397	inter
CUST_33850_PI429285431	0.89627004	A	0.9017978	A	0.996175779767656	0	lncRNA	35395-1_{1..1440}	n340636|BC015458|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3098|NULL|-0.5832110|-0.1493181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340636|BC015458|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3098|NULL|-0.5832110|-0.1493181	chr5	134370210	134371649	+	NA	NA	NA	NA	PITX1	NA	chr5:134363424-134369964	inter
CUST_7820_PI429285431	1.1090401	A	0.9027084	A	1.15375084140736	0	lncRNA	9444-1_{1..578}	lnc-WDR54-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR54-1:4	chr2	 74619116	 74619693	+	lnc-WDR54-1	lnc-WDR54-1:4	ENSG00000237737	AC005041.9	DCTN1	NA	chr2:74609116-74619214	inner
CUST_10274_PI429285431	1.4187063	A	0.97218764	A	1.36274786495965	0	lncRNA	11799-1_{1..965}	lnc-CDK12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK12-1:1	chr17	 37723041	 37724005	+	lnc-CDK12-1	lnc-CDK12-1:1	XLOC_012192	linc-PPP1R1B	NA	NA	NA	inter
CUST_4720_PI429285431	0.89764553	A	1.0249727	A	0.915526042659046	0	lncRNA	4666-1_{1..552}	"transcript_id ""ENST00000444357.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444357.1"" | genecode_v17"	chr14	 19670906	 19671457	-	ENSG00000228294.2	ENST00000444357.1	AL589743.2	AL589743.2-001	NA	NA	NA	inter
CUST_23879_PI429285431	1.2765477	A	1.6712121	A	0.760666302384129	0	lncRNA	25438-1_{1..457}	lnc-INTS12-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-INTS12-1:2	chr4	106850637	106851093	-	lnc-INTS12-1	lnc-INTS12-1:2	ENSG00000250740.1	RP11-710F7.2	NPNT	"hg19_refFlat_NPNT:range=chr4:106816810-1068901475'pad=0,hg19_refFlat_NPNT:range=chr4:106816810-1068901475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50chr4:106840637-106860735"	NA	inner
CUST_10276_PI429285431	2.3955092	A	2.4354756	A	0.972677600562035	0	lncRNA	11801-1_{1..316}	lnc-P2RX5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-P2RX5-1:1	chr17	  3608720	  3609035	-	lnc-P2RX5-1	lnc-P2RX5-1:1	XLOC_012358	linc-P2RX5	ITGAE	NA	chr17:3617919-3618812	inter
CUST_42663_PI429285431	0.9046217	A	0.97509193	A	0.952327547146486	0	lncRNA	45568-1_{1..86}	ENST00000581746 proj_ncrna:snoRNA chromosome:GRCh37:HG1293_PATCH:206143800:206143885:1 gene:ENSG00000265183 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581746 proj_ncrna:snoRNA chromosome:GRCh37:HG1293_PATCH:206143800:206143885:1 gene:ENSG00000265183 gene_biotype:snoRNA transcript_biotype:snoRNA	chrHG1293_PATCH	206143800	206143885	+	ENSG00000265183	ENST00000581746	NA	NA	NA	NA	NA	Unknown
CUST_16625_PI429285431	1.2432517	A	0.88558567	A	1.28135126935354	0	lncRNA	18326-1_{1..242}	lnc-PRKAA2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRKAA2-5:1	chr1	 56436568	 56436809	+	lnc-PRKAA2-5	lnc-PRKAA2-5:1	XLOC_000210	linc-PRKAA2-5	NA	NA	NA	inter
CUST_508_PI429285431	7.8952165	P	8.171257	P	0.825854480842753	0	lncRNA	500-1_{1..609}	"transcript_id ""ENST00000565520.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000565520.1"" | genecode_v17"	chr1	185300389	185300997	-	ENSG00000261024.1	ENST00000565520.1	GS1-279B7.1	GS1-279B7.1-001	NA	NA	NA	inter
CUST_13042_PI429285431	2.1750553	A	1.9677137	A	1.15455876051213	0	lncRNA	14667-1_{1..866}	lnc-PENK-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PENK-2:10	chr8	 57472012	 57472877	-	lnc-PENK-2	lnc-PENK-2:10	XLOC_007087	linc-PENK-1	NA	NA	NA	inter
CUST_39605_PI429285431	13.365649	P	13.166216	P	1.14824698864581	0	lncRNA	40547-2_{3001..3407}	n387634|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011keu.1||0.4887260|-0.1880477	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387634|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011keu.1||0.4887260|-0.1880477	chr7	 72715965	 72716371	+	NA	NA	NA	NA	TRIM50	NA	chr7:72726535-72726800	inner
CUST_37444_PI429285431	0.898109	A	0.8977933	A	1.00021885050918	0	lncRNA	38543-1_{1..1829}	n345892|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1441|NULL|-1.3087900|-0.2937433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345892|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1441|NULL|-1.3087900|-0.2937433	chr1	101861067	101862895	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20"	NA	inter
CUST_12083_PI429285431	7.5124035	P	7.5867906	P	0.94974551555642	0	lncRNA	13677-1_{1..857}	lnc-RP11-327F22.5.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RP11-327F22.5.1-3:1	chr16	 51069447	 51070303	+	lnc-RP11-327F22.5.1-3	lnc-RP11-327F22.5.1-3:1	XLOC_011719	linc-CHD9-9	NA	NA	NA	inter
CUST_35183_PI429285431	0.9001692	A	0.96901196	A	0.953402451399958	0	lncRNA	36585-1_{1..2655}	n342162|AK092560|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4649|NULL|-0.0665303|-0.3157462	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342162|AK092560|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4649|NULL|-0.0665303|-0.3157462	chr6	160119780	160122434	-	NA	NA	NA	NA	SOD2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr6:160109780-160114353"	NA	inter
CUST_26393_PI429285431	2.9717097	A	3.0075321	A	0.975475538042521	0	lncRNA	27900-1_{1..277}	lnc-THRSP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THRSP-1:1	chr11	 77734580	 77734856	+	lnc-THRSP-1	lnc-THRSP-1:1	ENSG00000254675.1	RP11-7I15.4	NDUFC2-KCTD14	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90chr11:77726761-77744767"	NA	inner
CUST_34789_PI429285431	2.00249	A	1.8207468	A	1.13425356960834	0	lncRNA	36226-1_{1..1005}	n341696|BC029043|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4167|NULL|-1.2165900|-0.2572577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341696|BC029043|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4167|NULL|-1.2165900|-0.2572577	chr9	 72287664	 72288668	+	NA	NA	NA	NA	APBA1	NA	chr9:72277664-72287275	inter
LNCA_21_P0008221	3.3608356	P	3.021057	P	1.2655623623413	0	lncRNA	TCONS_00022122	NA	NA	NA	NA	XLOC_010731	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010731), lincRNA [TCONS_00022122]"	chr13:112849730-112849455	hs|13q34	Agilent_HUMAN_G3V2	TCONS_00022122	TCONS_00022122	chr13	112849455	112849730	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47487_PI429285431	4.7241397	P	4.5134926	P	1.15720711603614	0	lncRNA	51507-1_{1..3000}	"gi|402747157|ref|NR_073136.1| Homo sapiens Hermansky-Pudlak syndrome 4 (HPS4), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402747157|ref|NR_073136.1| Homo sapiens Hermansky-Pudlak syndrome 4 (HPS4), transcript variant 6, non-coding RNA"	Chr22	 26846848	 26849847	-	89781	NR_073136.1	NA	NA	NA	NA	NA	inter
CUST_19320_PI429285431	1.5101418	A	1.04284	A	1.38252138844447	0	lncRNA	20986-1_{1..588}	lnc-AC114546.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC114546.1-3:2	chr15	 35082008	 35082595	+	lnc-AC114546.1-3	lnc-AC114546.1-3:2	ENSG00000250007.2	RP11-814P5.1	ACTC1	NA	chr15:35080297-35087927	inner
CUST_16100_PI429285431	1.4536715	A	2.7966423	A	0.394208065678306	0	lncRNA	17805-1_{1..1160}	lnc-PROK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PROK2-1:1	chr3	 71834785	 71835944	-	lnc-PROK2-1	lnc-PROK2-1:1	XLOC_003157	linc-PROK2-1	PROK2	NA	chr3:71824785-71834357	inter
CUST_16796_PI429285431	6.220603	P	6.335906	P	0.923188399020011	0	lncRNA	18504-1_{1..1999}	lnc-XPC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-XPC-1:1	chr3	 14242379	 14244377	-	lnc-XPC-1	lnc-XPC-1:1	XLOC_003053	linc-XPC-4	LSM3	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10chr3:14232379-14239869"	NA	inter
CUST_7455_PI429285431	0.874664	A	0.8753358	A	0.999534452125157	0	lncRNA	9098-1_{1..713}	lnc-RASA1-7:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASA1-7:10	chr5	 88236630	 88237342	+	lnc-RASA1-7	lnc-RASA1-7:10	ENSG00000248309	CTC-454M9.1	NA	NA	NA	inter
CUST_7583_PI429285431	5.7372856	P	6.080978	P	0.788021883918358	0	lncRNA	9218-1_{1..815}	lnc-BHLHE41-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BHLHE41-2:5	chr12	 26111865	 26112679	-	lnc-BHLHE41-2	lnc-BHLHE41-2:5	ENSG00000246695	RP11-877E17.2	NA	NA	NA	inner
CUST_20452_PI429285431	2.128856	A	2.3664238	A	0.848174021032576	0	lncRNA	22096-1_{1..432}	lnc-GIP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GIP-2:1	chr17	 47090907	 47091338	-	lnc-GIP-2	lnc-GIP-2:1	ENSG00000251461.1	RP11-501C14.6	IGF2BP1	NA	chr17:47080907-47101087	inner
LNCA_21_P0004386	0.8747681	A	0.875941	A	0.999187338060644	0	lncRNA	TCONS_00010330	NA	NA	NA	NA	XLOC_004818	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004818), lincRNA [TCONS_00010330]"	chr5:51971420-51971361	hs|5q11.2	Agilent_HUMAN_G3V2	TCONS_00010330	TCONS_00010330	chr5	 51971361	 51971420	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4111_PI429285431	1.9724988	A	2.002915	A	0.979137787476943	0	lncRNA	4072-1_{1..1159}	"transcript_id ""ENST00000531784.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531784.1"" | genecode_v17"	chr11	128485760	128486918	-	ENSG00000255465.2	ENST00000531784.1	RP11-264E20.1	RP11-264E20.1-001	NA	NA	NA	inter
CUST_18342_PI429285431	0.89598596	A	1.0510985	A	0.898062315198711	0	lncRNA	20071-1_{1..687}	lnc-RP11-181C3.1.1-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-181C3.1.1-4:5	chr12	 98126359	 98127045	-	lnc-RP11-181C3.1.1-4	lnc-RP11-181C3.1.1-4:5	ENSG00000257501	RP11-1016B18.1	NA	NA	NA	inter
CUST_48735_PI429285431	0.87502676	A	0.87622285	A	0.999171277169404	0	lncRNA	52574-1_{1..2277}	hg19_lincRNAsTranscripts_TCONS_l2_00015481 range=chr2:131437623-131443433 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015481 range=chr2:131437623-131443433 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	131437623	131439899	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26433_PI429285431	7.0526776	P	7.139798	P	0.941399896809236	0	lncRNA	27940-1_{1..770}	lnc-GBP5-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GBP5-2:11	chr1	 90097575	 90098344	-	lnc-GBP5-2	lnc-GBP5-2:11	ENSG00000231999.2	RP5-1007M22.2	LRRC8C	"hg19_refFlat_LRRC8B:range=chr1:90048210-900586025'pad=0,hg19_refFlat_LRRC8B:range=chr1:90048210-900586025'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60chr1:90098644-90107750"	NA	inter
CUST_2841_PI429285431	1.8835642	A	2.1483514	A	0.832321494509714	0	lncRNA	2824-2_{3001..4162}	"transcript_id ""ENST00000566570.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000566570.1"" | genecode_v17"	chr7	 56563817	 56564978	+	ENSG00000261275.1	ENST00000566570.1	RP11-760D2.11	RP11-760D2.11-001	NA	NA	NA	inter
CUST_28822_PI429285431	1.4018282	A	1.4506328	A	0.966737023988048	0	lncRNA	30531-1_{1..215}	n326236|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000095285|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000095285|-1.3236600|-0.4990081	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326236|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000095285|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000095285|-1.3236600|-0.4990081	chr1	216271799	216272013	+	NA	NA	NA	NA	USH2A	NA	chr1:216261799-216283625	inner
CUST_20713_PI429285431	6.8190827	P	6.584987	P	1.17616926793334	0	lncRNA	22348-1_{1..572}	lnc-SLC30A4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SLC30A4-1:3	chr15	 45689120	 45689691	-	lnc-SLC30A4-1	lnc-SLC30A4-1:3	ENSG00000230288.4	RP11-519G16.1	SPATA5L1	NA	chr15:45694519-45699544	inter
LNCA_21_P0002529	2.1356344	A	1.2050894	A	1.90599587904594	0	lncRNA	TCONS_00004538	NA	NA	NA	NA	XLOC_002440	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002440), lincRNA [TCONS_00004538]"	chr2:192560644-192560585	hs|2q32.3	Agilent_HUMAN_G3V2	TCONS_00004538	TCONS_00004538	chr2	192560585	192560644	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10720_PI429285431	4.4382653	P	2.734403	A	3.25771929997035	0	lncRNA	12256-1_{1..381}	lnc-AC007405.7.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC007405.7.1-1:2	chr2	171634154	171634534	+	lnc-AC007405.7.1-1	lnc-AC007405.7.1-1:2	XLOC_001748	linc-GAD1-1	LOC285141	NA	chr2:171640296-171644343	inter
CUST_14700_PI429285431	3.428633	P	3.818198	P	0.763359737266422	0	lncRNA	16364-1_{1..441}	lnc-ZKSCAN1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZKSCAN1-1:2	chr7	 99608999	 99609439	+	lnc-ZKSCAN1-1	lnc-ZKSCAN1-1:2	XLOC_006188	linc-ZKSCAN1-1	ZKSCAN1	NA	chr7:99613219-99619247	inter
CUST_16476_PI429285431	0.98791033	A	0.9593405	A	1.02000047921386	0	lncRNA	18174-1_{1..240}	lnc-COIL-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COIL-2:5	chr17	 55162201	 55162440	-	lnc-COIL-2	lnc-COIL-2:5	XLOC_012530	linc-COIL-2	AKAP1	NA	chr17:55162553-55172366	inter
CUST_19405_PI429285431	1.9707835	A	2.3592107	A	0.763962008204726	0	lncRNA	21067-1_{1..326}	lnc-C17orf75-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf75-1:1	chr17	 30607932	 30608257	-	lnc-C17orf75-1	lnc-C17orf75-1:1	ENSG00000263674.1	RP11-443G13.2	RHBDL3	NA	chr17:30597932-30617972	inner
LNCA_21_P0009938	0.87070906	A	0.87475497	A	0.997199517578126	0	lncRNA	TCONS_00028112	NA	NA	NA	NA	XLOC_013466	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013466), lincRNA [TCONS_00028112]"	chr20:16556361-16556420	hs|20p12.1	Agilent_HUMAN_G3V2	TCONS_00028112	TCONS_00028112	chr20	 16556361	 16556420	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19393_PI429285431	5.8852696	P	6.511103	P	0.648045313580191	0	lncRNA	21055-1_{1..839}	lnc-LMOD1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LMOD1-3:1	chr1	201798079	201798917	-	lnc-LMOD1-3	lnc-LMOD1-3:1	ENSG00000231871.1	IPO9-AS1	NAV1	"hg19_refFlat_NAV1:range=chr1:201709152-2017890605'pad=0,hg19_refFlat_NAV1:range=chr1:201709152-2017890605'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NAV1:range=chr1:201617797-2017890605'pad=0,hg19_refFlat_NAV1:range=chr1:201617797-2017890605'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_IPO9:range=chr1:201798338-2018451825'pad=0,hg19_refFlat_IPO9:range=chr1:201798338-2018451825'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.10chr1:201788079-201796102"	NA	inner
CUST_37427_PI429285431	0.8984498	A	0.9202392	A	0.985010221037476	0	lncRNA	38532-1_{1..3000}	n345881|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1430|NULL|-1.3048800|-0.2856205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n345881|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1430|NULL|-1.3048800|-0.2856205	chr12	105863638	105866637	+	NA	NA	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-18.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00"	NA	inter
CUST_38316_PI429285431	5.2199655	P	4.676422	P	1.45754810601013	0	lncRNA	39365-1_{1..3000}	n382014|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uxg.2||0.0945765|-0.3389424	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382014|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uxg.2||0.0945765|-0.3389424	chr13	 40100015	 40103014	-	NA	NA	NA	NA	LHFP	"hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.71;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-62.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50chr13:40090015-40117556"	NA	inner
CUST_8301_PI429285431	9.500571	P	9.570912	P	0.952412856097849	0	lncRNA	9886-1_{1..710}	lnc-ABCB4-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ABCB4-1:4	chr7	 86974621	 86975330	-	lnc-ABCB4-1	lnc-ABCB4-1:4	ENSG00000182165	TP53TG1	CROT	NA	chr7:86974951-86984831	inter
CUST_46867_PI429285431	9.936428	P	10.200613	P	0.832668989034271	0	lncRNA	50997-1_{1..452}	"gi|283046789|ref|NR_033203.1| Homo sapiens HOXB cluster antisense RNA 3 (HOXB-AS3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|283046789|ref|NR_033203.1| Homo sapiens HOXB cluster antisense RNA 3 (HOXB-AS3), transcript variant 3, non-coding RNA"	Chr17	 46669654	 46670105	+	404266	NR_033203.1	NA	NA	NA	"hg19_refFlat_HOXA6:range=chr7:27185277-271873685'pad=0,hg19_refFlat_HOXA6:range=chr7:27185277-271873685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_HOXA7:range=chr7:27194528-271961645'pad=0,hg19_refFlat_HOXA7:range=chr7:27194528-271961645'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_HOXB6:range=chr17:46673775-466755125'pad=0,hg19_refFlat_HOXB6:range=chr17:46673775-466755125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_HOXA4:range=chr7:27168844-271703525'pad=0,hg19_refFlat_HOXA4:range=chr7:27168844-271703525'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_HOXB5:range=chr17:46669571-466710445'pad=0,hg19_refFlat_HOXB5:range=chr17:46669571-466710445'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00;hg19_refFlat_HOXC6:range=chr12:54422552-544237465'pad=0,hg19_refFlat_HOXC6:range=chr12:54422552-544237465'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_HOXC6:range=chr12:54422306-544237465'pad=0,hg19_refFlat_HOXC6:range=chr12:54422306-544237465'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_HOXB4:range=chr17:46654084-466556815'pad=0,hg19_refFlat_HOXB4:range=chr17:46654084-466556815'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40"	NA	inter
CUST_37726_PI429285431	3.8237891	P	3.401072	A	1.34044971522994	0	lncRNA	38823-1_{1..550}	n346230|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1780|NULL|-1.3169600|-0.2775156	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n346230|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1780|NULL|-1.3169600|-0.2775156	chr6	147981854	147982403	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16212_PI429285431	0.8950894	A	1.2122114	A	0.802669508936844	0	lncRNA	17918-1_{1..474}	lnc-PRELID2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRELID2-1:1	chr5	144869244	144869717	-	lnc-PRELID2-1	lnc-PRELID2-1:1	XLOC_005041	linc-YIPF5-3	NA	NA	NA	inter
CUST_17384_PI429285431	0.92439073	A	0.9831264	A	0.96010515500173	0	lncRNA	19106-1_{1..402}	lnc-AL445989.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL445989.1-4:1	chr13	 63167377	 63167778	+	lnc-AL445989.1-4	lnc-AL445989.1-4:1	XLOC_010409	linc-C13orf34-16	NA	NA	NA	inter
CUST_9861_PI429285431	2.455912	A	1.8087876	A	1.56604362273233	0	lncRNA	11382-1_{1..602}	lnc-AL450307.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL450307.1-2:1	chr10	133454436	133455037	-	lnc-AL450307.1-2	lnc-AL450307.1-2:1	XLOC_008998	linc-TCERG1L-2	NA	NA	NA	inter
CUST_9870_PI429285431	0.9028698	A	0.9218339	A	0.986941104606722	0	lncRNA	11393-1_{1..1302}	lnc-CHD9-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHD9-3:1	chr16	 52647565	 52648866	+	lnc-CHD9-3	lnc-CHD9-3:1	XLOC_011726	linc-CHD9-2	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10"	NA	inter
CUST_12625_PI429285431	3.8452253	P	3.669321	P	1.1296722761947	0	lncRNA	14240-1_{1..451}	lnc-GTF2F2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GTF2F2-2:2	chr13	 45952665	 45953115	+	lnc-GTF2F2-2	lnc-GTF2F2-2:2	XLOC_010376	linc-COG3-1	NA	NA	NA	inter
CUST_1_PI429285431	9.885068	P	10.360449	P	0.719276811772466	0	lncRNA	1-1_{1..1187}	"transcript_id ""ENST00000417324.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000417324.1"" | genecode_v17"	chr1	    34554	    35740	-	ENSG00000237613.2	ENST00000417324.1	FAM138A	FAM138A-001	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	inter
LNCA_19_P00318511	2.5551412	A	3.0127523	A	0.728191042818514	0	lncRNA	ENST00000423838	NA	BC014369	NA	Hs.516739	XLOC_002504	NA	ENST00000423838	NA	NA	"BROAD Institute lincRNA (XLOC_002504), lincRNA [TCONS_00003502]"	chr2:227044910-227044851	hs|2q36.3	Agilent_HUMAN_G3V2	ENST00000423838	ENST00000423838	chr2	227044851	227044910	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48727_PI429285431	2.0008001	A	2.5646112	A	0.676512689255141	0	lncRNA	52568-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00014895 range=chr2:131160171-131197314 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014895 range=chr2:131160171-131197314 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	131160171	131163170	-	NA	NA	NA	NA	LOC646802	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20chr2:131198341-131198697"	NA	inter
CUST_15803_PI429285431	0.9214058	A	1.3216878	A	0.757710161064499	0	lncRNA	17493-1_{1..369}	lnc-RP11-817J15.3.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-817J15.3.1-1:2	chr11	102551985	102552353	+	lnc-RP11-817J15.3.1-1	lnc-RP11-817J15.3.1-1:2	XLOC_009261	linc-DYNC2H1-4	NA	NA	NA	inter
CUST_34210_PI429285431	1.0489776	A	2.0826614	A	0.488461310348317	0	lncRNA	35723-1_{1..774}	n341069|AL117542|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3535|NULL|-0.8073720|-0.2246472	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341069|AL117542|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3535|NULL|-0.8073720|-0.2246472	chr11	 75511921	 75512694	-	NA	NA	NA	NA	DGAT2	NA	chr11:75501921-75512579	inner
CUST_41310_PI429285431	0.905833	A	0.9042012	A	1.00113171747871	0	lncRNA	42328-1_{1..80}	ENST00000582271 ncrna:miRNA chromosome:GRCh37:5:9053928:9054007:-1 gene:ENSG00000266415 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582271 ncrna:miRNA chromosome:GRCh37:5:9053928:9054007:-1 gene:ENSG00000266415 gene_biotype:miRNA transcript_biotype:miRNA	chr5	  9053928	  9054007	-	ENSG00000266415	ENST00000582271	NA	NA	SEMA5A	NA	chr5:9043928-9064007	inner
CUST_48549_PI429285431	7.5680037	P	7.6282225	P	0.959118647781819	0	lncRNA	52398-1_{1..400}	hg19_lincRNAsTranscripts_TCONS_l2_00014840 range=chr2:114425313-114426158 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014840 range=chr2:114425313-114426158 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	114425313	114425712	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29948_PI429285431	12.019058	P	12.428926	P	0.752692238453465	0	lncRNA	31712-1_{1..599}	n334144|M83106|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196511|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196511|3.0149500|-0.1719672	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334144|M83106|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196511|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196511|3.0149500|-0.1719672	chr11	117073730	117074328	+	NA	NA	NA	NA	PCSK7	NA	chr11:117075788-117085072	inner
CUST_32237_PI429285431	6.763708	P	6.622357	P	1.10293746922585	0	lncRNA	33929-1_{1..2796}	n338811|AK124213|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1234|NULL|-1.1043800|-0.3716969	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338811|AK124213|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1234|NULL|-1.1043800|-0.3716969	chr2	 44117986	 44120781	-	NA	NA	NA	NA	LRPPRC	NA	chr2:44113363-44130782	inner
LNCA_21_P0005303	0.87864596	A	0.8872646	A	0.994043822757431	0	lncRNA	ENST00000440935	NA	NA	NA	NA	XLOC_006433	NA	ENST00000440935	THC2783229	NA	"BROAD Institute lincRNA (XLOC_006433), lincRNA [TCONS_00013165]"	chr7:46517497-46517438	hs|7p12.3	Agilent_HUMAN_G3V2	ENST00000440935	ENST00000440935	chr7	 46517438	 46517497	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19087_PI429285431	3.0608277	A	0.8752009	A	4.54924394934248	0	lncRNA	20776-2_{3001..5246}	lnc-APBA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-APBA2-1:1	chr15	 29002960	 29005205	+	lnc-APBA2-1	lnc-APBA2-1:1	ENSG00000248334	AC055876.5	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90"	NA	inter
CUST_45772_PI429285431	4.633787	P	3.706353	P	1.90189025421381	0	lncRNA	50117-1_{1..2093}	"gi|219842206|ref|NR_026541.1| Homo sapiens solute carrier family 25, member 51 pseudogene (LOC494141), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|219842206|ref|NR_026541.1| Homo sapiens solute carrier family 25, member 51 pseudogene (LOC494141), transcript variant 1, non-coding RNA"	Chr11	 18230685	 18232777	+	494141	NR_026541.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001059	2.0039432	A	0.87698877	A	2.18397210589291	0	lncRNA	ENST00000423842	NA	NA	NA	NA	XLOC_000554	NA	ENST00000423842	THC2707828	NA	"BROAD Institute lincRNA (XLOC_000554), lincRNA [TCONS_00000387]"	chr1:212719072-212727777	hs|1q32.3	Agilent_HUMAN_G3V2	ENST00000423842	ENST00000423842	chr1	212719072	212727777	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005501	0.87427413	A	0.8761273	A	0.998716305081525	0	lncRNA	BC034312	NA	BC034312	NA	Hs.648913	XLOC_006483	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006483), lincRNA [TCONS_00013852]"	chr7:66438173-66438114	hs|7q11.21	Agilent_HUMAN_G3V2	BC034312	BC034312	chr7	 66438114	 66438173	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40173_PI429285431	10.804213	P	10.261395	P	1.45681532099258	0	lncRNA	41008-1_{1..1594}	n407915|NR_027483|lncRNA|Homosapiens||RefGeneNoncode|NR_027483||4.4756200|-0.1779287	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407915|NR_027483|lncRNA|Homosapiens||RefGeneNoncode|NR_027483||4.4756200|-0.1779287	chr12	  6977277	  6978870	+	NA	NA	NA	NA	USP5	NA	chr12:6967277-6975796	inner
CUST_26434_PI429285431	0.9198971	A	0.883634	A	1.02545422987283	0	lncRNA	27941-1_{1..457}	lnc-GPRC5A-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPRC5A-2:7	chr12	 13101129	 13101585	+	lnc-GPRC5A-2	lnc-GPRC5A-2:7	ENSG00000256893.1	RP11-392P7.6	GPRC5D	NA	chr12:13093709-13103318	inner
CUST_45521_PI429285431	11.738408	P	11.3805275	P	1.28154176826467	0	lncRNA	49929-2_{3001..3710}	"gi|322309226|ref|NR_037774.1| Homo sapiens signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 (STAM), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|322309226|ref|NR_037774.1| Homo sapiens signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 (STAM), transcript variant 2, non-coding RNA"	NW_003315932.1	    75916	    76625	+	8027	NR_037774.1	NA	NA	NA	NA	NA	Unknown
CUST_15718_PI429285431	0.90513116	A	0.90970445	A	0.996835055958769	0	lncRNA	17404-1_{1..245}	lnc-CD300C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD300C-1:1	chr17	 72533873	 72534117	-	lnc-CD300C-1	lnc-CD300C-1:1	XLOC_012574	linc-CD300LB	CD300C	NA	chr17:72537247-72542282	inter
CUST_2515_PI429285431	4.198846	P	4.2576194	P	0.960080046234601	0	lncRNA	2505-1_{1..3000}	"transcript_id ""ENST00000429998.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429998.2"" | genecode_v17"	chr6	 34247456	 34250455	+	ENSG00000225339.2	ENST00000429998.2	RP11-513I15.6	RP11-513I15.6-001	NUDT3	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60chr6:34254971-34264545"	NA	inter
LNCA_21_P0011321	2.1729538	A	3.690321	P	0.349322820729332	0	lncRNA	TCONS_l2_00008611	NA	NA	NA	NA	XLOC_l2_004640	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004640), lincRNA [TCONS_l2_00008611]"	chr15:42953343-42953402	hs|15q15.2	Agilent_HUMAN_G3V2	TCONS_l2_00008611	TCONS_l2_00008611	chr15	 42953343	 42953402	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16379_PI429285431	3.201149	P	4.036616	P	0.560401607800223	0	lncRNA	18077-1_{1..324}	lnc-EIF2AK4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2AK4-2:1	chr15	 40365954	 40366277	+	lnc-EIF2AK4-2	lnc-EIF2AK4-2:1	XLOC_011219	linc-BUB1B	NA	NA	NA	inter
CUST_45113_PI429285431	2.4336717	A	1.207977	A	2.33868036926	0	lncRNA	49594-1_{1..1714}	"gi|213511921|ref|NR_024476.1| Homo sapiens uncharacterized LOC100132707 (LOC100132707), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|213511921|ref|NR_024476.1| Homo sapiens uncharacterized LOC100132707 (LOC100132707), transcript variant 1, non-coding RNA"	Chr7	154720227	154721940	+	100132707	NR_024476.1	NA	NA	NA	"hg19_refFlat_PAXIP1:range=chr7:154735859-1547946395'pad=0,hg19_refFlat_PAXIP1:range=chr7:154735859-1547946395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00"	NA	inter
CUST_33773_PI429285431	7.953506	P	7.3121605	P	1.5597831810411	0	lncRNA	35326-1_{1..2480}	n340556|AK092035|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3018|NULL|-0.2490880|-0.2842193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340556|AK092035|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3018|NULL|-0.2490880|-0.2842193	chr17	 18228889	 18231368	+	NA	NA	NA	NA	SMCR8	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-57.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30chr17:18218889-18231370"	NA	inner
LNCA_21_P0007825	8.96564	P	8.790203	P	1.12930642592547	0	lncRNA	TCONS_00021084	NA	NA	NA	NA	XLOC_009677	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009677), lincRNA [TCONS_00021084]"	chr12:16573924-16573983	hs|12p12.3	Agilent_HUMAN_G3V2	TCONS_00021084	TCONS_00021084	chr12	 16573924	 16573983	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_91_PI429201921	2.7731497	A	1.4032397	A	2.58454442397454	0	lncRNA	94-1_{1..2632}	TC21000907.hg.1	TCONS_00028913-XLOC_014049 // Rinn lincRNAs // linc-CLDN17 chr21:-:31581468-31584101 // chr21 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr21:-:31581468-31584101	NA	Affy_HUMAN_HTA2.0	TCONS_00028913-XLOC_014049	linc-CLDN17	chr21	 31581468	 31584101	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20005_PI429285431	3.3854947	P	2.1148655	A	2.4126676583783	0	lncRNA	21658-1_{1..648}	lnc-ANKMY2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKMY2-1:1	chr7	 16759452	 16760099	-	lnc-ANKMY2-1	lnc-ANKMY2-1:1	ENSG00000235837.1	AC073333.8	NA	"hg19_refFlat_BZW1:range=chr2:201677941-2016869015'pad=0,hg19_refFlat_BZW1:range=chr2:201677941-2016869015'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_BZW2:range=chr7:16705069-167457135'pad=0,hg19_refFlat_BZW2:range=chr7:16705069-167457135'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.70"	NA	inter
CUST_48711_PI429285431	1.3869112	A	2.7644296	A	0.38488026420539	0	lncRNA	52553-1_{1..1033}	hg19_lincRNAsTranscripts_TCONS_l2_00013960 range=chr2:127656113-127659672 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013960 range=chr2:127656113-127659672 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	127656113	127657145	+	NA	NA	NA	NA	LOC339760	NA	chr2:127646773-127659013	inter
CUST_44659_PI429285431	9.975104	P	9.465883	P	1.42328147065824	0	lncRNA	49221-1_{1..1481}	"gi|260275535|ref|NR_028588.1| Homo sapiens enoyl-CoA delta isomerase 2 (ECI2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|260275535|ref|NR_028588.1| Homo sapiens enoyl-CoA delta isomerase 2 (ECI2), transcript variant 4, non-coding RNA"	Chr6	  4115927	  4117407	-	10455	NR_028588.1	NA	NA	NA	NA	NA	inter
CUST_25214_PI429285431	5.974054	P	6.3119383	P	0.791200750669684	0	lncRNA	26745-1_{1..533}	lnc-SLC25A47-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC25A47-3:1	chr14	100731651	100732183	+	lnc-SLC25A47-3	lnc-SLC25A47-3:1	ENSG00000258904.1	RP11-638I2.2	YY1	"hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10chr14:100721651-100741742"	NA	inner
CUST_27993_PI429285431	0.89988333	A	0.9051317	A	0.996368716247377	0	lncRNA	29601-1_{1..336}	n325246|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328703|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328703|-1.1798700|-0.1761507	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325246|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328703|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328703|-1.1798700|-0.1761507	chr2	 75555086	 75555421	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12829_PI429285431	1.1661997	A	1.4868748	A	0.800695109709874	0	lncRNA	14456-1_{1..463}	lnc-SARS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SARS-1:1	chr1	109756181	109756643	+	lnc-SARS-1	lnc-SARS-1:1	XLOC_000336	linc-SARS	KIAA1324	NA	chr1:109746181-109749403	inter
CUST_27446_PI429285431	1.214743	A	0.9034917	A	1.24078340833239	0	lncRNA	29015-1_{1..403}	n324621|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039629|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039629|-1.1513000|-0.4178567	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324621|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039629|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039629|-1.1513000|-0.4178567	chr6	   903562	   903964	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_52232_PI429285431	0.8966776	A	0.9074513	A	0.992560054658615	0	lncRNA	55744-1_{1..1029}	hg19_lincRNAsTranscripts_TCONS_00030035 range=chr7_gl000195_random:83303-86697 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00030035 range=chr7_gl000195_random:83303-86697 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7_gl000195_random	    83303	    84331	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45709_PI429285431	4.239954	P	4.783196	P	0.686227097129265	0	lncRNA	50078-1_{1..3000}	"gi|375298750|ref|NR_046331.1| Homo sapiens BR serine/threonine kinase 2 (BRSK2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375298750|ref|NR_046331.1| Homo sapiens BR serine/threonine kinase 2 (BRSK2), transcript variant 5, non-coding RNA"	Chr11	  1411129	  1414128	+	9024	NR_046331.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0011173	0.9048298	A	0.92762256	A	0.984325408079372	0	lncRNA	TCONS_l2_00007057	NA	NA	NA	NA	XLOC_l2_003888	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003888), lincRNA [TCONS_l2_00007057]"	chr13:19866104-19866045	hs|13q12.11	Agilent_HUMAN_G3V2	TCONS_l2_00007057	TCONS_l2_00007057	chr13	 19866045	 19866104	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8011_PI429285431	1.808123	A	0.9008578	A	1.87548691817121	0	lncRNA	9623-1_{1..2266}	lnc-NLK-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NLK-2:1	chr17	 26206133	 26208398	+	lnc-NLK-2	lnc-NLK-2:1	ENSG00000251558	ENSG00000266527.1	C17orf108	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_LYRM9:range=chr17:26206499-262097205'pad=0,hg19_refFlat_LYRM9:range=chr17:26206499-262097205'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-22.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80chr17:26205340-26218263"	NA	inner
CUST_1435_PI429285431	4.5164075	P	2.9574292	A	2.94645105286365	0	lncRNA	1424-1_{1..1493}	"transcript_id ""ENST00000497996.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000497996.1"" | genecode_v17"	chr3	109128837	109130329	+	ENSG00000228980.3	ENST00000497996.1	RP11-702L6.4	RP11-702L6.4-002	FLJ25363	"hg19_refFlat_H3F3A:range=chr1:226252053-2262591805'pad=0,hg19_refFlat_H3F3A:range=chr1:226252053-2262591805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr3:109128837-109214014"	NA	inner
CUST_16641_PI429285431	1.0914412	A	0.9006349	A	1.14140144930225	0	lncRNA	18342-1_{1..496}	lnc-SLITRK6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK6-1:1	chr13	 86215835	 86216330	-	lnc-SLITRK6-1	lnc-SLITRK6-1:1	XLOC_010681	linc-SLITRK1-1	NA	NA	NA	inter
CUST_12866_PI429285431	4.301365	P	4.857368	P	0.680184011798617	0	lncRNA	14493-1_{1..422}	lnc-AC016722.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC016722.2.1-1:1	chr2	 47101982	 47102403	+	lnc-AC016722.2.1-1	lnc-AC016722.2.1-1:1	XLOC_001460	linc-TTC7A-1	NA	NA	NA	inter
CUST_95_PI429285431	4.6098113	P	3.6324048	A	1.96892273811139	0	lncRNA	87-1_{1..614}	"transcript_id ""ENST00000439881.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000439881.1"" | genecode_v17"	chr20	 26046283	 26046896	+	ENSG00000125804.9	ENST00000439881.1	FAM182A	FAM182A-004	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.80"	NA	inter
CUST_48058_PI429285431	1.1529567	A	1.422203	A	0.82975291629497	0	lncRNA	51935-1_{1..381}	"gi|397138128|ref|XR_159383.1| PREDICTED: Homo sapiens uncharacterized LOC100996902 (LOC100996902), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397138128|ref|XR_159383.1| PREDICTED: Homo sapiens uncharacterized LOC100996902 (LOC100996902), misc_RNA"	NA	NA	NA	NA	NA	XR_159383.1	NA	NA	NA	NA	NA	Unknown
CUST_39877_PI429285431	0.89528704	A	0.9129168	A	0.987854342780675	0	lncRNA	40769-2_{3001..6000}	n406542|NR_024052_5|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_5||1.5958200|-0.1895631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406542|NR_024052_5|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_5||1.5958200|-0.1895631	chr6	  1606264	  1609263	-	NA	NA	NA	NA	GMDS	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_FOXC1:range=chr6:1610681-16123425'pad=0,hg19_refFlat_FOXC1:range=chr6:1610681-16123425'pad=0 3'pad=0 strand=+ repeatMasking=none,-112.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FOXC2:range=chr16:86600942-866024475'pad=0,hg19_refFlat_FOXC2:range=chr16:86600942-866024475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50chr6:1624041-1652995"	NA	inner
CUST_27683_PI429285431	0.8995125	A	0.91195977	A	0.991409322465036	0	lncRNA	29261-1_{1..424}	n324890|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158280|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158280|-0.9432070|-0.4526397	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324890|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158280|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158280|-0.9432070|-0.4526397	chr21	 19247452	 19247875	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15178_PI429285431	1.4478818	A	1.9720415	A	0.695364007855149	0	lncRNA	16842-1_{1..388}	lnc-UMOD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UMOD-1:1	chr16	 20367516	 20367903	-	lnc-UMOD-1	lnc-UMOD-1:1	XLOC_011891	linc-UMOD	UMOD	NA	chr16:20357516-20364037	inter
CUST_41194_PI429285431	1.0578719	A	2.0395327	A	0.506396451346551	0	lncRNA	42059-1_{1..87}	ENST00000384818 ncrna:miRNA chromosome:GRCh37:19:54219848:54219934:1 gene:ENSG00000207549 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384818 ncrna:miRNA chromosome:GRCh37:19:54219848:54219934:1 gene:ENSG00000207549 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54219848	 54219934	+	ENSG00000207549	ENST00000384818	NA	NA	NA	NA	NA	inter
CUST_14131_PI429285431	0.88944703	A	0.8882174	A	1.00085267789091	0	lncRNA	15781-1_{1..456}	lnc-VGLL3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VGLL3-2:1	chr3	 86316406	 86316861	-	lnc-VGLL3-2	lnc-VGLL3-2:1	XLOC_003176	linc-GBE1-2	NA	NA	NA	inter
CUST_3827_PI429285431	5.134486	P	5.7698164	P	0.64379335900124	0	lncRNA	3794-1_{1..764}	"transcript_id ""ENST00000527483.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000527483.1"" | genecode_v17"	chr10	127389005	127389768	-	ENSG00000224023.6	ENST00000527483.1	RP11-383C5.4	RP11-383C5.4-003	C10orf137	NA	chr10:127408084-127418029	inter
CUST_23149_PI429285431	0.8833907	A	0.8827658	A	1.00043324149513	0	lncRNA	24720-1_{1..704}	lnc-FOS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOS-1:1	chr14	 75738341	 75739044	+	lnc-FOS-1	lnc-FOS-1:1	ENSG00000258820.1	RP11-293M10.2	FOS	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20chr14:75745481-75748564"	NA	inter
CUST_23014_PI429285431	1.3157164	A	2.1172285	A	0.573747512975684	0	lncRNA	24586-1_{1..822}	lnc-TJP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TJP2-1:1	chr9	 71736400	 71737221	+	lnc-TJP2-1	lnc-TJP2-1:1	ENSG00000227410.1	RP11-265B8.4	TJP2	NA	chr9:71736224-71747148	inner
CUST_21498_PI429285431	0.8830056	A	0.8880555	A	0.996505795045191	0	lncRNA	23116-1_{1..410}	lnc-OR5P3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR5P3-1:3	chr11	  7904407	  7904816	-	lnc-OR5P3-1	lnc-OR5P3-1:3	ENSG00000254951.2	RP11-494M8.4	NA	NA	NA	inter
CUST_17964_PI429285431	4.334939	P	4.3875713	P	0.964175516051695	0	lncRNA	19697-1_{1..400}	lnc-SSTR1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SSTR1-3:1	chr14	 38397063	 38397462	+	lnc-SSTR1-3	lnc-SSTR1-3:1	XLOC_010808	linc-SSTR1-1	NA	NA	NA	inter
CUST_15194_PI429285431	0.8944683	A	0.90809757	A	0.990597393491547	0	lncRNA	16862-1_{1..756}	lnc-RNF219-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF219-1:2	chr13	 79370110	 79370865	-	lnc-RNF219-1	lnc-RNF219-1:2	XLOC_010664	linc-RNF219-1	NA	NA	NA	inter
CUST_7124_PI429285431	2.0316803	A	3.2713604	P	0.423466544304341	0	lncRNA	7061-1_{1..435}	"transcript_id ""ENST00000602419.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602419.1"" | genecode_v17"	chrX	150666198	150666632	+	ENSG00000270052.1	ENST00000602419.1	WI2-80269A6.1	WI2-80269A6.1-001	NA	NA	NA	inter
CUST_6471_PI429285431	1.7615583	A	2.0124843	A	0.84035685546072	0	lncRNA	6412-1_{1..515}	"transcript_id ""ENST00000603718.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603718.1"" | genecode_v17"	chr19	 35340182	 35340696	-	ENSG00000271109.1	ENST00000603718.1	CTC-523E23.11	CTC-523E23.11-001	NA	NA	NA	inter
CUST_38099_PI429285431	1.1839516	A	0.8958912	A	1.22099762999539	0	lncRNA	39175-1_{1..1766}	n381123|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001crj.1||-0.1228150|-0.2803205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381123|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001crj.1||-0.1228150|-0.2803205	chr1	 47859449	 47861214	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80"	NA	inter
LNCA_33_P3293645	3.0249915	P	3.3950753	P	0.773737552352449	0	lncRNA	XR_133104	XR_133104	XR_133104	100288805	NA	HYDIN2	hydrocephalus inducing homolog 2 (mouse)	NA	NA	NA	"PREDICTED: Homo sapiens hydrocephalus inducing homolog 2 (mouse) (HYDIN2), miscRNA [XR_133104]"	chr16:70989072-70989013	hs|16q22.2	Agilent_HUMAN_G3V2	XR_133104	XR_133104	chr16	 70989013	 70989072	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22044_PI429285431	9.519714	P	9.479719	P	1.02811026349124	0	lncRNA	23652-1_{1..547}	lnc-PCBP4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PCBP4-1:1	chr3	 52007981	 52008527	-	lnc-PCBP4-1	lnc-PCBP4-1:1	ENSG00000254782.1	RP11-155D18.12	ACY1	NA	chr3:52017300-52018047	inner
CUST_41300_PI429285431	1.0930564	A	1.3426614	A	0.84112667844137	0	lncRNA	42298-1_{1..84}	ENST00000385136 ncrna:miRNA chromosome:GRCh37:X:146280562:146280645:-1 gene:ENSG00000207871 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385136 ncrna:miRNA chromosome:GRCh37:X:146280562:146280645:-1 gene:ENSG00000207871 gene_biotype:miRNA transcript_biotype:miRNA	chrX	146280562	146280645	-	ENSG00000207871	ENST00000385136	NA	NA	NA	NA	NA	inter
CUST_2129_PI429285431	0.89690644	A	0.8972161	A	0.999785383077575	0	lncRNA	2120-1_{1..510}	"transcript_id ""ENST00000507693.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507693.1"" | genecode_v17"	chr5	 32949099	 32949608	+	ENSG00000248279.1	ENST00000507693.1	CTD-2218G20.2	CTD-2218G20.2-002	NA	NA	NA	inter
CUST_46511_PI429285431	1.659634	A	0.88821536	A	1.70694744489944	0	lncRNA	50703-1_{1..3000}	"gi|313760651|ref|NR_037623.1| Homo sapiens F-box protein 22 (FBXO22), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|313760651|ref|NR_037623.1| Homo sapiens F-box protein 22 (FBXO22), transcript variant 3, non-coding RNA"	Chr15	 76196200	 76199199	+	26263	NR_037623.1	NA	NA	NA	NA	NA	inter
CUST_27184_PI429285431	2.1454825	A	1.873896	A	1.20713455738749	0	lncRNA	28724-1_{1..466}	n324313|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043022|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043022|-1.3151200|-0.3819604	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324313|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043022|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043022|-1.3151200|-0.3819604	chr6	164687511	164687976	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5271_PI429285431	0.877565	A	0.879478	A	0.998674888180625	0	lncRNA	5211-1_{1..569}	"transcript_id ""ENST00000560054.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560054.1"" | genecode_v17"	chr15	 81952823	 81953391	-	ENSG00000259692.1	ENST00000560054.1	RP11-499F3.2	RP11-499F3.2-002	NA	NA	NA	inter
LNCA_21_P0009441	0.8745253	A	0.87583464	A	0.999092846383458	0	lncRNA	TCONS_00026236	NA	NA	NA	NA	XLOC_012610	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012610), lincRNA [TCONS_00026236]"	chr18:2637147-2637206	hs|18p11.32	Agilent_HUMAN_G3V2	TCONS_00026236	TCONS_00026236	chr18	  2637147	  2637206	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44287_PI429285431	7.2011976	P	7.282604	P	0.945135839194351	0	lncRNA	48920-2_{3001..6000}	"gi|228480225|ref|NR_027622.1| Homo sapiens four and a half LIM domains 1 pseudogene (LOC100128164), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|228480225|ref|NR_027622.1| Homo sapiens four and a half LIM domains 1 pseudogene (LOC100128164), transcript variant 1, non-coding RNA"	Chr3	169664772	169667771	-	100128164	NR_027622.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10"	NA	inter
CUST_32070_PI429285431	6.379371	P	4.437853	P	3.84109594301223	0	lncRNA	33778-2_{3001..4300}	n338629|BX647147|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1041|NULL|-0.1171300|-0.3858170	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n338629|BX647147|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1041|NULL|-0.1171300|-0.3858170	chr13	 30779774	 30781073	-	NA	NA	NA	NA	KATNAL1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr13:30776767-30791018"	NA	inner
LNCA_24_P323754	2.9857235	P	4.0492563	P	0.478458997338685	0	lncRNA	XR_109960	XR_109960	XR_109960	100131510	Hs.66163	LOC100131510	uncharacterized LOC100131510	NA	THC2650403	NA	"PREDICTED: Homo sapiens hypothetical LOC100131510 (LOC100131510), miscRNA [XR_109960]"	chr2:025593065-025593004	hs|2p23.3	Agilent_HUMAN_G3V2	XR_109960	XR_109960	chr2	 25593004	 25593065	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20141_PI429285431	0.89281887	A	0.9054852	A	0.991258797487403	0	lncRNA	21786-1_{1..585}	lnc-SPTBN5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPTBN5-1:1	chr15	 42119935	 42120519	-	lnc-SPTBN5-1	lnc-SPTBN5-1:1	ENSG00000250379.1	RP11-23P13.4	MAPKBP1	"hg19_refFlat_MAPKBP1:range=chr15:42067474-421176345'pad=0,hg19_refFlat_MAPKBP1:range=chr15:42067474-421176345'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.40chr15:42109935-42120053"	NA	inter
CUST_48710_PI429285431	0.8761662	A	0.8760753	A	1.0000630090637	0	lncRNA	52552-1_{1..1114}	hg19_lincRNAsTranscripts_TCONS_l2_00013962 range=chr2:127656113-127659673 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013962 range=chr2:127656113-127659673 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	127656113	127657226	+	NA	NA	NA	NA	LOC339760	NA	chr2:127646773-127659013	inter
LNCA_21_P0011957	0.8770949	A	0.8791885	A	0.998549879505073	0	lncRNA	TCONS_l2_00014845	NA	NA	NA	NA	XLOC_l2_008221	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008221), lincRNA [TCONS_l2_00014845]"	chr2:114632833-114632774	hs|2q14.1	Agilent_HUMAN_G3V2	TCONS_l2_00014845	TCONS_l2_00014845	chr2	114632774	114632833	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42291_PI429285431	5.08063	P	4.88078	P	1.14857892865173	0	lncRNA	44906-1_{1..141}	ENST00000516427 ncrna:snoRNA chromosome:GRCh37:1:156161854:156161994:-1 gene:ENSG00000252236 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516427 ncrna:snoRNA chromosome:GRCh37:1:156161854:156161994:-1 gene:ENSG00000252236 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	156161854	156161994	-	ENSG00000252236	ENST00000516427	NA	NA	SLC25A44	NA	chr1:156163730-156171994	inter
CUST_15940_PI429285431	0.8936	A	0.8997097	A	0.995774033305081	0	lncRNA	17637-1_{1..258}	lnc-OPRK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OPRK1-1:1	chr8	 54215896	 54216153	-	lnc-OPRK1-1	lnc-OPRK1-1:1	XLOC_007082	linc-OPRK1-3	NA	NA	NA	inter
CUST_23185_PI429285431	0.8841567	A	0.883671	A	1.00033671826247	0	lncRNA	24757-1_{1..476}	lnc-CTD-2117L12.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2117L12.1.1-1:2	chr5	 58080551	 58081026	-	lnc-CTD-2117L12.1.1-1	lnc-CTD-2117L12.1.1-1:2	ENSG00000248475.1	RP11-479O16.1	RAB3C	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70chr5:58070551-58090606"	NA	inner
CUST_30189_PI429285431	0.89888895	A	1.1167573	A	0.859834945032062	0	lncRNA	31963-1_{1..215}	n334891|AJ459835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248092_11|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248092_11|-1.2031400|-0.4663778	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334891|AJ459835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248092_11|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248092_11|-1.2031400|-0.4663778	chr6	   766665	   766879	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011857	3.437317	P	3.5430095	P	0.929358739226977	0	lncRNA	XR_109900	XR_109900	XR_109900	NA	NA	LOC100131316	uncharacterized LOC100131316	NA	THC2628041	NA	"PREDICTED: Homo sapiens hypothetical LOC100131316 (LOC100131316), miscRNA [XR_109900]"	chr2:136762735-136762794	hs|2q21.3	Agilent_HUMAN_G3V2	XR_109900	XR_109900	chr2	136762735	136762794	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003593	1.9492321	A	0.8777909	A	2.10153167289659	0	lncRNA	TCONS_00008034	NA	NA	NA	NA	XLOC_003498	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003498), lincRNA [TCONS_00008034]"	chr4:32230039-32230098	hs|4p15.1	Agilent_HUMAN_G3V2	TCONS_00008034	TCONS_00008034	chr4	 32230039	 32230098	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44056_PI429285431	5.1193323	P	4.8617754	P	1.19545257683345	0	lncRNA	48731-1_{1..909}	"gi|310119118|ref|XR_108428.1| PREDICTED: Homo sapiens uncharacterized LOC100507554 (LOC100507554), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310119118|ref|XR_108428.1| PREDICTED: Homo sapiens uncharacterized LOC100507554 (LOC100507554), misc_RNA"	Chr2	217351335	217352243	-	100507554	XR_108428.2	NA	NA	NA	NA	NA	inter
CUST_50519_PI429285431	0.909996	A	1.123424	A	0.862485435623734	0	lncRNA	54215-1_{1..241}	hg19_lincRNAsTranscripts_TCONS_l2_00030864 range=chrX:134812381-134814989 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030864 range=chrX:134812381-134814989 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	134812381	134812621	-	NA	NA	NA	NA	LOC644717	NA	chrX:134802381-134822210	inter
CUST_29665_PI429285431	6.8774934	P	7.2394834	P	0.778090569849574	0	lncRNA	31427-1_{1..203}	n333294|AY099493|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084412|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084412|0.2897410|-0.3008765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333294|AY099493|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084412|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084412|0.2897410|-0.3008765	chr1	 33099645	 33099847	-	NA	NA	NA	NA	ZBTB8OS	NA	chr1:33089645-33116185	inner
CUST_38161_PI429285431	0.88875014	A	0.8852736	A	1.00241265968964	0	lncRNA	39232-1_{1..2047}	n381393|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ijk.1||-0.2063380|-0.2608775	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381393|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ijk.1||-0.2063380|-0.2608775	chr10	  6567125	  6569171	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00"	NA	inner
CUST_43615_PI429285431	10.254203	P	10.42507	P	0.888308683979521	0	lncRNA	48377-2_{3001..3857}	"gi|356995910|ref|NR_045515.1| Homo sapiens zinc finger and BTB domain containing 7B (ZBTB7B), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|356995910|ref|NR_045515.1| Homo sapiens zinc finger and BTB domain containing 7B (ZBTB7B), transcript variant 4, non-coding RNA"	Chr1	154978106	154978962	+	51043	NR_045515.1	NA	NA	NA	NA	NA	inter
CUST_26555_PI429285431	1.7425213	A	1.8149984	A	0.951003726896976	0	lncRNA	28060-1_{1..570}	lnc-NPIPL2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPIPL2-2:2	chr16	 74468341	 74468910	+	lnc-NPIPL2-2	lnc-NPIPL2-2:2	ENSG00000261170.1	RP11-252A24.5	NA	NA	NA	inter
CUST_3777_PI429285431	1.9300163	A	1.727791	A	1.15047154393048	0	lncRNA	3745-1_{1..294}	"transcript_id ""ENST00000421225.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421225.1"" | genecode_v17"	chr10	104221152	104221445	+	ENSG00000243628.2	ENST00000421225.1	RP11-18I14.7	RP11-18I14.7-007	TMEM180	NA	chr10:104221170-104236802	inner
CUST_17340_PI429285431	5.5773478	P	4.687936	P	1.85242072088129	0	lncRNA	19058-1_{1..2515}	lnc-ANKRD10-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD10-4:1	chr13	111971923	111974437	-	lnc-ANKRD10-4	lnc-ANKRD10-4:1	XLOC_010725	linc-ANKRD10-4	C13orf16	NA	chr13:111973015-111982339	inter
LNCA_21_P0008434	0.903917	A	0.9290575	A	0.982724889080338	0	lncRNA	TCONS_00022739	NA	NA	NA	NA	XLOC_011015	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011015), lincRNA [TCONS_00022739]"	chr14:49992472-49992413	hs|14q21.3	Agilent_HUMAN_G3V2	TCONS_00022739	TCONS_00022739	chr14	 49992413	 49992472	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45289_PI429285431	6.1550426	P	6.0940814	P	1.0431605382777	0	lncRNA	49737-1_{1..3000}	"gi|190610030|ref|NR_023392.1| Homo sapiens zinc finger protein 252, pseudogene (ZNF252P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|190610030|ref|NR_023392.1| Homo sapiens zinc finger protein 252, pseudogene (ZNF252P), non-coding RNA"	Chr8	146198975	146201974	-	286101	NR_023392.1	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_17364_PI429285431	3.2318807	P	3.6351655	P	0.756134716625858	0	lncRNA	19084-1_{1..599}	lnc-REG3G-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-REG3G-4:1	chr2	 78144874	 78145472	+	lnc-REG3G-4	lnc-REG3G-4:1	XLOC_001542	linc-REG3G-3	NA	NA	NA	inter
CUST_41614_PI429285431	6.859102	P	6.608324	P	1.18984858989558	0	lncRNA	42985-1_{1..75}	ENST00000384976 ncrna:miRNA chromosome:GRCh37:1:110141515:110141589:1 gene:ENSG00000207709 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384976 ncrna:miRNA chromosome:GRCh37:1:110141515:110141589:1 gene:ENSG00000207709 gene_biotype:miRNA transcript_biotype:miRNA	chr1	110141515	110141589	+	ENSG00000207709	ENST00000384976	NA	NA	GNAI3	NA	chr1:110131515-110138452	inter
CUST_8851_PI429285431	0.8901622	A	0.90615845	A	0.988973487018281	0	lncRNA	10390-1_{1..2690}	lnc-FAM129B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM129B-1:1	chr9	130257534	130260223	-	lnc-FAM129B-1	lnc-FAM129B-1:1	ENSG00000249202	ENST00000503383	FAM129B	"hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_LRSAM1:range=chr9:130216807-1302651785'pad=0,hg19_refFlat_LRSAM1:range=chr9:130216807-1302651785'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.60;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40chr9:130267618-130268083"	NA	inner
LNCA_21_P0009377	13.801952	P	13.764579	P	1.02624344002014	0	lncRNA	TCONS_00025825	NA	NA	NA	NA	XLOC_012097	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012097), lincRNA [TCONS_00025825]"	chr17:7308628-7308687	hs|17p13.1	Agilent_HUMAN_G3V2	TCONS_00025825	TCONS_00025825	chr17	  7308628	  7308687	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10996_PI429285431	0.8953503	A	0.91821635	A	0.984275404873753	0	lncRNA	12540-1_{1..515}	lnc-JAG1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JAG1-5:3	chr20	 11858906	 11859420	-	lnc-JAG1-5	lnc-JAG1-5:3	XLOC_013652	linc-JAG1-2	NA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80"	NA	inter
CUST_24125_PI429285431	1.8209512	A	1.0045803	A	1.76097069387929	0	lncRNA	25675-1_{1..596}	lnc-NTHL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-NTHL1-1:1	chr16	  2146817	  2147412	-	lnc-NTHL1-1	lnc-NTHL1-1:1	ENSG00000261123.1	RP11-304L19.3	TSC2	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30chr16:2136817-2138713"	NA	inner
CUST_12691_PI429285431	0.88766265	A	0.9002602	A	0.991306056543118	0	lncRNA	14309-1_{1..1900}	lnc-C9orf80-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf80-1:1	chr9	115511360	115513259	-	lnc-C9orf80-1	lnc-C9orf80-1:1	XLOC_007830	linc-C9orf80	SNX30	NA	chr9:115513134-115522795	inter
CUST_21129_PI429285431	0.9247808	A	2.2332935	A	0.403736884682303	0	lncRNA	22755-1_{1..551}	lnc-BMP8A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BMP8A-1:1	chr1	 40038753	 40039303	+	lnc-BMP8A-1	lnc-BMP8A-1:1	ENSG00000228060.1	RP11-15J6.1	PABPC4	"hg19_refFlat_PABPC4:range=chr1:40027370-400416235'pad=0,hg19_refFlat_PABPC4:range=chr1:40027370-400416235'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70chr1:40028753-40042521"	NA	inner
CUST_42796_PI429285431	0.9163308	A	1.4333868	A	0.698796360750362	0	lncRNA	45788-1_{1..128}	ENST00000516652 ncrna:snoRNA chromosome:GRCh37:16:28892801:28892928:-1 gene:ENSG00000252461 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516652 ncrna:snoRNA chromosome:GRCh37:16:28892801:28892928:-1 gene:ENSG00000252461 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 28892801	 28892928	-	ENSG00000252461	ENST00000516652	NA	NA	SH2B1	NA	chr16:28882801-28885534	inner
CUST_12125_PI429285431	0.9044773	A	0.90252894	A	1.00135141257682	0	lncRNA	13722-2_{3001..3274}	lnc-BTG2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTG2-2:4	chr1	203370603	203370876	+	lnc-BTG2-2	lnc-BTG2-2:4	XLOC_000529	linc-PRELP	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-17.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90"	NA	inter
CUST_2583_PI429285431	1.0677961	A	0.9894398	A	1.05581443818138	0	lncRNA	2571-1_{1..407}	"transcript_id ""ENST00000457513.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457513.1"" | genecode_v17"	chr6	 97731179	 97731585	+	ENSG00000226684.2	ENST00000457513.1	RP3-418C23.2	RP3-418C23.2-001	MMS22L	NA	chr6:97721179-97731052	inter
CUST_15609_PI429285431	3.1724453	P	3.7168205	P	0.685688294957524	0	lncRNA	17296-1_{1..265}	lnc-SEPSECS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEPSECS-1:1	chr4	 25436072	 25436336	-	lnc-SEPSECS-1	lnc-SEPSECS-1:1	XLOC_003909	linc-SEPSECS-1	NA	NA	NA	inter
CUST_41672_PI429285431	0.9103154	A	0.8972762	A	1.00907905153193	0	lncRNA	43106-1_{1..78}	ENST00000365690 ncrna:miRNA chromosome:GRCh37:14:101513658:101513735:1 gene:ENSG00000202560 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365690 ncrna:miRNA chromosome:GRCh37:14:101513658:101513735:1 gene:ENSG00000202560 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101513658	101513735	+	ENSG00000202560	ENST00000365690	NA	NA	NA	NA	NA	inter
CUST_45905_PI429285431	3.579786	P	3.8424752	P	0.833532755899816	0	lncRNA	50216-1_{1..2099}	"gi|377520159|ref|NR_046363.1| Homo sapiens 5-hydroxytryptamine (serotonin) receptor 3A, ionotropic (HTR3A), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|377520159|ref|NR_046363.1| Homo sapiens 5-hydroxytryptamine (serotonin) receptor 3A, ionotropic (HTR3A), transcript variant 4, non-coding RNA"	Chr11	113845797	113847895	+	3359	NR_046363.1	NA	NA	NA	NA	NA	inter
CUST_41640_PI429285431	0.88007987	A	0.8891548	A	0.993729480139236	0	lncRNA	43037-1_{1..69}	ENST00000577768 ncrna:miRNA chromosome:GRCh37:6:157950164:157950232:1 gene:ENSG00000266617 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577768 ncrna:miRNA chromosome:GRCh37:6:157950164:157950232:1 gene:ENSG00000266617 gene_biotype:miRNA transcript_biotype:miRNA	chr6	157950164	157950232	+	ENSG00000266617	ENST00000577768	NA	NA	ZDHHC14	NA	chr6:157940164-157960232	inner
CUST_31938_PI429285431	3.2091787	A	3.0908859	A	1.08544964532701	0	lncRNA	33666-1_{1..1802}	n338495|CR608123|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|892|NULL|4.2976100|-0.3072878	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338495|CR608123|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|892|NULL|4.2976100|-0.3072878	chr19	 31855202	 31857003	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30"	NA	inter
CUST_38903_PI429285431	0.889548	A	0.8876191	A	1.00133790579506	0	lncRNA	39891-1_{1..3000}	n384950|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003paw.3||0.5399810|-0.3087655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n384950|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003paw.3||0.5399810|-0.3087655	chr6	 52529198	 52532197	+	NA	NA	NA	NA	TMEM14A	NA	chr6:52535884-52543951	inter
CUST_41355_PI429285431	6.276597	P	6.444513	P	0.890127558853977	0	lncRNA	42427-1_{1..67}	ENST00000584587 ncrna:miRNA chromosome:GRCh37:14:53619767:53619833:-1 gene:ENSG00000266552 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584587 ncrna:miRNA chromosome:GRCh37:14:53619767:53619833:-1 gene:ENSG00000266552 gene_biotype:miRNA transcript_biotype:miRNA	chr14	 53619767	 53619833	-	ENSG00000266552	ENST00000584587	NA	NA	DDHD1	NA	chr14:53609767-53620046	inner
CUST_1944_PI429285431	0.88981587	A	0.9051919	A	0.989398741826158	0	lncRNA	1937-1_{1..406}	"transcript_id ""ENST00000515805.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515805.1"" | genecode_v17"	chr4	152808695	152809100	-	ENSG00000249708.1	ENST00000515805.1	RP11-503L23.1	RP11-503L23.1-001	NA	NA	NA	inter
CUST_14127_PI429285431	0.89364266	A	1.1061535	A	0.863033915111626	0	lncRNA	15777-1_{1..343}	lnc-TRIM36-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIM36-1:1	chr5	114528446	114528788	-	lnc-TRIM36-1	lnc-TRIM36-1:1	XLOC_004958	linc-TRIM36	NA	NA	NA	inter
CUST_365_PI429201921	3.1932373	P	3.5205507	P	0.797019319372627	0	lncRNA	233-3_{6001..8804}	TC04002667.hg.1	TCONS_l2_00021942-XLOC_l2_011214 // Broad TUCP // linc-TBCK chr4:-:107279554-107288359 // chr4 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr4:-:107279554-107288359	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00021942-XLOC_l2_011214	linc-TBCK	chr4	107279554	107288359	-	NA	NA	NA	NA	DAB1	NA	chr1:57842248-57863122	Unknown
CUST_143_PI429201921	6.302394	P	6.2748656	P	1.0192644430054	0	lncRNA	127-1_{1..3000}	TC19002574.hg.1	 TCONS_l2_00013221-XLOC_l2_007118 // Broad TUCP // linc-BIRC8-1 chr19:-:54103204-54105467 // chr19 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00013222-XLOC_l2_007118 // Broad TUCP // linc-BIRC8-1 chr19:-:54103302-54106654 // chr19 // 100 // 100 // 0 // --- // 0///TCONS_l2_00013402-XLOC_l2_007118 // Broad TUCP // linc-BIRC8-1 chr19:-:54102886-54106751 // chr19 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr19:-:54102886-54106751	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00013402-XLOC_l2_007118	linc-BIRC8-1	chr19	 54102886	 54106751	-	NA	NA	NA	NA	PRDM16	NA	chr1:2985742-2990350	Unknown
CUST_16825_PI429285431	0.90536064	A	1.5922127	A	0.621207838883312	0	lncRNA	18531-2_{3001..4819}	lnc-OSTC-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OSTC-2:1	chr4	109601952	109603770	+	lnc-OSTC-2	lnc-OSTC-2:1	XLOC_003641	linc-SEC24B-2	OSTC	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80chr4:109588952-109588978"	NA	inter
CUST_29996_PI429285431	5.9578843	P	6.3339157	P	0.770554337198316	0	lncRNA	31762-1_{1..260}	n334377|S78080|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216774|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216774|1.8381700|-0.0127374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334377|S78080|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216774|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216774|1.8381700|-0.0127374	chr19	  5212349	  5212608	-	NA	NA	NA	NA	PTPRS	NA	chr19:5205519-5224479	inner
CUST_41530_PI429285431	1.0673623	A	1.2726836	A	0.867345500694968	0	lncRNA	42783-1_{1..84}	ENST00000585192 ncrna:miRNA chromosome:GRCh37:12:104985411:104985494:1 gene:ENSG00000264295 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585192 ncrna:miRNA chromosome:GRCh37:12:104985411:104985494:1 gene:ENSG00000264295 gene_biotype:miRNA transcript_biotype:miRNA	chr12	104985411	104985494	+	ENSG00000264295	ENST00000585192	NA	NA	CHST11	NA	chr12:104975411-104995494	inner
CUST_31330_PI429285431	3.2248404	A	2.0335402	A	2.28358453944671	0	lncRNA	33113-1_{1..2033}	n337797|BC033844|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|179|NULL|-1.1347800|-0.1786405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337797|BC033844|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|179|NULL|-1.1347800|-0.1786405	chr1	 27018622	 27020654	-	NA	NA	NA	NA	ARID1A	NA	chr1:27022522-27030622	inter
CUST_2355_PI429285431	7.612005	P	7.653551	P	0.971613203250113	0	lncRNA	2347-1_{1..760}	"transcript_id ""ENST00000502275.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502275.1"" | genecode_v17"	chr5	124705858	124706617	-	ENSG00000249677.1	ENST00000502275.1	RP11-395P13.3	RP11-395P13.3-001	NA	NA	NA	inter
CUST_35673_PI429285431	1.7356012	A	1.2363095	A	1.41351941594175	0	lncRNA	37093-1_{1..2028}	n342832|D90187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5335|NULL|3.3943300|-0.2852912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342832|D90187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5335|NULL|3.3943300|-0.2852912	chr8	 15966967	 15968994	-	NA	NA	NA	NA	MSR1	NA	chr8:15965387-16050300	inner
CUST_45018_PI429285431	2.13186	A	2.946727	A	0.568460889801865	0	lncRNA	49520-1_{1..2874}	"gi|253970401|ref|NR_028040.1| Homo sapiens GATS, stromal antigen 3 opposite strand (GATS), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|253970401|ref|NR_028040.1| Homo sapiens GATS, stromal antigen 3 opposite strand (GATS), transcript variant 4, non-coding RNA"	Chr7	 99798276	 99801149	-	352954	NR_028040.1	NA	NA	NA	"hg19_refFlat_STAG3:range=chr7:99778180-998116385'pad=0,hg19_refFlat_STAG3:range=chr7:99778180-998116385'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.60"	NA	inter
CUST_45745_PI429285431	7.221243	P	7.7191324	P	0.708142004664141	0	lncRNA	50094-1_{1..1792}	"gi|372266105|ref|NR_045927.1| Homo sapiens post-GPI attachment to proteins 2 (PGAP2), transcript variant 15, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372266105|ref|NR_045927.1| Homo sapiens post-GPI attachment to proteins 2 (PGAP2), transcript variant 15, non-coding RNA"	Chr11	  3819049	  3820840	+	27315	NR_045927.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0011050	0.87664354	A	1.0739748	A	0.872162423876273	0	lncRNA	TCONS_l2_00005763	NA	NA	NA	NA	XLOC_l2_003052	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003052), lincRNA [TCONS_l2_00005763]"	chr12:76709282-76709341	hs|12q21.2	Agilent_HUMAN_G3V2	TCONS_l2_00005763	TCONS_l2_00005763	chr12	 76709282	 76709341	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004971	8.683899	P	8.886561	P	0.868945741168965	0	lncRNA	TCONS_00012018	NA	NA	NA	NA	XLOC_005542	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005542), lincRNA [TCONS_00012018]"	chr6:168152704-168152763	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012018	TCONS_00012018	chr6	168152704	168152763	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16091_PI429285431	3.3178475	P	3.4770849	P	0.895498300908276	0	lncRNA	17795-1_{1..1743}	lnc-SLC35G4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SLC35G4-1:3	chr18	 11490379	 11492121	+	lnc-SLC35G4-1	lnc-SLC35G4-1:3	XLOC_012626	linc-GNAL-1	NA	NA	NA	inter
CUST_8039_PI429285431	0.8897303	A	0.88510454	A	1.00321147828423	0	lncRNA	9647-1_{1..1001}	lnc-CHAD-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CHAD-4:2	chr17	 48636666	 48637666	-	lnc-CHAD-4	lnc-CHAD-4:2	ENSG00000250107	RP11-94C24.10	SPATA20	NA	chr17:48626666-48633213	inter
CUST_46664_PI429285431	6.941477	P	6.869184	P	1.05138641570643	0	lncRNA	50834-1_{1..3000}	"gi|308736977|ref|NR_036684.1| Homo sapiens carboxylesterase 2 (CES2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|308736977|ref|NR_036684.1| Homo sapiens carboxylesterase 2 (CES2), transcript variant 3, non-coding RNA"	Chr16	 66968374	 66971373	+	8824	NR_036684.1	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-59.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90"	NA	inter
CUST_7020_PI429285431	4.991402	P	5.286547	P	0.814990416581296	0	lncRNA	6967-1_{1..611}	"transcript_id ""ENST00000454113.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454113.1"" | genecode_v17"	chrX	 10210379	 10210989	+	ENSG00000227042.1	ENST00000454113.1	RP6-1O2.1	RP6-1O2.1-001	CLCN4	NA	chrX:10200379-10205700	inter
CUST_3624_PI429285431	3.5937562	P	2.597549	A	1.99474896817048	0	lncRNA	3594-1_{1..693}	"transcript_id ""ENST00000446372.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000446372.2"" | genecode_v17"	chr10	 10826402	 10827094	-	ENSG00000225383.2	ENST00000446372.2	SFTA1P	SFTA1P-001	NA	NA	NA	inter
CUST_31114_PI429285431	1.3679374	A	1.3161337	A	1.03656005209663	0	lncRNA	32908-1_{1..386}	n337404|DQ668386|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393196|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393196|-1.0805000|-0.3550922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337404|DQ668386|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393196|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393196|-1.0805000|-0.3550922	chr8	102633032	102633417	+	NA	NA	NA	NA	GRHL2	NA	chr8:102623032-102643418	inner
LNCA_21_P0006073	6.906646	P	7.060657	P	0.898748273971752	0	lncRNA	ENST00000452923	NA	NA	NA	NA	XLOC_007684	NA	ENST00000452923	NA	NA	"BROAD Institute lincRNA (XLOC_007684), lincRNA [TCONS_00015807]"	chr9:37383267-37383208	hs|9p13.2	Agilent_HUMAN_G3V2	ENST00000452923	ENST00000452923	chr9	 37383208	 37383267	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46575_PI429285431	3.7022564	P	3.8747115	P	0.887331383293593	0	lncRNA	50759-1_{1..2948}	"gi|224586902|ref|NR_027242.1| Homo sapiens SSTR5 antisense RNA 1 (SSTR5-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224586902|ref|NR_027242.1| Homo sapiens SSTR5 antisense RNA 1 (SSTR5-AS1), non-coding RNA"	Chr16	  1114081	  1117028	-	146336	NR_027242.1	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20"	NA	inter
LNCA_19_P00321478	1.5956539	A	1.1011974	A	1.40878992808058	0	lncRNA	ENST00000415499	NA	NA	NA	NA	XLOC_l2_013734	NA	ENST00000415499	THC2538746	NA	"BROAD Institute lincRNA (XLOC_l2_013734), lincRNA [TCONS_l2_00027287]"	chr7:19970780-19970721	hs|7p21.1	Agilent_HUMAN_G3V2	ENST00000415499	ENST00000415499	chr7	 19970721	 19970780	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21559_PI429285431	3.1488872	P	3.7231998	P	0.671606174939542	0	lncRNA	23175-1_{1..922}	lnc-C3orf37-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C3orf37-1:5	chr3	129043024	129043945	+	lnc-C3orf37-1	lnc-C3orf37-1:5	ENSG00000206417.4	H1FX-AS1	H1FX	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NUP210:range=chr3:13359181-134617265'pad=0,hg19_refFlat_NUP210:range=chr3:13359181-134617265'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60chr3:129033614-129035120"	NA	inter
LNCA_21_P0007010	2.014826	A	0.9207243	A	2.1348011594597	0	lncRNA	ENST00000449882	NA	NA	NA	NA	XLOC_008897	NA	ENST00000449882	NA	NA	"BROAD Institute lincRNA (XLOC_008897), lincRNA [TCONS_00018570]"	chr10:91427902-91427843	hs|10q23.31	Agilent_HUMAN_G3V2	ENST00000449882	ENST00000449882	chr10	 91427843	 91427902	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25465_PI429285431	1.094531	A	1.0733085	A	1.01481904523114	0	lncRNA	26995-1_{1..647}	lnc-CDK5-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK5-2:5	chr7	150721508	150722154	-	lnc-CDK5-2	lnc-CDK5-2:5	ENSG00000181652.11	ATG9B	ABCB8	NA	chr7:150725510-150731581	inter
CUST_14954_PI429285431	0.8906215	A	0.9015776	A	0.992434573177993	0	lncRNA	16618-1_{1..953}	lnc-RASA1-3:23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,UCSC,"	>lnc-RASA1-3:23	chr5	 87732090	 87733042	+	lnc-RASA1-3	lnc-RASA1-3:23	XLOC_004459	linc-POLR3G-8	NA	NA	NA	inter
CUST_20986_PI429285431	2.9575005	A	0.92968214	A	4.07787728165224	0	lncRNA	22615-1_{1..573}	lnc-RABEP2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RABEP2-2:2	chr16	 28968923	 28969495	-	lnc-RABEP2-2	lnc-RABEP2-2:2	ENSG00000260853.1	RP11-264B17.2	NFATC2IP	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10chr16:28962318-28977786"	NA	inner
CUST_52210_PI429285431	3.7239985	P	3.8024697	P	0.94706069968382	0	lncRNA	55727-1_{1..1320}	hg19_lincRNAsTranscripts_TCONS_l2_00017835 range=chr22:51110333-51112874 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017835 range=chr22:51110333-51112874 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 51110333	 51111652	+	NA	NA	NA	NA	SHANK3	NA	chr22:51113070-51122874	inter
LNCA_21_P0009311	0.9050137	A	0.92983985	A	0.982939039138347	0	lncRNA	TCONS_00025609	NA	NA	NA	NA	XLOC_012441	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012441), lincRNA [TCONS_00025609]"	chr17:32523161-32523102	hs|17q12	Agilent_HUMAN_G3V2	TCONS_00025609	TCONS_00025609	chr17	 32523102	 32523161	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37215_PI429285431	0.91002375	A	1.3117161	A	0.756969800609491	0	lncRNA	38327-1_{1..1293}	n345650|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1199|NULL|-1.3139200|-0.3950923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345650|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1199|NULL|-1.3139200|-0.3950923	chr4	122551404	122552696	-	NA	NA	NA	NA	ANXA5	NA	chr4:122589152-122598711	inter
CUST_48153_PI429285431	8.006041	P	7.2216654	P	1.72234672453236	0	lncRNA	52018-2_{3001..4224}	"gi|410169917|ref|XR_172430.1| PREDICTED: Homo sapiens hect domain and RLD 2 pseudogene 7 (HERC2P7), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410169917|ref|XR_172430.1| PREDICTED: Homo sapiens hect domain and RLD 2 pseudogene 7 (HERC2P7), misc_RNA"	NA	NA	NA	NA	NA	XR_172430.1	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	Unknown
CUST_34473_PI429285431	2.9189365	A	2.242842	A	1.59780848977512	0	lncRNA	35941-1_{1..2335}	n341348|BC017071|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3817|NULL|-1.0128400|-0.2306825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341348|BC017071|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3817|NULL|-1.0128400|-0.2306825	chr7	142569835	142572169	+	NA	NA	NA	NA	EPHB6	"hg19_refFlat_TRPV5:range=chr7:142605680-1426305565'pad=0,hg19_refFlat_TRPV5:range=chr7:142605680-1426305565'pad=0 3'pad=0 strand=- repeatMasking=none,-99.40;hg19_refFlat_TRPV6:range=chr7:142569460-1425832615'pad=0,hg19_refFlat_TRPV6:range=chr7:142569460-1425832615'pad=0 3'pad=0 strand=- repeatMasking=none,-99.40chr7:142559835-142568847"	NA	inner
CUST_594_PI429285431	2.9364777	A	2.4501684	A	1.40085661893856	0	lncRNA	586-1_{1..619}	"transcript_id ""ENST00000422837.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422837.1"" | genecode_v17"	chr1	227698297	227698915	-	ENSG00000227711.1	ENST00000422837.1	RP11-275O4.3	RP11-275O4.3-001	NA	NA	NA	inter
CUST_34873_PI429285431	5.410453	P	6.0413513	P	0.645774196151183	0	lncRNA	36299-1_{1..2542}	n341787|AK027170|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4264|NULL|-1.1109700|-0.4059793	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341787|AK027170|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4264|NULL|-1.1109700|-0.4059793	chr9	128664232	128666773	+	NA	NA	NA	NA	PBX3	NA	chr9:128654232-128676749	inner
CUST_25530_PI429285431	1.0075299	A	1.3932105	A	0.765417822932167	0	lncRNA	27060-1_{1..520}	lnc-C3orf32-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C3orf32-6:1	chr3	  6935607	  6936126	-	lnc-C3orf32-6	lnc-C3orf32-6:1	ENSG00000237665.1	GRM7-AS2	GRM7	NA	chr3:6925607-6945709	inner
LNCA_21_P0002011	0.89871734	A	2.4460025	A	0.342153317299719	0	lncRNA	ENST00000444688	NA	NA	NA	NA	XLOC_001974	NA	ENST00000444688	NA	NA	"BROAD Institute lincRNA (XLOC_001974), lincRNA [TCONS_00003196]"	chr2:8523668-8523609	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000444688	ENST00000444688	chr2	  8523609	  8523668	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5704_PI429285431	5.1543207	P	4.952665	P	1.150017408284	0	lncRNA	5628-1_{1..931}	"transcript_id ""ENST00000577164.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577164.1"" | genecode_v17"	chr17	  1616742	  1617672	-	ENSG00000186594.6	ENST00000577164.1	MIR22HG	MIR22HG-005	WDR81	NA	chr17:1619817-1630468	inner
LNCA_33_P3359858	0.8879551	A	1.746043	A	0.551683256239716	0	lncRNA	ENST00000376593	XR_109903	XR_109903	NA	Hs.652337	NA	NA	ENST00000376593	THC2487269	NA	"PREDICTED: Homo sapiens hypothetical FLJ44006 (FLJ44006), miscRNA [XR_109903]"	chr2:111857895-111857836	hs|2q13	Agilent_HUMAN_G3V2	ENST00000376593	ENST00000376593	chr2	111857836	111857895	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005265	1.8683617	A	1.9740402	A	0.929367757824193	0	lncRNA	ENST00000437569	NA	NA	NA	NA	XLOC_006271	NA	ENST00000437569	THC2763722	NA	"BROAD Institute lincRNA (XLOC_006271), lincRNA [TCONS_00013086]"	chr7:136090059-136121853	hs|7q33	Agilent_HUMAN_G3V2	ENST00000437569	ENST00000437569	chr7	136090059	136121853	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00320992	0.88424224	A	0.8970326	A	0.991173581596013	0	lncRNA	XR_132521	XR_132521	XR_132521	NA	NA	LOC100508120	NA	NA	THC2522321	NA	"PREDICTED: Homo sapiens hypothetical LOC100508120, transcript variant 1 (LOC100508120), miscRNA [XR_132521]"	chr6:2412767-2412826	hs|6p25.2	Agilent_HUMAN_G3V2	XR_132521	XR_132521	chr6	  2412767	  2412826	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34384_PI429285431	1.728347	A	0.9232136	A	1.74730735059517	0	lncRNA	35869-1_{1..651}	n341254|BC029561|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3722|NULL|-1.1376900|-0.1789077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341254|BC029561|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3722|NULL|-1.1376900|-0.1789077	chr7	 63361200	 63361850	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30141_PI429285431	0.8912295	A	0.9057976	A	0.989952974545163	0	lncRNA	31915-1_{1..334}	n334789|AJ230634|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245069|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245069|1.7591600|-0.1745651	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334789|AJ230634|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245069|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245069|1.7591600|-0.1745651	chr14	107034726	107035059	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18231_PI429285431	5.4281926	P	5.312109	P	1.08378876744595	0	lncRNA	19966-1_{1..796}	lnc-CENPP-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CENPP-3:9	chr9	 94920616	 94921411	+	lnc-CENPP-3	lnc-CENPP-3:9	ENSG00000225511	C9orf44	NA	NA	NA	inter
CUST_12490_PI429285431	8.699999	P	8.6857605	P	1.00991823903952	0	lncRNA	14101-1_{1..506}	lnc-MLLT4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MLLT4-1:1	chr6	168152269	168152774	+	lnc-MLLT4-1	lnc-MLLT4-1:1	XLOC_005542	linc-MLLT4-1	NA	NA	NA	inter
LNCA_21_P0004873	0.87777746	A	0.8855928	A	0.994597465578808	0	lncRNA	ENST00000530000	XR_132518	XR_132518	NA	Hs.157039	XLOC_005263	NA	ENST00000530000	THC2617273	NA	"PREDICTED: Homo sapiens hypothetical LOC100653005 (LOC100653005), miscRNA [XR_132518]"	chr6:33885902-33885961	hs|6p21.31	Agilent_HUMAN_G3V2	ENST00000530000	ENST00000530000	chr6	 33885902	 33885961	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18313_PI429285431	1.644566	A	1.409658	A	1.17683168880972	0	lncRNA	20040-1_{1..1734}	lnc-DCLRE1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-DCLRE1B-1:1	chr1	114442494	114444227	+	lnc-DCLRE1B-1	lnc-DCLRE1B-1:1	ENSG00000226167	RP5-1073O3.5	AP4B1	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.51;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_AP4B1:range=chr1:114437687-1144473395'pad=0,hg19_refFlat_AP4B1:range=chr1:114437687-1144473395'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_AP4B1:range=chr1:114437687-1144453005'pad=0,hg19_refFlat_AP4B1:range=chr1:114437687-1144453005'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60chr1:114437677-114447741"	NA	inter
CUST_25229_PI429285431	1.1409941	A	1.8488283	A	0.612238552939756	0	lncRNA	26760-1_{1..380}	lnc-SLC7A7-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC7A7-1:4	chr14	 23235633	 23236012	-	lnc-SLC7A7-1	lnc-SLC7A7-1:4	ENSG00000258458.1	CTD-2555K7.2	SLC7A7	NA	chr14:23242431-23245739	inner
CUST_44456_PI429285431	0.8962329	A	1.299116	A	0.756345281989396	0	lncRNA	49060-1_{1..2054}	"gi|359279890|ref|NR_045584.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 13, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|359279890|ref|NR_045584.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 13, non-coding RNA"	Chr4	159442866	159444919	+	59350	NR_045584.1	NA	NA	NA	NA	NA	inter
CUST_39386_PI429285431	3.7208023	P	4.1003466	P	0.768680353189565	0	lncRNA	40349-1_{1..797}	n386538|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010nki.1||2.2680500|-0.3732588	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386538|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010nki.1||2.2680500|-0.3732588	chrX	 56763220	 56764016	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35776_PI429285431	2.3230872	A	1.6879154	A	1.55312268901125	0	lncRNA	37191-1_{1..1997}	n344461|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_9|NULL|-1.3037900|-0.2959804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344461|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_9|NULL|-1.3037900|-0.2959804	chr2	 39681437	 39683433	+	NA	NA	NA	NA	NA	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_15105_PI429285431	3.4915895	P	3.5787156	P	0.941396177403083	0	lncRNA	16770-1_{1..1706}	lnc-CD47-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD47-2:4	chr3	107596749	107598454	-	lnc-CD47-2	lnc-CD47-2:4	XLOC_003208	linc-CBLB-9	NA	NA	NA	inter
LNCA_21_P0005030	0.874221	A	0.8769858	A	0.998085421822716	0	lncRNA	TCONS_00012191	NA	NA	NA	NA	XLOC_005748	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005748), lincRNA [TCONS_00012191]"	chr6:53611297-53611238	hs|6p12.1	Agilent_HUMAN_G3V2	TCONS_00012191	TCONS_00012191	chr6	 53611238	 53611297	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31301_PI429285431	0.9007114	A	0.9098648	A	0.993675431411352	0	lncRNA	33086-1_{1..523}	n337765|AF086491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|147|NULL|-0.2726370|-0.3332119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337765|AF086491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|147|NULL|-0.2726370|-0.3332119	chr15	 52393788	 52394310	-	NA	NA	NA	NA	GNB5	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-62.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00chr15:52413123-52413225"	NA	inner
CUST_48_PI429285431	3.9074836	P	4.2830462	P	0.770804767511532	0	lncRNA	47-1_{1..838}	"transcript_id ""ENST00000531193.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,"	">transcript_id ""ENST00000531193.1"" | genecode_v17"	chr11	125821687	125822524	+	ENSG00000254967.2	ENST00000531193.1	RP11-680F20.6	RP11-680F20.6-002	CDON	NA	chr11:125826713-125836214	inter
CUST_12435_PI429285431	5.3329773	P	5.4960766	P	0.89310437829594	0	lncRNA	14048-1_{1..797}	lnc-CST8-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CST8-3:1	chr20	 23785871	 23786667	+	lnc-CST8-3	lnc-CST8-3:1	XLOC_013494	linc-TMEM90B-4	CST2	NA	chr20:23775871-23796300	inter
LNCA_21_P0014310	1.3699303	A	0.875739	A	1.40853098440825	0	lncRNA	XR_109239	XR_109239	XR_109239	NA	Hs.722025	GS52	uncharacterized LOC100287301	NA	THC2611319	NA	"PREDICTED: Homo sapiens hypothetical LOC100287301 (GS52), miscRNA [XR_109239]"	chr16:759369-759428	hs|16p13.3	Agilent_HUMAN_G3V2	XR_109239	XR_109239	chr16	   759369	   759428	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9668_PI429285431	2.8771138	P	3.2633355	P	0.765130797668537	0	lncRNA	11185-1_{1..393}	lnc-C15orf41-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf41-2:1	chr15	 36777119	 36777511	+	lnc-C15orf41-2	lnc-C15orf41-2:1	XLOC_011211	linc-C15orf41-2	NA	NA	NA	inter
CUST_5330_PI429285431	1.3683603	A	1.0371865	A	1.25803651708358	0	lncRNA	5269-1_{1..561}	"transcript_id ""ENST00000555255.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555255.1"" | genecode_v17"	chr15	 94443930	 94444490	+	ENSG00000258785.1	ENST00000555255.1	CTD-2643K12.2	CTD-2643K12.2-001	NA	NA	NA	inter
CUST_29809_PI429285431	5.0977564	P	4.7531333	P	1.26981920252632	0	lncRNA	31572-1_{1..641}	n333524|BC039403|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000095670|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000095670|-0.3433000|-0.4098521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333524|BC039403|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000095670|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000095670|-0.3433000|-0.4098521	chr19	 21473947	 21474587	-	NA	NA	NA	NA	ZNF708	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70chr19:21463947-21484588"	NA	inner
CUST_23596_PI429285431	2.032745	A	1.3069638	A	1.6537959021822	0	lncRNA	25162-1_{1..570}	lnc-FSIP1-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FSIP1-5:5	chr15	 39566041	 39566610	-	lnc-FSIP1-5	lnc-FSIP1-5:5	ENSG00000259345.1	RP11-624L4.1	NA	NA	NA	inter
LNCA_21_P0014291	0.8768883	A	0.87814146	A	0.999131752824108	0	lncRNA	XR_109186	XR_109186	XR_109186	NA	NA	LOC100505769	uncharacterized LOC100505769	NA	THC2542877	NA	"PREDICTED: Homo sapiens hypothetical LOC100505769 (LOC100505769), miscRNA [XR_109186]"	chr15:42818919-42818978	hs|15q15.2	Agilent_HUMAN_G3V2	XR_109186	XR_109186	chr15	 42818919	 42818978	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21558_PI429285431	3.6330001	P	1.6522422	A	3.94700377758128	0	lncRNA	23174-1_{1..412}	lnc-KTN1-AS1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KTN1-AS1-1:5	chr14	 56263321	 56263732	-	lnc-KTN1-AS1-1	lnc-KTN1-AS1-1:5	ENSG00000258791.2	LINC00520	NA	NA	NA	inter
LNCA_19_P00320570	5.343203	P	6.096789	P	0.593127430873521	0	lncRNA	TCONS_00010154	NA	NA	NA	NA	XLOC_004620	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004620), lincRNA [TCONS_00010154]"	chr5:158848420-158848479	hs|5q33.3	Agilent_HUMAN_G3V2	TCONS_00010154	TCONS_00010154	chr5	158848420	158848479	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8871_PI429285431	0.9077487	A	0.9109494	A	0.997783902996002	0	lncRNA	10409-1_{1..3000}	lnc-MYC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYC-1:1	chr8	128942667	128945666	+	lnc-MYC-1	lnc-MYC-1:1	ENSG00000250002	XLOC_006923	NA	NA	NA	inter
CUST_25368_PI429285431	0.8910653	A	0.8841158	A	1.00482864685393	0	lncRNA	26898-1_{1..555}	lnc-ACOT12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACOT12-2:1	chr5	 80410631	 80411185	-	lnc-ACOT12-2	lnc-ACOT12-2:1	ENSG00000249772.1	CTD-2193P3.2	RASGRF2	"hg19_refFlat_RASGRF2:range=chr5:80256558-805215895'pad=0,hg19_refFlat_RASGRF2:range=chr5:80256558-805215895'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.50chr5:80400631-80420671"	NA	inner
CUST_47380_PI429285431	0.88492334	A	0.97003454	A	0.942711870803859	0	lncRNA	51428-1_{1..1502}	"gi|223468579|ref|NR_026812.1| Homo sapiens RUNX1 intronic transcript 1 (non-protein coding) (RUNX1-IT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223468579|ref|NR_026812.1| Homo sapiens RUNX1 intronic transcript 1 (non-protein coding) (RUNX1-IT1), non-coding RNA"	Chr21	 36410222	 36411723	-	80215	NR_026812.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0009747	3.661827	P	4.4698286	P	0.57117248997336	0	lncRNA	AK129979	NA	AK129979	NA	Hs.689399	XLOC_013274	NA	NA	THC2522855	NA	"BROAD Institute lincRNA (XLOC_013274), lincRNA [TCONS_00027239]"	chr19:23950296-23950356	hs|19p12	Agilent_HUMAN_G3V2	AK129979	AK129979	chr19	 23950296	 23950356	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35304_PI429285431	0.88125384	A	0.9067309	A	0.98249566023906	0	lncRNA	36707-1_{1..472}	n342326|X89677|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4818|NULL|2.7972000|-0.2176356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342326|X89677|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4818|NULL|2.7972000|-0.2176356	chr19	 14938207	 14938678	-	NA	NA	NA	NA	OR7A5	NA	chr19:14937139-14939276	inner
CUST_16578_PI429285431	0.9018804	A	0.90238214	A	0.999652280801964	0	lncRNA	18279-1_{1..1050}	lnc-MYO10-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYO10-3:3	chr5	 17378843	 17379892	-	lnc-MYO10-3	lnc-MYO10-3:3	XLOC_004746	linc-MYO10-4	NA	NA	NA	inter
CUST_46992_PI429285431	0.8849717	A	1.5110719	A	0.647925480560359	0	lncRNA	51091-1_{1..1865}	"gi|380503878|ref|NR_046174.2| Homo sapiens uncharacterized LOC284260 (LOC284260), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|380503878|ref|NR_046174.2| Homo sapiens uncharacterized LOC284260 (LOC284260), transcript variant 1, non-coding RNA"	Chr18	 39766633	 39768497	+	284260	NR_046174.2	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90"	NA	inter
CUST_34419_PI429285431	1.0620955	A	0.9858675	A	1.05425802248842	0	lncRNA	35899-1_{1..789}	n341292|AF520795|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3761|NULL|-1.0669000|-0.4267602	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341292|AF520795|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3761|NULL|-1.0669000|-0.4267602	chr7	104695861	104696649	-	NA	NA	NA	NA	MLL5	NA	chr7:104685861-104706650	inner
CUST_9852_PI429285431	1.227527	A	1.1281111	A	1.07133962437179	0	lncRNA	11372-1_{1..279}	lnc-AJAP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AJAP1-3:1	chr1	  5075806	  5076084	+	lnc-AJAP1-3	lnc-AJAP1-3:1	XLOC_000036	linc-KCNAB2-2	NA	NA	NA	inter
CUST_23347_PI429285431	1.8755053	A	2.059586	A	0.880209775911656	0	lncRNA	24916-1_{1..836}	lnc-NDE1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDE1-1:1	chr16	 15826342	 15827177	+	lnc-NDE1-1	lnc-NDE1-1:1	ENSG00000263335.1	AF001548.5	MYH11	"hg19_refFlat_MYH11:range=chr16:15802668-159321095'pad=0,hg19_refFlat_MYH11:range=chr16:15802668-159321095'pad=0 3'pad=0 strand=- repeatMasking=none,-103.30;hg19_refFlat_MYH11:range=chr16:15797848-159321095'pad=0,hg19_refFlat_MYH11:range=chr16:15797848-159321095'pad=0 3'pad=0 strand=- repeatMasking=none,-103.30chr16:15816342-15836850"	NA	inner
CUST_31743_PI429285431	8.208887	P	8.292974	P	0.943381359694719	0	lncRNA	33484-1_{1..1856}	n338280|BC044250|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|673|NULL|-0.1526100|-0.1238602	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338280|BC044250|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|673|NULL|-0.1526100|-0.1238602	chr19	  4653454	  4655309	+	NA	NA	NA	NA	TNFAIP8L1	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50chr19:4643454-4655580"	NA	inner
CUST_13275_PI429285431	0.9115416	A	1.4749206	A	0.676715341170827	0	lncRNA	14906-1_{1..329}	lnc-AC005838.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC005838.1-1:1	chr17	 15472205	 15472533	-	lnc-AC005838.1-1	lnc-AC005838.1-1:1	XLOC_012399	linc-FAM18B2	FAM18B2	NA	chr17:15462205-15466945	inter
LNCA_21_P0014477	7.776888	P	7.2572513	P	1.43359419433595	0	lncRNA	XR_110007	XR_110007	XR_110007	NA	NA	LOC100506758	uncharacterized LOC100506758	NA	THC2655508	NA	"PREDICTED: Homo sapiens hypothetical LOC100506758 (LOC100506758), miscRNA [XR_110007]"	chr3:50051162-50051103	hs|3p21.31	Agilent_HUMAN_G3V2	XR_110007	XR_110007	chr3	 50051103	 50051162	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41944_PI429285431	7.558093	P	7.040065	P	1.43199653329352	0	lncRNA	43702-1_{1..64}	ENST00000582515 ncrna:miRNA chromosome:GRCh37:11:62140128:62140191:1 gene:ENSG00000265696 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582515 ncrna:miRNA chromosome:GRCh37:11:62140128:62140191:1 gene:ENSG00000265696 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 62140128	 62140191	+	ENSG00000265696	ENST00000582515	NA	NA	ASRGL1	NA	chr11:62130128-62150191	inner
CUST_37948_PI429285431	6.8984313	P	6.739072	P	1.11679106168792	0	lncRNA	39038-1_{1..832}	n346495|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2045|NULL|-1.0887300|-0.1549735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346495|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2045|NULL|-1.0887300|-0.1549735	chr5	138777971	138778802	-	NA	NA	NA	NA	DNAJC18	NA	chr5:138767971-138775214	inter
CUST_44698_PI429285431	2.0648465	A	1.8687773	A	1.14557284496262	0	lncRNA	49255-1_{1..1914}	"gi|224028267|ref|NR_026972.1| Homo sapiens HLA-F antisense RNA 1 (HLA-F-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224028267|ref|NR_026972.1| Homo sapiens HLA-F antisense RNA 1 (HLA-F-AS1), transcript variant 1, non-coding RNA"	Chr6	 29694378	 29696291	-	285830	NR_026972.1	NA	NA	NA	"hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20"	NA	inter
LNCA_21_P0006919	0.9014789	A	0.92229265	A	0.985676578253643	0	lncRNA	TCONS_00018346	NA	NA	NA	NA	XLOC_008630	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008630), lincRNA [TCONS_00018346]"	chr10:118036338-118040351	hs|10q25.3	Agilent_HUMAN_G3V2	TCONS_00018346	TCONS_00018346	chr10	118036338	118040351	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48982_PI429285431	6.576601	P	7.019969	P	0.735415760500147	0	lncRNA	52820-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00019097 range=chr3:195663403-195673039 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019097 range=chr3:195663403-195673039 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	195663403	195666402	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9952_PI429285431	0.8930946	A	0.9073149	A	0.990191657801248	0	lncRNA	11476-1_{1..1490}	lnc-SIRPA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIRPA-1:1	chr20	  1815506	  1816995	+	lnc-SIRPA-1	lnc-SIRPA-1:1	XLOC_013434	linc-SIRPA-1	NA	NA	NA	inter
CUST_51901_PI429285431	5.305526	P	5.4194713	P	0.924057607566156	0	lncRNA	55445-2_{3001..3418}	hg19_lincRNAsTranscripts_TCONS_l2_00013243 range=chr19:56124972-56128560 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013243 range=chr19:56124972-56128560 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 56127972	 56128389	-	NA	NA	NA	NA	ZNF784	"hg19_refFlat_ZNF213:range=chr16:3187282-31913485'pad=0,hg19_refFlat_ZNF213:range=chr16:3187282-31913485'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.30;hg19_refFlat_ZNF205:range=chr16:3163432-31703265'pad=0,hg19_refFlat_ZNF205:range=chr16:3163432-31703265'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_ZNF865:range=chr19:56124985-561281645'pad=0,hg19_refFlat_ZNF865:range=chr19:56124985-561281645'pad=0 3'pad=0 strand=+ repeatMasking=none,-115.50chr19:56132107-56135941"	NA	inner
CUST_49910_PI429285431	0.9009001	A	0.91991687	A	0.986905073957393	0	lncRNA	53659-1_{1..1676}	hg19_lincRNAsTranscripts_TCONS_l2_00026766 range=chr7:97552148-97601647 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026766 range=chr7:97552148-97601647 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 97552148	 97553823	-	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.21;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20"	NA	inter
CUST_23603_PI429285431	0.8798994	A	0.8816204	A	0.998807804932136	0	lncRNA	25169-1_{1..2565}	lnc-FAM160A1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM160A1-2:1	chr4	152598691	152601255	+	lnc-FAM160A1-2	lnc-FAM160A1-2:1	ENSG00000251455.1	RP11-164P12.3	PET112	NA	chr4:152591808-152609045	inner
CUST_1346_PI429285431	0.8822888	A	1.2622726	A	0.768446219466113	0	lncRNA	1335-1_{1..411}	"transcript_id ""ENST00000432423.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432423.1"" | genecode_v17"	chr3	 43820453	 43820863	-	ENSG00000235886.1	ENST00000432423.1	RP4-672N11.1	RP4-672N11.1-001	NA	NA	NA	inter
CUST_34001_PI429285431	0.88670874	A	1.2951114	A	0.753457133552043	0	lncRNA	35538-1_{1..2076}	n340815|BC039327|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3278|NULL|-1.2027300|-0.3878453	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n340815|BC039327|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3278|NULL|-1.2027300|-0.3878453	chr17	 69093914	 69095989	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34509_PI429285431	1.1042054	A	0.87828034	A	1.16952691204223	0	lncRNA	35973-1_{1..2396}	n341385|AK126813|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3854|NULL|-0.9027320|-0.2690829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341385|AK126813|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3854|NULL|-0.9027320|-0.2690829	chr8	   436116	   438511	-	NA	NA	NA	NA	C8orf42	NA	chr8:441646-448512	inter
CUST_242_PI429201921	1.06286	A	0.88933504	A	1.12781071910179	0	lncRNA	185-1_{1..3000}	TC20001207.hg.1	TCONS_l2_00016765-XLOC_l2_008619 // Broad TUCP // linc-CTNNBL1-1 chr20:+:36305311-36311636 // chr20 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00016245-XLOC_l2_008619 // Broad TUCP // linc-CTNNBL1-1 chr20:+:36306777-36311547 // chr20 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr20:+:36305311-36311636	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00016765-XLOC_l2_008619	linc-CTNNBL1-1	chr20	 36305311	 36311636	+	NA	NA	NA	NA	SRSF4	NA	chr1:29474250-29483506	Unknown
CUST_30856_PI429285431	0.8845627	A	0.8944705	A	0.993155964189172	0	lncRNA	32644-1_{1..270}	n336853|AY566846|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331938_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331938_05|-1.3325800|-0.3692511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336853|AY566846|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331938_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331938_05|-1.3325800|-0.3692511	chr6	   928346	   928615	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004581	3.2919781	P	0.8775694	A	5.33100930411594	0	lncRNA	TCONS_00011087	NA	NA	NA	NA	XLOC_005081	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005081), lincRNA [TCONS_00011087]"	chr5:171163104-171163045	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00011087	TCONS_00011087	chr5	171163045	171163104	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009309	0.9153825	A	0.8768499	A	1.02706863886362	0	lncRNA	TCONS_00025602	NA	NA	NA	NA	XLOC_012430	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012430), lincRNA [TCONS_00025602]"	chr17:27339444-27339385	hs|17q11.2	Agilent_HUMAN_G3V2	TCONS_00025602	TCONS_00025602	chr17	 27339385	 27339444	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16323_PI429285431	3.1238563	P	3.5669537	P	0.735553712155505	0	lncRNA	18025-5_{12001..15000}	lnc-NAP1L2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NAP1L2-1:7	chrX	 73073217	 73076216	-	lnc-NAP1L2-1	lnc-NAP1L2-1:7	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70"	NA	inter
CUST_9194_PI429285431	2.7542682	A	2.3066657	A	1.36377202845177	0	lncRNA	10707-1_{1..3000}	lnc-MRPL40-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MRPL40-2:1	chr22	 19409214	 19412213	+	lnc-MRPL40-2	lnc-MRPL40-2:1	ENSG00000248786	AC000079.1	HIRA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-20.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50chr22:19399214-19419219"	NA	inner
CUST_40156_PI429285431	3.5121822	P	1.2483217	A	4.80274929029583	0	lncRNA	40994-1_{1..2587}	n407842|NR_027397|lncRNA|Homosapiens||RefGeneNoncode|NR_027397||7.0178400|-0.3486291	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407842|NR_027397|lncRNA|Homosapiens||RefGeneNoncode|NR_027397||7.0178400|-0.3486291	chr1	170501262	170503848	+	NA	NA	NA	NA	GORAB	NA	chr1:170501263-170522974	inter
CUST_27315_PI429285431	1.0704097	A	1.2629299	A	0.875075742222505	0	lncRNA	28875-1_{1..481}	n324469|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041310|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041310|-1.0935900|-0.5330746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324469|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041310|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041310|-1.0935900|-0.5330746	chr6	 80570018	 80570498	-	NA	NA	NA	NA	NA	NA	NA	inner
CUST_24027_PI429285431	0.88061845	A	0.87630546	A	1.00299400998001	0	lncRNA	25579-1_{1..499}	lnc-ANO6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANO6-1:1	chr12	 45496840	 45497338	+	lnc-ANO6-1	lnc-ANO6-1:1	ENSG00000257319.1	RP11-478B9.1	NA	NA	NA	inter
CUST_40112_PI429285431	7.2437906	P	7.7114263	P	0.723148729049241	0	lncRNA	40957-1_{1..1955}	n407557|NR_027015|lncRNA|Homosapiens||RefGeneNoncode|NR_027015||3.5405600|-0.1372345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407557|NR_027015|lncRNA|Homosapiens||RefGeneNoncode|NR_027015||3.5405600|-0.1372345	chr11	  3819131	  3821085	+	NA	NA	NA	NA	NUP98	NA	chr11:3809131-3819022	inner
CUST_18652_PI429285431	0.90192866	A	1.0961157	A	0.87406529377793	0	lncRNA	20355-1_{1..382}	lnc-SDSL-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SDSL-6:4	chr12	114551146	114551527	+	lnc-SDSL-6	lnc-SDSL-6:4	ENSG00000257997	RP11-100F15.2	NA	NA	NA	inter
CUST_5864_PI429285431	4.239826	P	4.619962	P	0.768365154970726	0	lncRNA	5793-1_{1..521}	"transcript_id ""ENST00000592842.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592842.1"" | genecode_v17"	chr17	 42004931	 42005451	+	ENSG00000267420.1	ENST00000592842.1	RP11-527L4.6	RP11-527L4.6-001	PPY	"hg19_refFlat_RDM1:range=chr17:34245346-342572865'pad=0,hg19_refFlat_RDM1:range=chr17:34245346-342572865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RDM1:range=chr17:34245346-342577315'pad=0,hg19_refFlat_RDM1:range=chr17:34245346-342577315'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr17:42018172-42019833"	NA	inter
CUST_35393_PI429285431	2.3671353	A	1.455977	A	1.88055473794034	0	lncRNA	36800-1_{1..1128}	n342448|CR602790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4941|NULL|-0.7937760|-0.0901294	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342448|CR602790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4941|NULL|-0.7937760|-0.0901294	chr2	132291180	132292307	-	NA	NA	NA	NA	CCDC74A	NA	chr2:132285492-132291239	inter
CUST_29654_PI429285431	6.986436	P	7.1812687	P	0.8736742043815	0	lncRNA	31416-1_{1..337}	n333275|AY027770|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083270|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083270|1.5982400|-0.3475018	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333275|AY027770|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083270|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083270|1.5982400|-0.3475018	chr5	 68470752	 68471088	+	NA	NA	NA	NA	CCNB1	NA	chr5:68462913-68474072	inner
CUST_38845_PI429285431	3.9985948	P	3.905236	P	1.06685107499243	0	lncRNA	39837-1_{1..2301}	n384667|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jym.1||-1.3325800|-0.3942156	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n384667|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jym.1||-1.3325800|-0.3942156	chr5	 69428358	 69430658	-	NA	NA	NA	NA	LOC100652864	"hg19_refFlat_CDH12:range=chr5:21751846-220787855'pad=0,hg19_refFlat_CDH12:range=chr5:21751846-220787855'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00chr5:69428502-69440659"	NA	inter
CUST_7522_PI429285431	0.8835814	A	2.0304723	A	0.451597404644994	0	lncRNA	9161-1_{1..382}	lnc-EMP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EMP1-1:2	chr12	 13700254	 13700635	+	lnc-EMP1-1	lnc-EMP1-1:2	ENSG00000256306	RP11-4N23.1	NA	NA	NA	inter
CUST_42257_PI429285431	5.4670725	P	5.4817553	P	0.989874272470685	0	lncRNA	44577-1_{1..118}	ENST00000516048 ncrna:rRNA chromosome:GRCh37:12:66460001:66460118:1 gene:ENSG00000251857 gene_biotype:rRNA transcript_biotype:rRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516048 ncrna:rRNA chromosome:GRCh37:12:66460001:66460118:1 gene:ENSG00000251857 gene_biotype:rRNA transcript_biotype:rRNA	chr12	 66460001	 66460118	+	ENSG00000251857	ENST00000516048	NA	NA	NA	NA	NA	inter
CUST_8774_PI429285431	0.89032334	A	0.9034569	A	0.990937821227065	0	lncRNA	10317-1_{1..3000}	lnc-RPIA-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPIA-1:2	chr2	 89105630	 89108629	+	lnc-RPIA-1	lnc-RPIA-1:2	ENSG00000230006	ANKRD36BP2	NA	NA	NA	inter
CUST_45338_PI429285431	4.5433636	P	2.7296941	A	3.51535283628943	0	lncRNA	49776-2_{3001..4382}	"gi|305632840|ref|NR_036592.1| Homo sapiens endogenous Bornavirus-like nucleoprotein 2 pseudogene (LOC100506710), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|305632840|ref|NR_036592.1| Homo sapiens endogenous Bornavirus-like nucleoprotein 2 pseudogene (LOC100506710), non-coding RNA"	Chr9	 37082893	 37084274	+	100506710	NR_036592.1	NA	NA	NA	NA	NA	inter
CUST_26408_PI429285431	4.2302136	P	4.4222946	P	0.875342182296368	0	lncRNA	27915-1_{1..836}	lnc-SESN3-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SESN3-2:6	chr11	 94706437	 94707272	-	lnc-SESN3-2	lnc-SESN3-2:6	ENSG00000150316.7	CWC15	KDM4D	NA	chr11:94706845-94716708	inner
CUST_51715_PI429285431	5.523759	P	5.340214	P	1.1356710381345	0	lncRNA	55272-1_{1..415}	hg19_lincRNAsTranscripts_TCONS_l2_00011970 range=chr18:11619804-11621002 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011970 range=chr18:11619804-11621002 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 11619804	 11620218	-	NA	NA	NA	NA	AMAC1L1	NA	chr18:11609804-11610611	inter
CUST_31798_PI429285431	4.5355372	P	3.7860737	P	1.6811675326576	0	lncRNA	33536-1_{1..1394}	n338340|AK024595|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|734|NULL|-0.9832870|-0.2080614	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338340|AK024595|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|734|NULL|-0.9832870|-0.2080614	chr19	 15370204	 15371597	+	NA	NA	NA	NA	BRD4	NA	chr19:15360204-15381598	inner
CUST_29292_PI429285431	4.120705	P	3.0526907	P	2.09654573190198	0	lncRNA	31043-1_{1..363}	n332418|AB426824|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000487346|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000487346|-0.2115550|-0.1511979	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332418|AB426824|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000487346|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000487346|-0.2115550|-0.1511979	chr10	 88277725	 88278087	-	NA	NA	NA	NA	WAPAL	NA	chr10:88267725-88281541	inner
CUST_36005_PI429285431	1.2977725	A	1.019475	A	1.21276287867138	0	lncRNA	37340-1_{1..1884}	n344617|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_165|NULL|-1.5539000|-0.2399812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344617|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_165|NULL|-1.5539000|-0.2399812	chr3	154968294	154970177	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013285	4.6640544	P	4.94346	P	0.823930412183359	0	lncRNA	ENST00000435968	NA	NA	NA	NA	XLOC_l2_013734	NA	ENST00000435968	THC2532253	NA	"BROAD Institute lincRNA (XLOC_l2_013734), lincRNA [TCONS_l2_00026411]"	chr7:20000551-19958831	hs|7p21.1	Agilent_HUMAN_G3V2	ENST00000435968	ENST00000435968	chr7	 19958831	 20000551	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42140_PI429285431	3.8100939	P	3.2105818	A	1.51520405828211	0	lncRNA	44157-1_{1..88}	ENST00000583139 ncrna:miRNA chromosome:GRCh37:3:124870309:124870396:-1 gene:ENSG00000264986 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583139 ncrna:miRNA chromosome:GRCh37:3:124870309:124870396:-1 gene:ENSG00000264986 gene_biotype:miRNA transcript_biotype:miRNA	chr3	124870309	124870396	-	ENSG00000264986	ENST00000583139	NA	NA	SLC12A8	NA	chr3:124860309-124880396	inner
CUST_38313_PI429285431	13.098487	P	13.1403885	P	0.971373813822169	0	lncRNA	39362-1_{1..1367}	n382009|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001utu.2||4.5887200|-0.1628514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n382009|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001utu.2||4.5887200|-0.1628514	chr13	 32420919	 32422285	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1887_PI429285431	2.7949648	A	2.5449934	A	1.18918354038341	0	lncRNA	1877-1_{1..454}	"transcript_id ""ENST00000510592.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510592.1"" | genecode_v17"	chr4	132851186	132851639	-	ENSG00000251555.1	ENST00000510592.1	RP11-745L13.2	RP11-745L13.2-001	NA	NA	NA	inter
CUST_38397_PI429285431	2.689346	A	3.1468506	A	0.728244799992689	0	lncRNA	39434-1_{1..3000}	n382330|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yxd.2||-1.3837000|-0.4524243	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n382330|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yxd.2||-1.3837000|-0.4524243	chr15	 25230006	 25233005	+	NA	NA	NA	NA	SNRPN	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80chr15:25220006-25243379"	NA	inter
CUST_16144_PI429285431	0.892846	A	1.2320366	A	0.790484675729109	0	lncRNA	17849-1_{1..1425}	lnc-CTH-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTH-1:3	chr1	 71250869	 71252293	+	lnc-CTH-1	lnc-CTH-1:3	XLOC_000246	linc-FPGT-12	NA	NA	NA	inter
CUST_24670_PI429285431	0.8916116	A	1.2795506	A	0.764220572456912	0	lncRNA	26217-1_{1..421}	lnc-DHCR7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DHCR7-2:1	chr11	 70417398	 70417818	-	lnc-DHCR7-2	lnc-DHCR7-2:1	ENSG00000224119.1	AP001271.5	SHANK2	NA	chr11:70407398-70427428	inner
CUST_7937_PI429285431	2.5442894	A	2.0485768	A	1.41001704230482	0	lncRNA	9549-1_{1..1759}	lnc-CT47A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CT47A1-1:1	chrX	120181712	120183470	-	lnc-CT47A1-1	lnc-CT47A1-1:1	ENSG00000251641	ENST00000513510	GLUD2	"hg19_refFlat_GLUD1:range=chr10:88811508-888545265'pad=0,hg19_refFlat_GLUD1:range=chr10:88811508-888545265'pad=0 3'pad=0 strand=- repeatMasking=none,-100.60;hg19_refFlat_GLUD2:range=chrX:120181539-1201832155'pad=0,hg19_refFlat_GLUD2:range=chrX:120181539-1201832155'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.60chrX:120171712-120183796"	NA	inner
CUST_17561_PI429285431	0.90583146	A	0.9216215	A	0.989114854938992	0	lncRNA	19289-1_{1..656}	lnc-LBR-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-LBR-1:2	chr1	225652925	225653580	-	lnc-LBR-1	lnc-LBR-1:2	XLOC_001230	linc-LBR	NA	NA	NA	inter
CUST_12051_PI429285431	5.136734	P	4.198769	P	1.91582395770249	0	lncRNA	13637-1_{1..788}	lnc-GLI2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLI2-3:2	chr2	121361343	121362130	+	lnc-GLI2-3	lnc-GLI2-3:2	XLOC_001642	linc-GLI2-2	NA	NA	NA	inter
CUST_21218_PI429285431	0.89245355	A	1.7305819	A	0.559368783813806	0	lncRNA	22843-1_{1..413}	lnc-PAX6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAX6-2:2	chr11	 32062654	 32063066	-	lnc-PAX6-2	lnc-PAX6-2:2	ENSG00000254584.1	RP1-17K7.2	NA	NA	NA	inter
LNCA_21_P0007509	0.9012378	A	0.9219519	A	0.985744663372495	0	lncRNA	TCONS_00020260	NA	NA	NA	NA	XLOC_010236	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010236), lincRNA [TCONS_00020260]"	chr12:125510560-125510501	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00020260	TCONS_00020260	chr12	125510501	125510560	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21381_PI429285431	0.9027845	A	1.3379939	A	0.739586399551114	0	lncRNA	23003-1_{1..582}	lnc-C2orf42-3:29	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:29	chr2	 70313256	 70313837	-	lnc-C2orf42-3	lnc-C2orf42-3:29	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_29448_PI429285431	2.9157352	P	3.189287	P	0.827280338521655	0	lncRNA	31205-1_{1..554}	n332850|AF075063|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066085|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066085|-1.3449100|-0.4269090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n332850|AF075063|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000066085|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000066085|-1.3449100|-0.4269090	chr16	 15506577	 15507130	+	NA	NA	NA	NA	MPV17L	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30chr16:15496577-15503543"	NA	inter
CUST_16508_PI429285431	0.89109945	A	0.8968866	A	0.995996687998302	0	lncRNA	18208-1_{1..696}	lnc-C15orf2-2:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-2:15	chr15	 24791191	 24791886	+	lnc-C15orf2-2	lnc-C15orf2-2:15	XLOC_011181	linc-C15orf2-1	NA	NA	NA	inter
CUST_33916_PI429285431	7.1558137	P	7.1193695	P	1.02558296214973	0	lncRNA	35458-1_{1..2176}	n340710|AK130315|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3173|NULL|-1.1423500|-0.4467036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340710|AK130315|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3173|NULL|-1.1423500|-0.4467036	chr5	158470617	158472792	-	NA	NA	NA	NA	EBF1	NA	chr5:158460617-158482793	inner
CUST_36985_PI429285431	9.002602	P	8.53798	P	1.37995574432631	0	lncRNA	38130-1_{1..513}	n345446|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_995|NULL|-1.5540700|-0.3143055	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345446|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_995|NULL|-1.5540700|-0.3143055	chr1	 85219600	 85220112	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18654_PI429285431	5.9794097	P	6.7759295	P	0.575736347201289	0	lncRNA	20357-1_{1..943}	lnc-VAMP1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-VAMP1-1:5	chr12	  6560635	  6561577	-	lnc-VAMP1-1	lnc-VAMP1-1:5	ENSG00000215039	AC005840.1	TAPBPL	"hg19_refFlat_CD27:range=chr12:6554262-65605585'pad=0,hg19_refFlat_CD27:range=chr12:6554262-65605585'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30chr12:6561177-6570678"	NA	inter
LNCA_21_P0004519	0.97787064	A	0.8986965	A	1.05641313163374	0	lncRNA	TCONS_00010742	NA	NA	NA	NA	XLOC_004475	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004475), lincRNA [TCONS_00010742]"	chr5:92909267-92909326	hs|5q15	Agilent_HUMAN_G3V2	TCONS_00010742	TCONS_00010742	chr5	 92909267	 92909326	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12994_PI429285431	6.7231455	P	6.741044	P	0.987670345994009	0	lncRNA	14621-1_{1..857}	lnc-CEBPB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CEBPB-1:1	chr20	 48789739	 48790595	+	lnc-CEBPB-1	lnc-CEBPB-1:1	XLOC_013559	linc-CEBPB-1	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70"	NA	inter
CUST_30877_PI429285431	5.196274	P	4.9828086	P	1.15946992579344	0	lncRNA	32665-1_{1..282}	n336885|AY750962|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332247|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332247|1.5394100|-0.1035972	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336885|AY750962|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332247|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332247|1.5394100|-0.1035972	chr6	152129048	152129329	+	NA	NA	NA	NA	ESR1	NA	chr6:152119048-152139499	inner
CUST_43459_PI429285431	1.2033715	A	3.019502	A	0.283981627275946	0	lncRNA	48263-1_{1..596}	"gi|336285448|ref|NR_038827.1| Homo sapiens KIAA0494 antisense RNA 1 (KIAA0494-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336285448|ref|NR_038827.1| Homo sapiens KIAA0494 antisense RNA 1 (KIAA0494-AS1), transcript variant 1, non-coding RNA"	Chr1	 47139708	 47140303	+	100130197	NR_038827.1	NA	NA	NA	"hg19_refFlat_EFCAB14:range=chr1:47144133-471837595'pad=0,hg19_refFlat_EFCAB14:range=chr1:47144133-471837595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
LNCA_21_P0009724	4.6886044	P	4.5156612	P	1.12735602640829	0	lncRNA	TCONS_00027057	NA	NA	NA	NA	XLOC_013100	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013100), lincRNA [TCONS_00027057]"	chr19:46704472-46704531	hs|19q13.32	Agilent_HUMAN_G3V2	TCONS_00027057	TCONS_00027057	chr19	 46704472	 46704531	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15577_PI429285431	4.4238834	P	4.142602	P	1.21527380991014	0	lncRNA	17261-1_{1..463}	lnc-TBPL2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBPL2-1:6	chr14	 56045324	 56045786	-	lnc-TBPL2-1	lnc-TBPL2-1:6	XLOC_011036	linc-TBPL2-3	KTN1	NA	chr14:56046925-56055769	inter
CUST_5609_PI429285431	0.9032156	A	1.0192875	A	0.922696506821632	0	lncRNA	5537-1_{1..1054}	"transcript_id ""ENST00000577171.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577171.1"" | genecode_v17"	chr16	 73265954	 73267007	+	ENSG00000261227.2	ENST00000577171.1	AC140912.1	AC140912.1-002	NA	NA	NA	inter
CUST_38774_PI429285431	0.9178122	A	1.2536585	A	0.792319217520625	0	lncRNA	39766-1_{1..2170}	n384398|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fza.2||0.1206900|-0.2355936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n384398|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003fza.2||0.1206900|-0.2355936	chr3	197937115	197939284	+	NA	NA	NA	NA	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.42"	NA	inter
CUST_8150_PI429285431	0.8833452	A	0.8842885	A	0.99934636797512	0	lncRNA	9753-1_{1..1227}	lnc-MFAP5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MFAP5-1:1	chr12	  8930460	  8931686	-	lnc-MFAP5-1	lnc-MFAP5-1:1	ENSG00000249118	ENST00000507192	RIMKLB	NA	chr12:8920460-8929787	inter
CUST_13090_PI429285431	0.8948902	A	0.90539384	A	0.992745870683984	0	lncRNA	14714-4_{9001..9590}	lnc-SLITRK5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK5-1:2	chr13	 88353720	 88354309	+	lnc-SLITRK5-1	lnc-SLITRK5-1:2	XLOC_010463	linc-GPC5-8	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30"	NA	inter
CUST_14977_PI429285431	5.4841657	P	5.8330874	P	0.785170731421398	0	lncRNA	16640-1_{1..1551}	lnc-AC008060.7.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC008060.7.1-1:1	chr7	155187741	155189291	+	lnc-AC008060.7.1-1	lnc-AC008060.7.1-1:1	XLOC_006305	linc-EN2-2	NA	NA	NA	inter
CUST_30274_PI429285431	2.6411731	A	2.1204364	A	1.4346876721018	0	lncRNA	32050-1_{1..214}	n335167|AY373434|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000253328|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000253328|2.0900200|-0.0322105	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335167|AY373434|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000253328|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000253328|2.0900200|-0.0322105	chr12	 52912730	 52912943	-	NA	NA	NA	NA	KRT5	NA	chr12:52908359-52914243	inner
CUST_30413_PI429285431	0.8756458	A	0.9093928	A	0.976879825680678	0	lncRNA	32193-1_{1..234}	n335547|BC071806|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264624|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264624|-1.3988200|-0.4343870	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n335547|BC071806|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264624|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264624|-1.3988200|-0.4343870	chr18	 60818319	 60818552	-	NA	NA	NA	NA	BCL2	NA	chr18:60808319-60828553	inner
LNCA_21_P0007618	0.87416315	A	0.876925	A	0.998087462694086	0	lncRNA	TCONS_00021202	NA	NA	NA	NA	XLOC_009859	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009859), lincRNA [TCONS_00021202]"	chr12:103972205-103972264	hs|12q23.3	Agilent_HUMAN_G3V2	TCONS_00021202	TCONS_00021202	chr12	103972205	103972264	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23878_PI429285431	5.7878327	P	5.845964	P	0.960507443977075	0	lncRNA	25437-1_{1..489}	lnc-FSIP1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FSIP1-5:1	chr15	 39719299	 39719787	-	lnc-FSIP1-5	lnc-FSIP1-5:1	ENSG00000259345.1	RP11-624L4.1	NA	NA	NA	inter
CUST_16972_PI429285431	1.1443516	A	0.87525547	A	1.20505260767244	0	lncRNA	18684-1_{1..3000}	lnc-S1PR1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-S1PR1-2:2	chr1	101632013	101635012	+	lnc-S1PR1-2	lnc-S1PR1-2:2	XLOC_000318	linc-S1PR1	NA	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60"	NA	inter
CUST_12034_PI429285431	1.9102427	A	0.9029418	A	2.01014684941052	0	lncRNA	13618-1_{1..465}	lnc-TXNRD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TXNRD1-1:1	chr12	104762411	104762875	+	lnc-TXNRD1-1	lnc-TXNRD1-1:1	XLOC_009863	linc-CHST11-2	NA	NA	NA	inter
CUST_43835_PI429285431	6.7382345	P	6.5889606	P	1.10901117272996	0	lncRNA	48559-1_{1..1120}	"gi|310118917|ref|XR_109978.1| PREDICTED: Homo sapiens uncharacterized LOC100506088 (LOC100506088), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310118917|ref|XR_109978.1| PREDICTED: Homo sapiens uncharacterized LOC100506088 (LOC100506088), misc_RNA"	Chr2	 45157116	 45158235	-	100506088	XR_109978.2	NA	NA	NA	NA	NA	inter
CUST_8291_PI429285431	5.020858	P	5.58855	P	0.674695292042356	0	lncRNA	9876-1_{1..2272}	lnc-HPS6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HPS6-1:1	chr10	103597334	103599605	+	lnc-HPS6-1	lnc-HPS6-1:1	ENSG00000248959	AC010789.1	C10orf76	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.50chr10:103605356-103609032"	NA	inner
CUST_8914_PI429285431	3.1259065	P	4.0573125	P	0.524347082443498	0	lncRNA	10449-1_{1..555}	lnc-UBE2N-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-UBE2N-2:6	chr12	 93960840	 93961394	-	lnc-UBE2N-2	lnc-UBE2N-2:6	ENSG00000246985	RP11-887P2.1	SOCS2	NA	chr12:93963598-93969978	inter
LNCA_21_P0004069	0.87514925	A	0.875998	A	0.999411864350114	0	lncRNA	ENST00000514942	NA	NA	NA	NA	XLOC_004592	NA	ENST00000514942	NA	NA	"BROAD Institute lincRNA (XLOC_004592), lincRNA [TCONS_00009532]"	chr5:142941201-142942081	hs|5q31.3	Agilent_HUMAN_G3V2	ENST00000514942	ENST00000514942	chr5	142941201	142942081	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009387	3.305242	P	4.0087667	P	0.614070115788623	0	lncRNA	ENST00000444464	XR_109456	XR_109456	NA	Hs.615628	XLOC_012170	NA	ENST00000444464	THC2674252	NA	"PREDICTED: Homo sapiens hypothetical LOC100506643 (LOC100506643), miscRNA [XR_109456]"	chr17:31233282-31233341	hs|17q11.2	Agilent_HUMAN_G3V2	ENST00000444464	ENST00000444464	chr17	 31233282	 31233341	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005756	1.4801894	A	0.87619525	A	1.51991869325398	0	lncRNA	TCONS_00014840	NA	NA	NA	NA	XLOC_006908	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006908), lincRNA [TCONS_00014840]"	chr8:120050395-120050454	hs|8q24.12	Agilent_HUMAN_G3V2	TCONS_00014840	TCONS_00014840	chr8	120050395	120050454	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48133_PI429285431	0.89534086	A	0.8859612	A	1.00652266541321	0	lncRNA	52001-1_{1..1661}	"gi|310110189|ref|XR_111182.1| PREDICTED: Homo sapiens uncharacterized LOC399900 (LOC399900), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310110189|ref|XR_111182.1| PREDICTED: Homo sapiens uncharacterized LOC399900 (LOC399900), misc_RNA"	NA	NA	NA	NA	NA	XR_111182.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60"	NA	Unknown
CUST_2108_PI429285431	6.5161605	P	6.376486	P	1.10165653274114	0	lncRNA	2099-1_{1..467}	"transcript_id ""ENST00000512688.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512688.1"" | genecode_v17"	chr5	 20616514	 20616980	+	ENSG00000251629.2	ENST00000512688.1	RP11-774D14.1	RP11-774D14.1-004	NA	NA	NA	inter
CUST_14117_PI429285431	4.412858	P	4.566538	P	0.898954498987564	0	lncRNA	15766-1_{1..357}	lnc-HPS4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HPS4-2:1	chr22	 26559111	 26559467	-	lnc-HPS4-2	lnc-HPS4-2:1	XLOC_014326	linc-LRP5L-4	SEZ6L	NA	chr22:26565440-26569180	inter
CUST_19597_PI429285431	1.6790059	A	2.4974816	A	0.567040741231571	0	lncRNA	21253-1_{1..480}	lnc-HCRTR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HCRTR1-1:1	chr1	 32114646	 32115125	+	lnc-HCRTR1-1	lnc-HCRTR1-1:1	ENSG00000264078.1	RP11-73M7.9	COL16A1	"hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-14.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.72;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10chr1:32117848-32124972"	NA	inter
CUST_7640_PI429285431	2.27346	A	2.8704655	A	0.6611247821542	0	lncRNA	9271-1_{1..1196}	lnc-PSD4-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PSD4-1:5	chr2	114023053	114024248	+	lnc-PSD4-1	lnc-PSD4-1:5	ENSG00000189223	AC016683.6	PAX8	"hg19_refFlat_PAX8:range=chr2:113976110-1140359715'pad=0,hg19_refFlat_PAX8:range=chr2:113976110-1140359715'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10chr2:114013053-114033747"	NA	inner
CUST_3314_PI429285431	9.022525	P	9.784491	P	0.58969219324521	0	lncRNA	3293-1_{1..2072}	"transcript_id ""ENST00000523502.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523502.1"" | genecode_v17"	chr8	131607545	131609616	-	ENSG00000253656.1	ENST00000523502.1	KB-1568E2.1	KB-1568E2.1-001	NA	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90"	NA	inter
CUST_8794_PI429285431	1.9951602	A	2.2360177	A	0.846242178751561	0	lncRNA	10334-1_{1..489}	lnc-SYNCRIP-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SYNCRIP-2:8	chr6	 86387513	 86388001	-	lnc-SYNCRIP-2	lnc-SYNCRIP-2:8	ENSG00000203875	SNHG5	NA	NA	NA	inter
CUST_25931_PI429285431	0.90355986	A	1.3499906	A	0.733856180641822	0	lncRNA	27450-1_{1..2218}	lnc-RBFA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RBFA-1:1	chr18	 77853168	 77855385	+	lnc-RBFA-1	lnc-RBFA-1:1	ENSG00000261126.1	RP11-795F19.1	NA	NA	NA	inter
CUST_8925_PI429285431	9.617632	P	9.863795	P	0.843135844859438	0	lncRNA	10460-1_{1..541}	lnc-UBQLN2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-UBQLN2-2:3	chrX	 56843753	 56844293	+	lnc-UBQLN2-2	lnc-UBQLN2-2:3	ENSG00000204272	RP11-622K12.1	NA	NA	NA	inter
CUST_31881_PI429285431	0.92239124	A	0.96099293	A	0.973598135285636	0	lncRNA	33613-1_{1..3000}	n338436|AL832086|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|833|NULL|0.2696740|-0.2446237	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338436|AL832086|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|833|NULL|0.2696740|-0.2446237	chr14	 89055574	 89058573	+	NA	NA	NA	NA	ZC3H14	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90chr14:89045574-89068752"	NA	inner
LNCA_21_P0004404	0.8986136	A	0.92365646	A	0.982791401061407	0	lncRNA	TCONS_00010360	NA	NA	NA	NA	XLOC_004856	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004856), lincRNA [TCONS_00010360]"	chr5:67483053-67482994	hs|5q13.1	Agilent_HUMAN_G3V2	TCONS_00010360	TCONS_00010360	chr5	 67482994	 67483053	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1314_PI429285431	3.6152682	P	3.437444	A	1.1311766146106	0	lncRNA	1303-1_{1..458}	"transcript_id ""ENST00000449613.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449613.1"" | genecode_v17"	chr3	 18031515	 18031972	+	ENSG00000226238.1	ENST00000449613.1	AC132807.1	AC132807.1-001	NA	NA	NA	inner
CUST_17591_PI429285431	1.660064	A	0.9071589	A	1.68518280459591	0	lncRNA	19317-1_{1..460}	lnc-NEK6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-NEK6-1:1	chr9	126773234	126773693	+	lnc-NEK6-1	lnc-NEK6-1:1	XLOC_007558	linc-LHX2-1	LHX2	NA	chr9:126773889-126783393	inter
CUST_32065_PI429285431	0.90485734	A	0.91033345	A	0.996211444546839	0	lncRNA	33776-1_{1..3000}	n338627|AL137277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1037|NULL|-1.1253000|-0.3040718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338627|AL137277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1037|NULL|-1.1253000|-0.3040718	chr2	  1033073	  1036072	-	NA	NA	NA	NA	SNTG2	NA	chr2:1023073-1046926	inner
CUST_4839_PI429285431	3.571963	P	2.2740874	A	2.45866572074738	0	lncRNA	4782-1_{1..621}	"transcript_id ""ENST00000554149.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554149.1"" | genecode_v17"	chr14	 57284288	 57284908	-	ENSG00000258776.1	ENST00000554149.1	RP11-1085N6.5	RP11-1085N6.5-002	OTX2	NA	chr14:57274288-57277184	inter
CUST_910_PI429285431	7.3004827	P	6.9364047	P	1.28705883087381	0	lncRNA	899-1_{1..683}	"transcript_id ""ENST00000593355.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593355.1"" | genecode_v17"	chr2	 65677651	 65678333	-	ENSG00000234255.4	ENST00000593355.1	AC012370.3	AC012370.3-003	NA	NA	NA	inter
CUST_51169_PI429285431	3.0083227	P	2.0263274	A	1.97519528810535	0	lncRNA	54790-1_{1..590}	hg19_lincRNAsTranscripts_TCONS_l2_00007758 range=chr14:62024179-62120695 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007758 range=chr14:62024179-62120695 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 62024179	 62024768	+	NA	NA	NA	NA	PRKCH	NA	chr14:62014179-62017698	inter
CUST_21459_PI429285431	7.629751	P	7.5125976	P	1.08459272613083	0	lncRNA	23077-1_{1..440}	lnc-LYZL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LYZL1-3:1	chr10	 29747203	 29747642	+	lnc-LYZL1-3	lnc-LYZL1-3:1	ENSG00000224597.3	RP11-534G20.3	SVIL	"hg19_refFlat_SVIL:range=chr10:29747176-298439875'pad=0,hg19_refFlat_SVIL:range=chr10:29747176-298439875'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80chr10:29746277-29757329"	NA	inner
CUST_32191_PI429285431	0.90793246	A	0.9310354	A	0.984113800478995	0	lncRNA	33888-2_{3001..3180}	n338763|AL713717|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1184|NULL|-0.9991620|-0.4241049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338763|AL713717|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1184|NULL|-0.9991620|-0.4241049	chr13	 72434193	 72434372	-	NA	NA	NA	NA	DACH1	NA	chr13:72421193-72441330	inner
CUST_24196_PI429285431	3.650586	P	3.5643914	P	1.06156639020559	0	lncRNA	25747-1_{1..592}	lnc-FAM131B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM131B-1:2	chr7	142983639	142984230	-	lnc-FAM131B-1	lnc-FAM131B-1:2	ENSG00000231840.1	AC073342.12	CASP2	"hg19_refFlat_TMEM139:range=chr7:142983051-1429839225'pad=0,hg19_refFlat_TMEM139:range=chr7:142983051-1429839225'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.70;hg19_refFlat_TMEM139:range=chr7:142983701-1429839225'pad=0,hg19_refFlat_TMEM139:range=chr7:142983701-1429839225'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.30chr7:142985308-142993756"	NA	inter
CUST_4735_PI429285431	4.5773373	P	4.068869	P	1.42253909301467	0	lncRNA	4679-1_{1..549}	"transcript_id ""ENST00000556197.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556197.1"" | genecode_v17"	chr14	 21338437	 21338985	-	ENSG00000259130.1	ENST00000556197.1	RP11-219E7.3	RP11-219E7.3-001	NA	NA	NA	inter
CUST_25813_PI429285431	0.9014504	A	0.9062168	A	0.996701634875698	0	lncRNA	27334-1_{1..651}	lnc-SLC7A1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC7A1-2:2	chr13	 29824552	 29825202	-	lnc-SLC7A1-2	lnc-SLC7A1-2:2	ENSG00000236758.1	MTUS2-AS2	MTUS2	NA	chr13:29814552-29834691	inner
CUST_19603_PI429285431	3.5052068	P	3.8223763	P	0.80264308188681	0	lncRNA	21259-1_{1..421}	lnc-NEURL4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NEURL4-1:1	chr17	  7257989	  7258409	-	lnc-NEURL4-1	lnc-NEURL4-1:1	ENSG00000263171.1	RP11-542C16.1	ACAP1	NA	chr17:7247989-7254793	inner
LNCA_21_P0007118	3.0214114	P	3.4519176	P	0.742001392788123	0	lncRNA	TCONS_00019041	NA	NA	NA	NA	XLOC_008978	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008978), lincRNA [TCONS_00019041]"	chr10:125702861-125702802	hs|10q26.13	Agilent_HUMAN_G3V2	TCONS_00019041	TCONS_00019041	chr10	125702802	125702861	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6236_PI429285431	0.8827772	A	0.89784616	A	0.989609352522117	0	lncRNA	6161-1_{1..242}	"transcript_id ""ENST00000581632.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581632.1"" | genecode_v17"	chr18	 62773109	 62773350	-	ENSG00000263863.1	ENST00000581632.1	AC007948.1	AC007948.1-001	NA	NA	NA	inter
CUST_47332_PI429285431	0.8998983	A	2.074832	A	0.442904113033475	0	lncRNA	51388-1_{1..1764}	"gi|255652980|ref|NR_028295.1| Homo sapiens long intergenic non-protein coding RNA 29 (LINC00029), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|255652980|ref|NR_028295.1| Homo sapiens long intergenic non-protein coding RNA 29 (LINC00029), non-coding RNA"	Chr20	 61665569	 61667332	-	100144596	NR_028295.1	NA	NA	NA	NA	NA	inter
CUST_33858_PI429285431	0.893125	A	0.89739025	A	0.99704791997097	0	lncRNA	35402-1_{1..215}	n340644|L43347|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3106|NULL|-1.3073100|-0.3835347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340644|L43347|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3106|NULL|-1.3073100|-0.3835347	chr5	138157627	138157841	+	NA	NA	NA	NA	CTNNA1	NA	chr5:138147627-138167842	inner
CUST_11532_PI429285431	0.91224694	A	0.92671657	A	0.990020545302287	0	lncRNA	13104-1_{1..302}	lnc-ATP6V1B2-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP6V1B2-5:5	chr8	 20826298	 20826599	+	lnc-ATP6V1B2-5	lnc-ATP6V1B2-5:5	XLOC_006734	linc-XPO7-4	NA	NA	NA	inter
CUST_14844_PI429285431	3.1480703	A	2.8833075	A	1.20143849936359	0	lncRNA	16506-1_{1..303}	lnc-NSUN6-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NSUN6-6:1	chr10	 19580351	 19580653	-	lnc-NSUN6-6	lnc-NSUN6-6:1	XLOC_008744	linc-NSUN6-2	LOC100652979	NA	chr10:19570351-19577838	inter
CUST_50657_PI429285431	0.90239644	A	0.91544175	A	0.990998438984093	0	lncRNA	54333-1_{1..1095}	hg19_lincRNAsTranscripts_TCONS_l2_00002985 range=chr10:38160888-38175311 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002985 range=chr10:38160888-38175311 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 38160888	 38161982	+	NA	NA	NA	NA	ZNF25	NA	chr10:38183521-38185311	inter
CUST_41781_PI429285431	5.124155	P	5.46214	P	0.791145526847058	0	lncRNA	43354-1_{1..84}	ENST00000578705 ncrna:miRNA chromosome:GRCh37:2:240227157:240227240:1 gene:ENSG00000265215 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578705 ncrna:miRNA chromosome:GRCh37:2:240227157:240227240:1 gene:ENSG00000265215 gene_biotype:miRNA transcript_biotype:miRNA	chr2	240227157	240227240	+	ENSG00000265215	ENST00000578705	NA	NA	HDAC4	NA	chr2:240217157-240237240	inner
CUST_40894_PI429285431	4.9171476	P	5.2206297	P	0.810294301625839	0	lncRNA	41582-1_{1..2970}	n410708|NR_038080|lncRNA|Homosapiens||RefGeneNoncode|NR_038080||2.9932500|-0.0712171	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n410708|NR_038080|lncRNA|Homosapiens||RefGeneNoncode|NR_038080||2.9932500|-0.0712171	chr17	 79276623	 79279592	-	NA	NA	NA	NA	TMEM105	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80chr17:79285070-79293048"	NA	inter
LNCA_21_P0004842	0.88990533	A	0.9058996	A	0.988974844317497	0	lncRNA	TCONS_00011701	NA	NA	NA	NA	XLOC_005181	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005181), lincRNA [TCONS_00011701]"	chr6:14502395-14502454	hs|6p23	Agilent_HUMAN_G3V2	TCONS_00011701	TCONS_00011701	chr6	 14502395	 14502454	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16260_PI429285431	0.9277668	A	1.5082393	A	0.668744719573748	0	lncRNA	17963-1_{1..431}	lnc-SUCLA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUCLA2-1:1	chr13	 48513402	 48513832	-	lnc-SUCLA2-1	lnc-SUCLA2-1:1	XLOC_010602	linc-HTR2A-3	SUCLA2	NA	chr13:48516791-48523514	inter
CUST_22074_PI429285431	1.0621184	A	0.91930646	A	1.10405492062588	0	lncRNA	23680-1_{1..273}	lnc-AC009113.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC009113.1-1:2	chr16	 89364559	 89364831	+	lnc-AC009113.1-1	lnc-AC009113.1-1:2	ENSG00000260279.1	AC137932.5	ANKRD11	NA	chr16:89354559-89374724	inter
CUST_46125_PI429285431	7.928874	P	4.688017	P	9.45355529219064	0	lncRNA	50383-3_{6001..7507}	"gi|238814329|ref|NR_027752.1| Homo sapiens aldehyde dehydrogenase 1 family, member L2 (ALDH1L2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|238814329|ref|NR_027752.1| Homo sapiens aldehyde dehydrogenase 1 family, member L2 (ALDH1L2), transcript variant 2, non-coding RNA"	Chr12	105419562	105421068	-	160428	NR_027752.1	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70"	NA	inter
CUST_51726_PI429285431	0.9092781	A	1.0781513	A	0.88953717246945	0	lncRNA	55281-3_{6001..6914}	hg19_lincRNAsTranscripts_TCONS_l2_00011785 range=chr18:14224236-14256204 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011785 range=chr18:14224236-14256204 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr18	 14230236	 14231149	+	NA	NA	NA	NA	LOC100652806	NA	chr18:14234721-14249475	inter
LNCA_21_P0012328	2.5832894	A	2.5535758	A	1.02080945720039	0	lncRNA	XR_109895	XR_109895	XR_109895	NA	Hs.729446	LOC100507474	uncharacterized LOC100507474	NA	THC2499810	NA	"PREDICTED: Homo sapiens hypothetical LOC100507474 (LOC100507474), miscRNA [XR_109895]"	chr2:132440479-132440538	hs|2q21.1	Agilent_HUMAN_G3V2	XR_109895	XR_109895	chr2	132440479	132440538	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007624	0.8811807	A	0.8920908	A	0.992466217230881	0	lncRNA	TCONS_00020560	NA	NA	NA	NA	XLOC_009876	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009876), lincRNA [TCONS_00020560]"	chr12:109036464-109036523	hs|12q24.11	Agilent_HUMAN_G3V2	TCONS_00020560	TCONS_00020560	chr12	109036464	109036523	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38827_PI429285431	1.5398666	A	0.91143286	A	1.54588579329002	0	lncRNA	39821-1_{1..444}	n384621|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jgz.1||2.5864000|-0.1414987	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384621|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jgz.1||2.5864000|-0.1414987	chr5	 28926976	 28927419	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001919	0.87641585	A	0.88287216	A	0.995534825592883	0	lncRNA	ENST00000429008	NA	NA	NA	NA	XLOC_001691	NA	ENST00000429008	NA	NA	"BROAD Institute lincRNA (XLOC_001691), lincRNA [TCONS_00003012]"	chr2:140136632-140136691	hs|2q22.1	Agilent_HUMAN_G3V2	ENST00000429008	ENST00000429008	chr2	140136632	140136691	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45598_PI429285431	0.8869357	A	0.8926709	A	0.996032553484822	0	lncRNA	49987-1_{1..3000}	"gi|399498579|ref|NR_073073.1| Homo sapiens transcription factor A, mitochondrial (TFAM), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|399498579|ref|NR_073073.1| Homo sapiens transcription factor A, mitochondrial (TFAM), transcript variant 3, non-coding RNA"	Chr10	 60144903	 60147902	+	7019	NR_073073.1	NA	NA	NA	NA	NA	inter
CUST_42066_PI429285431	4.950413	P	5.5732493	P	0.649392982633206	0	lncRNA	43978-1_{1..80}	ENST00000577795 ncrna:miRNA chromosome:GRCh37:12:47581595:47581674:1 gene:ENSG00000263838 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577795 ncrna:miRNA chromosome:GRCh37:12:47581595:47581674:1 gene:ENSG00000263838 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 47581595	 47581674	+	ENSG00000263838	ENST00000577795	NA	NA	NA	NA	NA	inter
CUST_469_PI429285431	0.89122033	A	0.90457886	A	0.990783309085154	0	lncRNA	460-1_{1..492}	"transcript_id ""ENST00000452618.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452618.1"" | genecode_v17"	chr1	165567700	165568191	+	ENSG00000236206.1	ENST00000452618.1	RP11-306I1.2	RP11-306I1.2-001	MGST3	NA	chr1:165600110-165602568	inter
CUST_20100_PI429285431	0.8888381	A	0.8954944	A	0.995396831626658	0	lncRNA	21748-1_{1..1754}	lnc-SPAM1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPAM1-2:1	chr7	123666455	123668208	+	lnc-SPAM1-2	lnc-SPAM1-2:1	ENSG00000241345.1	RP4-630C24.3	TMEM229A	NA	chr7:123670970-123673523	inter
CUST_29660_PI429285431	3.2598915	P	3.216996	P	1.03017933103108	0	lncRNA	31422-1_{1..346}	n333288|AY055427|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083937|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083937|1.6183600|-0.0467335	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333288|AY055427|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083937|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083937|1.6183600|-0.0467335	chr16	  1306637	  1306982	+	NA	NA	NA	NA	UBE2I	NA	chr16:1311004-1318090	inner
CUST_26741_PI429285431	1.7959174	A	2.6358387	A	0.55867404425563	0	lncRNA	28234-1_{1..562}	n200663|NULL|mature_transcript|Homosapiens|HSR-1|fRNAdbv3.0|FR194702|http://www.ncrna.org/frnadb/detail.html?i_name=FR194702|-1.5906100|-0.2278184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n200663|NULL|mature_transcript|Homosapiens|HSR-1|fRNAdbv3.0|FR194702|http://www.ncrna.org/frnadb/detail.html?i_name=FR194702|-1.5906100|-0.2278184	NA	NA	      561	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005405	0.8749119	A	0.8758381	A	0.999358213114726	0	lncRNA	TCONS_00013543	NA	NA	NA	NA	XLOC_006182	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006182), lincRNA [TCONS_00013543]"	chr7:96051648-96051707	hs|7q21.3	Agilent_HUMAN_G3V2	TCONS_00013543	TCONS_00013543	chr7	 96051648	 96051707	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34455_PI429285431	3.1302109	A	1.895846	A	2.35277751194981	0	lncRNA	35931-1_{1..3000}	n341331|D86978|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3800|NULL|19.5145000|-0.3275288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341331|D86978|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3800|NULL|19.5145000|-0.3275288	chr7	135242687	135245686	+	NA	NA	NA	NA	NUP205	NA	chr7:135242662-135333501	inner
CUST_19055_PI429285431	4.589354	P	4.4085097	P	1.13354707035813	0	lncRNA	20746-1_{1..2034}	lnc-FAM72B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM72B-2:1	chr1	120924841	120926874	+	lnc-FAM72B-2	lnc-FAM72B-2:1	ENSG00000233029	RP11-439A17.9	FCGR1B	NA	chr1:120926908-120935944	inner
CUST_7736_PI429285431	0.89088774	A	0.8836144	A	1.00505422483403	0	lncRNA	9365-1_{1..679}	lnc-EMX2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-EMX2-4:1	chr10	119966034	119966712	+	lnc-EMX2-4	lnc-EMX2-4:1	ENSG00000177640	CASC2	NA	NA	NA	inter
LNCA_21_P0009322	0.876212	A	0.87909824	A	0.998001410726146	0	lncRNA	TCONS_00025629	NA	NA	NA	NA	XLOC_012462	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012462), lincRNA [TCONS_00025629]"	chr17:37751078-37751019	hs|17q12	Agilent_HUMAN_G3V2	TCONS_00025629	TCONS_00025629	chr17	 37751019	 37751078	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14758_PI429285431	0.87526894	A	0.87651545	A	0.999136358261349	0	lncRNA	16419-1_{1..2020}	lnc-TMEM132C-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TMEM132C-3:1	chr12	128381374	128383393	+	lnc-TMEM132C-3	lnc-TMEM132C-3:1	XLOC_009946	linc-TMEM132C-3	NA	NA	NA	inter
CUST_37010_PI429285431	0.88819814	A	1.0576085	A	0.889206031909059	0	lncRNA	38150-1_{1..2187}	n345467|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1016|NULL|-1.4733400|-0.2892808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345467|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1016|NULL|-1.4733400|-0.2892808	chr1	160991201	160993387	-	NA	NA	NA	NA	F11R	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70chr1:160981201-160991133"	NA	inter
CUST_27150_PI429285431	6.3661766	P	6.750821	P	0.76596777342127	0	lncRNA	28686-1_{1..605}	n324274|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322475|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322475|-0.6131560|-0.0953134	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324274|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322475|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322475|-0.6131560|-0.0953134	chr7	   172120	   172724	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50249_PI429285431	4.252346	P	5.043918	P	0.577714255607799	0	lncRNA	53972-1_{1..2857}	hg19_lincRNAsTranscripts_TCONS_l2_00029346 range=chr9:68423776-68431050 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029346 range=chr9:68423776-68431050 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 68423776	 68426632	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14641_PI429285431	0.87032	A	1.1125829	A	0.845418214136458	0	lncRNA	16311-1_{1..517}	lnc-TUBGCP3-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TUBGCP3-4:3	chr13	112926741	112927257	-	lnc-TUBGCP3-4	lnc-TUBGCP3-4:3	XLOC_010732	linc-ANKRD10-10	NA	NA	NA	inter
CUST_43931_PI429285431	5.450695	P	4.522123	P	1.90339105992403	0	lncRNA	48641-2_{3001..3219}	"gi|310923210|ref|NR_027145.2| Homo sapiens LIMS3-LOC440895 readthrough (LIMS3-LOC440895), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310923210|ref|NR_027145.2| Homo sapiens LIMS3-LOC440895 readthrough (LIMS3-LOC440895), non-coding RNA"	Chr2	110659009	110659227	+	100271835	NR_027145.2	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20"	NA	inter
LNCA_21_P0005315	1.4680607	A	0.92085207	A	1.46125567734491	0	lncRNA	TCONS_00013201	NA	NA	NA	NA	XLOC_006507	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006507), lincRNA [TCONS_00013201]"	chr7:79085546-79085487	hs|7q21.11	Agilent_HUMAN_G3V2	TCONS_00013201	TCONS_00013201	chr7	 79085487	 79085546	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39627_PI429285431	4.643434	P	4.3894825	P	1.19246878367259	0	lncRNA	40566-1_{1..608}	n387911|NULL|lncRNA|Homosapiens||H-invitationalv7.5|HIT000397421_03||-0.0125255|-0.1818603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387911|NULL|lncRNA|Homosapiens||H-invitationalv7.5|HIT000397421_03||-0.0125255|-0.1818603	chrX	153447673	153448280	+	NA	NA	NA	NA	OPN1MW	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20chrX:153448085-153458281"	NA	inner
CUST_3745_PI429285431	1.6891415	A	0.9609725	A	1.65653536095959	0	lncRNA	3714-1_{1..606}	"transcript_id ""ENST00000429070.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429070.1"" | genecode_v17"	chr10	 81388513	 81389118	-	ENSG00000226676.1	ENST00000429070.1	RP11-589B3.6	RP11-589B3.6-001	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_295_PI429285431	0.91753745	A	0.91559875	A	1.00134470774872	0	lncRNA	287-1_{1..591}	"transcript_id ""ENST00000443104.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443104.1"" | genecode_v17"	chr1	 81001440	 81002030	+	ENSG00000234184.1	ENST00000443104.1	RP5-887A10.1	RP5-887A10.1-003	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30"	NA	inter
CUST_1691_PI429285431	0.91114795	A	0.9307514	A	0.986503825084928	0	lncRNA	1674-1_{1..678}	"transcript_id ""ENST00000515286.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515286.1"" | genecode_v17"	chr4	 11724075	 11724752	+	ENSG00000249631.1	ENST00000515286.1	RP11-281P23.2	RP11-281P23.2-001	NA	NA	NA	inter
CUST_33261_PI429285431	0.9094635	A	0.91201365	A	0.998233932054045	0	lncRNA	34847-1_{1..2465}	n339969|AK092951|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2422|NULL|-1.1185200|-0.4320703	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339969|AK092951|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2422|NULL|-1.1185200|-0.4320703	chr4	 42112871	 42115335	-	NA	NA	NA	NA	BEND4	NA	chr4:42112870-42125336	inner
CUST_16645_PI429285431	0.8915224	A	1.383874	A	0.710865438774931	0	lncRNA	18346-1_{1..909}	lnc-CADM2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CADM2-5:1	chr3	 83281364	 83282272	+	lnc-CADM2-5	lnc-CADM2-5:1	XLOC_002720	linc-CADM2-4	NA	NA	NA	inter
CUST_32778_PI429285431	0.9045696	A	1.0008113	A	0.935466762519345	0	lncRNA	34412-1_{1..971}	n339417|BC015772|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1849|NULL|-1.1095100|-0.2522497	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339417|BC015772|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1849|NULL|-1.1095100|-0.2522497	chr3	108895290	108896260	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2265_PI429285431	5.065563	P	4.382353	P	1.60570848880736	0	lncRNA	2257-1_{1..707}	"transcript_id ""ENST00000507491.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507491.1"" | genecode_v17"	chr5	 92242887	 92243593	-	ENSG00000248528.1	ENST00000507491.1	CTC-458G6.2	CTC-458G6.2-001	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20"	NA	inter
CUST_15171_PI429285431	5.914083	P	5.4373503	P	1.39158853686757	0	lncRNA	16835-1_{1..586}	lnc-C16orf55-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C16orf55-1:2	chr16	 89752302	 89752887	+	lnc-C16orf55-1	lnc-C16orf55-1:2	XLOC_011835	linc-CDK10	CDK10	NA	chr16:89753076-89762704	inter
LNCA_21_P0008790	3.9918506	P	4.6551027	P	0.631453279617422	0	lncRNA	TCONS_00023811	NA	NA	NA	NA	XLOC_011592	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011592), lincRNA [TCONS_00023811]"	chr15:95870383-95870324	hs|15q26.2	Agilent_HUMAN_G3V2	TCONS_00023811	TCONS_00023811	chr15	 95870324	 95870383	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_74_PI429285431	0.9355078	A	1.6372772	A	0.614817698074707	0	lncRNA	69-1_{1..1948}	"transcript_id ""ENST00000407042.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000407042.3"" | genecode_v17"	chr17	 58085489	 58087436	-	ENSG00000267104.1	ENST00000407042.3	TBC1D3P1-DHX40P1	TBC1D3P1-DHX40P1-201	NA	"hg19_refFlat_TBC1D3B:range=chr17:34493375-345024105'pad=0,hg19_refFlat_TBC1D3B:range=chr17:34493375-345024105'pad=0 3'pad=0 strand=- repeatMasking=none,-103.80;hg19_refFlat_TBC1D29:range=chr17:28886733-288904435'pad=0,hg19_refFlat_TBC1D29:range=chr17:28886733-288904435'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_TBC1D3C:range=chr17:34581400-345904545'pad=0,hg19_refFlat_TBC1D3C:range=chr17:34581400-345904545'pad=0 3'pad=0 strand=- repeatMasking=none,-102.20;hg19_refFlat_TBC1D3:range=chr17:36285545-362946005'pad=0,hg19_refFlat_TBC1D3:range=chr17:36285545-362946005'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.80;hg19_refFlat_TBC1D3:range=chr17:36338026-363470815'pad=0,hg19_refFlat_TBC1D3:range=chr17:36338026-363470815'pad=0 3'pad=0 strand=- repeatMasking=none,-103.80;hg19_refFlat_TBC1D3G:range=chr17:34797486-348065185'pad=0,hg19_refFlat_TBC1D3G:range=chr17:34797486-348065185'pad=0 3'pad=0 strand=- repeatMasking=none,-103.80;hg19_refFlat_TBC1D3H:range=chr17:34746434-347554655'pad=0,hg19_refFlat_TBC1D3H:range=chr17:34746434-347554655'pad=0 3'pad=0 strand=- repeatMasking=none,-103.80;hg19_refFlat_TBC1D3F:range=chr17:36285545-362946005'pad=0,hg19_refFlat_TBC1D3F:range=chr17:36285545-362946005'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.80;hg19_refFlat_USP6:range=chr17:5033663-50762735'pad=0,hg19_refFlat_USP6:range=chr17:5033663-50762735'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.00;hg19_refFlat_TBC1D3F:range=chr17:36338026-363470815'pad=0,hg19_refFlat_TBC1D3F:range=chr17:36338026-363470815'pad=0 3'pad=0 strand=- repeatMasking=none,-103.80"	NA	inter
CUST_51529_PI429285431	3.8636625	P	5.1149187	P	0.420082269473368	0	lncRNA	55098-5_{12001..15000}	hg19_lincRNAsTranscripts_TCONS_l2_00011139 range=chr17:20432533-20460098 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011139 range=chr17:20432533-20460098 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 20444533	 20447532	-	NA	NA	NA	NA	CDRT15L2	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70chr17:20422533-20470098"	NA	inter
LNCA_21_P0005959	5.87471	P	6.097629	P	0.856830060074692	0	lncRNA	TCONS_00015398	NA	NA	NA	NA	XLOC_006991	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006991), lincRNA [TCONS_00015398]"	chr8:7333687-7333628	hs|8p23.1	Agilent_HUMAN_G3V2	TCONS_00015398	TCONS_00015398	chr8	  7333628	  7333687	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48704_PI429285431	0.89021933	A	0.89429474	A	0.997179127208591	0	lncRNA	52546-1_{1..217}	hg19_lincRNAsTranscripts_TCONS_l2_00014845 range=chr2:114619045-114632846 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014845 range=chr2:114619045-114632846 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	114619045	114619261	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38200_PI429285431	6.883533	P	7.281179	P	0.759095866103318	0	lncRNA	39269-1_{1..3000}	n381542|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001koj.3||2.9460400|-0.1323672	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381542|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001koj.3||2.9460400|-0.1323672	chr10	 99473480	 99476479	+	NA	NA	NA	NA	MARVELD1	NA	chr10:99473465-99477909	inner
CUST_41160_PI429285431	3.4680283	P	2.8646657	P	1.51925348366246	0	lncRNA	41974-1_{1..88}	ENST00000580330 ncrna:miRNA chromosome:GRCh37:22:20073269:20073356:1 gene:ENSG00000266567 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580330 ncrna:miRNA chromosome:GRCh37:22:20073269:20073356:1 gene:ENSG00000266567 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 20073269	 20073356	+	ENSG00000266567	ENST00000580330	NA	NA	DGCR8	NA	chr22:20067755-20083356	inner
CUST_23322_PI429285431	0.8904715	A	0.90347975	A	0.991023896113165	0	lncRNA	24893-1_{1..1020}	lnc-C2orf42-3:34	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:34	chr2	 70313187	 70314206	-	lnc-C2orf42-3	lnc-C2orf42-3:34	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_16033_PI429285431	1.9645852	A	2.2638142	A	0.812686593430392	0	lncRNA	17730-1_{1..630}	lnc-FBN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBN1-1:1	chr15	 48958789	 48959418	-	lnc-FBN1-1	lnc-FBN1-1:1	XLOC_011474	linc-FBN1	NA	NA	NA	inter
LNCA_21_P0013628	6.655088	P	6.656325	P	0.999142944419765	0	lncRNA	TCONS_l2_00029272	NA	NA	NA	NA	XLOC_l2_015160	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015160), lincRNA [TCONS_l2_00029272]"	chr9:38694343-38694284	hs|9p13.1	Agilent_HUMAN_G3V2	TCONS_l2_00029272	TCONS_l2_00029272	chr9	 38694284	 38694343	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_466_PI429285431	0.89146495	A	0.90482605	A	0.990781544116977	0	lncRNA	457-1_{1..575}	"transcript_id ""ENST00000427339.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427339.1"" | genecode_v17"	chr1	160901529	160902103	-	ENSG00000232188.1	ENST00000427339.1	RP11-312J18.6	RP11-312J18.6-001	NA	NA	NA	inter
CUST_17165_PI429285431	0.897385	A	0.9073514	A	0.993115624577616	0	lncRNA	18875-1_{1..251}	lnc-SPAG1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPAG1-2:2	chr8	101512389	101512639	+	lnc-SPAG1-2	lnc-SPAG1-2:2	XLOC_006882	linc-GRHL2-8	NA	NA	NA	inter
CUST_41752_PI429285431	13.509673	P	13.724433	P	0.861689494423899	0	lncRNA	43298-1_{1..85}	ENST00000408193 ncrna:miRNA chromosome:GRCh37:3:183959193:183959277:1 gene:ENSG00000221120 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408193 ncrna:miRNA chromosome:GRCh37:3:183959193:183959277:1 gene:ENSG00000221120 gene_biotype:miRNA transcript_biotype:miRNA	chr3	183959193	183959277	+	ENSG00000221120	ENST00000408193	NA	NA	VWA5B2	NA	chr3:183949193-183960117	inner
CUST_19053_PI429285431	1.3957956	A	0.8844596	A	1.42536954042997	0	lncRNA	20744-1_{1..2403}	lnc-SREK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SREK1-1:1	chr5	 65866144	 65868546	+	lnc-SREK1-1	lnc-SREK1-1:1	ENSG00000251391	RP11-305P14.1	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90"	NA	inter
CUST_17462_PI429285431	3.615496	P	3.786485	P	0.888233568259115	0	lncRNA	19187-1_{1..3000}	lnc-SLC25A30-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A30-2:4	chr13	 45953450	 45956449	-	lnc-SLC25A30-2	lnc-SLC25A30-2:4	XLOC_010592	linc-TPT1-2	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80"	NA	inter
LNCA_21_P0011978	0.87709016	A	0.88428867	A	0.995022800599483	0	lncRNA	TCONS_l2_00014982	NA	NA	NA	NA	XLOC_l2_008343	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008343), lincRNA [TCONS_l2_00014982]"	chr2:171586262-171586203	hs|2q31.1	Agilent_HUMAN_G3V2	TCONS_l2_00014982	TCONS_l2_00014982	chr2	171586203	171586262	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35203_PI429285431	0.8855029	A	0.89571923	A	0.992943593841684	0	lncRNA	36603-2_{3001..5192}	n342186|AL832760|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4676|NULL|0.2088130|-0.2242136	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342186|AL832760|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4676|NULL|0.2088130|-0.2242136	chr6	170726226	170728417	+	NA	NA	NA	NA	FAM120B	"hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-59.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00chr6:170713226-170714237"	NA	inter
CUST_3963_PI429285431	3.7035742	P	3.993262	P	0.818079072165142	0	lncRNA	3933-1_{1..462}	"transcript_id ""ENST00000542121.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000542121.1"" | genecode_v17"	chr11	 61422137	 61422598	-	ENSG00000255947.1	ENST00000542121.1	RP11-855O10.3	RP11-855O10.3-001	NA	NA	NA	inter
CUST_25624_PI429285431	4.001254	P	3.3746722	P	1.54390266383876	0	lncRNA	27154-1_{1..524}	lnc-DCBLD2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DCBLD2-1:3	chr3	 98451270	 98451793	-	lnc-DCBLD2-1	lnc-DCBLD2-1:3	ENSG00000239445.1	ST3GAL6-AS1	ST3GAL6	NA	chr3:98451572-98461352	inter
CUST_44943_PI429285431	11.8267565	P	10.69813	P	2.18650477643502	0	lncRNA	49455-1_{1..2457}	"gi|158081749|ref|NR_003949.1| Homo sapiens FK506 binding protein 9-like (FKBP9L), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|158081749|ref|NR_003949.1| Homo sapiens FK506 binding protein 9-like (FKBP9L), transcript variant 4, non-coding RNA"	Chr7	 55748767	 55751223	-	360132	NR_003949.1	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20"	NA	inter
CUST_49684_PI429285431	2.6896431	A	1.6084559	A	2.11577644655245	0	lncRNA	53461-1_{1..899}	hg19_lincRNAsTranscripts_TCONS_l2_00025619 range=chr7:5862805-5886733 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025619 range=chr7:5862805-5886733 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  5862805	  5863703	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_583_PI429285431	6.637932	P	6.3886952	P	1.18857817900356	0	lncRNA	575-1_{1..562}	"transcript_id ""ENST00000438158.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438158.1"" | genecode_v17"	chr1	222215047	222215608	-	ENSG00000232679.1	ENST00000438158.1	RP11-400N13.3	RP11-400N13.3-001	NA	NA	NA	inter
CUST_48728_PI429285431	0.91797936	A	0.8745557	A	1.03055654111888	0	lncRNA	52568-2_{3001..4185}	hg19_lincRNAsTranscripts_TCONS_l2_00014895 range=chr2:131160171-131197314 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014895 range=chr2:131160171-131197314 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	131163171	131164355	-	NA	NA	NA	NA	LOC646802	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20chr2:131198341-131198697"	NA	inter
CUST_51232_PI429285431	0.87739533	A	1.7084491	A	0.562118511047487	0	lncRNA	54847-2_{3001..4049}	hg19_lincRNAsTranscripts_TCONS_l2_00008921 range=chr15:23094274-23115198 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008921 range=chr15:23094274-23115198 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 23097274	 23098322	-	NA	NA	NA	NA	NIPA1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-62.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10chr15:23084274-23086843"	NA	inter
CUST_4474_PI429285431	3.6612597	P	3.0588732	P	1.51822593332722	0	lncRNA	4423-1_{1..1310}	"transcript_id ""ENST00000536639.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536639.1"" | genecode_v17"	chr12	126843848	126845157	+	ENSG00000255595.1	ENST00000536639.1	RP4-809F18.1	RP4-809F18.1-001	NA	NA	NA	inter
CUST_30125_PI429285431	6.098564	P	6.1972103	P	0.933908879702373	0	lncRNA	31898-1_{1..398}	n334765|AJ130828|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244610|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244610|1.4544600|-0.0601175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334765|AJ130828|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244610|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244610|1.4544600|-0.0601175	chr1	 21599290	 21599687	-	NA	NA	NA	NA	ECE1	NA	chr1:21589290-21626706	inner
CUST_43876_PI429285431	4.7246847	P	4.4183164	P	1.23659090510707	0	lncRNA	48595-1_{1..759}	"gi|410170433|ref|XR_171081.1| PREDICTED: Homo sapiens all-trans-retinol 13,14-reductase-like (LOC100996506), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170433|ref|XR_171081.1| PREDICTED: Homo sapiens all-trans-retinol 13,14-reductase-like (LOC100996506), misc_RNA"	Chr2	 85541405	 85542163	+	100996506	XR_171081.2	NA	NA	NA	NA	NA	inter
CUST_32111_PI429285431	1.1304058	A	0.8854258	A	1.1850763421812	0	lncRNA	33813-1_{1..999}	n338676|BC025370|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1090|NULL|2.5244700|-0.2151915	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n338676|BC025370|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1090|NULL|2.5244700|-0.2151915	chr13	 44974385	 44975383	-	NA	NA	NA	NA	SERP2	NA	chr13:44964385-44971850	inter
CUST_34772_PI429285431	0.8853431	A	0.8816404	A	1.00256981238723	0	lncRNA	36211-1_{1..2262}	n341681|AK057578|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4152|NULL|-0.9795570|-0.2543029	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341681|AK057578|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4152|NULL|-0.9795570|-0.2543029	chr9	 34561351	 34563612	-	NA	NA	NA	NA	CNTFR	NA	chr9:34551430-34573613	inner
CUST_31631_PI429285431	1.4585574	A	0.874068	A	1.49950818799749	0	lncRNA	33384-1_{1..3000}	n338152|AL137758|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|541|NULL|-0.8219640|-0.3696201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338152|AL137758|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|541|NULL|-0.8219640|-0.3696201	chr15	 97304774	 97307773	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33272_PI429285431	1.1758264	A	0.966308	A	1.15630212306432	0	lncRNA	34857-1_{1..2189}	n339979|S62907|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2432|NULL|7.2955900|-0.2181214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339979|S62907|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2432|NULL|7.2955900|-0.2181214	chr4	 46251705	 46253893	-	NA	NA	NA	NA	GABRA2	NA	chr4:46251575-46392056	inner
CUST_37366_PI429285431	5.3476205	P	5.483993	P	0.909803884822744	0	lncRNA	38471-1_{1..666}	n345815|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1364|NULL|-1.3030000|-0.2423816	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345815|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1364|NULL|-1.3030000|-0.2423816	chr8	144714037	144714702	-	NA	NA	NA	NA	ZNF623	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50chr8:144718373-144725688"	NA	inter
CUST_10296_PI429285431	5.8257327	P	6.0912457	P	0.831902870343032	0	lncRNA	11823-1_{1..740}	lnc-TRAPPC12-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRAPPC12-3:1	chr2	  2876131	  2876870	+	lnc-TRAPPC12-3	lnc-TRAPPC12-3:1	XLOC_001320	linc-TTC15-2	NA	NA	NA	inter
CUST_26167_PI429285431	0.87131226	A	0.873532	A	0.998462576525613	0	lncRNA	27678-1_{1..391}	lnc-THSD4-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-THSD4-3:8	chr15	 72110555	 72110945	+	lnc-THSD4-3	lnc-THSD4-3:8	ENSG00000260503.1	CTD-2524L6.2	MYO9A	NA	chr15:72118351-72120589	inner
CUST_16603_PI429285431	1.1029761	A	0.9208952	A	1.13451910199945	0	lncRNA	18304-1_{1..3000}	lnc-LINC00346-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LINC00346-1:1	chr13	111522092	111525091	-	lnc-LINC00346-1	lnc-LINC00346-1:1	XLOC_010723	linc-CARS2-2	ANKRD10	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_LOC100130451:range=chr2:214142441-2141488025'pad=0,hg19_refFlat_LOC100130451:range=chr2:214142441-2141488025'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10chr13:111530887-111532929"	NA	inter
LNCA_21_P0008945	2.8293474	A	0.8779025	A	3.86761690464292	0	lncRNA	TCONS_00024415	NA	NA	NA	NA	XLOC_011725	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011725), lincRNA [TCONS_00024415]"	chr16:52621407-52624868	hs|16q12.2	Agilent_HUMAN_G3V2	TCONS_00024415	TCONS_00024415	chr16	 52621407	 52624868	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14379_PI429285431	3.3966973	P	3.400672	P	0.997248739574576	0	lncRNA	16040-1_{1..303}	lnc-PDE5A-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE5A-2:4	chr4	120725607	120725909	-	lnc-PDE5A-2	lnc-PDE5A-2:4	XLOC_004058	linc-PDE5A-1	NA	NA	NA	inter
LNCA_21_P0006590	6.547407	P	6.8216987	P	0.826856168638161	0	lncRNA	ENST00000425031	NA	NA	NA	NA	XLOC_008276	NA	ENST00000425031	THC2649420	NA	"BROAD Institute lincRNA (XLOC_008276), lincRNA [TCONS_00017607]"	chrY:2970205-2970264	hs|Yp11.31	Agilent_HUMAN_G3V2	ENST00000425031	ENST00000425031	chrY	  2970205	  2970264	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014763	6.0104117	P	6.3156657	P	0.809299719193857	0	lncRNA	XR_132529	XR_132529	XR_132529	NA	NA	LOC100652839	NA	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652839 (LOC100652839), miscRNA [XR_132529]"	chr7:5632635-5632576	hs|7p22.1	Agilent_HUMAN_G3V2	XR_132529	XR_132529	chr7	  5632576	  5632635	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23208_PI429285431	7.070771	P	7.242917	P	0.887521516001312	0	lncRNA	24780-1_{1..634}	lnc-GNAI1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNAI1-2:1	chr7	 79088852	 79089485	+	lnc-GNAI1-2	lnc-GNAI1-2:1	ENSG00000234456.2	MAGI2-AS3	MAGI2	"hg19_refFlat_MAGI2:range=chr7:77648632-790826365'pad=0,hg19_refFlat_MAGI2:range=chr7:77648632-790826365'pad=0 3'pad=0 strand=- repeatMasking=none,-100.50chr7:79078852-79082890"	NA	inter
CUST_41590_PI429285431	1.2530224	A	0.8956882	A	1.28105658344628	0	lncRNA	42922-1_{1..84}	ENST00000385076 ncrna:miRNA chromosome:GRCh37:11:111383663:111383746:1 gene:ENSG00000207811 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385076 ncrna:miRNA chromosome:GRCh37:11:111383663:111383746:1 gene:ENSG00000207811 gene_biotype:miRNA transcript_biotype:miRNA	chr11	111383663	111383746	+	ENSG00000207811	ENST00000385076	NA	NA	BTG4	NA	chr11:111373663-111383064	inter
CUST_9729_PI429285431	1.6098291	A	0.9661942	A	1.56226035215571	0	lncRNA	11245-1_{1..1006}	lnc-RP11-342M21.2.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-342M21.2.1-1:4	chr15	 67279496	 67280501	-	lnc-RP11-342M21.2.1-1	lnc-RP11-342M21.2.1-1:4	XLOC_011510	linc-LCTL-2	NA	NA	NA	inter
LNCA_21_P0001125	6.3071084	P	6.4134693	P	0.928928267444015	0	lncRNA	TCONS_00000513	NA	NA	NA	NA	XLOC_000816	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000816), lincRNA [TCONS_00000513]"	chr1:45769932-45769873	hs|1p34.1	Agilent_HUMAN_G3V2	TCONS_00000513	TCONS_00000513	chr1	 45769873	 45769932	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009953	0.87189597	A	0.87629724	A	0.9969539208504	0	lncRNA	TCONS_00028138	NA	NA	NA	NA	XLOC_013496	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013496), lincRNA [TCONS_00028138]"	chr20:24047342-24047401	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028138	TCONS_00028138	chr20	 24047342	 24047401	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7099_PI429285431	4.4477277	P	4.4883523	P	0.97223393758548	0	lncRNA	7034-1_{1..574}	"transcript_id ""ENST00000602576.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602576.1"" | genecode_v17"	chrX	 73494177	 73494750	-	ENSG00000230590.3	ENST00000602576.1	FTX	FTX-007	NA	NA	NA	inter
LNCA_21_P0010668	5.571807	P	5.5757303	P	0.997284269951327	0	lncRNA	TCONS_l2_00001738	NA	NA	NA	NA	XLOC_l2_001288	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001288), lincRNA [TCONS_l2_00001738]"	chr1:208848913-208848854	hs|1q32.2	Agilent_HUMAN_G3V2	TCONS_l2_00001738	TCONS_l2_00001738	chr1	208848854	208848913	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35610_PI429285431	1.3550309	A	1.423392	A	0.953720808694775	0	lncRNA	37023-1_{1..899}	n342747|AB126072|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5250|NULL|1.5020000|-0.0376707	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342747|AB126072|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5250|NULL|1.5020000|-0.0376707	chr11	  1628794	  1629692	-	NA	NA	NA	NA	KRTAP5-3	NA	chr11:1628795-1629693	inner
CUST_43077_PI429285431	0.8866901	A	0.9003426	A	0.990581443209932	0	lncRNA	47216-1_{1..127}	ENST00000408436 ncrna:snRNA chromosome:GRCh37:18:19710564:19710690:-1 gene:ENSG00000221363 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408436 ncrna:snRNA chromosome:GRCh37:18:19710564:19710690:-1 gene:ENSG00000221363 gene_biotype:snRNA transcript_biotype:snRNA	chr18	 19710564	 19710690	-	ENSG00000221363	ENST00000408436	NA	NA	NA	NA	NA	inter
CUST_13190_PI429285431	2.1668093	A	0.9279729	A	2.36008104095355	0	lncRNA	14817-1_{1..316}	lnc-ROBO4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ROBO4-1:1	chr11	124771218	124771533	-	lnc-ROBO4-1	lnc-ROBO4-1:1	XLOC_009588	linc-ROBO4	ROBO4	NA	chr11:124761218-124767831	inter
CUST_43842_PI429285431	7.4659758	P	6.577057	P	1.85178781692736	0	lncRNA	48565-2_{3001..3220}	"gi|301500680|ref|NR_024188.2| Homo sapiens protein phosphatase 1, regulatory subunit 21 (PPP1R21), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301500680|ref|NR_024188.2| Homo sapiens protein phosphatase 1, regulatory subunit 21 (PPP1R21), transcript variant 4, non-coding RNA"	Chr2	 48670908	 48671127	+	129285	NR_024188.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0010898	6.9093566	P	5.8010273	P	2.15595833867829	0	lncRNA	TCONS_l2_00003718	NA	NA	NA	NA	XLOC_l2_002069	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002069), lincRNA [TCONS_l2_00003718]"	chr10:96857962-96857903	hs|10q23.33	Agilent_HUMAN_G3V2	TCONS_l2_00003718	TCONS_l2_00003718	chr10	 96857903	 96857962	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009352	4.4311533	P	4.4012957	P	1.02091135253794	0	lncRNA	TCONS_00025743	NA	NA	NA	NA	XLOC_012560	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012560), lincRNA [TCONS_00025743]"	chr17:67355327-67355268	hs|17q24.3	Agilent_HUMAN_G3V2	TCONS_00025743	TCONS_00025743	chr17	 67355268	 67355327	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38528_PI429285431	10.2362	P	11.358184	P	0.459461537302776	0	lncRNA	39540-1_{1..1556}	n383185|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002iil.3||-0.1149420|-0.1754227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383185|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002iil.3||-0.1149420|-0.1754227	chr17	 43295636	 43297191	-	NA	NA	NA	NA	FMNL1	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-15.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.12;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-58.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10chr17:43299292-43309132"	NA	inter
LNCA_21_P0006491	3.191468	P	1.1860049	A	4.01517564436623	0	lncRNA	TCONS_00017156	NA	NA	NA	NA	XLOC_007958	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007958), lincRNA [TCONS_00017156]"	chrX:39797553-39797612	hs|Xp11.4	Agilent_HUMAN_G3V2	TCONS_00017156	TCONS_00017156	chrX	 39797553	 39797612	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6529_PI429285431	0.90010995	A	0.9109175	A	0.992536766463436	0	lncRNA	6472-1_{1..1873}	"transcript_id ""ENST00000425668.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000425668.1"" | genecode_v17"	chr19	 43326015	 43327887	+	ENSG00000225877.1	ENST00000425668.1	AC004603.4	AC004603.4-001	NA	NA	NA	inter
CUST_37626_PI429285431	5.4275713	P	5.7519865	P	0.798622044173624	0	lncRNA	38723-1_{1..417}	n346104|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1654|NULL|-1.2875000|-0.2040222	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346104|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1654|NULL|-1.2875000|-0.2040222	chr3	 75264309	 75264725	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20122_PI429285431	0.9071716	A	0.9155257	A	0.994226112469492	0	lncRNA	21770-1_{1..320}	lnc-LEKR1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LEKR1-3:1	chr3	156886806	156887125	+	lnc-LEKR1-3	lnc-LEKR1-3:1	ENSG00000241770.1	RP11-555M1.3	CCNL1	"hg19_refFlat_KRT18:range=chr12:53342958-533466265'pad=0,hg19_refFlat_KRT18:range=chr12:53342958-533466265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40chr3:156876806-156878482"	NA	inter
LNCA_21_P0006288	0.9019818	A	0.92310256	A	0.985466845523198	0	lncRNA	TCONS_00016395	NA	NA	NA	NA	XLOC_007764	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007764), lincRNA [TCONS_00016395]"	chr9:90717818-90717759	hs|9q22.1	Agilent_HUMAN_G3V2	TCONS_00016395	TCONS_00016395	chr9	 90717759	 90717818	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45666_PI429285431	3.3245037	P	4.2126627	P	0.54030315071092	0	lncRNA	50042-1_{1..1541}	"gi|386268030|ref|NR_047681.1| Homo sapiens B-cell linker (BLNK), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386268030|ref|NR_047681.1| Homo sapiens B-cell linker (BLNK), transcript variant 7, non-coding RNA"	NW_003871070.1	     8097	     9637	+	29760	NR_047681.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007305	0.8984399	A	0.9176336	A	0.986784048790552	0	lncRNA	TCONS_00019546	NA	NA	NA	NA	XLOC_009344	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009344), lincRNA [TCONS_00019546]"	chr11:134344607-134344666	hs|11q25	Agilent_HUMAN_G3V2	TCONS_00019546	TCONS_00019546	chr11	134344607	134344666	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48196_PI429285431	2.30604	A	2.8783286	A	0.672549052559943	0	lncRNA	52059-1_{1..2601}	"gi|410170275|ref|XR_172496.1| PREDICTED: Homo sapiens complement C4-B-like (LOC101060754), partial misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170275|ref|XR_172496.1| PREDICTED: Homo sapiens complement C4-B-like (LOC101060754), partial misc_RNA"	NA	NA	NA	NA	NA	XR_172496.1	NA	NA	NA	NA	NA	Unknown
CUST_11919_PI429285431	0.91712314	A	0.910342	A	1.00471139194179	0	lncRNA	13500-1_{1..1755}	lnc-GPD2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPD2-2:1	chr2	157720635	157722389	+	lnc-GPD2-2	lnc-GPD2-2:1	XLOC_001718	linc-GALNT5-2	NA	NA	NA	inter
LNCA_21_P0008178	11.624735	P	12.44653	P	0.565737614295424	0	lncRNA	TCONS_00022046	NA	NA	NA	NA	XLOC_010647	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010647), lincRNA [TCONS_00022046]"	chr13:65214397-65214338	hs|13q21.31	Agilent_HUMAN_G3V2	TCONS_00022046	TCONS_00022046	chr13	 65214338	 65214397	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28994_PI429285431	1.1948893	A	1.4345192	A	0.846962558995387	0	lncRNA	30718-1_{1..587}	n326478|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033261|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033261|-0.6295180|-0.3763411	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326478|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000033261|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000033261|-0.6295180|-0.3763411	chr1	113194172	113194758	+	NA	NA	NA	NA	CAPZA1	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10chr1:113184172-113214241"	NA	inner
CUST_49217_PI429285431	6.3759413	P	5.3001156	P	2.10792816068915	0	lncRNA	53037-1_{1..1547}	hg19_lincRNAsTranscripts_TCONS_l2_00020919 range=chr4:183938593-183958466 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020919 range=chr4:183938593-183958466 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	183938593	183940139	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23688_PI429285431	1.2783543	A	0.89868784	A	1.30104102998709	0	lncRNA	25253-1_{1..3000}	lnc-ZMYM6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZMYM6-1:1	chr1	 35450799	 35453798	-	lnc-ZMYM6-1	lnc-ZMYM6-1:1	ENSG00000241014.1	RP11-244H3.1	ZMYM6	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90chr1:35451766-35460914"	NA	inner
CUST_14328_PI429285431	0.8918145	A	0.90143657	A	0.993352681131174	0	lncRNA	15986-1_{1..869}	lnc-CLCN3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLCN3-1:2	chr4	170862377	170863245	+	lnc-CLCN3-1	lnc-CLCN3-1:2	XLOC_003772	linc-GALNTL6-7	NA	NA	NA	inter
CUST_42352_PI429285431	4.960708	P	6.0599713	P	0.466754779298157	0	lncRNA	45017-1_{1..136}	ENST00000516903 ncrna:snoRNA chromosome:GRCh37:15:66639545:66639680:-1 gene:ENSG00000252712 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516903 ncrna:snoRNA chromosome:GRCh37:15:66639545:66639680:-1 gene:ENSG00000252712 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 66639545	 66639680	-	ENSG00000252712	ENST00000516903	NA	NA	TIPIN	NA	chr15:66629545-66649054	inner
CUST_22886_PI429285431	5.5499268	P	5.8092957	P	0.835453304530469	0	lncRNA	24463-1_{1..508}	lnc-RP11-432B6.3.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-432B6.3.1-2:2	chr3	159486093	159486600	-	lnc-RP11-432B6.3.1-2	lnc-RP11-432B6.3.1-2:2	ENSG00000241211.1	IQCJ-SCHIP1-AS1	SCHIP1	NA	chr3:159476093-159496243	inner
CUST_27300_PI429285431	0.9102009	A	0.9000065	A	1.00709124425581	0	lncRNA	28858-1_{1..484}	n324452|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041547|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041547|-1.2194700|-0.4179660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324452|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041547|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041547|-1.2194700|-0.4179660	chr6	 94653338	 94653821	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_725_PI429285431	5.335308	P	5.2516184	P	1.05972475602939	0	lncRNA	718-1_{1..469}	"transcript_id ""ENST00000414654.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414654.1"" | genecode_v17"	chr2	  7811735	  7812203	-	ENSG00000230515.1	ENST00000414654.1	AC092580.3	AC092580.3-001	NA	NA	NA	inter
CUST_11658_PI429285431	3.6758866	P	3.4140646	P	1.19899197279763	0	lncRNA	13235-1_{1..608}	lnc-MBOAT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBOAT1-1:1	chr6	 20334365	 20334972	-	lnc-MBOAT1-1	lnc-MBOAT1-1:1	XLOC_005635	linc-MBOAT1-5	NA	NA	NA	inter
CUST_51134_PI429285431	1.1246551	A	2.6556516	A	0.346038268505927	0	lncRNA	54763-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00008040 range=chr14:42052848-42075914 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008040 range=chr14:42052848-42075914 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr14	 42055848	 42058847	-	NA	NA	NA	NA	LRFN5	NA	chr14:42076764-42085914	inter
CUST_39307_PI429285431	3.231018	P	2.7733603	A	1.37331035727876	0	lncRNA	40274-1_{1..1077}	n386318|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gua.2||2.5342300|-0.1435106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386318|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gua.2||2.5342300|-0.1435106	chr22	 23980676	 23981752	-	NA	NA	NA	NA	RGL4	NA	chr22:24033048-24041363	inter
CUST_1515_PI429285431	5.6805987	P	6.2189283	P	0.688567694142535	0	lncRNA	1502-1_{1..571}	"transcript_id ""ENST00000474477.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000474477.1"" | genecode_v17"	chr3	156807670	156808240	+	ENSG00000241135.1	ENST00000474477.1	RP11-6F2.6	RP11-6F2.6-002	NA	NA	NA	inter
CUST_33502_PI429285431	0.8773713	A	1.1247449	A	0.842428646111538	0	lncRNA	35074-1_{1..1700}	n340241|BC042982|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2702|NULL|-1.0544200|-0.3814995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n340241|BC042982|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2702|NULL|-1.0544200|-0.3814995	chr4	144738941	144740640	-	NA	NA	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60"	NA	inter
CUST_28214_PI429285431	1.8614684	A	3.177784	P	0.401559144795261	0	lncRNA	29844-1_{1..493}	n325498|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322425|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322425|-1.0935600|-0.1719267	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325498|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322425|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322425|-1.0935600|-0.1719267	chr2	   714965	   715457	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005130	3.2498095	P	4.556864	P	0.404145166915886	0	lncRNA	TCONS_00012595	NA	NA	NA	NA	XLOC_005458	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005458), lincRNA [TCONS_00012595]"	chr6:126380916-126397406	hs|6q22.32	Agilent_HUMAN_G3V2	TCONS_00012595	TCONS_00012595	chr6	126380916	126397406	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8536_PI429285431	2.3583262	A	1.7916039	A	1.48115466760216	0	lncRNA	10095-1_{1..2519}	lnc-AC011484.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC011484.1-1:1	chr19	 46973212	 46975730	+	lnc-AC011484.1-1	lnc-AC011484.1-1:1	ENSG00000248985	ENST00000503237	PNMAL1	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_PNMAL1:range=chr19:46971818-469742925'pad=0,hg19_refFlat_PNMAL1:range=chr19:46971818-469742925'pad=0 3'pad=0 strand=- repeatMasking=none,-99.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PNMAL1:range=chr19:46971796-469742925'pad=0,hg19_refFlat_PNMAL1:range=chr19:46971796-469742925'pad=0 3'pad=0 strand=- repeatMasking=none,-99.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80chr19:46969748-46974820"	NA	inner
CUST_38928_PI429285431	0.8820317	A	0.89355683	A	0.992043212790695	0	lncRNA	39918-1_{1..2212}	n385040|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qrv.1||0.3600480|-0.3301470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385040|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qrv.1||0.3600480|-0.3301470	chr6	159219681	159221892	-	NA	NA	NA	NA	EZR	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-21.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50chr6:159209681-159231893"	NA	inner
CUST_18437_PI429285431	1.4776859	A	0.9254121	A	1.466395028654	0	lncRNA	20160-1_{1..2826}	lnc-SPATA19-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPATA19-1:3	chr11	133679846	133682671	-	lnc-SPATA19-1	lnc-SPATA19-1:3	ENSG00000255258	RP11-448P19.1	NA	NA	NA	inter
LNCA_21_P0006791	1.5473053	A	0.87599367	A	1.59252015344979	0	lncRNA	ENST00000366253	NA	NA	NA	NA	XLOC_008945	NA	ENST00000366253	NA	NA	"BROAD Institute lincRNA (XLOC_008945), lincRNA [TCONS_00018041]"	chr10:110307792-110307733	hs|10q25.1	Agilent_HUMAN_G3V2	ENST00000366253	ENST00000366253	chr10	110307733	110307792	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4669_PI429285431	0.90250814	A	0.90653414	A	0.997213279585226	0	lncRNA	4615-1_{1..778}	"transcript_id ""ENST00000415193.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415193.1"" | genecode_v17"	chr13	 89867101	 89867878	-	ENSG00000232225.2	ENST00000415193.1	RP11-143O10.1	RP11-143O10.1-001	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20"	NA	inter
CUST_26202_PI429285431	0.8752867	A	0.8756843	A	0.999724442653911	0	lncRNA	27713-1_{1..651}	lnc-TAB3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TAB3-1:1	chrX	 30741828	 30742478	-	lnc-TAB3-1	lnc-TAB3-1:1	ENSG00000243055.1	GK-AS1	GK	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_GK:range=chrX:30671655-307468595'pad=0,hg19_refFlat_GK:range=chrX:30671655-307468595'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_GK2:range=chr4:80327693-803293545'pad=0,hg19_refFlat_GK2:range=chr4:80327693-803293545'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30chrX:30731828-30749579"	NA	inner
CUST_28868_PI429285431	0.88394535	A	0.88856643	A	0.996802035842283	0	lncRNA	30582-1_{1..684}	n326289|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098613|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098613|-1.1594600|-0.2683561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326289|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098613|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098613|-1.1594600|-0.2683561	chr1	190765331	190766014	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30829_PI429285431	0.89355195	A	1.0423987	A	0.901971185007262	0	lncRNA	32616-1_{1..288}	n336774|Z82160|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328186|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328186|1.9178400|-0.0952111	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336774|Z82160|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328186|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328186|1.9178400|-0.0952111	chr2	 89160078	 89160365	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31058_PI429285431	0.8991132	A	0.90803576	A	0.993834438257682	0	lncRNA	32848-1_{1..815}	n337282|BC128124|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389652|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389652|-1.3990500|-0.4358472	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337282|BC128124|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389652|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389652|-1.3990500|-0.4358472	chr11	 73882787	 73883601	+	NA	NA	NA	NA	C2CD3	NA	chr11:73872787-73882064	inner
LNCA_21_P0002937	0.8758905	A	0.8789293	A	0.997895881115962	0	lncRNA	TCONS_00005965	NA	NA	NA	NA	XLOC_002597	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002597), lincRNA [TCONS_00005965]"	chr3:23636715-23636774	hs|3p24.3	Agilent_HUMAN_G3V2	TCONS_00005965	TCONS_00005965	chr3	 23636715	 23636774	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00320492	0.87565583	A	1.4552325	A	0.669160100233641	0	lncRNA	DQ272581	NA	DQ272581	NA	NA	XLOC_l2_013001	NA	NA	THC2506072	NA	"BROAD Institute lincRNA (XLOC_l2_013001), lincRNA [TCONS_l2_00025392]"	chr6:44060297-44060238	hs|6p21.1	Agilent_HUMAN_G3V2	DQ272581	DQ272581	chr6	 44060238	 44060297	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13051_PI429285431	1.3437867	A	1.2277906	A	1.08372303724051	0	lncRNA	14676-1_{1..826}	lnc-ZNF622-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF622-1:2	chr5	 16430895	 16431720	-	lnc-ZNF622-1	lnc-ZNF622-1:2	XLOC_004743	linc-MARCH11-1	NA	NA	NA	inter
CUST_2005_PI429285431	0.88787353	A	0.8840693	A	1.00264037095438	0	lncRNA	1996-1_{1..911}	"transcript_id ""ENST00000505053.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505053.1"" | genecode_v17"	chr4	185910151	185911061	+	ENSG00000248517.1	ENST00000505053.1	RP11-386B13.4	RP11-386B13.4-001	NA	NA	NA	inter
LNCA_21_P0003824	1.1632565	A	0.87717426	A	1.21932459899183	0	lncRNA	TCONS_00008739	NA	NA	NA	NA	XLOC_003422	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003422), lincRNA [TCONS_00008739]"	chr4:1549204-1549263	hs|4p16.3	Agilent_HUMAN_G3V2	TCONS_00008739	TCONS_00008739	chr4	  1549204	  1549263	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8572_PI429285431	1.3060231	A	0.9020074	A	1.32318583928155	0	lncRNA	10130-1_{1..1588}	lnc-SPCS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPCS2-1:1	chr11	 74693547	 74695134	+	lnc-SPCS2-1	lnc-SPCS2-1:1	ENSG00000249164	XLOC_009217	NEU3	NA	chr11:74699950-74705088	inter
CUST_32109_PI429285431	0.8934719	A	1.0240767	A	0.913448438286797	0	lncRNA	33812-1_{1..3000}	n338674|AF245388|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1088|NULL|16.5225000|-0.0727392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338674|AF245388|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1088|NULL|16.5225000|-0.0727392	chr2	 11674241	 11677240	+	NA	NA	NA	NA	GREB1	NA	chr2:11674242-11761152	inner
LNCA_21_P0005301	0.870065	A	0.87379646	A	0.997416891004048	0	lncRNA	ENST00000425077	NA	NA	NA	NA	XLOC_006426	NA	ENST00000425077	NA	NA	"BROAD Institute lincRNA (XLOC_006426), lincRNA [TCONS_00013162]"	chr7:44824803-44824744	hs|7p13	Agilent_HUMAN_G3V2	ENST00000425077	ENST00000425077	chr7	 44824744	 44824803	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_319_PI429201921	1.4403069	A	1.0693051	A	1.29325054542983	0	lncRNA	214-3_{6001..7568}	TC02004868.hg.1	TCONS_l2_00016116-XLOC_l2_008483 // Broad TUCP // linc-IQCA1-1 chr2:-:237957241-237964810 // chr2 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr2:-:237957241-237964810	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00016116-XLOC_l2_008483	linc-IQCA1-1	chr2	237957241	237964810	-	NA	NA	NA	NA	CYP4Z1	NA	chr1:47552325-47583992	Unknown
CUST_34261_PI429285431	0.9232451	A	0.98888427	A	0.955521890451915	0	lncRNA	35762-1_{1..1176}	n341119|BC016876|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3585|NULL|-1.1863700|-0.2790358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341119|BC016876|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3585|NULL|-1.1863700|-0.2790358	chr11	111384767	111385942	-	NA	NA	NA	NA	BTG4	"hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.50chr11:111374767-111383064"	NA	inner
CUST_9415_PI429285431	1.626671	A	0.9109844	A	1.64226460979046	0	lncRNA	10918-1_{1..734}	lnc-FOXD4L3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXD4L3-2:2	chr9	 70945042	 70945775	+	lnc-FOXD4L3-2	lnc-FOXD4L3-2:2	XLOC_007390	linc-PGM5-1	NA	NA	NA	inter
CUST_8685_PI429285431	2.4735904	A	2.0061426	A	1.3826613059813	0	lncRNA	10233-1_{1..1701}	lnc-FAM166A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-FAM166A-1:1	chr9	140147615	140149315	-	lnc-FAM166A-1	lnc-FAM166A-1:1	ENSG00000256529	BX255925.2	COBRA1	"hg19_refFlat_C9orf173:range=chr9:140145739-1401479155'pad=0,hg19_refFlat_C9orf173:range=chr9:140145739-1401479155'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.90;hg19_refFlat_C9orf173:range=chr9:140145739-1401476975'pad=0,hg19_refFlat_C9orf173:range=chr9:140145739-1401476975'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.90chr9:140149759-140157949"	NA	inner
CUST_49229_PI429285431	0.90520895	A	0.90910494	A	0.997303148571151	0	lncRNA	53049-1_{1..264}	hg19_lincRNAsTranscripts_TCONS_l2_00021478 range=chr4:188486835-188503621 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021478 range=chr4:188486835-188503621 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	188486835	188487098	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5101_PI429285431	0.92365175	A	0.8961417	A	1.0192514788078	0	lncRNA	5041-1_{1..448}	"transcript_id ""ENST00000561964.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561964.1"" | genecode_v17"	chr15	 24480225	 24480672	+	ENSG00000261621.1	ENST00000561964.1	RP11-580I1.2	RP11-580I1.2-001	NA	NA	NA	inter
CUST_18112_PI429285431	0.8963475	A	2.2187707	A	0.399862751266744	0	lncRNA	19846-2_{3001..5320}	lnc-ARRDC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARRDC3-1:1	chr5	 90612897	 90615216	-	lnc-ARRDC3-1	lnc-ARRDC3-1:1	XLOC_004924	linc-LYSMD3-2	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80"	NA	inter
CUST_42074_PI429285431	5.4476748	P	4.770892	P	1.59857097522134	0	lncRNA	43993-1_{1..104}	ENST00000583472 ncrna:miRNA chromosome:GRCh37:16:56279432:56279535:1 gene:ENSG00000265281 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583472 ncrna:miRNA chromosome:GRCh37:16:56279432:56279535:1 gene:ENSG00000265281 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 56279432	 56279535	+	ENSG00000265281	ENST00000583472	NA	NA	GNAO1	NA	chr16:56269432-56289535	inner
CUST_38547_PI429285431	0.9027929	A	0.9243179	A	0.985190758546367	0	lncRNA	39554-1_{1..935}	n383270|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002kov.1||1.0988400|-0.4976611	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383270|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002kov.1||1.0988400|-0.4976611	chr18	 10794067	 10795001	-	NA	NA	NA	NA	FAM38B	NA	chr18:10784067-10805002	inner
LNCA_21_P0013609	3.4194906	P	4.088658	P	0.628869512170171	0	lncRNA	TCONS_l2_00029138	NA	NA	NA	NA	XLOC_l2_015075	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015075), lincRNA [TCONS_l2_00029138]"	chr9:139447115-139447174	hs|9q34.3	Agilent_HUMAN_G3V2	TCONS_l2_00029138	TCONS_l2_00029138	chr9	139447115	139447174	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002682	0.90268016	A	0.92420596	A	0.985190212240761	0	lncRNA	TCONS_00005270	NA	NA	NA	NA	XLOC_002384	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002384), lincRNA [TCONS_00005270]"	chr2:169284085-169284026	hs|2q24.3	Agilent_HUMAN_G3V2	TCONS_00005270	TCONS_00005270	chr2	169284026	169284085	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25949_PI429285431	2.2410407	A	1.9780321	A	1.19997853550285	0	lncRNA	27469-1_{1..472}	lnc-NEURL1B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NEURL1B-2:1	chr5	172189218	172189689	+	lnc-NEURL1B-2	lnc-NEURL1B-2:1	ENSG00000253295.1	RP11-779O18.1	DUSP1	"hg19_refFlat_FAM58A:range=chrX:152853823-1528645295'pad=0,hg19_refFlat_FAM58A:range=chrX:152853823-1528645295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM58BP:range=chr1:200182692-2001834505'pad=0,hg19_refFlat_FAM58BP:range=chr1:200182692-2001834505'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90chr5:172195093-172198203"	NA	inter
CUST_49521_PI429285431	14.05926	P	13.292832	P	1.70105289152659	0	lncRNA	53313-1_{1..266}	hg19_lincRNAsTranscripts_TCONS_l2_00024711 range=chr6:31349688-31350115 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024711 range=chr6:31349688-31350115 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 31349688	 31349953	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19648_PI429285431	0.88768	A	0.9009287	A	0.990858738659607	0	lncRNA	21304-1_{1..428}	lnc-LOX-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LOX-1:1	chr5	121491628	121492055	-	lnc-LOX-1	lnc-LOX-1:1	ENSG00000249610.1	CTC-441N14.1	LOC100505841	NA	chr5:121495871-121501710	inter
CUST_24871_PI429285431	2.8967903	A	3.0148907	A	0.921400061915612	0	lncRNA	26412-1_{1..548}	lnc-HIATL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HIATL2-1:1	chr9	 99711837	 99712384	-	lnc-HIATL2-1	lnc-HIATL2-1:1	ENSG00000249044.1	RP11-330M2.7	FAM22G	NA	chr9:99701837-99704572	inter
LNCA_21_P0008957	4.6858573	P	4.8435197	P	0.896476456333488	0	lncRNA	TCONS_00024435	NA	NA	NA	NA	XLOC_011752	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011752), lincRNA [TCONS_00024435]"	chr16:64294812-64295077	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024435	TCONS_00024435	chr16	 64294812	 64295077	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002897	0.89136183	A	1.5998759	A	0.611950103509049	0	lncRNA	ENST00000488999	NA	NA	NA	NA	XLOC_003305	NA	ENST00000488999	NA	NA	"BROAD Institute lincRNA (XLOC_003305), lincRNA [TCONS_00005861]"	chr3:157734067-157734008	hs|3q25.32	Agilent_HUMAN_G3V2	ENST00000488999	ENST00000488999	chr3	157734008	157734067	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20016_PI429285431	4.4650407	P	4.4439006	P	1.01476108516406	0	lncRNA	21669-1_{1..1575}	lnc-U47924.19.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-U47924.19.1-1:2	chr12	  7084858	  7086432	+	lnc-U47924.19.1-1	lnc-U47924.19.1-1:2	ENSG00000126749.7	EMG1	PHB2	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.46;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80chr12:7074858-7079916"	NA	inner
CUST_25626_PI429285431	0.89712536	A	0.9053801	A	0.99429458827732	0	lncRNA	27156-1_{1..357}	lnc-PKP4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PKP4-2:1	chr2	158990223	158990579	+	lnc-PKP4-2	lnc-PKP4-2:1	ENSG00000237327.1	UPP2-IT1	UPP2	NA	chr2:158980223-158992666	inner
CUST_42907_PI429285431	4.5219197	P	4.525997	P	0.997177820856755	0	lncRNA	46005-1_{1..68}	ENST00000517258 ncrna:snoRNA chromosome:GRCh37:5:131415759:131415826:1 gene:ENSG00000253067 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517258 ncrna:snoRNA chromosome:GRCh37:5:131415759:131415826:1 gene:ENSG00000253067 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	131415759	131415826	+	ENSG00000253067	ENST00000517258	NA	NA	CSF2	NA	chr5:131409485-131411859	inter
LNCA_21_P0014332	2.6354835	A	2.8843527	A	0.841555777346211	0	lncRNA	XR_109325	XR_109325	XR_109325	NA	Hs.676338	LOC100506307	uncharacterized LOC100506307	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506307 (LOC100506307), miscRNA [XR_109325]"	chr16:78291527-78291586	hs|16q23.1	Agilent_HUMAN_G3V2	XR_109325	XR_109325	chr16	 78291527	 78291586	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20226_PI429285431	2.8748262	A	3.9571114	P	0.472280148296638	0	lncRNA	21870-1_{1..476}	lnc-AC012652.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AC012652.1.1-3:1	chr15	 41636319	 41636794	+	lnc-AC012652.1.1-3	lnc-AC012652.1.1-3:1	ENSG00000259396.1	RP11-16O9.2	NUSAP1	NA	chr15:41626319-41646423	inner
LNCA_21_P0001555	2.9448187	P	3.1189091	P	0.886326159809945	0	lncRNA	TCONS_00001604	NA	NA	NA	NA	XLOC_000934	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000934), lincRNA [TCONS_00001604]"	chr1:99891652-99891593	hs|1p21.2	Agilent_HUMAN_G3V2	TCONS_00001604	TCONS_00001604	chr1	 99891593	 99891652	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005481	0.88134295	A	0.89243543	A	0.992340761370143	0	lncRNA	TCONS_00013743	NA	NA	NA	NA	XLOC_006385	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006385), lincRNA [TCONS_00013743]"	chr7:26168012-26167953	hs|7p15.2	Agilent_HUMAN_G3V2	TCONS_00013743	TCONS_00013743	chr7	 26167953	 26168012	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44412_PI429285431	0.8973772	A	1.3748721	A	0.71822366761047	0	lncRNA	49026-1_{1..2155}	"gi|226442712|ref|NR_027474.1| Homo sapiens alanine-glyoxylate aminotransferase 2-like 1 (AGXT2L1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226442712|ref|NR_027474.1| Homo sapiens alanine-glyoxylate aminotransferase 2-like 1 (AGXT2L1), transcript variant 4, non-coding RNA"	Chr4	109663196	109665350	-	64850	NR_027474.1	NA	NA	NA	NA	NA	inter
CUST_15321_PI429285431	4.7930193	P	3.690941	P	2.14663707497005	0	lncRNA	17000-1_{1..1025}	lnc-RP11-150O12.6.1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-150O12.6.1-1:6	chr8	 37350956	 37351980	-	lnc-RP11-150O12.6.1-1	lnc-RP11-150O12.6.1-1:6	XLOC_007053	linc-DUSP26-5	NA	NA	NA	inter
CUST_15907_PI429285431	0.9021704	A	0.9134036	A	0.992243973498918	0	lncRNA	17601-1_{1..1899}	lnc-AUTS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AUTS2-1:1	chr7	 69061156	 69063054	+	lnc-AUTS2-1	lnc-AUTS2-1:1	XLOC_006142	linc-AUTS2-1	AUTS2	NA	chr7:69063905-69073004	inter
CUST_9805_PI429285431	1.5660534	A	1.1648986	A	1.32056452890914	0	lncRNA	11321-1_{1..500}	lnc-TMED7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMED7-1:1	chr5	115008923	115009422	-	lnc-TMED7-1	lnc-TMED7-1:1	XLOC_004959	linc-TMED7	NA	NA	NA	inter
CUST_4075_PI429285431	9.122131	P	9.336044	P	0.862195537121211	0	lncRNA	4036-1_{1..602}	"transcript_id ""ENST00000534218.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534218.1"" | genecode_v17"	chr11	111639581	111640182	-	ENSG00000254990.1	ENST00000534218.1	RP11-108O10.2	RP11-108O10.2-001	ALG9	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70chr11:111652919-111659074"	NA	inter
CUST_10308_PI429285431	1.7427183	A	1.1874369	A	1.46945522494448	0	lncRNA	11836-1_{1..3000}	lnc-MTHFSD-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-MTHFSD-2:1	chr16	 86542261	 86545260	-	lnc-MTHFSD-2	lnc-MTHFSD-2:1	XLOC_012046	linc-COX4NB-9	FOXF1	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10chr16:86544133-86548070"	NA	inter
CUST_9451_PI429285431	0.8932396	A	0.90647435	A	0.990868319718556	0	lncRNA	10956-1_{1..858}	lnc-EMX2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EMX2-2:2	chr10	119512547	119513404	+	lnc-EMX2-2	lnc-EMX2-2:2	XLOC_008633	linc-NANOS1-5	NA	NA	NA	inter
CUST_9342_PI429285431	1.0303875	A	0.88776475	A	1.1039101482038	0	lncRNA	10848-1_{1..1207}	lnc-DRD5-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DRD5-6:1	chr4	 10750796	 10752002	+	lnc-DRD5-6	lnc-DRD5-6:1	XLOC_003453	linc-CPEB2-13	NA	NA	NA	inter
CUST_6746_PI429285431	3.8045657	P	3.6625242	P	1.1034654814409	0	lncRNA	6694-1_{1..500}	"transcript_id ""ENST00000420710.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420710.1"" | genecode_v17"	chr20	 59652280	 59652779	-	ENSG00000229755.1	ENST00000420710.1	RP5-827L5.2	RP5-827L5.2-001	NA	NA	NA	inter
CUST_47552_PI429285431	0.8949571	A	0.885186	A	1.00679579776345	0	lncRNA	51560-1_{1..2915}	"gi|291045139|ref|NR_033380.1| Homo sapiens CD99 molecule pseudogene 1 (CD99P1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|291045139|ref|NR_033380.1| Homo sapiens CD99 molecule pseudogene 1 (CD99P1), transcript variant 1, non-coding RNA"	ChrY	  2477306	  2480220	+	401577	NR_033380.1	NA	NA	NA	NA	NA	inter
CUST_10499_PI429285431	3.2159197	P	3.2511	P	0.975909789378576	0	lncRNA	12026-2_{3001..5199}	lnc-KDM4C-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KDM4C-7:1	chr9	  7963826	  7966024	+	lnc-KDM4C-7	lnc-KDM4C-7:1	XLOC_007279	linc-TYRP1-4	NA	NA	NA	inter
CUST_9774_PI429285431	6.489585	P	6.3854613	P	1.07484132827896	0	lncRNA	11291-1_{1..212}	lnc-PRKAR1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRKAR1A-1:1	chr17	 66638811	 66639022	+	lnc-PRKAR1A-1	lnc-PRKAR1A-1:1	XLOC_012291	linc-MAP2K6-2	NA	NA	NA	inter
LNCA_21_P0007777	3.4551075	P	2.811799	A	1.56190694129224	0	lncRNA	TCONS_00020966	NA	NA	NA	NA	XLOC_010235	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010235), lincRNA [TCONS_00020966]"	chr12:124742490-124742431	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00020966	TCONS_00020966	chr12	124742431	124742490	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9513_PI429285431	2.137374	A	2.534573	A	0.759331098369477	0	lncRNA	11022-1_{1..837}	lnc-SERPINB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERPINB1-1:1	chr6	  2821889	  2822725	-	lnc-SERPINB1-1	lnc-SERPINB1-1:1	XLOC_005579	linc-MYLK4	NA	NA	NA	inter
CUST_23722_PI429285431	0.8849359	A	0.9082992	A	0.983936215651194	0	lncRNA	25286-1_{1..754}	lnc-KALRN-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KALRN-2:2	chr3	123411086	123411839	+	lnc-KALRN-2	lnc-KALRN-2:2	ENSG00000250174.1	MYLK-AS2	MYLK	NA	chr3:123401086-123421254	inner
LNCA_21_P0003462	0.8755146	A	1.0897266	A	0.862016864743577	0	lncRNA	ENST00000508563	NA	NA	NA	NA	XLOC_003940	NA	ENST00000508563	THC2697405	NA	"BROAD Institute lincRNA (XLOC_003940), lincRNA [TCONS_00007756]"	chr4:43459629-43459570	hs|4p13	Agilent_HUMAN_G3V2	ENST00000508563	ENST00000508563	chr4	 43459570	 43459629	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51375_PI429285431	8.685241	P	8.307202	P	1.29957419303192	0	lncRNA	54970-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00009366 range=chr15:100326887-100347024 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009366 range=chr15:100326887-100347024 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	100329887	100332886	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0,hg19_refFlat_GOLGA6C:range=chr15:75550940-755625405'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:82635130-826416065'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0,hg19_refFlat_GOLGA6D:range=chr15:75575217-755868165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_GOLGA8B:range=chr15:34819833-348281135'pad=0,hg19_refFlat_GOLGA8B:range=chr15:34819833-348281135'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:83098810-831051365'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0,hg19_refFlat_GOLGA6L4:range=chr15:84904587-849113445'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0,hg19_refFlat_GOLGA6A:range=chr15:74363251-743748505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-59.20;hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0,hg19_refFlat_GOLGA6L10:range=chr15:83011415-830180985'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00;hg19_refFlat_GOLGA8A:range=chr15:34673612-346818925'pad=0,hg19_refFlat_GOLGA8A:range=chr15:34673612-346818925'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0,hg19_refFlat_GOLGA6B:range=chr15:72947079-729586835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0,hg19_refFlat_GOLGA6L9:range=chr15:82722285-827286115'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_GOLGA2:range=chr9:131019346-1310382555'pad=0,hg19_refFlat_GOLGA2:range=chr9:131019346-1310382555'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90"	NA	inter
LNCA_21_P0008061	0.8757292	A	0.87647873	A	0.99948060032849	0	lncRNA	TCONS_00021781	NA	NA	NA	NA	XLOC_010379	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010379), lincRNA [TCONS_00021781]"	chr13:46295698-46295757	hs|13q14.13	Agilent_HUMAN_G3V2	TCONS_00021781	TCONS_00021781	chr13	 46295698	 46295757	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005757	0.8758496	A	0.8766255	A	0.999462331698037	0	lncRNA	TCONS_00014845	NA	NA	NA	NA	XLOC_006911	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006911), lincRNA [TCONS_00014845]"	chr8:122891940-122891999	hs|8q24.13	Agilent_HUMAN_G3V2	TCONS_00014845	TCONS_00014845	chr8	122891940	122891999	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44211_PI429285431	3.32149	P	2.1258388	A	2.29048195979174	0	lncRNA	48864-2_{3001..4706}	"gi|239937473|ref|NR_027794.1| Homo sapiens chromosome 3 open reading frame 17 (C3orf17), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239937473|ref|NR_027794.1| Homo sapiens chromosome 3 open reading frame 17 (C3orf17), transcript variant 2, non-coding RNA"	Chr3	112724291	112725996	-	25871	NR_027794.1	NA	NA	NA	NA	NA	inter
CUST_35445_PI429285431	1.3207223	A	1.054725	A	1.20246699848223	0	lncRNA	36852-1_{1..2591}	n342512|AK095739|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5007|NULL|-0.3675210|-0.3584245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342512|AK095739|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5007|NULL|-0.3675210|-0.3584245	chr3	112244394	112246984	-	NA	NA	NA	NA	ATG3	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00chr3:112243033-112256989"	NA	inter
LNCA_21_P0005407	6.7007194	P	7.3509393	P	0.637183184843479	0	lncRNA	AL390145	NA	AL390145	NA	Hs.512643	XLOC_006187	NA	NA	THC2711410	NA	"BROAD Institute lincRNA (XLOC_006187), lincRNA [TCONS_00013551]"	chr7:99518980-99519039	hs|7q22.1	Agilent_HUMAN_G3V2	AL390145	AL390145	chr7	 99518980	 99519039	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26670_PI429285431	4.739225	P	2.988865	A	3.36442509131358	0	lncRNA	28167-4_{9001..9768}	lnc-CEMP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CEMP1-1:1	chr16	  2624357	  2625124	-	lnc-CEMP1-1	lnc-CEMP1-1:1	ENSG00000261613.1	RP11-20I23.8	PDPK1	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-59.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_PDPK1:range=chr16:2588114-26476735'pad=0,hg19_refFlat_PDPK1:range=chr16:2588114-26476735'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.80;hg19_refFlat_PDPK1:range=chr16:2588114-26477685'pad=0,hg19_refFlat_PDPK1:range=chr16:2588114-26477685'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.11;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80chr16:2605357-2626295"	NA	inner
CUST_16889_PI429285431	2.9079983	A	3.1082065	A	0.870424940385889	0	lncRNA	18598-1_{1..336}	lnc-SLC9A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC9A1-1:1	chr1	 27560753	 27561088	-	lnc-SLC9A1-1	lnc-SLC9A1-1:1	XLOC_000754	linc-SLC9A1-1	WDTC1	NA	chr1:27550753-27570974	inter
LNCA_21_P0004338	1.5336001	A	3.4065685	P	0.273011116256505	0	lncRNA	TCONS_00010176	NA	NA	NA	NA	XLOC_004638	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004638), lincRNA [TCONS_00010176]"	chr5:172724611-172724670	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00010176	TCONS_00010176	chr5	172724611	172724670	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2500_PI429285431	0.9144743	A	0.92207456	A	0.994745753306497	0	lncRNA	2492-1_{1..877}	"transcript_id ""ENST00000436804.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436804.1"" | genecode_v17"	chr6	 29465286	 29466162	+	ENSG00000229274.1	ENST00000436804.1	XXbac-BPG13B8.10	XXbac-BPG13B8.10-001	MAS1L	NA	chr6:29455286-29455679	inter
CUST_27891_PI429285431	0.91281164	A	0.9140581	A	0.999136392888777	0	lncRNA	29485-1_{1..444}	n325128|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331968|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331968|-1.2823400|-0.5048146	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325128|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331968|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331968|-1.2823400|-0.5048146	chr2	140577621	140578064	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35006_PI429285431	5.81547	P	5.8974423	P	0.944765180481661	0	lncRNA	36420-1_{1..1483}	n341936|BC015493|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4417|NULL|-0.8336160|-0.2107075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341936|BC015493|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4417|NULL|-0.8336160|-0.2107075	chr12	 58017196	 58018678	-	NA	NA	NA	NA	SLC26A10	"hg19_refFlat_SLC26A10:range=chr12:58014004-580195285'pad=0,hg19_refFlat_SLC26A10:range=chr12:58014004-580195285'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.80chr12:58013693-58019934"	NA	inner
CUST_50281_PI429285431	1.2740059	A	0.91477823	A	1.28273901431908	0	lncRNA	54004-1_{1..500}	hg19_lincRNAsTranscripts_TCONS_l2_00028837 range=chr9:74956372-74960913 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028837 range=chr9:74956372-74960913 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 74956372	 74956871	+	NA	NA	NA	NA	ZFAND5	NA	chr9:74966341-74970913	inter
CUST_5495_PI429285431	0.89734536	A	0.91292703	A	0.989257724180901	0	lncRNA	5427-1_{1..426}	"transcript_id ""ENST00000570084.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000570084.1"" | genecode_v17"	chr16	 32676974	 32677399	+	ENSG00000260311.1	ENST00000570084.1	RP11-586K12.10	RP11-586K12.10-002	TP53TG3	NA	chr16:32684849-32687854	inter
CUST_15961_PI429285431	1.6198207	A	1.5204175	A	1.07133019344359	0	lncRNA	17658-1_{1..363}	lnc-ZBBX-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZBBX-3:1	chr3	166643394	166643756	-	lnc-ZBBX-3	lnc-ZBBX-3:1	XLOC_003318	linc-BCHE-2	NA	NA	NA	inter
CUST_9080_PI429285431	5.696284	P	5.2106385	P	1.40021221752034	0	lncRNA	10602-1_{1..3000}	lnc-EIF4E1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF4E1B-1:1	chr5	176056233	176059232	+	lnc-EIF4E1B-1	lnc-EIF4E1B-1:1	ENSG00000244826	ENST00000501116	EIF4E1B	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SNCB:range=chr5:176047812-1760566555'pad=0,hg19_refFlat_SNCB:range=chr5:176047812-1760566555'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-17.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50chr5:176057683-176066691"	NA	inter
CUST_44324_PI429285431	6.0328865	P	6.1073093	P	0.949722014057877	0	lncRNA	48956-1_{1..2237}	"gi|410170474|ref|XR_171094.1| PREDICTED: Homo sapiens uncharacterized LOC101060079 (LOC101060079), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170474|ref|XR_171094.1| PREDICTED: Homo sapiens uncharacterized LOC101060079 (LOC101060079), misc_RNA"	NA	NA	NA	NA	NA	XR_171094.1	NA	NA	NA	NA	NA	Unknown
CUST_8307_PI429285431	0.92473423	A	0.972582	A	0.967378399864695	0	lncRNA	9891-1_{1..1840}	lnc-ATP1B3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATP1B3-3:1	chr3	141730882	141732721	+	lnc-ATP1B3-3	lnc-ATP1B3-3:1	ENSG00000246920	ENST00000453700	TFDP2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50chr3:141720882-141741018"	NA	inner
CUST_30132_PI429285431	4.5700803	P	4.397423	P	1.12713263952152	0	lncRNA	31906-1_{1..301}	n334778|AJ227866|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245015|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245015|-1.2438800|-0.2328595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334778|AJ227866|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245015|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245015|-1.2438800|-0.2328595	chr1	154235976	154236276	+	NA	NA	NA	NA	UBAP2L	NA	chr1:154225976-154243329	inner
CUST_39114_PI429285431	0.9041022	A	0.92648625	A	0.984604303214558	0	lncRNA	40091-1_{1..1390}	n385682|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bjy.2||1.1052900|-0.2330625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385682|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bjy.2||1.1052900|-0.2330625	chr9	119600739	119602128	+	NA	NA	NA	NA	ASTN2	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00chr9:119590739-119615400"	NA	inner
LNCA_33_P3422260	6.563568	P	6.684887	P	0.919346743285559	0	lncRNA	XR_132809	XR_132809	XR_132809	   729305	Hs.148365	LOC729305	uncharacterized LOC729305	ENST00000513405	THC2678881	NA	"PREDICTED: Homo sapiens hypothetical LOC729305 (LOC729305), miscRNA [XR_132809]"	chr11:134605845-134605904	hs|11q25	Agilent_HUMAN_G3V2	XR_132809	XR_132809	chr11	134605845	134605904	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3384835	6.0701385	P	5.6001244	P	1.38512300537166	0	lncRNA	XR_110561	XR_110561	XR_110561	100505719	Hs.718838	LOC100505719	uncharacterized LOC100505719	ENST00000508517	THC2775681	NA	"PREDICTED: Homo sapiens hypothetical LOC100505719, transcript variant 3 (LOC100505719), miscRNA [XR_110561]"	chr5:114955830-114955889	hs|5q22.3	Agilent_HUMAN_G3V2	XR_110561	XR_110561	chr5	114955830	114955889	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2072_PI429285431	3.940241	P	3.9362977	P	1.00273702611243	0	lncRNA	2063-1_{1..577}	"transcript_id ""ENST00000500616.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000500616.2"" | genecode_v17"	chr5	  7373230	  7373806	+	ENSG00000223597.2	ENST00000500616.2	CTD-2296D1.5	CTD-2296D1.5-001	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70"	NA	inter
CUST_6345_PI429285431	2.3081703	A	2.5831819	A	0.826443673101115	0	lncRNA	6269-1_{1..523}	"transcript_id ""ENST00000588438.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588438.1"" | genecode_v17"	chr19	 14436164	 14436686	-	ENSG00000266913.1	ENST00000588438.1	CTC-548K16.2	CTC-548K16.2-001	NA	NA	NA	inter
LNCA_21_P0004161	7.686027	P	6.756429	P	1.90474517409948	0	lncRNA	ENST00000511592	NA	NA	NA	NA	XLOC_004939	NA	ENST00000511592	NA	NA	"BROAD Institute lincRNA (XLOC_004939), lincRNA [TCONS_00009736]"	chr5:99989951-99989892	hs|5q21.1	Agilent_HUMAN_G3V2	ENST00000511592	ENST00000511592	chr5	 99989892	 99989951	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30319_PI429285431	2.4851665	A	2.5445285	A	0.959688426496767	0	lncRNA	32095-1_{1..655}	n335230|AY540015|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255310|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255310|2.1606700|-0.3684555	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335230|AY540015|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255310|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255310|2.1606700|-0.3684555	chrX	 10443202	 10443856	-	NA	NA	NA	NA	MID1	NA	chrX:10433202-10545202	inner
CUST_24300_PI429285431	1.9261057	A	2.1346726	A	0.865396445375264	0	lncRNA	25851-1_{1..628}	lnc-TMEM232-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM232-3:1	chr5	110427768	110428395	-	lnc-TMEM232-3	lnc-TMEM232-3:1	ENSG00000253613.1	CTC-551A13.2	WDR36	NA	chr5:110427870-110437813	inter
CUST_28448_PI429285431	0.91113114	A	0.9271875	A	0.988932282220177	0	lncRNA	30108-1_{1..469}	n325774|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044353|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044353|-0.9221150|-0.2272746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325774|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044353|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044353|-0.9221150|-0.2272746	chr13	 29835312	 29835780	-	NA	NA	NA	NA	MTUS2	NA	chr13:29825312-29855169	inner
CUST_49396_PI429285431	0.89537203	A	1.8987875	A	0.498817688367927	0	lncRNA	53207-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00022617 range=chr5:171212596-171222385 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022617 range=chr5:171212596-171222385 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	171212596	171215595	+	NA	NA	NA	NA	C5orf50	"hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0,hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30chr5:171202596-171232385"	NA	inter
LNCA_21_P0008471	0.88343084	A	0.89578706	A	0.991471893323576	0	lncRNA	TCONS_00022822	NA	NA	NA	NA	XLOC_011094	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011094), lincRNA [TCONS_00022822]"	chr14:87515919-87515860	hs|14q31.3	Agilent_HUMAN_G3V2	TCONS_00022822	TCONS_00022822	chr14	 87515860	 87515919	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7828_PI429285431	11.837432	P	12.010832	P	0.886750411646569	0	lncRNA	9452-1_{1..421}	lnc-C1orf31-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf31-6:3	chr1	234816557	234816977	+	lnc-C1orf31-6	lnc-C1orf31-6:3	ENSG00000228044	XLOC_000624	NA	NA	NA	inter
CUST_21146_PI429285431	2.3720706	A	1.7378803	A	1.55206642177933	0	lncRNA	22770-2_{3001..6000}	lnc-GJA10-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GJA10-3:4	chr6	 90584008	 90587007	+	lnc-GJA10-3	lnc-GJA10-3:4	ENSG00000118412.8	CASP8AP2	CASP8AP2	NA	chr6:90571008-90584155	inner
CUST_27815_PI429285431	0.9146553	A	0.9148708	A	0.999850637938213	0	lncRNA	29401-1_{1..509}	n325043|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078271|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078271|-0.0658620|-0.5921173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325043|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078271|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078271|-0.0658620|-0.5921173	chr20	 21327530	 21328038	+	NA	NA	NA	NA	XRN2	NA	chr20:21317530-21339015	inner
CUST_17100_PI429285431	4.5712366	P	4.4430466	P	1.09292166518181	0	lncRNA	18809-1_{1..394}	lnc-CTDSPL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTDSPL2-1:1	chr15	 44718492	 44718885	+	lnc-CTDSPL2-1	lnc-CTDSPL2-1:1	XLOC_011235	linc-CTDSPL2	CTDSPL2	NA	chr15:44719579-44728499	inter
CUST_44191_PI429285431	0.9012701	A	0.9120857	A	0.992531228287694	0	lncRNA	48848-1_{1..605}	"gi|387912549|ref|NR_046575.1| Homo sapiens MAGI1 antisense RNA 1 (MAGI1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|387912549|ref|NR_046575.1| Homo sapiens MAGI1 antisense RNA 1 (MAGI1-AS1), non-coding RNA"	Chr3	 65879491	 65880095	+	100873983	NR_046575.1	NA	NA	NA	NA	NA	inter
CUST_25532_PI429285431	8.424837	P	8.161718	P	1.20007036551232	0	lncRNA	27062-1_{1..2105}	lnc-CBFA2T3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CBFA2T3-2:1	chr16	 89179583	 89181687	-	lnc-CBFA2T3-2	lnc-CBFA2T3-2:1	ENSG00000261546.1	CTD-2555A7.3	ACSF3	"hg19_refFlat_ACSF3:range=chr16:89167090-892206155'pad=0,hg19_refFlat_ACSF3:range=chr16:89167090-892206155'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.60chr16:89169583-89191687"	NA	inner
CUST_38711_PI429285431	1.1769226	A	0.894931	A	1.21587220382401	0	lncRNA	39705-1_{1..2063}	n384142|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003anf.1||-1.1463000|-0.2247793	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n384142|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003anf.1||-1.1463000|-0.2247793	chr22	 34120999	 34123061	+	NA	NA	NA	NA	LARGE	NA	chr22:34110999-34143769	inner
CUST_17504_PI429285431	0.8831498	A	0.8798465	A	1.00229229638474	0	lncRNA	19229-1_{1..844}	lnc-C4orf34-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C4orf34-1:1	chr4	 39545444	 39546287	-	lnc-C4orf34-1	lnc-C4orf34-1:1	XLOC_003932	linc-UGDH	C4orf34	NA	chr4:39552550-39555555	inter
LNCA_21_P0002187	4.5657377	P	4.9781017	P	0.75139113494331	0	lncRNA	TCONS_00003611	NA	NA	NA	NA	XLOC_001406	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001406), lincRNA [TCONS_00003611]"	chr2:27977616-27977675	hs|2p23.2	Agilent_HUMAN_G3V2	TCONS_00003611	TCONS_00003611	chr2	 27977616	 27977675	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29961_PI429285431	1.4512485	A	0.92571366	A	1.43946712444381	0	lncRNA	31727-1_{1..417}	n334167|M97725|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196988|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196988|1.9347200|-0.1514905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334167|M97725|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196988|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196988|1.9347200|-0.1514905	chr7	142326571	142326987	+	NA	NA	NA	NA	PRSS1	NA	chr7:142457319-142460927	inner
CUST_33263_PI429285431	2.1939425	A	2.8641322	A	0.628424050337025	0	lncRNA	34849-1_{1..457}	n339971|BC033335|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2424|NULL|-1.1067900|-0.2094100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339971|BC033335|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2424|NULL|-1.1067900|-0.2094100	chr4	 42659512	 42659968	+	NA	NA	NA	NA	ATP8A1	NA	chr4:42649512-42659122	inter
CUST_43967_PI429285431	5.7929296	P	5.3571935	P	1.35260078859915	0	lncRNA	48672-1_{1..3000}	"gi|388556554|ref|NR_049792.1| Homo sapiens pleckstrin homology domain containing, family B (evectins) member 2 (PLEKHB2), transcript variant 14, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388556554|ref|NR_049792.1| Homo sapiens pleckstrin homology domain containing, family B (evectins) member 2 (PLEKHB2), transcript variant 14, non-coding RNA"	Chr2	131862420	131865419	+	55041	NR_049792.1	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.04"	NA	inter
CUST_31774_PI429285431	2.5119834	A	2.7846816	A	0.827769960671221	0	lncRNA	33515-1_{1..2447}	n338317|BC041486|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|711|NULL|1.1060200|-0.2803661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>n338317|BC041486|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|711|NULL|1.1060200|-0.2803661	chr14	 57279900	 57282346	+	NA	NA	NA	NA	OTX2	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80chr14:57269900-57277184"	NA	inter
CUST_41826_PI429285431	1.0551474	A	0.87969524	A	1.12931829286538	0	lncRNA	43426-1_{1..78}	ENST00000578233 ncrna:miRNA chromosome:GRCh37:19:21238809:21238886:1 gene:ENSG00000265650 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578233 ncrna:miRNA chromosome:GRCh37:19:21238809:21238886:1 gene:ENSG00000265650 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 21238809	 21238886	+	ENSG00000265650	ENST00000578233	NA	NA	ZNF430	NA	chr19:21228809-21242852	inner
CUST_19301_PI429285431	0.8969746	A	1.0883629	A	0.875762572678982	0	lncRNA	20968-1_{1..602}	lnc-RTN4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RTN4-3:1	chr2	 54889693	 54890294	-	lnc-RTN4-3	lnc-RTN4-3:1	ENSG00000238018.1	AC093110.3	SPTBN1	NA	chr2:54879693-54898583	inner
CUST_44660_PI429285431	2.9789884	P	3.6598349	P	0.623799153466127	0	lncRNA	49222-1_{1..1143}	"gi|310119688|ref|XR_108704.1| PREDICTED: Homo sapiens KU-MEL-3 (KU-MEL-3), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310119688|ref|XR_108704.1| PREDICTED: Homo sapiens KU-MEL-3 (KU-MEL-3), misc_RNA"	NA	NA	NA	NA	NA	XR_108704.1	NA	NA	NA	NA	NA	Unknown
CUST_38172_PI429285431	0.8961233	A	0.9050161	A	0.993854939345645	0	lncRNA	39243-1_{1..3000}	n381427|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001izx.2||4.3283300|-0.3861438	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381427|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001izx.2||4.3283300|-0.3861438	chr10	 42903623	 42906622	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9481_PI429285431	3.3937094	P	3.592403	P	0.871339227775819	0	lncRNA	10988-1_{1..856}	lnc-QPCT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-QPCT-1:1	chr2	 37553620	 37554475	+	lnc-QPCT-1	lnc-QPCT-1:1	XLOC_001428	linc-QPCT	PRKD3	NA	chr2:37543620-37544222	inter
CUST_34084_PI429285431	1.1063309	A	2.0187242	A	0.531302976387307	0	lncRNA	35613-1_{1..916}	n340909|BC039683|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3374|NULL|2.2002100|-0.2591688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340909|BC039683|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3374|NULL|2.2002100|-0.2591688	chr17	 77015297	 77016212	-	NA	NA	NA	NA	C1QTNF1	NA	chr17:77020251-77033683	inter
CUST_24352_PI429285431	6.124339	P	6.0503078	P	1.05265391935909	0	lncRNA	25904-1_{1..277}	lnc-CNN3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CNN3-2:1	chr1	 95492685	 95492961	-	lnc-CNN3-2	lnc-CNN3-2:1	ENSG00000250094.1	RP4-639F20.3	ALG14	NA	chr1:95482685-95502759	inner
CUST_39183_PI429285431	3.9207098	P	3.4194906	P	1.41540919823745	0	lncRNA	40158-1_{1..517}	n385925|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vjo.1||-1.1015100|-0.4027772	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385925|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vjo.1||-1.1015100|-0.4027772	chr1	   763063	   763579	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005654	0.8759674	A	1.7466971	A	0.546870179474227	0	lncRNA	TCONS_00014616	NA	NA	NA	NA	XLOC_006709	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006709), lincRNA [TCONS_00014616]"	chr8:10714039-10714576	hs|8p23.1	Agilent_HUMAN_G3V2	TCONS_00014616	TCONS_00014616	chr8	 10714039	 10714576	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16411_PI429285431	2.1751118	A	0.8966596	A	2.42578586009671	0	lncRNA	18107-2_{3001..3204}	lnc-PTBP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTBP1-1:1	chr19	   787815	   788018	+	lnc-PTBP1-1	lnc-PTBP1-1:1	XLOC_012908	linc-PTBP1	NA	"hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60"	NA	inter
CUST_30575_PI429285431	4.174482	P	4.725684	P	0.682451298335697	0	lncRNA	32357-1_{1..274}	n335789|X52222|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321739|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321739|-0.8202460|-0.2025808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335789|X52222|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321739|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321739|-0.8202460|-0.2025808	chr19	 45854721	 45854994	-	NA	NA	NA	NA	ERCC2	NA	chr19:45854649-45864995	inner
LNCA_21_P0014509	3.1875076	P	2.7974858	A	1.31041320484972	0	lncRNA	XR_110154	XR_110154	XR_110154	NA	Hs.624301	LOC100505838	uncharacterized LOC100505838	NA	THC2667953	NA	"PREDICTED: Homo sapiens hypothetical LOC100505838 (LOC100505838), miscRNA [XR_110154]"	chr18:72117384-72117443	hs|18q22.3	Agilent_HUMAN_G3V2	XR_110154	XR_110154	chr18	 72117384	 72117443	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37389_PI429285431	8.470331	P	8.098994	P	1.29355105796677	0	lncRNA	38493-1_{1..258}	n345841|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1390|NULL|-1.5117100|-0.3138916	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345841|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1390|NULL|-1.5117100|-0.3138916	chr20	  6195190	  6195447	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8293_PI429285431	0.8884975	A	0.9041191	A	0.989230344510791	0	lncRNA	9878-1_{1..454}	lnc-SOX2-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SOX2-1:8	chr3	181389295	181389748	+	lnc-SOX2-1	lnc-SOX2-1:8	ENSG00000242808	RP11-4B14.2	NA	NA	NA	inter
CUST_20820_PI429285431	0.90302134	A	0.89535105	A	1.00533079829803	0	lncRNA	22451-1_{1..552}	lnc-SLC25A47-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A47-1:1	chr14	100806589	100807140	+	lnc-SLC25A47-1	lnc-SLC25A47-1:1	ENSG00000258521.1	RP11-638I2.9	SLC25A47	NA	chr14:100796589-100796715	inner
CUST_48796_PI429285431	2.53934	A	0.90169024	A	3.11158522160972	0	lncRNA	52634-1_{1..202}	hg19_lincRNAsTranscripts_TCONS_l2_00014270 range=chr2:223184764-223186337 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014270 range=chr2:223184764-223186337 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	223184764	223184965	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32790_PI429285431	1.0703354	A	2.7122612	A	0.320428460739299	0	lncRNA	34425-1_{1..1943}	n339433|AF131782|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1865|NULL|-1.1479300|-0.3405810	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339433|AF131782|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1865|NULL|-1.1479300|-0.3405810	chr3	114341288	114343230	+	NA	NA	NA	NA	ZBTB20	NA	chr3:114331288-114353219	inner
CUST_14197_PI429285431	6.3829765	P	6.1585226	P	1.16833491774891	0	lncRNA	15849-1_{1..820}	lnc-HIVEP1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HIVEP1-2:2	chr6	 11961004	 11961823	+	lnc-HIVEP1-2	lnc-HIVEP1-2:2	XLOC_005173	linc-HIVEP1-2	NA	NA	NA	inter
CUST_43579_PI429285431	9.784275	P	8.4620695	P	2.50048075264794	0	lncRNA	48349-2_{3001..3785}	"gi|219803377|ref|NR_002212.3| Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1 (NUDT4P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219803377|ref|NR_002212.3| Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1 (NUDT4P1), non-coding RNA"	NW_003871055.3	  5567013	  5567797	+	440672	NR_002212.4	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70"	NA	Unknown
CUST_17415_PI429285431	3.5082834	P	3.787584	P	0.823990380395018	0	lncRNA	19140-1_{1..527}	lnc-OR2J2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR2J2-1:1	chr6	 29167955	 29168481	+	lnc-OR2J2-1	lnc-OR2J2-1:1	XLOC_005229	linc-OR14J1-2	NA	NA	NA	inter
CUST_49780_PI429285431	4.5856853	P	4.560535	P	1.01758569868041	0	lncRNA	53540-1_{1..373}	hg19_lincRNAsTranscripts_TCONS_l2_00026594 range=chr7:57269356-57271289 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026594 range=chr7:57269356-57271289 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 57269356	 57269728	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42661_PI429285431	1.9231695	A	1.2764461	A	1.56560839823348	0	lncRNA	45565-1_{1..68}	ENST00000516708 ncrna:snoRNA chromosome:GRCh37:2:195528831:195528898:-1 gene:ENSG00000252517 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516708 ncrna:snoRNA chromosome:GRCh37:2:195528831:195528898:-1 gene:ENSG00000252517 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	195528831	195528898	-	ENSG00000252517	ENST00000516708	NA	NA	NA	NA	NA	inter
CUST_31648_PI429285431	4.1502204	P	3.645936	A	1.41841962268203	0	lncRNA	33399-1_{1..1785}	n338170|AL512693|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|559|NULL|-1.2426200|-0.3300712	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338170|AL512693|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|559|NULL|-1.2426200|-0.3300712	chr15	101110102	101111886	+	NA	NA	NA	NA	ASB7	"hg19_refFlat_LINS:range=chr15:101109443-1011210475'pad=0,hg19_refFlat_LINS:range=chr15:101109443-1011210475'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30chr15:101142755-101152370"	NA	inner
LNCA_24_P115529	0.90470415	A	0.9273918	A	0.984397125392989	0	lncRNA	XR_108997	XR_108997	XR_108997	    51145	Hs.104671	LOC51145	erythrocyte transmembrane protein	NA	THC2666508	GO:0016021	"PREDICTED: Homo sapiens erythrocyte transmembrane protein (LOC51145), miscRNA [XR_108997]"	chr9:128508024-128507965	hs|9q33.3	Agilent_HUMAN_G3V2	XR_108997	XR_108997	chr9	128507965	128508024	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011052	11.072542	P	10.937811	P	1.09788808623076	0	lncRNA	TCONS_l2_00005785	NA	NA	NA	NA	XLOC_l2_003065	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003065), lincRNA [TCONS_l2_00005785]"	chr12:80423093-80423152	hs|12q21.31	Agilent_HUMAN_G3V2	TCONS_l2_00005785	TCONS_l2_00005785	chr12	 80423093	 80423152	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24691_PI429285431	1.5899067	A	0.9779412	A	1.52833997225144	0	lncRNA	26238-1_{1..218}	lnc-NFE2L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NFE2L2-1:1	chr2	178077225	178077442	-	lnc-NFE2L2-1	lnc-NFE2L2-1:1	ENSG00000229337.1	AC079305.8	HNRNPA3	NA	chr2:178077422-178087390	inter
LNCA_21_P0014864	3.1576407	P	2.49169	A	1.58661346745298	0	lncRNA	XR_132756	XR_132756	XR_132756	NA	NA	LOC100652761	uncharacterized LOC100652761	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652761 (LOC100652761), miscRNA [XR_132756]"	chr14:21731872-21731931	hs|14q11.2	Agilent_HUMAN_G3V2	XR_132756	XR_132756	chr14	 21731872	 21731931	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32980_PI429285431	1.9908315	A	1.0210438	A	1.95855236290718	0	lncRNA	34596-1_{1..1926}	n339657|AK098707|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2101|NULL|0.1116350|-0.1031740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339657|AK098707|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2101|NULL|0.1116350|-0.1031740	chr20	 33576777	 33578702	-	NA	NA	NA	NA	MYH7B	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MYH7B:range=chr20:33563298-335899915'pad=0,hg19_refFlat_MYH7B:range=chr20:33563298-335899915'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-9.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr20:33566777-33588801"	NA	inner
CUST_44198_PI429285431	0.9310502	A	0.8977915	A	1.02332095230606	0	lncRNA	48854-2_{3001..6000}	"gi|299782590|ref|NR_033860.1| Homo sapiens uncharacterized LOC440970 (LOC440970), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299782590|ref|NR_033860.1| Homo sapiens uncharacterized LOC440970 (LOC440970), non-coding RNA"	Chr3	 84690556	 84693555	-	440970	NR_033860.1	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70"	NA	inter
LNCA_21_P0005548	0.89816606	A	0.91727984	A	0.98683871451225	0	lncRNA	TCONS_00014020	NA	NA	NA	NA	XLOC_006664	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006664), lincRNA [TCONS_00014020]"	chr7:155062052-155061993	hs|7q36.2	Agilent_HUMAN_G3V2	TCONS_00014020	TCONS_00014020	chr7	155061993	155062052	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29578_PI429285431	3.912273	P	3.4751096	P	1.35393961790736	0	lncRNA	31338-1_{1..436}	n333079|AF279781|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076062|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076062|1.1983500|-0.3207069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333079|AF279781|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076062|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076062|1.1983500|-0.3207069	chr6	 44982535	 44982970	-	NA	NA	NA	NA	SUPT3H	NA	chr6:44972535-45154232	inner
CUST_22029_PI429285431	3.3870366	P	3.4663343	A	0.946518297113044	0	lncRNA	23637-1_{1..365}	lnc-PHF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHF2-1:1	chr9	 96322548	 96322912	+	lnc-PHF2-1	lnc-PHF2-1:1	ENSG00000234543.1	RP11-30L4.5	FAM120A	NA	chr9:96312548-96328397	inner
CUST_48843_PI429285431	2.6210604	A	2.4191298	A	1.15023656056365	0	lncRNA	52680-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00018698 range=chr3:94654310-94871125 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018698 range=chr3:94654310-94871125 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	 94654310	 94657309	+	NA	NA	NA	NA	NA	"hg19_refFlat_WDR82:range=chr3:52291506-523123775'pad=0,hg19_refFlat_WDR82:range=chr3:52291506-523123775'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40"	NA	inter
CUST_49304_PI429285431	4.403591	P	3.4831924	P	1.8926381353077	0	lncRNA	53122-1_{1..1816}	hg19_lincRNAsTranscripts_TCONS_l2_00022232 range=chr5:24170366-24172384 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022232 range=chr5:24170366-24172384 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 24170366	 24172181	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29329_PI429285431	12.564634	P	12.778498	P	0.862224821410393	0	lncRNA	31080-1_{1..278}	n332546|BC141913|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000435241|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000435241|0.1721040|-0.2770071	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332546|BC141913|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000435241|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000435241|0.1721040|-0.2770071	chr17	 79213105	 79213382	+	NA	NA	NA	NA	SLC38A10	NA	chr17:79218799-79224881	inner
CUST_37274_PI429285431	2.1928678	A	2.9809856	A	0.579099116138462	0	lncRNA	38383-1_{1..1054}	n345715|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1264|NULL|-1.3190800|-0.2694126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345715|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1264|NULL|-1.3190800|-0.2694126	chr1	244979094	244980147	+	NA	NA	NA	NA	NA	"hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70"	NA	inter
LNCA_21_P0008792	0.8878359	A	1.3475497	A	0.72713049157174	0	lncRNA	TCONS_00023815	NA	NA	NA	NA	XLOC_011595	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011595), lincRNA [TCONS_00023815]"	chr15:97725862-97725803	hs|15q26.2	Agilent_HUMAN_G3V2	TCONS_00023815	TCONS_00023815	chr15	 97725803	 97725862	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15858_PI429285431	3.521866	P	2.578885	A	1.92249653772276	0	lncRNA	17548-1_{1..602}	lnc-JPH4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JPH4-1:3	chr14	 24198787	 24199388	-	lnc-JPH4-1	lnc-JPH4-1:3	XLOC_010971	linc-JPH4-2	NA	NA	NA	inter
CUST_26888_PI429285431	8.857358	P	8.938568	P	0.945264513175376	0	lncRNA	28405-1_{1..583}	n323963|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054569|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054569|-1.1660100|-0.1158093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323963|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054569|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054569|-1.1660100|-0.1158093	chr9	131084557	131085139	+	NA	NA	NA	NA	TRUB2	"hg19_refFlat_TRUB2:range=chr9:131071829-1310846875'pad=0,hg19_refFlat_TRUB2:range=chr9:131071829-1310846875'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50chr9:131074557-131084697"	NA	inner
CUST_28564_PI429285431	4.658028	P	4.76564	P	0.928123053349562	0	lncRNA	30242-2_{3001..4272}	n325920|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049333|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049333|-1.0773100|-0.3200604	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325920|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049333|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049333|-1.0773100|-0.3200604	chr10	 91582246	 91583517	+	NA	NA	NA	NA	NA	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00"	NA	inter
CUST_29666_PI429285431	2.099482	A	2.0530727	A	1.03269147380741	0	lncRNA	31428-1_{1..313}	n333295|AY112901|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084455|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084455|-1.0967800|-0.1676536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333295|AY112901|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084455|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084455|-1.0967800|-0.1676536	chrX	 10535591	 10535903	-	NA	NA	NA	NA	MID1	NA	chrX:10525591-10598591	inner
CUST_37288_PI429285431	1.208472	A	0.8826262	A	1.25339904586072	0	lncRNA	38397-1_{1..748}	n345731|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1280|NULL|-1.5370900|-0.4047858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345731|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1280|NULL|-1.5370900|-0.4047858	chr3	118226982	118227729	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19577_PI429285431	0.90865946	A	0.9149763	A	0.995631071819432	0	lncRNA	21233-1_{1..706}	lnc-TRDMT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRDMT1-2:1	chr10	 17276701	 17277406	-	lnc-TRDMT1-2	lnc-TRDMT1-2:1	ENSG00000234961.1	RP11-124N14.3	VIM	"hg19_refFlat_VIM:range=chr10:17271422-172792705'pad=0,hg19_refFlat_VIM:range=chr10:17271422-172792705'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00chr10:17270258-17279592"	NA	inner
CUST_3967_PI429285431	1.4629309	A	0.8922126	A	1.48526288056752	0	lncRNA	3937-1_{1..522}	"transcript_id ""ENST00000444862.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444862.1"" | genecode_v17"	chr11	 64268325	 64268846	+	ENSG00000232500.1	ENST00000444862.1	AP005273.1	AP005273.1-001	NA	NA	NA	inter
LNCA_21_P0010015	3.398753	P	3.316331	P	1.05879405543205	0	lncRNA	TCONS_00028634	NA	NA	NA	NA	XLOC_013683	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013683), lincRNA [TCONS_00028634]"	chr20:22497643-22497584	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028634	TCONS_00028634	chr20	 22497584	 22497643	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19831_PI429285431	0.87425005	A	0.87621653	A	0.998637868476811	0	lncRNA	21488-1_{1..545}	lnc-MAP3K12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP3K12-1:1	chr12	 53864265	 53864809	-	lnc-MAP3K12-1	lnc-MAP3K12-1:1	ENSG00000258351.1	RP11-793H13.9	PCBP2	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70chr12:53854265-53874527"	NA	inner
CUST_26354_PI429285431	0.88583106	A	0.8981285	A	0.991512289875504	0	lncRNA	27861-1_{1..489}	lnc-IGSF11-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IGSF11-2:2	chr3	117409738	117410226	-	lnc-IGSF11-2	lnc-IGSF11-2:2	ENSG00000241213.1	RP11-768G7.2	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30"	NA	inter
CUST_47257_PI429285431	3.9466426	P	4.164102	P	0.860078710576691	0	lncRNA	51329-1_{1..867}	"gi|300796389|ref|NR_034152.1| Homo sapiens uncharacterized LOC149950 (LOC149950), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300796389|ref|NR_034152.1| Homo sapiens uncharacterized LOC149950 (LOC149950), non-coding RNA"	Chr20	 31175281	 31176147	+	149950	NR_034152.1	NA	NA	NA	NA	NA	inter
CUST_36887_PI429285431	1.9969752	A	2.1334784	A	0.909721465476874	0	lncRNA	38046-1_{1..1422}	n345359|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_908|NULL|-1.3531100|-0.3730342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345359|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_908|NULL|-1.3531100|-0.3730342	chr18	 45335335	 45336756	-	NA	NA	NA	NA	SMAD2	NA	chr18:45359466-45361353	inter
LNCA_21_P0009873	6.4959598	P	7.034944	P	0.688255338337581	0	lncRNA	XR_109592	XR_109592	XR_109592	NA	NA	LOC100505771	uncharacterized LOC100505771	ENST00000411579	THC2638819	NA	"PREDICTED: Homo sapiens hypothetical LOC100505771, transcript variant 2 (LOC100505771), miscRNA [XR_109592]"	chr20:62259802-62259861	hs|20q13.33	Agilent_HUMAN_G3V2	XR_109592	XR_109592	chr20	 62259802	 62259861	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34932_PI429285431	1.280076	A	0.8931284	A	1.30762385358298	0	lncRNA	36351-2_{3001..6000}	n341850|D87077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4330|NULL|11.4935000|-0.1806690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341850|D87077|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4330|NULL|11.4935000|-0.1806690	chr6	 42717695	 42720694	+	NA	NA	NA	NA	KIAA0240	NA	chr6:42788794-42836296	inner
LNCA_21_P0006938	0.8741492	A	0.87540156	A	0.999132306860547	0	lncRNA	TCONS_00018389	NA	NA	NA	NA	XLOC_008669	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008669), lincRNA [TCONS_00018389]"	chr10:132102582-132102641	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_00018389	TCONS_00018389	chr10	132102582	132102641	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7419_PI429285431	7.0675306	P	7.0083942	P	1.04184192558376	0	lncRNA	9062-1_{1..725}	lnc-KCNIP1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KCNIP1-1:3	chr5	169760138	169760862	+	lnc-KCNIP1-1	lnc-KCNIP1-1:3	ENSG00000235172	CTB-114C7.3	NA	NA	NA	inter
CUST_30551_PI429285431	8.658943	P	8.696011	P	0.974633691416423	0	lncRNA	32332-1_{1..251}	n335730|V01513|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000320845|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000320845|-1.2353600|-0.0987394	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335730|V01513|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000320845|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000320845|-1.2353600|-0.0987394	chr11	116703532	116703782	+	NA	NA	NA	NA	APOC3	NA	chr11:116700624-116703787	inner
CUST_49426_PI429285431	3.9767466	P	4.284298	P	0.80801198650532	0	lncRNA	53229-1_{1..771}	hg19_lincRNAsTranscripts_TCONS_l2_00022658 range=chr5:177366560-177384675 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022658 range=chr5:177366560-177384675 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	177366560	177367330	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12662_PI429285431	9.01146	P	9.129126	P	0.921677540135745	0	lncRNA	14278-1_{1..367}	lnc-THUMPD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THUMPD3-1:1	chr3	  9293692	  9294058	+	lnc-THUMPD3-1	lnc-THUMPD3-1:1	XLOC_002573	linc-THUMPD3	SRGAP3	NA	chr3:9283692-9291311	inter
CUST_10904_PI429285431	1.1074333	A	0.8747517	A	1.17501697583179	0	lncRNA	12448-1_{1..1954}	lnc-BCL2L11-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BCL2L11-3:2	chr2	112257371	112259324	+	lnc-BCL2L11-3	lnc-BCL2L11-3:2	XLOC_001625	linc-MERTK-2	NA	NA	NA	inter
CUST_51584_PI429285431	4.0202746	P	4.096262	P	0.948692600657649	0	lncRNA	55149-1_{1..2303}	hg19_lincRNAsTranscripts_TCONS_l2_00011137 range=chr17:20422629-20426334 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011137 range=chr17:20422629-20426334 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 20422629	 20424931	-	NA	NA	NA	NA	CDRT15L2	NA	chr17:20416807-20436334	inter
CUST_15439_PI429285431	0.88097084	A	0.8878078	A	0.995272191888139	0	lncRNA	17127-1_{1..430}	lnc-CTBP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTBP2-2:1	chr10	126619853	126620282	-	lnc-CTBP2-2	lnc-CTBP2-2:1	XLOC_008981	linc-METTL10	NA	NA	NA	inter
CUST_46808_PI429285431	1.7368418	A	0.9084997	A	1.77564367528349	0	lncRNA	50953-1_{1..898}	"gi|253314456|ref|NR_027998.1| Homo sapiens RAD52 motif 1 (RDM1), transcript variant 11, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|253314456|ref|NR_027998.1| Homo sapiens RAD52 motif 1 (RDM1), transcript variant 11, non-coding RNA"	Chr17	 34245084	 34245981	-	201299	NR_027998.1	NA	NA	NA	NA	NA	inter
CUST_50423_PI429285431	14.486966	P	14.236259	P	1.18979003478257	0	lncRNA	54127-1_{1..779}	hg19_lincRNAsTranscripts_TCONS_l2_00030166 range=chrX:26704160-26706126 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030166 range=chrX:26704160-26706126 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 26704160	 26704938	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7433_PI429285431	4.860858	P	4.7766895	P	1.06007658813029	0	lncRNA	9076-1_{1..2324}	lnc-METTL15-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-METTL15-4:4	chr11	 27698529	 27700852	+	lnc-METTL15-4	lnc-METTL15-4:4	ENSG00000245573	AC104563.1	BDNF	"hg19_refFlat_BDNF:range=chr11:27679368-276958315'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-276958315'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20;hg19_refFlat_BDNF:range=chr11:27679368-277225835'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277225835'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BDNF:range=chr11:27679368-277429615'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277429615'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BDNF:range=chr11:27679368-276801115'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-276801115'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BDNF:range=chr11:27679368-277209525'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277209525'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr11:27688529-27709354"	NA	inter
CUST_46678_PI429285431	7.572766	P	6.91143	P	1.58154652847647	0	lncRNA	50846-1_{1..3000}	"gi|224586819|ref|NR_027265.1| Homo sapiens golgi glycoprotein 1 (GLG1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224586819|ref|NR_027265.1| Homo sapiens golgi glycoprotein 1 (GLG1), transcript variant 5, non-coding RNA"	Chr16	 74481325	 74484324	-	2734	NR_027265.1	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50"	NA	inter
CUST_32398_PI429285431	0.8747815	A	0.8815551	A	0.995315903018384	0	lncRNA	34074-1_{1..1034}	n338989|CR615616|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1417|NULL|-0.3625360|-0.2851435	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338989|CR615616|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1417|NULL|-0.3625360|-0.2851435	chr2	161193682	161194715	-	NA	NA	NA	NA	RBMS1	"hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-29.62;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-22.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20chr2:161183682-161204716"	NA	inner
LNCA_21_P0008821	0.87208533	A	0.8764619	A	0.996970989580759	0	lncRNA	TCONS_00023909	NA	NA	NA	NA	XLOC_011201	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011201), lincRNA [TCONS_00023909]"	chr15:31509270-31509329	hs|15q13.3	Agilent_HUMAN_G3V2	TCONS_00023909	TCONS_00023909	chr15	 31509270	 31509329	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25581_PI429285431	3.6579807	P	2.9001167	A	1.69098516142417	0	lncRNA	27111-1_{1..562}	lnc-PRB1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-PRB1-1:3	chr12	 11639498	 11640059	-	lnc-PRB1-1	lnc-PRB1-1:3	ENSG00000255790.1	RP11-711K1.7	NA	NA	NA	inter
CUST_9498_PI429285431	2.5901377	A	0.8983403	A	3.23058940168235	0	lncRNA	11006-1_{1..1415}	lnc-STAT6-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STAT6-1:3	chr12	 57481597	 57483011	-	lnc-STAT6-1	lnc-STAT6-1:3	XLOC_010097	linc-TMEM194A	STAT6	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.91;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80chr12:57489187-57491617"	NA	inter
CUST_36957_PI429285431	3.1831632	A	3.0943139	A	1.06352157451976	0	lncRNA	38106-3_{6001..7264}	n345422|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_971|NULL|-1.3087300|-0.2114874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n345422|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_971|NULL|-1.3087300|-0.2114874	chr1	201489784	201491047	+	NA	NA	NA	NA	CSRP1	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50chr1:201473784-201476387"	NA	inter
CUST_9766_PI429285431	0.89805984	A	0.898672	A	0.999575773031666	0	lncRNA	11283-1_{1..2306}	lnc-MGAT1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MGAT1-2:2	chr5	180256937	180259242	-	lnc-MGAT1-2	lnc-MGAT1-2:2	XLOC_005110	linc-MGAT1-2	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10"	NA	inter
LNCA_21_P0008167	0.9062776	A	0.9302554	A	0.9835172081422	0	lncRNA	THC2660639	NA	NA	NA	NA	XLOC_010625	NA	NA	THC2660639	NA	"BROAD Institute lincRNA (XLOC_010625), lincRNA [TCONS_00022029]"	chr13:053705363-053705304	hs|13q14.3	Agilent_HUMAN_G3V2	THC2660639	THC2660639	chr13	 53705304	 53705363	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28684_PI429285431	2.2083457	A	2.3080044	A	0.93325374631956	0	lncRNA	30382-1_{1..677}	n326070|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046734|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046734|-0.8503090|-0.3710694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326070|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046734|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046734|-0.8503090|-0.3710694	chr10	  9052093	  9052769	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42133_PI429285431	0.91069645	A	1.4761002	A	0.675766271333537	0	lncRNA	44145-1_{1..79}	ENST00000401280 ncrna:miRNA chromosome:GRCh37:14:101514238:101514316:1 gene:ENSG00000216099 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401280 ncrna:miRNA chromosome:GRCh37:14:101514238:101514316:1 gene:ENSG00000216099 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101514238	101514316	+	ENSG00000216099	ENST00000401280	NA	NA	NA	NA	NA	inter
CUST_29890_PI429285431	8.945314	P	9.859497	P	0.530644290135086	0	lncRNA	31653-1_{1..653}	n333961|M13203|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194209|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194209|1.6313800|-0.1761541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333961|M13203|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194209|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194209|1.6313800|-0.1761541	chr11	 57373516	 57374168	+	NA	NA	NA	NA	SERPING1	NA	chr11:57365027-57382326	inner
CUST_1054_PI429285431	0.90805787	A	0.92756385	A	0.98657047657629	0	lncRNA	1044-1_{1..544}	"transcript_id ""ENST00000432984.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432984.1"" | genecode_v17"	chr2	121935903	121936446	+	ENSG00000236145.1	ENST00000432984.1	AC079988.3	AC079988.3-001	NA	"hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-19.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00"	NA	inter
LNCA_33_P3311845	4.64335	P	4.9361525	P	0.816314789195287	0	lncRNA	ENST00000429274	XR_132593	XR_132593	NA	Hs.370479	NA	NA	ENST00000429274	THC2484463	NA	"PREDICTED: Homo sapiens hypothetical FLJ38723 (FLJ38723), miscRNA [XR_132593]"	chr15:62535009-62534950	hs|15q22.2	Agilent_HUMAN_G3V2	ENST00000429274	ENST00000429274	chr15	 62534950	 62535009	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41706_PI429285431	0.89338154	A	1.3985841	A	0.70456144745608	0	lncRNA	43208-1_{1..113}	ENST00000583467 ncrna:miRNA chromosome:GRCh37:12:125400093:125400205:1 gene:ENSG00000265345 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583467 ncrna:miRNA chromosome:GRCh37:12:125400093:125400205:1 gene:ENSG00000265345 gene_biotype:miRNA transcript_biotype:miRNA	chr12	125400093	125400205	+	ENSG00000265345	ENST00000583467	NA	NA	UBC	NA	chr12:125396192-125399587	inter
LNCA_19_P00317562	0.89362437	A	0.91099787	A	0.988029826878712	0	lncRNA	ENST00000450294	NA	NA	NA	NA	XLOC_001512	NA	ENST00000450294	THC2685043	NA	"BROAD Institute lincRNA (XLOC_001512), lincRNA [TCONS_00002927]"	chr2:67516415-67516474	hs|2p14	Agilent_HUMAN_G3V2	ENST00000450294	ENST00000450294	chr2	 67516415	 67516474	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3045_PI429285431	0.89604646	A	0.907349	A	0.992196284596007	0	lncRNA	3024-1_{1..603}	"transcript_id ""ENST00000522570.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522570.1"" | genecode_v17"	chr8	 24849516	 24850118	+	ENSG00000253832.1	ENST00000522570.1	CTD-2168K21.1	CTD-2168K21.1-001	NA	NA	NA	inter
CUST_23518_PI429285431	7.887844	P	7.9357815	P	0.967318234575416	0	lncRNA	25085-1_{1..2045}	lnc-MED12L-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MED12L-1:2	chr3	150796676	150798720	+	lnc-MED12L-1	lnc-MED12L-1:2	ENSG00000239265.1	CLRN1-AS1	MED12L	NA	chr3:150804676-150807617	inter
CUST_15423_PI429285431	0.90568537	A	0.9179006	A	0.991568791454504	0	lncRNA	17109-1_{1..3000}	lnc-HAND2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HAND2-2:1	chr4	174440130	174443129	-	lnc-HAND2-2	lnc-HAND2-2:1	XLOC_004166	linc-SCRG1	HAND2	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40chr4:174447652-174451378"	NA	inter
LNCA_21_P0011561	5.314175	P	5.7152867	P	0.757274524036936	0	lncRNA	TCONS_l2_00011026	NA	NA	NA	NA	XLOC_l2_005933	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005933), lincRNA [TCONS_l2_00011026]"	chr17:81055145-81055204	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_l2_00011026	TCONS_l2_00011026	chr17	 81055145	 81055204	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15975_PI429285431	2.2141778	A	1.3571329	A	1.8113243377531	0	lncRNA	17673-1_{1..508}	lnc-TFAP2C-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TFAP2C-3:1	chr20	 55306089	 55306596	+	lnc-TFAP2C-3	lnc-TFAP2C-3:1	XLOC_013580	linc-SPO11-4	NA	NA	NA	inter
CUST_47418_PI429285431	6.2469883	P	5.134632	P	2.16198467991922	0	lncRNA	51458-2_{3001..4020}	"gi|237681082|ref|NR_027672.1| Homo sapiens adenosine deaminase, RNA-specific, B1 (ADARB1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237681082|ref|NR_027672.1| Homo sapiens adenosine deaminase, RNA-specific, B1 (ADARB1), transcript variant 5, non-coding RNA"	Chr21	 46497493	 46498512	+	104	NR_027672.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004191	1.2806488	A	0.8949826	A	1.30646293928674	0	lncRNA	ENST00000507236	NA	NA	NA	NA	XLOC_005093	NA	ENST00000507236	NA	NA	"BROAD Institute lincRNA (XLOC_005093), lincRNA [TCONS_00009815]"	chr5:176134416-176134357	hs|5q35.2	Agilent_HUMAN_G3V2	ENST00000507236	ENST00000507236	chr5	176134357	176134416	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32767_PI429285431	1.1741508	A	0.91597444	A	1.19596598683304	0	lncRNA	34403-1_{1..1361}	n339404|BC035252|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1836|NULL|-1.1316600|-0.4069880	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339404|BC035252|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1836|NULL|-1.1316600|-0.4069880	chr3	 86531092	 86532452	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014110	0.88201314	A	1.2710729	A	0.763627116999664	0	lncRNA	ENST00000478301	XR_108468	XR_108468	NA	NA	LOC100506673	NA	ENST00000478301	THC2547750	NA	"PREDICTED: Homo sapiens hypothetical LOC100506673 (LOC100506673), miscRNA [XR_108468]"	chr3:114406374-114406433	hs|3q13.31	Agilent_HUMAN_G3V2	ENST00000478301	ENST00000478301	chr3	114406374	114406433	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11756_PI429285431	1.7400186	A	2.635046	A	0.537736982305781	0	lncRNA	13336-1_{1..1264}	lnc-OSTC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OSTC-1:1	chr4	109591105	109592368	+	lnc-OSTC-1	lnc-OSTC-1:1	XLOC_003640	linc-SEC24B-3	OSTC	NA	chr4:109581105-109588978	inter
CUST_48445_PI429285431	0.87636375	A	0.87677646	A	0.999713972140881	0	lncRNA	52299-1_{1..677}	hg19_lincRNAsTranscripts_TCONS_l2_00001689 range=chr1:187454055-187515717 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001689 range=chr1:187454055-187515717 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	187454055	187454731	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3940_PI429285431	0.8929653	A	0.910834	A	0.987690747311997	0	lncRNA	3910-1_{1..469}	"transcript_id ""ENST00000534128.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534128.1"" | genecode_v17"	chr11	 45834770	 45835238	+	ENSG00000255447.1	ENST00000534128.1	CTD-2210P24.6	CTD-2210P24.6-001	SLC35C1	NA	chr11:45825623-45834567	inter
CUST_21679_PI429285431	1.2219093	A	1.0302105	A	1.14210777734179	0	lncRNA	23289-1_{1..367}	lnc-SHANK2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHANK2-3:1	chr11	 70173206	 70173572	-	lnc-SHANK2-3	lnc-SHANK2-3:1	ENSG00000255539.1	CTA-797E19.2	PPFIA1	"hg19_refFlat_PPFIA1:range=chr11:70118279-702243095'pad=0,hg19_refFlat_PPFIA1:range=chr11:70118279-702243095'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_PPFIA1:range=chr11:70118279-702282525'pad=0,hg19_refFlat_PPFIA1:range=chr11:70118279-702282525'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10chr11:70163206-70183315"	NA	inner
LNCA_21_P0003136	0.87418795	A	0.8776052	A	0.997634145852108	0	lncRNA	TCONS_00006553	NA	NA	NA	NA	XLOC_003177	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003177), lincRNA [TCONS_00006553]"	chr3:86954890-86954831	hs|3p12.1	Agilent_HUMAN_G3V2	TCONS_00006553	TCONS_00006553	chr3	 86954831	 86954890	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002237	1.3639753	A	0.8768041	A	1.40169377372288	0	lncRNA	TCONS_00003727	NA	NA	NA	NA	XLOC_001515	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001515), lincRNA [TCONS_00003727]"	chr2:67831351-67831410	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00003727	TCONS_00003727	chr2	 67831351	 67831410	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38820_PI429285431	18.086988	P	17.901638	P	1.13709280021062	0	lncRNA	39814-1_{1..907}	n384605|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jfy.2||4.1821400|-0.1143907	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384605|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jfy.2||4.1821400|-0.1143907	chr5	 17353821	 17354727	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011073	0.87405	A	0.87542516	A	0.999047265862822	0	lncRNA	AK055957	NA	AK055957	NA	NA	XLOC_l2_003240	NA	NA	THC2512206	NA	"BROAD Institute lincRNA (XLOC_l2_003240), lincRNA [TCONS_l2_00006033]"	chr12:133485594-133485653	hs|12q24.33	Agilent_HUMAN_G3V2	AK055957	AK055957	chr12	133485594	133485653	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33637_PI429285431	1.5090445	A	1.4270564	A	1.058475664054	0	lncRNA	35202-1_{1..2008}	n340399|AK092568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2860|NULL|-1.0336800|-0.2827385	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340399|AK092568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2860|NULL|-1.0336800|-0.2827385	chr5	 10752438	 10754445	-	NA	NA	NA	NA	DAP	NA	chr5:10742438-10761387	inner
LNCA_21_P0006096	0.874458	A	0.8753803	A	0.999360914657456	0	lncRNA	ENST00000445897	NA	NA	NA	NA	XLOC_007817	NA	ENST00000445897	NA	NA	"BROAD Institute lincRNA (XLOC_007817), lincRNA [TCONS_00015862]"	chr9:108823704-108823645	hs|9q31.2	Agilent_HUMAN_G3V2	ENST00000445897	ENST00000445897	chr9	108823645	108823704	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15911_PI429285431	5.0079823	P	4.8440104	P	1.12036739209773	0	lncRNA	17606-1_{1..412}	lnc-MKI67IP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MKI67IP-1:1	chr2	123262542	123262953	-	lnc-MKI67IP-1	lnc-MKI67IP-1:1	XLOC_002301	linc-MKI67IP-3	NA	NA	NA	inter
CUST_38349_PI429285431	0.9092558	A	0.89830565	A	1.00761894316174	0	lncRNA	39393-1_{1..2312}	n382098|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vpx.1||1.5776300|-0.3454220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382098|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vpx.1||1.5776300|-0.3454220	chr13	103532448	103534759	+	NA	NA	NA	NA	BIVM-ERCC5	NA	chr13:103522448-103528351	inter
CUST_1235_PI429285431	1.2395911	A	0.8832461	A	1.28017851372709	0	lncRNA	1227-1_{1..214}	"transcript_id ""ENST00000422353.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422353.1"" | genecode_v17"	chr2	216397856	216398069	+	ENSG00000237525.2	ENST00000422353.1	AC012668.2	AC012668.2-002	NA	NA	NA	inter
CUST_39637_PI429285431	7.9585056	P	8.233506	P	0.82645008901356	0	lncRNA	40576-1_{1..606}	n405213|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000048979||-1.0146500|-0.3322606	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405213|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000048979||-1.0146500|-0.3322606	chr10	 81378440	 81379045	-	NA	NA	NA	NA	SFTPA1	NA	chr10:81368440-81375199	inter
CUST_11335_PI429285431	2.110106	A	1.5928861	A	1.43119465047368	0	lncRNA	12898-1_{1..786}	lnc-SIAH2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIAH2-1:5	chr3	150455087	150455872	-	lnc-SIAH2-1	lnc-SIAH2-1:5	XLOC_003284	linc-FAM194A	SIAH2	NA	chr3:150458910-150465302	inter
CUST_31689_PI429285431	0.8870651	A	1.0132887	A	0.916226629803553	0	lncRNA	33435-1_{1..378}	n338216|AF147317|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|608|NULL|-0.8405750|-0.1935440	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338216|AF147317|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|608|NULL|-0.8405750|-0.1935440	chr14	 23456111	 23456488	+	NA	NA	NA	NA	C14orf93	"hg19_refFlat_C14orf93:range=chr14:23456424-234682325'pad=0,hg19_refFlat_C14orf93:range=chr14:23456424-234682325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr14:23456110-23466486"	NA	inner
CUST_25004_PI429285431	3.1969342	A	3.1858559	P	1.00770845071463	0	lncRNA	26544-1_{1..544}	lnc-RP11-148O21.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-148O21.2.1-2:1	chr8	 11415399	 11415942	-	lnc-RP11-148O21.2.1-2	lnc-RP11-148O21.2.1-2:1	ENSG00000255518.1	RP11-148O21.4	BLK	"hg19_refFlat_BLK:range=chr8:11400734-114216175'pad=0,hg19_refFlat_BLK:range=chr8:11400734-114216175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20chr8:11405399-11422108"	NA	inner
CUST_19383_PI429285431	0.9019228	A	1.638488	A	0.600166542361807	0	lncRNA	21045-1_{1..1506}	lnc-ZNF862-1:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:16	chr7	149524858	149526363	+	lnc-ZNF862-1	lnc-ZNF862-1:16	ENSG00000197558.7	SSPO	SSPO	NA	chr7:149514858-149531054	inner
CUST_39404_PI429285431	0.9007137	A	0.90932953	A	0.994045758901788	0	lncRNA	40364-1_{1..437}	n386604|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ptc.1||-0.9797260|-0.3680587	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386604|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ptc.1||-0.9797260|-0.3680587	chr1	212317864	212318300	+	NA	NA	NA	NA	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.82;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00"	NA	inter
CUST_21576_PI429285431	0.92489374	A	1.4180427	A	0.71047266064581	0	lncRNA	23190-1_{1..1102}	lnc-SLC1A2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-SLC1A2-2:1	chr11	 35159245	 35160346	-	lnc-SLC1A2-2	lnc-SLC1A2-2:1	ENSG00000255521.1	RP4-607I7.1	CD44	NA	chr11:35160417-35169579	inter
CUST_36813_PI429285431	0.9061425	A	0.91737336	A	0.992245582884627	0	lncRNA	37984-2_{3001..3353}	n345292|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_841|NULL|-1.2907700|-0.3125293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345292|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_841|NULL|-1.2907700|-0.3125293	chr15	 39695629	 39695981	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3111_PI429285431	1.1654443	A	0.89721835	A	1.20432598390933	0	lncRNA	3090-1_{1..558}	"transcript_id ""ENST00000523786.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523786.1"" | genecode_v17"	chr8	 57432678	 57433235	-	ENSG00000246430.2	ENST00000523786.1	RP11-16M8.2	RP11-16M8.2-007	NA	NA	NA	inter
CUST_35418_PI429285431	0.904106	A	0.8904498	A	1.00951069849178	0	lncRNA	36828-1_{1..929}	n342481|AF334867|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4975|NULL|1.0847400|-0.3346204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342481|AF334867|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4975|NULL|1.0847400|-0.3346204	chr16	 49551556	 49552484	-	NA	NA	NA	NA	ZNF423	NA	chr16:49541556-49562496	inner
LNCA_21_P0002217	0.87113917	A	1.3828584	A	0.701386112251437	0	lncRNA	TCONS_00003681	NA	NA	NA	NA	XLOC_001475	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001475), lincRNA [TCONS_00003681]"	chr2:54662960-54663019	hs|2p16.2	Agilent_HUMAN_G3V2	TCONS_00003681	TCONS_00003681	chr2	 54662960	 54663019	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21500_PI429285431	0.8953572	A	0.9067107	A	0.992161238083584	0	lncRNA	23118-1_{1..364}	lnc-CLEC14A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLEC14A-2:1	chr14	 38473945	 38474308	-	lnc-CLEC14A-2	lnc-CLEC14A-2:1	ENSG00000258696.1	CTD-2058B24.3	NA	NA	NA	inter
CUST_2087_PI429285431	0.89795566	A	1.017706	A	0.920346903912201	0	lncRNA	2078-1_{1..372}	"transcript_id ""ENST00000502209.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000502209.2"" | genecode_v17"	chr5	 12554002	 12554373	-	ENSG00000248783.1	ENST00000502209.2	RP11-308B16.2	RP11-308B16.2-001	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70"	NA	inter
CUST_43490_PI429285431	2.8656216	A	3.0496595	P	0.880235889217769	0	lncRNA	48283-2_{3001..4133}	"gi|384551676|ref|NR_047584.1| Homo sapiens interleukin 12 receptor, beta 2 (IL12RB2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384551676|ref|NR_047584.1| Homo sapiens interleukin 12 receptor, beta 2 (IL12RB2), transcript variant 6, non-coding RNA"	Chr1	 67776047	 67777179	+	3595	NR_047584.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30"	NA	inter
LNCA_21_P0007436	1.5959486	A	0.92337394	A	1.59391496065819	0	lncRNA	TCONS_00019908	NA	NA	NA	NA	XLOC_009143	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009143), lincRNA [TCONS_00019908]"	chr11:60803432-60807472	hs|11q12.2	Agilent_HUMAN_G3V2	TCONS_00019908	TCONS_00019908	chr11	 60803432	 60807472	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40093_PI429285431	5.221431	P	5.62489	P	0.756043421714628	0	lncRNA	40938-2_{3001..3118}	n407453|NR_026909|lncRNA|Homosapiens||RefGeneNoncode|NR_026909||3.5553500|-0.2239783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407453|NR_026909|lncRNA|Homosapiens||RefGeneNoncode|NR_026909||3.5553500|-0.2239783	chr2	220113200	220113317	+	NA	NA	NA	NA	GLB1L	NA	chr2:220101493-220110131	inner
CUST_7866_PI429285431	0.89461476	A	0.9030448	A	0.9941737801735	0	lncRNA	9488-1_{1..408}	lnc-RP11-167N24.6.1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-167N24.6.1-4:2	chr12	 95830530	 95830937	-	lnc-RP11-167N24.6.1-4	lnc-RP11-167N24.6.1-4:2	ENSG00000257943	RP11-167N24.3	NA	NA	NA	inter
LNCA_21_P0009704	1.6013768	A	2.0111654	A	0.752733664677751	0	lncRNA	TCONS_00026982	NA	NA	NA	NA	XLOC_013031	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013031), lincRNA [TCONS_00026982]"	chr19:29939233-29939292	hs|19q12	Agilent_HUMAN_G3V2	TCONS_00026982	TCONS_00026982	chr19	 29939233	 29939292	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4769_PI429285431	1.0140553	A	2.231949	A	0.429909918381671	0	lncRNA	4715-1_{1..886}	"transcript_id ""ENST00000546376.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546376.1"" | genecode_v17"	chr14	 36530232	 36531117	-	ENSG00000257826.1	ENST00000546376.1	RP11-116N8.4	RP11-116N8.4-001	NA	NA	NA	inter
CUST_36972_PI429285431	3.7873025	P	3.6925807	P	1.06785946906486	0	lncRNA	38119-1_{1..434}	n345435|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_984|NULL|-1.2979000|-0.2316303	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345435|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_984|NULL|-1.2979000|-0.2316303	chr1	 33859088	 33859521	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16229_PI429285431	3.5106997	P	2.7869592	A	1.65145825256195	0	lncRNA	17936-1_{1..599}	lnc-TUBGCP3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TUBGCP3-1:2	chr13	113343959	113344557	-	lnc-TUBGCP3-1	lnc-TUBGCP3-1:2	XLOC_010734	linc-TUBGCP3-2	ATP11A	NA	chr13:113344643-113353964	inter
CUST_26148_PI429285431	4.937537	P	4.3387737	P	1.51441782808332	0	lncRNA	27659-1_{1..633}	lnc-GDE1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GDE1-1:1	chr16	 19499146	 19499778	-	lnc-GDE1-1	lnc-GDE1-1:1	ENSG00000260592.1	CTA-363E6.6	TMC5	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TMC5:range=chr16:19451361-195092885'pad=0,hg19_refFlat_TMC5:range=chr16:19451361-195092885'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TMC5:range=chr16:19468029-195092885'pad=0,hg19_refFlat_TMC5:range=chr16:19468029-195092885'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00chr16:19489146-19509221"	NA	inner
CUST_43950_PI429285431	4.7548456	P	3.2564352	P	2.82531240431275	0	lncRNA	48660-1_{1..3000}	"gi|386869391|ref|NR_048559.1| Homo sapiens translin (TSN), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386869391|ref|NR_048559.1| Homo sapiens translin (TSN), transcript variant 6, non-coding RNA"	Chr2	122513121	122516120	+	7247	NR_048559.1	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30"	NA	inter
CUST_42757_PI429285431	5.289668	P	4.927186	P	1.28563579271116	0	lncRNA	45722-1_{1..72}	ENST00000459083 ncrna:snoRNA chromosome:GRCh37:17:27050700:27050771:1 gene:ENSG00000238597 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459083 ncrna:snoRNA chromosome:GRCh37:17:27050700:27050771:1 gene:ENSG00000238597 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 27050700	 27050771	+	ENSG00000238597	ENST00000459083	NA	NA	RPL23A	NA	chr17:27047000-27051374	inner
LNCA_21_P0014090	6.812071	P	7.593831	P	0.581656774426739	0	lncRNA	XR_108406	XR_108406	XR_108406	NA	Hs.570275	LOC100506892	uncharacterized LOC100506892	NA	THC2626240	NA	"PREDICTED: Homo sapiens hypothetical LOC100506892 (LOC100506892), miscRNA [XR_108406]"	chr2:179644609-179644668	hs|2q31.2	Agilent_HUMAN_G3V2	XR_108406	XR_108406	chr2	179644609	179644668	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19500_PI429285431	3.3639681	A	2.2053275	A	2.23246970831442	0	lncRNA	21156-1_{1..535}	lnc-MIXL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MIXL1-2:1	chr1	226342304	226342838	+	lnc-MIXL1-2	lnc-MIXL1-2:1	ENSG00000234478.1	RP11-275I14.4	ACBD3	"hg19_refFlat_ACBD3:range=chr1:226334311-2263743765'pad=0,hg19_refFlat_ACBD3:range=chr1:226334311-2263743765'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00chr1:226332380-226352772"	NA	inner
LNCA_21_P0005367	0.90129864	A	3.6225863	P	0.151638956616127	0	lncRNA	TCONS_00013402	NA	NA	NA	NA	XLOC_006034	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006034), lincRNA [TCONS_00013402]"	chr7:30241864-30241923	hs|7p14.3	Agilent_HUMAN_G3V2	TCONS_00013402	TCONS_00013402	chr7	 30241864	 30241923	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002083	8.879125	P	8.325999	P	1.46726148411986	0	lncRNA	ENST00000449772	NA	BC014368	NA	NA	XLOC_002237	NA	ENST00000449772	NA	NA	"BROAD Institute lincRNA (XLOC_002237), lincRNA [TCONS_00003349]"	chr2:105028747-105028688	hs|2q12.1	Agilent_HUMAN_G3V2	ENST00000449772	ENST00000449772	chr2	105028688	105028747	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27234_PI429285431	6.826159	P	6.4306326	P	1.31542263442974	0	lncRNA	28781-1_{1..1025}	n324372|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042411|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042411|-0.8190340|-0.2283566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324372|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042411|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042411|-0.8190340|-0.2283566	chr6	138186502	138187526	-	NA	NA	NA	NA	TNFAIP3	NA	chr6:138188581-138198724	inter
CUST_31842_PI429285431	1.6465614	A	1.5571265	A	1.06395335298476	0	lncRNA	33576-1_{1..2439}	n338390|AK090883|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|786|NULL|-1.2629100|-0.3781350	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338390|AK090883|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|786|NULL|-1.2629100|-0.3781350	chr1	179891689	179894127	+	NA	NA	NA	NA	TOR1AIP1	NA	chr1:179881689-179889211	inter
CUST_40951_PI429285431	2.2080336	A	3.1193652	P	0.531694113782152	0	lncRNA	41628-1_{1..2445}	n410941|NR_038403|lncRNA|Homosapiens||RefGeneNoncode|NR_038403||-0.5717480|-0.2291227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410941|NR_038403|lncRNA|Homosapiens||RefGeneNoncode|NR_038403||-0.5717480|-0.2291227	chr1	 47004367	 47006811	+	NA	NA	NA	NA	MKNK1	NA	chr1:47023090-47045927	inter
CUST_27978_PI429285431	1.0828207	A	0.8987986	A	1.13604666724413	0	lncRNA	29583-1_{1..517}	n325228|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329774|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329774|-1.1072100|-0.2646381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325228|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329774|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329774|-1.1072100|-0.2646381	chr2	100589921	100590437	+	NA	NA	NA	NA	AFF3	NA	chr2:100579921-100602245	inner
CUST_18949_PI429285431	3.1046271	P	3.3699028	P	0.832039716164116	0	lncRNA	20640-1_{1..931}	lnc-GPC5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-GPC5-1:1	chr13	 92006187	 92007117	+	lnc-GPC5-1	lnc-GPC5-1:1	ENSG00000215417	MIR17HG	NA	NA	NA	inter
LNCA_21_P0008839	0.88408625	A	1.1910446	A	0.808344205026463	0	lncRNA	TCONS_00024008	NA	NA	NA	NA	XLOC_011354	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011354), lincRNA [TCONS_00024008]"	chr15:92179190-92180063	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00024008	TCONS_00024008	chr15	 92179190	 92180063	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2506_PI429285431	0.9043773	A	0.90448225	A	0.999927256849311	0	lncRNA	2498-1_{1..2141}	"transcript_id ""ENST00000430364.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430364.1"" | genecode_v17"	chr6	 31409444	 31411584	+	ENSG00000230174.1	ENST00000430364.1	XXbac-BPG181B23.4	XXbac-BPG181B23.4-001	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10"	NA	inter
CUST_23803_PI429285431	0.90058255	A	0.89748883	A	1.00214670417256	0	lncRNA	25368-1_{1..851}	lnc-SPI1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPI1-1:2	chr11	 47430503	 47431353	-	lnc-SPI1-1	lnc-SPI1-1:2	ENSG00000255197.1	RP11-750H9.5	SLC39A13	NA	chr11:47430046-47438051	inner
CUST_12297_PI429285431	0.89078933	A	0.8887898	A	1.00138692948027	0	lncRNA	13908-1_{1..473}	lnc-ENC1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENC1-3:2	chr5	 73616990	 73617462	-	lnc-ENC1-3	lnc-ENC1-3:2	XLOC_004885	linc-ANKRA2-5	NA	NA	NA	inter
CUST_15343_PI429285431	0.8820502	A	0.8920428	A	0.993097589308648	0	lncRNA	17022-1_{1..308}	lnc-MCTP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MCTP2-3:1	chr15	 95222657	 95222964	+	lnc-MCTP2-3	lnc-MCTP2-3:1	XLOC_011365	linc-NR2F2-6	NA	NA	NA	inter
CUST_29066_PI429285431	1.751464	A	1.1452268	A	1.52228364578677	0	lncRNA	30795-1_{1..342}	n326557|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026864|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026864|-0.4373570|-0.2466771	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326557|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000026864|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000026864|-0.4373570|-0.2466771	chr1	 79562041	 79562382	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_65_PI429285431	2.0896344	A	2.9442153	A	0.553025956252763	0	lncRNA	64-1_{1..616}	"transcript_id ""ENST00000398554.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000398554.1"" | genecode_v17"	chr17	 37775866	 37776481	+	ENSG00000214546.3	ENST00000398554.1	AC087491.2	AC087491.2-001	PPP1R1B	NA	chr17:37783177-37788766	inter
CUST_48430_PI429285431	1.9416668	A	2.6045637	A	0.631608766266962	0	lncRNA	52282-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00001519 range=chr1:149694163-149720868 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001519 range=chr1:149694163-149720868 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	149694163	149697162	-	NA	NA	NA	NA	HIST2H2BF	NA	chr1:149728271-149730868	inter
CUST_12418_PI429285431	5.484293	P	5.614115	P	0.913944205890561	0	lncRNA	14031-1_{1..2281}	lnc-RP11-17M16.1.1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-17M16.1.1-7:1	chr18	 73933519	 73935799	+	lnc-RP11-17M16.1.1-7	lnc-RP11-17M16.1.1-7:1	XLOC_012724	linc-ZNF236-6	NA	NA	NA	inter
CUST_5577_PI429285431	3.2661066	P	4.1512084	P	0.541449315461017	0	lncRNA	5506-1_{1..539}	"transcript_id ""ENST00000563855.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563855.1"" | genecode_v17"	chr16	 63565137	 63565675	-	ENSG00000260658.1	ENST00000563855.1	RP11-368L12.1	RP11-368L12.1-001	NA	NA	NA	inter
CUST_24229_PI429285431	2.9494555	A	3.7652783	P	0.568084403461793	0	lncRNA	25780-1_{1..1639}	lnc-AMFR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AMFR-1:1	chr16	 56385798	 56387436	-	lnc-AMFR-1	lnc-AMFR-1:1	ENSG00000259860.1	RP11-441F2.1	GNAO1	NA	chr16:56375798-56391356	inner
CUST_26625_PI429285431	2.189763	A	1.9582683	A	1.17405069114319	0	lncRNA	28128-1_{1..1759}	lnc-GAMT-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GAMT-2:2	chr19	  1389327	  1391085	-	lnc-GAMT-2	lnc-GAMT-2:2	ENSG00000176936.2	AC005329.6	NDUFS7	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NDUFS7:range=chr19:1383926-13954875'pad=0,hg19_refFlat_NDUFS7:range=chr19:1383926-13954875'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70chr19:1383883-1395588"	NA	inner
LNCA_33_P3225630	0.8738574	A	0.87591237	A	0.9985766173098	0	lncRNA	XR_111876	XR_111876	XR_111876	   400706	Hs.630811	LOC400706	uncharacterized LOC400706	NA	NP1154605	NA	"PREDICTED: Homo sapiens hypothetical LOC400706 (LOC400706), miscRNA [XR_111876]"	chr19:46580350-46580291	hs|19q13.32	Agilent_HUMAN_G3V2	XR_111876	XR_111876	chr19	 46580291	 46580350	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7533_PI429285431	5.5498543	P	5.79571	P	0.843315455403566	0	lncRNA	9170-2_{3001..3680}	lnc-NR2C2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NR2C2-1:1	chr3	 15117522	 15118201	+	lnc-NR2C2-1	lnc-NR2C2-1:1	ENSG00000244821	ENST00000500283	MRPS25	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZFYVE20:range=chr3:15115289-151376275'pad=0,hg19_refFlat_ZFYVE20:range=chr3:15115289-151376275'pad=0 3'pad=0 strand=- repeatMasking=none,-99.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70chr3:15104522-15106816"	NA	inner
CUST_39429_PI429285431	0.8975165	A	0.8904752	A	1.00489258705057	0	lncRNA	40381-9_{24001..27000}	n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	chr13	 19432542	 19435541	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
LNCA_21_P0012255	2.3691444	A	1.9350919	A	1.35102324768374	0	lncRNA	TCONS_l2_00017632	NA	NA	NA	NA	XLOC_l2_009316	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009316), lincRNA [TCONS_l2_00017632]"	chr22:22012254-22012606	hs|22q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00017632	TCONS_l2_00017632	chr22	 22012254	 22012606	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15290_PI429285431	1.172879	A	0.9833449	A	1.14039538022454	0	lncRNA	16967-1_{1..422}	lnc-H2AFV-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-H2AFV-1:1	chr7	 44826723	 44827144	-	lnc-H2AFV-1	lnc-H2AFV-1:1	XLOC_006426	linc-TMED4-1	PPIA	NA	chr7:44836241-44836939	inter
CUST_13344_PI429285431	1.7363167	A	1.9273654	A	0.875968745132592	0	lncRNA	14981-1_{1..564}	lnc-SYT10-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYT10-3:1	chr12	 34372061	 34372624	-	lnc-SYT10-3	lnc-SYT10-3:1	XLOC_010049	linc-SYT10-2	NA	NA	NA	inter
CUST_22928_PI429285431	0.9170149	A	0.8846121	A	1.02271403218704	0	lncRNA	24504-1_{1..320}	lnc-USP35-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP35-5:1	chr11	 78467290	 78467609	+	lnc-USP35-5	lnc-USP35-5:1	ENSG00000254563.1	RP11-673F18.1	ODZ4	NA	chr11:78457290-78477525	inner
CUST_27751_PI429285431	1.1898003	A	1.3014468	A	0.925531180874014	0	lncRNA	29333-1_{1..438}	n324968|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079617|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079617|-1.0582800|-0.3843141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324968|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079617|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079617|-1.0582800|-0.3843141	chr20	 46422161	 46422598	+	NA	NA	NA	NA	SULF2	NA	chr20:46412161-46415360	inter
LNCA_21_P0003557	2.8290884	A	1.9708302	A	1.81284829405376	0	lncRNA	THC2722672	NA	NA	NA	NA	XLOC_003417	NA	NA	THC2722672	NA	"BROAD Institute lincRNA (XLOC_003417), lincRNA [TCONS_00007952]"	chr4:001045175-001045234	hs|4p16.3	Agilent_HUMAN_G3V2	THC2722672	THC2722672	chr4	  1045175	  1045234	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28357_PI429285431	1.6803168	A	1.9939854	A	0.804593171989216	0	lncRNA	30006-1_{1..888}	n325666|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045420|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045420|-1.3462700|-0.4699035	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325666|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045420|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045420|-1.3462700|-0.4699035	chr13	 87991119	 87992006	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002531	0.8726425	A	0.8770214	A	0.99696937944108	0	lncRNA	TCONS_00004544	NA	NA	NA	NA	XLOC_002452	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002452), lincRNA [TCONS_00004544]"	chr2:200527665-200527606	hs|2q33.1	Agilent_HUMAN_G3V2	TCONS_00004544	TCONS_00004544	chr2	200527606	200527665	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011076	3.9292002	P	3.6199682	P	1.23904793324285	0	lncRNA	TCONS_l2_00006067	NA	NA	NA	NA	XLOC_l2_003270	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003270), lincRNA [TCONS_l2_00006067]"	chr12:5346202-5336173	hs|12p13.32	Agilent_HUMAN_G3V2	TCONS_l2_00006067	TCONS_l2_00006067	chr12	  5336173	  5346202	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1965_PI429285431	0.88438976	A	0.89417964	A	0.993237144018779	0	lncRNA	1958-1_{1..2163}	"transcript_id ""ENST00000507838.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507838.1"" | genecode_v17"	chr4	166605791	166607953	+	ENSG00000249500.1	ENST00000507838.1	RP11-340B18.1	RP11-340B18.1-001	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90"	NA	inter
CUST_5572_PI429285431	0.87773234	A	0.88494694	A	0.995011703432632	0	lncRNA	5501-1_{1..445}	"transcript_id ""ENST00000569328.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569328.1"" | genecode_v17"	chr16	 58881712	 58882156	-	ENSG00000261638.1	ENST00000569328.1	RP11-700H13.1	RP11-700H13.1-001	NA	NA	NA	inter
CUST_3858_PI429285431	2.4986217	A	3.2250822	P	0.604384890926455	0	lncRNA	3827-1_{1..550}	"transcript_id ""ENST00000527997.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527997.1"" | genecode_v17"	chr11	 12108438	 12108987	+	ENSG00000255400.1	ENST00000527997.1	RP13-631K18.5	RP13-631K18.5-001	NA	NA	NA	inter
CUST_26796_PI429285431	2.5359745	A	2.9207544	A	0.765895836001011	0	lncRNA	28304-1_{1..697}	n323860|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058987|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058987|-0.9759220|-0.3235962	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323860|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058987|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058987|-0.9759220|-0.3235962	chrX	 70799569	 70800265	-	NA	NA	NA	NA	OGT	NA	chrX:70789569-70795747	inter
CUST_44677_PI429285431	5.9261513	P	6.1881785	P	0.833915321368087	0	lncRNA	49237-1_{1..515}	"gi|397139128|ref|XR_108680.2| PREDICTED: Homo sapiens JARID2 antisense RNA 1 (JARID2-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139128|ref|XR_108680.2| PREDICTED: Homo sapiens JARID2 antisense RNA 1 (JARID2-AS1), misc_RNA"	Chr6	 15248048	 15248562	-	100506681	XR_108680.2	NA	NA	NA	NA	NA	inter
CUST_8998_PI429285431	1.2136803	A	1.869534	A	0.634699803023998	0	lncRNA	10528-1_{1..3000}	lnc-ARHGEF10L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARHGEF10L-1:1	chr1	 17872452	 17875451	+	lnc-ARHGEF10L-1	lnc-ARHGEF10L-1:1	ENSG00000249753	ENST00000509615	ARHGEF10L	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90chr1:17866330-17884245"	NA	inner
CUST_18926_PI429285431	5.84629	P	5.588891	P	1.19532174417159	0	lncRNA	20617-1_{1..387}	lnc-SERPINB8-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SERPINB8-2:2	chr18	 61826330	 61826716	+	lnc-SERPINB8-2	lnc-SERPINB8-2:2	ENSG00000236392	AC100848.1	NA	NA	NA	inter
CUST_32026_PI429285431	2.6171994	A	0.9145649	A	3.25494801005322	0	lncRNA	33746-2_{3001..3782}	n338590|AK095715|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|996|NULL|-1.0256300|-0.3167764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338590|AK095715|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|996|NULL|-1.0256300|-0.3167764	chr1	240077962	240078743	+	NA	NA	NA	NA	CHRM3	NA	chr1:240064962-240072720	inter
LNCA_33_P3223062	0.9054768	A	0.9285712	A	0.984119625935167	0	lncRNA	XR_110934	XR_110934	XR_110934	100507199	NA	LOC100507199	uncharacterized LOC100507199	ENST00000445330	THC2757969	NA	"PREDICTED: Homo sapiens hypothetical LOC100507199, transcript variant 1 (LOC100507199), miscRNA [XR_110934]"	chrX:151072969-151072910	hs|Xq28	Agilent_HUMAN_G3V2	XR_110934	XR_110934	chrX	151072910	151072969	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00805950	11.104373	P	11.64154	P	0.689122802061676	0	lncRNA	ENST00000367716	NA	NA	NA	NA	XLOC_l2_001196	NA	ENST00000367716	THC2649241	NA	"BROAD Institute lincRNA (XLOC_l2_001196), lincRNA [TCONS_l2_00001622]"	chr1:173387056-173386997	hs|1q25.1	Agilent_HUMAN_G3V2	ENST00000367716	ENST00000367716	chr1	173386997	173387056	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16223_PI429285431	5.4306116	P	6.1563663	P	0.60468064242356	0	lncRNA	17929-1_{1..739}	lnc-PFKP-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PFKP-8:1	chr10	  3731619	  3732357	+	lnc-PFKP-8	lnc-PFKP-8:1	XLOC_008351	linc-AKR1E2-12	NA	NA	NA	inter
CUST_42618_PI429285431	7.391047	P	7.902251	P	0.701636643162718	0	lncRNA	45483-1_{1..96}	ENST00000516006 ncrna:snoRNA chromosome:GRCh37:15:25344646:25344741:1 gene:ENSG00000251815 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516006 ncrna:snoRNA chromosome:GRCh37:15:25344646:25344741:1 gene:ENSG00000251815 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 25344646	 25344741	+	ENSG00000251815	ENST00000516006	NA	NA	SNRPN	NA	chr15:25334646-25354741	inter
LNCA_21_P0012109	0.900074	A	0.9202218	A	0.986131672935592	0	lncRNA	ENST00000417299	NA	NA	NA	NA	XLOC_l2_008546	NA	ENST00000417299	THC2684837	NA	"BROAD Institute lincRNA (XLOC_l2_008546), lincRNA [TCONS_l2_00016732]"	chr20:10734511-10734570	hs|20p12.2	Agilent_HUMAN_G3V2	ENST00000417299	ENST00000417299	chr20	 10734511	 10734570	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27807_PI429285431	1.1485026	A	0.91096133	A	1.17898165491675	0	lncRNA	29393-1_{1..2320}	n325035|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078299|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078299|-0.1444730|-0.3721039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325035|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078299|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078299|-0.1444730|-0.3721039	chr20	 22604709	 22607028	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001097	0.8910412	A	0.90759	A	0.988594784207244	0	lncRNA	ENST00000423628	NA	NA	NA	NA	XLOC_000695	NA	ENST00000423628	NA	NA	"BROAD Institute lincRNA (XLOC_000695), lincRNA [TCONS_00000467]"	chr1:8066636-8066577	hs|1p36.23	Agilent_HUMAN_G3V2	ENST00000423628	ENST00000423628	chr1	  8066577	  8066636	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15025_PI429285431	0.88029975	A	0.8912044	A	0.992469966430086	0	lncRNA	16687-1_{1..549}	lnc-PDGFD-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDGFD-5:1	chr11	103509682	103510230	-	lnc-PDGFD-5	lnc-PDGFD-5:1	XLOC_009534	linc-DCUN1D5-1	NA	NA	NA	inter
CUST_6864_PI429285431	4.606402	P	4.718608	P	0.925172314806166	0	lncRNA	6814-1_{1..423}	"transcript_id ""ENST00000436845.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436845.1"" | genecode_v17"	chr21	 39698274	 39698696	-	ENSG00000231231.1	ENST00000436845.1	AP001422.3	AP001422.3-001	NA	NA	NA	inter
CUST_20585_PI429285431	1.637452	A	2.1032314	A	0.724079795512827	0	lncRNA	22226-1_{1..3000}	lnc-CTDSP2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTDSP2-4:2	chr12	 58488697	 58491696	-	lnc-CTDSP2-4	lnc-CTDSP2-4:2	ENSG00000264432.1	RP11-489P6.1	NA	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-61.90;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-59.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30"	NA	inter
CUST_4415_PI429285431	5.708093	P	5.068203	P	1.5582103471896	0	lncRNA	4365-1_{1..589}	"transcript_id ""ENST00000550905.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550905.1"" | genecode_v17"	chr12	114117264	114117852	-	ENSG00000249550.2	ENST00000550905.1	RP11-438N16.1	RP11-438N16.1-006	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_28016_PI429285431	5.2661333	P	5.4469156	P	0.882224481187786	0	lncRNA	29626-1_{1..397}	n325272|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328261|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328261|-1.1563000|-0.1709059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325272|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328261|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328261|-1.1563000|-0.1709059	chr2	 67002145	 67002541	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012645	0.8790284	A	0.888415	A	0.993514824785003	0	lncRNA	TCONS_l2_00020950	NA	NA	NA	NA	XLOC_l2_010989	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010989), lincRNA [TCONS_l2_00020950]"	chr4:188337029-188337088	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_l2_00020950	TCONS_l2_00020950	chr4	188337029	188337088	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33281_PI429285431	0.9090967	A	0.9238272	A	0.989841544679367	0	lncRNA	34865-1_{1..3000}	n339991|S60415|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2444|NULL|10.5568000|-0.2234389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339991|S60415|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2444|NULL|10.5568000|-0.2234389	chr10	 18429605	 18432604	+	NA	NA	NA	NA	NSUN6	NA	chr10:18834264-18840039	inner
CUST_9841_PI429285431	0.8947636	A	1.1100914	A	0.861350426905479	0	lncRNA	11361-1_{1..625}	lnc-DNAH6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAH6-3:1	chr2	 84114133	 84114757	+	lnc-DNAH6-3	lnc-DNAH6-3:1	XLOC_001548	linc-DNAH6-2	NA	NA	NA	inter
CUST_38086_PI429285431	1.5743287	A	4.310331	P	0.150100189139958	0	lncRNA	39161-2_{3001..3565}	n381080|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001bgg.1||-0.7472240|-0.2156651	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381080|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001bgg.1||-0.7472240|-0.2156651	chr1	 23246782	 23247346	+	NA	NA	NA	NA	EPHB2	NA	chr1:23233782-23241823	inter
LNCA_21_P0002987	0.8756884	A	0.8816527	A	0.995874396054372	0	lncRNA	ENST00000471614	NA	NA	NA	NA	XLOC_002719	NA	ENST00000471614	NA	NA	"BROAD Institute lincRNA (XLOC_002719), lincRNA [TCONS_00006899]"	chr3:81889864-81889923	hs|3p12.2	Agilent_HUMAN_G3V2	ENST00000471614	ENST00000471614	chr3	 81889864	 81889923	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009357	3.570275	P	3.5585778	P	1.00814083908187	0	lncRNA	TCONS_00025747	NA	NA	NA	NA	XLOC_012564	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012564), lincRNA [TCONS_00025747]"	chr17:70027627-70027568	hs|17q24.3	Agilent_HUMAN_G3V2	TCONS_00025747	TCONS_00025747	chr17	 70027568	 70027627	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37221_PI429285431	0.8838565	A	0.89680994	A	0.99106154721061	0	lncRNA	38333-1_{1..984}	n345656|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1205|NULL|-1.3114800|-0.1791926	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345656|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1205|NULL|-1.3114800|-0.1791926	chr4	183125719	183126702	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51758_PI429285431	0.88341486	A	0.8791147	A	1.00298509031538	0	lncRNA	55311-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00013371 range=chr19:28926295-29218587 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013371 range=chr19:28926295-29218587 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 28926295	 28929294	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22141_PI429285431	1.5622379	A	2.3776133	A	0.568260601735455	0	lncRNA	23743-1_{1..3000}	lnc-DDOST-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DDOST-1:1	chr1	 20974808	 20977807	-	lnc-DDOST-1	lnc-DDOST-1:1	ENSG00000117242.7	PINK1-AS	PINK1	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_PINK1:range=chr1:20960042-209771845'pad=0,hg19_refFlat_PINK1:range=chr1:20960042-209771845'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.00;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20chr1:20964808-20978004"	NA	inner
CUST_20556_PI429285431	6.907674	P	7.1846914	P	0.825295454761446	0	lncRNA	22197-1_{1..313}	lnc-TWIST1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TWIST1-2:1	chr7	 18938932	 18939244	-	lnc-TWIST1-2	lnc-TWIST1-2:1	ENSG00000226522.1	AC004744.3	HDAC9	NA	chr7:18928932-18949056	inner
CUST_35098_PI429285431	0.8843941	A	1.1743709	A	0.817915211358472	0	lncRNA	36505-1_{1..563}	n342067|AL357212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4548|NULL|-0.9866320|-0.1759245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342067|AL357212|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4548|NULL|-0.9866320|-0.1759245	chr12	131463356	131463918	+	NA	NA	NA	NA	GPR133	NA	chr12:131453356-131473891	inner
CUST_155_PI429285431	0.8748308	A	0.87531024	A	0.999667732728753	0	lncRNA	146-1_{1..267}	"transcript_id ""ENST00000602916.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602916.1"" | genecode_v17"	chr1	  7760764	  7761030	-	ENSG00000269978.1	ENST00000602916.1	RP11-338N10.3	RP11-338N10.3-001	CAMTA1	NA	chr1:7750764-7771030	inner
LNCA_21_P0010428	1.4684032	A	0.8771223	A	1.50658377753755	0	lncRNA	ENST00000434237	NA	NA	NA	NA	XLOC_014287	NA	ENST00000434237	NA	NA	"BROAD Institute lincRNA (XLOC_014287), lincRNA [TCONS_00029630]"	chr22:50984913-50986053	hs|22q13.33	Agilent_HUMAN_G3V2	ENST00000434237	ENST00000434237	chr22	 50984913	 50986053	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47148_PI429285431	5.3813925	P	5.796385	P	0.750023393707279	0	lncRNA	51229-1_{1..845}	"gi|310123922|ref|XR_109483.1| PREDICTED: Homo sapiens uncharacterized LOC100505754 (LOC100505754), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123922|ref|XR_109483.1| PREDICTED: Homo sapiens uncharacterized LOC100505754 (LOC100505754), misc_RNA"	NA	NA	NA	NA	NA	XR_109483.1	NA	NA	NA	NA	NA	Unknown
CUST_46773_PI429285431	1.0959151	A	1.3858606	A	0.817932956635958	0	lncRNA	50922-1_{1..3000}	"gi|307775431|ref|NR_036647.1| Homo sapiens coiled-coil domain containing 144B (pseudogene) (CCDC144B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|307775431|ref|NR_036647.1| Homo sapiens coiled-coil domain containing 144B (pseudogene) (CCDC144B), non-coding RNA"	NA	NA	NA	NA	NA	NR_036647.1	NA	NA	NA	NA	NA	Unknown
CUST_33655_PI429285431	3.335012	P	3.8736196	P	0.688435023431313	0	lncRNA	35218-2_{3001..4386}	n340418|AK124789|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2879|NULL|-1.1411300|-0.3896031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340418|AK124789|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2879|NULL|-1.1411300|-0.3896031	chr5	 19470101	 19471486	-	NA	NA	NA	NA	CDH18	NA	chr5:19473140-19481509	inter
CUST_44841_PI429285431	0.89767134	A	0.90778697	A	0.993012903645055	0	lncRNA	49369-1_{1..2041}	"gi|254553264|ref|NR_028092.1| Homo sapiens lipoprotein, Lp(a)-like 2, pseudogene (LPAL2), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254553264|ref|NR_028092.1| Homo sapiens lipoprotein, Lp(a)-like 2, pseudogene (LPAL2), transcript variant 1, non-coding RNA"	Chr6	160888216	160890256	-	80350	NR_028092.1	NA	NA	NA	NA	NA	inter
CUST_44645_PI429285431	1.5670036	A	1.1783631	A	1.30915915776232	0	lncRNA	49209-1_{1..749}	"gi|310119675|ref|XR_110077.1| PREDICTED: Homo sapiens uncharacterized LOC100507546, transcript variant 1 (LOC100507546), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310119675|ref|XR_110077.1| PREDICTED: Homo sapiens uncharacterized LOC100507546, transcript variant 1 (LOC100507546), misc_RNA"	NA	NA	NA	NA	NA	XR_110077.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60"	NA	Unknown
CUST_10301_PI429285431	5.1218996	P	5.1216397	P	1.00018016518002	0	lncRNA	11828-1_{1..288}	lnc-ETAA1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ETAA1-2:1	chr2	 67777755	 67778042	+	lnc-ETAA1-2	lnc-ETAA1-2:1	XLOC_001514	linc-PNO1-2	NA	NA	NA	inter
CUST_19996_PI429285431	4.7843943	P	4.9463096	P	0.893837637636324	0	lncRNA	21649-1_{1..441}	lnc-JMJD7-PLA2G4B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JMJD7-PLA2G4B-2:1	chr15	 42190365	 42190805	+	lnc-JMJD7-PLA2G4B-2	lnc-JMJD7-PLA2G4B-2:1	ENSG00000260556.1	CTD-2382E5.3	EHD4	NA	chr15:42191638-42200773	inter
CUST_27679_PI429285431	2.7462306	A	2.9704223	P	0.856074524960821	0	lncRNA	29257-1_{1..412}	n324886|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158341|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158341|-1.2138200|-0.2940240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324886|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158341|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158341|-1.2138200|-0.2940240	chr21	 20187463	 20187874	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012949	0.87215143	A	0.8764776	A	0.99700581898971	0	lncRNA	ENST00000514186	NA	NA	NA	NA	XLOC_l2_011728	NA	ENST00000514186	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011728), lincRNA [TCONS_l2_00023514]"	chr5:116881934-116881993	hs|5q23.1	Agilent_HUMAN_G3V2	ENST00000514186	ENST00000514186	chr5	116881934	116881993	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004409	2.6145542	A	3.316533	P	0.614728466823756	0	lncRNA	TCONS_00010371	NA	NA	NA	NA	XLOC_004875	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004875), lincRNA [TCONS_00010371]"	chr5:71957565-71957506	hs|5q13.2	Agilent_HUMAN_G3V2	TCONS_00010371	TCONS_00010371	chr5	 71957506	 71957565	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11931_PI429285431	0.8867488	A	0.888106	A	0.999059703003085	0	lncRNA	13511-1_{1..348}	lnc-SLC15A4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC15A4-1:1	chr12	128675857	128676204	-	lnc-SLC15A4-1	lnc-SLC15A4-1:1	XLOC_010258	linc-DHX37-12	NA	NA	NA	inter
CUST_5348_PI429285431	0.883368	A	0.8877634	A	0.996957977238795	0	lncRNA	5286-1_{1..389}	"transcript_id ""ENST00000560242.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560242.1"" | genecode_v17"	chr15	 96936403	 96936791	-	ENSG00000259542.1	ENST00000560242.1	RP11-522B15.4	RP11-522B15.4-001	NA	NA	NA	inter
LNCA_21_P0001262	0.86839795	A	0.8698108	A	0.999021166376419	0	lncRNA	TCONS_00000839	NA	NA	NA	NA	XLOC_000052	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000052), lincRNA [TCONS_00000839]"	chr1:11438245-11438304	hs|1p36.22	Agilent_HUMAN_G3V2	TCONS_00000839	TCONS_00000839	chr1	 11438245	 11438304	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15383_PI429285431	4.8547206	P	4.242734	P	1.52836232500675	0	lncRNA	17066-1_{1..612}	lnc-MUC21-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MUC21-1:1	chr6	 31002449	 31003060	+	lnc-MUC21-1	lnc-MUC21-1:1	XLOC_005242	linc-PSORS1C1-2	PBMUCL1	NA	chr6:30992449-31003179	inner
CUST_20654_PI429285431	0.8893406	A	0.90294594	A	0.990613824678703	0	lncRNA	22293-1_{1..547}	lnc-TSPAN12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSPAN12-1:1	chr7	120392378	120392924	-	lnc-TSPAN12-1	lnc-TSPAN12-1:1	ENSG00000231295.1	RP4-797C5.2	KCND2	NA	chr7:120382378-120390387	inter
CUST_35078_PI429285431	0.9008513	A	0.90217865	A	0.99908037420511	0	lncRNA	36487-2_{3001..6000}	n342039|BX648958|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4520|NULL|-0.6279620|-0.2340920	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342039|BX648958|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4520|NULL|-0.6279620|-0.2340920	chr12	117893858	117896857	-	NA	NA	NA	NA	KSR2	NA	chr12:117890817-117906866	inner
CUST_14926_PI429285431	15.33051	P	15.61735	P	0.81969550973778	0	lncRNA	16588-1_{1..1242}	lnc-SLC25A30-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A30-2:3	chr13	 45957350	 45958591	-	lnc-SLC25A30-2	lnc-SLC25A30-2:3	XLOC_010592	linc-TPT1-2	NA	NA	NA	inter
CUST_17632_PI429285431	2.2020884	A	1.2272557	A	1.96541326762774	0	lncRNA	19359-1_{1..468}	lnc-SETBP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SETBP1-1:1	chr18	 42238472	 42238939	+	lnc-SETBP1-1	lnc-SETBP1-1:1	XLOC_012666	linc-SETBP1	NA	NA	NA	inter
CUST_34657_PI429285431	0.901152	A	0.90393674	A	0.998071627025331	0	lncRNA	36109-2_{3001..3487}	n341557|BC040572|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4028|NULL|-1.2286200|-0.3503252	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341557|BC040572|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4028|NULL|-1.2286200|-0.3503252	chr8	 91661668	 91662154	+	NA	NA	NA	NA	TMEM64	NA	chr8:91648668-91658133	inter
CUST_32720_PI429285431	10.969517	P	11.156216	P	0.878613760720836	0	lncRNA	34362-2_{3001..4226}	n339350|D83782|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1782|NULL|17.4385000|-0.1270985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339350|D83782|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1782|NULL|17.4385000|-0.1270985	chr3	 47458202	 47459427	-	NA	NA	NA	NA	PTPN23	NA	chr3:47445202-47454931	inner
CUST_52_PI429285431	2.8183346	A	2.1849282	A	1.55122332302937	0	lncRNA	51-1_{1..1031}	"transcript_id ""ENST00000400540.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000400540.1"" | genecode_v17"	chr13	 30510042	 30511072	+	ENSG00000122043.6	ENST00000400540.1	LINC00544	LINC00544-001	NA	NA	NA	inter
CUST_32762_PI429285431	1.9399664	A	1.3319298	A	1.52418349714516	0	lncRNA	34399-1_{1..1702}	n339400|AK021633|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1832|NULL|-1.2666000|-0.2765594	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339400|AK021633|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1832|NULL|-1.2666000|-0.2765594	chr3	 73446202	 73447903	-	NA	NA	NA	NA	PDZRN3	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr3:73436202-73457965"	NA	inner
CUST_43116_PI429285431	6.3673806	P	6.1344476	P	1.17522174884242	0	lncRNA	47931-1_{1..2568}	ENST00000590979 havana:3prime_overlapping_ncrna chromosome:GRCh37:17:40127182:40129749:1 gene:ENSG00000267548 gene_biotype:3prime_overlapping_ncrna transcript_biotype:3prime_overlapping_ncrna	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000590979 havana:3prime_overlapping_ncrna chromosome:GRCh37:17:40127182:40129749:1 gene:ENSG00000267548 gene_biotype:3prime_overlapping_ncrna transcript_biotype:3prime_overlapping_ncrna	chr17	 40127182	 40129749	+	ENSG00000267548	ENST00000590979	NA	NA	TTC25	"hg19_refFlat_DNAJC7:range=chr17:40128751-401694345'pad=0,hg19_refFlat_DNAJC7:range=chr17:40128751-401694345'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_DNAJC7:range=chr17:40128751-401492555'pad=0,hg19_refFlat_DNAJC7:range=chr17:40128751-401492555'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80chr17:40117182-40117669"	NA	inter
LNCA_21_P0001029	8.576475	P	8.069958	P	1.42061635528311	0	lncRNA	ENST00000483518	NA	NA	NA	NA	XLOC_000462	NA	ENST00000483518	NA	NA	"BROAD Institute lincRNA (XLOC_000462), lincRNA [TCONS_00000333]"	chr1:171595603-171595662	hs|1q24.3	Agilent_HUMAN_G3V2	ENST00000483518	ENST00000483518	chr1	171595603	171595662	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22008_PI429285431	3.0389264	P	2.581709	A	1.37289129692827	0	lncRNA	23617-1_{1..562}	lnc-STAG1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STAG1-2:1	chr3	136700905	136701466	-	lnc-STAG1-2	lnc-STAG1-2:1	ENSG00000249407.1	IL20RB-AS1	IL20RB	"hg19_refFlat_IL20RB:range=chr3:136676956-1367290655'pad=0,hg19_refFlat_IL20RB:range=chr3:136676956-1367290655'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40chr3:136690905-136711038"	NA	inner
CUST_43948_PI429285431	2.752453	A	0.9284266	A	3.54067984892889	0	lncRNA	48658-1_{1..2184}	"gi|402513683|ref|NR_073133.1| Homo sapiens primary ciliary dyskinesia protein 1 (PCDP1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402513683|ref|NR_073133.1| Homo sapiens primary ciliary dyskinesia protein 1 (PCDP1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_073133.1	NA	NA	NA	NA	NA	Unknown
CUST_30542_PI429285431	3.9706619	P	3.420956	A	1.46378726578171	0	lncRNA	32322-1_{1..370}	n335712|CR623830|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000303025|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000303025|-1.0906500|-0.2086238	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335712|CR623830|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000303025|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000303025|-1.0906500|-0.2086238	chr15	 65620722	 65621091	-	NA	NA	NA	NA	IGDCC3	NA	chr15:65619465-65631092	inner
CUST_27402_PI429285431	0.9183401	A	0.94591403	A	0.981068699461691	0	lncRNA	28966-1_{1..742}	n324567|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039994|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039994|-1.1810600|-0.3107120	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324567|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039994|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039994|-1.1810600|-0.3107120	chr6	 22697344	 22698085	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7347_PI429285431	2.4006362	A	0.96031284	A	2.71381685098339	0	lncRNA	8994-1_{1..1646}	lnc-GPR119-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR119-1:1	chrX	129658025	129659670	-	lnc-GPR119-1	lnc-GPR119-1:1	ENSG00000229702	RP1-274L7.1	NA	"hg19_refFlat_FAM45A:range=chr10:120863655-1208961595'pad=0,hg19_refFlat_FAM45A:range=chr10:120863655-1208961595'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20"	NA	inter
CUST_30514_PI429285431	11.418802	P	12.292838	P	0.545618323380706	0	lncRNA	32294-1_{1..566}	n335671|CR614667|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000293862|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000293862|2.3233600|-0.1724060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335671|CR614667|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000293862|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000293862|2.3233600|-0.1724060	chr6	 26055934	 26056499	-	NA	NA	NA	NA	HIST1H1C	NA	chr6:26055968-26056699	inner
CUST_50435_PI429285431	13.607977	P	13.853301	P	0.843626313520827	0	lncRNA	54139-1_{1..635}	hg19_lincRNAsTranscripts_TCONS_l2_00030186 range=chrX:44600286-44601039 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030186 range=chrX:44600286-44601039 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 44600286	 44600920	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39695_PI429285431	0.9227056	A	1.3052387	A	0.767089543179651	0	lncRNA	40634-2_{3001..3776}	n405477|NR_002319|lncRNA|Homosapiens||RefGeneNoncode|NR_002319||10.1631000|-0.1346510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405477|NR_002319|lncRNA|Homosapiens||RefGeneNoncode|NR_002319||10.1631000|-0.1346510	chr10	 95720896	 95721671	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25202_PI429285431	4.6741886	P	4.887639	P	0.862472044350299	0	lncRNA	26733-1_{1..1034}	lnc-SRPK2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRPK2-4:1	chr7	104444403	104445436	-	lnc-SRPK2-4	lnc-SRPK2-4:1	ENSG00000226869.2	RP11-203P23.1	LHFPL3	NA	chr7:104434403-104454554	inner
CUST_8184_PI429285431	0.8969675	A	0.9160389	A	0.986867703895189	0	lncRNA	9783-1_{1..2094}	lnc-STOM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-STOM-1:1	chr9	124057409	124059502	-	lnc-STOM-1	lnc-STOM-1:1	ENSG00000248233	AL513122.1	LOC100128064	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.11;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0,hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30chr9:124047409-124049119"	NA	inner
CUST_6196_PI429285431	0.8868873	A	0.8927429	A	0.995949433135666	0	lncRNA	6122-1_{1..450}	"transcript_id ""ENST00000585684.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585684.1"" | genecode_v17"	chr18	 53709366	 53709815	+	ENSG00000267057.1	ENST00000585684.1	RP11-456O19.2	RP11-456O19.2-006	NA	NA	NA	inter
CUST_33623_PI429285431	4.937176	P	5.0774794	P	0.907328323330017	0	lncRNA	35188-1_{1..1711}	n340383|L23852|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2844|NULL|1.9304300|-0.2797193	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340383|L23852|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2844|NULL|1.9304300|-0.2797193	chr5	 10541565	 10543275	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29719_PI429285431	1.1125724	A	0.91201806	A	1.14913981475091	0	lncRNA	31481-1_{1..833}	n333389|BC006010|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086581|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086581|3.9015500|-0.3288248	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333389|BC006010|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086581|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086581|3.9015500|-0.3288248	chr7	150211957	150212789	+	NA	NA	NA	NA	GIMAP7	NA	chr7:150209062-150218161	inner
CUST_13129_PI429285431	5.698329	P	5.546529	P	1.1109547069548	0	lncRNA	14757-1_{1..781}	lnc-AF127577.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AF127577.1-4:1	chr21	 16318876	 16319656	+	lnc-AF127577.1-4	lnc-AF127577.1-4:1	XLOC_013864	linc-USP25-2	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.01;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60"	NA	inter
LNCA_19_P00316719	0.8816916	A	1.288072	A	0.754514012914941	0	lncRNA	ENST00000451392	NA	NA	NA	NA	XLOC_l2_008434	NA	ENST00000451392	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008434), lincRNA [TCONS_l2_00016083]"	chr2:216696308-216696249	hs|2q35	Agilent_HUMAN_G3V2	ENST00000451392	ENST00000451392	chr2	216696249	216696308	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32761_PI429285431	0.9026941	A	0.9005939	A	1.00145680782367	0	lncRNA	34398-1_{1..2985}	n339399|BX648121|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1831|NULL|-1.0068200|-0.2439979	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339399|BX648121|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1831|NULL|-1.0068200|-0.2439979	chr3	 72370205	 72373189	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003628	2.2415593	A	3.0427768	P	0.573864684845941	0	lncRNA	TCONS_00008153	NA	NA	NA	NA	XLOC_003601	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003601), lincRNA [TCONS_00008153]"	chr4:88198891-88199830	hs|4q22.1	Agilent_HUMAN_G3V2	TCONS_00008153	TCONS_00008153	chr4	 88198891	 88199830	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13169_PI429285431	5.6280303	P	5.5713024	P	1.04010407882998	0	lncRNA	14798-1_{1..1085}	lnc-TAF12-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TAF12-3:1	chr1	 29203533	 29204617	-	lnc-TAF12-3	lnc-TAF12-3:1	XLOC_000762	linc-TAF12-2	EPB41	"hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20chr1:29213603-29213848"	NA	inter
CUST_2372_PI429285431	2.4754398	A	1.7210333	A	1.68693747234736	0	lncRNA	2365-1_{1..377}	"transcript_id ""ENST00000506592.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506592.1"" | genecode_v17"	chr5	135148356	135148732	+	ENSG00000250378.1	ENST00000506592.1	RP11-119J18.1	RP11-119J18.1-001	SLC25A48	NA	chr5:135170365-135172271	inter
CUST_24205_PI429285431	4.101412	P	4.3753	P	0.827087574814086	0	lncRNA	25756-1_{1..716}	lnc-TCTN3-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCTN3-1:7	chr10	 97849739	 97850454	-	lnc-TCTN3-1	lnc-TCTN3-1:7	ENSG00000226688.1	RP11-429G19.2	NA	NA	NA	inter
CUST_42516_PI429285431	0.90135115	A	0.9064026	A	0.996504724421733	0	lncRNA	45302-1_{1..121}	ENST00000384772 ncrna:snoRNA chromosome:GRCh37:21:42911133:42911253:1 gene:ENSG00000207503 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384772 ncrna:snoRNA chromosome:GRCh37:21:42911133:42911253:1 gene:ENSG00000207503 gene_biotype:snoRNA transcript_biotype:snoRNA	chr21	 42911133	 42911253	+	ENSG00000207503	ENST00000384772	NA	NA	NA	NA	NA	inter
CUST_39589_PI429285431	3.098419	A	3.0028994	A	1.0684501509911	0	lncRNA	40532-1_{1..1863}	n387591|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jdw.1||-1.0769300|-0.2938484	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387591|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jdw.1||-1.0769300|-0.2938484	chr6	  1198411	  1200273	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48406_PI429285431	0.886205	A	0.8826496	A	1.00246745465368	0	lncRNA	52259-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00000554 range=chr1:142840927-142861553 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000554 range=chr1:142840927-142861553 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	142840927	142843926	+	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30"	NA	inter
CUST_22227_PI429285431	1.1567346	A	1.1121297	A	1.0314006787021	0	lncRNA	23827-1_{1..544}	lnc-SLC38A8-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC38A8-4:3	chr16	 83806414	 83806957	-	lnc-SLC38A8-4	lnc-SLC38A8-4:3	ENSG00000260788.1	RP11-298D21.1	CDH13	NA	chr16:83796414-83816488	inner
CUST_46430_PI429285431	1.007468	A	0.91198903	A	1.06842006111269	0	lncRNA	50641-1_{1..876}	"gi|226423879|ref|NR_027470.1| Homo sapiens unc-51-like kinase 4 (C. elegans) pseudogene 2 (ULK4P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226423879|ref|NR_027470.1| Homo sapiens unc-51-like kinase 4 (C. elegans) pseudogene 2 (ULK4P2), non-coding RNA"	Chr15	 30864758	 30865633	+	100288380	NR_027470.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20"	NA	inter
CUST_38755_PI429285431	1.4037504	A	0.8749461	A	1.4427329684426	0	lncRNA	39746-1_{1..2836}	n384321|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003emd.1||0.4138360|-0.2470358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384321|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003emd.1||0.4138360|-0.2470358	chr3	129109997	129112832	-	NA	NA	NA	NA	C3orf25	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00chr3:129120164-129128282"	NA	inter
CUST_31567_PI429285431	7.573029	P	7.6106734	P	0.974244373760928	0	lncRNA	33324-1_{1..2129}	n338061|CR600510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|448|NULL|-0.6927120|-0.1337552	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338061|CR600510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|448|NULL|-0.6927120|-0.1337552	chr15	 78911120	 78913248	+	NA	NA	NA	NA	CHRNA3	"hg19_refFlat_CHRNA3:range=chr15:78885453-789131365'pad=0,hg19_refFlat_CHRNA3:range=chr15:78885453-789131365'pad=0 3'pad=0 strand=- repeatMasking=none,-106.10;hg19_refFlat_CHRNA3:range=chr15:78888946-789131365'pad=0,hg19_refFlat_CHRNA3:range=chr15:78888946-789131365'pad=0 3'pad=0 strand=- repeatMasking=none,-106.10chr15:78901120-78913637"	NA	inner
CUST_10322_PI429285431	0.897873	A	0.8881418	A	1.00676795362751	0	lncRNA	11850-1_{1..2619}	lnc-TTC40-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC40-2:1	chr10	134778825	134781443	-	lnc-TTC40-2	lnc-TTC40-2:1	XLOC_009005	linc-C10orf93-3	NA	NA	NA	inter
CUST_20686_PI429285431	3.6312668	A	3.489708	P	1.10309634335118	0	lncRNA	22322-1_{1..493}	lnc-RP11-770G2.3.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-770G2.3.1-1:3	chr11	 65557241	 65557733	-	lnc-RP11-770G2.3.1-1	lnc-RP11-770G2.3.1-1:3	ENSG00000255120.1	RP11-770G2.4	OVOL1	NA	chr11:65554529-65564685	inner
CUST_38948_PI429285431	5.5973363	P	4.83358	P	1.697905658499	0	lncRNA	39935-1_{1..1166}	n385120|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tda.1||0.9822200|-0.3190843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385120|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tda.1||0.9822200|-0.3190843	chr7	 32865913	 32867078	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44392_PI429285431	1.946795	A	1.3847263	A	1.47638470828433	0	lncRNA	49010-2_{3001..4300}	"gi|334085197|ref|NR_038303.1| Homo sapiens uncharacterized LOC100505702 (LOC100505702), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|334085197|ref|NR_038303.1| Homo sapiens uncharacterized LOC100505702 (LOC100505702), transcript variant 1, non-coding RNA"	Chr4	 79570148	 79571447	+	100505702	NR_038303.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10"	NA	inter
CUST_25894_PI429285431	1.7933576	A	0.874998	A	1.88996510791435	0	lncRNA	27413-1_{1..527}	lnc-DYDC1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DYDC1-4:4	chr10	 83988683	 83989209	-	lnc-DYDC1-4	lnc-DYDC1-4:4	ENSG00000229458.2	RP11-202D18.2	NRG3	NA	chr10:83978683-83998935	inner
CUST_14356_PI429285431	0.8922126	A	0.90080106	A	0.994064617558489	0	lncRNA	16014-1_{1..846}	lnc-TSN-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSN-7:1	chr2	123262538	123263383	+	lnc-TSN-7	lnc-TSN-7:1	XLOC_001650	linc-CNTNAP5-6	NA	NA	NA	inter
CUST_31932_PI429285431	4.003804	P	4.842647	P	0.55909176483471	0	lncRNA	33660-1_{1..804}	n338487|BC043653|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|884|NULL|-1.1191600|-0.1572608	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338487|BC043653|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|884|NULL|-1.1191600|-0.1572608	chr1	205601043	205601846	+	NA	NA	NA	NA	ELK4	NA	chr1:205591043-205602000	inner
LNCA_21_P0011491	16.862755	P	16.727428	P	1.09834173475577	0	lncRNA	TCONS_l2_00010291	NA	NA	NA	NA	XLOC_l2_005557	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005557), lincRNA [TCONS_l2_00010291]"	chr16:76268977-76268918	hs|16q23.1	Agilent_HUMAN_G3V2	TCONS_l2_00010291	TCONS_l2_00010291	chr16	 76268918	 76268977	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002764	0.87562054	A	0.87629676	A	0.999531389845614	0	lncRNA	ENST00000497854	NA	NA	NA	NA	XLOC_002767	NA	ENST00000497854	NA	NA	"BROAD Institute lincRNA (XLOC_002767), lincRNA [TCONS_00005574]"	chr3:116287040-116287099	hs|3q13.31	Agilent_HUMAN_G3V2	ENST00000497854	ENST00000497854	chr3	116287040	116287099	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40786_PI429285431	1.2604396	A	1.4827641	A	0.857183211935241	0	lncRNA	41499-1_{1..3000}	n410541|NR_037705|lncRNA|Homosapiens||RefGeneNoncode|NR_037705||7.8361200|-0.2412502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410541|NR_037705|lncRNA|Homosapiens||RefGeneNoncode|NR_037705||7.8361200|-0.2412502	chr16	 89284110	 89287109	+	NA	NA	NA	NA	ZNF778	NA	chr16:89284111-89295965	inter
CUST_18783_PI429285431	1.2726016	A	1.6294826	A	0.780850898058341	0	lncRNA	20479-1_{1..712}	lnc-NRG1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NRG1-2:1	chr8	 32901885	 32902596	+	lnc-NRG1-2	lnc-NRG1-2:1	ENSG00000247134	RP11-11N9.4	NA	NA	NA	inter
CUST_367_PI429285431	1.4779258	A	0.8828551	A	1.51054660884943	0	lncRNA	359-1_{1..1396}	"transcript_id ""ENST00000438885.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438885.1"" | genecode_v17"	chr1	116461997	116463392	+	ENSG00000228127.1	ENST00000438885.1	RP11-12L8.1	RP11-12L8.1-001	NA	NA	NA	inter
CUST_41615_PI429285431	3.0733113	P	4.0151906	P	0.520554348088293	0	lncRNA	42986-1_{1..97}	ENST00000385220 ncrna:miRNA chromosome:GRCh37:9:131154897:131154993:-1 gene:ENSG00000207955 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385220 ncrna:miRNA chromosome:GRCh37:9:131154897:131154993:-1 gene:ENSG00000207955 gene_biotype:miRNA transcript_biotype:miRNA	chr9	131154897	131154993	-	ENSG00000207955	ENST00000385220	NA	NA	URM1	NA	chr9:131144897-131153015	inter
CUST_48676_PI429285431	0.89124155	A	0.91235495	A	0.985471872957465	0	lncRNA	52519-1_{1..409}	hg19_lincRNAsTranscripts_TCONS_l2_00013846 range=chr2:98305422-98317918 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013846 range=chr2:98305422-98317918 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 98305422	 98305830	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11074_PI429285431	0.8743361	A	0.87798274	A	0.9974755336037	0	lncRNA	12626-1_{1..886}	lnc-SH3D19-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SH3D19-1:3	chr4	152328335	152329220	-	lnc-SH3D19-1	lnc-SH3D19-1:3	XLOC_004122	linc-SH3D19	FAM160A1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chr4:152330398-152339162"	NA	inter
CUST_1208_PI429285431	3.8058574	A	2.4571874	A	2.54677233896078	0	lncRNA	1199-1_{1..853}	"transcript_id ""ENST00000419243.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419243.1"" | genecode_v17"	chr2	200472791	200473643	+	ENSG00000238217.1	ENST00000419243.1	AC093590.1	AC093590.1-002	NA	NA	NA	inter
CUST_45317_PI429285431	0.8838678	A	0.88857746	A	0.996740835095608	0	lncRNA	49759-1_{1..1013}	"gi|300116302|ref|NR_033991.1| Homo sapiens uncharacterized LOC100129250 (LOC100129250), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300116302|ref|NR_033991.1| Homo sapiens uncharacterized LOC100129250 (LOC100129250), non-coding RNA"	Chr9	 32551142	 32552154	+	100129250	NR_033991.1	NA	NA	NA	NA	NA	inter
CUST_38230_PI429285431	4.1298385	P	2.8306806	A	2.4608520099464	0	lncRNA	39292-2_{3001..3673}	n381629|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001mwq.1||0.0767351|-0.2972645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381629|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001mwq.1||0.0767351|-0.2972645	chr11	 36508322	 36508994	-	NA	NA	NA	NA	TRAF6	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.34;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70chr11:36505317-36518995"	NA	inner
CUST_39487_PI429285431	2.9357078	A	3.032427	A	0.935157195041026	0	lncRNA	40434-1_{1..1253}	n387179|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010zpe.1||1.7185400|-0.2442900	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n387179|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010zpe.1||1.7185400|-0.2442900	chr2	243030843	243032095	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00322859	0.8753803	A	1.3281041	A	0.730662059126389	0	lncRNA	ENST00000532886	NA	NA	NA	NA	XLOC_009344	NA	ENST00000532886	THC2657201	NA	"BROAD Institute lincRNA (XLOC_009344), lincRNA [TCONS_00019549]"	chr11:134372910-134372969	hs|11q25	Agilent_HUMAN_G3V2	ENST00000532886	ENST00000532886	chr11	134372910	134372969	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44595_PI429285431	9.265038	P	8.834235	P	1.34798365200894	0	lncRNA	49172-1_{1..822}	"gi|345842500|ref|NR_045116.1| Homo sapiens chromosome 5 open reading frame 56 (C5orf56), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|345842500|ref|NR_045116.1| Homo sapiens chromosome 5 open reading frame 56 (C5orf56), non-coding RNA"	Chr5	131746465	131747286	+	441108	NR_045116.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004717	5.6640825	P	5.984533	P	0.800819772314091	0	lncRNA	ENST00000455327	NA	NA	NA	NA	XLOC_005582	NA	ENST00000455327	NA	NA	"BROAD Institute lincRNA (XLOC_005582), lincRNA [TCONS_00011431]"	chr6:3051394-3051335	hs|6p25.2	Agilent_HUMAN_G3V2	ENST00000455327	ENST00000455327	chr6	  3051335	  3051394	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1547_PI429285431	0.90327746	A	0.89518213	A	1.00562702774499	0	lncRNA	1534-1_{1..629}	"transcript_id ""ENST00000490897.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000490897.1"" | genecode_v17"	chr3	167613755	167614383	+	ENSG00000244227.1	ENST00000490897.1	RP11-298O21.5	RP11-298O21.5-003	NA	NA	NA	inter
CUST_366_PI429201921	0.9171297	A	2.1414447	A	0.428000681818706	0	lncRNA	234-1_{1..3000}	TC16001513.hg.1	TCONS_l2_00009694-XLOC_l2_005191 // Broad TUCP // linc-TP53TG3B-15 chr16:+:32941724-32950672 // chr16 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr16:+:32941724-32950672	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00009694-XLOC_l2_005191	linc-TP53TG3B-15	chr16	 32941724	 32950672	+	NA	NA	NA	NA	DAB1	NA	chr1:58515811-58555946	Unknown
LNCA_21_P0001853	0.8719555	A	0.876225	A	0.997044982796239	0	lncRNA	ENST00000431712	NA	NA	NA	NA	XLOC_001431	NA	ENST00000431712	NA	NA	"BROAD Institute lincRNA (XLOC_001431), lincRNA [TCONS_00002873]"	chr2:37971614-37971673	hs|2p22.2	Agilent_HUMAN_G3V2	ENST00000431712	ENST00000431712	chr2	 37971614	 37971673	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31460_PI429285431	2.375113	A	2.6487708	A	0.82721955748896	0	lncRNA	33227-1_{1..210}	n337935|L42347|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|320|NULL|-0.8831430|-0.1122564	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337935|L42347|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|320|NULL|-0.8831430|-0.1122564	chr22	 19121447	 19121656	+	NA	NA	NA	NA	TSSK2	NA	chr22:19118321-19120136	inner
LNCA_21_P0007469	2.044945	A	1.858258	A	1.13814707551132	0	lncRNA	ENST00000526934	NA	NA	NA	NA	XLOC_009578	NA	ENST00000526934	THC2649495	NA	"BROAD Institute lincRNA (XLOC_009578), lincRNA [TCONS_00020140]"	chr11:119859436-119859377	hs|11q23.3	Agilent_HUMAN_G3V2	ENST00000526934	ENST00000526934	chr11	119859377	119859436	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44226_PI429285431	0.9212378	A	0.918884	A	1.00163286150252	0	lncRNA	48875-1_{1..2325}	"gi|378744159|ref|NR_046383.1| Homo sapiens ALDH1L1 antisense RNA 2 (ALDH1L1-AS2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|378744159|ref|NR_046383.1| Homo sapiens ALDH1L1 antisense RNA 2 (ALDH1L1-AS2), non-coding RNA"	Chr3	125898908	125901232	+	100862662	NR_046383.1	NA	NA	NA	NA	NA	inter
CUST_14922_PI429285431	5.000555	P	4.968121	P	1.02273614983625	0	lncRNA	16584-1_{1..658}	lnc-CDK9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK9-1:2	chr9	130547038	130547695	+	lnc-CDK9-1	lnc-CDK9-1:2	XLOC_007573	linc-CDK9-1	SH2D3C	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50chr9:130537038-130541048"	NA	inter
CUST_20158_PI429285431	2.3019426	A	1.8825254	A	1.33738718645954	0	lncRNA	21803-1_{1..898}	lnc-FAM54A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM54A-2:2	chr6	136385519	136386416	-	lnc-FAM54A-2	lnc-FAM54A-2:2	ENSG00000227844.1	RP13-143G15.3	PDE7B	NA	chr6:136375519-136395776	inner
LNCA_21_P0006334	8.096705	P	7.868542	P	1.17134251552313	0	lncRNA	TCONS_00016511	NA	NA	NA	NA	XLOC_007895	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007895), lincRNA [TCONS_00016511]"	chr9:139166885-139166826	hs|9q34.3	Agilent_HUMAN_G3V2	TCONS_00016511	TCONS_00016511	chr9	139166826	139166885	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47621_PI429285431	0.90331024	A	0.917874	A	0.989955952584354	0	lncRNA	51613-1_{1..2870}	"gi|371940888|ref|NR_045863.1| Homo sapiens armadillo repeat containing, X-linked 4 (ARMCX4), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|371940888|ref|NR_045863.1| Homo sapiens armadillo repeat containing, X-linked 4 (ARMCX4), transcript variant 6, non-coding RNA"	NW_004070883.1	   166929	   169798	+	100131755	NR_045863.1	NA	NA	NA	NA	NA	Unknown
CUST_24965_PI429285431	4.4078445	P	4.700519	P	0.816387218173998	0	lncRNA	26503-1_{1..552}	lnc-EXTL3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-EXTL3-5:1	chr8	 28913689	 28914240	+	lnc-EXTL3-5	lnc-EXTL3-5:1	ENSG00000259366.1	CTD-2647L4.4	HMBOX1	NA	chr8:28903689-28910242	inter
LNCA_21_P0007892	9.248454	P	8.837066	P	1.32996474227711	0	lncRNA	AL833501	NA	AL833501	NA	Hs.506815	TMEM116	transmembrane protein 116	NA	THC2497309	GO:0008150|GO:0003674|GO:0016020|GO:0016021|GO:0005575	"BROAD Institute lincRNA (XLOC_010203), lincRNA [TCONS_00021409]"	chr12:112332702-112332643	hs|12q24.13	Agilent_HUMAN_G3V2	AL833501	AL833501	chr12	112332643	112332702	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2885_PI429285431	0.8945144	A	0.92171127	A	0.981325143199671	0	lncRNA	2866-1_{1..489}	"transcript_id ""ENST00000418395.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418395.1"" | genecode_v17"	chr7	 90941755	 90942243	+	ENSG00000243144.2	ENST00000418395.1	RP11-115N4.1	RP11-115N4.1-003	NA	NA	NA	inter
CUST_37989_PI429285431	2.1221848	A	0.9010805	A	2.33125092854787	0	lncRNA	39076-1_{1..3000}	n346544|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2094|NULL|-1.3597000|-0.2802701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346544|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2094|NULL|-1.3597000|-0.2802701	chr2	231808456	231811455	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003524	0.9034138	A	0.9254646	A	0.984831764510275	0	lncRNA	ENST00000515805	NA	NA	NA	NA	XLOC_004123	NA	ENST00000515805	NA	NA	"BROAD Institute lincRNA (XLOC_004123), lincRNA [TCONS_00007879]"	chr4:152808770-152808711	hs|4q31.3	Agilent_HUMAN_G3V2	ENST00000515805	ENST00000515805	chr4	152808711	152808770	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22885_PI429285431	4.2860904	P	4.1910543	P	1.06809213416983	0	lncRNA	24462-1_{1..813}	lnc-GS1-211B7.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GS1-211B7.1.1-1:1	chr8	 30620790	 30621602	+	lnc-GS1-211B7.1.1-1	lnc-GS1-211B7.1.1-1:1	ENSG00000104691.10	UBXN8	UBXN8	NA	chr8:30610790-30624522	inner
CUST_14728_PI429285431	1.5962007	A	0.9005148	A	1.61965428174603	0	lncRNA	16391-2_{3001..6000}	lnc-ZNF131-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF131-4:1	chr5	 42963426	 42966425	+	lnc-ZNF131-4	lnc-ZNF131-4:1	XLOC_004362	linc-ZNF131-5	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-56.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
LNCA_21_P0014792	6.2357273	P	6.2323027	P	1.00237657141398	0	lncRNA	XR_132588	XR_132588	XR_132588	NA	NA	LOC100652878	uncharacterized LOC100652878	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652878 (LOC100652878), miscRNA [XR_132588]"	chr13:98674211-98674152	hs|13q32.2	Agilent_HUMAN_G3V2	XR_132588	XR_132588	chr13	 98674152	 98674211	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1424_PI429285431	0.91653013	A	0.9220085	A	0.996209883970253	0	lncRNA	1413-1_{1..604}	"transcript_id ""ENST00000466155.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000466155.1"" | genecode_v17"	chr3	107572845	107573448	-	ENSG00000241469.2	ENST00000466155.1	LINC00635	LINC00635-007	NA	NA	NA	inter
CUST_34426_PI429285431	4.8817363	P	4.903573	P	0.984977927158049	0	lncRNA	35906-1_{1..1216}	n341302|BC022431|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3771|NULL|1.5978400|-0.3500844	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341302|BC022431|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3771|NULL|1.5978400|-0.3500844	chr7	114719011	114720226	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7480_PI429285431	8.308572	P	8.675137	P	0.775627037399929	0	lncRNA	9121-1_{1..549}	lnc-RP11-849H4.2.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RP11-849H4.2.1-1:5	chr11	 71515576	 71516124	-	lnc-RP11-849H4.2.1-1	lnc-RP11-849H4.2.1-1:5	ENSG00000254978	ENST00000532875	FAM86C1	NA	chr11:71505576-71512280	inter
LNCA_21_P0006330	0.89614546	A	0.91452074	A	0.987343995898296	0	lncRNA	TCONS_00016496	NA	NA	NA	NA	XLOC_007875	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007875), lincRNA [TCONS_00016496]"	chr9:134224435-134222638	hs|9q34.13	Agilent_HUMAN_G3V2	TCONS_00016496	TCONS_00016496	chr9	134222638	134224435	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19222_PI429285431	0.88953876	A	0.96364754	A	0.949928755023654	0	lncRNA	20892-1_{1..910}	lnc-GCNT2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GCNT2-2:2	chr6	 10415520	 10416429	+	lnc-GCNT2-2	lnc-GCNT2-2:2	ENSG00000229950.1	RP1-290I10.6	TFAP2A	"hg19_refFlat_TFAP2A:range=chr6:10398650-104152185'pad=0,hg19_refFlat_TFAP2A:range=chr6:10398650-104152185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00chr6:10405520-10419797"	NA	inner
CUST_42151_PI429285431	1.7795544	A	3.22613	P	0.366891249177628	0	lncRNA	44180-1_{1..85}	ENST00000578722 ncrna:miRNA chromosome:GRCh37:17:47126902:47126986:1 gene:ENSG00000264552 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578722 ncrna:miRNA chromosome:GRCh37:17:47126902:47126986:1 gene:ENSG00000264552 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 47126902	 47126986	+	ENSG00000264552	ENST00000578722	NA	NA	IGF2BP1	NA	chr17:47116902-47133507	inner
CUST_23018_PI429285431	3.127077	P	2.729364	A	1.31741784746247	0	lncRNA	24590-1_{1..655}	lnc-PODXL-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PODXL-1:4	chr7	131012374	131013028	-	lnc-PODXL-1	lnc-PODXL-1:4	ENSG00000236753.1	AC018642.1	MKLN1	NA	chr7:131002374-131022489	inner
CUST_5113_PI429285431	4.558041	P	4.8445983	P	0.819856147030745	0	lncRNA	5053-1_{1..427}	"transcript_id ""ENST00000546615.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546615.1"" | genecode_v17"	chr15	 25272883	 25273309	-	ENSG00000257647.1	ENST00000546615.1	RP11-701H24.3	RP11-701H24.3-001	SNRPN	NA	chr15:25262883-25287194	inter
LNCA_21_P0009576	3.1107993	P	2.476282	A	1.55241825167238	0	lncRNA	TCONS_00026558	NA	NA	NA	NA	XLOC_012879	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012879), lincRNA [TCONS_00026558]"	chr18:71314891-71314832	hs|18q22.3	Agilent_HUMAN_G3V2	TCONS_00026558	TCONS_00026558	chr18	 71314832	 71314891	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011074	4.150029	P	4.631907	P	0.716044919631501	0	lncRNA	TCONS_l2_00006048	NA	NA	NA	NA	XLOC_l2_003253	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003253), lincRNA [TCONS_l2_00006048]"	chr12:2835715-2835656	hs|12p13.33	Agilent_HUMAN_G3V2	TCONS_l2_00006048	TCONS_l2_00006048	chr12	  2835656	  2835715	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_612_PI429285431	0.87693256	A	0.8842468	A	0.994942985138235	0	lncRNA	604-1_{1..846}	"transcript_id ""ENST00000549744.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000549744.1"" | genecode_v17"	chr1	235115394	235116239	-	ENSG00000258082.1	ENST00000549744.1	RP11-443B7.3	RP11-443B7.3-001	NA	NA	NA	inter
CUST_47728_PI429285431	1.3987777	A	2.1229134	A	0.605359599129571	0	lncRNA	51683-2_{3001..5889}	"gi|385137068|ref|NR_047606.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 36, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137068|ref|NR_047606.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 36, non-coding RNA"	ChrY	 15363259	 15366147	-	7404	NR_047606.1	NA	NA	NA	NA	NA	inter
CUST_45120_PI429285431	6.245055	P	5.839992	P	1.32414673233307	0	lncRNA	49601-1_{1..2299}	"gi|223634015|ref|NR_026865.1| Homo sapiens chromosome 7 open reading frame 13 (C7orf13), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223634015|ref|NR_026865.1| Homo sapiens chromosome 7 open reading frame 13 (C7orf13), non-coding RNA"	Chr7	156431060	156433358	-	129790	NR_026865.1	NA	NA	NA	NA	NA	inter
CUST_28_PI429285431	2.3865821	A	1.9032006	A	1.39801660840606	0	lncRNA	27-1_{1..711}	"transcript_id ""ENST00000523862.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000523862.1"" | genecode_v17"	chr8	 97384093	 97384803	-	ENSG00000253105.1	ENST00000523862.1	KB-1448A5.1	KB-1448A5.1-002	NA	NA	NA	inter
CUST_28267_PI429285431	2.8329294	A	2.161725	A	1.59240179192141	0	lncRNA	29902-1_{1..750}	n325561|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000253268|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000253268|-0.9521300|-0.3436555	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325561|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000253268|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000253268|-0.9521300|-0.3436555	chr17	 20919460	 20920209	+	NA	NA	NA	NA	USP22	NA	chr17:20909460-20944520	inner
CUST_351_PI429201921	4.7041354	P	4.7016683	P	1.00171152640141	0	lncRNA	227-3_{6001..8385}	TC03002819.hg.1	 TCONS_l2_00019181-XLOC_l2_010118 // Broad TUCP // linc-XPC-1 chr3:-:14390736-14398336 // chr3 // 100 // 100 // 0 // --- // 0///TCONS_l2_00020086-XLOC_l2_010118 // Broad TUCP // linc-XPC-1 chr3:-:14389950-14394068 // chr3 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr3:-:14389950-14394068	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00020086-XLOC_l2_010118	linc-XPC-1	chr3	 14389950	 14394068	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36906_PI429285431	2.8761327	A	2.1722538	A	1.62887839214827	0	lncRNA	38066-1_{1..2778}	n345379|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_928|NULL|-1.6334700|-0.3266224	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345379|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_928|NULL|-1.6334700|-0.3266224	chr20	 30938706	 30941483	-	NA	NA	NA	NA	ASXL1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50chr20:30946147-30955410"	NA	inter
CUST_15371_PI429285431	1.0249066	A	0.8963943	A	1.09316585261716	0	lncRNA	17054-1_{1..240}	lnc-NAA16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAA16-1:1	chr13	 41873639	 41873878	+	lnc-NAA16-1	lnc-NAA16-1:1	XLOC_010360	linc-NAA16-1	NA	NA	NA	inter
LNCA_21_P0009450	7.835736	P	7.734825	P	1.07245045520238	0	lncRNA	TCONS_00026273	NA	NA	NA	NA	XLOC_012621	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012621), lincRNA [TCONS_00026273]"	chr18:7277350-7277409	hs|18p11.23	Agilent_HUMAN_G3V2	TCONS_00026273	TCONS_00026273	chr18	  7277350	  7277409	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17573_PI429285431	4.051836	P	3.7634897	P	1.22123962002368	0	lncRNA	19302-1_{1..3000}	lnc-NAP1L2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NAP1L2-1:5	chrX	 73061217	 73064216	-	lnc-NAP1L2-1	lnc-NAP1L2-1:5	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70"	NA	inter
CUST_6061_PI429285431	7.8140574	P	7.445781	P	1.29080976768978	0	lncRNA	5987-1_{1..1564}	"transcript_id ""ENST00000581471.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581471.1"" | genecode_v17"	chr18	  5237825	  5239388	+	ENSG00000263753.1	ENST00000581471.1	LINC00667	LINC00667-004	NA	NA	NA	inter
CUST_7877_PI429285431	1.421916	A	1.1241279	A	1.22925830313164	0	lncRNA	9498-1_{1..3000}	lnc-ZNF8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF8-2:1	chr19	 58811107	 58814106	+	lnc-ZNF8-2	lnc-ZNF8-2:1	ENSG00000244936	ENST00000501378	ZNF8	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90chr19:58801107-58807254"	NA	inter
CUST_51931_PI429285431	0.87385213	A	0.8752985	A	0.998997955095084	0	lncRNA	55472-1_{1..685}	hg19_lincRNAsTranscripts_TCONS_l2_00016458 range=chr20:5412637-5414793 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016458 range=chr20:5412637-5414793 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	  5412637	  5413321	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41977_PI429285431	0.9601222	A	0.87572604	A	1.0602438834158	0	lncRNA	43793-1_{1..99}	ENST00000362212 ncrna:miRNA chromosome:GRCh37:14:100575992:100576090:1 gene:ENSG00000199082 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362212 ncrna:miRNA chromosome:GRCh37:14:100575992:100576090:1 gene:ENSG00000199082 gene_biotype:miRNA transcript_biotype:miRNA	chr14	100575992	100576090	+	ENSG00000199082	ENST00000362212	NA	NA	EVL	NA	chr14:100565992-100586090	inner
CUST_31684_PI429285431	2.7379293	A	1.2498035	A	2.80524310197075	0	lncRNA	33431-1_{1..1373}	n338210|BC064338|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|602|NULL|-1.0134700|-0.3327595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338210|BC064338|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|602|NULL|-1.0134700|-0.3327595	chr1	120451877	120453249	-	NA	NA	NA	NA	NOTCH2	NA	chr1:120454176-120463236	inter
CUST_14783_PI429285431	1.5700126	A	1.9744039	A	0.755555008319095	0	lncRNA	16444-1_{1..2116}	lnc-NCOA3-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-NCOA3-5:4	chr20	 46524524	 46526639	+	lnc-NCOA3-5	lnc-NCOA3-5:4	XLOC_013543	linc-ARFGEF2-12	NA	NA	NA	inter
LNCA_21_P0014698	0.8738444	A	0.8754044	A	0.998919274802894	0	lncRNA	XR_111873	XR_111873	XR_111873	NA	NA	LOC100508287	uncharacterized LOC100508287	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100508287 (LOC100508287), miscRNA [XR_111873]"	chr19:44436112-44453926	hs|19q13.31	Agilent_HUMAN_G3V2	XR_111873	XR_111873	chr19	 44436112	 44453926	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40742_PI429285431	7.491811	P	7.428589	P	1.04479652239874	0	lncRNA	41472-1_{1..3000}	n410454|NR_037597|lncRNA|Homosapiens||RefGeneNoncode|NR_037597||2.9312300|-0.1977251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410454|NR_037597|lncRNA|Homosapiens||RefGeneNoncode|NR_037597||2.9312300|-0.1977251	chr2	 95534429	 95537428	-	NA	NA	NA	NA	TEKT4	NA	chr2:95537232-95542568	inter
CUST_31146_PI429285431	9.610391	P	9.386592	P	1.16780468171355	0	lncRNA	32941-1_{1..332}	n337475|EF100443|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394858|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394858|-1.3465900|-0.2586342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337475|EF100443|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394858|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394858|-1.3465900|-0.2586342	chr6	144263761	144264092	-	NA	NA	NA	NA	PLAGL1	NA	chr6:144261437-144385735	inner
CUST_37769_PI429285431	0.8738896	A	1.031852	A	0.896290058675867	0	lncRNA	38866-1_{1..3000}	n346277|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1827|NULL|-1.3289100|-0.2155177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346277|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1827|NULL|-1.3289100|-0.2155177	chr9	 99882332	 99885331	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-62.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FAM220A:range=chr7:6370006-63707855'pad=0,hg19_refFlat_FAM220A:range=chr7:6370006-63707855'pad=0 3'pad=0 strand=- repeatMasking=none,-97.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80"	NA	inter
LNCA_21_P0007460	0.8744244	A	1.2251065	A	0.784213237592849	0	lncRNA	ENST00000534757	NA	NA	NA	NA	XLOC_009399	NA	ENST00000534757	NA	NA	"BROAD Institute lincRNA (XLOC_009399), lincRNA [TCONS_00020054]"	chr11:27639632-27639573	hs|11p14.1	Agilent_HUMAN_G3V2	ENST00000534757	ENST00000534757	chr11	 27639573	 27639632	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4036_PI429285431	6.2598243	P	6.629349	P	0.774037463621315	0	lncRNA	3998-1_{1..658}	"transcript_id ""ENST00000528156.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000528156.1"" | genecode_v17"	chr11	 82783385	 82784042	+	ENSG00000246067.2	ENST00000528156.1	RP11-113K21.5	RP11-113K21.5-007	RAB30	NA	chr11:82773385-82782884	inter
LNCA_21_P0014865	0.8763523	A	0.878058	A	0.998818397496756	0	lncRNA	XR_132757	XR_132757	XR_132757	NA	Hs.630883	LOC100288160	esophagus cancer-related gene-2 interaction susceptibility protein	NA	THC2524938	NA	"PREDICTED: Homo sapiens esophagus cancer-related gene-2 interaction susceptibility protein (LOC100288160), miscRNA [XR_132757]"	chr14:101359556-101359615	hs|14q32.2	Agilent_HUMAN_G3V2	XR_132757	XR_132757	chr14	101359556	101359615	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34769_PI429285431	0.93525153	A	1.4415164	A	0.704042843622825	0	lncRNA	36209-1_{1..1014}	n341678|BC033987|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4149|NULL|-1.0947500|-0.2679277	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341678|BC033987|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4149|NULL|-1.0947500|-0.2679277	chr9	 34568009	 34569022	+	NA	NA	NA	NA	CNTFR	NA	chr9:34558009-34590138	inter
CUST_30035_PI429285431	5.2324915	P	5.639577	P	0.754145343285971	0	lncRNA	31804-1_{1..212}	n334512|U33838|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219360|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219360|0.4656710|-0.2273872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334512|U33838|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219360|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219360|0.4656710|-0.2273872	chr11	 65423178	 65423389	-	NA	NA	NA	NA	RELA	NA	chr11:65421067-65430443	inner
CUST_21513_PI429285431	1.0552776	A	1.6490937	A	0.66258796307273	0	lncRNA	23131-1_{1..783}	lnc-ANKRD20A3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ANKRD20A3-4:1	chr9	 43032798	 43033580	-	lnc-ANKRD20A3-4	lnc-ANKRD20A3-4:1	ENSG00000233244.2	RP11-399F4.4	ANKRD20A3	NA	chr9:43022798-43042877	inter
LNCA_21_P0006206	4.6424456	P	5.112668	P	0.72185331121308	0	lncRNA	TCONS_00016124	NA	NA	NA	NA	XLOC_007509	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007509), lincRNA [TCONS_00016124]"	chr9:110355789-110355848	hs|9q31.2	Agilent_HUMAN_G3V2	TCONS_00016124	TCONS_00016124	chr9	110355789	110355848	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003084	0.8978653	A	0.9224062	A	0.983133405288867	0	lncRNA	TCONS_00006357	NA	NA	NA	NA	XLOC_002976	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002976), lincRNA [TCONS_00006357]"	chr3:193921778-193921837	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00006357	TCONS_00006357	chr3	193921778	193921837	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19595_PI429285431	1.8257622	A	1.789062	A	1.02576496356123	0	lncRNA	21251-1_{1..501}	lnc-GLUD1-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLUD1-4:5	chr10	 89101999	 89102499	-	lnc-GLUD1-4	lnc-GLUD1-4:5	ENSG00000223482.1	RP11-322M19.1	NA	NA	NA	inter
CUST_33630_PI429285431	1.6883477	A	0.93282074	A	1.68824813058191	0	lncRNA	35195-1_{1..248}	n340392|AF056425|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2853|NULL|-1.0732800|-0.1991431	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340392|AF056425|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2853|NULL|-1.0732800|-0.1991431	chr5	 10744600	 10744847	+	NA	NA	NA	NA	DAP	NA	chr5:10734600-10754848	inner
LNCA_21_P0014350	7.5194855	P	6.6218653	P	1.86299034823969	0	lncRNA	XR_109394	XR_109394	XR_109394	NA	NA	LOC100506295	uncharacterized LOC100506295	NA	THC2653218	NA	"PREDICTED: Homo sapiens hypothetical LOC100506295, transcript variant 1 (LOC100506295), miscRNA [XR_109394]"	chr17:45968886-45968827	hs|17q21.32	Agilent_HUMAN_G3V2	XR_109394	XR_109394	chr17	 45968827	 45968886	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22419_PI429285431	1.4534307	A	0.9298773	A	1.43749147477801	0	lncRNA	24008-1_{1..568}	lnc-DGCR6-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-DGCR6-2:3	chr22	 18978233	 18978800	+	lnc-DGCR6-2	lnc-DGCR6-2:3	ENSG00000237517.3	DGCR5	NA	NA	NA	inter
CUST_276_PI429201921	0.9100068	A	0.92588747	A	0.98905272076571	0	lncRNA	197-3_{6001..6731}	TC09002540.hg.1	TCONS_l2_00029955-XLOC_l2_015195 // Broad TUCP // linc-FAM75A6-19 chr9:-:46698573-46705305 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:-:46698573-46705305	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00029955-XLOC_l2_015195	linc-FAM75A6-19	chr9	 46698573	 46705305	-	NA	NA	NA	NA	PTP4A2	NA	chr1:32372022-32397442	Unknown
CUST_30449_PI429285431	10.990171	P	11.448385	P	0.727886796497682	0	lncRNA	32229-1_{1..566}	n335588|CR593124|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000272319|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000272319|3.7202100|-0.0754754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335588|CR593124|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000272319|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000272319|3.7202100|-0.0754754	chr7	150778172	150778737	-	NA	NA	NA	NA	SLC4A2	NA	chr7:150768172-150773614	inner
CUST_29336_PI429285431	7.5977592	P	7.680144	P	0.944495088801269	0	lncRNA	31088-1_{1..804}	n332577|AK311489|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000430355|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000430355|3.1325200|-0.0626397	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332577|AK311489|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000430355|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000430355|3.1325200|-0.0626397	chr17	 48049327	 48050130	+	NA	NA	NA	NA	DLX4	NA	chr17:48039327-48052323	inner
CUST_37699_PI429285431	10.345104	P	9.263181	P	2.11685580520242	0	lncRNA	38791-1_{1..1116}	n346191|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1741|NULL|-1.3005200|-0.2271055	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346191|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1741|NULL|-1.3005200|-0.2271055	chr4	106405924	106407039	-	NA	NA	NA	NA	NA	"hg19_refFlat_EEF1A1:range=chr6:74227533-742297495'pad=0,hg19_refFlat_EEF1A1:range=chr6:74227533-742297495'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40"	NA	inter
LNCA_21_P0003001	0.9054328	A	0.92844164	A	0.984177991542356	0	lncRNA	TCONS_00006132	NA	NA	NA	NA	XLOC_002733	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002733), lincRNA [TCONS_00006132]"	chr3:97915789-97915848	hs|3q11.2	Agilent_HUMAN_G3V2	TCONS_00006132	TCONS_00006132	chr3	 97915789	 97915848	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_273_PI429285431	0.8990576	A	0.90313005	A	0.997181173138716	0	lncRNA	265-1_{1..627}	"transcript_id ""ENST00000425517.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425517.1"" | genecode_v17"	chr1	 69521581	 69522207	+	ENSG00000223883.1	ENST00000425517.1	RP11-424D14.1	RP11-424D14.1-001	NA	NA	NA	inter
CUST_41281_PI429285431	0.90442395	A	1.7469804	A	0.557654531349308	0	lncRNA	42263-1_{1..110}	ENST00000384898 ncrna:miRNA chromosome:GRCh37:19:4770682:4770791:1 gene:ENSG00000207630 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384898 ncrna:miRNA chromosome:GRCh37:19:4770682:4770791:1 gene:ENSG00000207630 gene_biotype:miRNA transcript_biotype:miRNA	chr19	  4770682	  4770791	+	ENSG00000207630	ENST00000384898	NA	NA	NA	NA	NA	inter
CUST_49567_PI429285431	0.90223277	A	0.9234744	A	0.985384285879836	0	lncRNA	53357-1_{1..1985}	hg19_lincRNAsTranscripts_TCONS_l2_00024914 range=chr6:132919811-132937931 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024914 range=chr6:132919811-132937931 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	132919811	132921795	-	NA	NA	NA	NA	TAAR2	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90chr6:132938289-132945414"	NA	inter
CUST_26567_PI429285431	11.74488	P	11.807509	P	0.957517659484763	0	lncRNA	28071-1_{1..454}	lnc-PDZD8-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDZD8-2:5	chr10	119245464	119245917	-	lnc-PDZD8-2	lnc-PDZD8-2:5	ENSG00000229847.2	EMX2OS	NA	NA	NA	inter
LNCA_21_P0007246	0.8907074	A	0.90720415	A	0.98863045168048	0	lncRNA	TCONS_00019407	NA	NA	NA	NA	XLOC_009230	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009230), lincRNA [TCONS_00019407]"	chr11:80808397-80808456	hs|11q14.1	Agilent_HUMAN_G3V2	TCONS_00019407	TCONS_00019407	chr11	 80808397	 80808456	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3216483	12.356662	P	11.803852	P	1.46694013841521	0	lncRNA	XR_110541	XR_110541	XR_110541	   644277	Hs.577348	LOC644277	uncharacterized LOC644277	ENST00000528953	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC644277 (LOC644277), miscRNA [XR_110541]"	chr11:111327269-111327328	hs|11q23.1	Agilent_HUMAN_G3V2	XR_110541	XR_110541	chr11	111327269	111327328	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45185_PI429285431	3.1072304	P	2.8031094	A	1.23466615500022	0	lncRNA	49656-1_{1..3000}	"gi|410170559|ref|XR_171115.1| PREDICTED: Homo sapiens uncharacterized LOC101059959 (LOC101059959), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410170559|ref|XR_171115.1| PREDICTED: Homo sapiens uncharacterized LOC101059959 (LOC101059959), misc_RNA"	NA	NA	NA	NA	NA	XR_171115.1	NA	NA	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-24.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.11;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80"	NA	Unknown
CUST_21887_PI429285431	1.0836257	A	0.886234	A	1.14662345833305	0	lncRNA	23496-1_{1..964}	lnc-C9orf146-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C9orf146-2:1	chr9	 14357151	 14358114	+	lnc-C9orf146-2	lnc-C9orf146-2:1	ENSG00000225472.1	RP11-120J1.1	NFIB	NA	chr9:14347151-14367853	inner
CUST_50732_PI429285431	4.688148	P	4.451055	P	1.1786153820783	0	lncRNA	54400-1_{1..1036}	hg19_lincRNAsTranscripts_TCONS_l2_00003282 range=chr10:120118730-120124826 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003282 range=chr10:120118730-120124826 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	120118730	120119765	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009094	2.5440245	A	2.0617452	A	1.39694895003012	0	lncRNA	TCONS_00024814	NA	NA	NA	NA	XLOC_011660	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011660), lincRNA [TCONS_00024814]"	chr16:19940522-19940581	hs|16p12.3	Agilent_HUMAN_G3V2	TCONS_00024814	TCONS_00024814	chr16	 19940522	 19940581	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44305_PI429285431	0.90509677	A	1.1012975	A	0.872846138858845	0	lncRNA	48938-1_{1..2295}	"gi|299782556|ref|NR_033844.1| Homo sapiens uncharacterized LOC253573 (LOC253573), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299782556|ref|NR_033844.1| Homo sapiens uncharacterized LOC253573 (LOC253573), non-coding RNA"	Chr3	186172770	186175064	-	253573	NR_033844.1	NA	NA	NA	NA	NA	inter
CUST_24311_PI429285431	3.4090428	P	3.2969234	P	1.08081484849146	0	lncRNA	25862-1_{1..566}	lnc-SPINK7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPINK7-1:1	chr5	147695202	147695767	+	lnc-SPINK7-1	lnc-SPINK7-1:1	ENSG00000254282.1	RP11-373N22.4	SPINK7	NA	chr5:147687274-147695482	inner
LNCA_21_P0010230	3.5363345	P	3.351177	P	1.13694108709376	0	lncRNA	TCONS_00028992	NA	NA	NA	NA	XLOC_013910	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013910), lincRNA [TCONS_00028992]"	chr21:32965552-32965611	hs|21q22.11	Agilent_HUMAN_G3V2	TCONS_00028992	TCONS_00028992	chr21	 32965552	 32965611	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002970	0.87715733	A	0.8847888	A	0.994724234081524	0	lncRNA	AL832184	NA	AL832184	NA	Hs.518057	XLOC_002693	NA	NA	THC2632621	NA	"BROAD Institute lincRNA (XLOC_002693), lincRNA [TCONS_00006084]"	chr3:67894731-67939447	hs|3p14.1	Agilent_HUMAN_G3V2	AL832184	AL832184	chr3	 67894731	 67939447	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011912	0.8765564	A	0.8834951	A	0.995202006977548	0	lncRNA	TCONS_l2_00014537	NA	NA	NA	NA	XLOC_l2_007986	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007986), lincRNA [TCONS_l2_00014537]"	chr2:43259007-43258948	hs|2p21	Agilent_HUMAN_G3V2	TCONS_l2_00014537	TCONS_l2_00014537	chr2	 43258948	 43259007	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013475	7.3031826	P	5.288307	P	4.04145728612657	0	lncRNA	TCONS_l2_00027739	NA	NA	NA	NA	XLOC_l2_014191	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014191), lincRNA [TCONS_l2_00027739]"	chr8:47610171-47610230	hs|8q11.1	Agilent_HUMAN_G3V2	TCONS_l2_00027739	TCONS_l2_00027739	chr8	 47610171	 47610230	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26111_PI429285431	3.923816	P	3.477333	P	1.36271418148053	0	lncRNA	27622-1_{1..264}	lnc-RBPMS2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBPMS2-1:2	chr15	 64992684	 64992947	-	lnc-RBPMS2-1	lnc-RBPMS2-1:2	ENSG00000259526.1	RP11-330L19.4	OAZ2	NA	chr15:64982684-64995462	inner
CUST_25416_PI429285431	6.532803	P	7.1633434	P	0.645934417992088	0	lncRNA	26946-1_{1..585}	lnc-INTS4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-INTS4-2:1	chr11	 77583198	 77583782	-	lnc-INTS4-2	lnc-INTS4-2:1	ENSG00000254459.1	RP11-91P24.7	INTS4	"hg19_refFlat_AAMDC:range=chr11:77553543-775833615'pad=0,hg19_refFlat_AAMDC:range=chr11:77553543-775833615'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60chr11:77589766-77593308"	NA	inner
CUST_19036_PI429285431	0.88520736	A	0.89746475	A	0.991539815178687	0	lncRNA	20726-1_{1..2400}	lnc-POM121L4P-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-POM121L4P-2:1	chr22	 21078529	 21080928	+	lnc-POM121L4P-2	lnc-POM121L4P-2:1	ENSG00000234252	AC007308.6	PI4KA	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30chr22:21068529-21090208"	NA	inner
LNCA_21_P0007519	0.87404454	A	0.87729603	A	0.997748776686589	0	lncRNA	TCONS_00020288	NA	NA	NA	NA	XLOC_009633	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009633), lincRNA [TCONS_00020288]"	chr12:6404643-6405270	hs|12p13.31	Agilent_HUMAN_G3V2	TCONS_00020288	TCONS_00020288	chr12	  6404643	  6405270	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4219_PI429285431	1.2561527	A	1.8265766	A	0.67341889199436	0	lncRNA	4178-1_{1..558}	"transcript_id ""ENST00000418254.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418254.2"" | genecode_v17"	chr12	 31150189	 31150746	-	ENSG00000226472.3	ENST00000418254.2	RP11-551L14.4	RP11-551L14.4-003	TSPAN11	NA	chr12:31140189-31149537	inter
CUST_14613_PI429285431	3.2852316	A	2.5300646	A	1.68782695633942	0	lncRNA	16281-1_{1..1089}	lnc-SCRG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCRG1-1:1	chr4	174291443	174292531	-	lnc-SCRG1-1	lnc-SCRG1-1:1	XLOC_004165	linc-HMGB2	SAP30	NA	chr4:174292093-174298683	inter
CUST_50162_PI429285431	5.882799	P	5.435855	P	1.36314969390701	0	lncRNA	53888-1_{1..771}	hg19_lincRNAsTranscripts_TCONS_l2_00029212 range=chr9:14989300-14993140 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029212 range=chr9:14989300-14993140 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 14989300	 14990070	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_100_PI429285431	3.6428351	P	2.8547645	A	1.72676361631532	0	lncRNA	92-1_{1..2748}	"transcript_id ""ENST00000466430.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000466430.1"" | genecode_v17"	chr1	    89295	    92042	-	ENSG00000238009.2	ENST00000466430.1	RP11-34P13.7	RP11-34P13.7-001	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80"	NA	inter
CUST_14896_PI429285431	2.1921575	A	1.5032673	A	1.61204296965933	0	lncRNA	16560-1_{1..913}	lnc-SGCG-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SGCG-3:3	chr13	 23692055	 23692967	+	lnc-SGCG-3	lnc-SGCG-3:3	XLOC_010306	linc-SGCG-3	NA	NA	NA	inter
CUST_16106_PI429285431	1.0499307	A	0.8828851	A	1.12275690906462	0	lncRNA	17813-1_{1..307}	lnc-C10orf31-10:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf31-10:4	chr10	  9845513	  9845819	-	lnc-C10orf31-10	lnc-C10orf31-10:4	XLOC_008727	linc-KIN-2	NA	NA	NA	inter
LNCA_24_P169524	0.8751643	A	1.8180565	A	0.520189000989599	0	lncRNA	XR_132476	XR_132476	XR_132476	   343052	Hs.516530	LOC343052	"immunoglobulin superfamily, DCC subclass, member 3 pseudogene"	NA	NA	NA	"PREDICTED: Homo sapiens immunoglobulin superfamily DCC subclass member 3-like (LOC343052), miscRNA [XR_132476]"	chr1:153774198-153774257	hs|1q21.3	Agilent_HUMAN_G3V2	XR_132476	XR_132476	chr1	153774198	153774257	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44999_PI429285431	1.0578318	A	1.0619394	A	0.997156877989531	0	lncRNA	49506-3_{6001..8498}	"gi|392306976|ref|NR_038343.2| Homo sapiens MAGI2 antisense RNA 3 (MAGI2-AS3), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|392306976|ref|NR_038343.2| Homo sapiens MAGI2 antisense RNA 3 (MAGI2-AS3), transcript variant 1, non-coding RNA"	Chr7	 79089276	 79091773	+	100505881	NR_038343.2	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60"	NA	inter
CUST_735_PI429285431	2.0367594	A	2.1751118	A	0.908556160810644	0	lncRNA	728-1_{1..3000}	"transcript_id ""ENST00000454224.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454224.1"" | genecode_v17"	chr2	  8699963	  8702962	-	ENSG00000236008.1	ENST00000454224.1	AC011747.4	AC011747.4-001	NA	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30"	NA	inter
CUST_25221_PI429285431	1.4386287	A	0.8769103	A	1.47602627163214	0	lncRNA	26752-1_{1..923}	lnc-GXYLT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GXYLT1-2:1	chr12	 41867167	 41868089	-	lnc-GXYLT1-2	lnc-GXYLT1-2:1	ENSG00000257228.1	RP11-413B19.2	PDZRN4	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60chr12:41857167-41877312"	NA	inner
CUST_40354_PI429285431	1.3093593	A	1.8551021	A	0.685038606036341	0	lncRNA	41155-1_{1..1266}	n409078|NR_033175|lncRNA|Homosapiens||RefGeneNoncode|NR_033175||14.3120000|-0.1231146	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409078|NR_033175|lncRNA|Homosapiens||RefGeneNoncode|NR_033175||14.3120000|-0.1231146	chr5	109218882	109220147	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44829_PI429285431	4.755432	P	2.589811	A	4.48659512627341	0	lncRNA	49358-3_{6001..7439}	"gi|395394050|ref|NR_073033.1| Homo sapiens LATS, large tumor suppressor, homolog 1 (Drosophila) (LATS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|395394050|ref|NR_073033.1| Homo sapiens LATS, large tumor suppressor, homolog 1 (Drosophila) (LATS1), transcript variant 3, non-coding RNA"	Chr6	149985289	149986727	-	9113	NR_073033.1	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_47689_PI429285431	0.8922374	A	0.8913317	A	1.00062798049868	0	lncRNA	51664-2_{3001..6000}	"gi|385137062|ref|NR_047600.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 30, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137062|ref|NR_047600.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 30, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047600.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0005028	4.918055	P	5.2646265	P	0.786450844024927	0	lncRNA	TCONS_00012176	NA	NA	NA	NA	XLOC_005731	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005731), lincRNA [TCONS_00012176]"	chr6:43834277-43834218	hs|6p21.1	Agilent_HUMAN_G3V2	TCONS_00012176	TCONS_00012176	chr6	 43834218	 43834277	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34541_PI429285431	5.7606726	P	6.2182293	P	0.728218501386316	0	lncRNA	36002-1_{1..2861}	n341421|AK025806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3891|NULL|-0.7970650|-0.2403415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341421|AK025806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3891|NULL|-0.7970650|-0.2403415	chr13	101360578	101363438	+	NA	NA	NA	NA	NALCN	"hg19_refFlat_NALCN:range=chr13:101707647-1020514775'pad=0,hg19_refFlat_NALCN:range=chr13:101707647-1020514775'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00chr13:101706130-101721638"	NA	inner
CUST_16821_PI429285431	1.0843995	A	0.8791688	A	1.15287068652118	0	lncRNA	18528-1_{1..912}	lnc-TPBG-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPBG-2:1	chr6	 82981934	 82982845	+	lnc-TPBG-2	lnc-TPBG-2:1	XLOC_005368	linc-TPBG-1	NA	NA	NA	inter
LNCA_21_P0003093	5.2148747	P	5.899458	P	0.622185509295736	0	lncRNA	THC2591825	NA	NA	NA	NA	XLOC_002997	NA	NA	THC2591825	NA	"BROAD Institute lincRNA (XLOC_002997), lincRNA [TCONS_00006381]"	chr3:195438282-195438341	hs|3q29	Agilent_HUMAN_G3V2	THC2591825	THC2591825	chr3	195438282	195438341	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27881_PI429285431	5.47878	P	6.01326	P	0.690407479935774	0	lncRNA	29474-1_{1..361}	n325117|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000131979|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000131979|-1.0153100|-0.2178889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325117|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000131979|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000131979|-1.0153100|-0.2178889	chr2	220303075	220303435	+	NA	NA	NA	NA	SPEG	NA	chr2:220299700-220320708	inner
CUST_13872_PI429285431	1.8026733	A	1.7700689	A	1.02285695466843	0	lncRNA	15516-1_{1..587}	lnc-AC092327.1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092327.1-3:3	chr16	 86234118	 86234704	-	lnc-AC092327.1-3	lnc-AC092327.1-3:3	XLOC_012043	linc-COX4NB-4	NA	NA	NA	inter
CUST_15151_PI429285431	1.8409284	A	2.703715	A	0.549889406967812	0	lncRNA	16812-3_{6001..8111}	lnc-SEPT9-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-SEPT9-3:2	chr17	 75563027	 75565137	+	lnc-SEPT9-3	lnc-SEPT9-3:2	XLOC_012317	linc-TNRC6C-3	LOC100652922	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr17:75548387-75550976"	NA	inter
CUST_3150_PI429285431	3.1041653	P	2.999305	P	1.07539025251558	0	lncRNA	3129-1_{1..500}	"transcript_id ""ENST00000517829.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517829.1"" | genecode_v17"	chr8	 64298421	 64298920	-	ENSG00000253205.1	ENST00000517829.1	CTD-3046C4.1	CTD-3046C4.1-002	NA	NA	NA	inter
CUST_19644_PI429285431	2.4442651	A	0.92879784	A	2.85891407450292	0	lncRNA	21300-1_{1..562}	lnc-SLC35A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC35A1-1:1	chr6	 88362834	 88363395	+	lnc-SLC35A1-1	lnc-SLC35A1-1:1	ENSG00000249719.1	RP3-486L4.3	ORC3	"hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-28.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00chr6:88352834-88372932"	NA	inner
CUST_30210_PI429285431	6.282029	P	6.532523	P	0.840608529244917	0	lncRNA	31985-1_{1..379}	n335044|AJ564948|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248828|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248828|-1.1828800|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335044|AJ564948|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248828|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248828|-1.1828800|-1.0000000	chrY	  4868267	  4868645	+	NA	NA	NA	NA	PCDH11Y	NA	chrY:4868267-4878646	inner
CUST_18019_PI429285431	0.9049336	A	1.7379274	A	0.561363123496672	0	lncRNA	19752-1_{1..296}	lnc-C5orf38-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf38-3:2	chr5	  2960519	  2960814	+	lnc-C5orf38-3	lnc-C5orf38-3:2	XLOC_004257	linc-IRX1-7	NA	NA	NA	inter
CUST_5096_PI429285431	3.3448548	P	2.4904602	A	1.80799990255903	0	lncRNA	5036-1_{1..591}	"transcript_id ""ENST00000562975.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562975.1"" | genecode_v17"	chr15	 24157556	 24158146	+	ENSG00000261622.1	ENST00000562975.1	RP11-484P15.1	RP11-484P15.1-001	NA	NA	NA	inter
CUST_17829_PI429285431	1.1192164	A	0.91159916	A	1.15477937053104	0	lncRNA	19564-1_{1..225}	lnc-DLGAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLGAP1-1:1	chr18	  3480401	  3480625	-	lnc-DLGAP1-1	lnc-DLGAP1-1:1	XLOC_012747	linc-MYOM1-2	NA	NA	NA	inter
CUST_18516_PI429285431	9.8541765	P	8.972445	P	1.8425854168796	0	lncRNA	20230-1_{1..2008}	lnc-NOTCH2NL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-NOTCH2NL-1:1	chr1	145115735	145117742	+	lnc-NOTCH2NL-1	lnc-NOTCH2NL-1:1	ENSG00000223380	SEC22B	SEC22B	NA	chr1:145105735-145116922	inner
LNCA_21_P0014307	1.0195565	A	0.93054056	A	1.06364442478668	0	lncRNA	XR_109236	XR_109236	XR_109236	NA	Hs.730130	LOC100287175	uncharacterized LOC100287175	NA	THC2778127	NA	"PREDICTED: Homo sapiens hypothetical LOC100287175 (LOC100287175), miscRNA [XR_109236]"	chr16:688172-688231	hs|16p13.3	Agilent_HUMAN_G3V2	XR_109236	XR_109236	chr16	   688172	   688231	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014305	0.9062084	A	3.6199682	P	0.152432263697039	0	lncRNA	XR_109233	XR_109233	XR_109233	NA	NA	LOC100507452	uncharacterized LOC100507452	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507452, transcript variant 2 (LOC100507452), miscRNA [XR_109233]"	chr15:101433993-101433934	hs|15q26.3	Agilent_HUMAN_G3V2	XR_109233	XR_109233	chr15	101433934	101433993	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46771_PI429285431	4.084694	P	1.8537964	A	4.69425951087543	0	lncRNA	50921-1_{1..3000}	"gi|147902149|ref|NR_003554.1| Homo sapiens ubiquitin specific peptidase 32 pseudogene 2 (USP32P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|147902149|ref|NR_003554.1| Homo sapiens ubiquitin specific peptidase 32 pseudogene 2 (USP32P2), non-coding RNA"	Chr17	 18414576	 18417575	-	220594	NR_003554.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10"	NA	inter
CUST_20781_PI429285431	5.179807	P	5.5621247	P	0.767204081192436	0	lncRNA	22414-1_{1..578}	lnc-CALCOCO2-8:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALCOCO2-8:4	chr17	 46628291	 46628868	+	lnc-CALCOCO2-8	lnc-CALCOCO2-8:4	ENSG00000230148.4	HOXB-AS1	HOXB3	"hg19_refFlat_HOXB3:range=chr17:46627696-466298365'pad=0,hg19_refFlat_HOXB3:range=chr17:46627696-466298365'pad=0 3'pad=0 strand=- repeatMasking=none,-110.90;hg19_refFlat_HOXA3:range=chr7:27147534-271502595'pad=0,hg19_refFlat_HOXA3:range=chr7:27147534-271502595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50chr17:46626232-46638610"	NA	inner
LNCA_21_P0009699	0.89958555	A	0.9194712	A	0.986310877756634	0	lncRNA	THC2685187	NA	NA	NA	NA	XLOC_013026	NA	NA	THC2685187	NA	"BROAD Institute lincRNA (XLOC_013026), lincRNA [TCONS_00026975]"	chr19:029386546-029386605	hs|19q12	Agilent_HUMAN_G3V2	THC2685187	THC2685187	chr19	 29386546	 29386605	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006350	3.4517152	P	3.0714598	P	1.30157225211015	0	lncRNA	TCONS_00016579	NA	NA	NA	NA	XLOC_007354	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007354), lincRNA [TCONS_00016579]"	chr9:38965055-38995851	hs|9p13.1	Agilent_HUMAN_G3V2	TCONS_00016579	TCONS_00016579	chr9	 38965055	 38995851	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12956_PI429285431	5.6779222	P	5.250206	P	1.34510258041194	0	lncRNA	14584-1_{1..3000}	lnc-SLC35A5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC35A5-1:1	chr3	112315667	112318666	+	lnc-SLC35A5-1	lnc-SLC35A5-1:1	XLOC_002759	linc-GTPBP8	CCDC80	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00chr3:112323407-112332287"	NA	inter
LNCA_21_P0012804	8.432499	P	8.479613	P	0.967870543923773	0	lncRNA	ENST00000509161	XR_109837	XR_109837	NA	Hs.535010	XLOC_l2_011291	NA	ENST00000509161	THC2625225	NA	"PREDICTED: Homo sapiens hypothetical LOC100507639 (LOC100507639), miscRNA [XR_109837]"	chr4:142244647-142244588	hs|4q31.21	Agilent_HUMAN_G3V2	ENST00000509161	ENST00000509161	chr4	142244588	142244647	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_24_P32627	4.78635	P	4.1374407	P	1.56798232843525	0	lncRNA	ENST00000514853	XR_110564	XR_110564	NA	Hs.582532	NA	NA	ENST00000514853	THC2553965	NA	"PREDICTED: Homo sapiens hCG1981531 (LOC728586), miscRNA [XR_110564]"	chr5:127276949-127277008	hs|5q23.2	Agilent_HUMAN_G3V2	ENST00000514853	ENST00000514853	chr5	127276949	127277008	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47088_PI429285431	11.363171	P	11.674755	P	0.805756596846484	0	lncRNA	51170-1_{1..569}	"gi|397139699|ref|XR_158943.1| PREDICTED: Homo sapiens testis-expressed sequence 264 protein-like (LOC100996349), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139699|ref|XR_158943.1| PREDICTED: Homo sapiens testis-expressed sequence 264 protein-like (LOC100996349), misc_RNA"	NA	NA	NA	NA	NA	XR_158943.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013657	0.8910043	A	0.9076351	A	0.988538595985708	0	lncRNA	CR933606	NA	CR933606	NA	Hs.529357	LOC642236	FSHD region gene 1 pseudogene	NA	THC2506186	NA	"BROAD Institute lincRNA (XLOC_l2_015213), lincRNA [TCONS_l2_00029362]"	chr9:068433256-068433197	hs|9q13	Agilent_HUMAN_G3V2	CR933606	CR933606	chr9	 68433197	 68433256	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23416_PI429285431	6.6018906	P	6.5372896	P	1.0457956685558	0	lncRNA	24984-1_{1..572}	lnc-MAPK8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MAPK8-2:1	chr10	 48980202	 48980773	+	lnc-MAPK8-2	lnc-MAPK8-2:1	ENSG00000227781.2	RP11-508M1.5	FAM25C	"hg19_refFlat_CTSL1:range=chr9:90342519-903460225'pad=0,hg19_refFlat_CTSL1:range=chr9:90342519-903460225'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50chr10:48970202-48990342"	NA	inter
CUST_34288_PI429285431	4.6744313	P	5.2759213	P	0.659072920304736	0	lncRNA	35786-1_{1..3000}	n341147|AK125355|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3613|NULL|0.4813550|-0.2401980	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341147|AK125355|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3613|NULL|0.4813550|-0.2401980	chr11	126030608	126033607	+	NA	NA	NA	NA	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_TEAD1:range=chr11:12785780-129587695'pad=0,hg19_refFlat_TEAD1:range=chr11:12785780-129587695'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90"	NA	inter
CUST_16475_PI429285431	4.882497	P	5.188932	P	0.80863749201293	0	lncRNA	18173-1_{1..559}	lnc-ACP1-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACP1-7:2	chr2	   496185	   496743	+	lnc-ACP1-7	lnc-ACP1-7:2	XLOC_001306	linc-SNTG2-6	NA	NA	NA	inter
LNCA_21_P0010572	0.8838084	A	1.4825457	A	0.660331649195345	0	lncRNA	ENST00000330493	NA	BC032956	NA	Hs.647746	XLOC_l2_000581	NA	ENST00000330493	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC641515 (LOC641515), miscRNA [XR_114966]"	chr1:202793010-202794348	hs|1q32.1	Agilent_HUMAN_G3V2	ENST00000330493	ENST00000330493	chr1	202793010	202794348	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1092_PI429285431	0.8899761	A	1.2273823	A	0.791462993038132	0	lncRNA	1081-1_{1..700}	"transcript_id ""ENST00000601277.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601277.1"" | genecode_v17"	chr2	145425545	145426244	+	ENSG00000226674.3	ENST00000601277.1	AC074093.1	AC074093.1-026	NA	NA	NA	inter
CUST_44034_PI429285431	5.019738	P	4.3986278	P	1.53805831108954	0	lncRNA	48716-2_{3001..3464}	"gi|358356410|ref|NR_045562.1| Homo sapiens GULP, engulfment adaptor PTB domain containing 1 (GULP1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|358356410|ref|NR_045562.1| Homo sapiens GULP, engulfment adaptor PTB domain containing 1 (GULP1), transcript variant 4, non-coding RNA"	Chr2	189160390	189160853	+	51454	NR_045562.1	NA	NA	NA	NA	NA	inter
CUST_47181_PI429285431	0.89110106	A	1.0134722	A	0.918676519275997	0	lncRNA	51258-1_{1..3000}	"gi|149999363|ref|NR_003578.1| Homo sapiens zinc finger protein 702, pseudogene (ZNF702P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|149999363|ref|NR_003578.1| Homo sapiens zinc finger protein 702, pseudogene (ZNF702P), non-coding RNA"	Chr19	 53471504	 53474503	-	79986	NR_003578.1	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10"	NA	inter
CUST_6251_PI429285431	1.5366721	A	1.293695	A	1.18343223690023	0	lncRNA	6176-1_{1..285}	"transcript_id ""ENST00000580564.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000580564.1"" | genecode_v17"	chr18	 70535623	 70535907	+	ENSG00000263958.1	ENST00000580564.1	RP11-676J15.1	RP11-676J15.1-001	NETO1	NA	chr18:70525623-70534810	inter
CUST_4891_PI429285431	2.0300255	A	1.9867051	A	1.03048278231525	0	lncRNA	4833-1_{1..518}	"transcript_id ""ENST00000554552.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554552.1"" | genecode_v17"	chr14	 75018884	 75019401	+	ENSG00000258425.1	ENST00000554552.1	CTD-2207P18.1	CTD-2207P18.1-001	LTBP2	"hg19_refFlat_LTBP2:range=chr14:74967587-750786475'pad=0,hg19_refFlat_LTBP2:range=chr14:74967587-750786475'pad=0 3'pad=0 strand=- repeatMasking=none,-106.70chr14:75008884-75036751"	NA	inner
CUST_50050_PI429285431	1.0710621	A	0.91782844	A	1.11205925290564	0	lncRNA	53786-1_{1..381}	hg19_lincRNAsTranscripts_TCONS_l2_00027765 range=chr8:55709127-55750199 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027765 range=chr8:55709127-55750199 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 55709127	 55709507	+	NA	NA	NA	NA	LOC100287651	NA	chr8:55699127-55760199	inter
CUST_10098_PI429285431	1.7590444	A	2.4991925	A	0.598677891817582	0	lncRNA	11623-1_{1..3000}	lnc-BATF3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BATF3-2:2	chr1	212810445	212813444	-	lnc-BATF3-2	lnc-BATF3-2:2	XLOC_001195	linc-TMEM206-2	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10"	NA	inter
CUST_47706_PI429285431	1.2387025	A	0.8802041	A	1.28209076457814	0	lncRNA	51671-2_{3001..5908}	"gi|385137070|ref|NR_047608.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 38, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137070|ref|NR_047608.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 38, non-coding RNA"	ChrY	 15363259	 15366166	-	7404	NR_047608.1	NA	NA	NA	NA	NA	inter
CUST_44998_PI429285431	9.283577	P	9.2034	P	1.05714773094309	0	lncRNA	49506-2_{3001..6000}	"gi|392306976|ref|NR_038343.2| Homo sapiens MAGI2 antisense RNA 3 (MAGI2-AS3), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|392306976|ref|NR_038343.2| Homo sapiens MAGI2 antisense RNA 3 (MAGI2-AS3), transcript variant 1, non-coding RNA"	Chr7	 79086276	 79089275	+	100505881	NR_038343.2	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60"	NA	inter
CUST_976_PI429285431	3.7957408	P	2.9599867	A	1.78478970873049	0	lncRNA	965-1_{1..390}	"transcript_id ""ENST00000427042.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427042.1"" | genecode_v17"	chr2	102095852	102096241	+	ENSG00000223826.1	ENST00000427042.1	AC092570.2	AC092570.2-001	RFX8	NA	chr2:102085852-102091165	inter
CUST_21740_PI429285431	0.898526	A	1.166146	A	0.830688795324536	0	lncRNA	23350-1_{1..365}	lnc-SCAF11-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SCAF11-1:2	chr12	 46004322	 46004686	-	lnc-SCAF11-1	lnc-SCAF11-1:2	ENSG00000257657.1	RP11-352M15.1	NA	NA	NA	inter
CUST_23888_PI429285431	0.88292354	A	1.113973	A	0.852014884897125	0	lncRNA	25445-2_{3001..3204}	lnc-AC127496.3-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC127496.3-8:1	chr17	 78781767	 78781970	-	lnc-AC127496.3-8	lnc-AC127496.3-8:1	ENSG00000262833.1	RP11-28G8.1	RPTOR	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90chr17:78768767-78789432"	NA	inner
CUST_18290_PI429285431	0.87540114	A	0.87501884	A	1.00026502528012	0	lncRNA	20021-1_{1..3000}	lnc-TCL1B-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCL1B-1:12	chr14	 96145409	 96148408	+	lnc-TCL1B-1	lnc-TCL1B-1:12	ENSG00000187621	TCL6	TCL1B	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80chr14:96152754-96156170"	NA	inter
LNCA_21_P0008006	0.87374324	A	2.038293	A	0.446103459109461	0	lncRNA	ENST00000450187	NA	NA	NA	NA	XLOC_010668	NA	ENST00000450187	NA	NA	"BROAD Institute lincRNA (XLOC_010668), lincRNA [TCONS_00021675]"	chr13:80144698-80140884	hs|13q31.1	Agilent_HUMAN_G3V2	ENST00000450187	ENST00000450187	chr13	 80140884	 80144698	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33639_PI429285431	2.3954325	A	1.5379595	A	1.81186190320332	0	lncRNA	35204-1_{1..354}	n340401|AF009270|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2862|NULL|-1.3057700|-0.1277467	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340401|AF009270|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2862|NULL|-1.3057700|-0.1277467	chr5	 11240478	 11240831	+	NA	NA	NA	NA	CTNND2	NA	chr5:11230478-11251508	inner
CUST_40452_PI429285431	0.88900346	A	0.9973295	A	0.927663806597869	0	lncRNA	41226-1_{1..1225}	n409360|NR_033725|lncRNA|Homosapiens||RefGeneNoncode|NR_033725||-0.2028680|-0.3000372	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409360|NR_033725|lncRNA|Homosapiens||RefGeneNoncode|NR_033725||-0.2028680|-0.3000372	chr3	180704967	180706191	-	NA	NA	NA	NA	FXR1	NA	chr3:180694967-180700541	inter
LNCA_33_P3365985	9.189318	P	9.743738	P	0.680930754664596	0	lncRNA	XR_132811	XR_132811	XR_132811	   401357	Hs.457696	LOC401357	uncharacterized LOC401357	NA	THC2480301	NA	"PREDICTED: Homo sapiens hypothetical LOC401357 (LOC401357), miscRNA [XR_132811]"	chr7:56880061-56880002	hs|7p11.2	Agilent_HUMAN_G3V2	XR_132811	XR_132811	chr7	 56880002	 56880061	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15206_PI429285431	1.3921229	A	0.8925609	A	1.41378427447513	0	lncRNA	16874-1_{1..368}	lnc-C9orf135-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf135-1:1	chr9	 72408959	 72409326	+	lnc-C9orf135-1	lnc-C9orf135-1:1	XLOC_007393	linc-C9orf135-1	NA	NA	NA	inter
CUST_1047_PI429285431	0.88768774	A	0.8803197	A	1.0051201998019	0	lncRNA	1037-1_{1..555}	"transcript_id ""ENST00000437837.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437837.1"" | genecode_v17"	chr2	121076583	121077137	+	ENSG00000235840.1	ENST00000437837.1	AC012363.13	AC012363.13-001	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30"	NA	inter
CUST_11736_PI429285431	2.6007907	A	1.3515514	A	2.37716047730875	0	lncRNA	13317-1_{1..3000}	lnc-TSC22D2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSC22D2-1:1	chr3	150182256	150185255	+	lnc-TSC22D2-1	lnc-TSC22D2-1:1	XLOC_002872	linc-EIF2A	TSC22D2	NA	chr3:150172256-150177631	inter
CUST_22980_PI429285431	0.9065086	A	0.9129517	A	0.995543941223617	0	lncRNA	24554-1_{1..575}	lnc-RHOXF2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RHOXF2-1:2	chrX	119260855	119261429	+	lnc-RHOXF2-1	lnc-RHOXF2-1:2	ENSG00000258545.1	RP4-755D9.1	NA	NA	NA	inter
CUST_31696_PI429285431	0.8910767	A	0.88473624	A	1.00440454358559	0	lncRNA	33440-1_{1..1551}	n338224|CR605371|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|616|NULL|-1.1667700|-0.2815272	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338224|CR605371|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|616|NULL|-1.1667700|-0.2815272	chr1	151102535	151104085	-	NA	NA	NA	NA	SEMA6C	NA	chr1:151104161-151114086	inter
CUST_6849_PI429285431	4.273867	P	4.0736074	P	1.14890507153484	0	lncRNA	6797-1_{1..576}	"transcript_id ""ENST00000424837.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424837.1"" | genecode_v17"	chr21	 34331196	 34331771	+	ENSG00000228961.1	ENST00000424837.1	AP000282.3	AP000282.3-001	NA	NA	NA	inter
LNCA_21_P0012290	2.5562053	A	2.4953632	A	1.04307442493534	0	lncRNA	TCONS_l2_00017929	NA	NA	NA	NA	XLOC_l2_009492	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009492), lincRNA [TCONS_l2_00017929]"	chr22:23732794-23732735	hs|22q11.23	Agilent_HUMAN_G3V2	TCONS_l2_00017929	TCONS_l2_00017929	chr22	 23732735	 23732794	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27335_PI429285431	1.212421	A	1.0534408	A	1.11649763871305	0	lncRNA	28895-1_{1..315}	n324491|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041048|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041048|-1.3615300|-0.3990965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324491|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041048|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041048|-1.3615300|-0.3990965	chr6	 57798853	 57799167	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43767_PI429285431	1.8243974	A	1.2918131	A	1.44651802425656	0	lncRNA	48503-2_{3001..5079}	"gi|223278383|ref|NR_026778.1| Homo sapiens HNRNPU antisense RNA 1 (HNRNPU-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223278383|ref|NR_026778.1| Homo sapiens HNRNPU antisense RNA 1 (HNRNPU-AS1), non-coding RNA"	Chr1	245006940	245009018	-	284702	NR_026778.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_COX20:range=chr1:244999017-2450064785'pad=0,hg19_refFlat_COX20:range=chr1:244999017-2450064785'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10"	NA	inter
LNCA_21_P0014219	0.8753358	A	0.9004943	A	0.982712628043076	0	lncRNA	XR_108902	XR_108902	XR_108902	NA	NA	LOC100507204	uncharacterized LOC100507204	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507204 (LOC100507204), miscRNA [XR_108902]"	chr8:81397521-81397462	hs|8q21.13	Agilent_HUMAN_G3V2	XR_108902	XR_108902	chr8	 81397462	 81397521	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15605_PI429285431	4.522585	P	4.0009155	P	1.43561559474594	0	lncRNA	17291-1_{1..214}	lnc-ITSN1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITSN1-2:4	chr21	 35308094	 35308307	+	lnc-ITSN1-2	lnc-ITSN1-2:4	XLOC_013921	linc-SLC5A3-2	NA	NA	NA	inter
CUST_14617_PI429285431	0.8745183	A	0.87594604	A	0.999010855570613	0	lncRNA	16288-1_{1..752}	lnc-CLDN24-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLDN24-2:1	chr4	184271930	184272681	-	lnc-CLDN24-2	lnc-CLDN24-2:1	XLOC_004198	linc-CLDN24-1	NA	NA	NA	inter
CUST_50939_PI429285431	7.465416	P	8.609812	P	0.452379042556035	0	lncRNA	54581-1_{1..995}	hg19_lincRNAsTranscripts_TCONS_00079056_HOTAIR range=chr12:54356098-54360191 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00079056_HOTAIR range=chr12:54356098-54360191 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 54356098	 54357092	-	NA	NA	NA	NA	HOXC11	NA	chr12:54366910-54370191	inter
CUST_37414_PI429285431	2.0480611	A	2.8973398	A	0.555062179478585	0	lncRNA	38520-1_{1..1505}	n345869|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1418|NULL|-1.3118000|-0.1472830	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n345869|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1418|NULL|-1.3118000|-0.1472830	chr16	 31053313	 31054817	+	NA	NA	NA	NA	STX4	"hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00chr16:31044903-31051485"	NA	inter
LNCA_21_P0011926	3.8606913	P	3.9074836	P	0.968086389034868	0	lncRNA	TCONS_l2_00014653	NA	NA	NA	NA	XLOC_l2_008086	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008086), lincRNA [TCONS_l2_00014653]"	chr2:74639814-74622413	hs|2p13.1	Agilent_HUMAN_G3V2	TCONS_l2_00014653	TCONS_l2_00014653	chr2	 74622413	 74639814	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014861	5.5754404	P	6.2120295	P	0.643231917197366	0	lncRNA	ENST00000556578	XR_132749	XR_132749	NA	Hs.723371	LOC100652952	NA	ENST00000556578	THC2622235	NA	"PREDICTED: Homo sapiens hypothetical LOC100652952 (LOC100652952), miscRNA [XR_132749]"	chr14:73738961-73738902	hs|14q24.2	Agilent_HUMAN_G3V2	ENST00000556578	ENST00000556578	chr14	 73738902	 73738961	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001069	0.870171	A	0.87383795	A	0.997461491422286	0	lncRNA	ENST00000416908	NA	NA	NA	NA	XLOC_000584	NA	ENST00000416908	NA	NA	"BROAD Institute lincRNA (XLOC_000584), lincRNA [TCONS_00000410]"	chr1:224960956-224961015	hs|1q42.12	Agilent_HUMAN_G3V2	ENST00000416908	ENST00000416908	chr1	224960956	224961015	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16760_PI429285431	3.236441	P	3.7955992	P	0.678698062623379	0	lncRNA	18468-1_{1..2045}	lnc-SLC35G3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC35G3-1:1	chr17	 33569037	 33571081	-	lnc-SLC35G3-1	lnc-SLC35G3-1:1	XLOC_012444	linc-AMAC1	SLFN5	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70chr17:33570086-33579908"	NA	inter
CUST_5568_PI429285431	1.1814514	A	0.8960734	A	1.21872954072775	0	lncRNA	5497-1_{1..930}	"transcript_id ""ENST00000567448.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567448.1"" | genecode_v17"	chr16	 58455265	 58456194	+	ENSG00000260186.1	ENST00000567448.1	RP11-481J2.2	RP11-481J2.2-002	NA	NA	NA	inter
CUST_1212_PI429285431	3.77988	P	4.321633	P	0.686935715093544	0	lncRNA	1203-1_{1..445}	"transcript_id ""ENST00000434645.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434645.1"" | genecode_v17"	chr2	202031688	202032132	+	ENSG00000234431.2	ENST00000434645.1	AC007283.5	AC007283.5-001	CFLAR	NA	chr2:202021688-202037411	inner
CUST_19514_PI429285431	2.052747	A	0.90864176	A	2.21009018274682	0	lncRNA	21170-1_{1..408}	lnc-ANKRD35-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD35-1:1	chr1	145542136	145542543	+	lnc-ANKRD35-1	lnc-ANKRD35-1:1	ENSG00000244619.1	RP11-315I20.3	ANKRD35	NA	chr1:145549209-145552229	inner
LNCA_21_P0014224	0.9034543	A	0.9284561	A	0.982819372315228	0	lncRNA	XR_108920	XR_108920	XR_108920	NA	Hs.598823	LOC100505760	uncharacterized LOC100505760	NA	THC2608067	NA	"PREDICTED: Homo sapiens hypothetical LOC100505760 (LOC100505760), miscRNA [XR_108920]"	chr8:70749964-70750023	hs|8q13.3	Agilent_HUMAN_G3V2	XR_108920	XR_108920	chr8	 70749964	 70750023	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33606_PI429285431	5.3971224	P	5.3952675	P	1.00128654559586	0	lncRNA	35171-1_{1..344}	n340363|AF009310|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2824|NULL|-1.2039700|-0.2568650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340363|AF009310|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2824|NULL|-1.2039700|-0.2568650	chr5	  9896656	  9896999	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26831_PI429285431	2.3490953	A	2.4861379	A	0.909381399126769	0	lncRNA	28346-2_{3001..6000}	n323903|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056029|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056029|0.3319580|-0.3342359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323903|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056029|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056029|0.3319580|-0.3342359	chrX	 21824638	 21827637	+	NA	NA	NA	NA	NA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60"	NA	inter
LNCA_21_P0007253	2.8468468	A	0.9280755	A	3.7810090435032	0	lncRNA	TCONS_00019427	NA	NA	NA	NA	XLOC_009243	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009243), lincRNA [TCONS_00019427]"	chr11:87612915-87612974	hs|11q14.2	Agilent_HUMAN_G3V2	TCONS_00019427	TCONS_00019427	chr11	 87612915	 87612974	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3367_PI429285431	1.4245436	A	1.3438354	A	1.05753704417562	0	lncRNA	3342-1_{1..561}	"transcript_id ""ENST00000452685.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452685.1"" | genecode_v17"	chr9	 12098660	 12099220	-	ENSG00000224935.1	ENST00000452685.1	RP11-74C3.1	RP11-74C3.1-001	NA	NA	NA	inter
CUST_10465_PI429285431	0.8997473	A	1.5860615	A	0.621439478370305	0	lncRNA	11991-1_{1..592}	lnc-CCDC93-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC93-1:1	chr2	118561708	118562299	-	lnc-CCDC93-1	lnc-CCDC93-1:1	XLOC_002289	linc-SLC35F5-7	NA	NA	NA	inter
CUST_15265_PI429285431	1.6376567	A	1.2531958	A	1.30537191025017	0	lncRNA	16938-1_{1..431}	lnc-QKI-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-QKI-2:1	chr6	164194173	164194603	+	lnc-QKI-2	lnc-QKI-2:1	XLOC_005531	linc-FGFR1OP-9	NA	NA	NA	inter
CUST_3986_PI429285431	0.9304949	A	0.9296553	A	1.00058213574808	0	lncRNA	3947-1_{1..2792}	"transcript_id ""ENST00000501708.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000501708.1"" | genecode_v17"	chr11	 66037303	 66040094	-	ENSG00000245156.1	ENST00000501708.1	RP11-867G23.3	RP11-867G23.3-001	KLC2	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_RAB1B:range=chr11:66036151-660437095'pad=0,hg19_refFlat_RAB1B:range=chr11:66036151-660437095'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60chr11:66027303-66035332"	NA	inner
CUST_37731_PI429285431	1.3608749	A	0.91318697	A	1.36385278737218	0	lncRNA	38826-1_{1..2390}	n346234|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1784|NULL|-1.2867800|-0.2880324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346234|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1784|NULL|-1.2867800|-0.2880324	chr2	173488298	173490687	+	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10"	NA	inter
LNCA_21_P0010750	4.4439006	P	3.9130423	P	1.44478848533846	0	lncRNA	ENST00000424587	XR_111620	XR_111620	NA	Hs.552202	XLOC_l2_000720	NA	ENST00000424587	THC2530756	NA	"PREDICTED: Homo sapiens hypothetical LOC100508047 (LOC100508047), miscRNA [XR_111620]"	chr1:236219-236160	hs|1p36.33	Agilent_HUMAN_G3V2	ENST00000424587	ENST00000424587	chr1	   236160	   236219	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9233_PI429285431	2.0571394	A	1.9954885	A	1.04365935459436	0	lncRNA	10743-1_{1..2954}	lnc-CMPK2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CMPK2-2:2	chr2	  7058533	  7061486	-	lnc-CMPK2-2	lnc-CMPK2-2:2	ENSG00000228203	AC017076.4	RNF144A	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.87;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-55.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30chr2:7057523-7068813"	NA	inner
CUST_35526_PI429285431	3.0561738	A	2.869867	A	1.13784717394373	0	lncRNA	36932-1_{1..1646}	n342633|BC039383|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5135|NULL|-1.0645500|-0.1655168	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n342633|BC039383|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5135|NULL|-1.0645500|-0.1655168	chr5	  1887445	  1889090	+	NA	NA	NA	NA	IRX4	"hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0,hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30chr5:1877541-1882880"	NA	inter
CUST_20001_PI429285431	9.59507	P	9.91287	P	0.802292379983801	0	lncRNA	21654-1_{1..662}	lnc-TIGD1L2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIGD1L2-1:4	chr9	 32552344	 32553005	+	lnc-TIGD1L2-1	lnc-TIGD1L2-1:4	ENSG00000235453.3	TOPORS-AS1	NDUFB6	NA	chr9:32553524-32563005	inter
LNCA_21_P0007167	0.8883301	A	1.182204	A	0.815708787950868	0	lncRNA	TCONS_00019182	NA	NA	NA	NA	XLOC_009017	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009017), lincRNA [TCONS_00019182]"	chr11:358069-358128	hs|11p15.5	Agilent_HUMAN_G3V2	TCONS_00019182	TCONS_00019182	chr11	   358069	   358128	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22078_PI429285431	2.5772038	A	2.3337538	A	1.18382021691114	0	lncRNA	23684-1_{1..1937}	lnc-C3orf52-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C3orf52-1:1	chr3	111852270	111854206	+	lnc-C3orf52-1	lnc-C3orf52-1:1	ENSG00000261488.1	RP11-757F18.5	SLC9A10	NA	chr3:111859752-111864206	inter
CUST_6164_PI429285431	0.8874742	A	0.93782216	A	0.965703385256004	0	lncRNA	6090-1_{1..795}	"transcript_id ""ENST00000601948.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601948.1"" | genecode_v17"	chr18	 39739247	 39740041	+	ENSG00000267586.2	ENST00000601948.1	RP11-21F16.1	RP11-21F16.1-010	NA	NA	NA	inter
CUST_15301_PI429285431	0.89407265	A	1.1292871	A	0.849558706747768	0	lncRNA	16979-1_{1..541}	lnc-SH3BGRL2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SH3BGRL2-1:5	chr6	 80251220	 80251760	+	lnc-SH3BGRL2-1	lnc-SH3BGRL2-1:5	XLOC_005361	linc-SH3BGRL2-1	LCA5	NA	chr6:80241220-80247147	inter
CUST_49736_PI429285431	3.5785713	P	3.2090442	P	1.29192928062698	0	lncRNA	53507-1_{1..658}	hg19_lincRNAsTranscripts_TCONS_l2_00025795 range=chr7:35985936-36013288 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025795 range=chr7:35985936-36013288 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 35985936	 35986593	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43524_PI429285431	3.2084942	P	3.3986607	P	0.876504558959103	0	lncRNA	48309-1_{1..1070}	"gi|310118620|ref|XR_110479.1| PREDICTED: Homo sapiens uncharacterized LOC730081 (LOC730081), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310118620|ref|XR_110479.1| PREDICTED: Homo sapiens uncharacterized LOC730081 (LOC730081), misc_RNA"	NA	NA	NA	NA	NA	XR_110479.1	NA	NA	NA	NA	NA	Unknown
CUST_14852_PI429285431	1.6543001	A	0.8827992	A	1.70704477489364	0	lncRNA	16515-1_{1..1493}	lnc-TAF4B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TAF4B-1:2	chr18	 24017854	 24019346	+	lnc-TAF4B-1	lnc-TAF4B-1:2	XLOC_012647	linc-DSG1-8	NA	NA	NA	inter
CUST_43362_PI429285431	8.423855	P	8.6818285	P	0.836261760563748	0	lncRNA	48179-1_{1..2251}	"gi|379643026|ref|NR_046426.1| Homo sapiens chromosome 1 open reading frame 86 (C1orf86), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379643026|ref|NR_046426.1| Homo sapiens chromosome 1 open reading frame 86 (C1orf86), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NR_046426.1	NA	NA	NA	"hg19_refFlat_PRKCZ:range=chr1:2075778-21164485'pad=0,hg19_refFlat_PRKCZ:range=chr1:2075778-21164485'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_PRKCZ:range=chr1:1982070-21164485'pad=0,hg19_refFlat_PRKCZ:range=chr1:1982070-21164485'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_PRKCZ:range=chr1:2005693-21164485'pad=0,hg19_refFlat_PRKCZ:range=chr1:2005693-21164485'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50"	NA	Unknown
CUST_36679_PI429285431	0.89243066	A	0.9019337	A	0.993434641382011	0	lncRNA	37864-1_{1..3000}	n345170|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_719|NULL|-1.2853000|-0.3165992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345170|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_719|NULL|-1.2853000|-0.3165992	chr12	 19686270	 19689269	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70"	NA	inter
CUST_11785_PI429285431	5.856865	P	6.3815193	P	0.695125656657619	0	lncRNA	13366-1_{1..248}	lnc-TRMT61B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRMT61B-4:1	chr2	 28646696	 28646943	-	lnc-TRMT61B-4	lnc-TRMT61B-4:1	XLOC_002032	linc-RBKS-5	FOSL2	NA	chr2:28636696-28637516	inter
CUST_13252_PI429285431	0.8894386	A	0.9026266	A	0.990900428960761	0	lncRNA	14883-1_{1..553}	lnc-FAM201A-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM201A-3:4	chr9	 38998270	 38998822	+	lnc-FAM201A-3	lnc-FAM201A-3:4	XLOC_007354	linc-FAM75A1-2	NA	NA	NA	inter
CUST_3926_PI429285431	0.89708036	A	0.9027813	A	0.996056206772242	0	lncRNA	3896-1_{1..462}	"transcript_id ""ENST00000530387.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530387.1"" | genecode_v17"	chr11	 42204847	 42205308	-	ENSG00000255109.1	ENST00000530387.1	CTD-2572N17.1	CTD-2572N17.1-002	NA	NA	NA	inter
CUST_9173_PI429285431	1.7843573	A	0.91559637	A	1.82609387166303	0	lncRNA	10690-1_{1..2471}	lnc-AP000783.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP000783.1.1-1:1	chr11	123329080	123331550	+	lnc-AP000783.1.1-1	lnc-AP000783.1.1-1:1	ENSG00000255414	AP000783.2	NA	NA	NA	inter
CUST_11757_PI429285431	6.474805	P	6.3992558	P	1.05376210200851	0	lncRNA	13337-1_{1..231}	lnc-RP11-295D22.1.1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-295D22.1.1-6:1	chr9	121742582	121742812	+	lnc-RP11-295D22.1.1-6	lnc-RP11-295D22.1.1-6:1	XLOC_007542	linc-CEP110-9	NA	NA	NA	inter
CUST_50229_PI429285431	8.829493	P	10.284616	P	0.364723989423649	0	lncRNA	53953-1_{1..2797}	hg19_lincRNAsTranscripts_TCONS_l2_00028766 range=chr9:67288343-67303131 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028766 range=chr9:67288343-67303131 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 67288343	 67291139	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41251_PI429285431	1.0912144	A	1.0201662	A	1.0504796396279	0	lncRNA	42203-1_{1..97}	ENST00000384832 ncrna:miRNA chromosome:GRCh37:9:97847490:97847586:1 gene:ENSG00000207563 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384832 ncrna:miRNA chromosome:GRCh37:9:97847490:97847586:1 gene:ENSG00000207563 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 97847490	 97847586	+	ENSG00000207563	ENST00000384832	NA	NA	C9orf3	NA	chr9:97837490-97849500	inner
CUST_45144_PI429285431	4.076231	P	4.43585	P	0.779370375687278	0	lncRNA	49624-1_{1..2296}	"gi|338968836|ref|NR_040092.1| Homo sapiens uncharacterized LOC100506990 (LOC100506990), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338968836|ref|NR_040092.1| Homo sapiens uncharacterized LOC100506990 (LOC100506990), transcript variant 2, non-coding RNA"	Chr8	 12294522	 12296817	+	100506990	NR_040092.1	NA	NA	NA	NA	NA	inter
CUST_40618_PI429285431	4.523863	P	4.5822105	P	0.960363514633485	0	lncRNA	41361-3_{6001..6930}	n410097|NR_036528|lncRNA|Homosapiens||RefGeneNoncode|NR_036528||26.6855000|-0.1851142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410097|NR_036528|lncRNA|Homosapiens||RefGeneNoncode|NR_036528||26.6855000|-0.1851142	chr9	100006707	100007636	+	NA	NA	NA	NA	C9orf174	NA	chr9:100069910-100139577	inner
LNCA_21_P0014478	0.8760705	A	0.8780928	A	0.998599230451557	0	lncRNA	XR_110012	XR_110012	XR_110012	NA	Hs.729595	LOC100506856	uncharacterized LOC100506856	NA	THC2508239	NA	"PREDICTED: Homo sapiens hypothetical LOC100506856 (LOC100506856), miscRNA [XR_110012]"	chr3:52679947-52680006	hs|3p21.1	Agilent_HUMAN_G3V2	XR_110012	XR_110012	chr3	 52679947	 52680006	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36746_PI429285431	5.749922	P	5.9683623	P	0.85949413487243	0	lncRNA	37919-1_{1..1705}	n345226|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_775|NULL|-1.3236300|-0.3575737	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345226|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_775|NULL|-1.3236300|-0.3575737	chr13	 50557996	 50559700	-	NA	NA	NA	NA	TRIM13	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50chr13:50571143-50571191"	NA	inter
CUST_12420_PI429285431	4.7735114	P	4.468004	P	1.23585321383535	0	lncRNA	14033-1_{1..1005}	lnc-ABT1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABT1-3:5	chr6	 26687347	 26688351	+	lnc-ABT1-3	lnc-ABT1-3:5	XLOC_005214	linc-HIST1H2AG-4	NA	NA	NA	inter
CUST_20217_PI429285431	3.6271234	A	3.3152351	P	1.24133137829436	0	lncRNA	21861-1_{1..545}	lnc-SHF-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SHF-3:2	chr15	 45571395	 45571939	-	lnc-SHF-3	lnc-SHF-3:2	ENSG00000259520.1	CTD-2651B20.3	SLC28A2	NA	chr15:45561395-45568132	inter
CUST_42082_PI429285431	8.087072	P	7.959408	P	1.09252326358368	0	lncRNA	44011-1_{1..79}	ENST00000579080 ncrna:miRNA chromosome:GRCh37:6:53141791:53141869:1 gene:ENSG00000264056 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579080 ncrna:miRNA chromosome:GRCh37:6:53141791:53141869:1 gene:ENSG00000264056 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 53141791	 53141869	+	ENSG00000264056	ENST00000579080	NA	NA	ELOVL5	NA	chr6:53132196-53151869	inner
CUST_40078_PI429285431	3.7738357	P	4.0766006	P	0.810697219450474	0	lncRNA	40925-1_{1..1742}	n407371|NR_026824|lncRNA|Homosapiens||RefGeneNoncode|NR_026824||2.2215000|-0.1982695	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407371|NR_026824|lncRNA|Homosapiens||RefGeneNoncode|NR_026824||2.2215000|-0.1982695	chr19	 43341148	 43342889	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8186_PI429285431	7.7182007	P	7.8737073	P	0.897817050538334	0	lncRNA	9785-1_{1..336}	lnc-RASL11B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASL11B-3:2	chr4	 53578991	 53579326	+	lnc-RASL11B-3	lnc-RASL11B-3:2	ENSG00000226950	KIAA0114	NA	NA	NA	inter
CUST_4776_PI429285431	6.462532	P	6.8214393	P	0.779754943955706	0	lncRNA	4721-1_{1..3000}	"transcript_id ""ENST00000557440.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557440.1"" | genecode_v17"	chr14	 39218562	 39221561	-	ENSG00000259070.1	ENST00000557440.1	LINC00639	LINC00639-003	NA	"hg19_refFlat_ZFP41:range=chr8:144332014-1443326105'pad=0,hg19_refFlat_ZFP41:range=chr8:144332014-1443326105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80"	NA	inter
CUST_26177_PI429285431	9.477647	P	9.526974	P	0.966387031797361	0	lncRNA	27688-1_{1..191}	lnc-E2F3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-E2F3-2:1	chr6	 20294607	 20294797	+	lnc-E2F3-2	lnc-E2F3-2:1	ENSG00000227803.1	RP11-239H6.2	NA	"hg19_refFlat_MBOAT1:range=chr6:20102517-202124655'pad=0,hg19_refFlat_MBOAT1:range=chr6:20102517-202124655'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40"	NA	inter
CUST_16332_PI429285431	7.514519	P	6.988458	P	1.43999220294619	0	lncRNA	18033-1_{1..739}	lnc-AL035696.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL035696.1-4:1	chr6	   236633	   237371	+	lnc-AL035696.1-4	lnc-AL035696.1-4:1	XLOC_005119	linc-DUSP22-1	NA	NA	NA	inter
CUST_36991_PI429285431	0.89291996	A	0.9023764	A	0.993466730493465	0	lncRNA	38136-1_{1..733}	n345452|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1001|NULL|-1.4369300|-0.2103792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345452|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1001|NULL|-1.4369300|-0.2103792	chr1	 95099360	 95100092	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47983_PI429285431	0.9237261	A	0.9260428	A	0.998395474556357	0	lncRNA	51871-1_{1..1663}	"gi|410172893|ref|XR_172046.1| PREDICTED: Homo sapiens uncharacterized LOC100506411 (LOC100506411), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|410172893|ref|XR_172046.1| PREDICTED: Homo sapiens uncharacterized LOC100506411 (LOC100506411), misc_RNA"	NA	NA	NA	NA	NA	XR_172046.1	NA	NA	NA	NA	NA	Unknown
CUST_35350_PI429285431	3.1094754	P	2.8665109	P	1.18342190125712	0	lncRNA	36761-1_{1..687}	n342394|AF086325|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4886|NULL|-0.0802890|-0.4339284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342394|AF086325|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4886|NULL|-0.0802890|-0.4339284	chr19	 44971328	 44972014	+	NA	NA	NA	NA	ZNF180	NA	chr19:44979856-44982014	inter
LNCA_21_P0003195	1.2987869	A	0.9278665	A	1.29317757947259	0	lncRNA	TCONS_00006718	NA	NA	NA	NA	XLOC_003346	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003346), lincRNA [TCONS_00006718]"	chr3:181782655-181782596	hs|3q26.33	Agilent_HUMAN_G3V2	TCONS_00006718	TCONS_00006718	chr3	181782596	181782655	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43709_PI429285431	5.6179514	P	4.140855	P	2.78387879452546	0	lncRNA	48455-4_{9001..10022}	"gi|323510632|ref|NR_024171.2| Homo sapiens Mdm4 p53 binding protein homolog (mouse) (MDM4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|323510632|ref|NR_024171.2| Homo sapiens Mdm4 p53 binding protein homolog (mouse) (MDM4), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_024171.2	NA	NA	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20"	NA	Unknown
LNCA_21_P0004713	0.90390635	A	0.9262465	A	0.984634264353489	0	lncRNA	ENST00000430250	NA	NA	NA	NA	XLOC_005555	NA	ENST00000430250	NA	NA	"BROAD Institute lincRNA (XLOC_005555), lincRNA [TCONS_00011423]"	chr6:170139029-170139088	hs|6q27	Agilent_HUMAN_G3V2	ENST00000430250	ENST00000430250	chr6	170139029	170139088	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013819	0.9030448	A	0.9248876	A	0.984973762485347	0	lncRNA	THC2750108	NA	NA	NA	NA	XLOC_l2_015760	NA	NA	THC2750108	NA	"BROAD Institute lincRNA (XLOC_l2_015760), lincRNA [TCONS_l2_00030535]"	chrX:073466010-073465951	hs|Xq13.2	Agilent_HUMAN_G3V2	THC2750108	THC2750108	chrX	 73465951	 73466010	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10259_PI429285431	3.2860143	P	3.309754	P	0.983679539588312	0	lncRNA	11786-1_{1..1741}	lnc-PKDCC-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PKDCC-2:4	chr2	 42119669	 42121409	+	lnc-PKDCC-2	lnc-PKDCC-2:4	XLOC_001441	linc-PKDCC-2	NA	NA	NA	inter
CUST_39374_PI429285431	10.270704	P	10.294262	P	0.983803436755141	0	lncRNA	40337-1_{1..1009}	n386501|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mnd.1||3.2139000|-0.1790428	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386501|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mnd.1||3.2139000|-0.1790428	chr9	 45441936	 45442944	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006627	0.8984778	A	0.917856	A	0.986657861335267	0	lncRNA	ENST00000548010	NA	DQ372722	NA	Hs.642589	XLOC_008918	NA	ENST00000548010	NA	NA	"BROAD Institute lincRNA (XLOC_008918), lincRNA [TCONS_00017748]"	chr10:101287709-101287650	hs|10q24.2	Agilent_HUMAN_G3V2	ENST00000548010	ENST00000548010	chr10	101287650	101287709	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_388_PI429201921	6.7976522	P	10.292845	M	0.0886833574352005	0	lncRNA	246-2_{3001..6000}	TC03003065.hg.1	 TCONS_l2_00019491-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125626357-125633319 // chr3 // 100 // 100 // 0 // --- // 0///TCONS_l2_00019490-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125623901-125627019 // chr3 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00019493-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125627284-125627714 // chr3 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00020180-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125626847-125629115 // chr3 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00019492-XLOC_l2_010330 // Broad TUCP // linc-OSBPL11-4 chr3:-:125626797-125627926 // chr3 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr3:-:125623901-125627019	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00019490-XLOC_l2_010330	linc-OSBPL11-4	chr3	125623901	125627019	-	NA	NA	NA	NA	NFIA	NA	chr1:61704617-61729182	Unknown
CUST_8725_PI429285431	2.0543783	A	2.979268	A	0.526720786419648	0	lncRNA	10268-1_{1..1504}	lnc-LGALSL-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,UCSC,"	>lnc-LGALSL-2:6	chr2	 64479554	 64481057	+	lnc-LGALSL-2	lnc-LGALSL-2:6	ENSG00000225889	AC074289.1	NA	NA	NA	inter
CUST_22242_PI429285431	5.036418	P	4.7462735	P	1.22276274319109	0	lncRNA	23843-1_{1..436}	lnc-SLC39A11-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC39A11-1:13	chr17	 70466199	 70466634	-	lnc-SLC39A11-1	lnc-SLC39A11-1:13	ENSG00000227036.2	LINC00511	NA	NA	NA	inter
CUST_25269_PI429285431	2.543151	A	2.391659	A	1.11071755529253	0	lncRNA	26799-1_{1..826}	lnc-DCAF4L2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DCAF4L2-2:1	chr8	 88767880	 88768705	-	lnc-DCAF4L2-2	lnc-DCAF4L2-2:1	ENSG00000253500.1	AF121898.3	NA	NA	NA	inter
CUST_41426_PI429285431	0.9117361	A	0.9260569	A	0.990122682173882	0	lncRNA	42585-1_{1..99}	ENST00000390161 ncrna:miRNA chromosome:GRCh37:X:132880775:132880873:-1 gene:ENSG00000211495 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390161 ncrna:miRNA chromosome:GRCh37:X:132880775:132880873:-1 gene:ENSG00000211495 gene_biotype:miRNA transcript_biotype:miRNA	chrX	132880775	132880873	-	ENSG00000211495	ENST00000390161	NA	NA	GPC3	NA	chrX:132870775-132890873	inner
CUST_21334_PI429285431	5.237618	P	5.005948	P	1.17419335718469	0	lncRNA	22958-1_{1..311}	lnc-DNAJB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DNAJB2-1:1	chr2	220168719	220169029	+	lnc-DNAJB2-1	lnc-DNAJB2-1:1	ENSG00000230432.1	AC114803.3	PTPRN	"hg19_refFlat_PTPRN:range=chr2:220154948-2201740545'pad=0,hg19_refFlat_PTPRN:range=chr2:220154948-2201740545'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_PTPRN:range=chr2:220154948-2201721755'pad=0,hg19_refFlat_PTPRN:range=chr2:220154948-2201721755'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50chr2:220158719-220174295"	NA	inner
CUST_27466_PI429285431	3.8180387	P	3.9491153	P	0.913149764970472	0	lncRNA	29038-1_{1..1567}	n324644|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331464|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331464|-1.1373400|-0.3800236	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324644|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331464|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331464|-1.1373400|-0.3800236	chr22	 48612267	 48613833	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007547	5.356181	P	5.339834	P	1.01139531449491	0	lncRNA	TCONS_00020392	NA	NA	NA	NA	XLOC_009723	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009723), lincRNA [TCONS_00020392]"	chr12:46781388-46781584	hs|12q13.11	Agilent_HUMAN_G3V2	TCONS_00020392	TCONS_00020392	chr12	 46781388	 46781584	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25265_PI429285431	0.9048687	A	0.9177015	A	0.99114442450675	0	lncRNA	26795-2_{3001..3524}	lnc-YES1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YES1-1:1	chr18	   906145	   906668	-	lnc-YES1-1	lnc-YES1-1:1	ENSG00000265179.1	RP11-672L10.2	ADCYAP1	"hg19_refFlat_ADCYAP1:range=chr18:905388-9096365'pad=0,hg19_refFlat_ADCYAP1:range=chr18:905388-9096365'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20chr18:904944-912173"	NA	inner
LNCA_21_P0009789	3.3616107	P	3.5092213	P	0.902744355676011	0	lncRNA	TCONS_00027541	NA	NA	NA	NA	XLOC_013072	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013072), lincRNA [TCONS_00027541]"	chr19:40019404-40019463	hs|19q13.2	Agilent_HUMAN_G3V2	TCONS_00027541	TCONS_00027541	chr19	 40019404	 40019463	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48431_PI429285431	0.8794604	A	1.1336094	A	0.838481582488346	0	lncRNA	52283-1_{1..542}	hg19_lincRNAsTranscripts_TCONS_l2_00001520 range=chr1:149698476-149719395 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001520 range=chr1:149698476-149719395 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	149698476	149699017	-	NA	NA	NA	NA	HIST2H2BF	NA	chr1:149728271-149729395	inter
CUST_25757_PI429285431	1.4175422	A	1.6245393	A	0.866338597848791	0	lncRNA	27283-1_{1..1401}	lnc-GPER-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPER-3:2	chr7	  1203797	  1205197	+	lnc-GPER-3	lnc-GPER-3:2	ENSG00000229043.1	AC091729.9	ZFAND2A	NA	chr7:1193797-1199855	inter
CUST_39754_PI429285431	8.432968	P	6.8164663	P	3.06630604890933	0	lncRNA	40676-1_{1..1362}	n405893|NR_003130|lncRNA|Homosapiens||RefGeneNoncode|NR_003130||7.7769300|-0.1174490	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405893|NR_003130|lncRNA|Homosapiens||RefGeneNoncode|NR_003130||7.7769300|-0.1174490	chr1	 92100567	 92101928	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26465_PI429285431	3.1236904	A	3.7712877	P	0.638342540338179	0	lncRNA	27973-1_{1..641}	lnc-RP11-467M13.1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-467M13.1.1-4:1	chr16	 17232099	 17232739	+	lnc-RP11-467M13.1.1-4	lnc-RP11-467M13.1.1-4:1	ENSG00000261448.1	CTD-2576D5.4	XYLT1	"hg19_refFlat_XYLT2:range=chr17:48423502-484376525'pad=0,hg19_refFlat_XYLT2:range=chr17:48423502-484376525'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_XYLT1:range=chr16:17202552-175646535'pad=0,hg19_refFlat_XYLT1:range=chr16:17202552-175646535'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30chr16:17222099-17242593"	NA	inner
CUST_13430_PI429285431	2.0454447	A	2.1872773	A	0.906367100513045	0	lncRNA	15069-1_{1..518}	lnc-LRRIQ1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRIQ1-1:1	chr12	 85386349	 85386866	+	lnc-LRRIQ1-1	lnc-LRRIQ1-1:1	XLOC_009819	linc-LRRIQ1	NA	NA	NA	inter
CUST_12399_PI429285431	0.89914495	A	0.9595313	A	0.959007265269486	0	lncRNA	14011-3_{6001..7961}	lnc-TCF12-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF12-1:3	chr15	 57605740	 57607700	+	lnc-TCF12-1	lnc-TCF12-1:3	XLOC_011264	linc-CGNL1-2	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.61;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.81;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50"	NA	inter
CUST_31813_PI429285431	1.4241643	A	1.0235378	A	1.32008104036891	0	lncRNA	33550-1_{1..2127}	n338356|AK096329|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|751|NULL|-0.9135030|-0.3259324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338356|AK096329|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|751|NULL|-0.9135030|-0.3259324	chr1	170429593	170431719	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23461_PI429285431	3.6676364	P	3.9415905	P	0.827049680987085	0	lncRNA	25028-1_{1..586}	lnc-HSF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSF2-1:1	chr6	122909513	122910098	+	lnc-HSF2-1	lnc-HSF2-1:1	ENSG00000240283.1	RP11-574H13.2	PKIB	NA	chr6:122899513-122920009	inner
CUST_13076_PI429285431	2.8226504	A	0.88676894	A	3.826118243895	0	lncRNA	14703-1_{1..568}	lnc-GNAQ-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNAQ-2:5	chr9	 81750994	 81751561	-	lnc-GNAQ-2	lnc-GNAQ-2:5	XLOC_007745	linc-GNAQ-5	NA	NA	NA	inter
CUST_41413_PI429285431	1.2480764	A	1.5358264	A	0.819178638402158	0	lncRNA	42548-1_{1..70}	ENST00000584505 ncrna:miRNA chromosome:GRCh37:18:44906867:44906936:1 gene:ENSG00000266582 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584505 ncrna:miRNA chromosome:GRCh37:18:44906867:44906936:1 gene:ENSG00000266582 gene_biotype:miRNA transcript_biotype:miRNA	chr18	 44906867	 44906936	+	ENSG00000266582	ENST00000584505	NA	NA	NA	NA	NA	inter
CUST_15158_PI429285431	2.4300706	A	2.5074623	A	0.947769605294784	0	lncRNA	16820-1_{1..2424}	lnc-FAM20C-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM20C-3:3	chr7	   153412	   155835	+	lnc-FAM20C-3	lnc-FAM20C-3:3	XLOC_005953	linc-FAM20C-2	NA	NA	NA	inter
LNCA_21_P0010516	0.873855	A	0.87681043	A	0.997953548870482	0	lncRNA	TCONS_l2_00000114	NA	NA	NA	NA	XLOC_l2_000080	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000080), lincRNA [TCONS_l2_00000114]"	chr1:16976751-16977291	hs|1p36.13	Agilent_HUMAN_G3V2	TCONS_l2_00000114	TCONS_l2_00000114	chr1	 16976751	 16977291	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16937_PI429285431	0.87348783	A	0.8757335	A	0.998444631013075	0	lncRNA	18649-1_{1..218}	lnc-PCDH20-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH20-6:2	chr13	 63902187	 63902404	-	lnc-PCDH20-6	lnc-PCDH20-6:2	XLOC_010640	linc-PCDH20-7	NA	NA	NA	inter
CUST_27241_PI429285431	1.7310455	A	0.98272055	A	1.67984130767308	0	lncRNA	28790-1_{1..479}	n324383|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042327|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042327|-0.9797830|-0.3141982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324383|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042327|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042327|-0.9797830|-0.3141982	chr6	134969129	134969607	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38960_PI429285431	6.113474	P	6.406627	P	0.816116491168075	0	lncRNA	39945-1_{1..1890}	n385140|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ths.2||-0.2866080|-0.3794590	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n385140|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ths.2||-0.2866080|-0.3794590	chr7	 41733513	 41735402	+	NA	NA	NA	NA	INHBA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30chr7:41728601-41742706"	NA	inter
CUST_52069_PI429285431	3.56038	P	3.22897	P	1.25824250139973	0	lncRNA	55597-1_{1..763}	hg19_lincRNAsTranscripts_TCONS_l2_00017850 range=chr22:16156627-16193002 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017850 range=chr22:16156627-16193002 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 16156627	 16157389	-	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_48579_PI429285431	0.8737028	A	0.87501276	A	0.999092417022148	0	lncRNA	52427-1_{1..440}	hg19_lincRNAsTranscripts_TCONS_l2_00014411 range=chr2:8029560-8039803 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014411 range=chr2:8029560-8039803 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	  8029560	  8029999	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14244_PI429285431	1.3469565	A	0.87457323	A	1.3873995002241	0	lncRNA	15902-1_{1..827}	lnc-OLFM1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OLFM1-2:1	chr9	138056714	138057540	+	lnc-OLFM1-2	lnc-OLFM1-2:1	XLOC_007605	linc-KIAA0649-4	NA	NA	NA	inter
CUST_44036_PI429285431	3.5086544	P	4.1831183	P	0.626565005235393	0	lncRNA	48717-2_{3001..3969}	"gi|362999020|ref|NR_045623.1| Homo sapiens nucleic acid binding protein 1 (NABP1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|362999020|ref|NR_045623.1| Homo sapiens nucleic acid binding protein 1 (NABP1), transcript variant 4, non-coding RNA"	Chr2	192545862	192546830	+	64859	NR_045623.1	NA	NA	NA	NA	NA	inter
CUST_44216_PI429285431	0.90354425	A	0.89365524	A	1.00687808552376	0	lncRNA	48868-1_{1..3000}	"gi|373432660|ref|NR_046079.1| Homo sapiens sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B (SEMA5B), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373432660|ref|NR_046079.1| Homo sapiens sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B (SEMA5B), transcript variant 5, non-coding RNA"	Chr3	122628040	122631039	-	54437	NR_046079.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001525	1.8385658	A	0.87599266	A	1.94878257691001	0	lncRNA	THC2666840	NA	NA	NA	NA	XLOC_000889	NA	NA	THC2666840	NA	"BROAD Institute lincRNA (XLOC_000889), lincRNA [TCONS_00001546]"	chr1:084542210-084542151	hs|1p31.1	Agilent_HUMAN_G3V2	THC2666840	THC2666840	chr1	 84542151	 84542210	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12274_PI429285431	4.709577	P	4.7522354	P	0.97086432291442	0	lncRNA	13883-1_{1..486}	lnc-C2orf40-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2orf40-5:1	chr2	107417226	107417711	+	lnc-C2orf40-5	lnc-C2orf40-5:1	XLOC_001616	linc-RGPD4-4	ST6GAL2	NA	chr2:107418056-107427250	inter
LNCA_21_P0011551	5.5737967	P	5.661773	P	0.940841563144579	0	lncRNA	TCONS_l2_00010943	NA	NA	NA	NA	XLOC_l2_005874	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005874), lincRNA [TCONS_l2_00010943]"	chr17:66202335-66208743	hs|17q24.2	Agilent_HUMAN_G3V2	TCONS_l2_00010943	TCONS_l2_00010943	chr17	 66202335	 66208743	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33154_PI429285431	1.1331998	A	0.8750772	A	1.19592142167428	0	lncRNA	34750-1_{1..1240}	n339846|BC045816|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2294|NULL|-1.2876300|-0.3416970	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339846|BC045816|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2294|NULL|-1.2876300|-0.3416970	chr18	 37646249	 37647488	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7865_PI429285431	3.1470692	P	3.2113137	P	0.956446051153199	0	lncRNA	9487-2_{3001..4235}	lnc-AC009336.1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AC009336.1-2:6	chr2	177045439	177046673	-	lnc-AC009336.1-2	lnc-AC009336.1-2:6	ENSG00000224189	AC009336.23	HOXD3	NA	chr2:177032439-177037826	inter
LNCA_21_P0002330	0.8749399	A	0.8781177	A	0.997799741015872	0	lncRNA	TCONS_00003966	NA	NA	NA	NA	XLOC_001781	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001781), lincRNA [TCONS_00003966]"	chr2:187002156-187002215	hs|2q32.1	Agilent_HUMAN_G3V2	TCONS_00003966	TCONS_00003966	chr2	187002156	187002215	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011571	0.8747517	A	0.8780384	A	0.997724426214216	0	lncRNA	TCONS_l2_00011116	NA	NA	NA	NA	XLOC_l2_006003	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006003), lincRNA [TCONS_l2_00011116]"	chr17:16878507-16878448	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00011116	TCONS_l2_00011116	chr17	 16878448	 16878507	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49084_PI429285431	1.245373	A	1.1938342	A	1.03636974191834	0	lncRNA	52908-1_{1..1136}	hg19_lincRNAsTranscripts_TCONS_l2_00021055 range=chr4:9152101-9154751 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021055 range=chr4:9152101-9154751 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  9152101	  9153236	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80"	NA	inter
CUST_52065_PI429285431	1.198911	A	2.1388602	A	0.521251234331652	0	lncRNA	55594-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00017926 range=chr22:23701773-23725562 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017926 range=chr22:23701773-23725562 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 23704773	 23707772	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7862_PI429285431	1.0840967	A	2.31306	A	0.426623901590769	0	lncRNA	9484-1_{1..1164}	lnc-C17orf80-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C17orf80-1:1	chr17	 71273955	 71275118	+	lnc-C17orf80-1	lnc-C17orf80-1:1	ENSG00000251071	XLOC_012301	CDC42EP4	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20chr17:71279763-71284712"	NA	inter
CUST_22327_PI429285431	8.46958	P	8.131102	P	1.26442196284687	0	lncRNA	23926-1_{1..1318}	lnc-AC103810.2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC103810.2-1:2	chr17	 62777552	 62778869	-	lnc-AC103810.2-1	lnc-AC103810.2-1:2	ENSG00000215769.4	RP13-104F24.2	NA	NA	NA	inter
LNCA_21_P0002538	0.86796945	A	0.8691281	A	0.999197207429764	0	lncRNA	TCONS_00004572	NA	NA	NA	NA	XLOC_002478	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002478), lincRNA [TCONS_00004572]"	chr2:214148781-214140929	hs|2q34	Agilent_HUMAN_G3V2	TCONS_00004572	TCONS_00004572	chr2	214140929	214148781	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7639_PI429285431	0.92692876	A	1.129632	A	0.868920902371318	0	lncRNA	9270-1_{1..1265}	lnc-TMEM69-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM69-1:1	chr1	 46164119	 46165383	+	lnc-TMEM69-1	lnc-TMEM69-1:1	ENSG00000251202	ENST00000513402	IPP	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00chr1:46159996-46175067"	NA	inner
CUST_34531_PI429285431	2.1846712	A	1.2425945	A	1.92129186949963	0	lncRNA	35993-1_{1..2628}	n341411|CR598413|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3881|NULL|-1.0975000|-0.2670553	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341411|CR598413|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3881|NULL|-1.0975000|-0.2670553	chr8	 10344316	 10346943	+	NA	NA	NA	NA	PRSS55	NA	chr8:10334316-10356944	inter
CUST_43398_PI429285431	7.1184387	P	7.6807537	P	0.677214608639166	0	lncRNA	48211-1_{1..704}	"gi|297206715|ref|NR_033691.1| Homo sapiens chromosome 1 open reading frame 213 (C1orf213), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|297206715|ref|NR_033691.1| Homo sapiens chromosome 1 open reading frame 213 (C1orf213), transcript variant 2, non-coding RNA"	Chr1	 23695711	 23696414	+	148898	NR_033691.1	NA	NA	NA	NA	NA	inter
CUST_27050_PI429285431	0.9032719	A	0.92218494	A	0.986976035138223	0	lncRNA	28584-1_{1..676}	n324161|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051554|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051554|-1.2259700|-0.4764034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324161|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051554|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051554|-1.2259700|-0.4764034	chr9	  3674075	  3674750	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012576	2.8009584	A	2.0863845	A	1.64099847711787	0	lncRNA	THC2648740	NA	NA	NA	NA	XLOC_l2_010602	NA	NA	THC2648740	NA	"BROAD Institute lincRNA (XLOC_l2_010602), lincRNA [TCONS_l2_00021545]"	chr4:023042578-023042637	hs|4p15.2	Agilent_HUMAN_G3V2	THC2648740	THC2648740	chr4	 23042578	 23042637	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011223	4.373721	P	4.432617	P	0.959998462248268	0	lncRNA	ENST00000440160	NA	NA	NA	NA	XLOC_l2_003936	NA	ENST00000440160	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003936), lincRNA [TCONS_l2_00007522]"	chr13:35009646-35009587	hs|13q13.2	Agilent_HUMAN_G3V2	ENST00000440160	ENST00000440160	chr13	 35009587	 35009646	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46033_PI429285431	6.439422	P	5.7467084	P	1.61632083802654	0	lncRNA	50313-1_{1..3000}	"gi|226246614|ref|NR_027450.1| Homo sapiens family with sequence similarity 186, member B (FAM186B), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226246614|ref|NR_027450.1| Homo sapiens family with sequence similarity 186, member B (FAM186B), transcript variant 2, non-coding RNA"	Chr12	 49976658	 49979657	-	84070	NR_027450.1	NA	NA	NA	NA	NA	inter
LNCA_24_P264063	6.6076965	P	6.6087565	P	0.999265533841016	0	lncRNA	XR_110528	XR_110528	XR_110528	   729173	Hs.638417	LOC729173	uncharacterized LOC729173	ENST00000319763	THC2487786	NA	"PREDICTED: Homo sapiens hypothetical LOC729173 (LOC729173), miscRNA [XR_110528]"	chr11:120041840-120041899	hs|11q23.3	Agilent_HUMAN_G3V2	XR_110528	XR_110528	chr11	120041840	120041899	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009280	0.90372	A	0.92594	A	0.984716269718388	0	lncRNA	TCONS_00025508	NA	NA	NA	NA	XLOC_012318	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012318), lincRNA [TCONS_00025508]"	chr17:75663748-75663807	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_00025508	TCONS_00025508	chr17	 75663748	 75663807	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29229_PI429285431	8.763232	P	8.656596	P	1.07671468080408	0	lncRNA	30980-1_{1..426}	n326758|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007987|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007987|-0.9979760|-0.0489065	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326758|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007987|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007987|-0.9979760|-0.0489065	chr1	   443689	   444114	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012948	0.90238214	A	0.9237785	A	0.985278608428711	0	lncRNA	ENST00000510435	NA	NA	NA	NA	XLOC_l2_011693	NA	ENST00000510435	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011693), lincRNA [TCONS_l2_00023491]"	chr5:98834961-98835020	hs|5q21.1	Agilent_HUMAN_G3V2	ENST00000510435	ENST00000510435	chr5	 98834961	 98835020	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2398_PI429285431	1.278125	A	0.8960806	A	1.30318725529153	0	lncRNA	2390-1_{1..2193}	"transcript_id ""ENST00000506723.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506723.2"" | genecode_v17"	chr5	151998525	152000717	-	ENSG00000249484.4	ENST00000506723.2	AC091969.1	AC091969.1-002	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10"	NA	inter
LNCA_21_P0005796	1.7211851	A	0.9215736	A	1.74063233263289	0	lncRNA	TCONS_00014927	NA	NA	NA	NA	XLOC_006999	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006999), lincRNA [TCONS_00014927]"	chr8:9117580-9112382	hs|8p23.1	Agilent_HUMAN_G3V2	TCONS_00014927	TCONS_00014927	chr8	  9112382	  9117580	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39290_PI429285431	6.05188	P	6.4109983	P	0.779640909972339	0	lncRNA	40260-2_{3001..3684}	n386283|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gjw.1||-1.1450400|-0.3158381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n386283|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gjw.1||-1.1450400|-0.3158381	chr20	 58716536	 58717219	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41830_PI429285431	0.9111061	A	0.95682317	A	0.968808165632343	0	lncRNA	43431-1_{1..87}	ENST00000385014 ncrna:miRNA chromosome:GRCh37:19:54238131:54238217:1 gene:ENSG00000207747 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385014 ncrna:miRNA chromosome:GRCh37:19:54238131:54238217:1 gene:ENSG00000207747 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54238131	 54238217	+	ENSG00000207747	ENST00000385014	NA	NA	NA	NA	NA	inter
LNCA_21_P0003174	0.87986344	A	0.89013374	A	0.992906449357306	0	lncRNA	TCONS_00006657	NA	NA	NA	NA	XLOC_003250	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003250), lincRNA [TCONS_00006657]"	chr3:129993985-129993926	hs|3q22.1	Agilent_HUMAN_G3V2	TCONS_00006657	TCONS_00006657	chr3	129993926	129993985	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10165_PI429285431	0.8904452	A	1.8966283	A	0.497861686297646	0	lncRNA	11690-1_{1..291}	lnc-KCNMB2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KCNMB2-5:2	chr3	177260987	177261277	+	lnc-KCNMB2-5	lnc-KCNMB2-5:2	XLOC_002931	linc-KCNMB2-5	NA	NA	NA	inter
CUST_21790_PI429285431	1.948673	A	2.178211	A	0.852907978171128	0	lncRNA	23400-1_{1..432}	lnc-ABCB5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ABCB5-1:1	chr7	 21061676	 21062107	+	lnc-ABCB5-1	lnc-ABCB5-1:1	ENSG00000232790.1	AC006481.1	NA	NA	NA	inter
CUST_27000_PI429285431	0.88755333	A	0.96906734	A	0.945065344549425	0	lncRNA	28529-1_{1..3000}	n324103|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000143026|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000143026|-1.2197600|-0.4164186	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324103|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000143026|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000143026|-1.2197600|-0.4164186	chr9	 42353043	 42356042	-	NA	NA	NA	NA	LOC100289006	"hg19_refFlat_GTF2I:range=chr7:74103463-741731685'pad=0,hg19_refFlat_GTF2I:range=chr7:74103463-741731685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_PARG:range=chr10:51027386-513710705'pad=0,hg19_refFlat_PARG:range=chr10:51027386-513710705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50chr9:42343043-42366815"	NA	inter
CUST_46923_PI429285431	9.29157	P	8.628853	P	1.58306116697242	0	lncRNA	51037-2_{3001..4091}	"gi|289577112|ref|NR_033345.1| Homo sapiens golgi-associated, gamma adaptin ear containing, ARF binding protein 3 (GGA3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|289577112|ref|NR_033345.1| Homo sapiens golgi-associated, gamma adaptin ear containing, ARF binding protein 3 (GGA3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_033345.1	NA	NA	NA	NA	NA	Unknown
CUST_18857_PI429285431	3.1871667	P	3.5947578	P	0.753881095424157	0	lncRNA	20549-1_{1..1387}	lnc-C3orf32-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C3orf32-2:4	chr3	  8543157	  8544543	-	lnc-C3orf32-2	lnc-C3orf32-2:4	ENSG00000227110	AC087859.1	LMCD1	NA	chr3:8543511-8553332	inter
CUST_14749_PI429285431	2.942749	A	2.7451067	A	1.14682264720399	0	lncRNA	16413-1_{1..1735}	lnc-TCF4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF4-3:1	chr18	 53704272	 53706006	-	lnc-TCF4-3	lnc-TCF4-3:1	XLOC_012850	linc-TCF4-2	NA	NA	NA	inter
LNCA_21_P0011005	2.7610054	A	3.4488137	P	0.6207962293979	0	lncRNA	TCONS_l2_00004945	NA	NA	NA	NA	XLOC_l2_002603	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002603), lincRNA [TCONS_l2_00004945]"	chr11:29319974-29319915	hs|11p14.1	Agilent_HUMAN_G3V2	TCONS_l2_00004945	TCONS_l2_00004945	chr11	 29319915	 29319974	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9398_PI429285431	7.8471637	P	8.036161	P	0.877215190437223	0	lncRNA	10901-2_{3001..3842}	lnc-BANP-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BANP-1:3	chr16	 88221779	 88222620	+	lnc-BANP-1	lnc-BANP-1:3	XLOC_011826	linc-ZNF469-3	NA	NA	NA	inter
CUST_40266_PI429285431	2.1133327	A	0.89767563	A	2.32246534598616	0	lncRNA	41076-1_{1..656}	n408200|NR_028345|lncRNA|Homosapiens||RefGeneNoncode|NR_028345||-1.2490700|-0.3570981	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408200|NR_028345|lncRNA|Homosapiens||RefGeneNoncode|NR_028345||-1.2490700|-0.3570981	chrX	139791923	139792578	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_34491_PI429285431	3.1961977	P	2.9008532	A	1.22717797912201	0	lncRNA	35958-1_{1..209}	n341367|Y08836|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3836|NULL|-1.3451500|-0.3527218	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341367|Y08836|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3836|NULL|-1.3451500|-0.3527218	chr7	151845595	151845803	+	NA	NA	NA	NA	MLL3	"hg19_refFlat_MLL3:range=chr7:151833917-1521328715'pad=0,hg19_refFlat_MLL3:range=chr7:151833917-1521328715'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80chr7:151835595-151855802"	NA	inner
CUST_24665_PI429285431	2.7373557	A	3.9181342	P	0.441113402467105	0	lncRNA	26213-1_{1..525}	lnc-TAF4B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TAF4B-4:1	chr18	 24510634	 24511158	+	lnc-TAF4B-4	lnc-TAF4B-4:1	ENSG00000260372.2	CHST9-AS1	CHST9	NA	chr18:24500634-24520721	inner
CUST_34507_PI429285431	3.6507437	P	1.8758467	A	3.42213577350109	0	lncRNA	35971-1_{1..2572}	n341383|AX748351|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3852|NULL|-0.6235930|-0.2144108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341383|AX748351|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3852|NULL|-0.6235930|-0.2144108	chr7	157859627	157862198	-	NA	NA	NA	NA	PTPRN2	"hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80chr7:157849627-157872199"	NA	inner
LNCA_21_P0006924	0.87615836	A	0.87750924	A	0.999064079583702	0	lncRNA	TCONS_00018356	NA	NA	NA	NA	XLOC_008642	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008642), lincRNA [TCONS_00018356]"	chr10:121945587-121946640	hs|10q26.12	Agilent_HUMAN_G3V2	TCONS_00018356	TCONS_00018356	chr10	121945587	121946640	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38520_PI429285431	0.93031776	A	0.8802585	A	1.03530744915523	0	lncRNA	39531-1_{1..1281}	n383172|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002hpx.2||2.5829000|-0.2805056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383172|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002hpx.2||2.5829000|-0.2805056	chr17	 36364602	 36365882	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30512_PI429285431	8.539181	P	8.378435	P	1.11786502301247	0	lncRNA	32292-1_{1..677}	n335669|CR614518|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000293713|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000293713|-1.1258100|-0.2219215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335669|CR614518|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000293713|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000293713|-1.1258100|-0.2219215	chr11	 57467952	 57468628	+	NA	NA	NA	NA	ZDHHC5	NA	chr11:57457952-57468659	inner
CUST_1642_PI429285431	5.044324	P	5.4036703	P	0.779517707163051	0	lncRNA	1627-1_{1..525}	"transcript_id ""ENST00000438608.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438608.1"" | genecode_v17"	chr3	195426019	195426543	+	ENSG00000242086.3	ENST00000438608.1	AC069513.3	AC069513.3-006	MUC20	NA	chr3:195447753-195448552	inter
LNCA_21_P0001336	2.6407988	A	2.612412	A	1.01987108329823	0	lncRNA	ENST00000479252	NA	BC036122	NA	NA	LRRC8C	"leucine rich repeat containing 8 family, member C"	ENST00000479252	NA	GO:0016020|GO:0005783|GO:0005789|GO:0016021	"BROAD Institute lincRNA (XLOC_000290), lincRNA [TCONS_00001023]"	chr1:90224460-90227581	hs|1p22.2	Agilent_HUMAN_G3V2	ENST00000479252	ENST00000479252	chr1	 90224460	 90227581	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17436_PI429285431	1.2490518	A	1.0931897	A	1.1140871557132	0	lncRNA	19160-1_{1..550}	lnc-CHMP2B-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHMP2B-2:3	chr3	 86768368	 86768917	+	lnc-CHMP2B-2	lnc-CHMP2B-2:3	XLOC_002725	linc-CHMP2B-2	NA	NA	NA	inter
CUST_31136_PI429285431	9.337999	P	9.306605	P	1.02199915256305	0	lncRNA	32931-1_{1..270}	n337463|EF036485|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394738|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394738|-0.6507280|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337463|EF036485|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394738|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394738|-0.6507280|-1.0000000	chr12	123465702	123465971	+	NA	NA	NA	NA	PITPNM2	NA	chr12:123468027-123476268	inner
CUST_16684_PI429285431	4.092391	P	3.2461479	A	1.79781316655319	0	lncRNA	18388-1_{1..333}	lnc-GPR63-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR63-3:1	chr6	 96462803	 96463135	-	lnc-GPR63-3	lnc-GPR63-3:1	XLOC_005788	linc-EPHA7-5	FUT9	NA	chr6:96452803-96472915	inter
CUST_37171_PI429285431	2.166335	A	0.9019818	A	2.40219488733998	0	lncRNA	38286-2_{3001..3114}	n345605|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1154|NULL|-1.2960200|-0.2802895	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345605|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1154|NULL|-1.2960200|-0.2802895	chr3	160983939	160984052	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00"	NA	inter
CUST_50857_PI429285431	5.8316646	P	6.2087793	P	0.769975955648325	0	lncRNA	54501-1_{1..368}	hg19_lincRNAsTranscripts_TCONS_l2_00005153 range=chr11:93342959-93343409 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005153 range=chr11:93342959-93343409 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr11	 93342959	 93343326	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006669	4.94876	P	4.218117	P	1.65937850128112	0	lncRNA	ENST00000434552	NA	NA	NA	NA	XLOC_008447	NA	ENST00000434552	NA	NA	"BROAD Institute lincRNA (XLOC_008447), lincRNA [TCONS_00017811]"	chr10:34206594-34206653	hs|10p11.22	Agilent_HUMAN_G3V2	ENST00000434552	ENST00000434552	chr10	 34206594	 34206653	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_154_PI429285431	1.5937821	A	2.608764	A	0.494834536344923	0	lncRNA	145-1_{1..570}	"transcript_id ""ENST00000602973.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602973.1"" | genecode_v17"	chr1	  7758363	  7758932	-	ENSG00000270035.1	ENST00000602973.1	RP11-338N10.2	RP11-338N10.2-001	CAMTA1	NA	chr1:7748363-7768932	inner
CUST_24407_PI429285431	6.5078707	P	6.1130586	P	1.31477151011524	0	lncRNA	25960-1_{1..499}	lnc-SUFU-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SUFU-1:4	chr10	104229750	104230248	+	lnc-SUFU-1	lnc-SUFU-1:4	ENSG00000243628.1	RP11-18I14.7	ACTR1A	NA	chr10:104238986-104239834	inner
CUST_17176_PI429285431	1.4845946	A	5.175901	P	0.0774116011667513	0	lncRNA	18887-1_{1..864}	lnc-ZMAT4-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-ZMAT4-3:4	chr8	 40200797	 40201660	-	lnc-ZMAT4-3	lnc-ZMAT4-3:4	XLOC_007064	linc-ADAM2-3	NA	NA	NA	inter
CUST_8630_PI429285431	2.7060277	A	3.0416143	A	0.792461855996539	0	lncRNA	10182-1_{1..2363}	lnc-RTN4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RTN4-1:1	chr2	 55198860	 55201222	-	lnc-RTN4-1	lnc-RTN4-1:1	ENSG00000248316	ENST00000513537	EML6	NA	chr2:55188860-55199157	inner
CUST_42192_PI429285431	1.6291429	A	1.3223889	A	1.23692154800819	0	lncRNA	44260-1_{1..85}	ENST00000384864 ncrna:miRNA chromosome:GRCh37:11:64658827:64658911:-1 gene:ENSG00000207596 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384864 ncrna:miRNA chromosome:GRCh37:11:64658827:64658911:-1 gene:ENSG00000207596 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 64658827	 64658911	-	ENSG00000207596	ENST00000384864	NA	NA	ATG2A	NA	chr11:64662004-64668911	inter
CUST_26566_PI429285431	0.9116904	A	0.9277578	A	0.988924714598252	0	lncRNA	28070-1_{1..600}	lnc-BAZ1A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BAZ1A-1:3	chr14	 35451636	 35452235	-	lnc-BAZ1A-1	lnc-BAZ1A-1:3	ENSG00000258704.1	RP11-85K15.2	SRP54	NA	chr14:35452104-35461698	inter
CUST_12461_PI429285431	1.7423756	A	1.7318904	A	1.00729426127827	0	lncRNA	14073-1_{1..324}	lnc-SORL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SORL1-2:1	chr11	121777015	121777338	+	lnc-SORL1-2	lnc-SORL1-2:1	XLOC_009306	linc-UBASH3B-3	NA	NA	NA	inter
CUST_136_PI429285431	2.4701145	A	2.9273746	A	0.728368229364362	0	lncRNA	128-1_{1..561}	"transcript_id ""ENST00000413472.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000413472.1"" | genecode_v17"	chr1	  2976181	  2976741	-	ENSG00000177133.5	ENST00000413472.1	RP1-163G9.1	RP1-163G9.1-005	PRDM16	NA	chr1:2985742-2988315	inter
CUST_43712_PI429285431	4.4430466	P	3.529462	P	1.88372008390351	0	lncRNA	48459-1_{1..786}	"gi|310124615|ref|XR_110786.1| PREDICTED: Homo sapiens uncharacterized LOC100505630, transcript variant 1 (LOC100505630), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310124615|ref|XR_110786.1| PREDICTED: Homo sapiens uncharacterized LOC100505630, transcript variant 1 (LOC100505630), misc_RNA"	NA	NA	NA	NA	NA	XR_110786.1	NA	NA	NA	NA	NA	Unknown
CUST_51266_PI429285431	2.8851366	A	2.5194278	A	1.28851452471832	0	lncRNA	54873-1_{1..1250}	hg19_lincRNAsTranscripts_TCONS_l2_00008490 range=chr15:28990745-29004169 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008490 range=chr15:28990745-29004169 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28990745	 28991994	+	NA	NA	NA	NA	LOC653720	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50chr15:28980745-28983530"	NA	inter
CUST_47246_PI429285431	0.893628	A	0.90746486	A	0.990454866267762	0	lncRNA	51320-1_{1..3000}	"gi|225903417|ref|NR_026714.2| Homo sapiens family with sequence similarity 182, member B (FAM182B), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225903417|ref|NR_026714.2| Homo sapiens family with sequence similarity 182, member B (FAM182B), transcript variant 1, non-coding RNA"	Chr20	 25750234	 25753233	-	728882	NR_026714.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0003233	0.8869286	A	1.108668	A	0.857530922018658	0	lncRNA	TCONS_00006866	NA	NA	NA	NA	XLOC_002675	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002675), lincRNA [TCONS_00006866]"	chr3:58470402-58470461	hs|3p14.3	Agilent_HUMAN_G3V2	TCONS_00006866	TCONS_00006866	chr3	 58470402	 58470461	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_387_PI429285431	0.8803085	A	0.89029336	A	0.993102917250966	0	lncRNA	379-1_{1..529}	"transcript_id ""ENST00000445260.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445260.2"" | genecode_v17"	chr1	121154579	121155107	+	ENSG00000231429.2	ENST00000445260.2	RP11-343N15.2	RP11-343N15.2-001	NA	NA	NA	inter
CUST_1966_PI429285431	3.4642968	P	4.1088853	P	0.63967521922465	0	lncRNA	1959-1_{1..934}	"transcript_id ""ENST00000514134.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514134.1"" | genecode_v17"	chr4	167309853	167310786	-	ENSG00000249675.1	ENST00000514134.1	RP11-217C7.1	RP11-217C7.1-001	NA	NA	NA	inter
CUST_16509_PI429285431	4.2098546	P	5.0652223	P	0.552724435708859	0	lncRNA	18209-1_{1..376}	lnc-USP35-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP35-9:1	chr11	 79868019	 79868394	+	lnc-USP35-9	lnc-USP35-9:1	XLOC_009228	linc-C11orf82-5	NA	NA	NA	inter
CUST_33652_PI429285431	0.8979882	A	0.89587915	A	1.00146295113163	0	lncRNA	35216-1_{1..569}	n340415|AF075104|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2876|NULL|-1.2511100|-0.3197301	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340415|AF075104|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2876|NULL|-1.2511100|-0.3197301	chr5	 16452136	 16452704	+	NA	NA	NA	NA	ZNF622	NA	chr5:16451628-16462705	inner
CUST_7131_PI429285431	0.91196525	A	0.92300516	A	0.992376921683178	0	lncRNA	7068-1_{1..448}	"transcript_id ""ENST00000439525.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439525.1"" | genecode_v17"	chrY	  6225260	  6225707	-	ENSG00000229643.1	ENST00000439525.1	LINC00280	LINC00280-001	NA	NA	NA	inter
CUST_3930_PI429285431	0.8894255	A	0.90482235	A	0.98938446359508	0	lncRNA	3900-1_{1..789}	"transcript_id ""ENST00000532748.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532748.1"" | genecode_v17"	chr11	 44716413	 44717201	-	ENSG00000255079.1	ENST00000532748.1	RP11-45A12.1	RP11-45A12.1-001	NA	NA	NA	inter
CUST_25482_PI429285431	5.0139303	P	5.446189	P	0.74110060091919	0	lncRNA	27012-1_{1..131}	lnc-ATIC-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATIC-2:1	chr2	216301642	216301772	+	lnc-ATIC-2	lnc-ATIC-2:1	ENSG00000230695.1	AC012462.1	FN1	NA	chr2:216291642-216300791	inter
CUST_16067_PI429285431	1.8066545	A	2.1360593	A	0.795864758954937	0	lncRNA	17770-1_{1..295}	lnc-MFSD8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MFSD8-2:1	chr4	128544908	128545202	-	lnc-MFSD8-2	lnc-MFSD8-2:1	XLOC_004069	linc-ANKRD50-2	INTU	NA	chr4:128554087-128555185	inter
LNCA_21_P0006923	0.87373704	A	0.8764806	A	0.998100116189725	0	lncRNA	TCONS_00018353	NA	NA	NA	NA	XLOC_008637	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008637), lincRNA [TCONS_00018353]"	chr10:120059844-120059903	hs|10q26.11	Agilent_HUMAN_G3V2	TCONS_00018353	TCONS_00018353	chr10	120059844	120059903	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10373_PI429285431	0.90175843	A	0.91010404	A	0.994231963327984	0	lncRNA	11899-1_{1..1387}	lnc-CD47-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD47-2:1	chr3	107596749	107598135	-	lnc-CD47-2	lnc-CD47-2:1	XLOC_003208	linc-CBLB-9	NA	NA	NA	inter
CUST_48816_PI429285431	4.1749187	P	4.784611	P	0.655336458093992	0	lncRNA	52653-2_{3001..5123}	hg19_lincRNAsTranscripts_TCONS_l2_00014342 range=chr2:242908542-242913850 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014342 range=chr2:242908542-242913850 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	242911542	242913664	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20927_PI429285431	0.88530844	A	0.88831306	A	0.997919523316353	0	lncRNA	22558-1_{1..354}	lnc-SNW1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNW1-3:1	chr14	 79176159	 79176512	-	lnc-SNW1-3	lnc-SNW1-3:1	ENSG00000258874.1	RP11-232C2.2	NRXN3	NA	chr14:79166159-79186277	inner
CUST_43370_PI429285431	2.8135116	A	3.8389869	P	0.491248429412301	0	lncRNA	48186-1_{1..2692}	"gi|307691196|ref|NR_036638.1| Homo sapiens family with sequence similarity 213, member B (FAM213B), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|307691196|ref|NR_036638.1| Homo sapiens family with sequence similarity 213, member B (FAM213B), transcript variant 8, non-coding RNA"	Chr1	  2517899	  2520590	+	127281	NR_036638.1	NA	NA	NA	"hg19_refFlat_MMEL1:range=chr1:2522429-25609235'pad=0,hg19_refFlat_MMEL1:range=chr1:2522429-25609235'pad=0 3'pad=0 strand=- repeatMasking=none,-94.10"	NA	inter
LNCA_21_P0012900	2.1028473	A	2.379164	A	0.825696388406111	0	lncRNA	AK124130	NA	AK124130	NA	NA	GUSBP3	"glucuronidase, beta pseudogene 3"	NA	THC2506893	NA	"BROAD Institute lincRNA (XLOC_l2_011987), lincRNA [TCONS_l2_00022835]"	chr5:68937686-68937627	hs|5q13.2	Agilent_HUMAN_G3V2	AK124130	AK124130	chr5	 68937627	 68937686	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28317_PI429285431	6.4367876	P	6.6861014	P	0.841296472336114	0	lncRNA	29962-1_{1..563}	n325622|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045941|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045941|0.9177890|-0.1299092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325622|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045941|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045941|0.9177890|-0.1299092	chr13	113527414	113527976	+	NA	NA	NA	NA	ATP11A	NA	chr13:113517414-113541482	inner
CUST_35677_PI429285431	8.263264	P	6.8698444	P	2.62700619020064	0	lncRNA	37097-1_{1..1023}	n342837|D84145|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5340|NULL|3.4131600|-0.3326766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342837|D84145|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5340|NULL|3.4131600|-0.3326766	chr8	 30013812	 30014834	+	NA	NA	NA	NA	DCTN6	NA	chr8:30013813-30041155	inner
LNCA_21_P0007235	7.24687	P	7.6554604	P	0.753359091460795	0	lncRNA	TCONS_00019383	NA	NA	NA	NA	XLOC_009207	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009207), lincRNA [TCONS_00019383]"	chr11:72916265-72916324	hs|11q13.4	Agilent_HUMAN_G3V2	TCONS_00019383	TCONS_00019383	chr11	 72916265	 72916324	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9273_PI429285431	1.0514431	A	0.88452804	A	1.12265532276113	0	lncRNA	10778-1_{1..2311}	lnc-SBF2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SBF2-2:2	chr11	  9780976	  9783286	-	lnc-SBF2-2	lnc-SBF2-2:2	ENSG00000245522	XLOC_009371	SWAP70	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10chr11:9770976-9774508"	NA	inter
CUST_33057_PI429285431	0.88817847	A	0.8955328	A	0.994915337777601	0	lncRNA	34668-1_{1..1640}	n339746|BC027871|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2192|NULL|2.4698200|-0.2357593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339746|BC027871|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2192|NULL|2.4698200|-0.2357593	chr3	193675160	193676799	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11156_PI429285431	3.1324432	P	2.403597	P	1.65731311997535	0	lncRNA	12714-1_{1..253}	lnc-DPP6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DPP6-3:1	chr7	153092527	153092779	+	lnc-DPP6-3	lnc-DPP6-3:1	XLOC_006297	linc-DPP6-3	NA	NA	NA	inter
LNCA_21_P0013290	0.87611675	A	0.8775039	A	0.999038962980645	0	lncRNA	THC2668011	NA	NA	NA	NA	XLOC_l2_013751	NA	NA	THC2668011	NA	"BROAD Institute lincRNA (XLOC_l2_013751), lincRNA [TCONS_l2_00026435]"	chr7:025695876-025695817	hs|7p15.2	Agilent_HUMAN_G3V2	THC2668011	THC2668011	chr7	 25695817	 25695876	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33352_PI429285431	0.8787456	A	1.2889066	A	0.752539388109988	0	lncRNA	34933-1_{1..2172}	n340070|AK094703|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2525|NULL|-1.3550600|-0.4654673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340070|AK094703|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2525|NULL|-1.3550600|-0.4654673	chr4	 62941883	 62944054	+	NA	NA	NA	NA	LPHN3	NA	chr4:62931883-62938168	inter
LNCA_21_P0008864	0.875664	A	0.8780439	A	0.998351738901803	0	lncRNA	TCONS_00024187	NA	NA	NA	NA	XLOC_011546	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011546), lincRNA [TCONS_00024187]"	chr15:80695800-80695741	hs|15q25.1	Agilent_HUMAN_G3V2	TCONS_00024187	TCONS_00024187	chr15	 80695741	 80695800	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010212	0.8746673	A	0.87792796	A	0.997742434856233	0	lncRNA	TCONS_00028947	NA	NA	NA	NA	XLOC_014105	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014105), lincRNA [TCONS_00028947]"	chr21:44884778-44882108	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00028947	TCONS_00028947	chr21	 44882108	 44884778	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37083_PI429285431	0.89270896	A	1.3062154	A	0.75079635956012	0	lncRNA	38210-1_{1..2794}	n345527|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1076|NULL|-1.2688800|-0.3730511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345527|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1076|NULL|-1.2688800|-0.3730511	chr2	 61157160	 61159953	+	NA	NA	NA	NA	REL	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RPS12:range=chr6:133135908-1331386815'pad=0,hg19_refFlat_RPS12:range=chr6:133135908-1331386815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr2:61147160-61150178"	NA	inter
CUST_165_PI429285431	1.2808337	A	0.8886485	A	1.31237971508886	0	lncRNA	156-1_{1..735}	"transcript_id ""ENST00000422345.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422345.1"" | genecode_v17"	chr1	 17177816	 17178550	-	ENSG00000223643.2	ENST00000422345.1	RP11-108M9.1	RP11-108M9.1-001	NA	NA	NA	inter
LNCA_21_P0009202	0.8711909	A	1.9253229	A	0.481586881996424	0	lncRNA	AK000477	NA	AK000477	NA	NA	LOC100499467	uncharacterized LOC100499467	NA	THC2503193	NA	"BROAD Institute lincRNA (XLOC_012568), lincRNA [TCONS_00025151]"	chr17:70381150-70381091	hs|17q24.3	Agilent_HUMAN_G3V2	AK000477	AK000477	chr17	 70381091	 70381150	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48834_PI429285431	3.7759762	P	4.1643405	P	0.76399531687808	0	lncRNA	52672-1_{1..600}	hg19_lincRNAsTranscripts_TCONS_l2_00019177 range=chr3:13170728-13324482 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019177 range=chr3:13170728-13324482 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 13170728	 13171327	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2854_PI429285431	1.4039893	A	0.923108	A	1.39559593455127	0	lncRNA	2837-1_{1..164}	"transcript_id ""ENST00000453648.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453648.1"" | genecode_v17"	chr7	 64927984	 64928147	+	ENSG00000238124.1	ENST00000453648.1	RP11-667F9.2	RP11-667F9.2-001	NA	NA	NA	inter
LNCA_21_P0011332	6.8050337	P	6.423317	P	1.3028912773103	0	lncRNA	TCONS_l2_00008752	NA	NA	NA	NA	XLOC_l2_004739	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004739), lincRNA [TCONS_l2_00008752]"	chr15:78193705-78193764	hs|15q24.3	Agilent_HUMAN_G3V2	TCONS_l2_00008752	TCONS_l2_00008752	chr15	 78193705	 78193764	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15123_PI429285431	4.7954245	P	3.8468494	A	1.92996555597868	0	lncRNA	16783-1_{1..553}	lnc-TOMM34-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TOMM34-1:3	chr20	 43594203	 43594755	-	lnc-TOMM34-1	lnc-TOMM34-1:3	XLOC_013753	linc-TOMM34	STK4	NA	chr20:43595120-43604258	inter
CUST_17919_PI429285431	0.8895218	A	0.8997842	A	0.992911886391609	0	lncRNA	19651-1_{1..1263}	lnc-TGFBRAP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGFBRAP1-2:1	chr2	105813774	105815036	-	lnc-TGFBRAP1-2	lnc-TGFBRAP1-2:1	XLOC_002244	linc-MFSD9-11	NA	NA	NA	inter
CUST_43075_PI429285431	2.383275	A	2.6401057	A	0.836924449852575	0	lncRNA	47175-1_{1..101}	ENST00000408413 ncrna:snRNA chromosome:GRCh37:1:12630000:12630100:-1 gene:ENSG00000221340 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408413 ncrna:snRNA chromosome:GRCh37:1:12630000:12630100:-1 gene:ENSG00000221340 gene_biotype:snRNA transcript_biotype:snRNA	chr1	 12630000	 12630100	-	ENSG00000221340	ENST00000408413	NA	NA	DHRS3	NA	chr1:12627939-12640100	inner
CUST_24385_PI429285431	0.91127753	A	0.9249143	A	0.990592243781505	0	lncRNA	25938-1_{1..555}	lnc-AC006035.2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC006035.2-1:3	chr7	 16287510	 16288064	+	lnc-AC006035.2-1	lnc-AC006035.2-1:3	ENSG00000229688.3	AC004741.3	ISPD	NA	chr7:16277510-16297714	inter
CUST_24041_PI429285431	0.90706694	A	0.9092797	A	0.998467407266308	0	lncRNA	25593-1_{1..326}	lnc-C14orf38-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C14orf38-1:2	chr14	 59977364	 59977689	-	lnc-C14orf38-1	lnc-C14orf38-1:2	ENSG00000258782.2	RP11-701B16.2	C14orf38	NA	chr14:59971785-59987431	inner
CUST_323_PI429285431	0.90119874	A	0.9216171	A	0.98594675321164	0	lncRNA	314-1_{1..382}	"transcript_id ""ENST00000423410.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000423410.1"" | genecode_v17"	chr1	 95776484	 95776865	-	ENSG00000228504.1	ENST00000423410.1	RP4-586O15.1	RP4-586O15.1-001	NA	NA	NA	inter
CUST_15310_PI429285431	0.891533	A	0.90486026	A	0.990804784261099	0	lncRNA	16988-1_{1..842}	lnc-RNF34-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RNF34-1:2	chr12	121829773	121830614	+	lnc-RNF34-1	lnc-RNF34-1:2	XLOC_009914	linc-RNF34	RNF34	NA	chr12:121837902-121840204	inter
CUST_8779_PI429285431	0.91728824	A	1.4576266	A	0.687609622816906	0	lncRNA	10320-1_{1..1228}	lnc-TFAP2A-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TFAP2A-2:5	chr6	 10434746	 10435973	-	lnc-TFAP2A-2	lnc-TFAP2A-2:5	ENSG00000183674	XLOC_005602	NA	NA	NA	inter
CUST_8601_PI429285431	0.906131	A	0.9107641	A	0.996793730892021	0	lncRNA	10156-1_{1..1032}	lnc-TFB2M-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TFB2M-1:1	chr1	246831384	246832415	-	lnc-TFB2M-1	lnc-TFB2M-1:1	ENSG00000245759	ENST00000499703	CNST	NA	chr1:246821384-246831884	inner
CUST_22351_PI429285431	1.8333894	A	1.7380558	A	1.06831240953346	0	lncRNA	23945-1_{1..318}	lnc-WDR45L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR45L-2:1	chr17	 80546132	 80546449	-	lnc-WDR45L-2	lnc-WDR45L-2:1	ENSG00000262147.1	RP13-638C3.3	FOXK2	NA	chr17:80536132-80556287	inner
CUST_15664_PI429285431	0.8915055	A	0.9037819	A	0.991526750014416	0	lncRNA	17352-1_{1..671}	lnc-MEX3B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MEX3B-3:1	chr15	 82110666	 82111336	-	lnc-MEX3B-3	lnc-MEX3B-3:1	XLOC_011549	linc-TMC3-1	NA	NA	NA	inter
CUST_48650_PI429285431	4.061651	P	4.4555163	P	0.761087747525246	0	lncRNA	52497-1_{1..409}	hg19_lincRNAsTranscripts_TCONS_l2_00013790 range=chr2:91957137-91963402 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013790 range=chr2:91957137-91963402 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 91957137	 91957545	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43570_PI429285431	1.4497877	A	1.4373107	A	1.00868590280305	0	lncRNA	48344-1_{1..1731}	"gi|282721121|ref|NR_033189.1| Homo sapiens phosphodiesterase 4D interacting protein pseudogene (LOC100130000), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|282721121|ref|NR_033189.1| Homo sapiens phosphodiesterase 4D interacting protein pseudogene (LOC100130000), non-coding RNA"	Chr1	143687130	143688860	+	100130000	NR_033189.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.31;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-62.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	inter
CUST_21785_PI429285431	8.222902	P	8.549989	P	0.797144404250601	0	lncRNA	23395-1_{1..513}	lnc-FLII-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FLII-1:2	chr17	 18087711	 18088223	-	lnc-FLII-1	lnc-FLII-1:2	ENSG00000266677.1	RP11-258F1.1	ALKBH5	"hg19_refFlat_ALKBH5:range=chr17:18087558-181117105'pad=0,hg19_refFlat_ALKBH5:range=chr17:18087558-181117105'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30chr17:18086867-18097981"	NA	inner
CUST_19398_PI429285431	3.7623608	P	3.8552668	P	0.937632186674916	0	lncRNA	21060-1_{1..853}	lnc-ZBTB2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZBTB2-2:1	chr6	151549517	151550369	-	lnc-ZBTB2-2	lnc-ZBTB2-2:1	ENSG00000223598.1	RP1-292B18.4	AKAP12	NA	chr6:151546663-151559582	inter
LNCA_21_P0011378	0.887185	A	0.902147	A	0.989682723911911	0	lncRNA	TCONS_l2_00009129	NA	NA	NA	NA	XLOC_l2_004951	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004951), lincRNA [TCONS_l2_00009129]"	chr15:59698672-59698613	hs|15q22.2	Agilent_HUMAN_G3V2	TCONS_l2_00009129	TCONS_l2_00009129	chr15	 59698613	 59698672	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42175_PI429285431	5.485429	P	5.6337404	P	0.902305947283527	0	lncRNA	44229-1_{1..65}	ENST00000579507 ncrna:miRNA chromosome:GRCh37:3:16974688:16974752:1 gene:ENSG00000264818 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579507 ncrna:miRNA chromosome:GRCh37:3:16974688:16974752:1 gene:ENSG00000264818 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 16974688	 16974752	+	ENSG00000264818	ENST00000579507	NA	NA	PLCL2	NA	chr3:16964688-16984752	inner
LNCA_21_P0006138	2.3650017	A	3.4471076	P	0.472338847529994	0	lncRNA	TCONS_00015946	NA	NA	NA	NA	XLOC_007323	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007323), lincRNA [TCONS_00015946]"	chr9:33584811-33584870	hs|9p13.3	Agilent_HUMAN_G3V2	TCONS_00015946	TCONS_00015946	chr9	 33584811	 33584870	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4576_PI429285431	6.0791726	P	5.9874196	P	1.06566427088905	0	lncRNA	4525-1_{1..1045}	"transcript_id ""ENST00000417079.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417079.1"" | genecode_v17"	chr13	 30916597	 30917641	-	ENSG00000238121.1	ENST00000417079.1	LINC00426	LINC00426-001	NA	NA	NA	inter
LNCA_33_P3416787	0.8780384	A	1.6946796	A	0.567762236670125	0	lncRNA	XR_132931	XR_132931	XR_132931	100653080	NA	LOC100653080	zinc finger protein 182-like	NA	NA	NA	"PREDICTED: Homo sapiens zinc finger protein 182-like (LOC100653080), miscRNA [XR_132931]"	chr10:44019282-44019341	hs|10q11.21	Agilent_HUMAN_G3V2	XR_132931	XR_132931	chr10	 44019282	 44019341	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9555_PI429285431	0.89317554	A	1.0025162	A	0.927011627634822	0	lncRNA	11070-1_{1..1359}	lnc-ZNF133-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ZNF133-2:1	chr20	 18361423	 18362781	+	lnc-ZNF133-2	lnc-ZNF133-2:1	XLOC_013472	linc-POLR3F	C20orf12	NA	chr20:18364011-18372332	inter
CUST_26058_PI429285431	4.842647	P	4.83739	P	1.00365052171086	0	lncRNA	27572-1_{1..3000}	lnc-PARP10-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PARP10-1:2	chr8	145115556	145118555	-	lnc-PARP10-1	lnc-PARP10-1:2	ENSG00000178814.11	OPLAH	OPLAH	NA	chr8:145106167-145115584	inner
CUST_2389_PI429285431	1.380928	A	0.9008619	A	1.39480757082485	0	lncRNA	2382-1_{1..468}	"transcript_id ""ENST00000513657.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513657.1"" | genecode_v17"	chr5	144809466	144809933	+	ENSG00000248125.1	ENST00000513657.1	CTB-73N10.1	CTB-73N10.1-002	NA	NA	NA	inter
CUST_26923_PI429285431	0.87923074	A	0.88702637	A	0.994611053793505	0	lncRNA	28441-1_{1..690}	n323999|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053528|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053528|-0.9010980|-0.2138335	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323999|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053528|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053528|-0.9010980|-0.2138335	chr9	108466851	108467540	+	NA	NA	NA	NA	TMEM38B	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-63.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20chr9:108456851-108514764"	NA	inner
CUST_18448_PI429285431	2.4694533	A	2.8767915	P	0.754013260043399	0	lncRNA	20172-1_{1..597}	lnc-PSD4-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PSD4-1:10	chr2	113993369	113993965	+	lnc-PSD4-1	lnc-PSD4-1:10	ENSG00000189223	AC016683.6	PAX8	NA	chr2:113983369-114003934	inner
CUST_42375_PI429285431	10.0096855	P	10.650966	P	0.641143633126121	0	lncRNA	45055-1_{1..128}	ENST00000408548 ncrna:snoRNA chromosome:GRCh37:X:51933717:51933844:1 gene:ENSG00000221475 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408548 ncrna:snoRNA chromosome:GRCh37:X:51933717:51933844:1 gene:ENSG00000221475 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	 51933717	 51933844	+	ENSG00000221475	ENST00000408548	NA	NA	MAGED4	NA	chrX:51928008-51935364	inter
CUST_19650_PI429285431	0.88028085	A	1.4538858	A	0.67193568233691	0	lncRNA	21306-1_{1..483}	lnc-LEKR1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LEKR1-4:2	chr3	157098903	157099385	+	lnc-LEKR1-4	lnc-LEKR1-4:2	ENSG00000243176.1	RP11-550I24.2	VEPH1	"hg19_refFlat_VEPH1:range=chr3:156978923-1572131385'pad=0,hg19_refFlat_VEPH1:range=chr3:156978923-1572131385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70chr3:157088903-157109054"	NA	inner
CUST_22476_PI429285431	0.879532	A	1.1780096	A	0.813109975877804	0	lncRNA	24063-1_{1..383}	lnc-SAYSD1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAYSD1-1:2	chr6	 38900653	 38901035	-	lnc-SAYSD1-1	lnc-SAYSD1-1:2	ENSG00000231150.1	RP1-207H1.3	DNAH8	"hg19_refFlat_DNAH8:range=chr6:38690586-389981685'pad=0,hg19_refFlat_DNAH8:range=chr6:38690586-389981685'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40chr6:38890653-38910693"	NA	inner
LNCA_21_P0008773	1.2476957	A	0.8760418	A	1.2938352284559	0	lncRNA	TCONS_00023770	NA	NA	NA	NA	XLOC_011567	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011567), lincRNA [TCONS_00023770]"	chr15:87966026-87965967	hs|15q25.3	Agilent_HUMAN_G3V2	TCONS_00023770	TCONS_00023770	chr15	 87965967	 87966026	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33518_PI429285431	0.88530195	A	1.0562674	A	0.888248067561232	0	lncRNA	35086-2_{3001..5835}	n340254|BX537573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2715|NULL|-0.8829010|-0.3407828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340254|BX537573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2715|NULL|-0.8829010|-0.3407828	chr4	148410980	148413814	+	NA	NA	NA	NA	EDNRA	NA	chr4:148397980-148423807	inter
CUST_27123_PI429285431	0.87894976	A	0.88278145	A	0.997347598728459	0	lncRNA	28657-1_{1..328}	n324237|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326062|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326062|-1.1771700|-0.2909547	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324237|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326062|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326062|-1.1771700|-0.2909547	chr7	 15847446	 15847773	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010868	8.290478	P	8.872019	P	0.66824961203628	0	lncRNA	TCONS_l2_00003528	NA	NA	NA	NA	XLOC_l2_001945	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001945), lincRNA [TCONS_l2_00003528]"	chr10:45637390-45637331	hs|10q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00003528	TCONS_l2_00003528	chr10	 45637331	 45637390	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30328_PI429285431	10.815214	P	9.973236	P	1.79250606457885	0	lncRNA	32104-1_{1..207}	n335243|AY545555|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255369|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255369|1.0616200|-0.3215346	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335243|AY545555|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255369|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255369|1.0616200|-0.3215346	chr5	151046005	151046211	-	NA	NA	NA	NA	SPARC	NA	chr5:151041008-151057170	inner
LNCA_21_P0010343	11.588614	P	12.103673	P	0.699764314872374	0	lncRNA	ENST00000450776	NA	NA	NA	NA	XLOC_014170	NA	ENST00000450776	NA	NA	"BROAD Institute lincRNA (XLOC_014170), lincRNA [TCONS_00029366]"	chr22:23670617-23670676	hs|22q11.23	Agilent_HUMAN_G3V2	ENST00000450776	ENST00000450776	chr22	 23670617	 23670676	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005582	0.87287664	A	0.8769987	A	0.997146883627737	0	lncRNA	TCONS_00014228	NA	NA	NA	NA	XLOC_006283	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006283), lincRNA [TCONS_00014228]"	chr7:144854106-144857176	hs|7q35	Agilent_HUMAN_G3V2	TCONS_00014228	TCONS_00014228	chr7	144854106	144857176	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31934_PI429285431	5.9394984	P	5.28537	P	1.57366494080873	0	lncRNA	33662-1_{1..609}	n338490|CR542010|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|887|NULL|3.0450500|-0.0561921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338490|CR542010|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|887|NULL|3.0450500|-0.0561921	chr1	205739472	205740080	-	NA	NA	NA	NA	RAB7L1	NA	chr1:205737114-205744610	inner
LNCA_21_P0014452	0.8713414	A	0.8754	A	0.997190746212131	0	lncRNA	XR_133312	XR_133312	XR_133312	NA	Hs.657458	LOC100506849	NA	NA	THC2549873	NA	"PREDICTED: Homo sapiens hypothetical LOC100506849 (LOC100506849), miscRNA [XR_133312]"	chr2:122303604-122303545	hs|2q14.2	Agilent_HUMAN_G3V2	XR_133312	XR_133312	chr2	122303545	122303604	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013009	0.8702202	A	0.8738567	A	0.997482544397505	0	lncRNA	XR_108703	XR_108703	XR_108703	NA	Hs.665936	LOC100507506	uncharacterized LOC100507506	NA	THC2624059	NA	"PREDICTED: Homo sapiens hypothetical LOC100507506 (LOC100507506), miscRNA [XR_108703]"	chr6:4156454-4156513	hs|6p25.2	Agilent_HUMAN_G3V2	XR_108703	XR_108703	chr6	  4156454	  4156513	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31165_PI429285431	7.945284	P	8.073731	P	0.9148156806591	0	lncRNA	32960-1_{1..384}	n337578|EF565117|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395606|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395606|-1.4233500|-0.4845422	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337578|EF565117|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395606|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395606|-1.4233500|-0.4845422	chr4	 93181518	 93181901	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36157_PI429285431	2.0335402	A	1.5302017	A	1.41748994361382	0	lncRNA	37431-2_{3001..5756}	n344718|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_267|NULL|-1.6402100|-0.3419676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344718|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_267|NULL|-1.6402100|-0.3419676	chr21	 16744803	 16747558	-	NA	NA	NA	NA	LOC100652984	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-27.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00chr21:16742841-16767376"	NA	inter
CUST_37896_PI429285431	3.51013	P	3.0241313	A	1.40055505885861	0	lncRNA	38986-1_{1..3000}	n346434|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1984|NULL|-1.7536300|-0.2503766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346434|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1984|NULL|-1.7536300|-0.2503766	chr2	210164255	210167254	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31078_PI429285431	12.193618	P	11.764088	P	1.34679474770725	0	lncRNA	32869-1_{1..202}	n337322|DQ399597|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391883|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391883|0.6053080|-0.1396611	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337322|DQ399597|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391883|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391883|0.6053080|-0.1396611	chr11	102667774	102667975	-	NA	NA	NA	NA	MMP1	NA	chr11:102660641-102668966	inner
CUST_45161_PI429285431	5.757032	P	5.7065153	P	1.03563576949707	0	lncRNA	49637-1_{1..1413}	"gi|223029489|ref|NR_026765.1| Homo sapiens long intergenic non-protein coding RNA 589 (LINC00589), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223029489|ref|NR_026765.1| Homo sapiens long intergenic non-protein coding RNA 589 (LINC00589), non-coding RNA"	NA	NA	NA	NA	NA	NR_026765.1	NA	NA	NA	NA	NA	Unknown
CUST_18918_PI429285431	2.6769142	A	3.2572575	A	0.668804611431886	0	lncRNA	20609-1_{1..430}	lnc-GNAI2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GNAI2-1:3	chr3	 50300399	 50300828	+	lnc-GNAI2-1	lnc-GNAI2-1:3	ENSG00000230454	U73166.2	GNAI2	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10chr3:50290399-50296786"	NA	inter
CUST_15915_PI429285431	5.738539	P	5.7575054	P	0.986939531188455	0	lncRNA	17610-1_{1..818}	lnc-RASGRP1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASGRP1-5:1	chr15	 38335025	 38335842	-	lnc-RASGRP1-5	lnc-RASGRP1-5:1	XLOC_011429	linc-MEIS2-5	NA	NA	NA	inter
CUST_6899_PI429285431	0.92220956	A	0.8997618	A	1.01568128243701	0	lncRNA	6849-1_{1..2155}	"transcript_id ""ENST00000434081.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000434081.1"" | genecode_v17"	chr21	 46409779	 46411933	-	ENSG00000234880.1	ENST00000434081.1	LINC00163	LINC00163-001	NA	NA	NA	inter
CUST_49414_PI429285431	2.379635	A	1.84683	A	1.44673932601398	0	lncRNA	53219-1_{1..1077}	hg19_lincRNAsTranscripts_TCONS_l2_00023262 range=chr5:175570104-175574229 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023262 range=chr5:175570104-175574229 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175570104	175571180	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12798_PI429285431	3.3811336	P	2.6657677	A	1.64189958758413	0	lncRNA	14425-1_{1..896}	lnc-FZD10-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FZD10-3:1	chr12	130445450	130446345	+	lnc-FZD10-3	lnc-FZD10-3:1	XLOC_009952	linc-FZD10-2	NA	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10"	NA	inter
CUST_25241_PI429285431	2.8178377	A	2.2109663	A	1.52295297956209	0	lncRNA	26771-1_{1..559}	lnc-RP11-360L9.4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-360L9.4.1-1:1	chr8	 41435825	 41436383	-	lnc-RP11-360L9.4.1-1	lnc-RP11-360L9.4.1-1:1	ENSG00000253133.1	RP11-360L9.4	AGPAT6	"hg19_refFlat_GINS4:range=chr8:41387722-413996065'pad=0,hg19_refFlat_GINS4:range=chr8:41387722-413996065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60chr8:41435707-41445887"	NA	inner
CUST_20222_PI429285431	6.874992	P	7.9085007	P	0.488520598530222	0	lncRNA	21866-1_{1..1264}	lnc-SHARPIN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SHARPIN-2:1	chr8	145132905	145134168	-	lnc-SHARPIN-2	lnc-SHARPIN-2:1	ENSG00000255224.1	CTD-3065J16.9	EXOSC4	"hg19_refFlat_EXOSC4:range=chr8:145133632-1451355045'pad=0,hg19_refFlat_EXOSC4:range=chr8:145133632-1451355045'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.00chr8:145133522-145135551"	NA	inner
CUST_48251_PI429285431	2.8575723	A	2.6996315	A	1.11569353966762	0	lncRNA	52113-1_{1..660}	hg19_lincRNAsTranscripts_TCONS_l2_00000003 range=chr1:714143-719879 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000003 range=chr1:714143-719879 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	   714143	   714802	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42153_PI429285431	7.922812	P	7.656103	P	1.20306033724114	0	lncRNA	44183-1_{1..82}	ENST00000580744 ncrna:miRNA chromosome:GRCh37:9:91927140:91927221:1 gene:ENSG00000265112 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580744 ncrna:miRNA chromosome:GRCh37:9:91927140:91927221:1 gene:ENSG00000265112 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 91927140	 91927221	+	ENSG00000265112	ENST00000580744	NA	NA	SECISBP2	NA	chr9:91933412-91937221	inner
CUST_1307_PI429285431	1.4435929	A	1.1031252	A	1.26616699971121	0	lncRNA	1297-1_{1..452}	"transcript_id ""ENST00000440266.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440266.2"" | genecode_v17"	chr3	 10809149	 10809600	+	ENSG00000230599.2	ENST00000440266.2	AC018495.3	AC018495.3-001	NA	NA	NA	inter
CUST_30309_PI429285431	4.986272	P	5.845261	P	0.5513387852666	0	lncRNA	32085-1_{1..487}	n335216|AY536248|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255242|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255242|2.7160100|-0.1544621	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335216|AY536248|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255242|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255242|2.7160100|-0.1544621	chr22	 23603116	 23603602	+	NA	NA	NA	NA	BCR	NA	chr22:23593116-23637298	inner
LNCA_21_P0005809	2.5069711	A	3.1771226	P	0.628440690109021	0	lncRNA	BC043205	NA	BC043205	NA	Hs.667366	C8orf50	chromosome 8 open reading frame 50	NA	THC2606611	NA	"BROAD Institute lincRNA (XLOC_007033), lincRNA [TCONS_00014954]"	chr8:28555577-28555518	hs|8p21.1	Agilent_HUMAN_G3V2	BC043205	BC043205	chr8	 28555518	 28555577	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15772_PI429285431	4.342321	P	3.9845226	P	1.28146884115083	0	lncRNA	17461-1_{1..1031}	lnc-NDST2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDST2-3:1	chr10	 75541535	 75542565	-	lnc-NDST2-3	lnc-NDST2-3:1	XLOC_008855	linc-AGAP5-1	KIAA0913	NA	chr10:75545382-75551627	inter
CUST_43820_PI429285431	8.686296	P	9.040913	P	0.782077237815935	0	lncRNA	48544-1_{1..2431}	"gi|388596714|ref|NR_049786.1| Homo sapiens sorting nexin 17 (SNX17), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388596714|ref|NR_049786.1| Homo sapiens sorting nexin 17 (SNX17), transcript variant 9, non-coding RNA"	Chr2	 27593363	 27595793	+	9784	NR_049786.1	NA	NA	NA	NA	NA	inter
CUST_15541_PI429285431	0.90486777	A	0.9175521	A	0.991246429976224	0	lncRNA	17227-1_{1..1251}	lnc-C10orf31-8:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf31-8:4	chr10	 10504129	 10505379	-	lnc-C10orf31-8	lnc-C10orf31-8:4	XLOC_008729	linc-KIN-7	NA	NA	NA	inter
CUST_46451_PI429285431	3.0108793	A	3.261498	P	0.840535874005586	0	lncRNA	50658-1_{1..3000}	"gi|388454171|ref|NR_049761.1| Homo sapiens mitogen-activated protein kinase binding protein 1 (MAPKBP1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388454171|ref|NR_049761.1| Homo sapiens mitogen-activated protein kinase binding protein 1 (MAPKBP1), transcript variant 4, non-coding RNA"	Chr15	 42066632	 42069631	+	23005	NR_049761.1	NA	NA	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.71;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90"	NA	inter
CUST_13668_PI429285431	3.9540906	P	4.943693	P	0.503616550268398	0	lncRNA	15305-1_{1..394}	lnc-ANKRD20A1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD20A1-2:1	chr9	 67343487	 67343880	+	lnc-ANKRD20A1-2	lnc-ANKRD20A1-2:1	XLOC_007377	linc-ANKRD20A1-2	NA	NA	NA	inter
LNCA_19_P00319946	6.8921237	P	6.8889275	P	1.00221789291239	0	lncRNA	TCONS_00008880	NA	NA	NA	NA	XLOC_003677	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003677), lincRNA [TCONS_00008880]"	chr4:123625882-123625941	hs|4q27	Agilent_HUMAN_G3V2	TCONS_00008880	TCONS_00008880	chr4	123625882	123625941	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16945_PI429285431	1.6212033	A	1.8856492	A	0.832518421041109	0	lncRNA	18658-1_{1..285}	lnc-ODZ4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ODZ4-2:1	chr11	 79827957	 79828241	-	lnc-ODZ4-2	lnc-ODZ4-2:1	XLOC_009514	linc-ODZ4-2	NA	NA	NA	inter
CUST_35649_PI429285431	2.0258079	A	2.455285	A	0.742530864380447	0	lncRNA	37066-1_{1..479}	n342798|BC040728|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5301|NULL|-0.8166600|-0.1819049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342798|BC040728|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5301|NULL|-0.8166600|-0.1819049	chr7	  5817156	  5817634	-	NA	NA	NA	NA	RNF216	NA	chr7:5807156-5821361	inner
CUST_31815_PI429285431	2.2843466	A	3.6979206	P	0.37538060066148	0	lncRNA	33553-1_{1..1723}	n338361|BC034700|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|756|NULL|-1.0444700|-0.2329625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338361|BC034700|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|756|NULL|-1.0444700|-0.2329625	chr1	172500899	172502621	-	NA	NA	NA	NA	C1orf9	NA	chr1:172502260-172512606	inner
LNCA_21_P0005193	0.8739362	A	0.87724185	A	0.997711321051192	0	lncRNA	ENST00000454234	NA	AK124308	NA	Hs.636411	XLOC_006154	NA	ENST00000454234	THC2526458	NA	"BROAD Institute lincRNA (XLOC_006154), lincRNA [TCONS_00012883]"	chr7:77621407-77621466	hs|7q21.11	Agilent_HUMAN_G3V2	ENST00000454234	ENST00000454234	chr7	 77621407	 77621466	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008690	0.89099306	A	2.6392872	A	0.297653519866678	0	lncRNA	THC2741132	NA	NA	NA	NA	XLOC_011376	NA	NA	THC2741132	NA	"BROAD Institute lincRNA (XLOC_011376), lincRNA [TCONS_00023543]"	chr15:098565193-098565252	hs|15q26.3	Agilent_HUMAN_G3V2	THC2741132	THC2741132	chr15	 98565193	 98565252	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7958_PI429285431	1.2966624	A	1.2706306	A	1.01820764293194	0	lncRNA	9570-1_{1..562}	lnc-AGXT2L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-AGXT2L1-1:1	chr4	109541464	109542025	-	lnc-AGXT2L1-1	lnc-AGXT2L1-1:1	ENSG00000234492	RP11-462C24.1	RPL34	NA	chr4:109541722-109551616	inter
CUST_48340_PI429285431	0.87351114	A	0.87580144	A	0.998413744447736	0	lncRNA	52195-1_{1..553}	hg19_lincRNAsTranscripts_TCONS_l2_00001237 range=chr1:53878821-53905741 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001237 range=chr1:53878821-53905741 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 53878821	 53879373	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37033_PI429285431	3.2207549	A	3.9698846	P	0.594962357925379	0	lncRNA	38171-1_{1..1002}	n345488|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1037|NULL|-1.2820500|-0.1945780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345488|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1037|NULL|-1.2820500|-0.1945780	chr1	229131425	229132426	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41732_PI429285431	0.9031812	A	1.2416418	A	0.790884760165132	0	lncRNA	43260-1_{1..111}	ENST00000408393 ncrna:miRNA chromosome:GRCh37:8:9945431:9945541:1 gene:ENSG00000221320 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408393 ncrna:miRNA chromosome:GRCh37:8:9945431:9945541:1 gene:ENSG00000221320 gene_biotype:miRNA transcript_biotype:miRNA	chr8	  9945431	  9945541	+	ENSG00000221320	ENST00000408393	NA	NA	MSRA	NA	chr8:9935431-9955541	inner
CUST_7488_PI429285431	7.2913156	P	7.602036	P	0.806239068670298	0	lncRNA	9128-1_{1..3000}	lnc-UGDH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UGDH-1:1	chr4	 39603374	 39606373	-	lnc-UGDH-1	lnc-UGDH-1:1	ENSG00000248948	ENST00000505439	C4orf34	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10chr4:39593374-39614927"	NA	inner
CUST_44482_PI429285431	2.90908	A	3.6338086	P	0.605110867447133	0	lncRNA	49085-1_{1..1622}	"gi|310119495|ref|XR_108578.1| PREDICTED: Homo sapiens uncharacterized LOC100506791, transcript variant 1 (LOC100506791), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310119495|ref|XR_108578.1| PREDICTED: Homo sapiens uncharacterized LOC100506791, transcript variant 1 (LOC100506791), misc_RNA"	Chr5	  1363697	  1365318	-	100506791	XR_108578.1	NA	NA	NA	NA	NA	inter
CUST_32698_PI429285431	2.7361827	A	2.715309	A	1.01457372235492	0	lncRNA	34344-1_{1..1481}	n339329|AK092494|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1761|NULL|1.0715500|-0.1800442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339329|AK092494|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1761|NULL|1.0715500|-0.1800442	chr16	 88775364	 88776844	-	NA	NA	NA	NA	RNF166	"hg19_refFlat_CTU2:range=chr16:88772939-887816595'pad=0,hg19_refFlat_CTU2:range=chr16:88772939-887816595'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.60;hg19_refFlat_CTU2:range=chr16:88772939-887816285'pad=0,hg19_refFlat_CTU2:range=chr16:88772939-887816285'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.60chr16:88765364-88772829"	NA	inner
CUST_52091_PI429285431	0.89836234	A	0.8922374	A	1.00425450973017	0	lncRNA	55617-1_{1..2304}	hg19_lincRNAsTranscripts_TCONS_l2_00017558 range=chr22:17117968-17134763 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017558 range=chr22:17117968-17134763 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17117968	 17120271	+	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.11;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80"	NA	inter
CUST_7341_PI429285431	0.90156907	A	1.1381122	A	0.848776648171312	0	lncRNA	8876-1_{1..291}	"transcript_id ""ENST00000411124.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411124.1"" | genecode_v17"	chr22	 26359949	 26360239	-	ENSG00000223056.1	ENST00000411124.1	RN7SKP169	RN7SKP169-201	MYO18B	NA	chr22:26349949-26370239	inner
CUST_11878_PI429285431	4.4865766	P	4.574868	P	0.940636095741159	0	lncRNA	13459-1_{1..665}	lnc-CRYBA4-1:30	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:30	chr22	 27122607	 27123271	+	lnc-CRYBA4-1	lnc-CRYBA4-1:30	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
CUST_19954_PI429285431	6.488168	P	7.1109877	P	0.649400454749783	0	lncRNA	21608-2_{3001..4328}	lnc-XXbac-B461K10.4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XXbac-B461K10.4.1-1:1	chr22	 18296469	 18297796	-	lnc-XXbac-B461K10.4.1-1	lnc-XXbac-B461K10.4.1-1:1	ENSG00000093100.13	XXbac-B461K10.4	MICAL3	NA	chr22:18283469-18304263	inner
CUST_17622_PI429285431	0.89601237	A	1.1895554	A	0.815895885369447	0	lncRNA	19347-1_{1..422}	lnc-ZNF680-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF680-3:3	chr7	 63489664	 63490085	-	lnc-ZNF680-3	lnc-ZNF680-3:3	XLOC_006468	linc-ZNF479-7	NA	NA	NA	inter
CUST_37367_PI429285431	0.8984004	A	0.88949007	A	1.0061952819818	0	lncRNA	38472-1_{1..2003}	n345816|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1365|NULL|-1.2800000|-0.3513563	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345816|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1365|NULL|-1.2800000|-0.3513563	chr10	 64061815	 64063817	+	NA	NA	NA	NA	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10"	NA	inter
CUST_36222_PI429285431	0.9026925	A	0.9123738	A	0.993311899767208	0	lncRNA	37475-1_{1..3000}	n344766|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_315|NULL|-1.3189000|-0.2587506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344766|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_315|NULL|-1.3189000|-0.2587506	chr14	 98392666	 98395665	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51709_PI429285431	11.408614	P	11.651767	P	0.84489677707481	0	lncRNA	55266-1_{1..1507}	hg19_lincRNAsTranscripts_TCONS_l2_00011962 range=chr18:11619293-11634255 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011962 range=chr18:11619293-11634255 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 11619293	 11620799	-	NA	NA	NA	NA	AMAC1L1	NA	chr18:11609595-11610611	inter
CUST_16529_PI429285431	0.8792568	A	0.8773394	A	1.00132992396959	0	lncRNA	18228-1_{1..491}	lnc-SUMO1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUMO1-3:1	chr2	202922010	202922500	-	lnc-SUMO1-3	lnc-SUMO1-3:1	XLOC_002462	linc-ALS2-2	NA	NA	NA	inter
CUST_25459_PI429285431	4.040911	P	3.750133	P	1.22329978689887	0	lncRNA	26989-1_{1..770}	lnc-RP11-863N1.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-863N1.2.1-2:1	chr18	 19784781	 19785550	-	lnc-RP11-863N1.2.1-2	lnc-RP11-863N1.2.1-2:1	ENSG00000266283.1	RP11-627G18.1	GATA6	"hg19_refFlat_GATA6:range=chr18:19751106-197807865'pad=0,hg19_refFlat_GATA6:range=chr18:19751106-197807865'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.40chr18:19774781-19782227"	NA	inter
CUST_4222_PI429285431	2.4147813	A	2.4551432	A	0.972410987553056	0	lncRNA	4181-1_{1..320}	"transcript_id ""ENST00000549660.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549660.1"" | genecode_v17"	chr12	 33141697	 33142016	+	ENSG00000257435.1	ENST00000549660.1	RP11-267D19.1	RP11-267D19.1-001	NA	NA	NA	inter
CUST_12923_PI429285431	0.90393	A	0.8960615	A	1.00546892888072	0	lncRNA	14551-1_{1..319}	lnc-WDR70-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR70-3:1	chr5	 38013527	 38013845	+	lnc-WDR70-3	lnc-WDR70-3:1	XLOC_004343	linc-EGFLAM-2	NA	NA	NA	inter
CUST_34435_PI429285431	2.4209669	A	2.8571544	A	0.739085154121464	0	lncRNA	35915-1_{1..1926}	n341312|BC040328|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3781|NULL|-1.0365500|-0.3295032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341312|BC040328|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3781|NULL|-1.0365500|-0.3295032	chr7	126855180	126857105	+	NA	NA	NA	NA	GRM8	NA	chr7:126845180-126879975	inter
CUST_30633_PI429285431	5.9454145	P	5.8401895	P	1.07566213561615	0	lncRNA	32415-1_{1..668}	n335988|X74144|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323431|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323431|3.8483400|-0.0841685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335988|X74144|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323431|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323431|3.8483400|-0.0841685	chr14	 29236930	 29237597	+	NA	NA	NA	NA	FOXG1	NA	chr14:29236287-29238871	inner
CUST_39588_PI429285431	0.91920936	A	0.9673847	A	0.967158777448838	0	lncRNA	40531-2_{3001..3614}	n387590|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jdv.1||-0.9852330|-0.2407236	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387590|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jdv.1||-0.9852330|-0.2407236	chr6	  1201049	  1201662	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50762_PI429285431	0.9054806	A	0.9179777	A	0.9913750802503	0	lncRNA	54426-1_{1..942}	hg19_lincRNAsTranscripts_TCONS_l2_00004485 range=chr11:39183024-39266897 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004485 range=chr11:39183024-39266897 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 39183024	 39183965	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40"	NA	inter
CUST_51960_PI429285431	1.0252006	A	1.0156637	A	1.00663237276262	0	lncRNA	55503-1_{1..734}	hg19_lincRNAsTranscripts_TCONS_l2_00016229 range=chr20:26047731-26063592 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016229 range=chr20:26047731-26063592 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 26047731	 26048464	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26172_PI429285431	3.6508658	P	3.8935847	P	0.845151040703425	0	lncRNA	27683-1_{1..681}	lnc-LAMA5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LAMA5-1:2	chr20	 60881096	 60881776	-	lnc-LAMA5-1	lnc-LAMA5-1:2	ENSG00000226332.1	RP11-157P1.4	OSBPL2	"hg19_refFlat_ADRM1:range=chr20:60878625-608838175'pad=0,hg19_refFlat_ADRM1:range=chr20:60878625-608838175'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.50chr20:60871096-60871269"	NA	inner
CUST_31524_PI429285431	0.8872086	A	1.6343831	A	0.595769222149295	0	lncRNA	33282-2_{3001..4893}	n338011|CR627203|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|398|NULL|-0.1933090|-0.3627204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338011|CR627203|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|398|NULL|-0.1933090|-0.3627204	chr1	 75046113	 75048005	+	NA	NA	NA	NA	C1orf173	NA	chr1:75033795-75101782	inner
CUST_2244_PI429285431	0.89219934	A	0.90751797	A	0.989438107468901	0	lncRNA	2236-1_{1..533}	"transcript_id ""ENST00000513026.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513026.1"" | genecode_v17"	chr5	 87963092	 87963624	-	ENSG00000245526.3	ENST00000513026.1	LINC00461	LINC00461-008	NA	NA	NA	inter
CUST_30545_PI429285431	10.681831	P	10.515855	P	1.12192481655868	0	lncRNA	32326-1_{1..567}	n335721|CR625890|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000305085|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000305085|-1.3236200|-0.3840970	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335721|CR625890|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000305085|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000305085|-1.3236200|-0.3840970	chr1	150547034	150547600	-	NA	NA	NA	NA	MCL1	NA	chr1:150547027-150552214	inner
CUST_32545_PI429285431	0.9057827	A	1.4554112	A	0.683196031560555	0	lncRNA	34211-1_{1..1057}	n339160|BC018684|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1591|NULL|-0.8386970|-0.2877434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339160|BC018684|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1591|NULL|-0.8386970|-0.2877434	chr2	227668751	227669807	+	NA	NA	NA	NA	IRS1	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30chr2:227658751-227663506"	NA	inter
LNCA_21_P0008606	0.9024728	A	0.9239183	A	0.985245049176831	0	lncRNA	TCONS_00023344	NA	NA	NA	NA	XLOC_011205	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011205), lincRNA [TCONS_00023344]"	chr15:35016046-35016105	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00023344	TCONS_00023344	chr15	 35016046	 35016105	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007334	1.398076	A	0.91162854	A	1.40099077869693	0	lncRNA	ENST00000444572	NA	AK128035	NA	NA	DCDC5	doublecortin domain containing 5	ENST00000444572	THC2482361	GO:0035556	"BROAD Institute lincRNA (XLOC_009405), lincRNA [TCONS_00019603]"	chr11:30879521-30879462	hs|11p14.1	Agilent_HUMAN_G3V2	ENST00000444572	ENST00000444572	chr11	 30879462	 30879521	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19066_PI429285431	4.8941703	P	6.176792	P	0.411047863492608	0	lncRNA	20757-1_{1..2412}	lnc-FGF9-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-FGF9-3:1	chr13	 22848662	 22851073	+	lnc-FGF9-3	lnc-FGF9-3:1	ENSG00000231330	AL136962.1	NA	NA	NA	inter
CUST_16147_PI429285431	4.153881	P	4.4260826	P	0.828054942117508	0	lncRNA	17852-1_{1..491}	lnc-ARSJ-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARSJ-1:1	chr4	115285964	115286454	-	lnc-ARSJ-1	lnc-ARSJ-1:1	XLOC_004049	linc-ARSJ	NA	NA	NA	inter
LNCA_21_P0004267	0.8798052	A	0.89009506	A	0.992892987663778	0	lncRNA	TCONS_00010001	NA	NA	NA	NA	XLOC_004437	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004437), lincRNA [TCONS_00010001]"	chr5:76449124-76449183	hs|5q13.3	Agilent_HUMAN_G3V2	TCONS_00010001	TCONS_00010001	chr5	 76449124	 76449183	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_939_PI429285431	5.411383	P	5.7821236	P	0.773385381485913	0	lncRNA	928-2_{3001..3662}	"transcript_id ""ENST00000377469.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000377469.1"" | genecode_v17"	chr2	 75158366	 75159027	+	ENSG00000204792.2	ENST00000377469.1	AC104135.3	AC104135.3-001	NA	NA	NA	inter
CUST_8810_PI429285431	5.610857	P	5.5973363	P	1.00941588824272	0	lncRNA	10351-1_{1..883}	lnc-CISD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CISD2-1:1	chr4	103764481	103765363	+	lnc-CISD2-1	lnc-CISD2-1:1	ENSG00000246560	RP11-10L12.4	UBE2D3	NA	chr4:103754481-103775232	inner
LNCA_21_P0007586	5.155137	P	5.273627	P	0.921151271292954	0	lncRNA	ENST00000553247	NA	NA	NA	NA	XLOC_009810	NA	ENST00000553247	NA	NA	"BROAD Institute lincRNA (XLOC_009810), lincRNA [TCONS_00020478]"	chr12:76698799-76698858	hs|12q21.2	Agilent_HUMAN_G3V2	ENST00000553247	ENST00000553247	chr12	 76698799	 76698858	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30837_PI429285431	2.7159173	A	3.6367178	P	0.528215850825732	0	lncRNA	32625-1_{1..445}	n336794|AB205111|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328709|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328709|0.1910180|-0.2059946	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336794|AB205111|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328709|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328709|0.1910180|-0.2059946	chr9	   684273	   684717	+	NA	NA	NA	NA	KANK1	NA	chr9:674273-720948	inner
LNCA_21_P0005667	1.0446416	A	1.4908938	A	0.73394700426458	0	lncRNA	THC2767232	NA	NA	NA	NA	XLOC_006734	NA	NA	THC2767232	NA	"BROAD Institute lincRNA (XLOC_006734), lincRNA [TCONS_00014643]"	chr8:020826368-020826427	hs|8p21.3	Agilent_HUMAN_G3V2	THC2767232	THC2767232	chr8	 20826368	 20826427	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9328_PI429285431	1.8918246	A	2.0106838	A	0.920915569687728	0	lncRNA	10836-1_{1..266}	lnc-CRYBA4-1:51	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:51	chr22	 27238275	 27238540	+	lnc-CRYBA4-1	lnc-CRYBA4-1:51	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
CUST_20856_PI429285431	5.7900896	P	5.9021587	P	0.925260110283251	0	lncRNA	22487-1_{1..401}	lnc-C10orf103-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf103-1:1	chr10	 75142999	 75143399	+	lnc-C10orf103-1	lnc-C10orf103-1:1	ENSG00000233144.1	RP11-537A6.9	ANXA7	"hg19_refFlat_ANXA7:range=chr10:75135853-751606145'pad=0,hg19_refFlat_ANXA7:range=chr10:75135853-751606145'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00chr10:75135189-75153254"	NA	inner
CUST_52046_PI429285431	0.901557	A	0.9121918	A	0.992655621098277	0	lncRNA	55579-1_{1..1585}	hg19_lincRNAsTranscripts_TCONS_l2_00017231 range=chr21:40248019-40252602 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017231 range=chr21:40248019-40252602 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 40248019	 40249603	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30558_PI429285431	9.765699	P	9.334767	P	1.34810418868556	0	lncRNA	32339-1_{1..281}	n335743|X04729|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321062|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321062|0.3428000|-0.1074822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335743|X04729|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321062|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321062|0.3428000|-0.1074822	chr7	100770385	100770665	+	NA	NA	NA	NA	SERPINE1	NA	chr7:100770379-100781815	inner
LNCA_21_P0008367	0.8745604	A	0.879309	A	0.996713932276081	0	lncRNA	TCONS_00022581	NA	NA	NA	NA	XLOC_010895	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010895), lincRNA [TCONS_00022581]"	chr14:87614291-87614350	hs|14q31.3	Agilent_HUMAN_G3V2	TCONS_00022581	TCONS_00022581	chr14	 87614291	 87614350	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42053_PI429285431	0.8819648	A	0.87865686	A	1.00229551996533	0	lncRNA	43958-1_{1..94}	ENST00000385234 ncrna:miRNA chromosome:GRCh37:X:146312502:146312595:-1 gene:ENSG00000207969 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385234 ncrna:miRNA chromosome:GRCh37:X:146312502:146312595:-1 gene:ENSG00000207969 gene_biotype:miRNA transcript_biotype:miRNA	chrX	146312502	146312595	-	ENSG00000207969	ENST00000385234	NA	NA	NA	NA	NA	inter
LNCA_21_P0009989	0.8741772	A	0.8780563	A	0.997314824322647	0	lncRNA	TCONS_00028261	NA	NA	NA	NA	XLOC_013601	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013601), lincRNA [TCONS_00028261]"	chr20:61065651-61065710	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028261	TCONS_00028261	chr20	 61065651	 61065710	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4697_PI429285431	3.0150087	A	2.0797215	A	1.91227127671821	0	lncRNA	4644-1_{1..347}	"transcript_id ""ENST00000412119.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412119.1"" | genecode_v17"	chr13	112554302	112554648	+	ENSG00000226903.1	ENST00000412119.1	LINC00354	LINC00354-001	NA	NA	NA	inter
CUST_46666_PI429285431	7.460397	P	7.394087	P	1.04703524015734	0	lncRNA	50835-1_{1..1109}	"gi|397139901|ref|XR_109313.2| PREDICTED: Homo sapiens uncharacterized LOC100505942, transcript variant 1 (LOC100505942), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139901|ref|XR_109313.2| PREDICTED: Homo sapiens uncharacterized LOC100505942, transcript variant 1 (LOC100505942), misc_RNA"	Chr16	 67551609	 67552717	-	100505942	XR_109313.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0010616	0.8735655	A	0.87585604	A	0.998413578356309	0	lncRNA	TCONS_l2_00001237	NA	NA	NA	NA	XLOC_l2_000915	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000915), lincRNA [TCONS_l2_00001237]"	chr1:53878881-53878822	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_l2_00001237	TCONS_l2_00001237	chr1	 53878822	 53878881	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26886_PI429285431	1.526931	A	0.88347894	A	1.56206237158814	0	lncRNA	28403-1_{1..1846}	n323961|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000315870|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000315870|-0.2165130|-0.2043871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323961|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000315870|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000315870|-0.2165130|-0.2043871	chr9	131232751	131234596	-	NA	NA	NA	NA	ODF2	"hg19_refFlat_ODF2:range=chr9:131218371-1312570105'pad=0,hg19_refFlat_ODF2:range=chr9:131218371-1312570105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_ODF2:range=chr9:131219685-1312570105'pad=0,hg19_refFlat_ODF2:range=chr9:131219685-1312570105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ODF2:range=chr9:131219685-1312625345'pad=0,hg19_refFlat_ODF2:range=chr9:131219685-1312625345'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ODF2:range=chr9:131218371-1312625345'pad=0,hg19_refFlat_ODF2:range=chr9:131218371-1312625345'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ODF2:range=chr9:131218824-1312570105'pad=0,hg19_refFlat_ODF2:range=chr9:131218824-1312570105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ODF2:range=chr9:131217476-1312570105'pad=0,hg19_refFlat_ODF2:range=chr9:131217476-1312570105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_ODF2:range=chr9:131222838-1312570105'pad=0,hg19_refFlat_ODF2:range=chr9:131222838-1312570105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_ODF2:range=chr9:131222838-1312625345'pad=0,hg19_refFlat_ODF2:range=chr9:131222838-1312625345'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10chr9:131222751-131259390"	NA	inner
CUST_23635_PI429285431	0.91062057	A	1.9178754	A	0.497491978804306	0	lncRNA	25200-1_{1..2088}	lnc-FBXL14-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FBXL14-3:1	chr12	  1499755	  1501842	-	lnc-FBXL14-3	lnc-FBXL14-3:1	ENSG00000249028.2	RP5-951N9.1	ERC1	NA	chr12:1489755-1510668	inner
CUST_52106_PI429285431	9.373156	P	9.808093	P	0.739726056478048	0	lncRNA	55631-1_{1..1131}	hg19_lincRNAsTranscripts_TCONS_l2_00017869 range=chr22:18762193-18767556 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017869 range=chr22:18762193-18767556 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 18762193	 18763323	-	NA	NA	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50"	NA	inter
CUST_32202_PI429285431	2.2105563	A	1.9598417	A	1.1897963025161	0	lncRNA	33899-1_{1..1531}	n338779|BC042073|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1201|NULL|-0.8100020|-0.2244537	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338779|BC042073|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1201|NULL|-0.8100020|-0.2244537	chr2	 39663777	 39665307	+	NA	NA	NA	NA	MAP4K3	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00chr2:39653777-39664219"	NA	inter
CUST_12997_PI429285431	0.8917744	A	0.8893106	A	1.00170923510341	0	lncRNA	14624-1_{1..218}	lnc-SPTBN1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPTBN1-3:1	chr2	 54660962	 54661179	+	lnc-SPTBN1-3	lnc-SPTBN1-3:1	XLOC_001474	linc-SPTBN1-2	NA	NA	NA	inter
CUST_50805_PI429285431	5.897505	P	6.557255	P	0.632987975939621	0	lncRNA	54456-3_{6001..8103}	hg19_lincRNAsTranscripts_TCONS_l2_00004466 range=chr11:32472909-32488802 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004466 range=chr11:32472909-32488802 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 32478909	 32481011	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80"	NA	inter
LNCA_21_P0012787	0.87525547	A	0.87582767	A	0.999603459826129	0	lncRNA	TCONS_l2_00021945	NA	NA	NA	NA	XLOC_l2_011218	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011218), lincRNA [TCONS_l2_00021945]"	chr4:110317384-110303551	hs|4q25	Agilent_HUMAN_G3V2	TCONS_l2_00021945	TCONS_l2_00021945	chr4	110303551	110317384	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5064_PI429285431	7.181156	P	7.688396	P	0.703567135788506	0	lncRNA	5004-1_{1..503}	"transcript_id ""ENST00000553433.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553433.1"" | genecode_v17"	chr14	105119885	105120387	-	ENSG00000258736.1	ENST00000553433.1	RP11-982M15.7	RP11-982M15.7-002	NA	NA	NA	inter
CUST_47177_PI429285431	5.0720625	P	4.2689867	P	1.74481708279342	0	lncRNA	51254-1_{1..988}	"gi|207450726|ref|NR_024181.1| Homo sapiens zinc finger protein 577 (ZNF577), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|207450726|ref|NR_024181.1| Homo sapiens zinc finger protein 577 (ZNF577), transcript variant 3, non-coding RNA"	Chr19	 52359056	 52360043	-	84765	NR_024181.1	NA	NA	NA	NA	NA	inter
CUST_44750_PI429285431	0.8744911	A	0.87579995	A	0.999093185717526	0	lncRNA	49297-2_{3001..3956}	"gi|310119765|ref|XR_108644.1| PREDICTED: Homo sapiens uncharacterized LOC100505635 (LOC100505635), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119765|ref|XR_108644.1| PREDICTED: Homo sapiens uncharacterized LOC100505635 (LOC100505635), misc_RNA"	Chr6	 39855025	 39855980	-	100505635	XR_108644.2	NA	NA	NA	"hg19_refFlat_DAAM2:range=chr6:39824079-398698135'pad=0,hg19_refFlat_DAAM2:range=chr6:39824079-398698135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20"	NA	inter
CUST_7555_PI429285431	2.324	A	1.7187142	A	1.52128009120581	0	lncRNA	9191-1_{1..549}	lnc-TRPV4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRPV4-1:3	chr12	110173396	110173944	-	lnc-TRPV4-1	lnc-TRPV4-1:3	ENSG00000255650	AC007834.3	C12orf34	NA	chr12:110163396-110183762	inter
LNCA_33_P3392560	1.9824588	A	1.425982	A	1.4706733026883	0	lncRNA	ENST00000556886	XR_133041	XR_133041	NA	NA	NA	NA	ENST00000556886	THC2610364	NA	"PREDICTED: Homo sapiens hypothetical LOC100506412, transcript variant 1 (LOC100506412), miscRNA [XR_133041]"	chr14:46970948-46971007	hs|14q21.2	Agilent_HUMAN_G3V2	ENST00000556886	ENST00000556886	chr14	 46970948	 46971007	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012585	0.8750688	A	0.8778881	A	0.998047718339637	0	lncRNA	TCONS_l2_00020535	NA	NA	NA	NA	XLOC_l2_010679	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010679), lincRNA [TCONS_l2_00020535]"	chr4:57467274-57470360	hs|4q12	Agilent_HUMAN_G3V2	TCONS_l2_00020535	TCONS_l2_00020535	chr4	 57467274	 57470360	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43642_PI429285431	5.038853	P	5.672032	P	0.644754123563983	0	lncRNA	48400-1_{1..1728}	"gi|254553489|ref|NR_028105.1| Homo sapiens DDB1 and CUL4 associated factor 8 (DCAF8), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254553489|ref|NR_028105.1| Homo sapiens DDB1 and CUL4 associated factor 8 (DCAF8), transcript variant 4, non-coding RNA"	Chr1	160209012	160210739	-	50717	NR_028105.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003006	0.8741366	A	0.8776127	A	0.997593451477775	0	lncRNA	TCONS_00006141	NA	NA	NA	NA	XLOC_002746	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002746), lincRNA [TCONS_00006141]"	chr3:107011579-107011638	hs|3q13.12	Agilent_HUMAN_G3V2	TCONS_00006141	TCONS_00006141	chr3	107011579	107011638	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004761	1.8528788	A	1.397852	A	1.37080826934976	0	lncRNA	ENST00000430931	NA	NA	NA	NA	XLOC_005771	NA	ENST00000430931	NA	NA	"BROAD Institute lincRNA (XLOC_005771), lincRNA [TCONS_00011522]"	chr6:79519720-79519661	hs|6q14.1	Agilent_HUMAN_G3V2	ENST00000430931	ENST00000430931	chr6	 79519661	 79519720	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46027_PI429285431	0.9078088	A	0.90788275	A	0.999948743079679	0	lncRNA	50308-1_{1..1824}	"gi|341915597|ref|XR_132769.1| PREDICTED: Homo sapiens uncharacterized LOC100505923 (LOC100505923), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915597|ref|XR_132769.1| PREDICTED: Homo sapiens uncharacterized LOC100505923 (LOC100505923), misc_RNA"	NA	NA	NA	NA	NA	XR_132769.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007361	0.8712708	A	0.87529314	A	0.997215809437433	0	lncRNA	TCONS_00019658	NA	NA	NA	NA	XLOC_009464	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009464), lincRNA [TCONS_00019658]"	chr11:64178228-64178169	hs|11q13.1	Agilent_HUMAN_G3V2	TCONS_00019658	TCONS_00019658	chr11	 64178169	 64178228	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42131_PI429285431	1.1641947	A	0.95969397	A	1.15228750842603	0	lncRNA	44132-1_{1..83}	ENST00000454574 ncrna:miRNA chromosome:GRCh37:X:133304064:133304146:-1 gene:ENSG00000239594 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000454574 ncrna:miRNA chromosome:GRCh37:X:133304064:133304146:-1 gene:ENSG00000239594 gene_biotype:miRNA transcript_biotype:miRNA	chrX	133304064	133304146	-	ENSG00000239594	ENST00000454574	NA	NA	NA	NA	NA	inter
CUST_18098_PI429285431	0.8800066	A	0.8905811	A	0.992697111768994	0	lncRNA	19833-1_{1..604}	lnc-TSKU-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSKU-2:3	chr11	 76469093	 76469696	+	lnc-TSKU-2	lnc-TSKU-2:3	XLOC_009221	linc-TSKU-1	NA	NA	NA	inter
CUST_20710_PI429285431	0.89185226	A	0.9009515	A	0.993712735533172	0	lncRNA	22345-1_{1..396}	lnc-SSX6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SSX6-1:1	chrX	 47925699	 47926094	+	lnc-SSX6-1	lnc-SSX6-1:1	ENSG00000238068.1	ZNF630-AS1	ZNF630	NA	chrX:47917567-47931025	inner
CUST_19593_PI429285431	4.518359	P	3.3551035	A	2.23962237730643	0	lncRNA	21249-1_{1..538}	lnc-DGKE-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DGKE-2:1	chr17	 54968743	 54969280	+	lnc-DGKE-2	lnc-DGKE-2:1	ENSG00000262112.1	RP11-670E13.5	TRIM25	"hg19_refFlat_TRIM25:range=chr17:54969061-549913495'pad=0,hg19_refFlat_TRIM25:range=chr17:54969061-549913495'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr17:54965270-54979202"	NA	inner
CUST_20389_PI429285431	0.88928264	A	1.2315811	A	0.788783643009128	0	lncRNA	22031-1_{1..556}	lnc-STAU1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STAU1-1:2	chr20	 47662397	 47662952	-	lnc-STAU1-1	lnc-STAU1-1:2	ENSG00000227431.1	RP1-155G6.4	CSE1L	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70chr20:47654895-47672581"	NA	inter
CUST_50209_PI429285431	1.213866	A	1.1015586	A	1.0809557004564	0	lncRNA	53935-1_{1..1807}	hg19_lincRNAsTranscripts_TCONS_l2_00029745 range=chr9:46687818-46745686 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029745 range=chr9:46687818-46745686 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 46687818	 46689624	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48548_PI429285431	0.9070857	A	0.908268	A	0.999180827793322	0	lncRNA	52397-1_{1..1516}	hg19_lincRNAsTranscripts_TCONS_l2_00014799 range=chr2:112004289-112123535 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014799 range=chr2:112004289-112123535 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	112004289	112005804	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30275_PI429285431	4.4517465	P	4.544936	P	0.937447953277386	0	lncRNA	32051-1_{1..445}	n335168|AY393105|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000253746|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000253746|-1.1770200|-0.1598352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335168|AY393105|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000253746|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000253746|-1.1770200|-0.1598352	chr14	106322222	106322666	+	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106859077	inter
CUST_12196_PI429285431	4.0597334	P	3.2967467	A	1.69700015893704	0	lncRNA	13796-1_{1..347}	lnc-DET1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DET1-2:3	chr15	 89147578	 89147924	-	lnc-DET1-2	lnc-DET1-2:3	XLOC_011569	linc-DET1-1	NA	NA	NA	inter
CUST_34478_PI429285431	5.9336486	P	6.0080404	P	0.949742421488356	0	lncRNA	35946-1_{1..1431}	n341354|CR598519|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3823|NULL|-1.1977100|-0.1891633	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341354|CR598519|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3823|NULL|-1.1977100|-0.1891633	chr7	148394425	148395855	-	NA	NA	NA	NA	CUL1	NA	chr7:148395933-148405856	inter
CUST_11312_PI429285431	0.8869703	A	0.91125304	A	0.983309345749209	0	lncRNA	12875-1_{1..531}	lnc-ANLN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANLN-1:1	chr7	 36543936	 36544466	+	lnc-ANLN-1	lnc-ANLN-1:1	XLOC_006046	linc-GPR141-6	AOAH	NA	chr7:36552549-36554121	inter
CUST_49250_PI429285431	2.3589566	A	2.342299	A	1.01161308276469	0	lncRNA	53068-2_{3001..5446}	hg19_lincRNAsTranscripts_TCONS_l2_00022807 range=chr5:17141201-17217476 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022807 range=chr5:17141201-17217476 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 17144201	 17146646	-	NA	NA	NA	NA	BASP1	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-58.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40chr5:17217750-17227476"	NA	inter
CUST_49071_PI429285431	7.412939	P	7.708483	P	0.814765049331696	0	lncRNA	52896-1_{1..869}	hg19_lincRNAsTranscripts_TCONS_l2_00021820 range=chr4:3949226-3954903 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021820 range=chr4:3949226-3954903 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  3949226	  3950094	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25364_PI429285431	0.9153646	A	0.933679	A	0.987385661509571	0	lncRNA	26894-1_{1..970}	lnc-GABRB3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GABRB3-3:1	chr15	 27406169	 27407138	-	lnc-GABRB3-3	lnc-GABRB3-3:1	ENSG00000228740.2	AC136896.1	GABRG3	NA	chr15:27396169-27416466	inner
CUST_38527_PI429285431	7.4217153	P	7.367695	P	1.03815387818699	0	lncRNA	39539-2_{3001..5041}	n383184|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002igh.2||0.3775860|-0.2232260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383184|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002igh.2||0.3775860|-0.2232260	chr17	 42379943	 42381983	-	NA	NA	NA	NA	RUNDC3A	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50chr17:42385927-42395761"	NA	inter
LNCA_21_P0007881	2.0304723	A	1.553527	A	1.39179362076571	0	lncRNA	TCONS_00021347	NA	NA	NA	NA	XLOC_010117	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010117), lincRNA [TCONS_00021347]"	chr12:68826454-68826395	hs|12q15	Agilent_HUMAN_G3V2	TCONS_00021347	TCONS_00021347	chr12	 68826395	 68826454	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27360_PI429285431	1.9268637	A	1.3810165	A	1.45987738263466	0	lncRNA	28923-1_{1..1015}	n324522|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040483|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040483|-1.1030900|-0.1581843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324522|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040483|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040483|-1.1030900|-0.1581843	chr6	 40454053	 40455067	+	NA	NA	NA	NA	LRFN2	NA	chr6:40444053-40465602	inner
CUST_8108_PI429285431	1.0451651	A	0.8965227	A	1.10852583987672	0	lncRNA	9712-1_{1..3000}	lnc-RPGRIP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPGRIP1-2:1	chr14	 21669731	 21672730	+	lnc-RPGRIP1-2	lnc-RPGRIP1-2:1	ENSG00000247386	XLOC_010754	HNRNPC	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40chr14:21677295-21682514"	NA	inter
CUST_34863_PI429285431	4.751191	P	5.4207525	P	0.62869774778476	0	lncRNA	36289-1_{1..1655}	n341770|AK097239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4246|NULL|-1.0520000|-0.3570315	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341770|AK097239|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4246|NULL|-1.0520000|-0.3570315	chr9	119467560	119469214	+	NA	NA	NA	NA	ASTN2	NA	chr9:119457560-119479216	inner
CUST_22322_PI429285431	5.023725	P	3.2464685	A	3.4277371900156	0	lncRNA	23921-1_{1..453}	lnc-HAPLN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HAPLN1-1:1	chr5	 82876912	 82877364	-	lnc-HAPLN1-1	lnc-HAPLN1-1:1	ENSG00000249835.2	VCAN-AS1	VCAN	"hg19_refFlat_VCAN:range=chr5:82779338-828762535'pad=0,hg19_refFlat_VCAN:range=chr5:82779338-828762535'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40chr5:82866912-82878122"	NA	inner
CUST_37300_PI429285431	0.899848	A	0.89883983	A	1.00069905441775	0	lncRNA	38408-1_{1..586}	n345743|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1292|NULL|-1.3682900|-0.2005578	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345743|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1292|NULL|-1.3682900|-0.2005578	chr2	 18499915	 18500500	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22825_PI429285431	4.255641	M	4.6896176	P	0.740218654985742	0	lncRNA	24405-1_{1..475}	lnc-ATF7IP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATF7IP-2:1	chr12	 14772086	 14772560	+	lnc-ATF7IP-2	lnc-ATF7IP-2:1	ENSG00000256751.1	RP11-695J4.2	GUCY2C	"hg19_refFlat_GUCY2C:range=chr12:14766051-148493825'pad=0,hg19_refFlat_GUCY2C:range=chr12:14766051-148493825'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20chr12:14765566-14782232"	NA	inner
CUST_16920_PI429285431	0.89672464	A	0.9138923	A	0.988170806478056	0	lncRNA	18631-1_{1..1491}	lnc-SERPINI1-9:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERPINI1-9:5	chr3	164337113	164338603	+	lnc-SERPINI1-9	lnc-SERPINI1-9:5	XLOC_002900	linc-SERPINI1-4	NA	NA	NA	inter
LNCA_21_P0011473	3.2594147	P	4.1514707	P	0.538845656152441	0	lncRNA	TCONS_l2_00010121	NA	NA	NA	NA	XLOC_l2_005458	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005458), lincRNA [TCONS_l2_00010121]"	chr16:33298029-33297970	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00010121	TCONS_l2_00010121	chr16	 33297970	 33298029	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00801917	9.17757	P	9.003397	P	1.12831743092249	0	lncRNA	BC036859	NA	BC036859	NA	Hs.679453	XLOC_l2_012374	NA	NA	THC2614014	NA	"BROAD Institute lincRNA (XLOC_l2_012374), lincRNA [TCONS_l2_00025079]"	chr6:5986231-5986290	hs|6p25.1	Agilent_HUMAN_G3V2	BC036859	BC036859	chr6	  5986231	  5986290	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47674_PI429285431	0.88107157	A	0.8829609	A	0.998691273367966	0	lncRNA	51655-2_{3001..6000}	"gi|254039635|ref|NR_028062.1| Homo sapiens protein kinase, Y-linked, pseudogene (PRKY), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|254039635|ref|NR_028062.1| Homo sapiens protein kinase, Y-linked, pseudogene (PRKY), non-coding RNA"	ChrY	  7145013	  7148012	+	5616	NR_028062.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50"	NA	inter
LNCA_21_P0004840	0.8792058	A	0.88901526	A	0.993223664072734	0	lncRNA	TCONS_00011699	NA	NA	NA	NA	XLOC_005180	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005180), lincRNA [TCONS_00011699]"	chr6:14463567-14463626	hs|6p23	Agilent_HUMAN_G3V2	TCONS_00011699	TCONS_00011699	chr6	 14463567	 14463626	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39038_PI429285431	2.5900424	A	3.512932	P	0.527451519399039	0	lncRNA	40018-1_{1..2765}	n385434|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003yol.2||-1.0817600|-0.3560118	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385434|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003yol.2||-1.0817600|-0.3560118	chr8	119097733	119100497	-	NA	NA	NA	NA	EXT1	NA	chr8:119087733-119110498	inner
CUST_37945_PI429285431	3.0290396	A	2.3704405	A	1.57854906096609	0	lncRNA	39035-1_{1..1722}	n346492|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2042|NULL|-1.3015700|-0.2207075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346492|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2042|NULL|-1.3015700|-0.2207075	chr7	  6769770	  6771491	+	NA	NA	NA	NA	RSPH10B2	NA	chr7:6793740-6800933	inter
CUST_22215_PI429285431	1.8714648	A	1.8383496	A	1.02321917109134	0	lncRNA	23815-1_{1..430}	lnc-C3orf32-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C3orf32-5:2	chr3	  7576934	  7577363	-	lnc-C3orf32-5	lnc-C3orf32-5:2	ENSG00000236202.1	GRM7-AS1	GRM7	NA	chr3:7566934-7586971	inner
CUST_4127_PI429285431	4.608176	P	4.873377	P	0.832082798710431	0	lncRNA	4086-2_{3001..3684}	"transcript_id ""ENST00000513405.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000513405.1"" | genecode_v17"	chr11	134608490	134609173	+	ENSG00000251226.1	ENST00000513405.1	RP11-469N6.1	RP11-469N6.1-001	NA	NA	NA	inter
CUST_41169_PI429285431	4.826324	P	4.388335	P	1.35471464826296	0	lncRNA	41993-1_{1..98}	ENST00000384830 ncrna:miRNA chromosome:GRCh37:17:66420592:66420689:-1 gene:ENSG00000207561 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384830 ncrna:miRNA chromosome:GRCh37:17:66420592:66420689:-1 gene:ENSG00000207561 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 66420592	 66420689	-	ENSG00000207561	ENST00000384830	NA	NA	ARSG	NA	chr17:66410592-66417000	inner
CUST_47979_PI429285431	0.88755006	A	0.9011439	A	0.99062172108374	0	lncRNA	51869-1_{1..3000}	"gi|410172847|ref|XR_172020.1| PREDICTED: Homo sapiens uncharacterized LOC101060553 (LOC101060553), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172847|ref|XR_172020.1| PREDICTED: Homo sapiens uncharacterized LOC101060553 (LOC101060553), misc_RNA"	NA	NA	NA	NA	NA	XR_172020.1	NA	NA	NA	NA	NA	Unknown
CUST_51745_PI429285431	1.060886	A	0.9202152	A	1.10241758025613	0	lncRNA	55298-1_{1..2234}	hg19_lincRNAsTranscripts_TCONS_l2_00012389 range=chr19:20959100-20983629 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012389 range=chr19:20959100-20983629 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 20959100	 20961333	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24131_PI429285431	7.879902	P	7.840711	P	1.02753746720171	0	lncRNA	25683-1_{1..864}	lnc-BMF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BMF-1:1	chr15	 40370859	 40371722	-	lnc-BMF-1	lnc-BMF-1:1	ENSG00000259584.1	RP11-521C20.2	BMF	NA	chr15:40380091-40380905	inter
LNCA_21_P0006965	0.8737141	A	0.87483937	A	0.99922032637569	0	lncRNA	TCONS_00018429	NA	NA	NA	NA	XLOC_008727	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008727), lincRNA [TCONS_00018429]"	chr10:9832541-9832482	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018429	TCONS_00018429	chr10	  9832482	  9832541	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008138	0.8741024	A	0.8747896	A	0.999523782684997	0	lncRNA	TCONS_00021957	NA	NA	NA	NA	XLOC_010556	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010556), lincRNA [TCONS_00021957]"	chr13:30944167-30944108	hs|13q12.3	Agilent_HUMAN_G3V2	TCONS_00021957	TCONS_00021957	chr13	 30944108	 30944167	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14833_PI429285431	0.87441456	A	0.87715733	A	0.998100662735797	0	lncRNA	16494-1_{1..357}	lnc-IL1R2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL1R2-1:2	chr2	102605361	102605717	+	lnc-IL1R2-1	lnc-IL1R2-1:2	XLOC_001595	linc-IL1R2-1	IL1R2	NA	chr2:102608306-102615462	inter
CUST_20320_PI429285431	4.239685	P	4.499246	P	0.835342068343486	0	lncRNA	21963-1_{1..593}	lnc-PIGM-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PIGM-2:1	chr1	160011624	160012216	-	lnc-PIGM-2	lnc-PIGM-2:1	ENSG00000250463.1	RP11-226L15.4	KCNJ10	NA	chr1:160007257-160022085	inner
CUST_25011_PI429285431	1.9190103	A	2.175441	A	0.837156526752881	0	lncRNA	26551-1_{1..284}	lnc-TALDO1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TALDO1-1:1	chr11	   781928	   782211	+	lnc-TALDO1-1	lnc-TALDO1-1:1	ENSG00000255142.1	AP006621.6	PDDC1	NA	chr11:771928-777487	inter
CUST_14322_PI429285431	3.3042076	P	2.6403632	A	1.58429874015191	0	lncRNA	15980-1_{1..640}	lnc-UMODL1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UMODL1-4:4	chr21	 43194727	 43195366	+	lnc-UMODL1-4	lnc-UMODL1-4:4	XLOC_013950	linc-UMODL1-2	RIPK4	NA	chr21:43184727-43187249	inter
CUST_7228_PI429285431	0.87278044	A	0.8746911	A	0.998676507997057	0	lncRNA	7750-1_{1..321}	"transcript_id ""ENST00000410516.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410516.1"" | genecode_v17"	chr5	179272832	179273152	+	ENSG00000222448.1	ENST00000410516.1	RN7SKP150	RN7SKP150-201	C5orf45	NA	chr5:179264266-179283152	inner
LNCA_21_P0009058	1.2564368	A	0.99240047	A	1.20083366654237	0	lncRNA	TCONS_00024726	NA	NA	NA	NA	XLOC_012006	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012006), lincRNA [TCONS_00024726]"	chr16:73982568-73982509	hs|16q22.3	Agilent_HUMAN_G3V2	TCONS_00024726	TCONS_00024726	chr16	 73982509	 73982568	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014113	0.87562215	A	0.87778664	A	0.998500814761771	0	lncRNA	ENST00000506660	XR_108478	XR_108478	NA	Hs.369473	LOC100506907	NA	ENST00000506660	THC2642093	NA	"PREDICTED: Homo sapiens hypothetical LOC100506907 (LOC100506907), miscRNA [XR_108478]"	chr3:126111984-126111925	hs|3q21.3	Agilent_HUMAN_G3V2	ENST00000506660	ENST00000506660	chr3	126111925	126111984	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47307_PI429285431	6.666031	P	6.7924814	P	0.916082605002115	0	lncRNA	51370-2_{3001..6000}	"gi|386781512|ref|NR_048539.1| Homo sapiens solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 (SLC9A8), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386781512|ref|NR_048539.1| Homo sapiens solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 (SLC9A8), transcript variant 5, non-coding RNA"	Chr20	 48432250	 48435249	+	23315	NR_048539.1	NA	NA	NA	NA	NA	inter
CUST_51883_PI429285431	3.151874	A	1.1394359	A	4.03463482217082	0	lncRNA	55432-2_{3001..4693}	hg19_lincRNAsTranscripts_TCONS_l2_00012690 range=chr19:53707069-53719341 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012690 range=chr19:53707069-53719341 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 53710069	 53711761	+	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.42;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
LNCA_21_P0012007	1.3078537	A	0.8774853	A	1.34757764419118	0	lncRNA	ENST00000455541	NA	NA	NA	NA	XLOC_l2_007371	NA	ENST00000455541	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007371), lincRNA [TCONS_l2_00015374]"	chr2:70323170-70323229	hs|2p13.3	Agilent_HUMAN_G3V2	ENST00000455541	ENST00000455541	chr2	 70323170	 70323229	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43632_PI429285431	14.402254	P	14.879048	P	0.718572684732942	0	lncRNA	48391-1_{1..2469}	"gi|383792152|ref|NR_047544.1| Homo sapiens lamin A/C (LMNA), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|383792152|ref|NR_047544.1| Homo sapiens lamin A/C (LMNA), transcript variant 6, non-coding RNA"	Chr1	156052369	156054837	+	4000	NR_047544.1	NA	NA	NA	NA	NA	inter
CUST_9541_PI429285431	0.90694994	A	0.9200077	A	0.990989887019208	0	lncRNA	11053-1_{1..1183}	lnc-ETS2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ETS2-2:1	chr21	 40229700	 40230882	+	lnc-ETS2-2	lnc-ETS2-2:1	XLOC_013939	linc-WRB-5	NA	NA	NA	inter
CUST_27075_PI429285431	0.8881916	A	1.9362552	A	0.483616844494343	0	lncRNA	28607-1_{1..430}	n324184|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322755|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322755|-1.0258800|-0.3304660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324184|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322755|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322755|-1.0258800|-0.3304660	chr7	152733510	152733939	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004834	0.87033904	A	0.87397563	A	0.997482482171308	0	lncRNA	TCONS_00011688	NA	NA	NA	NA	XLOC_005164	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005164), lincRNA [TCONS_00011688]"	chr6:8941031-8941090	hs|6p24.3	Agilent_HUMAN_G3V2	TCONS_00011688	TCONS_00011688	chr6	  8941031	  8941090	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18895_PI429285431	1.0467769	A	0.91126066	A	1.09848581497825	0	lncRNA	20587-1_{1..974}	lnc-PEAK1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PEAK1.1-2:1	chr15	 77776140	 77777113	-	lnc-PEAK1.1-2	lnc-PEAK1.1-2:1	ENSG00000244881	AC090984.1	HMG20A	NA	chr15:77766140-77777945	inner
CUST_8015_PI429285431	13.20978	P	13.000051	P	1.15647092866426	0	lncRNA	9627-1_{1..1662}	lnc-TRPV2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TRPV2-1:6	chr17	 16344682	 16346343	+	lnc-TRPV2-1	lnc-TRPV2-1:6	ENSG00000175061	NCRNA00188	C17orf76	NA	chr17:16345328-16355309	inter
CUST_13214_PI429285431	0.89773726	A	0.90426433	A	0.995485998699636	0	lncRNA	14842-1_{1..1121}	lnc-COG6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COG6-1:1	chr13	 40214443	 40215563	+	lnc-COG6-1	lnc-COG6-1:1	XLOC_010354	linc-COG6-1	NA	NA	NA	inter
CUST_15645_PI429285431	0.903758	A	0.90812016	A	0.996980947626847	0	lncRNA	17337-1_{1..524}	lnc-NR3C2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NR3C2-4:1	chr4	150071377	150071900	-	lnc-NR3C2-4	lnc-NR3C2-4:1	XLOC_004120	linc-NR3C2-2	NA	NA	NA	inter
CUST_9313_PI429285431	4.139909	P	4.1038265	P	1.02532586910534	0	lncRNA	10819-1_{1..582}	lnc-PAFAH2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAFAH2-1:1	chr1	 26330951	 26331532	-	lnc-PAFAH2-1	lnc-PAFAH2-1:1	XLOC_000751	linc-PAFAH2-2	PAFAH2	NA	chr1:26320951-26324648	inter
CUST_16974_PI429285431	1.2353956	A	2.189763	A	0.516067827999272	0	lncRNA	18684-3_{6001..8627}	lnc-S1PR1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-S1PR1-2:2	chr1	101638013	101640639	+	lnc-S1PR1-2	lnc-S1PR1-2:2	XLOC_000318	linc-S1PR1	NA	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60"	NA	inter
CUST_41714_PI429285431	0.9089376	A	0.91715205	A	0.994322356230497	0	lncRNA	43220-1_{1..69}	ENST00000385192 ncrna:miRNA chromosome:GRCh37:4:113569339:113569407:-1 gene:ENSG00000207927 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385192 ncrna:miRNA chromosome:GRCh37:4:113569339:113569407:-1 gene:ENSG00000207927 gene_biotype:miRNA transcript_biotype:miRNA	chr4	113569339	113569407	-	ENSG00000207927	ENST00000385192	NA	NA	LARP7	NA	chr4:113559339-113578742	inner
CUST_33957_PI429285431	0.90509987	A	0.9149032	A	0.993227884281318	0	lncRNA	35496-1_{1..1618}	n340761|AK129642|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3224|NULL|-0.9533020|-0.1918850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340761|AK129642|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3224|NULL|-0.9533020|-0.1918850	chr17	 55731046	 55732663	+	NA	NA	NA	NA	MSI2	NA	chr17:55721046-55742651	inner
LNCA_21_P0011661	0.9014944	A	0.9224394	A	0.985586909846495	0	lncRNA	TCONS_l2_00012072	NA	NA	NA	NA	XLOC_l2_006471	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006471), lincRNA [TCONS_l2_00012072]"	chr18:36872779-36872720	hs|18q12.2	Agilent_HUMAN_G3V2	TCONS_l2_00012072	TCONS_l2_00012072	chr18	 36872720	 36872779	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007073	1.9282885	A	2.3716996	A	0.735393790544665	0	lncRNA	TCONS_00018797	NA	NA	NA	NA	XLOC_008583	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008583), lincRNA [TCONS_00018797]"	chr10:102133735-102140676	hs|10q24.31	Agilent_HUMAN_G3V2	TCONS_00018797	TCONS_00018797	chr10	102133735	102140676	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008050	0.897718	A	2.121713	A	0.428095625937038	0	lncRNA	TCONS_00021755	NA	NA	NA	NA	XLOC_010350	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010350), lincRNA [TCONS_00021755]"	chr13:38444720-38444779	hs|13q13.3	Agilent_HUMAN_G3V2	TCONS_00021755	TCONS_00021755	chr13	 38444720	 38444779	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27302_PI429285431	0.9089169	A	0.922877	A	0.99037026180122	0	lncRNA	28860-1_{1..733}	n324454|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041538|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041538|-1.0689800|-0.3840535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324454|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041538|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041538|-1.0689800|-0.3840535	chr6	 92396353	 92397085	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50"	NA	inter
CUST_44384_PI429285431	2.7164042	A	0.903563	A	3.5133351326446	0	lncRNA	49004-1_{1..2452}	"gi|401782606|ref|NR_073117.1| Homo sapiens epithelial mitogen homolog (mouse) (EPGN), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|401782606|ref|NR_073117.1| Homo sapiens epithelial mitogen homolog (mouse) (EPGN), transcript variant 7, non-coding RNA"	Chr4	 75174187	 75176638	+	255324	NR_073117.1	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-28.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30"	NA	inter
LNCA_21_P0014265	0.8919416	A	0.90898603	A	0.98825521620143	0	lncRNA	XR_109045	XR_109045	XR_109045	NA	NA	LOC100507282	uncharacterized LOC100507282	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507282 (LOC100507282), miscRNA [XR_109045]"	chr11:43880885-43880826	hs|11p11.2	Agilent_HUMAN_G3V2	XR_109045	XR_109045	chr11	 43880826	 43880885	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39649_PI429285431	1.0410513	A	0.9009268	A	1.10200021089158	0	lncRNA	40587-1_{1..432}	n405225|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000322484||0.0071870|-0.4706233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405225|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000322484||0.0071870|-0.4706233	chr7	    87698	    88129	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_938_PI429285431	0.9044297	A	0.9198657	A	0.989357615318006	0	lncRNA	928-1_{1..3000}	"transcript_id ""ENST00000377469.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000377469.1"" | genecode_v17"	chr2	 75155366	 75158365	+	ENSG00000204792.2	ENST00000377469.1	AC104135.3	AC104135.3-001	NA	NA	NA	inter
LNCA_21_P0003743	3.4533	P	3.24843	P	1.15258248391056	0	lncRNA	ENST00000509824	NA	NA	NA	NA	XLOC_003961	NA	ENST00000509824	THC2731649	NA	"BROAD Institute lincRNA (XLOC_003961), lincRNA [TCONS_00008493]"	chr4:59390916-59390857	hs|4q12	Agilent_HUMAN_G3V2	ENST00000509824	ENST00000509824	chr4	 59390857	 59390916	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_791_PI429285431	3.5217986	P	3.6336937	P	0.925371710423019	0	lncRNA	784-1_{1..2472}	"transcript_id ""ENST00000433669.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000433669.1"" | genecode_v17"	chr2	 20068652	 20071123	+	ENSG00000228784.2	ENST00000433669.1	AC013400.2	AC013400.2-002	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70"	NA	inter
LNCA_21_P0007303	4.4230666	P	3.9385114	P	1.39915442317829	0	lncRNA	TCONS_00019544	NA	NA	NA	NA	XLOC_009342	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009342), lincRNA [TCONS_00019544]"	chr11:133914079-133914138	hs|11q25	Agilent_HUMAN_G3V2	TCONS_00019544	TCONS_00019544	chr11	133914079	133914138	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27255_PI429285431	1.1709743	A	0.91020495	A	1.19811745772044	0	lncRNA	28806-1_{1..728}	n324399|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042188|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042188|-0.8153310|-0.3214373	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324399|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042188|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042188|-0.8153310|-0.3214373	chr6	129889463	129890190	-	NA	NA	NA	NA	ARHGAP18	NA	chr6:129898240-129925425	inner
LNCA_21_P0012563	1.926217	A	1.3081077	A	1.53486237428428	0	lncRNA	THC2659061	NA	NA	NA	NA	XLOC_l2_010494	NA	NA	THC2659061	NA	"BROAD Institute lincRNA (XLOC_l2_010494), lincRNA [TCONS_l2_00020305]"	chr3:193733331-193733272	hs|3q29	Agilent_HUMAN_G3V2	THC2659061	THC2659061	chr3	193733272	193733331	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11594_PI429285431	6.087562	P	6.1746945	P	0.941392001245267	0	lncRNA	13175-1_{1..283}	lnc-GPR3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR3-2:1	chr1	 27856871	 27857153	+	lnc-GPR3-2	lnc-GPR3-2:1	XLOC_000107	linc-FAM76A-2	AHDC1	NA	chr1:27860756-27867072	inter
CUST_46622_PI429285431	4.161938	P	3.8309796	P	1.25784870134301	0	lncRNA	50799-1_{1..1297}	"gi|397139619|ref|XR_158893.1| PREDICTED: Homo sapiens uncharacterized LOC100289283 (LOC100289283), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139619|ref|XR_158893.1| PREDICTED: Homo sapiens uncharacterized LOC100289283 (LOC100289283), misc_RNA"	Chr16	 29820000	 29821296	-	100289283	XR_158893.2	NA	NA	NA	"hg19_refFlat_MAZ:range=chr16:29818023-298215525'pad=0,hg19_refFlat_MAZ:range=chr16:29818023-298215525'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.00;hg19_refFlat_MAZ:range=chr16:29818023-298210635'pad=0,hg19_refFlat_MAZ:range=chr16:29818023-298210635'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30"	NA	inter
CUST_4041_PI429285431	1.1100099	A	0.91684437	A	1.14326950280504	0	lncRNA	4003-1_{1..432}	"transcript_id ""ENST00000526206.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526206.1"" | genecode_v17"	chr11	 86414141	 86414572	+	ENSG00000254731.1	ENST00000526206.1	CTD-2005H7.1	CTD-2005H7.1-001	NA	NA	NA	inter
CUST_7466_PI429285431	8.015434	P	8.123356	P	0.927923643752393	0	lncRNA	9109-1_{1..1098}	lnc-TAF12-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-TAF12-1:2	chr1	 28908102	 28909199	-	lnc-TAF12-1	lnc-TAF12-1:2	ENSG00000197989	SNHG12	TRNAU1AP	NA	chr1:28898102-28905057	inter
CUST_29656_PI429285431	7.907632	P	8.336634	P	0.74277543062431	0	lncRNA	31418-1_{1..330}	n333278|AY034105|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083480|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083480|1.0148900|-0.1918008	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333278|AY034105|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083480|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083480|1.0148900|-0.1918008	chr12	115115385	115115714	-	NA	NA	NA	NA	TBX3	NA	chr12:115108059-115121969	inner
CUST_24045_PI429285431	4.1927166	P	4.4400253	P	0.842466543828903	0	lncRNA	25597-1_{1..501}	lnc-ATP6V0D2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATP6V0D2-1:1	chr8	 87224424	 87224924	+	lnc-ATP6V0D2-1	lnc-ATP6V0D2-1:1	ENSG00000253699.1	CTD-3118D11.3	SLC7A13	NA	chr8:87226288-87234465	inter
CUST_39697_PI429285431	4.0151906	P	3.3816838	P	1.55133127948348	0	lncRNA	40635-2_{3001..6000}	n405483|NR_002328|lncRNA|Homosapiens||RefGeneNoncode|NR_002328||1.9532700|-0.3021892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405483|NR_002328|lncRNA|Homosapiens||RefGeneNoncode|NR_002328||1.9532700|-0.3021892	chr1	145512819	145515818	-	NA	NA	NA	NA	ITGA10	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70chr1:145524990-145526076"	NA	inter
CUST_25330_PI429285431	0.89138657	A	1.4085519	A	0.698743406723914	0	lncRNA	26862-1_{1..1072}	lnc-HABP4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HABP4-2:1	chr9	 99011865	 99012936	+	lnc-HABP4-2	lnc-HABP4-2:1	ENSG00000232283.1	RP11-240L7.4	HSD17B3	"hg19_refFlat_HSD17B3:range=chr9:98997742-990643865'pad=0,hg19_refFlat_HSD17B3:range=chr9:98997742-990643865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50chr9:99001865-99022675"	NA	inner
CUST_506_PI429285431	5.299924	P	5.232872	P	1.04757388480933	0	lncRNA	498-1_{1..952}	"transcript_id ""ENST00000605589.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605589.1"" | genecode_v17"	chr1	184354887	184355838	-	ENSG00000271387.1	ENST00000605589.1	RP11-382D12.2	RP11-382D12.2-001	C1orf21	NA	chr1:184356150-184365838	inter
CUST_37032_PI429285431	1.4539423	A	1.2468711	A	1.15434238530798	0	lncRNA	38170-1_{1..564}	n345487|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1036|NULL|-1.6316000|-0.3161537	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345487|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1036|NULL|-1.6316000|-0.3161537	chr1	228264261	228264824	+	NA	NA	NA	NA	LOC100506571	NA	chr1:228261610-228264251	inter
CUST_13245_PI429285431	3.898718	P	4.5433636	P	0.639649902209496	0	lncRNA	14875-1_{1..508}	lnc-EGLN1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EGLN1-1:5	chr1	231663868	231664375	-	lnc-EGLN1-1	lnc-EGLN1-1:5	XLOC_001257	linc-EGLN1-2	TSNAX	NA	chr1:231664399-231674082	inter
LNCA_19_P00318904	1.22268	A	2.2056255	A	0.505945713021485	0	lncRNA	XR_108784	XR_108784	XR_108784	NA	NA	LOC100507525	NA	NA	THC2650820	NA	"PREDICTED: Homo sapiens hypothetical LOC100507525 (LOC100507525), miscRNA [XR_108784]"	chr7:143193658-143193717	hs|7q35	Agilent_HUMAN_G3V2	XR_108784	XR_108784	chr7	143193658	143193717	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6468_PI429285431	1.2060918	A	1.1963167	A	1.00679858919799	0	lncRNA	6410-1_{1..1714}	"transcript_id ""ENST00000600348.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600348.2"" | genecode_v17"	chr19	 35328793	 35330506	+	ENSG00000269086.2	ENST00000600348.2	CTC-523E23.5	CTC-523E23.5-002	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70"	NA	inter
LNCA_21_P0006981	7.4514723	P	7.558465	P	0.928521550590135	0	lncRNA	AK124485	NA	AK124485	NA	Hs.455527	XLOC_008768	NA	NA	THC2623044	NA	"BROAD Institute lincRNA (XLOC_008768), lincRNA [TCONS_00018466]"	chr10:31099424-31099365	hs|10p11.23	Agilent_HUMAN_G3V2	AK124485	AK124485	chr10	 31099365	 31099424	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002677	1.6099823	A	0.8775767	A	1.66140707133797	0	lncRNA	TCONS_00005245	NA	NA	NA	NA	XLOC_002301	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002301), lincRNA [TCONS_00005245]"	chr2:123260410-123260351	hs|2q14.3	Agilent_HUMAN_G3V2	TCONS_00005245	TCONS_00005245	chr2	123260351	123260410	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008102	0.87221354	A	0.8762478	A	0.997207570160936	0	lncRNA	TCONS_00021870	NA	NA	NA	NA	XLOC_010469	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010469), lincRNA [TCONS_00021870]"	chr13:91148621-91150497	hs|13q31.3	Agilent_HUMAN_G3V2	TCONS_00021870	TCONS_00021870	chr13	 91148621	 91150497	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42581_PI429285431	0.87223697	A	0.87481695	A	0.998213292203276	0	lncRNA	45422-1_{1..68}	ENST00000363863 ncrna:snoRNA chromosome:GRCh37:13:90489424:90489491:1 gene:ENSG00000200733 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363863 ncrna:snoRNA chromosome:GRCh37:13:90489424:90489491:1 gene:ENSG00000200733 gene_biotype:snoRNA transcript_biotype:snoRNA	chr13	 90489424	 90489491	+	ENSG00000200733	ENST00000363863	NA	NA	NA	NA	NA	inter
CUST_609_PI429285431	6.7356443	P	7.914232	P	0.441783762689782	0	lncRNA	601-1_{1..554}	"transcript_id ""ENST00000423175.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423175.1"" | genecode_v17"	chr1	235095410	235095963	-	ENSG00000238005.1	ENST00000423175.1	RP11-443B7.1	RP11-443B7.1-003	NA	NA	NA	inter
CUST_23911_PI429285431	3.2710793	P	3.1974702	P	1.05234598163604	0	lncRNA	25468-1_{1..602}	lnc-MTAP-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTAP-1:11	chr9	 22120503	 22121104	+	lnc-MTAP-1	lnc-MTAP-1:11	ENSG00000240498.2	CDKN2B-AS1	NA	NA	NA	inter
CUST_29289_PI429285431	4.1934233	P	3.389232	P	1.74616670697354	0	lncRNA	31040-1_{1..219}	n332415|AB426834|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000487356|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000487356|-0.1122220|-0.2260547	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332415|AB426834|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000487356|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000487356|-0.1122220|-0.2260547	chr10	 88277725	 88277943	-	NA	NA	NA	NA	WAPAL	NA	chr10:88267725-88281541	inner
CUST_12360_PI429285431	10.587102	P	10.655261	P	0.953854420075621	0	lncRNA	13972-1_{1..362}	lnc-STK35-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STK35-2:5	chr20	  2193555	  2193916	+	lnc-STK35-2	lnc-STK35-2:5	XLOC_013437	linc-TGM3-1	NA	NA	NA	inter
CUST_48948_PI429285431	1.358231	A	0.92162687	A	1.3534148562374	0	lncRNA	52790-1_{1..281}	hg19_lincRNAsTranscripts_TCONS_l2_00019975 range=chr3:168509929-168511902 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019975 range=chr3:168509929-168511902 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	168509929	168510209	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005106	1.5977159	A	0.92847985	A	1.59023067000821	0	lncRNA	TCONS_00012423	NA	NA	NA	NA	XLOC_005164	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005164), lincRNA [TCONS_00012423]"	chr6:8940480-8940539	hs|6p24.3	Agilent_HUMAN_G3V2	TCONS_00012423	TCONS_00012423	chr6	  8940480	  8940539	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9057_PI429285431	12.0972	P	11.000417	P	2.13877245252674	0	lncRNA	10581-1_{1..680}	lnc-SYNCRIP-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SYNCRIP-2:10	chr6	 86387142	 86387821	-	lnc-SYNCRIP-2	lnc-SYNCRIP-2:10	ENSG00000203875	SNHG5	NA	NA	NA	inter
LNCA_21_P0003988	0.90484846	A	0.929511	A	0.983050516457437	0	lncRNA	ENST00000506429	NA	NA	NA	NA	XLOC_004343	NA	ENST00000506429	THC2679494	NA	"BROAD Institute lincRNA (XLOC_004343), lincRNA [TCONS_00009383]"	chr5:37966998-37967057	hs|5p13.2	Agilent_HUMAN_G3V2	ENST00000506429	ENST00000506429	chr5	 37966998	 37967057	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24014_PI429285431	0.9092846	A	0.9168272	A	0.994785510971642	0	lncRNA	25567-1_{1..655}	lnc-GK-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GK-4:1	chrX	 31341715	 31342369	+	lnc-GK-4	lnc-GK-4:1	ENSG00000242286.1	DMD-AS2	DMD	NA	chrX:31331715-31351747	inner
LNCA_21_P0004413	0.9069356	A	1.9663835	A	0.479815643530135	0	lncRNA	TCONS_00010376	NA	NA	NA	NA	XLOC_004879	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004879), lincRNA [TCONS_00010376]"	chr5:72410498-72410439	hs|5q13.2	Agilent_HUMAN_G3V2	TCONS_00010376	TCONS_00010376	chr5	 72410439	 72410498	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45542_PI429285431	6.0043316	P	5.8117557	P	1.14280234360443	0	lncRNA	49944-2_{3001..4941}	"gi|374081859|ref|NR_046172.1| Homo sapiens RAB18, member RAS oncogene family (RAB18), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|374081859|ref|NR_046172.1| Homo sapiens RAB18, member RAS oncogene family (RAB18), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NR_046172.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014441	0.9061363	A	0.9293756	A	0.984020788849788	0	lncRNA	XR_109824	XR_109824	XR_109824	NA	NA	LOC100507233	uncharacterized LOC100507233	ENST00000497440	THC2636494	NA	"PREDICTED: Homo sapiens hypothetical LOC100507233 (LOC100507233), miscRNA [XR_109824]"	chr4:77566721-77566780	hs|4q21.1	Agilent_HUMAN_G3V2	XR_109824	XR_109824	chr4	 77566721	 77566780	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28526_PI429285431	0.91511583	A	0.922337	A	0.995007172182561	0	lncRNA	30196-1_{1..485}	n325872|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050605|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050605|-1.3451100|-0.3425673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325872|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050605|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050605|-1.3451100|-0.3425673	chr10	120107256	120107740	+	NA	NA	NA	NA	FAM204A	NA	chr10:120097256-120101839	inter
LNCA_21_P0011977	0.9007517	A	0.9213258	A	0.985840325272747	0	lncRNA	TCONS_l2_00014981	NA	NA	NA	NA	XLOC_l2_008343	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008343), lincRNA [TCONS_l2_00014981]"	chr2:171581923-171581864	hs|2q31.1	Agilent_HUMAN_G3V2	TCONS_l2_00014981	TCONS_l2_00014981	chr2	171581864	171581923	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46257_PI429285431	5.880064	P	5.938062	P	0.960596195621643	0	lncRNA	50496-1_{1..2840}	"gi|221316646|ref|NR_026644.1| Homo sapiens UBA domain containing 2 (UBAC2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|221316646|ref|NR_026644.1| Homo sapiens UBA domain containing 2 (UBAC2), transcript variant 3, non-coding RNA"	Chr13	 99853163	 99856002	+	337867	NR_026644.1	NA	NA	NA	NA	NA	inter
CUST_27098_PI429285431	0.9111282	A	0.9111148	A	1.00000928821535	0	lncRNA	28631-1_{1..728}	n324209|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000139052|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000139052|-0.9514180|-0.3256334	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324209|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000139052|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000139052|-0.9514180|-0.3256334	chr7	 27418307	 27419034	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31672_PI429285431	0.8893233	A	0.9050808	A	0.989137164685297	0	lncRNA	33420-1_{1..1486}	n338195|BC048192|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|587|NULL|-0.7834520|-0.1754029	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338195|BC048192|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|587|NULL|-0.7834520|-0.1754029	chr22	 51009427	 51010912	+	NA	NA	NA	NA	CHKB	"hg19_refFlat_CPT1B:range=chr22:51007767-510163445'pad=0,hg19_refFlat_CPT1B:range=chr22:51007767-510163445'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70chr22:51017387-51020882"	NA	inter
LNCA_21_P0010915	2.9319282	A	1.2518669	A	3.20441566283802	0	lncRNA	ENST00000425137	NA	NA	NA	NA	XLOC_l2_001518	NA	ENST00000425137	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001518), lincRNA [TCONS_l2_00003921]"	chr10:28311423-28332874	hs|10p12.1	Agilent_HUMAN_G3V2	ENST00000425137	ENST00000425137	chr10	 28311423	 28332874	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41685_PI429285431	0.8886878	A	0.89555436	A	0.995251771942254	0	lncRNA	43151-1_{1..91}	ENST00000459295 ncrna:miRNA chromosome:GRCh37:8:113655722:113655812:1 gene:ENSG00000238399 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459295 ncrna:miRNA chromosome:GRCh37:8:113655722:113655812:1 gene:ENSG00000238399 gene_biotype:miRNA transcript_biotype:miRNA	chr8	113655722	113655812	+	ENSG00000238399	ENST00000459295	NA	NA	CSMD3	NA	chr8:113645722-113665812	inner
CUST_37458_PI429285431	0.90521663	A	1.2596188	A	0.782193704677063	0	lncRNA	38557-1_{1..617}	n345908|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1457|NULL|-1.3495200|-0.1848332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n345908|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1457|NULL|-1.3495200|-0.1848332	chr2	242486061	242486677	-	NA	NA	NA	NA	BOK	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50chr2:242498192-242499482"	NA	inter
CUST_16178_PI429285431	6.054579	P	6.1673217	P	0.924828203528801	0	lncRNA	17883-1_{1..514}	lnc-RASA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASA3-1:1	chr13	115099310	115099823	-	lnc-RASA3-1	lnc-RASA3-1:1	XLOC_010746	linc-RASA3-3	ZNF828	NA	chr13:115089310-115092803	inter
LNCA_21_P0010934	0.88633317	A	1.0025935	A	0.922576001555999	0	lncRNA	ENST00000446200	NA	NA	NA	NA	XLOC_l2_001851	NA	ENST00000446200	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001851), lincRNA [TCONS_l2_00004096]"	chr10:6167993-6167934	hs|10p15.1	Agilent_HUMAN_G3V2	ENST00000446200	ENST00000446200	chr10	  6167934	  6167993	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009389	4.5064993	P	4.752802	P	0.843054205724621	0	lncRNA	TCONS_00025894	NA	NA	NA	NA	XLOC_012171	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012171), lincRNA [TCONS_00025894]"	chr17:31271986-31276797	hs|17q11.2	Agilent_HUMAN_G3V2	TCONS_00025894	TCONS_00025894	chr17	 31271986	 31276797	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008852	6.4260836	P	6.5632467	P	0.90930544691282	0	lncRNA	TCONS_00024148	NA	NA	NA	NA	XLOC_011515	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011515), lincRNA [TCONS_00024148]"	chr15:68776902-68776843	hs|15q23	Agilent_HUMAN_G3V2	TCONS_00024148	TCONS_00024148	chr15	 68776843	 68776902	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34431_PI429285431	0.89089876	A	0.9068595	A	0.98899782957144	0	lncRNA	35911-1_{1..2109}	n341308|BC067285|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3777|NULL|-0.8093030|-0.3395126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341308|BC067285|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3777|NULL|-0.8093030|-0.3395126	chr7	123389121	123391229	+	NA	NA	NA	NA	WASL	NA	chr7:123379121-123389116	inter
CUST_48690_PI429285431	1.2554419	A	1.4027802	A	0.90291475931698	0	lncRNA	52531-1_{1..1482}	hg19_lincRNAsTranscripts_TCONS_l2_00015432 range=chr2:107103833-107124137 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015432 range=chr2:107103833-107124137 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	107103833	107105314	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22458_PI429285431	0.8906532	A	0.885404	A	1.0036450954408	0	lncRNA	24046-1_{1..804}	lnc-AC015987.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC015987.1-1:1	chr7	135616957	135617760	+	lnc-AC015987.1-1	lnc-AC015987.1-1:1	ENSG00000224746.1	AC015987.1	LUZP6	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00chr7:135611503-135627629"	NA	inner
CUST_8944_PI429285431	0.8769677	A	0.8825622	A	0.996129697101626	0	lncRNA	10478-1_{1..1331}	lnc-RP11-116D17.1.1-11:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-RP11-116D17.1.1-11:1	chr12	115205089	115206419	+	lnc-RP11-116D17.1.1-11	lnc-RP11-116D17.1.1-11:1	ENSG00000250755	ENST00000508109	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80"	NA	inter
CUST_17123_PI429285431	1.0618029	A	0.8769918	A	1.13666813327891	0	lncRNA	18833-1_{1..2227}	lnc-AFM-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AFM-1:4	chr4	 74399609	 74401835	+	lnc-AFM-1	lnc-AFM-1:4	XLOC_003572	linc-IL8-2	NA	NA	NA	inter
CUST_31559_PI429285431	8.413866	P	8.931101	P	0.698709664126668	0	lncRNA	33317-1_{1..852}	n338052|AK024621|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|439|NULL|-1.0781100|-0.4103097	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338052|AK024621|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|439|NULL|-1.0781100|-0.4103097	chr1	 89510764	 89511615	-	NA	NA	NA	NA	GBP1	NA	chr1:89517987-89521601	inter
CUST_25117_PI429285431	0.93912804	A	0.9296696	A	1.00657762922631	0	lncRNA	26655-1_{1..556}	lnc-ZNF569-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF569-1:1	chr19	 37959883	 37960438	-	lnc-ZNF569-1	lnc-ZNF569-1:1	ENSG00000240185.1	AC008806.2	ZNF569	NA	chr19:37949883-37958339	inner
LNCA_21_P0014196	0.8735299	A	0.8750044	A	0.998978476592896	0	lncRNA	XR_108798	XR_108798	XR_108798	NA	Hs.677513	LOC100506413	uncharacterized LOC100506413	ENST00000452714	THC2608789	NA	"PREDICTED: Homo sapiens hypothetical LOC100506413 (LOC100506413), miscRNA [XR_108798]"	chr7:111461499-111461558	hs|7q31.1	Agilent_HUMAN_G3V2	XR_108798	XR_108798	chr7	111461499	111461558	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36282_PI429285431	3.3665538	P	3.702979	P	0.792001352989325	0	lncRNA	37516-3_{6001..8218}	n344810|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_359|NULL|-1.3390700|-0.2842366	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344810|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_359|NULL|-1.3390700|-0.2842366	chr3	195405498	195407715	+	NA	NA	NA	NA	MUC20	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60chr3:195447753-195452174"	NA	inter
CUST_15487_PI429285431	1.0403057	A	1.1010892	A	0.958743302820139	0	lncRNA	17176-1_{1..2368}	lnc-C6orf146-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C6orf146-1:2	chr6	  4019054	  4021421	-	lnc-C6orf146-1	lnc-C6orf146-1:2	XLOC_005587	linc-C6orf145-3	PRPF4B	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr6:4021569-4029294"	NA	inter
CUST_48788_PI429285431	1.243593	A	0.8907796	A	1.27704857343641	0	lncRNA	52626-1_{1..685}	hg19_lincRNAsTranscripts_TCONS_l2_00014248 range=chr2:220360912-220362059 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014248 range=chr2:220360912-220362059 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	220360912	220361596	+	NA	NA	NA	NA	SPEG	NA	chr2:220350912-220358354	inter
CUST_7758_PI429285431	0.88170636	A	0.8908587	A	0.993676161500743	0	lncRNA	9385-1_{1..1375}	lnc-PTAR1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-PTAR1-2:1	chr9	 72435566	 72436940	-	lnc-PTAR1-2	lnc-PTAR1-2:1	ENSG00000225626	XLOC_007727	C9orf135	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60chr9:72435731-72445655"	NA	inter
CUST_47096_PI429285431	5.8092957	P	5.943063	P	0.9114482811501	0	lncRNA	51178-1_{1..3000}	"gi|358001079|ref|NR_045557.1| Homo sapiens URI1, prefoldin-like chaperone (URI1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|358001079|ref|NR_045557.1| Homo sapiens URI1, prefoldin-like chaperone (URI1), transcript variant 4, non-coding RNA"	Chr19	 30433146	 30436145	+	8725	NR_045557.1	NA	NA	NA	NA	NA	inter
CUST_13321_PI429285431	9.675906	P	9.56703	P	1.0783877400148	0	lncRNA	14956-1_{1..310}	lnc-PPP1R26-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP1R26-2:1	chr9	138307253	138307562	+	lnc-PPP1R26-2	lnc-PPP1R26-2:1	XLOC_007607	linc-KIAA0649-2	NA	NA	NA	inter
LNCA_21_P0003534	0.8749505	A	2.5621715	A	0.310524498943583	0	lncRNA	XR_109804	XR_109804	XR_109804	NA	Hs.380602	LOC100506107	uncharacterized LOC100506107	ENST00000515840	THC2647887	NA	"PREDICTED: Homo sapiens hypothetical LOC100506107 (LOC100506107), miscRNA [XR_109804]"	chr4:171663922-171663863	hs|4q33	Agilent_HUMAN_G3V2	XR_109804	XR_109804	chr4	171663863	171663922	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44872_PI429285431	9.402718	P	9.390834	P	1.0082713815013	0	lncRNA	49396-1_{1..2155}	"gi|190194406|ref|NR_023385.1| Homo sapiens ring finger protein 216 pseudogene 1 (RNF216P1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|190194406|ref|NR_023385.1| Homo sapiens ring finger protein 216 pseudogene 1 (RNF216P1), transcript variant 3, non-coding RNA"	Chr7	  5013616	  5015770	+	441191	NR_023385.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014937	1.993517	A	2.6796458	A	0.621519344370702	0	lncRNA	XR_133385	XR_133385	XR_133385	NA	Hs.508131	LOC100506196	uncharacterized LOC100506196	NA	THC2662159	NA	"PREDICTED: Homo sapiens hypothetical LOC100506196 (LOC100506196), miscRNA [XR_133385]"	chr4:178733289-178733230	hs|4q34.3	Agilent_HUMAN_G3V2	XR_133385	XR_133385	chr4	178733230	178733289	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16511_PI429285431	3.2101548	P	2.3700638	A	1.790163055324	0	lncRNA	18211-1_{1..358}	lnc-FLRT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FLRT2-1:1	chr14	 85995348	 85995705	+	lnc-FLRT2-1	lnc-FLRT2-1:1	XLOC_010890	linc-FLRT2-1	FLRT2	NA	chr14:85996488-86005625	inter
CUST_44863_PI429285431	0.87284994	A	1.891133	A	0.493703555475488	0	lncRNA	49388-1_{1..3000}	"gi|224967046|ref|NR_027329.1| Homo sapiens uncharacterized LOC114796 (KIAA1908), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224967046|ref|NR_027329.1| Homo sapiens uncharacterized LOC114796 (KIAA1908), transcript variant 1, non-coding RNA"	Chr7	  1609709	  1612708	+	114796	NR_027329.1	NA	NA	NA	NA	NA	inter
LNCA_19_P00320731	6.502734	P	6.4174366	P	1.06090641616862	0	lncRNA	TCONS_l2_00015793	NA	NA	NA	NA	XLOC_l2_008008	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008008), lincRNA [TCONS_l2_00015793]"	chr2:47550626-47550567	hs|2p21	Agilent_HUMAN_G3V2	TCONS_l2_00015793	TCONS_l2_00015793	chr2	 47550567	 47550626	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014852	0.8756466	A	0.8776357	A	0.99862221096718	0	lncRNA	XR_132724	XR_132724	XR_132724	NA	NA	LOC100652782	uncharacterized LOC100652782	ENST00000513535	THC2631172	NA	"PREDICTED: Homo sapiens hypothetical LOC100652782 (LOC100652782), miscRNA [XR_132724]"	chr5:180113307-180113366	hs|5q35.3	Agilent_HUMAN_G3V2	XR_132724	XR_132724	chr5	180113307	180113366	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6905_PI429285431	6.3605824	P	6.696225	P	0.792431096202266	0	lncRNA	6855-1_{1..2198}	"transcript_id ""ENST00000451618.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451618.1"" | genecode_v17"	chr21	 47456966	 47459163	+	ENSG00000224413.1	ENST00000451618.1	AP001476.2	AP001476.2-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40"	NA	inter
CUST_26291_PI429285431	0.900244	A	0.89054215	A	1.00674747227973	0	lncRNA	27797-1_{1..755}	lnc-THAP10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-THAP10-1:1	chr15	 71141571	 71142325	-	lnc-THAP10-1	lnc-THAP10-1:1	ENSG00000259744.1	RP11-138H8.6	THAP10	NA	chr15:71150976-71152109	inner
CUST_37757_PI429285431	7.648366	P	7.530693	P	1.08498342261303	0	lncRNA	38853-1_{1..451}	n346264|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1814|NULL|-1.3538300|-0.1401603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346264|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1814|NULL|-1.3538300|-0.1401603	chr22	 17082249	 17082699	+	NA	NA	NA	NA	CCT8L2	NA	chr22:17072249-17073700	inter
CUST_44605_PI429285431	9.326863	P	7.960554	P	2.5781013859856	0	lncRNA	49180-2_{3001..3947}	"gi|372626427|ref|NR_045994.1| Homo sapiens eukaryotic translation termination factor 1 (ETF1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372626427|ref|NR_045994.1| Homo sapiens eukaryotic translation termination factor 1 (ETF1), transcript variant 2, non-coding RNA"	Chr5	137844782	137845728	-	2107	NR_045994.1	NA	NA	NA	NA	NA	inter
CUST_51074_PI429285431	0.88170063	A	1.0816419	A	0.870586002854596	0	lncRNA	54712-1_{1..1019}	hg19_lincRNAsTranscripts_TCONS_l2_00006810 range=chr13:42550630-42555824 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006810 range=chr13:42550630-42555824 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 42550630	 42551648	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005661	0.87101984	A	0.87497485	A	0.997262350186051	0	lncRNA	TCONS_00014629	NA	NA	NA	NA	XLOC_006724	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006724), lincRNA [TCONS_00014629]"	chr8:16425069-16425128	hs|8p22	Agilent_HUMAN_G3V2	TCONS_00014629	TCONS_00014629	chr8	 16425069	 16425128	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35329_PI429285431	1.8642229	A	1.7350261	A	1.09368463832396	0	lncRNA	36738-1_{1..1098}	n342367|BC035261|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4859|NULL|-0.8834400|-0.3180705	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n342367|BC035261|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4859|NULL|-0.8834400|-0.3180705	chr13	 19479578	 19480675	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9546_PI429285431	1.1000175	A	0.90252054	A	1.14670711980333	0	lncRNA	11059-1_{1..774}	lnc-OSBPL1A-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-OSBPL1A-4:1	chr18	 22097926	 22098699	-	lnc-OSBPL1A-4	lnc-OSBPL1A-4:1	XLOC_012792	linc-OSBPL1A-2	NA	NA	NA	inter
CUST_26497_PI429285431	1.5069432	A	1.3783679	A	1.09321359032367	0	lncRNA	28006-1_{1..548}	lnc-RARS-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RARS-4:4	chr5	168450836	168451383	+	lnc-RARS-4	lnc-RARS-4:4	ENSG00000248222.1	CTB-174D11.1	SLIT3	NA	chr5:168440836-168461093	inner
CUST_18335_PI429285431	7.7604213	P	7.7019672	P	1.04134931927419	0	lncRNA	20064-1_{1..428}	lnc-C14orf49-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C14orf49-4:2	chr14	 96000930	 96001357	-	lnc-C14orf49-4	lnc-C14orf49-4:2	ENSG00000247092	SNHG10	GLRX5	NA	chr14:96001323-96011055	inter
CUST_31327_PI429285431	8.482659	P	8.499132	P	0.988646726891685	0	lncRNA	33110-1_{1..705}	n337794|BC033967|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|176|NULL|-0.9034140|-0.2924093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337794|BC033967|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|176|NULL|-0.9034140|-0.2924093	chrX	100088892	100089596	+	NA	NA	NA	NA	CSTF2	NA	chrX:100078892-100095924	inner
CUST_45023_PI429285431	8.847004	P	9.123892	P	0.825369481508803	0	lncRNA	49524-1_{1..3000}	"gi|304434827|ref|NR_036569.1| Homo sapiens paired immunoglobin-like type 2 receptor beta (PILRB), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|304434827|ref|NR_036569.1| Homo sapiens paired immunoglobin-like type 2 receptor beta (PILRB), transcript variant 1, non-coding RNA"	Chr7	 99933688	 99936687	+	101752399	NR_036569.1	NA	NA	NA	"hg19_refFlat_LOC100289561:range=chr7:102006509-1020209875'pad=0,hg19_refFlat_LOC100289561:range=chr7:102006509-1020209875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_18165_PI429285431	1.0075915	A	0.9408527	A	1.04734648780597	0	lncRNA	19900-1_{1..1436}	lnc-RP11-1396O13.13.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-RP11-1396O13.13.1-1:2	chr4	  9382574	  9384009	-	lnc-RP11-1396O13.13.1-1	lnc-RP11-1396O13.13.1-1:2	ENSG00000226350	AC108519.1	NA	NA	NA	inter
CUST_11072_PI429285431	1.1524494	A	1.0918608	A	1.04289115949832	0	lncRNA	12624-1_{1..370}	lnc-TLE3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TLE3-3:1	chr15	 70590137	 70590506	-	lnc-TLE3-3	lnc-TLE3-3:1	XLOC_011520	linc-TLE3-2	NA	NA	NA	inter
LNCA_21_P0005167	7.2927136	P	6.7796593	P	1.42706821654637	0	lncRNA	BC035191	NA	BC035191	NA	Hs.714205	XLOC_005737	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005737), lincRNA [TCONS_00012737]"	chr6:45541196-45541137	hs|6p21.1	Agilent_HUMAN_G3V2	BC035191	BC035191	chr6	 45541137	 45541196	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26429_PI429285431	0.914643	A	0.91458416	A	1.00004078561181	0	lncRNA	27936-1_{1..617}	lnc-PLEKHF2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLEKHF2-2:2	chr8	 96665642	 96666258	+	lnc-PLEKHF2-2	lnc-PLEKHF2-2:2	ENSG00000253773.1	KB-1047C11.2	NA	NA	NA	inter
LNCA_21_P0007336	1.1205933	A	0.92994416	A	1.1412771174951	0	lncRNA	TCONS_00019609	NA	NA	NA	NA	XLOC_009411	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009411), lincRNA [TCONS_00019609]"	chr11:33843584-33836499	hs|11p13	Agilent_HUMAN_G3V2	TCONS_00019609	TCONS_00019609	chr11	 33836499	 33843584	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43527_PI429285431	5.406775	P	3.74886	P	3.15560143775241	0	lncRNA	48311-2_{3001..3312}	"gi|387598056|ref|NR_048570.1| Homo sapiens exostoses (multiple)-like 2 (EXTL2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387598056|ref|NR_048570.1| Homo sapiens exostoses (multiple)-like 2 (EXTL2), transcript variant 6, non-coding RNA"	Chr1	101340928	101341239	-	2135	NR_048570.1	NA	NA	NA	NA	NA	inter
CUST_46875_PI429285431	5.8603177	P	5.3910117	P	1.38444332954732	0	lncRNA	51003-2_{3001..6000}	"gi|373838807|ref|NR_046054.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 30, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373838807|ref|NR_046054.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 30, non-coding RNA"	Chr17	 48641429	 48644428	+	8913	NR_046054.1	NA	NA	NA	NA	NA	inter
CUST_7609_PI429285431	0.8908615	A	0.9067712	A	0.989032819185128	0	lncRNA	9244-1_{1..251}	lnc-C8orf74-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C8orf74-1:2	chr8	 10628705	 10628955	+	lnc-C8orf74-1	lnc-C8orf74-1:2	ENSG00000248896	CTD-2135J3.3	PINX1	NA	chr8:10622884-10638902	inner
CUST_15923_PI429285431	4.7133	P	4.1352534	P	1.49282660180064	0	lncRNA	17618-1_{1..261}	lnc-GALNT10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GALNT10-1:1	chr5	153514405	153514665	+	lnc-GALNT10-1	lnc-GALNT10-1:1	XLOC_004609	linc-GALNT10	NA	NA	NA	inter
LNCA_21_P0003543	0.8988616	A	0.9184651	A	0.986503790895312	0	lncRNA	ENST00000510203	NA	NA	NA	NA	XLOC_004181	NA	ENST00000510203	NA	NA	"BROAD Institute lincRNA (XLOC_004181), lincRNA [TCONS_00007908]"	chr4:177787851-177787792	hs|4q34.3	Agilent_HUMAN_G3V2	ENST00000510203	ENST00000510203	chr4	177787792	177787851	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5199_PI429285431	0.898841	A	0.9139232	A	0.989600270652884	0	lncRNA	5140-1_{1..963}	"transcript_id ""ENST00000561386.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000561386.1"" | genecode_v17"	chr15	 62022049	 62023011	+	ENSG00000259284.1	ENST00000561386.1	RP11-162I7.1	RP11-162I7.1-001	NA	NA	NA	inter
CUST_13192_PI429285431	10.299546	P	9.822874	P	1.39152998835604	0	lncRNA	14819-1_{1..430}	lnc-CLCN3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CLCN3-5:1	chr4	171293161	171293590	+	lnc-CLCN3-5	lnc-CLCN3-5:1	XLOC_003776	linc-GALNTL6-3	NA	NA	NA	inter
CUST_19289_PI429285431	1.193329	A	1.5163451	A	0.799396909297302	0	lncRNA	20956-2_{3001..3119}	lnc-TCL1B-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TCL1B-1:5	chr14	 96161268	 96161386	+	lnc-TCL1B-1	lnc-TCL1B-1:5	ENSG00000259084.1	RP11-1070N10.6	TCL1B	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90chr14:96152754-96158980"	NA	inner
CUST_40731_PI429285431	10.237715	P	10.275287	P	0.974293266326963	0	lncRNA	41465-1_{1..1879}	n410328|NR_037192|lncRNA|Homosapiens||RefGeneNoncode|NR_037192||7.0377400|-0.1222883	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410328|NR_037192|lncRNA|Homosapiens||RefGeneNoncode|NR_037192||7.0377400|-0.1222883	chr3	 52009041	 52010919	+	NA	NA	NA	NA	ACY1	NA	chr3:52017300-52023218	inner
CUST_40129_PI429285431	1.0552046	A	1.2264388	A	0.888082617186547	0	lncRNA	40969-1_{1..901}	n407702|NR_027171|lncRNA|Homosapiens||RefGeneNoncode|NR_027171||1.9226800|-0.1699367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n407702|NR_027171|lncRNA|Homosapiens||RefGeneNoncode|NR_027171||1.9226800|-0.1699367	chr17	 16342300	 16343200	+	NA	NA	NA	NA	C17orf76	NA	chr17:16345328-16383962	inner
LNCA_21_P0005014	0.88830125	A	0.90399456	A	0.98918117546049	0	lncRNA	THC2672086	NA	NA	NA	NA	XLOC_005647	NA	NA	THC2672086	NA	"BROAD Institute lincRNA (XLOC_005647), lincRNA [TCONS_00012113]"	chr6:025997812-025997753	hs|6p22.2	Agilent_HUMAN_G3V2	THC2672086	THC2672086	chr6	 25997753	 25997812	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33943_PI429285431	1.1966546	A	0.9148386	A	1.2157242209449	0	lncRNA	35483-1_{1..1029}	n340743|BC038557|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3206|NULL|-1.1743800|-0.2767723	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n340743|BC038557|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3206|NULL|-1.1743800|-0.2767723	chr5	172720129	172721157	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47011_PI429285431	2.8949897	A	2.4083803	A	1.40114804629264	0	lncRNA	51106-2_{3001..3474}	"gi|213512758|ref|NR_024484.1| Homo sapiens uncharacterized LOC400657 (LOC400657), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|213512758|ref|NR_024484.1| Homo sapiens uncharacterized LOC400657 (LOC400657), non-coding RNA"	Chr18	 72262010	 72262483	-	400657	NR_024484.1	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	inter
CUST_33896_PI429285431	2.5452611	A	2.885339	A	0.789998653813752	0	lncRNA	35440-1_{1..1983}	n340688|BC039364|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3151|NULL|-1.0462900|-0.2445416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340688|BC039364|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3151|NULL|-1.0462900|-0.2445416	chr5	151056505	151058487	+	NA	NA	NA	NA	SPARC	NA	chr5:151046505-151066517	inner
CUST_52150_PI429285431	0.91327757	A	0.90385157	A	1.00655499588367	0	lncRNA	55674-1_{1..488}	hg19_lincRNAsTranscripts_TCONS_l2_00017909 range=chr22:21673556-21679433 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017909 range=chr22:21673556-21679433 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 21673556	 21674043	-	NA	NA	NA	NA	RIMBP3B	NA	chr22:21663556-21689433	inter
CUST_13035_PI429285431	0.88682234	A	1.262961	A	0.770497050950311	0	lncRNA	14660-1_{1..444}	lnc-ID3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ID3-1:1	chr1	 23880963	 23881406	-	lnc-ID3-1	lnc-ID3-1:1	XLOC_000737	linc-E2F2-3	ID3	NA	chr1:23884409-23886322	inter
CUST_49099_PI429285431	2.8440144	A	4.0019736	P	0.448146023356519	0	lncRNA	52923-1_{1..589}	hg19_lincRNAsTranscripts_TCONS_l2_00020447 range=chr4:23122712-23125058 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020447 range=chr4:23122712-23125058 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 23122712	 23123300	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29436_PI429285431	7.716181	P	7.8008966	P	0.942970406351229	0	lncRNA	31192-1_{1..445}	n332821|AF059253|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064829_09|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064829_09|-1.0028700|-0.1684410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332821|AF059253|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000064829_09|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000064829_09|-1.0028700|-0.1684410	chr6	  3271844	  3272288	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3269207-3282493	inner
CUST_37624_PI429285431	4.215112	P	2.999528	A	2.32234772012586	0	lncRNA	38721-1_{1..218}	n346102|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1652|NULL|-1.3612900|-0.2825823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346102|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1652|NULL|-1.3612900|-0.2825823	chr14	 21189056	 21189273	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27604_PI429285431	3.71297	P	4.0990806	P	0.765189721628484	0	lncRNA	29183-1_{1..396}	n324807|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194070|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194070|-1.0234300|-0.3257314	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324807|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194070|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194070|-1.0234300|-0.3257314	chr21	 34474914	 34475309	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31221_PI429285431	1.1395693	A	2.1689992	A	0.4899037024668	0	lncRNA	33012-1_{1..2418}	n337669|AF019616|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|51|NULL|-1.3484800|-0.3674197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n337669|AF019616|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|51|NULL|-1.3484800|-0.3674197	chr15	 25380788	 25383205	+	NA	NA	NA	NA	SNRPN	NA	chr15:25370788-25393202	inter
LNCA_21_P0009705	0.87347734	A	0.8751155	A	0.998865158434972	0	lncRNA	TCONS_00026983	NA	NA	NA	NA	XLOC_013034	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013034), lincRNA [TCONS_00026983]"	chr19:30576597-30576656	hs|19q12	Agilent_HUMAN_G3V2	TCONS_00026983	TCONS_00026983	chr19	 30576597	 30576656	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6834_PI429285431	5.2714386	P	6.618046	P	0.393215637119184	0	lncRNA	6782-1_{1..572}	"transcript_id ""ENST00000433344.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433344.1"" | genecode_v17"	chr21	 29327240	 29327811	+	ENSG00000234083.1	ENST00000433344.1	AJ006995.3	AJ006995.3-001	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80"	NA	inter
LNCA_21_P0007541	5.4390073	P	5.749922	P	0.806130492915734	0	lncRNA	ENST00000537655	NA	NA	NA	NA	XLOC_009707	NA	ENST00000537655	NA	NA	"BROAD Institute lincRNA (XLOC_009707), lincRNA [TCONS_00020375]"	chr12:34209170-34209229	hs|12p11.1	Agilent_HUMAN_G3V2	ENST00000537655	ENST00000537655	chr12	 34209170	 34209229	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29969_PI429285431	10.925766	P	10.170162	P	1.68833828553845	0	lncRNA	31735-1_{1..230}	n334200|S54711|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000215740|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000215740|-1.3536100|-0.4472396	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334200|S54711|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000215740|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000215740|-1.3536100|-0.4472396	chr17	 66528680	 66528909	+	NA	NA	NA	NA	FAM20A	NA	chr17:66531257-66538910	inner
LNCA_21_P0008324	0.87407357	A	0.874664	A	0.999590828843541	0	lncRNA	TCONS_00022478	NA	NA	NA	NA	XLOC_010807	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010807), lincRNA [TCONS_00022478]"	chr14:38208320-38208379	hs|14q21.1	Agilent_HUMAN_G3V2	TCONS_00022478	TCONS_00022478	chr14	 38208320	 38208379	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11464_PI429285431	5.825906	P	6.339241	P	0.700601023077126	0	lncRNA	13029-1_{1..789}	lnc-STAG3L4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STAG3L4-1:2	chr7	 66804784	 66805572	+	lnc-STAG3L4-1	lnc-STAG3L4-1:2	XLOC_006138	linc-AUTS2-5	NA	NA	NA	inter
CUST_25765_PI429285431	2.1950831	A	2.6545513	A	0.727254286584036	0	lncRNA	27290-1_{1..763}	lnc-CES1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CES1-3:1	chr16	 55367413	 55368175	-	lnc-CES1-3	lnc-CES1-3:1	ENSG00000259283.2	RP11-26L20.3	IRX6	NA	chr16:55358471-55364672	inter
CUST_37350_PI429285431	2.886229	A	1.8646545	A	2.03013335782726	0	lncRNA	38454-1_{1..479}	n345793|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1342|NULL|-1.3500500|-0.2130676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345793|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1342|NULL|-1.3500500|-0.2130676	chr16	 29098676	 29099154	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010282	0.87580496	A	1.54069	A	0.630738962342762	0	lncRNA	ENST00000440714	NA	NA	NA	NA	XLOC_014081	NA	ENST00000440714	NA	NA	"BROAD Institute lincRNA (XLOC_014081), lincRNA [TCONS_00029140]"	chr21:40401032-40400973	hs|21q22.2	Agilent_HUMAN_G3V2	ENST00000440714	ENST00000440714	chr21	 40400973	 40401032	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25829_PI429285431	4.249648	P	4.6441684	P	0.760742230706599	0	lncRNA	27350-1_{1..294}	lnc-LRCH1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRCH1-4:1	chr13	 47430225	 47430518	+	lnc-LRCH1-4	lnc-LRCH1-4:1	ENSG00000224517.1	HTR2A-AS1	HTR2A	NA	chr13:47420225-47440434	inner
CUST_35586_PI429285431	5.894042	P	5.437685	P	1.37207277085485	0	lncRNA	37000-1_{1..607}	n342720|CR595591|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5223|NULL|0.0777509|-0.1848645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n342720|CR595591|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5223|NULL|0.0777509|-0.1848645	chr17	 66110552	 66111158	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34231_PI429285431	1.8129807	A	1.53337	A	1.21386728758109	0	lncRNA	35741-1_{1..3000}	n341091|AY010115|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3557|NULL|-1.2876700|-0.3616712	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341091|AY010115|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3557|NULL|-1.2876700|-0.3616712	chr11	 89926781	 89929780	+	NA	NA	NA	NA	NAALAD2	NA	chr11:89916781-89925779	inter
CUST_12556_PI429285431	0.88568217	A	0.89035696	A	0.996764926654787	0	lncRNA	14166-3_{6001..6792}	lnc-KLF6-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF6-7:2	chr10	  4291696	  4292487	-	lnc-KLF6-7	lnc-KLF6-7:2	XLOC_008700	linc-KLF6-2	NA	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-94.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40"	NA	inter
CUST_33590_PI429285431	0.8712843	A	0.87388015	A	0.99820231167214	0	lncRNA	35155-1_{1..278}	n340344|AF056440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2805|NULL|-1.3288600|-0.6288464	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340344|AF056440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2805|NULL|-1.3288600|-0.6288464	chr5	  9131996	  9132273	-	NA	NA	NA	NA	SEMA5A	NA	chr5:9121996-9142274	inner
CUST_23478_PI429285431	4.6963315	P	4.8986516	P	0.869151694434766	0	lncRNA	25045-1_{1..312}	lnc-NUAK1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUAK1-2:1	chr12	106640493	106640804	-	lnc-NUAK1-2	lnc-NUAK1-2:1	ENSG00000258355.1	RP11-651L5.2	CKAP4	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-61.50chr12:106631659-106641713"	NA	inner
CUST_50697_PI429285431	0.87615436	A	0.8755673	A	1.00040700178658	0	lncRNA	54368-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00003055 range=chr10:52388816-52395863 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003055 range=chr10:52388816-52395863 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 52388816	 52391815	+	NA	NA	NA	NA	SGMS1	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_SHQ1:range=chr3:72799435-728974915'pad=0,hg19_refFlat_SHQ1:range=chr3:72799435-728974915'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.70chr10:52378816-52383737"	NA	inter
LNCA_21_P0011216	2.7626839	A	3.7131343	P	0.517470885658641	0	lncRNA	ENST00000411525	XR_110134	XR_110134	NA	NA	XLOC_l2_003897	NA	ENST00000411525	THC2771431	NA	"PREDICTED: Homo sapiens hypothetical LOC100505610, transcript variant 2 (LOC100505610), miscRNA [XR_110134]"	chr13:21904772-21904713	hs|13q12.11	Agilent_HUMAN_G3V2	ENST00000411525	ENST00000411525	chr13	 21904713	 21904772	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002823	4.7837543	P	4.9139853	P	0.913685141993794	0	lncRNA	ENST00000438488	NA	NA	NA	NA	XLOC_002968	NA	ENST00000438488	NA	NA	"BROAD Institute lincRNA (XLOC_002968), lincRNA [TCONS_00005691]"	chr3:191286387-191287438	hs|3q28	Agilent_HUMAN_G3V2	ENST00000438488	ENST00000438488	chr3	191286387	191287438	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29194_PI429285431	1.0362884	A	0.8970811	A	1.10129983185309	0	lncRNA	30940-1_{1..477}	n326710|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000004931|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000004931|0.4153150|-0.2811608	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326710|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000004931|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000004931|0.4153150|-0.2811608	chr1	  8200836	  8201312	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80"	NA	inter
CUST_30074_PI429285431	4.6444244	P	4.369067	P	1.2102938791579	0	lncRNA	31843-1_{1..983}	n334591|U78550|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221430|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221430|1.1638400|-0.1102298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334591|U78550|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221430|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221430|1.1638400|-0.1102298	chr11	  1269190	  1270172	+	NA	NA	NA	NA	MUC5B	NA	chr11:1259190-1280173	inner
CUST_42947_PI429285431	4.2838326	P	3.574486	P	1.6350634253009	0	lncRNA	46067-1_{1..136}	ENST00000384418 ncrna:snoRNA chromosome:GRCh37:21:41885071:41885206:1 gene:ENSG00000207147 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384418 ncrna:snoRNA chromosome:GRCh37:21:41885071:41885206:1 gene:ENSG00000207147 gene_biotype:snoRNA transcript_biotype:snoRNA	chr21	 41885071	 41885206	+	ENSG00000207147	ENST00000384418	NA	NA	DSCAM	NA	chr21:41875071-41895206	inter
CUST_33430_PI429285431	6.5072947	P	5.590978	P	1.88729075384371	0	lncRNA	35008-1_{1..1514}	n340160|BC017432|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2620|NULL|5.7767200|-0.2172858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340160|BC017432|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2620|NULL|5.7767200|-0.2172858	chr4	 87856162	 87857675	+	NA	NA	NA	NA	AFF1	NA	chr4:87856154-88022976	inner
CUST_40616_PI429285431	4.2202706	P	4.350632	P	0.913602561022224	0	lncRNA	41360-3_{6001..6348}	n410096|NR_036527|lncRNA|Homosapiens||RefGeneNoncode|NR_036527||24.8797000|-0.1832447	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410096|NR_036527|lncRNA|Homosapiens||RefGeneNoncode|NR_036527||24.8797000|-0.1832447	chr9	100006707	100007054	+	NA	NA	NA	NA	C9orf174	NA	chr9:100069910-100139577	inner
LNCA_21_P0012755	0.90542555	A	0.9299747	A	0.983127783291721	0	lncRNA	XR_133383	XR_133383	XR_133383	NA	Hs.449238	LOC646890	"axin interactor, dorsalization associated pseudogene"	NA	THC2506799	NA	"PREDICTED: Homo sapiens axin interactor, dorsalization-associated protein-like (LOC646890), miscRNA [XR_133383]"	chr4:159198334-159198393	hs|4q32.1	Agilent_HUMAN_G3V2	XR_133383	XR_133383	chr4	159198334	159198393	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003980	0.9066613	A	0.93089855	A	0.983340351225825	0	lncRNA	ENST00000502100	NA	NA	NA	NA	XLOC_004321	NA	ENST00000502100	NA	NA	"BROAD Institute lincRNA (XLOC_004321), lincRNA [TCONS_00009373]"	chr5:25302384-25302443	hs|5p14.1	Agilent_HUMAN_G3V2	ENST00000502100	ENST00000502100	chr5	 25302384	 25302443	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33558_PI429285431	0.9109843	A	0.920064	A	0.993726194564912	0	lncRNA	35125-1_{1..1488}	n340306|AK098578|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2767|NULL|-0.9661650|-0.1830641	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340306|AK098578|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2767|NULL|-0.9661650|-0.1830641	chr5	  1858522	  1860009	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_896_PI429285431	2.523807	A	2.126587	A	1.31696773429151	0	lncRNA	885-1_{1..424}	"transcript_id ""ENST00000416845.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416845.1"" | genecode_v17"	chr2	 62690262	 62690685	+	ENSG00000228541.1	ENST00000416845.1	AC093159.1	AC093159.1-001	NA	NA	NA	inter
LNCA_21_P0007923	2.3821282	A	0.9301254	A	2.73587591762093	0	lncRNA	ENST00000443719	NA	NA	NA	NA	XLOC_010297	NA	ENST00000443719	NA	NA	"BROAD Institute lincRNA (XLOC_010297), lincRNA [TCONS_00021528]"	chr13:21809268-21809327	hs|13q12.11	Agilent_HUMAN_G3V2	ENST00000443719	ENST00000443719	chr13	 21809268	 21809327	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29480_PI429285431	0.8854476	A	0.8949704	A	0.993421034809919	0	lncRNA	31238-1_{1..692}	n332902|AF086212|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067091|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067091|-1.0669900|-0.3193735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332902|AF086212|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067091|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067091|-1.0669900|-0.3193735	chr7	 76732844	 76733535	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47992_PI429285431	2.4452028	A	2.8959696	A	0.73165386673194	0	lncRNA	51880-1_{1..1070}	"gi|410173122|ref|XR_172128.1| PREDICTED: Homo sapiens uncharacterized LOC100288162 (LOC100288162), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173122|ref|XR_172128.1| PREDICTED: Homo sapiens uncharacterized LOC100288162 (LOC100288162), misc_RNA"	NA	NA	NA	NA	NA	XR_172128.1	NA	NA	NA	"hg19_refFlat_PKD1:range=chr16:2139728-21856905'pad=0,hg19_refFlat_PKD1:range=chr16:2139728-21856905'pad=0 3'pad=0 strand=- repeatMasking=none,-102.60"	NA	Unknown
CUST_26835_PI429285431	0.9146702	A	0.90633833	A	1.00579192088719	0	lncRNA	28349-1_{1..696}	n323906|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055820|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055820|-1.0833900|-0.3080018	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323906|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055820|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055820|-1.0833900|-0.3080018	chrX	 13883432	 13884127	+	NA	NA	NA	NA	GPM6B	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00chrX:13873432-13901944"	NA	inner
CUST_51941_PI429285431	2.7933578	A	0.93917096	A	3.61547910877754	0	lncRNA	55483-1_{1..345}	hg19_lincRNAsTranscripts_TCONS_l2_00016499 range=chr20:20830161-20835182 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016499 range=chr20:20830161-20835182 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	 20830161	 20830505	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5246_PI429285431	0.90882224	A	0.9267248	A	0.987667566518202	0	lncRNA	5187-1_{1..3000}	"transcript_id ""ENST00000561283.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561283.2"" | genecode_v17"	chr15	 77817882	 77820881	+	ENSG00000259362.2	ENST00000561283.2	RP11-307C19.1	RP11-307C19.1-001	NA	NA	NA	inter
LNCA_21_P0013617	0.8962194	A	0.91473234	A	0.987249789370731	0	lncRNA	BC090887	NA	BC090887	NA	NA	FLJ35024	uncharacterized LOC401491	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015098), lincRNA [TCONS_l2_00029894]"	chr9:2503377-2503318	hs|9p24.2	Agilent_HUMAN_G3V2	BC090887	BC090887	chr9	  2503318	  2503377	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13239_PI429285431	0.8881245	A	0.89647806	A	0.994226484607876	0	lncRNA	14867-1_{1..450}	lnc-RP11-80A15.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-80A15.1.1-3:1	chr14	 25571262	 25571711	+	lnc-RP11-80A15.1.1-3	lnc-RP11-80A15.1.1-3:1	XLOC_010773	linc-FOXG1-8	NA	NA	NA	inter
LNCA_21_P0001607	1.569674	A	0.9121168	A	1.57740946009862	0	lncRNA	TCONS_00001765	NA	NA	NA	NA	XLOC_001134	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001134), lincRNA [TCONS_00001765]"	chr1:192921501-192921442	hs|1q31.2	Agilent_HUMAN_G3V2	TCONS_00001765	TCONS_00001765	chr1	192921442	192921501	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33026_PI429285431	0.90888774	A	0.90439355	A	1.003119992203	0	lncRNA	34641-1_{1..1865}	n339712|BC047609|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2157|NULL|-0.6664460|-0.2580191	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339712|BC047609|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2157|NULL|-0.6664460|-0.2580191	chr20	 45981304	 45983168	+	NA	NA	NA	NA	ZMYND8	NA	chr20:45971304-45985474	inner
CUST_29616_PI429285431	1.969595	A	0.9023481	A	2.09543083143872	0	lncRNA	31377-1_{1..288}	n333173|AF417234|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079323|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079323|-1.1723500|-0.3589763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333173|AF417234|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079323|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079323|-1.1723500|-0.3589763	chr10	 35456443	 35456730	+	NA	NA	NA	NA	CREM	NA	chr10:35446443-35466731	inner
CUST_24405_PI429285431	1.0768617	A	0.93616295	A	1.10243893810999	0	lncRNA	25958-1_{1..487}	lnc-RP11-327F22.5.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-327F22.5.1-4:1	chr16	 51183594	 51184080	+	lnc-RP11-327F22.5.1-4	lnc-RP11-327F22.5.1-4:1	ENSG00000261238.1	AC009166.5	SALL1	NA	chr16:51173594-51185183	inner
CUST_2079_PI429285431	6.2292476	P	6.253401	P	0.983397505012496	0	lncRNA	2070-1_{1..842}	"transcript_id ""ENST00000509788.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000509788.1"" | genecode_v17"	chr5	  9546402	  9547243	+	ENSG00000250786.1	ENST00000509788.1	CTD-2001E22.2	CTD-2001E22.2-002	SEMA5A	NA	chr5:9536402-9546233	inter
LNCA_21_P0004334	0.8837435	A	0.8966648	A	0.991083626078306	0	lncRNA	TCONS_00010170	NA	NA	NA	NA	XLOC_004633	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004633), lincRNA [TCONS_00010170]"	chr5:172055667-172055726	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00010170	TCONS_00010170	chr5	172055667	172055726	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11636_PI429285431	5.862749	P	6.147027	P	0.821152453602614	0	lncRNA	13213-1_{1..589}	lnc-SHOC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SHOC2-1:1	chr10	112779635	112780223	+	lnc-SHOC2-1	lnc-SHOC2-1:1	XLOC_008613	linc-ADRA2A-2	SHOC2	NA	chr10:112769635-112773425	inter
CUST_35041_PI429285431	2.4876642	A	1.5510968	A	1.91396891628681	0	lncRNA	36452-1_{1..1721}	n341987|AK026881|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4468|NULL|-1.1474200|-0.2914805	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341987|AK026881|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4468|NULL|-1.1474200|-0.2914805	chr12	 95470526	 95472246	-	NA	NA	NA	NA	NR2C1	NA	chr12:95460526-95467404	inner
CUST_34497_PI429285431	0.8774461	A	0.8825704	A	0.996454406416702	0	lncRNA	35964-1_{1..403}	n341375|AF107458|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3844|NULL|-1.1447900|-0.3147857	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341375|AF107458|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3844|NULL|-1.1447900|-0.3147857	chr7	157001654	157002056	+	NA	NA	NA	NA	UBE3C	NA	chr7:156991654-157012044	inner
CUST_19193_PI429285431	0.87729454	A	0.88068044	A	0.997655824841363	0	lncRNA	20863-1_{1..374}	lnc-SRBD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRBD1-2:1	chr2	 45902449	 45902822	-	lnc-SRBD1-2	lnc-SRBD1-2:1	ENSG00000228481.1	U51244.2	PRKCE	NA	chr2:45892449-45912615	inner
CUST_43819_PI429285431	8.540425	P	8.986396	P	0.734090074010232	0	lncRNA	48543-1_{1..2549}	"gi|388596712|ref|NR_049784.1| Homo sapiens sorting nexin 17 (SNX17), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388596712|ref|NR_049784.1| Homo sapiens sorting nexin 17 (SNX17), transcript variant 7, non-coding RNA"	Chr2	 27593363	 27595911	+	9784	NR_049784.1	NA	NA	NA	NA	NA	inter
CUST_46983_PI429285431	0.8989335	A	1.0583513	A	0.89538633144207	0	lncRNA	51084-1_{1..574}	"gi|397139676|ref|XR_158927.1| PREDICTED: Homo sapiens uncharacterized LOC100996400 (LOC100996400), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139676|ref|XR_158927.1| PREDICTED: Homo sapiens uncharacterized LOC100996400 (LOC100996400), misc_RNA"	NA	NA	NA	NA	NA	XR_158927.1	NA	NA	NA	NA	NA	Unknown
CUST_9249_PI429285431	0.8850641	A	0.8843179	A	1.00051736021079	0	lncRNA	10758-1_{1..468}	lnc-ATOH8-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ATOH8-2:9	chr2	 86118814	 86119281	+	lnc-ATOH8-2	lnc-ATOH8-2:9	ENSG00000232504	AC105053.4	ST3GAL5	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50chr2:86108814-86116157"	NA	inter
CUST_43137_PI429285431	2.0492449	A	0.87768346	A	2.25255360673298	0	lncRNA	47951-1_{1..583}	ENST00000574698 havana:lincRNA chromosome:GRCh37:HSCHR5_1_CTG1:69122191:69122773:-1 gene:ENSG00000262957 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000574698 havana:lincRNA chromosome:GRCh37:HSCHR5_1_CTG1:69122191:69122773:-1 gene:ENSG00000262957 gene_biotype:lincRNA transcript_biotype:lincRNA	chrHSCHR5_1_CTG1	 69122191	 69122773	-	ENSG00000262957	ENST00000574698	NA	NA	NA	NA	NA	Unknown
CUST_717_PI429285431	1.4477304	A	2.6525538	A	0.433822444441161	0	lncRNA	710-1_{1..379}	"transcript_id ""ENST00000585767.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585767.1"" | genecode_v17"	chr2	  6789223	  6789601	-	ENSG00000236172.2	ENST00000585767.1	AC097517.2	AC097517.2-026	NA	NA	NA	inter
CUST_44427_PI429285431	0.8886644	A	0.89421797	A	0.996157958214133	0	lncRNA	49039-1_{1..541}	"gi|389886565|ref|NR_051987.1| Homo sapiens long intergenic non-protein coding RNA 499 (LINC00499), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|389886565|ref|NR_051987.1| Homo sapiens long intergenic non-protein coding RNA 499 (LINC00499), non-coding RNA"	Chr4	139230865	139231405	+	100874047	NR_051987.1	NA	NA	NA	NA	NA	inter
CUST_26684_PI429285431	1.3175796	A	0.91449624	A	1.32233100821128	0	lncRNA	28182-1_{1..215}	n158|AC004879|snoRNA|Homosapiens|U3|NONCODEv2.0|n158|NULL|-1.1321100|-0.7985501	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n158|AC004879|snoRNA|Homosapiens|U3|NONCODEv2.0|n158|NULL|-1.1321100|-0.7985501	chr7	 10262223	 10262437	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49695_PI429285431	1.6269116	A	1.805677	A	0.883458701078119	0	lncRNA	53472-1_{1..1960}	hg19_lincRNAsTranscripts_TCONS_l2_00025651 range=chr7:9765726-9767835 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025651 range=chr7:9765726-9767835 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  9765726	  9767685	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33221_PI429285431	0.8872558	A	0.8866417	A	1.00042575229037	0	lncRNA	34810-1_{1..628}	n339919|BC038762|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2368|NULL|-0.9506560|-0.3737814	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339919|BC038762|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2368|NULL|-0.9506560|-0.3737814	chr18	 69504274	 69504901	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18370_PI429285431	1.5997502	A	1.9467367	A	0.786224649192795	0	lncRNA	20098-1_{1..464}	lnc-OR14J1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR14J1-2:1	chr6	 29234708	 29235171	+	lnc-OR14J1-2	lnc-OR14J1-2:1	ENSG00000232505	XXbac-BPG308J9.3	NA	NA	NA	inter
CUST_30562_PI429285431	7.631795	P	7.86613	P	0.850076745664508	0	lncRNA	32343-1_{1..242}	n335759|X06817|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321217|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321217|-1.0923700|-0.0445498	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335759|X06817|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321217|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321217|-1.0923700|-0.0445498	chr19	 49588689	 49588930	+	NA	NA	NA	NA	SNRNP70	NA	chr19:49588465-49599700	inner
CUST_1075_PI429285431	0.8787652	A	0.8769711	A	1.0012443489171	0	lncRNA	1064-1_{1..2209}	"transcript_id ""ENST00000419362.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419362.1"" | genecode_v17"	chr2	132722304	132724512	-	ENSG00000235615.2	ENST00000419362.1	AJ239322.1	AJ239322.1-001	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90"	NA	inter
LNCA_21_P0003456	0.8744424	A	0.87493676	A	0.999657394462504	0	lncRNA	ENST00000513616	NA	NA	NA	NA	XLOC_003915	NA	ENST00000513616	NA	NA	"BROAD Institute lincRNA (XLOC_003915), lincRNA [TCONS_00007736]"	chr4:27264229-27264170	hs|4p15.2	Agilent_HUMAN_G3V2	ENST00000513616	ENST00000513616	chr4	 27264170	 27264229	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19464_PI429285431	0.8947169	A	0.88688475	A	1.00544359550527	0	lncRNA	21123-1_{1..339}	lnc-AC109486.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC109486.1-2:2	chr5	 59328604	 59328942	+	lnc-AC109486.1-2	lnc-AC109486.1-2:2	ENSG00000248935.1	CTD-2254N19.1	PDE4D	NA	chr5:59318604-59338847	inner
CUST_47995_PI429285431	2.5095716	A	2.3260906	A	1.13562065927254	0	lncRNA	51882-1_{1..3000}	"gi|410173144|ref|XR_172130.1| PREDICTED: Homo sapiens nuclear pore complex-interacting protein-like 3-like (LOC101060564), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173144|ref|XR_172130.1| PREDICTED: Homo sapiens nuclear pore complex-interacting protein-like 3-like (LOC101060564), misc_RNA"	NA	NA	NA	NA	NA	XR_172130.1	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80"	NA	Unknown
CUST_27079_PI429285431	0.8857808	A	0.88667387	A	0.999381162606351	0	lncRNA	28611-1_{1..957}	n324189|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000138623|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000138623|-1.1535600|-0.3876044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324189|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000138623|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000138623|-1.1535600|-0.3876044	chr7	126904172	126905128	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1512_PI429285431	0.89938724	A	1.2228423	A	0.799153718685856	0	lncRNA	1499-1_{1..444}	"transcript_id ""ENST00000470024.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000470024.1"" | genecode_v17"	chr3	155008977	155009420	+	ENSG00000242790.1	ENST00000470024.1	RP11-451G4.3	RP11-451G4.3-001	NA	NA	NA	inter
CUST_33271_PI429285431	0.88750994	A	0.90353405	A	0.988954389056112	0	lncRNA	34856-1_{1..2442}	n339978|AK094686|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2431|NULL|-1.0781300|-0.3174746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339978|AK094686|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2431|NULL|-1.0781300|-0.3174746	chr10	 16554078	 16556519	-	NA	NA	NA	NA	PTER	NA	chr10:16544078-16555736	inner
CUST_10225_PI429285431	0.8893723	A	0.8978982	A	0.99410772440303	0	lncRNA	11750-1_{1..3000}	lnc-BMP6-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BMP6-9:1	chr6	  8938777	  8941776	+	lnc-BMP6-9	lnc-BMP6-9:1	XLOC_005164	linc-GCNT2-4	NA	NA	NA	inter
CUST_43390_PI429285431	7.175766	P	7.712921	P	0.689128534047843	0	lncRNA	48203-1_{1..2642}	"gi|227116264|ref|NR_027504.1| Homo sapiens macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2 (MST1P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|227116264|ref|NR_027504.1| Homo sapiens macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2 (MST1P2), non-coding RNA"	Chr1	 16972069	 16974710	+	11209	NR_027504.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002930	5.8939223	P	5.454839	P	1.35574260397947	0	lncRNA	TCONS_00005947	NA	NA	NA	NA	XLOC_002577	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002577), lincRNA [TCONS_00005947]"	chr3:12517950-12518009	hs|3p25.2	Agilent_HUMAN_G3V2	TCONS_00005947	TCONS_00005947	chr3	 12517950	 12518009	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010415	9.916467	P	9.272026	P	1.56313350270016	0	lncRNA	TCONS_00029589	NA	NA	NA	NA	XLOC_014226	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014226), lincRNA [TCONS_00029589]"	chr22:36784634-36784693	hs|22q12.3	Agilent_HUMAN_G3V2	TCONS_00029589	TCONS_00029589	chr22	 36784634	 36784693	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002696	6.343236	P	4.230923	P	4.32383958531344	0	lncRNA	TCONS_00005379	NA	NA	NA	NA	XLOC_002560	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002560), lincRNA [TCONS_00005379]"	chr2:243000190-243000131	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_00005379	TCONS_00005379	chr2	243000131	243000190	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31936_PI429285431	5.1207905	P	4.68933	P	1.34859812784732	0	lncRNA	33664-1_{1..343}	n338492|AL110173|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|889|NULL|-1.0657400|-0.2351923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338492|AL110173|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|889|NULL|-1.0657400|-0.2351923	chr19	 30416451	 30416793	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_26485_PI429285431	1.5431339	A	2.3428483	A	0.574462888544751	0	lncRNA	27994-1_{1..509}	lnc-SAP30-5:29	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:29	chr4	174455064	174455572	+	lnc-SAP30-5	lnc-SAP30-5:29	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174447652-174451378	inter
CUST_19282_PI429285431	2.589811	A	2.5898972	A	0.999940252497989	0	lncRNA	20950-1_{1..389}	lnc-CHST15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CHST15-1:1	chr10	125691039	125691427	-	lnc-CHST15-1	lnc-CHST15-1:1	ENSG00000234677.1	RP11-285A18.2	NA	NA	NA	inter
CUST_4024_PI429285431	2.7146294	A	0.9215762	A	3.4654752141329	0	lncRNA	3985-1_{1..1897}	"transcript_id ""ENST00000526091.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526091.1"" | genecode_v17"	chr11	 78804344	 78806240	+	ENSG00000255345.1	ENST00000526091.1	CTD-2337I7.1	CTD-2337I7.1-001	ODZ4	NA	chr11:78794344-78818899	inner
CUST_7000_PI429285431	1.8465343	A	1.1097136	A	1.6664992867674	0	lncRNA	6948-1_{1..805}	"transcript_id ""ENST00000451118.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451118.1"" | genecode_v17"	chr22	 46271879	 46272683	-	ENSG00000235091.1	ENST00000451118.1	WI2-85898F10.1	WI2-85898F10.1-001	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60"	NA	inter
CUST_47617_PI429285431	1.2107548	A	0.8984799	A	1.24166406330567	0	lncRNA	51611-2_{3001..6000}	"gi|371940889|ref|NR_045864.1| Homo sapiens armadillo repeat containing, X-linked 4 (ARMCX4), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|371940889|ref|NR_045864.1| Homo sapiens armadillo repeat containing, X-linked 4 (ARMCX4), transcript variant 3, non-coding RNA"	NW_004070883.1	   169929	   172928	+	100131755	NR_045864.1	NA	NA	NA	NA	NA	Unknown
CUST_15893_PI429285431	0.9101777	A	0.93041015	A	0.98607381344705	0	lncRNA	17585-1_{1..409}	lnc-FNDC1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FNDC1-5:2	chr6	159888738	159889146	+	lnc-FNDC1-5	lnc-FNDC1-5:2	XLOC_005524	linc-WTAP-2	NA	NA	NA	inter
LNCA_21_P0008142	1.5309595	A	0.9233044	A	1.52378050197781	0	lncRNA	TCONS_00021967	NA	NA	NA	NA	XLOC_010568	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010568), lincRNA [TCONS_00021967]"	chr13:36735874-36731160	hs|13q13.3	Agilent_HUMAN_G3V2	TCONS_00021967	TCONS_00021967	chr13	 36731160	 36735874	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14133_PI429285431	0.9115047	A	3.3056004	P	0.190241552667974	0	lncRNA	15783-1_{1..237}	lnc-GLI2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLI2-1:1	chr2	121491618	121491854	+	lnc-GLI2-1	lnc-GLI2-1:1	XLOC_001643	linc-GLI2-1	NA	NA	NA	inter
LNCA_21_P0008403	8.064229	P	7.677609	P	1.30732695858504	0	lncRNA	TCONS_00022652	NA	NA	NA	NA	XLOC_010952	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010952), lincRNA [TCONS_00022652]"	chr14:105564917-105564976	hs|14q32.33	Agilent_HUMAN_G3V2	TCONS_00022652	TCONS_00022652	chr14	105564917	105564976	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34232_PI429285431	4.5783696	P	4.2860904	P	1.22457335710187	0	lncRNA	35741-2_{3001..4240}	n341091|AY010115|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3557|NULL|-1.2876700|-0.3616712	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341091|AY010115|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3557|NULL|-1.2876700|-0.3616712	chr11	 89929781	 89931020	+	NA	NA	NA	NA	NAALAD2	NA	chr11:89916781-89925779	inter
CUST_41294_PI429285431	4.6365757	P	4.1828303	P	1.36959125964705	0	lncRNA	42287-1_{1..84}	ENST00000385051 ncrna:miRNA chromosome:GRCh37:X:49773039:49773122:1 gene:ENSG00000207785 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385051 ncrna:miRNA chromosome:GRCh37:X:49773039:49773122:1 gene:ENSG00000207785 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 49773039	 49773122	+	ENSG00000207785	ENST00000385051	NA	NA	CLCN5	NA	chrX:49763039-49783122	inner
CUST_2351_PI429285431	0.9085157	A	1.4718852	A	0.676719797287141	0	lncRNA	2343-1_{1..451}	"transcript_id ""ENST00000512965.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512965.1"" | genecode_v17"	chr5	124443897	124444347	+	ENSG00000249365.1	ENST00000512965.1	RP11-508M8.1	RP11-508M8.1-001	NA	NA	NA	inter
CUST_18000_PI429285431	5.546978	P	5.1594024	P	1.30819318148164	0	lncRNA	19734-1_{1..682}	lnc-AC102948.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC102948.1.1-2:1	chr17	 50976691	 50977372	+	lnc-AC102948.1.1-2	lnc-AC102948.1.1-2:1	XLOC_012252	linc-KIF2B-2	NA	NA	NA	inter
CUST_30864_PI429285431	0.8964591	A	1.3689392	A	0.720724553129304	0	lncRNA	32652-1_{1..317}	n336861|AY566847|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331939_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331939_07|-1.3672300|-0.4070836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336861|AY566847|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331939_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331939_07|-1.3672300|-0.4070836	chr6	   928312	   928628	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15192_PI429285431	0.89050794	A	0.899835	A	0.993555827971156	0	lncRNA	16860-1_{1..1119}	lnc-VAV3-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VAV3-1:5	chr1	106595109	106596227	-	lnc-VAV3-1	lnc-VAV3-1:5	XLOC_000950	linc-AMY1A-4	NA	NA	NA	inter
CUST_14744_PI429285431	0.8990148	A	0.9006519	A	0.998865892337444	0	lncRNA	16408-1_{1..274}	lnc-PPHLN1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPHLN1-3:1	chr12	 43101580	 43101853	+	lnc-PPHLN1-3	lnc-PPHLN1-3:1	XLOC_009715	linc-IRAK4-2	NA	NA	NA	inter
CUST_37580_PI429285431	6.7300596	P	6.599266	P	1.09489581768493	0	lncRNA	38682-1_{1..446}	n346056|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1606|NULL|-1.2822700|-0.2127009	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346056|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1606|NULL|-1.2822700|-0.2127009	chr3	 18486888	 18487333	+	NA	NA	NA	NA	LOC100652784	NA	chr3:18486105-18505831	inter
CUST_40651_PI429285431	5.0436735	P	3.2361085	P	3.50050968937543	0	lncRNA	41390-1_{1..306}	n410194|NR_036751|lncRNA|Homosapiens||RefGeneNoncode|NR_036751||2.6429600|-0.1785607	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410194|NR_036751|lncRNA|Homosapiens||RefGeneNoncode|NR_036751||2.6429600|-0.1785607	chr4	171502620	171502925	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29736_PI429285431	0.9260638	A	1.056497	A	0.91355709401101	0	lncRNA	31498-1_{1..444}	n333410|BC010185|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087455|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087455|-0.8993360|-0.0953132	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333410|BC010185|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087455|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087455|-0.8993360|-0.0953132	chr11	  2016359	  2016802	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1129_PI429285431	2.8679423	A	1.2794282	A	3.0073944410928	0	lncRNA	1118-1_{1..1832}	"transcript_id ""ENST00000295052.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000295052.3"" | genecode_v17"	chr2	150624020	150625851	-	ENSG00000162947.4	ENST00000295052.3	AC007364.1	AC007364.1-001	NA	NA	NA	inter
CUST_19069_PI429285431	1.0046365	A	1.5963538	A	0.663552582485446	0	lncRNA	20760-1_{1..573}	lnc-TMEM86A-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM86A-2:4	chr11	 18623021	 18623593	+	lnc-TMEM86A-2	lnc-TMEM86A-2:4	ENSG00000247595	RP11-504G3.1	SPTY2D1	NA	chr11:18627948-18633311	inter
CUST_6772_PI429285431	0.8973037	A	2.5180912	A	0.325157926848868	0	lncRNA	6719-1_{1..565}	"transcript_id ""ENST00000602339.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602339.1"" | genecode_v17"	chr21	 17702925	 17703489	+	ENSG00000215386.6	ENST00000602339.1	LINC00478	LINC00478-014	NA	NA	NA	inter
LNCA_21_P0012914	0.87793356	A	0.8864977	A	0.994081374984406	0	lncRNA	TCONS_l2_00022964	NA	NA	NA	NA	XLOC_l2_012107	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012107), lincRNA [TCONS_l2_00022964]"	chr5:75158583-75158524	hs|5q13.3	Agilent_HUMAN_G3V2	TCONS_l2_00022964	TCONS_l2_00022964	chr5	 75158524	 75158583	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10935_PI429285431	5.796857	P	5.093859	P	1.62788411341274	0	lncRNA	12476-1_{1..1733}	lnc-CLDN24-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLDN24-1:1	chr4	184253692	184255424	-	lnc-CLDN24-1	lnc-CLDN24-1:1	XLOC_004197	linc-CLDN24-3	NA	NA	NA	inter
CUST_26195_PI429285431	3.3264363	P	4.003804	P	0.625305148085771	0	lncRNA	27706-1_{1..664}	lnc-PAXIP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAXIP1-1:1	chr7	154657020	154657683	-	lnc-PAXIP1-1	lnc-PAXIP1-1:1	ENSG00000236408.1	RP11-476H24.1	DPP6	NA	chr7:154647020-154667193	inner
CUST_9436_PI429285431	0.879024	A	0.8823724	A	0.997681757265473	0	lncRNA	10942-1_{1..545}	lnc-KCNG3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNG3-1:2	chr2	 42651961	 42652505	-	lnc-KCNG3-1	lnc-KCNG3-1:2	XLOC_002063	linc-COX7A2L-2	NA	NA	NA	inter
CUST_24849_PI429285431	1.2445357	A	2.1778557	A	0.523651900959133	0	lncRNA	26389-1_{1..531}	lnc-PPP6R2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP6R2-1:1	chr22	 50754354	 50754884	+	lnc-PPP6R2-1	lnc-PPP6R2-1:1	ENSG00000227484.1	XX-C283C717.1	PLXNB2	"hg19_refFlat_DENND6B:range=chr22:50750568-507654175'pad=0,hg19_refFlat_DENND6B:range=chr22:50750568-507654175'pad=0 3'pad=0 strand=- repeatMasking=none,-101.70chr22:50744354-50746001"	NA	inner
CUST_21674_PI429285431	0.90006423	A	0.9108255	A	0.992568606413684	0	lncRNA	23284-1_{1..1942}	lnc-LTBP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-LTBP3-1:1	chr11	 65335953	 65337894	-	lnc-LTBP3-1	lnc-LTBP3-1:1	ENSG00000260233.1	RP11-856B14.1	EHBP1L1	"hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70chr11:65343509-65347894"	NA	inter
LNCA_21_P0007957	0.87892115	A	1.1431904	A	0.832620364541908	0	lncRNA	ENST00000446579	NA	NA	NA	NA	XLOC_010467	NA	ENST00000446579	NA	NA	"BROAD Institute lincRNA (XLOC_010467), lincRNA [TCONS_00021585]"	chr13:89932432-89932491	hs|13q31.2	Agilent_HUMAN_G3V2	ENST00000446579	ENST00000446579	chr13	 89932432	 89932491	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26809_PI429285431	0.9010729	A	1.3322504	A	0.741656212654992	0	lncRNA	28321-1_{1..477}	n323877|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056411|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056411|-0.9207430|-0.3958487	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323877|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056411|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056411|-0.9207430|-0.3958487	chrX	 47042194	 47042670	+	NA	NA	NA	NA	UBA1	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-28.57;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20chrX:47050199-47053064"	NA	inner
CUST_16996_PI429285431	1.8525691	A	1.8866383	A	0.976661681494569	0	lncRNA	18706-1_{1..1281}	lnc-C15orf2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-5:1	chr15	 24642214	 24643494	+	lnc-C15orf2-5	lnc-C15orf2-5:1	XLOC_011179	linc-C15orf2-3	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
LNCA_21_P0006254	0.87419534	A	0.8746673	A	0.99967291576038	0	lncRNA	TCONS_00016270	NA	NA	NA	NA	XLOC_007647	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007647), lincRNA [TCONS_00016270]"	chr9:11829253-11822678	hs|9p23	Agilent_HUMAN_G3V2	TCONS_00016270	TCONS_00016270	chr9	 11822678	 11829253	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25284_PI429285431	8.207652	P	8.104972	P	1.07376627622296	0	lncRNA	26815-1_{1..441}	lnc-CTR9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTR9-1:2	chr11	 10823002	 10823442	+	lnc-CTR9-1	lnc-CTR9-1:2	ENSG00000255125.1	RP11-685M7.5	EIF4G2	NA	chr11:10818593-10830582	inner
CUST_50271_PI429285431	2.835832	A	2.3424582	A	1.4077330694861	0	lncRNA	53994-1_{1..853}	hg19_lincRNAsTranscripts_TCONS_l2_00028815 range=chr9:69475978-69477295 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028815 range=chr9:69475978-69477295 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69475978	 69476830	+	NA	NA	NA	NA	LOC100132154	NA	chr9:69465978-69487295	inter
CUST_13117_PI429285431	0.8881353	A	0.88189	A	1.00433829536158	0	lncRNA	14742-1_{1..558}	lnc-RASGRP3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RASGRP3-5:1	chr2	 35042159	 35042716	+	lnc-RASGRP3-5	lnc-RASGRP3-5:1	XLOC_001426	linc-CRIM1-2	NA	NA	NA	inter
CUST_11774_PI429285431	1.1423689	A	0.8824857	A	1.19738176115745	0	lncRNA	13352-1_{1..370}	lnc-KCNG3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNG3-1:4	chr2	 42651961	 42652330	-	lnc-KCNG3-1	lnc-KCNG3-1:4	XLOC_002063	linc-COX7A2L-2	NA	NA	NA	inter
CUST_27074_PI429285431	0.9052571	A	0.9131832	A	0.994521110296814	0	lncRNA	28606-1_{1..2624}	n324183|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280517|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280517|0.1313720|-0.1845984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324183|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280517|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280517|0.1313720|-0.1845984	chr7	152739251	152741874	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60"	NA	inter
CUST_22908_PI429285431	4.625991	P	4.6643014	P	0.973794731257096	0	lncRNA	24484-1_{1..764}	lnc-NDUFS8-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFS8-1:3	chr11	 67795519	 67796282	+	lnc-NDUFS8-1	lnc-NDUFS8-1:3	ENSG00000006534.11	ALDH3B1	ALDH3B1	NA	chr11:67785519-67796743	inner
CUST_31191_PI429285431	1.3951857	A	1.1477082	A	1.18712964617422	0	lncRNA	32985-1_{1..956}	n337631|AL079309|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|10|NULL|-0.9741070|-0.3374082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337631|AL079309|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|10|NULL|-0.9741070|-0.3374082	chrX	 13111778	 13112733	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14242_PI429285431	1.6802216	A	2.515234	A	0.560578220809704	0	lncRNA	15900-1_{1..668}	lnc-EGFL6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EGFL6-2:1	chrX	 13353601	 13354268	+	lnc-EGFL6-2	lnc-EGFL6-2:1	XLOC_007930	linc-EGFL6-1	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10"	NA	inter
CUST_28283_PI429285431	0.9081365	A	0.9180912	A	0.993123678601227	0	lncRNA	29919-1_{1..485}	n325578|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129954|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129954|-0.8233760|-0.4151431	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325578|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129954|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129954|-0.8233760|-0.4151431	chr17	 13143225	 13143709	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45345_PI429285431	3.5803685	P	4.20888	P	0.64684345161077	0	lncRNA	49783-1_{1..3000}	"gi|154816179|ref|NR_003670.1| Homo sapiens keratinocyte growth factor-like protein 2 (KGFLP2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|154816179|ref|NR_003670.1| Homo sapiens keratinocyte growth factor-like protein 2 (KGFLP2), non-coding RNA"	Chr9	 41958802	 41961801	-	654466	NR_003670.1	NA	NA	NA	NA	NA	inter
CUST_16138_PI429285431	0.8786827	A	0.878041	A	1.00044489148064	0	lncRNA	17844-1_{1..434}	lnc-LMO2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LMO2-2:1	chr11	 33976106	 33976539	-	lnc-LMO2-2	lnc-LMO2-2:1	XLOC_009412	linc-LMO2-1	NA	NA	NA	inter
LNCA_21_P0014145	0.868753	A	1.5648006	A	0.617260937323302	0	lncRNA	ENST00000511327	XR_108585	XR_108585	NA	Hs.665172	LOC100505750	NA	ENST00000511327	THC2613516	NA	"PREDICTED: Homo sapiens hypothetical LOC100505750 (LOC100505750), miscRNA [XR_108585]"	chr5:75902536-75902477	hs|5q13.3	Agilent_HUMAN_G3V2	ENST00000511327	ENST00000511327	chr5	 75902477	 75902536	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50717_PI429285431	3.595203	P	3.2172024	P	1.29953960291865	0	lncRNA	54386-1_{1..299}	hg19_lincRNAsTranscripts_TCONS_l2_00003698 range=chr10:89149965-89154374 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003698 range=chr10:89149965-89154374 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 89149965	 89150263	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44905_PI429285431	3.2157357	P	1.8223827	A	2.62688492093097	0	lncRNA	49423-2_{3001..4934}	"gi|381342474|ref|NR_046479.1| Homo sapiens FK506 binding protein 14, 22 kDa (FKBP14), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|381342474|ref|NR_046479.1| Homo sapiens FK506 binding protein 14, 22 kDa (FKBP14), transcript variant 3, non-coding RNA"	Chr7	 30053199	 30055132	-	55033	NR_046479.1	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0,hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.81;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30"	NA	inter
LNCA_21_P0013161	6.2311754	P	5.693094	P	1.45204020486721	0	lncRNA	THC2506834	NA	NA	NA	NA	XLOC_l2_013153	NA	NA	THC2506834	NA	"BROAD Institute lincRNA (XLOC_l2_013153), lincRNA [TCONS_l2_00025505]"	chr6:147171356-147171297	hs|6q24.3	Agilent_HUMAN_G3V2	THC2506834	THC2506834	chr6	147171297	147171356	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1398_PI429285431	7.2675724	P	6.164353	P	2.1483356297439	0	lncRNA	1387-1_{1..705}	"transcript_id ""ENST00000479244.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000479244.1"" | genecode_v17"	chr3	 86313705	 86314409	-	ENSG00000239767.1	ENST00000479244.1	RP11-789F5.1	RP11-789F5.1-001	NA	NA	NA	inter
CUST_4751_PI429285431	1.3803442	A	1.9113111	A	0.692090736600172	0	lncRNA	4695-1_{1..568}	"transcript_id ""ENST00000552303.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552303.1"" | genecode_v17"	chr14	 27312658	 27313225	+	ENSG00000258081.3	ENST00000552303.1	RP11-384J4.2	RP11-384J4.2-002	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30"	NA	inter
LNCA_21_P0014722	3.0892816	P	0.9309627	A	4.46394391110853	0	lncRNA	ENST00000512507	XR_112759	XR_112759	NA	Hs.420272	H2AFY	"H2A histone family, member Y"	ENST00000512507	THC2491252	GO:0001740|GO:0000793|GO:0003682|GO:0006334|GO:0005634|GO:0007549|GO:0000786|GO:0003677|GO:0016568	"PREDICTED: Homo sapiens hypothetical LOC100506200 (LOC100506200), miscRNA [XR_112759]"	chr5:134689302-134689243	hs|5q31.1	Agilent_HUMAN_G3V2	ENST00000512507	ENST00000512507	chr5	134689243	134689302	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41402_PI429285431	2.2917318	A	2.3318267	A	0.972590968597591	0	lncRNA	42517-1_{1..60}	ENST00000578459 ncrna:miRNA chromosome:GRCh37:11:65403781:65403840:1 gene:ENSG00000266041 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578459 ncrna:miRNA chromosome:GRCh37:11:65403781:65403840:1 gene:ENSG00000266041 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 65403781	 65403840	+	ENSG00000266041	ENST00000578459	NA	NA	PCNXL3	NA	chr11:65393781-65404910	inner
LNCA_21_P0006121	0.905057	A	0.9277032	A	0.984425408464501	0	lncRNA	TCONS_00015908	NA	NA	NA	NA	XLOC_007266	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007266), lincRNA [TCONS_00015908]"	chr9:2429927-2429986	hs|9p24.2	Agilent_HUMAN_G3V2	TCONS_00015908	TCONS_00015908	chr9	  2429927	  2429986	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001255	5.0833874	P	4.322229	P	1.69485094501183	0	lncRNA	TCONS_00000807	NA	NA	NA	NA	XLOC_000022	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000022), lincRNA [TCONS_00000807]"	chr1:2486143-2486202	hs|1p36.32	Agilent_HUMAN_G3V2	TCONS_00000807	TCONS_00000807	chr1	  2486143	  2486202	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3482_PI429285431	8.236861	P	8.184063	P	1.03727469162391	0	lncRNA	3453-1_{1..834}	"transcript_id ""ENST00000588550.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588550.1"" | genecode_v17"	chr9	 93924780	 93925613	+	ENSG00000235641.2	ENST00000588550.1	LINC00484	LINC00484-002	NA	NA	NA	inter
CUST_4750_PI429285431	0.98996824	A	1.396355	A	0.754510686710574	0	lncRNA	4694-1_{1..477}	"transcript_id ""ENST00000550024.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550024.1"" | genecode_v17"	chr14	 27305934	 27306410	+	ENSG00000258081.3	ENST00000550024.1	RP11-384J4.2	RP11-384J4.2-001	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10"	NA	inter
CUST_36274_PI429285431	0.9022282	A	0.9301751	A	0.980815103317978	0	lncRNA	37510-1_{1..1086}	n344804|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_353|NULL|-1.3387900|-0.3335990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344804|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_353|NULL|-1.3387900|-0.3335990	chr11	 28724085	 28725170	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4374_PI429285431	4.6470027	P	4.470763	P	1.12993493470313	0	lncRNA	4328-1_{1..247}	"transcript_id ""ENST00000550035.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550035.1"" | genecode_v17"	chr12	 92073908	 92074154	+	ENSG00000258125.1	ENST00000550035.1	RP11-1041F24.1	RP11-1041F24.1-001	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20"	NA	inter
CUST_11359_PI429285431	1.7197909	A	1.0933566	A	1.54374482452025	0	lncRNA	12924-1_{1..3000}	lnc-BTG2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTG2-2:1	chr1	203367603	203370602	+	lnc-BTG2-2	lnc-BTG2-2:1	XLOC_000529	linc-PRELP	NA	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-17.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	inter
CUST_19661_PI429285431	0.8984804	A	0.9012367	A	0.998091302310856	0	lncRNA	21317-1_{1..433}	lnc-RAB30-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAB30-1:1	chr11	 82749786	 82750218	-	lnc-RAB30-1	lnc-RAB30-1:1	ENSG00000254698.1	RP11-659G9.3	RAB30	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.30;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10chr11:82739786-82760157"	NA	inner
CUST_8972_PI429285431	6.983148	P	7.202159	P	0.859154204198754	0	lncRNA	10504-1_{1..2666}	lnc-CPN2-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPN2-4:3	chr3	193787105	193789770	-	lnc-CPN2-4	lnc-CPN2-4:3	ENSG00000230102	RP11-407B7.1	NA	NA	NA	inter
LNCA_21_P0001257	0.8791492	A	0.8889675	A	0.993217578191766	0	lncRNA	TCONS_00000823	NA	NA	NA	NA	XLOC_000032	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000032), lincRNA [TCONS_00000823]"	chr1:4194086-4194145	hs|1p36.32	Agilent_HUMAN_G3V2	TCONS_00000823	TCONS_00000823	chr1	  4194086	  4194145	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44279_PI429285431	4.9636188	P	5.818173	P	0.55303619121528	0	lncRNA	48915-2_{3001..3354}	"gi|335892855|ref|NR_038387.1| Homo sapiens uncharacterized LOC730091 (LOC730091), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|335892855|ref|NR_038387.1| Homo sapiens uncharacterized LOC730091 (LOC730091), non-coding RNA"	Chr3	156468132	156468485	-	730091	NR_038387.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30"	NA	inter
CUST_20152_PI429285431	3.3924868	P	3.7084575	A	0.803310311191092	0	lncRNA	21797-1_{1..366}	lnc-RAI2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAI2-1:1	chrX	 17575319	 17575684	-	lnc-RAI2-1	lnc-RAI2-1:1	ENSG00000230020.1	NHS-AS1	NHS	NA	chrX:17565319-17585508	inner
CUST_48892_PI429285431	7.7584014	P	7.1316423	P	1.54409241340849	0	lncRNA	52731-1_{1..1891}	hg19_lincRNAsTranscripts_TCONS_l2_00019381 range=chr3:94224395-94226462 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019381 range=chr3:94224395-94226462 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 94224395	 94226285	-	NA	NA	NA	NA	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.01;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
LNCA_21_P0008021	0.87424153	A	0.8784677	A	0.997074928562081	0	lncRNA	BC034786	NA	BC034786	NA	Hs.382313	XLOC_010732	NA	NA	THC2604608	NA	"BROAD Institute lincRNA (XLOC_010732), lincRNA [TCONS_00021698]"	chr13:112911405-112911346	hs|13q34	Agilent_HUMAN_G3V2	BC034786	BC034786	chr13	112911346	112911405	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27040_PI429285431	0.8757184	A	0.8807528	A	0.996516501343028	0	lncRNA	28571-1_{1..312}	n324146|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051772|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051772|-0.9647160|-0.3513385	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324146|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051772|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051772|-0.9647160|-0.3513385	chr9	 16111130	 16111441	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24582_PI429285431	5.0329304	P	5.2267613	P	0.874281089930369	0	lncRNA	26131-1_{1..633}	lnc-CCNB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CCNB2-1:1	chr15	 59425349	 59425981	+	lnc-CCNB2-1	lnc-CCNB2-1:1	ENSG00000259732.1	RP11-59H7.3	MYO1E	NA	chr15:59428563-59435449	inter
CUST_31534_PI429285431	0.89918625	A	1.3163517	A	0.748894578157592	0	lncRNA	33293-1_{1..1683}	n338022|AK026847|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|409|NULL|-0.5609530|-0.3809215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338022|AK026847|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|409|NULL|-0.5609530|-0.3809215	chr1	 82458559	 82460241	+	NA	NA	NA	NA	LPHN2	NA	chr1:82448559-82458107	inter
LNCA_21_P0014839	4.0160155	P	3.0835671	P	1.90851218824377	0	lncRNA	ENST00000487811	XR_132704	XR_132704	NA	NA	STAMBP	STAM binding protein	ENST00000487811	THC2545003	GO:0005515|GO:0008284|GO:0005886|GO:0005730|GO:0005634|GO:0006916|GO:0007259|GO:0046872|GO:0005737|GO:0006508|GO:0008233|GO:0005769|GO:0008237	"PREDICTED: Homo sapiens hypothetical LOC100652991 (LOC100652991), miscRNA [XR_132704]"	chr2:74100714-74100773	hs|2p13.1	Agilent_HUMAN_G3V2	ENST00000487811	ENST00000487811	chr2	 74100714	 74100773	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21481_PI429285431	0.921951	A	0.8816066	A	1.02835928717162	0	lncRNA	23099-1_{1..357}	lnc-H2AFJ-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-H2AFJ-1:1	chr12	 14997429	 14997785	+	lnc-H2AFJ-1	lnc-H2AFJ-1:1	ENSG00000256339.1	RP11-233G1.4	ART4	"hg19_refFlat_ART4:range=chr12:14982305-149960475'pad=0,hg19_refFlat_ART4:range=chr12:14982305-149960475'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30chr12:14987429-14996413"	NA	inter
CUST_37622_PI429285431	3.328597	P	3.5863247	P	0.836404251281836	0	lncRNA	38719-1_{1..918}	n346100|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1650|NULL|-1.2823400|-0.2328927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346100|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1650|NULL|-1.2823400|-0.2328927	chr1	 31917031	 31917948	+	NA	NA	NA	NA	SERINC2	NA	chr1:31907031-31907527	inter
CUST_7416_PI429285431	0.89583004	A	0.9007556	A	0.996591683515486	0	lncRNA	9059-1_{1..1891}	lnc-LRBA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRBA-1:1	chr4	152045835	152047725	-	lnc-LRBA-1	lnc-LRBA-1:1	ENSG00000248759	ENST00000504680	SH3D19	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-26.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-15.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60chr4:152041433-152056413"	NA	inner
CUST_23482_PI429285431	3.0240514	P	2.237031	A	1.72550708793242	0	lncRNA	25049-1_{1..589}	lnc-FRMD5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FRMD5-1:1	chr15	 44581077	 44581665	-	lnc-FRMD5-1	lnc-FRMD5-1:1	ENSG00000259653.1	RP11-616K22.3	CASC4	"hg19_refFlat_CASC4:range=chr15:44581228-447056045'pad=0,hg19_refFlat_CASC4:range=chr15:44581228-447056045'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.80chr15:44580909-44591547"	NA	inner
CUST_11356_PI429285431	0.8884472	A	0.88786966	A	1.00040040036149	0	lncRNA	12921-1_{1..482}	lnc-SH2D4A-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SH2D4A-2:4	chr8	 19000096	 19000577	+	lnc-SH2D4A-2	lnc-SH2D4A-2:4	XLOC_006730	linc-SH2D4A-2	NA	NA	NA	inter
LNCA_21_P0008897	0.8755673	A	0.876212	A	0.999553227845108	0	lncRNA	BC104446	NA	BC104446	NA	NA	LOC283867	uncharacterized LOC283867	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011977), lincRNA [TCONS_00024303]"	chr16:65404988-65397702	hs|16q21	Agilent_HUMAN_G3V2	BC104446	BC104446	chr16	 65397702	 65404988	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002889	7.278523	P	7.5338793	P	0.837780203929717	0	lncRNA	ENST00000482382	NA	NA	NA	NA	XLOC_003289	NA	ENST00000482382	NA	NA	"BROAD Institute lincRNA (XLOC_003289), lincRNA [TCONS_00005849]"	chr3:151836381-151836322	hs|3q25.1	Agilent_HUMAN_G3V2	ENST00000482382	ENST00000482382	chr3	151836322	151836381	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39104_PI429285431	3.116169	P	3.1025705	P	1.00947032433034	0	lncRNA	40080-1_{1..918}	n385656|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azy.1||-1.0188600|-0.1834552	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385656|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azy.1||-1.0188600|-0.1834552	chr9	102128680	102129597	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42295_PI429285431	1.5282569	A	1.783935	A	0.8375933539048	0	lncRNA	44910-1_{1..124}	ENST00000516440 ncrna:snoRNA chromosome:GRCh37:6:94588824:94588947:1 gene:ENSG00000252249 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516440 ncrna:snoRNA chromosome:GRCh37:6:94588824:94588947:1 gene:ENSG00000252249 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	 94588824	 94588947	+	ENSG00000252249	ENST00000516440	NA	NA	NA	NA	NA	inter
LNCA_21_P0007811	4.964628	P	5.1920104	P	0.854183301497808	0	lncRNA	TCONS_00021009	NA	NA	NA	NA	XLOC_010271	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010271), lincRNA [TCONS_00021009]"	chr12:132302208-132302149	hs|12q24.33	Agilent_HUMAN_G3V2	TCONS_00021009	TCONS_00021009	chr12	132302149	132302208	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15951_PI429285431	9.662173	P	9.815922	P	0.898911505579125	0	lncRNA	17648-1_{1..1068}	lnc-MUC2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MUC2-1:2	chr11	  1054239	  1055306	+	lnc-MUC2-1	lnc-MUC2-1:2	XLOC_009021	linc-MUC2-1	NA	NA	NA	inter
LNCA_21_P0014639	0.8750481	A	1.9483125	A	0.47524244584639	0	lncRNA	XR_110863	XR_110863	XR_110863	NA	NA	LOC100507071	uncharacterized LOC100507071	ENST00000523556	THC2534248	NA	"PREDICTED: Homo sapiens hypothetical LOC100507071 (LOC100507071), miscRNA [XR_110863]"	chr8:22132529-22112398	hs|8p21.3	Agilent_HUMAN_G3V2	XR_110863	XR_110863	chr8	 22112398	 22132529	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9243_PI429285431	2.0364962	A	1.8978801	A	1.10084862417853	0	lncRNA	10753-1_{1..1500}	lnc-OPA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OPA3-1:1	chr19	 46148531	 46150030	-	lnc-OPA3-1	lnc-OPA3-1:1	ENSG00000248042	ENST00000448055	EML2	"hg19_refFlat_LOC100287177:range=chr19:46145308-461457745'pad=0,hg19_refFlat_LOC100287177:range=chr19:46145308-461457745'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.20chr19:46138531-46148775"	NA	inner
LNCA_21_P0014895	0.8742429	A	1.964017	A	0.469834936517262	0	lncRNA	XR_132879	XR_132879	XR_132879	NA	NA	LOC100652793	uncharacterized LOC100652793	NA	THC2602929	NA	"PREDICTED: Homo sapiens hypothetical LOC100652793 (LOC100652793), miscRNA [XR_132879]"	chr1:211827894-211827953	hs|1q32.3	Agilent_HUMAN_G3V2	XR_132879	XR_132879	chr1	211827894	211827953	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33775_PI429285431	2.060403	A	3.0464103	A	0.504873094146939	0	lncRNA	35328-1_{1..1198}	n340560|BC033051|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3022|NULL|-1.1082600|-0.2012035	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340560|BC033051|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3022|NULL|-1.1082600|-0.2012035	chr17	 19911107	 19912304	-	NA	NA	NA	NA	NA	NA	NA	inner
CUST_13327_PI429285431	6.802351	P	7.171336	P	0.774327078650838	0	lncRNA	14963-1_{1..544}	lnc-SLC39A11-1:28	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC39A11-1:28	chr17	 70335643	 70336186	-	lnc-SLC39A11-1	lnc-SLC39A11-1:28	XLOC_012567	linc-ABCA5-5	NA	NA	NA	inter
CUST_47673_PI429285431	0.8998235	A	1.4037504	A	0.705184710382606	0	lncRNA	51655-1_{1..3000}	"gi|254039635|ref|NR_028062.1| Homo sapiens protein kinase, Y-linked, pseudogene (PRKY), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|254039635|ref|NR_028062.1| Homo sapiens protein kinase, Y-linked, pseudogene (PRKY), non-coding RNA"	ChrY	  7142013	  7145012	+	5616	NR_028062.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50"	NA	inter
CUST_21715_PI429285431	3.315422	P	0.90888625	A	5.30199661818601	0	lncRNA	23325-1_{1..764}	lnc-CCRN4L-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCRN4L-4:4	chr4	139089871	139090634	+	lnc-CCRN4L-4	lnc-CCRN4L-4:4	ENSG00000250033.1	SLC7A11-AS1	SLC7A11	NA	chr4:139085248-139100561	inter
CUST_48814_PI429285431	4.2136755	P	4.557863	P	0.787751499196635	0	lncRNA	52652-1_{1..344}	hg19_lincRNAsTranscripts_TCONS_l2_00014340 range=chr2:242908157-242913997 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014340 range=chr2:242908157-242913997 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	242908157	242908500	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18008_PI429285431	5.464666	P	5.485429	P	0.985711252224771	0	lncRNA	19741-1_{1..683}	lnc-AC008060.7.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC008060.7.1-3:1	chr7	155211091	155211773	+	lnc-AC008060.7.1-3	lnc-AC008060.7.1-3:1	XLOC_006306	linc-EN2-1	NA	NA	NA	inter
CUST_46638_PI429285431	3.50117	P	2.248981	A	2.38202573513617	0	lncRNA	50813-1_{1..609}	"gi|300244574|ref|NR_034018.1| Homo sapiens uncharacterized LOC100130700 (LOC100130700), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300244574|ref|NR_034018.1| Homo sapiens uncharacterized LOC100130700 (LOC100130700), non-coding RNA"	Chr16	 34739458	 34740066	-	100130700	NR_034018.1	NA	NA	NA	NA	NA	inter
CUST_38208_PI429285431	1.6435516	A	2.2009792	A	0.679512690518018	0	lncRNA	39275-1_{1..2532}	n381566|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lfa.1||0.2759390|-0.3440306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n381566|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lfa.1||0.2759390|-0.3440306	chr10	122521323	122523854	-	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20"	NA	inter
CUST_31785_PI429285431	3.9518497	P	0.9063485	A	8.25633323071335	0	lncRNA	33524-1_{1..2684}	n338326|AK124299|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|720|NULL|-1.2998400|-0.4438125	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338326|AK124299|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|720|NULL|-1.2998400|-0.4438125	chr14	 60763119	 60765802	+	NA	NA	NA	NA	PPM1A	NA	chr14:60753119-60765805	inner
CUST_38853_PI429285431	4.288602	P	2.5109875	A	3.42858787719892	0	lncRNA	39844-1_{1..3000}	n384704|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kke.2||-1.0164100|-0.3069806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384704|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kke.2||-1.0164100|-0.3069806	chr5	 92745064	 92748063	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51894_PI429285431	5.6272435	P	6.499233	P	0.546392846207944	0	lncRNA	55441-2_{3001..4257}	hg19_lincRNAsTranscripts_TCONS_l2_00012717 range=chr19:56116597-56128713 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012717 range=chr19:56116597-56128713 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 56119597	 56120853	+	NA	NA	NA	NA	ZNF784	NA	chr19:56132107-56135941	inner
CUST_33871_PI429285431	0.9075684	A	0.930298	A	0.98436850197788	0	lncRNA	35415-1_{1..671}	n340659|AJ406935|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3121|NULL|-0.1179630|-0.1589600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340659|AJ406935|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3121|NULL|-0.1179630|-0.1589600	chr17	 39323475	 39324145	-	NA	NA	NA	NA	KRTAP4-3	NA	chr17:39323483-39324424	inner
CUST_19937_PI429285431	2.9335172	A	3.6158223	P	0.623168795960017	0	lncRNA	21592-1_{1..410}	lnc-CCDC64B-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC64B-1:4	chr16	  3108997	  3109406	-	lnc-CCDC64B-1	lnc-CCDC64B-1:4	ENSG00000261971.1	RP11-473M20.7	IL32	"hg19_refFlat_MMP25:range=chr16:3096919-31090995'pad=0,hg19_refFlat_MMP25:range=chr16:3096919-31090995'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.80chr16:3115313-3119086"	NA	inner
CUST_37353_PI429285431	3.8759599	P	3.9450974	P	0.953207692890347	0	lncRNA	38457-1_{1..289}	n345798|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1347|NULL|-1.3224900|-0.2250962	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345798|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1347|NULL|-1.3224900|-0.2250962	chr7	 64498789	 64499077	-	NA	NA	NA	NA	NA	"hg19_refFlat_CCT6A:range=chr7:56119542-561307785'pad=0,hg19_refFlat_CCT6A:range=chr7:56119542-561307785'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_VKORC1L1:range=chr7:65338359-654192875'pad=0,hg19_refFlat_VKORC1L1:range=chr7:65338359-654192875'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.40"	NA	inter
CUST_11361_PI429285431	2.0844164	A	1.2803814	A	1.74597753943304	0	lncRNA	12925-1_{1..341}	lnc-DHX37-9:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-9:6	chr12	127174796	127175136	-	lnc-DHX37-9	lnc-DHX37-9:6	XLOC_010243	linc-DHX37-8	NA	NA	NA	inter
CUST_30685_PI429285431	5.9452605	P	6.4263067	P	0.716457881402049	0	lncRNA	32467-1_{1..212}	n336173|X92773|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324575|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324575|0.1942440|-0.1713994	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336173|X92773|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324575|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324575|0.1942440|-0.1713994	chr7	142021220	142021431	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1382_PI429285431	0.89481276	A	0.90321636	A	0.99419200037588	0	lncRNA	1370-1_{1..947}	"transcript_id ""ENST00000491567.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000491567.1"" | genecode_v17"	chr3	 72252095	 72253041	-	ENSG00000242618.1	ENST00000491567.1	RP11-433A10.2	RP11-433A10.2-001	NA	NA	NA	inter
CUST_12954_PI429285431	0.90006924	A	0.91855705	A	0.987266986215928	0	lncRNA	14582-1_{1..998}	lnc-AC099552.4.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC099552.4.1-3:1	chr7	155068862	155069859	-	lnc-AC099552.4.1-3	lnc-AC099552.4.1-3:1	XLOC_006664	linc-PAXIP1-1	NA	NA	NA	inter
LNCA_21_P0006083	4.5075793	P	3.5810971	P	1.90063591972921	0	lncRNA	ENST00000397864	NA	NA	NA	NA	XLOC_007750	NA	ENST00000397864	NA	NA	"BROAD Institute lincRNA (XLOC_007750), lincRNA [TCONS_00015839]"	chr9:83484732-83484673	hs|9q21.31	Agilent_HUMAN_G3V2	ENST00000397864	ENST00000397864	chr9	 83484673	 83484732	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006875	0.8953422	A	0.9134752	A	0.987509820125822	0	lncRNA	TCONS_00018214	NA	NA	NA	NA	XLOC_008495	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008495), lincRNA [TCONS_00018214]"	chr10:63238877-63238936	hs|10q21.2	Agilent_HUMAN_G3V2	TCONS_00018214	TCONS_00018214	chr10	 63238877	 63238936	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29927_PI429285431	9.135739	P	9.85737	P	0.606411492358727	0	lncRNA	31691-1_{1..432}	n334090|M36809|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195697|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195697|1.6548500|-0.2196511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334090|M36809|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195697|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195697|1.6548500|-0.2196511	chr3	139237254	139237685	-	NA	NA	NA	NA	RBP1	NA	chr3:139227254-139258671	inner
CUST_7105_PI429285431	1.8319995	A	0.891294	A	1.91946665781354	0	lncRNA	7040-1_{1..741}	"transcript_id ""ENST00000418369.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418369.1"" | genecode_v17"	chrX	 90562780	 90563520	+	ENSG00000206062.4	ENST00000418369.1	RP13-212L9.1	RP13-212L9.1-001	NA	NA	NA	inter
CUST_13994_PI429285431	0.8963711	A	1.0065979	A	0.926442408339942	0	lncRNA	15639-1_{1..1414}	lnc-ALDH7A1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALDH7A1-2:1	chr5	125620682	125622095	-	lnc-ALDH7A1-2	lnc-ALDH7A1-2:1	XLOC_004984	linc-ZNF608-3	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50"	NA	inter
CUST_25699_PI429285431	3.7853122	P	3.8392465	P	0.963305761743878	0	lncRNA	27227-1_{1..436}	lnc-RBP7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RBP7-1:1	chr1	 10044341	 10044776	+	lnc-RBP7-1	lnc-RBP7-1:1	ENSG00000241326.1	RP11-807G9.2	NMNAT1	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-34.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70chr1:10034341-10045556"	NA	inner
CUST_24076_PI429285431	5.938692	P	6.543232	P	0.657681046765998	0	lncRNA	25626-1_{1..467}	lnc-SLC1A7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC1A7-1:1	chr1	 53550807	 53551273	-	lnc-SLC1A7-1	lnc-SLC1A7-1:1	ENSG00000232993.1	RP11-334A14.5	PODN	"hg19_refFlat_PODN:range=chr1:53527892-535478335'pad=0,hg19_refFlat_PODN:range=chr1:53527892-535478335'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10;hg19_refFlat_PODN:range=chr1:53532508-535478335'pad=0,hg19_refFlat_PODN:range=chr1:53532508-535478335'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10chr1:53540807-53551174"	NA	inner
CUST_35503_PI429285431	9.050204	P	9.2394285	P	0.8770770548001	0	lncRNA	36912-1_{1..1117}	n342608|AK026546|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5109|NULL|-1.3051500|-0.3672404	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342608|AK026546|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5109|NULL|-1.3051500|-0.3672404	chr4	 74861358	 74862474	-	NA	NA	NA	NA	CXCL5	NA	chr4:74861359-74864416	inner
CUST_37563_PI429285431	4.6694255	P	5.128609	P	0.72739781638092	0	lncRNA	38665-1_{1..737}	n346038|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1588|NULL|-1.3970400|-0.2434398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346038|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1588|NULL|-1.3970400|-0.2434398	chr3	 40487843	 40488579	+	NA	NA	NA	NA	RPL14	NA	chr3:40498801-40503859	inter
CUST_15145_PI429285431	1.4296063	A	1.6970929	A	0.830765609207971	0	lncRNA	16809-1_{1..291}	lnc-ARHGEF9-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGEF9-1:5	chrX	 62780712	 62781002	-	lnc-ARHGEF9-1	lnc-ARHGEF9-1:5	XLOC_008174	linc-SPIN4	NA	NA	NA	inter
CUST_30686_PI429285431	5.9372635	P	6.257862	P	0.800737623804635	0	lncRNA	32468-1_{1..325}	n336174|X92774|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324576|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324576|1.2209000|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336174|X92774|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324576|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324576|1.2209000|-1.0000000	chr14	 22337289	 22337613	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005886	0.8740615	A	0.8778606	A	0.997370128732685	0	lncRNA	TCONS_00015139	NA	NA	NA	NA	XLOC_007184	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007184), lincRNA [TCONS_00015139]"	chr8:115315254-115315195	hs|8q23.3	Agilent_HUMAN_G3V2	TCONS_00015139	TCONS_00015139	chr8	115315195	115315254	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005803	0.8738336	A	0.87715566	A	0.997699972603183	0	lncRNA	ENST00000522130	NA	NA	NA	NA	MSR1	macrophage scavenger receptor 1	ENST00000522130	NA	GO:0005515|GO:0005581|GO:0005886|GO:0010744|GO:0030169|GO:0030301|GO:0031410|GO:0010886|GO:0042221|GO:0006898|GO:0005829|GO:0042953|GO:0005887|GO:0034381|GO:0034362|GO:0004872|GO:0005044	"BROAD Institute lincRNA (XLOC_007013), lincRNA [TCONS_00014939]"	chr8:16325478-16325419	hs|8p22	Agilent_HUMAN_G3V2	ENST00000522130	ENST00000522130	chr8	 16325419	 16325478	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007038	7.716733	P	7.731331	P	0.989932457882684	0	lncRNA	TCONS_00018649	NA	NA	NA	NA	XLOC_009000	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009000), lincRNA [TCONS_00018649]"	chr10:133730253-133730194	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_00018649	TCONS_00018649	chr10	133730194	133730253	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5375_PI429285431	3.7096958	P	3.7962465	P	0.941771715808872	0	lncRNA	5312-1_{1..446}	"transcript_id ""ENST00000567096.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567096.1"" | genecode_v17"	chr16	   760746	   761191	-	ENSG00000259840.1	ENST00000567096.1	LA16c-380A1.1	LA16c-380A1.1-001	FBXL16	NA	chr16:750746-755825	inter
CUST_33357_PI429285431	1.7301024	A	0.9104053	A	1.76503537694301	0	lncRNA	34937-1_{1..1236}	n340075|CR590180|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2530|NULL|-1.1904200|-0.3846502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340075|CR590180|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2530|NULL|-1.1904200|-0.3846502	chr10	 75502752	 75503987	-	NA	NA	NA	NA	SEC24C	NA	chr10:75504131-75513988	inter
CUST_31423_PI429285431	3.309754	P	3.45264	P	0.905705547936454	0	lncRNA	33195-1_{1..3000}	n337890|AL157461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|273|NULL|1.4498600|-0.1964324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n337890|AL157461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|273|NULL|1.4498600|-0.1964324	chr1	 41480261	 41483260	+	NA	NA	NA	NA	SCMH1	"hg19_refFlat_SCMH1:range=chr1:41493866-416254025'pad=0,hg19_refFlat_SCMH1:range=chr1:41493866-416254025'pad=0 3'pad=0 strand=- repeatMasking=none,-98.10;hg19_refFlat_SCMH1:range=chr1:41493866-416087485'pad=0,hg19_refFlat_SCMH1:range=chr1:41493866-416087485'pad=0 3'pad=0 strand=- repeatMasking=none,-98.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SCMH1:range=chr1:41493866-416518055'pad=0,hg19_refFlat_SCMH1:range=chr1:41493866-416518055'pad=0 3'pad=0 strand=- repeatMasking=none,-98.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SLFNL1:range=chr1:41481778-414863325'pad=0,hg19_refFlat_SLFNL1:range=chr1:41481778-414863325'pad=0 3'pad=0 strand=- repeatMasking=none,-105.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_SCMH1:range=chr1:41493866-416183465'pad=0,hg19_refFlat_SCMH1:range=chr1:41493866-416183465'pad=0 3'pad=0 strand=- repeatMasking=none,-98.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50chr1:41492871-41519562"	NA	inner
LNCA_21_P0010260	7.957617	P	8.01976	P	0.957840272344613	0	lncRNA	TCONS_00029049	NA	NA	NA	NA	XLOC_013965	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013965), lincRNA [TCONS_00029049]"	chr21:44887367-44887426	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029049	TCONS_00029049	chr21	 44887367	 44887426	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30659_PI429285431	5.9559255	P	6.2679796	P	0.80549408504829	0	lncRNA	32441-1_{1..240}	n336095|X87197|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324270|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324270|2.6960400|-0.0198409	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336095|X87197|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324270|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324270|2.6960400|-0.0198409	chrX	153698929	153699168	+	NA	NA	NA	NA	PLXNA3	NA	chrX:153688929-153701985	inner
LNCA_21_P0005236	0.8751066	A	0.87555873	A	0.999686656467596	0	lncRNA	ENST00000449899	NA	NA	NA	NA	XLOC_006106	NA	ENST00000449899	NA	NA	"BROAD Institute lincRNA (XLOC_006106), lincRNA [TCONS_00013016]"	chr7:55662640-55662699	hs|7p11.2	Agilent_HUMAN_G3V2	ENST00000449899	ENST00000449899	chr7	 55662640	 55662699	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47499_PI429285431	10.770152	P	10.7651205	P	1.00349365868751	0	lncRNA	51513-1_{1..2710}	"gi|342672044|ref|NR_036550.2| Homo sapiens pescadillo ribosomal biogenesis factor 1 (PES1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|342672044|ref|NR_036550.2| Homo sapiens pescadillo ribosomal biogenesis factor 1 (PES1), transcript variant 2, non-coding RNA"	Chr22	 30972612	 30975321	-	23481	NR_036550.2	NA	NA	NA	NA	NA	inter
CUST_6395_PI429285431	9.216813	P	9.6545925	P	0.738270030637701	0	lncRNA	6327-1_{1..159}	"transcript_id ""ENST00000598658.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598658.1"" | genecode_v17"	chr19	 22789977	 22790135	+	ENSG00000268823.1	ENST00000598658.1	CTC-457E21.6	CTC-457E21.6-002	NA	NA	NA	inter
LNCA_33_P3241250	8.022291	P	7.97619	P	1.03247081403079	0	lncRNA	XR_132464	XR_132464	XR_132464	   401357	Hs.520384	LOC401357	uncharacterized LOC401357	NA	THC2481823	NA	"PREDICTED: Homo sapiens hypothetical LOC401357 (LOC401357), miscRNA [XR_132464]"	chr7:56876826-56876817	hs|7p11.2	Agilent_HUMAN_G3V2	XR_132464	XR_132464	chr7	 56876817	 56876826	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002250	0.8755196	A	0.8773365	A	0.998741413572716	0	lncRNA	THC2498339	NA	NA	NA	NA	XLOC_001550	NA	NA	THC2498339	NA	"BROAD Institute lincRNA (XLOC_001550), lincRNA [TCONS_00003752]"	chr2:085194244-085194303	hs|2p11.2	Agilent_HUMAN_G3V2	THC2498339	THC2498339	chr2	 85194244	 85194303	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33392_PI429285431	2.3438332	A	2.1463046	A	1.14673226871567	0	lncRNA	34970-1_{1..2099}	n340112|AK093668|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2571|NULL|2.5346300|-0.2126921	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340112|AK093668|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2571|NULL|2.5346300|-0.2126921	chr10	 98134350	 98136448	+	NA	NA	NA	NA	TLL2	NA	chr10:98124363-98146449	inner
CUST_6549_PI429285431	13.49627	P	13.878054	P	0.767487947533962	0	lncRNA	6497-1_{1..2468}	"transcript_id ""ENST00000599877.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599877.1"" | genecode_v17"	chr19	 48983104	 48985571	+	ENSG00000269751.1	ENST00000599877.1	CTC-273B12.8	CTC-273B12.8-002	LMTK3	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-60.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10chr19:48988528-48995571"	NA	inner
CUST_25437_PI429285431	2.8621168	A	3.153073	P	0.817360143040083	0	lncRNA	26967-1_{1..429}	lnc-ASB7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASB7-1:2	chr15	101099840	101100268	+	lnc-ASB7-1	lnc-ASB7-1:2	ENSG00000259540.1	RP11-526I2.1	LINS	"hg19_refFlat_PRKX:range=chrX:3530241-36312945'pad=0,hg19_refFlat_PRKX:range=chrX:3530241-36312945'pad=0 3'pad=0 strand=- repeatMasking=none,-98.70chr15:101109428-101110003"	NA	inter
CUST_191_PI429285431	5.1761556	P	5.4183154	P	0.845478632818129	0	lncRNA	181-1_{1..441}	"transcript_id ""ENST00000440492.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440492.1"" | genecode_v17"	chr1	 27986839	 27987279	-	ENSG00000233975.1	ENST00000440492.1	RP11-288L9.1	RP11-288L9.1-001	IFI6	NA	chr1:27992572-27998724	inter
CUST_26707_PI429285431	0.88112825	A	0.9143921	A	0.977207031718534	0	lncRNA	28204-1_{1..1272}	n1175|AF252280|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1175|NULL|-1.5906100|-0.3209436	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n1175|AF252280|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1175|NULL|-1.5906100|-0.3209436	chr13	 70682043	 70683314	+	NA	NA	NA	NA	KLHL1	NA	chr13:70672043-70682625	inner
LNCA_21_P0007948	9.458572	P	9.801575	P	0.78839853462591	0	lncRNA	ENST00000448806	NA	NA	NA	NA	XLOC_010435	NA	ENST00000448806	NA	NA	"BROAD Institute lincRNA (XLOC_010435), lincRNA [TCONS_00021570]"	chr13:76587282-76588543	hs|13q22.2	Agilent_HUMAN_G3V2	ENST00000448806	ENST00000448806	chr13	 76587282	 76588543	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40236_PI429285431	2.1699674	A	0.88071346	A	2.44401635585862	0	lncRNA	41055-1_{1..2579}	n408126|NR_028064|lncRNA|Homosapiens||RefGeneNoncode|NR_028064||-0.3402940|-0.0826025	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408126|NR_028064|lncRNA|Homosapiens||RefGeneNoncode|NR_028064||-0.3402940|-0.0826025	chr13	114451483	114454061	-	NA	NA	NA	NA	FAM70B	NA	chr13:114462216-114464062	inter
CUST_23199_PI429285431	1.1154013	A	1.188766	A	0.950418813749703	0	lncRNA	24771-1_{1..391}	lnc-UTS2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UTS2-3:2	chr1	  7449400	  7449790	-	lnc-UTS2-3	lnc-UTS2-3:2	ENSG00000237728.1	RP3-453P22.2	CAMTA1	NA	chr1:7439400-7459479	inner
CUST_43509_PI429285431	3.2309372	P	3.4097147	P	0.883451291469608	0	lncRNA	48297-2_{3001..3429}	"gi|224177485|ref|NR_026985.1| Homo sapiens uncharacterized LOC339524 (LOC339524), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224177485|ref|NR_026985.1| Homo sapiens uncharacterized LOC339524 (LOC339524), transcript variant 1, non-coding RNA"	Chr1	 87600609	 87601037	+	339524	NR_026985.1	NA	NA	NA	NA	NA	inter
CUST_48029_PI429285431	5.2782006	P	5.5737967	P	0.814735626278735	0	lncRNA	51911-1_{1..3000}	"gi|410173781|ref|XR_172395.1| PREDICTED: Homo sapiens uncharacterized LOC101060697 (LOC101060697), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173781|ref|XR_172395.1| PREDICTED: Homo sapiens uncharacterized LOC101060697 (LOC101060697), misc_RNA"	NA	NA	NA	NA	NA	XR_172395.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002239	3.1888502	P	2.7596996	A	1.34644061413729	0	lncRNA	TCONS_00003731	NA	NA	NA	NA	XLOC_001526	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001526), lincRNA [TCONS_00003731]"	chr2:72005093-72005152	hs|2p13.2	Agilent_HUMAN_G3V2	TCONS_00003731	TCONS_00003731	chr2	 72005093	 72005152	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15200_PI429285431	0.9020364	A	0.9078739	A	0.99596192835975	0	lncRNA	16868-1_{1..500}	lnc-FRMD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRMD3-1:1	chr9	 86189825	 86190324	-	lnc-FRMD3-1	lnc-FRMD3-1:1	XLOC_007753	linc-FRMD3	NA	NA	NA	inter
LNCA_21_P0004244	2.571684	A	5.9524946	P	0.0960007442061285	0	lncRNA	TCONS_00009933	NA	NA	NA	NA	XLOC_004361	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004361), lincRNA [TCONS_00009933]"	chr5:42924780-42924839	hs|5p12	Agilent_HUMAN_G3V2	TCONS_00009933	TCONS_00009933	chr5	 42924780	 42924839	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18368_PI429285431	3.7748299	P	1.9797212	A	3.47041621760979	0	lncRNA	20096-1_{1..1413}	lnc-CCDC150-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCDC150-1:2	chr2	197127775	197129187	+	lnc-CCDC150-1	lnc-CCDC150-1:2	ENSG00000229056	AC020571.3	HECW2	NA	chr2:197117775-197138928	inner
CUST_30232_PI429285431	0.92291117	A	0.9705432	A	0.96752307203412	0	lncRNA	32007-1_{1..443}	n335100|AL079282|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250121|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250121|-0.8278150|-0.3023661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335100|AL079282|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250121|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250121|-0.8278150|-0.3023661	chrX	 11655881	 11656323	-	NA	NA	NA	NA	ARHGAP6	NA	chrX:11645881-11666324	inner
CUST_605_PI429285431	1.2402865	A	0.9130165	A	1.25463698753496	0	lncRNA	597-1_{1..390}	"transcript_id ""ENST00000429507.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429507.1"" | genecode_v17"	chr1	234701044	234701433	+	ENSG00000230404.1	ENST00000429507.1	RP5-855F14.2	RP5-855F14.2-001	NA	NA	NA	inter
CUST_39598_PI429285431	15.654577	P	15.683306	P	0.98028353733701	0	lncRNA	40542-1_{1..523}	n387614|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jyj.1||2.7478500|-0.1945767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387614|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011jyj.1||2.7478500|-0.1945767	chr7	 20866916	 20867438	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12487_PI429285431	0.9041424	A	0.9587171	A	0.962878253438898	0	lncRNA	14098-1_{1..966}	lnc-AC092327.1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092327.1-2:6	chr16	 86260246	 86261211	-	lnc-AC092327.1-2	lnc-AC092327.1-2:6	XLOC_012044	linc-COX4NB-7	NA	NA	NA	inter
CUST_31444_PI429285431	4.863428	P	4.8431935	P	1.01412430521503	0	lncRNA	33212-2_{3001..3878}	n337912|AK025352|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|295|NULL|-0.7567950|-0.1954253	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337912|AK025352|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|295|NULL|-0.7567950|-0.1954253	chr1	 46497558	 46498435	-	NA	NA	NA	NA	MAST2	"hg19_refFlat_MAST2:range=chr1:46269568-465017385'pad=0,hg19_refFlat_MAST2:range=chr1:46269568-465017385'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.90chr1:46484558-46501796"	NA	inner
LNCA_21_P0009048	3.2867022	P	2.470038	A	1.76132873573494	0	lncRNA	TCONS_00024700	NA	NA	NA	NA	XLOC_011979	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011979), lincRNA [TCONS_00024700]"	chr16:66041563-66041504	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024700	TCONS_00024700	chr16	 66041504	 66041563	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10937_PI429285431	5.225194	P	5.634905	P	0.752774153971534	0	lncRNA	12478-1_{1..308}	lnc-TOX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TOX2-1:1	chr20	 42523663	 42523970	+	lnc-TOX2-1	lnc-TOX2-1:1	XLOC_013528	linc-TOX2	NA	NA	NA	inter
CUST_50989_PI429285431	3.489151	P	3.87556	P	0.765031469888172	0	lncRNA	54633-1_{1..295}	hg19_lincRNAsTranscripts_TCONS_l2_00005952 range=chr12:122502207-122502617 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005952 range=chr12:122502207-122502617 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	122502207	122502501	+	NA	NA	NA	NA	BCL7A	NA	chr12:122492207-122499950	inter
CUST_478_PI429285431	1.9568354	A	2.1992462	A	0.84533154928952	0	lncRNA	469-1_{1..388}	"transcript_id ""ENST00000451439.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451439.1"" | genecode_v17"	chr1	170240908	170241295	-	ENSG00000224286.1	ENST00000451439.1	RP11-297H3.4	RP11-297H3.4-002	NA	NA	NA	inter
CUST_29979_PI429285431	4.7437587	P	4.6484423	P	1.06829967304835	0	lncRNA	31745-1_{1..276}	n334235|S64316|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216048|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216048|0.7597520|-0.1479332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334235|S64316|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216048|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216048|0.7597520|-0.1479332	chr11	 88242543	 88242818	-	NA	NA	NA	NA	GRM5	NA	chr11:88237744-88310273	inner
CUST_48102_PI429285431	0.9156794	A	0.92722946	A	0.992026070274146	0	lncRNA	51976-1_{1..1933}	"gi|397138463|ref|XR_159500.1| PREDICTED: Homo sapiens uncharacterized LOC100130609 (PP12708), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138463|ref|XR_159500.1| PREDICTED: Homo sapiens uncharacterized LOC100130609 (PP12708), misc_RNA"	NA	NA	NA	NA	NA	XR_159500.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	Unknown
LNCA_21_P0005690	2.4004586	A	4.584764	P	0.220018173440922	0	lncRNA	TCONS_00014681	NA	NA	NA	NA	XLOC_006779	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006779), lincRNA [TCONS_00014681]"	chr8:39891738-39891797	hs|8p11.21	Agilent_HUMAN_G3V2	TCONS_00014681	TCONS_00014681	chr8	 39891738	 39891797	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4579_PI429285431	0.9553414	A	0.89030594	A	1.04611065182923	0	lncRNA	4528-1_{1..276}	"transcript_id ""ENST00000444319.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444319.1"" | genecode_v17"	chr13	 30944609	 30944884	-	ENSG00000238121.1	ENST00000444319.1	LINC00426	LINC00426-009	NA	NA	NA	inter
CUST_37080_PI429285431	2.8609912	A	2.155292	A	1.63093490346445	0	lncRNA	38207-2_{3001..4067}	n345524|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1073|NULL|-1.6732000|-0.3016486	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345524|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1073|NULL|-1.6732000|-0.3016486	chr2	 46868335	 46869401	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004173	0.87842774	A	0.88750994	A	0.993724472570129	0	lncRNA	ENST00000515704	NA	NA	NA	NA	XLOC_004965	NA	ENST00000515704	NA	NA	"BROAD Institute lincRNA (XLOC_004965), lincRNA [TCONS_00009760]"	chr5:117888112-117888053	hs|5q23.1	Agilent_HUMAN_G3V2	ENST00000515704	ENST00000515704	chr5	117888053	117888112	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004936	5.523184	P	5.5068593	P	1.01137968129415	0	lncRNA	TCONS_00011945	NA	NA	NA	NA	XLOC_005455	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005455), lincRNA [TCONS_00011945]"	chr6:123427077-123427325	hs|6q22.31	Agilent_HUMAN_G3V2	TCONS_00011945	TCONS_00011945	chr6	123427077	123427325	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008058	4.950585	P	5.3485684	P	0.758918358735992	0	lncRNA	TCONS_00021771	NA	NA	NA	NA	XLOC_010367	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010367), lincRNA [TCONS_00021771]"	chr13:43787505-43787647	hs|13q14.11	Agilent_HUMAN_G3V2	TCONS_00021771	TCONS_00021771	chr13	 43787505	 43787647	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12778_PI429285431	0.92453486	A	0.898403	A	1.0182782645027	0	lncRNA	14402-1_{1..2533}	lnc-PENK-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PENK-2:9	chr8	 57472012	 57474544	-	lnc-PENK-2	lnc-PENK-2:9	XLOC_007087	linc-PENK-1	NA	NA	NA	inter
CUST_12643_PI429285431	8.051968	P	7.937649	P	1.08246396594998	0	lncRNA	14261-1_{1..3000}	lnc-NKX2-5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NKX2-5-1:1	chr5	172669696	172672695	-	lnc-NKX2-5-1	lnc-NKX2-5-1:1	XLOC_005085	linc-NKX2-5-1	NKX2-5	NA	chr5:172659696-172662315	inter
LNCA_19_P00811613	3.74357	P	4.4660025	P	0.606074689492489	0	lncRNA	BC090887	NA	BC090887	NA	NA	XLOC_l2_015098	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015098), lincRNA [TCONS_l2_00029173]"	chr9:2503335-2503276	hs|9p24.2	Agilent_HUMAN_G3V2	BC090887	BC090887	chr9	  2503276	  2503335	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41227_PI429285431	0.89902997	A	0.8912797	A	1.00538653328275	0	lncRNA	42133-1_{1..67}	ENST00000582598 ncrna:miRNA chromosome:GRCh37:8:28362633:28362699:-1 gene:ENSG00000265251 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582598 ncrna:miRNA chromosome:GRCh37:8:28362633:28362699:-1 gene:ENSG00000265251 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 28362633	 28362699	-	ENSG00000265251	ENST00000582598	NA	NA	FZD3	NA	chr8:28352633-28372699	inner
LNCA_21_P0006036	0.87343466	A	0.87569535	A	0.99843423618959	0	lncRNA	ENST00000448515	NA	NA	NA	NA	XLOC_007495	NA	ENST00000448515	NA	NA	"BROAD Institute lincRNA (XLOC_007495), lincRNA [TCONS_00015728]"	chr9:105052849-105052908	hs|9q31.1	Agilent_HUMAN_G3V2	ENST00000448515	ENST00000448515	chr9	105052849	105052908	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007544	9.490342	P	9.2245245	P	1.20231714692783	0	lncRNA	ENST00000551503	XR_110375	XR_110375	NA	Hs.729166	XLOC_009723	NA	ENST00000551503	THC2681113	NA	"PREDICTED: Homo sapiens hypothetical LOC100288798 (LOC100288798), miscRNA [XR_110375]"	chr12:46781651-46781710	hs|12q13.11	Agilent_HUMAN_G3V2	ENST00000551503	ENST00000551503	chr12	 46781651	 46781710	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45762_PI429285431	10.301604	P	9.893896	P	1.32657661567394	0	lncRNA	50107-1_{1..1433}	"gi|354682003|ref|NR_045418.1| Homo sapiens A kinase (PRKA) interacting protein 1 (AKIP1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|354682003|ref|NR_045418.1| Homo sapiens A kinase (PRKA) interacting protein 1 (AKIP1), transcript variant 6, non-coding RNA"	Chr11	  8932739	  8934171	+	56672	NR_045418.1	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40"	NA	inter
CUST_26399_PI429285431	3.390983	P	3.8934798	P	0.705884085254705	0	lncRNA	27906-1_{1..745}	lnc-HAO2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HAO2-2:1	chr1	119693416	119694160	+	lnc-HAO2-2	lnc-HAO2-2:1	ENSG00000231365.1	RP11-418J17.1	NA	"hg19_refFlat_WARS2:range=chr1:119575534-1196832675'pad=0,hg19_refFlat_WARS2:range=chr1:119575534-1196832675'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_WARS2:range=chr1:119575983-1196832675'pad=0,hg19_refFlat_WARS2:range=chr1:119575983-1196832675'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60"	NA	inter
CUST_26147_PI429285431	3.2746284	P	3.155112	P	1.08637064355285	0	lncRNA	27658-1_{1..557}	lnc-PTPLA-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPLA-2:1	chr10	 17742188	 17742744	-	lnc-PTPLA-2	lnc-PTPLA-2:1	ENSG00000229190.1	RP11-390B4.3	STAM	"hg19_refFlat_STAM:range=chr10:17686339-177567795'pad=0,hg19_refFlat_STAM:range=chr10:17686339-177567795'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90chr10:17732188-17752231"	NA	inter
LNCA_21_P0002078	0.87354934	A	0.8745215	A	0.999326377022846	0	lncRNA	ENST00000431897	NA	NA	NA	NA	XLOC_002231	NA	ENST00000431897	NA	NA	"BROAD Institute lincRNA (XLOC_002231), lincRNA [TCONS_00003344]"	chr2:103583928-103583869	hs|2q12.1	Agilent_HUMAN_G3V2	ENST00000431897	ENST00000431897	chr2	103583869	103583928	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6255_PI429285431	0.8836246	A	0.88091993	A	1.00187649279803	0	lncRNA	6180-1_{1..719}	"transcript_id ""ENST00000562582.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562582.1"" | genecode_v17"	chr18	 72076650	 72077368	+	ENSG00000259779.1	ENST00000562582.1	RP11-231E4.2	RP11-231E4.2-002	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10"	NA	inter
CUST_11006_PI429285431	0.8741805	A	0.92042613	A	0.968453288519117	0	lncRNA	12551-1_{1..1038}	lnc-LHFP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LHFP-1:1	chr13	 39910408	 39911445	-	lnc-LHFP-1	lnc-LHFP-1:1	XLOC_010576	linc-C13orf23-1	LHFP	NA	chr13:39917029-39921246	inter
CUST_16545_PI429285431	1.6279361	A	2.360197	A	0.601959821094102	0	lncRNA	18246-1_{1..570}	lnc-NAPB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAPB-1:1	chr20	 23338592	 23339161	-	lnc-NAPB-1	lnc-NAPB-1:1	XLOC_013693	linc-CD93-1	GZF1	NA	chr20:23345021-23348851	inter
CUST_12817_PI429285431	4.9973917	P	5.345707	P	0.78550082724628	0	lncRNA	14446-1_{1..3000}	lnc-GAS6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GAS6-3:1	chr13	114631636	114634635	-	lnc-GAS6-3	lnc-GAS6-3:1	XLOC_010743	linc-GAS6-2	NA	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10"	NA	inter
CUST_42785_PI429285431	2.9533358	A	3.3929667	P	0.737323221750471	0	lncRNA	45775-1_{1..78}	ENST00000364630 ncrna:snoRNA chromosome:GRCh37:14:101443726:101443803:1 gene:ENSG00000201500 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364630 ncrna:snoRNA chromosome:GRCh37:14:101443726:101443803:1 gene:ENSG00000201500 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101443726	101443803	+	ENSG00000201500	ENST00000364630	NA	NA	NA	NA	NA	inter
CUST_29689_PI429285431	4.641681	P	4.6287823	P	1.00898078495488	0	lncRNA	31451-1_{1..287}	n333348|AY258330|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085634|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085634|-0.9310190|-0.1155007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333348|AY258330|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085634|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085634|-0.9310190|-0.1155007	chr22	 46546501	 46546787	+	NA	NA	NA	NA	PPARA	NA	chr22:46546499-46604307	inner
CUST_15698_PI429285431	2.3513608	A	2.1685755	A	1.1350731694631	0	lncRNA	17385-1_{1..1401}	lnc-SLC38A2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC38A2-1:4	chr12	 46888055	 46889455	-	lnc-SLC38A2-1	lnc-SLC38A2-1:4	XLOC_010061	linc-SLC38A2	NA	NA	NA	inter
CUST_19185_PI429285431	2.3640332	A	1.3258389	A	2.05365565607342	0	lncRNA	20855-1_{1..572}	lnc-CTD-2054N24.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2054N24.2.1-1:1	chr15	100513831	100514402	+	lnc-CTD-2054N24.2.1-1	lnc-CTD-2054N24.2.1-1:1	ENSG00000254744.3	CTD-3076O17.1	ADAMTS17	NA	chr15:100511643-100524215	inner
CUST_7608_PI429285431	4.0174165	P	4.954364	P	0.52233688904422	0	lncRNA	9243-1_{1..1485}	lnc-C19orf26-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C19orf26-2:1	chr19	  1259059	  1260543	-	lnc-C19orf26-2	lnc-C19orf26-2:1	ENSG00000247073	ENST00000499925	MIDN	NA	chr19:1249059-1259142	inner
LNCA_21_P0001531	7.6652637	P	7.949111	P	0.821397635813062	0	lncRNA	TCONS_00001559	NA	NA	NA	NA	XLOC_000901	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000901), lincRNA [TCONS_00001559]"	chr1:87818637-87818578	hs|1p22.3	Agilent_HUMAN_G3V2	TCONS_00001559	TCONS_00001559	chr1	 87818578	 87818637	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25278_PI429285431	0.8758634	A	0.8751471	A	1.00049662460262	0	lncRNA	26808-1_{1..513}	lnc-GGH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GGH-1:1	chr8	 63386530	 63387042	-	lnc-GGH-1	lnc-GGH-1:1	ENSG00000254050.1	RP11-577N1.1	NKAIN3	NA	chr8:63376530-63396828	inner
CUST_49058_PI429285431	5.8614025	P	5.6623507	P	1.1479436300586	0	lncRNA	52885-2_{3001..3514}	hg19_lincRNAsTranscripts_TCONS_l2_00020965 range=chr4:189659523-189663173 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020965 range=chr4:189659523-189663173 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	189662523	189663036	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43865_PI429285431	14.063255	P	14.338411	P	0.826360958119159	0	lncRNA	48586-1_{1..1799}	"gi|261399879|ref|NR_029403.1| Homo sapiens chaperonin containing TCP1, subunit 7 (eta) (CCT7), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|261399879|ref|NR_029403.1| Homo sapiens chaperonin containing TCP1, subunit 7 (eta) (CCT7), transcript variant 6, non-coding RNA"	Chr2	 73461364	 73463162	+	10574	NR_029403.1	NA	NA	NA	NA	NA	inter
CUST_51344_PI429285431	5.025639	P	5.2488008	P	0.856685871020423	0	lncRNA	54944-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008748 range=chr15:78181465-78191653 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008748 range=chr15:78181465-78191653 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 78181465	 78184464	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4242_PI429285431	2.8740861	A	1.5079577	A	2.57777867331553	0	lncRNA	4199-1_{1..460}	"transcript_id ""ENST00000552502.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552502.1"" | genecode_v17"	chr12	 48111374	 48111833	+	ENSG00000257433.1	ENST00000552502.1	RP1-197B17.3	RP1-197B17.3-002	ENDOU	"hg19_refFlat_ENDOU:range=chr12:48104585-481191965'pad=0,hg19_refFlat_ENDOU:range=chr12:48104585-481191965'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70chr12:48103517-48119355"	NA	inner
CUST_41129_PI429285431	4.950733	P	4.696125	P	1.19301154141487	0	lncRNA	41908-1_{1..137}	ENST00000583188 ncrna:miRNA chromosome:GRCh37:15:80873444:80873580:1 gene:ENSG00000266542 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583188 ncrna:miRNA chromosome:GRCh37:15:80873444:80873580:1 gene:ENSG00000266542 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 80873444	 80873580	+	ENSG00000266542	ENST00000583188	NA	NA	ARNT2	NA	chr15:80863444-80883580	inner
CUST_37146_PI429285431	1.9262748	A	2.467813	A	0.687037999202424	0	lncRNA	38265-1_{1..1588}	n345583|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1132|NULL|-1.3048900|-0.3292658	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345583|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1132|NULL|-1.3048900|-0.3292658	chr3	  9429770	  9431357	+	NA	NA	NA	NA	LOC100652926	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr3:9435634-9438752"	NA	inter
LNCA_21_P0008581	3.8423553	P	3.145028	P	1.62149806256363	0	lncRNA	TCONS_00023287	NA	NA	NA	NA	XLOC_011157	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011157), lincRNA [TCONS_00023287]"	chr15:20508789-20508848	hs|15q11.1	Agilent_HUMAN_G3V2	TCONS_00023287	TCONS_00023287	chr15	 20508789	 20508848	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44093_PI429285431	2.6222672	A	2.4381459	A	1.13612478472619	0	lncRNA	48760-1_{1..3000}	"gi|310124546|ref|XR_109937.1| PREDICTED: Homo sapiens uncharacterized FLJ45964 (FLJ45964), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124546|ref|XR_109937.1| PREDICTED: Homo sapiens uncharacterized FLJ45964 (FLJ45964), misc_RNA"	Chr2	240499995	240502994	+	401040	XR_109937.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0006817	0.9071589	A	0.93126327	A	0.983430926350772	0	lncRNA	TCONS_00018091	NA	NA	NA	NA	XLOC_008358	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008358), lincRNA [TCONS_00018091]"	chr10:4094946-4095005	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_00018091	TCONS_00018091	chr10	  4094946	  4095005	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14125_PI429285431	5.185539	P	4.8642673	P	1.24943140652676	0	lncRNA	15775-1_{1..1901}	lnc-C5orf63-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf63-2:1	chr5	126617905	126619805	-	lnc-C5orf63-2	lnc-C5orf63-2:1	XLOC_004989	linc-FLJ44606-1	MEGF10	NA	chr5:126626456-126628000	inter
CUST_42206_PI429285431	0.9110557	A	0.92316747	A	0.991639902384244	0	lncRNA	44292-1_{1..82}	ENST00000582487 ncrna:miRNA chromosome:GRCh37:5:159901409:159901490:1 gene:ENSG00000265237 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582487 ncrna:miRNA chromosome:GRCh37:5:159901409:159901490:1 gene:ENSG00000265237 gene_biotype:miRNA transcript_biotype:miRNA	chr5	159901409	159901490	+	ENSG00000265237	ENST00000582487	NA	NA	NA	NA	NA	inter
CUST_7825_PI429285431	9.150904	P	8.999786	P	1.1104296534741	0	lncRNA	9449-1_{1..2395}	lnc-RTL1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RTL1-2:2	chr14	101537120	101539514	-	lnc-RTL1-2	lnc-RTL1-2:2	ENSG00000248952	XLOC_011130	NA	NA	NA	inter
CUST_4846_PI429285431	0.90816814	A	1.2948737	A	0.764874226389431	0	lncRNA	4789-1_{1..752}	"transcript_id ""ENST00000556815.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556815.1"" | genecode_v17"	chr14	 59295006	 59295757	+	ENSG00000258583.1	ENST00000556815.1	RP11-112J1.2	RP11-112J1.2-002	NA	"hg19_refFlat_TMEM98:range=chr17:31258547-312680115'pad=0,hg19_refFlat_TMEM98:range=chr17:31258547-312680115'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90"	NA	inter
LNCA_21_P0004428	0.90654016	A	0.92979634	A	0.98400927555469	0	lncRNA	TCONS_00010430	NA	NA	NA	NA	XLOC_004945	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004945), lincRNA [TCONS_00010430]"	chr5:103216368-103216309	hs|5q21.2	Agilent_HUMAN_G3V2	TCONS_00010430	TCONS_00010430	chr5	103216309	103216368	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17889_PI429285431	0.92524433	A	0.9822897	A	0.961230699046226	0	lncRNA	19623-1_{1..940}	lnc-RNF152-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNF152-2:1	chr18	 59415939	 59416878	-	lnc-RNF152-2	lnc-RNF152-2:1	XLOC_012862	linc-MC4R-2	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70"	NA	inter
CUST_9728_PI429285431	3.9975998	P	4.2250166	P	0.854162934369328	0	lncRNA	11244-1_{1..928}	lnc-C8orf22-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-C8orf22-4:1	chr8	 49536232	 49537159	+	lnc-C8orf22-4	lnc-C8orf22-4:1	XLOC_006790	linc-C8orf22-2	NA	NA	NA	inter
CUST_15312_PI429285431	4.95728	P	4.265176	P	1.61563801801487	0	lncRNA	16991-1_{1..1225}	lnc-RP11-9B6.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-9B6.1.1-1:1	chr4	 93198201	 93199425	-	lnc-RP11-9B6.1.1-1	lnc-RP11-9B6.1.1-1:1	XLOC_004018	linc-TMSL3	NA	NA	NA	inter
CUST_19506_PI429285431	0.8966717	A	0.9052126	A	0.994097388512267	0	lncRNA	21162-1_{1..640}	lnc-C5orf43-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C5orf43-1:1	chr5	 60560604	 60561243	-	lnc-C5orf43-1	lnc-C5orf43-1:1	ENSG00000249279.1	CTC-436P18.3	NA	NA	NA	inter
CUST_30331_PI429285431	10.0206	P	10.564231	P	0.686042091741395	0	lncRNA	32107-1_{1..221}	n335247|AY548972|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255390|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255390|-0.2307120|-0.1097104	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335247|AY548972|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255390|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255390|-0.2307120|-0.1097104	chr11	 67817750	 67817970	+	NA	NA	NA	NA	CHKA	NA	chr11:67820326-67828288	inner
CUST_2207_PI429285431	0.897165	A	0.9084773	A	0.992189572295273	0	lncRNA	2199-1_{1..534}	"transcript_id ""ENST00000503568.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503568.1"" | genecode_v17"	chr5	 74343544	 74344077	-	ENSG00000250889.2	ENST00000503568.1	RP11-229C3.2	RP11-229C3.2-001	NA	NA	NA	inter
CUST_45517_PI429285431	1.2623348	A	0.91812754	A	1.26945324471222	0	lncRNA	49926-1_{1..2270}	"gi|217330619|ref|NR_024576.1| Homo sapiens Sec61 alpha 2 subunit (S. cerevisiae) (SEC61A2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|217330619|ref|NR_024576.1| Homo sapiens Sec61 alpha 2 subunit (S. cerevisiae) (SEC61A2), transcript variant 5, non-coding RNA"	Chr10	 12171640	 12173909	+	55176	NR_024576.1	NA	NA	NA	"hg19_refFlat_NUDT5:range=chr10:12209701-122282905'pad=0,hg19_refFlat_NUDT5:range=chr10:12209701-122282905'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30"	NA	inter
CUST_13109_PI429285431	0.8973752	A	0.91508853	A	0.987797121681219	0	lncRNA	14733-1_{1..385}	lnc-TSKU-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSKU-2:2	chr11	 76468608	 76468992	+	lnc-TSKU-2	lnc-TSKU-2:2	XLOC_009221	linc-TSKU-1	NA	NA	NA	inter
LNCA_21_P0014201	0.88715625	A	0.9022645	A	0.989582402112699	0	lncRNA	XR_108814	XR_108814	XR_108814	NA	Hs.635013	LOC100506860	uncharacterized LOC100506860	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506860, transcript variant 2 (LOC100506860), miscRNA [XR_108814]"	chr7:130613104-130613163	hs|7q32.3	Agilent_HUMAN_G3V2	XR_108814	XR_108814	chr7	130613104	130613163	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009068	0.8860561	A	0.9004878	A	0.990046574346442	0	lncRNA	TCONS_00024738	NA	NA	NA	NA	XLOC_012018	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012018), lincRNA [TCONS_00024738]"	chr16:80555143-80547458	hs|16q23.2	Agilent_HUMAN_G3V2	TCONS_00024738	TCONS_00024738	chr16	 80547458	 80555143	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51738_PI429285431	0.8800866	A	0.88719195	A	0.995087054869727	0	lncRNA	55291-1_{1..1587}	hg19_lincRNAsTranscripts_TCONS_00087323_lincROR range=chr18:54721803-54739350 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00087323_lincROR range=chr18:54721803-54739350 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 54721803	 54723389	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11649_PI429285431	0.9040467	A	0.9167012	A	0.991266925774616	0	lncRNA	13226-1_{1..210}	lnc-VCX3B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VCX3B-1:1	chrX	  8423675	  8423884	+	lnc-VCX3B-1	lnc-VCX3B-1:1	XLOC_007926	linc-VCX3B-1	VCX3B	NA	chrX:8432871-8433740	inter
CUST_37266_PI429285431	4.1046033	P	4.9745054	P	0.547183980787929	0	lncRNA	38374-1_{1..869}	n345705|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1254|NULL|-1.3590800|-0.1284271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345705|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1254|NULL|-1.3590800|-0.1284271	chr7	142494381	142495249	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44379_PI429285431	4.172398	P	5.1518073	P	0.507187361215279	0	lncRNA	49000-1_{1..2628}	"gi|224465253|ref|NR_027094.1| Homo sapiens synaptotagmin XIV-like (SYT14L), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224465253|ref|NR_027094.1| Homo sapiens synaptotagmin XIV-like (SYT14L), non-coding RNA"	Chr4	 68926328	 68928955	-	401135	NR_027094.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014646	0.87972796	A	1.5817682	A	0.614702287962867	0	lncRNA	ENST00000500163	XR_110891	XR_110891	NA	Hs.614291	ARAP1-AS2	NA	ENST00000500163	THC2629011	NA	"PREDICTED: Homo sapiens ARAP1 antisense RNA 2 (non-protein coding) (ARAP1-AS2), miscRNA [XR_110891]"	chr11:72416292-72416351	hs|11q13.4	Agilent_HUMAN_G3V2	ENST00000500163	ENST00000500163	chr11	 72416292	 72416351	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006015	0.8789847	A	0.88858026	A	0.993370934483947	0	lncRNA	ENST00000419576	NA	NA	NA	NA	XLOC_007389	NA	ENST00000419576	NA	NA	"BROAD Institute lincRNA (XLOC_007389), lincRNA [TCONS_00015687]"	chr9:70923273-70923332	hs|9q21.11	Agilent_HUMAN_G3V2	ENST00000419576	ENST00000419576	chr9	 70923273	 70923332	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13746_PI429285431	5.7105536	P	5.8741565	P	0.892792677720702	0	lncRNA	15389-1_{1..517}	lnc-ROBO2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ROBO2-1:1	chr3	 78114558	 78115074	+	lnc-ROBO2-1	lnc-ROBO2-1:1	XLOC_002713	linc-CADM2-11	NA	NA	NA	inter
LNCA_21_P0011213	0.8744351	A	0.8790788	A	0.996786407116426	0	lncRNA	ENST00000434601	XR_132734	XR_132734	NA	NA	XLOC_l2_003897	NA	ENST00000434601	THC2639268	NA	"PREDICTED: Homo sapiens hypothetical LOC100652865 (LOC100652865), miscRNA [XR_132734]"	chr13:21877734-21877675	hs|13q12.11	Agilent_HUMAN_G3V2	ENST00000434601	ENST00000434601	chr13	 21877675	 21877734	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37465_PI429285431	0.90229917	A	0.92826635	A	0.982161938300035	0	lncRNA	38564-1_{1..251}	n345918|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1467|NULL|-1.4154300|-0.2879344	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345918|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1467|NULL|-1.4154300|-0.2879344	chr8	127889399	127889649	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45370_PI429285431	6.9239354	P	6.744137	P	1.13272558889347	0	lncRNA	49805-1_{1..1644}	"gi|379643061|ref|NR_046422.1| Homo sapiens idnK, gluconokinase homolog (E. coli) (IDNK), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379643061|ref|NR_046422.1| Homo sapiens idnK, gluconokinase homolog (E. coli) (IDNK), transcript variant 4, non-coding RNA"	Chr9	 86237964	 86239607	+	414328	NR_046422.1	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.30"	NA	inter
CUST_24174_PI429285431	1.2976321	A	0.89739954	A	1.31972063036047	0	lncRNA	25725-1_{1..504}	lnc-CTC-203F4.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTC-203F4.1.1-1:1	chr5	134793994	134794497	+	lnc-CTC-203F4.1.1-1	lnc-CTC-203F4.1.1-1:1	ENSG00000249639.1	CTB-138E5.1	TIFAB	NA	chr5:134784558-134788089	inter
CUST_49312_PI429285431	1.0036986	A	1.1518553	A	0.902402706619554	0	lncRNA	53128-1_{1..1972}	hg19_lincRNAsTranscripts_TCONS_l2_00022834 range=chr5:34173806-34176061 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022834 range=chr5:34173806-34176061 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 34173806	 34175777	-	NA	NA	NA	NA	NA	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-12.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10"	NA	inter
CUST_35637_PI429285431	9.162856	P	8.548054	P	1.5313478156864	0	lncRNA	37053-1_{1..1518}	n342783|D90228|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5286|NULL|7.8526200|-0.2575069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342783|D90228|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5286|NULL|7.8526200|-0.2575069	chr11	107992257	107993774	+	NA	NA	NA	NA	ACAT1	NA	chr11:107992258-108018895	inner
CUST_1135_PI429285431	4.904616	P	5.350405	P	0.734182687360468	0	lncRNA	1124-1_{1..739}	"transcript_id ""ENST00000440668.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440668.1"" | genecode_v17"	chr2	151468895	151469633	+	ENSG00000224048.1	ENST00000440668.1	AC104777.4	AC104777.4-005	NA	NA	NA	inter
CUST_36825_PI429285431	2.613772	A	2.2410407	A	1.29480182130774	0	lncRNA	37993-1_{1..263}	n345301|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_850|NULL|-1.3987900|-0.3310480	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345301|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_850|NULL|-1.3987900|-0.3310480	chr15	 47583744	 47584006	-	NA	NA	NA	NA	SEMA6D	NA	chr15:47573744-47594007	inner
CUST_4280_PI429285431	1.3357927	A	2.006051	A	0.628394169548839	0	lncRNA	4236-1_{1..769}	"transcript_id ""ENST00000552378.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552378.1"" | genecode_v17"	chr12	 60486645	 60487413	+	ENSG00000257294.1	ENST00000552378.1	RP11-316A16.1	RP11-316A16.1-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60"	NA	inter
CUST_23099_PI429285431	2.0846097	A	2.2237391	A	0.908066966595696	0	lncRNA	24670-1_{1..853}	lnc-LIN28B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIN28B-1:1	chr6	105616606	105617458	+	lnc-LIN28B-1	lnc-LIN28B-1:1	ENSG00000203808.6	BVES-AS1	POPDC3	NA	chr6:105606606-105626776	inner
CUST_26222_PI429285431	6.0597973	P	5.476559	P	1.49820838351308	0	lncRNA	27729-1_{1..380}	lnc-TBCD-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBCD-2:2	chr17	 80939335	 80939714	+	lnc-TBCD-2	lnc-TBCD-2:2	ENSG00000262339.1	RP11-1197K16.2	B3GNTL1	NA	chr17:80929335-80949610	inner
CUST_23058_PI429285431	0.8971455	A	0.94206643	A	0.969342942400911	0	lncRNA	24629-1_{1..746}	lnc-AGBL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AGBL1-3:1	chr15	 86245375	 86246120	+	lnc-AGBL1-3	lnc-AGBL1-3:1	ENSG00000259453.1	RP11-815J21.1	AKAP13	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr15:86235375-86256002"	NA	inner
CUST_16960_PI429285431	1.6408118	A	0.90068936	A	1.6703175909262	0	lncRNA	18672-1_{1..565}	lnc-TMEM74B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM74B-1:1	chr20	  1168488	  1169052	-	lnc-TMEM74B-1	lnc-TMEM74B-1:1	XLOC_013623	linc-C20orf46	C20orf46	NA	chr20:1161215-1165117	inter
CUST_6066_PI429285431	4.732457	P	4.415397	P	1.24578922540946	0	lncRNA	5990-2_{3001..3372}	"transcript_id ""ENST00000577439.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577439.1"" | genecode_v17"	chr18	  5243989	  5244360	+	ENSG00000263753.1	ENST00000577439.1	LINC00667	LINC00667-003	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.91;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.71;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
LNCA_21_P0001721	2.6594794	A	3.1019263	P	0.735885442398797	0	lncRNA	TCONS_00002304	NA	NA	NA	NA	XLOC_000730	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000730), lincRNA [TCONS_00002304]"	chr1:20700096-20700037	hs|1p36.12	Agilent_HUMAN_G3V2	TCONS_00002304	TCONS_00002304	chr1	 20700037	 20700096	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002961	4.9776435	P	4.2654247	P	1.63832184575835	0	lncRNA	TCONS_00006032	NA	NA	NA	NA	XLOC_002673	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002673), lincRNA [TCONS_00006032]"	chr3:57957643-57957702	hs|3p14.3	Agilent_HUMAN_G3V2	TCONS_00006032	TCONS_00006032	chr3	 57957643	 57957702	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6933_PI429285431	1.7077456	A	1.8825997	A	0.885857101455038	0	lncRNA	6884-1_{1..3000}	"transcript_id ""ENST00000447720.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447720.1"" | genecode_v17"	chr22	 21655279	 21658278	-	ENSG00000206142.5	ENST00000447720.1	FAM230C	FAM230C-001	RIMBP3B	NA	chr22:21645279-21689331	inter
CUST_42027_PI429285431	2.4465413	A	1.5713654	A	1.83423171072399	0	lncRNA	43899-1_{1..82}	ENST00000582373 ncrna:miRNA chromosome:GRCh37:2:29304136:29304217:-1 gene:ENSG00000263957 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582373 ncrna:miRNA chromosome:GRCh37:2:29304136:29304217:-1 gene:ENSG00000263957 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 29304136	 29304217	-	ENSG00000263957	ENST00000582373	NA	NA	C2orf71	NA	chr2:29294136-29297127	inter
LNCA_21_P0006772	0.8935934	A	0.8770662	A	1.01152165083985	0	lncRNA	ENST00000455498	NA	NA	NA	NA	XLOC_008862	NA	ENST00000455498	THC2658956	NA	"BROAD Institute lincRNA (XLOC_008862), lincRNA [TCONS_00017999]"	chr10:80456557-80456498	hs|10q22.3	Agilent_HUMAN_G3V2	ENST00000455498	ENST00000455498	chr10	 80456498	 80456557	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28054_PI429285431	1.9893725	A	1.6024308	A	1.30761850597677	0	lncRNA	29672-1_{1..756}	n325320|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326186|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326186|-1.2676800|-0.2472202	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325320|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326186|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326186|-1.2676800|-0.2472202	chr2	 45010506	 45011261	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41081_PI429285431	1.6250787	A	1.7526547	A	0.91536815017728	0	lncRNA	41765-1_{1..87}	ENST00000385242 ncrna:miRNA chromosome:GRCh37:19:54214256:54214342:1 gene:ENSG00000207977 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385242 ncrna:miRNA chromosome:GRCh37:19:54214256:54214342:1 gene:ENSG00000207977 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54214256	 54214342	+	ENSG00000207977	ENST00000385242	NA	NA	NA	NA	NA	inter
CUST_41578_PI429285431	1.2154038	A	0.9571177	A	1.19605696260786	0	lncRNA	42898-1_{1..78}	ENST00000390751 ncrna:miRNA chromosome:GRCh37:14:101498324:101498401:1 gene:ENSG00000212040 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390751 ncrna:miRNA chromosome:GRCh37:14:101498324:101498401:1 gene:ENSG00000212040 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101498324	101498401	+	ENSG00000212040	ENST00000390751	NA	NA	NA	NA	NA	inter
CUST_46415_PI429285431	4.7985415	P	5.3267884	P	0.693396807841071	0	lncRNA	50628-2_{3001..4292}	"gi|301601679|ref|NR_036432.1| Homo sapiens hect domain and RLD 2 pseudogene 3 (HERC2P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301601679|ref|NR_036432.1| Homo sapiens hect domain and RLD 2 pseudogene 3 (HERC2P3), non-coding RNA"	Chr15	 20616649	 20617940	-	283755	NR_036432.1	NA	NA	NA	NA	NA	inter
CUST_39259_PI429285431	5.9493003	P	6.786873	P	0.559584264645191	0	lncRNA	40230-1_{1..2036}	n386148|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bra.1||-0.5063630|-0.1124116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386148|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bra.1||-0.5063630|-0.1124116	chr16	   767618	   769653	+	NA	NA	NA	NA	HAGHL	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10chr16:777266-779654"	NA	inter
CUST_6664_PI429285431	0.8889661	A	0.88105744	A	1.00549691829849	0	lncRNA	6610-1_{1..659}	"transcript_id ""ENST00000422494.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422494.1"" | genecode_v17"	chr20	 22568160	 22568818	-	ENSG00000237396.1	ENST00000422494.1	RP4-788L20.3	RP4-788L20.3-001	FOXA2	NA	chr20:22561642-22566101	inter
LNCA_21_P0009511	0.8725543	A	0.87638533	A	0.99734805499229	0	lncRNA	THC2778958	NA	NA	NA	NA	XLOC_012737	NA	NA	THC2778958	NA	"BROAD Institute lincRNA (XLOC_012737), lincRNA [TCONS_00026388]"	chr18:000014445-000014386	hs|18p11.32	Agilent_HUMAN_G3V2	THC2778958	THC2778958	chr18	    14386	    14445	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8869_PI429285431	4.491216	P	4.7553396	P	0.832704427545137	0	lncRNA	10408-1_{1..3000}	lnc-KCNG3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNG3-2:1	chr2	 42839889	 42842888	-	lnc-KCNG3-2	lnc-KCNG3-2:1	ENSG00000251140	ENST00000509845	MTA3	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30chr2:42829889-42852116"	NA	inner
CUST_2326_PI429285431	0.8899467	A	0.91912633	A	0.979977390732982	0	lncRNA	2318-1_{1..1223}	"transcript_id ""ENST00000503877.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000503877.1"" | genecode_v17"	chr5	117618270	117619492	+	ENSG00000250427.1	ENST00000503877.1	CTD-3179P9.2	CTD-3179P9.2-001	NA	NA	NA	inter
CUST_44250_PI429285431	0.8783985	A	0.87985724	A	0.998989389492946	0	lncRNA	48896-1_{1..914}	"gi|397139047|ref|XR_158773.1| PREDICTED: Homo sapiens uncharacterized LOC100507274, transcript variant 2 (LOC100507274), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|397139047|ref|XR_158773.1| PREDICTED: Homo sapiens uncharacterized LOC100507274, transcript variant 2 (LOC100507274), misc_RNA"	Chr3	137490180	137491093	+	100507274	XR_158773.2	NA	NA	NA	NA	NA	inter
CUST_5814_PI429285431	4.366965	P	3.916859	P	1.36614062833865	0	lncRNA	5741-1_{1..306}	"transcript_id ""ENST00000580792.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580792.1"" | genecode_v17"	chr17	 32496391	 32496696	-	ENSG00000261156.2	ENST00000580792.1	RP11-215E13.1	RP11-215E13.1-002	NA	NA	NA	inter
CUST_37719_PI429285431	2.7110147	A	1.4304521	A	2.42933693951364	0	lncRNA	38818-1_{1..693}	n346222|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1772|NULL|-1.5562900|-0.3209122	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346222|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1772|NULL|-1.5562900|-0.3209122	chr13	 51729391	 51730083	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32356_PI429285431	1.0964468	A	1.0099201	A	1.0618107847369	0	lncRNA	34035-1_{1..3000}	n338940|AK127841|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1367|NULL|-0.8383220|-0.2248273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338940|AK127841|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1367|NULL|-0.8383220|-0.2248273	chr2	113597904	113600903	+	NA	NA	NA	NA	IL1B	NA	chr2:113587904-113594356	inter
CUST_2612_PI429285431	3.4566169	P	1.875183	A	2.99267144696256	0	lncRNA	2599-1_{1..465}	"transcript_id ""ENST00000452675.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452675.1"" | genecode_v17"	chr6	113944981	113945445	-	ENSG00000230943.1	ENST00000452675.1	RP11-367G18.1	RP11-367G18.1-002	NA	NA	NA	inter
CUST_34055_PI429285431	3.705011	P	3.3752363	P	1.25681708702316	0	lncRNA	35585-1_{1..1612}	n340873|BC044235|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3338|NULL|1.0992600|-0.1914159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340873|BC044235|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3338|NULL|1.0992600|-0.1914159	chr6	 21898950	 21900561	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26532_PI429285431	1.6438309	A	1.2924376	A	1.27579214407765	0	lncRNA	28039-1_{1..241}	lnc-DOLPP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DOLPP1-1:1	chr9	131862498	131862738	+	lnc-DOLPP1-1	lnc-DOLPP1-1:1	ENSG00000234055.1	RP11-247A12.1	CRAT	"hg19_refFlat_CRAT:range=chr9:131857676-1318703205'pad=0,hg19_refFlat_CRAT:range=chr9:131857676-1318703205'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CRAT:range=chr9:131857676-1318727885'pad=0,hg19_refFlat_CRAT:range=chr9:131857676-1318727885'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70chr9:131857073-131872545"	NA	inner
CUST_18177_PI429285431	0.9101183	A	0.90768	A	1.00169152979562	0	lncRNA	19913-1_{1..919}	lnc-KIAA1210-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-KIAA1210-1:1	chrX	118390884	118391802	-	lnc-KIAA1210-1	lnc-KIAA1210-1:1	ENSG00000214992	AKAP16BP	NA	NA	NA	inter
CUST_47192_PI429285431	0.8987122	A	0.9074934	A	0.993931822192051	0	lncRNA	51267-1_{1..1688}	"gi|312032427|ref|NR_037160.1| Homo sapiens ZNF582 antisense RNA 1 (head to head) (ZNF582-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|312032427|ref|NR_037160.1| Homo sapiens ZNF582 antisense RNA 1 (head to head) (ZNF582-AS1), transcript variant 2, non-coding RNA"	Chr19	 56905045	 56906732	+	386758	NR_037160.1	NA	NA	NA	NA	NA	inter
CUST_41104_PI429285431	0.8991374	A	0.91703093	A	0.98767374846642	0	lncRNA	41846-1_{1..110}	ENST00000385006 ncrna:miRNA chromosome:GRCh37:5:168195151:168195260:-1 gene:ENSG00000207739 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385006 ncrna:miRNA chromosome:GRCh37:5:168195151:168195260:-1 gene:ENSG00000207739 gene_biotype:miRNA transcript_biotype:miRNA	chr5	168195151	168195260	-	ENSG00000207739	ENST00000385006	NA	NA	SLIT3	NA	chr5:168185151-168205260	inner
CUST_37632_PI429285431	0.8970184	A	0.9047727	A	0.99463954759331	0	lncRNA	38727-1_{1..2587}	n346109|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1659|NULL|-1.2878100|-0.1777803	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346109|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1659|NULL|-1.2878100|-0.1777803	chr9	 38540574	 38543160	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32435_PI429285431	0.9096056	A	0.9304717	A	0.985640812390982	0	lncRNA	34109-1_{1..3000}	n339031|AK127194|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1460|NULL|-0.2709470|-0.3931146	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339031|AK127194|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1460|NULL|-0.2709470|-0.3931146	chr2	178487978	178490977	-	NA	NA	NA	NA	PDE11A	NA	chr2:178487977-178501033	inner
CUST_31916_PI429285431	1.8805639	A	0.920416	A	1.94550933134675	0	lncRNA	33645-2_{3001..3738}	n338471|AK126062|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|868|NULL|-1.1303100|-0.2869064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338471|AK126062|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|868|NULL|-1.1303100|-0.2869064	chr14	 97462200	 97462937	+	NA	NA	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50"	NA	inter
CUST_7130_PI429285431	2.186807	A	1.9347826	A	1.19087699024854	0	lncRNA	7067-1_{1..559}	"transcript_id ""ENST00000426699.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426699.1"" | genecode_v17"	chrY	  3904538	  3905096	+	ENSG00000229308.1	ENST00000426699.1	AC010084.1	AC010084.1-001	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
LNCA_21_P0003872	1.0868939	A	0.9173403	A	1.12471042193007	0	lncRNA	TCONS_00008970	NA	NA	NA	NA	XLOC_003825	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003825), lincRNA [TCONS_00008970]"	chr4:188133571-188133630	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008970	TCONS_00008970	chr4	188133571	188133630	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006842	1.2160131	A	0.915679	A	1.23142955536591	0	lncRNA	TCONS_00018138	NA	NA	NA	NA	XLOC_008413	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008413), lincRNA [TCONS_00018138]"	chr10:23875110-23875169	hs|10p12.2	Agilent_HUMAN_G3V2	TCONS_00018138	TCONS_00018138	chr10	 23875110	 23875169	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009654	0.8916223	A	0.90865815	A	0.988261093573104	0	lncRNA	TCONS_00026793	NA	NA	NA	NA	XLOC_013100	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013100), lincRNA [TCONS_00026793]"	chr19:46713508-46715413	hs|19q13.32	Agilent_HUMAN_G3V2	TCONS_00026793	TCONS_00026793	chr19	 46713508	 46715413	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34688_PI429285431	3.0176563	P	2.5909512	A	1.3441602074861	0	lncRNA	36140-1_{1..1422}	n341593|BC034804|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4064|NULL|-1.0824400|-0.3839718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341593|BC034804|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4064|NULL|-1.0824400|-0.3839718	chr8	120075180	120076601	-	NA	NA	NA	NA	COLEC10	NA	chr8:120079424-120091021	inner
CUST_15846_PI429285431	0.903103	A	0.9126852	A	0.993380133584767	0	lncRNA	17539-1_{1..2232}	lnc-ANO1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANO1-2:1	chr11	 69918341	 69920572	+	lnc-ANO1-2	lnc-ANO1-2:1	XLOC_009196	linc-ANO1-2	ANO1	NA	chr11:69924408-69930017	inter
CUST_40252_PI429285431	1.2453234	A	1.0472933	A	1.14713095740722	0	lncRNA	41066-2_{3001..5631}	n408177|NR_028319|lncRNA|Homosapiens||RefGeneNoncode|NR_028319||9.0967800|-0.1742680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408177|NR_028319|lncRNA|Homosapiens||RefGeneNoncode|NR_028319||9.0967800|-0.1742680	chrY	 16639453	 16642083	+	NA	NA	NA	NA	NLGN4Y	NA	chrY:16634488-16955848	inner
CUST_35729_PI429285431	0.9023124	A	1.0714886	A	0.8893503682913	0	lncRNA	37146-1_{1..1241}	n342896|L08443|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5404|NULL|-1.0990400|-0.2990417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342896|L08443|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5404|NULL|-1.0990400|-0.2990417	chr6	 72071629	 72072869	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7723_PI429285431	1.4380225	A	0.90548205	A	1.44647405872703	0	lncRNA	9354-1_{1..900}	lnc-WRNIP1-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WRNIP1-2:8	chr6	  2398811	  2399710	+	lnc-WRNIP1-2	lnc-WRNIP1-2:8	ENSG00000250903	RP1-80B9.2	NA	NA	NA	inter
CUST_26769_PI429285431	0.88947046	A	0.88856906	A	1.00062499809853	0	lncRNA	28268-1_{1..2445}	n323821|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057981|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057981|-0.1010910|-0.3587298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323821|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057981|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057981|-0.1010910|-0.3587298	chrX	114946546	114948990	-	NA	NA	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-24.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00"	NA	inter
CUST_44523_PI429285431	6.6265397	P	7.5014415	P	0.545290981419661	0	lncRNA	49118-1_{1..3000}	"gi|315221154|ref|NR_037665.1| Homo sapiens uncharacterized LOC100506548 (LOC100506548), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315221154|ref|NR_037665.1| Homo sapiens uncharacterized LOC100506548 (LOC100506548), non-coding RNA"	Chr5	 40825364	 40828363	-	100506548	NR_037665.1	NA	NA	NA	"hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.16;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30"	NA	inter
CUST_720_PI429285431	0.88312656	A	0.881615	A	1.00104828261679	0	lncRNA	713-1_{1..545}	"transcript_id ""ENST00000585810.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585810.1"" | genecode_v17"	chr2	  6789284	  6789828	-	ENSG00000236172.2	ENST00000585810.1	AC097517.2	AC097517.2-053	NA	NA	NA	inter
CUST_39086_PI429285431	1.0008814	A	2.6934013	A	0.309386060023708	0	lncRNA	40062-1_{1..1184}	n385624|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004arq.1||-0.9872180|-0.2308074	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385624|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004arq.1||-0.9872180|-0.2308074	chr9	 94919968	 94921151	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37118_PI429285431	0.8982129	A	1.0306886	A	0.912264637823568	0	lncRNA	38241-2_{3001..3337}	n345559|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1108|NULL|-1.2768600|-0.4000273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345559|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1108|NULL|-1.2768600|-0.4000273	chr2	187381237	187381573	+	NA	NA	NA	NA	ZC3H15	NA	chr2:187368237-187374088	inter
CUST_22126_PI429285431	1.0565455	A	0.90026814	A	1.11440787659131	0	lncRNA	23729-1_{1..2957}	lnc-AKAP9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AKAP9-2:1	chr7	 91808165	 91811121	+	lnc-AKAP9-2	lnc-AKAP9-2:1	ENSG00000188693.7	CTB-161K23.1	NA	"hg19_refFlat_LRRD1:range=chr7:91774202-917945165'pad=0,hg19_refFlat_LRRD1:range=chr7:91774202-917945165'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50"	NA	inter
LNCA_21_P0007750	6.340479	P	6.523286	P	0.880987222429286	0	lncRNA	TCONS_00020899	NA	NA	NA	NA	XLOC_010176	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010176), lincRNA [TCONS_00020899]"	chr12:103325301-103325242	hs|12q23.2	Agilent_HUMAN_G3V2	TCONS_00020899	TCONS_00020899	chr12	103325242	103325301	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007767	2.9556534	P	3.7265334	P	0.586059886900968	0	lncRNA	TCONS_00020937	NA	NA	NA	NA	XLOC_010208	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010208), lincRNA [TCONS_00020937]"	chr12:115752001-115748657	hs|12q24.21	Agilent_HUMAN_G3V2	TCONS_00020937	TCONS_00020937	chr12	115748657	115752001	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21166_PI429285431	3.1947572	A	2.8333952	A	1.28463810902065	0	lncRNA	22790-1_{1..774}	lnc-CCDC82-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC82-3:2	chr11	 97813606	 97814379	-	lnc-CCDC82-3	lnc-CCDC82-3:2	ENSG00000255502.1	RP11-379J13.2	NA	NA	NA	inter
LNCA_21_P0014167	2.551089	A	3.2762702	P	0.604921062799714	0	lncRNA	ENST00000379433	XR_108674	XR_108674	NA	Hs.673866	NEDD9	"neural precursor cell expressed, developmentally down-regulated 9"	ENST00000379433	THC2619238	GO:0005515|GO:0030054|GO:0005794|GO:0005819|GO:0005634|GO:0030027|GO:0007165|GO:0000922|GO:0005737|GO:0007049|GO:0007067|GO:0007229|GO:0007010|GO:0005856|GO:0007155|GO:0051017|GO:0005925|GO:0005938|GO:0040008|GO:0051301	"PREDICTED: Homo sapiens B2 RNA (LOC100506431), miscRNA [XR_108674]"	chr6:11199029-11198970	hs|6p24.2	Agilent_HUMAN_G3V2	ENST00000379433	ENST00000379433	chr6	 11198970	 11199029	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19490_PI429285431	0.93915343	A	1.7948635	A	0.552593282688038	0	lncRNA	21146-1_{1..288}	lnc-ETS2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ETS2-3:1	chr21	 40275664	 40275951	+	lnc-ETS2-3	lnc-ETS2-3:1	ENSG00000229925.1	AP001043.1	NA	NA	NA	inter
CUST_9985_PI429285431	3.0650988	P	4.10689	P	0.485724041102468	0	lncRNA	11509-1_{1..1950}	lnc-TMPRSS15-9:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMPRSS15-9:4	chr21	 22175313	 22177262	-	lnc-TMPRSS15-9	lnc-TMPRSS15-9:4	XLOC_014019	linc-TMPRSS15-5	NA	NA	NA	inter
CUST_13209_PI429285431	3.8667345	P	3.8027852	P	1.04532336421848	0	lncRNA	14837-1_{1..642}	lnc-IGFBP7-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGFBP7-4:1	chr4	 59431234	 59431875	-	lnc-IGFBP7-4	lnc-IGFBP7-4:1	XLOC_003961	linc-IGFBP7-6	NA	NA	NA	inter
CUST_13037_PI429285431	3.7187796	P	4.1025057	P	0.766455480173695	0	lncRNA	14662-1_{1..469}	lnc-C21orf67-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C21orf67-1:1	chr21	 46398745	 46399213	-	lnc-C21orf67-1	lnc-C21orf67-1:1	XLOC_014119	linc-ITGB2-1	C21orf70	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30chr21:46388745-46396888"	NA	inter
CUST_365_PI429285431	3.0526907	A	3.4947786	P	0.736068582798307	0	lncRNA	357-1_{1..332}	"transcript_id ""ENST00000420156.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420156.2"" | genecode_v17"	chr1	114749049	114749380	-	ENSG00000232895.2	ENST00000420156.2	RP4-543J13.1	RP4-543J13.1-001	NA	NA	NA	inter
CUST_25885_PI429285431	5.858153	P	5.9872394	P	0.914410325730931	0	lncRNA	27405-1_{1..649}	lnc-ATP12A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ATP12A-1:3	chr13	 25171525	 25172173	+	lnc-ATP12A-1	lnc-ATP12A-1:3	ENSG00000205822.5	TPTE2P6	NA	NA	NA	inter
CUST_1103_PI429285431	0.87887585	A	0.87792933	A	1.00065629293537	0	lncRNA	1092-1_{1..604}	"transcript_id ""ENST00000414256.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414256.1"" | genecode_v17"	chr2	145425586	145426189	+	ENSG00000226674.3	ENST00000414256.1	AC074093.1	AC074093.1-006	NA	NA	NA	inter
CUST_8763_PI429285431	7.4420385	P	7.4115753	P	1.02133999038588	0	lncRNA	10306-1_{1..2866}	lnc-AL137798.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AL137798.1-1:1	chr1	 16949246	 16952111	+	lnc-AL137798.1-1	lnc-AL137798.1-1:1	ENSG00000245549	AL137798.2	NBPF1	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-57.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CROCC:range=chr1:17248514-172989415'pad=0,hg19_refFlat_CROCC:range=chr1:17248514-172989415'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr1:16939246-16939982"	NA	inter
CUST_27133_PI429285431	1.9434788	A	0.89582574	A	2.06716430004924	0	lncRNA	28669-1_{1..1116}	n324249|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324169|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324169|-0.0662261|-0.3243518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324249|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324169|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324169|-0.0662261|-0.3243518	chr7	  6621772	  6622887	+	NA	NA	NA	NA	C7orf26	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20chr7:6629915-6637705"	NA	inner
CUST_52214_PI429285431	4.5309753	P	4.547429	P	0.988659952839593	0	lncRNA	55730-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_00029986 range=chr6_qbl_hap6:2318135-2323435 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00029986 range=chr6_qbl_hap6:2318135-2323435 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6_qbl_hap6	  2318135	  2321134	+	NA	NA	NA	NA	NA	"hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.71;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20"	NA	Unknown
CUST_52084_PI429285431	4.4905324	P	2.5379891	A	3.87056264707917	0	lncRNA	55612-2_{3001..5148}	hg19_lincRNAsTranscripts_TCONS_l2_00017550 range=chr22:17082289-17134690 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017550 range=chr22:17082289-17134690 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17085289	 17087436	+	NA	NA	NA	NA	CCT8L2	"hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.10;hg19_refFlat_SLC25A15:range=chr13:41367363-413838035'pad=0,hg19_refFlat_SLC25A15:range=chr13:41367363-413838035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60chr22:17072289-17073700"	NA	inter
CUST_31107_PI429285431	1.3446364	A	1.4938997	A	0.901710796046777	0	lncRNA	32900-1_{1..340}	n337396|DQ656049|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393162|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393162|0.3040200|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337396|DQ656049|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393162|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393162|0.3040200|-1.0000000	chrX	153297824	153298163	-	NA	NA	NA	NA	MECP2	NA	chrX:153287824-153363188	inner
CUST_38167_PI429285431	4.531374	P	5.021779	P	0.711825242885388	0	lncRNA	39238-1_{1..1361}	n381419|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001iur.1||4.3362900|-0.1584026	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381419|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001iur.1||4.3362900|-0.1584026	chr10	 29743270	 29744630	+	NA	NA	NA	NA	SVIL	NA	chr10:29746277-29754631	inter
LNCA_21_P0009140	4.6714597	P	5.556361	P	0.541524569155443	0	lncRNA	THC2668316	NA	NA	NA	NA	XLOC_012044	NA	NA	THC2668316	NA	"BROAD Institute lincRNA (XLOC_012044), lincRNA [TCONS_00025084]"	chr16:086256193-086256134	hs|16q24.1	Agilent_HUMAN_G3V2	THC2668316	THC2668316	chr16	 86256134	 86256193	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48848_PI429285431	3.5644755	P	3.3467212	P	1.16292197178775	0	lncRNA	52684-1_{1..1872}	hg19_lincRNAsTranscripts_TCONS_l2_00019529 range=chr3:129101710-129112997 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019529 range=chr3:129101710-129112997 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	129101710	129103581	-	NA	NA	NA	NA	C3orf25	"hg19_refFlat_IFT122:range=chr3:129159174-1292391085'pad=0,hg19_refFlat_IFT122:range=chr3:129159174-1292391085'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30chr3:129120164-129122997"	NA	inter
CUST_31284_PI429285431	0.89044315	A	0.9061445	A	0.989175662864782	0	lncRNA	33072-1_{1..1135}	n337745|BC039389|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|127|NULL|-1.0153800|-0.2975842	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337745|BC039389|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|127|NULL|-1.0153800|-0.2975842	chr15	 45671399	 45672533	-	NA	NA	NA	NA	SPATA5L1	NA	chr15:45694519-45704682	inter
CUST_9750_PI429285431	2.6140823	A	2.1064768	A	1.42168860156908	0	lncRNA	11267-1_{1..656}	lnc-HAS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HAS2-1:1	chr8	122655149	122655804	-	lnc-HAS2-1	lnc-HAS2-1:1	XLOC_007195	linc-HAS2-5	HAS2	NA	chr8:122645149-122653630	inter
CUST_26839_PI429285431	0.92911255	A	1.1059475	A	0.884641636033104	0	lncRNA	28353-1_{1..1497}	n323910|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055788|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055788|-0.3156310|-0.3770337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323910|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055788|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055788|-0.3156310|-0.3770337	chrX	 13194087	 13195583	-	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	inter
CUST_937_PI429285431	1.0070342	A	1.1774074	A	0.888612782831626	0	lncRNA	927-1_{1..710}	"transcript_id ""ENST00000496886.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000496886.1"" | genecode_v17"	chr2	 74213653	 74214362	+	ENSG00000255989.1	ENST00000496886.1	RP11-711M9.1	RP11-711M9.1-001	NA	NA	NA	inter
CUST_22554_PI429285431	1.5947719	A	0.91593033	A	1.60085381340529	0	lncRNA	24141-1_{1..556}	lnc-MTO1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTO1-1:1	chr6	 74280010	 74280565	+	lnc-MTO1-1	lnc-MTO1-1:1	ENSG00000229862.1	RP11-505P4.7	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10"	NA	inter
CUST_42458_PI429285431	6.705717	P	7.1105595	P	0.755318746942471	0	lncRNA	45195-1_{1..132}	ENST00000383865 ncrna:snoRNA chromosome:GRCh37:5:78516765:78516896:1 gene:ENSG00000206592 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000383865 ncrna:snoRNA chromosome:GRCh37:5:78516765:78516896:1 gene:ENSG00000206592 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	 78516765	 78516896	+	ENSG00000206592	ENST00000383865	NA	NA	NA	NA	NA	inter
CUST_43986_PI429285431	0.9023831	A	0.9228188	A	0.985934903019136	0	lncRNA	48685-2_{3001..4801}	"gi|383209664|ref|NR_033870.2| Homo sapiens uncharacterized LOC401014 (DKFZp686O1327), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|383209664|ref|NR_033870.2| Homo sapiens uncharacterized LOC401014 (DKFZp686O1327), non-coding RNA"	Chr2	145428534	145430334	+	401014	NR_033870.2	NA	NA	NA	NA	NA	inter
CUST_20593_PI429285431	3.1141856	A	3.3053284	A	0.875911611803351	0	lncRNA	22232-1_{1..747}	lnc-ACOXL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ACOXL-1:1	chr2	111369515	111370261	+	lnc-ACOXL-1	lnc-ACOXL-1:1	ENSG00000231536.1	AC123886.2	NA	NA	NA	inter
LNCA_21_P0014604	2.593594	A	0.9275734	A	3.17338068461048	0	lncRNA	XR_110494	XR_110494	XR_110494	NA	Hs.655156	LOC100506528	uncharacterized LOC100506528	NA	THC2576778	NA	"PREDICTED: Homo sapiens hypothetical LOC100506528 (LOC100506528), miscRNA [XR_110494]"	chr1:120533401-120533342	hs|1p12	Agilent_HUMAN_G3V2	XR_110494	XR_110494	chr1	120533342	120533401	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013649	1.5472251	A	1.9699605	A	0.746008823848724	0	lncRNA	TCONS_l2_00029341	NA	NA	NA	NA	XLOC_l2_015209	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015209), lincRNA [TCONS_l2_00029341]"	chr9:67917494-67917435	hs|9q13	Agilent_HUMAN_G3V2	TCONS_l2_00029341	TCONS_l2_00029341	chr9	 67917435	 67917494	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_349_PI429201921	1.2252759	A	1.3932582	A	0.890086653396169	0	lncRNA	227-1_{1..3000}	TC03002819.hg.1	 TCONS_l2_00019181-XLOC_l2_010118 // Broad TUCP // linc-XPC-1 chr3:-:14390736-14398336 // chr3 // 100 // 100 // 0 // --- // 0///TCONS_l2_00020086-XLOC_l2_010118 // Broad TUCP // linc-XPC-1 chr3:-:14389950-14394068 // chr3 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr3:-:14389950-14394068	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00020086-XLOC_l2_010118	linc-XPC-1	chr3	 14389950	 14394068	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36356_PI429285431	0.9000378	A	0.89747226	A	1.00177987892508	0	lncRNA	37579-2_{3001..3141}	n344876|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_425|NULL|-1.4343700|-0.3582681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344876|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_425|NULL|-1.4343700|-0.3582681	chr6	119682999	119683139	-	NA	NA	NA	NA	MAN1A1	NA	chr6:119669999-119670926	inter
LNCA_21_P0001567	0.8978175	A	0.9169603	A	0.9868188643217	0	lncRNA	TCONS_00001623	NA	NA	NA	NA	XLOC_000951	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000951), lincRNA [TCONS_00001623]"	chr1:109625904-109625845	hs|1p13.3	Agilent_HUMAN_G3V2	TCONS_00001623	TCONS_00001623	chr1	109625845	109625904	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005821	0.89472044	A	0.9126501	A	0.987649014059847	0	lncRNA	TCONS_00014979	NA	NA	NA	NA	XLOC_007058	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007058), lincRNA [TCONS_00014979]"	chr8:38412596-38412537	hs|8p11.22	Agilent_HUMAN_G3V2	TCONS_00014979	TCONS_00014979	chr8	 38412537	 38412596	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003476	8.574686	P	8.204118	P	1.29286173994109	0	lncRNA	ENST00000507156	NA	NA	NA	NA	XLOC_003976	NA	ENST00000507156	THC2667746	NA	"BROAD Institute lincRNA (XLOC_003976), lincRNA [TCONS_00007777]"	chr4:72688816-72688588	hs|4q13.3	Agilent_HUMAN_G3V2	ENST00000507156	ENST00000507156	chr4	 72688588	 72688816	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38188_PI429285431	1.4494177	A	1.8704598	A	0.746884933018249	0	lncRNA	39256-1_{1..1847}	n381468|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jwk.2||-0.3342220|-0.3364668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381468|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jwk.2||-0.3342220|-0.3364668	chr10	 76045372	 76047218	+	NA	NA	NA	NA	ADK	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.56;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.51chr10:76035372-76057219"	NA	inner
CUST_48199_PI429285431	1.6472583	A	0.89291996	A	1.68685777501788	0	lncRNA	52062-1_{1..2595}	"gi|397138578|ref|XR_159534.1| PREDICTED: Homo sapiens inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1-like (LOC100508782), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138578|ref|XR_159534.1| PREDICTED: Homo sapiens inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1-like (LOC100508782), misc_RNA"	NA	NA	NA	NA	NA	XR_159534.1	NA	NA	NA	NA	NA	Unknown
CUST_26312_PI429285431	0.89002454	A	0.8952987	A	0.996350905054583	0	lncRNA	27819-1_{1..846}	lnc-WNT2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WNT2-1:2	chr7	116785450	116786295	-	lnc-WNT2-1	lnc-WNT2-1:2	ENSG00000226367.1	ST7-AS2	ST7	NA	chr7:116775450-116795646	inter
CUST_18661_PI429285431	0.9077087	A	0.92527616	A	0.987897002284344	0	lncRNA	20363-1_{1..2908}	lnc-SHISA6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SHISA6-1:1	chr17	 11464473	 11467380	+	lnc-SHISA6-1	lnc-SHISA6-1:1	ENSG00000254652	RP11-678P16.1	SHISA6	NA	chr17:11454473-11467380	inner
CUST_34664_PI429285431	5.655317	P	4.8249693	P	1.77811384906969	0	lncRNA	36116-1_{1..1247}	n341566|CR601318|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4037|NULL|-0.2943150|-0.3555713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341566|CR601318|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4037|NULL|-0.2943150|-0.3555713	chr8	 99033978	 99035224	-	NA	NA	NA	NA	MATN2	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80chr8:99023978-99045225"	NA	inner
LNCA_21_P0013330	1.948197	A	2.6494308	A	0.615045991291842	0	lncRNA	TCONS_l2_00026666	NA	NA	NA	NA	XLOC_l2_013877	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013877), lincRNA [TCONS_l2_00026666]"	chr7:66367877-66367818	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00026666	TCONS_l2_00026666	chr7	 66367818	 66367877	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37506_PI429285431	10.079167	P	10.695782	P	0.652199391423299	0	lncRNA	38609-1_{1..1005}	n345978|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1527|NULL|-1.4634900|-0.1839952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345978|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1527|NULL|-1.4634900|-0.1839952	chr2	118592364	118593368	+	NA	NA	NA	NA	DDX18	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60chr2:118582364-118589953"	NA	inter
CUST_31064_PI429285431	6.644333	P	6.2570667	P	1.30791274745442	0	lncRNA	32854-1_{1..541}	n337294|BC128440|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389851|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389851|1.8660200|-0.1850490	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337294|BC128440|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389851|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389851|1.8660200|-0.1850490	chrX	119005135	119005675	-	NA	NA	NA	NA	RNF113A	NA	chrX:119004495-119005791	inner
LNCA_21_P0003902	0.8786013	A	0.88784736	A	0.993611612651246	0	lncRNA	TCONS_00009137	NA	NA	NA	NA	XLOC_004120	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004120), lincRNA [TCONS_00009137]"	chr4:150071409-150070908	hs|4q31.23	Agilent_HUMAN_G3V2	TCONS_00009137	TCONS_00009137	chr4	150070908	150071409	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24183_PI429285431	0.8965094	A	0.88844585	A	1.00560487581819	0	lncRNA	25734-1_{1..570}	lnc-KCTD6-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCTD6-4:1	chr3	 59002933	 59003502	+	lnc-KCTD6-4	lnc-KCTD6-4:1	ENSG00000242428.1	RP11-147N17.1	C3orf67	NA	chr3:58992933-59013363	inner
CUST_22512_PI429285431	6.4348874	P	6.4096794	P	1.01762639741943	0	lncRNA	24099-1_{1..436}	lnc-SPO11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPO11-2:1	chr20	 55790564	 55790999	+	lnc-SPO11-2	lnc-SPO11-2:1	ENSG00000235032.1	RP4-813D12.2	BMP7	NA	chr20:55780564-55800922	inner
CUST_50899_PI429285431	3.6772099	P	3.8500485	P	0.887095542487759	0	lncRNA	54541-1_{1..547}	hg19_lincRNAsTranscripts_TCONS_l2_00006067 range=chr12:5336170-5353360 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006067 range=chr12:5336170-5353360 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	  5336170	  5336716	-	NA	NA	NA	NA	LOC100507271	NA	chr12:5343813-5347432	inter
CUST_42724_PI429285431	11.613861	P	11.479863	P	1.09733041635522	0	lncRNA	45664-1_{1..79}	ENST00000458770 ncrna:snoRNA chromosome:GRCh37:19:10220433:10220511:1 gene:ENSG00000238531 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000458770 ncrna:snoRNA chromosome:GRCh37:19:10220433:10220511:1 gene:ENSG00000238531 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	 10220433	 10220511	+	ENSG00000238531	ENST00000458770	NA	NA	P2RY11	NA	chr19:10222197-10226065	inner
CUST_39080_PI429285431	5.2428846	P	5.54832	P	0.809197966754317	0	lncRNA	40056-1_{1..2707}	n385583|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ahs.1||-0.3453650|-0.3526994	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385583|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ahs.1||-0.3453650|-0.3526994	chr9	 72935052	 72937758	+	NA	NA	NA	NA	SMC5	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70chr9:72925052-72947759"	NA	inner
LNCA_33_P3308101	9.907805	P	9.779333	P	1.09313531673306	0	lncRNA	XR_132811	XR_132811	XR_132811	   401357	Hs.520384	LOC401357	uncharacterized LOC401357	NA	THC2481823	NA	"PREDICTED: Homo sapiens hypothetical LOC401357 (LOC401357), miscRNA [XR_132811]"	chr7:56879807-56879748	hs|7p11.2	Agilent_HUMAN_G3V2	XR_132811	XR_132811	chr7	 56879748	 56879807	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37542_PI429285431	0.9248545	A	0.87407357	A	1.03582546384849	0	lncRNA	38648-1_{1..278}	n346019|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1569|NULL|-1.5313000|-0.2484972	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346019|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1569|NULL|-1.5313000|-0.2484972	chr1	 17767376	 17767653	+	NA	NA	NA	NA	RCC2	NA	chr1:17757376-17766220	inter
CUST_16685_PI429285431	0.8849376	A	0.87822974	A	1.00466036010284	0	lncRNA	18389-1_{1..838}	lnc-SLC44A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC44A1-1:1	chr9	107881012	107881849	+	lnc-SLC44A1-1	lnc-SLC44A1-1:1	XLOC_007499	linc-SLC44A1	NA	NA	NA	inter
CUST_7959_PI429285431	0.8814284	A	0.92649186	A	0.969247181605206	0	lncRNA	9571-1_{1..2570}	lnc-PSD4-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PSD4-1:11	chr2	114023053	114025622	+	lnc-PSD4-1	lnc-PSD4-1:11	ENSG00000189223	AC016683.6	PAX8	NA	chr2:114013053-114034587	inner
CUST_44725_PI429285431	13.026213	P	13.325462	P	0.812675327280065	0	lncRNA	49279-1_{1..1074}	"gi|311771780|ref|NR_037170.1| Homo sapiens uncharacterized LOC100507547 (LOC100507547), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|311771780|ref|NR_037170.1| Homo sapiens uncharacterized LOC100507547 (LOC100507547), transcript variant 2, non-coding RNA"	Chr6	 32120579	 32121652	-	100507547	NR_037170.1	NA	NA	NA	NA	NA	inter
CUST_44434_PI429285431	5.3342443	P	4.9423304	P	1.31213294419751	0	lncRNA	49046-1_{1..1220}	"gi|376319265|ref|NR_046345.1| Homo sapiens anaphase promoting complex subunit 10 (ANAPC10), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|376319265|ref|NR_046345.1| Homo sapiens anaphase promoting complex subunit 10 (ANAPC10), transcript variant 9, non-coding RNA"	Chr4	145915727	145916946	-	10393	NR_046345.1	NA	NA	NA	NA	NA	inter
CUST_25157_PI429285431	2.7316875	A	3.898881	A	0.445286722670741	0	lncRNA	26695-1_{1..482}	lnc-PRR14-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRR14-1:2	chr16	 30619621	 30620102	+	lnc-PRR14-1	lnc-PRR14-1:2	ENSG00000260167.1	RP11-146F11.5	ZNF689	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70chr16:30614686-30621682"	NA	inter
LNCA_21_P0003733	4.322116	P	4.4273596	P	0.929647957695144	0	lncRNA	ENST00000472346	XR_112626	XR_112626	NA	Hs.548859	XLOC_003912	NA	ENST00000472346	THC2751105	NA	"PREDICTED: Homo sapiens hypothetical LOC100506048, transcript variant 1 (LOC100506048), miscRNA [XR_112626]"	chr4:26861496-26861437	hs|4p15.2	Agilent_HUMAN_G3V2	ENST00000472346	ENST00000472346	chr4	 26861437	 26861496	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19437_PI429285431	6.154729	P	5.838294	P	1.24524964523982	0	lncRNA	21097-1_{1..294}	lnc-TPP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TPP2-1:1	chr13	103020205	103020498	+	lnc-TPP2-1	lnc-TPP2-1:1	ENSG00000234445.1	FGF14-AS1	FGF14	NA	chr13:103010205-103030395	inner
CUST_10287_PI429285431	3.9951477	P	4.3614388	P	0.775774306509053	0	lncRNA	11813-1_{1..805}	lnc-AC092329.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092329.1-1:5	chr19	 23456878	 23457682	-	lnc-AC092329.1-1	lnc-AC092329.1-1:5	XLOC_013274	linc-ZNF99-6	NA	NA	NA	inter
CUST_12649_PI429285431	0.90039515	A	0.89213455	A	1.00574223539052	0	lncRNA	14264-2_{3001..5849}	lnc-FTSJD2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FTSJD2-1:6	chr6	 37506308	 37509156	+	lnc-FTSJD2-1	lnc-FTSJD2-1:6	XLOC_005278	linc-ZFAND3-2	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40"	NA	inter
LNCA_21_P0014633	5.8355236	P	6.302091	P	0.723684411133543	0	lncRNA	ENST00000432038	XR_110827	XR_110827	NA	Hs.488388	LOC100506011	NA	ENST00000432038	THC2664648	NA	"PREDICTED: Homo sapiens hypothetical LOC100505824 (LOC100505824), miscRNA [XR_110827]"	chr1:147635620-147635679	hs|1q21.2	Agilent_HUMAN_G3V2	ENST00000432038	ENST00000432038	chr1	147635620	147635679	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002659	0.87545395	A	0.8770491	A	0.998894937306902	0	lncRNA	TCONS_00005137	NA	NA	NA	NA	XLOC_002063	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002063), lincRNA [TCONS_00005137]"	chr2:42642627-42642568	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00005137	TCONS_00005137	chr2	 42642568	 42642627	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45234_PI429285431	2.1864202	A	1.2663317	A	1.89223136603402	0	lncRNA	49690-2_{3001..4312}	"gi|310120234|ref|XR_108862.1| PREDICTED: Homo sapiens uncharacterized LOC100506342 (LOC100506342), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310120234|ref|XR_108862.1| PREDICTED: Homo sapiens uncharacterized LOC100506342 (LOC100506342), misc_RNA"	NA	NA	NA	NA	NA	XR_108862.1	NA	NA	NA	NA	NA	Unknown
CUST_15469_PI429285431	0.8947784	A	0.90019596	A	0.99625187538082	0	lncRNA	17157-1_{1..239}	lnc-ARHGAP6-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGAP6-1:5	chrX	 11074056	 11074294	-	lnc-ARHGAP6-1	lnc-ARHGAP6-1:5	XLOC_008111	linc-MID1	NA	NA	NA	inter
LNCA_21_P0005818	7.2891684	P	6.4463816	P	1.79351125647704	0	lncRNA	ENST00000521989	NA	NA	NA	NA	XLOC_007054	NA	ENST00000521989	THC2675160	NA	"BROAD Institute lincRNA (XLOC_007054), lincRNA [TCONS_00014976]"	chr8:37374091-37374032	hs|8p11.23	Agilent_HUMAN_G3V2	ENST00000521989	ENST00000521989	chr8	 37374032	 37374091	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21093_PI429285431	1.4797975	A	1.0756704	A	1.32328801513261	0	lncRNA	22718-1_{1..510}	lnc-AHNAK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AHNAK-1:1	chr11	 62194159	 62194668	-	lnc-AHNAK-1	lnc-AHNAK-1:1	ENSG00000255446.1	CTD-2531D15.4	AHNAK	"hg19_refFlat_SCGB1A1:range=chr11:62186568-621905635'pad=0,hg19_refFlat_SCGB1A1:range=chr11:62186568-621905635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30chr11:62201016-62204196"	NA	inter
CUST_10216_PI429285431	5.312109	P	5.4798117	P	0.890259172423834	0	lncRNA	11741-1_{1..368}	lnc-NAIF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAIF1-1:1	chr9	130819435	130819802	-	lnc-NAIF1-1	lnc-NAIF1-1:1	XLOC_007857	linc-FAM102A	NAIF1	NA	chr9:130823512-130829599	inter
CUST_5311_PI429285431	1.4447985	A	2.7378201	A	0.408095413033716	0	lncRNA	5251-1_{1..676}	"transcript_id ""ENST00000554105.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554105.1"" | genecode_v17"	chr15	 93856331	 93857006	+	ENSG00000257060.2	ENST00000554105.1	RP11-266O8.1	RP11-266O8.1-004	NA	NA	NA	inter
CUST_28556_PI429285431	4.4524293	P	4.5713787	P	0.920857994118847	0	lncRNA	30230-1_{1..2551}	n325907|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049862|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049862|0.4163500|-0.2181546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325907|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049862|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049862|0.4163500|-0.2181546	chr10	102123361	102125911	+	NA	NA	NA	NA	SCD	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00chr10:102113361-102124588"	NA	inner
CUST_22878_PI429285431	1.2860588	A	0.9243323	A	1.28496271660209	0	lncRNA	24454-2_{3001..3144}	lnc-SAP30-5:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:17	chr4	174463349	174463492	+	lnc-SAP30-5	lnc-SAP30-5:17	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174450349-174451378	inter
CUST_26988_PI429285431	1.639602	A	0.910078	A	1.65809193373723	0	lncRNA	28514-1_{1..3000}	n324084|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000128844|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000128844|0.0032198|-0.4164304	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324084|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000128844|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000128844|0.0032198|-0.4164304	chr9	 46666487	 46669486	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70"	NA	inter
CUST_49575_PI429285431	1.9583119	A	0.909085	A	2.06942060576805	0	lncRNA	53364-1_{1..420}	hg19_lincRNAsTranscripts_TCONS_l2_00024923 range=chr6:134833881-134844693 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024923 range=chr6:134833881-134844693 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	134833881	134834300	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21380_PI429285431	0.92228884	A	0.9210254	A	1.00087613345469	0	lncRNA	23001-2_{3001..3523}	lnc-GCA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GCA-1:1	chr2	163028967	163029489	+	lnc-GCA-1	lnc-GCA-1:1	ENSG00000236841.1	AC007750.5	FAP	"hg19_refFlat_FAP:range=chr2:163027489-1630998375'pad=0,hg19_refFlat_FAP:range=chr2:163027489-1630998375'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00chr2:163027200-163039255"	NA	inner
CUST_19237_PI429285431	11.279375	P	11.0916	P	1.13900572618267	0	lncRNA	20906-1_{1..2238}	lnc-ZNF174-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF174-1:2	chr16	  3536787	  3539024	+	lnc-ZNF174-1	lnc-ZNF174-1:2	ENSG00000262621.1	LA16c-306E5.2	CLUAP1	NA	chr16:3546168-3546953	inner
CUST_7093_PI429285431	8.376652	P	8.401374	P	0.983010001326013	0	lncRNA	7028-1_{1..476}	"transcript_id ""ENST00000602985.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602985.1"" | genecode_v17"	chrX	 73164186	 73164661	+	ENSG00000225470.2	ENST00000602985.1	JPX	JPX-008	NA	NA	NA	inter
CUST_46656_PI429285431	4.4837966	P	3.5458524	P	1.91579633658373	0	lncRNA	50827-2_{3001..6000}	"gi|388454231|ref|NR_049763.1| Homo sapiens CCR4-NOT transcription complex, subunit 1 (CNOT1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388454231|ref|NR_049763.1| Homo sapiens CCR4-NOT transcription complex, subunit 1 (CNOT1), transcript variant 4, non-coding RNA"	Chr16	 58556850	 58559849	-	23019	NR_049763.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014333	3.3871214	P	3.8879645	P	0.706693674086248	0	lncRNA	XR_109329	XR_109329	XR_109329	NA	Hs.569533	LOC100506467	uncharacterized LOC100506467	NA	THC2629617	NA	"PREDICTED: Homo sapiens hypothetical LOC100506467 (LOC100506467), miscRNA [XR_109329]"	chr16:85181202-85181143	hs|16q24.1	Agilent_HUMAN_G3V2	XR_109329	XR_109329	chr16	 85181143	 85181202	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30924_PI429285431	1.9195167	A	0.97734934	A	1.92141260866418	0	lncRNA	32712-1_{1..418}	n336979|BC107034|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338598|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338598|-0.9676300|-0.2724391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336979|BC107034|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338598|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338598|-0.9676300|-0.2724391	chr1	201984906	201985323	-	NA	NA	NA	NA	ELF3	NA	chr1:201979690-201986316	inner
CUST_15995_PI429285431	6.305828	P	6.2536125	P	1.03685596796487	0	lncRNA	17692-1_{1..375}	lnc-RP11-831A10.1.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-831A10.1.1-1:4	chr11	119865303	119865677	-	lnc-RP11-831A10.1.1-1	lnc-RP11-831A10.1.1-1:4	XLOC_009578	linc-PVRL1	NA	NA	NA	inter
LNCA_24_P497464	4.6078424	P	5.352029	P	0.597004371243462	0	lncRNA	XR_109424	XR_109424	XR_109424	   400618	Hs.657374	FLJ37644	uncharacterized LOC400618	NA	THC2632718	NA	"PREDICTED: Homo sapiens hypothetical LOC400618 (FLJ37644), miscRNA [XR_109424]"	chr17:70067254-70067195	hs|17q24.3	Agilent_HUMAN_G3V2	XR_109424	XR_109424	chr17	 70067195	 70067254	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48737_PI429285431	0.88578445	A	1.2324058	A	0.786423669954077	0	lncRNA	52576-1_{1..537}	hg19_lincRNAsTranscripts_TCONS_l2_00013985 range=chr2:131451355-131460280 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013985 range=chr2:131451355-131460280 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	131451355	131451891	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007205	2.9207191	A	3.4360266	P	0.699643792896467	0	lncRNA	TCONS_00019293	NA	NA	NA	NA	XLOC_009120	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009120), lincRNA [TCONS_00019293]"	chr11:45378627-45378686	hs|11p11.2	Agilent_HUMAN_G3V2	TCONS_00019293	TCONS_00019293	chr11	 45378627	 45378686	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011856	4.851414	P	5.262438	P	0.752089364183341	0	lncRNA	TCONS_l2_00014004	NA	NA	NA	NA	XLOC_l2_007571	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007571), lincRNA [TCONS_l2_00014004]"	chr2:136758031-136758090	hs|2q21.3	Agilent_HUMAN_G3V2	TCONS_l2_00014004	TCONS_l2_00014004	chr2	136758031	136758090	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2180_PI429285431	3.1569643	A	2.20119	A	1.93962035630114	0	lncRNA	2172-1_{1..363}	"transcript_id ""ENST00000503685.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503685.1"" | genecode_v17"	chr5	 67670593	 67670955	+	ENSG00000251044.1	ENST00000503685.1	CTD-2582M21.1	CTD-2582M21.1-001	NA	NA	NA	inter
CUST_34205_PI429285431	4.387307	P	5.208995	P	0.565779574770696	0	lncRNA	35719-1_{1..1542}	n341060|BC039516|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3526|NULL|-0.6580700|-0.1605984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341060|BC039516|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3526|NULL|-0.6580700|-0.1605984	chr11	 68779898	 68781439	+	NA	NA	NA	NA	MRGPRF	NA	chr11:68771862-68780850	inner
CUST_19360_PI429285431	0.91120327	A	0.91857404	A	0.994904000444002	0	lncRNA	21023-1_{1..420}	lnc-PHF3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHF3-3:1	chr6	 66191784	 66192203	+	lnc-PHF3-3	lnc-PHF3-3:1	ENSG00000230672.1	RP5-1018A4.3	EYS	NA	chr6:66181784-66201981	inner
CUST_8550_PI429285431	2.8519952	A	1.5160859	A	2.52434535755739	0	lncRNA	10109-1_{1..2035}	lnc-TMEM211-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM211-1:1	chr22	 25423511	 25425545	-	lnc-TMEM211-1	lnc-TMEM211-1:1	ENSG00000251180	ENST00000507732	KIAA1671	"hg19_refFlat_KIAA1671:range=chr22:25423967-255867475'pad=0,hg19_refFlat_KIAA1671:range=chr22:25423967-255867475'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.00chr22:25423941-25435294"	NA	inner
LNCA_21_P0005696	1.1092452	A	0.87833226	A	1.17357735615707	0	lncRNA	TCONS_00014700	NA	NA	NA	NA	XLOC_006798	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006798), lincRNA [TCONS_00014700]"	chr8:55291773-55291832	hs|8q11.23	Agilent_HUMAN_G3V2	TCONS_00014700	TCONS_00014700	chr8	 55291773	 55291832	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8262_PI429285431	6.29862	P	6.2270646	P	1.05084901564043	0	lncRNA	9850-2_{3001..5969}	lnc-DUSP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DUSP1-3:1	chr5	172301175	172304143	-	lnc-DUSP1-3	lnc-DUSP1-3:1	ENSG00000248606	ENST00000514700	ERGIC1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20chr5:172288175-172309818"	NA	inner
CUST_4430_PI429285431	5.0541215	P	5.0351543	P	1.01323386379479	0	lncRNA	4380-1_{1..536}	"transcript_id ""ENST00000543558.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000543558.1"" | genecode_v17"	chr12	119083120	119083655	-	ENSG00000255714.1	ENST00000543558.1	RP11-121J20.1	RP11-121J20.1-001	NA	NA	NA	inter
CUST_34743_PI429285431	1.7821524	A	1.2108216	A	1.48589358673109	0	lncRNA	36186-2_{3001..4706}	n341648|AK127804|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4119|NULL|-1.1378900|-0.4471251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341648|AK127804|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4119|NULL|-1.1378900|-0.4471251	chr9	  3221301	  3223006	-	NA	NA	NA	NA	RFX3	NA	chr9:3224645-3233008	inter
CUST_400_PI429285431	0.88553685	A	0.88774496	A	0.998470625466131	0	lncRNA	392-1_{1..2609}	"transcript_id ""ENST00000431621.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431621.1"" | genecode_v17"	chr1	143355262	143357870	+	ENSG00000242569.2	ENST00000431621.1	RP11-435B5.3	RP11-435B5.3-001	NA	NA	NA	inter
CUST_29210_PI429285431	9.332248	P	9.086524	P	1.1856876454427	0	lncRNA	30957-1_{1..631}	n326731|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000002188|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000002188|-1.0741100|-0.1742900	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326731|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000002188|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000002188|-1.0741100|-0.1742900	chr1	  2471218	  2471848	-	NA	NA	NA	NA	HES5	NA	chr1:2461218-2461684	inter
CUST_49357_PI429285431	4.8859205	P	4.783391	P	1.07365426821625	0	lncRNA	53170-1_{1..1105}	hg19_lincRNAsTranscripts_TCONS_l2_00023026 range=chr5:95169505-95170975 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023026 range=chr5:95169505-95170975 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 95169505	 95170609	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
CUST_9522_PI429285431	3.523917	P	3.165615	P	1.28191624017739	0	lncRNA	11030-1_{1..759}	lnc-FOXN4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-FOXN4-1:1	chr12	109797066	109797824	-	lnc-FOXN4-1	lnc-FOXN4-1:1	XLOC_010195	linc-FOXN4	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90"	NA	inter
CUST_28637_PI429285431	0.90005034	A	0.9017027	A	0.998855326963286	0	lncRNA	30328-1_{1..398}	n326014|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047583|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047583|-1.3748500|-0.3810047	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326014|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047583|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047583|-1.3748500|-0.3810047	chr10	 36767549	 36767946	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011545	2.30996	A	2.9645824	P	0.635241732840722	0	lncRNA	TCONS_l2_00010786	NA	NA	NA	NA	XLOC_l2_005793	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005793), lincRNA [TCONS_l2_00010786]"	chr17:42011563-42015597	hs|17q21.31	Agilent_HUMAN_G3V2	TCONS_l2_00010786	TCONS_l2_00010786	chr17	 42011563	 42015597	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14341_PI429285431	13.550432	P	13.374627	P	1.12959452407564	0	lncRNA	15998-1_{1..2886}	lnc-ARHGEF9-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ARHGEF9-1:9	chrX	 62780712	 62783597	-	lnc-ARHGEF9-1	lnc-ARHGEF9-1:9	XLOC_008174	linc-SPIN4	NA	NA	NA	inter
LNCA_21_P0004530	0.8752179	A	0.8756876	A	0.999674481761853	0	lncRNA	TCONS_00010798	NA	NA	NA	NA	XLOC_004577	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004577), lincRNA [TCONS_00010798]"	chr5:139553546-139553605	hs|5q31.3	Agilent_HUMAN_G3V2	TCONS_00010798	TCONS_00010798	chr5	139553546	139553605	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18598_PI429285431	0.89887005	A	0.88911784	A	1.00678261531839	0	lncRNA	20305-1_{1..647}	lnc-WRN-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WRN-3:2	chr8	 31201647	 31202293	+	lnc-WRN-3	lnc-WRN-3:2	ENSG00000254095	RP11-566H8.2	NA	NA	NA	inter
CUST_6351_PI429285431	2.1351917	A	1.834746	A	1.2315248165611	0	lncRNA	6275-1_{1..441}	"transcript_id ""ENST00000589310.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589310.1"" | genecode_v17"	chr19	 15937855	 15938295	-	ENSG00000267308.1	ENST00000589310.1	AC004510.3	AC004510.3-001	NA	NA	NA	inter
CUST_32208_PI429285431	0.8868527	A	1.2607893	A	0.771673998408156	0	lncRNA	33904-1_{1..3000}	n338785|BX647243|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1207|NULL|-1.1208300|-0.3551080	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338785|BX647243|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1207|NULL|-1.1208300|-0.3551080	chr13	 78493823	 78496822	+	NA	NA	NA	NA	EDNRB	NA	chr13:78483823-78493903	inter
CUST_14486_PI429285431	1.1795194	A	1.2400577	A	0.95890626438146	0	lncRNA	16152-1_{1..620}	lnc-CRYBA4-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-9:2	chr22	 27753434	 27754053	+	lnc-CRYBA4-9	lnc-CRYBA4-9:2	XLOC_014198	linc-HSCB-5	NA	NA	NA	inter
CUST_17539_PI429285431	0.89234775	A	0.901299	A	0.993814674672367	0	lncRNA	19264-1_{1..1660}	lnc-NR2F1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR2F1-1:3	chr5	 92909152	 92910811	+	lnc-NR2F1-1	lnc-NR2F1-1:3	XLOC_004475	linc-NR2F1-1	NR2F1	NA	chr5:92919043-92919378	inter
CUST_32430_PI429285431	4.126613	A	0.881269	A	9.48300305016519	0	lncRNA	34105-1_{1..922}	n339024|CR593539|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1453|NULL|-1.3368500|-0.3136992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339024|CR593539|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1453|NULL|-1.3368500|-0.3136992	chr2	176047420	176048341	+	NA	NA	NA	NA	ATP5G3	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90chr2:176040986-176046490"	NA	inter
CUST_14318_PI429285431	0.9152631	A	0.89135486	A	1.01671000524058	0	lncRNA	15976-1_{1..472}	lnc-CHST4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHST4-1:2	chr16	 71551508	 71551979	+	lnc-CHST4-1	lnc-CHST4-1:2	XLOC_011775	linc-CHST4	CHST4	NA	chr16:71560023-71561750	inter
LNCA_21_P0014512	2.3773427	A	2.5661535	A	0.877328597084727	0	lncRNA	XR_110164	XR_110164	XR_110164	NA	Hs.657378	LOC100506089	uncharacterized LOC100506089	NA	THC2625335	NA	"PREDICTED: Homo sapiens hypothetical LOC100506089 (LOC100506089), miscRNA [XR_110164]"	chr18:77960745-77960804	hs|18q23	Agilent_HUMAN_G3V2	XR_110164	XR_110164	chr18	 77960745	 77960804	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21542_PI429285431	2.0822835	A	2.7614355	A	0.624532259658499	0	lncRNA	23159-1_{1..407}	lnc-GDPD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GDPD4-1:1	chr11	 76837164	 76837570	-	lnc-GDPD4-1	lnc-GDPD4-1:1	ENSG00000254808.1	RP11-689N19.3	CAPN5	NA	chr11:76827164-76837201	inner
CUST_37776_PI429285431	0.8789679	A	0.8904936	A	0.992042820840558	0	lncRNA	38874-1_{1..1363}	n346286|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1836|NULL|-1.3100000|-0.3154740	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n346286|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1836|NULL|-1.3100000|-0.3154740	chr19	 42056502	 42057864	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30"	NA	inter
CUST_30069_PI429285431	9.253142	P	9.325865	P	0.950841646982978	0	lncRNA	31838-1_{1..422}	n334585|U70543|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221117_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221117_04|-1.3625600|-0.2996324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334585|U70543|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221117_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221117_04|-1.3625600|-0.2996324	chr6	  3852548	  3852969	-	NA	NA	NA	NA	FAM50B	"hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00chr6:3849632-3851551"	NA	inter
CUST_33751_PI429285431	7.143205	P	7.1770897	P	0.976786590500103	0	lncRNA	35307-1_{1..1499}	n340530|BC057791|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2992|NULL|3.9721000|-0.1824286	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340530|BC057791|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2992|NULL|3.9721000|-0.1824286	chr17	 16456423	 16457921	-	NA	NA	NA	NA	ZNF287	NA	chr17:16453631-16472520	inner
CUST_30097_PI429285431	5.3240094	P	5.5416408	P	0.859976176973981	0	lncRNA	31869-1_{1..278}	n334635|U90307|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000222168|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000222168|1.8721400|-0.0701836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334635|U90307|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000222168|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000222168|1.8721400|-0.0701836	chr5	  3596468	  3596745	+	NA	NA	NA	NA	IRX1	NA	chr5:3596168-3601517	inner
CUST_39378_PI429285431	2.1352398	A	1.8600281	A	1.21017165588196	0	lncRNA	40341-1_{1..376}	n386516|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010msr.1||-0.7212890|-0.2759038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386516|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010msr.1||-0.7212890|-0.2759038	chr9	102117690	102118065	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36221_PI429285431	0.954506	A	1.5811793	A	0.647668148041101	0	lncRNA	37474-1_{1..2811}	n344764|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_313|NULL|-1.1366700|-0.2682003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344764|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_313|NULL|-1.1366700|-0.2682003	chrX	150648123	150650933	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13670_PI429285431	4.713209	P	4.9584255	P	0.843689177261962	0	lncRNA	15307-1_{1..895}	lnc-BOD1-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BOD1-2:9	chr5	173215871	173216765	-	lnc-BOD1-2	lnc-BOD1-2:9	XLOC_005088	linc-BOD1-2	NA	NA	NA	inter
LNCA_21_P0007752	2.5421524	A	2.783161	A	0.846153552608292	0	lncRNA	TCONS_00020904	NA	NA	NA	NA	XLOC_010183	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010183), lincRNA [TCONS_00020904]"	chr12:105837662-105836749	hs|12q23.3	Agilent_HUMAN_G3V2	TCONS_00020904	TCONS_00020904	chr12	105836749	105837662	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_228_PI429201921	0.8992292	A	0.918963	A	0.986414696779271	0	lncRNA	177-2_{3001..5881}	TC01005758.hg.1	TCONS_00000629-XLOC_000995 // Rinn lincRNAs // linc-FCGR1B-10 chr1:-:142950834-142956716 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:142950834-142956716	NA	Affy_HUMAN_HTA2.0	TCONS_00000629-XLOC_000995	linc-FCGR1B-10	chr1	142950834	142956716	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008915	2.986016	P	3.1387565	P	0.899540099397762	0	lncRNA	TCONS_00024352	NA	NA	NA	NA	XLOC_011674	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011674), lincRNA [TCONS_00024352]"	chr16:24258569-24259194	hs|16p12.1	Agilent_HUMAN_G3V2	TCONS_00024352	TCONS_00024352	chr16	 24258569	 24259194	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002198	0.8990482	A	2.6351366	A	0.300182462864272	0	lncRNA	THC2670398	NA	NA	NA	NA	XLOC_001418	NA	NA	THC2670398	NA	"BROAD Institute lincRNA (XLOC_001418), lincRNA [TCONS_00003630]"	NA	NA	Agilent_HUMAN_G3V2	THC2670398	THC2670398	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27444_PI429285431	3.2392766	A	2.1762207	A	2.08935248014893	0	lncRNA	29013-1_{1..1588}	n324619|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039645|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039645|-1.2504000|-0.1947061	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324619|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039645|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039645|-1.2504000|-0.1947061	chr6	  2799889	  2801476	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36548_PI429285431	3.1502438	P	4.019524	P	0.547419905265002	0	lncRNA	37744-1_{1..2294}	n345046|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_595|NULL|-1.3673200|-0.3606736	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345046|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_595|NULL|-1.3673200|-0.3606736	chr9	 23647972	 23650265	-	NA	NA	NA	NA	ELAVL2	NA	chr9:23681883-23682706	inter
CUST_4335_PI429285431	0.912407	A	0.92827004	A	0.989064807246577	0	lncRNA	4290-1_{1..354}	"transcript_id ""ENST00000551995.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551995.1"" | genecode_v17"	chr12	 80083924	 80084277	+	ENSG00000258048.1	ENST00000551995.1	RP11-530C5.1	RP11-530C5.1-001	PPP1R12A	"hg19_refFlat_PAWR:range=chr12:79986387-800840245'pad=0,hg19_refFlat_PAWR:range=chr12:79986387-800840245'pad=0 3'pad=0 strand=- repeatMasking=none,-102.40chr12:80167343-80182231"	NA	inner
CUST_16352_PI429285431	0.8924647	A	0.89878225	A	0.995630581835155	0	lncRNA	18052-1_{1..1430}	lnc-CDK5R2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CDK5R2-1:5	chr2	219842204	219843633	+	lnc-CDK5R2-1	lnc-CDK5R2-1:5	XLOC_001866	linc-FAM134A	FEV	NA	chr2:219845809-219850379	inter
CUST_33320_PI429285431	6.193402	P	5.8907623	P	1.23339910110489	0	lncRNA	34903-1_{1..1486}	n340037|BC020302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2492|NULL|-1.1306800|-0.2404395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340037|BC020302|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2492|NULL|-1.1306800|-0.2404395	chr10	 60273108	 60274593	+	NA	NA	NA	NA	BICC1	NA	chr10:60272904-60284558	inner
CUST_37725_PI429285431	4.6535482	P	4.9970818	P	0.788108627657642	0	lncRNA	38822-1_{1..582}	n346229|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1779|NULL|-1.3130800|-0.1076453	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346229|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1779|NULL|-1.3130800|-0.1076453	chr16	 29577500	 29578081	-	NA	NA	NA	NA	SPN	NA	chr16:29630106-29634939	inter
LNCA_21_P0014300	3.4580984	P	2.7943008	A	1.5842473474623	0	lncRNA	ENST00000554440	XR_109222	XR_109222	NA	Hs.97584	LOC100507166	NA	ENST00000554440	THC2647435	NA	"PREDICTED: Homo sapiens hypothetical LOC100507166 (LOC100507166), miscRNA [XR_109222]"	chr15:93013522-93013463	hs|15q26.1	Agilent_HUMAN_G3V2	ENST00000554440	ENST00000554440	chr15	 93013463	 93013522	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5545_PI429285431	1.0913882	A	1.5710006	A	0.717170275852859	0	lncRNA	5475-1_{1..1010}	"transcript_id ""ENST00000566439.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000566439.2"" | genecode_v17"	chr16	 52119192	 52120201	+	ENSG00000261749.2	ENST00000566439.2	RP11-152O14.1	RP11-152O14.1-001	NA	NA	NA	inter
CUST_32650_PI429285431	4.6704373	P	4.6946898	P	0.983329956886984	0	lncRNA	34304-1_{1..3000}	n339276|BX537575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1708|NULL|1.0760000|-0.2849572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339276|BX537575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1708|NULL|1.0760000|-0.2849572	chr16	 71885532	 71888531	+	NA	NA	NA	NA	ATXN1L	NA	chr16:71875532-71901231	inner
LNCA_21_P0009381	0.88343424	A	0.8962057	A	0.991186566532447	0	lncRNA	TCONS_00025863	NA	NA	NA	NA	XLOC_012142	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012142), lincRNA [TCONS_00025863]"	chr17:20979254-20979795	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_00025863	TCONS_00025863	chr17	 20979254	 20979795	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007143	0.882938	A	0.89537203	A	0.991418420936501	0	lncRNA	ENST00000449694	NA	NA	NA	NA	XLOC_009158	NA	ENST00000449694	NA	NA	"BROAD Institute lincRNA (XLOC_009158), lincRNA [TCONS_00019144]"	chr11:64200080-64200139	hs|11q13.1	Agilent_HUMAN_G3V2	ENST00000449694	ENST00000449694	chr11	 64200080	 64200139	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40588_PI429285431	0.89985913	A	0.9148694	A	0.989649611449086	0	lncRNA	41337-2_{3001..3220}	n410051|NR_036489|lncRNA|Homosapiens||RefGeneNoncode|NR_036489||1.5274000|-0.2779439	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410051|NR_036489|lncRNA|Homosapiens||RefGeneNoncode|NR_036489||1.5274000|-0.2779439	chr18	  4267601	  4267820	+	NA	NA	NA	NA	DLGAP1	NA	chr18:4254601-4306000	inner
CUST_16409_PI429285431	0.9165685	A	0.9265985	A	0.993071844873847	0	lncRNA	18106-1_{1..554}	lnc-MRFAP1L1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRFAP1L1-2:4	chr4	  6673264	  6673817	-	lnc-MRFAP1L1-2	lnc-MRFAP1L1-2:4	XLOC_003870	linc-PPP2R2C-1	NA	NA	NA	inter
LNCA_21_P0011736	0.91169393	A	0.8851276	A	1.0185849668675	0	lncRNA	TCONS_l2_00013006	NA	NA	NA	NA	XLOC_l2_006994	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006994), lincRNA [TCONS_l2_00013006]"	chr19:28951016-28950957	hs|19q12	Agilent_HUMAN_G3V2	TCONS_l2_00013006	TCONS_l2_00013006	chr19	 28950957	 28951016	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51088_PI429285431	0.8900621	A	0.89959	A	0.99341752302248	0	lncRNA	54726-1_{1..1333}	hg19_lincRNAsTranscripts_TCONS_l2_00006863 range=chr13:53775495-53777383 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006863 range=chr13:53775495-53777383 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 53775495	 53776827	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006889	5.341296	P	5.591455	P	0.84080374482871	0	lncRNA	TCONS_00018266	NA	NA	NA	NA	XLOC_008547	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008547), lincRNA [TCONS_00018266]"	chr10:89740658-89740717	hs|10q23.31	Agilent_HUMAN_G3V2	TCONS_00018266	TCONS_00018266	chr10	 89740658	 89740717	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19347_PI429285431	0.87824553	A	0.87880945	A	0.999609196825401	0	lncRNA	21013-1_{1..592}	lnc-DBT-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DBT-3:1	chr1	100951472	100952063	-	lnc-DBT-3	lnc-DBT-3:1	ENSG00000228086.1	RP5-837M10.4	CDC14A	"hg19_refFlat_CDC14A:range=chr1:100818511-1009500225'pad=0,hg19_refFlat_CDC14A:range=chr1:100818511-1009500225'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_CDC14A:range=chr1:100818511-1009649355'pad=0,hg19_refFlat_CDC14A:range=chr1:100818511-1009649355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_CDC14A:range=chr1:100818511-1009838365'pad=0,hg19_refFlat_CDC14A:range=chr1:100818511-1009838365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50chr1:100941472-100961553"	NA	inner
CUST_10116_PI429285431	1.0679648	A	0.89424837	A	1.12796040856663	0	lncRNA	11641-1_{1..338}	lnc-MYO16-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYO16-1:3	chr13	109940051	109940388	+	lnc-MYO16-1	lnc-MYO16-1:3	XLOC_010491	linc-COL4A2-7	NA	NA	NA	inter
CUST_15989_PI429285431	1.8382841	A	2.9375908	A	0.4667407383178	0	lncRNA	17686-3_{6001..8789}	lnc-ZNF207-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ZNF207-1:1	chr17	 30740851	 30743639	+	lnc-ZNF207-1	lnc-ZNF207-1:1	XLOC_012169	linc-PSMD11	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20"	NA	inter
CUST_14566_PI429285431	6.998125	P	7.106103	P	0.927887625942617	0	lncRNA	16234-1_{1..320}	lnc-MRPS33-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPS33-1:1	chr7	140774650	140774969	-	lnc-MRPS33-1	lnc-MRPS33-1:1	XLOC_006623	linc-MRPS33-1	LOC100507421	NA	chr7:140774032-140784682	inner
LNCA_21_P0007751	0.8734099	A	0.87442636	A	0.999295691758417	0	lncRNA	TCONS_00020900	NA	NA	NA	NA	XLOC_010177	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010177), lincRNA [TCONS_00020900]"	chr12:103513654-103513595	hs|12q23.2	Agilent_HUMAN_G3V2	TCONS_00020900	TCONS_00020900	chr12	103513595	103513654	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007636	0.87355334	A	0.87425447	A	0.999514131789499	0	lncRNA	TCONS_00020580	NA	NA	NA	NA	XLOC_009896	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009896), lincRNA [TCONS_00020580]"	chr12:116797404-116797559	hs|12q24.21	Agilent_HUMAN_G3V2	TCONS_00020580	TCONS_00020580	chr12	116797404	116797559	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47317_PI429285431	1.798813	A	2.5787125	A	0.582407363070314	0	lncRNA	51377-2_{3001..4030}	"gi|392933950|ref|NR_072975.1| Homo sapiens CCCTC-binding factor (zinc finger protein)-like (CTCFL), transcript variant 17, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392933950|ref|NR_072975.1| Homo sapiens CCCTC-binding factor (zinc finger protein)-like (CTCFL), transcript variant 17, non-coding RNA"	Chr20	 56077610	 56078639	-	140690	NR_072975.1	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70"	NA	inter
CUST_3376_PI429285431	3.340126	P	3.4703865	P	0.913666459295542	0	lncRNA	3350-1_{1..443}	"transcript_id ""ENST00000435092.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435092.1"" | genecode_v17"	chr9	 22203989	 22204431	-	ENSG00000236921.1	ENST00000435092.1	RP11-408N14.1	RP11-408N14.1-001	NA	NA	NA	inter
CUST_27281_PI429285431	0.89022195	A	1.3700769	A	0.717049713278065	0	lncRNA	28837-1_{1..632}	n324430|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041716|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041716|-1.2898900|-0.4014660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324430|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041716|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041716|-1.2898900|-0.4014660	chr6	108703538	108704169	+	NA	NA	NA	NA	LACE1	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-62.40chr6:108693538-108714443"	NA	inner
CUST_19957_PI429285431	2.434755	A	1.4436841	A	1.9876598660699	0	lncRNA	21611-1_{1..2428}	lnc-SAP30-5:19	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:19	chr4	174458514	174460941	+	lnc-SAP30-5	lnc-SAP30-5:19	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174448514-174451378	inter
CUST_34341_PI429285431	1.1142926	A	1.1657194	A	0.964981507127501	0	lncRNA	35833-2_{3001..3943}	n341209|AK022806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3677|NULL|-0.8678960|-0.3574156	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341209|AK022806|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3677|NULL|-0.8678960|-0.3574156	chr7	 26540615	 26541557	+	NA	NA	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40"	NA	inter
CUST_35973_PI429285431	6.8594193	P	6.7165294	P	1.10411458288629	0	lncRNA	37320-2_{3001..3373}	n344595|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_143|NULL|-1.2970000|-0.2761046	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344595|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_143|NULL|-1.2970000|-0.2761046	chr2	208087574	208087946	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42977_PI429285431	6.7933664	P	6.716746	P	1.05454481013341	0	lncRNA	46126-1_{1..128}	ENST00000390847 ncrna:snoRNA chromosome:GRCh37:17:41092592:41092719:-1 gene:ENSG00000212149 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390847 ncrna:snoRNA chromosome:GRCh37:17:41092592:41092719:-1 gene:ENSG00000212149 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 41092592	 41092719	-	ENSG00000212149	ENST00000390847	NA	NA	AARSD1	NA	chr17:41084867-41102719	inter
CUST_44307_PI429285431	6.838335	P	7.8138647	P	0.508553091384683	0	lncRNA	48939-2_{3001..3952}	"gi|294997263|ref|NR_033519.1| Homo sapiens mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) (MASP1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|294997263|ref|NR_033519.1| Homo sapiens mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) (MASP1), transcript variant 4, non-coding RNA"	Chr3	186954870	186955821	-	5648	NR_033519.1	NA	NA	NA	NA	NA	inter
CUST_26126_PI429285431	4.980496	P	5.3757114	P	0.76037584106448	0	lncRNA	27637-1_{1..409}	lnc-RBM17-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBM17-1:1	chr10	  6222098	  6222506	+	lnc-RBM17-1	lnc-RBM17-1:1	ENSG00000224502.1	RP11-414H17.8	PFKFB3	NA	chr10:6212098-6232152	inner
CUST_11763_PI429285431	0.8965424	A	1.5919276	A	0.61754441200986	0	lncRNA	13343-1_{1..314}	lnc-ITGA6-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITGA6-1:5	chr2	173232499	173232812	+	lnc-ITGA6-1	lnc-ITGA6-1:5	XLOC_001757	linc-ITGA6-1	NA	NA	NA	inter
CUST_23306_PI429285431	2.2140114	A	1.7098069	A	1.41834106928967	0	lncRNA	24877-1_{1..519}	lnc-CHPF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHPF-1:1	chr2	220381418	220381936	-	lnc-CHPF-1	lnc-CHPF-1:1	ENSG00000227432.1	AC053503.11	ACCN4	NA	chr2:220378892-220391599	inner
CUST_43722_PI429285431	6.4214334	P	6.1025376	P	1.2473754757989	0	lncRNA	48467-1_{1..797}	"gi|254750681|ref|NR_026761.2| Homo sapiens long intergenic non-protein coding RNA 467 (LINC00467), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|254750681|ref|NR_026761.2| Homo sapiens long intergenic non-protein coding RNA 467 (LINC00467), non-coding RNA"	Chr1	211556097	211556893	+	84791	NR_026761.2	NA	NA	NA	NA	NA	inter
CUST_49464_PI429285431	1.7480596	A	2.3794055	A	0.645573874054272	0	lncRNA	53259-3_{6001..8128}	hg19_lincRNAsTranscripts_TCONS_l2_00024862 range=chr6:107165125-107235381 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024862 range=chr6:107165125-107235381 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	107171125	107173252	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50"	NA	inter
CUST_12908_PI429285431	5.7092495	P	6.1373677	P	0.743230596840585	0	lncRNA	14537-1_{1..1505}	lnc-WDR7-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR7-6:1	chr18	 53694883	 53696387	+	lnc-WDR7-6	lnc-WDR7-6:1	XLOC_012685	linc-WDR7-3	NA	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20"	NA	inter
CUST_16830_PI429285431	0.88033247	A	0.8872455	A	0.995219714852099	0	lncRNA	18536-1_{1..417}	lnc-IRF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-IRF2-1:1	chr4	185406971	185407387	-	lnc-IRF2-1	lnc-IRF2-1:1	XLOC_004206	linc-IRF2-1	NA	NA	NA	inter
CUST_1901_PI429285431	1.0780176	A	0.92082435	A	1.11511557922822	0	lncRNA	1892-1_{1..525}	"transcript_id ""ENST00000500324.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000500324.2"" | genecode_v17"	chr4	137094354	137094878	-	ENSG00000251567.1	ENST00000500324.2	RP11-775H9.2	RP11-775H9.2-002	NA	NA	NA	inter
CUST_39073_PI429285431	4.33693	P	4.599877	P	0.833383822452144	0	lncRNA	40048-1_{1..614}	n385557|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aem.1||-0.9061390|-0.3425168	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385557|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aem.1||-0.9061390|-0.3425168	chr9	 67254266	 67254879	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6663_PI429285431	0.88638747	A	0.91653657	A	0.97931908144877	0	lncRNA	6609-1_{1..504}	"transcript_id ""ENST00000420928.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420928.1"" | genecode_v17"	chr20	 22260866	 22261369	-	ENSG00000225321.1	ENST00000420928.1	RP5-828K20.2	RP5-828K20.2-001	NA	NA	NA	inter
CUST_31546_PI429285431	0.8896437	A	0.886253	A	1.00235301815735	0	lncRNA	33305-1_{1..407}	n338035|AF088020|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|422|NULL|-1.2205700|-0.4007220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338035|AF088020|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|422|NULL|-1.2205700|-0.4007220	chr15	 76833536	 76833942	-	NA	NA	NA	NA	SCAPER	NA	chr15:76823536-76843934	inner
LNCA_21_P0006271	0.89998585	A	0.92378986	A	0.983635691776084	0	lncRNA	TCONS_00016327	NA	NA	NA	NA	XLOC_007703	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007703), lincRNA [TCONS_00016327]"	chr9:65781969-65767488	hs|9q12	Agilent_HUMAN_G3V2	TCONS_00016327	TCONS_00016327	chr9	 65767488	 65781969	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20952_PI429285431	0.92412066	A	0.99787307	A	0.950163432426088	0	lncRNA	22583-1_{1..170}	lnc-CTH-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTH-7:1	chr1	 72039117	 72039286	+	lnc-CTH-7	lnc-CTH-7:1	ENSG00000231985.1	RP11-82L20.1	NEGR1	NA	chr1:72029117-72049241	inner
CUST_42699_PI429285431	0.90205026	A	0.921861	A	0.986362091952267	0	lncRNA	45624-1_{1..72}	ENST00000363552 ncrna:snoRNA chromosome:GRCh37:X:86401736:86401807:1 gene:ENSG00000200422 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363552 ncrna:snoRNA chromosome:GRCh37:X:86401736:86401807:1 gene:ENSG00000200422 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	 86401736	 86401807	+	ENSG00000200422	ENST00000363552	NA	NA	NA	NA	NA	inter
CUST_41805_PI429285431	3.2592897	A	4.115248	P	0.552498211708655	0	lncRNA	43392-1_{1..88}	ENST00000385236 ncrna:miRNA chromosome:GRCh37:11:121970465:121970552:-1 gene:ENSG00000207971 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385236 ncrna:miRNA chromosome:GRCh37:11:121970465:121970552:-1 gene:ENSG00000207971 gene_biotype:miRNA transcript_biotype:miRNA	chr11	121970465	121970552	-	ENSG00000207971	ENST00000385236	NA	NA	NA	NA	NA	inter
CUST_44404_PI429285431	0.8959508	A	0.9105201	A	0.98995215112577	0	lncRNA	49019-1_{1..1055}	"gi|255304933|ref|NR_028270.1| Homo sapiens proliferating cell nuclear antigen pseudogene 1 (PCNAP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|255304933|ref|NR_028270.1| Homo sapiens proliferating cell nuclear antigen pseudogene 1 (PCNAP1), non-coding RNA"	Chr4	100081750	100082804	-	359806	NR_028270.1	NA	NA	NA	NA	NA	inter
CUST_22185_PI429285431	4.737564	P	4.876355	P	0.908279988679166	0	lncRNA	23785-1_{1..649}	lnc-CHAF1B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHAF1B-2:2	chr21	 37832588	 37833236	+	lnc-CHAF1B-2	lnc-CHAF1B-2:2	ENSG00000233818.1	AP000695.4	CLDN14	NA	chr21:37832919-37843050	inner
CUST_980_PI429285431	1.7593362	A	0.9079907	A	1.80418277496444	0	lncRNA	969-1_{1..478}	"transcript_id ""ENST00000453878.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453878.1"" | genecode_v17"	chr2	103628237	103628714	+	ENSG00000224850.1	ENST00000453878.1	AC108051.3	AC108051.3-001	NA	NA	NA	inter
LNCA_21_P0010026	5.264015	P	4.1007485	P	2.23963945363883	0	lncRNA	TCONS_00028349	NA	NA	NA	NA	XLOC_013699	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013699), lincRNA [TCONS_00028349]"	chr20:24164380-24164321	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028349	TCONS_00028349	chr20	 24164321	 24164380	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13001_PI429285431	4.5228863	P	3.7807932	A	1.6726007326202	0	lncRNA	14628-1_{1..1605}	lnc-ANKRD30B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD30B-3:1	chr18	 14930444	 14932048	+	lnc-ANKRD30B-3	lnc-ANKRD30B-3:1	XLOC_012636	linc-GREB1L-1	NA	NA	NA	inter
LNCA_21_P0013734	4.7393556	P	3.8544016	P	1.84670573873176	0	lncRNA	ENST00000428958	NA	NA	NA	NA	XLOC_l2_015288	NA	ENST00000428958	THC2679636	NA	"BROAD Institute lincRNA (XLOC_l2_015288), lincRNA [TCONS_l2_00030011]"	chr9:95857686-95857274	hs|9q22.31	Agilent_HUMAN_G3V2	ENST00000428958	ENST00000428958	chr9	 95857274	 95857686	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005927	0.90599287	A	0.9288807	A	0.984260545630536	0	lncRNA	ENST00000520646	NA	NA	NA	NA	XLOC_006726	NA	ENST00000520646	NA	NA	"BROAD Institute lincRNA (XLOC_006726), lincRNA [TCONS_00014631]"	chr8:17666471-17667121	hs|8p22	Agilent_HUMAN_G3V2	ENST00000520646	ENST00000520646	chr8	 17666471	 17667121	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_205_PI429285431	0.9279389	A	0.90403754	A	1.01670515671199	0	lncRNA	195-1_{1..1122}	"transcript_id ""ENST00000417514.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417514.1"" | genecode_v17"	chr1	 31987964	 31989085	+	ENSG00000223907.1	ENST00000417514.1	RP11-439L8.4	RP11-439L8.4-002	NA	NA	NA	inter
CUST_5847_PI429285431	4.0935664	P	4.3520894	P	0.835943302176901	0	lncRNA	5776-1_{1..1014}	"transcript_id ""ENST00000578280.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000578280.1"" | genecode_v17"	chr17	 38673278	 38674291	+	ENSG00000266088.1	ENST00000578280.1	RP5-1028K7.2	RP5-1028K7.2-001	NA	NA	NA	inter
LNCA_21_P0006568	1.7464465	A	1.4524568	A	1.22602610691156	0	lncRNA	THC2515500	NA	NA	NA	NA	XLOC_008039	NA	NA	THC2515500	NA	"BROAD Institute lincRNA (XLOC_008039), lincRNA [TCONS_00017449]"	NA	NA	Agilent_HUMAN_G3V2	THC2515500	THC2515500	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001873	5.1809816	P	4.756638	P	1.34196179565466	0	lncRNA	ENST00000423168	XR_109943	XR_109943	NA	Hs.667940	XLOC_001508	NA	ENST00000423168	THC2623001	NA	"PREDICTED: Homo sapiens hypothetical LOC100507073 (LOC100507073), miscRNA [XR_109943]"	chr2:66922595-66922654	hs|2p14	Agilent_HUMAN_G3V2	ENST00000423168	ENST00000423168	chr2	 66922595	 66922654	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26947_PI429285431	2.281157	A	1.9949417	A	1.21943706268557	0	lncRNA	28468-1_{1..211}	n324028|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053047|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053047|-1.0735400|-0.5731111	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324028|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053047|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053047|-1.0735400|-0.5731111	chr9	 93952483	 93952693	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3360863	2.4018006	A	3.0631542	P	0.632284781180192	0	lncRNA	XR_133450	XR_133450	XR_133450	   644794	Hs.552124	LOC644794	uncharacterized LOC644794	NA	THC2523961	NA	"PREDICTED: Homo sapiens hypothetical LOC644794 (LOC644794), miscRNA [XR_133450]"	chr7:66369785-66369844	hs|7q11.21	Agilent_HUMAN_G3V2	XR_133450	XR_133450	chr7	 66369785	 66369844	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38166_PI429285431	0.8896147	A	0.8901219	A	0.99964849754149	0	lncRNA	39237-1_{1..643}	n381415|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001itt.1||1.4487700|-0.2933251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381415|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001itt.1||1.4487700|-0.2933251	chr10	 27547690	 27548332	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49481_PI429285431	1.1083534	A	0.91550636	A	1.1430171419769	0	lncRNA	53274-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00024567 range=chr6:2851295-2866568 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024567 range=chr6:2851295-2866568 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	  2854295	  2857294	-	NA	NA	NA	NA	SERPINB1	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80chr6:2841295-2842081"	NA	inter
CUST_27886_PI429285431	0.8762496	A	0.89028275	A	0.990320116265266	0	lncRNA	29480-1_{1..407}	n325123|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332189|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332189|-1.1658700|-0.2516243	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325123|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332189|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332189|-1.1658700|-0.2516243	chr2	146074944	146075350	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18707_PI429285431	0.909352	A	0.9272156	A	0.987694238854958	0	lncRNA	20405-1_{1..408}	lnc-MYC-2:24	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYC-2:24	chr8	129108767	129109174	+	lnc-MYC-2	lnc-MYC-2:24	ENSG00000249859	PVT1	NA	NA	NA	inter
CUST_19854_PI429285431	4.7268343	P	4.6053014	P	1.08789015948354	0	lncRNA	21511-1_{1..752}	lnc-ITGAL-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITGAL-2:3	chr16	 30547139	 30547890	+	lnc-ITGAL-2	lnc-ITGAL-2:3	ENSG00000235560.3	AC002310.12	ZNF747	NA	chr16:30542779-30546194	inter
CUST_4147_PI429285431	2.963198	A	3.1775815	P	0.861914398802068	0	lncRNA	4106-1_{1..3000}	"transcript_id ""ENST00000544842.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544842.1"" | genecode_v17"	chr12	  5425127	  5428126	+	ENSG00000256146.1	ENST00000544842.1	RP11-319E16.2	RP11-319E16.2-001	NA	NA	NA	inter
CUST_48388_PI429285431	1.6168123	A	1.1202254	A	1.41087179780322	0	lncRNA	52241-1_{1..410}	hg19_lincRNAsTranscripts_TCONS_l2_00000488 range=chr1:111822687-111825089 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000488 range=chr1:111822687-111825089 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	111822687	111823096	+	NA	NA	NA	NA	CHIA	NA	chr1:111833484-111835089	inter
LNCA_21_P0006825	0.87429726	A	0.8787255	A	0.996935283789093	0	lncRNA	TCONS_00018106	NA	NA	NA	NA	XLOC_008370	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008370), lincRNA [TCONS_00018106]"	chr10:6632968-6633027	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018106	TCONS_00018106	chr10	  6632968	  6633027	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8440_PI429285431	6.0966473	P	6.2243853	P	0.915265369401906	0	lncRNA	10010-1_{1..1483}	lnc-TSPYL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSPYL2-2:1	chrX	 53253927	 53255409	+	lnc-TSPYL2-2	lnc-TSPYL2-2:1	ENSG00000224306	ENST00000452825	IQSEC2	"hg19_refFlat_KDM5C:range=chrX:53222149-532540715'pad=0,hg19_refFlat_KDM5C:range=chrX:53222149-532540715'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_KDM5C:range=chrX:53221926-532540715'pad=0,hg19_refFlat_KDM5C:range=chrX:53221926-532540715'pad=0 3'pad=0 strand=- repeatMasking=none,-102.10chrX:53262058-53264368"	NA	inner
LNCA_21_P0014629	0.87335545	A	0.95312417	A	0.94620932240593	0	lncRNA	ENST00000400710	XR_110819	XR_110819	NA	Hs.574437	FLJ44838	NA	ENST00000400710	THC2483574	NA	"PREDICTED: Homo sapiens hypothetical LOC644767 (FLJ44838), miscRNA [XR_110819]"	chr17_gl000204_random:44702-44643	NA	Agilent_HUMAN_G3V2	ENST00000400710	ENST00000400710	chr17_gl000204_random	    44643	    44702	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49993_PI429285431	7.0021915	P	7.4327517	P	0.741973620234527	0	lncRNA	53730-1_{1..242}	hg19_lincRNAsTranscripts_TCONS_l2_00027547 range=chr8:833265-1054985 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027547 range=chr8:833265-1054985 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	   833265	   833506	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12020_PI429285431	1.8488283	A	0.9184926	A	1.90571938540701	0	lncRNA	13602-1_{1..517}	lnc-POU5F1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-POU5F1-7:1	chr6	 31169653	 31170169	-	lnc-POU5F1-7	lnc-POU5F1-7:1	XLOC_005678	linc-POU5F1-2	NA	NA	NA	inter
CUST_21454_PI429285431	0.87444556	A	0.8741366	A	1.00021417768567	0	lncRNA	23072-2_{3001..4870}	lnc-FAM40A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM40A-2:1	chr1	110619749	110621618	+	lnc-FAM40A-2	lnc-FAM40A-2:1	ENSG00000258686.1	RP4-773N10.5	ALX3	NA	chr1:110606749-110613322	inter
CUST_51264_PI429285431	0.89188385	A	0.89556766	A	0.997449834695118	0	lncRNA	54871-1_{1..1326}	hg19_lincRNAsTranscripts_TCONS_l2_00008488 range=chr15:28986166-28995839 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008488 range=chr15:28986166-28995839 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28986166	 28987491	+	NA	NA	NA	NA	LOC653720	NA	chr15:28976166-28983530	inter
CUST_3747_PI429285431	1.8080562	A	2.4817622	A	0.626894249018738	0	lncRNA	3716-1_{1..555}	"transcript_id ""ENST00000430963.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000430963.1"" | genecode_v17"	chr10	 81563813	 81564367	-	ENSG00000225484.2	ENST00000430963.1	RP11-773D16.1	RP11-773D16.1-008	NA	NA	NA	inter
CUST_925_PI429285431	1.2186747	A	0.878951	A	1.26551420382563	0	lncRNA	915-1_{1..863}	"transcript_id ""ENST00000594329.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594329.1"" | genecode_v17"	chr2	 67314145	 67315007	+	ENSG00000230906.2	ENST00000594329.1	AC023115.1	AC023115.1-002	NA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70"	NA	inter
CUST_48362_PI429285431	0.9172306	A	0.87477446	A	1.0298656468051	0	lncRNA	52218-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00000382 range=chr1:89873151-89892819 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000382 range=chr1:89873151-89892819 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 89873151	 89876150	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008947	0.8749639	A	0.87533426	A	0.999743318958425	0	lncRNA	TCONS_00024418	NA	NA	NA	NA	XLOC_011726	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011726), lincRNA [TCONS_00024418]"	chr16:52641404-52646399	hs|16q12.2	Agilent_HUMAN_G3V2	TCONS_00024418	TCONS_00024418	chr16	 52641404	 52646399	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14546_PI429285431	0.8880874	A	0.9843027	A	0.935483880862301	0	lncRNA	16214-1_{1..267}	lnc-PRMT6-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRMT6-4:1	chr1	106580972	106581238	+	lnc-PRMT6-4	lnc-PRMT6-4:1	XLOC_000327	linc-PRMT6-4	NA	NA	NA	inter
CUST_26287_PI429285431	3.3889914	P	3.6753926	P	0.819944860490544	0	lncRNA	27793-1_{1..2197}	lnc-BAG2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BAG2-2:4	chr6	 57246829	 57249025	+	lnc-BAG2-2	lnc-BAG2-2:4	ENSG00000146143.12	PRIM2	PRIM2	NA	chr6:57236829-57258387	inner
CUST_1026_PI429285431	1.4989159	A	1.5400176	A	0.971912472474179	0	lncRNA	1015-1_{1..412}	"transcript_id ""ENST00000451230.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451230.1"" | genecode_v17"	chr2	111953540	111953951	+	ENSG00000230499.1	ENST00000451230.1	AC108463.1	AC108463.1-001	NA	NA	NA	inter
CUST_10238_PI429285431	2.1082447	A	2.2111404	A	0.931162135997161	0	lncRNA	11762-1_{1..761}	lnc-SMARCAL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMARCAL1-1:1	chr2	217264117	217264877	+	lnc-SMARCAL1-1	lnc-SMARCAL1-1:1	XLOC_001855	linc-SMARCAL1-1	NA	NA	NA	inter
CUST_32304_PI429285431	1.1821231	A	1.1093144	A	1.05176230726845	0	lncRNA	33987-1_{1..2316}	n338880|BC041462|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1306|NULL|-0.5277920|-0.1812868	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338880|BC041462|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1306|NULL|-0.5277920|-0.1812868	chr2	 73181267	 73183582	+	NA	NA	NA	NA	SFXN5	NA	chr2:73171267-73203366	inner
CUST_16408_PI429285431	0.9036838	A	0.9216602	A	0.987617017022473	0	lncRNA	18105-1_{1..606}	lnc-KIAA1217-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1217-1:2	chr10	 23874677	 23875282	+	lnc-KIAA1217-1	lnc-KIAA1217-1:2	XLOC_008413	linc-KIAA1217	NA	NA	NA	inter
CUST_34098_PI429285431	3.5503836	P	3.9356105	P	0.76565857005269	0	lncRNA	35623-1_{1..3000}	n340920|AB040880|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3385|NULL|22.3442000|-0.0715219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340920|AB040880|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3385|NULL|22.3442000|-0.0715219	chr17	 79410849	 79413848	+	NA	NA	NA	NA	BAHCC1	NA	chr17:79400849-79433358	inner
CUST_20939_PI429285431	2.7598853	A	2.4168732	A	1.26840203747174	0	lncRNA	22570-1_{1..453}	lnc-ARHGAP15-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARHGAP15-3:3	chr2	145278321	145278773	+	lnc-ARHGAP15-3	lnc-ARHGAP15-3:3	ENSG00000238057.2	ZEB2-AS1	ZEB2	NA	chr2:145268321-145277958	inter
CUST_47849_PI429285431	1.8116323	A	2.3243668	A	0.700892698359747	0	lncRNA	51754-1_{1..2089}	"gi|410171051|ref|XR_172499.1| PREDICTED: Homo sapiens uncharacterized LOC101060212 (LOC101060212), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171051|ref|XR_172499.1| PREDICTED: Homo sapiens uncharacterized LOC101060212 (LOC101060212), misc_RNA"	NA	NA	NA	NA	NA	XR_172499.1	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50"	NA	Unknown
CUST_20029_PI429285431	1.0973259	A	1.5151154	A	0.748570707495236	0	lncRNA	21682-1_{1..540}	lnc-SLC19A3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC19A3-1:1	chr2	228482194	228482733	-	lnc-SLC19A3-1	lnc-SLC19A3-1:1	ENSG00000236116.1	AC064853.2	C2orf83	NA	chr2:228474806-228492506	inner
CUST_15110_PI429285431	0.8891662	A	0.90409064	A	0.989708490249181	0	lncRNA	16774-2_{3001..6000}	lnc-AC069257.9.1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC069257.9.1-5:2	chr3	195377753	195380752	+	lnc-AC069257.9.1-5	lnc-AC069257.9.1-5:2	XLOC_002996	linc-MUC20-2	NA	"hg19_refFlat_PPP4R2:range=chr3:73046189-731148735'pad=0,hg19_refFlat_PPP4R2:range=chr3:73046189-731148735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	inter
CUST_28827_PI429285431	5.651361	P	5.4649363	P	1.13794016494997	0	lncRNA	30535-2_{3001..3301}	n326240|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000089728|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000089728|0.2068740|-0.2951607	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326240|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000089728|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000089728|0.2068740|-0.2951607	chr1	212062600	212062900	-	NA	NA	NA	NA	INTS7	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70chr1:212113741-212209002"	NA	inter
CUST_47629_PI429285431	1.460836	A	1.9579096	A	0.708542550585704	0	lncRNA	51619-1_{1..921}	"gi|310124216|ref|XR_109769.1| PREDICTED: Homo sapiens uncharacterized LOC100506901, transcript variant 2 (LOC100506901), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124216|ref|XR_109769.1| PREDICTED: Homo sapiens uncharacterized LOC100506901, transcript variant 2 (LOC100506901), misc_RNA"	ChrX	102659705	102660625	+	100506901	XR_109769.2	NA	NA	NA	NA	NA	inter
CUST_42617_PI429285431	6.920274	P	7.434324	P	0.700253891072535	0	lncRNA	45482-1_{1..151}	ENST00000384033 ncrna:snoRNA chromosome:GRCh37:3:39449880:39450030:1 gene:ENSG00000206760 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384033 ncrna:snoRNA chromosome:GRCh37:3:39449880:39450030:1 gene:ENSG00000206760 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	 39449880	 39450030	+	ENSG00000206760	ENST00000384033	NA	NA	RPSA	NA	chr3:39448204-39454033	inner
CUST_1221_PI429285431	5.863368	P	4.7415733	P	2.17617518479647	0	lncRNA	1212-1_{1..556}	"transcript_id ""ENST00000417096.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417096.1"" | genecode_v17"	chr2	208051441	208051996	-	ENSG00000234902.2	ENST00000417096.1	AC007879.2	AC007879.2-002	NA	NA	NA	inter
CUST_41950_PI429285431	5.931678	P	5.8274226	P	1.07493945231785	0	lncRNA	43716-1_{1..73}	ENST00000390136 ncrna:miRNA chromosome:GRCh37:8:48802619:48802691:1 gene:ENSG00000211562 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390136 ncrna:miRNA chromosome:GRCh37:8:48802619:48802691:1 gene:ENSG00000211562 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 48802619	 48802691	+	ENSG00000211562	ENST00000390136	NA	NA	PRKDC	NA	chr8:48792619-48812691	inner
CUST_43936_PI429285431	10.909484	P	10.706656	P	1.15095226510517	0	lncRNA	48646-1_{1..557}	"gi|211938458|ref|NR_024373.1| Homo sapiens uncharacterized LOC541471 (LOC541471), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|211938458|ref|NR_024373.1| Homo sapiens uncharacterized LOC541471 (LOC541471), transcript variant 2, non-coding RNA"	Chr2	112186886	112187442	-	541471	NR_024373.1	NA	NA	NA	NA	NA	inter
CUST_30790_PI429285431	11.9053335	P	11.998647	P	0.937367382853648	0	lncRNA	32577-1_{1..382}	n336673|Z68992|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327629_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327629_03|2.6876400|-0.2575625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336673|Z68992|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327629_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327629_03|2.6876400|-0.2575625	chr2	 89952881	 89953262	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12417_PI429285431	5.3426795	P	5.1565776	P	1.13768558169879	0	lncRNA	14030-1_{1..296}	lnc-CA8-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CA8-5:2	chr8	 61548262	 61548557	-	lnc-CA8-5	lnc-CA8-5:2	XLOC_007095	linc-CA8-3	NA	NA	NA	inter
CUST_3439_PI429285431	1.744834	A	0.9091598	A	1.78469086542345	0	lncRNA	3410-1_{1..1788}	"transcript_id ""ENST00000413352.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000413352.2"" | genecode_v17"	chr9	 82131702	 82133489	-	ENSG00000233086.2	ENST00000413352.2	RP11-375O18.2	RP11-375O18.2-002	NA	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10"	NA	inter
CUST_44911_PI429285431	0.89747226	A	1.0567439	A	0.895477047977406	0	lncRNA	49428-1_{1..3000}	"gi|384081588|ref|NR_047565.1| Homo sapiens coiled-coil domain containing 129 (CCDC129), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384081588|ref|NR_047565.1| Homo sapiens coiled-coil domain containing 129 (CCDC129), transcript variant 4, non-coding RNA"	Chr7	 31556978	 31559977	+	223075	NR_047565.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002652	0.89137167	A	0.90832394	A	0.988318348400019	0	lncRNA	THC2738377	NA	NA	NA	NA	XLOC_002022	NA	NA	THC2738377	NA	"BROAD Institute lincRNA (XLOC_002022), lincRNA [TCONS_00005115]"	chr2:023597737-023597678	hs|2p24.1	Agilent_HUMAN_G3V2	THC2738377	THC2738377	chr2	 23597678	 23597737	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002380	6.2830477	P	6.403781	P	0.919720052050303	0	lncRNA	TCONS_00004095	NA	NA	NA	NA	XLOC_001931	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001931), lincRNA [TCONS_00004095]"	chr2:714159-714100	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00004095	TCONS_00004095	chr2	   714100	   714159	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44611_PI429285431	0.8973994	A	0.9147851	A	0.988021471742956	0	lncRNA	49184-1_{1..3000}	"gi|208609944|ref|NR_001282.2| Homo sapiens protocadherin beta 19 pseudogene (PCDHB19P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|208609944|ref|NR_001282.2| Homo sapiens protocadherin beta 19 pseudogene (PCDHB19P), non-coding RNA"	NA	NA	NA	NA	NA	NR_001282.2	NA	NA	NA	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30"	NA	Unknown
CUST_38055_PI429285431	0.8863946	A	0.9006103	A	0.990194815009638	0	lncRNA	39132-1_{1..2785}	n377626|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030014||0.8192870|-0.4401374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377626|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030014||0.8192870|-0.4401374	chr6	   168170	   170954	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60"	NA	inter
CUST_36923_PI429285431	0.9101193	A	0.92218256	A	0.991673246409874	0	lncRNA	38079-2_{3001..6000}	n345393|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_942|NULL|-1.4191300|-0.3315871	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345393|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_942|NULL|-1.4191300|-0.3315871	chr21	 30759060	 30762059	-	NA	NA	NA	NA	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80"	NA	inter
CUST_39077_PI429285431	5.2253222	P	5.44564	P	0.858376330605996	0	lncRNA	40052-1_{1..1482}	n385565|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aex.2||1.1834900|-0.2555562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385565|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aex.2||1.1834900|-0.2555562	chr9	 68413445	 68414926	+	NA	NA	NA	NA	NA	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-20.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20"	NA	inter
CUST_37874_PI429285431	2.6240966	A	3.02778	A	0.755925834182016	0	lncRNA	38966-2_{3001..6000}	n346410|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1960|NULL|-1.5084800|-0.2385442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346410|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1960|NULL|-1.5084800|-0.2385442	chr14	106052138	106055137	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3323_PI429285431	2.0883741	A	0.8916147	A	2.29224205959268	0	lncRNA	3302-1_{1..849}	"transcript_id ""ENST00000521444.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521444.1"" | genecode_v17"	chr8	135844990	135845838	+	ENSG00000254028.1	ENST00000521444.1	AC083843.2	AC083843.2-001	NA	NA	NA	inter
CUST_48176_PI429285431	1.5124282	A	1.7905954	A	0.824637972306645	0	lncRNA	52040-1_{1..1487}	"gi|397137888|ref|XR_133178.2| PREDICTED: Homo sapiens uncharacterized LOC100293044 (LOC100293044), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397137888|ref|XR_133178.2| PREDICTED: Homo sapiens uncharacterized LOC100293044 (LOC100293044), misc_RNA"	NA	NA	NA	NA	NA	XR_133178.2	NA	NA	NA	NA	NA	Unknown
CUST_20832_PI429285431	0.8812405	A	0.88336545	A	0.998528181088075	0	lncRNA	22463-1_{1..321}	lnc-SKA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SKA2-1:1	chr17	 57281094	 57281414	-	lnc-SKA2-1	lnc-SKA2-1:1	ENSG00000265415.1	CTD-2510F5.4	PRR11	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr17:57271094-57284070"	NA	inner
CUST_13312_PI429285431	0.8870027	A	2.3430946	A	0.364479126561957	0	lncRNA	14947-1_{1..3000}	lnc-PLA2R1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLA2R1-1:1	chr2	160788687	160791686	-	lnc-PLA2R1-1	lnc-PLA2R1-1:1	XLOC_002368	linc-LY75	PLA2R1	NA	chr2:160797260-160802478	inter
LNCA_21_P0011172	0.87595713	A	0.88251007	A	0.995468148085917	0	lncRNA	TCONS_l2_00007056	NA	NA	NA	NA	XLOC_l2_003888	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003888), lincRNA [TCONS_l2_00007056]"	chr13:19836357-19836298	hs|13q12.11	Agilent_HUMAN_G3V2	TCONS_l2_00007056	TCONS_l2_00007056	chr13	 19836298	 19836357	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5505_PI429285431	1.4076412	A	1.0350156	A	1.2947069602767	0	lncRNA	5436-2_{3001..3971}	"transcript_id ""ENST00000568752.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568752.1"" | genecode_v17"	chr16	 33347309	 33348279	-	ENSG00000261200.1	ENST00000568752.1	RP11-989E6.10	RP11-989E6.10-001	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20"	NA	inter
CUST_40819_PI429285431	4.5014315	P	4.4708548	P	1.02142034461575	0	lncRNA	41523-1_{1..3000}	n410587|NR_037850|lncRNA|Homosapiens||RefGeneNoncode|NR_037850||-1.1374300|-0.2660481	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n410587|NR_037850|lncRNA|Homosapiens||RefGeneNoncode|NR_037850||-1.1374300|-0.2660481	chr1	213991094	213994093	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9061_PI429285431	0.8771197	A	0.8839825	A	0.995254365804042	0	lncRNA	10585-1_{1..625}	lnc-ALG12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALG12-1:1	chr22	 50280699	 50281323	-	lnc-ALG12-1	lnc-ALG12-1:1	ENSG00000246355	ENST00000502014	ZBED4	"hg19_refFlat_ZBED4:range=chr22:50277311-502808265'pad=0,hg19_refFlat_ZBED4:range=chr22:50277311-502808265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90chr22:50270699-50283726"	NA	inner
LNCA_21_P0006301	1.2487867	A	0.877307	A	1.29367901214983	0	lncRNA	TCONS_00016438	NA	NA	NA	NA	XLOC_007806	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007806), lincRNA [TCONS_00016438]"	chr9:102303537-102303478	hs|9q22.33	Agilent_HUMAN_G3V2	TCONS_00016438	TCONS_00016438	chr9	102303478	102303537	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37998_PI429285431	2.5251458	A	2.0800846	A	1.36137186549609	0	lncRNA	39085-1_{1..393}	n346558|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2108|NULL|-1.2956900|-0.1062892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346558|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2108|NULL|-1.2956900|-0.1062892	chr5	177053437	177053829	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10135_PI429285431	0.888043	A	0.9326159	A	0.969576811035443	0	lncRNA	11657-1_{1..1719}	lnc-SUSD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUSD4-1:1	chr1	223565002	223566720	-	lnc-SUSD4-1	lnc-SUSD4-1:1	XLOC_001220	linc-SUSD4	C1orf65	NA	chr1:223566715-223568812	inter
LNCA_21_P0003713	1.6989803	A	1.8812089	A	0.881340495404326	0	lncRNA	TCONS_00008412	NA	NA	NA	NA	XLOC_003857	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003857), lincRNA [TCONS_00008412]"	chr4:3064309-3064250	hs|4p16.3	Agilent_HUMAN_G3V2	TCONS_00008412	TCONS_00008412	chr4	  3064250	  3064309	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38082_PI429285431	0.87299764	A	2.2818491	A	0.376611390602069	0	lncRNA	39158-1_{1..1111}	n381071|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001baw.1||-1.1116400|-0.2299238	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381071|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001baw.1||-1.1116400|-0.2299238	chr1	 18701063	 18702173	+	NA	NA	NA	NA	IGSF21	NA	chr1:18691063-18704977	inner
CUST_24008_PI429285431	5.472597	P	5.5895033	P	0.92216300851012	0	lncRNA	25561-1_{1..1546}	lnc-WISP1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-WISP1-2:2	chr8	134585230	134586775	+	lnc-WISP1-2	lnc-WISP1-2:2	ENSG00000261220.1	RP11-629O1.2	ST3GAL1	NA	chr8:134575230-134584183	inter
LNCA_21_P0014448	0.87365454	A	0.87411344	A	0.999681965342588	0	lncRNA	ENST00000508936	XR_109842	XR_109842	NA	Hs.519005	LOC100505525	NA	ENST00000508936	THC2606392	NA	"PREDICTED: Homo sapiens hypothetical LOC100505525 (LOC100505525), miscRNA [XR_109842]"	chr4:146418375-146418316	hs|4q31.21	Agilent_HUMAN_G3V2	ENST00000508936	ENST00000508936	chr4	146418316	146418375	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13170_PI429285431	3.1467326	P	3.3956242	P	0.841542711034527	0	lncRNA	14799-1_{1..3000}	lnc-ITPR3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITPR3-1:1	chr6	 33882234	 33885233	+	lnc-ITPR3-1	lnc-ITPR3-1:1	XLOC_005263	linc-HMGA1-2	NA	NA	NA	inter
CUST_36614_PI429285431	0.89119923	A	0.903108	A	0.991779444739139	0	lncRNA	37807-1_{1..1471}	n345110|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_659|NULL|-1.3174400|-0.3771197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345110|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_659|NULL|-1.3174400|-0.3771197	chr10	 28813107	 28814577	-	NA	NA	NA	NA	WAC	NA	chr10:28821427-28830522	inter
CUST_231_PI429285431	3.6973207	P	1.751968	A	3.85131920092515	0	lncRNA	222-1_{1..2177}	"transcript_id ""ENST00000602943.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602943.1"" | genecode_v17"	chr1	 53708036	 53710212	-	ENSG00000270172.1	ENST00000602943.1	RP5-1024G6.8	RP5-1024G6.8-001	LRP8	NA	chr1:53708036-53720212	inner
CUST_27037_PI429285431	4.0279975	P	4.410128	P	0.767303637868124	0	lncRNA	28568-1_{1..443}	n324143|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051934|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051934|-1.1812000|-0.2583967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324143|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051934|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051934|-1.1812000|-0.2583967	chr9	 22193988	 22194430	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21719_PI429285431	1.0072045	A	1.0886514	A	0.945109307277952	0	lncRNA	23329-1_{1..662}	lnc-TAF15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TAF15-1:1	chr17	 34212710	 34213371	+	lnc-TAF15-1	lnc-TAF15-1:1	ENSG00000237805.1	AC015849.2	CCL5	NA	chr17:34202710-34207377	inter
CUST_13567_PI429285431	5.2473464	P	5.9072766	P	0.63290891743681	0	lncRNA	15208-1_{1..443}	lnc-CRISPLD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRISPLD2-1:1	chr16	 84971541	 84971983	+	lnc-CRISPLD2-1	lnc-CRISPLD2-1:1	XLOC_011806	linc-KIAA0513	NA	NA	NA	inter
CUST_6163_PI429285431	1.1113968	A	1.1795194	A	0.953878486657896	0	lncRNA	6089-1_{1..556}	"transcript_id ""ENST00000599934.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599934.1"" | genecode_v17"	chr18	 39101302	 39101857	-	ENSG00000267313.2	ENST00000599934.1	RP11-142I20.1	RP11-142I20.1-006	NA	NA	NA	inter
CUST_15720_PI429285431	1.3502543	A	1.2699993	A	1.05720488768777	0	lncRNA	17405-2_{3001..6000}	lnc-BTBD10-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTBD10-3:8	chr11	 13014003	 13017002	-	lnc-BTBD10-3	lnc-BTBD10-3:8	XLOC_009378	linc-DKK3-3	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30"	NA	inter
CUST_47753_PI429285431	1.5312262	A	0.9045654	A	1.54398720814401	0	lncRNA	51695-2_{3001..6000}	"gi|385137080|ref|NR_047618.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 48, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137080|ref|NR_047618.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 48, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047618.1	NA	NA	NA	NA	NA	inter
CUST_26526_PI429285431	1.7914015	A	1.2766021	A	1.4287954586005	0	lncRNA	28033-1_{1..486}	lnc-TMEM74-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM74-1:3	chr8	109930766	109931251	-	lnc-TMEM74-1	lnc-TMEM74-1:3	ENSG00000253796.1	RP11-1084E5.1	NA	NA	NA	inter
LNCA_21_P0005982	4.0697827	P	4.2609754	P	0.875881316257645	0	lncRNA	TCONS_00015544	NA	NA	NA	NA	XLOC_007254	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007254), lincRNA [TCONS_00015544]"	chr8:144796020-144795961	hs|8q24.3	Agilent_HUMAN_G3V2	TCONS_00015544	TCONS_00015544	chr8	144795961	144796020	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18923_PI429285431	1.2361109	A	0.9670414	A	1.20503036440282	0	lncRNA	20614-1_{1..1793}	lnc-ITGB3BP-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-ITGB3BP-2:2	chr1	 63782729	 63784521	-	lnc-ITGB3BP-2	lnc-ITGB3BP-2:2	ENSG00000224209	RP11-335E6.1	FOXD3	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70chr1:63788730-63790797"	NA	inter
CUST_2772_PI429285431	0.9046639	A	0.8919671	A	1.00883959159044	0	lncRNA	2755-1_{1..589}	"transcript_id ""ENST00000439046.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439046.1"" | genecode_v17"	chr7	 17474101	 17474689	-	ENSG00000236039.1	ENST00000439046.1	AC019117.2	AC019117.2-001	NA	NA	NA	inter
CUST_23593_PI429285431	2.3762145	A	0.88622475	A	2.80886979506327	0	lncRNA	25160-1_{1..3000}	lnc-ZNF765-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF765-1:1	chr19	 53957901	 53960900	+	lnc-ZNF765-1	lnc-ZNF765-1:1	ENSG00000160336.10	ZNF761	ZNF813	NA	chr19:53966222-53971514	inner
LNCA_21_P0001535	0.9956677	A	0.87650996	A	1.08610060085137	0	lncRNA	TCONS_00001564	NA	NA	NA	NA	XLOC_000904	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000904), lincRNA [TCONS_00001564]"	chr1:88938061-88938002	hs|1p22.2	Agilent_HUMAN_G3V2	TCONS_00001564	TCONS_00001564	chr1	 88938002	 88938061	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33345_PI429285431	6.247063	P	6.4924498	P	0.843589591567878	0	lncRNA	34927-1_{1..3000}	n340064|D87465|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2519|NULL|8.6420300|-0.1601822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340064|D87465|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2519|NULL|8.6420300|-0.1601822	chr10	 73818792	 73821791	-	NA	NA	NA	NA	ASCC1	NA	chr10:73856274-73858767	inner
LNCA_21_P0010050	7.1006417	P	7.2067723	P	0.929076565767657	0	lncRNA	TCONS_00028425	NA	NA	NA	NA	XLOC_013777	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013777), lincRNA [TCONS_00028425]"	chr20:47033323-47033264	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028425	TCONS_00028425	chr20	 47033264	 47033323	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37452_PI429285431	4.1958957	P	3.4293432	A	1.70119969332272	0	lncRNA	38551-1_{1..2636}	n345902|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1451|NULL|-1.3778800|-0.2708561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345902|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1451|NULL|-1.3778800|-0.2708561	chr8	132324623	132327258	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007896	11.273556	P	11.176119	P	1.06987110845721	0	lncRNA	TCONS_00021415	NA	NA	NA	NA	XLOC_010215	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010215), lincRNA [TCONS_00021415]"	chr12:119212381-119212322	hs|12q24.23	Agilent_HUMAN_G3V2	TCONS_00021415	TCONS_00021415	chr12	119212322	119212381	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45297_PI429285431	5.652352	P	4.426335	P	2.33920289194361	0	lncRNA	49742-1_{1..3000}	"gi|378744176|ref|NR_046386.1| Homo sapiens ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase (UHRF2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378744176|ref|NR_046386.1| Homo sapiens ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase (UHRF2), transcript variant 2, non-coding RNA"	Chr9	  6413151	  6416150	+	115426	NR_046386.1	NA	NA	NA	NA	NA	inter
CUST_45840_PI429285431	8.476673	P	7.6818204	P	1.73490011068766	0	lncRNA	50172-3_{6001..6941}	"gi|226437604|ref|NR_027473.1| Homo sapiens lysine (K)-specific demethylase 2A (KDM2A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226437604|ref|NR_027473.1| Homo sapiens lysine (K)-specific demethylase 2A (KDM2A), transcript variant 2, non-coding RNA"	Chr11	 66892740	 66893680	+	22992	NR_027473.1	NA	NA	NA	NA	NA	inter
CUST_13845_PI429285431	0.89540356	A	0.90642166	A	0.992391924094394	0	lncRNA	15488-1_{1..1189}	lnc-LMO2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LMO2-1:1	chr11	 33843540	 33844728	-	lnc-LMO2-1	lnc-LMO2-1:1	XLOC_009411	linc-FBXO3	NA	NA	NA	inter
LNCA_21_P0010275	2.1207688	A	1.2522416	A	1.82579805145393	0	lncRNA	TCONS_00029109	NA	NA	NA	NA	XLOC_014050	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014050), lincRNA [TCONS_00029109]"	chr21:32361384-32333915	hs|21q22.11	Agilent_HUMAN_G3V2	TCONS_00029109	TCONS_00029109	chr21	 32333915	 32361384	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37949_PI429285431	3.2008343	P	2.9804738	A	1.16502466594881	0	lncRNA	39039-1_{1..644}	n346496|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2046|NULL|-1.3504300|-0.0835882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346496|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2046|NULL|-1.3504300|-0.0835882	chr2	 87276711	 87277354	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15187_PI429285431	2.8334985	A	2.6678095	A	1.12170165061726	0	lncRNA	16852-1_{1..328}	lnc-AC006455.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC006455.1-3:2	chr7	 62855640	 62855967	+	lnc-AC006455.1-3	lnc-AC006455.1-3:2	XLOC_006116	linc-ZNF727-7	LOC100506447	NA	chr7:62857832-62859970	inter
CUST_16582_PI429285431	1.065192	A	1.2119391	A	0.903284839326099	0	lncRNA	18283-1_{1..454}	lnc-ZNF366-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF366-2:3	chr5	 71956394	 71956847	-	lnc-ZNF366-2	lnc-ZNF366-2:3	XLOC_004874	linc-ZNF366-5	NA	NA	NA	inter
CUST_15355_PI429285431	3.9345746	P	3.4953752	P	1.35585171092545	0	lncRNA	17037-1_{1..658}	lnc-PQLC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PQLC1-1:1	chr18	 77439206	 77439863	-	lnc-PQLC1-1	lnc-PQLC1-1:1	XLOC_012905	linc-MBP-3	CTDP1	NA	chr18:77439801-77449308	inter
LNCA_21_P0001579	3.6692572	P	4.53298	P	0.549532686074548	0	lncRNA	TCONS_00001675	NA	NA	NA	NA	XLOC_001013	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001013), lincRNA [TCONS_00001675]"	chr1:149993110-149993051	hs|1q21.2	Agilent_HUMAN_G3V2	TCONS_00001675	TCONS_00001675	chr1	149993051	149993110	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47040_PI429285431	11.0286255	P	11.648924	P	0.650536314947809	0	lncRNA	51129-1_{1..1614}	"gi|284005314|ref|NR_033250.1| Homo sapiens lysophospholipase II pseudogene (LOC388499), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|284005314|ref|NR_033250.1| Homo sapiens lysophospholipase II pseudogene (LOC388499), non-coding RNA"	Chr19	  7943504	  7945117	-	388499	NR_033250.1	NA	NA	NA	NA	NA	inter
CUST_48802_PI429285431	2.3680308	A	1.3498513	A	2.02536159435035	0	lncRNA	52640-1_{1..606}	hg19_lincRNAsTranscripts_TCONS_l2_00014321 range=chr2:241845860-241859705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014321 range=chr2:241845860-241859705 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	241845860	241846465	+	NA	NA	NA	NA	LOC728763	NA	chr2:241868593-241869705	inter
LNCA_21_P0014403	0.89306223	A	0.9105313	A	0.987964377923551	0	lncRNA	XR_109620	XR_109620	XR_109620	NA	Hs.722870	LOC100506069	uncharacterized LOC100506069	NA	THC2630098	NA	"PREDICTED: Homo sapiens hypothetical LOC100506069 (LOC100506069), miscRNA [XR_109620]"	chr20:47099703-47100227	hs|20q13.13	Agilent_HUMAN_G3V2	XR_109620	XR_109620	chr20	 47099703	 47100227	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4166_PI429285431	0.9201659	A	0.92881817	A	0.994020651329525	0	lncRNA	4123-1_{1..506}	"transcript_id ""ENST00000539328.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539328.1"" | genecode_v17"	chr12	 11365126	 11365631	+	ENSG00000256373.1	ENST00000539328.1	RP11-711K1.8	RP11-711K1.8-001	NA	NA	NA	inter
CUST_37985_PI429285431	0.91395885	A	0.9203368	A	0.995588899548445	0	lncRNA	39072-1_{1..1578}	n346540|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2090|NULL|-1.2841500|-0.2412503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346540|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2090|NULL|-1.2841500|-0.2412503	chr4	185229942	185231519	-	NA	NA	NA	NA	LOC391722	NA	chr4:185220282-185238554	inter
CUST_19229_PI429285431	1.0681634	A	0.90629756	A	1.1187330622734	0	lncRNA	20899-1_{1..745}	lnc-RAB18-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAB18-1:2	chr10	 28056287	 28057031	+	lnc-RAB18-1	lnc-RAB18-1:2	ENSG00000230500.1	RP11-360I20.2	NA	NA	NA	inter
LNCA_21_P0003115	1.3861941	A	2.5827672	A	0.436310440021994	0	lncRNA	TCONS_00006505	NA	NA	NA	NA	XLOC_003111	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003111), lincRNA [TCONS_00006505]"	chr3:46877551-46877492	hs|3p21.31	Agilent_HUMAN_G3V2	TCONS_00006505	TCONS_00006505	chr3	 46877492	 46877551	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14780_PI429285431	5.0569005	P	5.1769013	P	0.920187140364636	0	lncRNA	16441-1_{1..511}	lnc-LMO4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LMO4-1:1	chr1	 88427515	 88428025	+	lnc-LMO4-1	lnc-LMO4-1:1	XLOC_000280	linc-PKN2-2	NA	NA	NA	inter
CUST_30801_PI429285431	2.599567	A	2.173903	A	1.3431905636296	0	lncRNA	32588-1_{1..342}	n336695|Z70659|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327943|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327943|1.5877700|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336695|Z70659|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327943|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327943|1.5877700|-1.0000000	chr14	106478110	106478451	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4593_PI429285431	5.4474187	P	5.4234176	P	1.0167754485442	0	lncRNA	4542-1_{1..511}	"transcript_id ""ENST00000414480.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414480.1"" | genecode_v17"	chr13	 38055604	 38056114	-	ENSG00000230390.1	ENST00000414480.1	RP11-14O22.1	RP11-14O22.1-001	NA	NA	NA	inter
CUST_44833_PI429285431	4.243017	P	4.458928	P	0.861002302017904	0	lncRNA	49362-1_{1..718}	"gi|310119865|ref|XR_110190.1| PREDICTED: Homo sapiens SYNE1 antisense RNA 1 (SYNE1-AS1), ncRNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310119865|ref|XR_110190.1| PREDICTED: Homo sapiens SYNE1 antisense RNA 1 (SYNE1-AS1), ncRNA"	NA	NA	NA	NA	NA	XR_110190.1	NA	NA	NA	"hg19_refFlat_SYNE1:range=chr6:152443571-1529494665'pad=0,hg19_refFlat_SYNE1:range=chr6:152443571-1529494665'pad=0 3'pad=0 strand=- repeatMasking=none,-94.10"	NA	Unknown
CUST_19746_PI429285431	1.364964	A	0.91293514	A	1.3679626686654	0	lncRNA	21404-1_{1..647}	lnc-KRT81-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KRT81-2:1	chr12	 52672725	 52673371	-	lnc-KRT81-2	lnc-KRT81-2:1	ENSG00000257830.1	RP11-845M18.7	KRT81	NA	chr12:52679697-52682940	inter
CUST_19423_PI429285431	5.612534	P	5.631987	P	0.986606707007605	0	lncRNA	21084-1_{1..3000}	lnc-ZNF843-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF843-2:1	chr16	 31468032	 31471031	-	lnc-ZNF843-2	lnc-ZNF843-2:1	ENSG00000260267.1	RP11-452L6.5	ARMC5	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ARMC5:range=chr16:31470846-314765225'pad=0,hg19_refFlat_ARMC5:range=chr16:31470846-314765225'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-57.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-55.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-18.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ARMC5:range=chr16:31470846-314782105'pad=0,hg19_refFlat_ARMC5:range=chr16:31470846-314782105'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70chr16:31470317-31478488"	NA	inner
CUST_26642_PI429285431	11.519382	P	11.695417	P	0.885132290875754	0	lncRNA	28144-1_{1..562}	lnc-C17orf61-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf61-1:3	chr17	  7307319	  7307880	-	lnc-C17orf61-1	lnc-C17orf61-1:3	ENSG00000262481.1	C17orf61-PLSCR3	C17orf61	NA	chr17:7306293-7307450	inner
CUST_8213_PI429285431	4.351956	P	4.4351645	P	0.943955987651917	0	lncRNA	9806-1_{1..3000}	lnc-C20orf118-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C20orf118-1:1	chr20	 35421523	 35424522	+	lnc-C20orf118-1	lnc-C20orf118-1:1	ENSG00000250861	ENST00000509795	KIAA0889	"hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_SOGA1:range=chr20:35414888-354917475'pad=0,hg19_refFlat_SOGA1:range=chr20:35414888-354917475'pad=0 3'pad=0 strand=- repeatMasking=none,-108.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-56.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-54.50;hg19_refFlat_SOGA1:range=chr20:35406177-354678175'pad=0,hg19_refFlat_SOGA1:range=chr20:35406177-354678175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80chr20:35411523-35433205"	NA	inner
CUST_48854_PI429285431	1.0429938	A	0.91436255	A	1.09325598770129	0	lncRNA	52690-1_{1..419}	hg19_lincRNAsTranscripts_TCONS_l2_00019630 range=chr3:180465938-180528245 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019630 range=chr3:180465938-180528245 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	180465938	180466356	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45908_PI429285431	0.9172486	A	0.9861457	A	0.953366541583909	0	lncRNA	50218-1_{1..519}	"gi|377823727|ref|NR_046370.1| Homo sapiens uncharacterized LOC100131626 (LOC100131626), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|377823727|ref|NR_046370.1| Homo sapiens uncharacterized LOC100131626 (LOC100131626), transcript variant 2, non-coding RNA"	NW_003871072.2	     6658	     7176	-	100131626	NR_046370.1	NA	NA	NA	"hg19_refFlat_UBE4A:range=chr11:118235796-1182671555'pad=0,hg19_refFlat_UBE4A:range=chr11:118235796-1182671555'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90"	NA	Unknown
CUST_24929_PI429285431	0.87795144	A	0.87985265	A	0.998683049590146	0	lncRNA	26469-1_{1..486}	lnc-AC018816.3.1-8:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC018816.3.1-8:3	chr3	  6847076	  6847561	-	lnc-AC018816.3.1-8	lnc-AC018816.3.1-8:3	ENSG00000226258.2	GRM7-AS3	NA	NA	NA	inter
CUST_34842_PI429285431	0.90489393	A	1.6202015	A	0.609075268460139	0	lncRNA	36270-1_{1..326}	n341746|BC069422|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4219|NULL|1.4383400|-0.0469621	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341746|BC069422|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4219|NULL|1.4383400|-0.0469621	chr9	108424777	108425102	+	NA	NA	NA	NA	TAL2	NA	chr9:108424738-108425393	inner
CUST_36870_PI429285431	4.589113	P	4.6553454	P	0.955129064727128	0	lncRNA	38029-1_{1..602}	n345339|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_888|NULL|-1.3762400|-0.3778209	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345339|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_888|NULL|-1.3762400|-0.3778209	chr16	 86616485	 86617086	+	NA	NA	NA	NA	FOXL1	NA	chr16:86612115-86615304	inter
CUST_29269_PI429285431	3.9600067	P	4.3304725	P	0.77353270752417	0	lncRNA	31020-1_{1..204}	n332375|EU159199|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000557579|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000557579|-0.1941110|-0.0322958	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332375|EU159199|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000557579|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000557579|-0.1941110|-0.0322958	chr8	 13133759	 13133962	-	NA	NA	NA	NA	DLC1	NA	chr8:13123759-13143963	inner
CUST_1397_PI429285431	0.8937135	A	0.8932138	A	1.00034642563763	0	lncRNA	1386-1_{1..360}	"transcript_id ""ENST00000488348.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000488348.1"" | genecode_v17"	chr3	 84934087	 84934446	+	ENSG00000242339.1	ENST00000488348.1	RP11-735B13.2	RP11-735B13.2-001	NA	NA	NA	inter
CUST_37428_PI429285431	5.1656237	P	5.194993	P	0.979848562332853	0	lncRNA	38532-2_{3001..6000}	n345881|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1430|NULL|-1.3048800|-0.2856205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n345881|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1430|NULL|-1.3048800|-0.2856205	chr12	105866638	105869637	+	NA	NA	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-18.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00"	NA	inter
CUST_20749_PI429285431	0.88729256	A	0.89874774	A	0.992091313812108	0	lncRNA	22383-1_{1..480}	lnc-RBM17-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBM17-2:1	chr10	  6078148	  6078627	+	lnc-RBM17-2	lnc-RBM17-2:1	ENSG00000229664.1	RP11-536K7.5	IL2RA	"hg19_refFlat_IL2RA:range=chr10:6054835-61041145'pad=0,hg19_refFlat_IL2RA:range=chr10:6054835-61041145'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20chr10:6068148-6088390"	NA	inner
CUST_48332_PI429285431	2.915508	A	2.5731099	A	1.26786233009975	0	lncRNA	52188-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00001211 range=chr1:47333329-47349818 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001211 range=chr1:47333329-47349818 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 47336329	 47339328	-	NA	NA	NA	NA	CYP4A11	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.14;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.60;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr1:47357206-47359818"	NA	inter
CUST_36732_PI429285431	0.88301945	A	0.89249706	A	0.993452152543322	0	lncRNA	37908-1_{1..935}	n345215|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_764|NULL|-1.3353200|-0.2796620	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345215|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_764|NULL|-1.3353200|-0.2796620	chr13	 38624953	 38625887	-	NA	NA	NA	NA	NA	"hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70"	NA	inter
LNCA_33_P3249743	3.74886	P	3.8421	P	0.937415139486706	0	lncRNA	ENST00000429274	XR_132593	XR_132593	NA	Hs.370479	NA	NA	ENST00000429274	THC2484463	NA	"PREDICTED: Homo sapiens hypothetical FLJ38723 (FLJ38723), miscRNA [XR_132593]"	chr15:62535232-62535089	hs|15q22.2	Agilent_HUMAN_G3V2	ENST00000429274	ENST00000429274	chr15	 62535089	 62535232	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49132_PI429285431	2.11005	A	1.8715538	A	1.17976228949605	0	lncRNA	52959-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00020645 range=chr4:90602647-90615273 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020645 range=chr4:90602647-90615273 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 90602647	 90605646	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8549_PI429285431	10.109555	P	9.916138	P	1.14346879858928	0	lncRNA	10108-1_{1..1177}	lnc-TRPV2-1:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRPV2-1:16	chr17	 16344659	 16345835	+	lnc-TRPV2-1	lnc-TRPV2-1:16	ENSG00000175061	NCRNA00188	C17orf76	NA	chr17:16345328-16355332	inner
CUST_11845_PI429285431	5.109915	P	6.0169187	P	0.533291522710922	0	lncRNA	13422-1_{1..382}	lnc-SIK1-4:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIK1-4:12	chr21	 44891392	 44891773	-	lnc-SIK1-4	lnc-SIK1-4:12	XLOC_014105	linc-SIK1-2	NA	NA	NA	inter
CUST_32873_PI429285431	1.8725928	A	1.3848814	A	1.40221871955975	0	lncRNA	34502-1_{1..839}	n339539|BC009635|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1980|NULL|-0.1228710|-0.1195689	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339539|BC009635|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1980|NULL|-0.1228710|-0.1195689	chr21	 46414276	 46415114	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47798_PI429285431	0.8807656	A	0.8806945	A	1.00004928397895	0	lncRNA	51719-1_{1..2443}	"gi|410170868|ref|XR_171112.1| PREDICTED: Homo sapiens uncharacterized LOC100271840 (LOC100271840), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170868|ref|XR_171112.1| PREDICTED: Homo sapiens uncharacterized LOC100271840 (LOC100271840), misc_RNA"	NT_113923.1	    65342	    67784	+	100271840	XR_171112.2	NA	NA	NA	NA	NA	Unknown
CUST_49047_PI429285431	0.884273	A	0.8914496	A	0.995037911980952	0	lncRNA	52875-1_{1..412}	hg19_lincRNAsTranscripts_TCONS_l2_00021371 range=chr4:158850634-158951637 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021371 range=chr4:158850634-158951637 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	158850634	158851045	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6306_PI429285431	4.920809	P	4.8803353	P	1.02845145690309	0	lncRNA	6230-1_{1..359}	"transcript_id ""ENST00000589066.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589066.1"" | genecode_v17"	chr19	  4470498	  4470856	-	ENSG00000267011.1	ENST00000589066.1	CTB-50L17.16	CTB-50L17.16-002	HDGFRP2	NA	chr19:4472255-4481490	inter
CUST_40275_PI429285431	11.219305	P	11.476156	P	0.836912673665424	0	lncRNA	41084-2_{3001..3156}	n408222|NR_028387|lncRNA|Homosapiens||RefGeneNoncode|NR_028387||7.0566900|-0.1546552	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408222|NR_028387|lncRNA|Homosapiens||RefGeneNoncode|NR_028387||7.0566900|-0.1546552	chr6	 33262430	 33262585	-	NA	NA	NA	NA	RGL2	NA	chr6:33259431-33267176	inner
CUST_16230_PI429285431	0.8962813	A	0.887224	A	1.00629779016897	0	lncRNA	17937-1_{1..360}	lnc-MEST-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MEST-1:1	chr7	130082944	130083303	+	lnc-MEST-1	lnc-MEST-1:1	XLOC_006249	linc-MEST-1	TSGA14	NA	chr7:130072944-130080854	inter
CUST_19052_PI429285431	2.4756188	A	1.4786671	A	1.99577862018958	0	lncRNA	20743-1_{1..488}	lnc-SPATA21-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPATA21-2:3	chr1	 16935003	 16935490	-	lnc-SPATA21-2	lnc-SPATA21-2:3	ENSG00000219481	NBPF1	NBPF1	NA	chr1:16925003-16939982	inner
CUST_10831_PI429285431	10.1074505	P	10.254203	P	0.903281458341992	0	lncRNA	12367-1_{1..372}	lnc-CIB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CIB2-1:1	chr15	 78441450	 78441821	-	lnc-CIB2-1	lnc-CIB2-1:1	XLOC_011537	linc-CIB2	IDH3A	NA	chr15:78441719-78451489	inter
CUST_38949_PI429285431	7.708737	P	7.7100406	P	0.999096821446922	0	lncRNA	39936-1_{1..1403}	n385122|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tdd.2||2.3161800|-0.1923470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385122|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tdd.2||2.3161800|-0.1923470	chr7	 32956427	 32957829	-	NA	NA	NA	NA	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-54.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80"	NA	inter
CUST_35343_PI429285431	0.9023466	A	0.90971625	A	0.994904772812993	0	lncRNA	36752-1_{1..1674}	n342384|AK025105|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4876|NULL|-0.3343370|-0.2979177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342384|AK025105|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4876|NULL|-0.3343370|-0.2979177	chr2	  9394524	  9396197	-	NA	NA	NA	NA	ASAP2	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10chr2:9384524-9406312"	NA	inner
CUST_23843_PI429285431	7.4367104	P	6.93233	P	1.41851401048436	0	lncRNA	25406-1_{1..587}	lnc-IRX3-4:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IRX3-4:12	chr16	 54962406	 54962992	-	lnc-IRX3-4	lnc-IRX3-4:12	ENSG00000245694.4	CRNDE	IRX5	NA	chr16:54965111-54968397	inter
CUST_9674_PI429285431	0.88382953	A	0.8977661	A	0.990386414627449	0	lncRNA	11191-1_{1..1128}	lnc-KIFC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIFC2-1:1	chr8	145704970	145706097	+	lnc-KIFC2-1	lnc-KIFC2-1:1	XLOC_006962	linc-PPP1R16A	KIFC2	NA	chr8:145694970-145699499	inter
LNCA_24_P315014	1.8158228	A	0.86872625	A	1.92798863864219	0	lncRNA	XR_113307	XR_113307	XR_113307	   139629	Hs.381355	XAGE-4	XAGE-4 protein	NA	NA	NA	"PREDICTED: Homo sapiens XAGE-4 protein (XAGE-4), miscRNA [XR_113307]"	chrX:55681147-55681119	hs|Xp11.21	Agilent_HUMAN_G3V2	XR_113307	XR_113307	chrX	 55681119	 55681147	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002635	0.89878374	A	0.9221575	A	0.983929081825116	0	lncRNA	TCONS_00005049	NA	NA	NA	NA	XLOC_001924	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001924), lincRNA [TCONS_00005049]"	chr2:243002713-243002772	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_00005049	TCONS_00005049	chr2	243002713	243002772	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51570_PI429285431	1.0471045	A	0.90453994	A	1.10386562373102	0	lncRNA	55135-1_{1..408}	hg19_lincRNAsTranscripts_TCONS_l2_00011531 range=chr17:19484740-19494003 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011531 range=chr17:19484740-19494003 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 19484740	 19485147	+	NA	NA	NA	NA	SLC47A1	NA	chr17:19474740-19482346	inter
CUST_3542_PI429285431	3.142342	P	3.5030465	P	0.778784189191711	0	lncRNA	3512-1_{1..497}	"transcript_id ""ENST00000594418.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594418.1"" | genecode_v17"	chr9	131766781	131767277	-	ENSG00000267834.1	ENST00000594418.1	RP11-167N5.5	RP11-167N5.5-001	NUP188	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30chr9:131756781-131769374"	NA	inner
CUST_20773_PI429285431	0.9009527	A	1.5752654	A	0.626630675103703	0	lncRNA	22406-1_{1..809}	lnc-FAM110A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM110A-1:1	chr20	   837464	   838272	+	lnc-FAM110A-1	lnc-FAM110A-1:1	ENSG00000251390.1	RP11-276A18.2	NA	NA	NA	inter
CUST_4863_PI429285431	0.9028551	A	0.92300034	A	0.986133422785179	0	lncRNA	4806-1_{1..880}	"transcript_id ""ENST00000557475.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557475.1"" | genecode_v17"	chr14	 63764844	 63765723	-	ENSG00000258943.1	ENST00000557475.1	RP11-696D21.2	RP11-696D21.2-001	RHOJ	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-24.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50chr14:63754844-63758559"	NA	inter
CUST_15662_PI429285431	0.90107393	A	0.90958095	A	0.99412073399696	0	lncRNA	17351-5_{12001..15000}	lnc-SNURF-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNURF-1:7	chr15	 25277737	 25280736	+	lnc-SNURF-1	lnc-SNURF-1:7	XLOC_011183	linc-GABRA5-7	SNRPN	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40chr15:25255737-25291705"	NA	inter
CUST_42810_PI429285431	8.578031	P	8.440046	P	1.10036716856065	0	lncRNA	45814-1_{1..89}	ENST00000386307 ncrna:snoRNA chromosome:GRCh37:20:47895477:47895565:1 gene:ENSG00000209042 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000386307 ncrna:snoRNA chromosome:GRCh37:20:47895477:47895565:1 gene:ENSG00000209042 gene_biotype:snoRNA transcript_biotype:snoRNA	chr20	 47895477	 47895565	+	ENSG00000209042	ENST00000386307	NA	NA	ZNFX1	NA	chr20:47885477-47894756	inter
CUST_7001_PI429285431	0.9027777	A	0.92375714	A	0.985563382207552	0	lncRNA	6949-1_{1..3000}	"transcript_id ""ENST00000434707.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434707.1"" | genecode_v17"	chr22	 47741319	 47744318	+	ENSG00000224715.1	ENST00000434707.1	CITF22-49D8.1	CITF22-49D8.1-001	NA	NA	NA	inter
LNCA_21_P0002627	4.0310802	P	3.4994664	P	1.44554527975715	0	lncRNA	TCONS_00004997	NA	NA	NA	NA	XLOC_001835	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001835), lincRNA [TCONS_00004997]"	chr2:214038973-214039032	hs|2q34	Agilent_HUMAN_G3V2	TCONS_00004997	TCONS_00004997	chr2	214038973	214039032	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47781_PI429285431	0.9617637	A	1.973073	A	0.496095817748816	0	lncRNA	51706-3_{6001..6302}	"gi|385137094|ref|NR_047632.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 62, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137094|ref|NR_047632.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 62, non-coding RNA"	ChrY	 15366259	 15366560	-	7404	NR_047632.1	NA	NA	NA	NA	NA	inter
CUST_39884_PI429285431	5.285114	P	5.031611	P	1.19209813075489	0	lncRNA	40772-1_{1..1016}	n406552|NR_024054|lncRNA|Homosapiens||RefGeneNoncode|NR_024054||2.0548600|-0.2657162	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406552|NR_024054|lncRNA|Homosapiens||RefGeneNoncode|NR_024054||2.0548600|-0.2657162	chr5	 69423288	 69424303	-	NA	NA	NA	NA	LOC100652864	NA	chr5:69428502-69501309	inter
CUST_25083_PI429285431	0.90692836	A	0.9077985	A	0.999397046761713	0	lncRNA	26619-1_{1..549}	lnc-PRMT8-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRMT8-2:3	chr12	  4019050	  4019598	+	lnc-PRMT8-2	lnc-PRMT8-2:3	ENSG00000256862.1	RP11-664D1.1	NA	NA	NA	inter
LNCA_21_P0014747	5.26968	P	5.7083817	P	0.737798264222558	0	lncRNA	ENST00000437898	XR_132481	XR_132481	NA	NA	LOC100652915	NA	ENST00000437898	THC2640193	NA	"PREDICTED: Homo sapiens hypothetical LOC100652915 (LOC100652915), miscRNA [XR_132481]"	chr1:19567119-19567178	hs|1p36.13	Agilent_HUMAN_G3V2	ENST00000437898	ENST00000437898	chr1	 19567119	 19567178	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15332_PI429285431	4.5157347	P	4.793832	P	0.824677927799014	0	lncRNA	17011-1_{1..909}	lnc-FAM75A6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM75A6-2:1	chr9	 44182692	 44183600	-	lnc-FAM75A6-2	lnc-FAM75A6-2:1	XLOC_007697	linc-FAM75A6-1	NA	NA	NA	inter
CUST_51341_PI429285431	5.9541574	P	6.367644	P	0.750806684612731	0	lncRNA	54941-1_{1..548}	hg19_lincRNAsTranscripts_TCONS_l2_00009193 range=chr15:74200491-74202126 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009193 range=chr15:74200491-74202126 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 74200491	 74201038	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2977_PI429285431	1.4413257	A	0.8999449	A	1.45536477712424	0	lncRNA	2956-1_{1..569}	"transcript_id ""ENST00000517357.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517357.1"" | genecode_v17"	chr8	  2527314	  2527882	-	ENSG00000254319.1	ENST00000517357.1	RP11-134O21.1	RP11-134O21.1-005	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10"	NA	inter
CUST_16194_PI429285431	1.5539994	A	1.3898339	A	1.1205177479769	0	lncRNA	17899-1_{1..684}	lnc-SPAG16-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPAG16-4:2	chr2	213682115	213682798	+	lnc-SPAG16-4	lnc-SPAG16-4:2	XLOC_001833	linc-SPAG16-3	NA	NA	NA	inter
CUST_17733_PI429285431	1.5207113	A	0.91259634	A	1.52426628544003	0	lncRNA	19465-1_{1..585}	lnc-CCDC53-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC53-2:1	chr12	102318134	102318718	-	lnc-CCDC53-2	lnc-CCDC53-2:1	XLOC_010173	linc-GNPTAB	DRAM1	NA	chr12:102308134-102317401	inter
LNCA_21_P0009070	1.0501722	A	0.88709587	A	1.11967212661525	0	lncRNA	TCONS_00024740	NA	NA	NA	NA	XLOC_012020	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012020), lincRNA [TCONS_00024740]"	chr16:80587387-80587328	hs|16q23.2	Agilent_HUMAN_G3V2	TCONS_00024740	TCONS_00024740	chr16	 80587328	 80587387	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012278	0.87785506	A	0.88639355	A	0.994099049138137	0	lncRNA	ENST00000423580	XR_132906	XR_132906	NA	NA	XLOC_l2_009449	NA	ENST00000423580	THC2772310	NA	"PREDICTED: Homo sapiens von Willebrand factor-like (LOC100289038), miscRNA [XR_132906]"	chr22:17160378-17160319	hs|22q11.1	Agilent_HUMAN_G3V2	ENST00000423580	ENST00000423580	chr22	 17160319	 17160378	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11107_PI429285431	4.801897	P	4.2991323	P	1.41692628048272	0	lncRNA	12663-1_{1..1102}	lnc-ORAOV1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ORAOV1-2:1	chr11	 69290987	 69292088	-	lnc-ORAOV1-2	lnc-ORAOV1-2:1	XLOC_009485	linc-MRGPRF-1	NA	NA	NA	inter
CUST_37928_PI429285431	5.6126328	P	6.163343	P	0.682683978667887	0	lncRNA	39017-1_{1..207}	n346471|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2021|NULL|-1.3013700|-0.2626098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346471|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2021|NULL|-1.3013700|-0.2626098	chr15	 20488861	 20489067	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9799_PI429285431	0.8789293	A	0.8781392	A	1.00054780557806	0	lncRNA	11316-1_{1..604}	lnc-KRT8P11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-KRT8P11-1:1	chr9	102304598	102305201	+	lnc-KRT8P11-1	lnc-KRT8P11-1:1	XLOC_007488	linc-NR4A3	NA	NA	NA	inter
LNCA_21_P0004863	6.0325727	P	6.075817	P	0.970470120466049	0	lncRNA	XR_108691	XR_108691	XR_108691	NA	Hs.484967	LOC100507100	uncharacterized LOC100507100	NA	THC2607977	NA	"PREDICTED: Homo sapiens hypothetical LOC100507100 (LOC100507100), miscRNA [XR_108691]"	chr6:26687678-26687737	hs|6p22.2	Agilent_HUMAN_G3V2	XR_108691	XR_108691	chr6	 26687678	 26687737	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11877_PI429285431	8.495634	P	8.52401	P	0.980523423395418	0	lncRNA	13458-1_{1..332}	lnc-GMDS-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GMDS-4:2	chr6	  1311062	  1311393	-	lnc-GMDS-4	lnc-GMDS-4:2	XLOC_005574	linc-HUS1B-2	FOXQ1	NA	chr6:1312675-1314993	inter
CUST_24092_PI429285431	8.252772	P	8.1136465	P	1.10123739054026	0	lncRNA	25643-1_{1..745}	lnc-ZNF827-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF827-1:1	chr4	146571524	146572268	-	lnc-ZNF827-1	lnc-ZNF827-1:1	ENSG00000248356.1	RP11-557J10.4	MMAA	"hg19_refFlat_MMAA:range=chr4:146560292-1465765865'pad=0,hg19_refFlat_MMAA:range=chr4:146560292-1465765865'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40chr4:146561524-146581187"	NA	inner
CUST_16343_PI429285431	0.8896183	A	0.88394535	A	1.00393993049759	0	lncRNA	18044-1_{1..2806}	lnc-GJA8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GJA8-1:1	chr1	147264755	147267560	+	lnc-GJA8-1	lnc-GJA8-1:1	XLOC_000387	linc-GJA8-1	NA	NA	NA	inter
CUST_4065_PI429285431	0.87395865	A	0.87428725	A	0.999772257773667	0	lncRNA	4027-1_{1..652}	"transcript_id ""ENST00000536529.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536529.1"" | genecode_v17"	chr11	104316596	104317247	-	ENSG00000256422.1	ENST00000536529.1	RP11-886D15.1	RP11-886D15.1-003	NA	NA	NA	inter
CUST_25216_PI429285431	2.3971467	A	2.28879	A	1.07799964276485	0	lncRNA	26747-1_{1..357}	lnc-CHADL-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHADL-3:1	chr22	 41579067	 41579423	-	lnc-CHADL-3	lnc-CHADL-3:1	ENSG00000232754.1	RP1-85F18.6	EP300	"hg19_refFlat_EP300:range=chr22:41489009-415749605'pad=0,hg19_refFlat_EP300:range=chr22:41489009-415749605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80chr22:41569067-41576081"	NA	inter
CUST_4987_PI429285431	0.88719195	A	1.2433107	A	0.781263570762	0	lncRNA	4931-1_{1..386}	"transcript_id ""ENST00000556978.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556978.1"" | genecode_v17"	chr14	100443452	100443837	-	ENSG00000258693.1	ENST00000556978.1	RP11-436M15.3	RP11-436M15.3-001	NA	NA	NA	inter
CUST_29481_PI429285431	7.4314127	P	5.796314	P	3.10608799147983	0	lncRNA	31239-1_{1..589}	n332903|AF086243|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067122|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067122|2.7425100|-0.3607680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332903|AF086243|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067122|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067122|2.7425100|-0.3607680	chr3	101280722	101281310	+	NA	NA	NA	NA	PCNP	NA	chr3:101293042-101294078	inner
CUST_45736_PI429285431	0.9169161	A	0.9042894	A	1.0087905736516	0	lncRNA	50085-31_{90001..91671}	"gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	Chr11	  2719558	  2721228	-	10984	NR_002728.3	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.02;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0,hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_15377_PI429285431	0.9067517	A	0.9095294	A	0.998076497383376	0	lncRNA	17060-1_{1..1050}	lnc-AGPS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AGPS-1:1	chr2	178423480	178424529	+	lnc-AGPS-1	lnc-AGPS-1:1	XLOC_001769	linc-RBM45-2	TTC30B	NA	chr2:178414880-178417524	inter
CUST_10034_PI429285431	0.8818605	A	2.028247	A	0.451755321286212	0	lncRNA	11561-1_{1..312}	lnc-ZNF804B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF804B-2:1	chr7	 89125948	 89126259	+	lnc-ZNF804B-2	lnc-ZNF804B-2:1	XLOC_006163	linc-STEAP1-3	NA	NA	NA	inter
CUST_32043_PI429285431	2.7533045	A	3.8033721	P	0.482945534674353	0	lncRNA	33757-1_{1..1798}	n338604|CR591498|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1010|NULL|-1.0827900|-0.2634763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338604|CR591498|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1010|NULL|-1.0827900|-0.2634763	chr1	246057869	246059666	+	NA	NA	NA	NA	SMYD3	NA	chr1:246047869-246069667	inner
CUST_33200_PI429285431	1.3063031	A	1.7835007	A	0.718371689120887	0	lncRNA	34791-1_{1..1492}	n339895|BC047525|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2343|NULL|-1.1029800|-0.2451015	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339895|BC047525|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2343|NULL|-1.1029800|-0.2451015	chr18	 56143422	 56144913	+	NA	NA	NA	NA	ALPK2	NA	chr18:56148479-56154716	inter
CUST_3651_PI429285431	1.107907	A	0.88422656	A	1.16770871601726	0	lncRNA	3620-1_{1..862}	"transcript_id ""ENST00000457848.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457848.1"" | genecode_v17"	chr10	 33867859	 33868720	-	ENSG00000226412.1	ENST00000457848.1	RP11-476F14.1	RP11-476F14.1-001	NA	NA	NA	inter
CUST_16228_PI429285431	0.8860004	A	0.89589334	A	0.993166193914246	0	lncRNA	17935-1_{1..747}	lnc-MAFB-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAFB-1:2	chr20	 39339405	 39340151	-	lnc-MAFB-1	lnc-MAFB-1:2	XLOC_013743	linc-MAFB-1	NA	NA	NA	inter
CUST_276_PI429285431	4.371788	P	4.239954	P	1.09568568693451	0	lncRNA	268-1_{1..432}	"transcript_id ""ENST00000423187.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423187.1"" | genecode_v17"	chr1	 71181616	 71182047	-	ENSG00000226208.1	ENST00000423187.1	RP11-99H8.1	RP11-99H8.1-001	NA	"hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-23.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.10;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40"	NA	inter
CUST_30448_PI429285431	12.887616	P	13.263444	P	0.77066298233585	0	lncRNA	32228-1_{1..276}	n335587|CR592853|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000272048|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000272048|-1.2844200|-0.1348627	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335587|CR592853|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000272048|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000272048|-1.2844200|-0.1348627	chr9	130577298	130577573	-	NA	NA	NA	NA	ENG	NA	chr9:130577291-130587574	inner
CUST_792_PI429285431	0.90349925	A	0.8940527	A	1.00656933353085	0	lncRNA	785-1_{1..746}	"transcript_id ""ENST00000430429.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430429.1"" | genecode_v17"	chr2	 20263617	 20264362	-	ENSG00000234378.1	ENST00000430429.1	AC098828.2	AC098828.2-001	NA	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-28.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_51070_PI429285431	1.6238478	A	0.91240865	A	1.63743671583553	0	lncRNA	54707-1_{1..330}	hg19_lincRNAsTranscripts_TCONS_l2_00006790 range=chr13:37363457-37364646 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006790 range=chr13:37363457-37364646 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 37363457	 37363786	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2400_PI429285431	3.7667778	P	3.757992	P	1.00610843334976	0	lncRNA	2392-1_{1..366}	"transcript_id ""ENST00000511419.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511419.1"" | genecode_v17"	chr5	152264987	152265352	-	ENSG00000249484.4	ENST00000511419.1	AC091969.1	AC091969.1-005	NA	NA	NA	inter
CUST_11846_PI429285431	1.5267482	A	1.6661991	A	0.907864629307107	0	lncRNA	13423-1_{1..344}	lnc-IAH1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IAH1-2:6	chr2	  9715444	  9715787	+	lnc-IAH1-2	lnc-IAH1-2:6	XLOC_001338	linc-TAF1B-3	YWHAQ	"hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90chr2:9724106-9725751"	NA	inter
CUST_43960_PI429285431	10.7651205	P	10.934628	P	0.889146161622159	0	lncRNA	48665-2_{3001..3757}	"gi|300192971|ref|NR_033232.2| Homo sapiens sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) (SMPD4), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|300192971|ref|NR_033232.2| Homo sapiens sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) (SMPD4), transcript variant 6, non-coding RNA"	Chr2	130911965	130912721	-	55627	NR_033232.2	NA	NA	NA	NA	NA	inter
CUST_49272_PI429285431	0.89875984	A	0.9092147	A	0.992779437696342	0	lncRNA	53091-2_{3001..4913}	hg19_lincRNAsTranscripts_TCONS_l2_00022640 range=chr5:173930697-173959574 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022640 range=chr5:173930697-173959574 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	173933697	173935609	+	NA	NA	NA	NA	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.34;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10"	NA	inter
CUST_15655_PI429285431	0.89059997	A	0.9065094	A	0.989033004282379	0	lncRNA	17348-1_{1..792}	lnc-C1orf96-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf96-2:1	chr1	229363008	229363799	-	lnc-C1orf96-2	lnc-C1orf96-2:1	XLOC_001244	linc-HIST3H2A-4	NA	NA	NA	inter
CUST_32341_PI429285431	1.3617935	A	0.91175795	A	1.36607391828929	0	lncRNA	34022-2_{3001..6000}	n338920|CR749844|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1346|NULL|0.4480540|-0.3244629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338920|CR749844|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1346|NULL|0.4480540|-0.3244629	chr2	100892908	100895907	-	NA	NA	NA	NA	LONRF2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30chr2:100889753-100908479"	NA	inner
CUST_8664_PI429285431	0.9074341	A	0.9114101	A	0.997247840962783	0	lncRNA	10215-1_{1..559}	lnc-MARCKS-5:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MARCKS-5:14	chr6	114560153	114560711	+	lnc-MARCKS-5	lnc-MARCKS-5:14	ENSG00000228624	RP3-399L15.3	NA	NA	NA	inter
CUST_13524_PI429285431	4.6188765	P	4.855851	P	0.848522899430364	0	lncRNA	15164-1_{1..275}	lnc-C15orf2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-1:1	chr15	 24997551	 24997825	+	lnc-C15orf2-1	lnc-C15orf2-1:1	XLOC_011182	linc-SNRPN	NA	NA	NA	inter
LNCA_21_P0003812	0.9041107	A	0.9262773	A	0.984752718739487	0	lncRNA	TCONS_00008689	NA	NA	NA	NA	XLOC_004205	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004205), lincRNA [TCONS_00008689]"	chr4:185287188-185287129	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00008689	TCONS_00008689	chr4	185287129	185287188	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15969_PI429285431	0.912182	A	0.9098234	A	1.00163619404724	0	lncRNA	17667-1_{1..478}	lnc-SLC35G4-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SLC35G4-1:7	chr18	 11506756	 11507233	+	lnc-SLC35G4-1	lnc-SLC35G4-1:7	XLOC_012626	linc-GNAL-1	NA	NA	NA	inter
CUST_16254_PI429285431	2.6234343	A	2.906798	A	0.821673019362213	0	lncRNA	17958-1_{1..239}	lnc-CHST2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHST2-5:1	chr3	143755567	143755805	+	lnc-CHST2-5	lnc-CHST2-5:1	XLOC_002851	linc-ZIC1-6	NA	NA	NA	inter
CUST_49169_PI429285431	0.90688	A	0.9251938	A	0.987386072151809	0	lncRNA	52995-1_{1..394}	hg19_lincRNAsTranscripts_TCONS_l2_00020786 range=chr4:139230882-139266861 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020786 range=chr4:139230882-139266861 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	139230882	139231275	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005076	3.2319543	P	2.8064876	A	1.3430068842169	0	lncRNA	TCONS_00012342	NA	NA	NA	NA	XLOC_005894	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005894), lincRNA [TCONS_00012342]"	chr6:158226668-158226609	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_00012342	TCONS_00012342	chr6	158226609	158226668	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36797_PI429285431	4.896376	P	5.26084	P	0.776757407661906	0	lncRNA	37969-1_{1..2134}	n345276|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_825|NULL|-1.4272400|-0.2097173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345276|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_825|NULL|-1.4272400|-0.2097173	chr14	 77507391	 77509524	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36302_PI429285431	2.1280632	A	2.9427178	P	0.56854458731106	0	lncRNA	37534-1_{1..508}	n344829|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_378|NULL|-1.3322000|-0.2978036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344829|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_378|NULL|-1.3322000|-0.2978036	chr5	 76985914	 76986421	+	NA	NA	NA	NA	TBCA	NA	chr5:76986995-76996422	inter
LNCA_21_P0007486	0.8841809	A	0.8974018	A	0.990877832187728	0	lncRNA	ENST00000400306	XR_110373	XR_110373	NA	Hs.621118	XLOC_009791	NA	ENST00000400306	THC2519956	NA	"PREDICTED: Homo sapiens hypothetical LOC100507175 (LOC100507175), miscRNA [XR_110373]"	chr12:67960553-67960612	hs|12q15	Agilent_HUMAN_G3V2	ENST00000400306	ENST00000400306	chr12	 67960553	 67960612	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11307_PI429285431	0.9062328	A	0.9127215	A	0.995512475054398	0	lncRNA	12871-1_{1..908}	lnc-DLL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLL1-2:1	chr6	170492335	170493242	-	lnc-DLL1-2	lnc-DLL1-2:1	XLOC_005946	linc-TCTE3-4	NA	NA	NA	inter
LNCA_21_P0002921	1.236562	A	0.89268935	A	1.26915884951263	0	lncRNA	ENST00000432908	NA	NA	NA	NA	XLOC_003384	NA	ENST00000432908	NA	NA	"BROAD Institute lincRNA (XLOC_003384), lincRNA [TCONS_00005922]"	chr3:193924052-193922712	hs|3q29	Agilent_HUMAN_G3V2	ENST00000432908	ENST00000432908	chr3	193922712	193924052	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8986_PI429285431	4.518863	P	4.995552	P	0.718624984682323	0	lncRNA	10517-1_{1..690}	lnc-NECAB1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NECAB1-1:2	chr8	 91660706	 91661395	+	lnc-NECAB1-1	lnc-NECAB1-1:2	ENSG00000246792	RP11-68L18.1	TMEM64	NA	chr8:91650706-91658133	inter
LNCA_21_P0009909	0.8748019	A	0.8800866	A	0.996343625969343	0	lncRNA	ENST00000438154	NA	AK096285	NA	Hs.683840	XLOC_013794	NA	ENST00000438154	THC2633484	NA	"BROAD Institute lincRNA (XLOC_013794), lincRNA [TCONS_00028064]"	chr20:50448398-50448339	hs|20q13.2	Agilent_HUMAN_G3V2	ENST00000438154	ENST00000438154	chr20	 50448339	 50448398	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009550	0.87461644	A	1.3668065	A	0.710945039542216	0	lncRNA	TCONS_00026498	NA	NA	NA	NA	XLOC_012824	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012824), lincRNA [TCONS_00026498]"	chr18:36693543-36693484	hs|18q12.2	Agilent_HUMAN_G3V2	TCONS_00026498	TCONS_00026498	chr18	 36693484	 36693543	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2511_PI429285431	6.399126	P	6.3693714	P	1.0208384680317	0	lncRNA	2503-1_{1..391}	"transcript_id ""ENST00000526556.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526556.1"" | genecode_v17"	chr6	 33861100	 33861490	+	ENSG00000233183.2	ENST00000526556.1	RP3-468B3.2	RP3-468B3.2-002	NA	NA	NA	inter
CUST_34247_PI429285431	3.5086036	P	2.4959497	A	2.01761918633639	0	lncRNA	35751-3_{6001..6667}	n341102|BX649128|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3568|NULL|-1.1126900|-0.3616407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341102|BX649128|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3568|NULL|-1.1126900|-0.3616407	chr11	 94904709	 94905375	-	NA	NA	NA	NA	SESN3	NA	chr11:94906133-94915359	inner
CUST_16521_PI429285431	0.88622195	A	0.99408525	A	0.927961399635979	0	lncRNA	18221-1_{1..768}	lnc-ULK4-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ULK4-6:1	chr3	 40507989	 40508756	-	lnc-ULK4-6	lnc-ULK4-6:1	XLOC_003092	linc-CX3CR1-1	RPL14	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10chr3:40498801-40503859"	NA	inter
LNCA_21_P0009217	5.943801	P	6.0549474	P	0.925852065304161	0	lncRNA	TCONS_00025298	NA	NA	NA	NA	XLOC_012102	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012102), lincRNA [TCONS_00025298]"	chr17:8594490-8594549	hs|17p13.1	Agilent_HUMAN_G3V2	TCONS_00025298	TCONS_00025298	chr17	  8594490	  8594549	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27685_PI429285431	6.916646	P	7.169678	P	0.839131024378403	0	lncRNA	29263-1_{1..879}	n324892|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158275|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158275|-0.2496430|-0.2767240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324892|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158275|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158275|-0.2496430|-0.2767240	chr21	 18908619	 18909497	+	NA	NA	NA	NA	CXADR	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60chr21:18898619-18954549"	NA	inner
CUST_31642_PI429285431	5.821663	P	5.853265	P	0.978333331560588	0	lncRNA	33393-2_{3001..4709}	n338163|AK074042|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|552|NULL|-0.1515080|-0.2040466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338163|AK074042|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|552|NULL|-0.1515080|-0.2040466	chr22	 44581910	 44583618	-	NA	NA	NA	NA	PARVG	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PARVG:range=chr22:44579210-446023065'pad=0,hg19_refFlat_PARVG:range=chr22:44579210-446023065'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PARVG:range=chr22:44579210-445825255'pad=0,hg19_refFlat_PARVG:range=chr22:44579210-445825255'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-63.60;hg19_refFlat_PARVG:range=chr22:44568883-445825255'pad=0,hg19_refFlat_PARVG:range=chr22:44568883-445825255'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70chr22:44568910-44593619"	NA	inner
LNCA_21_P0006641	3.184649	P	4.0679793	P	0.542114574970585	0	lncRNA	ENST00000415358	NA	NA	NA	NA	XLOC_008353	NA	ENST00000415358	NA	NA	"BROAD Institute lincRNA (XLOC_008353), lincRNA [TCONS_00017769]"	chr10:3810884-3810943	hs|10p15.1	Agilent_HUMAN_G3V2	ENST00000415358	ENST00000415358	chr10	  3810884	  3810943	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36671_PI429285431	0.882977	A	0.89087194	A	0.994542590659317	0	lncRNA	37857-1_{1..1063}	n345162|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_711|NULL|-1.3065300|-0.2284480	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345162|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_711|NULL|-1.3065300|-0.2284480	chr12	 76017302	 76018364	+	NA	NA	NA	NA	NA	"hg19_refFlat_RPL10:range=chrX:153626861-1536293645'pad=0,hg19_refFlat_RPL10:range=chrX:153626861-1536293645'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90"	NA	inter
LNCA_21_P0011849	5.7944307	P	5.7802773	P	1.00985866892597	0	lncRNA	XR_109888	XR_109888	XR_109888	NA	Hs.729372	LOC100506922	uncharacterized LOC100506922	NA	THC2644853	NA	"PREDICTED: Homo sapiens hypothetical LOC100506922 (LOC100506922), miscRNA [XR_109888]"	chr2:128146574-128146745	hs|2q14.3	Agilent_HUMAN_G3V2	XR_109888	XR_109888	chr2	128146574	128146745	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22224_PI429285431	2.2298484	A	2.6052935	A	0.770867548103358	0	lncRNA	23824-1_{1..334}	lnc-RELT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RELT-1:1	chr11	 73121531	 73121864	+	lnc-RELT-1	lnc-RELT-1:1	ENSG00000256448.1	RP11-809N8.4	FAM168A	NA	chr11:73117028-73131717	inner
LNCA_33_P3257671	4.6984696	P	4.179921	P	1.43251336595569	0	lncRNA	XR_133401	XR_133401	XR_133401	   728093	NA	LOC728093	putative POM121-like protein 1-like	NA	NA	NA	"PREDICTED: Homo sapiens putative POM121-like protein 1-like (LOC728093), miscRNA [XR_133401]"	chr5:98858149-98858120	hs|5q21.1	Agilent_HUMAN_G3V2	XR_133401	XR_133401	chr5	 98858120	 98858149	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005596	5.666003	P	6.246168	P	0.668887272859251	0	lncRNA	THC2758993	NA	NA	NA	NA	XLOC_006350	NA	NA	THC2758993	NA	"BROAD Institute lincRNA (XLOC_006350), lincRNA [TCONS_00014252]"	chr7:007592545-007592486	hs|7p21.3	Agilent_HUMAN_G3V2	THC2758993	THC2758993	chr7	  7592486	  7592545	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4346_PI429285431	3.5542085	P	3.8977833	P	0.788086121437748	0	lncRNA	4301-1_{1..459}	"transcript_id ""ENST00000552532.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552532.1"" | genecode_v17"	chr12	 82874897	 82875355	-	ENSG00000258170.1	ENST00000552532.1	RP11-263K4.5	RP11-263K4.5-001	C12orf26	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr12:82864897-82873018"	NA	inter
LNCA_21_P0014653	1.9370338	A	3.9372323	P	0.249965604937422	0	lncRNA	XR_110911	XR_110911	XR_110911	NA	Hs.128709	LOC100507521	uncharacterized LOC100507521	ENST00000524942	THC2699641	NA	"PREDICTED: Homo sapiens hypothetical LOC100507521 (LOC100507521), miscRNA [XR_110911]"	chr11:61849131-61844952	hs|11q12.3	Agilent_HUMAN_G3V2	XR_110911	XR_110911	chr11	 61844952	 61849131	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003385	1.5413698	A	0.87618256	A	1.58577406935993	0	lncRNA	ENST00000515649	NA	NA	NA	NA	XLOC_003633	NA	ENST00000515649	NA	NA	"BROAD Institute lincRNA (XLOC_003633), lincRNA [TCONS_00007585]"	chr4:105890499-105891127	hs|4q24	Agilent_HUMAN_G3V2	ENST00000515649	ENST00000515649	chr4	105890499	105891127	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11480_PI429285431	0.88397634	A	0.8794217	A	1.00316202456066	0	lncRNA	13047-1_{1..355}	lnc-STIL-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STIL-3:1	chr1	 47973268	 47973622	-	lnc-STIL-3	lnc-STIL-3:1	XLOC_000824	linc-STIL-4	NA	NA	NA	inter
CUST_8813_PI429285431	4.75302	P	1.7632953	A	7.94322406569391	0	lncRNA	10353-2_{3001..6000}	lnc-OSBP2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OSBP2-2:3	chr22	 31374156	 31377155	+	lnc-OSBP2-2	lnc-OSBP2-2:3	ENSG00000253352	TUG1	MORC2	NA	chr22:31361156-31364187	inter
CUST_32242_PI429285431	0.8867606	A	1.0882571	A	0.869648013948018	0	lncRNA	33934-1_{1..529}	n338817|AF339794|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1240|NULL|-1.0727700|-0.1907316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338817|AF339794|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1240|NULL|-1.0727700|-0.1907316	chr13	 96229523	 96230051	+	NA	NA	NA	NA	CLDN10	NA	chr13:96219523-96232010	inner
CUST_30128_PI429285431	4.6278763	P	5.336104	P	0.612071585554808	0	lncRNA	31901-1_{1..302}	n334769|AJ132089|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244665|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244665|1.0056100|-0.1315151	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334769|AJ132089|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244665|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244665|1.0056100|-0.1315151	chr12	124332553	124332854	+	NA	NA	NA	NA	DNAH10	NA	chr12:124322553-124345496	inner
CUST_13293_PI429285431	1.1610019	A	0.8754465	A	1.21887941017871	0	lncRNA	14926-1_{1..925}	lnc-PARM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PARM1-1:1	chr4	 75808064	 75808988	+	lnc-PARM1-1	lnc-PARM1-1:1	XLOC_003574	linc-PARM1-2	NA	NA	NA	inter
CUST_50177_PI429285431	7.989743	P	8.072108	P	0.944508051437557	0	lncRNA	53903-1_{1..477}	hg19_lincRNAsTranscripts_TCONS_l2_00029917 range=chr9:34665025-34666109 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029917 range=chr9:34665025-34666109 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 34665025	 34665501	-	NA	NA	NA	NA	IL11RA	NA	chr9:34655025-34661884	inter
CUST_7997_PI429285431	2.1738825	A	2.4936829	A	0.801180715018431	0	lncRNA	9608-1_{1..2049}	lnc-MUSK-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MUSK-2:1	chr9	113341935	113343983	+	lnc-MUSK-2	lnc-MUSK-2:1	ENSG00000246516	ENST00000502090	SVEP1	"hg19_refFlat_SVEP1:range=chr9:113128819-1133418235'pad=0,hg19_refFlat_SVEP1:range=chr9:113128819-1133418235'pad=0 3'pad=0 strand=- repeatMasking=none,-110.00chr9:113331935-113342160"	NA	inner
CUST_37940_PI429285431	1.3191347	A	1.5707111	A	0.839978088708841	0	lncRNA	39030-1_{1..1141}	n346486|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2036|NULL|-1.3221600|-0.3767984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346486|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2036|NULL|-1.3221600|-0.3767984	chr6	 27821497	 27822637	+	NA	NA	NA	NA	HIST1H2AL	NA	chr6:27833107-27833576	inter
CUST_26424_PI429285431	3.7606237	P	3.9158783	P	0.897973888713664	0	lncRNA	27931-1_{1..1938}	lnc-C1QBP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1QBP-1:1	chr17	  5334614	  5336551	-	lnc-C1QBP-1	lnc-C1QBP-1:1	ENSG00000263272.1	CTC-524C5.2	RPAIN	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00chr17:5324614-5336340"	NA	inner
CUST_3113_PI429285431	0.8900776	A	1.0907277	A	0.870158368540696	0	lncRNA	3092-1_{1..553}	"transcript_id ""ENST00000523664.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523664.1"" | genecode_v17"	chr8	 57432874	 57433426	-	ENSG00000246430.2	ENST00000523664.1	RP11-16M8.2	RP11-16M8.2-003	NA	NA	NA	inter
CUST_20074_PI429285431	3.162615	P	3.154921	A	1.00534732056255	0	lncRNA	21723-1_{1..3000}	lnc-P2RY2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-P2RY2-1:1	chr11	 72950020	 72953019	+	lnc-P2RY2-1	lnc-P2RY2-1:1	ENSG00000260401.1	RP11-800A3.4	P2RY6	NA	chr11:72960361-72963380	inter
CUST_32437_PI429285431	2.3111248	A	1.4291996	A	1.84283282381313	0	lncRNA	34111-1_{1..1798}	n339036|AK129757|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1465|NULL|-0.9123130|-0.2637546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339036|AK129757|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1465|NULL|-0.9123130|-0.2637546	chr2	179413610	179415407	+	NA	NA	NA	NA	TTN	"hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80chr2:179403610-179425408"	NA	inter
CUST_30610_PI429285431	0.9215041	A	0.90690327	A	1.01017190985666	0	lncRNA	32392-1_{1..223}	n335932|X69207|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322970|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322970|-1.0489100|-0.1676306	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335932|X69207|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322970|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322970|-1.0489100|-0.1676306	chr11	119170489	119170711	+	NA	NA	NA	NA	CBL	NA	chr11:119160489-119178859	inner
CUST_47527_PI429285431	5.9470673	P	5.1857314	P	1.6950594814949	0	lncRNA	51538-1_{1..1902}	"gi|405113062|ref|NR_046423.1| Homo sapiens malonyl CoA:ACP acyltransferase (mitochondrial) (MCAT), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|405113062|ref|NR_046423.1| Homo sapiens malonyl CoA:ACP acyltransferase (mitochondrial) (MCAT), transcript variant 3, non-coding RNA"	Chr22	 43528212	 43530113	-	27349	NR_046423.1	NA	NA	NA	NA	NA	inter
CUST_45799_PI429285431	3.199948	A	2.9655526	P	1.17641362625955	0	lncRNA	50139-1_{1..2259}	"gi|224451015|ref|NR_027044.1| Homo sapiens glutamate receptor, metabotropic 5 pseudogene (LOC440040), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224451015|ref|NR_027044.1| Homo sapiens glutamate receptor, metabotropic 5 pseudogene (LOC440040), non-coding RNA"	Chr11	 49580080	 49582338	+	440040	NR_027044.1	NA	NA	NA	NA	NA	inter
LNCA_33_P3312232	0.907764	A	0.9321398	A	0.983245920136799	0	lncRNA	XR_132731	XR_132731	XR_132731	   647166	Hs.539702	LINC00371	long intergenic non-protein coding RNA 371	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC647166 (LOC647166), miscRNA [XR_132731]"	chr13:51658446-51658387	hs|13q14.3	Agilent_HUMAN_G3V2	XR_132731	XR_132731	chr13	 51658387	 51658446	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011621	0.9072309	A	0.9304166	A	0.984057348547147	0	lncRNA	TCONS_l2_00011553	NA	NA	NA	NA	XLOC_l2_005759	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005759), lincRNA [TCONS_l2_00011553]"	chr17:34900084-34900143	hs|17q12	Agilent_HUMAN_G3V2	TCONS_l2_00011553	TCONS_l2_00011553	chr17	 34900084	 34900143	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46723_PI429285431	10.871626	P	10.505286	P	1.28907839184784	0	lncRNA	50878-2_{3001..4243}	"gi|380036036|ref|NR_046385.2| Homo sapiens smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) (SMG6), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|380036036|ref|NR_046385.2| Homo sapiens smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) (SMG6), transcript variant 5, non-coding RNA"	Chr17	  1966133	  1967375	-	23293	NR_046385.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0008399	8.461081	P	7.87463	P	1.50154842227186	0	lncRNA	TCONS_00022643	NA	NA	NA	NA	XLOC_010947	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010947), lincRNA [TCONS_00022643]"	chr14:104675982-104676041	hs|14q32.33	Agilent_HUMAN_G3V2	TCONS_00022643	TCONS_00022643	chr14	104675982	104676041	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41820_PI429285431	4.927752	P	5.310181	P	0.767144895766476	0	lncRNA	43418-1_{1..80}	ENST00000410258 ncrna:miRNA chromosome:GRCh37:16:85775227:85775306:-1 gene:ENSG00000222190 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410258 ncrna:miRNA chromosome:GRCh37:16:85775227:85775306:-1 gene:ENSG00000222190 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 85775227	 85775306	-	ENSG00000222190	ENST00000410258	NA	NA	C16orf74	NA	chr16:85765227-85784689	inner
CUST_22396_PI429285431	2.0204246	A	2.4124804	A	0.762042940598187	0	lncRNA	23986-1_{1..3000}	lnc-ZNF821-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF821-2:1	chr16	 72033583	 72036582	-	lnc-ZNF821-2	lnc-ZNF821-2:1	ENSG00000187008.2	PKD1L3	DHODH	NA	chr16:72042643-72043877	inner
CUST_17464_PI429285431	3.9567497	P	3.0256708	A	1.9067013639118	0	lncRNA	19188-1_{1..659}	lnc-SCRG1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCRG1-1:5	chr4	174290890	174291548	-	lnc-SCRG1-1	lnc-SCRG1-1:5	XLOC_004165	linc-HMGB2	SAP30	NA	chr4:174292093-174298683	inter
CUST_22236_PI429285431	6.4855013	P	6.4951386	P	0.993342194728261	0	lncRNA	23836-1_{1..250}	lnc-ZDHHC17-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZDHHC17-4:1	chr12	 77009083	 77009332	+	lnc-ZDHHC17-4	lnc-ZDHHC17-4:1	ENSG00000257526.1	RP11-20E24.1	NA	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70"	NA	inter
LNCA_21_P0014445	3.7222617	P	3.5230742	P	1.14805161079781	0	lncRNA	ENST00000500800	XR_109838	XR_109838	NA	NA	SMARCA5-AS1	NA	ENST00000500800	THC2670760	NA	"PREDICTED: Homo sapiens SMARCA5 antisense RNA 1 (non-protein coding) (SMARCA5-AS1), miscRNA [XR_109838]"	chr4:144434684-144434625	hs|4q31.21	Agilent_HUMAN_G3V2	ENST00000500800	ENST00000500800	chr4	144434625	144434684	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34525_PI429285431	6.5264354	P	6.661624	P	0.910550791729454	0	lncRNA	35989-1_{1..3000}	n341405|AK125572|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3875|NULL|-1.2719600|-0.3168320	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341405|AK125572|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3875|NULL|-1.2719600|-0.3168320	chr13	100504863	100507862	-	NA	NA	NA	NA	CLYBL	NA	chr13:100494863-100549388	inner
CUST_24805_PI429285431	1.3294921	A	0.91248	A	1.33515950133968	0	lncRNA	26348-1_{1..1032}	lnc-CLCN6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLCN6-1:1	chr1	 11907491	 11908522	+	lnc-CLCN6-1	lnc-CLCN6-1:1	ENSG00000242349.1	NPPA-AS1	CLCN6	"hg19_refFlat_NPPA:range=chr1:11906066-119077415'pad=0,hg19_refFlat_NPPA:range=chr1:11906066-119077415'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70chr1:11897491-11903201"	NA	inner
CUST_6758_PI429285431	0.908798	A	0.9224885	A	0.990555352041638	0	lncRNA	6706-1_{1..816}	"transcript_id ""ENST00000454128.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454128.2"" | genecode_v17"	chr21	 16120067	 16120882	-	ENSG00000232884.2	ENST00000454128.2	AF127936.3	AF127936.3-002	NA	NA	NA	inter
CUST_24345_PI429285431	3.660832	P	3.7785778	P	0.921626560662247	0	lncRNA	25898-1_{1..876}	lnc-RFPL3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RFPL3-3:1	chr22	 32665344	 32666219	+	lnc-RFPL3-3	lnc-RFPL3-3:1	ENSG00000242082.1	RP1-90G24.10	NA	NA	NA	inter
CUST_35680_PI429285431	10.897331	P	10.702224	P	1.14480906421587	0	lncRNA	37100-1_{1..1825}	n342841|AF113008|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5344|NULL|-0.4090360|-0.2670494	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342841|AF113008|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5344|NULL|-0.4090360|-0.2670494	chr8	 56979853	 56981677	+	NA	NA	NA	NA	RPS20	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.82;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RPS20:range=chr8:56985649-569869425'pad=0,hg19_refFlat_RPS20:range=chr8:56985649-569869425'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_RPS20:range=chr8:56982297-569869425'pad=0,hg19_refFlat_RPS20:range=chr8:56982297-569869425'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90chr8:56980739-56987140"	NA	inner
CUST_20025_PI429285431	4.0200915	P	4.2136755	P	0.874430725485332	0	lncRNA	21678-1_{1..455}	lnc-HIVEP2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HIVEP2-4:1	chr6	143420621	143421075	-	lnc-HIVEP2-4	lnc-HIVEP2-4:1	ENSG00000225752.1	RP1-45I4.2	AIG1	NA	chr6:143410621-143430782	inner
CUST_4765_PI429285431	0.888618	A	1.3446364	A	0.728995391808751	0	lncRNA	4710-1_{1..233}	"transcript_id ""ENST00000548124.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548124.1"" | genecode_v17"	chr14	 30421603	 30421835	-	ENSG00000248975.2	ENST00000548124.1	CTD-2251F13.1	CTD-2251F13.1-003	NA	NA	NA	inter
LNCA_21_P0008724	1.423317	A	3.4697623	P	0.242079815795816	0	lncRNA	XR_109176	XR_109176	XR_109176	NA	Hs.285193	LOC100507568	uncharacterized LOC100507568	NA	THC2611217	NA	"PREDICTED: Homo sapiens hypothetical LOC100507568 (LOC100507568), miscRNA [XR_109176]"	chr15:38364320-38364261	hs|15q14	Agilent_HUMAN_G3V2	XR_109176	XR_109176	chr15	 38364261	 38364320	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19368_PI429285431	1.7663603	A	0.90588653	A	1.81563445319082	0	lncRNA	21031-1_{1..466}	lnc-LRRC48-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-LRRC48-1:1	chr17	 17682029	 17682494	+	lnc-LRRC48-1	lnc-LRRC48-1:1	ENSG00000264167.1	RP1-253P7.1	RAI1	NA	chr17:17672029-17692408	inner
CUST_2802_PI429285431	0.8856406	A	0.885564	A	1.0000530964836	0	lncRNA	2786-1_{1..562}	"transcript_id ""ENST00000441150.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441150.1"" | genecode_v17"	chr7	 35535631	 35536192	-	ENSG00000235464.1	ENST00000441150.1	AC007652.1	AC007652.1-001	NA	NA	NA	inter
LNCA_21_P0004275	0.8765265	A	1.7048832	A	0.563170355641718	0	lncRNA	TCONS_00010013	NA	NA	NA	NA	XLOC_004457	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004457), lincRNA [TCONS_00010013]"	chr5:87578854-87583265	hs|5q14.3	Agilent_HUMAN_G3V2	TCONS_00010013	TCONS_00010013	chr5	 87578854	 87583265	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16289_PI429285431	1.8166252	A	2.9148302	A	0.46709729645509	0	lncRNA	17996-1_{1..881}	lnc-RWDD3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RWDD3-2:1	chr1	 95786850	 95787730	+	lnc-RWDD3-2	lnc-RWDD3-2:1	XLOC_000308	linc-PTBP2-6	NA	NA	NA	inter
CUST_39382_PI429285431	0.89142966	A	0.90558094	A	0.990239030711746	0	lncRNA	40345-1_{1..553}	n386522|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mti.1||-0.8178340|-0.2287579	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386522|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mti.1||-0.8178340|-0.2287579	chr9	107606050	107606602	-	NA	NA	NA	NA	ABCA1	NA	chr9:107596050-107616603	inner
CUST_4392_PI429285431	5.202417	P	5.3508306	P	0.902242030517326	0	lncRNA	4343-1_{1..379}	"transcript_id ""ENST00000547360.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547360.1"" | genecode_v17"	chr12	101802150	101802528	-	ENSG00000257543.1	ENST00000547360.1	RP11-321F8.4	RP11-321F8.4-001	ARL1	NA	chr12:101792150-101801572	inter
CUST_31582_PI429285431	2.7912796	A	1.8395623	A	1.93417361553416	0	lncRNA	33339-1_{1..1237}	n338086|AL109959|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|473|NULL|-0.6061180|-0.1748108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338086|AL109959|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|473|NULL|-0.6061180|-0.1748108	chr15	 85165251	 85166487	-	NA	NA	NA	NA	ZSCAN2	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90chr15:85155251-85166947"	NA	inner
CUST_46046_PI429285431	3.8553185	P	3.3798456	P	1.39037389484364	0	lncRNA	50323-1_{1..3000}	"gi|345110612|ref|NR_045072.1| Homo sapiens cysteine-serine-rich nuclear protein 2 (CSRNP2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|345110612|ref|NR_045072.1| Homo sapiens cysteine-serine-rich nuclear protein 2 (CSRNP2), transcript variant 2, non-coding RNA"	Chr12	 51454988	 51457987	-	81566	NR_045072.1	NA	NA	NA	NA	NA	inter
CUST_9336_PI429285431	1.9017453	A	1.7130225	A	1.139754258816	0	lncRNA	10843-2_{3001..6000}	lnc-PVRL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PVRL1-1:1	chr11	119491907	119494906	-	lnc-PVRL1-1	lnc-PVRL1-1:1	XLOC_009577	linc-THY1	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-20.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0,hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60"	NA	inter
CUST_11063_PI429285431	7.048586	P	6.9697328	P	1.05617814952603	0	lncRNA	12614-1_{1..410}	lnc-MBOAT7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBOAT7-1:1	chr19	 54703732	 54704141	-	lnc-MBOAT7-1	lnc-MBOAT7-1:1	XLOC_013405	linc-MBOAT7	RPS9	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-12.60chr19:54704726-54711515"	NA	inter
CUST_9218_PI429285431	0.88501185	A	0.8957693	A	0.992571234562384	0	lncRNA	10728-2_{3001..4271}	lnc-PAICS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PAICS-1:1	chr4	 57288780	 57290050	+	lnc-PAICS-1	lnc-PAICS-1:1	ENSG00000223357	AC068620.1	PPAT	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00chr4:57275780-57299623"	NA	inner
CUST_8463_PI429285431	0.9137678	A	1.326812	A	0.751036953519698	0	lncRNA	10030-2_{3001..4482}	lnc-KCNH3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNH3-1:1	chr12	 50000960	 50002441	+	lnc-KCNH3-1	lnc-KCNH3-1:1	ENSG00000250952	ENST00000527253	FAM186B	"hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FAM186B:range=chr12:49981388-499992605'pad=0,hg19_refFlat_FAM186B:range=chr12:49981388-499992605'pad=0 3'pad=0 strand=- repeatMasking=none,-99.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40chr12:49987960-49999433"	NA	inner
CUST_27358_PI429285431	5.781446	P	5.483325	P	1.22954198561106	0	lncRNA	28921-1_{1..613}	n324520|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040490|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040490|-0.9184980|-0.2721389	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324520|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040490|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040490|-0.9184980|-0.2721389	chr6	 40789127	 40789739	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4501_PI429285431	6.5509667	P	6.9192786	P	0.774688430943265	0	lncRNA	4450-1_{1..462}	"transcript_id ""ENST00000541797.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000541797.1"" | genecode_v17"	chr12	128278072	128278533	-	ENSG00000256922.1	ENST00000541797.1	RP11-749H20.1	RP11-749H20.1-001	NA	NA	NA	inter
LNCA_21_P0009487	0.8749852	A	0.876819	A	0.998729714197207	0	lncRNA	THC2671956	NA	NA	NA	NA	XLOC_012693	NA	NA	THC2671956	NA	"BROAD Institute lincRNA (XLOC_012693), lincRNA [TCONS_00026343]"	chr18:056117723-056117782	hs|18q21.31	Agilent_HUMAN_G3V2	THC2671956	THC2671956	chr18	 56117723	 56117782	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003765	0.8748734	A	0.8768506	A	0.998630448087974	0	lncRNA	TCONS_00008565	NA	NA	NA	NA	XLOC_004059	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004059), lincRNA [TCONS_00008565]"	chr4:122485532-122485473	hs|4q27	Agilent_HUMAN_G3V2	TCONS_00008565	TCONS_00008565	chr4	122485473	122485532	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16773_PI429285431	4.2545586	P	4.6243467	P	0.77389615665661	0	lncRNA	18481-1_{1..292}	lnc-DUSP4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DUSP4-2:1	chr8	 29247963	 29248254	-	lnc-DUSP4-2	lnc-DUSP4-2:1	XLOC_007036	linc-DUSP4-4	NA	NA	NA	inter
LNCA_21_P0007133	1.873667	A	2.2867072	A	0.751039035839172	0	lncRNA	AK056982	NA	AK056982	NA	Hs.677170	XLOC_009372	NA	NA	THC2612909	NA	"BROAD Institute lincRNA (XLOC_009372), lincRNA [TCONS_00019118]"	chr11:10920761-10920702	hs|11p15.3	Agilent_HUMAN_G3V2	AK056982	AK056982	chr11	 10920702	 10920761	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011862	0.87303746	A	0.8764831	A	0.997614514153152	0	lncRNA	TCONS_l2_00014018	NA	NA	NA	NA	XLOC_l2_007586	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007586), lincRNA [TCONS_l2_00014018]"	chr2:145940473-145940532	hs|2q22.3	Agilent_HUMAN_G3V2	TCONS_l2_00014018	TCONS_l2_00014018	chr2	145940473	145940532	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44134_PI429285431	8.406795	P	7.428164	P	1.97059458785764	0	lncRNA	48797-1_{1..1083}	"gi|223972628|ref|NR_026937.1| Homo sapiens 3-oxoacyl-ACP synthase, mitochondrial (OXSM), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223972628|ref|NR_026937.1| Homo sapiens 3-oxoacyl-ACP synthase, mitochondrial (OXSM), transcript variant 3, non-coding RNA"	Chr3	 25831563	 25832645	+	54995	NR_026937.1	NA	NA	NA	NA	NA	inter
CUST_27481_PI429285431	7.5034714	P	7.320867	P	1.13493085119238	0	lncRNA	29051-1_{1..630}	n324657|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000318225|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000318225|-0.7289420|-0.2377696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324657|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000318225|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000318225|-0.7289420|-0.2377696	chr22	 43217870	 43218499	+	NA	NA	NA	NA	ARFGAP3	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ARFGAP3:range=chr22:43193594-432531885'pad=0,hg19_refFlat_ARFGAP3:range=chr22:43193594-432531885'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70chr22:43207870-43229332"	NA	inner
LNCA_21_P0002918	4.2023883	P	4.652903	P	0.731781728858811	0	lncRNA	ENST00000444379	NA	NA	NA	NA	XLOC_003367	NA	ENST00000444379	NA	NA	"BROAD Institute lincRNA (XLOC_003367), lincRNA [TCONS_00005913]"	chr3:187719760-187719701	hs|3q27.3	Agilent_HUMAN_G3V2	ENST00000444379	ENST00000444379	chr3	187719701	187719760	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41736_PI429285431	0.89721835	A	1.4020767	A	0.704729567552228	0	lncRNA	43268-1_{1..71}	ENST00000577547 ncrna:miRNA chromosome:GRCh37:13:102698284:102698354:-1 gene:ENSG00000264482 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577547 ncrna:miRNA chromosome:GRCh37:13:102698284:102698354:-1 gene:ENSG00000264482 gene_biotype:miRNA transcript_biotype:miRNA	chr13	102698284	102698354	-	ENSG00000264482	ENST00000577547	NA	NA	FGF14	NA	chr13:102688284-102708354	inner
CUST_27331_PI429285431	0.91679573	A	0.91592664	A	1.00060258876686	0	lncRNA	28891-1_{1..674}	n324486|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041117|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041117|-0.8667620|-0.3048349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324486|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041117|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041117|-0.8667620|-0.3048349	chr6	 68993584	 68994257	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_32_P515431	0.903687	A	0.9278426	A	0.983396005407383	0	lncRNA	XR_110830	XR_110830	XR_110830	100132057	NA	LOC100132057	phosphodiesterase 4D interacting protein pseudogene	NA	THC2531632	NA	"PREDICTED: Homo sapiens hypothetical LOC100132057 (LOC100132057), miscRNA [XR_110830]"	chr1:147904566-147904624	hs|1q21.2	Agilent_HUMAN_G3V2	XR_110830	XR_110830	chr1	147904566	147904624	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47657_PI429285431	4.8393407	P	3.7773638	P	2.08779042550212	0	lncRNA	51641-1_{1..2380}	"gi|213688404|ref|NR_024503.1| Homo sapiens FMR1 antisense RNA 1 (FMR1-AS1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|213688404|ref|NR_024503.1| Homo sapiens FMR1 antisense RNA 1 (FMR1-AS1), transcript variant 5, non-coding RNA"	ChrX	146990949	146993328	-	100126270	NR_024503.1	NA	NA	NA	"hg19_refFlat_FMR1:range=chrX:146993698-1470303645'pad=0,hg19_refFlat_FMR1:range=chrX:146993698-1470303645'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60;hg19_refFlat_FMR1:range=chrX:146993698-1470303505'pad=0,hg19_refFlat_FMR1:range=chrX:146993698-1470303505'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60"	NA	inter
CUST_5365_PI429285431	2.826035	A	2.6647718	A	1.11826584468289	0	lncRNA	5303-1_{1..577}	"transcript_id ""ENST00000558254.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558254.1"" | genecode_v17"	chr15	101389988	101390564	+	ENSG00000232386.4	ENST00000558254.1	RP11-66B24.2	RP11-66B24.2-001	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50"	NA	inter
CUST_18571_PI429285431	2.1693757	A	0.9120102	A	2.39058797721659	0	lncRNA	20279-2_{3001..3137}	lnc-ITGA2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITGA2-1:4	chr5	 52411070	 52411206	+	lnc-ITGA2-1	lnc-ITGA2-1:4	ENSG00000247796	CTD-2366F13.1	MOCS2	NA	chr5:52398070-52405598	inter
CUST_21973_PI429285431	4.7306	P	5.117411	P	0.764818327263762	0	lncRNA	23581-1_{1..579}	lnc-CALML5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALML5-2:2	chr10	  5568096	  5568674	-	lnc-CALML5-2	lnc-CALML5-2:2	ENSG00000205488.3	RP11-116G8.4	CALML3	NA	chr10:5566924-5568225	inner
CUST_334_PI429285431	1.1788762	A	1.3929074	A	0.862124900337338	0	lncRNA	327-1_{1..260}	"transcript_id ""ENST00000454466.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454466.1"" | genecode_v17"	chr1	101788893	101789152	+	ENSG00000231671.1	ENST00000454466.1	RP11-157N3.1	RP11-157N3.1-003	NA	NA	NA	inter
CUST_16569_PI429285431	0.91888654	A	2.5939434	A	0.313153767287344	0	lncRNA	18270-1_{1..745}	lnc-MYNN-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-MYNN-3:1	chr3	168639520	168640264	+	lnc-MYNN-3	lnc-MYNN-3:1	XLOC_002912	linc-MYNN-2	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10"	NA	inter
LNCA_21_P0005023	13.650526	P	14.636449	P	0.504902595908653	0	lncRNA	ENST00000444731	NA	NA	NA	NA	XLOC_005711	NA	ENST00000444731	THC2713399	NA	"BROAD Institute lincRNA (XLOC_005711), lincRNA [TCONS_00012163]"	chr6:40239563-40239504	hs|6p21.2	Agilent_HUMAN_G3V2	ENST00000444731	ENST00000444731	chr6	 40239504	 40239563	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2550_PI429285431	6.480882	P	6.3961163	P	1.06051549501569	0	lncRNA	2538-1_{1..732}	"transcript_id ""ENST00000602823.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602823.1"" | genecode_v17"	chr6	 72004876	 72005607	-	ENSG00000269966.1	ENST00000602823.1	RP3-331H24.5	RP3-331H24.5-001	OGFRL1	NA	chr6:71994876-72011973	inner
LNCA_21_P0014564	3.343309	P	1.8846678	A	2.74849375241923	0	lncRNA	XR_110321	XR_110321	XR_110321	NA	NA	LOC100507363	uncharacterized LOC100507363	NA	THC2735755	NA	"PREDICTED: Homo sapiens hypothetical LOC100507363 (LOC100507363), miscRNA [XR_110321]"	chr12:73522859-73522800	hs|12q21.1	Agilent_HUMAN_G3V2	XR_110321	XR_110321	chr12	 73522800	 73522859	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013407	0.8999973	A	0.9201357	A	0.986138098179778	0	lncRNA	XR_108804	XR_108804	XR_108804	NA	NA	LOC100506664	uncharacterized LOC100506664	ENST00000453278	THC2693238	NA	"PREDICTED: Homo sapiens hypothetical LOC100506664 (LOC100506664), miscRNA [XR_108804]"	chr7:125078285-125078344	hs|7q31.33	Agilent_HUMAN_G3V2	XR_108804	XR_108804	chr7	125078285	125078344	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29738_PI429285431	5.3320684	P	5.930575	P	0.66043725064815	0	lncRNA	31500-1_{1..243}	n333412|BC010378|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087473|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087473|1.7289400|-0.2955149	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333412|BC010378|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087473|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087473|1.7289400|-0.2955149	chrX	150154046	150154288	+	NA	NA	NA	NA	HMGB3	NA	chrX:150151763-150159248	inner
CUST_44055_PI429285431	3.5331523	P	3.688584	P	0.897863663468176	0	lncRNA	48730-1_{1..3000}	"gi|318065125|ref|NR_037701.1| Homo sapiens DKFZp434H1419 (PKI55), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|318065125|ref|NR_037701.1| Homo sapiens DKFZp434H1419 (PKI55), non-coding RNA"	Chr2	217081612	217084611	+	150967	NR_037701.1	NA	NA	NA	NA	NA	inter
CUST_15484_PI429285431	0.9094658	A	0.9067148	A	1.00190866708429	0	lncRNA	17173-1_{1..471}	lnc-API5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-API5-2:1	chr11	 42283397	 42283867	+	lnc-API5-2	lnc-API5-2:1	XLOC_009114	linc-API5-1	NA	NA	NA	inter
CUST_33035_PI429285431	3.1743333	A	3.7604384	P	0.666138882714826	0	lncRNA	34649-1_{1..1954}	n339722|AK055531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2167|NULL|-0.9784840|-0.2732897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339722|AK055531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2167|NULL|-0.9784840|-0.2732897	chr20	 55736877	 55738830	+	NA	NA	NA	NA	BMP7	NA	chr20:55743809-55748831	inter
CUST_48634_PI429285431	1.0550681	A	1.2405245	A	0.879370840862159	0	lncRNA	52481-1_{1..447}	hg19_lincRNAsTranscripts_TCONS_l2_00013768 range=chr2:89100573-89104995 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013768 range=chr2:89100573-89104995 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 89100573	 89101019	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6412_PI429285431	0.90990126	M	0.91611093	A	0.995705034605877	0	lncRNA	6351-1_{1..669}	"transcript_id ""ENST00000586248.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586248.1"" | genecode_v17"	chr19	 28264871	 28265539	-	ENSG00000261824.2	ENST00000586248.1	LINC00662	LINC00662-005	NA	NA	NA	inter
LNCA_21_P0008018	1.8685535	A	1.0887078	A	1.71694723106767	0	lncRNA	ENST00000437334	NA	NA	NA	NA	XLOC_010703	NA	ENST00000437334	NA	NA	"BROAD Institute lincRNA (XLOC_010703), lincRNA [TCONS_00021691]"	chr13:98327327-98327268	hs|13q32.2	Agilent_HUMAN_G3V2	ENST00000437334	ENST00000437334	chr13	 98327268	 98327327	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12288_PI429285431	3.0371587	A	1.7089888	A	2.51083965595953	0	lncRNA	13898-1_{1..490}	lnc-FRG2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRG2-5:2	chr4	190201198	190201687	-	lnc-FRG2-5	lnc-FRG2-5:2	XLOC_004229	linc-TRIML2-5	NA	NA	NA	inter
CUST_19303_PI429285431	2.4630535	A	2.0226572	A	1.35697703001291	0	lncRNA	20969-2_{3001..4853}	lnc-IL34-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL34-2:1	chr16	 70805749	 70807601	+	lnc-IL34-2	lnc-IL34-2:1	ENSG00000214353.3	RP11-394B2.4	VAC14	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_VAC14:range=chr16:70721831-708348035'pad=0,hg19_refFlat_VAC14:range=chr16:70721831-708348035'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60chr16:70792749-70817154"	NA	inner
CUST_19019_PI429285431	3.9058912	P	3.716367	P	1.14038755467915	0	lncRNA	20709-1_{1..623}	lnc-CXCR3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CXCR3-1:2	chrX	 70883712	 70884334	-	lnc-CXCR3-1	lnc-CXCR3-1:2	ENSG00000237265	RP11-402P6.9	NA	NA	NA	inter
CUST_37826_PI429285431	5.7238493	P	5.982338	P	0.835963176921946	0	lncRNA	38919-1_{1..593}	n346347|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1897|NULL|-1.3136800|-0.1618503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346347|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1897|NULL|-1.3136800|-0.1618503	chr2	 85541905	 85542497	+	NA	NA	NA	NA	TCF7L1	NA	chr2:85531905-85537511	inter
CUST_29626_PI429285431	5.96577	P	5.6924253	P	1.20860657864608	0	lncRNA	31387-1_{1..544}	n333187|AF436089|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079647_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079647_04|5.4853700|-0.0270738	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333187|AF436089|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079647_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079647_04|5.4853700|-0.0270738	chr6	 29795824	 29796367	+	NA	NA	NA	NA	HLA-G	NA	chr6:29793906-29798899	inner
CUST_26640_PI429285431	1.1855791	A	0.9019682	A	1.21723768104244	0	lncRNA	28143-1_{1..3000}	lnc-C4orf42-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C4orf42-1:4	chr4	  1244047	  1247046	+	lnc-C4orf42-1	lnc-C4orf42-1:4	ENSG00000196810.4	CTBP1-AS1	CTBP1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00chr4:1234047-1242908"	NA	inter
CUST_35297_PI429285431	7.9518356	P	6.116662	P	3.56814340779619	0	lncRNA	36701-1_{1..2707}	n342319|BC030291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4811|NULL|-1.0625700|-0.4949645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342319|BC030291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4811|NULL|-1.0625700|-0.4949645	chr14	 50361134	 50363840	+	NA	NA	NA	NA	ARF6	NA	chr14:50359736-50363772	inner
LNCA_21_P0012121	0.87413555	A	0.87817186	A	0.99720615317813	0	lncRNA	XR_109599	XR_109599	XR_109599	NA	NA	LOC100505663	uncharacterized LOC100505663	ENST00000432633	THC2662387	NA	"PREDICTED: Homo sapiens hypothetical LOC100505663, transcript variant 1 (LOC100505663), miscRNA [XR_109599]"	chr20:38635014-38635073	hs|20q12	Agilent_HUMAN_G3V2	XR_109599	XR_109599	chr20	 38635014	 38635073	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9053_PI429285431	9.261469	P	9.706287	P	0.73467699234341	0	lncRNA	10577-1_{1..614}	lnc-POM121L4P-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-POM121L4P-1:12	chr22	 21058599	 21059212	+	lnc-POM121L4P-1	lnc-POM121L4P-1:12	ENSG00000226287	TMEM191A	PI4KA	NA	chr22:21061979-21068846	inter
CUST_22094_PI429285431	3.1772919	A	3.8357487	P	0.633555626770508	0	lncRNA	23699-1_{1..2337}	lnc-C1orf201-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf201-1:1	chr1	 24648156	 24650492	-	lnc-C1orf201-1	lnc-C1orf201-1:1	ENSG00000232298.1	RP11-10N16.3	GRHL3	NA	chr1:24645812-24658420	inner
CUST_48837_PI429285431	3.8314042	P	2.8245869	A	2.00947314909341	0	lncRNA	52675-1_{1..279}	hg19_lincRNAsTranscripts_TCONS_l2_00019225 range=chr3:36949827-36986437 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019225 range=chr3:36949827-36986437 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 36949827	 36950105	-	NA	NA	NA	NA	TRANK1	NA	chr3:36939827-36986548	inner
CUST_25985_PI429285431	1.0976272	A	1.1577921	A	0.959154481731038	0	lncRNA	27505-1_{1..3000}	lnc-NDUFS8-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFS8-1:6	chr11	 67795217	 67798216	+	lnc-NDUFS8-1	lnc-NDUFS8-1:6	ENSG00000006534.11	ALDH3B1	ALDH3B1	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.61;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr11:67785217-67796743"	NA	inner
LNCA_21_P0003828	5.89682	P	5.7043324	P	1.14273240064624	0	lncRNA	TCONS_00008770	NA	NA	NA	NA	XLOC_003483	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003483), lincRNA [TCONS_00008770]"	chr4:26860516-26860575	hs|4p15.2	Agilent_HUMAN_G3V2	TCONS_00008770	TCONS_00008770	chr4	 26860516	 26860575	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26327_PI429285431	0.8966549	A	1.457879	A	0.677726881003988	0	lncRNA	27834-1_{1..550}	lnc-SNURF-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNURF-1:2	chr15	 25247872	 25248421	+	lnc-SNURF-1	lnc-SNURF-1:2	ENSG00000224078.4	SNHG14	SNRPN	NA	chr15:25237872-25257977	inter
LNCA_19_P00321132	5.46277	P	5.777142	P	0.804200980378277	0	lncRNA	ENST00000506206	NA	BC050580	NA	Hs.509788	XLOC_005747	NA	ENST00000506206	THC2632358	NA	"BROAD Institute lincRNA (XLOC_005747), lincRNA [TCONS_00011504]"	chr6:53429028-53428969	hs|6p12.1	Agilent_HUMAN_G3V2	ENST00000506206	ENST00000506206	chr6	 53428969	 53429028	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36804_PI429285431	0.883148	A	1.3585505	A	0.719266092711414	0	lncRNA	37976-1_{1..473}	n345283|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_832|NULL|-1.2845100|-0.1991960	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345283|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_832|NULL|-1.2845100|-0.1991960	chr14	100701759	100702231	-	NA	NA	NA	NA	YY1	"hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00chr14:100705102-100714777"	NA	inter
LNCA_21_P0004867	0.8752009	A	0.8755915	A	0.99972929335893	0	lncRNA	TCONS_00011755	NA	NA	NA	NA	XLOC_005217	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005217), lincRNA [TCONS_00011755]"	chr6:27026627-27026686	hs|6p22.1	Agilent_HUMAN_G3V2	TCONS_00011755	TCONS_00011755	chr6	 27026627	 27026686	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24203_PI429285431	1.468178	A	0.9159056	A	1.46639360565608	0	lncRNA	25754-1_{1..754}	lnc-TYW5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TYW5-1:2	chr2	200775525	200776278	-	lnc-TYW5-1	lnc-TYW5-1:2	ENSG00000232732.3	AC073043.1	C2orf69	NA	chr2:200775979-200785678	inter
LNCA_21_P0005877	0.87502414	A	0.8767572	A	0.998799455578017	0	lncRNA	TCONS_00015114	NA	NA	NA	NA	XLOC_007170	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007170), lincRNA [TCONS_00015114]"	chr8:101440868-101440809	hs|8q22.2	Agilent_HUMAN_G3V2	TCONS_00015114	TCONS_00015114	chr8	101440809	101440868	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42610_PI429285431	6.035829	P	6.0601506	P	0.983282859980926	0	lncRNA	45472-1_{1..75}	ENST00000384304 ncrna:snoRNA chromosome:GRCh37:12:57038811:57038885:-1 gene:ENSG00000207031 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384304 ncrna:snoRNA chromosome:GRCh37:12:57038811:57038885:-1 gene:ENSG00000207031 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 57038811	 57038885	-	ENSG00000207031	ENST00000384304	NA	NA	BAZ2A	NA	chr12:57028811-57030163	inner
CUST_24150_PI429285431	3.441472	P	3.9106576	P	0.722372261152792	0	lncRNA	25702-1_{1..640}	lnc-LMBR1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-LMBR1-2:2	chr7	156433230	156433869	-	lnc-LMBR1-2	lnc-LMBR1-2:2	ENSG00000182648.7	AC073871.2	RNF32	NA	chr7:156433353-156443275	inter
CUST_44807_PI429285431	3.1367872	A	2.4745393	A	1.58254650985292	0	lncRNA	49341-1_{1..2561}	"gi|345478687|ref|NR_045102.1| Homo sapiens ring finger protein 146 (RNF146), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|345478687|ref|NR_045102.1| Homo sapiens ring finger protein 146 (RNF146), transcript variant 5, non-coding RNA"	Chr6	127587883	127590443	+	81847	NR_045102.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0012047	3.937733	P	4.2352986	P	0.813624146034259	0	lncRNA	TCONS_l2_00015630	NA	NA	NA	NA	XLOC_l2_007831	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007831), lincRNA [TCONS_l2_00015630]"	chr2:242459360-242459419	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_l2_00015630	TCONS_l2_00015630	chr2	242459360	242459419	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001079	0.871906	A	0.8754989	A	0.997512689989521	0	lncRNA	TCONS_00000424	NA	NA	NA	NA	XLOC_000625	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000625), lincRNA [TCONS_00000424]"	chr1:234851702-234851761	hs|1q42.3	Agilent_HUMAN_G3V2	TCONS_00000424	TCONS_00000424	chr1	234851702	234851761	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51630_PI429285431	2.6259944	A	2.4164948	A	1.15628705519643	0	lncRNA	55200-1_{1..655}	hg19_lincRNAsTranscripts_TCONS_l2_00010786 range=chr17:42004448-42015732 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010786 range=chr17:42004448-42015732 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 42004448	 42005102	+	NA	NA	NA	NA	PPY	NA	chr17:42018172-42019833	inter
CUST_26067_PI429285431	4.133016	P	4.3357124	P	0.868925022045187	0	lncRNA	27580-1_{1..287}	lnc-NRIP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NRIP2-2:1	chr12	  2912955	  2913241	-	lnc-NRIP2-2	lnc-NRIP2-2:1	ENSG00000258092.1	RP4-816N1.7	ITFG2	"hg19_refFlat_FKBP4:range=chr12:2904306-29124245'pad=0,hg19_refFlat_FKBP4:range=chr12:2904306-29124245'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20chr12:2921787-2923104"	NA	inner
CUST_45434_PI429285431	2.9681394	A	3.1180038	A	0.90133517580574	0	lncRNA	49852-1_{1..419}	"gi|310120406|ref|XR_108947.1| PREDICTED: Homo sapiens uncharacterized LOC100505986 (LOC100505986), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310120406|ref|XR_108947.1| PREDICTED: Homo sapiens uncharacterized LOC100505986 (LOC100505986), misc_RNA"	NA	NA	NA	NA	NA	XR_108947.1	NA	NA	NA	NA	NA	Unknown
CUST_4112_PI429285431	1.5673218	A	1.7006629	A	0.911717580365286	0	lncRNA	4073-1_{1..464}	"transcript_id ""ENST00000532563.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532563.2"" | genecode_v17"	chr11	128486570	128487033	-	ENSG00000255465.2	ENST00000532563.2	RP11-264E20.1	RP11-264E20.1-002	NA	NA	NA	inter
CUST_29754_PI429285431	6.8865147	P	7.4821577	P	0.66174945194196	0	lncRNA	31516-1_{1..302}	n333439|BC017818|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000089413|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000089413|-0.3887200|-0.1947161	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333439|BC017818|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000089413|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000089413|-0.3887200|-0.1947161	chr14	103589779	103590080	+	NA	NA	NA	NA	TNFAIP2	NA	chr14:103592664-103602908	inner
CUST_20603_PI429285431	4.639089	P	4.2022343	P	1.35364994030061	0	lncRNA	22242-1_{1..474}	lnc-ELN-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ELN-1:2	chr7	 73402729	 73403202	+	lnc-ELN-1	lnc-ELN-1:2	ENSG00000261467.1	RP11-731K22.1	NA	NA	NA	inter
CUST_26785_PI429285431	1.0238008	A	0.9069088	A	1.0843962280162	0	lncRNA	28290-1_{1..2194}	n323843|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057243|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057243|-1.1850300|-0.3519028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323843|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057243|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057243|-1.1850300|-0.3519028	chrX	 73080901	 73083094	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47908_PI429285431	5.211035	P	4.7630353	P	1.36414755121282	0	lncRNA	51800-1_{1..1698}	"gi|410171987|ref|XR_171518.1| PREDICTED: Homo sapiens putative POM121-like protein 1-like (LOC101060539), partial misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171987|ref|XR_171518.1| PREDICTED: Homo sapiens putative POM121-like protein 1-like (LOC101060539), partial misc_RNA"	NA	NA	NA	NA	NA	XR_171518.1	NA	NA	NA	NA	NA	Unknown
CUST_48803_PI429285431	2.993944	A	2.8823647	A	1.08041030087174	0	lncRNA	52641-1_{1..343}	hg19_lincRNAsTranscripts_TCONS_l2_00014322 range=chr2:241861970-241869675 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014322 range=chr2:241861970-241869675 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	241861970	241862312	+	NA	NA	NA	NA	LOC728763	NA	chr2:241868593-241879675	inter
CUST_26305_PI429285431	4.755129	P	4.5649214	P	1.14092788056061	0	lncRNA	27811-1_{1..488}	lnc-AP000892.4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP000892.4.1-1:1	chr11	117198553	117199040	-	lnc-AP000892.4.1-1	lnc-AP000892.4.1-1:1	ENSG00000250699.1	AP000892.4	CEP164	NA	chr11:117198571-117208754	inner
CUST_30255_PI429285431	9.032326	P	8.9852915	P	1.03313909344074	0	lncRNA	32030-1_{1..482}	n335131|AY187245|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250930|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250930|-0.1967370|-0.0955316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335131|AY187245|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250930|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250930|-0.1967370|-0.0955316	chr16	 50727537	 50728018	-	NA	NA	NA	NA	NOD2	"hg19_refFlat_NOD2:range=chr16:50731155-507657305'pad=0,hg19_refFlat_NOD2:range=chr16:50731155-507657305'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.30chr16:50731050-50743845"	NA	inner
CUST_4829_PI429285431	1.3661969	A	1.2516404	A	1.08264217849441	0	lncRNA	4772-1_{1..553}	"transcript_id ""ENST00000425648.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425648.1"" | genecode_v17"	chr14	 53836099	 53836651	+	ENSG00000237356.1	ENST00000425648.1	AL163953.3	AL163953.3-002	NA	NA	NA	inter
CUST_11627_PI429285431	3.948007	P	3.313695	A	1.55219735343519	0	lncRNA	13205-1_{1..916}	lnc-GOLGA8J-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GOLGA8J-1:1	chr15	 30241229	 30242144	+	lnc-GOLGA8J-1	lnc-GOLGA8J-1:1	XLOC_011198	linc-ARHGAP11B-2	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00"	NA	inter
LNCA_33_P3354792	1.4819508	A	0.9197089	A	1.47656196347286	0	lncRNA	XR_112948	XR_112948	XR_112948	   441179	Hs.192711	LOC441179	uncharacterized LOC441179	NA	THC2480473	NA	"PREDICTED: Homo sapiens hypothetical LOC441179 (LOC441179), miscRNA [XR_112948]"	chr6:168197421-168197480	hs|6q27	Agilent_HUMAN_G3V2	XR_112948	XR_112948	chr6	168197421	168197480	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45408_PI429285431	0.90189636	A	0.9224911	A	0.985826221392035	0	lncRNA	49834-2_{3001..5504}	"gi|223941893|ref|NR_026918.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 3 (PTPN3), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223941893|ref|NR_026918.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 3 (PTPN3), transcript variant 7, non-coding RNA"	Chr9	112140974	112143477	-	5774	NR_026918.1	NA	NA	NA	NA	NA	inter
CUST_12339_PI429285431	2.6559186	A	1.5647337	A	2.13048943902424	0	lncRNA	13951-1_{1..2815}	lnc-LEPROTL1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-LEPROTL1-4:3	chr8	 29654351	 29657165	+	lnc-LEPROTL1-4	lnc-LEPROTL1-4:3	XLOC_006756	linc-LEPROTL1-3	NA	NA	NA	inter
CUST_47379_PI429285431	0.90134805	A	0.9020854	A	0.99948903851172	0	lncRNA	51427-1_{1..779}	"gi|336455086|ref|NR_038886.1| Homo sapiens uncharacterized LOC100506385 (LOC100506385), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336455086|ref|NR_038886.1| Homo sapiens uncharacterized LOC100506385 (LOC100506385), transcript variant 2, non-coding RNA"	Chr21	 36118122	 36118900	+	100506385	NR_038886.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
LNCA_21_P0009246	0.8902001	A	2.1937973	A	0.405114828960006	0	lncRNA	TCONS_00025386	NA	NA	NA	NA	XLOC_012199	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012199), lincRNA [TCONS_00025386]"	chr17:38851062-38851121	hs|17q21.2	Agilent_HUMAN_G3V2	TCONS_00025386	TCONS_00025386	chr17	 38851062	 38851121	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50575_PI429285431	5.857446	P	6.334901	P	0.71824353149009	0	lncRNA	54268-1_{1..338}	hg19_lincRNAsTranscripts_TCONS_l2_00030916 range=chrY:27610801-27624537 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030916 range=chrY:27610801-27624537 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrY	 27610801	 27611138	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009577	1.1450672	A	0.89794713	A	1.18683556933934	0	lncRNA	TCONS_00026558	NA	NA	NA	NA	XLOC_012879	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012879), lincRNA [TCONS_00026558]"	chr18:71314851-71075944	hs|18q22.3	Agilent_HUMAN_G3V2	TCONS_00026558	TCONS_00026558	chr18	 71075944	 71314851	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51128_PI429285431	1.374348	A	1.811305	A	0.738691048392725	0	lncRNA	54759-1_{1..791}	hg19_lincRNAsTranscripts_TCONS_l2_00007344 range=chr13:114583354-114586518 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007344 range=chr13:114583354-114586518 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	114583354	114584144	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15984_PI429285431	1.1981717	A	0.920785	A	1.21199748071846	0	lncRNA	17683-1_{1..458}	lnc-ZSWIM2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZSWIM2-4:1	chr2	186817485	186817942	-	lnc-ZSWIM2-4	lnc-ZSWIM2-4:1	XLOC_002427	linc-NCKAP1-1	NA	NA	NA	inter
CUST_31722_PI429285431	5.816268	P	5.119578	P	1.62078193581792	0	lncRNA	33463-1_{1..2134}	n338251|BC039097|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|644|NULL|-0.9329330|-0.2262232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338251|BC039097|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|644|NULL|-0.9329330|-0.2262232	chr14	 35343551	 35345684	+	NA	NA	NA	NA	BAZ1A	"hg19_refFlat_BAZ1A:range=chr14:35222714-353438105'pad=0,hg19_refFlat_BAZ1A:range=chr14:35222714-353438105'pad=0 3'pad=0 strand=- repeatMasking=none,-98.00chr14:35333551-35344853"	NA	inner
CUST_29621_PI429285431	6.6832137	P	6.9749537	P	0.816916201066658	0	lncRNA	31382-1_{1..229}	n333182|AF424052|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079423|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079423|-1.2352200|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333182|AF424052|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079423|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079423|-1.2352200|-1.0000000	chr4	154605404	154605632	+	NA	NA	NA	NA	TLR2	NA	chr4:154605441-154619209	inner
CUST_17360_PI429285431	4.1625414	P	4.6396027	P	0.718439561182452	0	lncRNA	19080-1_{1..651}	lnc-TRPM1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRPM1-1:10	chr15	 31521475	 31522125	-	lnc-TRPM1-1	lnc-TRPM1-1:10	XLOC_011413	linc-TRPM1	LOC283710	NA	chr15:31514970-31523050	inner
CUST_16594_PI429285431	0.8945657	A	0.9074318	A	0.991121547372294	0	lncRNA	18295-1_{1..334}	lnc-RHOXF1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RHOXF1-1:4	chrX	119253450	119253783	-	lnc-RHOXF1-1	lnc-RHOXF1-1:4	XLOC_008222	linc-RHOXF1-1	RHOXF1	NA	chrX:119243450-119249847	inter
CUST_11961_PI429285431	0.8859603	A	0.8815391	A	1.0030692428249	0	lncRNA	13540-1_{1..3000}	lnc-C20orf187-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf187-1:1	chr20	 10981408	 10984407	+	lnc-C20orf187-1	lnc-C20orf187-1:1	XLOC_013463	linc-BTBD3-1	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20"	NA	inter
CUST_34081_PI429285431	7.522999	P	8.539648	P	0.494263062687244	0	lncRNA	35610-1_{1..451}	n340906|L32866|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3371|NULL|-1.1439400|-0.3127467	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340906|L32866|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3371|NULL|-1.1439400|-0.3127467	chr17	 76220062	 76220512	-	NA	NA	NA	NA	BIRC5	NA	chr17:76210277-76221716	inner
CUST_39797_PI429285431	7.659019	P	7.599658	P	1.04200413305331	0	lncRNA	40707-1_{1..761}	n406192|NR_003614|lncRNA|Homosapiens||RefGeneNoncode|NR_003614||1.5122500|-0.2526356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406192|NR_003614|lncRNA|Homosapiens||RefGeneNoncode|NR_003614||1.5122500|-0.2526356	chr7	 72476679	 72477439	+	NA	NA	NA	NA	STAG3L3	NA	chr7:72469013-72476455	inter
LNCA_21_P0003745	0.87381226	A	0.8771684	A	0.997676404757932	0	lncRNA	TCONS_00008497	NA	NA	NA	NA	XLOC_003970	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003970), lincRNA [TCONS_00008497]"	chr4:64329209-64329150	hs|4q13.1	Agilent_HUMAN_G3V2	TCONS_00008497	TCONS_00008497	chr4	 64329150	 64329209	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37151_PI429285431	0.8951358	A	0.90294874	A	0.994599120146013	0	lncRNA	38269-2_{3001..3160}	n345588|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1137|NULL|-1.3811800|-0.2372082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345588|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1137|NULL|-1.3811800|-0.2372082	chr3	 37894173	 37894332	-	NA	NA	NA	NA	CTDSPL	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60chr3:37903669-37911300"	NA	inter
LNCA_21_P0009616	2.5461469	A	2.2667696	A	1.21367092334571	0	lncRNA	TCONS_00026649	NA	NA	NA	NA	XLOC_012726	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012726), lincRNA [TCONS_00026649]"	chr18:74240890-74253678	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026649	TCONS_00026649	chr18	 74240890	 74253678	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33150_PI429285431	4.0349555	P	4.021505	P	1.00936677233855	0	lncRNA	34746-1_{1..615}	n339840|BC009735|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2288|NULL|-0.6625760|-0.2029762	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339840|BC009735|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2288|NULL|-0.6625760|-0.2029762	chr18	 33759958	 33760572	-	NA	NA	NA	NA	MOCOS	NA	chr18:33767480-33777398	inter
CUST_45123_PI429285431	0.89793885	A	0.88741934	A	1.00731821691413	0	lncRNA	49604-1_{1..1627}	"gi|341915413|ref|XR_132524.1| PREDICTED: Homo sapiens uncharacterized LOC100506557 (LOC100506557), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915413|ref|XR_132524.1| PREDICTED: Homo sapiens uncharacterized LOC100506557 (LOC100506557), misc_RNA"	Chr7	157318483	157320109	+	100506557	XR_132524.2	NA	NA	NA	NA	NA	inter
CUST_42029_PI429285431	0.889612	A	0.9005275	A	0.992462502441968	0	lncRNA	43902-1_{1..75}	ENST00000579223 ncrna:miRNA chromosome:GRCh37:2:207647958:207648032:1 gene:ENSG00000263468 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579223 ncrna:miRNA chromosome:GRCh37:2:207647958:207648032:1 gene:ENSG00000263468 gene_biotype:miRNA transcript_biotype:miRNA	chr2	207647958	207648032	+	ENSG00000263468	ENST00000579223	NA	NA	FASTKD2	NA	chr2:207637958-207658032	inner
CUST_48142_PI429285431	7.077647	P	6.1952047	P	1.84349346214903	0	lncRNA	52009-2_{3001..3075}	"gi|410169891|ref|XR_133016.3| PREDICTED: Homo sapiens G/T mismatch-specific thymine DNA glycosylase-like (LOC732360), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410169891|ref|XR_133016.3| PREDICTED: Homo sapiens G/T mismatch-specific thymine DNA glycosylase-like (LOC732360), misc_RNA"	NA	NA	NA	NA	NA	XR_133016.3	NA	NA	NA	NA	NA	Unknown
CUST_10440_PI429285431	2.2581398	A	1.3341243	A	1.89738901530402	0	lncRNA	11967-1_{1..478}	lnc-ZFAT-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFAT-5:1	chr8	137255534	137256011	-	lnc-ZFAT-5	lnc-ZFAT-5:1	XLOC_007235	linc-ZFAT-4	NA	NA	NA	inter
LNCA_21_P0004348	0.8742105	A	0.87419015	A	1.00001410564461	0	lncRNA	TCONS_00010227	NA	NA	NA	NA	XLOC_004693	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004693), lincRNA [TCONS_00010227]"	chr5:553687-553603	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00010227	TCONS_00010227	chr5	   553603	   553687	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25262_PI429285431	5.5696607	P	6.176281	P	0.656733384304537	0	lncRNA	26793-1_{1..349}	lnc-GPR126-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR126-1:1	chr6	143074643	143074991	+	lnc-GPR126-1	lnc-GPR126-1:1	ENSG00000233138.1	RP1-67K17.3	HIVEP2	"hg19_refFlat_HIVEP2:range=chr6:143074244-1430958755'pad=0,hg19_refFlat_HIVEP2:range=chr6:143074244-1430958755'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50chr6:143072604-143084896"	NA	inner
CUST_7573_PI429285431	2.205961	A	0.89410645	A	2.48260467855727	0	lncRNA	9208-1_{1..940}	lnc-ANKRD40-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD40-1:1	chr17	 48844824	 48845763	-	lnc-ANKRD40-1	lnc-ANKRD40-1:1	ENSG00000167117	C17orf73	NA	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_18595_PI429285431	11.800243	P	11.402317	P	1.31761236585288	0	lncRNA	20302-1_{1..1000}	lnc-MEP1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MEP1A-1:1	chr6	 46726460	 46727459	+	lnc-MEP1A-1	lnc-MEP1A-1:1	ENSG00000230062	RP11-268F1.2	LOC100287718	NA	chr6:46716460-46726955	inner
LNCA_21_P0000960	6.133462	P	6.2752085	P	0.906421194090584	0	lncRNA	ENST00000443579	NA	NA	NA	NA	XLOC_000107	NA	ENST00000443579	NA	NA	"BROAD Institute lincRNA (XLOC_000107), lincRNA [TCONS_00000171]"	chr1:27852333-27852392	hs|1p36.11	Agilent_HUMAN_G3V2	ENST00000443579	ENST00000443579	chr1	 27852333	 27852392	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1317_PI429285431	2.8543067	A	3.2597728	P	0.754992333546558	0	lncRNA	1306-1_{1..424}	"transcript_id ""ENST00000436306.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436306.1"" | genecode_v17"	chr3	 21998628	 21999051	+	ENSG00000223351.1	ENST00000436306.1	ZNF385D-AS2	ZNF385D-AS2-002	LOC100505836	NA	chr3:21988628-22031320	inter
CUST_44982_PI429285431	8.484856	P	8.684369	P	0.870844478279249	0	lncRNA	49492-1_{1..1731}	"gi|341865584|ref|NR_040584.1| Homo sapiens stromal antigen 3-like 2 (STAG3L2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|341865584|ref|NR_040584.1| Homo sapiens stromal antigen 3-like 2 (STAG3L2), non-coding RNA"	NW_003871064.1	  2411226	  2412956	-	442582	NR_040584.2	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_LOC100289561:range=chr7:102006509-1020209875'pad=0,hg19_refFlat_LOC100289561:range=chr7:102006509-1020209875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50"	NA	Unknown
LNCA_21_P0003454	3.779527	P	4.004886	P	0.855382146042737	0	lncRNA	ENST00000467484	XR_112626	XR_112626	NA	Hs.548859	XLOC_003912	NA	ENST00000467484	THC2663895	NA	"PREDICTED: Homo sapiens hypothetical LOC100506048, transcript variant 1 (LOC100506048), miscRNA [XR_112626]"	chr4:26861487-26861428	hs|4p15.2	Agilent_HUMAN_G3V2	ENST00000467484	ENST00000467484	chr4	 26861428	 26861487	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13902_PI429285431	1.1500667	A	1.2844315	A	0.911070878043003	0	lncRNA	15549-1_{1..945}	lnc-AP001496.1-8:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP001496.1-8:6	chr18	  5795647	  5796591	+	lnc-AP001496.1-8	lnc-AP001496.1-8:6	XLOC_012616	linc-ARHGAP28-4	NA	NA	NA	inter
CUST_31425_PI429285431	0.8934055	A	0.89961326	A	0.995706352831712	0	lncRNA	33196-1_{1..437}	n337891|AF086488|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|274|NULL|-1.1027000|-0.4365542	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337891|AF086488|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|274|NULL|-1.1027000|-0.4365542	chr1	 41596233	 41596669	-	NA	NA	NA	NA	SCMH1	NA	chr1:41586233-41606667	inner
CUST_48703_PI429285431	7.1414504	P	7.2437906	P	0.9315207427356	0	lncRNA	52545-1_{1..242}	hg19_lincRNAsTranscripts_TCONS_l2_00014844 range=chr2:114600898-114619059 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014844 range=chr2:114600898-114619059 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	114600898	114601139	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60"	NA	inter
CUST_11294_PI429285431	1.4692829	A	1.4725987	A	0.997704301733874	0	lncRNA	12855-1_{1..847}	lnc-RP11-552I14.1.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-552I14.1.1-1:5	chr12	103557340	103558186	+	lnc-RP11-552I14.1.1-1	lnc-RP11-552I14.1.1-1:5	XLOC_009858	linc-STAB2-2	NA	NA	NA	inter
CUST_10760_PI429285431	2.5147738	A	1.7239164	A	1.73010236457709	0	lncRNA	12296-1_{1..229}	lnc-ZNF32-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF32-3:1	chr10	 44407741	 44407969	-	lnc-ZNF32-3	lnc-ZNF32-3:1	XLOC_008792	linc-ZNF32-1	NA	NA	NA	inter
CUST_33358_PI429285431	5.976457	P	5.830519	P	1.10644980225175	0	lncRNA	34938-1_{1..2311}	n340076|AK021415|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2531|NULL|-0.4814460|-0.3437946	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340076|AK021415|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2531|NULL|-0.4814460|-0.3437946	chr10	 76672543	 76674853	+	NA	NA	NA	NA	DUPD1	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20chr10:76797594-76818272"	NA	inner
LNCA_21_P0009499	0.90615284	A	0.9302151	A	0.983459631572264	0	lncRNA	TCONS_00026365	NA	NA	NA	NA	XLOC_012715	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012715), lincRNA [TCONS_00026365]"	chr18:71105356-71109022	hs|18q22.3	Agilent_HUMAN_G3V2	TCONS_00026365	TCONS_00026365	chr18	 71105356	 71109022	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008025	0.90753204	A	0.9322468	A	0.983014934461614	0	lncRNA	TCONS_00021710	NA	NA	NA	NA	XLOC_010294	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010294), lincRNA [TCONS_00021710]"	chr13:20710839-20710898	hs|13q12.11	Agilent_HUMAN_G3V2	TCONS_00021710	TCONS_00021710	chr13	 20710839	 20710898	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9389_PI429285431	7.613439	P	7.0959864	P	1.43142551413231	0	lncRNA	10893-1_{1..354}	lnc-C4orf27-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C4orf27-1:1	chr4	170782597	170782950	-	lnc-C4orf27-1	lnc-C4orf27-1:1	XLOC_004153	linc-C4orf27-2	NA	NA	NA	inter
CUST_37605_PI429285431	1.6245723	A	0.92836744	A	1.62023700155673	0	lncRNA	38703-1_{1..2597}	n346082|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1632|NULL|-1.2815200|-0.3121371	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346082|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1632|NULL|-1.2815200|-0.3121371	chr19	 56879647	 56882243	+	NA	NA	NA	NA	ZNF582	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60chr19:56894648-56900224"	NA	inter
LNCA_21_P0005874	0.90793455	A	0.9326258	A	0.98303095369559	0	lncRNA	TCONS_00015108	NA	NA	NA	NA	XLOC_007164	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007164), lincRNA [TCONS_00015108]"	chr8:96223062-96223003	hs|8q22.1	Agilent_HUMAN_G3V2	TCONS_00015108	TCONS_00015108	chr8	 96223003	 96223062	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3822_PI429285431	1.3964103	A	0.9847975	A	1.33017199284632	0	lncRNA	3790-1_{1..537}	"transcript_id ""ENST00000602332.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602332.1"" | genecode_v17"	chr10	126133808	126134344	-	ENSG00000269962.1	ENST00000602332.1	RP13-238F13.5	RP13-238F13.5-001	NKX1-2	NA	chr10:126135998-126138550	inter
CUST_44931_PI429285431	1.4748256	A	2.8709	A	0.37996161891735	0	lncRNA	49445-1_{1..3000}	"gi|195539386|ref|NR_003655.2| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide J4, pseudogene (POLR2J4), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|195539386|ref|NR_003655.2| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide J4, pseudogene (POLR2J4), non-coding RNA"	NA	NA	NA	NA	NA	NR_003655.2	NA	NA	NA	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_UBE2D4:range=chr7:43966132-439922945'pad=0,hg19_refFlat_UBE2D4:range=chr7:43966132-439922945'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-62.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20"	NA	Unknown
LNCA_21_P0007418	1.3664991	A	0.9249734	A	1.35803974240162	0	lncRNA	TCONS_00019800	NA	NA	NA	NA	XLOC_009599	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009599), lincRNA [TCONS_00019800]"	chr11:128053754-127957755	hs|11q24.3	Agilent_HUMAN_G3V2	TCONS_00019800	TCONS_00019800	chr11	127957755	128053754	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48840_PI429285431	0.8922043	A	0.9001526	A	0.994505806855578	0	lncRNA	52678-1_{1..1522}	hg19_lincRNAsTranscripts_TCONS_l2_00019350 range=chr3:72084988-72149124 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019350 range=chr3:72084988-72149124 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 72084988	 72086509	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49576_PI429285431	0.9215814	A	1.1615123	A	0.846785869445391	0	lncRNA	53365-1_{1..870}	hg19_lincRNAsTranscripts_TCONS_l2_00024925 range=chr6:134841474-134845741 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024925 range=chr6:134841474-134845741 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	134841474	134842343	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30636_PI429285431	11.267631	P	10.823767	P	1.36024261898817	0	lncRNA	32418-1_{1..299}	n335998|X75683|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323535|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323535|-1.4435700|-0.3329293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335998|X75683|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323535|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323535|-1.4435700|-0.3329293	chr4	 83345771	 83346069	-	NA	NA	NA	NA	ENOPH1	NA	chr4:83351726-83357224	inter
CUST_33746_PI429285431	0.9112562	A	0.92670804	A	0.989346752773843	0	lncRNA	35303-1_{1..3000}	n340525|AL832324|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2987|NULL|-0.4978800|-0.2907856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340525|AL832324|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2987|NULL|-0.4978800|-0.2907856	chr5	 79025108	 79028107	-	NA	NA	NA	NA	CMYA5	"hg19_refFlat_CMYA5:range=chr5:78985731-790954395'pad=0,hg19_refFlat_CMYA5:range=chr5:78985731-790954395'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.70chr5:79015108-79039333"	NA	inner
CUST_10275_PI429285431	5.626434	P	5.603175	P	1.01625256948239	0	lncRNA	11800-1_{1..598}	lnc-CCDC74A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC74A-1:1	chr2	132302619	132303216	+	lnc-CCDC74A-1	lnc-CCDC74A-1:1	XLOC_001676	linc-C2orf27A-2	NA	NA	NA	inter
CUST_38854_PI429285431	1.7907642	A	1.0794677	A	1.63727481828035	0	lncRNA	39844-2_{3001..3093}	n384704|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kke.2||-1.0164100|-0.3069806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384704|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kke.2||-1.0164100|-0.3069806	chr5	 92748064	 92748156	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22187_PI429285431	2.8077965	A	3.0343747	P	0.854659580743028	0	lncRNA	23787-1_{1..456}	lnc-TMEM194B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM194B-1:2	chr2	191566189	191566644	-	lnc-TMEM194B-1	lnc-TMEM194B-1:2	ENSG00000228509.1	AC006460.2	NAB1	NA	chr2:191556189-191557492	inter
CUST_10443_PI429285431	0.88471663	A	0.8862244	A	0.998955439409188	0	lncRNA	11969-1_{1..1970}	lnc-SIPA1L2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SIPA1L2-1:3	chr1	232878113	232880082	-	lnc-SIPA1L2-1	lnc-SIPA1L2-1:3	XLOC_001259	linc-SIPA1L2	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-21.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70"	NA	inter
CUST_30172_PI429285431	0.88763547	A	0.89736927	A	0.993275753579402	0	lncRNA	31946-1_{1..520}	n334864|AJ315537|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247165_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247165_06|-1.2390300|-0.3118626	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334864|AJ315537|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000247165_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000247165_06|-1.2390300|-0.3118626	chr6	  2968703	  2969222	+	NA	NA	NA	NA	SERPINB6	"hg19_refFlat_SERPINB6:range=chr6:2948532-29710385'pad=0,hg19_refFlat_SERPINB6:range=chr6:2948532-29710385'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20chr6:2958703-2972399"	NA	inner
LNCA_21_P0002615	0.8812657	A	0.89269155	A	0.992111483240291	0	lncRNA	ENST00000427615	NA	NA	NA	NA	XLOC_001707	NA	ENST00000427615	THC2669147	NA	"BROAD Institute lincRNA (XLOC_001707), lincRNA [TCONS_00004917]"	chr2:151486169-151486228	hs|2q23.3	Agilent_HUMAN_G3V2	ENST00000427615	ENST00000427615	chr2	151486169	151486228	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15056_PI429285431	3.2266839	A	0.8981945	A	5.02279153880442	0	lncRNA	16719-1_{1..408}	lnc-C13orf44-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C13orf44-1:3	chr13	 44681814	 44682221	-	lnc-C13orf44-1	lnc-C13orf44-1:3	XLOC_010585	linc-CCDC122-3	NA	NA	NA	inter
CUST_30682_PI429285431	0.8759837	A	0.87640125	A	0.999710618273729	0	lncRNA	32464-1_{1..301}	n336167|X92063|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324541|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324541|0.6768770|-0.1096424	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336167|X92063|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324541|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324541|0.6768770|-0.1096424	chr14	 22392627	 22392927	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004907	0.8748015	A	0.8800121	A	0.996394801690224	0	lncRNA	TCONS_00011887	NA	NA	NA	NA	XLOC_005386	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005386), lincRNA [TCONS_00011887]"	chr6:91341277-91344282	hs|6q15	Agilent_HUMAN_G3V2	TCONS_00011887	TCONS_00011887	chr6	 91341277	 91344282	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33795_PI429285431	3.2667148	P	4.0133142	P	0.596006760346569	0	lncRNA	35347-2_{3001..4030}	n340583|BX537598|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3045|NULL|-1.2447000|-0.3695800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n340583|BX537598|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3045|NULL|-1.2447000|-0.3695800	chr5	110021946	110022975	-	NA	NA	NA	NA	TMEM232	NA	chr5:110008946-110032955	inner
CUST_31224_PI429285431	5.26419	P	3.117845	A	4.42704795134973	0	lncRNA	33015-2_{3001..4935}	n337672|D86969|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|54|NULL|8.2041100|-0.2955297	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337672|D86969|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|54|NULL|8.2041100|-0.2955297	chrX	 46774867	 46776801	+	NA	NA	NA	NA	PHF16	NA	chrX:46771736-46920641	inner
LNCA_21_P0006895	0.8738567	A	1.0607675	A	0.878484782156357	0	lncRNA	TCONS_00018283	NA	NA	NA	NA	XLOC_008561	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008561), lincRNA [TCONS_00018283]"	chr10:92869250-92872273	hs|10q23.31	Agilent_HUMAN_G3V2	TCONS_00018283	TCONS_00018283	chr10	 92869250	 92872273	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28502_PI429285431	6.245475	P	6.4282303	P	0.881018793796916	0	lncRNA	30170-1_{1..1013}	n325846|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051077|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051077|-0.0293554|-0.0128187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325846|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051077|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051077|-0.0293554|-0.0128187	chr10	134097226	134098238	-	NA	NA	NA	NA	STK32C	NA	chr10:134087226-134114978	inner
CUST_17545_PI429285431	3.5400116	P	2.9947064	P	1.45932903048384	0	lncRNA	19271-1_{1..390}	lnc-RALGAPA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RALGAPA2-1:1	chr20	 20702866	 20703255	-	lnc-RALGAPA2-1	lnc-RALGAPA2-1:1	XLOC_013674	linc-RALGAPA2-3	RALGAPA2	"hg19_refFlat_LLPH:range=chr12:66517620-665228865'pad=0,hg19_refFlat_LLPH:range=chr12:66517620-665228865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30chr20:20692866-20693266"	NA	inter
CUST_32707_PI429285431	0.88043284	A	0.8897623	A	0.993554175139521	0	lncRNA	34351-1_{1..1777}	n339338|AK057855|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1770|NULL|-0.8119320|-0.2541323	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339338|AK057855|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1770|NULL|-0.8119320|-0.2541323	chr3	 44157311	 44159087	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16711_PI429285431	2.823889	A	3.1322951	A	0.807533435393486	0	lncRNA	18417-1_{1..918}	lnc-AL137145.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AL137145.1-2:2	chr10	  6627520	  6628437	+	lnc-AL137145.1-2	lnc-AL137145.1-2:2	XLOC_008370	linc-ITIH2-10	NA	NA	NA	inter
CUST_36025_PI429285431	0.8791052	A	0.8841685	A	0.996496539370733	0	lncRNA	37355-2_{3001..4439}	n344635|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_183|NULL|-1.3953800|-0.2248374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344635|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_183|NULL|-1.3953800|-0.2248374	chr6	  3901391	  3902829	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10"	NA	inter
CUST_51494_PI429285431	8.996065	P	9.265681	P	0.829540313947807	0	lncRNA	55070-1_{1..562}	hg19_lincRNAsTranscripts_TCONS_l2_00010222 range=chr16:64294226-64294926 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010222 range=chr16:64294226-64294926 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 64294226	 64294787	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42080_PI429285431	0.90017784	A	0.9085653	A	0.994203122857201	0	lncRNA	44007-1_{1..87}	ENST00000384866 ncrna:miRNA chromosome:GRCh37:20:61809852:61809938:1 gene:ENSG00000207598 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384866 ncrna:miRNA chromosome:GRCh37:20:61809852:61809938:1 gene:ENSG00000207598 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 61809852	 61809938	+	ENSG00000207598	ENST00000384866	NA	NA	NA	NA	NA	inter
CUST_25619_PI429285431	5.5567317	P	5.7828364	P	0.85494013048953	0	lncRNA	27149-1_{1..492}	lnc-TEFM-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TEFM-5:1	chr17	 29422245	 29422736	-	lnc-TEFM-5	lnc-TEFM-5:1	ENSG00000264107.1	RP11-848P1.5	NF1	"hg19_refFlat_NF1:range=chr17:29422328-297011735'pad=0,hg19_refFlat_NF1:range=chr17:29422328-297011735'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10;hg19_refFlat_NF1:range=chr17:29422328-295490085'pad=0,hg19_refFlat_NF1:range=chr17:29422328-295490085'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10chr17:29421945-29432468"	NA	inner
CUST_27413_PI429285431	0.89508706	A	1.1175631	A	0.857093178547515	0	lncRNA	28978-1_{1..1017}	n324581|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039923|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039923|0.0253843|-0.2705030	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324581|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039923|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039923|0.0253843|-0.2705030	chr6	 15084997	 15086013	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30"	NA	inter
CUST_40838_PI429285431	0.8900933	A	0.89249706	A	0.998335227806362	0	lncRNA	41541-1_{1..1316}	n410610|NR_037860_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037860_2||-1.0856600|-0.2244822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410610|NR_037860_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037860_2||-1.0856600|-0.2244822	chr6	  3393401	  3394716	+	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00chr6:3383401-3407082"	NA	inner
CUST_38331_PI429285431	7.637291	P	7.697044	P	0.959428366456293	0	lncRNA	39377-1_{1..736}	n382047|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vem.1||-0.8575490|-0.1728884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382047|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vem.1||-0.8575490|-0.1728884	chr13	 50760015	 50760750	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010664	0.8683608	A	0.8692616	A	0.999375807908738	0	lncRNA	ENST00000423844	NA	NA	NA	NA	XLOC_l2_001233	NA	ENST00000423844	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001233), lincRNA [TCONS_l2_00001682]"	chr1:185300510-185300451	hs|1q25.3	Agilent_HUMAN_G3V2	ENST00000423844	ENST00000423844	chr1	185300451	185300510	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25205_PI429285431	1.6419601	A	3.1910248	A	0.341731537136528	0	lncRNA	26736-1_{1..871}	lnc-LENG9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LENG9-1:2	chr19	 54959740	 54960610	-	lnc-LENG9-1	lnc-LENG9-1:2	ENSG00000226696.1	LENG8-AS1	LENG8	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20chr19:54960065-54970192"	NA	inner
CUST_38299_PI429285431	1.2779144	A	0.88455474	A	1.31344852380301	0	lncRNA	39351-2_{3001..4335}	n381970|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ujx.1||2.1918300|-0.2142347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381970|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ujx.1||2.1918300|-0.2142347	chr12	132605690	132607024	+	NA	NA	NA	NA	DDX51	"hg19_refFlat_PLAC8:range=chr4:84015840-840290745'pad=0,hg19_refFlat_PLAC8:range=chr4:84015840-840290745'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr12:132621139-132623429"	NA	inter
CUST_20804_PI429285431	0.9008081	A	0.9207777	A	0.986253486286634	0	lncRNA	22435-1_{1..539}	lnc-LIFR-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIFR-3:2	chr5	 38403337	 38403875	-	lnc-LIFR-3	lnc-LIFR-3:2	ENSG00000248572.1	EGFLAM-AS2	EGFLAM	NA	chr5:38393337-38413464	inner
CUST_39486_PI429285431	1.0693051	A	0.9082531	A	1.11810215072596	0	lncRNA	40433-1_{1..1128}	n387178|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010zpd.1||1.8332100|-0.2656616	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387178|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010zpd.1||1.8332100|-0.2656616	chr2	243030843	243031970	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47790_PI429285431	0.9174139	A	0.9157747	A	1.00113685258592	0	lncRNA	51711-1_{1..863}	"gi|346644735|ref|NR_045129.1| Homo sapiens taxilin gamma 2, pseudogene (TXLNG2P), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|346644735|ref|NR_045129.1| Homo sapiens taxilin gamma 2, pseudogene (TXLNG2P), transcript variant 2, non-coding RNA"	ChrY	 21729244	 21730106	+	246126	NR_045129.1	NA	NA	NA	NA	NA	inter
CUST_24428_PI429285431	2.7139368	A	2.6232436	A	1.06488172416919	0	lncRNA	25981-1_{1..629}	lnc-LRTM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRTM2-1:1	chr12	  2120001	  2120629	+	lnc-LRTM2-1	lnc-LRTM2-1:1	ENSG00000203593.3	RP5-1096D14.6	DCP1B	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-25.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.82;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50chr12:2110001-2113677"	NA	inter
CUST_33069_PI429285431	1.2193706	A	1.1797726	A	1.02782738761685	0	lncRNA	34677-1_{1..289}	n339756|BC013933|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2203|NULL|-0.9472230|-0.1974637	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339756|BC013933|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2203|NULL|-0.9472230|-0.1974637	chr20	 62276427	 62276715	-	NA	NA	NA	NA	STMN3	NA	chr20:62271061-62284780	inner
CUST_23202_PI429285431	4.3165975	P	4.207814	P	1.07831860019982	0	lncRNA	24774-1_{1..486}	lnc-OBFC2A-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OBFC2A-5:1	chr2	192901411	192901896	+	lnc-OBFC2A-5	lnc-OBFC2A-5:1	ENSG00000233766.1	AC098617.2	TMEFF2	"hg19_refFlat_SDPR:range=chr2:192700649-1927116515'pad=0,hg19_refFlat_SDPR:range=chr2:192700649-1927116515'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00chr2:192891411-192911485"	NA	inner
CUST_12248_PI429285431	0.91814405	A	0.91619086	A	1.00135476500771	0	lncRNA	13854-1_{1..1131}	lnc-CMPK2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMPK2-1:3	chr2	  6970099	  6971229	-	lnc-CMPK2-1	lnc-CMPK2-1:3	XLOC_001966	linc-RNASEH1-12	NA	NA	NA	inter
CUST_51228_PI429285431	0.9097274	A	1.0746106	A	0.892000732511081	0	lncRNA	54846-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008416 range=chr15:23094157-23106207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008416 range=chr15:23094157-23106207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 23094157	 23097156	+	NA	NA	NA	NA	NIPA1	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70chr15:23084157-23086843"	NA	inter
CUST_16293_PI429285431	1.6827507	A	1.0245348	A	1.57812983191548	0	lncRNA	17999-1_{1..937}	lnc-TREM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TREM1-1:1	chr6	 41349787	 41350723	-	lnc-TREM1-1	lnc-TREM1-1:1	XLOC_005718	linc-TREM1-2	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20"	NA	inter
LNCA_21_P0001215	0.8997675	A	0.9197767	A	0.986226415352762	0	lncRNA	ENST00000425896	NA	NA	NA	NA	XLOC_001170	NA	ENST00000425896	NA	NA	"BROAD Institute lincRNA (XLOC_001170), lincRNA [TCONS_00000716]"	chr1:206214585-206214526	hs|1q32.1	Agilent_HUMAN_G3V2	ENST00000425896	ENST00000425896	chr1	206214526	206214585	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22135_PI429285431	6.239277	P	6.3998704	P	0.894657010699662	0	lncRNA	23737-1_{1..551}	lnc-DIO2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DIO2-3:1	chr14	 80099631	 80100181	-	lnc-DIO2-3	lnc-DIO2-3:1	ENSG00000259106.1	RP11-242P2.2	NRXN3	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60chr14:80089631-80109654"	NA	inner
CUST_22263_PI429285431	0.9108678	A	1.0909722	A	0.882639122182869	0	lncRNA	23864-1_{1..845}	lnc-CALCOCO2-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALCOCO2-7:1	chr17	 46636948	 46637792	+	lnc-CALCOCO2-7	lnc-CALCOCO2-7:1	ENSG00000239552.2	HOXB-AS2	HOXB3	NA	chr17:46626948-46647695	inner
CUST_26121_PI429285431	0.89990306	A	0.9137353	A	0.990458038046051	0	lncRNA	27632-1_{1..405}	lnc-PLAA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLAA-1:1	chr9	 26956125	 26956529	-	lnc-PLAA-1	lnc-PLAA-1:1	ENSG00000234676.1	RP11-337A23.3	IFT74	NA	chr9:26947037-26966293	inner
CUST_1537_PI429285431	0.8918243	A	0.8981235	A	0.99564324559073	0	lncRNA	1524-1_{1..563}	"transcript_id ""ENST00000498616.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000498616.1"" | genecode_v17"	chr3	164924750	164925312	+	ENSG00000244128.1	ENST00000498616.1	RP11-85M11.2	RP11-85M11.2-003	NA	NA	NA	inter
CUST_19443_PI429285431	1.3536115	A	0.89226025	A	1.37683077494944	0	lncRNA	21103-1_{1..3000}	lnc-TCL1B-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TCL1B-1:6	chr14	 96158268	 96161267	+	lnc-TCL1B-1	lnc-TCL1B-1:6	ENSG00000259084.1	RP11-1070N10.6	TCL1B	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80chr14:96152754-96158980"	NA	inner
CUST_29746_PI429285431	4.4738297	P	4.6059537	P	0.912487056681882	0	lncRNA	31508-1_{1..913}	n333421|BC012580|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087904|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087904|4.0539700|-0.2384076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333421|BC012580|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087904|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087904|4.0539700|-0.2384076	chr2	102953713	102954625	+	NA	NA	NA	NA	IL1RL1	NA	chr2:102943713-102968497	inner
CUST_5448_PI429285431	0.89985174	A	0.9051062	A	0.996364510318541	0	lncRNA	5382-1_{1..408}	"transcript_id ""ENST00000567369.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567369.1"" | genecode_v17"	chr16	 19365784	 19366191	-	ENSG00000259925.1	ENST00000567369.1	CTA-363E6.2	CTA-363E6.2-001	NA	NA	NA	inter
LNCA_21_P0010472	0.886068	A	0.90058756	A	0.989986282433802	0	lncRNA	TCONS_00029855	NA	NA	NA	NA	XLOC_014297	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014297), lincRNA [TCONS_00029855]"	chr22:19552688-19552629	hs|22q11.21	Agilent_HUMAN_G3V2	TCONS_00029855	TCONS_00029855	chr22	 19552629	 19552688	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012474	0.8855465	A	0.899722	A	0.990222406693969	0	lncRNA	ENST00000449483	NA	NA	NA	NA	XLOC_l2_010489	NA	ENST00000449483	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010489), lincRNA [TCONS_l2_00019666]"	chr3:193296954-193296895	hs|3q29	Agilent_HUMAN_G3V2	ENST00000449483	ENST00000449483	chr3	193296895	193296954	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42121_PI429285431	0.8990618	A	0.8946421	A	1.00306819991352	0	lncRNA	44100-1_{1..100}	ENST00000584845 ncrna:miRNA chromosome:GRCh37:5:89312438:89312537:-1 gene:ENSG00000264342 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584845 ncrna:miRNA chromosome:GRCh37:5:89312438:89312537:-1 gene:ENSG00000264342 gene_biotype:miRNA transcript_biotype:miRNA	chr5	 89312438	 89312537	-	ENSG00000264342	ENST00000584845	NA	NA	NA	NA	NA	inter
CUST_37576_PI429285431	0.89555013	A	0.89251435	A	1.00210645781942	0	lncRNA	38678-1_{1..889}	n346052|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1602|NULL|-1.3060800|-0.2141358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346052|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1602|NULL|-1.3060800|-0.2141358	chr21	 46469338	 46470226	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37158_PI429285431	3.1768253	A	1.1318694	A	4.12660657403158	0	lncRNA	38275-2_{3001..4776}	n345594|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1143|NULL|-1.2491200|-0.2846025	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n345594|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1143|NULL|-1.2491200|-0.2846025	chr3	114036686	114038461	-	NA	NA	NA	NA	ZBTB20	NA	chr3:114056941-114062767	inter
CUST_3520_PI429285431	7.5688906	P	6.6265397	P	1.92165706677462	0	lncRNA	3490-2_{3001..6000}	"transcript_id ""ENST00000439875.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000439875.1"" | genecode_v17"	chr9	115868618	115871617	-	ENSG00000225684.3	ENST00000439875.1	FAM225B	FAM225B-002	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-30.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.62;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90"	NA	inter
CUST_44830_PI429285431	3.683901	P	1.820247	A	3.63928238647266	0	lncRNA	49359-1_{1..980}	"gi|410170502|ref|XR_171090.1| PREDICTED: Homo sapiens uncharacterized LOC101060008 (LOC101060008), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170502|ref|XR_171090.1| PREDICTED: Homo sapiens uncharacterized LOC101060008 (LOC101060008), misc_RNA"	NA	NA	NA	NA	NA	XR_171090.1	NA	NA	NA	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10"	NA	Unknown
CUST_42025_PI429285431	2.9355092	P	3.4591115	P	0.695632720765678	0	lncRNA	43895-1_{1..90}	ENST00000581700 ncrna:miRNA chromosome:GRCh37:17:29902288:29902377:1 gene:ENSG00000265976 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581700 ncrna:miRNA chromosome:GRCh37:17:29902288:29902377:1 gene:ENSG00000265976 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 29902288	 29902377	+	ENSG00000265976	ENST00000581700	NA	NA	NA	NA	NA	inter
CUST_47752_PI429285431	1.3574681	A	1.3360121	A	1.0149833068508	0	lncRNA	51695-1_{1..3000}	"gi|385137080|ref|NR_047618.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 48, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137080|ref|NR_047618.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 48, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047618.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0007145	5.4623284	P	5.7284803	P	0.831534542278045	0	lncRNA	ENST00000413292	NA	NA	NA	NA	PPP2R5B	"protein phosphatase 2, regulatory subunit B', beta"	ENST00000413292	THC2740186	GO:0005515|GO:0010469|GO:0008601|GO:0050730|GO:0000159|GO:0070317|GO:0071158|GO:0051388|GO:0005829|GO:0007165|GO:0031952|GO:0005737|GO:0051091|GO:0031334|GO:0071363|GO:0010976	"BROAD Institute lincRNA (XLOC_009164), lincRNA [TCONS_00019147]"	chr11:64691844-64691903	hs|11q13.1	Agilent_HUMAN_G3V2	ENST00000413292	ENST00000413292	chr11	 64691844	 64691903	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21908_PI429285431	3.0870545	A	3.2417147	A	0.898343936183764	0	lncRNA	23517-1_{1..552}	lnc-C2orf40-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf40-6:1	chr2	107457627	107458178	+	lnc-C2orf40-6	lnc-C2orf40-6:1	ENSG00000227294.1	AC016994.2	ST6GAL2	NA	chr2:107447627-107467663	inner
CUST_4134_PI429285431	3.053175	P	2.5283647	A	1.43874438704415	0	lncRNA	4093-1_{1..220}	"transcript_id ""ENST00000540093.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000540093.1"" | genecode_v17"	chr12	  2851792	  2852011	-	ENSG00000256150.1	ENST00000540093.1	RP11-885B4.1	RP11-885B4.1-001	FKBP4	NA	chr12:2891060-2891074	inter
CUST_44097_PI429285431	11.6806755	P	11.2770605	P	1.32281838328596	0	lncRNA	48763-1_{1..3000}	"gi|254028260|ref|NR_028049.1| Homo sapiens MTERF domain containing 2 (MTERFD2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254028260|ref|NR_028049.1| Homo sapiens MTERF domain containing 2 (MTERFD2), transcript variant 2, non-coding RNA"	Chr2	242026509	242029508	-	130916	NR_028049.1	NA	NA	NA	"hg19_refFlat_SNED1:range=chr2:241938255-2420278165'pad=0,hg19_refFlat_SNED1:range=chr2:241938255-2420278165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70"	NA	inter
CUST_24713_PI429285431	1.679909	A	0.88241726	A	1.73807668965171	0	lncRNA	26259-1_{1..744}	lnc-RERE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RERE-1:1	chr1	  8937567	  8938310	-	lnc-RERE-1	lnc-RERE-1:1	ENSG00000236269.1	ENO1-IT1	ENO1	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20chr1:8927567-8939151"	NA	inner
CUST_49824_PI429285431	0.88956696	A	1.1016481	A	0.863291004028981	0	lncRNA	53582-1_{1..2290}	hg19_lincRNAsTranscripts_TCONS_l2_00025957 range=chr7:64551056-64570511 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025957 range=chr7:64551056-64570511 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 64551056	 64553345	+	NA	NA	NA	NA	NA	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50"	NA	inter
CUST_328_PI429285431	2.5848851	A	0.99982285	A	3.00020742996505	0	lncRNA	320-1_{1..1440}	"transcript_id ""ENST00000411798.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411798.1"" | genecode_v17"	chr1	 95975896	 95977335	+	ENSG00000228971.2	ENST00000411798.1	RP11-286B14.1	RP11-286B14.1-004	NA	NA	NA	inter
CUST_9476_PI429285431	3.5612087	P	4.1204605	P	0.678654031087841	0	lncRNA	10983-1_{1..610}	lnc-SIPA1L2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIPA1L2-1:4	chr1	232878113	232878722	-	lnc-SIPA1L2-1	lnc-SIPA1L2-1:4	XLOC_001259	linc-SIPA1L2	NA	NA	NA	inter
CUST_6431_PI429285431	0.9645904	A	1.1324818	A	0.890142736922811	0	lncRNA	6371-1_{1..1948}	"transcript_id ""ENST00000591143.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000591143.1"" | genecode_v17"	chr19	 29493462	 29495409	+	ENSG00000267014.1	ENST00000591143.1	CTD-2081K17.2	CTD-2081K17.2-001	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10"	NA	inter
CUST_294_PI429201921	0.8932253	A	0.8950103	A	0.998763497382825	0	lncRNA	205-2_{3001..6000}	TC06003923.hg.1	TCONS_l2_00025513-XLOC_l2_013162 // Broad TUCP // linc-RAET1G chr6:-:150319156-150326280 // chr6 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00024982-XLOC_l2_013162 // Broad TUCP // linc-RAET1G chr6:-:150321840-150322530 // chr6 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6:-:150319156-150326280	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00025513-XLOC_l2_013162	linc-RAET1G	chr6	150319156	150326280	-	NA	NA	NA	NA	SCMH1	NA	chr1:41698247-41707815	Unknown
CUST_29192_PI429285431	0.89082694	A	0.8836512	A	1.00498623404486	0	lncRNA	30937-1_{1..708}	n326707|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000003726|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000003726|-0.0572130|-0.2033530	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326707|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000003726|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000003726|-0.0572130|-0.2033530	chr1	  9483737	  9484444	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40"	NA	inter
CUST_19094_PI429285431	2.1271343	A	2.1099126	A	1.01200870519483	0	lncRNA	20783-2_{3001..3857}	lnc-MTAP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MTAP-2:1	NA	     3000	     3856	NA	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_C7orf69:range=chr7:47834934-478591955'pad=0,hg19_refFlat_C7orf69:range=chr7:47834934-478591955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20"	NA	Unknown
CUST_15762_PI429285431	0.87242424	A	0.8738574	A	0.999007102436019	0	lncRNA	17450-1_{1..723}	lnc-TRMT61B-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRMT61B-1:4	chr2	 28958893	 28959615	-	lnc-TRMT61B-1	lnc-TRMT61B-1:4	XLOC_002035	linc-RBKS-1	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50"	NA	inter
LNCA_21_P0006727	0.87519026	A	0.8764292	A	0.999141600867625	0	lncRNA	ENST00000420082	NA	NA	NA	NA	XLOC_008702	NA	ENST00000420082	NA	NA	"BROAD Institute lincRNA (XLOC_008702), lincRNA [TCONS_00017908]"	chr10:4457712-4457653	hs|10p15.1	Agilent_HUMAN_G3V2	ENST00000420082	ENST00000420082	chr10	  4457653	  4457712	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4795_PI429285431	0.89402115	A	1.0681999	A	0.886271883253703	0	lncRNA	4739-1_{1..486}	"transcript_id ""ENST00000557602.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557602.1"" | genecode_v17"	chr14	 46175453	 46175938	-	ENSG00000258616.1	ENST00000557602.1	RP11-369C8.1	RP11-369C8.1-004	NA	NA	NA	inter
CUST_23801_PI429285431	5.2800565	P	5.336981	P	0.961311235000411	0	lncRNA	25366-1_{1..507}	lnc-SEC13-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SEC13-2:1	chr3	 10668451	 10668957	-	lnc-SEC13-2	lnc-SEC13-2:1	ENSG00000224771.1	ATP2B2-IT2	NA	NA	NA	inter
CUST_21022_PI429285431	3.5841556	P	3.335082	A	1.18844373271914	0	lncRNA	22650-1_{1..559}	lnc-HADH-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HADH-1:2	chr4	109094575	109095133	+	lnc-HADH-1	lnc-HADH-1:2	ENSG00000232021.2	LEF1-AS1	LEF1	NA	chr4:109084575-109090112	inter
CUST_8615_PI429285431	2.688943	A	2.5776227	A	1.08021635749246	0	lncRNA	10169-1_{1..3000}	lnc-ANKRD9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD9-1:1	chr14	102955696	102958695	-	lnc-ANKRD9-1	lnc-ANKRD9-1:1	ENSG00000247772	ENST00000324866	TECPR2	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0,hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.54;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-12.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50chr14:102945696-102966035"	NA	inner
CUST_4028_PI429285431	3.3626757	P	3.8411765	P	0.717723070213195	0	lncRNA	3989-1_{1..1571}	"transcript_id ""ENST00000526840.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526840.1"" | genecode_v17"	chr11	 80462243	 80463813	-	ENSG00000255178.1	ENST00000526840.1	RP11-686G23.2	RP11-686G23.2-001	NA	NA	NA	inter
CUST_9384_PI429285431	3.1634655	P	2.0280812	A	2.196770717654	0	lncRNA	10887-1_{1..466}	lnc-TMCC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMCC1-1:1	chr3	129688041	129688506	-	lnc-TMCC1-1	lnc-TMCC1-1:1	XLOC_003248	linc-TMCC1-3	TRH	NA	chr3:129693114-129696778	inter
CUST_45622_PI429285431	4.856077	P	4.675072	P	1.13367334178402	0	lncRNA	50005-2_{3001..4069}	"gi|387762548|ref|NR_048575.1| Homo sapiens glutamate dehydrogenase 1 pseudogene 3 (GLUD1P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387762548|ref|NR_048575.1| Homo sapiens glutamate dehydrogenase 1 pseudogene 3 (GLUD1P3), non-coding RNA"	Chr10	 75494299	 75495367	+	2749	NR_048575.1	NA	NA	NA	NA	NA	inter
CUST_13892_PI429285431	2.325819	A	2.727907	A	0.756762234887313	0	lncRNA	15537-1_{1..295}	lnc-MAP2K6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP2K6-2:1	chr17	 67842455	 67842749	+	lnc-MAP2K6-2	lnc-MAP2K6-2:1	XLOC_012294	linc-KCNJ16-3	NA	NA	NA	inter
CUST_6218_PI429285431	0.9063187	A	0.9092161	A	0.997993690693603	0	lncRNA	6144-1_{1..478}	"transcript_id ""ENST00000589476.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589476.1"" | genecode_v17"	chr18	 56481112	 56481589	+	ENSG00000267593.1	ENST00000589476.1	RP11-108P20.4	RP11-108P20.4-001	NA	NA	NA	inter
CUST_40716_PI429285431	3.973331	P	3.1115599	A	1.81726787977526	0	lncRNA	41453-2_{3001..3690}	n410284|NR_037177_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_5||1.0398400|-0.3462925	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410284|NR_037177_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_5||1.0398400|-0.3462925	chr6	  4201786	  4202475	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20"	NA	inter
CUST_39794_PI429285431	3.8693056	P	3.6210535	P	1.18776720123668	0	lncRNA	40704-1_{1..1078}	n406167|NR_003594|lncRNA|Homosapiens||RefGeneNoncode|NR_003594||5.4541000|-0.0385011	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406167|NR_003594|lncRNA|Homosapiens||RefGeneNoncode|NR_003594||5.4541000|-0.0385011	chr8	 86566827	 86567904	-	NA	NA	NA	NA	REXO1L1	NA	chr8:86556827-86575726	inter
CUST_29805_PI429285431	0.8963646	A	0.9145983	A	0.987440894423842	0	lncRNA	31568-1_{1..461}	n333514|BC038531|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000095243|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000095243|1.0119800|-0.1932550	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333514|BC038531|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000095243|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000095243|1.0119800|-0.1932550	chr19	 12576358	 12576818	-	NA	NA	NA	NA	ZNF709	NA	chr19:12571998-12595632	inner
CUST_15405_PI429285431	0.90731204	A	0.9297823	A	0.984545468742622	0	lncRNA	17090-1_{1..905}	lnc-PPIAL4C-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPIAL4C-6:1	chr1	149186824	149187728	+	lnc-PPIAL4C-6	lnc-PPIAL4C-6:1	XLOC_000392	linc-PPIAL4A-5	NA	NA	NA	inter
LNCA_21_P0008417	0.90604854	A	0.9286933	A	0.984426391051434	0	lncRNA	ENST00000550118	NA	NA	NA	NA	XLOC_010988	NA	ENST00000550118	NA	NA	"BROAD Institute lincRNA (XLOC_010988), lincRNA [TCONS_00022699]"	chr14:30941691-30941632	hs|14q12	Agilent_HUMAN_G3V2	ENST00000550118	ENST00000550118	chr14	 30941632	 30941691	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48980_PI429285431	3.8752604	P	3.3806856	A	1.40890545262108	0	lncRNA	52818-2_{3001..4368}	hg19_lincRNAsTranscripts_TCONS_l2_00019087 range=chr3:195342766-195348763 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019087 range=chr3:195342766-195348763 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	195345766	195347133	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15107_PI429285431	1.9984004	A	2.0115223	A	0.990945830114154	0	lncRNA	16772-1_{1..472}	lnc-HES1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HES1-2:5	chr3	193796190	193796661	+	lnc-HES1-2	lnc-HES1-2:5	XLOC_002975	linc-HES1-1	NA	NA	NA	inter
CUST_42689_PI429285431	8.538385	P	8.594049	P	0.962151511208704	0	lncRNA	45612-1_{1..135}	ENST00000384538 ncrna:snoRNA chromosome:GRCh37:9:119943345:119943479:-1 gene:ENSG00000207268 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384538 ncrna:snoRNA chromosome:GRCh37:9:119943345:119943479:-1 gene:ENSG00000207268 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	119943345	119943479	-	ENSG00000207268	ENST00000384538	NA	NA	ASTN2	NA	chr9:119933345-119953479	inner
CUST_45485_PI429285431	0.9114372	A	0.92727363	A	0.989083050365531	0	lncRNA	49899-1_{1..3000}	"gi|333944054|ref|NR_038284.1| Homo sapiens uncharacterized LOC100507034 (LOC100507034), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|333944054|ref|NR_038284.1| Homo sapiens uncharacterized LOC100507034 (LOC100507034), non-coding RNA"	Chr10	  3183793	  3186792	+	100507034	NR_038284.1	NA	NA	NA	"hg19_refFlat_PITRM1:range=chr10:3180223-32149715'pad=0,hg19_refFlat_PITRM1:range=chr10:3180223-32149715'pad=0 3'pad=0 strand=- repeatMasking=none,-103.10;hg19_refFlat_PITRM1:range=chr10:3180223-32149645'pad=0,hg19_refFlat_PITRM1:range=chr10:3180223-32149645'pad=0 3'pad=0 strand=- repeatMasking=none,-103.10"	NA	inter
CUST_7079_PI429285431	5.50243	P	5.4653044	P	1.02606747015002	0	lncRNA	7017-10_{27001..30000}	"transcript_id ""ENST00000604411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000604411.1"" | genecode_v17"	chrX	 73039040	 73042039	+	ENSG00000270641.1	ENST00000604411.1	TSIX	TSIX-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_25771_PI429285431	0.89873266	A	1.5639904	A	0.630576040836225	0	lncRNA	27296-1_{1..827}	lnc-STAG1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STAG1-1:2	chr3	136580589	136581415	-	lnc-STAG1-1	lnc-STAG1-1:2	ENSG00000239213.1	RP11-85F14.5	NCK1	NA	chr3:136581050-136590891	inter
LNCA_21_P0005968	0.8964828	A	0.9150958	A	0.987181319745793	0	lncRNA	TCONS_00015445	NA	NA	NA	NA	XLOC_007107	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007107), lincRNA [TCONS_00015445]"	chr8:66929945-66929886	hs|8q13.1	Agilent_HUMAN_G3V2	TCONS_00015445	TCONS_00015445	chr8	 66929886	 66929945	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21863_PI429285431	0.9108286	A	0.9252937	A	0.990023653928839	0	lncRNA	23473-1_{1..432}	lnc-CD226-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CD226-2:1	chr18	 67285780	 67286211	-	lnc-CD226-2	lnc-CD226-2:1	ENSG00000265643.1	RP11-465I4.2	DOK6	NA	chr18:67275780-67295930	inner
CUST_23118_PI429285431	0.87951314	A	0.88520736	A	0.996060846362113	0	lncRNA	24689-1_{1..771}	lnc-RPS27A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS27A-1:1	chr2	 55541124	 55541894	+	lnc-RPS27A-1	lnc-RPS27A-1:1	ENSG00000240401.2	AC012358.8	CCDC88A	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CCDC88A:range=chr2:55518847-556462155'pad=0,hg19_refFlat_CCDC88A:range=chr2:55518847-556462155'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30chr2:55531124-55551797"	NA	inner
CUST_30012_PI429285431	0.8999376	A	0.91720414	A	0.988103081159678	0	lncRNA	31780-1_{1..266}	n334445|U11872|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218060|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218060|-0.9300490|-0.2293011	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334445|U11872|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218060|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218060|-0.9300490|-0.2293011	chr2	218989998	218990263	+	NA	NA	NA	NA	CXCR2	NA	chr2:218990013-219001976	inner
CUST_42728_PI429285431	0.895321	A	1.013197	A	0.921543389679964	0	lncRNA	45673-1_{1..132}	ENST00000516880 ncrna:snoRNA chromosome:GRCh37:Y:18250128:18250259:-1 gene:ENSG00000252689 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516880 ncrna:snoRNA chromosome:GRCh37:Y:18250128:18250259:-1 gene:ENSG00000252689 gene_biotype:snoRNA transcript_biotype:snoRNA	chrY	 18250128	 18250259	-	ENSG00000252689	ENST00000516880	NA	NA	NA	NA	NA	inter
CUST_9321_PI429285431	1.5178897	A	2.633564	A	0.461475416351831	0	lncRNA	10829-1_{1..1517}	lnc-NTRK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTRK2-1:1	chr9	 87270352	 87271868	+	lnc-NTRK2-1	lnc-NTRK2-1:1	XLOC_007431	linc-NTRK2-1	NA	NA	NA	inter
CUST_3196_PI429285431	1.1742922	A	0.8886338	A	1.21896643415631	0	lncRNA	3175-1_{1..692}	"transcript_id ""ENST00000522807.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522807.1"" | genecode_v17"	chr8	 79338338	 79339029	-	ENSG00000254266.1	ENST00000522807.1	RP11-594N15.2	RP11-594N15.2-003	PKIA	NA	chr8:79428336-79480728	inner
CUST_48771_PI429285431	1.03034	A	1.8071005	A	0.583675938179697	0	lncRNA	52608-1_{1..252}	hg19_lincRNAsTranscripts_TCONS_l2_00015029 range=chr2:186946073-186981910 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015029 range=chr2:186946073-186981910 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	186946073	186946324	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004172	2.1446035	A	0.888141	A	2.3890921479215	0	lncRNA	ENST00000506769	NA	NA	NA	NA	XLOC_004965	NA	ENST00000506769	NA	NA	"BROAD Institute lincRNA (XLOC_004965), lincRNA [TCONS_00009759]"	chr5:117803917-117803858	hs|5q23.1	Agilent_HUMAN_G3V2	ENST00000506769	ENST00000506769	chr5	117803858	117803917	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46661_PI429285431	10.400891	P	9.651738	P	1.68080574701694	0	lncRNA	50831-1_{1..2019}	"gi|313569870|ref|NR_037619.1| Homo sapiens CKLF-like MARVEL transmembrane domain containing 3 (CMTM3), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|313569870|ref|NR_037619.1| Homo sapiens CKLF-like MARVEL transmembrane domain containing 3 (CMTM3), transcript variant 7, non-coding RNA"	Chr16	 66638634	 66640652	+	123920	NR_037619.1	NA	NA	NA	NA	NA	inter
CUST_46692_PI429285431	5.2309422	P	5.1123514	P	1.08567387664025	0	lncRNA	50853-2_{3001..3874}	"gi|310124423|ref|XR_109337.1| PREDICTED: Homo sapiens uncharacterized LOC100506735 (LOC100506735), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124423|ref|XR_109337.1| PREDICTED: Homo sapiens uncharacterized LOC100506735 (LOC100506735), misc_RNA"	NA	NA	NA	NA	NA	XR_109337.1	NA	NA	NA	NA	NA	Unknown
CUST_8694_PI429285431	3.4109933	P	2.8703814	A	1.45458933131012	0	lncRNA	10241-1_{1..576}	lnc-KIAA1919-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1919-3:5	chr6	111919041	111919616	+	lnc-KIAA1919-3	lnc-KIAA1919-3:5	ENSG00000231889	TRAF3IP2-AS1	TRAF3IP2	NA	chr6:111909041-111927474	inter
CUST_49098_PI429285431	1.6381391	A	1.4026628	A	1.17729535241925	0	lncRNA	52922-1_{1..592}	hg19_lincRNAsTranscripts_TCONS_l2_00020443 range=chr4:22990820-23042640 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020443 range=chr4:22990820-23042640 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 22990820	 22991411	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_52125_PI429285431	3.982471	P	2.6056042	A	2.59703741718586	0	lncRNA	55649-2_{3001..3789}	hg19_lincRNAsTranscripts_TCONS_l2_00018163 range=chr22:20341496-20350456 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018163 range=chr22:20341496-20350456 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 20344496	 20345284	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8456_PI429285431	1.0900276	A	0.9298177	A	1.11744970578383	0	lncRNA	10024-1_{1..1266}	lnc-ACTR2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACTR2-2:2	chr2	 65918916	 65920181	+	lnc-ACTR2-2	lnc-ACTR2-2:2	ENSG00000204929	AC074391.1	NA	"hg19_refFlat_DNAJB12:range=chr10:74095568-741147575'pad=0,hg19_refFlat_DNAJB12:range=chr10:74095568-741147575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90"	NA	inter
CUST_25509_PI429285431	6.2905893	P	6.0159416	P	1.20969864987709	0	lncRNA	27039-1_{1..602}	lnc-KCNMB1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNMB1-3:3	chr5	170184865	170185466	-	lnc-KCNMB1-3	lnc-KCNMB1-3:3	ENSG00000253348.1	MIR4454	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00"	NA	inter
LNCA_21_P0008605	2.8694596	A	2.8075557	A	1.04384239325668	0	lncRNA	TCONS_00023343	NA	NA	NA	NA	XLOC_011204	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011204), lincRNA [TCONS_00023343]"	chr15:33496475-33496534	hs|15q13.3	Agilent_HUMAN_G3V2	TCONS_00023343	TCONS_00023343	chr15	 33496475	 33496534	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_375_PI429285431	0.89535105	A	0.89293456	A	1.0016763867983	0	lncRNA	367-1_{1..515}	"transcript_id ""ENST00000449303.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000449303.2"" | genecode_v17"	chr1	116971671	116972185	-	ENSG00000230381.2	ENST00000449303.2	RP4-655J12.5	RP4-655J12.5-001	NA	NA	NA	inter
CUST_32555_PI429285431	2.9216573	A	3.3665538	P	0.734637018147018	0	lncRNA	34219-1_{1..1844}	n339170|AK096228|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1601|NULL|0.0336432|-0.3158541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339170|AK096228|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1601|NULL|0.0336432|-0.3158541	chr2	232362228	232364071	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.32;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90"	NA	inter
CUST_49495_PI429285431	1.2443227	A	0.94563556	A	1.23002457512421	0	lncRNA	53287-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00024057 range=chr6:16153166-16164118 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024057 range=chr6:16153166-16164118 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 16153166	 16156165	+	NA	NA	NA	NA	GMPR	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00chr6:16161165-16174118"	NA	inter
CUST_29250_PI429285431	9.357911	P	9.373156	P	0.989488606143175	0	lncRNA	31001-1_{1..280}	n332337|FJ626412|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558846|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558846|1.3524800|-0.0620743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332337|FJ626412|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558846|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558846|1.3524800|-0.0620743	chr9	 36840555	 36840834	-	NA	NA	NA	NA	PAX5	NA	chr9:36838531-37012672	inner
CUST_8297_PI429285431	0.8936294	A	0.89533657	A	0.998817379774885	0	lncRNA	9882-1_{1..607}	lnc-BTBD10-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BTBD10-3:6	chr11	 13011003	 13011609	-	lnc-BTBD10-3	lnc-BTBD10-3:6	ENSG00000251381	CTC-497E21.4	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70"	NA	inter
LNCA_21_P0007315	0.87397087	A	0.87389964	A	1.00004937409253	0	lncRNA	TCONS_00019570	NA	NA	NA	NA	XLOC_009370	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009370), lincRNA [TCONS_00019570]"	chr11:9137862-9137803	hs|11p15.4	Agilent_HUMAN_G3V2	TCONS_00019570	TCONS_00019570	chr11	  9137803	  9137862	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006950	0.8741408	A	0.87401295	A	1.0000886227938	0	lncRNA	TCONS_00018409	NA	NA	NA	NA	XLOC_008693	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008693), lincRNA [TCONS_00018409]"	chr10:3347060-3347001	hs|10p15.2	Agilent_HUMAN_G3V2	TCONS_00018409	TCONS_00018409	chr10	  3347001	  3347060	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49601_PI429285431	4.976355	P	5.345255	P	0.774372701418484	0	lncRNA	53391-1_{1..676}	hg19_lincRNAsTranscripts_TCONS_l2_00025016 range=chr6:160905103-160908623 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025016 range=chr6:160905103-160908623 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	160905103	160905778	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30110_PI429285431	0.8754766	A	0.87755615	A	0.998559604147998	0	lncRNA	31883-1_{1..871}	n334659|AF486422|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243595|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243595|5.4518700|-0.1568739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334659|AF486422|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243595|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243595|5.4518700|-0.1568739	chr2	 70901790	 70902660	-	NA	NA	NA	NA	ADD2	NA	chr2:70891790-70943577	inner
CUST_20348_PI429285431	0.9036404	A	0.89579934	A	1.00544980508515	0	lncRNA	21990-1_{1..327}	lnc-TBCD-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBCD-2:3	chr17	 80939335	 80939661	+	lnc-TBCD-2	lnc-TBCD-2:3	ENSG00000262339.1	RP11-1197K16.2	B3GNTL1	NA	chr17:80929335-80949614	inner
CUST_2031_PI429285431	2.356866	A	2.718233	A	0.778426645798682	0	lncRNA	2022-1_{1..559}	"transcript_id ""ENST00000507989.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507989.1"" | genecode_v17"	chr5	   946430	   946988	+	ENSG00000248949.1	ENST00000507989.1	RP11-661C8.2	RP11-661C8.2-001	NA	NA	NA	inter
CUST_48422_PI429285431	10.82703	P	11.407743	P	0.668633247851969	0	lncRNA	52274-1_{1..343}	hg19_lincRNAsTranscripts_TCONS_l2_00000584 range=chr1:149042011-149045703 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000584 range=chr1:149042011-149045703 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	149042011	149042353	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25026_PI429285431	3.2415655	P	3.3054435	P	0.95668905608257	0	lncRNA	26566-1_{1..3000}	lnc-TYR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-TYR-1:1	chr11	 88257170	 88260169	+	lnc-TYR-1	lnc-TYR-1:1	ENSG00000255082.1	GRM5-AS1	GRM5	"hg19_refFlat_GRM5:range=chr11:88241760-887810405'pad=0,hg19_refFlat_GRM5:range=chr11:88241760-887810405'pad=0 3'pad=0 strand=- repeatMasking=none,-110.30chr11:88247170-88267222"	NA	inner
CUST_42110_PI429285431	0.9078895	A	0.8950205	A	1.00896001381475	0	lncRNA	44073-1_{1..71}	ENST00000577559 ncrna:miRNA chromosome:GRCh37:3:197020749:197020819:-1 gene:ENSG00000265850 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577559 ncrna:miRNA chromosome:GRCh37:3:197020749:197020819:-1 gene:ENSG00000265850 gene_biotype:miRNA transcript_biotype:miRNA	chr3	197020749	197020819	-	ENSG00000265850	ENST00000577559	NA	NA	DLG1	NA	chr3:197010749-197025447	inner
CUST_17963_PI429285431	1.8495868	A	2.725311	A	0.544980230015313	0	lncRNA	19696-1_{1..671}	lnc-KATNAL2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-KATNAL2-3:1	chr18	 45120420	 45121090	+	lnc-KATNAL2-3	lnc-KATNAL2-3:1	XLOC_012669	linc-KIAA0427-4	NA	NA	NA	inter
CUST_7599_PI429285431	3.1740432	A	2.131169	A	2.06032824307943	0	lncRNA	9234-1_{1..363}	lnc-KLF14-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF14-1:4	chr7	130567405	130567767	-	lnc-KLF14-1	lnc-KLF14-1:4	ENSG00000226380	AC058791.1	NA	NA	NA	inter
CUST_34289_PI429285431	1.6522422	A	1.2306719	A	1.33938461354202	0	lncRNA	35786-2_{3001..3740}	n341147|AK125355|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3613|NULL|0.4813550|-0.2401980	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341147|AK125355|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3613|NULL|0.4813550|-0.2401980	chr11	126033608	126034347	+	NA	NA	NA	NA	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_TEAD1:range=chr11:12785780-129587695'pad=0,hg19_refFlat_TEAD1:range=chr11:12785780-129587695'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90"	NA	inter
CUST_10711_PI429285431	1.3184453	A	0.9660772	A	1.27665446244254	0	lncRNA	12247-1_{1..601}	lnc-CCDC140-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC140-5:1	chr2	222548155	222548755	+	lnc-CCDC140-5	lnc-CCDC140-5:1	XLOC_001875	linc-CCDC140-4	NA	NA	NA	inter
LNCA_19_P00321721	0.90762436	A	0.9322698	A	0.983062168444156	0	lncRNA	ENST00000436295	NA	NA	NA	NA	XLOC_005495	NA	ENST00000436295	NA	NA	"BROAD Institute lincRNA (XLOC_005495), lincRNA [TCONS_00011392]"	chr6:147183097-147183155	hs|6q24.3	Agilent_HUMAN_G3V2	ENST00000436295	ENST00000436295	chr6	147183097	147183155	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2472_PI429285431	1.0005213	A	0.9185735	A	1.05844609718624	0	lncRNA	2464-1_{1..573}	"transcript_id ""ENST00000568110.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568110.1"" | genecode_v17"	chr6	  4599521	  4600093	-	ENSG00000260673.1	ENST00000568110.1	RP4-529N6.2	RP4-529N6.2-001	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70"	NA	inter
CUST_15181_PI429285431	2.6135461	A	1.6136675	A	1.99983171094526	0	lncRNA	16846-1_{1..273}	lnc-PARN-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PARN-6:3	chr16	 14109719	 14109991	-	lnc-PARN-6	lnc-PARN-6:3	XLOC_011880	linc-CPPED1-3	NA	NA	NA	inter
CUST_4611_PI429285431	0.9003412	A	0.914773	A	0.990046505721645	0	lncRNA	4558-2_{3001..3208}	"transcript_id ""ENST00000423211.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423211.1"" | genecode_v17"	chr13	 44602455	 44602662	+	ENSG00000233725.2	ENST00000423211.1	LINC00284	LINC00284-002	NA	NA	NA	inter
CUST_28516_PI429285431	0.90338796	A	1.3274486	A	0.745323864956677	0	lncRNA	30185-1_{1..438}	n325861|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050849|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050849|-1.1641800|-0.2889101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325861|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050849|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050849|-1.1641800|-0.2889101	chr10	125323732	125324169	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006612	0.9046437	A	0.92682886	A	0.984740050162708	0	lncRNA	ENST00000455199	NA	AK055803	NA	Hs.132844	XLOC_008358	NA	ENST00000455199	THC2626453	NA	"BROAD Institute lincRNA (XLOC_008358), lincRNA [TCONS_00017698]"	chr10:4131146-4131205	hs|10p15.1	Agilent_HUMAN_G3V2	ENST00000455199	ENST00000455199	chr10	  4131146	  4131205	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29958_PI429285431	1.5921681	A	0.91198146	A	1.60234703578841	0	lncRNA	31724-1_{1..459}	n334164|M97722|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196985|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196985|1.5438900|-0.1032169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334164|M97722|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196985|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196985|1.5438900|-0.1032169	chr14	 22538906	 22539364	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007078	0.89866436	A	0.9180918	A	0.986624186717527	0	lncRNA	TCONS_00018817	NA	NA	NA	NA	XLOC_008614	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008614), lincRNA [TCONS_00018817]"	chr10:112779686-112779745	hs|10q25.2	Agilent_HUMAN_G3V2	TCONS_00018817	TCONS_00018817	chr10	112779686	112779745	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45258_PI429285431	5.3414826	P	5.977105	P	0.643663069069876	0	lncRNA	49711-1_{1..1175}	"gi|213512033|ref|NR_024479.1| Homo sapiens HCC-related HCC-C11_v3 (LOC100131726), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|213512033|ref|NR_024479.1| Homo sapiens HCC-related HCC-C11_v3 (LOC100131726), non-coding RNA"	Chr8	124213412	124214586	-	100131726	NR_024479.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0006375	2.8566756	A	2.1233745	A	1.66243864892802	0	lncRNA	BC018787	NA	BC018787	NA	Hs.512469	C9orf169	chromosome 9 open reading frame 169	ENST00000409414	NA	NA	"BROAD Institute lincRNA (XLOC_007620), lincRNA [TCONS_00016732]"	chr9:140119206-140119265	hs|9q34.3	Agilent_HUMAN_G3V2	BC018787	BC018787	chr9	140119206	140119265	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17390_PI429285431	0.88695383	A	0.90137297	A	0.990055193658737	0	lncRNA	19113-1_{1..1351}	lnc-HECA-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-HECA-3:1	chr6	140414128	140415478	+	lnc-HECA-3	lnc-HECA-3:1	XLOC_005485	linc-VTA1-2	NA	NA	NA	inter
CUST_47373_PI429285431	2.4007971	A	1.7101356	A	1.61402340574976	0	lncRNA	51421-1_{1..609}	"gi|197209875|ref|NR_024102.1| Homo sapiens chromosome 21 open reading frame 54 (C21orf54), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|197209875|ref|NR_024102.1| Homo sapiens chromosome 21 open reading frame 54 (C21orf54), non-coding RNA"	Chr21	 34537776	 34538384	-	728409	NR_024102.1	NA	NA	NA	NA	NA	inter
CUST_3128_PI429285431	0.9061639	A	0.9097036	A	0.997549474377116	0	lncRNA	3107-1_{1..551}	"transcript_id ""ENST00000522898.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522898.1"" | genecode_v17"	chr8	 60513937	 60514487	+	ENSG00000253879.1	ENST00000522898.1	RP11-379I19.3	RP11-379I19.3-001	NA	NA	NA	inter
CUST_23791_PI429285431	0.9122713	A	0.9245536	A	0.991522695106278	0	lncRNA	25356-1_{1..428}	lnc-MTERFD2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTERFD2-2:1	chr2	241950114	241950541	-	lnc-MTERFD2-2	lnc-MTERFD2-2:1	ENSG00000229996.1	AC093585.6	SNED1	NA	chr2:241940114-241960161	inner
CUST_20234_PI429285431	0.9046829	A	0.9002335	A	1.00308884976074	0	lncRNA	21877-1_{1..428}	lnc-OR6Y1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR6Y1-1:2	chr1	158464445	158464872	-	lnc-OR6Y1-1	lnc-OR6Y1-1:2	ENSG00000236656.1	RP11-144L1.4	OR6Y1	NA	chr1:158461010-158474507	inter
CUST_17017_PI429285431	0.91003644	A	0.9222088	A	0.9915982565767	0	lncRNA	18728-1_{1..532}	lnc-ACVR2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ACVR2A-1:1	chr2	147659374	147659905	+	lnc-ACVR2A-1	lnc-ACVR2A-1:1	XLOC_001700	linc-ACVR2A-1	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10"	NA	inter
CUST_9295_PI429285431	6.25139	P	6.4692497	P	0.85984010037977	0	lncRNA	10800-1_{1..676}	lnc-VN1R2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VN1R2-1:2	chr19	 53727857	 53728532	+	lnc-VN1R2-1	lnc-VN1R2-1:2	XLOC_013142	linc-VN1R2	NA	"hg19_refFlat_NDUFV2:range=chr18:9102742-91342775'pad=0,hg19_refFlat_NDUFV2:range=chr18:9102742-91342775'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70"	NA	inter
CUST_12265_PI429285431	0.90401363	A	0.8987152	A	1.00367934404475	0	lncRNA	13873-1_{1..1260}	lnc-LMO2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-LMO2-1:2	chr11	 33843540	 33844799	-	lnc-LMO2-1	lnc-LMO2-1:2	XLOC_009411	linc-FBXO3	NA	NA	NA	inter
LNCA_21_P0004326	0.8839479	A	0.8970911	A	0.99093119986329	0	lncRNA	ENST00000522762	NA	NA	NA	NA	XLOC_004626	NA	ENST00000522762	NA	NA	"BROAD Institute lincRNA (XLOC_004626), lincRNA [TCONS_00010163]"	chr5:163969207-163969853	hs|5q34	Agilent_HUMAN_G3V2	ENST00000522762	ENST00000522762	chr5	163969207	163969853	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002959	0.88014793	A	1.3835905	A	0.705421489076233	0	lncRNA	TCONS_00006017	NA	NA	NA	NA	XLOC_002643	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002643), lincRNA [TCONS_00006017]"	chr3:48893663-48893722	hs|3p21.31	Agilent_HUMAN_G3V2	TCONS_00006017	TCONS_00006017	chr3	 48893663	 48893722	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23588_PI429285431	0.88867295	A	0.88797754	A	1.00048213767186	0	lncRNA	25155-1_{1..2023}	lnc-OVGP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-OVGP1-1:1	chr1	111973668	111975690	-	lnc-OVGP1-1	lnc-OVGP1-1:1	ENSG00000260948.1	RP11-552M11.8	WDR77	NA	chr1:111982512-111985690	inter
CUST_37381_PI429285431	0.9090118	A	1.1071041	A	0.87170246842164	0	lncRNA	38484-1_{1..1110}	n345829|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1378|NULL|-1.2728500|-0.2733095	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345829|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1378|NULL|-1.2728500|-0.2733095	chr20	  1340275	  1341384	+	NA	NA	NA	NA	FKBP1A	NA	chr20:1349621-1352621	inter
CUST_12749_PI429285431	7.653551	P	7.745548	P	0.938223147478831	0	lncRNA	14374-1_{1..585}	lnc-ENPP6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ENPP6-1:1	chr4	185198330	185198914	-	lnc-ENPP6-1	lnc-ENPP6-1:1	XLOC_004202	linc-ENPP6-3	NA	NA	NA	inter
CUST_51791_PI429285431	1.4026628	A	1.7049206	A	0.8109822255033	0	lncRNA	55340-1_{1..361}	hg19_lincRNAsTranscripts_TCONS_l2_00012888 range=chr19:15937891-15947556 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012888 range=chr19:15937891-15947556 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 15937891	 15938251	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45644_PI429285431	2.5428963	A	1.9584091	A	1.49950590136352	0	lncRNA	50022-1_{1..3000}	"gi|226060981|ref|NR_027428.1| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|226060981|ref|NR_027428.1| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 1, non-coding RNA"	Chr10	 81805989	 81808988	-	219347	NR_027428.1	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20"	NA	inter
CUST_43589_PI429285431	5.9230623	P	5.770917	P	1.11122063881201	0	lncRNA	48354-1_{1..973}	"gi|410170409|ref|XR_159108.2| PREDICTED: Homo sapiens uncharacterized LOC100996529, transcript variant 1 (LOC100996529), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170409|ref|XR_159108.2| PREDICTED: Homo sapiens uncharacterized LOC100996529, transcript variant 1 (LOC100996529), misc_RNA"	NA	NA	NA	NA	NA	XR_159108.2	NA	NA	NA	NA	NA	Unknown
CUST_20120_PI429285431	4.647926	P	5.142704	P	0.709670872911559	0	lncRNA	21768-1_{1..373}	lnc-RMI1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RMI1-7:1	chr9	 86904855	 86905227	+	lnc-RMI1-7	lnc-RMI1-7:1	ENSG00000233262.1	RP11-380F14.2	SLC28A3	"hg19_refFlat_SLC28A3:range=chr9:86893133-869555485'pad=0,hg19_refFlat_SLC28A3:range=chr9:86893133-869555485'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70chr9:86894855-86915046"	NA	inter
CUST_36981_PI429285431	0.9095592	A	0.893982	A	1.01085579338275	0	lncRNA	38127-1_{1..1581}	n345443|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_992|NULL|-1.5428800|-0.3357158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345443|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_992|NULL|-1.5428800|-0.3357158	chr1	 59222540	 59224120	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10018_PI429285431	0.89671266	A	1.0174967	A	0.919687705800063	0	lncRNA	11543-1_{1..1453}	lnc-AL772363.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL772363.1-1:1	chr9	140771009	140772461	-	lnc-AL772363.1-1	lnc-AL772363.1-1:1	XLOC_007904	linc-C9orf37-1	CACNA1B	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00chr9:140772241-140781749"	NA	inter
CUST_35853_PI429285431	3.7671363	P	3.3217652	P	1.36166432817506	0	lncRNA	37249-2_{3001..3733}	n344520|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_68|NULL|-1.3155100|-0.3532158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n344520|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_68|NULL|-1.3155100|-0.3532158	chr2	208106707	208107439	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_52185_PI429285431	5.4208307	P	5.8398876	P	0.747913380839975	0	lncRNA	55703-1_{1..623}	hg19_lincRNAsTranscripts_TCONS_l2_00017662 range=chr22:25844064-25916711 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017662 range=chr22:25844064-25916711 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 25844064	 25844686	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32580_PI429285431	0.9097515	A	1.4709178	A	0.677754033934667	0	lncRNA	34243-1_{1..1891}	n339198|BC047494|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1630|NULL|1.0850400|-0.2410410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339198|BC047494|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1630|NULL|1.0850400|-0.2410410	chr2	241497575	241499465	+	NA	NA	NA	NA	ANKMY1	NA	chr2:241487575-241497405	inner
LNCA_19_P00326514	4.4802065	P	4.4762087	P	1.00277490674459	0	lncRNA	THC2657073	NA	NA	NA	NA	XLOC_l2_007928	NA	NA	THC2657073	NA	"BROAD Institute lincRNA (XLOC_l2_007928), lincRNA [TCONS_l2_00014464]"	chr2:020786086-020786027	hs|2p24.1	Agilent_HUMAN_G3V2	THC2657073	THC2657073	chr2	 20786027	 20786086	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33317_PI429285431	0.9070246	A	0.91871214	A	0.991931540770534	0	lncRNA	34900-1_{1..2317}	n340034|BC040305|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2489|NULL|-1.1962300|-0.3832502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340034|BC040305|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2489|NULL|-1.1962300|-0.3832502	chr10	 56245989	 56248305	+	NA	NA	NA	NA	PCDH15	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60chr10:56235989-56425816"	NA	inner
CUST_24936_PI429285431	0.8997614	A	0.9037319	A	0.997251642787441	0	lncRNA	26476-1_{1..477}	lnc-ALPK1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALPK1-1:2	chr4	113467941	113468417	+	lnc-ALPK1-1	lnc-ALPK1-1:2	ENSG00000249509.1	RP11-402J6.1	C4orf21	"hg19_refFlat_RPL23A:range=chr17:27047024-270508995'pad=0,hg19_refFlat_RPL23A:range=chr17:27047024-270508995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NEUROG2:range=chr4:113435813-1134366315'pad=0,hg19_refFlat_NEUROG2:range=chr4:113435813-1134366315'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80chr4:113460489-113478037"	NA	inner
LNCA_21_P0005525	0.8748581	A	0.87655514	A	0.998824393076583	0	lncRNA	TCONS_00013939	NA	NA	NA	NA	XLOC_006582	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006582), lincRNA [TCONS_00013939]"	chr7:119866423-119866364	hs|7q31.31	Agilent_HUMAN_G3V2	TCONS_00013939	TCONS_00013939	chr7	119866364	119866423	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22844_PI429285431	7.466282	P	7.501801	P	0.975680702954216	0	lncRNA	24423-1_{1..420}	lnc-ARHGEF2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARHGEF2-2:1	chr1	155976722	155977141	-	lnc-ARHGEF2-2	lnc-ARHGEF2-2:1	ENSG00000241471.1	RP11-336K24.4	SSR2	NA	chr1:155978839-155986861	inter
CUST_11385_PI429285431	2.5128329	A	2.534811	A	0.984881393206041	0	lncRNA	12950-1_{1..235}	lnc-DBX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DBX2-1:1	chr12	 45875094	 45875328	-	lnc-DBX2-1	lnc-DBX2-1:1	XLOC_010059	linc-DBX2-1	NA	NA	NA	inter
CUST_35735_PI429285431	6.719342	P	6.6912036	P	1.01969549929624	0	lncRNA	37152-1_{1..252}	n342903|U00925|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5411|NULL|-1.0066300|-0.1629161	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342903|U00925|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5411|NULL|-1.0066300|-0.1629161	chr12	109172687	109172938	+	NA	NA	NA	NA	SSH1	NA	chr12:109176466-109182942	inter
CUST_25383_PI429285431	4.7371616	P	5.0619392	P	0.798421458275066	0	lncRNA	26914-1_{1..663}	lnc-VIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VIP-1:1	chr6	153309811	153310473	+	lnc-VIP-1	lnc-VIP-1:1	ENSG00000227627.1	RP1-101K10.6	MTRF1L	NA	chr6:153308400-153320358	inner
CUST_8066_PI429285431	5.2107105	P	5.039623	P	1.12590687074364	0	lncRNA	9673-1_{1..1313}	lnc-NBAS-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NBAS-4:3	chr2	 16081654	 16082966	-	lnc-NBAS-4	lnc-NBAS-4:3	ENSG00000233718	MYCNOS	MYCN	"hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.50;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40chr2:16080683-16087129"	NA	inner
CUST_26024_PI429285431	0.91452366	A	0.9140491	A	1.00032899403268	0	lncRNA	27543-1_{1..301}	lnc-CA8-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CA8-7:1	chr8	 61722057	 61722357	-	lnc-CA8-7	lnc-CA8-7:1	ENSG00000254432.1	RP11-33I11.2	CHD7	NA	chr8:61712057-61732165	inner
CUST_224_PI429285431	2.7306376	A	1.7766943	A	1.93716024376012	0	lncRNA	214-1_{1..921}	"transcript_id ""ENST00000444042.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444042.2"" | genecode_v17"	chr1	 47562325	 47563245	-	ENSG00000225506.2	ENST00000444042.2	CYP4A22-AS1	CYP4A22-AS1-001	CYP4Z1	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40chr1:47552325-47583992"	NA	inner
LNCA_21_P0008930	0.9078479	A	0.9310651	A	0.984035862739546	0	lncRNA	TCONS_00024385	NA	NA	NA	NA	XLOC_011712	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011712), lincRNA [TCONS_00024385]"	chr16:49154863-49154922	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00024385	TCONS_00024385	chr16	 49154863	 49154922	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_86_PI429285431	3.9044456	P	3.385244	A	1.43316190423524	0	lncRNA	80-1_{1..3000}	"transcript_id ""ENST00000317726.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000317726.4"" | genecode_v17"	chr19	 10332111	 10335110	-	ENSG00000175898.4	ENST00000317726.4	CTD-2369P2.2	CTD-2369P2.2-002	S1PR2	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_S1PR2:range=chr19:10334520-103355815'pad=0,hg19_refFlat_S1PR2:range=chr19:10334520-103355815'pad=0 3'pad=0 strand=- repeatMasking=none,-106.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80chr19:10332109-10341948"	NA	inner
CUST_241_PI429285431	1.3084831	A	1.0381402	A	1.20609445835994	0	lncRNA	233-1_{1..708}	"transcript_id ""ENST00000422038.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422038.1"" | genecode_v17"	chr1	 57852248	 57852955	+	ENSG00000227935.1	ENST00000422038.1	RP6-102O10.1	RP6-102O10.1-001	DAB1	NA	chr1:57842248-57863122	inner
CUST_23214_PI429285431	3.005113	P	2.5764973	A	1.3459414943883	0	lncRNA	24786-1_{1..529}	lnc-ZNF683-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF683-1:1	chr1	 26793539	 26794067	-	lnc-ZNF683-1	lnc-ZNF683-1:1	ENSG00000225891.1	RP3-476K8.3	DHDDS	NA	chr1:26783539-26797797	inner
CUST_12301_PI429285431	4.6927533	P	4.1505575	P	1.45618716671589	0	lncRNA	13912-1_{1..391}	lnc-GIMAP8-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GIMAP8-1:5	chr7	150132118	150132508	+	lnc-GIMAP8-1	lnc-GIMAP8-1:5	XLOC_006293	linc-GIMAP8-1	NA	NA	NA	inter
CUST_37602_PI429285431	13.568902	P	13.706037	P	0.909323158023743	0	lncRNA	38700-1_{1..248}	n346078|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1628|NULL|-1.3222700|-0.2348488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346078|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1628|NULL|-1.3222700|-0.2348488	chr2	 47918046	 47918293	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012017	0.9012513	A	0.92191863	A	0.985776620247584	0	lncRNA	TCONS_l2_00015425	NA	NA	NA	NA	XLOC_l2_007468	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007468), lincRNA [TCONS_l2_00015425]"	chr2:105283245-105283304	hs|2q12.1	Agilent_HUMAN_G3V2	TCONS_l2_00015425	TCONS_l2_00015425	chr2	105283245	105283304	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16011_PI429285431	3.154921	P	2.5565755	A	1.51397932088528	0	lncRNA	17707-1_{1..1045}	lnc-PHF15-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PHF15-1:2	chr5	133844097	133845141	+	lnc-PHF15-1	lnc-PHF15-1:2	XLOC_004559	linc-PHF15-1	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20"	NA	inter
CUST_26112_PI429285431	0.9109674	A	0.91238606	A	0.999017143141345	0	lncRNA	27623-1_{1..567}	lnc-NELL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NELL2-1:1	chr12	 44657256	 44657822	-	lnc-NELL2-1	lnc-NELL2-1:1	ENSG00000257947.1	RP11-46I1.1	TMEM117	NA	chr12:44647256-44667765	inner
CUST_7298_PI429285431	0.9055712	A	0.9155774	A	0.993088227618774	0	lncRNA	8326-1_{1..321}	"transcript_id ""ENST00000363924.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000363924.1"" | genecode_v17"	chr12	110100668	110100988	-	ENSG00000200794.1	ENST00000363924.1	RN7SKP250	RN7SKP250-201	NA	NA	NA	inter
LNCA_21_P0004750	5.9867086	P	6.492798	P	0.704128479122599	0	lncRNA	BC035191	NA	BC035191	NA	Hs.714205	XLOC_005737	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005737), lincRNA [TCONS_00011496]"	chr6:45539917-45539858	hs|6p21.1	Agilent_HUMAN_G3V2	BC035191	BC035191	chr6	 45539858	 45539917	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37777_PI429285431	12.957066	P	12.970173	P	0.990956064549496	0	lncRNA	38875-1_{1..257}	n346287|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1837|NULL|-1.3035300|-0.2736827	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346287|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1837|NULL|-1.3035300|-0.2736827	chr11	 74456729	 74456985	-	NA	NA	NA	NA	RNF169	NA	chr11:74459913-74467239	inter
CUST_28401_PI429285431	5.431815	P	5.002866	P	1.34625247772902	0	lncRNA	30058-1_{1..1032}	n325721|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045116|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045116|0.2929740|-0.3264377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325721|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045116|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045116|0.2929740|-0.3264377	chr13	 53596459	 53597490	-	NA	NA	NA	NA	OLFM4	"hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_OLFM4:range=chr13:53602972-536249065'pad=0,hg19_refFlat_OLFM4:range=chr13:53602972-536249065'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr13:53602876-53614749"	NA	inner
LNCA_21_P0010380	2.468804	A	2.8732162	A	0.755544062842161	0	lncRNA	ENST00000450365	NA	NA	NA	NA	XLOC_014354	NA	ENST00000450365	NA	NA	"BROAD Institute lincRNA (XLOC_014354), lincRNA [TCONS_00029475]"	chr22:34604193-34604134	hs|22q12.3	Agilent_HUMAN_G3V2	ENST00000450365	ENST00000450365	chr22	 34604134	 34604193	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3300132	0.8911677	A	0.9080533	A	0.988364021743955	0	lncRNA	XR_108867	XR_108867	XR_108867	100132183	Hs.667131	FP6628	uncharacterized LOC100132183	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100132183 (FP6628), miscRNA [XR_108867]"	chr8:94727532-94727473	hs|8q22.1	Agilent_HUMAN_G3V2	XR_108867	XR_108867	chr8	 94727473	 94727532	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25707_PI429285431	0.88529754	A	0.8991849	A	0.990420197059144	0	lncRNA	27235-1_{1..521}	lnc-COMMD10-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COMMD10-2:3	chr5	115843741	115844261	+	lnc-COMMD10-2	lnc-COMMD10-2:3	ENSG00000248445.1	CTB-118N6.3	SEMA6A	NA	chr5:115833741-115853972	inner
LNCA_21_P0003185	2.1955872	A	3.973131	P	0.291679560951919	0	lncRNA	TCONS_00006684	NA	NA	NA	NA	XLOC_003286	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003286), lincRNA [TCONS_00006684]"	chr3:151299370-151257035	hs|3q25.1	Agilent_HUMAN_G3V2	TCONS_00006684	TCONS_00006684	chr3	151257035	151299370	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003734	0.8783881	A	0.8874064	A	0.993768487693402	0	lncRNA	TCONS_00008454	NA	NA	NA	NA	XLOC_003917	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003917), lincRNA [TCONS_00008454]"	chr4:28345452-28345393	hs|4p15.1	Agilent_HUMAN_G3V2	TCONS_00008454	TCONS_00008454	chr4	 28345393	 28345452	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43034_PI429285431	3.2948709	P	3.0447888	A	1.18927479159373	0	lncRNA	46569-1_{1..149}	ENST00000579987 ncrna:snRNA chromosome:GRCh37:HSCHR6_MHC_MANN:32688633:32688781:-1 gene:ENSG00000263871 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579987 ncrna:snRNA chromosome:GRCh37:HSCHR6_MHC_MANN:32688633:32688781:-1 gene:ENSG00000263871 gene_biotype:snRNA transcript_biotype:snRNA	chrHSCHR6_MHC_MANN	 32688633	 32688781	-	ENSG00000263871	ENST00000579987	NA	NA	NA	NA	NA	Unknown
CUST_42697_PI429285431	2.0319746	A	0.87826806	A	2.22484763671941	0	lncRNA	45622-1_{1..88}	ENST00000516213 ncrna:snoRNA chromosome:GRCh37:16:76503405:76503492:-1 gene:ENSG00000252022 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516213 ncrna:snoRNA chromosome:GRCh37:16:76503405:76503492:-1 gene:ENSG00000252022 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 76503405	 76503492	-	ENSG00000252022	ENST00000516213	NA	NA	CNTNAP4	NA	chr16:76493405-76513492	inner
CUST_20357_PI429285431	2.3993852	A	2.6300812	A	0.852223653948745	0	lncRNA	21998-1_{1..592}	lnc-GTPBP8-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTPBP8-2:2	chr3	112521913	112522504	+	lnc-GTPBP8-2	lnc-GTPBP8-2:2	ENSG00000242770.2	RP11-180K7.1	NA	NA	NA	inter
LNCA_21_P0006539	0.87550706	A	0.8815401	A	0.995826946819987	0	lncRNA	TCONS_00017345	NA	NA	NA	NA	XLOC_008188	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008188), lincRNA [TCONS_00017345]"	chrX:073635294-073635238	hs|Xq13.2	Agilent_HUMAN_G3V2	TCONS_00017345	TCONS_00017345	chrX	 73635238	 73635294	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36290_PI429285431	0.89420325	A	1.0099909	A	0.922878320936266	0	lncRNA	37522-1_{1..3000}	n344817|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_366|NULL|-1.3159400|-0.2797017	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344817|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_366|NULL|-1.3159400|-0.2797017	chr1	 59261826	 59264825	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004432	0.8778462	A	1.3350126	A	0.728415536880844	0	lncRNA	TCONS_00010444	NA	NA	NA	NA	XLOC_004964	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004964), lincRNA [TCONS_00010444]"	chr5:116256870-116256811	hs|5q23.1	Agilent_HUMAN_G3V2	TCONS_00010444	TCONS_00010444	chr5	116256811	116256870	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36447_PI429285431	8.279586	P	8.427391	P	0.902622721044562	0	lncRNA	37660-2_{3001..3352}	n344960|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_509|NULL|-1.3734900|-0.3539059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344960|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_509|NULL|-1.3734900|-0.3539059	chr7	 79087201	 79087552	+	NA	NA	NA	NA	MAGI2	NA	chr7:79074201-79082890	inter
CUST_46610_PI429285431	5.4438586	P	5.4351063	P	1.00608507135	0	lncRNA	50789-1_{1..3000}	"gi|384475542|ref|NR_047581.1| Homo sapiens polymerase (RNA) III (DNA directed) polypeptide E (80kD) (POLR3E), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384475542|ref|NR_047581.1| Homo sapiens polymerase (RNA) III (DNA directed) polypeptide E (80kD) (POLR3E), transcript variant 6, non-coding RNA"	Chr16	 22308696	 22311695	+	55718	NR_047581.1	NA	NA	NA	NA	NA	inter
CUST_26782_PI429285431	0.878886	A	0.87536705	A	1.00244212741813	0	lncRNA	28282-1_{1..264}	n323835|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057259|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057259|-0.6793120|-0.3391461	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323835|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057259|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057259|-0.6793120|-0.3391461	chrX	 73418264	 73418527	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23861_PI429285431	1.5110719	A	2.9572947	A	0.366980980587951	0	lncRNA	25423-1_{1..452}	lnc-PER2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PER2-2:1	chr2	239336335	239336786	-	lnc-PER2-2	lnc-PER2-2:1	ENSG00000229915.1	AC016999.2	ASB1	"hg19_refFlat_ASB1:range=chr2:239335712-2393551525'pad=0,hg19_refFlat_ASB1:range=chr2:239335712-2393551525'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.00chr2:239335626-239346370"	NA	inner
LNCA_21_P0004425	0.8731802	A	0.8748094	A	0.998871362004928	0	lncRNA	TCONS_00010406	NA	NA	NA	NA	XLOC_004926	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004926), lincRNA [TCONS_00010406]"	chr5:92007283-92007224	hs|5q14.3	Agilent_HUMAN_G3V2	TCONS_00010406	TCONS_00010406	chr5	 92007224	 92007283	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013141	0.8731621	A	0.87444556	A	0.999110768920133	0	lncRNA	ENST00000448991	NA	NA	NA	NA	XLOC_l2_013015	NA	ENST00000448991	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013015), lincRNA [TCONS_l2_00025400]"	chr6:52804587-52804528	hs|6p12.2	Agilent_HUMAN_G3V2	ENST00000448991	ENST00000448991	chr6	 52804528	 52804587	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14081_PI429285431	1.7249517	A	0.9202081	A	1.74683531154228	0	lncRNA	15726-1_{1..1091}	lnc-HERPUD2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HERPUD2-1:2	chr7	 35655088	 35656178	-	lnc-HERPUD2-1	lnc-HERPUD2-1:2	XLOC_006409	linc-TBX20-4	NA	NA	NA	inter
CUST_46994_PI429285431	2.0734746	A	2.174908	A	0.932106430291518	0	lncRNA	51093-1_{1..1092}	"gi|380692330|ref|NR_046457.1| Homo sapiens uncharacterized LOC284260 (LOC284260), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">gi|380692330|ref|NR_046457.1| Homo sapiens uncharacterized LOC284260 (LOC284260), transcript variant 5, non-coding RNA"	Chr18	 39766633	 39767724	+	284260	NR_046457.1	NA	NA	NA	NA	NA	inter
CUST_32444_PI429285431	1.0828947	A	0.8754721	A	1.15462358494301	0	lncRNA	34116-1_{1..2205}	n339042|AK056075|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1471|NULL|-1.2477600|-0.3604798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339042|AK056075|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1471|NULL|-1.2477600|-0.3604798	chr2	179967006	179969210	-	NA	NA	NA	NA	SESTD1	NA	chr2:179957006-179979211	inner
CUST_24268_PI429285431	1.3014468	A	0.9185762	A	1.30393377596156	0	lncRNA	25819-1_{1..2917}	lnc-TMEM144-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM144-1:1	chr4	159122564	159125480	+	lnc-TMEM144-1	lnc-TMEM144-1:1	ENSG00000248429.1	RP11-597D13.9	TMEM144	"hg19_refFlat_FAM198B:range=chr4:159048559-1590925275'pad=0,hg19_refFlat_FAM198B:range=chr4:159048559-1590925275'pad=0 3'pad=0 strand=- repeatMasking=none,-103.80chr4:159131401-159134029"	NA	inter
CUST_44856_PI429285431	0.88733935	A	0.87972796	A	1.00528975512978	0	lncRNA	49382-1_{1..2989}	"gi|310119879|ref|XR_110200.1| PREDICTED: Homo sapiens uncharacterized LOC441179 (LOC441179), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119879|ref|XR_110200.1| PREDICTED: Homo sapiens uncharacterized LOC441179 (LOC441179), misc_RNA"	Chr6	168196209	168199197	+	441179	XR_110200.2	NA	NA	NA	"hg19_refFlat_ZNF649:range=chr19:52393871-524033605'pad=0,hg19_refFlat_ZNF649:range=chr19:52393871-524033605'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80"	NA	inter
LNCA_21_P0005362	0.8750772	A	0.875356	A	0.999806769237529	0	lncRNA	TCONS_00013381	NA	NA	NA	NA	XLOC_006016	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006016), lincRNA [TCONS_00013381]"	chr7:25888359-25888418	hs|7p15.2	Agilent_HUMAN_G3V2	TCONS_00013381	TCONS_00013381	chr7	 25888359	 25888418	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43145_PI429285431	0.89464426	A	0.8847334	A	1.00689333507556	0	lncRNA	47959-1_{1..649}	ENST00000602605 havana:sense_intronic chromosome:GRCh37:1:71471537:71472185:-1 gene:ENSG00000269933 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602605 havana:sense_intronic chromosome:GRCh37:1:71471537:71472185:-1 gene:ENSG00000269933 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr1	 71471537	 71472185	-	ENSG00000269933	ENST00000602605	NA	NA	PTGER3	NA	chr1:71461537-71482185	inner
CUST_34859_PI429285431	3.653587	P	3.4928513	P	1.11785704213758	0	lncRNA	36285-1_{1..273}	n341765|U88892|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4240|NULL|-0.0675267|-0.1165415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341765|U88892|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4240|NULL|-0.0675267|-0.1165415	chr9	117817755	117818027	-	NA	NA	NA	NA	TNC	NA	chr9:117807755-117828028	inner
LNCA_21_P0001572	0.87521046	A	0.87617624	A	0.99933079633268	0	lncRNA	TCONS_00001636	NA	NA	NA	NA	XLOC_000973	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000973), lincRNA [TCONS_00001636]"	chr1:116783634-116783575	hs|1p13.1	Agilent_HUMAN_G3V2	TCONS_00001636	TCONS_00001636	chr1	116783575	116783634	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49773_PI429285431	1.5138023	A	1.6605008	A	0.903315268752539	0	lncRNA	53533-3_{6001..6856}	hg19_lincRNAsTranscripts_TCONS_l2_00025878 range=chr7:55808105-55816936 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025878 range=chr7:55808105-55816936 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 55814105	 55814960	+	NA	NA	NA	NA	LOC100128326	NA	chr7:55810070-55815779	inter
LNCA_21_P0008975	5.15579	P	4.73305	P	1.34047099245155	0	lncRNA	TCONS_00024477	NA	NA	NA	NA	XLOC_011797	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011797), lincRNA [TCONS_00024477]"	chr16:79710032-79710091	hs|16q23.2	Agilent_HUMAN_G3V2	TCONS_00024477	TCONS_00024477	chr16	 79710032	 79710091	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24354_PI429285431	0.8981401	A	0.9082721	A	0.993001636170954	0	lncRNA	25906-1_{1..493}	lnc-MYCBP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYCBP2-1:2	chr13	 78180612	 78181104	-	lnc-MYCBP2-1	lnc-MYCBP2-1:2	ENSG00000224347.1	SCEL-AS1	SCEL	"hg19_refFlat_SCEL:range=chr13:78130011-782184095'pad=0,hg19_refFlat_SCEL:range=chr13:78130011-782184095'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10chr13:78170612-78190651"	NA	inner
CUST_34596_PI429285431	0.8914258	A	0.88374734	A	1.00533649151499	0	lncRNA	36054-1_{1..3000}	n341480|AK001117|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3950|NULL|-1.2130900|-0.3732599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341480|AK001117|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3950|NULL|-1.2130900|-0.3732599	chr8	 31835222	 31838221	+	NA	NA	NA	NA	NRG1	NA	chr8:31825222-31849342	inner
CUST_8971_PI429285431	0.8741696	A	0.8815326	A	0.994909358766226	0	lncRNA	10503-1_{1..648}	lnc-C20orf62-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C20orf62-3:1	chr20	 43024093	 43024740	-	lnc-C20orf62-3	lnc-C20orf62-3:1	ENSG00000229005	RP5-881L22.4	HNF4A	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-58.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20chr20:43014093-43034346"	NA	inner
CUST_48827_PI429285431	4.4977813	P	2.8864927	A	3.05524611318189	0	lncRNA	52665-1_{1..768}	hg19_lincRNAsTranscripts_TCONS_l2_00014355 range=chr2:243030942-243102157 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014355 range=chr2:243030942-243102157 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	243030942	243031709	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38548_PI429285431	0.92104733	A	0.9015433	A	1.01361096050048	0	lncRNA	39555-1_{1..1951}	n383302|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ksd.1||-0.7303020|-0.2158580	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383302|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ksd.1||-0.7303020|-0.2158580	chr18	 13457207	 13459157	+	NA	NA	NA	NA	C18orf1	NA	chr18:13447207-13469158	inner
CUST_4129_PI429285431	2.7740347	A	2.37138	A	1.32193816967461	0	lncRNA	4088-1_{1..605}	"transcript_id ""ENST00000440796.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440796.2"" | genecode_v17"	chr12	   147073	   147677	-	ENSG00000206114.5	ENST00000440796.2	FAM138D	FAM138D-002	NA	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40"	NA	inter
CUST_48277_PI429285431	8.191423	P	8.020648	P	1.12566301616351	0	lncRNA	52138-1_{1..2308}	hg19_lincRNAsTranscripts_TCONS_l2_00001046 range=chr1:16944759-16971194 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001046 range=chr1:16944759-16971194 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 16944759	 16947066	-	NA	NA	NA	NA	NBPF1	NA	chr1:16934759-16939982	inter
CUST_24295_PI429285431	5.6475883	P	5.0544305	P	1.5085450702487	0	lncRNA	25846-1_{1..429}	lnc-ZNF207-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF207-2:2	chr17	 30687617	 30688045	+	lnc-ZNF207-2	lnc-ZNF207-2:2	ENSG00000265794.1	RP11-227G15.3	ZNF207	NA	chr17:30677617-30697468	inner
CUST_33554_PI429285431	0.91169393	A	0.91189915	A	0.999857762452325	0	lncRNA	35122-1_{1..2124}	n340303|AK096096|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2764|NULL|0.8230360|-0.1202338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340303|AK096096|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2764|NULL|0.8230360|-0.1202338	chr5	  1185649	  1187772	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_878_PI429285431	0.9220147	A	0.9194682	A	1.00176665800001	0	lncRNA	868-1_{1..639}	"transcript_id ""ENST00000443926.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443926.1"" | genecode_v17"	chr2	 52721826	 52722464	-	ENSG00000236837.1	ENST00000443926.1	AC139712.4	AC139712.4-001	NA	NA	NA	inter
LNCA_21_P0013894	8.943873	P	9.216272	P	0.827941649385022	0	lncRNA	TCONS_l2_00030929	NA	NA	NA	NA	XLOC_l2_015938	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015938), lincRNA [TCONS_l2_00030929]"	chrY:10036168-10035807	hs|Yp11.2	Agilent_HUMAN_G3V2	TCONS_l2_00030929	TCONS_l2_00030929	chrY	 10035807	 10036168	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32739_PI429285431	7.610848	P	7.5752673	P	1.02496930098913	0	lncRNA	34379-1_{1..3000}	n339367|D87462|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1799|NULL|9.9077300|-0.1988318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339367|D87462|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1799|NULL|9.9077300|-0.1988318	chr3	 52435028	 52438027	-	NA	NA	NA	NA	DNAH1	NA	chr3:52425028-52434513	inner
CUST_47501_PI429285431	1.2962168	A	1.8116323	A	0.699591419595597	0	lncRNA	51515-1_{1..2134}	"gi|223941897|ref|NR_026920.1| Homo sapiens MORC2 antisense RNA 1 (MORC2-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223941897|ref|NR_026920.1| Homo sapiens MORC2 antisense RNA 1 (MORC2-AS1), non-coding RNA"	Chr22	 31318295	 31320428	+	150291	NR_026920.1	NA	NA	NA	NA	NA	inter
CUST_31124_PI429285431	0.8877295	A	0.8992714	A	0.992031681269816	0	lncRNA	32919-1_{1..265}	n337430|DQ884943|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393978|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393978|-1.3986200|-0.2227005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337430|DQ884943|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393978|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393978|-1.3986200|-0.2227005	chr9	 16583058	 16583322	-	NA	NA	NA	NA	BNC2	NA	chr9:16573058-16724976	inner
CUST_39413_PI429285431	3.508035	P	2.0584235	A	2.73134489693738	0	lncRNA	40373-1_{1..709}	n386679|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010rib.1||2.0523800|-0.1533792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386679|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010rib.1||2.0523800|-0.1533792	chr11	 50375273	 50375981	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014536	0.8961825	A	0.9147309	A	0.987225524057333	0	lncRNA	XR_110232	XR_110232	XR_110232	NA	NA	LOC100506777	uncharacterized LOC100506777	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506777 (LOC100506777), miscRNA [XR_110232]"	chr14:89831292-89831351	hs|14q32.11	Agilent_HUMAN_G3V2	XR_110232	XR_110232	chr14	 89831292	 89831351	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006001	0.8928598	A	1.6020952	A	0.611644212366268	0	lncRNA	ENST00000423440	NA	NA	NA	NA	XLOC_007301	NA	ENST00000423440	NA	NA	"BROAD Institute lincRNA (XLOC_007301), lincRNA [TCONS_00015656]"	chr9:23849853-23849912	hs|9p21.3	Agilent_HUMAN_G3V2	ENST00000423440	ENST00000423440	chr9	 23849853	 23849912	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26580_PI429285431	4.713085	P	5.1903725	P	0.718326925951335	0	lncRNA	28084-1_{1..582}	lnc-LENG9-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LENG9-1:3	chr19	 54959343	 54959924	-	lnc-LENG9-1	lnc-LENG9-1:3	ENSG00000226696.1	LENG8-AS1	LENG8	NA	chr19:54960065-54969780	inter
CUST_809_PI429285431	0.8987868	A	0.9137977	A	0.989649179286293	0	lncRNA	802-1_{1..440}	"transcript_id ""ENST00000433429.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433429.1"" | genecode_v17"	chr2	 22759351	 22759790	+	ENSG00000233587.1	ENST00000433429.1	AC096570.1	AC096570.1-001	NA	NA	NA	inter
LNCA_21_P0009237	1.0134445	A	0.90155315	A	1.08064401519722	0	lncRNA	THC2700004	NA	NA	NA	NA	XLOC_012173	NA	NA	THC2700004	NA	"BROAD Institute lincRNA (XLOC_012173), lincRNA [TCONS_00025352]"	chr17:032491113-032491172	hs|17q12	Agilent_HUMAN_G3V2	THC2700004	THC2700004	chr17	 32491113	 32491172	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14307_PI429285431	4.2821918	P	3.7184935	P	1.47805330474362	0	lncRNA	15966-2_{3001..3567}	lnc-HS3ST3A1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HS3ST3A1-4:4	chr17	 13685836	 13686402	-	lnc-HS3ST3A1-4	lnc-HS3ST3A1-4:4	XLOC_012393	linc-HS3ST3A1-1	NA	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80"	NA	inter
CUST_32005_PI429285431	0.89434594	A	1.1635035	A	0.82980395586765	0	lncRNA	33727-1_{1..1228}	n338569|CR591832|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|975|NULL|-0.8012460|-0.2561354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338569|CR591832|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|975|NULL|-0.8012460|-0.2561354	chr1	234794725	234795952	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23061_PI429285431	2.1684008	A	0.91434467	A	2.38511053880449	0	lncRNA	24632-1_{1..837}	lnc-WDR26-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR26-2:1	chr1	224918000	224918836	-	lnc-WDR26-2	lnc-WDR26-2:1	ENSG00000229400.1	RP11-3L21.2	CNIH3	"hg19_refFlat_CNIH3:range=chr1:224804877-2249270585'pad=0,hg19_refFlat_CNIH3:range=chr1:224804877-2249270585'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40chr1:224908000-224928249"	NA	inner
CUST_16803_PI429285431	6.012192	P	5.9941816	P	1.0125621066117	0	lncRNA	18510-2_{3001..3080}	lnc-ARFGEF2-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARFGEF2-3:7	chr20	 46999823	 46999902	+	lnc-ARFGEF2-3	lnc-ARFGEF2-3:7	XLOC_013551	linc-ARFGEF2-4	NA	NA	NA	inter
LNCA_21_P0011795	0.88057494	A	1.3374083	A	0.728583707912343	0	lncRNA	TCONS_l2_00013556	NA	NA	NA	NA	XLOC_l2_007270	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007270), lincRNA [TCONS_l2_00013556]"	chr2:33881039-33881098	hs|2p22.3	Agilent_HUMAN_G3V2	TCONS_l2_00013556	TCONS_l2_00013556	chr2	 33881039	 33881098	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014822	5.0899973	P	5.2510743	P	0.894357166580319	0	lncRNA	XR_132665	XR_132665	XR_132665	NA	Hs.659599	LOC100652912	uncharacterized LOC100652912	NA	THC2499177	NA	"PREDICTED: Homo sapiens hypothetical LOC100652912 (LOC100652912), miscRNA [XR_132665]"	chr19:1990310-1990369	hs|19p13.3	Agilent_HUMAN_G3V2	XR_132665	XR_132665	chr19	  1990310	  1990369	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19206_PI429285431	4.1418533	A	2.8054814	A	2.52515491839369	0	lncRNA	20876-1_{1..789}	lnc-MAGEA12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAGEA12-2:1	chrX	151882978	151883766	-	lnc-MAGEA12-2	lnc-MAGEA12-2:1	ENSG00000197463.8	CSAG3	MAGEA2B	NA	chrX:151885384-151887080	inter
LNCA_21_P0006063	0.87537235	A	0.88124555	A	0.995937283233845	0	lncRNA	AK124167	NA	AK124167	NA	Hs.632696	XLOC_007612	NA	NA	THC2623253	NA	"BROAD Institute lincRNA (XLOC_007612), lincRNA [TCONS_00015778]"	chr9:139159024-139159083	hs|9q34.3	Agilent_HUMAN_G3V2	AK124167	AK124167	chr9	139159024	139159083	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013262	1.5924082	A	0.879213	A	1.63943101910559	0	lncRNA	TCONS_l2_00026155	NA	NA	NA	NA	XLOC_l2_013554	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013554), lincRNA [TCONS_l2_00026155]"	chr7:108254664-108254723	hs|7q31.1	Agilent_HUMAN_G3V2	TCONS_l2_00026155	TCONS_l2_00026155	chr7	108254664	108254723	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13319_PI429285431	13.013676	P	12.904147	P	1.07887595586411	0	lncRNA	14954-1_{1..769}	lnc-C1orf222-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf222-2:1	chr1	  1981037	  1981805	-	lnc-C1orf222-2	lnc-C1orf222-2:1	XLOC_000676	linc-KIAA1751-2	PRKCZ	NA	chr1:1981909-1991566	inter
CUST_39584_PI429285431	6.497428	P	6.5276704	P	0.97925575031275	0	lncRNA	40527-1_{1..1718}	n387576|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011imn.1||0.2884450|-0.1751529	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387576|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011imn.1||0.2884450|-0.1751529	chr6	  2461379	  2463096	+	NA	NA	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00"	NA	inter
CUST_26603_PI429285431	0.89488137	A	0.88588035	A	1.0062585349325	0	lncRNA	28106-1_{1..795}	lnc-BMP2K-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-BMP2K-1:9	chr4	 80148366	 80149160	+	lnc-BMP2K-1	lnc-BMP2K-1:9	ENSG00000249307.1	RP11-438E5.1	NA	NA	NA	inter
CUST_8969_PI429285431	3.5389128	P	3.3662639	A	1.12712607688261	0	lncRNA	10502-1_{1..3000}	lnc-HBXIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HBXIP-1:1	chr1	110912172	110915171	-	lnc-HBXIP-1	lnc-HBXIP-1:1	ENSG00000248310	ENST00000509240	SLC16A4	NA	chr1:110905473-110925625	inner
CUST_3164_PI429285431	9.787686	P	9.663185	P	1.09013061259047	0	lncRNA	3143-1_{1..259}	"transcript_id ""ENST00000517725.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517725.1"" | genecode_v17"	chr8	 67104350	 67104608	+	ENSG00000253138.1	ENST00000517725.1	RP11-366K18.3	RP11-366K18.3-003	NA	NA	NA	inter
CUST_16028_PI429285431	7.4415445	P	6.648177	P	1.7331151357478	0	lncRNA	17725-1_{1..206}	lnc-SGCG-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SGCG-5:3	chr13	 23507259	 23507464	+	lnc-SGCG-5	lnc-SGCG-5:3	XLOC_010305	linc-SGCG-4	NA	NA	NA	inter
CUST_14508_PI429285431	1.4707063	A	0.8974424	A	1.48788590392578	0	lncRNA	16173-1_{1..1052}	lnc-DRD5-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DRD5-6:3	chr4	 10750796	 10751847	+	lnc-DRD5-6	lnc-DRD5-6:3	XLOC_003453	linc-CPEB2-13	NA	NA	NA	inter
CUST_1363_PI429285431	0.874751	A	0.87816215	A	0.997638364055528	0	lncRNA	1351-1_{1..1957}	"transcript_id ""ENST00000468072.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000468072.1"" | genecode_v17"	chr3	 62936146	 62938102	+	ENSG00000244342.1	ENST00000468072.1	LINC00698	LINC00698-001	NA	NA	NA	inter
CUST_43776_PI429285431	0.8942933	A	0.8929653	A	1.00092092324543	0	lncRNA	48508-1_{1..683}	"gi|310118865|ref|XR_109991.1| PREDICTED: Homo sapiens uncharacterized LOC727944, transcript variant 1 (LOC727944), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310118865|ref|XR_109991.1| PREDICTED: Homo sapiens uncharacterized LOC727944, transcript variant 1 (LOC727944), misc_RNA"	Chr2	   490771	   491453	-	727944	XR_109991.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0001405	0.8737056	A	1.7921622	A	0.529074723547246	0	lncRNA	TCONS_00001243	NA	NA	NA	NA	XLOC_000523	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000523), lincRNA [TCONS_00001243]"	chr1:201553177-201553236	hs|1q32.1	Agilent_HUMAN_G3V2	TCONS_00001243	TCONS_00001243	chr1	201553177	201553236	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18905_PI429285431	0.88287216	A	0.87656146	A	1.004383824882	0	lncRNA	20596-1_{1..726}	lnc-MFSD8-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MFSD8-6:1	chr4	127876447	127877172	-	lnc-MFSD8-6	lnc-MFSD8-6:1	ENSG00000249178	RP11-123G5.1	NA	"hg19_refFlat_RBM48:range=chr7:92158128-921662515'pad=0,hg19_refFlat_RBM48:range=chr7:92158128-921662515'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30"	NA	inter
LNCA_21_P0004024	1.075103	A	0.87461036	A	1.14909067033131	0	lncRNA	TCONS_00009444	NA	NA	NA	NA	XLOC_004456	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004456), lincRNA [TCONS_00009444]"	chr5:87566880-87566939	hs|5q14.3	Agilent_HUMAN_G3V2	TCONS_00009444	TCONS_00009444	chr5	 87566880	 87566939	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22847_PI429285431	4.1258316	P	4.642526	P	0.698971530433657	0	lncRNA	24426-1_{1..764}	lnc-GTPBP8-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GTPBP8-1:4	chr3	112828949	112829712	+	lnc-GTPBP8-1	lnc-GTPBP8-1:4	ENSG00000240057.1	RP11-572M11.4	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C3orf17:range=chr3:112724383-1127384945'pad=0,hg19_refFlat_C3orf17:range=chr3:112724383-1127384945'pad=0 3'pad=0 strand=- repeatMasking=none,-100.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
LNCA_21_P0003311	7.479114	P	7.750352	P	0.828608198522267	0	lncRNA	TCONS_00007330	NA	NA	NA	NA	XLOC_003386	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003386), lincRNA [TCONS_00007330]"	chr3:194489170-194482986	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00007330	TCONS_00007330	chr3	194482986	194489170	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34303_PI429285431	0.8888234	A	0.892232	A	0.997640127408145	0	lncRNA	35799-1_{1..3000}	n341163|BX649132|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3629|NULL|-0.6899850|-0.3148593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341163|BX649132|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3629|NULL|-0.6899850|-0.3148593	chr11	133167083	133170082	-	NA	NA	NA	NA	OPCML	NA	chr11:133157083-133182529	inner
LNCA_21_P0011033	6.7042975	P	6.838763	P	0.911007287586945	0	lncRNA	TCONS_l2_00005433	NA	NA	NA	NA	XLOC_l2_002855	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002855), lincRNA [TCONS_l2_00005433]"	chr12:5135106-5135165	hs|12p13.32	Agilent_HUMAN_G3V2	TCONS_l2_00005433	TCONS_l2_00005433	chr12	  5135106	  5135165	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14136_PI429285431	5.379774	P	5.80454	P	0.744959551550193	0	lncRNA	15786-1_{1..991}	lnc-SBK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SBK2-1:1	chr19	 56037618	 56038608	-	lnc-SBK2-1	lnc-SBK2-1:1	XLOC_013413	linc-ISOC2-1	SSC5D	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90chr19:56027618-56030466"	NA	inter
CUST_23952_PI429285431	0.89103925	A	0.90429413	A	0.990854494177082	0	lncRNA	25508-1_{1..845}	lnc-CLEC18B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLEC18B-3:2	chr16	 74330521	 74331365	-	lnc-CLEC18B-3	lnc-CLEC18B-3:2	ENSG00000261404.1	AC009120.4	PSMD7	NA	chr16:74330673-74340186	inter
CUST_4318_PI429285431	7.0249257	P	7.405066	P	0.768362864836534	0	lncRNA	4273-1_{1..476}	"transcript_id ""ENST00000544089.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544089.1"" | genecode_v17"	chr12	 68738444	 68738919	+	ENSG00000256273.1	ENST00000544089.1	RP11-71J4.2	RP11-71J4.2-001	NA	NA	NA	inter
CUST_1353_PI429285431	6.690566	P	6.831078	P	0.907197141756423	0	lncRNA	1341-1_{1..587}	"transcript_id ""ENST00000469806.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000469806.1"" | genecode_v17"	chr3	 55369490	 55370076	-	ENSG00000242568.1	ENST00000469806.1	RP11-875H7.1	RP11-875H7.1-001	NA	NA	NA	inter
CUST_4253_PI429285431	1.7246466	A	2.1284125	A	0.755882608069457	0	lncRNA	4210-1_{1..300}	"transcript_id ""ENST00000546911.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546911.1"" | genecode_v17"	chr12	 50302665	 50302964	-	ENSG00000258135.1	ENST00000546911.1	RP11-70F11.11	RP11-70F11.11-004	FAIM2	NA	chr12:50292665-50297760	inter
CUST_16240_PI429285431	8.945613	P	8.853424	P	1.06598637627125	0	lncRNA	17947-1_{1..285}	lnc-RP11-342M21.2.1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-342M21.2.1-1:7	chr15	 67279496	 67279780	-	lnc-RP11-342M21.2.1-1	lnc-RP11-342M21.2.1-1:7	XLOC_011510	linc-LCTL-2	NA	NA	NA	inter
LNCA_21_P0014928	4.022685	P	4.2827997	P	0.835021529252957	0	lncRNA	ENST00000383038	XR_133276	XR_133276	NA	Hs.648247	LOC100653149	NA	ENST00000383038	THC2476450	NA	"PREDICTED: Homo sapiens hypothetical LOC100653149 (LOC100653149), miscRNA [XR_133276]"	chr22:16159014-16158955	hs|22q11.1	Agilent_HUMAN_G3V2	ENST00000383038	ENST00000383038	chr22	 16158955	 16159014	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12745_PI429285431	3.857005	P	3.2448497	P	1.52854105286837	0	lncRNA	14370-1_{1..312}	lnc-EXT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXT1-2:1	chr8	118725284	118725595	-	lnc-EXT1-2	lnc-EXT1-2:1	XLOC_007190	linc-RAD21-5	NA	NA	NA	inter
CUST_18728_PI429285431	1.8332105	A	0.9251751	A	1.87648843660293	0	lncRNA	20426-1_{1..366}	lnc-IL6-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL6-2:4	chr7	 22900166	 22900531	+	lnc-IL6-2	lnc-IL6-2:4	ENSG00000228649	AC005682.5	NA	NA	NA	inter
CUST_45170_PI429285431	7.812484	P	7.7557907	P	1.04007913442484	0	lncRNA	49645-1_{1..883}	"gi|356460960|ref|NR_045493.1| Homo sapiens LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) (LSM1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|356460960|ref|NR_045493.1| Homo sapiens LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) (LSM1), transcript variant 3, non-coding RNA"	Chr8	 38020839	 38021721	-	27257	NR_045493.1	NA	NA	NA	NA	NA	inter
CUST_41394_PI429285431	3.3014936	P	3.2238264	P	1.05531025124146	0	lncRNA	42505-1_{1..89}	ENST00000579870 ncrna:miRNA chromosome:GRCh37:4:88221647:88221735:-1 gene:ENSG00000263981 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579870 ncrna:miRNA chromosome:GRCh37:4:88221647:88221735:-1 gene:ENSG00000263981 gene_biotype:miRNA transcript_biotype:miRNA	chr4	 88221647	 88221735	-	ENSG00000263981	ENST00000579870	NA	NA	HSD17B13	NA	chr4:88224941-88231735	inter
CUST_32371_PI429285431	1.6049294	A	1.0293735	A	1.49025157701579	0	lncRNA	34048-1_{1..1603}	n338958|BC038401|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1386|NULL|-0.7651590|-0.2086439	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338958|BC038401|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1386|NULL|-0.7651590|-0.2086439	chr19	 56826622	 56828224	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38816_PI429285431	9.988173	P	9.27224	P	1.64254511852313	0	lncRNA	39809-1_{1..1362}	n384585|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jcu.2||-0.1174200|-0.3058106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384585|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jcu.2||-0.1174200|-0.3058106	chr5	  1628801	  1630162	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-55.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-54.70"	NA	inter
CUST_50432_PI429285431	3.4543598	P	3.5154536	P	0.958537115062327	0	lncRNA	54136-1_{1..1417}	hg19_lincRNAsTranscripts_TCONS_l2_00030181 range=chrX:40693887-40721317 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030181 range=chrX:40693887-40721317 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 40693887	 40695303	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25015_PI429285431	11.759014	P	11.491315	P	1.20388617946368	0	lncRNA	26555-1_{1..2047}	lnc-PPP2R4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP2R4-1:1	chr9	131971148	131973194	+	lnc-PPP2R4-1	lnc-PPP2R4-1:1	ENSG00000204055.4	RP11-247A12.2	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_IER5L:range=chr9:131939117-1319403315'pad=0,hg19_refFlat_IER5L:range=chr9:131939117-1319403315'pad=0 3'pad=0 strand=- repeatMasking=none,-114.30"	NA	inter
CUST_31987_PI429285431	1.7023981	A	1.5139983	A	1.13949911174238	0	lncRNA	33709-1_{1..1437}	n338546|AF116681|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|950|NULL|-0.4601080|-0.3846116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338546|AF116681|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|950|NULL|-0.4601080|-0.3846116	chr1	227237318	227238754	+	NA	NA	NA	NA	CDC42BPA	NA	chr1:227227318-227248751	inner
CUST_24597_PI429285431	2.0116365	A	1.102702	A	1.87765824487024	0	lncRNA	26146-1_{1..1347}	lnc-C8orf76-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C8orf76-1:3	chr8	124214448	124215794	-	lnc-C8orf76-1	lnc-C8orf76-1:3	ENSG00000204949.4	RP11-539E17.4	FAM83A	NA	chr8:124204448-124222318	inner
CUST_15167_PI429285431	4.3446374	P	4.3632	P	0.987215807150396	0	lncRNA	16829-1_{1..794}	lnc-CDH5-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH5-3:2	chr16	 65426897	 65427690	+	lnc-CDH5-3	lnc-CDH5-3:2	XLOC_011754	linc-CDH5-1	NA	NA	NA	inter
CUST_20687_PI429285431	1.458813	A	3.2012997	A	0.298854112336885	0	lncRNA	22323-1_{1..455}	lnc-SMG1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMG1-1:4	chr16	 19078640	 19079094	-	lnc-SMG1-1	lnc-SMG1-1:4	ENSG00000261465.2	RP11-626G11.5	TMC7	NA	chr16:19068640-19075264	inter
LNCA_21_P0011270	6.531394	P	6.916646	P	0.765645249245182	0	lncRNA	TCONS_l2_00008041	NA	NA	NA	NA	XLOC_l2_004385	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004385), lincRNA [TCONS_l2_00008041]"	chr14:42073062-42073003	hs|14q21.1	Agilent_HUMAN_G3V2	TCONS_l2_00008041	TCONS_l2_00008041	chr14	 42073003	 42073062	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00804922	4.714875	P	5.7796807	P	0.478037035771252	0	lncRNA	TCONS_00008193	NA	NA	NA	NA	XLOC_003641	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003641), lincRNA [TCONS_00008193]"	chr4:109599001-109599060	hs|4q25	Agilent_HUMAN_G3V2	TCONS_00008193	TCONS_00008193	chr4	109599001	109599060	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23925_PI429285431	1.1211827	A	0.9113742	A	1.15653465798296	0	lncRNA	25482-1_{1..443}	lnc-A1CF-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-A1CF-2:1	chr10	 52349302	 52349744	-	lnc-A1CF-2	lnc-A1CF-2:1	ENSG00000226561.1	RP11-512N4.3	SGMS1	"hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10chr10:52339302-52359592"	NA	inner
CUST_16751_PI429285431	1.6738342	A	1.6761463	A	0.99839865792247	0	lncRNA	18459-1_{1..440}	lnc-ANKRA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRA2-1:1	chr5	 72768698	 72769137	-	lnc-ANKRA2-1	lnc-ANKRA2-1:1	XLOC_004882	linc-FOXD1	NA	NA	NA	inter
CUST_27851_PI429285431	1.0714886	A	0.8895018	A	1.13444510523444	0	lncRNA	29444-1_{1..415}	n325087|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077577|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077577|-0.9710710|-0.3267580	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325087|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077577|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077577|-0.9710710|-0.3267580	chr20	  2135862	  2136276	+	NA	NA	NA	NA	STK35	NA	chr20:2125862-2129201	inter
CUST_31652_PI429285431	2.3248684	A	2.82194	A	0.708543532834928	0	lncRNA	33403-1_{1..2801}	n338174|CR624447|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|563|NULL|-1.2240000|-0.3832895	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338174|CR624447|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|563|NULL|-1.2240000|-0.3832895	chr22	 46646333	 46649133	+	NA	NA	NA	NA	PPARA	NA	chr22:46636333-46639653	inter
LNCA_21_P0009345	0.8733634	A	0.8756523	A	0.998414713314947	0	lncRNA	AK094767	NA	AK094767	NA	Hs.591170	FLJ37448	uncharacterized LOC400612	NA	THC2510391	NA	"BROAD Institute lincRNA (XLOC_012549), lincRNA [TCONS_00025728]"	chr17:62073804-62073745	hs|17q23.3	Agilent_HUMAN_G3V2	AK094767	AK094767	chr17	 62073745	 62073804	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7159_PI429285431	1.599663	A	2.0801892	A	0.716716165542224	0	lncRNA	7183-1_{1..312}	"transcript_id ""ENST00000411297.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411297.1"" | genecode_v17"	chr1	 97161412	 97161723	-	ENSG00000223229.1	ENST00000411297.1	RN7SKP270	RN7SKP270-201	PTBP2	NA	chr1:97151412-97171723	inter
CUST_49506_PI429285431	0.8837197	A	0.8939747	A	0.992916979336822	0	lncRNA	53297-1_{1..666}	hg19_lincRNAsTranscripts_TCONS_l2_00024658 range=chr6:26325070-26332220 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024658 range=chr6:26325070-26332220 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 26325070	 26325735	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29647_PI429285431	2.5482907	A	2.7065797	A	0.896087177822205	0	lncRNA	31408-1_{1..592}	n333243|AF529827|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000081295|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000081295|1.6733700|-0.1538336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333243|AF529827|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000081295|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000081295|1.6733700|-0.1538336	chr12	  8756881	  8757472	-	NA	NA	NA	NA	AICDA	NA	chr12:8754762-8765442	inner
CUST_30065_PI429285431	2.6369512	A	1.213866	A	2.68158354245711	0	lncRNA	31834-1_{1..250}	n334581|U69700|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221081|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221081|0.8281360|-0.2659100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334581|U69700|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221081|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221081|0.8281360|-0.2659100	chr1	114397114	114397363	-	NA	NA	NA	NA	PTPN22	NA	chr1:114387114-114409067	inner
LNCA_21_P0008535	7.0003624	P	7.1739597	P	0.886629149780061	0	lncRNA	TCONS_00023109	NA	NA	NA	NA	XLOC_011034	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011034), lincRNA [TCONS_00023109]"	chr14:55696107-55695952	hs|14q22.3	Agilent_HUMAN_G3V2	TCONS_00023109	TCONS_00023109	chr14	 55695952	 55696107	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00812310	0.87393045	A	0.8737613	A	1.00011725271915	0	lncRNA	TCONS_00029003	NA	NA	NA	NA	XLOC_013921	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013921), lincRNA [TCONS_00029003]"	chr21:35350604-35350663	hs|21q22.11	Agilent_HUMAN_G3V2	TCONS_00029003	TCONS_00029003	chr21	 35350604	 35350663	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37283_PI429285431	6.097086	P	6.6885405	P	0.66367346562242	0	lncRNA	38392-1_{1..648}	n345725|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1274|NULL|-1.3191700|-0.2325755	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n345725|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1274|NULL|-1.3191700|-0.2325755	chr8	101455557	101456204	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1551_PI429285431	0.8774072	A	1.6587237	A	0.581835609472806	0	lncRNA	1538-1_{1..554}	"transcript_id ""ENST00000496891.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000496891.1"" | genecode_v17"	chr3	167632927	167633480	+	ENSG00000244227.1	ENST00000496891.1	RP11-298O21.5	RP11-298O21.5-007	NA	NA	NA	inter
CUST_7543_PI429285431	6.084111	P	6.413859	P	0.795675454707236	0	lncRNA	9180-1_{1..3000}	lnc-WISP3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WISP3-3:1	chr6	111988172	111991171	+	lnc-WISP3-3	lnc-WISP3-3:1	ENSG00000249573	ENST00000511411	FYN	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FYN:range=chr6:111982942-1120412545'pad=0,hg19_refFlat_FYN:range=chr6:111982942-1120412545'pad=0 3'pad=0 strand=- repeatMasking=none,-99.00chr6:111982479-111999478"	NA	inner
LNCA_21_P0008302	0.8747948	A	0.87477374	A	1.00001459778617	0	lncRNA	TCONS_00022437	NA	NA	NA	NA	XLOC_010775	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010775), lincRNA [TCONS_00022437]"	chr14:25719348-25719407	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022437	TCONS_00022437	chr14	 25719348	 25719407	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36692_PI429285431	8.981551	P	9.147785	P	0.891165940230902	0	lncRNA	37875-1_{1..3000}	n345182|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_731|NULL|-1.3045500|-0.4064426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345182|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_731|NULL|-1.3045500|-0.4064426	chr12	 62999133	 63002132	+	NA	NA	NA	NA	MON2	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr12:62989133-62991363"	NA	inter
LNCA_21_P0014302	0.87497145	A	0.8751691	A	0.999863008843908	0	lncRNA	XR_109226	XR_109226	XR_109226	NA	NA	LOC100507288	uncharacterized LOC100507288	NA	THC2666603	NA	"PREDICTED: Homo sapiens hypothetical LOC100507288 (LOC100507288), miscRNA [XR_109226]"	chr15:96717496-96717555	hs|15q26.2	Agilent_HUMAN_G3V2	XR_109226	XR_109226	chr15	 96717496	 96717555	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41688_PI429285431	0.8972392	A	0.88707995	A	1.00706670765937	0	lncRNA	43156-1_{1..70}	ENST00000384965 ncrna:miRNA chromosome:GRCh37:9:111808509:111808578:-1 gene:ENSG00000207698 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384965 ncrna:miRNA chromosome:GRCh37:9:111808509:111808578:-1 gene:ENSG00000207698 gene_biotype:miRNA transcript_biotype:miRNA	chr9	111808509	111808578	-	ENSG00000207698	ENST00000384965	NA	NA	C9orf5	NA	chr9:111798509-111818578	inner
CUST_34363_PI429285431	0.88015467	A	0.87545586	A	1.00326227658311	0	lncRNA	35850-2_{3001..3273}	n341231|BX647937|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3699|NULL|2.4491100|-0.3552571	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341231|BX647937|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3699|NULL|2.4491100|-0.3552571	chr7	 41007276	 41007548	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22306_PI429285431	0.8853051	A	0.8906768	A	0.99628354446949	0	lncRNA	23905-1_{1..1275}	lnc-ATP12A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP12A-1:2	chr13	 25171525	 25172799	+	lnc-ATP12A-1	lnc-ATP12A-1:2	ENSG00000205822.5	TPTE2P6	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60"	NA	inter
CUST_35643_PI429285431	8.935639	P	8.212859	P	1.65035913064444	0	lncRNA	37058-1_{1..1603}	n342788|AK021715|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5291|NULL|-1.1033900|-0.2867900	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342788|AK021715|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5291|NULL|-1.1033900|-0.2867900	chr11	118618474	118620076	-	NA	NA	NA	NA	DDX6	NA	chr11:118608474-118630081	inner
CUST_40903_PI429285431	1.9039472	A	1.5869175	A	1.24576306117096	0	lncRNA	41589-1_{1..1673}	n410739|NR_038190_4|lncRNA|Homosapiens||RefGeneNoncode|NR_038190_4||-0.2442660|-0.2396587	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410739|NR_038190_4|lncRNA|Homosapiens||RefGeneNoncode|NR_038190_4||-0.2442660|-0.2396587	chr6	  3491568	  3493240	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-18.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.51;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90"	NA	inter
CUST_20007_PI429285431	1.4446694	A	1.439642	A	1.00349080685949	0	lncRNA	21660-1_{1..630}	lnc-FBXL5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXL5-2:1	chr4	 15429453	 15430082	-	lnc-FBXL5-2	lnc-FBXL5-2:1	ENSG00000249252.1	RP11-665G4.1	C1QTNF7	NA	chr4:15419453-15439538	inner
CUST_29638_PI429285431	4.3604383	P	4.489683	P	0.914309997380637	0	lncRNA	31399-1_{1..379}	n333214|AF467654|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000080359|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000080359|3.2538900|-0.0495156	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333214|AF467654|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000080359|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000080359|3.2538900|-0.0495156	chr11	 92714829	 92715207	+	NA	NA	NA	NA	MTNR1B	NA	chr11:92704829-92715948	inner
CUST_37167_PI429285431	0.92019916	A	1.997256	A	0.473994807518775	0	lncRNA	38284-1_{1..1613}	n345603|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1152|NULL|-1.2919400|-0.3782150	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345603|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1152|NULL|-1.2919400|-0.3782150	chr3	156894241	156895853	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31125_PI429285431	0.89105046	A	1.069001	A	0.883957835323315	0	lncRNA	32920-1_{1..296}	n337431|DQ884942|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393977|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393977|-1.0257300|-0.3182311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337431|DQ884942|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393977|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393977|-1.0257300|-0.3182311	chr9	 16583058	 16583353	-	NA	NA	NA	NA	BNC2	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40chr9:16573058-16724976"	NA	inner
CUST_1338_PI429285431	0.8912668	A	0.9030578	A	0.991860408927278	0	lncRNA	1327-1_{1..574}	"transcript_id ""ENST00000442567.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442567.2"" | genecode_v17"	chr3	 34566310	 34566883	-	ENSG00000227498.2	ENST00000442567.2	AC018359.3	AC018359.3-001	NA	NA	NA	inter
LNCA_21_P0006908	5.926863	P	6.2858877	P	0.779691493605327	0	lncRNA	TCONS_00018329	NA	NA	NA	NA	XLOC_008608	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008608), lincRNA [TCONS_00018329]"	chr10:110600359-110600418	hs|10q25.1	Agilent_HUMAN_G3V2	TCONS_00018329	TCONS_00018329	chr10	110600359	110600418	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3560_PI429285431	1.6879817	A	2.4878206	A	0.574413316360967	0	lncRNA	3530-1_{1..743}	"transcript_id ""ENST00000417135.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417135.1"" | genecode_v17"	chr9	137185777	137186519	-	ENSG00000223729.1	ENST00000417135.1	RP11-145E17.2	RP11-145E17.2-001	NA	NA	NA	inter
CUST_14417_PI429285431	0.91470027	A	0.91675955	A	0.998573634102213	0	lncRNA	16078-1_{1..3000}	lnc-CNTN1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CNTN1-1:2	chr12	 40928513	 40931512	+	lnc-CNTN1-1	lnc-CNTN1-1:2	XLOC_009713	linc-CNTN1	LOC100506072	NA	chr12:40936368-40938586	inter
CUST_46335_PI429285431	4.8165298	P	4.130855	P	1.60845413701734	0	lncRNA	50561-1_{1..1310}	"gi|375163497|ref|NR_046321.1| Homo sapiens glutathione peroxidase 2 (gastrointestinal) (GPX2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375163497|ref|NR_046321.1| Homo sapiens glutathione peroxidase 2 (gastrointestinal) (GPX2), transcript variant 3, non-coding RNA"	Chr14	 65405870	 65407179	-	2877	NR_046321.1	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
CUST_3859_PI429285431	6.8577814	P	7.185023	P	0.797058986391327	0	lncRNA	3828-1_{1..519}	"transcript_id ""ENST00000526112.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526112.1"" | genecode_v17"	chr11	 12559630	 12560148	-	ENSG00000254847.1	ENST00000526112.1	RP11-51B23.3	RP11-51B23.3-001	PARVA	NA	chr11:12549630-12556903	inter
LNCA_21_P0014319	7.5858502	P	7.4890976	P	1.06936369274253	0	lncRNA	XR_109258	XR_109258	XR_109258	NA	Hs.190748	LOC100129781	uncharacterized LOC100129781	NA	THC2713632	NA	"PREDICTED: Homo sapiens hypothetical LOC100129781, transcript variant 1 (LOC100129781), miscRNA [XR_109258]"	chr16:14420083-14420142	hs|16p13.12	Agilent_HUMAN_G3V2	XR_109258	XR_109258	chr16	 14420083	 14420142	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005006	0.90376383	A	0.92553425	A	0.98502317985167	0	lncRNA	TCONS_00012092	NA	NA	NA	NA	XLOC_005622	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005622), lincRNA [TCONS_00012092]"	chr6:16126968-16126909	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00012092	TCONS_00012092	chr6	 16126909	 16126968	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35986_PI429285431	2.5876465	A	3.1092777	P	0.696583787156743	0	lncRNA	37328-1_{1..3000}	n344603|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_151|NULL|-1.2922800|-0.2500946	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344603|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_151|NULL|-1.2922800|-0.2500946	chr12	  9486479	  9489478	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
CUST_24018_PI429285431	0.9059422	A	0.91129273	A	0.996298163967572	0	lncRNA	25572-1_{1..401}	lnc-OST4-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OST4-2:4	chr2	 27236803	 27237203	-	lnc-OST4-2	lnc-OST4-2:4	ENSG00000205500.4	AC013472.3	MAPRE3	NA	chr2:27226803-27246841	inner
CUST_12878_PI429285431	5.0172935	P	4.968221	P	1.03459957212134	0	lncRNA	14506-1_{1..415}	lnc-KAT2B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KAT2B-2:2	chr3	 20389489	 20389903	+	lnc-KAT2B-2	lnc-KAT2B-2:2	XLOC_002595	linc-UBE2E2-2	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40"	NA	inter
CUST_696_PI429285431	0.920064	A	0.9528341	A	0.977541529677359	0	lncRNA	689-1_{1..891}	"transcript_id ""ENST00000589962.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589962.1"" | genecode_v17"	chr2	  6772832	  6773722	-	ENSG00000236172.2	ENST00000589962.1	AC097517.2	AC097517.2-032	NA	NA	NA	inter
CUST_46006_PI429285431	0.89281285	A	0.8921641	A	1.00044978035425	0	lncRNA	50290-1_{1..2159}	"gi|399498580|ref|NR_073075.1| Homo sapiens phospholipase C, zeta 1 (PLCZ1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|399498580|ref|NR_073075.1| Homo sapiens phospholipase C, zeta 1 (PLCZ1), transcript variant 2, non-coding RNA"	Chr12	 18836110	 18838268	-	89869	NR_073075.1	NA	NA	NA	NA	NA	inter
CUST_15822_PI429285431	4.4849815	P	4.5854936	P	0.932701860292673	0	lncRNA	17511-1_{1..751}	lnc-AL035696.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL035696.1-5:1	chr6	   156546	   157296	+	lnc-AL035696.1-5	lnc-AL035696.1-5:1	XLOC_005116	linc-DUSP22-4	NA	NA	NA	inter
CUST_31469_PI429285431	5.419979	P	5.689768	P	0.829440846031097	0	lncRNA	33236-1_{1..2328}	n337949|BC043587|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|334|NULL|-0.4242500|-0.1965554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337949|BC043587|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|334|NULL|-0.4242500|-0.1965554	chr15	 71477954	 71480281	-	NA	NA	NA	NA	THSD4	NA	chr15:71467954-71491362	inner
CUST_37720_PI429285431	2.3157532	A	1.240265	A	2.10743509560881	0	lncRNA	38819-1_{1..3000}	n346224|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1774|NULL|-1.5995900|-0.2887375	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346224|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1774|NULL|-1.5995900|-0.2887375	chr12	100550208	100553207	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18870_PI429285431	6.7638354	P	6.964795	P	0.869971714312563	0	lncRNA	20563-1_{1..322}	lnc-AADACL2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AADACL2-1:5	chr3	151501620	151501941	+	lnc-AADACL2-1	lnc-AADACL2-1:5	ENSG00000240602	RP11-64D22.2	NA	NA	NA	inter
CUST_46830_PI429285431	0.9212512	A	0.9015855	A	1.01372455322898	0	lncRNA	50969-1_{1..3000}	"gi|213385281|ref|NR_024461.1| Homo sapiens RAMP2 antisense RNA 1 (RAMP2-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|213385281|ref|NR_024461.1| Homo sapiens RAMP2 antisense RNA 1 (RAMP2-AS1), transcript variant 1, non-coding RNA"	Chr17	 40905932	 40908931	-	100190938	NR_024461.1	NA	NA	NA	"hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50"	NA	inter
CUST_39806_PI429285431	1.6439769	A	2.0837271	A	0.737262253201306	0	lncRNA	40715-1_{1..652}	n406216|NR_003673_2|lncRNA|Homosapiens||RefGeneNoncode|NR_003673_2||0.1275770|-0.2393423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406216|NR_003673_2|lncRNA|Homosapiens||RefGeneNoncode|NR_003673_2||0.1275770|-0.2393423	chr6	  2973756	  2974407	-	NA	NA	NA	NA	SERPINB6	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr6:2963756-2972399"	NA	inter
CUST_31691_PI429285431	0.8974556	A	2.3315544	A	0.37007797960357	0	lncRNA	33437-1_{1..3000}	n338218|BX648801|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|610|NULL|0.0886407|-0.3540070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338218|BX648801|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|610|NULL|0.0886407|-0.3540070	chr1	149816064	149819063	-	NA	NA	NA	NA	HIST2H2AA4	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30chr1:149822628-149823161"	NA	inter
CUST_33299_PI429285431	1.9814228	A	1.05237	A	1.904025499571	0	lncRNA	34882-1_{1..2196}	n340015|BC035898|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2468|NULL|0.1412780|-0.2932923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340015|BC035898|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2468|NULL|0.1412780|-0.2932923	chr10	 35894928	 35897123	-	NA	NA	NA	NA	GJD4	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_GJD4:range=chr10:35894496-358975545'pad=0,hg19_refFlat_GJD4:range=chr10:35894496-358975545'pad=0 3'pad=0 strand=+ repeatMasking=none,-112.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-53.09;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30chr10:35894338-35897863"	NA	inner
LNCA_21_P0010278	0.8782065	A	0.88700706	A	0.993918484383004	0	lncRNA	TCONS_00029124	NA	NA	NA	NA	XLOC_014070	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014070), lincRNA [TCONS_00029124]"	chr21:38411662-38411603	hs|21q22.13	Agilent_HUMAN_G3V2	TCONS_00029124	TCONS_00029124	chr21	 38411603	 38411662	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19772_PI429285431	6.634411	P	7.001778	P	0.775195983020765	0	lncRNA	21430-1_{1..709}	lnc-USP8-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP8-2:2	chr15	 50648297	 50649005	+	lnc-USP8-2	lnc-USP8-2:2	ENSG00000244879.2	CTD-3110H11.2	GABPB1	NA	chr15:50638297-50647605	inter
CUST_45156_PI429285431	6.9300523	P	7.076791	P	0.903290098659863	0	lncRNA	49633-1_{1..3000}	"gi|224494036|ref|NR_027140.1| Homo sapiens tumor necrosis factor receptor superfamily, member 10b (TNFRSF10B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224494036|ref|NR_027140.1| Homo sapiens tumor necrosis factor receptor superfamily, member 10b (TNFRSF10B), transcript variant 3, non-coding RNA"	Chr8	 22877646	 22880645	-	8795	NR_027140.1	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10"	NA	inter
LNCA_21_P0014165	1.3702085	A	0.8782182	A	1.40638374402134	0	lncRNA	XR_108671	XR_108671	XR_108671	NA	NA	LOC100506379	uncharacterized LOC100506379	NA	THC2610811	NA	"PREDICTED: Homo sapiens hypothetical LOC100506379, transcript variant 1 (LOC100506379), miscRNA [XR_108671]"	chr6:10746747-10746688	hs|6p24.2	Agilent_HUMAN_G3V2	XR_108671	XR_108671	chr6	 10746688	 10746747	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26527_PI429285431	4.2665277	P	3.9601126	P	1.23663101988629	0	lncRNA	28034-1_{1..570}	lnc-HBEGF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HBEGF-1:1	chr5	139736867	139737436	-	lnc-HBEGF-1	lnc-HBEGF-1:1	ENSG00000253965.1	CTC-329D1.3	SLC4A9	NA	chr5:139739787-139747379	inter
CUST_34841_PI429285431	5.2792253	P	5.2536664	P	1.0178739400548	0	lncRNA	36269-1_{1..1615}	n341745|CR612326|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4218|NULL|-1.2653200|-0.3194613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341745|CR612326|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4218|NULL|-1.2653200|-0.3194613	chr9	108418649	108420263	+	NA	NA	NA	NA	TAL2	NA	chr9:108424738-108425393	inter
LNCA_21_P0010106	2.8523583	A	2.7525616	A	1.07162244226715	0	lncRNA	TCONS_00028608	NA	NA	NA	NA	XLOC_013643	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013643), lincRNA [TCONS_00028608]"	chr20:5488532-5488473	hs|20p12.3	Agilent_HUMAN_G3V2	TCONS_00028608	TCONS_00028608	chr20	  5488473	  5488532	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22154_PI429285431	3.6285818	P	3.6320217	P	0.997618483334816	0	lncRNA	23755-1_{1..739}	lnc-PTHLH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTHLH-1:1	chr12	 28342880	 28343618	-	lnc-PTHLH-1	lnc-PTHLH-1:1	ENSG00000247934.3	RP11-967K21.1	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10"	NA	inter
LNCA_21_P0005374	0.97562855	A	1.0321336	A	0.961590767824932	0	lncRNA	TCONS_00013425	NA	NA	NA	NA	XLOC_006059	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006059), lincRNA [TCONS_00013425]"	chr7:41148108-41148167	hs|7p14.1	Agilent_HUMAN_G3V2	TCONS_00013425	TCONS_00013425	chr7	 41148108	 41148167	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002338	0.8731769	A	0.87410486	A	0.999356993959373	0	lncRNA	TCONS_00003991	NA	NA	NA	NA	XLOC_001816	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001816), lincRNA [TCONS_00003991]"	chr2:206711937-206711996	hs|2q33.3	Agilent_HUMAN_G3V2	TCONS_00003991	TCONS_00003991	chr2	206711937	206711996	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19512_PI429285431	0.9000478	A	0.88867944	A	1.00791107517134	0	lncRNA	21168-1_{1..308}	lnc-N4BP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-N4BP1-1:1	chr16	 48482180	 48482487	-	lnc-N4BP1-1	lnc-N4BP1-1:1	ENSG00000261802.1	RP11-44I10.6	NA	NA	NA	inter
CUST_40710_PI429285431	2.249296	A	2.218241	A	1.02175903458849	0	lncRNA	41450-1_{1..3000}	n410281|NR_037177_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_2||0.3014790|-0.3246731	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410281|NR_037177_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_2||0.3014790|-0.3246731	chr6	  4094054	  4097053	+	NA	NA	NA	NA	C6orf201	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60chr6:4084054-4113637"	NA	inner
CUST_4852_PI429285431	3.0460808	A	1.866655	A	2.26486616287253	0	lncRNA	4795-1_{1..652}	"transcript_id ""ENST00000557544.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557544.1"" | genecode_v17"	chr14	 62147759	 62148410	-	ENSG00000258777.1	ENST00000557544.1	HIF1A-AS1	HIF1A-AS1-001	HIF1A	NA	chr14:62162119-62172541	inner
CUST_26118_PI429285431	0.88067067	A	0.8750968	A	1.00387098525975	0	lncRNA	27629-1_{1..625}	lnc-SPG11-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPG11-3:1	chr15	 44719307	 44719931	-	lnc-SPG11-3	lnc-SPG11-3:1	ENSG00000259595.1	RP11-516C1.1	CTDSPL2	"hg19_refFlat_CASC4:range=chr15:44581228-447056045'pad=0,hg19_refFlat_CASC4:range=chr15:44581228-447056045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20chr15:44719579-44729342"	NA	inter
CUST_27763_PI429285431	1.3152244	A	1.2660319	A	1.03468563127356	0	lncRNA	29348-1_{1..1416}	n324983|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000127822|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000127822|-0.2313730|-0.2774413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324983|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000127822|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000127822|-0.2313730|-0.2774413	chr20	 42718505	 42719920	-	NA	NA	NA	NA	JPH2	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20chr20:42740337-42768151"	NA	inner
CUST_36896_PI429285431	1.7384003	A	1.7973663	A	0.959951883962352	0	lncRNA	38056-1_{1..678}	n345369|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_918|NULL|-1.3389500|-0.1814013	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345369|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_918|NULL|-1.3389500|-0.1814013	chr19	  7427766	  7428443	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50487_PI429285431	4.403063	P	4.6025796	P	0.870842305237739	0	lncRNA	54183-1_{1..913}	hg19_lincRNAsTranscripts_TCONS_l2_00030289 range=chrX:100764586-100790666 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030289 range=chrX:100764586-100790666 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	100764586	100765498	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006225	3.4482398	P	3.5575743	P	0.927015585785127	0	lncRNA	TCONS_00016155	NA	NA	NA	NA	XLOC_007562	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007562), lincRNA [TCONS_00016155]"	chr9:128172845-128173281	hs|9q33.3	Agilent_HUMAN_G3V2	TCONS_00016155	TCONS_00016155	chr9	128172845	128173281	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011367	0.8751373	A	0.8761023	A	0.999331336625819	0	lncRNA	TCONS_l2_00009004	NA	NA	NA	NA	XLOC_l2_004870	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004870), lincRNA [TCONS_l2_00009004]"	chr15:33595837-33595778	hs|15q13.3	Agilent_HUMAN_G3V2	TCONS_l2_00009004	TCONS_l2_00009004	chr15	 33595778	 33595837	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36680_PI429285431	0.88711643	A	0.89224654	A	0.996450393518425	0	lncRNA	37864-2_{3001..6000}	n345170|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_719|NULL|-1.2853000|-0.3165992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345170|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_719|NULL|-1.2853000|-0.3165992	chr12	 19689270	 19692269	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70"	NA	inter
CUST_15537_PI429285431	6.3440447	P	6.491037	P	0.903131330361561	0	lncRNA	17222-1_{1..281}	lnc-STIL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STIL-1:1	chr1	 47873992	 47874272	-	lnc-STIL-1	lnc-STIL-1:1	XLOC_000822	linc-STIL-2	FOXE3	NA	chr1:47881744-47883724	inter
LNCA_21_P0012712	9.810978	P	11.519382	M	0.305998396922961	0	lncRNA	ENST00000515691	NA	NA	NA	NA	XLOC_l2_010586	NA	ENST00000515691	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010586), lincRNA [TCONS_l2_00021530]"	chr4:12249618-12249677	hs|4p15.33	Agilent_HUMAN_G3V2	ENST00000515691	ENST00000515691	chr4	 12249618	 12249677	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_187_PI429285431	1.731545	A	1.4346846	A	1.2284681040096	0	lncRNA	177-1_{1..490}	"transcript_id ""ENST00000424084.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424084.1"" | genecode_v17"	chr1	 25370198	 25370687	-	ENSG00000233755.1	ENST00000424084.1	RP4-799D16.1	RP4-799D16.1-001	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40"	NA	inter
CUST_30544_PI429285431	11.511267	P	11.078678	P	1.34965343636667	0	lncRNA	32324-1_{1..358}	n335717|CR624531|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000303726|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000303726|-1.1536400|-0.1871551	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335717|CR624531|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000303726|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000303726|-1.1536400|-0.1871551	chr14	100610215	100610572	+	NA	NA	NA	NA	EVL	NA	chr14:100600215-100610573	inner
CUST_32078_PI429285431	1.3547044	A	1.7951555	A	0.736904158389763	0	lncRNA	33785-1_{1..3000}	n338640|U50531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1054|NULL|-1.1080100|-0.3197248	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n338640|U50531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1054|NULL|-1.1080100|-0.3197248	chr13	 33078642	 33081641	-	NA	NA	NA	NA	N4BP2L2	NA	chr13:33068642-33093532	inner
CUST_23402_PI429285431	7.7691073	P	7.612142	P	1.11493940165173	0	lncRNA	24970-1_{1..773}	lnc-TMEM71-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM71-1:1	chr8	133856471	133857243	-	lnc-TMEM71-1	lnc-TMEM71-1:1	ENSG00000223697.1	AF230666.2	PHF20L1	"hg19_refFlat_PHF20L1:range=chr8:133790075-1338581685'pad=0,hg19_refFlat_PHF20L1:range=chr8:133790075-1338581685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70chr8:133846471-133861052"	NA	inner
CUST_38999_PI429285431	5.0446267	P	4.2210135	P	1.76983295681602	0	lncRNA	39980-1_{1..2750}	n385291|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vwb.1||-1.1218600|-0.3579104	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385291|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vwb.1||-1.1218600|-0.3579104	chr7	140419137	140421886	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25932_PI429285431	2.915221	A	3.721055	P	0.572031302128171	0	lncRNA	27451-1_{1..566}	lnc-ARHGAP26-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARHGAP26-4:5	chr5	142051357	142051922	+	lnc-ARHGAP26-4	lnc-ARHGAP26-4:5	ENSG00000231185.2	AC005592.2	FGF1	NA	chr5:142041357-142061566	inner
CUST_15198_PI429285431	0.8855948	A	1.0753598	A	0.876748522890449	0	lncRNA	16866-1_{1..311}	lnc-USO1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USO1-1:1	chr4	 76746292	 76746602	+	lnc-USO1-1	lnc-USO1-1:1	XLOC_003578	linc-ART3	NA	NA	NA	inter
LNCA_21_P0005779	5.7716837	P	5.989442	P	0.859900536471792	0	lncRNA	TCONS_00014883	NA	NA	NA	NA	XLOC_006953	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006953), lincRNA [TCONS_00014883]"	chr8:144511248-144511307	hs|8q24.3	Agilent_HUMAN_G3V2	TCONS_00014883	TCONS_00014883	chr8	144511248	144511307	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17465_PI429285431	4.6987333	P	5.011079	P	0.805331293652494	0	lncRNA	19190-1_{1..722}	lnc-IRF2-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IRF2-2:6	chr4	185303288	185304009	-	lnc-IRF2-2	lnc-IRF2-2:6	XLOC_004205	linc-ENPP6-2	IRF2	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10chr4:185308876-185313524"	NA	inter
LNCA_21_P0003469	0.8702676	A	0.87342167	A	0.997816153342743	0	lncRNA	XR_110053	XR_110053	XR_110053	NA	Hs.112674	LOC100507160	uncharacterized LOC100507160	ENST00000512911	THC2631145	NA	"PREDICTED: Homo sapiens hypothetical LOC100507160 (LOC100507160), miscRNA [XR_110053]"	chr4:59853214-59853155	hs|4q13.1	Agilent_HUMAN_G3V2	XR_110053	XR_110053	chr4	 59853155	 59853214	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19634_PI429285431	5.9881167	P	5.474742	P	1.42738518126829	0	lncRNA	21290-1_{1..337}	lnc-NUDCD2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUDCD2-2:3	chr5	162683857	162684193	-	lnc-NUDCD2-2	lnc-NUDCD2-2:3	ENSG00000250061.1	RP11-541P9.3	NA	NA	NA	inter
CUST_40535_PI429285431	0.90926397	A	0.9237161	A	0.990032554399242	0	lncRNA	41293-1_{1..1154}	n409644|NR_034028|lncRNA|Homosapiens||RefGeneNoncode|NR_034028||0.7759220|-0.4235768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409644|NR_034028|lncRNA|Homosapiens||RefGeneNoncode|NR_034028||0.7759220|-0.4235768	chr12	   368154	   369307	-	NA	NA	NA	NA	SLC6A13	NA	chr12:358154-372039	inner
CUST_16353_PI429285431	0.90324295	A	2.4401262	A	0.344629176208585	0	lncRNA	18053-1_{1..607}	lnc-ROPN1B-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ROPN1B-5:1	chr3	125368784	125369390	+	lnc-ROPN1B-5	lnc-ROPN1B-5:1	XLOC_002792	linc-ROPN1B-2	NA	NA	NA	inter
LNCA_21_P0004260	6.1986833	P	6.45347	P	0.83811103879516	0	lncRNA	TCONS_00009987	NA	NA	NA	NA	XLOC_004413	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004413), lincRNA [TCONS_00009987]"	chr5:67807557-67807616	hs|5q13.1	Agilent_HUMAN_G3V2	TCONS_00009987	TCONS_00009987	chr5	 67807557	 67807616	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20415_PI429285431	0.900442	A	1.0390373	A	0.9084032042203	0	lncRNA	22057-1_{1..710}	lnc-CCRL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCRL2-1:1	chr3	 46453946	 46454655	+	lnc-CCRL2-1	lnc-CCRL2-1:1	ENSG00000240310.1	RP11-24F11.5	CCRL2	NA	chr3:46448721-46451014	inter
CUST_10485_PI429285431	0.9101721	A	1.0539998	A	0.905114553588816	0	lncRNA	12013-1_{1..564}	lnc-FOXG1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXG1-3:2	chr14	 27349576	 27350139	+	lnc-FOXG1-3	lnc-FOXG1-3:2	XLOC_010779	linc-FOXG1-2	NA	NA	NA	inter
LNCA_21_P0004367	0.9082271	A	0.93376595	A	0.982453581279137	0	lncRNA	TCONS_00010281	NA	NA	NA	NA	XLOC_004751	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004751), lincRNA [TCONS_00010281]"	chr5:21138977-21138918	hs|5p14.3	Agilent_HUMAN_G3V2	TCONS_00010281	TCONS_00010281	chr5	 21138918	 21138977	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33060_PI429285431	1.2080737	A	2.2764428	A	0.476857760079161	0	lncRNA	34670-2_{3001..3662}	n339748|BC042533|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2194|NULL|2.1204800|-0.2451787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339748|BC042533|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2194|NULL|2.1204800|-0.2451787	chr3	194432149	194432810	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9816_PI429285431	0.91628414	A	0.91236305	A	1.00272158929641	0	lncRNA	11333-1_{1..1860}	lnc-LARGE-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LARGE-2:1	chr22	 34680598	 34682457	-	lnc-LARGE-2	lnc-LARGE-2:1	XLOC_014355	linc-LARGE-3	NA	NA	NA	inter
LNCA_21_P0010222	7.1146812	P	5.7641034	P	2.55014238329257	0	lncRNA	TCONS_00028969	NA	NA	NA	NA	XLOC_013866	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013866), lincRNA [TCONS_00028969]"	chr21:17267005-17267064	hs|21q21.1	Agilent_HUMAN_G3V2	TCONS_00028969	TCONS_00028969	chr21	 17267005	 17267064	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25901_PI429285431	0.9106995	A	1.3606791	A	0.732053199280094	0	lncRNA	27420-1_{1..552}	lnc-SULF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SULF1-1:1	chr8	 70631912	 70632463	+	lnc-SULF1-1	lnc-SULF1-1:1	ENSG00000254557.1	RP11-102F4.2	SLCO5A1	NA	chr8:70621912-70641957	inner
LNCA_19_P00802238	4.18432	P	2.852653	A	2.51693332641274	0	lncRNA	TCONS_00018589	NA	NA	NA	NA	XLOC_008925	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008925), lincRNA [TCONS_00018589]"	chr10:103464333-103464274	hs|10q24.32	Agilent_HUMAN_G3V2	TCONS_00018589	TCONS_00018589	chr10	103464274	103464333	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4365_PI429285431	3.782038	A	1.5282569	A	4.76931178713474	0	lncRNA	4319-1_{1..238}	"transcript_id ""ENST00000549551.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549551.1"" | genecode_v17"	chr12	 90313469	 90313706	+	ENSG00000258216.1	ENST00000549551.1	RP11-654D12.2	RP11-654D12.2-001	NA	"hg19_refFlat_BRWD1:range=chr21:40670344-406854175'pad=0,hg19_refFlat_BRWD1:range=chr21:40670344-406854175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRWD1:range=chr21:40568185-406854175'pad=0,hg19_refFlat_BRWD1:range=chr21:40568185-406854175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRWD1:range=chr21:40558952-406854175'pad=0,hg19_refFlat_BRWD1:range=chr21:40558952-406854175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20"	NA	inter
CUST_48457_PI429285431	8.338919	P	6.4231715	P	3.77309258039737	0	lncRNA	52310-2_{3001..3263}	hg19_lincRNAsTranscripts_TCONS_l2_00001786 range=chr1:219781270-219785789 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001786 range=chr1:219781270-219785789 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	219784270	219784532	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42543_PI429285431	0.9245137	A	0.9145434	A	1.0069348206086	0	lncRNA	45349-1_{1..65}	ENST00000390866 ncrna:snoRNA chromosome:GRCh37:2:57771670:57771734:1 gene:ENSG00000212168 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390866 ncrna:snoRNA chromosome:GRCh37:2:57771670:57771734:1 gene:ENSG00000212168 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 57771670	 57771734	+	ENSG00000212168	ENST00000390866	NA	NA	NA	NA	NA	inter
CUST_33803_PI429285431	1.1864413	A	1.0860305	A	1.07207868797636	0	lncRNA	35355-1_{1..590}	n340592|AF086084|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3054|NULL|-1.1307400|-0.4874484	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340592|AF086084|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3054|NULL|-1.1307400|-0.4874484	chr5	115549571	115550160	+	NA	NA	NA	NA	COMMD10	NA	chr5:115539571-115560152	inner
CUST_37819_PI429285431	12.055691	P	11.17587	P	1.84014697389444	0	lncRNA	38910-1_{1..265}	n346337|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1887|NULL|-1.3123900|-0.1908692	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346337|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1887|NULL|-1.3123900|-0.1908692	chr9	 88989957	 88990221	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50614_PI429285431	1.0472225	A	1.3570416	A	0.806742910636016	0	lncRNA	54299-1_{1..467}	hg19_lincRNAsTranscripts_TCONS_l2_00003356 range=chr10:3298669-3299721 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003356 range=chr10:3298669-3299721 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	  3298669	  3299135	-	NA	NA	NA	NA	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
CUST_15055_PI429285431	0.8815714	A	1.6424291	A	0.590145377694627	0	lncRNA	16718-1_{1..878}	lnc-TNP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNP1-2:1	chr2	217730374	217731251	-	lnc-TNP1-2	lnc-TNP1-2:1	XLOC_002486	linc-TNP1-1	TNP1	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.71;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.50;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10chr2:217724181-217724782"	NA	inter
CUST_27221_PI429285431	1.6006968	A	3.080765	A	0.358471865692774	0	lncRNA	28765-1_{1..1900}	n324355|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042502|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042502|-1.2899000|-0.4145341	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324355|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042502|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042502|-1.2899000|-0.4145341	chr6	143329253	143331152	-	NA	NA	NA	NA	AIG1	NA	chr6:143382023-143410412	inner
CUST_250_PI429201921	1.0382943	A	2.6761882	A	0.321325214691638	0	lncRNA	188-3_{6001..6374}	TC07002271.hg.1	TCONS_l2_00025816-XLOC_l2_013360 // Broad TUCP // linc-CDK13-1 chr7:+:39899607-39905982 // chr7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr7:+:39899607-39905982	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00025816-XLOC_l2_013360	linc-CDK13-1	chr7	 39899607	 39905982	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008338	0.8776916	A	1.5015872	A	0.648916340319676	0	lncRNA	TCONS_00022514	NA	NA	NA	NA	XLOC_010838	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010838), lincRNA [TCONS_00022514]"	chr14:56512600-56512659	hs|14q22.3	Agilent_HUMAN_G3V2	TCONS_00022514	TCONS_00022514	chr14	 56512600	 56512659	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003819	0.87665725	A	0.88394266	A	0.994962867713592	0	lncRNA	TCONS_00008705	NA	NA	NA	NA	XLOC_004216	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004216), lincRNA [TCONS_00008705]"	chr4:188119486-188119427	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008705	TCONS_00008705	chr4	188119427	188119486	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42480_PI429285431	0.8961339	A	0.8895153	A	1.00459820337039	0	lncRNA	45238-1_{1..77}	ENST00000411362 ncrna:snoRNA chromosome:GRCh37:12:64969445:64969521:1 gene:ENSG00000223294 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000411362 ncrna:snoRNA chromosome:GRCh37:12:64969445:64969521:1 gene:ENSG00000223294 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 64969445	 64969521	+	ENSG00000223294	ENST00000411362	NA	NA	NA	NA	NA	inter
LNCA_21_P0010554	1.7032218	A	1.9320009	A	0.85335675086262	0	lncRNA	TCONS_l2_00000563	NA	NA	NA	NA	XLOC_l2_000399	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000399), lincRNA [TCONS_l2_00000563]"	chr1:143398881-143401738	hs|1q21.1	Agilent_HUMAN_G3V2	TCONS_l2_00000563	TCONS_l2_00000563	chr1	143398881	143401738	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17195_PI429285431	0.88072205	A	0.888501	A	0.994622553249601	0	lncRNA	18908-1_{1..387}	lnc-ANKRD50-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD50-5:1	chr4	127163976	127164362	-	lnc-ANKRD50-5	lnc-ANKRD50-5:1	XLOC_004065	linc-ANKRD50-3	NA	NA	NA	inter
CUST_50132_PI429285431	0.90500915	A	0.9047366	A	1.00018893511005	0	lncRNA	53858-3_{6001..8278}	hg19_lincRNAsTranscripts_TCONS_l2_00029068 range=chr9:132250802-132272182 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029068 range=chr9:132250802-132272182 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132256802	132259079	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70"	NA	inter
CUST_19118_PI429285431	14.276201	P	13.230431	P	2.06446791930282	0	lncRNA	20799-1_{1..651}	lnc-SERPINC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-SERPINC1-2:1	NA	NA	      650	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6987_PI429285431	1.3009272	A	0.9021211	A	1.31841640578655	0	lncRNA	6935-1_{1..1965}	"transcript_id ""ENST00000445088.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000445088.1"" | genecode_v17"	chr22	 37748230	 37750194	-	ENSG00000237862.1	ENST00000445088.1	RP1-63G5.7	RP1-63G5.7-001	NA	NA	NA	inter
CUST_16407_PI429285431	1.2228608	A	1.1631826	A	1.0422332598194	0	lncRNA	18104-1_{1..1044}	lnc-CDH11-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH11-1:2	chr16	 65210131	 65211174	-	lnc-CDH11-1	lnc-CDH11-1:2	XLOC_011976	linc-CDH11-6	NA	NA	NA	inter
CUST_48206_PI429285431	0.8863134	A	1.3116205	A	0.744680197966736	0	lncRNA	52069-1_{1..269}	hg19_lincRNAsTranscripts_TCONS_l2_00000435 range=chr1:98538887-98659112 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000435 range=chr1:98538887-98659112 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 98538887	 98539155	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23540_PI429285431	0.9009287	A	0.88777524	A	1.00915897274536	0	lncRNA	25107-1_{1..868}	lnc-SIX6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SIX6-1:1	chr14	 61020953	 61021820	+	lnc-SIX6-1	lnc-SIX6-1:1	ENSG00000258670.1	RP11-1042B17.3	SIX1	NA	chr14:61011112-61031634	inter
CUST_40418_PI429285431	1.2496109	A	1.7354833	A	0.714065142955582	0	lncRNA	41203-1_{1..1895}	n409284|NR_033489_4|lncRNA|Homosapiens||RefGeneNoncode|NR_033489_4||0.0070099|-0.2582652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409284|NR_033489_4|lncRNA|Homosapiens||RefGeneNoncode|NR_033489_4||0.0070099|-0.2582652	chr6	  2997615	  2999509	-	NA	NA	NA	NA	NQO2	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80chr6:3000067-3019994"	NA	inner
CUST_35234_PI429285431	0.89112544	A	1.5579863	A	0.629875735093903	0	lncRNA	36635-1_{1..2015}	n342227|AL035288|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4717|NULL|5.6287900|-0.0353657	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n342227|AL035288|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4717|NULL|5.6287900|-0.0353657	chr1	 17017712	 17019726	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22587_PI429285431	0.9031135	A	1.0944877	A	0.875771131877057	0	lncRNA	24171-1_{1..484}	lnc-TIMP3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMP3-5:1	chr22	 33718491	 33718974	+	lnc-TIMP3-5	lnc-TIMP3-5:1	ENSG00000230741.1	SC22CB-1D7.1	LARGE	NA	chr22:33708491-33728799	inner
CUST_25280_PI429285431	5.7700458	P	5.9809923	P	0.863970225737373	0	lncRNA	26810-1_{1..578}	lnc-C16orf58-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf58-1:1	chr16	 31499646	 31500223	-	lnc-C16orf58-1	lnc-C16orf58-1:1	ENSG00000260740.2	AC026471.6	C16orf58	"hg19_refFlat_SLC5A2:range=chr16:31494458-315018565'pad=0,hg19_refFlat_SLC5A2:range=chr16:31494458-315018565'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.50chr16:31500810-31509813"	NA	inner
CUST_16160_PI429285431	0.88732666	A	2.1580265	A	0.414458673497537	0	lncRNA	17866-1_{1..1475}	lnc-HIST1H2AI-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HIST1H2AI-1:2	chr6	 27729504	 27730978	+	lnc-HIST1H2AI-1	lnc-HIST1H2AI-1:2	XLOC_005221	linc-HIST1H2AI-1	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90"	NA	inter
LNCA_21_P0010501	8.108298	P	8.2589035	P	0.900872286600757	0	lncRNA	TCONS_00079053_HOTAIR	NA	NA	NA	NA	HOTAIR	NA	NA	NA	NA	"BROAD Institute lincRNA (HOTAIR), lincRNA [TCONS_00079053_HOTAIR]"	chr12:54350218-54350159	hs|12q13.13	Agilent_HUMAN_G3V2	TCONS_00079053_HOTAIR	TCONS_00079053_HOTAIR	chr12	 54350159	 54350218	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4790_PI429285431	0.8928258	A	0.89863276	A	0.995983011817011	0	lncRNA	4734-1_{1..453}	"transcript_id ""ENST00000556472.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000556472.1"" | genecode_v17"	chr14	 44913950	 44914402	-	ENSG00000258487.1	ENST00000556472.1	RP11-99L13.1	RP11-99L13.1-002	NA	NA	NA	inter
LNCA_21_P0009569	3.1277647	P	0.9226646	A	4.61106531040317	0	lncRNA	TCONS_00026548	NA	NA	NA	NA	XLOC_012868	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012868), lincRNA [TCONS_00026548]"	chr18:63922023-63921964	hs|18q22.1	Agilent_HUMAN_G3V2	TCONS_00026548	TCONS_00026548	chr18	 63921964	 63922023	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30108_PI429285431	1.9012151	A	1.2332191	A	1.5888643949186	0	lncRNA	31881-1_{1..329}	n334654|AB189434|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000242542|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000242542|0.0419608|-0.1742376	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334654|AB189434|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000242542|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000242542|0.0419608|-0.1742376	chr3	 46063332	 46063660	-	NA	NA	NA	NA	XCR1	NA	chr3:46062291-46068979	inner
CUST_14987_PI429285431	4.1800637	P	3.1302109	A	2.07031859968035	0	lncRNA	16650-1_{1..309}	lnc-C17orf97-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C17orf97-7:1	chr17	    56369	    56677	+	lnc-C17orf97-7	lnc-C17orf97-7:1	XLOC_012065	linc-C17orf97-2	RPH3AL	NA	chr17:62180-66601	inter
CUST_24605_PI429285431	6.5641956	P	6.7210464	P	0.896980918442848	0	lncRNA	26154-1_{1..521}	lnc-GGCT-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GGCT-1:3	chr7	 30634327	 30634847	-	lnc-GGCT-1	lnc-GGCT-1:3	ENSG00000196295.5	AC005154.6	GARS	NA	chr7:30634181-30644411	inner
CUST_33490_PI429285431	1.5583215	A	1.7924657	A	0.85018917785861	0	lncRNA	35062-1_{1..613}	n340229|AY029324|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2690|NULL|-1.1629100|-0.4008008	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340229|AY029324|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2690|NULL|-1.1629100|-0.4008008	chr4	140291792	140292404	+	NA	NA	NA	NA	NAA15	NA	chr4:140281792-140302401	inner
CUST_252_PI429285431	2.0838401	A	2.0839272	A	0.999939628702993	0	lncRNA	244-1_{1..683}	"transcript_id ""ENST00000456878.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456878.1"" | genecode_v17"	chr1	 60580547	 60581229	+	ENSG00000238242.1	ENST00000456878.1	RP11-575B7.3	RP11-575B7.3-001	NA	NA	NA	inter
CUST_26488_PI429285431	6.0820217	P	5.738194	P	1.26911930698982	0	lncRNA	27997-1_{1..656}	lnc-AMDHD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AMDHD1-2:1	chr12	 96421176	 96421831	+	lnc-AMDHD1-2	lnc-AMDHD1-2:1	ENSG00000257715.1	RP11-256L6.2	LTA4H	"hg19_refFlat_LTA4H:range=chr12:96394767-964292975'pad=0,hg19_refFlat_LTA4H:range=chr12:96394767-964292975'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_LTA4H:range=chr12:96394767-964371535'pad=0,hg19_refFlat_LTA4H:range=chr12:96394767-964371535'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_LTA4H:range=chr12:96396774-964371535'pad=0,hg19_refFlat_LTA4H:range=chr12:96396774-964371535'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90chr12:96411176-96429365"	NA	inner
CUST_37691_PI429285431	2.4934154	A	2.932037	A	0.737839228722956	0	lncRNA	38783-1_{1..3000}	n346181|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1731|NULL|-1.5273900|-0.2317877	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n346181|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1731|NULL|-1.5273900|-0.2317877	chr17	  6795262	  6798261	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44391_PI429285431	0.9092634	A	0.93007386	A	0.985678826046523	0	lncRNA	49010-1_{1..3000}	"gi|334085197|ref|NR_038303.1| Homo sapiens uncharacterized LOC100505702 (LOC100505702), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|334085197|ref|NR_038303.1| Homo sapiens uncharacterized LOC100505702 (LOC100505702), transcript variant 1, non-coding RNA"	Chr4	 79567148	 79570147	+	100505702	NR_038303.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10"	NA	inter
CUST_34973_PI429285431	0.90581065	A	1.1674577	A	0.834135086925282	0	lncRNA	36390-1_{1..1495}	n341897|CR600797|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4377|NULL|0.0219576|-0.2951504	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341897|CR600797|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4377|NULL|0.0219576|-0.2951504	chr6	 64527230	 64528724	+	NA	NA	NA	NA	EYS	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30chr6:64517230-64542559"	NA	inner
LNCA_21_P0008595	1.7707272	A	1.4360821	A	1.26106715075719	0	lncRNA	TCONS_00023313	NA	NA	NA	NA	XLOC_011181	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011181), lincRNA [TCONS_00023313]"	chr15:24779473-24779532	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023313	TCONS_00023313	chr15	 24779473	 24779532	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27417_PI429285431	0.9034349	A	0.9066374	A	0.9977826580968	0	lncRNA	28982-1_{1..470}	n324587|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039917|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039917|-1.0413400|-0.2833692	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324587|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039917|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039917|-1.0413400|-0.2833692	chr6	 14337984	 14338453	-	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-29.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30"	NA	inter
CUST_11770_PI429285431	6.7555203	P	6.474805	P	1.21479704141358	0	lncRNA	13349-1_{1..3000}	lnc-AF127577.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AF127577.1-5:1	chr21	 16214102	 16217101	+	lnc-AF127577.1-5	lnc-AF127577.1-5:1	XLOC_013863	linc-USP25-3	NA	NA	NA	inter
CUST_27593_PI429285431	11.300152	P	11.851727	P	0.682274877523837	0	lncRNA	29172-1_{1..608}	n324796|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000207543|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000207543|-1.0569200|-0.2710701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324796|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000207543|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000207543|-1.0569200|-0.2710701	chr21	 38617426	 38618033	-	NA	NA	NA	NA	DSCR3	NA	chr21:38607426-38637156	inner
LNCA_21_P0013822	0.8810488	A	4.866101	P	0.0631509304192599	0	lncRNA	TCONS_l2_00030544	NA	NA	NA	NA	XLOC_l2_015766	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015766), lincRNA [TCONS_l2_00030544]"	chrX:79526427-79526368	hs|Xq21.1	Agilent_HUMAN_G3V2	TCONS_l2_00030544	TCONS_l2_00030544	chrX	 79526368	 79526427	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30314_PI429285431	0.89618766	A	1.2527828	A	0.781005633568625	0	lncRNA	32090-1_{1..201}	n335223|AY539968|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255263|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255263|-0.9225160|-0.3210566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335223|AY539968|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255263|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255263|-0.9225160|-0.3210566	chrX	 10532911	 10533111	-	NA	NA	NA	NA	MID1	NA	chrX:10522911-10543112	inner
LNCA_21_P0007188	1.7841271	A	0.8877585	A	1.8613748248525	0	lncRNA	THC2785377	NA	NA	NA	NA	XLOC_009088	NA	NA	THC2785377	NA	"BROAD Institute lincRNA (XLOC_009088), lincRNA [TCONS_00019258]"	chr11:022513444-022513503	hs|11p14.3	Agilent_HUMAN_G3V2	THC2785377	THC2785377	chr11	 22513444	 22513503	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5820_PI429285431	1.2639908	A	1.547921	A	0.82135043809926	0	lncRNA	5747-1_{1..544}	"transcript_id ""ENST00000590309.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590309.1"" | genecode_v17"	chr17	 33400850	 33401393	-	ENSG00000267457.1	ENST00000590309.1	RP5-837J1.4	RP5-837J1.4-001	RFFL	NA	chr17:33390850-33411393	inter
CUST_18_PI429201921	5.656691	P	5.5218177	P	1.09799638159141	0	lncRNA	19-1_{1..872}	TC0Y000249.hg.1	TCONS_l2_00030890-XLOC_l2_015878 // Broad TUCP // linc-USP9Y-13 chrY:+:9385993-9386866 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:+:9385993-9386866	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00030890-XLOC_l2_015878	linc-USP9Y-13	chrY	  9385993	  9386866	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009393	0.87652266	A	2.5001562	A	0.324517112090453	0	lncRNA	TCONS_00025963	NA	NA	NA	NA	XLOC_012281	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012281), lincRNA [TCONS_00025963]"	chr17:63107070-63113217	hs|17q24.1	Agilent_HUMAN_G3V2	TCONS_00025963	TCONS_00025963	chr17	 63107070	 63113217	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11858_PI429285431	0.90325886	A	0.8833289	A	1.01391025525117	0	lncRNA	13436-1_{1..733}	lnc-CDH9-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH9-7:1	chr5	 29143293	 29144025	-	lnc-CDH9-7	lnc-CDH9-7:1	XLOC_004764	linc-CDH9-7	NA	NA	NA	inter
CUST_24239_PI429285431	0.89387023	A	1.5879104	A	0.618120419447596	0	lncRNA	25790-1_{1..1150}	lnc-SNX20-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNX20-1:1	chr16	 50774591	 50775740	-	lnc-SNX20-1	lnc-SNX20-1:1	ENSG00000261644.1	RP11-327F22.2	CYLD	NA	chr16:50775961-50784627	inter
CUST_6642_PI429285431	0.9038763	A	0.91741896	A	0.990656864282792	0	lncRNA	6588-1_{1..460}	"transcript_id ""ENST00000605338.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605338.1"" | genecode_v17"	chr20	 10981952	 10982411	+	ENSG00000270777.1	ENST00000605338.1	RP11-103J8.2	RP11-103J8.2-001	NA	NA	NA	inter
CUST_10893_PI429285431	2.9150715	A	3.0429564	A	0.915172178787128	0	lncRNA	12434-1_{1..1482}	lnc-NUDT12-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUDT12-3:3	chr5	103222809	103224290	-	lnc-NUDT12-3	lnc-NUDT12-3:3	XLOC_004945	linc-NUDT12-5	NA	NA	NA	inter
CUST_2290_PI429285431	1.2925847	A	1.0740743	A	1.16353160565346	0	lncRNA	2282-1_{1..404}	"transcript_id ""ENST00000505824.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505824.1"" | genecode_v17"	chr5	103966237	103966640	-	ENSG00000251574.2	ENST00000505824.1	RP11-6N13.1	RP11-6N13.1-002	NA	NA	NA	inter
CUST_38541_PI429285431	6.835808	P	6.9817567	P	0.903784863368921	0	lncRNA	39549-3_{6001..6135}	n383242|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jxg.1||2.7885800|-0.1503144	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383242|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jxg.1||2.7885800|-0.1503144	chr17	 77912142	 77912276	-	NA	NA	NA	NA	TBC1D16	NA	chr17:77913819-77922277	inner
CUST_19938_PI429285431	3.0466073	P	2.7095268	A	1.26319774422675	0	lncRNA	21593-1_{1..745}	lnc-CCDC34-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC34-1:2	chr11	 27241234	 27241978	-	lnc-CCDC34-1	lnc-CCDC34-1:2	ENSG00000254560.1	RP11-1L12.3	NA	NA	NA	inter
CUST_34245_PI429285431	0.8867763	A	0.8817179	A	1.00351236966268	0	lncRNA	35751-1_{1..3000}	n341102|BX649128|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3568|NULL|-1.1126900|-0.3616407	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341102|BX649128|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3568|NULL|-1.1126900|-0.3616407	chr11	 94898709	 94901708	-	NA	NA	NA	NA	SESN3	NA	chr11:94906133-94915359	inner
CUST_11721_PI429285431	0.8844596	A	1.8106793	A	0.526235433786554	0	lncRNA	13299-1_{1..316}	lnc-PDCD6IP-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDCD6IP-2:2	chr3	 34476785	 34477100	+	lnc-PDCD6IP-2	lnc-PDCD6IP-2:2	XLOC_002612	linc-ARPP21-1	NA	NA	NA	inter
CUST_47014_PI429285431	3.6933491	P	4.1193223	P	0.7443364545052	0	lncRNA	51109-1_{1..2273}	"gi|210147460|ref|NR_015417.1| Homo sapiens uncharacterized LOC284276 (LOC284276), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|210147460|ref|NR_015417.1| Homo sapiens uncharacterized LOC284276 (LOC284276), non-coding RNA"	NA	NA	NA	NA	NA	NR_015417.1	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20"	NA	Unknown
CUST_24564_PI429285431	1.8927848	A	1.6610386	A	1.17425537715026	0	lncRNA	26112-1_{1..1063}	lnc-CTSZ-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTSZ-3:1	chr20	 57414837	 57415899	-	lnc-CTSZ-3	lnc-CTSZ-3:1	ENSG00000235590.2	GNAS-AS1	GNAS	"hg19_refFlat_GNAS:range=chr20:57415162-574158995'pad=0,hg19_refFlat_GNAS:range=chr20:57415162-574158995'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.60chr20:57414795-57425899"	NA	inter
LNCA_21_P0003591	0.8733989	A	0.87364876	A	0.999826825241945	0	lncRNA	TCONS_00008023	NA	NA	NA	NA	XLOC_003486	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003486), lincRNA [TCONS_00008023]"	chr4:27995193-27995252	hs|4p15.1	Agilent_HUMAN_G3V2	TCONS_00008023	TCONS_00008023	chr4	 27995193	 27995252	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005838	0.87377113	A	0.8736202	A	1.00010462217648	0	lncRNA	ENST00000521456	NA	NA	NA	NA	XLOC_007091	NA	ENST00000521456	THC2744018	NA	"BROAD Institute lincRNA (XLOC_007091), lincRNA [TCONS_00015017]"	chr8:60473994-60473935	hs|8q12.1	Agilent_HUMAN_G3V2	ENST00000521456	ENST00000521456	chr8	 60473935	 60473994	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007611	3.8835099	P	4.7922106	P	0.532664596273221	0	lncRNA	TCONS_00020532	NA	NA	NA	NA	XLOC_009846	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009846), lincRNA [TCONS_00020532]"	chr12:96545822-96545881	hs|12q23.1	Agilent_HUMAN_G3V2	TCONS_00020532	TCONS_00020532	chr12	 96545822	 96545881	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37063_PI429285431	4.995193	P	5.512703	P	0.698576491945138	0	lncRNA	38195-1_{1..1261}	n345512|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1061|NULL|-1.4859800|-0.3998761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345512|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1061|NULL|-1.4859800|-0.3998761	chr2	 19540116	 19541376	+	NA	NA	NA	NA	OSR1	NA	chr2:19551246-19555176	inter
CUST_18985_PI429285431	0.87133825	A	0.8717508	A	0.999714083012715	0	lncRNA	20677-1_{1..383}	lnc-MYC-2:23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYC-2:23	chr8	129082406	129082788	+	lnc-MYC-2	lnc-MYC-2:23	ENSG00000249859	PVT1	NA	NA	NA	inter
CUST_3696_PI429285431	0.87499034	A	0.8742429	A	1.00051822015833	0	lncRNA	3664-1_{1..316}	"transcript_id ""ENST00000453639.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453639.1"" | genecode_v17"	chr10	 57228087	 57228402	+	ENSG00000223800.1	ENST00000453639.1	RP11-598C10.2	RP11-598C10.2-001	NA	NA	NA	inter
CUST_10435_PI429285431	6.765196	P	6.780474	P	0.989465972981191	0	lncRNA	11963-1_{1..2157}	lnc-AC016722.1.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC016722.1.1-1:4	chr2	 47085219	 47087375	+	lnc-AC016722.1.1-1	lnc-AC016722.1.1-1:4	XLOC_001458	linc-TTC7A-2	NA	NA	NA	inter
CUST_35169_PI429285431	0.88969314	A	0.88594586	A	1.00260079277569	0	lncRNA	36570-1_{1..2626}	n342146|AF305821|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4632|NULL|-1.3047100|-0.4861374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342146|AF305821|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4632|NULL|-1.3047100|-0.4861374	chr6	142684211	142686836	-	NA	NA	NA	NA	GPR126	NA	chr6:142674211-142696824	inner
LNCA_21_P0006582	2.7006469	A	2.771409	A	0.952134902326383	0	lncRNA	ENST00000422226	NA	NA	NA	NA	XLOC_008222	NA	ENST00000422226	NA	NA	"BROAD Institute lincRNA (XLOC_008222), lincRNA [TCONS_00017537]"	chrX:119253535-119253476	hs|Xq24	Agilent_HUMAN_G3V2	ENST00000422226	ENST00000422226	chrX	119253476	119253535	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52226_PI429285431	9.071259	P	8.234116	P	1.78650877476318	0	lncRNA	55739-1_{1..688}	hg19_lincRNAsTranscripts_TCONS_l2_00031188 range=chrUn_gl000241:22732-36875 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00031188 range=chrUn_gl000241:22732-36875 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrUn_gl000241	    22732	    23419	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002240	0.87308574	A	0.87610644	A	0.997908400760266	0	lncRNA	TCONS_00003732	NA	NA	NA	NA	XLOC_001527	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001527), lincRNA [TCONS_00003732]"	chr2:71970903-71970962	hs|2p13.2	Agilent_HUMAN_G3V2	TCONS_00003732	TCONS_00003732	chr2	 71970903	 71970962	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51514_PI429285431	6.181703	P	6.4113817	P	0.85282480168714	0	lncRNA	55088-2_{3001..3705}	hg19_lincRNAsTranscripts_TCONS_l2_00010376 range=chr16:89979190-89983349 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010376 range=chr16:89979190-89983349 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 89982190	 89982894	-	NA	NA	NA	NA	TUBB3	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr16:89988417-89993349"	NA	inter
CUST_13577_PI429285431	0.9029294	A	0.91001725	A	0.995099125424198	0	lncRNA	15218-1_{1..823}	lnc-RYK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RYK-1:1	chr3	133793879	133794701	-	lnc-RYK-1	lnc-RYK-1:1	XLOC_003260	linc-SLCO2A1-2	NA	NA	NA	inter
CUST_11470_PI429285431	0.90752786	A	0.9046518	A	1.00199552128789	0	lncRNA	13036-1_{1..435}	lnc-ACCN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACCN1-1:1	chr17	 32522933	 32523367	-	lnc-ACCN1-1	lnc-ACCN1-1:1	XLOC_012441	linc-ACCN1-1	NA	NA	NA	inter
CUST_15404_PI429285431	4.2479057	P	2.8376977	A	2.65775478134041	0	lncRNA	17089-1_{1..1471}	lnc-KIAA0226-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA0226-1:1	chr3	197392371	197393841	-	lnc-KIAA0226-1	lnc-KIAA0226-1:1	XLOC_003407	linc-BDH1-1	KIAA0226	NA	chr3:197398259-197402628	inter
CUST_42165_PI429285431	6.177818	P	6.4815803	P	0.810136941677937	0	lncRNA	44204-1_{1..97}	ENST00000385230 ncrna:miRNA chromosome:GRCh37:15:70371711:70371807:-1 gene:ENSG00000207965 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385230 ncrna:miRNA chromosome:GRCh37:15:70371711:70371807:-1 gene:ENSG00000207965 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 70371711	 70371807	-	ENSG00000207965	ENST00000385230	NA	NA	TLE3	NA	chr15:70361711-70381807	inner
CUST_41940_PI429285431	12.424527	P	13.243255	P	0.566941585231124	0	lncRNA	43696-1_{1..115}	ENST00000459109 ncrna:miRNA supercontig:GRCh37:GL000229.1:17285:17399:1 gene:ENSG00000238643 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459109 ncrna:miRNA supercontig:GRCh37:GL000229.1:17285:17399:1 gene:ENSG00000238643 gene_biotype:miRNA transcript_biotype:miRNA	chrGL000229.1	    17285	    17399	+	ENSG00000238643	ENST00000459109	NA	NA	NA	NA	NA	Unknown
CUST_37547_PI429285431	7.583829	P	7.251247	P	1.25926507326406	0	lncRNA	38651-3_{6001..8516}	n346023|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1573|NULL|-1.3231500|-0.1156631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n346023|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1573|NULL|-1.3231500|-0.1156631	chr21	 44870599	 44873114	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_23937_PI429285431	0.910735	A	0.92573565	A	0.989656210529789	0	lncRNA	25494-1_{1..275}	lnc-DPY19L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DPY19L2-1:1	chr12	 64189261	 64189535	-	lnc-DPY19L2-1	lnc-DPY19L2-1:1	ENSG00000249753.2	RP11-415I12.3	TMEM5	NA	chr12:64179261-64199498	inner
LNCA_21_P0005231	4.548614	P	4.292022	P	1.19465330428681	0	lncRNA	ENST00000436266	NA	NA	NA	NA	XLOC_006083	NA	ENST00000436266	NA	NA	"BROAD Institute lincRNA (XLOC_006083), lincRNA [TCONS_00013006]"	chr7:46383139-46383198	hs|7p12.3	Agilent_HUMAN_G3V2	ENST00000436266	ENST00000436266	chr7	 46383139	 46383198	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5492_PI429285431	1.4618939	A	0.9322859	A	1.4435369134824	0	lncRNA	5424-2_{3001..4147}	"transcript_id ""ENST00000565549.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565549.1"" | genecode_v17"	chr16	 32468933	 32470079	-	ENSG00000261541.1	ENST00000565549.1	RP11-626K17.3	RP11-626K17.3-001	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20"	NA	inter
CUST_16779_PI429285431	10.513227	P	10.181522	P	1.25849981114246	0	lncRNA	18488-1_{1..218}	lnc-NAPB-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAPB-1:7	chr20	 23337688	 23337905	-	lnc-NAPB-1	lnc-NAPB-1:7	XLOC_013693	linc-CD93-1	GZF1	NA	chr20:23345021-23347840	inter
CUST_890_PI429285431	8.47738	P	9.666268	P	0.438640825821634	0	lncRNA	879-1_{1..2036}	"transcript_id ""ENST00000409590.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000409590.1"" | genecode_v17"	chr2	 59444843	 59446878	+	ENSG00000222030.1	ENST00000409590.1	AC007131.1	AC007131.1-001	NA	NA	NA	inter
CUST_42448_PI429285431	7.1949883	P	7.356991	P	0.893783489641756	0	lncRNA	45175-1_{1..140}	ENST00000384250 ncrna:snoRNA chromosome:GRCh37:6:41800592:41800731:1 gene:ENSG00000206977 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384250 ncrna:snoRNA chromosome:GRCh37:6:41800592:41800731:1 gene:ENSG00000206977 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	 41800592	 41800731	+	ENSG00000206977	ENST00000384250	NA	NA	USP49	NA	chr6:41790592-41810731	inner
CUST_27094_PI429285431	2.3774993	A	3.1422195	A	0.588567505842238	0	lncRNA	28627-1_{1..752}	n324205|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327891|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327891|-0.1992900|-0.2611101	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324205|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327891|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327891|-0.1992900|-0.2611101	chr7	 30590840	 30591591	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19000_PI429285431	3.7094696	P	3.9933996	P	0.821350551962616	0	lncRNA	20690-2_{3001..3329}	lnc-LRRC47-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-LRRC47-1:3	chr1	  3665851	  3666179	-	lnc-LRRC47-1	lnc-LRRC47-1:3	ENSG00000227372	TP73-AS1	CCDC27	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40chr1:3668965-3673340"	NA	inter
CUST_37328_PI429285431	7.1109877	P	7.425042	P	0.804378095276363	0	lncRNA	38434-2_{3001..5319}	n345771|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1320|NULL|-1.3172200|-0.2433726	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345771|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1320|NULL|-1.3172200|-0.2433726	chr12	121408936	121411254	-	NA	NA	NA	NA	HNF1A	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-25.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-44.01;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr12:121416549-121422502"	NA	inter
CUST_18826_PI429285431	1.44425	A	1.7766125	A	0.79423481093497	0	lncRNA	20520-1_{1..3000}	lnc-FOXL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FOXL2-1:1	chr3	138662808	138665807	-	lnc-FOXL2-1	lnc-FOXL2-1:1	ENSG00000244578	RP11-548O1.3	FOXL2	NA	chr3:138663066-138665982	inter
CUST_41913_PI429285431	0.87780046	A	0.88557833	A	0.994623297823283	0	lncRNA	43649-1_{1..77}	ENST00000516315 ncrna:miRNA chromosome:GRCh37:22:40924061:40924137:-1 gene:ENSG00000252124 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516315 ncrna:miRNA chromosome:GRCh37:22:40924061:40924137:-1 gene:ENSG00000252124 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 40924061	 40924137	-	ENSG00000252124	ENST00000516315	NA	NA	MKL1	NA	chr22:40914061-40934137	inner
CUST_7519_PI429285431	8.381031	P	8.04144	P	1.26539780638404	0	lncRNA	9159-1_{1..3000}	lnc-MTUS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTUS2-1:1	chr13	 30084302	 30087301	+	lnc-MTUS2-1	lnc-MTUS2-1:1	ENSG00000246099	ENST00000499913	MTUS2	NA	chr13:30074302-30080084	inner
CUST_31983_PI429285431	5.033974	P	5.0590973	P	0.98273660532554	0	lncRNA	33705-1_{1..659}	n338542|BC032899|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|946|NULL|-1.1842500|-0.2161370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338542|BC032899|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|946|NULL|-1.1842500|-0.2161370	chr1	226271404	226272062	+	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40"	NA	inter
CUST_16460_PI429285431	0.8960615	A	1.1193444	A	0.856613963720549	0	lncRNA	18158-1_{1..649}	lnc-SLC25A48-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A48-2:6	chr5	135162155	135162803	+	lnc-SLC25A48-2	lnc-SLC25A48-2:6	XLOC_004565	linc-SLC25A48-1	SLC25A48	NA	chr5:135170365-135172243	inter
CUST_27937_PI429285431	3.812888	P	3.502761	P	1.23981683582943	0	lncRNA	29538-1_{1..1620}	n325181|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000253918|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000253918|-1.2166400|-0.3954008	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325181|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000253918|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000253918|-1.2166400|-0.3954008	chr2	110326394	110328013	-	NA	NA	NA	NA	10-Sep	"hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60chr2:110316394-110347806"	NA	inter
CUST_28550_PI429285431	0.8956668	A	1.241761	A	0.786711075798172	0	lncRNA	30224-1_{1..2222}	n325901|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049934|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049934|-0.8705180|-0.2757961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325901|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000049934|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000049934|-0.8705180|-0.2757961	chr10	103002567	103004788	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42376_PI429285431	0.8944181	A	1.8408749	A	0.51890530846063	0	lncRNA	45056-1_{1..70}	ENST00000363807 ncrna:snoRNA chromosome:GRCh37:15:91298473:91298542:-1 gene:ENSG00000200677 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363807 ncrna:snoRNA chromosome:GRCh37:15:91298473:91298542:-1 gene:ENSG00000200677 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 91298473	 91298542	-	ENSG00000200677	ENST00000363807	NA	NA	BLM	NA	chr15:91288473-91308542	inner
CUST_16310_PI429285431	2.0603158	A	2.072583	A	0.991533072955112	0	lncRNA	18016-1_{1..573}	lnc-SOX1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOX1-4:3	chr13	112555259	112555831	+	lnc-SOX1-4	lnc-SOX1-4:3	XLOC_010503	linc-SOX1-1	NA	NA	NA	inter
CUST_21964_PI429285431	3.8020172	P	4.0912757	P	0.81832254261043	0	lncRNA	23572-1_{1..511}	lnc-FAM153C-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FAM153C-4:3	chr5	177386720	177387230	+	lnc-FAM153C-4	lnc-FAM153C-4:3	ENSG00000249684.1	RP11-423H2.3	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20"	NA	inter
LNCA_21_P0004554	0.8731538	A	0.87409174	A	0.999350080822486	0	lncRNA	TCONS_00010923	NA	NA	NA	NA	XLOC_004800	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004800), lincRNA [TCONS_00010923]"	chr5:42153102-42153043	hs|5p13.1	Agilent_HUMAN_G3V2	TCONS_00010923	TCONS_00010923	chr5	 42153043	 42153102	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25479_PI429285431	0.8862509	A	0.8841376	A	1.00146590132116	0	lncRNA	27009-1_{1..713}	lnc-GPR82-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR82-1:2	chrX	 42558396	 42559108	+	lnc-GPR82-1	lnc-GPR82-1:2	ENSG00000231772.1	RP1-154K9.2	NA	NA	NA	inter
LNCA_21_P0009732	0.8736239	A	0.87354934	A	1.00005168238927	0	lncRNA	TCONS_00027126	NA	NA	NA	NA	XLOC_013167	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013167), lincRNA [TCONS_00027126]"	chr19:56910650-56910709	hs|19q13.43	Agilent_HUMAN_G3V2	TCONS_00027126	TCONS_00027126	chr19	 56910650	 56910709	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42275_PI429285431	0.8730503	A	0.8739084	A	0.999405387256628	0	lncRNA	44886-1_{1..118}	ENST00000517233 ncrna:snoRNA chromosome:GRCh37:1:202496438:202496555:-1 gene:ENSG00000253042 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517233 ncrna:snoRNA chromosome:GRCh37:1:202496438:202496555:-1 gene:ENSG00000253042 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	202496438	202496555	-	ENSG00000253042	ENST00000517233	NA	NA	PPP1R12B	NA	chr1:202486438-202506555	inner
CUST_42906_PI429285431	4.805132	P	4.738824	P	1.0470337886593	0	lncRNA	46004-1_{1..94}	ENST00000516131 ncrna:snoRNA chromosome:GRCh37:22:19237396:19237489:1 gene:ENSG00000251940 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516131 ncrna:snoRNA chromosome:GRCh37:22:19237396:19237489:1 gene:ENSG00000251940 gene_biotype:snoRNA transcript_biotype:snoRNA	chr22	 19237396	 19237489	+	ENSG00000251940	ENST00000516131	NA	NA	CLTCL1	NA	chr22:19227396-19247489	inner
CUST_44706_PI429285431	3.225154	P	4.7097473	P	0.357349258550607	0	lncRNA	49262-1_{1..3000}	"gi|393715057|ref|NR_072994.1| Homo sapiens protein phosphatase 1, regulatory subunit 10 (PPP1R10), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393715057|ref|NR_072994.1| Homo sapiens protein phosphatase 1, regulatory subunit 10 (PPP1R10), transcript variant 2, non-coding RNA"	NT_167249.1	  1900456	  1903455	-	5514	NR_072994.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014796	0.8751558	A	2.0738173	A	0.435679307655333	0	lncRNA	ENST00000528696	XR_132597	XR_132597	NA	NA	LOC100652755	NA	ENST00000528696	THC2542372	NA	"PREDICTED: Homo sapiens hypothetical LOC100652755 (LOC100652755), miscRNA [XR_132597]"	chr15:100513984-100514043	hs|15q26.3	Agilent_HUMAN_G3V2	ENST00000528696	ENST00000528696	chr15	100513984	100514043	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11710_PI429285431	0.8945476	A	0.90485203	A	0.992882960334806	0	lncRNA	13288-1_{1..409}	lnc-CMC1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMC1-1:2	chr3	 27901578	 27901986	+	lnc-CMC1-1	lnc-CMC1-1:2	XLOC_002603	linc-CMC1-1	NA	NA	NA	inter
CUST_44187_PI429285431	0.8798723	A	0.87586206	A	1.00278355346013	0	lncRNA	48843-1_{1..2555}	"gi|333944057|ref|NR_038286.1| Homo sapiens PSMD6 antisense RNA 2 (PSMD6-AS2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|333944057|ref|NR_038286.1| Homo sapiens PSMD6 antisense RNA 2 (PSMD6-AS2), non-coding RNA"	Chr3	 63989698	 63992252	+	100507062	NR_038286.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014157	5.873014	P	6.4322553	P	0.678658970380662	0	lncRNA	XR_108638	XR_108638	XR_108638	NA	NA	LOC100507672	uncharacterized LOC100507672	NA	THC2616237	NA	"PREDICTED: Homo sapiens hypothetical LOC100507672 (LOC100507672), miscRNA [XR_108638]"	chr6:35324561-35324620	hs|6p21.31	Agilent_HUMAN_G3V2	XR_108638	XR_108638	chr6	 35324561	 35324620	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28796_PI429285431	0.88816726	A	1.9199785	A	0.489095725069852	0	lncRNA	30504-1_{1..423}	n326203|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092017|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092017|-0.9917700|-0.3370266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326203|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092017|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092017|-0.9917700|-0.3370266	chr1	223021224	223021646	+	NA	NA	NA	NA	DISP1	NA	chr1:223011224-223037666	inner
CUST_33162_PI429285431	3.9334068	P	4.641164	P	0.612271230411649	0	lncRNA	34756-1_{1..2210}	n339853|BC038429|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2301|NULL|-1.1236000|-0.2625180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n339853|BC038429|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2301|NULL|-1.1236000|-0.2625180	chr18	 43063307	 43065516	+	NA	NA	NA	NA	SLC14A2	NA	chr18:43053307-43119820	inner
CUST_22350_PI429285431	1.9361691	A	3.6081023	A	0.313832528630697	0	lncRNA	23944-1_{1..527}	lnc-GNG11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNG11-1:1	chr7	 93522554	 93523080	+	lnc-GNG11-1	lnc-GNG11-1:1	ENSG00000234695.1	AC002076.10	TFPI2	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr7:93515745-93520065"	NA	inter
CUST_39399_PI429285431	2.693864	A	2.2722998	A	1.33937895037091	0	lncRNA	40361-2_{3001..6000}	n386585|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010pbf.1||1.3938300|-0.2144233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386585|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010pbf.1||1.3938300|-0.2144233	chr1	149282475	149285474	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-14.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-55.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90"	NA	inter
LNCA_21_P0007121	0.8717273	A	0.87506104	A	0.997691895297739	0	lncRNA	TCONS_00019053	NA	NA	NA	NA	XLOC_008993	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008993), lincRNA [TCONS_00019053]"	chr10:131178923-131177194	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_00019053	TCONS_00019053	chr10	131177194	131178923	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33240_PI429285431	6.0324945	P	6.710065	P	0.625217254963617	0	lncRNA	34827-1_{1..2062}	n339942|BC037918|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2391|NULL|-0.5320670|-0.2532281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n339942|BC037918|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2391|NULL|-0.5320670|-0.2532281	chr10	  3360886	  3362947	+	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00"	NA	inter
CUST_6738_PI429285431	0.8805214	A	0.88312924	A	0.998194015812208	0	lncRNA	6686-1_{1..823}	"transcript_id ""ENST00000424850.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424850.1"" | genecode_v17"	chr20	 56174751	 56175573	-	ENSG00000227297.1	ENST00000424850.1	RP4-718J7.4	RP4-718J7.4-001	ZBP1	NA	chr20:56178902-56186256	inter
CUST_51792_PI429285431	2.811532	A	2.1968951	A	1.53117258041404	0	lncRNA	55341-1_{1..2281}	hg19_lincRNAsTranscripts_TCONS_l2_00012350 range=chr19:16144573-16148127 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012350 range=chr19:16144573-16148127 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 16144573	 16146853	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49752_PI429285431	5.6350617	P	5.2391744	P	1.31575173753157	0	lncRNA	53521-1_{1..611}	hg19_lincRNAsTranscripts_TCONS_l2_00026547 range=chr7:45766101-45768545 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026547 range=chr7:45766101-45768545 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 45766101	 45766711	-	NA	NA	NA	NA	ADCY1	NA	chr7:45756101-45762715	inter
CUST_52035_PI429285431	0.915441	A	0.94608504	A	0.978983167732346	0	lncRNA	55565-1_{1..480}	hg19_lincRNAsTranscripts_TCONS_l2_00017171 range=chr21:23774315-23847245 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017171 range=chr21:23774315-23847245 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 23774315	 23774794	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49410_PI429285431	0.92950666	A	1.0021238	A	0.950911419032431	0	lncRNA	53217-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00023261 range=chr5:175570100-175626411 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023261 range=chr5:175570100-175626411 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175570100	175573099	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30"	NA	inter
CUST_16713_PI429285431	0.90891844	A	0.9110424	A	0.998528866294033	0	lncRNA	18419-1_{1..617}	lnc-CDH6-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH6-2:7	chr5	 29169667	 29170283	+	lnc-CDH6-2	lnc-CDH6-2:7	XLOC_004325	linc-CDH6-3	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70"	NA	inter
CUST_49823_PI429285431	2.4973261	A	2.1471374	A	1.27472734676668	0	lncRNA	53581-1_{1..960}	hg19_lincRNAsTranscripts_TCONS_l2_00025956 range=chr7:64551049-64569259 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025956 range=chr7:64551049-64569259 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 64551049	 64552008	+	NA	NA	NA	NA	NA	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50"	NA	inter
LNCA_21_P0004943	0.9079043	A	0.9325128	A	0.983087339932508	0	lncRNA	TCONS_00011955	NA	NA	NA	NA	XLOC_005466	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005466), lincRNA [TCONS_00011955]"	chr6:133421132-133421191	hs|6q23.2	Agilent_HUMAN_G3V2	TCONS_00011955	TCONS_00011955	chr6	133421132	133421191	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40775_PI429285431	5.1671515	P	4.40407	P	1.69711167307982	0	lncRNA	41493-2_{3001..6000}	n410504|NR_037646|lncRNA|Homosapiens||RefGeneNoncode|NR_037646||10.7920000|-0.2856322	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410504|NR_037646|lncRNA|Homosapiens||RefGeneNoncode|NR_037646||10.7920000|-0.2856322	chr11	 57482994	 57485993	+	NA	NA	NA	NA	CTNND1	NA	chr11:57529234-57586652	inner
CUST_34450_PI429285431	0.9011887	A	1.5062706	A	0.657434057330832	0	lncRNA	35926-1_{1..1432}	n341325|BC038554|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3794|NULL|-1.1273300|-0.2826858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341325|BC038554|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3794|NULL|-1.1273300|-0.2826858	chr7	133485245	133486676	-	NA	NA	NA	NA	EXOC4	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90chr7:133475245-133519641"	NA	inner
CUST_15035_PI429285431	0.917707	A	0.995926	A	0.947226271464192	0	lncRNA	16698-1_{1..256}	lnc-TMEM206-5:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM206-5:9	chr1	212399570	212399825	-	lnc-TMEM206-5	lnc-TMEM206-5:9	XLOC_001191	linc-INTS7	NA	NA	NA	inter
LNCA_21_P0003279	5.8739967	P	4.742337	P	2.19110663811582	0	lncRNA	TCONS_00007119	NA	NA	NA	NA	XLOC_003052	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003052), lincRNA [TCONS_00007119]"	chr3:13693346-13692306	hs|3p25.1	Agilent_HUMAN_G3V2	TCONS_00007119	TCONS_00007119	chr3	 13692306	 13693346	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31314_PI429285431	0.9185611	A	0.9176733	A	1.0006155654496	0	lncRNA	33097-1_{1..2546}	n337780|AK090573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|162|NULL|-0.6375070|-0.3743477	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337780|AK090573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|162|NULL|-0.6375070|-0.3743477	chrX	 79927171	 79929716	-	NA	NA	NA	NA	BRWD3	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30chrX:79924987-79939717"	NA	inner
CUST_6566_PI429285431	1.8632941	A	3.0438685	A	0.441175811785508	0	lncRNA	6515-1_{1..1182}	"transcript_id ""ENST00000601315.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601315.1"" | genecode_v17"	chr19	 52102542	 52103723	+	ENSG00000267808.1	ENST00000601315.1	AC018755.17	AC018755.17-001	ZNF175	NA	chr19:52092542-52092991	inter
CUST_36656_PI429285431	10.965896	P	10.84804	P	1.08512105707769	0	lncRNA	37847-1_{1..858}	n345152|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_701|NULL|-1.3346400|-0.3961642	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345152|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_701|NULL|-1.3346400|-0.3961642	chr11	110069278	110070135	-	NA	NA	NA	NA	NA	NA	NA	inner
LNCA_21_P0014395	5.457301	P	4.343983	P	2.16342633858739	0	lncRNA	XR_109582	XR_109582	XR_109582	NA	Hs.569961	LOC100505594	uncharacterized LOC100505594	NA	THC2629418	NA	"PREDICTED: Homo sapiens hypothetical LOC100505594 (LOC100505594), miscRNA [XR_109582]"	chr19:21753641-21753582	hs|19p12	Agilent_HUMAN_G3V2	XR_109582	XR_109582	chr19	 21753582	 21753641	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21550_PI429285431	6.9139943	P	6.7839704	P	1.09431182971849	0	lncRNA	23166-2_{3001..4749}	lnc-METTL14-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-METTL14-3:1	chr4	119558847	119560595	+	lnc-METTL14-3	lnc-METTL14-3:1	ENSG00000260404.1	RP11-384K6.6	METTL14	NA	chr4:119557825-119566134	inter
CUST_38779_PI429285431	1.8921125	A	1.0272193	A	1.82120484182504	0	lncRNA	39771-1_{1..1213}	n384425|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003gnc.2||-0.9473610|-0.3136826	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n384425|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003gnc.2||-0.9473610|-0.3136826	chr4	 14113613	 14114825	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34197_PI429285431	9.795416	P	10.332166	P	0.68932201654189	0	lncRNA	35712-1_{1..1571}	n341052|BC071866|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3518|NULL|4.6586600|-0.0408064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341052|BC071866|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3518|NULL|4.6586600|-0.0408064	chr11	 66624588	 66626158	+	NA	NA	NA	NA	PC	NA	chr11:66615997-66637946	inner
CUST_13310_PI429285431	4.7914453	P	4.816121	P	0.983041549291525	0	lncRNA	14945-1_{1..309}	lnc-CCL23-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCL23-1:1	chr17	 34367780	 34368088	-	lnc-CCL23-1	lnc-CCL23-1:1	XLOC_012449	linc-CCL23	NA	NA	NA	inter
CUST_24826_PI429285431	3.8533564	P	4.419601	P	0.675372527335498	0	lncRNA	26366-1_{1..573}	lnc-KIAA0895-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-KIAA0895-2:1	chr7	 36639349	 36639921	-	lnc-KIAA0895-2	lnc-KIAA0895-2:1	ENSG00000230539.1	AOAH-IT1	AOAH	NA	chr7:36629349-36649726	inner
CUST_14033_PI429285431	9.003068	P	9.264556	P	0.834227051266424	0	lncRNA	15679-1_{1..1173}	lnc-TM2D2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TM2D2-2:1	chr8	 38724135	 38725307	-	lnc-TM2D2-2	lnc-TM2D2-2:1	XLOC_007059	linc-C8orf86-3	NA	NA	NA	inter
CUST_11566_PI429285431	2.6597981	A	2.1995375	A	1.3757903104165	0	lncRNA	13143-1_{1..494}	lnc-SLC6A9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC6A9-2:1	chr1	 44412153	 44412646	-	lnc-SLC6A9-2	lnc-SLC6A9-2:1	XLOC_000812	linc-HYI-2	IPO13	NA	chr1:44412478-44422223	inter
CUST_30737_PI429285431	1.9538016	A	1.2645473	A	1.61244986016627	0	lncRNA	32520-1_{1..492}	n336302|Y18461|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326084|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326084|1.1883000|-0.1773462	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336302|Y18461|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326084|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326084|1.1883000|-0.1773462	chr15	 79215358	 79215849	-	NA	NA	NA	NA	CTSH	NA	chr15:79214092-79234794	inner
CUST_8628_PI429285431	2.8173165	A	0.8842355	A	3.81869845106548	0	lncRNA	10180-1_{1..477}	lnc-OTUB2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OTUB2-1:6	chr14	 94465683	 94466159	+	lnc-OTUB2-1	lnc-OTUB2-1:6	ENSG00000175699	C14orf48	NA	NA	NA	inter
CUST_39904_PI429285431	6.9941244	P	6.405263	P	1.50405924917591	0	lncRNA	40788-1_{1..2562}	n406636|NR_024165|lncRNA|Homosapiens||RefGeneNoncode|NR_024165||3.5608300|-0.2545700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406636|NR_024165|lncRNA|Homosapiens||RefGeneNoncode|NR_024165||3.5608300|-0.2545700	chr6	 28292514	 28295075	-	NA	NA	NA	NA	ZNF323	NA	chr6:28292514-28314152	inner
LNCA_21_P0013583	0.8785937	A	0.88775486	A	0.993670086622334	0	lncRNA	TCONS_l2_00028810	NA	NA	NA	NA	XLOC_l2_014830	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014830), lincRNA [TCONS_l2_00028810]"	chr9:69087673-69087732	hs|9q21.11	Agilent_HUMAN_G3V2	TCONS_l2_00028810	TCONS_l2_00028810	chr9	 69087673	 69087732	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33621_PI429285431	2.4817622	A	1.9209461	A	1.47510341401044	0	lncRNA	35186-1_{1..426}	n340380|AF075114|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2841|NULL|-1.2337600|-0.2820579	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340380|AF075114|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2841|NULL|-1.2337600|-0.2820579	chr5	 10364232	 10364657	-	NA	NA	NA	NA	6-Mar	NA	chr5:10354232-10374649	inner
CUST_43855_PI429285431	1.2512656	A	0.8864567	A	1.28771104745821	0	lncRNA	48576-2_{3001..4115}	"gi|380254481|ref|NR_046438.1| Homo sapiens MEIS1 antisense RNA 3 (MEIS1-AS3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|380254481|ref|NR_046438.1| Homo sapiens MEIS1 antisense RNA 3 (MEIS1-AS3), non-coding RNA"	Chr2	 66653474	 66654588	-	730198	NR_046438.1	NA	NA	NA	NA	NA	inter
CUST_19332_PI429285431	0.8883741	A	0.97546786	A	0.941417280333881	0	lncRNA	20998-1_{1..698}	lnc-CPPED1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPPED1-2:1	chr16	 12704595	 12705292	-	lnc-CPPED1-2	lnc-CPPED1-2:1	ENSG00000259899.1	CTD-3037G24.3	NA	NA	NA	inter
CUST_38897_PI429285431	1.6929398	A	2.8310664	A	0.454349186228303	0	lncRNA	39884-1_{1..1235}	n384867|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003obm.1||4.4323800|-0.1040019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384867|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003obm.1||4.4323800|-0.1040019	chr6	 32520489	 32521723	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27517_PI429285431	3.2036731	A	3.1582377	A	1.0319945844376	0	lncRNA	29088-1_{1..517}	n324696|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322346|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322346|-0.8973050|-0.2640639	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324696|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322346|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322346|-0.8973050|-0.2640639	chr22	 25629302	 25629818	+	NA	NA	NA	NA	CRYBB2	NA	chr22:25619302-25627836	inter
CUST_22823_PI429285431	2.2306156	A	1.8924141	A	1.26417965302919	0	lncRNA	24403-1_{1..475}	lnc-RPS6KA6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RPS6KA6-1:1	chrX	 83757350	 83757824	-	lnc-RPS6KA6-1	lnc-RPS6KA6-1:1	ENSG00000259640.1	RP6-33F8.1	HDX	NA	chrX:83747350-83757487	inner
CUST_29597_PI429285431	3.045549	A	2.0254629	A	2.02803998933877	0	lncRNA	31358-1_{1..329}	n333110|AF329943|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077634|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077634|1.2096300|-0.1040936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333110|AF329943|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077634|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077634|1.2096300|-0.1040936	chr10	 17201152	 17201480	-	NA	NA	NA	NA	TRDMT1	NA	chr10:17191152-17226669	inner
LNCA_19_P00317168	0.8731435	A	4.380139	P	0.087960797821415	0	lncRNA	THC2530593	NA	NA	NA	NA	XLOC_l2_002160	NA	NA	THC2530593	NA	"BROAD Institute lincRNA (XLOC_l2_002160), lincRNA [TCONS_l2_00003829]"	chr10:131862110-131862051	hs|10q26.3	Agilent_HUMAN_G3V2	THC2530593	THC2530593	chr10	131862051	131862110	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35305_PI429285431	0.8939425	A	0.9027706	A	0.993899511382457	0	lncRNA	36708-1_{1..1734}	n342327|BC020945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4819|NULL|-0.8582420|-0.2075361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342327|BC020945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4819|NULL|-0.8582420|-0.2075361	chr1	165446080	165447813	-	NA	NA	NA	NA	LRRC52	"hg19_refFlat_RPS2:range=chr16:2012099-20146265'pad=0,hg19_refFlat_RPS2:range=chr16:2012099-20146265'pad=0 3'pad=0 strand=- repeatMasking=none,-96.80chr1:165513478-165533185"	NA	inter
CUST_1252_PI429285431	0.9092961	A	0.8957227	A	1.00945276172423	0	lncRNA	1244-1_{1..613}	"transcript_id ""ENST00000438659.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438659.1"" | genecode_v17"	chr2	220768772	220769384	-	ENSG00000228909.1	ENST00000438659.1	AC008281.1	AC008281.1-001	NA	NA	NA	inter
CUST_38118_PI429285431	1.6319096	A	0.875304	A	1.68951083186467	0	lncRNA	39192-1_{1..1280}	n381220|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ejr.3||-0.5811950|-0.2711138	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381220|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ejr.3||-0.5811950|-0.2711138	chr1	143717588	143718867	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM91A1:range=chr8:124780943-1248249445'pad=0,hg19_refFlat_FAM91A1:range=chr8:124780943-1248249445'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00"	NA	inter
CUST_4504_PI429285431	0.9084669	A	0.8950762	A	1.00932493474965	0	lncRNA	4453-1_{1..1935}	"transcript_id ""ENST00000540882.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000540882.1"" | genecode_v17"	chr12	128399987	128401921	+	ENSG00000256193.1	ENST00000540882.1	LINC00507	LINC00507-003	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00"	NA	inter
CUST_25696_PI429285431	0.92513335	A	1.6777848	A	0.593511771845346	0	lncRNA	27224-1_{1..372}	lnc-KIAA0195-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0195-1:1	chr17	 73390896	 73391267	+	lnc-KIAA0195-1	lnc-KIAA0195-1:1	ENSG00000265342.1	RP11-16C1.1	GRB2	NA	chr17:73380896-73401044	inner
CUST_19896_PI429285431	6.673685	P	6.6656036	P	1.00561731791965	0	lncRNA	21551-1_{1..725}	lnc-CTD-2517M22.14.1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2517M22.14.1-2:4	chr8	145742986	145743710	-	lnc-CTD-2517M22.14.1-2	lnc-CTD-2517M22.14.1-2:4	ENSG00000160957.7	RECQL4	C8orf82	NA	chr8:145751603-145753012	inner
CUST_40370_PI429285431	8.524612	P	9.064518	P	0.687815722817645	0	lncRNA	41168-2_{3001..4505}	n409147|NR_033265|lncRNA|Homosapiens||RefGeneNoncode|NR_033265||1.5866500|-0.1789293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409147|NR_033265|lncRNA|Homosapiens||RefGeneNoncode|NR_033265||1.5866500|-0.1789293	chr17	 80350085	 80351589	-	NA	NA	NA	NA	C17orf101	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.81;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-55.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90chr17:80347086-80376513"	NA	inner
CUST_45421_PI429285431	3.2564352	P	1.9432867	A	2.48483232005159	0	lncRNA	49844-2_{3001..3203}	"gi|224493710|ref|NR_027125.1| Homo sapiens RNA binding motif protein 18 (RBM18), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224493710|ref|NR_027125.1| Homo sapiens RNA binding motif protein 18 (RBM18), transcript variant 2, non-coding RNA"	Chr9	125004834	125005036	-	92400	NR_027125.1	NA	NA	NA	NA	NA	inter
CUST_19679_PI429285431	5.320902	P	5.494532	P	0.88660905374881	0	lncRNA	21336-1_{1..574}	lnc-RIC8A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RIC8A-1:1	chr11	   205345	   205918	+	lnc-RIC8A-1	lnc-RIC8A-1:1	ENSG00000254559.1	RP11-304M2.5	RIC8A	"hg19_refFlat_BET1L:range=chr11:205302-2073215'pad=0,hg19_refFlat_BET1L:range=chr11:205302-2073215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr11:208530-215113"	NA	inner
CUST_46034_PI429285431	1.0222416	A	0.98333657	A	1.02733380963013	0	lncRNA	50313-2_{3001..3106}	"gi|226246614|ref|NR_027450.1| Homo sapiens family with sequence similarity 186, member B (FAM186B), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|226246614|ref|NR_027450.1| Homo sapiens family with sequence similarity 186, member B (FAM186B), transcript variant 2, non-coding RNA"	Chr12	 49979658	 49979763	-	84070	NR_027450.1	NA	NA	NA	NA	NA	inter
CUST_9439_PI429285431	0.88367593	A	2.1840541	A	0.406019755296995	0	lncRNA	10945-1_{1..379}	lnc-CTAGE5-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTAGE5-1:8	chr14	 39954221	 39954599	+	lnc-CTAGE5-1	lnc-CTAGE5-1:8	XLOC_010811	linc-LRFN5-3	NA	NA	NA	inter
LNCA_21_P0003908	3.0793076	P	2.8740861	A	1.15286333474122	0	lncRNA	TCONS_00009166	NA	NA	NA	NA	XLOC_004165	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004165), lincRNA [TCONS_00009166]"	chr4:174291218-174291159	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_00009166	TCONS_00009166	chr4	174291159	174291218	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7898_PI429285431	1.5488772	A	2.1078932	A	0.678764962153944	0	lncRNA	9513-1_{1..1038}	lnc-AP4B1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AP4B1-1:1	chr1	114471831	114472868	-	lnc-AP4B1-1	lnc-AP4B1-1:1	ENSG00000235527	RP5-1073O3.7	HIPK1	NA	chr1:114471996-114482114	inner
CUST_5541_PI429285431	2.2823877	A	3.0772877	A	0.576383123848561	0	lncRNA	5471-1_{1..456}	"transcript_id ""ENST00000569751.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569751.1"" | genecode_v17"	chr16	 51388367	 51388822	-	ENSG00000260850.1	ENST00000569751.1	RP11-437L7.1	RP11-437L7.1-001	NA	NA	NA	inter
CUST_20704_PI429285431	0.8698108	A	1.015749	A	0.903791441180121	0	lncRNA	22340-1_{1..597}	lnc-NAV3-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAV3-1:5	chr12	 77784251	 77784847	+	lnc-NAV3-1	lnc-NAV3-1:5	ENSG00000257835.1	RP1-97G4.1	NA	NA	NA	inter
CUST_6650_PI429285431	1.3393623	A	1.7346643	A	0.760330199699064	0	lncRNA	6596-1_{1..601}	"transcript_id ""ENST00000432244.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000432244.1"" | genecode_v17"	chr20	 12930986	 12931586	+	ENSG00000234265.1	ENST00000432244.1	RP11-157E14.1	RP11-157E14.1-001	NA	NA	NA	inter
CUST_8128_PI429285431	2.1865492	A	1.797285	A	1.3097252504339	0	lncRNA	9732-1_{1..2039}	lnc-ZNF667-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF667-2:1	chr19	 57078442	 57080480	-	lnc-ZNF667-2	lnc-ZNF667-2:1	ENSG00000245443	AC005498.1	ZNF470	NA	chr19:57078890-57088774	inter
CUST_44736_PI429285431	2.0341713	A	1.6916344	A	1.26798431551738	0	lncRNA	49288-2_{3001..4004}	"gi|378548214|ref|NR_046379.1| Homo sapiens glutamate receptor, metabotropic 4 (GRM4), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378548214|ref|NR_046379.1| Homo sapiens glutamate receptor, metabotropic 4 (GRM4), transcript variant 8, non-coding RNA"	Chr6	 33992623	 33993626	-	2914	NR_046379.1	NA	NA	NA	NA	NA	inter
CUST_10207_PI429285431	0.8939429	A	0.8957371	A	0.998757128334192	0	lncRNA	11734-1_{1..985}	lnc-EXOC2-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXOC2-9:1	chr6	  1131056	  1132040	-	lnc-EXOC2-9	lnc-EXOC2-9:1	XLOC_005573	linc-HUS1B-4	NA	NA	NA	inter
CUST_2674_PI429285431	10.18532	P	10.567846	P	0.767093318301215	0	lncRNA	2660-1_{1..554}	"transcript_id ""ENST00000453579.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453579.1"" | genecode_v17"	chr6	155701645	155702198	-	ENSG00000232529.1	ENST00000453579.1	RP1-257I9.2	RP1-257I9.2-001	NA	NA	NA	inter
LNCA_21_P0002746	9.860157	P	8.120383	P	3.33982844838828	0	lncRNA	ENST00000487097	NA	NA	NA	NA	XLOC_002685	NA	ENST00000487097	NA	NA	"BROAD Institute lincRNA (XLOC_002685), lincRNA [TCONS_00005531]"	chr3:64440446-64440505	hs|3p14.1	Agilent_HUMAN_G3V2	ENST00000487097	ENST00000487097	chr3	 64440446	 64440505	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005395	7.3584604	P	6.8200517	P	1.45236966234731	0	lncRNA	TCONS_00013502	NA	NA	NA	NA	XLOC_006151	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006151), lincRNA [TCONS_00013502]"	chr7:76316588-76318463	hs|7q11.23	Agilent_HUMAN_G3V2	TCONS_00013502	TCONS_00013502	chr7	 76316588	 76318463	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25919_PI429285431	1.8654066	A	1.9910998	A	0.916563538112849	0	lncRNA	27438-1_{1..674}	lnc-ZNF454-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF454-1:1	chr5	178416748	178417421	+	lnc-ZNF454-1	lnc-ZNF454-1:1	ENSG00000254035.1	RP11-281O15.4	GRM6	NA	chr5:178406748-178422124	inner
CUST_6996_PI429285431	3.303709	P	2.789391	A	1.42831877616212	0	lncRNA	6944-1_{1..572}	"transcript_id ""ENST00000428765.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428765.1"" | genecode_v17"	chr22	 42834029	 42834600	+	ENSG00000230107.1	ENST00000428765.1	CTA-126B4.7	CTA-126B4.7-001	NFAM1	NA	chr22:42824029-42828401	inter
CUST_38801_PI429285431	0.892578	A	0.89948696	A	0.995222522479379	0	lncRNA	39795-1_{1..3000}	n384517|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003iij.1||1.9397000|-0.3509524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384517|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003iij.1||1.9397000|-0.3509524	chr4	141372563	141375562	-	NA	NA	NA	NA	LOC152586	NA	chr4:141364529-141419501	inter
CUST_34773_PI429285431	1.6546311	A	2.034283	A	0.768623025119965	0	lncRNA	36212-1_{1..1751}	n341682|AK093248|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4153|NULL|-1.1947100|-0.2892711	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341682|AK093248|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4153|NULL|-1.1947100|-0.2892711	chr9	 35001909	 35003659	+	NA	NA	NA	NA	DNAJB5	NA	chr9:34991909-34998430	inter
LNCA_21_P0007549	0.8919671	A	0.90904367	A	0.988233200343641	0	lncRNA	TCONS_00020398	NA	NA	NA	NA	XLOC_009727	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009727), lincRNA [TCONS_00020398]"	chr12:47652010-47652069	hs|12q13.11	Agilent_HUMAN_G3V2	TCONS_00020398	TCONS_00020398	chr12	 47652010	 47652069	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20281_PI429285431	8.974867	P	9.335151	P	0.779011213248606	0	lncRNA	21924-1_{1..287}	lnc-PPARA-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPARA-3:3	chr22	 46452942	 46453228	+	lnc-PPARA-3	lnc-PPARA-3:3	ENSG00000241990.1	RP6-109B7.3	C22orf26	NA	chr22:46446339-46450024	inter
CUST_9408_PI429285431	0.9045214	A	0.9074218	A	0.997991615426222	0	lncRNA	10911-1_{1..1700}	lnc-ACSL1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACSL1-2:5	chr4	185820461	185822160	-	lnc-ACSL1-2	lnc-ACSL1-2:5	XLOC_004209	linc-ACSL1-2	NA	NA	NA	inter
CUST_26559_PI429285431	5.1484866	P	4.787101	P	1.28465912365401	0	lncRNA	28064-1_{1..2545}	lnc-SCCPDH-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SCCPDH-1:11	chr1	246953748	246956292	+	lnc-SCCPDH-1	lnc-SCCPDH-1:11	ENSG00000227953.2	RP11-439E19.3	LOC100130097	NA	chr1:246943748-246948062	inter
CUST_25159_PI429285431	3.6502483	P	3.3220668	P	1.25542992223263	0	lncRNA	26696-2_{3001..4861}	lnc-DYNLT3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DYNLT3-1:1	chrX	 36460611	 36462471	-	lnc-DYNLT3-1	lnc-DYNLT3-1:1	ENSG00000226484.1	RP11-87M18.2	NA	"hg19_refFlat_CXorf30:range=chrX:36303818-364031215'pad=0,hg19_refFlat_CXorf30:range=chrX:36303818-364031215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_33704_PI429285431	1.337017	A	1.5361642	A	0.871065311712409	0	lncRNA	35264-2_{3001..3287}	n340482|AK128092|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2943|NULL|0.5680120|-0.2581361	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340482|AK128092|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2943|NULL|0.5680120|-0.2581361	chr17	  6679149	  6679435	-	NA	NA	NA	NA	FBXO39	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_XAF1:range=chr17:6659398-66764885'pad=0,hg19_refFlat_XAF1:range=chr17:6659398-66764885'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr17:6679552-6689435"	NA	inter
CUST_10234_PI429285431	0.89605784	A	0.89816266	A	0.998542113701654	0	lncRNA	11758-1_{1..557}	lnc-MOCS3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MOCS3-2:1	chr20	 49617047	 49617603	+	lnc-MOCS3-2	lnc-MOCS3-2:1	XLOC_013563	linc-TSHZ2-5	KCNG1	NA	chr20:49620193-49627367	inter
CUST_49141_PI429285431	2.3403409	A	2.5206342	A	0.88252356095166	0	lncRNA	52968-1_{1..1072}	hg19_lincRNAsTranscripts_TCONS_l2_00021243 range=chr4:110351152-110354655 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021243 range=chr4:110351152-110354655 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	110351152	110352223	-	NA	NA	NA	NA	SEC24B	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50chr4:110354971-110364655"	NA	inter
CUST_37342_PI429285431	0.8987828	A	0.9127526	A	0.990363603041764	0	lncRNA	38447-1_{1..3000}	n345786|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1335|NULL|-1.6169500|-0.3624170	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345786|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1335|NULL|-1.6169500|-0.3624170	chr10	 54206912	 54209911	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10"	NA	inter
CUST_1250_PI429285431	1.4091735	A	1.6907177	A	0.822709951747283	0	lncRNA	1242-1_{1..542}	"transcript_id ""ENST00000597288.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597288.1"" | genecode_v17"	chr2	220509812	220510353	+	ENSG00000267919.1	ENST00000597288.1	RP11-256I23.3	RP11-256I23.3-001	SLC4A3	NA	chr2:220499812-220506702	inter
CUST_30531_PI429285431	8.451872	P	8.807207	P	0.78168811070825	0	lncRNA	32311-1_{1..270}	n335698|CR619601|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000298796|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000298796|-0.8502660|-0.1398763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335698|CR619601|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000298796|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000298796|-0.8502660|-0.1398763	chr3	 47542930	 47543199	-	NA	NA	NA	NA	C3orf75	NA	chr3:47537130-47553200	inner
CUST_999_PI429285431	9.279741	P	9.410812	P	0.913153309481587	0	lncRNA	988-1_{1..415}	"transcript_id ""ENST00000438148.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438148.1"" | genecode_v17"	chr2	105760600	105761014	+	ENSG00000226508.1	ENST00000438148.1	AC104655.3	AC104655.3-003	NA	NA	NA	inter
CUST_22947_PI429285431	0.91469	A	0.90149075	A	1.00919100316161	0	lncRNA	24523-1_{1..588}	lnc-DSC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DSC1-1:1	chr18	 29006796	 29007383	-	lnc-DSC1-1	lnc-DSC1-1:1	ENSG00000266729.1	RP11-534N16.1	NA	"hg19_refFlat_DSG1:range=chr18:28898264-289353095'pad=0,hg19_refFlat_DSG1:range=chr18:28898264-289353095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60"	NA	inter
CUST_16369_PI429285431	0.89445746	A	1.4581486	A	0.676568943580546	0	lncRNA	18066-1_{1..319}	lnc-RORB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RORB-2:1	chr9	 76553829	 76554147	+	lnc-RORB-2	lnc-RORB-2:1	XLOC_007407	linc-RORB-2	NA	NA	NA	inter
CUST_34463_PI429285431	0.91074055	A	0.8977266	A	1.00906139081892	0	lncRNA	35936-1_{1..3000}	n341338|BX648938|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3807|NULL|-1.0035600|-0.3113025	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341338|BX648938|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3807|NULL|-1.0035600|-0.3113025	chr7	139639477	139642476	+	NA	NA	NA	NA	TBXAS1	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50chr7:139629477-139656962"	NA	inter
CUST_46611_PI429285431	1.6033221	A	0.882938	A	1.64762063509246	0	lncRNA	50789-2_{3001..3695}	"gi|384475542|ref|NR_047581.1| Homo sapiens polymerase (RNA) III (DNA directed) polypeptide E (80kD) (POLR3E), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384475542|ref|NR_047581.1| Homo sapiens polymerase (RNA) III (DNA directed) polypeptide E (80kD) (POLR3E), transcript variant 6, non-coding RNA"	Chr16	 22311696	 22312390	+	55718	NR_047581.1	NA	NA	NA	NA	NA	inter
CUST_33690_PI429285431	0.88021266	A	1.0845182	A	0.8679563886943	0	lncRNA	35251-1_{1..2432}	n340465|AK095157|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2926|NULL|-0.6691230|-0.2937640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340465|AK095157|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2926|NULL|-0.6691230|-0.2937640	chr5	 53939385	 53941816	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45200_PI429285431	0.8866164	A	0.88914174	A	0.998251098812165	0	lncRNA	49666-1_{1..3000}	"gi|225543100|ref|NR_027378.1| Homo sapiens uncharacterized LOC643763 (UG0898H09), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225543100|ref|NR_027378.1| Homo sapiens uncharacterized LOC643763 (UG0898H09), non-coding RNA"	Chr8	 63890420	 63893419	+	643763	NR_027378.1	NA	NA	NA	NA	NA	inter
CUST_19626_PI429285431	6.2393637	P	6.2702885	P	0.978792668310633	0	lncRNA	21282-1_{1..216}	lnc-SLCO2B1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLCO2B1-3:1	chr11	 74976155	 74976370	+	lnc-SLCO2B1-3	lnc-SLCO2B1-3:1	ENSG00000254963.1	CTD-2562J17.9	ARRB1	NA	chr11:74971166-74986214	inner
CUST_36845_PI429285431	0.9034662	A	0.9042453	A	0.999460114822104	0	lncRNA	38010-1_{1..216}	n345318|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_867|NULL|-1.2862100|-0.3228282	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345318|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_867|NULL|-1.2862100|-0.3228282	chr15	 94785815	 94786030	+	NA	NA	NA	NA	MCTP2	NA	chr15:94816725-94831492	inter
CUST_49093_PI429285431	4.9735107	P	5.229187	P	0.837594398941301	0	lncRNA	52917-1_{1..645}	hg19_lincRNAsTranscripts_TCONS_l2_00020407 range=chr4:9701064-9705109 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020407 range=chr4:9701064-9705109 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	  9701064	  9701708	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47313_PI429285431	9.285778	P	8.69759	P	1.50335737031121	0	lncRNA	51374-1_{1..2432}	"gi|383872556|ref|NR_047555.1| Homo sapiens ubiquitin-conjugating enzyme E2 variant 1 (UBE2V1), transcript variant 14, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|383872556|ref|NR_047555.1| Homo sapiens ubiquitin-conjugating enzyme E2 variant 1 (UBE2V1), transcript variant 14, non-coding RNA"	Chr20	 48697661	 48700092	-	7335	NR_047555.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014907	5.489436	P	5.314175	P	1.12916866582912	0	lncRNA	XR_132874	XR_132874	XR_132874	NA	Hs.667843	LOC100653033	uncharacterized LOC100653033	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100653033 (LOC100653033), miscRNA [XR_132874]"	chr6:30461187-30461128	hs|6p21.33	Agilent_HUMAN_G3V2	XR_132874	XR_132874	chr6	 30461128	 30461187	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006652	0.8722637	A	0.8754472	A	0.997795798777819	0	lncRNA	XR_111039	XR_111039	XR_111039	NA	Hs.649223	LOC100507163	uncharacterized LOC100507163	ENST00000458168	THC2654979	NA	"PREDICTED: Homo sapiens hypothetical LOC100507163 (LOC100507163), miscRNA [XR_111039]"	chr10:9328910-9328969	hs|10p14	Agilent_HUMAN_G3V2	XR_111039	XR_111039	chr10	  9328910	  9328969	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2299_PI429285431	0.89058906	A	0.89631575	A	0.99603842878195	0	lncRNA	2292-1_{1..602}	"transcript_id ""ENST00000505997.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505997.1"" | genecode_v17"	chr5	106150906	106151507	-	ENSG00000251027.1	ENST00000505997.1	CTC-254B4.1	CTC-254B4.1-002	NA	NA	NA	inter
CUST_46051_PI429285431	1.5508221	A	1.888945	A	0.791069908818913	0	lncRNA	50326-1_{1..2160}	"gi|372466574|ref|NR_045962.1| Homo sapiens keratin 8 (KRT8), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372466574|ref|NR_045962.1| Homo sapiens keratin 8 (KRT8), transcript variant 4, non-coding RNA"	Chr12	 53290971	 53293130	-	3856	NR_045962.1	NA	NA	NA	"hg19_refFlat_KRT18:range=chr12:53342958-533466265'pad=0,hg19_refFlat_KRT18:range=chr12:53342958-533466265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30"	NA	inter
CUST_44246_PI429285431	2.6267953	A	2.5480206	A	1.05612068226733	0	lncRNA	48892-1_{1..2363}	"gi|239735499|ref|NR_027766.1| Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1 (NUDT16P1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239735499|ref|NR_027766.1| Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1 (NUDT16P1), transcript variant 1, non-coding RNA"	Chr3	131080718	131083080	+	152195	NR_027766.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008729	2.9499273	P	1.9509782	A	1.99854367373498	0	lncRNA	TCONS_00023640	NA	NA	NA	NA	XLOC_011441	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011441), lincRNA [TCONS_00023640]"	chr15:40615504-40615445	hs|15q15.1	Agilent_HUMAN_G3V2	TCONS_00023640	TCONS_00023640	chr15	 40615445	 40615504	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42046_PI429285431	0.88474494	A	0.8954128	A	0.992632874212833	0	lncRNA	43943-1_{1..83}	ENST00000584048 ncrna:miRNA chromosome:GRCh37:21:28326280:28326362:1 gene:ENSG00000266133 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584048 ncrna:miRNA chromosome:GRCh37:21:28326280:28326362:1 gene:ENSG00000266133 gene_biotype:miRNA transcript_biotype:miRNA	chr21	 28326280	 28326362	+	ENSG00000266133	ENST00000584048	NA	NA	ADAMTS5	NA	chr21:28316280-28336362	inner
CUST_18900_PI429285431	3.152739	P	3.2057357	P	0.963932012622419	0	lncRNA	20592-1_{1..577}	lnc-RP11-785H20.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-785H20.1.1-2:1	chr8	122655613	122656189	+	lnc-RP11-785H20.1.1-2	lnc-RP11-785H20.1.1-2:1	ENSG00000248690	AC104233.1	HAS2	NA	chr8:122645613-122653630	inter
CUST_31525_PI429285431	0.8971011	A	0.8897554	A	1.00510463572857	0	lncRNA	33283-1_{1..3000}	n338012|AK127470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|399|NULL|16.6599000|-0.1252656	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338012|AK127470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|399|NULL|16.6599000|-0.1252656	chr1	 75037868	 75040867	-	NA	NA	NA	NA	C1orf173	NA	chr1:75033795-75139422	inner
LNCA_21_P0004870	0.9038441	A	0.9272509	A	0.983906548549759	0	lncRNA	TCONS_00011763	NA	NA	NA	NA	XLOC_005224	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005224), lincRNA [TCONS_00011763]"	chr6:28597626-28597685	hs|6p22.1	Agilent_HUMAN_G3V2	TCONS_00011763	TCONS_00011763	chr6	 28597626	 28597685	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34121_PI429285431	6.3133345	P	6.5976686	P	0.821120523253032	0	lncRNA	35644-1_{1..3000}	n340956|AL833496|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3421|NULL|1.2389200|-0.2067956	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340956|AL833496|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3421|NULL|1.2389200|-0.2067956	chr11	  6627525	  6630524	-	NA	NA	NA	NA	TPP1	"hg19_refFlat_ILK:range=chr11:6625502-66318425'pad=0,hg19_refFlat_ILK:range=chr11:6625502-66318425'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.50chr11:6633997-6640692"	NA	inner
CUST_2817_PI429285431	5.3631315	P	5.2479906	P	1.0830808188399	0	lncRNA	2800-1_{1..541}	"transcript_id ""ENST00000584686.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584686.1"" | genecode_v17"	chr7	 45023446	 45023986	-	ENSG00000232956.3	ENST00000584686.1	SNHG15	SNHG15-005	MYO1G	NA	chr7:45013446-45018704	inter
CUST_34131_PI429285431	3.2423286	A	1.4751703	A	3.40382838328215	0	lncRNA	35652-1_{1..1439}	n340967|CR611231|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3433|NULL|-1.2033600|-0.3352811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340967|CR611231|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3433|NULL|-1.2033600|-0.3352811	chr11	  9766573	  9768011	+	NA	NA	NA	NA	SWAP70	NA	chr11:9756573-9774508	inner
LNCA_21_P0005624	0.9087226	A	0.93478465	A	0.98209735456135	0	lncRNA	ENST00000506428	XR_108912	XR_108912	NA	Hs.720321	XLOC_007093	NA	ENST00000506428	THC2518039	NA	"PREDICTED: Homo sapiens hypothetical LOC100505532 (LOC100505532), miscRNA [XR_108912]"	chr8:61316121-61316062	hs|8q12.1	Agilent_HUMAN_G3V2	ENST00000506428	ENST00000506428	chr8	 61316062	 61316121	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009108	4.3829727	P	3.2533174	P	2.18806455054019	0	lncRNA	TCONS_00024862	NA	NA	NA	NA	XLOC_011754	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011754), lincRNA [TCONS_00024862]"	chr16:65427539-65427598	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024862	TCONS_00024862	chr16	 65427539	 65427598	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9713_PI429285431	0.9029196	A	0.91433394	A	0.992119398460349	0	lncRNA	11229-1_{1..1071}	lnc-PSMG1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PSMG1-5:1	chr21	 40390924	 40391994	-	lnc-PSMG1-5	lnc-PSMG1-5:1	XLOC_014080	linc-ERG-11	NA	NA	NA	inter
CUST_29832_PI429285431	5.4652405	P	4.941114	P	1.43806262113396	0	lncRNA	31595-1_{1..862}	n333671|D83030|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000101783_02|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000101783_02|-0.0138293|-0.3850324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333671|D83030|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000101783_02|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000101783_02|-0.0138293|-0.3850324	chr6	  2531261	  2532122	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43736_PI429285431	0.9248365	A	0.99500626	A	0.952525908996939	0	lncRNA	48480-1_{1..3000}	"gi|282395054|ref|NR_033184.1| Homo sapiens zinc finger protein 678 (ZNF678), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|282395054|ref|NR_033184.1| Homo sapiens zinc finger protein 678 (ZNF678), transcript variant 2, non-coding RNA"	Chr1	227751220	227754219	+	339500	NR_033184.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0009353	0.9039525	A	0.925727	A	0.985020394170167	0	lncRNA	TCONS_00025744	NA	NA	NA	NA	XLOC_012561	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012561), lincRNA [TCONS_00025744]"	chr17:68153571-68153512	hs|17q24.3	Agilent_HUMAN_G3V2	TCONS_00025744	TCONS_00025744	chr17	 68153512	 68153571	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014481	2.5420508	A	3.331435	P	0.578591005056844	0	lncRNA	XR_110026	XR_110026	XR_110026	NA	Hs.665943	LOC100507555	uncharacterized LOC100507555	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507555, transcript variant 2 (LOC100507555), miscRNA [XR_110026]"	chr3:3842200-3842141	hs|3p26.2	Agilent_HUMAN_G3V2	XR_110026	XR_110026	chr3	  3842141	  3842200	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36871_PI429285431	0.893722	A	0.90768796	A	0.990366239081391	0	lncRNA	38030-1_{1..2037}	n345340|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_889|NULL|-1.3070000|-0.2549671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345340|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_889|NULL|-1.3070000|-0.2549671	chr17	  1107775	  1109811	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006876	3.3026454	P	3.4454904	P	0.905731287579326	0	lncRNA	TCONS_00018215	NA	NA	NA	NA	XLOC_008495	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008495), lincRNA [TCONS_00018215]"	chr10:63241699-63253067	hs|10q21.2	Agilent_HUMAN_G3V2	TCONS_00018215	TCONS_00018215	chr10	 63241699	 63253067	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46918_PI429285431	2.9620197	A	2.377532	A	1.49950642105275	0	lncRNA	51033-1_{1..2489}	"gi|338753422|ref|NR_040020.1| Homo sapiens uncharacterized LOC400620 (LOC400620), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|338753422|ref|NR_040020.1| Homo sapiens uncharacterized LOC400620 (LOC400620), non-coding RNA"	Chr17	 71782961	 71785449	+	400620	NR_040020.1	NA	NA	NA	NA	NA	inter
CUST_668_PI429285431	8.502985	P	8.515112	P	0.99162943406241	0	lncRNA	661-1_{1..391}	"transcript_id ""ENST00000457371.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457371.1"" | genecode_v17"	chr2	  4020436	  4020826	-	ENSG00000237401.2	ENST00000457371.1	AC107070.1	AC107070.1-005	NA	NA	NA	inter
CUST_50360_PI429285431	6.9184847	P	7.0271144	P	0.927468571471982	0	lncRNA	54074-1_{1..530}	hg19_lincRNAsTranscripts_TCONS_l2_00030092 range=chr9:140065310-140066201 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030092 range=chr9:140065310-140066201 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	140065310	140065839	-	NA	NA	NA	NA	GRIN1	NA	chr9:140055310-140063214	inter
CUST_46731_PI429285431	9.678733	P	10.412919	P	0.601157115045889	0	lncRNA	50883-1_{1..1503}	"gi|237858720|ref|NR_027685.1| Homo sapiens RPA interacting protein (RPAIN), transcript variant 14, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|237858720|ref|NR_027685.1| Homo sapiens RPA interacting protein (RPAIN), transcript variant 14, non-coding RNA"	Chr17	  5322961	  5324463	+	84268	NR_027685.1	NA	NA	NA	NA	NA	inter
CUST_33967_PI429285431	8.581259	P	7.3115354	P	2.41115366812879	0	lncRNA	35505-1_{1..333}	n340776|CR604135|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3239|NULL|-1.2199000|-0.4095145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340776|CR604135|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3239|NULL|-1.2199000|-0.4095145	chr5	179157348	179157680	-	NA	NA	NA	NA	MAML1	NA	chr5:179159851-179167681	inner
CUST_45413_PI429285431	2.3441596	A	2.3906777	A	0.96827040194662	0	lncRNA	49839-1_{1..485}	"gi|397139345|ref|XR_158855.1| PREDICTED: Homo sapiens uncharacterized LOC100996601 (LOC100996601), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139345|ref|XR_158855.1| PREDICTED: Homo sapiens uncharacterized LOC100996601 (LOC100996601), misc_RNA"	NA	NA	NA	NA	NA	XR_158855.1	NA	NA	NA	NA	NA	Unknown
CUST_51790_PI429285431	1.4922361	A	1.5528063	A	0.958885061860632	0	lncRNA	55339-1_{1..503}	hg19_lincRNAsTranscripts_TCONS_l2_00012336 range=chr19:15674921-15684691 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012336 range=chr19:15674921-15684691 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 15674921	 15675423	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30500_PI429285431	10.745635	P	11.413827	P	0.629294831943137	0	lncRNA	32280-1_{1..282}	n335654|CR610135|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000289330|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000289330|0.5364420|-0.1896173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335654|CR610135|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000289330|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000289330|0.5364420|-0.1896173	chr11	 64812023	 64812304	+	NA	NA	NA	NA	SNX15	NA	chr11:64802023-64808044	inner
CUST_108_PI429201921	3.384861	P	3.2453365	P	1.10154199717755	0	lncRNA	109-2_{3001..3145}	TC0X002158.hg.1	 TCONS_l2_00030560-XLOC_l2_015780 // Broad TUCP // linc-ARMCX2 chrX:-:101032843-101035506 // chrX // 100 // 100 // 0 // --- // 0/// TCONS_l2_00030559-XLOC_l2_015780 // Broad TUCP // linc-ARMCX2 chrX:-:101032475-101035614 // chrX // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00030558-XLOC_l2_015780 // Broad TUCP // linc-ARMCX2 chrX:-:101032468-101035606 // chrX // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chrX:-:101032468-101035606	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00030558-XLOC_l2_015780	linc-ARMCX2	chrX	101032468	101035606	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49448_PI429285431	2.0428526	A	2.7232544	A	0.623991464546331	0	lncRNA	53247-1_{1..622}	hg19_lincRNAsTranscripts_TCONS_l2_00023995 range=chr6:4145770-4274919 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023995 range=chr6:4145770-4274919 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	  4145770	  4146391	+	NA	NA	NA	NA	ECI2	NA	chr6:4135770-4135831	inter
CUST_21276_PI429285431	3.2970357	P	5.0035186	P	0.306406137347513	0	lncRNA	22901-1_{1..722}	lnc-KRTAP8-1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KRTAP8-1-1:1	chr21	 32201357	 32202078	-	lnc-KRTAP8-1-1	lnc-KRTAP8-1-1:1	ENSG00000184586.4	KRTAP7-1	KRTAP7-1	NA	chr21:32201357-32202051	inner
CUST_10655_PI429285431	0.8965962	A	0.88986164	A	1.00467895355404	0	lncRNA	12187-1_{1..597}	lnc-GPR65-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR65-1:12	chr14	 88511398	 88511994	+	lnc-GPR65-1	lnc-GPR65-1:12	XLOC_010897	linc-SPATA7-3	NA	NA	NA	inter
CUST_37814_PI429285431	0.8912873	A	0.90567946	A	0.990073708963869	0	lncRNA	38905-1_{1..352}	n346327|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1877|NULL|-1.5071200|-0.2885849	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346327|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1877|NULL|-1.5071200|-0.2885849	chr1	101837010	101837361	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26265_PI429285431	0.8878551	A	1.4918026	A	0.657951205072558	0	lncRNA	27772-1_{1..557}	lnc-GPATCH2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-GPATCH2-2:1	chr1	218518945	218519501	-	lnc-GPATCH2-2	lnc-GPATCH2-2:1	ENSG00000232480.1	RP11-224O19.2	RRP15	NA	chr1:218508945-218511325	inner
CUST_32458_PI429285431	3.512854	P	4.395508	P	0.542368764542287	0	lncRNA	34129-1_{1..1962}	n339059|BC013195|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1488|NULL|0.1344970|-0.1387734	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339059|BC013195|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1488|NULL|0.1344970|-0.1387734	chr16	  4385870	  4387831	-	NA	NA	NA	NA	CORO7-PAM16	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-55.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_GLIS2:range=chr16:4382282-43875255'pad=0,hg19_refFlat_GLIS2:range=chr16:4382282-43875255'pad=0 3'pad=0 strand=+ repeatMasking=none,-110.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90chr16:4390252-4397819"	NA	inner
CUST_11342_PI429285431	4.166242	P	4.9011226	P	0.600867751586332	0	lncRNA	12905-1_{1..338}	lnc-PTPN2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPN2-2:1	chr18	 12749293	 12749630	-	lnc-PTPN2-2	lnc-PTPN2-2:1	XLOC_012776	linc-CEP76	NA	NA	NA	inter
CUST_43384_PI429285431	1.4122721	A	1.3345381	A	1.05535911559244	0	lncRNA	48198-1_{1..662}	"gi|310118513|ref|XR_109873.1| PREDICTED: Homo sapiens uncharacterized LOC645010 (FLJ16126), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118513|ref|XR_109873.1| PREDICTED: Homo sapiens uncharacterized LOC645010 (FLJ16126), misc_RNA"	NA	NA	NA	NA	NA	XR_109873.1	NA	NA	NA	NA	NA	Unknown
CUST_14889_PI429285431	4.0756044	P	4.049765	P	1.01807186226967	0	lncRNA	16553-1_{1..725}	lnc-SIX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIX1-1:1	chr14	 61108819	 61109543	-	lnc-SIX1-1	lnc-SIX1-1:1	XLOC_011044	linc-C14orf39	SIX1	NA	chr14:61098819-61116155	inter
CUST_22974_PI429285431	1.6408696	A	0.91491085	A	1.65399944452706	0	lncRNA	24548-1_{1..396}	lnc-SLC24A5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC24A5-2:1	chr15	 47819859	 47820254	+	lnc-SLC24A5-2	lnc-SLC24A5-2:1	ENSG00000259740.1	RP11-142J21.2	SEMA6D	NA	chr15:47809859-47829953	inner
CUST_17132_PI429285431	1.6710001	A	3.0116346	A	0.394846963300148	0	lncRNA	18841-1_{1..477}	lnc-C3orf30-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C3orf30-5:1	chr3	117380746	117381222	+	lnc-C3orf30-5	lnc-C3orf30-5:1	XLOC_002772	linc-C3orf30-4	NA	NA	NA	inter
CUST_31198_PI429285431	1.2872361	A	0.91311413	A	1.29605053301134	0	lncRNA	32992-1_{1..1332}	n337640|BC073810|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|19|NULL|-0.6609620|-0.1351350	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n337640|BC073810|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|19|NULL|-0.6609620|-0.1351350	chrX	 18908413	 18909744	+	NA	NA	NA	NA	PHKA2	"hg19_refFlat_PHKA2:range=chrX:18911603-190020505'pad=0,hg19_refFlat_PHKA2:range=chrX:18911603-190020505'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50chrX:18910416-18923093"	NA	inner
CUST_10744_PI429285431	2.5390463	A	2.4351199	P	1.07469434524523	0	lncRNA	12280-1_{1..575}	lnc-AL669831.1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL669831.1-4:2	chr1	   758660	   759234	+	lnc-AL669831.1-4	lnc-AL669831.1-4:2	XLOC_000008	linc-SAMD11-4	NA	NA	NA	inter
CUST_44812_PI429285431	0.88341737	A	0.8792058	A	1.0029235029954	0	lncRNA	49346-1_{1..1719}	"gi|301129257|ref|NR_034173.1| Homo sapiens vanin 2 (VNN2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301129257|ref|NR_034173.1| Homo sapiens vanin 2 (VNN2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_034173.1	NA	NA	NA	NA	NA	Unknown
CUST_45159_PI429285431	7.5001993	P	7.7875123	P	0.819426809552326	0	lncRNA	49635-1_{1..2484}	"gi|373432629|ref|NR_046072.1| Homo sapiens NK3 homeobox 1 (NKX3-1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373432629|ref|NR_046072.1| Homo sapiens NK3 homeobox 1 (NKX3-1), transcript variant 3, non-coding RNA"	Chr8	 23536206	 23538689	-	4824	NR_046072.1	NA	NA	NA	NA	NA	inter
CUST_12506_PI429285431	1.3857043	A	2.267087	A	0.542846909457872	0	lncRNA	14117-1_{1..494}	lnc-EFHA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFHA1-1:1	chr13	 22244736	 22245229	-	lnc-EFHA1-1	lnc-EFHA1-1:1	XLOC_010529	linc-EFHA1-5	FGF9	NA	chr13:22245215-22255083	inter
CUST_26708_PI429285431	9.127981	P	9.058592	P	1.04927220916451	0	lncRNA	28205-1_{1..330}	n1315|AF308283|scaRNA|Homosapiens|U85|NONCODEv2.0|n1315|NULL|-1.5906100|-0.4071142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n1315|AF308283|scaRNA|Homosapiens|U85|NONCODEv2.0|n1315|NULL|-1.5906100|-0.4071142	chr12	  6619387	  6619716	+	NA	NA	NA	NA	NCAPD2	NA	chr12:6609387-6629717	inner
CUST_14702_PI429285431	0.8928408	A	0.9052588	A	0.991429436795798	0	lncRNA	16366-1_{1..1095}	lnc-ARHGAP6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ARHGAP6-1:1	chrX	 11129003	 11130097	-	lnc-ARHGAP6-1	lnc-ARHGAP6-1:1	XLOC_008111	linc-MID1	HCCS	NA	chrX:11129406-11139258	inter
CUST_15558_PI429285431	0.90726066	A	0.88522	A	1.01539471770547	0	lncRNA	17242-1_{1..1642}	lnc-DHX38-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX38-3:1	chr16	 72566858	 72568499	+	lnc-DHX38-3	lnc-DHX38-3:1	XLOC_011780	linc-PSMD7-10	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50"	NA	inter
CUST_27056_PI429285431	0.8838849	A	0.8926425	A	0.993948081333585	0	lncRNA	28590-1_{1..413}	n324167|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051455|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051455|-1.2655600|-0.3281194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324167|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051455|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051455|-1.2655600|-0.3281194	chr9	   102715	   103127	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34449_PI429285431	1.0654984	A	1.6125507	A	0.684417094883115	0	lncRNA	35925-1_{1..1864}	n341324|AK024938|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3793|NULL|-0.1564370|-0.3648867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341324|AK024938|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3793|NULL|-0.1564370|-0.3648867	chr7	132642525	132644388	-	NA	NA	NA	NA	CHCHD3	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10chr7:132632525-132654331"	NA	inner
CUST_48935_PI429285431	6.0365853	P	5.7929296	P	1.18398901847525	0	lncRNA	52777-1_{1..527}	hg19_lincRNAsTranscripts_TCONS_l2_00018923 range=chr3:149768638-149769297 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018923 range=chr3:149768638-149769297 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	149768638	149769164	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25677_PI429285431	4.99434	P	5.457427	P	0.725432356266886	0	lncRNA	27206-1_{1..534}	lnc-RELL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RELL1-1:1	chr4	 37590447	 37590980	-	lnc-RELL1-1	lnc-RELL1-1:1	ENSG00000248936.1	RP11-36B15.1	RELL1	NA	chr4:37592422-37600497	inner
CUST_413_PI429285431	4.9900436	P	5.1775427	P	0.878126627990376	0	lncRNA	405-1_{1..501}	"transcript_id ""ENST00000448665.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448665.1"" | genecode_v17"	chr1	143391568	143392068	+	ENSG00000238261.4	ENST00000448665.1	RP11-435B5.5	RP11-435B5.5-005	NA	NA	NA	inter
CUST_14262_PI429285431	0.90428585	A	1.1109667	A	0.866528526839484	0	lncRNA	15920-1_{1..1523}	lnc-SIK1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIK1-4:1	chr21	 44899380	 44900902	-	lnc-SIK1-4	lnc-SIK1-4:1	XLOC_014105	linc-SIK1-2	NA	NA	NA	inter
CUST_14756_PI429285431	1.6576352	A	2.0950289	A	0.738467482390492	0	lncRNA	16418-2_{3001..6000}	lnc-C20orf166-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf166-3:2	chr20	 61066579	 61069578	+	lnc-C20orf166-3	lnc-C20orf166-3:2	XLOC_013601	linc-C20orf166	NA	NA	NA	inter
CUST_7600_PI429285431	2.80431	A	2.8651314	A	0.95871811669773	0	lncRNA	9235-1_{1..2577}	lnc-L34079.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-L34079.1-1:1	chr19	 44085715	 44088291	+	lnc-L34079.1-1	lnc-L34079.1-1:1	ENSG00000234465	AC006276.1	IRGQ	"hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50chr19:44088519-44098106"	NA	inner
CUST_25494_PI429285431	1.2346458	A	1.9042431	A	0.628682147051772	0	lncRNA	27024-1_{1..505}	lnc-PEX7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PEX7-1:1	chr6	136968910	136969414	+	lnc-PEX7-1	lnc-PEX7-1:1	ENSG00000234263.1	RP3-325F22.3	MAP3K5	NA	chr6:136958910-136979137	inner
CUST_47089_PI429285431	2.7569559	A	0.9779692	A	3.43185048382835	0	lncRNA	51171-1_{1..568}	"gi|357430763|ref|NR_045525.1| Homo sapiens zinc finger protein 724, pseudogene (ZNF724P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|357430763|ref|NR_045525.1| Homo sapiens zinc finger protein 724, pseudogene (ZNF724P), non-coding RNA"	Chr19	 23406607	 23407174	-	440519	NR_045525.1	NA	NA	NA	NA	NA	inter
CUST_20825_PI429285431	0.9147101	A	0.923412	A	0.993986456718063	0	lncRNA	22456-1_{1..836}	lnc-RP11-150O12.3.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-150O12.3.1-3:1	chr8	 37531480	 37532315	-	lnc-RP11-150O12.3.1-3	lnc-RP11-150O12.3.1-3:1	ENSG00000253344.1	RP11-346L1.2	NA	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70"	NA	inter
LNCA_21_P0010114	3.8187776	P	2.4256966	A	2.62638970515301	0	lncRNA	TCONS_00028640	NA	NA	NA	NA	XLOC_013687	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013687), lincRNA [TCONS_00028640]"	chr20:23010333-23010274	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028640	TCONS_00028640	chr20	 23010274	 23010333	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1090_PI429285431	0.8911588	A	1.4416152	A	0.682804087512959	0	lncRNA	1079-1_{1..927}	"transcript_id ""ENST00000598659.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598659.1"" | genecode_v17"	chr2	145425534	145426460	+	ENSG00000226674.3	ENST00000598659.1	AC074093.1	AC074093.1-029	NA	NA	NA	inter
CUST_27287_PI429285431	1.8651872	A	1.9139645	A	0.966755317646592	0	lncRNA	28844-1_{1..650}	n324437|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041680|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041680|-0.8154590|-0.2696442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324437|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041680|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041680|-0.8154590|-0.2696442	chr6	107279182	107279831	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36429_PI429285431	1.06289	A	0.9027066	A	1.11742918020885	0	lncRNA	37643-1_{1..2604}	n344942|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_491|NULL|-1.6991500|-0.3070013	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344942|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_491|NULL|-1.6991500|-0.3070013	chr7	  7119854	  7122457	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48842_PI429285431	0.91401976	A	0.946432	A	0.977784038587572	0	lncRNA	52679-2_{3001..3276}	hg19_lincRNAsTranscripts_TCONS_l2_00018696 range=chr3:94654298-94871009 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018696 range=chr3:94654298-94871009 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	 94657298	 94657573	+	NA	NA	NA	NA	NA	"hg19_refFlat_WDR82:range=chr3:52291506-523123775'pad=0,hg19_refFlat_WDR82:range=chr3:52291506-523123775'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40"	NA	inter
CUST_5462_PI429285431	3.277575	P	2.3322089	A	1.92567748640365	0	lncRNA	5396-1_{1..3000}	"transcript_id ""ENST00000566929.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566929.1"" | genecode_v17"	chr16	 24484119	 24487118	-	ENSG00000260072.1	ENST00000566929.1	CTD-2313J23.1	CTD-2313J23.1-001	NA	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-40.32;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40"	NA	inter
CUST_1357_PI429285431	0.9168684	A	0.9578166	A	0.97201588760854	0	lncRNA	1345-1_{1..681}	"transcript_id ""ENST00000487624.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000487624.1"" | genecode_v17"	chr3	 59050876	 59051556	+	ENSG00000243295.1	ENST00000487624.1	CTD-2185K10.1	CTD-2185K10.1-001	NA	"hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80"	NA	inter
CUST_45127_PI429285431	0.9123302	A	0.9281795	A	0.989074226988643	0	lncRNA	49607-1_{1..1361}	"gi|310124657|ref|XR_110811.1| PREDICTED: Homo sapiens uncharacterized LOC100507312, transcript variant 1 (LOC100507312), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124657|ref|XR_110811.1| PREDICTED: Homo sapiens uncharacterized LOC100507312, transcript variant 1 (LOC100507312), misc_RNA"	NT_113901.1	   137966	   139326	+	100507312	XR_110811.2	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30"	NA	Unknown
CUST_10748_PI429285431	1.4486144	A	0.9111777	A	1.45139147373589	0	lncRNA	12284-1_{1..363}	lnc-ANGPT2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANGPT2-3:2	chr8	  5923520	  5923882	-	lnc-ANGPT2-3	lnc-ANGPT2-3:2	XLOC_006984	linc-CSMD1-2	NA	NA	NA	inter
LNCA_21_P0002922	0.8967391	A	4.33705	P	0.0921219717064544	0	lncRNA	ENST00000422271	NA	NA	NA	NA	XLOC_003386	NA	ENST00000422271	NA	NA	"BROAD Institute lincRNA (XLOC_003386), lincRNA [TCONS_00005926]"	chr3:194489151-194486288	hs|3q29	Agilent_HUMAN_G3V2	ENST00000422271	ENST00000422271	chr3	194486288	194489151	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20148_PI429285431	2.4934728	A	0.9198604	A	2.97649072745157	0	lncRNA	21793-1_{1..1940}	lnc-ANKRD32-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ANKRD32-1:1	chr5	 94129047	 94130986	+	lnc-ANKRD32-1	lnc-ANKRD32-1:1	ENSG00000249175.1	CTC-484P3.3	MCTP1	NA	chr5:94119047-94139304	inner
CUST_38367_PI429285431	1.4289224	A	1.054152	A	1.29663318347674	0	lncRNA	39409-1_{1..2043}	n382172|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001xib.2||-0.2656700|-0.3054387	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382172|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001xib.2||-0.2656700|-0.3054387	chr14	 65453947	 65455989	+	NA	NA	NA	NA	CHURC1-FNTB	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr14:65443947-65465990"	NA	inner
CUST_37513_PI429285431	3.3506246	P	3.4597154	P	0.927172190454579	0	lncRNA	38616-2_{3001..3853}	n345986|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1535|NULL|-1.4952600|-0.2737443	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345986|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1535|NULL|-1.4952600|-0.2737443	chr15	 67280899	 67281751	-	NA	NA	NA	NA	SMAD3	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20chr15:67358195-67361569"	NA	inter
CUST_47601_PI429285431	8.166237	P	9.22812	P	0.479006454107054	0	lncRNA	51604-1_{1..1922}	"gi|388596654|ref|NR_051952.1| Homo sapiens histone deacetylase 8 (HDAC8), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388596654|ref|NR_051952.1| Homo sapiens histone deacetylase 8 (HDAC8), transcript variant 7, non-coding RNA"	NW_004070882.1	    18533	    20454	-	55869	NR_051952.1	NA	NA	NA	NA	NA	Unknown
CUST_8246_PI429285431	2.7582912	A	2.2135632	A	1.45874529226166	0	lncRNA	9835-1_{1..926}	lnc-SOX2-1:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SOX2-1:17	chr3	181457357	181458282	+	lnc-SOX2-1	lnc-SOX2-1:17	ENSG00000242808	RP11-4B14.2	NA	NA	NA	inter
LNCA_21_P0001819	3.4695308	P	0.9268331	A	5.82677539451623	0	lncRNA	ENST00000463302	NA	NA	NA	NA	XLOC_001335	NA	ENST00000463302	NA	NA	"BROAD Institute lincRNA (XLOC_001335), lincRNA [TCONS_00002813]"	chr2:9244635-9244694	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000463302	ENST00000463302	chr2	  9244635	  9244694	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14296_PI429285431	0.8969627	A	1.6669629	A	0.586417393321221	0	lncRNA	15955-1_{1..903}	lnc-DMRTA1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRTA1-5:1	chr9	 23945991	 23946893	+	lnc-DMRTA1-5	lnc-DMRTA1-5:1	XLOC_007302	linc-IFT74-5	NA	NA	NA	inter
CUST_17997_PI429285431	6.623379	P	6.7466035	P	0.918133279048723	0	lncRNA	19731-1_{1..391}	lnc-C1orf195-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf195-2:1	chr1	 14924390	 14924780	-	lnc-C1orf195-2	lnc-C1orf195-2:1	XLOC_000712	linc-LRRC38-1	KAZN	NA	chr1:14925213-14934613	inter
LNCA_21_P0005256	0.8799824	A	0.89035285	A	0.992837525484497	0	lncRNA	ENST00000497598	NA	NA	NA	NA	XLOC_006228	NA	ENST00000497598	THC2677808	NA	"BROAD Institute lincRNA (XLOC_006228), lincRNA [TCONS_00013071]"	chr7:123993407-123993466	hs|7q31.33	Agilent_HUMAN_G3V2	ENST00000497598	ENST00000497598	chr7	123993407	123993466	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37450_PI429285431	6.3017645	P	7.213907	P	0.531395346822928	0	lncRNA	38549-1_{1..437}	n345900|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1449|NULL|-1.3489200|-0.1082357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345900|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1449|NULL|-1.3489200|-0.1082357	chr7	 44073612	 44074048	-	NA	NA	NA	NA	DBNL	NA	chr7:44084239-44086409	inter
LNCA_21_P0007278	4.128057	P	4.3363237	P	0.865576538212998	0	lncRNA	TCONS_00019479	NA	NA	NA	NA	XLOC_009282	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009282), lincRNA [TCONS_00019479]"	chr11:114251017-114251076	hs|11q23.2	Agilent_HUMAN_G3V2	TCONS_00019479	TCONS_00019479	chr11	114251017	114251076	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011900	0.875541	A	1.0156499	A	0.907450654973483	0	lncRNA	ENST00000428379	NA	NA	NA	NA	XLOC_l2_007876	NA	ENST00000428379	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007876), lincRNA [TCONS_l2_00014407]"	chr2:7214720-7214661	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000428379	ENST00000428379	chr2	  7214661	  7214720	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6294_PI429285431	5.4328175	P	5.9352593	P	0.705910996253659	0	lncRNA	6218-1_{1..844}	"transcript_id ""ENST00000592843.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592843.1"" | genecode_v17"	chr19	  1238178	  1239021	+	ENSG00000267778.1	ENST00000592843.1	AC004221.2	AC004221.2-001	STK11	NA	chr19:1228178-1228434	inter
LNCA_21_P0013763	2.2312005	A	1.8834188	A	1.27260235811572	0	lncRNA	TCONS_l2_00030204	NA	NA	NA	NA	XLOC_l2_015520	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015520), lincRNA [TCONS_l2_00030204]"	chrX:52654718-52654777	hs|Xp11.22	Agilent_HUMAN_G3V2	TCONS_l2_00030204	TCONS_l2_00030204	chrX	 52654718	 52654777	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009721	0.8732316	A	0.87502676	A	0.998756463740153	0	lncRNA	TCONS_00027012	NA	NA	NA	NA	XLOC_013057	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013057), lincRNA [TCONS_00027012]"	chr19:37177670-37177729	hs|19q13.12	Agilent_HUMAN_G3V2	TCONS_00027012	TCONS_00027012	chr19	 37177670	 37177729	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32787_PI429285431	0.9014528	A	0.909598	A	0.994370085288838	0	lncRNA	34422-1_{1..2037}	n339429|BC033333|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1861|NULL|-0.1028660|-0.2657894	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339429|BC033333|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1861|NULL|-0.1028660|-0.2657894	chr3	112455295	112457331	-	NA	NA	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60"	NA	inter
CUST_42590_PI429285431	7.5350122	P	7.4550877	P	1.05696272549365	0	lncRNA	45437-1_{1..128}	ENST00000391153 ncrna:snoRNA chromosome:GRCh37:2:18221872:18221999:-1 gene:ENSG00000212455 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391153 ncrna:snoRNA chromosome:GRCh37:2:18221872:18221999:-1 gene:ENSG00000212455 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 18221872	 18221999	-	ENSG00000212455	ENST00000391153	NA	NA	NA	NA	NA	inter
CUST_44796_PI429285431	1.069814	A	1.1169196	A	0.967876179304784	0	lncRNA	49332-1_{1..3000}	"gi|373938457|ref|NR_028338.2| Homo sapiens TRAF3 interacting protein 2 (TRAF3IP2), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|373938457|ref|NR_028338.2| Homo sapiens TRAF3 interacting protein 2 (TRAF3IP2), transcript variant 1, non-coding RNA"	Chr6	111876581	111879580	-	10758	NR_028338.2	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.44;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30"	NA	inter
CUST_40707_PI429285431	0.8786612	A	0.8758787	A	1.00193054313339	0	lncRNA	41448-1_{1..1333}	n410271|NR_037175_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037175_8||-1.1555100|-0.3386527	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410271|NR_037175_8|lncRNA|Homosapiens||RefGeneNoncode|NR_037175_8||-1.1555100|-0.3386527	chr6	  4269058	  4270390	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17776_PI429285431	3.6370127	P	3.1414804	P	1.40984083723008	0	lncRNA	19508-1_{1..345}	lnc-PI3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PI3-1:1	chr20	 43815795	 43816139	+	lnc-PI3-1	lnc-PI3-1:1	XLOC_013531	linc-SEMG1	NA	NA	NA	inter
CUST_49285_PI429285431	0.8808763	A	0.88847613	A	0.994746049793784	0	lncRNA	53104-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00022747 range=chr5:1596690-1634048 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022747 range=chr5:1596690-1634048 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	  1596690	  1599689	-	NA	NA	NA	NA	NA	"hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CCDC127:range=chr5:205412-2169645'pad=0,hg19_refFlat_CCDC127:range=chr5:205412-2169645'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-65.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.49;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40"	NA	inter
LNCA_21_P0010599	8.325769	P	8.475003	P	0.901729109268811	0	lncRNA	THC2733783	NA	NA	NA	NA	XLOC_l2_000791	NA	NA	THC2733783	NA	"BROAD Institute lincRNA (XLOC_l2_000791), lincRNA [TCONS_l2_00001041]"	chr1:016944434-016944375	hs|1p36.13	Agilent_HUMAN_G3V2	THC2733783	THC2733783	chr1	 16944375	 16944434	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49425_PI429285431	6.2040586	P	6.6246195	P	0.747134092379022	0	lncRNA	53228-1_{1..2958}	hg19_lincRNAsTranscripts_TCONS_l2_00022657 range=chr5:177357466-177360935 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022657 range=chr5:177357466-177360935 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	177357466	177360423	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014638	0.87506986	A	1.0622053	A	0.878348005185006	0	lncRNA	XR_110858	XR_110858	XR_110858	NA	Hs.127406	LOC100507030	uncharacterized LOC100507030	ENST00000443763	THC2698930	NA	"PREDICTED: Homo sapiens hypothetical LOC100507030 (LOC100507030), miscRNA [XR_110858]"	chr1:246277109-246277168	hs|1q44	Agilent_HUMAN_G3V2	XR_110858	XR_110858	chr1	246277109	246277168	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5490_PI429285431	1.1320931	A	1.8151464	A	0.622845696484407	0	lncRNA	5423-1_{1..866}	"transcript_id ""ENST00000563407.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563407.1"" | genecode_v17"	chr16	 32199654	 32200519	+	ENSG00000260847.1	ENST00000563407.1	RP11-17M15.1	RP11-17M15.1-001	LOC729264	NA	chr16:32211210-32214851	inter
CUST_51770_PI429285431	3.3085256	A	3.3157928	P	0.994975426423267	0	lncRNA	55321-1_{1..2022}	hg19_lincRNAsTranscripts_TCONS_l2_00012264 range=chr19:7852407-7855885 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012264 range=chr19:7852407-7855885 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	  7852407	  7854428	+	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-48.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-58.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00"	NA	inter
CUST_12395_PI429285431	0.8964251	A	1.0736063	A	0.884429345560386	0	lncRNA	14009-1_{1..2517}	lnc-SLC39A11-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC39A11-1:8	chr17	 70588342	 70590858	-	lnc-SLC39A11-1	lnc-SLC39A11-1:8	XLOC_012568	linc-ABCA5-3	NA	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70"	NA	inter
CUST_25432_PI429285431	0.8755089	A	1.095701	A	0.858451122992697	0	lncRNA	26962-1_{1..566}	lnc-RECQL5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RECQL5-2:1	chr17	 73680545	 73681110	-	lnc-RECQL5-2	lnc-RECQL5-2:1	ENSG00000264270.1	RP11-474I11.7	SAP30BP	NA	chr17:73670545-73690879	inner
LNCA_21_P0007804	0.8734561	A	0.8760617	A	0.998195565659035	0	lncRNA	THC2767888	NA	NA	NA	NA	XLOC_010262	NA	NA	THC2767888	NA	"BROAD Institute lincRNA (XLOC_010262), lincRNA [TCONS_00020998]"	chr12:130633710-130633651	hs|12q24.33	Agilent_HUMAN_G3V2	THC2767888	THC2767888	chr12	130633651	130633710	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11803_PI429285431	0.8796798	A	1.1395693	A	0.835151883569408	0	lncRNA	13384-1_{1..1351}	lnc-CALN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CALN1-1:1	chr7	 69062220	 69063570	-	lnc-CALN1-1	lnc-CALN1-1:1	XLOC_006493	linc-SBDS-8	AUTS2	NA	chr7:69063905-69073004	inter
CUST_16955_PI429285431	4.271869	P	3.8889663	P	1.30396278884279	0	lncRNA	18667-1_{1..2818}	lnc-FAM27B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM27B-2:1	chr9	 68399775	 68402592	-	lnc-FAM27B-2	lnc-FAM27B-2:1	XLOC_007710	linc-FAM75A7-7	NA	NA	NA	inter
CUST_26199_PI429285431	0.8726491	A	0.87367016	A	0.999292505532136	0	lncRNA	27710-1_{1..524}	lnc-GLCCI1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLCCI1-1:1	chr7	  8155877	  8156400	+	lnc-GLCCI1-1	lnc-GLCCI1-1:1	ENSG00000227719.1	AC006042.6	ICA1	NA	chr7:8152814-8166191	inner
LNCA_21_P0007286	6.7056823	P	5.6646867	P	2.0576471402674	0	lncRNA	TCONS_00019503	NA	NA	NA	NA	XLOC_009304	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009304), lincRNA [TCONS_00019503]"	chr11:119898221-119898280	hs|11q23.3	Agilent_HUMAN_G3V2	TCONS_00019503	TCONS_00019503	chr11	119898221	119898280	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36683_PI429285431	1.7011514	A	0.9002667	A	1.74216914478916	0	lncRNA	37866-1_{1..966}	n345172|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_721|NULL|-1.2413400|-0.2662184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345172|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_721|NULL|-1.2413400|-0.2662184	chr12	 27599429	 27600394	-	NA	NA	NA	NA	C12orf70	NA	chr12:27619743-27620684	inter
CUST_11795_PI429285431	0.9000099	A	0.90707016	A	0.995118155812892	0	lncRNA	13376-1_{1..287}	lnc-PDGFD-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDGFD-2:1	chr11	103720142	103720428	-	lnc-PDGFD-2	lnc-PDGFD-2:1	XLOC_009536	linc-DCUN1D5-4	NA	NA	NA	inter
CUST_9858_PI429285431	1.6866267	A	0.91233075	A	1.71035517677224	0	lncRNA	11379-1_{1..1877}	lnc-DCUN1D1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCUN1D1-2:1	chr3	182510936	182512812	-	lnc-DCUN1D1-2	lnc-DCUN1D1-2:1	XLOC_003349	linc-DNAJC19-8	ATP11B	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20chr3:182511291-182521182"	NA	inter
CUST_47716_PI429285431	0.9016605	A	1.3028554	A	0.757230853391445	0	lncRNA	51678-2_{3001..6000}	"gi|385137104|ref|NR_047642.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 72, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137104|ref|NR_047642.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 72, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047642.1	NA	NA	NA	NA	NA	inter
CUST_16400_PI429285431	0.9279716	A	0.9848832	A	0.961319830698062	0	lncRNA	18096-1_{1..515}	lnc-IFNG-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IFNG-4:2	chr12	 67983646	 67984160	-	lnc-IFNG-4	lnc-IFNG-4:2	XLOC_010113	linc-GRIP1-6	NA	NA	NA	inter
CUST_47410_PI429285431	8.075192	P	7.961067	P	1.08231841620814	0	lncRNA	51453-1_{1..1850}	"gi|224493761|ref|NR_027128.1| Homo sapiens chromosome 21 open reading frame 67 (C21orf67), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224493761|ref|NR_027128.1| Homo sapiens chromosome 21 open reading frame 67 (C21orf67), transcript variant 1, non-coding RNA"	Chr21	 46353199	 46355048	-	84536	NR_027128.1	NA	NA	NA	NA	NA	inter
CUST_10242_PI429285431	0.9105287	A	0.9245608	A	0.990320837025004	0	lncRNA	11767-1_{1..767}	lnc-MYO6-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYO6-3:3	chr6	 77698014	 77698780	+	lnc-MYO6-3	lnc-MYO6-3:3	XLOC_005355	linc-IRAK1BP1-2	NA	NA	NA	inter
CUST_32161_PI429285431	0.91460556	A	1.3119004	A	0.759280656749304	0	lncRNA	33862-1_{1..1009}	n338732|CR625221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1152|NULL|-1.1212500|-0.3976171	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338732|CR625221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1152|NULL|-1.1212500|-0.3976171	chr13	 50952494	 50953502	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13715_PI429285431	1.2941893	A	1.2050161	A	1.06376037294921	0	lncRNA	15354-1_{1..1793}	lnc-ASB7-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASB7-4:3	chr15	100891884	100893676	+	lnc-ASB7-4	lnc-ASB7-4:3	XLOC_011384	linc-ASB7-3	ADAMTS17	NA	chr15:100881884-100882183	inter
LNCA_21_P0005851	0.9024544	A	0.92343754	A	0.985560854591018	0	lncRNA	TCONS_00015031	NA	NA	NA	NA	XLOC_007110	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007110), lincRNA [TCONS_00015031]"	chr8:67122680-67122621	hs|8q13.1	Agilent_HUMAN_G3V2	TCONS_00015031	TCONS_00015031	chr8	 67122621	 67122680	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32011_PI429285431	0.8912253	A	0.89831346	A	0.995098911601674	0	lncRNA	33732-1_{1..1936}	n338576|BC000772|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|982|NULL|-0.8627210|-0.2069071	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n338576|BC000772|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|982|NULL|-0.8627210|-0.2069071	chr19	 38675015	 38676950	+	NA	NA	NA	NA	SIPA1L3	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90chr19:38665015-38686900"	NA	inner
LNCA_21_P0001283	0.8944973	A	0.91223574	A	0.987779929295322	0	lncRNA	TCONS_00000890	NA	NA	NA	NA	XLOC_000141	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000141), lincRNA [TCONS_00000890]"	chr1:36917135-36917194	hs|1p34.3	Agilent_HUMAN_G3V2	TCONS_00000890	TCONS_00000890	chr1	 36917135	 36917194	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002050	2.3002887	A	3.9453895	P	0.319724055663503	0	lncRNA	ENST00000453936	NA	NA	NA	NA	XLOC_002089	NA	ENST00000453936	NA	NA	"BROAD Institute lincRNA (XLOC_002089), lincRNA [TCONS_00003277]"	chr2:47080618-47080559	hs|2p21	Agilent_HUMAN_G3V2	ENST00000453936	ENST00000453936	chr2	 47080559	 47080618	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23454_PI429285431	12.375118	P	12.27176	P	1.07427101534509	0	lncRNA	25022-1_{1..712}	lnc-EIF6-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF6-1:3	chr20	 33865812	 33866523	-	lnc-EIF6-1	lnc-EIF6-1:3	ENSG00000126005.10	MT1P3	MMP24	NA	chr20:33855812-33864804	inter
CUST_49455_PI429285431	0.8964487	A	0.9127955	A	0.988733212718955	0	lncRNA	53255-1_{1..1676}	hg19_lincRNAsTranscripts_TCONS_l2_00024299 range=chr6:78359953-78633095 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024299 range=chr6:78359953-78633095 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 78359953	 78361628	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50889_PI429285431	0.9208323	A	1.2103834	A	0.818156591463646	0	lncRNA	54532-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00006292 range=chr12:59100981-59175567 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006292 range=chr12:59100981-59175567 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	 59100981	 59103980	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21471_PI429285431	2.0782778	A	1.8462901	A	1.17445195813379	0	lncRNA	23090-1_{1..486}	lnc-GDF5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GDF5-1:2	chr20	 34078682	 34079167	-	lnc-GDF5-1	lnc-GDF5-1:2	ENSG00000230155.1	RP3-477O4.14	CEP250	"hg19_refFlat_CEP250:range=chr20:34050193-340994555'pad=0,hg19_refFlat_CEP250:range=chr20:34050193-340994555'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60chr20:34068682-34088745"	NA	inner
CUST_9186_PI429285431	0.8781177	A	0.8821443	A	0.997212864855968	0	lncRNA	10700-1_{1..3000}	lnc-HEATR2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-HEATR2-3:1	chr7	   564491	   567490	+	lnc-HEATR2-3	lnc-HEATR2-3:1	ENSG00000223855	XLOC_005958	PDGFA	NA	chr7:554491-559481	inter
LNCA_21_P0004415	0.8793595	A	0.8892229	A	0.993186529764094	0	lncRNA	TCONS_00010379	NA	NA	NA	NA	XLOC_004889	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004889), lincRNA [TCONS_00010379]"	chr5:74199357-74195289	hs|5q13.3	Agilent_HUMAN_G3V2	TCONS_00010379	TCONS_00010379	chr5	 74195289	 74199357	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41231_PI429285431	9.721425	P	9.641865	P	1.05669571532319	0	lncRNA	42144-1_{1..74}	ENST00000584174 ncrna:miRNA chromosome:GRCh37:15:69452990:69453063:1 gene:ENSG00000266374 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584174 ncrna:miRNA chromosome:GRCh37:15:69452990:69453063:1 gene:ENSG00000266374 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 69452990	 69453063	+	ENSG00000266374	ENST00000584174	NA	NA	GLCE	NA	chr15:69452973-69463063	inter
LNCA_21_P0014158	0.8786166	A	0.88774145	A	0.993695095798815	0	lncRNA	ENST00000373404	XR_108640	XR_108640	NA	NA	LOC100505530	NA	ENST00000373404	THC2626851	NA	"PREDICTED: Homo sapiens hypothetical LOC100505530 (LOC100505530), miscRNA [XR_108640]"	chr6:37506137-37506196	hs|6p21.2	Agilent_HUMAN_G3V2	ENST00000373404	ENST00000373404	chr6	 37506137	 37506196	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22040_PI429285431	3.2791073	P	3.5403886	P	0.834346582477016	0	lncRNA	23649-1_{1..3000}	lnc-CCDC102B-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC102B-8:1	chr18	 65178270	 65181269	+	lnc-CCDC102B-8	lnc-CCDC102B-8:1	ENSG00000263424.1	CTD-2541J13.2	DSEL	"hg19_refFlat_DSEL:range=chr18:65178207-651818755'pad=0,hg19_refFlat_DSEL:range=chr18:65178207-651818755'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20chr18:65173819-65183967"	NA	inner
CUST_24031_PI429285431	4.806651	P	5.36236	P	0.680322637406297	0	lncRNA	25583-1_{1..515}	lnc-RUNDC3A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RUNDC3A-1:1	chr17	 42397564	 42398078	+	lnc-RUNDC3A-1	lnc-RUNDC3A-1:1	ENSG00000237411.1	AC003043.2	SLC25A39	"hg19_refFlat_SLC25A39:range=chr17:42397369-424009305'pad=0,hg19_refFlat_SLC25A39:range=chr17:42397369-424009305'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50chr17:42396993-42402217"	NA	inner
CUST_35883_PI429285431	2.3940182	A	2.5234146	A	0.914213862348145	0	lncRNA	37270-1_{1..679}	n344545|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_93|NULL|-1.2837700|-0.1773437	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344545|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_93|NULL|-1.2837700|-0.1773437	chr8	103953773	103954451	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00322442	6.9055605	P	7.801119	P	0.53753906137164	0	lncRNA	ENST00000436710	XR_108951	XR_108951	NA	NA	LOC100506119	NA	ENST00000436710	THC2610745	NA	"PREDICTED: Homo sapiens hypothetical LOC100506119, transcript variant 1 (LOC100506119), miscRNA [XR_108951]"	chr9:132104105-132104164	hs|9q34.11	Agilent_HUMAN_G3V2	ENST00000436710	ENST00000436710	chr9	132104105	132104164	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38447_PI429285431	3.7018523	P	3.7017298	P	1.00008491413462	0	lncRNA	39470-1_{1..3000}	n382698|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bkm.2||7.2242100|-0.3041773	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382698|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bkm.2||7.2242100|-0.3041773	chr15	 85047737	 85050736	-	NA	NA	NA	NA	NA	"hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.50"	NA	inter
CUST_47524_PI429285431	5.396278	P	5.3837376	P	1.00873023101492	0	lncRNA	51535-1_{1..2332}	"gi|195927034|ref|NR_002184.2| Homo sapiens ribosomal RNA processing 7 homolog B (S. cerevisiae) (RRP7B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|195927034|ref|NR_002184.2| Homo sapiens ribosomal RNA processing 7 homolog B (S. cerevisiae) (RRP7B), non-coding RNA"	NA	NA	NA	NA	NA	NR_002184.2	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SERHL2:range=chr22:42950027-429700615'pad=0,hg19_refFlat_SERHL2:range=chr22:42950027-429700615'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70"	NA	Unknown
CUST_9455_PI429285431	0.8900731	A	0.8897303	A	1.00023763908519	0	lncRNA	10960-1_{1..3000}	lnc-LARGE-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LARGE-1:1	chr22	 34606219	 34609218	-	lnc-LARGE-1	lnc-LARGE-1:1	XLOC_014354	linc-LARGE-4	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.72;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60"	NA	inter
CUST_19724_PI429285431	9.79963	P	9.85247	P	0.964036716905395	0	lncRNA	21382-1_{1..616}	lnc-U47924.19.1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-U47924.19.1-1:7	chr12	  7084858	  7085473	+	lnc-U47924.19.1-1	lnc-U47924.19.1-1:7	ENSG00000126749.7	EMG1	PHB2	NA	chr12:7074858-7079916	inner
CUST_49249_PI429285431	1.3347784	A	0.90323436	A	1.34867622137807	0	lncRNA	53068-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00022807 range=chr5:17141201-17217476 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022807 range=chr5:17141201-17217476 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 17141201	 17144200	-	NA	NA	NA	NA	BASP1	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-58.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40chr5:17217750-17227476"	NA	inter
CUST_49502_PI429285431	0.8908037	A	1.4243801	A	0.690840036775551	0	lncRNA	53293-1_{1..858}	hg19_lincRNAsTranscripts_TCONS_l2_00024090 range=chr6:23337940-23347467 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024090 range=chr6:23337940-23347467 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 23337940	 23338797	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22493_PI429285431	1.7949466	A	3.165986	A	0.386612610193518	0	lncRNA	24080-1_{1..558}	lnc-SUSD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SUSD2-1:1	chr22	 24499000	 24499557	+	lnc-SUSD2-1	lnc-SUSD2-1:1	ENSG00000232545.1	KB-318B8.7	CABIN1	NA	chr22:24489000-24509317	inner
CUST_24328_PI429285431	3.2330668	P	3.2278333	P	1.00363417342207	0	lncRNA	25881-1_{1..536}	lnc-ABCC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ABCC1-1:1	chr16	 15979526	 15980061	+	lnc-ABCC1-1	lnc-ABCC1-1:1	ENSG00000262171.1	CTA-972D3.2	FOPNL	NA	chr16:15969526-15982447	inner
CUST_39628_PI429285431	3.7010984	P	3.9699605	P	0.829973914852075	0	lncRNA	40567-1_{1..515}	n405204|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000002190||-1.0098300|-0.1415887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405204|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000002190||-1.0098300|-0.1415887	chr1	  2471870	  2472384	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18671_PI429285431	6.198192	P	7.016266	P	0.56719864846317	0	lncRNA	20373-1_{1..3000}	lnc-C17orf103-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C17orf103-1:1	chr17	 21156472	 21159471	-	lnc-C17orf103-1	lnc-C17orf103-1:1	ENSG00000154035	C17orf103	C17orf103	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90chr17:21146472-21156578"	NA	inner
CUST_49012_PI429285431	2.1696234	A	2.5540812	A	0.766066851068461	0	lncRNA	52840-1_{1..312}	hg19_lincRNAsTranscripts_TCONS_l2_00020054 range=chr3:197836995-197838291 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020054 range=chr3:197836995-197838291 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	197836995	197837306	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42763_PI429285431	0.89794534	A	1.5146474	A	0.652160035381847	0	lncRNA	45731-1_{1..72}	ENST00000516563 ncrna:snoRNA chromosome:GRCh37:15:76109433:76109504:-1 gene:ENSG00000252372 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516563 ncrna:snoRNA chromosome:GRCh37:15:76109433:76109504:-1 gene:ENSG00000252372 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 76109433	 76109504	-	ENSG00000252372	ENST00000516563	NA	NA	NA	NA	NA	inter
CUST_49305_PI429285431	16.36934	P	16.093443	P	1.21074664062592	0	lncRNA	53123-1_{1..796}	hg19_lincRNAsTranscripts_TCONS_l2_00022249 range=chr5:33162227-33163075 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022249 range=chr5:33162227-33163075 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 33162227	 33163022	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7327_PI429285431	1.3452537	A	2.2070572	A	0.550264247452168	0	lncRNA	8670-1_{1..330}	"transcript_id ""ENST00000363913.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000363913.1"" | genecode_v17"	chr17	 70659962	 70660291	-	ENSG00000200783.1	ENST00000363913.1	RN7SKP180	RN7SKP180-201	SLC39A11	NA	chr17:70649962-70670291	inner
LNCA_21_P0011379	0.9010943	A	0.9235831	A	0.98453281648058	0	lncRNA	TCONS_l2_00009133	NA	NA	NA	NA	XLOC_l2_004954	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004954), lincRNA [TCONS_l2_00009133]"	chr15:62488298-62488239	hs|15q22.2	Agilent_HUMAN_G3V2	TCONS_l2_00009133	TCONS_l2_00009133	chr15	 62488239	 62488298	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27534_PI429285431	0.89765143	A	0.91684365	A	0.986785061091211	0	lncRNA	29110-2_{3001..3714}	n324719|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320109|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320109|0.6005500|-0.2804925	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324719|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320109|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320109|0.6005500|-0.2804925	chr22	 19988279	 19988992	-	NA	NA	NA	NA	ARVCF	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70chr22:19975279-20004170"	NA	inner
CUST_37411_PI429285431	4.788083	P	3.7421756	P	2.064664545334	0	lncRNA	38517-1_{1..2872}	n345866|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1415|NULL|-1.3012300|-0.2278155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345866|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1415|NULL|-1.3012300|-0.2278155	chr15	 85174710	 85177581	+	NA	NA	NA	NA	WDR73	"hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30chr15:85185999-85193923"	NA	inter
CUST_43465_PI429285431	1.398832	A	0.9279389	A	1.38596718523406	0	lncRNA	48269-1_{1..1526}	"gi|254750641|ref|NR_026749.2| Homo sapiens Skint-like, pseudogene (SKINTL), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|254750641|ref|NR_026749.2| Homo sapiens Skint-like, pseudogene (SKINTL), non-coding RNA"	Chr1	 48567387	 48568912	-	391037	NR_026749.2	NA	NA	NA	NA	NA	inter
CUST_18526_PI429285431	0.90968394	A	0.9122619	A	0.998214689859887	0	lncRNA	20240-1_{1..920}	lnc-TMEM75-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM75-2:6	chr8	129573316	129574235	-	lnc-TMEM75-2	lnc-TMEM75-2:6	ENSG00000253984	CTD-3056O22.1	NA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10"	NA	inter
CUST_35317_PI429285431	0.89815336	A	1.0568331	A	0.895844514138893	0	lncRNA	36722-1_{1..2598}	n342345|AK123664|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4837|NULL|-0.4198250|-0.3316903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342345|AK123664|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4837|NULL|-0.4198250|-0.3316903	chr19	 20318000	 20320597	-	NA	NA	NA	NA	ZNF486	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr19:20308000-20308984"	NA	inter
CUST_51606_PI429285431	3.1403418	P	3.2867022	P	0.903526988259082	0	lncRNA	55172-1_{1..422}	hg19_lincRNAsTranscripts_TCONS_l2_00010690 range=chr17:29343978-29359524 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010690 range=chr17:29343978-29359524 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 29343978	 29344399	+	NA	NA	NA	NA	LOC646021	NA	chr17:29333978-29359716	inter
CUST_26939_PI429285431	9.784837	P	9.411118	P	1.29568857394462	0	lncRNA	28460-1_{1..395}	n324019|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053236|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053236|-0.1484260|-0.0695905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324019|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053236|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053236|-0.1484260|-0.0695905	chr9	 97401647	 97402041	-	NA	NA	NA	NA	FBP1	NA	chr9:97391647-97402531	inner
CUST_20508_PI429285431	0.90197265	A	1.0880831	A	0.878972265883846	0	lncRNA	22150-1_{1..596}	lnc-TMEM178-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM178-1:3	chr2	 39811745	 39812340	+	lnc-TMEM178-1	lnc-TMEM178-1:3	ENSG00000231312.2	AC007246.3	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10"	NA	inter
LNCA_21_P0004007	0.8813499	A	0.89271283	A	0.992154752963976	0	lncRNA	ENST00000515077	NA	NA	NA	NA	XLOC_004410	NA	ENST00000515077	NA	NA	"BROAD Institute lincRNA (XLOC_004410), lincRNA [TCONS_00009410]"	chr5:66565948-66566007	hs|5q12.3	Agilent_HUMAN_G3V2	ENST00000515077	ENST00000515077	chr5	 66565948	 66566007	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7144_PI429285431	0.91484207	A	0.90569735	A	1.0063587685571	0	lncRNA	7079-2_{3001..5284}	"transcript_id ""ENST00000440408.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000440408.1"" | genecode_v17"	chrY	 14777265	 14779548	+	ENSG00000233864.3	ENST00000440408.1	TTTY15	TTTY15-001	USP9Y	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80chrY:14813160-14814162"	NA	inter
CUST_15270_PI429285431	3.4981194	P	3.761282	P	0.833259288769028	0	lncRNA	16944-1_{1..524}	lnc-SPAM1-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPAM1-4:6	chr7	124640736	124641259	+	lnc-SPAM1-4	lnc-SPAM1-4:6	XLOC_006231	linc-ARF5-8	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.61"	NA	inter
LNCA_21_P0002060	0.878474	A	0.8873813	A	0.993844950523481	0	lncRNA	ENST00000411785	NA	NA	NA	NA	XLOC_002137	NA	ENST00000411785	NA	NA	"BROAD Institute lincRNA (XLOC_002137), lincRNA [TCONS_00003309]"	chr2:66462568-66462509	hs|2p14	Agilent_HUMAN_G3V2	ENST00000411785	ENST00000411785	chr2	 66462509	 66462568	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46859_PI429285431	6.515937	P	6.687076	P	0.888141221570909	0	lncRNA	50990-1_{1..3000}	"gi|217035090|ref|NR_024560.1| Homo sapiens MAPT intronic transcript 1 (non-protein coding) (MAPT-IT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|217035090|ref|NR_024560.1| Homo sapiens MAPT intronic transcript 1 (non-protein coding) (MAPT-IT1), non-coding RNA"	Chr17	 43973149	 43976148	+	100130148	NR_024560.1	NA	NA	NA	NA	NA	inter
CUST_24273_PI429285431	0.88944453	A	0.9033576	A	0.990402547122287	0	lncRNA	25824-1_{1..378}	lnc-IYD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-IYD-1:1	chr6	150926659	150927036	+	lnc-IYD-1	lnc-IYD-1:1	ENSG00000232891.1	RP11-136K14.1	PLEKHG1	NA	chr6:150920999-150936986	inner
CUST_26938_PI429285431	0.8770059	A	1.2559639	A	0.768992802367369	0	lncRNA	28459-1_{1..1577}	n324018|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053254|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053254|-1.1467300|-0.2977955	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324018|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053254|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053254|-1.1467300|-0.2977955	chr9	 97897313	 97898889	+	NA	NA	NA	NA	FANCC	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50chr9:97887313-97914015"	NA	inner
CUST_8576_PI429285431	1.1639137	A	2.497827	A	0.396690760351876	0	lncRNA	10133-2_{3001..4508}	lnc-FBXO25-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXO25-1:1	chr8	   602416	   603923	+	lnc-FBXO25-1	lnc-FBXO25-1:1	ENSG00000248171	ENST00000507973	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
CUST_32098_PI429285431	4.6515193	P	5.3735094	P	0.60626056977186	0	lncRNA	33803-1_{1..3000}	n338661|BC051708|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1075|NULL|-1.0126100|-0.3234062	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338661|BC051708|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1075|NULL|-1.0126100|-0.3234062	chr2	 10092865	 10095864	-	NA	NA	NA	NA	GRHL1	"hg19_refFlat_GRHL1:range=chr2:10091963-101408355'pad=0,hg19_refFlat_GRHL1:range=chr2:10091963-101408355'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50chr2:10091792-10106058"	NA	inner
CUST_25245_PI429285431	3.4701533	P	3.1622493	P	1.23790791506816	0	lncRNA	26775-1_{1..567}	lnc-PRSS27-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRSS27-2:8	chr16	  2721346	  2721912	-	lnc-PRSS27-2	lnc-PRSS27-2:8	ENSG00000260565.1	ERVK13-1	NA	NA	NA	inter
CUST_10468_PI429285431	7.133168	P	7.051815	P	1.05800980679979	0	lncRNA	11994-1_{1..468}	lnc-ACOT11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACOT11-1:1	chr1	 54982710	 54983177	+	lnc-ACOT11-1	lnc-ACOT11-1:1	XLOC_000202	linc-ACOT11-1	ACOT11	NA	chr1:54990059-54993024	inter
LNCA_21_P0007674	2.1426892	A	1.3933983	A	1.68096641450645	0	lncRNA	TCONS_00020662	NA	NA	NA	NA	XLOC_009964	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009964), lincRNA [TCONS_00020662]"	chr12:133183918-133183977	hs|12q24.33	Agilent_HUMAN_G3V2	TCONS_00020662	TCONS_00020662	chr12	133183918	133183977	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3492791	0.8735903	A	0.87633723	A	0.9980977847244	0	lncRNA	ENST00000518934	XR_108909	XR_108909	NA	Hs.255156	NA	NA	ENST00000518934	THC2608796	NA	"PREDICTED: Homo sapiens hypothetical LOC286178 (LOC286178), miscRNA [XR_108909]"	chr8:58662668-58662727	hs|8q12.1	Agilent_HUMAN_G3V2	ENST00000518934	ENST00000518934	chr8	 58662668	 58662727	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006171	4.1122026	P	4.1489363	P	0.974859558828512	0	lncRNA	BC036850	NA	BC036850	NA	Hs.553987	XLOC_007438	NA	NA	THC2611258	NA	"BROAD Institute lincRNA (XLOC_007438), lincRNA [TCONS_00016044]"	chr9:89602466-89602525	hs|9q21.33	Agilent_HUMAN_G3V2	BC036850	BC036850	chr9	 89602466	 89602525	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49795_PI429285431	0.88031596	A	0.8772517	A	1.00212624042961	0	lncRNA	53552-1_{1..912}	hg19_lincRNAsTranscripts_TCONS_l2_00025912 range=chr7:62837296-62838527 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025912 range=chr7:62837296-62838527 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 62837296	 62838207	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_357_PI429285431	0.87338376	A	0.90308684	A	0.979621892098734	0	lncRNA	349-1_{1..706}	"transcript_id ""ENST00000453988.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453988.1"" | genecode_v17"	chr1	112147002	112147707	-	ENSG00000231346.1	ENST00000453988.1	RP5-836N10.1	RP5-836N10.1-003	NA	NA	NA	inter
LNCA_21_P0010439	0.87381077	A	0.8733989	A	1.00028552728441	0	lncRNA	TCONS_00029694	NA	NA	NA	NA	XLOC_014366	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014366), lincRNA [TCONS_00029694]"	chr22:37284390-37284331	hs|22q12.3	Agilent_HUMAN_G3V2	TCONS_00029694	TCONS_00029694	chr22	 37284331	 37284390	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35646_PI429285431	5.7244973	P	5.0752144	P	1.56838842538362	0	lncRNA	37062-1_{1..3000}	n342794|D87443|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5297|NULL|15.4712000|-0.1832910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342794|D87443|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5297|NULL|15.4712000|-0.1832910	chr11	130745774	130748773	-	NA	NA	NA	NA	SNX19	NA	chr11:130745766-130786382	inner
CUST_30769_PI429285431	0.909873	A	0.9281366	A	0.987420429823937	0	lncRNA	32554-1_{1..401}	n336607|Z36792|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327100|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327100|-1.0950500|-0.0987122	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336607|Z36792|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327100|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327100|-1.0950500|-0.0987122	chrX	102840433	102840833	+	NA	NA	NA	NA	TCEAL4	NA	chrX:102840419-102842657	inner
CUST_41085_PI429285431	0.8840442	A	0.88925374	A	0.996395533777635	0	lncRNA	41777-1_{1..90}	ENST00000384888 ncrna:miRNA chromosome:GRCh37:19:54264387:54264476:1 gene:ENSG00000207620 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384888 ncrna:miRNA chromosome:GRCh37:19:54264387:54264476:1 gene:ENSG00000207620 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54264387	 54264476	+	ENSG00000207620	ENST00000384888	NA	NA	NA	NA	NA	inter
LNCA_21_P0002503	0.87480897	A	0.8745253	A	1.00019664439268	0	lncRNA	TCONS_00004443	NA	NA	NA	NA	XLOC_002317	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002317), lincRNA [TCONS_00004443]"	chr2:130324282-130324223	hs|2q21.1	Agilent_HUMAN_G3V2	TCONS_00004443	TCONS_00004443	chr2	130324223	130324282	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012424	3.0215566	P	2.7609334	A	1.19799609042353	0	lncRNA	TCONS_l2_00019079	NA	NA	NA	NA	XLOC_l2_010056	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010056), lincRNA [TCONS_l2_00019079]"	chr3:194542550-194542609	hs|3q29	Agilent_HUMAN_G3V2	TCONS_l2_00019079	TCONS_l2_00019079	chr3	194542550	194542609	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001469	6.783699	P	6.828908	P	0.969149408260371	0	lncRNA	TCONS_00001393	NA	NA	NA	NA	XLOC_000711	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000711), lincRNA [TCONS_00001393]"	chr1:14717978-14717205	hs|1p36.21	Agilent_HUMAN_G3V2	TCONS_00001393	TCONS_00001393	chr1	 14717205	 14717978	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10218_PI429285431	0.9040242	A	1.1898003	A	0.820300208345576	0	lncRNA	11743-1_{1..871}	lnc-COL28A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL28A1-1:1	chr7	  7605545	  7606415	-	lnc-COL28A1-1	lnc-COL28A1-1:1	XLOC_006350	linc-COL28A1	MIOS	NA	chr7:7606616-7616237	inter
CUST_18561_PI429285431	2.2295437	A	2.039071	A	1.14113754910682	0	lncRNA	20272-1_{1..3000}	lnc-EVX1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-EVX1-3:2	chr7	 27244331	 27247330	+	lnc-EVX1-3	lnc-EVX1-3:2	ENSG00000243766	HOTTIP	HOXA13	NA	chr7:27236499-27239725	inter
CUST_2442_PI429285431	3.5317364	P	4.1131525	P	0.66830746763792	0	lncRNA	2434-1_{1..287}	"transcript_id ""ENST00000510150.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510150.1"" | genecode_v17"	chr5	174247030	174247316	+	ENSG00000251144.1	ENST00000510150.1	CTD-2532K18.2	CTD-2532K18.2-001	NA	NA	NA	inter
LNCA_21_P0004535	1.8816454	A	1.8445866	A	1.02601996203619	0	lncRNA	TCONS_00010829	NA	NA	NA	NA	XLOC_004629	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004629), lincRNA [TCONS_00010829]"	chr5:171165435-171169608	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00010829	TCONS_00010829	chr5	171165435	171169608	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21054_PI429285431	0.9057163	A	1.1645935	A	0.835738092645333	0	lncRNA	22681-1_{1..1363}	lnc-KIFAP3-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIFAP3-2:4	chr1	170463422	170464784	-	lnc-KIFAP3-2	lnc-KIFAP3-2:4	ENSG00000231407.1	RP11-576I22.2	NA	NA	NA	inter
CUST_38273_PI429285431	0.8943936	A	0.9022438	A	0.994573433300479	0	lncRNA	39328-1_{1..2345}	n381849|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001rfp.1||-1.1488800|-0.3726228	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381849|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001rfp.1||-1.1488800|-0.3726228	chr12	 22477345	 22479689	-	NA	NA	NA	NA	ST8SIA1	NA	chr12:22467345-22487648	inner
CUST_8047_PI429285431	1.3560997	A	1.6259044	A	0.829431819764244	0	lncRNA	9655-1_{1..1589}	lnc-P2RX7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-P2RX7-1:1	chr12	121626864	121628452	+	lnc-P2RX7-1	lnc-P2RX7-1:1	ENSG00000248728	XLOC_009913	P2RX7	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10chr12:121616864-121624354"	NA	inter
LNCA_21_P0002070	0.87134504	A	0.8745165	A	0.997804125909476	0	lncRNA	ENST00000455845	NA	NA	NA	NA	XLOC_002183	NA	ENST00000455845	NA	NA	"BROAD Institute lincRNA (XLOC_002183), lincRNA [TCONS_00003329]"	chr2:82210537-82210396	hs|2p12	Agilent_HUMAN_G3V2	ENST00000455845	ENST00000455845	chr2	 82210396	 82210537	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34867_PI429285431	1.3261769	A	1.6772019	A	0.7840268678077	0	lncRNA	36293-1_{1..472}	n341778|X89667|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4255|NULL|2.8343600|-0.0980993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341778|X89667|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4255|NULL|2.8343600|-0.0980993	chr9	125377390	125377861	+	NA	NA	NA	NA	OR1Q1	NA	chr9:125377017-125377961	inner
LNCA_21_P0003575	2.1143837	A	2.818371	A	0.613873245841017	0	lncRNA	ENST00000508998	NA	NA	NA	NA	XLOC_003457	NA	ENST00000508998	THC2724164	NA	"BROAD Institute lincRNA (XLOC_003457), lincRNA [TCONS_00007993]"	chr4:11773345-11773404	hs|4p15.33	Agilent_HUMAN_G3V2	ENST00000508998	ENST00000508998	chr4	 11773345	 11773404	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007635	3.2489347	P	2.9324136	P	1.24532396392173	0	lncRNA	TCONS_00020579	NA	NA	NA	NA	XLOC_009895	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009895), lincRNA [TCONS_00020579]"	chr12:116716516-116716575	hs|12q24.21	Agilent_HUMAN_G3V2	TCONS_00020579	TCONS_00020579	chr12	116716516	116716575	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44676_PI429285431	2.2395246	A	1.7838926	A	1.37138343400601	0	lncRNA	49236-1_{1..3000}	"gi|310119714|ref|XR_108679.1| PREDICTED: Homo sapiens uncharacterized LOC100506647 (LOC100506647), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310119714|ref|XR_108679.1| PREDICTED: Homo sapiens uncharacterized LOC100506647 (LOC100506647), misc_RNA"	NA	NA	NA	NA	NA	XR_108679.1	NA	NA	NA	NA	NA	Unknown
CUST_48733_PI429285431	0.8800385	A	0.88426894	A	0.997071977485434	0	lncRNA	52572-1_{1..2207}	hg19_lincRNAsTranscripts_TCONS_l2_00015971 range=chr2:131193224-131199048 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015971 range=chr2:131193224-131199048 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	131193224	131195430	-	NA	NA	NA	NA	LOC646802	NA	chr2:131198341-131198697	inter
CUST_8145_PI429285431	1.3084469	A	1.7528753	A	0.734875418760518	0	lncRNA	9748-1_{1..2742}	lnc-BAALC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BAALC-1:1	chr8	104256486	104259227	+	lnc-BAALC-1	lnc-BAALC-1:1	ENSG00000250720	XLOC_006898	NA	"hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40"	NA	inter
CUST_8178_PI429285431	1.2864027	A	1.1202836	A	1.12203610508416	0	lncRNA	9778-1_{1..1621}	lnc-FES-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FES-2:4	chr15	 91573889	 91575509	+	lnc-FES-2	lnc-FES-2:4	ENSG00000214432	ENSG00000214432.5	SV2B	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40chr15:91575177-91584370"	NA	inter
CUST_27687_PI429285431	2.5889657	A	2.0716703	A	1.43126955058805	0	lncRNA	29265-1_{1..673}	n324894|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158277|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158277|-1.0673200|-0.2413155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324894|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158277|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158277|-1.0673200|-0.2413155	chr21	 18855803	 18856475	-	NA	NA	NA	NA	CXADR	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-27.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30chr21:18872997-18965897"	NA	inner
LNCA_21_P0010569	0.9089036	A	0.93502367	A	0.982057858936065	0	lncRNA	TCONS_l2_00000747	NA	NA	NA	NA	XLOC_l2_000566	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000566), lincRNA [TCONS_l2_00000747]"	chr1:200926518-200926577	hs|1q32.1	Agilent_HUMAN_G3V2	TCONS_l2_00000747	TCONS_l2_00000747	chr1	200926518	200926577	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25060_PI429285431	8.44985	P	7.9758787	P	1.38892750510529	0	lncRNA	26597-2_{3001..4560}	lnc-C10orf116-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf116-1:3	chr10	 88771112	 88772671	+	lnc-C10orf116-1	lnc-C10orf116-1:3	ENSG00000151303.10	AGAP11	AGAP11	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70chr10:88758112-88769960"	NA	inner
LNCA_21_P0010090	0.90769595	A	0.9303639	A	0.984410567426977	0	lncRNA	BX648826	NA	BX648826	NA	Hs.550704	XLOC_013545	NA	NA	THC2498723	NA	"BROAD Institute lincRNA (XLOC_013545), lincRNA [TCONS_00028557]"	chr20:46586362-46586421	hs|20q13.13	Agilent_HUMAN_G3V2	BX648826	BX648826	chr20	 46586362	 46586421	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3099_PI429285431	2.9032938	A	0.97602904	A	3.80333431984459	0	lncRNA	3079-1_{1..412}	"transcript_id ""ENST00000522408.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522408.1"" | genecode_v17"	chr8	 50730146	 50730557	-	ENSG00000253484.1	ENST00000522408.1	RP11-109P6.2	RP11-109P6.2-001	NA	NA	NA	inter
CUST_47226_PI429285431	1.2515509	A	0.9045339	A	1.27192799442142	0	lncRNA	51301-1_{1..2409}	"gi|260898775|ref|NR_029377.1| Homo sapiens NADH dehydrogenase (ubiquinone) complex I, assembly factor 5 (NDUFAF5), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|260898775|ref|NR_029377.1| Homo sapiens NADH dehydrogenase (ubiquinone) complex I, assembly factor 5 (NDUFAF5), transcript variant 3, non-coding RNA"	Chr20	 13765672	 13768080	+	79133	NR_029377.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0009407	0.90472424	A	0.9266039	A	0.98494859731318	0	lncRNA	TCONS_00026124	NA	NA	NA	NA	XLOC_012530	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012530), lincRNA [TCONS_00026124]"	chr17:55149845-55149786	hs|17q22	Agilent_HUMAN_G3V2	TCONS_00026124	TCONS_00026124	chr17	 55149786	 55149845	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46650_PI429285431	0.9182351	A	0.930357	A	0.991632939528852	0	lncRNA	50823-1_{1..503}	"gi|239835752|ref|NR_003658.2| Homo sapiens metallothionein 1D, pseudogene (MT1DP), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|239835752|ref|NR_003658.2| Homo sapiens metallothionein 1D, pseudogene (MT1DP), transcript variant 1, non-coding RNA"	Chr16	 56677716	 56678218	+	326343	NR_003658.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0003610	2.4498262	A	1.3034263	A	2.21360821023244	0	lncRNA	TCONS_00008078	NA	NA	NA	NA	XLOC_003544	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003544), lincRNA [TCONS_00008078]"	chr4:56253896-56253955	hs|4q12	Agilent_HUMAN_G3V2	TCONS_00008078	TCONS_00008078	chr4	 56253896	 56253955	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50147_PI429285431	0.8855263	A	0.88702464	A	0.998961968980798	0	lncRNA	53872-1_{1..483}	hg19_lincRNAsTranscripts_TCONS_l2_00029169 range=chr9:2421939-2425607 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029169 range=chr9:2421939-2425607 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	  2421939	  2422421	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18549_PI429285431	1.0619394	A	2.2819204	A	0.429288371822115	0	lncRNA	20260-1_{1..147}	lnc-CCDC90A-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CCDC90A-6:1	chr6	 14599857	 14600003	-	lnc-CCDC90A-6	lnc-CCDC90A-6:1	ENSG00000229646	RP11-330A16.1	NA	NA	NA	inter
CUST_24387_PI429285431	7.7752185	P	8.264771	P	0.712245990394959	0	lncRNA	25940-1_{1..368}	lnc-ATG16L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ATG16L2-1:1	chr11	 72477012	 72477379	+	lnc-ATG16L2-1	lnc-ATG16L2-1:1	ENSG00000255709.1	STARD10-AS1	STARD10	NA	chr11:72467012-72487338	inner
LNCA_21_P0003787	3.794046	P	0.8946594	A	7.46109097740648	0	lncRNA	TCONS_00008625	NA	NA	NA	NA	XLOC_004126	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004126), lincRNA [TCONS_00008625]"	chr4:153100060-153100001	hs|4q31.3	Agilent_HUMAN_G3V2	TCONS_00008625	TCONS_00008625	chr4	153100001	153100060	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7564_PI429285431	0.877937	A	0.8840621	A	0.995763404005172	0	lncRNA	9200-1_{1..2500}	lnc-GPRC5A-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPRC5A-2:10	chr12	 13133899	 13136398	+	lnc-GPRC5A-2	lnc-GPRC5A-2:10	ENSG00000247498	ENST00000500905	HEBP1	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-59.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90chr12:13127798-13146375"	NA	inner
CUST_25182_PI429285431	0.91983205	A	0.93054867	A	0.992599325916302	0	lncRNA	26713-1_{1..705}	lnc-CTDSP2-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTDSP2-2:7	chr12	 58329622	 58330326	-	lnc-CTDSP2-2	lnc-CTDSP2-2:7	ENSG00000257698.1	RP11-620J15.3	XRCC6BP1	NA	chr12:58335445-58339846	inter
CUST_16455_PI429285431	7.5096807	P	7.3745346	P	1.09820402196284	0	lncRNA	18153-1_{1..703}	lnc-HDAC2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HDAC2-4:2	chr6	113697245	113697947	-	lnc-HDAC2-4	lnc-HDAC2-4:2	XLOC_005808	linc-LAMA4-5	NA	NA	NA	inter
CUST_40930_PI429285431	0.93482196	A	0.91069925	A	1.01686115984866	0	lncRNA	41614-1_{1..479}	n410852|NR_038309|lncRNA|Homosapiens||RefGeneNoncode|NR_038309||5.6655500|-0.2986131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410852|NR_038309|lncRNA|Homosapiens||RefGeneNoncode|NR_038309||5.6655500|-0.2986131	chr11	 42209292	 42209770	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_23_P384698	0.87790656	A	0.88628125	A	0.994211923074647	0	lncRNA	ENST00000326237	XR_110030	XR_110030	NA	Hs.666816	NA	NA	ENST00000326237	THC2476014	NA	"PREDICTED: Homo sapiens hypothetical LOC442075 (LOC442075), miscRNA [XR_110030]"	chr3:10046661-10046720	hs|3p25.3	Agilent_HUMAN_G3V2	ENST00000326237	ENST00000326237	chr3	 10046661	 10046720	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48157_PI429285431	1.1206927	A	1.2160131	A	0.936064339102219	0	lncRNA	52022-1_{1..1052}	"gi|341913984|ref|XR_133091.1| PREDICTED: Homo sapiens uncharacterized LOC100507311 (LOC100507311), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341913984|ref|XR_133091.1| PREDICTED: Homo sapiens uncharacterized LOC100507311 (LOC100507311), misc_RNA"	NA	NA	NA	NA	NA	XR_133091.1	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00811717	2.3841584	A	2.8252354	A	0.736584528624429	0	lncRNA	ENST00000488386	XR_132543	XR_132543	NA	Hs.729434	LOC100652903	NA	ENST00000488386	NP1190475	GO:0005886|GO:0005509|GO:0016021|GO:0007155|GO:0007156	"PREDICTED: Homo sapiens hypothetical LOC100652903 (LOC100652903), miscRNA [XR_132543]"	chr7:105517644-105517703	hs|7q22.3	Agilent_HUMAN_G3V2	ENST00000488386	ENST00000488386	chr7	105517644	105517703	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5420_PI429285431	5.7540636	P	6.0250454	P	0.828755359401868	0	lncRNA	5354-2_{3001..5298}	"transcript_id ""ENST00000564305.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564305.1"" | genecode_v17"	chr16	  9452445	  9454742	+	ENSG00000261617.1	ENST00000564305.1	RP11-243A14.1	RP11-243A14.1-001	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00"	NA	inter
LNCA_21_P0004408	0.8745111	A	1.6444561	A	0.58643983109114	0	lncRNA	TCONS_00010370	NA	NA	NA	NA	XLOC_004872	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004872), lincRNA [TCONS_00010370]"	chr5:71394806-71394747	hs|5q13.2	Agilent_HUMAN_G3V2	TCONS_00010370	TCONS_00010370	chr5	 71394747	 71394806	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47110_PI429285431	3.523477	P	3.5335815	P	0.993020564499177	0	lncRNA	51191-1_{1..988}	"gi|333944043|ref|NR_038279.1| Homo sapiens long intergenic non-protein coding RNA 665 (LINC00665), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|333944043|ref|NR_038279.1| Homo sapiens long intergenic non-protein coding RNA 665 (LINC00665), transcript variant 2, non-coding RNA"	Chr19	 36803963	 36804950	-	100506930	NR_038279.1	NA	NA	NA	NA	NA	inter
CUST_43159_PI429285431	1.60666	A	0.9019644	A	1.62980075034219	0	lncRNA	47974-1_{1..715}	ENST00000602747 havana:sense_intronic chromosome:GRCh37:1:164649322:164650036:1 gene:ENSG00000269887 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602747 havana:sense_intronic chromosome:GRCh37:1:164649322:164650036:1 gene:ENSG00000269887 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr1	164649322	164650036	+	ENSG00000269887	ENST00000602747	NA	NA	PBX1	NA	chr1:164639322-164660036	inner
CUST_47303_PI429285431	6.5172577	P	6.594178	P	0.948079339216077	0	lncRNA	51369-1_{1..3000}	"gi|386781498|ref|NR_048537.1| Homo sapiens solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 (SLC9A8), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386781498|ref|NR_048537.1| Homo sapiens solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 (SLC9A8), transcript variant 3, non-coding RNA"	Chr20	 48429250	 48432249	+	23315	NR_048537.1	NA	NA	NA	NA	NA	inter
CUST_38759_PI429285431	1.3179319	A	0.8923001	A	1.34316058483834	0	lncRNA	39751-1_{1..1756}	n384340|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003exi.1||0.0053742|-0.2186259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n384340|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003exi.1||0.0053742|-0.2186259	chr3	149375996	149377751	+	NA	NA	NA	NA	WWTR1	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-62.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20chr3:149365996-149389207"	NA	inner
LNCA_21_P0009276	0.87326235	A	0.87354136	A	0.999806623704758	0	lncRNA	TCONS_00025500	NA	NA	NA	NA	XLOC_012315	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012315), lincRNA [TCONS_00025500]"	chr17:75263379-75263438	hs|17q25.2	Agilent_HUMAN_G3V2	TCONS_00025500	TCONS_00025500	chr17	 75263379	 75263438	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47138_PI429285431	1.4578161	A	2.505522	A	0.483736766714615	0	lncRNA	51219-1_{1..2737}	"gi|406855446|ref|NR_073179.1| Homo sapiens uncharacterized LOC100996307 (LOC100996307), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|406855446|ref|NR_073179.1| Homo sapiens uncharacterized LOC100996307 (LOC100996307), transcript variant 1, non-coding RNA"	Chr19	 42927907	 42930643	+	100996307	NR_073179.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014226	4.4071817	P	3.499403	P	1.87615458106424	0	lncRNA	XR_108930	XR_108930	XR_108930	NA	NA	LOC100506267	uncharacterized LOC100506267	NA	THC2529548	NA	"PREDICTED: Homo sapiens hypothetical LOC100506267, transcript variant 2 (LOC100506267), miscRNA [XR_108930]"	chr9:12700101-12700042	hs|9p23	Agilent_HUMAN_G3V2	XR_108930	XR_108930	chr9	 12700042	 12700101	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18631_PI429285431	6.5947328	P	5.936128	P	1.57855529772935	0	lncRNA	20336-1_{1..521}	lnc-HOXA9-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-HOXA9-1:3	chr7	 27209086	 27209606	-	lnc-HOXA9-1	lnc-HOXA9-1:3	ENSG00000257667	RP1-170O19.21	HOXA10	NA	chr7:27210210-27219356	inter
CUST_33626_PI429285431	1.3404423	A	2.0703135	A	0.602957741916025	0	lncRNA	35191-1_{1..301}	n340386|U52834|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2847|NULL|-1.1958800|-0.3181352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340386|U52834|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2847|NULL|-1.1958800|-0.3181352	chr5	 10585177	 10585477	+	NA	NA	NA	NA	ANKRD33B	NA	chr5:10575177-10595478	inner
LNCA_21_P0004086	4.7589636	P	4.649449	P	1.07886518731234	0	lncRNA	ENST00000513535	NA	NA	NA	NA	XLOC_004682	NA	ENST00000513535	NA	NA	"BROAD Institute lincRNA (XLOC_004682), lincRNA [TCONS_00009564]"	chr5:180113487-180113546	hs|5q35.3	Agilent_HUMAN_G3V2	ENST00000513535	ENST00000513535	chr5	180113487	180113546	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005663	0.8744585	A	0.8739095	A	1.00038061021582	0	lncRNA	TCONS_00014636	NA	NA	NA	NA	XLOC_006730	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006730), lincRNA [TCONS_00014636]"	chr8:19000111-19000170	hs|8p21.3	Agilent_HUMAN_G3V2	TCONS_00014636	TCONS_00014636	chr8	 19000111	 19000170	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37697_PI429285431	18.704134	P	18.754742	P	0.965529336776788	0	lncRNA	38789-1_{1..211}	n346189|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1739|NULL|-1.3049200|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n346189|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1739|NULL|-1.3049200|-1.0000000	chr9	 79186653	 79186863	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13277_PI429285431	0.88496435	A	0.87864596	A	1.0043891785652	0	lncRNA	14908-1_{1..664}	lnc-C5orf17-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf17-1:2	chr5	 24320728	 24321391	+	lnc-C5orf17-1	lnc-C5orf17-1:2	XLOC_004316	linc-CDH6-11	NA	NA	NA	inter
LNCA_21_P0008770	1.6126717	A	0.87542593	A	1.66699036991316	0	lncRNA	TCONS_00023767	NA	NA	NA	NA	XLOC_011564	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011564), lincRNA [TCONS_00023767]"	chr15:86621963-86621904	hs|15q25.3	Agilent_HUMAN_G3V2	TCONS_00023767	TCONS_00023767	chr15	 86621904	 86621963	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011138	0.87493676	A	1.1820697	A	0.808246387905285	0	lncRNA	TCONS_l2_00006780	NA	NA	NA	NA	XLOC_l2_003674	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003674), lincRNA [TCONS_l2_00006780]"	chr13:32534830-32534889	hs|13q13.1	Agilent_HUMAN_G3V2	TCONS_l2_00006780	TCONS_l2_00006780	chr13	 32534830	 32534889	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46365_PI429285431	4.628346	P	4.8004394	P	0.887553875218929	0	lncRNA	50587-1_{1..719}	"gi|300116251|ref|NR_033986.1| Homo sapiens long intergenic non-protein coding RNA 642 (LINC00642), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300116251|ref|NR_033986.1| Homo sapiens long intergenic non-protein coding RNA 642 (LINC00642), non-coding RNA"	Chr14	 90921574	 90922292	+	400238	NR_033986.1	NA	NA	NA	NA	NA	inter
CUST_47568_PI429285431	0.9238269	A	0.9032977	A	1.014331482027	0	lncRNA	51573-1_{1..1053}	"gi|361050360|ref|NR_045617.1| Homo sapiens small muscle protein, X-linked (SMPX), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|361050360|ref|NR_045617.1| Homo sapiens small muscle protein, X-linked (SMPX), transcript variant 2, non-coding RNA"	ChrX	 21724090	 21725142	-	23676	NR_045617.1	NA	NA	NA	NA	NA	inter
CUST_20860_PI429285431	0.8897685	A	0.9027039	A	0.991073939893461	0	lncRNA	22491-1_{1..748}	lnc-KRR1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KRR1-2:1	chr12	 76377501	 76378248	-	lnc-KRR1-2	lnc-KRR1-2:1	ENSG00000258077.1	RP11-114H23.1	NA	NA	NA	inter
CUST_913_PI429285431	1.1699694	A	1.6527635	A	0.715590381070775	0	lncRNA	902-1_{1..905}	"transcript_id ""ENST00000449673.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449673.1"" | genecode_v17"	chr2	 66554493	 66555397	+	ENSG00000225815.2	ENST00000449673.1	AC092669.6	AC092669.6-002	NA	NA	NA	inter
CUST_3896_PI429285431	0.89697504	A	0.9078088	A	0.992518734827085	0	lncRNA	3865-1_{1..492}	"transcript_id ""ENST00000530960.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530960.1"" | genecode_v17"	chr11	 29181503	 29181994	+	ENSG00000254526.1	ENST00000530960.1	RP11-466I1.1	RP11-466I1.1-001	NA	NA	NA	inter
CUST_694_PI429285431	6.233903	P	6.3257794	P	0.938301580160585	0	lncRNA	687-1_{1..1240}	"transcript_id ""ENST00000591018.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591018.1"" | genecode_v17"	chr2	  6772573	  6773812	-	ENSG00000236172.2	ENST00000591018.1	AC097517.2	AC097517.2-021	NA	NA	NA	inter
CUST_4103_PI429285431	3.0319004	A	2.9109914	A	1.0874197981726	0	lncRNA	4064-1_{1..445}	"transcript_id ""ENST00000527774.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527774.1"" | genecode_v17"	chr11	123184411	123184855	-	ENSG00000254823.1	ENST00000527774.1	RP11-109E10.1	RP11-109E10.1-002	NA	NA	NA	inter
CUST_23628_PI429285431	2.0555267	A	2.1359925	A	0.945752244331249	0	lncRNA	25194-1_{1..555}	lnc-DYDC1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DYDC1-4:2	chr10	 83992496	 83993050	-	lnc-DYDC1-4	lnc-DYDC1-4:2	ENSG00000225738.2	NRG3-AS1	NRG3	NA	chr10:83982496-84002675	inner
CUST_48360_PI429285431	1.8433989	A	2.2984009	A	0.729509160804951	0	lncRNA	52216-1_{1..2407}	hg19_lincRNAsTranscripts_TCONS_l2_00002093 range=chr1:87099956-87117349 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002093 range=chr1:87099956-87117349 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 87099956	 87102362	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2276_PI429285431	7.974605	P	7.4673815	P	1.42131221353341	0	lncRNA	2268-1_{1..469}	"transcript_id ""ENST00000511592.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511592.1"" | genecode_v17"	chr5	 99989816	 99990284	-	ENSG00000250806.2	ENST00000511592.1	CTC-293G12.1	CTC-293G12.1-001	NA	NA	NA	inter
CUST_27601_PI429285431	5.291378	P	4.7215414	P	1.48435544264063	0	lncRNA	29180-1_{1..693}	n324804|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194141|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194141|-1.2664000|-0.2490549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324804|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194141|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194141|-1.2664000|-0.2490549	chr21	 35017974	 35018666	-	NA	NA	NA	NA	ITSN1	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-32.61;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-22.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chr21:35014784-35041348"	NA	inner
CUST_24399_PI429285431	3.61826	P	3.1545608	A	1.37907335688627	0	lncRNA	25952-1_{1..638}	lnc-LEF1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LEF1-3:1	chr4	108899876	108900513	-	lnc-LEF1-3	lnc-LEF1-3:1	ENSG00000245293.2	RP11-286E11.1	NA	"hg19_refFlat_SGMS2:range=chr4:108816710-1088317095'pad=0,hg19_refFlat_SGMS2:range=chr4:108816710-1088317095'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.90"	NA	inter
CUST_12797_PI429285431	1.1154456	A	2.4479504	A	0.39707823778591	0	lncRNA	14424-1_{1..248}	lnc-SEPT9-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEPT9-3:3	chr17	 75556552	 75556799	+	lnc-SEPT9-3	lnc-SEPT9-3:3	XLOC_012317	linc-TNRC6C-3	LOC100652922	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30chr17:75548387-75550976"	NA	inter
CUST_24272_PI429285431	1.851456	A	0.90206397	A	1.93105871370881	0	lncRNA	25823-1_{1..534}	lnc-LETM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LETM2-1:1	chr8	 38283468	 38284001	+	lnc-LETM2-1	lnc-LETM2-1:1	ENSG00000255201.1	RP11-350N15.4	FGFR1	"hg19_refFlat_FGFR1:range=chr8:38271146-383186245'pad=0,hg19_refFlat_FGFR1:range=chr8:38271146-383186245'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FGFR1:range=chr8:38271146-383149645'pad=0,hg19_refFlat_FGFR1:range=chr8:38271146-383149645'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FGFR1:range=chr8:38271146-382978905'pad=0,hg19_refFlat_FGFR1:range=chr8:38271146-382978905'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10chr8:38273468-38293614"	NA	inner
CUST_29919_PI429285431	1.5852921	A	1.904502	A	0.801508708136983	0	lncRNA	31683-1_{1..234}	n334059|M28641|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195263|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195263|-0.8326510|-0.3694663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334059|M28641|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195263|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195263|-0.8326510|-0.3694663	chr11	 15099943	 15100176	+	NA	NA	NA	NA	CALCB	NA	chr11:15095146-15100177	inner
CUST_12737_PI429285431	0.9238598	A	1.2780461	A	0.782310752828973	0	lncRNA	14362-1_{1..261}	lnc-IFT74-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IFT74-4:1	chr9	 25617639	 25617899	+	lnc-IFT74-4	lnc-IFT74-4:1	XLOC_007305	linc-IFT74-2	NA	NA	NA	inter
CUST_24465_PI429285431	0.8882836	A	0.894574	A	0.995649318729567	0	lncRNA	26018-1_{1..397}	lnc-AC007405.2.1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC007405.2.1-4:4	chr2	171199969	171200365	-	lnc-AC007405.2.1-4	lnc-AC007405.2.1-4:4	ENSG00000244445.1	AC068280.1	MYO3B	NA	chr2:171189969-171210021	inter
CUST_38373_PI429285431	4.0947714	P	2.187109	A	3.75200668935762	0	lncRNA	39413-2_{3001..3105}	n382184|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001xsm.2||-0.9764730|-0.4064650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382184|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001xsm.2||-0.9764730|-0.4064650	chr14	 76665780	 76665884	+	NA	NA	NA	NA	C14orf118	NA	chr14:76652780-76669134	inner
CUST_597_PI429285431	3.5949953	P	2.025583	A	2.96783790881576	0	lncRNA	589-1_{1..478}	"transcript_id ""ENST00000434311.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434311.1"" | genecode_v17"	chr1	229576031	229576508	-	ENSG00000226920.1	ENST00000434311.1	RP5-1068B5.3	RP5-1068B5.3-001	NUP133	NA	chr1:229577044-229586767	inter
CUST_49223_PI429285431	0.8866121	A	0.8975894	A	0.992419989736746	0	lncRNA	53043-1_{1..2020}	hg19_lincRNAsTranscripts_TCONS_l2_00021467 range=chr4:187333578-187348086 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021467 range=chr4:187333578-187348086 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	187333578	187335597	-	NA	NA	NA	NA	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30"	NA	inter
CUST_13386_PI429285431	0.9172742	A	2.0988307	A	0.440875588030052	0	lncRNA	15021-1_{1..845}	lnc-RP11-17M16.1.1-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-17M16.1.1-5:5	chr18	 74334714	 74335558	+	lnc-RP11-17M16.1.1-5	lnc-RP11-17M16.1.1-5:5	XLOC_012728	linc-ZNF236-2	NA	NA	NA	inter
CUST_18315_PI429285431	3.7417247	P	3.6114755	P	1.09448273742975	0	lncRNA	20042-1_{1..1605}	lnc-RP11-826N14.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-826N14.2.1-2:1	chr5	175626239	175627843	-	lnc-RP11-826N14.2.1-2	lnc-RP11-826N14.2.1-2:1	ENSG00000248596	RP11-844P9.2	NA	NA	NA	inter
CUST_3751_PI429285431	4.702291	P	4.744014	P	0.97149400620365	0	lncRNA	3720-1_{1..370}	"transcript_id ""ENST00000436500.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436500.1"" | genecode_v17"	chr10	 82409553	 82409922	+	ENSG00000231082.1	ENST00000436500.1	RP11-514F8.2	RP11-514F8.2-001	SH2D4B	NA	chr10:82399553-82406316	inter
CUST_11758_PI429285431	4.958528	P	5.2526464	P	0.815570557837162	0	lncRNA	13338-1_{1..832}	lnc-DRD5-10:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DRD5-10:3	chr4	 11779810	 11780641	+	lnc-DRD5-10	lnc-DRD5-10:3	XLOC_003457	linc-CPEB2-10	NA	NA	NA	inter
CUST_7078_PI429285431	1.095947	A	1.6696618	A	0.671884521611619	0	lncRNA	7017-9_{24001..27000}	"transcript_id ""ENST00000604411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000604411.1"" | genecode_v17"	chrX	 73036040	 73039039	+	ENSG00000270641.1	ENST00000604411.1	TSIX	TSIX-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
LNCA_21_P0011792	2.7737694	A	2.3084652	A	1.38060843141271	0	lncRNA	ENST00000492300	NA	NA	NA	NA	XLOC_l2_007191	NA	ENST00000492300	THC2708070	NA	"BROAD Institute lincRNA (XLOC_l2_007191), lincRNA [TCONS_l2_00015236]"	chr2:9256910-9256969	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000492300	ENST00000492300	chr2	  9256910	  9256969	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23444_PI429285431	0.91936576	A	1.2042346	A	0.820816228435465	0	lncRNA	25011-1_{1..557}	lnc-SPACA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPACA3-1:1	chr17	 31458593	 31459149	+	lnc-SPACA3-1	lnc-SPACA3-1:1	ENSG00000266535.1	RP11-40A13.1	ACCN1	"hg19_refFlat_ASIC2:range=chr17:31340983-324835515'pad=0,hg19_refFlat_ASIC2:range=chr17:31340983-324835515'pad=0 3'pad=0 strand=- repeatMasking=none,-96.20;hg19_refFlat_ASIC2:range=chr17:31340983-316191335'pad=0,hg19_refFlat_ASIC2:range=chr17:31340983-316191335'pad=0 3'pad=0 strand=- repeatMasking=none,-96.20chr17:31448593-31468761"	NA	inner
CUST_1203_PI429285431	4.2184157	P	4.5957627	P	0.769851985571547	0	lncRNA	1194-1_{1..564}	"transcript_id ""ENST00000451266.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451266.1"" | genecode_v17"	chr2	199166132	199166695	-	ENSG00000236653.1	ENST00000451266.1	AC005235.1	AC005235.1-002	NA	"hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-23.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10"	NA	inter
CUST_52177_PI429285431	1.6781693	A	1.082788	A	1.51087185172601	0	lncRNA	55697-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00017651 range=chr22:24647047-24658668 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017651 range=chr22:24647047-24658668 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 24650047	 24653046	+	NA	NA	NA	NA	SPECC1L	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0,hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80chr22:24653368-24668668"	NA	inter
LNCA_21_P0011920	3.677049	P	3.584868	P	1.06598046520403	0	lncRNA	TCONS_l2_00014590	NA	NA	NA	NA	XLOC_l2_008031	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008031), lincRNA [TCONS_l2_00014590]"	chr2:60909808-60909749	hs|2p16.1	Agilent_HUMAN_G3V2	TCONS_l2_00014590	TCONS_l2_00014590	chr2	 60909749	 60909808	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27199_PI429285431	4.8945594	P	5.4265246	P	0.691611997038199	0	lncRNA	28741-1_{1..400}	n324331|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042821|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042821|-1.0497800|-0.2475485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324331|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042821|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042821|-1.0497800|-0.2475485	chr6	156860571	156860970	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47166_PI429285431	5.829328	P	6.408149	P	0.6695106917674	0	lncRNA	51244-1_{1..3000}	"gi|379030590|ref|NR_046402.1| Homo sapiens polymerase (DNA directed), delta 1, catalytic subunit (POLD1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379030590|ref|NR_046402.1| Homo sapiens polymerase (DNA directed), delta 1, catalytic subunit (POLD1), transcript variant 3, non-coding RNA"	Chr19	 50887580	 50890579	+	5424	NR_046402.1	NA	NA	NA	NA	NA	inter
CUST_29659_PI429285431	6.1012106	P	6.22268	P	0.919250906993579	0	lncRNA	31421-1_{1..258}	n333286|AY048588|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083821|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083821|0.5102170|-0.0095144	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333286|AY048588|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083821|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083821|0.5102170|-0.0095144	chr19	 49925771	 49926028	-	NA	NA	NA	NA	SLC17A7	NA	chr19:49932655-49936599	inner
CUST_29440_PI429285431	2.8753488	A	3.3756468	P	0.706960737806894	0	lncRNA	31196-1_{1..267}	n332827|AF069136|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000065646|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000065646|-1.0474500|-0.2204950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332827|AF069136|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000065646|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000065646|-1.0474500|-0.2204950	chrX	 53248009	 53248275	+	NA	NA	NA	NA	KDM5C	NA	chrX:53238009-53254604	inner
CUST_45311_PI429285431	1.1265734	A	1.8143296	A	0.620818648597143	0	lncRNA	49753-1_{1..1605}	"gi|383792202|ref|NR_047537.1| Homo sapiens CDKN2B antisense RNA 1 (CDKN2B-AS1), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|383792202|ref|NR_047537.1| Homo sapiens CDKN2B antisense RNA 1 (CDKN2B-AS1), transcript variant 7, non-coding RNA"	Chr9	 21994790	 21996394	+	100048912	NR_047537.1	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30"	NA	inter
CUST_33498_PI429285431	1.0616814	A	0.89359856	A	1.12356441659928	0	lncRNA	35070-1_{1..2925}	n340237|AK128168|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2698|NULL|-1.0193000|-0.3023937	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340237|AK128168|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2698|NULL|-1.0193000|-0.3023937	chr4	141419555	141422479	+	NA	NA	NA	NA	LOC152586	NA	chr4:141409555-141419501	inter
CUST_1130_PI429285431	0.89252734	A	1.8935643	A	0.499640746174989	0	lncRNA	1119-1_{1..556}	"transcript_id ""ENST00000433174.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433174.1"" | genecode_v17"	chr2	150672978	150673533	-	ENSG00000162947.4	ENST00000433174.1	AC007364.1	AC007364.1-002	NA	NA	NA	inter
LNCA_21_P0009508	0.87315637	A	0.87403667	A	0.999390008657364	0	lncRNA	THC2653247	NA	NA	NA	NA	XLOC_012733	NA	NA	THC2653247	NA	"BROAD Institute lincRNA (XLOC_012733), lincRNA [TCONS_00026382]"	chr18:076558214-076558273	hs|18q23	Agilent_HUMAN_G3V2	THC2653247	THC2653247	chr18	 76558214	 76558273	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014522	2.5323324	A	1.7294567	A	1.74457509562565	0	lncRNA	XR_110202	XR_110202	XR_110202	NA	NA	LOC100506090	uncharacterized LOC100506090	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506090 (LOC100506090), miscRNA [XR_110202]"	chr6:99879235-99879294	hs|6q16.2	Agilent_HUMAN_G3V2	XR_110202	XR_110202	chr6	 99879235	 99879294	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10142_PI429285431	1.1872671	A	1.3654532	A	0.883813516459349	0	lncRNA	11664-1_{1..403}	lnc-MON2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MON2-2:1	chr12	 63013626	 63014028	+	lnc-MON2-2	lnc-MON2-2:1	XLOC_009784	linc-TMEM5	NA	NA	NA	inter
CUST_26427_PI429285431	7.7728424	P	7.4929805	P	1.21407866282115	0	lncRNA	27934-1_{1..759}	lnc-CTDSP2-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTDSP2-2:9	chr12	 58329253	 58330011	-	lnc-CTDSP2-2	lnc-CTDSP2-2:9	ENSG00000257698.1	RP11-620J15.3	XRCC6BP1	NA	chr12:58335445-58339842	inter
CUST_10019_PI429285431	1.454162	A	1.5660534	A	0.925374083675593	0	lncRNA	11544-1_{1..977}	lnc-NCOA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCOA1-1:1	chr2	 24633262	 24634238	+	lnc-NCOA1-1	lnc-NCOA1-1:1	XLOC_001397	linc-NCOA1-1	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80"	NA	inter
CUST_27119_PI429285431	0.8936847	A	0.8989423	A	0.996362341751332	0	lncRNA	28653-1_{1..442}	n324233|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327610|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327610|-1.3844000|-0.3064609	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324233|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327610|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327610|-1.3844000|-0.3064609	chr7	 17469593	 17470034	-	NA	NA	NA	NA	NA	"hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50"	NA	inter
CUST_37772_PI429285431	1.8460448	A	3.0172915	P	0.444037461285177	0	lncRNA	38870-1_{1..773}	n346282|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1832|NULL|-1.3521200|-0.1859647	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346282|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1832|NULL|-1.3521200|-0.1859647	chr12	  9585103	  9585875	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33929_PI429285431	4.4544888	P	4.8831654	P	0.742942982586404	0	lncRNA	35470-1_{1..854}	n340727|X84838|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3190|NULL|-0.5091170|-0.0837733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340727|X84838|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3190|NULL|-0.5091170|-0.0837733	chr7	   302534	   303387	+	NA	NA	NA	NA	FAM20C	NA	chr7:292534-300711	inter
CUST_10103_PI429285431	3.9586298	P	4.179141	P	0.85826126896724	0	lncRNA	11626-1_{1..227}	lnc-FRMD4A-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRMD4A-1:4	chr10	 13569825	 13570051	-	lnc-FRMD4A-1	lnc-FRMD4A-1:4	XLOC_008735	linc-BEND7-1	NA	NA	NA	inter
CUST_1152_PI429285431	5.8291526	P	6.3583975	P	0.692917308919213	0	lncRNA	1141-1_{1..372}	"transcript_id ""ENST00000428888.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428888.1"" | genecode_v17"	chr2	166651367	166651738	-	ENSG00000229195.1	ENST00000428888.1	AC009495.4	AC009495.4-001	GALNT3	NA	chr2:166641367-166650803	inter
CUST_41088_PI429285431	1.4485267	A	1.4366431	A	1.00827110194916	0	lncRNA	41786-1_{1..68}	ENST00000362215 ncrna:miRNA chromosome:GRCh37:7:25989539:25989606:-1 gene:ENSG00000199085 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362215 ncrna:miRNA chromosome:GRCh37:7:25989539:25989606:-1 gene:ENSG00000199085 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 25989539	 25989606	-	ENSG00000199085	ENST00000362215	NA	NA	NA	NA	NA	inter
CUST_40858_PI429285431	5.4895196	P	6.2718306	P	0.581434668105278	0	lncRNA	41558-1_{1..3000}	n410641|NR_037882|lncRNA|Homosapiens||RefGeneNoncode|NR_037882||14.7387000|-0.1166168	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410641|NR_037882|lncRNA|Homosapiens||RefGeneNoncode|NR_037882||14.7387000|-0.1166168	chr20	 62289162	 62292161	+	NA	NA	NA	NA	STMN3	NA	chr20:62279162-62284780	inner
CUST_43626_PI429285431	2.5141892	A	3.2660382	P	0.593841984388579	0	lncRNA	48385-1_{1..2600}	"gi|399789128|ref|NR_073074.1| Homo sapiens hyperpolarization activated cyclic nucleotide-gated potassium channel 3 (HCN3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|399789128|ref|NR_073074.1| Homo sapiens hyperpolarization activated cyclic nucleotide-gated potassium channel 3 (HCN3), transcript variant 2, non-coding RNA"	NW_003315906.1	    82450	    85049	+	57657	NR_073074.1	NA	NA	NA	NA	NA	Unknown
CUST_22595_PI429285431	0.88551855	A	0.88966453	A	0.997130350989134	0	lncRNA	24179-1_{1..1676}	lnc-C5orf43-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C5orf43-4:1	chr5	 60993739	 60995414	-	lnc-C5orf43-4	lnc-C5orf43-4:1	ENSG00000248529.1	RP11-2O17.2	C5orf64	NA	chr5:60983739-61002362	inner
CUST_2076_PI429285431	1.4305332	A	1.9535873	A	0.695897099798265	0	lncRNA	2067-1_{1..2702}	"transcript_id ""ENST00000506655.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506655.1"" | genecode_v17"	chr5	  8839871	  8842572	+	ENSG00000250198.1	ENST00000506655.1	RP11-143A12.3	RP11-143A12.3-003	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
CUST_25199_PI429285431	0.88800555	A	0.8949357	A	0.995207904968553	0	lncRNA	26730-1_{1..254}	lnc-COL19A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COL19A1-1:1	chr6	 70951687	 70951940	+	lnc-COL19A1-1	lnc-COL19A1-1:1	ENSG00000253809.1	RP1-149L1.1	COL9A1	"hg19_refFlat_COL9A1:range=chr6:70926600-710126275'pad=0,hg19_refFlat_COL9A1:range=chr6:70926600-710126275'pad=0 3'pad=0 strand=- repeatMasking=none,-103.10;hg19_refFlat_COL9A1:range=chr6:70926600-709927555'pad=0,hg19_refFlat_COL9A1:range=chr6:70926600-709927555'pad=0 3'pad=0 strand=- repeatMasking=none,-103.10chr6:70941687-70961859"	NA	inner
CUST_19594_PI429285431	1.2542186	A	2.1634235	A	0.53247847061477	0	lncRNA	21250-1_{1..539}	lnc-PTPN1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPN1-1:2	chr20	 49278558	 49279096	+	lnc-PTPN1-1	lnc-PTPN1-1:2	ENSG00000234693.1	RP4-530I15.6	NA	NA	NA	inter
CUST_677_PI429285431	8.48275	P	8.336214	P	1.10690852298692	0	lncRNA	670-1_{1..711}	"transcript_id ""ENST00000593202.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593202.1"" | genecode_v17"	chr2	  6755722	  6756432	-	ENSG00000236172.2	ENST00000593202.1	AC097517.2	AC097517.2-047	NA	NA	NA	inter
LNCA_21_P0006038	0.8713368	A	1.7383159	A	0.548293737245007	0	lncRNA	ENST00000444985	NA	AK093363	NA	Hs.147110	XLOC_007502	NA	ENST00000444985	THC2619600	NA	"BROAD Institute lincRNA (XLOC_007502), lincRNA [TCONS_00015732]"	chr9:109441982-109442041	hs|9q31.2	Agilent_HUMAN_G3V2	ENST00000444985	ENST00000444985	chr9	109441982	109442041	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003998	0.8698946	A	0.8722637	A	0.998359212580461	0	lncRNA	XR_108599	XR_108599	XR_108599	NA	NA	LOC100506329	uncharacterized LOC100506329	ENST00000509423	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506329 (LOC100506329), miscRNA [XR_108599]"	chr5:50757755-50757814	hs|5q11.2	Agilent_HUMAN_G3V2	XR_108599	XR_108599	chr5	 50757755	 50757814	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39172_PI429285431	3.0353394	A	3.615496	P	0.668891167424138	0	lncRNA	40149-1_{1..482}	n385888|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ftj.2||-0.9824060|-0.3169258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385888|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ftj.2||-0.9824060|-0.3169258	chrY	 19687041	 19687522	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45121_PI429285431	5.7339964	P	5.8721895	P	0.908656487617902	0	lncRNA	49602-1_{1..2165}	"gi|341915412|ref|XR_132523.1| PREDICTED: Homo sapiens putative uncharacterized protein LOC65996-like (LOC100506458), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915412|ref|XR_132523.1| PREDICTED: Homo sapiens putative uncharacterized protein LOC65996-like (LOC100506458), misc_RNA"	NA	NA	NA	NA	NA	XR_132523.1	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-11.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10"	NA	Unknown
CUST_34361_PI429285431	4.596525	P	4.13023	P	1.3815569178367	0	lncRNA	35849-1_{1..2247}	n341230|BC035135|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3698|NULL|-1.1800400|-0.3173766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341230|BC035135|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3698|NULL|-1.1800400|-0.3173766	chr7	 39987119	 39989365	-	NA	NA	NA	NA	CDK13	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20chr7:39989959-39999350"	NA	inter
CUST_7321_PI429285431	7.034714	P	6.735075	P	1.23083638737989	0	lncRNA	8569-1_{1..328}	"transcript_id ""ENST00000411236.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411236.1"" | genecode_v17"	chr16	 51705147	 51705474	-	ENSG00000223168.1	ENST00000411236.1	RN7SKP142	RN7SKP142-201	NA	NA	NA	inter
LNCA_21_P0007643	3.3712256	P	3.3547244	P	1.01150342153623	0	lncRNA	TCONS_00020594	NA	NA	NA	NA	XLOC_009911	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009911), lincRNA [TCONS_00020594]"	chr12:121345699-121345758	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00020594	TCONS_00020594	chr12	121345699	121345758	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39_PI429285431	3.4403088	P	2.5387075	A	1.86813834785333	0	lncRNA	38-1_{1..721}	"transcript_id ""ENST00000525832.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525832.2"" | genecode_v17"	chr11	 91536521	 91537241	+	ENSG00000255332.3	ENST00000525832.2	RP11-201M22.1	RP11-201M22.1-001	NA	NA	NA	inter
CUST_38526_PI429285431	1.670305	A	2.4140255	A	0.597197280128946	0	lncRNA	39538-1_{1..978}	n383183|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ido.2||2.4773300|-0.1253088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n383183|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ido.2||2.4773300|-0.1253088	chr17	 41373438	 41374415	-	NA	NA	NA	NA	NBR1	NA	chr17:41363438-41363707	inter
CUST_17355_PI429285431	1.2608428	A	1.623977	A	0.777473711640757	0	lncRNA	19075-1_{1..584}	lnc-TNFAIP3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TNFAIP3-3:1	chr6	137995525	137996108	+	lnc-TNFAIP3-3	lnc-TNFAIP3-3:1	XLOC_005478	linc-TNFAIP3-2	NA	NA	NA	inter
CUST_43338_PI429285431	6.226774	P	6.409875	P	0.880807708501108	0	lncRNA	48165-1_{1..3000}	"gi|366393019|ref|NR_039983.2| Homo sapiens uncharacterized LOC729737 (LOC729737), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|366393019|ref|NR_039983.2| Homo sapiens uncharacterized LOC729737 (LOC729737), non-coding RNA"	Chr1	   134773	   137772	-	729737	NR_039983.2	NA	NA	NA	NA	NA	inter
CUST_19200_PI429285431	2.1064768	A	2.5912335	A	0.714617574752853	0	lncRNA	20870-1_{1..463}	lnc-PTPRZ1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPRZ1-3:1	chr7	122018820	122019282	+	lnc-PTPRZ1-3	lnc-PTPRZ1-3:1	ENSG00000240499.1	RP11-560I19.6	CADPS2	NA	chr7:122008820-122029000	inner
CUST_39661_PI429285431	12.8983755	P	12.832848	P	1.04646749513716	0	lncRNA	40600-1_{1..2783}	n405268|NR_001284_6|lncRNA|Homosapiens||RefGeneNoncode|NR_001284_6||-0.9670570|-0.3081823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405268|NR_001284_6|lncRNA|Homosapiens||RefGeneNoncode|NR_001284_6||-0.9670570|-0.3081823	chr6	  3479582	  3482364	-	NA	NA	NA	NA	NA	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70"	NA	inter
CUST_33533_PI429285431	0.90413004	A	0.91646034	A	0.991489706639354	0	lncRNA	35101-1_{1..2048}	n340274|BC040577|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2735|NULL|-1.1670600|-0.1583731	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340274|BC040577|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2735|NULL|-1.1670600|-0.1583731	chr4	174053083	174055130	-	NA	NA	NA	NA	GALNT7	"hg19_refFlat_GALNT7:range=chr4:174089987-1742428685'pad=0,hg19_refFlat_GALNT7:range=chr4:174089987-1742428685'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.80chr4:174089904-174100803"	NA	inner
CUST_49920_PI429285431	8.325999	P	8.479705	P	0.898938298331361	0	lncRNA	53670-1_{1..400}	hg19_lincRNAsTranscripts_TCONS_l2_00026781 range=chr7:97598778-97601255 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026781 range=chr7:97598778-97601255 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 97598778	 97599177	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005555	0.8959519	A	0.9141311	A	0.987478197210442	0	lncRNA	ENST00000458087	XR_108768	XR_108768	NA	NA	XLOC_006043	NA	ENST00000458087	THC2631423	NA	"PREDICTED: Homo sapiens hypothetical LOC100506725, transcript variant 2 (LOC100506725), miscRNA [XR_108768]"	chr7:35759023-35759082	hs|7p14.2	Agilent_HUMAN_G3V2	ENST00000458087	ENST00000458087	chr7	 35759023	 35759082	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008449	0.89175045	A	0.90871763	A	0.988308134356156	0	lncRNA	TCONS_00022770	NA	NA	NA	NA	XLOC_011054	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011054), lincRNA [TCONS_00022770]"	chr14:65708938-65708879	hs|14q23.3	Agilent_HUMAN_G3V2	TCONS_00022770	TCONS_00022770	chr14	 65708879	 65708938	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006130	1.3359108	A	1.4398954	A	0.930459589809801	0	lncRNA	TCONS_00015933	NA	NA	NA	NA	XLOC_007304	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007304), lincRNA [TCONS_00015933]"	chr9:24592246-24592305	hs|9p21.3	Agilent_HUMAN_G3V2	TCONS_00015933	TCONS_00015933	chr9	 24592246	 24592305	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009049	1.2297021	A	2.6890461	A	0.363658448892971	0	lncRNA	TCONS_00025036	NA	NA	NA	NA	XLOC_011980	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011980), lincRNA [TCONS_00025036]"	chr16:66165646-66164986	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00025036	TCONS_00025036	chr16	 66164986	 66165646	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007474	0.88925046	A	0.9052038	A	0.989002902440273	0	lncRNA	THC2659198	NA	NA	NA	NA	XLOC_009608	NA	NA	THC2659198	NA	"BROAD Institute lincRNA (XLOC_009608), lincRNA [TCONS_00019809]"	chr11:133523719-133523660	hs|11q25	Agilent_HUMAN_G3V2	THC2659198	THC2659198	chr11	133523660	133523719	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011800	1.7339168	A	0.8938662	A	1.79011292582833	0	lncRNA	TCONS_l2_00013594	NA	NA	NA	NA	XLOC_l2_007286	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007286), lincRNA [TCONS_l2_00013594]"	chr2:40984817-40984876	hs|2p22.1	Agilent_HUMAN_G3V2	TCONS_l2_00013594	TCONS_l2_00013594	chr2	 40984817	 40984876	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012098	0.8811612	A	0.8923434	A	0.992279050445654	0	lncRNA	ENST00000438143	NA	NA	NA	NA	XLOC_l2_008363	NA	ENST00000438143	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008363), lincRNA [TCONS_l2_00016031]"	chr2:177626346-177626287	hs|2q31.1	Agilent_HUMAN_G3V2	ENST00000438143	ENST00000438143	chr2	177626287	177626346	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1560_PI429285431	4.0266857	P	4.547518	P	0.696969630930273	0	lncRNA	1548-1_{1..827}	"transcript_id ""ENST00000434969.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000434969.1"" | genecode_v17"	chr3	176321931	176322757	-	ENSG00000223715.1	ENST00000434969.1	RP11-71G7.1	RP11-71G7.1-001	NA	NA	NA	inter
CUST_20010_PI429285431	4.8965855	P	4.9005237	P	0.997273970159294	0	lncRNA	21663-1_{1..1207}	lnc-RP4-695O20__B.10.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP4-695O20__B.10.1-1:1	chr22	 46410377	 46411583	+	lnc-RP4-695O20__B.10.1-1	lnc-RP4-695O20__B.10.1-1:1	ENSG00000258242.1	CITF22-92A6.1	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60"	NA	inter
CUST_17505_PI429285431	0.87777305	A	0.8834284	A	0.996087683223385	0	lncRNA	19230-1_{1..1129}	lnc-ZNF608-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ZNF608-1:1	chr5	124211732	124212860	-	lnc-ZNF608-1	lnc-ZNF608-1:1	XLOC_004982	linc-ZNF608-5	NA	NA	NA	inter
CUST_240_PI429285431	4.7182364	P	4.860335	P	0.906200002535171	0	lncRNA	232-1_{1..545}	"transcript_id ""ENST00000451914.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451914.1"" | genecode_v17"	chr1	 56880635	 56881179	+	ENSG00000223956.1	ENST00000451914.1	RP4-710M16.2	RP4-710M16.2-001	NA	NA	NA	inter
CUST_36170_PI429285431	0.9336237	A	0.87705165	A	1.03999172558774	0	lncRNA	37442-1_{1..1742}	n344730|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_279|NULL|-1.6198000|-0.2738816	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344730|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_279|NULL|-1.6198000|-0.2738816	chr13	 22615058	 22616799	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11683_PI429285431	3.2379725	P	3.7978942	P	0.678338978503952	0	lncRNA	13261-1_{1..369}	lnc-PRDM11-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRDM11-3:6	chr11	 45377947	 45378315	+	lnc-PRDM11-3	lnc-PRDM11-3:6	XLOC_009120	linc-SLC35C1-5	NA	NA	NA	inter
CUST_34790_PI429285431	4.3600874	P	3.9186578	P	1.3579492844261	0	lncRNA	36227-1_{1..2323}	n341697|AL713639|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4168|NULL|-1.0566600|-0.2516428	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n341697|AL713639|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4168|NULL|-1.0566600|-0.2516428	chr9	 72042448	 72044770	-	NA	NA	NA	NA	APBA1	NA	chr9:72042449-72054751	inner
CUST_38794_PI429285431	2.7298522	A	3.080446	P	0.784261236751408	0	lncRNA	39789-1_{1..1985}	n384487|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hvp.1||-0.1533430|-0.3160553	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384487|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003hvp.1||-0.1533430|-0.3160553	chr4	100871635	100873619	+	NA	NA	NA	NA	DNAJB14	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.81;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20chr4:100861635-100867879"	NA	inter
CUST_26276_PI429285431	6.2736073	P	6.2792745	P	0.996079501597861	0	lncRNA	27782-1_{1..1310}	lnc-SLC16A6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC16A6-1:1	chr17	 66242770	 66244079	-	lnc-SLC16A6-1	lnc-SLC16A6-1:1	ENSG00000265100.1	RP11-147L13.2	AMZ2	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60chr17:66244145-66253305"	NA	inter
CUST_36862_PI429285431	1.8956473	A	1.2208436	A	1.59637954688497	0	lncRNA	38022-1_{1..2470}	n345332|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_881|NULL|-1.2869000|-0.2538649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345332|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_881|NULL|-1.2869000|-0.2538649	chr16	 67526664	 67529133	+	NA	NA	NA	NA	AGRP	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-59.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-63.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00chr16:67516664-67517716"	NA	inter
LNCA_21_P0010954	0.87434995	A	0.87849325	A	0.99713220329454	0	lncRNA	ENST00000447757	NA	NA	NA	NA	XLOC_l2_002100	NA	ENST00000447757	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002100), lincRNA [TCONS_l2_00004264]"	chr10:107568604-107568545	hs|10q25.1	Agilent_HUMAN_G3V2	ENST00000447757	ENST00000447757	chr10	107568545	107568604	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36956_PI429285431	4.275496	P	4.3323827	P	0.961336422610888	0	lncRNA	38106-2_{3001..6000}	n345422|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_971|NULL|-1.3087300|-0.2114874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n345422|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_971|NULL|-1.3087300|-0.2114874	chr1	201486784	201489783	+	NA	NA	NA	NA	CSRP1	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50chr1:201473784-201476387"	NA	inter
LNCA_21_P0009045	0.8732023	A	0.8736856	A	0.999665058073211	0	lncRNA	TCONS_00024696	NA	NA	NA	NA	XLOC_011976	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011976), lincRNA [TCONS_00024696]"	chr16:65175325-65175266	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024696	TCONS_00024696	chr16	 65175266	 65175325	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001583	0.87332535	A	0.9214217	A	0.967211732481679	0	lncRNA	TCONS_00001691	NA	NA	NA	NA	XLOC_001046	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001046), lincRNA [TCONS_00001691]"	chr1:156584387-156584328	hs|1q23.1	Agilent_HUMAN_G3V2	TCONS_00001691	TCONS_00001691	chr1	156584328	156584387	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5765_PI429285431	1.5328373	A	2.4302177	P	0.53686066138437	0	lncRNA	5690-1_{1..3000}	"transcript_id ""ENST00000577087.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577087.2"" | genecode_v17"	chr17	 19622372	 19625371	+	ENSG00000262681.2	ENST00000577087.2	RP11-311F12.1	RP11-311F12.1-001	SLC47A2	NA	chr17:19612372-19620043	inter
CUST_26736_PI429285431	8.785644	P	8.763441	P	1.01550898194597	0	lncRNA	28231-1_{1..200}	n5781|X94290|snoRNA|Homosapiens|u19|NONCODEv2.0|n5781|NULL|-1.5906100|-0.3315782	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n5781|X94290|snoRNA|Homosapiens|u19|NONCODEv2.0|n5781|NULL|-1.5906100|-0.3315782	chr5	138614468	138614667	+	NA	NA	NA	NA	MATR3	NA	chr5:138609441-138624668	inter
CUST_15977_PI429285431	1.7169604	A	1.8107775	A	0.937040234135597	0	lncRNA	17675-1_{1..426}	lnc-HS3ST4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HS3ST4-1:1	chr16	 26335466	 26335891	+	lnc-HS3ST4-1	lnc-HS3ST4-1:1	XLOC_011679	linc-C16orf82	NA	NA	NA	inter
LNCA_21_P0007963	0.87505823	A	0.8751373	A	0.999945194354317	0	lncRNA	ENST00000455487	NA	NA	NA	NA	XLOC_010491	NA	ENST00000455487	NA	NA	"BROAD Institute lincRNA (XLOC_010491), lincRNA [TCONS_00021594]"	chr13:109940016-109940075	hs|13q33.3	Agilent_HUMAN_G3V2	ENST00000455487	ENST00000455487	chr13	109940016	109940075	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16910_PI429285431	3.3934073	P	3.633311	P	0.846801834560762	0	lncRNA	18620-1_{1..508}	lnc-ARFGEF2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARFGEF2-3:1	chr20	 46995217	 46995724	+	lnc-ARFGEF2-3	lnc-ARFGEF2-3:1	XLOC_013551	linc-ARFGEF2-4	NA	NA	NA	inter
LNCA_21_P0014130	0.8750433	A	0.8755507	A	0.999648358960792	0	lncRNA	XR_108517	XR_108517	XR_108517	NA	NA	PEX5L-AS2	PEX5L antisense RNA 2 (non-protein coding)	ENST00000462801	THC2673635	NA	"PREDICTED: Homo sapiens hypothetical LOC100505598 (LOC100505598), miscRNA [XR_108517]"	chr3:179639606-179639665	hs|3q26.33	Agilent_HUMAN_G3V2	XR_108517	XR_108517	chr3	179639606	179639665	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45281_PI429285431	3.0332475	A	2.9082868	A	1.0904780268931	0	lncRNA	49729-1_{1..1294}	"gi|410170566|ref|XR_171050.1| PREDICTED: Homo sapiens uncharacterized LOC100507316 (LOC100507316), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410170566|ref|XR_171050.1| PREDICTED: Homo sapiens uncharacterized LOC100507316 (LOC100507316), misc_RNA"	NA	NA	NA	NA	NA	XR_171050.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008317	0.8738289	A	0.8759725	A	0.99851527300308	0	lncRNA	TCONS_00022468	NA	NA	NA	NA	XLOC_010797	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010797), lincRNA [TCONS_00022468]"	chr14:36685508-36685567	hs|14q13.3	Agilent_HUMAN_G3V2	TCONS_00022468	TCONS_00022468	chr14	 36685508	 36685567	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45787_PI429285431	4.7617445	P	4.106817	P	1.57453682568252	0	lncRNA	50128-1_{1..3000}	"gi|219277647|ref|NR_024625.1| Homo sapiens apoptosis inhibitor 5 (API5), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219277647|ref|NR_024625.1| Homo sapiens apoptosis inhibitor 5 (API5), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_024625.1	NA	NA	NA	NA	NA	Unknown
CUST_28477_PI429285431	0.8959802	A	1.0129744	A	0.922106825008506	0	lncRNA	30144-1_{1..569}	n325819|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316004|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316004|-1.1329600|-0.3379360	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325819|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316004|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316004|-1.1329600|-0.3379360	chr11	130609642	130610210	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004157	1.767816	A	0.8738336	A	1.85829867825253	0	lncRNA	ENST00000515153	XR_110563	XR_110563	NA	Hs.615617	XLOC_004929	NA	ENST00000515153	THC2635482	NA	"PREDICTED: Homo sapiens hypothetical LOC100505822 (LOC100505822), miscRNA [XR_110563]"	chr5:92387455-92387396	hs|5q15	Agilent_HUMAN_G3V2	ENST00000515153	ENST00000515153	chr5	 92387396	 92387455	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35914_PI429285431	0.9088709	A	0.9081531	A	1.00049766484028	0	lncRNA	37285-1_{1..1440}	n344560|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_108|NULL|-1.2877900|-0.4332090	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344560|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_108|NULL|-1.2877900|-0.4332090	chr2	152643812	152645251	+	NA	NA	NA	NA	ARL5A	NA	chr2:152657480-152663023	inter
CUST_1041_PI429285431	2.4423914	A	1.989605	A	1.3686811563072	0	lncRNA	1031-1_{1..968}	"transcript_id ""ENST00000439955.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439955.1"" | genecode_v17"	chr2	118593926	118594893	+	ENSG00000236255.1	ENST00000439955.1	AC009404.2	AC009404.2-002	DDX18	NA	chr2:118583926-118589953	inter
CUST_50634_PI429285431	1.727438	A	1.433752	A	1.2257680447917	0	lncRNA	54316-3_{6001..7484}	hg19_lincRNAsTranscripts_TCONS_l2_00003437 range=chr10:27220142-27232562 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003437 range=chr10:27220142-27232562 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 27226142	 27227625	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_14189_PI429285431	0.9079669	A	0.9161633	A	0.994334796580186	0	lncRNA	15841-1_{1..920}	lnc-LRP5L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRP5L-2:1	chr22	 25960703	 25961622	-	lnc-LRP5L-2	lnc-LRP5L-2:1	XLOC_014323	linc-LRP5L-1	ADRBK2	NA	chr22:25960861-25970789	inter
CUST_46815_PI429285431	6.5561366	P	6.307637	P	1.18797098484408	0	lncRNA	50957-3_{6001..9000}	"gi|383872679|ref|NR_047559.1| Homo sapiens IKAROS family zinc finger 3 (Aiolos) (IKZF3), transcript variant 14, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|383872679|ref|NR_047559.1| Homo sapiens IKAROS family zinc finger 3 (Aiolos) (IKZF3), transcript variant 14, non-coding RNA"	Chr17	 37919968	 37922967	-	22806	NR_047559.1	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.81;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.81;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.21;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20"	NA	inter
LNCA_21_P0007562	0.9091412	A	0.9363066	A	0.981346549413879	0	lncRNA	TCONS_00020435	NA	NA	NA	NA	XLOC_009765	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009765), lincRNA [TCONS_00020435]"	chr12:54536484-54536543	hs|12q13.13	Agilent_HUMAN_G3V2	TCONS_00020435	TCONS_00020435	chr12	 54536484	 54536543	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22811_PI429285431	4.1039076	P	3.2860143	P	1.76282993419908	0	lncRNA	24391-1_{1..441}	lnc-WDR45L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR45L-1:1	chr17	 80562189	 80562629	-	lnc-WDR45L-1	lnc-WDR45L-1:1	ENSG00000261845.1	RP13-638C3.4	FOXK2	NA	chr17:80552189-80562483	inner
LNCA_21_P0004390	1.3293328	A	0.9292956	A	1.31954193482215	0	lncRNA	TCONS_00010338	NA	NA	NA	NA	XLOC_004827	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004827), lincRNA [TCONS_00010338]"	chr5:54915263-54913951	hs|5q11.2	Agilent_HUMAN_G3V2	TCONS_00010338	TCONS_00010338	chr5	 54913951	 54915263	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45157_PI429285431	11.25907	P	10.807397	P	1.36762528401503	0	lncRNA	49633-2_{3001..3961}	"gi|224494036|ref|NR_027140.1| Homo sapiens tumor necrosis factor receptor superfamily, member 10b (TNFRSF10B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224494036|ref|NR_027140.1| Homo sapiens tumor necrosis factor receptor superfamily, member 10b (TNFRSF10B), transcript variant 3, non-coding RNA"	Chr8	 22880646	 22881606	-	8795	NR_027140.1	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10"	NA	inter
CUST_40513_PI429285431	7.19688	P	6.472068	P	1.6526852580997	0	lncRNA	41278-1_{1..1071}	n409522|NR_033907|lncRNA|Homosapiens||RefGeneNoncode|NR_033907||2.9933300|-0.3236168	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409522|NR_033907|lncRNA|Homosapiens||RefGeneNoncode|NR_033907||2.9933300|-0.3236168	chr9	 68427782	 68428852	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002483	2.0531218	A	0.92480373	A	2.18603737926039	0	lncRNA	XR_109933	XR_109933	XR_109933	NA	Hs.594921	LOC100506473	uncharacterized LOC100506473	NA	THC2607659	NA	"PREDICTED: Homo sapiens hypothetical LOC100506473 (LOC100506473), miscRNA [XR_109933]"	chr2:105950710-105950651	hs|2q12.1	Agilent_HUMAN_G3V2	XR_109933	XR_109933	chr2	105950651	105950710	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39079_PI429285431	1.8567097	A	0.9268703	A	1.90506391364095	0	lncRNA	40054-1_{1..2545}	n385569|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004afc.2||-1.1271100|-0.2545736	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385569|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004afc.2||-1.1271100|-0.2545736	chr9	 68795666	 68798210	+	NA	NA	NA	NA	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50"	NA	inter
CUST_38176_PI429285431	0.88919556	A	0.8981129	A	0.99383803418406	0	lncRNA	39244-4_{9001..10237}	n381431|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jab.3||3.7206200|-0.2943468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381431|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jab.3||3.7206200|-0.2943468	chr10	 43017962	 43019198	-	NA	NA	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40"	NA	inter
CUST_7189_PI429285431	0.8960668	A	0.9061415	A	0.993041076331274	0	lncRNA	7505-1_{1..341}	"transcript_id ""ENST00000364730.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000364730.1"" | genecode_v17"	chr3	139302947	139303287	-	ENSG00000201600.1	ENST00000364730.1	RN7SKP124	RN7SKP124-201	NMNAT3	NA	chr3:139292947-139313287	inner
LNCA_21_P0005380	3.8173258	P	3.307843	P	1.42353977119229	0	lncRNA	TCONS_00013445	NA	NA	NA	NA	XLOC_006098	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006098), lincRNA [TCONS_00013445]"	chr7:51969264-52019930	hs|7p12.1	Agilent_HUMAN_G3V2	TCONS_00013445	TCONS_00013445	chr7	 51969264	 52019930	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_329_PI429201921	4.667072	P	4.3476768	P	1.2478073391692	0	lncRNA	219-1_{1..3000}	TC19002329.hg.1	 TCONS_l2_00012845-XLOC_l2_006905 // Broad TUCP // linc-ZNF846-2 chr19:-:9898127-9903629 // chr19 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00012844-XLOC_l2_006905 // Broad TUCP // linc-ZNF846-2 chr19:-:9898019-9903301 // chr19 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00012846-XLOC_l2_006905 // Broad TUCP // linc-ZNF846-2 chr19:-:9898164-9903868 // chr19 // 100 // 100 // 0 // --- // 0///TCONS_l2_00012843-XLOC_l2_006905 // Broad TUCP // linc-ZNF846-2 chr19:-:9897280-9905142 // chr19 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr19:-:9897280-9905142	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00012843-XLOC_l2_006905	linc-ZNF846-2	chr19	  9897280	  9905142	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39536_PI429285431	4.031854	P	3.9073265	P	1.09015063672983	0	lncRNA	40482-1_{1..1558}	n387437|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011dzh.1||1.0582600|-0.4302497	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387437|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011dzh.1||1.0582600|-0.4302497	chr6	 88106841	 88108398	+	NA	NA	NA	NA	C6orf165	NA	chr6:88117690-88119459	inter
CUST_233_PI429285431	0.9004819	A	1.5784461	A	0.625046661426217	0	lncRNA	224-1_{1..850}	"transcript_id ""ENST00000449958.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000449958.1"" | genecode_v17"	chr1	 53832340	 53833189	-	ENSG00000230138.1	ENST00000449958.1	RP11-117D22.2	RP11-117D22.2-001	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50"	NA	inter
LNCA_21_P0003798	0.8928377	A	0.9100472	A	0.98814214867731	0	lncRNA	TCONS_00008650	NA	NA	NA	NA	XLOC_004166	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004166), lincRNA [TCONS_00008650]"	chr4:174374930-174374871	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_00008650	TCONS_00008650	chr4	174374871	174374930	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27289_PI429285431	4.1822324	P	4.516549	P	0.793159764865489	0	lncRNA	28846-1_{1..1387}	n324439|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041679|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041679|-0.0670997|-0.2896419	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324439|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041679|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041679|-0.0670997|-0.2896419	chr6	107272019	107273405	-	NA	NA	NA	NA	C6orf203	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.76;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-14.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-27.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50chr6:107349407-107351993"	NA	inter
LNCA_21_P0014129	0.89252317	A	2.344546	A	0.365508578045426	0	lncRNA	XR_108515	XR_108515	XR_108515	NA	NA	LOC100505566	uncharacterized LOC100505566	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505566, transcript variant 1 (LOC100505566), miscRNA [XR_108515]"	chr3:177470082-177470141	hs|3q26.32	Agilent_HUMAN_G3V2	XR_108515	XR_108515	chr3	177470082	177470141	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8653_PI429285431	14.341043	P	13.297308	P	2.06155792759692	0	lncRNA	10205-1_{1..822}	lnc-SERPINC1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:3	chr1	173837098	173837919	-	lnc-SERPINC1-1	lnc-SERPINC1-1:3	ENSG00000234741	GAS5	DARS2	NA	chr1:173827098-173827682	inter
CUST_23154_PI429285431	3.999116	P	4.4960146	P	0.708628502546086	0	lncRNA	24725-1_{1..455}	lnc-SAP30-5:33	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:33	chr4	174503856	174504310	+	lnc-SAP30-5	lnc-SAP30-5:33	ENSG00000237125.3	RP11-471J12.1	NA	NA	NA	inter
CUST_3617_PI429285431	2.7886322	A	2.4508939	A	1.26377383336126	0	lncRNA	3587-1_{1..366}	"transcript_id ""ENST00000447297.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447297.1"" | genecode_v17"	chr10	  8939952	  8940317	+	ENSG00000234752.1	ENST00000447297.1	RP11-428L9.1	RP11-428L9.1-001	NA	NA	NA	inter
LNCA_21_P0002418	0.8833572	A	0.89591813	A	0.991331219233423	0	lncRNA	TCONS_00005128	NA	NA	NA	NA	XLOC_002041	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002041), lincRNA [TCONS_00005128]"	chr2:30566646-30566587	hs|2p23.1	Agilent_HUMAN_G3V2	TCONS_00005128	TCONS_00005128	chr2	 30566587	 30566646	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26728_PI429285431	0.8877214	A	0.8887645	A	0.999277239493254	0	lncRNA	28225-1_{1..1827}	n4886|U19107|ZNF127ASRNA|Homosapiens|ZNF127AS|NONCODEv2.0|n4886|NULL|0.1912460|-0.3205919	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n4886|U19107|ZNF127ASRNA|Homosapiens|ZNF127AS|NONCODEv2.0|n4886|NULL|0.1912460|-0.3205919	chr15	 23812615	 23814441	-	NA	NA	NA	NA	MKRN3	NA	chr15:23810454-23813167	inner
CUST_15968_PI429285431	0.88658345	A	0.8990553	A	0.991392431415394	0	lncRNA	17666-1_{1..233}	lnc-RBMS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RBMS1-1:1	chr2	161850955	161851187	-	lnc-RBMS1-1	lnc-RBMS1-1:1	XLOC_002369	linc-RBMS1-4	NA	NA	NA	inter
CUST_27339_PI429285431	2.0860074	A	1.436718	A	1.56839549170564	0	lncRNA	28899-1_{1..850}	n324495|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040966|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040966|-0.4163750|-0.3997155	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324495|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040966|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040966|-0.4163750|-0.3997155	chr6	 53713505	 53714354	-	NA	NA	NA	NA	LRRC1	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-12.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70chr6:53703505-53729779"	NA	inner
CUST_45247_PI429285431	0.8784051	A	0.8799872	A	0.998903972922551	0	lncRNA	49700-1_{1..1749}	"gi|384551661|ref|NR_047582.1| Homo sapiens vacuolar protein sorting 13 homolog B (yeast) (VPS13B), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384551661|ref|NR_047582.1| Homo sapiens vacuolar protein sorting 13 homolog B (yeast) (VPS13B), transcript variant 5, non-coding RNA"	Chr8	100025494	100027242	+	157680	NR_047582.1	NA	NA	NA	NA	NA	inter
CUST_49456_PI429285431	0.90031177	A	0.8899398	A	1.00721520683485	0	lncRNA	53256-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00024300 range=chr6:78470911-78636743 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024300 range=chr6:78470911-78636743 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 78470911	 78473910	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8595_PI429285431	3.0389798	A	3.214262	P	0.88559427448642	0	lncRNA	10151-1_{1..1612}	lnc-HRCT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-HRCT1-1:1	chr9	 35910154	 35911765	+	lnc-HRCT1-1	lnc-HRCT1-1:1	ENSG00000235387	RP11-327L3.1	HRCT1	NA	chr9:35906189-35907138	inter
LNCA_21_P0009669	0.87317157	A	2.578586	A	0.306633147920304	0	lncRNA	TCONS_00026840	NA	NA	NA	NA	XLOC_013256	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013256), lincRNA [TCONS_00026840]"	chr19:20327937-20327878	hs|19p12	Agilent_HUMAN_G3V2	TCONS_00026840	TCONS_00026840	chr19	 20327878	 20327937	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7880_PI429285431	6.2165947	P	6.4033356	P	0.878588243628905	0	lncRNA	9500-1_{1..3000}	lnc-C10orf10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C10orf10-2:1	chr10	 45455040	 45458039	-	lnc-C10orf10-2	lnc-C10orf10-2:1	ENSG00000224812	RP11-18M11.2	RASSF4	NA	chr10:45455219-45465137	inter
CUST_5644_PI429285431	3.4144268	P	3.0598934	P	1.27857199548102	0	lncRNA	5572-1_{1..295}	"transcript_id ""ENST00000565215.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565215.1"" | genecode_v17"	chr16	 80601574	 80601868	-	ENSG00000260737.1	ENST00000565215.1	RP11-18F14.1	RP11-18F14.1-004	NA	NA	NA	inter
CUST_17950_PI429285431	0.909961	A	0.91046554	A	0.999650340666599	0	lncRNA	19681-1_{1..645}	lnc-C9orf102-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf102-4:1	chr9	 98893927	 98894571	+	lnc-C9orf102-4	lnc-C9orf102-4:1	XLOC_007478	linc-HABP4-2	NA	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00"	NA	inter
CUST_7596_PI429285431	5.4101	P	4.050589	P	2.56598191078192	0	lncRNA	9231-2_{3001..4440}	lnc-C16orf52-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C16orf52-1:1	chr16	 22095017	 22096456	+	lnc-C16orf52-1	lnc-C16orf52-1:1	ENSG00000185716	C16orf52	C16orf52	NA	chr16:22082017-22095975	inner
CUST_4266_PI429285431	3.9447038	P	4.257187	P	0.805254543006621	0	lncRNA	4223-1_{1..2428}	"transcript_id ""ENST00000603432.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603432.1"" | genecode_v17"	chr12	 54350318	 54352745	+	ENSG00000271090.1	ENST00000603432.1	AC012531.23	AC012531.23-001	HOXC12	NA	chr12:54348714-54350350	inner
CUST_7325_PI429285431	3.9335327	P	4.252639	P	0.801566266582324	0	lncRNA	8624-1_{1..98}	"transcript_id ""ENST00000516519.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516519.1"" | genecode_v17"	chr17	 33424579	 33424676	-	ENSG00000252328.1	ENST00000516519.1	Vault	Vault.3-201	RAD51D	NA	chr17:33426811-33434676	inter
CUST_33816_PI429285431	4.368429	P	4.7127905	P	0.787656496100665	0	lncRNA	35364-1_{1..2313}	n340601|CR617935|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3063|NULL|-1.1280500|-0.4300485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340601|CR617935|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3063|NULL|-1.1280500|-0.4300485	chr5	120698696	120701008	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26564_PI429285431	3.6773436	P	3.5389128	P	1.10070724007118	0	lncRNA	28068-2_{3001..4531}	lnc-CALML5-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,UCSC,"	>lnc-CALML5-2:4	chr10	  5566879	  5568409	-	lnc-CALML5-2	lnc-CALML5-2:4	ENSG00000205488.3	RP11-116G8.4	CALML3	NA	chr10:5566924-5568225	inter
CUST_39261_PI429285431	1.2970976	A	0.87477833	A	1.34008013082309	0	lncRNA	40233-1_{1..2304}	n386155|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bwr.1||1.2285900|-0.2614352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n386155|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bwr.1||1.2285900|-0.2614352	chr16	 21312169	 21314472	+	NA	NA	NA	NA	CRYM	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-62.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70chr16:21302169-21314404"	NA	inter
CUST_12963_PI429285431	4.524411	P	4.853863	P	0.795838721434138	0	lncRNA	14590-1_{1..3000}	lnc-KIAA0947-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA0947-1:2	chr5	  5699273	  5702272	+	lnc-KIAA0947-1	lnc-KIAA0947-1:2	XLOC_004270	linc-UBE2QL1	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10"	NA	inter
LNCA_21_P0009129	0.8781487	A	0.8753721	A	1.00192644567832	0	lncRNA	TCONS_00025035	NA	NA	NA	NA	XLOC_011980	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011980), lincRNA [TCONS_00025035]"	chr16:66167734-66167675	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00025035	TCONS_00025035	chr16	 66167675	 66167734	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36287_PI429285431	2.5157366	A	3.0319533	P	0.699203009697392	0	lncRNA	37519-3_{6001..6594}	n344813|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_362|NULL|-1.3714300|-0.2082293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344813|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_362|NULL|-1.3714300|-0.2082293	chr1	 94164693	 94165286	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90"	NA	inner
CUST_25456_PI429285431	1.627623	A	1.8428197	A	0.861428702749417	0	lncRNA	26986-1_{1..2107}	lnc-R3HDM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-R3HDM2-1:1	chr12	 57690194	 57692300	-	lnc-R3HDM2-1	lnc-R3HDM2-1:1	ENSG00000258830.1	RP11-123K3.4	R3HDM2	NA	chr12:57680194-57700267	inner
CUST_26895_PI429285431	0.8701931	A	0.87197685	A	0.998764362745828	0	lncRNA	28413-1_{1..719}	n323971|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054116|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054116|-1.3143400|-0.2992061	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323971|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054116|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054116|-1.3143400|-0.2992061	chr9	128318516	128319234	+	NA	NA	NA	NA	MAPKAP1	NA	chr9:128308516-128330908	inner
CUST_1319_PI429285431	1.7868941	A	1.6172131	A	1.12480974606341	0	lncRNA	1308-1_{1..702}	"transcript_id ""ENST00000438096.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438096.1"" | genecode_v17"	chr3	 24535799	 24536500	+	ENSG00000228791.2	ENST00000438096.1	THRB-AS1	THRB-AS1-002	THRB	NA	chr3:24525799-24536313	inner
CUST_42395_PI429285431	3.8514228	P	3.8861237	P	0.976234132972073	0	lncRNA	45090-1_{1..122}	ENST00000390885 ncrna:snoRNA chromosome:GRCh37:1:212198903:212199024:1 gene:ENSG00000212187 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390885 ncrna:snoRNA chromosome:GRCh37:1:212198903:212199024:1 gene:ENSG00000212187 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	212198903	212199024	+	ENSG00000212187	ENST00000390885	NA	NA	INTS7	NA	chr1:212188903-212209002	inter
CUST_9372_PI429285431	0.89834243	A	0.91802615	A	0.986448938600324	0	lncRNA	10873-1_{1..643}	lnc-LRRC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-LRRC1-2:1	chr6	 53871769	 53872411	+	lnc-LRRC1-2	lnc-LRRC1-2:1	XLOC_005329	linc-C6orf142-1	NA	NA	NA	inter
CUST_47846_PI429285431	0.8933373	A	0.90257305	A	0.993618713370415	0	lncRNA	51752-1_{1..3000}	"gi|197100147|ref|NR_024086.1| Homo sapiens COPG2 imprinted transcript 1 (non-protein coding) (COPG2IT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|197100147|ref|NR_024086.1| Homo sapiens COPG2 imprinted transcript 1 (non-protein coding) (COPG2IT1), non-coding RNA"	NA	NA	NA	NA	NA	NR_024086.1	NA	NA	NA	NA	NA	Unknown
CUST_48139_PI429285431	9.426579	P	9.684231	P	0.836448139602781	0	lncRNA	52007-1_{1..1159}	"gi|310110377|ref|XR_111293.1| PREDICTED: Homo sapiens uncharacterized LOC100509764 (LOC100509764), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310110377|ref|XR_111293.1| PREDICTED: Homo sapiens uncharacterized LOC100509764 (LOC100509764), misc_RNA"	NA	NA	NA	NA	NA	XR_111293.1	NA	NA	NA	NA	NA	Unknown
CUST_17926_PI429285431	2.1512856	A	1.3310403	A	1.76570618832308	0	lncRNA	19658-1_{1..873}	lnc-ADARB1-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADARB1-3:6	chr21	 46709266	 46710138	+	lnc-ADARB1-3	lnc-ADARB1-3:6	XLOC_013981	linc-COL18A1-4	POFUT2	NA	chr21:46699266-46707811	inter
LNCA_33_P3422265	9.380863	P	8.81596	P	1.47928804556435	0	lncRNA	XR_132809	XR_132809	XR_132809	   729305	Hs.148365	LOC729305	uncharacterized LOC729305	ENST00000513405	THC2678881	NA	"PREDICTED: Homo sapiens hypothetical LOC729305 (LOC729305), miscRNA [XR_132809]"	chr11:134606350-134606409	hs|11q25	Agilent_HUMAN_G3V2	XR_132809	XR_132809	chr11	134606350	134606409	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29920_PI429285431	6.0736303	P	5.848151	P	1.16916561060947	0	lncRNA	31684-1_{1..399}	n334063|M30493|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195365|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195365|-0.6631040|-0.0766182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334063|M30493|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195365|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195365|-0.6631040|-0.0766182	chr5	149516570	149516968	-	NA	NA	NA	NA	PDGFRB	NA	chr5:149506570-149535422	inner
CUST_45586_PI429285431	7.1781745	P	5.9310026	P	2.3737564162887	0	lncRNA	49977-2_{3001..3294}	"gi|229577365|ref|NR_027634.1| Homo sapiens family with sequence similarity 35, member B2 (pseudogene) (FAM35B2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|229577365|ref|NR_027634.1| Homo sapiens family with sequence similarity 35, member B2 (pseudogene) (FAM35B2), non-coding RNA"	NW_003871068.1	  1963815	  1964108	+	439965	NR_027634.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009530	1.4818552	A	2.040312	A	0.679028107813179	0	lncRNA	TCONS_00026423	NA	NA	NA	NA	XLOC_012769	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012769), lincRNA [TCONS_00026423]"	chr18:11489388-11489329	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_00026423	TCONS_00026423	chr18	 11489329	 11489388	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32500_PI429285431	0.90077335	A	0.90848994	A	0.994665546398658	0	lncRNA	34167-1_{1..531}	n339104|AF085958|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1534|NULL|-0.9704620|-0.2130367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339104|AF085958|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1534|NULL|-0.9704620|-0.2130367	chr2	205582053	205582583	-	NA	NA	NA	NA	PARD3B	NA	chr2:205572053-205592579	inner
CUST_22536_PI429285431	3.2361608	A	3.5156894	P	0.823860169257567	0	lncRNA	24124-1_{1..2480}	lnc-CDK5R1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDK5R1-1:1	chr17	 30824628	 30827107	+	lnc-CDK5R1-1	lnc-CDK5R1-1:1	ENSG00000266718.1	RP11-466A19.1	MYO1D	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90chr17:30819628-30836351"	NA	inner
CUST_41890_PI429285431	1.6577482	A	0.92599946	A	1.66065080378443	0	lncRNA	43584-1_{1..78}	ENST00000385224 ncrna:miRNA chromosome:GRCh37:14:101533061:101533138:1 gene:ENSG00000207959 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385224 ncrna:miRNA chromosome:GRCh37:14:101533061:101533138:1 gene:ENSG00000207959 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101533061	101533138	+	ENSG00000207959	ENST00000385224	NA	NA	NA	NA	NA	inter
CUST_213_PI429285431	4.01994	P	4.385872	P	0.775967427868088	0	lncRNA	203-1_{1..471}	"transcript_id ""ENST00000440100.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440100.1"" | genecode_v17"	chr1	 41134761	 41135231	-	ENSG00000237899.1	ENST00000440100.1	RP4-739H11.3	RP4-739H11.3-001	NFYC	NA	chr1:41157242-41163260	inter
CUST_40251_PI429285431	10.702618	P	10.523887	P	1.13188783448615	0	lncRNA	41066-1_{1..3000}	n408177|NR_028319|lncRNA|Homosapiens||RefGeneNoncode|NR_028319||9.0967800|-0.1742680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408177|NR_028319|lncRNA|Homosapiens||RefGeneNoncode|NR_028319||9.0967800|-0.1742680	chrY	 16636453	 16639452	+	NA	NA	NA	NA	NLGN4Y	NA	chrY:16634488-16955848	inner
CUST_21126_PI429285431	0.89269066	A	1.0445597	A	0.900083630776107	0	lncRNA	22752-1_{1..811}	lnc-KCNG3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KCNG3-1:1	chr2	 42651961	 42652771	-	lnc-KCNG3-1	lnc-KCNG3-1:1	ENSG00000225810.2	AC006038.4	NA	NA	NA	inter
CUST_20553_PI429285431	3.8910363	P	3.5578456	A	1.25979649283267	0	lncRNA	22194-1_{1..2288}	lnc-PMM2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PMM2-2:1	chr16	  8953985	  8956272	+	lnc-PMM2-2	lnc-PMM2-2:1	ENSG00000260276.1	RP11-77H9.2	CARHSP1	"hg19_refFlat_CARHSP1:range=chr16:8949021-89531855'pad=0,hg19_refFlat_CARHSP1:range=chr16:8949021-89531855'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10chr16:8946802-8962863"	NA	inner
CUST_31858_PI429285431	0.9022659	A	0.9194406	A	0.98816598445725	0	lncRNA	33591-1_{1..289}	n338408|AF508910|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|805|NULL|-1.1767300|-0.2855920	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338408|AF508910|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|805|NULL|-1.1767300|-0.2855920	chr1	182683445	182683733	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37143_PI429285431	0.8959978	A	2.183886	A	0.40955008531505	0	lncRNA	38262-3_{6001..6299}	n345580|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1129|NULL|-1.6015200|-0.2891391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345580|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1129|NULL|-1.6015200|-0.2891391	chr3	 42062195	 42062493	+	NA	NA	NA	NA	LOC100287063	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-8.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chr3:42046195-42125985"	NA	inter
CUST_20414_PI429285431	0.90485847	A	0.9164703	A	0.991983596891467	0	lncRNA	22056-1_{1..457}	lnc-HMBOX1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMBOX1-4:1	chr8	 28997958	 28998414	+	lnc-HMBOX1-4	lnc-HMBOX1-4:1	ENSG00000254129.1	CTD-2647L4.1	KIF13B	"hg19_refFlat_KIF13B:range=chr8:28928021-291205515'pad=0,hg19_refFlat_KIF13B:range=chr8:28928021-291205515'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90chr8:28987958-29008198"	NA	inner
CUST_23940_PI429285431	5.4803004	P	5.2949405	P	1.13710060314681	0	lncRNA	25497-1_{1..465}	lnc-MICB-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MICB-3:4	chr6	 31431367	 31431831	+	lnc-MICB-3	lnc-MICB-3:4	ENSG00000206337.6	HCP5	HCP5	NA	chr6:31429623-31433586	inter
LNCA_21_P0005635	0.88265955	A	0.89468944	A	0.991696184396083	0	lncRNA	ENST00000505083	NA	AK057402	NA	Hs.559609	XLOC_006936	NA	ENST00000505083	THC2628747	NA	"BROAD Institute lincRNA (XLOC_006936), lincRNA [TCONS_00014548]"	chr8:135894058-135894117	hs|8q24.22	Agilent_HUMAN_G3V2	ENST00000505083	ENST00000505083	chr8	135894058	135894117	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37391_PI429285431	7.880341	P	7.8101068	P	1.04988710328622	0	lncRNA	38495-1_{1..327}	n345843|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1392|NULL|-1.3331700|-0.1823221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345843|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1392|NULL|-1.3331700|-0.1823221	chr9	 68452953	 68453279	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5474_PI429285431	6.0996966	P	6.395129	P	0.814828078103466	0	lncRNA	5407-1_{1..394}	"transcript_id ""ENST00000432973.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432973.1"" | genecode_v17"	chr16	 26333549	 26333942	+	ENSG00000231876.2	ENST00000432973.1	AC009158.1	AC009158.1-003	NA	NA	NA	inter
CUST_26816_PI429285431	0.8845905	A	1.7457592	A	0.550506422406038	0	lncRNA	28329-1_{1..895}	n323885|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056295|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056295|-0.7404440|-0.2317555	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323885|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056295|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056295|-0.7404440|-0.2317555	chrX	 41996655	 41997549	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49024_PI429285431	0.8835803	A	0.89274466	A	0.993667882593998	0	lncRNA	52853-1_{1..1276}	hg19_lincRNAsTranscripts_TCONS_l2_00020481 range=chr4:37075835-37135530 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020481 range=chr4:37075835-37135530 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 37075835	 37077110	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013682	0.87869006	A	0.88773745	A	0.99374844989398	0	lncRNA	ENST00000415302	NA	NA	NA	NA	XLOC_l2_015336	NA	ENST00000415302	THC2779909	NA	"BROAD Institute lincRNA (XLOC_l2_015336), lincRNA [TCONS_l2_00029552]"	chr9:110190592-110189577	hs|9q31.2	Agilent_HUMAN_G3V2	ENST00000415302	ENST00000415302	chr9	110189577	110190592	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44519_PI429285431	4.9544287	P	3.3870366	P	2.96368496581198	0	lncRNA	49115-2_{3001..5346}	"gi|374532768|ref|NR_046262.1| Homo sapiens uncharacterized LOC646719 (LOC646719), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374532768|ref|NR_046262.1| Homo sapiens uncharacterized LOC646719 (LOC646719), non-coding RNA"	Chr5	 36874463	 36876808	-	646719	NR_046262.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90"	NA	inter
LNCA_21_P0006035	4.0348573	P	4.2184787	P	0.880490046307892	0	lncRNA	ENST00000450399	NA	NA	NA	NA	XLOC_007487	NA	ENST00000450399	NA	NA	"BROAD Institute lincRNA (XLOC_007487), lincRNA [TCONS_00015723]"	chr9:101947114-101947173	hs|9q22.33	Agilent_HUMAN_G3V2	ENST00000450399	ENST00000450399	chr9	101947114	101947173	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30651_PI429285431	11.189047	P	10.723035	P	1.38128593730951	0	lncRNA	32433-1_{1..241}	n336033|X83219|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323943|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323943|1.4245800|-0.3135749	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336033|X83219|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323943|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323943|1.4245800|-0.3135749	chr21	 35279645	 35279885	-	NA	NA	NA	NA	ATP5O	NA	chr21:35275757-35288158	inner
CUST_6687_PI429285431	2.581348	A	2.3719852	A	1.15617741832559	0	lncRNA	6636-1_{1..616}	"transcript_id ""ENST00000433587.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433587.1"" | genecode_v17"	chr20	 34674174	 34674789	-	ENSG00000237063.1	ENST00000433587.1	RP4-550H1.5	RP4-550H1.5-001	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
CUST_16498_PI429285431	0.9021859	A	0.8937356	A	1.00587448915215	0	lncRNA	18195-1_{1..520}	lnc-AP3S1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP3S1-3:1	chr5	115044263	115044782	+	lnc-AP3S1-3	lnc-AP3S1-3:1	XLOC_004514	linc-AP3S1-3	NA	NA	NA	inter
LNCA_21_P0005473	0.8736954	A	0.8764177	A	0.998114824609883	0	lncRNA	TCONS_00013713	NA	NA	NA	NA	XLOC_006364	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006364), lincRNA [TCONS_00013713]"	chr7:19039502-19039443	hs|7p21.1	Agilent_HUMAN_G3V2	TCONS_00013713	TCONS_00013713	chr7	 19039443	 19039502	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39035_PI429285431	2.1815977	A	0.9206421	A	2.39654428613246	0	lncRNA	40015-1_{1..2125}	n385415|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003yaj.1||2.6703500|-0.3772054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385415|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003yaj.1||2.6703500|-0.3772054	chr8	 75512100	 75514224	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29394_PI429285431	4.7254705	P	4.0423975	P	1.60555601610024	0	lncRNA	31148-1_{1..208}	n332710|AF009315|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062015|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062015|-1.1144900|-0.1889120	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332710|AF009315|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062015|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062015|-1.1144900|-0.1889120	chr5	  9199553	  9199760	+	NA	NA	NA	NA	SEMA5A	NA	chr5:9189553-9209761	inner
CUST_14047_PI429285431	0.8931299	A	1.076023	A	0.880934646705176	0	lncRNA	15694-1_{1..3000}	lnc-ICOSLG-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ICOSLG-6:1	chr21	 45578913	 45581912	-	lnc-ICOSLG-6	lnc-ICOSLG-6:1	XLOC_014110	linc-CSTB-1	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80"	NA	inter
CUST_46397_PI429285431	9.780645	P	9.67905	P	1.07295903810602	0	lncRNA	50614-1_{1..1506}	"gi|381140026|ref|NR_046466.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|381140026|ref|NR_046466.1| Homo sapiens maternally expressed 3 (non-protein coding) (MEG3), transcript variant 9, non-coding RNA"	Chr14	101292445	101293950	+	55384	NR_046466.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001331	5.0187006	P	4.9905868	P	1.01967811218759	0	lncRNA	TCONS_00001014	NA	NA	NA	NA	XLOC_000280	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000280), lincRNA [TCONS_00001014]"	chr1:88425494-88425553	hs|1p22.2	Agilent_HUMAN_G3V2	TCONS_00001014	TCONS_00001014	chr1	 88425494	 88425553	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15061_PI429285431	5.8196826	P	6.017563	P	0.871830511641912	0	lncRNA	16724-1_{1..675}	lnc-DNAJB11-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAJB11-3:3	chr3	186162695	186163369	+	lnc-DNAJB11-3	lnc-DNAJB11-3:3	XLOC_002958	linc-DNAJB11-3	NA	NA	NA	inter
CUST_47351_PI429285431	0.89151007	A	0.9033747	A	0.991809789207754	0	lncRNA	51402-1_{1..2839}	"gi|108773779|ref|NR_003087.1| Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), member 13, pseudogene (ABCC13), transcript variant A, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|108773779|ref|NR_003087.1| Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), member 13, pseudogene (ABCC13), transcript variant A, non-coding RNA"	Chr21	 15646120	 15648958	+	150000	NR_003087.1	NA	NA	NA	"hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-57.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40"	NA	inter
CUST_51417_PI429285431	1.5981922	A	2.0288842	A	0.741905838996272	0	lncRNA	54996-1_{1..1719}	hg19_lincRNAsTranscripts_TCONS_l2_00009941 range=chr16:2721023-2723413 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009941 range=chr16:2721023-2723413 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	  2721023	  2722741	-	NA	NA	NA	NA	KCTD5	NA	chr16:2732495-2733413	inter
CUST_46778_PI429285431	5.633095	P	6.368362	P	0.600706841481692	0	lncRNA	50925-1_{1..1173}	"gi|310123596|ref|XR_109372.1| PREDICTED: Homo sapiens uncharacterized LOC79999 (LOC79999), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123596|ref|XR_109372.1| PREDICTED: Homo sapiens uncharacterized LOC79999 (LOC79999), misc_RNA"	NA	NA	NA	NA	NA	XR_109372.1	NA	NA	NA	"hg19_refFlat_GRAPL:range=chr17:19030933-190616895'pad=0,hg19_refFlat_GRAPL:range=chr17:19030933-190616895'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60"	NA	Unknown
CUST_126_PI429201921	2.6492717	A	3.1942594	A	0.685397245963316	0	lncRNA	118-2_{3001..3437}	TC07002208.hg.1	 TCONS_l2_00027081-XLOC_l2_013315 // Broad TUCP // linc-C7orf71-1 chr7:+:26591514-26594895 // chr7 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00027080-XLOC_l2_013315 // Broad TUCP // linc-C7orf71-1 chr7:+:26591457-26594733 // chr7 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00025736-XLOC_l2_013315 // Broad TUCP // linc-C7orf71-1 chr7:+:26591625-26594532 // chr7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr7:+:26591457-26594733	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00027080-XLOC_l2_013315	linc-C7orf71-1	chr7	 26591457	 26594733	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19780_PI429285431	0.8839593	A	0.890879	A	0.995215113671693	0	lncRNA	21438-1_{1..442}	lnc-BARD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BARD1-1:1	chr2	215548839	215549280	-	lnc-BARD1-1	lnc-BARD1-1:1	ENSG00000197585.5	AC107218.3	NA	NA	NA	inter
CUST_18803_PI429285431	0.87911016	A	0.92879635	A	0.966146458883038	0	lncRNA	20498-1_{1..869}	lnc-SEL1L-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SEL1L-8:1	chr14	 84521935	 84522803	-	lnc-SEL1L-8	lnc-SEL1L-8:1	ENSG00000258396	CTD-2335K5.1	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-61.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF268:range=chr12:133758584-1337787485'pad=0,hg19_refFlat_ZNF268:range=chr12:133758584-1337787485'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60"	NA	inter
CUST_11414_PI429285431	1.6310757	A	1.5396602	A	1.06541500155951	0	lncRNA	12980-1_{1..1447}	lnc-POU3F1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POU3F1-1:2	chr1	 38677770	 38679216	-	lnc-POU3F1-1	lnc-POU3F1-1:2	XLOC_000788	linc-POU3F1-2	NA	NA	NA	inter
CUST_13731_PI429285431	2.183437	A	3.7195399	P	0.34481563565794	0	lncRNA	15374-1_{1..327}	lnc-LRCH1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRCH1-5:1	chr13	 47844316	 47844642	+	lnc-LRCH1-5	lnc-LRCH1-5:1	XLOC_010385	linc-NUDT15-3	NA	NA	NA	inter
CUST_30620_PI429285431	2.3390112	A	2.6445794	A	0.809123483553655	0	lncRNA	32402-1_{1..372}	n335959|X72446|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323288|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323288|2.6466400|-0.0817309	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335959|X72446|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323288|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323288|2.6466400|-0.0817309	chr2	 89161396	 89161767	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8107_PI429285431	4.903867	P	4.970648	P	0.954765935876258	0	lncRNA	9711-1_{1..1282}	lnc-METTL15-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-METTL15-4:3	chr11	 27719025	 27720306	+	lnc-METTL15-4	lnc-METTL15-4:3	ENSG00000245573	AC104563.1	BDNF	"hg19_refFlat_BDNF:range=chr11:27679368-276801115'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-276801115'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BDNF:range=chr11:27679368-277225835'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277225835'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BDNF:range=chr11:27679368-276958315'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-276958315'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BDNF:range=chr11:27679368-277209525'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277209525'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_BDNF:range=chr11:27679368-277429615'pad=0,hg19_refFlat_BDNF:range=chr11:27679368-277429615'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00chr11:27709025-27729721"	NA	inter
CUST_50076_PI429285431	2.9190989	A	3.1179018	P	0.871273216756616	0	lncRNA	53809-1_{1..298}	hg19_lincRNAsTranscripts_TCONS_l2_00028267 range=chr8:82538937-82543901 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028267 range=chr8:82538937-82543901 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 82538937	 82539234	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8235_PI429285431	1.2276806	A	0.8894255	A	1.26422662157503	0	lncRNA	9825-1_{1..1784}	lnc-CLRN2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLRN2-1:2	chr4	 17541212	 17542995	+	lnc-CLRN2-1	lnc-CLRN2-1:2	ENSG00000251507	ENST00000511740	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_16488_PI429285431	0.8935209	A	0.9154935	A	0.984885147885883	0	lncRNA	18186-1_{1..612}	lnc-NOVA1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOVA1-1:2	chr14	 26866359	 26866970	-	lnc-NOVA1-1	lnc-NOVA1-1:2	XLOC_010979	linc-STXBP6-2	NA	NA	NA	inter
CUST_9847_PI429285431	1.4870195	A	0.9122445	A	1.48944515394838	0	lncRNA	11367-1_{1..2411}	lnc-USP14-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP14-4:1	chr18	   317866	   320276	+	lnc-USP14-4	lnc-USP14-4:1	XLOC_012601	linc-CETN1-2	COLEC12	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70chr18:319355-328033"	NA	inter
CUST_202_PI429285431	4.791334	P	4.1622477	P	1.54658518670689	0	lncRNA	192-1_{1..1108}	"transcript_id ""ENST00000430320.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000430320.3"" | genecode_v17"	chr1	 31297075	 31298182	+	ENSG00000223382.3	ENST00000430320.3	RP1-65J11.1	RP1-65J11.1-002	NA	NA	NA	inter
CUST_26724_PI429285431	0.91263384	A	0.9470276	A	0.976441988729789	0	lncRNA	28220-1_{1..3000}	n4308|D43770|CMPD-associatedncRNA|Homosapiens|CMPD-associatedncRNA|NONCODEv2.0|n4308|NULL|-1.5906100|-0.3255106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n4308|D43770|CMPD-associatedncRNA|Homosapiens|CMPD-associatedncRNA|NONCODEv2.0|n4308|NULL|-1.5906100|-0.3255106	chr17	 70026956	 70029955	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00"	NA	inter
LNCA_21_P0007675	8.526926	P	8.611525	P	0.943046621205741	0	lncRNA	TCONS_00020666	NA	NA	NA	NA	XLOC_009969	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009969), lincRNA [TCONS_00020666]"	chr12:133698592-133698651	hs|12q24.33	Agilent_HUMAN_G3V2	TCONS_00020666	TCONS_00020666	chr12	133698592	133698651	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009053	4.299679	P	4.1777616	P	1.08818013726832	0	lncRNA	TCONS_00024718	NA	NA	NA	NA	XLOC_011999	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011999), lincRNA [TCONS_00024718]"	chr16:71466953-71466773	hs|16q22.2	Agilent_HUMAN_G3V2	TCONS_00024718	TCONS_00024718	chr16	 71466773	 71466953	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12062_PI429285431	0.9255842	A	1.0003182	A	0.949517174082585	0	lncRNA	13649-1_{1..1749}	lnc-EIF2AK3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2AK3-1:1	chr2	 88990273	 88992021	-	lnc-EIF2AK3-1	lnc-EIF2AK3-1:1	XLOC_002198	linc-EIF2AK3-1	RPIA	NA	chr2:88991176-89001016	inter
CUST_41821_PI429285431	1.9325955	A	0.91642654	A	2.02254101599997	0	lncRNA	43419-1_{1..75}	ENST00000579874 ncrna:miRNA chromosome:GRCh37:11:71783274:71783348:-1 gene:ENSG00000263742 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579874 ncrna:miRNA chromosome:GRCh37:11:71783274:71783348:-1 gene:ENSG00000263742 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 71783274	 71783348	-	ENSG00000263742	ENST00000579874	NA	NA	NUMA1	NA	chr11:71773274-71791573	inner
CUST_38645_PI429285431	1.5822688	A	0.92813826	A	1.57366727508269	0	lncRNA	39649-1_{1..992}	n383881|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wvd.1||1.2765600|-0.1405964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383881|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wvd.1||1.2765600|-0.1405964	chr20	 25744101	 25745092	-	NA	NA	NA	NA	LOC100289375	NA	chr20:25825857-25848100	inter
CUST_24389_PI429285431	5.1084213	P	5.508809	P	0.757654648965334	0	lncRNA	25942-1_{1..486}	lnc-PCGF2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PCGF2-2:1	chr17	 36862307	 36862792	-	lnc-PCGF2-2	lnc-PCGF2-2:1	ENSG00000266040.1	CTB-58E17.3	MLLT6	NA	chr17:36861873-36872514	inner
CUST_16428_PI429285431	0.9201093	A	0.9759988	A	0.96200113416839	0	lncRNA	18128-1_{1..211}	lnc-ZNF366-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF366-3:4	chr5	 71985735	 71985945	-	lnc-ZNF366-3	lnc-ZNF366-3:4	XLOC_004875	linc-ZNF366-4	NA	NA	NA	inter
LNCA_21_P0008932	0.90243244	A	0.9232267	A	0.985689894280752	0	lncRNA	TCONS_00024390	NA	NA	NA	NA	XLOC_011715	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011715), lincRNA [TCONS_00024390]"	chr16:49494625-49494684	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00024390	TCONS_00024390	chr16	 49494625	 49494684	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3972_PI429285431	5.0220838	P	6.3509884	P	0.398070371416417	0	lncRNA	3942-1_{1..1745}	"transcript_id ""ENST00000499732.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000499732.1"" | genecode_v17"	chr11	 65190245	 65191989	+	ENSG00000245532.3	ENST00000499732.1	NEAT1	NEAT1-002	FRMD8	NA	chr11:65180245-65180996	inter
CUST_17261_PI429285431	1.8055936	A	1.3421745	A	1.37880563505964	0	lncRNA	18979-1_{1..925}	lnc-NDUFS6-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDUFS6-5:2	chr5	  1948808	  1949732	+	lnc-NDUFS6-5	lnc-NDUFS6-5:2	XLOC_004250	linc-C5orf38-5	NA	NA	NA	inter
LNCA_21_P0004748	0.89948976	A	1.2244321	A	0.798330292479219	0	lncRNA	ENST00000424283	NA	NA	NA	NA	XLOC_005729	NA	ENST00000424283	NA	NA	"BROAD Institute lincRNA (XLOC_005729), lincRNA [TCONS_00011493]"	chr6:43705491-43696989	hs|6p21.1	Agilent_HUMAN_G3V2	ENST00000424283	ENST00000424283	chr6	 43696989	 43705491	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37853_PI429285431	5.557187	P	5.351717	P	1.15306192918094	0	lncRNA	38944-1_{1..449}	n346383|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1933|NULL|-1.2969500|-0.0541073	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346383|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1933|NULL|-1.2969500|-0.0541073	chr4	  4051760	  4052208	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25726_PI429285431	5.593	P	6.2511005	P	0.633712114275158	0	lncRNA	27253-1_{1..531}	lnc-S100A1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-S100A1-2:1	chr1	153507380	153507910	+	lnc-S100A1-2	lnc-S100A1-2:1	ENSG00000238279.1	BX470102.3	S100A4	NA	chr1:153516095-153517591	inner
CUST_19815_PI429285431	6.139473	P	6.6048126	P	0.724300562084515	0	lncRNA	21472-1_{1..671}	lnc-SLC30A7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC30A7-1:1	chr1	101461193	101461863	+	lnc-SLC30A7-1	lnc-SLC30A7-1:1	ENSG00000235795.1	RP11-421L21.2	DPH5	NA	chr1:101455179-101471816	inner
CUST_4521_PI429285431	5.918881	P	6.3624406	P	0.735318098624627	0	lncRNA	4469-1_{1..201}	"transcript_id ""ENST00000544034.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544034.1"" | genecode_v17"	chr12	131112861	131113061	-	ENSG00000256725.1	ENST00000544034.1	RP11-662M24.2	RP11-662M24.2-001	NA	NA	NA	inter
CUST_21070_PI429285431	0.9148489	A	0.92512774	A	0.992900571887889	0	lncRNA	22697-1_{1..3000}	lnc-TDRD7-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TDRD7-1:6	chr9	100139045	100142044	+	lnc-TDRD7-1	lnc-TDRD7-1:6	ENSG00000255036.1	RP11-23J9.4	C9orf174	NA	chr9:100129045-100139577	inner
CUST_39268_PI429285431	1.4329197	A	1.0520709	A	1.30210771651108	0	lncRNA	40240-1_{1..1890}	n386192|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010dki.1||-0.3014890|-0.2979757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n386192|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010dki.1||-0.3014890|-0.2979757	chr18	  1268311	  1270200	-	NA	NA	NA	NA	NA	"hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-28.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50"	NA	inter
CUST_15536_PI429285431	1.3371214	A	1.0446416	A	1.22474364013984	0	lncRNA	17221-1_{1..1930}	lnc-MBOAT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MBOAT1-2:1	chr6	 19804906	 19806835	-	lnc-MBOAT1-2	lnc-MBOAT1-2:1	XLOC_005634	linc-DEK-1	NA	NA	NA	inter
LNCA_21_P0014625	6.002465	P	6.4100657	P	0.753876078955512	0	lncRNA	XR_110615	XR_110615	XR_110615	NA	Hs.496083	LOC441493	uncharacterized LOC441493	NA	THC2646024	NA	"PREDICTED: Homo sapiens hypothetical LOC441493 (LOC441493), miscRNA [XR_110615]"	chrX:47695417-47695358	hs|Xp11.23	Agilent_HUMAN_G3V2	XR_110615	XR_110615	chrX	 47695358	 47695417	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31537_PI429285431	0.8784488	A	0.887009	A	0.994084089824241	0	lncRNA	33296-1_{1..2935}	n338025|BC042527|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|412|NULL|-1.1459000|-0.3434596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338025|BC042527|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|412|NULL|-1.1459000|-0.3434596	chr1	 84444800	 84447734	-	NA	NA	NA	NA	TTLL7	"hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80chr1:84434800-84459983"	NA	inner
CUST_17293_PI429285431	0.88065326	A	0.87895155	A	1.00118023141421	0	lncRNA	19011-1_{1..981}	lnc-FRG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-FRG1-1:1	chr4	190805815	190806795	+	lnc-FRG1-1	lnc-FRG1-1:1	XLOC_003843	linc-FRG1-1	NA	NA	NA	inter
CUST_17845_PI429285431	0.9025436	A	1.6928387	A	0.578225805077819	0	lncRNA	19580-1_{1..358}	lnc-C15orf2-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-6:2	chr15	 24610332	 24610689	+	lnc-C15orf2-6	lnc-C15orf2-6:2	XLOC_011178	linc-C15orf2-4	NA	NA	NA	inter
CUST_11161_PI429285431	2.595734	A	2.413493	A	1.13464500981906	0	lncRNA	12719-1_{1..368}	lnc-AC011294.3.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC011294.3.1-1:2	chr7	 46520844	 46521211	-	lnc-AC011294.3.1-1	lnc-AC011294.3.1-1:2	XLOC_006433	linc-IGFBP3-3	NA	NA	NA	inter
CUST_51480_PI429285431	4.40752	P	2.3268628	A	4.22999864146619	0	lncRNA	55055-1_{1..632}	hg19_lincRNAsTranscripts_TCONS_l2_00009703 range=chr16:34327007-34329672 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009703 range=chr16:34327007-34329672 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 34327007	 34327638	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3652_PI429285431	0.9000174	A	1.2734114	A	0.771964280864504	0	lncRNA	3621-1_{1..452}	"transcript_id ""ENST00000366376.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000366376.2"" | genecode_v17"	chr10	 33973683	 33974134	+	ENSG00000203565.2	ENST00000366376.2	RP13-259N13.2	RP13-259N13.2-001	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
CUST_20365_PI429285431	2.3047733	A	2.9712949	A	0.630023872270059	0	lncRNA	22006-1_{1..568}	lnc-PMFBP1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PMFBP1-4:4	chr16	 72661434	 72662001	-	lnc-PMFBP1-4	lnc-PMFBP1-4:4	ENSG00000261008.2	AC004158.2	NA	NA	NA	inter
LNCA_21_P0012186	2.310369	A	2.3651965	A	0.962709545368066	0	lncRNA	TCONS_l2_00017151	NA	NA	NA	NA	XLOC_l2_009139	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009139), lincRNA [TCONS_l2_00017151]"	chr21:16207026-16206967	hs|21q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00017151	TCONS_l2_00017151	chr21	 16206967	 16207026	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25462_PI429285431	0.9104053	A	0.99084795	A	0.945767420331372	0	lncRNA	26992-1_{1..732}	lnc-FLRT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FLRT1-1:1	chr11	 63854386	 63855117	+	lnc-FLRT1-1	lnc-FLRT1-1:1	ENSG00000256481.1	RP11-21A7A.4	MACROD1	NA	chr11:63844386-63864647	inner
CUST_49988_PI429285431	2.0575244	A	2.1930766	A	0.910321336063704	0	lncRNA	53727-1_{1..2537}	hg19_lincRNAsTranscripts_TCONS_l2_00026979 range=chr7:150887330-150895717 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026979 range=chr7:150887330-150895717 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	150887330	150889866	-	NA	NA	NA	NA	ABCF2	NA	chr7:150904923-150905717	inter
LNCA_21_P0006054	0.875061	A	0.87510103	A	0.999972253703298	0	lncRNA	ENST00000454034	NA	NA	NA	NA	XLOC_007567	NA	ENST00000454034	NA	NA	"BROAD Institute lincRNA (XLOC_007567), lincRNA [TCONS_00015753]"	chr9:129281022-129281081	hs|9q33.3	Agilent_HUMAN_G3V2	ENST00000454034	ENST00000454034	chr9	129281022	129281081	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7530_PI429285431	6.1333284	P	6.4039307	P	0.828973391639992	0	lncRNA	9168-1_{1..619}	lnc-SHPRH-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SHPRH-2:8	chr6	147171961	147172579	-	lnc-SHPRH-2	lnc-SHPRH-2:8	ENSG00000233452	RP11-497D6.4	NA	NA	NA	inter
CUST_15165_PI429285431	2.3291225	A	0.8820384	A	2.72656415138484	0	lncRNA	16827-1_{1..337}	lnc-PLXDC2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLXDC2-1:3	chr10	 20898790	 20899126	+	lnc-PLXDC2-1	lnc-PLXDC2-1:3	XLOC_008408	linc-MLLT10-2	NA	NA	NA	inter
CUST_46645_PI429285431	7.636331	P	6.9657626	P	1.59169994966873	0	lncRNA	50818-1_{1..1070}	"gi|381388783|ref|NR_034105.2| Homo sapiens colorectal neoplasia differentially expressed (non-protein coding) (CRNDE), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|381388783|ref|NR_034105.2| Homo sapiens colorectal neoplasia differentially expressed (non-protein coding) (CRNDE), transcript variant 1, non-coding RNA"	Chr16	 54952775	 54953844	-	643911	NR_034105.2	NA	NA	NA	NA	NA	inter
CUST_19993_PI429285431	0.8960261	A	1.0281681	A	0.912475671971952	0	lncRNA	21646-1_{1..691}	lnc-RPS27L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS27L-1:1	chr15	 63363857	 63364547	-	lnc-RPS27L-1	lnc-RPS27L-1:1	ENSG00000259627.1	RP11-244F12.2	TPM1	NA	chr15:63353857-63364114	inner
CUST_19803_PI429285431	3.5583854	P	2.1018133	A	2.74455471322177	0	lncRNA	21460-1_{1..567}	lnc-MRPS22-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPS22-1:5	chr3	139301971	139302537	+	lnc-MRPS22-1	lnc-MRPS22-1:5	ENSG00000248932.1	RP11-319G6.1	NMNAT3	"hg19_refFlat_DTWD1:range=chr15:49917365-499357755'pad=0,hg19_refFlat_DTWD1:range=chr15:49917365-499357755'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50chr3:139291971-139312161"	NA	inner
CUST_22682_PI429285431	8.934643	P	9.379236	P	0.734791580117943	0	lncRNA	24265-1_{1..464}	lnc-PPARA-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPARA-3:1	chr22	 46452942	 46453405	+	lnc-PPARA-3	lnc-PPARA-3:1	ENSG00000241990.1	RP6-109B7.3	C22orf26	"hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-105.10chr22:46446339-46450024"	NA	inter
LNCA_21_P0010815	0.87064373	A	0.87357163	A	0.99797259234298	0	lncRNA	TCONS_l2_00002970	NA	NA	NA	NA	XLOC_l2_001548	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001548), lincRNA [TCONS_l2_00002970]"	chr10:37540594-37540653	hs|10p11.21	Agilent_HUMAN_G3V2	TCONS_l2_00002970	TCONS_l2_00002970	chr10	 37540594	 37540653	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32610_PI429285431	1.6578518	A	1.830155	A	0.8874248144965	0	lncRNA	34269-1_{1..914}	n339230|BC012463|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1662|NULL|-1.0889300|-0.3042138	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339230|BC012463|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1662|NULL|-1.0889300|-0.3042138	chr3	  3890620	  3891533	+	NA	NA	NA	NA	LRRN1	NA	chr3:3880620-3889387	inter
LNCA_21_P0006145	1.577603	A	2.0360782	A	0.727755024490491	0	lncRNA	TCONS_00015975	NA	NA	NA	NA	XLOC_007349	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007349), lincRNA [TCONS_00015975]"	chr9:38127485-38127544	hs|9p13.2	Agilent_HUMAN_G3V2	TCONS_00015975	TCONS_00015975	chr9	 38127485	 38127544	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44238_PI429285431	9.528903	P	9.1510935	P	1.29936747674919	0	lncRNA	48887-1_{1..3000}	"gi|290558672|ref|NR_033361.1| Homo sapiens transmembrane and coiled-coil domain family 1 (TMCC1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|290558672|ref|NR_033361.1| Homo sapiens transmembrane and coiled-coil domain family 1 (TMCC1), transcript variant 4, non-coding RNA"	Chr3	129366635	129369634	-	23023	NR_033361.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0007109	4.0010076	P	3.3544242	P	1.56545647801822	0	lncRNA	TCONS_00018984	NA	NA	NA	NA	XLOC_008873	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008873), lincRNA [TCONS_00018984]"	chr10:82289098-82289039	hs|10q23.1	Agilent_HUMAN_G3V2	TCONS_00018984	TCONS_00018984	chr10	 82289039	 82289098	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19286_PI429285431	0.97255826	A	0.92507356	A	1.03346153982449	0	lncRNA	20954-1_{1..403}	lnc-SDK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SDK2-1:1	chr17	 71659964	 71660366	-	lnc-SDK2-1	lnc-SDK2-1:1	ENSG00000265935.1	RP11-277J6.3	NA	NA	NA	inter
CUST_17705_PI429285431	3.1494665	A	3.25484	P	0.92956425612982	0	lncRNA	19435-1_{1..548}	lnc-KIAA1715-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1715-2:1	chr2	176749444	176749991	-	lnc-KIAA1715-2	lnc-KIAA1715-2:1	XLOC_002401	linc-ATP5G3-1	NA	NA	NA	inter
CUST_20397_PI429285431	1.4649761	A	1.0762703	A	1.30921841493401	0	lncRNA	22038-1_{1..410}	lnc-USP6-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP6-2:4	chr17	  5151069	  5151478	+	lnc-USP6-2	lnc-USP6-2:4	ENSG00000261879.1	RP11-333E1.1	NA	"hg19_refFlat_SCIMP:range=chr17:5114096-51380505'pad=0,hg19_refFlat_SCIMP:range=chr17:5114096-51380505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40"	NA	inter
CUST_4035_PI429285431	1.0221708	A	0.9771382	A	1.03170649209491	0	lncRNA	3997-1_{1..825}	"transcript_id ""ENST00000533708.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533708.1"" | genecode_v17"	chr11	 82783160	 82783984	+	ENSG00000246067.2	ENST00000533708.1	RP11-113K21.5	RP11-113K21.5-005	RAB30	NA	chr11:82773160-82782884	inter
LNCA_21_P0007239	11.0633	P	10.895426	P	1.12340178471681	0	lncRNA	TCONS_00019400	NA	NA	NA	NA	XLOC_009223	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009223), lincRNA [TCONS_00019400]"	chr11:77350930-77350989	hs|11q14.1	Agilent_HUMAN_G3V2	TCONS_00019400	TCONS_00019400	chr11	 77350930	 77350989	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27332_PI429285431	0.91812754	A	0.9399256	A	0.985004308379103	0	lncRNA	28892-1_{1..492}	n324487|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041116|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041116|-1.0732900|-0.2954300	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324487|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041116|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041116|-1.0732900|-0.2954300	chr6	 68821963	 68822454	+	NA	NA	NA	NA	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-29.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70"	NA	inter
LNCA_21_P0008701	8.616271	P	8.471645	P	1.10544404412402	0	lncRNA	TCONS_00023566	NA	NA	NA	NA	XLOC_011389	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011389), lincRNA [TCONS_00023566]"	chr15:101708836-101709271	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_00023566	TCONS_00023566	chr15	101708836	101709271	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39644_PI429285431	0.9239753	A	0.912407	A	1.00805076907721	0	lncRNA	40582-1_{1..556}	n405220|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000315832||-1.2659900|-0.2965972	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405220|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000315832||-1.2659900|-0.2965972	chr7	 27192716	 27193271	-	NA	NA	NA	NA	HOXA5	NA	chr7:27182716-27183287	inter
CUST_9124_PI429285431	0.9102829	A	1.340236	A	0.742285915600272	0	lncRNA	10643-1_{1..531}	lnc-KIAA1147-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1147-2:4	chr7	141437998	141438528	-	lnc-KIAA1147-2	lnc-KIAA1147-2:4	ENSG00000228775	RP5-894A10.5	WEE2	NA	chr7:141427998-141431071	inter
CUST_10668_PI429285431	3.1040277	A	3.5071502	P	0.756219784893365	0	lncRNA	12201-1_{1..611}	lnc-ZNF492-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ZNF492-1:1	chr19	 22716018	 22716628	+	lnc-ZNF492-1	lnc-ZNF492-1:1	XLOC_013014	linc-ZNF492-1	NA	NA	NA	inter
CUST_26576_PI429285431	1.6225448	A	1.4610159	A	1.11847181378146	0	lncRNA	28080-1_{1..829}	lnc-AMPD3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AMPD3-1:3	chr11	 10621276	 10622104	+	lnc-AMPD3-1	lnc-AMPD3-1:3	ENSG00000177112.3	MRVI1-AS1	MRVI1	"hg19_refFlat_MRVI1:range=chr11:10597879-106737695'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-106737695'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_MRVI1:range=chr11:10597879-107151495'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-107151495'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_MRVI1:range=chr11:10597879-106479355'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-106479355'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_MRVI1:range=chr11:10597879-106555705'pad=0,hg19_refFlat_MRVI1:range=chr11:10597879-106555705'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50chr11:10611276-10631453"	NA	inner
CUST_51856_PI429285431	1.512031	A	2.4439085	A	0.524175743908946	0	lncRNA	55410-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00013179 range=chr19:50993628-51003656 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013179 range=chr19:50993628-51003656 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 50996628	 50999627	-	NA	NA	NA	NA	JOSD2	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10chr19:51009259-51013656"	NA	inter
LNCA_19_P00317447	9.573686	P	9.130604	P	1.35950551137859	0	lncRNA	ENST00000473756	XR_108458	XR_108458	NA	Hs.307772	XLOC_002736	0	ENST00000473756	THC2673174	NA	"PREDICTED: Homo sapiens hypothetical LOC100506377 (LOC100506377), miscRNA [XR_108458]"	chr3:98700171-98700230	hs|3q12.1	Agilent_HUMAN_G3V2	ENST00000473756	ENST00000473756	chr3	 98700171	 98700230	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33781_PI429285431	8.396763	P	9.315394	P	0.529010770284543	0	lncRNA	35334-1_{1..2700}	n340568|AK024229|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3030|NULL|-0.9033330|-0.1620876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340568|AK024229|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3030|NULL|-0.9033330|-0.1620876	chr17	 21320481	 21323180	+	NA	NA	NA	NA	KCNJ12	NA	chr17:21310481-21323179	inner
CUST_30285_PI429285431	8.276642	P	7.88484	P	1.31203117495437	0	lncRNA	32061-1_{1..272}	n335181|AY429521|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254609|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254609|1.3174300|-0.0896054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335181|AY429521|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254609|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254609|1.3174300|-0.0896054	chr21	 42617885	 42618156	+	NA	NA	NA	NA	BACE2	NA	chr21:42607885-42648524	inner
CUST_16941_PI429285431	1.2329004	A	0.92341346	A	1.23926690591744	0	lncRNA	18653-1_{1..352}	lnc-ABCD3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABCD3-4:1	chr1	 94610927	 94611278	+	lnc-ABCD3-4	lnc-ABCD3-4:1	XLOC_000299	linc-ABCD3-3	NA	NA	NA	inter
LNCA_21_P0009524	0.87761265	A	2.1765933	A	0.406413251931869	0	lncRNA	THC2767827	NA	NA	NA	NA	XLOC_012761	NA	NA	THC2767827	NA	"BROAD Institute lincRNA (XLOC_012761), lincRNA [TCONS_00026416]"	chr18:010371454-010371396	hs|18p11.22	Agilent_HUMAN_G3V2	THC2767827	THC2767827	chr18	 10371396	 10371454	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15122_PI429285431	3.0142517	A	2.3878543	A	1.54370534046165	0	lncRNA	16782-1_{1..1026}	lnc-FBXO15-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXO15-5:1	chr18	 71320837	 71321862	-	lnc-FBXO15-5	lnc-FBXO15-5:1	XLOC_012879	linc-NETO1-5	NA	NA	NA	inter
CUST_32380_PI429285431	2.157565	A	2.2823877	A	0.917116745337202	0	lncRNA	34057-1_{1..2836}	n338971|AK095796|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1399|NULL|0.3894410|-0.1334194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338971|AK095796|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1399|NULL|0.3894410|-0.1334194	chr19	 58571101	 58573936	+	NA	NA	NA	NA	ZSCAN18	"hg19_refFlat_ZSCAN18:range=chr19:58596052-586016345'pad=0,hg19_refFlat_ZSCAN18:range=chr19:58596052-586016345'pad=0 3'pad=0 strand=- repeatMasking=none,-108.70;hg19_refFlat_ZSCAN18:range=chr19:58596052-586297635'pad=0,hg19_refFlat_ZSCAN18:range=chr19:58596052-586297635'pad=0 3'pad=0 strand=- repeatMasking=none,-108.70;hg19_refFlat_ZSCAN18:range=chr19:58596052-586002025'pad=0,hg19_refFlat_ZSCAN18:range=chr19:58596052-586002025'pad=0 3'pad=0 strand=- repeatMasking=none,-108.70chr19:58595209-58607677"	NA	inner
CUST_48972_PI429285431	0.89723355	A	0.91551864	A	0.987405721582489	0	lncRNA	52811-1_{1..625}	hg19_lincRNAsTranscripts_TCONS_l2_00019681 range=chr3:193766711-193776291 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019681 range=chr3:193766711-193776291 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	193766711	193767335	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45368_PI429285431	0.89547586	A	0.89734477	A	0.998705409009629	0	lncRNA	49803-2_{3001..4059}	"gi|341915485|ref|XR_108964.2| PREDICTED: Homo sapiens SPATA31 subfamily B, member 1 (SPATA31B1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915485|ref|XR_108964.2| PREDICTED: Homo sapiens SPATA31 subfamily B, member 1 (SPATA31B1), misc_RNA"	Chr9	 84675562	 84676620	-	404770	XR_108964.3	NA	NA	NA	NA	NA	inter
CUST_49688_PI429285431	1.1676314	A	2.009091	A	0.558078665301083	0	lncRNA	53465-1_{1..582}	hg19_lincRNAsTranscripts_TCONS_l2_00027038 range=chr7:5862847-5879673 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027038 range=chr7:5862847-5879673 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  5862847	  5863428	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42129_PI429285431	2.4622426	A	0.90249586	A	2.94802087454198	0	lncRNA	44129-1_{1..75}	ENST00000581168 ncrna:miRNA chromosome:GRCh37:2:208619531:208619605:1 gene:ENSG00000264900 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581168 ncrna:miRNA chromosome:GRCh37:2:208619531:208619605:1 gene:ENSG00000264900 gene_biotype:miRNA transcript_biotype:miRNA	chr2	208619531	208619605	+	ENSG00000264900	ENST00000581168	NA	NA	FZD5	NA	chr2:208627310-208629605	inner
CUST_13887_PI429285431	0.89128566	A	0.8883751	A	1.00201948287218	0	lncRNA	15530-1_{1..1990}	lnc-NR2F2-8:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR2F2-8:9	chr15	 96049283	 96051272	+	lnc-NR2F2-8	lnc-NR2F2-8:9	XLOC_011368	linc-NR2F2-3	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.81;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90"	NA	inter
LNCA_24_P935682	0.87412316	A	0.8733622	A	1.00052759640857	0	lncRNA	XR_110905	XR_110905	XR_110905	100131541	Hs.661972	LOC100131541	uncharacterized LOC100131541	NA	THC2483816	NA	"PREDICTED: Homo sapiens hypothetical LOC100131541 (LOC100131541), miscRNA [XR_110905]"	chr11:95988484-95988425	hs|11q21	Agilent_HUMAN_G3V2	XR_110905	XR_110905	chr11	 95988425	 95988484	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6277_PI429285431	3.6055195	P	4.4668417	P	0.55044785268885	0	lncRNA	6201-1_{1..788}	"transcript_id ""ENST00000579480.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000579480.1"" | genecode_v17"	chr18	 75694976	 75695763	-	ENSG00000264334.1	ENST00000579480.1	RP11-671C19.2	RP11-671C19.2-001	NA	NA	NA	inter
CUST_45210_PI429285431	1.0650462	A	1.0683371	A	0.997721521624978	0	lncRNA	49673-1_{1..627}	"gi|410170563|ref|XR_171051.1| PREDICTED: Homo sapiens uncharacterized LOC101060153 (LOC101060153), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170563|ref|XR_171051.1| PREDICTED: Homo sapiens uncharacterized LOC101060153 (LOC101060153), misc_RNA"	Chr8	 67025522	 67026148	+	101060153	XR_171051.2	NA	NA	NA	NA	NA	inter
CUST_21197_PI429285431	7.202878	P	4.7103496	P	5.62763359352199	0	lncRNA	22822-1_{1..2930}	lnc-KLHL11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-KLHL11-1:1	chr17	 40004770	 40007699	-	lnc-KLHL11-1	lnc-KLHL11-1:1	ENSG00000259623.1	RP11-156E6.1	KLHL11	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20chr17:40009799-40017699"	NA	inter
LNCA_21_P0010830	7.05251	P	7.248929	P	0.872714093131816	0	lncRNA	AK022382	NA	AK022382	NA	Hs.450493	XLOC_l2_001597	NA	ENST00000443374	THC2571375	NA	"BROAD Institute lincRNA (XLOC_l2_001597), lincRNA [TCONS_l2_00003983]"	chr10:52391052-52391111	hs|10q11.23	Agilent_HUMAN_G3V2	AK022382	AK022382	chr10	 52391052	 52391111	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9050_PI429285431	1.3533481	A	2.1293974	A	0.583963741665518	0	lncRNA	10574-1_{1..2553}	lnc-DHX37-11:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-DHX37-11:1	chr12	127359003	127361555	-	lnc-DHX37-11	lnc-DHX37-11:1	ENSG00000249873	ENST00000507482	NA	NA	NA	inter
LNCA_21_P0001644	1.7595778	A	1.881735	A	0.918812761671272	0	lncRNA	TCONS_00001882	NA	NA	NA	NA	XLOC_001265	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001265), lincRNA [TCONS_00001882]"	chr1:235088032-235087973	hs|1q42.3	Agilent_HUMAN_G3V2	TCONS_00001882	TCONS_00001882	chr1	235087973	235088032	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45140_PI429285431	3.3627818	P	3.5950859	P	0.851274252092692	0	lncRNA	49620-1_{1..2942}	"gi|210147410|ref|NR_024281.1| Homo sapiens long intergenic non-protein coding RNA 599 (LINC00599), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|210147410|ref|NR_024281.1| Homo sapiens long intergenic non-protein coding RNA 599 (LINC00599), non-coding RNA"	NA	NA	NA	NA	NA	NR_024281.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013202	4.8224196	P	4.667309	P	1.11350697871573	0	lncRNA	TCONS_l2_00025907	NA	NA	NA	NA	XLOC_l2_013425	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013425), lincRNA [TCONS_l2_00025907]"	chr7:62672075-62672134	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025907	TCONS_l2_00025907	chr7	 62672075	 62672134	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010543	1.8407176	A	2.2718458	A	0.741681557079825	0	lncRNA	THC2538788	NA	NA	NA	NA	XLOC_l2_000343	NA	NA	THC2538788	NA	"BROAD Institute lincRNA (XLOC_l2_000343), lincRNA [TCONS_l2_00000473]"	chr1:108880502-108880561	hs|1p13.3	Agilent_HUMAN_G3V2	THC2538788	THC2538788	chr1	108880502	108880561	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5388_PI429285431	1.4811989	A	1.9639479	A	0.715612751446856	0	lncRNA	5322-1_{1..1864}	"transcript_id ""ENST00000568091.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568091.1"" | genecode_v17"	chr16	  1310953	  1312816	-	ENSG00000196364.7	ENST00000568091.1	PRSS29P	PRSS29P-001	UBE2I	NA	chr16:1311004-1323846	inter
CUST_23680_PI429285431	3.9943275	P	4.5103574	P	0.699293548289839	0	lncRNA	25245-1_{1..1067}	lnc-CTNNA1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTNNA1-2:4	chr5	138357520	138358586	+	lnc-CTNNA1-2	lnc-CTNNA1-2:4	ENSG00000249593.2	CTB-46B19.2	SIL1	"hg19_refFlat_SIL1:range=chr5:138282806-1384635325'pad=0,hg19_refFlat_SIL1:range=chr5:138282806-1384635325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40chr5:138347520-138368297"	NA	inner
LNCA_21_P0005823	7.5129147	P	7.849495	P	0.791916211775452	0	lncRNA	TCONS_00014981	NA	NA	NA	NA	XLOC_007062	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007062), lincRNA [TCONS_00014981]"	chr8:39274781-39267820	hs|8p11.22	Agilent_HUMAN_G3V2	TCONS_00014981	TCONS_00014981	chr8	 39267820	 39274781	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49485_PI429285431	8.96607	P	8.903431	P	1.04437440039897	0	lncRNA	53277-1_{1..1635}	hg19_lincRNAsTranscripts_TCONS_l2_00023999 range=chr6:4688321-4704080 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023999 range=chr6:4688321-4704080 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	  4688321	  4689955	+	NA	NA	NA	NA	CDYL	NA	chr6:4702676-4714080	inter
CUST_44986_PI429285431	7.0699635	P	6.973276	P	1.06931543999071	0	lncRNA	49495-1_{1..614}	"gi|392050761|ref|NR_003614.2| Homo sapiens postmeiotic segregation increased 2-like 2 pseudogene (PMS2L2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392050761|ref|NR_003614.2| Homo sapiens postmeiotic segregation increased 2-like 2 pseudogene (PMS2L2), non-coding RNA"	NW_003871064.1	  2873173	  2873786	-	5380	NR_003614.3	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008320	0.90947425	A	0.9382199	A	0.980272224047472	0	lncRNA	TCONS_00022471	NA	NA	NA	NA	XLOC_010800	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010800), lincRNA [TCONS_00022471]"	chr14:36931404-36931463	hs|14q13.3	Agilent_HUMAN_G3V2	TCONS_00022471	TCONS_00022471	chr14	 36931404	 36931463	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35854_PI429285431	1.3997781	A	1.1848077	A	1.16068010028411	0	lncRNA	37250-1_{1..2654}	n344521|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_69|NULL|-1.5134100|-0.2623827	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344521|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_69|NULL|-1.5134100|-0.2623827	chr1	142618891	142621544	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9590_PI429285431	4.7434835	P	4.801963	P	0.960275649782514	0	lncRNA	11106-1_{1..428}	lnc-C6orf70-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C6orf70-3:1	chr6	170345325	170345752	+	lnc-C6orf70-3	lnc-C6orf70-3:1	XLOC_005558	linc-FAM120B-7	NA	NA	NA	inter
CUST_7907_PI429285431	2.0866187	A	1.6534071	A	1.35023600963939	0	lncRNA	9522-1_{1..1747}	lnc-SLC39A11-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC39A11-1:3	chr17	 70588342	 70590088	-	lnc-SLC39A11-1	lnc-SLC39A11-1:3	ENSG00000227036	XLOC_012568	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30"	NA	inter
CUST_41653_PI429285431	2.6459284	A	2.4389858	A	1.15423949328264	0	lncRNA	43069-1_{1..81}	ENST00000401147 ncrna:miRNA chromosome:GRCh37:9:28863624:28863704:-1 gene:ENSG00000215966 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401147 ncrna:miRNA chromosome:GRCh37:9:28863624:28863704:-1 gene:ENSG00000215966 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 28863624	 28863704	-	ENSG00000215966	ENST00000401147	NA	NA	NA	NA	NA	inner
CUST_17434_PI429285431	1.156904	A	1.0145997	A	1.10366650600543	0	lncRNA	19158-1_{1..269}	lnc-SMCHD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMCHD1-1:1	chr18	  2637126	  2637394	+	lnc-SMCHD1-1	lnc-SMCHD1-1:1	XLOC_012610	linc-SMCHD1	NA	NA	NA	inter
CUST_49911_PI429285431	3.2010944	P	3.0179546	P	1.13535211467895	0	lncRNA	53660-1_{1..809}	hg19_lincRNAsTranscripts_TCONS_l2_00026767 range=chr7:97557399-97574856 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026767 range=chr7:97557399-97574856 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 97557399	 97558207	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12102_PI429285431	0.9132806	A	1.3752754	A	0.725981756650712	0	lncRNA	13698-1_{1..1262}	lnc-ALK-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALK-2:2	chr2	 30523143	 30524404	-	lnc-ALK-2	lnc-ALK-2:2	XLOC_002040	linc-ALK-1	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50"	NA	inter
LNCA_21_P0012990	4.4569383	P	4.2772784	P	1.13261685145456	0	lncRNA	ENST00000507733	NA	NA	NA	NA	XLOC_l2_012071	NA	ENST00000507733	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012071), lincRNA [TCONS_l2_00023764]"	chr5:67726313-67726254	hs|5q13.1	Agilent_HUMAN_G3V2	ENST00000507733	ENST00000507733	chr5	 67726254	 67726313	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50694_PI429285431	0.91355693	A	0.91762334	A	0.9971853479551	0	lncRNA	54365-1_{1..572}	hg19_lincRNAsTranscripts_TCONS_l2_00003560 range=chr10:49272327-49275670 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003560 range=chr10:49272327-49275670 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 49272327	 49272898	-	NA	NA	NA	NA	FRMPD2	NA	chr10:49262327-49285670	inter
CUST_49183_PI429285431	4.7671056	P	4.3279724	P	1.3557894972757	0	lncRNA	53007-1_{1..473}	hg19_lincRNAsTranscripts_TCONS_l2_00021735 range=chr4:144493566-144494827 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021735 range=chr4:144493566-144494827 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	144493566	144494038	+	NA	NA	NA	NA	FREM3	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20chr4:144498560-144504827"	NA	inter
CUST_1936_PI429285431	0.900045	A	0.91546357	A	0.989369568369009	0	lncRNA	1928-1_{1..481}	"transcript_id ""ENST00000507849.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507849.1"" | genecode_v17"	chr4	149948597	149949077	-	ENSG00000249752.1	ENST00000507849.1	RP11-563M4.1	RP11-563M4.1-001	NA	NA	NA	inter
CUST_39262_PI429285431	4.71812	P	4.1449676	P	1.48777091575232	0	lncRNA	40234-1_{1..1210}	n386160|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010cfp.1||6.5773100|-0.3822485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386160|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010cfp.1||6.5773100|-0.3822485	chr16	 70263706	 70264915	-	NA	NA	NA	NA	LOC100506060	NA	chr16:70263707-70269266	inter
CUST_19886_PI429285431	1.5218844	A	1.0913203	A	1.34776045401934	0	lncRNA	21542-1_{1..648}	lnc-CD59-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CD59-1:1	chr11	 33718132	 33718779	-	lnc-CD59-1	lnc-CD59-1:1	ENSG00000255202.1	RP4-541C22.5	CD59	NA	chr11:33724556-33728247	inter
CUST_32361_PI429285431	2.3805034	A	0.88404566	A	2.82149098498628	0	lncRNA	34039-1_{1..2051}	n338944|BC040633|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1372|NULL|-0.9229130|-0.2570834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338944|BC040633|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1372|NULL|-0.9229130|-0.2570834	chr2	120234029	120236079	+	NA	NA	NA	NA	SCTR	NA	chr2:120224029-120254922	inner
LNCA_33_P3369436	7.056444	P	7.7469807	P	0.619623299728549	0	lncRNA	XR_109206	XR_109206	XR_109206	100130111	Hs.525720	LOC100130111	uncharacterized LOC100130111	NA	THC2620931	NA	"PREDICTED: Homo sapiens hypothetical LOC100130111 (LOC100130111), miscRNA [XR_109206]"	chr15:29969579-29969638	hs|15q13.1	Agilent_HUMAN_G3V2	XR_109206	XR_109206	chr15	 29969579	 29969638	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23927_PI429285431	14.550859	P	15.287626	P	0.600082598676759	0	lncRNA	25484-1_{1..640}	lnc-SLC4A10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC4A10-2:1	chr2	162931294	162931933	+	lnc-SLC4A10-2	lnc-SLC4A10-2:1	ENSG00000230918.1	AC008063.2	DPP4	"hg19_refFlat_DPP4:range=chr2:162849793-1629304915'pad=0,hg19_refFlat_DPP4:range=chr2:162849793-1629304915'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90chr2:162921294-162931052"	NA	inter
LNCA_21_P0013514	7.194421	P	4.9849496	P	4.62505781505105	0	lncRNA	TCONS_l2_00028188	NA	NA	NA	NA	XLOC_l2_014504	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014504), lincRNA [TCONS_l2_00028188]"	chr8:47505181-47505122	hs|8q11.1	Agilent_HUMAN_G3V2	TCONS_l2_00028188	TCONS_l2_00028188	chr8	 47505122	 47505181	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48717_PI429285431	7.593198	P	7.6206713	P	0.981137132764372	0	lncRNA	52559-1_{1..503}	hg19_lincRNAsTranscripts_TCONS_l2_00013969 range=chr2:128145798-128146981 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013969 range=chr2:128145798-128146981 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	128145798	128146300	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44441_PI429285431	6.0856795	P	6.507753	P	0.746351166836158	0	lncRNA	49051-1_{1..1106}	"gi|359718975|ref|NR_045605.1| Homo sapiens meiotic nuclear divisions 1 homolog (S. cerevisiae) (MND1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|359718975|ref|NR_045605.1| Homo sapiens meiotic nuclear divisions 1 homolog (S. cerevisiae) (MND1), transcript variant 3, non-coding RNA"	Chr4	154265801	154266906	+	84057	NR_045605.1	NA	NA	NA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00"	NA	inter
CUST_44707_PI429285431	8.859991	P	10.075407	P	0.430648884678024	0	lncRNA	49262-2_{3001..4543}	"gi|393715057|ref|NR_072994.1| Homo sapiens protein phosphatase 1, regulatory subunit 10 (PPP1R10), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393715057|ref|NR_072994.1| Homo sapiens protein phosphatase 1, regulatory subunit 10 (PPP1R10), transcript variant 2, non-coding RNA"	NT_167249.1	  1903456	  1904998	-	5514	NR_072994.1	NA	NA	NA	NA	NA	Unknown
CUST_18028_PI429285431	0.8843867	A	0.8867488	A	0.998364056661327	0	lncRNA	19762-1_{1..445}	lnc-FAR1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAR1-1:2	chr11	 13869254	 13869698	+	lnc-FAR1-1	lnc-FAR1-1:2	XLOC_009070	linc-SPON1	NA	NA	NA	inter
CUST_27069_PI429285431	4.0468855	P	4.1542225	P	0.928299984828317	0	lncRNA	28601-1_{1..2698}	n324178|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322673|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322673|-1.0818900|-0.3024688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324178|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322673|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322673|-1.0818900|-0.3024688	chr7	155923243	155925940	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008188	0.8734133	A	0.87530756	A	0.998687860630398	0	lncRNA	TCONS_00022067	NA	NA	NA	NA	XLOC_010672	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010672), lincRNA [TCONS_00022067]"	chr13:81795328-81795269	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00022067	TCONS_00022067	chr13	 81795269	 81795328	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18319_PI429285431	1.1639504	A	0.9180684	A	1.18581750580921	0	lncRNA	20046-1_{1..374}	lnc-RP11-17A1.2.1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-17A1.2.1-1:7	chr11	 22879468	 22879841	-	lnc-RP11-17A1.2.1-1	lnc-RP11-17A1.2.1-1:7	ENSG00000255359	RP11-17A1.2	LOC100500938	NA	chr11:22869468-22881972	inner
CUST_14391_PI429285431	0.9007709	A	0.90489155	A	0.99714785817728	0	lncRNA	16053-1_{1..1325}	lnc-CLEC18B-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLEC18B-3:3	chr16	 74249733	 74251057	-	lnc-CLEC18B-3	lnc-CLEC18B-3:3	XLOC_012007	linc-ZFHX3-2	NA	NA	NA	inter
LNCA_19_P00326532	0.87324417	A	0.8735167	A	0.999811114440006	0	lncRNA	XR_108884	XR_108884	XR_108884	NA	Hs.633137	LOC100507018	NA	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507018 (LOC100507018), miscRNA [XR_108884]"	chr8:125476618-125476559	hs|8q24.13	Agilent_HUMAN_G3V2	XR_108884	XR_108884	chr8	125476559	125476618	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32155_PI429285431	0.89661735	A	1.288129	A	0.76233041914714	0	lncRNA	33855-1_{1..709}	n338722|BC015979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1142|NULL|-1.2213100|-0.3311848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338722|BC015979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1142|NULL|-1.2213100|-0.3311848	chr19	 46334192	 46334900	+	NA	NA	NA	NA	SYMPK	"hg19_refFlat_SYMPK:range=chr19:46318818-463577535'pad=0,hg19_refFlat_SYMPK:range=chr19:46318818-463577535'pad=0 3'pad=0 strand=- repeatMasking=none,-99.30chr19:46324192-46344711"	NA	inner
LNCA_21_P0014295	5.5727444	P	5.6642814	P	0.938522345471122	0	lncRNA	XR_109196	XR_109196	XR_109196	NA	Hs.493512	LOC100506294	uncharacterized LOC100506294	NA	THC2680341	NA	"PREDICTED: Homo sapiens hypothetical LOC100506294, transcript variant 2 (LOC100506294), miscRNA [XR_109196]"	chr15:55609935-55609876	hs|15q21.3	Agilent_HUMAN_G3V2	XR_109196	XR_109196	chr15	 55609876	 55609935	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014334	11.020298	P	10.576842	P	1.35985799125669	0	lncRNA	XR_109331	XR_109331	XR_109331	NA	NA	LOC100506521	uncharacterized LOC100506521	NA	THC2780969	NA	"PREDICTED: Homo sapiens hypothetical LOC100506521 (LOC100506521), miscRNA [XR_109331]"	chr16:85826446-85826505	hs|16q24.1	Agilent_HUMAN_G3V2	XR_109331	XR_109331	chr16	 85826446	 85826505	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32634_PI429285431	5.182273	P	3.4544203	P	3.31234443578573	0	lncRNA	34293-1_{1..3000}	n339259|AK091226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1691|NULL|-1.1905600|-0.3210384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339259|AK091226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1691|NULL|-1.1905600|-0.3210384	chr3	 15087057	 15090056	+	NA	NA	NA	NA	NR2C2	NA	chr3:15077057-15090780	inner
CUST_10359_PI429285431	0.9016869	A	0.904347	A	0.998157858015183	0	lncRNA	11884-2_{3001..3465}	lnc-AC114947.1.1-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC114947.1.1-2:8	chr5	 43083002	 43083466	+	lnc-AC114947.1.1-2	lnc-AC114947.1.1-2:8	XLOC_004366	linc-ZNF131-1	NA	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60"	NA	inter
CUST_25763_PI429285431	0.8980299	A	0.9038414	A	0.995979877574756	0	lncRNA	27288-1_{1..653}	lnc-UXS1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UXS1-4:1	chr2	106473589	106474241	-	lnc-UXS1-4	lnc-UXS1-4:1	ENSG00000235522.1	AC009505.2	NCK2	"hg19_refFlat_NCK2:range=chr2:106471520-1065094635'pad=0,hg19_refFlat_NCK2:range=chr2:106471520-1065094635'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.20;hg19_refFlat_NCK2:range=chr2:106471520-1065096325'pad=0,hg19_refFlat_NCK2:range=chr2:106471520-1065096325'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.20chr2:106463589-106483633"	NA	inner
LNCA_21_P0012419	0.8849557	A	0.8736463	A	1.00786988474577	0	lncRNA	TCONS_l2_00019075	NA	NA	NA	NA	XLOC_l2_010056	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010056), lincRNA [TCONS_l2_00019075]"	chr3:194448307-194448366	hs|3q29	Agilent_HUMAN_G3V2	TCONS_l2_00019075	TCONS_l2_00019075	chr3	194448307	194448366	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38382_PI429285431	0.8916309	A	0.89626133	A	0.996795575662848	0	lncRNA	39421-1_{1..2237}	n382284|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001you.1||1.7589600|-0.1306961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382284|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001you.1||1.7589600|-0.1306961	chr14	104975961	104978197	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
CUST_17502_PI429285431	0.89127195	A	0.8817994	A	1.0065874739124	0	lncRNA	19227-1_{1..742}	lnc-FOXA2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXA2-1:2	chr20	 22588586	 22589327	-	lnc-FOXA2-1	lnc-FOXA2-1:2	XLOC_013685	linc-FOXA2-2	NA	NA	NA	inter
CUST_31101_PI429285431	0.8741141	A	0.8741141	A	1	0	lncRNA	32892-1_{1..293}	n337383|DQ655971|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393084|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393084|-1.3938700|-0.1550006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337383|DQ655971|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393084|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393084|-1.3938700|-0.1550006	chr5	131877758	131878050	-	NA	NA	NA	NA	RAD50	NA	chr5:131892616-131902550	inner
LNCA_21_P0008438	0.8749958	A	0.89817256	A	0.984063446509436	0	lncRNA	TCONS_00022745	NA	NA	NA	NA	XLOC_011023	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011023), lincRNA [TCONS_00022745]"	chr14:52726066-52656515	hs|14q22.1	Agilent_HUMAN_G3V2	TCONS_00022745	TCONS_00022745	chr14	 52656515	 52726066	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19172_PI429285431	0.907733	A	1.1956788	A	0.81906746848123	0	lncRNA	20841-1_{1..629}	lnc-PPP1R14D-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP1R14D-1:2	chr15	 41136377	 41137005	-	lnc-PPP1R14D-1	lnc-PPP1R14D-1:2	ENSG00000261183.1	RP11-532F12.5	SPINT1	NA	chr15:41136246-41146530	inner
LNCA_21_P0008628	0.8741264	A	0.8758517	A	0.998804827957072	0	lncRNA	BC043275	NA	BC043275	NA	Hs.721477	XLOC_011228	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011228), lincRNA [TCONS_00023386]"	chr15:42266153-42273558	hs|15q15.1	Agilent_HUMAN_G3V2	BC043275	BC043275	chr15	 42266153	 42273558	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33733_PI429285431	9.905228	P	10.244331	P	0.790532675173194	0	lncRNA	35291-1_{1..3000}	n340512|BX649083|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2974|NULL|-0.6643050|-0.2855473	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340512|BX649083|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2974|NULL|-0.6643050|-0.2855473	chr17	 12663450	 12666449	-	NA	NA	NA	NA	MYOCD	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.91;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MYOCD:range=chr17:12569506-126669615'pad=0,hg19_refFlat_MYOCD:range=chr17:12569506-126669615'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10chr17:12653450-12670651"	NA	inner
CUST_36490_PI429285431	0.8962866	A	0.9195432	A	0.984008989088164	0	lncRNA	37692-1_{1..870}	n344992|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_541|NULL|-1.2978700|-0.2418720	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344992|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_541|NULL|-1.2978700|-0.2418720	chr8	 16982524	 16983393	+	NA	NA	NA	NA	EFHA2	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60chr8:16972524-16980148"	NA	inter
CUST_6753_PI429285431	10.647218	P	11.081451	P	0.74008711284166	0	lncRNA	6701-1_{1..1466}	"transcript_id ""ENST00000358393.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000358393.1"" | genecode_v17"	chr20	 62669493	 62670958	+	ENSG00000196421.3	ENST00000358393.1	LINC00176	LINC00176-003	PRPF6	NA	chr20:62659493-62664453	inter
CUST_19728_PI429285431	0.9167147	A	0.9151732	A	1.00106905741377	0	lncRNA	21386-1_{1..1738}	lnc-LILRA5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LILRA5-1:1	chr19	 54848112	 54849849	-	lnc-LILRA5-1	lnc-LILRA5-1:1	ENSG00000248166.1	AC008984.2	LILRA4	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10chr19:54844692-54850421"	NA	inner
LNCA_21_P0014818	0.90570855	A	0.92845666	A	0.984355872459119	0	lncRNA	XR_132657	XR_132657	XR_132657	NA	Hs.654329	LOC100286969	uncharacterized LOC100286969	NA	THC2642397	NA	"PREDICTED: Homo sapiens hypothetical LOC100286969 (LOC100286969), miscRNA [XR_132657]"	chr19:44876591-44876650	hs|19q13.31	Agilent_HUMAN_G3V2	XR_132657	XR_132657	chr19	 44876591	 44876650	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49944_PI429285431	7.2472563	P	6.9436994	P	1.23418348956252	0	lncRNA	53694-1_{1..2105}	hg19_lincRNAsTranscripts_TCONS_l2_00026188 range=chr7:128103508-128110691 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026188 range=chr7:128103508-128110691 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	128103508	128105612	+	NA	NA	NA	NA	METTL2B	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40chr7:128116783-128120691"	NA	inter
CUST_49348_PI429285431	0.9154088	A	0.93127793	A	0.989060632149421	0	lncRNA	53161-1_{1..2267}	hg19_lincRNAsTranscripts_TCONS_l2_00022369 range=chr5:74921741-74968105 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022369 range=chr5:74921741-74968105 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 74921741	 74924007	+	NA	NA	NA	NA	POC5	NA	chr5:74970023-74978105	inner
CUST_6948_PI429285431	3.164992	P	2.5830588	A	1.49685367752238	0	lncRNA	6897-1_{1..917}	"transcript_id ""ENST00000449711.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449711.1"" | genecode_v17"	chr22	 23775751	 23776667	+	ENSG00000234928.1	ENST00000449711.1	AP000344.3	AP000344.3-001	NA	NA	NA	inter
LNCA_21_P0009888	2.2347243	A	1.9948106	A	1.18092201821284	0	lncRNA	CR627206	NA	CR627206	NA	Hs.143562	XLOC_013679	NA	ENST00000420928	NA	NA	"BROAD Institute lincRNA (XLOC_013679), lincRNA [TCONS_00028017]"	chr20:22260937-22260878	hs|20p11.22	Agilent_HUMAN_G3V2	CR627206	CR627206	chr20	 22260878	 22260937	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11826_PI429285431	0.9109925	A	0.9265026	A	0.989306801033259	0	lncRNA	13408-1_{1..268}	lnc-CABLES1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CABLES1-1:1	chr18	 20686169	 20686436	+	lnc-CABLES1-1	lnc-CABLES1-1:1	XLOC_012638	linc-CABLES1	NA	NA	NA	inter
CUST_12165_PI429285431	0.9011981	A	0.9118183	A	0.992665666773205	0	lncRNA	13764-1_{1..601}	lnc-IVNS1ABP-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IVNS1ABP-2:6	chr1	185597539	185598139	-	lnc-IVNS1ABP-2	lnc-IVNS1ABP-2:6	XLOC_001126	linc-IVNS1ABP	NA	NA	NA	inter
CUST_30308_PI429285431	5.087102	P	5.8575892	P	0.586219474103082	0	lncRNA	32084-1_{1..237}	n335215|AY536246|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255240|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255240|1.0816400|-0.1161163	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335215|AY536246|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255240|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255240|1.0816400|-0.1161163	chr22	 23603119	 23603355	+	NA	NA	NA	NA	BCR	NA	chr22:23593119-23637298	inner
LNCA_21_P0006671	0.90508133	A	0.9268709	A	0.985010104968783	0	lncRNA	ENST00000457804	NA	NA	NA	NA	XLOC_008452	NA	ENST00000457804	NA	NA	"BROAD Institute lincRNA (XLOC_008452), lincRNA [TCONS_00017813]"	chr10:37232782-37232841	hs|10p11.21	Agilent_HUMAN_G3V2	ENST00000457804	ENST00000457804	chr10	 37232782	 37232841	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6728_PI429285431	0.8988447	A	0.9379075	A	0.973287006400252	0	lncRNA	6676-1_{1..841}	"transcript_id ""ENST00000598445.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598445.1"" | genecode_v17"	chr20	 54039558	 54040398	+	ENSG00000235166.2	ENST00000598445.1	RP5-1010E17.1	RP5-1010E17.1-003	NA	NA	NA	inter
CUST_5402_PI429285431	2.432906	A	2.5515985	A	0.921021985451766	0	lncRNA	5336-1_{1..789}	"transcript_id ""ENST00000566085.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566085.1"" | genecode_v17"	chr16	  2506253	  2507041	-	ENSG00000260874.1	ENST00000566085.1	RP11-715J22.4	RP11-715J22.4-002	CCNF	"hg19_refFlat_CCNF:range=chr16:2479483-25070215'pad=0,hg19_refFlat_CCNF:range=chr16:2479483-25070215'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.90chr16:2496253-2508859"	NA	inner
LNCA_21_P0014159	5.4836974	P	5.3483224	P	1.09837827836257	0	lncRNA	ENST00000445172	XR_108641	XR_108641	NA	NA	LOC100505550	NA	ENST00000445172	THC2683370	NA	"PREDICTED: Homo sapiens hypothetical LOC100505550 (LOC100505550), miscRNA [XR_108641]"	chr6:37511399-37511340	hs|6p21.2	Agilent_HUMAN_G3V2	ENST00000445172	ENST00000445172	chr6	 37511340	 37511399	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014144	4.137163	P	4.125343	P	1.00822665414362	0	lncRNA	XR_108581	XR_108581	XR_108581	NA	NA	LOC100506858	uncharacterized LOC100506858	NA	THC2672052	NA	"PREDICTED: Homo sapiens hypothetical LOC100506858 (LOC100506858), miscRNA [XR_108581]"	chr5:2303893-2303834	hs|5p15.33	Agilent_HUMAN_G3V2	XR_108581	XR_108581	chr5	  2303834	  2303893	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013749	0.8881347	A	0.9035876	A	0.989346025865423	0	lncRNA	TCONS_l2_00030123	NA	NA	NA	NA	XLOC_l2_015441	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015441), lincRNA [TCONS_l2_00030123]"	chrX:2537548-2537607	hs|Xp22.33	Agilent_HUMAN_G3V2	TCONS_l2_00030123	TCONS_l2_00030123	chrX	  2537548	  2537607	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19386_PI429285431	4.55675	P	4.97417	P	0.748762454394135	0	lncRNA	21048-1_{1..1098}	lnc-OR14I1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-OR14I1-1:1	chr1	248884571	248885668	-	lnc-OR14I1-1	lnc-OR14I1-1:1	ENSG00000232694.2	XX-CR54.3	NA	NA	NA	inter
LNCA_21_P0014557	2.000273	A	0.90083605	A	2.14271051226494	0	lncRNA	ENST00000554475	XR_110293	XR_110293	NA	NA	LOC100506566	NA	ENST00000554475	THC2637404	NA	"PREDICTED: Homo sapiens hypothetical LOC100506566 (LOC100506566), miscRNA [XR_110293]"	chr14:51557661-51557720	hs|14q22.1	Agilent_HUMAN_G3V2	ENST00000554475	ENST00000554475	chr14	 51557661	 51557720	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_58_PI429201921	1.5363657	A	0.9633283	A	1.48765232739404	0	lncRNA	60-1_{1..1697}	TC17002091.hg.1	TCONS_l2_00011528-XLOC_l2_005687 // Broad TUCP // linc-LGALS9C-2 chr17:+:18343221-18344919 // chr17 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr17:+:18343221-18344919	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00011528-XLOC_l2_005687	linc-LGALS9C-2	chr17	 18343221	 18344919	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36055_PI429285431	1.6076458	A	1.4468454	A	1.11790717537459	0	lncRNA	37370-1_{1..2630}	n344652|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_200|NULL|-1.3403500|-0.4198757	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344652|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_200|NULL|-1.3403500|-0.4198757	chr6	141128739	141131368	-	NA	NA	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40"	NA	inter
LNCA_21_P0010975	5.786628	P	6.3936224	P	0.656563111238399	0	lncRNA	TCONS_l2_00004520	NA	NA	NA	NA	XLOC_l2_002311	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002311), lincRNA [TCONS_l2_00004520]"	chr11:50274754-50280130	hs|11p11.12	Agilent_HUMAN_G3V2	TCONS_l2_00004520	TCONS_l2_00004520	chr11	 50274754	 50280130	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41740_PI429285431	0.87901837	A	0.88333344	A	0.997013489915894	0	lncRNA	43273-1_{1..79}	ENST00000584117 ncrna:miRNA chromosome:GRCh37:15:26093894:26093972:-1 gene:ENSG00000266517 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584117 ncrna:miRNA chromosome:GRCh37:15:26093894:26093972:-1 gene:ENSG00000266517 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 26093894	 26093972	-	ENSG00000266517	ENST00000584117	NA	NA	ATP10A	NA	chr15:26083894-26103972	inner
CUST_34362_PI429285431	0.9102457	A	0.90042186	A	1.00683260344963	0	lncRNA	35850-1_{1..3000}	n341231|BX647937|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3699|NULL|2.4491100|-0.3552571	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341231|BX647937|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3699|NULL|2.4491100|-0.3552571	chr7	 41004276	 41007275	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40696_PI429285431	5.5068593	P	5.6641903	P	0.896682408675601	0	lncRNA	41433-1_{1..1360}	n410256|NR_037174|lncRNA|Homosapiens||RefGeneNoncode|NR_037174||-0.6770150|-0.2755440	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410256|NR_037174|lncRNA|Homosapiens||RefGeneNoncode|NR_037174||-0.6770150|-0.2755440	chr6	 32811862	 32813221	+	NA	NA	NA	NA	TAP2	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TAP1:range=chr6_mann_hap4:4270552-42787895'pad=0,hg19_refFlat_TAP1:range=chr6_mann_hap4:4270552-42787895'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_qbl_hap6:4045463-40537005'pad=0,hg19_refFlat_TAP1:range=chr6_qbl_hap6:4045463-40537005'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_dbb_hap3:4094734-41029715'pad=0,hg19_refFlat_TAP1:range=chr6_dbb_hap3:4094734-41029715'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_cox_hap2:4257884-42661215'pad=0,hg19_refFlat_TAP1:range=chr6_cox_hap2:4257884-42661215'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6:32813356-328215935'pad=0,hg19_refFlat_TAP1:range=chr6:32813356-328215935'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_ssto_hap7:4244129-42523665'pad=0,hg19_refFlat_TAP1:range=chr6_ssto_hap7:4244129-42523665'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_mcf_hap5:4150233-41584705'pad=0,hg19_refFlat_TAP1:range=chr6_mcf_hap5:4150233-41584705'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_apd_hap1:4100360-41085975'pad=0,hg19_refFlat_TAP1:range=chr6_apd_hap1:4100360-41085975'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80chr6:32801862-32806547"	NA	inner
LNCA_21_P0002623	0.8757408	A	0.8816389	A	0.995920094137297	0	lncRNA	TCONS_00004985	NA	NA	NA	NA	XLOC_001823	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001823), lincRNA [TCONS_00004985]"	chr2:207799584-207799643	hs|2q33.3	Agilent_HUMAN_G3V2	TCONS_00004985	TCONS_00004985	chr2	207799584	207799643	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32666_PI429285431	2.0755632	A	3.2110758	P	0.455173161739335	0	lncRNA	34317-1_{1..1691}	n339292|AK130816|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1724|NULL|-1.2045000|-0.3359594	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339292|AK130816|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1724|NULL|-1.2045000|-0.3359594	chr16	 75607137	 75608827	+	NA	NA	NA	NA	GABARAPL2	"hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50chr16:75600249-75611779"	NA	inner
CUST_28966_PI429285431	0.90148985	A	0.90545046	A	0.997258479195881	0	lncRNA	30688-1_{1..594}	n326398|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000102089|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000102089|-1.1316300|-0.3605613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326398|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000102089|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000102089|-1.1316300|-0.3605613	chr1	144940358	144940951	-	NA	NA	NA	NA	PDE4DIP	NA	chr1:144930358-144951367	inner
CUST_10101_PI429285431	0.88693446	A	0.893125	A	0.995718237648141	0	lncRNA	11624-1_{1..762}	lnc-TPO-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPO-1:2	chr2	  1557942	  1558703	+	lnc-TPO-1	lnc-TPO-1:2	XLOC_001313	linc-TTC15-9	NA	NA	NA	inter
CUST_31612_PI429285431	3.5550466	P	3.5571263	P	0.998559500325687	0	lncRNA	33368-1_{1..607}	n338126|AF086464|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|514|NULL|-1.2125300|-0.3018495	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338126|AF086464|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|514|NULL|-1.2125300|-0.3018495	chr1	110880022	110880628	+	NA	NA	NA	NA	RBM15	NA	chr1:110881945-110889303	inter
CUST_44466_PI429285431	3.6693962	P	3.7442608	P	0.949431222910144	0	lncRNA	49070-1_{1..2521}	"gi|384081575|ref|NR_047562.1| Homo sapiens PDZ and LIM domain 3 (PDLIM3), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384081575|ref|NR_047562.1| Homo sapiens PDZ and LIM domain 3 (PDLIM3), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NR_047562.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010714	0.87320954	A	0.87381077	A	0.999583345945051	0	lncRNA	ENST00000444238	NA	NA	NA	NA	XLOC_l2_000353	NA	ENST00000444238	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000353), lincRNA [TCONS_l2_00002128]"	chr1:110960969-110961028	hs|1p13.3	Agilent_HUMAN_G3V2	ENST00000444238	ENST00000444238	chr1	110960969	110961028	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003051	0.8732153	A	0.87367773	A	0.999679519314203	0	lncRNA	TCONS_00006290	NA	NA	NA	NA	XLOC_002897	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002897), lincRNA [TCONS_00006290]"	chr3:158602098-158602157	hs|3q25.32	Agilent_HUMAN_G3V2	TCONS_00006290	TCONS_00006290	chr3	158602098	158602157	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005544	3.7676306	P	4.2313757	P	0.725101518390791	0	lncRNA	TCONS_00014011	NA	NA	NA	NA	XLOC_006658	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006658), lincRNA [TCONS_00014011]"	chr7:153220412-153220353	hs|7q36.2	Agilent_HUMAN_G3V2	TCONS_00014011	TCONS_00014011	chr7	153220353	153220412	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37084_PI429285431	3.3136077	P	3.4895668	P	0.885178858796354	0	lncRNA	38211-1_{1..1332}	n345528|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1077|NULL|-1.5314100|-0.3439350	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345528|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1077|NULL|-1.5314100|-0.3439350	chr2	 62376623	 62377954	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7699_PI429285431	0.8746533	A	0.98600787	A	0.925718481480438	0	lncRNA	9332-1_{1..1648}	lnc-TMEM86A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TMEM86A-2:1	chr11	 18630785	 18632432	+	lnc-TMEM86A-2	lnc-TMEM86A-2:1	ENSG00000247595	ENST00000501599	SPTY2D1	"hg19_refFlat_SPTY2D1:range=chr11:18631408-186558045'pad=0,hg19_refFlat_SPTY2D1:range=chr11:18631408-186558045'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr11:18627948-18641802"	NA	inner
CUST_23393_PI429285431	5.6130333	P	5.6030493	P	1.00694438262424	0	lncRNA	24961-1_{1..394}	lnc-ATXN7-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATXN7-3:3	chr3	 64086483	 64086876	+	lnc-ATXN7-3	lnc-ATXN7-3:3	ENSG00000241572.1	PRICKLE2-AS1	PRICKLE2	"hg19_refFlat_PRICKLE2:range=chr3:64084727-641846035'pad=0,hg19_refFlat_PRICKLE2:range=chr3:64084727-641846035'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80chr3:64079526-64096790"	NA	inner
CUST_21142_PI429285431	2.6022959	A	2.9828832	A	0.768124834630322	0	lncRNA	22767-1_{1..580}	lnc-HRASLS-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HRASLS-3:1	chr3	192234270	192234849	+	lnc-HRASLS-3	lnc-HRASLS-3:1	ENSG00000230126.1	FGF12-AS2	FGF12	NA	chr3:192224270-192244362	inner
CUST_13111_PI429285431	0.95959234	A	2.2546973	A	0.407506517911944	0	lncRNA	14735-1_{1..421}	lnc-STAG1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STAG1-3:1	chr3	137039505	137039925	-	lnc-STAG1-3	lnc-STAG1-3:1	XLOC_003266	linc-STAG1	NA	NA	NA	inter
CUST_23951_PI429285431	1.571271	A	0.87608004	A	1.61909872830138	0	lncRNA	25507-1_{1..555}	lnc-NDUFV1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFV1-1:1	chr11	 67373831	 67374385	+	lnc-NDUFV1-1	lnc-NDUFV1-1:1	ENSG00000255119.1	RP11-655M14.12	NDUFV1	NA	chr11:67374323-67380012	inter
CUST_37629_PI429285431	1.3653462	A	2.030888	A	0.630451895544151	0	lncRNA	38725-2_{3001..3073}	n346107|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1657|NULL|-1.3084500|-0.2458811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346107|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1657|NULL|-1.3084500|-0.2458811	chr22	 42668996	 42669068	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31274_PI429285431	1.1310377	A	1.2241029	A	0.937528725580067	0	lncRNA	33062-1_{1..796}	n337732|U00945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|114|NULL|-1.1063900|-0.3106947	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337732|U00945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|114|NULL|-1.1063900|-0.3106947	chrX	 64914522	 64915317	+	NA	NA	NA	NA	MSN	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10chrX:64904522-64925344"	NA	inner
CUST_45203_PI429285431	8.474668	P	8.315869	P	1.11635741734812	0	lncRNA	49667-1_{1..3000}	"gi|336455052|ref|NR_038875.1| Homo sapiens uncharacterized LOC286184 (LOC286184), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|336455052|ref|NR_038875.1| Homo sapiens uncharacterized LOC286184 (LOC286184), non-coding RNA"	Chr8	 64681988	 64684987	+	286184	NR_038875.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00"	NA	inter
CUST_31702_PI429285431	1.1321393	A	0.88657737	A	1.18555445471428	0	lncRNA	33446-1_{1..2930}	n338232|M60502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|624|NULL|2.9461000|-0.1111367	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338232|M60502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|624|NULL|2.9461000|-0.1111367	chr1	152274639	152277568	-	NA	NA	NA	NA	FLG	NA	chr1:152274651-152291460	inner
CUST_37404_PI429285431	4.101635	P	4.3258743	P	0.856046280270152	0	lncRNA	38510-1_{1..1127}	n345858|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1407|NULL|-1.5733600|-0.3053198	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345858|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1407|NULL|-1.5733600|-0.3053198	chr7	 21333130	 21334256	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46324_PI429285431	3.6995554	P	3.0353394	P	1.5847068660702	0	lncRNA	50553-1_{1..2498}	"gi|262072982|ref|NR_029434.1| Homo sapiens uncharacterized LOC379025 (FLJ31306), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|262072982|ref|NR_029434.1| Homo sapiens uncharacterized LOC379025 (FLJ31306), transcript variant 1, non-coding RNA"	Chr14	 58732083	 58734580	-	379025	NR_029434.1	NA	NA	NA	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
CUST_13333_PI429285431	1.1145358	A	0.89038986	A	1.16808554971754	0	lncRNA	14969-1_{1..388}	lnc-KIAA0930-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA0930-1:1	chr22	 45664599	 45664986	-	lnc-KIAA0930-1	lnc-KIAA0930-1:1	XLOC_014395	linc-C22orf9	UPK3A	NA	chr22:45671408-45674778	inter
CUST_38394_PI429285431	5.308801	P	5.0460205	P	1.19978882564788	0	lncRNA	39432-1_{1..3000}	n382317|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yvq.2||4.4663400|-0.2332226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382317|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yvq.2||4.4663400|-0.2332226	chr15	 23282264	 23285263	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60"	NA	inter
CUST_48209_PI429285431	1.4178312	A	2.159007	A	0.598251577063497	0	lncRNA	52072-1_{1..619}	hg19_lincRNAsTranscripts_TCONS_l2_00001148 range=chr1:37611133-37618282 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001148 range=chr1:37611133-37618282 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 37611133	 37611751	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1055_PI429285431	0.89162856	A	1.3473973	A	0.729121556197625	0	lncRNA	1045-1_{1..650}	"transcript_id ""ENST00000422238.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422238.1"" | genecode_v17"	chr2	122548036	122548685	+	ENSG00000224655.1	ENST00000422238.1	AC018737.3	AC018737.3-001	NA	NA	NA	inter
CUST_40023_PI429285431	6.921521	P	5.846058	P	2.10739828471039	0	lncRNA	40881-1_{1..1946}	n407184|NR_026645|lncRNA|Homosapiens||RefGeneNoncode|NR_026645||7.4613400|-0.2380823	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407184|NR_026645|lncRNA|Homosapiens||RefGeneNoncode|NR_026645||7.4613400|-0.2380823	chr15	 89055713	 89057658	-	NA	NA	NA	NA	DET1	NA	chr15:89055714-89089912	inner
CUST_38969_PI429285431	6.4972587	P	6.246628	P	1.18972711186639	0	lncRNA	39953-1_{1..2244}	n385189|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ttt.1||3.8996500|-0.3850559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385189|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ttt.1||3.8996500|-0.3850559	chr7	 64498731	 64500974	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36232_PI429285431	0.90147644	A	0.8908607	A	1.00738540884463	0	lncRNA	37481-2_{3001..4754}	n344772|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_321|NULL|-1.4877100|-0.3217440	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344772|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_321|NULL|-1.4877100|-0.3217440	chr9	 22015153	 22016906	+	NA	NA	NA	NA	CDKN2B	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80chr9:22002902-22009312"	NA	inter
CUST_42942_PI429285431	7.9242606	P	8.343713	P	0.747708376183956	0	lncRNA	46062-1_{1..187}	ENST00000516956 ncrna:snoRNA chromosome:GRCh37:1:101598709:101598895:1 gene:ENSG00000252765 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516956 ncrna:snoRNA chromosome:GRCh37:1:101598709:101598895:1 gene:ENSG00000252765 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	101598709	101598895	+	ENSG00000252765	ENST00000516956	NA	NA	NA	NA	NA	inter
CUST_4386_PI429285431	1.8070796	A	2.5327716	A	0.604706922613818	0	lncRNA	4337-1_{1..369}	"transcript_id ""ENST00000551656.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551656.1"" | genecode_v17"	chr12	 95781666	 95782034	-	ENSG00000258313.1	ENST00000551656.1	RP11-167N24.5	RP11-167N24.5-001	NA	NA	NA	inter
CUST_34068_PI429285431	0.88260484	A	0.87784296	A	1.00330613695077	0	lncRNA	35597-1_{1..613}	n340891|Z83951|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3356|NULL|-1.2999800|-0.3995960	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340891|Z83951|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3356|NULL|-1.2999800|-0.3995960	chr6	 25454464	 25455076	-	NA	NA	NA	NA	LRRC16A	NA	chr6:25444464-25465074	inner
CUST_37412_PI429285431	1.1461182	A	1.8808988	A	0.6009094020086	0	lncRNA	38518-1_{1..231}	n345867|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1416|NULL|-1.3581700|-0.2291491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345867|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1416|NULL|-1.3581700|-0.2291491	chr18	 26736804	 26737034	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32102_PI429285431	0.8994346	A	0.9058554	A	0.995559329646561	0	lncRNA	33806-1_{1..1912}	n338665|AK056182|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1079|NULL|0.1998920|-0.2680596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338665|AK056182|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1079|NULL|0.1998920|-0.2680596	chr13	 41707074	 41708985	+	NA	NA	NA	NA	MTRF1	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50chr13:41790516-41820822"	NA	inner
CUST_21347_PI429285431	0.91121423	A	0.9118713	A	0.999544657481954	0	lncRNA	22971-1_{1..586}	lnc-SLC6A12-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC6A12-4:1	chr12	   220785	   221370	-	lnc-SLC6A12-4	lnc-SLC6A12-4:1	ENSG00000256948.1	RP11-598F7.3	IQSEC3	NA	chr12:210785-231016	inner
CUST_31656_PI429285431	1.0936892	A	0.99628556	A	1.06984636969641	0	lncRNA	33407-1_{1..1261}	n338178|CR610673|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|568|NULL|0.2628060|-0.3701439	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338178|CR610673|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|568|NULL|0.2628060|-0.3701439	chr1	113041687	113042947	+	NA	NA	NA	NA	WNT2B	"hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-17.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50chr1:113031687-113052948"	NA	inner
CUST_9845_PI429285431	1.5476341	A	1.3594079	A	1.13936200366412	0	lncRNA	11365-1_{1..742}	lnc-RP11-511B23.3.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-511B23.3.1-2:1	chr12	 93486215	 93486956	+	lnc-RP11-511B23.3.1-2	lnc-RP11-511B23.3.1-2:1	XLOC_009838	linc-NUDT4-3	NA	NA	NA	inter
CUST_3674_PI429285431	0.89542556	A	0.90501684	A	0.993373881492001	0	lncRNA	3642-1_{1..1974}	"transcript_id ""ENST00000431737.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000431737.1"" | genecode_v17"	chr10	 44354859	 44356832	+	ENSG00000226808.1	ENST00000431737.1	LINC00840	LINC00840-001	NA	NA	NA	inter
CUST_48375_PI429285431	0.89530164	A	0.91123974	A	0.989013349889952	0	lncRNA	52228-1_{1..1560}	hg19_lincRNAsTranscripts_TCONS_l2_00001394 range=chr1:95187175-95209119 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001394 range=chr1:95187175-95209119 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 95187175	 95188734	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8391_PI429285431	3.510571	P	2.3062403	A	2.3043034252896	0	lncRNA	9969-1_{1..575}	lnc-SERPINC1-1:28	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:28	chr1	173833813	173834387	-	lnc-SERPINC1-1	lnc-SERPINC1-1:28	ENSG00000234741	GAS5	DARS2	NA	chr1:173823813-173827682	inter
LNCA_21_P0012373	0.9025881	A	0.92336786	A	0.985699801139019	0	lncRNA	ENST00000450746	NA	NA	NA	NA	XLOC_l2_009658	NA	ENST00000450746	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009658), lincRNA [TCONS_l2_00018490]"	chr3:30568579-30568638	hs|3p24.1	Agilent_HUMAN_G3V2	ENST00000450746	ENST00000450746	chr3	 30568579	 30568638	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008107	2.031874	A	0.9191062	A	2.16260143090335	0	lncRNA	TCONS_00021876	NA	NA	NA	NA	XLOC_010475	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010475), lincRNA [TCONS_00021876]"	chr13:97799675-97799734	hs|13q32.1	Agilent_HUMAN_G3V2	TCONS_00021876	TCONS_00021876	chr13	 97799675	 97799734	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28792_PI429285431	2.026437	A	1.9425386	A	1.05987814017205	0	lncRNA	30500-1_{1..534}	n326199|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092058|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092058|0.5367950|-0.4150069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326199|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092058|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092058|0.5367950|-0.4150069	chr1	223965292	223965825	-	NA	NA	NA	NA	TP53BP2	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10chr1:223967595-224000599"	NA	inner
CUST_28626_PI429285431	0.92378986	A	0.92765325	A	0.997325684484186	0	lncRNA	30311-1_{1..408}	n325995|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047729|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047729|-0.4265640|-0.1274829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325995|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047729|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047729|-0.4265640|-0.1274829	chr10	 43593015	 43593422	-	NA	NA	NA	NA	RET	NA	chr10:43583015-43604279	inner
CUST_41190_PI429285431	0.9006349	A	0.9130552	A	0.991427856222065	0	lncRNA	42047-1_{1..72}	ENST00000584846 ncrna:miRNA chromosome:GRCh37:19:49812054:49812125:-1 gene:ENSG00000265407 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584846 ncrna:miRNA chromosome:GRCh37:19:49812054:49812125:-1 gene:ENSG00000265407 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 49812054	 49812125	-	ENSG00000265407	ENST00000584846	NA	NA	SLC6A16	NA	chr19:49802054-49822125	inner
CUST_48687_PI429285431	3.1275303	P	3.1276195	A	0.99993817318285	0	lncRNA	52528-1_{1..1216}	hg19_lincRNAsTranscripts_TCONS_l2_00013871 range=chr2:105470369-105471665 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013871 range=chr2:105470369-105471665 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	105470369	105471584	+	NA	NA	NA	NA	POU3F3	NA	chr2:105471969-105473471	inter
LNCA_21_P0007729	0.88671106	A	0.90135115	A	0.989903577455304	0	lncRNA	TCONS_00020851	NA	NA	NA	NA	XLOC_010137	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010137), lincRNA [TCONS_00020851]"	chr12:78820342-78817039	hs|12q21.2	Agilent_HUMAN_G3V2	TCONS_00020851	TCONS_00020851	chr12	 78817039	 78820342	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47827_PI429285431	8.649945	P	7.9315143	P	1.6453912767376	0	lncRNA	51739-2_{3001..6000}	"gi|410170958|ref|XR_171122.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410170958|ref|XR_171122.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family member (LOC100288142), misc_RNA"	NA	NA	NA	NA	NA	XR_171122.1	NA	NA	NA	NA	NA	Unknown
CUST_26935_PI429285431	0.89764977	A	0.9137131	A	0.988927504466625	0	lncRNA	28454-1_{1..419}	n324013|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053396|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053396|-1.1209400|-0.3295474	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324013|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053396|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053396|-1.1209400|-0.3295474	chr9	101333798	101334216	+	NA	NA	NA	NA	GABBR2	NA	chr9:101323798-101349027	inner
CUST_20197_PI429285431	4.075485	P	3.5227363	P	1.46687780956709	0	lncRNA	21840-1_{1..781}	lnc-C10orf68-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf68-2:1	chr10	 33502166	 33502946	+	lnc-C10orf68-2	lnc-C10orf68-2:1	ENSG00000238258.1	RP11-342D11.2	NRP1	"hg19_refFlat_NRP1:range=chr10:33486567-336233105'pad=0,hg19_refFlat_NRP1:range=chr10:33486567-336233105'pad=0 3'pad=0 strand=- repeatMasking=none,-94.10;hg19_refFlat_NRP1:range=chr10:33469004-336233105'pad=0,hg19_refFlat_NRP1:range=chr10:33469004-336233105'pad=0 3'pad=0 strand=- repeatMasking=none,-94.10chr10:33492166-33512732"	NA	inner
CUST_22721_PI429285431	0.9027014	A	0.90802044	A	0.996319910608888	0	lncRNA	24305-1_{1..449}	lnc-AHI1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AHI1-1:1	chr6	135517031	135517479	-	lnc-AHI1-1	lnc-AHI1-1:1	ENSG00000236703.1	MYB-AS1	MYB	"hg19_refFlat_MYB:range=chr6:135502652-1355391185'pad=0,hg19_refFlat_MYB:range=chr6:135502652-1355391185'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30chr6:135507031-135527133"	NA	inner
LNCA_21_P0001518	6.640663	P	6.5488095	P	1.06573850902436	0	lncRNA	TCONS_00001523	NA	NA	NA	NA	XLOC_000868	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000868), lincRNA [TCONS_00001523]"	chr1:71110725-71110666	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_00001523	TCONS_00001523	chr1	 71110666	 71110725	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25243_PI429285431	0.8953937	A	0.89225686	A	1.0021766572884	0	lncRNA	26773-1_{1..700}	lnc-C10orf116-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf116-1:1	chr10	 88743611	 88744310	+	lnc-C10orf116-1	lnc-C10orf116-1:1	ENSG00000151303.10	AGAP11	AGAP11	NA	chr10:88733611-88753691	inner
CUST_5484_PI429285431	1.8263041	A	1.8443103	A	0.987596617227426	0	lncRNA	5417-2_{3001..4818}	"transcript_id ""ENST00000604430.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604430.1"" | genecode_v17"	chr16	 29305541	 29307358	+	ENSG00000198106.7	ENST00000604430.1	SNX29P2	SNX29P2-001	LOC728888	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr16:29392710-29393431"	NA	inter
CUST_15421_PI429285431	0.90030587	A	0.91011244	A	0.993225653695754	0	lncRNA	17107-1_{1..357}	lnc-MYOCD-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYOCD-2:7	chr17	 12493758	 12494114	+	lnc-MYOCD-2	lnc-MYOCD-2:7	XLOC_012113	linc-MYOCD	NA	NA	NA	inter
CUST_38760_PI429285431	1.0752608	A	0.8826442	A	1.14283458375925	0	lncRNA	39752-1_{1..1552}	n384341|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003eye.1||0.0933916|-0.3653085	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384341|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003eye.1||0.0933916|-0.3653085	chr3	150283626	150285177	-	NA	NA	NA	NA	SELT	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-23.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80chr3:150321066-150331015"	NA	inner
LNCA_21_P0006022	3.3612318	P	3.5837646	P	0.857059458564805	0	lncRNA	ENST00000436084	NA	NA	NA	NA	XLOC_007421	NA	ENST00000436084	THC2742550	NA	"BROAD Institute lincRNA (XLOC_007421), lincRNA [TCONS_00015700]"	chr9:85020991-85021050	hs|9q21.32	Agilent_HUMAN_G3V2	ENST00000436084	ENST00000436084	chr9	 85020991	 85021050	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17079_PI429285431	0.92068803	A	1.1396887	A	0.859160355945625	0	lncRNA	18788-1_{1..482}	lnc-CPEB2-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPEB2-8:1	chr4	 13491345	 13491826	+	lnc-CPEB2-8	lnc-CPEB2-8:1	XLOC_003460	linc-CPEB2-7	RAB28	NA	chr4:13481345-13485989	inter
CUST_48893_PI429285431	16.275146	P	16.283142	P	0.994472925933809	0	lncRNA	52732-1_{1..575}	hg19_lincRNAsTranscripts_TCONS_l2_00018699 range=chr3:94872569-94891258 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018699 range=chr3:94872569-94891258 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	 94872569	 94873143	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002416	5.560162	P	5.5550547	P	1.00354638418767	0	lncRNA	TCONS_00004186	NA	NA	NA	NA	XLOC_002030	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002030), lincRNA [TCONS_00004186]"	chr2:27958295-27958094	hs|2p23.2	Agilent_HUMAN_G3V2	TCONS_00004186	TCONS_00004186	chr2	 27958094	 27958295	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49_PI429201921	1.9652054	A	1.4303594	A	1.44878749596346	0	lncRNA	50-1_{1..1525}	TC22001192.hg.1	TCONS_l2_00018300-XLOC_l2_009445 // Broad TUCP // linc-OR11H1-3 chr22:-:17061966-17063492 // chr22 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr22:-:17061966-17063492	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00018300-XLOC_l2_009445	linc-OR11H1-3	chr22	 17061966	 17063492	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42527_PI429285431	8.211555	P	8.289089	P	0.947676126798007	0	lncRNA	45320-1_{1..135}	ENST00000384370 ncrna:snoRNA chromosome:GRCh37:21:34214171:34214305:-1 gene:ENSG00000207098 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384370 ncrna:snoRNA chromosome:GRCh37:21:34214171:34214305:-1 gene:ENSG00000207098 gene_biotype:snoRNA transcript_biotype:snoRNA	chr21	 34214171	 34214305	-	ENSG00000207098	ENST00000384370	NA	NA	NA	NA	NA	inter
CUST_44936_PI429285431	5.997805	P	6.4735174	P	0.719111606408137	0	lncRNA	49448-1_{1..1725}	"gi|393010994|ref|NR_015401.2| Homo sapiens uncharacterized LOC255031 (FLJ35390), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|393010994|ref|NR_015401.2| Homo sapiens uncharacterized LOC255031 (FLJ35390), transcript variant 2, non-coding RNA"	Chr7	 44078648	 44080372	+	255031	NR_015401.2	NA	NA	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90;hg19_refFlat_RASA4:range=chr7:102223218-1022571365'pad=0,hg19_refFlat_RASA4:range=chr7:102223218-1022571365'pad=0 3'pad=0 strand=- repeatMasking=none,-105.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30"	NA	inter
CUST_198_PI429285431	1.4261816	A	2.4534056	A	0.490653344736204	0	lncRNA	188-1_{1..551}	"transcript_id ""ENST00000441046.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441046.1"" | genecode_v17"	chr1	 30613110	 30613660	+	ENSG00000233372.1	ENST00000441046.1	RP5-893G23.1	RP5-893G23.1-001	NA	NA	NA	inter
CUST_50169_PI429285431	7.255964	P	6.829295	P	1.34412657350593	0	lncRNA	53895-1_{1..516}	hg19_lincRNAsTranscripts_TCONS_l2_00029905 range=chr9:19461158-19464522 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029905 range=chr9:19461158-19464522 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 19461158	 19461673	-	NA	NA	NA	NA	ACER2	NA	chr9:19451158-19452500	inter
CUST_6378_PI429285431	0.98721296	A	1.196209	A	0.865139065269797	0	lncRNA	6304-1_{1..1023}	"transcript_id ""ENST00000590092.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590092.1"" | genecode_v17"	chr19	 19868592	 19869614	-	ENSG00000266904.1	ENST00000590092.1	LINC00663	LINC00663-007	NA	NA	NA	inter
CUST_261_PI429201921	0.88243353	A	0.88534945	A	0.997980879445213	0	lncRNA	192-2_{3001..6000}	TC01005702.hg.1	TCONS_l2_00002597-XLOC_l2_001050 // Broad TUCP // linc-DENND2D chr1:-:111927140-111932473 // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00002598-XLOC_l2_001050 // Broad TUCP // linc-DENND2D chr1:-:111930958-111933696 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:111927140-111932473	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00002597-XLOC_l2_001050	linc-DENND2D	chr1	111927140	111932473	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38989_PI429285431	7.244005	P	6.3777637	P	1.82290742873886	0	lncRNA	39970-2_{3001..3218}	n385229|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003uhq.1||-1.1787300|-0.4902735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385229|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003uhq.1||-1.1787300|-0.4902735	chr7	 81578759	 81578976	-	NA	NA	NA	NA	CACNA2D1	NA	chr7:81579418-81588977	inter
LNCA_21_P0008478	8.935862	P	8.875324	P	1.04285458256018	0	lncRNA	TCONS_00022841	NA	NA	NA	NA	XLOC_011107	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011107), lincRNA [TCONS_00022841]"	chr14:95024849-95024790	hs|14q32.13	Agilent_HUMAN_G3V2	TCONS_00022841	TCONS_00022841	chr14	 95024790	 95024849	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13650_PI429285431	3.6463852	P	4.4246254	P	0.583077597918211	0	lncRNA	15288-1_{1..482}	lnc-C5orf63-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf63-1:2	chr5	126565407	126565888	-	lnc-C5orf63-1	lnc-C5orf63-1:2	XLOC_004988	linc-FLJ44606-2	NA	NA	NA	inter
LNCA_21_P0014072	4.4566526	P	4.8448706	P	0.764072795610012	0	lncRNA	XR_108348	XR_108348	XR_108348	NA	NA	LOC100507670	uncharacterized LOC100507670	ENST00000447795	THC2667614	NA	"PREDICTED: Homo sapiens hypothetical LOC100507670 (LOC100507670), miscRNA [XR_108348]"	chr1:151254050-151252707	hs|1q21.3	Agilent_HUMAN_G3V2	XR_108348	XR_108348	chr1	151252707	151254050	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21623_PI429285431	1.0822588	A	1.5053295	A	0.745835462406163	0	lncRNA	23235-1_{1..1889}	lnc-CSTB-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CSTB-1:7	chr21	 45230112	 45232000	-	lnc-CSTB-1	lnc-CSTB-1:7	ENSG00000215458.4	AP001053.11	RRP1	NA	chr21:45220112-45223983	inter
CUST_2084_PI429285431	1.2885791	A	1.2433947	A	1.03181505369715	0	lncRNA	2075-1_{1..415}	"transcript_id ""ENST00000510562.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510562.1"" | genecode_v17"	chr5	 10493403	 10493817	-	ENSG00000249166.1	ENST00000510562.1	RP11-1C1.6	RP11-1C1.6-001	NA	NA	NA	inter
LNCA_19_P00317731	3.218112	P	2.8995867	P	1.24705517714754	0	lncRNA	ENST00000432413	NA	NA	NA	NA	XLOC_002473	NA	ENST00000432413	NA	NA	"BROAD Institute lincRNA (XLOC_002473), lincRNA [TCONS_00003489]"	chr2:208104860-208104801	hs|2q33.3	Agilent_HUMAN_G3V2	ENST00000432413	ENST00000432413	chr2	208104801	208104860	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17001_PI429285431	12.829642	P	12.968642	P	0.90814841772151	0	lncRNA	18711-1_{1..313}	lnc-ZKSCAN1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZKSCAN1-1:5	chr7	 99608999	 99609311	+	lnc-ZKSCAN1-1	lnc-ZKSCAN1-1:5	XLOC_006188	linc-ZKSCAN1-1	ZKSCAN1	NA	chr7:99613219-99619247	inter
LNCA_21_P0003702	0.9052333	A	0.9277721	A	0.984498695764555	0	lncRNA	TCONS_00008383	NA	NA	NA	NA	XLOC_003836	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003836), lincRNA [TCONS_00008383]"	chr4:189705138-189706043	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008383	TCONS_00008383	chr4	189705138	189706043	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18037_PI429285431	3.7006223	P	3.7373524	P	0.974861991427704	0	lncRNA	19772-1_{1..360}	lnc-ITGA4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITGA4-2:1	chr2	181940923	181941282	+	lnc-ITGA4-2	lnc-ITGA4-2:1	XLOC_001775	linc-ITGA4-2	NA	NA	NA	inter
CUST_9547_PI429285431	0.9111982	A	0.9070471	A	1.00288146672888	0	lncRNA	11060-1_{1..1326}	lnc-CTB-78H18.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTB-78H18.1.1-1:2	chr5	171171229	171172554	+	lnc-CTB-78H18.1.1-1	lnc-CTB-78H18.1.1-1:2	XLOC_004629	linc-EFCAB9-2	C5orf50	NA	chr5:171161229-171182081	inter
CUST_20981_PI429285431	2.0412638	A	1.8656191	A	1.12946902011413	0	lncRNA	22610-1_{1..437}	lnc-USP35-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP35-3:1	chr11	 78154694	 78155130	+	lnc-USP35-3	lnc-USP35-3:1	ENSG00000254420.1	RP11-452H21.1	NARS2	"hg19_refFlat_NARS2:range=chr11:78147716-782855335'pad=0,hg19_refFlat_NARS2:range=chr11:78147716-782855335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_NARS2:range=chr11:78147716-782398955'pad=0,hg19_refFlat_NARS2:range=chr11:78147716-782398955'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40chr11:78147016-78165095"	NA	inner
LNCA_21_P0010360	0.9094461	A	0.9364873	A	0.981431036075668	0	lncRNA	ENST00000450216	NA	NA	NA	NA	XLOC_014243	NA	ENST00000450216	NA	NA	"BROAD Institute lincRNA (XLOC_014243), lincRNA [TCONS_00029424]"	chr22:39320638-39320697	hs|22q13.1	Agilent_HUMAN_G3V2	ENST00000450216	ENST00000450216	chr22	 39320638	 39320697	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011505	0.9071124	A	0.92927426	A	0.984755954167227	0	lncRNA	BX537874	NA	BX537874	NA	Hs.451336	LOC643802	u3 small nucleolar ribonucleoprotein protein MPP10-like	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005490), lincRNA [TCONS_l2_00010465]"	chr16:53401186-53401127	hs|16q12.2	Agilent_HUMAN_G3V2	BX537874	BX537874	chr16	 53401127	 53401186	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22087_PI429285431	3.0604897	A	3.3503926	P	0.817957108974053	0	lncRNA	23692-1_{1..386}	lnc-DAD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DAD1-1:1	chr14	 23025845	 23026230	-	lnc-DAD1-1	lnc-DAD1-1:1	ENSG00000259054.1	AE000662.93	DAD1	NA	chr14:23033807-23035956	inter
CUST_22964_PI429285431	1.065582	A	0.92282796	A	1.10401061223405	0	lncRNA	24538-1_{1..582}	lnc-LIPG-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-LIPG-2:1	chr18	 47018146	 47018727	+	lnc-LIPG-2	lnc-LIPG-2:1	ENSG00000265496.1	hsa-mir-1539	RPL17-C18ORF32	NA	chr18:47008146-47018935	inner
LNCA_21_P0006810	2.404627	A	0.9245998	A	2.7895399250842	0	lncRNA	TCONS_00018083	NA	NA	NA	NA	XLOC_008342	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008342), lincRNA [TCONS_00018083]"	chr10:2609461-2609520	hs|10p15.3	Agilent_HUMAN_G3V2	TCONS_00018083	TCONS_00018083	chr10	  2609461	  2609520	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007894	5.987621	P	5.3738	P	1.53030688774833	0	lncRNA	ENST00000321694	NA	NA	NA	NA	VSIG10	V-set and immunoglobulin domain containing 10	ENST00000321694	NA	GO:0016020|GO:0016021	"BROAD Institute lincRNA (XLOC_010212), lincRNA [TCONS_00021412]"	chr12:118558896-118558838	hs|12q24.23	Agilent_HUMAN_G3V2	ENST00000321694	ENST00000321694	chr12	118558838	118558896	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8191_PI429285431	1.5040863	A	1.4143355	A	1.06418634724535	0	lncRNA	9790-1_{1..3000}	lnc-HES5-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HES5-1:4	chr1	  2482431	  2485430	-	lnc-HES5-1	lnc-HES5-1:4	ENSG00000238164	RP3-395M20.8	TNFRSF14	NA	chr1:2487805-2495268	inter
LNCA_21_P0008126	0.8980884	A	0.9169539	A	0.98700855872253	0	lncRNA	TCONS_00021922	NA	NA	NA	NA	XLOC_010517	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010517), lincRNA [TCONS_00021922]"	chr13:114944255-114944314	hs|13q34	Agilent_HUMAN_G3V2	TCONS_00021922	TCONS_00021922	chr13	114944255	114944314	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22230_PI429285431	0.9073361	A	0.923045	A	0.989170486263698	0	lncRNA	23830-1_{1..642}	lnc-TMEM234-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM234-1:2	chr1	 32671716	 32672357	-	lnc-TMEM234-1	lnc-TMEM234-1:2	ENSG00000224066.1	RP4-622L5.7	CCDC28B	"hg19_refFlat_CCDC28B:range=chr1:32667537-326708495'pad=0,hg19_refFlat_CCDC28B:range=chr1:32667537-326708495'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.80chr1:32666202-32670991"	NA	inner
LNCA_21_P0001135	0.8955328	A	0.9134094	A	0.987685338867857	0	lncRNA	ENST00000451090	NA	NA	NA	NA	XLOC_000849	NA	ENST00000451090	NA	NA	"BROAD Institute lincRNA (XLOC_000849), lincRNA [TCONS_00000527]"	chr1:59521731-59521672	hs|1p32.1	Agilent_HUMAN_G3V2	ENST00000451090	ENST00000451090	chr1	 59521672	 59521731	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7151_PI429285431	0.90649927	A	0.92453486	A	0.987576498513414	0	lncRNA	7088-1_{1..2939}	"transcript_id ""ENST00000419158.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419158.1"" | genecode_v17"	chrY	 24247839	 24250777	-	ENSG00000236951.1	ENST00000419158.1	AC007359.6	AC007359.6-001	PRY2	NA	chrY:24237839-24242154	inter
LNCA_21_P0010531	2.255755	A	0.91163784	A	2.5387479331633	0	lncRNA	ENST00000438195	NA	NA	NA	NA	XLOC_l2_000233	NA	ENST00000438195	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000233), lincRNA [TCONS_l2_00000308]"	chr1:59487248-59507901	hs|1p32.1	Agilent_HUMAN_G3V2	ENST00000438195	ENST00000438195	chr1	 59487248	 59507901	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46924_PI429285431	3.1139402	P	2.6551137	A	1.37442339605141	0	lncRNA	51038-1_{1..3000}	"gi|254939594|ref|NR_003587.2| Homo sapiens myosin XVB pseudogene (MYO15B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254939594|ref|NR_003587.2| Homo sapiens myosin XVB pseudogene (MYO15B), non-coding RNA"	NA	NA	NA	NA	NA	NR_003587.2	NA	NA	NA	NA	NA	Unknown
CUST_37794_PI429285431	1.1651754	A	0.9064096	A	1.19645472090447	0	lncRNA	38886-1_{1..1248}	n346300|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1850|NULL|-1.3189800|-0.1768188	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346300|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1850|NULL|-1.3189800|-0.1768188	chr2	 11497349	 11498596	-	NA	NA	NA	NA	LOC650157	NA	chr2:11491753-11512199	inter
CUST_48507_PI429285431	5.1775427	P	5.5306005	P	0.782922928676762	0	lncRNA	52360-1_{1..1922}	hg19_lincRNAsTranscripts_TCONS_l2_00014780 range=chr2:111144033-111149316 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014780 range=chr2:111144033-111149316 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	111144033	111145954	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39651_PI429285431	3.8594182	P	3.864959	P	0.99616677573486	0	lncRNA	40590-1_{1..349}	n405228|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000322487||-1.1632700|-0.1750640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405228|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000322487||-1.1632700|-0.1750640	chr7	    84839	    85187	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42128_PI429285431	0.90627784	A	0.9207071	A	0.990048248792958	0	lncRNA	44127-1_{1..102}	ENST00000583252 ncrna:miRNA chromosome:GRCh37:13:40238171:40238272:-1 gene:ENSG00000264171 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583252 ncrna:miRNA chromosome:GRCh37:13:40238171:40238272:-1 gene:ENSG00000264171 gene_biotype:miRNA transcript_biotype:miRNA	chr13	 40238171	 40238272	-	ENSG00000264171	ENST00000583252	NA	NA	COG6	NA	chr13:40229764-40248272	inner
LNCA_21_P0006553	1.7674024	A	2.400951	A	0.644588966968116	0	lncRNA	TCONS_00017386	NA	NA	NA	NA	XLOC_008256	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008256), lincRNA [TCONS_00017386]"	chrX:150564383-150561134	hs|Xq28	Agilent_HUMAN_G3V2	TCONS_00017386	TCONS_00017386	chrX	150561134	150564383	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24204_PI429285431	1.5505869	A	2.304727	A	0.592899670470196	0	lncRNA	25755-1_{1..410}	lnc-SLC26A7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC26A7-1:1	chr8	 92989380	 92989789	+	lnc-SLC26A7-1	lnc-SLC26A7-1:1	ENSG00000253576.1	GS1-5L10.1	RUNX1T1	"hg19_refFlat_RUNX1T1:range=chr8:92972470-931076955'pad=0,hg19_refFlat_RUNX1T1:range=chr8:92972470-931076955'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_RUNX1T1:range=chr8:92972470-931151125'pad=0,hg19_refFlat_RUNX1T1:range=chr8:92972470-931151125'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_RUNX1T1:range=chr8:92972470-930295685'pad=0,hg19_refFlat_RUNX1T1:range=chr8:92972470-930295685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_RUNX1T1:range=chr8:92972470-930747805'pad=0,hg19_refFlat_RUNX1T1:range=chr8:92972470-930747805'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_RUNX1T1:range=chr8:92972470-930882805'pad=0,hg19_refFlat_RUNX1T1:range=chr8:92972470-930882805'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90chr8:92979380-92999646"	NA	inner
CUST_33248_PI429285431	2.2600234	A	2.946824	A	0.621229997360757	0	lncRNA	34835-1_{1..2178}	n339952|BC034402|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2402|NULL|9.7729900|-0.1347462	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339952|BC034402|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2402|NULL|9.7729900|-0.1347462	chr4	 40434719	 40436896	-	NA	NA	NA	NA	RBM47	NA	chr4:40425272-40631883	inner
CUST_26924_PI429285431	1.6290978	A	2.1904879	A	0.67764890458701	0	lncRNA	28442-1_{1..2055}	n324000|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053529|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053529|-0.0021568|-0.3494622	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324000|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053529|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053529|-0.0021568|-0.3494622	chr9	108418159	108420213	+	NA	NA	NA	NA	TMEM38B	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10chr9:108456825-108491900"	NA	inner
CUST_6965_PI429285431	0.90271723	A	1.2127652	A	0.806614938611535	0	lncRNA	6913-1_{1..578}	"transcript_id ""ENST00000454387.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454387.1"" | genecode_v17"	chr22	 27703444	 27704021	-	ENSG00000223726.1	ENST00000454387.1	CTA-929C8.7	CTA-929C8.7-001	NA	NA	NA	inter
LNCA_21_P0006699	0.87991124	A	0.89003587	A	0.993006708927528	0	lncRNA	ENST00000450054	NA	NA	NA	NA	XLOC_008601	NA	ENST00000450054	THC2709447	NA	"BROAD Institute lincRNA (XLOC_008601), lincRNA [TCONS_00017862]"	chr10:106376629-106376688	hs|10q25.1	Agilent_HUMAN_G3V2	ENST00000450054	ENST00000450054	chr10	106376629	106376688	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009675	0.8770121	A	0.884172	A	0.995049430166595	0	lncRNA	TCONS_00026862	NA	NA	NA	NA	XLOC_012908	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012908), lincRNA [TCONS_00026862]"	chr19:786107-786166	hs|19p13.3	Agilent_HUMAN_G3V2	TCONS_00026862	TCONS_00026862	chr19	   786107	   786166	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49319_PI429285431	16.830725	P	16.814817	P	1.01108760220353	0	lncRNA	53135-1_{1..432}	hg19_lincRNAsTranscripts_TCONS_l2_00023383 range=chr5:43336266-43348818 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023383 range=chr5:43336266-43348818 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 43336266	 43336697	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_52229_PI429285431	1.0464742	A	1.6330045	A	0.665942583074535	0	lncRNA	55741-1_{1..1421}	hg19_lincRNAsTranscripts_TCONS_00030031 range=chr4_gl000193_random:73409-85550 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00030031 range=chr4_gl000193_random:73409-85550 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4_gl000193_random	    73409	    74829	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27390_PI429285431	4.957706	P	5.1183815	P	0.894606099558655	0	lncRNA	28952-1_{1..877}	n324552|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194570|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194570|-1.1310800|-0.2634531	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324552|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194570|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194570|-1.1310800|-0.2634531	chr6	 29573264	 29574140	+	NA	NA	NA	NA	GABBR1	"hg19_refFlat_GABBR1:range=chr6_cox_hap2:1090129-11143785'pad=0,hg19_refFlat_GABBR1:range=chr6_cox_hap2:1090129-11143785'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_GABBR1:range=chr6_apd_hap1:874862-8991035'pad=0,hg19_refFlat_GABBR1:range=chr6_apd_hap1:874862-8991035'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_GABBR1:range=chr6_qbl_hap6:874651-9034945'pad=0,hg19_refFlat_GABBR1:range=chr6_qbl_hap6:874651-9034945'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_GABBR1:range=chr6_cox_hap2:1090129-11189725'pad=0,hg19_refFlat_GABBR1:range=chr6_cox_hap2:1090129-11189725'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00;hg19_refFlat_GABBR1:range=chr6_mann_hap4:874344-8985555'pad=0,hg19_refFlat_GABBR1:range=chr6_mann_hap4:874344-8985555'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_GABBR1:range=chr6:29571320-296001625'pad=0,hg19_refFlat_GABBR1:range=chr6:29571320-296001625'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_GABBR1:range=chr6_mcf_hap5:874523-8987705'pad=0,hg19_refFlat_GABBR1:range=chr6_mcf_hap5:874523-8987705'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00;hg19_refFlat_GABBR1:range=chr6:29571320-295955685'pad=0,hg19_refFlat_GABBR1:range=chr6:29571320-295955685'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_GABBR1:range=chr6_qbl_hap6:874651-8989005'pad=0,hg19_refFlat_GABBR1:range=chr6_qbl_hap6:874651-8989005'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00;hg19_refFlat_GABBR1:range=chr6_apd_hap1:874862-9036975'pad=0,hg19_refFlat_GABBR1:range=chr6_apd_hap1:874862-9036975'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_GABBR1:range=chr6_dbb_hap3:874677-9035205'pad=0,hg19_refFlat_GABBR1:range=chr6_dbb_hap3:874677-9035205'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_GABBR1:range=chr6_dbb_hap3:874677-8989265'pad=0,hg19_refFlat_GABBR1:range=chr6_dbb_hap3:874677-8989265'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_GABBR1:range=chr6_mcf_hap5:874523-9033635'pad=0,hg19_refFlat_GABBR1:range=chr6_mcf_hap5:874523-9033635'pad=0 3'pad=0 strand=- repeatMasking=none,-95.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_GABBR1:range=chr6_mann_hap4:874344-9031545'pad=0,hg19_refFlat_GABBR1:range=chr6_mann_hap4:874344-9031545'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70chr6:29570005-29596312"	NA	inner
CUST_29580_PI429285431	1.7870393	A	1.6525811	A	1.09768050559414	0	lncRNA	31340-1_{1..334}	n333082|AF284222|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076227|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076227|-0.9801280|-0.1721494	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333082|AF284222|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000076227|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000076227|-0.9801280|-0.1721494	chr9	  1050355	  1050688	+	NA	NA	NA	NA	DMRT2	NA	chr9:1050346-1057554	inner
CUST_21145_PI429285431	0.90225375	A	0.9121321	A	0.993176237871998	0	lncRNA	22770-1_{1..3000}	lnc-GJA10-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GJA10-3:4	chr6	 90581008	 90584007	+	lnc-GJA10-3	lnc-GJA10-3:4	ENSG00000118412.8	CASP8AP2	CASP8AP2	NA	chr6:90571008-90584155	inner
LNCA_21_P0009015	2.6235893	A	3.1367035	P	0.700708256095702	0	lncRNA	TCONS_00024591	NA	NA	NA	NA	XLOC_011883	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011883), lincRNA [TCONS_00024591]"	chr16:14512552-14512493	hs|16p13.12	Agilent_HUMAN_G3V2	TCONS_00024591	TCONS_00024591	chr16	 14512493	 14512552	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11623_PI429285431	0.9005481	A	1.5369925	A	0.643296435563068	0	lncRNA	13202-1_{1..357}	lnc-HRCT1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HRCT1-3:3	chr9	 35937014	 35937370	+	lnc-HRCT1-3	lnc-HRCT1-3:3	XLOC_007342	linc-RECK-2	OR2S2	NA	chr9:35943207-35947148	inter
CUST_16856_PI429285431	0.8767572	A	0.8805723	A	0.997359067605338	0	lncRNA	18562-1_{1..770}	lnc-GNAI1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNAI1-1:1	chr7	 79327951	 79328720	+	lnc-GNAI1-1	lnc-GNAI1-1:1	XLOC_006156	linc-GNAI1-1	NA	NA	NA	inter
CUST_25971_PI429285431	0.905536	A	0.9099362	A	0.99695466025898	0	lncRNA	27491-1_{1..525}	lnc-YBEY-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YBEY-3:1	chr21	 47641677	 47642201	+	lnc-YBEY-3	lnc-YBEY-3:1	ENSG00000223901.1	AP001469.5	LSS	"hg19_refFlat_LSS:range=chr21:47611018-476475445'pad=0,hg19_refFlat_LSS:range=chr21:47611018-476475445'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_LSS:range=chr21:47611018-476486595'pad=0,hg19_refFlat_LSS:range=chr21:47611018-476486595'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70chr21:47631677-47648738"	NA	inner
CUST_28400_PI429285431	2.2664635	A	2.4538348	A	0.878204419589214	0	lncRNA	30057-1_{1..1020}	n325720|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045117|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045117|-0.6101880|-0.2874574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325720|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045117|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045117|-0.6101880|-0.2874574	chr13	 53598997	 53600016	-	NA	NA	NA	NA	OLFM4	"hg19_refFlat_OLFM4:range=chr13:53602972-536249065'pad=0,hg19_refFlat_OLFM4:range=chr13:53602972-536249065'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.90chr13:53602876-53615002"	NA	inner
LNCA_21_P0005659	0.87454647	A	0.87369657	A	1.00058927934565	0	lncRNA	TCONS_00014625	NA	NA	NA	NA	XLOC_006722	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006722), lincRNA [TCONS_00014625]"	chr8:12729395-12729454	hs|8p22	Agilent_HUMAN_G3V2	TCONS_00014625	TCONS_00014625	chr8	 12729395	 12729454	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5915_PI429285431	1.1260619	A	0.90033495	A	1.16936632434864	0	lncRNA	5845-1_{1..3000}	"transcript_id ""ENST00000584805.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584805.1"" | genecode_v17"	chr17	 56154252	 56157251	-	ENSG00000266290.1	ENST00000584805.1	RP11-159D12.10	RP11-159D12.10-001	DYNLL2	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10chr17:56160780-56167618"	NA	inter
CUST_37625_PI429285431	1.1195406	A	1.4807816	A	0.778494633861146	0	lncRNA	38722-1_{1..444}	n346103|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1653|NULL|-1.2890200|-0.3204043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346103|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1653|NULL|-1.2890200|-0.3204043	chr12	 81172483	 81172926	+	NA	NA	NA	NA	LIN7A	NA	chr12:81191171-81196177	inter
LNCA_21_P0007075	0.8748584	A	0.87554663	A	0.999523069083647	0	lncRNA	TCONS_00018323	NA	NA	NA	NA	XLOC_008604	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008604), lincRNA [TCONS_00018323]"	chr10:108069755-108069814	hs|10q25.1	Agilent_HUMAN_G3V2	TCONS_00018323	TCONS_00018323	chr10	108069755	108069814	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25969_PI429285431	0.8843322	A	0.87480193	A	1.00662774672794	0	lncRNA	27489-1_{1..552}	lnc-HLA-DQA1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HLA-DQA1-5:1	chr6	 32628132	 32628683	+	lnc-HLA-DQA1-5	lnc-HLA-DQA1-5:1	ENSG00000223534.1	HLA-DQB1-AS1	HLA-DQB1	NA	chr6:32627657-32634466	inner
CUST_16918_PI429285431	2.9279754	A	3.2146509	P	0.819788978970867	0	lncRNA	18628-1_{1..988}	lnc-NRSN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NRSN1-1:1	chr6	 23455187	 23456174	+	lnc-NRSN1-1	lnc-NRSN1-1:1	XLOC_005203	linc-NRSN1-1	NA	NA	NA	inter
CUST_23387_PI429285431	1.0299686	A	0.9035995	A	1.09154310240364	0	lncRNA	24955-1_{1..560}	lnc-C3orf65-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C3orf65-3:1	chr3	185798349	185798908	+	lnc-C3orf65-3	lnc-C3orf65-3:1	ENSG00000234197.1	ETV5-AS1	ETV5	NA	chr3:185788349-185808736	inner
LNCA_21_P0004999	1.2776769	A	0.86796945	A	1.32841641022701	0	lncRNA	TCONS_00012082	NA	NA	NA	NA	XLOC_005607	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005607), lincRNA [TCONS_00012082]"	chr6:11868341-11865836	hs|6p24.1	Agilent_HUMAN_G3V2	TCONS_00012082	TCONS_00012082	chr6	 11865836	 11868341	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4193_PI429285431	3.721055	P	4.3425736	P	0.649986383186609	0	lncRNA	4152-1_{1..409}	"transcript_id ""ENST00000446891.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446891.2"" | genecode_v17"	chr12	 24366276	 24366684	-	ENSG00000255864.1	ENST00000446891.2	RP11-444D3.1	RP11-444D3.1-006	SOX5	NA	chr12:24356276-24715380	inner
CUST_1010_PI429285431	8.028593	P	7.7750793	P	1.19210697219188	0	lncRNA	999-1_{1..1539}	"transcript_id ""ENST00000443205.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443205.1"" | genecode_v17"	chr2	108145943	108147481	+	ENSG00000224568.1	ENST00000443205.1	AC096669.3	AC096669.3-001	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90"	NA	inter
CUST_32283_PI429285431	0.91546595	A	0.9147484	A	1.00049749146726	0	lncRNA	33968-2_{3001..3314}	n338861|AL137337|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1285|NULL|-1.1543500|-0.3254613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n338861|AL137337|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1285|NULL|-1.1543500|-0.3254613	chr2	 64415042	 64415355	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40744_PI429285431	4.376875	P	4.2786736	P	1.07043812098944	0	lncRNA	41473-1_{1..3000}	n410455|NR_037598|lncRNA|Homosapiens||RefGeneNoncode|NR_037598||7.8897200|-0.2155902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410455|NR_037598|lncRNA|Homosapiens||RefGeneNoncode|NR_037598||7.8897200|-0.2155902	chr7	 30791750	 30794749	+	NA	NA	NA	NA	FAM188B	NA	chr7:30811033-30932002	inter
CUST_43612_PI429285431	6.418981	P	7.4248066	P	0.497985071768621	0	lncRNA	48375-1_{1..1582}	"gi|364023832|ref|NR_045658.1| Homo sapiens cAMP responsive element binding protein 3-like 4 (CREB3L4), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|364023832|ref|NR_045658.1| Homo sapiens cAMP responsive element binding protein 3-like 4 (CREB3L4), transcript variant 6, non-coding RNA"	Chr1	153940315	153941896	+	148327	NR_045658.1	NA	NA	NA	NA	NA	inter
CUST_3946_PI429285431	3.984018	P	3.9978929	P	0.990428750972893	0	lncRNA	3916-1_{1..2034}	"transcript_id ""ENST00000532274.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532274.1"" | genecode_v17"	chr11	 56615954	 56617987	+	ENSG00000255433.1	ENST00000532274.1	AP000479.1	AP000479.1-003	NA	NA	NA	inter
CUST_7342_PI429285431	2.950245	A	2.7505677	A	1.14844144449648	0	lncRNA	8916-1_{1..324}	"transcript_id ""ENST00000517169.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517169.1"" | genecode_v17"	chrX	 20470226	 20470549	+	ENSG00000252978.1	ENST00000517169.1	RN7SKP183	RN7SKP183-201	NA	NA	NA	inter
CUST_27088_PI429285431	0.9061118	A	0.90798545	A	0.998702127750785	0	lncRNA	28621-1_{1..746}	n324199|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000140192|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000140192|-1.0642100|-0.4788331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324199|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000140192|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000140192|-1.0642100|-0.4788331	chr7	114506287	114507032	+	NA	NA	NA	NA	MDFIC	NA	chr7:114562209-114563081	inter
CUST_15548_PI429285431	1.6622026	A	1.8621622	A	0.870574941792067	0	lncRNA	17234-1_{1..3000}	lnc-RP1-177G6.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP1-177G6.2.1-1:1	chrX	139856568	139859567	+	lnc-RP1-177G6.2.1-1	lnc-RP1-177G6.2.1-1:1	XLOC_008079	linc-SPANXB1-2	CDR1	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40chrX:139865425-139866723"	NA	inter
CUST_8379_PI429285431	0.92434084	A	0.96054065	A	0.975220386356349	0	lncRNA	9957-1_{1..651}	lnc-C20orf197-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C20orf197-3:1	chr20	 58676147	 58676797	+	lnc-C20orf197-3	lnc-C20orf197-3:1	ENSG00000228340	RP5-1043L13.1	NA	NA	NA	inter
LNCA_21_P0003065	0.90499645	A	0.9266194	A	0.985123872505809	0	lncRNA	TCONS_00006321	NA	NA	NA	NA	XLOC_002937	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002937), lincRNA [TCONS_00006321]"	chr3:180132244-180175502	hs|3q26.33	Agilent_HUMAN_G3V2	TCONS_00006321	TCONS_00006321	chr3	180132244	180175502	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51735_PI429285431	0.91094345	A	1.5426577	A	0.645409066679824	0	lncRNA	55289-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00012045 range=chr18:29281969-29306687 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012045 range=chr18:29281969-29306687 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 29281969	 29284968	-	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80"	NA	inter
LNCA_19_P00322983	0.89840066	A	0.9174079	A	0.986911593170499	0	lncRNA	THC2573057	NA	NA	NA	NA	XLOC_006037	NA	NA	THC2573057	NA	"BROAD Institute lincRNA (XLOC_006037), lincRNA [TCONS_00012989]"	chr7:030590314-030590373	hs|7p14.3	Agilent_HUMAN_G3V2	THC2573057	THC2573057	chr7	 30590314	 30590373	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31756_PI429285431	0.88551605	A	2.8877687	A	0.249609950095644	0	lncRNA	33496-1_{1..1041}	n338294|BC045573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|688|NULL|-1.2584600|-0.1787739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338294|BC045573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|688|NULL|-1.2584600|-0.1787739	chr19	  8509453	  8510493	-	NA	NA	NA	NA	HNRNPM	"hg19_refFlat_HNRNPM:range=chr19:8509883-85537385'pad=0,hg19_refFlat_HNRNPM:range=chr19:8509883-85537385'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.10chr19:8509803-8520481"	NA	inner
LNCA_21_P0002245	3.5627985	P	3.706053	P	0.905474237878359	0	lncRNA	ENST00000439259	NA	BC042517	NA	Hs.639404	XLOC_001543	NA	ENST00000439259	THC2606416	NA	"BROAD Institute lincRNA (XLOC_001543), lincRNA [TCONS_00003746]"	chr2:78354773-78354832	hs|2p12	Agilent_HUMAN_G3V2	ENST00000439259	ENST00000439259	chr2	 78354773	 78354832	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3239644	2.9782584	P	0.9022515	A	4.21638585888892	0	lncRNA	XR_113320	XR_113320	XR_113320	   645188	Hs.679802	LOC645188	uncharacterized LOC645188	ENST00000412163	THC2609849	NA	"PREDICTED: Homo sapiens hypothetical LOC645188 (LOC645188), miscRNA [XR_113320]"	chrX:140714803-140714862	hs|Xq27.2	Agilent_HUMAN_G3V2	XR_113320	XR_113320	chrX	140714803	140714862	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013547	0.8834978	A	0.8959849	A	0.991381951962533	0	lncRNA	TCONS_l2_00028603	NA	NA	NA	NA	XLOC_l2_014694	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014694), lincRNA [TCONS_l2_00028603]"	chr9:3651843-3651902	hs|9p24.2	Agilent_HUMAN_G3V2	TCONS_l2_00028603	TCONS_l2_00028603	chr9	  3651843	  3651902	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37480_PI429285431	5.2937255	P	4.9809136	P	1.24212632157352	0	lncRNA	38580-1_{1..270}	n345938|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1487|NULL|-1.3132100|-0.2254263	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345938|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1487|NULL|-1.3132100|-0.2254263	chr16	  2627449	  2627718	+	NA	NA	NA	NA	PDPK1	NA	chr16:2617449-2643464	inner
CUST_16413_PI429285431	4.507876	P	4.2099442	P	1.22938074981011	0	lncRNA	18110-1_{1..1129}	lnc-ARHGEF9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGEF9-1:2	chrX	 62780712	 62781840	-	lnc-ARHGEF9-1	lnc-ARHGEF9-1:2	XLOC_008174	linc-SPIN4	NA	NA	NA	inter
CUST_13098_PI429285431	0.8943966	A	0.8904364	A	1.00274877243062	0	lncRNA	14722-1_{1..1512}	lnc-HPRT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HPRT1-1:1	chrX	133693416	133694927	+	lnc-HPRT1-1	lnc-HPRT1-1:1	XLOC_008068	linc-FAM122C-2	PLAC1	NA	chrX:133699873-133704397	inter
CUST_31071_PI429285431	10.983053	P	9.670339	P	2.48408406969589	0	lncRNA	32861-1_{1..218}	n337303|BC131571|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000390534|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000390534|-1.4417800|-0.2435986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337303|BC131571|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000390534|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000390534|-1.4417800|-0.2435986	chr2	 55199694	 55199911	-	NA	NA	NA	NA	EML6	NA	chr2:55189694-55199157	inner
CUST_16765_PI429285431	3.7147632	P	4.1382575	P	0.745616504473015	0	lncRNA	18473-1_{1..947}	lnc-PDZK1IP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDZK1IP1-1:1	chr1	 47640226	 47641172	-	lnc-PDZK1IP1-1	lnc-PDZK1IP1-1:1	XLOC_000819	linc-CYP4A11-1	PDZK1IP1	NA	chr1:47649261-47650990	inter
LNCA_33_P3362208	4.9882307	P	4.992013	P	0.997381743048426	0	lncRNA	XR_110553	XR_110553	XR_110553	100129233	Hs.661860	LOC100129233	uncharacterized LOC100129233	NA	THC2490921	NA	"PREDICTED: Homo sapiens hypothetical LOC100129233 (LOC100129233), miscRNA [XR_110553]"	chr5:106758308-106758249	hs|5q21.3	Agilent_HUMAN_G3V2	XR_110553	XR_110553	chr5	106758249	106758308	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002140	2.7268512	A	1.2128215	A	2.85606675510111	0	lncRNA	ENST00000455896	NA	NA	NA	NA	XLOC_002496	NA	ENST00000455896	NA	NA	"BROAD Institute lincRNA (XLOC_002496), lincRNA [TCONS_00003500]"	chr2:220489840-220489781	hs|2q35	Agilent_HUMAN_G3V2	ENST00000455896	ENST00000455896	chr2	220489781	220489840	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12239_PI429285431	3.0713847	A	2.6200554	A	1.36729950704222	0	lncRNA	13845-1_{1..462}	lnc-PEX7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PEX7-2:1	chr6	136872308	136872769	+	lnc-PEX7-2	lnc-PEX7-2:1	XLOC_005473	linc-MAP7-BP	MAP3K5	NA	chr6:136878187-136882729	inter
LNCA_21_P0013217	2.6602616	A	2.8372486	A	0.884548405884666	0	lncRNA	TCONS_l2_00025938	NA	NA	NA	NA	XLOC_l2_013448	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013448), lincRNA [TCONS_l2_00025938]"	chr7:64033550-64033609	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025938	TCONS_l2_00025938	chr7	 64033550	 64033609	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47202_PI429285431	4.852851	P	5.317583	P	0.724605670020934	0	lncRNA	51277-1_{1..3000}	"gi|400154056|ref|NR_073102.1| Homo sapiens zinc finger protein 551 (ZNF551), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|400154056|ref|NR_073102.1| Homo sapiens zinc finger protein 551 (ZNF551), transcript variant 3, non-coding RNA"	Chr19	 58193337	 58196336	+	90233	NR_073102.1	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70"	NA	inter
CUST_8476_PI429285431	3.0264368	A	3.2010944	P	0.885977766440061	0	lncRNA	10041-1_{1..783}	lnc-ATOH8-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ATOH8-2:6	chr2	 86117845	 86118627	+	lnc-ATOH8-2	lnc-ATOH8-2:6	ENSG00000232504	AC105053.4	ST3GAL5	NA	chr2:86107845-86116157	inter
CUST_33256_PI429285431	3.2336655	P	3.0763104	P	1.11524068645843	0	lncRNA	34842-1_{1..2985}	n339961|AK126099|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2414|NULL|-1.0585400|-0.1393879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339961|AK126099|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2414|NULL|-1.0585400|-0.1393879	chr10	 11437806	 11440790	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44470_PI429285431	1.2371625	A	0.87396276	A	1.2862755549479	0	lncRNA	49074-1_{1..2109}	"gi|341915258|ref|XR_109820.2| PREDICTED: Homo sapiens double homeobox 4 like 9 (DUX4L9), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915258|ref|XR_109820.2| PREDICTED: Homo sapiens double homeobox 4 like 9 (DUX4L9), misc_RNA"	Chr4	190940255	190942363	-	554045	XR_109820.3	NA	NA	NA	NA	NA	inter
CUST_16351_PI429285431	0.9050189	A	0.8941724	A	1.00754655367618	0	lncRNA	18051-1_{1..2883}	lnc-RNASEH1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-RNASEH1-4:4	chr2	  4021135	  4024017	-	lnc-RNASEH1-4	lnc-RNASEH1-4:4	XLOC_001954	linc-RNASEH1-7	NA	NA	NA	inter
CUST_40439_PI429285431	6.9309373	P	6.9943094	P	0.957024590515162	0	lncRNA	41218-1_{1..3000}	n409330|NR_033685|lncRNA|Homosapiens||RefGeneNoncode|NR_033685||6.1430900|-0.0946908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409330|NR_033685|lncRNA|Homosapiens||RefGeneNoncode|NR_033685||6.1430900|-0.0946908	chr17	 79860776	 79863775	-	NA	NA	NA	NA	ANAPC11	NA	chr17:79850776-79858363	inter
LNCA_21_P0002280	4.3053217	P	4.9812317	P	0.625937276108285	0	lncRNA	TCONS_00003836	NA	NA	NA	NA	XLOC_001642	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001642), lincRNA [TCONS_00003836]"	chr2:121361363-121361422	hs|2q14.2	Agilent_HUMAN_G3V2	TCONS_00003836	TCONS_00003836	chr2	121361363	121361422	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_764_PI429285431	1.5761553	A	2.185765	A	0.655373979773581	0	lncRNA	755-1_{1..399}	"transcript_id ""ENST00000414086.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414086.1"" | genecode_v17"	chr2	 12739113	 12739511	+	ENSG00000223360.1	ENST00000414086.1	AC096559.2	AC096559.2-001	NA	NA	NA	inter
CUST_39237_PI429285431	2.7078247	A	2.0799727	A	1.54526256919447	0	lncRNA	40208-2_{3001..4062}	n386071|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010arh.1||-0.7641220|-0.2088952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386071|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010arh.1||-0.7641220|-0.2088952	chr14	 73078741	 73079802	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32377_PI429285431	3.7492213	P	3.7003636	P	1.03444554411211	0	lncRNA	34053-1_{1..2493}	n338966|CR610499|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1394|NULL|-0.9030060|-0.3221170	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338966|CR610499|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1394|NULL|-0.9030060|-0.3221170	chr2	136988322	136990814	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005035	1.1878588	A	2.2172713	A	0.489909611113871	0	lncRNA	TCONS_00012215	NA	NA	NA	NA	XLOC_005769	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005769), lincRNA [TCONS_00012215]"	chr6:78078705-78078646	hs|6q14.1	Agilent_HUMAN_G3V2	TCONS_00012215	TCONS_00012215	chr6	 78078646	 78078705	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49158_PI429285431	0.88254577	A	0.8922159	A	0.993319590468679	0	lncRNA	52984-1_{1..1161}	hg19_lincRNAsTranscripts_TCONS_l2_00021294 range=chr4:130646100-130665666 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021294 range=chr4:130646100-130665666 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	130646100	130647260	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70"	NA	inter
CUST_34189_PI429285431	3.6265	P	3.7912207	P	0.892101209936013	0	lncRNA	35704-1_{1..321}	n341039|Y19237|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3505|NULL|1.8481300|-0.0811825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341039|Y19237|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3505|NULL|1.8481300|-0.0811825	chr11	 61305613	 61305933	-	NA	NA	NA	NA	SYT7	NA	chr11:61295613-61319870	inner
CUST_37709_PI429285431	7.499967	P	7.3566813	P	1.10441753568722	0	lncRNA	38803-1_{1..1095}	n346205|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1755|NULL|-1.5989600|-0.1006991	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346205|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1755|NULL|-1.5989600|-0.1006991	chr15	 28895793	 28896887	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21233_PI429285431	1.0690596	A	0.983001	A	1.06146632316418	0	lncRNA	22859-1_{1..537}	lnc-RGS9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RGS9-2:1	chr17	 63049180	 63049716	+	lnc-RGS9-2	lnc-RGS9-2:1	ENSG00000266598.1	RP11-583F2.5	GNA13	NA	chr17:63039180-63052920	inner
CUST_7957_PI429285431	7.4626436	P	7.054161	P	1.32728906156373	0	lncRNA	9569-1_{1..510}	lnc-CPVL-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CPVL-4:1	chr7	 29603004	 29603513	-	lnc-CPVL-4	lnc-CPVL-4:1	ENSG00000223813	AC007255.8	PRR15	NA	chr7:29593004-29606911	inter
LNCA_21_P0007647	1.7981578	A	0.9298759	A	1.82548763922114	0	lncRNA	TCONS_00020608	NA	NA	NA	NA	XLOC_009926	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009926), lincRNA [TCONS_00020608]"	chr12:124572998-124574626	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00020608	TCONS_00020608	chr12	124572998	124574626	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014881	0.9072309	A	0.9293435	A	0.984789578672125	0	lncRNA	XR_132794	XR_132794	XR_132794	NA	Hs.688315	LOC100652978	uncharacterized LOC100652978	NA	THC2493499	NA	"PREDICTED: Homo sapiens hypothetical LOC100652978 (LOC100652978), miscRNA [XR_132794]"	chr1:54753553-54753612	hs|1p32.3	Agilent_HUMAN_G3V2	XR_132794	XR_132794	chr1	 54753553	 54753612	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_851_PI429285431	2.585236	A	2.8302662	A	0.843798132680985	0	lncRNA	845-1_{1..635}	"transcript_id ""ENST00000421463.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421463.1"" | genecode_v17"	chr2	 38685785	 38686419	-	ENSG00000231367.1	ENST00000421463.1	AC016995.3	AC016995.3-005	NA	NA	NA	inter
LNCA_21_P0003125	0.90475094	A	0.92628586	A	0.985183984378267	0	lncRNA	TCONS_00006526	NA	NA	NA	NA	XLOC_003151	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003151), lincRNA [TCONS_00006526]"	chr3:65151196-65151137	hs|3p14.1	Agilent_HUMAN_G3V2	TCONS_00006526	TCONS_00006526	chr3	 65151137	 65151196	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005858	0.90355206	A	0.9246638	A	0.98547300686602	0	lncRNA	TCONS_00015039	NA	NA	NA	NA	XLOC_007120	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007120), lincRNA [TCONS_00015039]"	chr8:74282731-74281849	hs|8q21.11	Agilent_HUMAN_G3V2	TCONS_00015039	TCONS_00015039	chr8	 74281849	 74282731	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13983_PI429285431	1.0218945	A	0.91106564	A	1.0798484549867	0	lncRNA	15628-1_{1..864}	lnc-IVNS1ABP-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IVNS1ABP-2:4	chr1	185597539	185598402	-	lnc-IVNS1ABP-2	lnc-IVNS1ABP-2:4	XLOC_001126	linc-IVNS1ABP	NA	NA	NA	inter
CUST_3903_PI429285431	1.2363898	A	0.8922795	A	1.26936793073591	0	lncRNA	3872-1_{1..429}	"transcript_id ""ENST00000527819.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527819.1"" | genecode_v17"	chr11	 30065605	 30066033	-	ENSG00000254532.1	ENST00000527819.1	RP11-624D11.2	RP11-624D11.2-001	NA	NA	NA	inter
CUST_123_PI429285431	2.0073307	A	1.4932791	A	1.42805505515216	0	lncRNA	115-1_{1..607}	"transcript_id ""ENST00000588951.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588951.1"" | genecode_v17"	chr1	   719750	   720356	+	ENSG00000237491.3	ENST00000588951.1	RP11-206L10.9	RP11-206L10.9-002	NA	NA	NA	inter
CUST_42290_PI429285431	1.1522342	A	0.91849494	A	1.17587871311949	0	lncRNA	44904-1_{1..72}	ENST00000391082 ncrna:snoRNA chromosome:GRCh37:14:101393679:101393750:1 gene:ENSG00000212384 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391082 ncrna:snoRNA chromosome:GRCh37:14:101393679:101393750:1 gene:ENSG00000212384 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101393679	101393750	+	ENSG00000212384	ENST00000391082	NA	NA	NA	NA	NA	inter
CUST_6682_PI429285431	12.33994	P	12.0022335	P	1.26374597746389	0	lncRNA	6630-1_{1..660}	"transcript_id ""ENST00000440595.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440595.1"" | genecode_v17"	chr20	 32580294	 32580953	-	ENSG00000228265.1	ENST00000440595.1	RP5-1125A11.1	RP5-1125A11.1-001	RALY	NA	chr20:32581732-32592161	inner
CUST_14075_PI429285431	0.8903143	A	1.1865603	A	0.814368689799746	0	lncRNA	15720-1_{1..656}	lnc-PPAPDC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPAPDC3-1:1	chr9	134163129	134163784	+	lnc-PPAPDC3-1	lnc-PPAPDC3-1:1	XLOC_007590	linc-PPAPDC3	PPAPDC3	NA	chr9:134165081-134173625	inter
CUST_4567_PI429285431	0.89041156	A	0.89822245	A	0.994600533424348	0	lncRNA	4516-1_{1..1845}	"transcript_id ""ENST00000567234.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000567234.1"" | genecode_v17"	chr13	 28527663	 28529507	+	ENSG00000260704.1	ENST00000567234.1	LINC00543	LINC00543-001	CDX2	NA	chr13:28536278-28539507	inter
CUST_16068_PI429285431	0.8857775	A	0.88876885	A	0.997928702285298	0	lncRNA	17771-1_{1..302}	lnc-RFPL4B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RFPL4B-3:1	chr6	113065798	113066099	+	lnc-RFPL4B-3	lnc-RFPL4B-3:1	XLOC_005434	linc-MARCKS-4	NA	NA	NA	inter
CUST_33368_PI429285431	0.89808553	A	0.8894834	A	1.00598035349348	0	lncRNA	34948-1_{1..1616}	n340086|AK130923|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2541|NULL|2.5464900|-0.2112879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340086|AK130923|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2541|NULL|2.5464900|-0.2112879	chr10	 79214866	 79216481	-	NA	NA	NA	NA	KCNMA1	NA	chr10:79204866-79226481	inner
LNCA_21_P0006417	0.87415045	A	1.8995403	A	0.49127752663678	0	lncRNA	ENST00000423914	NA	NA	NA	NA	XLOC_007944	NA	ENST00000423914	THC2628857	NA	"BROAD Institute lincRNA (XLOC_007944), lincRNA [TCONS_00016973]"	chrX:25896457-25898911	hs|Xp21.3	Agilent_HUMAN_G3V2	ENST00000423914	ENST00000423914	chrX	 25896457	 25898911	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008551	2.8625581	A	3.3972907	P	0.690286607777839	0	lncRNA	TCONS_00023178	NA	NA	NA	NA	XLOC_011152	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011152), lincRNA [TCONS_00023178]"	chr14:105538844-105538785	hs|14q32.33	Agilent_HUMAN_G3V2	TCONS_00023178	TCONS_00023178	chr14	105538785	105538844	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47336_PI429285431	0.88881505	A	0.88555104	A	1.00226500057587	0	lncRNA	51390-1_{1..3000}	"gi|375268720|ref|NR_046317.1| Homo sapiens cholinergic receptor, nicotinic, alpha 4 (neuronal) (CHRNA4), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375268720|ref|NR_046317.1| Homo sapiens cholinergic receptor, nicotinic, alpha 4 (neuronal) (CHRNA4), transcript variant 3, non-coding RNA"	Chr20	 61974662	 61977661	-	1137	NR_046317.1	NA	NA	NA	NA	NA	inter
CUST_10205_PI429285431	1.3095355	A	1.1111182	A	1.14743887328963	0	lncRNA	11731-1_{1..706}	lnc-SOD2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOD2-3:2	chr6	159804046	159804751	-	lnc-SOD2-3	lnc-SOD2-3:2	XLOC_005899	linc-TAGAP-6	NA	NA	NA	inter
CUST_21272_PI429285431	6.9639645	P	6.7894735	P	1.12856616296898	0	lncRNA	22897-1_{1..789}	lnc-PPDPF-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPDPF-2:1	chr20	 62080414	 62081202	+	lnc-PPDPF-2	lnc-PPDPF-2:1	ENSG00000226390.1	RP11-358D14.2	KCNQ2	NA	chr20:62070414-62090682	inner
CUST_39153_PI429285431	4.072075	P	3.1410983	P	1.9065662986541	0	lncRNA	40130-1_{1..829}	n385805|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004elt.1||1.4385600|-0.1681767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385805|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004elt.1||1.4385600|-0.1681767	chrX	103315218	103316046	-	NA	NA	NA	NA	MCART6	NA	chrX:103315219-103327502	inter
CUST_8281_PI429285431	0.8952012	A	0.89838606	A	0.997794858175954	0	lncRNA	9865-1_{1..760}	lnc-PDZD7-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PDZD7-4:1	chr10	102900445	102901204	-	lnc-PDZD7-4	lnc-PDZD7-4:1	ENSG00000236311	RP11-108L7.11	TLX1	NA	chr10:102891061-102897546	inter
LNCA_21_P0011224	0.8736432	A	0.872925	A	1.00049794223717	0	lncRNA	ENST00000428706	NA	NA	NA	NA	XLOC_l2_003936	NA	ENST00000428706	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003936), lincRNA [TCONS_l2_00007523]"	chr13:35108118-35108059	hs|13q13.2	Agilent_HUMAN_G3V2	ENST00000428706	ENST00000428706	chr13	 35108059	 35108118	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15103_PI429285431	1.1525283	A	0.90986735	A	1.18317292977044	0	lncRNA	16768-1_{1..211}	lnc-IGFBP7-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGFBP7-5:3	chr4	 59853822	 59854032	-	lnc-IGFBP7-5	lnc-IGFBP7-5:3	XLOC_003962	linc-IGFBP7-7	NA	NA	NA	inter
LNCA_21_P0014739	5.1557045	P	5.3374844	P	0.881614648272455	0	lncRNA	XR_113295	XR_113295	XR_113295	NA	Hs.308060	LOC440570	uncharacterized LOC440570	ENST00000438002	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC440570 (LOC440570), miscRNA [XR_113295]"	chr1:016862274-016862215	hs|1p36.13	Agilent_HUMAN_G3V2	XR_113295	XR_113295	chr1	 16862215	 16862274	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29342_PI429285431	3.5833142	P	3.9761045	P	0.761655070627974	0	lncRNA	31094-1_{1..1163}	n332583|AK307939|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000426805|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000426805|3.3471100|-0.2990022	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332583|AK307939|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000426805|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000426805|3.3471100|-0.2990022	chr10	 70176475	 70177637	-	NA	NA	NA	NA	RUFY2	NA	chr10:70166475-70167051	inner
CUST_51589_PI429285431	2.6253157	P	2.6757228	A	0.965663799254791	0	lncRNA	55153-2_{3001..4274}	hg19_lincRNAsTranscripts_TCONS_l2_00010618 range=chr17:20628944-20644030 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010618 range=chr17:20628944-20644030 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 20631944	 20633217	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10654_PI429285431	2.0324159	A	1.0626265	A	1.95855467076913	0	lncRNA	12186-1_{1..764}	lnc-AC011239.1.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC011239.1.1-1:3	chr2	 23598469	 23599232	-	lnc-AC011239.1.1-1	lnc-AC011239.1.1-1:3	XLOC_002022	linc-APOB-9	KLHL29	NA	chr2:23608298-23608578	inter
CUST_27544_PI429285431	2.0417593	A	2.4810116	A	0.737516739573132	0	lncRNA	29119-1_{1..463}	n324730|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319436|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319436|-1.1931200|-0.3470700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324730|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319436|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319436|-1.1931200|-0.3470700	chr22	 18758813	 18759275	+	NA	NA	NA	NA	NA	"hg19_refFlat_TBC1D29:range=chr17:28886733-288904435'pad=0,hg19_refFlat_TBC1D29:range=chr17:28886733-288904435'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	inter
LNCA_21_P0005518	3.5643914	P	4.05485	P	0.711798797154872	0	lncRNA	TCONS_00013898	NA	NA	NA	NA	XLOC_006529	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006529), lincRNA [TCONS_00013898]"	chr7:96278447-96278388	hs|7q21.3	Agilent_HUMAN_G3V2	TCONS_00013898	TCONS_00013898	chr7	 96278388	 96278447	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002638	4.6053014	P	4.986893	P	0.767590307716642	0	lncRNA	TCONS_00005054	NA	NA	NA	NA	XLOC_001934	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001934), lincRNA [TCONS_00005054]"	chr2:741110-741051	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00005054	TCONS_00005054	chr2	   741051	   741110	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001737	5.71608	P	5.891184	P	0.885703668808902	0	lncRNA	TCONS_00002447	NA	NA	NA	NA	XLOC_000974	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000974), lincRNA [TCONS_00002447]"	chr1:116832252-116832193	hs|1p13.1	Agilent_HUMAN_G3V2	TCONS_00002447	TCONS_00002447	chr1	116832193	116832252	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48885_PI429285431	13.546146	P	12.971792	P	1.48901057497728	0	lncRNA	52722-1_{1..1005}	hg19_lincRNAsTranscripts_TCONS_l2_00019360 range=chr3:75673411-75679341 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019360 range=chr3:75673411-75679341 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 75673411	 75674415	-	NA	NA	NA	NA	NA	"hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10"	NA	inter
CUST_172_PI429201921	1.1991376	A	0.90612173	A	1.22519880931855	0	lncRNA	145-1_{1..3000}	TC07002109.hg.1	TCONS_l2_00027030-XLOC_l2_013256 // Broad TUCP // linc-CHST12 chr7:+:2423755-2428232 // chr7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr7:+:2423755-2428232	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00027030-XLOC_l2_013256	linc-CHST12	chr7	  2423755	  2428232	+	NA	NA	NA	NA	CAMTA1	NA	chr1:7748363-7768932	Unknown
CUST_40636_PI429285431	4.4314733	P	4.1769013	P	1.19298177221319	0	lncRNA	41377-1_{1..3000}	n410141|NR_036585|lncRNA|Homosapiens||RefGeneNoncode|NR_036585||4.3937400|-0.3063774	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410141|NR_036585|lncRNA|Homosapiens||RefGeneNoncode|NR_036585||4.3937400|-0.3063774	chr6	   391738	   394737	+	NA	NA	NA	NA	IRF4	NA	chr6:391739-411443	inner
CUST_6205_PI429285431	4.8444023	P	4.7121797	P	1.09598085728922	0	lncRNA	6131-1_{1..580}	"transcript_id ""ENST00000589293.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589293.1"" | genecode_v17"	chr18	 53763152	 53763731	-	ENSG00000267712.1	ENST00000589293.1	RP11-456O19.4	RP11-456O19.4-006	NA	NA	NA	inter
CUST_17522_PI429285431	2.0878193	A	0.9259152	A	2.23752546251264	0	lncRNA	19246-1_{1..444}	lnc-MPPE1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MPPE1-1:1	chr18	 11918850	 11919293	-	lnc-MPPE1-1	lnc-MPPE1-1:1	XLOC_012771	linc-MPPE1-1	NA	NA	NA	inter
CUST_9227_PI429285431	1.8896655	A	1.9165859	A	0.981513216875801	0	lncRNA	10738-1_{1..3000}	lnc-CALHM3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALHM3-2:1	chr10	105407652	105410651	-	lnc-CALHM3-2	lnc-CALHM3-2:1	ENSG00000245012	ENST00000502138	SH3PXD2A	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40chr10:105397652-105418105"	NA	inner
CUST_19927_PI429285431	2.2088242	A	1.2963146	A	1.88231698430649	0	lncRNA	21582-1_{1..490}	lnc-CLEC18B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLEC18B-2:1	chr16	 74368790	 74369279	-	lnc-CLEC18B-2	lnc-CLEC18B-2:1	ENSG00000259972.1	AC009120.6	NA	NA	NA	inter
LNCA_19_P00321761	5.1158376	P	4.5711355	P	1.4587191043544	0	lncRNA	ENST00000412979	NA	NA	NA	NA	XLOC_002310	NA	ENST00000412979	THC2724680	GO:0005634|GO:0003677|GO:0006351	"BROAD Institute lincRNA (XLOC_002310), lincRNA [TCONS_00004437]"	chr2:128227640-128227581	hs|2q14.3	Agilent_HUMAN_G3V2	ENST00000412979	ENST00000412979	chr2	128227581	128227640	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47066_PI429285431	1.8076739	A	1.1366429	A	1.59221040991084	0	lncRNA	51153-1_{1..2314}	"gi|380748931|ref|NR_015379.3| Homo sapiens urothelial cancer associated 1 (non-protein coding) (UCA1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|380748931|ref|NR_015379.3| Homo sapiens urothelial cancer associated 1 (non-protein coding) (UCA1), non-coding RNA"	NA	NA	NA	NA	NA	NR_015379.3	NA	NA	NA	NA	NA	Unknown
CUST_43716_PI429285431	0.89447945	A	1.5176097	A	0.649260681893082	0	lncRNA	48463-1_{1..2096}	"gi|410170419|ref|XR_110846.2| PREDICTED: Homo sapiens chromosome 1 open reading frame 147 (C1orf147), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170419|ref|XR_110846.2| PREDICTED: Homo sapiens chromosome 1 open reading frame 147 (C1orf147), misc_RNA"	NA	NA	NA	NA	NA	XR_110846.2	NA	NA	NA	"hg19_refFlat_IKBKE:range=chr1:206646571-2066672945'pad=0,hg19_refFlat_IKBKE:range=chr1:206646571-2066672945'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80;hg19_refFlat_IKBKE:range=chr1:206646571-2066694785'pad=0,hg19_refFlat_IKBKE:range=chr1:206646571-2066694785'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80;hg19_refFlat_IKBKE:range=chr1:206648235-2066694785'pad=0,hg19_refFlat_IKBKE:range=chr1:206648235-2066694785'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80"	NA	Unknown
CUST_37610_PI429285431	11.171459	P	10.876689	P	1.22668939811575	0	lncRNA	38709-1_{1..413}	n346089|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1639|NULL|-1.5847800|-0.4661148	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346089|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1639|NULL|-1.5847800|-0.4661148	chr3	 96336525	 96336937	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17499_PI429285431	12.330186	P	11.702789	P	1.54477529808793	0	lncRNA	19224-2_{3001..3392}	lnc-ARFGEF2-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARFGEF2-2:9	chr20	 47135445	 47135836	+	lnc-ARFGEF2-2	lnc-ARFGEF2-2:9	XLOC_013553	linc-ARFGEF2-2	NA	NA	NA	inter
LNCA_21_P0013853	6.7330275	P	6.9520206	P	0.85916486407851	0	lncRNA	BC041435	NA	BC041435	NA	Hs.639263	XLOC_l2_015612	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015612), lincRNA [TCONS_l2_00030743]"	chrX:122867081-122867140	hs|Xq25	Agilent_HUMAN_G3V2	BC041435	BC041435	chrX	122867081	122867140	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3290089	0.9018259	A	0.9121105	A	0.992896607712706	0	lncRNA	XR_109536	XR_109536	XR_109536	100505585	Hs.631550	LOC100505585	uncharacterized LOC100505585	NA	THC2510519	NA	"PREDICTED: Homo sapiens hypothetical LOC100505585 (LOC100505585), miscRNA [XR_109536]"	chr19:42434231-42434290	hs|19q13.2	Agilent_HUMAN_G3V2	XR_109536	XR_109536	chr19	 42434231	 42434290	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17315_PI429285431	1.1875306	A	0.8920752	A	1.22727231594645	0	lncRNA	19033-1_{1..699}	lnc-QPCT-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-QPCT-3:3	chr2	 37839316	 37840014	+	lnc-QPCT-3	lnc-QPCT-3:3	XLOC_001430	linc-FAM82A1-3	NA	NA	NA	inter
LNCA_21_P0014510	7.406854	P	7.4467854	P	0.972701198154049	0	lncRNA	XR_108275	XR_108275	XR_108275	NA	Hs.163898	LOC645321	uncharacterized LOC645321	NA	THC2717666	NA	"PREDICTED: Homo sapiens hypothetical LOC645321, transcript variant 2 (LOC645321), miscRNA [XR_108275]"	chr18:76737386-76737327	hs|18q23	Agilent_HUMAN_G3V2	XR_108275	XR_108275	chr18	 76737327	 76737386	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003539	3.2891126	P	3.2054906	P	1.05967510193538	0	lncRNA	ENST00000504167	NA	NA	NA	NA	XLOC_004171	NA	ENST00000504167	NA	NA	"BROAD Institute lincRNA (XLOC_004171), lincRNA [TCONS_00007904]"	chr4:175085651-175085592	hs|4q34.1	Agilent_HUMAN_G3V2	ENST00000504167	ENST00000504167	chr4	175085592	175085651	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32427_PI429285431	1.1481186	A	1.8469031	A	0.616091057353453	0	lncRNA	34102-1_{1..2446}	n339021|BC046497|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1450|NULL|3.0955900|-0.3143840	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339021|BC046497|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1450|NULL|3.0955900|-0.3143840	chr2	175411868	175414313	+	NA	NA	NA	NA	WIPF1	NA	chr2:175424302-175547627	inner
CUST_44192_PI429285431	6.165214	P	5.7149234	P	1.36631544400515	0	lncRNA	48849-1_{1..2239}	"gi|258645123|ref|NR_028475.1| Homo sapiens solute carrier family 25 (S-adenosylmethionine carrier), member 26 (SLC25A26), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|258645123|ref|NR_028475.1| Homo sapiens solute carrier family 25 (S-adenosylmethionine carrier), member 26 (SLC25A26), transcript variant 3, non-coding RNA"	Chr3	 66271168	 66273406	+	115286	NR_028475.1	NA	NA	NA	NA	NA	inter
CUST_43843_PI429285431	0.8953484	A	0.90283406	A	0.994824773742493	0	lncRNA	48566-1_{1..680}	"gi|310118927|ref|XR_109988.1| PREDICTED: Homo sapiens uncharacterized LOC100506300 (LOC100506300), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310118927|ref|XR_109988.1| PREDICTED: Homo sapiens uncharacterized LOC100506300 (LOC100506300), misc_RNA"	NA	NA	NA	NA	NA	XR_109988.1	NA	NA	NA	NA	NA	Unknown
CUST_52009_PI429285431	3.484151	P	3.8050869	P	0.800550378907294	0	lncRNA	55541-1_{1..2708}	hg19_lincRNAsTranscripts_TCONS_l2_00017134 range=chr21:15215457-15218999 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017134 range=chr21:15215457-15218999 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 15215457	 15218164	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40868_PI429285431	11.556338	P	12.235226	P	0.624646553808159	0	lncRNA	41567-1_{1..3000}	n410672|NR_037921|lncRNA|Homosapiens||RefGeneNoncode|NR_037921||4.1761400|-0.2266335	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n410672|NR_037921|lncRNA|Homosapiens||RefGeneNoncode|NR_037921||4.1761400|-0.2266335	chr20	  3827445	  3830444	+	NA	NA	NA	NA	MAVS	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr20:3827446-3856770"	NA	inner
CUST_37578_PI429285431	5.934957	P	6.7026687	P	0.587348346244608	0	lncRNA	38680-1_{1..251}	n346054|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1604|NULL|-1.3082500|-0.1708891	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346054|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1604|NULL|-1.3082500|-0.1708891	chr14	 65746948	 65747198	-	NA	NA	NA	NA	NA	"hg19_refFlat_PTBP1:range=chr19:797498-8108265'pad=0,hg19_refFlat_PTBP1:range=chr19:797498-8108265'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20"	NA	inter
CUST_41994_PI429285431	0.9323001	A	2.914938	A	0.253026799128231	0	lncRNA	43826-1_{1..87}	ENST00000385225 ncrna:miRNA chromosome:GRCh37:7:157367028:157367114:-1 gene:ENSG00000207960 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385225 ncrna:miRNA chromosome:GRCh37:7:157367028:157367114:-1 gene:ENSG00000207960 gene_biotype:miRNA transcript_biotype:miRNA	chr7	157367028	157367114	-	ENSG00000207960	ENST00000385225	NA	NA	PTPRN2	NA	chr7:157357028-157377114	inner
CUST_13400_PI429285431	1.7407402	A	1.7901525	A	0.966329895414005	0	lncRNA	15037-1_{1..209}	lnc-RMI1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RMI1-3:1	chr9	 86711530	 86711738	+	lnc-RMI1-3	lnc-RMI1-3:1	XLOC_007426	linc-NTRK2-6	NA	NA	NA	inter
CUST_43765_PI429285431	0.9070465	A	1.1450162	A	0.847937773140142	0	lncRNA	48502-1_{1..1809}	"gi|299829190|ref|NR_033883.1| Homo sapiens uncharacterized LOC339529 (LOC339529), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299829190|ref|NR_033883.1| Homo sapiens uncharacterized LOC339529 (LOC339529), non-coding RNA"	Chr1	244080704	244082512	+	339529	NR_033883.1	NA	NA	NA	NA	NA	inter
CUST_47961_PI429285431	0.89409834	A	0.88542724	A	1.00602844690304	0	lncRNA	51852-1_{1..749}	"gi|410172612|ref|XR_171889.1| PREDICTED: Homo sapiens uncharacterized LOC100507109 (LOC100507109), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410172612|ref|XR_171889.1| PREDICTED: Homo sapiens uncharacterized LOC100507109 (LOC100507109), misc_RNA"	NA	NA	NA	NA	NA	XR_171889.1	NA	NA	NA	NA	NA	Unknown
CUST_8277_PI429285431	2.2823298	A	2.8491454	A	0.67510527653263	0	lncRNA	9861-1_{1..399}	lnc-SNX17-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SNX17-1:3	chr2	 27590291	 27590689	+	lnc-SNX17-1	lnc-SNX17-1:3	ENSG00000234072	AC074117.10	EIF2B4	"hg19_refFlat_EIF2B4:range=chr2:27587267-275928805'pad=0,hg19_refFlat_EIF2B4:range=chr2:27587267-275928805'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_EIF2B4:range=chr2:27587267-275931815'pad=0,hg19_refFlat_EIF2B4:range=chr2:27587267-275931815'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50chr2:27587219-27593324"	NA	inner
CUST_9355_PI429285431	4.038852	P	4.454807	P	0.7495231793577	0	lncRNA	10859-1_{1..701}	lnc-KCNG2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNG2-1:1	chr18	 77616379	 77617079	+	lnc-KCNG2-1	lnc-KCNG2-1:1	XLOC_012735	linc-KCNG2	KCNG2	NA	chr18:77623668-77626415	inter
CUST_26811_PI429285431	0.88397574	A	0.87970626	A	1.00296376130647	0	lncRNA	28324-1_{1..1960}	n323880|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056348|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056348|1.2401600|-0.2254895	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323880|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056348|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056348|1.2401600|-0.2254895	chrX	 45592271	 45594230	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50"	NA	inter
CUST_24201_PI429285431	0.8738031	A	0.87317157	A	1.00043783906249	0	lncRNA	25752-1_{1..667}	lnc-USP50-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP50-1:1	chr15	 50790500	 50791166	-	lnc-USP50-1	lnc-USP50-1:1	ENSG00000259298.1	RP11-562A8.4	USP8	"hg19_refFlat_USP8:range=chr15:50731271-507912855'pad=0,hg19_refFlat_USP8:range=chr15:50731271-507912855'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10chr15:50780500-50793277"	NA	inner
CUST_38595_PI429285431	2.4719753	A	2.2971203	A	1.12885094242642	0	lncRNA	39604-1_{1..3000}	n383678|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002suu.2||1.1418000|-0.1814591	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n383678|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002suu.2||1.1418000|-0.1814591	chr2	 96192398	 96195397	+	NA	NA	NA	NA	TRIM43	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-58.44chr2:96191094-96208153"	NA	inter
CUST_13594_PI429285431	2.3114808	A	2.9269977	A	0.652695998647295	0	lncRNA	15233-1_{1..462}	lnc-ISOC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-ISOC1-1:1	chr5	128078130	128078591	+	lnc-ISOC1-1	lnc-ISOC1-1:1	XLOC_004544	linc-SLC27A6	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10"	NA	inter
CUST_13228_PI429285431	0.8786687	A	0.88399744	A	0.996313211846939	0	lncRNA	14855-2_{3001..4474}	lnc-IFT20-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-IFT20-1:1	chr17	 26596522	 26597995	-	lnc-IFT20-1	lnc-IFT20-1:1	XLOC_012429	linc-C17orf108-4	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20"	NA	inter
CUST_9148_PI429285431	6.2798567	P	5.6354446	P	1.56310219039611	0	lncRNA	10667-1_{1..555}	lnc-VAPB-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VAPB-1:2	chr20	 57122868	 57123422	+	lnc-VAPB-1	lnc-VAPB-1:2	ENSG00000231290	RP5-907D15.2	NA	NA	NA	inter
CUST_26716_PI429285431	0.88551366	A	0.92220026	A	0.974891385814424	0	lncRNA	28212-1_{1..399}	n2379|AJ297963|TTY2RNA|Homosapiens|TTY2|NONCODEv2.0|n2379|NULL|-1.5906100|-0.1881518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n2379|AJ297963|TTY2RNA|Homosapiens|TTY2|NONCODEv2.0|n2379|NULL|-1.5906100|-0.1881518	chrY	  8607608	  8608006	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29252_PI429285431	8.593877	P	8.468853	P	1.0905258739928	0	lncRNA	31003-1_{1..438}	n332341|FJ472654|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558624|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558624|2.2817600|-0.1398714	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332341|FJ472654|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558624|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558624|2.2817600|-0.1398714	chr1	 24130934	 24131371	-	NA	NA	NA	NA	HMGCL	NA	chr1:24128367-24151949	inner
CUST_36430_PI429285431	0.89126074	A	0.9102696	A	0.986910484969641	0	lncRNA	37644-1_{1..3000}	n344943|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_492|NULL|-1.3080000|-0.4555045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344943|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_492|NULL|-1.3080000|-0.4555045	chr7	  7933668	  7936667	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003871	4.581019	P	3.9796343	P	1.51717205101241	0	lncRNA	TCONS_00008969	NA	NA	NA	NA	XLOC_003825	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003825), lincRNA [TCONS_00008969]"	chr4:188135236-188135295	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008969	TCONS_00008969	chr4	188135236	188135295	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31984_PI429285431	3.6129477	P	4.397625	P	0.580481784021547	0	lncRNA	33706-1_{1..520}	n338543|AF086260|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|947|NULL|-0.9766180|-0.1866800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338543|AF086260|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|947|NULL|-0.9766180|-0.1866800	chr1	226281163	226281682	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001271	3.2966182	P	3.4675806	P	0.888249945407481	0	lncRNA	ENST00000477916	NA	BC041472	NA	Hs.523369	XLOC_000094	NA	ENST00000477916	THC2497640	NA	"BROAD Institute lincRNA (XLOC_000094), lincRNA [TCONS_00000866]"	chr1:23919003-23919062	hs|1p36.11	Agilent_HUMAN_G3V2	ENST00000477916	ENST00000477916	chr1	 23919003	 23919062	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001490	1.8027798	A	2.0741773	A	0.828516595169919	0	lncRNA	TCONS_00001451	NA	NA	NA	NA	XLOC_000781	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000781), lincRNA [TCONS_00001451]"	chr1:35081268-35081209	hs|1p34.3	Agilent_HUMAN_G3V2	TCONS_00001451	TCONS_00001451	chr1	 35081209	 35081268	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34400_PI429285431	0.9179067	A	0.95083034	A	0.977437499556177	0	lncRNA	35882-1_{1..2872}	n341270|BC035072|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3738|NULL|-1.2073000|-0.3996513	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341270|BC035072|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3738|NULL|-1.2073000|-0.3996513	chr7	 87900206	 87903077	-	NA	NA	NA	NA	STEAP4	NA	chr7:87905744-87913065	inter
CUST_20412_PI429285431	8.7182665	P	8.966342	P	0.842018887407534	0	lncRNA	22054-1_{1..2844}	lnc-RPS25-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS25-1:1	chr11	118901559	118904402	-	lnc-RPS25-1	lnc-RPS25-1:1	ENSG00000137700.10	SLC37A4	SLC37A4	NA	chr11:118895061-118901616	inner
CUST_41550_PI429285431	0.8932711	A	1.7125399	A	0.566729104739897	0	lncRNA	42844-1_{1..85}	ENST00000390811 ncrna:miRNA chromosome:GRCh37:X:113873918:113874002:1 gene:ENSG00000212100 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390811 ncrna:miRNA chromosome:GRCh37:X:113873918:113874002:1 gene:ENSG00000212100 gene_biotype:miRNA transcript_biotype:miRNA	chrX	113873918	113874002	+	ENSG00000212100	ENST00000390811	NA	NA	HTR2C	NA	chrX:113863918-113884002	inner
CUST_37157_PI429285431	2.7774827	A	1.0378184	A	3.33957450334699	0	lncRNA	38275-1_{1..3000}	n345594|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1143|NULL|-1.2491200|-0.2846025	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n345594|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1143|NULL|-1.2491200|-0.2846025	chr3	114033686	114036685	-	NA	NA	NA	NA	ZBTB20	NA	chr3:114056941-114062767	inter
CUST_36814_PI429285431	3.5227363	P	3.3905933	P	1.09592038874452	0	lncRNA	37985-1_{1..2884}	n345293|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_842|NULL|-1.2942900|-0.2321056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345293|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_842|NULL|-1.2942900|-0.2321056	chr15	 40338161	 40341044	+	NA	NA	NA	NA	SRP14	NA	chr15:40328161-40331389	inter
CUST_15623_PI429285431	7.5849366	P	7.049872	P	1.4490070357364	0	lncRNA	17311-1_{1..407}	lnc-C10orf136-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf136-1:6	chr10	 44439305	 44439711	+	lnc-C10orf136-1	lnc-C10orf136-1:6	XLOC_008473	linc-TMEM72-2	NA	NA	NA	inter
CUST_52038_PI429285431	0.89841056	A	0.9072337	A	0.993902928424805	0	lncRNA	55568-1_{1..425}	hg19_lincRNAsTranscripts_TCONS_l2_00016988 range=chr21:25801019-25813516 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016988 range=chr21:25801019-25813516 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr21	 25801019	 25801443	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009242	7.2839365	P	6.781698	P	1.41640957346302	0	lncRNA	TCONS_00025370	NA	NA	NA	NA	XLOC_012184	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012184), lincRNA [TCONS_00025370]"	chr17:35079110-35080651	hs|17q12	Agilent_HUMAN_G3V2	TCONS_00025370	TCONS_00025370	chr17	 35079110	 35080651	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6216_PI429285431	0.9084773	A	0.9219136	A	0.990729901303895	0	lncRNA	6142-1_{1..625}	"transcript_id ""ENST00000587011.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000587011.1"" | genecode_v17"	chr18	 56419411	 56420035	-	ENSG00000267705.1	ENST00000587011.1	RP11-108P20.3	RP11-108P20.3-001	MALT1	NA	chr18:56409411-56417370	inter
CUST_30740_PI429285431	9.36528	P	9.538319	P	0.886972327535707	0	lncRNA	32524-1_{1..239}	n336306|Y18488|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326090_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326090_06|-1.0265300|-0.1585685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336306|Y18488|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326090_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326090_06|-1.0265300|-0.1585685	chr6	  3064593	  3064831	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007887	0.9063778	A	0.92826706	A	0.984942043277291	0	lncRNA	ENST00000549004	NA	NA	NA	NA	XLOC_010167	NA	ENST00000549004	THC2725477	NA	"BROAD Institute lincRNA (XLOC_010167), lincRNA [TCONS_00021390]"	chr12:98884834-98884775	hs|12q23.1	Agilent_HUMAN_G3V2	ENST00000549004	ENST00000549004	chr12	 98884775	 98884834	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17679_PI429285431	2.2737894	A	2.5639915	A	0.817787490735753	0	lncRNA	19408-1_{1..212}	lnc-AHNAK-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AHNAK-2:1	chr11	 62179074	 62179285	-	lnc-AHNAK-2	lnc-AHNAK-2:1	XLOC_009457	linc-SCGB1D4-2	SCGB1A1	NA	chr11:62186507-62189162	inter
CUST_18094_PI429285431	7.647723	P	7.6119437	P	1.02511040698098	0	lncRNA	19829-1_{1..528}	lnc-GPR137B-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR137B-1:4	chr1	236260641	236261168	+	lnc-GPR137B-1	lnc-GPR137B-1:4	XLOC_000630	linc-GPR137B-1	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50"	NA	inter
LNCA_21_P0012021	0.8914155	A	0.9080513	A	0.988535169977942	0	lncRNA	ENST00000454927	NA	NA	NA	NA	XLOC_l2_007541	NA	ENST00000454927	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007541), lincRNA [TCONS_l2_00015473]"	chr2:127657135-127657194	hs|2q14.3	Agilent_HUMAN_G3V2	ENST00000454927	ENST00000454927	chr2	127657135	127657194	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14773_PI429285431	0.906209	A	0.9195417	A	0.990801048220071	0	lncRNA	16434-1_{1..653}	lnc-TRUB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRUB2-1:1	chr9	131100529	131101181	-	lnc-TRUB2-1	lnc-TRUB2-1:1	XLOC_007860	linc-TRUB2-2	SLC27A4	NA	chr9:131102839-131110554	inter
CUST_25595_PI429285431	8.177482	P	8.341944	P	0.892261193348796	0	lncRNA	27125-1_{1..601}	lnc-RP11-33N16.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-33N16.1.1-3:1	chr14	 89819746	 89820346	+	lnc-RP11-33N16.1.1-3	lnc-RP11-33N16.1.1-3:1	ENSG00000258752.1	RP11-356K23.1	FOXN3	NA	chr14:89809746-89830137	inner
CUST_26755_PI429285431	1.2778616	A	0.90825474	A	1.29200070745315	0	lncRNA	28253-1_{1..405}	n323805|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058414|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058414|-1.1571800|-0.2166688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323805|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058414|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058414|-1.1571800|-0.2166688	chrX	134358019	134358423	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35659_PI429285431	7.2781057	P	5.544686	P	3.32515063812908	0	lncRNA	37080-1_{1..2139}	n342817|AK056630|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5320|NULL|-1.2792700|-0.4063964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342817|AK056630|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5320|NULL|-1.2792700|-0.4063964	chr7	 99637172	 99639310	+	NA	NA	NA	NA	ZKSCAN1	NA	chr7:99627172-99635403	inter
CUST_21227_PI429285431	1.827874	A	0.88358736	A	1.92423718593108	0	lncRNA	22853-1_{1..513}	lnc-BTBD17-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BTBD17-2:1	chr17	 72257728	 72258240	-	lnc-BTBD17-2	lnc-BTBD17-2:1	ENSG00000264272.1	CTD-2514K5.4	TTYH2	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70chr17:72247728-72258159"	NA	inner
CUST_45339_PI429285431	0.8816256	A	0.8836731	A	0.99858178776262	0	lncRNA	49777-1_{1..816}	"gi|310120321|ref|XR_108945.1| PREDICTED: Homo sapiens family with sequence similarity 220, member B, pseudogene (FAM220BP), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120321|ref|XR_108945.1| PREDICTED: Homo sapiens family with sequence similarity 220, member B, pseudogene (FAM220BP), misc_RNA"	Chr9	 38526944	 38527759	+	647044	XR_108945.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0009770	8.990894	P	9.275796	P	0.820797362387851	0	lncRNA	TCONS_00027378	NA	NA	NA	NA	XLOC_013360	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013360), lincRNA [TCONS_00027378]"	chr19:45457189-45456937	hs|19q13.32	Agilent_HUMAN_G3V2	TCONS_00027378	TCONS_00027378	chr19	 45456937	 45457189	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26843_PI429285431	0.9096803	A	0.92172754	A	0.991684258226759	0	lncRNA	28357-1_{1..517}	n323915|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055680|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055680|-1.1469300|-0.3510136	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323915|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055680|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055680|-1.1469300|-0.3510136	chrX	  6595905	  6596421	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_72_PI429285431	3.1829863	P	3.932944	P	0.594620991608015	0	lncRNA	67-2_{3001..4151}	"transcript_id ""ENST00000225973.5"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000225973.5"" | genecode_v17"	chr17	 41184274	 41185424	+	ENSG00000267267.1	ENST00000225973.5	CTD-3199J23.4	CTD-3199J23.4-001	VAT1	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40chr17:41171274-41174459"	NA	inner
CUST_42962_PI429285431	3.6538808	P	4.0913754	P	0.738415836851196	0	lncRNA	46099-1_{1..80}	ENST00000408587 ncrna:snoRNA chromosome:GRCh37:16:70563412:70563491:1 gene:ENSG00000221514 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408587 ncrna:snoRNA chromosome:GRCh37:16:70563412:70563491:1 gene:ENSG00000221514 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 70563412	 70563491	+	ENSG00000221514	ENST00000408587	NA	NA	COG4	NA	chr16:70553412-70557457	inner
LNCA_21_P0012155	6.1843233	P	6.716164	P	0.69167168353231	0	lncRNA	AK309218	NA	AK309218	NA	NA	XLOC_l2_008692	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008692), lincRNA [TCONS_l2_00016814]"	chr20:58729517-58755911	hs|20q13.33	Agilent_HUMAN_G3V2	AK309218	AK309218	chr20	 58729517	 58755911	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8057_PI429285431	1.9578806	A	2.2187088	A	0.834608662678976	0	lncRNA	9664-2_{3001..4287}	lnc-ZNF506-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF506-2:1	chr19	 20008974	 20010260	-	lnc-ZNF506-2	lnc-ZNF506-2:1	ENSG00000245381	AC011477.2	ZNF93	"hg19_refFlat_ZNF486:range=chr19:20278140-203089115'pad=0,hg19_refFlat_ZNF486:range=chr19:20278140-203089115'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF85:range=chr19:21106207-211331085'pad=0,hg19_refFlat_ZNF85:range=chr19:21106207-211331085'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF253:range=chr19:19976806-200035565'pad=0,hg19_refFlat_ZNF253:range=chr19:19976806-200035565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF506:range=chr19:19905361-199324125'pad=0,hg19_refFlat_ZNF506:range=chr19:19905361-199324125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF780A:range=chr19:40580423-405906605'pad=0,hg19_refFlat_ZNF780A:range=chr19:40580423-405906605'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF470:range=chr19:57081681-570899515'pad=0,hg19_refFlat_ZNF470:range=chr19:57081681-570899515'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.70;hg19_refFlat_ZNF100:range=chr19:21909485-219502315'pad=0,hg19_refFlat_ZNF100:range=chr19:21909485-219502315'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF85:range=chr19:21117817-211331085'pad=0,hg19_refFlat_ZNF85:range=chr19:21117817-211331085'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF626:range=chr19:20807096-208442525'pad=0,hg19_refFlat_ZNF626:range=chr19:20807096-208442525'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF681:range=chr19:23926414-239415515'pad=0,hg19_refFlat_ZNF681:range=chr19:23926414-239415515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZFP37:range=chr9:115805005-1158189685'pad=0,hg19_refFlat_ZFP37:range=chr9:115805005-1158189685'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_ZNF431:range=chr19:21324987-213668375'pad=0,hg19_refFlat_ZNF431:range=chr19:21324987-213668375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF502:range=chr3:44761754-447639445'pad=0,hg19_refFlat_ZNF502:range=chr3:44761754-447639445'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_ZNF93:range=chr19:20011898-200456275'pad=0,hg19_refFlat_ZNF93:range=chr19:20011898-200456275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF107:range=chr7:64152320-641690345'pad=0,hg19_refFlat_ZNF107:range=chr7:64152320-641690345'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF708:range=chr19:21476076-215120145'pad=0,hg19_refFlat_ZNF708:range=chr19:21476076-215120145'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80chr19:20011722-20018579"	NA	inter
LNCA_21_P0004567	0.8739084	A	0.8766771	A	0.998082723727988	0	lncRNA	TCONS_00010989	NA	NA	NA	NA	XLOC_004924	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004924), lincRNA [TCONS_00010989]"	chr5:90607514-90606842	hs|5q14.3	Agilent_HUMAN_G3V2	TCONS_00010989	TCONS_00010989	chr5	 90606842	 90607514	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50133_PI429285431	8.625609	P	8.534846	P	1.06493324617512	0	lncRNA	53860-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00029071 range=chr9:132250946-132268968 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029071 range=chr9:132250946-132268968 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	132250946	132253945	+	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30"	NA	inter
LNCA_19_P00321223	5.7845755	P	5.9602237	P	0.885369634916381	0	lncRNA	ENST00000437696	NA	NA	NA	NA	XLOC_013686	NA	ENST00000437696	THC2767541	NA	"BROAD Institute lincRNA (XLOC_013686), lincRNA [TCONS_00028639]"	chr20:22665925-22665866	hs|20p11.21	Agilent_HUMAN_G3V2	ENST00000437696	ENST00000437696	chr20	 22665866	 22665925	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39231_PI429285431	2.3000033	A	4.009886	A	0.305684922481175	0	lncRNA	40204-1_{1..1051}	n386054|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010adp.1||0.1155680|-0.2916988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386054|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010adp.1||0.1155680|-0.2916988	chr13	 50656413	 50657463	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010005	4.8249693	P	6.0987287	P	0.413580651816984	0	lncRNA	TCONS_00028320	NA	NA	NA	NA	XLOC_013657	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013657), lincRNA [TCONS_00028320]"	chr20:12931074-12927727	hs|20p12.1	Agilent_HUMAN_G3V2	TCONS_00028320	TCONS_00028320	chr20	 12927727	 12931074	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44641_PI429285431	0.8906261	A	0.8955008	A	0.996626817445414	0	lncRNA	49205-1_{1..1304}	"gi|410170497|ref|XR_171089.1| PREDICTED: Homo sapiens uncharacterized LOC101060059 (LOC101060059), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170497|ref|XR_171089.1| PREDICTED: Homo sapiens uncharacterized LOC101060059 (LOC101060059), misc_RNA"	NA	NA	NA	NA	NA	XR_171089.1	NA	NA	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30"	NA	Unknown
LNCA_21_P0009204	4.3910155	P	4.3947964	P	0.997382710914176	0	lncRNA	BX648922	NA	BX648922	NA	Hs.630666	XLOC_012583	NA	NA	THC2657442	NA	"BROAD Institute lincRNA (XLOC_012583), lincRNA [TCONS_00025255]"	chr17:77890207-77890148	hs|17q25.3	Agilent_HUMAN_G3V2	BX648922	BX648922	chr17	 77890148	 77890207	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013804	0.87432146	A	0.87330633	A	1.00070388210623	0	lncRNA	TCONS_l2_00030421	NA	NA	NA	NA	XLOC_l2_015661	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015661), lincRNA [TCONS_l2_00030421]"	chrX:698465-698406	hs|Xp22.33	Agilent_HUMAN_G3V2	TCONS_l2_00030421	TCONS_l2_00030421	chrX	   698406	   698465	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49108_PI429285431	9.503464	P	9.273337	P	1.17293819807556	0	lncRNA	52932-1_{1..577}	hg19_lincRNAsTranscripts_TCONS_l2_00021130 range=chr4:43982061-43996284 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021130 range=chr4:43982061-43996284 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 43982061	 43982637	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44810_PI429285431	1.3234744	A	1.925769	A	0.658705453715401	0	lncRNA	49344-1_{1..1780}	"gi|255652939|ref|NR_028290.1| Homo sapiens vanin 3 (VNN3), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|255652939|ref|NR_028290.1| Homo sapiens vanin 3 (VNN3), transcript variant 3, non-coding RNA"	Chr6	133043926	133045705	-	55350	NR_028290.1	NA	NA	NA	NA	NA	inter
CUST_14683_PI429285431	0.87885106	A	0.88393736	A	0.996480652965732	0	lncRNA	16352-1_{1..1333}	lnc-MARCH7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MARCH7-2:1	chr2	160762231	160763563	+	lnc-MARCH7-2	lnc-MARCH7-2:1	XLOC_001726	linc-TANK-2	LY75-CD302	NA	chr2:160752231-160761267	inter
CUST_25451_PI429285431	5.465115	P	5.8524485	P	0.764541383620942	0	lncRNA	26981-1_{1..562}	lnc-ATG16L2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATG16L2-4:1	chr11	 72370403	 72370964	+	lnc-ATG16L2-4	lnc-ATG16L2-4:1	ENSG00000255808.1	RP11-31L22.3	PDE2A	NA	chr11:72360403-72380451	inner
LNCA_21_P0014143	0.87490356	A	0.87418795	A	1.00049614609366	0	lncRNA	XR_108578	XR_108578	XR_108578	NA	Hs.146092	LOC100506791	uncharacterized LOC100506791	ENST00000504989	THC2604966	NA	"PREDICTED: Homo sapiens hypothetical LOC100506791, transcript variant 1 (LOC100506791), miscRNA [XR_108578]"	chr5:1363759-1363700	hs|5p15.33	Agilent_HUMAN_G3V2	XR_108578	XR_108578	chr5	  1363700	  1363759	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010017	1.6537731	A	0.87447506	A	1.7162955861651	0	lncRNA	TCONS_00028336	NA	NA	NA	NA	XLOC_013685	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013685), lincRNA [TCONS_00028336]"	chr20:22567983-22567924	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028336	TCONS_00028336	chr20	 22567924	 22567983	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009771	5.319238	P	5.1484866	P	1.12564460241067	0	lncRNA	TCONS_00027380	NA	NA	NA	NA	XLOC_013364	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013364), lincRNA [TCONS_00027380]"	chr19:46677222-46676750	hs|19q13.32	Agilent_HUMAN_G3V2	TCONS_00027380	TCONS_00027380	chr19	 46676750	 46677222	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13523_PI429285431	0.88280743	A	0.876735	A	1.00421795838484	0	lncRNA	15163-1_{1..1172}	lnc-CDC7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDC7-1:2	chr1	 91319785	 91320956	+	lnc-CDC7-1	lnc-CDC7-1:2	XLOC_000293	linc-CDC7	NA	NA	NA	inter
LNCA_21_P0010269	2.5267231	A	3.35538	P	0.563053181777828	0	lncRNA	TCONS_00029079	NA	NA	NA	NA	XLOC_014003	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014003), lincRNA [TCONS_00029079]"	chr21:16133861-16133802	hs|21q11.2	Agilent_HUMAN_G3V2	TCONS_00029079	TCONS_00029079	chr21	 16133802	 16133861	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51365_PI429285431	5.9555254	P	6.348565	P	0.761523466790132	0	lncRNA	54961-1_{1..807}	hg19_lincRNAsTranscripts_TCONS_l2_00009255 range=chr15:85112757-85114366 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009255 range=chr15:85112757-85114366 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 85112757	 85113563	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9020_PI429285431	1.5214173	A	2.2080543	A	0.621300448140341	0	lncRNA	10547-1_{1..1556}	lnc-KLLN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLLN-1:1	chr10	 89707608	 89709163	-	lnc-KLLN-1	lnc-KLLN-1:1	ENSG00000245981	ENST00000329958	PTEN	NA	chr10:89697608-89718694	inner
CUST_12750_PI429285431	0.99469787	A	0.8747428	A	1.0867010187575	0	lncRNA	14375-1_{1..898}	lnc-LPHN3-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LPHN3-2:4	chr4	 63027477	 63028374	+	lnc-LPHN3-2	lnc-LPHN3-2:4	XLOC_003555	linc-STAP1-9	NA	NA	NA	inter
CUST_12471_PI429285431	2.2441733	A	3.089122	A	0.556730605239973	0	lncRNA	14083-1_{1..321}	lnc-RAB11FIP2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB11FIP2-2:4	chr10	119586572	119586892	-	lnc-RAB11FIP2-2	lnc-RAB11FIP2-2:4	XLOC_008963	linc-PDZD8-2	NA	NA	NA	inter
CUST_51832_PI429285431	7.3300786	P	7.5278287	P	0.871909256381853	0	lncRNA	55387-1_{1..1363}	hg19_lincRNAsTranscripts_TCONS_l2_00013084 range=chr19:36815830-36822634 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013084 range=chr19:36815830-36822634 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 36815830	 36817192	-	NA	NA	NA	NA	ZFP14	NA	chr19:36825355-36832634	inter
CUST_27949_PI429285431	0.9098154	A	0.9261605	A	0.988734377793627	0	lncRNA	29553-1_{1..554}	n325196|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329973|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329973|-1.0320400|-0.2217058	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325196|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329973|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329973|-1.0320400|-0.2217058	chr2	106504790	106505343	-	NA	NA	NA	NA	NCK2	NA	chr2:106494790-106510730	inner
CUST_30867_PI429285431	3.9847512	P	3.3610132	P	1.5408623636727	0	lncRNA	32655-1_{1..407}	n336875|AY672104|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332082|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332082|1.7195200|-0.1895565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336875|AY672104|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332082|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332082|1.7195200|-0.1895565	chrX	 49645464	 49645870	+	NA	NA	NA	NA	USP27X	NA	chrX:49644470-49647169	inner
CUST_31571_PI429285431	0.8961233	A	0.905265	A	0.993683489974916	0	lncRNA	33328-1_{1..1123}	n338068|AL109674|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|455|NULL|-0.7509150|-0.1415256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338068|AL109674|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|455|NULL|-0.7509150|-0.1415256	chr15	 79252288	 79253410	-	NA	NA	NA	NA	RASGRF1	NA	chr15:79252289-79263391	inner
LNCA_21_P0002636	6.0133514	P	5.605649	P	1.32657146641202	0	lncRNA	TCONS_00005051	NA	NA	NA	NA	XLOC_001926	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001926), lincRNA [TCONS_00005051]"	chr2:292210-292151	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00005051	TCONS_00005051	chr2	   292151	   292210	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43155_PI429285431	0.89038026	A	0.9040688	A	0.990556697779825	0	lncRNA	47970-1_{1..256}	ENST00000593278 havana:sense_intronic chromosome:GRCh37:17:35337466:35337721:1 gene:ENSG00000267306 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000593278 havana:sense_intronic chromosome:GRCh37:17:35337466:35337721:1 gene:ENSG00000267306 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr17	 35337466	 35337721	+	ENSG00000267306	ENST00000593278	NA	NA	AATF	NA	chr17:35327466-35347721	inner
LNCA_21_P0009603	0.9095012	A	2.2969728	A	0.382234101225197	0	lncRNA	TCONS_00026600	NA	NA	NA	NA	XLOC_012626	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012626), lincRNA [TCONS_00026600]"	chr18:11490209-11503760	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_00026600	TCONS_00026600	chr18	 11490209	 11503760	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30634_PI429285431	5.0929685	P	4.8460555	P	1.18666523507021	0	lncRNA	32416-1_{1..562}	n335993|X74842|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323482|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323482|1.3607600|-0.2052975	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335993|X74842|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323482|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323482|1.3607600|-0.2052975	chr7	142012888	142013449	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009111	0.9087312	A	0.9310535	A	0.984646446990741	0	lncRNA	TCONS_00024886	NA	NA	NA	NA	XLOC_011785	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011785), lincRNA [TCONS_00024886]"	chr16:73802442-73802501	hs|16q22.3	Agilent_HUMAN_G3V2	TCONS_00024886	TCONS_00024886	chr16	 73802442	 73802501	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2607_PI429285431	4.1172385	P	2.960161	P	2.23005223020503	0	lncRNA	2594-1_{1..507}	"transcript_id ""ENST00000445974.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445974.1"" | genecode_v17"	chr6	113678205	113678711	-	ENSG00000223811.1	ENST00000445974.1	RP11-437J19.1	RP11-437J19.1-001	NA	NA	NA	inter
CUST_29823_PI429285431	0.902642	A	0.9049075	A	0.998430907377517	0	lncRNA	31586-1_{1..313}	n333544|D13084|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000100478|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000100478|1.7382200|-0.1168052	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333544|D13084|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000100478|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000100478|1.7382200|-0.1168052	chr7	142231578	142231890	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007161	0.9045988	A	0.9260177	A	0.985263215011724	0	lncRNA	ENST00000452629	NA	NA	NA	NA	XLOC_009565	NA	ENST00000452629	NA	NA	"BROAD Institute lincRNA (XLOC_009565), lincRNA [TCONS_00019174]"	chr11:116367675-116367616	hs|11q23.3	Agilent_HUMAN_G3V2	ENST00000452629	ENST00000452629	chr11	116367616	116367675	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3899_PI429285431	0.91851807	A	0.9675184	A	0.966605875964902	0	lncRNA	3868-1_{1..563}	"transcript_id ""ENST00000527727.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527727.1"" | genecode_v17"	chr11	 29467034	 29467596	+	ENSG00000255227.1	ENST00000527727.1	RP11-460B17.2	RP11-460B17.2-001	NA	NA	NA	inter
CUST_48910_PI429285431	4.5249825	P	5.1101065	P	0.666592042330377	0	lncRNA	52752-1_{1..1014}	hg19_lincRNAsTranscripts_TCONS_l2_00019491 range=chr3:125626358-125633319 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019491 range=chr3:125626358-125633319 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	125626358	125627371	-	NA	NA	NA	NA	NA	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-26.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20"	NA	inter
CUST_4791_PI429285431	0.90122133	A	0.91271627	A	0.992063972616655	0	lncRNA	4735-1_{1..453}	"transcript_id ""ENST00000553386.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553386.1"" | genecode_v17"	chr14	 44936161	 44936613	-	ENSG00000258487.1	ENST00000553386.1	RP11-99L13.1	RP11-99L13.1-001	NA	NA	NA	inter
LNCA_21_P0001295	0.9004724	A	0.9201953	A	0.986422149470593	0	lncRNA	TCONS_00000935	NA	NA	NA	NA	XLOC_000186	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000186), lincRNA [TCONS_00000935]"	chr1:50786997-50787056	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_00000935	TCONS_00000935	chr1	 50786997	 50787056	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_615_PI429285431	0.8958912	A	0.8994275	A	0.997551825305146	0	lncRNA	607-1_{1..197}	"transcript_id ""ENST00000422844.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422844.1"" | genecode_v17"	chr1	238439337	238439533	+	ENSG00000234464.1	ENST00000422844.1	RP11-136B18.2	RP11-136B18.2-001	NA	NA	NA	inter
CUST_42369_PI429285431	3.0612564	A	2.8666592	A	1.14440459858728	0	lncRNA	45046-1_{1..156}	ENST00000391040 ncrna:snoRNA chromosome:GRCh37:8:131175218:131175373:1 gene:ENSG00000212342 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391040 ncrna:snoRNA chromosome:GRCh37:8:131175218:131175373:1 gene:ENSG00000212342 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	131175218	131175373	+	ENSG00000212342	ENST00000391040	NA	NA	ASAP1	NA	chr8:131165218-131185373	inner
CUST_21023_PI429285431	2.0530257	A	2.8059652	A	0.593393282493793	0	lncRNA	22651-1_{1..1402}	lnc-AC074212.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC074212.3.1-1:1	chr19	 46272090	 46273491	+	lnc-AC074212.3.1-1	lnc-AC074212.3.1-1:1	ENSG00000259605.1	AC074212.5	SIX5	"hg19_refFlat_SIX5:range=chr19:46268759-462721025'pad=0,hg19_refFlat_SIX5:range=chr19:46268759-462721025'pad=0 3'pad=0 strand=- repeatMasking=none,-105.60chr19:46268043-46272497"	NA	inner
CUST_7727_PI429285431	4.822557	P	5.0098715	P	0.878238995845164	0	lncRNA	9358-1_{1..455}	lnc-TGFBRAP1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TGFBRAP1-5:1	chr2	105488704	105489158	-	lnc-TGFBRAP1-5	lnc-TGFBRAP1-5:1	ENSG00000229743	AC018730.3	NA	NA	NA	inter
LNCA_21_P0004469	6.3040233	P	6.551292	P	0.842489902285101	0	lncRNA	TCONS_00010555	NA	NA	NA	NA	XLOC_005082	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005082), lincRNA [TCONS_00010555]"	chr5:171222709-171222650	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00010555	TCONS_00010555	chr5	171222650	171222709	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26714_PI429285431	0.8975657	A	0.9116567	A	0.990280406646466	0	lncRNA	28210-1_{1..1106}	n1867|AF429305|NCRMSRNA|Homosapiens|NCRMS|NONCODEv2.0|n1867|NULL|-1.5906100|-0.3360603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n1867|AF429305|NCRMSRNA|Homosapiens|NCRMS|NONCODEv2.0|n1867|NULL|-1.5906100|-0.3360603	chr12	 97886238	 97887343	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_744_PI429285431	4.349052	P	4.514796	P	0.891468669125587	0	lncRNA	735-1_{1..1572}	"transcript_id ""ENST00000567540.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567540.1"" | genecode_v17"	chr2	 10179219	 10180790	-	ENSG00000260077.1	ENST00000567540.1	RP11-254F7.2	RP11-254F7.2-001	KLF11	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00chr2:10183682-10190790"	NA	inter
CUST_42340_PI429285431	0.9007701	A	0.89490646	A	1.00407263626872	0	lncRNA	44999-1_{1..71}	ENST00000516447 ncrna:snoRNA chromosome:GRCh37:9:86096182:86096252:1 gene:ENSG00000252256 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516447 ncrna:snoRNA chromosome:GRCh37:9:86096182:86096252:1 gene:ENSG00000252256 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	 86096182	 86096252	+	ENSG00000252256	ENST00000516447	NA	NA	FRMD3	NA	chr9:86086182-86106252	inner
CUST_35043_PI429285431	0.9090136	A	0.9089301	A	1.00005787946453	0	lncRNA	36454-1_{1..2184}	n341989|AK025670|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4470|NULL|-1.2395800|-0.3345497	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341989|AK025670|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4470|NULL|-1.2395800|-0.3345497	chr12	 96113017	 96115200	-	NA	NA	NA	NA	NTN4	NA	chr12:96103017-96125180	inner
CUST_395_PI429285431	0.89631575	A	0.9114047	A	0.989595640577912	0	lncRNA	387-1_{1..729}	"transcript_id ""ENST00000422129.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422129.2"" | genecode_v17"	chr1	143118704	143119432	-	ENSG00000232274.2	ENST00000422129.2	RP11-782C8.2	RP11-782C8.2-008	NA	"hg19_refFlat_ZNF717:range=chr3:75786029-758325135'pad=0,hg19_refFlat_ZNF717:range=chr3:75786029-758325135'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80"	NA	inter
LNCA_21_P0012560	1.8966283	A	1.3579627	A	1.4526283081302	0	lncRNA	ENST00000414895	NA	NA	NA	NA	XLOC_l2_010486	NA	ENST00000414895	THC2776142	NA	"BROAD Institute lincRNA (XLOC_l2_010486), lincRNA [TCONS_l2_00020300]"	chr3:192862342-192862283	hs|3q29	Agilent_HUMAN_G3V2	ENST00000414895	ENST00000414895	chr3	192862283	192862342	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12916_PI429285431	0.95092356	A	0.87927276	A	1.05091850663328	0	lncRNA	14544-1_{1..250}	lnc-AC015987.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC015987.1-3:1	chr7	135715676	135715925	+	lnc-AC015987.1-3	lnc-AC015987.1-3:1	XLOC_006269	linc-CHRM2-3	NA	NA	NA	inter
CUST_49284_PI429285431	0.89217436	A	0.89817095	A	0.99585210691947	0	lncRNA	53103-1_{1..450}	hg19_lincRNAsTranscripts_TCONS_l2_00022746 range=chr5:1543089-1547067 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022746 range=chr5:1543089-1547067 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	  1543089	  1543538	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00322357	7.8975263	P	7.9295964	P	0.978015950871974	0	lncRNA	BC044939	NA	BC044939	NA	Hs.399280	XLOC_012335	NA	NA	THC2495909	NA	"BROAD Institute lincRNA (XLOC_012335), lincRNA [TCONS_00025131]"	chr17:77896630-77896689	hs|17q25.3	Agilent_HUMAN_G3V2	BC044939	BC044939	chr17	 77896630	 77896689	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46153_PI429285431	0.9243994	A	0.9354521	A	0.992368123951012	0	lncRNA	50402-1_{1..903}	"gi|353731066|ref|NR_045382.1| Homo sapiens uncharacterized LOC100507066 (LOC100507066), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|353731066|ref|NR_045382.1| Homo sapiens uncharacterized LOC100507066 (LOC100507066), non-coding RNA"	Chr12	122880089	122880991	+	100507066	NR_045382.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003605	0.8747572	A	0.8791421	A	0.996965233170615	0	lncRNA	TCONS_00008058	NA	NA	NA	NA	XLOC_003523	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003523), lincRNA [TCONS_00008058]"	chr4:42253197-42253256	hs|4p13	Agilent_HUMAN_G3V2	TCONS_00008058	TCONS_00008058	chr4	 42253197	 42253256	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12050_PI429285431	0.89593196	A	1.097865	A	0.86938491003301	0	lncRNA	13636-1_{1..616}	lnc-MIS18A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MIS18A-3:1	chr21	 33393793	 33394408	-	lnc-MIS18A-3	lnc-MIS18A-3:1	XLOC_014052	linc-SFRS15-2	NA	NA	NA	inter
CUST_44597_PI429285431	4.910015	P	5.20117	P	0.817247520485147	0	lncRNA	49174-1_{1..3000}	"gi|293651596|ref|NR_033449.1| Homo sapiens transcription factor 7 (T-cell specific, HMG-box) (TCF7), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|293651596|ref|NR_033449.1| Homo sapiens transcription factor 7 (T-cell specific, HMG-box) (TCF7), transcript variant 6, non-coding RNA"	Chr5	133451350	133454349	+	6932	NR_033449.1	NA	NA	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40"	NA	inter
CUST_46057_PI429285431	9.078489	P	9.35588	P	0.82508176409639	0	lncRNA	50332-1_{1..1411}	"gi|221139753|ref|NR_026656.1| Homo sapiens uncharacterized LOC400043 (LOC400043), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|221139753|ref|NR_026656.1| Homo sapiens uncharacterized LOC400043 (LOC400043), non-coding RNA"	Chr12	 54519855	 54521265	+	400043	NR_026656.1	NA	NA	NA	NA	NA	inter
CUST_51922_PI429285431	1.267521	A	2.1314528	A	0.549453082271017	0	lncRNA	55462-1_{1..550}	hg19_lincRNAsTranscripts_TCONS_l2_00016421 range=chr20:1385807-1404632 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016421 range=chr20:1385807-1404632 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	  1385807	  1386356	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8408_PI429285431	0.88115346	A	0.8780452	A	1.00215680421872	0	lncRNA	9985-1_{1..1546}	lnc-TYMS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TYMS-1:1	chr18	   696886	   698431	+	lnc-TYMS-1	lnc-TYMS-1:1	ENSG00000215726	ENST00000508278	ENOSF1	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_ENOSF1:range=chr18:674305-7125065'pad=0,hg19_refFlat_ENOSF1:range=chr18:674305-7125065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ENOSF1:range=chr18:674305-7125875'pad=0,hg19_refFlat_ENOSF1:range=chr18:674305-7125875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr18:686886-708160"	NA	inner
LNCA_21_P0007335	0.87429255	A	0.8732501	A	1.00072283239589	0	lncRNA	TCONS_00019608	NA	NA	NA	NA	XLOC_009409	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009409), lincRNA [TCONS_00019608]"	chr11:33025260-33025201	hs|11p13	Agilent_HUMAN_G3V2	TCONS_00019608	TCONS_00019608	chr11	 33025201	 33025260	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15223_PI429285431	4.852642	P	4.4229474	P	1.34694841501446	0	lncRNA	16893-1_{1..339}	lnc-ANKRD50-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD50-2:1	chr4	125298864	125299202	-	lnc-ANKRD50-2	lnc-ANKRD50-2:1	XLOC_004063	linc-NUDT6-4	NA	NA	NA	inter
CUST_33288_PI429285431	0.8787853	A	0.87427473	A	1.00313138144209	0	lncRNA	34871-1_{1..1186}	n339999|AK130834|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2452|NULL|-1.0235700|-0.3435078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339999|AK130834|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2452|NULL|-1.0235700|-0.3435078	chr10	 26823286	 26824471	+	NA	NA	NA	NA	APBB1IP	NA	chr10:26813286-26834417	inner
CUST_8570_PI429285431	3.0766628	A	3.1743333	P	0.934540764141316	0	lncRNA	10129-1_{1..3000}	lnc-ZNF71-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF71-2:1	chr19	 57324085	 57327084	+	lnc-ZNF71-2	lnc-ZNF71-2:1	ENSG00000248561	ENST00000513382	ZIM2	"hg19_refFlat_PEG3:range=chr19:57325043-573356455'pad=0,hg19_refFlat_PEG3:range=chr19:57325043-573356455'pad=0 3'pad=0 strand=- repeatMasking=none,-95.30;hg19_refFlat_PEG3:range=chr19:57325043-573360235'pad=0,hg19_refFlat_PEG3:range=chr19:57325043-573360235'pad=0 3'pad=0 strand=- repeatMasking=none,-95.30chr19:57314085-57337470"	NA	inner
CUST_12603_PI429285431	2.367327	A	1.7416894	A	1.54289255710762	0	lncRNA	14216-1_{1..751}	lnc-RP11-204N11.1.1-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-204N11.1.1-3:6	chr14	 98444314	 98445064	-	lnc-RP11-204N11.1.1-3	lnc-RP11-204N11.1.1-3:6	XLOC_011117	linc-ATG2B-2	NA	NA	NA	inter
LNCA_21_P0013200	0.8751066	A	0.87503445	A	1.00005001181963	0	lncRNA	TCONS_l2_00025889	NA	NA	NA	NA	XLOC_l2_013416	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013416), lincRNA [TCONS_l2_00025889]"	chr7:56666352-56666411	hs|7p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00025889	TCONS_l2_00025889	chr7	 56666352	 56666411	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6162_PI429285431	0.89166456	A	0.8998998	A	0.99430802762171	0	lncRNA	6088-1_{1..547}	"transcript_id ""ENST00000600183.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600183.1"" | genecode_v17"	chr18	 39101162	 39101708	-	ENSG00000267313.2	ENST00000600183.1	RP11-142I20.1	RP11-142I20.1-009	NA	NA	NA	inter
CUST_16158_PI429285431	0.87631625	A	0.87498856	A	1.00092070817194	0	lncRNA	17864-1_{1..465}	lnc-ZNF32-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF32-4:1	chr10	 44409598	 44410062	-	lnc-ZNF32-4	lnc-ZNF32-4:1	XLOC_008793	linc-ZNF32-3	NA	NA	NA	inter
CUST_20678_PI429285431	0.8861138	A	0.89591885	A	0.993226700142678	0	lncRNA	22315-1_{1..444}	lnc-HADH-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HADH-1:6	chr4	109097446	109097889	+	lnc-HADH-1	lnc-HADH-1:6	ENSG00000232021.2	LEF1-AS1	LEF1	NA	chr4:109087446-109090112	inter
CUST_16261_PI429285431	0.8807998	A	0.8954475	A	0.989898355876146	0	lncRNA	17964-1_{1..1164}	lnc-LYPLAL1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYPLAL1-3:2	chr1	219097803	219098966	+	lnc-LYPLAL1-3	lnc-LYPLAL1-3:2	XLOC_000565	linc-LYPLAL1	NA	NA	NA	inter
CUST_6300_PI429285431	10.277834	P	10.388224	P	0.926337613601385	0	lncRNA	6224-1_{1..80}	"transcript_id ""ENST00000592276.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592276.1"" | genecode_v17"	chr19	  2250638	  2250717	+	ENSG00000267021.1	ENST00000592276.1	MIR4321	MIR4321-001	SF3A2	NA	chr19:2240638-2248678	inter
CUST_35391_PI429285431	0.9140738	A	0.9208906	A	0.995286099766804	0	lncRNA	36799-1_{1..3000}	n342447|BC036114|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4940|NULL|-1.2120200|-0.4006856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342447|BC036114|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4940|NULL|-1.2120200|-0.4006856	chr2	132394602	132397601	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9174_PI429285431	1.9147345	A	2.21276	A	0.813364821575984	0	lncRNA	10691-1_{1..906}	lnc-LCE5A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LCE5A-2:1	chr1	152313563	152314468	+	lnc-LCE5A-2	lnc-LCE5A-2:1	ENSG00000237975	RP1-14N1.2	FLG2	NA	chr1:152321213-152323586	inter
CUST_14171_PI429285431	1.0285913	A	1.1091892	A	0.945665650735	0	lncRNA	15824-1_{1..383}	lnc-AC110373.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC110373.1-4:1	chr4	120610321	120610703	+	lnc-AC110373.1-4	lnc-AC110373.1-4:1	XLOC_003669	linc-EXOSC9-5	NA	NA	NA	inter
CUST_47922_PI429285431	1.3947686	A	1.3788643	A	1.01108500912653	0	lncRNA	51813-1_{1..2347}	"gi|410172152|ref|XR_171643.1| PREDICTED: Homo sapiens uncharacterized LOC100128364 (LOC100128364), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172152|ref|XR_171643.1| PREDICTED: Homo sapiens uncharacterized LOC100128364 (LOC100128364), misc_RNA"	NA	NA	NA	NA	NA	XR_171643.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014565	5.3137865	P	4.084983	P	2.34372532220166	0	lncRNA	XR_110322	XR_110322	XR_110322	NA	NA	LOC100507484	uncharacterized LOC100507484	ENST00000552060	THC2753319	NA	"PREDICTED: Homo sapiens hypothetical LOC100507484 (LOC100507484), miscRNA [XR_110322]"	chr12:77613445-77613386	hs|12q21.2	Agilent_HUMAN_G3V2	XR_110322	XR_110322	chr12	 77613386	 77613445	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28649_PI429285431	0.89422846	A	0.8956521	A	0.999013694667035	0	lncRNA	30341-1_{1..514}	n326028|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047412|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047412|-0.4108970|-0.2963083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326028|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047412|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047412|-0.4108970|-0.2963083	chr10	 30609020	 30609533	-	NA	NA	NA	NA	MTPAP	NA	chr10:30599020-30619845	inner
CUST_9140_PI429285431	0.89382446	A	1.6651101	A	0.585895128647872	0	lncRNA	10658-1_{1..2845}	lnc-AGMAT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AGMAT-1:1	chr1	 15929584	 15932428	-	lnc-AGMAT-1	lnc-AGMAT-1:1	ENSG00000237301	RP4-680D5.2	DDI2	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50chr1:15931023-15940121"	NA	inter
CUST_50501_PI429285431	0.90169775	A	0.923792	A	0.984802104537385	0	lncRNA	54197-1_{1..892}	hg19_lincRNAsTranscripts_TCONS_l2_00030573 range=chrX:105708482-105711579 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030573 range=chrX:105708482-105711579 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	105708482	105709373	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004812	7.6186166	P	6.931471	P	1.61009476139588	0	lncRNA	TCONS_00011631	NA	NA	NA	NA	XLOC_005119	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005119), lincRNA [TCONS_00011631]"	chr6:237103-237162	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_00011631	TCONS_00011631	chr6	   237103	   237162	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6281_PI429285431	3.6416087	P	3.7966042	P	0.898135174308952	0	lncRNA	6205-1_{1..179}	"transcript_id ""ENST00000578030.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578030.1"" | genecode_v17"	chr18	 76668629	 76668807	-	ENSG00000266586.1	ENST00000578030.1	CTD-2382H12.2	CTD-2382H12.2-001	NA	NA	NA	inter
CUST_48391_PI429285431	6.0734706	P	5.8038955	P	1.20545274758651	0	lncRNA	52244-1_{1..909}	hg19_lincRNAsTranscripts_TCONS_l2_00001459 range=chr1:116966478-117017440 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001459 range=chr1:116966478-117017440 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	116966478	116967386	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44104_PI429285431	3.5569515	P	3.1464553	A	1.32914288040222	0	lncRNA	48769-1_{1..2190}	"gi|194306655|ref|NR_024022.1| Homo sapiens SET domain and mariner transposase fusion gene (SETMAR), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|194306655|ref|NR_024022.1| Homo sapiens SET domain and mariner transposase fusion gene (SETMAR), transcript variant 3, non-coding RNA"	Chr3	  4345297	  4347486	+	6419	NR_024022.1	NA	NA	NA	NA	NA	inter
CUST_9202_PI429285431	0.90394354	A	0.9231055	A	0.986805758763454	0	lncRNA	10714-1_{1..964}	lnc-ZMAT3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZMAT3-2:2	chr3	178578082	178579045	-	lnc-ZMAT3-2	lnc-ZMAT3-2:2	ENSG00000237978	RP11-385J1.2	NA	NA	NA	inter
LNCA_21_P0002325	0.90137297	A	0.92151827	A	0.986133381773044	0	lncRNA	ENST00000428474	NA	AK125001	NA	Hs.580074	XLOC_001776	NA	ENST00000428474	THC2518790	NA	"BROAD Institute lincRNA (XLOC_001776), lincRNA [TCONS_00003960]"	chr2:182227488-182227547	hs|2q31.3	Agilent_HUMAN_G3V2	ENST00000428474	ENST00000428474	chr2	182227488	182227547	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12987_PI429285431	3.331692	P	3.19608	A	1.09855873024434	0	lncRNA	14614-1_{1..1541}	lnc-PTP4A3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTP4A3-3:1	chr8	142337063	142338603	+	lnc-PTP4A3-3	lnc-PTP4A3-3:1	XLOC_006946	linc-PTP4A3-3	NA	NA	NA	inter
LNCA_21_P0014691	3.1138463	P	2.7602773	A	1.27771759260409	0	lncRNA	XR_111695	XR_111695	XR_111695	NA	Hs.560505	LOC100287808	uncharacterized LOC100287808	NA	THC2652848	NA	"PREDICTED: Homo sapiens hypothetical LOC100287808 (LOC100287808), miscRNA [XR_111695]"	chr17:36906997-36907056	hs|17q12	Agilent_HUMAN_G3V2	XR_111695	XR_111695	chr17	 36906997	 36907056	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33043_PI429285431	5.777202	P	6.104642	P	0.796949382056787	0	lncRNA	34656-1_{1..1750}	n339732|AK127405|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2177|NULL|-1.2013600|-0.3986962	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339732|AK127405|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2177|NULL|-1.2013600|-0.3986962	chr3	187100888	187102637	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45146_PI429285431	3.6131918	P	3.4833956	A	1.09413912853493	0	lncRNA	49626-1_{1..3000}	"gi|393186604|ref|NR_047662.2| Homo sapiens uncharacterized LOC729732 (LOC729732), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|393186604|ref|NR_047662.2| Homo sapiens uncharacterized LOC729732 (LOC729732), non-coding RNA"	Chr8	 12394588	 12397587	-	729732	NR_047662.2	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10"	NA	inter
CUST_25862_PI429285431	0.89364827	A	0.90709686	A	0.990721461530915	0	lncRNA	27383-1_{1..677}	lnc-PLEKHA3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLEKHA3-4:1	chr2	179628913	179629589	+	lnc-PLEKHA3-4	lnc-PLEKHA3-4:1	ENSG00000263580.1	RP11-88L24.2	TTN	"hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_TTN:range=chr2:179610312-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179610312-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30chr2:179618913-179639339"	NA	inner
CUST_44118_PI429285431	14.109804	P	14.449904	P	0.789986552270438	0	lncRNA	48784-1_{1..1621}	"gi|210032642|ref|NR_024272.1| Homo sapiens SEC13 homolog (S. cerevisiae) (SEC13), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|210032642|ref|NR_024272.1| Homo sapiens SEC13 homolog (S. cerevisiae) (SEC13), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_024272.1	NA	NA	NA	NA	NA	Unknown
CUST_33405_PI429285431	3.5423706	P	3.289023	P	1.19196973073451	0	lncRNA	34984-1_{1..370}	n340128|AF264625|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2587|NULL|-1.0602800|-0.3161274	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340128|AF264625|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2587|NULL|-1.0602800|-0.3161274	chr10	103358770	103359139	+	NA	NA	NA	NA	DPCD	NA	chr10:103348770-103369114	inner
LNCA_21_P0014216	1.0462223	A	3.5110521	P	0.181139137704139	0	lncRNA	XR_108890	XR_108890	XR_108890	NA	Hs.445172	LOC100507162	uncharacterized LOC100507162	NA	THC2660173	NA	"PREDICTED: Homo sapiens hypothetical LOC100507162 (LOC100507162), miscRNA [XR_108890]"	chr8:134676063-134676004	hs|8q24.22	Agilent_HUMAN_G3V2	XR_108890	XR_108890	chr8	134676004	134676063	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33789_PI429285431	1.959931	A	1.5321577	A	1.34515581888238	0	lncRNA	35342-1_{1..392}	n340577|AF130046|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3039|NULL|-1.4648000|-0.5512151	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340577|AF130046|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3039|NULL|-1.4648000|-0.5512151	chr5	108670481	108670872	+	NA	NA	NA	NA	PJA2	NA	chr5:108670410-108680873	inner
CUST_23207_PI429285431	4.397001	P	5.119088	P	0.606219851065064	0	lncRNA	24779-1_{1..493}	lnc-SARM1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SARM1-2:1	chr17	 26733534	 26734026	+	lnc-SARM1-2	lnc-SARM1-2:1	ENSG00000265254.1	CTD-2350C19.2	SARM1	"hg19_refFlat_SLC46A1:range=chr17:26726672-267331325'pad=0,hg19_refFlat_SLC46A1:range=chr17:26726672-267331325'pad=0 3'pad=0 strand=- repeatMasking=none,-103.80chr17:26723534-26728065"	NA	inter
CUST_15884_PI429285431	0.9030233	A	0.9108233	A	0.994608041068293	0	lncRNA	17575-1_{1..730}	lnc-EXT1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXT1-4:1	chr8	118531278	118532007	-	lnc-EXT1-4	lnc-EXT1-4:1	XLOC_007188	linc-RAD21-1	MED30	NA	chr8:118532965-118541528	inter
CUST_10933_PI429285431	8.8796015	P	8.722374	P	1.11514205271074	0	lncRNA	12474-1_{1..346}	lnc-DERA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DERA-1:1	chr12	 16573837	 16574182	+	lnc-DERA-1	lnc-DERA-1:1	XLOC_009677	linc-PIK3C2G-2	NA	NA	NA	inter
CUST_49153_PI429285431	1.7910483	A	1.4124932	A	1.30003917710964	0	lncRNA	52979-1_{1..303}	hg19_lincRNAsTranscripts_TCONS_l2_00021279 range=chr4:123652771-123653534 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021279 range=chr4:123652771-123653534 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	123652771	123653073	-	NA	NA	NA	NA	BBS12	NA	chr4:123653857-123663534	inter
CUST_32902_PI429285431	1.5912468	A	2.5388954	A	0.518476821525704	0	lncRNA	34527-1_{1..1563}	n339570|AY007089|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2013|NULL|-1.1008400|-0.3894955	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339570|AY007089|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2013|NULL|-1.1008400|-0.3894955	chr20	  6407378	  6408940	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-60.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_4294_PI429285431	0.89706933	A	0.8909073	A	1.00428032826944	0	lncRNA	4249-1_{1..776}	"transcript_id ""ENST00000537298.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537298.1"" | genecode_v17"	chr12	 65952208	 65952983	-	ENSG00000250748.2	ENST00000537298.1	RP11-230G5.2	RP11-230G5.2-006	NA	NA	NA	inter
CUST_43618_PI429285431	7.508263	P	7.5538864	P	0.968871069575573	0	lncRNA	48380-1_{1..3000}	"gi|387849025|ref|NR_048578.1| Homo sapiens ADAM metallopeptidase domain 15 (ADAM15), transcript variant 11, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387849025|ref|NR_048578.1| Homo sapiens ADAM metallopeptidase domain 15 (ADAM15), transcript variant 11, non-coding RNA"	Chr1	155023748	155026747	+	8751	NR_048578.1	NA	NA	NA	NA	NA	inter
CUST_14792_PI429285431	5.9175296	P	6.233057	P	0.803557184000253	0	lncRNA	16453-1_{1..528}	lnc-PTP4A3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTP4A3-1:1	chr8	142392180	142392707	+	lnc-PTP4A3-1	lnc-PTP4A3-1:1	XLOC_006948	linc-PTP4A3-1	NA	NA	NA	inter
LNCA_21_P0013223	2.722316	A	0.88218933	A	3.58041463372984	0	lncRNA	TCONS_l2_00025959	NA	NA	NA	NA	XLOC_l2_013457	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013457), lincRNA [TCONS_l2_00025959]"	chr7:64563622-64563681	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025959	TCONS_l2_00025959	chr7	 64563622	 64563681	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38837_PI429285431	4.836131	P	2.7841084	A	4.14686936480234	0	lncRNA	39828-2_{3001..5701}	n384643|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jqc.1||1.8498900|-0.3636335	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384643|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jqc.1||1.8498900|-0.3636335	chr5	 54827669	 54830369	-	NA	NA	NA	NA	PPAP2A	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30chr5:54814669-54830873"	NA	inner
CUST_28601_PI429285431	4.514452	P	4.740442	P	0.855008104336002	0	lncRNA	30282-1_{1..477}	n325963|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048153|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048153|-1.2449800|-0.4087583	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325963|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048153|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048153|-1.2449800|-0.4087583	chr10	 60429391	 60429867	+	NA	NA	NA	NA	BICC1	NA	chr10:60419391-60441309	inner
CUST_6957_PI429285431	2.2431152	A	1.8318696	A	1.32983347570476	0	lncRNA	6905-1_{1..509}	"transcript_id ""ENST00000447149.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447149.1"" | genecode_v17"	chr22	 27299255	 27299763	+	ENSG00000235271.1	ENST00000447149.1	RP1-90L6.3	RP1-90L6.3-002	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_487_PI429285431	5.4711695	P	5.997631	P	0.694255448770908	0	lncRNA	478-1_{1..775}	"transcript_id ""ENST00000412357.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412357.1"" | genecode_v17"	chr1	175172364	175173138	-	ENSG00000230687.1	ENST00000412357.1	RP5-1114G22.2	RP5-1114G22.2-001	NA	NA	NA	inter
CUST_33018_PI429285431	3.7627592	P	1.2697443	A	5.62953164220174	0	lncRNA	34634-1_{1..1712}	n339701|AK021510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2146|NULL|1.2857700|-0.4677131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339701|AK021510|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2146|NULL|1.2857700|-0.4677131	chr3	178953577	178955288	+	NA	NA	NA	NA	PIK3CA	NA	chr3:178943577-178952500	inter
CUST_51660_PI429285431	10.095509	P	9.465458	P	1.54761970171528	0	lncRNA	55229-1_{1..1013}	hg19_lincRNAsTranscripts_TCONS_l2_00011413 range=chr17:62964167-62971641 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011413 range=chr17:62964167-62971641 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 62964167	 62965179	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44551_PI429285431	0.906587	A	0.91562593	A	0.993754277276967	0	lncRNA	49136-1_{1..357}	"gi|397139096|ref|XR_158790.1| PREDICTED: Homo sapiens uncharacterized LOC100509780 (LOC100509780), partial misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139096|ref|XR_158790.1| PREDICTED: Homo sapiens uncharacterized LOC100509780 (LOC100509780), partial misc_RNA"	NA	NA	NA	NA	NA	XR_158790.1	NA	NA	NA	NA	NA	Unknown
CUST_35694_PI429285431	4.7000775	P	4.3688145	P	1.2581143022865	0	lncRNA	37113-1_{1..2288}	n342855|AK095541|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5359|NULL|-1.1051100|-0.2283746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342855|AK095541|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5359|NULL|-1.1051100|-0.2283746	chr9	 33025347	 33027634	-	NA	NA	NA	NA	DNAJA1	"hg19_refFlat_DNAJA1:range=chr9:33026483-330389015'pad=0,hg19_refFlat_DNAJA1:range=chr9:33026483-330389015'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.90chr9:33025209-33039062"	NA	inner
CUST_42221_PI429285431	5.3422775	P	5.544851	P	0.868999046999146	0	lncRNA	44328-1_{1..86}	ENST00000580268 ncrna:miRNA chromosome:GRCh37:19:32991762:32991847:-1 gene:ENSG00000263780 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580268 ncrna:miRNA chromosome:GRCh37:19:32991762:32991847:-1 gene:ENSG00000263780 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 32991762	 32991847	-	ENSG00000263780	ENST00000580268	NA	NA	NA	NA	NA	inter
LNCA_21_P0005458	0.873329	A	1.1947017	A	0.80030803560871	0	lncRNA	TCONS_00013661	NA	NA	NA	NA	XLOC_006322	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006322), lincRNA [TCONS_00013661]"	chr7:158813495-158813554	hs|7q36.3	Agilent_HUMAN_G3V2	TCONS_00013661	TCONS_00013661	chr7	158813495	158813554	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29301_PI429285431	2.3621497	A	2.8568563	P	0.709705995895121	0	lncRNA	31052-1_{1..316}	n332466|EF624226|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000469608|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000469608|1.1145300|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332466|EF624226|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000469608|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000469608|1.1145300|-1.0000000	chr15	 22472879	 22473194	-	NA	NA	NA	NA	LOC642131	NA	chr15:22471454-22473353	inter
CUST_42075_PI429285431	1.036154	A	0.90242606	A	1.09712502484214	0	lncRNA	43996-1_{1..78}	ENST00000584305 ncrna:miRNA chromosome:GRCh37:10:14425199:14425276:-1 gene:ENSG00000266321 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584305 ncrna:miRNA chromosome:GRCh37:10:14425199:14425276:-1 gene:ENSG00000266321 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 14425199	 14425276	-	ENSG00000266321	ENST00000584305	NA	NA	NA	NA	NA	inter
CUST_30395_PI429285431	2.6800132	A	2.6187806	A	1.04335679624868	0	lncRNA	32175-1_{1..642}	n335513|BC062661|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000260552|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000260552|3.4366800|-0.1248478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335513|BC062661|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000260552|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000260552|3.4366800|-0.1248478	chr4	 17885744	 17886385	-	NA	NA	NA	NA	LCORL	NA	chr4:17875744-17896386	inner
CUST_46679_PI429285431	8.471645	P	8.845913	P	0.771496758322055	0	lncRNA	50846-2_{3001..6000}	"gi|224586819|ref|NR_027265.1| Homo sapiens golgi glycoprotein 1 (GLG1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224586819|ref|NR_027265.1| Homo sapiens golgi glycoprotein 1 (GLG1), transcript variant 5, non-coding RNA"	Chr16	 74484325	 74487324	-	2734	NR_027265.1	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50"	NA	inter
CUST_40385_PI429285431	8.733024	P	8.793196	P	0.959149761412558	0	lncRNA	41179-1_{1..2377}	n409233|NR_033396|lncRNA|Homosapiens||RefGeneNoncode|NR_033396||8.9396100|-0.1088399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409233|NR_033396|lncRNA|Homosapiens||RefGeneNoncode|NR_033396||8.9396100|-0.1088399	chr11	 64981310	 64983686	+	NA	NA	NA	NA	CAPN1	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0,hg19_refFlat_LOC339862:range=chr3:18004178-183085355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10chr11:64971310-64979477"	NA	inter
LNCA_21_P0014716	8.199106	P	6.929186	P	2.41148193072182	0	lncRNA	ENST00000536618	XR_112602	XR_112602	NA	NA	LRCH3	leucine-rich repeats and calponin homology (CH) domain containing 3	ENST00000536618	THC2510252	GO:0005576	"PREDICTED: Homo sapiens hypothetical LOC100509367 (LOC100509367), miscRNA [XR_112602]"	chr3:197612641-197612700	hs|3q29	Agilent_HUMAN_G3V2	ENST00000536618	ENST00000536618	chr3	197612641	197612700	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37526_PI429285431	4.293613	P	4.478032	P	0.880003398230578	0	lncRNA	38630-1_{1..731}	n346000|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1549|NULL|-1.2629800|-0.0629342	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346000|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1549|NULL|-1.2629800|-0.0629342	chr8	145576899	145577629	-	NA	NA	NA	NA	FBXL6	NA	chr8:145579091-145582132	inter
LNCA_21_P0011508	3.4113479	P	3.4196181	P	0.994283933418506	0	lncRNA	TCONS_l2_00010508	NA	NA	NA	NA	XLOC_l2_005622	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005622), lincRNA [TCONS_l2_00010508]"	chr17:2673647-2673706	hs|17p13.3	Agilent_HUMAN_G3V2	TCONS_l2_00010508	TCONS_l2_00010508	chr17	  2673647	  2673706	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24379_PI429285431	1.861093	A	1.152601	A	1.63409516008677	0	lncRNA	25932-1_{1..801}	lnc-HBZ-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HBZ-1:1	chr16	   177006	   177806	+	lnc-HBZ-1	lnc-HBZ-1:1	ENSG00000228779.1	Z69666.2	NPRL3	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-63.50;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60chr16:167006-187218"	NA	inner
CUST_43604_PI429285431	7.7345047	P	7.7966223	P	0.957857136169883	0	lncRNA	48367-1_{1..961}	"gi|374088102|ref|NR_046137.1| Homo sapiens family with sequence similarity 91, member A2 (FAM91A2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374088102|ref|NR_046137.1| Homo sapiens family with sequence similarity 91, member A2 (FAM91A2), transcript variant 3, non-coding RNA"	Chr1	149576262	149577222	+	57234	NR_046137.1	NA	NA	NA	NA	NA	inter
CUST_46503_PI429285431	2.3765805	A	1.5572445	A	1.76459365190773	0	lncRNA	50697-1_{1..2501}	"gi|338827654|ref|NR_040066.1| Homo sapiens LOXL1 antisense RNA 1 (LOXL1-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338827654|ref|NR_040066.1| Homo sapiens LOXL1 antisense RNA 1 (LOXL1-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NR_040066.1	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-63.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOXL1:range=chr15:74219125-742441785'pad=0,hg19_refFlat_LOXL1:range=chr15:74219125-742441785'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	Unknown
LNCA_21_P0012350	2.3466146	A	2.167315	A	1.13233402598772	0	lncRNA	XR_109751	XR_109751	XR_109751	NA	Hs.542766	LOC388882	uncharacterized LOC388882	NA	THC2488554	NA	"PREDICTED: Homo sapiens hypothetical LOC388882 (LOC388882), miscRNA [XR_109751]"	chr22:23811561-23809482	hs|22q11.23	Agilent_HUMAN_G3V2	XR_109751	XR_109751	chr22	 23809482	 23811561	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48870_PI429285431	1.397168	A	1.2116963	A	1.13718872487023	0	lncRNA	52706-1_{1..504}	hg19_lincRNAsTranscripts_TCONS_l2_00018490 range=chr3:30560407-30568660 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018490 range=chr3:30560407-30568660 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	 30560407	 30560910	+	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10"	NA	inter
CUST_32581_PI429285431	0.89451426	A	0.8999891	A	0.996212321509091	0	lncRNA	34244-1_{1..501}	n339200|AF085999|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1632|NULL|-0.2764430|-0.2982254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339200|AF085999|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1632|NULL|-0.2764430|-0.2982254	chr16	 47563100	 47563600	+	NA	NA	NA	NA	PHKB	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80chr16:47553100-47573827"	NA	inner
LNCA_21_P0012167	2.4466667	A	4.097625	P	0.318428572633678	0	lncRNA	TCONS_l2_00016966	NA	NA	NA	NA	XLOC_l2_008976	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008976), lincRNA [TCONS_l2_00016966]"	chr21:14724847-14724906	hs|21q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00016966	TCONS_l2_00016966	chr21	 14724847	 14724906	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48111_PI429285431	0.8865289	A	1.1533238	A	0.831164015200437	0	lncRNA	51984-1_{1..2879}	"gi|397138519|ref|XR_159518.1| PREDICTED: Homo sapiens uncharacterized LOC100996870 (LOC100996870), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397138519|ref|XR_159518.1| PREDICTED: Homo sapiens uncharacterized LOC100996870 (LOC100996870), misc_RNA"	NA	NA	NA	NA	NA	XR_159518.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002410	0.902877	A	0.9243352	A	0.98523637613319	0	lncRNA	TCONS_00004165	NA	NA	NA	NA	XLOC_002010	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002010), lincRNA [TCONS_00004165]"	chr2:20724968-20724909	hs|2p24.1	Agilent_HUMAN_G3V2	TCONS_00004165	TCONS_00004165	chr2	 20724909	 20724968	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44472_PI429285431	7.302606	P	7.448295	P	0.903947568617783	0	lncRNA	49076-1_{1..944}	"gi|380420344|ref|NR_046440.1| Homo sapiens MAFF interacting protein (pseudogene) (MAFIP), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|380420344|ref|NR_046440.1| Homo sapiens MAFF interacting protein (pseudogene) (MAFIP), transcript variant 2, non-coding RNA"	NT_113888.1	    53589	    54532	-	727764	NR_046440.1	NA	NA	NA	NA	NA	Unknown
CUST_44974_PI429285431	6.9861245	P	6.8438187	P	1.10366765351102	0	lncRNA	49485-1_{1..1993}	"gi|341865582|ref|NR_040582.1| Homo sapiens stromal antigen 3-like 3 (STAG3L3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|341865582|ref|NR_040582.1| Homo sapiens stromal antigen 3-like 3 (STAG3L3), non-coding RNA"	NW_003871064.1	   526531	   528523	-	442578	NR_040582.2	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_LOC100289561:range=chr7:102006509-1020209875'pad=0,hg19_refFlat_LOC100289561:range=chr7:102006509-1020209875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20"	NA	Unknown
LNCA_21_P0011273	0.9069906	A	0.92920554	A	0.984719723444173	0	lncRNA	TCONS_l2_00008273	NA	NA	NA	NA	XLOC_l2_004540	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004540), lincRNA [TCONS_l2_00008273]"	chr14:104756149-104756090	hs|14q32.33	Agilent_HUMAN_G3V2	TCONS_l2_00008273	TCONS_l2_00008273	chr14	104756090	104756149	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16483_PI429285431	9.808093	P	9.46644	P	1.26720769395719	0	lncRNA	18181-1_{1..515}	lnc-DISP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DISP1-3:1	chr1	223321230	223321744	+	lnc-DISP1-3	lnc-DISP1-3:1	XLOC_000578	linc-C1orf65-2	TLR5	NA	chr1:223311230-223316624	inter
LNCA_21_P0004117	0.90850484	A	0.9307374	A	0.984707696886181	0	lncRNA	ENST00000506492	NA	NA	NA	NA	XLOC_004765	NA	ENST00000506492	THC2721945	NA	"BROAD Institute lincRNA (XLOC_004765), lincRNA [TCONS_00009626]"	chr5:29381992-29380406	hs|5p13.3	Agilent_HUMAN_G3V2	ENST00000506492	ENST00000506492	chr5	 29380406	 29381992	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12386_PI429285431	4.7364926	P	4.3300943	P	1.32537287617512	0	lncRNA	13999-1_{1..509}	lnc-SLC13A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC13A1-1:2	chr7	122743580	122744088	-	lnc-SLC13A1-1	lnc-SLC13A1-1:2	XLOC_006586	linc-TAS2R16	SLC13A1	NA	chr7:122753588-122753643	inter
CUST_39093_PI429285431	0.8950103	A	0.90382975	A	0.993905470546593	0	lncRNA	40069-1_{1..597}	n385643|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azl.1||-0.9832090|-0.2648988	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385643|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azl.1||-0.9832090|-0.2648988	chr9	102117621	102118217	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49043_PI429285431	0.9844387	A	0.9168256	A	1.04798139159956	0	lncRNA	52871-1_{1..1006}	hg19_lincRNAsTranscripts_TCONS_l2_00020810 range=chr4:148499307-148515721 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020810 range=chr4:148499307-148515721 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	148499307	148500312	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36986_PI429285431	4.5311017	P	4.1115837	P	1.33748063194467	0	lncRNA	38131-1_{1..1481}	n345447|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_996|NULL|-1.3038800|-0.3960777	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345447|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_996|NULL|-1.3038800|-0.3960777	chr1	 86092997	 86094477	+	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30"	NA	inter
CUST_43525_PI429285431	8.690784	P	7.702037	P	1.98446071144867	0	lncRNA	48310-1_{1..824}	"gi|336594617|ref|NR_038914.1| Homo sapiens uncharacterized LOC100128787 (LOC100128787), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|336594617|ref|NR_038914.1| Homo sapiens uncharacterized LOC100128787 (LOC100128787), non-coding RNA"	Chr1	101092605	101093428	-	100128787	NR_038914.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014099	5.1811457	P	3.7522264	P	2.6924495268527	0	lncRNA	XR_108428	XR_108428	XR_108428	NA	NA	LOC100507554	uncharacterized LOC100507554	ENST00000438978	THC2652754	NA	"PREDICTED: Homo sapiens hypothetical LOC100507554 (LOC100507554), miscRNA [XR_108428]"	chr2:217351658-217351599	hs|2q35	Agilent_HUMAN_G3V2	XR_108428	XR_108428	chr2	217351599	217351658	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_665_PI429285431	1.2344351	A	1.1530464	A	1.05803598795129	0	lncRNA	658-1_{1..1475}	"transcript_id ""ENST00000425949.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425949.1"" | genecode_v17"	chr2	  4007241	  4008715	-	ENSG00000237401.2	ENST00000425949.1	AC107070.1	AC107070.1-001	NA	NA	NA	inter
CUST_40344_PI429285431	1.2632023	A	0.92731035	A	1.26215749985059	0	lncRNA	41148-1_{1..2363}	n409063|NR_033122|lncRNA|Homosapiens||RefGeneNoncode|NR_033122||5.3399900|-0.1450682	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409063|NR_033122|lncRNA|Homosapiens||RefGeneNoncode|NR_033122||5.3399900|-0.1450682	chr11	119056165	119058527	+	NA	NA	NA	NA	CCDC153	NA	chr11:119060963-119066584	inner
CUST_1280_PI429285431	5.968607	P	5.9335938	P	1.02456619730217	0	lncRNA	1271-1_{1..561}	"transcript_id ""ENST00000446593.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446593.1"" | genecode_v17"	chr2	242989846	242990406	-	ENSG00000232002.1	ENST00000446593.1	AC093642.6	AC093642.6-001	NA	NA	NA	inter
CUST_39090_PI429285431	0.9241882	A	1.8398421	A	0.530103547353422	0	lncRNA	40066-1_{1..1839}	n385639|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004axt.1||0.5924410|-0.3599635	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385639|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004axt.1||0.5924410|-0.3599635	chr9	100440044	100441882	-	NA	NA	NA	NA	NCBP1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80chr9:100430044-100436030"	NA	inner
CUST_7220_PI429285431	0.91565305	A	0.91059065	A	1.00351515199361	0	lncRNA	7713-1_{1..285}	"transcript_id ""ENST00000464317.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000464317.2"" | genecode_v17"	chr5	133853501	133853785	+	ENSG00000240250.2	ENST00000464317.2	RN7SL541P	RN7SL541P-201	PHF15	NA	chr5:133861798-133863785	inter
CUST_15648_PI429285431	2.8903441	A	0.91812116	A	3.92372230282764	0	lncRNA	17341-1_{1..488}	lnc-PEX2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PEX2-3:1	chr8	 77075196	 77075683	-	lnc-PEX2-3	lnc-PEX2-3:1	XLOC_007124	linc-JPH1-1	NA	NA	NA	inter
LNCA_21_P0011746	0.8874209	A	0.9023466	A	0.989707625872359	0	lncRNA	TCONS_l2_00013086	NA	NA	NA	NA	XLOC_l2_007034	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007034), lincRNA [TCONS_l2_00013086]"	chr19:37176271-37176212	hs|19q13.12	Agilent_HUMAN_G3V2	TCONS_l2_00013086	TCONS_l2_00013086	chr19	 37176212	 37176271	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28891_PI429285431	2.45009	A	1.6738342	A	1.71268021244705	0	lncRNA	30607-1_{1..542}	n326314|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000085146|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000085146|-0.9568560|-0.2510148	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326314|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000085146|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000085146|-0.9568560|-0.2510148	chr1	179410242	179410783	+	NA	NA	NA	NA	AXDND1	NA	chr1:179400242-179427967	inner
LNCA_21_P0008257	7.8244276	P	8.037379	P	0.862770408159289	0	lncRNA	TCONS_00022289	NA	NA	NA	NA	XLOC_010634	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010634), lincRNA [TCONS_00022289]"	chr13:61191753-61191694	hs|13q21.2	Agilent_HUMAN_G3V2	TCONS_00022289	TCONS_00022289	chr13	 61191694	 61191753	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006108	1.7613959	A	0.89605784	A	1.82176650322048	0	lncRNA	ENST00000451449	NA	NA	NA	NA	XLOC_007855	NA	ENST00000451449	NA	NA	"BROAD Institute lincRNA (XLOC_007855), lincRNA [TCONS_00015882]"	chr9:129375886-129375827	hs|9q33.3	Agilent_HUMAN_G3V2	ENST00000451449	ENST00000451449	chr9	129375827	129375886	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30689_PI429285431	0.891317	A	0.8997675	A	0.994159681108394	0	lncRNA	32471-1_{1..314}	n336179|X92781|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324583|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324583|-0.8735990|-0.1278798	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336179|X92781|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324583|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324583|-0.8735990|-0.1278798	chr14	 22237067	 22237380	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34945_PI429285431	5.718926	P	6.3786345	P	0.63300618448549	0	lncRNA	36363-1_{1..2524}	n341864|BC035191|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4344|NULL|-1.0270300|-0.3646568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n341864|BC035191|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4344|NULL|-1.0270300|-0.3646568	chr6	 45539448	 45541971	-	NA	NA	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-17.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20"	NA	inter
CUST_36952_PI429285431	2.8241603	A	2.8723314	A	0.967161619878545	0	lncRNA	38104-1_{1..1606}	n345420|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_969|NULL|-1.6639500|-0.3176034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345420|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_969|NULL|-1.6639500|-0.3176034	chr1	101522990	101524595	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42714_PI429285431	0.89305246	A	2.1228504	A	0.426377158944149	0	lncRNA	45647-1_{1..122}	ENST00000384049 ncrna:snoRNA chromosome:GRCh37:8:120400588:120400709:1 gene:ENSG00000206776 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384049 ncrna:snoRNA chromosome:GRCh37:8:120400588:120400709:1 gene:ENSG00000206776 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	120400588	120400709	+	ENSG00000206776	ENST00000384049	NA	NA	NA	NA	NA	inter
CUST_14942_PI429285431	4.901157	P	5.3931866	P	0.711024116950868	0	lncRNA	16606-1_{1..287}	lnc-ABI3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABI3-1:3	chr17	 47316412	 47316698	+	lnc-ABI3-1	lnc-ABI3-1:3	XLOC_012229	linc-NGFR-4	PHOSPHO1	NA	chr17:47306412-47308128	inter
CUST_32946_PI429285431	3.0981061	A	3.854869	P	0.591822766113148	0	lncRNA	34567-1_{1..3000}	n339621|BX537540|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2065|NULL|1.3600800|-0.2417265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339621|BX537540|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2065|NULL|1.3600800|-0.2417265	chr3	141024909	141027908	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00"	NA	inter
CUST_22710_PI429285431	0.8940755	A	0.89204645	A	1.00140741977362	0	lncRNA	24294-1_{1..418}	lnc-FGF10-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FGF10-4:1	chr5	 45267793	 45268210	-	lnc-FGF10-4	lnc-FGF10-4:1	ENSG00000251117.1	RP11-454E7.1	HCN1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00chr5:45259352-45278115"	NA	inner
CUST_8487_PI429285431	0.9074318	A	0.9176485	A	0.992943339186978	0	lncRNA	10051-1_{1..1267}	lnc-POMP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-POMP-1:1	chr13	 29297906	 29299172	+	lnc-POMP-1	lnc-POMP-1:1	ENSG00000246716	AL359454.1	SLC46A3	"hg19_refFlat_CYP51A1:range=chr7:91742979-917636785'pad=0,hg19_refFlat_CYP51A1:range=chr7:91742979-917636785'pad=0 3'pad=0 strand=- repeatMasking=none,-97.80chr13:29287906-29293150"	NA	inter
CUST_5901_PI429285431	0.8866941	A	0.8804305	A	1.0043510350653	0	lncRNA	5833-1_{1..308}	"transcript_id ""ENST00000572848.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000572848.1"" | genecode_v17"	chr17	 50467875	 50468182	+	ENSG00000263317.1	ENST00000572848.1	RP11-429O1.1	RP11-429O1.1-001	NA	NA	NA	inter
LNCA_21_P0003306	0.8733198	A	0.8735863	A	0.999815293336757	0	lncRNA	TCONS_00007317	NA	NA	NA	NA	XLOC_003347	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003347), lincRNA [TCONS_00007317]"	chr3:181893509-181893450	hs|3q26.33	Agilent_HUMAN_G3V2	TCONS_00007317	TCONS_00007317	chr3	181893450	181893509	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15944_PI429285431	2.7482512	A	2.91072	A	0.893494776376327	0	lncRNA	17641-1_{1..278}	lnc-RP11-80A15.1.1-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-80A15.1.1-5:4	chr14	 25720986	 25721263	+	lnc-RP11-80A15.1.1-5	lnc-RP11-80A15.1.1-5:4	XLOC_010775	linc-FOXG1-6	NA	NA	NA	inter
LNCA_19_P00317819	0.87409586	A	0.87280643	A	1.00089416429578	0	lncRNA	ENST00000455821	NA	NA	NA	NA	XLOC_002977	NA	ENST00000455821	THC2742622	NA	"BROAD Institute lincRNA (XLOC_002977), lincRNA [TCONS_00005698]"	chr3:193965551-193965610	hs|3q29	Agilent_HUMAN_G3V2	ENST00000455821	ENST00000455821	chr3	193965551	193965610	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8361_PI429285431	1.6044185	A	1.1231549	A	1.39596580275477	0	lncRNA	9941-1_{1..1978}	lnc-PRPF18-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRPF18-2:1	chr10	 13725162	 13727139	+	lnc-PRPF18-2	lnc-PRPF18-2:1	ENSG00000248372	ENST00000514038	FRMD4A	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60chr10:13715162-13736874"	NA	inner
CUST_15073_PI429285431	0.89369684	A	0.8863162	A	1.00512897821277	0	lncRNA	16737-1_{1..925}	lnc-RP11-17M16.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-17M16.1.1-2:1	chr18	 74253650	 74254574	+	lnc-RP11-17M16.1.1-2	lnc-RP11-17M16.1.1-2:1	XLOC_012726	linc-ZNF236-4	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_27955_PI429285431	0.892213	A	0.8869182	A	1.00367681866597	0	lncRNA	29559-1_{1..747}	n325203|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329327|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329327|-0.9211610|-0.4946836	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325203|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329327|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329327|-0.9211610|-0.4946836	chr2	104790466	104791212	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60"	NA	inter
LNCA_21_P0010113	0.87512636	A	1.0637269	A	0.877456469260392	0	lncRNA	TCONS_00028638	NA	NA	NA	NA	XLOC_013684	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013684), lincRNA [TCONS_00028638]"	chr20:22548432-22547935	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028638	TCONS_00028638	chr20	 22547935	 22548432	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36363_PI429285431	5.0191255	P	5.225118	P	0.866942070391361	0	lncRNA	37584-1_{1..511}	n344881|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_430|NULL|-1.3205900|-0.2204228	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344881|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_430|NULL|-1.3205900|-0.2204228	chr6	   383120	   383630	-	NA	NA	NA	NA	IRF4	NA	chr6:391739-393631	inter
CUST_46255_PI429285431	4.647837	P	4.648694	P	0.999406149265448	0	lncRNA	50494-1_{1..725}	"gi|410170823|ref|XR_171060.1| PREDICTED: Homo sapiens uncharacterized LOC100652869 (LOC100652869), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170823|ref|XR_171060.1| PREDICTED: Homo sapiens uncharacterized LOC100652869 (LOC100652869), misc_RNA"	NA	NA	NA	NA	NA	XR_171060.1	NA	NA	NA	NA	NA	Unknown
CUST_37422_PI429285431	4.4700527	P	4.8453126	P	0.770966511383654	0	lncRNA	38529-1_{1..860}	n345878|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1427|NULL|-1.5324400|-0.2159008	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n345878|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1427|NULL|-1.5324400|-0.2159008	chr2	   740647	   741506	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45967_PI429285431	10.583233	P	10.509571	P	1.05238456922489	0	lncRNA	50260-1_{1..1122}	"gi|335353814|ref|NR_033796.2| Homo sapiens destrin (actin depolymerizing factor) pseudogene 2 (DSTNP2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|335353814|ref|NR_033796.2| Homo sapiens destrin (actin depolymerizing factor) pseudogene 2 (DSTNP2), non-coding RNA"	NW_003871083.2	    86266	    87387	+	171220	NR_033796.2	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40"	NA	Unknown
CUST_3909_PI429285431	6.9743614	P	6.3391147	P	1.5532033241461	0	lncRNA	3878-1_{1..537}	"transcript_id ""ENST00000527684.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527684.1"" | genecode_v17"	chr11	 35600978	 35601514	-	ENSG00000254669.1	ENST00000527684.1	RP5-945I17.2	RP5-945I17.2-001	NA	NA	NA	inter
CUST_4965_PI429285431	10.041448	P	9.909306	P	1.09591962911066	0	lncRNA	4909-1_{1..515}	"transcript_id ""ENST00000553963.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553963.1"" | genecode_v17"	chr14	 96322085	 96322599	-	ENSG00000258516.1	ENST00000553963.1	RP11-185P18.2	RP11-185P18.2-001	NA	NA	NA	inter
CUST_43261_PI429285431	0.925493	A	0.99379253	A	0.95376151157484	0	lncRNA	48079-1_{1..550}	ENST00000595301 havana:sense_intronic chromosome:GRCh37:19:58778001:58779051:1 gene:ENSG00000268201 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000595301 havana:sense_intronic chromosome:GRCh37:19:58778001:58779051:1 gene:ENSG00000268201 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 58778001	 58778550	+	ENSG00000268201	ENST00000595301	NA	NA	ZNF544	"hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-25.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-27.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60chr19:58768001-58775010"	NA	inter
CUST_48597_PI429285431	0.8989203	A	0.9161053	A	0.988158929554434	0	lncRNA	52443-1_{1..1611}	hg19_lincRNAsTranscripts_TCONS_l2_00013565 range=chr2:34902605-34963290 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013565 range=chr2:34902605-34963290 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 34902605	 34904215	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39316_PI429285431	7.543351	P	7.722734	P	0.88308058421523	0	lncRNA	40283-1_{1..1207}	n386351|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010iao.1||1.3270600|-0.2601805	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386351|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010iao.1||1.3270600|-0.2601805	chr3	197340898	197342104	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010070	0.92444766	A	1.0413493	A	0.922165987162183	0	lncRNA	TCONS_00028463	NA	NA	NA	NA	XLOC_013837	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013837), lincRNA [TCONS_00028463]"	chr20:61405491-61405432	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028463	TCONS_00028463	chr20	 61405432	 61405491	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49248_PI429285431	4.8933773	P	4.414838	P	1.39333223080802	0	lncRNA	53067-1_{1..416}	hg19_lincRNAsTranscripts_TCONS_l2_00022201 range=chr5:12711336-12759810 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022201 range=chr5:12711336-12759810 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 12711336	 12711751	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11888_PI429285431	1.9381518	A	1.4082586	A	1.44382230811674	0	lncRNA	13470-1_{1..497}	lnc-CDKN3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDKN3-1:1	chr14	 54582150	 54582646	+	lnc-CDKN3-1	lnc-CDKN3-1:1	XLOC_010834	linc-CDKN3-1	NA	NA	NA	inter
CUST_14263_PI429285431	0.90537316	A	0.9188945	A	0.99067150421695	0	lncRNA	15921-1_{1..390}	lnc-P2RY1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-P2RY1-3:2	chr3	152394903	152395292	+	lnc-P2RY1-3	lnc-P2RY1-3:2	XLOC_002878	linc-P2RY1-2	NA	NA	NA	inter
CUST_2349_PI429285431	0.91175103	A	0.9078587	A	1.00270160032809	0	lncRNA	2341-1_{1..819}	"transcript_id ""ENST00000511091.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511091.1"" | genecode_v17"	chr5	124165165	124165983	+	ENSG00000248443.1	ENST00000511091.1	RP11-284A20.3	RP11-284A20.3-001	NA	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10"	NA	inter
LNCA_21_P0014233	1.8941469	A	0.920704	A	1.96352082604225	0	lncRNA	XR_108966	XR_108966	XR_108966	NA	Hs.635148	LOC100506605	uncharacterized LOC100506605	NA	THC2632306	NA	"PREDICTED: Homo sapiens hypothetical LOC100506605 (LOC100506605), miscRNA [XR_108966]"	chr9:85885228-85885287	hs|9q21.32	Agilent_HUMAN_G3V2	XR_108966	XR_108966	chr9	 85885228	 85885287	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33567_PI429285431	4.4815884	P	5.046719	P	0.675894228404829	0	lncRNA	35132-1_{1..1083}	n340317|BC038766|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2778|NULL|-1.0047800|-0.3344746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340317|BC038766|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2778|NULL|-1.0047800|-0.3344746	chr5	  8450855	  8451937	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30244_PI429285431	3.2456954	P	3.4669976	A	0.857790830954159	0	lncRNA	32019-1_{1..352}	n335115|AY114102|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250713|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250713|1.4891000|-0.1408096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335115|AY114102|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250713|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250713|1.4891000|-0.1408096	chrX	150345344	150345695	+	NA	NA	NA	NA	GPR50	NA	chrX:150345056-150349937	inner
CUST_32127_PI429285431	5.7173343	P	6.0748835	P	0.780489322158054	0	lncRNA	33827-2_{3001..3986}	n338692|CR627155|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1110|NULL|-0.3256380|-0.2326804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338692|CR627155|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1110|NULL|-0.3256380|-0.2326804	chr2	 20815056	 20816041	-	NA	NA	NA	NA	HS1BP3	NA	chr2:20802056-20826027	inter
CUST_23486_PI429285431	7.132288	P	7.3369446	P	0.867745209137062	0	lncRNA	25053-1_{1..583}	lnc-SLC36A4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC36A4-1:1	chr11	 92499789	 92500371	-	lnc-SLC36A4-1	lnc-SLC36A4-1:1	ENSG00000255506.1	RP11-203F8.1	FAT3	NA	chr11:92489789-92510033	inner
CUST_158_PI429285431	1.4254622	A	0.92027503	A	1.41930748003938	0	lncRNA	149-1_{1..353}	"transcript_id ""ENST00000433876.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433876.1"" | genecode_v17"	chr1	  8865919	  8866271	+	ENSG00000228423.1	ENST00000433876.1	RP4-633I8.4	RP4-633I8.4-001	RERE	NA	chr1:8855919-8877110	inner
CUST_99_PI429201921	0.9277763	A	0.92433846	A	1.0023857705353	0	lncRNA	102-1_{1..2906}	TC0X001654.hg.1	TCONS_00016930-XLOC_007959 // Rinn lincRNAs // linc-ATP6AP2-2 chrX:+:39868528-39871435 // chrX // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrX:+:39868528-39871435	NA	Affy_HUMAN_HTA2.0	TCONS_00016930-XLOC_007959	linc-ATP6AP2-2	chrX	 39868528	 39871435	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29965_PI429285431	0.8818726	A	0.88768774	A	0.995977364665182	0	lncRNA	31731-1_{1..324}	n334183|S46006|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000215634|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000215634|0.5036240|-0.1257364	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334183|S46006|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000215634|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000215634|0.5036240|-0.1257364	chr8	 91090597	 91090920	-	NA	NA	NA	NA	CALB1	NA	chr8:91080597-91095107	inner
CUST_19907_PI429285431	0.9047123	A	1.1175158	A	0.862858860868085	0	lncRNA	21562-1_{1..560}	lnc-SLC4A10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC4A10-1:1	chr2	162284952	162285511	+	lnc-SLC4A10-1	lnc-SLC4A10-1:1	ENSG00000251621.1	AC009487.5	TBR1	NA	chr2:162274952-162281573	inter
LNCA_21_P0011014	5.9010305	P	6.1640263	P	0.833355633235739	0	lncRNA	TCONS_l2_00005153	NA	NA	NA	NA	XLOC_l2_002742	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002742), lincRNA [TCONS_l2_00005153]"	chr11:93343018-93342959	hs|11q21	Agilent_HUMAN_G3V2	TCONS_l2_00005153	TCONS_l2_00005153	chr11	 93342959	 93343018	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33569_PI429285431	1.4009844	A	1.2361109	A	1.12106777500043	0	lncRNA	35134-1_{1..1602}	n340320|BC043282|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2781|NULL|-0.8069500|-0.2002933	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340320|BC043282|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2781|NULL|-0.8069500|-0.2002933	chr5	  8333595	  8335196	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16378_PI429285431	4.0701876	P	4.2770033	P	0.866447535425775	0	lncRNA	18076-1_{1..765}	lnc-ZNF146-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF146-1:4	chr19	 36811922	 36812686	+	lnc-ZNF146-1	lnc-ZNF146-1:4	XLOC_013054	linc-ZNF382-3	NA	NA	NA	inter
LNCA_21_P0014378	2.7674441	A	3.6678402	P	0.535739620761996	0	lncRNA	ENST00000544914	XR_109514	XR_109514	NA	NA	HKR1	"HKR1, GLI-Kruppel zinc finger family member"	ENST00000544914	THC2540910	GO:0005622|GO:0006355|GO:0008270|GO:0007275|GO:0005634|GO:0003676|GO:0003677|GO:0046872	"PREDICTED: Homo sapiens hypothetical LOC100507342 (LOC100507342), miscRNA [XR_109514]"	chr19:37813117-37815113	hs|19q13.12	Agilent_HUMAN_G3V2	ENST00000544914	ENST00000544914	chr19	 37813117	 37815113	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004174	0.87712777	A	0.8841567	A	0.995139766333109	0	lncRNA	ENST00000515364	NA	NA	NA	NA	XLOC_004966	NA	ENST00000515364	NA	NA	"BROAD Institute lincRNA (XLOC_004966), lincRNA [TCONS_00009761]"	chr5:118096488-118096429	hs|5q23.1	Agilent_HUMAN_G3V2	ENST00000515364	ENST00000515364	chr5	118096429	118096488	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37707_PI429285431	9.113149	P	8.926236	P	1.13832538165354	0	lncRNA	38801-1_{1..1203}	n346203|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1753|NULL|-1.3173300|-0.3281094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346203|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1753|NULL|-1.3173300|-0.3281094	chr17	 62964187	 62965389	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001082	7.0897827	P	7.4859896	P	0.759853448168468	0	lncRNA	ENST00000509202	NA	AK022825	NA	Hs.720494	XLOC_000643	NA	ENST00000509202	THC2612622	NA	"BROAD Institute lincRNA (XLOC_000643), lincRNA [TCONS_00000431]"	chr1:246943747-246943806	hs|1q44	Agilent_HUMAN_G3V2	ENST00000509202	ENST00000509202	chr1	246943747	246943806	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43893_PI429285431	3.7565887	P	3.3301516	P	1.34391053484689	0	lncRNA	48610-1_{1..3000}	"gi|385275069|ref|NR_047657.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385275069|ref|NR_047657.1| Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 6, non-coding RNA"	Chr2	 97258892	 97261891	-	55683	NR_047657.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002881	5.412144	P	5.5647745	P	0.899608688517765	0	lncRNA	ENST00000466206	NA	NA	NA	NA	XLOC_003263	NA	ENST00000466206	NA	NA	"BROAD Institute lincRNA (XLOC_003263), lincRNA [TCONS_00005832]"	chr3:135075013-135074954	hs|3q22.2	Agilent_HUMAN_G3V2	ENST00000466206	ENST00000466206	chr3	135074954	135075013	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10509_PI429285431	9.443699	P	10.107004	P	0.631430126237716	0	lncRNA	12035-1_{1..2165}	lnc-KLF3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF3-2:1	chr4	 38753053	 38755217	+	lnc-KLF3-2	lnc-KLF3-2:1	XLOC_003514	linc-FAM114A1-1	NA	NA	NA	inter
LNCA_21_P0008202	1.3953052	A	0.88869977	A	1.4207034346387	0	lncRNA	XR_109147	XR_109147	XR_109147	NA	Hs.594844	DNAJC3-AS1	DNAJC3 antisense RNA 1 (non-protein coding)	NA	THC2539209	NA	"PREDICTED: Homo sapiens DNAJC3 antisense RNA 1 (non-protein coding) (DNAJC3-AS1), miscRNA [XR_109147]"	chr13:96328168-96328109	hs|13q32.1	Agilent_HUMAN_G3V2	XR_109147	XR_109147	chr13	 96328109	 96328168	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001201	2.819978	A	3.4898071	P	0.628581143852223	0	lncRNA	ENST00000456771	NA	NA	NA	NA	XLOC_001114	NA	ENST00000456771	THC2652771	NA	"BROAD Institute lincRNA (XLOC_001114), lincRNA [TCONS_00000694]"	chr1:181160202-181160143	hs|1q25.3	Agilent_HUMAN_G3V2	ENST00000456771	ENST00000456771	chr1	181160143	181160202	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7036_PI429285431	0.9118979	A	0.91797996	A	0.995793111112348	0	lncRNA	6981-1_{1..526}	"transcript_id ""ENST00000412652.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412652.1"" | genecode_v17"	chrX	 34224842	 34225367	-	ENSG00000233571.1	ENST00000412652.1	RP11-545D19.1	RP11-545D19.1-001	NA	NA	NA	inter
LNCA_21_P0003632	1.069967	A	1.2712836	A	0.869756463362549	0	lncRNA	TCONS_00008172	NA	NA	NA	NA	XLOC_003615	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003615), lincRNA [TCONS_00008172]"	chr4:99594434-99594493	hs|4q23	Agilent_HUMAN_G3V2	TCONS_00008172	TCONS_00008172	chr4	 99594434	 99594493	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15815_PI429285431	4.8738055	P	4.4952364	P	1.30005179282971	0	lncRNA	17505-1_{1..371}	lnc-GATA3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GATA3-3:1	chr10	  8139111	  8139481	+	lnc-GATA3-3	lnc-GATA3-3:1	XLOC_008382	linc-CELF2-9	NA	NA	NA	inter
CUST_5169_PI429285431	3.3286605	P	2.848767	P	1.39464070992943	0	lncRNA	5110-1_{1..655}	"transcript_id ""ENST00000559600.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559600.1"" | genecode_v17"	chr15	 45997393	 45998047	+	ENSG00000259200.1	ENST00000559600.1	RP11-718O11.1	RP11-718O11.1-001	NA	NA	NA	inter
CUST_32812_PI429285431	1.8551021	A	1.846685	A	1.0058513417455	0	lncRNA	34447-1_{1..445}	n339459|AY063455|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1897|NULL|1.0335300|-0.2297830	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n339459|AY063455|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1897|NULL|1.0335300|-0.2297830	chr21	 31581468	 31581912	-	NA	NA	NA	NA	CLDN8	NA	chr21:31586324-31588469	inter
CUST_50056_PI429285431	6.464529	P	6.760844	P	0.814329741793212	0	lncRNA	53791-2_{3001..3924}	hg19_lincRNAsTranscripts_TCONS_l2_00027777 range=chr8:58106131-58126740 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027777 range=chr8:58106131-58126740 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 58109131	 58110054	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26723_PI429285431	3.9483445	P	4.163309	P	0.861567359802198	0	lncRNA	28219-1_{1..694}	n4186|AY362863|UBE3AantisenseRNA|Homosapiens|UBE3AantisenseRNA|NONCODEv2.0|n4186|NULL|-1.5906100|-0.1075469	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n4186|AY362863|UBE3AantisenseRNA|Homosapiens|UBE3AantisenseRNA|NONCODEv2.0|n4186|NULL|-1.5906100|-0.1075469	chr15	 25322012	 25322705	+	NA	NA	NA	NA	SNRPN	NA	chr15:25312012-25338606	inter
CUST_28241_PI429285431	1.1045097	A	1.2024823	A	0.934345092014124	0	lncRNA	29877-1_{1..443}	n325533|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255296|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255296|-1.0572000|-0.3627549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325533|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255296|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255296|-1.0572000|-0.3627549	chr17	 67598556	 67598998	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49868_PI429285431	3.2683918	P	2.9617214	P	1.23684987406291	0	lncRNA	53620-1_{1..461}	hg19_lincRNAsTranscripts_TCONS_l2_00026031 range=chr7:76589121-76597779 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026031 range=chr7:76589121-76597779 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 76589121	 76589581	+	NA	NA	NA	NA	NA	"hg19_refFlat_FDPS:range=chr1:155279856-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155279856-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_FDPS:range=chr1:155287765-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155287765-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_FDPS:range=chr1:155279581-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155279581-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80"	NA	inter
CUST_19209_PI429285431	7.8720646	P	8.06147	P	0.876967084717917	0	lncRNA	20879-1_{1..479}	lnc-ANAPC11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANAPC11-2:1	chr17	 79825889	 79826367	+	lnc-ANAPC11-2	lnc-ANAPC11-2:1	ENSG00000262413.1	RP11-498C9.3	P4HB	NA	chr17:79815889-79818544	inner
LNCA_21_P0005068	0.87108374	A	0.8737479	A	0.998155049025698	0	lncRNA	TCONS_00012328	NA	NA	NA	NA	XLOC_005871	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005871), lincRNA [TCONS_00012328]"	chr6:148476390-148476331	hs|6q24.3	Agilent_HUMAN_G3V2	TCONS_00012328	TCONS_00012328	chr6	148476331	148476390	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34297_PI429285431	0.87804437	A	1.5916408	A	0.609798104083427	0	lncRNA	35795-1_{1..899}	n341157|BC018531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3623|NULL|-0.6943830|-0.2946878	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341157|BC018531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3623|NULL|-0.6943830|-0.2946878	chr11	128762462	128763360	-	NA	NA	NA	NA	KCNJ5	NA	chr11:128761313-128773339	inner
CUST_5191_PI429285431	0.8871095	A	0.92528546	A	0.973885480209584	0	lncRNA	5132-1_{1..2465}	"transcript_id ""ENST00000564401.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564401.1"" | genecode_v17"	chr15	 56686519	 56688983	-	ENSG00000259941.1	ENST00000564401.1	RP11-48G14.2	RP11-48G14.2-001	TEX9	"hg19_refFlat_TEX9:range=chr15:56657649-567206425'pad=0,hg19_refFlat_TEX9:range=chr15:56657649-567206425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10chr15:56676519-56698983"	NA	inner
CUST_24984_PI429285431	2.2318594	A	1.9035103	A	1.25557577584084	0	lncRNA	26524-1_{1..622}	lnc-TRAPPC11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TRAPPC11-2:1	chr4	184909851	184910472	+	lnc-TRAPPC11-2	lnc-TRAPPC11-2:1	ENSG00000248206.1	RP11-739P1.2	STOX2	NA	chr4:184899851-184919903	inner
LNCA_21_P0009767	1.4303391	A	0.9400137	A	1.40476168413645	0	lncRNA	TCONS_00027356	NA	NA	NA	NA	XLOC_013333	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013333), lincRNA [TCONS_00027356]"	chr19:38039543-38038789	hs|19q13.12	Agilent_HUMAN_G3V2	TCONS_00027356	TCONS_00027356	chr19	 38038789	 38039543	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22958_PI429285431	6.9907765	P	7.010118	P	0.986682960752023	0	lncRNA	24534-1_{1..3000}	lnc-TRIM29-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM29-2:1	chr11	120765026	120768025	-	lnc-TRIM29-2	lnc-TRIM29-2:1	ENSG00000250493.2	RP11-640N11.2	GRIK4	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80chr11:120755026-120775506"	NA	inner
CUST_43983_PI429285431	2.8162792	A	1.5155699	A	2.46349970689579	0	lncRNA	48683-1_{1..1422}	"gi|304307751|ref|NR_036549.1| Homo sapiens uncharacterized LOC100129961 (LOC100129961), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|304307751|ref|NR_036549.1| Homo sapiens uncharacterized LOC100129961 (LOC100129961), non-coding RNA"	Chr2	135624203	135625624	-	100129961	NR_036549.1	NA	NA	NA	"hg19_refFlat_ACMSD:range=chr2:135596253-1356594305'pad=0,hg19_refFlat_ACMSD:range=chr2:135596253-1356594305'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40"	NA	inter
CUST_8354_PI429285431	1.8156264	A	2.9837718	A	0.444993016368013	0	lncRNA	9933-1_{1..1925}	lnc-RWDD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RWDD4-1:1	chr4	184658254	184660178	-	lnc-RWDD4-1	lnc-RWDD4-1:1	ENSG00000239335	XLOC_004201	NA	NA	NA	inter
CUST_30674_PI429285431	0.88945055	A	0.90178216	A	0.991488806344496	0	lncRNA	32456-1_{1..285}	n336142|X92031|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324509|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324509|-1.3323400|-0.1819942	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336142|X92031|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324509|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324509|-1.3323400|-0.1819942	chr14	 22466223	 22466507	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10848_PI429285431	0.9065988	A	0.96463937	A	0.960567851463259	0	lncRNA	12386-1_{1..512}	lnc-TMEM206-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TMEM206-5:3	chr1	212407845	212408356	-	lnc-TMEM206-5	lnc-TMEM206-5:3	XLOC_001191	linc-INTS7	NA	NA	NA	inter
LNCA_21_P0009788	8.5762005	P	7.9226904	P	1.57299065515928	0	lncRNA	TCONS_00027537	NA	NA	NA	NA	XLOC_013064	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013064), lincRNA [TCONS_00027537]"	chr19:38041120-38041179	hs|19q13.12	Agilent_HUMAN_G3V2	TCONS_00027537	TCONS_00027537	chr19	 38041120	 38041179	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49066_PI429285431	2.1802144	A	2.0785823	A	1.07298663041834	0	lncRNA	52891-1_{1..2214}	hg19_lincRNAsTranscripts_TCONS_l2_00020368 range=chr4:3940240-3951474 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020368 range=chr4:3940240-3951474 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	  3940240	  3942453	+	NA	NA	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0,hg19_refFlat_FAM86A:range=chr16:5135633-51477405'pad=0 3'pad=0 strand=- repeatMasking=none,-98.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0,hg19_refFlat_FAM86B2:range=chr8:12283398-122938525'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0,hg19_refFlat_FAM86B1:range=chr8:12041115-120515795'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0,hg19_refFlat_FAM86C1:range=chr11:71498583-715106935'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80"	NA	inter
CUST_33201_PI429285431	3.7799342	P	4.1509776	P	0.773223076554482	0	lncRNA	34792-1_{1..2553}	n339896|AK125262|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2344|NULL|-0.8317210|-0.2260302	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339896|AK125262|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2344|NULL|-0.8317210|-0.2260302	chr18	 56202646	 56205198	+	NA	NA	NA	NA	ALPK2	"hg19_refFlat_ALPK2:range=chr18:56149055-562790295'pad=0,hg19_refFlat_ALPK2:range=chr18:56149055-562790295'pad=0 3'pad=0 strand=- repeatMasking=none,-97.70chr18:56192646-56215784"	NA	inner
CUST_9831_PI429285431	1.5097141	A	1.9871392	A	0.718258417313861	0	lncRNA	11352-1_{1..324}	lnc-GLIPR1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLIPR1-2:1	chr12	 76408339	 76408662	+	lnc-GLIPR1-2	lnc-GLIPR1-2:1	XLOC_009808	linc-ZDHHC17-2	NA	NA	NA	inter
LNCA_21_P0013277	1.9449325	A	2.6247284	A	0.624253582194645	0	lncRNA	TCONS_l2_00026264	NA	NA	NA	NA	XLOC_l2_013646	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013646), lincRNA [TCONS_l2_00026264]"	chr7:149589455-149606765	hs|7q36.1	Agilent_HUMAN_G3V2	TCONS_l2_00026264	TCONS_l2_00026264	chr7	149589455	149606765	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46455_PI429285431	2.648684	A	3.7617311	P	0.462316545454858	0	lncRNA	50659-2_{3001..6000}	"gi|388454182|ref|NR_049762.1| Homo sapiens mitogen-activated protein kinase binding protein 1 (MAPKBP1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388454182|ref|NR_049762.1| Homo sapiens mitogen-activated protein kinase binding protein 1 (MAPKBP1), transcript variant 5, non-coding RNA"	Chr15	 42069632	 42072631	+	23005	NR_049762.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.71"	NA	inter
LNCA_21_P0010547	3.317314	P	4.2916827	P	0.50896251108782	0	lncRNA	TCONS_l2_00000487	NA	NA	NA	NA	XLOC_l2_000356	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000356), lincRNA [TCONS_l2_00000487]"	chr1:111795056-111795115	hs|1p13.3	Agilent_HUMAN_G3V2	TCONS_l2_00000487	TCONS_l2_00000487	chr1	111795056	111795115	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45625_PI429285431	0.9140253	A	0.91757613	A	0.997541778583821	0	lncRNA	50008-1_{1..1867}	"gi|333360898|ref|NR_038223.1| Homo sapiens ZNF503 antisense RNA 1 (ZNF503-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|333360898|ref|NR_038223.1| Homo sapiens ZNF503 antisense RNA 1 (ZNF503-AS1), transcript variant 1, non-coding RNA"	Chr10	 77056141	 77058007	+	253264	NR_038223.1	NA	NA	NA	NA	NA	inter
CUST_25119_PI429285431	2.8177543	A	1.0440348	A	3.41934383149001	0	lncRNA	26657-1_{1..565}	lnc-SLC3A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC3A2-1:1	chr11	 62601035	 62601599	+	lnc-SLC3A2-1	lnc-SLC3A2-1:1	ENSG00000256690.1	RP11-727F15.9	WDR74	"hg19_refFlat_WDR74:range=chr11:62600424-626070425'pad=0,hg19_refFlat_WDR74:range=chr11:62600424-626070425'pad=0 3'pad=0 strand=- repeatMasking=none,-97.10chr11:62600383-62607628"	NA	inner
CUST_38919_PI429285431	2.0585651	A	2.1921074	A	0.911590439991644	0	lncRNA	39908-1_{1..1569}	n385012|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qeq.1||-1.1319700|-0.3013013	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385012|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qeq.1||-1.1319700|-0.3013013	chr6	134749385	134750953	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47557_PI429285431	2.49169	A	1.0101242	A	2.79251649010417	0	lncRNA	51565-1_{1..3000}	"gi|299782544|ref|NR_033835.1| Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class A (PIGA), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299782544|ref|NR_033835.1| Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class A (PIGA), transcript variant 4, non-coding RNA"	ChrX	 15337573	 15340572	-	5277	NR_033835.1	NA	NA	NA	NA	NA	inter
CUST_1499_PI429285431	2.4425418	A	4.048034	P	0.328623555397615	0	lncRNA	1486-1_{1..390}	"transcript_id ""ENST00000485020.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000485020.1"" | genecode_v17"	chr3	151515272	151515661	+	ENSG00000250271.1	ENST00000485020.1	RP11-64D22.5	RP11-64D22.5-001	AADAC	NA	chr3:151531861-151536037	inter
CUST_18574_PI429285431	11.0964775	P	11.181011	P	0.943089437569674	0	lncRNA	20282-1_{1..275}	lnc-FRMD1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FRMD1-2:2	chr6	168379013	168379287	-	lnc-FRMD1-2	lnc-FRMD1-2:2	ENSG00000235994	RP3-470B24.5	MLLT4	NA	chr6:168369013-168372700	inter
CUST_24887_PI429285431	3.5261087	P	3.158764	P	1.28997642511074	0	lncRNA	26428-1_{1..430}	lnc-C10orf31-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf31-2:1	chr10	 11213225	 11213654	-	lnc-C10orf31-2	lnc-C10orf31-2:1	ENSG00000230322.1	RP3-323N1.2	CELF2	NA	chr10:11203225-11223339	inner
LNCA_21_P0014913	11.579512	P	12.496224	P	0.529714901860416	0	lncRNA	XR_110126	XR_110126	XR_110126	NA	Hs.351262	LINC00458	long intergenic non-protein coding RNA 458	NA	THC2499872	NA	"PREDICTED: Homo sapiens hypothetical LOC100507428 (LOC100507428), miscRNA [XR_110126]"	chr13:54690041-54689982	hs|13q14.3	Agilent_HUMAN_G3V2	XR_110126	XR_110126	chr13	 54689982	 54690041	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20289_PI429285431	4.820389	P	4.689916	P	1.09465253369951	0	lncRNA	21933-1_{1..609}	lnc-UBB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBB-1:1	chr17	 16287127	 16287735	+	lnc-UBB-1	lnc-UBB-1:1	ENSG00000249281.1	AC093484.6	UBB	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr17:16284367-16286054"	NA	inter
CUST_22996_PI429285431	0.8880756	A	0.89101255	A	0.997966332098522	0	lncRNA	24570-1_{1..397}	lnc-RTN4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RTN4-2:1	chr2	 54975497	 54975893	-	lnc-RTN4-2	lnc-RTN4-2:1	ENSG00000231334.1	AC104781.1	EML6	NA	chr2:54965497-54985541	inner
CUST_35730_PI429285431	10.558828	P	10.940243	P	0.767684274037698	0	lncRNA	37147-1_{1..1344}	n342897|CR611979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5405|NULL|14.8854000|-0.1670330	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342897|CR611979|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5405|NULL|14.8854000|-0.1670330	chr12	 49521754	 49523097	-	NA	NA	NA	NA	TUBA1A	NA	chr12:49578582-49582861	inner
CUST_45321_PI429285431	7.187207	P	6.7949753	P	1.31242201553247	0	lncRNA	49763-1_{1..820}	"gi|299523208|ref|NR_003667.3| Homo sapiens suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 1 (SUGT1P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299523208|ref|NR_003667.3| Homo sapiens suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 1 (SUGT1P1), non-coding RNA"	NA	NA	NA	NA	NA	NR_003667.3	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30"	NA	Unknown
CUST_13716_PI429285431	1.3601241	A	0.89989406	A	1.37576116793982	0	lncRNA	15355-1_{1..390}	lnc-GNG5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNG5-2:1	chr1	 84924612	 84925001	-	lnc-GNG5-2	lnc-GNG5-2:1	XLOC_000893	linc-TTLL7-6	NA	NA	NA	inter
CUST_30971_PI429285431	1.3629001	A	0.879249	A	1.3982778836484	0	lncRNA	32759-1_{1..215}	n337114|DQ471865|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343465|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343465|-0.3507200|-0.3540427	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337114|DQ471865|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343465|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343465|-0.3507200|-0.3540427	chr11	 27076844	 27077058	+	NA	NA	NA	NA	BBOX1	NA	chr11:27066844-27087059	inner
CUST_16851_PI429285431	5.6944313	P	5.842987	P	0.902153167469295	0	lncRNA	18559-1_{1..751}	lnc-FLNB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FLNB-1:1	chr3	 58172475	 58173225	+	lnc-FLNB-1	lnc-FLNB-1:1	XLOC_002674	linc-ABHD6	DNASE1L3	NA	chr3:58178354-58183195	inter
LNCA_21_P0010463	3.279529	P	3.7190938	P	0.737357004483542	0	lncRNA	THC2742326	NA	NA	NA	NA	XLOC_014172	NA	NA	THC2742326	NA	"BROAD Institute lincRNA (XLOC_014172), lincRNA [TCONS_00029776]"	chr22:023852407-023852466	hs|22q11.23	Agilent_HUMAN_G3V2	THC2742326	THC2742326	chr22	 23852407	 23852466	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5415_PI429285431	3.193617	P	3.5108094	P	0.802630341577752	0	lncRNA	5349-1_{1..694}	"transcript_id ""ENST00000573268.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000573268.1"" | genecode_v17"	chr16	  4296567	  4297260	-	ENSG00000262468.1	ENST00000573268.1	RP11-95P2.1	RP11-95P2.1-002	SRL	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00chr16:4286567-4292081"	NA	inter
LNCA_21_P0001379	0.8738638	A	0.8723805	A	1.0010286739354	0	lncRNA	TCONS_00001179	NA	NA	NA	NA	XLOC_000440	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000440), lincRNA [TCONS_00001179]"	chr1:161265953-161266012	hs|1q23.3	Agilent_HUMAN_G3V2	TCONS_00001179	TCONS_00001179	chr1	161265953	161266012	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2063_PI429285431	0.9077695	A	0.90241957	A	1.00371517310588	0	lncRNA	2054-1_{1..442}	"transcript_id ""ENST00000568962.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568962.1"" | genecode_v17"	chr5	  6030148	  6030589	+	ENSG00000259861.1	ENST00000568962.1	CTC-471C19.2	CTC-471C19.2-001	NA	NA	NA	inter
CUST_16866_PI429285431	7.386124	P	8.058941	P	0.627280665216158	0	lncRNA	18572-1_{1..318}	lnc-RP11-17A1.2.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-17A1.2.1-2:3	chr11	 23789323	 23789640	-	lnc-RP11-17A1.2.1-2	lnc-RP11-17A1.2.1-2:3	XLOC_009394	linc-LOC100500938-2	NA	NA	NA	inter
CUST_31432_PI429285431	2.885482	A	2.343513	A	1.45595826366864	0	lncRNA	33203-1_{1..2394}	n337902|AK095886|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|285|NULL|-1.0353400|-0.2885925	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337902|AK095886|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|285|NULL|-1.0353400|-0.2885925	chrX	154354849	154357242	+	NA	NA	NA	NA	BRCC3	NA	chrX:154344849-154351349	inter
CUST_145_PI429201921	2.655055	A	2.418191	A	1.17842831447563	0	lncRNA	128-1_{1..3000}	TC17002692.hg.1	TCONS_00025144-XLOC_012506 // Rinn lincRNAs // linc-PHB-1 chr17:-:47535222-47539111 // chr17 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr17:-:47535222-47539111	NA	Affy_HUMAN_HTA2.0	TCONS_00025144-XLOC_012506	linc-PHB-1	chr17	 47535222	 47539111	-	NA	NA	NA	NA	PRDM16	NA	chr1:2985742-2988315	Unknown
LNCA_21_P0014467	0.8742606	A	2.1202354	A	0.421622919678535	0	lncRNA	XR_109954	XR_109954	XR_109954	NA	NA	LOC100132330	"mal, T-cell differentiation protein-like pseudogene"	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100132330, transcript variant 1 (LOC100132330), miscRNA [XR_109954]"	chr2:89117551-89117492	hs|2p11.2	Agilent_HUMAN_G3V2	XR_109954	XR_109954	chr2	 89117492	 89117551	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24158_PI429285431	5.961807	P	6.4135795	P	0.73114400992808	0	lncRNA	25709-1_{1..286}	lnc-AC127496.3-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC127496.3-4:2	chr17	 78973793	 78974078	-	lnc-AC127496.3-4	lnc-AC127496.3-4:2	ENSG00000263218.1	CTD-2561B21.7	CHMP6	NA	chr17:78965641-78973933	inner
LNCA_21_P0007352	2.8262255	A	3.888525	P	0.478868186914782	0	lncRNA	TCONS_00019635	NA	NA	NA	NA	XLOC_009437	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009437), lincRNA [TCONS_00019635]"	chr11:46292157-46278075	hs|11p11.2	Agilent_HUMAN_G3V2	TCONS_00019635	TCONS_00019635	chr11	 46278075	 46292157	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42473_PI429285431	1.6403778	A	1.8350703	A	0.87375911149761	0	lncRNA	45230-1_{1..75}	ENST00000363962 ncrna:snoRNA chromosome:GRCh37:14:101420711:101420785:1 gene:ENSG00000200832 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363962 ncrna:snoRNA chromosome:GRCh37:14:101420711:101420785:1 gene:ENSG00000200832 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101420711	101420785	+	ENSG00000200832	ENST00000363962	NA	NA	NA	NA	NA	inter
CUST_32117_PI429285431	0.9076829	A	0.9147159	A	0.995136958939294	0	lncRNA	33818-1_{1..332}	n338682|AF086407|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1099|NULL|-1.1938000|-0.4152513	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338682|AF086407|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1099|NULL|-1.1938000|-0.4152513	chr2	 14779846	 14780177	+	NA	NA	NA	NA	FAM84A	NA	chr2:14772810-14780170	inner
LNCA_21_P0003966	7.796837	P	7.891589	P	0.936433206936805	0	lncRNA	TCONS_00009346	NA	NA	NA	NA	XLOC_004283	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004283), lincRNA [TCONS_00009346]"	chr5:8052037-8052096	hs|5p15.31	Agilent_HUMAN_G3V2	TCONS_00009346	TCONS_00009346	chr5	  8052037	  8052096	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009991	4.4504695	P	5.0574446	P	0.656571894628129	0	lncRNA	TCONS_00028265	NA	NA	NA	NA	XLOC_013612	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013612), lincRNA [TCONS_00028265]"	chr20:62032678-62032737	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028265	TCONS_00028265	chr20	 62032678	 62032737	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30339_PI429285431	0.9083649	A	1.333703	A	0.744664196776281	0	lncRNA	32115-1_{1..337}	n335263|AY605092|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255730|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255730|2.5886900|-0.2601754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335263|AY605092|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255730|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255730|2.5886900|-0.2601754	chr21	 35247664	 35248000	+	NA	NA	NA	NA	ITSN1	NA	chr21:35237664-35261609	inner
CUST_22260_PI429285431	4.5741763	P	4.5092773	P	1.04601170818246	0	lncRNA	23861-1_{1..740}	lnc-ATXN7-7:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATXN7-7:4	chr3	 64572493	 64573232	+	lnc-ATXN7-7	lnc-ATXN7-7:4	ENSG00000241158.1	ADAMTS9-AS1	ADAMTS9	"hg19_refFlat_ADAMTS9:range=chr3:64507847-646733335'pad=0,hg19_refFlat_ADAMTS9:range=chr3:64507847-646733335'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00chr3:64562493-64582891"	NA	inner
LNCA_21_P0003068	0.90367216	A	0.9251386	A	0.985230748939414	0	lncRNA	TCONS_00006330	NA	NA	NA	NA	XLOC_002949	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002949), lincRNA [TCONS_00006330]"	chr3:184119448-184144427	hs|3q27.1	Agilent_HUMAN_G3V2	TCONS_00006330	TCONS_00006330	chr3	184119448	184144427	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3503_PI429285431	0.9222246	A	1.3803442	A	0.727934425940999	0	lncRNA	3474-1_{1..551}	"transcript_id ""ENST00000605043.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605043.1"" | genecode_v17"	chr9	102136636	102137186	-	ENSG00000271086.1	ENST00000605043.1	RP11-13B9.5	RP11-13B9.5-004	NA	NA	NA	inter
CUST_44964_PI429285431	2.8875542	A	3.0799117	A	0.875174434494739	0	lncRNA	49475-1_{1..2200}	"gi|397139213|ref|XR_108826.3| PREDICTED: Homo sapiens uncharacterized LOC644794 (LOC644794), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139213|ref|XR_108826.3| PREDICTED: Homo sapiens uncharacterized LOC644794 (LOC644794), misc_RNA"	NA	NA	NA	NA	NA	XR_108826.3	NA	NA	NA	NA	NA	Unknown
CUST_2235_PI429285431	1.1049685	A	0.92942417	A	1.12939044435213	0	lncRNA	2227-1_{1..592}	"transcript_id ""ENST00000511417.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000511417.1"" | genecode_v17"	chr5	 87008952	 87009543	-	ENSG00000248708.1	ENST00000511417.1	CTD-2316B1.2	CTD-2316B1.2-001	NA	NA	NA	inter
CUST_38953_PI429285431	1.8252485	A	0.906293	A	1.89074591245071	0	lncRNA	39939-1_{1..1650}	n385125|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tdv.1||-0.9010640|-0.2315605	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385125|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tdv.1||-0.9010640|-0.2315605	chr7	 33923727	 33925376	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22193_PI429285431	5.0320244	P	5.595775	P	0.676541059683221	0	lncRNA	23793-1_{1..804}	lnc-CALCOCO2-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALCOCO2-8:2	chr17	 46628386	 46629189	+	lnc-CALCOCO2-8	lnc-CALCOCO2-8:2	ENSG00000230148.4	HOXB-AS1	HOXB3	"hg19_refFlat_HOXA3:range=chr7:27147534-271502595'pad=0,hg19_refFlat_HOXA3:range=chr7:27147534-271502595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_HOXB3:range=chr17:46627696-466298365'pad=0,hg19_refFlat_HOXB3:range=chr17:46627696-466298365'pad=0 3'pad=0 strand=- repeatMasking=none,-110.90chr17:46626232-46638610"	NA	inner
CUST_32714_PI429285431	8.459261	P	8.418025	P	1.02899501994599	0	lncRNA	34357-1_{1..1302}	n339345|CR607009|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1777|NULL|1.0020700|-0.1115133	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339345|CR607009|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1777|NULL|1.0020700|-0.1115133	chr16	 89724457	 89725758	+	NA	NA	NA	NA	C16orf55	NA	chr16:89724210-89737675	inner
LNCA_21_P0014343	4.728785	P	5.0321455	P	0.810362601534594	0	lncRNA	XR_109370	XR_109370	XR_109370	NA	NA	LOC100507069	uncharacterized LOC100507069	NA	THC2640228	NA	"PREDICTED: Homo sapiens hypothetical LOC100507069 (LOC100507069), miscRNA [XR_109370]"	chr17:15552383-15552442	hs|17p12	Agilent_HUMAN_G3V2	XR_109370	XR_109370	chr17	 15552383	 15552442	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1526_PI429285431	0.91091627	A	0.9247165	A	0.990480014217471	0	lncRNA	1513-1_{1..836}	"transcript_id ""ENST00000492553.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000492553.1"" | genecode_v17"	chr3	162917365	162918200	-	ENSG00000241369.1	ENST00000492553.1	CT64	CT64-004	NA	NA	NA	inter
LNCA_21_P0006861	0.9045774	A	0.92577094	A	0.985417132683049	0	lncRNA	TCONS_00018174	NA	NA	NA	NA	XLOC_008466	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008466), lincRNA [TCONS_00018174]"	chr10:43823358-43823417	hs|10q11.21	Agilent_HUMAN_G3V2	TCONS_00018174	TCONS_00018174	chr10	 43823358	 43823417	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47513_PI429285431	10.712671	P	10.883506	P	0.888328387515151	0	lncRNA	51524-1_{1..2425}	"gi|209180451|ref|NR_024194.1| Homo sapiens target of myb1 (chicken) (TOM1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209180451|ref|NR_024194.1| Homo sapiens target of myb1 (chicken) (TOM1), transcript variant 5, non-coding RNA"	Chr22	 35695797	 35698221	+	10043	NR_024194.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0009390	4.4785624	P	3.8596754	P	1.53568998110391	0	lncRNA	TCONS_00025420	NA	NA	NA	NA	XLOC_012229	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012229), lincRNA [TCONS_00025420]"	chr17:47316476-47316535	hs|17q21.32	Agilent_HUMAN_G3V2	TCONS_00025420	TCONS_00025420	chr17	 47316476	 47316535	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29325_PI429285431	5.2125235	P	5.5252542	P	0.805116410276326	0	lncRNA	31076-1_{1..327}	n332534|BC150589|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000435912|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000435912|1.4029200|-0.1024887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332534|BC150589|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000435912|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000435912|1.4029200|-0.1024887	chr3	 23952910	 23953236	+	NA	NA	NA	NA	NKIRAS1	NA	chr3:23942910-23958537	inner
CUST_32981_PI429285431	1.5154636	A	3.0164423	A	0.353313627266915	0	lncRNA	34597-1_{1..1509}	n339659|BC038760|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2103|NULL|-0.6286820|-0.2514202	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n339659|BC038760|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2103|NULL|-0.6286820|-0.2514202	chr3	156799629	156801137	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38506_PI429285431	0.90068936	A	0.91695863	A	0.988786348373819	0	lncRNA	39519-1_{1..3000}	n383068|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gqr.1||3.2065800|-0.1278350	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383068|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gqr.1||3.2065800|-0.1278350	chr17	 16826228	 16829227	-	NA	NA	NA	NA	TNFRSF13B	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-58.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80chr17:16842398-16848153"	NA	inter
CUST_4034_PI429285431	1.7638519	A	1.1771725	A	1.50178615845219	0	lncRNA	3996-1_{1..340}	"transcript_id ""ENST00000533528.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533528.1"" | genecode_v17"	chr11	 82783146	 82783485	+	ENSG00000246067.2	ENST00000533528.1	RP11-113K21.5	RP11-113K21.5-004	RAB30	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40chr11:82773146-82782884"	NA	inter
CUST_4620_PI429285431	0.92103595	A	1.2359767	A	0.803884004753656	0	lncRNA	4566-1_{1..647}	"transcript_id ""ENST00000598084.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598084.1"" | genecode_v17"	chr13	 47029504	 47030150	-	ENSG00000231817.2	ENST00000598084.1	RP11-189B4.6	RP11-189B4.6-009	LOC731932	NA	chr13:47019504-47035198	inter
LNCA_21_P0004956	0.88722426	A	0.90195197	A	0.989843458916611	0	lncRNA	TCONS_00011988	NA	NA	NA	NA	XLOC_005502	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005502), lincRNA [TCONS_00011988]"	chr6:150612148-150615920	hs|6q25.1	Agilent_HUMAN_G3V2	TCONS_00011988	TCONS_00011988	chr6	150612148	150615920	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26928_PI429285431	2.505103	A	2.5485222	A	0.970352476105285	0	lncRNA	28447-1_{1..606}	n324006|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053496|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053496|-1.1915400|-0.4475631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324006|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053496|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053496|-1.1915400|-0.4475631	chr9	106792897	106793502	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28284_PI429285431	2.2185295	A	3.2470472	P	0.490213561069162	0	lncRNA	29920-1_{1..2766}	n325579|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129946|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129946|0.4153410|-0.3854716	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325579|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129946|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129946|0.4153410|-0.3854716	chr17	 12394010	 12396775	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30"	NA	inter
CUST_37634_PI429285431	3.9863536	P	4.5673685	P	0.668493343539198	0	lncRNA	38729-1_{1..341}	n346111|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1661|NULL|-1.2805300|-0.1456202	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346111|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1661|NULL|-1.2805300|-0.1456202	chr8	 17767875	 17768215	+	NA	NA	NA	NA	PCM1	NA	chr8:17780366-17781043	inter
LNCA_21_P0009446	0.87853944	A	1.3926535	A	0.700222798383446	0	lncRNA	THC2750697	NA	NA	NA	NA	XLOC_012616	NA	NA	THC2750697	NA	"BROAD Institute lincRNA (XLOC_012616), lincRNA [TCONS_00026263]"	chr18:005793698-005793757	hs|18p11.31	Agilent_HUMAN_G3V2	THC2750697	THC2750697	chr18	  5793698	  5793757	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24778_PI429285431	2.0195162	A	3.2350605	P	0.430610588438279	0	lncRNA	26321-1_{1..570}	lnc-AGGF1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGGF1-3:4	chr5	 76443477	 76444046	+	lnc-AGGF1-3	lnc-AGGF1-3:4	ENSG00000250802.2	CTC-564N23.3	NA	NA	NA	inter
CUST_43996_PI429285431	0.8956476	A	0.8932711	A	1.00164862175967	0	lncRNA	48692-2_{3001..6000}	"gi|365733614|ref|NR_045682.1| Homo sapiens myosin IIIB (MYO3B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|365733614|ref|NR_045682.1| Homo sapiens myosin IIIB (MYO3B), transcript variant 3, non-coding RNA"	Chr2	171037655	171040654	+	140469	NR_045682.1	NA	NA	NA	"hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40"	NA	inter
CUST_48238_PI429285431	3.8016858	P	3.8162208	P	0.989975687466762	0	lncRNA	52100-1_{1..975}	hg19_lincRNAsTranscripts_TCONS_l2_00000782 range=chr1:207352622-207357525 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000782 range=chr1:207352622-207357525 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	207352622	207353596	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004472	0.87566495	A	0.88101184	A	0.996300677686542	0	lncRNA	TCONS_00010561	NA	NA	NA	NA	XLOC_005087	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005087), lincRNA [TCONS_00010561]"	chr5:173135479-173135420	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_00010561	TCONS_00010561	chr5	173135420	173135479	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003692	3.1782908	P	0.8793624	A	4.92092115088449	0	lncRNA	TCONS_00008366	NA	NA	NA	NA	XLOC_003820	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003820), lincRNA [TCONS_00008366]"	chr4:186939995-186940054	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00008366	TCONS_00008366	chr4	186939995	186940054	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9715_PI429285431	5.6398916	P	5.6893954	P	0.966268609848393	0	lncRNA	11231-1_{1..302}	lnc-MRM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRM1-1:1	chr17	 35039933	 35040234	+	lnc-MRM1-1	lnc-MRM1-1:1	XLOC_012183	linc-LHX1-2	NA	NA	NA	inter
LNCA_21_P0000995	2.596849	A	0.8766054	A	3.29492037155988	0	lncRNA	ENST00000439455	NA	NA	NA	NA	XLOC_000299	NA	ENST00000439455	NA	NA	"BROAD Institute lincRNA (XLOC_000299), lincRNA [TCONS_00000247]"	chr1:94611116-94611175	hs|1p22.1	Agilent_HUMAN_G3V2	ENST00000439455	ENST00000439455	chr1	 94611116	 94611175	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34519_PI429285431	4.1273313	P	4.216769	P	0.939889005833232	0	lncRNA	35983-1_{1..824}	n341398|AF339771|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3867|NULL|-1.1739200|-0.2676618	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341398|AF339771|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3867|NULL|-1.1739200|-0.2676618	chr13	 99740072	 99740895	+	NA	NA	NA	NA	DOCK9	NA	chr13:99730072-99738660	inter
CUST_26282_PI429285431	3.224713	P	2.6615536	A	1.47750130022674	0	lncRNA	27788-1_{1..474}	lnc-KIAA1147-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1147-3:1	chr7	141250944	141251417	-	lnc-KIAA1147-3	lnc-KIAA1147-3:1	ENSG00000261570.1	RP11-744I24.2	AGK	NA	chr7:141251078-141261104	inner
LNCA_21_P0006233	2.0678773	A	0.87361515	A	2.28827770821907	0	lncRNA	TCONS_00016200	NA	NA	NA	NA	XLOC_007590	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007590), lincRNA [TCONS_00016200]"	chr9:134163329-134163388	hs|9q34.13	Agilent_HUMAN_G3V2	TCONS_00016200	TCONS_00016200	chr9	134163329	134163388	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5030_PI429285431	4.155257	P	4.494791	P	0.790296541628661	0	lncRNA	4970-1_{1..742}	"transcript_id ""ENST00000554016.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554016.1"" | genecode_v17"	chr14	101536790	101537531	+	ENSG00000223403.3	ENST00000554016.1	MEG9	MEG9-004	NA	NA	NA	inter
CUST_29957_PI429285431	1.0625937	A	0.8767076	A	1.13751541809494	0	lncRNA	31723-1_{1..408}	n334163|M97720|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196983|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196983|1.5400300|-0.1400399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334163|M97720|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196983|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196983|1.5400300|-0.1400399	chr14	 22538967	 22539374	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48212_PI429285431	0.88541436	A	1.1195753	A	0.850179312929527	0	lncRNA	52075-1_{1..560}	hg19_lincRNAsTranscripts_TCONS_l2_00000308 range=chr1:59486106-59510386 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000308 range=chr1:59486106-59510386 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 59486106	 59486665	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014514	8.281364	P	9.122131	P	0.558346648532326	0	lncRNA	XR_110171	XR_110171	XR_110171	NA	Hs.720521	LOC100131774	uncharacterized LOC100131774	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100131774 (LOC100131774), miscRNA [XR_110171]"	chr6:132269645-132269704	hs|6q23.2	Agilent_HUMAN_G3V2	XR_110171	XR_110171	chr6	132269645	132269704	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007924	7.536132	P	7.7636313	P	0.854114090763944	0	lncRNA	ENST00000414345	NA	NA	NA	NA	XLOC_010308	NA	ENST00000414345	NA	NA	"BROAD Institute lincRNA (XLOC_010308), lincRNA [TCONS_00021529]"	chr13:23744177-23744735	hs|13q12.12	Agilent_HUMAN_G3V2	ENST00000414345	ENST00000414345	chr13	 23744177	 23744735	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_259_PI429285431	0.8775945	A	0.8732358	A	1.00302578910256	0	lncRNA	251-1_{1..355}	"transcript_id ""ENST00000420285.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420285.1"" | genecode_v17"	chr1	 63466168	 63466522	-	ENSG00000229537.1	ENST00000420285.1	RP11-5P4.1	RP11-5P4.1-003	NA	NA	NA	inter
CUST_1485_PI429285431	5.6519456	P	5.8198123	P	0.890157976951503	0	lncRNA	1472-1_{1..391}	"transcript_id ""ENST00000490465.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000490465.1"" | genecode_v17"	chr3	147795946	147796336	+	ENSG00000241131.1	ENST00000490465.1	RP11-639B1.1	RP11-639B1.1-001	NA	NA	NA	inter
CUST_18990_PI429285431	1.7767786	A	2.281345	A	0.704872194102278	0	lncRNA	20682-1_{1..3000}	lnc-HSCB-1:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HSCB-1:18	chr22	 28402517	 28405516	+	lnc-HSCB-1	lnc-HSCB-1:18	ENSG00000235954	TTC28-AS1	TTC28	"hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0,hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0 3'pad=0 strand=- repeatMasking=none,-103.70chr22:28392517-28414569"	NA	inner
CUST_15955_PI429285431	2.7583702	A	2.1777272	A	1.49551564192607	0	lncRNA	17652-1_{1..1373}	lnc-C1orf200-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf200-4:2	chr1	  9485723	  9487095	-	lnc-C1orf200-4	lnc-C1orf200-4:2	XLOC_000697	linc-GPR157-3	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40"	NA	inter
CUST_19025_PI429285431	6.3235817	P	7.115076	P	0.577745370711961	0	lncRNA	20715-1_{1..1161}	lnc-NKX2-4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NKX2-4-1:1	chr20	 21198785	 21199945	-	lnc-NKX2-4-1	lnc-NKX2-4-1:1	ENSG00000232712	RP4-777D9.2	PLK1S1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80chr20:21188785-21208927"	NA	inner
LNCA_21_P0014191	0.87502766	A	0.874141	A	1.00061477477571	0	lncRNA	ENST00000448131	XR_108785	XR_108785	NA	Hs.667432	LOC100507538	NA	ENST00000448131	THC2602715	NA	"PREDICTED: Homo sapiens hypothetical LOC100507538 (LOC100507538), miscRNA [XR_108785]"	chr7:147370168-147370227	hs|7q35	Agilent_HUMAN_G3V2	ENST00000448131	ENST00000448131	chr7	147370168	147370227	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30481_PI429285431	11.280893	P	12.230994	P	0.517596224845507	0	lncRNA	32261-1_{1..662}	n335630|CR603613|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000282808|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000282808|-0.9294260|-0.1200423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335630|CR603613|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000282808|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000282808|-0.9294260|-0.1200423	chr12	 57488594	 57489255	+	NA	NA	NA	NA	STAT6	NA	chr12:57489187-57499256	inner
LNCA_21_P0006550	2.6543136	A	0.8748069	A	3.43308767107193	0	lncRNA	TCONS_00017372	NA	NA	NA	NA	XLOC_008237	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008237), lincRNA [TCONS_00017372]"	chrX:130826820-130826761	hs|Xq26.2	Agilent_HUMAN_G3V2	TCONS_00017372	TCONS_00017372	chrX	130826761	130826820	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49577_PI429285431	6.8067155	P	7.040832	P	0.850205501797936	0	lncRNA	53366-1_{1..341}	hg19_lincRNAsTranscripts_TCONS_l2_00024930 range=chr6:134851906-134861080 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024930 range=chr6:134851906-134861080 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	134851906	134852246	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22066_PI429285431	1.9229004	A	1.0412217	A	1.84251798285718	0	lncRNA	23672-1_{1..892}	lnc-OTUD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OTUD1-1:1	chr10	 23633353	 23634244	+	lnc-OTUD1-1	lnc-OTUD1-1:1	ENSG00000224215.1	RP11-371A19.2	C10orf67	"hg19_refFlat_C10orf67:range=chr10:23607839-236337065'pad=0,hg19_refFlat_C10orf67:range=chr10:23607839-236337065'pad=0 3'pad=0 strand=- repeatMasking=none,-97.00chr10:23623353-23633772"	NA	inner
CUST_6908_PI429285431	4.7460265	P	4.765299	P	0.986730152119882	0	lncRNA	6858-1_{1..586}	"transcript_id ""ENST00000424770.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424770.1"" | genecode_v17"	chr22	 16062157	 16062742	+	ENSG00000233866.1	ENST00000424770.1	LA16c-4G1.3	LA16c-4G1.3-001	NA	"hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40"	NA	inter
CUST_11731_PI429285431	4.378071	P	4.4825745	P	0.930124987797751	0	lncRNA	13311-1_{1..1624}	lnc-CXXC5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CXXC5-1:2	chr5	139125486	139127109	+	lnc-CXXC5-1	lnc-CXXC5-1:2	XLOC_004573	linc-PSD2-2	NA	NA	NA	inter
CUST_47250_PI429285431	2.1132245	A	1.9095515	A	1.15162658608725	0	lncRNA	51322-1_{1..1224}	"gi|338968855|ref|NR_040095.1| Homo sapiens uncharacterized LOC284801 (LOC284801), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338968855|ref|NR_040095.1| Homo sapiens uncharacterized LOC284801 (LOC284801), non-coding RNA"	Chr20	 26167655	 26168878	-	284801	NR_040095.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0007433	4.3207774	P	4.6465025	P	0.797897261584208	0	lncRNA	TCONS_00019268	NA	NA	NA	NA	XLOC_009097	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009097), lincRNA [TCONS_00019268]"	chr11:29652164-29652223	hs|11p14.1	Agilent_HUMAN_G3V2	TCONS_00019268	TCONS_00019268	chr11	 29652164	 29652223	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009864	5.9178014	P	6.0483546	P	0.913481109628277	0	lncRNA	ENST00000442780	NA	NA	NA	NA	XLOC_013581	NA	ENST00000442780	THC2740045	NA	"BROAD Institute lincRNA (XLOC_013581), lincRNA [TCONS_00027960]"	chr20:55682125-55682184	hs|20q13.31	Agilent_HUMAN_G3V2	ENST00000442780	ENST00000442780	chr20	 55682125	 55682184	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48938_PI429285431	0.8879247	A	0.8933573	A	0.99624148957531	0	lncRNA	52780-1_{1..274}	hg19_lincRNAsTranscripts_TCONS_l2_00018933 range=chr3:151354248-151360625 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018933 range=chr3:151354248-151360625 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	151354248	151354521	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15909_PI429285431	3.3219965	P	2.6784084	A	1.56220967436411	0	lncRNA	17603-1_{1..577}	lnc-MYC-2:30	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYC-2:30	chr8	129113226	129113802	+	lnc-MYC-2	lnc-MYC-2:30	XLOC_006925	linc-EFR3A-4	NA	NA	NA	inter
CUST_48144_PI429285431	0.8866507	A	1.2194419	A	0.793998837378285	0	lncRNA	52011-1_{1..2388}	"gi|310110499|ref|XR_111377.1| PREDICTED: Homo sapiens FRY antisense RNA 1 (FRY-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310110499|ref|XR_111377.1| PREDICTED: Homo sapiens FRY antisense RNA 1 (FRY-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_111377.1	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00"	NA	Unknown
LNCA_21_P0011369	0.86804837	A	0.8683608	A	0.999783463473796	0	lncRNA	TCONS_l2_00009007	NA	NA	NA	NA	XLOC_l2_004870	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004870), lincRNA [TCONS_l2_00009007]"	chr15:33598567-33598508	hs|15q13.3	Agilent_HUMAN_G3V2	TCONS_l2_00009007	TCONS_l2_00009007	chr15	 33598508	 33598567	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42007_PI429285431	6.3806777	P	6.4260836	P	0.969017147116004	0	lncRNA	43851-1_{1..66}	ENST00000578353 ncrna:miRNA chromosome:GRCh37:6:41566461:41566526:1 gene:ENSG00000266494 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578353 ncrna:miRNA chromosome:GRCh37:6:41566461:41566526:1 gene:ENSG00000266494 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 41566461	 41566526	+	ENSG00000266494	ENST00000578353	NA	NA	FOXP4	NA	chr6:41556461-41570122	inner
LNCA_21_P0013022	3.9354753	P	1.5338424	A	5.28400891260919	0	lncRNA	TCONS_l2_00024192	NA	NA	NA	NA	XLOC_l2_012518	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012518), lincRNA [TCONS_l2_00024192]"	chr6:35511479-35512647	hs|6p21.31	Agilent_HUMAN_G3V2	TCONS_l2_00024192	TCONS_l2_00024192	chr6	 35511479	 35512647	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011151	0.90850294	A	0.93065464	A	0.984762889212708	0	lncRNA	ENST00000414743	NA	NA	NA	NA	XLOC_l2_003792	NA	ENST00000414743	THC2747663	NA	"BROAD Institute lincRNA (XLOC_l2_003792), lincRNA [TCONS_l2_00006932]"	chr13:78606086-78611354	hs|13q22.3	Agilent_HUMAN_G3V2	ENST00000414743	ENST00000414743	chr13	 78606086	 78611354	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7029_PI429285431	5.68651	P	5.902819	P	0.86076480785387	0	lncRNA	6975-2_{3001..6000}	"transcript_id ""ENST00000449605.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449605.1"" | genecode_v17"	chrX	 21914718	 21917717	+	ENSG00000231771.1	ENST00000449605.1	RP11-147O5.1	RP11-147O5.1-001	MBTPS2	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chrX:21901718-21903541"	NA	inter
CUST_43293_PI429285431	0.90801585	A	1.2152232	A	0.808204701990326	0	lncRNA	48111-2_{3001..3897}	ENST00000603037 havana:sense_intronic chromosome:GRCh37:X:73420064:73461983:-1 gene:ENSG00000271430 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"NONCODERv3,ensembl.GRCh37.72,"	>ENST00000603037 havana:sense_intronic chromosome:GRCh37:X:73420064:73461983:-1 gene:ENSG00000271430 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chrX	 73423064	 73423960	-	ENSG00000271430	ENST00000603037	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70"	NA	inter
CUST_39802_PI429285431	2.7561965	P	2.8506088	A	0.936653727424721	0	lncRNA	40711-1_{1..1519}	n406202|NR_003663|lncRNA|Homosapiens||RefGeneNoncode|NR_003663||3.1972400|-0.2464136	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406202|NR_003663|lncRNA|Homosapiens||RefGeneNoncode|NR_003663||3.1972400|-0.2464136	chr2	 84517805	 84519323	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43989_PI429285431	5.1054897	P	5.1144614	P	0.993800587588486	0	lncRNA	48688-1_{1..1590}	"gi|410170449|ref|XR_108434.3| PREDICTED: Homo sapiens uncharacterized LOC643072 (LOC643072), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410170449|ref|XR_108434.3| PREDICTED: Homo sapiens uncharacterized LOC643072 (LOC643072), misc_RNA"	Chr2	160471809	160473398	+	643072	XR_108434.4	NA	NA	NA	NA	NA	inter
CUST_31606_PI429285431	6.12478	P	6.440705	P	0.803335757915199	0	lncRNA	33362-1_{1..1561}	n338119|AL357535|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|507|NULL|-0.9501650|-0.1876130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338119|AL357535|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|507|NULL|-0.9501650|-0.1876130	chr15	 90291891	 90293451	-	NA	NA	NA	NA	MESP2	NA	chr15:90295575-90303432	inner
LNCA_21_P0008648	0.8948377	A	3.8784935	P	0.126424168946068	0	lncRNA	THC2613233	NA	NA	NA	NA	XLOC_011294	NA	NA	THC2613233	NA	"BROAD Institute lincRNA (XLOC_011294), lincRNA [TCONS_00023449]"	NA	NA	Agilent_HUMAN_G3V2	THC2613233	THC2613233	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25954_PI429285431	0.9194712	A	0.9116718	A	1.00542077162145	0	lncRNA	27474-1_{1..688}	lnc-CHSY1-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHSY1-5:4	chr15	101459009	101459696	-	lnc-CHSY1-5	lnc-CHSY1-5:4	ENSG00000259583.1	RP11-66B24.4	LRRK1	NA	chr15:101459460-101469046	inter
CUST_32346_PI429285431	8.282337	P	10.183065	P	0.267808192532685	0	lncRNA	34026-1_{1..621}	n338927|BC014368|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1353|NULL|-1.1251000|-0.2735750	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338927|BC014368|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1353|NULL|-1.1251000|-0.2735750	chr2	105028609	105029229	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37955_PI429285431	0.8998392	A	0.9048395	A	0.996540055603167	0	lncRNA	39045-1_{1..668}	n346504|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2054|NULL|-1.3462500|-0.1921942	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346504|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2054|NULL|-1.3462500|-0.1921942	chr5	 45749056	 45749723	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007543	0.88419145	A	0.8969675	A	0.991183413032245	0	lncRNA	TCONS_00020384	NA	NA	NA	NA	XLOC_009715	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009715), lincRNA [TCONS_00020384]"	chr12:43081064-43101600	hs|12q12	Agilent_HUMAN_G3V2	TCONS_00020384	TCONS_00020384	chr12	 43081064	 43101600	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44042_PI429285431	4.6648083	P	4.360579	P	1.23475884220004	0	lncRNA	48721-2_{3001..5365}	"gi|166235160|ref|NR_004862.1| Homo sapiens tRNA-yW synthesizing protein 5 (TYW5), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|166235160|ref|NR_004862.1| Homo sapiens tRNA-yW synthesizing protein 5 (TYW5), transcript variant 2, non-coding RNA"	Chr2	200796634	200798998	-	129450	NR_004862.1	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70"	NA	inter
LNCA_21_P0005356	1.7744417	A	1.7512689	A	1.01619185092995	0	lncRNA	TCONS_00013351	NA	NA	NA	NA	XLOC_005991	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005991), lincRNA [TCONS_00013351]"	chr7:15736062-15736121	hs|7p21.2	Agilent_HUMAN_G3V2	TCONS_00013351	TCONS_00013351	chr7	 15736062	 15736121	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00316622	1.6201624	A	2.4146013	A	0.576567371195946	0	lncRNA	TCONS_00026377	NA	NA	NA	NA	XLOC_012727	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012727), lincRNA [TCONS_00026377]"	chr18:74322803-74322862	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026377	TCONS_00026377	chr18	 74322803	 74322862	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41744_PI429285431	1.133334	A	1.8855149	A	0.59370538345821	0	lncRNA	43283-1_{1..69}	ENST00000584576 ncrna:miRNA chromosome:GRCh37:18:46196971:46197039:1 gene:ENSG00000266276 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584576 ncrna:miRNA chromosome:GRCh37:18:46196971:46197039:1 gene:ENSG00000266276 gene_biotype:miRNA transcript_biotype:miRNA	chr18	 46196971	 46197039	+	ENSG00000266276	ENST00000584576	NA	NA	CTIF	NA	chr18:46186971-46207039	inner
CUST_96_PI429201921	0.8836629	A	0.8945813	A	0.992460507468475	0	lncRNA	99-1_{1..2783}	TC16001891.hg.1	 TCONS_00025005-XLOC_011941 // Rinn lincRNAs // linc-SALL1-2 chr16:-:52116983-52118482 // chr16 // 100 // 100 // 0 // --- // 0///TCONS_00024269-XLOC_011941 // Rinn lincRNAs // linc-SALL1-2 chr16:-:52116976-52119021 // chr16 // 100 // 100 // 0 // --- // 0 /// TCONS_00025006-XLOC_011941 // Rinn lincRNAs // linc-SALL1-2 chr16:-:52116983-52119059 // chr16 // 100 // 100 // 0 // --- // 0 /// TCONS_00025007-XLOC_011941 // Rinn lincRNAs // linc-SALL1-2 chr16:-:52116983-52119760 // chr16 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr16:-:52116976-52119021	NA	Affy_HUMAN_HTA2.0	TCONS_00024269-XLOC_011941	linc-SALL1-2	chr16	 52116976	 52119021	-	NA	NA	NA	NA	LOC100288646	NA	chr1:327463-342507	Unknown
CUST_49892_PI429285431	4.0410857	P	3.339121	P	1.62671859307146	0	lncRNA	53641-1_{1..1354}	hg19_lincRNAsTranscripts_TCONS_l2_00026703 range=chr7:76692442-76751608 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026703 range=chr7:76692442-76751608 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 76692442	 76693795	-	NA	NA	NA	NA	CCDC146	NA	chr7:76744671-76761608	inter
CUST_38169_PI429285431	5.3964853	P	4.724496	P	1.59326837577388	0	lncRNA	39240-1_{1..919}	n381422|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001iwf.2||-0.9500570|-0.2513603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381422|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001iwf.2||-0.9500570|-0.2513603	chr10	 32556714	 32557632	-	NA	NA	NA	NA	EPC1	NA	chr10:32557859-32567633	inter
CUST_33003_PI429285431	0.8981655	A	0.9073998	A	0.993619712020731	0	lncRNA	34618-1_{1..3000}	n339685|BC042089|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2130|NULL|0.2961870|-0.2604227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339685|BC042089|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2130|NULL|0.2961870|-0.2604227	chr3	170374350	170377349	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40552_PI429285431	2.9800956	P	2.3902977	A	1.50503589962109	0	lncRNA	41310-1_{1..713}	n409700|NR_034101|lncRNA|Homosapiens||RefGeneNoncode|NR_034101||-0.3929240|-0.1862504	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n409700|NR_034101|lncRNA|Homosapiens||RefGeneNoncode|NR_034101||-0.3929240|-0.1862504	chr11	113140253	113140965	-	NA	NA	NA	NA	NCAM1	"hg19_refFlat_NCAM1:range=chr11:112832334-1131461095'pad=0,hg19_refFlat_NCAM1:range=chr11:112832334-1131461095'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.30chr11:113130253-113149158"	NA	inner
CUST_44239_PI429285431	4.674886	P	1.4741642	A	9.1941856659034	0	lncRNA	48887-2_{3001..5641}	"gi|290558672|ref|NR_033361.1| Homo sapiens transmembrane and coiled-coil domain family 1 (TMCC1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|290558672|ref|NR_033361.1| Homo sapiens transmembrane and coiled-coil domain family 1 (TMCC1), transcript variant 4, non-coding RNA"	Chr3	129369635	129372275	-	23023	NR_033361.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0005361	7.791855	P	7.93099	P	0.908063441827813	0	lncRNA	TCONS_00013378	NA	NA	NA	NA	XLOC_006010	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006010), lincRNA [TCONS_00013378]"	chr7:22874160-22874219	hs|7p15.3	Agilent_HUMAN_G3V2	TCONS_00013378	TCONS_00013378	chr7	 22874160	 22874219	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38050_PI429285431	8.285614	P	8.530071	P	0.84413345038267	0	lncRNA	39129-1_{1..3000}	n377623|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030010||0.5272400|-0.2669228	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377623|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030010||0.5272400|-0.2669228	chr6	  2356965	  2359964	+	NA	NA	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20"	NA	inter
CUST_50618_PI429285431	6.964292	P	7.1188707	P	0.898394686409402	0	lncRNA	54303-1_{1..1113}	hg19_lincRNAsTranscripts_TCONS_l2_00002856 range=chr10:5667061-5668697 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002856 range=chr10:5667061-5668697 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	  5667061	  5668173	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25883_PI429285431	4.950481	P	5.3398924	P	0.76344101452482	0	lncRNA	27403-1_{1..375}	lnc-KCNC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNC2-1:1	chr12	 74932370	 74932744	-	lnc-KCNC2-1	lnc-KCNC2-1:1	ENSG00000257386.1	RP11-56G10.2	ATXN7L3B	"hg19_refFlat_ATXN7L3B:range=chr12:74931893-749321865'pad=0,hg19_refFlat_ATXN7L3B:range=chr12:74931893-749321865'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.30;hg19_refFlat_ATXN7L3:range=chr17:42271631-422754385'pad=0,hg19_refFlat_ATXN7L3:range=chr17:42271631-422754385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60chr12:74931551-74935232"	NA	inner
CUST_44910_PI429285431	7.199377	P	7.1261215	P	1.05208808656408	0	lncRNA	49427-1_{1..1051}	"gi|315360616|ref|NR_037669.1| Homo sapiens gamma-glutamylcyclotransferase (GGCT), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315360616|ref|NR_037669.1| Homo sapiens gamma-glutamylcyclotransferase (GGCT), transcript variant 5, non-coding RNA"	Chr7	 30536237	 30537287	-	79017	NR_037669.1	NA	NA	NA	NA	NA	inter
CUST_19549_PI429285431	1.8051519	A	3.051241	A	0.42158951719958	0	lncRNA	21205-1_{1..625}	lnc-WDR37-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR37-2:2	chr10	  1577787	  1578411	+	lnc-WDR37-2	lnc-WDR37-2:2	ENSG00000205696.4	ADARB2-AS1	ADARB2	NA	chr10:1567787-1587868	inter
LNCA_21_P0012141	0.8743708	A	0.87305886	A	1.00090978111206	0	lncRNA	TCONS_l2_00016575	NA	NA	NA	NA	XLOC_l2_008841	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008841), lincRNA [TCONS_l2_00016575]"	chr20:32943243-32905669	hs|20q11.22	Agilent_HUMAN_G3V2	TCONS_l2_00016575	TCONS_l2_00016575	chr20	 32905669	 32943243	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002793	0.8744619	A	0.8731815	A	1.00088789959966	0	lncRNA	ENST00000464514	NA	NA	NA	NA	XLOC_002907	NA	ENST00000464514	THC2659117	NA	"BROAD Institute lincRNA (XLOC_002907), lincRNA [TCONS_00005646]"	chr3:167584246-167584305	hs|3q26.1	Agilent_HUMAN_G3V2	ENST00000464514	ENST00000464514	chr3	167584246	167584305	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003897	0.8751691	A	1.8373581	A	0.513277526626795	0	lncRNA	TCONS_00009070	NA	NA	NA	NA	XLOC_003974	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003974), lincRNA [TCONS_00009070]"	chr4:69914408-69914349	hs|4q13.2	Agilent_HUMAN_G3V2	TCONS_00009070	TCONS_00009070	chr4	 69914349	 69914408	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38406_PI429285431	4.955184	P	5.0390797	P	0.943506459465996	0	lncRNA	39438-1_{1..3000}	n382353|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yyb.3||-1.0510300|-0.2691256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n382353|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yyb.3||-1.0510300|-0.2691256	chr15	 25328542	 25331541	+	NA	NA	NA	NA	SNRPN	NA	chr15:25318542-25377621	inter
CUST_34083_PI429285431	0.8755915	A	0.8744424	A	1.0007968127119	0	lncRNA	35612-1_{1..2889}	n340908|AK097845|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3373|NULL|0.8282010|-0.2275905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340908|AK097845|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3373|NULL|0.8282010|-0.2275905	chr17	 76893345	 76896233	+	NA	NA	NA	NA	TIMP2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20chr17:76883345-76906234"	NA	inner
CUST_3405_PI429285431	1.3760873	A	1.1048714	A	1.20682450807028	0	lncRNA	3377-1_{1..759}	"transcript_id ""ENST00000593216.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593216.1"" | genecode_v17"	chr9	 42469685	 42470443	+	ENSG00000223839.3	ENST00000593216.1	FAM95B1	FAM95B1-010	CBWD7	NA	chr9:42478004-42480994	inter
CUST_7737_PI429285431	1.4114563	A	1.8270719	A	0.7496995285411	0	lncRNA	9366-1_{1..587}	lnc-SRD5A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SRD5A1-1:1	chr5	  6583716	  6584302	+	lnc-SRD5A1-1	lnc-SRD5A1-1:1	ENSG00000250056	CTD-2195M18.1	NA	NA	NA	inter
LNCA_21_P0001522	4.302373	P	3.5500975	P	1.68444754205862	0	lncRNA	TCONS_00001535	NA	NA	NA	NA	XLOC_000881	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000881), lincRNA [TCONS_00001535]"	chr1:79789401-79789342	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_00001535	TCONS_00001535	chr1	 79789342	 79789401	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009492	0.8669896	A	0.8671159	A	0.999912459343002	0	lncRNA	TCONS_00026351	NA	NA	NA	NA	XLOC_012704	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012704), lincRNA [TCONS_00026351]"	chr18:61688201-61688260	hs|18q22.1	Agilent_HUMAN_G3V2	TCONS_00026351	TCONS_00026351	chr18	 61688201	 61688260	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009331	3.8692021	P	3.922873	P	0.963481653318096	0	lncRNA	ENST00000508851	NA	NA	NA	NA	XLOC_012515	NA	ENST00000508851	THC2707471	NA	"BROAD Institute lincRNA (XLOC_012515), lincRNA [TCONS_00025694]"	chr17:48359047-48358988	hs|17q21.33	Agilent_HUMAN_G3V2	ENST00000508851	ENST00000508851	chr17	 48358988	 48359047	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20184_PI429285431	8.838888	P	8.536953	P	1.23279678108771	0	lncRNA	21828-1_{1..3000}	lnc-AC108134.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-AC108134.1-1:1	chr16	  3088309	  3091308	+	lnc-AC108134.1-1	lnc-AC108134.1-1:1	ENSG00000205890.3	RP11-473M20.5	CCDC64B	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CCDC64B:range=chr16:3078107-30854975'pad=0,hg19_refFlat_CCDC64B:range=chr16:3078107-30854975'pad=0 3'pad=0 strand=- repeatMasking=none,-105.80chr16:3078309-3085542"	NA	inter
CUST_12974_PI429285431	0.9253573	A	0.9862946	A	0.958641100444521	0	lncRNA	14600-1_{1..243}	lnc-CDKN2AIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDKN2AIP-1:1	chr4	184400107	184400349	+	lnc-CDKN2AIP-1	lnc-CDKN2AIP-1:1	XLOC_003802	linc-ING2	NA	NA	NA	inter
CUST_31100_PI429285431	0.912852	A	0.91397977	A	0.99921859486031	0	lncRNA	32891-1_{1..253}	n337381|DQ655968|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393081|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393081|0.3171580|-0.3193350	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n337381|DQ655968|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393081|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393081|0.3171580|-0.3193350	chr2	234684369	234684621	+	NA	NA	NA	NA	UGT1A10	NA	chr2:234674369-234681951	inter
CUST_31180_PI429285431	4.4215174	P	4.447493	P	0.982156206125769	0	lncRNA	32975-1_{1..546}	n337613|AB305842|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000409340|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000409340|2.5616900|-0.0864500	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337613|AB305842|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000409340|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000409340|2.5616900|-0.0864500	chr7	142510224	142510769	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38423_PI429285431	0.92081034	A	1.1615539	A	0.846309015219933	0	lncRNA	39451-2_{3001..5516}	n382509|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zqh.2||3.7403400|-0.3353605	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n382509|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zqh.2||3.7403400|-0.3353605	chr15	 42925039	 42927554	+	NA	NA	NA	NA	STARD9	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-14.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_XPNPEP3:range=chr22:41253186-412567855'pad=0,hg19_refFlat_XPNPEP3:range=chr22:41253186-412567855'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.44chr15:42912039-42975295"	NA	inner
CUST_4364_PI429285431	0.89318246	A	0.9075883	A	0.990064320878557	0	lncRNA	4318-1_{1..547}	"transcript_id ""ENST00000547370.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547370.1"" | genecode_v17"	chr12	 90276442	 90276988	+	ENSG00000258216.1	ENST00000547370.1	RP11-654D12.2	RP11-654D12.2-002	NA	NA	NA	inter
CUST_35786_PI429285431	1.2226202	A	1.0765771	A	1.10653040979999	0	lncRNA	37198-1_{1..393}	n344468|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_16|NULL|-1.5709800|-0.1809724	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344468|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_16|NULL|-1.5709800|-0.1809724	chrX	 62736789	 62737181	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26205_PI429285431	3.7274039	A	1.6369002	A	4.25896743863869	0	lncRNA	27716-1_{1..762}	lnc-BTF3L4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BTF3L4-2:1	chr1	 52509625	 52510386	+	lnc-BTF3L4-2	lnc-BTF3L4-2:1	ENSG00000223390.1	RP11-91A18.4	TXNDC12	"hg19_refFlat_KTI12:range=chr1:52498369-524994335'pad=0,hg19_refFlat_KTI12:range=chr1:52498369-524994335'pad=0 3'pad=0 strand=- repeatMasking=none,-106.50chr1:52499625-52519951"	NA	inter
CUST_27047_PI429285431	5.311409	P	5.3421125	P	0.97894282023134	0	lncRNA	28579-1_{1..832}	n324156|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051685|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051685|-0.3083630|-0.2483217	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324156|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051685|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051685|-0.3083630|-0.2483217	chr9	  6709067	  6709898	+	NA	NA	NA	NA	KDM4C	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70chr9:6699067-6727438"	NA	inter
CUST_37657_PI429285431	1.8012279	A	1.8513713	A	0.965840322227763	0	lncRNA	38750-1_{1..1794}	n346138|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1688|NULL|-1.7686200|-0.2218392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346138|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1688|NULL|-1.7686200|-0.2218392	chr15	 89559559	 89561352	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47038_PI429285431	8.921935	P	8.785427	P	1.09924121290004	0	lncRNA	51127-1_{1..2311}	"gi|223278348|ref|NR_026708.1| Homo sapiens C-type lectin domain family 4, member M (CLEC4M), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|223278348|ref|NR_026708.1| Homo sapiens C-type lectin domain family 4, member M (CLEC4M), transcript variant 5, non-coding RNA"	Chr19	  7828035	  7830345	+	10332	NR_026708.1	NA	NA	NA	NA	NA	inter
CUST_40580_PI429285431	0.9034888	A	1.0834601	A	0.882720556362092	0	lncRNA	41332-1_{1..2042}	n410026|NR_036463|lncRNA|Homosapiens||RefGeneNoncode|NR_036463||4.4812800|-0.1459570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410026|NR_036463|lncRNA|Homosapiens||RefGeneNoncode|NR_036463||4.4812800|-0.1459570	chr8	 12272029	 12274070	-	NA	NA	NA	NA	FAM86B2	NA	chr8:12278528-12287095	inter
CUST_46082_PI429285431	2.7384257	A	2.0462086	A	1.61576468083504	0	lncRNA	50353-1_{1..3000}	"gi|398303861|ref|NR_073055.1| Homo sapiens solute carrier family 16, member 7 (monocarboxylic acid transporter 2) (SLC16A7), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|398303861|ref|NR_073055.1| Homo sapiens solute carrier family 16, member 7 (monocarboxylic acid transporter 2) (SLC16A7), transcript variant 4, non-coding RNA"	Chr12	 60083118	 60086117	+	9194	NR_073055.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00"	NA	inter
LNCA_21_P0002616	9.89807	P	11.007155	P	0.463587958964726	0	lncRNA	THC2776683	NA	NA	NA	NA	XLOC_001707	NA	NA	THC2776683	NA	"BROAD Institute lincRNA (XLOC_001707), lincRNA [TCONS_00004918]"	chr2:151492117-151492176	hs|2q23.3	Agilent_HUMAN_G3V2	THC2776683	THC2776683	chr2	151492117	151492176	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11346_PI429285431	4.774735	P	5.133036	P	0.780082708843007	0	lncRNA	12908-1_{1..748}	lnc-RPS7-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPS7-1:6	chr2	  3608907	  3609654	+	lnc-RPS7-1	lnc-RPS7-1:6	XLOC_001323	linc-RPS7-1	RNASEH1	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-54.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10chr2:3598907-3605940"	NA	inter
CUST_31092_PI429285431	2.787111	A	2.338777	A	1.36446368688493	0	lncRNA	32883-1_{1..653}	n337371|DQ655921|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393034|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393034|-0.8499010|-0.1846515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337371|DQ655921|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393034|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393034|-0.8499010|-0.1846515	chrX	123094368	123095020	+	NA	NA	NA	NA	STAG2	NA	chrX:123094475-123174898	inner
LNCA_21_P0010018	0.88556826	A	0.8992148	A	0.990585535466042	0	lncRNA	ENST00000422494	NA	NA	NA	NA	XLOC_013685	NA	ENST00000422494	NA	NA	"BROAD Institute lincRNA (XLOC_013685), lincRNA [TCONS_00028338]"	chr20:22569944-22569885	hs|20p11.21	Agilent_HUMAN_G3V2	ENST00000422494	ENST00000422494	chr20	 22569885	 22569944	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012608	4.985704	P	5.1273823	P	0.906464044024116	0	lncRNA	TCONS_l2_00020732	NA	NA	NA	NA	XLOC_l2_010816	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010816), lincRNA [TCONS_l2_00020732]"	chr4:121256844-121288829	hs|4q27	Agilent_HUMAN_G3V2	TCONS_l2_00020732	TCONS_l2_00020732	chr4	121256844	121288829	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43416_PI429285431	0.8919122	A	0.8892137	A	1.00187220806386	0	lncRNA	48228-1_{1..637}	"gi|284520906|ref|NR_033264.1| Homo sapiens high mobility group box 4 (HMGB4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|284520906|ref|NR_033264.1| Homo sapiens high mobility group box 4 (HMGB4), transcript variant 2, non-coding RNA"	Chr1	 34329680	 34330316	+	127540	NR_033264.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008815	4.5855894	P	4.770831	P	0.879501778387834	0	lncRNA	TCONS_00023877	NA	NA	NA	NA	XLOC_011182	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011182), lincRNA [TCONS_00023877]"	chr15:24997750-24997809	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023877	TCONS_00023877	chr15	 24997750	 24997809	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33593_PI429285431	3.1637878	P	3.3717136	P	0.865781092812877	0	lncRNA	35158-1_{1..219}	n340348|AF009285|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2809|NULL|-1.1478400|-0.4099728	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340348|AF009285|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2809|NULL|-1.1478400|-0.4099728	chr5	  9192196	  9192414	-	NA	NA	NA	NA	SEMA5A	NA	chr5:9182196-9202415	inner
CUST_30795_PI429285431	12.288374	P	12.441603	P	0.899235564524304	0	lncRNA	32582-1_{1..201}	n336684|Z69891|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327860|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327860|-1.1451400|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336684|Z69891|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327860|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327860|-1.1451400|-1.0000000	chr12	 57081809	 57082009	-	NA	NA	NA	NA	PTGES3	NA	chr12:57071809-57082078	inner
CUST_12322_PI429285431	1.3424076	A	0.8771419	A	1.3805715887579	0	lncRNA	13935-1_{1..493}	lnc-FAM19A5-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM19A5-4:1	chr22	 48736294	 48736786	+	lnc-FAM19A5-4	lnc-FAM19A5-4:1	XLOC_014278	linc-FAM19A5-2	NA	NA	NA	inter
CUST_4655_PI429285431	2.878265	A	4.5364137	P	0.316845471250472	0	lncRNA	4601-1_{1..546}	"transcript_id ""ENST00000452933.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452933.1"" | genecode_v17"	chr13	 78563507	 78564052	-	ENSG00000236133.1	ENST00000452933.1	RP11-318G21.2	RP11-318G21.2-001	NA	NA	NA	inter
CUST_44801_PI429285431	5.7846913	P	5.2673907	P	1.43127470941571	0	lncRNA	49336-1_{1..2474}	"gi|209862770|ref|NR_002730.2| Homo sapiens bromodomain containing 7 pseudogene 3 (BRD7P3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209862770|ref|NR_002730.2| Homo sapiens bromodomain containing 7 pseudogene 3 (BRD7P3), non-coding RNA"	Chr6	118822536	118825009	+	23629	NR_002730.2	NA	NA	NA	NA	NA	inter
CUST_7385_PI429285431	3.095443	A	3.7909822	P	0.617478495956136	0	lncRNA	9031-1_{1..590}	lnc-MARCKS-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MARCKS-5:5	chr6	114314507	114315096	+	lnc-MARCKS-5	lnc-MARCKS-5:5	ENSG00000228624	RP3-399L15.3	NA	NA	NA	inter
CUST_16823_PI429285431	4.725684	P	4.4938684	P	1.17431186537611	0	lncRNA	18530-1_{1..353}	lnc-BCL2A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BCL2A1-1:1	chr15	 80640041	 80640393	-	lnc-BCL2A1-1	lnc-BCL2A1-1:1	XLOC_011545	linc-BCL2A1-1	NA	NA	NA	inter
CUST_27042_PI429285431	2.962212	A	2.665422	A	1.22840815922433	0	lncRNA	28573-1_{1..964}	n324148|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051744|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051744|-1.0510500|-0.1865400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324148|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051744|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051744|-1.0510500|-0.1865400	chr9	 14307083	 14308046	+	NA	NA	NA	NA	NFIB	"hg19_refFlat_NFIB:range=chr9:14088308-143986305'pad=0,hg19_refFlat_NFIB:range=chr9:14088308-143986305'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_NFIB:range=chr9:14088308-143135105'pad=0,hg19_refFlat_NFIB:range=chr9:14088308-143135105'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20chr9:14297083-14357853"	NA	inner
CUST_48630_PI429285431	0.88484716	A	0.8935171	A	0.99400847672793	0	lncRNA	52477-1_{1..1246}	hg19_lincRNAsTranscripts_TCONS_l2_00013764 range=chr2:89084246-89106112 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013764 range=chr2:89084246-89106112 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 89084246	 89085491	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8616_PI429285431	2.3859231	A	2.8413835	A	0.729277404357159	0	lncRNA	10169-2_{3001..4266}	lnc-ANKRD9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD9-1:1	chr14	102958696	102959961	-	lnc-ANKRD9-1	lnc-ANKRD9-1:1	ENSG00000247772	ENST00000324866	TECPR2	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0,hg19_refFlat_ZNF587B:range=chr19:58341897-583557105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.54;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-12.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50chr14:102945696-102966035"	NA	inner
CUST_18581_PI429285431	1.166146	A	1.4411693	A	0.8264369708172	0	lncRNA	20288-1_{1..3000}	lnc-PSMG1-9:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-PSMG1-9:3	chr21	 40309734	 40312733	-	lnc-PSMG1-9	lnc-PSMG1-9:3	ENSG00000205622	AF064858.6	NA	NA	NA	inter
CUST_41783_PI429285431	3.3854046	P	3.263213	A	1.088386977482	0	lncRNA	43358-1_{1..107}	ENST00000578096 ncrna:miRNA chromosome:GRCh37:HSCHR6_MHC_SSTO:33545496:33545602:1 gene:ENSG00000266856 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578096 ncrna:miRNA chromosome:GRCh37:HSCHR6_MHC_SSTO:33545496:33545602:1 gene:ENSG00000266856 gene_biotype:miRNA transcript_biotype:miRNA	chrHSCHR6_MHC_SSTO	 33545496	 33545602	+	ENSG00000266856	ENST00000578096	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0000951	9.308664	P	9.250142	P	1.04139833121414	0	lncRNA	ENST00000452795	NA	NA	NA	NA	XLOC_000063	NA	ENST00000452795	NA	NA	"BROAD Institute lincRNA (XLOC_000063), lincRNA [TCONS_00000157]"	chr1:16848231-16848290	hs|1p36.13	Agilent_HUMAN_G3V2	ENST00000452795	ENST00000452795	chr1	 16848231	 16848290	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47167_PI429285431	7.814577	P	8.528952	P	0.609469107024932	0	lncRNA	51244-2_{3001..3361}	"gi|379030590|ref|NR_046402.1| Homo sapiens polymerase (DNA directed), delta 1, catalytic subunit (POLD1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379030590|ref|NR_046402.1| Homo sapiens polymerase (DNA directed), delta 1, catalytic subunit (POLD1), transcript variant 3, non-coding RNA"	Chr19	 50890580	 50890940	+	5424	NR_046402.1	NA	NA	NA	NA	NA	inter
CUST_15446_PI429285431	4.4535756	P	4.559395	P	0.92927699607684	0	lncRNA	17134-1_{1..202}	lnc-CR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CR2-1:1	chr1	207597375	207597576	+	lnc-CR2-1	lnc-CR2-1:1	XLOC_000541	linc-CR2-1	NA	NA	NA	inter
CUST_33938_PI429285431	4.475703	P	4.280946	P	1.144531365491	0	lncRNA	35478-2_{3001..3344}	n340736|AK095573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3199|NULL|-0.8604430|-0.2462343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340736|AK095573|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3199|NULL|-0.8604430|-0.2462343	chr17	 47132176	 47132519	+	NA	NA	NA	NA	IGF2BP1	NA	chr17:47119176-47133507	inner
CUST_49140_PI429285431	3.0070078	A	3.426638	P	0.747616233108787	0	lncRNA	52967-1_{1..627}	hg19_lincRNAsTranscripts_TCONS_l2_00021242 range=chr4:110278254-110352898 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021242 range=chr4:110278254-110352898 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	110278254	110278880	-	NA	NA	NA	NA	SEC24B	NA	chr4:110354971-110362898	inter
CUST_19227_PI429285431	3.5276895	P	4.080745	P	0.681575083169389	0	lncRNA	20897-1_{1..229}	lnc-ATL3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATL3-1:2	chr11	 63535956	 63536184	-	lnc-ATL3-1	lnc-ATL3-1:2	ENSG00000255651.1	RP11-466C23.4	RTN3	NA	chr11:63525956-63527363	inner
CUST_20068_PI429285431	2.3780282	A	1.8790026	A	1.41325872132547	0	lncRNA	21719-1_{1..3000}	lnc-R3HCC1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-R3HCC1-1:2	chr8	 23220639	 23223638	+	lnc-R3HCC1-1	lnc-R3HCC1-1:2	ENSG00000253837.1	RP11-177H13.2	LOXL2	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_LOXL2:range=chr8:23155556-232258645'pad=0,hg19_refFlat_LOXL2:range=chr8:23155556-232258645'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-60.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60chr8:23210639-23233638"	NA	inter
CUST_38666_PI429285431	3.787584	P	3.508727	P	1.21323329854726	0	lncRNA	39667-1_{1..1804}	n383954|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yex.3||-1.0400200|-0.1184015	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n383954|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yex.3||-1.0400200|-0.1184015	chr20	 62031566	 62033369	-	NA	NA	NA	NA	KCNQ2	NA	chr20:62037542-62043370	inter
LNCA_21_P0008421	4.7110863	P	5.0526814	P	0.789168294034119	0	lncRNA	TCONS_00022710	NA	NA	NA	NA	XLOC_010996	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010996), lincRNA [TCONS_00022710]"	chr14:36604106-36604047	hs|14q13.3	Agilent_HUMAN_G3V2	TCONS_00022710	TCONS_00022710	chr14	 36604047	 36604106	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20094_PI429285431	0.88712066	A	0.88099426	A	1.00425552603111	0	lncRNA	21742-1_{1..180}	lnc-RP11-180C1.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-180C1.1.1-2:1	chr4	 30795545	 30795724	-	lnc-RP11-180C1.1.1-2	lnc-RP11-180C1.1.1-2:1	ENSG00000249678.1	RP11-619J20.1	PCDH7	NA	chr4:30785545-30805592	inner
CUST_48395_PI429285431	2.8374465	A	2.9163578	A	0.946771839020202	0	lncRNA	52250-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00000536 range=chr1:120102717-120147798 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000536 range=chr1:120102717-120147798 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	120102717	120105716	+	NA	NA	NA	NA	ZNF697	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr1:120143876-120157798"	NA	inter
CUST_22205_PI429285431	1.0540341	A	0.8908615	A	1.11974684402195	0	lncRNA	23805-1_{1..3000}	lnc-AC092117.1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC092117.1-1:6	chr16	  2787481	  2790480	-	lnc-AC092117.1-1	lnc-AC092117.1-1:6	ENSG00000205913.2	CTD-2270P14.3	NA	NA	NA	inter
CUST_5768_PI429285431	1.0717844	A	1.0111303	A	1.04293850902105	0	lncRNA	5692-1_{1..475}	"transcript_id ""ENST00000602532.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602532.1"" | genecode_v17"	chr17	 19800037	 19800511	-	ENSG00000270091.1	ENST00000602532.1	RP11-78O7.2	RP11-78O7.2-001	AKAP10	NA	chr17:19808749-19810600	inter
LNCA_21_P0002488	3.1733856	P	2.9579601	P	1.16104629606501	0	lncRNA	TCONS_00004375	NA	NA	NA	NA	XLOC_002258	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002258), lincRNA [TCONS_00004375]"	chr2:108846974-108846915	hs|2q12.3	Agilent_HUMAN_G3V2	TCONS_00004375	TCONS_00004375	chr2	108846915	108846974	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11131_PI429285431	0.90309256	A	0.906396	A	0.997712849401707	0	lncRNA	12689-1_{1..497}	lnc-HSPH1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HSPH1-1:2	chr13	 31627363	 31627859	-	lnc-HSPH1-1	lnc-HSPH1-1:2	XLOC_010561	linc-HMGB1-2	NA	NA	NA	inter
CUST_14838_PI429285431	1.3523071	A	0.89958185	A	1.36862314468547	0	lncRNA	16499-1_{1..1690}	lnc-CITED2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-CITED2-1:2	chr6	139795703	139797392	-	lnc-CITED2-1	lnc-CITED2-1:2	XLOC_005856	linc-CITED2-2	NA	NA	NA	inter
CUST_27371_PI429285431	6.0833745	P	5.9079623	P	1.1292870132583	0	lncRNA	28934-1_{1..595}	n324533|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040303|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040303|-1.2104300|-0.3851603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324533|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040303|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040303|-1.2104300|-0.3851603	chr6	 35620386	 35620980	+	NA	NA	NA	NA	FKBP5	"hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.43;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40chr6:35610386-35631424"	NA	inner
LNCA_19_P00801897	0.90982753	A	0.93557966	A	0.982308351548531	0	lncRNA	XR_109632	XR_109632	XR_109632	NA	NA	LOC729296	uncharacterized LOC729296	NA	THC2495566	NA	"PREDICTED: Homo sapiens hypothetical LOC729296 (LOC729296), miscRNA [XR_109632]"	chr20:58676249-58676308	hs|20q13.33	Agilent_HUMAN_G3V2	XR_109632	XR_109632	chr20	 58676249	 58676308	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26915_PI429285431	0.91192806	A	0.9212718	A	0.993544340848141	0	lncRNA	28433-1_{1..1223}	n323991|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053744|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053744|-0.2669190|-0.2993825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323991|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053744|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053744|-0.2669190|-0.2993825	chr9	115453056	115454278	+	NA	NA	NA	NA	C9orf80	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70chr9:115448786-115480387"	NA	inner
CUST_40034_PI429285431	1.0481627	A	1.0199561	A	1.01974370413153	0	lncRNA	40891-1_{1..3000}	n407227|NR_026695|lncRNA|Homosapiens||RefGeneNoncode|NR_026695||1.7095800|-0.3106826	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407227|NR_026695|lncRNA|Homosapiens||RefGeneNoncode|NR_026695||1.7095800|-0.3106826	chr5	141971742	141974741	-	NA	NA	NA	NA	FGF1	NA	chr5:141971743-142077635	inner
CUST_41491_PI429285431	1.8020161	A	1.8968633	A	0.936371415984807	0	lncRNA	42700-1_{1..99}	ENST00000385219 ncrna:miRNA chromosome:GRCh37:3:44155704:44155802:1 gene:ENSG00000207954 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385219 ncrna:miRNA chromosome:GRCh37:3:44155704:44155802:1 gene:ENSG00000207954 gene_biotype:miRNA transcript_biotype:miRNA	chr3	 44155704	 44155802	+	ENSG00000207954	ENST00000385219	NA	NA	NA	NA	NA	inter
LNCA_21_P0012869	4.233208	P	4.1595693	P	1.05236757300478	0	lncRNA	ENST00000507037	NA	AK310274	NA	Hs.710582	XLOC_l2_011873	NA	ENST00000507037	THC2480517	NA	"BROAD Institute lincRNA (XLOC_l2_011873), lincRNA [TCONS_l2_00022662]"	chr5:177377635-177377694	hs|5q35.3	Agilent_HUMAN_G3V2	ENST00000507037	ENST00000507037	chr5	177377635	177377694	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002676	5.5212846	P	4.675806	P	1.79686073791866	0	lncRNA	TCONS_00005244	NA	NA	NA	NA	XLOC_002301	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002301), lincRNA [TCONS_00005244]"	chr2:123235803-123235744	hs|2q14.3	Agilent_HUMAN_G3V2	TCONS_00005244	TCONS_00005244	chr2	123235744	123235803	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008225	4.3903894	P	4.1634197	P	1.17037406059961	0	lncRNA	TCONS_00022128	NA	NA	NA	NA	XLOC_010736	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010736), lincRNA [TCONS_00022128]"	chr13:113805066-113805007	hs|13q34	Agilent_HUMAN_G3V2	TCONS_00022128	TCONS_00022128	chr13	113805007	113805066	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8567_PI429285431	6.6776724	P	7.013427	P	0.792369580195543	0	lncRNA	10125-1_{1..2245}	lnc-PIP5K1C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PIP5K1C-1:1	chr19	  3711631	  3713875	-	lnc-PIP5K1C-1	lnc-PIP5K1C-1:1	ENSG00000248889	ENST00000508018	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50"	NA	inner
LNCA_33_P3417404	2.9815037	P	3.5506885	P	0.673997525570081	0	lncRNA	XR_108280	XR_108280	XR_108280	   400728	Hs.568078	FAM87B	"family with sequence similarity 87, member B"	NA	THC2479852	GO:0016020|GO:0016021	"PREDICTED: Homo sapiens family with sequence similarity 87, member B (FAM87B), miscRNA [XR_108280]"	chr1:754953-755012	hs|1p36.33	Agilent_HUMAN_G3V2	XR_108280	XR_108280	chr1	   754953	   755012	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32918_PI429285431	4.317616	P	3.9990258	P	1.2471112775008	0	lncRNA	34543-1_{1..2854}	n339591|AK094884|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2035|NULL|12.4334000|-0.0650141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339591|AK094884|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2035|NULL|12.4334000|-0.0650141	chr20	 19867164	 19870017	+	NA	NA	NA	NA	RIN2	NA	chr20:19867165-19983103	inner
CUST_9570_PI429285431	0.8902281	A	0.90438473	A	0.990235358578106	0	lncRNA	11084-1_{1..1243}	lnc-TBL1XR1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBL1XR1-6:1	chr3	176036216	176037458	-	lnc-TBL1XR1-6	lnc-TBL1XR1-6:1	XLOC_003330	linc-SPATA16-2	NA	NA	NA	inter
CUST_11950_PI429285431	1.0207585	A	1.057781	A	0.974664430090226	0	lncRNA	13530-1_{1..245}	lnc-C6orf115-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C6orf115-1:1	chr6	139349572	139349816	+	lnc-C6orf115-1	lnc-C6orf115-1:1	XLOC_005482	linc-C6orf115	C6orf115	NA	chr6:139349819-139359782	inter
CUST_19560_PI429285431	12.314482	P	12.4395075	P	0.916987835069352	0	lncRNA	21216-1_{1..311}	lnc-RHBDL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RHBDL1-1:1	chr16	   732415	   732725	+	lnc-RHBDL1-1	lnc-RHBDL1-1:1	ENSG00000261004.1	LA16c-313D11.10	RHOT2	NA	chr16:722415-724171	inner
CUST_10836_PI429285431	2.0612552	A	2.1114416	A	0.965811535468427	0	lncRNA	12372-1_{1..910}	lnc-C2orf55-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2orf55-1:1	chr2	 99388082	 99388991	-	lnc-C2orf55-1	lnc-C2orf55-1:1	XLOC_002221	linc-MGAT4A	NA	NA	NA	inter
CUST_44120_PI429285431	1.8610487	A	1.2682426	A	1.50817736215928	0	lncRNA	48786-1_{1..608}	"gi|310119158|ref|XR_110032.1| PREDICTED: Homo sapiens LMNE6487 (LOC100128644), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119158|ref|XR_110032.1| PREDICTED: Homo sapiens LMNE6487 (LOC100128644), misc_RNA"	NA	NA	NA	NA	NA	XR_110032.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005353	1.8088481	A	0.8944386	A	1.88479745990783	0	lncRNA	TCONS_00013326	NA	NA	NA	NA	XLOC_005972	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005972), lincRNA [TCONS_00013326]"	chr7:4517872-4517931	hs|7p22.1	Agilent_HUMAN_G3V2	TCONS_00013326	TCONS_00013326	chr7	  4517872	  4517931	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5536_PI429285431	1.8119555	A	3.9384065	P	0.229020556003537	0	lncRNA	5466-2_{3001..3441}	"transcript_id ""ENST00000563424.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000563424.2"" | genecode_v17"	chr16	 50682720	 50683160	+	ENSG00000261685.2	ENST00000563424.2	RP11-401P9.4	RP11-401P9.4-001	NKD1	NA	chr16:50669720-50674771	inter
CUST_38269_PI429285431	2.273693	A	1.1229515	A	2.22027980510658	0	lncRNA	39324-3_{6001..7863}	n381838|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qwb.1||3.2244700|-0.2898169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381838|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qwb.1||3.2244700|-0.2898169	chr12	  9715909	  9717771	+	NA	NA	NA	NA	OVOS	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-54.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80chr12:9699909-9725776"	NA	inter
CUST_39016_PI429285431	1.3101007	A	0.8812982	A	1.34611577803229	0	lncRNA	39995-1_{1..1421}	n385350|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wts.1||3.7495800|-0.2036482	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385350|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wts.1||3.7495800|-0.2036482	chr8	 11205153	 11206573	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16297_PI429285431	0.87671435	A	0.88042796	A	0.997429231797591	0	lncRNA	18003-1_{1..418}	lnc-LPHN3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LPHN3-3:1	chr4	 63036128	 63036545	+	lnc-LPHN3-3	lnc-LPHN3-3:1	XLOC_003556	linc-STAP1-8	NA	NA	NA	inter
LNCA_21_P0013218	2.4048817	A	0.88014346	A	2.87734505233364	0	lncRNA	TCONS_l2_00025953	NA	NA	NA	NA	XLOC_l2_013456	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013456), lincRNA [TCONS_l2_00025953]"	chr7:64544475-64544534	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025953	TCONS_l2_00025953	chr7	 64544475	 64544534	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10722_PI429285431	5.0353727	P	5.4099865	P	0.77131186019646	0	lncRNA	12259-1_{1..1823}	lnc-ODF2L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ODF2L-1:1	chr1	 86969149	 86970971	-	lnc-ODF2L-1	lnc-ODF2L-1:1	XLOC_000897	linc-ODF2L	CLCA1	NA	chr1:86959149-86965977	inter
CUST_1423_PI429285431	8.264902	P	8.435002	P	0.888781073421914	0	lncRNA	1412-1_{1..586}	"transcript_id ""ENST00000464823.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000464823.1"" | genecode_v17"	chr3	107572727	107573312	-	ENSG00000241469.2	ENST00000464823.1	LINC00635	LINC00635-008	NA	NA	NA	inter
CUST_8046_PI429285431	2.1364589	A	1.2435205	A	1.85695441492934	0	lncRNA	9654-1_{1..2647}	lnc-BBS4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BBS4-1:1	chr15	 73074465	 73077111	+	lnc-BBS4-1	lnc-BBS4-1:1	ENSG00000247829	ENST00000500399	ADPGK	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ADPGK:range=chr15:73044682-730760325'pad=0,hg19_refFlat_ADPGK:range=chr15:73044682-730760325'pad=0 3'pad=0 strand=- repeatMasking=none,-109.40;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-32.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50chr15:73064465-73076126"	NA	inter
CUST_13837_PI429285431	2.173079	A	1.3517597	A	1.7670211401556	0	lncRNA	15480-1_{1..510}	lnc-KATNAL1-3:21	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KATNAL1-3:21	chr13	 30937298	 30937807	-	lnc-KATNAL1-3	lnc-KATNAL1-3:21	XLOC_010556	linc-KATNAL1-3	NA	NA	NA	inter
CUST_40847_PI429285431	4.7027807	P	4.712052	P	0.993594229533528	0	lncRNA	41550-1_{1..2728}	n410619|NR_037861_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037861_4||0.0374292|-0.2416403	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410619|NR_037861_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037861_4||0.0374292|-0.2416403	chr6	  3436513	  3439240	+	NA	NA	NA	NA	SLC22A23	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00chr6:3426513-3456793"	NA	inner
CUST_246_PI429201921	1.869221	A	0.9026303	A	1.95421703274924	0	lncRNA	187-1_{1..3000}	TC0X001962.hg.1	TCONS_00017032-XLOC_008105 // Rinn lincRNAs // linc-PRKX-3 chrX:-:4545240-4551613 // chrX // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrX:-:4545240-4551613	NA	Affy_HUMAN_HTA2.0	TCONS_00017032-XLOC_008105	linc-PRKX-3	chrX	  4545240	  4551613	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009553	0.8735275	A	0.8728171	A	1.00049253301164	0	lncRNA	TCONS_00026506	NA	NA	NA	NA	XLOC_012832	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012832), lincRNA [TCONS_00026506]"	chr18:42158047-42157988	hs|18q12.3	Agilent_HUMAN_G3V2	TCONS_00026506	TCONS_00026506	chr18	 42157988	 42158047	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7578_PI429285431	2.0638285	A	1.1559572	A	1.87627500671549	0	lncRNA	9214-1_{1..363}	lnc-SH2B3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SH2B3-1:1	chr12	111834635	111834997	+	lnc-SH2B3-1	lnc-SH2B3-1:1	ENSG00000257595	RP3-473L9.4	SH2B3	NA	chr12:111824635-111844903	inter
CUST_18520_PI429285431	2.3256304	A	1.6911114	A	1.55242008096582	0	lncRNA	20234-1_{1..1939}	lnc-TCL1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCL1B-1:1	chr14	 96137672	 96139610	+	lnc-TCL1B-1	lnc-TCL1B-1:1	ENSG00000187621	TCL6	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	inter
CUST_18475_PI429285431	0.8977119	A	1.3147602	A	0.748955392508163	0	lncRNA	20196-1_{1..3000}	lnc-TMEM132D-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132D-3:5	chr12	130646507	130649506	-	lnc-TMEM132D-3	lnc-TMEM132D-3:5	ENSG00000250208	RP11-143E21.7	FZD10	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr12:130647004-130650285"	NA	inter
LNCA_21_P0003789	0.8744003	A	0.87298375	A	1.00098235983828	0	lncRNA	TCONS_00008635	NA	NA	NA	NA	XLOC_004139	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004139), lincRNA [TCONS_00008635]"	chr4:159687654-159687595	hs|4q32.1	Agilent_HUMAN_G3V2	TCONS_00008635	TCONS_00008635	chr4	159687595	159687654	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30165_PI429285431	4.7235603	P	5.290921	P	0.674850246631623	0	lncRNA	31939-1_{1..256}	n334843|AJ308238|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246982|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246982|1.1433100|-0.1190833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334843|AJ308238|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246982|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246982|1.1433100|-0.1190833	chr11	119020665	119020920	+	NA	NA	NA	NA	ABCG4	NA	chr11:119019750-119030921	inner
LNCA_21_P0014239	1.1627327	A	0.8738638	A	1.22168208042955	0	lncRNA	XR_108986	XR_108986	XR_108986	NA	Hs.556827	LOC100507449	uncharacterized LOC100507449	NA	THC2519308	NA	"PREDICTED: Homo sapiens hypothetical LOC100507449 (LOC100507449), miscRNA [XR_108986]"	chr9:103115800-103115859	hs|9q31.1	Agilent_HUMAN_G3V2	XR_108986	XR_108986	chr9	103115800	103115859	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001860	1.9806681	A	2.2783997	A	0.81353053384703	0	lncRNA	ENST00000418451	NA	NA	NA	NA	XLOC_001470	NA	ENST00000418451	THC2717151	NA	"BROAD Institute lincRNA (XLOC_001470), lincRNA [TCONS_00002893]"	chr2:53093710-53093769	hs|2p16.2	Agilent_HUMAN_G3V2	ENST00000418451	ENST00000418451	chr2	 53093710	 53093769	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51135_PI429285431	1.2078568	A	0.9691078	A	1.17996903453234	0	lncRNA	54763-3_{6001..6601}	hg19_lincRNAsTranscripts_TCONS_l2_00008040 range=chr14:42052848-42075914 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008040 range=chr14:42052848-42075914 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr14	 42058848	 42059448	-	NA	NA	NA	NA	LRFN5	NA	chr14:42076764-42085914	inter
LNCA_21_P0003502	0.87367016	A	1.1467531	A	0.827549239213415	0	lncRNA	ENST00000509360	NA	NA	NA	NA	XLOC_004073	NA	ENST00000509360	NA	NA	"BROAD Institute lincRNA (XLOC_004073), lincRNA [TCONS_00007826]"	chr4:129522480-129520655	hs|4q28.2	Agilent_HUMAN_G3V2	ENST00000509360	ENST00000509360	chr4	129520655	129522480	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10615_PI429285431	0.8845301	A	1.1090753	A	0.855864788832518	0	lncRNA	12145-1_{1..393}	lnc-GPR39-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR39-2:2	chr2	133095945	133096337	+	lnc-GPR39-2	lnc-GPR39-2:2	XLOC_001680	linc-GPR39-1	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30"	NA	inter
CUST_5500_PI429285431	0.882304	A	0.8793684	A	1.00203687447947	0	lncRNA	5432-1_{1..821}	"transcript_id ""ENST00000561541.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561541.1"" | genecode_v17"	chr16	 33054930	 33055750	-	ENSG00000260141.1	ENST00000561541.1	RP11-19N8.4	RP11-19N8.4-001	LOC653550	NA	chr16:33044930-33112910	inter
CUST_42055_PI429285431	9.699368	P	9.715605	P	0.988808465655309	0	lncRNA	43960-1_{1..77}	ENST00000577670 ncrna:miRNA chromosome:GRCh37:15:93447629:93447705:1 gene:ENSG00000264173 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577670 ncrna:miRNA chromosome:GRCh37:15:93447629:93447705:1 gene:ENSG00000264173 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 93447629	 93447705	+	ENSG00000264173	ENST00000577670	NA	NA	CHD2	NA	chr15:93443551-93457705	inner
CUST_28422_PI429285431	0.8861008	A	1.0802343	A	0.874097731904399	0	lncRNA	30082-1_{1..340}	n325745|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044730|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044730|-1.2040200|-0.2829243	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325745|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044730|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044730|-1.2040200|-0.2829243	chr13	 43578513	 43578852	-	NA	NA	NA	NA	DNAJC15	NA	chr13:43597362-43619372	inner
CUST_30441_PI429285431	4.5699506	P	3.887281	P	1.60510714039464	0	lncRNA	32221-1_{1..1025}	n335577|CR542200|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000269069|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000269069|4.3181600|-0.2509626	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335577|CR542200|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000269069|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000269069|4.3181600|-0.2509626	chr4	 78079686	 78080710	+	NA	NA	NA	NA	CCNG2	NA	chr4:78078357-78091213	inner
CUST_26671_PI429285431	0.8811208	A	0.8946455	A	0.990669196970939	0	lncRNA	28168-1_{1..2504}	"lncrnadb|Beta_2.7_RNA_gi|155573622:2497-5000_Human_herpesvirus_5,_complete_genome"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncrnadb20130808	"lncrnadb20130808,NONCODERv3,"	">lncrnadb|Beta_2.7_RNA_gi|155573622:2497-5000_Human_herpesvirus_5,_complete_genome"	NA	NA	     2503	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22200_PI429285431	7.5878873	P	7.469806	P	1.08529052939012	0	lncRNA	23800-1_{1..464}	lnc-ACCSL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ACCSL-1:1	chr11	 44093753	 44094216	+	lnc-ACCSL-1	lnc-ACCSL-1:1	ENSG00000255165.1	CTD-2609K8.3	ACCS	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00chr11:44087729-44103953"	NA	inner
CUST_28969_PI429285431	0.9205514	A	0.9341981	A	0.990585425606596	0	lncRNA	30691-1_{1..372}	n326401|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000100478|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000100478|-1.0908000|-0.2703264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326401|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000100478|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000100478|-1.0908000|-0.2703264	chr1	144088422	144088793	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34284_PI429285431	3.7765489	P	3.8005931	P	0.983471942831133	0	lncRNA	35782-1_{1..343}	n341143|X64983|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3609|NULL|1.1808200|-0.1872899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341143|X64983|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3609|NULL|1.1808200|-0.1872899	chr11	124056350	124056692	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42859_PI429285431	1.3788643	A	1.0478348	A	1.25791069313193	0	lncRNA	45909-1_{1..128}	ENST00000515996 ncrna:snoRNA chromosome:GRCh37:2:24496483:24496610:-1 gene:ENSG00000251805 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515996 ncrna:snoRNA chromosome:GRCh37:2:24496483:24496610:-1 gene:ENSG00000251805 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 24496483	 24496610	-	ENSG00000251805	ENST00000515996	NA	NA	ITSN2	NA	chr2:24486483-24506610	inner
CUST_9250_PI429285431	0.9831264	A	1.069814	A	0.941682353589346	0	lncRNA	10759-1_{1..2870}	lnc-NEDD4L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NEDD4L-2:1	chr18	 55471535	 55474404	+	lnc-NEDD4L-2	lnc-NEDD4L-2:1	ENSG00000249134	XLOC_012692	ATP8B1	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30chr18:55461535-55470327"	NA	inter
CUST_37987_PI429285431	3.7099547	P	3.0977325	A	1.52861193532415	0	lncRNA	39074-1_{1..328}	n346542|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2092|NULL|-1.4752600|-0.4319413	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346542|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2092|NULL|-1.4752600|-0.4319413	chr2	234471384	234471711	-	NA	NA	NA	NA	USP40	NA	chr2:234461384-234474236	inner
CUST_7701_PI429285431	0.8929476	A	1.0852904	A	0.875183351923139	0	lncRNA	9334-1_{1..419}	lnc-DSCC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DSCC1-1:1	chr8	120886527	120886945	-	lnc-DSCC1-1	lnc-DSCC1-1:1	ENSG00000253531	KB-1471A8.2	DEPTOR	NA	chr8:120885900-120896723	inner
LNCA_21_P0004987	8.602389	P	8.322592	P	1.21402404841496	0	lncRNA	TCONS_00012040	NA	NA	NA	NA	XLOC_005574	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005574), lincRNA [TCONS_00012040]"	chr6:1309631-1309572	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_00012040	TCONS_00012040	chr6	  1309572	  1309631	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9802_PI429285431	0.9236708	A	0.92052174	A	1.00218514601974	0	lncRNA	11319-1_{1..3000}	lnc-TCF4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF4-1:2	chr18	 53447380	 53450379	-	lnc-TCF4-1	lnc-TCF4-1:2	XLOC_012849	linc-TCF4-1	NA	NA	NA	inter
LNCA_21_P0011393	0.9047887	A	0.92594415	A	0.985443149986095	0	lncRNA	ENST00000507787	NA	AK311660	NA	NA	XLOC_l2_004594	NA	ENST00000507787	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004594), lincRNA [TCONS_l2_00009409]"	chr15:28836210-28836269	hs|15q13.1	Agilent_HUMAN_G3V2	ENST00000507787	ENST00000507787	chr15	 28836210	 28836269	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003235	1.3355668	A	1.8138206	A	0.717845960200198	0	lncRNA	TCONS_00006887	NA	NA	NA	NA	XLOC_002701	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002701), lincRNA [TCONS_00006887]"	chr3:71834846-71835094	hs|3p13	Agilent_HUMAN_G3V2	TCONS_00006887	TCONS_00006887	chr3	 71834846	 71835094	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36608_PI429285431	0.8878641	A	1.4258931	A	0.688711179084279	0	lncRNA	37801-1_{1..1875}	n345104|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_653|NULL|-1.5324400|-0.2740383	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345104|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_653|NULL|-1.5324400|-0.2740383	chr10	124991290	124993164	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49279_PI429285431	0.90281576	A	0.90631735	A	0.997575825831523	0	lncRNA	53098-1_{1..1271}	hg19_lincRNAsTranscripts_TCONS_l2_00022722 range=chr5:712052-741743 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022722 range=chr5:712052-741743 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	   712052	   713322	-	NA	NA	NA	NA	ZDHHC11B	NA	chr5:732645-751743	inter
LNCA_21_P0011351	0.89598966	A	0.91373783	A	0.987773267411813	0	lncRNA	TCONS_l2_00008928	NA	NA	NA	NA	XLOC_l2_004843	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004843), lincRNA [TCONS_l2_00008928]"	chr15:23155316-23155257	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00008928	TCONS_l2_00008928	chr15	 23155257	 23155316	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25631_PI429285431	6.73013	P	6.82355	P	0.937298188783651	0	lncRNA	27161-1_{1..691}	lnc-CBX6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CBX6-1:1	chr22	 39394091	 39394781	-	lnc-CBX6-1	lnc-CBX6-1:1	ENSG00000249310.2	APOBEC3B-AS1	APOBEC3B	"hg19_refFlat_APOBEC3B:range=chr22:39378459-393884505'pad=0,hg19_refFlat_APOBEC3B:range=chr22:39378459-393884505'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.90;hg19_refFlat_APOBEC3A:range=chr22:39353697-393585145'pad=0,hg19_refFlat_APOBEC3A:range=chr22:39353697-393585145'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_APOBEC3A_B:range=chr22:39353697-393884505'pad=0,hg19_refFlat_APOBEC3A_B:range=chr22:39353697-393884505'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00chr22:39384091-39388783"	NA	inter
CUST_31372_PI429285431	1.8203003	A	1.0351274	A	1.723298836052	0	lncRNA	33151-1_{1..2347}	n337839|AK124188|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|222|NULL|-1.3071900|-0.2515429	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337839|AK124188|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|222|NULL|-1.3071900|-0.2515429	chr15	 63792935	 63795281	-	NA	NA	NA	NA	USP3	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00chr15:63796810-63805282"	NA	inter
CUST_48682_PI429285431	3.5520957	P	3.7849007	P	0.850978743169256	0	lncRNA	52523-1_{1..342}	hg19_lincRNAsTranscripts_TCONS_l2_00013856 range=chr2:102600055-102601158 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013856 range=chr2:102600055-102601158 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	102600055	102600396	+	NA	NA	NA	NA	IL1R2	NA	chr2:102608306-102611158	inter
CUST_20943_PI429285431	4.9749346	P	4.809314	P	1.12164847058132	0	lncRNA	22574-1_{1..1445}	lnc-ITGAL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ITGAL-2:1	chr16	 30547750	 30549194	+	lnc-ITGAL-2	lnc-ITGAL-2:1	ENSG00000235560.3	AC002310.12	ZNF747	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30chr16:30542779-30546194"	NA	inter
LNCA_21_P0012904	0.88448995	A	1.8048776	A	0.528367029774475	0	lncRNA	THC2636349	NA	NA	NA	NA	XLOC_l2_012021	NA	NA	THC2636349	NA	"BROAD Institute lincRNA (XLOC_l2_012021), lincRNA [TCONS_l2_00022884]"	chr5:044495338-044495279	hs|5p12	Agilent_HUMAN_G3V2	THC2636349	THC2636349	chr5	 44495279	 44495338	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45743_PI429285431	4.614609	P	4.7872806	P	0.887198234689528	0	lncRNA	50092-1_{1..1213}	"gi|392050773|ref|NR_002720.2| Homo sapiens transient receptor potential cation channel, subfamily C, member 2, pseudogene (TRPC2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|392050773|ref|NR_002720.2| Homo sapiens transient receptor potential cation channel, subfamily C, member 2, pseudogene (TRPC2), non-coding RNA"	Chr11	  3647690	  3648902	+	7221	NR_002720.2	NA	NA	NA	NA	NA	inter
CUST_13380_PI429285431	2.697671	A	2.6011672	A	1.06917929150801	0	lncRNA	15015-1_{1..679}	lnc-SRRM4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRRM4-2:1	chr12	119305276	119305954	+	lnc-SRRM4-2	lnc-SRRM4-2:1	XLOC_009907	linc-SRRM4-1	NA	NA	NA	inter
CUST_21939_PI429285431	5.7992077	P	6.3721466	P	0.672245966959176	0	lncRNA	23547-1_{1..461}	lnc-SEC22C-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC22C-2:3	chr3	 42695486	 42695946	-	lnc-SEC22C-2	lnc-SEC22C-2:3	ENSG00000230084.1	RP4-613B23.1	ZBTB47	"hg19_refFlat_NKTR:range=chr3:42642499-426874675'pad=0,hg19_refFlat_NKTR:range=chr3:42642499-426874675'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90chr3:42695176-42705818"	NA	inner
LNCA_21_P0002990	0.87896484	A	1.2177325	A	0.790716447926107	0	lncRNA	TCONS_00006114	NA	NA	NA	NA	XLOC_002722	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002722), lincRNA [TCONS_00006114]"	chr3:84039863-84058073	hs|3p12.1	Agilent_HUMAN_G3V2	TCONS_00006114	TCONS_00006114	chr3	 84039863	 84058073	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012219	1.100267	A	2.931669	P	0.280991423133207	0	lncRNA	TCONS_l2_00017422	NA	NA	NA	NA	XLOC_l2_009136	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009136), lincRNA [TCONS_l2_00017422]"	chr21:15304669-15304586	hs|21q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00017422	TCONS_l2_00017422	chr21	 15304586	 15304669	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008654	2.4624054	A	2.6935976	A	0.851930590860576	0	lncRNA	THC2680728	NA	NA	NA	NA	XLOC_011305	NA	NA	THC2680728	NA	"BROAD Institute lincRNA (XLOC_011305), lincRNA [TCONS_00023459]"	chr15:074062703-074062762	hs|15q24.1	Agilent_HUMAN_G3V2	THC2680728	THC2680728	chr15	 74062703	 74062762	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013831	0.8772261	A	1.3590908	A	0.716051520778007	0	lncRNA	TCONS_l2_00030598	NA	NA	NA	NA	XLOC_l2_015821	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015821), lincRNA [TCONS_l2_00030598]"	chrX:130877216-130877157	hs|Xq26.2	Agilent_HUMAN_G3V2	TCONS_l2_00030598	TCONS_l2_00030598	chrX	130877157	130877216	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47985_PI429285431	2.5325394	A	1.7720321	A	1.69408621757929	0	lncRNA	51873-1_{1..2347}	"gi|410172935|ref|XR_172070.1| PREDICTED: Homo sapiens uncharacterized protein DKFZp547L112 (DKFZP547L112), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172935|ref|XR_172070.1| PREDICTED: Homo sapiens uncharacterized protein DKFZp547L112 (DKFZP547L112), misc_RNA"	NA	NA	NA	NA	NA	XR_172070.1	NA	NA	NA	NA	NA	Unknown
CUST_11456_PI429285431	0.8959633	A	0.9007299	A	0.996701496703522	0	lncRNA	13023-1_{1..776}	lnc-FAM84B-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM84B-6:2	chr8	128200290	128201065	-	lnc-FAM84B-6	lnc-FAM84B-6:2	XLOC_007214	linc-FAM84B-8	NA	NA	NA	inter
CUST_12682_PI429285431	5.5559793	P	5.5874605	P	0.978415252972312	0	lncRNA	14300-1_{1..765}	lnc-EYA4-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EYA4-1:8	chr6	133427234	133427998	+	lnc-EYA4-1	lnc-EYA4-1:8	XLOC_005466	linc-EYA4	NA	NA	NA	inter
LNCA_21_P0005868	0.87419224	A	0.87694526	A	0.99809357149672	0	lncRNA	TCONS_00015083	NA	NA	NA	NA	XLOC_007148	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007148), lincRNA [TCONS_00015083]"	chr8:91516648-91516589	hs|8q21.3	Agilent_HUMAN_G3V2	TCONS_00015083	TCONS_00015083	chr8	 91516589	 91516648	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52104_PI429285431	5.6048284	P	6.201348	P	0.661347486624345	0	lncRNA	55629-1_{1..772}	hg19_lincRNAsTranscripts_TCONS_l2_00017569 range=chr22:17528215-17551557 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017569 range=chr22:17528215-17551557 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17528215	 17528986	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25694_PI429285431	5.2766943	P	5.7660766	P	0.712330021610874	0	lncRNA	27223-1_{1..3000}	lnc-PGPEP1L-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PGPEP1L-3:1	chr15	 99697436	 99700435	-	lnc-PGPEP1L-3	lnc-PGPEP1L-3:1	ENSG00000259921.1	AC022819.3	TTC23	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.81;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.31;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70chr15:99687436-99711345"	NA	inner
CUST_41719_PI429285431	1.6263552	A	1.1331534	A	1.40756524770248	0	lncRNA	43237-1_{1..77}	ENST00000585007 ncrna:miRNA chromosome:GRCh37:2:32860322:32860398:1 gene:ENSG00000265057 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585007 ncrna:miRNA chromosome:GRCh37:2:32860322:32860398:1 gene:ENSG00000265057 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 32860322	 32860398	+	ENSG00000265057	ENST00000585007	NA	NA	TTC27	NA	chr2:32853087-32870398	inner
CUST_37560_PI429285431	8.4606905	P	8.339062	P	1.08796225077257	0	lncRNA	38663-1_{1..3000}	n346036|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1586|NULL|-1.4286700|-0.3416271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n346036|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1586|NULL|-1.4286700|-0.3416271	chr6	138141786	138144785	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10"	NA	inter
CUST_15802_PI429285431	0.90213114	A	0.9095712	A	0.994856218174841	0	lncRNA	17492-1_{1..1651}	lnc-C8orf86-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C8orf86-1:3	chr8	 38410139	 38411789	-	lnc-C8orf86-1	lnc-C8orf86-1:3	XLOC_007057	linc-C8orf86-1	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70"	NA	inter
LNCA_21_P0001520	2.184578	A	0.8726531	A	2.4827257405229	0	lncRNA	TCONS_00001533	NA	NA	NA	NA	XLOC_000879	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000879), lincRNA [TCONS_00001533]"	chr1:79775259-79775200	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_00001533	TCONS_00001533	chr1	 79775200	 79775259	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010009	1.6310376	A	1.3965392	A	1.17649761831997	0	lncRNA	TCONS_00028324	NA	NA	NA	NA	XLOC_013666	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013666), lincRNA [TCONS_00028324]"	chr20:18251260-18251201	hs|20p11.23	Agilent_HUMAN_G3V2	TCONS_00028324	TCONS_00028324	chr20	 18251201	 18251260	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2318_PI429285431	0.9016182	A	0.89842534	A	1.00221557266882	0	lncRNA	2310-1_{1..206}	"transcript_id ""ENST00000507813.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507813.1"" | genecode_v17"	chr5	115638051	115638256	-	ENSG00000250015.1	ENST00000507813.1	CTC-339F2.2	CTC-339F2.2-001	COMMD10	NA	chr5:115628051-115628978	inter
CUST_24823_PI429285431	0.90381885	A	0.9033237	A	1.00034327073037	0	lncRNA	26363-1_{1..1538}	lnc-PTN-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-PTN-2:2	chr7	136848868	136850405	-	lnc-PTN-2	lnc-PTN-2:2	ENSG00000234352.2	AC009264.1	NA	"hg19_refFlat_RPL18:range=chr19:49118629-491224005'pad=0,hg19_refFlat_RPL18:range=chr19:49118629-491224005'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70"	NA	inter
CUST_21450_PI429285431	0.8758721	A	1.8753694	A	0.500174252900854	0	lncRNA	23069-1_{1..648}	lnc-RPS23-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS23-1:1	chr5	 81368874	 81369521	-	lnc-RPS23-1	lnc-RPS23-1:1	ENSG00000248192.1	ATG10-AS1	ATG10	NA	chr5:81358874-81379521	inner
CUST_24913_PI429285431	2.4838536	A	2.523807	A	0.972686365315098	0	lncRNA	26454-1_{1..393}	lnc-SPSB4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SPSB4-1:1	chr3	140691876	140692268	+	lnc-SPSB4-1	lnc-SPSB4-1:1	ENSG00000248773.1	RP11-231L11.3	SLC25A36	NA	chr3:140681876-140698785	inner
CUST_47938_PI429285431	0.8946849	A	0.886992	A	1.00534655402382	0	lncRNA	51829-1_{1..1132}	"gi|410172324|ref|XR_171713.1| PREDICTED: Homo sapiens uncharacterized LOC100507222 (LOC100507222), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|410172324|ref|XR_171713.1| PREDICTED: Homo sapiens uncharacterized LOC100507222 (LOC100507222), misc_RNA"	NA	NA	NA	NA	NA	XR_171713.1	NA	NA	NA	NA	NA	Unknown
CUST_29091_PI429285431	8.273631	P	8.367134	P	0.937244266430232	0	lncRNA	30822-1_{1..490}	n326585|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025347|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025347|-1.1397000|-0.2795951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326585|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025347|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025347|-1.1397000|-0.2795951	chr1	 63238755	 63239244	-	NA	NA	NA	NA	ATG4C	NA	chr1:63249777-63259527	inter
CUST_30465_PI429285431	12.6970415	P	12.650507	P	1.03278109675556	0	lncRNA	32245-1_{1..429}	n335609|CR598013|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000277208|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000277208|-1.4261400|-0.3363068	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335609|CR598013|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000277208|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000277208|-1.4261400|-0.3363068	chr17	 39847467	 39847895	+	NA	NA	NA	NA	EIF1	NA	chr17:39845127-39847898	inner
CUST_39217_PI429285431	1.5744698	A	1.108846	A	1.38091431125562	0	lncRNA	40191-1_{1..446}	n386028|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zcf.1||1.5889600|-0.1963007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386028|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009zcf.1||1.5889600|-0.1963007	chr11	126522696	126523141	+	NA	NA	NA	NA	KIRREL3	NA	chr11:126512696-126561995	inner
CUST_12816_PI429285431	1.0115145	A	1.1155136	A	0.930450238147898	0	lncRNA	14445-1_{1..791}	lnc-LYPLAL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYPLAL1-3:1	chr1	219097803	219098593	+	lnc-LYPLAL1-3	lnc-LYPLAL1-3:1	XLOC_000565	linc-LYPLAL1	NA	NA	NA	inter
CUST_25560_PI429285431	5.4220657	P	4.9255214	P	1.41083013809723	0	lncRNA	27089-1_{1..727}	lnc-MAP6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAP6-1:1	chr11	 75283449	 75284175	-	lnc-MAP6-1	lnc-MAP6-1:1	ENSG00000254969.1	RP11-939C17.2	SERPINH1	"hg19_refFlat_SERPINH1:range=chr11:75277395-752831285'pad=0,hg19_refFlat_SERPINH1:range=chr11:75277395-752831285'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80chr11:75273449-75283849"	NA	inner
CUST_7601_PI429285431	0.875739	A	0.8756466	A	1.00006404885052	0	lncRNA	9236-1_{1..786}	lnc-MARCKS-5:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MARCKS-5:18	chr6	114792579	114793364	+	lnc-MARCKS-5	lnc-MARCKS-5:18	ENSG00000228624	RP3-399L15.3	NA	NA	NA	inter
CUST_24621_PI429285431	1.6491839	A	1.0241314	A	1.54226694783108	0	lncRNA	26170-1_{1..687}	lnc-OR4N4-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR4N4-1:12	chr15	 22408267	 22408953	+	lnc-OR4N4-1	lnc-OR4N4-1:12	ENSG00000259176.1	RP11-69H14.6	NA	NA	NA	inter
LNCA_21_P0008463	0.8710879	A	0.8736256	A	0.998242546533008	0	lncRNA	TCONS_00022797	NA	NA	NA	NA	XLOC_011075	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011075), lincRNA [TCONS_00022797]"	chr14:74940192-74940133	hs|14q24.3	Agilent_HUMAN_G3V2	TCONS_00022797	TCONS_00022797	chr14	 74940133	 74940192	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004371	0.8688698	A	0.8688698	A	1	0	lncRNA	THC2745796	NA	NA	NA	NA	XLOC_004765	NA	NA	THC2745796	NA	"BROAD Institute lincRNA (XLOC_004765), lincRNA [TCONS_00010290]"	chr5:029356027-029355968	hs|5p13.3	Agilent_HUMAN_G3V2	THC2745796	THC2745796	chr5	 29355968	 29356027	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013371	6.0483546	P	6.00725	P	1.02890130382128	0	lncRNA	XR_108746	XR_108746	XR_108746	NA	NA	LOC100506098	uncharacterized LOC100506098	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506098, transcript variant 3 (LOC100506098), miscRNA [XR_108746]"	chr7:20257983-20259170	hs|7p21.1	Agilent_HUMAN_G3V2	XR_108746	XR_108746	chr7	 20257983	 20259170	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3224946	1.5392921	A	0.92470217	A	1.53112273065138	0	lncRNA	XR_108603	XR_108603	XR_108603	   401191	Hs.673805	FLJ46010	FLJ46010 protein	NA	THC2487431	NA	"PREDICTED: Homo sapiens FLJ46010 protein (FLJ46010), miscRNA [XR_108603]"	chr5:65867742-65867801	hs|5q12.3	Agilent_HUMAN_G3V2	XR_108603	XR_108603	chr5	 65867742	 65867801	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35834_PI429285431	9.180988	P	8.037493	P	2.20915554292517	0	lncRNA	37236-1_{1..289}	n344506|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_54|NULL|-1.2817100|-0.1900828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344506|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_54|NULL|-1.2817100|-0.1900828	chr2	107314084	107314372	+	NA	NA	NA	NA	NA	"hg19_refFlat_EEF1A1:range=chr6:74227533-742297495'pad=0,hg19_refFlat_EEF1A1:range=chr6:74227533-742297495'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60"	NA	inter
CUST_37310_PI429285431	2.2835853	A	1.3702085	A	1.88344877996665	0	lncRNA	38417-1_{1..284}	n345754|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1303|NULL|-1.2918600|-0.2822763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345754|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1303|NULL|-1.2918600|-0.2822763	chr12	 55806408	 55806691	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32506_PI429285431	1.5881064	A	2.4711232	A	0.542232390157646	0	lncRNA	34173-1_{1..1695}	n339110|CR595216|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1540|NULL|4.9564800|-0.1287455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339110|CR595216|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1540|NULL|4.9564800|-0.1287455	chr16	 19179581	 19181275	+	NA	NA	NA	NA	SYT17	NA	chr16:19179638-19271374	inner
CUST_15763_PI429285431	2.573876	A	2.1954443	A	1.29992798384344	0	lncRNA	17451-1_{1..1639}	lnc-GPR183-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR183-2:4	chr13	100148389	100150027	-	lnc-GPR183-2	lnc-GPR183-2:4	XLOC_010706	linc-GPR183-2	TM9SF2	NA	chr13:100153728-100158597	inter
CUST_38164_PI429285431	3.6432834	P	1.2850853	A	5.12729568987236	0	lncRNA	39235-1_{1..3000}	n381409|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001iqe.2||-1.2488100|-0.4433531	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381409|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001iqe.2||-1.2488100|-0.4433531	chr10	 18967048	 18970047	+	NA	NA	NA	NA	ARL5B	NA	chr10:18957048-18966940	inter
CUST_37897_PI429285431	0.90399224	A	0.9188366	A	0.98976342774694	0	lncRNA	38986-2_{3001..3173}	n346434|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1984|NULL|-1.7536300|-0.2503766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346434|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1984|NULL|-1.7536300|-0.2503766	chr2	210167255	210167427	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37669_PI429285431	5.067917	P	2.9405708	A	4.36913050675615	0	lncRNA	38762-1_{1..234}	n346154|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1704|NULL|-1.3150500|-0.3679187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346154|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1704|NULL|-1.3150500|-0.3679187	chr13	 20133177	 20133410	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35726_PI429285431	3.135991	P	3.0884657	A	1.03349062367639	0	lncRNA	37143-1_{1..2035}	n342893|AK096360|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5401|NULL|-0.9306910|-0.2616994	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342893|AK096360|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5401|NULL|-0.9306910|-0.2616994	chr12	 31173696	 31175730	-	NA	NA	NA	NA	DDX11	NA	chr12:31226779-31236781	inter
CUST_12375_PI429285431	0.9038044	A	0.906714	A	0.997985251299829	0	lncRNA	13987-1_{1..265}	lnc-UBE2E2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBE2E2-1:2	chr3	 23643541	 23643805	+	lnc-UBE2E2-1	lnc-UBE2E2-1:2	XLOC_002597	linc-UBE2E1	NA	NA	NA	inter
CUST_24784_PI429285431	4.6255765	P	4.844692	P	0.859091974579702	0	lncRNA	26327-1_{1..2166}	lnc-FAM211A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM211A-3:1	chr17	 16317838	 16320003	-	lnc-FAM211A-3	lnc-FAM211A-3:1	ENSG00000264739.1	RP11-138I1.2	TRPV2	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90chr17:16318856-16330003"	NA	inner
CUST_15740_PI429285431	3.65313	P	4.0281568	P	0.771091088517271	0	lncRNA	17426-1_{1..206}	lnc-STK32B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STK32B-1:1	chr4	  5035334	  5035539	+	lnc-STK32B-1	lnc-STK32B-1:1	XLOC_003435	linc-STK32B-1	NA	NA	NA	inter
CUST_30503_PI429285431	7.9735804	P	7.980161	P	0.99544906270457	0	lncRNA	32283-1_{1..618}	n335659|CR611267|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000290462|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000290462|-1.1940900|-0.3777676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335659|CR611267|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000290462|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000290462|-1.1940900|-0.3777676	chr17	   662782	   663399	-	NA	NA	NA	NA	GEMIN4	NA	chr17:652782-655501	inner
CUST_46688_PI429285431	7.245658	P	7.254824	P	0.99366675303137	0	lncRNA	50851-1_{1..3000}	"gi|217272878|ref|NR_024568.1| Homo sapiens F-box protein 31 (FBXO31), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|217272878|ref|NR_024568.1| Homo sapiens F-box protein 31 (FBXO31), transcript variant 2, non-coding RNA"	Chr16	 87362942	 87365941	-	79791	NR_024568.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0009934	2.1824687	A	2.8273783	A	0.639532862835457	0	lncRNA	TCONS_00028106	NA	NA	NA	NA	XLOC_013461	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013461), lincRNA [TCONS_00028106]"	chr20:10844981-10845040	hs|20p12.2	Agilent_HUMAN_G3V2	TCONS_00028106	TCONS_00028106	chr20	 10844981	 10845040	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5359_PI429285431	6.6956816	P	6.7782373	P	0.94438321162279	0	lncRNA	5297-1_{1..410}	"transcript_id ""ENST00000559643.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559643.1"" | genecode_v17"	chr15	 98665792	 98666201	-	ENSG00000259320.1	ENST00000559643.1	RP11-183E24.2	RP11-183E24.2-001	NA	NA	NA	inter
LNCA_21_P0008532	0.8901396	A	1.3082817	A	0.748387776403136	0	lncRNA	ENST00000553386	NA	NA	NA	NA	XLOC_011007	NA	ENST00000553386	THC2662887	NA	"BROAD Institute lincRNA (XLOC_011007), lincRNA [TCONS_00023100]"	chr14:44936352-44936293	hs|14q21.2	Agilent_HUMAN_G3V2	ENST00000553386	ENST00000553386	chr14	 44936293	 44936352	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18127_PI429285431	1.5715077	A	1.1554786	A	1.33425008200831	0	lncRNA	19862-1_{1..661}	lnc-PPIE-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPIE-3:2	chr1	 40303549	 40304209	+	lnc-PPIE-3	lnc-PPIE-3:2	XLOC_000155	linc-MFSD2A	TRIT1	NA	chr1:40306703-40313684	inter
LNCA_21_P0003620	5.7868977	P	6.009596	P	0.85696114589245	0	lncRNA	TCONS_00008102	NA	NA	NA	NA	XLOC_003569	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003569), lincRNA [TCONS_00008102]"	chr4:73435617-73435676	hs|4q13.3	Agilent_HUMAN_G3V2	TCONS_00008102	TCONS_00008102	chr4	 73435617	 73435676	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005396	0.8864729	A	0.90063226	A	0.990233484765627	0	lncRNA	TCONS_00013515	NA	NA	NA	NA	XLOC_006156	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006156), lincRNA [TCONS_00013515]"	chr7:79328382-79328441	hs|7q21.11	Agilent_HUMAN_G3V2	TCONS_00013515	TCONS_00013515	chr7	 79328382	 79328441	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014672	6.5345483	P	6.660943	P	0.916117974075048	0	lncRNA	XR_110922	XR_110922	XR_110922	NA	NA	LOC100505554	uncharacterized LOC100505554	NA	THC2533246	NA	"PREDICTED: Homo sapiens hypothetical LOC100505554 (LOC100505554), miscRNA [XR_110922]"	chr11:66245015-66244956	hs|11q13.2	Agilent_HUMAN_G3V2	XR_110922	XR_110922	chr11	 66244956	 66245015	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21209_PI429285431	1.8953749	A	0.8950894	A	2.00039582620453	0	lncRNA	22834-1_{1..761}	lnc-KRT18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KRT18-1:1	chr12	 53090163	 53090923	+	lnc-KRT18-1	lnc-KRT18-1:1	ENSG00000257700.1	RP11-641A6.3	KRT77	"hg19_refFlat_KRT77:range=chr12:53084949-530972185'pad=0,hg19_refFlat_KRT77:range=chr12:53084949-530972185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00chr12:53083410-53097247"	NA	inner
LNCA_21_P0004321	0.88328636	A	0.8952685	A	0.991729007879299	0	lncRNA	TCONS_00010823	NA	NA	NA	NA	XLOC_004621	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004621), lincRNA [TCONS_00010823]"	chr5:159007378-159007437	hs|5q33.3	Agilent_HUMAN_G3V2	TCONS_00010823	TCONS_00010823	chr5	159007378	159007437	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007937	0.8823107	A	0.89365643	A	0.992166581633927	0	lncRNA	ENST00000420693	NA	NA	NA	NA	XLOC_010378	NA	ENST00000420693	NA	NA	"BROAD Institute lincRNA (XLOC_010378), lincRNA [TCONS_00021547]"	chr13:45925426-45925485	hs|13q14.13	Agilent_HUMAN_G3V2	ENST00000420693	ENST00000420693	chr13	 45925426	 45925485	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30783_PI429285431	3.7245564	P	3.801549	P	0.94803182784553	0	lncRNA	32570-1_{1..438}	n336637|Z47232|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327327|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327327|3.5019000|-0.0986783	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336637|Z47232|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327327|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327327|3.5019000|-0.0986783	chr14	106330425	106330862	-	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106859077	inter
CUST_13208_PI429285431	0.88959706	A	0.9008914	A	0.992201924064103	0	lncRNA	14836-1_{1..359}	lnc-GNAQ-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNAQ-2:1	chr9	 81760412	 81760770	-	lnc-GNAQ-2	lnc-GNAQ-2:1	XLOC_007746	linc-GNAQ-6	NA	NA	NA	inter
CUST_7046_PI429285431	4.6798806	P	2.4694533	A	4.62812329848731	0	lncRNA	6991-1_{1..724}	"transcript_id ""ENST00000602639.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602639.1"" | genecode_v17"	chrX	 41095109	 41095832	+	ENSG00000270155.1	ENST00000602639.1	RP5-1172N10.3	RP5-1172N10.3-001	USP9X	NA	chrX:41085109-41095832	inner
LNCA_21_P0005075	1.5139272	A	3.703847	P	0.219163613384159	0	lncRNA	TCONS_00012341	NA	NA	NA	NA	XLOC_005893	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005893), lincRNA [TCONS_00012341]"	chr6:157541467-157541408	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_00012341	TCONS_00012341	chr6	157541408	157541467	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4985_PI429285431	0.9300201	A	2.6189914	A	0.310147994242041	0	lncRNA	4929-1_{1..208}	"transcript_id ""ENST00000555595.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555595.1"" | genecode_v17"	chr14	 99791136	 99791343	-	ENSG00000258383.1	ENST00000555595.1	CTD-2200A16.1	CTD-2200A16.1-001	NA	NA	NA	inter
CUST_371_PI429201921	4.0810895	P	2.4883258	A	3.01626607664365	0	lncRNA	236-3_...	TC6_mann_hap4000178.hg.1	TCONS_l2_00031141-XLOC_l2_016040 // Broad TUCP // linc-RPRM-7 chr6_mann_hap4:+:4319691-4328727 // chr6_mann_hap4 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6_mann_hap4:+:4319691-4328727	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031141-XLOC_l2_016040	linc-RPRM-7	chr6_mann_hap4	  4319691	  4328727	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014699	3.550754	P	4.1959453	P	0.639408000120282	0	lncRNA	XR_111901	XR_111901	XR_111901	NA	NA	LOC100508118	uncharacterized LOC100508118	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100508118 (LOC100508118), miscRNA [XR_111901]"	chr19:52900471-52900412	hs|19q13.41	Agilent_HUMAN_G3V2	XR_111901	XR_111901	chr19	 52900412	 52900471	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10885_PI429285431	1.7064303	A	2.1422534	A	0.739271857921317	0	lncRNA	12426-1_{1..571}	lnc-SAP30-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SAP30-1:1	chr4	174278214	174278784	+	lnc-SAP30-1	lnc-SAP30-1:1	XLOC_003780	linc-SAP30	NA	NA	NA	inter
CUST_25603_PI429285431	1.4695076	A	1.5576303	A	0.940746094447097	0	lncRNA	27132-1_{1..999}	lnc-AC009336.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC009336.1-1:2	chr2	177001349	177002347	-	lnc-AC009336.1-1	lnc-AC009336.1-1:2	ENSG00000237380.2	HOXD-AS2	HOXD8	NA	chr2:176994422-176997423	inter
CUST_18832_PI429285431	0.89188325	A	0.9023055	A	0.992801878269324	0	lncRNA	20526-1_{1..357}	lnc-COMMD10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-COMMD10-1:1	chr5	115394422	115394778	+	lnc-COMMD10-1	lnc-COMMD10-1:1	ENSG00000251570	CTD-2287O16.2	LOC644100	NA	chr5:115387163-115394827	inner
CUST_48616_PI429285431	11.458879	P	11.567924	P	0.927201625060763	0	lncRNA	52462-1_{1..632}	hg19_lincRNAsTranscripts_TCONS_l2_00013708 range=chr2:70320771-70330166 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013708 range=chr2:70320771-70330166 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 70320771	 70321402	+	NA	NA	NA	NA	PCBP1	NA	chr2:70314585-70316335	inter
CUST_50359_PI429285431	4.591556	P	4.6714597	P	0.9461207982507	0	lncRNA	54073-1_{1..2038}	hg19_lincRNAsTranscripts_TCONS_l2_00029647 range=chr9:139534413-139538944 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029647 range=chr9:139534413-139538944 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	139534413	139536450	-	NA	NA	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00"	NA	inter
CUST_19923_PI429285431	1.138557	A	1.7845597	A	0.639048485622835	0	lncRNA	21578-1_{1..531}	lnc-PTPRB-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPRB-1:3	chr12	 70637092	 70637622	-	lnc-PTPRB-1	lnc-PTPRB-1:3	ENSG00000257815.1	RP11-611E13.2	CNOT2	NA	chr12:70636774-70647138	inner
CUST_42937_PI429285431	6.508129	P	6.534294	P	0.982027275083427	0	lncRNA	46054-1_{1..107}	ENST00000516274 ncrna:snoRNA chromosome:GRCh37:5:23972297:23972403:-1 gene:ENSG00000252083 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516274 ncrna:snoRNA chromosome:GRCh37:5:23972297:23972403:-1 gene:ENSG00000252083 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	 23972297	 23972403	-	ENSG00000252083	ENST00000516274	NA	NA	NA	NA	NA	inter
CUST_22954_PI429285431	2.1654341	A	1.6388379	A	1.44052649936646	0	lncRNA	24530-1_{1..463}	lnc-SP110-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SP110-1:2	chr2	231444616	231445078	-	lnc-SP110-1	lnc-SP110-1:2	ENSG00000235419.1	AC010149.4	NA	NA	NA	inter
CUST_38040_PI429285431	1.9783623	A	2.3967755	A	0.748247158421463	0	lncRNA	39122-1_{1..3000}	n377615|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029998||0.0224067|-0.1882768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377615|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029998||0.0224067|-0.1882768	chr6	  1575418	  1578417	+	NA	NA	NA	NA	NA	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
LNCA_21_P0007465	4.4105616	P	5.097931	P	0.62098511818375	0	lncRNA	TCONS_00020094	NA	NA	NA	NA	XLOC_009485	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009485), lincRNA [TCONS_00020094]"	chr11:69290735-69290676	hs|11q13.3	Agilent_HUMAN_G3V2	TCONS_00020094	TCONS_00020094	chr11	 69290676	 69290735	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41646_PI429285431	9.102794	P	9.058986	P	1.03083112226992	0	lncRNA	43050-1_{1..92}	ENST00000408136 ncrna:miRNA chromosome:GRCh37:10:65132717:65132808:-1 gene:ENSG00000221063 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408136 ncrna:miRNA chromosome:GRCh37:10:65132717:65132808:-1 gene:ENSG00000221063 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 65132717	 65132808	-	ENSG00000221063	ENST00000408136	NA	NA	JMJD1C	NA	chr10:65122717-65142808	inner
CUST_20344_PI429285431	4.4088	P	4.4633946	P	0.962864971945201	0	lncRNA	21986-1_{1..413}	lnc-YES1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YES1-1:4	chr18	   904150	   904562	-	lnc-YES1-1	lnc-YES1-1:4	ENSG00000265179.1	RP11-672L10.2	ADCYAP1	NA	chr18:904944-912173	inter
CUST_13155_PI429285431	1.5346761	A	1.0226856	A	1.42601632716086	0	lncRNA	14782-1_{1..581}	lnc-PPP4R1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP4R1-6:1	chr18	  9010181	  9010761	-	lnc-PPP4R1-6	lnc-PPP4R1-6:1	XLOC_012751	linc-LAMA1-1	NA	NA	NA	inter
CUST_24397_PI429285431	3.913933	P	4.1238546	P	0.864584213905514	0	lncRNA	25950-1_{1..542}	lnc-HMBS-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMBS-1:8	chr11	118948211	118948752	+	lnc-HMBS-1	lnc-HMBS-1:8	ENSG00000160695.8	VPS11	HMBS	NA	chr11:118955587-118958357	inner
CUST_36011_PI429285431	0.88463223	M	0.88221836	A	1.00167456770995	0	lncRNA	37345-1_{1..3000}	n344623|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_171|NULL|-1.4287700|-0.3104359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344623|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_171|NULL|-1.4287700|-0.3104359	chr14	 48702664	 48705663	-	NA	NA	NA	NA	NA	"hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-65.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-58.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10"	NA	inter
CUST_33995_PI429285431	0.8737613	A	0.87426907	A	0.999648102586551	0	lncRNA	35532-1_{1..2258}	n340808|AK124847|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3271|NULL|-0.9638400|-0.3061534	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340808|AK124847|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3271|NULL|-0.9638400|-0.3061534	chr17	 65671273	 65673530	-	NA	NA	NA	NA	PITPNC1	"hg19_refFlat_PITPNC1:range=chr17:65374271-656886935'pad=0,hg19_refFlat_PITPNC1:range=chr17:65374271-656886935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_PITPNC1:range=chr17:65374271-656890045'pad=0,hg19_refFlat_PITPNC1:range=chr17:65374271-656890045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60chr17:65661273-65685672"	NA	inner
CUST_45131_PI429285431	0.87287474	A	0.8738588	A	0.999318134161739	0	lncRNA	49611-1_{1..1827}	"gi|397139268|ref|XR_110089.2| PREDICTED: Homo sapiens uncharacterized LOC401442 (LOC401442), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139268|ref|XR_110089.2| PREDICTED: Homo sapiens uncharacterized LOC401442 (LOC401442), misc_RNA"	Chr8	   688554	   690380	+	401442	XR_110089.3	NA	NA	NA	NA	NA	inter
CUST_32465_PI429285431	3.0244532	P	3.6383407	P	0.653433579094802	0	lncRNA	34136-1_{1..1097}	n339067|BC038548|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1497|NULL|-1.0766800|-0.3021398	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339067|BC038548|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1497|NULL|-1.0766800|-0.3021398	chr2	195209005	195210101	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37298_PI429285431	7.390141	P	7.3837357	P	1.00444968621953	0	lncRNA	38406-1_{1..688}	n345741|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1290|NULL|-1.3318100|-0.0443072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345741|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1290|NULL|-1.3318100|-0.0443072	chr20	 62667538	 62668225	+	NA	NA	NA	NA	PRPF6	NA	chr20:62657538-62664453	inter
CUST_6968_PI429285431	5.9081693	P	5.7214193	P	1.13819677751301	0	lncRNA	6916-1_{1..577}	"transcript_id ""ENST00000415655.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415655.1"" | genecode_v17"	chr22	 27959800	 27960376	-	ENSG00000224027.1	ENST00000415655.1	RP1-231P7P.1	RP1-231P7P.1-001	NA	NA	NA	inter
CUST_3496_PI429285431	1.0851858	A	2.0603158	A	0.508694006009986	0	lncRNA	3467-1_{1..281}	"transcript_id ""ENST00000420204.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420204.1"" | genecode_v17"	chr9	 99995483	 99995763	+	ENSG00000235494.1	ENST00000420204.1	RP11-498P14.4	RP11-498P14.4-001	NA	NA	NA	inter
CUST_30621_PI429285431	3.2992692	P	2.8784304	A	1.33870566790784	0	lncRNA	32403-1_{1..227}	n335960|X72447|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323289|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323289|1.0468500|-0.0789323	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335960|X72447|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323289|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323289|1.0468500|-0.0789323	chr2	 89157165	 89157391	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014692	5.923631	P	5.999122	P	0.949019081321596	0	lncRNA	XR_111722	XR_111722	XR_111722	NA	NA	LOC100288781	uncharacterized LOC100288781	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100288781 (LOC100288781), miscRNA [XR_111722]"	chr17:55028325-55038162	hs|17q22	Agilent_HUMAN_G3V2	XR_111722	XR_111722	chr17	 55028325	 55038162	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012294	9.721246	P	9.685011	P	1.02543425684844	0	lncRNA	TCONS_l2_00017981	NA	NA	NA	NA	XLOC_l2_009501	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009501), lincRNA [TCONS_l2_00017981]"	chr22:24644978-24644919	hs|22q11.23	Agilent_HUMAN_G3V2	TCONS_l2_00017981	TCONS_l2_00017981	chr22	 24644919	 24644978	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011048	3.2781823	P	2.921916	A	1.28010868101939	0	lncRNA	TCONS_l2_00005745	NA	NA	NA	NA	XLOC_l2_003039	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003039), lincRNA [TCONS_l2_00005745]"	chr12:70297742-70297801	hs|12q15	Agilent_HUMAN_G3V2	TCONS_l2_00005745	TCONS_l2_00005745	chr12	 70297742	 70297801	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008904	0.9042681	A	0.9252185	A	0.985583220806745	0	lncRNA	TCONS_00024325	NA	NA	NA	NA	XLOC_011639	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011639), lincRNA [TCONS_00024325]"	chr16:9611313-9611372	hs|16p13.2	Agilent_HUMAN_G3V2	TCONS_00024325	TCONS_00024325	chr16	  9611313	  9611372	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38061_PI429285431	0.9101971	A	0.9107613	A	0.999609002820056	0	lncRNA	39139-1_{1..932}	n377634|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030032||-1.1581800|-0.2329099	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377634|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030032||-1.1581800|-0.2329099	chr7	   137966	   138897	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27474_PI429285431	3.0010412	A	3.9920583	P	0.503122948289421	0	lncRNA	29044-2_{3001..4364}	n324650|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317578|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317578|0.2357880|-0.3477111	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324650|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317578|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317578|0.2357880|-0.3477111	chr22	 46122982	 46124345	+	NA	NA	NA	NA	ATXN10	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00chr22:46109982-46157955"	NA	inner
CUST_45581_PI429285431	7.0196905	P	7.161209	P	0.906564454001788	0	lncRNA	49975-1_{1..3000}	"gi|387762522|ref|NR_048574.1| Homo sapiens glutamate dehydrogenase 1 pseudogene 7 (GLUD1P7), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387762522|ref|NR_048574.1| Homo sapiens glutamate dehydrogenase 1 pseudogene 7 (GLUD1P7), non-coding RNA"	Chr10	 46764668	 46767667	+	414212	NR_048574.1	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00"	NA	inter
LNCA_21_P0009488	0.89533657	A	0.91285163	A	0.987932884256316	0	lncRNA	TCONS_00026344	NA	NA	NA	NA	XLOC_012694	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012694), lincRNA [TCONS_00026344]"	chr18:56327828-56327887	hs|18q21.32	Agilent_HUMAN_G3V2	TCONS_00026344	TCONS_00026344	chr18	 56327828	 56327887	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33605_PI429285431	1.4836272	A	2.839806	A	0.390615526261877	0	lncRNA	35170-1_{1..458}	n340362|AF009263|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2823|NULL|-1.2227800|-0.2844288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340362|AF009263|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2823|NULL|-1.2227800|-0.2844288	chr5	  9724863	  9725320	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009753	6.2885394	P	6.031231	P	1.1952466813575	0	lncRNA	THC2527567	NA	NA	NA	NA	XLOC_013282	NA	NA	THC2527567	NA	"BROAD Institute lincRNA (XLOC_013282), lincRNA [TCONS_00027272]"	NA	NA	Agilent_HUMAN_G3V2	THC2527567	THC2527567	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47289_PI429285431	5.209381	P	5.2776113	P	0.953807280425395	0	lncRNA	51358-1_{1..1957}	"gi|310124001|ref|XR_109614.1| PREDICTED: Homo sapiens uncharacterized LOC100128028 (LOC100128028), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310124001|ref|XR_109614.1| PREDICTED: Homo sapiens uncharacterized LOC100128028 (LOC100128028), misc_RNA"	NA	NA	NA	NA	NA	XR_109614.1	NA	NA	NA	"hg19_refFlat_MMP9:range=chr20:44637566-446450075'pad=0,hg19_refFlat_MMP9:range=chr20:44637566-446450075'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.00;hg19_refFlat_SLC12A5:range=chr20:44650405-446862445'pad=0,hg19_refFlat_SLC12A5:range=chr20:44650405-446862445'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.30"	NA	Unknown
CUST_20924_PI429285431	2.666172	A	2.7793634	A	0.924540612680553	0	lncRNA	22555-1_{1..439}	lnc-NLRP12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NLRP12-1:1	chr19	 54372163	 54372601	-	lnc-NLRP12-1	lnc-NLRP12-1:1	ENSG00000228323.1	AC008753.6	MYADM	NA	chr19:54369611-54379689	inner
CUST_43522_PI429285431	0.94577205	A	2.127301	A	0.440884007160969	0	lncRNA	48306-1_{1..548}	"gi|387157897|ref|NR_046590.1| Homo sapiens DPYD antisense RNA 1 (DPYD-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|387157897|ref|NR_046590.1| Homo sapiens DPYD antisense RNA 1 (DPYD-AS1), non-coding RNA"	Chr1	 97561479	 97562026	+	100873932	NR_046590.1	NA	NA	NA	"hg19_refFlat_DPYD:range=chr1:97544532-983864785'pad=0,hg19_refFlat_DPYD:range=chr1:97544532-983864785'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00"	NA	inter
CUST_36905_PI429285431	2.7257152	A	2.9415004	A	0.861077382897121	0	lncRNA	38065-1_{1..867}	n345378|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_927|NULL|-1.5465800|-0.2281165	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345378|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_927|NULL|-1.5465800|-0.2281165	chr19	 58826153	 58827019	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27482_PI429285431	5.9929314	P	5.8828645	P	1.07927828314701	0	lncRNA	29052-1_{1..951}	n324658|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000318937|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000318937|0.0814808|-0.2866300	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324658|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000318937|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000318937|0.0814808|-0.2866300	chr22	 42126280	 42127230	+	NA	NA	NA	NA	MEI1	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10chr22:42116280-42145631"	NA	inner
CUST_28311_PI429285431	5.7478485	P	5.869862	P	0.918904284803977	0	lncRNA	29956-1_{1..726}	n325616|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257940|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257940|-1.2960600|-0.5539725	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325616|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257940|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257940|-1.2960600|-0.5539725	chr14	 53136299	 53137024	-	NA	NA	NA	NA	ERO1L	NA	chr14:53126299-53160494	inner
CUST_33089_PI429285431	1.1515192	A	0.9042162	A	1.1869860665612	0	lncRNA	34693-1_{1..1602}	n339778|AK022165|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2225|NULL|1.1138700|-0.3626019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339778|AK022165|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2225|NULL|1.1138700|-0.3626019	chr18	  4161045	  4162646	-	NA	NA	NA	NA	DLGAP1	NA	chr18:4151045-4172646	inner
CUST_15888_PI429285431	3.3121066	P	2.696665	A	1.53202686924964	0	lncRNA	17579-1_{1..308}	lnc-TRMT11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRMT11-1:1	chr6	126397377	126397684	+	lnc-TRMT11-1	lnc-TRMT11-1:1	XLOC_005458	linc-CENPW-2	NA	NA	NA	inter
CUST_32573_PI429285431	6.0102887	P	6.2703533	P	0.835050527276674	0	lncRNA	34236-2_{3001..3119}	n339190|BC031945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1621|NULL|2.5838600|-0.1413969	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339190|BC031945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1621|NULL|2.5838600|-0.1413969	chr2	239064529	239064647	-	NA	NA	NA	NA	FAM132B	NA	chr2:239072683-239074635	inner
LNCA_21_P0004362	0.87827855	A	4.159118	P	0.102888992501636	0	lncRNA	ENST00000504765	NA	AK097766	NA	NA	XLOC_004727	NA	ENST00000504765	THC2487475	NA	"BROAD Institute lincRNA (XLOC_004727), lincRNA [TCONS_00009599]"	chr5:7363160-7363101	hs|5p15.31	Agilent_HUMAN_G3V2	ENST00000504765	ENST00000504765	chr5	  7363101	  7363160	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33048_PI429285431	2.4284682	A	1.9964657	A	1.34910487215827	0	lncRNA	34660-1_{1..1396}	n339738|BC020771|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2184|NULL|6.1855600|-0.3105800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339738|BC020771|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2184|NULL|6.1855600|-0.3105800	chr20	 58515524	 58516919	+	NA	NA	NA	NA	SYCP2	NA	chr20:58505524-58507209	inner
CUST_38648_PI429285431	1.2282145	A	0.8803757	A	1.27265272706454	0	lncRNA	39652-1_{1..3000}	n383889|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wxz.2||1.8577400|-0.1515224	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n383889|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wxz.2||1.8577400|-0.1515224	chr20	 31220661	 31223660	-	NA	NA	NA	NA	C20orf203	NA	chr20:31219427-31239783	inner
LNCA_21_P0006199	1.2474663	A	0.8821709	A	1.28814535758394	0	lncRNA	TCONS_00016114	NA	NA	NA	NA	XLOC_007502	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007502), lincRNA [TCONS_00016114]"	chr9:109401669-109435160	hs|9q31.2	Agilent_HUMAN_G3V2	TCONS_00016114	TCONS_00016114	chr9	109401669	109435160	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10043_PI429285431	1.1895554	A	0.90840924	A	1.21515989399424	0	lncRNA	11570-2_{3001..6000}	lnc-DR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DR1-1:1	chr1	 93800269	 93803268	+	lnc-DR1-1	lnc-DR1-1:1	XLOC_000294	linc-DR1	DR1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60chr1:93811478-93815355"	NA	inter
CUST_29206_PI429285431	8.25249	P	8.222902	P	1.02072059012643	0	lncRNA	30953-1_{1..607}	n326725|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001337|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001337|-0.7147450|-0.1275537	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326725|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001337|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001337|-0.7147450|-0.1275537	chr1	  2718274	  2718880	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42939_PI429285431	3.798864	P	3.5229735	P	1.21074118567168	0	lncRNA	46058-1_{1..86}	ENST00000362541 ncrna:snoRNA chromosome:GRCh37:9:139988797:139988882:1 gene:ENSG00000199411 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362541 ncrna:snoRNA chromosome:GRCh37:9:139988797:139988882:1 gene:ENSG00000199411 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	139988797	139988882	+	ENSG00000199411	ENST00000362541	NA	NA	MAN1B1	NA	chr9:139981417-139998882	inter
LNCA_21_P0004051	2.1389399	A	0.87693256	A	2.39829202934228	0	lncRNA	ENST00000509367	NA	NA	NA	NA	XLOC_004524	NA	ENST00000509367	NA	NA	"BROAD Institute lincRNA (XLOC_004524), lincRNA [TCONS_00009494]"	chr5:117601671-117601730	hs|5q23.1	Agilent_HUMAN_G3V2	ENST00000509367	ENST00000509367	chr5	117601671	117601730	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18590_PI429285431	3.3747177	P	3.650042	P	0.826264563223827	0	lncRNA	20297-1_{1..1310}	lnc-TAX1BP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TAX1BP1-1:1	chr7	 27666842	 27668151	+	lnc-TAX1BP1-1	lnc-TAX1BP1-1:1	ENSG00000233400	AC007130.1	HIBADH	"hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90chr7:27656842-27677109"	NA	inner
CUST_7892_PI429285431	4.8694334	P	4.842012	P	1.01918885027925	0	lncRNA	9509-1_{1..424}	lnc-C8orf56-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C8orf56-1:7	chr8	104298066	104298489	-	lnc-C8orf56-1	lnc-C8orf56-1:7	ENSG00000247081	RP11-318M2.2	NA	NA	NA	inter
CUST_30492_PI429285431	11.108439	P	10.785461	P	1.25091000454348	0	lncRNA	32272-1_{1..654}	n335646|CR608822|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000288017|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000288017|-1.3611300|-0.3394050	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335646|CR608822|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000288017|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000288017|-1.3611300|-0.3394050	chr20	 17922244	 17922897	-	NA	NA	NA	NA	SNX5	NA	chr20:17922244-17932898	inner
LNCA_19_P00320628	0.87410486	A	0.8721115	A	1.00138264683982	0	lncRNA	THC2654949	NA	NA	NA	NA	XLOC_012053	NA	NA	THC2654949	NA	"BROAD Institute lincRNA (XLOC_012053), lincRNA [TCONS_00025091]"	chr16:087324391-087324332	hs|16q24.2	Agilent_HUMAN_G3V2	THC2654949	THC2654949	chr16	 87324332	 87324391	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007189	1.3312441	A	0.8726491	A	1.37420286885719	0	lncRNA	TCONS_00019262	NA	NA	NA	NA	XLOC_009092	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009092), lincRNA [TCONS_00019262]"	chr11:27534757-27534816	hs|11p14.1	Agilent_HUMAN_G3V2	TCONS_00019262	TCONS_00019262	chr11	 27534757	 27534816	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34388_PI429285431	5.8857584	P	7.450369	P	0.338068944643648	0	lncRNA	35872-2_{3001..3228}	n341258|BC065566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3726|NULL|6.0084400|-0.0869869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341258|BC065566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3726|NULL|6.0084400|-0.0869869	chr7	 73445487	 73445714	+	NA	NA	NA	NA	ELN	NA	chr7:73442427-73484237	inner
LNCA_21_P0003747	1.9276906	A	2.3298292	A	0.756735693243727	0	lncRNA	TCONS_00008503	NA	NA	NA	NA	XLOC_003982	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003982), lincRNA [TCONS_00008503]"	chr4:75857817-75857758	hs|4q13.3	Agilent_HUMAN_G3V2	TCONS_00008503	TCONS_00008503	chr4	 75857758	 75857817	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001776	2.3329954	A	0.8742606	A	2.74867207656495	0	lncRNA	BC036617	NA	BC036617	NA	NA	XLOC_001558	NA	NA	THC2497748	NA	"BROAD Institute lincRNA (XLOC_001558), lincRNA [TCONS_00004837]"	chr2:86116884-86118315	hs|2p11.2	Agilent_HUMAN_G3V2	BC036617	BC036617	chr2	 86116884	 86118315	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005420	0.8752675	A	0.874529	A	1.00051202023047	0	lncRNA	TCONS_00013570	NA	NA	NA	NA	XLOC_006216	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006216), lincRNA [TCONS_00013570]"	chr7:115431237-115431296	hs|7q31.2	Agilent_HUMAN_G3V2	TCONS_00013570	TCONS_00013570	chr7	115431237	115431296	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17108_PI429285431	3.3868787	A	2.3294458	A	2.08122493882003	0	lncRNA	18818-1_{1..758}	lnc-AC079341.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC079341.1-2:1	chr4	122155323	122156080	+	lnc-AC079341.1-2	lnc-AC079341.1-2:1	XLOC_003674	linc-EXOSC9-2	NA	NA	NA	inter
CUST_26014_PI429285431	8.481439	P	8.63703	P	0.897764528320916	0	lncRNA	27533-1_{1..641}	lnc-ALDH1L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALDH1L2-1:1	chr12	105500566	105501206	-	lnc-ALDH1L2-1	lnc-ALDH1L2-1:1	ENSG00000257999.1	RP11-61E11.2	KIAA1033	NA	chr12:105501492-105510957	inter
CUST_23840_PI429285431	1.4085302	A	0.87376624	A	1.4487051118536	0	lncRNA	25403-1_{1..421}	lnc-TMCO3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMCO3-2:1	chr13	114116552	114116972	+	lnc-TMCO3-2	lnc-TMCO3-2:1	ENSG00000227608.1	DCUN1D2-AS1	ADPRHL1	NA	chr13:114106552-114107839	inner
CUST_44316_PI429285431	1.5847932	A	1.7575928	A	0.887119523435086	0	lncRNA	48948-1_{1..2969}	"gi|310119339|ref|XR_110380.1| PREDICTED: Homo sapiens uncharacterized LOC100507033 (LOC100507033), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310119339|ref|XR_110380.1| PREDICTED: Homo sapiens uncharacterized LOC100507033 (LOC100507033), misc_RNA"	Chr3	194217046	194220014	-	100507033	XR_110380.2	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20"	NA	inter
LNCA_21_P0014644	1.7143427	A	4.599718	P	0.13533666988195	0	lncRNA	ENST00000522486	XR_110881	XR_110881	NA	NA	LOC100507481	NA	ENST00000522486	THC2644788	NA	"PREDICTED: Homo sapiens hypothetical LOC100507481 (LOC100507481), miscRNA [XR_110881]"	chr8:40156678-40156619	hs|8p11.21	Agilent_HUMAN_G3V2	ENST00000522486	ENST00000522486	chr8	 40156619	 40156678	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44949_PI429285431	0.90881467	A	0.91759294	A	0.993933840791348	0	lncRNA	49460-2_{3001..3613}	"gi|410170512|ref|XR_159055.2| PREDICTED: Homo sapiens uncharacterized LOC401357 (LOC401357), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170512|ref|XR_159055.2| PREDICTED: Homo sapiens uncharacterized LOC401357 (LOC401357), misc_RNA"	Chr7	 56879811	 56880423	-	401357	XR_159055.3	NA	NA	NA	NA	NA	inter
CUST_38044_PI429285431	0.888778	A	0.90355986	A	0.989806306908817	0	lncRNA	39124-1_{1..3000}	n377617|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030000||0.1676980|-0.2897003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377617|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030000||0.1676980|-0.2897003	chr6	  4301448	  4304447	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90"	NA	inter
CUST_51097_PI429285431	10.806939	P	10.858316	P	0.965014817638121	0	lncRNA	54735-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00006891 range=chr13:64410945-64415515 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006891 range=chr13:64410945-64415515 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 64410945	 64413944	+	NA	NA	NA	NA	LOC100507505	"hg19_refFlat_OR1J2:range=chr9:125273081-1252740225'pad=0,hg19_refFlat_OR1J2:range=chr9:125273081-1252740225'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_OR1E2:range=chr17:3336164-33371355'pad=0,hg19_refFlat_OR1E2:range=chr17:3336164-33371355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_OR1J4:range=chr9:125281420-1252823615'pad=0,hg19_refFlat_OR1J4:range=chr9:125281420-1252823615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_OR1E1:range=chr17:3300760-33017045'pad=0,hg19_refFlat_OR1E1:range=chr17:3300760-33017045'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80chr13:64400945-64407126"	NA	inter
CUST_25592_PI429285431	6.1040897	P	6.5031195	P	0.758368107836107	0	lncRNA	27122-1_{1..170}	lnc-ZNF585B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF585B-1:1	chr19	 37726881	 37727050	-	lnc-ZNF585B-1	lnc-ZNF585B-1:1	ENSG00000229576.1	AC012309.4	ZNF383	"hg19_refFlat_ZNF850:range=chr19:37238669-372535085'pad=0,hg19_refFlat_ZNF850:range=chr19:37238669-372535085'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_ZNF560:range=chr19:9577250-95859895'pad=0,hg19_refFlat_ZNF560:range=chr19:9577250-95859895'pad=0 3'pad=0 strand=- repeatMasking=none,-64.30;hg19_refFlat_ZNF829:range=chr19:37382394-374060695'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374060695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF605:range=chr12:133501959-1335222215'pad=0,hg19_refFlat_ZNF605:range=chr12:133501959-1335222215'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_ZNF383:range=chr19:37721356-377345665'pad=0,hg19_refFlat_ZNF383:range=chr19:37721356-377345665'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF610:range=chr19:52852426-528700205'pad=0,hg19_refFlat_ZNF610:range=chr19:52852426-528700205'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF571:range=chr19:38055500-380775775'pad=0,hg19_refFlat_ZNF571:range=chr19:38055500-380775775'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF677:range=chr19:53740225-537548035'pad=0,hg19_refFlat_ZNF677:range=chr19:53740225-537548035'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30chr19:37717366-37734574"	NA	inner
LNCA_21_P0007292	3.9132628	P	4.490869	P	0.670074680749222	0	lncRNA	TCONS_00019525	NA	NA	NA	NA	XLOC_009320	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009320), lincRNA [TCONS_00019525]"	chr11:125978833-125978892	hs|11q24.2	Agilent_HUMAN_G3V2	TCONS_00019525	TCONS_00019525	chr11	125978833	125978892	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43232_PI429285431	0.9146964	A	0.9290417	A	0.990105867948387	0	lncRNA	48048-1_{1..371}	ENST00000600987 havana:sense_intronic chromosome:GRCh37:19:16954836:16957284:1 gene:ENSG00000268743 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000600987 havana:sense_intronic chromosome:GRCh37:19:16954836:16957284:1 gene:ENSG00000268743 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 16954836	 16955206	+	ENSG00000268743	ENST00000600987	NA	NA	SIN3B	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10chr19:16944836-16967284"	NA	inner
LNCA_21_P0001616	2.7027733	A	3.770321	P	0.477129336870533	0	lncRNA	TCONS_00001799	NA	NA	NA	NA	XLOC_001188	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001188), lincRNA [TCONS_00001799]"	chr1:210463846-210463787	hs|1q32.2	Agilent_HUMAN_G3V2	TCONS_00001799	TCONS_00001799	chr1	210463787	210463846	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39620_PI429285431	0.9111533	A	1.4299576	A	0.697950051799055	0	lncRNA	40559-1_{1..1647}	n387711|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011luo.1||6.7668900|-0.2179240	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387711|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011luo.1||6.7668900|-0.2179240	chr9	 99488102	 99489748	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007780	1.5073488	A	1.93567	A	0.743126025054727	0	lncRNA	TCONS_00020970	NA	NA	NA	NA	XLOC_010240	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010240), lincRNA [TCONS_00020970]"	chr12:126630113-126630054	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020970	TCONS_00020970	chr12	126630054	126630113	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7690_PI429285431	2.3113759	A	1.8827764	A	1.34592638091721	0	lncRNA	9323-1_{1..2438}	lnc-DAGLA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-DAGLA-1:1	chr11	 61372967	 61375404	+	lnc-DAGLA-1	lnc-DAGLA-1:1	ENSG00000250230	ENST00000506329	NA	NA	NA	inter
CUST_8393_PI429285431	8.449385	P	8.327549	P	1.08811874150426	0	lncRNA	9971-1_{1..1774}	lnc-CLDN5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLDN5-1:1	chr22	 19553760	 19555533	-	lnc-CLDN5-1	lnc-CLDN5-1:1	ENSG00000250369	ENST00000514976	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00"	NA	inter
CUST_31825_PI429285431	1.0796825	A	2.4575808	A	0.384778928331463	0	lncRNA	33561-1_{1..596}	n338372|BC040048|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|767|NULL|-0.8217450|-0.2213417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338372|BC040048|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|767|NULL|-0.8217450|-0.2213417	chr14	 71648216	 71648811	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30341_PI429285431	3.6347585	P	2.745738	A	1.85191835973348	0	lncRNA	32117-1_{1..747}	n335266|AY653038|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255944|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255944|4.0801300|-0.3171008	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335266|AY653038|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255944|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255944|4.0801300|-0.3171008	chr1	186278945	186279691	+	NA	NA	NA	NA	TPR	NA	chr1:186280784-186292889	inter
CUST_9378_PI429285431	5.3937197	P	5.242408	P	1.11057875266535	0	lncRNA	10881-1_{1..1776}	lnc-UEVLD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UEVLD-1:1	chr11	 18612083	 18613858	-	lnc-UEVLD-1	lnc-UEVLD-1:1	XLOC_009389	linc-UEVLD	UEVLD	NA	chr11:18602083-18610281	inter
CUST_29779_PI429285431	3.6478505	P	3.2885332	P	1.28281870924149	0	lncRNA	31542-1_{1..213}	n333476|BC027957|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091419|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091419|-0.5730910|-0.0478364	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333476|BC027957|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091419|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091419|-0.5730910|-0.0478364	chr3	 10183485	 10183697	+	NA	NA	NA	NA	VHL	NA	chr3:10183319-10193698	inner
LNCA_21_P0010426	1.4841692	A	0.89793885	A	1.50131878862441	0	lncRNA	TCONS_00029623	NA	NA	NA	NA	XLOC_014279	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014279), lincRNA [TCONS_00029623]"	chr22:48864433-48864492	hs|22q13.32	Agilent_HUMAN_G3V2	TCONS_00029623	TCONS_00029623	chr22	 48864433	 48864492	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3929_PI429285431	1.0946708	A	1.4718071	A	0.769964427670708	0	lncRNA	3899-1_{1..520}	"transcript_id ""ENST00000528183.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000528183.1"" | genecode_v17"	chr11	 44490014	 44490533	+	ENSG00000255451.1	ENST00000528183.1	RP11-58K22.1	RP11-58K22.1-001	NA	NA	NA	inter
CUST_25653_PI429285431	1.396611	A	1.269666	A	1.09197891533627	0	lncRNA	27183-1_{1..522}	lnc-ADM-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADM-2:1	chr11	 10186506	 10187027	+	lnc-ADM-2	lnc-ADM-2:1	ENSG00000254865.1	RP11-748C4.1	SBF2	NA	chr11:10176506-10196656	inner
CUST_42963_PI429285431	0.8873501	A	1.0331031	A	0.903907469109877	0	lncRNA	46100-1_{1..133}	ENST00000384159 ncrna:snoRNA chromosome:GRCh37:6:82473741:82473873:1 gene:ENSG00000206886 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384159 ncrna:snoRNA chromosome:GRCh37:6:82473741:82473873:1 gene:ENSG00000206886 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	 82473741	 82473873	+	ENSG00000206886	ENST00000384159	NA	NA	NA	NA	NA	inter
CUST_36707_PI429285431	6.4317718	P	6.139473	P	1.22458999388245	0	lncRNA	37888-1_{1..335}	n345195|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_744|NULL|-1.3261000|-0.2564676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345195|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_744|NULL|-1.3261000|-0.2564676	chr12	123611828	123612162	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23520_PI429285431	1.4530861	A	0.876225	A	1.4916004112598	0	lncRNA	25087-1_{1..706}	lnc-DTL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DTL-2:1	chr1	212019389	212020094	+	lnc-DTL-2	lnc-DTL-2:1	ENSG00000229258.1	RP11-552D8.1	NA	NA	NA	inter
CUST_3621_PI429285431	1.2738495	A	0.8771317	A	1.31650937956104	0	lncRNA	3591-1_{1..335}	"transcript_id ""ENST00000455871.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455871.1"" | genecode_v17"	chr10	 10407143	 10407477	-	ENSG00000234306.1	ENST00000455871.1	RP11-271F18.1	RP11-271F18.1-001	NA	NA	NA	inter
LNCA_21_P0013490	2.0915885	A	2.171988	A	0.945795707996703	0	lncRNA	TCONS_l2_00027787	NA	NA	NA	NA	XLOC_l2_014217	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014217), lincRNA [TCONS_l2_00027787]"	chr8:58145743-58145802	hs|8q12.1	Agilent_HUMAN_G3V2	TCONS_l2_00027787	TCONS_l2_00027787	chr8	 58145743	 58145802	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003338	0.87407696	A	0.87637126	A	0.998410976260885	0	lncRNA	ENST00000505628	NA	NA	NA	NA	XLOC_003465	NA	ENST00000505628	NA	NA	"BROAD Institute lincRNA (XLOC_003465), lincRNA [TCONS_00007483]"	chr4:14244334-14244393	hs|4p15.33	Agilent_HUMAN_G3V2	ENST00000505628	ENST00000505628	chr4	 14244334	 14244393	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27672_PI429285431	1.1737275	A	1.3960252	A	0.857199135413733	0	lncRNA	29250-1_{1..609}	n324879|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170919|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170919|-1.0371300|-0.4493552	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324879|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000170919|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000170919|-1.0371300|-0.4493552	chr21	 21860954	 21861562	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37532_PI429285431	1.0366842	A	1.8429768	A	0.571849495261717	0	lncRNA	38636-1_{1..3000}	n346007|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1557|NULL|-1.2690200|-0.3211121	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346007|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1557|NULL|-1.2690200|-0.3211121	chr2	118594387	118597386	+	NA	NA	NA	NA	DDX18	NA	chr2:118584387-118589953	inter
CUST_33738_PI429285431	1.6707866	A	2.7742617	A	0.465394123771431	0	lncRNA	35295-1_{1..816}	n340516|BC031588|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2978|NULL|-0.7634010|-0.3890408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340516|BC031588|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2978|NULL|-0.7634010|-0.3890408	chr17	 15943785	 15944600	+	NA	NA	NA	NA	NCOR1	NA	chr17:15933785-15954587	inner
CUST_43797_PI429285431	6.0252004	P	6.0807867	P	0.962203331713739	0	lncRNA	48527-1_{1..3000}	"gi|109638756|ref|NR_003095.1| Homo sapiens E2F transcription factor 6 (E2F6), transcript variant e, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|109638756|ref|NR_003095.1| Homo sapiens E2F transcription factor 6 (E2F6), transcript variant e, non-coding RNA"	NA	NA	NA	NA	NA	NR_003095.1	NA	NA	NA	NA	NA	Unknown
CUST_24433_PI429285431	5.0640984	P	4.9788485	P	1.0608714869398	0	lncRNA	25986-1_{1..826}	lnc-KBTBD3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KBTBD3-1:2	chr11	105972379	105973204	-	lnc-KBTBD3-1	lnc-KBTBD3-1:2	ENSG00000254433.1	RP11-677I18.3	AASDHPPT	"hg19_refFlat_AASDHPPT:range=chr11:105948438-1059676345'pad=0,hg19_refFlat_AASDHPPT:range=chr11:105948438-1059676345'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00chr11:105962379-105969419"	NA	inter
LNCA_21_P0010591	4.165394	P	4.2028794	P	0.974351751541688	0	lncRNA	TCONS_l2_00000966	NA	NA	NA	NA	XLOC_l2_000727	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000727), lincRNA [TCONS_l2_00000966]"	chr1:741187-709610	hs|1p36.33	Agilent_HUMAN_G3V2	TCONS_l2_00000966	TCONS_l2_00000966	chr1	   709610	   741187	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18768_PI429285431	5.5677934	P	5.913812	P	0.786752302054576	0	lncRNA	20464-1_{1..744}	lnc-GTF2F2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2F2-2:3	chr13	 45943936	 45944679	+	lnc-GTF2F2-2	lnc-GTF2F2-2:3	ENSG00000170919	XXyac-R12DG2.2	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80"	NA	inter
CUST_27210_PI429285431	3.2375267	P	3.6136155	P	0.770523680033888	0	lncRNA	28752-1_{1..799}	n324342|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042631|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042631|-0.3444050|-0.2778352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324342|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042631|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042631|-0.3444050|-0.2778352	chr6	149580754	149581552	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16448_PI429285431	1.8280507	A	1.1996597	A	1.54583999693095	0	lncRNA	18147-1_{1..254}	lnc-LRRTM1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRTM1-4:1	chr2	 81155867	 81156120	-	lnc-LRRTM1-4	lnc-LRRTM1-4:1	XLOC_002181	linc-LRRTM1-2	NA	NA	NA	inter
LNCA_21_P0009678	2.1849282	A	2.1317983	A	1.03751334987407	0	lncRNA	TCONS_00026873	NA	NA	NA	NA	XLOC_012931	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012931), lincRNA [TCONS_00026873]"	chr19:6662705-6662764	hs|19p13.3	Agilent_HUMAN_G3V2	TCONS_00026873	TCONS_00026873	chr19	  6662705	  6662764	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003905	4.7500086	P	5.346456	P	0.661380584737261	0	lncRNA	TCONS_00009151	NA	NA	NA	NA	XLOC_004135	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004135), lincRNA [TCONS_00009151]"	chr4:157555915-157545959	hs|4q32.1	Agilent_HUMAN_G3V2	TCONS_00009151	TCONS_00009151	chr4	157545959	157555915	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14060_PI429285431	12.660683	P	13.048867	P	0.764090802728935	0	lncRNA	15706-1_{1..799}	lnc-C21orf33-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C21orf33-2:1	chr21	 45622449	 45623247	+	lnc-C21orf33-2	lnc-C21orf33-2:1	XLOC_013967	linc-AIRE-3	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50"	NA	inter
CUST_17534_PI429285431	1.867063	A	1.7979691	A	1.049057604862	0	lncRNA	19259-1_{1..458}	lnc-KLF4-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF4-5:2	chr9	109378117	109378574	-	lnc-KLF4-5	lnc-KLF4-5:2	XLOC_007819	linc-ABCA1-6	NA	NA	NA	inter
CUST_4749_PI429285431	0.889354	A	0.8907274	A	0.999048484640325	0	lncRNA	4693-1_{1..358}	"transcript_id ""ENST00000548385.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548385.1"" | genecode_v17"	chr14	 27286174	 27286531	+	ENSG00000257185.1	ENST00000548385.1	RP11-626P14.2	RP11-626P14.2-002	NA	NA	NA	inter
CUST_14620_PI429285431	3.6898053	P	4.2374825	P	0.684120705405855	0	lncRNA	16291-1_{1..300}	lnc-SLC4A10-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC4A10-4:1	chr2	163176508	163176807	+	lnc-SLC4A10-4	lnc-SLC4A10-4:1	XLOC_001732	linc-GCA-1	IFIH1	NA	chr2:163166508-163175039	inter
CUST_16774_PI429285431	0.90072113	A	0.90429074	A	0.997528793363702	0	lncRNA	18482-1_{1..1545}	lnc-COL28A1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-COL28A1-1:5	chr7	  7603868	  7605412	-	lnc-COL28A1-1	lnc-COL28A1-1:5	XLOC_006350	linc-COL28A1	MIOS	NA	chr7:7606616-7613933	inter
CUST_17333_PI429285431	0.8809767	A	0.92676616	A	0.968759555037833	0	lncRNA	19051-1_{1..1067}	lnc-RP11-664D7.4.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-664D7.4.1-3:2	chr8	 69980713	 69981779	-	lnc-RP11-664D7.4.1-3	lnc-RP11-664D7.4.1-3:2	XLOC_007116	linc-CPA6-4	NA	NA	NA	inter
CUST_41717_PI429285431	5.7150993	P	6.0134816	P	0.81316368919761	0	lncRNA	43227-1_{1..93}	ENST00000581555 ncrna:miRNA chromosome:GRCh37:6:159185693:159185785:-1 gene:ENSG00000265558 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581555 ncrna:miRNA chromosome:GRCh37:6:159185693:159185785:-1 gene:ENSG00000265558 gene_biotype:miRNA transcript_biotype:miRNA	chr6	159185693	159185785	-	ENSG00000265558	ENST00000581555	NA	NA	SYTL3	NA	chr6:159175693-159185908	inner
LNCA_21_P0006667	1.8946881	A	2.235847	A	0.789406935774224	0	lncRNA	ENST00000420945	NA	NA	NA	NA	XLOC_008441	NA	ENST00000420945	THC2712993	NA	"BROAD Institute lincRNA (XLOC_008441), lincRNA [TCONS_00017809]"	chr10:31895012-31895071	hs|10p11.22	Agilent_HUMAN_G3V2	ENST00000420945	ENST00000420945	chr10	 31895012	 31895071	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47150_PI429285431	1.794235	A	1.0599408	A	1.66358340657925	0	lncRNA	51230-2_{3001..5066}	"gi|296531370|ref|NR_033680.1| Homo sapiens caspase recruitment domain family, member 8 (CARD8), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|296531370|ref|NR_033680.1| Homo sapiens caspase recruitment domain family, member 8 (CARD8), transcript variant 9, non-coding RNA"	Chr19	 48714343	 48716408	-	22900	NR_033680.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10"	NA	inter
LNCA_21_P0003865	0.8684275	A	0.92377126	A	0.962365107007476	0	lncRNA	TCONS_00008948	NA	NA	NA	NA	XLOC_003802	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003802), lincRNA [TCONS_00008948]"	chr4:184400161-184400220	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00008948	TCONS_00008948	chr4	184400161	184400220	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52072_PI429285431	3.2284575	P	2.6865292	A	1.45591719007803	0	lncRNA	55600-1_{1..871}	hg19_lincRNAsTranscripts_TCONS_l2_00018295 range=chr22:16189032-16193016 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018295 range=chr22:16189032-16193016 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 16189032	 16189902	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37950_PI429285431	15.29704	P	14.079388	P	2.32567902625544	0	lncRNA	39040-1_{1..260}	n346497|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2047|NULL|-1.4137400|-0.1716049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346497|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2047|NULL|-1.4137400|-0.1716049	chr8	 48068709	 48068968	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47729_PI429285431	3.1858559	A	2.1738825	A	2.01666772670161	0	lncRNA	51684-1_{1..3000}	"gi|385137081|ref|NR_047619.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 49, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137081|ref|NR_047619.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 49, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047619.1	NA	NA	NA	NA	NA	inter
CUST_16220_PI429285431	0.89481694	A	0.90603477	A	0.99225454459723	0	lncRNA	17926-1_{1..838}	lnc-PVALB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PVALB-2:1	chr22	 37285238	 37286075	-	lnc-PVALB-2	lnc-PVALB-2:1	XLOC_014366	linc-PVALB-1	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30"	NA	inter
CUST_38785_PI429285431	1.0496856	A	0.95573217	A	1.06729088547906	0	lncRNA	39779-1_{1..1705}	n384444|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003gxa.2||-1.2962100|-0.4462067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384444|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003gxa.2||-1.2962100|-0.4462067	chr4	 45683336	 45685040	-	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-22.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.60"	NA	inter
CUST_8096_PI429285431	1.4194311	A	0.9263555	A	1.40744212607238	0	lncRNA	9701-1_{1..858}	lnc-C20orf197-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf197-3:3	chr20	 58821096	 58821953	+	lnc-C20orf197-3	lnc-C20orf197-3:3	ENSG00000228340	RP5-1043L13.1	NA	NA	NA	inter
LNCA_21_P0014770	1.0969166	A	0.94169754	A	1.1135906939177	0	lncRNA	XR_132858	XR_132858	XR_132858	NA	NA	LOC100653351	uncharacterized LOC100653351	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100653351 (LOC100653351), miscRNA [XR_132858]"	chr7:105148948-105162514	hs|7q22.3	Agilent_HUMAN_G3V2	XR_132858	XR_132858	chr7	105148948	105162514	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48952_PI429285431	0.9119788	A	0.920284	A	0.994259812232419	0	lncRNA	52794-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00019025 range=chr3:181670177-181728449 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019025 range=chr3:181670177-181728449 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	181670177	181673176	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20"	NA	inter
CUST_37141_PI429285431	4.3427587	P	4.406907	P	0.956509829827994	0	lncRNA	38262-1_{1..3000}	n345580|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1129|NULL|-1.6015200|-0.2891391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345580|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1129|NULL|-1.6015200|-0.2891391	chr3	 42056195	 42059194	+	NA	NA	NA	NA	LOC100287063	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-8.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chr3:42046195-42125985"	NA	inter
LNCA_21_P0005289	7.058752	P	7.402619	P	0.787926520524404	0	lncRNA	ENST00000412197	NA	NA	NA	NA	XLOC_006380	NA	ENST00000412197	NA	NA	"BROAD Institute lincRNA (XLOC_006380), lincRNA [TCONS_00013144]"	chr7:25590609-25587458	hs|7p15.2	Agilent_HUMAN_G3V2	ENST00000412197	ENST00000412197	chr7	 25587458	 25590609	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42342_PI429285431	9.609787	P	9.745627	P	0.910139756212879	0	lncRNA	45001-1_{1..86}	ENST00000363389 ncrna:snoRNA chromosome:GRCh37:19:49994432:49994517:1 gene:ENSG00000200259 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363389 ncrna:snoRNA chromosome:GRCh37:19:49994432:49994517:1 gene:ENSG00000200259 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	 49994432	 49994517	+	ENSG00000200259	ENST00000363389	NA	NA	FLT3LG	NA	chr19:49984432-49989488	inter
CUST_4011_PI429285431	0.8903166	A	2.0354733	A	0.452140576338764	0	lncRNA	3972-1_{1..383}	"transcript_id ""ENST00000535936.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535936.1"" | genecode_v17"	chr11	 73639578	 73639960	+	ENSG00000256360.1	ENST00000535936.1	RP11-707G14.7	RP11-707G14.7-001	PAAF1	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30chr11:73629578-73638779"	NA	inter
CUST_45095_PI429285431	3.4448435	P	4.0416136	P	0.661232664601098	0	lncRNA	49579-1_{1..1185}	"gi|310120114|ref|XR_108783.1| PREDICTED: Homo sapiens uncharacterized LOC100507507 (LOC100507507), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310120114|ref|XR_108783.1| PREDICTED: Homo sapiens uncharacterized LOC100507507 (LOC100507507), misc_RNA"	NA	NA	NA	NA	NA	XR_108783.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009103	1.4652548	A	1.5952692	A	0.913822329031339	0	lncRNA	TCONS_00024852	NA	NA	NA	NA	XLOC_011734	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011734), lincRNA [TCONS_00024852]"	chr16:56158917-56166169	hs|16q12.2	Agilent_HUMAN_G3V2	TCONS_00024852	TCONS_00024852	chr16	 56158917	 56166169	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19366_PI429285431	0.90122086	A	0.9757935	A	0.949623379937181	0	lncRNA	21029-1_{1..525}	lnc-POTEC-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POTEC-4:1	chr18	 15164326	 15164850	-	lnc-POTEC-4	lnc-POTEC-4:1	ENSG00000264880.1	RP11-805F19.1	NA	NA	NA	inter
LNCA_19_P00809455	5.576524	P	6.01177	P	0.739567637083578	0	lncRNA	TCONS_00006358	NA	NA	NA	NA	XLOC_002977	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002977), lincRNA [TCONS_00006358]"	chr3:193975823-193975882	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00006358	TCONS_00006358	chr3	193975823	193975882	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13154_PI429285431	5.714468	P	5.884804	P	0.88863569607439	0	lncRNA	14781-1_{1..1013}	lnc-STK32C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STK32C-2:1	chr10	134254935	134255947	-	lnc-STK32C-2	lnc-STK32C-2:1	XLOC_009003	linc-STK32C-2	C10orf91	NA	chr10:134258714-134261825	inter
CUST_25394_PI429285431	0.89066863	A	0.8906101	A	1.00004057072745	0	lncRNA	26925-1_{1..811}	lnc-SEC16B.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC16B.1-1:1	chr1	177897094	177897904	-	lnc-SEC16B.1-1	lnc-SEC16B.1-1:1	ENSG00000233715.1	RP4-798P15.2	SEC16B	NA	chr1:177898242-177907620	inter
LNCA_21_P0007678	1.3352247	A	0.8849206	A	1.36632822934389	0	lncRNA	TCONS_00020676	NA	NA	NA	NA	XLOC_009981	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009981), lincRNA [TCONS_00020676]"	chr12:3409452-3409393	hs|12p13.32	Agilent_HUMAN_G3V2	TCONS_00020676	TCONS_00020676	chr12	  3409393	  3409452	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00318761	5.773575	P	5.832173	P	0.960196777957177	0	lncRNA	TCONS_00024895	NA	NA	NA	NA	XLOC_011803	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011803), lincRNA [TCONS_00024895]"	chr16:83966196-83966255	hs|16q23.3	Agilent_HUMAN_G3V2	TCONS_00024895	TCONS_00024895	chr16	 83966196	 83966255	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35225_PI429285431	1.2934676	A	1.1549667	A	1.10076072431417	0	lncRNA	36625-1_{1..2224}	n342215|BC035668|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4705|NULL|11.9785000|-0.0923856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342215|BC035668|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4705|NULL|11.9785000|-0.0923856	chr15	 31776243	 31778466	-	NA	NA	NA	NA	OTUD7A	NA	chr15:31775329-31947542	inner
LNCA_21_P0003725	3.5196655	P	3.5215013	P	0.998728329664795	0	lncRNA	TCONS_00008444	NA	NA	NA	NA	XLOC_003895	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003895), lincRNA [TCONS_00008444]"	chr4:16116024-16115965	hs|4p15.32	Agilent_HUMAN_G3V2	TCONS_00008444	TCONS_00008444	chr4	 16115965	 16116024	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43600_PI429285431	4.2232637	P	3.9340155	P	1.22200331597804	0	lncRNA	48363-1_{1..1143}	"gi|397138903|ref|XR_158743.1| PREDICTED: Homo sapiens family with sequence similarity 72, member C (FAM72C), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138903|ref|XR_158743.1| PREDICTED: Homo sapiens family with sequence similarity 72, member C (FAM72C), misc_RNA"	NA	NA	NA	NA	NA	XR_158743.1	NA	NA	NA	NA	NA	Unknown
CUST_44243_PI429285431	1.3904444	A	0.87476224	A	1.42966998121318	0	lncRNA	48890-3_{6001..9000}	"gi|242247281|ref|NR_027898.1| Homo sapiens collagen, type VI, alpha 4 pseudogene 2 (COL6A4P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|242247281|ref|NR_027898.1| Homo sapiens collagen, type VI, alpha 4 pseudogene 2 (COL6A4P2), non-coding RNA"	Chr3	129937663	129940662	+	646300	NR_027898.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70"	NA	inter
CUST_15879_PI429285431	0.89253986	A	1.3121626	A	0.747620098951089	0	lncRNA	17570-1_{1..619}	lnc-ATP6V1B2-5:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP6V1B2-5:10	chr8	 20832315	 20832933	+	lnc-ATP6V1B2-5	lnc-ATP6V1B2-5:10	XLOC_006734	linc-XPO7-4	NA	NA	NA	inter
CUST_45211_PI429285431	0.88522863	A	0.8778206	A	1.00514806107039	0	lncRNA	49674-1_{1..1503}	"gi|337756410|ref|NR_039979.1| Homo sapiens uncharacterized LOC100505659 (LOC100505659), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|337756410|ref|NR_039979.1| Homo sapiens uncharacterized LOC100505659 (LOC100505659), non-coding RNA"	Chr8	 67104349	 67105851	+	100505659	NR_039979.1	NA	NA	NA	"hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0,hg19_refFlat_PTPRC:range=chr1:198608399-1986633105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70"	NA	inter
CUST_15388_PI429285431	1.317782	A	2.4366343	A	0.460459987087736	0	lncRNA	17072-1_{1..2984}	lnc-GPR180-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR180-1:2	chr13	 95365892	 95368875	+	lnc-GPR180-1	lnc-GPR180-1:2	XLOC_010472	linc-CLDN10-2	SOX21	NA	chr13:95361876-95364389	inter
CUST_2747_PI429285431	0.9582538	A	2.404576	A	0.366955696898867	0	lncRNA	2731-1_{1..454}	"transcript_id ""ENST00000450458.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450458.1"" | genecode_v17"	chr7	  1731542	  1731995	-	ENSG00000234977.1	ENST00000450458.1	AC074389.7	AC074389.7-001	NA	NA	NA	inter
LNCA_21_P0006517	0.87376624	A	0.9529517	A	0.946591938002719	0	lncRNA	THC2671943	NA	NA	NA	NA	XLOC_008072	NA	NA	THC2671943	NA	"BROAD Institute lincRNA (XLOC_008072), lincRNA [TCONS_00017250]"	chrX:134174382-134174441	hs|Xq26.3	Agilent_HUMAN_G3V2	THC2671943	THC2671943	chrX	134174382	134174441	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20285_PI429285431	0.8863809	A	0.8962079	A	0.993211588729939	0	lncRNA	21928-1_{1..937}	lnc-NUMB-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUMB-4:1	chr14	 73986667	 73987603	-	lnc-NUMB-4	lnc-NUMB-4:1	ENSG00000258443.1	RP3-414A15.11	HEATR4	NA	chr14:73976667-73997352	inner
CUST_1506_PI429285431	0.9108165	A	0.8974821	A	1.00928554743393	0	lncRNA	1493-1_{1..703}	"transcript_id ""ENST00000463297.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000463297.1"" | genecode_v17"	chr3	153599315	153600017	+	ENSG00000243486.1	ENST00000463297.1	RP11-217E22.5	RP11-217E22.5-001	NA	NA	NA	inter
CUST_14505_PI429285431	0.8974792	A	0.89764553	A	0.999884715475229	0	lncRNA	16171-1_{1..337}	lnc-BASP1-3:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BASP1-3:12	chr5	 17441578	 17441914	+	lnc-BASP1-3	lnc-BASP1-3:12	XLOC_004308	linc-PRDM9-8	NA	NA	NA	inter
CUST_31750_PI429285431	5.3421736	P	5.544523	P	0.86913404282765	0	lncRNA	33491-1_{1..523}	n338287|BC015826|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|680|NULL|-1.2644500|-0.1849559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338287|BC015826|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|680|NULL|-1.2644500|-0.1849559	chr19	  7983536	  7984058	-	NA	NA	NA	NA	TIMM44	NA	chr19:7991603-7994042	inner
LNCA_21_P0011111	0.8970914	A	1.5228037	A	0.648099712866998	0	lncRNA	AK096782	NA	AK096782	NA	Hs.560002	XLOC_l2_003240	NA	NA	THC2517250	NA	"BROAD Institute lincRNA (XLOC_l2_003240), lincRNA [TCONS_l2_00006617]"	chr12:133490360-133490419	hs|12q24.33	Agilent_HUMAN_G3V2	AK096782	AK096782	chr12	133490360	133490419	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16174_PI429285431	4.1635976	P	4.1781588	P	0.989957709219966	0	lncRNA	17880-1_{1..333}	lnc-EPDR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPDR1-1:1	chr7	 38055880	 38056212	+	lnc-EPDR1-1	lnc-EPDR1-1:1	XLOC_006053	linc-STARD3NL	NA	NA	NA	inter
CUST_26255_PI429285431	4.741433	P	5.6944313	P	0.516557802527701	0	lncRNA	27762-1_{1..1176}	lnc-CTSZ-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CTSZ-4:1	chr20	 57425585	 57426760	-	lnc-CTSZ-4	lnc-CTSZ-4:1	ENSG00000235590.2	GNAS-AS1	GNAS	NA	chr20:57415585-57435958	inter
LNCA_21_P0001618	3.8100939	P	4.0922136	P	0.822381833093379	0	lncRNA	TCONS_00001807	NA	NA	NA	NA	XLOC_001194	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001194), lincRNA [TCONS_00001807]"	chr1:212687879-212679787	hs|1q32.3	Agilent_HUMAN_G3V2	TCONS_00001807	TCONS_00001807	chr1	212679787	212687879	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12590_PI429285431	2.1171813	A	2.1521778	A	0.976034128646918	0	lncRNA	14203-1_{1..435}	lnc-AC006372.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC006372.1-1:2	chr7	157296046	157296480	+	lnc-AC006372.1-1	lnc-AC006372.1-1:2	XLOC_006316	linc-WDR60-3	NA	NA	NA	inter
CUST_27495_PI429285431	12.753315	P	12.5167	P	1.17822494278481	0	lncRNA	29069-1_{1..590}	n324675|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000156189|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000156189|-0.9935360|-0.1051368	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324675|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000156189|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000156189|-0.9935360|-0.1051368	chr22	 30999406	 30999995	+	NA	NA	NA	NA	TCN2	NA	chr22:31003070-31013173	inner
LNCA_21_P0012664	1.2619275	A	0.8752179	A	1.30740815393796	0	lncRNA	THC2759281	NA	NA	NA	NA	XLOC_l2_011102	NA	NA	THC2759281	NA	"BROAD Institute lincRNA (XLOC_l2_011102), lincRNA [TCONS_l2_00021111]"	NA	NA	Agilent_HUMAN_G3V2	THC2759281	THC2759281	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33788_PI429285431	1.5543851	A	1.2678946	A	1.21966969749727	0	lncRNA	35341-1_{1..1956}	n340576|AK026824|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3038|NULL|-0.8687020|-0.2591049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340576|AK026824|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3038|NULL|-0.8687020|-0.2591049	chr17	 26729127	 26731082	+	NA	NA	NA	NA	SARM1	"hg19_refFlat_SLC46A1:range=chr17:26726672-267331325'pad=0,hg19_refFlat_SLC46A1:range=chr17:26726672-267331325'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40chr17:26719127-26728065"	NA	inner
CUST_44672_PI429285431	3.8289173	P	4.5411935	P	0.610356394094502	0	lncRNA	49233-1_{1..3000}	"gi|402693482|ref|NR_073131.1| Homo sapiens neural precursor cell expressed, developmentally down-regulated 9 (NEDD9), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402693482|ref|NR_073131.1| Homo sapiens neural precursor cell expressed, developmentally down-regulated 9 (NEDD9), transcript variant 5, non-coding RNA"	Chr6	 11183531	 11186530	-	4739	NR_073131.1	NA	NA	NA	NA	NA	inter
CUST_12352_PI429285431	1.0651176	A	0.9108417	A	1.11286292337044	0	lncRNA	13964-1_{1..271}	lnc-AEBP2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AEBP2-4:2	chr12	 20164256	 20164526	+	lnc-AEBP2-4	lnc-AEBP2-4:2	XLOC_009685	linc-PDE3A-1	NA	NA	NA	inter
CUST_11603_PI429285431	6.4844346	P	6.5837193	P	0.933495711625316	0	lncRNA	13182-2_{3001..3722}	lnc-NCOA3-5:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCOA3-5:9	chr20	 46529331	 46530052	+	lnc-NCOA3-5	lnc-NCOA3-5:9	XLOC_013543	linc-ARFGEF2-12	NA	NA	NA	inter
CUST_25664_PI429285431	0.92540365	A	1.5438293	A	0.651381364009983	0	lncRNA	27193-1_{1..843}	lnc-ARIH2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARIH2-1:1	chr3	 48885538	 48886380	+	lnc-ARIH2-1	lnc-ARIH2-1:1	ENSG00000224424.6	PRKAR2A-AS1	SLC25A20	NA	chr3:48894356-48895926	inter
CUST_611_PI429285431	9.723684	P	10.85517	P	0.456445336578242	0	lncRNA	603-1_{1..359}	"transcript_id ""ENST00000458044.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458044.1"" | genecode_v17"	chr1	235097123	235097481	-	ENSG00000238005.1	ENST00000458044.1	RP11-443B7.1	RP11-443B7.1-004	NA	NA	NA	inter
CUST_45019_PI429285431	2.3899107	A	2.2017074	A	1.13934391863432	0	lncRNA	49521-1_{1..3000}	"gi|253970400|ref|NR_028039.1| Homo sapiens GATS, stromal antigen 3 opposite strand (GATS), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|253970400|ref|NR_028039.1| Homo sapiens GATS, stromal antigen 3 opposite strand (GATS), transcript variant 3, non-coding RNA"	Chr7	 99798276	 99801275	-	352954	NR_028039.1	NA	NA	NA	"hg19_refFlat_STAG3:range=chr7:99778180-998116385'pad=0,hg19_refFlat_STAG3:range=chr7:99778180-998116385'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.60"	NA	inter
CUST_5729_PI429285431	3.0107021	P	2.7495742	A	1.19841526036664	0	lncRNA	5653-1_{1..488}	"transcript_id ""ENST00000577863.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577863.1"" | genecode_v17"	chr17	 12538483	 12538970	+	ENSG00000179136.2	ENST00000577863.1	LINC00670	LINC00670-003	NA	NA	NA	inter
LNCA_21_P0007512	0.91078365	A	0.9406355	A	0.979520879181393	0	lncRNA	THC2783449	NA	NA	NA	NA	XLOC_009622	NA	NA	THC2783449	NA	"BROAD Institute lincRNA (XLOC_009622), lincRNA [TCONS_00020275]"	chr12:003480570-003480629	hs|12p13.32	Agilent_HUMAN_G3V2	THC2783449	THC2783449	chr12	  3480570	  3480629	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006394	0.911059	A	0.9430429	A	0.978074388373461	0	lncRNA	TCONS_00016871	NA	NA	NA	NA	XLOC_007858	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007858), lincRNA [TCONS_00016871]"	chr9:130872943-130872884	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_00016871	TCONS_00016871	chr9	130872884	130872943	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014744	4.5778227	P	5.2792253	P	0.614974033125355	0	lncRNA	ENST00000442130	XR_132477	XR_132477	NA	NA	LOC100287049	NA	ENST00000442130	THC2569838	NA	"PREDICTED: Homo sapiens hypothetical LOC100287049 (LOC100287049), miscRNA [XR_132477]"	chr1:160232509-160232568	hs|1q23.2	Agilent_HUMAN_G3V2	ENST00000442130	ENST00000442130	chr1	160232509	160232568	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5014_PI429285431	5.131668	P	5.3179064	P	0.878894314888491	0	lncRNA	4954-1_{1..498}	"transcript_id ""ENST00000553584.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000553584.1"" | genecode_v17"	chr14	101361107	101361604	+	ENSG00000258399.1	ENST00000553584.1	MEG8	MEG8-002	RTL1	NA	chr14:101351107-101351184	inter
CUST_22010_PI429285431	1.249458	A	1.4912403	A	0.845699892291369	0	lncRNA	23619-1_{1..499}	lnc-PAPSS2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PAPSS2-2:1	chr10	 89640057	 89640555	+	lnc-PAPSS2-2	lnc-PAPSS2-2:1	ENSG00000224745.1	RP11-380G5.2	PTEN	NA	chr10:89630057-89650184	inner
LNCA_21_P0005488	1.9621899	A	2.8565397	A	0.537989604066052	0	lncRNA	TCONS_00013775	NA	NA	NA	NA	XLOC_006407	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006407), lincRNA [TCONS_00013775]"	chr7:35411971-35411912	hs|7p14.2	Agilent_HUMAN_G3V2	TCONS_00013775	TCONS_00013775	chr7	 35411912	 35411971	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42041_PI429285431	2.6795373	A	2.8241603	A	0.904615737684065	0	lncRNA	43925-1_{1..94}	ENST00000362302 ncrna:miRNA chromosome:GRCh37:12:95702196:95702289:1 gene:ENSG00000199172 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362302 ncrna:miRNA chromosome:GRCh37:12:95702196:95702289:1 gene:ENSG00000199172 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 95702196	 95702289	+	ENSG00000199172	ENST00000362302	NA	NA	VEZT	NA	chr12:95692196-95696566	inter
CUST_47793_PI429285431	0.8877944	A	0.897247	A	0.993469374792651	0	lncRNA	51714-1_{1..512}	"gi|264681548|ref|NR_001527.2| Homo sapiens testis-specific transcript, Y-linked 6 (non-protein coding) (TTTY6), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|264681548|ref|NR_001527.2| Homo sapiens testis-specific transcript, Y-linked 6 (non-protein coding) (TTTY6), non-coding RNA"	NA	NA	NA	NA	NA	NR_001527.2	NA	NA	NA	NA	NA	Unknown
CUST_45961_PI429285431	4.499607	P	3.008955	P	2.8101594654222	0	lncRNA	50254-1_{1..1884}	"gi|380034212|ref|NR_046433.1| Homo sapiens RAD9-HUS1-RAD1 interacting nuclear orphan 1 (RHNO1), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|380034212|ref|NR_046433.1| Homo sapiens RAD9-HUS1-RAD1 interacting nuclear orphan 1 (RHNO1), transcript variant 7, non-coding RNA"	Chr12	  2985424	  2987307	+	83695	NR_046433.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30"	NA	inter
CUST_37687_PI429285431	4.891544	P	4.962786	P	0.951818235575421	0	lncRNA	38779-1_{1..446}	n346175|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1725|NULL|-1.3716200|-0.1948273	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346175|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1725|NULL|-1.3716200|-0.1948273	chr15	 31120003	 31120448	+	NA	NA	NA	NA	FAN1	NA	chr15:31117044-31137280	inter
CUST_5766_PI429285431	5.202303	P	5.1954556	P	1.00475753731813	0	lncRNA	5690-2_{3001..3370}	"transcript_id ""ENST00000577087.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577087.2"" | genecode_v17"	chr17	 19625372	 19625741	+	ENSG00000262681.2	ENST00000577087.2	RP11-311F12.1	RP11-311F12.1-001	SLC47A2	NA	chr17:19612372-19620043	inter
CUST_44781_PI429285431	6.3892093	P	6.670809	P	0.822678302976913	0	lncRNA	49320-1_{1..761}	"gi|262118228|ref|NR_029466.1| Homo sapiens cytochrome c oxidase subunit VIIa polypeptide 2 (liver) (COX7A2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|262118228|ref|NR_029466.1| Homo sapiens cytochrome c oxidase subunit VIIa polypeptide 2 (liver) (COX7A2), transcript variant 2, non-coding RNA"	Chr6	 75947391	 75948151	-	1347	NR_029466.1	NA	NA	NA	NA	NA	inter
CUST_7473_PI429285431	6.5581293	P	6.4521804	P	1.0762020052264	0	lncRNA	9115-1_{1..523}	lnc-CAMK1G-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CAMK1G-1:6	chr1	209603770	209604292	+	lnc-CAMK1G-1	lnc-CAMK1G-1:6	ENSG00000230937	CTA-55I10.1	LOC642587	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90chr1:209602168-209605894"	NA	inner
CUST_20879_PI429285431	5.79914	P	5.766205	P	1.02309137375745	0	lncRNA	22511-1_{1..450}	lnc-NPB-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPB-3:1	chr17	 79890872	 79891321	+	lnc-NPB-3	lnc-NPB-3:1	ENSG00000263585.1	RP11-498C9.13	MYADML2	NA	chr17:79897521-79900934	inner
CUST_2544_PI429285431	2.62014	A	2.9988425	P	0.76912900236423	0	lncRNA	2532-1_{1..315}	"transcript_id ""ENST00000456887.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456887.1"" | genecode_v17"	chr6	 57690895	 57691209	+	ENSG00000231273.1	ENST00000456887.1	RP11-343D24.2	RP11-343D24.2-001	NA	NA	NA	inter
CUST_38162_PI429285431	8.383284	P	8.666699	P	0.821643802462396	0	lncRNA	39233-1_{1..2874}	n381403|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ikr.1||-0.8901500|-0.2348147	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381403|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ikr.1||-0.8901500|-0.2348147	chr10	 11295753	 11298626	+	NA	NA	NA	NA	CELF2	NA	chr10:11285753-11308627	inner
LNCA_21_P0007754	1.9436026	A	0.8824799	A	2.08655463923092	0	lncRNA	TCONS_00020906	NA	NA	NA	NA	XLOC_010185	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010185), lincRNA [TCONS_00020906]"	chr12:106180121-106180062	hs|12q23.3	Agilent_HUMAN_G3V2	TCONS_00020906	TCONS_00020906	chr12	106180062	106180121	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007115	2.0130582	A	2.0483284	A	0.975848978497482	0	lncRNA	TCONS_00019032	NA	NA	NA	NA	XLOC_008957	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008957), lincRNA [TCONS_00019032]"	chr10:116581048-116579688	hs|10q25.3	Agilent_HUMAN_G3V2	TCONS_00019032	TCONS_00019032	chr10	116579688	116581048	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27640_PI429285431	1.0596935	A	1.270355	A	0.864140917276541	0	lncRNA	29218-1_{1..1476}	n324846|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171189|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171189|-1.0912200|-0.3586603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324846|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171189|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171189|-1.0912200|-0.3586603	chr21	 25680003	 25681478	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27594_PI429285431	0.8905958	A	1.0159388	A	0.916786051882242	0	lncRNA	29173-1_{1..1133}	n324797|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194710|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194710|-1.2487100|-0.3230806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324797|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000194710|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000194710|-1.2487100|-0.3230806	chr21	 36926848	 36927980	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_738_PI429285431	1.813472	A	1.1030132	A	1.63632441160392	0	lncRNA	730-1_{1..565}	"transcript_id ""ENST00000425678.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425678.1"" | genecode_v17"	chr2	  8741022	  8741586	-	ENSG00000231083.1	ENST00000425678.1	AC011747.6	AC011747.6-001	NA	NA	NA	inter
CUST_15910_PI429285431	1.0733379	A	0.8878612	A	1.13719266607285	0	lncRNA	17605-1_{1..248}	lnc-CPN2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPN2-2:2	chr3	193928403	193928650	-	lnc-CPN2-2	lnc-CPN2-2:2	XLOC_003384	linc-ATP13A4-7	NA	NA	NA	inter
CUST_26293_PI429285431	8.098747	P	8.102923	P	0.997109602639098	0	lncRNA	27799-1_{1..2834}	lnc-SULT1A3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SULT1A3.1-1:1	chr16	 30215129	 30217962	+	lnc-SULT1A3.1-1	lnc-SULT1A3.1-1:1	ENSG00000213599.5	SULT1A3	SULT1A3	NA	chr16:30210549-30215650	inner
LNCA_21_P0009388	2.054869	A	1.8972514	A	1.11544362422884	0	lncRNA	TCONS_00025895	NA	NA	NA	NA	XLOC_012171	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012171), lincRNA [TCONS_00025895]"	chr17:31277095-31277154	hs|17q11.2	Agilent_HUMAN_G3V2	TCONS_00025895	TCONS_00025895	chr17	 31277095	 31277154	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33659_PI429285431	1.5120839	A	0.87636924	A	1.55370721089972	0	lncRNA	35222-1_{1..3000}	n340423|X51779|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2884|NULL|-0.2590490|-0.2912712	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340423|X51779|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2884|NULL|-0.2590490|-0.2912712	chr5	 29979775	 29982774	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-60.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90"	NA	inter
CUST_18552_PI429285431	5.3611574	P	5.526855	P	0.891497341028004	0	lncRNA	20263-1_{1..2584}	lnc-LGALS14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LGALS14-1:1	chr19	 40174127	 40176710	+	lnc-LGALS14-1	lnc-LGALS14-1:1	ENSG00000226025	AC093063.1	NA	NA	NA	inter
CUST_4422_PI429285431	1.0170141	A	0.9112415	A	1.07607049938791	0	lncRNA	4372-1_{1..441}	"transcript_id ""ENST00000549163.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549163.1"" | genecode_v17"	chr12	116193067	116193507	+	ENSG00000257781.1	ENST00000549163.1	RP11-110L15.1	RP11-110L15.1-001	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80"	NA	inter
CUST_1156_PI429285431	3.5511267	P	3.7111313	P	0.895022217165642	0	lncRNA	1145-1_{1..950}	"transcript_id ""ENST00000448117.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000448117.1"" | genecode_v17"	chr2	172967734	172968683	+	ENSG00000236651.1	ENST00000448117.1	AC104801.1	AC104801.1-001	DLX2	NA	chr2:172964166-172967478	inter
CUST_29346_PI429285431	2.7057228	A	2.0715504	A	1.55204716489148	0	lncRNA	31098-1_{1..474}	n332599|AK000015|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000002490|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000002490|1.2632400|-0.3562177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332599|AK000015|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000002490|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000002490|1.2632400|-0.3562177	chr1	104080050	104080523	+	NA	NA	NA	NA	RNPC3	NA	chr1:104070050-104097705	inner
CUST_26483_PI429285431	3.0296364	A	3.0815578	A	0.964650738644778	0	lncRNA	27992-1_{1..388}	lnc-GPN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPN2-1:1	chr1	 27218709	 27219096	-	lnc-GPN2-1	lnc-GPN2-1:1	ENSG00000251020.1	RP1-50O24.8	GPN2	"hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10chr1:27208709-27216869"	NA	inner
LNCA_33_P3409245	13.590958	P	13.932463	P	0.789217581154154	0	lncRNA	XR_110199	XR_110199	XR_110199	   401286	Hs.487182	LOC401286	uncharacterized LOC401286	NA	NP852283	NA	"PREDICTED: Homo sapiens hypothetical LOC401286 (LOC401286), miscRNA [XR_110199]"	chr6:168067630-168067571	hs|6q27	Agilent_HUMAN_G3V2	XR_110199	XR_110199	chr6	168067571	168067630	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33584_PI429285431	0.88603723	A	0.8804778	A	1.00386093751988	0	lncRNA	35149-1_{1..233}	n340337|AF009309|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2798|NULL|-1.4873000|-0.3007785	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340337|AF009309|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2798|NULL|-1.4873000|-0.3007785	chr5	  9319865	  9320097	+	NA	NA	NA	NA	SEMA5A	NA	chr5:9309865-9330098	inner
CUST_47260_PI429285431	13.658764	P	13.687345	P	0.980384105649329	0	lncRNA	51332-1_{1..959}	"gi|392494085|ref|NR_052022.1| Homo sapiens eukaryotic translation initiation factor 6 (EIF6), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392494085|ref|NR_052022.1| Homo sapiens eukaryotic translation initiation factor 6 (EIF6), transcript variant 7, non-coding RNA"	Chr20	 33866709	 33867667	-	3692	NR_052022.1	NA	NA	NA	NA	NA	inter
CUST_42514_PI429285431	6.871545	P	6.982934	P	0.925696389419332	0	lncRNA	45299-1_{1..72}	ENST00000365178 ncrna:snoRNA chromosome:GRCh37:14:101447341:101447412:1 gene:ENSG00000202048 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365178 ncrna:snoRNA chromosome:GRCh37:14:101447341:101447412:1 gene:ENSG00000202048 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101447341	101447412	+	ENSG00000202048	ENST00000365178	NA	NA	NA	NA	NA	inter
LNCA_21_P0014856	0.8724404	A	1.1258676	A	0.838901191215933	0	lncRNA	XR_132740	XR_132740	XR_132740	NA	Hs.640494	LOC100652904	uncharacterized LOC100652904	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652904 (LOC100652904), miscRNA [XR_132740]"	chr18:72912810-72912869	hs|18q22.3	Agilent_HUMAN_G3V2	XR_132740	XR_132740	chr18	 72912810	 72912869	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36540_PI429285431	1.7209525	A	1.5892712	A	1.09556972178209	0	lncRNA	37738-1_{1..3000}	n345040|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_589|NULL|-1.5199600|-0.3595128	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345040|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_589|NULL|-1.5199600|-0.3595128	chr9	  2779833	  2782832	-	NA	NA	NA	NA	KIAA0020	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10chr9:2804152-2807685"	NA	inter
LNCA_21_P0004708	2.6696959	A	3.4539123	P	0.580667261054169	0	lncRNA	ENST00000457340	NA	NA	NA	NA	XLOC_005543	NA	ENST00000457340	NA	NA	"BROAD Institute lincRNA (XLOC_005543), lincRNA [TCONS_00011416]"	chr6:168595289-168595348	hs|6q27	Agilent_HUMAN_G3V2	ENST00000457340	ENST00000457340	chr6	168595289	168595348	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38290_PI429285431	6.2159963	P	4.2471294	P	3.91460543169335	0	lncRNA	39343-2_{3001..3836}	n381928|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tkz.2||-0.7173540|-0.2756519	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381928|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tkz.2||-0.7173540|-0.2756519	chr12	105154947	105155782	+	NA	NA	NA	NA	CHST11	NA	chr12:105141947-105155792	inner
CUST_3282_PI429285431	10.402031	P	10.344078	P	1.04098768392082	0	lncRNA	3260-1_{1..522}	"transcript_id ""ENST00000574086.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000574086.1"" | genecode_v17"	chr8	121066919	121067440	+	ENSG00000254343.2	ENST00000574086.1	RP11-760H22.2	RP11-760H22.2-002	DEPTOR	NA	chr8:121056919-121063157	inter
CUST_39430_PI429285431	0.9191959	A	0.9028384	A	1.0114026755027	0	lncRNA	40381-10_{27001..30000}	n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	chr13	 19435542	 19438541	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_20443_PI429285431	7.281962	P	7.243318	P	1.02714794866966	0	lncRNA	22087-1_{1..684}	lnc-GLUD1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLUD1-4:3	chr10	 89101999	 89102682	-	lnc-GLUD1-4	lnc-GLUD1-4:3	ENSG00000223482.1	RP11-322M19.1	NA	NA	NA	inter
CUST_34300_PI429285431	0.91157264	A	0.912568	A	0.999310306970009	0	lncRNA	35797-1_{1..3000}	n341160|BC028622|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3626|NULL|0.4923630|-0.2054613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341160|BC028622|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3626|NULL|0.4923630|-0.2054613	chr11	132934585	132937584	+	NA	NA	NA	NA	OPCML	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70chr11:132924585-132948017"	NA	inner
LNCA_21_P0002726	0.91079926	A	1.8777039	A	0.511602549918532	0	lncRNA	ENST00000440266	NA	NA	NA	NA	XLOC_002575	NA	ENST00000440266	THC2748310	NA	"BROAD Institute lincRNA (XLOC_002575), lincRNA [TCONS_00005494]"	chr3:10813339-10813398	hs|3p25.3	Agilent_HUMAN_G3V2	ENST00000440266	ENST00000440266	chr3	 10813339	 10813398	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41114_PI429285431	6.3363433	P	6.4042587	P	0.954015492615712	0	lncRNA	41869-1_{1..78}	ENST00000401190 ncrna:miRNA chromosome:GRCh37:5:136983261:136983338:-1 gene:ENSG00000216009 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401190 ncrna:miRNA chromosome:GRCh37:5:136983261:136983338:-1 gene:ENSG00000216009 gene_biotype:miRNA transcript_biotype:miRNA	chr5	136983261	136983338	-	ENSG00000216009	ENST00000401190	NA	NA	KLHL3	NA	chr5:136973261-136993338	inner
CUST_44400_PI429285431	1.7079448	A	0.9022367	A	1.74800353207524	0	lncRNA	49016-1_{1..3000}	"gi|363807338|ref|NR_045644.1| Homo sapiens SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 (SMARCAD1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|363807338|ref|NR_045644.1| Homo sapiens SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 (SMARCAD1), transcript variant 5, non-coding RNA"	Chr4	 95129235	 95132234	+	56916	NR_045644.1	NA	NA	NA	NA	NA	inter
CUST_38223_PI429285431	1.0974418	A	1.01516	A	1.05869116763539	0	lncRNA	39287-1_{1..886}	n381598|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lxz.1||4.5236500|-0.1696792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381598|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lxz.1||4.5236500|-0.1696792	chr11	  3638461	  3639346	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012019	0.907368	A	0.9288208	A	0.9852400638747	0	lncRNA	XR_109876	XR_109876	XR_109876	NA	NA	LOC100506563	uncharacterized LOC100506563	ENST00000458252	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506563 (LOC100506563), miscRNA [XR_109876]"	chr2:110516813-110516754	hs|2q13	Agilent_HUMAN_G3V2	XR_109876	XR_109876	chr2	110516754	110516813	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007087	2.0260894	A	1.9391189	A	1.06213746785438	0	lncRNA	TCONS_00018856	NA	NA	NA	NA	XLOC_008661	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008661), lincRNA [TCONS_00018856]"	chr10:127375276-127375335	hs|10q26.13	Agilent_HUMAN_G3V2	TCONS_00018856	TCONS_00018856	chr10	127375276	127375335	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51142_PI429285431	1.0857735	A	1.0674765	A	1.01276327811258	0	lncRNA	54768-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00007750 range=chr14:60385849-60531120 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007750 range=chr14:60385849-60531120 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 60388849	 60391848	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30887_PI429285431	5.1764107	P	5.853818	P	0.625287984552715	0	lncRNA	32675-1_{1..489}	n336898|AY927489|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332651|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332651|-1.0801900|-0.3301922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336898|AY927489|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332651|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332651|-1.0801900|-0.3301922	chr19	  6680188	  6680676	+	NA	NA	NA	NA	C3	"hg19_refFlat_C3:range=chr19:6677893-67206005'pad=0,hg19_refFlat_C3:range=chr19:6677893-67206005'pad=0 3'pad=0 strand=- repeatMasking=none,-97.10chr19:6677846-6720662"	NA	inner
CUST_30295_PI429285431	1.6405481	A	0.9225905	A	1.64485179544066	0	lncRNA	32071-1_{1..273}	n335195|AY456127|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254783|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254783|-1.1204800|-0.1129572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335195|AY456127|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254783|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254783|-1.1204800|-0.1129572	chr7	136553832	136554104	+	NA	NA	NA	NA	CHRM2	NA	chr7:136553399-136701771	inter
LNCA_21_P0011009	0.89553475	A	1.9594847	A	0.478320672666717	0	lncRNA	TCONS_l2_00005006	NA	NA	NA	NA	XLOC_l2_002651	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002651), lincRNA [TCONS_l2_00005006]"	chr11:50244244-50244185	hs|11p11.12	Agilent_HUMAN_G3V2	TCONS_l2_00005006	TCONS_l2_00005006	chr11	 50244185	 50244244	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17275_PI429285431	6.2540145	P	6.3968434	P	0.905741395297648	0	lncRNA	18993-1_{1..369}	lnc-QSOX2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-QSOX2-1:6	chr9	139166729	139167097	-	lnc-QSOX2-1	lnc-QSOX2-1:6	XLOC_007895	linc-QSOX2	NA	NA	NA	inter
CUST_47348_PI429285431	1.5823581	A	1.4586135	A	1.089559210701	0	lncRNA	51399-1_{1..1867}	"gi|310124038|ref|XR_109656.1| PREDICTED: Homo sapiens uncharacterized LOC441956 (LOC441956), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124038|ref|XR_109656.1| PREDICTED: Homo sapiens uncharacterized LOC441956 (LOC441956), misc_RNA"	Chr21	 15051627	 15053493	-	441956	XR_109656.2	NA	NA	NA	NA	NA	inter
CUST_13083_PI429285431	1.9925659	A	2.2194853	A	0.854457476098405	0	lncRNA	14710-1_{1..293}	lnc-C11orf36-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C11orf36-2:1	chr11	  3210940	  3211232	+	lnc-C11orf36-2	lnc-C11orf36-2:1	XLOC_009029	linc-ART1-5	NA	NA	NA	inter
CUST_26028_PI429285431	3.7996278	P	4.0357904	P	0.849000553825875	0	lncRNA	27547-1_{1..1696}	lnc-ANKRD11-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD11-6:1	chr16	 89266180	 89267875	-	lnc-ANKRD11-6	lnc-ANKRD11-6:1	ENSG00000259803.1	RP11-46C24.8	CDH15	NA	chr16:89256180-89261900	inner
CUST_22105_PI429285431	2.569649	A	3.7541566	P	0.439974678190979	0	lncRNA	23710-1_{1..753}	lnc-TCP11L2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCP11L2-2:1	chr12	106499545	106500297	+	lnc-TCP11L2-2	lnc-TCP11L2-2:1	ENSG00000257438.1	RP11-114F10.3	NUAK1	NA	chr12:106489545-106509943	inner
CUST_46594_PI429285431	1.6020952	A	2.05226	A	0.731959231014441	0	lncRNA	50776-1_{1..1314}	"gi|195539323|ref|NR_024049.1| Homo sapiens breast cancer anti-estrogen resistance 4 (non-protein coding) (BCAR4), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|195539323|ref|NR_024049.1| Homo sapiens breast cancer anti-estrogen resistance 4 (non-protein coding) (BCAR4), non-coding RNA"	Chr16	 11913687	 11915000	-	400500	NR_024049.1	NA	NA	NA	NA	NA	inter
CUST_25164_PI429285431	0.8952701	A	0.91196984	A	0.988491359237392	0	lncRNA	26700-2_{3001..4310}	lnc-SPAM1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPAM1-3:1	chr7	124034483	124035792	+	lnc-SPAM1-3	lnc-SPAM1-3:1	ENSG00000242593.1	RP5-921G16.1	NA	"hg19_refFlat_TMEM229A:range=chr7:123671915-1236730575'pad=0,hg19_refFlat_TMEM229A:range=chr7:123671915-1236730575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00"	NA	inter
CUST_43633_PI429285431	14.395073	P	14.935202	P	0.687709414105052	0	lncRNA	48392-1_{1..1716}	"gi|383792155|ref|NR_047545.1| Homo sapiens lamin A/C (LMNA), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|383792155|ref|NR_047545.1| Homo sapiens lamin A/C (LMNA), transcript variant 5, non-coding RNA"	Chr1	156095951	156097666	+	4000	NR_047545.1	NA	NA	NA	NA	NA	inter
CUST_19819_PI429285431	0.8856277	A	0.88624257	A	0.99957389540145	0	lncRNA	21476-1_{1..674}	lnc-ITSN2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITSN2-2:1	chr2	 24397377	 24398050	-	lnc-ITSN2-2	lnc-ITSN2-2:1	ENSG00000232642.1	AC008073.7	LOC375190	NA	chr2:24387377-24392507	inter
LNCA_21_P0014336	5.3495483	P	5.2914853	P	1.04106705829137	0	lncRNA	XR_109337	XR_109337	XR_109337	NA	Hs.650117	LOC100506735	uncharacterized LOC100506735	NA	THC2522240	NA	"PREDICTED: Homo sapiens hypothetical LOC100506735 (LOC100506735), miscRNA [XR_109337]"	chr16:88217376-88217317	hs|16q24.2	Agilent_HUMAN_G3V2	XR_109337	XR_109337	chr16	 88217317	 88217376	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42096_PI429285431	1.0406047	A	1.0944111	A	0.963391165980363	0	lncRNA	44037-1_{1..96}	ENST00000384828 ncrna:miRNA chromosome:GRCh37:4:166307394:166307489:1 gene:ENSG00000207559 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384828 ncrna:miRNA chromosome:GRCh37:4:166307394:166307489:1 gene:ENSG00000207559 gene_biotype:miRNA transcript_biotype:miRNA	chr4	166307394	166307489	+	ENSG00000207559	ENST00000384828	NA	NA	CPE	NA	chr4:166300097-166317489	inner
CUST_19947_PI429285431	5.799863	P	4.4614277	P	2.52876907963509	0	lncRNA	21602-1_{1..120}	lnc-PPIAL4G-5:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPIAL4G-5:7	chr1	143237680	143237799	-	lnc-PPIAL4G-5	lnc-PPIAL4G-5:7	ENSG00000225278.1	BX571672.5	NA	NA	NA	inter
CUST_6030_PI429285431	5.3225665	P	4.562954	P	1.69303582348377	0	lncRNA	5956-1_{1..492}	"transcript_id ""ENST00000580242.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580242.1"" | genecode_v17"	chr18	   316740	   317231	-	ENSG00000264433.1	ENST00000580242.1	RP11-720L2.3	RP11-720L2.3-001	COLEC12	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70chr18:319355-327366"	NA	inter
LNCA_23_P44663	5.9876895	P	6.111043	P	0.918051186926259	0	lncRNA	XR_110240	XR_110240	XR_110240	   390502	Hs.666160	SERPINA2	"serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 2"	NA	THC2540570	GO:0030162|GO:0010951|GO:0004867|GO:0005576|GO:0030414	"PREDICTED: Homo sapiens serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 2 (SERPINA2), miscRNA [XR_110240]"	chr14:94832572-94832513	hs|14q32.13	Agilent_HUMAN_G3V2	XR_110240	XR_110240	chr14	 94832513	 94832572	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52204_PI429285431	5.027125	P	5.076766	P	0.966176722272761	0	lncRNA	55721-1_{1..258}	hg19_lincRNAsTranscripts_TCONS_l2_00017775 range=chr22:41454665-41470331 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017775 range=chr22:41454665-41470331 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 41454665	 41454922	+	NA	NA	NA	NA	NA	"hg19_refFlat_ACTB:range=chr7:5567379-55692885'pad=0,hg19_refFlat_ACTB:range=chr7:5567379-55692885'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_POTEF:range=chr2:130831817-1308780885'pad=0,hg19_refFlat_POTEF:range=chr2:130831817-1308780885'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_POTEE:range=chr2:131975976-1320222565'pad=0,hg19_refFlat_POTEE:range=chr2:131975976-1320222565'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ACTG1:range=chr17:79477716-794793805'pad=0,hg19_refFlat_ACTG1:range=chr17:79477716-794793805'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ACTA1:range=chr1:229567246-2295688625'pad=0,hg19_refFlat_ACTA1:range=chr1:229567246-2295688625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50"	NA	inter
CUST_15049_PI429285431	0.8792708	A	0.8876114	A	0.994235415970881	0	lncRNA	16712-1_{1..707}	lnc-GPR27-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR27-1:4	chr3	 71835368	 71836074	+	lnc-GPR27-1	lnc-GPR27-1:4	XLOC_002701	linc-GXYLT2-3	PROK2	NA	chr3:71825368-71834357	inter
CUST_49775_PI429285431	3.9938657	P	3.7778528	P	1.16151911771704	0	lncRNA	53535-1_{1..948}	hg19_lincRNAsTranscripts_TCONS_l2_00025883 range=chr7:55839706-55846856 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025883 range=chr7:55839706-55846856 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 55839706	 55840653	+	NA	NA	NA	NA	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40"	NA	inter
LNCA_21_P0002625	0.87388253	A	0.87546915	A	0.998900843336078	0	lncRNA	TCONS_00004995	NA	NA	NA	NA	XLOC_001833	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001833), lincRNA [TCONS_00004995]"	chr2:213675881-213681840	hs|2q34	Agilent_HUMAN_G3V2	TCONS_00004995	TCONS_00004995	chr2	213675881	213681840	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37686_PI429285431	1.9625884	A	1.6782854	A	1.21782176311148	0	lncRNA	38778-1_{1..443}	n346174|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1724|NULL|-1.3737700|-0.2384927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346174|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1724|NULL|-1.3737700|-0.2384927	chr3	115507499	115507941	-	NA	NA	NA	NA	LSAMP	NA	chr3:115521210-115521378	inter
CUST_46250_PI429285431	1.1003716	A	0.92356646	A	1.13037788044898	0	lncRNA	50489-1_{1..655}	"gi|388596718|ref|NR_046991.1| Homo sapiens long intergenic non-protein coding RNA 353 (LINC00353), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388596718|ref|NR_046991.1| Homo sapiens long intergenic non-protein coding RNA 353 (LINC00353), non-coding RNA"	Chr13	 90201048	 90201702	-	100874139	NR_046991.1	NA	NA	NA	NA	NA	inter
CUST_30300_PI429285431	2.1898441	A	2.6234343	A	0.74041693583258	0	lncRNA	32076-1_{1..209}	n335201|AY495089|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254939|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254939|-0.7113160|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335201|AY495089|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254939|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254939|-0.7113160|-1.0000000	chr11	 72319755	 72319963	-	NA	NA	NA	NA	PDE2A	NA	chr11:72309755-72363467	inner
CUST_4854_PI429285431	0.892616	A	0.8976719	A	0.996501650702715	0	lncRNA	4797-1_{1..580}	"transcript_id ""ENST00000554138.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554138.1"" | genecode_v17"	chr14	 62278692	 62279271	+	ENSG00000258882.1	ENST00000554138.1	CTD-2277K2.1	CTD-2277K2.1-001	NA	NA	NA	inter
CUST_9261_PI429285431	1.2307806	A	1.3450396	A	0.923856702073234	0	lncRNA	10768-1_{1..2253}	lnc-C20orf96-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C20orf96-1:1	chr20	   278867	   281119	-	lnc-C20orf96-1	lnc-C20orf96-1:1	ENSG00000247315	ENST00000500893	C20orf96	"hg19_refFlat_ZCCHC3:range=chr20:278228-2794425'pad=0,hg19_refFlat_ZCCHC3:range=chr20:278228-2794425'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.20chr20:268867-271419"	NA	inner
CUST_15202_PI429285431	0.8846121	A	0.8750702	A	1.00663586149062	0	lncRNA	16870-1_{1..304}	lnc-MSR1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MSR1-1:2	chr8	 16535016	 16535319	-	lnc-MSR1-1	lnc-MSR1-1:2	XLOC_007014	linc-MSR1-2	NA	NA	NA	inter
CUST_45420_PI429285431	2.491056	A	2.372331	A	1.08577487110321	0	lncRNA	49844-1_{1..3000}	"gi|224493710|ref|NR_027125.1| Homo sapiens RNA binding motif protein 18 (RBM18), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224493710|ref|NR_027125.1| Homo sapiens RNA binding motif protein 18 (RBM18), transcript variant 2, non-coding RNA"	Chr9	125001834	125004833	-	92400	NR_027125.1	NA	NA	NA	NA	NA	inter
CUST_16191_PI429285431	0.88601005	A	0.8818983	A	1.00285411316737	0	lncRNA	17896-1_{1..249}	lnc-GRHL2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRHL2-5:1	chr8	102166260	102166508	+	lnc-GRHL2-5	lnc-GRHL2-5:1	XLOC_006887	linc-GRHL2-3	NA	NA	NA	inter
CUST_42773_PI429285431	6.774191	P	6.68836	P	1.06129887912876	0	lncRNA	45756-1_{1..67}	ENST00000458893 ncrna:snoRNA chromosome:GRCh37:17:27047568:27047634:1 gene:ENSG00000238423 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000458893 ncrna:snoRNA chromosome:GRCh37:17:27047568:27047634:1 gene:ENSG00000238423 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 27047568	 27047634	+	ENSG00000238423	ENST00000458893	NA	NA	RPL23A	NA	chr17:27047000-27051374	inner
CUST_262_PI429201921	8.450918	P	8.277996	P	1.1273394603486	0	lncRNA	192-3_{6001..6555}	TC01005702.hg.1	TCONS_l2_00002597-XLOC_l2_001050 // Broad TUCP // linc-DENND2D chr1:-:111927140-111932473 // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00002598-XLOC_l2_001050 // Broad TUCP // linc-DENND2D chr1:-:111930958-111933696 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:111927140-111932473	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00002597-XLOC_l2_001050	linc-DENND2D	chr1	111927140	111932473	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20346_PI429285431	0.9052921	A	0.9093673	A	0.997179272358901	0	lncRNA	21988-1_{1..776}	lnc-CD44-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CD44-1:1	chr11	 35306884	 35307659	+	lnc-CD44-1	lnc-CD44-1:1	ENSG00000255004.1	RP1-68D18.3	SLC1A2	NA	chr11:35296884-35317556	inner
LNCA_21_P0007449	3.4913306	P	3.3414426	P	1.1094833367768	0	lncRNA	TCONS_00019986	NA	NA	NA	NA	XLOC_009261	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009261), lincRNA [TCONS_00019986]"	chr11:102548457-102548516	hs|11q22.2	Agilent_HUMAN_G3V2	TCONS_00019986	TCONS_00019986	chr11	102548457	102548516	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17248_PI429285431	3.0027423	A	3.3738353	P	0.773196493524633	0	lncRNA	18966-1_{1..299}	lnc-AC021218.2.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC021218.2.1-2:2	chr7	156017658	156017956	+	lnc-AC021218.2.1-2	lnc-AC021218.2.1-2:2	XLOC_006308	linc-RNF32-1	NA	NA	NA	inter
CUST_6343_PI429285431	0.90263295	A	0.89143264	A	1.00779367711643	0	lncRNA	6267-1_{1..164}	"transcript_id ""ENST00000589512.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589512.1"" | genecode_v17"	chr19	 14378619	 14378782	-	ENSG00000267406.1	ENST00000589512.1	CTD-2189E23.2	CTD-2189E23.2-001	NA	NA	NA	inter
CUST_1578_PI429285431	5.0639477	P	5.111209	P	0.967771728824793	0	lncRNA	1567-1_{1..772}	"transcript_id ""ENST00000481234.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000481234.1"" | genecode_v17"	chr3	181251965	181252736	-	ENSG00000239381.1	ENST00000481234.1	RP11-4B14.3	RP11-4B14.3-003	NA	NA	NA	inter
CUST_45545_PI429285431	0.8851151	A	0.890168	A	0.996503722871798	0	lncRNA	49946-1_{1..2149}	"gi|397139360|ref|XR_158861.1| PREDICTED: Homo sapiens chromosome 10 open reading frame 126 (C10orf126), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139360|ref|XR_158861.1| PREDICTED: Homo sapiens chromosome 10 open reading frame 126 (C10orf126), misc_RNA"	NA	NA	NA	NA	NA	XR_158861.1	NA	NA	NA	NA	NA	Unknown
CUST_23024_PI429285431	6.5722704	P	6.7956223	P	0.856572995291047	0	lncRNA	24596-1_{1..359}	lnc-LRRTM1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRTM1-2:1	chr2	 80843545	 80843903	-	lnc-LRRTM1-2	lnc-LRRTM1-2:1	ENSG00000237031.1	AC008067.2	CTNNA2	NA	chr2:80833545-80853663	inner
CUST_25644_PI429285431	6.6747403	P	6.191847	P	1.39754360737479	0	lncRNA	27174-1_{1..622}	lnc-LRTM2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-LRTM2-4:1	chr12	  2397834	  2398455	+	lnc-LRTM2-4	lnc-LRTM2-4:1	ENSG00000256721.1	CACNA1C-IT3	CACNA1C	NA	chr12:2387834-2408103	inner
LNCA_19_P00320314	9.615217	P	9.693191	P	0.947387144092342	0	lncRNA	XR_108575	XR_108575	XR_108575	NA	Hs.535791	FLJ32255	uncharacterized LOC643977	NA	THC2604473	NA	"PREDICTED: Homo sapiens hypothetical LOC643977 (FLJ32255), miscRNA [XR_108575]"	chr5:42991256-42991197	hs|5p12	Agilent_HUMAN_G3V2	XR_108575	XR_108575	chr5	 42991197	 42991256	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31723_PI429285431	0.88993603	A	0.90331024	A	0.990772540767927	0	lncRNA	33464-1_{1..619}	n338253|AF085929|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|646|NULL|-1.3361100|-0.2939001	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338253|AF085929|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|646|NULL|-1.3361100|-0.2939001	chr14	 36195078	 36195696	+	NA	NA	NA	NA	RALGAPA1	NA	chr14:36185078-36205682	inner
LNCA_21_P0012572	0.90812343	A	0.9297708	A	0.985107197795848	0	lncRNA	TCONS_l2_00020408	NA	NA	NA	NA	XLOC_l2_010573	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010573), lincRNA [TCONS_l2_00020408]"	chr4:9735190-9735249	hs|4p16.1	Agilent_HUMAN_G3V2	TCONS_l2_00020408	TCONS_l2_00020408	chr4	  9735190	  9735249	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41325_PI429285431	6.6162114	P	7.0140896	P	0.758973700384789	0	lncRNA	42371-1_{1..109}	ENST00000577791 ncrna:miRNA chromosome:GRCh37:9:130452966:130453074:-1 gene:ENSG00000264329 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577791 ncrna:miRNA chromosome:GRCh37:9:130452966:130453074:-1 gene:ENSG00000264329 gene_biotype:miRNA transcript_biotype:miRNA	chr9	130452966	130453074	-	ENSG00000264329	ENST00000577791	NA	NA	STXBP1	NA	chr9:130442966-130454995	inner
CUST_51539_PI429285431	10.026829	P	10.879777	P	0.553652247532217	0	lncRNA	55106-1_{1..1076}	hg19_lincRNAsTranscripts_TCONS_l2_00011049 range=chr17:4703748-4710294 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011049 range=chr17:4703748-4710294 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	  4703748	  4704823	-	NA	NA	NA	NA	PLD2	NA	chr17:4710421-4720294	inter
CUST_13833_PI429285431	2.8726053	P	3.7177725	P	0.556646293294285	0	lncRNA	15476-1_{1..295}	lnc-CA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CA2-1:1	chr8	 86446631	 86446925	+	lnc-CA2-1	lnc-CA2-1:1	XLOC_006865	linc-ATP6V0D2-1	NA	NA	NA	inter
CUST_9589_PI429285431	3.6463368	P	3.849245	P	0.8687974657662	0	lncRNA	11105-1_{1..552}	lnc-METTL4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-METTL4-1:2	chr18	  2510278	  2510829	-	lnc-METTL4-1	lnc-METTL4-1:2	XLOC_012743	linc-YES1-1	NA	NA	NA	inter
CUST_35811_PI429285431	3.020982	A	2.8497057	A	1.12605422352504	0	lncRNA	37217-1_{1..815}	n344487|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_35|NULL|-1.3485000|-0.2430682	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344487|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_35|NULL|-1.3485000|-0.2430682	chrX	 47371723	 47372537	+	NA	NA	NA	NA	NA	"hg19_refFlat_NUS1:range=chr6:117996834-1180281785'pad=0,hg19_refFlat_NUS1:range=chr6:117996834-1180281785'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.30"	NA	inter
LNCA_21_P0001237	1.5275216	A	0.91795385	A	1.52580199055811	0	lncRNA	ENST00000436739	NA	NA	NA	NA	XLOC_001253	NA	ENST00000436739	NA	NA	"BROAD Institute lincRNA (XLOC_001253), lincRNA [TCONS_00000755]"	chr1:230960412-230959597	hs|1q42.2	Agilent_HUMAN_G3V2	ENST00000436739	ENST00000436739	chr1	230959597	230960412	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37307_PI429285431	4.9875913	P	5.065836	P	0.947209397836946	0	lncRNA	38414-1_{1..1456}	n345749|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1298|NULL|-1.2985500|-0.3272533	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n345749|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1298|NULL|-1.2985500|-0.3272533	NA	NA	     1455	NA	NA	NA	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70"	NA	Unknown
CUST_50613_PI429285431	7.2090387	P	7.151651	P	1.04057986726925	0	lncRNA	54298-1_{1..269}	hg19_lincRNAsTranscripts_TCONS_l2_00003862 range=chr10:988075-988583 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003862 range=chr10:988075-988583 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	   988075	   988343	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14681_PI429285431	0.8838479	A	0.8921514	A	0.994260983819365	0	lncRNA	16350-1_{1..697}	lnc-NKIRAS1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NKIRAS1-3:1	chr3	 23244355	 23245051	-	lnc-NKIRAS1-3	lnc-NKIRAS1-3:1	XLOC_003065	linc-ZNF385D-1	UBE2E2	NA	chr3:23244784-23254446	inter
LNCA_21_P0013360	0.88343936	A	0.8953503	A	0.991777952975658	0	lncRNA	TCONS_l2_00027009	NA	NA	NA	NA	XLOC_l2_014076	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014076), lincRNA [TCONS_l2_00027009]"	chr7:156263932-156263873	hs|7q36.3	Agilent_HUMAN_G3V2	TCONS_l2_00027009	TCONS_l2_00027009	chr7	156263873	156263932	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4592_PI429285431	0.886253	A	2.7368696	A	0.277273837361716	0	lncRNA	4541-1_{1..643}	"transcript_id ""ENST00000456848.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456848.1"" | genecode_v17"	chr13	 36271864	 36272506	+	ENSG00000236036.1	ENST00000456848.1	LINC00445	LINC00445-002	NA	NA	NA	inter
CUST_7891_PI429285431	0.8962912	A	0.90513116	A	0.993891340840922	0	lncRNA	9508-2_{3001..4148}	lnc-ANKRD11-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ANKRD11-3:1	chr16	 89587809	 89588956	-	lnc-ANKRD11-3	lnc-ANKRD11-3:1	ENSG00000245196	AC092123.1	SPG7	"hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80chr16:89574809-89598625"	NA	inner
CUST_22430_PI429285431	0.9086974	A	0.91967934	A	0.992416797917812	0	lncRNA	24018-1_{1..1111}	lnc-C2orf83-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf83-1:1	chr2	228551266	228552376	-	lnc-C2orf83-1	lnc-C2orf83-1:1	ENSG00000240115.1	AC064853.4	SLC19A3	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20chr2:228549926-228561622"	NA	inner
LNCA_21_P0014237	0.8792969	A	0.8882111	A	0.993840197257152	0	lncRNA	XR_108981	XR_108981	XR_108981	NA	Hs.655466	LOC100507332	uncharacterized LOC100507332	NA	THC2606759	NA	"PREDICTED: Homo sapiens hypothetical LOC100507332 (LOC100507332), miscRNA [XR_108981]"	chr9:97637494-97637553	hs|9q22.32	Agilent_HUMAN_G3V2	XR_108981	XR_108981	chr9	 97637494	 97637553	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15506_PI429285431	1.1000352	A	0.88059926	A	1.16427829190303	0	lncRNA	17195-1_{1..429}	lnc-FICD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FICD-1:1	chr12	108826022	108826450	+	lnc-FICD-1	lnc-FICD-1:1	XLOC_009873	linc-FICD	NA	NA	NA	inter
CUST_30791_PI429285431	1.5687952	A	1.3814623	A	1.13865674232229	0	lncRNA	32578-1_{1..396}	n336676|Z69020|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327657|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327657|2.2639000|-0.0207918	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336676|Z69020|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327657|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327657|2.2639000|-0.0207918	chr2	 89161035	 89161430	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8206_PI429285431	0.87735116	A	0.8781552	A	0.999442837213805	0	lncRNA	9800-1_{1..524}	lnc-CADM2-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CADM2-6:2	chr3	 82251480	 82252003	+	lnc-CADM2-6	lnc-CADM2-6:2	ENSG00000239440	RP11-260O18.1	NA	NA	NA	inter
LNCA_21_P0013309	3.027576	P	3.1733856	P	0.903872007589781	0	lncRNA	TCONS_l2_00026594	NA	NA	NA	NA	XLOC_l2_013848	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013848), lincRNA [TCONS_l2_00026594]"	chr7:57269466-57269407	hs|7p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00026594	TCONS_l2_00026594	chr7	 57269407	 57269466	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41724_PI429285431	6.3129325	P	6.0113583	P	1.23248851256799	0	lncRNA	43246-1_{1..64}	ENST00000578556 ncrna:miRNA chromosome:GRCh37:7:137808504:137808567:1 gene:ENSG00000266193 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578556 ncrna:miRNA chromosome:GRCh37:7:137808504:137808567:1 gene:ENSG00000266193 gene_biotype:miRNA transcript_biotype:miRNA	chr7	137808504	137808567	+	ENSG00000266193	ENST00000578556	NA	NA	AKR1D1	NA	chr7:137798504-137803050	inter
CUST_44888_PI429285431	0.87939453	A	0.87518084	A	1.00292497676451	0	lncRNA	49410-2_{3001..3318}	"gi|386781724|ref|NR_048542.1| Homo sapiens serine/threonine kinase 31 (STK31), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386781724|ref|NR_048542.1| Homo sapiens serine/threonine kinase 31 (STK31), transcript variant 3, non-coding RNA"	Chr7	 23752786	 23753103	+	56164	NR_048542.1	NA	NA	NA	NA	NA	inter
CUST_6907_PI429285431	4.927186	P	4.994272	P	0.95456411024943	0	lncRNA	6857-1_{1..355}	"transcript_id ""ENST00000435738.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435738.1"" | genecode_v17"	chr21	 47476430	 47476784	+	ENSG00000226115.1	ENST00000435738.1	AP001476.3	AP001476.3-001	NA	NA	NA	inter
CUST_15621_PI429285431	2.3815582	A	2.5749857	A	0.874525586718938	0	lncRNA	17309-1_{1..370}	lnc-NCKAP1L-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCKAP1L-1:5	chr12	 54830620	 54830989	+	lnc-NCKAP1L-1	lnc-NCKAP1L-1:5	XLOC_009769	linc-NCKAP1L-1	NA	NA	NA	inter
LNCA_21_P0010933	0.8740195	A	0.87168574	A	1.00161894824812	0	lncRNA	ENST00000432689	NA	NA	NA	NA	XLOC_l2_001841	NA	ENST00000432689	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001841), lincRNA [TCONS_l2_00004090]"	chr10:5319128-5319069	hs|10p15.1	Agilent_HUMAN_G3V2	ENST00000432689	ENST00000432689	chr10	  5319069	  5319128	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35075_PI429285431	2.1335926	A	2.571435	A	0.738237843535563	0	lncRNA	36485-1_{1..2090}	n342029|AK074371|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4510|NULL|-0.9624600|-0.2940160	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342029|AK074371|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4510|NULL|-0.9624600|-0.2940160	chr12	117147978	117150067	-	NA	NA	NA	NA	C12orf49	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70chr12:117153596-117160681"	NA	inter
LNCA_21_P0014899	0.87470895	A	0.8729394	A	1.00122731112399	0	lncRNA	XR_111214	XR_111214	XR_111214	NA	Hs.651430	LOC100508995	NA	NA	THC2491554	NA	"PREDICTED: Homo sapiens hypothetical LOC100508995 (LOC100508995), miscRNA [XR_111214]"	chr11:93459991-93459932	hs|11q21	Agilent_HUMAN_G3V2	XR_111214	XR_111214	chr11	 93459932	 93459991	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19757_PI429285431	0.88628334	A	0.91756076	A	0.978553463430192	0	lncRNA	21415-1_{1..505}	lnc-MAK16-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-MAK16-4:1	chr8	 32299984	 32300488	+	lnc-MAK16-4	lnc-MAK16-4:1	ENSG00000254049.1	NRG1-IT3	NRG1	NA	chr8:32289984-32310241	inner
CUST_19544_PI429285431	0.8977661	A	0.90353525	A	0.996009114777154	0	lncRNA	21200-1_{1..682}	lnc-C21orf54-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C21orf54-4:1	chr21	 34443210	 34443891	-	lnc-C21orf54-4	lnc-C21orf54-4:1	ENSG00000227757.1	AP000282.2	OLIG1	"hg19_refFlat_OLIG1:range=chr21:34442553-344433685'pad=0,hg19_refFlat_OLIG1:range=chr21:34442553-344433685'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.80chr21:34442450-34444728"	NA	inner
LNCA_21_P0004796	0.87537134	A	0.87445575	A	1.00063484005275	0	lncRNA	ENST00000433486	NA	NA	NA	NA	XLOC_005891	NA	ENST00000433486	NA	NA	"BROAD Institute lincRNA (XLOC_005891), lincRNA [TCONS_00011601]"	chr6:156818972-156818913	hs|6q25.3	Agilent_HUMAN_G3V2	ENST00000433486	ENST00000433486	chr6	156818913	156818972	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010887	0.87535787	A	0.8745815	A	1.00053828349917	0	lncRNA	TCONS_l2_00003634	NA	NA	NA	NA	XLOC_l2_002033	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002033), lincRNA [TCONS_l2_00003634]"	chr10:81425319-81425260	hs|10q22.3	Agilent_HUMAN_G3V2	TCONS_l2_00003634	TCONS_l2_00003634	chr10	 81425260	 81425319	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_229_PI429201921	7.328896	P	7.57186	P	0.845007469873067	0	lncRNA	178-1_{1..3000}	TC0X002112.hg.1	TCONS_l2_00030821-XLOC_l2_015752 // Broad TUCP // linc-CXCR3 chrX:-:70882844-70885603 // chrX // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00030522-XLOC_l2_015752 // Broad TUCP // linc-CXCR3 chrX:-:70882855-70888878 // chrX // 100 // 100 // 0 // --- // 0/// TCONS_l2_00030822-XLOC_l2_015752 // Broad TUCP // linc-CXCR3 chrX:-:70882847-70884121 // chrX // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chrX:-:70882844-70885603	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00030821-XLOC_l2_015752	linc-CXCR3	chrX	 70882844	 70885603	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8712_PI429285431	0.90428233	A	0.9111282	A	0.995266045164407	0	lncRNA	10256-1_{1..3000}	lnc-GTF2B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2B-1:1	chr1	 89150847	 89153846	-	lnc-GTF2B-1	lnc-GTF2B-1:1	ENSG00000237505	RP11-76N22.2	PKN2	NA	chr1:89149922-89160887	inner
LNCA_21_P0001233	0.87245363	A	0.8746379	A	0.998487124958893	0	lncRNA	ENST00000433058	NA	NA	NA	NA	XLOC_001230	NA	ENST00000433058	THC2609725	NA	"BROAD Institute lincRNA (XLOC_001230), lincRNA [TCONS_00000746]"	chr1:225635762-225635703	hs|1q42.12	Agilent_HUMAN_G3V2	ENST00000433058	ENST00000433058	chr1	225635703	225635762	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23908_PI429285431	3.3946388	A	3.2789793	P	1.08347021969199	0	lncRNA	25466-1_{1..3000}	lnc-TNPO3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNPO3-1:1	chr7	128550686	128553685	-	lnc-TNPO3-1	lnc-TNPO3-1:1	ENSG00000135253.8	KCP	KCP	NA	chr7:128540686-128550773	inner
CUST_25561_PI429285431	0.9193187	A	1.4360198	A	0.698968284357219	0	lncRNA	27090-1_{1..2102}	lnc-THSD4-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THSD4-3:4	chr15	 72106353	 72108454	+	lnc-THSD4-3	lnc-THSD4-3:4	ENSG00000031544.9	NR2E3	NR2E3	NA	chr15:72102894-72110600	inner
CUST_45125_PI429285431	4.5678587	P	4.9557595	P	0.764240807927012	0	lncRNA	49605-2_{3001..4082}	"gi|211971087|ref|NR_024394.1| Homo sapiens uncharacterized LOC154822 (LOC154822), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|211971087|ref|NR_024394.1| Homo sapiens uncharacterized LOC154822 (LOC154822), non-coding RNA"	Chr7	158804045	158805126	+	154822	NR_024394.1	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80"	NA	inter
CUST_51078_PI429285431	0.92856777	A	1.0578719	A	0.91427233431087	0	lncRNA	54716-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00007200 range=chr13:52741674-52768686 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007200 range=chr13:52741674-52768686 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 52741674	 52744673	-	NA	NA	NA	NA	NEK3	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10chr13:52731674-52733996"	NA	inter
CUST_41937_PI429285431	2.293969	A	1.0446718	A	2.37725588233177	0	lncRNA	43691-1_{1..75}	ENST00000408428 ncrna:miRNA chromosome:GRCh37:17:16185328:16185402:1 gene:ENSG00000221355 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408428 ncrna:miRNA chromosome:GRCh37:17:16185328:16185402:1 gene:ENSG00000221355 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 16185328	 16185402	+	ENSG00000221355	ENST00000408428	NA	NA	PIGL	NA	chr17:16175328-16195402	inner
CUST_29291_PI429285431	4.056483	P	3.8119876	P	1.18467834292389	0	lncRNA	31042-1_{1..306}	n332417|AB426827|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000487349|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000487349|0.1401830|-0.1607438	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332417|AB426827|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000487349|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000487349|0.1401830|-0.1607438	chr10	 88277725	 88278030	-	NA	NA	NA	NA	WAPAL	NA	chr10:88267725-88281541	inner
CUST_43243_PI429285431	3.1594455	A	3.2203066	P	0.958691735110162	0	lncRNA	48060-1_{1..921}	ENST00000590697 havana:sense_intronic chromosome:GRCh37:19:19899564:19901340:-1 gene:ENSG00000267481 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000590697 havana:sense_intronic chromosome:GRCh37:19:19899564:19901340:-1 gene:ENSG00000267481 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 19899564	 19900484	-	ENSG00000267481	ENST00000590697	NA	NA	ZNF506	NA	chr19:19903520-19911340	inter
CUST_8158_PI429285431	0.89087194	A	2.3981812	A	0.351766680094411	0	lncRNA	9761-1_{1..1730}	lnc-TBCC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBCC-1:1	chr6	 42757883	 42759612	-	lnc-TBCC-1	lnc-TBCC-1:1	ENSG00000249151	ENST00000504814	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
CUST_47141_PI429285431	7.808065	P	8.9250555	P	0.461054594943899	0	lncRNA	51222-1_{1..1995}	"gi|300795626|ref|NR_034098.1| Homo sapiens echinoderm microtubule associated protein like 2 (EML2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300795626|ref|NR_034098.1| Homo sapiens echinoderm microtubule associated protein like 2 (EML2), transcript variant 4, non-coding RNA"	Chr19	 46112658	 46114652	-	24139	NR_034098.1	NA	NA	NA	NA	NA	inter
CUST_26541_PI429285431	4.961544	P	5.613389	P	0.636465844463147	0	lncRNA	28047-1_{1..579}	lnc-INPP4B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-INPP4B-2:1	chr4	144105661	144106239	-	lnc-INPP4B-2	lnc-INPP4B-2:1	ENSG00000250326.1	RP11-284M14.1	USP38	NA	chr4:144106070-144116014	inter
CUST_25088_PI429285431	2.613017	A	2.2995386	A	1.24270029488856	0	lncRNA	26625-1_{1..478}	lnc-ADCY7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADCY7-1:1	chr16	 50405070	 50405547	+	lnc-ADCY7-1	lnc-ADCY7-1:1	ENSG00000261393.1	RP11-21B23.1	BRD7	NA	chr16:50395070-50402845	inter
CUST_43861_PI429285431	4.291918	P	3.762508	P	1.44333881153553	0	lncRNA	48582-1_{1..1366}	"gi|323462145|ref|NR_037862.1| Homo sapiens small nuclear ribonucleoprotein 27kDa (U4/U6.U5) (SNRNP27), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|323462145|ref|NR_037862.1| Homo sapiens small nuclear ribonucleoprotein 27kDa (U4/U6.U5) (SNRNP27), transcript variant 2, non-coding RNA"	Chr2	 70121075	 70122440	+	11017	NR_037862.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004813	5.13819	P	5.2105436	P	0.951085139797219	0	lncRNA	TCONS_00011632	NA	NA	NA	NA	XLOC_005121	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005121), lincRNA [TCONS_00011632]"	chr6:693989-694048	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_00011632	TCONS_00011632	chr6	   693989	   694048	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009284	0.89347404	A	0.9102288	A	0.988453661902901	0	lncRNA	TCONS_00025513	NA	NA	NA	NA	XLOC_012324	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012324), lincRNA [TCONS_00025513]"	chr17:76358828-76358887	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_00025513	TCONS_00025513	chr17	 76358828	 76358887	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30704_PI429285431	6.5763555	P	6.643861	P	0.954286586989436	0	lncRNA	32486-1_{1..425}	n336212|X94052|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324814|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324814|1.5046800|-0.0652476	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336212|X94052|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324814|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324814|1.5046800|-0.0652476	chr14	107034727	107035151	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48024_PI429285431	4.919281	P	4.976174	P	0.961332224629979	0	lncRNA	51906-2_{3001..5254}	"gi|410173643|ref|XR_172313.1| PREDICTED: Homo sapiens uncharacterized LOC100996873 (LOC100996873), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410173643|ref|XR_172313.1| PREDICTED: Homo sapiens uncharacterized LOC100996873 (LOC100996873), misc_RNA"	NA	NA	NA	NA	NA	XR_172313.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90"	NA	Unknown
LNCA_21_P0011675	11.170533	P	10.343218	P	1.7743799885556	0	lncRNA	TCONS_l2_00012321	NA	NA	NA	NA	XLOC_l2_006609	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006609), lincRNA [TCONS_l2_00012321]"	chr19:12671224-12671283	hs|19p13.2	Agilent_HUMAN_G3V2	TCONS_l2_00012321	TCONS_l2_00012321	chr19	 12671224	 12671283	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32731_PI429285431	6.538003	P	6.611175	P	0.950545769157533	0	lncRNA	34371-1_{1..2638}	n339359|BC033528|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1791|NULL|-0.1464090|-0.1870223	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339359|BC033528|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1791|NULL|-0.1464090|-0.1870223	chr3	 50297734	 50300371	+	NA	NA	NA	NA	GNAI2	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-50.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0,hg19_refFlat_ZNF678:range=chr1:227751396-2278435295'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00chr3:50287734-50296786"	NA	inter
LNCA_21_P0007067	8.554218	P	8.515776	P	1.02700414186717	0	lncRNA	TCONS_00018764	NA	NA	NA	NA	XLOC_008524	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008524), lincRNA [TCONS_00018764]"	chr10:79973772-79973831	hs|10q22.3	Agilent_HUMAN_G3V2	TCONS_00018764	TCONS_00018764	chr10	 79973772	 79973831	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25687_PI429285431	9.252725	P	8.998537	P	1.19266428027872	0	lncRNA	27216-1_{1..398}	lnc-LRRC14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC14-1:1	chr8	145811643	145812040	+	lnc-LRRC14-1	lnc-LRRC14-1:1	ENSG00000255456.1	CTD-2517M22.9	ARHGAP39	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80chr8:145801643-145821872"	NA	inner
CUST_51442_PI429285431	3.5186284	P	2.2919223	A	2.34032047376049	0	lncRNA	55019-1_{1..469}	hg19_lincRNAsTranscripts_TCONS_l2_00010087 range=chr16:30291059-30293029 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010087 range=chr16:30291059-30293029 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 30291059	 30291527	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34222_PI429285431	0.87864035	A	0.92918587	A	0.965571152668277	0	lncRNA	35734-2_{3001..6000}	n341083|AF525782|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3549|NULL|-0.8545410|-0.3661285	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341083|AF525782|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3549|NULL|-0.8545410|-0.3661285	chr11	 84597423	 84600422	+	NA	NA	NA	NA	DLG2	NA	chr11:84584423-84614599	inner
CUST_39366_PI429285431	0.8796095	A	0.8829444	A	0.997691093103165	0	lncRNA	40330-1_{1..1549}	n386475|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lxr.1||-1.2500800|-0.3010157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n386475|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lxr.1||-1.2500800|-0.3010157	chr8	 47752507	 47754055	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1183_PI429285431	0.87681043	A	0.8800734	A	0.99774083730227	0	lncRNA	1173-1_{1..511}	"transcript_id ""ENST00000428474.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428474.1"" | genecode_v17"	chr2	181988623	181989133	+	ENSG00000234663.1	ENST00000428474.1	AC104820.2	AC104820.2-004	NA	NA	NA	inter
CUST_47286_PI429285431	12.312745	P	12.230469	P	1.05868691143691	0	lncRNA	51355-1_{1..2068}	"gi|386642897|ref|NR_047694.1| Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class T (PIGT), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386642897|ref|NR_047694.1| Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class T (PIGT), transcript variant 8, non-coding RNA"	Chr20	 44044707	 44046774	+	51604	NR_047694.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001959	8.649178	P	7.778086	P	1.82904681275593	0	lncRNA	ENST00000430494	NA	NA	NA	NA	XLOC_001826	NA	ENST00000430494	THC2778533	NA	"BROAD Institute lincRNA (XLOC_001826), lincRNA [TCONS_00003088]"	chr2:208110544-208110603	hs|2q33.3	Agilent_HUMAN_G3V2	ENST00000430494	ENST00000430494	chr2	208110544	208110603	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1855_PI429285431	1.7873704	A	0.8776847	A	1.87863618138117	0	lncRNA	1845-1_{1..783}	"transcript_id ""ENST00000437514.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437514.1"" | genecode_v17"	chr4	118349559	118350341	+	ENSG00000236922.4	ENST00000437514.1	AC092661.1	AC092661.1-001	NA	NA	NA	inter
CUST_43399_PI429285431	4.1214843	P	3.7999642	P	1.24964654934804	0	lncRNA	48212-1_{1..1084}	"gi|333944044|ref|NR_038280.1| Homo sapiens uncharacterized LOC100506963 (LOC100506963), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|333944044|ref|NR_038280.1| Homo sapiens uncharacterized LOC100506963 (LOC100506963), non-coding RNA"	Chr1	 24086872	 24087955	-	100506963	NR_038280.1	NA	NA	NA	NA	NA	inter
CUST_48663_PI429285431	2.3977976	A	1.6120688	A	1.72396298639878	0	lncRNA	52507-1_{1..2039}	hg19_lincRNAsTranscripts_TCONS_l2_00014703 range=chr2:96472806-96481369 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014703 range=chr2:96472806-96481369 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 96472806	 96474844	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27690_PI429285431	0.9083847	A	0.9073186	A	1.00073923731051	0	lncRNA	29268-1_{1..516}	n324897|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158208|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158208|-1.2547700|-0.3438048	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324897|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000158208|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000158208|-1.2547700|-0.3438048	chr21	 17953464	 17953979	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2564_PI429285431	1.8423676	A	1.3782922	A	1.37943301366102	0	lncRNA	2552-1_{1..481}	"transcript_id ""ENST00000438797.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438797.1"" | genecode_v17"	chr6	 80513300	 80513780	-	ENSG00000235357.1	ENST00000438797.1	RP1-159G19.1	RP1-159G19.1-001	NA	NA	NA	inner
CUST_8220_PI429285431	2.870547	A	3.6573246	P	0.579637323597712	0	lncRNA	9810-1_{1..1460}	lnc-RP11-712L6.5.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-712L6.5.1-2:2	chr11	126225337	126226796	-	lnc-RP11-712L6.5.1-2	lnc-RP11-712L6.5.1-2:2	ENSG00000247445	AP001318.3	ST3GAL4	NA	chr11:126226096-126235431	inter
CUST_4381_PI429285431	2.099959	A	2.4892895	A	0.76348382614338	0	lncRNA	4332-1_{1..898}	"transcript_id ""ENST00000552353.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552353.2"" | genecode_v17"	chr12	 93392994	 93393891	+	ENSG00000257345.2	ENST00000552353.2	RP11-511B23.1	RP11-511B23.1-001	NA	NA	NA	inter
CUST_20846_PI429285431	0.8849163	A	0.8794604	A	1.00378890151024	0	lncRNA	22477-1_{1..485}	lnc-ACAD10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACAD10-1:1	chr12	112037632	112038116	+	lnc-ACAD10-1	lnc-ACAD10-1:1	ENSG00000258099.1	RP11-686G8.2	ATXN2	NA	chr12:112027632-112037480	inter
CUST_34893_PI429285431	8.962334	P	9.080814	P	0.921157656249148	0	lncRNA	36318-1_{1..2014}	n341808|AK055078|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4286|NULL|-0.9370610|-0.1782717	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341808|AK055078|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4286|NULL|-0.9370610|-0.1782717	chr9	138898384	138900397	-	NA	NA	NA	NA	NACC2	NA	chr9:138898383-138910389	inner
CUST_29290_PI429285431	4.152157	P	3.5530186	P	1.51481162716422	0	lncRNA	31041-1_{1..267}	n332416|AB426828|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000487350|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000487350|0.1133430|-0.1847616	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332416|AB426828|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000487350|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000487350|0.1133430|-0.1847616	chr10	 88277725	 88277991	-	NA	NA	NA	NA	WAPAL	NA	chr10:88267725-88281541	inner
CUST_47237_PI429285431	5.202942	P	5.4536343	P	0.840492994630113	0	lncRNA	51312-1_{1..1681}	"gi|224465248|ref|NR_027089.1| Homo sapiens uncharacterized LOC284788 (LOC284788), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|224465248|ref|NR_027089.1| Homo sapiens uncharacterized LOC284788 (LOC284788), transcript variant 1, non-coding RNA"	Chr20	 22380989	 22382669	-	284788	NR_027089.1	NA	NA	NA	NA	NA	inter
CUST_27487_PI429285431	0.874998	A	0.87488043	A	1.00008149663469	0	lncRNA	29057-1_{1..544}	n324663|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319657|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319657|-1.2980800|-0.2835687	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324663|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319657|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319657|-1.2980800|-0.2835687	chr22	 41002304	 41002847	+	NA	NA	NA	NA	MKL1	NA	chr22:40992304-41013001	inner
LNCA_21_P0010995	3.8866568	P	4.273867	P	0.764606727978794	0	lncRNA	TCONS_l2_00004725	NA	NA	NA	NA	XLOC_l2_002441	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002441), lincRNA [TCONS_l2_00004725]"	chr11:94384124-94384686	hs|11q21	Agilent_HUMAN_G3V2	TCONS_l2_00004725	TCONS_l2_00004725	chr11	 94384124	 94384686	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25458_PI429285431	4.367196	P	4.1924505	P	1.1287652663245	0	lncRNA	26988-1_{1..566}	lnc-SDR42E1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SDR42E1-1:2	chr16	 82096698	 82097263	-	lnc-SDR42E1-1	lnc-SDR42E1-1:2	ENSG00000261235.1	RP11-510J16.5	HSD17B2	NA	chr16:82086698-82106827	inner
CUST_38286_PI429285431	3.2611334	P	3.4396515	P	0.883610152394582	0	lncRNA	39340-1_{1..2116}	n381912|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001teb.2||-1.2973600|-0.3713667	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n381912|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001teb.2||-1.2973600|-0.3713667	chr12	 95702290	 95704405	+	NA	NA	NA	NA	VEZT	NA	chr12:95692290-95696566	inter
CUST_31367_PI429285431	1.1216209	A	2.492889	A	0.386551328152852	0	lncRNA	33146-1_{1..1238}	n337833|BC038556|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|216|NULL|-0.8919110|-0.3445049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337833|BC038556|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|216|NULL|-0.8919110|-0.3445049	chr15	 63188010	 63189247	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010316	1.286663	A	1.130928	A	1.11398901006479	0	lncRNA	TCONS_00029251	NA	NA	NA	NA	XLOC_013981	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013981), lincRNA [TCONS_00029251]"	chr21:46720339-46720398	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029251	TCONS_00029251	chr21	 46720339	 46720398	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013886	1.179132	A	0.9273678	A	1.19066222673822	0	lncRNA	TCONS_l2_00030914	NA	NA	NA	NA	XLOC_l2_015908	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015908), lincRNA [TCONS_l2_00030914]"	chrY:26317807-26318254	hs|Yq11.23	Agilent_HUMAN_G3V2	TCONS_l2_00030914	TCONS_l2_00030914	chrY	 26317807	 26318254	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010652	0.90797377	A	0.9291018	A	0.985461879590889	0	lncRNA	TCONS_l2_00001506	NA	NA	NA	NA	XLOC_l2_001097	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001097), lincRNA [TCONS_l2_00001506]"	chr1:146853630-146853571	hs|1q21.1	Agilent_HUMAN_G3V2	TCONS_l2_00001506	TCONS_l2_00001506	chr1	146853571	146853630	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12522_PI429285431	0.9076662	A	0.915558	A	0.994544755265866	0	lncRNA	14133-1_{1..228}	lnc-COPS4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COPS4-1:2	chr4	 84010198	 84010425	+	lnc-COPS4-1	lnc-COPS4-1:2	XLOC_003595	linc-MRPS18C	PLAC8	NA	chr4:84011201-84020394	inter
LNCA_21_P0011243	0.91041505	A	1.5598613	A	0.637524968072409	0	lncRNA	TCONS_l2_00007728	NA	NA	NA	NA	XLOC_l2_004192	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004192), lincRNA [TCONS_l2_00007728]"	chr14:53636481-53636540	hs|14q22.1	Agilent_HUMAN_G3V2	TCONS_l2_00007728	TCONS_l2_00007728	chr14	 53636481	 53636540	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004916	1.8096453	A	2.3818471	A	0.672589517808857	0	lncRNA	TCONS_00011910	NA	NA	NA	NA	XLOC_005411	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005411), lincRNA [TCONS_00011910]"	chr6:106616940-106629165	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00011910	TCONS_00011910	chr6	106616940	106629165	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005306	0.9110925	A	0.942451	A	0.978498469905498	0	lncRNA	ENST00000440351	NA	NA	NA	NA	XLOC_006440	NA	ENST00000440351	NA	NA	"BROAD Institute lincRNA (XLOC_006440), lincRNA [TCONS_00013169]"	chr7:50314445-50314386	hs|7p12.2	Agilent_HUMAN_G3V2	ENST00000440351	ENST00000440351	chr7	 50314386	 50314445	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29089_PI429285431	0.8993295	A	0.9059918	A	0.995392691896222	0	lncRNA	30820-1_{1..359}	n326583|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025349|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025349|0.2226580|-0.2566898	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326583|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025349|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025349|0.2226580|-0.2566898	chr1	 63262465	 63262823	+	NA	NA	NA	NA	ATG4C	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-29.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-59.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00chr1:63252465-63273917"	NA	inner
CUST_9491_PI429285431	0.92355305	A	0.9196384	A	1.00271711328974	0	lncRNA	10998-1_{1..387}	lnc-CCDC125-6:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC125-6:9	chr5	 67814697	 67815083	-	lnc-CCDC125-6	lnc-CCDC125-6:9	XLOC_004859	linc-CD180-7	NA	NA	NA	inter
CUST_12634_PI429285431	3.0192254	A	3.3515148	A	0.794275055084943	0	lncRNA	14250-1_{1..477}	lnc-RTKN2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RTKN2-3:2	chr10	 63580905	 63581381	-	lnc-RTKN2-3	lnc-RTKN2-3:2	XLOC_008833	linc-TMEM26-1	NA	NA	NA	inter
CUST_35019_PI429285431	0.90854883	A	0.9160259	A	0.994830697080416	0	lncRNA	36433-1_{1..2029}	n341956|CR593338|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4437|NULL|-1.0022600|-0.3330113	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341956|CR593338|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4437|NULL|-1.0022600|-0.3330113	chr12	 67364374	 67366402	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27363_PI429285431	0.9144795	A	0.93072844	A	0.98880028213496	0	lncRNA	28926-1_{1..917}	n324525|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040485|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040485|-0.9144290|-0.2119904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324525|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040485|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040485|-0.9144290|-0.2119904	chr6	 40410670	 40411586	+	NA	NA	NA	NA	LRFN2	NA	chr6:40400670-40465602	inner
CUST_1605_PI429285431	4.039173	P	4.149472	P	0.926396045479966	0	lncRNA	1591-1_{1..1008}	"transcript_id ""ENST00000444379.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444379.1"" | genecode_v17"	chr3	187719488	187720495	-	ENSG00000236412.1	ENST00000444379.1	RP11-132N15.2	RP11-132N15.2-001	NA	NA	NA	inter
LNCA_19_P00805076	5.738678	P	6.1138706	P	0.771002476889167	0	lncRNA	TCONS_00020437	NA	NA	NA	NA	XLOC_009765	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009765), lincRNA [TCONS_00020437]"	chr12:54544373-54544432	hs|12q13.13	Agilent_HUMAN_G3V2	TCONS_00020437	TCONS_00020437	chr12	 54544373	 54544432	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013067	0.8986522	A	0.9171095	A	0.987287865080416	0	lncRNA	TCONS_l2_00024656	NA	NA	NA	NA	XLOC_l2_012919	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012919), lincRNA [TCONS_l2_00024656]"	chr6:26331991-26321469	hs|6p22.2	Agilent_HUMAN_G3V2	TCONS_l2_00024656	TCONS_l2_00024656	chr6	 26321469	 26331991	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9188_PI429285431	0.9018084	A	0.90743005	A	0.996110951167085	0	lncRNA	10701-1_{1..540}	lnc-TRIO-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIO-4:2	chr5	 12804316	 12804855	+	lnc-TRIO-4	lnc-TRIO-4:2	ENSG00000248131	RP11-308B16.1	NA	NA	NA	inter
CUST_16021_PI429285431	3.0533915	A	4.0873513	P	0.48836787242624	0	lncRNA	17717-1_{1..294}	lnc-COL6A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL6A1-1:2	chr21	 47393595	 47393888	+	lnc-COL6A1-1	lnc-COL6A1-1:2	XLOC_013986	linc-COL6A1	COL6A1	NA	chr21:47401663-47403660	inter
CUST_43369_PI429285431	3.1821446	A	4.767488	P	0.333245338529603	0	lncRNA	48185-1_{1..2724}	"gi|307691195|ref|NR_036637.1| Homo sapiens family with sequence similarity 213, member B (FAM213B), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|307691195|ref|NR_036637.1| Homo sapiens family with sequence similarity 213, member B (FAM213B), transcript variant 7, non-coding RNA"	Chr1	  2517899	  2520622	+	127281	NR_036637.1	NA	NA	NA	"hg19_refFlat_MMEL1:range=chr1:2522429-25609235'pad=0,hg19_refFlat_MMEL1:range=chr1:2522429-25609235'pad=0 3'pad=0 strand=- repeatMasking=none,-94.10"	NA	inter
CUST_14843_PI429285431	3.6679657	P	4.2356944	P	0.674678129023441	0	lncRNA	16505-1_{1..471}	lnc-FAM160A1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM160A1-7:1	chr4	153073187	153073657	+	lnc-FAM160A1-7	lnc-FAM160A1-7:1	XLOC_003739	linc-ARFIP1-3	NA	NA	NA	inter
CUST_49386_PI429285431	1.3453124	A	1.5619721	A	0.860555592793021	0	lncRNA	53200-1_{1..619}	hg19_lincRNAsTranscripts_TCONS_l2_00022523 range=chr5:133758501-133763748 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022523 range=chr5:133758501-133763748 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	133758501	133759119	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31139_PI429285431	11.878669	P	12.172371	P	0.815805987075266	0	lncRNA	32934-1_{1..203}	n337466|EF036491|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394744|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394744|1.1111700|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337466|EF036491|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394744|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394744|1.1111700|-1.0000000	chr19	  6361569	  6361771	+	NA	NA	NA	NA	CLPP	NA	chr19:6361463-6368915	inner
LNCA_21_P0009485	0.87898093	A	0.88746214	A	0.994138519103953	0	lncRNA	TCONS_00026339	NA	NA	NA	NA	XLOC_012688	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012688), lincRNA [TCONS_00026339]"	chr18:54708694-54708753	hs|18q21.31	Agilent_HUMAN_G3V2	TCONS_00026339	TCONS_00026339	chr18	 54708694	 54708753	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50419_PI429285431	5.757422	P	5.8645415	P	0.928439945430739	0	lncRNA	54123-1_{1..401}	hg19_lincRNAsTranscripts_TCONS_l2_00030158 range=chrX:18884025-18884823 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030158 range=chrX:18884025-18884823 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 18884025	 18884425	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10169_PI429285431	2.5405285	A	2.3088813	A	1.17417480066634	0	lncRNA	11694-1_{1..681}	lnc-C14orf144-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf144-1:1	chr14	104709434	104710114	+	lnc-C14orf144-1	lnc-C14orf144-1:1	XLOC_010948	linc-C14orf180-1	NA	NA	NA	inter
CUST_17245_PI429285431	6.493865	P	6.06706	P	1.34425328762447	0	lncRNA	18963-1_{1..1416}	lnc-UQCRFS1-9:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UQCRFS1-9:6	chr19	 28284440	 28285855	-	lnc-UQCRFS1-9	lnc-UQCRFS1-9:6	XLOC_013282	linc-ZNF681-4	NA	NA	NA	inter
CUST_47608_PI429285431	1.8976343	A	2.1898441	A	0.816650223338292	0	lncRNA	51607-5_{12001..15000}	"gi|383087740|ref|NR_001564.2| Homo sapiens X (inactive)-specific transcript (non-protein coding) (XIST), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|383087740|ref|NR_001564.2| Homo sapiens X (inactive)-specific transcript (non-protein coding) (XIST), non-coding RNA"	ChrX	 73052486	 73055485	-	7503	NR_001564.2	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_11548_PI429285431	0.9057864	A	1.9130245	A	0.497497747930024	0	lncRNA	13121-1_{1..2704}	lnc-FMN1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FMN1-2:1	chr15	 33539670	 33542373	-	lnc-FMN1-2	lnc-FMN1-2:1	XLOC_011417	linc-FMN1-4	LOC100652857	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10chr15:33533735-33538807"	NA	inter
CUST_43284_PI429285431	4.4485745	P	4.6302075	P	0.88170442177407	0	lncRNA	48102-1_{1..359}	ENST00000602843 havana:sense_intronic chromosome:GRCh37:1:28146494:28146852:1 gene:ENSG00000270031 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602843 havana:sense_intronic chromosome:GRCh37:1:28146494:28146852:1 gene:ENSG00000270031 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr1	 28146494	 28146852	+	ENSG00000270031	ENST00000602843	NA	NA	STX12	NA	chr1:28136494-28150963	inner
CUST_34290_PI429285431	3.2617636	A	3.305488	P	0.970147221187017	0	lncRNA	35787-1_{1..486}	n341148|AJ227874|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3614|NULL|-1.2297800|-0.5160391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341148|AJ227874|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3614|NULL|-1.2297800|-0.5160391	chr11	126219412	126219897	+	NA	NA	NA	NA	ST3GAL4	NA	chr11:126226096-126229895	inter
LNCA_21_P0008965	4.5808415	P	4.876233	P	0.814851178578516	0	lncRNA	THC2697393	NA	NA	NA	NA	XLOC_011774	NA	NA	THC2697393	NA	"BROAD Institute lincRNA (XLOC_011774), lincRNA [TCONS_00024449]"	chr16:071360885-071360944	hs|16q22.2	Agilent_HUMAN_G3V2	THC2697393	THC2697393	chr16	 71360885	 71360944	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007527	1.8985517	A	2.18765	A	0.818413415973429	0	lncRNA	TCONS_00020347	NA	NA	NA	NA	XLOC_009677	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009677), lincRNA [TCONS_00020347]"	chr12:16573671-16573730	hs|12p12.3	Agilent_HUMAN_G3V2	TCONS_00020347	TCONS_00020347	chr12	 16573671	 16573730	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39548_PI429285431	1.7751498	A	1.7107842	A	1.04562504329525	0	lncRNA	40493-1_{1..692}	n387474|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ewp.1||-1.1379200|-0.3778710	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387474|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ewp.1||-1.1379200|-0.3778710	chr6	  1485930	  1486621	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48962_PI429285431	0.8756815	A	0.8740346	A	1.00114219590112	0	lncRNA	52801-1_{1..692}	hg19_lincRNAsTranscripts_TCONS_l2_00019666 range=chr3:193296834-193310880 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019666 range=chr3:193296834-193310880 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	193296834	193297525	-	NA	NA	NA	NA	OPA1	NA	chr3:193296604-193320880	inter
CUST_5141_PI429285431	0.8917037	A	0.8919351	A	0.99983961860489	0	lncRNA	5081-1_{1..701}	"transcript_id ""ENST00000561394.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561394.1"" | genecode_v17"	chr15	 36262559	 36263259	-	ENSG00000259639.1	ENST00000561394.1	RP11-184D12.1	RP11-184D12.1-002	NA	NA	NA	inter
CUST_5606_PI429285431	1.9335394	A	1.8524024	A	1.05785141365023	0	lncRNA	5535-1_{1..3000}	"transcript_id ""ENST00000564508.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564508.1"" | genecode_v17"	chr16	 72459847	 72462846	+	ENSG00000260664.1	ENST00000564508.1	AC004158.3	AC004158.3-001	NA	NA	NA	inter
CUST_42932_PI429285431	0.8971636	A	0.8858444	A	1.00787673107028	0	lncRNA	46046-1_{1..82}	ENST00000364983 ncrna:snoRNA chromosome:GRCh37:2:125886409:125886490:1 gene:ENSG00000201853 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364983 ncrna:snoRNA chromosome:GRCh37:2:125886409:125886490:1 gene:ENSG00000201853 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	125886409	125886490	+	ENSG00000201853	ENST00000364983	NA	NA	NA	NA	NA	inter
CUST_49689_PI429285431	2.4920442	A	3.3468742	P	0.552930477395787	0	lncRNA	53466-1_{1..585}	hg19_lincRNAsTranscripts_TCONS_l2_00025622 range=chr7:5870865-5894063 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025622 range=chr7:5870865-5894063 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  5870865	  5871449	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013875	4.9022293	P	4.786311	P	1.0836645970459	0	lncRNA	TCONS_l2_00030890	NA	NA	NA	NA	XLOC_l2_015878	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015878), lincRNA [TCONS_l2_00030890]"	chrY:9386807-9386866	hs|Yp11.2	Agilent_HUMAN_G3V2	TCONS_l2_00030890	TCONS_l2_00030890	chrY	  9386807	  9386866	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47320_PI429285431	5.965291	P	4.551722	P	2.66395368462822	0	lncRNA	51378-3_{6001..7764}	"gi|307574675|ref|NR_036633.1| Homo sapiens VAMP (vesicle-associated membrane protein)-associated protein B and C (VAPB), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|307574675|ref|NR_036633.1| Homo sapiens VAMP (vesicle-associated membrane protein)-associated protein B and C (VAPB), transcript variant 3, non-coding RNA"	Chr20	 56970175	 56971938	+	9217	NR_036633.1	NA	NA	NA	NA	NA	inter
CUST_11626_PI429285431	0.87572443	A	0.87548006	A	1.00016939872286	0	lncRNA	13204-1_{1..1007}	lnc-LRP8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRP8-1:1	chr1	 53812571	 53813577	-	lnc-LRP8-1	lnc-LRP8-1:1	XLOC_000835	linc-LRP8-3	NA	NA	NA	inter
LNCA_21_P0009312	0.8746566	A	3.7098439	P	0.140127566305742	0	lncRNA	TCONS_00025610	NA	NA	NA	NA	XLOC_012442	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012442), lincRNA [TCONS_00025610]"	chr17:32546196-32546137	hs|17q12	Agilent_HUMAN_G3V2	TCONS_00025610	TCONS_00025610	chr17	 32546137	 32546196	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13565_PI429285431	2.1980324	A	3.1088634	P	0.531878638057602	0	lncRNA	15206-1_{1..716}	lnc-TOP1MT-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TOP1MT-2:2	chr8	144363652	144364367	-	lnc-TOP1MT-2	lnc-TOP1MT-2:2	XLOC_007249	linc-LY6H	ZNF696	NA	chr8:144373559-144373898	inter
LNCA_21_P0001547	2.1283457	A	0.9245984	A	2.30337179469182	0	lncRNA	TCONS_00001583	NA	NA	NA	NA	XLOC_000916	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000916), lincRNA [TCONS_00001583]"	chr1:91954645-91954586	hs|1p22.2	Agilent_HUMAN_G3V2	TCONS_00001583	TCONS_00001583	chr1	 91954586	 91954645	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011635	0.9089925	A	0.9302836	A	0.985350497640822	0	lncRNA	ENST00000414432	NA	BC075826	NA	NA	XLOC_l2_006010	NA	ENST00000414432	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006010), lincRNA [TCONS_l2_00011627]"	chr17:18417922-18417863	hs|17p11.2	Agilent_HUMAN_G3V2	ENST00000414432	ENST00000414432	chr17	 18417863	 18417922	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32414_PI429285431	0.9087466	A	0.9095012	A	0.99947708790376	0	lncRNA	34090-1_{1..1270}	n339008|AK024585|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1437|NULL|-1.0127700|-0.1781163	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339008|AK024585|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1437|NULL|-1.0127700|-0.1781163	chr14	 74222970	 74224239	+	NA	NA	NA	NA	C14orf43	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-59.90;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30chr14:74212970-74233999"	NA	inner
CUST_20584_PI429285431	3.113322	P	2.8519027	A	1.19865734442975	0	lncRNA	22225-1_{1..423}	lnc-FAM78A-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM78A-3:2	chr9	134042465	134042887	-	lnc-FAM78A-3	lnc-FAM78A-3:2	ENSG00000236986.1	RP11-544A12.4	NUP214	"hg19_refFlat_NUP214:range=chr9:134001092-1341088745'pad=0,hg19_refFlat_NUP214:range=chr9:134001092-1341088745'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00chr9:134032465-134052622"	NA	inner
LNCA_21_P0008966	2.228907	A	0.9370798	A	2.44837951054229	0	lncRNA	TCONS_00024450	NA	NA	NA	NA	XLOC_011774	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011774), lincRNA [TCONS_00024450]"	chr16:71360104-71362502	hs|16q22.2	Agilent_HUMAN_G3V2	TCONS_00024450	TCONS_00024450	chr16	 71360104	 71362502	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34443_PI429285431	1.0541834	A	1.1435524	A	0.939933763672062	0	lncRNA	35921-1_{1..1729}	n341319|BC046223|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3788|NULL|-0.9321770|-0.2016420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341319|BC046223|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3788|NULL|-0.9321770|-0.2016420	chr7	130635253	130636981	-	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50"	NA	inter
CUST_991_PI429285431	0.9251088	A	0.99879366	A	0.950207922107322	0	lncRNA	980-1_{1..2128}	"transcript_id ""ENST00000429464.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429464.1"" | genecode_v17"	chr2	105050820	105052947	+	ENSG00000235597.1	ENST00000429464.1	AC013402.2	AC013402.2-004	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10"	NA	inter
LNCA_21_P0003708	0.9065043	A	0.9277388	A	0.985389155798371	0	lncRNA	TCONS_00008392	NA	NA	NA	NA	XLOC_003842	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003842), lincRNA [TCONS_00008392]"	chr4:190599169-190599889	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008392	TCONS_00008392	chr4	190599169	190599889	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43229_PI429285431	4.5873637	P	5.262014	P	0.626484056615559	0	lncRNA	48044-1_{1..569}	ENST00000602844 havana:sense_intronic chromosome:GRCh37:16:67772491:67773825:-1 gene:ENSG00000270165 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602844 havana:sense_intronic chromosome:GRCh37:16:67772491:67773825:-1 gene:ENSG00000270165 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr16	 67772491	 67773059	-	ENSG00000270165	ENST00000602844	NA	NA	RANBP10	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.21;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80chr16:67762491-67783825"	NA	inner
CUST_21220_PI429285431	2.2224712	A	1.0434653	A	2.26420706383199	0	lncRNA	22845-1_{1..746}	lnc-TCTN3-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCTN3-1:10	chr10	 97667535	 97668280	-	lnc-TCTN3-1	lnc-TCTN3-1:10	ENSG00000226688.1	RP11-429G19.2	C10orf131	NA	chr10:97667722-97677639	inter
CUST_9895_PI429285431	1.248886	A	1.0675051	A	1.13396876342143	0	lncRNA	11419-1_{1..219}	lnc-UGT2A3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UGT2A3-1:1	chr4	 69915661	 69915879	-	lnc-UGT2A3-1	lnc-UGT2A3-1:1	XLOC_003974	linc-UGT2B10	NA	NA	NA	inter
LNCA_21_P0014091	0.89703876	A	0.9148963	A	0.987698387645582	0	lncRNA	XR_108407	XR_108407	XR_108407	NA	Hs.679622	LOC100506905	uncharacterized LOC100506905	NA	THC2638449	NA	"PREDICTED: Homo sapiens hypothetical LOC100506905 (LOC100506905), miscRNA [XR_108407]"	chr2:180415781-180415840	hs|2q31.2	Agilent_HUMAN_G3V2	XR_108407	XR_108407	chr2	180415781	180415840	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011409	1.4862462	A	0.91121984	A	1.4897046818041	0	lncRNA	AK125393	NA	AK125393	NA	Hs.586876	LOC100505648	uncharacterized LOC100505648	NA	THC2508977	NA	"BROAD Institute lincRNA (XLOC_l2_004898), lincRNA [TCONS_l2_00009502]"	chr15:40983434-40983375	hs|15q15.1	Agilent_HUMAN_G3V2	AK125393	AK125393	chr15	 40983375	 40983434	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13649_PI429285431	1.7354246	A	1.2267084	A	1.42278355059636	0	lncRNA	15287-1_{1..300}	lnc-GTF2B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GTF2B-2:2	chr1	 88995525	 88995824	-	lnc-GTF2B-2	lnc-GTF2B-2:2	XLOC_000905	linc-SEP15-5	NA	NA	NA	inter
CUST_40511_PI429285431	2.2820933	A	2.1045532	A	1.13095388172052	0	lncRNA	41276-1_{1..1235}	n409515|NR_033900|lncRNA|Homosapiens||RefGeneNoncode|NR_033900||1.3290400|-0.1607551	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n409515|NR_033900|lncRNA|Homosapiens||RefGeneNoncode|NR_033900||1.3290400|-0.1607551	chr4	187207251	187208485	-	NA	NA	NA	NA	F11	"hg19_refFlat_F11:range=chr4:187188291-1872097685'pad=0,hg19_refFlat_F11:range=chr4:187188291-1872097685'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.50chr4:187197251-187210835"	NA	inter
CUST_50518_PI429285431	8.001444	P	8.350239	P	0.7852396895153	0	lncRNA	54214-1_{1..1848}	hg19_lincRNAsTranscripts_TCONS_l2_00030863 range=chrX:134807294-134819989 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030863 range=chrX:134807294-134819989 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	134807294	134809141	-	NA	NA	NA	NA	LOC644717	NA	chrX:134797294-134822210	inter
LNCA_21_P0010458	0.8781392	A	0.88563067	A	0.994820767407035	0	lncRNA	TCONS_00029736	NA	NA	NA	NA	XLOC_014411	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014411), lincRNA [TCONS_00029736]"	chr22:50055699-50055640	hs|22q13.33	Agilent_HUMAN_G3V2	TCONS_00029736	TCONS_00029736	chr22	 50055640	 50055699	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15806_PI429285431	0.8882562	A	1.2189375	A	0.795160887364799	0	lncRNA	17496-1_{1..1816}	lnc-KAT7-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KAT7-3:1	chr17	 47977899	 47979714	+	lnc-KAT7-3	lnc-KAT7-3:1	XLOC_012236	linc-DLX4-1	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20"	NA	inter
LNCA_21_P0002134	0.8749838	A	0.8787652	A	0.997382365247729	0	lncRNA	ENST00000456031	NA	NA	NA	NA	XLOC_002451	NA	ENST00000456031	NA	NA	"BROAD Institute lincRNA (XLOC_002451), lincRNA [TCONS_00003480]"	chr2:199747357-199747298	hs|2q33.1	Agilent_HUMAN_G3V2	ENST00000456031	ENST00000456031	chr2	199747298	199747357	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9416_PI429285431	1.43146	A	1.0967648	A	1.2611109441851	0	lncRNA	10919-1_{1..315}	lnc-ALG14-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALG14-3:3	chr1	 95783467	 95783781	-	lnc-ALG14-3	lnc-ALG14-3:3	XLOC_000927	linc-ALG14-1	NA	NA	NA	inter
CUST_42115_PI429285431	11.149645	P	11.302483	P	0.899479308867792	0	lncRNA	44084-1_{1..82}	ENST00000578076 ncrna:miRNA chromosome:GRCh37:19:10890930:10891011:1 gene:ENSG00000265879 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578076 ncrna:miRNA chromosome:GRCh37:19:10890930:10891011:1 gene:ENSG00000265879 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 10890930	 10891011	+	ENSG00000265879	ENST00000578076	NA	NA	DNM2	NA	chr19:10880930-10901011	inner
CUST_7440_PI429285431	0.90331686	A	0.8931594	A	1.0070654581588	0	lncRNA	9083-1_{1..1979}	lnc-SRP68-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRP68-1:1	chr17	 74069372	 74071350	-	lnc-SRP68-1	lnc-SRP68-1:1	ENSG00000247689	ENST00000501755	SRP68	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr17:74059372-74068607"	NA	inter
CUST_28219_PI429285431	0.91091126	A	1.0721785	A	0.89423924055633	0	lncRNA	29852-1_{1..852}	n325506|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322393|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322393|-1.1120700|-0.4249482	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325506|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322393|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322393|-1.1120700|-0.4249482	chr2	   308052	   308903	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26214_PI429285431	5.8814178	P	6.0812817	P	0.870632692586873	0	lncRNA	27723-1_{1..380}	lnc-MYBPH-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYBPH-2:1	chr1	203096935	203097314	-	lnc-MYBPH-2	lnc-MYBPH-2:1	ENSG00000234775.1	RP11-335O13.7	ADORA1	NA	chr1:203096836-203107082	inner
CUST_21841_PI429285431	1.6525811	A	1.6751894	A	0.984451269933485	0	lncRNA	23451-1_{1..382}	lnc-GFOD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GFOD1-1:1	chr6	 13283533	 13283914	-	lnc-GFOD1-1	lnc-GFOD1-1:1	ENSG00000215022.2	RP1-257A7.4	PHACTR1	NA	chr6:13273533-13288075	inner
CUST_30491_PI429285431	11.631677	P	11.546992	P	1.06045617464346	0	lncRNA	32271-1_{1..716}	n335645|CR608741|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000287936|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000287936|1.2517100|-0.0341077	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335645|CR608741|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000287936|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000287936|1.2517100|-0.0341077	chr16	 31488263	 31488978	+	NA	NA	NA	NA	ARMC5	NA	chr16:31478263-31478488	inner
LNCA_21_P0003217	6.175791	P	6.5002675	P	0.798588111506029	0	lncRNA	TCONS_00006784	NA	NA	NA	NA	XLOC_002581	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002581), lincRNA [TCONS_00006784]"	chr3:14272126-14272185	hs|3p25.1	Agilent_HUMAN_G3V2	TCONS_00006784	TCONS_00006784	chr3	 14272126	 14272185	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007773	6.4820514	P	6.6899843	P	0.865776832015924	0	lncRNA	TCONS_00020947	NA	NA	NA	NA	XLOC_010216	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010216), lincRNA [TCONS_00020947]"	chr12:119393870-119393811	hs|12q24.23	Agilent_HUMAN_G3V2	TCONS_00020947	TCONS_00020947	chr12	119393811	119393870	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27854_PI429285431	5.9357867	P	6.1527753	P	0.860359429039702	0	lncRNA	29447-1_{1..480}	n325090|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077517|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077517|-0.3817170|-0.0345182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325090|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000077517|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000077517|-0.3817170|-0.0345182	chr20	  1290265	  1290744	+	NA	NA	NA	NA	SDCBP2	"hg19_refFlat_SDCBP2:range=chr20:1291085-13010605'pad=0,hg19_refFlat_SDCBP2:range=chr20:1291085-13010605'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_SDCBP2:range=chr20:1291085-12941125'pad=0,hg19_refFlat_SDCBP2:range=chr20:1291085-12941125'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20chr20:1290553-1301229"	NA	inter
LNCA_21_P0010367	4.5970664	P	4.393759	P	1.15133478406099	0	lncRNA	ENST00000449941	NA	NA	NA	NA	XLOC_014275	NA	ENST00000449941	NA	NA	"BROAD Institute lincRNA (XLOC_014275), lincRNA [TCONS_00029438]"	chr22:48257752-48257811	hs|22q13.31	Agilent_HUMAN_G3V2	ENST00000449941	ENST00000449941	chr22	 48257752	 48257811	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20493_PI429285431	0.88481337	A	0.87850773	A	1.00438030218795	0	lncRNA	22135-1_{1..1933}	lnc-FAM83B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-FAM83B-1:1	chr6	 54807965	 54809897	+	lnc-FAM83B-1	lnc-FAM83B-1:1	ENSG00000261116.1	RP3-523K23.2	FAM83B	NA	chr6:54797965-54806820	inter
CUST_20985_PI429285431	5.076242	P	4.623576	P	1.36856693789617	0	lncRNA	22614-1_{1..443}	lnc-PAFAH1B1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAFAH1B1-2:1	chr17	  2615776	  2616218	+	lnc-PAFAH1B1-2	lnc-PAFAH1B1-2:1	ENSG00000262050.1	RP11-74E22.3	KIAA0664	NA	chr17:2605776-2614927	inter
CUST_8883_PI429285431	4.546231	P	4.289442	P	1.19481644532722	0	lncRNA	10420-1_{1..497}	lnc-SERPINC1-1:24	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:24	chr1	173836129	173836625	-	lnc-SERPINC1-1	lnc-SERPINC1-1:24	ENSG00000234741	GAS5	DARS2	NA	chr1:173826129-173827682	inter
CUST_19392_PI429285431	0.8954415	A	0.90627706	A	0.992517496497045	0	lncRNA	21054-1_{1..581}	lnc-SIX2-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIX2-3:3	chr2	 45165962	 45166542	-	lnc-SIX2-3	lnc-SIX2-3:3	ENSG00000259439.1	RP11-89K21.1	SIX3	NA	chr2:45169037-45173216	inter
CUST_36724_PI429285431	3.3729467	P	3.6044521	P	0.851745662173212	0	lncRNA	37901-1_{1..1790}	n345208|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_757|NULL|-1.3731700|-0.2495813	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345208|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_757|NULL|-1.3731700|-0.2495813	chr13	 21902974	 21904763	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44074_PI429285431	6.3648615	P	6.4582963	P	0.937288573486137	0	lncRNA	48743-2_{3001..4007}	"gi|381214356|ref|NR_046477.1| Homo sapiens DIS3 mitotic control homolog (S. cerevisiae)-like 2 (DIS3L2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|381214356|ref|NR_046477.1| Homo sapiens DIS3 mitotic control homolog (S. cerevisiae)-like 2 (DIS3L2), transcript variant 5, non-coding RNA"	Chr2	232829293	232830299	+	129563	NR_046477.1	NA	NA	NA	NA	NA	inter
CUST_28955_PI429285431	1.1532804	A	0.9229308	A	1.17311919002422	0	lncRNA	30675-1_{1..537}	n326384|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099634|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099634|-1.0039900|-0.2566309	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326384|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099634|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099634|-1.0039900|-0.2566309	chr1	147572533	147573069	-	NA	NA	NA	NA	NBPF24	NA	chr1:147562533-147589700	inter
CUST_46343_PI429285431	5.660795	P	4.914558	P	1.67741190456906	0	lncRNA	50567-2_{3001..4262}	"gi|332164716|ref|NR_038170.1| Homo sapiens fucosyltransferase 8 (alpha (1,6) fucosyltransferase) (FUT8), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|332164716|ref|NR_038170.1| Homo sapiens fucosyltransferase 8 (alpha (1,6) fucosyltransferase) (FUT8), transcript variant 2, non-coding RNA"	Chr14	 65882448	 65883709	+	2530	NR_038170.1	NA	NA	NA	NA	NA	inter
CUST_38570_PI429285431	8.342622	P	8.371489	P	0.980189773475273	0	lncRNA	39582-1_{1..1893}	n383543|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002pxl.3||2.9474000|-0.1354091	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n383543|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002pxl.3||2.9474000|-0.1354091	chr19	 52196592	 52198484	+	NA	NA	NA	NA	HAS1	NA	chr19:52216365-52218442	inter
LNCA_21_P0011446	6.5897207	P	6.605957	P	0.988808945428285	0	lncRNA	TCONS_l2_00009838	NA	NA	NA	NA	XLOC_l2_005294	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005294), lincRNA [TCONS_l2_00009838]"	chr16:74877049-74877108	hs|16q23.1	Agilent_HUMAN_G3V2	TCONS_l2_00009838	TCONS_l2_00009838	chr16	 74877049	 74877108	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3631_PI429285431	0.9200499	A	1.1595001	A	0.847068061992753	0	lncRNA	3601-1_{1..880}	"transcript_id ""ENST00000434458.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434458.1"" | genecode_v17"	chr10	 26937029	 26937908	+	ENSG00000231976.3	ENST00000434458.1	LINC00202-2	LINC00202-2-002	NA	NA	NA	inter
LNCA_21_P0007818	1.4122039	A	0.93634915	A	1.39074194527954	0	lncRNA	TCONS_00021051	NA	NA	NA	NA	XLOC_009650	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009650), lincRNA [TCONS_00021051]"	chr12:9499708-9500599	hs|12p13.31	Agilent_HUMAN_G3V2	TCONS_00021051	TCONS_00021051	chr12	  9499708	  9500599	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10988_PI429285431	5.116029	P	4.529344	P	1.50179198783302	0	lncRNA	12532-1_{1..312}	lnc-TBP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBP-2:1	chr6	171044839	171045150	+	lnc-TBP-2	lnc-TBP-2:1	XLOC_005566	TCONS_00012033	NA	NA	NA	inter
CUST_11918_PI429285431	0.90885293	A	0.929332	A	0.985905264493448	0	lncRNA	13499-1_{1..294}	lnc-TRIML1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIML1-5:3	chr4	189706916	189707209	+	lnc-TRIML1-5	lnc-TRIML1-5:3	XLOC_003836	linc-FRG1-8	NA	NA	NA	inter
CUST_16064_PI429285431	4.2183676	P	4.3048353	P	0.941825898639451	0	lncRNA	17767-1_{1..472}	lnc-RGS18-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGS18-5:5	chr1	190449475	190449946	+	lnc-RGS18-5	lnc-RGS18-5:5	XLOC_000505	linc-RGS18-3	FAM5C	NA	chr1:190439475-190446759	inter
LNCA_21_P0003759	4.317888	P	4.431012	P	0.924583806488772	0	lncRNA	TCONS_00008555	NA	NA	NA	NA	XLOC_004053	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004053), lincRNA [TCONS_00008555]"	chr4:119584288-119584229	hs|4q26	Agilent_HUMAN_G3V2	TCONS_00008555	TCONS_00008555	chr4	119584229	119584288	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001268	1.4752774	A	0.9251522	A	1.46421275778329	0	lncRNA	TCONS_00000852	NA	NA	NA	NA	XLOC_000070	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000070), lincRNA [TCONS_00000852]"	chr1:18048782-18048841	hs|1p36.13	Agilent_HUMAN_G3V2	TCONS_00000852	TCONS_00000852	chr1	 18048782	 18048841	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014707	5.418713	P	5.541836	P	0.918197876072656	0	lncRNA	XR_112293	XR_112293	XR_112293	NA	NA	LOC100508950	uncharacterized LOC100508950	NA	THC2544198	NA	"PREDICTED: Homo sapiens hypothetical LOC100508950 (LOC100508950), miscRNA [XR_112293]"	chr2:10908060-10908001	hs|2p25.1	Agilent_HUMAN_G3V2	XR_112293	XR_112293	chr2	 10908001	 10908060	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47346_PI429285431	1.2170832	A	0.91227305	A	1.23525607415279	0	lncRNA	51398-1_{1..3000}	"gi|223941873|ref|NR_026916.1| Homo sapiens ankyrin repeat domain 30B pseudogene 2 (ANKRD30BP2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|223941873|ref|NR_026916.1| Homo sapiens ankyrin repeat domain 30B pseudogene 2 (ANKRD30BP2), non-coding RNA"	Chr21	 14410487	 14413486	+	149992	NR_026916.1	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90"	NA	inter
CUST_28949_PI429285431	0.91273594	A	0.9260085	A	0.990842351486064	0	lncRNA	30670-1_{1..537}	n326379|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039137|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039137|-0.4211460|-0.4669123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326379|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039137|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039137|-0.4211460|-0.4669123	chr1	147958055	147958591	-	NA	NA	NA	NA	PPIAL4A	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40chr1:147948055-147955419"	NA	inter
CUST_5351_PI429285431	1.5251076	A	0.923836	A	1.51705311705319	0	lncRNA	5289-1_{1..565}	"transcript_id ""ENST00000560314.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560314.1"" | genecode_v17"	chr15	 97839111	 97839675	+	ENSG00000259485.1	ENST00000560314.1	CTD-2147F2.1	CTD-2147F2.1-001	NA	NA	NA	inter
CUST_13428_PI429285431	10.266838	P	10.423207	P	0.897280522700785	0	lncRNA	15067-1_{1..596}	lnc-CLEC16A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLEC16A-2:2	chr16	 11317958	 11318553	+	lnc-CLEC16A-2	lnc-CLEC16A-2:2	XLOC_011645	linc-C16orf75	NA	NA	NA	inter
CUST_12779_PI429285431	0.9228303	A	1.6664468	A	0.597240332024215	0	lncRNA	14403-1_{1..1269}	lnc-MRPS6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-MRPS6-1:2	chr21	 35561069	 35562337	+	lnc-MRPS6-1	lnc-MRPS6-1:2	XLOC_013923	linc-KCNE2-3	NA	NA	NA	inter
CUST_27294_PI429285431	1.0115433	A	0.91089076	A	1.07225834203274	0	lncRNA	28852-1_{1..771}	n324446|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041582|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041582|-1.0560600|-0.5064537	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324446|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041582|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041582|-1.0560600|-0.5064537	chr6	 98764616	 98765386	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43225_PI429285431	1.2108216	A	0.899101	A	1.24118709335006	0	lncRNA	48039-1_{1..1051}	ENST00000595998 havana:sense_intronic chromosome:GRCh37:13:98885904:98886954:1 gene:ENSG00000269189 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000595998 havana:sense_intronic chromosome:GRCh37:13:98885904:98886954:1 gene:ENSG00000269189 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr13	 98885904	 98886954	+	ENSG00000269189	ENST00000595998	NA	NA	FARP1	NA	chr13:98875904-98896954	inner
LNCA_21_P0009408	3.2672775	P	0.9008165	A	5.15674604971702	0	lncRNA	TCONS_00026125	NA	NA	NA	NA	XLOC_012530	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012530), lincRNA [TCONS_00026125]"	chr17:55162025-55161966	hs|17q22	Agilent_HUMAN_G3V2	TCONS_00026125	TCONS_00026125	chr17	 55161966	 55162025	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43076_PI429285431	0.8859232	A	0.8964893	A	0.992702891701536	0	lncRNA	47182-1_{1..121}	ENST00000516534 ncrna:snRNA chromosome:GRCh37:4:183469812:183469932:1 gene:ENSG00000252343 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516534 ncrna:snRNA chromosome:GRCh37:4:183469812:183469932:1 gene:ENSG00000252343 gene_biotype:snRNA transcript_biotype:snRNA	chr4	183469812	183469932	+	ENSG00000252343	ENST00000516534	NA	NA	ODZ3	NA	chr4:183459812-183479932	inner
LNCA_21_P0003561	0.87979615	A	0.8889837	A	0.993651910422232	0	lncRNA	TCONS_00007958	NA	NA	NA	NA	XLOC_003430	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003430), lincRNA [TCONS_00007958]"	chr4:3641679-3643761	hs|4p16.3	Agilent_HUMAN_G3V2	TCONS_00007958	TCONS_00007958	chr4	  3641679	  3643761	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13372_PI429285431	0.8919111	A	0.8874959	A	1.00306507118587	0	lncRNA	15007-1_{1..316}	lnc-ALX1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALX1-2:2	chr12	 85817896	 85818211	+	lnc-ALX1-2	lnc-ALX1-2:2	XLOC_009820	linc-NTS	NA	NA	NA	inter
CUST_41795_PI429285431	0.9116707	A	1.482859	A	0.67306218108907	0	lncRNA	43377-1_{1..128}	ENST00000384865 ncrna:miRNA chromosome:GRCh37:7:136587914:136588041:1 gene:ENSG00000207597 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384865 ncrna:miRNA chromosome:GRCh37:7:136587914:136588041:1 gene:ENSG00000207597 gene_biotype:miRNA transcript_biotype:miRNA	chr7	136587914	136588041	+	ENSG00000207597	ENST00000384865	NA	NA	CHRM2	NA	chr7:136577914-136598041	inter
CUST_30862_PI429285431	5.3006825	P	5.8650312	P	0.676260643287508	0	lncRNA	32650-1_{1..317}	n336859|AY566847|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331939_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331939_03|-1.2684300|-0.2656808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336859|AY566847|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331939_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331939_03|-1.2684300|-0.2656808	chr6	   928519	   928835	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13241_PI429285431	6.4692497	P	6.6204987	P	0.900470550938027	0	lncRNA	14871-1_{1..378}	lnc-CDKL5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDKL5-1:1	chrX	 18376769	 18377146	+	lnc-CDKL5-1	lnc-CDKL5-1:1	XLOC_007938	linc-CDKL5-1	SCML2	NA	chrX:18366769-18372844	inter
CUST_33463_PI429285431	1.3960968	A	0.89443415	A	1.41584432809191	0	lncRNA	35036-1_{1..1075}	n340198|BC020624|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2659|NULL|-0.7773790|-0.2488603	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340198|BC020624|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2659|NULL|-0.7773790|-0.2488603	chr4	109088680	109089754	+	NA	NA	NA	NA	LEF1	"hg19_refFlat_LEF1:range=chr4:108984785-1090889235'pad=0,hg19_refFlat_LEF1:range=chr4:108984785-1090889235'pad=0 3'pad=0 strand=- repeatMasking=none,-104.30;hg19_refFlat_LEF1:range=chr4:108969828-1090889235'pad=0,hg19_refFlat_LEF1:range=chr4:108969828-1090889235'pad=0 3'pad=0 strand=- repeatMasking=none,-104.30chr4:109078680-109090112"	NA	inner
CUST_24429_PI429285431	0.89407766	A	1.2029662	A	0.807263439803589	0	lncRNA	25982-1_{1..570}	lnc-THOC5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THOC5-1:1	chr22	 29873999	 29874568	-	lnc-THOC5-1	lnc-THOC5-1:1	ENSG00000224381.1	AC000035.3	NEFH	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10chr22:29876181-29884059"	NA	inter
CUST_48192_PI429285431	1.9131542	A	2.44256	A	0.692840033975472	0	lncRNA	52055-1_{1..1106}	"gi|410170268|ref|XR_172495.1| PREDICTED: Homo sapiens family with sequence similarity 72, member C (FAM72C), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170268|ref|XR_172495.1| PREDICTED: Homo sapiens family with sequence similarity 72, member C (FAM72C), misc_RNA"	NA	NA	NA	NA	NA	XR_172495.1	NA	NA	NA	NA	NA	Unknown
CUST_34602_PI429285431	9.506832	P	9.759976	P	0.839065883080965	0	lncRNA	36057-2_{3001..5418}	n341483|AL137475|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3953|NULL|0.2343500|-0.3342216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341483|AL137475|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3953|NULL|0.2343500|-0.3342216	chr8	 35532680	 35535097	-	NA	NA	NA	NA	UNC5D	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20chr8:35519680-35577838"	NA	inner
LNCA_33_P3324298	4.439612	P	4.1440773	P	1.22733977675188	0	lncRNA	XR_110198	XR_110198	XR_110198	   729995	Hs.58456	LOC729995	hCG1817208	NA	THC2668347	NA	"PREDICTED: Homo sapiens hCG1817208 (LOC729995), miscRNA [XR_110198]"	chr6:167871558-167871499	hs|6q27	Agilent_HUMAN_G3V2	XR_110198	XR_110198	chr6	167871499	167871558	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27039_PI429285431	2.0798557	A	2.0608678	A	1.01324840192714	0	lncRNA	28570-1_{1..237}	n324145|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051798|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051798|-1.1277100|-0.3373084	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324145|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051798|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051798|-1.1277100|-0.3373084	chr9	 18350594	 18350830	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40440_PI429285431	9.986578	P	9.975607	P	1.00763350549555	0	lncRNA	41218-2_{3001..3314}	n409330|NR_033685|lncRNA|Homosapiens||RefGeneNoncode|NR_033685||6.1430900|-0.0946908	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409330|NR_033685|lncRNA|Homosapiens||RefGeneNoncode|NR_033685||6.1430900|-0.0946908	chr17	 79863776	 79864089	-	NA	NA	NA	NA	ANAPC11	NA	chr17:79850776-79858363	inter
CUST_22222_PI429285431	0.89026856	A	0.88535273	A	1.00341320546966	0	lncRNA	23822-1_{1..293}	lnc-GK-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GK-5:1	chrX	 32774275	 32774567	+	lnc-GK-5	lnc-GK-5:1	ENSG00000236828.1	DMD-AS3	DMD	NA	chrX:32764275-32784517	inner
CUST_20046_PI429285431	5.736665	P	4.733251	P	2.0047384132388	0	lncRNA	21697-1_{1..536}	lnc-TENC1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TENC1-1:2	chr12	 53407340	 53407875	+	lnc-TENC1-1	lnc-TENC1-1:2	ENSG00000257475.1	RP11-983P16.2	EIF4B	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10chr12:53400062-53417705"	NA	inner
CUST_33252_PI429285431	5.641755	P	4.854403	P	1.72590373718681	0	lncRNA	34838-1_{1..2182}	n339956|AJ292190|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2407|NULL|14.9142000|-0.0861886	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339956|AJ292190|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2407|NULL|14.9142000|-0.0861886	chr10	  7860672	  7862853	+	NA	NA	NA	NA	TAF3	NA	chr10:7860673-8017654	inner
LNCA_21_P0010408	0.8748604	A	1.2501814	A	0.770933860646649	0	lncRNA	TCONS_00029565	NA	NA	NA	NA	XLOC_014197	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014197), lincRNA [TCONS_00029565]"	chr22:27703927-27703986	hs|22q12.1	Agilent_HUMAN_G3V2	TCONS_00029565	TCONS_00029565	chr22	 27703927	 27703986	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8525_PI429285431	7.428813	P	7.5191355	P	0.939312751803131	0	lncRNA	10086-1_{1..2162}	lnc-HAGHL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HAGHL-1:1	chr16	   783469	   785630	+	lnc-HAGHL-1	lnc-HAGHL-1:1	ENSG00000245986	ENST00000502230	NARFL	"hg19_refFlat_NARFL:range=chr16:780417-7909855'pad=0,hg19_refFlat_NARFL:range=chr16:780417-7909855'pad=0 3'pad=0 strand=- repeatMasking=none,-101.00chr16:779767-790997"	NA	inner
CUST_17768_PI429285431	3.68414	P	3.3044055	A	1.30110239078522	0	lncRNA	19500-1_{1..241}	lnc-GCA-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GCA-4:1	chr2	164309776	164310016	+	lnc-GCA-4	lnc-GCA-4:1	XLOC_001734	linc-SCN2A-2	NA	NA	NA	inter
CUST_24152_PI429285431	1.8576279	A	0.8695104	A	1.98359500838419	0	lncRNA	25704-1_{1..650}	lnc-TM2D2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TM2D2-1:1	chr8	 38829953	 38830602	-	lnc-TM2D2-1	lnc-TM2D2-1:1	ENSG00000253645.1	CTD-2544N14.3	PLEKHA2	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90chr8:38819953-38831431"	NA	inner
CUST_49460_PI429285431	5.4694858	P	5.485939	P	0.988660295483082	0	lncRNA	53258-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00024861 range=chr6:107164396-107235397 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024861 range=chr6:107164396-107235397 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	107170396	107173395	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30"	NA	inter
CUST_4038_PI429285431	2.6796458	A	3.3172498	P	0.642779578700189	0	lncRNA	4000-1_{1..436}	"transcript_id ""ENST00000533329.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533329.1"" | genecode_v17"	chr11	 82783444	 82783879	-	ENSG00000255503.1	ENST00000533329.1	RP11-113K21.4	RP11-113K21.4-001	RAB30	NA	chr11:82773444-82782884	inter
LNCA_21_P0004265	0.87470174	A	0.8751415	A	0.999695228048287	0	lncRNA	TCONS_00009997	NA	NA	NA	NA	XLOC_004425	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004425), lincRNA [TCONS_00009997]"	chr5:72734378-72734437	hs|5q13.2	Agilent_HUMAN_G3V2	TCONS_00009997	TCONS_00009997	chr5	 72734378	 72734437	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009497	0.8731864	A	1.5024437	A	0.64650915284229	0	lncRNA	TCONS_00026359	NA	NA	NA	NA	XLOC_012711	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012711), lincRNA [TCONS_00026359]"	chr18:68870542-68870601	hs|18q22.3	Agilent_HUMAN_G3V2	TCONS_00026359	TCONS_00026359	chr18	 68870542	 68870601	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008728	5.2325883	P	6.0768766	P	0.556985509460359	0	lncRNA	TCONS_00024081	NA	NA	NA	NA	XLOC_011437	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011437), lincRNA [TCONS_00024081]"	chr15:39812007-39811948	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00024081	TCONS_00024081	chr15	 39811948	 39812007	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5910_PI429285431	0.90481275	A	0.9135815	A	0.993940399545011	0	lncRNA	5841-1_{1..472}	"transcript_id ""ENST00000581805.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581805.1"" | genecode_v17"	chr17	 55849307	 55849778	-	ENSG00000265542.1	ENST00000581805.1	RP11-60A24.3	RP11-60A24.3-001	MRPS23	NA	chr17:55916287-55921970	inter
CUST_38228_PI429285431	0.8774421	A	1.3905685	A	0.70070233065454	0	lncRNA	39291-1_{1..3000}	n381628|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001mwl.2||1.2882100|-0.3640931	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381628|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001mwl.2||1.2882100|-0.3640931	chr11	 36084835	 36087834	-	NA	NA	NA	NA	LDLRAD3	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.54;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60chr11:36074835-36109448"	NA	inner
CUST_4673_PI429285431	8.303331	P	8.083448	P	1.16463913247775	0	lncRNA	4619-1_{1..330}	"transcript_id ""ENST00000434117.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434117.2"" | genecode_v17"	chr13	 90203487	 90203816	+	ENSG00000271395.1	ENST00000434117.2	RP11-75N6.3	RP11-75N6.3-001	NA	NA	NA	inter
CUST_5774_PI429285431	9.825632	P	8.320157	P	2.83918134453932	0	lncRNA	5697-1_{1..1514}	"transcript_id ""ENST00000578585.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578585.1"" | genecode_v17"	chr17	 20691384	 20692897	+	ENSG00000264215.1	ENST00000578585.1	RP11-283C24.1	RP11-283C24.1-001	NA	NA	NA	inter
CUST_24050_PI429285431	3.0392444	A	2.9590752	A	1.05714201543858	0	lncRNA	25602-1_{1..647}	lnc-SLC5A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC5A2-1:1	chr16	 31520489	 31521135	+	lnc-SLC5A2-1	lnc-SLC5A2-1:1	ENSG00000260625.1	RP11-452L6.7	C16orf58	NA	chr16:31510489-31519706	inter
CUST_16691_PI429285431	5.007423	P	5.1111164	P	0.930647416877597	0	lncRNA	18396-1_{1..969}	lnc-SLC25A32-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A32-2:2	chr8	104457713	104458681	-	lnc-SLC25A32-2	lnc-SLC25A32-2:2	XLOC_007176	linc-SLC25A32-2	DCAF13	NA	chr8:104447713-104455681	inter
CUST_31424_PI429285431	6.925282	P	7.573735	P	0.637964035015308	0	lncRNA	33195-2_{3001..4809}	n337890|AL157461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|273|NULL|1.4498600|-0.1964324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n337890|AL157461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|273|NULL|1.4498600|-0.1964324	chr1	 41483261	 41485069	+	NA	NA	NA	NA	SCMH1	"hg19_refFlat_SCMH1:range=chr1:41493866-416254025'pad=0,hg19_refFlat_SCMH1:range=chr1:41493866-416254025'pad=0 3'pad=0 strand=- repeatMasking=none,-98.10;hg19_refFlat_SCMH1:range=chr1:41493866-416087485'pad=0,hg19_refFlat_SCMH1:range=chr1:41493866-416087485'pad=0 3'pad=0 strand=- repeatMasking=none,-98.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SCMH1:range=chr1:41493866-416518055'pad=0,hg19_refFlat_SCMH1:range=chr1:41493866-416518055'pad=0 3'pad=0 strand=- repeatMasking=none,-98.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SLFNL1:range=chr1:41481778-414863325'pad=0,hg19_refFlat_SLFNL1:range=chr1:41481778-414863325'pad=0 3'pad=0 strand=- repeatMasking=none,-105.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_SCMH1:range=chr1:41493866-416183465'pad=0,hg19_refFlat_SCMH1:range=chr1:41493866-416183465'pad=0 3'pad=0 strand=- repeatMasking=none,-98.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50chr1:41492871-41519562"	NA	inner
CUST_2363_PI429285431	1.0613364	A	0.93452406	A	1.09187850931921	0	lncRNA	2356-1_{1..663}	"transcript_id ""ENST00000513708.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513708.1"" | genecode_v17"	chr5	127270935	127271597	+	ENSG00000230561.3	ENST00000513708.1	CTC-228N24.1	CTC-228N24.1-003	NA	NA	NA	inter
CUST_15062_PI429285431	0.90046555	A	0.90250814	A	0.998585186294384	0	lncRNA	16725-1_{1..915}	lnc-PRDM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRDM2-1:1	chr1	 14000736	 14001650	+	lnc-PRDM2-1	lnc-PRDM2-1:1	XLOC_000056	linc-PRDM2	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90"	NA	inter
CUST_12337_PI429285431	2.2188897	A	2.973565	A	0.592679761866186	0	lncRNA	13949-1_{1..323}	lnc-PIF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIF1-1:1	chr15	 65128483	 65128805	-	lnc-PIF1-1	lnc-PIF1-1:1	XLOC_011504	linc-PIF1	PLEKHO2	NA	chr15:65134082-65138508	inter
CUST_65_PI429201921	1.0258183	A	0.92052525	A	1.07571287436039	0	lncRNA	67-1_{1..1923}	TC09002446.hg.1	TCONS_l2_00029910-XLOC_l2_015140 // Broad TUCP // linc-TAF1L-1 chr9:-:32643100-32645024 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:-:32643100-32645024	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00029910-XLOC_l2_015140	linc-TAF1L-1	chr9	 32643100	 32645024	-	NA	NA	NA	NA	VAT1	NA	chr17:41171274-41174459	Unknown
CUST_36179_PI429285431	11.17794	P	10.794732	P	1.30423875982323	0	lncRNA	37448-2_{3001..6000}	n344736|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_285|NULL|-1.6131600|-0.3223694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344736|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_285|NULL|-1.6131600|-0.3223694	chrX	 45607650	 45610649	-	NA	NA	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-22.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.00;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10"	NA	inter
CUST_332_PI429201921	6.0137815	P	6.1569247	P	0.90554409544863	0	lncRNA	220-2_{3001..6000}	TC0Y000305.hg.1	TCONS_l2_00031035-XLOC_l2_015932 // Broad TUCP // linc-AMELY-10 chrY:-:9355207-9363096 // chrY // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00031036-XLOC_l2_015932 // Broad TUCP // linc-AMELY-10 chrY:-:9357274-9362877 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:9355207-9363096	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031035-XLOC_l2_015932	linc-AMELY-10	chrY	  9355207	  9363096	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45229_PI429285431	6.209446	P	6.1734843	P	1.02524001992993	0	lncRNA	49686-1_{1..691}	"gi|282847414|ref|NR_033196.1| Homo sapiens zinc finger, AN1-type domain 1 (ZFAND1), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|282847414|ref|NR_033196.1| Homo sapiens zinc finger, AN1-type domain 1 (ZFAND1), transcript variant 7, non-coding RNA"	Chr8	 82615149	 82615839	-	79752	NR_033196.1	NA	NA	NA	NA	NA	inter
CUST_30093_PI429285431	8.083599	P	8.268437	P	0.879747857125245	0	lncRNA	31865-1_{1..497}	n334630|U87393|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000222023|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000222023|3.4909700|-0.0478052	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334630|U87393|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000222023|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000222023|3.4909700|-0.0478052	chr15	 60297184	 60297680	+	NA	NA	NA	NA	FOXB1	NA	chr15:60287184-60298142	inner
CUST_20649_PI429285431	1.5709864	A	1.3669376	A	1.15192660627872	0	lncRNA	22288-1_{1..569}	lnc-SPRYD3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPRYD3-1:2	chr12	 53448105	 53448673	-	lnc-SPRYD3-1	lnc-SPRYD3-1:2	ENSG00000257337.1	RP11-983P16.4	SPRYD3	"hg19_refFlat_TENC1:range=chr12:53448076-534576665'pad=0,hg19_refFlat_TENC1:range=chr12:53448076-534576665'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.10;hg19_refFlat_TENC1:range=chr12:53443970-534576665'pad=0,hg19_refFlat_TENC1:range=chr12:53443970-534576665'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.10;hg19_refFlat_TENC1:range=chr12:53442928-534576665'pad=0,hg19_refFlat_TENC1:range=chr12:53442928-534576665'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.10chr12:53458100-53458202"	NA	inner
CUST_4572_PI429285431	1.0150344	A	0.88558567	A	1.093875639209	0	lncRNA	4521-1_{1..480}	"transcript_id ""ENST00000432770.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432770.1"" | genecode_v17"	chr13	 30681736	 30682215	-	ENSG00000224511.1	ENST00000432770.1	LINC00365	LINC00365-001	NA	NA	NA	inter
LNCA_21_P0009846	4.75377	P	5.2516966	P	0.708123745404766	0	lncRNA	ENST00000416646	NA	NA	NA	NA	XLOC_013545	NA	ENST00000416646	NA	NA	"BROAD Institute lincRNA (XLOC_013545), lincRNA [TCONS_00027939]"	chr20:46587286-46587345	hs|20q13.13	Agilent_HUMAN_G3V2	ENST00000416646	ENST00000416646	chr20	 46587286	 46587345	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45141_PI429285431	0.87700343	A	0.8740841	A	1.0020255740677	0	lncRNA	49621-1_{1..1440}	"gi|379030627|ref|NR_003275.2| Homo sapiens ubiquitin specific peptidase 17-like 2 pseudogene (LOC392196), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|379030627|ref|NR_003275.2| Homo sapiens ubiquitin specific peptidase 17-like 2 pseudogene (LOC392196), non-coding RNA"	Chr8	 11985367	 11986806	-	392196	NR_003275.2	NA	NA	NA	NA	NA	inter
CUST_28390_PI429285431	4.7322493	P	4.9887977	P	0.837088231443635	0	lncRNA	30044-1_{1..415}	n325707|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045195|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045195|-1.2404300|-0.4456890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325707|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045195|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045195|-1.2404300|-0.4456890	chr13	 63139815	 63140229	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004586	2.028536	A	2.5612514	A	0.691252452970459	0	lncRNA	TCONS_00011095	NA	NA	NA	NA	XLOC_005088	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005088), lincRNA [TCONS_00011095]"	chr5:173216329-173216270	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_00011095	TCONS_00011095	chr5	173216270	173216329	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47491_PI429285431	1.0538112	A	1.0509017	A	1.00201874665265	0	lncRNA	51509-1_{1..3000}	"gi|224028240|ref|NR_026963.1| Homo sapiens TTC28 antisense RNA 1 (TTC28-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224028240|ref|NR_026963.1| Homo sapiens TTC28 antisense RNA 1 (TTC28-AS1), transcript variant 1, non-coding RNA"	Chr22	 28315364	 28318363	+	284900	NR_026963.1	NA	NA	NA	"hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0,hg19_refFlat_TTC28:range=chr22:28378209-290757115'pad=0 3'pad=0 strand=- repeatMasking=none,-99.60"	NA	inter
CUST_12216_PI429285431	1.7038895	A	1.1146536	A	1.50444972899807	0	lncRNA	13819-1_{1..608}	lnc-NR1I2-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR1I2-1:12	chr3	119823623	119824230	+	lnc-NR1I2-1	lnc-NR1I2-1:12	XLOC_002779	linc-NDUFB4-5	NA	"hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0,hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50"	NA	inter
LNCA_21_P0003859	4.6055946	P	4.0976863	P	1.42198702394936	0	lncRNA	TCONS_00008931	NA	NA	NA	NA	XLOC_003775	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003775), lincRNA [TCONS_00008931]"	chr4:171194916-171194975	hs|4q33	Agilent_HUMAN_G3V2	TCONS_00008931	TCONS_00008931	chr4	171194916	171194975	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37327_PI429285431	5.61294	P	5.0457025	P	1.48168369635239	0	lncRNA	38434-1_{1..3000}	n345771|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1320|NULL|-1.3172200|-0.2433726	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345771|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1320|NULL|-1.3172200|-0.2433726	chr12	121405936	121408935	-	NA	NA	NA	NA	HNF1A	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-25.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-28.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-44.01;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr12:121416549-121422502"	NA	inter
CUST_20691_PI429285431	4.448369	P	4.62216	P	0.886510116628336	0	lncRNA	22327-1_{1..535}	lnc-TMBIM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMBIM1-1:1	chr2	219222637	219223171	-	lnc-TMBIM1-1	lnc-TMBIM1-1:1	ENSG00000237281.1	AC021016.8	C2orf62	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40chr2:219218765-219232689"	NA	inner
CUST_15127_PI429285431	6.4660463	P	6.7038684	P	0.848024528839878	0	lncRNA	16787-1_{1..619}	lnc-PIPOX-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIPOX-1:1	chr17	 27343365	 27343983	+	lnc-PIPOX-1	lnc-PIPOX-1:1	XLOC_012160	linc-PIPOX-1	NA	NA	NA	inter
CUST_42536_PI429285431	6.214156	P	6.2484493	P	0.976509984234579	0	lncRNA	45335-1_{1..111}	ENST00000516329 ncrna:snoRNA chromosome:GRCh37:16:7776843:7776953:-1 gene:ENSG00000252138 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516329 ncrna:snoRNA chromosome:GRCh37:16:7776843:7776953:-1 gene:ENSG00000252138 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	  7776843	  7776953	-	ENSG00000252138	ENST00000516329	NA	NA	NA	NA	NA	inter
LNCA_21_P0012153	6.288884	P	6.891252	P	0.658671941608526	0	lncRNA	BC007940	NA	BC007940	NA	NA	XLOC_l2_008689	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008689), lincRNA [TCONS_l2_00016808]"	chr20:57331823-57331882	hs|20q13.32	Agilent_HUMAN_G3V2	BC007940	BC007940	chr20	 57331823	 57331882	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37963_PI429285431	5.1322455	P	4.8090825	P	1.25107042180601	0	lncRNA	39051-1_{1..1059}	n346510|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2060|NULL|-1.3177200|-0.4382748	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346510|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2060|NULL|-1.3177200|-0.4382748	chr7	 65221486	 65222544	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11678_PI429285431	13.145215	P	14.035947	P	0.539340396271718	0	lncRNA	13256-1_{1..363}	lnc-EFR3B-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFR3B-3:8	chr2	 25195495	 25195857	+	lnc-EFR3B-3	lnc-EFR3B-3:8	XLOC_001398	linc-EFR3B	DNAJC27	NA	chr2:25185495-25194963	inter
CUST_8724_PI429285431	1.2433947	A	1.1235228	A	1.08663837328078	0	lncRNA	10267-1_{1..442}	lnc-XRN2-2:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-XRN2-2:13	chr20	 21213372	 21213813	+	lnc-XRN2-2	lnc-XRN2-2:13	ENSG00000088970	PLK1S1	PLK1S1	NA	chr20:21203372-21223552	inner
LNCA_21_P0004501	0.8754908	A	1.5573065	A	0.623380227020881	0	lncRNA	TCONS_00010665	NA	NA	NA	NA	XLOC_004341	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004341), lincRNA [TCONS_00010665]"	chr5:37872344-37872403	hs|5p13.2	Agilent_HUMAN_G3V2	TCONS_00010665	TCONS_00010665	chr5	 37872344	 37872403	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003783	1.0213317	A	0.87464345	A	1.10702534304287	0	lncRNA	ENST00000504755	NA	NA	NA	NA	XLOC_004120	NA	ENST00000504755	NA	NA	"BROAD Institute lincRNA (XLOC_004120), lincRNA [TCONS_00008616]"	chr4:150069029-150068970	hs|4q31.23	Agilent_HUMAN_G3V2	ENST00000504755	ENST00000504755	chr4	150068970	150069029	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010992	1.069001	A	0.87473965	A	1.14413821966442	0	lncRNA	TCONS_l2_00004709	NA	NA	NA	NA	XLOC_l2_002433	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002433), lincRNA [TCONS_l2_00004709]"	chr11:88156492-88156551	hs|11q14.2	Agilent_HUMAN_G3V2	TCONS_l2_00004709	TCONS_l2_00004709	chr11	 88156492	 88156551	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18195_PI429285431	2.2673888	A	2.6090739	A	0.789119064689658	0	lncRNA	19930-1_{1..2022}	lnc-CKAP2L-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,UCSC,"	>lnc-CKAP2L-1:3	chr2	113401676	113403697	-	lnc-CKAP2L-1	lnc-CKAP2L-1:3	ENSG00000237753	AC079922.3	SLC20A1	NA	chr2:113403434-113413267	inter
CUST_810_PI429285431	5.732009	P	6.2663317	P	0.69048276058361	0	lncRNA	803-1_{1..717}	"transcript_id ""ENST00000421581.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421581.1"" | genecode_v17"	chr2	 23240997	 23241713	-	ENSG00000232451.1	ENST00000421581.1	AC016768.1	AC016768.1-001	NA	NA	NA	inter
CUST_30361_PI429285431	0.8801664	A	0.87677425	A	1.0023540255862	0	lncRNA	32137-1_{1..320}	n335456|AY764262|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257658|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257658|0.6608800|-0.1605465	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335456|AY764262|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000257658|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000257658|0.6608800|-0.1605465	chr1	107937920	107938239	+	NA	NA	NA	NA	NTNG1	NA	chr1:107927920-108024475	inner
CUST_2520_PI429285431	4.0179605	P	4.050402	P	0.977764207874889	0	lncRNA	2508-1_{1..595}	"transcript_id ""ENST00000450618.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450618.1"" | genecode_v17"	chr6	 35512409	 35513003	+	ENSG00000228559.1	ENST00000450618.1	RP3-340B19.3	RP3-340B19.3-001	NA	NA	NA	inter
CUST_46167_PI429285431	8.127395	P	8.311119	P	0.880427430811215	0	lncRNA	50416-1_{1..3000}	"gi|217035108|ref|NR_024563.1| Homo sapiens uncharacterized LOC100130238 (LOC100130238), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|217035108|ref|NR_024563.1| Homo sapiens uncharacterized LOC100130238 (LOC100130238), non-coding RNA"	NW_003315937.1	    49430	    52429	+	100130238	NR_024563.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010874	2.2729888	A	0.87020665	A	2.64410991395385	0	lncRNA	TCONS_l2_00003544	NA	NA	NA	NA	XLOC_l2_001960	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001960), lincRNA [TCONS_l2_00003544]"	chr10:47640653-47640070	hs|10q11.22	Agilent_HUMAN_G3V2	TCONS_l2_00003544	TCONS_l2_00003544	chr10	 47640070	 47640653	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21485_PI429285431	0.8935702	A	0.8860017	A	1.00525986923188	0	lncRNA	23103-1_{1..705}	lnc-EEPD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EEPD1-1:1	chr7	 36359384	 36360088	+	lnc-EEPD1-1	lnc-EEPD1-1:1	ENSG00000260070.1	RP11-182J23.1	KIAA0895	NA	chr7:36363759-36370088	inter
CUST_5443_PI429285431	0.90728974	A	0.9325987	A	0.982610145378396	0	lncRNA	5377-1_{1..547}	"transcript_id ""ENST00000567304.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567304.1"" | genecode_v17"	chr16	 18061250	 18061796	-	ENSG00000259929.1	ENST00000567304.1	CTA-481E9.4	CTA-481E9.4-002	NA	NA	NA	inter
CUST_41466_PI429285431	4.2127595	P	4.555442	P	0.788573699710942	0	lncRNA	42657-1_{1..68}	ENST00000583000 ncrna:miRNA chromosome:GRCh37:6:93354459:93354526:1 gene:ENSG00000265419 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583000 ncrna:miRNA chromosome:GRCh37:6:93354459:93354526:1 gene:ENSG00000265419 gene_biotype:miRNA transcript_biotype:miRNA	chr6	 93354459	 93354526	+	ENSG00000265419	ENST00000583000	NA	NA	NA	NA	NA	inter
CUST_24258_PI429285431	5.544851	P	5.3118906	P	1.17524406913936	0	lncRNA	25809-1_{1..587}	lnc-DCT-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DCT-3:1	chr13	 94488310	 94488896	-	lnc-DCT-3	lnc-DCT-3:1	ENSG00000224394.1	GPC6-AS2	GPC6	NA	chr13:94478310-94498397	inner
CUST_46581_PI429285431	4.2629385	P	5.602988	P	0.395007102695232	0	lncRNA	50765-1_{1..684}	"gi|310123430|ref|XR_109246.1| PREDICTED: Homo sapiens uncharacterized LOC100507458, transcript variant 1 (LOC100507458), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310123430|ref|XR_109246.1| PREDICTED: Homo sapiens uncharacterized LOC100507458, transcript variant 1 (LOC100507458), misc_RNA"	Chr16	  3181669	  3182352	-	100507458	XR_109246.1	NA	NA	NA	NA	NA	inter
CUST_17449_PI429285431	1.0037619	A	1.0686324	A	0.95603112954385	0	lncRNA	19172-1_{1..1325}	lnc-DEFB108B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DEFB108B-1:1	chr11	 71595453	 71596777	+	lnc-DEFB108B-1	lnc-DEFB108B-1:1	XLOC_009200	linc-RNF121	LOC100129216	NA	chr11:71589499-71595607	inter
LNCA_21_P0008713	0.91015416	A	0.9341279	A	0.983519975938145	0	lncRNA	TCONS_00023594	NA	NA	NA	NA	XLOC_011407	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011407), lincRNA [TCONS_00023594]"	chr15:26696957-26696898	hs|15q12	Agilent_HUMAN_G3V2	TCONS_00023594	TCONS_00023594	chr15	 26696898	 26696957	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44040_PI429285431	3.627615	P	2.2600691	A	2.58031267866524	0	lncRNA	48720-1_{1..966}	"gi|300795505|ref|NR_034096.1| Homo sapiens uncharacterized LOC348751 (FONG), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300795505|ref|NR_034096.1| Homo sapiens uncharacterized LOC348751 (FONG), non-coding RNA"	Chr2	200625259	200626224	-	348751	NR_034096.1	NA	NA	NA	NA	NA	inter
CUST_14286_PI429285431	0.9029709	A	1.110379	A	0.866091827436543	0	lncRNA	15946-1_{1..2900}	lnc-SIK1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIK1-5:1	chr21	 44781365	 44784264	-	lnc-SIK1-5	lnc-SIK1-5:1	XLOC_014102	linc-U2AF1-2	NA	NA	NA	inter
CUST_10183_PI429285431	1.2142961	A	1.1034019	A	1.07989736268642	0	lncRNA	11709-1_{1..3000}	lnc-CRIPAK-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRIPAK-1:4	chr4	  1550083	  1553082	+	lnc-CRIPAK-1	lnc-CRIPAK-1:4	XLOC_003422	linc-TACC3	NA	NA	NA	inter
LNCA_21_P0009638	2.9212968	A	1.2399092	A	3.20736290431098	0	lncRNA	TCONS_00026735	NA	NA	NA	NA	XLOC_012879	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012879), lincRNA [TCONS_00026735]"	chr18:71314898-71314839	hs|18q22.3	Agilent_HUMAN_G3V2	TCONS_00026735	TCONS_00026735	chr18	 71314839	 71314898	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34546_PI429285431	1.2036942	A	1.7855748	A	0.66809232941301	0	lncRNA	36007-1_{1..1017}	n341428|AF339833|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3898|NULL|-1.0898500|-0.3539792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341428|AF339833|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3898|NULL|-1.0898500|-0.3539792	chr13	103541207	103542223	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7551_PI429285431	7.402413	P	7.641573	P	0.847238467982725	0	lncRNA	9187-1_{1..1180}	lnc-AGXT2L1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-AGXT2L1-1:5	chr4	109541464	109542643	-	lnc-AGXT2L1-1	lnc-AGXT2L1-1:5	ENSG00000234492	RP11-462C24.1	RPL34	NA	chr4:109541722-109551551	inter
CUST_41243_PI429285431	6.0153613	P	6.1480513	P	0.912129138783741	0	lncRNA	42168-1_{1..80}	ENST00000410139 ncrna:miRNA chromosome:GRCh37:10:21785491:21785570:-1 gene:ENSG00000222071 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410139 ncrna:miRNA chromosome:GRCh37:10:21785491:21785570:-1 gene:ENSG00000222071 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 21785491	 21785570	-	ENSG00000222071	ENST00000410139	NA	NA	C10orf114	NA	chr10:21783421-21786213	inter
LNCA_21_P0012020	1.8875346	A	1.5452602	A	1.26775362531995	0	lncRNA	ENST00000422238	NA	NA	NA	NA	XLOC_l2_007528	NA	ENST00000422238	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007528), lincRNA [TCONS_l2_00015467]"	chr2:122552557-122552616	hs|2q14.3	Agilent_HUMAN_G3V2	ENST00000422238	ENST00000422238	chr2	122552557	122552616	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22116_PI429285431	0.9066695	A	0.9162446	A	0.993385022363133	0	lncRNA	23721-1_{1..3000}	lnc-GUCY1A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-GUCY1A2-1:1	chr11	106544738	106547737	-	lnc-GUCY1A2-1	lnc-GUCY1A2-1:1	ENSG00000260512.1	RP13-259F12.2	GUCY1A2	NA	chr11:106557910-106560066	inner
CUST_29674_PI429285431	6.268632	P	6.436514	P	0.890148536741033	0	lncRNA	31436-1_{1..248}	n333319|AY186254|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085081|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085081|0.8460430|-0.2242677	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333319|AY186254|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085081|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085081|0.8460430|-0.2242677	chr21	 42823117	 42823364	+	NA	NA	NA	NA	MX1	NA	chr21:42813117-42831141	inner
CUST_10864_PI429285431	0.8874966	A	0.8910028	A	0.997572638174341	0	lncRNA	12402-1_{1..482}	lnc-PKN2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PKN2-2:2	chr1	 88929612	 88930093	+	lnc-PKN2-2	lnc-PKN2-2:2	XLOC_000281	linc-PKN2-1	NA	NA	NA	inter
CUST_4246_PI429285431	1.7823608	A	1.9000204	A	0.921681628837219	0	lncRNA	4203-1_{1..582}	"transcript_id ""ENST00000550909.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550909.1"" | genecode_v17"	chr12	 48225132	 48225713	+	ENSG00000257488.1	ENST00000550909.1	RP5-1057I20.2	RP5-1057I20.2-004	VDR	NA	chr12:48235320-48238498	inter
CUST_37811_PI429285431	2.4155757	A	1.8340906	A	1.49638882808505	0	lncRNA	38902-1_{1..2724}	n346324|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1874|NULL|-1.3127300|-0.3547681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n346324|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1874|NULL|-1.3127300|-0.3547681	chr7	   144940	   147663	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13230_PI429285431	0.8947926	A	0.8995298	A	0.996721808218951	0	lncRNA	14857-1_{1..298}	lnc-HRH4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HRH4-2:2	chr18	 22081177	 22081474	+	lnc-HRH4-2	lnc-HRH4-2:2	XLOC_012643	linc-PSMA8-4	NA	NA	NA	inter
LNCA_21_P0004888	3.1874123	P	3.3803017	P	0.874851830294504	0	lncRNA	TCONS_00011824	NA	NA	NA	NA	XLOC_005310	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005310), lincRNA [TCONS_00011824]"	chr6:47413631-47415205	hs|6p12.3	Agilent_HUMAN_G3V2	TCONS_00011824	TCONS_00011824	chr6	 47413631	 47415205	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012410	0.8738763	A	0.87466323	A	0.999454690424542	0	lncRNA	TCONS_l2_00018976	NA	NA	NA	NA	XLOC_l2_009979	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009979), lincRNA [TCONS_l2_00018976]"	chr3:165100663-165100722	hs|3q26.1	Agilent_HUMAN_G3V2	TCONS_l2_00018976	TCONS_l2_00018976	chr3	165100663	165100722	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41739_PI429285431	0.9015564	A	0.8901192	A	1.00795917005755	0	lncRNA	43272-1_{1..85}	ENST00000579623 ncrna:miRNA chromosome:GRCh37:11:126858354:126858438:-1 gene:ENSG00000266215 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579623 ncrna:miRNA chromosome:GRCh37:11:126858354:126858438:-1 gene:ENSG00000266215 gene_biotype:miRNA transcript_biotype:miRNA	chr11	126858354	126858438	-	ENSG00000266215	ENST00000579623	NA	NA	KIRREL3	NA	chr11:126848354-126868438	inner
CUST_19982_PI429285431	3.722342	P	4.228487	P	0.704101343249842	0	lncRNA	21635-1_{1..547}	lnc-LRRC56-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC56-1:1	chr11	   529154	   529700	+	lnc-LRRC56-1	lnc-LRRC56-1:1	ENSG00000254739.1	RP13-46H24.1	LRRC56	NA	chr11:537522-539659	inter
CUST_46555_PI429285431	0.90063	A	0.89858246	A	1.00142025418513	0	lncRNA	50740-1_{1..2286}	"gi|397139599|ref|XR_158886.1| PREDICTED: Homo sapiens uncharacterized LOC100996663 (LOC100996663), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139599|ref|XR_158886.1| PREDICTED: Homo sapiens uncharacterized LOC100996663 (LOC100996663), misc_RNA"	Chr15	 93960077	 93962362	-	100996663	XR_158886.2	NA	NA	NA	NA	NA	inter
CUST_5345_PI429285431	1.4493151	A	0.88560694	A	1.47806340643176	0	lncRNA	5283-1_{1..501}	"transcript_id ""ENST00000558382.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558382.1"" | genecode_v17"	chr15	 96897466	 96897966	+	ENSG00000259275.1	ENST00000558382.1	RP11-522B15.3	RP11-522B15.3-001	NA	NA	NA	inter
LNCA_21_P0013457	2.2527611	A	1.3178277	A	1.91180237746587	0	lncRNA	ENST00000454441	NA	NA	NA	NA	XLOC_l2_014061	NA	ENST00000454441	THC2607578	NA	"BROAD Institute lincRNA (XLOC_l2_014061), lincRNA [TCONS_l2_00027522]"	chr7:153097082-153097023	hs|7q36.2	Agilent_HUMAN_G3V2	ENST00000454441	ENST00000454441	chr7	153097023	153097082	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005553	1.8826776	A	2.6178057	A	0.600764679205316	0	lncRNA	ENST00000458087	XR_108768	XR_108768	NA	NA	XLOC_006043	NA	ENST00000458087	THC2609379	NA	"PREDICTED: Homo sapiens hypothetical LOC100506725, transcript variant 2 (LOC100506725), miscRNA [XR_108768]"	chr7:35759102-35759161	hs|7p14.2	Agilent_HUMAN_G3V2	ENST00000458087	ENST00000458087	chr7	 35759102	 35759161	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35894_PI429285431	0.99076414	A	0.8983738	A	1.06613515384933	0	lncRNA	37277-2_{3001..6000}	n344552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_100|NULL|-1.2931500|-0.3004446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n344552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_100|NULL|-1.2931500|-0.3004446	chr15	 25244369	 25247368	+	NA	NA	NA	NA	SNRPN	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr15:25231369-25375009"	NA	inter
LNCA_19_P00322183	3.8039541	P	4.1809545	P	0.770036960736462	0	lncRNA	THC2713234	NA	NA	NA	NA	XLOC_000515	NA	NA	THC2713234	NA	"BROAD Institute lincRNA (XLOC_000515), lincRNA [TCONS_00001233]"	chr1:200384539-200384598	hs|1q32.1	Agilent_HUMAN_G3V2	THC2713234	THC2713234	chr1	200384539	200384598	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47942_PI429285431	1.7945943	A	0.9148157	A	1.84009289379922	0	lncRNA	51834-1_{1..1613}	"gi|410172424|ref|XR_171775.1| PREDICTED: Homo sapiens contactin associated protein-like 3 pseudogene (LOC441402), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172424|ref|XR_171775.1| PREDICTED: Homo sapiens contactin associated protein-like 3 pseudogene (LOC441402), misc_RNA"	NA	NA	NA	NA	NA	XR_171775.1	NA	NA	NA	NA	NA	Unknown
CUST_13647_PI429285431	4.1295643	P	4.269904	P	0.907305494109113	0	lncRNA	15285-1_{1..245}	lnc-VKORC1L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VKORC1L1-1:1	chr7	 65293604	 65293848	+	lnc-VKORC1L1-1	lnc-VKORC1L1-1:1	XLOC_006132	linc-VKORC1L1	NA	NA	NA	inter
CUST_42125_PI429285431	4.686943	P	5.4716754	P	0.580459614446816	0	lncRNA	44118-1_{1..78}	ENST00000584181 ncrna:miRNA chromosome:GRCh37:3:163373092:163373169:-1 gene:ENSG00000266757 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584181 ncrna:miRNA chromosome:GRCh37:3:163373092:163373169:-1 gene:ENSG00000266757 gene_biotype:miRNA transcript_biotype:miRNA	chr3	163373092	163373169	-	ENSG00000266757	ENST00000584181	NA	NA	NA	NA	NA	inter
CUST_51708_PI429285431	11.28893	P	11.6352005	P	0.786614944124774	0	lncRNA	55265-1_{1..1235}	hg19_lincRNAsTranscripts_TCONS_l2_00011963 range=chr18:11619293-11639478 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011963 range=chr18:11619293-11639478 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 11619293	 11620527	-	NA	NA	NA	NA	AMAC1L1	NA	chr18:11609595-11610611	inter
CUST_34475_PI429285431	0.92361355	A	1.3814083	A	0.728098352561904	0	lncRNA	35943-1_{1..266}	n341351|AJ459868|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3820|NULL|-1.0697800|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341351|AJ459868|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3820|NULL|-1.0697800|-1.0000000	chr7	143652103	143652368	+	NA	NA	NA	NA	OR2F1	NA	chr7:143657020-143658108	inner
CUST_39708_PI429285431	2.0012207	A	0.8901911	A	2.15999743621667	0	lncRNA	40644-1_{1..914}	n405607|NR_002767|lncRNA|Homosapiens||RefGeneNoncode|NR_002767||2.7141000|-0.4250075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405607|NR_002767|lncRNA|Homosapiens||RefGeneNoncode|NR_002767||2.7141000|-0.4250075	chr6	 88410019	 88410932	-	NA	NA	NA	NA	AKIRIN2	NA	chr6:88400019-88411985	inner
CUST_31619_PI429285431	1.8337047	A	0.89499843	A	1.91680857862971	0	lncRNA	33375-1_{1..1366}	n338138|BC043379|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|526|NULL|-1.0958700|-0.2903631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338138|BC043379|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|526|NULL|-1.0958700|-0.2903631	chr15	 92691980	 92693345	-	NA	NA	NA	NA	SLCO3A1	NA	chr15:92681980-92715665	inner
CUST_44490_PI429285431	6.716746	P	6.3652196	P	1.27590985139823	0	lncRNA	49092-1_{1..3000}	"gi|325910877|ref|NR_037947.1| Homo sapiens NOP2/Sun RNA methyltransferase family, member 2 (NSUN2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|325910877|ref|NR_037947.1| Homo sapiens NOP2/Sun RNA methyltransferase family, member 2 (NSUN2), transcript variant 3, non-coding RNA"	Chr5	  6599352	  6602351	-	54888	NR_037947.1	NA	NA	NA	NA	NA	inter
CUST_23702_PI429285431	1.1083088	A	1.3308059	A	0.857080667067207	0	lncRNA	25267-1_{1..1928}	lnc-CILP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CILP2-1:1	chr19	 19718949	 19720876	+	lnc-CILP2-1	lnc-CILP2-1:1	ENSG00000259242.1	AC002306.1	LPAR2	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.56;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90chr19:19708949-19729991"	NA	inter
CUST_31532_PI429285431	0.90448517	A	0.91651565	A	0.991695778835231	0	lncRNA	33289-1_{1..1737}	n338018|AK054758|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|405|NULL|1.1955700|-0.1707982	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338018|AK054758|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|405|NULL|1.1955700|-0.1707982	chr22	 30671203	 30672939	-	NA	NA	NA	NA	GATSL3	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.31;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90chr22:30681107-30682940"	NA	inter
LNCA_21_P0001524	0.90994126	A	0.9310628	A	0.985466312725961	0	lncRNA	TCONS_00001545	NA	NA	NA	NA	XLOC_000888	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000888), lincRNA [TCONS_00001545]"	chr1:84465295-84465236	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_00001545	TCONS_00001545	chr1	 84465236	 84465295	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4546_PI429285431	1.4552325	A	0.9090967	A	1.46016944904125	0	lncRNA	4494-1_{1..458}	"transcript_id ""ENST00000422609.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422609.1"" | genecode_v17"	chr13	 19246967	 19247424	+	ENSG00000231914.1	ENST00000422609.1	LINC00387	LINC00387-001	NA	NA	NA	inter
CUST_1118_PI429285431	1.9850942	A	1.1889575	A	1.73644498115987	0	lncRNA	1107-1_{1..674}	"transcript_id ""ENST00000414195.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414195.2"" | genecode_v17"	chr2	145780795	145781468	+	ENSG00000226674.3	ENST00000414195.2	AC074093.1	AC074093.1-010	NA	NA	NA	inter
CUST_31048_PI429285431	3.4768567	P	3.2254694	P	1.19035121022612	0	lncRNA	32838-1_{1..354}	n337270|BC127894|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389512|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389512|0.9397290|-0.0832382	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337270|BC127894|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389512|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389512|0.9397290|-0.0832382	chr1	 11710328	 11710681	-	NA	NA	NA	NA	FBXO2	NA	chr1:11708418-11714888	inner
CUST_24144_PI429285431	0.9036977	A	0.9088096	A	0.996462971004082	0	lncRNA	25696-1_{1..739}	lnc-RP11-93B14.6.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-93B14.6.1-5:1	chr20	 61366578	 61367316	-	lnc-RP11-93B14.6.1-5	lnc-RP11-93B14.6.1-5:1	ENSG00000223669.1	RP11-93B14.4	NTSR1	NA	chr20:61356578-61376699	inner
CUST_12585_PI429285431	2.951079	A	3.0894637	A	0.908535819688888	0	lncRNA	14196-1_{1..310}	lnc-ILKAP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ILKAP-1:1	chr2	238842786	238843095	-	lnc-ILKAP-1	lnc-ILKAP-1:1	XLOC_002534	linc-RAB17-2	NA	NA	NA	inter
CUST_47312_PI429285431	9.2394285	P	8.689602	P	1.4639096340702	0	lncRNA	51373-1_{1..2593}	"gi|383872530|ref|NR_047553.1| Homo sapiens ubiquitin-conjugating enzyme E2 variant 1 (UBE2V1), transcript variant 12, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|383872530|ref|NR_047553.1| Homo sapiens ubiquitin-conjugating enzyme E2 variant 1 (UBE2V1), transcript variant 12, non-coding RNA"	Chr20	 48697661	 48700253	-	7335	NR_047553.1	NA	NA	NA	NA	NA	inter
CUST_23735_PI429285431	1.1742343	A	1.0808251	A	1.0668883456781	0	lncRNA	25298-1_{1..371}	lnc-AP001496.1-10:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP001496.1-10:5	chr18	  5908950	  5909320	+	lnc-AP001496.1-10	lnc-AP001496.1-10:5	ENSG00000264449.1	RP11-945C19.4	NA	NA	NA	inter
CUST_199_PI429201921	11.36475	P	11.319468	P	1.03188485954861	0	lncRNA	160-2_{3001..5223}	TC09001951.hg.1	TCONS_l2_00028752-XLOC_l2_014804 // Broad TUCP // linc-ANKRD20A1-20 chr9:+:45944183-45949407 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:+:45944183-45949407	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00028752-XLOC_l2_014804	linc-ANKRD20A1-20	chr9	 45944183	 45949407	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007086	1.2410891	A	0.92974615	A	1.24086223400815	0	lncRNA	THC2688731	NA	NA	NA	NA	XLOC_008653	NA	NA	THC2688731	NA	"BROAD Institute lincRNA (XLOC_008653), lincRNA [TCONS_00018847]"	NA	NA	Agilent_HUMAN_G3V2	THC2688731	THC2688731	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007025	1.0586278	A	0.9278808	A	1.09486045240007	0	lncRNA	TCONS_00018619	NA	NA	NA	NA	XLOC_008971	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008971), lincRNA [TCONS_00018619]"	chr10:122953046-122952987	hs|10q26.12	Agilent_HUMAN_G3V2	TCONS_00018619	TCONS_00018619	chr10	122952987	122953046	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32638_PI429285431	1.7966976	A	1.2793492	A	1.43132213181792	0	lncRNA	34296-1_{1..3000}	n339262|AL133111|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1694|NULL|-0.7685540|-0.2684131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339262|AL133111|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1694|NULL|-0.7685540|-0.2684131	chr3	 15295690	 15298689	+	NA	NA	NA	NA	SH3BP5	"hg19_refFlat_SH3BP5:range=chr3:15297593-153739155'pad=0,hg19_refFlat_SH3BP5:range=chr3:15297593-153739155'pad=0 3'pad=0 strand=- repeatMasking=none,-96.30;hg19_refFlat_SH3BP5:range=chr3:15297593-153112435'pad=0,hg19_refFlat_SH3BP5:range=chr3:15297593-153112435'pad=0 3'pad=0 strand=- repeatMasking=none,-97.30chr3:15296357-15316000"	NA	inner
CUST_14801_PI429285431	4.509676	P	4.7167087	P	0.866317220306977	0	lncRNA	16462-1_{1..620}	lnc-C11orf89-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C11orf89-1:5	chr11	  2006673	  2007292	-	lnc-C11orf89-1	lnc-C11orf89-1:5	XLOC_009356	linc-CTSD-3	NA	NA	NA	inter
LNCA_21_P0014705	0.9017547	A	1.0910454	A	0.87703680986457	0	lncRNA	XR_112228	XR_112228	XR_112228	NA	Hs.704263	LOC100507807	uncharacterized LOC100507807	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507807 (LOC100507807), miscRNA [XR_112228]"	chrUn_gl000242:12820-12761	NA	Agilent_HUMAN_G3V2	XR_112228	XR_112228	chrUn_gl000242	    12761	    12820	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014851	6.525009	P	6.5920906	P	0.954567021528925	0	lncRNA	XR_132723	XR_132723	XR_132723	NA	NA	LOC100652779	uncharacterized LOC100652779	NA	THC2589137	NA	"PREDICTED: Homo sapiens hypothetical LOC100652779 (LOC100652779), miscRNA [XR_132723]"	chr5:179136954-179136895	hs|5q35.3	Agilent_HUMAN_G3V2	XR_132723	XR_132723	chr5	179136895	179136954	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28335_PI429285431	1.5425595	A	1.2194797	A	1.25099827484854	0	lncRNA	29980-1_{1..580}	n325640|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045721|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045721|-1.1930200|-0.4281985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325640|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045721|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045721|-1.1930200|-0.4281985	chr13	105157825	105158404	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.50"	NA	inter
CUST_34817_PI429285431	0.91772556	A	0.9651848	A	0.967638958149106	0	lncRNA	36249-2_{3001..4337}	n341724|AK096349|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4197|NULL|1.0700200|-0.2927521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341724|AK096349|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4197|NULL|1.0700200|-0.2927521	chr9	 96303702	 96305038	+	NA	NA	NA	NA	FAM120A	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr9:96290702-96315039"	NA	inner
CUST_8760_PI429285431	1.677816	A	1.4507612	A	1.17044309928575	0	lncRNA	10303-1_{1..1711}	lnc-JMJD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JMJD4-1:1	chr1	227933476	227935186	-	lnc-JMJD4-1	lnc-JMJD4-1:1	ENSG00000251190	ENST00000510939	SNAP47	NA	chr1:227923476-227944895	inner
CUST_19191_PI429285431	0.916094	A	0.9325946	A	0.988627813408321	0	lncRNA	20861-1_{1..599}	lnc-ERAL1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ERAL1-5:1	chr17	 27271814	 27272412	+	lnc-ERAL1-5	lnc-ERAL1-5:1	ENSG00000265908.1	RP11-20B24.6	PHF12	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-18.80;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70chr17:27261814-27278508"	NA	inner
CUST_14628_PI429285431	1.5759082	A	0.89699054	A	1.60093824717367	0	lncRNA	16299-1_{1..396}	lnc-PKN2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PKN2-1:2	chr1	 89500940	 89501335	+	lnc-PKN2-1	lnc-PKN2-1:2	XLOC_000282	linc-GBP6-5	NA	NA	NA	inter
LNCA_21_P0009808	3.8294582	P	3.4621325	P	1.28995943649569	0	lncRNA	TCONS_00027830	NA	NA	NA	NA	XLOC_013429	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013429), lincRNA [TCONS_00027830]"	chr19:58919513-58918648	hs|19q13.43	Agilent_HUMAN_G3V2	TCONS_00027830	TCONS_00027830	chr19	 58918648	 58919513	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26780_PI429285431	1.5721477	A	1.7663163	A	0.874076465832014	0	lncRNA	28280-1_{1..1135}	n323833|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057387|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057387|-0.1932190|-0.4037870	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323833|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057387|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057387|-0.1932190|-0.4037870	chrX	 84352367	 84353501	+	NA	NA	NA	NA	APOOL	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10chrX:84342367-84348324"	NA	inner
LNCA_21_P0009880	0.8828851	A	0.8942311	A	0.992166395950227	0	lncRNA	ENST00000418690	NA	NA	NA	NA	XLOC_013650	NA	ENST00000418690	NA	NA	"BROAD Institute lincRNA (XLOC_013650), lincRNA [TCONS_00028002]"	chr20:10734007-10733948	hs|20p12.2	Agilent_HUMAN_G3V2	ENST00000418690	ENST00000418690	chr20	 10733948	 10734007	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004349	2.621308	A	3.7033486	P	0.472360227256071	0	lncRNA	TCONS_00010231	NA	NA	NA	NA	XLOC_004699	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004699), lincRNA [TCONS_00010231]"	chr5:1002268-1002209	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00010231	TCONS_00010231	chr5	  1002209	  1002268	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13197_PI429285431	0.90210456	A	1.6867409	A	0.580498264892921	0	lncRNA	14825-1_{1..932}	lnc-CFL1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CFL1-1:2	chr11	 65585461	 65586392	-	lnc-CFL1-1	lnc-CFL1-1:2	XLOC_009475	linc-DKFZp761E198	NA	NA	NA	inter
CUST_9285_PI429285431	6.1441765	P	6.54974	P	0.75494136382049	0	lncRNA	10791-1_{1..691}	lnc-JPH3-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JPH3-3:7	chr16	 87549122	 87549812	+	lnc-JPH3-3	lnc-JPH3-3:7	XLOC_011821	linc-JPH3-2	NA	NA	NA	inter
LNCA_21_P0008506	0.87608206	A	0.8810003	A	0.996596740072433	0	lncRNA	TCONS_00022939	NA	NA	NA	NA	XLOC_010778	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010778), lincRNA [TCONS_00022939]"	chr14:27281559-27281618	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022939	TCONS_00022939	chr14	 27281559	 27281618	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4345_PI429285431	0.88774526	A	0.8856786	A	1.00143352606976	0	lncRNA	4300-1_{1..789}	"transcript_id ""ENST00000550302.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550302.1"" | genecode_v17"	chr12	 81676465	 81677253	+	ENSG00000257467.1	ENST00000550302.1	RP11-121G22.3	RP11-121G22.3-005	PPFIA2	NA	chr12:81666465-81716201	inner
CUST_9857_PI429285431	1.7791877	A	2.0958316	A	0.802935552608979	0	lncRNA	11377-1_{1..808}	lnc-KLHL25-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL25-1:1	chr15	 86299844	 86300651	-	lnc-KLHL25-1	lnc-KLHL25-1:1	XLOC_011563	linc-SEC11A-1	AKAP13	NA	chr15:86289844-86292586	inter
CUST_41569_PI429285431	0.89156675	A	0.90016323	A	0.994059091528491	0	lncRNA	42886-1_{1..87}	ENST00000384824 ncrna:miRNA chromosome:GRCh37:19:54185413:54185499:1 gene:ENSG00000207555 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384824 ncrna:miRNA chromosome:GRCh37:19:54185413:54185499:1 gene:ENSG00000207555 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54185413	 54185499	+	ENSG00000207555	ENST00000384824	NA	NA	NA	NA	NA	inter
CUST_27515_PI429285431	0.8926758	A	1.2206451	A	0.796657048663238	0	lncRNA	29085-1_{1..637}	n324693|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320636|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320636|-1.2063400|-0.1544848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324693|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320636|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320636|-1.2063400|-0.1544848	chr22	 25947309	 25947945	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13502_PI429285431	0.9025138	A	0.9104488	A	0.994514975105156	0	lncRNA	15142-1_{1..1447}	lnc-AL078585.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL078585.1-2:3	chr6	163761441	163762887	-	lnc-AL078585.1-2	lnc-AL078585.1-2:3	XLOC_005909	linc-PARK2-6	NA	NA	NA	inter
CUST_12072_PI429285431	6.798519	P	7.2413425	P	0.73569337250085	0	lncRNA	13663-1_{1..740}	lnc-CTH-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTH-2:1	chr1	 71304646	 71305385	+	lnc-CTH-2	lnc-CTH-2:1	XLOC_000247	linc-FPGT-11	NA	NA	NA	inter
CUST_21191_PI429285431	4.0842633	P	3.9028692	P	1.13397913876461	0	lncRNA	22816-1_{1..604}	lnc-RABEPK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RABEPK-1:1	chr9	128048475	128049078	+	lnc-RABEPK-1	lnc-RABEPK-1:1	ENSG00000227452.1	RP11-65N13.7	GAPVD1	NA	chr9:128038475-128058998	inner
CUST_38271_PI429285431	7.8030457	P	7.7673674	P	1.02503864370178	0	lncRNA	39326-1_{1..1305}	n381844|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001rab.1||-0.1756270|-0.2222837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381844|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001rab.1||-0.1756270|-0.2222837	chr12	 12202797	 12204101	+	NA	NA	NA	NA	NA	"hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-17.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90"	NA	inter
LNCA_21_P0008569	3.8672361	P	2.691164	A	2.25960735225606	0	lncRNA	TCONS_00023261	NA	NA	NA	NA	XLOC_011240	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011240), lincRNA [TCONS_00023261]"	chr15:48622900-48622959	hs|15q21.1	Agilent_HUMAN_G3V2	TCONS_00023261	TCONS_00023261	chr15	 48622900	 48622959	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7372_PI429285431	3.7448862	P	4.830343	P	0.471243034825813	0	lncRNA	9018-1_{1..894}	lnc-CRYBA4-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CRYBA4-1:13	chr22	 27061421	 27062314	+	lnc-CRYBA4-1	lnc-CRYBA4-1:13	ENSG00000225783	MIAT	NA	NA	NA	inter
CUST_45411_PI429285431	2.1549544	A	2.0913498	A	1.04507363720669	0	lncRNA	49837-1_{1..3000}	"gi|308044583|ref|NR_036651.1| Homo sapiens hydroxysteroid dehydrogenase like 2 (HSDL2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|308044583|ref|NR_036651.1| Homo sapiens hydroxysteroid dehydrogenase like 2 (HSDL2), transcript variant 3, non-coding RNA"	Chr9	115142189	115145188	+	84263	NR_036651.1	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30"	NA	inter
CUST_36487_PI429285431	0.894049	A	1.4912899	A	0.661016917308705	0	lncRNA	37689-1_{1..2048}	n344989|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_538|NULL|-1.3891500|-0.2936936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344989|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_538|NULL|-1.3891500|-0.2936936	chr8	  6556625	  6558672	-	NA	NA	NA	NA	AGPAT5	NA	chr8:6565878-6574000	inter
CUST_14939_PI429285431	4.417822	P	4.3910155	P	1.01875454803895	0	lncRNA	16603-1_{1..590}	lnc-NCOA3-9:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCOA3-9:4	chr20	 46700066	 46700655	+	lnc-NCOA3-9	lnc-NCOA3-9:4	XLOC_013547	linc-ARFGEF2-8	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70"	NA	inter
CUST_6647_PI429285431	0.8896399	A	3.1785486	P	0.204630244877444	0	lncRNA	6593-1_{1..280}	"transcript_id ""ENST00000455132.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455132.1"" | genecode_v17"	chr20	 12224543	 12224822	-	ENSG00000235292.1	ENST00000455132.1	RP4-796I8.1	RP4-796I8.1-001	NA	NA	NA	inter
CUST_33588_PI429285431	7.0608544	P	5.287981	P	3.41733907058292	0	lncRNA	35153-1_{1..2267}	n340342|AK022877|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2803|NULL|-1.2063500|-0.3143254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340342|AK022877|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2803|NULL|-1.2063500|-0.3143254	chr5	  9035143	  9037409	-	NA	NA	NA	NA	SEMA5A	NA	chr5:9035138-9047411	inner
CUST_46425_PI429285431	1.5883114	A	1.398076	A	1.14094986587266	0	lncRNA	50637-1_{1..1156}	"gi|384229042|ref|NR_047567.1| Homo sapiens golgin A6 family-like 7, pseudogene (GOLGA6L7P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384229042|ref|NR_047567.1| Homo sapiens golgin A6 family-like 7, pseudogene (GOLGA6L7P), non-coding RNA"	Chr15	 29090107	 29091262	-	728310	NR_047567.1	NA	NA	NA	NA	NA	inter
CUST_28300_PI429285431	0.8953981	A	0.8921435	A	1.00225846330872	0	lncRNA	29943-1_{1..625}	n325603|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000144426|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000144426|-1.1643200|-0.3214572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325603|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000144426|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000144426|-1.1643200|-0.3214572	chr14	100497116	100497740	+	NA	NA	NA	NA	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-64.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20"	NA	inter
CUST_20178_PI429285431	0.87536705	A	0.8820136	A	0.995403558725336	0	lncRNA	21822-1_{1..477}	lnc-C10orf11-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf11-3:1	chr10	 78708902	 78709378	+	lnc-C10orf11-3	lnc-C10orf11-3:1	ENSG00000227323.1	RP11-443A13.3	KCNMA1	"hg19_refFlat_KCNMA1:range=chr10:78647024-793974005'pad=0,hg19_refFlat_KCNMA1:range=chr10:78647024-793974005'pad=0 3'pad=0 strand=- repeatMasking=none,-95.70;hg19_refFlat_KCNMA1:range=chr10:78637627-793974005'pad=0,hg19_refFlat_KCNMA1:range=chr10:78637627-793974005'pad=0 3'pad=0 strand=- repeatMasking=none,-95.70chr10:78698902-78719221"	NA	inner
CUST_47103_PI429285431	0.8932307	A	1.6584283	A	0.588372776093558	0	lncRNA	51184-1_{1..619}	"gi|254826719|ref|NR_027620.2| Homo sapiens secretoglobin, family 1B, member 2, pseudogene (SCGB1B2P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|254826719|ref|NR_027620.2| Homo sapiens secretoglobin, family 1B, member 2, pseudogene (SCGB1B2P), non-coding RNA"	Chr19	 35067638	 35068256	-	643719	NR_027620.2	NA	NA	NA	NA	NA	inter
CUST_31942_PI429285431	0.8860151	A	2.1066294	A	0.429099968413309	0	lncRNA	33669-1_{1..952}	n338499|AF469206|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|896|NULL|-0.5158330|-0.1550636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338499|AF469206|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|896|NULL|-0.5158330|-0.1550636	chr14	102018559	102019510	-	NA	NA	NA	NA	DIO3	NA	chr14:102027688-102029789	inter
CUST_6609_PI429285431	1.1406245	A	1.1577364	A	0.988208999905935	0	lncRNA	6557-1_{1..1050}	"transcript_id ""ENST00000597105.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597105.1"" | genecode_v17"	chr19	 57352617	 57353666	+	ENSG00000268654.1	ENST00000597105.1	MIMT1	MIMT1-002	ZIM2	NA	chr19:57342617-57352097	inter
LNCA_21_P0003784	1.8152331	A	0.93234175	A	1.84406735306976	0	lncRNA	ENST00000508847	NA	NA	NA	NA	XLOC_004122	NA	ENST00000508847	NA	NA	"BROAD Institute lincRNA (XLOC_004122), lincRNA [TCONS_00009146]"	chr4:152328759-152328703	hs|4q31.3	Agilent_HUMAN_G3V2	ENST00000508847	ENST00000508847	chr4	152328703	152328759	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013321	0.9114568	A	0.94171965	A	0.979241869598118	0	lncRNA	TCONS_l2_00026649	NA	NA	NA	NA	XLOC_l2_013873	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013873), lincRNA [TCONS_l2_00026649]"	chr7:65874077-65872323	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00026649	TCONS_l2_00026649	chr7	 65872323	 65874077	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003176	0.91184837	A	1.0984975	A	0.878644132507196	0	lncRNA	TCONS_00007265	NA	NA	NA	NA	XLOC_003250	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003250), lincRNA [TCONS_00007265]"	chr3:129995518-129995459	hs|3q22.1	Agilent_HUMAN_G3V2	TCONS_00007265	TCONS_00007265	chr3	129995459	129995518	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003971	0.9113593	A	0.94271195	A	0.978502437637758	0	lncRNA	ENST00000416930	NA	NA	NA	NA	XLOC_004293	NA	ENST00000416930	NA	NA	"BROAD Institute lincRNA (XLOC_004293), lincRNA [TCONS_00009352]"	chr5:10482362-10482421	hs|5p15.2	Agilent_HUMAN_G3V2	ENST00000416930	ENST00000416930	chr5	 10482362	 10482421	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2572_PI429285431	0.91783184	A	0.9283669	A	0.992724250220397	0	lncRNA	2560-1_{1..835}	"transcript_id ""ENST00000420766.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420766.1"" | genecode_v17"	chr6	 84693447	 84694281	+	ENSG00000228679.1	ENST00000420766.1	RP4-676J13.2	RP4-676J13.2-001	NA	NA	NA	inter
CUST_48243_PI429285431	0.9160258	A	0.95109	A	0.975988328281434	0	lncRNA	52105-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00001903 range=chr1:246933184-246940597 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001903 range=chr1:246933184-246940597 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	246936184	246939183	-	NA	NA	NA	NA	LOC100130097	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30chr1:246935180-246948062"	NA	inter
CUST_404_PI429285431	5.785101	P	5.873379	P	0.940644832571786	0	lncRNA	396-1_{1..1114}	"transcript_id ""ENST00000424068.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000424068.1"" | genecode_v17"	chr1	143356625	143357738	-	ENSG00000185044.9	ENST00000424068.1	RP11-435B5.4	RP11-435B5.4-001	NA	NA	NA	inter
LNCA_21_P0004471	4.5953026	P	5.1546965	P	0.678587189526795	0	lncRNA	TCONS_00010558	NA	NA	NA	NA	XLOC_005085	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005085), lincRNA [TCONS_00010558]"	chr5:172664560-172664501	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00010558	TCONS_00010558	chr5	172664501	172664560	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12006_PI429285431	1.4571117	A	1.270924	A	1.13775324417966	0	lncRNA	13587-1_{1..276}	lnc-C12orf68-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C12orf68-1:1	chr12	 48619696	 48619971	+	lnc-C12orf68-1	lnc-C12orf68-1:1	XLOC_009734	linc-H1FNT	NA	NA	NA	inter
CUST_14653_PI429285431	0.90426344	A	0.9149994	A	0.992586019748506	0	lncRNA	16322-1_{1..700}	lnc-AC092329.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092329.1-2:1	chr19	 23493350	 23494049	-	lnc-AC092329.1-2	lnc-AC092329.1-2:1	XLOC_013275	linc-ZNF99-5	NA	NA	NA	inter
CUST_17456_PI429285431	0.8823724	A	0.8941312	A	0.991882546843249	0	lncRNA	19181-1_{1..1318}	lnc-EFNB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFNB2-1:1	chr13	107125257	107126574	-	lnc-EFNB2-1	lnc-EFNB2-1:1	XLOC_010715	linc-SLC10A2-2	NA	NA	NA	inter
LNCA_21_P0008588	0.895567	A	0.9127297	A	0.988174203825026	0	lncRNA	TCONS_00023305	NA	NA	NA	NA	XLOC_011174	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011174), lincRNA [TCONS_00023305]"	chr15:24471013-24519967	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023305	TCONS_00023305	chr15	 24471013	 24519967	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42099_PI429285431	6.587077	P	6.9609666	P	0.771699138349504	0	lncRNA	44051-1_{1..81}	ENST00000578142 ncrna:miRNA chromosome:GRCh37:X:29592395:29592475:1 gene:ENSG00000264090 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578142 ncrna:miRNA chromosome:GRCh37:X:29592395:29592475:1 gene:ENSG00000264090 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 29592395	 29592475	+	ENSG00000264090	ENST00000578142	NA	NA	IL1RAPL1	NA	chrX:29582395-29602475	inner
CUST_3931_PI429285431	0.9015371	A	0.90311956	A	0.998903723663092	0	lncRNA	3901-1_{1..628}	"transcript_id ""ENST00000530039.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000530039.1"" | genecode_v17"	chr11	 44740942	 44741569	-	ENSG00000255032.1	ENST00000530039.1	RP11-45A12.2	RP11-45A12.2-001	NA	NA	NA	inter
CUST_20272_PI429285431	0.9041722	A	1.1627717	A	0.835898976823764	0	lncRNA	21915-1_{1..801}	lnc-ALKBH4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALKBH4-2:1	chr7	101797645	101798445	-	lnc-ALKBH4-2	lnc-ALKBH4-2:1	ENSG00000259263.1	CTA-305I2.1	CUX1	NA	chr7:101787645-101807743	inner
CUST_16942_PI429285431	1.6815733	A	3.0332475	A	0.391837071011908	0	lncRNA	18655-1_{1..623}	lnc-SNX18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNX18-1:1	chr5	 53941898	 53942520	+	lnc-SNX18-1	lnc-SNX18-1:1	XLOC_004384	linc-GZMK	NA	NA	NA	inter
CUST_36364_PI429285431	1.2292877	A	0.95893884	A	1.20609944093604	0	lncRNA	37585-1_{1..1995}	n344882|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_431|NULL|-1.4043300|-0.3316782	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344882|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_431|NULL|-1.4043300|-0.3316782	chr6	  2259532	  2261526	-	NA	NA	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.06;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90"	NA	inter
LNCA_21_P0010115	4.6810603	P	4.461174	P	1.16464179645969	0	lncRNA	TCONS_00028641	NA	NA	NA	NA	XLOC_013690	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013690), lincRNA [TCONS_00028641]"	chr20:23168531-23168472	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028641	TCONS_00028641	chr20	 23168472	 23168531	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25658_PI429285431	8.958303	P	8.745859	P	1.15864933417632	0	lncRNA	27187-1_{1..2926}	lnc-C16orf42-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf42-1:2	chr16	  1372489	  1375414	-	lnc-C16orf42-1	lnc-C16orf42-1:2	ENSG00000261505.1	LA16c-358B7.3	UBE2I	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-58.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_UBE2I:range=chr16:1364032-13747945'pad=0,hg19_refFlat_UBE2I:range=chr16:1364032-13747945'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20chr16:1362489-1375390"	NA	inner
CUST_47426_PI429285431	0.89448434	A	1.203443	A	0.807224204944378	0	lncRNA	51463-1_{1..3000}	"gi|336455055|ref|NR_038876.1| Homo sapiens uncharacterized LOC100129027 (LOC100129027), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336455055|ref|NR_038876.1| Homo sapiens uncharacterized LOC100129027 (LOC100129027), non-coding RNA"	Chr21	 47247755	 47250754	-	100129027	NR_038876.1	NA	NA	NA	NA	NA	inter
CUST_25206_PI429285431	0.8825595	A	0.8815977	A	1.0006668912314	0	lncRNA	26737-1_{1..364}	lnc-SNRPD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SNRPD3-1:1	chr22	 24995155	 24995518	+	lnc-SNRPD3-1	lnc-SNRPD3-1:1	ENSG00000230947.2	AP000356.2	C22orf36	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-17.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50chr22:24985155-24989035"	NA	inner
CUST_11029_PI429285431	1.9077853	A	2.4130366	A	0.704537644958736	0	lncRNA	12575-1_{1..740}	lnc-AP001496.1-8:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AP001496.1-8:4	chr18	  5793586	  5794325	+	lnc-AP001496.1-8	lnc-AP001496.1-8:4	XLOC_012616	linc-ARHGAP28-4	NA	NA	NA	inter
LNCA_21_P0012698	1.6195059	A	0.87668854	A	1.67344062039647	0	lncRNA	TCONS_l2_00021455	NA	NA	NA	NA	XLOC_l2_011399	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011399), lincRNA [TCONS_l2_00021455]"	chr4:185545567-185545508	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_l2_00021455	TCONS_l2_00021455	chr4	185545508	185545567	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24123_PI429285431	0.88791126	A	0.9192485	A	0.97851288946761	0	lncRNA	25673-1_{1..911}	lnc-FNDC9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FNDC9-2:1	chr5	156693395	156694305	-	lnc-FNDC9-2	lnc-FNDC9-2:1	ENSG00000253653.1	CTC-248O19.1	CYFIP2	NA	chr5:156693091-156703635	inner
CUST_33693_PI429285431	9.5862055	P	9.530558	P	1.03932546120588	0	lncRNA	35254-1_{1..2916}	n340469|AK095567|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2930|NULL|-0.7261130|-0.1872536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340469|AK095567|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2930|NULL|-0.7261130|-0.1872536	chr17	  4690327	  4693242	-	NA	NA	NA	NA	TM4SF5	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_GLTPD2:range=chr17:4692307-46935915'pad=0,hg19_refFlat_GLTPD2:range=chr17:4692307-46935915'pad=0 3'pad=0 strand=+ repeatMasking=none,-111.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-55.50chr17:4680327-4686506"	NA	inner
CUST_40311_PI429285431	10.4476	P	9.351305	P	2.13804912263039	0	lncRNA	41114-1_{1..2097}	n408344|NR_029415|lncRNA|Homosapiens||RefGeneNoncode|NR_029415||8.3847400|-0.2026752	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408344|NR_029415|lncRNA|Homosapiens||RefGeneNoncode|NR_029415||8.3847400|-0.2026752	chr12	 57624110	 57626206	+	NA	NA	NA	NA	STAC3	NA	chr12:57637242-57638718	inner
LNCA_21_P0001072	1.4808381	A	1.5744698	A	0.937160660433438	0	lncRNA	TCONS_00000416	NA	NA	NA	NA	XLOC_000610	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000610), lincRNA [TCONS_00000416]"	chr1:231466938-231466997	hs|1q42.2	Agilent_HUMAN_G3V2	TCONS_00000416	TCONS_00000416	chr1	231466938	231466997	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45097_PI429285431	4.3240666	P	3.706174	P	1.53463184760409	0	lncRNA	49581-1_{1..2579}	"gi|211971086|ref|NR_015421.1| Homo sapiens family with sequence similarity 115, member C pseudogene (LOC154761), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|211971086|ref|NR_015421.1| Homo sapiens family with sequence similarity 115, member C pseudogene (LOC154761), non-coding RNA"	NA	NA	NA	NA	NA	NR_015421.1	NA	NA	NA	"hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.60;hg19_refFlat_FAM115C:range=chr7:143400088-1434218235'pad=0,hg19_refFlat_FAM115C:range=chr7:143400088-1434218235'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.60"	NA	Unknown
CUST_8939_PI429285431	10.152848	P	9.999949	P	1.11180131995554	0	lncRNA	10474-1_{1..954}	lnc-RALGAPB-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RALGAPB-1:5	chr20	 37079176	 37080129	+	lnc-RALGAPB-1	lnc-RALGAPB-1:5	ENSG00000174365	SNHG11	NA	NA	NA	inter
LNCA_21_P0002310	0.8753778	A	1.2599165	A	0.766023894609272	0	lncRNA	TCONS_00003928	NA	NA	NA	NA	XLOC_001740	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001740), lincRNA [TCONS_00003928]"	chr2:166841219-166841278	hs|2q24.3	Agilent_HUMAN_G3V2	TCONS_00003928	TCONS_00003928	chr2	166841219	166841278	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009690	4.1113048	P	5.058004	P	0.518818129897685	0	lncRNA	TCONS_00026930	NA	NA	NA	NA	XLOC_012991	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012991), lincRNA [TCONS_00026930]"	chr19:18316296-18316355	hs|19p13.11	Agilent_HUMAN_G3V2	TCONS_00026930	TCONS_00026930	chr19	 18316296	 18316355	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_627_PI429285431	1.3193425	A	1.3404423	A	0.985481162849135	0	lncRNA	619-1_{1..1010}	"transcript_id ""ENST00000586311.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586311.1"" | genecode_v17"	chr2	   306225	   307234	-	ENSG00000235779.2	ENST00000586311.1	AC079779.5	AC079779.5-012	NA	NA	NA	inter
CUST_915_PI429285431	8.072846	P	8.020835	P	1.03670900550075	0	lncRNA	905-1_{1..218}	"transcript_id ""ENST00000432410.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432410.1"" | genecode_v17"	chr2	 66924290	 66924507	-	ENSG00000237179.1	ENST00000432410.1	AC007392.4	AC007392.4-003	NA	NA	NA	inter
CUST_12566_PI429285431	1.5441737	A	0.87555724	A	1.58954786494673	0	lncRNA	14175-1_{1..2530}	lnc-NR1I2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR1I2-1:5	chr3	119817561	119820090	+	lnc-NR1I2-1	lnc-NR1I2-1:5	XLOC_002779	linc-NDUFB4-5	GSK3B	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60chr3:119807561-119813264"	NA	inter
CUST_17726_PI429285431	2.4982796	A	2.407362	A	1.06504737112661	0	lncRNA	19457-1_{1..2395}	lnc-MGAT1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MGAT1-2:5	chr5	180256937	180259331	-	lnc-MGAT1-2	lnc-MGAT1-2:5	XLOC_005110	linc-MGAT1-2	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10"	NA	inter
LNCA_21_P0005489	1.0443083	A	0.87509185	A	1.12444761391908	0	lncRNA	TCONS_00013776	NA	NA	NA	NA	XLOC_006409	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006409), lincRNA [TCONS_00013776]"	chr7:35654305-35654246	hs|7p14.2	Agilent_HUMAN_G3V2	TCONS_00013776	TCONS_00013776	chr7	 35654246	 35654305	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8127_PI429285431	0.9177232	A	2.181295	A	0.416511490048268	0	lncRNA	9731-1_{1..849}	lnc-SNURFL-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SNURFL-1:2	chrX	137798053	137798901	+	lnc-SNURFL-1	lnc-SNURFL-1:2	ENSG00000226031	RP1-260J9.2	FGF13	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40chrX:137788053-137808779"	NA	inner
CUST_48172_PI429285431	5.19022	P	4.7837	P	1.32548468406096	0	lncRNA	52037-1_{1..651}	"gi|410169961|ref|XR_172436.1| PREDICTED: Homo sapiens uncharacterized LOC101060862, transcript variant 1 (LOC101060862), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410169961|ref|XR_172436.1| PREDICTED: Homo sapiens uncharacterized LOC101060862, transcript variant 1 (LOC101060862), misc_RNA"	NA	NA	NA	NA	NA	XR_172436.1	NA	NA	NA	NA	NA	Unknown
CUST_33041_PI429285431	2.0460036	A	2.6656623	A	0.650824875888497	0	lncRNA	34654-2_{3001..3591}	n339730|BC036509|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2175|NULL|-0.0770275|-0.2782853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339730|BC036509|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2175|NULL|-0.0770275|-0.2782853	chr3	186572674	186573264	-	NA	NA	NA	NA	ADIPOQ	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ADIPOQ:range=chr3:186570848-1865724935'pad=0,hg19_refFlat_ADIPOQ:range=chr3:186570848-1865724935'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90chr3:186560463-186576252"	NA	inner
LNCA_21_P0003830	5.5291147	P	5.439586	P	1.06402253050743	0	lncRNA	TCONS_00008776	NA	NA	NA	NA	XLOC_003508	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003508), lincRNA [TCONS_00008776]"	chr4:38289673-38289732	hs|4p14	Agilent_HUMAN_G3V2	TCONS_00008776	TCONS_00008776	chr4	 38289673	 38289732	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005334	1.5589724	A	0.92717254	A	1.54949689076325	0	lncRNA	ENST00000496217	NA	NA	NA	NA	XLOC_006606	NA	ENST00000496217	NA	NA	"BROAD Institute lincRNA (XLOC_006606), lincRNA [TCONS_00013253]"	chr7:129423269-129423210	hs|7q32.2	Agilent_HUMAN_G3V2	ENST00000496217	ENST00000496217	chr7	129423210	129423269	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24956_PI429285431	2.4490173	A	2.9302132	A	0.71638354262812	0	lncRNA	26495-1_{1..3000}	lnc-EDC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-EDC4-1:1	chr16	 67916364	 67919363	+	lnc-EDC4-1	lnc-EDC4-1:1	ENSG00000263126.1	CTC-479C5.10	EDC4	NA	chr16:67906999-67918406	inner
CUST_23988_PI429285431	3.3299494	P	3.3876014	P	0.960826602002045	0	lncRNA	25543-1_{1..602}	lnc-PRKD1-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRKD1-8:2	chr14	 29234349	 29234950	-	lnc-PRKD1-8	lnc-PRKD1-8:2	ENSG00000257126.1	RP11-966I7.1	FOXG1	NA	chr14:29236287-29238871	inter
CUST_24217_PI429285431	7.5213375	P	7.7532353	P	0.851514026561113	0	lncRNA	25768-1_{1..650}	lnc-FLRT1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FLRT1-2:1	chr11	 63870666	 63871315	+	lnc-FLRT1-2	lnc-FLRT1-2:1	ENSG00000256824.1	RP11-21A7A.2	MACROD1	NA	chr11:63860666-63881125	inner
CUST_18143_PI429285431	4.750531	P	4.54389	P	1.15399822105519	0	lncRNA	19878-1_{1..1001}	lnc-SLC39A11-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC39A11-2:12	chr17	 70081131	 70082131	-	lnc-SLC39A11-2	lnc-SLC39A11-2:12	ENSG00000234899	AC005152.2	NA	NA	NA	inter
CUST_7667_PI429285431	0.92441183	A	0.99699104	A	0.950936419842193	0	lncRNA	9300-1_{1..2664}	lnc-AC131971.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC131971.1-1:1	chr11	  3062010	  3064673	+	lnc-AC131971.1-1	lnc-AC131971.1-1:1	ENSG00000247473	ENSG00000247473.1	CARS	"hg19_refFlat_CARS:range=chr11:3022344-30785975'pad=0,hg19_refFlat_CARS:range=chr11:3022344-30785975'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CARS:range=chr11:3022418-30785975'pad=0,hg19_refFlat_CARS:range=chr11:3022418-30785975'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80chr11:3052010-3072490"	NA	inter
CUST_9314_PI429285431	8.965861	P	9.108998	P	0.90554798704408	0	lncRNA	10820-1_{1..486}	lnc-TRMT61B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRMT61B-1:3	chr2	 28958893	 28959378	-	lnc-TRMT61B-1	lnc-TRMT61B-1:3	XLOC_002035	linc-RBKS-1	NA	NA	NA	inter
CUST_17370_PI429285431	5.6101646	P	5.873814	P	0.832978174477226	0	lncRNA	19090-1_{1..432}	lnc-EMB-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EMB-3:1	chr5	 50265885	 50266316	-	lnc-EMB-3	lnc-EMB-3:1	XLOC_004815	linc-EMB-3	NA	NA	NA	inter
CUST_4237_PI429285431	0.91711503	A	1.1041198	A	0.87842756387792	0	lncRNA	4195-1_{1..329}	"transcript_id ""ENST00000547777.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547777.1"" | genecode_v17"	chr12	 47641907	 47642235	+	ENSG00000258181.1	ENST00000547777.1	RP11-493L12.4	RP11-493L12.4-001	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50"	NA	inter
CUST_13240_PI429285431	2.1385145	A	2.1938553	A	0.962367081509057	0	lncRNA	14869-1_{1..404}	lnc-TTC21A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC21A-2:1	chr3	 39246636	 39247039	+	lnc-TTC21A-2	lnc-TTC21A-2:1	XLOC_002617	linc-CCR8-2	LOC729454	NA	chr3:39244498-39256163	inter
LNCA_21_P0003310	2.0826614	A	1.8779299	A	1.15247184028366	0	lncRNA	TCONS_00007323	NA	NA	NA	NA	XLOC_003358	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003358), lincRNA [TCONS_00007323]"	chr3:186174212-186173530	hs|3q27.3	Agilent_HUMAN_G3V2	TCONS_00007323	TCONS_00007323	chr3	186173530	186174212	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28070_PI429285431	0.9153584	A	0.90782547	A	1.00523508460884	0	lncRNA	29689-1_{1..380}	n325337|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331179|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331179|-1.1766600|-0.4535801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325337|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331179|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331179|-1.1766600|-0.4535801	chr2	 38511939	 38512318	+	NA	NA	NA	NA	ATL2	NA	chr2:38522027-38524219	inter
CUST_27885_PI429285431	0.89001703	A	1.3102542	A	0.747301762504572	0	lncRNA	29479-1_{1..747}	n325122|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332224|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332224|-1.1625900|-0.4775801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325122|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000332224|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000332224|-1.1625900|-0.4775801	chr2	146389127	146389873	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34806_PI429285431	0.8926362	A	0.89363205	A	0.999309967562197	0	lncRNA	36241-1_{1..479}	n341712|CR597008|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4184|NULL|-1.0512800|-0.4945277	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341712|CR597008|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4184|NULL|-1.0512800|-0.4945277	chr9	 85158632	 85159110	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21885_PI429285431	0.88641995	A	0.89017344	A	0.997401660532103	0	lncRNA	23494-1_{1..777}	lnc-CD180-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CD180-1:1	chr5	 66299672	 66300448	-	lnc-CD180-1	lnc-CD180-1:1	ENSG00000229666.1	MAST4-AS1	MAST4	NA	chr5:66289672-66309781	inner
CUST_12787_PI429285431	2.7172422	A	2.7625532	A	0.969080890838178	0	lncRNA	14413-1_{1..611}	lnc-RP11-529J17.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-529J17.2.1-1:1	chr15	 23652107	 23652717	+	lnc-RP11-529J17.2.1-1	lnc-RP11-529J17.2.1-1:1	XLOC_011166	linc-MKRN3-3	NA	NA	NA	inter
CUST_7261_PI429285431	1.0957265	A	0.8873341	A	1.15540000016764	0	lncRNA	8042-1_{1..328}	"transcript_id ""ENST00000365347.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000365347.1"" | genecode_v17"	chr9	 77414811	 77415138	+	ENSG00000202217.1	ENST00000365347.1	RN7SKP47	RN7SKP47-201	TRPM6	NA	chr9:77404811-77425138	inner
CUST_52223_PI429285431	0.9151044	A	0.9266015	A	0.992062487301661	0	lncRNA	55736-1_{1..1133}	hg19_lincRNAsTranscripts_TCONS_00030028 range=chrUn_gl000223:149816-161368 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00030028 range=chrUn_gl000223:149816-161368 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrUn_gl000223	   149816	   150948	+	NA	NA	NA	NA	NA	"hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90"	NA	Unknown
CUST_45637_PI429285431	1.0841811	A	0.91401374	A	1.12518900479484	0	lncRNA	50018-2_{3001..3735}	"gi|226061032|ref|NR_027432.1| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|226061032|ref|NR_027432.1| Homo sapiens uncharacterized LOC219347 (LOC219347), transcript variant 5, non-coding RNA"	Chr10	 81808989	 81809723	-	219347	NR_027432.1	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818419645'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818506735'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0,hg19_refFlat_TMEM254:range=chr10:81838456-818419205'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0,hg19_refFlat_TMEM254:range=chr10:81838782-818501395'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20"	NA	inter
CUST_30246_PI429285431	4.1440773	P	4.5712366	P	0.743724755825945	0	lncRNA	32021-1_{1..456}	n335119|AY124379|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250725|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250725|1.5265000|-0.1012553	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335119|AY124379|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250725|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250725|1.5265000|-0.1012553	chr20	 62328082	 62328537	+	NA	NA	NA	NA	ZGPAT	NA	chr20:62338794-62339916	inter
CUST_43397_PI429285431	3.936677	P	4.315278	P	0.769183115907118	0	lncRNA	48210-1_{1..2879}	"gi|297139695|ref|NR_033690.1| Homo sapiens chromosome 1 open reading frame 213 (C1orf213), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|297139695|ref|NR_033690.1| Homo sapiens chromosome 1 open reading frame 213 (C1orf213), transcript variant 1, non-coding RNA"	Chr1	 23695464	 23698342	+	148898	NR_033690.1	NA	NA	NA	NA	NA	inter
CUST_42358_PI429285431	4.0321517	P	4.278441	P	0.84306203619364	0	lncRNA	45029-1_{1..65}	ENST00000385582 ncrna:snoRNA chromosome:GRCh37:1:173834760:173834824:-1 gene:ENSG00000208317 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385582 ncrna:snoRNA chromosome:GRCh37:1:173834760:173834824:-1 gene:ENSG00000208317 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	173834760	173834824	-	ENSG00000208317	ENST00000385582	NA	NA	DARS2	NA	chr1:173824760-173827682	inter
CUST_42070_PI429285431	1.6533523	A	0.96988255	A	1.60599761458739	0	lncRNA	43986-1_{1..110}	ENST00000385026 ncrna:miRNA chromosome:GRCh37:1:198828173:198828282:-1 gene:ENSG00000207759 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385026 ncrna:miRNA chromosome:GRCh37:1:198828173:198828282:-1 gene:ENSG00000207759 gene_biotype:miRNA transcript_biotype:miRNA	chr1	198828173	198828282	-	ENSG00000207759	ENST00000385026	NA	NA	NA	NA	NA	inter
CUST_4315_PI429285431	0.8922014	A	2.0123193	A	0.460056227036975	0	lncRNA	4270-1_{1..567}	"transcript_id ""ENST00000441255.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441255.2"" | genecode_v17"	chr12	 68777100	 68777666	-	ENSG00000251301.2	ENST00000441255.2	RP11-81H14.2	RP11-81H14.2-001	NA	NA	NA	inter
CUST_49916_PI429285431	1.6275223	A	1.6470219	A	0.986574839475849	0	lncRNA	53666-1_{1..930}	hg19_lincRNAsTranscripts_TCONS_l2_00026776 range=chr7:97595586-97596623 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026776 range=chr7:97595586-97596623 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 97595586	 97596515	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49382_PI429285431	7.726138	P	8.7280445	P	0.4993396938386	0	lncRNA	53196-1_{1..433}	hg19_lincRNAsTranscripts_TCONS_l2_00023090 range=chr5:126388305-126409084 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023090 range=chr5:126388305-126409084 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	126388305	126388737	-	NA	NA	NA	NA	C5orf63	NA	chr5:126378305-126409184	inner
CUST_239_PI429285431	2.5945592	A	3.5200377	P	0.52650586232807	0	lncRNA	231-1_{1..1352}	"transcript_id ""ENST00000569425.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569425.2"" | genecode_v17"	chr1	 56713966	 56715317	-	ENSG00000260971.2	ENST00000569425.2	RP11-504A18.1	RP11-504A18.1-001	NA	NA	NA	inter
LNCA_33_P3354881	5.2951994	P	5.7035537	P	0.753482390308773	0	lncRNA	ENST00000520538	XR_108874	XR_108874	NA	NA	NA	NA	ENST00000520538	THC2582897	NA	"PREDICTED: Homo sapiens hypothetical LOC100506753 (LOC100506753), miscRNA [XR_108874]"	chr8:103876780-103876839	hs|8q22.3	Agilent_HUMAN_G3V2	ENST00000520538	ENST00000520538	chr8	103876780	103876839	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47677_PI429285431	3.3522742	P	3.5495858	P	0.872174309153202	0	lncRNA	51658-1_{1..1124}	"gi|149944448|ref|NR_003592.1| Homo sapiens testis-specific transcript, Y-linked 7B (non-protein coding) (TTTY7B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|149944448|ref|NR_003592.1| Homo sapiens testis-specific transcript, Y-linked 7B (non-protein coding) (TTTY7B), non-coding RNA"	ChrY	  9544433	  9545556	-	100101120	NR_003592.1	NA	NA	NA	NA	NA	inter
CUST_25289_PI429285431	3.1026967	A	2.5261922	A	1.4912317685738	0	lncRNA	26820-1_{1..481}	lnc-AC040934.1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC040934.1-2:3	chr17	 45382888	 45383368	-	lnc-AC040934.1-2	lnc-AC040934.1-2:3	ENSG00000263293.1	RP11-290H9.4	ITGB3	NA	chr17:45372888-45390077	inner
CUST_3020_PI429285431	1.2551638	A	0.893523	A	1.2848863885972	0	lncRNA	2999-1_{1..270}	"transcript_id ""ENST00000519280.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519280.1"" | genecode_v17"	chr8	 16544446	 16544715	-	ENSG00000253496.2	ENST00000519280.1	RP11-13N12.1	RP11-13N12.1-002	NA	NA	NA	inter
CUST_16435_PI429285431	1.5932466	A	0.9027823	A	1.61380280218866	0	lncRNA	18134-1_{1..297}	lnc-NAA35-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAA35-1:1	chr9	 88474709	 88475005	+	lnc-NAA35-1	lnc-NAA35-1:1	XLOC_007433	linc-NAA35-1	NA	NA	NA	inter
CUST_3273_PI429285431	0.90177524	A	0.90010214	A	1.00116037726514	0	lncRNA	3251-1_{1..877}	"transcript_id ""ENST00000520543.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000520543.1"" | genecode_v17"	chr8	115294302	115295178	+	ENSG00000254339.1	ENST00000520543.1	RP11-267L5.1	RP11-267L5.1-004	NA	NA	NA	inter
LNCA_21_P0004241	7.850216	P	8.028593	P	0.883696576403872	0	lncRNA	TCONS_00009926	NA	NA	NA	NA	XLOC_004346	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004346), lincRNA [TCONS_00009926]"	chr5:38793086-38793145	hs|5p13.1	Agilent_HUMAN_G3V2	TCONS_00009926	TCONS_00009926	chr5	 38793086	 38793145	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22020_PI429285431	6.224489	P	6.392655	P	0.88997332486578	0	lncRNA	23629-1_{1..574}	lnc-EDAR-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EDAR-4:2	chr2	109150389	109150962	-	lnc-EDAR-4	lnc-EDAR-4:2	ENSG00000214184.3	AC012487.2	LIMS1	NA	chr2:109150811-109160638	inter
CUST_7357_PI429285431	0.8893713	A	0.88015467	A	1.00640893096881	0	lncRNA	9003-1_{1..1894}	lnc-ABHD12B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ABHD12B-2:1	chr14	 51388351	 51390244	+	lnc-ABHD12B-2	lnc-ABHD12B-2:1	ENSG00000247448	ENST00000501589	PYGL	NA	chr14:51378351-51400015	inner
CUST_34047_PI429285431	4.0488462	P	4.4683857	P	0.747663236059502	0	lncRNA	35578-1_{1..1435}	n340864|BC041881|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3329|NULL|-0.7297260|-0.1754235	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340864|BC041881|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3329|NULL|-0.7297260|-0.1754235	chr17	 73893140	 73894574	+	NA	NA	NA	NA	TRIM65	"hg19_refFlat_MRPL38:range=chr17:73894931-739009565'pad=0,hg19_refFlat_MRPL38:range=chr17:73894931-739009565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60chr17:73885041-73893054"	NA	inner
CUST_46660_PI429285431	10.328073	P	9.669126	P	1.57892976750766	0	lncRNA	50830-1_{1..2346}	"gi|313569852|ref|NR_037613.1| Homo sapiens CKLF-like MARVEL transmembrane domain containing 3 (CMTM3), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|313569852|ref|NR_037613.1| Homo sapiens CKLF-like MARVEL transmembrane domain containing 3 (CMTM3), transcript variant 6, non-coding RNA"	Chr16	 66637935	 66640280	+	123920	NR_037613.1	NA	NA	NA	NA	NA	inter
CUST_16484_PI429285431	0.9066123	A	0.91344976	A	0.995271846953142	0	lncRNA	18182-1_{1..342}	lnc-PITRM1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PITRM1-7:1	chr10	  2544065	  2544406	-	lnc-PITRM1-7	lnc-PITRM1-7:1	XLOC_008688	linc-ADARB2-5	NA	NA	NA	inter
CUST_16977_PI429285431	0.89279556	A	0.8848119	A	1.00554919145876	0	lncRNA	18687-2_{3001..6000}	lnc-KIAA0226-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA0226-3:1	chr3	197373878	197376877	-	lnc-KIAA0226-3	lnc-KIAA0226-3:1	XLOC_003405	linc-BDH1-3	NA	NA	NA	inter
CUST_45387_PI429285431	2.4568284	A	2.9699779	A	0.700691111308944	0	lncRNA	49819-1_{1..3000}	"gi|190570167|ref|NR_023390.1| Homo sapiens long intergenic non-protein coding RNA 476 (LINC00476), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|190570167|ref|NR_023390.1| Homo sapiens long intergenic non-protein coding RNA 476 (LINC00476), transcript variant 1, non-coding RNA"	Chr9	 98568370	 98571369	-	100128782	NR_023390.1	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
CUST_32578_PI429285431	1.3668065	A	0.90507245	A	1.37719614721098	0	lncRNA	34241-1_{1..1531}	n339196|AK129774|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1628|NULL|-0.8905650|-0.3368336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339196|AK129774|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1628|NULL|-0.8905650|-0.3368336	chr2	240176885	240178415	-	NA	NA	NA	NA	HDAC4	NA	chr2:240166885-240188428	inner
CUST_9929_PI429285431	1.3077483	A	1.2763231	A	1.02202125475197	0	lncRNA	11454-1_{1..358}	lnc-RP11-884K10.5.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-884K10.5.1-1:1	chr3	 54065411	 54065768	-	lnc-RP11-884K10.5.1-1	lnc-RP11-884K10.5.1-1:1	XLOC_003131	linc-SELK-2	NA	NA	NA	inter
LNCA_32_P113812	3.1816864	P	2.674055	A	1.42171412467983	0	lncRNA	ENST00000425161	XR_132880	XR_132880	NA	NA	NA	NA	ENST00000425161	THC2689950	NA	"PREDICTED: Homo sapiens hypothetical LOC100652798 (LOC100652798), miscRNA [XR_132880]"	chr1:206808056-206807997	hs|1q32.1	Agilent_HUMAN_G3V2	ENST00000425161	ENST00000425161	chr1	206807997	206808056	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47340_PI429285431	5.5472546	P	5.5837417	P	0.975026205907342	0	lncRNA	51393-1_{1..2573}	"gi|388890223|ref|NR_051955.1| Homo sapiens ADP-ribosylation factor related protein 1 (ARFRP1), transcript variant 10, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388890223|ref|NR_051955.1| Homo sapiens ADP-ribosylation factor related protein 1 (ARFRP1), transcript variant 10, non-coding RNA"	Chr20	 62329995	 62332567	-	10139	NR_051955.1	NA	NA	NA	NA	NA	inter
CUST_39214_PI429285431	3.5810394	P	1.4390963	A	4.41356088556464	0	lncRNA	40189-1_{1..2435}	n386025|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009yzx.1||0.3810310|-0.3329414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386025|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009yzx.1||0.3810310|-0.3329414	chr11	118097405	118099839	-	NA	NA	NA	NA	MPZL3	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00chr11:118100336-118109840"	NA	inter
LNCA_21_P0013607	4.889829	P	5.3042903	P	0.750299603004553	0	lncRNA	ENST00000429224	NA	NA	NA	NA	XLOC_l2_015075	NA	ENST00000429224	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015075), lincRNA [TCONS_l2_00029131]"	chr9:139440810-139442339	hs|9q34.3	Agilent_HUMAN_G3V2	ENST00000429224	ENST00000429224	chr9	139440810	139442339	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_709_PI429285431	1.3678554	A	0.91667306	A	1.36716023429508	0	lncRNA	702-1_{1..1067}	"transcript_id ""ENST00000591400.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591400.1"" | genecode_v17"	chr2	  6776709	  6777775	-	ENSG00000236172.2	ENST00000591400.1	AC097517.2	AC097517.2-022	NA	NA	NA	inter
CUST_28668_PI429285431	1.775505	A	1.6161904	A	1.11675645992824	0	lncRNA	30360-1_{1..439}	n326047|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047127|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047127|-0.9195730|-0.3587699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326047|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047127|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047127|-0.9195730|-0.3587699	chr10	 21669167	 21669605	-	NA	NA	NA	NA	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-26.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60"	NA	inter
CUST_10526_PI429285431	2.27051	A	2.9539711	A	0.622669664424131	0	lncRNA	12054-1_{1..471}	lnc-IGFBP7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGFBP7-2:1	chr4	 58291782	 58292252	-	lnc-IGFBP7-2	lnc-IGFBP7-2:1	XLOC_003959	linc-IGFBP7-12	NA	NA	NA	inter
CUST_23107_PI429285431	0.9014568	A	0.9078762	A	0.99556029574383	0	lncRNA	24678-1_{1..528}	lnc-HIC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HIC1-1:1	chr17	  2004416	  2004943	+	lnc-HIC1-1	lnc-HIC1-1:1	ENSG00000262810.1	RP11-667K14.5	SMG6	NA	chr17:1994416-2014854	inner
LNCA_21_P0002566	8.902404	P	9.027953	P	0.916655154888335	0	lncRNA	TCONS_00003554	NA	NA	NA	NA	XLOC_001327	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001327), lincRNA [TCONS_00003554]"	chr2:6142005-6142064	hs|2p25.2	Agilent_HUMAN_G3V2	TCONS_00003554	TCONS_00003554	chr2	  6142005	  6142064	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18400_PI429285431	10.265344	P	10.155657	P	1.07899411786704	0	lncRNA	20125-1_{1..2176}	lnc-CHCHD8-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-CHCHD8-1:2	chr11	 73596627	 73598802	-	lnc-CHCHD8-1	lnc-CHCHD8-1:2	ENSG00000247629	RP11-707G14.6	PAAF1	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00chr11:73588033-73607748"	NA	inner
CUST_5358_PI429285431	9.108444	P	10.27659	P	0.444992831300658	0	lncRNA	5296-1_{1..452}	"transcript_id ""ENST00000561215.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000561215.1"" | genecode_v17"	chr15	 98628856	 98629307	-	ENSG00000259611.1	ENST00000561215.1	CTD-2544M6.2	CTD-2544M6.2-002	NA	NA	NA	inter
CUST_18702_PI429285431	0.9023297	A	1.0649137	A	0.8934234331708	0	lncRNA	20400-1_{1..404}	lnc-AC016745.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC016745.1-1:1	chr2	114300124	114300527	-	lnc-AC016745.1-1	lnc-AC016745.1-1:1	ENSG00000231943	AL078621.4	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	inter
CUST_19579_PI429285431	0.88299227	A	0.8851563	A	0.998501133131513	0	lncRNA	21235-1_{1..146}	lnc-BAG2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BAG2-5:1	chr6	 58243460	 58243605	+	lnc-BAG2-5	lnc-BAG2-5:1	ENSG00000236143.1	XXbac-BPG55C20.6	NA	NA	NA	inter
CUST_48673_PI429285431	3.219449	P	2.2921894	A	1.90166035835667	0	lncRNA	52516-1_{1..1223}	hg19_lincRNAsTranscripts_TCONS_l2_00014725 range=chr2:98081770-98089617 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014725 range=chr2:98081770-98089617 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 98081770	 98082992	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19955_PI429285431	2.7097974	A	2.3436933	A	1.28886762746335	0	lncRNA	21609-1_{1..792}	lnc-ZNF804B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ZNF804B-1:1	chr7	 88385894	 88386685	+	lnc-ZNF804B-1	lnc-ZNF804B-1:1	ENSG00000233420.1	AC002127.4	ZNF804B	NA	chr7:88388753-88396039	inter
CUST_22121_PI429285431	5.8786936	P	4.3790584	P	2.8277120188194	0	lncRNA	23725-1_{1..3000}	lnc-IL17B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL17B-2:2	chr5	148880682	148883681	-	lnc-IL17B-2	lnc-IL17B-2:2	ENSG00000230551.3	CTB-89H12.4	CSNK1A1	NA	chr5:148874845-148890816	inner
CUST_46714_PI429285431	0.9290189	A	0.9119842	A	1.01187753862243	0	lncRNA	50872-1_{1..3000}	"gi|254281194|ref|NR_028075.1| Homo sapiens scavenger receptor class F, member 1 (SCARF1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254281194|ref|NR_028075.1| Homo sapiens scavenger receptor class F, member 1 (SCARF1), transcript variant 2, non-coding RNA"	Chr17	  1537152	  1540151	-	8578	NR_028075.2	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-60.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90"	NA	inter
CUST_29875_PI429285431	5.067481	P	5.1831527	P	0.922952496031157	0	lncRNA	31638-1_{1..416}	n333879|L33035|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193081|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193081|3.3167100|-0.0901554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333879|L33035|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193081|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193081|3.3167100|-0.0901554	chr14	106330017	106330432	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45056_PI429285431	3.6261103	P	0.91775346	A	6.53576830315875	0	lncRNA	49548-1_{1..3000}	"gi|110671312|ref|NR_003103.1| Homo sapiens protection of telomeres 1 homolog (S. pombe) (POT1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|110671312|ref|NR_003103.1| Homo sapiens protection of telomeres 1 homolog (S. pombe) (POT1), transcript variant 3, non-coding RNA"	Chr7	124462440	124465439	-	25913	NR_003103.1	NA	NA	NA	NA	NA	inter
CUST_1060_PI429285431	4.6463985	P	5.1348658	P	0.71278194574226	0	lncRNA	1050-1_{1..269}	"transcript_id ""ENST00000451749.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451749.1"" | genecode_v17"	chr2	124200842	124201110	-	ENSG00000226708.1	ENST00000451749.1	AC073409.1	AC073409.1-001	NA	NA	NA	inter
LNCA_21_P0003273	1.6151818	A	1.936854	A	0.800141910840947	0	lncRNA	TCONS_00007063	NA	NA	NA	NA	XLOC_002975	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002975), lincRNA [TCONS_00007063]"	chr3:193796468-193796527	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00007063	TCONS_00007063	chr3	193796468	193796527	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42036_PI429285431	0.8804895	A	0.8748943	A	1.00388582743069	0	lncRNA	43913-1_{1..77}	ENST00000580728 ncrna:miRNA chromosome:GRCh37:15:99327655:99327731:1 gene:ENSG00000264480 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580728 ncrna:miRNA chromosome:GRCh37:15:99327655:99327731:1 gene:ENSG00000264480 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 99327655	 99327731	+	ENSG00000264480	ENST00000580728	NA	NA	IGF1R	NA	chr15:99317655-99337731	inner
CUST_26051_PI429285431	3.4727204	P	1.6986918	A	3.42007651052464	0	lncRNA	27566-1_{1..3000}	lnc-PMM2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-PMM2-6:1	chr16	  9201098	  9204097	+	lnc-PMM2-6	lnc-PMM2-6:1	ENSG00000263244.1	RP11-473I1.10	C16orf72	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-16.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-34.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-59.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50chr16:9191098-9213555"	NA	inner
CUST_47374_PI429285431	0.8791559	A	1.8214426	A	0.520407370456396	0	lncRNA	51422-1_{1..673}	"gi|224586824|ref|NR_027267.1| Homo sapiens long intergenic non-protein coding RNA 310 (LINC00310), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224586824|ref|NR_027267.1| Homo sapiens long intergenic non-protein coding RNA 310 (LINC00310), transcript variant 2, non-coding RNA"	Chr21	 35552978	 35553650	+	114036	NR_027267.1	NA	NA	NA	NA	NA	inter
CUST_23647_PI429285431	1.3953824	A	1.1477411	A	1.18726443756792	0	lncRNA	25212-1_{1..1338}	lnc-PRR11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRR11-1:1	chr17	 57195285	 57196622	+	lnc-PRR11-1	lnc-PRR11-1:1	ENSG00000224738.1	AC099850.1	SKA2	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-58.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.87chr17:57187308-57205628"	NA	inner
CUST_402_PI429201921	0.89835864	A	0.90717953	A	0.993904478498292	0	lncRNA	250-1_{1..3000}	TC03003195.hg.1	TCONS_l2_00020255-XLOC_l2_010422 // Broad TUCP // linc-BCHE-2 chr3:-:166552808-166562744 // chr3 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr3:-:166552808-166562744	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00020255-XLOC_l2_010422	linc-BCHE-2	chr3	166552808	166562744	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15330_PI429285431	0.8808121	A	0.88985986	A	0.993748195032856	0	lncRNA	17009-1_{1..233}	lnc-PFKP-16:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PFKP-16:1	chr10	  3990701	  3990933	+	lnc-PFKP-16	lnc-PFKP-16:1	XLOC_008357	linc-AKR1E2-6	NA	NA	NA	inter
CUST_14732_PI429285431	3.2743647	P	3.3843286	P	0.926611247835141	0	lncRNA	16395-1_{1..865}	lnc-LAMB3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-LAMB3-2:1	chr1	209740880	209741744	-	lnc-LAMB3-2	lnc-LAMB3-2:1	XLOC_001186	linc-PLXNA2-3	NA	NA	NA	inter
CUST_25203_PI429285431	3.2159634	P	3.8668168	P	0.636903453559465	0	lncRNA	26734-1_{1..786}	lnc-SEC14L1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SEC14L1-1:2	chr17	 75089326	 75090111	+	lnc-SEC14L1-1	lnc-SEC14L1-1:2	ENSG00000234912.3	LINC00338	SEC14L1	NA	chr17:75084725-75099844	inner
CUST_10834_PI429285431	1.1182728	A	1.0736703	A	1.03139896291359	0	lncRNA	12370-1_{1..381}	lnc-NSUN2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NSUN2-1:3	chr5	  6706141	  6706521	-	lnc-NSUN2-1	lnc-NSUN2-1:3	XLOC_004725	linc-NSUN2-3	PAPD7	NA	chr5:6714718-6716385	inter
LNCA_21_P0008603	1.2654595	A	0.9261863	A	1.26511909250327	0	lncRNA	TCONS_00023325	NA	NA	NA	NA	XLOC_011189	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011189), lincRNA [TCONS_00023325]"	chr15:26385085-26385144	hs|15q12	Agilent_HUMAN_G3V2	TCONS_00023325	TCONS_00023325	chr15	 26385085	 26385144	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21591_PI429285431	1.1990492	A	1.7441301	A	0.685352969828565	0	lncRNA	23204-2_{3001..3498}	lnc-NBPF24-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-NBPF24-2:1	chr1	147485690	147486187	-	lnc-NBPF24-2	lnc-NBPF24-2:1	ENSG00000215859.4	RP6-74O6.2	NA	NA	NA	inter
CUST_41236_PI429285431	11.724574	P	11.947049	P	0.857093796403127	0	lncRNA	42155-1_{1..78}	ENST00000582827 ncrna:miRNA chromosome:GRCh37:X:7065901:7065978:1 gene:ENSG00000264268 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582827 ncrna:miRNA chromosome:GRCh37:X:7065901:7065978:1 gene:ENSG00000264268 gene_biotype:miRNA transcript_biotype:miRNA	chrX	  7065901	  7065978	+	ENSG00000264268	ENST00000582827	NA	NA	HDHD1	NA	chrX:7055901-7066231	inner
CUST_5844_PI429285431	6.4025693	P	5.7647414	P	1.55598472764129	0	lncRNA	5773-1_{1..784}	"transcript_id ""ENST00000583462.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000583462.1"" | genecode_v17"	chr17	 38168479	 38169262	-	ENSG00000265799.1	ENST00000583462.1	RP11-387H17.6	RP11-387H17.6-002	MED24	NA	chr17:38175350-38180882	inter
CUST_9_PI429285431	5.7870135	P	5.9218044	P	0.910801832979936	0	lncRNA	8-1_{1..832}	"transcript_id ""ENST00000515092.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515092.1"" | genecode_v17"	chr5	124043520	124044351	+	ENSG00000249112.1	ENST00000515092.1	RP11-43D2.2	RP11-43D2.2-001	ZNF608	NA	chr5:124033520-124056430	inner
CUST_50872_PI429285431	0.9057938	A	1.2041314	A	0.813188884390625	0	lncRNA	54516-1_{1..381}	hg19_lincRNAsTranscripts_TCONS_l2_00004781 range=chr11:116523419-116528687 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004781 range=chr11:116523419-116528687 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	116523419	116523799	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48123_PI429285431	5.6152773	P	5.7075067	P	0.93807202371931	0	lncRNA	51993-1_{1..3000}	"gi|410169835|ref|XR_111094.3| PREDICTED: Homo sapiens uncharacterized LOC100133190 (LOC100133190), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410169835|ref|XR_111094.3| PREDICTED: Homo sapiens uncharacterized LOC100133190 (LOC100133190), misc_RNA"	NA	NA	NA	NA	NA	XR_111094.3	NA	NA	NA	"hg19_refFlat_C10orf116:range=chr10:88728302-887303395'pad=0,hg19_refFlat_C10orf116:range=chr10:88728302-887303395'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.10"	NA	Unknown
CUST_35163_PI429285431	1.6684115	A	2.442155	A	0.584897813081455	0	lncRNA	36565-1_{1..1257}	n342138|AJ420543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4623|NULL|-1.0372400|-0.2988243	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342138|AJ420543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4623|NULL|-1.0372400|-0.2988243	chr6	136656851	136658107	-	NA	NA	NA	NA	MAP7	NA	chr6:136663419-136673354	inter
CUST_18986_PI429285431	4.150783	P	4.242367	P	0.938491770865623	0	lncRNA	20678-1_{1..398}	lnc-APBA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-APBA1-1:1	chr9	 72043544	 72043941	-	lnc-APBA1-1	lnc-APBA1-1:1	ENSG00000243888	RP11-548B3.3	APBA1	NA	chr9:72042449-72053637	inner
CUST_11987_PI429285431	3.8555863	P	3.7484221	P	1.07710896012237	0	lncRNA	13567-1_{1..329}	lnc-THBD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THBD-1:1	chr20	 23011181	 23011509	-	lnc-THBD-1	lnc-THBD-1:1	XLOC_013687	linc-FOXA2-1	SSTR4	NA	chr20:23001181-23017314	inter
CUST_12148_PI429285431	1.8117695	A	2.0272672	A	0.861248995337058	0	lncRNA	13748-1_{1..221}	lnc-KCNC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNC4-1:1	chr1	110825623	110825843	+	lnc-KCNC4-1	lnc-KCNC4-1:1	XLOC_000341	linc-RBM15	NA	NA	NA	inter
LNCA_21_P0003102	0.88791764	A	0.90233684	A	0.990055152483499	0	lncRNA	TCONS_00006442	NA	NA	NA	NA	XLOC_003048	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003048), lincRNA [TCONS_00006442]"	chr3:12275600-12275541	hs|3p25.2	Agilent_HUMAN_G3V2	TCONS_00006442	TCONS_00006442	chr3	 12275541	 12275600	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_117_PI429201921	1.600568	A	2.4397051	A	0.558977803030777	0	lncRNA	114-1_{...	TC6_cox_hap2000214.hg.1	TCONS_l2_00031076-XLOC_l2_015980 // Broad TUCP // linc-FAM71E1 chr6_cox_hap2:+:1407785-1411187 // chr6_cox_hap2 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6_cox_hap2:+:1407785-1411187	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031076-XLOC_l2_015980	linc-FAM71E1	chr6_cox_hap2	  1407785	  1411187	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014617	0.8825381	A	1.6521592	A	0.586571507696475	0	lncRNA	XR_110573	XR_110573	XR_110573	NA	NA	LOC100506219	uncharacterized LOC100506219	NA	THC2655334	NA	"PREDICTED: Homo sapiens hypothetical LOC100506219 (LOC100506219), miscRNA [XR_110573]"	chr5:135548410-135548469	hs|5q31.1	Agilent_HUMAN_G3V2	XR_110573	XR_110573	chr5	135548410	135548469	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38682_PI429285431	11.864542	P	12.539672	P	0.626275783601241	0	lncRNA	39681-1_{1..460}	n384029|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zdj.1||3.0622200|-0.1271940	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384029|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zdj.1||3.0622200|-0.1271940	chr21	 44985069	 44985528	+	NA	NA	NA	NA	HSF2BP	NA	chr21:44975069-44995529	inner
CUST_9903_PI429285431	0.97013545	A	1.3950444	A	0.744885740599748	0	lncRNA	11427-1_{1..868}	lnc-PAX1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAX1-1:3	chr20	 21596305	 21597172	+	lnc-PAX1-1	lnc-PAX1-1:3	XLOC_013480	linc-PAX1-1	NA	NA	NA	inter
CUST_45740_PI429285431	1.0685451	A	0.9047283	A	1.12024695109169	0	lncRNA	50089-1_{1..3000}	"gi|378744219|ref|NR_046381.1| Homo sapiens zinc finger protein 195 (ZNF195), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378744219|ref|NR_046381.1| Homo sapiens zinc finger protein 195 (ZNF195), transcript variant 9, non-coding RNA"	Chr11	  3379157	  3382156	-	7748	NR_046381.1	NA	NA	NA	NA	NA	inter
CUST_43280_PI429285431	1.9001896	A	1.822067	A	1.05564342224007	0	lncRNA	48098-1_{1..370}	ENST00000602874 havana:sense_intronic chromosome:GRCh37:14:74371970:74372339:1 gene:ENSG00000270140 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602874 havana:sense_intronic chromosome:GRCh37:14:74371970:74372339:1 gene:ENSG00000270140 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr14	 74371970	 74372339	+	ENSG00000270140	ENST00000602874	NA	NA	ZNF410	NA	chr14:74361970-74382339	inter
CUST_11018_PI429285431	0.8952294	A	0.8866467	A	1.00596680519249	0	lncRNA	12564-1_{1..306}	lnc-C7orf53-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C7orf53-1:1	chr7	112257155	112257460	+	lnc-C7orf53-1	lnc-C7orf53-1:1	XLOC_006209	linc-FOXP2-6	NA	NA	NA	inter
CUST_30080_PI429285431	1.0728405	A	0.9077487	A	1.12123742111742	0	lncRNA	31851-1_{1..424}	n334600|U79029|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221460_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221460_10|-0.5023410|-0.0842160	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334600|U79029|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221460_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221460_10|-0.5023410|-0.0842160	chr6	  2842260	  2842683	-	NA	NA	NA	NA	SERPINB1	NA	chr6:2833733-2842081	inter
LNCA_21_P0003645	1.1141899	A	4.4423237	P	0.0995707771056493	0	lncRNA	TCONS_00008213	NA	NA	NA	NA	XLOC_003674	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003674), lincRNA [TCONS_00008213]"	chr4:122152252-122152311	hs|4q27	Agilent_HUMAN_G3V2	TCONS_00008213	TCONS_00008213	chr4	122152252	122152311	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24084_PI429285431	2.6791368	A	3.1684635	A	0.71235747461464	0	lncRNA	25634-1_{1..428}	lnc-PCNT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-PCNT-1:1	chr21	 47889059	 47889486	+	lnc-PCNT-1	lnc-PCNT-1:1	ENSG00000223692.1	DIP2A-IT1	DIP2A	NA	chr21:47879059-47899219	inner
CUST_17372_PI429285431	0.8881712	A	0.88471663	A	1.00239739462127	0	lncRNA	19093-1_{1..416}	lnc-LAMA4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LAMA4-1:3	chr6	112717479	112717894	-	lnc-LAMA4-1	lnc-LAMA4-1:3	XLOC_005807	linc-LAMA4-1	NA	NA	NA	inter
CUST_43939_PI429285431	11.426401	P	11.397178	P	1.0204623817873	0	lncRNA	48649-1_{1..1975}	"gi|215277012|ref|NR_024077.2| Homo sapiens WAS protein family homolog 2 pseudogene (WASH2P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|215277012|ref|NR_024077.2| Homo sapiens WAS protein family homolog 2 pseudogene (WASH2P), non-coding RNA"	Chr2	114341230	114343204	+	375260	NR_024077.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0010840	6.143224	P	6.2677155	P	0.917327312314978	0	lncRNA	TCONS_l2_00003176	NA	NA	NA	NA	XLOC_l2_001689	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001689), lincRNA [TCONS_l2_00003176]"	chr10:94967535-94967594	hs|10q23.33	Agilent_HUMAN_G3V2	TCONS_l2_00003176	TCONS_l2_00003176	chr10	 94967535	 94967594	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22280_PI429285431	1.7644702	A	0.87381864	A	1.85401325713308	0	lncRNA	23880-1_{1..535}	lnc-VGLL3-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-VGLL3-6:2	chr3	 84918742	 84919276	-	lnc-VGLL3-6	lnc-VGLL3-6:2	ENSG00000242641.1	RP11-735B13.1	NA	NA	NA	inter
CUST_45044_PI429285431	7.889368	P	7.596741	P	1.22486860865796	0	lncRNA	49540-1_{1..1143}	"gi|212276287|ref|NR_024412.1| Homo sapiens uncharacterized LOC401397 (LOC401397), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|212276287|ref|NR_024412.1| Homo sapiens uncharacterized LOC401397 (LOC401397), transcript variant 1, non-coding RNA"	Chr7	112756773	112757915	-	401397	NR_024412.1	NA	NA	NA	NA	NA	inter
CUST_7465_PI429285431	4.223583	P	4.1226387	P	1.07247520957617	0	lncRNA	9108-1_{1..551}	lnc-C8orf56-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C8orf56-1:5	chr8	104298066	104298616	-	lnc-C8orf56-1	lnc-C8orf56-1:5	ENSG00000247081	RP11-318M2.2	NA	NA	NA	inter
CUST_30145_PI429285431	3.3646827	P	3.751879	P	0.764614094805751	0	lncRNA	31919-1_{1..371}	n334794|AJ230648|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245083|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245083|2.1208000|-0.1715653	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334794|AJ230648|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245083|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245083|2.1208000|-0.1715653	chr14	107034726	107035096	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42588_PI429285431	8.341593	P	8.498027	P	0.89724009702628	0	lncRNA	45433-1_{1..75}	ENST00000365400 ncrna:snoRNA chromosome:GRCh37:14:101435285:101435359:1 gene:ENSG00000202270 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365400 ncrna:snoRNA chromosome:GRCh37:14:101435285:101435359:1 gene:ENSG00000202270 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101435285	101435359	+	ENSG00000202270	ENST00000365400	NA	NA	NA	NA	NA	inter
CUST_124_PI429201921	3.1011763	P	3.7036543	P	0.658621722297149	0	lncRNA	117-2_{3001..3424}	TC16001880.hg.1	TCONS_00024301-XLOC_011930 // Rinn lincRNAs // linc-ZNF423-2 chr16:-:49954640-49958065 // chr16 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr16:-:49954640-49958065	NA	Affy_HUMAN_HTA2.0	TCONS_00024301-XLOC_011930	linc-ZNF423-2	chr16	 49954640	 49958065	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44081_PI429285431	0.8917285	A	0.90737104	A	0.989215986429216	0	lncRNA	48749-1_{1..701}	"gi|317171915|ref|NR_037696.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 3 pseudogene (LOC100286922), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|317171915|ref|NR_037696.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 3 pseudogene (LOC100286922), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_037696.1	NA	NA	NA	NA	NA	Unknown
CUST_8771_PI429285431	6.681104	P	6.9325523	P	0.840052675483819	0	lncRNA	10314-2_{3001..3571}	lnc-AL078585.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL078585.1-4:1	chr6	163933139	163933709	-	lnc-AL078585.1-4	lnc-AL078585.1-4:1	ENSG00000251068	ENST00000513446	QKI	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30chr6:163920139-163942378"	NA	inner
LNCA_21_P0013827	0.8749867	A	0.87245893	A	1.00175365250185	0	lncRNA	TCONS_l2_00030573	NA	NA	NA	NA	XLOC_l2_015789	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015789), lincRNA [TCONS_l2_00030573]"	chrX:105708635-105708576	hs|Xq22.3	Agilent_HUMAN_G3V2	TCONS_l2_00030573	TCONS_l2_00030573	chrX	105708576	105708635	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008929	0.87542695	A	0.8734133	A	1.00139673034063	0	lncRNA	TCONS_00024384	NA	NA	NA	NA	XLOC_011711	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011711), lincRNA [TCONS_00024384]"	chr16:48655980-48656039	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00024384	TCONS_00024384	chr16	 48655980	 48656039	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48969_PI429285431	0.8961313	A	0.979545	A	0.943821734751267	0	lncRNA	52808-1_{1..809}	hg19_lincRNAsTranscripts_TCONS_l2_00019678 range=chr3:193766674-193776285 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019678 range=chr3:193766674-193776285 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	193766674	193767482	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51683_PI429285431	1.2767297	A	1.6618829	A	0.765697684679395	0	lncRNA	55245-1_{1..365}	hg19_lincRNAsTranscripts_TCONS_l2_00011480 range=chr17:76480976-76482058 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011480 range=chr17:76480976-76482058 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 76480976	 76481340	-	NA	NA	NA	NA	DNAH17	NA	chr17:76470976-76492058	inner
LNCA_21_P0003826	1.2489328	A	0.87441456	A	1.29640657255596	0	lncRNA	TCONS_00008745	NA	NA	NA	NA	XLOC_003440	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003440), lincRNA [TCONS_00008745]"	chr4:6690864-6690923	hs|4p16.1	Agilent_HUMAN_G3V2	TCONS_00008745	TCONS_00008745	chr4	  6690864	  6690923	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13459_PI429285431	5.2410107	P	5.5156174	P	0.826675651444127	0	lncRNA	15097-1_{1..363}	lnc-NETO1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NETO1-1:5	chr18	 70931475	 70931837	-	lnc-NETO1-1	lnc-NETO1-1:5	XLOC_012877	linc-NETO1-3	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80"	NA	inter
CUST_30921_PI429285431	0.9691868	A	1.6793244	A	0.61126183571377	0	lncRNA	32709-1_{1..808}	n336972|BC105803|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338284|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338284|3.5890000|-0.3955338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336972|BC105803|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338284|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338284|3.5890000|-0.3955338	chr4	155507830	155508637	-	NA	NA	NA	NA	FGA	NA	chr4:155504280-155511897	inner
LNCA_21_P0010560	2.8041606	A	2.5423007	A	1.19902347106398	0	lncRNA	TCONS_l2_00000595	NA	NA	NA	NA	XLOC_l2_000423	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000423), lincRNA [TCONS_l2_00000595]"	chr1:149379142-149379201	hs|1q21.2	Agilent_HUMAN_G3V2	TCONS_l2_00000595	TCONS_l2_00000595	chr1	149379142	149379201	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8312_PI429285431	12.366594	P	11.235236	P	2.19064847631594	0	lncRNA	9896-1_{1..469}	lnc-SERPINC1-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SERPINC1-1:11	chr1	173837098	173837566	-	lnc-SERPINC1-1	lnc-SERPINC1-1:11	ENSG00000234741	GAS5	DARS2	NA	chr1:173827098-173827682	inter
LNCA_21_P0011025	0.87185454	A	0.8738969	A	0.998585345492693	0	lncRNA	XR_132971	XR_132971	XR_132971	NA	Hs.503862	LOC100506870	uncharacterized LOC100506870	NA	THC2603766	NA	"PREDICTED: Homo sapiens hypothetical LOC100506870, transcript variant 1 (LOC100506870), miscRNA [XR_132971]"	chr11:112162913-112162972	hs|11q23.1	Agilent_HUMAN_G3V2	XR_132971	XR_132971	chr11	112162913	112162972	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30111_PI429285431	6.1132584	P	5.860476	P	1.19150284804409	0	lncRNA	31884-1_{1..331}	n334660|AF486423|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243596|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243596|2.1693700|-0.0720865	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334660|AF486423|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000243596|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000243596|2.1693700|-0.0720865	chr2	 70901809	 70902139	-	NA	NA	NA	NA	ADD2	NA	chr2:70891809-70943575	inner
CUST_16197_PI429285431	6.9016833	P	7.0112963	P	0.926836650586907	0	lncRNA	17903-1_{1..294}	lnc-RP11-738G5.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-RP11-738G5.2.1-1:1	chr8	 50424686	 50424979	-	lnc-RP11-738G5.2.1-1	lnc-RP11-738G5.2.1-1:1	XLOC_007081	linc-SNAI2	NA	NA	NA	inter
CUST_49087_PI429285431	1.0569812	A	1.6574179	A	0.65955427981899	0	lncRNA	52911-1_{1..293}	hg19_lincRNAsTranscripts_TCONS_l2_00020401 range=chr4:9400848-9405280 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020401 range=chr4:9400848-9405280 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	  9400848	  9401140	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15361_PI429285431	0.92849016	A	1.016829	A	0.940605165404916	0	lncRNA	17044-2_{3001..5488}	lnc-AL445989.1-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL445989.1-10:1	chr13	 66549596	 66552083	+	lnc-AL445989.1-10	lnc-AL445989.1-10:1	XLOC_010415	linc-C13orf34-10	NA	NA	NA	inter
CUST_37824_PI429285431	0.9089334	A	2.7739782	A	0.274514678811817	0	lncRNA	38917-1_{1..501}	n346345|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1895|NULL|-1.3860700|-0.1857564	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346345|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1895|NULL|-1.3860700|-0.1857564	chr3	197204905	197205405	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008786	5.9645405	P	6.261006	P	0.814244796444114	0	lncRNA	TCONS_00023797	NA	NA	NA	NA	XLOC_011590	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011590), lincRNA [TCONS_00023797]"	chr15:95126843-95126784	hs|15q26.2	Agilent_HUMAN_G3V2	TCONS_00023797	TCONS_00023797	chr15	 95126784	 95126843	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25738_PI429285431	0.8983249	A	0.90684986	A	0.994108372122429	0	lncRNA	27264-1_{1..744}	lnc-AC009365.3.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC009365.3.1-5:1	chr7	131955870	131956613	+	lnc-AC009365.3.1-5	lnc-AC009365.3.1-5:1	ENSG00000225144.1	AC018643.4	PLXNA4	NA	chr7:131945870-131966028	inner
LNCA_21_P0011793	1.8142331	A	0.9302301	A	1.84548882288973	0	lncRNA	TCONS_l2_00013456	NA	NA	NA	NA	XLOC_l2_007191	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007191), lincRNA [TCONS_l2_00013456]"	chr2:9255322-9255381	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_l2_00013456	TCONS_l2_00013456	chr2	  9255322	  9255381	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47987_PI429285431	0.9015812	A	1.9910192	A	0.469944405194414	0	lncRNA	51875-1_{1..2763}	"gi|410173008|ref|XR_172078.1| PREDICTED: Homo sapiens uncharacterized LOC100505534 (LOC100505534), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410173008|ref|XR_172078.1| PREDICTED: Homo sapiens uncharacterized LOC100505534 (LOC100505534), misc_RNA"	NA	NA	NA	NA	NA	XR_172078.1	NA	NA	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	Unknown
LNCA_21_P0014867	0.90429795	A	0.92453945	A	0.986067627843184	0	lncRNA	XR_132760	XR_132760	XR_132760	NA	NA	LOC100652866	uncharacterized LOC100652866	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652866 (LOC100652866), miscRNA [XR_132760]"	chr14:45600494-45600553	hs|14q21.2	Agilent_HUMAN_G3V2	XR_132760	XR_132760	chr14	 45600494	 45600553	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3366_PI429285431	0.9231317	A	1.2207936	A	0.813569838375259	0	lncRNA	3341-1_{1..285}	"transcript_id ""ENST00000437471.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437471.1"" | genecode_v17"	chr9	 11275314	 11275598	-	ENSG00000230365.1	ENST00000437471.1	RP11-23D5.1	RP11-23D5.1-001	NA	NA	NA	inter
CUST_18776_PI429285431	7.528892	P	7.4420385	P	1.06205133388891	0	lncRNA	20472-1_{1..981}	lnc-C14orf49-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C14orf49-4:5	chr14	 96000030	 96001010	-	lnc-C14orf49-4	lnc-C14orf49-4:5	ENSG00000247092	SNHG10	GLRX5	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30chr14:96001323-96010582"	NA	inter
LNCA_19_P00317016	1.886032	A	1.6051154	A	1.21496655451136	0	lncRNA	THC2573057	NA	NA	NA	NA	XLOC_006037	NA	NA	THC2573057	NA	"BROAD Institute lincRNA (XLOC_006037), lincRNA [TCONS_00012989]"	chr7:030590338-030590397	hs|7p14.3	Agilent_HUMAN_G3V2	THC2573057	THC2573057	chr7	 30590338	 30590397	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012541	0.8901293	A	1.6938705	A	0.572861703423645	0	lncRNA	XR_109995	XR_109995	XR_109995	NA	Hs.559386	LOC285286	uncharacterized LOC285286	NA	THC2713564	NA	"PREDICTED: Homo sapiens hypothetical LOC285286 (LOC285286), miscRNA [XR_109995]"	chr3:72109205-72109146	hs|3p13	Agilent_HUMAN_G3V2	XR_109995	XR_109995	chr3	 72109146	 72109205	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008156	0.88590294	A	0.89908886	A	0.990901857588655	0	lncRNA	TCONS_00021991	NA	NA	NA	NA	XLOC_010591	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010591), lincRNA [TCONS_00021991]"	chr13:45902852-45902793	hs|13q14.13	Agilent_HUMAN_G3V2	TCONS_00021991	TCONS_00021991	chr13	 45902793	 45902852	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17305_PI429285431	0.88713557	A	0.8858619	A	1.00088323058808	0	lncRNA	19023-1_{1..395}	lnc-TSPO2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSPO2-1:1	chr6	 40688483	 40688877	+	lnc-TSPO2-1	lnc-TSPO2-1:1	XLOC_005286	linc-TSPO2-1	NA	NA	NA	inter
LNCA_21_P0004495	0.8782038	A	0.88531965	A	0.995079812607323	0	lncRNA	AK098570	NA	AK098570	NA	Hs.171348	XLOC_004325	NA	NA	THC2788686	NA	"BROAD Institute lincRNA (XLOC_004325), lincRNA [TCONS_00010650]"	chr5:29162589-29162648	hs|5p13.3	Agilent_HUMAN_G3V2	AK098570	AK098570	chr5	 29162589	 29162648	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22617_PI429285431	2.0664155	A	3.026494	A	0.514028943196637	0	lncRNA	24203-1_{1..574}	lnc-ARID3B-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARID3B-3:4	chr15	 74771385	 74771958	+	lnc-ARID3B-3	lnc-ARID3B-3:4	ENSG00000247240.3	RP11-10O17.2	NA	NA	NA	inter
LNCA_21_P0010443	8.662155	P	8.470331	P	1.14220689607057	0	lncRNA	TCONS_00029703	NA	NA	NA	NA	XLOC_014379	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014379), lincRNA [TCONS_00029703]"	chr22:39686607-39686548	hs|22q13.1	Agilent_HUMAN_G3V2	TCONS_00029703	TCONS_00029703	chr22	 39686548	 39686607	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13443_PI429285431	1.3491186	A	1.072566	A	1.21129696197366	0	lncRNA	15081-1_{1..408}	lnc-ATXN3L-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATXN3L-3:1	chrX	 13437688	 13438095	-	lnc-ATXN3L-3	lnc-ATXN3L-3:1	XLOC_008116	linc-ATXN3L	NA	NA	NA	inter
LNCA_21_P0004342	2.4176157	A	1.877505	A	1.45408408693718	0	lncRNA	TCONS_00010185	NA	NA	NA	NA	XLOC_004653	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004653), lincRNA [TCONS_00010185]"	chr5:175414304-175414363	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_00010185	TCONS_00010185	chr5	175414304	175414363	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24072_PI429285431	0.89894253	A	2.9475403	A	0.241718907213396	0	lncRNA	25622-1_{1..428}	lnc-SOX30-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SOX30-1:1	chr5	157116942	157117369	-	lnc-SOX30-1	lnc-SOX30-1:1	ENSG00000253798.1	AC008694.3	C5orf52	NA	chr5:157106942-157107162	inter
CUST_9043_PI429285431	1.0539998	A	1.9714746	A	0.529434898316405	0	lncRNA	10568-2_{3001..3837}	lnc-PHYHD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHYHD1-1:1	chr9	131669291	131670127	+	lnc-PHYHD1-1	lnc-PHYHD1-1:1	ENSG00000249552	ENST00000508774	LRRC8A	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70chr9:131656291-131676498"	NA	inner
LNCA_21_P0014668	4.578231	P	4.698666	P	0.91991023836762	0	lncRNA	XR_111078	XR_111078	XR_111078	NA	Hs.646712	LOC729815	uncharacterized LOC729815	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC729815 (LOC729815), miscRNA [XR_111078]"	chr10:81266207-81266148	hs|10q22.3	Agilent_HUMAN_G3V2	XR_111078	XR_111078	chr10	 81266148	 81266207	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38908_PI429285431	0.8877606	A	1.2447345	A	0.780800618054014	0	lncRNA	39897-1_{1..2110}	n384975|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pls.2||3.2621400|-0.2741520	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384975|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pls.2||3.2621400|-0.2741520	chr6	 88057219	 88059328	+	NA	NA	NA	NA	C6orf162	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-24.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60chr6:88047219-88052043"	NA	inner
CUST_1200_PI429285431	1.8700824	A	0.87697417	A	1.99046876165092	0	lncRNA	1191-1_{1..518}	"transcript_id ""ENST00000448977.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448977.1"" | genecode_v17"	chr2	199052526	199053043	-	ENSG00000237035.1	ENST00000448977.1	AC109589.1	AC109589.1-001	NA	NA	NA	inter
CUST_37094_PI429285431	2.4966385	A	2.6587825	A	0.893695955257078	0	lncRNA	38219-1_{1..788}	n345537|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1086|NULL|-1.8465600|-0.3738263	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345537|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1086|NULL|-1.8465600|-0.3738263	chr2	 91690665	 91691452	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00"	NA	inter
CUST_20885_PI429285431	1.7486576	A	0.87449443	A	1.83294458517341	0	lncRNA	22517-1_{1..685}	lnc-XKR9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XKR9-1:1	chr8	 72116411	 72117095	+	lnc-XKR9-1	lnc-XKR9-1:1	ENSG00000254031.1	RP11-326E22.1	EYA1	NA	chr8:72109668-72126458	inner
CUST_2456_PI429285431	10.399153	P	10.570029	P	0.888303142438868	0	lncRNA	2448-1_{1..549}	"transcript_id ""ENST00000412295.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412295.2"" | genecode_v17"	chr5	180708376	180708924	+	ENSG00000248103.1	ENST00000412295.2	CTC-338M12.9	CTC-338M12.9-001	NA	NA	NA	inter
LNCA_21_P0014468	4.6960416	P	4.6252294	P	1.05030781335009	0	lncRNA	XR_109955	XR_109955	XR_109955	NA	NA	LOC100132330	"mal, T-cell differentiation protein-like pseudogene"	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100132330, transcript variant 2 (LOC100132330), miscRNA [XR_109955]"	chr2:89109945-89109886	hs|2p11.2	Agilent_HUMAN_G3V2	XR_109955	XR_109955	chr2	 89109886	 89109945	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002473	2.302424	A	0.87163913	A	2.69593342466103	0	lncRNA	TCONS_00004332	NA	NA	NA	NA	XLOC_002206	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002206), lincRNA [TCONS_00004332]"	chr2:96383817-96379286	hs|2q11.1	Agilent_HUMAN_G3V2	TCONS_00004332	TCONS_00004332	chr2	 96379286	 96383817	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7808_PI429285431	0.8976811	A	0.9000501	A	0.998359281781451	0	lncRNA	9432-1_{1..1721}	lnc-OTUB2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OTUB2-1:5	chr14	 94477968	 94479688	+	lnc-OTUB2-1	lnc-OTUB2-1:5	ENSG00000175699	C14orf48	NA	NA	NA	inter
CUST_35547_PI429285431	3.7084343	P	3.584093	P	1.09000994660179	0	lncRNA	36961-2_{3001..4991}	n342670|AL512762|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5172|NULL|-0.1118520|-0.1186262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342670|AL512762|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5172|NULL|-0.1118520|-0.1186262	chr17	 18286168	 18288158	-	NA	NA	NA	NA	EVPLL	"hg19_refFlat_EVPLL:range=chr17:18284252-182915625'pad=0,hg19_refFlat_EVPLL:range=chr17:18284252-182915625'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.30;hg19_refFlat_EVPL:range=chr17:74003184-740232795'pad=0,hg19_refFlat_EVPL:range=chr17:74003184-740232795'pad=0 3'pad=0 strand=- repeatMasking=none,-101.10chr17:18281079-18292961"	NA	inner
CUST_4173_PI429285431	0.88757575	A	0.87934256	A	1.00572312731015	0	lncRNA	4131-1_{1..417}	"transcript_id ""ENST00000545999.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000545999.1"" | genecode_v17"	chr12	 15966427	 15966843	-	ENSG00000256953.1	ENST00000545999.1	RP11-6B19.2	RP11-6B19.2-001	STRAP	NA	chr12:15956427-15991208	inter
CUST_38292_PI429285431	16.240019	P	16.22031	P	1.01375497887724	0	lncRNA	39345-1_{1..693}	n381942|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tyb.1||3.6247900|-0.2417142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381942|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tyb.1||3.6247900|-0.2417142	chr12	120719939	120720631	+	NA	NA	NA	NA	NA	"hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70"	NA	inter
CUST_7926_PI429285431	0.8818156	A	0.8770121	A	1.00333508153197	0	lncRNA	9537-1_{1..3000}	lnc-HSD3B2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSD3B2-1:1	chr1	120074820	120077819	+	lnc-HSD3B2-1	lnc-HSD3B2-1:1	ENSG00000249401	ENST00000506663	NA	"hg19_refFlat_GAPDH:range=chr12:6645757-66473365'pad=0,hg19_refFlat_GAPDH:range=chr12:6645757-66473365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_GAPDH:range=chr12:6643999-66473365'pad=0,hg19_refFlat_GAPDH:range=chr12:6643999-66473365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40"	NA	inter
CUST_47143_PI429285431	0.9056379	A	1.576847	A	0.627980166366775	0	lncRNA	51224-1_{1..522}	"gi|338797759|ref|NR_040042.1| Homo sapiens DACT3 antisense RNA 1 (DACT3-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338797759|ref|NR_040042.1| Homo sapiens DACT3 antisense RNA 1 (DACT3-AS1), transcript variant 2, non-coding RNA"	Chr19	 47163621	 47164142	+	100506068	NR_040042.1	NA	NA	NA	NA	NA	inter
CUST_9287_PI429285431	0.8880534	A	0.89076614	A	0.998121438626752	0	lncRNA	10793-1_{1..2922}	lnc-ACTR3C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACTR3C-1:1	chr7	149934645	149937566	-	lnc-ACTR3C-1	lnc-ACTR3C-1:1	XLOC_006645	linc-ZNF467-1	ACTR3C	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70chr7:149944301-149944873"	NA	inter
CUST_41274_PI429285431	0.9044602	A	1.616306	A	0.610538509215021	0	lncRNA	42245-1_{1..68}	ENST00000577915 ncrna:miRNA chromosome:GRCh37:1:23370798:23370865:1 gene:ENSG00000263793 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577915 ncrna:miRNA chromosome:GRCh37:1:23370798:23370865:1 gene:ENSG00000263793 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 23370798	 23370865	+	ENSG00000263793	ENST00000577915	NA	NA	KDM1A	NA	chr1:23360798-23380865	inner
CUST_25313_PI429285431	4.9009914	P	4.618422	P	1.21635925870409	0	lncRNA	26843-1_{1..557}	lnc-FAM101A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM101A-2:1	chr12	124796364	124796920	+	lnc-FAM101A-2	lnc-FAM101A-2:1	ENSG00000255906.1	RP11-522N14.1	FAM101A	NA	chr12:124786364-124800570	inner
CUST_3438_PI429285431	0.88259095	A	0.8812065	A	1.00096008820402	0	lncRNA	3409-1_{1..328}	"transcript_id ""ENST00000424980.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424980.1"" | genecode_v17"	chr9	 82120719	 82121046	-	ENSG00000233086.2	ENST00000424980.1	RP11-375O18.2	RP11-375O18.2-001	NA	NA	NA	inter
CUST_51793_PI429285431	0.9143005	A	1.2956157	A	0.767737381269926	0	lncRNA	55342-1_{1..444}	hg19_lincRNAsTranscripts_TCONS_l2_00012894 range=chr19:17502024-17502873 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012894 range=chr19:17502024-17502873 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 17502024	 17502467	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9417_PI429285431	0.90680236	A	0.9237988	A	0.988288090201331	0	lncRNA	10920-1_{1..1005}	lnc-C12orf42-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C12orf42-3:2	chr12	103344367	103345371	-	lnc-C12orf42-3	lnc-C12orf42-3:2	XLOC_010176	linc-PAH-1	ASCL1	NA	chr12:103351452-103354294	inter
CUST_47024_PI429285431	7.012165	P	7.477072	P	0.724517780135589	0	lncRNA	51116-1_{1..3000}	"gi|209915599|ref|NR_024247.1| Homo sapiens melanoma associated antigen (mutated) 1 (MUM1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209915599|ref|NR_024247.1| Homo sapiens melanoma associated antigen (mutated) 1 (MUM1), transcript variant 2, non-coding RNA"	Chr19	  1356323	  1359322	+	84939	NR_024247.1	NA	NA	NA	NA	NA	inter
CUST_47581_PI429285431	12.487223	P	12.424527	P	1.04441566380887	0	lncRNA	51585-1_{1..729}	"gi|358030258|ref|NR_045559.1| Homo sapiens ubiquitously-expressed, prefoldin-like chaperone (UXT), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|358030258|ref|NR_045559.1| Homo sapiens ubiquitously-expressed, prefoldin-like chaperone (UXT), transcript variant 3, non-coding RNA"	ChrX	 47511191	 47511919	-	8409	NR_045559.1	NA	NA	NA	NA	NA	inter
CUST_13920_PI429285431	1.9861097	A	2.3280287	A	0.788991137454515	0	lncRNA	15568-2_{3001..6000}	lnc-EIF2AK4-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-EIF2AK4-2:9	chr15	 40360422	 40363421	+	lnc-EIF2AK4-2	lnc-EIF2AK4-2:9	XLOC_011219	linc-BUB1B	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-23.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-32.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_42829_PI429285431	9.417291	P	9.724682	P	0.808101826924834	0	lncRNA	45852-1_{1..172}	ENST00000516520 ncrna:snoRNA chromosome:GRCh37:11:12926364:12926535:-1 gene:ENSG00000252329 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516520 ncrna:snoRNA chromosome:GRCh37:11:12926364:12926535:-1 gene:ENSG00000252329 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 12926364	 12926535	-	ENSG00000252329	ENST00000516520	NA	NA	TEAD1	NA	chr11:12916364-12936535	inner
LNCA_21_P0001671	2.2605283	A	2.201292	A	1.04191407084595	0	lncRNA	TCONS_00001982	NA	NA	NA	NA	XLOC_000133	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000133), lincRNA [TCONS_00001982]"	chr1:33399800-33399859	hs|1p35.1	Agilent_HUMAN_G3V2	TCONS_00001982	TCONS_00001982	chr1	 33399800	 33399859	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15161_PI429285431	1.0438029	A	0.96812946	A	1.05385285233146	0	lncRNA	16823-1_{1..662}	lnc-CDK5R2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK5R2-1:1	chr2	219842204	219842865	+	lnc-CDK5R2-1	lnc-CDK5R2-1:1	XLOC_001866	linc-FAM134A	FEV	NA	chr2:219845809-219850379	inter
CUST_39272_PI429285431	1.5604558	A	1.2422338	A	1.24679303437366	0	lncRNA	40244-1_{1..1255}	n386210|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010edb.1||2.4961700|-0.2338228	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386210|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010edb.1||2.4961700|-0.2338228	chr19	 24344994	 24346248	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00322420	7.0152073	P	7.4552565	P	0.737109470689628	0	lncRNA	THC2524841	NA	NA	NA	NA	XLOC_l2_010723	NA	NA	THC2524841	NA	"BROAD Institute lincRNA (XLOC_l2_010723), lincRNA [TCONS_l2_00021618]"	chr4:079584285-079584344	hs|4q21.21	Agilent_HUMAN_G3V2	THC2524841	THC2524841	chr4	 79584285	 79584344	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20332_PI429285431	0.92672133	A	1.5272217	A	0.659525172562661	0	lncRNA	21975-1_{1..493}	lnc-C17orf97-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf97-5:1	chr17	   414367	   414859	+	lnc-C17orf97-5	lnc-C17orf97-5:1	ENSG00000263015.1	RP5-1029F21.3	VPS53	NA	chr17:411908-424587	inner
LNCA_21_P0014704	1.9472053	A	0.90507734	A	2.05926280531598	0	lncRNA	XR_112198	XR_112198	XR_112198	NA	NA	LOC100509671	uncharacterized LOC100509671	NA	THC2638033	NA	"PREDICTED: Homo sapiens hypothetical LOC100509671 (LOC100509671), miscRNA [XR_112198]"	chr21:44266662-44266603	hs|21q22.3	Agilent_HUMAN_G3V2	XR_112198	XR_112198	chr21	 44266603	 44266662	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13811_PI429285431	8.379022	P	8.5664	P	0.878200341141738	0	lncRNA	15453-1_{1..593}	lnc-CTAGE5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTAGE5-1:2	chr14	 39961459	 39962051	+	lnc-CTAGE5-1	lnc-CTAGE5-1:2	XLOC_010811	linc-LRFN5-3	NA	NA	NA	inter
CUST_12570_PI429285431	4.218028	P	4.4977813	P	0.823731862887065	0	lncRNA	14179-1_{1..3000}	lnc-FRMD1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRMD1-4:1	chr6	168197289	168200288	-	lnc-FRMD1-4	lnc-FRMD1-4:1	XLOC_005924	linc-TCP10-4	NA	NA	NA	inter
CUST_23362_PI429285431	1.7659626	A	2.123245	A	0.780633672697162	0	lncRNA	24931-1_{1..1221}	lnc-SPOP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-SPOP-2:1	chr17	 47651181	 47652401	-	lnc-SPOP-2	lnc-SPOP-2:1	ENSG00000249906.1	RP5-1029K10.2	NXPH3	"hg19_refFlat_NGFR:range=chr17:47572780-475903715'pad=0,hg19_refFlat_NGFR:range=chr17:47572780-475903715'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.00chr17:47653298-47661172"	NA	inter
LNCA_21_P0003698	3.3762584	P	3.7102234	P	0.793353089823688	0	lncRNA	TCONS_00008376	NA	NA	NA	NA	XLOC_003829	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003829), lincRNA [TCONS_00008376]"	chr4:188647753-188647812	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008376	TCONS_00008376	chr4	188647753	188647812	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5367_PI429285431	1.524511	A	2.5095716	A	0.505204501824477	0	lncRNA	5304-2_{3001..3907}	"transcript_id ""ENST00000431060.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431060.3"" | genecode_v17"	chr15	101393036	101393942	+	ENSG00000232386.4	ENST00000431060.3	RP11-66B24.2	RP11-66B24.2-002	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40"	NA	inter
CUST_24444_PI429285431	2.0636277	A	0.87887585	A	2.27324290489501	0	lncRNA	25997-1_{1..851}	lnc-IRF4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IRF4-1:1	chr6	   524873	   525723	+	lnc-IRF4-1	lnc-IRF4-1:1	ENSG00000230433.1	RP1-20B11.2	EXOC2	NA	chr6:514873-535581	inner
CUST_20705_PI429285431	0.8784406	A	0.88522434	A	0.995308907452791	0	lncRNA	22341-1_{1..463}	lnc-DZIP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-DZIP1-3:1	chr13	 96568212	 96568674	-	lnc-DZIP1-3	lnc-DZIP1-3:1	ENSG00000237822.1	UGGT2-IT1	UGGT2	NA	chr13:96558212-96578330	inner
CUST_15625_PI429285431	1.2537895	A	1.3902013	A	0.909779101479997	0	lncRNA	17313-1_{1..1559}	lnc-BTBD10-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTBD10-3:2	chr11	 13011003	 13012561	-	lnc-BTBD10-3	lnc-BTBD10-3:2	XLOC_009378	linc-DKK3-3	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70"	NA	inter
LNCA_21_P0008715	6.2923617	P	6.2835116	P	1.00615327596175	0	lncRNA	TCONS_00023596	NA	NA	NA	NA	XLOC_011408	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011408), lincRNA [TCONS_00023596]"	chr15:26716234-26716175	hs|15q12	Agilent_HUMAN_G3V2	TCONS_00023596	TCONS_00023596	chr15	 26716175	 26716234	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31498_PI429285431	1.673888	A	1.9014828	A	0.854057554078296	0	lncRNA	33261-1_{1..2192}	n337979|AK096530|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|365|NULL|-0.5723000|-0.2261993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337979|AK096530|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|365|NULL|-0.5723000|-0.2261993	chr22	 22051835	 22054026	-	NA	NA	NA	NA	YPEL1	NA	chr22:22051825-22064023	inner
CUST_9648_PI429285431	1.0481981	A	1.4336499	A	0.765539221759072	0	lncRNA	11166-1_{1..1003}	lnc-SAMD12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SAMD12-1:1	chr8	119737208	119738210	-	lnc-SAMD12-1	lnc-SAMD12-1:1	XLOC_007192	linc-SAMD12-2	NA	NA	NA	inter
CUST_11747_PI429285431	0.9188031	A	0.87575245	A	1.03029012431263	0	lncRNA	13327-1_{1..459}	lnc-PPP1R3D-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP1R3D-3:2	chr20	 59047976	 59048434	-	lnc-PPP1R3D-3	lnc-PPP1R3D-3:2	XLOC_013827	linc-PPP1R3D-3	NA	NA	NA	inter
CUST_17598_PI429285431	1.2937796	A	0.9232201	A	1.29285412274403	0	lncRNA	19324-1_{1..2052}	lnc-ASB7-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASB7-4:2	chr15	100891884	100893935	+	lnc-ASB7-4	lnc-ASB7-4:2	XLOC_011384	linc-ASB7-3	ADAMTS17	NA	chr15:100881884-100882183	inter
CUST_44003_PI429285431	0.8748825	A	0.87400943	A	1.00060534915882	0	lncRNA	48696-1_{1..3000}	"gi|259906386|ref|NR_028482.1| Homo sapiens DDB1 and CUL4 associated factor 17 (DCAF17), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|259906386|ref|NR_028482.1| Homo sapiens DDB1 and CUL4 associated factor 17 (DCAF17), transcript variant 3, non-coding RNA"	Chr2	172290761	172293760	+	80067	NR_028482.1	NA	NA	NA	NA	NA	inter
CUST_5691_PI429285431	1.0657907	A	0.9020846	A	1.12016099628051	0	lncRNA	5615-1_{1..1864}	"transcript_id ""ENST00000565008.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565008.1"" | genecode_v17"	chr16	 89228790	 89230653	+	ENSG00000180422.3	ENST00000565008.1	LINC00304	LINC00304-003	CDH15	NA	chr16:89238163-89240653	inter
LNCA_21_P0002892	3.5065558	P	0.87093335	A	6.21443163487635	0	lncRNA	ENST00000488210	NA	NA	NA	NA	XLOC_003293	NA	ENST00000488210	NA	NA	"BROAD Institute lincRNA (XLOC_003293), lincRNA [TCONS_00005852]"	chr3:153645062-153448550	hs|3q25.2	Agilent_HUMAN_G3V2	ENST00000488210	ENST00000488210	chr3	153448550	153645062	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30054_PI429285431	0.87907135	A	0.8734802	A	1.00388300928009	0	lncRNA	31823-1_{1..345}	n334559|U54734|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220323|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220323|-1.3280300|-0.5194515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334559|U54734|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220323|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220323|-1.3280300|-0.5194515	chr9	  5936603	  5936947	-	NA	NA	NA	NA	KIAA2026	NA	chr9:5926603-5946948	inner
CUST_4070_PI429285431	2.3137236	A	1.5475935	A	1.70070167985174	0	lncRNA	4031-1_{1..333}	"transcript_id ""ENST00000526041.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526041.1"" | genecode_v17"	chr11	108873192	108873524	-	ENSG00000255528.1	ENST00000526041.1	RP11-25I9.2	RP11-25I9.2-001	NA	NA	NA	inter
LNCA_19_P00321493	5.815115	P	6.369277	P	0.681052537743676	0	lncRNA	XR_108534	XR_108534	XR_108534	NA	NA	LOC100505920	NA	ENST00000415869	THC2676937	NA	"PREDICTED: Homo sapiens hypothetical LOC100505920 (LOC100505920), miscRNA [XR_108534]"	chr3:193921313-193921254	hs|3q29	Agilent_HUMAN_G3V2	XR_108534	XR_108534	chr3	193921254	193921313	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38386_PI429285431	1.2568154	A	1.3541291	A	0.934771918592845	0	lncRNA	39424-2_{3001..4013}	n382291|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ysh.1||6.3473700|-0.1314352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382291|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ysh.1||6.3473700|-0.1314352	chr14	106233840	106234852	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15395_PI429285431	5.9017797	P	6.7837877	P	0.542611677054528	0	lncRNA	17080-1_{1..860}	lnc-ZNF404-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF404-1:4	chr19	 44405020	 44405879	-	lnc-ZNF404-1	lnc-ZNF404-1:4	XLOC_013350	linc-ZNF404	NA	NA	NA	inter
LNCA_21_P0007564	0.8913179	A	1.5408034	A	0.637507623786954	0	lncRNA	TCONS_00020438	NA	NA	NA	NA	XLOC_009767	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009767), lincRNA [TCONS_00020438]"	chr12:54584358-54584417	hs|12q13.13	Agilent_HUMAN_G3V2	TCONS_00020438	TCONS_00020438	chr12	 54584358	 54584417	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16491_PI429285431	0.8857577	A	0.87777305	A	1.00554988148265	0	lncRNA	18189-1_{1..712}	lnc-NAV3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAV3-1:4	chr12	 77965639	 77966350	+	lnc-NAV3-1	lnc-NAV3-1:4	XLOC_009813	linc-NAV3-1	NA	NA	NA	inter
CUST_42412_PI429285431	4.9215584	P	5.5336866	P	0.65423089722611	0	lncRNA	45120-1_{1..67}	ENST00000384690 ncrna:snoRNA chromosome:GRCh37:1:45244062:45244128:1 gene:ENSG00000207421 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384690 ncrna:snoRNA chromosome:GRCh37:1:45244062:45244128:1 gene:ENSG00000207421 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 45244062	 45244128	+	ENSG00000207421	ENST00000384690	NA	NA	BEST4	NA	chr1:45245957-45253426	inter
LNCA_21_P0007402	0.875304	A	0.8748825	A	1.00029220421994	0	lncRNA	ENST00000534904	NA	BC033908	NA	Hs.409846	XLOC_009560	NA	ENST00000534904	THC2611672	NA	"BROAD Institute lincRNA (XLOC_009560), lincRNA [TCONS_00019765]"	chr11:114249609-114249550	hs|11q23.2	Agilent_HUMAN_G3V2	ENST00000534904	ENST00000534904	chr11	114249550	114249609	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20475_PI429285431	3.8776453	P	3.8761315	P	1.00104983689529	0	lncRNA	22118-1_{1..652}	lnc-LYZL1-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LYZL1-3:10	chr10	 29747203	 29747854	+	lnc-LYZL1-3	lnc-LYZL1-3:10	ENSG00000224597.3	RP11-534G20.3	SVIL	"hg19_refFlat_SVIL:range=chr10:29747176-298439875'pad=0,hg19_refFlat_SVIL:range=chr10:29747176-298439875'pad=0 3'pad=0 strand=- repeatMasking=none,-105.00chr10:29746277-29757716"	NA	inner
CUST_18562_PI429285431	1.1288445	A	0.8969747	A	1.17435598343078	0	lncRNA	20272-2_{3001..4511}	lnc-EVX1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	>lnc-EVX1-3:2	chr7	 27247331	 27248841	+	lnc-EVX1-3	lnc-EVX1-3:2	ENSG00000243766	HOTTIP	HOXA13	NA	chr7:27236499-27239725	inter
CUST_32176_PI429285431	0.8930758	A	0.90395236	A	0.992489290508961	0	lncRNA	33875-1_{1..610}	n338748|CR618830|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1169|NULL|-0.6452430|-0.3559314	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338748|CR618830|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1169|NULL|-0.6452430|-0.3559314	chr13	 60586860	 60587469	+	NA	NA	NA	NA	DIAPH3	"hg19_refFlat_DIAPH3:range=chr13:60348303-607379005'pad=0,hg19_refFlat_DIAPH3:range=chr13:60348303-607379005'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_DIAPH3:range=chr13:60240718-607379005'pad=0,hg19_refFlat_DIAPH3:range=chr13:60240718-607379005'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00chr13:60576860-60628491"	NA	inner
CUST_46262_PI429285431	1.0802343	A	2.1122584	A	0.489023567591537	0	lncRNA	50501-1_{1..1967}	"gi|389565507|ref|NR_051977.1| Homo sapiens long intergenic non-protein coding RNA 551 (LINC00551), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|389565507|ref|NR_051977.1| Homo sapiens long intergenic non-protein coding RNA 551 (LINC00551), non-coding RNA"	Chr13	107270158	107272124	+	283483	NR_051977.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008246	0.91083884	A	0.93331164	A	0.984543735359462	0	lncRNA	TCONS_00022238	NA	NA	NA	NA	XLOC_010542	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010542), lincRNA [TCONS_00022238]"	chr13:27781491-27781432	hs|13q12.13	Agilent_HUMAN_G3V2	TCONS_00022238	TCONS_00022238	chr13	 27781432	 27781491	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009772	2.0659134	A	2.2351112	A	0.889337053055851	0	lncRNA	TCONS_00027384	NA	NA	NA	NA	XLOC_013368	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013368), lincRNA [TCONS_00027384]"	chr19:47139691-47139632	hs|19q13.32	Agilent_HUMAN_G3V2	TCONS_00027384	TCONS_00027384	chr19	 47139632	 47139691	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31236_PI429285431	0.90561974	A	0.91395444	A	0.9942394819729	0	lncRNA	33025-1_{1..1845}	n337685|BC029107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|67|NULL|-0.9119860|-0.3384311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337685|BC029107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|67|NULL|-0.9119860|-0.3384311	chr15	 33057746	 33059590	-	NA	NA	NA	NA	FMN1	NA	chr15:33057747-33069570	inner
LNCA_33_P3268863	6.840335	P	7.2943587	P	0.730004013023463	0	lncRNA	XR_110537	XR_110537	XR_110537	   283171	Hs.376151	C11orf44	chromosome 11 open reading frame 44	ENST00000317019	NA	GO:0005576	"PREDICTED: Homo sapiens chromosome 11 open reading frame 44 (C11orf44), miscRNA [XR_110537]"	chr11:130584203-130584262	hs|11q24.3	Agilent_HUMAN_G3V2	XR_110537	XR_110537	chr11	130584203	130584262	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010052	1.89776	A	4.578797	P	0.155929197408283	0	lncRNA	TCONS_00028427	NA	NA	NA	NA	XLOC_013779	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013779), lincRNA [TCONS_00028427]"	chr20:47133040-47132981	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028427	TCONS_00028427	chr20	 47132981	 47133040	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33366_PI429285431	0.90539545	A	0.90801287	A	0.998187387476593	0	lncRNA	34946-1_{1..2551}	n340084|BC030624|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2539|NULL|-1.1732200|-0.3365037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340084|BC030624|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2539|NULL|-1.1732200|-0.3365037	chr10	 78647801	 78650351	+	NA	NA	NA	NA	KCNMA1	NA	chr10:78637801-78673848	inner
CUST_30611_PI429285431	3.4496148	P	3.2241082	P	1.16918773484381	0	lncRNA	32393-1_{1..369}	n335934|X69864|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323069|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323069|2.9189200|-0.1045640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335934|X69864|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323069|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323069|2.9189200|-0.1045640	chr14	106518400	106518768	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36841_PI429285431	5.8375244	P	5.874374	P	0.974781245892396	0	lncRNA	38006-1_{1..232}	n345314|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_863|NULL|-1.0290800|-0.2478764	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345314|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_863|NULL|-1.0290800|-0.2478764	chr15	 80124288	 80124519	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3970_PI429285431	5.1373734	P	5.4297886	P	0.816533963137131	0	lncRNA	3940-1_{1..390}	"transcript_id ""ENST00000601517.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601517.1"" | genecode_v17"	chr11	 64658158	 64658547	-	ENSG00000267804.1	ENST00000601517.1	RP11-665N17.4	RP11-665N17.4-001	ATG2A	NA	chr11:64662004-64668547	inter
CUST_41134_PI429285431	0.8856525	A	0.88960624	A	0.997263228073412	0	lncRNA	41919-1_{1..81}	ENST00000580742 ncrna:miRNA chromosome:GRCh37:3:114462292:114462372:-1 gene:ENSG00000264623 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580742 ncrna:miRNA chromosome:GRCh37:3:114462292:114462372:-1 gene:ENSG00000264623 gene_biotype:miRNA transcript_biotype:miRNA	chr3	114462292	114462372	-	ENSG00000264623	ENST00000580742	NA	NA	ZBTB20	NA	chr3:114452292-114472372	inner
CUST_39601_PI429285431	11.023731	P	10.707227	P	1.24530920341243	0	lncRNA	40545-1_{1..3000}	n387628|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kdy.1||1.8749000|-0.2899700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387628|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011kdy.1||1.8749000|-0.2899700	chr7	 66018552	 66021551	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44082_PI429285431	0.8968143	A	1.9342538	A	0.487191375739851	0	lncRNA	48750-1_{1..838}	"gi|318102068|ref|NR_037695.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 3 pseudogene (LOC100286922), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|318102068|ref|NR_037695.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 3 pseudogene (LOC100286922), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_037695.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003736	1.5289503	A	0.91102934	A	1.53466201516254	0	lncRNA	TCONS_00008457	NA	NA	NA	NA	XLOC_003919	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003919), lincRNA [TCONS_00008457]"	chr4:32561676-32441615	hs|4p15.1	Agilent_HUMAN_G3V2	TCONS_00008457	TCONS_00008457	chr4	 32441615	 32561676	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33142_PI429285431	0.8834104	A	0.8903949	A	0.995170413655927	0	lncRNA	34738-1_{1..1625}	n339831|AK026199|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2278|NULL|-0.9590270|-0.3834343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n339831|AK026199|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2278|NULL|-0.9590270|-0.3834343	chr18	 33296333	 33297957	+	NA	NA	NA	NA	GALNT1	NA	chr18:33286333-33291798	inter
CUST_25596_PI429285431	0.889145	A	0.9026696	A	0.990669265638897	0	lncRNA	27126-1_{1..517}	lnc-LEKR1-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LEKR1-4:5	chr3	157033600	157034116	+	lnc-LEKR1-4	lnc-LEKR1-4:5	ENSG00000243176.1	RP11-550I24.2	VEPH1	NA	chr3:157023600-157043934	inner
CUST_23643_PI429285431	1.732397	A	1.159332	A	1.48768078773793	0	lncRNA	25208-1_{1..1414}	lnc-HLTF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HLTF-1:1	chr3	148677834	148679247	-	lnc-HLTF-1	lnc-HLTF-1:1	ENSG00000240521.1	RP11-680B3.2	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70"	NA	inter
CUST_4456_PI429285431	5.7686825	P	6.162246	P	0.761246977509864	0	lncRNA	4406-1_{1..429}	"transcript_id ""ENST00000602891.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602891.1"" | genecode_v17"	chr12	123210623	123211051	-	ENSG00000270134.1	ENST00000602891.1	RP11-324E6.9	RP11-324E6.9-001	HCAR1	NA	chr12:123212153-123215129	inter
CUST_26284_PI429285431	1.3155391	A	0.8943281	A	1.33905108430889	0	lncRNA	27790-1_{1..454}	lnc-NCKAP1L-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NCKAP1L-1:4	chr12	 54823084	 54823537	+	lnc-NCKAP1L-1	lnc-NCKAP1L-1:4	ENSG00000257477.1	RP11-753H16.4	NA	NA	NA	inter
CUST_3796_PI429285431	0.89973736	A	1.04979	A	0.90121757904396	0	lncRNA	3764-1_{1..688}	"transcript_id ""ENST00000594427.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594427.1"" | genecode_v17"	chr10	109631399	109632086	-	ENSG00000229981.2	ENST00000594427.1	RP11-215N21.1	RP11-215N21.1-007	LOC100128304	"hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0,hg19_refFlat_KIF6:range=chr6:39304308-396930865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60chr10:109673555-109675061"	NA	inter
CUST_23370_PI429285431	5.053625	P	5.001071	P	1.03709927435548	0	lncRNA	24938-1_{1..837}	lnc-ANKRD34B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD34B-2:1	chr5	 79783597	 79784433	-	lnc-ANKRD34B-2	lnc-ANKRD34B-2:1	ENSG00000249042.1	CTD-2015H6.3	FAM151B	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90chr5:79783800-79793882"	NA	inner
CUST_41451_PI429285431	2.7987432	A	4.0125756	P	0.431121853658136	0	lncRNA	42630-1_{1..86}	ENST00000362111 ncrna:miRNA chromosome:GRCh37:7:130561495:130561580:-1 gene:ENSG00000198981 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362111 ncrna:miRNA chromosome:GRCh37:7:130561495:130561580:-1 gene:ENSG00000198981 gene_biotype:miRNA transcript_biotype:miRNA	chr7	130561495	130561580	-	ENSG00000198981	ENST00000362111	NA	NA	NA	NA	NA	inter
CUST_44656_PI429285431	6.1215253	P	6.002866	P	1.08572542629142	0	lncRNA	49218-1_{1..2810}	"gi|401709978|ref|NR_073111.1| Homo sapiens serpin peptidase inhibitor, clade B (ovalbumin), member 1 (SERPINB1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|401709978|ref|NR_073111.1| Homo sapiens serpin peptidase inhibitor, clade B (ovalbumin), member 1 (SERPINB1), transcript variant 2, non-coding RNA"	Chr6	  2832566	  2835375	-	1992	NR_073111.1	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70"	NA	inter
CUST_46075_PI429285431	7.603829	P	7.310989	P	1.22504946203768	0	lncRNA	50346-1_{1..2593}	"gi|374349234|ref|NR_046223.1| Homo sapiens Rho guanine nucleotide exchange factor (GEF) 25 (ARHGEF25), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374349234|ref|NR_046223.1| Homo sapiens Rho guanine nucleotide exchange factor (GEF) 25 (ARHGEF25), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_046223.1	NA	NA	NA	NA	NA	Unknown
CUST_41463_PI429285431	1.042124	A	1.2714942	A	0.853007185750024	0	lncRNA	42653-1_{1..76}	ENST00000408398 ncrna:miRNA chromosome:GRCh37:7:36958962:36959037:-1 gene:ENSG00000221325 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408398 ncrna:miRNA chromosome:GRCh37:7:36958962:36959037:-1 gene:ENSG00000221325 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 36958962	 36959037	-	ENSG00000221325	ENST00000408398	NA	NA	ELMO1	NA	chr7:36948962-36969037	inner
CUST_7633_PI429285431	0.8872086	A	0.8823812	A	1.00335170313695	0	lncRNA	9265-1_{1..590}	lnc-BTBD10-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BTBD10-3:4	chr11	 13011003	 13011592	-	lnc-BTBD10-3	lnc-BTBD10-3:4	ENSG00000251381	CTC-497E21.4	NA	NA	NA	inter
CUST_41594_PI429285431	1.420372	A	0.8921176	A	1.44218315877591	0	lncRNA	42927-1_{1..97}	ENST00000384957 ncrna:miRNA chromosome:GRCh37:15:72879558:72879654:1 gene:ENSG00000207690 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384957 ncrna:miRNA chromosome:GRCh37:15:72879558:72879654:1 gene:ENSG00000207690 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 72879558	 72879654	+	ENSG00000207690	ENST00000384957	NA	NA	ARIH1	NA	chr15:72869558-72878896	inter
CUST_41392_PI429285431	1.5873687	A	1.2326216	A	1.27876139869163	0	lncRNA	42502-1_{1..85}	ENST00000584357 ncrna:miRNA chromosome:GRCh37:7:70772658:70772742:-1 gene:ENSG00000265878 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584357 ncrna:miRNA chromosome:GRCh37:7:70772658:70772742:-1 gene:ENSG00000265878 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 70772658	 70772742	-	ENSG00000265878	ENST00000584357	NA	NA	WBSCR17	NA	chr7:70762658-70782742	inner
CUST_8767_PI429285431	2.5911126	A	0.88231254	A	3.26888825437341	0	lncRNA	10310-1_{1..2157}	lnc-HOGA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HOGA1-1:1	chr10	 99380649	 99382805	+	lnc-HOGA1-1	lnc-HOGA1-1:1	ENSG00000250201	ENST00000508674	HOGA1	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.10;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50chr10:99370649-99372559"	NA	inner
CUST_9518_PI429285431	4.1905637	P	4.897235	P	0.612732253421568	0	lncRNA	11026-1_{1..890}	lnc-EPB42-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPB42-1:1	chr15	 43517584	 43518473	-	lnc-EPB42-1	lnc-EPB42-1:1	XLOC_011456	linc-EPB42	TGM5	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40chr15:43524793-43528404"	NA	inter
CUST_26721_PI429285431	10.718821	P	10.6021	P	1.08426770413504	0	lncRNA	28217-1_{1..270}	n3893|AY077739|scaRNA|Homosapiens|U89|NONCODEv2.0|n3893|NULL|-1.5906100|-0.2243785	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n3893|AY077739|scaRNA|Homosapiens|U89|NONCODEv2.0|n3893|NULL|-1.5906100|-0.2243785	chr12	  7076499	  7076768	-	NA	NA	NA	NA	PHB2	NA	chr12:7074515-7079916	inner
CUST_9955_PI429285431	3.358034	P	3.3026454	P	1.03913896495295	0	lncRNA	11479-1_{1..265}	lnc-NCOR2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCOR2-1:2	chr12	124749943	124750207	-	lnc-NCOR2-1	lnc-NCOR2-1:2	XLOC_010235	linc-CCDC92-2	ZNF664-FAM101A	NA	chr12:124739943-124759993	inner
CUST_46614_PI429285431	12.349288	P	13.021673	P	0.627468526001422	0	lncRNA	50791-2_{3001..3886}	"gi|134288910|ref|NR_003501.1| Homo sapiens glutamyl-tRNA synthetase 2, mitochondrial (EARS2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|134288910|ref|NR_003501.1| Homo sapiens glutamyl-tRNA synthetase 2, mitochondrial (EARS2), transcript variant 2, non-coding RNA"	Chr16	 23536334	 23537219	-	124454	NR_003501.1	NA	NA	NA	NA	NA	inter
CUST_17802_PI429285431	6.5204606	P	6.7761855	P	0.837566183413422	0	lncRNA	19536-1_{1..943}	lnc-ZNF583-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF583-1:7	chr19	 56910263	 56911205	+	lnc-ZNF583-1	lnc-ZNF583-1:7	XLOC_013167	linc-ZNF583-1	ZNF583	NA	chr19:56915383-56920481	inter
CUST_4063_PI429285431	1.603149	A	1.7016126	A	0.934027155534587	0	lncRNA	4025-1_{1..380}	"transcript_id ""ENST00000527345.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527345.1"" | genecode_v17"	chr11	 98809642	 98810021	-	ENSG00000254830.1	ENST00000527345.1	RP11-99C10.1	RP11-99C10.1-001	NA	NA	NA	inter
LNCA_21_P0005569	0.87036145	A	0.8708613	A	0.999653590395464	0	lncRNA	TCONS_00014176	NA	NA	NA	NA	XLOC_006179	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006179), lincRNA [TCONS_00014176]"	chr7:95300970-95301029	hs|7q21.3	Agilent_HUMAN_G3V2	TCONS_00014176	TCONS_00014176	chr7	 95300970	 95301029	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30106_PI429285431	0.87694526	A	0.8758496	A	1.00075974209779	0	lncRNA	31879-1_{1..239}	n334652|AB180729|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000242512|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000242512|-0.0102750|-0.1421886	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334652|AB180729|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000242512|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000242512|-0.0102750|-0.1421886	chr1	152193939	152194177	-	NA	NA	NA	NA	HRNR	NA	chr1:152184558-152196669	inner
CUST_39193_PI429285431	0.89243	A	0.90315163	A	0.992595878954992	0	lncRNA	40168-1_{1..1127}	n385948|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009whw.1||0.5131450|-0.1972333	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385948|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009whw.1||0.5131450|-0.1972333	chr1	143687145	143688271	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00"	NA	inter
CUST_2286_PI429285431	0.8952265	A	1.544044	A	0.637802872391851	0	lncRNA	2278-1_{1..574}	"transcript_id ""ENST00000514769.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514769.1"" | genecode_v17"	chr5	103415612	103416185	+	ENSG00000251026.1	ENST00000514769.1	RP11-138J23.1	RP11-138J23.1-001	NA	NA	NA	inter
CUST_43357_PI429285431	7.2007184	P	7.6229362	P	0.746276519676197	0	lncRNA	48175-1_{1..2969}	"gi|338753364|ref|NR_037668.2| Homo sapiens sodium channel, non-voltage-gated 1, delta subunit (SCNN1D), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338753364|ref|NR_037668.2| Homo sapiens sodium channel, non-voltage-gated 1, delta subunit (SCNN1D), transcript variant 2, non-coding RNA"	Chr1	  1215816	  1218784	+	6339	NR_037668.2	NA	NA	NA	NA	NA	inter
CUST_9292_PI429285431	3.518074	P	3.5654483	P	0.967695930461595	0	lncRNA	10798-1_{1..709}	lnc-FRG2C-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRG2C-3:2	chr3	 75492659	 75493367	+	lnc-FRG2C-3	lnc-FRG2C-3:2	XLOC_002710	linc-FRG2C-3	NA	NA	NA	inter
CUST_41447_PI429285431	10.340852	P	10.263379	P	1.05516820635178	0	lncRNA	42625-1_{1..95}	ENST00000385100 ncrna:miRNA chromosome:GRCh37:22:23101185:23101279:1 gene:ENSG00000207835 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385100 ncrna:miRNA chromosome:GRCh37:22:23101185:23101279:1 gene:ENSG00000207835 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 23101185	 23101279	+	ENSG00000207835	ENST00000385100	NA	NA	NA	NA	NA	inter
CUST_23216_PI429285431	3.8408446	P	4.0017304	P	0.894475703358549	0	lncRNA	24788-1_{1..349}	lnc-COL9A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COL9A1-1:1	chr6	 71123540	 71123888	-	lnc-COL9A1-1	lnc-COL9A1-1:1	ENSG00000224349.2	RP11-462G2.2	FAM135A	NA	chr6:71123107-71133653	inner
CUST_7545_PI429285431	0.9181716	A	2.7089806	A	0.289009936452732	0	lncRNA	9181-1_{1..561}	lnc-SOX2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SOX2-1:6	chr3	181457357	181457917	+	lnc-SOX2-1	lnc-SOX2-1:6	ENSG00000242808	RP11-4B14.2	NA	NA	NA	inter
CUST_422_PI429285431	10.802416	P	10.700741	P	1.07301853723824	0	lncRNA	414-1_{1..554}	"transcript_id ""ENST00000457645.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457645.1"" | genecode_v17"	chr1	144300517	144301070	-	ENSG00000235398.3	ENST00000457645.1	LINC00623	LINC00623-013	NA	NA	NA	inter
CUST_30866_PI429285431	0.89779496	A	0.9035709	A	0.996004427101809	0	lncRNA	32654-1_{1..317}	n336864|AY566847|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331939_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331939_08|-1.3742000|-0.3742761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336864|AY566847|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331939_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331939_08|-1.3742000|-0.3742761	chr6	   965549	   965865	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13470_PI429285431	7.4332495	P	7.0678415	P	1.28824589915618	0	lncRNA	15108-1_{1..466}	lnc-NOL6-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOL6-1:4	chr9	 33510817	 33511282	-	lnc-NOL6-1	lnc-NOL6-1:4	XLOC_007668	linc-NOL6-4	NA	NA	NA	inter
CUST_44333_PI429285431	15.496983	P	15.339037	P	1.11569756104199	0	lncRNA	48962-1_{1..318}	"gi|298493320|ref|NR_033743.1| Homo sapiens ATP synthase, H+ transporting, mitochondrial Fo complex, subunit E (ATP5I), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298493320|ref|NR_033743.1| Homo sapiens ATP synthase, H+ transporting, mitochondrial Fo complex, subunit E (ATP5I), transcript variant 2, non-coding RNA"	Chr4	   666225	   666542	-	521	NR_033743.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0007687	0.92722064	A	0.9096245	A	1.01227139807729	0	lncRNA	ENST00000546259	NA	NA	NA	NA	XLOC_010012	NA	ENST00000546259	THC2526796	NA	"BROAD Institute lincRNA (XLOC_010012), lincRNA [TCONS_00020713]"	chr12:9800524-9800465	hs|12p13.31	Agilent_HUMAN_G3V2	ENST00000546259	ENST00000546259	chr12	  9800465	  9800524	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47722_PI429285431	0.8853449	A	1.6410257	A	0.592266831996002	0	lncRNA	51681-1_{1..3000}	"gi|385137090|ref|NR_047628.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 58, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137090|ref|NR_047628.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 58, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047628.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0012130	2.6756136	A	1.5097141	A	2.24373065444128	0	lncRNA	TCONS_l2_00016363	NA	NA	NA	NA	XLOC_l2_008692	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008692), lincRNA [TCONS_l2_00016363]"	chr20:58676414-58676473	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_l2_00016363	TCONS_l2_00016363	chr20	 58676414	 58676473	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20248_PI429285431	4.5032454	P	4.6477427	P	0.904694559021114	0	lncRNA	21891-1_{1..456}	lnc-FBXO47-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXO47-1:1	chr17	 37077788	 37078243	-	lnc-FBXO47-1	lnc-FBXO47-1:1	ENSG00000265784.1	RP1-56K13.3	LASP1	NA	chr17:37067788-37078023	inter
LNCA_21_P0001749	0.88266885	A	1.1843843	A	0.811287154044224	0	lncRNA	AF508906	NA	AF508906	NA	NA	XLOC_001126	NA	NA	THC2617628	NA	"BROAD Institute lincRNA (XLOC_001126), lincRNA [TCONS_00001758]"	chr1:185532363-185532304	hs|1q25.3	Agilent_HUMAN_G3V2	AF508906	AF508906	chr1	185532304	185532363	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9220_PI429285431	0.89125335	A	0.9033017	A	0.991683495231759	0	lncRNA	10731-1_{1..1789}	lnc-FABP5-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FABP5-5:1	chr8	 81863485	 81865273	+	lnc-FABP5-5	lnc-FABP5-5:1	ENSG00000244833	XLOC_006857	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70"	NA	inter
CUST_50678_PI429285431	1.2943015	A	1.3470773	A	0.964079617541061	0	lncRNA	54352-1_{1..785}	hg19_lincRNAsTranscripts_TCONS_l2_00003535 range=chr10:46210665-46215725 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003535 range=chr10:46210665-46215725 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 46210665	 46211449	-	NA	NA	NA	NA	FAM21C	NA	chr10:46222648-46225725	inter
CUST_37247_PI429285431	8.086725	P	8.06268	P	1.01680638863899	0	lncRNA	38354-1_{1..776}	n345678|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1227|NULL|-1.3070500|-0.2111713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345678|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1227|NULL|-1.3070500|-0.2111713	chr2	 87755093	 87755868	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46580_PI429285431	2.6469095	A	2.379089	A	1.20398757187591	0	lncRNA	50764-1_{1..1233}	"gi|207028176|ref|NR_024166.1| Homo sapiens uncharacterized LOC81854 (MGC3771), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|207028176|ref|NR_024166.1| Homo sapiens uncharacterized LOC81854 (MGC3771), transcript variant 1, non-coding RNA"	Chr16	  3160461	  3161693	-	81854	NR_024166.1	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_ZNF205:range=chr16:3163432-31703265'pad=0,hg19_refFlat_ZNF205:range=chr16:3163432-31703265'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40"	NA	inter
LNCA_21_P0002046	0.87427473	A	0.8753778	A	0.999235702363885	0	lncRNA	ENST00000456467	XR_109979	XR_109979	NA	NA	XLOC_002076	NA	ENST00000456467	THC2634169	NA	"PREDICTED: Homo sapiens hypothetical LOC100506108, transcript variant 1 (LOC100506108), miscRNA [XR_109979]"	chr2:45167802-45167743	hs|2p21	Agilent_HUMAN_G3V2	ENST00000456467	ENST00000456467	chr2	 45167743	 45167802	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009955	8.485331	P	8.456809	P	1.01996666346429	0	lncRNA	TCONS_00028157	NA	NA	NA	NA	XLOC_013517	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013517), lincRNA [TCONS_00028157]"	chr20:36205577-36205636	hs|20q11.23	Agilent_HUMAN_G3V2	TCONS_00028157	TCONS_00028157	chr20	 36205577	 36205636	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1985_PI429285431	2.1473625	A	1.3385649	A	1.75175085453039	0	lncRNA	1976-1_{1..366}	"transcript_id ""ENST00000508815.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508815.1"" | genecode_v17"	chr4	175276005	175276370	-	ENSG00000249875.1	ENST00000508815.1	RP11-51M24.1	RP11-51M24.1-001	NA	NA	NA	inter
CUST_15370_PI429285431	5.789403	P	5.8510904	P	0.958142804015408	0	lncRNA	17053-1_{1..362}	lnc-KIF4B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIF4B-1:1	chr5	154498995	154499356	+	lnc-KIF4B-1	lnc-KIF4B-1:1	XLOC_004612	linc-SGCD	NA	NA	NA	inter
CUST_20406_PI429285431	0.87509406	A	1.3347503	A	0.727159502876865	0	lncRNA	22048-1_{1..773}	lnc-DCLRE1B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DCLRE1B-2:1	chr1	114365780	114366552	+	lnc-DCLRE1B-2	lnc-DCLRE1B-2:1	ENSG00000231128.1	RP5-1073O3.2	PTPN22	NA	chr1:114356433-114376118	inner
CUST_16721_PI429285431	3.7910633	P	3.9162014	P	0.916916268454059	0	lncRNA	18428-1_{1..2034}	lnc-SUPT3H-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUPT3H-1:11	chr6	 45544322	 45546355	-	lnc-SUPT3H-1	lnc-SUPT3H-1:11	XLOC_005737	linc-SUPT3H	NA	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.31;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-40.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40"	NA	inter
LNCA_21_P0003285	0.875709	A	0.8737239	A	1.00137691354432	0	lncRNA	TCONS_00007179	NA	NA	NA	NA	XLOC_003148	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003148), lincRNA [TCONS_00007179]"	chr3:64875653-64875594	hs|3p14.1	Agilent_HUMAN_G3V2	TCONS_00007179	TCONS_00007179	chr3	 64875594	 64875653	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4248_PI429285431	2.609429	A	2.0670533	A	1.45636876046779	0	lncRNA	4205-1_{1..573}	"transcript_id ""ENST00000548564.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548564.1"" | genecode_v17"	chr12	 48225158	 48225730	+	ENSG00000257488.1	ENST00000548564.1	RP5-1057I20.2	RP5-1057I20.2-005	VDR	NA	chr12:48235320-48241681	inter
CUST_45290_PI429285431	6.9837575	P	6.4626017	P	1.43510450651917	0	lncRNA	49737-2_{3001..5454}	"gi|190610030|ref|NR_023392.1| Homo sapiens zinc finger protein 252, pseudogene (ZNF252P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|190610030|ref|NR_023392.1| Homo sapiens zinc finger protein 252, pseudogene (ZNF252P), non-coding RNA"	Chr8	146201975	146204428	-	286101	NR_023392.1	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90"	NA	inter
CUST_35116_PI429285431	4.791583	P	4.9414244	P	0.901349545352807	0	lncRNA	36521-2_{3001..3500}	n342084|AK127122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4566|NULL|-0.1558450|-0.3623664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342084|AK127122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4566|NULL|-0.1558450|-0.3623664	chr6	 88884979	 88885478	+	NA	NA	NA	NA	CNR1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10chr6:88871979-88875767"	NA	inter
LNCA_21_P0009943	1.9345983	A	1.8705548	A	1.04539162027602	0	lncRNA	TCONS_00028124	NA	NA	NA	NA	XLOC_013480	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013480), lincRNA [TCONS_00028124]"	chr20:21596599-21596658	hs|20p11.22	Agilent_HUMAN_G3V2	TCONS_00028124	TCONS_00028124	chr20	 21596599	 21596658	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7839_PI429285431	0.87168574	A	0.9107366	A	0.973295061529449	0	lncRNA	9463-1_{1..801}	lnc-JAK1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-JAK1-1:2	chr1	 65468088	 65468888	-	lnc-JAK1-1	lnc-JAK1-1:2	ENSG00000226891	RP11-182I10.3	NA	NA	NA	inter
CUST_13758_PI429285431	0.89233863	A	0.99484336	A	0.931414514901956	0	lncRNA	15403-1_{1..627}	lnc-RADIL-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RADIL-3:1	chr7	  4455727	  4456353	-	lnc-RADIL-3	lnc-RADIL-3:1	XLOC_006344	linc-CARD11-9	NA	NA	NA	inter
CUST_1436_PI429285431	5.4480405	P	5.781695	P	0.793523855396322	0	lncRNA	1425-1_{1..1331}	"transcript_id ""ENST00000489670.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000489670.1"" | genecode_v17"	chr3	109129009	109130339	+	ENSG00000228980.3	ENST00000489670.1	RP11-702L6.4	RP11-702L6.4-001	FLJ25363	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40chr3:109128837-109147864"	NA	inner
LNCA_21_P0007346	2.2707286	A	3.1338203	P	0.549773129088915	0	lncRNA	TCONS_00019626	NA	NA	NA	NA	XLOC_009427	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009427), lincRNA [TCONS_00019626]"	chr11:44545456-44545397	hs|11p11.2	Agilent_HUMAN_G3V2	TCONS_00019626	TCONS_00019626	chr11	 44545397	 44545456	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21012_PI429285431	3.7324958	P	3.87149	P	0.908152068715837	0	lncRNA	22641-1_{1..1969}	lnc-ARAP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARAP2-1:1	chr4	 36075311	 36077279	-	lnc-ARAP2-1	lnc-ARAP2-1:1	ENSG00000251160.1	RP11-399D2.1	ARAP2	NA	chr4:36067620-36085457	inner
CUST_17392_PI429285431	4.4245043	P	4.2121186	P	1.15860251354588	0	lncRNA	19115-1_{1..971}	lnc-ITGA11-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITGA11-2:2	chr15	 68779539	 68780509	-	lnc-ITGA11-2	lnc-ITGA11-2:2	XLOC_011515	linc-ITGA11	NA	NA	NA	inter
CUST_22853_PI429285431	0.89854014	A	0.9145749	A	0.988947088604478	0	lncRNA	24431-1_{1..2043}	lnc-FAS-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-FAS-3:1	chr10	 90699152	 90701194	+	lnc-FAS-3	lnc-FAS-3:1	ENSG00000180139.8	RP11-399O19.5	ACTA2	"hg19_refFlat_ACTC1:range=chr15:35082613-350870095'pad=0,hg19_refFlat_ACTC1:range=chr15:35082613-350870095'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ACTA1:range=chr1:229567246-2295688625'pad=0,hg19_refFlat_ACTA1:range=chr1:229567246-2295688625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_POTEE:range=chr2:131975976-1320222565'pad=0,hg19_refFlat_POTEE:range=chr2:131975976-1320222565'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ACTA2:range=chr10:90694980-907086875'pad=0,hg19_refFlat_ACTA2:range=chr10:90694980-907086875'pad=0 3'pad=0 strand=- repeatMasking=none,-92.80;hg19_refFlat_ACTG2:range=chr2:74128439-741467025'pad=0,hg19_refFlat_ACTG2:range=chr2:74128439-741467025'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ACTG1:range=chr17:79477716-794793805'pad=0,hg19_refFlat_ACTG1:range=chr17:79477716-794793805'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ACTB:range=chr7:5567379-55692885'pad=0,hg19_refFlat_ACTB:range=chr7:5567379-55692885'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_POTEF:range=chr2:130831817-1308780885'pad=0,hg19_refFlat_POTEF:range=chr2:130831817-1308780885'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40chr10:90694831-90709731"	NA	inner
CUST_23758_PI429285431	3.8476095	P	2.9100595	P	1.91527293854878	0	lncRNA	25321-1_{1..500}	lnc-LMOD1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LMOD1-1:2	chr1	201970139	201970638	-	lnc-LMOD1-1	lnc-LMOD1-1:2	ENSG00000234678.1	RP11-465N4.4	ELF3	NA	chr1:201979690-201980411	inner
CUST_384_PI429285431	0.91089946	A	1.2867074	A	0.770673698118789	0	lncRNA	376-1_{1..2504}	"transcript_id ""ENST00000437515.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437515.1"" | genecode_v17"	chr1	121102017	121104520	-	ENSG00000230806.1	ENST00000437515.1	RP11-343N15.1	RP11-343N15.1-002	NA	NA	NA	inner
LNCA_21_P0001449	4.5039873	P	4.8743496	P	0.773588203318384	0	lncRNA	TCONS_00001351	NA	NA	NA	NA	XLOC_000643	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000643), lincRNA [TCONS_00001351]"	chr1:246944022-246944081	hs|1q44	Agilent_HUMAN_G3V2	TCONS_00001351	TCONS_00001351	chr1	246944022	246944081	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30391_PI429285431	4.4522977	P	4.150783	P	1.23243768300788	0	lncRNA	32171-1_{1..510}	n335509|BC060316|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000260041|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000260041|1.2237200|-0.2056878	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335509|BC060316|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000260041|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000260041|1.2237200|-0.2056878	chr4	   437979	   438488	-	NA	NA	NA	NA	ZNF721	NA	chr4:428134-477912	inner
CUST_35333_PI429285431	2.143033	A	2.0781739	A	1.04598277948385	0	lncRNA	36742-1_{1..826}	n342371|BC015452|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4863|NULL|1.4866100|-0.1690340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342371|BC015452|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4863|NULL|1.4866100|-0.1690340	chr13	 24463025	 24463850	+	NA	NA	NA	NA	MIPEP	"hg19_refFlat_C1QTNF9B:range=chr13:24465428-244711255'pad=0,hg19_refFlat_C1QTNF9B:range=chr13:24465428-244711255'pad=0 3'pad=0 strand=- repeatMasking=none,-103.40;hg19_refFlat_C1QTNF9:range=chr13:24890142-248959065'pad=0,hg19_refFlat_C1QTNF9:range=chr13:24890142-248959065'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.40chr13:24453025-24463587"	NA	inner
LNCA_19_P00317432	3.6297028	P	4.4329376	P	0.573062818751426	0	lncRNA	XR_132650	XR_132650	XR_132650	NA	NA	LOC100506694	uncharacterized LOC100506694	NA	THC2497772	NA	"PREDICTED: Homo sapiens hypothetical LOC100506694, transcript variant 3 (LOC100506694), miscRNA [XR_132650]"	chr19:28297059-28297118	hs|19q11	Agilent_HUMAN_G3V2	XR_132650	XR_132650	chr19	 28297059	 28297118	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33404_PI429285431	4.563772	P	4.976681	P	0.751107339118338	0	lncRNA	34983-1_{1..337}	n340126|Y11609|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2585|NULL|-0.9910220|-0.0462818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340126|Y11609|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2585|NULL|-0.9910220|-0.0462818	chr10	102874610	102874946	-	NA	NA	NA	NA	TLX1NB	NA	chr10:102864610-102884945	inner
CUST_4578_PI429285431	0.8854208	A	0.8917415	A	0.995628407964157	0	lncRNA	4527-1_{1..469}	"transcript_id ""ENST00000452659.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452659.1"" | genecode_v17"	chr13	 30937313	 30937781	-	ENSG00000238121.1	ENST00000452659.1	LINC00426	LINC00426-005	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90"	NA	inter
CUST_554_PI429285431	1.6183149	A	0.8960283	A	1.64979480627566	0	lncRNA	546-1_{1..727}	"transcript_id ""ENST00000443636.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443636.1"" | genecode_v17"	chr1	209541007	209541733	+	ENSG00000231648.1	ENST00000443636.1	RP11-372M18.2	RP11-372M18.2-001	NA	NA	NA	inter
CUST_51603_PI429285431	2.952948	A	3.0107021	A	0.960758606395165	0	lncRNA	55169-1_{1..1024}	hg19_lincRNAsTranscripts_TCONS_l2_00010686 range=chr17:29334910-29348178 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010686 range=chr17:29334910-29348178 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 29334910	 29335933	+	NA	NA	NA	NA	RNF135	"hg19_refFlat_YWHAE:range=chr17:1248741-13034045'pad=0,hg19_refFlat_YWHAE:range=chr17:1248741-13034045'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80chr17:29324910-29326929"	NA	inter
LNCA_21_P0011889	1.7834423	A	3.0430028	P	0.417671178925518	0	lncRNA	ENST00000433036	NA	NA	NA	NA	XLOC_l2_007832	NA	ENST00000433036	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007832), lincRNA [TCONS_l2_00014331]"	chr2:242630054-242633574	hs|2q37.3	Agilent_HUMAN_G3V2	ENST00000433036	ENST00000433036	chr2	242630054	242633574	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35940_PI429285431	2.5462983	A	2.3297293	A	1.16196692218513	0	lncRNA	37302-2_{3001..3609}	n344577|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_125|NULL|-1.3161100|-0.2749986	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344577|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_125|NULL|-1.3161100|-0.2749986	chr5	 36703302	 36703910	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10"	NA	inter
CUST_52116_PI429285431	8.6369295	P	8.327394	P	1.23930861938567	0	lncRNA	55641-1_{1..573}	hg19_lincRNAsTranscripts_TCONS_l2_00017588 range=chr22:18985666-19002321 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017588 range=chr22:18985666-19002321 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 18985666	 18986238	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2387_PI429285431	0.906537	A	0.91951597	A	0.99104400949355	0	lncRNA	2380-1_{1..530}	"transcript_id ""ENST00000504620.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504620.1"" | genecode_v17"	chr5	144717495	144718024	-	ENSG00000250842.1	ENST00000504620.1	CTC-806A22.1	CTC-806A22.1-001	NA	NA	NA	inter
CUST_38185_PI429285431	7.6798425	P	7.5876093	P	1.06601903550849	0	lncRNA	39252-1_{1..1483}	n381452|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jgc.1||0.1635010|-0.1653714	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381452|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jgc.1||0.1635010|-0.1653714	chr10	 48952550	 48954032	+	NA	NA	NA	NA	FAM25C	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CTSL1:range=chr9:90342519-903460225'pad=0,hg19_refFlat_CTSL1:range=chr9:90342519-903460225'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90chr10:48962451-48990309"	NA	inter
CUST_32566_PI429285431	1.8396213	A	2.0278366	A	0.87769080600972	0	lncRNA	34230-1_{1..688}	n339183|BC018494|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1614|NULL|-1.1861700|-0.2451817	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339183|BC018494|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1614|NULL|-1.1861700|-0.2451817	chr2	237300228	237300915	+	NA	NA	NA	NA	IQCA1	"hg19_refFlat_IQCA1:range=chr2:237233331-2374159105'pad=0,hg19_refFlat_IQCA1:range=chr2:237233331-2374159105'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_IQCA1:range=chr2:237233331-2374123055'pad=0,hg19_refFlat_IQCA1:range=chr2:237233331-2374123055'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00chr2:237290228-237310891"	NA	inter
CUST_34979_PI429285431	5.323102	P	3.474096	P	3.60251890181548	0	lncRNA	36395-1_{1..2503}	n341903|AL137346|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4384|NULL|-1.1973500|-0.4547251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341903|AL137346|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4384|NULL|-1.1973500|-0.4547251	chr6	 72016166	 72018668	+	NA	NA	NA	NA	OGFRL1	NA	chr6:72006166-72011973	inter
CUST_40520_PI429285431	0.9170993	A	1.3284775	A	0.75190473933412	0	lncRNA	41283-2_{3001..4204}	n409559|NR_033942|lncRNA|Homosapiens||RefGeneNoncode|NR_033942||11.3447000|-0.0936393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409559|NR_033942|lncRNA|Homosapiens||RefGeneNoncode|NR_033942||11.3447000|-0.0936393	chr7	143959088	143960291	-	NA	NA	NA	NA	OR2A7	NA	chr7:143955789-143956721	inner
LNCA_21_P0012796	4.762453	P	1.3239146	A	10.8418451379783	0	lncRNA	ENST00000500324	NA	NA	NA	NA	XLOC_l2_011277	NA	ENST00000500324	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011277), lincRNA [TCONS_l2_00021991]"	chr4:137094470-137094411	hs|4q28.3	Agilent_HUMAN_G3V2	ENST00000500324	ENST00000500324	chr4	137094411	137094470	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9103_PI429285431	0.89701253	A	0.8995093	A	0.998270867588989	0	lncRNA	10625-1_{1..1467}	lnc-KCNC2-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-KCNC2-2:5	chr12	 74686095	 74687561	-	lnc-KCNC2-2	lnc-KCNC2-2:5	ENSG00000251138	ENST00000515416	NA	"hg19_refFlat_VENTX:range=chr10:135051419-1350538105'pad=0,hg19_refFlat_VENTX:range=chr10:135051419-1350538105'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20"	NA	inter
CUST_47238_PI429285431	4.335627	P	3.9533098	P	1.30343369898686	0	lncRNA	51313-1_{1..3000}	"gi|223278358|ref|NR_001558.3| Homo sapiens long intergenic non-protein coding RNA 261 (LINC00261), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223278358|ref|NR_001558.3| Homo sapiens long intergenic non-protein coding RNA 261 (LINC00261), non-coding RNA"	Chr20	 22541191	 22544190	-	140828	NR_001558.3	NA	NA	NA	NA	NA	inter
CUST_3579_PI429285431	1.129585	A	0.8795841	A	1.18920785686896	0	lncRNA	3549-1_{1..2321}	"transcript_id ""ENST00000421077.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421077.1"" | genecode_v17"	chr10	  2208526	  2210846	+	ENSG00000227912.1	ENST00000421077.1	RP11-69C17.3	RP11-69C17.3-001	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.29"	NA	inter
CUST_45670_PI429285431	10.323367	P	10.320722	P	1.00183505595077	0	lncRNA	50046-1_{1..2340}	"gi|291463293|ref|NR_033406.1| Homo sapiens polymerase (DNA directed), lambda (POLL), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|291463293|ref|NR_033406.1| Homo sapiens polymerase (DNA directed), lambda (POLL), transcript variant 4, non-coding RNA"	Chr10	103338639	103340978	-	27343	NR_033406.1	NA	NA	NA	NA	NA	inter
CUST_48621_PI429285431	2.2898622	A	1.0861657	A	2.30329069007596	0	lncRNA	52468-1_{1..580}	hg19_lincRNAsTranscripts_TCONS_l2_00015849 range=chr2:79363991-79365495 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015849 range=chr2:79363991-79365495 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 79363991	 79364570	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37672_PI429285431	14.663184	P	14.718037	P	0.962692529383567	0	lncRNA	38765-1_{1..369}	n346158|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1708|NULL|-1.3047200|-0.1747873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346158|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1708|NULL|-1.3047200|-0.1747873	chr5	 77081947	 77082315	-	NA	NA	NA	NA	TBCA	NA	chr5:77071947-77072185	inter
CUST_32635_PI429285431	7.1004944	P	4.91461	P	4.55005631081679	0	lncRNA	34293-2_{3001..3721}	n339259|AK091226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1691|NULL|-1.1905600|-0.3210384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339259|AK091226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1691|NULL|-1.1905600|-0.3210384	chr3	 15090057	 15090777	+	NA	NA	NA	NA	NR2C2	NA	chr3:15077057-15090780	inner
CUST_29833_PI429285431	0.8899239	A	1.3385808	A	0.732724672287243	0	lncRNA	31596-1_{1..862}	n333672|D83030|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000101783_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000101783_03|-1.1941500|-0.4751416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333672|D83030|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000101783_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000101783_03|-1.1941500|-0.4751416	chr6	  2571489	  2572350	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23695_PI429285431	0.8910582	A	1.1049685	A	0.862197150719416	0	lncRNA	25260-1_{1..393}	lnc-XKR9-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XKR9-1:2	chr8	 72074516	 72074908	+	lnc-XKR9-1	lnc-XKR9-1:2	ENSG00000254031.1	RP11-326E22.1	NA	NA	NA	inter
CUST_27224_PI429285431	2.5684242	A	2.6386282	A	0.952503302625407	0	lncRNA	28768-1_{1..349}	n324358|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042486|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042486|-1.0028100|-0.2911410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324358|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042486|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042486|-1.0028100|-0.2911410	chr6	142614676	142615024	-	NA	NA	NA	NA	GPR126	NA	chr6:142623056-142632462	inter
CUST_44159_PI429285431	4.748771	P	4.533734	P	1.16073368269534	0	lncRNA	48820-1_{1..3000}	"gi|310119204|ref|XR_110002.1| PREDICTED: Homo sapiens uncharacterized LOC100506651 (LOC100506651), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119204|ref|XR_110002.1| PREDICTED: Homo sapiens uncharacterized LOC100506651 (LOC100506651), misc_RNA"	NA	NA	NA	NA	NA	XR_110002.1	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00"	NA	Unknown
CUST_26792_PI429285431	0.90160525	A	0.9121411	A	0.992723706618374	0	lncRNA	28299-1_{1..532}	n323855|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057167|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057167|-1.1511400|-0.2642282	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323855|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057167|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057167|-1.1511400|-0.2642282	chrX	 70901762	 70902293	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31506_PI429285431	0.91424817	A	0.91146	A	1.00193448087296	0	lncRNA	33267-1_{1..1280}	n337990|BC016787|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|376|NULL|-1.0083200|-0.3085869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337990|BC016787|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|376|NULL|-1.0083200|-0.3085869	chr1	 68962358	 68963637	+	NA	NA	NA	NA	DEPDC1	NA	chr1:68952358-68962799	inner
CUST_16015_PI429285431	0.9133705	A	2.078092	A	0.4460503576251	0	lncRNA	17710-2_{3001..5670}	lnc-GPR31-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR31-1:1	chr6	167656577	167659246	-	lnc-GPR31-1	lnc-GPR31-1:1	XLOC_005921	linc-GPR31-2	UNC93A	NA	chr6:167643577-167665400	inter
CUST_24267_PI429285431	3.8980258	P	4.085756	P	0.877985975388727	0	lncRNA	25818-1_{1..483}	lnc-SH2D7-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SH2D7-3:1	chr15	 78287362	 78287844	+	lnc-SH2D7-3	lnc-SH2D7-3:1	ENSG00000259792.1	RP11-114H24.6	TBC1D2B	NA	chr15:78287327-78297631	inner
CUST_34286_PI429285431	0.918024	A	0.9212586	A	0.997760457655197	0	lncRNA	35784-1_{1..1715}	n341145|AK094519|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3611|NULL|-0.7926830|-0.4652778	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341145|AK094519|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3611|NULL|-0.7926830|-0.4652778	chr11	125797010	125798724	+	NA	NA	NA	NA	DDX25	NA	chr11:125787010-125793005	inter
CUST_7817_PI429285431	2.2488072	A	3.0668662	P	0.567204545775987	0	lncRNA	9441-1_{1..1521}	lnc-ERV3-1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERV3-1-1:1	chr7	 64541129	 64542649	-	lnc-ERV3-1-1	lnc-ERV3-1-1:1	ENSG00000245043	AC073210.1	NA	"hg19_refFlat_SUMF2:range=chr7:56131948-561475645'pad=0,hg19_refFlat_SUMF2:range=chr7:56131948-561475645'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CCT6A:range=chr7:56119542-561307785'pad=0,hg19_refFlat_CCT6A:range=chr7:56119542-561307785'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SUMF2:range=chr7:56131948-561473055'pad=0,hg19_refFlat_SUMF2:range=chr7:56131948-561473055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CCT6B:range=chr17:33255067-332884125'pad=0,hg19_refFlat_CCT6B:range=chr17:33255067-332884125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00"	NA	inter
CUST_11914_PI429285431	9.382445	P	9.513215	P	0.913343847199742	0	lncRNA	13495-1_{1..2198}	lnc-BNIP1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BNIP1-3:3	chr5	172896472	172898669	+	lnc-BNIP1-3	lnc-BNIP1-3:3	XLOC_004640	linc-CPEB4-5	NA	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-63.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60"	NA	inter
LNCA_21_P0014149	0.96603566	A	3.598652	P	0.161251407676592	0	lncRNA	XR_108604	XR_108604	XR_108604	NA	NA	MAST4-AS1	MAST4 antisense RNA 1 (non-protein coding)	ENST00000451496	THC2645298	NA	"PREDICTED: Homo sapiens MAST4 antisense RNA 1 (non-protein coding) (MAST4-AS1), miscRNA [XR_108604]"	chr5:66297521-66297462	hs|5q12.3	Agilent_HUMAN_G3V2	XR_108604	XR_108604	chr5	 66297462	 66297521	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005524	1.2495232	A	0.9288851	A	1.24888280414941	0	lncRNA	TCONS_00013938	NA	NA	NA	NA	XLOC_006578	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006578), lincRNA [TCONS_00013938]"	chr7:117809294-117809235	hs|7q31.31	Agilent_HUMAN_G3V2	TCONS_00013938	TCONS_00013938	chr7	117809235	117809294	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19365_PI429285431	0.91327965	A	1.2590643	A	0.786879893555525	0	lncRNA	21028-1_{1..461}	lnc-C9orf66-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C9orf66-2:1	chr9	   456201	   456661	-	lnc-C9orf66-2	lnc-C9orf66-2:1	ENSG00000227155.1	RP11-165F24.3	DOCK8	NA	chr9:446201-465259	inner
CUST_37512_PI429285431	1.0891716	A	0.9148469	A	1.12843608022037	0	lncRNA	38616-1_{1..3000}	n345986|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1535|NULL|-1.4952600|-0.2737443	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345986|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1535|NULL|-1.4952600|-0.2737443	chr15	 67277899	 67280898	-	NA	NA	NA	NA	SMAD3	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20chr15:67358195-67361569"	NA	inter
CUST_39006_PI429285431	7.313746	P	7.160227	P	1.11227922064656	0	lncRNA	39986-1_{1..2581}	n385307|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003whg.2||-0.6243310|-0.1659141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385307|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003whg.2||-0.6243310|-0.1659141	chr7	150097789	150100369	+	NA	NA	NA	NA	ZNF775	NA	chr7:150087789-150095719	inter
CUST_41612_PI429285431	7.2018785	P	5.382443	P	3.52943071370895	0	lncRNA	42983-1_{1..92}	ENST00000385114 ncrna:miRNA chromosome:GRCh37:4:136292745:136292836:-1 gene:ENSG00000207849 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385114 ncrna:miRNA chromosome:GRCh37:4:136292745:136292836:-1 gene:ENSG00000207849 gene_biotype:miRNA transcript_biotype:miRNA	chr4	136292745	136292836	-	ENSG00000207849	ENST00000385114	NA	NA	NA	NA	NA	inter
CUST_19530_PI429285431	1.0895604	A	0.9007758	A	1.1398030829402	0	lncRNA	21186-1_{1..558}	lnc-AC110373.1-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-AC110373.1-6:4	chr4	121337705	121338262	+	lnc-AC110373.1-6	lnc-AC110373.1-6:4	ENSG00000250938.1	RP11-679C8.2	NA	NA	NA	inter
CUST_14932_PI429285431	4.010314	P	3.7737813	P	1.17815773166654	0	lncRNA	16595-1_{1..282}	lnc-DHX37-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-5:3	chr12	126650625	126650906	-	lnc-DHX37-5	lnc-DHX37-5:3	XLOC_010240	linc-DHX37-7	NA	NA	NA	inter
CUST_30941_PI429285431	7.952006	P	8.258522	P	0.808592092398809	0	lncRNA	32729-1_{1..508}	n337037|DQ108407|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341873|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341873|1.1342300|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337037|DQ108407|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341873|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341873|1.1342300|-1.0000000	chr21	 28217220	 28217727	-	NA	NA	NA	NA	ADAMTS1	NA	chr21:28208606-28217728	inner
CUST_43699_PI429285431	6.38345	P	6.7999945	P	0.749216979056855	0	lncRNA	48448-1_{1..650}	"gi|375268764|ref|NR_046326.1| Homo sapiens KDM5B antisense RNA 1 (head to head) (KDM5B-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|375268764|ref|NR_046326.1| Homo sapiens KDM5B antisense RNA 1 (head to head) (KDM5B-AS1), transcript variant 2, non-coding RNA"	Chr1	202780074	202780723	+	100506696	NR_046326.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0012621	1.2343147	A	0.883552	A	1.2752346189578	0	lncRNA	TCONS_l2_00020806	NA	NA	NA	NA	XLOC_l2_010875	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010875), lincRNA [TCONS_l2_00020806]"	chr4:147150164-147150223	hs|4q31.22	Agilent_HUMAN_G3V2	TCONS_l2_00020806	TCONS_l2_00020806	chr4	147150164	147150223	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22636_PI429285431	5.844286	P	6.391241	P	0.684463255732876	0	lncRNA	24222-1_{1..301}	lnc-PKLR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PKLR-1:1	chr1	155280333	155280633	-	lnc-PKLR-1	lnc-PKLR-1:1	ENSG00000229691.1	RP11-21N7.2	FDPS	"hg19_refFlat_FDPS:range=chr1:155279581-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155279581-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_FDPS:range=chr1:155279856-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155279856-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30chr1:155278539-155290381"	NA	inner
CUST_18879_PI429285431	6.680298	P	6.6369286	P	1.03051778244514	0	lncRNA	20573-1_{1..420}	lnc-ARHGEF40-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ARHGEF40-1:1	chr14	 21560398	 21560817	+	lnc-ARHGEF40-1	lnc-ARHGEF40-1:1	ENSG00000258714	RP11-998D10.7	ZNF219	"hg19_refFlat_ZNF219:range=chr14:21558695-215617505'pad=0,hg19_refFlat_ZNF219:range=chr14:21558695-215617505'pad=0 3'pad=0 strand=- repeatMasking=none,-107.70chr14:21558205-21570491"	NA	inner
LNCA_21_P0009908	0.8745173	A	0.8760729	A	0.998922321359087	0	lncRNA	ENST00000431460	NA	NA	NA	NA	XLOC_013787	NA	ENST00000431460	THC2669107	NA	"BROAD Institute lincRNA (XLOC_013787), lincRNA [TCONS_00028062]"	chr20:48657346-48657287	hs|20q13.13	Agilent_HUMAN_G3V2	ENST00000431460	ENST00000431460	chr20	 48657287	 48657346	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24601_PI429285431	8.190456	P	8.244537	P	0.963207813274797	0	lncRNA	26150-1_{1..383}	lnc-CXADR-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CXADR-1:2	chr21	 19182812	 19183194	+	lnc-CXADR-1	lnc-CXADR-1:2	ENSG00000244676.1	AL109761.5	C21orf91	NA	chr21:19172812-19191703	inner
LNCA_21_P0001779	1.503523	A	0.9831842	A	1.43429203512174	0	lncRNA	XR_109926	XR_109926	XR_109926	NA	Hs.679790	LOC100506286	uncharacterized LOC100506286	NA	THC2601399	NA	"PREDICTED: Homo sapiens hypothetical LOC100506286 (LOC100506286), miscRNA [XR_109926]"	chr2:101771422-101771481	hs|2q11.2	Agilent_HUMAN_G3V2	XR_109926	XR_109926	chr2	101771422	101771481	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011687	4.554638	P	3.5138557	P	2.05734294313692	0	lncRNA	TCONS_l2_00012429	NA	NA	NA	NA	XLOC_l2_006670	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006670), lincRNA [TCONS_l2_00012429]"	chr19:24015723-24047875	hs|19p12	Agilent_HUMAN_G3V2	TCONS_l2_00012429	TCONS_l2_00012429	chr19	 24015723	 24047875	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38279_PI429285431	0.8774304	A	0.87360996	A	1.00265163660045	0	lncRNA	39334-1_{1..1634}	n381896|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001syr.2||-0.5240780|-0.3366644	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381896|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001syr.2||-0.5240780|-0.3366644	chr12	 78883658	 78885291	+	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20"	NA	inter
CUST_48497_PI429285431	0.8879035	A	0.87949735	A	1.00584370740138	0	lncRNA	52350-1_{1..2901}	hg19_lincRNAsTranscripts_TCONS_l2_00000939 range=chr1:247337101-247349185 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000939 range=chr1:247337101-247349185 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	247337101	247340001	+	NA	NA	NA	NA	ZNF124	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_PEX5:range=chr12:7342974-73628195'pad=0,hg19_refFlat_PEX5:range=chr12:7342974-73628195'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60chr1:247327101-247335318"	NA	inter
CUST_8882_PI429285431	6.023985	P	3.929957	P	4.26938421208138	0	lncRNA	10419-1_{1..1941}	lnc-XRN2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-XRN2-2:2	chr20	 21227117	 21229057	+	lnc-XRN2-2	lnc-XRN2-2:2	ENSG00000088970	PLK1S1	PLK1S1	NA	chr20:21217117-21227260	inner
LNCA_21_P0014628	6.0223174	P	6.2001925	P	0.884004059591627	0	lncRNA	XR_110793	XR_110793	XR_110793	NA	NA	LOC100507284	uncharacterized LOC100507284	NA	THC2727058	NA	"PREDICTED: Homo sapiens hypothetical LOC100507284 (LOC100507284), miscRNA [XR_110793]"	chr9:46340572-46340631	hs|9p11.2	Agilent_HUMAN_G3V2	XR_110793	XR_110793	chr9	 46340572	 46340631	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38918_PI429285431	0.8849694	A	1.9765344	A	0.469252065346292	0	lncRNA	39907-1_{1..2629}	n385006|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qac.2||-0.2805930|-0.3049518	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n385006|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qac.2||-0.2805930|-0.3049518	chr6	126039387	126042015	-	NA	NA	NA	NA	HEY2	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-55.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.82;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70chr6:126070732-126080336"	NA	inter
CUST_7499_PI429285431	1.8435816	A	1.1302396	A	1.63959784626704	0	lncRNA	9139-1_{1..658}	lnc-CRYBA4-1:32	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:32	chr22	 27172790	 27173447	+	lnc-CRYBA4-1	lnc-CRYBA4-1:32	ENSG00000244625	XLOC_014192	NA	NA	NA	inter
CUST_41948_PI429285431	5.8178196	P	5.4709616	P	1.27178782245056	0	lncRNA	43712-1_{1..79}	ENST00000362237 ncrna:miRNA chromosome:GRCh37:14:101531637:101531715:1 gene:ENSG00000199107 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362237 ncrna:miRNA chromosome:GRCh37:14:101531637:101531715:1 gene:ENSG00000199107 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101531637	101531715	+	ENSG00000199107	ENST00000362237	NA	NA	NA	NA	NA	inter
LNCA_21_P0012265	5.407225	P	5.4811125	P	0.950074465898089	0	lncRNA	TCONS_l2_00017669	NA	NA	NA	NA	XLOC_l2_009332	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009332), lincRNA [TCONS_l2_00017669]"	chr22:25862537-25862596	hs|22q11.23	Agilent_HUMAN_G3V2	TCONS_l2_00017669	TCONS_l2_00017669	chr22	 25862537	 25862596	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44477_PI429285431	5.512047	P	6.2393637	P	0.604026311458241	0	lncRNA	49081-1_{1..3000}	"gi|397139081|ref|XR_108569.2| PREDICTED: Homo sapiens uncharacterized LOC100288152 (LOC100288152), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139081|ref|XR_108569.2| PREDICTED: Homo sapiens uncharacterized LOC100288152 (LOC100288152), misc_RNA"	Chr5	   477404	   480403	+	100288152	XR_108569.3	NA	NA	NA	"hg19_refFlat_SLC9A3:range=chr5:473494-5244375'pad=0,hg19_refFlat_SLC9A3:range=chr5:473494-5244375'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90"	NA	inter
LNCA_21_P0008472	0.87577766	A	0.8744403	A	1.00092741709893	0	lncRNA	TCONS_00022823	NA	NA	NA	NA	XLOC_011095	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011095), lincRNA [TCONS_00022823]"	chr14:87869402-87869343	hs|14q31.3	Agilent_HUMAN_G3V2	TCONS_00022823	TCONS_00022823	chr14	 87869343	 87869402	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20067_PI429285431	0.89854914	A	0.9087226	A	0.992973099817042	0	lncRNA	21718-1_{1..820}	lnc-SGSH-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SGSH-1:2	chr17	 78179324	 78180143	-	lnc-SGSH-1	lnc-SGSH-1:2	ENSG00000262580.1	RP11-334C17.5	CARD14	"hg19_refFlat_CARD14:range=chr17:78155238-781821445'pad=0,hg19_refFlat_CARD14:range=chr17:78155238-781821445'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.60;hg19_refFlat_CARD14:range=chr17:78155238-781762235'pad=0,hg19_refFlat_CARD14:range=chr17:78155238-781762235'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20chr17:78169324-78182851"	NA	inner
CUST_36311_PI429285431	0.8892137	A	0.88366026	A	1.00385676954649	0	lncRNA	37543-1_{1..2013}	n344838|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_387|NULL|-1.2992000|-0.2997005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344838|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_387|NULL|-1.2992000|-0.2997005	chr5	 95933289	 95935301	+	NA	NA	NA	NA	NA	"hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60"	NA	inter
LNCA_21_P0005996	0.8747368	A	0.87499034	A	0.999824274905304	0	lncRNA	ENST00000445631	NA	NA	NA	NA	XLOC_007267	NA	ENST00000445631	NA	NA	"BROAD Institute lincRNA (XLOC_007267), lincRNA [TCONS_00015640]"	chr9:2541575-2541634	hs|9p24.2	Agilent_HUMAN_G3V2	ENST00000445631	ENST00000445631	chr9	  2541575	  2541634	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29145_PI429285431	7.45615	P	7.651322	P	0.87346875361536	0	lncRNA	30888-1_{1..446}	n326655|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000010557|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000010557|-1.1220900|-0.2124944	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326655|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000010557|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000010557|-1.1220900|-0.2124944	chr1	 31070108	 31070553	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8389_PI429285431	3.3192542	P	3.4290624	P	0.926711255912169	0	lncRNA	9967-1_{1..984}	lnc-AC009336.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC009336.1-2:2	chr2	177053147	177054130	-	lnc-AC009336.1-2	lnc-AC009336.1-2:2	ENSG00000224189	AC009336.23	HOXD1	NA	chr2:177053307-177055635	inter
CUST_49841_PI429285431	5.044703	P	4.379855	P	1.58540122912939	0	lncRNA	53599-1_{1..1111}	hg19_lincRNAsTranscripts_TCONS_l2_00026650 range=chr7:65866734-65874283 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026650 range=chr7:65866734-65874283 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 65866734	 65867844	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22580_PI429285431	0.99822986	A	1.7253364	A	0.604114307474319	0	lncRNA	24167-1_{1..3000}	lnc-IL17B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-IL17B-2:1	chr5	148880578	148883577	-	lnc-IL17B-2	lnc-IL17B-2:1	ENSG00000230551.3	CTB-89H12.4	CSNK1A1	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70chr5:148874845-148894233"	NA	inner
CUST_1070_PI429285431	4.310331	P	4.205686	P	1.07522977906873	0	lncRNA	1059-1_{1..2213}	"transcript_id ""ENST00000375987.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000375987.3"" | genecode_v17"	chr2	129999746	130001958	-	ENSG00000204460.3	ENST00000375987.3	AC079586.1	AC079586.1-001	NA	NA	NA	inter
CUST_801_PI429285431	0.8993899	A	0.90768474	A	0.994266952042529	0	lncRNA	794-1_{1..494}	"transcript_id ""ENST00000451476.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451476.1"" | genecode_v17"	chr2	 21540532	 21541025	+	ENSG00000231204.1	ENST00000451476.1	AC011752.1	AC011752.1-001	NA	NA	NA	inter
LNCA_21_P0005857	0.9108167	A	1.9542379	A	0.485175565456025	0	lncRNA	TCONS_00015038	NA	NA	NA	NA	XLOC_007119	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007119), lincRNA [TCONS_00015038]"	chr8:71440375-71440316	hs|8q13.3	Agilent_HUMAN_G3V2	TCONS_00015038	TCONS_00015038	chr8	 71440316	 71440375	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7149_PI429285431	2.2060344	A	1.6164588	A	1.50480401159487	0	lncRNA	7086-1_{1..659}	"transcript_id ""ENST00000330337.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000330337.2"" | genecode_v17"	chrY	 23745486	 23746144	-	ENSG00000184991.2	ENST00000330337.2	TTTY13	TTTY13-001	NA	NA	NA	inter
CUST_6448_PI429285431	1.0587811	A	0.9038958	A	1.11333310029564	0	lncRNA	6389-1_{1..447}	"transcript_id ""ENST00000592644.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592644.1"" | genecode_v17"	chr19	 32083187	 32083633	+	ENSG00000267465.1	ENST00000592644.1	AC011525.4	AC011525.4-001	THEG5	NA	chr19:32083187-32083945	inner
LNCA_21_P0008044	3.8745153	P	5.6272435	P	0.296740099212538	0	lncRNA	XR_132736	XR_132736	XR_132736	NA	Hs.729493	LOC440132	hCG1815504	ENST00000440633	THC2652493	NA	"PREDICTED: Homo sapiens hCG1815504 (LOC440132), miscRNA [XR_132736]"	chr13:31456749-31457242	hs|13q12.3	Agilent_HUMAN_G3V2	XR_132736	XR_132736	chr13	 31456749	 31457242	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50094_PI429285431	5.2197647	P	5.324189	P	0.930176050509558	0	lncRNA	53827-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00028016 range=chr8:144868909-144872708 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028016 range=chr8:144868909-144872708 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	144868909	144871908	+	NA	NA	NA	NA	SCRIB	NA	chr8:144873090-144882708	inter
CUST_5692_PI429285431	2.4518728	A	2.966868	A	0.699795261087063	0	lncRNA	5616-1_{1..1326}	"transcript_id ""ENST00000378340.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000378340.1"" | genecode_v17"	chr16	 89232791	 89234116	+	ENSG00000205015.1	ENST00000378340.1	RP11-46C24.3	RP11-46C24.3-001	CDH15	NA	chr16:89238163-89245555	inter
LNCA_21_P0001399	0.91099787	A	1.2608428	A	0.784668434497026	0	lncRNA	TCONS_00001220	NA	NA	NA	NA	XLOC_000493	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000493), lincRNA [TCONS_00001220]"	chr1:184748734-184748793	hs|1q25.3	Agilent_HUMAN_G3V2	TCONS_00001220	TCONS_00001220	chr1	184748734	184748793	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39020_PI429285431	7.245858	P	6.8999734	P	1.27093002458328	0	lncRNA	40000-1_{1..2432}	n385358|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wvw.1||2.8550900|-0.1792216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n385358|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wvw.1||2.8550900|-0.1792216	chr8	 12294625	 12297056	+	NA	NA	NA	NA	LOC100127885	NA	chr8:12295164-12334631	inter
CUST_32032_PI429285431	7.572648	P	5.112409	P	5.5030788490677	0	lncRNA	33752-1_{1..2280}	n338598|AK095500|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1004|NULL|-1.2666000|-0.2684392	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338598|AK095500|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1004|NULL|-1.2666000|-0.2684392	chr1	245870453	245872732	+	NA	NA	NA	NA	KIF26B	NA	chr1:245860453-245866428	inter
CUST_48429_PI429285431	0.8927992	A	2.5395145	A	0.319366457038765	0	lncRNA	52281-1_{1..251}	hg19_lincRNAsTranscripts_TCONS_l2_00001518 range=chr1:149691691-149698538 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001518 range=chr1:149691691-149698538 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	149691691	149691941	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7837_PI429285431	1.4823921	A	1.9398161	A	0.728285486464095	0	lncRNA	9461-1_{1..504}	lnc-CYB5R2-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYB5R2-3:4	chr11	  7486984	  7487487	-	lnc-CYB5R2-3	lnc-CYB5R2-3:4	ENSG00000251364	ENSG00000251364.2	SYT9	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20chr11:7476984-7490276"	NA	inner
CUST_42144_PI429285431	5.0157237	P	5.2472157	P	0.85175357337035	0	lncRNA	44168-1_{1..76}	ENST00000581190 ncrna:miRNA chromosome:GRCh37:14:67908572:67908647:-1 gene:ENSG00000265993 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581190 ncrna:miRNA chromosome:GRCh37:14:67908572:67908647:-1 gene:ENSG00000265993 gene_biotype:miRNA transcript_biotype:miRNA	chr14	 67908572	 67908647	-	ENSG00000265993	ENST00000581190	NA	NA	NA	NA	NA	inter
CUST_26227_PI429285431	2.2908435	A	1.3341877	A	1.94080584439548	0	lncRNA	27734-1_{1..545}	lnc-GPER-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPER-3:3	chr7	  1203797	  1204341	+	lnc-GPER-3	lnc-GPER-3:3	ENSG00000229043.1	AC091729.9	ZFAND2A	NA	chr7:1193797-1199855	inter
CUST_25152_PI429285431	0.9081611	A	0.9208746	A	0.991226388064918	0	lncRNA	26690-1_{1..487}	lnc-C8orf59-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C8orf59-2:2	chr8	 86089066	 86089552	-	lnc-C8orf59-2	lnc-C8orf59-2:2	ENSG00000260493.1	RP11-219B4.7	E2F5	NA	chr8:86089619-86099276	inter
CUST_2168_PI429285431	1.3266354	A	0.9131087	A	1.33193778915814	0	lncRNA	2159-2_{3001..4069}	"transcript_id ""ENST00000510444.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510444.1"" | genecode_v17"	chr5	 57189154	 57190222	-	ENSG00000249584.1	ENST00000510444.1	RP11-478P10.1	RP11-478P10.1-001	NA	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-60.80"	NA	inter
LNCA_21_P0001682	0.8839618	A	0.8956205	A	0.991951370041975	0	lncRNA	TCONS_00002046	NA	NA	NA	NA	XLOC_000221	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000221), lincRNA [TCONS_00002046]"	chr1:59615661-59615720	hs|1p32.1	Agilent_HUMAN_G3V2	TCONS_00002046	TCONS_00002046	chr1	 59615661	 59615720	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8259_PI429285431	2.0706532	A	1.8331418	A	1.17895724517216	0	lncRNA	9848-1_{1..2012}	lnc-LARP1B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LARP1B-1:3	chr4	129439911	129441922	+	lnc-LARP1B-1	lnc-LARP1B-1:3	ENSG00000251432	RP11-420A23.1	NA	NA	NA	inter
CUST_48421_PI429285431	11.627056	P	11.582495	P	1.03136929452206	0	lncRNA	52273-1_{1..623}	hg19_lincRNAsTranscripts_TCONS_l2_00000583 range=chr1:148932631-148951577 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000583 range=chr1:148932631-148951577 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	148932631	148933253	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21050_PI429285431	6.162012	P	5.893298	P	1.20473346484585	0	lncRNA	22677-1_{1..608}	lnc-MANBA-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MANBA-1:3	chr4	103352219	103352826	-	lnc-MANBA-1	lnc-MANBA-1:3	ENSG00000248161.1	RP11-499E18.1	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-96.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20"	NA	inter
CUST_32769_PI429285431	1.1904725	A	1.3043562	A	0.924097063696698	0	lncRNA	34405-1_{1..3000}	n339408|CR627153|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1840|NULL|-1.0581700|-0.4146319	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339408|CR627153|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1840|NULL|-1.0581700|-0.4146319	chr3	105565134	105568133	-	NA	NA	NA	NA	CBLB	NA	chr3:105555134-105579968	inner
CUST_16966_PI429285431	0.91182125	A	1.4216647	A	0.702298641698831	0	lncRNA	18678-1_{1..2200}	lnc-MGAT1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MGAT1-2:3	chr5	180257708	180259907	-	lnc-MGAT1-2	lnc-MGAT1-2:3	XLOC_005110	linc-MGAT1-2	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10"	NA	inter
CUST_47329_PI429285431	0.90141517	A	0.89516854	A	1.00433922124717	0	lncRNA	51385-2_{3001..3610}	"gi|284795360|ref|NR_033263.1| Homo sapiens C20orf166 antisense RNA 1 (C20orf166-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|284795360|ref|NR_033263.1| Homo sapiens C20orf166 antisense RNA 1 (C20orf166-AS1), non-coding RNA"	NW_003571063.2	    89588	    90197	-	253868	NR_033263.1	NA	NA	NA	"hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80"	NA	Unknown
CUST_49531_PI429285431	4.1545124	P	4.7831383	P	0.646792161521779	0	lncRNA	53323-1_{1..731}	hg19_lincRNAsTranscripts_TCONS_l2_00024781 range=chr6:48180919-48181910 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024781 range=chr6:48180919-48181910 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 48180919	 48181649	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13057_PI429285431	5.3297973	P	5.4221716	P	0.937977811285926	0	lncRNA	14684-1_{1..377}	lnc-UBE3A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBE3A-1:2	chr15	 25823772	 25824148	-	lnc-UBE3A-1	lnc-UBE3A-1:2	XLOC_011405	linc-UBE3A	NA	NA	NA	inter
LNCA_21_P0010528	2.500854	A	1.563391	A	1.91515744378595	0	lncRNA	TCONS_l2_00000272	NA	NA	NA	NA	XLOC_l2_000196	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000196), lincRNA [TCONS_l2_00000272]"	chr1:48562805-48562864	hs|1p33	Agilent_HUMAN_G3V2	TCONS_l2_00000272	TCONS_l2_00000272	chr1	 48562805	 48562864	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33344_PI429285431	2.2778397	A	1.4480042	A	1.77748267738403	0	lncRNA	34926-1_{1..2132}	n340063|AK096743|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2518|NULL|-0.2142900|-0.2400235	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340063|AK096743|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2518|NULL|-0.2142900|-0.2400235	chr10	 73123999	 73126130	+	NA	NA	NA	NA	SLC29A3	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40chr10:73113999-73123147"	NA	inter
CUST_5347_PI429285431	1.7506082	A	0.9070529	A	1.79446688502582	0	lncRNA	5285-1_{1..562}	"transcript_id ""ENST00000558246.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558246.1"" | genecode_v17"	chr15	 96936375	 96936936	-	ENSG00000259542.1	ENST00000558246.1	RP11-522B15.4	RP11-522B15.4-002	NA	NA	NA	inter
CUST_18954_PI429285431	1.4780287	A	1.0988078	A	1.30063928026281	0	lncRNA	20645-1_{1..2246}	lnc-NMNAT2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NMNAT2-2:1	chr1	183439155	183441400	-	lnc-NMNAT2-2	lnc-NMNAT2-2:1	ENSG00000232860	RP11-74N20.1	SMG7	NA	chr1:183441506-183451400	inter
CUST_49228_PI429285431	0.8945718	A	1.2447963	A	0.784462017054261	0	lncRNA	53048-1_{1..647}	hg19_lincRNAsTranscripts_TCONS_l2_00021477 range=chr4:188454109-188479373 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021477 range=chr4:188454109-188479373 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	188454109	188454755	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42756_PI429285431	8.568467	P	8.529224	P	1.02757450407349	0	lncRNA	45720-1_{1..135}	ENST00000384492 ncrna:snoRNA chromosome:GRCh37:11:82752506:82752640:-1 gene:ENSG00000207221 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384492 ncrna:snoRNA chromosome:GRCh37:11:82752506:82752640:-1 gene:ENSG00000207221 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 82752506	 82752640	-	ENSG00000207221	ENST00000384492	NA	NA	RAB30	NA	chr11:82742506-82762640	inner
CUST_38522_PI429285431	3.786703	P	3.9798055	P	0.874722615767799	0	lncRNA	39532-2_{3001..3580}	n383175|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002hrd.1||6.9942200|-0.1710995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383175|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002hrd.1||6.9942200|-0.1710995	chr17	 37189158	 37189737	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00"	NA	inter
CUST_13142_PI429285431	1.3105834	A	0.88761306	A	1.34068502849488	0	lncRNA	14770-1_{1..309}	lnc-C10orf105-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf105-2:1	chr10	 73156223	 73156531	-	lnc-C10orf105-2	lnc-C10orf105-2:1	XLOC_008848	linc-PCBD1-2	CDH23	NA	chr10:73156691-73166474	inter
CUST_25525_PI429285431	2.408759	A	0.88528776	A	2.87481922689347	0	lncRNA	27055-2_{3001..3145}	lnc-MRC2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRC2-1:3	chr17	 60815492	 60815636	+	lnc-MRC2-1	lnc-MRC2-1:3	ENSG00000265702.1	RP11-156L14.1	10-Mar	"hg19_refFlat_MARCH10:range=chr17:60779064-608790965'pad=0,hg19_refFlat_MARCH10:range=chr17:60779064-608790965'pad=0 3'pad=0 strand=- repeatMasking=none,-95.70chr17:60802492-60825276"	NA	inter
LNCA_21_P0014425	4.1286054	P	4.240137	P	0.925604895529239	0	lncRNA	XR_109716	XR_109716	XR_109716	NA	NA	LOC100506361	uncharacterized LOC100506361	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506361 (LOC100506361), miscRNA [XR_109716]"	chr22:39262275-39262334	hs|22q13.1	Agilent_HUMAN_G3V2	XR_109716	XR_109716	chr22	 39262275	 39262334	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011157	7.92859	M	0.8706906	A	133.241473170908	0	lncRNA	TCONS_l2_00006987	NA	NA	NA	NA	XLOC_l2_003840	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003840), lincRNA [TCONS_l2_00006987]"	chr13:104080119-104080178	hs|13q33.1	Agilent_HUMAN_G3V2	TCONS_l2_00006987	TCONS_l2_00006987	chr13	104080119	104080178	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15085_PI429285431	1.5619721	A	1.3741149	A	1.13907062481707	0	lncRNA	16748-1_{1..810}	lnc-VAV3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VAV3-1:2	chr1	106615580	106616389	-	lnc-VAV3-1	lnc-VAV3-1:2	XLOC_000950	linc-AMY1A-4	NA	NA	NA	inter
CUST_33470_PI429285431	3.855705	P	4.125606	P	0.829376456977077	0	lncRNA	35043-1_{1..981}	n340205|CR610292|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2666|NULL|-1.1360000|-0.2443396	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340205|CR610292|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2666|NULL|-1.1360000|-0.2443396	chr4	120409797	120410777	+	NA	NA	NA	NA	PDE5A	NA	chr4:120415550-120483179	inner
LNCA_21_P0005376	2.280176	A	3.5536735	P	0.413655738097793	0	lncRNA	ENST00000416708	NA	NA	NA	NA	XLOC_006080	NA	ENST00000416708	NA	NA	"BROAD Institute lincRNA (XLOC_006080), lincRNA [TCONS_00013437]"	chr7:46019546-46019605	hs|7p12.3	Agilent_HUMAN_G3V2	ENST00000416708	ENST00000416708	chr7	 46019546	 46019605	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21451_PI429285431	0.8798225	A	0.87453985	A	1.00366836599812	0	lncRNA	23070-1_{1..1031}	lnc-RACGAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RACGAP1-1:1	chr12	 50356450	 50357480	-	lnc-RACGAP1-1	lnc-RACGAP1-1:1	ENSG00000257588.1	RP11-469H8.6	AQP2	NA	chr12:50346450-50352664	inner
CUST_17564_PI429285431	0.8888967	A	0.8960449	A	0.995057499873089	0	lncRNA	19293-1_{1..391}	lnc-UBASH3B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBASH3B-2:2	chr11	122179165	122179555	+	lnc-UBASH3B-2	lnc-UBASH3B-2:2	XLOC_009307	linc-UBASH3B-2	NA	NA	NA	inter
CUST_35332_PI429285431	1.8375567	A	2.3679414	A	0.692370086378662	0	lncRNA	36741-1_{1..1005}	n342370|AF218941|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4862|NULL|5.9795800|-0.0697128	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342370|AF218941|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4862|NULL|5.9795800|-0.0697128	chr1	240256594	240257598	+	NA	NA	NA	NA	FMN2	NA	chr1:240255185-240380293	inner
CUST_46665_PI429285431	7.850493	P	7.71589	P	1.09779068280374	0	lncRNA	50834-2_{3001..4193}	"gi|308736977|ref|NR_036684.1| Homo sapiens carboxylesterase 2 (CES2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|308736977|ref|NR_036684.1| Homo sapiens carboxylesterase 2 (CES2), transcript variant 3, non-coding RNA"	Chr16	 66971374	 66972566	+	8824	NR_036684.1	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-59.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90"	NA	inter
CUST_41596_PI429285431	1.4266698	A	1.1206442	A	1.2362971982858	0	lncRNA	42933-1_{1..86}	ENST00000408598 ncrna:miRNA chromosome:GRCh37:14:101509314:101509399:1 gene:ENSG00000221525 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408598 ncrna:miRNA chromosome:GRCh37:14:101509314:101509399:1 gene:ENSG00000221525 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101509314	101509399	+	ENSG00000221525	ENST00000408598	NA	NA	NA	NA	NA	inter
LNCA_21_P0004777	5.446273	P	5.5023212	P	0.961895317499614	0	lncRNA	BC034632	NA	BC034632	NA	Hs.621262	XLOC_005844	NA	ENST00000447848	THC2605936	NA	"BROAD Institute lincRNA (XLOC_005844), lincRNA [TCONS_00011567]"	chr6:136128345-136128286	hs|6q23.3	Agilent_HUMAN_G3V2	BC034632	BC034632	chr6	136128286	136128345	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008157	0.8717918	A	0.87371683	A	0.998666560704287	0	lncRNA	TCONS_00021992	NA	NA	NA	NA	XLOC_010592	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010592), lincRNA [TCONS_00021992]"	chr13:45948805-45948746	hs|13q14.13	Agilent_HUMAN_G3V2	TCONS_00021992	TCONS_00021992	chr13	 45948746	 45948805	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27464_PI429285431	1.9465289	A	2.8350048	A	0.540184481650718	0	lncRNA	29036-1_{1..2165}	n324642|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000239196|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000239196|-0.9984780|-0.2396978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324642|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000239196|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000239196|-0.9984780|-0.2396978	chr4	  1135159	  1137323	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38963_PI429285431	0.8876884	A	0.9017213	A	0.99032028787468	0	lncRNA	39947-2_{3001..3066}	n385150|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tnf.3||3.6168800|-0.2714561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385150|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tnf.3||3.6168800|-0.2714561	chr7	 45766389	 45766454	-	NA	NA	NA	NA	ADCY1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90chr7:45753389-45762715"	NA	inter
CUST_15013_PI429285431	1.4710051	A	0.90826994	A	1.47706688894646	0	lncRNA	16675-1_{1..585}	lnc-BARHL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BARHL2-2:1	chr1	 90762498	 90763082	-	lnc-BARHL2-2	lnc-BARHL2-2:1	XLOC_000913	linc-GBP5-6	NA	NA	NA	inter
CUST_36677_PI429285431	6.6667094	P	6.8255463	P	0.895746930622211	0	lncRNA	37862-1_{1..532}	n345168|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_717|NULL|-1.2628100|-0.2951547	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345168|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_717|NULL|-1.2628100|-0.2951547	chr12	  8145283	  8145814	-	NA	NA	NA	NA	FOXJ2	"hg19_refFlat_HSPD1:range=chr2:198351770-1983635725'pad=0,hg19_refFlat_HSPD1:range=chr2:198351770-1983635725'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10chr12:8167556-8179776"	NA	inter
CUST_10924_PI429285431	1.7848822	A	0.9266553	A	1.81280896381801	0	lncRNA	12465-1_{1..891}	lnc-TMED5-1:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMED5-1:16	chr1	 93803931	 93804821	-	lnc-TMED5-1	lnc-TMED5-1:16	XLOC_000918	linc-TMED5	DR1	NA	chr1:93811478-93814222	inter
LNCA_21_P0009647	6.0140066	P	6.493184	P	0.717386548937735	0	lncRNA	BC040412	NA	BC040412	NA	NA	XLOC_013035	NA	NA	THC2693062	NA	"BROAD Institute lincRNA (XLOC_013035), lincRNA [TCONS_00026783]"	chr19:31399942-31400001	hs|19q12	Agilent_HUMAN_G3V2	BC040412	BC040412	chr19	 31399942	 31400001	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29526_PI429285431	2.8008728	A	3.4907503	P	0.619906484322754	0	lncRNA	31284-1_{1..397}	n332984|AF116644|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000069980|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000069980|-0.8270420|-0.0947602	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332984|AF116644|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000069980|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000069980|-0.8270420|-0.0947602	chr20	   335295	   335691	+	NA	NA	NA	NA	NRSN2	NA	chr20:327370-335512	inner
CUST_43223_PI429285431	10.438238	P	11.291073	P	0.55369561439243	0	lncRNA	48037-1_{1..2016}	ENST00000587894 havana:sense_intronic chromosome:GRCh37:19:2641836:2643851:-1 gene:ENSG00000267749 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000587894 havana:sense_intronic chromosome:GRCh37:19:2641836:2643851:-1 gene:ENSG00000267749 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	  2641836	  2643851	-	ENSG00000267749	ENST00000587894	NA	NA	GNG7	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-62.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70chr19:2631836-2646281"	NA	inner
CUST_27457_PI429285431	0.9116345	A	2.6870124	A	0.292117784692073	0	lncRNA	29027-1_{1..1832}	n324633|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000216872|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000216872|-1.1799500|-0.4868403	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324633|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000216872|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000216872|-1.1799500|-0.4868403	chr5	 70707368	 70709199	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007917	3.9300508	P	3.9531705	P	0.984102367950966	0	lncRNA	AK123584	NA	AK123584	NA	Hs.648968	XLOC_010706	NA	NA	THC2493038	NA	"BROAD Institute lincRNA (XLOC_010706), lincRNA [TCONS_00021520]"	chr13:100146344-100146285	hs|13q32.3	Agilent_HUMAN_G3V2	AK123584	AK123584	chr13	100146285	100146344	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33815_PI429285431	7.191072	P	5.4162827	P	3.42188031392323	0	lncRNA	35363-2_{3001..5031}	n340600|BC037740|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3062|NULL|-0.9330430|-0.3869879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340600|BC037740|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3062|NULL|-0.9330430|-0.3869879	chr17	 27876904	 27878934	+	NA	NA	NA	NA	TAOK1	NA	chr17:27863904-27878921	inner
CUST_39996_PI429285431	1.1016481	A	1.1750653	A	0.950384228422633	0	lncRNA	40862-1_{1..2495}	n407113|NR_024617|lncRNA|Homosapiens||RefGeneNoncode|NR_024617||-0.0970094|-0.2259595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n407113|NR_024617|lncRNA|Homosapiens||RefGeneNoncode|NR_024617||-0.0970094|-0.2259595	chr5	 59783539	 59786033	+	NA	NA	NA	NA	PDE4D	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20chr5:59773539-59783925"	NA	inner
CUST_36805_PI429285431	5.849122	P	6.0944133	P	0.843645435297994	0	lncRNA	37977-1_{1..1319}	n345284|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_833|NULL|-1.2725900|-0.1871257	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345284|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_833|NULL|-1.2725900|-0.1871257	chr14	102415004	102416322	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00"	NA	inter
CUST_19731_PI429285431	7.4596615	P	7.5551767	P	0.935937955481255	0	lncRNA	21389-1_{1..428}	lnc-CTD-2517M22.16.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2517M22.16.1-2:2	chr8	145665211	145665638	+	lnc-CTD-2517M22.16.1-2	lnc-CTD-2517M22.16.1-2:2	ENSG00000232600.2	AC084125.4	CYHR1	"hg19_refFlat_TONSL:range=chr8:145654526-1456697975'pad=0,hg19_refFlat_TONSL:range=chr8:145654526-1456697975'pad=0 3'pad=0 strand=- repeatMasking=none,-97.40chr8:145675315-145675354"	NA	inner
CUST_45821_PI429285431	4.5278835	P	4.5465374	P	0.987153333828799	0	lncRNA	50155-1_{1..588}	"gi|341915558|ref|XR_132896.1| PREDICTED: Homo sapiens uncharacterized LOC100129473 (LOC100129473), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915558|ref|XR_132896.1| PREDICTED: Homo sapiens uncharacterized LOC100129473 (LOC100129473), misc_RNA"	NA	NA	NA	NA	NA	XR_132896.1	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00320729	6.422228	P	4.8256044	P	3.02434683772583	0	lncRNA	XR_111605	XR_111605	XR_111605	NA	Hs.60257	LOC100509498	uncharacterized LOC100509498	NA	THC2779204	NA	"PREDICTED: Homo sapiens hypothetical LOC100509498 (LOC100509498), miscRNA [XR_111605]"	chr16:80631953-80631894	hs|16q23.2	Agilent_HUMAN_G3V2	XR_111605	XR_111605	chr16	 80631894	 80631953	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12463_PI429285431	0.90076995	A	1.0170801	A	0.922544143164934	0	lncRNA	14075-1_{1..857}	lnc-HEPH-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HEPH-2:1	chrX	 65220264	 65221120	+	lnc-HEPH-2	lnc-HEPH-2:1	XLOC_008003	linc-HEPH-2	NA	NA	NA	inter
CUST_31661_PI429285431	0.89092416	A	0.90608567	A	0.989545870354846	0	lncRNA	33411-2_{3001..4050}	n338184|CR749373|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|575|NULL|0.8612660|-0.3661252	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338184|CR749373|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|575|NULL|0.8612660|-0.3661252	chr1	114423789	114424838	-	NA	NA	NA	NA	BCL2L15	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-12.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10chr1:114419436-114430169"	NA	inner
CUST_39294_PI429285431	6.0601506	P	6.0389338	P	1.01481503575099	0	lncRNA	40263-1_{1..827}	n386301|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gqi.1||-1.1629900|-0.4074020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386301|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gqi.1||-1.1629900|-0.4074020	chr21	 47712921	 47713747	+	NA	NA	NA	NA	YBEY	NA	chr21:47706267-47717665	inner
CUST_21333_PI429285431	6.01326	P	6.0596724	P	0.96834134551259	0	lncRNA	22957-1_{1..462}	lnc-C12orf66-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C12orf66-1:1	chr12	 64541320	 64541781	-	lnc-C12orf66-1	lnc-C12orf66-1:1	ENSG00000255629.1	RP11-196H14.3	SRGAP1	NA	chr12:64531320-64541613	inner
CUST_31793_PI429285431	1.6009364	A	0.9607842	A	1.5584935670458	0	lncRNA	33531-1_{1..1142}	n338333|BC041976|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|727|NULL|-0.9001600|-0.2671297	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338333|BC041976|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|727|NULL|-0.9001600|-0.2671297	chr1	162530016	162531157	-	NA	NA	NA	NA	UAP1	NA	chr1:162531296-162541098	inter
CUST_48178_PI429285431	0.93112165	A	1.0897845	A	0.895855002081241	0	lncRNA	52042-1_{1..585}	"gi|341914308|ref|XR_133259.1| PREDICTED: Homo sapiens uncharacterized LOC100289308 (LOC100289308), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341914308|ref|XR_133259.1| PREDICTED: Homo sapiens uncharacterized LOC100289308 (LOC100289308), misc_RNA"	NA	NA	NA	NA	NA	XR_133259.1	NA	NA	NA	NA	NA	Unknown
CUST_46211_PI429285431	9.175917	P	9.472653	P	0.814092142858877	0	lncRNA	50453-1_{1..1581}	"gi|213385265|ref|NR_024458.1| Homo sapiens TPT1 antisense RNA 1 (TPT1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|213385265|ref|NR_024458.1| Homo sapiens TPT1 antisense RNA 1 (TPT1-AS1), non-coding RNA"	Chr13	 45915480	 45917060	+	100190939	NR_024458.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_RCN1:range=chr11:32112743-321260185'pad=0,hg19_refFlat_RCN1:range=chr11:32112743-321260185'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60"	NA	inter
CUST_46358_PI429285431	1.3905685	A	0.9079964	A	1.39723249447332	0	lncRNA	50580-3_{6001..6403}	"gi|387765979|ref|NR_048573.1| Homo sapiens general transcription factor IIA, 1, 19/37kDa (GTF2A1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|387765979|ref|NR_048573.1| Homo sapiens general transcription factor IIA, 1, 19/37kDa (GTF2A1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_048573.1	NA	NA	NA	NA	NA	Unknown
CUST_15663_PI429285431	1.3560069	A	0.91397536	A	1.35851598391337	0	lncRNA	17351-6_{15001..17889}	lnc-SNURF-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNURF-1:7	chr15	 25280737	 25283625	+	lnc-SNURF-1	lnc-SNURF-1:7	XLOC_011183	linc-GABRA5-7	SNRPN	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40chr15:25255737-25291705"	NA	inter
LNCA_19_P00316663	6.127906	P	6.2600627	P	0.912466374564211	0	lncRNA	TCONS_00016491	NA	NA	NA	NA	XLOC_007868	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007868), lincRNA [TCONS_00016491]"	chr9:132266188-132266129	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_00016491	TCONS_00016491	chr9	132266129	132266188	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21140_PI429285431	8.308219	P	8.20108	P	1.0770901460917	0	lncRNA	22765-1_{1..789}	lnc-C16orf61-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf61-1:2	chr16	 81069274	 81070062	-	lnc-C16orf61-1	lnc-C16orf61-1:2	ENSG00000260213.1	RP11-303E16.3	CENPN	NA	chr16:81059274-81066712	inter
CUST_25837_PI429285431	4.4250913	P	5.0402923	P	0.652838932001627	0	lncRNA	27358-1_{1..1648}	lnc-DENND2A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-DENND2A-1:1	chr7	140396715	140398362	-	lnc-DENND2A-1	lnc-DENND2A-1:1	ENSG00000240889.1	RP4-726N20.2	ADCK2	"hg19_refFlat_NDUFB2:range=chr7:140396545-1404047345'pad=0,hg19_refFlat_NDUFB2:range=chr7:140396545-1404047345'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30chr7:140386715-140394908"	NA	inner
LNCA_21_P0006867	4.4363008	P	4.612932	P	0.884766581677728	0	lncRNA	TCONS_00018188	NA	NA	NA	NA	XLOC_008473	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008473), lincRNA [TCONS_00018188]"	chr10:44478296-44478355	hs|10q11.21	Agilent_HUMAN_G3V2	TCONS_00018188	TCONS_00018188	chr10	 44478296	 44478355	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22738_PI429285431	1.5392311	A	0.8952869	A	1.56259532171921	0	lncRNA	24321-1_{1..570}	lnc-LRRC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC1-1:1	chr6	 53859588	 53860157	+	lnc-LRRC1-1	lnc-LRRC1-1:1	ENSG00000236740.2	RP11-411K7.1	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10"	NA	inter
CUST_26481_PI429285431	2.9583826	A	2.422363	A	1.44996653153322	0	lncRNA	27989-1_{1..566}	lnc-FAM91A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM91A1-1:2	chr8	124670489	124671054	+	lnc-FAM91A1-1	lnc-FAM91A1-1:2	ENSG00000253286.1	CTD-2552K11.2	KLHL38	NA	chr8:124660489-124665190	inter
CUST_4_PI429201921	7.183733	P	7.580811	P	0.759394786753642	0	lncRNA	4-1_{1..395}	TC16001791.hg.1	TCONS_l2_00010025-XLOC_l2_005407 // Broad TUCP // linc-XYLT1-2 chr16:-:18487031-18487427 // chr16 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr16:-:18487031-18487427	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00010025-XLOC_l2_005407	linc-XYLT1-2	chr16	 18487031	 18487427	-	NA	NA	NA	NA	AQP12B	NA	chr2:241615751-241622317	Unknown
CUST_15602_PI429285431	1.7131068	A	2.8746796	A	0.44702493124119	0	lncRNA	17288-1_{1..247}	lnc-BMP6-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BMP6-8:1	chr6	  8926047	  8926293	+	lnc-BMP6-8	lnc-BMP6-8:1	XLOC_005160	linc-SLC35B3-BP	NA	NA	NA	inter
CUST_10680_PI429285431	5.7255464	P	5.9265513	P	0.86994439800605	0	lncRNA	12213-1_{1..1334}	lnc-ACP1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACP1-3:3	chr2	   209485	   210818	+	lnc-ACP1-3	lnc-ACP1-3:3	XLOC_001300	linc-ACP1	SH3YL1	NA	chr2:218136-220331	inter
CUST_15060_PI429285431	0.8820703	A	0.9006802	A	0.987183440960113	0	lncRNA	16723-1_{1..449}	lnc-CLCN3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLCN3-2:1	chr4	170884286	170884734	+	lnc-CLCN3-2	lnc-CLCN3-2:1	XLOC_003773	linc-GALNTL6-6	NA	NA	NA	inter
LNCA_21_P0001396	0.8756987	A	0.8746055	A	1.00075803566171	0	lncRNA	TCONS_00001216	NA	NA	NA	NA	XLOC_000486	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000486), lincRNA [TCONS_00001216]"	chr1:182683645-182683704	hs|1q25.3	Agilent_HUMAN_G3V2	TCONS_00001216	TCONS_00001216	chr1	182683645	182683704	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42567_PI429285431	12.383122	P	12.014624	P	1.29100805312494	0	lncRNA	45400-1_{1..75}	ENST00000408189 ncrna:snoRNA chromosome:GRCh37:20:2634858:2634932:1 gene:ENSG00000221116 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408189 ncrna:snoRNA chromosome:GRCh37:20:2634858:2634932:1 gene:ENSG00000221116 gene_biotype:snoRNA transcript_biotype:snoRNA	chr20	  2634858	  2634932	+	ENSG00000221116	ENST00000408189	NA	NA	NOP56	NA	chr20:2633254-2639039	inter
CUST_26388_PI429285431	5.3855205	P	5.426136	P	0.972240070105857	0	lncRNA	27894-1_{1..978}	lnc-ERICH1-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ERICH1-7:2	chr8	  1712467	  1713444	-	lnc-ERICH1-7	lnc-ERICH1-7:2	ENSG00000253982.1	CTD-2336O2.1	CLN8	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-24.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20chr8:1711870-1722505"	NA	inner
CUST_38998_PI429285431	8.164796	P	6.3618975	P	3.48920533336431	0	lncRNA	39979-1_{1..809}	n385279|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vpl.1||0.6755180|-0.2362526	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385279|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vpl.1||0.6755180|-0.2362526	chr7	129774729	129775537	+	NA	NA	NA	NA	KLHDC10	NA	chr7:129764729-129775560	inner
CUST_214_PI429285431	0.8797028	A	0.87785506	A	1.00128157628934	0	lncRNA	204-1_{1..623}	"transcript_id ""ENST00000425554.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425554.1"" | genecode_v17"	chr1	 41708045	 41708667	+	ENSG00000235358.1	ENST00000425554.1	RP11-399E6.1	RP11-399E6.1-001	SCMH1	NA	chr1:41698045-41707815	inter
LNCA_21_P0006499	0.8702265	A	0.8699948	A	1.00016061509896	0	lncRNA	TCONS_00017181	NA	NA	NA	NA	XLOC_007993	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007993), lincRNA [TCONS_00017181]"	chrX:56317482-56325706	hs|Xp11.21	Agilent_HUMAN_G3V2	TCONS_00017181	TCONS_00017181	chrX	 56317482	 56325706	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38600_PI429285431	1.3553514	A	2.8159132	A	0.363351608995822	0	lncRNA	39608-2_{3001..3200}	n383702|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tfr.3||2.8907900|-0.1792566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n383702|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tfr.3||2.8907900|-0.1792566	chr2	111135686	111135885	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZBTB45:range=chr19:59025421-590290405'pad=0,hg19_refFlat_ZBTB45:range=chr19:59025421-590290405'pad=0 3'pad=0 strand=- repeatMasking=none,-101.60"	NA	inter
LNCA_21_P0002399	0.9078277	A	2.5505087	A	0.320260771628461	0	lncRNA	TCONS_00004136	NA	NA	NA	NA	XLOC_001979	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001979), lincRNA [TCONS_00004136]"	chr2:9247317-9247258	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_00004136	TCONS_00004136	chr2	  9247258	  9247317	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006137	0.9100145	A	1.0034862	A	0.937264600640122	0	lncRNA	TCONS_00015945	NA	NA	NA	NA	XLOC_007321	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007321), lincRNA [TCONS_00015945]"	chr9:33489790-33489849	hs|9p13.3	Agilent_HUMAN_G3V2	TCONS_00015945	TCONS_00015945	chr9	 33489790	 33489849	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013868	3.833509	P	4.511122	P	0.625198837112857	0	lncRNA	THC2686626	NA	NA	NA	NA	XLOC_l2_015804	NA	NA	THC2686626	NA	"BROAD Institute lincRNA (XLOC_l2_015804), lincRNA [TCONS_l2_00030847]"	NA	NA	Agilent_HUMAN_G3V2	THC2686626	THC2686626	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_981_PI429285431	0.8950286	A	0.90314555	A	0.99438955664567	0	lncRNA	970-1_{1..638}	"transcript_id ""ENST00000422683.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422683.1"" | genecode_v17"	chr2	103726217	103726854	-	ENSG00000229209.1	ENST00000422683.1	AC073987.1	AC073987.1-001	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80"	NA	inter
CUST_45935_PI429285431	9.934517	P	9.388944	P	1.45959994330837	0	lncRNA	50239-2_{3001..3289}	"gi|214010186|ref|NR_024515.1| Homo sapiens amyloid beta (A4) precursor-like protein 2 (APLP2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|214010186|ref|NR_024515.1| Homo sapiens amyloid beta (A4) precursor-like protein 2 (APLP2), transcript variant 5, non-coding RNA"	Chr11	129942716	129943004	+	334	NR_024515.1	NA	NA	NA	NA	NA	inter
CUST_270_PI429285431	1.1717869	A	0.9058044	A	1.20245466294367	0	lncRNA	262-1_{1..381}	"transcript_id ""ENST00000444349.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444349.1"" | genecode_v17"	chr1	 65445260	 65445640	-	ENSG00000226891.2	ENST00000444349.1	RP11-182I10.3	RP11-182I10.3-003	NA	NA	NA	inter
CUST_109_PI429201921	2.9500904	A	3.4939804	A	0.685918941007367	0	lncRNA	110-1_{1..3000}	TC15002062.hg.1	TCONS_l2_00009397-XLOC_l2_004555 // Broad TUCP // linc-OR4M2-4 chr15:+:20723928-20727148 // chr15 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00008401-XLOC_l2_004555 // Broad TUCP // linc-OR4M2-4 chr15:+:20724219-20727146 // chr15 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr15:+:20723928-20727148	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00009397-XLOC_l2_004555	linc-OR4M2-4	chr15	 20723928	 20727148	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44269_PI429285431	2.1746848	A	3.9892435	A	0.284291190663068	0	lncRNA	48909-1_{1..2586}	"gi|310119301|ref|XR_108503.1| PREDICTED: Homo sapiens uncharacterized LOC100507447 (LOC100507447), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310119301|ref|XR_108503.1| PREDICTED: Homo sapiens uncharacterized LOC100507447 (LOC100507447), misc_RNA"	NA	NA	NA	NA	NA	XR_108503.1	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-17.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20"	NA	Unknown
LNCA_21_P0007069	0.9084445	A	0.92933637	A	0.985623206634974	0	lncRNA	TCONS_00018782	NA	NA	NA	NA	XLOC_008554	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008554), lincRNA [TCONS_00018782]"	chr10:91663049-91674400	hs|10q23.31	Agilent_HUMAN_G3V2	TCONS_00018782	TCONS_00018782	chr10	 91663049	 91674400	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51737_PI429285431	1.000248	A	1.2410027	A	0.846302480335038	0	lncRNA	55290-1_{1..796}	hg19_lincRNAsTranscripts_TCONS_l2_00012072 range=chr18:36872667-36920546 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012072 range=chr18:36872667-36920546 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 36872667	 36873462	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001488	3.745514	P	3.0850306	P	1.5806121465276	0	lncRNA	TCONS_00001448	NA	NA	NA	NA	XLOC_000771	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000771), lincRNA [TCONS_00001448]"	chr1:31934229-31934170	hs|1p35.2	Agilent_HUMAN_G3V2	TCONS_00001448	TCONS_00001448	chr1	 31934170	 31934229	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22159_PI429285431	3.3605306	A	3.6613958	P	0.811765425742993	0	lncRNA	23761-1_{1..709}	lnc-C17orf58-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf58-2:1	chr17	 65947309	 65948017	-	lnc-C17orf58-2	lnc-C17orf58-2:1	ENSG00000266717.1	RP11-855A2.3	BPTF	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80chr17:65937309-65957862"	NA	inner
CUST_5240_PI429285431	3.55963	P	3.1387012	P	1.33878918331814	0	lncRNA	5181-1_{1..519}	"transcript_id ""ENST00000562031.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562031.1"" | genecode_v17"	chr15	 74060555	 74061073	+	ENSG00000260469.1	ENST00000562031.1	RP11-8P11.3	RP11-8P11.3-001	NA	NA	NA	inter
CUST_25640_PI429285431	5.8421946	P	6.5051565	P	0.631580310048697	0	lncRNA	27170-1_{1..444}	lnc-DGAT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DGAT1-1:1	chr8	145538589	145539032	-	lnc-DGAT1-1	lnc-DGAT1-1:1	ENSG00000254690.1	GS1-393G12.12	DGAT1	NA	chr8:145538247-145548801	inner
LNCA_21_P0011134	2.1009867	A	0.90391326	A	2.29274107984943	0	lncRNA	TCONS_l2_00006753	NA	NA	NA	NA	XLOC_l2_003647	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003647), lincRNA [TCONS_l2_00006753]"	chr13:25163360-25163419	hs|13q12.12	Agilent_HUMAN_G3V2	TCONS_l2_00006753	TCONS_l2_00006753	chr13	 25163360	 25163419	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003290	15.61735	P	15.13527	P	1.39675598291771	0	lncRNA	TCONS_00007198	NA	NA	NA	NA	XLOC_003181	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003181), lincRNA [TCONS_00007198]"	chr3:96336826-96336533	hs|3q11.2	Agilent_HUMAN_G3V2	TCONS_00007198	TCONS_00007198	chr3	 96336533	 96336826	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8410_PI429285431	2.7844841	A	2.1257722	A	1.57867248780975	0	lncRNA	9987-1_{1..3000}	lnc-KIF13B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIF13B-2:1	chr8	 28916370	 28919369	-	lnc-KIF13B-2	lnc-KIF13B-2:1	ENSG00000247743	AC091558.1	HMBOX1	NA	chr8:28906370-28910242	inter
CUST_47630_PI429285431	2.6261811	A	3.2258215	P	0.659918423334101	0	lncRNA	51620-1_{1..887}	"gi|397139819|ref|XR_109768.2| PREDICTED: Homo sapiens uncharacterized LOC100506901, transcript variant 1 (LOC100506901), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139819|ref|XR_109768.2| PREDICTED: Homo sapiens uncharacterized LOC100506901, transcript variant 1 (LOC100506901), misc_RNA"	NA	NA	NA	NA	NA	XR_109768.2	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003182	0.8816314	A	0.89156675	A	0.99313699886054	0	lncRNA	TCONS_00006678	NA	NA	NA	NA	XLOC_003273	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003273), lincRNA [TCONS_00006678]"	chr3:147450166-147450107	hs|3q24	Agilent_HUMAN_G3V2	TCONS_00006678	TCONS_00006678	chr3	147450107	147450166	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009976	6.809177	P	6.903266	P	0.936863649878317	0	lncRNA	TCONS_00028224	NA	NA	NA	NA	XLOC_013567	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013567), lincRNA [TCONS_00028224]"	chr20:51314855-51314914	hs|20q13.2	Agilent_HUMAN_G3V2	TCONS_00028224	TCONS_00028224	chr20	 51314855	 51314914	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32695_PI429285431	7.9955153	P	8.270148	P	0.826660753373049	0	lncRNA	34341-1_{1..680}	n339324|M64700|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1756|NULL|-0.7831130|-0.0769215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339324|M64700|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1756|NULL|-0.7831130|-0.0769215	chr16	 87330554	 87331233	+	NA	NA	NA	NA	C16orf95	NA	chr16:87336404-87341232	inter
CUST_12839_PI429285431	1.2568598	A	0.89335775	A	1.28654511621768	0	lncRNA	14466-1_{1..499}	lnc-ABI1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABI1-3:2	chr10	 26868123	 26868621	-	lnc-ABI1-3	lnc-ABI1-3:2	XLOC_008752	linc-ENKUR-2	NA	NA	NA	inter
LNCA_21_P0005186	0.8747896	A	0.87666935	A	0.998697905049571	0	lncRNA	TCONS_00012834	NA	NA	NA	NA	XLOC_005939	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005939), lincRNA [TCONS_00012834]"	chr6:169829384-169829325	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012834	TCONS_00012834	chr6	169829325	169829384	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46712_PI429285431	9.816784	P	9.629039	P	1.13898204147069	0	lncRNA	50870-2_{3001..4781}	"gi|378824465|ref|NR_046393.1| Homo sapiens active BCR-related (ABR), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378824465|ref|NR_046393.1| Homo sapiens active BCR-related (ABR), transcript variant 5, non-coding RNA"	Chr17	   909758	   911538	-	29	NR_046393.1	NA	NA	NA	NA	NA	inter
CUST_21325_PI429285431	0.87472665	A	0.8740615	A	1.00046115314558	0	lncRNA	22948-1_{1..435}	lnc-TEKT5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TEKT5-2:1	chr16	 10671884	 10672318	-	lnc-TEKT5-2	lnc-TEKT5-2:1	ENSG00000260310.1	RP11-27M24.2	EMP2	NA	chr16:10661884-10674539	inner
CUST_14883_PI429285431	8.776749	P	8.425054	P	1.27605896882444	0	lncRNA	16548-1_{1..356}	lnc-PRR16-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRR16-1:2	chr5	120116913	120117268	+	lnc-PRR16-1	lnc-PRR16-1:2	XLOC_004528	linc-FTMT-3	NA	NA	NA	inter
CUST_17342_PI429285431	1.3708692	A	0.89081067	A	1.39480025211555	0	lncRNA	19059-2_{3001..4146}	lnc-NDFIP2-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDFIP2-2:9	chr13	 80000687	 80001832	+	lnc-NDFIP2-2	lnc-NDFIP2-2:9	XLOC_010445	linc-NDFIP2-1	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80"	NA	inter
LNCA_21_P0008742	7.30163	P	2.3473792	A	31.0011708710843	0	lncRNA	TCONS_00023682	NA	NA	NA	NA	XLOC_011481	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011481), lincRNA [TCONS_00023682]"	chr15:53096708-53096453	hs|15q21.3	Agilent_HUMAN_G3V2	TCONS_00023682	TCONS_00023682	chr15	 53096453	 53096708	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22565_PI429285431	2.0250542	A	0.8713414	A	2.22485729057974	0	lncRNA	24152-1_{1..374}	lnc-KLF15-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLF15-1:2	chr3	126113319	126113692	-	lnc-KLF15-1	lnc-KLF15-1:2	ENSG00000249833.1	RP11-71E19.5	CCDC37	NA	chr3:126113782-126123431	inter
LNCA_21_P0003340	0.8748956	A	1.6705976	A	0.576062799185248	0	lncRNA	TCONS_00007487	NA	NA	NA	NA	XLOC_003471	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003471), lincRNA [TCONS_00007487]"	chr4:17486030-17486089	hs|4p15.32	Agilent_HUMAN_G3V2	TCONS_00007487	TCONS_00007487	chr4	 17486030	 17486089	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_24_P273180	0.8751881	A	0.8717125	A	1.00241200655952	0	lncRNA	XR_109745	XR_109745	XR_109745	   649179	Hs.553939	PRAMEL	preferentially expressed antigen in melanoma-like	NA	THC2482256	NA	"PREDICTED: Homo sapiens preferentially expressed antigen in melanoma-like (PRAMEL), miscRNA [XR_109745]"	chr22:22348779-22348720	hs|22q11.22	Agilent_HUMAN_G3V2	XR_109745	XR_109745	chr22	 22348720	 22348779	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19101_PI429285431	4.815165	P	2.7939544	A	4.05924269832017	0	lncRNA	20790-1_{1..65}	lnc-FANK1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FANK1-3:1	chr10	127703096	127703160	+	lnc-FANK1-3	lnc-FANK1-3:1	CAR	;	ADAM12	NA	chr10:127702898-127713161	inner
LNCA_21_P0009872	3.8055494	P	5.2467113	P	0.368270591614701	0	lncRNA	ENST00000449500	NA	NA	NA	NA	XLOC_013615	NA	ENST00000449500	NA	NA	"BROAD Institute lincRNA (XLOC_013615), lincRNA [TCONS_00027984]"	chr20:62260118-62260177	hs|20q13.33	Agilent_HUMAN_G3V2	ENST00000449500	ENST00000449500	chr20	 62260118	 62260177	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012638	0.8754958	A	3.977584	P	0.116460433569146	0	lncRNA	TCONS_l2_00020917	NA	NA	NA	NA	XLOC_l2_010963	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010963), lincRNA [TCONS_l2_00020917]"	chr4:183956600-183956659	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_l2_00020917	TCONS_l2_00020917	chr4	183956600	183956659	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34174_PI429285431	3.0553675	A	2.5899935	A	1.38067522917454	0	lncRNA	35691-1_{1..3000}	n341023|AK024304|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3489|NULL|1.5363700|-0.2087442	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341023|AK024304|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3489|NULL|1.5363700|-0.2087442	chr11	 45249367	 45252366	+	NA	NA	NA	NA	PRDM11	NA	chr11:45239367-45246903	inner
LNCA_21_P0011457	6.267235	P	6.2521105	P	1.01053864899998	0	lncRNA	TCONS_l2_00010020	NA	NA	NA	NA	XLOC_l2_005403	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005403), lincRNA [TCONS_l2_00010020]"	chr16:14915083-14915024	hs|16p13.11	Agilent_HUMAN_G3V2	TCONS_l2_00010020	TCONS_l2_00010020	chr16	 14915024	 14915083	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26956_PI429285431	0.9099144	A	0.8966985	A	1.00920265020183	0	lncRNA	28477-1_{1..2745}	n324037|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053025|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053025|-0.1647080|-0.2734118	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324037|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053025|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053025|-0.1647080|-0.2734118	chr9	 92961871	 92964615	+	NA	NA	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-22.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.04;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30"	NA	inter
CUST_35641_PI429285431	9.157481	P	8.143324	P	2.01972237771918	0	lncRNA	37056-1_{1..1346}	n342786|BC001774|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5289|NULL|-0.9982670|-0.3122225	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342786|BC001774|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5289|NULL|-0.9982670|-0.3122225	chr11	117015043	117016388	+	NA	NA	NA	NA	PAFAH1B2	NA	chr11:117015000-117047610	inner
LNCA_21_P0010019	8.528466	P	8.752958	P	0.855896349796541	0	lncRNA	TCONS_00028338	NA	NA	NA	NA	XLOC_013685	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013685), lincRNA [TCONS_00028338]"	chr20:22569873-22569814	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028338	TCONS_00028338	chr20	 22569814	 22569873	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013810	5.5458627	P	5.3708515	P	1.12897316927129	0	lncRNA	TCONS_l2_00030466	NA	NA	NA	NA	XLOC_l2_015700	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015700), lincRNA [TCONS_l2_00030466]"	chrX:27190791-27190732	hs|Xp21.3	Agilent_HUMAN_G3V2	TCONS_l2_00030466	TCONS_l2_00030466	chrX	 27190732	 27190791	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28264_PI429285431	4.8397994	P	5.267901	P	0.743239148681784	0	lncRNA	29899-1_{1..323}	n325556|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256095|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256095|-1.1887500|-0.3227054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325556|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000256095|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000256095|-1.1887500|-0.3227054	chr17	 29830465	 29830787	+	NA	NA	NA	NA	RAB11FIP4	NA	chr17:29820465-29841089	inner
CUST_40725_PI429285431	0.90393174	A	0.90488017	A	0.999342814460616	0	lncRNA	41459-1_{1..1880}	n410315|NR_037181_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037181_4||-0.9825640|-0.2431300	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410315|NR_037181_4|lncRNA|Homosapiens||RefGeneNoncode|NR_037181_4||-0.9825640|-0.2431300	chr6	   800372	   802251	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3698_PI429285431	1.3512317	A	1.181809	A	1.1246083782471	0	lncRNA	3666-1_{1..328}	"transcript_id ""ENST00000440189.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440189.1"" | genecode_v17"	chr10	 60064313	 60064640	+	ENSG00000228527.1	ENST00000440189.1	RP11-179B15.5	RP11-179B15.5-001	NA	NA	NA	inter
CUST_28018_PI429285431	0.9090171	A	0.91924965	A	0.992932430391267	0	lncRNA	29628-1_{1..412}	n325274|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328220|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328220|-1.0747600|-0.4122944	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325274|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328220|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328220|-1.0747600|-0.4122944	chr2	 66777797	 66778208	-	NA	NA	NA	NA	MEIS1	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20chr2:66767797-66793833"	NA	inner
LNCA_21_P0010301	2.9905138	P	3.9607809	P	0.510411556707919	0	lncRNA	TCONS_00029179	NA	NA	NA	NA	XLOC_014118	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014118), lincRNA [TCONS_00029179]"	chr21:45871285-45871140	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029179	TCONS_00029179	chr21	 45871140	 45871285	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19326_PI429285431	1.8448788	A	4.220889	A	0.192641415090479	0	lncRNA	20992-1_{1..578}	lnc-COL1A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COL1A1-1:2	chr17	 48292383	 48292960	-	lnc-COL1A1-1	lnc-COL1A1-1:2	ENSG00000263176.1	RP11-893F2.15	NA	NA	NA	inter
CUST_14496_PI429285431	0.91237223	A	0.9225711	A	0.992955610865078	0	lncRNA	16163-1_{1..1122}	lnc-CDH6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CDH6-2:1	chr5	 29162523	 29163644	+	lnc-CDH6-2	lnc-CDH6-2:1	XLOC_004325	linc-CDH6-3	NA	NA	NA	inter
CUST_39923_PI429285431	0.89623845	A	1.2400289	A	0.787968329343076	0	lncRNA	40801-1_{1..761}	n406786|NR_024237|lncRNA|Homosapiens||RefGeneNoncode|NR_024237||1.5968800|-0.1691084	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406786|NR_024237|lncRNA|Homosapiens||RefGeneNoncode|NR_024237||1.5968800|-0.1691084	chr1	151810944	151811704	+	NA	NA	NA	NA	RORC	"hg19_refFlat_C2CD4D:range=chr1:151810404-1518114655'pad=0,hg19_refFlat_C2CD4D:range=chr1:151810404-1518114655'pad=0 3'pad=0 strand=- repeatMasking=none,-111.10chr1:151800944-151804348"	NA	inter
CUST_27435_PI429285431	0.9195801	A	0.91705066	A	1.00175481208826	0	lncRNA	29001-1_{1..331}	n324606|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039730|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039730|-1.2226600|-0.2675679	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324606|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039730|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039730|-1.2226600|-0.2675679	chr6	  4290975	  4291305	-	NA	NA	NA	NA	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60"	NA	inter
CUST_12271_PI429285431	7.1588135	P	6.2604413	P	1.86396167890262	0	lncRNA	13880-1_{1..422}	lnc-MBP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBP-1:2	chr18	 74533972	 74534393	-	lnc-MBP-1	lnc-MBP-1:2	XLOC_012895	linc-ZNF516-4	ZNF236	NA	chr18:74536116-74544242	inter
CUST_46696_PI429285431	3.489639	A	4.8246446	P	0.396390529663079	0	lncRNA	50856-1_{1..588}	"gi|397139913|ref|XR_158904.1| PREDICTED: Homo sapiens uncharacterized LOC642452 (LOC642452), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139913|ref|XR_158904.1| PREDICTED: Homo sapiens uncharacterized LOC642452 (LOC642452), misc_RNA"	NA	NA	NA	NA	NA	XR_158904.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001131	2.3987303	A	2.0006187	A	1.31778188510624	0	lncRNA	ENST00000429099	NA	NA	NA	NA	XLOC_000836	NA	ENST00000429099	NA	NA	"BROAD Institute lincRNA (XLOC_000836), lincRNA [TCONS_00000522]"	chr1:53814219-53814160	hs|1p32.3	Agilent_HUMAN_G3V2	ENST00000429099	ENST00000429099	chr1	 53814160	 53814219	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36573_PI429285431	3.4752223	P	3.6977355	P	0.857071102383506	0	lncRNA	37768-1_{1..764}	n345070|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_619|NULL|-1.6016300|-0.2246619	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345070|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_619|NULL|-1.6016300|-0.2246619	chrX	 71139165	 71139928	+	NA	NA	NA	NA	NHSL2	NA	chrX:71130938-71274824	inner
CUST_316_PI429285431	1.0323195	A	0.90418565	A	1.09287912926427	0	lncRNA	307-1_{1..2272}	"transcript_id ""ENST00000435559.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435559.1"" | genecode_v17"	chr1	 95086707	 95088978	-	ENSG00000235565.1	ENST00000435559.1	RP11-86H7.7	RP11-86H7.7-001	NA	NA	NA	inter
CUST_17962_PI429285431	5.672988	P	5.624466	P	1.03420486748942	0	lncRNA	19695-1_{1..245}	lnc-SEC23IP-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEC23IP-1:4	chr10	122047902	122048146	+	lnc-SEC23IP-1	lnc-SEC23IP-1:4	XLOC_008642	linc-PPAPDC1A	NA	NA	NA	inter
CUST_46659_PI429285431	1.7537739	A	1.5493058	A	1.1522614469819	0	lncRNA	50829-1_{1..1776}	"gi|238859660|ref|NR_027755.1| Homo sapiens uncharacterized LOC283867 (LOC283867), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|238859660|ref|NR_027755.1| Homo sapiens uncharacterized LOC283867 (LOC283867), non-coding RNA"	NA	NA	NA	NA	NA	NR_027755.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006925	5.700121	P	5.5786366	P	1.08785358780042	0	lncRNA	TCONS_00018357	NA	NA	NA	NA	XLOC_008642	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008642), lincRNA [TCONS_00018357]"	chr10:122047922-122047981	hs|10q26.12	Agilent_HUMAN_G3V2	TCONS_00018357	TCONS_00018357	chr10	122047922	122047981	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26901_PI429285431	3.8658679	P	3.7067075	P	1.11663710369652	0	lncRNA	28419-1_{1..297}	n323977|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053940|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053940|-0.1897710|-0.3178141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323977|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053940|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053940|-0.1897710|-0.3178141	chr9	124203069	124203365	-	NA	NA	NA	NA	NA	"hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-30.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-24.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.91;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20"	NA	inter
CUST_45579_PI429285431	0.89498144	A	0.92636657	A	0.97848040844897	0	lncRNA	49973-1_{1..1858}	"gi|213417968|ref|NR_024472.1| Homo sapiens Ras suppressor protein 1 pseudogene 2 (RSU1P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|213417968|ref|NR_024472.1| Homo sapiens Ras suppressor protein 1 pseudogene 2 (RSU1P2), non-coding RNA"	Chr10	 45594924	 45596781	-	100133308	NR_024472.1	NA	NA	NA	NA	NA	inter
CUST_37583_PI429285431	1.2584547	A	0.8885307	A	1.29228475233588	0	lncRNA	38684-3_{6001..8440}	n346058|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1608|NULL|-1.3006800|-0.3158944	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346058|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1608|NULL|-1.3006800|-0.3158944	chr6	138147786	138150225	-	NA	NA	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80"	NA	inter
CUST_33306_PI429285431	3.8796372	P	3.9210563	P	0.971698670472786	0	lncRNA	34889-1_{1..1174}	n340023|BC031882|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2477|NULL|-1.1497300|-0.3290938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340023|BC031882|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2477|NULL|-1.1497300|-0.3290938	chr10	 47656085	 47657258	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15970_PI429285431	0.88742876	A	0.8986701	A	0.992238375057855	0	lncRNA	17668-1_{1..2138}	lnc-RP11-408E5.4.1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RP11-408E5.4.1-4:3	chr13	 19585820	 19587957	+	lnc-RP11-408E5.4.1-4	lnc-RP11-408E5.4.1-4:3	XLOC_010288	linc-MPHOSPH8-4	NA	NA	NA	inter
CUST_1263_PI429285431	1.8400266	A	1.681469	A	1.11617063765597	0	lncRNA	1255-1_{1..576}	"transcript_id ""ENST00000437095.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437095.1"" | genecode_v17"	chr2	233285371	233285946	-	ENSG00000237087.1	ENST00000437095.1	AC068134.6	AC068134.6-001	ALPI	NA	chr2:233280738-233296171	inter
LNCA_21_P0008775	3.5454261	P	4.0152454	P	0.72205503071455	0	lncRNA	TCONS_00023774	NA	NA	NA	NA	XLOC_011569	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011569), lincRNA [TCONS_00023774]"	chr15:89147584-89147440	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00023774	TCONS_00023774	chr15	 89147440	 89147584	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27242_PI429285431	1.2447963	A	0.91101706	A	1.26031052515474	0	lncRNA	28791-1_{1..775}	n324384|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042290|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042290|-1.0316400|-0.1820800	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324384|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042290|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042290|-1.0316400|-0.1820800	chr6	134200014	134200788	+	NA	NA	NA	NA	TCF21	NA	chr6:134210259-134216675	inner
CUST_36990_PI429285431	7.4065146	P	7.2362547	P	1.12526118105324	0	lncRNA	38135-1_{1..1626}	n345451|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1000|NULL|-1.3011000|-0.2315118	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345451|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1000|NULL|-1.3011000|-0.2315118	chr1	 95081923	 95083548	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41938_PI429285431	0.8890523	A	0.8881609	A	1.0006180623186	0	lncRNA	43694-1_{1..79}	ENST00000580367 ncrna:miRNA chromosome:GRCh37:7:19744981:19745059:-1 gene:ENSG00000265932 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580367 ncrna:miRNA chromosome:GRCh37:7:19744981:19745059:-1 gene:ENSG00000265932 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 19744981	 19745059	-	ENSG00000265932	ENST00000580367	NA	NA	TWISTNB	NA	chr7:19735085-19748660	inner
LNCA_21_P0002663	2.4732068	A	1.9828522	A	1.40479011665692	0	lncRNA	TCONS_00005167	NA	NA	NA	NA	XLOC_002125	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002125), lincRNA [TCONS_00005167]"	chr2:64565223-64530721	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00005167	TCONS_00005167	chr2	 64530721	 64565223	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13036_PI429285431	3.035622	A	3.3846111	P	0.785134050577807	0	lncRNA	14661-1_{1..597}	lnc-RUNX2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RUNX2-2:1	chr6	 45634067	 45634663	+	lnc-RUNX2-2	lnc-RUNX2-2:1	XLOC_005303	linc-ENPP4-1	NA	NA	NA	inter
CUST_15906_PI429285431	2.3012106	A	1.1222347	A	2.26415998145925	0	lncRNA	17600-1_{1..205}	lnc-FRG1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FRG1-5:2	chr4	190198265	190198469	+	lnc-FRG1-5	lnc-FRG1-5:2	XLOC_003839	linc-FRG1-5	NA	NA	NA	inter
CUST_25788_PI429285431	4.3185215	P	3.1951427	P	2.17856596890988	0	lncRNA	27310-1_{1..480}	lnc-DOPEY1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DOPEY1-1:1	chr6	 83647956	 83648435	+	lnc-DOPEY1-1	lnc-DOPEY1-1:1	ENSG00000227215.1	RP11-445L13__B.3	UBE2CBP	NA	chr6:83637956-83658396	inner
LNCA_21_P0013716	5.1719666	P	1.9381518	A	9.40752227310642	0	lncRNA	AK127963	NA	AK127963	NA	Hs.683391	XLOC_l2_015121	NA	NA	THC2634810	NA	"BROAD Institute lincRNA (XLOC_l2_015121), lincRNA [TCONS_l2_00029903]"	chr9:14987372-14987313	hs|9p22.3	Agilent_HUMAN_G3V2	AK127963	AK127963	chr9	 14987313	 14987372	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39421_PI429285431	0.90348476	A	0.909634	A	0.99574674246078	0	lncRNA	40381-1_{1..3000}	n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386722|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010tcj.1||1.6736300|-0.3861843	chr13	 19408542	 19411541	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40"	NA	inter
CUST_34244_PI429285431	2.8165753	A	2.4329982	A	1.30457247976958	0	lncRNA	35750-1_{1..1835}	n341101|BC041922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3567|NULL|-0.8585940|-0.1972166	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341101|BC041922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3567|NULL|-0.8585940|-0.1972166	chr11	 94276130	 94277964	-	NA	NA	NA	NA	FUT4	"hg19_refFlat_FUT4:range=chr11:94277300-942788925'pad=0,hg19_refFlat_FUT4:range=chr11:94277300-942788925'pad=0 3'pad=0 strand=+ repeatMasking=none,-112.30chr11:94277017-94283064"	NA	inner
CUST_16210_PI429285431	0.89730805	A	0.8861068	A	1.00779433375303	0	lncRNA	17916-1_{1..286}	lnc-C17orf79-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C17orf79-1:1	chr17	 29986608	 29986893	-	lnc-C17orf79-1	lnc-C17orf79-1:1	XLOC_012436	linc-EVI2A	NA	NA	NA	inter
CUST_23731_PI429285431	0.921016	A	1.5435004	A	0.649551400910579	0	lncRNA	25295-1_{1..3000}	lnc-MSRA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-MSRA-1:1	chr8	 10291182	 10294181	+	lnc-MSRA-1	lnc-MSRA-1:1	ENSG00000261451.1	RP11-981G7.1	MSRA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_OVCH1:range=chr12:29580504-296506195'pad=0,hg19_refFlat_OVCH1:range=chr12:29580504-296506195'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60chr8:10281182-10286401"	NA	inter
CUST_17281_PI429285431	1.301286	A	1.332635	A	0.978504913239541	0	lncRNA	18999-1_{1..1990}	lnc-COL4A1-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL4A1-2:7	chr13	110698132	110700121	-	lnc-COL4A1-2	lnc-COL4A1-2:7	XLOC_010719	linc-IRS2-2	NA	NA	NA	inter
CUST_48671_PI429285431	0.88812894	A	0.88594174	A	1.00151720130039	0	lncRNA	52514-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00014714 range=chr2:96627469-96658969 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014714 range=chr2:96627469-96658969 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 96627469	 96630468	-	NA	NA	NA	NA	LOC400986	NA	chr2:96617469-96657980	inter
CUST_1729_PI429285431	0.89140195	A	0.8957313	A	0.997003621383896	0	lncRNA	1715-1_{1..332}	"transcript_id ""ENST00000515263.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515263.1"" | genecode_v17"	chr4	 33435132	 33435463	+	ENSG00000248417.1	ENST00000515263.1	RP11-802H3.2	RP11-802H3.2-001	NA	NA	NA	inter
CUST_15845_PI429285431	0.8792769	A	0.8778818	A	1.00096747733616	0	lncRNA	17537-1_{1..422}	lnc-PDE8B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE8B-2:1	chr5	 77254684	 77255105	+	lnc-PDE8B-2	lnc-PDE8B-2:1	XLOC_004440	linc-SCAMP1-1	NA	NA	NA	inter
LNCA_21_P0012892	3.6128135	P	2.9318733	A	1.60318420511336	0	lncRNA	TCONS_l2_00022807	NA	NA	NA	NA	XLOC_l2_011954	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011954), lincRNA [TCONS_l2_00022807]"	chr5:17142317-17142258	hs|5p15.1	Agilent_HUMAN_G3V2	TCONS_l2_00022807	TCONS_l2_00022807	chr5	 17142258	 17142317	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39953_PI429285431	8.369565	P	8.716535	P	0.786233641239296	0	lncRNA	40826-2_{3001..3498}	n406968|NR_024465|lncRNA|Homosapiens||RefGeneNoncode|NR_024465||5.5672300|-0.1817629	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406968|NR_024465|lncRNA|Homosapiens||RefGeneNoncode|NR_024465||5.5672300|-0.1817629	chr16	 30365086	 30365583	-	NA	NA	NA	NA	TBC1D10B	NA	chr16:30368422-30376255	inner
CUST_31054_PI429285431	3.2510548	A	2.06305	A	2.2783743348256	0	lncRNA	32844-1_{1..491}	n337277|BC127941|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389557|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389557|2.4507300|-0.3321938	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337277|BC127941|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389557|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389557|2.4507300|-0.3321938	chr16	 14304060	 14304550	+	NA	NA	NA	NA	MKL2	NA	chr16:14294060-14322772	inner
CUST_39232_PI429285431	1.4032397	A	2.0032	A	0.659772110708028	0	lncRNA	40205-1_{1..3000}	n386058|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010aeh.1||0.3257570|-0.1651082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386058|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010aeh.1||0.3257570|-0.1651082	chr13	 64402979	 64405978	-	NA	NA	NA	NA	LOC100507505	NA	chr13:64392979-64407126	inter
CUST_37101_PI429285431	1.0570699	A	1.706479	A	0.637541384818036	0	lncRNA	38226-1_{1..2159}	n345544|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1093|NULL|-1.3295300|-0.3775639	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345544|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1093|NULL|-1.3295300|-0.3775639	chr2	150445612	150447770	+	NA	NA	NA	NA	MMADHC	NA	chr2:150435612-150444330	inter
CUST_12897_PI429285431	7.350224	P	7.248185	P	1.07328929995193	0	lncRNA	14525-1_{1..345}	lnc-HIATL1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HIATL1-2:2	chr9	 97109294	 97109638	+	lnc-HIATL1-2	lnc-HIATL1-2:2	XLOC_007469	linc-HIATL1-1	LOC728026	"hg19_refFlat_PTMA:range=chr2:232573417-2325775615'pad=0,hg19_refFlat_PTMA:range=chr2:232573417-2325775615'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40chr9:97109516-97109845"	NA	inter
CUST_37860_PI429285431	3.5505848	P	3.4922583	P	1.04125722060233	0	lncRNA	38953-1_{1..322}	n346395|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1945|NULL|-1.3548700|-0.2624628	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346395|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1945|NULL|-1.3548700|-0.2624628	chr7	 65952936	 65953257	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13532_PI429285431	3.0181518	A	3.4830606	A	0.72451687618073	0	lncRNA	15172-1_{1..1908}	lnc-EXOC2-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXOC2-5:3	chr6	  1099948	  1101855	-	lnc-EXOC2-5	lnc-EXOC2-5:3	XLOC_005571	linc-HUS1B-7	NA	NA	NA	inter
CUST_13295_PI429285431	5.6434255	P	5.8625593	P	0.859081077416421	0	lncRNA	14928-1_{1..811}	lnc-GPR27-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR27-1:1	chr3	 71835368	 71836178	+	lnc-GPR27-1	lnc-GPR27-1:1	XLOC_002701	linc-GXYLT2-3	PROK2	NA	chr3:71825368-71834357	inter
CUST_7789_PI429285431	3.365424	P	3.0042832	A	1.28444115806543	0	lncRNA	9413-1_{1..716}	lnc-TRIML1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRIML1-3:2	chr4	189406933	189407648	+	lnc-TRIML1-3	lnc-TRIML1-3:2	ENSG00000249378	RP11-219G10.3	NA	NA	NA	inter
LNCA_21_P0005640	6.894729	P	7.0932455	P	0.871446196778121	0	lncRNA	TCONS_00014570	NA	NA	NA	NA	XLOC_006680	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006680), lincRNA [TCONS_00014570]"	chr8:686520-686579	hs|8p23.3	Agilent_HUMAN_G3V2	TCONS_00014570	TCONS_00014570	chr8	   686520	   686579	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009845	1.9752175	A	0.9131475	A	2.08792515914637	0	lncRNA	XR_109617	XR_109617	XR_109617	NA	NA	LOC100505983	uncharacterized LOC100505983	ENST00000431915	THC2665997	NA	"PREDICTED: Homo sapiens hypothetical LOC100505983 (LOC100505983), miscRNA [XR_109617]"	chr20:46580740-46580799	hs|20q13.13	Agilent_HUMAN_G3V2	XR_109617	XR_109617	chr20	 46580740	 46580799	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15150_PI429285431	0.91275537	A	1.5548286	A	0.640791435214451	0	lncRNA	16812-2_{3001..6000}	lnc-SEPT9-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-SEPT9-3:2	chr17	 75560027	 75563026	+	lnc-SEPT9-3	lnc-SEPT9-3:2	XLOC_012317	linc-TNRC6C-3	LOC100652922	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr17:75548387-75550976"	NA	inter
CUST_26638_PI429285431	2.7996426	A	2.495766	A	1.23445701388449	0	lncRNA	28141-1_{1..1379}	lnc-C16orf62-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf62-1:1	chr16	 19726108	 19727486	+	lnc-C16orf62-1	lnc-C16orf62-1:1	ENSG00000261312.1	AC002550.5	IQCK	"hg19_refFlat_C16orf88:range=chr16:19718232-197263575'pad=0,hg19_refFlat_C16orf88:range=chr16:19718232-197263575'pad=0 3'pad=0 strand=- repeatMasking=none,-101.80chr16:19727778-19736705"	NA	inner
CUST_37598_PI429285431	0.8816882	A	0.888564	A	0.995245397693599	0	lncRNA	38696-1_{1..1294}	n346073|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1623|NULL|-1.7524400|-0.2663424	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346073|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1623|NULL|-1.7524400|-0.2663424	chr8	 30724812	 30726105	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27767_PI429285431	0.8849535	A	0.8995879	A	0.989907481650094	0	lncRNA	29352-1_{1..2425}	n324987|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079326|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079326|-0.1854690|-0.2813387	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324987|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079326|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079326|-0.1854690|-0.2813387	chr20	 41851997	 41854421	+	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.19;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-19.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.71;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90"	NA	inter
LNCA_21_P0014553	3.2573721	P	2.54806	A	1.6350243255521	0	lncRNA	XR_110283	XR_110283	XR_110283	NA	Hs.537370	LOC100506303	uncharacterized LOC100506303	NA	THC2493172	NA	"PREDICTED: Homo sapiens hypothetical LOC100506303 (LOC100506303), miscRNA [XR_110283]"	chr14:19662601-19662660	hs|14q11.2	Agilent_HUMAN_G3V2	XR_110283	XR_110283	chr14	 19662601	 19662660	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29487_PI429285431	3.7975492	P	3.6918201	P	1.07603805430442	0	lncRNA	31245-1_{1..556}	n332911|AF086372|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067251|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067251|-0.2792360|-0.3492710	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332911|AF086372|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067251|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067251|-0.2792360|-0.3492710	chr2	 62230726	 62231281	+	NA	NA	NA	NA	COMMD1	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-25.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50chr2:62220726-62241282"	NA	inner
LNCA_21_P0009288	3.280021	P	3.314127	P	0.976636769305593	0	lncRNA	TCONS_00025531	NA	NA	NA	NA	XLOC_012358	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012358), lincRNA [TCONS_00025531]"	chr17:3608381-3608322	hs|17p13.2	Agilent_HUMAN_G3V2	TCONS_00025531	TCONS_00025531	chr17	  3608322	  3608381	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52192_PI429285431	5.282713	P	5.4722137	P	0.876909156881117	0	lncRNA	55708-1_{1..1055}	hg19_lincRNAsTranscripts_TCONS_l2_00017669 range=chr22:25851682-25862711 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017669 range=chr22:25851682-25862711 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 25851682	 25852736	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40525_PI429285431	3.860321	P	3.7877257	P	1.05160674460894	0	lncRNA	41287-1_{1..1369}	n409607|NR_033989|lncRNA|Homosapiens||RefGeneNoncode|NR_033989||-0.8464260|-0.2214099	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n409607|NR_033989|lncRNA|Homosapiens||RefGeneNoncode|NR_033989||-0.8464260|-0.2214099	chr11	 19532439	 19533807	-	NA	NA	NA	NA	NAV2	NA	chr11:19522439-19555625	inner
CUST_29551_PI429285431	6.150447	P	6.101454	P	1.03454256187491	0	lncRNA	31311-1_{1..485}	n333031|AF177925|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072731_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072731_03|1.9245000|-0.0315219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333031|AF177925|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000072731_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000072731_03|1.9245000|-0.0315219	chr3	195513846	195514330	-	NA	NA	NA	NA	MUC4	NA	chr3:195503846-195524331	inner
CUST_201_PI429201921	4.2237625	P	3.8161097	P	1.32652585953613	0	lncRNA	161-2_{3001..5291}	TC07002549.hg.1	TCONS_l2_00027205-XLOC_l2_013575 // Broad TUCP // linc-HYAL4 chr7:+:123454192-123459484 // chr7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr7:+:123454192-123459484	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00027205-XLOC_l2_013575	linc-HYAL4	chr7	123454192	123459484	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49728_PI429285431	1.2339948	A	0.8934055	A	1.26627372524338	0	lncRNA	53501-1_{1..1408}	hg19_lincRNAsTranscripts_TCONS_l2_00025771 range=chr7:29723889-29727452 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025771 range=chr7:29723889-29727452 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 29723889	 29725296	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27099_PI429285431	0.9006012	A	0.9077561	A	0.995052878751106	0	lncRNA	28632-1_{1..645}	n324210|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000140109|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000140109|-0.8279990|-0.2585664	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324210|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000140109|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000140109|-0.8279990|-0.2585664	chr7	 27386705	 27387349	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00322583	8.794429	P	9.382038	P	0.665444845329756	0	lncRNA	ENST00000523154	NA	NA	NA	NA	XLOC_004577	NA	ENST00000523154	THC2506711	NA	"BROAD Institute lincRNA (XLOC_004577), lincRNA [TCONS_00009260]"	chr5:139547328-139547387	hs|5q31.3	Agilent_HUMAN_G3V2	ENST00000523154	ENST00000523154	chr5	139547328	139547387	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_396_PI429285431	5.3839912	P	5.5761786	P	0.875277627438136	0	lncRNA	388-1_{1..557}	"transcript_id ""ENST00000420598.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420598.1"" | genecode_v17"	chr1	143188509	143189065	-	ENSG00000232274.2	ENST00000420598.1	RP11-782C8.2	RP11-782C8.2-005	NA	NA	NA	inter
CUST_28444_PI429285431	7.83324	P	8.134172	P	0.811727840062353	0	lncRNA	30104-1_{1..906}	n325770|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044371|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044371|1.2879100|-0.2903577	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325770|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044371|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044371|1.2879100|-0.2903577	chr13	 30275342	 30276247	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007166	1.8065016	A	0.8733368	A	1.90946013470454	0	lncRNA	THC2750114	NA	NA	NA	NA	XLOC_009016	NA	NA	THC2750114	NA	"BROAD Institute lincRNA (XLOC_009016), lincRNA [TCONS_00019181]"	chr11:000333580-000333639	hs|11p15.5	Agilent_HUMAN_G3V2	THC2750114	THC2750114	chr11	   333580	   333639	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7714_PI429285431	0.8925636	A	0.888466	A	1.00284427718977	0	lncRNA	9346-1_{1..3000}	lnc-DDX27-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DDX27-3:1	chr20	 47789764	 47792763	+	lnc-DDX27-3	lnc-DDX27-3:1	ENSG00000247609	ENST00000501864	STAU1	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chr20:47779764-47800864"	NA	inner
CUST_33459_PI429285431	0.9003612	A	1.7080325	A	0.571303272894258	0	lncRNA	35033-2_{3001..3153}	n340194|CR627201|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2655|NULL|-0.9697260|-0.3759112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340194|CR627201|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2655|NULL|-0.9697260|-0.3759112	chr4	105393670	105393822	-	NA	NA	NA	NA	CXXC4	NA	chr4:105393330-105412467	inner
CUST_49355_PI429285431	1.1986325	A	1.5681589	A	0.774036551534648	0	lncRNA	53168-1_{1..339}	hg19_lincRNAsTranscripts_TCONS_l2_00022997 range=chr5:89531265-89585870 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022997 range=chr5:89531265-89585870 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 89531265	 89531603	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007236	1.9735719	A	2.086817	A	0.924506200067	0	lncRNA	TCONS_00019385	NA	NA	NA	NA	XLOC_009208	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009208), lincRNA [TCONS_00019385]"	chr11:72969240-72969299	hs|11q13.4	Agilent_HUMAN_G3V2	TCONS_00019385	TCONS_00019385	chr11	 72969240	 72969299	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8091_PI429285431	0.9244066	A	1.6196737	A	0.617594966685799	0	lncRNA	9696-2_{3001..3775}	lnc-DET1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DET1-1:2	chr15	 89051640	 89052414	-	lnc-DET1-1	lnc-DET1-1:2	ENSG00000248072	XLOC_011568	DET1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr15:89055714-89059018"	NA	inter
CUST_37833_PI429285431	5.43501	P	5.5402346	P	0.92966020105012	0	lncRNA	38925-1_{1..3000}	n346356|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1906|NULL|-1.3318000|-0.1273038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346356|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1906|NULL|-1.3318000|-0.1273038	chr17	 62774791	 62777790	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3250_PI429285431	1.5256336	A	2.4101572	A	0.541666359762578	0	lncRNA	3229-1_{1..473}	"transcript_id ""ENST00000518090.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518090.1"" | genecode_v17"	chr8	102151893	102152365	+	ENSG00000253737.1	ENST00000518090.1	KB-1460A1.3	KB-1460A1.3-001	NA	NA	NA	inter
LNCA_33_P3386237	2.449403	A	3.1067972	P	0.634022436578211	0	lncRNA	XR_109319	XR_109319	XR_109319	100132529	Hs.710296	LOC100132529	uncharacterized LOC100132529	NA	THC2623186	NA	"PREDICTED: Homo sapiens hypothetical LOC100132529 (LOC100132529), miscRNA [XR_109319]"	chr16:71606282-71606341	hs|16q22.2	Agilent_HUMAN_G3V2	XR_109319	XR_109319	chr16	 71606282	 71606341	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22495_PI429285431	3.5358927	P	3.935033	P	0.758310024551422	0	lncRNA	24082-1_{1..541}	lnc-MTX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTX1-1:1	chr1	155169963	155170503	+	lnc-MTX1-1	lnc-MTX1-1:1	ENSG00000231064.1	RP11-263K19.4	THBS3	"hg19_refFlat_THBS3:range=chr1:155165632-1551776675'pad=0,hg19_refFlat_THBS3:range=chr1:155165632-1551776675'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30chr1:155165379-155177690"	NA	inner
LNCA_21_P0011554	5.019561	P	5.025639	P	0.995795913454912	0	lncRNA	TCONS_l2_00010951	NA	NA	NA	NA	XLOC_l2_005880	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005880), lincRNA [TCONS_l2_00010951]"	chr17:67978462-67978521	hs|17q24.3	Agilent_HUMAN_G3V2	TCONS_l2_00010951	TCONS_l2_00010951	chr17	 67978462	 67978521	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009803	1.4673386	A	0.92780113	A	1.45350644646144	0	lncRNA	TCONS_00027310	NA	NA	NA	NA	XLOC_013308	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013308), lincRNA [TCONS_00027310]"	chr19:35341608-35340430	hs|19q13.11	Agilent_HUMAN_G3V2	TCONS_00027310	TCONS_00027310	chr19	 35340430	 35341608	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2249_PI429285431	1.1998949	A	0.92591774	A	1.20913653325905	0	lncRNA	2241-1_{1..420}	"transcript_id ""ENST00000503691.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503691.1"" | genecode_v17"	chr5	 88877026	 88877445	+	ENSG00000250437.1	ENST00000503691.1	RP11-116A1.1	RP11-116A1.1-001	NA	NA	NA	inter
CUST_3339_PI429285431	0.8878831	A	0.89515084	A	0.994975054004554	0	lncRNA	3317-1_{1..541}	"transcript_id ""ENST00000519652.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519652.1"" | genecode_v17"	chr8	138864570	138865110	+	ENSG00000254361.1	ENST00000519652.1	RP11-238K6.2	RP11-238K6.2-001	NA	NA	NA	inter
LNCA_21_P0002859	9.072074	P	9.218812	P	0.903290536939059	0	lncRNA	ENST00000478745	NA	NA	NA	NA	XLOC_003160	NA	ENST00000478745	NA	NA	"BROAD Institute lincRNA (XLOC_003160), lincRNA [TCONS_00005788]"	chr3:72554016-72553957	hs|3p13	Agilent_HUMAN_G3V2	ENST00000478745	ENST00000478745	chr3	 72553957	 72554016	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007383	0.9124426	A	0.9457936	A	0.977148002597216	0	lncRNA	TCONS_00019733	NA	NA	NA	NA	XLOC_009526	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009526), lincRNA [TCONS_00019733]"	chr11:94818203-94818144	hs|11q21	Agilent_HUMAN_G3V2	TCONS_00019733	TCONS_00019733	chr11	 94818144	 94818203	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17952_PI429285431	0.9100698	A	1.6480502	A	0.599578102519302	0	lncRNA	19682-2_{3001..5242}	lnc-AL137145.1-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-AL137145.1-2:9	chr10	  6635912	  6638153	+	lnc-AL137145.1-2	lnc-AL137145.1-2:9	XLOC_008370	linc-ITIH2-10	NA	NA	NA	inter
CUST_3786_PI429285431	0.9259537	A	2.6846468	A	0.295515744186832	0	lncRNA	3754-1_{1..551}	"transcript_id ""ENST00000424701.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424701.1"" | genecode_v17"	chr10	107900049	107900599	+	ENSG00000229775.2	ENST00000424701.1	RP11-298H24.1	RP11-298H24.1-002	NA	NA	NA	inter
CUST_13420_PI429285431	1.7473098	A	2.1712816	A	0.745369762813845	0	lncRNA	15059-1_{1..487}	lnc-KLHL31-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL31-2:3	chr6	 53658081	 53658567	-	lnc-KLHL31-2	lnc-KLHL31-2:3	XLOC_005748	linc-KLHL31-1	LRRC1	NA	chr6:53659778-53668389	inter
CUST_18807_PI429285431	3.533829	P	3.088258	P	1.3618530136215	0	lncRNA	20502-1_{1..2263}	lnc-BMS1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BMS1-3:4	chr10	 42989452	 42991714	+	lnc-BMS1-3	lnc-BMS1-3:4	ENSG00000185904	RP11-178A10.1	NA	NA	NA	inter
CUST_15244_PI429285431	3.115723	A	2.8477526	A	1.2041126760097	0	lncRNA	16915-1_{1..1172}	lnc-PPP1R32-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP1R32-1:5	chr11	 61273234	 61274405	+	lnc-PPP1R32-1	lnc-PPP1R32-1:5	XLOC_009146	linc-LRRC10B	SYT7	NA	chr11:61282785-61284382	inter
CUST_7216_PI429285431	0.9156665	A	0.93586725	A	0.986095480453882	0	lncRNA	7672-1_{1..282}	"transcript_id ""ENST00000516174.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516174.1"" | genecode_v17"	chr5	 61442492	 61442773	+	ENSG00000251983.1	ENST00000516174.1	RN7SKP157	RN7SKP157-201	NA	NA	NA	inter
LNCA_21_P0006985	2.9342942	A	4.0970078	P	0.446671589436869	0	lncRNA	TCONS_00018476	NA	NA	NA	NA	XLOC_008774	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008774), lincRNA [TCONS_00018476]"	chr10:33362790-33362731	hs|10p11.22	Agilent_HUMAN_G3V2	TCONS_00018476	TCONS_00018476	chr10	 33362731	 33362790	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36411_PI429285431	1.0757613	A	1.0173837	A	1.04129410239979	0	lncRNA	37629-1_{1..541}	n344928|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_477|NULL|-1.3081300|-0.2100808	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344928|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_477|NULL|-1.3081300|-0.2100808	chr6	137436939	137437479	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002505	8.011778	P	7.9067535	P	1.07551265477212	0	lncRNA	TCONS_00004445	NA	NA	NA	NA	XLOC_002323	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002323), lincRNA [TCONS_00004445]"	chr2:132227347-132227288	hs|2q21.1	Agilent_HUMAN_G3V2	TCONS_00004445	TCONS_00004445	chr2	132227288	132227347	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9864_PI429285431	3.185198	P	3.7577126	P	0.672443705153178	0	lncRNA	11387-1_{1..563}	lnc-ZADH2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZADH2-2:1	chr18	 72837320	 72837882	-	lnc-ZADH2-2	lnc-ZADH2-2:1	XLOC_012884	linc-FAM69C-2	NA	NA	NA	inter
CUST_11100_PI429285431	3.0616543	P	3.2923453	A	0.852226607535978	0	lncRNA	12655-1_{1..323}	lnc-CLLU1.1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLLU1.1-6:1	chr12	 91755987	 91756309	+	lnc-CLLU1.1-6	lnc-CLLU1.1-6:1	XLOC_009833	linc-CLLU1-2	NA	NA	NA	inter
CUST_33284_PI429285431	7.3989196	P	7.8412123	P	0.735964100463344	0	lncRNA	34867-1_{1..2008}	n339994|BC040880|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2447|NULL|2.4458700|-0.1363470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339994|BC040880|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2447|NULL|2.4458700|-0.1363470	chr10	 21783420	 21785427	-	NA	NA	NA	NA	C10orf114	NA	chr10:21783421-21786213	inter
CUST_636_PI429285431	1.3568326	A	2.2749126	A	0.529212850832276	0	lncRNA	628-1_{1..811}	"transcript_id ""ENST00000591244.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591244.1"" | genecode_v17"	chr2	   309218	   310028	-	ENSG00000235779.2	ENST00000591244.1	AC079779.5	AC079779.5-019	NA	NA	NA	inter
CUST_2469_PI429285431	0.89500594	A	0.9046079	A	0.993366527759241	0	lncRNA	2461-1_{1..441}	"transcript_id ""ENST00000450255.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450255.1"" | genecode_v17"	chr6	  3893360	  3893800	+	ENSG00000233068.1	ENST00000450255.1	RP1-140K8.1	RP1-140K8.1-002	NA	NA	NA	inter
CUST_12326_PI429285431	2.5937471	A	2.9335172	A	0.790167218562326	0	lncRNA	13939-1_{1..397}	lnc-GARS-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GARS-4:3	chr7	 30430345	 30430741	+	lnc-GARS-4	lnc-GARS-4:3	XLOC_006035	linc-GARS-3	NA	NA	NA	inter
LNCA_21_P0008993	2.8519027	A	3.348602	P	0.708726402249097	0	lncRNA	TCONS_00024503	NA	NA	NA	NA	XLOC_011822	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011822), lincRNA [TCONS_00024503]"	chr16:87615704-87615763	hs|16q24.2	Agilent_HUMAN_G3V2	TCONS_00024503	TCONS_00024503	chr16	 87615704	 87615763	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32195_PI429285431	10.946715	P	11.108439	P	0.893956167521272	0	lncRNA	33892-1_{1..905}	n338768|CR595361|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1189|NULL|-1.1005900|-0.1359244	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338768|CR595361|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1189|NULL|-1.1005900|-0.1359244	chr2	 37898910	 37899814	+	NA	NA	NA	NA	CDC42EP3	NA	chr2:37888910-37899326	inner
CUST_686_PI429285431	0.8827129	A	0.8966062	A	0.990416119216154	0	lncRNA	679-1_{1..1030}	"transcript_id ""ENST00000592394.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000592394.1"" | genecode_v17"	chr2	  6758248	  6759277	-	ENSG00000236172.2	ENST00000592394.1	AC097517.2	AC097517.2-037	NA	NA	NA	inter
CUST_34252_PI429285431	0.8827493	A	0.8780328	A	1.00327457843345	0	lncRNA	35755-1_{1..1966}	n341107|U53531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3573|NULL|8.0999900|-0.4865388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341107|U53531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3573|NULL|8.0999900|-0.4865388	chr11	103024203	103026168	+	NA	NA	NA	NA	DYNC2H1	NA	chr11:103014203-103051679	inner
CUST_7457_PI429285431	2.7869592	A	1.945838	A	1.79144183188226	0	lncRNA	9100-1_{1..594}	lnc-CRYBA4-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CRYBA4-1:8	chr22	 27061495	 27062088	+	lnc-CRYBA4-1	lnc-CRYBA4-1:8	ENSG00000225783	MIAT	NA	NA	NA	inter
LNCA_21_P0004199	6.619643	P	6.7576413	P	0.908779187308032	0	lncRNA	TCONS_00009837	NA	NA	NA	NA	XLOC_004253	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004253), lincRNA [TCONS_00009837]"	chr5:2278511-2278570	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00009837	TCONS_00009837	chr5	  2278511	  2278570	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23164_PI429285431	6.374992	P	6.250483	P	1.09013665757491	0	lncRNA	24735-1_{1..927}	lnc-AC009336.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AC009336.1-1:1	chr2	177001349	177002275	-	lnc-AC009336.1-1	lnc-AC009336.1-1:1	ENSG00000237380.2	HOXD-AS2	HOXD8	NA	chr2:176994422-176997423	inter
CUST_14964_PI429285431	2.373654	A	0.8973798	A	2.7822926983832	0	lncRNA	16627-1_{1..538}	lnc-TMEM217-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM217-1:1	chr6	 37307591	 37308128	-	lnc-TMEM217-1	lnc-TMEM217-1:1	XLOC_005703	linc-TMEM217-2	TBC1D22B	NA	chr6:37297591-37300746	inter
CUST_48719_PI429285431	1.3134388	A	1.5613542	A	0.842112333839594	0	lncRNA	52561-1_{1..681}	hg19_lincRNAsTranscripts_TCONS_l2_00013972 range=chr2:128146248-128163669 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013972 range=chr2:128146248-128163669 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	128146248	128146928	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27486_PI429285431	1.1636912	A	0.8771149	A	1.21974223588477	0	lncRNA	29056-1_{1..780}	n324662|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319656|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319656|-0.9960180|-0.2694659	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324662|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319656|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319656|-0.9960180|-0.2694659	chr22	 41090349	 41091128	-	NA	NA	NA	NA	NA	"hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_37025_PI429285431	3.2244775	P	3.371516	P	0.903102409489024	0	lncRNA	38163-1_{1..447}	n345480|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1029|NULL|-1.3618800|-0.3543790	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345480|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1029|NULL|-1.3618800|-0.3543790	chr1	201142644	201143090	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28455_PI429285431	3.1758397	P	3.006578	P	1.12448288267029	0	lncRNA	30117-2_{3001..6000}	n325784|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000125972|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000125972|2.0091200|-0.3702906	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325784|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000125972|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000125972|2.0091200|-0.3702906	chr13	 29627022	 29630021	-	NA	NA	NA	NA	MTUS2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70chr13:29614022-29641758"	NA	inner
CUST_32973_PI429285431	0.91046655	A	0.9178723	A	0.994879878007142	0	lncRNA	34590-1_{1..3000}	n339650|AK096620|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2094|NULL|11.7467000|-0.2990515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339650|AK096620|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2094|NULL|11.7467000|-0.2990515	chr3	155203176	155206175	-	NA	NA	NA	NA	PLCH1	NA	chr3:155197671-155404205	inner
CUST_10830_PI429285431	0.8983738	A	0.8945476	A	1.00265563972294	0	lncRNA	12365-1_{1..985}	lnc-GLIPR1L1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLIPR1L1-1:5	chr12	 75644273	 75645257	+	lnc-GLIPR1L1-1	lnc-GLIPR1L1-1:5	XLOC_009807	linc-GLIPR1L1-1	CAPS2	NA	chr12:75651515-75655066	inter
CUST_21789_PI429285431	0.90035486	A	1.3586975	A	0.727821896307132	0	lncRNA	23399-1_{1..199}	lnc-XRN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XRN2-1:1	chr20	 21379901	 21380099	+	lnc-XRN2-1	lnc-XRN2-1:1	ENSG00000225280.2	RP11-227D2.3	XRN2	NA	chr20:21369901-21370463	inter
CUST_19837_PI429285431	3.2464685	P	3.3796208	P	0.911836901176638	0	lncRNA	21494-1_{1..553}	lnc-C2orf42-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:2	chr2	 70314920	 70315472	-	lnc-C2orf42-3	lnc-C2orf42-3:2	ENSG00000179818.6	PCBP1-AS1	PCBP1	"hg19_refFlat_PCBP1:range=chr2:70314876-703159465'pad=0,hg19_refFlat_PCBP1:range=chr2:70314876-703159465'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.90chr2:70314585-70316335"	NA	inner
CUST_51351_PI429285431	0.9578769	A	1.072524	A	0.923608208418263	0	lncRNA	54948-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008763 range=chr15:78998357-79029199 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008763 range=chr15:78998357-79029199 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 78998357	 79001356	+	NA	NA	NA	NA	NA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30"	NA	inter
LNCA_21_P0014146	7.73372	P	7.894444	P	0.894576025519929	0	lncRNA	ENST00000511000	XR_108594	XR_108594	NA	Hs.729043	LOC100505949	NA	ENST00000511000	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505949 (LOC100505949), miscRNA [XR_108594]"	chr5:87987919-87987978	hs|5q14.3	Agilent_HUMAN_G3V2	ENST00000511000	ENST00000511000	chr5	 87987919	 87987978	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32747_PI429285431	3.8130198	P	4.174371	P	0.778435170960274	0	lncRNA	34384-1_{1..594}	n339375|U53532|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1807|NULL|4.0654000|-0.3280633	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339375|U53532|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1807|NULL|4.0654000|-0.3280633	chr3	 57431959	 57432552	-	NA	NA	NA	NA	DNAH12	NA	chr3:57421959-57450544	inner
CUST_37714_PI429285431	0.9008483	A	1.2731075	A	0.77257173404403	0	lncRNA	38810-1_{1..278}	n346214|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1764|NULL|-1.5513500|-0.0759007	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346214|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1764|NULL|-1.5513500|-0.0759007	chr12	  9469447	  9469724	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46222_PI429285431	0.9120514	A	0.9279542	A	0.98903754945908	0	lncRNA	50462-1_{1..1824}	"gi|388556520|ref|NR_046551.1| Homo sapiens DLEU7 antisense RNA 1 (DLEU7-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|388556520|ref|NR_046551.1| Homo sapiens DLEU7 antisense RNA 1 (DLEU7-AS1), non-coding RNA"	Chr13	 51381991	 51383814	+	100874074	NR_046551.1	NA	NA	NA	NA	NA	inter
CUST_43510_PI429285431	1.9213943	A	1.615522	A	1.23616583698899	0	lncRNA	48298-1_{1..3000}	"gi|224177486|ref|NR_026986.1| Homo sapiens uncharacterized LOC339524 (LOC339524), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224177486|ref|NR_026986.1| Homo sapiens uncharacterized LOC339524 (LOC339524), transcript variant 2, non-coding RNA"	Chr1	 87597609	 87600608	+	339524	NR_026986.1	NA	NA	NA	NA	NA	inter
CUST_15350_PI429285431	1.7715429	A	2.2064922	A	0.739719749814858	0	lncRNA	17031-1_{1..296}	lnc-GARS-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GARS-4:6	chr7	 30451947	 30452242	+	lnc-GARS-4	lnc-GARS-4:6	XLOC_006035	linc-GARS-3	NA	NA	NA	inter
LNCA_21_P0005754	4.089793	P	3.680264	P	1.32825210575425	0	lncRNA	TCONS_00014837	NA	NA	NA	NA	XLOC_006905	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006905), lincRNA [TCONS_00014837]"	chr8:117619695-117619754	hs|8q23.3	Agilent_HUMAN_G3V2	TCONS_00014837	TCONS_00014837	chr8	117619695	117619754	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49032_PI429285431	8.982953	P	9.180306	P	0.872149281342544	0	lncRNA	52861-1_{1..1076}	hg19_lincRNAsTranscripts_TCONS_l2_00020589 range=chr4:79892680-80229946 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020589 range=chr4:79892680-80229946 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 79892680	 79893755	+	NA	NA	NA	NA	NAA11	NA	chr4:80238272-80239946	inter
CUST_35792_PI429285431	6.14817	P	6.2030354	P	0.962684255052732	0	lncRNA	37203-1_{1..977}	n344473|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_21|NULL|-1.3343500|-0.2057347	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344473|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_21|NULL|-1.3343500|-0.2057347	chr11	 34736324	 34737300	+	NA	NA	NA	NA	APIP	NA	chr11:34903842-34909030	inter
CUST_12011_PI429285431	6.756785	P	6.7394767	P	1.01206945440502	0	lncRNA	13592-1_{1..293}	lnc-TGFBRAP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGFBRAP1-3:1	chr2	105720572	105720864	-	lnc-TGFBRAP1-3	lnc-TGFBRAP1-3:1	XLOC_002243	linc-MFSD9-13	MRPS9	NA	chr2:105710572-105716418	inter
CUST_23074_PI429285431	5.7436724	P	5.967115	P	0.856519145567883	0	lncRNA	24645-1_{1..984}	lnc-C2orf42-3:40	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:40	chr2	 70223818	 70224801	-	lnc-C2orf42-3	lnc-C2orf42-3:40	ENSG00000179818.6	PCBP1-AS1	NA	NA	NA	inter
LNCA_21_P0002720	0.90509146	A	1.7384641	A	0.561215733452459	0	lncRNA	XR_108529	XR_108529	XR_108529	NA	Hs.729377	LOC100505844	uncharacterized LOC100505844	ENST00000446091	THC2602605	NA	"PREDICTED: Homo sapiens hypothetical LOC100505844 (LOC100505844), miscRNA [XR_108529]"	chr3:187683902-187683843	hs|3q27.3	Agilent_HUMAN_G3V2	XR_108529	XR_108529	chr3	187683843	187683902	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11207_PI429285431	0.8870304	A	0.8900255	A	0.99792610837067	0	lncRNA	12764-2_{3001..4924}	lnc-KCNJ12-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-KCNJ12-5:1	chr17	 21547414	 21549337	+	lnc-KCNJ12-5	lnc-KCNJ12-5:1	XLOC_012147	linc-MTRNR2L1-2	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70"	NA	inter
LNCA_21_P0008900	0.89907944	A	1.190191	A	0.817272128434691	0	lncRNA	TCONS_00024310	NA	NA	NA	NA	XLOC_011620	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011620), lincRNA [TCONS_00024310]"	chr16:900302-900600	hs|16p13.3	Agilent_HUMAN_G3V2	TCONS_00024310	TCONS_00024310	chr16	   900302	   900600	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9557_PI429285431	0.9021756	A	0.9145785	A	0.991439813668537	0	lncRNA	11072-1_{1..408}	lnc-FURIN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FURIN-1:1	chr15	 91395972	 91396379	+	lnc-FURIN-1	lnc-FURIN-1:1	XLOC_011350	linc-FURIN	NA	NA	NA	inter
CUST_8002_PI429285431	0.8967533	A	0.897794	A	0.999278901845519	0	lncRNA	9613-1_{1..1876}	lnc-NMI-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NMI-1:1	chr2	152235702	152237577	-	lnc-NMI-1	lnc-NMI-1:1	ENSG00000248650	ENST00000505147	TNFAIP6	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00chr2:152225702-152236562"	NA	inner
LNCA_21_P0009065	0.8934445	A	0.9094152	A	0.988991001805279	0	lncRNA	TCONS_00024735	NA	NA	NA	NA	XLOC_012016	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012016), lincRNA [TCONS_00024735]"	chr16:79692236-79692177	hs|16q23.2	Agilent_HUMAN_G3V2	TCONS_00024735	TCONS_00024735	chr16	 79692177	 79692236	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001980	0.89195746	A	0.90757716	A	0.989231647307875	0	lncRNA	ENST00000449362	NA	NA	NA	NA	XLOC_001904	NA	ENST00000449362	THC2670523	NA	"BROAD Institute lincRNA (XLOC_001904), lincRNA [TCONS_00003129]"	chr2:236087349-236087408	hs|2q37.2	Agilent_HUMAN_G3V2	ENST00000449362	ENST00000449362	chr2	236087349	236087408	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26039_PI429285431	1.4027326	A	1.1138434	A	1.22169927070193	0	lncRNA	27556-1_{1..3000}	lnc-ZNF862-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:1	chr7	149492627	149495626	+	lnc-ZNF862-1	lnc-ZNF862-1:1	ENSG00000197558.7	SSPO	SSPO	NA	chr7:149482627-149503165	inner
LNCA_21_P0007266	0.88374734	A	0.89487374	A	0.992317430172646	0	lncRNA	THC2674632	NA	NA	NA	NA	XLOC_009255	NA	NA	THC2674632	NA	"BROAD Institute lincRNA (XLOC_009255), lincRNA [TCONS_00019445]"	chr11:094890984-094891043	hs|11q21	Agilent_HUMAN_G3V2	THC2674632	THC2674632	chr11	 94890984	 94891043	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34758_PI429285431	0.9171588	A	1.1242449	A	0.866285154983326	0	lncRNA	36200-1_{1..1932}	n341667|BC041871|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4138|NULL|-1.0319700|-0.3914039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341667|BC041871|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4138|NULL|-1.0319700|-0.3914039	chr9	 26642694	 26644625	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51752_PI429285431	0.87629676	A	1.2114007	A	0.792727021965443	0	lncRNA	55304-1_{1..545}	hg19_lincRNAsTranscripts_TCONS_l2_00013391 range=chr19:45050647-45124119 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013391 range=chr19:45050647-45124119 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 45050647	 45051191	-	NA	NA	NA	NA	IGSF23	NA	chr19:45116940-45134119	inner
CUST_37370_PI429285431	0.8914237	A	0.90353745	A	0.991638541427421	0	lncRNA	38475-1_{1..294}	n345820|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1369|NULL|-1.3292300|-0.4101205	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345820|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1369|NULL|-1.3292300|-0.4101205	chr13	 54678117	 54678410	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15322_PI429285431	3.7303662	P	4.0163174	P	0.820200654492339	0	lncRNA	17001-1_{1..2960}	lnc-SH2D4B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SH2D4B-2:1	chr10	 82292142	 82295101	+	lnc-SH2D4B-2	lnc-SH2D4B-2:1	XLOC_008535	linc-SH2D4B	SH2D4B	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60chr10:82297658-82303237"	NA	inter
CUST_43976_PI429285431	9.421948	P	9.396776	P	1.017601004601	0	lncRNA	48677-1_{1..3000}	"gi|397138977|ref|XR_158979.1| PREDICTED: Homo sapiens POTE ankyrin domain family, member K, pseudogene (POTEKP), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|397138977|ref|XR_158979.1| PREDICTED: Homo sapiens POTE ankyrin domain family, member K, pseudogene (POTEKP), misc_RNA"	NA	NA	NA	NA	NA	XR_158979.1	NA	NA	NA	NA	NA	Unknown
CUST_32972_PI429285431	2.7617707	A	2.757279	A	1.00311826088311	0	lncRNA	34589-1_{1..1302}	n339648|AY255534|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2092|NULL|5.8827700|-0.0708501	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339648|AY255534|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2092|NULL|5.8827700|-0.0708501	chr3	154055916	154057217	-	NA	NA	NA	NA	GPR149	NA	chr3:154055461-154147504	inner
CUST_48454_PI429285431	4.9286566	P	4.013711	P	1.88549797363435	0	lncRNA	52309-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00001787 range=chr1:219781270-219786516 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001787 range=chr1:219781270-219786516 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	219781270	219784269	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30695_PI429285431	0.8794829	A	0.8821562	A	0.998148725368937	0	lncRNA	32477-1_{1..460}	n336188|X92881|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324602|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324602|1.5654100|-0.0846399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336188|X92881|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324602|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324602|1.5654100|-0.0846399	chr14	 22386377	 22386836	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16936_PI429285431	1.1152487	A	0.8971618	A	1.16319010360041	0	lncRNA	18648-1_{1..345}	lnc-PYDC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PYDC2-1:1	chr3	191279232	191279576	+	lnc-PYDC2-1	lnc-PYDC2-1:1	XLOC_002968	linc-HRASLS-3	NA	NA	NA	inter
CUST_29484_PI429285431	1.3403478	A	1.5411068	A	0.870092688222049	0	lncRNA	31242-1_{1..423}	n332908|AF086314|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067193|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067193|0.4449900|-0.1139897	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332908|AF086314|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067193|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067193|0.4449900|-0.1139897	chr21	 46067151	 46067573	+	NA	NA	NA	NA	TSPEAR	NA	chr21:46057151-46077574	inner
CUST_41115_PI429285431	0.88039994	A	0.9077606	A	0.981213739114234	0	lncRNA	41870-1_{1..85}	ENST00000385044 ncrna:miRNA chromosome:GRCh37:18:56118306:56118390:1 gene:ENSG00000207778 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385044 ncrna:miRNA chromosome:GRCh37:18:56118306:56118390:1 gene:ENSG00000207778 gene_biotype:miRNA transcript_biotype:miRNA	chr18	 56118306	 56118390	+	ENSG00000207778	ENST00000385044	NA	NA	NA	NA	NA	inter
CUST_4275_PI429285431	2.691164	A	1.4953685	A	2.29071106786192	0	lncRNA	4231-1_{1..433}	"transcript_id ""ENST00000602327.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602327.1"" | genecode_v17"	chr12	 58208277	 58208709	+	ENSG00000269903.1	ENST00000602327.1	RP11-571M6.18	RP11-571M6.18-001	AVIL	NA	chr12:58198277-58209852	inner
CUST_44157_PI429285431	2.979268	A	1.1868482	A	3.46395406783646	0	lncRNA	48818-1_{1..1102}	"gi|410170458|ref|XR_171082.1| PREDICTED: Homo sapiens rRNA-processing protein FCF1 homolog (LOC101060195), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170458|ref|XR_171082.1| PREDICTED: Homo sapiens rRNA-processing protein FCF1 homolog (LOC101060195), misc_RNA"	Chr3	 48331769	 48332870	-	101060195	XR_171082.2	NA	NA	NA	NA	NA	inter
CUST_12441_PI429285431	3.5860636	P	4.0606613	P	0.719667443533007	0	lncRNA	14054-1_{1..335}	lnc-MBOAT1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBOAT1-1:2	chr6	 20332612	 20332946	-	lnc-MBOAT1-1	lnc-MBOAT1-1:2	XLOC_005635	linc-MBOAT1-5	NA	NA	NA	inter
LNCA_21_P0001432	0.87584126	A	0.87459624	A	1.00086335457893	0	lncRNA	TCONS_00001315	NA	NA	NA	NA	XLOC_000595	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000595), lincRNA [TCONS_00001315]"	chr1:227979721-227979780	hs|1q42.13	Agilent_HUMAN_G3V2	TCONS_00001315	TCONS_00001315	chr1	227979721	227979780	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014773	6.5622215	P	6.729015	P	0.890820398964028	0	lncRNA	XR_132547	XR_132547	XR_132547	NA	NA	LOC100652975	uncharacterized LOC100652975	NA	THC2668279	NA	"PREDICTED: Homo sapiens hypothetical LOC100652975 (LOC100652975), miscRNA [XR_132547]"	chr8:110987220-110987279	hs|8q23.2	Agilent_HUMAN_G3V2	XR_132547	XR_132547	chr8	110987220	110987279	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38922_PI429285431	2.4005582	A	2.2837539	A	1.08433031064905	0	lncRNA	39911-1_{1..2477}	n385017|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qev.1||-0.9431670|-0.2302648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n385017|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qev.1||-0.9431670|-0.2302648	chr6	134846455	134848931	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50079_PI429285431	9.755399	P	9.683443	P	1.0511408504049	0	lncRNA	53813-1_{1..416}	hg19_lincRNAsTranscripts_TCONS_l2_00028291 range=chr8:90599966-90659991 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028291 range=chr8:90599966-90659991 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr8	 90599966	 90600381	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013580	3.1234314	P	4.3400235	P	0.430297958287748	0	lncRNA	ENST00000446984	NA	NA	NA	NA	XLOC_l2_014830	NA	ENST00000446984	THC2516391	NA	"BROAD Institute lincRNA (XLOC_l2_014830), lincRNA [TCONS_l2_00028797]"	chr9:71013031-71012972	hs|9q21.11	Agilent_HUMAN_G3V2	ENST00000446984	ENST00000446984	chr9	 71012972	 71013031	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42622_PI429285431	3.3726645	P	2.803341	A	1.48382761982634	0	lncRNA	45487-1_{1..121}	ENST00000516741 ncrna:snoRNA chromosome:GRCh37:13:106549872:106549992:-1 gene:ENSG00000252550 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516741 ncrna:snoRNA chromosome:GRCh37:13:106549872:106549992:-1 gene:ENSG00000252550 gene_biotype:snoRNA transcript_biotype:snoRNA	chr13	106549872	106549992	-	ENSG00000252550	ENST00000516741	NA	NA	NA	NA	NA	inter
CUST_43313_PI429285431	1.1899569	A	0.90281576	A	1.22021987951166	0	lncRNA	48144-1_{1..611}	ENST00000601874 havana:lincRNA chromosome:GRCh37:19:15494013:15494623:-1 gene:ENSG00000269311 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000601874 havana:lincRNA chromosome:GRCh37:19:15494013:15494623:-1 gene:ENSG00000269311 gene_biotype:lincRNA transcript_biotype:lincRNA	chr19	 15494013	 15494623	-	ENSG00000269311	ENST00000601874	NA	NA	AKAP8	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30chr19:15484013-15490612"	NA	inner
LNCA_21_P0013392	0.9125153	A	0.9406785	A	0.980668062953921	0	lncRNA	ENST00000418395	NA	NA	NA	NA	XLOC_l2_013506	NA	ENST00000418395	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013506), lincRNA [TCONS_l2_00027170]"	chr7:91144665-91144724	hs|7q21.2	Agilent_HUMAN_G3V2	ENST00000418395	ENST00000418395	chr7	 91144665	 91144724	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35600_PI429285431	3.7077744	P	4.0992312	P	0.762359402831964	0	lncRNA	37014-2_{3001..3358}	n342738|AF015521|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5241|NULL|10.7800000|-0.0967252	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342738|AF015521|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5241|NULL|10.7800000|-0.0967252	chr11	  1154579	  1154936	+	NA	NA	NA	NA	MUC5AC	NA	chr11:1142474-1222364	inner
LNCA_21_P0006217	1.4184343	A	4.589269	P	0.111041071529733	0	lncRNA	TCONS_00016141	NA	NA	NA	NA	XLOC_007536	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007536), lincRNA [TCONS_00016141]"	chr9:120529521-120565310	hs|9q33.1	Agilent_HUMAN_G3V2	TCONS_00016141	TCONS_00016141	chr9	120529521	120565310	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29179_PI429285431	2.6529243	A	3.4447162	P	0.577626205340879	0	lncRNA	30924-2_{3001..4676}	n326692|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006615|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006615|0.0782032|-0.1653799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326692|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000006615|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000006615|0.0782032|-0.1653799	chr1	 17391864	 17393539	+	NA	NA	NA	NA	PADI2	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PADI2:range=chr1:17395539-174458665'pad=0,hg19_refFlat_PADI2:range=chr1:17395539-174458665'pad=0 3'pad=0 strand=- repeatMasking=none,-99.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90chr1:17393256-17406699"	NA	inner
CUST_15947_PI429285431	1.5432582	A	0.90351254	A	1.55805445781283	0	lncRNA	17644-1_{1..538}	lnc-TRIO-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIO-1:1	chr5	 13986967	 13987504	+	lnc-TRIO-1	lnc-TRIO-1:1	XLOC_004297	linc-TRIO-1	NA	NA	NA	inter
CUST_36147_PI429285431	9.218812	P	8.880057	P	1.26466475740827	0	lncRNA	37422-11_{30001..33000}	n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344709|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_258|NULL|-1.4157100|-0.3328159	chr8	128119803	128122802	-	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00"	NA	inter
CUST_48300_PI429285431	2.5977209	A	3.0793076	A	0.716189513560622	0	lncRNA	52158-1_{1..2106}	hg19_lincRNAsTranscripts_TCONS_l2_00000127 range=chr1:16973980-16976813 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000127 range=chr1:16973980-16976813 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16973980	 16976085	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50186_PI429285431	8.828748	P	8.664843	P	1.12031544013381	0	lncRNA	53911-1_{1..2333}	hg19_lincRNAsTranscripts_TCONS_l2_00028701 range=chr9:35406800-35451105 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028701 range=chr9:35406800-35451105 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 35406800	 35409132	+	NA	NA	NA	NA	UNC13B	NA	chr9:35396800-35405332	inter
LNCA_21_P0003069	1.875183	A	0.9164869	A	1.94355252849805	0	lncRNA	TCONS_00006331	NA	NA	NA	NA	XLOC_002951	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002951), lincRNA [TCONS_00006331]"	chr3:184433170-184433229	hs|3q27.1	Agilent_HUMAN_G3V2	TCONS_00006331	TCONS_00006331	chr3	184433170	184433229	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37883_PI429285431	4.5137143	P	4.0720367	P	1.35818273665283	0	lncRNA	38974-1_{1..593}	n346419|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1969|NULL|-1.5378900|-0.2569466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346419|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1969|NULL|-1.5378900|-0.2569466	chr3	 96068280	 96068872	-	NA	NA	NA	NA	NA	"hg19_refFlat_HNRNPK:range=chr9:86584322-865931675'pad=0,hg19_refFlat_HNRNPK:range=chr9:86584322-865931675'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_HNRNPK:range=chr9:86584265-865931675'pad=0,hg19_refFlat_HNRNPK:range=chr9:86584265-865931675'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30"	NA	inter
CUST_35262_PI429285431	3.3841143	P	3.0004854	A	1.30461932131663	0	lncRNA	36663-1_{1..3000}	n342269|BC040576|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4759|NULL|-0.9866860|-0.2873884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n342269|BC040576|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4759|NULL|-0.9866860|-0.2873884	chr22	 25675289	 25678288	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ADRBK1:range=chr11:67034171-670529215'pad=0,hg19_refFlat_ADRBK1:range=chr11:67034171-670529215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_ADRBK2:range=chr22:25961008-261184175'pad=0,hg19_refFlat_ADRBK2:range=chr22:25961008-261184175'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30"	NA	inter
CUST_40517_PI429285431	1.9178754	A	0.9191564	A	1.99822494509477	0	lncRNA	41281-2_{3001..3471}	n409548|NR_033933|lncRNA|Homosapiens||RefGeneNoncode|NR_033933||9.3667000|-0.2264760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409548|NR_033933|lncRNA|Homosapiens||RefGeneNoncode|NR_033933||9.3667000|-0.2264760	chr15	 30430989	 30431459	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005031	6.391241	P	6.390675	P	1.00039239827226	0	lncRNA	ENST00000511849	NA	NA	NA	NA	XLOC_005755	NA	ENST00000511849	THC2636593	NA	"BROAD Institute lincRNA (XLOC_005755), lincRNA [TCONS_00012198]"	chr6:62340266-62340207	hs|6q11.1	Agilent_HUMAN_G3V2	ENST00000511849	ENST00000511849	chr6	 62340207	 62340266	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23666_PI429285431	4.59977	P	4.5352707	P	1.04572194980871	0	lncRNA	25231-1_{1..1646}	lnc-RP11-158I9.5.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-158I9.5.1-1:1	chr11	118758220	118759865	-	lnc-RP11-158I9.5.1-1	lnc-RP11-158I9.5.1-1:1	ENSG00000245869.2	RP11-158I9.5	BCL9L	NA	chr11:118766849-118768451	inner
CUST_17278_PI429285431	4.786311	P	5.2388496	P	0.730755860862286	0	lncRNA	18996-1_{1..544}	lnc-ITM2C-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITM2C-1:2	chr2	231758710	231759253	+	lnc-ITM2C-1	lnc-ITM2C-1:2	XLOC_001897	linc-SPATA3	NA	NA	NA	inter
LNCA_21_P0013038	0.886144	A	0.8989203	A	0.991183241273263	0	lncRNA	TCONS_l2_00024431	NA	NA	NA	NA	XLOC_l2_012727	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012727), lincRNA [TCONS_l2_00024431]"	chr6:134828259-134828318	hs|6q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00024431	TCONS_l2_00024431	chr6	134828259	134828318	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9165_PI429285431	0.8975133	A	0.9048296	A	0.994941564476884	0	lncRNA	10683-1_{1..725}	lnc-FEZF2-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FEZF2-1:9	chr3	 62304272	 62304996	-	lnc-FEZF2-1	lnc-FEZF2-1:9	ENSG00000241472	RP11-204J18.3	C3orf14	NA	chr3:62305396-62314307	inter
CUST_23092_PI429285431	4.4369407	P	4.62627	P	0.877013344636632	0	lncRNA	24664-1_{1..539}	lnc-CLEC18B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLEC18B-2:2	chr16	 74366465	 74367003	-	lnc-CLEC18B-2	lnc-CLEC18B-2:2	ENSG00000259972.1	AC009120.6	NA	"hg19_refFlat_PSMD7:range=chr16:74330813-743396315'pad=0,hg19_refFlat_PSMD7:range=chr16:74330813-743396315'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80"	NA	inter
CUST_24182_PI429285431	2.0613413	A	1.8941932	A	1.12283668106645	0	lncRNA	25733-1_{1..349}	lnc-HSD17B11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSD17B11-1:1	chr4	 88266293	 88266641	-	lnc-HSD17B11-1	lnc-HSD17B11-1:1	ENSG00000255723.1	RP11-529H2.2	HSD17B11	NA	chr4:88257691-88276362	inner
CUST_34250_PI429285431	1.627784	A	1.1135014	A	1.42828372934841	0	lncRNA	35754-1_{1..3000}	n341106|AK125524|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3572|NULL|12.6542000|-0.1558765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341106|AK125524|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3572|NULL|12.6542000|-0.1558765	chr11	102980159	102983158	+	NA	NA	NA	NA	DYNC2H1	NA	chr11:102980160-103034200	inner
LNCA_21_P0008008	2.3381884	A	1.8224565	A	1.42971927299608	0	lncRNA	TCONS_00021678	NA	NA	NA	NA	XLOC_010683	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010683), lincRNA [TCONS_00021678]"	chr13:88237273-88237214	hs|13q31.2	Agilent_HUMAN_G3V2	TCONS_00021678	TCONS_00021678	chr13	 88237214	 88237273	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_385_PI429201921	0.91350925	A	0.8902148	A	1.01627754121598	0	lncRNA	245-3_{6001..9000}	TC22001135.hg.1	TCONS_l2_00018274-XLOC_l2_009405 // Broad TUCP // linc-MPPED1-1 chr22:+:43796336-43805687 // chr22 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00017796-XLOC_l2_009405 // Broad TUCP // linc-MPPED1-1 chr22:+:43800847-43805731 // chr22 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr22:+:43796336-43805687	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00018274-XLOC_l2_009405	linc-MPPED1-1	chr22	 43796336	 43805687	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42492_PI429285431	4.843046	P	5.111039	P	0.83047405356636	0	lncRNA	45260-1_{1..79}	ENST00000579216 ncrna:snoRNA chromosome:GRCh37:2:238778547:238778625:1 gene:ENSG00000263723 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579216 ncrna:snoRNA chromosome:GRCh37:2:238778547:238778625:1 gene:ENSG00000263723 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	238778547	238778625	+	ENSG00000263723	ENST00000579216	NA	NA	RAMP1	NA	chr2:238768547-238788625	inner
CUST_27773_PI429285431	1.4190855	A	1.2986436	A	1.08706778228873	0	lncRNA	29358-1_{1..538}	n324993|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079226|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079226|-1.1389900|-0.3277385	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324993|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079226|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079226|-1.1389900|-0.3277385	chr20	 38066532	 38067069	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42698_PI429285431	0.885196	A	2.8389044	A	0.258151806684637	0	lncRNA	45623-1_{1..127}	ENST00000362522 ncrna:snoRNA chromosome:GRCh37:18:75143519:75143645:-1 gene:ENSG00000199392 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362522 ncrna:snoRNA chromosome:GRCh37:18:75143519:75143645:-1 gene:ENSG00000199392 gene_biotype:snoRNA transcript_biotype:snoRNA	chr18	 75143519	 75143645	-	ENSG00000199392	ENST00000362522	NA	NA	NA	NA	NA	inter
CUST_48830_PI429285431	0.91188896	A	1.3641837	A	0.730879391602225	0	lncRNA	52668-1_{1..652}	hg19_lincRNAsTranscripts_TCONS_l2_00018429 range=chr3:5882859-6004991 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018429 range=chr3:5882859-6004991 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	  5882859	  5883510	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008429	2.500465	A	5.108179	P	0.164058926657504	0	lncRNA	TCONS_00022730	NA	NA	NA	NA	XLOC_011008	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011008), lincRNA [TCONS_00022730]"	chr14:45234728-45234277	hs|14q21.2	Agilent_HUMAN_G3V2	TCONS_00022730	TCONS_00022730	chr14	 45234277	 45234728	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010434	1.9150175	A	0.9818813	A	1.90942228192415	0	lncRNA	TCONS_00029667	NA	NA	NA	NA	XLOC_014332	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014332), lincRNA [TCONS_00029667]"	chr22:28071895-28071836	hs|22q12.1	Agilent_HUMAN_G3V2	TCONS_00029667	TCONS_00029667	chr22	 28071836	 28071895	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22181_PI429285431	0.9000006	A	1.3823723	A	0.715799926138967	0	lncRNA	23783-1_{1..551}	lnc-MAGEA4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAGEA4-1:1	chrX	151355280	151355830	+	lnc-MAGEA4-1	lnc-MAGEA4-1:1	ENSG00000231937.1	RP11-329E24.6	GABRA3	NA	chrX:151345280-151365329	inner
CUST_10215_PI429285431	1.029809	A	1.6915011	A	0.632136445401977	0	lncRNA	11740-2_{3001..4829}	lnc-C5orf32-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C5orf32-1:5	chr5	139555892	139557720	+	lnc-C5orf32-1	lnc-C5orf32-1:5	XLOC_004577	linc-C5orf32-1	C5orf32	NA	chr5:139554653-139563608	inter
CUST_17289_PI429285431	11.428385	P	11.531366	P	0.931107082240211	0	lncRNA	19007-1_{1..527}	lnc-DFNA5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DFNA5-2:1	chr7	 24295180	 24295706	-	lnc-DFNA5-2	lnc-DFNA5-2:1	XLOC_006377	linc-TRA2A-1	NA	NA	NA	inter
CUST_16585_PI429285431	0.8947463	A	0.8850992	A	1.00670926713126	0	lncRNA	18286-1_{1..435}	lnc-ANO5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANO5-2:1	chr11	 22141272	 22141706	+	lnc-ANO5-2	lnc-ANO5-2:1	XLOC_009087	linc-ANO5-1	NA	NA	NA	inter
CUST_44932_PI429285431	6.7871723	P	7.4441423	P	0.634208887528884	0	lncRNA	49445-2_{3001..6000}	"gi|195539386|ref|NR_003655.2| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide J4, pseudogene (POLR2J4), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|195539386|ref|NR_003655.2| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide J4, pseudogene (POLR2J4), non-coding RNA"	NA	NA	NA	NA	NA	NR_003655.2	NA	NA	NA	"hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_UBE2D4:range=chr7:43966132-439922945'pad=0,hg19_refFlat_UBE2D4:range=chr7:43966132-439922945'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-62.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20"	NA	Unknown
LNCA_19_P00320108	7.7630296	P	7.45615	P	1.23702923820249	0	lncRNA	ENST00000435466	NA	NA	NA	NA	XLOC_006561	NA	ENST00000435466	NA	NA	"BROAD Institute lincRNA (XLOC_006561), lincRNA [TCONS_00013225]"	chr7:110174767-110174708	hs|7q31.1	Agilent_HUMAN_G3V2	ENST00000435466	ENST00000435466	chr7	110174708	110174767	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4058_PI429285431	0.882291	A	0.888179	A	0.995927066385676	0	lncRNA	4020-1_{1..506}	"transcript_id ""ENST00000545912.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000545912.1"" | genecode_v17"	chr11	 95431250	 95431755	+	ENSG00000255605.1	ENST00000545912.1	RP11-644L4.1	RP11-644L4.1-001	NA	NA	NA	inter
CUST_431_PI429285431	2.3620043	A	1.7785326	A	1.49845078409961	0	lncRNA	423-1_{1..446}	"transcript_id ""ENST00000431525.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431525.1"" | genecode_v17"	chr1	147169914	147170359	+	ENSG00000227139.1	ENST00000431525.1	RP11-533N14.3	RP11-533N14.3-001	NA	NA	NA	inter
CUST_19363_PI429285431	14.609609	P	14.856771	P	0.842552214135023	0	lncRNA	21026-1_{1..614}	lnc-CRELD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-CRELD1-1:1	chr3	  9996288	  9996901	+	lnc-CRELD1-1	lnc-CRELD1-1:1	ENSG00000230082.1	PRRT3-AS1	TMEM111	"hg19_refFlat_PRRT3:range=chr3:9987911-99917995'pad=0,hg19_refFlat_PRRT3:range=chr3:9987911-99917995'pad=0 3'pad=0 strand=- repeatMasking=none,-104.30chr3:10005636-10006471"	NA	inter
CUST_9556_PI429285431	1.3216878	A	1.0854224	A	1.17793946489463	0	lncRNA	11071-1_{1..2312}	lnc-NCOA3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCOA3-5:1	chr20	 46524071	 46526382	+	lnc-NCOA3-5	lnc-NCOA3-5:1	XLOC_013543	linc-ARFGEF2-12	NA	NA	NA	inter
CUST_17280_PI429285431	2.1537414	A	1.9642079	A	1.14039490594753	0	lncRNA	18998-1_{1..333}	lnc-PDGFRA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDGFRA-1:1	chr4	 55224202	 55224534	+	lnc-PDGFRA-1	lnc-PDGFRA-1:1	XLOC_003539	linc-KIT-2	NA	NA	NA	inter
LNCA_21_P0013623	0.90772134	A	0.9262966	A	0.987207144129503	0	lncRNA	CR627240	NA	CR627240	NA	Hs.533220	XLOC_l2_015132	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015132), lincRNA [TCONS_l2_00029224]"	chr9:23514638-23513382	hs|9p21.3	Agilent_HUMAN_G3V2	CR627240	CR627240	chr9	 23513382	 23514638	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8933_PI429285431	0.89380956	A	0.92500687	A	0.978607802075746	0	lncRNA	10468-1_{1..2824}	lnc-FAM168B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM168B-1:1	chr2	131593883	131596706	-	lnc-FAM168B-1	lnc-FAM168B-1:1	ENSG00000233221	XLOC_002322	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50"	NA	inter
LNCA_21_P0011709	4.189407	P	4.9213057	P	0.602110966840341	0	lncRNA	TCONS_l2_00012685	NA	NA	NA	NA	XLOC_l2_006812	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006812), lincRNA [TCONS_l2_00012685]"	chr19:53722479-53722538	hs|19q13.42	Agilent_HUMAN_G3V2	TCONS_l2_00012685	TCONS_l2_00012685	chr19	 53722479	 53722538	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26596_PI429285431	0.9129846	A	1.2285116	A	0.803557406793643	0	lncRNA	28099-1_{1..742}	lnc-C7orf13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C7orf13-1:1	chr7	156450149	156450890	-	lnc-C7orf13-1	lnc-C7orf13-1:1	ENSG00000224903.1	AC005534.8	RNF32	"hg19_refFlat_RNF32:range=chr7:156436572-1564693495'pad=0,hg19_refFlat_RNF32:range=chr7:156436572-1564693495'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10chr7:156440149-156460387"	NA	inner
CUST_23327_PI429285431	1.0341606	A	0.94833744	A	1.06129311175564	0	lncRNA	24898-1_{1..443}	lnc-ADAMTS18-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAMTS18-5:1	chr16	 78275095	 78275537	-	lnc-ADAMTS18-5	lnc-ADAMTS18-5:1	ENSG00000260969.1	RP11-190D6.2	WWOX	NA	chr16:78265095-78285115	inner
CUST_45167_PI429285431	4.785285	P	3.2032838	P	2.99384846379749	0	lncRNA	49642-1_{1..808}	"gi|310120196|ref|XR_110878.1| PREDICTED: Homo sapiens uncharacterized LOC100507439 (LOC100507439), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310120196|ref|XR_110878.1| PREDICTED: Homo sapiens uncharacterized LOC100507439 (LOC100507439), misc_RNA"	NA	NA	NA	NA	NA	XR_110878.1	NA	NA	NA	NA	NA	Unknown
CUST_42380_PI429285431	0.9104155	A	0.90824974	A	1.00150231778819	0	lncRNA	45065-1_{1..102}	ENST00000516092 ncrna:snoRNA chromosome:GRCh37:13:96366931:96367032:-1 gene:ENSG00000251901 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516092 ncrna:snoRNA chromosome:GRCh37:13:96366931:96367032:-1 gene:ENSG00000251901 gene_biotype:snoRNA transcript_biotype:snoRNA	chr13	 96366931	 96367032	-	ENSG00000251901	ENST00000516092	NA	NA	DNAJC3	NA	chr13:96356931-96377032	inner
CUST_50526_PI429285431	3.382289	P	3.1021388	P	1.2143213016629	0	lncRNA	54222-1_{1..575}	hg19_lincRNAsTranscripts_TCONS_l2_00030627 range=chrX:149007301-149008144 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030627 range=chrX:149007301-149008144 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	149007301	149007875	-	NA	NA	NA	NA	MAGEA8	NA	chrX:149009941-149014609	inter
LNCA_21_P0014223	0.89710575	A	2.1212401	A	0.428054278151934	0	lncRNA	XR_108915	XR_108915	XR_108915	NA	Hs.450280	LOC100505613	uncharacterized LOC100505613	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505613 (LOC100505613), miscRNA [XR_108915]"	chr8:65713795-65713736	hs|8q12.3	Agilent_HUMAN_G3V2	XR_108915	XR_108915	chr8	 65713736	 65713795	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30785_PI429285431	1.7810214	A	1.0940388	A	1.60991285835103	0	lncRNA	32572-1_{1..327}	n336647|Z49137|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327448|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327448|2.1080800|-0.0331212	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336647|Z49137|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327448|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327448|2.1080800|-0.0331212	chr2	 89160078	 89160404	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39365_PI429285431	3.991575	P	4.748561	P	0.59173125304432	0	lncRNA	40329-1_{1..3000}	n386469|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lsj.1||0.1247360|-0.1438681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386469|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010lsj.1||0.1247360|-0.1438681	chr8	 12245247	 12248246	+	NA	NA	NA	NA	FAM86B2	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr8:12278528-12289968"	NA	inter
CUST_9550_PI429285431	6.012985	P	6.1351137	P	0.918830912716099	0	lncRNA	11065-1_{1..451}	lnc-ARHGEF11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGEF11-1:1	chr1	157021433	157021883	-	lnc-ARHGEF11-1	lnc-ARHGEF11-1:1	XLOC_001050	linc-ARHGEF11	ARHGEF11	NA	chr1:157011433-157015162	inter
CUST_48515_PI429285431	0.8985078	A	0.8952974	A	1.00222775748093	0	lncRNA	52368-1_{1..558}	hg19_lincRNAsTranscripts_TCONS_l2_00015926 range=chr2:114285919-114300285 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015926 range=chr2:114285919-114300285 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	114285919	114286476	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38799_PI429285431	1.2645473	A	1.1182181	A	1.10674986695037	0	lncRNA	39793-1_{1..3000}	n384504|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ifc.2||-0.4249850|-0.4129936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n384504|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ifc.2||-0.4249850|-0.4129936	chr4	124571421	124574420	+	NA	NA	NA	NA	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60"	NA	inter
LNCA_21_P0005960	2.4060347	A	2.0270724	A	1.30040616434741	0	lncRNA	TCONS_00015403	NA	NA	NA	NA	XLOC_006993	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006993), lincRNA [TCONS_00015403]"	chr8:8085823-8077658	hs|8p23.1	Agilent_HUMAN_G3V2	TCONS_00015403	TCONS_00015403	chr8	  8077658	  8085823	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30464_PI429285431	6.5969667	P	6.4128084	P	1.1361539226624	0	lncRNA	32244-1_{1..532}	n335608|CR597946|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000277141|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000277141|0.6605670|-0.2151088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335608|CR597946|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000277141|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000277141|0.6605670|-0.2151088	chr2	 24384425	 24384956	+	NA	NA	NA	NA	LOC375190	NA	chr2:24374425-24392507	inner
CUST_7297_PI429285431	2.5645285	A	1.5863116	A	1.97002904483266	0	lncRNA	8315-1_{1..287}	"transcript_id ""ENST00000517018.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517018.1"" | genecode_v17"	chr12	 96820978	 96821264	-	ENSG00000252827.1	ENST00000517018.1	RN7SKP11	RN7SKP11-201	NA	NA	NA	inter
CUST_7336_PI429285431	1.1869947	A	0.87487197	A	1.24153310419722	0	lncRNA	8826-1_{1..315}	"transcript_id ""ENST00000362821.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000362821.1"" | genecode_v17"	chr20	 37390171	 37390485	+	ENSG00000199691.1	ENST00000362821.1	RN7SKP173	RN7SKP173-201	ACTR5	NA	chr20:37380171-37400485	inner
LNCA_21_P0007814	4.23483	P	3.5095115	P	1.65326558312905	0	lncRNA	TCONS_00021014	NA	NA	NA	NA	XLOC_010275	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010275), lincRNA [TCONS_00021014]"	chr12:133169756-133169697	hs|12q24.33	Agilent_HUMAN_G3V2	TCONS_00021014	TCONS_00021014	chr12	133169697	133169756	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37492_PI429285431	3.5133834	A	2.250786	A	2.39927312762598	0	lncRNA	38594-1_{1..1811}	n345954|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1503|NULL|-1.3122200|-0.1815023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345954|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1503|NULL|-1.3122200|-0.1815023	chr20	 29611870	 29613680	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26574_PI429285431	1.9495921	A	1.0594453	A	1.85336470146946	0	lncRNA	28078-1_{1..446}	lnc-RP11-43D2.2.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-43D2.2.1-3:1	chr5	124065403	124065848	+	lnc-RP11-43D2.2.1-3	lnc-RP11-43D2.2.1-3:1	ENSG00000250530.1	RP11-436H11.3	ZNF608	NA	chr5:124055403-124075848	inner
CUST_34167_PI429285431	0.9097963	A	1.1880549	A	0.824585730134155	0	lncRNA	35684-1_{1..1697}	n341012|AK026283|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3478|NULL|-1.1739400|-0.3127231	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341012|AK026283|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3478|NULL|-1.1739400|-0.3127231	chr11	 36399073	 36400769	+	NA	NA	NA	NA	PRR5L	NA	chr11:36389073-36410759	inner
LNCA_21_P0002571	3.1065333	P	4.519789	P	0.375463429550148	0	lncRNA	TCONS_00004690	NA	NA	NA	NA	XLOC_001333	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001333), lincRNA [TCONS_00004690]"	chr2:8810361-8810420	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_00004690	TCONS_00004690	chr2	  8810361	  8810420	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005049	1.8516209	A	3.702293	P	0.277263170934272	0	lncRNA	TCONS_00012247	NA	NA	NA	NA	XLOC_005803	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005803), lincRNA [TCONS_00012247]"	chr6:110858856-110858797	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00012247	TCONS_00012247	chr6	110858797	110858856	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21291_PI429285431	2.9037898	A	2.5503821	A	1.27757474583395	0	lncRNA	22916-1_{1..563}	lnc-UBLCP1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBLCP1-7:1	chr5	158411716	158412278	+	lnc-UBLCP1-7	lnc-UBLCP1-7:1	ENSG00000253811.1	CTD-2363C16.1	EBF1	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr5:158401716-158421797"	NA	inner
LNCA_21_P0008353	1.0348132	A	3.356789	P	0.199993386776475	0	lncRNA	TCONS_00022543	NA	NA	NA	NA	XLOC_010860	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010860), lincRNA [TCONS_00022543]"	chr14:70282758-70282817	hs|14q24.2	Agilent_HUMAN_G3V2	TCONS_00022543	TCONS_00022543	chr14	 70282758	 70282817	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31023_PI429285431	2.5840862	A	2.6653574	A	0.94522441533102	0	lncRNA	32812-1_{1..306}	n337232|BC119798|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000388107|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000388107|-1.0854500|-0.3038521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337232|BC119798|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000388107|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000388107|-1.0854500|-0.3038521	chr7	142577445	142577750	+	NA	NA	NA	NA	EPHB6	NA	chr7:142567445-142568847	inner
CUST_45053_PI429285431	0.89046127	A	1.0588992	A	0.889805591815599	0	lncRNA	49545-1_{1..1079}	"gi|410170529|ref|XR_171047.1| PREDICTED: Homo sapiens uncharacterized LOC100996795 (LOC100996795), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170529|ref|XR_171047.1| PREDICTED: Homo sapiens uncharacterized LOC100996795 (LOC100996795), misc_RNA"	NA	NA	NA	NA	NA	XR_171047.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002350	2.493758	A	2.5464709	A	0.964121651323792	0	lncRNA	ENST00000446558	NA	NA	NA	NA	RPL37A	ribosomal protein L37a	ENST00000446558	NA	GO:0010467|GO:0003735|GO:0016070|GO:0016071|GO:0019083|GO:0019058|GO:0006415|GO:0006412|GO:0046872|GO:0005829|GO:0006414|GO:0005622|GO:0031018|GO:0005840|GO:0016032|GO:0022625|GO:0044267	"BROAD Institute lincRNA (XLOC_001857), lincRNA [TCONS_00004020]"	chr2:217443814-217443873	hs|2q35	Agilent_HUMAN_G3V2	ENST00000446558	ENST00000446558	chr2	217443814	217443873	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32776_PI429285431	2.7848282	A	2.884523	A	0.933230394164199	0	lncRNA	34410-1_{1..1211}	n339414|BC039365|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1846|NULL|-0.8739040|-0.2624981	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n339414|BC039365|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1846|NULL|-0.8739040|-0.2624981	chr3	107560508	107561718	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00317878	0.8680957	A	0.86785936	A	1.00016383182362	0	lncRNA	XR_132670	XR_132670	XR_132670	NA	NA	LOC100652730	uncharacterized LOC100652730	ENST00000412500	THC2635964	NA	"PREDICTED: Homo sapiens hypothetical LOC100652730 (LOC100652730), miscRNA [XR_132670]"	chr20:61405767-61405708	hs|20q13.33	Agilent_HUMAN_G3V2	XR_132670	XR_132670	chr20	 61405708	 61405767	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5870_PI429285431	5.0301704	P	5.236281	P	0.866871104826887	0	lncRNA	5800-1_{1..386}	"transcript_id ""ENST00000589730.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589730.1"" | genecode_v17"	chr17	 43448768	 43449153	-	ENSG00000267446.1	ENST00000589730.1	CTB-39G8.2	CTB-39G8.2-001	NA	NA	NA	inter
CUST_8181_PI429285431	2.0819256	A	0.9050144	A	2.26092196689646	0	lncRNA	9781-1_{1..1347}	lnc-CA8-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CA8-3:5	chr8	 61326115	 61327461	-	lnc-CA8-3	lnc-CA8-3:5	ENSG00000251396	ENSG00000251396.2	NA	NA	NA	inter
CUST_7964_PI429285431	0.9137448	A	0.95092356	A	0.974558868754065	0	lncRNA	9576-1_{1..1934}	lnc-DRD2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DRD2-3:1	chr11	112833932	112835865	-	lnc-DRD2-3	lnc-DRD2-3:1	ENSG00000247416	RP11-629G13.1	NCAM1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00chr11:112831969-112844182"	NA	inner
CUST_45866_PI429285431	2.131169	A	1.326011	A	1.74733714492181	0	lncRNA	50195-1_{1..3000}	"gi|253735744|ref|NR_028027.1| Homo sapiens CREB/ATF bZIP transcription factor (CREBZF), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|253735744|ref|NR_028027.1| Homo sapiens CREB/ATF bZIP transcription factor (CREBZF), transcript variant 5, non-coding RNA"	Chr11	 85368608	 85371607	-	58487	NR_028027.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014680	0.9127656	A	0.9468615	A	0.97664360655506	0	lncRNA	XR_111398	XR_111398	XR_111398	NA	NA	LOC100508885	uncharacterized LOC100508885	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100508885 (LOC100508885), miscRNA [XR_111398]"	NA	NA	Agilent_HUMAN_G3V2	XR_111398	XR_111398	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1101_PI429285431	1.868309	A	1.9679041	A	0.933294888934534	0	lncRNA	1090-1_{1..928}	"transcript_id ""ENST00000600064.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600064.1"" | genecode_v17"	chr2	145425579	145426506	+	ENSG00000226674.3	ENST00000600064.1	AC074093.1	AC074093.1-032	NA	NA	NA	inter
LNCA_21_P0010292	4.7766895	P	5.2398047	P	0.725418176560203	0	lncRNA	TCONS_00029165	NA	NA	NA	NA	XLOC_014105	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014105), lincRNA [TCONS_00029165]"	chr21:44891412-44891353	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029165	TCONS_00029165	chr21	 44891353	 44891412	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9544_PI429285431	9.346538	P	9.562179	P	0.861163453453045	0	lncRNA	11057-1_{1..758}	lnc-MFSD11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MFSD11-2:1	chr17	 74818946	 74819703	+	lnc-MFSD11-2	lnc-MFSD11-2:1	XLOC_012313	linc-MGAT5B-2	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60"	NA	inter
CUST_15008_PI429285431	1.0192367	A	0.9219439	A	1.06976417823311	0	lncRNA	16670-1_{1..1301}	lnc-SULF2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SULF2-3:2	chr20	 46617351	 46618651	-	lnc-SULF2-3	lnc-SULF2-3:2	XLOC_013772	linc-SULF2-4	NA	NA	NA	inter
LNCA_21_P0014892	7.939358	P	7.371778	P	1.48203549412989	0	lncRNA	XR_132852	XR_132852	XR_132852	NA	Hs.669724	LOC100506027	uncharacterized LOC100506027	NA	THC2538174	NA	"PREDICTED: Homo sapiens hypothetical LOC100506027, transcript variant 2 (LOC100506027), miscRNA [XR_132852]"	chr7:94060052-94059993	hs|7q21.3	Agilent_HUMAN_G3V2	XR_132852	XR_132852	chr7	 94059993	 94060052	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8730_PI429285431	0.9081423	A	0.9201434	A	0.99171597459236	0	lncRNA	10273-1_{1..738}	lnc-CAPN7-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CAPN7-1:3	chr3	 15300053	 15300790	+	lnc-CAPN7-1	lnc-CAPN7-1:3	ENSG00000224660	AC087590.3	SH3BP5	"hg19_refFlat_SH3BP5:range=chr3:15297593-153112435'pad=0,hg19_refFlat_SH3BP5:range=chr3:15297593-153112435'pad=0 3'pad=0 strand=- repeatMasking=none,-101.80;hg19_refFlat_SH3BP5:range=chr3:15297593-153739155'pad=0,hg19_refFlat_SH3BP5:range=chr3:15297593-153739155'pad=0 3'pad=0 strand=- repeatMasking=none,-101.80chr3:15296357-15310563"	NA	inner
CUST_32483_PI429285431	0.8859904	A	0.8931136	A	0.995074743055003	0	lncRNA	34152-1_{1..2282}	n339088|AK127195|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1518|NULL|-1.2252200|-0.3385304	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339088|AK127195|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1518|NULL|-1.2252200|-0.3385304	chr2	202372136	202374417	+	NA	NA	NA	NA	ALS2CR11	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50chr2:202362136-202384417"	NA	inner
LNCA_21_P0002360	0.88404655	A	0.8953484	A	0.99219675913538	0	lncRNA	TCONS_00004036	NA	NA	NA	NA	XLOC_001875	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001875), lincRNA [TCONS_00004036]"	chr2:222548206-222548265	hs|2q36.1	Agilent_HUMAN_G3V2	TCONS_00004036	TCONS_00004036	chr2	222548206	222548265	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46363_PI429285431	1.823057	A	1.3420565	A	1.39571124783874	0	lncRNA	50585-1_{1..420}	"gi|310123141|ref|XR_110234.1| PREDICTED: Homo sapiens uncharacterized LOC100506792, transcript variant 2 (LOC100506792), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123141|ref|XR_110234.1| PREDICTED: Homo sapiens uncharacterized LOC100506792, transcript variant 2 (LOC100506792), misc_RNA"	NA	NA	NA	NA	NA	XR_110234.1	NA	NA	NA	NA	NA	Unknown
CUST_20753_PI429285431	1.8439772	A	2.2214258	A	0.769797771614047	0	lncRNA	22387-1_{1..1470}	lnc-CDYL2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDYL2-6:1	chr16	 80596926	 80598395	-	lnc-CDYL2-6	lnc-CDYL2-6:1	ENSG00000259867.1	RP11-525K10.3	NA	NA	NA	inter
CUST_4149_PI429285431	4.7729983	P	4.9749346	P	0.86938294552109	0	lncRNA	4107-1_{1..1727}	"transcript_id ""ENST00000543308.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000543308.1"" | genecode_v17"	chr12	  5475214	  5476940	-	ENSG00000256218.1	ENST00000543308.1	RP11-1038A11.2	RP11-1038A11.2-001	NA	"hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70"	NA	inter
CUST_14979_PI429285431	7.9835963	P	7.995846	P	0.991545100399253	0	lncRNA	16642-1_{1..880}	lnc-PCBD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCBD1-2:1	chr10	 72765440	 72766319	-	lnc-PCBD1-2	lnc-PCBD1-2:1	XLOC_008847	linc-PCBD1-4	NA	NA	NA	inter
CUST_37866_PI429285431	4.7447596	P	5.0592804	P	0.804118039124892	0	lncRNA	38958-1_{1..2677}	n346401|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1951|NULL|-1.2933700|-0.1415523	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346401|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1951|NULL|-1.2933700|-0.1415523	chr1	 16971690	 16974366	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001580	1.3793387	A	0.88170063	A	1.41190015548754	0	lncRNA	TCONS_00001678	NA	NA	NA	NA	XLOC_001020	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001020), lincRNA [TCONS_00001678]"	chr1:150507602-150507543	hs|1q21.3	Agilent_HUMAN_G3V2	TCONS_00001678	TCONS_00001678	chr1	150507543	150507602	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9300_PI429285431	2.247928	A	2.4265795	A	0.883528452422296	0	lncRNA	10805-1_{1..951}	lnc-CYS1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CYS1-3:1	chr2	 10149520	 10150470	-	lnc-CYS1-3	lnc-CYS1-3:1	XLOC_001983	linc-YWHAQ-4	GRHL1	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50chr2:10139520-10142412"	NA	inter
CUST_50296_PI429285431	1.1326485	A	1.3878081	A	0.837894436387686	0	lncRNA	54015-1_{1..533}	hg19_lincRNAsTranscripts_TCONS_l2_00028882 range=chr9:90477703-90481196 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028882 range=chr9:90477703-90481196 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 90477703	 90478235	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22002_PI429285431	1.8563195	A	1.2234207	A	1.55067763427843	0	lncRNA	23611-1_{1..690}	lnc-CCRN4L-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCRN4L-4:3	chr4	139095626	139096315	+	lnc-CCRN4L-4	lnc-CCRN4L-4:3	ENSG00000250033.1	SLC7A11-AS1	SLC7A11	NA	chr4:139085626-139105731	inter
LNCA_21_P0004177	2.9084015	P	0.87142664	A	4.10384106833961	0	lncRNA	TCONS_00009772	NA	NA	NA	NA	XLOC_004980	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004980), lincRNA [TCONS_00009772]"	chr5:123731702-123731643	hs|5q23.2	Agilent_HUMAN_G3V2	TCONS_00009772	TCONS_00009772	chr5	123731643	123731702	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9905_PI429285431	1.6138853	A	0.92240393	A	1.6149409007226	0	lncRNA	11429-1_{1..1695}	lnc-COL4A1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL4A1-2:5	chr13	110698132	110699826	-	lnc-COL4A1-2	lnc-COL4A1-2:5	XLOC_010719	linc-IRS2-2	NA	NA	NA	inter
LNCA_21_P0004564	1.6356266	A	0.8702676	A	1.69979292185	0	lncRNA	TCONS_00010980	NA	NA	NA	NA	XLOC_004913	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004913), lincRNA [TCONS_00010980]"	chr5:86370060-86370001	hs|5q14.3	Agilent_HUMAN_G3V2	TCONS_00010980	TCONS_00010980	chr5	 86370001	 86370060	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15719_PI429285431	6.093499	P	6.0681214	P	1.01774603433307	0	lncRNA	17405-1_{1..3000}	lnc-BTBD10-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTBD10-3:8	chr11	 13011003	 13014002	-	lnc-BTBD10-3	lnc-BTBD10-3:8	XLOC_009378	linc-DKK3-3	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30"	NA	inter
CUST_47474_PI429285431	6.0196056	P	6.907674	P	0.540337082346611	0	lncRNA	51497-1_{1..1428}	"gi|213688384|ref|NR_024494.1| Homo sapiens breakpoint cluster region pseudogene 3 (BCRP3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|213688384|ref|NR_024494.1| Homo sapiens breakpoint cluster region pseudogene 3 (BCRP3), non-coding RNA"	Chr22	 25028882	 25030309	+	644165	NR_024494.1	NA	NA	NA	NA	NA	inter
CUST_8991_PI429285431	0.9058126	A	0.9109831	A	0.996422497069847	0	lncRNA	10522-1_{1..988}	lnc-RP11-432B6.3.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-432B6.3.1-1:3	chr3	159733483	159734470	-	lnc-RP11-432B6.3.1-1	lnc-RP11-432B6.3.1-1:3	ENSG00000244040	CTD-2049J23.2	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-32.17;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-27.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10"	NA	inter
CUST_37483_PI429285431	6.4113817	P	6.560686	P	0.901685170660769	0	lncRNA	38583-1_{1..830}	n345943|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1492|NULL|-1.5128500|-0.0726649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345943|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1492|NULL|-1.5128500|-0.0726649	chr1	    16996	    17825	-	NA	NA	NA	NA	LOC100652771	NA	chr1:12190-13639	inter
CUST_5171_PI429285431	0.8894667	A	0.8838565	A	1.00389626509441	0	lncRNA	5112-1_{1..439}	"transcript_id ""ENST00000558792.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558792.1"" | genecode_v17"	chr15	 48095581	 48096019	-	ENSG00000259572.1	ENST00000558792.1	RP11-198M11.2	RP11-198M11.2-001	NA	NA	NA	inter
CUST_25821_PI429285431	0.9092996	A	1.9891207	A	0.473087484480518	0	lncRNA	27342-1_{1..992}	lnc-OAZ3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OAZ3-1:2	chr1	151766291	151767282	+	lnc-OAZ3-1	lnc-OAZ3-1:2	ENSG00000203288.3	RP11-98D18.9	TDRKH	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20chr1:151756291-151763010"	NA	inter
LNCA_21_P0013304	2.7811463	A	2.8645754	A	0.943811660011473	0	lncRNA	TCONS_l2_00026553	NA	NA	NA	NA	XLOC_l2_013808	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013808), lincRNA [TCONS_l2_00026553]"	chr7:45779081-45779022	hs|7p12.3	Agilent_HUMAN_G3V2	TCONS_l2_00026553	TCONS_l2_00026553	chr7	 45779022	 45779081	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009082	4.3961215	P	3.8965366	P	1.4138067157506	0	lncRNA	TCONS_00024759	NA	NA	NA	NA	XLOC_012043	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012043), lincRNA [TCONS_00024759]"	chr16:86224206-86224147	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024759	TCONS_00024759	chr16	 86224147	 86224206	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004802	0.87243146	A	0.8739995	A	0.998913707937851	0	lncRNA	ENST00000431017	NA	NA	NA	NA	XLOC_005916	NA	ENST00000431017	THC2689572	NA	"BROAD Institute lincRNA (XLOC_005916), lincRNA [TCONS_00011613]"	chr6:166188398-166186712	hs|6q27	Agilent_HUMAN_G3V2	ENST00000431017	ENST00000431017	chr6	166186712	166188398	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21230_PI429285431	0.87962383	A	0.87582934	A	1.00263360189788	0	lncRNA	22856-1_{1..417}	lnc-KLHL15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-KLHL15-1:1	chrX	 24167672	 24168088	-	lnc-KLHL15-1	lnc-KLHL15-1:1	ENSG00000234230.1	ZFX-AS1	ZFX	NA	chrX:24167762-24177771	inner
CUST_7819_PI429285431	3.1580493	P	3.3954396	P	0.848278381376416	0	lncRNA	9443-1_{1..582}	lnc-ZFC3H1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZFC3H1-6:1	chr12	 72668600	 72669181	-	lnc-ZFC3H1-6	lnc-ZFC3H1-6:1	ENSG00000236333	AC087886.1	TRHDE	"hg19_refFlat_TRHDE:range=chr12:72666559-730569755'pad=0,hg19_refFlat_TRHDE:range=chr12:72666559-730569755'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00chr12:72666529-72678687"	NA	inner
LNCA_21_P0010082	0.91266227	A	1.0833696	A	0.888407002815235	0	lncRNA	TCONS_00028504	NA	NA	NA	NA	XLOC_013467	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013467), lincRNA [TCONS_00028504]"	chr20:16611194-16611253	hs|20p12.1	Agilent_HUMAN_G3V2	TCONS_00028504	TCONS_00028504	chr20	 16611194	 16611253	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28139_PI429285431	11.526444	P	11.724574	P	0.871679689696581	0	lncRNA	29765-1_{1..517}	n325416|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323749|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323749|-0.9304350|-0.1942148	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325416|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323749|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323749|-0.9304350|-0.1942148	chr2	 16054621	 16055137	-	NA	NA	NA	NA	MYCN	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-62.80chr2:16080683-16087129"	NA	inner
CUST_46008_PI429285431	5.62489	P	5.7222815	P	0.934721510646384	0	lncRNA	50292-1_{1..964}	"gi|333360903|ref|NR_038228.1| Homo sapiens uncharacterized LOC100506451 (LOC100506451), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333360903|ref|NR_038228.1| Homo sapiens uncharacterized LOC100506451 (LOC100506451), transcript variant 2, non-coding RNA"	Chr12	 26107587	 26108550	-	100506451	NR_038228.1	NA	NA	NA	NA	NA	inter
CUST_36907_PI429285431	2.6984408	A	3.74277	P	0.484870302876476	0	lncRNA	38067-1_{1..957}	n345380|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_929|NULL|-1.3003900|-0.1678534	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345380|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_929|NULL|-1.3003900|-0.1678534	chr20	   837118	   838074	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006328	3.8766642	P	4.4696217	P	0.662982410498173	0	lncRNA	TCONS_00016491	NA	NA	NA	NA	XLOC_007868	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007868), lincRNA [TCONS_00016491]"	chr9:132263284-132263225	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_00016491	TCONS_00016491	chr9	132263225	132263284	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008732	4.0893784	P	5.0436735	P	0.516093691149731	0	lncRNA	TCONS_00023655	NA	NA	NA	NA	XLOC_011456	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011456), lincRNA [TCONS_00023655]"	chr15:43513571-43513512	hs|15q15.2	Agilent_HUMAN_G3V2	TCONS_00023655	TCONS_00023655	chr15	 43513512	 43513571	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50429_PI429285431	6.364468	P	7.009876	P	0.639311965058096	0	lncRNA	54133-1_{1..736}	hg19_lincRNAsTranscripts_TCONS_l2_00030176 range=chrX:36737916-36762061 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030176 range=chrX:36737916-36762061 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 36737916	 36738651	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009787	5.25061	P	5.2837734	P	0.977275073723895	0	lncRNA	AK125858	NA	AK125858	NA	NA	XLOC_013045	NA	NA	THC2525078	NA	"BROAD Institute lincRNA (XLOC_013045), lincRNA [TCONS_00027518]"	chr19:35342929-35342988	hs|19q13.11	Agilent_HUMAN_G3V2	AK125858	AK125858	chr19	 35342929	 35342988	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013849	0.9085198	A	0.92899615	A	0.985907123281876	0	lncRNA	ENST00000418369	NA	NA	NA	NA	XLOC_l2_015573	NA	ENST00000418369	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015573), lincRNA [TCONS_l2_00030720]"	chrX:90563815-90563874	hs|Xq21.31	Agilent_HUMAN_G3V2	ENST00000418369	ENST00000418369	chrX	 90563815	 90563874	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35173_PI429285431	0.8958972	M	0.9025589	A	0.995393105868491	0	lncRNA	36575-1_{1..1007}	n342152|BC020896|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4639|NULL|-1.0518000|-0.3674480	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342152|BC020896|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4639|NULL|-1.0518000|-0.3674480	chr6	147886864	147887870	+	NA	NA	NA	NA	SAMD5	NA	chr6:147876864-147891157	inner
LNCA_21_P0009066	0.89988595	A	0.91793364	A	0.987568215664175	0	lncRNA	TCONS_00024736	NA	NA	NA	NA	XLOC_012017	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012017), lincRNA [TCONS_00024736]"	chr16:79748728-79748669	hs|16q23.2	Agilent_HUMAN_G3V2	TCONS_00024736	TCONS_00024736	chr16	 79748669	 79748728	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29810_PI429285431	1.8250649	A	1.7914406	A	1.02358030964637	0	lncRNA	31573-1_{1..416}	n333525|BC039537|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000095799|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000095799|-1.3027700|-0.3921027	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333525|BC039537|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000095799|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000095799|-1.3027700|-0.3921027	chr8	 54955498	 54955913	-	NA	NA	NA	NA	LYPLA1	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00chr8:54958938-54967513"	NA	inter
CUST_38761_PI429285431	1.6519959	A	4.2800217	P	0.161765313903471	0	lncRNA	39753-1_{1..1289}	n384342|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ezd.2||2.3503100|-0.3326402	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n384342|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ezd.2||2.3503100|-0.3326402	chr3	151488243	151489531	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15180_PI429285431	0.8877504	A	2.7177536	A	0.281263997308001	0	lncRNA	16845-1_{1..709}	lnc-SH2D4A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SH2D4A-2:2	chr8	 19000096	 19000804	+	lnc-SH2D4A-2	lnc-SH2D4A-2:2	XLOC_006730	linc-SH2D4A-2	NA	NA	NA	inter
LNCA_21_P0005782	2.4810696	A	3.0460808	P	0.675950168924611	0	lncRNA	TCONS_00014899	NA	NA	NA	NA	XLOC_006972	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006972), lincRNA [TCONS_00014899]"	chr8:1236462-1236403	hs|8p23.3	Agilent_HUMAN_G3V2	TCONS_00014899	TCONS_00014899	chr8	  1236403	  1236462	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19652_PI429285431	4.2862253	P	4.439363	P	0.899292473852054	0	lncRNA	21308-1_{1..888}	lnc-AMFR-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AMFR-4:2	chr16	 56223414	 56224301	-	lnc-AMFR-4	lnc-AMFR-4:2	ENSG00000246379.2	RP11-461O7.1	GNAO1	NA	chr16:56225251-56233919	inter
LNCA_21_P0010487	4.9314957	P	4.7204933	P	1.15749214253832	0	lncRNA	ENST00000464343	XR_110940	XR_110940	NA	Hs.721910	XLOC_014508	NA	ENST00000464343	THC2661258	NA	"PREDICTED: Homo sapiens hypothetical LOC100506560 (LOC100506560), miscRNA [XR_110940]"	chr1_gl000192_random:438679-438620	NA	Agilent_HUMAN_G3V2	ENST00000464343	ENST00000464343	chr1_gl000192_random	   438620	   438679	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28889_PI429285431	7.700593	P	7.3151913	P	1.3062234376855	0	lncRNA	30605-1_{1..532}	n326312|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000085148|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000085148|1.2760100|-0.2813397	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326312|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000085148|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000085148|1.2760100|-0.2813397	chr1	179426229	179426760	-	NA	NA	NA	NA	AXDND1	NA	chr1:179416229-179436908	inner
CUST_32619_PI429285431	3.691122	P	4.818623	P	0.457707868889075	0	lncRNA	34278-1_{1..443}	n339242|AF086125|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1674|NULL|-1.3233600|-0.2554025	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339242|AF086125|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1674|NULL|-1.3233600|-0.2554025	chr16	 66875335	 66875777	-	NA	NA	NA	NA	CA7	"hg19_refFlat_CA7:range=chr16:66881061-668874015'pad=0,hg19_refFlat_CA7:range=chr16:66881061-668874015'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CA7:range=chr16:66878391-668874015'pad=0,hg19_refFlat_CA7:range=chr16:66878391-668874015'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chr16:66878282-66888050"	NA	inner
CUST_27346_PI429285431	0.9036825	A	0.8883761	A	1.0106660692542	0	lncRNA	28908-1_{1..400}	n324504|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040876|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040876|-1.0227900|-0.4732599	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324504|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040876|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040876|-1.0227900|-0.4732599	chr6	 49899383	 49899782	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47663_PI429285431	0.9147761	A	1.3302716	A	0.749761941357852	0	lncRNA	51645-1_{1..536}	"gi|310124251|ref|XR_110934.1| PREDICTED: Homo sapiens uncharacterized LOC100507199, transcript variant 1 (LOC100507199), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310124251|ref|XR_110934.1| PREDICTED: Homo sapiens uncharacterized LOC100507199, transcript variant 1 (LOC100507199), misc_RNA"	NA	NA	NA	NA	NA	XR_110934.1	NA	NA	NA	NA	NA	Unknown
CUST_14629_PI429285431	0.89302754	A	0.9053456	A	0.991498118594165	0	lncRNA	16300-1_{1..971}	lnc-GPR55-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR55-1:1	chr2	231860563	231861533	-	lnc-GPR55-1	lnc-GPR55-1:1	XLOC_002517	linc-GPR55	SPATA3	NA	chr2:231860839-231870752	inter
CUST_8692_PI429285431	0.8946421	A	0.89166087	A	1.00206856770941	0	lncRNA	10239-1_{1..666}	lnc-SWAP70-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SWAP70-1:2	chr11	  9801923	  9802588	+	lnc-SWAP70-1	lnc-SWAP70-1:2	ENSG00000246273	RP11-540A21.3	SBF2	"hg19_refFlat_SBF2:range=chr11:9801965-103156165'pad=0,hg19_refFlat_SBF2:range=chr11:9801965-103156165'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50chr11:9800214-9812378"	NA	inner
CUST_46993_PI429285431	7.9504166	P	8.424837	P	0.719755892494819	0	lncRNA	51092-1_{1..951}	"gi|380503879|ref|NR_046454.1| Homo sapiens uncharacterized LOC284260 (LOC284260), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|380503879|ref|NR_046454.1| Homo sapiens uncharacterized LOC284260 (LOC284260), transcript variant 2, non-coding RNA"	Chr18	 39766633	 39767583	+	284260	NR_046454.1	NA	NA	NA	NA	NA	inter
CUST_37104_PI429285431	0.87581134	A	0.8735655	A	1.00155790994677	0	lncRNA	38229-1_{1..942}	n345547|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1096|NULL|-1.3427000|-0.4342387	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345547|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1096|NULL|-1.3427000|-0.4342387	chr2	160561650	160562591	-	NA	NA	NA	NA	7-Mar	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50chr2:160569010-160577363"	NA	inter
LNCA_21_P0009089	4.556312	P	5.4431562	P	0.540795780385223	0	lncRNA	TCONS_00024777	NA	NA	NA	NA	XLOC_012052	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012052), lincRNA [TCONS_00024777]"	chr16:87275240-87275181	hs|16q24.2	Agilent_HUMAN_G3V2	TCONS_00024777	TCONS_00024777	chr16	 87275181	 87275240	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_177_PI429285431	4.351341	P	4.4769297	P	0.916629930771029	0	lncRNA	167-1_{1..480}	"transcript_id ""ENST00000435552.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435552.1"" | genecode_v17"	chr1	 20569588	 20570067	+	ENSG00000228105.1	ENST00000435552.1	RP3-340N1.6	RP3-340N1.6-001	NA	NA	NA	inter
CUST_6369_PI429285431	1.5675714	A	1.3257415	A	1.18249157114183	0	lncRNA	6295-1_{1..571}	"transcript_id ""ENST00000596322.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596322.1"" | genecode_v17"	chr19	 17516633	 17517203	+	ENSG00000269640.1	ENST00000596322.1	CTD-2521M24.9	CTD-2521M24.9-008	FAM125A	NA	chr19:17527840-17534003	inter
CUST_4227_PI429285431	1.1871202	A	0.8774033	A	1.23946445600482	0	lncRNA	4186-1_{1..546}	"transcript_id ""ENST00000553029.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553029.1"" | genecode_v17"	chr12	 39481515	 39482060	-	ENSG00000258144.1	ENST00000553029.1	RP11-554L12.1	RP11-554L12.1-001	NA	NA	NA	inter
CUST_46698_PI429285431	7.289484	P	7.571679	P	0.822338910830364	0	lncRNA	50858-1_{1..3000}	"gi|364502996|ref|NR_045666.1| Homo sapiens acyl-CoA synthetase family member 3 (ACSF3), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|364502996|ref|NR_045666.1| Homo sapiens acyl-CoA synthetase family member 3 (ACSF3), transcript variant 5, non-coding RNA"	Chr16	 89160217	 89163216	+	197322	NR_045666.1	NA	NA	NA	NA	NA	inter
CUST_27366_PI429285431	0.88391066	A	0.88035786	A	1.00246564802584	0	lncRNA	28929-1_{1..439}	n324528|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040429|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040429|-1.4281900|-0.2955893	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324528|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040429|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040429|-1.4281900|-0.2955893	chr6	 38238554	 38238992	-	NA	NA	NA	NA	BTBD9	NA	chr6:38228554-38249558	inner
LNCA_21_P0006357	3.841404	P	3.7256966	P	1.0835061933965	0	lncRNA	TCONS_00016648	NA	NA	NA	NA	XLOC_007457	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007457), lincRNA [TCONS_00016648]"	chr9:94904372-94904431	hs|9q22.31	Agilent_HUMAN_G3V2	TCONS_00016648	TCONS_00016648	chr9	 94904372	 94904431	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7721_PI429285431	2.8253694	A	3.0541072	A	0.853381180237697	0	lncRNA	9352-2_{3001..3733}	lnc-C1QTNF8-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1QTNF8-4:1	chr16	  1025026	  1025758	-	lnc-C1QTNF8-4	lnc-C1QTNF8-4:1	ENSG00000249296	ENST00000507971	LMF1	NA	chr16:1012026-1031318	inter
CUST_5215_PI429285431	3.4282575	P	3.2805774	P	1.10778668246621	0	lncRNA	5156-1_{1..1533}	"transcript_id ""ENST00000604760.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604760.1"" | genecode_v17"	chr15	 67833410	 67834942	-	ENSG00000270964.1	ENST00000604760.1	RP11-502I4.3	RP11-502I4.3-001	MAP2K5	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90chr15:67835021-67844942"	NA	inter
CUST_24085_PI429285431	1.4197242	A	0.906004	A	1.42772705576193	0	lncRNA	25635-1_{1..548}	lnc-NDUFA5-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFA5-1:4	chr7	123264597	123265144	-	lnc-NDUFA5-1	lnc-NDUFA5-1:4	ENSG00000230442.1	RP11-390E23.3	ASB15	"hg19_refFlat_ASB15:range=chr7:123254557-1232770355'pad=0,hg19_refFlat_ASB15:range=chr7:123254557-1232770355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80chr7:123254597-123274739"	NA	inner
CUST_38633_PI429285431	1.6579311	A	2.1062038	A	0.732919828088627	0	lncRNA	39636-1_{1..1811}	n383828|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vvl.1||0.0314727|-0.3232074	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383828|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vvl.1||0.0314727|-0.3232074	chr2	235361542	235363352	-	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10"	NA	inter
CUST_47943_PI429285431	2.2837539	A	0.91610765	A	2.58049216454102	0	lncRNA	51835-1_{1..822}	"gi|410172432|ref|XR_171777.1| PREDICTED: Homo sapiens family with sequence similarity 27, member E1 (FAM27E1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172432|ref|XR_171777.1| PREDICTED: Homo sapiens family with sequence similarity 27, member E1 (FAM27E1), misc_RNA"	NA	NA	NA	NA	NA	XR_171777.1	NA	NA	NA	NA	NA	Unknown
CUST_4443_PI429285431	3.9038355	P	4.332962	P	0.742711334229414	0	lncRNA	4393-1_{1..875}	"transcript_id ""ENST00000541694.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000541694.1"" | genecode_v17"	chr12	122233799	122234673	-	ENSG00000212694.4	ENST00000541694.1	AC084018.1	AC084018.1-011	SETD1B	NA	chr12:122242638-122250849	inter
CUST_5039_PI429285431	8.546371	P	9.632831	P	0.470915462698703	0	lncRNA	4980-1_{1..513}	"transcript_id ""ENST00000553318.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553318.1"" | genecode_v17"	chr14	101913979	101914491	+	ENSG00000259166.1	ENST00000553318.1	RP11-1029J19.2	RP11-1029J19.2-001	NA	NA	NA	inter
LNCA_21_P0008497	1.4183387	A	0.9485295	A	1.3849262960586	0	lncRNA	TCONS_00022894	NA	NA	NA	NA	XLOC_011148	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011148), lincRNA [TCONS_00022894]"	chr14:103760469-103760410	hs|14q32.32	Agilent_HUMAN_G3V2	TCONS_00022894	TCONS_00022894	chr14	103760410	103760469	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42012_PI429285431	2.0781739	A	0.9664074	A	2.16110100186275	0	lncRNA	43864-1_{1..113}	ENST00000577998 ncrna:miRNA chromosome:GRCh37:22:23228447:23228559:1 gene:ENSG00000264824 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577998 ncrna:miRNA chromosome:GRCh37:22:23228447:23228559:1 gene:ENSG00000264824 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 23228447	 23228559	+	ENSG00000264824	ENST00000577998	NA	NA	IGLL5	NA	chr22:23223092-23238014	inter
CUST_23759_PI429285431	0.90865123	A	0.90480995	A	1.00266612019569	0	lncRNA	25322-1_{1..534}	lnc-RALBP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RALBP1-1:1	chr18	  9589794	  9590327	+	lnc-RALBP1-1	lnc-RALBP1-1:1	ENSG00000266541.1	RP11-881L2.1	PPP4R1	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-14.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30chr18:9579794-9600180"	NA	inner
CUST_44558_PI429285431	0.91326916	A	1.0273453	A	0.923973807309239	0	lncRNA	49142-1_{1..1842}	"gi|157278030|ref|NR_003922.1| Homo sapiens pro-melanin-concentrating hormone-like 2, pseudogene (PMCHL2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|157278030|ref|NR_003922.1| Homo sapiens pro-melanin-concentrating hormone-like 2, pseudogene (PMCHL2), non-coding RNA"	Chr5	 70671612	 70673453	+	5370	NR_003922.1	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90"	NA	inter
LNCA_21_P0013424	0.90234625	A	0.9212494	A	0.986982801104813	0	lncRNA	ENST00000412996	NA	NA	NA	NA	XLOC_l2_013814	NA	ENST00000412996	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013814), lincRNA [TCONS_l2_00027352]"	chr7:47040309-47040250	hs|7p12.3	Agilent_HUMAN_G3V2	ENST00000412996	ENST00000412996	chr7	 47040250	 47040309	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006249	2.197922	A	1.7396646	A	1.37388133409191	0	lncRNA	TCONS_00016263	NA	NA	NA	NA	XLOC_007635	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007635), lincRNA [TCONS_00016263]"	chr9:5308178-5308119	hs|9p24.1	Agilent_HUMAN_G3V2	TCONS_00016263	TCONS_00016263	chr9	  5308119	  5308178	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41301_PI429285431	7.124529	P	7.573363	P	0.732634731189965	0	lncRNA	42299-1_{1..84}	ENST00000408552 ncrna:miRNA chromosome:GRCh37:12:97885678:97885761:1 gene:ENSG00000221479 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408552 ncrna:miRNA chromosome:GRCh37:12:97885678:97885761:1 gene:ENSG00000221479 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 97885678	 97885761	+	ENSG00000221479	ENST00000408552	NA	NA	NA	NA	NA	inter
CUST_52132_PI429285431	11.184698	P	10.680478	P	1.41835630771778	0	lncRNA	55656-1_{1..2414}	hg19_lincRNAsTranscripts_TCONS_l2_00018320 range=chr22:20383524-20387658 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018320 range=chr22:20383524-20387658 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 20383524	 20385937	-	NA	NA	NA	NA	TMEM191B	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60chr22:20373524-20380440"	NA	inter
CUST_30021_PI429285431	2.2705643	A	2.2002969	A	1.0499112640769	0	lncRNA	31789-1_{1..210}	n334460|U14641|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218268|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218268|-0.2380800|-0.0948960	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334460|U14641|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218268|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218268|-0.2380800|-0.0948960	chr11	  1944096	  1944305	+	NA	NA	NA	NA	TNNT3	NA	chr11:1940799-1959936	inner
CUST_731_PI429285431	2.5540812	A	2.9136283	A	0.779409218356593	0	lncRNA	724-1_{1..2342}	"transcript_id ""ENST00000442956.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442956.1"" | genecode_v17"	chr2	  8347273	  8349614	-	ENSG00000236790.1	ENST00000442956.1	LINC00299	LINC00299-001	NA	NA	NA	inter
CUST_3699_PI429285431	1.0547934	A	0.9059069	A	1.10871341524281	0	lncRNA	3667-1_{1..537}	"transcript_id ""ENST00000450677.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450677.1"" | genecode_v17"	chr10	 61348908	 61349444	+	ENSG00000235140.1	ENST00000450677.1	RP11-135D11.2	RP11-135D11.2-001	NA	NA	NA	inter
CUST_47080_PI429285431	3.990444	P	4.5679708	P	0.670111559917885	0	lncRNA	51164-1_{1..1646}	"gi|333108278|ref|NR_038198.1| Homo sapiens pre-B-cell leukemia homeobox 4 (PBX4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333108278|ref|NR_038198.1| Homo sapiens pre-B-cell leukemia homeobox 4 (PBX4), transcript variant 2, non-coding RNA"	Chr19	 19672516	 19674161	-	80714	NR_038198.1	NA	NA	NA	NA	NA	inter
LNCA_33_P3562810	2.578221	A	2.143033	A	1.35208701426538	0	lncRNA	XR_132545	XR_132545	XR_132545	   286149	Hs.665518	LOC286149	uncharacterized LOC286149	NA	THC2618341	NA	"PREDICTED: Homo sapiens hypothetical LOC286149 (LOC286149), miscRNA [XR_132545]"	chr8:96079120-96079061	hs|8q22.1	Agilent_HUMAN_G3V2	XR_132545	XR_132545	chr8	 96079061	 96079120	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29695_PI429285431	8.95437	P	8.745243	P	1.15598846338423	0	lncRNA	31457-1_{1..656}	n333357|AY294627|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085769|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085769|2.8541300|-0.3142786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333357|AY294627|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085769|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085769|2.8541300|-0.3142786	chr12	102108380	102109035	+	NA	NA	NA	NA	CHPT1	NA	chr12:102098380-102122846	inner
CUST_31193_PI429285431	8.874943	P	8.847506	P	1.01919987092573	0	lncRNA	32987-1_{1..1368}	n337635|AF148950|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|14|NULL|-0.7484310|-0.2856506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337635|AF148950|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|14|NULL|-0.7484310|-0.2856506	chr1	  1001014	  1002381	-	NA	NA	NA	NA	AGRN	NA	chr1:991014-991492	inter
LNCA_21_P0003916	1.4472107	A	3.5505848	P	0.232713353080514	0	lncRNA	TCONS_00009191	NA	NA	NA	NA	XLOC_004206	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004206), lincRNA [TCONS_00009191]"	chr4:185406985-185396627	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00009191	TCONS_00009191	chr4	185396627	185406985	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35464_PI429285431	1.4101043	A	1.4719994	A	0.958004873316052	0	lncRNA	36868-1_{1..919}	n342548|BC047055|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5046|NULL|-0.6893940|-0.2474286	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	>n342548|BC047055|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5046|NULL|-0.6893940|-0.2474286	chr20	 12915524	 12916442	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47021_PI429285431	4.5791054	P	6.1182923	P	0.344079322306499	0	lncRNA	51114-1_{1..1373}	"gi|224586830|ref|NR_027271.1| Homo sapiens CIRBP antisense RNA 1 (CIRBP-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224586830|ref|NR_027271.1| Homo sapiens CIRBP antisense RNA 1 (CIRBP-AS1), non-coding RNA"	Chr19	  1267470	  1268842	-	148046	NR_027271.1	NA	NA	NA	NA	NA	inter
CUST_28815_PI429285431	7.9844055	P	7.7479362	P	1.17810595803675	0	lncRNA	30523-1_{1..962}	n326227|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090916|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090916|-0.2464210|-0.3312245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326227|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000090916|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000090916|-0.2464210|-0.3312245	chr1	219069219	219070180	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001344	2.6599445	A	2.5920756	A	1.04816722256137	0	lncRNA	TCONS_00001038	NA	NA	NA	NA	XLOC_000303	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000303), lincRNA [TCONS_00001038]"	chr1:95155378-95155437	hs|1p21.3	Agilent_HUMAN_G3V2	TCONS_00001038	TCONS_00001038	chr1	 95155378	 95155437	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007883	0.87515754	A	0.87487274	A	1.00019742780333	0	lncRNA	TCONS_00021357	NA	NA	NA	NA	XLOC_010123	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010123), lincRNA [TCONS_00021357]"	chr12:70119047-70099771	hs|12q15	Agilent_HUMAN_G3V2	TCONS_00021357	TCONS_00021357	chr12	 70099771	 70119047	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29937_PI429285431	1.3059225	A	2.634919	A	0.398045015051448	0	lncRNA	31701-1_{1..579}	n334125|M61872|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195999|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195999|1.8034700|-0.2225565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334125|M61872|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195999|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195999|1.8034700|-0.2225565	chr7	 64838818	 64839396	+	NA	NA	NA	NA	ZNF92	NA	chr7:64838768-64865998	inner
CUST_43310_PI429285431	2.801639	A	3.3600392	P	0.679054748055037	0	lncRNA	48141-1_{1..1459}	ENST00000599388 havana:lincRNA chromosome:GRCh37:19:35136285:35137743:1 gene:ENSG00000269811 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000599388 havana:lincRNA chromosome:GRCh37:19:35136285:35137743:1 gene:ENSG00000269811 gene_biotype:lincRNA transcript_biotype:lincRNA	chr19	 35136285	 35137743	+	ENSG00000269811	ENST00000599388	NA	NA	LOC100130342	NA	chr19:35136289-35137743	inter
CUST_37612_PI429285431	0.89969	A	0.91074437	A	0.992366975230208	0	lncRNA	38710-2_{3001..3080}	n346090|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1640|NULL|-1.3048300|-0.3192358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346090|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1640|NULL|-1.3048300|-0.3192358	chr14	 54042945	 54043024	-	NA	NA	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70"	NA	inter
CUST_15418_PI429285431	6.5489817	P	6.669997	P	0.919540294235483	0	lncRNA	17104-1_{1..458}	lnc-EGLN1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EGLN1-1:3	chr1	231664166	231664623	-	lnc-EGLN1-1	lnc-EGLN1-1:3	XLOC_001257	linc-EGLN1-2	TSNAX	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90chr1:231664399-231674302"	NA	inter
LNCA_21_P0003738	0.90907425	A	0.92760026	A	0.987240845487282	0	lncRNA	TCONS_00008464	NA	NA	NA	NA	XLOC_003925	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003925), lincRNA [TCONS_00008464]"	chr4:38195020-38194961	hs|4p14	Agilent_HUMAN_G3V2	TCONS_00008464	TCONS_00008464	chr4	 38194961	 38195020	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44445_PI429285431	0.9028838	A	0.91216826	A	0.993585166190234	0	lncRNA	49054-1_{1..1492}	"gi|224177497|ref|NR_026992.1| Homo sapiens uncharacterized LOC340017 (LOC340017), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224177497|ref|NR_026992.1| Homo sapiens uncharacterized LOC340017 (LOC340017), non-coding RNA"	Chr4	158493642	158495133	+	340017	NR_026992.1	NA	NA	NA	NA	NA	inter
CUST_19929_PI429285431	9.212866	P	9.139628	P	1.05207532473339	0	lncRNA	21584-1_{1..575}	lnc-TMEM43-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM43-1:2	chr3	 14189451	 14190025	+	lnc-TMEM43-1	lnc-TMEM43-1:2	ENSG00000228242.1	AC093495.4	XPC	"hg19_refFlat_XPC:range=chr3:14187441-142200685'pad=0,hg19_refFlat_XPC:range=chr3:14187441-142200685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr3:14186647-14199784"	NA	inner
CUST_31290_PI429285431	4.4863386	P	4.54086	P	0.962913827387302	0	lncRNA	33078-1_{1..1213}	n337751|BC029603|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|133|NULL|-1.2021900|-0.2193545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337751|BC029603|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|133|NULL|-1.2021900|-0.2193545	chr15	 49102908	 49104120	+	NA	NA	NA	NA	CEP152	NA	chr15:49092908-49103343	inner
LNCA_21_P0006755	0.91376853	A	0.95023704	A	0.975038769791902	0	lncRNA	ENST00000456722	NA	NA	NA	NA	XLOC_008796	NA	ENST00000456722	THC2627951	NA	"BROAD Institute lincRNA (XLOC_008796), lincRNA [TCONS_00017965]"	chr10:45087178-45087119	hs|10q11.21	Agilent_HUMAN_G3V2	ENST00000456722	ENST00000456722	chr10	 45087119	 45087178	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4192_PI429285431	0.89759034	A	0.91081035	A	0.990878443461433	0	lncRNA	4151-1_{1..676}	"transcript_id ""ENST00000540811.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000540811.1"" | genecode_v17"	chr12	 24366190	 24366865	-	ENSG00000255864.1	ENST00000540811.1	RP11-444D3.1	RP11-444D3.1-001	SOX5	NA	chr12:24356190-24715380	inner
LNCA_21_P0013199	0.91362685	A	0.9510107	A	0.974420337694677	0	lncRNA	TCONS_l2_00025884	NA	NA	NA	NA	XLOC_l2_013412	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013412), lincRNA [TCONS_l2_00025884]"	chr7:56237083-56246648	hs|7p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00025884	TCONS_l2_00025884	chr7	 56237083	 56246648	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31977_PI429285431	5.5823317	P	5.980524	P	0.758808476492573	0	lncRNA	33700-1_{1..1868}	n338537|AK094143|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|939|NULL|7.3447200|-0.0493169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338537|AK094143|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|939|NULL|7.3447200|-0.0493169	chr14	105419892	105421759	-	NA	NA	NA	NA	AHNAK2	NA	chr14:105409892-105444694	inner
CUST_4803_PI429285431	0.90164244	A	0.89508706	A	1.00455418207338	0	lncRNA	4747-1_{1..443}	"transcript_id ""ENST00000557749.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557749.1"" | genecode_v17"	chr14	 48236268	 48236710	-	ENSG00000259129.1	ENST00000557749.1	LINC00648	LINC00648-002	NA	NA	NA	inter
LNCA_21_P0008969	0.91188705	A	1.346869	A	0.739703009217673	0	lncRNA	TCONS_00024465	NA	NA	NA	NA	XLOC_011787	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011787), lincRNA [TCONS_00024465]"	chr16:73849881-73849940	hs|16q22.3	Agilent_HUMAN_G3V2	TCONS_00024465	TCONS_00024465	chr16	 73849881	 73849940	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008379	0.9111166	A	0.9347194	A	0.983772887187558	0	lncRNA	TCONS_00022615	NA	NA	NA	NA	XLOC_010917	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010917), lincRNA [TCONS_00022615]"	chr14:96048444-96048503	hs|14q32.13	Agilent_HUMAN_G3V2	TCONS_00022615	TCONS_00022615	chr14	 96048444	 96048503	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25423_PI429285431	1.6907177	A	1.3742574	A	1.2452714829057	0	lncRNA	26953-1_{1..1078}	lnc-GABPA-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GABPA-3:3	chr21	 27843070	 27844147	+	lnc-GABPA-3	lnc-GABPA-3:3	ENSG00000232692.1	AP001596.6	CYYR1	NA	chr21:27838528-27854017	inner
LNCA_21_P0007748	0.90547955	A	0.9253367	A	0.986330362219304	0	lncRNA	TCONS_00020893	NA	NA	NA	NA	XLOC_010170	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010170), lincRNA [TCONS_00020893]"	chr12:101822453-101822394	hs|12q23.2	Agilent_HUMAN_G3V2	TCONS_00020893	TCONS_00020893	chr12	101822394	101822453	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46550_PI429285431	12.740133	P	12.487223	P	1.19160823586531	0	lncRNA	50734-1_{1..1777}	"gi|254028154|ref|NR_028052.1| Homo sapiens neugrin, neurite outgrowth associated (NGRN), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254028154|ref|NR_028052.1| Homo sapiens neugrin, neurite outgrowth associated (NGRN), transcript variant 1, non-coding RNA"	Chr15	 90808895	 90810671	+	51335	NR_028052.1	NA	NA	NA	NA	NA	inter
CUST_41326_PI429285431	0.9128052	A	0.92119896	A	0.994198781353404	0	lncRNA	42375-1_{1..70}	ENST00000362283 ncrna:miRNA chromosome:GRCh37:8:135817119:135817188:-1 gene:ENSG00000199153 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362283 ncrna:miRNA chromosome:GRCh37:8:135817119:135817188:-1 gene:ENSG00000199153 gene_biotype:miRNA transcript_biotype:miRNA	chr8	135817119	135817188	-	ENSG00000199153	ENST00000362283	NA	NA	NA	NA	NA	inter
LNCA_21_P0003423	0.8937516	A	0.909593	A	0.989079643038166	0	lncRNA	ENST00000512609	NA	NA	NA	NA	XLOC_003757	NA	ENST00000512609	NA	NA	"BROAD Institute lincRNA (XLOC_003757), lincRNA [TCONS_00007667]"	chr4:157613729-157613788	hs|4q32.1	Agilent_HUMAN_G3V2	ENST00000512609	ENST00000512609	chr4	157613729	157613788	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20311_PI429285431	0.90049136	A	0.91387516	A	0.990765954845873	0	lncRNA	21954-1_{1..757}	lnc-AP002478.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP002478.1-4:1	chr18	  4013619	  4014375	+	lnc-AP002478.1-4	lnc-AP002478.1-4:1	ENSG00000263878.1	RP11-502P1.2	DLGAP1	NA	chr18:4003619-4023943	inner
LNCA_21_P0007680	0.8860626	A	0.898573	A	0.991365940946832	0	lncRNA	TCONS_00020678	NA	NA	NA	NA	XLOC_009983	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009983), lincRNA [TCONS_00020678]"	chr12:4017303-4017244	hs|12p13.32	Agilent_HUMAN_G3V2	TCONS_00020678	TCONS_00020678	chr12	  4017244	  4017303	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6912_PI429285431	7.3515396	P	7.223332	P	1.09293499824118	0	lncRNA	6862-1_{1..751}	"transcript_id ""ENST00000591299.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000591299.1"" | genecode_v17"	chr22	 17082940	 17083690	+	ENSG00000100181.16	ENST00000591299.1	TPTEP1	TPTEP1-005	CCT8L2	NA	chr22:17072940-17073700	inter
CUST_38549_PI429285431	1.5552816	A	1.7223592	A	0.890644993108353	0	lncRNA	39556-1_{1..2342}	n383318|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002lak.1||-1.1495500|-0.4089528	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n383318|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002lak.1||-1.1495500|-0.4089528	chr18	 36786887	 36789228	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37110_PI429285431	6.636819	P	7.049327	P	0.751316139936996	0	lncRNA	38235-1_{1..1336}	n345553|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1102|NULL|-1.3089800|-0.3681410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345553|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1102|NULL|-1.3089800|-0.3681410	chr2	175916586	175917921	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002193	1.6726481	A	1.907701	A	0.849653843897162	0	lncRNA	TCONS_00003622	NA	NA	NA	NA	XLOC_001412	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001412), lincRNA [TCONS_00003622]"	chr2:30582461-30582520	hs|2p23.1	Agilent_HUMAN_G3V2	TCONS_00003622	TCONS_00003622	chr2	 30582461	 30582520	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32310_PI429285431	7.938692	P	8.382776	P	0.735050869079809	0	lncRNA	33993-1_{1..1415}	n338887|BC018611|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1313|NULL|1.9763600|-0.1197104	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338887|BC018611|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1313|NULL|1.9763600|-0.1197104	chr2	 74740717	 74742131	+	NA	NA	NA	NA	TLX2	NA	chr2:74741596-74744275	inner
CUST_4278_PI429285431	5.274032	P	5.513362	P	0.847138639502077	0	lncRNA	4234-1_{1..537}	"transcript_id ""ENST00000552201.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000552201.1"" | genecode_v17"	chr12	 59105966	 59106502	-	ENSG00000257259.1	ENST00000552201.1	RP11-767I20.1	RP11-767I20.1-002	NA	NA	NA	inter
CUST_22216_PI429285431	1.3772005	A	1.7474574	A	0.773644721967728	0	lncRNA	23816-1_{1..683}	lnc-MDM4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MDM4-1:1	chr1	204585211	204585893	+	lnc-MDM4-1	lnc-MDM4-1:1	ENSG00000240710.1	RP11-430C7.4	LRRN2	NA	chr1:204586301-204595693	inter
CUST_31462_PI429285431	3.861982	P	4.23483	P	0.77225649249215	0	lncRNA	33229-1_{1..467}	n337937|L42354|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|322|NULL|-0.7131210|-0.1458992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337937|L42354|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|322|NULL|-0.7131210|-0.1458992	chr22	 19049710	 19050176	-	NA	NA	NA	NA	DGCR2	NA	chr22:19039710-19060180	inter
CUST_36735_PI429285431	0.8806107	A	2.409103	A	0.346639436120442	0	lncRNA	37911-1_{1..1774}	n345218|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_767|NULL|-1.3297000|-0.2241436	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345218|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_767|NULL|-1.3297000|-0.2241436	chr13	 40914673	 40916446	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43677_PI429285431	7.428589	P	7.4984627	P	0.95272139990122	0	lncRNA	48430-1_{1..2717}	"gi|223890249|ref|NR_026900.1| Homo sapiens uncharacterized protein FLJ23867 (FLJ23867), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223890249|ref|NR_026900.1| Homo sapiens uncharacterized protein FLJ23867 (FLJ23867), non-coding RNA"	Chr1	180167144	180169860	+	200058	NR_026900.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0007696	1.6169448	A	0.87273633	A	1.67505500363569	0	lncRNA	TCONS_00020751	NA	NA	NA	NA	XLOC_010039	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010039), lincRNA [TCONS_00020751]"	chr12:29565543-29565484	hs|12p11.22	Agilent_HUMAN_G3V2	TCONS_00020751	TCONS_00020751	chr12	 29565484	 29565543	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20133_PI429285431	2.1907072	A	0.8732316	A	2.49229630811959	0	lncRNA	21780-1_{1..216}	lnc-CHPF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHPF2-1:1	chr7	150951399	150951614	+	lnc-CHPF2-1	lnc-CHPF2-1:1	ENSG00000243018.1	RP5-1070G24.2	SMARCD3	NA	chr7:150941399-150961476	inner
LNCA_21_P0014673	2.8737721	A	1.35283	A	2.86978389322886	0	lncRNA	XR_111219	XR_111219	XR_111219	NA	NA	LOC100506982	uncharacterized LOC100506982	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506982 (LOC100506982), miscRNA [XR_111219]"	chr11:117016771-117016830	hs|11q23.3	Agilent_HUMAN_G3V2	XR_111219	XR_111219	chr11	117016771	117016830	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2990_PI429285431	1.881735	A	0.9025969	A	1.97128736362118	0	lncRNA	2969-1_{1..643}	"transcript_id ""ENST00000522661.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522661.1"" | genecode_v17"	chr8	  8418904	  8419546	+	ENSG00000253130.1	ENST00000522661.1	CTD-3023L14.2	CTD-3023L14.2-002	NA	NA	NA	inter
CUST_39506_PI429285431	0.9038401	A	0.95025885	A	0.968337083382453	0	lncRNA	40452-1_{1..2421}	n387266|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ari.1||-0.5017970|-0.2097181	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387266|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ari.1||-0.5017970|-0.2097181	chr22	 50171537	 50173957	-	NA	NA	NA	NA	BRD1	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10chr22:50166937-50183958"	NA	inner
CUST_43701_PI429285431	0.89055437	A	1.6099823	A	0.607338221496452	0	lncRNA	48450-1_{1..2396}	"gi|371122804|ref|NR_045785.1| Homo sapiens chitinase 1 (chitotriosidase) (CHIT1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371122804|ref|NR_045785.1| Homo sapiens chitinase 1 (chitotriosidase) (CHIT1), transcript variant 4, non-coding RNA"	Chr1	203185207	203187602	-	1118	NR_045785.1	NA	NA	NA	NA	NA	inter
CUST_7279_PI429285431	4.0859413	P	5.4518175	P	0.387998720508063	0	lncRNA	8154-1_{1..342}	"transcript_id ""ENST00000410504.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410504.1"" | genecode_v17"	chr10	110700727	110701068	-	ENSG00000222436.1	ENST00000410504.1	RN7SKP278	RN7SKP278-201	NA	NA	NA	inter
LNCA_21_P0006045	0.87632746	A	0.87423337	A	1.0014525665336	0	lncRNA	ENST00000450938	NA	BC034724	NA	Hs.382317	XLOC_007535	NA	ENST00000450938	THC2610664	NA	"BROAD Institute lincRNA (XLOC_007535), lincRNA [TCONS_00015741]"	chr9:120419191-120419250	hs|9q33.1	Agilent_HUMAN_G3V2	ENST00000450938	ENST00000450938	chr9	120419191	120419250	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011222	2.0049257	A	0.8748584	A	2.18868949989034	0	lncRNA	BC022569	NA	BC022569	NA	Hs.585620	XLOC_l2_003911	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003911), lincRNA [TCONS_l2_00007500]"	chr13:25749471-25749412	hs|13q12.13	Agilent_HUMAN_G3V2	BC022569	BC022569	chr13	 25749412	 25749471	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39033_PI429285431	4.638191	P	5.154798	P	0.699013876155045	0	lncRNA	40012-2_{3001..3520}	n385408|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xvf.2||-1.1932800|-0.2976092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n385408|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xvf.2||-1.1932800|-0.2976092	chr8	 65294705	 65295224	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33009_PI429285431	6.6689825	P	6.8598986	P	0.876049260272926	0	lncRNA	34624-1_{1..1048}	n339691|BC071794|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2136|NULL|-0.6182700|-0.1953455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339691|BC071794|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2136|NULL|-0.6182700|-0.1953455	chr20	 43000767	 43001814	-	NA	NA	NA	NA	HNF4A	"hg19_refFlat_HNF4A:range=chr20:43030125-430583055'pad=0,hg19_refFlat_HNF4A:range=chr20:43030125-430583055'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20chr20:42990767-43041509"	NA	inner
CUST_18409_PI429285431	1.7612274	A	1.4362009	A	1.25268744827728	0	lncRNA	20134-1_{1..2259}	lnc-C6orf183-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C6orf183-1:3	chr6	109591936	109594194	+	lnc-C6orf183-1	lnc-C6orf183-1:3	ENSG00000243587	C6orf183	FLJ37396	NA	chr6:109581936-109602217	inter
CUST_39868_PI429285431	7.3265533	P	7.417497	P	0.938908386736306	0	lncRNA	40765-2_{3001..6000}	n406538|NR_024052|lncRNA|Homosapiens||RefGeneNoncode|NR_024052||0.1745660|-0.2402520	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406538|NR_024052|lncRNA|Homosapiens||RefGeneNoncode|NR_024052||0.1745660|-0.2402520	chr6	  1551085	  1554084	-	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40"	NA	inter
CUST_7844_PI429285431	0.8988326	A	0.90394354	A	0.996463634071982	0	lncRNA	9468-1_{1..539}	lnc-CAMK1G-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CAMK1G-1:9	chr1	209605549	209606087	+	lnc-CAMK1G-1	lnc-CAMK1G-1:9	ENSG00000230937	CTA-55I10.1	LOC642587	NA	chr1:209602168-209605894	inter
LNCA_21_P0013663	8.265984	P	8.863839	P	0.660735607610434	0	lncRNA	TCONS_l2_00029403	NA	NA	NA	NA	XLOC_l2_015239	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015239), lincRNA [TCONS_l2_00029403]"	chr9:75477484-75477425	hs|9q21.13	Agilent_HUMAN_G3V2	TCONS_l2_00029403	TCONS_l2_00029403	chr9	 75477425	 75477484	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25650_PI429285431	0.9104393	A	0.92057467	A	0.992999316615185	0	lncRNA	27180-1_{1..516}	lnc-ZDHHC13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZDHHC13-1:1	chr11	 19302797	 19303312	+	lnc-ZDHHC13-1	lnc-ZDHHC13-1:1	ENSG00000255308.1	RP11-428C19.4	NA	NA	NA	inter
CUST_30939_PI429285431	3.9680898	P	3.8277957	P	1.10212976718492	0	lncRNA	32727-1_{1..358}	n337012|DQ088986|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341104|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341104|1.4580400|-0.4924948	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337012|DQ088986|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341104|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341104|1.4580400|-0.4924948	chr15	 93486170	 93486527	+	NA	NA	NA	NA	CHD2	NA	chr15:93476170-93499398	inner
CUST_38642_PI429285431	1.3775885	A	0.90462637	A	1.38795628540148	0	lncRNA	39645-1_{1..606}	n383867|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wrj.1||3.0337600|-0.1122793	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383867|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wrj.1||3.0337600|-0.1122793	chr20	 18790382	 18790987	-	NA	NA	NA	NA	LOC100128496	NA	chr20:18790372-18810839	inner
CUST_38798_PI429285431	1.4544458	A	1.0401484	A	1.3326495117765	0	lncRNA	39792-1_{1..473}	n384502|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003idi.3||-1.0586000|-0.3074550	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384502|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003idi.3||-1.0586000|-0.3074550	chr4	120433505	120433977	+	NA	NA	NA	NA	PDE5A	NA	chr4:120423505-120483178	inner
CUST_361_PI429201921	1.3198874	A	1.5059333	A	0.879011594312565	0	lncRNA	232-2_{3001..6000}	TC04002705.hg.1	 TCONS_l2_00021957-XLOC_l2_011244 // Broad TUCP // linc-IL21 chr4:-:123651343-123653613 // chr4 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00021277-XLOC_l2_011244 // Broad TUCP // linc-IL21 chr4:-:123644828-123653566 // chr4 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00021278-XLOC_l2_011244 // Broad TUCP // linc-IL21 chr4:-:123644828-123653630 // chr4 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00021279-XLOC_l2_011244 // Broad TUCP // linc-IL21 chr4:-:123652770-123653534 // chr4 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr4:-:123644828-123653566	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00021277-XLOC_l2_011244	linc-IL21	chr4	123644828	123653566	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30930_PI429285431	10.886749	P	10.455394	P	1.34849951248064	0	lncRNA	32718-1_{1..341}	n336988|BC111090|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000339889|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000339889|-0.7920010|-0.1384572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336988|BC111090|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000339889|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000339889|-0.7920010|-0.1384572	chr15	 42111269	 42111609	+	NA	NA	NA	NA	MAPKBP1	NA	chr15:42101269-42120053	inter
CUST_41836_PI429285431	2.900752	A	3.5538259	A	0.635923928239409	0	lncRNA	43454-1_{1..87}	ENST00000385212 ncrna:miRNA chromosome:GRCh37:17:46114527:46114613:-1 gene:ENSG00000207947 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385212 ncrna:miRNA chromosome:GRCh37:17:46114527:46114613:-1 gene:ENSG00000207947 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 46114527	 46114613	-	ENSG00000207947	ENST00000385212	NA	NA	COPZ2	NA	chr17:46104527-46115152	inner
LNCA_21_P0009384	1.4014136	A	1.5370978	A	0.910238049633816	0	lncRNA	TCONS_00025886	NA	NA	NA	NA	XLOC_012161	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012161), lincRNA [TCONS_00025886]"	chr17:27895528-27895587	hs|17q11.2	Agilent_HUMAN_G3V2	TCONS_00025886	TCONS_00025886	chr17	 27895528	 27895587	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43065_PI429285431	0.9041467	A	0.90240514	A	1.00120788631155	0	lncRNA	46957-1_{1..129}	ENST00000516428 ncrna:snRNA chromosome:GRCh37:12:28472268:28472396:-1 gene:ENSG00000252237 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516428 ncrna:snRNA chromosome:GRCh37:12:28472268:28472396:-1 gene:ENSG00000252237 gene_biotype:snRNA transcript_biotype:snRNA	chr12	 28472268	 28472396	-	ENSG00000252237	ENST00000516428	NA	NA	CCDC91	NA	chr12:28462268-28482396	inner
CUST_37495_PI429285431	3.314127	P	2.9019723	A	1.33067172118489	0	lncRNA	38597-1_{1..442}	n345960|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1509|NULL|-1.3555100|-0.0365523	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345960|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1509|NULL|-1.3555100|-0.0365523	chr16	 15016582	 15017023	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010781	0.8934561	A	1.8556894	A	0.513261765953413	0	lncRNA	ENST00000452465	NA	NA	NA	NA	XLOC_l2_001138	NA	ENST00000452465	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001138), lincRNA [TCONS_l2_00002669]"	chr1:156422879-156422820	hs|1q22	Agilent_HUMAN_G3V2	ENST00000452465	ENST00000452465	chr1	156422820	156422879	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11946_PI429285431	0.8883368	A	1.423617	A	0.690024647206571	0	lncRNA	13526-1_{1..373}	lnc-ADAMTS18-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAMTS18-2:1	chr16	 77042061	 77042433	-	lnc-ADAMTS18-2	lnc-ADAMTS18-2:1	XLOC_012014	linc-KARS-3	NA	NA	NA	inter
CUST_47847_PI429285431	0.90552473	A	1.5181048	A	0.65402601607319	0	lncRNA	51752-2_{3001..3480}	"gi|197100147|ref|NR_024086.1| Homo sapiens COPG2 imprinted transcript 1 (non-protein coding) (COPG2IT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|197100147|ref|NR_024086.1| Homo sapiens COPG2 imprinted transcript 1 (non-protein coding) (COPG2IT1), non-coding RNA"	NA	NA	NA	NA	NA	NR_024086.1	NA	NA	NA	NA	NA	Unknown
CUST_16596_PI429285431	1.7242829	A	2.110003	A	0.76539686660442	0	lncRNA	18297-1_{1..876}	lnc-EDNRB-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EDNRB-2:4	chr13	 78564473	 78565348	-	lnc-EDNRB-2	lnc-EDNRB-2:4	XLOC_010662	linc-EDNRB-1	NA	NA	NA	inter
LNCA_21_P0011667	3.2294831	P	3.950227	P	0.606784483907923	0	lncRNA	THC2605119	NA	NA	NA	NA	XLOC_l2_006574	NA	NA	THC2605119	NA	"BROAD Institute lincRNA (XLOC_l2_006574), lincRNA [TCONS_l2_00012261]"	chr19:007441527-007441585	hs|19p13.2	Agilent_HUMAN_G3V2	THC2605119	THC2605119	chr19	  7441527	  7441585	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43018_PI429285431	0.88970876	A	0.89830923	A	0.994056342305559	0	lncRNA	46296-1_{1..136}	ENST00000410712 ncrna:snRNA chromosome:GRCh37:4:76750607:76750742:-1 gene:ENSG00000222644 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410712 ncrna:snRNA chromosome:GRCh37:4:76750607:76750742:-1 gene:ENSG00000222644 gene_biotype:snRNA transcript_biotype:snRNA	chr4	 76750607	 76750742	-	ENSG00000222644	ENST00000410712	NA	NA	NA	NA	NA	inter
CUST_49800_PI429285431	1.4374242	A	0.94946957	A	1.40245514541665	0	lncRNA	53557-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00025921 range=chr7:63360341-63378351 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025921 range=chr7:63360341-63378351 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 63360341	 63363340	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90"	NA	inter
CUST_32421_PI429285431	2.4430087	A	1.5876774	A	1.80917416556492	0	lncRNA	34097-1_{1..366}	n339016|U61091|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1445|NULL|-1.1578700|-0.2930532	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339016|U61091|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1445|NULL|-1.1578700|-0.2930532	chr2	173288541	173288906	-	NA	NA	NA	NA	ITGA6	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10chr2:173292314-173298901"	NA	inter
LNCA_21_P0010319	1.1079628	A	0.88817286	A	1.16456401069585	0	lncRNA	TCONS_00029272	NA	NA	NA	NA	XLOC_014042	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014042), lincRNA [TCONS_00029272]"	chr21:27805057-27804998	hs|21q21.3	Agilent_HUMAN_G3V2	TCONS_00029272	TCONS_00029272	chr21	 27804998	 27805057	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002058	0.8797028	A	0.8873892	A	0.994686361100443	0	lncRNA	ENST00000430134	NA	NA	NA	NA	XLOC_002132	NA	ENST00000430134	THC2685679	NA	"BROAD Institute lincRNA (XLOC_002132), lincRNA [TCONS_00003307]"	chr2:65257943-65257884	hs|2p14	Agilent_HUMAN_G3V2	ENST00000430134	ENST00000430134	chr2	 65257884	 65257943	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00321839	2.7473192	A	3.1436834	P	0.759770604304573	0	lncRNA	ENST00000417957	NA	NA	NA	NA	XLOC_014200	NA	ENST00000417957	NA	NA	"BROAD Institute lincRNA (XLOC_014200), lincRNA [TCONS_00029403]"	chr22:28117423-28117482	hs|22q12.1	Agilent_HUMAN_G3V2	ENST00000417957	ENST00000417957	chr22	 28117423	 28117482	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003793	7.643747	P	7.564255	P	1.05664591019236	0	lncRNA	TCONS_00008642	NA	NA	NA	NA	XLOC_004153	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004153), lincRNA [TCONS_00008642]"	chr4:170782617-170770488	hs|4q33	Agilent_HUMAN_G3V2	TCONS_00008642	TCONS_00008642	chr4	170770488	170782617	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007816	6.905935	P	6.7873144	P	1.0856963023191	0	lncRNA	TCONS_00021026	NA	NA	NA	NA	XLOC_009628	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009628), lincRNA [TCONS_00021026]"	chr12:5621087-5621146	hs|12p13.31	Agilent_HUMAN_G3V2	TCONS_00021026	TCONS_00021026	chr12	  5621087	  5621146	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39252_PI429285431	3.8909216	P	4.058455	P	0.890363650305505	0	lncRNA	40223-1_{1..1554}	n386124|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bmb.2||1.3129100|-0.1523251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386124|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010bmb.2||1.3129100|-0.1523251	chr15	 82944794	 82946347	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30816_PI429285431	2.428178	A	2.3863637	A	1.02940757220734	0	lncRNA	32603-1_{1..312}	n336743|Z75938|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328105|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328105|-1.3404800|-0.2441034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336743|Z75938|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328105|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328105|-1.3404800|-0.2441034	chr14	 22466180	 22466491	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013090	1.8952392	A	1.4060841	A	1.40362261736396	0	lncRNA	ENST00000446525	NA	NA	NA	NA	XLOC_l2_013099	NA	ENST00000446525	THC2737654	NA	"BROAD Institute lincRNA (XLOC_l2_013099), lincRNA [TCONS_l2_00024891]"	chr6:115954806-115954747	hs|6q22.1	Agilent_HUMAN_G3V2	ENST00000446525	ENST00000446525	chr6	115954747	115954806	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014193	6.6515875	P	7.001464	P	0.784651264055083	0	lncRNA	XR_108787	XR_108787	XR_108787	NA	NA	LOC100507614	NA	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507614, transcript variant 1 (LOC100507614), miscRNA [XR_108787]"	chr7:150725592-150725533	hs|7q36.1	Agilent_HUMAN_G3V2	XR_108787	XR_108787	chr7	150725533	150725592	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010930	1.7370863	A	0.9147057	A	1.76832150470716	0	lncRNA	ENST00000438372	NA	NA	NA	NA	XLOC_l2_001816	NA	ENST00000438372	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001816), lincRNA [TCONS_l2_00004071]"	chr10:2055481-2054744	hs|10p15.3	Agilent_HUMAN_G3V2	ENST00000438372	ENST00000438372	chr10	  2054744	  2055481	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005004	0.87580645	A	2.2510326	A	0.385492273683633	0	lncRNA	TCONS_00012089	NA	NA	NA	NA	XLOC_005620	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005620), lincRNA [TCONS_00012089]"	chr6:15674727-15674668	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00012089	TCONS_00012089	chr6	 15674668	 15674727	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23875_PI429285431	10.7109585	P	10.456422	P	1.19295241720006	0	lncRNA	25434-2_{3001..3387}	lnc-HMBS-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMBS-1:3	chr11	118955169	118955555	+	lnc-HMBS-1	lnc-HMBS-1:3	ENSG00000160695.8	VPS11	HMBS	NA	chr11:118955587-118962677	inner
CUST_36876_PI429285431	6.2167087	P	6.3965178	P	0.882819804865127	0	lncRNA	38035-1_{1..3000}	n345345|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_894|NULL|-1.3960400|-0.2266932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345345|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_894|NULL|-1.3960400|-0.2266932	chr17	 37700443	 37703442	+	NA	NA	NA	NA	CDK12	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40chr17:37690443-37690800"	NA	inter
CUST_161_PI429201921	1.7895515	A	1.980894	A	0.875790375202291	0	lncRNA	139-1_{...	TC6_qbl_hap6000199.hg.1	TCONS_00029994-XLOC_014466 // Rinn lincRNAs // linc-GRIP2-3 chr6_qbl_hap6:+:800486-804634 // chr6_qbl_hap6 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6_qbl_hap6:+:800486-804634	NA	Affy_HUMAN_HTA2.0	TCONS_00029994-XLOC_014466	linc-GRIP2-3	chr6_qbl_hap6	   800486	   804634	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002484	4.4807434	P	4.714875	P	0.850196603149553	0	lncRNA	TCONS_00004368	NA	NA	NA	NA	XLOC_002247	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002247), lincRNA [TCONS_00004368]"	chr2:106544747-106544688	hs|2q12.2	Agilent_HUMAN_G3V2	TCONS_00004368	TCONS_00004368	chr2	106544688	106544747	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12019_PI429285431	0.88225245	A	0.8780496	A	1.00291744109994	0	lncRNA	13601-1_{1..1832}	lnc-TPRA1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPRA1-1:3	chr3	127255327	127257158	-	lnc-TPRA1-1	lnc-TPRA1-1:3	XLOC_003240	linc-TXNRD3-3	NA	NA	NA	inter
CUST_25939_PI429285431	5.095721	P	5.143903	P	0.967154312705834	0	lncRNA	27458-1_{1..455}	lnc-PANK4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PANK4-2:1	chr1	  2424540	  2424994	-	lnc-PANK4-2	lnc-PANK4-2:1	ENSG00000224387.1	RP3-395M20.2	PLCH2	NA	chr1:2414540-2434697	inner
CUST_38309_PI429285431	7.3403163	P	7.5872536	P	0.842683452006743	0	lncRNA	39359-2_{3001..4914}	n381990|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001upb.1||1.1911400|-0.1458754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381990|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001upb.1||1.1911400|-0.1458754	chr13	 24484604	 24486517	-	NA	NA	NA	NA	NA	"hg19_refFlat_ANKRD26:range=chr10:27294519-273892555'pad=0,hg19_refFlat_ANKRD26:range=chr10:27294519-273892555'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-57.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30"	NA	inter
CUST_6090_PI429285431	1.4330087	A	2.8056371	A	0.386187025277156	0	lncRNA	6016-1_{1..733}	"transcript_id ""ENST00000586226.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586226.1"" | genecode_v17"	chr18	 12288307	 12289039	+	ENSG00000267069.1	ENST00000586226.1	RP11-64C12.8	RP11-64C12.8-001	NA	NA	NA	inter
LNCA_33_P3385882	0.87305886	A	0.8744028	A	0.999068885534504	0	lncRNA	XR_110362	XR_110362	XR_110362	100130083	Hs.539356	HBCBP	HBcAg-binding protein	NA	NP832972	NA	"PREDICTED: Homo sapiens HBcAg-binding protein (HBCBP), miscRNA [XR_110362]"	chr12:57391276-57391335	hs|12q13.3	Agilent_HUMAN_G3V2	XR_110362	XR_110362	chr12	 57391276	 57391335	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20930_PI429285431	0.88764787	A	0.8913617	A	0.997429079697245	0	lncRNA	22561-1_{1..601}	lnc-GABPA-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GABPA-3:4	chr21	 27843070	 27843670	+	lnc-GABPA-3	lnc-GABPA-3:4	ENSG00000232692.1	AP001596.6	CYYR1	NA	chr21:27838528-27853517	inner
CUST_23303_PI429285431	1.158757	A	0.89955586	A	1.19681581120978	0	lncRNA	24874-1_{1..386}	lnc-SLC5A8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC5A8-2:1	chr12	101252843	101253228	-	lnc-SLC5A8-2	lnc-SLC5A8-2:1	ENSG00000257325.1	RP11-263E1.1	ANO4	NA	chr12:101242843-101263040	inner
CUST_24242_PI429285431	0.9708703	A	0.8928617	A	1.05556000988184	0	lncRNA	25793-1_{1..453}	lnc-PFKP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PFKP-1:2	chr10	  3204474	  3204926	+	lnc-PFKP-1	lnc-PFKP-1:2	ENSG00000237399.1	RP11-298E9.3	PITRM1	NA	chr10:3194474-3214580	inner
CUST_42434_PI429285431	0.88115823	A	0.98269373	A	0.932040467148665	0	lncRNA	45157-1_{1..81}	ENST00000516158 ncrna:snoRNA chromosome:GRCh37:3:46692000:46692080:1 gene:ENSG00000251967 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516158 ncrna:snoRNA chromosome:GRCh37:3:46692000:46692080:1 gene:ENSG00000251967 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	 46692000	 46692080	+	ENSG00000251967	ENST00000516158	NA	NA	NA	NA	NA	inter
CUST_45695_PI429285431	0.9202303	A	0.91699225	A	1.00224696588067	0	lncRNA	50067-1_{1..1565}	"gi|310120595|ref|XR_109032.1| PREDICTED: Homo sapiens uncharacterized LOC100289424 (LOC100289424), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120595|ref|XR_109032.1| PREDICTED: Homo sapiens uncharacterized LOC100289424 (LOC100289424), misc_RNA"	NA	NA	NA	NA	NA	XR_109032.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001993	4.865902	P	5.546748	P	0.623799369658477	0	lncRNA	ENST00000438482	XR_109907	XR_109907	NA	Hs.570180	XLOC_001952	NA	ENST00000438482	THC2674901	NA	"PREDICTED: Homo sapiens hypothetical LOC100506014, transcript variant 1 (LOC100506014), miscRNA [XR_109907]"	chr2:3580873-3580814	hs|2p25.3	Agilent_HUMAN_G3V2	ENST00000438482	ENST00000438482	chr2	  3580814	  3580873	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20878_PI429285431	1.2787704	A	0.9333624	A	1.27051023717728	0	lncRNA	22510-1_{1..211}	lnc-CAMK4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CAMK4-2:2	chr5	111284557	111284767	+	lnc-CAMK4-2	lnc-CAMK4-2:2	ENSG00000250095.1	NREP-AS1	C5orf13	NA	chr5:111274557-111294685	inner
CUST_8470_PI429285431	4.2211957	P	4.551899	P	0.795148761859654	0	lncRNA	10036-1_{1..805}	lnc-RTN4IP1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RTN4IP1-2:4	chr6	107235134	107235938	-	lnc-RTN4IP1-2	lnc-RTN4IP1-2:4	ENSG00000235142	RP1-60O19.1	NA	NA	NA	inter
CUST_2660_PI429285431	2.6429517	A	2.5718298	P	1.05053330469556	0	lncRNA	2646-1_{1..453}	"transcript_id ""ENST00000359838.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000359838.3"" | genecode_v17"	chr6	147480061	147480513	+	ENSG00000196634.3	ENST00000359838.3	RP3-337D23.3	RP3-337D23.3-001	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-64.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70"	NA	inter
LNCA_21_P0012397	1.6359899	A	1.7218829	A	0.942201151309143	0	lncRNA	TCONS_l2_00018861	NA	NA	NA	NA	XLOC_l2_009887	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009887), lincRNA [TCONS_l2_00018861]"	chr3:130543091-130543150	hs|3q22.1	Agilent_HUMAN_G3V2	TCONS_l2_00018861	TCONS_l2_00018861	chr3	130543091	130543150	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33852_PI429285431	1.9194247	A	1.7246466	A	1.14454810484875	0	lncRNA	35397-1_{1..3000}	n340639|BC042835|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3101|NULL|-0.7131400|-0.3101854	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340639|BC042835|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3101|NULL|-0.7131400|-0.3101854	chr5	134895266	134898265	+	NA	NA	NA	NA	CXCL14	NA	chr5:134906369-134908842	inter
CUST_37082_PI429285431	0.9099301	A	1.5441252	A	0.644300178695088	0	lncRNA	38209-1_{1..1466}	n345526|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1075|NULL|-1.6501600|-0.2329272	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345526|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1075|NULL|-1.6501600|-0.2329272	chr2	 47739990	 47741455	-	NA	NA	NA	NA	KCNK12	NA	chr2:47747914-47756533	inter
CUST_46441_PI429285431	6.702731	P	6.870848	P	0.890003552621653	0	lncRNA	50649-1_{1..738}	"gi|112734812|ref|NR_003144.1| Homo sapiens acidic (leucine-rich) nuclear phosphoprotein 32 family, member A pseudogene 1 (ANP32AP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|112734812|ref|NR_003144.1| Homo sapiens acidic (leucine-rich) nuclear phosphoprotein 32 family, member A pseudogene 1 (ANP32AP1), non-coding RNA"	NA	NA	NA	NA	NA	NR_003144.1	NA	NA	NA	NA	NA	Unknown
CUST_10512_PI429285431	0.9246349	A	0.97573704	A	0.965198688264827	0	lncRNA	12038-1_{1..563}	lnc-PPP2R5B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP2R5B-1:1	chr11	 64691658	 64692220	+	lnc-PPP2R5B-1	lnc-PPP2R5B-1:1	XLOC_009164	linc-PPP2R5B-1	ATG2A	NA	chr11:64681658-64684722	inter
CUST_5423_PI429285431	2.7452688	A	2.7365837	P	1.00603820951135	0	lncRNA	5357-1_{1..796}	"transcript_id ""ENST00000570038.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000570038.1"" | genecode_v17"	chr16	  9560512	  9561307	+	ENSG00000260071.1	ENST00000570038.1	RP11-418I22.2	RP11-418I22.2-001	NA	NA	NA	inter
CUST_43349_PI429285431	3.9657118	P	4.562336	P	0.661299538556718	0	lncRNA	48170-1_{1..3000}	"gi|383276540|ref|NR_047520.1| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|383276540|ref|NR_047520.1| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 2, non-coding RNA"	Chr1	   762971	   765970	+	643837	NR_047520.1	NA	NA	NA	NA	NA	inter
CUST_49874_PI429285431	2.7985945	A	3.3513803	P	0.681702509948913	0	lncRNA	53625-1_{1..1593}	hg19_lincRNAsTranscripts_TCONS_l2_00026040 range=chr7:76606465-76634210 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026040 range=chr7:76606465-76634210 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 76606465	 76608057	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008956	2.262289	A	1.7670767	A	1.40952815920403	0	lncRNA	TCONS_00024434	NA	NA	NA	NA	XLOC_011751	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011751), lincRNA [TCONS_00024434]"	chr16:63881290-63881349	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024434	TCONS_00024434	chr16	 63881290	 63881349	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25534_PI429285431	1.7058514	A	2.6271687	A	0.528026668041968	0	lncRNA	27064-1_{1..1355}	lnc-RPS25-1:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS25-1:14	chr11	118899932	118901286	-	lnc-RPS25-1	lnc-RPS25-1:14	ENSG00000137700.10	SLC37A4	SLC37A4	NA	chr11:118895061-118901616	inner
CUST_11791_PI429285431	2.8161833	A	1.6072946	A	2.31159507295535	0	lncRNA	13372-1_{1..2892}	lnc-SRD5A3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRD5A3-1:1	chr4	 56252510	 56255401	+	lnc-SRD5A3-1	lnc-SRD5A3-1:1	XLOC_003544	linc-TMEM165	TMEM165	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.20;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40chr4:56262090-56264858"	NA	inter
LNCA_21_P0009571	0.8759551	A	0.8785695	A	0.998189476988915	0	lncRNA	TCONS_00026551	NA	NA	NA	NA	XLOC_012876	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012876), lincRNA [TCONS_00026551]"	chr18:69449376-69449317	hs|18q22.3	Agilent_HUMAN_G3V2	TCONS_00026551	TCONS_00026551	chr18	 69449317	 69449376	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39570_PI429285431	1.6450684	A	0.8969259	A	1.67962888047341	0	lncRNA	40514-1_{1..1980}	n387533|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011gvv.1||2.6522200|-0.2479041	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387533|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011gvv.1||2.6522200|-0.2479041	chr6	  2370338	  2372317	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_188_PI429201921	0.90107894	A	0.874458	A	1.0186235238572	0	lncRNA	154-1_{1..3000}	TC09001974.hg.1	TCONS_00015685-XLOC_007378 // Rinn lincRNAs // linc-ANKRD20A1-1 chr9:+:67914828-67919763 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:+:67914828-67919763	NA	Affy_HUMAN_HTA2.0	TCONS_00015685-XLOC_007378	linc-ANKRD20A1-1	chr9	 67914828	 67919763	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38712_PI429285431	3.7600603	P	3.6576705	P	1.07355030844977	0	lncRNA	39706-1_{1..1759}	n384145|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003apb.1||-0.8959720|-0.2774640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384145|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003apb.1||-0.8959720|-0.2774640	chr22	 36633472	 36635230	-	NA	NA	NA	NA	APOL2	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70chr22:36623472-36636000"	NA	inner
CUST_15562_PI429285431	0.8848525	A	0.8884194	A	0.997530667152336	0	lncRNA	17247-1_{1..2248}	lnc-HES1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-HES1-3:2	chr3	193974974	193977221	+	lnc-HES1-3	lnc-HES1-3:2	XLOC_002977	linc-FAM43A-4	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-25.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90"	NA	inter
CUST_12642_PI429285431	11.030438	P	11.233435	P	0.868743991651091	0	lncRNA	14260-1_{1..583}	lnc-TPTE-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TPTE-3:4	chr21	  9827008	  9827590	-	lnc-TPTE-3	lnc-TPTE-3:4	XLOC_013994	linc-S100B-2	NA	NA	NA	inter
CUST_43664_PI429285431	4.3290734	P	2.8581715	A	2.77195127847443	0	lncRNA	48419-1_{1..2247}	"gi|310118766|ref|XR_108305.1| PREDICTED: Homo sapiens uncharacterized LOC100127910 (LOC100127910), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118766|ref|XR_108305.1| PREDICTED: Homo sapiens uncharacterized LOC100127910 (LOC100127910), misc_RNA"	NA	NA	NA	NA	NA	XR_108305.1	NA	NA	NA	NA	NA	Unknown
CUST_30935_PI429285431	5.3836856	P	5.417453	P	0.976866012499801	0	lncRNA	32723-1_{1..425}	n337004|DQ065759|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341042|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341042|-0.8847270|-0.2454608	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337004|DQ065759|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341042|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341042|-0.8847270|-0.2454608	chr2	190444574	190444998	-	NA	NA	NA	NA	SLC40A1	NA	chr2:190434574-190445537	inner
CUST_16257_PI429285431	3.4188218	A	1.5525236	A	3.64595865152318	0	lncRNA	17961-1_{1..3000}	lnc-PDE6B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE6B-1:2	chr4	   575913	   578912	+	lnc-PDE6B-1	lnc-PDE6B-1:2	XLOC_003411	linc-PDE6B	NA	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
CUST_5170_PI429285431	1.5283313	A	1.1342641	A	1.31409283549862	0	lncRNA	5111-1_{1..539}	"transcript_id ""ENST00000559148.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559148.1"" | genecode_v17"	chr15	 46985486	 46986024	+	ENSG00000259255.1	ENST00000559148.1	RP11-627D16.1	RP11-627D16.1-001	NA	NA	NA	inter
CUST_22355_PI429285431	2.9512732	A	3.1503267	P	0.871121887404386	0	lncRNA	23949-1_{1..622}	lnc-CCDC23-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC23-1:4	chr1	 43311924	 43312545	-	lnc-CCDC23-1	lnc-CCDC23-1:4	ENSG00000241784.1	RP11-342M1.2	ERMAP	NA	chr1:43301924-43310660	inter
LNCA_21_P0009881	1.8708189	A	1.4043033	A	1.38176818546406	0	lncRNA	ENST00000455132	NA	NA	NA	NA	XLOC_013653	NA	ENST00000455132	NA	NA	"BROAD Institute lincRNA (XLOC_013653), lincRNA [TCONS_00028005]"	chr20:12224602-12224543	hs|20p12.1	Agilent_HUMAN_G3V2	ENST00000455132	ENST00000455132	chr20	 12224543	 12224602	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42484_PI429285431	2.9081113	A	1.0699317	A	3.57558574365085	0	lncRNA	45244-1_{1..72}	ENST00000516200 ncrna:snoRNA chromosome:GRCh37:14:101463990:101464061:1 gene:ENSG00000252009 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516200 ncrna:snoRNA chromosome:GRCh37:14:101463990:101464061:1 gene:ENSG00000252009 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101463990	101464061	+	ENSG00000252009	ENST00000516200	NA	NA	NA	NA	NA	inter
CUST_37975_PI429285431	3.61368	P	3.4220388	P	1.142062179282	0	lncRNA	39063-1_{1..989}	n346529|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2079|NULL|-1.2934300|-0.1996033	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n346529|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2079|NULL|-1.2934300|-0.1996033	chr5	162990894	162991882	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21073_PI429285431	6.909692	P	6.974853	P	0.95583864320704	0	lncRNA	22699-1_{1..227}	lnc-TRPT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRPT1-1:1	chr11	 64001666	 64001892	-	lnc-TRPT1-1	lnc-TRPT1-1:1	ENSG00000256116.1	RP11-783K16.14	NUDT22	NA	chr11:63993738-63997488	inner
CUST_26136_PI429285431	4.1403375	P	4.350807	P	0.864255928482821	0	lncRNA	27647-1_{1..416}	lnc-MED13L-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MED13L-4:2	chr12	116039460	116039875	-	lnc-MED13L-4	lnc-MED13L-4:2	ENSG00000257407.1	RP11-1028N23.4	NA	NA	NA	inter
CUST_44473_PI429285431	8.636053	P	8.995261	P	0.77959243707016	0	lncRNA	49077-1_{1..2342}	"gi|380420346|ref|NR_046441.1| Homo sapiens MAFF interacting protein (pseudogene) (MAFIP), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|380420346|ref|NR_046441.1| Homo sapiens MAFF interacting protein (pseudogene) (MAFIP), transcript variant 3, non-coding RNA"	NT_113888.1	    53589	    55930	-	727764	NR_046441.1	NA	NA	NA	NA	NA	Unknown
CUST_25150_PI429285431	5.2044578	P	5.767158	P	0.677033816276473	0	lncRNA	26688-1_{1..359}	lnc-ESCO2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ESCO2-2:1	chr8	 27767701	 27768059	+	lnc-ESCO2-2	lnc-ESCO2-2:1	ENSG00000253397.1	RP11-597M17.1	SCARA5	NA	chr8:27757701-27777827	inner
CUST_16608_PI429285431	0.8912782	A	0.89203924	A	0.999472626380085	0	lncRNA	18308-1_{1..271}	lnc-FAM75A7-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM75A7-2:5	chr9	 65777704	 65777974	-	lnc-FAM75A7-2	lnc-FAM75A7-2:5	XLOC_007703	linc-FAM75A7-9	NA	NA	NA	inter
CUST_5002_PI429285431	3.5023391	P	3.8145669	P	0.805397109668098	0	lncRNA	4945-1_{1..461}	"transcript_id ""ENST00000452514.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452514.2"" | genecode_v17"	chr14	101295948	101296408	+	ENSG00000214548.9	ENST00000452514.2	MEG3	MEG3-023	NA	NA	NA	inter
CUST_23716_PI429285431	9.977837	P	10.694719	P	0.608410940044677	0	lncRNA	25280-1_{1..430}	lnc-SAMD14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAMD14-1:1	chr17	 48179217	 48179646	-	lnc-SAMD14-1	lnc-SAMD14-1:1	ENSG00000250282.1	RP5-875H18.4	PDK2	NA	chr17:48172101-48188733	inner
CUST_31510_PI429285431	0.8978335	A	0.9084244	A	0.992685827235785	0	lncRNA	33271-1_{1..2740}	n337994|AK124922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|380|NULL|-1.0988900|-0.3249960	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337994|AK124922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|380|NULL|-1.0988900|-0.3249960	chr22	 26121102	 26123841	+	NA	NA	NA	NA	ADRBK2	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00chr22:26111102-26125259"	NA	inner
CUST_9203_PI429285431	5.093859	P	5.2002597	P	0.928902641213917	0	lncRNA	10715-1_{1..2170}	lnc-C22orf31-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C22orf31-1:1	chr22	 29427379	 29429548	-	lnc-C22orf31-1	lnc-C22orf31-1:1	ENSG00000177993	ZNRF3-AS1	ZNRF3	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50chr22:29417379-29437464"	NA	inner
CUST_30624_PI429285431	5.350588	P	5.6475883	P	0.813943015815725	0	lncRNA	32406-1_{1..386}	n335964|X72457|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323299|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323299|2.4637300|-0.1473087	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335964|X72457|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323299|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323299|2.4637300|-0.1473087	chr2	 89185096	 89185481	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33262_PI429285431	2.2242818	A	2.821732	A	0.660921026769344	0	lncRNA	34848-1_{1..1437}	n339970|BC038728|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2423|NULL|-1.1522100|-0.4229137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339970|BC038728|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2423|NULL|-1.1522100|-0.4229137	chr10	 13568764	 13570200	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51230_PI429285431	3.9924562	P	4.245039	P	0.83939233833148	0	lncRNA	54846-3_{6001..7199}	hg19_lincRNAsTranscripts_TCONS_l2_00008416 range=chr15:23094157-23106207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008416 range=chr15:23094157-23106207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 23100157	 23101355	+	NA	NA	NA	NA	NIPA1	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.70chr15:23084157-23086843"	NA	inter
CUST_50590_PI429285431	0.9073806	A	0.90499645	A	1.00165393309163	0	lncRNA	54281-1_{1..637}	hg19_lincRNAsTranscripts_TCONS_l2_00003112 range=chr10:77056079-77118804 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003112 range=chr10:77056079-77118804 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 77056079	 77056715	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47457_PI429285431	0.9059588	A	0.91132027	A	0.996290609037195	0	lncRNA	51486-1_{1..1311}	"gi|397139762|ref|XR_158959.1| PREDICTED: Homo sapiens uncharacterized LOC100996335 (LOC100996335), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139762|ref|XR_158959.1| PREDICTED: Homo sapiens uncharacterized LOC100996335 (LOC100996335), misc_RNA"	NA	NA	NA	NA	NA	XR_158959.1	NA	NA	NA	NA	NA	Unknown
CUST_38756_PI429285431	7.94792	P	8.183747	P	0.849198071471644	0	lncRNA	39747-1_{1..1119}	n384322|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003eme.1||1.0572600|-0.1850376	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n384322|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003eme.1||1.0572600|-0.1850376	chr3	129115059	129116177	-	NA	NA	NA	NA	C3orf25	NA	chr3:129120164-129126797	inter
LNCA_21_P0009526	6.447208	P	6.9941244	P	0.684481569121616	0	lncRNA	TCONS_00026418	NA	NA	NA	NA	XLOC_012763	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012763), lincRNA [TCONS_00026418]"	chr18:10410058-10409999	hs|18p11.22	Agilent_HUMAN_G3V2	TCONS_00026418	TCONS_00026418	chr18	 10409999	 10410058	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48393_PI429285431	1.0616307	A	1.4142423	A	0.78316511030823	0	lncRNA	52246-1_{1..688}	hg19_lincRNAsTranscripts_TCONS_l2_00001461 range=chr1:117004306-117020870 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001461 range=chr1:117004306-117020870 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	117004306	117004993	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45283_PI429285431	10.331331	P	10.875204	P	0.685927023582248	0	lncRNA	49731-1_{1..1691}	"gi|333805638|ref|NR_038270.1| Homo sapiens SHANK-associated RH domain interactor (SHARPIN), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333805638|ref|NR_038270.1| Homo sapiens SHANK-associated RH domain interactor (SHARPIN), transcript variant 2, non-coding RNA"	Chr8	145153540	145155230	-	81858	NR_038270.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0013824	0.8927829	A	0.9082879	A	0.989310298289062	0	lncRNA	TCONS_l2_00030545	NA	NA	NA	NA	XLOC_l2_015766	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015766), lincRNA [TCONS_l2_00030545]"	chrX:79544432-79544373	hs|Xq21.1	Agilent_HUMAN_G3V2	TCONS_l2_00030545	TCONS_l2_00030545	chrX	 79544373	 79544432	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15428_PI429285431	1.7381382	A	2.8848774	A	0.451644892801712	0	lncRNA	17113-1_{1..473}	lnc-TMEM18-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM18-4:2	chr2	   740126	   740598	-	lnc-TMEM18-4	lnc-TMEM18-4:2	XLOC_001933	linc-TMEM18-5	NA	NA	NA	inter
CUST_34589_PI429285431	0.8987495	A	2.591676	A	0.309298876909272	0	lncRNA	36047-1_{1..2335}	n341473|BC082237|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3943|NULL|-1.0024500|-0.2981567	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n341473|BC082237|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3943|NULL|-1.0024500|-0.2981567	chr8	 29605840	 29608174	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26001_PI429285431	5.5634546	P	6.0036263	P	0.737046884991215	0	lncRNA	27520-1_{1..632}	lnc-MCTS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MCTS1-1:1	chrX	119754425	119755056	+	lnc-MCTS1-1	lnc-MCTS1-1:1	ENSG00000244439.1	RP4-655L22.2	MCTS1	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-28.71;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-27.30chrX:119744425-119755014"	NA	inner
CUST_7283_PI429285431	0.90462387	A	0.916117	A	0.992065217257321	0	lncRNA	8178-1_{1..316}	"transcript_id ""ENST00000410230.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410230.1"" | genecode_v17"	chr11	 13374755	 13375070	+	ENSG00000222162.1	ENST00000410230.1	RN7SKP151	RN7SKP151-201	ARNTL	NA	chr11:13364755-13385070	inner
LNCA_21_P0002762	3.1105204	P	3.1577644	P	0.967783333877017	0	lncRNA	ENST00000498624	NA	BC143890	NA	NA	XLOC_002741	NA	ENST00000498624	NA	NA	"BROAD Institute lincRNA (XLOC_002741), lincRNA [TCONS_00005563]"	chr3:101713502-101715373	hs|3q12.3	Agilent_HUMAN_G3V2	ENST00000498624	ENST00000498624	chr3	101713502	101715373	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30102_PI429285431	0.8989504	A	0.90723455	A	0.99427431933277	0	lncRNA	31874-1_{1..499}	n334645|AB097931|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000242193|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000242193|0.4024240|-0.3225580	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334645|AB097931|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000242193|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000242193|0.4024240|-0.3225580	chr3	 12330337	 12330835	+	NA	NA	NA	NA	PPARG	NA	chr3:12329349-12431333	inner
CUST_31249_PI429285431	1.2998631	A	2.4263186	A	0.458039683304729	0	lncRNA	33040-1_{1..268}	n337703|AF069136|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|85|NULL|-1.3326800|-0.1449271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337703|AF069136|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|85|NULL|-1.3326800|-0.1449271	chrX	 53248026	 53248293	+	NA	NA	NA	NA	KDM5C	NA	chrX:53238026-53254604	inner
CUST_21430_PI429285431	0.89401805	A	0.9074443	A	0.990736802880394	0	lncRNA	23049-1_{1..1704}	lnc-DLX5-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DLX5-2:4	chr7	 96643237	 96644940	-	lnc-DLX5-2	lnc-DLX5-2:4	ENSG00000231764.2	DLX6-AS1	DLX5	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20chr7:96649702-96653337"	NA	inter
LNCA_21_P0010011	1.6287854	A	1.0909408	A	1.45180189053634	0	lncRNA	TCONS_00028329	NA	NA	NA	NA	XLOC_013680	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013680), lincRNA [TCONS_00028329]"	chr20:22393845-22382055	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028329	TCONS_00028329	chr20	 22382055	 22393845	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38559_PI429285431	0.9082141	A	0.9136525	A	0.996237484439879	0	lncRNA	39569-1_{1..3000}	n383439|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002nrb.1||6.9951600|-0.4716295	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n383439|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002nrb.1||6.9951600|-0.4716295	chr19	 23299776	 23302775	+	NA	NA	NA	NA	ZNF730	NA	chr19:23289776-23329769	inter
CUST_50051_PI429285431	1.7653284	A	0.9228629	A	1.79311187130777	0	lncRNA	53787-1_{1..358}	hg19_lincRNAsTranscripts_TCONS_l2_00027766 range=chr8:55765016-55769672 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027766 range=chr8:55765016-55769672 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 55765016	 55765373	+	NA	NA	NA	NA	LOC100287651	NA	chr8:55755016-55779672	inter
CUST_37569_PI429285431	1.0058613	A	0.8967068	A	1.07859593368506	0	lncRNA	38672-1_{1..2344}	n346046|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1596|NULL|-1.4283300|-0.3568232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346046|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1596|NULL|-1.4283300|-0.3568232	chr3	105905671	105908014	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48482_PI429285431	1.5624015	A	1.223237	A	1.26502377557148	0	lncRNA	52335-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00000881 range=chr1:228382416-228391302 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000881 range=chr1:228382416-228391302 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	228382416	228385415	+	NA	NA	NA	NA	OBSCN	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.54;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20chr1:228395861-228401302"	NA	inter
CUST_51620_PI429285431	3.8393416	P	4.1211014	P	0.822587013075249	0	lncRNA	55189-1_{1..2573}	hg19_lincRNAsTranscripts_TCONS_l2_00010777 range=chr17:40697486-40700225 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010777 range=chr17:40697486-40700225 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 40697486	 40700058	+	NA	NA	NA	NA	HSD17B1	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60chr17:40703984-40707232"	NA	inter
CUST_41520_PI429285431	9.194746	P	9.369584	P	0.885866987382772	0	lncRNA	42758-1_{1..95}	ENST00000385095 ncrna:miRNA chromosome:GRCh37:22:23040391:23040485:1 gene:ENSG00000207830 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385095 ncrna:miRNA chromosome:GRCh37:22:23040391:23040485:1 gene:ENSG00000207830 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 23040391	 23040485	+	ENSG00000207830	ENST00000385095	NA	NA	NA	NA	NA	inter
LNCA_21_P0010072	1.0079054	A	0.8726893	A	1.09825730844707	0	lncRNA	TCONS_00028469	NA	NA	NA	NA	XLOC_013842	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013842), lincRNA [TCONS_00028469]"	chr20:61775740-61775681	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028469	TCONS_00028469	chr20	 61775681	 61775740	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33015_PI429285431	1.2105628	A	1.4276205	A	0.860318221846815	0	lncRNA	34631-1_{1..1777}	n339698|AF279780|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2143|NULL|-1.2283300|-0.3444785	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339698|AF279780|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2143|NULL|-1.2283300|-0.3444785	chr3	178243274	178245050	-	NA	NA	NA	NA	KCNMB2	NA	chr3:178254224-178562217	inner
CUST_33877_PI429285431	0.9099375	A	1.3247216	A	0.750131743816365	0	lncRNA	35421-1_{1..2495}	n340666|BC041908|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3128|NULL|-1.0949900|-0.3467753	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340666|BC041908|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3128|NULL|-1.0949900|-0.3467753	chr5	140937877	140940371	+	NA	NA	NA	NA	DIAPH1	NA	chr5:140927877-140954827	inner
CUST_29200_PI429285431	0.93347865	A	1.306267	A	0.772288423046282	0	lncRNA	30947-1_{1..449}	n326717|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099750|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099750|-1.3728200|-0.2871134	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326717|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099750|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099750|-1.3728200|-0.2871134	chr1	  5046378	  5046826	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11428_PI429285431	0.8796201	A	0.8700617	A	1.00664737437881	0	lncRNA	12996-1_{1..667}	lnc-CMPK2-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CMPK2-4:3	chr2	  6790238	  6790904	-	lnc-CMPK2-4	lnc-CMPK2-4:3	XLOC_001964	linc-RNASEH1-13	NA	NA	NA	inter
CUST_23813_PI429285431	2.7269921	A	2.4258385	A	1.23212924806877	0	lncRNA	25378-1_{1..3000}	lnc-LEF1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LEF1-2:1	chr4	108861277	108864276	-	lnc-LEF1-2	lnc-LEF1-2:1	ENSG00000249604.1	RP11-286E11.2	CYP2U1	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80chr4:108852717-108872411"	NA	inner
CUST_5307_PI429285431	1.5308942	A	1.3758541	A	1.11345256643751	0	lncRNA	5247-1_{1..428}	"transcript_id ""ENST00000554542.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554542.1"" | genecode_v17"	chr15	 93111420	 93111847	-	ENSG00000258647.1	ENST00000554542.1	RP11-304N14.2	RP11-304N14.2-001	NA	NA	NA	inter
LNCA_21_P0010533	0.8719696	A	0.8735722	A	0.998889779080209	0	lncRNA	ENST00000436262	NA	NA	NA	NA	XLOC_l2_000267	NA	ENST00000436262	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000267), lincRNA [TCONS_l2_00000337]"	chr1:74175068-74180654	hs|1p31.1	Agilent_HUMAN_G3V2	ENST00000436262	ENST00000436262	chr1	 74175068	 74180654	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013816	2.9386826	P	1.7360812	A	2.30154300501624	0	lncRNA	TCONS_l2_00030513	NA	NA	NA	NA	XLOC_l2_015744	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015744), lincRNA [TCONS_l2_00030513]"	chrX:65041696-65041637	hs|Xq12	Agilent_HUMAN_G3V2	TCONS_l2_00030513	TCONS_l2_00030513	chrX	 65041637	 65041696	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13512_PI429285431	6.332081	P	6.3091893	P	1.01599387166593	0	lncRNA	15152-1_{1..657}	lnc-DEC1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DEC1-3:1	chr9	118454048	118454704	+	lnc-DEC1-3	lnc-DEC1-3:1	XLOC_007531	linc-PAPPA-4	NA	NA	NA	inter
CUST_13531_PI429285431	4.575374	P	4.8185234	P	0.844898885373588	0	lncRNA	15171-1_{1..474}	lnc-AL445989.1-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL445989.1-7:2	chr13	 62807278	 62807751	+	lnc-AL445989.1-7	lnc-AL445989.1-7:2	XLOC_010407	linc-C13orf34-18	NA	NA	NA	inter
LNCA_21_P0003269	3.9267888	P	4.5332212	P	0.656818924377615	0	lncRNA	XR_108523	XR_108523	XR_108523	NA	NA	LOC100505710	uncharacterized LOC100505710	NA	THC2661592	NA	"PREDICTED: Homo sapiens hypothetical LOC100505710 (LOC100505710), miscRNA [XR_108523]"	chr3:184456481-184456540	hs|3q27.1	Agilent_HUMAN_G3V2	XR_108523	XR_108523	chr3	184456481	184456540	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32173_PI429285431	0.9068359	A	0.92079455	A	0.990371257186634	0	lncRNA	33872-2_{3001..3175}	n338744|BC041877|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1165|NULL|-1.0556600|-0.3587494	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n338744|BC041877|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1165|NULL|-1.0556600|-0.3587494	chr13	 54392553	 54392727	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14251_PI429285431	2.8459387	A	3.6787472	P	0.561435229703689	0	lncRNA	15908-1_{1..236}	lnc-ETAA1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ETAA1-6:1	chr2	 67348944	 67349179	+	lnc-ETAA1-6	lnc-ETAA1-6:1	XLOC_001511	linc-ETAA1-4	NA	NA	NA	inter
CUST_44199_PI429285431	1.7701355	A	1.0736951	A	1.62050154934228	0	lncRNA	48854-3_{6001..7319}	"gi|299782590|ref|NR_033860.1| Homo sapiens uncharacterized LOC440970 (LOC440970), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299782590|ref|NR_033860.1| Homo sapiens uncharacterized LOC440970 (LOC440970), non-coding RNA"	Chr3	 84693556	 84694874	-	440970	NR_033860.1	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70"	NA	inter
CUST_13205_PI429285431	3.5608294	P	3.8290288	P	0.830355249814383	0	lncRNA	14833-1_{1..843}	lnc-CLVS1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CLVS1-3:3	chr8	 62797845	 62798687	+	lnc-CLVS1-3	lnc-CLVS1-3:3	XLOC_006817	linc-NKAIN3-1	NA	NA	NA	inter
CUST_51984_PI429285431	1.0539948	A	1.367607	A	0.804624626968015	0	lncRNA	55522-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017148 range=chr21:16190134-16254319 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017148 range=chr21:16190134-16254319 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 16190134	 16193133	-	NA	NA	NA	NA	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-13.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00"	NA	inter
CUST_46603_PI429285431	0.9034925	A	1.1705579	A	0.831008189621454	0	lncRNA	50783-1_{1..2453}	"gi|213385260|ref|NR_024456.1| Homo sapiens uncharacterized LOC100190986 (LOC100190986), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|213385260|ref|NR_024456.1| Homo sapiens uncharacterized LOC100190986 (LOC100190986), non-coding RNA"	Chr16	 21443324	 21445776	-	100190986	NR_024456.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.46;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-14.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90"	NA	inter
CUST_29907_PI429285431	7.29644	P	7.50445	P	0.86573056471186	0	lncRNA	31670-1_{1..339}	n334022|M23041|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194871|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194871|2.1104100|-0.0596197	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334022|M23041|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194871|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194871|2.1104100|-0.0596197	chr22	 35777135	 35777473	+	NA	NA	NA	NA	HMOX1	NA	chr22:35777060-35790207	inner
LNCA_21_P0009560	0.9105252	A	0.93108386	A	0.985850875982109	0	lncRNA	TCONS_00026526	NA	NA	NA	NA	XLOC_012849	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012849), lincRNA [TCONS_00026526]"	chr18:53443309-53443250	hs|18q21.2	Agilent_HUMAN_G3V2	TCONS_00026526	TCONS_00026526	chr18	 53443250	 53443309	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30050_PI429285431	5.0885873	P	5.3620768	P	0.827316063797243	0	lncRNA	31819-1_{1..315}	n334554|U52701|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220268_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220268_03|1.0853000|-0.1336975	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334554|U52701|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220268_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220268_03|1.0853000|-0.1336975	chr6	 32065953	 32066267	-	NA	NA	NA	NA	TNXB	NA	chr6:32055953-32077151	inner
CUST_12176_PI429285431	2.9982631	A	3.241122	P	0.845069030714097	0	lncRNA	13776-1_{1..1357}	lnc-AC012313.1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC012313.1-1:6	chr19	 58918781	 58920137	-	lnc-AC012313.1-1	lnc-AC012313.1-1:6	XLOC_013429	linc-ZNF837	ZNF584	NA	chr19:58920063-58929467	inter
CUST_15713_PI429285431	4.968931	P	5.078445	P	0.926900253756065	0	lncRNA	17400-2_{3001..6000}	lnc-QSOX2-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-QSOX2-1:13	chr9	139160802	139163801	-	lnc-QSOX2-1	lnc-QSOX2-1:13	XLOC_007895	linc-QSOX2	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50"	NA	inter
CUST_36710_PI429285431	0.91953284	A	0.9139162	A	1.00390074636467	0	lncRNA	37890-2_{3001..6000}	n345197|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_746|NULL|-1.3517400|-0.2884354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345197|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_746|NULL|-1.3517400|-0.2884354	chr13	 45924524	 45927523	-	NA	NA	NA	NA	TPT1	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-14.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40chr13:45911524-45915297"	NA	inter
CUST_21779_PI429285431	1.0555184	A	0.91954744	A	1.0988320989694	0	lncRNA	23389-1_{1..612}	lnc-SERAC1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SERAC1-3:1	chr6	158295965	158296576	-	lnc-SERAC1-3	lnc-SERAC1-3:1	ENSG00000229502.1	RP11-52J3.2	SNX9	"hg19_refFlat_SNX9:range=chr6:158244467-1583638705'pad=0,hg19_refFlat_SNX9:range=chr6:158244467-1583638705'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80chr6:158285965-158306242"	NA	inner
CUST_14809_PI429285431	1.7931108	A	3.813205	A	0.246542077764857	0	lncRNA	16471-1_{1..426}	lnc-AJAP1-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AJAP1-3:5	chr1	  5063750	  5064175	+	lnc-AJAP1-3	lnc-AJAP1-3:5	XLOC_000036	linc-KCNAB2-2	NA	NA	NA	inter
CUST_32256_PI429285431	0.89113617	A	2.0421066	A	0.450322219796667	0	lncRNA	33946-1_{1..1938}	n338830|BC007278|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1253|NULL|-0.8629830|-0.2974652	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338830|BC007278|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1253|NULL|-0.8629830|-0.2974652	chr2	 48168834	 48170771	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001280	2.2207887	A	1.8378478	A	1.30399731591648	0	lncRNA	TCONS_00000884	NA	NA	NA	NA	XLOC_000129	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000129), lincRNA [TCONS_00000884]"	chr1:32814097-32814156	hs|1p35.1	Agilent_HUMAN_G3V2	TCONS_00000884	TCONS_00000884	chr1	 32814097	 32814156	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14509_PI429285431	2.5022812	A	2.5299098	A	0.981031523199169	0	lncRNA	16175-1_{1..328}	lnc-PRDM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRDM1-1:1	chr6	106527897	106528224	+	lnc-PRDM1-1	lnc-PRDM1-1:1	XLOC_005410	linc-PRDM1-1	PRDM1	NA	chr6:106534195-106537926	inter
CUST_45994_PI429285431	1.052863	A	1.0633894	A	0.992730209219053	0	lncRNA	50283-1_{1..3000}	"gi|299829205|ref|NR_033890.1| Homo sapiens uncharacterized LOC338817 (LOC338817), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|299829205|ref|NR_033890.1| Homo sapiens uncharacterized LOC338817 (LOC338817), non-coding RNA"	Chr12	 11700964	 11703963	+	338817	NR_033890.1	NA	NA	NA	NA	NA	inter
CUST_18665_PI429285431	3.1936593	P	2.4249902	A	1.70369738120929	0	lncRNA	20367-1_{1..1551}	lnc-CDK13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CDK13-1:1	chr7	 39894632	 39896182	+	lnc-CDK13-1	lnc-CDK13-1:1	ENSG00000249078	AC093081.1	NA	"hg19_refFlat_RWDD4:range=chr4:184562589-1845801055'pad=0,hg19_refFlat_RWDD4:range=chr4:184562589-1845801055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40"	NA	inter
CUST_41605_PI429285431	3.9253998	P	4.619389	P	0.618142257849638	0	lncRNA	42959-1_{1..87}	ENST00000385071 ncrna:miRNA chromosome:GRCh37:19:54254465:54254551:1 gene:ENSG00000207806 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385071 ncrna:miRNA chromosome:GRCh37:19:54254465:54254551:1 gene:ENSG00000207806 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54254465	 54254551	+	ENSG00000207806	ENST00000385071	NA	NA	NA	NA	NA	inter
CUST_21021_PI429285431	1.5086713	A	2.4056137	A	0.537023676201403	0	lncRNA	22649-1_{1..562}	lnc-TNFRSF17-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNFRSF17-2:1	chr16	 11989346	 11989907	+	lnc-TNFRSF17-2	lnc-TNFRSF17-2:1	ENSG00000263307.1	RP11-166B2.8	GSPT1	NA	chr16:11979346-11999468	inner
CUST_23798_PI429285431	0.9030422	A	0.9933716	A	0.939308259348174	0	lncRNA	25364-1_{1..3000}	lnc-CAPN3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CAPN3-1:2	chr15	 42703945	 42706944	+	lnc-CAPN3-1	lnc-CAPN3-1:2	ENSG00000258461.1	RP11-164J13.1	ZFP106	NA	chr15:42705021-42714515	inner
CUST_10971_PI429285431	5.2398047	P	5.064689	P	1.12905494814051	0	lncRNA	12513-1_{1..300}	lnc-GBP5-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GBP5-3:1	chr1	 90227506	 90227805	-	lnc-GBP5-3	lnc-GBP5-3:1	XLOC_000911	linc-GBP5-4	NA	NA	NA	inter
CUST_25812_PI429285431	2.9143085	A	1.8271987	A	2.12448005583225	0	lncRNA	27333-1_{1..445}	lnc-KIAA0913-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0913-1:1	chr10	 75574187	 75574631	+	lnc-KIAA0913-1	lnc-KIAA0913-1:1	ENSG00000224195.1	RP11-574K11.5	CAMK2G	NA	chr10:75572259-75584495	inner
CUST_22331_PI429285431	1.7146081	A	0.9525236	A	1.69593925910844	0	lncRNA	23928-3_{6001..9000}	lnc-RP11-324D17.2.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-324D17.2.1-3:1	chr16	 54039349	 54042348	+	lnc-RP11-324D17.2.1-3	lnc-RP11-324D17.2.1-3:1	ENSG00000261389.1	RP11-357N13.7	FTO	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-23.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10chr16:54023349-54058240"	NA	inner
LNCA_21_P0007410	2.7141743	A	2.6240966	A	1.06442750835241	0	lncRNA	TCONS_00019779	NA	NA	NA	NA	XLOC_009578	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009578), lincRNA [TCONS_00019779]"	chr11:119859240-119859181	hs|11q23.3	Agilent_HUMAN_G3V2	TCONS_00019779	TCONS_00019779	chr11	119859181	119859240	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36187_PI429285431	1.9814818	A	1.8945981	A	1.06207356608982	0	lncRNA	37450-1_{1..826}	n344738|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_287|NULL|-1.5547700|-0.3438112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344738|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_287|NULL|-1.5547700|-0.3438112	chr2	 39722100	 39722925	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004148	0.87644565	A	0.87334985	A	1.00214814901474	0	lncRNA	ENST00000505107	NA	NA	NA	NA	XLOC_004907	NA	ENST00000505107	NA	NA	"BROAD Institute lincRNA (XLOC_004907), lincRNA [TCONS_00009714]"	chr5:80247214-80247155	hs|5q14.1	Agilent_HUMAN_G3V2	ENST00000505107	ENST00000505107	chr5	 80247155	 80247214	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1590_PI429285431	1.0629429	A	1.187212	A	0.917468734662902	0	lncRNA	1576-1_{1..592}	"transcript_id ""ENST00000492416.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000492416.2"" | genecode_v17"	chr3	182362002	182362593	+	ENSG00000238837.3	ENST00000492416.2	RP11-646E18.2	RP11-646E18.2-001	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90"	NA	inter
LNCA_21_P0001254	9.55411	P	9.525393	P	1.02010453525003	0	lncRNA	TCONS_00000804	NA	NA	NA	NA	XLOC_000019	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000019), lincRNA [TCONS_00000804]"	chr1:1538251-1538310	hs|1p36.33	Agilent_HUMAN_G3V2	TCONS_00000804	TCONS_00000804	chr1	  1538251	  1538310	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16447_PI429285431	4.9384246	P	4.697383	P	1.1818456248703	0	lncRNA	18146-1_{1..331}	lnc-RAB11FIP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB11FIP2-1:1	chr10	119878335	119878665	-	lnc-RAB11FIP2-1	lnc-RAB11FIP2-1:1	XLOC_008965	linc-RAB11FIP2	NA	NA	NA	inter
CUST_48698_PI429285431	1.82287	A	2.0618322	A	0.847354636163101	0	lncRNA	52539-1_{1..521}	hg19_lincRNAsTranscripts_TCONS_l2_00014823 range=chr2:114286364-114293431 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014823 range=chr2:114286364-114293431 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	114286364	114286884	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17936_PI429285431	1.7754358	A	0.9179728	A	1.81184934437715	0	lncRNA	19668-1_{1..481}	lnc-PLCXD3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLCXD3-1:2	chr5	 41294751	 41295231	-	lnc-PLCXD3-1	lnc-PLCXD3-1:2	XLOC_004799	linc-C6	NA	NA	NA	inter
CUST_50601_PI429285431	1.0557294	A	0.92099184	A	1.09789307838919	0	lncRNA	54289-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00003718 range=chr10:96857903-96880251 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003718 range=chr10:96857903-96880251 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 96857903	 96860902	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40286_PI429285431	1.0593388	A	1.4475116	A	0.764096734578679	0	lncRNA	41091-2_{3001..3294}	n408234|NR_028397|lncRNA|Homosapiens||RefGeneNoncode|NR_028397||9.8471300|-0.2297926	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408234|NR_028397|lncRNA|Homosapiens||RefGeneNoncode|NR_028397||9.8471300|-0.2297926	chr1	231667398	231667691	+	NA	NA	NA	NA	DISC1	NA	chr1:231762561-231964990	inter
CUST_51724_PI429285431	1.6960074	A	1.4257053	A	1.20606035000253	0	lncRNA	55281-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00011785 range=chr18:14224236-14256204 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011785 range=chr18:14224236-14256204 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr18	 14224236	 14227235	+	NA	NA	NA	NA	LOC100652806	NA	chr18:14234721-14249475	inter
CUST_15914_PI429285431	0.9253752	A	0.923529	A	1.00128050747524	0	lncRNA	17609-1_{1..1434}	lnc-SOX11-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOX11-3:1	chr2	  6120552	  6121985	+	lnc-SOX11-3	lnc-SOX11-3:1	XLOC_001327	linc-RSAD2-2	NA	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.40"	NA	inter
CUST_41708_PI429285431	1.2412835	A	1.3630873	A	0.919037859972726	0	lncRNA	43211-1_{1..86}	ENST00000408300 ncrna:miRNA chromosome:GRCh37:4:183090446:183090531:1 gene:ENSG00000221227 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408300 ncrna:miRNA chromosome:GRCh37:4:183090446:183090531:1 gene:ENSG00000221227 gene_biotype:miRNA transcript_biotype:miRNA	chr4	183090446	183090531	+	ENSG00000221227	ENST00000408300	NA	NA	NA	NA	NA	inter
CUST_50608_PI429285431	0.9194818	A	1.1266139	A	0.866257534120485	0	lncRNA	54294-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00002834 range=chr10:973603-982331 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00002834 range=chr10:973603-982331 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	   976603	   979602	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-52.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-53.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50"	NA	inner
CUST_49539_PI429285431	3.349616	P	3.0940025	A	1.19384331195192	0	lncRNA	53331-1_{1..1912}	hg19_lincRNAsTranscripts_TCONS_l2_00024253 range=chr6:52442244-52448786 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024253 range=chr6:52442244-52448786 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 52442244	 52444155	+	NA	NA	NA	NA	TRAM2	NA	chr6:52432244-52441862	inter
CUST_33972_PI429285431	0.894326	A	0.903196	A	0.993870646110437	0	lncRNA	35509-1_{1..644}	n340780|AF085961|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3243|NULL|-1.1249500|-0.3265112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340780|AF085961|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3243|NULL|-1.1249500|-0.3265112	chr17	 57440025	 57440668	+	NA	NA	NA	NA	YPEL2	NA	chr17:57430025-57450639	inner
CUST_24847_PI429285431	1.4549444	A	1.6086793	A	0.898920291021514	0	lncRNA	26387-1_{1..2835}	lnc-ZFP57-7:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZFP57-7:2	chr6	 29716677	 29719511	-	lnc-ZFP57-7	lnc-ZFP57-7:2	ENSG00000214922.3	HLA-F-AS1	NA	NA	NA	inter
CUST_11986_PI429285431	1.958514	A	1.9308292	A	1.01937494563798	0	lncRNA	13566-1_{1..888}	lnc-F13A1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-F13A1-3:4	chr6	  6711930	  6712817	-	lnc-F13A1-3	lnc-F13A1-3:4	XLOC_005595	linc-F13A1-1	NA	NA	NA	inter
LNCA_21_P0005807	2.224723	A	3.0743723	A	0.554919613226378	0	lncRNA	TCONS_00014948	NA	NA	NA	NA	XLOC_007020	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007020), lincRNA [TCONS_00014948]"	chr8:21266955-21223174	hs|8p21.3	Agilent_HUMAN_G3V2	TCONS_00014948	TCONS_00014948	chr8	 21223174	 21266955	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31744_PI429285431	0.921873	A	1.1495855	A	0.85398787998163	0	lncRNA	33486-1_{1..1843}	n338282|AK057344|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|675|NULL|-1.2036700|-0.2576544	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338282|AK057344|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|675|NULL|-1.2036700|-0.2576544	chr19	  6895004	  6896846	-	NA	NA	NA	NA	EMR1	"hg19_refFlat_EMR1:range=chr19:6887620-69400405'pad=0,hg19_refFlat_EMR1:range=chr19:6887620-69400405'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50chr19:6887582-6906843"	NA	inner
LNCA_21_P0004064	1.7298735	A	2.8419771	A	0.462618992134121	0	lncRNA	ENST00000506592	NA	NA	NA	NA	XLOC_004565	NA	ENST00000506592	NA	NA	"BROAD Institute lincRNA (XLOC_004565), lincRNA [TCONS_00009520]"	chr5:135148577-135162175	hs|5q31.1	Agilent_HUMAN_G3V2	ENST00000506592	ENST00000506592	chr5	135148577	135162175	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009052	0.90071654	A	0.9186797	A	0.987626080690772	0	lncRNA	TCONS_00024703	NA	NA	NA	NA	XLOC_011981	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011981), lincRNA [TCONS_00024703]"	chr16:66277999-66277940	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024703	TCONS_00024703	chr16	 66277940	 66277999	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005831	0.8921776	A	0.90741235	A	0.989495636245833	0	lncRNA	TCONS_00015002	NA	NA	NA	NA	XLOC_007082	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007082), lincRNA [TCONS_00015002]"	chr8:54190776-54190717	hs|8q11.23	Agilent_HUMAN_G3V2	TCONS_00015002	TCONS_00015002	chr8	 54190717	 54190776	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32850_PI429285431	0.8857135	A	1.8642229	A	0.507503824689093	0	lncRNA	34483-2_{3001..5038}	n339511|AL137447|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1952|NULL|-1.2487500|-0.3855686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339511|AL137447|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1952|NULL|-1.2487500|-0.3855686	chr3	124968119	124970156	-	NA	NA	NA	NA	ZNF148	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30chr3:124955119-124980132"	NA	inner
CUST_44754_PI429285431	3.1145334	A	0.8885588	A	4.67826829017945	0	lncRNA	49300-1_{1..1137}	"gi|224586781|ref|NR_027256.1| Homo sapiens triggering receptor expressed on myeloid cells-like 3, pseudogene (TREML3P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224586781|ref|NR_027256.1| Homo sapiens triggering receptor expressed on myeloid cells-like 3, pseudogene (TREML3P), non-coding RNA"	Chr6	 41176292	 41177428	-	340206	NR_027256.1	NA	NA	NA	NA	NA	inter
CUST_25545_PI429285431	6.0626154	P	5.6640253	P	1.31821902753391	0	lncRNA	27075-1_{1..578}	lnc-C2orf42-3:32	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:32	chr2	 70313256	 70313833	-	lnc-C2orf42-3	lnc-C2orf42-3:32	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_47586_PI429285431	1.313135	A	2.2753077	A	0.513283325822543	0	lncRNA	51589-2_{3001..6000}	"gi|224493659|ref|NR_027121.1| Homo sapiens shroom family member 4 (SHROOM4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224493659|ref|NR_027121.1| Homo sapiens shroom family member 4 (SHROOM4), transcript variant 2, non-coding RNA"	NW_004070877.1	   307757	   310756	-	57477	NR_027121.1	NA	NA	NA	"hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.67;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20"	NA	Unknown
CUST_10294_PI429285431	1.1805733	A	0.8921375	A	1.22131538401627	0	lncRNA	11821-1_{1..736}	lnc-ZPLD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZPLD1-2:1	chr3	102871138	102871873	+	lnc-ZPLD1-2	lnc-ZPLD1-2:1	XLOC_002743	linc-ALCAM-3	NA	NA	NA	inter
LNCA_21_P0004820	2.8325582	A	1.4546486	A	2.59891527046504	0	lncRNA	TCONS_00011643	NA	NA	NA	NA	XLOC_005127	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005127), lincRNA [TCONS_00011643]"	chr6:2399231-2434646	hs|6p25.2	Agilent_HUMAN_G3V2	TCONS_00011643	TCONS_00011643	chr6	  2399231	  2434646	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4211_PI429285431	5.5513206	P	5.7981606	P	0.842740287209304	0	lncRNA	4170-1_{1..433}	"transcript_id ""ENST00000537327.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537327.1"" | genecode_v17"	chr12	 28974908	 28975340	-	ENSG00000256513.1	ENST00000537327.1	RP11-977P2.1	RP11-977P2.1-001	NA	NA	NA	inter
CUST_7348_PI429285431	0.90193194	A	0.89199674	A	1.00691032272009	0	lncRNA	8995-1_{1..368}	lnc-CHAD-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CHAD-4:3	chr17	 48636689	 48637056	-	lnc-CHAD-4	lnc-CHAD-4:3	ENSG00000250107	RP11-94C24.10	SPATA20	NA	chr17:48626689-48633213	inter
CUST_29783_PI429285431	2.3646164	A	1.392349	A	1.96192161165548	0	lncRNA	31546-1_{1..821}	n333483|BC029294|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091723|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091723|-1.1952500|-0.1576884	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333483|BC029294|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091723|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091723|-1.1952500|-0.1576884	chr3	 15468544	 15469364	+	NA	NA	NA	NA	METTL6	NA	chr3:15458544-15469042	inner
CUST_20615_PI429285431	0.9914402	A	0.88060975	A	1.07984964509268	0	lncRNA	22254-1_{1..406}	lnc-C9orf66-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C9orf66-1:1	chr9	   272905	   273310	-	lnc-C9orf66-1	lnc-C9orf66-1:1	ENSG00000235880.1	RP11-59O6.3	DOCK8	NA	chr9:262905-283002	inner
LNCA_21_P0010365	6.4225945	P	6.8246794	P	0.756763860986649	0	lncRNA	ENST00000415702	NA	BC035864	NA	Hs.339290	XLOC_014265	NA	ENST00000415702	THC2613730	NA	"BROAD Institute lincRNA (XLOC_014265), lincRNA [TCONS_00029433]"	chr22:44840518-44840577	hs|22q13.31	Agilent_HUMAN_G3V2	ENST00000415702	ENST00000415702	chr22	 44840518	 44840577	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12405_PI429285431	0.8933131	A	0.90484405	A	0.992039210780784	0	lncRNA	14017-1_{1..489}	lnc-HDAC2-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HDAC2-2:6	chr6	113953502	113953990	-	lnc-HDAC2-2	lnc-HDAC2-2:6	XLOC_005810	linc-LAMA4-2	NA	NA	NA	inter
CUST_23173_PI429285431	0.91084313	A	0.88930476	A	1.01504125850332	0	lncRNA	24745-1_{1..527}	lnc-UBAP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBAP1-1:2	chr9	 34096599	 34097125	+	lnc-UBAP1-1	lnc-UBAP1-1:2	ENSG00000228352.1	RP11-537H15.3	DCAF12	NA	chr9:34086599-34106676	inner
CUST_32810_PI429285431	3.6392572	P	2.9060645	A	1.66231374271123	0	lncRNA	34445-1_{1..644}	n339457|BC039447|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1895|NULL|-1.3210800|-0.4189954	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339457|BC039447|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1895|NULL|-1.3210800|-0.4189954	chr21	 30923166	 30923809	-	NA	NA	NA	NA	GRIK1	NA	chr21:30913166-30933797	inner
CUST_20648_PI429285431	5.3436675	P	5.5441856	P	0.870237987695247	0	lncRNA	22287-1_{1..539}	lnc-CALM1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALM1-5:1	chr14	 91142210	 91142748	+	lnc-CALM1-5	lnc-CALM1-5:1	ENSG00000258437.1	RP11-661G16.1	TTC7B	NA	chr14:91132210-91152638	inner
CUST_29707_PI429285431	0.8809365	A	0.87765133	A	1.00227970089876	0	lncRNA	31469-1_{1..575}	n333373|BC002789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086165_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086165_10|-1.1979500|-0.4762784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333373|BC002789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086165_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086165_10|-1.1979500|-0.4762784	chr6	  1931749	  1932323	-	NA	NA	NA	NA	GMDS	NA	chr6:1921749-1943685	inner
LNCA_21_P0008273	8.162475	P	8.628028	P	0.724193433200978	0	lncRNA	BC038465	NA	BC038465	NA	Hs.650839	XLOC_010922	NA	NA	THC2604238	NA	"BROAD Institute lincRNA (XLOC_010922), lincRNA [TCONS_00022358]"	chr14:97930433-97930492	hs|14q32.2	Agilent_HUMAN_G3V2	BC038465	BC038465	chr14	 97930433	 97930492	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33878_PI429285431	8.691733	P	8.85045	P	0.895821377762445	0	lncRNA	35422-1_{1..1868}	n340667|AK093368|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3129|NULL|-0.1271580|-0.2410911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340667|AK093368|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3129|NULL|-0.1271580|-0.2410911	chr5	141227317	141229184	-	NA	NA	NA	NA	PCDH1	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70chr5:141232672-141239186"	NA	inter
CUST_19302_PI429285431	4.2944226	P	4.984868	P	0.619662513419418	0	lncRNA	20969-1_{1..3000}	lnc-IL34-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL34-2:1	chr16	 70802749	 70805748	+	lnc-IL34-2	lnc-IL34-2:1	ENSG00000214353.3	RP11-394B2.4	VAC14	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_VAC14:range=chr16:70721831-708348035'pad=0,hg19_refFlat_VAC14:range=chr16:70721831-708348035'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60chr16:70792749-70817154"	NA	inner
CUST_39576_PI429285431	4.4004874	P	4.066925	P	1.26012111215347	0	lncRNA	40519-1_{1..2266}	n387548|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011hkz.1||1.3874100|-0.2304819	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387548|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011hkz.1||1.3874100|-0.2304819	chr6	  1474836	  1477101	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.40;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.40"	NA	inter
CUST_36715_PI429285431	5.209265	P	5.180532	P	1.02011584863408	0	lncRNA	37894-1_{1..3000}	n345201|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_750|NULL|-1.3590900|-0.4616345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345201|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_750|NULL|-1.3590900|-0.4616345	chr13	 68222216	 68225215	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6344_PI429285431	1.1177969	A	1.034769	A	1.05923881890019	0	lncRNA	6268-1_{1..573}	"transcript_id ""ENST00000586698.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586698.1"" | genecode_v17"	chr19	 14416270	 14416842	-	ENSG00000266913.1	ENST00000586698.1	CTC-548K16.2	CTC-548K16.2-002	NA	NA	NA	inter
CUST_4954_PI429285431	12.646362	P	13.7389555	P	0.468917653884405	0	lncRNA	4898-1_{1..580}	"transcript_id ""ENST00000553537.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553537.1"" | genecode_v17"	chr14	 92719837	 92720416	-	ENSG00000258481.1	ENST00000553537.1	RP11-472N19.3	RP11-472N19.3-001	NA	NA	NA	inter
LNCA_21_P0003590	0.91361505	A	0.9498253	A	0.975213329241916	0	lncRNA	TCONS_00008022	NA	NA	NA	NA	XLOC_003486	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003486), lincRNA [TCONS_00008022]"	chr4:27932979-27933038	hs|4p15.1	Agilent_HUMAN_G3V2	TCONS_00008022	TCONS_00008022	chr4	 27932979	 27933038	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12536_PI429285431	0.9228708	A	1.0701885	A	0.902927651977112	0	lncRNA	14148-1_{1..443}	lnc-MYOM2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYOM2-4:1	chr8	  2662104	  2662546	+	lnc-MYOM2-4	lnc-MYOM2-4:1	XLOC_006690	linc-MCPH1-2	NA	NA	NA	inter
CUST_7319_PI429285431	4.043413	P	3.50483	P	1.45254514179217	0	lncRNA	8559-1_{1..293}	"transcript_id ""ENST00000517029.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517029.1"" | genecode_v17"	chr16	 23424905	 23425197	-	ENSG00000252838.1	ENST00000517029.1	RN7SKP23	RN7SKP23-201	COG7	NA	chr16:23414905-23435197	inner
CUST_14563_PI429285431	4.4725056	P	4.836806	P	0.776845496075456	0	lncRNA	16232-2_{3001..6000}	lnc-TOMM20-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TOMM20-2:3	chr1	235102514	235105513	-	lnc-TOMM20-2	lnc-TOMM20-2:3	XLOC_001265	linc-IRF2BP2-1	NA	"hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00"	NA	inter
CUST_32988_PI429285431	1.9096328	A	1.7128987	A	1.1461009308794	0	lncRNA	34603-2_{3001..4262}	n339668|BC035116|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2112|NULL|-1.1693200|-0.3990787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339668|BC035116|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2112|NULL|-1.1693200|-0.3990787	chr3	160795440	160796701	+	NA	NA	NA	NA	PPM1L	NA	chr3:160782440-160788817	inter
LNCA_21_P0006231	6.4145594	P	6.6311502	P	0.860596692051367	0	lncRNA	TCONS_00016184	NA	NA	NA	NA	XLOC_007585	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007585), lincRNA [TCONS_00016184]"	chr9:132174205-132174264	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_00016184	TCONS_00016184	chr9	132174205	132174264	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006717	0.8948215	A	0.9107132	A	0.98904515907769	0	lncRNA	ENST00000430326	NA	AK056146	NA	Hs.375763	XLOC_008666	NA	ENST00000430326	THC2518229	NA	"BROAD Institute lincRNA (XLOC_008666), lincRNA [TCONS_00017891]"	chr10:131584749-131584808	hs|10q26.3	Agilent_HUMAN_G3V2	ENST00000430326	ENST00000430326	chr10	131584749	131584808	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8237_PI429285431	4.3718863	P	4.664146	P	0.816621977492669	0	lncRNA	9827-1_{1..587}	lnc-DCTD-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DCTD-4:1	chr4	183066107	183066693	-	lnc-DCTD-4	lnc-DCTD-4:1	ENSG00000177822	AC108142.1	NA	NA	NA	inter
LNCA_21_P0004588	0.8918677	A	0.9069896	A	0.989573039263653	0	lncRNA	TCONS_00011109	NA	NA	NA	NA	XLOC_005111	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005111), lincRNA [TCONS_00011109]"	chr5:180262689-180262630	hs|5q35.3	Agilent_HUMAN_G3V2	TCONS_00011109	TCONS_00011109	chr5	180262630	180262689	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33670_PI429285431	1.0505426	A	0.9006178	A	1.10951163763483	0	lncRNA	35232-1_{1..1299}	n340436|CR591360|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2897|NULL|-0.9643320|-0.2564231	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340436|CR591360|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2897|NULL|-0.9643320|-0.2564231	chr5	 38758698	 38759996	-	NA	NA	NA	NA	OSMR	NA	chr5:38763915-38855880	inter
LNCA_21_P0003253	0.87612605	A	0.8785962	A	0.998289287431651	0	lncRNA	TCONS_00007002	NA	NA	NA	NA	XLOC_002863	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002863), lincRNA [TCONS_00007002]"	chr3:148673391-148673450	hs|3q24	Agilent_HUMAN_G3V2	TCONS_00007002	TCONS_00007002	chr3	148673391	148673450	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007890	8.688046	P	8.655996	P	1.02246396589663	0	lncRNA	ENST00000551629	NA	NA	NA	NA	XLOC_010191	NA	ENST00000551629	NA	NA	"BROAD Institute lincRNA (XLOC_010191), lincRNA [TCONS_00021404]"	chr12:108239742-108239308	hs|12q23.3	Agilent_HUMAN_G3V2	ENST00000551629	ENST00000551629	chr12	108239308	108239742	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49023_PI429285431	1.8109752	A	0.9072685	A	1.87086660968879	0	lncRNA	52852-1_{1..654}	hg19_lincRNAsTranscripts_TCONS_l2_00020480 range=chr4:37075393-37112587 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020480 range=chr4:37075393-37112587 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 37075393	 37076046	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20056_PI429285431	6.6366425	P	7.1041856	P	0.723195146150223	0	lncRNA	21707-1_{1..482}	lnc-ALX3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ALX3-1:3	chr1	110709453	110709934	-	lnc-ALX3-1	lnc-ALX3-1:3	ENSG00000227091.1	RP5-1028L10.1	SLC6A17	"hg19_refFlat_SLC6A17:range=chr1:110709552-1107410665'pad=0,hg19_refFlat_SLC6A17:range=chr1:110709552-1107410665'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.80chr1:110699453-110719805"	NA	inner
LNCA_21_P0001349	0.8751871	A	0.875927	A	0.999487271891108	0	lncRNA	TCONS_00001052	NA	NA	NA	NA	XLOC_000311	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000311), lincRNA [TCONS_00001052]"	chr1:96283040-96284225	hs|1p21.3	Agilent_HUMAN_G3V2	TCONS_00001052	TCONS_00001052	chr1	 96283040	 96284225	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012735	0.87507325	A	0.9301838	A	0.96252068479828	0	lncRNA	ENST00000508358	NA	NA	NA	NA	XLOC_l2_010772	NA	ENST00000508358	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010772), lincRNA [TCONS_l2_00020665]"	chr4:105478122-105478181	hs|4q24	Agilent_HUMAN_G3V2	ENST00000508358	ENST00000508358	chr4	105478122	105478181	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3354291	3.5371833	P	2.6467614	A	1.85371814362414	0	lncRNA	XR_109704	XR_109704	XR_109704	    85371	Hs.730361	KIAA1656	KIAA1656 protein	NA	THC2490584	NA	"PREDICTED: Homo sapiens KIAA1656 protein (KIAA1656), miscRNA [XR_109704]"	chr22:30770435-30770376	hs|22q12.2	Agilent_HUMAN_G3V2	XR_109704	XR_109704	chr22	 30770376	 30770435	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16039_PI429285431	0.8850326	A	2.2007518	A	0.40172518084287	0	lncRNA	17737-1_{1..677}	lnc-ZNF32-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ZNF32-3:2	chr10	 44407741	 44408417	-	lnc-ZNF32-3	lnc-ZNF32-3:2	XLOC_008792	linc-ZNF32-1	NA	NA	NA	inter
CUST_47890_PI429285431	4.602516	P	4.9479427	P	0.787075152147865	0	lncRNA	51785-1_{1..3000}	"gi|410171765|ref|XR_171364.1| PREDICTED: Homo sapiens uncharacterized LOC100133039 (LOC100133039), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171765|ref|XR_171364.1| PREDICTED: Homo sapiens uncharacterized LOC100133039 (LOC100133039), misc_RNA"	NA	NA	NA	NA	NA	XR_171364.1	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-61.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00"	NA	Unknown
LNCA_21_P0007536	6.3268676	P	6.5136147	P	0.878584467893041	0	lncRNA	TCONS_00020359	NA	NA	NA	NA	XLOC_009690	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009690), lincRNA [TCONS_00020359]"	chr12:24927128-24927187	hs|12p12.1	Agilent_HUMAN_G3V2	TCONS_00020359	TCONS_00020359	chr12	 24927128	 24927187	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20882_PI429285431	2.4700575	A	0.90362096	A	2.96172263762686	0	lncRNA	22514-1_{1..694}	lnc-IQSEC3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IQSEC3-2:1	chr12	   313806	   314499	+	lnc-IQSEC3-2	lnc-IQSEC3-2:1	ENSG00000256577.1	RP11-283I3.2	SLC6A12	"hg19_refFlat_SLC6A12:range=chr12:300234-3191525'pad=0,hg19_refFlat_SLC6A12:range=chr12:300234-3191525'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20chr12:303806-323371"	NA	inner
CUST_29859_PI429285431	8.669735	P	7.452006	P	2.32580315648318	0	lncRNA	31622-1_{1..247}	n333781|L17329|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192308|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192308|-1.3871500|-0.3295578	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333781|L17329|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192308|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192308|-1.3871500|-0.3295578	chr20	 54941963	 54942209	+	NA	NA	NA	NA	C20orf108	NA	chr20:54933983-54943719	inner
LNCA_21_P0012210	3.2511	P	0.87160844	A	5.20353324986975	0	lncRNA	ENST00000427446	NA	NA	NA	NA	XLOC_l2_008977	NA	ENST00000427446	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008977), lincRNA [TCONS_l2_00017319]"	chr21:14930687-14930746	hs|21q11.2	Agilent_HUMAN_G3V2	ENST00000427446	ENST00000427446	chr21	 14930687	 14930746	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45932_PI429285431	9.307355	P	9.773957	P	0.723667055296268	0	lncRNA	50238-1_{1..3000}	"gi|367145070|ref|NR_045767.1| Homo sapiens chromosome 11 open reading frame 45 (C11orf45), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|367145070|ref|NR_045767.1| Homo sapiens chromosome 11 open reading frame 45 (C11orf45), transcript variant 3, non-coding RNA"	Chr11	128769460	128772459	-	219833	NR_045767.1	NA	NA	NA	NA	NA	inter
LNCA_33_P3292694	6.1931114	P	6.148205	P	1.03161624733695	0	lncRNA	XR_110489	XR_110489	XR_110489	   643355	Hs.279714	LOC643355	uncharacterized LOC643355	NA	THC2608956	NA	"PREDICTED: Homo sapiens hypothetical LOC643355 (LOC643355), miscRNA [XR_110489]"	chr1:112533422-112533481	hs|1p13.2	Agilent_HUMAN_G3V2	XR_110489	XR_110489	chr1	112533422	112533481	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25991_PI429285431	10.483484	P	10.780981	P	0.813662834698076	0	lncRNA	27510-1_{1..540}	lnc-RP11-1105G2.3.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-1105G2.3.1-3:1	chr12	 94337321	 94337860	-	lnc-RP11-1105G2.3.1-3	lnc-RP11-1105G2.3.1-3:1	ENSG00000257283.1	RP11-1060G2.1	NA	NA	NA	inter
LNCA_21_P0007026	1.4270564	A	2.7921488	A	0.388209573123599	0	lncRNA	TCONS_00018621	NA	NA	NA	NA	XLOC_008974	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008974), lincRNA [TCONS_00018621]"	chr10:124103040-124102981	hs|10q26.13	Agilent_HUMAN_G3V2	TCONS_00018621	TCONS_00018621	chr10	124102981	124103040	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_385_PI429285431	3.6251435	P	3.7973993	P	0.887453971474261	0	lncRNA	377-1_{1..408}	"transcript_id ""ENST00000429055.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429055.1"" | genecode_v17"	chr1	121139338	121139745	-	ENSG00000230806.1	ENST00000429055.1	RP11-343N15.1	RP11-343N15.1-001	NA	NA	NA	inter
LNCA_21_P0006071	7.834629	P	7.9264507	P	0.938337156680911	0	lncRNA	ENST00000420315	NA	NA	NA	NA	XLOC_007669	NA	ENST00000420315	THC2720504	NA	"BROAD Institute lincRNA (XLOC_007669), lincRNA [TCONS_00015799]"	chr9:33514680-33514323	hs|9p13.3	Agilent_HUMAN_G3V2	ENST00000420315	ENST00000420315	chr9	 33514323	 33514680	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34091_PI429285431	4.726619	P	4.933152	P	0.866617334802414	0	lncRNA	35618-1_{1..1011}	n340914|BC033347|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3379|NULL|-1.0047500|-0.1400886	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340914|BC033347|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3379|NULL|-1.0047500|-0.1400886	chr17	 78427534	 78428544	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42845_PI429285431	0.89117515	A	0.9260198	A	0.976136865939572	0	lncRNA	45886-1_{1..68}	ENST00000517064 ncrna:snoRNA chromosome:GRCh37:14:101383915:101383982:1 gene:ENSG00000252873 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517064 ncrna:snoRNA chromosome:GRCh37:14:101383915:101383982:1 gene:ENSG00000252873 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101383915	101383982	+	ENSG00000252873	ENST00000517064	NA	NA	NA	NA	NA	inter
LNCA_21_P0001481	5.6936765	P	5.3275332	P	1.28890264823765	0	lncRNA	XR_108375	XR_108375	XR_108375	NA	NA	LOC100506985	uncharacterized LOC100506985	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506985, transcript variant 2 (LOC100506985), miscRNA [XR_108375]"	chr1:24865283-24865224	hs|1p36.11	Agilent_HUMAN_G3V2	XR_108375	XR_108375	chr1	 24865224	 24865283	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014685	1.8304255	A	0.892578	A	1.91566793016936	0	lncRNA	XR_111582	XR_111582	XR_111582	NA	Hs.434720	LOC388282	uncharacterized LOC388282	NA	THC2601668	NA	"PREDICTED: Homo sapiens hypothetical LOC388282 (LOC388282), miscRNA [XR_111582]"	chr16:57844644-57847580	hs|16q21	Agilent_HUMAN_G3V2	XR_111582	XR_111582	chr16	 57844644	 57847580	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007673	0.86985177	A	0.8689591	A	1.00061894315999	0	lncRNA	TCONS_00020661	NA	NA	NA	NA	XLOC_009962	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009962), lincRNA [TCONS_00020661]"	chr12:132674574-132674633	hs|12q24.33	Agilent_HUMAN_G3V2	TCONS_00020661	TCONS_00020661	chr12	132674574	132674633	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39213_PI429285431	9.30307	P	9.429987	P	0.915786371206121	0	lncRNA	40188-1_{1..230}	n386024|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009yzs.1||-0.9734510|-0.0790848	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386024|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009yzs.1||-0.9734510|-0.0790848	chr11	117886486	117886715	-	NA	NA	NA	NA	TMPRSS4	NA	chr11:117947727-117967508	inner
LNCA_21_P0001501	0.9087125	A	0.93973804	A	0.978724323907926	0	lncRNA	TCONS_00001490	NA	NA	NA	NA	XLOC_000830	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000830), lincRNA [TCONS_00001490]"	chr1:50719537-50717182	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_00001490	TCONS_00001490	chr1	 50717182	 50719537	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36759_PI429285431	1.4424047	A	1.9282885	A	0.714059500522332	0	lncRNA	37932-1_{1..856}	n345239|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_788|NULL|-1.3114800|-0.2701380	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345239|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_788|NULL|-1.3114800|-0.2701380	chr13	112240243	112241098	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4742_PI429285431	0.8968611	A	0.89669013	A	1.00011851439574	0	lncRNA	4686-1_{1..469}	"transcript_id ""ENST00000532213.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000532213.2"" | genecode_v17"	chr14	 21492455	 21492923	+	ENSG00000258604.1	ENST00000532213.2	AL161668.5	AL161668.5-002	RNASE13	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40chr14:21500979-21502944"	NA	inner
LNCA_21_P0013272	0.9129945	A	0.946031	A	0.977361038988734	0	lncRNA	TCONS_l2_00026236	NA	NA	NA	NA	XLOC_l2_013621	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013621), lincRNA [TCONS_l2_00026236]"	chr7:136850286-136850345	hs|7q33	Agilent_HUMAN_G3V2	TCONS_l2_00026236	TCONS_l2_00026236	chr7	136850286	136850345	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004364	0.91228867	A	2.2802796	A	0.387430401186782	0	lncRNA	TCONS_00010272	NA	NA	NA	NA	XLOC_004737	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004737), lincRNA [TCONS_00010272]"	chr5:12862031-12861972	hs|5p15.2	Agilent_HUMAN_G3V2	TCONS_00010272	TCONS_00010272	chr5	 12861972	 12862031	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26041_PI429285431	2.6693153	A	3.0156302	A	0.786590735844366	0	lncRNA	27556-3_{6001..7315}	lnc-ZNF862-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF862-1:1	chr7	149498627	149499941	+	lnc-ZNF862-1	lnc-ZNF862-1:1	ENSG00000197558.7	SSPO	SSPO	NA	chr7:149482627-149503165	inner
CUST_48493_PI429285431	1.7542323	A	0.9007701	A	1.80683178703408	0	lncRNA	52346-1_{1..1946}	hg19_lincRNAsTranscripts_TCONS_l2_00001893 range=chr1:243244004-243251533 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001893 range=chr1:243244004-243251533 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	243244004	243245949	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-20.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30"	NA	inter
CUST_33927_PI429285431	0.90950423	A	0.92416996	A	0.989885984754513	0	lncRNA	35468-1_{1..1365}	n340725|AK098553|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3188|NULL|-0.8337170|-0.2734856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340725|AK098553|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3188|NULL|-0.8337170|-0.2734856	chr5	168581857	168583221	-	NA	NA	NA	NA	SLIT3	NA	chr5:168571857-168593220	inner
CUST_50753_PI429285431	2.533194	A	2.7217345	A	0.877492986737175	0	lncRNA	54417-1_{1..688}	hg19_lincRNAsTranscripts_TCONS_l2_00003340 range=chr10:135451047-135465409 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003340 range=chr10:135451047-135465409 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	135451047	135451734	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.40"	NA	inter
CUST_285_PI429201921	4.598347	P	4.350952	P	1.1870617625309	0	lncRNA	202-2_{3001..6000}	TC07002965.hg.1	 TCONS_l2_00026593-XLOC_l2_013846 // Broad TUCP // linc-LOC389493-9 chr7:-:56947711-56950089 // chr7 // 100 // 100 // 0 // --- // 0///TCONS_l2_00027366-XLOC_l2_013846 // Broad TUCP // linc-LOC389493-9 chr7:-:56943077-56949839 // chr7 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr7:-:56943077-56949839	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00027366-XLOC_l2_013846	linc-LOC389493-9	chr7	 56943077	 56949839	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5334_PI429285431	1.1915747	A	2.1679397	A	0.508258731569229	0	lncRNA	5272-1_{1..648}	"transcript_id ""ENST00000560391.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560391.1"" | genecode_v17"	chr15	 95143243	 95143890	+	ENSG00000259331.1	ENST00000560391.1	RP11-57P19.1	RP11-57P19.1-001	NA	NA	NA	inter
CUST_30332_PI429285431	7.1152034	P	6.743572	P	1.29381505020284	0	lncRNA	32108-1_{1..299}	n335248|AY562996|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255507|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255507|1.0323900|-0.2409449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335248|AY562996|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255507|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255507|1.0323900|-0.2409449	chr8	 90770369	 90770667	+	NA	NA	NA	NA	RIPK2	NA	chr8:90769975-90792052	inner
CUST_27180_PI429285431	1.5349624	A	1.660458	A	0.916689084644661	0	lncRNA	28720-1_{1..1035}	n324309|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043040|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043040|-1.0428900|-0.3335466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324309|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043040|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043040|-1.0428900|-0.3335466	chr6	166433142	166434176	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008612	3.7485847	P	3.6191895	P	1.09383505261586	0	lncRNA	TCONS_00023352	NA	NA	NA	NA	XLOC_011213	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011213), lincRNA [TCONS_00023352]"	chr15:38286939-38286998	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00023352	TCONS_00023352	chr15	 38286939	 38286998	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7872_PI429285431	0.9044041	A	1.0480552	A	0.905225355254602	0	lncRNA	9493-2_{3001..3352}	lnc-TMPRSS11E-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMPRSS11E-1:3	chr4	 68948839	 68949190	+	lnc-TMPRSS11E-1	lnc-TMPRSS11E-1:3	ENSG00000248049	RP11-453E17.1	TMPRSS11F	"hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_SYT14:range=chr1:210187031-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210187031-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_SYT14:range=chr1:210111610-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111610-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80chr4:68935839-68956670"	NA	inner
CUST_22163_PI429285431	0.8967074	A	0.8944425	A	1.00157114200158	0	lncRNA	23765-1_{1..527}	lnc-GS1-211B7.1.1-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GS1-211B7.1.1-1:12	chr8	 30623743	 30624269	+	lnc-GS1-211B7.1.1-1	lnc-GS1-211B7.1.1-1:12	ENSG00000104691.10	UBXN8	UBXN8	NA	chr8:30613743-30624522	inner
CUST_19112_PI429285431	0.9060812	A	0.9169024	A	0.992527375661926	0	lncRNA	20796-4_{9001..12000}	lnc-EGLN1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-EGLN1-3:1	NA	     9000	    11999	NA	NA	NA	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_DISC1:range=chr1:231762614-2321446375'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321446375'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2319542715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319542715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_DISC1:range=chr1:231762614-2320946385'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2320946385'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_DISC1:range=chr1:231762614-2320023245'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2320023245'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_DISC1:range=chr1:231762614-2321449005'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321449005'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_DISC1:range=chr1:231762614-2319541255'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319541255'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50"	NA	Unknown
CUST_47310_PI429285431	8.122987	P	8.194874	P	0.951392791854658	0	lncRNA	51371-2_{3001..5941}	"gi|386781521|ref|NR_048540.1| Homo sapiens solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 (SLC9A8), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386781521|ref|NR_048540.1| Homo sapiens solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 (SLC9A8), transcript variant 6, non-coding RNA"	Chr20	 48432250	 48435190	+	23315	NR_048540.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014661	0.8789172	A	1.8970772	A	0.493745669539137	0	lncRNA	XR_110943	XR_110943	XR_110943	NA	NA	LOC100507327	uncharacterized LOC100507327	NA	THC2500521	NA	"PREDICTED: Homo sapiens hypothetical LOC100507327 (LOC100507327), miscRNA [XR_110943]"	chrUn_gl000219:56979-57038	NA	Agilent_HUMAN_G3V2	XR_110943	XR_110943	chrUn_gl000219	    56979	    57038	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15442_PI429285431	4.8326664	P	4.713918	P	1.08579248212793	0	lncRNA	17130-1_{1..1616}	lnc-HRH3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HRH3-1:1	chr20	 60812443	 60814058	-	lnc-HRH3-1	lnc-HRH3-1:1	XLOC_013832	linc-HRH3-3	OSBPL2	NA	chr20:60813580-60822575	inter
CUST_42435_PI429285431	4.429921	P	4.865022	P	0.739641972056344	0	lncRNA	45158-1_{1..135}	ENST00000516624 ncrna:snoRNA chromosome:GRCh37:1:67568328:67568462:-1 gene:ENSG00000252433 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516624 ncrna:snoRNA chromosome:GRCh37:1:67568328:67568462:-1 gene:ENSG00000252433 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 67568328	 67568462	-	ENSG00000252433	ENST00000516624	NA	NA	C1orf141	NA	chr1:67558328-67578462	inner
CUST_50219_PI429285431	1.2559639	A	0.9166337	A	1.26516907757343	0	lncRNA	53943-1_{1..357}	hg19_lincRNAsTranscripts_TCONS_l2_00028764 range=chr9:67038559-67094960 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028764 range=chr9:67038559-67094960 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 67038559	 67038915	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50712_PI429285431	1.2124008	A	0.89188385	A	1.24877793389282	0	lncRNA	54382-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00003131 range=chr10:82003045-82009394 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003131 range=chr10:82003045-82009394 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 82006045	 82009044	+	NA	NA	NA	NA	NA	"hg19_refFlat_EIF5A:range=chr17:7210366-72149595'pad=0,hg19_refFlat_EIF5A:range=chr17:7210366-72149595'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_EIF5AL1:range=chr10:81272406-812728705'pad=0,hg19_refFlat_EIF5AL1:range=chr10:81272406-812728705'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.90;hg19_refFlat_EIF5A:range=chr17:7212955-72149595'pad=0,hg19_refFlat_EIF5A:range=chr17:7212955-72149595'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10"	NA	inter
LNCA_21_P0003033	3.8415904	P	2.9264026	P	1.88581453807185	0	lncRNA	TCONS_00006230	NA	NA	NA	NA	XLOC_002821	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002821), lincRNA [TCONS_00006230]"	chr3:129872250-129872309	hs|3q22.1	Agilent_HUMAN_G3V2	TCONS_00006230	TCONS_00006230	chr3	129872250	129872309	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009224	3.2950585	P	0.87036145	A	5.36916242801712	0	lncRNA	TCONS_00025312	NA	NA	NA	NA	XLOC_012115	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012115), lincRNA [TCONS_00025312]"	chr17:14114817-14114876	hs|17p12	Agilent_HUMAN_G3V2	TCONS_00025312	TCONS_00025312	chr17	 14114817	 14114876	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29813_PI429285431	3.5530186	P	3.8164055	P	0.83312974959063	0	lncRNA	31576-1_{1..1767}	n333529|BC042111|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000097132|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000097132|4.0607600|-0.0352437	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333529|BC042111|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000097132|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000097132|4.0607600|-0.0352437	chr19	 49232460	 49234226	-	NA	NA	NA	NA	RASIP1	NA	chr19:49223842-49243970	inner
CUST_42117_PI429285431	6.1430187	P	6.3381634	P	0.873485282349371	0	lncRNA	44088-1_{1..83}	ENST00000410589 ncrna:miRNA chromosome:GRCh37:15:82336635:82336717:1 gene:ENSG00000222521 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410589 ncrna:miRNA chromosome:GRCh37:15:82336635:82336717:1 gene:ENSG00000222521 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 82336635	 82336717	+	ENSG00000222521	ENST00000410589	NA	NA	MEX3B	"hg19_refFlat_MEX3D:range=chr19:1555562-15680575'pad=0,hg19_refFlat_MEX3D:range=chr19:1555562-15680575'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_MEX3A:range=chr1:156046365-1560517895'pad=0,hg19_refFlat_MEX3A:range=chr1:156046365-1560517895'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20;hg19_refFlat_MEX3D:range=chr19:1555330-15680575'pad=0,hg19_refFlat_MEX3D:range=chr19:1555330-15680575'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_MEX3B:range=chr15:82335501-823380465'pad=0,hg19_refFlat_MEX3B:range=chr15:82335501-823380465'pad=0 3'pad=0 strand=- repeatMasking=none,-103.30chr15:82334128-82338361"	NA	inner
LNCA_21_P0008625	4.570727	P	4.783867	P	0.862657627662417	0	lncRNA	TCONS_00023380	NA	NA	NA	NA	XLOC_011224	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011224), lincRNA [TCONS_00023380]"	chr15:41244757-41244816	hs|15q15.1	Agilent_HUMAN_G3V2	TCONS_00023380	TCONS_00023380	chr15	 41244757	 41244816	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005564	0.8760245	A	3.0725026	P	0.218169585783167	0	lncRNA	TCONS_00014152	NA	NA	NA	NA	XLOC_006124	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006124), lincRNA [TCONS_00014152]"	chr7:63849447-63849506	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_00014152	TCONS_00014152	chr7	 63849447	 63849506	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002533	0.87621653	A	0.87208533	A	1.00286763344951	0	lncRNA	TCONS_00004557	NA	NA	NA	NA	XLOC_002462	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002462), lincRNA [TCONS_00004557]"	chr2:202922249-202922190	hs|2q33.1	Agilent_HUMAN_G3V2	TCONS_00004557	TCONS_00004557	chr2	202922190	202922249	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12172_PI429285431	0.8785584	A	0.873718	A	1.00336074429293	0	lncRNA	13771-1_{1..241}	lnc-MARCKS-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MARCKS-1:3	chr6	114241620	114241860	+	lnc-MARCKS-1	lnc-MARCKS-1:3	XLOC_005438	linc-NT5DC1-5	NA	NA	NA	inter
CUST_8477_PI429285431	6.3658323	P	6.5877013	P	0.857453891868339	0	lncRNA	10042-1_{1..3000}	lnc-CPM-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPM-3:1	chr12	 69051445	 69054444	-	lnc-CPM-3	lnc-CPM-3:1	ENSG00000245302	ENST00000501412	RAP1B	NA	chr12:69041445-69054374	inner
CUST_40633_PI429285431	2.3404498	A	3.3636122	P	0.492036620762861	0	lncRNA	41374-1_{1..3000}	n410131|NR_036573|lncRNA|Homosapiens||RefGeneNoncode|NR_036573||1.9365100|-0.1251005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410131|NR_036573|lncRNA|Homosapiens||RefGeneNoncode|NR_036573||1.9365100|-0.1251005	chr7	148982371	148985370	+	NA	NA	NA	NA	ZNF783	NA	chr7:148972371-148982085	inter
CUST_10963_PI429285431	1.6346914	A	2.0399923	A	0.755078791093873	0	lncRNA	12505-1_{1..306}	lnc-ITPR3-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITPR3-1:5	chr6	 33882503	 33882808	+	lnc-ITPR3-1	lnc-ITPR3-1:5	XLOC_005263	linc-HMGA1-2	NA	NA	NA	inter
LNCA_21_P0013818	7.2979956	P	7.717411	P	0.747727552492111	0	lncRNA	TCONS_l2_00030522	NA	NA	NA	NA	XLOC_l2_015752	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015752), lincRNA [TCONS_l2_00030522]"	chrX:70888332-70886008	hs|Xq13.1	Agilent_HUMAN_G3V2	TCONS_l2_00030522	TCONS_l2_00030522	chrX	 70886008	 70888332	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012602	4.355233	P	5.312495	P	0.515033435895382	0	lncRNA	TCONS_l2_00020652	NA	NA	NA	NA	XLOC_l2_010759	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010759), lincRNA [TCONS_l2_00020652]"	chr4:100574899-100574958	hs|4q23	Agilent_HUMAN_G3V2	TCONS_l2_00020652	TCONS_l2_00020652	chr4	100574899	100574958	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16653_PI429285431	4.385872	P	4.080269	P	1.23593511020187	0	lncRNA	18355-1_{1..392}	lnc-BSND-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BSND-1:1	chr1	 55462535	 55462926	+	lnc-BSND-1	lnc-BSND-1:1	XLOC_000205	linc-BSND	BSND	NA	chr1:55464617-55472838	inter
CUST_8449_PI429285431	4.4464016	P	5.1452284	P	0.616072993751	0	lncRNA	10018-1_{1..2114}	lnc-WNT1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WNT1-2:2	chr12	 49411186	 49413299	+	lnc-WNT1-2	lnc-WNT1-2:2	ENSG00000245406	ENSG00000257913.1	MLL2	"hg19_refFlat_DDN:range=chr12:49390523-493930705'pad=0,hg19_refFlat_DDN:range=chr12:49390523-493930705'pad=0 3'pad=0 strand=- repeatMasking=none,-110.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00chr12:49412758-49422980"	NA	inner
CUST_13482_PI429285431	0.899928	A	0.90941143	A	0.993448144849595	0	lncRNA	15120-1_{1..618}	lnc-PTCD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTCD2-1:1	chr5	 71867423	 71868040	+	lnc-PTCD2-1	lnc-PTCD2-1:1	XLOC_004421	linc-TNPO1-2	LOC389300	NA	chr5:71869991-71877520	inter
CUST_26943_PI429285431	1.0929626	A	2.3788905	A	0.410106950554988	0	lncRNA	28464-1_{1..691}	n324024|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053139|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053139|-0.8898320|-0.2758669	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324024|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053139|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053139|-0.8898320|-0.2758669	chr9	 95237434	 95238124	-	NA	NA	NA	NA	CENPP	NA	chr9:95227434-95249224	inner
CUST_47048_PI429285431	0.9153125	A	0.915497	A	0.999872122522208	0	lncRNA	51136-2_{3001..3764}	"gi|239835758|ref|NR_027300.2| Homo sapiens complement component 3 precursor pseudogene (C3P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239835758|ref|NR_027300.2| Homo sapiens complement component 3 precursor pseudogene (C3P1), non-coding RNA"	Chr19	 10155032	 10155795	+	388503	NR_027300.2	NA	NA	NA	NA	NA	inter
CUST_12090_PI429285431	7.0452437	P	6.9827275	P	1.04428550862718	0	lncRNA	13684-1_{1..358}	lnc-C1QTNF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1QTNF1-1:1	chr17	 76987188	 76987545	+	lnc-C1QTNF1-1	lnc-C1QTNF1-1:1	XLOC_012332	linc-C1QTNF1-1	CANT1	NA	chr17:76987798-76997493	inter
LNCA_21_P0001314	2.973565	A	0.92873466	A	4.126247444652	0	lncRNA	TCONS_00000968	NA	NA	NA	NA	XLOC_000227	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000227), lincRNA [TCONS_00000968]"	chr1:62102938-62113744	hs|1p31.3	Agilent_HUMAN_G3V2	TCONS_00000968	TCONS_00000968	chr1	 62102938	 62113744	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42929_PI429285431	0.91906524	A	0.9141547	A	1.00340952621245	0	lncRNA	46039-1_{1..107}	ENST00000516884 ncrna:snoRNA chromosome:GRCh37:X:123331593:123331699:1 gene:ENSG00000252693 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516884 ncrna:snoRNA chromosome:GRCh37:X:123331593:123331699:1 gene:ENSG00000252693 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	123331593	123331699	+	ENSG00000252693	ENST00000516884	NA	NA	NA	NA	NA	inter
CUST_18824_PI429285431	1.3680301	A	1.3558527	A	1.00847645388185	0	lncRNA	20518-1_{1..457}	lnc-CHADL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CHADL-2:1	chr22	 41593278	 41593734	-	lnc-CHADL-2	lnc-CHADL-2:1	ENSG00000231993	RP1-85F18.5	L3MBTL2	NA	chr22:41585755-41603460	inter
CUST_26855_PI429285431	0.91118306	A	0.9249403	A	0.990509529374195	0	lncRNA	28369-1_{1..445}	n323927|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055605|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055605|-0.2320860|-0.1784928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323927|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055605|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055605|-0.2320860|-0.1784928	chrX	  1811476	  1811920	+	NA	NA	NA	NA	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70"	NA	inter
LNCA_21_P0004576	1.1399857	A	0.91072214	A	1.17223641514493	0	lncRNA	TCONS_00011070	NA	NA	NA	NA	XLOC_005053	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005053), lincRNA [TCONS_00011070]"	chr5:150554885-150554826	hs|5q33.1	Agilent_HUMAN_G3V2	TCONS_00011070	TCONS_00011070	chr5	150554826	150554885	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10292_PI429285431	3.3111122	P	3.76312	P	0.731024771868808	0	lncRNA	11818-1_{1..666}	lnc-FAM43A-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM43A-6:1	chr3	194566750	194567415	+	lnc-FAM43A-6	lnc-FAM43A-6:1	XLOC_002987	linc-MUC20-10	NA	NA	NA	inter
CUST_34255_PI429285431	4.4855385	P	4.428969	P	1.03998988737767	0	lncRNA	35758-1_{1..3000}	n341114|CR627226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3580|NULL|18.3601000|-0.3329892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341114|CR627226|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3580|NULL|18.3601000|-0.3329892	chr11	108380805	108383804	-	NA	NA	NA	NA	EXPH5	NA	chr11:108376158-108432932	inner
CUST_39367_PI429285431	5.6921134	P	5.776452	P	0.943216852264017	0	lncRNA	40331-1_{1..2547}	n386477|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mak.1||2.9129100|-0.4017307	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386477|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mak.1||2.9129100|-0.4017307	chr8	 89044243	 89046789	-	NA	NA	NA	NA	MMP16	NA	chr8:89049460-89056790	inter
CUST_41461_PI429285431	4.9718404	P	4.3433366	P	1.54596086625097	0	lncRNA	42651-1_{1..104}	ENST00000390783 ncrna:miRNA chromosome:GRCh37:10:20072486:20072589:-1 gene:ENSG00000212072 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390783 ncrna:miRNA chromosome:GRCh37:10:20072486:20072589:-1 gene:ENSG00000212072 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 20072486	 20072589	-	ENSG00000212072	ENST00000390783	NA	NA	PLXDC2	NA	chr10:20062486-20082589	inter
CUST_35443_PI429285431	0.89619213	A	0.89061534	A	1.00387301708641	0	lncRNA	36850-1_{1..338}	n342510|X64984|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5005|NULL|1.7108100|-0.2339393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342510|X64984|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5005|NULL|1.7108100|-0.2339393	chr3	 98188794	 98189131	+	NA	NA	NA	NA	OR5K1	NA	chr3:98178794-98189372	inner
CUST_49723_PI429285431	0.894632	A	0.9066636	A	0.991695008957461	0	lncRNA	53497-2_{3001..3869}	hg19_lincRNAsTranscripts_TCONS_00040338_HOTTIP range=chr7:27240241-27247033 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00040338_HOTTIP range=chr7:27240241-27247033 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 27243241	 27244109	+	NA	NA	NA	NA	HOXA13	NA	chr7:27236499-27239725	inter
CUST_35074_PI429285431	3.171516	P	3.5719173	P	0.757647506738899	0	lncRNA	36484-1_{1..459}	n342028|BC038547|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4509|NULL|-1.0899800|-0.1620852	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342028|BC038547|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4509|NULL|-1.0899800|-0.1620852	chr12	116971239	116971697	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22258_PI429285431	0.912316	A	0.9220426	A	0.993280710693046	0	lncRNA	23859-1_{1..435}	lnc-C13orf35-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C13orf35-1:1	chr13	113371636	113372070	+	lnc-C13orf35-1	lnc-C13orf35-1:1	ENSG00000237030.1	RP11-144L2.1	ATP11A	NA	chr13:113361636-113381989	inner
CUST_22780_PI429285431	3.145663	P	2.6444314	A	1.41542136376723	0	lncRNA	24360-1_{1..843}	lnc-PHF14-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHF14-1:3	chr7	 11423424	 11424266	+	lnc-PHF14-1	lnc-PHF14-1:3	ENSG00000230333.1	AC004538.3	THSD7A	NA	chr7:11413424-11434045	inner
LNCA_21_P0001477	4.848611	P	5.3522263	P	0.705337035912943	0	lncRNA	TCONS_00001417	NA	NA	NA	NA	XLOC_000736	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000736), lincRNA [TCONS_00001417]"	chr1:23877812-23877753	hs|1p36.12	Agilent_HUMAN_G3V2	TCONS_00001417	TCONS_00001417	chr1	 23877753	 23877812	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1805_PI429285431	3.2910175	P	3.650391	P	0.779503010583968	0	lncRNA	1792-1_{1..473}	"transcript_id ""ENST00000510744.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510744.1"" | genecode_v17"	chr4	 76286417	 76286889	-	ENSG00000248646.1	ENST00000510744.1	RP11-567N4.2	RP11-567N4.2-001	NA	NA	NA	inter
CUST_2758_PI429285431	0.89815456	A	0.9028217	A	0.996770212090509	0	lncRNA	2741-1_{1..1050}	"transcript_id ""ENST00000418534.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418534.2"" | genecode_v17"	chr7	  7778165	  7779214	-	ENSG00000234718.5	ENST00000418534.2	AC007161.5	AC007161.5-002	NA	NA	NA	inter
LNCA_21_P0013525	1.1879582	A	1.0877535	A	1.07192554429076	0	lncRNA	ENST00000521148	NA	NA	NA	NA	XLOC_l2_014589	NA	ENST00000521148	THC2691284	NA	"BROAD Institute lincRNA (XLOC_l2_014589), lincRNA [TCONS_l2_00028326]"	chr8:93712169-93712110	hs|8q22.1	Agilent_HUMAN_G3V2	ENST00000521148	ENST00000521148	chr8	 93712110	 93712169	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16037_PI429285431	1.918694	A	1.2670159	A	1.57099446753558	0	lncRNA	17735-1_{1..1464}	lnc-AC131097.4.1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC131097.4.1-3:4	chr2	243026247	243027710	-	lnc-AC131097.4.1-3	lnc-AC131097.4.1-3:4	XLOC_002560	linc-PDCD1-4	NA	NA	NA	inter
CUST_15981_PI429285431	1.8715538	A	1.1416341	A	1.65854677481297	0	lncRNA	17680-1_{1..714}	lnc-BLCAP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BLCAP-1:2	chr20	 36137506	 36138219	-	lnc-BLCAP-1	lnc-BLCAP-1:2	XLOC_013732	linc-GHRH	BLCAP	NA	chr20:36145819-36147633	inter
CUST_16502_PI429285431	1.6834904	A	1.7852312	A	0.931907844322339	0	lncRNA	18200-1_{1..860}	lnc-CD83-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD83-3:2	chr6	 14502138	 14502997	+	lnc-CD83-3	lnc-CD83-3:2	XLOC_005181	linc-JARID2-3	NA	NA	NA	inter
CUST_37201_PI429285431	1.2739077	A	0.98542565	A	1.22135453764218	0	lncRNA	38313-1_{1..1656}	n345634|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1183|NULL|-1.3227000|-0.4318137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345634|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1183|NULL|-1.3227000|-0.4318137	chr4	 54863261	 54864916	-	NA	NA	NA	NA	CHIC2	NA	chr4:54875956-54878515	inter
CUST_41754_PI429285431	1.5786045	A	1.9421185	A	0.777269062950062	0	lncRNA	43301-1_{1..80}	ENST00000390220 ncrna:miRNA chromosome:GRCh37:1:94312388:94312467:1 gene:ENSG00000211575 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390220 ncrna:miRNA chromosome:GRCh37:1:94312388:94312467:1 gene:ENSG00000211575 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 94312388	 94312467	+	ENSG00000211575	ENST00000390220	NA	NA	NA	NA	NA	inner
CUST_48231_PI429285431	0.8947147	A	1.9641054	A	0.476520207490649	0	lncRNA	52093-2_{3001..3357}	hg19_lincRNAsTranscripts_TCONS_l2_00001506 range=chr1:146853355-146989742 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001506 range=chr1:146853355-146989742 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	146856355	146856711	-	NA	NA	NA	NA	BCL9	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30chr1:146890733-146999742"	NA	inter
CUST_33110_PI429285431	1.2979015	A	0.88097084	A	1.33508413383809	0	lncRNA	34710-2_{3001..4227}	n339799|BC040310|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2246|NULL|0.5216030|-0.1984485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n339799|BC040310|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2246|NULL|0.5216030|-0.1984485	chr18	 13489460	 13490686	+	NA	NA	NA	NA	C18orf1	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr18:13476460-13500675"	NA	inner
LNCA_21_P0006120	2.8389864	A	2.818669	A	1.01418258040002	0	lncRNA	TCONS_00015907	NA	NA	NA	NA	XLOC_007265	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007265), lincRNA [TCONS_00015907]"	chr9:1925606-1928425	hs|9p24.3	Agilent_HUMAN_G3V2	TCONS_00015907	TCONS_00015907	chr9	  1925606	  1928425	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003030	4.22126	P	4.233938	P	0.991250779200064	0	lncRNA	TCONS_00006208	NA	NA	NA	NA	XLOC_002808	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002808), lincRNA [TCONS_00006208]"	chr3:128193545-128193604	hs|3q21.3	Agilent_HUMAN_G3V2	TCONS_00006208	TCONS_00006208	chr3	128193545	128193604	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33774_PI429285431	10.840651	P	10.962738	P	0.918857471206782	0	lncRNA	35327-1_{1..1322}	n340559|CR606056|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3021|NULL|3.0101900|-0.1640610	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340559|CR606056|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3021|NULL|3.0101900|-0.1640610	chr17	 19246487	 19247808	-	NA	NA	NA	NA	MAPK7	NA	chr17:19281034-19286857	inner
CUST_22065_PI429285431	3.7328408	P	3.6757631	P	1.04035629603976	0	lncRNA	23671-1_{1..460}	lnc-MTX3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTX3-1:1	chr5	 79111943	 79112402	-	lnc-MTX3-1	lnc-MTX3-1:1	ENSG00000250258.1	CTC-431G16.2	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40"	NA	inter
CUST_6995_PI429285431	1.2909174	A	0.916639	A	1.29619107011104	0	lncRNA	6943-1_{1..1142}	"transcript_id ""ENST00000424852.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000424852.1"" | genecode_v17"	chr22	 42760531	 42761672	-	ENSG00000229891.1	ENST00000424852.1	Z83851.1	Z83851.1-001	NA	NA	NA	inter
CUST_34369_PI429285431	0.8930417	A	1.1604843	A	0.830790946679294	0	lncRNA	35856-1_{1..2935}	n341237|BC020168|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3705|NULL|2.4936300|-0.2478069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341237|BC020168|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3705|NULL|2.4936300|-0.2478069	chr7	 43548326	 43551260	-	NA	NA	NA	NA	HECW1	"hg19_refFlat_HECW1:range=chr7:43283505-436015255'pad=0,hg19_refFlat_HECW1:range=chr7:43283505-436015255'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70chr7:43538326-43572141"	NA	inner
CUST_12110_PI429285431	0.91336125	A	0.91755086	A	0.997100196217578	0	lncRNA	13707-1_{1..3000}	lnc-FAM84B-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM84B-8:1	chr8	128239644	128242643	-	lnc-FAM84B-8	lnc-FAM84B-8:1	XLOC_007215	linc-FAM84B-9	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
CUST_5346_PI429285431	1.1968188	A	0.90536743	A	1.22387088863595	0	lncRNA	5284-1_{1..563}	"transcript_id ""ENST00000558499.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558499.1"" | genecode_v17"	chr15	 96897619	 96898181	+	ENSG00000259275.1	ENST00000558499.1	RP11-522B15.3	RP11-522B15.3-002	NA	NA	NA	inter
CUST_16879_PI429285431	1.3254408	A	2.2454965	A	0.528488615840855	0	lncRNA	18586-1_{1..362}	lnc-SPTBN1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPTBN1-2:1	chr2	 54673813	 54674174	+	lnc-SPTBN1-2	lnc-SPTBN1-2:1	XLOC_001475	linc-SPTBN1-1	SPTBN1	NA	chr2:54683454-54683837	inter
CUST_35264_PI429285431	9.042948	P	9.561207	P	0.698213908046101	0	lncRNA	36665-1_{1..495}	n342271|CR594113|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4762|NULL|-1.2037000|-0.3248544	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342271|CR594113|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4762|NULL|-1.2037000|-0.3248544	chr15	 75590841	 75591335	+	NA	NA	NA	NA	GOLGA6D	NA	chr15:75580841-75588148	inter
CUST_32_PI429285431	3.708578	P	4.678035	P	0.510698242737659	0	lncRNA	31-1_{1..571}	"transcript_id ""ENST00000521608.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521608.1"" | genecode_v17"	chr8	123682624	123683194	-	ENSG00000253819.1	ENST00000521608.1	RP11-973F15.1	RP11-973F15.1-001	NA	NA	NA	inter
CUST_41007_PI429285431	5.6054726	P	5.5498543	P	1.03930442557778	0	lncRNA	41669-1_{1..3000}	n411584|NR_040053|lncRNA|Homosapiens||RefGeneNoncode|NR_040053||2.3284300|-0.2514129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411584|NR_040053|lncRNA|Homosapiens||RefGeneNoncode|NR_040053||2.3284300|-0.2514129	chr12	 56596287	 56599286	-	NA	NA	NA	NA	OBFC2B	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.61;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70chr12:56618125-56623638"	NA	inner
CUST_29850_PI429285431	7.112245	P	7.2142963	P	0.931707298648007	0	lncRNA	31613-1_{1..238}	n333749|L07393|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191827|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191827|-1.0993000|-0.3342803	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333749|L07393|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191827|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191827|-1.0993000|-0.3342803	chr16	  2012061	  2012298	+	NA	NA	NA	NA	RPL3L	"hg19_refFlat_RPS2:range=chr16:2012099-20146265'pad=0,hg19_refFlat_RPS2:range=chr16:2012099-20146265'pad=0 3'pad=0 strand=- repeatMasking=none,-94.50chr16:2002061-2004679"	NA	inter
CUST_25351_PI429285431	1.7899652	A	1.3652841	A	1.34227576712736	0	lncRNA	26881-1_{1..419}	lnc-CLEC18B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLEC18B-3:1	chr16	 74330313	 74330731	-	lnc-CLEC18B-3	lnc-CLEC18B-3:1	ENSG00000261404.1	AC009120.4	PSMD7	NA	chr16:74330673-74340186	inter
CUST_39945_PI429285431	3.2578533	P	3.819154	P	0.677690898000337	0	lncRNA	40819-2_{3001..3448}	n406921|NR_024415|lncRNA|Homosapiens||RefGeneNoncode|NR_024415||2.3855700|-0.3764815	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406921|NR_024415|lncRNA|Homosapiens||RefGeneNoncode|NR_024415||2.3855700|-0.3764815	chr2	192545797	192546244	+	NA	NA	NA	NA	OBFC2A	NA	chr2:192542798-192553248	inter
CUST_16109_PI429285431	1.2195219	A	1.7317213	A	0.701152709820261	0	lncRNA	17815-2_{3001..4024}	lnc-C9orf156-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf156-2:1	chr9	100658088	100659111	-	lnc-C9orf156-2	lnc-C9orf156-2:1	XLOC_007800	linc-XPA-2	C9orf156	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70chr9:100666772-100668103"	NA	inter
LNCA_21_P0008406	2.519956	A	1.829568	A	1.61371745504717	0	lncRNA	TCONS_00022669	NA	NA	NA	NA	XLOC_010966	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010966), lincRNA [TCONS_00022669]"	chr14:21341305-21341246	hs|14q11.2	Agilent_HUMAN_G3V2	TCONS_00022669	TCONS_00022669	chr14	 21341246	 21341305	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_360_PI429201921	1.1192228	A	0.89778376	A	1.16589594883658	0	lncRNA	231-3_{6001..8633}	TC09002365.hg.1	TCONS_l2_00029157-XLOC_l2_015088 // Broad TUCP // linc-WASH1-2 chr9:-:43948-52582 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:-:43948-52582	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00029157-XLOC_l2_015088	linc-WASH1-2	chr9	    43948	    52582	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22590_PI429285431	2.8681421	A	2.939303	A	0.951871742814592	0	lncRNA	24174-1_{1..2078}	lnc-LRTM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-LRTM1-1:1	chr3	 54935186	 54937263	-	lnc-LRTM1-1	lnc-LRTM1-1:1	ENSG00000243715.1	CACNA2D3-AS1	CACNA2D3	"hg19_refFlat_CACNA2D3:range=chr3:54156741-551082335'pad=0,hg19_refFlat_CACNA2D3:range=chr3:54156741-551082335'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10chr3:54925186-54945282"	NA	inner
CUST_5785_PI429285431	0.8906101	A	0.889446	A	1.00080721825833	0	lncRNA	5708-1_{1..3000}	"transcript_id ""ENST00000582527.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582527.1"" | genecode_v17"	chr17	 21934719	 21937718	+	ENSG00000266885.1	ENST00000582527.1	RP11-744K17.2	RP11-744K17.2-001	NA	NA	NA	inter
LNCA_21_P0007702	3.1082554	P	2.6786914	A	1.34682648799866	0	lncRNA	TCONS_00020762	NA	NA	NA	NA	XLOC_010054	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010054), lincRNA [TCONS_00020762]"	chr12:40810226-40810167	hs|12q12	Agilent_HUMAN_G3V2	TCONS_00020762	TCONS_00020762	chr12	 40810167	 40810226	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12538_PI429285431	1.360765	A	1.9149123	A	0.681059477202831	0	lncRNA	14150-1_{1..3000}	lnc-ASB7-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ASB7-4:1	chr15	100891884	100894883	+	lnc-ASB7-4	lnc-ASB7-4:1	XLOC_011384	linc-ASB7-3	ADAMTS17	NA	chr15:100881884-100882183	inter
CUST_13307_PI429285431	4.9663954	P	4.5247126	P	1.35818763204843	0	lncRNA	14942-1_{1..2250}	lnc-MBIP-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MBIP-2:2	chr14	 36645504	 36647753	-	lnc-MBIP-2	lnc-MBIP-2:2	XLOC_010996	linc-RALGAPA1-4	NA	NA	NA	inter
CUST_31218_PI429285431	11.529809	P	11.023423	P	1.42048736593447	0	lncRNA	33009-1_{1..2196}	n337664|AK130268|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|45|NULL|0.6327660|-0.2730890	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337664|AK130268|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|45|NULL|0.6327660|-0.2730890	chr1	  8086797	  8088992	+	NA	NA	NA	NA	ERRFI1	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60chr1:8076797-8086393"	NA	inter
LNCA_21_P0009830	9.472234	P	9.54394	P	0.951512160739352	0	lncRNA	ENST00000429853	NA	NA	NA	NA	XLOC_013470	NA	ENST00000429853	THC2700888	NA	"BROAD Institute lincRNA (XLOC_013470), lincRNA [TCONS_00027906]"	chr20:18051593-18051652	hs|20p11.23	Agilent_HUMAN_G3V2	ENST00000429853	ENST00000429853	chr20	 18051593	 18051652	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26471_PI429285431	0.89400434	A	0.9039609	A	0.99312239821362	0	lncRNA	27979-1_{1..483}	lnc-TIMM9-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMM9-2:12	chr14	 58753529	 58754011	-	lnc-TIMM9-2	lnc-TIMM9-2:12	ENSG00000257621.2	RP11-349A22.5	ARID4A	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-63.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr14:58751427-58763910"	NA	inter
LNCA_21_P0006133	1.5563084	A	0.91041374	A	1.56470931029289	0	lncRNA	TCONS_00016548	NA	NA	NA	NA	XLOC_007306	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007306), lincRNA [TCONS_00016548]"	chr9:25806677-25806736	hs|9p21.2	Agilent_HUMAN_G3V2	TCONS_00016548	TCONS_00016548	chr9	 25806677	 25806736	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14887_PI429285431	3.1867707	A	3.060678	A	1.09133399818838	0	lncRNA	16551-1_{1..446}	lnc-MRPS25-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPS25-4:1	chr3	 14690870	 14691315	-	lnc-MRPS25-4	lnc-MRPS25-4:1	XLOC_003057	linc-GRIP2-3	C3orf19	NA	chr3:14693253-14700939	inter
CUST_519_PI429285431	2.6977973	A	1.2692978	A	2.69166618328558	0	lncRNA	511-1_{1..784}	"transcript_id ""ENST00000445072.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445072.1"" | genecode_v17"	chr1	188874819	188875602	+	ENSG00000226486.1	ENST00000445072.1	RP11-373J16.1	RP11-373J16.1-001	NA	NA	NA	inter
CUST_15163_PI429285431	2.1092236	A	1.3353523	A	1.70985181644729	0	lncRNA	16825-1_{1..781}	lnc-SPTLC3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPTLC3-1:2	chr20	 12947694	 12948474	+	lnc-SPTLC3-1	lnc-SPTLC3-1:2	XLOC_013465	linc-SPTLC3-1	NA	NA	NA	inter
CUST_31725_PI429285431	7.5862174	P	7.637291	P	0.96521778242004	0	lncRNA	33466-1_{1..930}	n338258|AL080221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|651|NULL|-0.9646160|-0.1870462	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338258|AL080221|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|651|NULL|-0.9646160|-0.1870462	chr19	  2231666	  2232595	+	NA	NA	NA	NA	DOT1L	NA	chr19:2221666-2232577	inner
CUST_1045_PI429285431	4.4219594	P	4.7365546	P	0.804076571706059	0	lncRNA	1035-1_{1..612}	"transcript_id ""ENST00000584273.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000584273.1"" | genecode_v17"	chr2	119591276	119591887	-	ENSG00000258910.2	ENST00000584273.1	RP11-19E11.1	RP11-19E11.1-002	EN1	NA	chr2:119599747-119602185	inter
CUST_47921_PI429285431	0.9083913	A	1.0158292	A	0.928235063143223	0	lncRNA	51812-1_{1..2400}	"gi|410172113|ref|XR_171610.1| PREDICTED: Homo sapiens stress responsive DNAJB4 interacting membrane protein 1 (SDIM1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172113|ref|XR_171610.1| PREDICTED: Homo sapiens stress responsive DNAJB4 interacting membrane protein 1 (SDIM1), misc_RNA"	NA	NA	NA	NA	NA	XR_171610.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012413	1.0137751	A	0.87328124	A	1.10228238203343	0	lncRNA	TCONS_l2_00019020	NA	NA	NA	NA	XLOC_l2_010011	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010011), lincRNA [TCONS_l2_00019020]"	chr3:180806689-180834859	hs|3q26.33	Agilent_HUMAN_G3V2	TCONS_l2_00019020	TCONS_l2_00019020	chr3	180806689	180834859	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001437	1.1550652	A	1.8697625	A	0.6093329660196	0	lncRNA	TCONS_00001327	NA	NA	NA	NA	XLOC_000617	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000617), lincRNA [TCONS_00001327]"	chr1:232862040-232862099	hs|1q42.2	Agilent_HUMAN_G3V2	TCONS_00001327	TCONS_00001327	chr1	232862040	232862099	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15665_PI429285431	1.3094879	A	0.9038966	A	1.32463170996028	0	lncRNA	17353-1_{1..809}	lnc-C1D-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C1D-3:5	chr2	 67440771	 67441579	-	lnc-C1D-3	lnc-C1D-3:5	XLOC_002142	linc-SPRED2-11	NA	NA	NA	inter
CUST_33585_PI429285431	0.88422024	A	0.87745184	A	1.00470251968102	0	lncRNA	35150-1_{1..233}	n340338|AF009262|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2799|NULL|-1.1438300|-0.4290935	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340338|AF009262|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2799|NULL|-1.1438300|-0.4290935	chr5	  9360587	  9360819	+	NA	NA	NA	NA	SEMA5A	NA	chr5:9350587-9370820	inner
CUST_300_PI429201921	0.8920541	A	2.2563217	A	0.388431579017666	0	lncRNA	207-2_{3001..6000}	TC16001780.hg.1	TCONS_00024264-XLOC_011882 // Rinn lincRNAs // linc-CPPED1-4 chr16:-:14456965-14464123 // chr16 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr16:-:14456965-14464123	NA	Affy_HUMAN_HTA2.0	TCONS_00024264-XLOC_011882	linc-CPPED1-4	chr16	 14456965	 14464123	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004025	1.8996153	A	0.8748351	A	2.03464937412771	0	lncRNA	TCONS_00009445	NA	NA	NA	NA	XLOC_004456	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004456), lincRNA [TCONS_00009445]"	chr5:87566164-87566223	hs|5q14.3	Agilent_HUMAN_G3V2	TCONS_00009445	TCONS_00009445	chr5	 87566164	 87566223	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12071_PI429285431	0.87371683	A	0.8731621	A	1.00038458346874	0	lncRNA	13662-1_{1..925}	lnc-MCMBP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MCMBP-1:1	chr10	121863162	121864086	-	lnc-MCMBP-1	lnc-MCMBP-1:1	XLOC_008968	linc-C10orf119-1	NA	NA	NA	inter
CUST_29414_PI429285431	1.1272869	A	1.0740068	A	1.03762137174497	0	lncRNA	31168-1_{1..485}	n332781|AF043342|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063739_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063739_04|3.5417600|-0.1099850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332781|AF043342|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000063739_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000063739_04|3.5417600|-0.1099850	chr6	 31544539	 31545023	+	NA	NA	NA	NA	LST1	NA	chr6:31553956-31555326	inner
LNCA_21_P0001318	0.8714622	A	2.5732849	A	0.307397492105691	0	lncRNA	TCONS_00000982	NA	NA	NA	NA	XLOC_000253	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000253), lincRNA [TCONS_00000982]"	chr1:73021019-73021078	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_00000982	TCONS_00000982	chr1	 73021019	 73021078	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007684	3.9514928	P	3.6817513	P	1.20559179215227	0	lncRNA	TCONS_00020694	NA	NA	NA	NA	XLOC_009994	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009994), lincRNA [TCONS_00020694]"	chr12:6289832-6289773	hs|12p13.31	Agilent_HUMAN_G3V2	TCONS_00020694	TCONS_00020694	chr12	  6289773	  6289832	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30382_PI429285431	7.052039	P	7.451252	P	0.758271812907091	0	lncRNA	32158-1_{1..212}	n335494|BC055094|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259495_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259495_04|0.0192439|-0.0362434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335494|BC055094|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259495_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259495_04|0.0192439|-0.0362434	chr6	 31549992	 31550203	-	NA	NA	NA	NA	LST1	NA	chr6:31553956-31556686	inner
CUST_14121_PI429285431	2.0789814	A	2.3490953	A	0.82925407406544	0	lncRNA	15770-1_{1..543}	lnc-SETD7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SETD7-1:1	chr4	140527514	140528056	-	lnc-SETD7-1	lnc-SETD7-1:1	XLOC_004099	linc-SETD7-1	NA	NA	NA	inter
LNCA_21_P0014465	8.234421	P	8.114096	P	1.0869797019448	0	lncRNA	XR_109951	XR_109951	XR_109951	NA	NA	LOC100507286	uncharacterized LOC100507286	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507286 (LOC100507286), miscRNA [XR_109951]"	chr2:87739097-87739038	hs|2p11.2	Agilent_HUMAN_G3V2	XR_109951	XR_109951	chr2	 87739038	 87739097	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26392_PI429285431	0.8944207	A	0.90408	A	0.993327047132241	0	lncRNA	27898-1_{1..474}	lnc-CDR2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDR2-1:3	chr16	 22299712	 22300185	-	lnc-CDR2-1	lnc-CDR2-1:3	ENSG00000261113.1	RP11-141O15.1	EEF2K	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-26.50chr16:22289712-22300066"	NA	inner
LNCA_21_P0008990	1.6483886	A	3.1856523	P	0.344538306773275	0	lncRNA	TCONS_00024500	NA	NA	NA	NA	XLOC_011817	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011817), lincRNA [TCONS_00024500]"	chr16:87153364-87153423	hs|16q24.2	Agilent_HUMAN_G3V2	TCONS_00024500	TCONS_00024500	chr16	 87153364	 87153423	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7797_PI429285431	4.0421715	P	4.6077466	P	0.675686014819722	0	lncRNA	9421-1_{1..1753}	lnc-DHX34-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DHX34-2:1	chr19	 47998285	 48000037	+	lnc-DHX34-2	lnc-DHX34-2:1	ENSG00000245602	AC073548.1	NAPA	"hg19_refFlat_NAPA:range=chr19:47991545-480181975'pad=0,hg19_refFlat_NAPA:range=chr19:47991545-480181975'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00chr19:47990891-48009639"	NA	inter
LNCA_21_P0007626	5.074514	P	6.4292808	P	0.390998018127899	0	lncRNA	THC2748864	NA	NA	NA	NA	XLOC_009880	NA	NA	THC2748864	NA	"BROAD Institute lincRNA (XLOC_009880), lincRNA [TCONS_00020562]"	chr12:111841048-111841107	hs|12q24.12	Agilent_HUMAN_G3V2	THC2748864	THC2748864	chr12	111841048	111841107	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007788	2.6505933	A	2.6758533	A	0.982643492279634	0	lncRNA	THC2787517	NA	NA	NA	NA	XLOC_010244	NA	NA	THC2787517	NA	"BROAD Institute lincRNA (XLOC_010244), lincRNA [TCONS_00020980]"	chr12:127215183-127215124	hs|12q24.32	Agilent_HUMAN_G3V2	THC2787517	THC2787517	chr12	127215124	127215183	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45233_PI429285431	1.0202563	A	2.5187478	A	0.353923263783951	0	lncRNA	49690-1_{1..3000}	"gi|310120234|ref|XR_108862.1| PREDICTED: Homo sapiens uncharacterized LOC100506342 (LOC100506342), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310120234|ref|XR_108862.1| PREDICTED: Homo sapiens uncharacterized LOC100506342 (LOC100506342), misc_RNA"	NA	NA	NA	NA	NA	XR_108862.1	NA	NA	NA	NA	NA	Unknown
CUST_288_PI429285431	0.8964057	A	0.89633584	A	1.00004842443446	0	lncRNA	279-1_{1..339}	"transcript_id ""ENST00000438619.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438619.1"" | genecode_v17"	chr1	 75428998	 75429336	+	ENSG00000229943.1	ENST00000438619.1	RP11-93N20.1	RP11-93N20.1-001	NA	NA	NA	inter
LNCA_21_P0013711	0.88538814	A	1.1710961	A	0.820338952899781	0	lncRNA	ENST00000443993	NA	BC037833	NA	Hs.545599	XLOC_l2_015038	NA	ENST00000443993	THC2624285	NA	"BROAD Institute lincRNA (XLOC_l2_015038), lincRNA [TCONS_l2_00029867]"	chr9:132346106-132346165	hs|9q34.11	Agilent_HUMAN_G3V2	ENST00000443993	ENST00000443993	chr9	132346106	132346165	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27422_PI429285431	0.9033512	A	0.89872605	A	1.00321105410666	0	lncRNA	28987-1_{1..554}	n324592|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039866|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039866|-1.0310900|-0.3577388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324592|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039866|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039866|-1.0310900|-0.3577388	chr6	 11918820	 11919373	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35077_PI429285431	7.8533335	P	7.921895	P	0.95358833968993	0	lncRNA	36487-1_{1..3000}	n342039|BX648958|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4520|NULL|-0.6279620|-0.2340920	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342039|BX648958|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4520|NULL|-0.6279620|-0.2340920	chr12	117890858	117893857	-	NA	NA	NA	NA	KSR2	NA	chr12:117890817-117906866	inner
CUST_19135_PI429285431	0.977009	A	0.9002819	A	1.05462280589071	0	lncRNA	20813-3_{6001..9000}	lnc-MYB-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYB-6:1	NA	     6000	     8999	NA	NA	NA	NA	NA	NA	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00"	NA	Unknown
CUST_4172_PI429285431	0.90264684	A	0.9124447	A	0.993231650126956	0	lncRNA	4130-1_{1..465}	"transcript_id ""ENST00000544015.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000544015.1"" | genecode_v17"	chr12	 15933002	 15933466	+	ENSG00000255565.1	ENST00000544015.1	RP11-6B19.1	RP11-6B19.1-001	EPS8	NA	chr12:15923002-15942510	inner
LNCA_21_P0006901	5.967639	P	5.294243	P	1.59482264994946	0	lncRNA	TCONS_00018301	NA	NA	NA	NA	XLOC_008577	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008577), lincRNA [TCONS_00018301]"	chr10:100995906-100996235	hs|10q24.2	Agilent_HUMAN_G3V2	TCONS_00018301	TCONS_00018301	chr10	100995906	100996235	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009614	4.8834467	P	5.335198	P	0.731154753963692	0	lncRNA	TCONS_00026643	NA	NA	NA	NA	XLOC_012720	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012720), lincRNA [TCONS_00026643]"	chr18:72883111-72883170	hs|18q22.3	Agilent_HUMAN_G3V2	TCONS_00026643	TCONS_00026643	chr18	 72883111	 72883170	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26986_PI429285431	2.231537	A	1.0974828	A	2.19474632710647	0	lncRNA	28512-1_{1..2818}	n324078|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129817|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129817|-1.1282000|-0.3994072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324078|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129817|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129817|-1.1282000|-0.3994072	chr9	 67887697	 67890514	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29917_PI429285431	12.569946	P	12.580746	P	0.992541960681191	0	lncRNA	31681-1_{1..212}	n334056|M28424|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195240|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195240|1.7308400|0.0028616	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n334056|M28424|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195240|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195240|1.7308400|0.0028616	chr7	  5567623	  5567834	-	NA	NA	NA	NA	ACTB	NA	chr7:5566779-5570232	inner
LNCA_21_P0014541	3.6057549	P	3.534119	P	1.05090765291545	0	lncRNA	XR_110249	XR_110249	XR_110249	NA	NA	LOC100507226	uncharacterized LOC100507226	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507226 (LOC100507226), miscRNA [XR_110249]"	chr14:101379122-101380857	hs|14q32.2	Agilent_HUMAN_G3V2	XR_110249	XR_110249	chr14	101379122	101380857	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22368_PI429285431	0.901451	A	0.88446367	A	1.01184431479429	0	lncRNA	23962-1_{1..494}	lnc-BCL6-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BCL6-6:1	chr3	188286163	188286656	-	lnc-BCL6-6	lnc-BCL6-6:1	ENSG00000224563.1	LPP-AS1	LPP	NA	chr3:188276163-188296454	inner
CUST_27222_PI429285431	1.1770202	A	0.90115905	A	1.21071655476124	0	lncRNA	28766-1_{1..554}	n324356|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042500|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042500|1.3192900|-0.4113811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324356|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042500|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042500|1.3192900|-0.4113811	chr6	143313040	143313593	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33556_PI429285431	1.0395004	A	2.30996	A	0.414527695598261	0	lncRNA	35123-2_{3001..3267}	n340304|AK127466|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2765|NULL|-1.0202700|-0.1602215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340304|AK127466|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2765|NULL|-1.0202700|-0.1602215	chr5	  1386274	  1386540	-	NA	NA	NA	NA	SLC6A3	NA	chr5:1392905-1396524	inter
CUST_16870_PI429285431	1.5436726	A	3.1718354	A	0.323499906420714	0	lncRNA	18576-1_{1..227}	lnc-MRPL47-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPL47-1:1	chr3	179245503	179245729	-	lnc-MRPL47-1	lnc-MRPL47-1:1	XLOC_003338	linc-GNB4-2	NA	NA	NA	inter
CUST_12393_PI429285431	0.9092511	A	0.9143595	A	0.996465388441261	0	lncRNA	14006-1_{1..323}	lnc-HRCT1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HRCT1-3:2	chr9	 35937014	 35937336	+	lnc-HRCT1-3	lnc-HRCT1-3:2	XLOC_007342	linc-RECK-2	OR2S2	NA	chr9:35943207-35947121	inter
LNCA_21_P0006838	0.8768711	A	0.8738031	A	1.00212883831544	0	lncRNA	TCONS_00018132	NA	NA	NA	NA	XLOC_008407	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008407), lincRNA [TCONS_00018132]"	chr10:19219514-19219573	hs|10p12.31	Agilent_HUMAN_G3V2	TCONS_00018132	TCONS_00018132	chr10	 19219514	 19219573	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41815_PI429285431	7.258396	P	7.2730074	P	0.989923263262231	0	lncRNA	43410-1_{1..67}	ENST00000580969 ncrna:miRNA chromosome:GRCh37:17:37882748:37882814:1 gene:ENSG00000265178 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580969 ncrna:miRNA chromosome:GRCh37:17:37882748:37882814:1 gene:ENSG00000265178 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 37882748	 37882814	+	ENSG00000265178	ENST00000580969	NA	NA	ERBB2	NA	chr17:37872748-37884915	inner
CUST_20907_PI429285431	3.7801962	P	3.989797	P	0.864776485624207	0	lncRNA	22538-1_{1..803}	lnc-SBF2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SBF2-1:1	chr11	 10324843	 10325645	-	lnc-SBF2-1	lnc-SBF2-1:1	ENSG00000254554.1	RP11-351I24.1	SBF2	NA	chr11:10314843-10315754	inter
LNCA_21_P0004725	0.87582004	A	0.874829	A	1.00068717257679	0	lncRNA	ENST00000415575	XR_108663	XR_108663	NA	Hs.598354	XLOC_005599	NA	ENST00000415575	THC2634742	NA	"PREDICTED: Homo sapiens hypothetical LOC100506091, transcript variant 1 (LOC100506091), miscRNA [XR_108663]"	chr6:8342470-8342411	hs|6p24.3	Agilent_HUMAN_G3V2	ENST00000415575	ENST00000415575	chr6	  8342411	  8342470	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48100_PI429285431	7.1668496	P	7.0901914	P	1.05457244058538	0	lncRNA	51974-1_{1..981}	"gi|410170169|ref|XR_172481.1| PREDICTED: Homo sapiens postmeiotic segregation increased 2 pseudogene 3 (PMS2P3), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170169|ref|XR_172481.1| PREDICTED: Homo sapiens postmeiotic segregation increased 2 pseudogene 3 (PMS2P3), misc_RNA"	NA	NA	NA	NA	NA	XR_172481.1	NA	NA	NA	NA	NA	Unknown
CUST_32740_PI429285431	11.527642	P	11.424141	P	1.07437750241585	0	lncRNA	34379-2_{3001..3589}	n339367|D87462|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1799|NULL|9.9077300|-0.1988318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339367|D87462|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1799|NULL|9.9077300|-0.1988318	chr3	 52438028	 52438616	-	NA	NA	NA	NA	DNAH1	NA	chr3:52425028-52434513	inner
CUST_19480_PI429285431	7.9870567	P	8.031175	P	0.969882377393813	0	lncRNA	21137-1_{1..2202}	lnc-HPGD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-HPGD-1:1	chr4	175460352	175462553	-	lnc-HPGD-1	lnc-HPGD-1:1	ENSG00000250596.1	RP11-440I14.2	NA	NA	NA	inter
LNCA_21_P0006975	1.1351936	A	0.87372017	A	1.19870231896521	0	lncRNA	TCONS_00018450	NA	NA	NA	NA	XLOC_008747	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008747), lincRNA [TCONS_00018450]"	chr10:22534358-22534299	hs|10p12.31	Agilent_HUMAN_G3V2	TCONS_00018450	TCONS_00018450	chr10	 22534299	 22534358	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012232	0.8719376	A	0.9044969	A	0.977684374009696	0	lncRNA	TCONS_l2_00017505	NA	NA	NA	NA	XLOC_l2_009216	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009216), lincRNA [TCONS_l2_00017505]"	chr21:40295697-40295638	hs|21q22.2	Agilent_HUMAN_G3V2	TCONS_l2_00017505	TCONS_l2_00017505	chr21	 40295638	 40295697	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35591_PI429285431	2.973809	P	2.7678058	A	1.1534881635758	0	lncRNA	37006-1_{1..320}	n342727|Z83949|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5230|NULL|-1.1698700|-0.3411493	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342727|Z83949|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5230|NULL|-1.1698700|-0.3411493	chr6	 25454468	 25454787	+	NA	NA	NA	NA	LRRC16A	NA	chr6:25444468-25464788	inner
LNCA_21_P0010057	5.475177	P	5.7749515	P	0.812379365137263	0	lncRNA	TCONS_00028441	NA	NA	NA	NA	XLOC_013792	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013792), lincRNA [TCONS_00028441]"	chr20:49002437-49002378	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028441	TCONS_00028441	chr20	 49002378	 49002437	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005184	6.0606136	P	6.341112	P	0.823306544903851	0	lncRNA	TCONS_00012831	NA	NA	NA	NA	XLOC_005939	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005939), lincRNA [TCONS_00012831]"	chr6:169827877-169827818	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012831	TCONS_00012831	chr6	169827818	169827877	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25480_PI429285431	0.92511046	A	0.99063766	A	0.955596052998384	0	lncRNA	27010-1_{1..543}	lnc-RAB3A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAB3A-1:1	chr19	 18314706	 18315248	-	lnc-RAB3A-1	lnc-RAB3A-1:1	ENSG00000250638.1	AC068499.6	PDE4C	NA	chr19:18318771-18324845	inner
CUST_49167_PI429285431	6.0521593	P	6.605648	P	0.681370456416479	0	lncRNA	52993-1_{1..861}	hg19_lincRNAsTranscripts_TCONS_l2_00021307 range=chr4:139012035-139052080 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021307 range=chr4:139012035-139052080 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	139012035	139012895	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006787	0.9097883	A	0.92991066	A	0.986149062203759	0	lncRNA	ENST00000458489	NA	NA	NA	NA	XLOC_008926	NA	ENST00000458489	NA	NA	"BROAD Institute lincRNA (XLOC_008926), lincRNA [TCONS_00018034]"	chr10:103467930-103464412	hs|10q24.32	Agilent_HUMAN_G3V2	ENST00000458489	ENST00000458489	chr10	103464412	103467930	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33829_PI429285431	0.9251792	A	0.92079866	A	1.00304097335732	0	lncRNA	35377-1_{1..424}	n340615|BC042122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3077|NULL|-0.9762870|-0.1709383	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340615|BC042122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3077|NULL|-0.9762870|-0.1709383	chr5	131973739	131974162	-	NA	NA	NA	NA	RAD50	"hg19_refFlat_RAD50:range=chr5:131893017-1319780565'pad=0,hg19_refFlat_RAD50:range=chr5:131893017-1319780565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60chr5:131963739-131980313"	NA	inner
CUST_23846_PI429285431	0.892523	A	0.9023009	A	0.993245391798145	0	lncRNA	25409-1_{1..1194}	lnc-LHPP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LHPP-1:1	chr10	126402003	126403196	+	lnc-LHPP-1	lnc-LHPP-1:1	ENSG00000233334.1	RP11-464O2.2	FAM53B	NA	chr10:126392003-126412489	inner
CUST_46718_PI429285431	8.531628	P	8.6626	P	0.913215973646166	0	lncRNA	50874-1_{1..1356}	"gi|259155323|ref|NR_028505.1| Homo sapiens MIR22 host gene (non-protein coding) (MIR22HG), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|259155323|ref|NR_028505.1| Homo sapiens MIR22 host gene (non-protein coding) (MIR22HG), transcript variant 4, non-coding RNA"	Chr17	  1614798	  1616153	-	84981	NR_028505.1	NA	NA	NA	NA	NA	inter
CUST_22890_PI429285431	1.835687	A	1.3405266	A	1.40947745327272	0	lncRNA	24467-1_{1..1415}	lnc-POLR3E-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POLR3E-2:1	chr16	 22386180	 22387594	+	lnc-POLR3E-2	lnc-POLR3E-2:1	ENSG00000260790.1	RP11-21M24.2	CDR2	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-19.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-19.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50chr16:22376180-22385938"	NA	inter
CUST_50876_PI429285431	4.694982	P	4.86186	P	0.890768224306753	0	lncRNA	54520-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00004830 range=chr11:124981873-124996846 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004830 range=chr11:124981873-124996846 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	124981873	124984872	+	NA	NA	NA	NA	TMEM218	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60chr11:124971873-124973205"	NA	inter
CUST_44361_PI429285431	2.955929	A	3.1452854	P	0.876996870719592	0	lncRNA	48981-1_{1..3000}	"gi|402167320|ref|NR_073124.1| Homo sapiens non-SMC condensin I complex, subunit G (NCAPG), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402167320|ref|NR_073124.1| Homo sapiens non-SMC condensin I complex, subunit G (NCAPG), transcript variant 2, non-coding RNA"	Chr4	 17812436	 17815435	+	64151	NR_073124.1	NA	NA	NA	NA	NA	inter
LNCA_19_P00801088	0.8989831	A	2.338689	A	0.368642446116678	0	lncRNA	ENST00000421640	XR_110942	XR_110942	NA	NA	LOC100289026	NA	ENST00000421640	THC2528940	NA	"PREDICTED: Homo sapiens hypothetical LOC100289026 (LOC100289026), miscRNA [XR_110942]"	chr1:143394379-143394438	hs|1q21.1	Agilent_HUMAN_G3V2	ENST00000421640	ENST00000421640	chr1	143394379	143394438	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17253_PI429285431	0.89791137	A	0.8998744	A	0.998640256580096	0	lncRNA	18971-1_{1..1498}	lnc-C17orf97-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C17orf97-8:1	chr17	    48436	    49933	+	lnc-C17orf97-8	lnc-C17orf97-8:1	XLOC_012064	linc-C17orf97-3	NA	NA	NA	inter
LNCA_21_P0003948	2.112462	A	3.4484499	P	0.396120727745136	0	lncRNA	ENST00000513419	NA	NA	NA	NA	XLOC_004250	NA	ENST00000513419	THC2681410	NA	"BROAD Institute lincRNA (XLOC_004250), lincRNA [TCONS_00009327]"	chr5:1958907-1958966	hs|5p15.33	Agilent_HUMAN_G3V2	ENST00000513419	ENST00000513419	chr5	  1958907	  1958966	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003158	2.7722607	A	2.0197294	A	1.68474623296036	0	lncRNA	TCONS_00006603	NA	NA	NA	NA	XLOC_003210	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003210), lincRNA [TCONS_00006603]"	chr3:108447360-108447301	hs|3q13.13	Agilent_HUMAN_G3V2	TCONS_00006603	TCONS_00006603	chr3	108447301	108447360	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10060_PI429285431	0.92026067	A	0.9049711	A	1.01065427922911	0	lncRNA	11585-1_{1..564}	lnc-SPAG1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPAG1-3:3	chr8	101512990	101513553	+	lnc-SPAG1-3	lnc-SPAG1-3:3	XLOC_006883	linc-GRHL2-7	NA	NA	NA	inter
LNCA_21_P0006692	4.5018096	P	5.0785084	P	0.670496264660336	0	lncRNA	ENST00000428940	NA	NA	NA	NA	XLOC_008542	NA	ENST00000428940	THC2753400	NA	"BROAD Institute lincRNA (XLOC_008542), lincRNA [TCONS_00018262]"	chr10:88282286-88282345	hs|10q23.2	Agilent_HUMAN_G3V2	ENST00000428940	ENST00000428940	chr10	 88282286	 88282345	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43058_PI429285431	3.7170072	P	3.5903494	P	1.09176155468722	0	lncRNA	46822-1_{1..122}	ENST00000408187 ncrna:snRNA chromosome:GRCh37:14:50151262:50151383:1 gene:ENSG00000221114 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408187 ncrna:snRNA chromosome:GRCh37:14:50151262:50151383:1 gene:ENSG00000221114 gene_biotype:snRNA transcript_biotype:snRNA	chr14	 50151262	 50151383	+	ENSG00000221114	ENST00000408187	NA	NA	KLHDC1	NA	chr14:50159823-50161383	inner
CUST_4625_PI429285431	2.1125374	A	2.2057447	A	0.937436387097316	0	lncRNA	4571-1_{1..413}	"transcript_id ""ENST00000452288.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452288.1"" | genecode_v17"	chr13	 49144775	 49145187	-	ENSG00000233456.1	ENST00000452288.1	RP11-165D7.3	RP11-165D7.3-001	NA	NA	NA	inter
LNCA_33_P3366545	1.3608022	A	2.127006	A	0.587962561690876	0	lncRNA	XR_108728	XR_108728	XR_108728	   401296	Hs.520617	LOC401296	uncharacterized LOC401296	ENST00000382528	THC2486237	NA	"PREDICTED: Homo sapiens hypothetical LOC401296 (LOC401296), miscRNA [XR_108728]"	chr7:1732505-1732446	hs|7p22.3	Agilent_HUMAN_G3V2	XR_108728	XR_108728	chr7	  1732446	  1732505	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004452	1.8806639	A	1.9326586	A	0.964601728215761	0	lncRNA	TCONS_00010518	NA	NA	NA	NA	XLOC_005036	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005036), lincRNA [TCONS_00010518]"	chr5:141548176-141536525	hs|5q31.3	Agilent_HUMAN_G3V2	TCONS_00010518	TCONS_00010518	chr5	141536525	141548176	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4344_PI429285431	1.4677588	A	0.8846883	A	1.49803413688433	0	lncRNA	4299-1_{1..792}	"transcript_id ""ENST00000551401.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551401.1"" | genecode_v17"	chr12	 81676463	 81677254	+	ENSG00000257467.1	ENST00000551401.1	RP11-121G22.3	RP11-121G22.3-004	PPFIA2	NA	chr12:81666463-81716188	inner
LNCA_21_P0005777	0.87513316	A	0.8747858	A	1.00024080059245	0	lncRNA	TCONS_00014881	NA	NA	NA	NA	XLOC_006949	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006949), lincRNA [TCONS_00014881]"	chr8:143078833-143078892	hs|8q24.3	Agilent_HUMAN_G3V2	TCONS_00014881	TCONS_00014881	chr8	143078833	143078892	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34552_PI429285431	12.159744	P	11.934486	P	1.16898628199249	0	lncRNA	36012-1_{1..1608}	n341433|AK000903|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3903|NULL|1.1171200|-0.2440895	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341433|AK000903|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3903|NULL|1.1171200|-0.2440895	chr13	110885114	110886721	-	NA	NA	NA	NA	COL4A1	NA	chr13:110875114-110896524	inner
CUST_30134_PI429285431	3.9235792	P	4.0692487	P	0.903959786790172	0	lncRNA	31908-1_{1..563}	n334781|AJ227881|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245030|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245030|-1.0964800|-0.4274592	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334781|AJ227881|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245030|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245030|-1.0964800|-0.4274592	chr10	 78358392	 78358954	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32675_PI429285431	3.0102062	A	2.2509377	A	1.692632179694	0	lncRNA	34326-1_{1..2060}	n339306|AK094104|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1738|NULL|-0.8689720|-0.1625546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339306|AK094104|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1738|NULL|-0.8689720|-0.1625546	chr16	 81652109	 81654168	+	NA	NA	NA	NA	CMIP	NA	chr16:81642109-81664164	inner
CUST_20912_PI429285431	2.022882	A	3.5709379	A	0.341970575409859	0	lncRNA	22543-1_{1..430}	lnc-PPIAL4G-5:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PPIAL4G-5:12	chr1	143226314	143226743	-	lnc-PPIAL4G-5	lnc-PPIAL4G-5:12	ENSG00000225278.1	BX571672.5	NA	NA	NA	inter
CUST_7874_PI429285431	3.3095424	P	2.9368541	A	1.29476322988888	0	lncRNA	9495-1_{1..445}	lnc-SENP6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SENP6-3:1	chr6	 76006237	 76006681	+	lnc-SENP6-3	lnc-SENP6-3:1	ENSG00000225793	RP1-234P15.4	NA	NA	NA	inter
CUST_21307_PI429285431	1.5324585	A	1.6253368	A	0.937650189551598	0	lncRNA	22930-1_{1..564}	lnc-SLC38A8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC38A8-2:1	chr16	 83841123	 83841686	-	lnc-SLC38A8-2	lnc-SLC38A8-2:1	ENSG00000260228.1	RP11-483P21.2	HSBP1	NA	chr16:83841593-83846594	inter
LNCA_21_P0014412	0.876784	A	0.8743616	A	1.00168049017386	0	lncRNA	XR_109659	XR_109659	XR_109659	NA	Hs.334192	LOC100289065	uncharacterized LOC100289065	ENST00000455275	THC2677700	NA	"PREDICTED: Homo sapiens hypothetical LOC100289065 (LOC100289065), miscRNA [XR_109659]"	chr21:27548080-27548139	hs|21q21.3	Agilent_HUMAN_G3V2	XR_109659	XR_109659	chr21	 27548080	 27548139	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24207_PI429285431	1.420866	A	0.8785017	A	1.45635725246519	0	lncRNA	25758-1_{1..802}	lnc-ELAC2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ELAC2-2:1	chr17	 12876350	 12877151	-	lnc-ELAC2-2	lnc-ELAC2-2:1	ENSG00000266438.1	RP11-1090M7.3	ARHGAP44	NA	chr17:12866350-12887151	inner
CUST_37780_PI429285431	5.0626516	P	4.5801477	P	1.39716644516898	0	lncRNA	38878-1_{1..712}	n346292|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1842|NULL|-1.2832000|-0.2812418	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346292|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1842|NULL|-1.2832000|-0.2812418	chr15	 20588046	 20588757	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24115_PI429285431	1.4551215	A	1.184358	A	1.20644613162983	0	lncRNA	25665-1_{1..842}	lnc-TFEC-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TFEC-2:4	chr7	115967886	115968727	-	lnc-TFEC-2	lnc-TFEC-2:4	ENSG00000243243.1	AC073130.3	NA	NA	NA	inter
CUST_32886_PI429285431	6.176792	P	6.130326	P	1.03273206087227	0	lncRNA	34513-1_{1..2250}	n339552|BC034773|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1994|NULL|-0.6750100|-0.2894254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339552|BC034773|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1994|NULL|-0.6750100|-0.2894254	chr20	  1306053	  1308302	+	NA	NA	NA	NA	FKBP1A	NA	chr20:1349621-1369379	inter
CUST_33348_PI429285431	0.9143729	A	0.92473423	A	0.992843801729022	0	lncRNA	34929-1_{1..483}	n340066|AF087982|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2521|NULL|-1.2664000|-0.3657761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340066|AF087982|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2521|NULL|-1.2664000|-0.3657761	chr10	 74829069	 74829551	-	NA	NA	NA	NA	P4HA1	NA	chr10:74819069-74839545	inner
LNCA_19_P00322245	4.7597675	P	4.980019	P	0.858415778761567	0	lncRNA	BC032741	NA	BC032741	NA	NA	XLOC_l2_015585	NA	NA	THC2503862	NA	"BROAD Institute lincRNA (XLOC_l2_015585), lincRNA [TCONS_l2_00030733]"	chrX:102121415-102121474	hs|Xq22.1	Agilent_HUMAN_G3V2	BC032741	BC032741	chrX	102121415	102121474	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13046_PI429285431	7.1920924	P	7.356786	P	0.892117967579984	0	lncRNA	14671-1_{1..994}	lnc-MAP3K9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP3K9-1:1	chr14	 71648070	 71649063	-	lnc-MAP3K9-1	lnc-MAP3K9-1:1	XLOC_011063	linc-MAP3K9-2	NA	NA	NA	inter
CUST_20847_PI429285431	0.9149884	A	0.93105096	A	0.988928032280445	0	lncRNA	22478-1_{1..721}	lnc-EEA1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EEA1-1:2	chr12	 93609358	 93610078	-	lnc-EEA1-1	lnc-EEA1-1:2	ENSG00000257322.1	RP11-511B23.2	NA	NA	NA	inter
CUST_22804_PI429285431	0.9229406	A	0.9270944	A	0.997124946147507	0	lncRNA	24384-1_{1..3000}	lnc-GGCT-1:19	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GGCT-1:19	chr7	 30603339	 30606338	-	lnc-GGCT-1	lnc-GGCT-1:19	ENSG00000196295.5	AC005154.6	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00"	NA	inter
CUST_11023_PI429285431	8.1361	P	8.875728	P	0.598893757607117	0	lncRNA	12569-2_{3001..5951}	lnc-C5orf32-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf32-1:2	chr5	139555333	139558283	+	lnc-C5orf32-1	lnc-C5orf32-1:2	XLOC_004577	linc-C5orf32-1	C5orf32	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60chr5:139554653-139562636"	NA	inter
CUST_3995_PI429285431	0.9091427	A	0.9178904	A	0.993954901984858	0	lncRNA	3955-1_{1..455}	"transcript_id ""ENST00000527543.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527543.1"" | genecode_v17"	chr11	 67702034	 67702488	-	ENSG00000254610.1	ENST00000527543.1	RP5-903G2.2	RP5-903G2.2-001	NA	NA	NA	inter
CUST_26153_PI429285431	0.89076877	A	0.9000805	A	0.9935663854981	0	lncRNA	27664-1_{1..1937}	lnc-C8A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C8A-2:1	chr1	 57479407	 57481343	+	lnc-C8A-2	lnc-C8A-2:1	ENSG00000231229.1	RP6-239D12.1	DAB1	NA	chr1:57469407-57490373	inner
CUST_1955_PI429285431	0.8996656	A	0.9062261	A	0.995462931654677	0	lncRNA	1948-1_{1..947}	"transcript_id ""ENST00000512609.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512609.1"" | genecode_v17"	chr4	157607816	157608762	+	ENSG00000248912.1	ENST00000512609.1	RP11-171N4.4	RP11-171N4.4-001	NA	NA	NA	inter
CUST_15779_PI429285431	2.0290692	A	2.9412644	A	0.531375935913135	0	lncRNA	17469-1_{1..723}	lnc-ACP1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACP1-7:1	chr2	   496113	   496835	+	lnc-ACP1-7	lnc-ACP1-7:1	XLOC_001306	linc-SNTG2-6	NA	NA	NA	inter
CUST_5164_PI429285431	5.484933	P	5.5430517	P	0.960515832753844	0	lncRNA	5104-1_{1..570}	"transcript_id ""ENST00000558323.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000558323.1"" | genecode_v17"	chr15	 44827287	 44827856	-	ENSG00000179523.4	ENST00000558323.1	RP11-151N17.2	RP11-151N17.2-005	EIF3J	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-16.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40chr15:44829266-44838141"	NA	inter
LNCA_21_P0003192	2.5582561	A	2.6822777	A	0.917626143529074	0	lncRNA	TCONS_00006712	NA	NA	NA	NA	XLOC_003338	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003338), lincRNA [TCONS_00006712]"	chr3:179245550-179243747	hs|3q26.33	Agilent_HUMAN_G3V2	TCONS_00006712	TCONS_00006712	chr3	179243747	179245550	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36493_PI429285431	0.89626235	A	0.8964277	A	0.999885394681386	0	lncRNA	37694-2_{3001..3489}	n344994|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_543|NULL|-1.3531100|-0.4263074	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344994|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_543|NULL|-1.3531100|-0.4263074	chr8	 28431148	 28431636	+	NA	NA	NA	NA	FZD3	NA	chr8:28418148-28431785	inner
CUST_16058_PI429285431	6.592304	P	6.7899566	P	0.871968183613706	0	lncRNA	17759-1_{1..1421}	lnc-IFNK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IFNK-1:1	chr9	 27535711	 27537131	+	lnc-IFNK-1	lnc-IFNK-1:1	XLOC_007308	linc-ACO1-2	MOBKL2B	NA	chr9:27525711-27529850	inter
CUST_40706_PI429285431	0.89555925	A	1.068902	A	0.886785600974124	0	lncRNA	41447-1_{1..1333}	n410270|NR_037175_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037175_7||-0.8842950|-0.2450535	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410270|NR_037175_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037175_7||-0.8842950|-0.2450535	chr6	  4256390	  4257722	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26969_PI429285431	3.3632774	P	3.7463682	P	0.766793068076667	0	lncRNA	28494-1_{1..444}	n324055|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052827|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052827|-0.9020460|-0.2090645	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324055|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052827|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052827|-0.9020460|-0.2090645	chr9	 85024065	 85024508	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19476_PI429285431	0.8771419	A	0.90305585	A	0.982198177035861	0	lncRNA	21133-1_{1..467}	lnc-CCDC38-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC38-1:1	chr12	 96252532	 96252998	-	lnc-CCDC38-1	lnc-CCDC38-1:1	ENSG00000258343.1	RP11-536G4.2	SNRPF	NA	chr12:96252709-96260238	inter
CUST_29950_PI429285431	3.3458529	P	3.42752	P	0.944965065298797	0	lncRNA	31714-1_{1..205}	n334153|M95729|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196911_02|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196911_02|-1.0339800|-0.3140568	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334153|M95729|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196911_02|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196911_02|-1.0339800|-0.3140568	chr6	  4012035	  4012239	-	NA	NA	NA	NA	PRPF4B	NA	chr6:4021569-4022240	inter
CUST_11936_PI429285431	0.88662785	A	0.8945339	A	0.994534931850404	0	lncRNA	13516-1_{1..1344}	lnc-HS1BP3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HS1BP3-1:4	chr2	 20739630	 20740973	-	lnc-HS1BP3-1	lnc-HS1BP3-1:4	XLOC_002010	linc-PUM2-2	HS1BP3	NA	chr2:20729630-20749861	inter
CUST_22338_PI429285431	0.8893276	A	0.89834154	A	0.993771490987259	0	lncRNA	23932-2_{3001..3196}	lnc-SAP30-5:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:11	chr4	174463297	174463492	+	lnc-SAP30-5	lnc-SAP30-5:11	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174450297-174451378	inter
CUST_19083_PI429285431	1.2870791	A	1.2164294	A	1.05018951710377	0	lncRNA	20773-2_{3001..4387}	lnc-GLB1L2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLB1L2-1:7	chr11	134375838	134377224	+	lnc-GLB1L2-1	lnc-GLB1L2-1:7	ENSG00000255545	RP11-627G23.1	NA	NA	NA	inter
CUST_37520_PI429285431	2.8923142	A	2.069063	A	1.76938892731602	0	lncRNA	38623-1_{1..389}	n345993|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1542|NULL|-1.3186400|-0.1156839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345993|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1542|NULL|-1.3186400|-0.1156839	chr2	242913520	242913908	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18007_PI429285431	0.919371	A	0.88297176	A	1.0255510014857	0	lncRNA	19740-1_{1..261}	lnc-HES1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HES1-2:3	chr3	193799167	193799427	+	lnc-HES1-2	lnc-HES1-2:3	XLOC_002975	linc-HES1-1	NA	NA	NA	inter
CUST_41171_PI429285431	6.6603384	P	6.818133	P	0.896394312322198	0	lncRNA	42001-1_{1..98}	ENST00000583986 ncrna:miRNA chromosome:GRCh37:2:239990513:239990610:-1 gene:ENSG00000266109 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583986 ncrna:miRNA chromosome:GRCh37:2:239990513:239990610:-1 gene:ENSG00000266109 gene_biotype:miRNA transcript_biotype:miRNA	chr2	239990513	239990610	-	ENSG00000266109	ENST00000583986	NA	NA	HDAC4	NA	chr2:239980513-240000610	inner
CUST_18765_PI429285431	7.0787473	P	8.013648	P	0.523078471894793	0	lncRNA	20461-1_{1..699}	lnc-BSDC1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BSDC1-1:3	chr1	 32827559	 32828257	-	lnc-BSDC1-1	lnc-BSDC1-1:3	ENSG00000225828	RP4-811H24.6	BSDC1	NA	chr1:32830704-32837844	inner
CUST_15232_PI429285431	1.1536055	A	0.8741408	A	1.21374445104825	0	lncRNA	16903-1_{1..303}	lnc-FRG2C-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRG2C-5:1	chr3	 74956582	 74956884	+	lnc-FRG2C-5	lnc-FRG2C-5:1	XLOC_002708	linc-FRG2C-5	NA	NA	NA	inter
CUST_47904_PI429285431	7.8576174	P	7.84914	P	1.00589338396631	0	lncRNA	51797-1_{1..3000}	"gi|410171903|ref|XR_171464.1| PREDICTED: Homo sapiens uncharacterized LOC729218 (LOC729218), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171903|ref|XR_171464.1| PREDICTED: Homo sapiens uncharacterized LOC729218 (LOC729218), misc_RNA"	NA	NA	NA	NA	NA	XR_171464.1	NA	NA	NA	NA	NA	Unknown
CUST_37807_PI429285431	5.1253085	P	3.7772248	P	2.54573756084464	0	lncRNA	38900-1_{1..288}	n346322|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1872|NULL|-1.3117700|-0.3868378	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346322|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1872|NULL|-1.3117700|-0.3868378	chr16	 29086351	 29086638	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3494875	4.755041	P	2.6914182	A	4.18034728474012	0	lncRNA	XR_109878	XR_109878	XR_109878	100506748	Hs.355655	LOC100506748	uncharacterized LOC100506748	NA	THC2495612	NA	"PREDICTED: Homo sapiens hypothetical LOC100506748 (LOC100506748), miscRNA [XR_109878]"	chr2:114464807-114464748	hs|2q14.1	Agilent_HUMAN_G3V2	XR_109878	XR_109878	chr2	114464748	114464807	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22415_PI429285431	2.7134495	A	1.0929348	A	3.07484715816368	0	lncRNA	24004-1_{1..1828}	lnc-THEMIS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-THEMIS-1:1	chr6	128752086	128753913	-	lnc-THEMIS-1	lnc-THEMIS-1:1	ENSG00000228972.1	RP1-86D1.2	PTPRK	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10chr6:128742086-128763913"	NA	inner
CUST_51853_PI429285431	17.597559	P	17.597559	P	1	0	lncRNA	55408-1_{1..492}	hg19_lincRNAsTranscripts_TCONS_l2_00013175 range=chr19:50222691-50223369 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013175 range=chr19:50222691-50223369 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 50222691	 50223182	-	NA	NA	NA	NA	CPT1C	NA	chr19:50212691-50216988	inter
LNCA_21_P0009406	3.9472747	P	4.0615807	P	0.923826605236073	0	lncRNA	TCONS_00026069	NA	NA	NA	NA	XLOC_012467	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012467), lincRNA [TCONS_00026069]"	chr17:38277325-38277266	hs|17q21.1	Agilent_HUMAN_G3V2	TCONS_00026069	TCONS_00026069	chr17	 38277266	 38277325	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006854	1.2431296	A	2.1960716	A	0.516577961168939	0	lncRNA	TCONS_00018158	NA	NA	NA	NA	XLOC_008445	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008445), lincRNA [TCONS_00018158]"	chr10:33826014-33826073	hs|10p11.22	Agilent_HUMAN_G3V2	TCONS_00018158	TCONS_00018158	chr10	 33826014	 33826073	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49231_PI429285431	0.92151827	A	0.91946507	A	1.00142418297784	0	lncRNA	53051-1_{1..671}	hg19_lincRNAsTranscripts_TCONS_l2_00020967 range=chr4:189689946-189700434 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020967 range=chr4:189689946-189700434 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	189689946	189690616	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_390_PI429285431	9.068041	P	10.056398	P	0.50405148268819	0	lncRNA	382-1_{1..735}	"transcript_id ""ENST00000446205.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000446205.2"" | genecode_v17"	chr1	142618769	142619503	+	ENSG00000230880.2	ENST00000446205.2	RP11-417J8.3	RP11-417J8.3-002	NA	NA	NA	inter
LNCA_19_P00808384	0.914093	A	0.9510732	A	0.974693007792818	0	lncRNA	TCONS_00012608	NA	NA	NA	NA	XLOC_005479	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005479), lincRNA [TCONS_00012608]"	chr6:138145537-138145596	hs|6q23.3	Agilent_HUMAN_G3V2	TCONS_00012608	TCONS_00012608	chr6	138145537	138145596	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28419_PI429285431	0.92801166	A	0.9938877	A	0.95536502023032	0	lncRNA	30079-1_{1..295}	n325742|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044747|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044747|-1.1423100|-0.4038119	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325742|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044747|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044747|-1.1423100|-0.4038119	chr13	 44123947	 44124241	+	NA	NA	NA	NA	ENOX1	NA	chr13:44113947-44183152	inner
LNCA_23_P256903	3.5108094	P	3.227021	P	1.21738745141948	0	lncRNA	XR_037268	XR_037268	XR_037268	NA	Hs.432355	NA	NA	NA	THC2529603	NA	"PREDICTED: Homo sapiens RAB28, member RAS oncogene family pseudogene (LOC100128416), miscRNA [XR_037268]"	chrX:135930362-135930421	hs|Xq26.3	Agilent_HUMAN_G3V2	XR_037268	XR_037268	chrX	135930362	135930421	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27573_PI429285431	3.703847	P	4.2205696	P	0.69895786794508	0	lncRNA	29151-1_{1..319}	n324774|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206820|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206820|-1.0248200|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324774|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000206820|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000206820|-1.0248200|-1.0000000	chr21	 45622543	 45622861	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010869	0.90810484	A	0.9279031	A	0.986370624491579	0	lncRNA	TCONS_l2_00003529	NA	NA	NA	NA	XLOC_l2_001947	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001947), lincRNA [TCONS_l2_00003529]"	chr10:45731409-45731350	hs|10q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00003529	TCONS_l2_00003529	chr10	 45731350	 45731409	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30127_PI429285431	2.7459197	A	3.126419	A	0.768171689332887	0	lncRNA	31900-1_{1..426}	n334767|AJ132083|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244659|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244659|1.4184100|-0.1379109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334767|AJ132083|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244659|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244659|1.4184100|-0.1379109	chr3	 52394382	 52394807	+	NA	NA	NA	NA	DNAH1	NA	chr3:52384382-52406479	inner
CUST_33251_PI429285431	0.9023688	A	0.9106792	A	0.994256228563273	0	lncRNA	34837-1_{1..1868}	n339955|AK123101|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2406|NULL|2.3273400|-0.1558166	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339955|AK123101|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2406|NULL|2.3273400|-0.1558166	chr10	  7453560	  7455427	+	NA	NA	NA	NA	SFMBT2	NA	chr10:7443560-7453448	inter
LNCA_21_P0004061	2.3818471	A	2.857904	A	0.718939910820612	0	lncRNA	ENST00000514867	NA	NA	NA	NA	XLOC_004544	NA	ENST00000514867	THC2680339	NA	"BROAD Institute lincRNA (XLOC_004544), lincRNA [TCONS_00009508]"	chr5:128078463-128078522	hs|5q23.3	Agilent_HUMAN_G3V2	ENST00000514867	ENST00000514867	chr5	128078463	128078522	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5724_PI429285431	3.2894087	P	2.8362038	A	1.3690782437957	0	lncRNA	5648-1_{1..575}	"transcript_id ""ENST00000582334.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582334.1"" | genecode_v17"	chr17	 10695376	 10695950	+	ENSG00000266114.1	ENST00000582334.1	RP11-963H4.5	RP11-963H4.5-001	NA	NA	NA	inter
CUST_38635_PI429285431	1.3090901	A	0.8903025	A	1.3368036707167	0	lncRNA	39638-1_{1..2548}	n383831|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vvv.2||-0.8878840|-0.2721054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383831|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vvv.2||-0.8878840|-0.2721054	chr2	236916211	236918758	+	NA	NA	NA	NA	AGAP1	NA	chr2:236906211-236928759	inner
LNCA_21_P0002184	2.27932	A	1.9707011	A	1.23852148872523	0	lncRNA	TCONS_00003602	NA	NA	NA	NA	XLOC_001397	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001397), lincRNA [TCONS_00003602]"	chr2:24633370-24633429	hs|2p23.3	Agilent_HUMAN_G3V2	TCONS_00003602	TCONS_00003602	chr2	 24633370	 24633429	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5563_PI429285431	0.89899504	A	0.90035796	A	0.999055741937156	0	lncRNA	5492-1_{1..459}	"transcript_id ""ENST00000562822.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562822.1"" | genecode_v17"	chr16	 56143449	 56143907	+	ENSG00000260041.1	ENST00000562822.1	RP11-355E10.1	RP11-355E10.1-001	NA	NA	NA	inter
LNCA_21_P0008036	0.882851	A	0.8924061	A	0.993398793699137	0	lncRNA	TCONS_00021729	NA	NA	NA	NA	XLOC_010309	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010309), lincRNA [TCONS_00021729]"	chr13:24044785-24056616	hs|13q12.12	Agilent_HUMAN_G3V2	TCONS_00021729	TCONS_00021729	chr13	 24044785	 24056616	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8988_PI429285431	1.277968	A	1.1860404	A	1.06579324911106	0	lncRNA	10520-1_{1..1543}	lnc-FAM100A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM100A-1:1	chr16	  4689785	  4691327	-	lnc-FAM100A-1	lnc-FAM100A-1:1	ENSG00000245125	ENSG00000261442.1	MGRN1	NA	chr16:4679785-4700624	inner
LNCA_21_P0009637	2.8643332	A	3.4613845	P	0.661103794326876	0	lncRNA	TCONS_00026734	NA	NA	NA	NA	XLOC_012879	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012879), lincRNA [TCONS_00026734]"	chr18:71045673-71045614	hs|18q22.3	Agilent_HUMAN_G3V2	TCONS_00026734	TCONS_00026734	chr18	 71045614	 71045673	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001351	1.8718501	A	2.5537863	A	0.623328161838527	0	lncRNA	TCONS_00001055	NA	NA	NA	NA	XLOC_000313	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000313), lincRNA [TCONS_00001055]"	chr1:96986849-96986908	hs|1p21.3	Agilent_HUMAN_G3V2	TCONS_00001055	TCONS_00001055	chr1	 96986849	 96986908	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32485_PI429285431	1.3575653	A	0.967001	A	1.31090605525869	0	lncRNA	34154-1_{1..899}	n339090|AY245869|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1520|NULL|-1.0472200|-0.1260085	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339090|AY245869|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1520|NULL|-1.0472200|-0.1260085	chr2	201645217	201646115	-	NA	NA	NA	NA	BZW1	NA	chr2:201676269-201686893	inter
CUST_27214_PI429285431	6.521201	P	6.4181595	P	1.07403536645609	0	lncRNA	28757-1_{1..404}	n324347|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042613|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042613|-1.1692100|-0.3090219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324347|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042613|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042613|-1.1692100|-0.3090219	chr6	148038903	148039306	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-28.00;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.60;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30"	NA	inter
LNCA_21_P0006040	0.8772308	A	1.6215276	A	0.596958770914053	0	lncRNA	ENST00000415465	NA	NA	NA	NA	XLOC_007515	NA	ENST00000415465	NA	NA	"BROAD Institute lincRNA (XLOC_007515), lincRNA [TCONS_00015734]"	chr9:111465243-111465302	hs|9q31.3	Agilent_HUMAN_G3V2	ENST00000415465	ENST00000415465	chr9	111465243	111465302	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26367_PI429285431	4.8179173	P	4.106345	P	1.63758784601472	0	lncRNA	27874-1_{1..1297}	lnc-C1orf138-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C1orf138-1:1	chr1	150530315	150531611	-	lnc-C1orf138-1	lnc-C1orf138-1:1	ENSG00000237781.1	RP11-54A4.2	ADAMTSL4	"hg19_refFlat_ADAMTSL4:range=chr1:150524765-1505312005'pad=0,hg19_refFlat_ADAMTSL4:range=chr1:150524765-1505312005'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.70;hg19_refFlat_ADAMTSL4:range=chr1:150524765-1505326725'pad=0,hg19_refFlat_ADAMTSL4:range=chr1:150524765-1505326725'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.70chr1:150521898-150533413"	NA	inner
CUST_32165_PI429285431	5.7122316	P	5.831535	P	0.920632067134995	0	lncRNA	33865-1_{1..815}	n338736|BC030118|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1156|NULL|-1.3845600|-0.3318487	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n338736|BC030118|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1156|NULL|-1.3845600|-0.3318487	chr13	 52027479	 52028293	+	NA	NA	NA	NA	INTS6	NA	chr13:52017479-52027275	inter
CUST_30570_PI429285431	13.344868	P	13.989136	P	0.63981734120896	0	lncRNA	32352-1_{1..229}	n335777|X14676|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321446|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321446|0.3889500|-0.0070397	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335777|X14676|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321446|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321446|0.3889500|-0.0070397	chr22	 23524231	 23524459	+	NA	NA	NA	NA	BCR	NA	chr22:23522552-23606020	inner
CUST_8600_PI429285431	1.1954614	A	1.9313815	A	0.600434966387134	0	lncRNA	10155-2_{3001..3775}	lnc-BRD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-BRD1-2:1	chr22	 50120159	 50120933	-	lnc-BRD1-2	lnc-BRD1-2:1	ENSG00000226954	XLOC_014412	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90"	NA	inter
LNCA_19_P00321089	5.080383	P	5.277974	P	0.872005415589504	0	lncRNA	AK057050	NA	AK057050	NA	NA	XLOC_l2_015037	NA	NA	THC2500019	NA	"BROAD Institute lincRNA (XLOC_l2_015037), lincRNA [TCONS_l2_00029075]"	chr9:132269075-132269134	hs|9q34.11	Agilent_HUMAN_G3V2	AK057050	AK057050	chr9	132269075	132269134	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42846_PI429285431	9.536134	P	9.6112585	P	0.949260199275452	0	lncRNA	45888-1_{1..126}	ENST00000384323 ncrna:snoRNA chromosome:GRCh37:13:27829538:27829663:1 gene:ENSG00000207051 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384323 ncrna:snoRNA chromosome:GRCh37:13:27829538:27829663:1 gene:ENSG00000207051 gene_biotype:snoRNA transcript_biotype:snoRNA	chr13	 27829538	 27829663	+	ENSG00000207051	ENST00000384323	NA	NA	RPL21	NA	chr13:27825692-27830705	inter
CUST_10562_PI429285431	9.167643	P	9.820282	P	0.636115656219132	0	lncRNA	12093-1_{1..324}	lnc-SALL3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SALL3-2:1	chr18	 76400807	 76401130	+	lnc-SALL3-2	lnc-SALL3-2:1	XLOC_012732	linc-SALL3-2	NA	NA	NA	inter
CUST_18659_PI429285431	0.9039558	A	0.9017547	A	1.00152685071053	0	lncRNA	20361-2_{3001..3615}	lnc-FAM75A6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-FAM75A6-3:1	chr9	 44263422	 44264036	-	lnc-FAM75A6-3	lnc-FAM75A6-3:1	ENSG00000233424	RP11-175I6.5	NA	NA	NA	inter
CUST_6805_PI429285431	1.515708	A	1.1076189	A	1.32692708830573	0	lncRNA	6753-1_{1..897}	"transcript_id ""ENST00000420255.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420255.1"" | genecode_v17"	chr21	 23381477	 23382373	-	ENSG00000233215.1	ENST00000420255.1	AP000472.2	AP000472.2-001	NA	NA	NA	inter
CUST_7098_PI429285431	4.674258	P	4.3270535	P	1.27209331140826	0	lncRNA	7033-1_{1..751}	"transcript_id ""ENST00000602420.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602420.1"" | genecode_v17"	chrX	 73289193	 73289943	-	ENSG00000230590.3	ENST00000602420.1	FTX	FTX-008	LOC100506745	"hg19_refFlat_AARSD1:range=chr17:41102610-411164575'pad=0,hg19_refFlat_AARSD1:range=chr17:41102610-411164575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PTGES3L-AARSD1:range=chr17:41102610-411321995'pad=0,hg19_refFlat_PTGES3L-AARSD1:range=chr17:41102610-411321995'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PTGES3L-AARSD1:range=chr17:41102610-411316345'pad=0,hg19_refFlat_PTGES3L-AARSD1:range=chr17:41102610-411316345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40chrX:73280376-73286133"	NA	inter
CUST_12861_PI429285431	0.8719228	A	0.8732509	A	0.999079854822937	0	lncRNA	14488-1_{1..1646}	lnc-CAPN13-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CAPN13-2:2	chr2	 30570899	 30572544	-	lnc-CAPN13-2	lnc-CAPN13-2:2	XLOC_002041	linc-ALK-2	NA	NA	NA	inter
CUST_38694_PI429285431	5.2547226	P	4.9567356	P	1.2294277889374	0	lncRNA	39690-1_{1..2113}	n384091|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zsc.3||7.6006000|-0.0945590	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384091|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zsc.3||7.6006000|-0.0945590	chr22	 20383730	 20385842	-	NA	NA	NA	NA	TMEM191B	NA	chr22:20373730-20380440	inter
CUST_219_PI429201921	3.7548003	P	3.6663857	P	1.06320117195903	0	lncRNA	172-2_{3001..5670}	TC07002292.hg.1	TCONS_l2_00025845-XLOC_l2_013381 // Broad TUCP // linc-IGFBP1-3 chr7:+:45808704-45814375 // chr7 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00025846-XLOC_l2_013381 // Broad TUCP // linc-IGFBP1-3 chr7:+:45808732-45813411 // chr7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr7:+:45808704-45814375	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00025845-XLOC_l2_013381	linc-IGFBP1-3	chr7	 45808704	 45814375	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012857	0.9143126	A	2.518513	A	0.328917939180005	0	lncRNA	THC2690582	NA	NA	NA	NA	XLOC_l2_011798	NA	NA	THC2690582	NA	"BROAD Institute lincRNA (XLOC_l2_011798), lincRNA [TCONS_l2_00022565]"	chr5:142146038-142146097	hs|5q31.3	Agilent_HUMAN_G3V2	THC2690582	THC2690582	chr5	142146038	142146097	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24725_PI429285431	0.9044622	A	0.9021746	A	1.00158690128761	0	lncRNA	26271-1_{1..396}	lnc-OSGIN1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OSGIN1-1:5	chr16	 83982642	 83983037	+	lnc-OSGIN1-1	lnc-OSGIN1-1:5	ENSG00000260300.1	RP11-505K9.4	OSGIN1	NA	chr16:83982672-83992719	inter
CUST_33888_PI429285431	0.92130005	A	0.9946039	A	0.950458901365474	0	lncRNA	35431-1_{1..535}	n340679|L38936|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3142|NULL|-1.1100400|-0.3035448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340679|L38936|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3142|NULL|-1.1100400|-0.3035448	chr17	 40750660	 40751194	+	NA	NA	NA	NA	FAM134C	NA	chr17:40740660-40761195	inter
CUST_31182_PI429285431	0.9007028	A	0.90754205	A	0.995270612086832	0	lncRNA	32977-1_{1..543}	n337622|AX801696|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1|NULL|0.2637120|-0.2356530	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337622|AX801696|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1|NULL|0.2637120|-0.2356530	chrX	  2951276	  2951818	+	NA	NA	NA	NA	ARSF	NA	chrX:2958275-2961819	inner
LNCA_21_P0002397	0.90721834	A	0.9268226	A	0.986503271213284	0	lncRNA	TCONS_00004125	NA	NA	NA	NA	XLOC_001971	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001971), lincRNA [TCONS_00004125]"	chr2:8007606-8007547	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_00004125	TCONS_00004125	chr2	  8007547	  8007606	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38443_PI429285431	9.054434	P	9.595548	P	0.68724004077179	0	lncRNA	39467-2_{3001..3356}	n382689|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bka.3||1.8411900|-0.1100132	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n382689|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bka.3||1.8411900|-0.1100132	chr15	 84870599	 84870954	-	NA	NA	NA	NA	NA	"hg19_refFlat_DNM1:range=chr9:130965750-1310154015'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310154015'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50"	NA	inter
CUST_22435_PI429285431	0.916803	A	0.950019	A	0.977239443372132	0	lncRNA	24023-1_{1..730}	lnc-ALDH7A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALDH7A1-1:1	chr5	125825971	125826700	-	lnc-ALDH7A1-1	lnc-ALDH7A1-1:1	ENSG00000250602.1	RP11-517I3.1	GRAMD3	"hg19_refFlat_GRAMD3:range=chr5:125696024-1258286485'pad=0,hg19_refFlat_GRAMD3:range=chr5:125696024-1258286485'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_GRAMD3:range=chr5:125759318-1258286485'pad=0,hg19_refFlat_GRAMD3:range=chr5:125759318-1258286485'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_GRAMD3:range=chr5:125801083-1258286485'pad=0,hg19_refFlat_GRAMD3:range=chr5:125801083-1258286485'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_GRAMD3:range=chr5:125801235-1258286485'pad=0,hg19_refFlat_GRAMD3:range=chr5:125801235-1258286485'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_GRAMD3:range=chr5:125759299-1258286485'pad=0,hg19_refFlat_GRAMD3:range=chr5:125759299-1258286485'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90chr5:125815971-125829853"	NA	inner
LNCA_21_P0007982	5.864035	P	6.041446	P	0.884288480254832	0	lncRNA	ENST00000417079	NA	NA	NA	NA	XLOC_010556	NA	ENST00000417079	NA	NA	"BROAD Institute lincRNA (XLOC_010556), lincRNA [TCONS_00021621]"	chr13:30916661-30916602	hs|13q12.3	Agilent_HUMAN_G3V2	ENST00000417079	ENST00000417079	chr13	 30916602	 30916661	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44934_PI429285431	10.316181	P	10.883051	P	0.675079820678414	0	lncRNA	49446-1_{1..1545}	"gi|212286157|ref|NR_024116.2| Homo sapiens RAS p21 protein activator 4C, pseudogene (RASA4CP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|212286157|ref|NR_024116.2| Homo sapiens RAS p21 protein activator 4C, pseudogene (RASA4CP), non-coding RNA"	Chr7	 44068486	 44070030	-	401331	NR_024116.2	NA	NA	NA	NA	NA	inter
CUST_20849_PI429285431	0.8924252	A	0.8906418	A	1.00123692304088	0	lncRNA	22480-1_{1..415}	lnc-HPS3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-HPS3-1:1	chr3	148820374	148820788	+	lnc-HPS3-1	lnc-HPS3-1:1	ENSG00000239718.1	HLTF-AS1	NA	NA	NA	inter
LNCA_33_P3232393	7.7975597	P	7.4236016	P	1.29590332813896	0	lncRNA	XR_109738	XR_109738	XR_109738	100128818	Hs.689631	LOC100128818	LPEQ6126	NA	NP862638	GO:0005576	"PREDICTED: Homo sapiens LPEQ6126 (LOC100128818), miscRNA [XR_109738]"	chr22:47512183-47512124	hs|22q13.31	Agilent_HUMAN_G3V2	XR_109738	XR_109738	chr22	 47512124	 47512183	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001247	0.88267106	A	1.1495136	A	0.831136569344731	0	lncRNA	ENST00000442410	NA	NA	NA	NA	XLOC_001274	NA	ENST00000442410	NA	NA	"BROAD Institute lincRNA (XLOC_001274), lincRNA [TCONS_00000769]"	chr1:239433143-239433084	hs|1q43	Agilent_HUMAN_G3V2	ENST00000442410	ENST00000442410	chr1	239433084	239433143	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005583	3.2258952	P	3.4092693	P	0.880640988707896	0	lncRNA	TCONS_00014231	NA	NA	NA	NA	XLOC_006288	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006288), lincRNA [TCONS_00014231]"	chr7:149253521-149294581	hs|7q36.1	Agilent_HUMAN_G3V2	TCONS_00014231	TCONS_00014231	chr7	149253521	149294581	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004222	0.8769364	A	0.8797896	A	0.998024266799853	0	lncRNA	TCONS_00009863	NA	NA	NA	NA	XLOC_004277	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004277), lincRNA [TCONS_00009863]"	chr5:7318314-7318373	hs|5p15.31	Agilent_HUMAN_G3V2	TCONS_00009863	TCONS_00009863	chr5	  7318314	  7318373	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20666_PI429285431	2.763677	A	3.0248246	A	0.834423908109984	0	lncRNA	22305-1_{1..630}	lnc-STX3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STX3-1:1	chr11	 59442870	 59443499	+	lnc-STX3-1	lnc-STX3-1:1	ENSG00000255355.1	AP000640.2	PATL1	"hg19_refFlat_TIGD1:range=chr2:233412817-2334145925'pad=0,hg19_refFlat_TIGD1:range=chr2:233412817-2334145925'pad=0 3'pad=0 strand=- repeatMasking=none,-64.60chr11:59432870-59436511"	NA	inter
CUST_42386_PI429285431	0.88705444	A	1.3791901	A	0.710971847799149	0	lncRNA	45075-1_{1..72}	ENST00000459551 ncrna:snoRNA chromosome:GRCh37:8:41901022:41901093:-1 gene:ENSG00000238966 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459551 ncrna:snoRNA chromosome:GRCh37:8:41901022:41901093:-1 gene:ENSG00000238966 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	 41901022	 41901093	-	ENSG00000238966	ENST00000459551	NA	NA	KAT6A	NA	chr8:41891022-41909505	inner
CUST_43302_PI429285431	1.1734284	A	0.8903838	A	1.21675997341367	0	lncRNA	48120-1_{1..3000}	ENST00000562691 havana:sense_overlapping chromosome:GRCh37:12:14915438:14920865:-1 gene:ENSG00000261324 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000562691 havana:sense_overlapping chromosome:GRCh37:12:14915438:14920865:-1 gene:ENSG00000261324 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	chr12	 14915438	 14918437	-	ENSG00000261324	ENST00000562691	NA	NA	H2AFJ	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.10;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-34.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70chr12:14927270-14930865"	NA	inter
CUST_17731_PI429285431	0.95299244	A	0.8824252	A	1.05012949322463	0	lncRNA	19463-1_{1..348}	lnc-SMOC2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMOC2-6:1	chr6	169423677	169424024	+	lnc-SMOC2-6	lnc-SMOC2-6:1	XLOC_005550	linc-C6orf120-5	NA	NA	NA	inter
CUST_16251_PI429285431	3.5293722	P	3.8486109	P	0.801492708067849	0	lncRNA	17955-2_{3001..5836}	lnc-SLC39A11-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC39A11-3:4	chr17	 70036431	 70039266	-	lnc-SLC39A11-3	lnc-SLC39A11-3:4	XLOC_012564	linc-ABCA5-7	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90"	NA	inter
LNCA_21_P0002364	5.0000296	P	5.2500205	P	0.840901719341755	0	lncRNA	TCONS_00004041	NA	NA	NA	NA	XLOC_001880	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001880), lincRNA [TCONS_00004041]"	chr2:223637243-223637302	hs|2q36.1	Agilent_HUMAN_G3V2	TCONS_00004041	TCONS_00004041	chr2	223637243	223637302	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_163_PI429285431	0.9035538	A	1.1630203	A	0.835396787053021	0	lncRNA	154-1_{1..579}	"transcript_id ""ENST00000447908.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447908.1"" | genecode_v17"	chr1	 14675450	 14676028	-	ENSG00000234593.1	ENST00000447908.1	RP4-704D23.1	RP4-704D23.1-001	NA	NA	NA	inter
CUST_45458_PI429285431	0.8898412	A	0.8796032	A	1.00712168023882	0	lncRNA	49874-1_{1..1054}	"gi|397139955|ref|XR_158975.1| PREDICTED: Homo sapiens retinoblastoma-specific gene 2 (RBSG2), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139955|ref|XR_158975.1| PREDICTED: Homo sapiens retinoblastoma-specific gene 2 (RBSG2), misc_RNA"	NA	NA	NA	NA	NA	XR_158975.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002988	3.2103767	P	1.6213193	A	3.00852719960937	0	lncRNA	TCONS_00006111	NA	NA	NA	NA	XLOC_002720	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002720), lincRNA [TCONS_00006111]"	chr3:83281586-83281645	hs|3p12.2	Agilent_HUMAN_G3V2	TCONS_00006111	TCONS_00006111	chr3	 83281586	 83281645	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51587_PI429285431	4.0426326	P	4.135784	P	0.93747271058065	0	lncRNA	55152-1_{1..233}	hg19_lincRNAsTranscripts_TCONS_l2_00010617 range=chr17:20624773-20628205 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010617 range=chr17:20624773-20628205 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 20624773	 20625005	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29530_PI429285431	2.9876375	P	3.4958174	P	0.703108918792029	0	lncRNA	31289-1_{1..473}	n332994|AF140342|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071136|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071136|2.0843500|-0.0920214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332994|AF140342|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000071136|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000071136|2.0843500|-0.0920214	chr19	  1043042	  1043514	+	NA	NA	NA	NA	ABCA7	NA	chr19:1040102-1053850	inner
CUST_28481_PI429285431	10.865119	P	10.651805	P	1.15934825452466	0	lncRNA	30148-1_{1..369}	n325823|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000104868|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000104868|-1.1472700|-0.1966241	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325823|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000104868|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000104868|-1.1472700|-0.1966241	chr11	116015406	116015774	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001487	0.8734319	A	0.8743708	A	0.999349415833884	0	lncRNA	TCONS_00001446	NA	NA	NA	NA	XLOC_000768	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000768), lincRNA [TCONS_00001446]"	chr1:31168574-31168515	hs|1p35.2	Agilent_HUMAN_G3V2	TCONS_00001446	TCONS_00001446	chr1	 31168515	 31168574	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2439_PI429285431	0.8769533	A	0.876807	A	1.00010141257442	0	lncRNA	2431-1_{1..558}	"transcript_id ""ENST00000503317.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503317.1"" | genecode_v17"	chr5	173756615	173757172	+	ENSG00000249722.1	ENST00000503317.1	CTC-430J12.2	CTC-430J12.2-001	NA	NA	NA	inter
CUST_16837_PI429285431	1.1145858	A	2.6703126	A	0.340157121811949	0	lncRNA	18544-1_{1..621}	lnc-TMEM100-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM100-1:1	chr17	 53666968	 53667588	-	lnc-TMEM100-1	lnc-TMEM100-1:1	XLOC_012526	linc-MMD-2	NA	NA	NA	inter
CUST_8936_PI429285431	1.502643	A	1.0186412	A	1.39861782774378	0	lncRNA	10471-1_{1..418}	lnc-TRIML1-3:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRIML1-3:11	chr4	189601875	189602292	+	lnc-TRIML1-3	lnc-TRIML1-3:11	ENSG00000249378	RP11-219G10.3	NA	NA	NA	inter
CUST_36803_PI429285431	0.89502096	A	0.9061715	A	0.99230082628778	0	lncRNA	37975-1_{1..1533}	n345282|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_831|NULL|-1.2960400|-0.2864266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345282|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_831|NULL|-1.2960400|-0.2864266	chr14	 97928140	 97929672	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.26;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.10"	NA	inter
CUST_15827_PI429285431	1.2130716	A	1.1297512	A	1.05945359662932	0	lncRNA	17517-1_{1..1239}	lnc-IFITM2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IFITM2-4:1	chr11	   332703	   333941	+	lnc-IFITM2-4	lnc-IFITM2-4:1	XLOC_009016	linc-B4GALNT4-2	NA	NA	NA	inter
CUST_3640_PI429285431	0.9050635	A	0.91374993	A	0.993997115278946	0	lncRNA	3609-2_{3001..3991}	"transcript_id ""ENST00000443246.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443246.2"" | genecode_v17"	chr10	 29081117	 29082107	-	ENSG00000235824.2	ENST00000443246.2	LINC00837	LINC00837-001	NA	NA	NA	inter
CUST_289_PI429201921	1.0927744	A	1.6480057	A	0.68054794069313	0	lncRNA	203-3_{6001..7104}	TC08001782.hg.1	TCONS_l2_00028459-XLOC_l2_014099 // Broad TUCP // linc-DEFB105B-5 chr8:+:7170367-7177472 // chr8 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr8:+:7170367-7177472	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00028459-XLOC_l2_014099	linc-DEFB105B-5	chr8	  7170367	  7177472	+	NA	NA	NA	NA	NFYC	NA	chr1:41157242-41163260	Unknown
CUST_28732_PI429285431	0.91732734	A	0.92173594	A	0.996948855570859	0	lncRNA	30432-1_{1..430}	n326125|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046433|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046433|-1.0114800|-0.3469526	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326125|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046433|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046433|-1.0114800|-0.3469526	chr10	  2104123	  2104552	+	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50"	NA	inter
CUST_32951_PI429285431	0.9122302	A	1.169239	A	0.836821138313953	0	lncRNA	34571-1_{1..1857}	n339626|CR610740|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2070|NULL|-0.7265450|-0.1528869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339626|CR610740|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2070|NULL|-0.7265450|-0.1528869	chr20	 31097809	 31099665	+	NA	NA	NA	NA	LOC100506597	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_C20orf112:range=chr20:31035399-311726925'pad=0,hg19_refFlat_C20orf112:range=chr20:31035399-311726925'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00chr20:31087809-31109666"	NA	inner
CUST_8574_PI429285431	1.2559009	A	0.9164953	A	1.26523520120912	0	lncRNA	10132-1_{1..571}	lnc-AP4B1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AP4B1-1:2	chr1	114471848	114472418	-	lnc-AP4B1-1	lnc-AP4B1-1:2	ENSG00000235527	RP5-1073O3.7	HIPK1	NA	chr1:114471996-114481940	inter
CUST_11425_PI429285431	1.60262	A	2.2178843	A	0.652810288527676	0	lncRNA	12993-1_{1..236}	lnc-QKI-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-QKI-3:1	chr6	164429556	164429791	+	lnc-QKI-3	lnc-QKI-3:1	XLOC_005532	linc-FGFR1OP-8	NA	NA	NA	inter
CUST_30942_PI429285431	4.179845	P	4.4738297	P	0.815646143344359	0	lncRNA	32730-1_{1..269}	n337041|DQ123826|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341910_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341910_03|0.8537640|-0.0375636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337041|DQ123826|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341910_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341910_03|0.8537640|-0.0375636	chr6	 31540750	 31541018	+	NA	NA	NA	NA	TNF	NA	chr6:31543350-31546112	inner
LNCA_21_P0007764	1.8144588	A	0.9162532	A	1.86374644416659	0	lncRNA	TCONS_00020934	NA	NA	NA	NA	XLOC_010205	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010205), lincRNA [TCONS_00020934]"	chr12:115135017-115134958	hs|12q24.21	Agilent_HUMAN_G3V2	TCONS_00020934	TCONS_00020934	chr12	115134958	115135017	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_877_PI429285431	0.899805	A	0.8949681	A	1.00335831012754	0	lncRNA	867-1_{1..499}	"transcript_id ""ENST00000416262.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416262.1"" | genecode_v17"	chr2	 51429219	 51429717	-	ENSG00000237374.1	ENST00000416262.1	AC007680.2	AC007680.2-001	NA	NA	NA	inter
CUST_18820_PI429285431	3.7434096	P	3.402939	A	1.26616954487002	0	lncRNA	20514-1_{1..2285}	lnc-GTF2F2-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2F2-2:10	chr13	 45965167	 45967451	+	lnc-GTF2F2-2	lnc-GTF2F2-2:10	ENSG00000170919	XXyac-R12DG2.2	SLC25A30	"hg19_refFlat_RCN1:range=chr11:32112743-321260185'pad=0,hg19_refFlat_RCN1:range=chr11:32112743-321260185'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.80;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20chr13:45967451-45975872"	NA	inter
LNCA_21_P0010958	1.4551692	A	2.310184	A	0.552859655076998	0	lncRNA	AF086154	NA	AF086154	NA	Hs.142505	XLOC_l2_002171	NA	NA	THC2655349	NA	"BROAD Institute lincRNA (XLOC_l2_002171), lincRNA [TCONS_l2_00004301]"	chr10:134331602-134325611	hs|10q26.3	Agilent_HUMAN_G3V2	AF086154	AF086154	chr10	134325611	134331602	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13739_PI429285431	1.6038007	A	1.4303391	A	1.12776118921778	0	lncRNA	15382-1_{1..357}	lnc-MAGEE2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAGEE2-1:1	chrX	 75367988	 75368344	-	lnc-MAGEE2-1	lnc-MAGEE2-1:1	XLOC_008190	linc-MAGEE2	NA	NA	NA	inter
CUST_51801_PI429285431	0.88955754	A	0.89376974	A	0.997084583550695	0	lncRNA	55350-1_{1..2698}	hg19_lincRNAsTranscripts_TCONS_l2_00012383 range=chr19:20408538-20416213 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012383 range=chr19:20408538-20416213 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 20408538	 20411235	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47448_PI429285431	0.9033858	A	1.8281778	A	0.526756457411703	0	lncRNA	51480-1_{1..2632}	"gi|224451064|ref|NR_027051.1| Homo sapiens THAP7 antisense RNA 1 (THAP7-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224451064|ref|NR_027051.1| Homo sapiens THAP7 antisense RNA 1 (THAP7-AS1), transcript variant 1, non-coding RNA"	Chr22	 21356211	 21358842	+	439931	NR_027051.1	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBA3C:range=chr13:19748003-197558875'pad=0,hg19_refFlat_TUBA3C:range=chr13:19748003-197558875'pad=0 3'pad=0 strand=- repeatMasking=none,-94.10;hg19_refFlat_TUBA3D:range=chr2:132233773-1322404215'pad=0,hg19_refFlat_TUBA3D:range=chr2:132233773-1322404215'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_TUBA3E:range=chr2:130949404-1309559335'pad=0,hg19_refFlat_TUBA3E:range=chr2:130949404-1309559335'pad=0 3'pad=0 strand=- repeatMasking=none,-94.10"	NA	inter
CUST_45376_PI429285431	0.90695024	A	0.91928613	A	0.991485864928829	0	lncRNA	49810-1_{1..477}	"gi|397139333|ref|XR_158847.1| PREDICTED: Homo sapiens uncharacterized LOC100996508 (LOC100996508), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139333|ref|XR_158847.1| PREDICTED: Homo sapiens uncharacterized LOC100996508 (LOC100996508), misc_RNA"	NA	NA	NA	NA	NA	XR_158847.1	NA	NA	NA	NA	NA	Unknown
CUST_51588_PI429285431	0.906484	A	0.9089629	A	0.998283232787719	0	lncRNA	55153-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00010618 range=chr17:20628944-20644030 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010618 range=chr17:20628944-20644030 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 20628944	 20631943	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22299_PI429285431	6.1502967	P	6.682219	P	0.691632563128033	0	lncRNA	23899-1_{1..963}	lnc-NGFR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NGFR-1:1	chr17	 47482139	 47483101	+	lnc-NGFR-1	lnc-NGFR-1:1	ENSG00000250186.3	RP11-1079K10.4	PHB	"hg19_refFlat_PHB:range=chr17:47482354-474906265'pad=0,hg19_refFlat_PHB:range=chr17:47482354-474906265'pad=0 3'pad=0 strand=- repeatMasking=none,-101.00chr17:47477791-47492242"	NA	inner
CUST_30747_PI429285431	4.9726095	P	5.2045937	P	0.85146303268725	0	lncRNA	32532-1_{1..219}	n336551|Z11402|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326350|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326350|-0.9618020|-0.2327123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336551|Z11402|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326350|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326350|-0.9618020|-0.2327123	chr7	 38289104	 38289322	-	NA	NA	NA	NA	TARP	NA	chr7:38295938-38313248	inner
LNCA_21_P0010124	3.2595484	P	3.8699262	P	0.655025147374058	0	lncRNA	TCONS_00028710	NA	NA	NA	NA	XLOC_013812	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013812), lincRNA [TCONS_00028710]"	chr20:55861555-55851144	hs|20q13.31	Agilent_HUMAN_G3V2	TCONS_00028710	TCONS_00028710	chr20	 55851144	 55861555	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006768	1.3610369	A	0.889197	A	1.38687705487314	0	lncRNA	BC050028	NA	BC050028	NA	Hs.463900	XLOC_008839	NA	NA	THC2530878	NA	"BROAD Institute lincRNA (XLOC_008839), lincRNA [TCONS_00017990]"	chr10:66663150-66663091	hs|10q21.3	Agilent_HUMAN_G3V2	BC050028	BC050028	chr10	 66663091	 66663150	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28159_PI429285431	1.3076551	A	1.1513251	A	1.11444853903153	0	lncRNA	29786-1_{1..399}	n325438|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324045|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324045|-1.3066600|-0.2933066	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325438|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324045|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324045|-1.3066600|-0.2933066	chr2	 11456630	 11457028	+	NA	NA	NA	NA	ROCK2	NA	chr2:11446630-11469835	inner
LNCA_21_P0011233	2.0885465	A	2.4425418	A	0.78241433067531	0	lncRNA	ENST00000435885	NA	NA	NA	NA	XLOC_l2_004081	NA	ENST00000435885	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004081), lincRNA [TCONS_l2_00007598]"	chr13:100143599-100143540	hs|13q32.3	Agilent_HUMAN_G3V2	ENST00000435885	ENST00000435885	chr13	100143540	100143599	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47867_PI429285431	8.310064	P	7.162967	P	2.21467806845519	0	lncRNA	51766-3_{6001..7538}	"gi|410171204|ref|XR_171193.1| PREDICTED: Homo sapiens myomegalin-like (LOC101060463), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171204|ref|XR_171193.1| PREDICTED: Homo sapiens myomegalin-like (LOC101060463), misc_RNA"	NA	NA	NA	NA	NA	XR_171193.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007803	6.006715	P	6.4898677	P	0.715412534184141	0	lncRNA	TCONS_00020997	NA	NA	NA	NA	XLOC_010261	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010261), lincRNA [TCONS_00020997]"	chr12:130552927-130552751	hs|12q24.33	Agilent_HUMAN_G3V2	TCONS_00020997	TCONS_00020997	chr12	130552751	130552927	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20888_PI429285431	5.902301	P	6.3195586	P	0.748846745157899	0	lncRNA	22520-1_{1..363}	lnc-POLR1E-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POLR1E-3:1	chr9	 37433831	 37434193	+	lnc-POLR1E-3	lnc-POLR1E-3:1	ENSG00000250559.1	RP11-397D12.6	ZBTB5	NA	chr9:37438099-37443871	inner
CUST_38252_PI429285431	6.752658	P	7.0975323	P	0.787376576599909	0	lncRNA	39310-1_{1..245}	n381776|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pqd.2||1.4154400|-0.1339561	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381776|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pqd.2||1.4154400|-0.1339561	chr11	117007261	117007505	+	NA	NA	NA	NA	PAFAH1B2	NA	chr11:117015000-117018583	inter
CUST_33722_PI429285431	1.4666501	A	0.8921776	A	1.48913288426293	0	lncRNA	35281-1_{1..1106}	n340500|BC016740|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2962|NULL|2.0483100|-0.3718256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340500|BC016740|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2962|NULL|2.0483100|-0.3718256	chr5	 73248764	 73249869	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31758_PI429285431	4.8180285	P	3.2644515	P	2.93544047104334	0	lncRNA	33498-1_{1..1853}	n338297|BC039426|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|691|NULL|-0.9137190|-0.3550853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338297|BC039426|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|691|NULL|-0.9137190|-0.3550853	chr1	159994742	159996594	-	NA	NA	NA	NA	PIGM	NA	chr1:159997462-160001783	inter
CUST_16761_PI429285431	12.496224	P	12.510684	P	0.990027153718758	0	lncRNA	18469-1_{1..419}	lnc-KIF25-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIF25-2:2	chr6	168631587	168632005	+	lnc-KIF25-2	lnc-KIF25-2:2	XLOC_005544	linc-SMOC2-3	NA	NA	NA	inter
LNCA_21_P0009775	2.907571	P	1.6475048	A	2.39506730759725	0	lncRNA	TCONS_00027419	NA	NA	NA	NA	XLOC_013407	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013407), lincRNA [TCONS_00027419]"	chr19:55025440-55025381	hs|19q13.42	Agilent_HUMAN_G3V2	TCONS_00027419	TCONS_00027419	chr19	 55025381	 55025440	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011427	0.87563264	A	0.87020665	A	1.00376809114216	0	lncRNA	TCONS_l2_00009676	NA	NA	NA	NA	XLOC_l2_005179	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005179), lincRNA [TCONS_l2_00009676]"	chr16:31723382-31723441	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00009676	TCONS_l2_00009676	chr16	 31723382	 31723441	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31771_PI429285431	1.7330265	A	0.87892115	A	1.80763744789243	0	lncRNA	33512-1_{1..1739}	n338313|CR608740|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|707|NULL|-0.2400820|-0.1823636	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338313|CR608740|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|707|NULL|-0.2400820|-0.1823636	chr19	 12305852	 12307590	+	NA	NA	NA	NA	ZNF136	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF57:range=chr19:2901044-29182875'pad=0,hg19_refFlat_ZNF57:range=chr19:2901044-29182875'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF555:range=chr19:2841571-28539505'pad=0,hg19_refFlat_ZNF555:range=chr19:2841571-28539505'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF709:range=chr19:12574810-125954715'pad=0,hg19_refFlat_ZNF709:range=chr19:12574810-125954715'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90chr19:12295852-12300064"	NA	inter
LNCA_21_P0003351	0.8766969	A	0.87223697	A	1.00309617117229	0	lncRNA	ENST00000503465	NA	NA	NA	NA	XLOC_003509	NA	ENST00000503465	NA	NA	"BROAD Institute lincRNA (XLOC_003509), lincRNA [TCONS_00007514]"	chr4:38387312-38387371	hs|4p14	Agilent_HUMAN_G3V2	ENST00000503465	ENST00000503465	chr4	 38387312	 38387371	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11686_PI429285431	0.8996967	A	0.8883994	A	1.00786143169498	0	lncRNA	13264-1_{1..1722}	lnc-SEMA6C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SEMA6C-2:1	chr1	151122441	151124162	-	lnc-SEMA6C-2	lnc-SEMA6C-2:1	XLOC_001025	linc-SEMA6C	TNFAIP8L2-SCNM1	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10chr1:151129105-151133810"	NA	inter
CUST_7226_PI429285431	8.5229435	P	8.687039	P	0.892487890785634	0	lncRNA	7735-1_{1..273}	"transcript_id ""ENST00000481442.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000481442.2"" | genecode_v17"	chr5	159718795	159719067	+	ENSG00000243654.2	ENST00000481442.2	RN7SL295P	RN7SL295P-201	CCNJL	NA	chr5:159708795-159729067	inner
CUST_5261_PI429285431	7.1857796	P	7.5305905	P	0.787411179042166	0	lncRNA	5201-1_{1..556}	"transcript_id ""ENST00000568836.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568836.1"" | genecode_v17"	chr15	 80458265	 80458820	+	ENSG00000259967.1	ENST00000568836.1	RP11-2E17.2	RP11-2E17.2-001	FAH	NA	chr15:80448265-80469322	inner
CUST_16592_PI429285431	7.3065577	P	7.2839365	P	1.01580339441908	0	lncRNA	18293-1_{1..1110}	lnc-TMEM116-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM116-2:9	chr12	112279488	112280597	-	lnc-TMEM116-2	lnc-TMEM116-2:9	XLOC_010202	linc-BRAP-2	MAPKAPK5	"hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70chr12:112280279-112289749"	NA	inter
CUST_37176_PI429285431	0.92806745	A	0.923257	A	1.00333991498284	0	lncRNA	38291-1_{1..2471}	n345610|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1159|NULL|-1.3225500|-0.2934185	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345610|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1159|NULL|-1.3225500|-0.2934185	chr3	187548314	187550784	+	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20"	NA	inter
CUST_17229_PI429285431	1.649029	A	0.99551505	A	1.57299485287393	0	lncRNA	18945-1_{1..339}	lnc-TTC14-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC14-2:2	chr3	180175445	180175783	+	lnc-TTC14-2	lnc-TTC14-2:2	XLOC_002937	linc-TTC14	NA	NA	NA	inter
CUST_15522_PI429285431	0.9004436	A	0.9066356	A	0.995717229986889	0	lncRNA	17208-1_{1..206}	lnc-RTTN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RTTN-2:1	chr18	 68004768	 68004973	-	lnc-RTTN-2	lnc-RTTN-2:1	XLOC_012871	linc-RTTN-1	SOCS6	NA	chr18:67994768-67997434	inter
CUST_41142_PI429285431	4.398558	P	4.6417255	P	0.84488828536911	0	lncRNA	41939-1_{1..76}	ENST00000584128 ncrna:miRNA chromosome:GRCh37:11:2194293:2194368:1 gene:ENSG00000265258 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584128 ncrna:miRNA chromosome:GRCh37:11:2194293:2194368:1 gene:ENSG00000265258 gene_biotype:miRNA transcript_biotype:miRNA	chr11	  2194293	  2194368	+	ENSG00000265258	ENST00000584128	NA	NA	TH	NA	chr11:2185159-2193035	inter
LNCA_21_P0013602	2.9723725	A	2.32374	A	1.56768151928093	0	lncRNA	TCONS_l2_00029082	NA	NA	NA	NA	XLOC_l2_015038	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015038), lincRNA [TCONS_l2_00029082]"	chr9:132339802-132339861	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_l2_00029082	TCONS_l2_00029082	chr9	132339802	132339861	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006156	0.914737	A	0.95342916	A	0.973537083809676	0	lncRNA	TCONS_00016016	NA	NA	NA	NA	XLOC_007407	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007407), lincRNA [TCONS_00016016]"	chr9:76550945-76593537	hs|9q21.13	Agilent_HUMAN_G3V2	TCONS_00016016	TCONS_00016016	chr9	 76550945	 76593537	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21055_PI429285431	0.9139396	A	0.91346955	A	1.00032586691531	0	lncRNA	22682-1_{1..749}	lnc-ARAP2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARAP2-1:3	chr4	 36047601	 36048349	-	lnc-ARAP2-1	lnc-ARAP2-1:3	ENSG00000251160.1	RP11-399D2.1	NA	NA	NA	inter
CUST_49187_PI429285431	0.92002213	A	0.96141595	A	0.971715697465265	0	lncRNA	53011-1_{1..798}	hg19_lincRNAsTranscripts_TCONS_l2_00021338 range=chr4:147030377-147032618 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021338 range=chr4:147030377-147032618 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	147030377	147031174	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46616_PI429285431	0.91689146	A	0.94468445	A	0.98091974449355	0	lncRNA	50793-1_{1..1914}	"gi|397139614|ref|XR_132607.2| PREDICTED: Homo sapiens uncharacterized LOC283887 (LOC283887), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139614|ref|XR_132607.2| PREDICTED: Homo sapiens uncharacterized LOC283887 (LOC283887), misc_RNA"	Chr16	 25078359	 25080272	+	283887	XR_132607.3	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
CUST_13928_PI429285431	3.0835671	P	3.7683668	P	0.62209219030383	0	lncRNA	15575-1_{1..965}	lnc-SRL-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SRL-2:9	chr16	  4301323	  4302287	-	lnc-SRL-2	lnc-SRL-2:9	XLOC_011867	linc-SRL	SRL	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr16:4291323-4292081"	NA	inter
CUST_15624_PI429285431	2.485547	A	2.6382139	A	0.899585991175471	0	lncRNA	17312-1_{1..1175}	lnc-TMEM132B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132B-4:1	chr12	126651723	126652897	+	lnc-TMEM132B-4	lnc-TMEM132B-4:1	XLOC_009937	linc-TMEM132C-12	NA	NA	NA	inter
CUST_40745_PI429285431	6.2574406	P	6.141998	P	1.08330733909759	0	lncRNA	41473-2_{3001..3185}	n410455|NR_037598|lncRNA|Homosapiens||RefGeneNoncode|NR_037598||7.8897200|-0.2155902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410455|NR_037598|lncRNA|Homosapiens||RefGeneNoncode|NR_037598||7.8897200|-0.2155902	chr7	 30794750	 30794934	+	NA	NA	NA	NA	FAM188B	NA	chr7:30811033-30932002	inter
LNCA_21_P0013678	0.89245784	A	0.9072681	A	0.989786822387391	0	lncRNA	TCONS_l2_00029514	NA	NA	NA	NA	XLOC_l2_015306	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015306), lincRNA [TCONS_l2_00029514]"	chr9:99973670-99973611	hs|9q22.33	Agilent_HUMAN_G3V2	TCONS_l2_00029514	TCONS_l2_00029514	chr9	 99973611	 99973670	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25320_PI429285431	0.8876232	A	0.8964791	A	0.993880359628674	0	lncRNA	26852-1_{1..881}	lnc-PGGT1B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PGGT1B-2:1	chr5	114484461	114485341	-	lnc-PGGT1B-2	lnc-PGGT1B-2:1	ENSG00000250472.1	TRIM36-IT1	TRIM36	NA	chr5:114474461-114495341	inner
CUST_7853_PI429285431	0.9093445	A	2.269685	A	0.389490352786709	0	lncRNA	9477-1_{1..844}	lnc-ZMAT3-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZMAT3-2:3	chr3	178578082	178578925	-	lnc-ZMAT3-2	lnc-ZMAT3-2:3	ENSG00000237978	RP11-385J1.2	NA	NA	NA	inter
LNCA_21_P0007316	9.631032	P	9.57439	P	1.0400421514801	0	lncRNA	TCONS_00019571	NA	NA	NA	NA	XLOC_009370	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009370), lincRNA [TCONS_00019571]"	chr11:9142203-9142144	hs|11p15.4	Agilent_HUMAN_G3V2	TCONS_00019571	TCONS_00019571	chr11	  9142144	  9142203	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006916	3.7256966	P	3.49095	P	1.1767000393586	0	lncRNA	TCONS_00018340	NA	NA	NA	NA	XLOC_008620	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008620), lincRNA [TCONS_00018340]"	chr10:115291831-115291890	hs|10q25.3	Agilent_HUMAN_G3V2	TCONS_00018340	TCONS_00018340	chr10	115291831	115291890	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42475_PI429285431	8.199221	P	8.698727	P	0.707348946406084	0	lncRNA	45232-1_{1..134}	ENST00000391089 ncrna:snoRNA chromosome:GRCh37:2:227833705:227833838:-1 gene:ENSG00000212391 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391089 ncrna:snoRNA chromosome:GRCh37:2:227833705:227833838:-1 gene:ENSG00000212391 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	227833705	227833838	-	ENSG00000212391	ENST00000391089	NA	NA	RHBDD1	NA	chr2:227823705-227843838	inner
CUST_14875_PI429285431	0.8985071	A	0.91114795	A	0.991276304650376	0	lncRNA	16540-1_{1..513}	lnc-SHISA3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SHISA3-1:1	chr4	 42252938	 42253450	+	lnc-SHISA3-1	lnc-SHISA3-1:1	XLOC_003523	linc-SHISA3	NA	NA	NA	inter
CUST_39343_PI429285431	6.9665833	P	6.745492	P	1.1656149609712	0	lncRNA	40310-1_{1..2231}	n386415|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010jxj.1||5.6617300|-0.2662186	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386415|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010jxj.1||5.6617300|-0.2662186	chr6	 41105094	 41107324	+	NA	NA	NA	NA	TREML1	NA	chr6:41117342-41118567	inter
LNCA_21_P0005737	0.87800586	A	0.8822237	A	0.997080685605599	0	lncRNA	TCONS_00014801	NA	NA	NA	NA	XLOC_006876	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006876), lincRNA [TCONS_00014801]"	chr8:97469605-97469664	hs|8q22.1	Agilent_HUMAN_G3V2	TCONS_00014801	TCONS_00014801	chr8	 97469605	 97469664	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10671_PI429285431	1.3212419	A	1.3056885	A	1.01083911753044	0	lncRNA	12204-1_{1..377}	lnc-RP11-181C3.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-181C3.1.1-1:1	chr12	 98897538	 98897914	-	lnc-RP11-181C3.1.1-1	lnc-RP11-181C3.1.1-1:1	XLOC_010167	linc-CDK17-4	NA	NA	NA	inter
LNCA_21_P0003650	0.8766054	A	0.87869006	A	0.998556067274026	0	lncRNA	TCONS_00008230	NA	NA	NA	NA	XLOC_003682	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003682), lincRNA [TCONS_00008230]"	chr4:124949380-124949439	hs|4q28.1	Agilent_HUMAN_G3V2	TCONS_00008230	TCONS_00008230	chr4	124949380	124949439	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21167_PI429285431	1.8572338	A	0.8741805	A	1.97664432827262	0	lncRNA	22791-1_{1..377}	lnc-FGFR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FGFR1-1:1	chr8	 38259078	 38259454	-	lnc-FGFR1-1	lnc-FGFR1-1:1	ENSG00000254981.1	RP11-350N15.3	FGFR1	NA	chr8:38268656-38269201	inner
CUST_46837_PI429285431	1.3016163	A	2.076399	A	0.584476652040082	0	lncRNA	50974-1_{1..3000}	"gi|254750744|ref|NR_027413.2| Homo sapiens uncharacterized LOC100130581 (LOC100130581), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|254750744|ref|NR_027413.2| Homo sapiens uncharacterized LOC100130581 (LOC100130581), transcript variant 1, non-coding RNA"	Chr17	 41453296	 41456295	-	100130581	NR_027413.2	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40"	NA	inter
LNCA_21_P0005158	0.87554663	A	0.8752867	A	1.00018018597819	0	lncRNA	TCONS_00012676	NA	NA	NA	NA	XLOC_005633	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005633), lincRNA [TCONS_00012676]"	chr6:19721584-19721525	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00012676	TCONS_00012676	chr6	 19721525	 19721584	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2_PI429285431	1.7777178	A	1.8727307	A	0.936263875701277	0	lncRNA	2-1_{1..2044}	"transcript_id ""ENST00000371162.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000371162.4"" | genecode_v17"	chr2	111994581	111996624	-	ENSG00000233488.2	ENST00000371162.4	RP11-181E10.1	RP11-181E10.1-001	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
LNCA_21_P0009596	0.8753	A	0.8740195	A	1.00088796897593	0	lncRNA	TCONS_00026588	NA	NA	NA	NA	XLOC_012904	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012904), lincRNA [TCONS_00026588]"	chr18:77343382-77343323	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026588	TCONS_00026588	chr18	 77343323	 77343382	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25075_PI429285431	3.3411062	P	3.708578	P	0.775139673415436	0	lncRNA	26612-1_{1..277}	lnc-SLC7A13-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC7A13-2:1	chr8	 87166297	 87166573	-	lnc-SLC7A13-2	lnc-SLC7A13-2:1	ENSG00000253675.1	CTD-3118D11.2	ATP6V0D2	"hg19_refFlat_ATP6V0D2:range=chr8:87111208-871652065'pad=0,hg19_refFlat_ATP6V0D2:range=chr8:87111208-871652065'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.20chr8:87156297-87166454"	NA	inner
CUST_32003_PI429285431	5.4319787	P	5.9881167	P	0.680120366646401	0	lncRNA	33725-1_{1..2864}	n338565|AK127956|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|971|NULL|-0.8506450|-0.2628856	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n338565|AK127956|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|971|NULL|-0.8506450|-0.2628856	chr1	234845004	234847867	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50439_PI429285431	0.89517593	A	0.8859904	A	1.0063872361688	0	lncRNA	54142-1_{1..1152}	hg19_lincRNAsTranscripts_TCONS_l2_00030195 range=chrX:48074036-48077405 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030195 range=chrX:48074036-48077405 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	 48074036	 48075187	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40267_PI429285431	5.186343	P	5.045597	P	1.10247504490412	0	lncRNA	41077-1_{1..1647}	n408203|NR_028347|lncRNA|Homosapiens||RefGeneNoncode|NR_028347||2.7122200|-0.1977687	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408203|NR_028347|lncRNA|Homosapiens||RefGeneNoncode|NR_028347||2.7122200|-0.1977687	chr7	 38724945	 38726591	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35827_PI429285431	10.477035	P	10.10529	P	1.29391693117719	0	lncRNA	37230-1_{1..3000}	n344500|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_48|NULL|-1.2207600|-0.2731906	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344500|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_48|NULL|-1.2207600|-0.2731906	chrX	102024112	102027111	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3586_PI429285431	0.90843594	A	0.9058018	A	1.00182751458725	0	lncRNA	3556-1_{1..608}	"transcript_id ""ENST00000439575.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439575.1"" | genecode_v17"	chr10	  3052723	  3053330	+	ENSG00000234182.1	ENST00000439575.1	RP11-118K6.2	RP11-118K6.2-001	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20"	NA	inter
CUST_6125_PI429285431	6.2482023	P	6.520705	P	0.827882139605762	0	lncRNA	6051-1_{1..386}	"transcript_id ""ENST00000582697.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582697.1"" | genecode_v17"	chr18	 22534171	 22534556	-	ENSG00000264345.1	ENST00000582697.1	RP11-958F21.1	RP11-958F21.1-001	NA	NA	NA	inter
CUST_13249_PI429285431	0.8968282	A	1.1879582	A	0.817261682428218	0	lncRNA	14879-1_{1..344}	lnc-EEFSEC-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EEFSEC-1:2	chr3	128190072	128190415	+	lnc-EEFSEC-1	lnc-EEFSEC-1:2	XLOC_002806	linc-RAB7A-4	GATA2	NA	chr3:128198265-128200360	inter
CUST_16133_PI429285431	3.3671527	P	3.7313907	P	0.776879097221873	0	lncRNA	17839-1_{1..391}	lnc-PKNOX1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PKNOX1-2:3	chr21	 44303716	 44304106	+	lnc-PKNOX1-2	lnc-PKNOX1-2:3	XLOC_013957	linc-NDUFV3-1	NDUFV3	NA	chr21:44313378-44313917	inter
CUST_30305_PI429285431	9.786119	P	9.224903	P	1.47551235394736	0	lncRNA	32081-1_{1..249}	n335210|AY530159|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255163|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255163|-1.0367400|-0.4451610	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335210|AY530159|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255163|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255163|-1.0367400|-0.4451610	chr8	 15601087	 15601335	+	NA	NA	NA	NA	TUSC3	NA	chr8:15591087-15624158	inner
CUST_40762_PI429285431	5.6087284	P	5.624729	P	0.988970505079576	0	lncRNA	41486-1_{1..3000}	n410480|NR_037625_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_5||-0.2476560|-0.3139196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410480|NR_037625_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037625_5||-0.2476560|-0.3139196	chr6	  4383202	  4386201	+	NA	NA	NA	NA	NA	"hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-59.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10"	NA	inter
CUST_43903_PI429285431	0.8803412	A	1.4330888	A	0.681720560458484	0	lncRNA	48617-1_{1..1191}	"gi|310118969|ref|XR_109916.1| PREDICTED: Homo sapiens uncharacterized LOC100506036 (LOC100506036), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118969|ref|XR_109916.1| PREDICTED: Homo sapiens uncharacterized LOC100506036 (LOC100506036), misc_RNA"	Chr2	 97477976	 97479166	-	100506036	XR_109916.2	NA	NA	NA	"hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.46;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
LNCA_21_P0007856	2.1345963	A	2.943305	P	0.570892613008629	0	lncRNA	TCONS_00021241	NA	NA	NA	NA	XLOC_009926	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009926), lincRNA [TCONS_00021241]"	chr12:124575334-124575393	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00021241	TCONS_00021241	chr12	124575334	124575393	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009996	2.0346432	A	1.175124	A	1.81443352237634	0	lncRNA	TCONS_00028278	NA	NA	NA	NA	XLOC_013623	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013623), lincRNA [TCONS_00028278]"	chr20:1167048-1166989	hs|20p13	Agilent_HUMAN_G3V2	TCONS_00028278	TCONS_00028278	chr20	  1166989	  1167048	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1342_PI429285431	3.5500975	P	3.8781831	P	0.796592830323403	0	lncRNA	1331-1_{1..500}	"transcript_id ""ENST00000412811.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412811.1"" | genecode_v17"	chr3	 40807698	 40808197	+	ENSG00000231873.1	ENST00000412811.1	RP11-761N21.1	RP11-761N21.1-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_27452_PI429285431	0.9051604	A	0.91156316	A	0.995571778571724	0	lncRNA	29022-1_{1..586}	n324628|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000314058|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000314058|-1.2473300|-0.2002835	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324628|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000314058|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000314058|-1.2473300|-0.2002835	chr5	 95213691	 95214276	+	NA	NA	NA	NA	ELL2	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40chr5:95220802-95228440"	NA	inter
LNCA_21_P0009222	3.9793465	P	5.073258	P	0.468489461349971	0	lncRNA	TCONS_00025310	NA	NA	NA	NA	XLOC_012114	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012114), lincRNA [TCONS_00025310]"	chr17:13530887-13530946	hs|17p12	Agilent_HUMAN_G3V2	TCONS_00025310	TCONS_00025310	chr17	 13530887	 13530946	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29667_PI429285431	1.244355	A	1.4723883	A	0.853798006968017	0	lncRNA	31429-1_{1..469}	n333303|AY122480|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084521|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084521|1.9061700|-0.0894899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333303|AY122480|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084521|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084521|1.9061700|-0.0894899	chr20	   207925	   208393	+	NA	NA	NA	NA	DEFB129	NA	chr20:207899-210527	inner
CUST_25492_PI429285431	0.9103615	A	0.9101614	A	1.00013870836995	0	lncRNA	27022-1_{1..342}	lnc-RRP1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RRP1B-1:1	chr21	 45152020	 45152361	+	lnc-RRP1B-1	lnc-RRP1B-1:1	ENSG00000241238.1	AP001052.9	PDXK	NA	chr21:45142020-45162146	inner
CUST_19817_PI429285431	1.7840016	A	2.137374	A	0.782752219904003	0	lncRNA	21474-1_{1..348}	lnc-KTN1-AS1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KTN1-AS1-1:2	chr14	 56263321	 56263668	-	lnc-KTN1-AS1-1	lnc-KTN1-AS1-1:2	ENSG00000258791.2	LINC00520	NA	NA	NA	inter
CUST_17605_PI429285431	0.90834796	A	0.90480506	A	1.00245876897269	0	lncRNA	19330-2_{3001..6000}	lnc-SOX11-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SOX11-3:2	chr2	  6111718	  6114717	+	lnc-SOX11-3	lnc-SOX11-3:2	XLOC_001327	linc-RSAD2-2	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-58.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.50;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00"	NA	inter
CUST_49394_PI429285431	0.91016406	A	0.9284869	A	0.98737988516019	0	lncRNA	53205-4_{9001..9739}	hg19_lincRNAsTranscripts_TCONS_l2_00022568 range=chr5:147618054-147646815 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022568 range=chr5:147618054-147646815 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	147627054	147627792	+	NA	NA	NA	NA	SPINK13	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr5:147648423-147656815"	NA	inter
CUST_30616_PI429285431	3.636798	P	3.567954	P	1.04887590548408	0	lncRNA	32398-1_{1..290}	n335940|X71927|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323174_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323174_06|-1.0396000|-0.1918358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335940|X71927|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323174_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323174_06|-1.0396000|-0.1918358	chr6	  3429652	  3429941	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3419652-3439942	inner
LNCA_21_P0001905	0.91310006	A	0.9438632	A	0.978902352258982	0	lncRNA	TCONS_00002980	NA	NA	NA	NA	XLOC_001627	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001627), lincRNA [TCONS_00002980]"	chr2:113402873-113402932	hs|2q13	Agilent_HUMAN_G3V2	TCONS_00002980	TCONS_00002980	chr2	113402873	113402932	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42794_PI429285431	0.9011489	A	0.908417	A	0.99497480572549	0	lncRNA	45786-1_{1..68}	ENST00000516015 ncrna:snoRNA chromosome:GRCh37:14:49410650:49410717:-1 gene:ENSG00000251824 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516015 ncrna:snoRNA chromosome:GRCh37:14:49410650:49410717:-1 gene:ENSG00000251824 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 49410650	 49410717	-	ENSG00000251824	ENST00000516015	NA	NA	NA	NA	NA	inter
CUST_29817_PI429285431	7.5181875	P	7.7823195	P	0.832699579190751	0	lncRNA	31580-1_{1..816}	n333536|BC048426|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000099006|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000099006|-1.0805000|-0.0949731	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333536|BC048426|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000099006|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000099006|-1.0805000|-0.0949731	chr5	138940752	138941567	+	NA	NA	NA	NA	UBE2D2	NA	chr5:138930752-138951997	inner
CUST_40959_PI429285431	5.497477	P	6.0110717	P	0.700474919011172	0	lncRNA	41634-2_{3001..4262}	n410982|NR_038444|lncRNA|Homosapiens||RefGeneNoncode|NR_038444||0.4131340|-0.2784239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n410982|NR_038444|lncRNA|Homosapiens||RefGeneNoncode|NR_038444||0.4131340|-0.2784239	chr10	 97515962	 97517223	-	NA	NA	NA	NA	ENTPD1	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ENTPD1:range=chr10:97602163-976261405'pad=0,hg19_refFlat_ENTPD1:range=chr10:97602163-976261405'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ENTPD1:range=chr10:97515997-976261405'pad=0,hg19_refFlat_ENTPD1:range=chr10:97515997-976261405'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.60;hg19_refFlat_ENTPD1:range=chr10:97604234-976261405'pad=0,hg19_refFlat_ENTPD1:range=chr10:97604234-976261405'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ENTPD1:range=chr10:97471714-976261405'pad=0,hg19_refFlat_ENTPD1:range=chr10:97471714-976261405'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ENTPD1:range=chr10:97515472-976261405'pad=0,hg19_refFlat_ENTPD1:range=chr10:97515472-976261405'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50chr10:97502962-97637023"	NA	inner
CUST_11589_PI429285431	1.0384351	A	1.2683907	A	0.85266113263707	0	lncRNA	13168-1_{1..449}	lnc-BBC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BBC3-1:1	chr19	 47747315	 47747763	-	lnc-BBC3-1	lnc-BBC3-1:1	XLOC_013370	linc-BBC3	NA	NA	NA	inter
LNCA_21_P0005829	4.404556	P	4.6339884	P	0.852970410200291	0	lncRNA	TCONS_00015000	NA	NA	NA	NA	XLOC_007080	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007080), lincRNA [TCONS_00015000]"	chr8:49428440-49428381	hs|8q11.21	Agilent_HUMAN_G3V2	TCONS_00015000	TCONS_00015000	chr8	 49428381	 49428440	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22437_PI429285431	7.204333	P	7.168396	P	1.02522246721713	0	lncRNA	24025-1_{1..545}	lnc-CAMK2G-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CAMK2G-1:1	chr10	 75571232	 75571776	-	lnc-CAMK2G-1	lnc-CAMK2G-1:1	ENSG00000243698.1	RP11-574K11.18	CAMK2G	NA	chr10:75572259-75581556	inner
LNCA_21_P0009523	3.228359	P	0.91632944	A	4.96581171171682	0	lncRNA	TCONS_00026415	NA	NA	NA	NA	XLOC_012759	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012759), lincRNA [TCONS_00026415]"	chr18:9895467-9895408	hs|18p11.22	Agilent_HUMAN_G3V2	TCONS_00026415	TCONS_00026415	chr18	  9895408	  9895467	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00807615	11.97148	P	10.899897	P	2.10173823896084	0	lncRNA	BC014023	NA	BC014023	NA	NA	XLOC_l2_015397	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015397), lincRNA [TCONS_l2_00030085]"	chr6:74229732-74230734	hs|6q13	Agilent_HUMAN_G3V2	BC014023	BC014023	chr6	 74229732	 74230734	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43829_PI429285431	7.319097	P	7.8956385	P	0.670569374229167	0	lncRNA	48553-1_{1..733}	"gi|313760605|ref|NR_037631.1| Homo sapiens uncharacterized LOC100288911 (LOC100288911), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|313760605|ref|NR_037631.1| Homo sapiens uncharacterized LOC100288911 (LOC100288911), non-coding RNA"	NW_003315908.1	     7746	     8478	+	100288911	NR_037631.1	NA	NA	NA	NA	NA	Unknown
CUST_46964_PI429285431	1.2316015	A	0.913219	A	1.24693174796725	0	lncRNA	51069-1_{1..2231}	"gi|193083199|ref|NR_023925.1| Homo sapiens long intergenic non-protein coding RNA 470 (LINC00470), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|193083199|ref|NR_023925.1| Homo sapiens long intergenic non-protein coding RNA 470 (LINC00470), transcript variant 1, non-coding RNA"	Chr18	  1268312	  1270542	-	56651	NR_023925.1	NA	NA	NA	"hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-28.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80"	NA	inter
LNCA_21_P0004902	0.8854948	A	3.602548	P	0.152084686537642	0	lncRNA	ENST00000452402	NA	NA	NA	NA	XLOC_005365	NA	ENST00000452402	THC2677074	NA	"BROAD Institute lincRNA (XLOC_005365), lincRNA [TCONS_00011871]"	chr6:81153205-81162882	hs|6q14.1	Agilent_HUMAN_G3V2	ENST00000452402	ENST00000452402	chr6	 81153205	 81162882	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23189_PI429285431	1.2036455	A	0.8917285	A	1.24135607274739	0	lncRNA	24761-1_{1..368}	lnc-EHD3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EHD3-2:1	chr2	 31214034	 31214401	+	lnc-EHD3-2	lnc-EHD3-2:1	ENSG00000234579.1	AC009305.1	GALNT14	NA	chr2:31204034-31224292	inner
LNCA_21_P0014896	0.88304216	A	0.8924835	A	0.993477128689696	0	lncRNA	ENST00000540997	XR_132882	XR_132882	NA	Hs.720838	LOC100287497	NA	ENST00000540997	THC2764587	NA	"PREDICTED: Homo sapiens hypothetical LOC100287497 (LOC100287497), miscRNA [XR_132882]"	chr1:224196828-224196887	hs|1q42.11	Agilent_HUMAN_G3V2	ENST00000540997	ENST00000540997	chr1	224196828	224196887	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17378_PI429285431	5.2082887	P	5.4560976	P	0.842174501013788	0	lncRNA	19100-1_{1..253}	lnc-DYDC1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DYDC1-3:1	chr10	 83634105	 83634357	-	lnc-DYDC1-3	lnc-DYDC1-3:1	XLOC_008875	linc-DYDC1-3	NRG3	NA	chr10:83635070-83644234	inter
CUST_24449_PI429285431	0.89955586	A	1.4833268	A	0.667217512083949	0	lncRNA	26002-1_{1..565}	lnc-C7orf11-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C7orf11-6:1	chr7	 39649611	 39650175	-	lnc-C7orf11-6	lnc-C7orf11-6:1	ENSG00000231951.1	AC004837.4	NA	"hg19_refFlat_AKIRIN1:range=chr1:39457053-394697275'pad=0,hg19_refFlat_AKIRIN1:range=chr1:39457053-394697275'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20"	NA	inter
CUST_50523_PI429285431	1.2672344	A	0.90050876	A	1.28942301536445	0	lncRNA	54219-1_{1..568}	hg19_lincRNAsTranscripts_TCONS_l2_00030373 range=chrX:136076752-136103735 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030373 range=chrX:136076752-136103735 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	136076752	136077319	+	NA	NA	NA	NA	GPR101	NA	chrX:136112307-136113735	inter
LNCA_21_P0002411	1.4945884	A	0.87417316	A	1.5373175921102	0	lncRNA	TCONS_00004172	NA	NA	NA	NA	XLOC_002012	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002012), lincRNA [TCONS_00004172]"	chr2:21316997-21316938	hs|2p24.1	Agilent_HUMAN_G3V2	TCONS_00004172	TCONS_00004172	chr2	 21316938	 21316997	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014534	4.158885	P	4.065024	P	1.06722250891042	0	lncRNA	XR_110228	XR_110228	XR_110228	NA	NA	LOC100506659	uncharacterized LOC100506659	NA	THC2649633	NA	"PREDICTED: Homo sapiens hypothetical LOC100506659 (LOC100506659), miscRNA [XR_110228]"	chr14:81688692-81688751	hs|14q31.1	Agilent_HUMAN_G3V2	XR_110228	XR_110228	chr14	 81688692	 81688751	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14154_PI429285431	1.2477927	A	1.4046633	A	0.89696860807939	0	lncRNA	15805-1_{1..459}	lnc-CPXM2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPXM2-1:2	chr10	125703505	125703963	-	lnc-CPXM2-1	lnc-CPXM2-1:2	XLOC_008978	linc-CPXM2-1	NA	NA	NA	inter
CUST_42499_PI429285431	2.525693	A	3.2442393	P	0.607709478914138	0	lncRNA	45270-1_{1..131}	ENST00000516913 ncrna:snoRNA chromosome:GRCh37:15:75413877:75414007:-1 gene:ENSG00000252722 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516913 ncrna:snoRNA chromosome:GRCh37:15:75413877:75414007:-1 gene:ENSG00000252722 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 75413877	 75414007	-	ENSG00000252722	ENST00000516913	NA	NA	C15orf39	NA	chr15:75406602-75424007	inter
CUST_42998_PI429285431	8.724853	P	8.884231	P	0.895411033036336	0	lncRNA	46161-1_{1..123}	ENST00000384281 ncrna:snoRNA chromosome:GRCh37:11:2985001:2985123:-1 gene:ENSG00000207008 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384281 ncrna:snoRNA chromosome:GRCh37:11:2985001:2985123:-1 gene:ENSG00000207008 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	  2985001	  2985123	-	ENSG00000207008	ENST00000384281	NA	NA	NAP1L4	NA	chr11:2975001-2995123	inner
CUST_23902_PI429285431	3.0839765	A	3.184047	P	0.932987398243102	0	lncRNA	25459-1_{1..610}	lnc-TSFM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSFM-1:1	chr12	 58236042	 58236651	+	lnc-TSFM-1	lnc-TSFM-1:1	ENSG00000257953.1	RP11-620J15.1	CTDSP2	NA	chr12:58226042-58240747	inner
LNCA_21_P0008447	6.820664	P	7.404616	P	0.667133780720802	0	lncRNA	TCONS_00022768	NA	NA	NA	NA	XLOC_011050	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011050), lincRNA [TCONS_00022768]"	chr14:64214044-64212831	hs|14q23.2	Agilent_HUMAN_G3V2	TCONS_00022768	TCONS_00022768	chr14	 64212831	 64214044	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7014_PI429285431	10.61668	P	11.660283	P	0.485114430317969	0	lncRNA	6961-1_{1..628}	"transcript_id ""ENST00000444185.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444185.1"" | genecode_v17"	chrX	  5571462	  5572089	-	ENSG00000236120.2	ENST00000444185.1	RP11-733O18.1	RP11-733O18.1-002	NA	NA	NA	inter
LNCA_21_P0003621	2.1622374	A	1.7717665	A	1.31082119001771	0	lncRNA	TCONS_00008108	NA	NA	NA	NA	XLOC_003574	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003574), lincRNA [TCONS_00008108]"	chr4:75808186-75808245	hs|4q13.3	Agilent_HUMAN_G3V2	TCONS_00008108	TCONS_00008108	chr4	 75808186	 75808245	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46188_PI429285431	1.5528063	A	0.8957016	A	1.5769147846237	0	lncRNA	50434-1_{1..1245}	"gi|333944059|ref|NR_038288.1| Homo sapiens TEX26 antisense RNA 1 (TEX26-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|333944059|ref|NR_038288.1| Homo sapiens TEX26 antisense RNA 1 (TEX26-AS1), transcript variant 2, non-coding RNA"	Chr13	 31504809	 31506053	-	100507064	NR_038288.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0005125	0.87231946	A	3.2962384	P	0.186349268370841	0	lncRNA	TCONS_00012549	NA	NA	NA	NA	XLOC_005397	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005397), lincRNA [TCONS_00012549]"	chr6:98417347-98417406	hs|6q16.1	Agilent_HUMAN_G3V2	TCONS_00012549	TCONS_00012549	chr6	 98417347	 98417406	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001414	0.8704093	A	0.8694983	A	1.00063165649248	0	lncRNA	TCONS_00001257	NA	NA	NA	NA	XLOC_000545	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000545), lincRNA [TCONS_00001257]"	chr1:208909944-208910003	hs|1q32.2	Agilent_HUMAN_G3V2	TCONS_00001257	TCONS_00001257	chr1	208909944	208910003	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8745_PI429285431	0.87062764	A	0.8697089	A	1.00063702485487	0	lncRNA	10288-1_{1..3000}	lnc-RAD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAD1-1:1	chr5	 34904506	 34907505	-	lnc-RAD1-1	lnc-RAD1-1:1	ENSG00000251069	ENST00000507140	TTC23L	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr5:34894506-34899567"	NA	inter
LNCA_21_P0008985	0.9148044	A	1.2418054	A	0.79719192396901	0	lncRNA	TCONS_00024490	NA	NA	NA	NA	XLOC_011810	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011810), lincRNA [TCONS_00024490]"	chr16:86061212-86061271	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024490	TCONS_00024490	chr16	 86061212	 86061271	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38132_PI429285431	8.4449215	P	6.6209064	P	3.54065211643903	0	lncRNA	39203-2_{3001..4462}	n381272|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gch.1||1.3478900|-0.3558350	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381272|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gch.1||1.3478900|-0.3558350	chr1	162754900	162756361	+	NA	NA	NA	NA	DDR2	NA	chr1:162741900-162750255	inter
LNCA_21_P0004811	2.5302706	A	3.425702	P	0.537586420115081	0	lncRNA	TCONS_00011630	NA	NA	NA	NA	XLOC_005117	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005117), lincRNA [TCONS_00011630]"	chr6:187024-187083	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_00011630	TCONS_00011630	chr6	   187024	   187083	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22910_PI429285431	0.9207011	A	1.726315	A	0.572118578850271	0	lncRNA	24486-1_{1..667}	lnc-STBD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STBD1-1:1	chr4	 77177331	 77177997	+	lnc-STBD1-1	lnc-STBD1-1:1	ENSG00000248325.1	RP11-67M24.5	FAM47E	NA	chr4:77172853-77187613	inner
CUST_13271_PI429285431	1.2350756	A	0.904961	A	1.25711322892641	0	lncRNA	14903-1_{1..3000}	lnc-ZNF516-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF516-8:1	chr18	 73768277	 73771276	-	lnc-ZNF516-8	lnc-ZNF516-8:1	XLOC_012889	linc-C18orf62-2	NA	NA	NA	inter
CUST_40138_PI429285431	2.7164707	A	2.4187245	A	1.22922260246482	0	lncRNA	40976-1_{1..1844}	n407736|NR_027254|lncRNA|Homosapiens||RefGeneNoncode|NR_027254||2.1159400|-0.1286681	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n407736|NR_027254|lncRNA|Homosapiens||RefGeneNoncode|NR_027254||2.1159400|-0.1286681	chr17	 41026690	 41028533	-	NA	NA	NA	NA	G6PC	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30chr17:41052815-41060751"	NA	inter
LNCA_21_P0014681	0.9075494	A	0.92699534	A	0.986611535096838	0	lncRNA	XR_111518	XR_111518	XR_111518	NA	NA	LOC100506530	uncharacterized LOC100506530	NA	THC2642697	NA	"PREDICTED: Homo sapiens hypothetical LOC100506530 (LOC100506530), miscRNA [XR_111518]"	chr15:62023514-62023573	hs|15q22.2	Agilent_HUMAN_G3V2	XR_111518	XR_111518	chr15	 62023514	 62023573	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014811	4.192896	P	2.0410287	A	4.44402613149346	0	lncRNA	XR_132642	XR_132642	XR_132642	NA	NA	LOC100652927	uncharacterized LOC100652927	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652927 (LOC100652927), miscRNA [XR_132642]"	chr17:33849325-33842309	hs|17q12	Agilent_HUMAN_G3V2	XR_132642	XR_132642	chr17	 33842309	 33849325	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24309_PI429285431	3.649802	P	3.8035452	P	0.898915119438649	0	lncRNA	25860-1_{1..329}	lnc-NPDC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPDC1-1:1	chr9	139933045	139933373	-	lnc-NPDC1-1	lnc-NPDC1-1:1	ENSG00000228866.1	RP11-229P13.21	NPDC1	NA	chr9:139933909-139940676	inter
CUST_36374_PI429285431	6.175191	P	6.635576	P	0.726792279781003	0	lncRNA	37593-1_{1..762}	n344891|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_440|NULL|-1.4176600|-0.4900468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344891|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_440|NULL|-1.4176600|-0.4900468	chr6	 28088392	 28089153	-	NA	NA	NA	NA	ZSCAN16	NA	chr6:28092387-28097857	inter
CUST_50048_PI429285431	10.819729	P	10.664717	P	1.11343087944787	0	lncRNA	53784-1_{1..760}	hg19_lincRNAsTranscripts_TCONS_l2_00027750 range=chr8:49293569-49297798 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027750 range=chr8:49293569-49297798 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 49293569	 49294328	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5069_PI429285431	8.562675	P	8.809352	P	0.842835507906168	0	lncRNA	5009-1_{1..372}	"transcript_id ""ENST00000548104.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548104.1"" | genecode_v17"	chr14	105559946	105560317	+	ENSG00000257556.1	ENST00000548104.1	RP11-44N21.1	RP11-44N21.1-001	NA	NA	NA	inter
LNCA_21_P0001884	0.88867384	A	0.9018452	A	0.990911858041586	0	lncRNA	ENST00000439259	NA	BC042517	NA	Hs.639404	XLOC_001543	NA	ENST00000439259	THC2606416	NA	"BROAD Institute lincRNA (XLOC_001543), lincRNA [TCONS_00002942]"	chr2:78354873-78354932	hs|2p12	Agilent_HUMAN_G3V2	ENST00000439259	ENST00000439259	chr2	 78354873	 78354932	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28050_PI429285431	7.2033362	P	7.6013927	P	0.758879906031163	0	lncRNA	29668-1_{1..553}	n325316|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326240|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326240|-1.3410000|-0.1883682	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325316|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326240|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326240|-1.3410000|-0.1883682	chr2	 45249225	 45249777	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001045	0.8852239	A	2.5304134	A	0.319704398943857	0	lncRNA	ENST00000448412	NA	NA	NA	NA	XLOC_000509	NA	ENST00000448412	NA	NA	"BROAD Institute lincRNA (XLOC_000509), lincRNA [TCONS_00000362]"	chr1:193696200-193696259	hs|1q31.2	Agilent_HUMAN_G3V2	ENST00000448412	ENST00000448412	chr1	193696200	193696259	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9688_PI429285431	2.8365624	A	3.6040046	P	0.587458075023261	0	lncRNA	11204-2_{3001..3379}	lnc-MTHFSD-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-MTHFSD-2:8	chr16	 86535030	 86535408	-	lnc-MTHFSD-2	lnc-MTHFSD-2:8	XLOC_012046	linc-COX4NB-9	NA	NA	NA	inter
CUST_20559_PI429285431	4.4555163	P	4.5614166	P	0.929224887766316	0	lncRNA	22200-1_{1..980}	lnc-LPO-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LPO-1:2	chr17	 56429360	 56430339	+	lnc-LPO-1	lnc-LPO-1:2	ENSG00000265148.1	RP5-1171I10.4	RNF43	"hg19_refFlat_SUPT4H1:range=chr17:56423607-564294965'pad=0,hg19_refFlat_SUPT4H1:range=chr17:56423607-564294965'pad=0 3'pad=0 strand=- repeatMasking=none,-97.40chr17:56431037-56439790"	NA	inner
CUST_45624_PI429285431	9.581563	P	9.238769	P	1.26821030077956	0	lncRNA	50007-1_{1..1889}	"gi|296317335|ref|NR_033675.1| Homo sapiens voltage-dependent anion channel 2 (VDAC2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|296317335|ref|NR_033675.1| Homo sapiens voltage-dependent anion channel 2 (VDAC2), transcript variant 4, non-coding RNA"	Chr10	 76970300	 76972188	+	7417	NR_033675.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0010660	10.0858	P	9.631378	P	1.37023372582967	0	lncRNA	TCONS_l2_00001619	NA	NA	NA	NA	XLOC_l2_001192	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001192), lincRNA [TCONS_l2_00001619]"	chr1:171652746-171652686	hs|1q24.3	Agilent_HUMAN_G3V2	TCONS_l2_00001619	TCONS_l2_00001619	chr1	171652686	171652746	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006700	0.87994874	A	0.88653326	A	0.995446357936816	0	lncRNA	ENST00000424701	NA	NA	NA	NA	XLOC_008603	NA	ENST00000424701	THC2663068	NA	"BROAD Institute lincRNA (XLOC_008603), lincRNA [TCONS_00017864]"	chr10:107917828-107917887	hs|10q25.1	Agilent_HUMAN_G3V2	ENST00000424701	ENST00000424701	chr10	107917828	107917887	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47025_PI429285431	10.617326	P	10.55743	P	1.04239061500058	0	lncRNA	51116-2_{3001..4188}	"gi|209915599|ref|NR_024247.1| Homo sapiens melanoma associated antigen (mutated) 1 (MUM1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209915599|ref|NR_024247.1| Homo sapiens melanoma associated antigen (mutated) 1 (MUM1), transcript variant 2, non-coding RNA"	Chr19	  1359323	  1360510	+	84939	NR_024247.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008767	0.876925	A	0.87931776	A	0.998342839761113	0	lncRNA	TCONS_00023758	NA	NA	NA	NA	XLOC_011550	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011550), lincRNA [TCONS_00023758]"	chr15:82152172-82152113	hs|15q25.2	Agilent_HUMAN_G3V2	TCONS_00023758	TCONS_00023758	chr15	 82152113	 82152172	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014659	5.351717	P	5.3093495	P	1.02980237322057	0	lncRNA	XR_110932	XR_110932	XR_110932	NA	Hs.730266	LOC100506678	uncharacterized LOC100506678	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506678 (LOC100506678), miscRNA [XR_110932]"	chrX:15665529-15665470	hs|Xp22.2	Agilent_HUMAN_G3V2	XR_110932	XR_110932	chrX	 15665470	 15665529	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12548_PI429285431	8.53245	P	8.702827	P	0.888610442264818	0	lncRNA	14159-1_{1..2106}	lnc-TMEM105-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM105-2:12	chr17	 79354285	 79356390	-	lnc-TMEM105-2	lnc-TMEM105-2:12	XLOC_012586	linc-TMEM105-1	LOC100130370	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-20.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90chr17:79352934-79357447"	NA	inter
CUST_8024_PI429285431	3.8209362	P	4.286921	P	0.723976713850351	0	lncRNA	9633-2_{3001..3546}	lnc-YTHDF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YTHDF1-1:1	chr20	 61826948	 61827493	-	lnc-YTHDF1-1	lnc-YTHDF1-1:1	ENSG00000249254	ENST00000504036	YTHDF1	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60chr20:61826781-61835062"	NA	inter
CUST_27512_PI429285431	1.5215555	A	1.5218844	A	0.999772049876892	0	lncRNA	29082-1_{1..578}	n324690|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320637|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320637|-1.0471400|-0.3938873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324690|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320637|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320637|-1.0471400|-0.3938873	chr22	 26033443	 26034020	-	NA	NA	NA	NA	ADRBK2	"hg19_refFlat_YES1:range=chr18:724424-7568275'pad=0,hg19_refFlat_YES1:range=chr18:724424-7568275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10chr22:26023443-26054499"	NA	inner
CUST_504_PI429285431	0.89620936	A	0.88954127	A	1.00463266555154	0	lncRNA	496-1_{1..646}	"transcript_id ""ENST00000602484.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602484.1"" | genecode_v17"	chr1	183589981	183590626	-	ENSG00000270009.1	ENST00000602484.1	RP1-127C7.6	RP1-127C7.6-001	ARPC5	NA	chr1:183595332-183600626	inter
CUST_6606_PI429285431	1.2934139	A	1.1150836	A	1.13157350300015	0	lncRNA	6554-1_{1..517}	"transcript_id ""ENST00000599726.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599726.1"" | genecode_v17"	chr19	 57183636	 57184152	+	ENSG00000268352.1	ENST00000599726.1	AC007228.5	AC007228.5-001	ZNF835	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr19:57174020-57183123"	NA	inter
LNCA_21_P0002472	0.87724185	A	0.9105596	A	0.977170523327218	0	lncRNA	TCONS_00004331	NA	NA	NA	NA	XLOC_002204	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002204), lincRNA [TCONS_00004331]"	chr2:92179436-92179377	hs|2p11.1	Agilent_HUMAN_G3V2	TCONS_00004331	TCONS_00004331	chr2	 92179377	 92179436	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11711_PI429285431	1.4619808	A	0.88241535	A	1.49439905722072	0	lncRNA	13289-1_{1..293}	lnc-JMJD1C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JMJD1C-1:1	chr10	 64885185	 64885477	-	lnc-JMJD1C-1	lnc-JMJD1C-1:1	XLOC_008835	linc-EGR2	NRBF2	NA	chr10:64893007-64895314	inter
CUST_47468_PI429285431	7.2862954	P	7.0003624	P	1.21919847213463	0	lncRNA	51493-1_{1..3000}	"gi|221136789|ref|NR_024448.2| Homo sapiens glucuronidase, beta pseudogene 11 (GUSBP11), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|221136789|ref|NR_024448.2| Homo sapiens glucuronidase, beta pseudogene 11 (GUSBP11), non-coding RNA"	Chr22	 23980674	 23983673	-	91316	NR_024448.2	NA	NA	NA	"hg19_refFlat_RGL4:range=chr22:24034218-240410705'pad=0,hg19_refFlat_RGL4:range=chr22:24034218-240410705'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90"	NA	inter
CUST_40284_PI429285431	0.8873381	A	1.0389782	A	0.900226475585025	0	lncRNA	41090-2_{3001..3557}	n408231|NR_028394|lncRNA|Homosapiens||RefGeneNoncode|NR_028394||9.3746800|-0.1508701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408231|NR_028394|lncRNA|Homosapiens||RefGeneNoncode|NR_028394||9.3746800|-0.1508701	chr1	231667398	231667954	+	NA	NA	NA	NA	DISC1	NA	chr1:231762561-231964990	inter
CUST_37604_PI429285431	3.2370281	A	3.1322234	P	1.07534880886727	0	lncRNA	38702-1_{1..484}	n346080|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1630|NULL|-1.3145900|-0.2197608	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346080|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1630|NULL|-1.3145900|-0.2197608	chr21	 18811210	 18811693	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41098_PI429285431	10.106386	P	9.96603	P	1.10217705597031	0	lncRNA	41808-1_{1..72}	ENST00000580107 ncrna:miRNA chromosome:GRCh37:7:2566708:2566779:1 gene:ENSG00000264357 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580107 ncrna:miRNA chromosome:GRCh37:7:2566708:2566779:1 gene:ENSG00000264357 gene_biotype:miRNA transcript_biotype:miRNA	chr7	  2566708	  2566779	+	ENSG00000264357	ENST00000580107	NA	NA	LFNG	NA	chr7:2556708-2568811	inner
CUST_37878_PI429285431	5.363541	P	5.520178	P	0.897113856261049	0	lncRNA	38969-1_{1..597}	n346413|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1963|NULL|-1.3219000|-0.1259186	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346413|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1963|NULL|-1.3219000|-0.1259186	chr16	 22448307	 22448903	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18041_PI429285431	6.324416	P	6.672818	P	0.785453623316495	0	lncRNA	19776-2_{3001..4796}	lnc-TPRA1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPRA1-1:2	chr3	127257029	127258824	-	lnc-TPRA1-1	lnc-TPRA1-1:2	XLOC_003240	linc-TXNRD3-3	NA	NA	NA	inter
CUST_1236_PI429285431	2.8313332	A	3.0532346	A	0.857434635411947	0	lncRNA	1228-1_{1..1642}	"transcript_id ""ENST00000417485.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417485.2"" | genecode_v17"	chr2	216410921	216412562	+	ENSG00000237525.2	ENST00000417485.2	AC012668.2	AC012668.2-001	NA	NA	NA	inter
CUST_15867_PI429285431	1.3192363	A	1.5018653	A	0.881095925513113	0	lncRNA	17556-1_{1..1706}	lnc-CHIC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHIC1-2:1	chrX	 73072107	 73073812	+	lnc-CHIC1-2	lnc-CHIC1-2:1	XLOC_008015	linc-ZCCHC13-2	NA	NA	NA	inter
CUST_13607_PI429285431	1.4182906	A	1.2684634	A	1.10943658041904	0	lncRNA	15246-1_{1..448}	lnc-CLDN20-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLDN20-3:1	chr6	156327552	156327999	+	lnc-CLDN20-3	lnc-CLDN20-3:1	XLOC_005513	linc-ARID1B-3	NA	NA	NA	inter
CUST_38714_PI429285431	7.570694	P	7.577124	P	0.995552981030693	0	lncRNA	39708-1_{1..1375}	n384175|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003azm.2||0.1115330|-0.2014665	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384175|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003azm.2||0.1115330|-0.2014665	chr22	 41581220	 41582594	-	NA	NA	NA	NA	EP300	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10chr22:41571220-41576081"	NA	inter
CUST_29728_PI429285431	7.92222	P	8.118394	P	0.872862310948421	0	lncRNA	31490-1_{1..679}	n333400|BC008968|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087180|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087180|4.1403600|-0.2539072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333400|BC008968|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087180|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087180|4.1403600|-0.2539072	chr17	  8415786	  8416464	-	NA	NA	NA	NA	MYH10	NA	chr17:8405786-8434218	inner
CUST_31909_PI429285431	9.691282	P	10.238553	P	0.684313351077434	0	lncRNA	33639-1_{1..1412}	n338464|BC040156|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|861|NULL|-0.6892150|-0.1707879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338464|BC040156|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|861|NULL|-0.6892150|-0.1707879	chr1	202099183	202100594	+	NA	NA	NA	NA	ARL8A	NA	chr1:202101977-202110553	inter
CUST_32840_PI429285431	0.91214305	A	1.0079849	A	0.935726067648685	0	lncRNA	34474-1_{1..1354}	n339495|AJ001875|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1935|NULL|-1.0327600|-0.1587056	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339495|AJ001875|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1935|NULL|-1.0327600|-0.1587056	chr21	 39030638	 39031991	+	NA	NA	NA	NA	KCNJ6	NA	chr21:39020638-39041992	inner
CUST_153_PI429201921	2.9060645	A	2.7450032	A	1.11810935833617	0	lncRNA	132-2_{...	TC6_mcf_hap5000192.hg.1	TCONS_00029978-XLOC_014463 // Rinn lincRNAs // linc-GPR158-2 chr6_mcf_hap5:-:130806-134856 // chr6_mcf_hap5 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6_mcf_hap5:-:130806-134856	NA	Affy_HUMAN_HTA2.0	TCONS_00029978-XLOC_014463	linc-GPR158-2	chr6_mcf_hap5	   130806	   134856	-	NA	NA	NA	NA	PRDM16	NA	chr1:2985742-2994333	Unknown
CUST_33678_PI429285431	1.4774837	A	0.91548336	A	1.47631475360595	0	lncRNA	35239-1_{1..1782}	n340447|BC040634|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2908|NULL|-0.7850590|-0.1600067	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340447|BC040634|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2908|NULL|-0.7850590|-0.1600067	chr17	  1921176	  1922957	+	NA	NA	NA	NA	RTN4RL1	NA	chr17:1911176-1928178	inner
CUST_48573_PI429285431	1.2019582	A	0.89727724	A	1.23514546478436	0	lncRNA	52421-1_{1..1440}	hg19_lincRNAsTranscripts_TCONS_l2_00013434 range=chr2:3523465-3527853 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013434 range=chr2:3523465-3527853 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	  3523465	  3524904	+	NA	NA	NA	NA	ADI1	NA	chr2:3513465-3523350	inter
CUST_4435_PI429285431	5.4932094	P	5.3855205	P	1.07750076978442	0	lncRNA	4385-1_{1..495}	"transcript_id ""ENST00000535511.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535511.1"" | genecode_v17"	chr12	119825796	119826290	-	ENSG00000248636.2	ENST00000535511.1	RP11-768F21.1	RP11-768F21.1-003	TMEM233	NA	chr12:120031264-120042045	inner
CUST_34884_PI429285431	4.8788366	P	4.8758445	P	1.00207611783335	0	lncRNA	36309-1_{1..2906}	n341799|AF129263|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4277|NULL|-0.2436760|-0.1118257	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341799|AF129263|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4277|NULL|-0.2436760|-0.1118257	chr9	136519707	136522612	-	NA	NA	NA	NA	SARDH	"hg19_refFlat_DBH:range=chr9:136501494-1365235695'pad=0,hg19_refFlat_DBH:range=chr9:136501494-1365235695'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60chr9:136528682-136532653"	NA	inner
LNCA_21_P0013023	2.6675527	A	2.939232	A	0.828354777759387	0	lncRNA	AK125083	NA	AK125083	NA	Hs.485258	RAB44	"RAB44, member RAS oncogene family"	NA	THC2484585	GO:0005886|GO:0000166|GO:0007264|GO:0015031|GO:0005525	"BROAD Institute lincRNA (XLOC_l2_012524), lincRNA [TCONS_l2_00024199]"	chr6:36700062-36700121	hs|6p21.2	Agilent_HUMAN_G3V2	AK125083	AK125083	chr6	 36700062	 36700121	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49980_PI429285431	2.8332589	A	2.747892	A	1.06095752521791	0	lncRNA	53721-1_{1..2977}	hg19_lincRNAsTranscripts_TCONS_l2_00026268 range=chr7:149734539-149745413 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026268 range=chr7:149734539-149745413 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	149734539	149737515	+	NA	NA	NA	NA	NA	"hg19_refFlat_DPP6:range=chr7:153749906-1546841905'pad=0,hg19_refFlat_DPP6:range=chr7:153749906-1546841905'pad=0 3'pad=0 strand=+ repeatMasking=none,-114.10"	NA	inter
LNCA_21_P0005451	2.933681	P	3.5708518	P	0.64297261597791	0	lncRNA	TCONS_00013652	NA	NA	NA	NA	XLOC_006308	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006308), lincRNA [TCONS_00013652]"	chr7:156016190-156017660	hs|7q36.3	Agilent_HUMAN_G3V2	TCONS_00013652	TCONS_00013652	chr7	156016190	156017660	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25875_PI429285431	4.254363	P	1.7245083	A	5.7751351141936	0	lncRNA	27395-2_{3001..3307}	lnc-LYZL1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-LYZL1-3:3	chr10	 29715718	 29716024	+	lnc-LYZL1-3	lnc-LYZL1-3:3	ENSG00000224597.3	RP11-534G20.3	NA	NA	NA	inter
LNCA_21_P0008176	0.87828034	A	0.88258594	A	0.997020034437411	0	lncRNA	TCONS_00022042	NA	NA	NA	NA	XLOC_010642	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010642), lincRNA [TCONS_00022042]"	chr13:64196175-64196116	hs|13q21.31	Agilent_HUMAN_G3V2	TCONS_00022042	TCONS_00022042	chr13	 64196116	 64196175	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51983_PI429285431	0.89331627	A	0.894343	A	0.999288578175895	0	lncRNA	55521-1_{1..752}	hg19_lincRNAsTranscripts_TCONS_l2_00017424 range=chr21:15316065-15344450 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017424 range=chr21:15316065-15344450 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 15316065	 15316816	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3548_PI429285431	9.129775	P	9.796635	P	0.629876110567082	0	lncRNA	3518-1_{1..783}	"transcript_id ""ENST00000444125.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000444125.1"" | genecode_v17"	chr9	132099158	132099940	+	ENSG00000233901.1	ENST00000444125.1	RP11-65J3.1	RP11-65J3.1-003	NA	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60"	NA	inter
CUST_8022_PI429285431	6.3827033	P	6.4666176	P	0.943494295351944	0	lncRNA	9632-1_{1..531}	lnc-EIF3F-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-EIF3F-1:1	chr11	  8089157	  8089687	+	lnc-EIF3F-1	lnc-EIF3F-1:1	ENSG00000248332	ENSG00000248332.2	TUB	NA	chr11:8079157-8099487	inner
CUST_27083_PI429285431	1.7535185	A	0.91554034	A	1.78754326408102	0	lncRNA	28615-1_{1..435}	n324193|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316690|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316690|-1.0513700|-0.3963481	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324193|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316690|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316690|-1.0513700|-0.3963481	chr7	117426147	117426581	-	NA	NA	NA	NA	CTTNBP2	NA	chr7:117416147-117441335	inner
CUST_51813_PI429285431	4.5532236	P	4.249803	P	1.23406689439946	0	lncRNA	55367-1_{1..2277}	hg19_lincRNAsTranscripts_TCONS_l2_00012432 range=chr19:28283232-28289139 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012432 range=chr19:28283232-28289139 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 28283232	 28285508	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20310_PI429285431	4.116442	P	4.644631	P	0.69342463664735	0	lncRNA	21953-1_{1..558}	lnc-LOX-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LOX-5:1	chr5	121812483	121813040	-	lnc-LOX-5	lnc-LOX-5:1	ENSG00000250328.1	CTC-210G5.1	NA	"hg19_refFlat_SNCAIP:range=chr5:121726876-1217992705'pad=0,hg19_refFlat_SNCAIP:range=chr5:121726876-1217992705'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_SNCAIP:range=chr5:121726830-1217991915'pad=0,hg19_refFlat_SNCAIP:range=chr5:121726830-1217991915'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50"	NA	inter
LNCA_21_P0007592	3.7599251	P	4.8691735	P	0.463535455850234	0	lncRNA	TCONS_00020486	NA	NA	NA	NA	XLOC_009813	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009813), lincRNA [TCONS_00020486]"	chr12:78177651-78177710	hs|12q21.2	Agilent_HUMAN_G3V2	TCONS_00020486	TCONS_00020486	chr12	 78177651	 78177710	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006088	0.8754721	A	0.93153924	A	0.961882689621088	0	lncRNA	ENST00000427523	NA	NA	NA	NA	XLOC_007770	NA	ENST00000427523	THC2740888	NA	"BROAD Institute lincRNA (XLOC_007770), lincRNA [TCONS_00015844]"	chr9:93229144-93226072	hs|9q22.2	Agilent_HUMAN_G3V2	ENST00000427523	ENST00000427523	chr9	 93226072	 93229144	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31056_PI429285431	14.186704	P	14.447921	P	0.834383769602009	0	lncRNA	32846-1_{1..220}	n337280|BC128048|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389594|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389594|-1.2345900|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337280|BC128048|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389594|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389594|-1.2345900|-1.0000000	chr1	 65613828	 65614047	-	NA	NA	NA	NA	AK4	NA	chr1:65613232-65624048	inner
LNCA_21_P0005312	0.875695	A	1.3632019	A	0.71325660162292	0	lncRNA	ENST00000420758	NA	NA	NA	NA	XLOC_006487	NA	ENST00000420758	NA	NA	"BROAD Institute lincRNA (XLOC_006487), lincRNA [TCONS_00013189]"	chr7:67156351-67156292	hs|7q11.22	Agilent_HUMAN_G3V2	ENST00000420758	ENST00000420758	chr7	 67156292	 67156351	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43949_PI429285431	1.2015026	A	0.8728678	A	1.25582444483199	0	lncRNA	48659-1_{1..640}	"gi|410170442|ref|XR_171078.1| PREDICTED: Homo sapiens uncharacterized LOC101060103 (LOC101060103), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170442|ref|XR_171078.1| PREDICTED: Homo sapiens uncharacterized LOC101060103 (LOC101060103), misc_RNA"	NA	NA	NA	NA	NA	XR_171078.1	NA	NA	NA	NA	NA	Unknown
CUST_45519_PI429285431	1.80733	A	2.1068668	A	0.812513224669865	0	lncRNA	49928-1_{1..3000}	"gi|301171620|ref|NR_034181.1| Homo sapiens suppressor of variegation 3-9 homolog 2 (Drosophila) (SUV39H2), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301171620|ref|NR_034181.1| Homo sapiens suppressor of variegation 3-9 homolog 2 (Drosophila) (SUV39H2), transcript variant 6, non-coding RNA"	Chr10	 14920782	 14923781	+	79723	NR_034181.1	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80"	NA	inter
CUST_22085_PI429285431	5.078759	P	5.1788917	P	0.932947174520444	0	lncRNA	23690-1_{1..688}	lnc-SERGEF-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SERGEF-1:1	chr11	 18044345	 18045032	-	lnc-SERGEF-1	lnc-SERGEF-1:1	ENSG00000255448.1	RP1-59M18.2	SERGEF	NA	chr11:18034345-18034637	inner
CUST_1258_PI429285431	0.8775375	A	0.8752788	A	1.00156683774631	0	lncRNA	1250-1_{1..574}	"transcript_id ""ENST00000431435.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431435.1"" | genecode_v17"	chr2	226264426	226264999	+	ENSG00000232784.1	ENST00000431435.1	AC067961.1	AC067961.1-001	KIAA1486	NA	chr2:226265602-226275304	inter
CUST_22434_PI429285431	6.820448	P	6.276597	P	1.45785880494383	0	lncRNA	24022-1_{1..395}	lnc-EIF6-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF6-1:9	chr20	 33865812	 33866206	-	lnc-EIF6-1	lnc-EIF6-1:9	ENSG00000126005.10	MT1P3	MMP24	NA	chr20:33855812-33864804	inter
CUST_30423_PI429285431	6.2448683	P	6.5137324	P	0.829972764264715	0	lncRNA	32203-1_{1..869}	n335558|CR407631|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267128|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267128|4.4628300|-0.2842296	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335558|CR407631|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000267128|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000267128|4.4628300|-0.2842296	chr8	 18257514	 18258382	+	NA	NA	NA	NA	NAT2	NA	chr8:18247514-18258723	inner
CUST_26699_PI429285431	1.042357	A	0.88129413	A	1.11811057510936	0	lncRNA	28203-4_{9001..12000}	n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	chr13	 70690309	 70693308	+	NA	NA	NA	NA	KLHL1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0,hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0 3'pad=0 strand=- repeatMasking=none,-105.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr13:70671309-70682625"	NA	inner
LNCA_19_P00809915	3.1514812	P	3.443933	P	0.816513248597241	0	lncRNA	TCONS_00014745	NA	NA	NA	NA	XLOC_006829	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006829), lincRNA [TCONS_00014745]"	chr8:67837463-67837522	hs|8q13.1	Agilent_HUMAN_G3V2	TCONS_00014745	TCONS_00014745	chr8	 67837463	 67837522	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21698_PI429285431	1.7234693	A	1.5944331	A	1.09356289674178	0	lncRNA	23309-1_{1..448}	lnc-TGFB3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TGFB3-1:1	chr14	 76314014	 76314461	-	lnc-TGFB3-1	lnc-TGFB3-1:1	ENSG00000259103.1	RP11-270M14.4	TTLL5	NA	chr14:76304014-76324041	inner
CUST_30515_PI429285431	7.4261723	P	7.061344	P	1.28772836349631	0	lncRNA	32295-1_{1..1128}	n335672|CR614815|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000294010|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000294010|1.2738000|-0.3394108	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335672|CR614815|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000294010|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000294010|1.2738000|-0.3394108	chr7	 89976011	 89977138	+	NA	NA	NA	NA	GTPBP10	NA	chr7:89975979-90020769	inner
LNCA_21_P0008057	0.87540984	A	0.87486374	A	1.00037859932594	0	lncRNA	TCONS_00021769	NA	NA	NA	NA	XLOC_010364	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010364), lincRNA [TCONS_00021769]"	chr13:43059837-43059896	hs|13q14.11	Agilent_HUMAN_G3V2	TCONS_00021769	TCONS_00021769	chr13	 43059837	 43059896	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001114	5.5043907	P	5.636405	P	0.912556443234885	0	lncRNA	ENST00000422638	NA	NA	NA	NA	XLOC_000765	NA	ENST00000422638	THC2682660	NA	"BROAD Institute lincRNA (XLOC_000765), lincRNA [TCONS_00000495]"	chr1:30181757-30181698	hs|1p35.3	Agilent_HUMAN_G3V2	ENST00000422638	ENST00000422638	chr1	 30181698	 30181757	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42525_PI429285431	8.496369	P	8.481439	P	1.01040242026617	0	lncRNA	45318-1_{1..142}	ENST00000383923 ncrna:snoRNA chromosome:GRCh37:12:69021014:69021155:-1 gene:ENSG00000206650 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000383923 ncrna:snoRNA chromosome:GRCh37:12:69021014:69021155:-1 gene:ENSG00000206650 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 69021014	 69021155	-	ENSG00000206650	ENST00000383923	NA	NA	RAP1B	NA	chr12:69011014-69031155	inner
CUST_42328_PI429285431	0.87237173	A	1.534245	A	0.632057068287589	0	lncRNA	44973-1_{1..75}	ENST00000363072 ncrna:snoRNA chromosome:GRCh37:14:101442814:101442888:1 gene:ENSG00000199942 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363072 ncrna:snoRNA chromosome:GRCh37:14:101442814:101442888:1 gene:ENSG00000199942 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101442814	101442888	+	ENSG00000199942	ENST00000363072	NA	NA	NA	NA	NA	inter
LNCA_33_P3341519	0.86753637	A	0.86678386	A	1.00052173624187	0	lncRNA	XR_110540	XR_110540	XR_110540	100130507	Hs.680596	LOC100130507	uncharacterized LOC100130507	NA	THC2684737	NA	"PREDICTED: Homo sapiens hypothetical LOC100130507 (LOC100130507), miscRNA [XR_110540]"	chr11:134208594-134208535	hs|11q25	Agilent_HUMAN_G3V2	XR_110540	XR_110540	chr11	134208535	134208594	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29318_PI429285431	1.0332395	A	1.1653029	A	0.912525386249424	0	lncRNA	31069-1_{1..723}	n332506|DQ925677|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468683|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468683|2.5037800|-0.0926782	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332506|DQ925677|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468683|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468683|2.5037800|-0.0926782	chr9	134473664	134474386	-	NA	NA	NA	NA	RAPGEF1	NA	chr9:134463664-134507278	inner
CUST_14840_PI429285431	0.90040326	A	0.90740925	A	0.99515558997365	0	lncRNA	16501-1_{1..349}	lnc-C14orf101-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C14orf101-3:1	chr14	 57265704	 57266052	+	lnc-C14orf101-3	lnc-C14orf101-3:1	XLOC_010844	linc-MUDENG	OTX2	NA	chr14:57267425-57276023	inter
CUST_31002_PI429285431	0.9247413	A	0.9853671	A	0.958848108117389	0	lncRNA	32790-1_{1..928}	n337165|AF494233|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000384058|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000384058|3.8688200|-0.1595276	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337165|AF494233|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000384058|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000384058|3.8688200|-0.1595276	chr12	 11285915	 11286842	-	NA	NA	NA	NA	TAS2R30	NA	chr12:11285884-11286843	inter
LNCA_21_P0009293	2.895711	A	2.942749	A	0.967921531898903	0	lncRNA	TCONS_00025544	NA	NA	NA	NA	XLOC_012371	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012371), lincRNA [TCONS_00025544]"	chr17:6857087-6857028	hs|17p13.1	Agilent_HUMAN_G3V2	TCONS_00025544	TCONS_00025544	chr17	  6857028	  6857087	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43688_PI429285431	2.2407434	A	2.6790295	A	0.738010833836901	0	lncRNA	48440-1_{1..3000}	"gi|384081583|ref|NR_047564.1| Homo sapiens crumbs homolog 1 (Drosophila) (CRB1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384081583|ref|NR_047564.1| Homo sapiens crumbs homolog 1 (Drosophila) (CRB1), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NR_047564.1	NA	NA	NA	NA	NA	Unknown
CUST_15381_PI429285431	1.275919	A	0.9133171	A	1.28574264421674	0	lncRNA	17064-1_{1..284}	lnc-CLEC2D-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLEC2D-7:1	chr12	  9493053	  9493336	+	lnc-CLEC2D-7	lnc-CLEC2D-7:1	XLOC_009649	linc-CLEC2D-6	NA	NA	NA	inter
LNCA_21_P0013809	6.424902	P	6.51183	P	0.941525451699996	0	lncRNA	TCONS_l2_00030464	NA	NA	NA	NA	XLOC_l2_015697	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015697), lincRNA [TCONS_l2_00030464]"	chrX:23093882-23093823	hs|Xp22.11	Agilent_HUMAN_G3V2	TCONS_l2_00030464	TCONS_l2_00030464	chrX	 23093823	 23093882	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48902_PI429285431	0.90870476	A	0.92165947	A	0.991060674782567	0	lncRNA	52743-1_{1..1842}	hg19_lincRNAsTranscripts_TCONS_l2_00019866 range=chr3:116428635-116435885 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019866 range=chr3:116428635-116435885 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	116428635	116430476	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37590_PI429285431	1.8265041	A	3.0234008	A	0.43621258550601	0	lncRNA	38691-1_{1..327}	n346068|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1618|NULL|-1.3586400|-0.1664976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346068|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1618|NULL|-1.3586400|-0.1664976	chr14	 65763796	 65764122	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_848_PI429285431	1.4780751	A	1.7181927	A	0.846676293486364	0	lncRNA	842-1_{1..423}	"transcript_id ""ENST00000438085.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438085.1"" | genecode_v17"	chr2	 38633861	 38634283	-	ENSG00000231367.1	ENST00000438085.1	AC016995.3	AC016995.3-004	NA	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.11;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-31.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20"	NA	inter
CUST_41650_PI429285431	2.58263	A	2.7574925	A	0.885851943623495	0	lncRNA	43064-1_{1..84}	ENST00000581740 ncrna:miRNA chromosome:GRCh37:19:50185328:50185411:1 gene:ENSG00000264413 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581740 ncrna:miRNA chromosome:GRCh37:19:50185328:50185411:1 gene:ENSG00000264413 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 50185328	 50185411	+	ENSG00000264413	ENST00000581740	NA	NA	CPT1C	NA	chr19:50194365-50195411	inter
CUST_4051_PI429285431	0.9057803	A	0.90489423	A	1.00061436556754	0	lncRNA	4013-1_{1..400}	"transcript_id ""ENST00000531846.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531846.1"" | genecode_v17"	chr11	 92973299	 92973698	+	ENSG00000255233.1	ENST00000531846.1	RP11-755E23.3	RP11-755E23.3-001	NA	NA	NA	inter
CUST_32524_PI429285431	7.036501	P	6.959707	P	1.05467171151497	0	lncRNA	34191-1_{1..334}	n339131|U23860|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1561|NULL|-0.1699060|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339131|U23860|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1561|NULL|-0.1699060|-1.0000000	chr16	 24788313	 24788646	-	NA	NA	NA	NA	TNRC6A	"hg19_refFlat_TNRC6A:range=chr16:24741163-248351285'pad=0,hg19_refFlat_TNRC6A:range=chr16:24741163-248351285'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.80chr16:24778313-24798648"	NA	inner
CUST_23900_PI429285431	3.9134312	P	3.869465	P	1.03094416516565	0	lncRNA	25457-1_{1..220}	lnc-RP11-503N18.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RP11-503N18.3.1-1:1	chr4	  2465700	  2465919	+	lnc-RP11-503N18.3.1-1	lnc-RP11-503N18.3.1-1:1	ENSG00000248399.1	RP11-503N18.4	RNF4	NA	chr4:2470795-2475851	inter
CUST_12264_PI429285431	2.095132	A	1.3798426	A	1.64181252692004	0	lncRNA	13871-1_{1..588}	lnc-CECR2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CECR2-2:1	chr22	 17741777	 17742364	+	lnc-CECR2-2	lnc-CECR2-2:1	XLOC_014143	linc-CECR2-1	NA	NA	NA	inter
CUST_24614_PI429285431	0.92766976	A	1.120388	A	0.874955628060398	0	lncRNA	26163-1_{1..565}	lnc-PHF14-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PHF14-1:5	chr7	 11559679	 11560243	+	lnc-PHF14-1	lnc-PHF14-1:5	ENSG00000230333.1	AC004538.3	THSD7A	NA	chr7:11549679-11569802	inner
CUST_36636_PI429285431	0.88513064	A	2.2210846	A	0.396130046759385	0	lncRNA	37827-3_{6001..9000}	n345130|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_679|NULL|-1.3165200|-0.3125917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345130|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_679|NULL|-1.3165200|-0.3125917	chr11	122017860	122020859	+	NA	NA	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
LNCA_21_P0004874	6.7438087	P	6.9989314	P	0.837915867597491	0	lncRNA	TCONS_00011788	NA	NA	NA	NA	XLOC_005263	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005263), lincRNA [TCONS_00011788]"	chr6:33895998-33896057	hs|6p21.31	Agilent_HUMAN_G3V2	TCONS_00011788	TCONS_00011788	chr6	 33895998	 33896057	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20902_PI429285431	0.95572025	A	0.87914246	A	1.05451366461095	0	lncRNA	22533-1_{1..308}	lnc-BACH1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-BACH1-1:4	chr21	 30656511	 30656818	+	lnc-BACH1-1	lnc-BACH1-1:4	ENSG00000215533.4	LINC00189	BACH1	NA	chr21:30646511-30666528	inter
LNCA_21_P0005483	9.64226	P	9.814057	P	0.887736240851873	0	lncRNA	TCONS_00013748	NA	NA	NA	NA	XLOC_006388	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006388), lincRNA [TCONS_00013748]"	chr7:26590507-26590448	hs|7p15.2	Agilent_HUMAN_G3V2	TCONS_00013748	TCONS_00013748	chr7	 26590448	 26590507	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11853_PI429285431	5.8344235	P	5.736665	P	1.07010955239724	0	lncRNA	13430-1_{1..324}	lnc-AL590822.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AL590822.1-1:1	chr1	  2151974	  2152297	-	lnc-AL590822.1-1	lnc-AL590822.1-1:1	XLOC_000677	linc-C1orf86	SKI	NA	chr1:2160134-2162175	inter
CUST_43764_PI429285431	9.964974	P	9.825172	P	1.10175389733369	0	lncRNA	48501-1_{1..1026}	"gi|410170425|ref|XR_159120.2| PREDICTED: Homo sapiens uncharacterized LOC100996568 (LOC100996568), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170425|ref|XR_159120.2| PREDICTED: Homo sapiens uncharacterized LOC100996568 (LOC100996568), misc_RNA"	NA	NA	NA	NA	NA	XR_159120.2	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014188	4.4680996	P	5.008871	P	0.687403260572053	0	lncRNA	XR_108761	XR_108761	XR_108761	NA	NA	LOC401317	uncharacterized LOC401317	ENST00000482692	THC2618295	NA	"PREDICTED: Homo sapiens hypothetical LOC401317 (LOC401317), miscRNA [XR_108761]"	chr7:28450137-28450196	hs|7p15.1	Agilent_HUMAN_G3V2	XR_108761	XR_108761	chr7	 28450137	 28450196	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006302	0.8772589	A	1.8439772	A	0.511668633306432	0	lncRNA	TCONS_00016439	NA	NA	NA	NA	XLOC_007807	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007807), lincRNA [TCONS_00016439]"	chr9:102337834-102337775	hs|9q22.33	Agilent_HUMAN_G3V2	TCONS_00016439	TCONS_00016439	chr9	102337775	102337834	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33315_PI429285431	1.0374608	A	0.88439816	A	1.11192743495655	0	lncRNA	34897-1_{1..966}	n340031|BC036363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2485|NULL|-1.2157100|-0.2927619	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340031|BC036363|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2485|NULL|-1.2157100|-0.2927619	chr10	 52724029	 52724994	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90"	NA	inter
CUST_22604_PI429285431	0.9064063	A	0.9080252	A	0.998878493388529	0	lncRNA	24189-1_{1..1188}	lnc-DHRS7B-5:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-DHRS7B-5:18	chr17	 20905196	 20906383	+	lnc-DHRS7B-5	lnc-DHRS7B-5:18	ENSG00000233098.3	RP11-344E13.3	USP22	NA	chr17:20902906-20915589	inner
LNCA_21_P0004614	0.87661445	A	0.8748378	A	1.00123223852112	0	lncRNA	XR_110209	XR_110209	XR_110209	NA	Hs.561513	LOC100506389	uncharacterized LOC100506389	NA	THC2603484	NA	"PREDICTED: Homo sapiens hypothetical LOC100506389 (LOC100506389), miscRNA [XR_110209]"	chr6:112221752-112221693	hs|6q21	Agilent_HUMAN_G3V2	XR_110209	XR_110209	chr6	112221693	112221752	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19343_PI429285431	0.87643355	A	0.8744996	A	1.00134141087765	0	lncRNA	21009-1_{1..574}	lnc-C11orf10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf10-2:1	chr11	 61581614	 61582187	-	lnc-C11orf10-2	lnc-C11orf10-2:1	ENSG00000256914.1	RP11-467L20.7	FADS1	NA	chr11:61571614-61584529	inner
CUST_306_PI429201921	2.1169767	A	2.3439825	A	0.854406305952761	0	lncRNA	209-2_{3001..6000}	TC13001368.hg.1	 TCONS_l2_00007500-XLOC_l2_003911 // Broad TUCP // linc-FAM123A chr13:-:25749015-25754139 // chr13 // 100 // 100 // 0 // --- // 0///TCONS_l2_00007499-XLOC_l2_003911 // Broad TUCP // linc-FAM123A chr13:-:25746965-25754217 // chr13 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00007088-XLOC_l2_003911 // Broad TUCP // linc-FAM123A chr13:-:25747054-25748221 // chr13 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr13:-:25746965-25754217	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00007499-XLOC_l2_003911	linc-FAM123A	chr13	 25746965	 25754217	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009982	0.87379646	A	1.9797698	A	0.464588922325986	0	lncRNA	TCONS_00028234	NA	NA	NA	NA	XLOC_013580	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013580), lincRNA [TCONS_00028234]"	chr20:55306441-55306500	hs|20q13.31	Agilent_HUMAN_G3V2	TCONS_00028234	TCONS_00028234	chr20	 55306441	 55306500	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13044_PI429285431	0.9022316	A	1.2469238	A	0.787475967198656	0	lncRNA	14669-1_{1..498}	lnc-CTD-2210P24.4.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2210P24.4.1-3:2	chr11	 45604732	 45605229	+	lnc-CTD-2210P24.4.1-3	lnc-CTD-2210P24.4.1-3:2	XLOC_009122	linc-SLC35C1-3	NA	NA	NA	inter
CUST_14936_PI429285431	1.0947437	A	0.89269423	A	1.15033133752557	0	lncRNA	16599-1_{1..297}	lnc-TMEM135-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM135-2:2	chr11	 87670646	 87670942	+	lnc-TMEM135-2	lnc-TMEM135-2:2	XLOC_009243	linc-TYR-4	NA	NA	NA	inter
CUST_17395_PI429285431	0.9019471	A	0.9098908	A	0.994508977819555	0	lncRNA	19117-1_{1..527}	lnc-PAM-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAM-4:1	chr5	101841132	101841658	+	lnc-PAM-4	lnc-PAM-4:1	XLOC_004492	linc-PAM-4	SLCO6A1	NA	chr5:101831132-101834720	inter
CUST_23963_PI429285431	2.3408675	A	2.9776945	A	0.643125857182894	0	lncRNA	25518-1_{1..1064}	lnc-SOX8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SOX8-1:1	chr16	   983338	   984401	+	lnc-SOX8-1	lnc-SOX8-1:1	ENSG00000260439.1	LA16c-366D3.1	LMF1	NA	chr16:973338-994266	inner
CUST_45369_PI429285431	6.9192786	P	6.657995	P	1.19854460393542	0	lncRNA	49804-1_{1..1027}	"gi|379643060|ref|NR_046421.1| Homo sapiens idnK, gluconokinase homolog (E. coli) (IDNK), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379643060|ref|NR_046421.1| Homo sapiens idnK, gluconokinase homolog (E. coli) (IDNK), transcript variant 2, non-coding RNA"	Chr9	 86237964	 86238990	+	414328	NR_046421.1	NA	NA	NA	NA	NA	inter
CUST_11859_PI429285431	0.9905103	A	1.1297882	A	0.907973501933485	0	lncRNA	13437-1_{1..2746}	lnc-RP11-973F15.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-973F15.1.1-1:1	chr8	123745822	123748567	-	lnc-RP11-973F15.1.1-1	lnc-RP11-973F15.1.1-1:1	XLOC_007199	linc-HAS2-3	NA	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
LNCA_21_P0002452	0.91159284	A	0.93281513	A	0.985397495504383	0	lncRNA	TCONS_00004284	NA	NA	NA	NA	XLOC_002124	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002124), lincRNA [TCONS_00004284]"	chr2:64503094-64503035	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00004284	TCONS_00004284	chr2	 64503035	 64503094	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21821_PI429285431	3.9894726	P	4.0410857	P	0.964856903907386	0	lncRNA	23431-1_{1..1027}	lnc-FAM127A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-FAM127A-2:1	chrX	134257169	134258195	+	lnc-FAM127A-2	lnc-FAM127A-2:1	ENSG00000228372.2	RP11-85L21.4	NA	NA	NA	inter
CUST_15284_PI429285431	0.9115342	A	1.9951602	A	0.47184142837212	0	lncRNA	16961-1_{1..711}	lnc-SCCPDH-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCCPDH-1:12	chr1	246955359	246956069	+	lnc-SCCPDH-1	lnc-SCCPDH-1:12	XLOC_000643	linc-VN1R5-3	LOC100130097	NA	chr1:246945359-246948062	inter
CUST_49334_PI429285431	8.7058115	P	8.40898	P	1.22844349564012	0	lncRNA	53147-1_{1..352}	hg19_lincRNAsTranscripts_TCONS_l2_00023408 range=chr5:68912965-68918094 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023408 range=chr5:68912965-68918094 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 68912965	 68913316	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34249_PI429285431	2.777709	A	2.65525	A	1.08858872604457	0	lncRNA	35753-1_{1..1973}	n341105|BC037792|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3571|NULL|0.3911240|-0.3592914	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341105|BC037792|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3571|NULL|0.3911240|-0.3592914	chr11	101978616	101980588	+	NA	NA	NA	NA	YAP1	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40chr11:101981192-101990570"	NA	inter
LNCA_21_P0001300	5.536618	P	4.4809046	P	2.07874587402699	0	lncRNA	TCONS_00000949	NA	NA	NA	NA	XLOC_000205	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000205), lincRNA [TCONS_00000949]"	chr1:55462642-55462701	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_00000949	TCONS_00000949	chr1	 55462642	 55462701	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12029_PI429285431	9.626603	P	9.841322	P	0.861713983155257	0	lncRNA	13612-1_{1..316}	lnc-SERPINB6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERPINB6-2:1	chr6	  3053804	  3054119	-	lnc-SERPINB6-2	lnc-SERPINB6-2:1	XLOC_005582	linc-SERPINB6-2	NA	NA	NA	inter
LNCA_21_P0005883	0.8975009	A	0.9136252	A	0.988885712102896	0	lncRNA	TCONS_00015133	NA	NA	NA	NA	XLOC_007180	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007180), lincRNA [TCONS_00015133]"	chr8:107158010-107157951	hs|8q23.1	Agilent_HUMAN_G3V2	TCONS_00015133	TCONS_00015133	chr8	107157951	107158010	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014404	0.893916	A	2.5266395	A	0.322478861490969	0	lncRNA	ENST00000422459	XR_109621	XR_109621	NA	NA	LOC100506115	NA	ENST00000422459	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506115, transcript variant 1 (LOC100506115), miscRNA [XR_109621]"	chr20:48895483-48895542	hs|20q13.13	Agilent_HUMAN_G3V2	ENST00000422459	ENST00000422459	chr20	 48895483	 48895542	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31214_PI429285431	0.9997131	A	0.9600572	A	1.02786863846908	0	lncRNA	33006-1_{1..983}	n337661|AL137463|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|41|NULL|-0.6913150|-0.2203793	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337661|AL137463|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|41|NULL|-0.6913150|-0.2203793	chr1	  7549174	  7550156	-	NA	NA	NA	NA	CAMTA1	NA	chr1:7539174-7560066	inner
CUST_14385_PI429285431	0.8890827	A	1.7823608	A	0.538389395875304	0	lncRNA	16046-1_{1..462}	lnc-C9orf170-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf170-1:8	chr9	 89613509	 89613970	+	lnc-C9orf170-1	lnc-C9orf170-1:8	XLOC_007438	linc-C9orf170-1	NA	NA	NA	inter
CUST_22081_PI429285431	3.9701233	P	4.006448	P	0.975135967959517	0	lncRNA	23687-1_{1..753}	lnc-AGA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGA-1:1	chr4	178278149	178278901	-	lnc-AGA-1	lnc-AGA-1:1	ENSG00000249084.1	RP11-376O6.2	NEIL3	NA	chr4:178268149-178284092	inner
LNCA_19_P00329048	7.9936023	P	7.607635	P	1.30673563520154	0	lncRNA	ENST00000522817	NA	NA	NA	NA	XLOC_l2_014585	NA	ENST00000522817	THC2697504	NA	"BROAD Institute lincRNA (XLOC_l2_014585), lincRNA [TCONS_l2_00028313]"	chr8:92072943-92072884	hs|8q21.3	Agilent_HUMAN_G3V2	ENST00000522817	ENST00000522817	chr8	 92072884	 92072943	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18691_PI429285431	2.492379	A	3.2138972	A	0.606458907708881	0	lncRNA	20390-1_{1..493}	lnc-ZNF37A-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF37A-5:1	chr10	 39012283	 39012775	+	lnc-ZNF37A-5	lnc-ZNF37A-5:1	ENSG00000234541	RP11-453N3.2	NA	NA	NA	inter
LNCA_21_P0012160	0.8786875	A	0.883321	A	0.996793454522153	0	lncRNA	ENST00000445589	NA	NA	NA	NA	XLOC_l2_008755	NA	ENST00000445589	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008755), lincRNA [TCONS_l2_00016841]"	chr20:6711995-6711936	hs|20p12.3	Agilent_HUMAN_G3V2	ENST00000445589	ENST00000445589	chr20	  6711936	  6711995	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014506	0.8781435	A	0.88199025	A	0.997337187674137	0	lncRNA	XR_110143	XR_110143	XR_110143	NA	NA	LOC100505529	uncharacterized LOC100505529	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505529 (LOC100505529), miscRNA [XR_110143]"	chr18:54541107-54541166	hs|18q21.31	Agilent_HUMAN_G3V2	XR_110143	XR_110143	chr18	 54541107	 54541166	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006586	1.2753515	A	2.4785092	A	0.434323614365688	0	lncRNA	ENST00000427886	NA	NA	NA	NA	XLOC_008272	NA	ENST00000427886	NA	NA	"BROAD Institute lincRNA (XLOC_008272), lincRNA [TCONS_00017601]"	chrY:1803088-1810881	hs|Yp11.32	Agilent_HUMAN_G3V2	ENST00000427886	ENST00000427886	chrY	  1803088	  1810881	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12864_PI429285431	0.88054085	A	0.9184473	A	0.974067428844643	0	lncRNA	14491-1_{1..2168}	lnc-PCF11-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCF11-1:6	chr11	 82784345	 82786512	+	lnc-PCF11-1	lnc-PCF11-1:6	XLOC_009233	linc-PCF11-2	RAB30	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80chr11:82774345-82782884"	NA	inter
LNCA_21_P0010099	1.9459252	A	1.0004225	A	1.92585982569973	0	lncRNA	TCONS_00028586	NA	NA	NA	NA	XLOC_013605	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013605), lincRNA [TCONS_00028586]"	chr20:61666023-61666937	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028586	TCONS_00028586	chr20	 61666023	 61666937	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002387	1.6614107	A	1.7019451	A	0.972294725375128	0	lncRNA	TCONS_00004111	NA	NA	NA	NA	XLOC_001959	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001959), lincRNA [TCONS_00004111]"	chr2:5848591-5848532	hs|2p25.2	Agilent_HUMAN_G3V2	TCONS_00004111	TCONS_00004111	chr2	  5848532	  5848591	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25706_PI429285431	2.992725	A	2.8301973	A	1.119246417151	0	lncRNA	27234-1_{1..584}	lnc-CHFR-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHFR-2:1	chr12	133532829	133533412	-	lnc-CHFR-2	lnc-CHFR-2:1	ENSG00000256429.1	RP11-46H11.5	ZNF605	NA	chr12:133522829-133532892	inner
CUST_16215_PI429285431	2.42364	A	3.2881997	A	0.54921399742325	0	lncRNA	17921-1_{1..830}	lnc-NAALADL2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAALADL2-1:2	chr3	176282849	176283678	+	lnc-NAALADL2-1	lnc-NAALADL2-1:2	XLOC_002926	linc-KCNMB2-10	NA	NA	NA	inter
CUST_9268_PI429285431	2.7202575	A	1.1306007	A	3.00977741938365	0	lncRNA	10773-1_{1..1594}	lnc-CDS1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CDS1-2:2	chr4	 85927160	 85928753	+	lnc-CDS1-2	lnc-CDS1-2:2	ENSG00000180769	NCRNA00247	NA	NA	NA	inter
LNCA_21_P0013096	2.8208606	A	2.6609142	A	1.11724562862189	0	lncRNA	TCONS_l2_00024924	NA	NA	NA	NA	XLOC_l2_013124	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013124), lincRNA [TCONS_l2_00024924]"	chr6:134844522-134841752	hs|6q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00024924	TCONS_l2_00024924	chr6	134841752	134844522	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_421_PI429285431	4.620697	P	4.3326397	P	1.22099500637191	0	lncRNA	413-1_{1..769}	"transcript_id ""ENST00000418974.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000418974.1"" | genecode_v17"	chr1	144284105	144284873	-	ENSG00000235398.3	ENST00000418974.1	LINC00623	LINC00623-011	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10"	NA	inter
CUST_33906_PI429285431	5.476149	P	5.2386785	P	1.1789238225385	0	lncRNA	35448-1_{1..856}	n340698|BC008431|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3161|NULL|2.0588600|-0.2523317	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340698|BC008431|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3161|NULL|2.0588600|-0.2523317	chr5	155135062	155135917	+	NA	NA	NA	NA	SGCD	NA	chr5:155753767-156031973	inner
CUST_14785_PI429285431	1.5179363	A	1.5765013	A	0.960218741612124	0	lncRNA	16446-1_{1..1569}	lnc-TTC21A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC21A-2:2	chr3	 39251573	 39253141	+	lnc-TTC21A-2	lnc-TTC21A-2:2	XLOC_002617	linc-CCR8-2	LOC729454	NA	chr3:39244498-39256163	inter
CUST_19388_PI429285431	4.7123165	P	4.5696387	P	1.10395227173745	0	lncRNA	21050-1_{1..1975}	lnc-SPEM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPEM1-1:1	chr17	  7345913	  7347887	+	lnc-SPEM1-1	lnc-SPEM1-1:1	ENSG00000262880.1	RP11-104H15.7	TMEM102	NA	chr17:7338762-7340998	inner
CUST_35126_PI429285431	0.9808075	A	1.5721477	A	0.663726048379022	0	lncRNA	36529-1_{1..2288}	n342093|AK130095|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4575|NULL|-1.2557200|-0.2154745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342093|AK130095|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4575|NULL|-1.2557200|-0.2154745	chr6	100035486	100037773	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006808	3.2541637	P	2.4902797	A	1.69805595509165	0	lncRNA	TCONS_00018082	NA	NA	NA	NA	XLOC_008337	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008337), lincRNA [TCONS_00018082]"	chr10:997934-997993	hs|10p15.3	Agilent_HUMAN_G3V2	TCONS_00018082	TCONS_00018082	chr10	   997934	   997993	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35709_PI429285431	0.89215803	A	0.8914641	A	1.00048111131995	0	lncRNA	37129-1_{1..694}	n342876|AF143741|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5381|NULL|-1.0275100|-0.2949107	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342876|AF143741|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5381|NULL|-1.0275100|-0.2949107	chr9	116170092	116170785	+	NA	NA	NA	NA	ALAD	NA	chr9:116160092-116163618	inner
LNCA_21_P0003043	0.8761237	A	0.87493324	A	1.00082550453404	0	lncRNA	TCONS_00006275	NA	NA	NA	NA	XLOC_002876	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002876), lincRNA [TCONS_00006275]"	chr3:151791422-151791481	hs|3q25.1	Agilent_HUMAN_G3V2	TCONS_00006275	TCONS_00006275	chr3	151791422	151791481	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8149_PI429285431	0.90726423	A	0.9121666	A	0.99660770294179	0	lncRNA	9752-1_{1..2132}	lnc-TMEM188-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM188-1:1	chr16	 50106777	 50108908	+	lnc-TMEM188-1	lnc-TMEM188-1:1	ENSG00000250664	ENST00000502353	HEATR3	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20chr16:50099881-50118892"	NA	inner
LNCA_21_P0003024	4.233535	P	4.587738	P	0.782301697197958	0	lncRNA	TCONS_00006196	NA	NA	NA	NA	XLOC_002793	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002793), lincRNA [TCONS_00006196]"	chr3:125485629-125505694	hs|3q21.2	Agilent_HUMAN_G3V2	TCONS_00006196	TCONS_00006196	chr3	125485629	125505694	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009299	2.957022	P	3.399476	P	0.735881820861579	0	lncRNA	ENST00000423323	XR_111668	XR_111668	NA	NA	XLOC_012393	NA	ENST00000423323	THC2623839	NA	"PREDICTED: Homo sapiens hypothetical LOC100506974 (LOC100506974), miscRNA [XR_111668]"	chr17:13680019-13679960	hs|17p12	Agilent_HUMAN_G3V2	ENST00000423323	ENST00000423323	chr17	 13679960	 13680019	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26659_PI429285431	1.2716929	A	1.506341	A	0.849892278301611	0	lncRNA	28159-1_{1..265}	lnc-SENP6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SENP6-2:2	chr6	 76071568	 76071832	+	lnc-SENP6-2	lnc-SENP6-2:2	ENSG00000237174.1	RP11-415D17.3	FILIP1	NA	chr6:76061568-76081727	inner
LNCA_21_P0005749	1.5512915	A	1.3449172	A	1.15378490994583	0	lncRNA	TCONS_00014831	NA	NA	NA	NA	XLOC_006901	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006901), lincRNA [TCONS_00014831]"	chr8:109504747-109504806	hs|8q23.1	Agilent_HUMAN_G3V2	TCONS_00014831	TCONS_00014831	chr8	109504747	109504806	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11052_PI429285431	0.9053456	A	0.9041139	A	1.00085411393004	0	lncRNA	12601-1_{1..374}	lnc-RIMBP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RIMBP2-3:1	chr12	130801583	130801956	-	lnc-RIMBP2-3	lnc-RIMBP2-3:1	XLOC_010264	linc-TMEM132D-6	NA	NA	NA	inter
CUST_20345_PI429285431	3.3075986	P	4.7469535	P	0.368732145766687	0	lncRNA	21987-1_{1..447}	lnc-C15orf41-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C15orf41-3:1	chr15	 37322152	 37322598	+	lnc-C15orf41-3	lnc-C15orf41-3:1	ENSG00000259638.1	RP11-29M5.1	MEIS2	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40chr15:37312152-37332426"	NA	inner
LNCA_21_P0012122	0.91257304	A	0.92968476	A	0.988209123201313	0	lncRNA	XR_109599	XR_109599	XR_109599	NA	Hs.559348	LOC100505663	uncharacterized LOC100505663	ENST00000432633	THC2662387	NA	"PREDICTED: Homo sapiens hypothetical LOC100505663, transcript variant 1 (LOC100505663), miscRNA [XR_109599]"	chr20:38636794-38636853	hs|20q12	Agilent_HUMAN_G3V2	XR_109599	XR_109599	chr20	 38636794	 38636853	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_179_PI429285431	2.5132532	A	2.6351924	A	0.918951610361045	0	lncRNA	169-1_{1..354}	"transcript_id ""ENST00000423486.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423486.1"" | genecode_v17"	chr1	 20725209	 20725562	-	ENSG00000236963.1	ENST00000423486.1	RP4-749H3.1	RP4-749H3.1-003	NA	NA	NA	inter
CUST_31541_PI429285431	3.426638	P	3.0690844	A	1.28125141685121	0	lncRNA	33300-1_{1..1801}	n338029|AK023877|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|416|NULL|6.8083000|-0.1528372	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338029|AK023877|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|416|NULL|6.8083000|-0.1528372	chr1	 85648409	 85650209	-	NA	NA	NA	NA	SYDE2	NA	chr1:85638409-85666728	inner
CUST_313_PI429285431	0.91301924	A	1.0826473	A	0.889071862494905	0	lncRNA	304-1_{1..231}	"transcript_id ""ENST00000435832.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435832.1"" | genecode_v17"	chr1	 90976467	 90976697	-	ENSG00000229201.1	ENST00000435832.1	RP5-827O9.1	RP5-827O9.1-001	NA	NA	NA	inter
CUST_35017_PI429285431	3.7178671	P	3.9132628	P	0.873333326649335	0	lncRNA	36431-1_{1..2593}	n341954|AK023663|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4435|NULL|-0.9852050|-0.3056178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341954|AK023663|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4435|NULL|-0.9852050|-0.3056178	chr12	 66645118	 66647710	+	NA	NA	NA	NA	IRAK3	NA	chr12:66635118-66648402	inner
LNCA_21_P0014179	6.7007985	P	7.566882	P	0.548634214135086	0	lncRNA	XR_108725	XR_108725	XR_108725	NA	NA	LOC100505551	uncharacterized LOC100505551	NA	THC2693752	NA	"PREDICTED: Homo sapiens hypothetical LOC100505551 (LOC100505551), miscRNA [XR_108725]"	chr7:1086426-1086485	hs|7p22.3	Agilent_HUMAN_G3V2	XR_108725	XR_108725	chr7	  1086426	  1086485	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49213_PI429285431	5.233635	P	8.019268	M	0.145024344141187	0	lncRNA	53033-1_{1..690}	hg19_lincRNAsTranscripts_TCONS_l2_00021407 range=chr4:175014441-175075833 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021407 range=chr4:175014441-175075833 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	175014441	175015130	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009339	1.2546915	A	2.4637673	A	0.432545618508045	0	lncRNA	TCONS_00025704	NA	NA	NA	NA	XLOC_012530	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012530), lincRNA [TCONS_00025704]"	chr17:55156660-55156601	hs|17q22	Agilent_HUMAN_G3V2	TCONS_00025704	TCONS_00025704	chr17	 55156601	 55156660	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48625_PI429285431	11.105915	P	11.789228	P	0.622733587920186	0	lncRNA	52472-1_{1..1058}	hg19_lincRNAsTranscripts_TCONS_l2_00013752 range=chr2:88272040-88273168 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013752 range=chr2:88272040-88273168 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 88272040	 88273097	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_31598_PI429285431	2.220038	A	2.1383674	A	1.05824274646796	0	lncRNA	33354-1_{1..232}	n338105|AB015616|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|493|NULL|1.8078700|-0.1470052	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338105|AB015616|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|493|NULL|1.8078700|-0.1470052	chr1	100714653	100714884	+	NA	NA	NA	NA	DBT	NA	chr1:100704653-100715409	inner
CUST_22391_PI429285431	8.034155	P	8.13527	P	0.932312167076551	0	lncRNA	23981-1_{1..613}	lnc-UVRAG-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UVRAG-2:1	chr11	 75905685	 75906297	+	lnc-UVRAG-2	lnc-UVRAG-2:1	ENSG00000254933.1	RP11-619A14.2	WNT11	"hg19_refFlat_WNT11:range=chr11:75898109-759174515'pad=0,hg19_refFlat_WNT11:range=chr11:75898109-759174515'pad=0 3'pad=0 strand=- repeatMasking=none,-106.20chr11:75897370-75916115"	NA	inner
CUST_21526_PI429285431	0.91351736	A	1.0717388	A	0.896129141692286	0	lncRNA	23144-1_{1..364}	lnc-RP11-553A10.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-553A10.1.1-1:2	chr3	110790339	110790702	-	lnc-RP11-553A10.1.1-1	lnc-RP11-553A10.1.1-1:2	ENSG00000242242.1	PVRL3-AS1	PVRL3	NA	chr3:110790865-110800371	inter
CUST_38596_PI429285431	2.1506958	A	1.6834904	A	1.3824290122974	0	lncRNA	39605-1_{1..3000}	n383681|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002suy.1||1.9249000|-0.2692637	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n383681|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002suy.1||1.9249000|-0.2692637	chr2	 96472812	 96475811	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008433	6.2747726	P	6.1661973	P	1.07816299577381	0	lncRNA	TCONS_00022738	NA	NA	NA	NA	XLOC_011014	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011014), lincRNA [TCONS_00022738]"	chr14:48704698-48704639	hs|14q21.3	Agilent_HUMAN_G3V2	TCONS_00022738	TCONS_00022738	chr14	 48704639	 48704698	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001624	3.6991649	P	5.0371323	P	0.395577589199529	0	lncRNA	TCONS_00001821	NA	NA	NA	NA	XLOC_001205	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001205), lincRNA [TCONS_00001821]"	chr1:219150154-219150095	hs|1q41	Agilent_HUMAN_G3V2	TCONS_00001821	TCONS_00001821	chr1	219150095	219150154	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006215	5.4339676	P	5.3105383	P	1.08932111431047	0	lncRNA	TCONS_00016139	NA	NA	NA	NA	XLOC_007531	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007531), lincRNA [TCONS_00016139]"	chr9:118454345-118454404	hs|9q33.1	Agilent_HUMAN_G3V2	TCONS_00016139	TCONS_00016139	chr9	118454345	118454404	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52180_PI429285431	10.379385	P	10.066663	P	1.24204892221052	0	lncRNA	55698-3_{6001..8932}	hg19_lincRNAsTranscripts_TCONS_l2_00017652 range=chr22:24647047-24658668 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017652 range=chr22:24647047-24658668 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 24653047	 24655978	+	NA	NA	NA	NA	SPECC1L	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0,hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40chr22:24653368-24668668"	NA	inter
CUST_24667_PI429285431	0.8777082	A	0.8962772	A	0.987211427730648	0	lncRNA	26214-2_{3001..5850}	lnc-AF131216.6.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AF131216.6.1-1:1	chr8	 11185825	 11188674	-	lnc-AF131216.6.1-1	lnc-AF131216.6.1-1:1	ENSG00000246477.2	AF131216.6	MTMR9	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MTMR9:range=chr8:11142398-111802975'pad=0,hg19_refFlat_MTMR9:range=chr8:11142398-111802975'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50chr8:11172825-11185655"	NA	inner
CUST_39905_PI429285431	1.9822044	A	1.7578199	A	1.16827871703371	0	lncRNA	40789-1_{1..3000}	n406639|NR_024168|lncRNA|Homosapiens||RefGeneNoncode|NR_024168||6.0081600|-0.2357121	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406639|NR_024168|lncRNA|Homosapiens||RefGeneNoncode|NR_024168||6.0081600|-0.2357121	chr9	120466459	120469458	+	NA	NA	NA	NA	TLR4	NA	chr9:120466460-120479768	inner
CUST_32560_PI429285431	10.130022	P	7.2908106	P	7.15628775768503	0	lncRNA	34224-1_{1..2099}	n339176|CR623190|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1607|NULL|-1.1369100|-0.3462264	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339176|CR623190|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1607|NULL|-1.1369100|-0.3462264	chr2	235401689	235403787	-	NA	NA	NA	NA	ARL4C	NA	chr2:235401685-235405693	inner
CUST_47562_PI429285431	4.999286	P	4.360217	P	1.55732386271269	0	lncRNA	51568-2_{3001..3495}	"gi|282165725|ref|NR_033181.1| Homo sapiens synapse associated protein 1 (SYAP1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|282165725|ref|NR_033181.1| Homo sapiens synapse associated protein 1 (SYAP1), transcript variant 2, non-coding RNA"	ChrX	 16740707	 16741201	+	94056	NR_033181.1	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50"	NA	inter
CUST_30220_PI429285431	5.0175557	P	5.3317914	P	0.804276961627647	0	lncRNA	31995-1_{1..384}	n335071|AJ608791|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249225|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249225|-0.6603730|-0.1781581	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335071|AJ608791|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000249225|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000249225|-0.6603730|-0.1781581	chr6	 41658854	 41659237	-	NA	NA	NA	NA	TFEB	NA	chr6:41651716-41701464	inner
CUST_28165_PI429285431	1.4857478	A	1.2676964	A	1.16316148165366	0	lncRNA	29792-2_{3001..6000}	n325444|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323302|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323302|-0.9757700|-0.2673879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325444|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323302|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323302|-0.9757700|-0.2673879	chr2	  8620413	  8623412	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014943	4.205922	P	4.383425	P	0.884232091382643	0	lncRNA	XR_133511	XR_133511	XR_133511	NA	Hs.601664	LOC100653284	uncharacterized LOC100653284	NA	THC2694257	NA	"PREDICTED: Homo sapiens hypothetical LOC100653284 (LOC100653284), miscRNA [XR_133511]"	chr9:032464315-032464374	hs|9p21.1	Agilent_HUMAN_G3V2	XR_133511	XR_133511	chr9	 32464315	 32464374	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3379763	5.3705473	P	5.5437737	P	0.886857121054511	0	lncRNA	XR_132645	XR_132645	XR_132645	100289186	NA	LOC100289186	"succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene"	NA	NA	NA	"PREDICTED: Homo sapiens succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like (LOC100289186), miscRNA [XR_132645]"	chr18:12102003-12101982	hs|18p11.21	Agilent_HUMAN_G3V2	XR_132645	XR_132645	chr18	 12101982	 12102003	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13306_PI429285431	3.4761336	P	3.9802027	P	0.705115206903911	0	lncRNA	14941-1_{1..408}	lnc-MAFK-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAFK-2:1	chr7	  1501407	  1501814	+	lnc-MAFK-2	lnc-MAFK-2:1	XLOC_005963	linc-MAFK-1	MICALL2	NA	chr7:1491407-1499109	inter
CUST_39161_PI429285431	3.3389144	P	2.6637697	A	1.59675691684127	0	lncRNA	40138-1_{1..2908}	n385835|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004fal.3||2.2661400|-0.2469309	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385835|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004fal.3||2.2661400|-0.2469309	chrX	137696891	137699798	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39501_PI429285431	6.4427624	P	6.894729	P	0.731045648526594	0	lncRNA	40448-1_{1..2011}	n387236|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011aiq.1||2.3781000|-0.2252565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387236|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011aiq.1||2.3781000|-0.2252565	chr22	 22652462	 22654472	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14588_PI429285431	2.852653	A	3.0571785	P	0.867824066111468	0	lncRNA	16255-1_{1..1397}	lnc-ATP2B2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP2B2-1:1	chr3	 10780351	 10781747	-	lnc-ATP2B2-1	lnc-ATP2B2-1:1	XLOC_003044	linc-ATP2B2-3	NA	NA	NA	inter
LNCA_21_P0002912	3.855826	P	3.7211275	P	1.09786335407331	0	lncRNA	ENST00000482559	NA	NA	NA	NA	XLOC_003344	NA	ENST00000482559	NA	NA	"BROAD Institute lincRNA (XLOC_003344), lincRNA [TCONS_00005900]"	chr3:181252494-181252435	hs|3q26.33	Agilent_HUMAN_G3V2	ENST00000482559	ENST00000482559	chr3	181252435	181252494	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48214_PI429285431	0.9087371	A	0.90985775	A	0.999223526224007	0	lncRNA	52077-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00001295 range=chr1:79518696-79561296 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001295 range=chr1:79518696-79561296 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 79518696	 79521695	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002025	2.3094602	A	3.527937	P	0.429736195027914	0	lncRNA	ENST00000420130	NA	NA	NA	NA	XLOC_002001	NA	ENST00000420130	NA	NA	"BROAD Institute lincRNA (XLOC_002001), lincRNA [TCONS_00003216]"	chr2:16497957-16497898	hs|2p24.3	Agilent_HUMAN_G3V2	ENST00000420130	ENST00000420130	chr2	 16497898	 16497957	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15102_PI429285431	1.118369	A	4.6844316	P	0.0844322166045418	0	lncRNA	16767-1_{1..305}	lnc-SLC22A16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC22A16-1:1	chr6	110869005	110869309	-	lnc-SLC22A16-1	lnc-SLC22A16-1:1	XLOC_005803	linc-SLC22A16	NA	NA	NA	inter
CUST_31472_PI429285431	0.91682523	A	0.914446	A	1.00165051717294	0	lncRNA	33239-1_{1..3000}	n337952|AL137323|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|337|NULL|-0.8680140|-0.2421241	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337952|AL137323|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|337|NULL|-0.8680140|-0.2421241	chr1	 54604045	 54607044	+	NA	NA	NA	NA	CDCP2	"hg19_refFlat_CDCP2:range=chr1:54605193-546185955'pad=0,hg19_refFlat_CDCP2:range=chr1:54605193-546185955'pad=0 3'pad=0 strand=- repeatMasking=none,-100.90chr1:54604668-54618653"	NA	inner
LNCA_23_P336854	13.846789	P	13.393009	P	1.36962410680082	0	lncRNA	XR_133285	XR_133285	XR_133285	   648771	NA	LOC648771	60S ribosomal protein L12-like	ENST00000454660	NA	NA	"PREDICTED: Homo sapiens 60S ribosomal protein L12-like (LOC648771), miscRNA [XR_133285]"	chr2:204055801-204055860	hs|2q33.2	Agilent_HUMAN_G3V2	XR_133285	XR_133285	chr2	204055801	204055860	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16831_PI429285431	1.9731221	A	1.5097837	A	1.37872851099696	0	lncRNA	18537-1_{1..417}	lnc-GOLGA8J-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GOLGA8J-2:2	chr15	 30117587	 30118003	+	lnc-GOLGA8J-2	lnc-GOLGA8J-2:2	XLOC_011197	linc-ARHGAP11B-3	TJP1	NA	chr15:30107587-30114706	inter
CUST_44831_PI429285431	2.2540886	A	3.6503284	P	0.379918060127995	0	lncRNA	49360-1_{1..493}	"gi|346223453|ref|NR_045127.1| Homo sapiens uncharacterized LOC100652739 (LOC100652739), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|346223453|ref|NR_045127.1| Homo sapiens uncharacterized LOC100652739 (LOC100652739), transcript variant 2, non-coding RNA"	Chr6	150211239	150211731	+	100652739	NR_045127.1	NA	NA	NA	"hg19_refFlat_ULBP1:range=chr6:150285186-1502912615'pad=0,hg19_refFlat_ULBP1:range=chr6:150285186-1502912615'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ULBP2:range=chr6:150263209-1502685655'pad=0,hg19_refFlat_ULBP2:range=chr6:150263209-1502685655'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RAET1G:range=chr6:150238048-1502441465'pad=0,hg19_refFlat_RAET1G:range=chr6:150238048-1502441465'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_RAET1E:range=chr6:150209634-1502120375'pad=0,hg19_refFlat_RAET1E:range=chr6:150209634-1502120375'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_RAET1E:range=chr6:150210476-1502120375'pad=0,hg19_refFlat_RAET1E:range=chr6:150210476-1502120375'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_RAET1L:range=chr6:150341266-1503466075'pad=0,hg19_refFlat_RAET1L:range=chr6:150341266-1503466075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_RAET1E:range=chr6:150205624-1502120375'pad=0,hg19_refFlat_RAET1E:range=chr6:150205624-1502120375'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30"	NA	inter
LNCA_21_P0002460	0.908268	A	0.92759836	A	0.986690579611386	0	lncRNA	TCONS_00004307	NA	NA	NA	NA	XLOC_002160	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002160), lincRNA [TCONS_00004307]"	chr2:73384024-73383965	hs|2p13.2	Agilent_HUMAN_G3V2	TCONS_00004307	TCONS_00004307	chr2	 73383965	 73384024	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7738_PI429285431	10.085271	P	9.651224	P	1.35101809717481	0	lncRNA	9367-1_{1..718}	lnc-FAM82A2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM82A2-2:3	chr15	 40987210	 40987927	-	lnc-FAM82A2-2	lnc-FAM82A2-2:3	ENSG00000245849	CTD-2339L15.1	RAD51	NA	chr15:40987327-40997294	inter
CUST_17732_PI429285431	0.8941948	A	0.9268334	A	0.977630635528651	0	lncRNA	19464-1_{1..361}	lnc-CALML5-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CALML5-4:1	chr10	  5606320	  5606680	-	lnc-CALML5-4	lnc-CALML5-4:1	XLOC_008709	linc-CALML5-2	NA	NA	NA	inter
CUST_21101_PI429285431	3.7114415	P	4.1190543	P	0.753869756162376	0	lncRNA	22726-1_{1..542}	lnc-DUOX2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DUOX2-2:1	chr15	 45350744	 45351285	-	lnc-DUOX2-2	lnc-DUOX2-2:1	ENSG00000259418.1	RP11-109D20.1	SORD	NA	chr15:45340744-45360905	inner
CUST_5943_PI429285431	3.485197	P	4.256015	P	0.586085073439173	0	lncRNA	5872-1_{1..2616}	"transcript_id ""ENST00000585484.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585484.1"" | genecode_v17"	chr17	 66624295	 66626910	+	ENSG00000267659.1	ENST00000585484.1	RP11-118B18.1	RP11-118B18.1-001	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70"	NA	inter
CUST_11135_PI429285431	0.90877616	A	0.9233753	A	0.989931675650456	0	lncRNA	12692-2_{3001..5339}	lnc-GRIP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRIP1-1:2	chr12	 67304276	 67306614	-	lnc-GRIP1-1	lnc-GRIP1-1:2	XLOC_010109	linc-GRIP1-1	NA	"hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90"	NA	inter
CUST_73_PI429285431	2.0758123	A	2.3662803	A	0.817636779982604	0	lncRNA	68-1_{1..2656}	"transcript_id ""ENST00000341011.7"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000341011.7"" | genecode_v17"	chr17	 41447213	 41449868	-	ENSG00000188825.8	ENST00000341011.7	CTD-3014M21.4	CTD-3014M21.4-004	NA	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.91;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.81;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20"	NA	inter
LNCA_21_P0012586	0.8863397	A	0.8977409	A	0.992128434679296	0	lncRNA	TCONS_l2_00020545	NA	NA	NA	NA	XLOC_l2_010687	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010687), lincRNA [TCONS_l2_00020545]"	chr4:61655758-61655817	hs|4q13.1	Agilent_HUMAN_G3V2	TCONS_l2_00020545	TCONS_l2_00020545	chr4	 61655758	 61655817	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19983_PI429285431	1.2520257	A	1.4408884	A	0.877297036336342	0	lncRNA	21636-1_{1..374}	lnc-C13orf16-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C13orf16-2:1	chr13	112294092	112294465	+	lnc-C13orf16-2	lnc-C13orf16-2:1	ENSG00000215881.3	RP11-65D24.1	NA	NA	NA	inter
LNCA_21_P0006368	3.0077164	P	3.196676	P	0.877238113815932	0	lncRNA	TCONS_00016676	NA	NA	NA	NA	XLOC_007537	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007537), lincRNA [TCONS_00016676]"	chr9:120546635-120546694	hs|9q33.1	Agilent_HUMAN_G3V2	TCONS_00016676	TCONS_00016676	chr9	120546635	120546694	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25566_PI429285431	3.3468742	A	3.8058574	P	0.727498813399076	0	lncRNA	27095-1_{1..88}	lnc-JMJD7-PLA2G4B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JMJD7-PLA2G4B-1:1	chr15	 42189527	 42189614	+	lnc-JMJD7-PLA2G4B-1	lnc-JMJD7-PLA2G4B-1:1	ENSG00000174171.3	RP11-23P13.6	EHD4	NA	chr15:42191638-42199585	inter
CUST_45390_PI429285431	5.94815	P	6.5506225	P	0.65862423317178	0	lncRNA	49820-1_{1..1270}	"gi|190570166|ref|NR_023389.1| Homo sapiens long intergenic non-protein coding RNA 476 (LINC00476), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|190570166|ref|NR_023389.1| Homo sapiens long intergenic non-protein coding RNA 476 (LINC00476), transcript variant 2, non-coding RNA"	Chr9	 98632566	 98633835	-	100128782	NR_023389.1	NA	NA	NA	NA	NA	inter
CUST_10441_PI429285431	1.4266274	A	1.2360537	A	1.14121744050705	0	lncRNA	11968-1_{1..3000}	lnc-SLC15A3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC15A3-3:1	chr11	 60810538	 60813537	-	lnc-SLC15A3-3	lnc-SLC15A3-3:1	XLOC_009447	linc-SLC15A3	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90"	NA	inter
CUST_25839_PI429285431	5.5614314	P	5.548939	P	1.00869667004448	0	lncRNA	27360-1_{1..378}	lnc-ICMT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ICMT-1:1	chr1	  6265814	  6266191	-	lnc-ICMT-1	lnc-ICMT-1:1	ENSG00000226944.1	RP1-120G22.11	RPL22	NA	chr1:6255814-6259679	inter
CUST_10201_PI429285431	1.1215227	A	0.9009977	A	1.16515751279347	0	lncRNA	11727-1_{1..445}	lnc-ACTR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ACTR2-1:1	chr2	 65682794	 65683238	+	lnc-ACTR2-1	lnc-ACTR2-1:1	XLOC_001501	linc-MEIS1-7	NA	NA	NA	inter
CUST_16534_PI429285431	3.5847511	P	3.580305	A	1.00308655531228	0	lncRNA	18233-1_{1..518}	lnc-AC006455.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC006455.1-5:1	chr7	 63152673	 63153190	+	lnc-AC006455.1-5	lnc-AC006455.1-5:1	XLOC_006117	linc-ZNF727-6	LOC402269	NA	chr7:63142673-63161735	inter
CUST_34542_PI429285431	7.067258	P	3.2822452	P	13.7848608580489	0	lncRNA	36003-1_{1..2003}	n341422|AK026784|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3892|NULL|-0.8946550|-0.4216153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341422|AK026784|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3892|NULL|-0.8946550|-0.4216153	chr13	102371306	102373308	+	NA	NA	NA	NA	FGF14	NA	chr13:102373205-102383206	inner
CUST_46927_PI429285431	2.2210846	A	1.838072	A	1.30406212443683	0	lncRNA	51038-4_{9001..9424}	"gi|254939594|ref|NR_003587.2| Homo sapiens myosin XVB pseudogene (MYO15B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254939594|ref|NR_003587.2| Homo sapiens myosin XVB pseudogene (MYO15B), non-coding RNA"	NA	NA	NA	NA	NA	NR_003587.2	NA	NA	NA	NA	NA	Unknown
CUST_11336_PI429285431	2.9976666	A	2.4660792	A	1.44551882784241	0	lncRNA	12899-1_{1..470}	lnc-GPCPD1-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPCPD1-1:11	chr20	  5483309	  5483778	-	lnc-GPCPD1-1	lnc-GPCPD1-1:11	XLOC_013643	linc-PROKR2-4	NA	NA	NA	inter
LNCA_21_P0005713	0.8756869	A	1.2577498	A	0.767339592064744	0	lncRNA	TCONS_00014742	NA	NA	NA	NA	XLOC_006825	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006825), lincRNA [TCONS_00014742]"	chr8:65929548-65929607	hs|8q12.3	Agilent_HUMAN_G3V2	TCONS_00014742	TCONS_00014742	chr8	 65929548	 65929607	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17560_PI429285431	1.022706	A	0.9216075	A	1.07258984538686	0	lncRNA	19288-1_{1..397}	lnc-CBX2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBX2-2:1	chr17	 77793307	 77793703	+	lnc-CBX2-2	lnc-CBX2-2:1	XLOC_012333	linc-CCDC40-3	NA	NA	NA	inter
CUST_9519_PI429285431	6.2331786	P	6.8645544	P	0.645560494609369	0	lncRNA	11027-1_{1..872}	lnc-NOP56-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOP56-1:1	chr20	  2645904	  2646775	+	lnc-NOP56-1	lnc-NOP56-1:1	XLOC_013439	linc-EBF4	NOP56	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10chr20:2635904-2639039"	NA	inter
CUST_16080_PI429285431	0.9047526	A	0.9104381	A	0.996066866814519	0	lncRNA	17783-1_{1..477}	lnc-BRMS1L-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BRMS1L-3:4	chr14	 36704526	 36705002	+	lnc-BRMS1L-3	lnc-BRMS1L-3:4	XLOC_010798	linc-PAX9-4	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20"	NA	inter
LNCA_21_P0005784	1.6700356	A	0.8718028	A	1.73896970580278	0	lncRNA	TCONS_00014901	NA	NA	NA	NA	XLOC_006972	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006972), lincRNA [TCONS_00014901]"	chr8:1237123-1237064	hs|8p23.3	Agilent_HUMAN_G3V2	TCONS_00014901	TCONS_00014901	chr8	  1237064	  1237123	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48304_PI429285431	0.9281926	A	0.8921186	A	1.02531982815839	0	lncRNA	52162-1_{1..1769}	hg19_lincRNAsTranscripts_TCONS_l2_00000131 range=chr1:16974462-16977291 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000131 range=chr1:16974462-16977291 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 16974462	 16976230	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16853_PI429285431	6.0709443	P	7.3607254	P	0.409013084092624	0	lncRNA	18560-2_{3001..5121}	lnc-ADARB1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADARB1-3:1	chr21	 46718936	 46721056	+	lnc-ADARB1-3	lnc-ADARB1-3:1	XLOC_013981	linc-COL18A1-4	POFUT2	NA	chr21:46705936-46707811	inter
CUST_36764_PI429285431	0.8970026	A	0.89590585	A	1.00076049820251	0	lncRNA	37937-1_{1..2049}	n345244|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_793|NULL|-1.1566600|-0.3915182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345244|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_793|NULL|-1.1566600|-0.3915182	chr14	 53703648	 53705696	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19342_PI429285431	0.9091115	A	0.9170279	A	0.994527797009478	0	lncRNA	21008-1_{1..580}	lnc-IRS2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-IRS2-2:1	chr13	109853803	109854382	-	lnc-IRS2-2	lnc-IRS2-2:1	ENSG00000236242.1	MYO16-AS1	MYO16	NA	chr13:109843803-109860355	inner
CUST_32422_PI429285431	1.6603701	A	1.6580125	A	1.00163549976617	0	lncRNA	34098-2_{3001..4626}	n339017|AL157450|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1446|NULL|1.2708800|-0.2718180	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339017|AL157450|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1446|NULL|1.2708800|-0.2718180	chr2	173590913	173592538	-	NA	NA	NA	NA	RAPGEF4	NA	chr2:173600525-173610934	inner
LNCA_21_P0003521	5.691016	P	5.413501	P	1.21210526939653	0	lncRNA	ENST00000512989	NA	NA	NA	NA	XLOC_004118	NA	ENST00000512989	THC2725505	NA	"BROAD Institute lincRNA (XLOC_004118), lincRNA [TCONS_00007870]"	chr4:149862178-149862119	hs|4q31.23	Agilent_HUMAN_G3V2	ENST00000512989	ENST00000512989	chr4	149862119	149862178	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47180_PI429285431	2.0346	A	1.1953723	A	1.78909215300523	0	lncRNA	51257-2_{3001..4726}	"gi|305682569|ref|NR_036599.1| Homo sapiens zinc finger protein 28 (ZNF28), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|305682569|ref|NR_036599.1| Homo sapiens zinc finger protein 28 (ZNF28), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_036599.1	NA	NA	NA	NA	NA	Unknown
CUST_52042_PI429285431	0.9184408	A	0.93833715	A	0.986303562636697	0	lncRNA	55572-1_{1..889}	hg19_lincRNAsTranscripts_TCONS_l2_00017191 range=chr21:29948898-29998990 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017191 range=chr21:29948898-29998990 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 29948898	 29949786	-	NA	NA	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.21;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80"	NA	inter
LNCA_21_P0005976	7.983074	P	8.452754	P	0.722124752394437	0	lncRNA	TCONS_00015499	NA	NA	NA	NA	XLOC_007222	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007222), lincRNA [TCONS_00015499]"	chr8:131455734-131440038	hs|8q24.21	Agilent_HUMAN_G3V2	TCONS_00015499	TCONS_00015499	chr8	131440038	131455734	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013353	5.42867	P	7.453883	M	0.245668876319925	0	lncRNA	TCONS_l2_00026958	NA	NA	NA	NA	XLOC_l2_014048	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014048), lincRNA [TCONS_l2_00026958]"	chr7:149246306-149244983	hs|7q36.1	Agilent_HUMAN_G3V2	TCONS_l2_00026958	TCONS_l2_00026958	chr7	149244983	149246306	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32103_PI429285431	5.435299	P	3.9240122	P	2.85064186421521	0	lncRNA	33807-1_{1..1736}	n338666|CR625002|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1080|NULL|-1.0397500|-0.4356031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338666|CR625002|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1080|NULL|-1.0397500|-0.4356031	chr13	 41701736	 41703471	-	NA	NA	NA	NA	KBTBD6	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-21.70chr13:41701709-41706936"	NA	inner
LNCA_21_P0004013	1.7919399	A	0.9565149	A	1.78438261832869	0	lncRNA	ENST00000427584	NA	NA	NA	NA	XLOC_004423	NA	ENST00000427584	NA	NA	"BROAD Institute lincRNA (XLOC_004423), lincRNA [TCONS_00009419]"	chr5:72511069-72511128	hs|5q13.2	Agilent_HUMAN_G3V2	ENST00000427584	ENST00000427584	chr5	 72511069	 72511128	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004666	0.9157131	A	0.9559999	A	0.97246160806805	0	lncRNA	ENST00000420766	XR_108615	XR_108615	NA	Hs.566513	XLOC_005371	NA	ENST00000420766	THC2640662	NA	"PREDICTED: Homo sapiens hypothetical LOC100506908 (LOC100506908), miscRNA [XR_108615]"	chr6:84716951-84717010	hs|6q14.2	Agilent_HUMAN_G3V2	ENST00000420766	ENST00000420766	chr6	 84716951	 84717010	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012480	3.2692132	P	3.8995605	P	0.646020879981834	0	lncRNA	XR_108533	XR_108533	XR_108533	NA	NA	LOC100505902	uncharacterized LOC100505902	NA	THC2668991	NA	"PREDICTED: Homo sapiens hypothetical LOC100505902 (LOC100505902), miscRNA [XR_108533]"	chr3:193727830-193727771	hs|3q29	Agilent_HUMAN_G3V2	XR_108533	XR_108533	chr3	193727771	193727830	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6029_PI429285431	1.5024437	A	1.2009593	A	1.23241179918032	0	lncRNA	5955-1_{1..548}	"transcript_id ""ENST00000580756.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000580756.1"" | genecode_v17"	chr18	   316737	   317284	+	ENSG00000264514.1	ENST00000580756.1	RP11-720L2.4	RP11-720L2.4-001	COLEC12	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70chr18:319355-329165"	NA	inter
LNCA_21_P0001423	2.4878206	A	0.9264438	A	2.95135364173408	0	lncRNA	TCONS_00001279	NA	NA	NA	NA	XLOC_000566	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000566), lincRNA [TCONS_00001279]"	chr1:219467714-219467773	hs|1q41	Agilent_HUMAN_G3V2	TCONS_00001279	TCONS_00001279	chr1	219467714	219467773	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44160_PI429285431	4.264918	P	2.9476123	A	2.49200281836722	0	lncRNA	48820-2_{3001..3349}	"gi|310119204|ref|XR_110002.1| PREDICTED: Homo sapiens uncharacterized LOC100506651 (LOC100506651), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119204|ref|XR_110002.1| PREDICTED: Homo sapiens uncharacterized LOC100506651 (LOC100506651), misc_RNA"	NA	NA	NA	NA	NA	XR_110002.1	NA	NA	NA	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00"	NA	Unknown
LNCA_21_P0004919	3.4843583	P	4.197458	P	0.61000809798775	0	lncRNA	TCONS_00011916	NA	NA	NA	NA	XLOC_005424	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005424), lincRNA [TCONS_00011916]"	chr6:110871521-110871580	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00011916	TCONS_00011916	chr6	110871521	110871580	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31608_PI429285431	5.9304037	P	5.938497	P	0.994405857738492	0	lncRNA	33364-1_{1..2398}	n338121|AF188530|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|509|NULL|16.6683000|-0.1357930	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338121|AF188530|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|509|NULL|16.6683000|-0.1357930	chr22	 41697678	 41700075	+	NA	NA	NA	NA	ZC3H7B	NA	chr22:41697567-41756151	inner
LNCA_21_P0009742	2.3914208	A	1.8118163	A	1.49443950726131	0	lncRNA	TCONS_00027203	NA	NA	NA	NA	XLOC_013243	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013243), lincRNA [TCONS_00027203]"	chr19:15716750-15716691	hs|19p13.12	Agilent_HUMAN_G3V2	TCONS_00027203	TCONS_00027203	chr19	 15716691	 15716750	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47061_PI429285431	1.5374701	A	2.2726324	A	0.600750437866766	0	lncRNA	51148-1_{1..2904}	"gi|349732182|ref|NR_045214.1| Homo sapiens uncharacterized LOC100507373 (LOC100507373), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|349732182|ref|NR_045214.1| Homo sapiens uncharacterized LOC100507373 (LOC100507373), non-coding RNA"	Chr19	 14247964	 14250867	+	100507373	NR_045214.1	NA	NA	NA	"hg19_refFlat_LPHN1:range=chr19:14261685-142944145'pad=0,hg19_refFlat_LPHN1:range=chr19:14261685-142944145'pad=0 3'pad=0 strand=- repeatMasking=none,-96.10"	NA	inter
LNCA_21_P0011818	1.6071248	A	2.1424866	A	0.689985619957368	0	lncRNA	TCONS_l2_00013792	NA	NA	NA	NA	XLOC_l2_007427	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007427), lincRNA [TCONS_l2_00013792]"	chr2:91966126-91966185	hs|2p11.1	Agilent_HUMAN_G3V2	TCONS_l2_00013792	TCONS_l2_00013792	chr2	 91966126	 91966185	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9627_PI429285431	0.90871763	A	0.90990376	A	0.999178175217842	0	lncRNA	11144-1_{1..500}	lnc-CELF4-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CELF4-6:1	chr18	 36738949	 36739448	-	lnc-CELF4-6	lnc-CELF4-6:1	XLOC_012824	linc-CELF4-7	NA	NA	NA	inter
LNCA_21_P0001290	2.0214317	A	1.6897937	A	1.25844136668466	0	lncRNA	ENST00000429328	NA	NA	NA	NA	XLOC_000175	NA	ENST00000429328	THC2705847	NA	"BROAD Institute lincRNA (XLOC_000175), lincRNA [TCONS_00000929]"	chr1:47645923-47645982	hs|1p33	Agilent_HUMAN_G3V2	ENST00000429328	ENST00000429328	chr1	 47645923	 47645982	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013485	3.2909236	P	1.6888266	A	3.03584261480403	0	lncRNA	TCONS_l2_00027780	NA	NA	NA	NA	XLOC_l2_014217	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014217), lincRNA [TCONS_l2_00027780]"	chr8:58153389-58153448	hs|8q12.1	Agilent_HUMAN_G3V2	TCONS_l2_00027780	TCONS_l2_00027780	chr8	 58153389	 58153448	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45208_PI429285431	1.1513894	A	0.87785035	A	1.20876940481805	0	lncRNA	49671-1_{1..762}	"gi|310120221|ref|XR_108915.1| PREDICTED: Homo sapiens uncharacterized LOC100505613 (LOC100505613), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120221|ref|XR_108915.1| PREDICTED: Homo sapiens uncharacterized LOC100505613 (LOC100505613), misc_RNA"	NA	NA	NA	NA	NA	XR_108915.1	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50"	NA	Unknown
CUST_17063_PI429285431	0.89678496	A	0.9924457	A	0.935843542223003	0	lncRNA	18772-1_{1..640}	lnc-AL591845.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL591845.1-1:1	chr1	 36916578	 36917217	+	lnc-AL591845.1-1	lnc-AL591845.1-1:1	XLOC_000141	linc-ZC3H12A-4	OSCP1	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30chr1:36906578-36916086"	NA	inter
CUST_256_PI429201921	0.8805059	A	0.87662077	A	1.00269659619811	0	lncRNA	190-3_{6001..6424}	TC07002344.hg.1	TCONS_l2_00025913-XLOC_l2_013430 // Broad TUCP // linc-ZNF727-12 chr7:+:62910802-62917227 // chr7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr7:+:62910802-62917227	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00025913-XLOC_l2_013430	linc-ZNF727-12	chr7	 62910802	 62917227	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31453_PI429285431	1.2547872	A	1.5844411	A	0.795727354450441	0	lncRNA	33220-1_{1..1651}	n337923|AK130284|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|307|NULL|-1.0781400|-0.3100374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337923|AK130284|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|307|NULL|-1.0781400|-0.3100374	chr1	 52058446	 52060096	+	NA	NA	NA	NA	OSBPL9	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.96;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50chr1:52048446-52070099"	NA	inter
CUST_43176_PI429285431	0.8922074	A	0.89366627	A	0.998989299474882	0	lncRNA	47990-1_{1..435}	ENST00000597110 havana:sense_intronic chromosome:GRCh37:19:35821746:35822823:1 gene:ENSG00000269553 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000597110 havana:sense_intronic chromosome:GRCh37:19:35821746:35822823:1 gene:ENSG00000269553 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 35821746	 35822180	+	ENSG00000269553	ENST00000597110	NA	NA	CD22	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30chr19:35820072-35832823"	NA	inner
CUST_24034_PI429285431	1.0723926	A	0.9057284	A	1.12246012916688	0	lncRNA	25586-1_{1..282}	lnc-CRNKL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CRNKL1-2:1	chr20	 20195705	 20195986	-	lnc-CRNKL1-2	lnc-CRNKL1-2:1	ENSG00000225417.1	RP5-1178H5.2	C20orf26	NA	chr20:20185705-20205906	inner
LNCA_21_P0007261	0.8763012	A	1.5223229	A	0.639040069539789	0	lncRNA	TCONS_00019440	NA	NA	NA	NA	XLOC_009250	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009250), lincRNA [TCONS_00019440]"	chr11:91605511-91605570	hs|11q14.3	Agilent_HUMAN_G3V2	TCONS_00019440	TCONS_00019440	chr11	 91605511	 91605570	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_472_PI429285431	0.91294754	A	0.9147997	A	0.998717004261735	0	lncRNA	463-1_{1..701}	"transcript_id ""ENST00000426519.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426519.1"" | genecode_v17"	chr1	166445009	166445709	-	ENSG00000234142.1	ENST00000426519.1	RP11-276E17.2	RP11-276E17.2-001	NA	NA	NA	inter
CUST_48783_PI429285431	7.6393414	P	7.6126375	P	1.01868209994906	0	lncRNA	52621-1_{1..423}	hg19_lincRNAsTranscripts_TCONS_l2_00016074 range=chr2:208973041-208977232 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016074 range=chr2:208973041-208977232 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	208973041	208973463	-	NA	NA	NA	NA	CRYGD	NA	chr2:208986331-208987232	inter
LNCA_21_P0014746	4.1962237	P	4.0467916	P	1.10913278899828	0	lncRNA	ENST00000436772	XR_132480	XR_132480	NA	NA	LOC100652965	NA	ENST00000436772	THC2524150	NA	"PREDICTED: Homo sapiens hypothetical LOC100652965 (LOC100652965), miscRNA [XR_132480]"	chr1:155170298-155170357	hs|1q22	Agilent_HUMAN_G3V2	ENST00000436772	ENST00000436772	chr1	155170298	155170357	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46757_PI429285431	13.1403885	P	12.870749	P	1.20550655860509	0	lncRNA	50907-1_{1..1334}	"gi|224548956|ref|NR_027161.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224548956|ref|NR_027161.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 5, non-coding RNA"	Chr17	 16342301	 16343634	+	125144	NR_027161.1	NA	NA	NA	NA	NA	inter
CUST_33494_PI429285431	3.7773638	P	4.2079453	P	0.741962665790934	0	lncRNA	35066-1_{1..1186}	n340233|BC043588|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2694|NULL|-0.9071160|-0.3643399	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340233|BC043588|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2694|NULL|-0.9071160|-0.3643399	chr4	140539289	140540474	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36794_PI429285431	9.475817	P	9.619847	P	0.904987643998225	0	lncRNA	37966-1_{1..632}	n345273|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_822|NULL|-1.3445200|-0.1886366	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345273|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_822|NULL|-1.3445200|-0.1886366	chr14	 73048647	 73049278	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3348802	5.218453	P	5.740809	P	0.696233916178632	0	lncRNA	ENST00000420509	XR_112431	XR_112431	NA	Hs.729467	NA	NA	ENST00000420509	THC2625845	NA	"PREDICTED: Homo sapiens hypothetical LOC729570, transcript variant 2 (LOC729570), miscRNA [XR_112431]"	chr2:206951157-206951216	hs|2q33.3	Agilent_HUMAN_G3V2	ENST00000420509	ENST00000420509	chr2	206951157	206951216	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23805_PI429285431	4.67019	P	2.9365904	A	3.32556530088246	0	lncRNA	25370-1_{1..601}	lnc-CETP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CETP-1:1	chr16	 56974778	 56975378	+	lnc-CETP-1	lnc-CETP-1:1	ENSG00000261270.1	RP11-325K4.3	HERPUD1	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-27.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-23.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-20.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50chr16:56965748-56977793"	NA	inner
LNCA_21_P0007690	0.8692616	A	0.868154	A	1.00076802459716	0	lncRNA	TCONS_00020727	NA	NA	NA	NA	XLOC_010026	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010026), lincRNA [TCONS_00020727]"	chr12:20262709-20258718	hs|12p12.2	Agilent_HUMAN_G3V2	TCONS_00020727	TCONS_00020727	chr12	 20258718	 20262709	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014234	0.9137964	A	0.9313822	A	0.987884443902047	0	lncRNA	XR_133523	XR_133523	XR_133523	NA	NA	LOC100506897	NA	ENST00000431813	THC2645797	NA	"PREDICTED: Homo sapiens hypothetical LOC100506897 (LOC100506897), miscRNA [XR_133523]"	chr9:90169282-90169341	hs|9q21.33	Agilent_HUMAN_G3V2	XR_133523	XR_133523	chr9	 90169282	 90169341	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008085	0.91549456	A	0.95506775	A	0.972942742310153	0	lncRNA	TCONS_00021838	NA	NA	NA	NA	XLOC_010439	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010439), lincRNA [TCONS_00021838]"	chr13:78039927-78039986	hs|13q22.3	Agilent_HUMAN_G3V2	TCONS_00021838	TCONS_00021838	chr13	 78039927	 78039986	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45009_PI429285431	5.7509165	P	5.285627	P	1.38059436410121	0	lncRNA	49512-1_{1..3000}	"gi|237649020|ref|NR_027662.1| Homo sapiens solute carrier family 25 (aspartate/glutamate carrier), member 13 (SLC25A13), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237649020|ref|NR_027662.1| Homo sapiens solute carrier family 25 (aspartate/glutamate carrier), member 13 (SLC25A13), transcript variant 3, non-coding RNA"	Chr7	 95749532	 95752531	-	10165	NR_027662.1	NA	NA	NA	NA	NA	inter
CUST_32514_PI429285431	0.8927863	A	1.2480764	A	0.781712439025284	0	lncRNA	34181-1_{1..2116}	n339119|AK055724|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1549|NULL|-1.0563200|-0.3958149	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339119|AK055724|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1549|NULL|-1.0563200|-0.3958149	chr2	210887130	210889245	+	NA	NA	NA	NA	C2orf67	"hg19_refFlat_KANSL1L:range=chr2:210887673-2110193065'pad=0,hg19_refFlat_KANSL1L:range=chr2:210887673-2110193065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70chr2:210885435-210899246"	NA	inner
CUST_18297_PI429285431	1.8758966	A	2.0148995	A	0.90814659222985	0	lncRNA	20027-1_{1..482}	lnc-EIF3M-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EIF3M-2:7	chr11	 32460418	 32460899	+	lnc-EIF3M-2	lnc-EIF3M-2:7	ENSG00000183242	WT1-AS	WT1	NA	chr11:32450418-32457081	inter
CUST_33776_PI429285431	0.92480445	A	0.9831082	A	0.960392638280306	0	lncRNA	35329-1_{1..2759}	n340561|AK123949|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3023|NULL|-0.9539640|-0.3389939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340561|AK123949|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3023|NULL|-0.9539640|-0.3389939	chr5	 95775851	 95778609	+	NA	NA	NA	NA	PCSK1	NA	chr5:95765851-95768985	inter
LNCA_21_P0013147	3.623753	P	3.3276937	P	1.22778614934281	0	lncRNA	ENST00000404689	NA	NA	NA	NA	XLOC_l2_013064	NA	ENST00000404689	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013064), lincRNA [TCONS_l2_00025436]"	chr6:93432780-93432721	hs|6q16.1	Agilent_HUMAN_G3V2	ENST00000404689	ENST00000404689	chr6	 93432721	 93432780	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003602	0.89563	A	0.91092926	A	0.989451392012245	0	lncRNA	TCONS_00008048	NA	NA	NA	NA	XLOC_003513	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003513), lincRNA [TCONS_00008048]"	chr4:38740693-38740752	hs|4p14	Agilent_HUMAN_G3V2	TCONS_00008048	TCONS_00008048	chr4	 38740693	 38740752	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007841	3.7209542	P	3.1776652	P	1.45729100851839	0	lncRNA	ENST00000548779	NA	AK093193	NA	Hs.524596	XLOC_009807	NA	ENST00000548779	THC2619920	NA	"BROAD Institute lincRNA (XLOC_009807), lincRNA [TCONS_00021163]"	chr12:75644750-75644809	hs|12q21.1	Agilent_HUMAN_G3V2	ENST00000548779	ENST00000548779	chr12	 75644750	 75644809	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34177_PI429285431	0.9211369	A	0.9740418	A	0.963993350446163	0	lncRNA	35693-1_{1..2138}	n341025|CR605524|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3491|NULL|-0.5705770|-0.2184717	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341025|CR605524|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3491|NULL|-0.5705770|-0.2184717	chr11	 45547692	 45549829	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002994	0.8887465	A	0.90159154	A	0.99113601555271	0	lncRNA	TCONS_00006123	NA	NA	NA	NA	XLOC_002726	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002726), lincRNA [TCONS_00006123]"	chr3:87138744-87203533	hs|3p12.1	Agilent_HUMAN_G3V2	TCONS_00006123	TCONS_00006123	chr3	 87138744	 87203533	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30919_PI429285431	6.427761	P	8.440373	P	0.247824031923605	0	lncRNA	32707-1_{1..242}	n336970|BC105298|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338249|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338249|-1.0812800|-0.1341716	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336970|BC105298|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338249|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338249|-1.0812800|-0.1341716	chrX	102318133	102318374	-	NA	NA	NA	NA	BEX1	NA	chrX:102308133-102319168	inner
CUST_6985_PI429285431	7.030962	P	6.8258543	P	1.15277240029593	0	lncRNA	6933-1_{1..510}	"transcript_id ""ENST00000424761.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424761.1"" | genecode_v17"	chr22	 36784671	 36785180	+	ENSG00000223695.1	ENST00000424761.1	RP4-633O19__A.1	RP4-633O19__A.1-001	MYH9	NA	chr22:36774671-36784063	inter
CUST_9213_PI429285431	5.62358	P	5.5833154	P	1.02830240695837	0	lncRNA	10723-2_{3001..5818}	lnc-RSL24D1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RSL24D1-1:1	chr15	 55472323	 55475140	-	lnc-RSL24D1-1	lnc-RSL24D1-1:1	ENSG00000248800	XLOC_011482	RSL24D1	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90chr15:55473512-55480373"	NA	inter
CUST_45197_PI429285431	0.8898256	A	0.8894546	A	1.00025719067184	0	lncRNA	49663-1_{1..2531}	"gi|333470752|ref|NR_038236.1| Homo sapiens uncharacterized LOC100507632 (LOC100507632), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|333470752|ref|NR_038236.1| Homo sapiens uncharacterized LOC100507632 (LOC100507632), non-coding RNA"	Chr8	 57430877	 57433407	-	100507632	NR_038236.1	NA	NA	NA	NA	NA	inter
CUST_15283_PI429285431	6.729433	P	6.6830935	P	1.03264151167464	0	lncRNA	16960-1_{1..2707}	lnc-AC092327.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>lnc-AC092327.1-1:4	chr16	 86379098	 86381804	-	lnc-AC092327.1-1	lnc-AC092327.1-1:4	XLOC_012045	linc-COX4NB-6	NA	NA	NA	inter
CUST_46407_PI429285431	2.7466862	A	3.6599412	P	0.530985731880756	0	lncRNA	50621-1_{1..1573}	"gi|300068975|ref|NR_033938.1| Homo sapiens long intergenic non-protein coding RNA 605 (LINC00605), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300068975|ref|NR_033938.1| Homo sapiens long intergenic non-protein coding RNA 605 (LINC00605), non-coding RNA"	Chr14	103653558	103655130	-	100131366	NR_033938.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80"	NA	inter
LNCA_21_P0005002	11.965811	P	12.197834	P	0.851440133654198	0	lncRNA	TCONS_00012087	NA	NA	NA	NA	XLOC_005617	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005617), lincRNA [TCONS_00012087]"	chr6:14448958-14448899	hs|6p23	Agilent_HUMAN_G3V2	TCONS_00012087	TCONS_00012087	chr6	 14448899	 14448958	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44341_PI429285431	7.7230306	P	7.3887362	P	1.26076063934051	0	lncRNA	48967-2_{3001..4927}	"gi|375331937|ref|NR_046336.1| Homo sapiens family with sequence similarity 193, member A (FAM193A), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375331937|ref|NR_046336.1| Homo sapiens family with sequence similarity 193, member A (FAM193A), transcript variant 6, non-coding RNA"	Chr4	  2630159	  2632085	+	8603	NR_046336.1	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-63.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60"	NA	inter
CUST_16044_PI429285431	0.8975226	A	0.99290836	A	0.936021932510658	0	lncRNA	17743-1_{1..456}	lnc-PIEZO2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIEZO2-3:1	chr18	 11378261	 11378716	-	lnc-PIEZO2-3	lnc-PIEZO2-3:1	XLOC_012768	linc-FAM38B-1	NA	NA	NA	inter
CUST_50999_PI429285431	5.2583547	P	5.2167435	P	1.02926266427029	0	lncRNA	54643-2_{3001..5671}	hg19_lincRNAsTranscripts_TCONS_l2_00006748 range=chr13:25114931-25171738 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006748 range=chr13:25114931-25171738 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 25117931	 25120601	+	NA	NA	NA	NA	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60"	NA	inter
LNCA_33_P3383169	0.876873	A	0.870941	A	1.0041202139131	0	lncRNA	XR_108769	XR_108769	XR_108769	   402481	Hs.529590	PP13004	uncharacterized LOC402481	ENST00000381493	NP1212805	NA	"PREDICTED: Homo sapiens hypothetical LOC402481 (PP13004), miscRNA [XR_108769]"	chr7:36125277-36125336	hs|7p14.2	Agilent_HUMAN_G3V2	XR_108769	XR_108769	chr7	 36125277	 36125336	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15946_PI429285431	1.0830857	A	0.8924647	A	1.14125485691752	0	lncRNA	17643-1_{1..805}	lnc-YPEL5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-YPEL5-1:1	chr2	 30152366	 30153170	+	lnc-YPEL5-1	lnc-YPEL5-1:1	XLOC_001410	linc-YPEL5-1	ALK	NA	chr2:30142366-30144477	inter
CUST_42710_PI429285431	8.839475	P	8.8642025	P	0.983006253794798	0	lncRNA	45641-1_{1..133}	ENST00000384170 ncrna:snoRNA chromosome:GRCh37:12:124101255:124101387:1 gene:ENSG00000206897 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384170 ncrna:snoRNA chromosome:GRCh37:12:124101255:124101387:1 gene:ENSG00000206897 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	124101255	124101387	+	ENSG00000206897	ENST00000384170	NA	NA	EIF2B1	NA	chr12:124105570-124111387	inner
CUST_39088_PI429285431	2.094034	A	3.7264092	P	0.322556724756327	0	lncRNA	40064-1_{1..869}	n385632|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004avg.3||-0.9963590|-0.2047397	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n385632|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004avg.3||-0.9963590|-0.2047397	chr9	 97847501	 97848369	+	NA	NA	NA	NA	C9orf3	NA	chr9:97837501-97849500	inner
LNCA_21_P0009998	0.87772197	A	2.1572673	A	0.411925307770084	0	lncRNA	TCONS_00028298	NA	NA	NA	NA	XLOC_013637	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013637), lincRNA [TCONS_00028298]"	chr20:4301271-4301212	hs|20p13	Agilent_HUMAN_G3V2	TCONS_00028298	TCONS_00028298	chr20	  4301212	  4301271	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22691_PI429285431	8.135724	P	8.490641	P	0.781914626333862	0	lncRNA	24274-1_{1..617}	lnc-ATHL1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATHL1-1:4	chr11	   288950	   289566	+	lnc-ATHL1-1	lnc-ATHL1-1:4	ENSG00000255026.1	RP11-326C3.2	ATHL1	NA	chr11:289138-295688	inter
CUST_37941_PI429285431	0.8923248	A	0.9302301	A	0.974068205292858	0	lncRNA	39031-1_{1..619}	n346487|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2037|NULL|-1.3263200|-0.2995139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346487|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2037|NULL|-1.3263200|-0.2995139	chr6	 26674185	 26674803	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20233_PI429285431	2.4685345	A	1.738506	A	1.65867185786131	0	lncRNA	21876-1_{1..410}	lnc-TBC1D8-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBC1D8-2:2	chr2	101593178	101593587	-	lnc-TBC1D8-2	lnc-TBC1D8-2:2	ENSG00000230140.1	AC016738.3	NPAS2	NA	chr2:101583178-101603262	inner
CUST_18672_PI429285431	6.1702223	P	6.0277133	P	1.10382311329648	0	lncRNA	20373-2_{3001..4925}	lnc-C17orf103-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C17orf103-1:1	chr17	 21159472	 21161396	-	lnc-C17orf103-1	lnc-C17orf103-1:1	ENSG00000154035	C17orf103	C17orf103	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90chr17:21146472-21156578"	NA	inner
CUST_30884_PI429285431	1.9393982	A	0.89762306	A	2.05875926142862	0	lncRNA	32672-1_{1..218}	n336894|AY927368|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332577|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332577|-0.7819340|-0.2951554	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336894|AY927368|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332577|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332577|-0.7819340|-0.2951554	chr1	 84630579	 84630796	+	NA	NA	NA	NA	PRKACB	NA	chr1:84620579-84654903	inner
CUST_940_PI429285431	0.88596815	A	1.0884812	A	0.869035459471263	0	lncRNA	929-1_{1..441}	"transcript_id ""ENST00000418204.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418204.1"" | genecode_v17"	chr2	 75158555	 75158995	+	ENSG00000204792.2	ENST00000418204.1	AC104135.3	AC104135.3-002	NA	NA	NA	inter
CUST_43206_PI429285431	2.234816	A	2.8084548	A	0.671919916873406	0	lncRNA	48020-1_{1..151}	ENST00000533203 havana:sense_intronic chromosome:GRCh37:11:36408071:36409800:1 gene:ENSG00000255186 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000533203 havana:sense_intronic chromosome:GRCh37:11:36408071:36409800:1 gene:ENSG00000255186 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr11	 36408071	 36408221	+	ENSG00000255186	ENST00000533203	NA	NA	PRR5L	NA	chr11:36398071-36419800	inner
LNCA_21_P0009500	0.9136201	A	0.93082035	A	0.988148484281106	0	lncRNA	TCONS_00026366	NA	NA	NA	NA	XLOC_012716	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012716), lincRNA [TCONS_00026366]"	chr18:71625047-71625106	hs|18q22.3	Agilent_HUMAN_G3V2	TCONS_00026366	TCONS_00026366	chr18	 71625047	 71625106	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001901	2.28769	A	0.9332209	A	2.55703002322121	0	lncRNA	ENST00000438897	NA	NA	NA	NA	XLOC_001624	NA	ENST00000438897	NA	NA	"BROAD Institute lincRNA (XLOC_001624), lincRNA [TCONS_00002976]"	chr2:112037398-112037457	hs|2q13	Agilent_HUMAN_G3V2	ENST00000438897	ENST00000438897	chr2	112037398	112037457	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15347_PI429285431	6.2369184	P	6.611704	P	0.771220015777346	0	lncRNA	17028-1_{1..2385}	lnc-PTRH2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PTRH2-1:3	chr17	 57603841	 57606225	-	lnc-PTRH2-1	lnc-PTRH2-1:3	XLOC_012537	linc-SKA2	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60"	NA	inter
CUST_3823_PI429285431	2.3006802	A	2.0152688	A	1.21875775600312	0	lncRNA	3791-1_{1..622}	"transcript_id ""ENST00000596068.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000596068.1"" | genecode_v17"	chr10	127371798	127372419	+	ENSG00000228021.2	ENST00000596068.1	RP11-383C5.3	RP11-383C5.3-003	C10orf122	NA	chr10:127361798-127371713	inter
CUST_42816_PI429285431	0.9038386	A	0.90868425	A	0.996646885650902	0	lncRNA	45822-1_{1..128}	ENST00000362326 ncrna:snoRNA chromosome:GRCh37:13:34674848:34674975:-1 gene:ENSG00000199196 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362326 ncrna:snoRNA chromosome:GRCh37:13:34674848:34674975:-1 gene:ENSG00000199196 gene_biotype:snoRNA transcript_biotype:snoRNA	chr13	 34674848	 34674975	-	ENSG00000199196	ENST00000362326	NA	NA	NA	NA	NA	inter
CUST_46590_PI429285431	2.7624538	A	3.2346914	P	0.720845708597971	0	lncRNA	50773-1_{1..3000}	"gi|371872695|ref|NR_045815.1| Homo sapiens activating transcription factor 7 interacting protein 2 (ATF7IP2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371872695|ref|NR_045815.1| Homo sapiens activating transcription factor 7 interacting protein 2 (ATF7IP2), transcript variant 3, non-coding RNA"	Chr16	 10522725	 10525724	+	80063	NR_045815.1	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60"	NA	inter
LNCA_21_P0012729	3.2909603	P	3.0703602	A	1.16521816705808	0	lncRNA	THC2524841	NA	NA	NA	NA	XLOC_l2_010723	NA	NA	THC2524841	NA	"BROAD Institute lincRNA (XLOC_l2_010723), lincRNA [TCONS_l2_00021620]"	chr4:079584239-079584298	hs|4q21.21	Agilent_HUMAN_G3V2	THC2524841	THC2524841	chr4	 79584239	 79584298	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20914_PI429285431	1.1544154	A	1.2252469	A	0.952089101536162	0	lncRNA	22545-1_{1..983}	lnc-ART5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ART5-1:1	chr11	  3602157	  3603139	-	lnc-ART5-1	lnc-ART5-1:1	ENSG00000255367.1	RP13-726E6.2	NA	NA	NA	inter
CUST_44155_PI429285431	3.7242346	A	1.03672	A	6.44202652044593	0	lncRNA	48816-1_{1..1854}	"gi|386781786|ref|NR_048543.1| Homo sapiens LARS2 antisense RNA 1 (LARS2-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|386781786|ref|NR_048543.1| Homo sapiens LARS2 antisense RNA 1 (LARS2-AS1), non-coding RNA"	Chr3	 45524187	 45526040	-	100885795	NR_048543.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00"	NA	inter
CUST_2658_PI429285431	1.0669451	A	1.2333993	A	0.89102993105399	0	lncRNA	2644-1_{1..263}	"transcript_id ""ENST00000603042.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603042.1"" | genecode_v17"	chr6	146058047	146058309	-	ENSG00000270828.1	ENST00000603042.1	RP3-466P17.2	RP3-466P17.2-001	EPM2A	NA	chr6:146048047-146056991	inter
CUST_30042_PI429285431	11.095169	P	11.384088	P	0.818515135768892	0	lncRNA	31811-1_{1..227}	n334538|U46546|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219999|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219999|0.2665300|-0.0374844	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334538|U46546|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000219999|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000219999|0.2665300|-0.0374844	chr19	 46273778	 46274004	-	NA	NA	NA	NA	SIX5	NA	chr19:46268043-46272497	inner
CUST_22467_PI429285431	0.89752316	A	0.8947065	A	1.00195426703317	0	lncRNA	24054-1_{1..2648}	lnc-UGT2B28-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-UGT2B28-1:2	chr4	 70080191	 70082838	+	lnc-UGT2B28-1	lnc-UGT2B28-1:2	ENSG00000250696.1	RP11-704M14.1	UGT2B11	"hg19_refFlat_UGT2B7:range=chr4:69962239-699784545'pad=0,hg19_refFlat_UGT2B7:range=chr4:69962239-699784545'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_UGT2B15:range=chr4_ctg9_hap1:225423-2489235'pad=0,hg19_refFlat_UGT2B15:range=chr4_ctg9_hap1:225423-2489235'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_UGT2B28:range=chr4:70146219-701605275'pad=0,hg19_refFlat_UGT2B28:range=chr4:70146219-701605275'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_UGT2B10:range=chr4_ctg9_hap1:393989-4088485'pad=0,hg19_refFlat_UGT2B10:range=chr4_ctg9_hap1:393989-4088485'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_UGT2B10:range=chr4:69681738-696965975'pad=0,hg19_refFlat_UGT2B10:range=chr4:69681738-696965975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_UGT2B15:range=chr4:69512822-695363365'pad=0,hg19_refFlat_UGT2B15:range=chr4:69512822-695363365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_UGT2B28:range=chr4:70146219-701602535'pad=0,hg19_refFlat_UGT2B28:range=chr4:70146219-701602535'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_UGT2B4:range=chr4:70346352-703615795'pad=0,hg19_refFlat_UGT2B4:range=chr4:70346352-703615795'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_UGT2B10:range=chr4_ctg9_hap1:582825-5879745'pad=0,hg19_refFlat_UGT2B10:range=chr4_ctg9_hap1:582825-5879745'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_UGT2B11:range=chr4:70066158-700804405'pad=0,hg19_refFlat_UGT2B11:range=chr4:70066158-700804405'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_UGT2B17:range=chr4:69403343-694342025'pad=0,hg19_refFlat_UGT2B17:range=chr4:69403343-694342025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_UGT2B17:range=chr4_ctg9_hap1:225423-2489235'pad=0,hg19_refFlat_UGT2B17:range=chr4_ctg9_hap1:225423-2489235'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_UGT2B10:range=chr4:69870574-698860885'pad=0,hg19_refFlat_UGT2B10:range=chr4:69870574-698860885'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00chr4:70070191-70080449"	NA	inner
CUST_27166_PI429285431	0.9127441	A	0.9279592	A	0.989509113606686	0	lncRNA	28705-1_{1..647}	n324294|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043210|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043210|-1.1520400|-0.3659096	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324294|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043210|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043210|-1.1520400|-0.3659096	chr6	169300111	169300757	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12580_PI429285431	0.90008795	A	0.90327084	A	0.997796220665708	0	lncRNA	14189-1_{1..546}	lnc-MYCN-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYCN-6:1	chr2	 16710607	 16711152	+	lnc-MYCN-6	lnc-MYCN-6:1	XLOC_001369	linc-VSNL1-4	NA	NA	NA	inter
LNCA_21_P0004447	0.8846195	A	0.89472353	A	0.993020888004649	0	lncRNA	TCONS_00010500	NA	NA	NA	NA	XLOC_005020	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005020), lincRNA [TCONS_00010500]"	chr5:139120624-139120565	hs|5q31.2	Agilent_HUMAN_G3V2	TCONS_00010500	TCONS_00010500	chr5	139120565	139120624	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005379	0.88240755	A	1.2409749	A	0.779938703460646	0	lncRNA	TCONS_00013443	NA	NA	NA	NA	XLOC_006094	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006094), lincRNA [TCONS_00013443]"	chr7:49760455-49760514	hs|7p12.2	Agilent_HUMAN_G3V2	TCONS_00013443	TCONS_00013443	chr7	 49760455	 49760514	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20216_PI429285431	0.8913434	A	0.8905684	A	1.00053733337682	0	lncRNA	21860-1_{1..661}	lnc-MLLT10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MLLT10-1:1	chr10	 21463411	 21464071	+	lnc-MLLT10-1	lnc-MLLT10-1:1	ENSG00000231920.1	RP11-565H13.2	NEBL	NA	chr10:21453411-21463116	inter
CUST_34408_PI429285431	4.3982825	P	4.869838	P	0.72118660192359	0	lncRNA	35890-1_{1..2446}	n341278|BX648200|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3747|NULL|-0.3710460|-0.1448838	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341278|BX648200|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3747|NULL|-0.3710460|-0.1448838	chr7	 97840777	 97843222	+	NA	NA	NA	NA	LMTK2	NA	chr7:97830777-97838945	inner
LNCA_21_P0006862	6.815664	P	6.916257	P	0.932649559936195	0	lncRNA	TCONS_00018175	NA	NA	NA	NA	XLOC_008467	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008467), lincRNA [TCONS_00018175]"	chr10:43917989-43918048	hs|10q11.21	Agilent_HUMAN_G3V2	TCONS_00018175	TCONS_00018175	chr10	 43917989	 43918048	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010451	8.3041	P	8.413571	P	0.926927880734574	0	lncRNA	TCONS_00029727	NA	NA	NA	NA	XLOC_014403	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014403), lincRNA [TCONS_00029727]"	chr22:46409237-46409178	hs|22q13.31	Agilent_HUMAN_G3V2	TCONS_00029727	TCONS_00029727	chr22	 46409178	 46409237	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33163_PI429285431	1.3332158	A	1.7337689	A	0.757567791457591	0	lncRNA	34757-1_{1..825}	n339854|BC029842|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2302|NULL|-0.8066450|-0.1653861	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339854|BC029842|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2302|NULL|-0.8066450|-0.1653861	chr18	 43087166	 43087990	+	NA	NA	NA	NA	SLC14A2	NA	chr18:43077166-43140148	inner
LNCA_21_P0008940	0.87651545	A	0.87690496	A	0.999730048685115	0	lncRNA	TCONS_00024405	NA	NA	NA	NA	XLOC_011722	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011722), lincRNA [TCONS_00024405]"	chr16:51847398-51847457	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00024405	TCONS_00024405	chr16	 51847398	 51847457	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27543_PI429285431	2.5096793	A	2.3329954	A	1.13028289068886	0	lncRNA	29118-1_{1..354}	n324729|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319437|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319437|-1.0700400|-0.2933187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324729|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319437|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319437|-1.0700400|-0.2933187	chr22	 18758908	 18759261	+	NA	NA	NA	NA	NA	"hg19_refFlat_TBC1D29:range=chr17:28886733-288904435'pad=0,hg19_refFlat_TBC1D29:range=chr17:28886733-288904435'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	inter
LNCA_21_P0006192	0.87617624	A	0.8757408	A	1.00030186956175	0	lncRNA	TCONS_00016097	NA	NA	NA	NA	XLOC_007488	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007488), lincRNA [TCONS_00016097]"	chr9:102299155-102304634	hs|9q22.33	Agilent_HUMAN_G3V2	TCONS_00016097	TCONS_00016097	chr9	102299155	102304634	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004957	0.87583065	A	0.87386173	A	1.00136568304366	0	lncRNA	TCONS_00011994	NA	NA	NA	NA	XLOC_005508	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005508), lincRNA [TCONS_00011994]"	chr6:153860993-153861980	hs|6q25.2	Agilent_HUMAN_G3V2	TCONS_00011994	TCONS_00011994	chr6	153860993	153861980	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002585	3.3956242	P	2.4194827	A	1.96719708192203	0	lncRNA	TCONS_00004742	NA	NA	NA	NA	XLOC_001415	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001415), lincRNA [TCONS_00004742]"	chr2:31496364-31496423	hs|2p23.1	Agilent_HUMAN_G3V2	TCONS_00004742	TCONS_00004742	chr2	 31496364	 31496423	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26441_PI429285431	4.9418435	P	5.059	P	0.9220030958657	0	lncRNA	27949-1_{1..388}	lnc-PIGL-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PIGL-1:2	chr17	 16247632	 16248019	+	lnc-PIGL-1	lnc-PIGL-1:2	ENSG00000225436.1	AC005971.3	CENPV	NA	chr17:16245848-16256812	inner
LNCA_21_P0013829	0.8759075	A	0.8725941	A	1.0022993132437	0	lncRNA	TCONS_l2_00030583	NA	NA	NA	NA	XLOC_l2_015804	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015804), lincRNA [TCONS_l2_00030583]"	chrX:118380596-118380537	hs|Xq24	Agilent_HUMAN_G3V2	TCONS_l2_00030583	TCONS_l2_00030583	chrX	118380537	118380596	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1023_PI429285431	1.9913676	A	2.820264	A	0.562959717781217	0	lncRNA	1012-1_{1..533}	"transcript_id ""ENST00000566951.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566951.1"" | genecode_v17"	chr2	111003233	111003765	+	ENSG00000261760.2	ENST00000566951.1	RP11-1223D19.1	RP11-1223D19.1-008	LOC100287119	NA	chr2:111025028-111045083	inter
LNCA_21_P0014128	1.4598455	A	0.9191147	A	1.45470921652055	0	lncRNA	XR_108513	XR_108513	XR_108513	NA	Hs.633891	LOC100505528	uncharacterized LOC100505528	NA	THC2498839	NA	"PREDICTED: Homo sapiens hypothetical LOC100505528 (LOC100505528), miscRNA [XR_108513]"	chr3:172443590-172443649	hs|3q26.31	Agilent_HUMAN_G3V2	XR_108513	XR_108513	chr3	172443590	172443649	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004353	0.87771344	A	0.8743641	A	1.00232428254421	0	lncRNA	XR_108581	XR_108581	XR_108581	NA	NA	LOC100506858	uncharacterized LOC100506858	NA	THC2672052	NA	"PREDICTED: Homo sapiens hypothetical LOC100506858 (LOC100506858), miscRNA [XR_108581]"	chr5:2303925-2303866	hs|5p15.33	Agilent_HUMAN_G3V2	XR_108581	XR_108581	chr5	  2303866	  2303925	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47428_PI429285431	3.645168	P	2.6929572	A	1.93483534786522	0	lncRNA	51464-1_{1..1483}	"gi|40445391|ref|NR_001591.1| Homo sapiens transmembrane phosphatase with tensin homology pseudogene 1 (TPTEP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|40445391|ref|NR_001591.1| Homo sapiens transmembrane phosphatase with tensin homology pseudogene 1 (TPTEP1), non-coding RNA"	NA	NA	NA	NA	NA	NR_001591.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70"	NA	Unknown
CUST_45846_PI429285431	0.895953	A	0.9284167	A	0.977749162284662	0	lncRNA	50178-1_{1..1006}	"gi|310120729|ref|XR_110889.1| PREDICTED: Homo sapiens ANO1 antisense RNA 2 (head to head) (ANO1-AS2), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310120729|ref|XR_110889.1| PREDICTED: Homo sapiens ANO1 antisense RNA 2 (head to head) (ANO1-AS2), misc_RNA"	NA	NA	NA	NA	NA	XR_110889.1	NA	NA	NA	NA	NA	Unknown
CUST_27927_PI429285431	1.8124567	A	1.6249048	A	1.13882960266161	0	lncRNA	29528-1_{1..413}	n325171|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330895|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330895|-1.1220900|-0.2889097	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325171|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330895|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330895|-1.1220900|-0.2889097	chr2	113977651	113978063	+	NA	NA	NA	NA	PAX8	"hg19_refFlat_PAX8:range=chr2:113976110-1140359715'pad=0,hg19_refFlat_PAX8:range=chr2:113976110-1140359715'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_PAX8:range=chr2:113977669-1140359715'pad=0,hg19_refFlat_PAX8:range=chr2:113977669-1140359715'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50chr2:113973574-113988654"	NA	inner
CUST_9787_PI429285431	0.8939249	A	0.90715456	A	0.990871815626216	0	lncRNA	11303-1_{1..591}	lnc-KIAA1456.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1456.1-1:1	chr8	 12729387	 12729977	+	lnc-KIAA1456.1-1	lnc-KIAA1456.1-1:1	XLOC_006722	linc-C8orf79-1	NA	NA	NA	inter
LNCA_21_P0003644	0.9113612	A	0.9272808	A	0.989026032309844	0	lncRNA	TCONS_00008211	NA	NA	NA	NA	XLOC_003669	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003669), lincRNA [TCONS_00008211]"	chr4:120597807-120610372	hs|4q26	Agilent_HUMAN_G3V2	TCONS_00008211	TCONS_00008211	chr4	120597807	120610372	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010835	0.9121308	A	0.92828983	A	0.988861906942117	0	lncRNA	TCONS_l2_00003131	NA	NA	NA	NA	XLOC_l2_001652	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001652), lincRNA [TCONS_l2_00003131]"	chr10:82009139-82009198	hs|10q23.1	Agilent_HUMAN_G3V2	TCONS_l2_00003131	TCONS_l2_00003131	chr10	 82009139	 82009198	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41649_PI429285431	6.299218	P	6.519498	P	0.858398821187476	0	lncRNA	43062-1_{1..63}	ENST00000578629 ncrna:miRNA chromosome:GRCh37:7:102111916:102111978:1 gene:ENSG00000264471 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578629 ncrna:miRNA chromosome:GRCh37:7:102111916:102111978:1 gene:ENSG00000264471 gene_biotype:miRNA transcript_biotype:miRNA	chr7	102111916	102111978	+	ENSG00000264471	ENST00000578629	NA	NA	ALKBH4	NA	chr7:102101916-102105321	inter
CUST_19183_PI429285431	6.4825706	P	6.9561744	P	0.720163406915808	0	lncRNA	20853-1_{1..752}	lnc-NSFL1C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NSFL1C-1:1	chr20	  1454437	  1455188	-	lnc-NSFL1C-1	lnc-NSFL1C-1:1	ENSG00000258950.1	RP4-776F14.3	NSFL1C	NA	chr20:1444437-1448337	inter
LNCA_21_P0009123	0.916144	A	1.876715	A	0.513853496521388	0	lncRNA	TCONS_00025008	NA	NA	NA	NA	XLOC_011942	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011942), lincRNA [TCONS_00025008]"	chr16:52331631-52331572	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00025008	TCONS_00025008	chr16	 52331572	 52331631	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009047	3.801344	P	4.3336067	P	0.691469393542458	0	lncRNA	TCONS_00024699	NA	NA	NA	NA	XLOC_011978	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011978), lincRNA [TCONS_00024699]"	chr16:65904956-65904897	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024699	TCONS_00024699	chr16	 65904897	 65904956	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33872_PI429285431	0.92665154	A	1.1142576	A	0.878061526953898	0	lncRNA	35416-1_{1..815}	n340660|AJ406952|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3122|NULL|1.1600800|-0.1552729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340660|AJ406952|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3122|NULL|1.1600800|-0.1552729	chr17	 39471168	 39471982	-	NA	NA	NA	NA	KRTAP17-1	NA	chr17:39471169-39471947	inner
CUST_22870_PI429285431	1.873896	A	1.1177051	A	1.68902525491811	0	lncRNA	24447-1_{1..555}	lnc-C2orf42-3:22	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:22	chr2	 70313256	 70313810	-	lnc-C2orf42-3	lnc-C2orf42-3:22	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_11871_PI429285431	2.089872	A	3.1634655	A	0.475134048404783	0	lncRNA	13451-1_{1..678}	lnc-AC018682.6.1-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC018682.6.1-1:12	chr2	 46668698	 46669375	+	lnc-AC018682.6.1-1	lnc-AC018682.6.1-1:12	XLOC_001455	linc-LOC388946	NA	NA	NA	inter
CUST_42566_PI429285431	4.4582777	P	4.8682184	P	0.752654309892356	0	lncRNA	45399-1_{1..82}	ENST00000459386 ncrna:snoRNA chromosome:GRCh37:9:33952767:33952848:-1 gene:ENSG00000238886 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459386 ncrna:snoRNA chromosome:GRCh37:9:33952767:33952848:-1 gene:ENSG00000238886 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	 33952767	 33952848	-	ENSG00000238886	ENST00000459386	NA	NA	UBAP2	NA	chr9:33942767-33962848	inner
LNCA_21_P0004183	0.91046554	A	1.7786888	A	0.547821100231285	0	lncRNA	ENST00000504620	NA	NA	NA	NA	XLOC_005039	NA	ENST00000504620	NA	NA	"BROAD Institute lincRNA (XLOC_005039), lincRNA [TCONS_00009796]"	chr5:144717737-144717678	hs|5q32	Agilent_HUMAN_G3V2	ENST00000504620	ENST00000504620	chr5	144717678	144717737	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45998_PI429285431	6.834878	P	6.0007377	P	1.78279435752923	0	lncRNA	50285-2_{3001..4389}	"gi|219881534|ref|NR_002774.3| Homo sapiens 5-hydroxytryptamine (serotonin) receptor 7 pseudogene 1 (HTR7P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219881534|ref|NR_002774.3| Homo sapiens 5-hydroxytryptamine (serotonin) receptor 7 pseudogene 1 (HTR7P1), non-coding RNA"	Chr12	 13156376	 13157764	+	93164	NR_002774.3	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70"	NA	inter
CUST_21321_PI429285431	10.651805	P	11.057762	P	0.754735479064129	0	lncRNA	22944-1_{1..549}	lnc-CCDC51-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC51-1:1	chr3	 48487738	 48488286	-	lnc-CCDC51-1	lnc-CCDC51-1:1	ENSG00000244380.1	RP11-24C3.2	ATRIP	NA	chr3:48488218-48498060	inter
CUST_10779_PI429285431	0.9010134	A	1.317117	A	0.749445981193587	0	lncRNA	12314-1_{1..231}	lnc-DNAH5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAH5-2:1	chr5	 12861970	 12862200	-	lnc-DNAH5-2	lnc-DNAH5-2:1	XLOC_004737	linc-CTNND2-3	NA	NA	NA	inter
CUST_51008_PI429285431	0.91936505	A	0.9270699	A	0.994673640570119	0	lncRNA	54652-1_{1..504}	hg19_lincRNAsTranscripts_TCONS_l2_00007065 range=chr13:21877673-21918936 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007065 range=chr13:21877673-21918936 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 21877673	 21878176	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6316_PI429285431	4.135905	P	3.8098207	P	1.25360626940741	0	lncRNA	6240-1_{1..3000}	"transcript_id ""ENST00000448587.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000448587.1"" | genecode_v17"	chr19	  5558178	  5561177	-	ENSG00000223573.2	ENST00000448587.1	TINCR	TINCR-001	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20"	NA	inter
CUST_15689_PI429285431	0.90276337	A	0.9043791	A	0.998880688203242	0	lncRNA	17376-1_{1..1349}	lnc-NFRKB-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NFRKB-1:2	chr11	129683863	129685211	-	lnc-NFRKB-1	lnc-NFRKB-1:2	XLOC_009602	linc-ARHGAP32-1	TMEM45B	NA	chr11:129685741-129694687	inter
LNCA_21_P0002260	0.88709795	A	0.89879316	A	0.991926267241147	0	lncRNA	TCONS_00003799	NA	NA	NA	NA	XLOC_001595	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001595), lincRNA [TCONS_00003799]"	chr2:102604636-102605359	hs|2q11.2	Agilent_HUMAN_G3V2	TCONS_00003799	TCONS_00003799	chr2	102604636	102605359	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17213_PI429285431	3.2002215	A	2.7172422	A	1.39762691835123	0	lncRNA	18927-1_{1..227}	lnc-C21orf63-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C21orf63-2:2	chr21	 33918242	 33918468	+	lnc-C21orf63-2	lnc-C21orf63-2:2	XLOC_013914	linc-OLIG2-5	NA	NA	NA	inter
CUST_18670_PI429285431	3.281648	P	3.5746088	P	0.816225223806735	0	lncRNA	20372-1_{1..541}	lnc-WFIKKN2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WFIKKN2-1:5	chr17	 48986517	 48987057	+	lnc-WFIKKN2-1	lnc-WFIKKN2-1:5	ENSG00000229980	AC091062.2	NA	NA	NA	inter
CUST_41493_PI429285431	2.4586163	A	3.1748629	A	0.60867895888697	0	lncRNA	42706-1_{1..100}	ENST00000385282 ncrna:miRNA chromosome:GRCh37:16:69966984:69967083:1 gene:ENSG00000208017 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385282 ncrna:miRNA chromosome:GRCh37:16:69966984:69967083:1 gene:ENSG00000208017 gene_biotype:miRNA transcript_biotype:miRNA	chr16	 69966984	 69967083	+	ENSG00000208017	ENST00000385282	NA	NA	WWP2	NA	chr16:69956984-69975643	inner
CUST_48459_PI429285431	7.2297583	P	7.110437	P	1.0862237403087	0	lncRNA	52311-2_{3001..5492}	hg19_lincRNAsTranscripts_TCONS_l2_00001793 range=chr1:222645271-222652914 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001793 range=chr1:222645271-222652914 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	222648271	222650762	-	NA	NA	NA	NA	HHIPL2	NA	chr1:222641463-222662914	inter
CUST_813_PI429285431	3.6859124	P	4.165394	P	0.717235300076235	0	lncRNA	806-1_{1..525}	"transcript_id ""ENST00000423706.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423706.1"" | genecode_v17"	chr2	 23553535	 23554059	-	ENSG00000223530.1	ENST00000423706.1	AC012506.1	AC012506.1-001	NA	NA	NA	inter
LNCA_21_P0006333	1.1364568	A	0.87279755	A	1.20051984333279	0	lncRNA	TCONS_00016899	NA	NA	NA	NA	XLOC_007895	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007895), lincRNA [TCONS_00016899]"	chr9:139155639-139155580	hs|9q34.3	Agilent_HUMAN_G3V2	TCONS_00016899	TCONS_00016899	chr9	139155580	139155639	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3611762	6.917326	P	6.2084546	P	1.63452495100857	0	lncRNA	XR_108662	XR_108662	XR_108662	   401264	Hs.544586	FLJ37798	uncharacterized LOC401264	NA	THC2625140	NA	"PREDICTED: Homo sapiens hypothetical LOC401264 (FLJ37798), miscRNA [XR_108662]"	chr6:52448705-52448764	hs|6p12.2	Agilent_HUMAN_G3V2	XR_108662	XR_108662	chr6	 52448705	 52448764	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31117_PI429285431	1.0968437	A	0.88396555	A	1.15899805881304	0	lncRNA	32911-1_{1..766}	n337408|DQ786204|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393257|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393257|-1.4338400|-0.4981867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337408|DQ786204|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393257|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393257|-1.4338400|-0.4981867	chr5	 69249156	 69249921	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41898_PI429285431	1.7575928	A	0.88350743	A	1.83284574290967	0	lncRNA	43613-1_{1..85}	ENST00000579723 ncrna:miRNA chromosome:GRCh37:8:81153624:81153708:1 gene:ENSG00000265588 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579723 ncrna:miRNA chromosome:GRCh37:8:81153624:81153708:1 gene:ENSG00000265588 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 81153624	 81153708	+	ENSG00000265588	ENST00000579723	NA	NA	NA	NA	NA	inter
LNCA_21_P0009456	3.2969234	P	2.8898444	A	1.32599836816108	0	lncRNA	TCONS_00026281	NA	NA	NA	NA	XLOC_012627	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012627), lincRNA [TCONS_00026281]"	chr18:11491434-11491606	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_00026281	TCONS_00026281	chr18	 11491434	 11491606	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16517_PI429285431	0.8862736	A	1.4310123	A	0.685515551383386	0	lncRNA	18218-1_{1..378}	lnc-EXT1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXT1-3:2	chr8	118695828	118696205	-	lnc-EXT1-3	lnc-EXT1-3:2	XLOC_007189	linc-RAD21-3	NA	NA	NA	inter
CUST_348_PI429285431	0.899006	A	0.88765216	A	1.00790093110433	0	lncRNA	341-1_{1..459}	"transcript_id ""ENST00000429080.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429080.1"" | genecode_v17"	chr1	106470246	106470704	-	ENSG00000233047.1	ENST00000429080.1	RP11-24P14.1	RP11-24P14.1-001	NA	NA	NA	inter
CUST_25312_PI429285431	5.1070476	P	4.7206974	P	1.30708249677952	0	lncRNA	26842-1_{1..752}	lnc-SNURF-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SNURF-3:10	chr15	 25419960	 25420711	+	lnc-SNURF-3	lnc-SNURF-3:10	ENSG00000224078.4	SNHG14	SNRPN	NA	chr15:25409960-25430017	inter
CUST_41459_PI429285431	0.8958012	A	1.2451563	A	0.784934893717125	0	lncRNA	42647-1_{1..66}	ENST00000581299 ncrna:miRNA chromosome:GRCh37:12:98389161:98389226:-1 gene:ENSG00000263890 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581299 ncrna:miRNA chromosome:GRCh37:12:98389161:98389226:-1 gene:ENSG00000263890 gene_biotype:miRNA transcript_biotype:miRNA	chr12	 98389161	 98389226	-	ENSG00000263890	ENST00000581299	NA	NA	NA	NA	NA	inter
LNCA_21_P0005320	9.870374	P	10.232849	P	0.777829038139344	0	lncRNA	ENST00000412754	NA	NA	NA	NA	XLOC_006544	NA	ENST00000412754	NA	NA	"BROAD Institute lincRNA (XLOC_006544), lincRNA [TCONS_00013214]"	chr7:100434995-100434936	hs|7q22.1	Agilent_HUMAN_G3V2	ENST00000412754	ENST00000412754	chr7	100434936	100434995	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43123_PI429285431	1.2044864	A	0.91197044	A	1.2247743377466	0	lncRNA	47938-1_{1..416}	ENST00000588886 havana:3prime_overlapping_ncrna chromosome:GRCh37:19:15771258:15772103:1 gene:ENSG00000266948 gene_biotype:3prime_overlapping_ncrna transcript_biotype:3prime_overlapping_ncrna	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000588886 havana:3prime_overlapping_ncrna chromosome:GRCh37:19:15771258:15772103:1 gene:ENSG00000266948 gene_biotype:3prime_overlapping_ncrna transcript_biotype:3prime_overlapping_ncrna	chr19	 15771258	 15771673	+	ENSG00000266948	ENST00000588886	NA	NA	CYP4F3	NA	chr19:15761258-15771570	inner
CUST_22450_PI429285431	0.9208868	A	0.92159444	A	0.999509621603956	0	lncRNA	24037-1_{1..470}	lnc-ARL13B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARL13B-1:1	chr3	 93800453	 93800922	+	lnc-ARL13B-1	lnc-ARL13B-1:1	ENSG00000243497.1	RP13-503K1.4	NSUN3	"hg19_refFlat_RBBP4:range=chr1:33117604-331453065'pad=0,hg19_refFlat_RBBP4:range=chr1:33117604-331453065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RBBP4:range=chr1:33116908-331453065'pad=0,hg19_refFlat_RBBP4:range=chr1:33116908-331453065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30chr3:93790453-93810665"	NA	inner
LNCA_21_P0002770	0.9165931	A	0.9568325	A	0.972493558990559	0	lncRNA	ENST00000465194	NA	NA	NA	NA	XLOC_002845	NA	ENST00000465194	NA	NA	"BROAD Institute lincRNA (XLOC_002845), lincRNA [TCONS_00005598]"	chr3:142656604-142656663	hs|3q23	Agilent_HUMAN_G3V2	ENST00000465194	ENST00000465194	chr3	142656604	142656663	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18462_PI429285431	2.9390666	P	3.2832673	P	0.787744291663563	0	lncRNA	20184-1_{1..599}	lnc-CXXC11-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CXXC11-2:4	chr2	242916601	242917199	+	lnc-CXXC11-2	lnc-CXXC11-2:4	ENSG00000237940	AC093642.3	NA	NA	NA	inter
CUST_35950_PI429285431	6.3418875	P	6.502734	P	0.894500069820583	0	lncRNA	37308-4_{9001..12000}	n344583|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_131|NULL|-1.2937000|-0.1534478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344583|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_131|NULL|-1.2937000|-0.1534478	chrX	114966339	114969338	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_39292_PI429285431	10.272929	P	10.749528	P	0.718669816240059	0	lncRNA	40261-2_{3001..3406}	n386284|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gko.2||1.9943300|-0.1188933	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386284|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gko.2||1.9943300|-0.1188933	chr20	 62670489	 62670894	+	NA	NA	NA	NA	PRPF6	NA	chr20:62657489-62664453	inter
LNCA_21_P0005290	0.9089894	A	0.9281676	A	0.986794650639513	0	lncRNA	ENST00000430537	NA	NA	NA	NA	XLOC_006398	NA	ENST00000430537	NA	NA	"BROAD Institute lincRNA (XLOC_006398), lincRNA [TCONS_00013148]"	chr7:30218568-30216555	hs|7p14.3	Agilent_HUMAN_G3V2	ENST00000430537	ENST00000430537	chr7	 30216555	 30218568	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47733_PI429285431	1.6377933	A	0.9298832	A	1.63343619321754	0	lncRNA	51686-2_{3001..6000}	"gi|385137099|ref|NR_047637.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 67, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137099|ref|NR_047637.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 67, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047637.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003653	1.4412841	A	0.9220018	A	1.43324207322258	0	lncRNA	TCONS_00008258	NA	NA	NA	NA	XLOC_003697	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003697), lincRNA [TCONS_00008258]"	chr4:135948610-135948669	hs|4q28.3	Agilent_HUMAN_G3V2	TCONS_00008258	TCONS_00008258	chr4	135948610	135948669	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002362	1.4772966	A	1.2686454	A	1.15560728190981	0	lncRNA	TCONS_00004038	NA	NA	NA	NA	XLOC_001877	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001877), lincRNA [TCONS_00004038]"	chr2:222601426-222601485	hs|2q36.1	Agilent_HUMAN_G3V2	TCONS_00004038	TCONS_00004038	chr2	222601426	222601485	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38504_PI429285431	4.541929	P	3.9010057	P	1.55932678236368	0	lncRNA	39517-2_{3001..3763}	n383066|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gqm.2||1.5746600|-0.3348219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383066|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gqm.2||1.5746600|-0.3348219	chr17	 16694248	 16695010	+	NA	NA	NA	NA	NA	"hg19_refFlat_SRP68:range=chr17:74035787-740465685'pad=0,hg19_refFlat_SRP68:range=chr17:74035787-740465685'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_SRP68:range=chr17:74035787-740685725'pad=0,hg19_refFlat_SRP68:range=chr17:74035787-740685725'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60"	NA	inter
LNCA_21_P0006660	3.4721174	P	3.5192251	P	0.967874770456456	0	lncRNA	ENST00000436140	NA	BC042983	NA	Hs.553324	XLOC_008414	NA	ENST00000436140	THC2606786	NA	"BROAD Institute lincRNA (XLOC_008414), lincRNA [TCONS_00017798]"	chr10:25402603-25405587	hs|10p12.1	Agilent_HUMAN_G3V2	ENST00000436140	ENST00000436140	chr10	 25402603	 25405587	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50057_PI429285431	0.9064764	A	0.90812045	A	0.998861080439549	0	lncRNA	53792-1_{1..508}	hg19_lincRNAsTranscripts_TCONS_l2_00027779 range=chr8:58114215-58144010 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027779 range=chr8:58114215-58144010 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 58114215	 58114722	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31258_PI429285431	1.3180833	A	0.9184119	A	1.31920740310363	0	lncRNA	33049-1_{1..1297}	n337714|BC039491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|96|NULL|-0.9807230|-0.1918453	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337714|BC039491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|96|NULL|-0.9807230|-0.1918453	chr1	 11669587	 11670883	+	NA	NA	NA	NA	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20"	NA	inter
LNCA_21_P0008968	5.448699	P	5.5275307	P	0.946824078138899	0	lncRNA	TCONS_00024464	NA	NA	NA	NA	XLOC_011786	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011786), lincRNA [TCONS_00024464]"	chr16:73809123-73809182	hs|16q22.3	Agilent_HUMAN_G3V2	TCONS_00024464	TCONS_00024464	chr16	 73809123	 73809182	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007904	4.959495	P	5.254038	P	0.815330562345736	0	lncRNA	TCONS_00021453	NA	NA	NA	NA	XLOC_010257	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010257), lincRNA [TCONS_00021453]"	chr12:128600321-128600262	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00021453	TCONS_00021453	chr12	128600262	128600321	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13253_PI429285431	6.8850784	P	6.9007654	P	0.989185501909733	0	lncRNA	14884-1_{1..3000}	lnc-CHST12-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHST12-1:3	chr7	  2483258	  2486257	+	lnc-CHST12-1	lnc-CHST12-1:3	XLOC_005968	linc-LFNG	CHST12	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-30.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70chr7:2473258-2474240"	NA	inter
CUST_37509_PI429285431	0.97178566	A	2.0676847	A	0.467844487592594	0	lncRNA	38612-1_{1..569}	n345982|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1531|NULL|-1.3037000|-0.5112937	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345982|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1531|NULL|-1.3037000|-0.5112937	chr7	100550660	100551228	-	NA	NA	NA	NA	MUC3A	NA	chr7:100547257-100561637	inter
CUST_7592_PI429285431	2.4397051	A	1.1682361	A	2.41407249313197	0	lncRNA	9227-1_{1..2807}	lnc-CHSY1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHSY1-5:1	chr15	101459009	101461815	-	lnc-CHSY1-5	lnc-CHSY1-5:1	ENSG00000247392	ENSG00000259583.1	LRRK1	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ALDH1A3:range=chr15:101420113-1014549785'pad=0,hg19_refFlat_ALDH1A3:range=chr15:101420113-1014549785'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20chr15:101459460-101469488"	NA	inner
CUST_48746_PI429285431	5.767734	P	5.516748	P	1.1900201482231	0	lncRNA	52584-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00014911 range=chr2:132783681-132796342 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014911 range=chr2:132783681-132796342 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	132783681	132786680	-	NA	NA	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30"	NA	inter
CUST_23348_PI429285431	0.8990416	A	1.6990137	A	0.574360284833432	0	lncRNA	24917-1_{1..948}	lnc-TCTN3-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCTN3-1:12	chr10	 97667420	 97668367	-	lnc-TCTN3-1	lnc-TCTN3-1:12	ENSG00000226688.1	RP11-429G19.2	C10orf131	NA	chr10:97667722-97677532	inter
CUST_35207_PI429285431	1.314006	A	1.5237398	A	0.864696766786931	0	lncRNA	36607-1_{1..1759}	n342191|AK097380|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4681|NULL|-0.8304900|-0.2940624	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342191|AK097380|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4681|NULL|-0.8304900|-0.2940624	chr3	142849527	142851285	+	NA	NA	NA	NA	CHST2	NA	chr3:142839527-142841812	inter
CUST_45047_PI429285431	0.90673804	A	0.9140849	A	0.994920489272964	0	lncRNA	49542-2_{3001..6000}	"gi|298566296|ref|NR_033766.1| Homo sapiens forkhead box P2 (FOXP2), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298566296|ref|NR_033766.1| Homo sapiens forkhead box P2 (FOXP2), transcript variant 7, non-coding RNA"	Chr7	113729365	113732364	+	93986	NR_033766.1	NA	NA	NA	NA	NA	inter
CUST_29710_PI429285431	1.7440549	A	0.87188226	A	1.83041735991475	0	lncRNA	31472-1_{1..218}	n333377|BC003675|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086270|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086270|0.2898940|-0.1705479	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333377|BC003675|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086270|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086270|0.2898940|-0.1705479	chr20	 44174325	 44174542	-	NA	NA	NA	NA	SPINLW1-WFDC6	NA	chr20:44164919-44176065	inner
CUST_30560_PI429285431	5.966748	P	6.5221295	P	0.680477092054318	0	lncRNA	32341-1_{1..421}	n335752|X06161|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321158|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321158|1.2565100|-0.0638821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335752|X06161|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321158|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321158|1.2565100|-0.0638821	chr11	  2154737	  2155157	-	NA	NA	NA	NA	IGF2	NA	chr11:2150347-2169560	inner
CUST_27159_PI429285431	7.203123	P	7.2371554	P	0.976686594319008	0	lncRNA	28695-1_{1..318}	n324283|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043253|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043253|-1.1334200|-0.1179359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324283|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043253|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043253|-1.1334200|-0.1179359	chr6	170426386	170426703	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24442_PI429285431	1.9250802	A	1.8118827	A	1.08162282380153	0	lncRNA	25995-1_{1..775}	lnc-FGF10-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FGF10-3:2	chr5	 44808744	 44809518	-	lnc-FGF10-3	lnc-FGF10-3:2	ENSG00000251141.1	RP11-53O19.1	MRPS30	NA	chr5:44809027-44815616	inter
CUST_32300_PI429285431	3.207856	P	4.412675	P	0.433823767535518	0	lncRNA	33983-1_{1..1252}	n338876|BC033513|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1302|NULL|5.3047500|-0.1410717	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338876|BC033513|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1302|NULL|5.3047500|-0.1410717	chr2	 71221572	 71222823	+	NA	NA	NA	NA	TEX261	"hg19_refFlat_TEX261:range=chr2:71215730-712218875'pad=0,hg19_refFlat_TEX261:range=chr2:71215730-712218875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90chr2:71213068-71222001"	NA	inner
CUST_426_PI429285431	3.4445953	P	4.0710077	P	0.647785284299977	0	lncRNA	418-1_{1..648}	"transcript_id ""ENST00000452883.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452883.1"" | genecode_v17"	chr1	145376167	145376814	-	ENSG00000233396.1	ENST00000452883.1	RP11-458D21.1	RP11-458D21.1-003	NBPF10	NA	chr1:145366167-145368684	inter
CUST_16311_PI429285431	1.9518871	A	2.543685	A	0.663515512389068	0	lncRNA	18017-1_{1..364}	lnc-AC145676.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC145676.2.1-2:1	chr7	   182568	   182931	-	lnc-AC145676.2.1-2	lnc-AC145676.2.1-2:1	XLOC_006327	linc-VIPR2-3	NA	NA	NA	inter
CUST_43961_PI429285431	4.273427	P	5.405542	P	0.456246374545057	0	lncRNA	48666-1_{1..2645}	"gi|374532827|ref|NR_046260.1| Homo sapiens uncharacterized LOC100216479 (LOC100216479), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|374532827|ref|NR_046260.1| Homo sapiens uncharacterized LOC100216479 (LOC100216479), transcript variant 3, non-coding RNA"	Chr2	131174323	131176967	-	100216479	NR_046260.1	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
CUST_280_PI429201921	0.88800526	A	0.88801056	A	0.999996326326691	0	lncRNA	199-1_{1..3000}	TC13001267.hg.1	 TCONS_l2_00006987-XLOC_l2_003840 // Broad TUCP // linc-DAOA-3 chr13:+:104073680-104080432 // chr13 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00006986-XLOC_l2_003840 // Broad TUCP // linc-DAOA-3 chr13:+:104073591-104080432 // chr13 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00007459-XLOC_l2_003840 // Broad TUCP // linc-DAOA-3 chr13:+:104077549-104080035 // chr13 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr13:+:104073591-104080432	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00006986-XLOC_l2_003840	linc-DAOA-3	chr13	104073591	104080432	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16317_PI429285431	0.9250772	A	0.96325177	A	0.973886418523941	0	lncRNA	18023-2_{3001..3620}	lnc-AC018816.3.1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC018816.3.1-7:1	chr3	  5743677	  5744296	-	lnc-AC018816.3.1-7	lnc-AC018816.3.1-7:1	XLOC_003027	linc-SUMF1-2	NA	NA	NA	inter
LNCA_21_P0005724	1.0627797	A	1.3962964	A	0.793599652988014	0	lncRNA	TCONS_00014765	NA	NA	NA	NA	XLOC_006848	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006848), lincRNA [TCONS_00014765]"	chr8:76034629-76048753	hs|8q21.11	Agilent_HUMAN_G3V2	TCONS_00014765	TCONS_00014765	chr8	 76034629	 76048753	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39575_PI429285431	1.6887788	A	2.4361255	A	0.595698115411741	0	lncRNA	40518-1_{1..642}	n387547|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011hki.1||-1.0398400|-0.1610225	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387547|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011hki.1||-1.0398400|-0.1610225	chr6	  1324752	  1325393	+	NA	NA	NA	NA	FOXQ1	NA	chr6:1314752-1314993	inter
CUST_31399_PI429285431	1.2591695	A	0.959381	A	1.23096394002899	0	lncRNA	33175-1_{1..1087}	n337865|BC039388|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|248|NULL|-1.0536600|-0.1965527	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337865|BC039388|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|248|NULL|-1.0536600|-0.1965527	chr15	 64220472	 64221558	+	NA	NA	NA	NA	DAPK2	NA	chr15:64210472-64238152	inner
CUST_10227_PI429285431	0.90562946	A	0.9146234	A	0.993785267680893	0	lncRNA	11751-1_{1..220}	lnc-ZFP42-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP42-7:3	chr4	188133530	188133749	+	lnc-ZFP42-7	lnc-ZFP42-7:3	XLOC_003825	linc-ZFP42-7	NA	NA	NA	inter
CUST_51007_PI429285431	5.090343	P	5.2648935	P	0.88604354038275	0	lncRNA	54651-1_{1..936}	hg19_lincRNAsTranscripts_TCONS_l2_00006721 range=chr13:21872355-21927316 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006721 range=chr13:21872355-21927316 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 21872355	 21873290	+	NA	NA	NA	NA	ZDHHC20	NA	chr13:21932515-21937316	inter
CUST_23104_PI429285431	3.910754	P	4.431411	P	0.697054323949957	0	lncRNA	24675-1_{1..864}	lnc-C9orf163-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C9orf163-1:1	chr9	139437582	139438445	+	lnc-C9orf163-1	lnc-C9orf163-1:1	ENSG00000227512.1	RP11-413M3.4	NOTCH1	NA	chr9:139427582-139440238	inner
CUST_45115_PI429285431	1.4184108	A	0.98273754	A	1.35254187415081	0	lncRNA	49596-1_{1..2714}	"gi|336595170|ref|NR_038945.1| Homo sapiens uncharacterized LOC100128264 (LOC100128264), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336595170|ref|NR_038945.1| Homo sapiens uncharacterized LOC100128264 (LOC100128264), non-coding RNA"	Chr7	154858777	154861490	-	100128264	NR_038945.1	NA	NA	NA	"hg19_refFlat_HTR5A:range=chr7:154862610-1548761975'pad=0,hg19_refFlat_HTR5A:range=chr7:154862610-1548761975'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.70"	NA	inter
CUST_12076_PI429285431	1.5122765	A	2.844544	A	0.397143556105417	0	lncRNA	13667-1_{1..384}	lnc-GLIS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLIS2-1:1	chr16	  4305482	  4305865	+	lnc-GLIS2-1	lnc-GLIS2-1:1	XLOC_011633	linc-GLIS2-1	TFAP4	NA	chr16:4307187-4315787	inter
CUST_32286_PI429285431	0.9203512	A	0.95807606	A	0.974190041061177	0	lncRNA	33971-1_{1..3000}	n338864|AK128122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1288|NULL|-1.0842300|-0.3418699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338864|AK128122|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1288|NULL|-1.0842300|-0.3418699	chr2	 66017172	 66020171	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20521_PI429285431	0.91670334	A	1.0952172	A	0.883612749279194	0	lncRNA	22163-1_{1..518}	lnc-FKBP14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FKBP14-1:1	chr7	 30114675	 30115192	-	lnc-FKBP14-1	lnc-FKBP14-1:1	ENSG00000231519.1	AC007285.7	PLEKHA8	NA	chr7:30104675-30124731	inner
CUST_3532_PI429285431	9.09051	P	9.283905	P	0.874545287626546	0	lncRNA	3501-1_{1..625}	"transcript_id ""ENST00000449730.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449730.1"" | genecode_v17"	chr9	120602600	120603224	-	ENSG00000231901.1	ENST00000449730.1	RP11-281A20.1	RP11-281A20.1-001	NA	NA	NA	inter
CUST_37069_PI429285431	2.231749	A	1.5383011	A	1.61714371912954	0	lncRNA	38199-2_{3001..6000}	n345516|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1065|NULL|-1.4494000|-0.4407499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345516|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1065|NULL|-1.4494000|-0.4407499	chr2	 32073220	 32076219	-	NA	NA	NA	NA	MEMO1	NA	chr2:32092892-32102722	inter
CUST_33673_PI429285431	0.88481516	A	0.8953464	A	0.992726878781215	0	lncRNA	35235-1_{1..3000}	n340439|BC040568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2900|NULL|-0.5722260|-0.4142859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340439|BC040568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2900|NULL|-0.5722260|-0.4142859	chr5	 42188374	 42191373	+	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.61;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00"	NA	inter
CUST_27251_PI429285431	7.366055	P	7.096887	P	1.20511264065635	0	lncRNA	28801-1_{1..712}	n324394|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316060|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316060|-1.2974700|-0.4110565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324394|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316060|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316060|-1.2974700|-0.4110565	chr6	132266480	132267191	+	NA	NA	NA	NA	CTGF	NA	chr6:132269316-132272518	inner
LNCA_21_P0003572	0.89296013	A	0.9072184	A	0.990165597489523	0	lncRNA	TCONS_00007988	NA	NA	NA	NA	XLOC_003455	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003455), lincRNA [TCONS_00007988]"	chr4:11338981-11339040	hs|4p15.33	Agilent_HUMAN_G3V2	TCONS_00007988	TCONS_00007988	chr4	 11338981	 11339040	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29757_PI429285431	1.2146871	A	1.2151951	A	0.999647943218813	0	lncRNA	31519-1_{1..630}	n333442|BC018062|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000089554|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000089554|2.9671800|-0.0562685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333442|BC018062|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000089554|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000089554|2.9671800|-0.0562685	chr20	  3063188	  3063817	-	NA	NA	NA	NA	AVP	NA	chr20:3063202-3065370	inner
CUST_7190_PI429285431	0.89000297	A	1.0878053	A	0.87187769115508	0	lncRNA	7512-1_{1..355}	"transcript_id ""ENST00000410567.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410567.1"" | genecode_v17"	chr3	156735131	156735485	+	ENSG00000222499.1	ENST00000410567.1	RN7SKP177	RN7SKP177-201	LEKR1	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-28.80chr3:156725131-156745485"	NA	inner
CUST_38842_PI429285431	7.4402437	P	7.3546066	P	1.06115624883025	0	lncRNA	39833-1_{1..1314}	n384657|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jxc.3||1.9889500|-0.2455352	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384657|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jxc.3||1.9889500|-0.2455352	chr5	 68921202	 68922515	-	NA	NA	NA	NA	LOC100652852	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00chr5:68949135-68950156"	NA	inter
CUST_46987_PI429285431	3.3688693	P	2.357573	A	2.01572146619782	0	lncRNA	51086-2_{3001..5151}	"gi|217035127|ref|NR_024565.1| Homo sapiens zinc finger protein 271 (ZNF271), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|217035127|ref|NR_024565.1| Homo sapiens zinc finger protein 271 (ZNF271), transcript variant 1, non-coding RNA"	Chr18	 32873236	 32875386	+	10778	NR_024565.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0007930	1.7718867	A	0.88571584	A	1.84826402392419	0	lncRNA	ENST00000441430	NA	NA	NA	NA	XLOC_010352	NA	ENST00000441430	THC2684040	NA	"BROAD Institute lincRNA (XLOC_010352), lincRNA [TCONS_00021539]"	chr13:39153047-39153106	hs|13q13.3	Agilent_HUMAN_G3V2	ENST00000441430	ENST00000441430	chr13	 39153047	 39153106	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011183	5.373953	P	4.8397293	P	1.44816270277098	0	lncRNA	TCONS_l2_00007201	NA	NA	NA	NA	XLOC_l2_003992	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003992), lincRNA [TCONS_l2_00007201]"	chr13:52741855-52741796	hs|13q14.3	Agilent_HUMAN_G3V2	TCONS_l2_00007201	TCONS_l2_00007201	chr13	 52741796	 52741855	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45071_PI429285431	13.427472	P	13.662108	P	0.849899406446784	0	lncRNA	49556-1_{1..1737}	"gi|47174756|ref|NR_002144.1| Homo sapiens mitogen-activated protein kinase kinase 2 pseudogene (LOC407835), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|47174756|ref|NR_002144.1| Homo sapiens mitogen-activated protein kinase kinase 2 pseudogene (LOC407835), non-coding RNA"	Chr7	128766325	128768061	+	407835	NR_002144.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0013737	5.166088	P	4.5804353	P	1.50071778621048	0	lncRNA	DQ673930	NA	DQ673930	NA	NA	XLOC_l2_015315	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015315), lincRNA [TCONS_l2_00030039]"	chr9:102122014-102121955	hs|9q22.33	Agilent_HUMAN_G3V2	DQ673930	DQ673930	chr9	102121955	102122014	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2708_PI429285431	0.9142816	A	2.3205662	A	0.377282058474822	0	lncRNA	2693-1_{1..359}	"transcript_id ""ENST00000431017.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431017.1"" | genecode_v17"	chr6	166186689	166187047	-	ENSG00000223942.1	ENST00000431017.1	RP11-252P19.2	RP11-252P19.2-001	NA	NA	NA	inter
LNCA_21_P0014539	0.87614226	A	1.1118966	A	0.849240841623306	0	lncRNA	XR_110236	XR_110236	XR_110236	NA	NA	LOC100506832	uncharacterized LOC100506832	ENST00000553826	THC2646260	NA	"PREDICTED: Homo sapiens hypothetical LOC100506832 (LOC100506832), miscRNA [XR_110236]"	chr14:91111402-91111461	hs|14q32.11	Agilent_HUMAN_G3V2	XR_110236	XR_110236	chr14	 91111402	 91111461	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8872_PI429285431	2.3417175	A	0.88598514	A	2.7429576731715	0	lncRNA	10409-2_{3001..4060}	lnc-MYC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYC-1:1	chr8	128945667	128946726	+	lnc-MYC-1	lnc-MYC-1:1	ENSG00000250002	XLOC_006923	NA	NA	NA	inter
LNCA_21_P0014140	0.87684333	A	0.8704743	A	1.00442443422161	0	lncRNA	XR_108566	XR_108566	XR_108566	NA	NA	LOC100505959	uncharacterized LOC100505959	NA	THC2654600	NA	"PREDICTED: Homo sapiens hypothetical LOC100505959 (LOC100505959), miscRNA [XR_108566]"	chr5:16141746-16141805	hs|5p15.1	Agilent_HUMAN_G3V2	XR_108566	XR_108566	chr5	 16141746	 16141805	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25474_PI429285431	0.8941347	A	0.8944587	A	0.999775445529629	0	lncRNA	27004-1_{1..401}	lnc-RPL36AL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RPL36AL-2:1	chr14	 50096473	 50096873	-	lnc-RPL36AL-2	lnc-RPL36AL-2:1	ENSG00000258450.1	RP11-649E7.7	RPL36AL	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70chr14:50086473-50087349"	NA	inner
LNCA_21_P0014400	4.2453284	P	4.7719827	P	0.694162675521407	0	lncRNA	XR_109612	XR_109612	XR_109612	NA	Hs.710271	LOC100128997	uncharacterized LOC100128997	NA	THC2530133	NA	"PREDICTED: Homo sapiens hypothetical LOC100128997, transcript variant 2 (LOC100128997), miscRNA [XR_109612]"	chr20:44034302-44034243	hs|20q13.12	Agilent_HUMAN_G3V2	XR_109612	XR_109612	chr20	 44034243	 44034302	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16914_PI429285431	0.89788496	A	0.9029354	A	0.996505422053662	0	lncRNA	18624-1_{1..2003}	lnc-NPY5R-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NPY5R-1:3	chr4	164040537	164042539	+	lnc-NPY5R-1	lnc-NPY5R-1:3	XLOC_003765	linc-NPY5R-1	NAF1	NA	chr4:164047860-164051790	inter
CUST_17523_PI429285431	1.2897757	A	0.9803839	A	1.23918518388851	0	lncRNA	19247-1_{1..510}	lnc-PAX1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAX1-1:2	chr20	 21596021	 21596530	+	lnc-PAX1-1	lnc-PAX1-1:2	XLOC_013480	linc-PAX1-1	NA	NA	NA	inter
CUST_34521_PI429285431	4.4495907	P	4.4870687	P	0.974356749286359	0	lncRNA	35985-1_{1..1828}	n341400|AK097488|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3870|NULL|4.2182400|-0.2387594	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341400|AK097488|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3870|NULL|4.2182400|-0.2387594	chr13	 99848625	 99850452	-	NA	NA	NA	NA	UBAC2	NA	chr13:99852679-99863174	inner
CUST_23272_PI429285431	1.2857249	A	0.91573745	A	1.29234158851284	0	lncRNA	24843-1_{1..299}	lnc-MUC20-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MUC20-2:1	chr3	195273292	195273590	+	lnc-MUC20-2	lnc-MUC20-2:1	ENSG00000223711.1	AC091633.3	APOD	NA	chr3:195281388-195283479	inter
CUST_7021_PI429285431	2.4565878	A	0.9070725	A	2.92718778396116	0	lncRNA	6968-1_{1..927}	"transcript_id ""ENST00000443965.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443965.1"" | genecode_v17"	chrX	 13284661	 13285587	-	ENSG00000235385.1	ENST00000443965.1	GS1-600G8.5	GS1-600G8.5-002	NA	NA	NA	inter
CUST_25843_PI429285431	1.5099244	A	2.7403204	A	0.426200443651154	0	lncRNA	27364-1_{1..860}	lnc-AC016722.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC016722.2.1-2:1	chr2	 47298261	 47299120	+	lnc-AC016722.2.1-2	lnc-AC016722.2.1-2:1	ENSG00000225187.1	AC073283.7	TTC7A	NA	chr2:47288261-47303275	inner
CUST_13580_PI429285431	1.353097	A	0.9462706	A	1.32576622078604	0	lncRNA	15221-1_{1..251}	lnc-SMPDL3A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMPDL3A-1:1	chr6	123194249	123194499	+	lnc-SMPDL3A-1	lnc-SMPDL3A-1:1	XLOC_005453	linc-CLVS2	NA	NA	NA	inter
CUST_19433_PI429285431	1.74525	A	2.8588307	A	0.462145583133573	0	lncRNA	21093-1_{1..925}	lnc-PCSK1N-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PCSK1N-1:1	chrX	 48595446	 48596370	-	lnc-PCSK1N-1	lnc-PCSK1N-1:1	ENSG00000232828.1	AF196970.3	NA	"hg19_refFlat_SUV39H1:range=chrX:48555176-485659615'pad=0,hg19_refFlat_SUV39H1:range=chrX:48555176-485659615'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.20"	NA	inter
LNCA_21_P0012481	2.562723	A	3.0425844	A	0.717046507499865	0	lncRNA	XR_108533	XR_108533	XR_108533	NA	NA	LOC100505902	uncharacterized LOC100505902	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505902 (LOC100505902), miscRNA [XR_108533]"	chr3:193727846-193727787	hs|3q29	Agilent_HUMAN_G3V2	XR_108533	XR_108533	chr3	193727787	193727846	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014324	4.252283	P	4.2635355	P	0.992230699605231	0	lncRNA	XR_109286	XR_109286	XR_109286	NA	NA	LOC100507110	uncharacterized LOC100507110	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507110 (LOC100507110), miscRNA [XR_109286]"	chr16:31463784-31442799	hs|16p11.2	Agilent_HUMAN_G3V2	XR_109286	XR_109286	chr16	 31442799	 31463784	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26592_PI429285431	0.8889177	A	0.8917268	A	0.998054774662994	0	lncRNA	28095-1_{1..732}	lnc-BTC-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BTC-5:1	chr4	 75514547	 75515278	-	lnc-BTC-5	lnc-BTC-5:1	ENSG00000249942.1	AC142293.3	NA	NA	NA	inter
CUST_34008_PI429285431	1.4080931	A	0.90944725	A	1.41288676858661	0	lncRNA	35545-1_{1..2181}	n340823|AK092525|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3287|NULL|-1.0457000|-0.2079345	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340823|AK092525|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3287|NULL|-1.0457000|-0.2079345	chr6	  4492040	  4494220	+	NA	NA	NA	NA	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30"	NA	inter
CUST_38063_PI429285431	1.4116498	A	1.4878689	A	0.948540250771405	0	lncRNA	39141-1_{1..747}	n377636|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030034||-1.2191000|-0.1939750	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377636|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030034||-1.2191000|-0.1939750	chr7	    46399	    47145	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20181_PI429285431	0.8968213	A	1.3636887	A	0.723533940836037	0	lncRNA	21825-1_{1..646}	lnc-ST7L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ST7L-1:1	chr1	112958457	112959102	-	lnc-ST7L-1	lnc-ST7L-1:1	ENSG00000249913.2	RP4-671G15.2	CTTNBP2NL	"hg19_refFlat_CTTNBP2NL:range=chr1:112958788-1130000345'pad=0,hg19_refFlat_CTTNBP2NL:range=chr1:112958788-1130000345'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50chr1:112948457-112968909"	NA	inner
CUST_3686_PI429285431	3.5184457	P	3.2504253	P	1.20415440809819	0	lncRNA	3654-1_{1..872}	"transcript_id ""ENST00000594037.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594037.1"" | genecode_v17"	chr10	 46937608	 46938479	-	ENSG00000229227.3	ENST00000594037.1	RP11-38L15.2	RP11-38L15.2-003	SYT15	NA	chr10:46955444-46957708	inter
CUST_13954_PI429285431	7.149007	P	7.769764	P	0.650329602163377	0	lncRNA	15599-1_{1..540}	lnc-FAM182B-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM182B-5:1	chr20	 26160090	 26160629	-	lnc-FAM182B-5	lnc-FAM182B-5:1	XLOC_013714	linc-ZNF337-5	NA	NA	NA	inter
LNCA_21_P0006748	2.5693576	A	1.9612381	A	1.52427108214317	0	lncRNA	ENST00000432530	NA	NA	NA	NA	XLOC_008781	NA	ENST00000432530	NA	NA	"BROAD Institute lincRNA (XLOC_008781), lincRNA [TCONS_00017954]"	chr10:38064440-38064381	hs|10p11.1	Agilent_HUMAN_G3V2	ENST00000432530	ENST00000432530	chr10	 38064381	 38064440	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26608_PI429285431	1.8054476	A	0.918205	A	1.849637560517	0	lncRNA	28111-1_{1..599}	lnc-LRRC10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC10-1:1	chr12	 69747523	 69748121	-	lnc-LRRC10-1	lnc-LRRC10-1:1	ENSG00000257764.1	RP11-1143G9.4	LYZ	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-21.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70chr12:69742134-69748013"	NA	inner
LNCA_21_P0006226	2.8019526	A	2.9380498	P	0.909977513276152	0	lncRNA	TCONS_00016158	NA	NA	NA	NA	XLOC_007565	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007565), lincRNA [TCONS_00016158]"	chr9:128508204-128508263	hs|9q33.3	Agilent_HUMAN_G3V2	TCONS_00016158	TCONS_00016158	chr9	128508204	128508263	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15106_PI429285431	6.386009	P	6.4309125	P	0.969354653642075	0	lncRNA	16771-1_{1..1332}	lnc-ST3GAL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ST3GAL1-1:1	chr8	134420934	134422265	-	lnc-ST3GAL1-1	lnc-ST3GAL1-1:1	XLOC_007231	linc-NDRG1	NA	"hg19_refFlat_ST13:range=chr22:41222542-412525445'pad=0,hg19_refFlat_ST13:range=chr22:41222542-412525445'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20"	NA	inter
CUST_42820_PI429285431	0.8963382	A	1.2658772	A	0.774029791396376	0	lncRNA	45829-1_{1..81}	ENST00000516639 ncrna:snoRNA chromosome:GRCh37:1:38349909:38349989:1 gene:ENSG00000252448 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516639 ncrna:snoRNA chromosome:GRCh37:1:38349909:38349989:1 gene:ENSG00000252448 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 38349909	 38349989	+	ENSG00000252448	ENST00000516639	NA	NA	INPP5B	NA	chr1:38339909-38359989	inner
CUST_35269_PI429285431	0.8890382	A	0.8813499	A	1.00534334850453	0	lncRNA	36670-1_{1..2168}	n342279|BC035360|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4771|NULL|2.7039300|-0.1852936	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342279|BC035360|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4771|NULL|2.7039300|-0.1852936	chr15	 83316520	 83318687	+	NA	NA	NA	NA	CPEB1	"hg19_refFlat_SRSF9:range=chr12:120899822-1209074125'pad=0,hg19_refFlat_SRSF9:range=chr12:120899822-1209074125'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40chr15:83306520-83316728"	NA	inner
CUST_20464_PI429285431	1.1289583	A	0.87676775	A	1.19101414716695	0	lncRNA	22108-1_{1..618}	lnc-PLEKHA8-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLEKHA8-3:2	chr7	 30065003	 30065620	+	lnc-PLEKHA8-3	lnc-PLEKHA8-3:2	ENSG00000227014.1	AC007285.6	PLEKHA8	NA	chr7:30067977-30075276	inter
CUST_42009_PI429285431	7.0730057	P	4.993629	P	4.22624586625231	0	lncRNA	43854-1_{1..92}	ENST00000390176 ncrna:miRNA chromosome:GRCh37:9:30774226:30774317:1 gene:ENSG00000211510 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390176 ncrna:miRNA chromosome:GRCh37:9:30774226:30774317:1 gene:ENSG00000211510 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 30774226	 30774317	+	ENSG00000211510	ENST00000390176	NA	NA	NA	NA	NA	inter
LNCA_21_P0010910	0.8774329	A	0.8718344	A	1.00388812370739	0	lncRNA	TCONS_l2_00003843	NA	NA	NA	NA	XLOC_l2_002171	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002171), lincRNA [TCONS_l2_00003843]"	chr10:134309933-134309874	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_l2_00003843	TCONS_l2_00003843	chr10	134309874	134309933	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36087_PI429285431	5.3698025	P	5.967527	P	0.660795377620232	0	lncRNA	37389-1_{1..407}	n344674|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_223|NULL|-1.3338400|-0.2123691	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344674|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_223|NULL|-1.3338400|-0.2123691	chr6	112303900	112304306	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29870_PI429285431	3.950137	P	1.3655256	A	5.99853999081462	0	lncRNA	31633-1_{1..298}	n333868|L31902|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192848|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192848|-1.2196400|-0.3860106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333868|L31902|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192848|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192848|-1.2196400|-0.3860106	chr17	 12045483	 12045780	+	NA	NA	NA	NA	MAP2K4	NA	chr17:12035483-12047051	inner
CUST_41743_PI429285431	9.046576	P	9.162524	P	0.922775752263767	0	lncRNA	43281-1_{1..102}	ENST00000408346 ncrna:miRNA chromosome:GRCh37:11:64136074:64136175:1 gene:ENSG00000221273 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408346 ncrna:miRNA chromosome:GRCh37:11:64136074:64136175:1 gene:ENSG00000221273 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 64136074	 64136175	+	ENSG00000221273	ENST00000408346	NA	NA	RPS6KA4	NA	chr11:64126625-64139687	inner
CUST_29174_PI429285431	0.9001077	A	0.8936897	A	1.00445852839809	0	lncRNA	30918-1_{1..2993}	n326686|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007957|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007957|-0.8626510|-0.2904060	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326686|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007957|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007957|-0.8626510|-0.2904060	chr1	 20559658	 20562650	-	NA	NA	NA	NA	VWA5B1	NA	chr1:20617412-20637862	inner
CUST_32811_PI429285431	1.184229	A	0.89161825	A	1.22485481225454	0	lncRNA	34446-1_{1..478}	n339458|AY063454|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1896|NULL|-1.2331800|-0.3113075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339458|AY063454|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1896|NULL|-1.2331800|-0.3113075	chr21	 31462034	 31462511	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004817	4.6246405	P	4.086015	P	1.45258793259416	0	lncRNA	TCONS_00011638	NA	NA	NA	NA	XLOC_005126	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005126), lincRNA [TCONS_00011638]"	chr6:2249117-2283748	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_00011638	TCONS_00011638	chr6	  2249117	  2283748	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30870_PI429285431	2.0986288	A	1.4639769	A	1.55256309534244	0	lncRNA	32658-1_{1..366}	n336878|AY686920|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332146|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332146|-1.1138800|-0.2044478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336878|AY686920|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332146|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332146|-1.1138800|-0.2044478	chr14	106330426	106330791	+	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106859077	inter
CUST_47300_PI429285431	13.563118	P	12.738668	P	1.77085980293884	0	lncRNA	51366-1_{1..872}	"gi|308081990|ref|NR_003606.2| Homo sapiens ZNFX1 antisense RNA 1 (ZNFX1-AS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|308081990|ref|NR_003606.2| Homo sapiens ZNFX1 antisense RNA 1 (ZNFX1-AS1), transcript variant 3, non-coding RNA"	Chr20	 47894715	 47895586	+	441951	NR_003606.2	NA	NA	NA	NA	NA	inter
CUST_14944_PI429285431	1.936854	A	2.2486367	A	0.805645628965993	0	lncRNA	16608-1_{1..432}	lnc-MAP1LC3B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP1LC3B-4:1	chr16	 87153306	 87153737	+	lnc-MAP1LC3B-4	lnc-MAP1LC3B-4:1	XLOC_011817	linc-MAP1LC3B-4	NA	NA	NA	inter
CUST_21756_PI429285431	3.803109	P	4.416797	P	0.653523944008402	0	lncRNA	23367-1_{1..577}	lnc-RP1L1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP1L1-2:2	chr8	 10375404	 10375980	-	lnc-RP1L1-2	lnc-RP1L1-2:2	ENSG00000253649.1	RP11-981G7.4	PRSS55	NA	chr8:10365404-10385525	inter
LNCA_21_P0014854	3.3074808	P	3.2497058	P	1.0408592545771	0	lncRNA	XR_132737	XR_132737	XR_132737	NA	NA	LOC100652889	uncharacterized LOC100652889	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652889 (LOC100652889), miscRNA [XR_132737]"	chr13:46425729-46425788	hs|13q14.13	Agilent_HUMAN_G3V2	XR_132737	XR_132737	chr13	 46425729	 46425788	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011905	0.9144964	A	0.93262297	A	0.987514221404064	0	lncRNA	TCONS_l2_00014437	NA	NA	NA	NA	XLOC_l2_007898	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007898), lincRNA [TCONS_l2_00014437]"	chr2:10675779-10675720	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_l2_00014437	TCONS_l2_00014437	chr2	 10675720	 10675779	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42243_PI429285431	9.301931	P	9.503831	P	0.869404820551542	0	lncRNA	44378-1_{1..66}	ENST00000387409 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:5826:5891:-1 gene:ENSG00000210144 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000387409 mt_genbank_import:Mt_tRNA chromosome:GRCh37:MT:5826:5891:-1 gene:ENSG00000210144 gene_biotype:Mt_tRNA transcript_biotype:Mt_tRNA	chrMT	     5826	     5891	-	ENSG00000210144	ENST00000387409	NA	NA	NA	NA	NA	Unknown
CUST_33675_PI429285431	1.357085	A	1.464823	A	0.928041997828586	0	lncRNA	35236-1_{1..332}	n340442|Z11802|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2903|NULL|-1.3083400|-0.2907852	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340442|Z11802|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2903|NULL|-1.3083400|-0.2907852	chr5	 42548314	 42548645	+	NA	NA	NA	NA	GHR	NA	chr5:42538314-42558633	inner
LNCA_21_P0004268	3.075901	P	2.049799	A	2.0365143780678	0	lncRNA	TCONS_00010003	NA	NA	NA	NA	XLOC_004439	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004439), lincRNA [TCONS_00010003]"	chr5:77178477-77178536	hs|5q14.1	Agilent_HUMAN_G3V2	TCONS_00010003	TCONS_00010003	chr5	 77178477	 77178536	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13182_PI429285431	0.9105276	A	0.92934644	A	0.987040481313788	0	lncRNA	14809-1_{1..867}	lnc-SERPINI1-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERPINI1-9:1	chr3	164405416	164406282	+	lnc-SERPINI1-9	lnc-SERPINI1-9:1	XLOC_002900	linc-SERPINI1-4	NA	NA	NA	inter
LNCA_21_P0003780	4.7394705	P	5.0357285	P	0.814361916099582	0	lncRNA	TCONS_00008603	NA	NA	NA	NA	XLOC_004108	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004108), lincRNA [TCONS_00008603]"	chr4:145122682-145122623	hs|4q31.21	Agilent_HUMAN_G3V2	TCONS_00008603	TCONS_00008603	chr4	145122623	145122682	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014081	0.9068394	A	0.925435	A	0.987193225975496	0	lncRNA	ENST00000416959	XR_108370	XR_108370	NA	NA	LOC100506824	NA	ENST00000416959	THC2649707	NA	"PREDICTED: Homo sapiens hypothetical LOC100506824 (LOC100506824), miscRNA [XR_108370]"	chr1:21593213-21593365	hs|1p36.12	Agilent_HUMAN_G3V2	ENST00000416959	ENST00000416959	chr1	 21593213	 21593365	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005104	0.9053559	A	0.92352194	A	0.987487204846829	0	lncRNA	THC2699745	NA	NA	NA	NA	XLOC_005136	NA	NA	THC2699745	NA	"BROAD Institute lincRNA (XLOC_005136), lincRNA [TCONS_00012403]"	chr6:003833899-003833958	hs|6p25.2	Agilent_HUMAN_G3V2	THC2699745	THC2699745	chr6	  3833899	  3833958	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011528	0.8930798	A	0.9072825	A	0.990203737609514	0	lncRNA	TCONS_l2_00010614	NA	NA	NA	NA	XLOC_l2_005695	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005695), lincRNA [TCONS_l2_00010614]"	chr17:20303837-20303896	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00010614	TCONS_l2_00010614	chr17	 20303837	 20303896	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36994_PI429285431	0.89451706	A	0.8966935	A	0.998492544105131	0	lncRNA	38137-3_{6001..7742}	n345453|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1002|NULL|-1.3257800|-0.3458925	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n345453|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1002|NULL|-1.3257800|-0.3458925	chr1	 98446837	 98448578	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38318_PI429285431	0.9156351	A	2.824906	A	0.26622705574961	0	lncRNA	39365-3_{6001..7541}	n382014|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uxg.2||0.0945765|-0.3389424	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382014|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uxg.2||0.0945765|-0.3389424	chr13	 40106015	 40107555	-	NA	NA	NA	NA	LHFP	"hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.71;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-62.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50chr13:40090015-40117556"	NA	inner
CUST_48666_PI429285431	11.494771	P	11.636809	P	0.906238068011223	0	lncRNA	52510-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00014709 range=chr2:96490027-96516966 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014709 range=chr2:96490027-96516966 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 96490027	 96493026	-	NA	NA	NA	NA	LOC400986	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50chr2:96516920-96526966"	NA	inter
CUST_22137_PI429285431	3.9789698	P	4.551223	P	0.672565555374387	0	lncRNA	23739-1_{1..266}	lnc-HDDC3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HDDC3-3:1	chr15	 91426505	 91426770	-	lnc-HDDC3-3	lnc-HDDC3-3:1	ENSG00000259260.1	CTD-3094K11.2	FURIN	NA	chr15:91416505-91426687	inner
CUST_46910_PI429285431	4.6224985	P	4.1040797	P	1.43238448780382	0	lncRNA	51028-2_{3001..6000}	"gi|225903381|ref|NR_027418.1| Homo sapiens long intergenic non-protein coding RNA 674 (LINC00674), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225903381|ref|NR_027418.1| Homo sapiens long intergenic non-protein coding RNA 674 (LINC00674), non-coding RNA"	NW_003871088.1	   164566	   167565	+	100499466	NR_027418.1	NA	NA	NA	"hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0,hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0,hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0,hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0,hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0,hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0,hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SH3GL1:range=chr19:4361597-44003655'pad=0,hg19_refFlat_SH3GL1:range=chr19:4361597-44003655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90"	NA	Unknown
CUST_21150_PI429285431	2.2027373	A	1.0560834	A	2.21399797103957	0	lncRNA	22773-1_{1..600}	lnc-IRX3-4:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IRX3-4:6	chr16	 54962682	 54963281	-	lnc-IRX3-4	lnc-IRX3-4:6	ENSG00000245694.4	CRNDE	IRX5	NA	chr16:54965111-54968397	inter
LNCA_21_P0007954	0.87672484	A	0.87677705	A	0.999963811440525	0	lncRNA	ENST00000457672	NA	NA	NA	NA	XLOC_010461	NA	ENST00000457672	NA	NA	"BROAD Institute lincRNA (XLOC_010461), lincRNA [TCONS_00021581]"	chr13:87588984-87589043	hs|13q31.1	Agilent_HUMAN_G3V2	ENST00000457672	ENST00000457672	chr13	 87588984	 87589043	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33326_PI429285431	12.204935	P	12.098375	P	1.07665796184541	0	lncRNA	34908-1_{1..740}	n340042|M73837|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2497|NULL|3.9126000|-0.1120162	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340042|M73837|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2497|NULL|3.9126000|-0.1120162	chr10	 63816932	 63817671	+	NA	NA	NA	NA	ARID5B	NA	chr10:63806932-63856707	inner
CUST_30516_PI429285431	10.951118	P	10.665192	P	1.2191925565611	0	lncRNA	32296-1_{1..341}	n335673|CR614930|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000294125|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000294125|-1.1867400|-0.5685196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335673|CR614930|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000294125|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000294125|-1.1867400|-0.5685196	chr21	 40714243	 40714583	-	NA	NA	NA	NA	HMGN1	NA	chr21:40714241-40721047	inner
CUST_14855_PI429285431	3.3327465	P	3.3905222	P	0.960744222045072	0	lncRNA	16518-1_{1..796}	lnc-MRPL44-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPL44-1:1	chr2	224906435	224907230	+	lnc-MRPL44-1	lnc-MRPL44-1:1	XLOC_001882	linc-KIAA1486-4	SERPINE2	NA	chr2:224896435-224904036	inter
CUST_11620_PI429285431	1.6529442	A	1.5451558	A	1.07757508557585	0	lncRNA	13200-1_{1..3000}	lnc-RUNX2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RUNX2-1:1	chr6	 45543599	 45546598	+	lnc-RUNX2-1	lnc-RUNX2-1:1	XLOC_005302	linc-ENPP4-2	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50"	NA	inter
LNCA_21_P0003453	0.8762197	A	0.87295234	A	1.00226732788105	0	lncRNA	TCONS_00007730	NA	NA	NA	NA	XLOC_003911	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003911), lincRNA [TCONS_00007730]"	chr4:25867154-25867006	hs|4p15.2	Agilent_HUMAN_G3V2	TCONS_00007730	TCONS_00007730	chr4	 25867006	 25867154	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009849	0.8764052	A	0.8714194	A	1.0034618716968	0	lncRNA	THC2663205	NA	NA	NA	NA	XLOC_013551	NA	NA	THC2663205	NA	"BROAD Institute lincRNA (XLOC_013551), lincRNA [TCONS_00027942]"	chr20:046989588-046989647	hs|20q13.13	Agilent_HUMAN_G3V2	THC2663205	THC2663205	chr20	 46989588	 46989647	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38636_PI429285431	5.319942	P	5.488801	P	0.889545927951139	0	lncRNA	39639-1_{1..965}	n383839|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wgc.1||-0.5957710|-0.4199784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383839|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002wgc.1||-0.5957710|-0.4199784	chr20	  2454888	  2455852	-	NA	NA	NA	NA	ZNF343	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10chr20:2462463-2465853"	NA	inter
CUST_16387_PI429285431	0.90941966	A	0.9134127	A	0.997236062310765	0	lncRNA	18085-1_{1..682}	lnc-NMUR2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NMUR2-1:2	chr5	152352638	152353319	-	lnc-NMUR2-1	lnc-NMUR2-1:2	XLOC_005056	linc-NMUR2-1	NA	NA	NA	inter
CUST_25957_PI429285431	0.8927285	A	1.0919636	A	0.871012241377886	0	lncRNA	27477-1_{1..477}	lnc-ATP1A1OS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATP1A1OS-1:1	chr1	116916843	116917319	-	lnc-ATP1A1OS-1	lnc-ATP1A1OS-1:1	ENSG00000229895.1	RP4-655J12.3	ATP1A1	NA	chr1:116915795-116927283	inner
CUST_15139_PI429285431	0.8798749	A	0.8838849	A	0.997224339095723	0	lncRNA	16801-1_{1..777}	lnc-AL358813.2-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL358813.2-2:10	chr1	149591589	149592365	+	lnc-AL358813.2-2	lnc-AL358813.2-2:10	XLOC_000397	linc-FCGR1A-3	NA	NA	NA	inter
LNCA_21_P0001334	7.7375584	P	7.8901997	P	0.899601954081731	0	lncRNA	TCONS_00001017	NA	NA	NA	NA	XLOC_000282	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000282), lincRNA [TCONS_00001017]"	chr1:89501241-89501300	hs|1p22.2	Agilent_HUMAN_G3V2	TCONS_00001017	TCONS_00001017	chr1	 89501241	 89501300	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22417_PI429285431	7.8869905	P	7.802799	P	1.06009348841426	0	lncRNA	24006-1_{1..527}	lnc-FAM82A1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM82A1-2:1	chr2	 38358653	 38359179	+	lnc-FAM82A1-2	lnc-FAM82A1-2:1	ENSG00000232973.3	CYP1B1-AS1	NA	NA	NA	inter
CUST_1188_PI429285431	0.9156153	A	0.93826544	A	0.984422720002488	0	lncRNA	1178-1_{1..695}	"transcript_id ""ENST00000427108.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427108.1"" | genecode_v17"	chr2	186898222	186898916	-	ENSG00000237877.2	ENST00000427108.1	AC097500.2	AC097500.2-003	NA	NA	NA	inter
CUST_50826_PI429285431	10.4601345	P	10.945221	P	0.714454231888831	0	lncRNA	54475-1_{1..713}	hg19_lincRNAsTranscripts_TCONS_l2_00004562 range=chr11:65222726-65224599 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004562 range=chr11:65222726-65224599 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	 65222726	 65223438	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70"	NA	inter
LNCA_21_P0006737	0.9145983	A	1.2672344	A	0.783151810628299	0	lncRNA	ENST00000450174	NA	NA	NA	NA	XLOC_008731	NA	ENST00000450174	NA	NA	"BROAD Institute lincRNA (XLOC_008731), lincRNA [TCONS_00017931]"	chr10:10988932-10988873	hs|10p14	Agilent_HUMAN_G3V2	ENST00000450174	ENST00000450174	chr10	 10988873	 10988932	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42_PI429285431	1.5470203	A	2.2263951	A	0.624435818595283	0	lncRNA	41-1_{1..562}	"transcript_id ""ENST00000534423.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000534423.1"" | genecode_v17"	chr11	119879313	119879874	-	ENSG00000255216.1	ENST00000534423.1	RP11-831A10.1	RP11-831A10.1-001	NA	NA	NA	inter
LNCA_21_P0008171	0.89925766	A	0.915431	A	0.988852098532642	0	lncRNA	TCONS_00022034	NA	NA	NA	NA	XLOC_010632	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010632), lincRNA [TCONS_00022034]"	chr13:60204056-60203997	hs|13q21.2	Agilent_HUMAN_G3V2	TCONS_00022034	TCONS_00022034	chr13	 60203997	 60204056	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11136_PI429285431	2.7094588	A	2.7344697	A	0.982813173064639	0	lncRNA	12693-1_{1..634}	lnc-SPATA19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPATA19-1:1	chr11	133689475	133690108	-	lnc-SPATA19-1	lnc-SPATA19-1:1	XLOC_009608	linc-OPCML	NA	NA	NA	inter
CUST_966_PI429285431	3.74277	P	2.7969794	A	1.92624418299943	0	lncRNA	955-1_{1..796}	"transcript_id ""ENST00000596026.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596026.1"" | genecode_v17"	chr2	 98088578	 98089373	-	ENSG00000230606.5	ENST00000596026.1	AC159540.1	AC159540.1-013	NA	NA	NA	inter
CUST_17896_PI429285431	1.1925435	A	1.2430965	A	0.965566146444997	0	lncRNA	19629-1_{1..230}	lnc-GARS-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GARS-4:4	chr7	 30451947	 30452176	+	lnc-GARS-4	lnc-GARS-4:4	XLOC_006035	linc-GARS-3	NA	NA	NA	inter
CUST_45060_PI429285431	4.0556717	P	2.6268928	A	2.69218751616478	0	lncRNA	49550-1_{1..3000}	"gi|110671311|ref|NR_003102.1| Homo sapiens protection of telomeres 1 homolog (S. pombe) (POT1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|110671311|ref|NR_003102.1| Homo sapiens protection of telomeres 1 homolog (S. pombe) (POT1), transcript variant 2, non-coding RNA"	Chr7	124462440	124465439	-	25913	NR_003102.1	NA	NA	NA	NA	NA	inter
CUST_28881_PI429285431	0.88046557	A	2.2923274	A	0.375826361489989	0	lncRNA	30596-1_{1..290}	n326303|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086169|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086169|-0.7561200|-0.4689354	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326303|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086169|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086169|-0.7561200|-0.4689354	chr1	185679360	185679649	+	NA	NA	NA	NA	HMCN1	NA	chr1:185703683-185715994	inner
CUST_30702_PI429285431	0.88094896	A	0.88485336	A	0.997297334941247	0	lncRNA	32484-1_{1..346}	n336205|X93757|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324707|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324707|2.2441100|-0.0876331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336205|X93757|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324707|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324707|2.2441100|-0.0876331	chr2	 89160710	 89161055	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_693_PI429285431	4.536731	P	3.870777	P	1.58661709665408	0	lncRNA	686-1_{1..758}	"transcript_id ""ENST00000585872.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585872.1"" | genecode_v17"	chr2	  6772454	  6773211	-	ENSG00000236172.2	ENST00000585872.1	AC097517.2	AC097517.2-035	NA	NA	NA	inter
CUST_21479_PI429285431	7.2938824	P	7.2014856	P	1.06613992772622	0	lncRNA	23097-1_{1..342}	lnc-MBLAC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MBLAC1-1:1	chr7	 99737795	 99738136	+	lnc-MBLAC1-1	lnc-MBLAC1-1:1	ENSG00000235077.1	AC073842.19	C7orf59	"hg19_refFlat_RPL7:range=chr8:74203279-742058475'pad=0,hg19_refFlat_RPL7:range=chr8:74203279-742058475'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90chr7:99746530-99748062"	NA	inter
CUST_38140_PI429285431	1.4924924	A	1.184229	A	1.23821633750899	0	lncRNA	39211-1_{1..2162}	n381321|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gwt.1||-0.4330420|-0.2670268	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381321|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001gwt.1||-0.4330420|-0.2670268	chr1	201604354	201606515	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10"	NA	inter
CUST_287_PI429285431	0.89788014	A	0.89309347	A	1.00332337702724	0	lncRNA	278-1_{1..320}	"transcript_id ""ENST00000436262.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436262.1"" | genecode_v17"	chr1	 74175051	 74175370	+	ENSG00000223479.3	ENST00000436262.1	RP4-788P17.1	RP4-788P17.1-002	NA	NA	NA	inter
LNCA_21_P0005676	0.87702596	A	2.8360581	A	0.257200947051073	0	lncRNA	TCONS_00014659	NA	NA	NA	NA	XLOC_006751	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006751), lincRNA [TCONS_00014659]"	chr8:28622623-28622682	hs|8p21.1	Agilent_HUMAN_G3V2	TCONS_00014659	TCONS_00014659	chr8	 28622623	 28622682	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002074	3.199574	P	1.4575793	A	3.34497331127194	0	lncRNA	ENST00000419865	NA	NA	NA	NA	XLOC_002221	NA	ENST00000419865	NA	NA	"BROAD Institute lincRNA (XLOC_002221), lincRNA [TCONS_00003338]"	chr2:99378460-99378401	hs|2q11.2	Agilent_HUMAN_G3V2	ENST00000419865	ENST00000419865	chr2	 99378401	 99378460	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49802_PI429285431	1.5544384	A	1.2735107	A	1.21497590241944	0	lncRNA	53558-1_{1..483}	hg19_lincRNAsTranscripts_TCONS_l2_00025922 range=chr7:63360346-63385550 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025922 range=chr7:63360346-63385550 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 63360346	 63360828	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33964_PI429285431	4.010007	P	3.5769255	P	1.35011425294134	0	lncRNA	35503-1_{1..3000}	n340774|D83785|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3237|NULL|14.2619000|-0.1955349	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340774|D83785|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3237|NULL|14.2619000|-0.1955349	chr5	179159850	179162849	+	NA	NA	NA	NA	MAML1	NA	chr5:179159851-179204287	inner
LNCA_21_P0005540	6.9218106	P	7.112021	P	0.87647788806635	0	lncRNA	TCONS_00014004	NA	NA	NA	NA	XLOC_006644	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006644), lincRNA [TCONS_00014004]"	chr7:149918348-149918289	hs|7q36.1	Agilent_HUMAN_G3V2	TCONS_00014004	TCONS_00014004	chr7	149918289	149918348	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11570_PI429285431	4.9705253	P	5.4272976	P	0.728614544826167	0	lncRNA	13147-1_{1..1847}	lnc-SLC44A3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC44A3-1:2	chr1	 95428535	 95430381	+	lnc-SLC44A3-1	lnc-SLC44A3-1:2	XLOC_000304	linc-TMEM56-3	NA	NA	NA	inter
LNCA_21_P0006307	0.8767076	A	0.87064373	A	1.00421200003607	0	lncRNA	TCONS_00016452	NA	NA	NA	NA	XLOC_007814	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007814), lincRNA [TCONS_00016452]"	chr9:107752435-107752376	hs|9q31.1	Agilent_HUMAN_G3V2	TCONS_00016452	TCONS_00016452	chr9	107752376	107752435	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7251_PI429285431	0.9055775	A	0.9941705	A	0.940439473318026	0	lncRNA	7961-1_{1..333}	"transcript_id ""ENST00000410966.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410966.1"" | genecode_v17"	chr8	 62544239	 62544571	-	ENSG00000222898.1	ENST00000410966.1	RN7SKP97	RN7SKP97-201	ASPH	NA	chr8:62534239-62554571	inner
LNCA_21_P0010077	1.9673741	A	2.2600234	A	0.816401478386304	0	lncRNA	TCONS_00028489	NA	NA	NA	NA	XLOC_013445	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013445), lincRNA [TCONS_00028489]"	chr20:3792353-3792857	hs|20p13	Agilent_HUMAN_G3V2	TCONS_00028489	TCONS_00028489	chr20	  3792353	  3792857	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8820_PI429285431	1.0682846	A	1.8984381	A	0.562469393490162	0	lncRNA	10359-1_{1..528}	lnc-RTN4IP1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RTN4IP1-2:3	chr6	107235134	107235661	-	lnc-RTN4IP1-2	lnc-RTN4IP1-2:3	ENSG00000235142	RP1-60O19.1	NA	NA	NA	inter
CUST_40907_PI429285431	4.6290846	P	5.0999074	P	0.721552963221958	0	lncRNA	41593-1_{1..600}	n410749|NR_038201|lncRNA|Homosapiens||RefGeneNoncode|NR_038201||-0.9495220|-0.2486394	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410749|NR_038201|lncRNA|Homosapiens||RefGeneNoncode|NR_038201||-0.9495220|-0.2486394	chr8	 96281063	 96281662	+	NA	NA	NA	NA	C8orf37	NA	chr8:96271063-96281462	inter
CUST_44835_PI429285431	2.229299	A	2.221184	A	1.00564073876355	0	lncRNA	49364-1_{1..1963}	"gi|399789126|ref|NR_073096.1| Homo sapiens serine active site containing 1 (SERAC1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|399789126|ref|NR_073096.1| Homo sapiens serine active site containing 1 (SERAC1), transcript variant 2, non-coding RNA"	Chr6	158535503	158537465	-	84947	NR_073096.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002660	4.005054	P	1.7290807	A	4.84324270093617	0	lncRNA	TCONS_00005139	NA	NA	NA	NA	XLOC_002079	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002079), lincRNA [TCONS_00005139]"	chr2:45536853-45536794	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00005139	TCONS_00005139	chr2	 45536794	 45536853	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22295_PI429285431	2.0135012	A	2.1463742	A	0.912013446248884	0	lncRNA	23895-1_{1..629}	lnc-TRIM41-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM41-2:4	chr5	180684188	180684816	+	lnc-TRIM41-2	lnc-TRIM41-2:4	ENSG00000233937.2	CTC-338M12.4	TRIM52	"hg19_refFlat_TRIM52:range=chr5:180684415-1806878145'pad=0,hg19_refFlat_TRIM52:range=chr5:180684415-1806878145'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60chr5:180683373-180688119"	NA	inner
CUST_44302_PI429285431	3.265242	P	4.650143	P	0.382915774654026	0	lncRNA	48935-1_{1..735}	"gi|310119328|ref|XR_108524.1| PREDICTED: Homo sapiens uncharacterized LOC100505729 (LOC100505729), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119328|ref|XR_108524.1| PREDICTED: Homo sapiens uncharacterized LOC100505729 (LOC100505729), misc_RNA"	NA	NA	NA	NA	NA	XR_108524.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007567	2.3280287	A	2.654153	A	0.797676510480305	0	lncRNA	TCONS_00020446	NA	NA	NA	NA	XLOC_009779	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009779), lincRNA [TCONS_00020446]"	chr12:58290593-58290652	hs|12q14.1	Agilent_HUMAN_G3V2	TCONS_00020446	TCONS_00020446	chr12	 58290593	 58290652	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31530_PI429285431	0.92524016	A	1.1886084	A	0.833140525465798	0	lncRNA	33287-1_{1..2204}	n338016|AK055631|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|403|NULL|-1.0639800|-0.2383576	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338016|AK055631|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|403|NULL|-1.0639800|-0.2383576	chr1	 75595658	 75597861	-	NA	NA	NA	NA	LHX8	NA	chr1:75594119-75608261	inner
CUST_25146_PI429285431	0.89561015	A	0.9065664	A	0.992434469992514	0	lncRNA	26684-1_{1..2900}	lnc-RYR2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RYR2-3:1	chr1	238698986	238701885	+	lnc-RYR2-3	lnc-RYR2-3:1	ENSG00000231877.1	RP11-177F15.1	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-62.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.91;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70"	NA	inter
CUST_13590_PI429285431	0.9112001	A	0.92328453	A	0.991658694776991	0	lncRNA	15229-2_{3001..3460}	lnc-FOXA1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXA1-2:2	chr14	 38374221	 38374680	-	lnc-FOXA1-2	lnc-FOXA1-2:2	XLOC_010999	linc-FOXA1-1	NA	NA	NA	inter
CUST_9369_PI429285431	0.9001852	A	0.9138446	A	0.990576705551993	0	lncRNA	10870-1_{1..1586}	lnc-FMR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FMR1-1:1	chrX	146035100	146036685	+	lnc-FMR1-1	lnc-FMR1-1:1	XLOC_008081	linc-FMR1	NA	NA	NA	inter
CUST_16382_PI429285431	0.98365104	A	1.9806681	A	0.501034877721812	0	lncRNA	18080-1_{1..445}	lnc-KLHL32-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLHL32-4:3	chr6	 98420402	 98420846	+	lnc-KLHL32-4	lnc-KLHL32-4:3	XLOC_005397	linc-POU3F2-3	NA	NA	NA	inter
CUST_30904_PI429285431	8.31965	P	9.035979	P	0.608644194981568	0	lncRNA	32692-1_{1..582}	n336937|BC094804|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000335105|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000335105|3.7768600|-0.0817236	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336937|BC094804|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000335105|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000335105|3.7768600|-0.0817236	chr19	  3544180	  3544761	-	NA	NA	NA	NA	C19orf28	NA	chr19:3538263-3557571	inner
CUST_9107_PI429285431	1.1517725	A	0.9004388	A	1.19030698629948	0	lncRNA	10628-2_{3001..3334}	lnc-RP1L1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,"	>lnc-RP1L1-5:3	chr8	  9760574	  9760907	-	lnc-RP1L1-5	lnc-RP1L1-5:3	ENSG00000253230	RP11-403C10.2	NA	NA	NA	inter
CUST_51947_PI429285431	6.253259	P	7.3613667	P	0.463902105745539	0	lncRNA	55489-1_{1..2166}	hg19_lincRNAsTranscripts_TCONS_l2_00016534 range=chr20:25754104-25769419 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016534 range=chr20:25754104-25769419 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	 25754104	 25756269	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42349_PI429285431	0.8941614	A	0.9022126	A	0.994434876412753	0	lncRNA	45011-1_{1..95}	ENST00000516650 ncrna:snoRNA chromosome:GRCh37:12:115175509:115175603:1 gene:ENSG00000252459 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516650 ncrna:snoRNA chromosome:GRCh37:12:115175509:115175603:1 gene:ENSG00000252459 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	115175509	115175603	+	ENSG00000252459	ENST00000516650	NA	NA	NA	NA	NA	inter
CUST_33536_PI429285431	1.9211355	A	0.91164297	A	2.01320282864011	0	lncRNA	35104-1_{1..1588}	n340278|AK130566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2739|NULL|-0.8493070|-0.3296552	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340278|AK130566|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2739|NULL|-0.8493070|-0.3296552	chr4	174320011	174321598	+	NA	NA	NA	NA	SCRG1	NA	chr4:174310011-174320617	inner
LNCA_21_P0004529	5.5536246	P	6.3270125	P	0.585041998298368	0	lncRNA	THC2651002	NA	NA	NA	NA	XLOC_004565	NA	NA	THC2651002	NA	"BROAD Institute lincRNA (XLOC_004565), lincRNA [TCONS_00010101]"	chr5:135160343-135160402	hs|5q31.1	Agilent_HUMAN_G3V2	THC2651002	THC2651002	chr5	135160343	135160402	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35324_PI429285431	0.891753	A	0.89350224	A	0.998788253983701	0	lncRNA	36733-1_{1..2248}	n342361|AK094778|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4853|NULL|-1.0101800|-0.3056194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342361|AK094778|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4853|NULL|-1.0101800|-0.3056194	chr1	228309223	228311470	+	NA	NA	NA	NA	GUK1	NA	chr1:228302691-228321472	inter
LNCA_21_P0011139	2.762292	A	2.187476	A	1.48948748314293	0	lncRNA	TCONS_l2_00006790	NA	NA	NA	NA	XLOC_l2_003682	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003682), lincRNA [TCONS_l2_00006790]"	chr13:37364585-37364644	hs|13q13.3	Agilent_HUMAN_G3V2	TCONS_l2_00006790	TCONS_l2_00006790	chr13	 37364585	 37364644	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42877_PI429285431	3.4845476	A	3.3020597	P	1.13483920735768	0	lncRNA	45949-1_{1..131}	ENST00000384126 ncrna:snoRNA chromosome:GRCh37:8:60049931:60050061:-1 gene:ENSG00000206853 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384126 ncrna:snoRNA chromosome:GRCh37:8:60049931:60050061:-1 gene:ENSG00000206853 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	 60049931	 60050061	-	ENSG00000206853	ENST00000384126	NA	NA	NA	NA	NA	inter
CUST_45032_PI429285431	0.9061847	A	0.9174389	A	0.99222953041067	0	lncRNA	49530-1_{1..1334}	"gi|300797008|ref|NR_034142.1| Homo sapiens LHFPL3 antisense RNA 1 (LHFPL3-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300797008|ref|NR_034142.1| Homo sapiens LHFPL3 antisense RNA 1 (LHFPL3-AS1), transcript variant 1, non-coding RNA"	Chr7	104439445	104440778	-	645591	NR_034142.1	NA	NA	NA	NA	NA	inter
CUST_14879_PI429285431	1.7372738	A	1.6091384	A	1.09288030343033	0	lncRNA	16545-1_{1..3000}	lnc-AL360004.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AL360004.1-1:1	chr9	132905523	132908522	-	lnc-AL360004.1-1	lnc-AL360004.1-1:1	XLOC_007870	linc-FNBP1-2	GPR107	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10chr9:132895523-132902448"	NA	inter
CUST_8690_PI429285431	0.9027459	A	0.89491683	A	1.00544144899275	0	lncRNA	10238-1_{1..3000}	lnc-LL22NC03-75H12.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-LL22NC03-75H12.2.1-2:1	chr22	 48025077	 48028076	-	lnc-LL22NC03-75H12.2.1-2	lnc-LL22NC03-75H12.2.1-2:1	ENSG00000205634	RP11-191L9.6	NA	NA	NA	inter
CUST_6234_PI429285431	0.92881817	A	0.8973484	A	1.0220528291247	0	lncRNA	6159-1_{1..217}	"transcript_id ""ENST00000456505.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456505.1"" | genecode_v17"	chr18	 61806687	 61806903	-	ENSG00000179676.6	ENST00000456505.1	LINC00305	LINC00305-003	NA	NA	NA	inter
CUST_39271_PI429285431	0.89604646	A	0.90387297	A	0.994589764983486	0	lncRNA	40243-1_{1..1777}	n386209|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010eda.1||1.1063900|-0.2288463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386209|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010eda.1||1.1063900|-0.2288463	chr19	 24097703	 24099479	+	NA	NA	NA	NA	ZNF726	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-16.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40chr19:24097684-24106517"	NA	inner
CUST_42703_PI429285431	7.287055	P	7.349846	P	0.957410146013318	0	lncRNA	45629-1_{1..72}	ENST00000364370 ncrna:snoRNA chromosome:GRCh37:14:101432366:101432437:1 gene:ENSG00000201240 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364370 ncrna:snoRNA chromosome:GRCh37:14:101432366:101432437:1 gene:ENSG00000201240 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101432366	101432437	+	ENSG00000201240	ENST00000364370	NA	NA	NA	NA	NA	inter
CUST_23942_PI429285431	1.6626508	A	2.2989428	A	0.643364394176882	0	lncRNA	25499-1_{1..560}	lnc-ACACB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACACB-1:1	chr12	109545594	109546153	+	lnc-ACACB-1	lnc-ACACB-1:1	ENSG00000256486.1	RP11-443D10.2	UNG	NA	chr12:109535594-109548798	inner
CUST_46956_PI429285431	10.563345	P	10.887447	P	0.798795438806421	0	lncRNA	51061-1_{1..1802}	"gi|353677962|ref|NR_045351.1| Homo sapiens alveolar soft part sarcoma chromosome region, candidate 1 (ASPSCR1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|353677962|ref|NR_045351.1| Homo sapiens alveolar soft part sarcoma chromosome region, candidate 1 (ASPSCR1), transcript variant 3, non-coding RNA"	Chr17	 79935426	 79937227	+	79058	NR_045351.1	NA	NA	NA	NA	NA	inter
CUST_31342_PI429285431	6.8126063	P	7.012979	P	0.870325697832348	0	lncRNA	33124-1_{1..1764}	n337810|BC042916|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|192|NULL|-0.7701480|-0.2367458	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337810|BC042916|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|192|NULL|-0.7701480|-0.2367458	chr1	 29194086	 29195849	+	NA	NA	NA	NA	OPRD1	NA	chr1:29184086-29190208	inter
LNCA_21_P0008607	2.7556353	A	1.9802828	A	1.71160820501001	0	lncRNA	XR_109174	XR_109174	XR_109174	NA	NA	LOC100507480	uncharacterized LOC100507480	NA	THC2655663	NA	"PREDICTED: Homo sapiens hypothetical LOC100507480 (LOC100507480), miscRNA [XR_109174]"	chr15:36341647-36341706	hs|15q14	Agilent_HUMAN_G3V2	XR_109174	XR_109174	chr15	 36341647	 36341706	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43658_PI429285431	11.469885	P	11.486625	P	0.988463774678136	0	lncRNA	48414-1_{1..1316}	"gi|397138911|ref|XR_158745.1| PREDICTED: Homo sapiens uncharacterized LOC100996595 (LOC100996595), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138911|ref|XR_158745.1| PREDICTED: Homo sapiens uncharacterized LOC100996595 (LOC100996595), misc_RNA"	NA	NA	NA	NA	NA	XR_158745.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005400	0.87522316	A	0.874843	A	1.00026354155314	0	lncRNA	TCONS_00013536	NA	NA	NA	NA	XLOC_006174	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006174), lincRNA [TCONS_00013536]"	chr7:94017995-94018054	hs|7q21.3	Agilent_HUMAN_G3V2	TCONS_00013536	TCONS_00013536	chr7	 94017995	 94018054	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006160	0.8747905	A	1.1731482	A	0.81317755491194	0	lncRNA	TCONS_00016023	NA	NA	NA	NA	XLOC_007419	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007419), lincRNA [TCONS_00016023]"	chr9:82649743-82649802	hs|9q21.31	Agilent_HUMAN_G3V2	TCONS_00016023	TCONS_00016023	chr9	 82649743	 82649802	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32627_PI429285431	6.6030145	P	6.559931	P	1.03031358416724	0	lncRNA	34286-1_{1..1555}	n339251|D87673|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1683|NULL|5.8164400|-0.0886450	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339251|D87673|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1683|NULL|5.8164400|-0.0886450	chr16	 67198715	 67200269	+	NA	NA	NA	NA	NOL3	NA	chr16:67204405-67209643	inner
CUST_32125_PI429285431	9.107249	P	9.349845	P	0.845223040318223	0	lncRNA	33826-1_{1..962}	n338691|D83198|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1109|NULL|3.4684100|-0.2106804	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338691|D83198|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1109|NULL|3.4684100|-0.2106804	chr19	 44010871	 44011832	-	NA	NA	NA	NA	ZNF575	NA	chr19:44037340-44040290	inner
CUST_18940_PI429285431	9.410053	P	9.382199	P	1.01949450545518	0	lncRNA	20631-1_{1..561}	lnc-FAM72C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FAM72C-1:1	chr1	149576917	149577477	-	lnc-FAM72C-1	lnc-FAM72C-1:1	ENSG00000233368	RP11-277L2.3	LOC642441	"hg19_refFlat_PARP8:range=chr5:49962930-501379025'pad=0,hg19_refFlat_PARP8:range=chr5:49962930-501379025'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr1:149576642-149577448"	NA	inter
LNCA_21_P0014374	4.8192606	P	4.837999	P	0.987095517026522	0	lncRNA	XR_109501	XR_109501	XR_109501	NA	NA	LOC100506437	uncharacterized LOC100506437	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506437 (LOC100506437), miscRNA [XR_109501]"	chr19:58143428-58143369	hs|19q13.43	Agilent_HUMAN_G3V2	XR_109501	XR_109501	chr19	 58143369	 58143428	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16344_PI429285431	1.0626265	A	2.0289786	A	0.51179852689497	0	lncRNA	18045-1_{1..3000}	lnc-FAM72B-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM72B-5:2	chr1	121201873	121204872	+	lnc-FAM72B-5	lnc-FAM72B-5:2	XLOC_000375	linc-NBPF9-9	NA	NA	NA	inter
LNCA_21_P0005710	0.9171741	A	2.1530836	A	0.424574755886026	0	lncRNA	TCONS_00014735	NA	NA	NA	NA	XLOC_006820	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006820), lincRNA [TCONS_00014735]"	chr8:64369464-64369523	hs|8q12.3	Agilent_HUMAN_G3V2	TCONS_00014735	TCONS_00014735	chr8	 64369464	 64369523	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007958	1.5753586	A	3.340661	P	0.294165018586969	0	lncRNA	ENST00000443228	NA	NA	NA	NA	XLOC_010471	NA	ENST00000443228	NA	NA	"BROAD Institute lincRNA (XLOC_010471), lincRNA [TCONS_00021586]"	chr13:93710089-93710148	hs|13q31.3	Agilent_HUMAN_G3V2	ENST00000443228	ENST00000443228	chr13	 93710089	 93710148	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10547_PI429285431	0.89701444	A	0.916094	A	0.986862122107311	0	lncRNA	12077-1_{1..742}	lnc-FBXW11-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXW11-2:2	chr5	171163018	171163759	-	lnc-FBXW11-2	lnc-FBXW11-2:2	XLOC_005081	linc-KCNMB1-2	C5orf50	NA	chr5:171153018-171173333	inter
CUST_12066_PI429285431	4.877966	P	5.590789	P	0.610125104994311	0	lncRNA	13654-1_{1..246}	lnc-ATXN10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATXN10-1:1	chr22	 46045519	 46045764	+	lnc-ATXN10-1	lnc-ATXN10-1:1	XLOC_014267	linc-ATXN10	NA	NA	NA	inter
CUST_3619_PI429285431	2.3469207	A	3.7993462	P	0.365406575337106	0	lncRNA	3589-1_{1..344}	"transcript_id ""ENST00000419836.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419836.1"" | genecode_v17"	chr10	  9800746	  9801089	-	ENSG00000228636.1	ENST00000419836.1	RP5-1051H14.2	RP5-1051H14.2-001	NA	NA	NA	inter
CUST_16692_PI429285431	0.9064342	A	0.90895414	A	0.998254835267804	0	lncRNA	18397-1_{1..1972}	lnc-CHD9-5:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CHD9-5:9	chr16	 52313928	 52315899	+	lnc-CHD9-5	lnc-CHD9-5:9	XLOC_011724	linc-CHD9-4	NA	NA	NA	inter
LNCA_21_P0009870	3.65146	P	5.029708	P	0.384685671696594	0	lncRNA	TCONS_00027982	NA	NA	NA	NA	XLOC_013611	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013611), lincRNA [TCONS_00027982]"	chr20:62025666-62025725	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00027982	TCONS_00027982	chr20	 62025666	 62025725	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009912	0.9118663	A	0.93187076	A	0.986229655622365	0	lncRNA	ENST00000426963	NA	NA	NA	NA	XLOC_013799	NA	ENST00000426963	THC2689957	NA	"BROAD Institute lincRNA (XLOC_013799), lincRNA [TCONS_00028067]"	chr20:51474942-51474883	hs|20q13.2	Agilent_HUMAN_G3V2	ENST00000426963	ENST00000426963	chr20	 51474883	 51474942	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41410_PI429285431	7.985238	P	8.380435	P	0.760385538889938	0	lncRNA	42536-1_{1..62}	ENST00000577388 ncrna:miRNA chromosome:GRCh37:11:61276068:61276129:1 gene:ENSG00000266006 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000577388 ncrna:miRNA chromosome:GRCh37:11:61276068:61276129:1 gene:ENSG00000266006 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 61276068	 61276129	+	ENSG00000266006	ENST00000577388	NA	NA	SYT7	NA	chr11:61282785-61286129	inter
LNCA_21_P0010820	0.9074484	A	0.9260439	A	0.987193294402519	0	lncRNA	TCONS_l2_00002984	NA	NA	NA	NA	XLOC_l2_001554	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001554), lincRNA [TCONS_l2_00002984]"	chr10:38172956-38173015	hs|10p11.1	Agilent_HUMAN_G3V2	TCONS_l2_00002984	TCONS_l2_00002984	chr10	 38172956	 38173015	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006356	0.9146619	A	3.2300746	P	0.200905268133874	0	lncRNA	TCONS_00016638	NA	NA	NA	NA	XLOC_007433	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007433), lincRNA [TCONS_00016638]"	chr9:88472837-88474762	hs|9q21.33	Agilent_HUMAN_G3V2	TCONS_00016638	TCONS_00016638	chr9	 88472837	 88474762	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4182_PI429285431	6.249472	P	6.0919304	P	1.1153848651147	0	lncRNA	4141-1_{1..897}	"transcript_id ""ENST00000590328.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590328.1"" | genecode_v17"	chr12	 22939977	 22940873	+	ENSG00000256995.2	ENST00000590328.1	RP11-114G22.1	RP11-114G22.1-006	NA	NA	NA	inter
LNCA_19_P00326558	6.7975287	P	6.6221666	P	1.12924779755755	0	lncRNA	XR_112447	XR_112447	XR_112447	NA	NA	LOC100507979	NA	NA	THC2516942	NA	"PREDICTED: Homo sapiens hypothetical LOC100507979 (LOC100507979), miscRNA [XR_112447]"	chr2:233447910-233447851	hs|2q37.1	Agilent_HUMAN_G3V2	XR_112447	XR_112447	chr2	233447851	233447910	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_341_PI429285431	0.89496917	A	0.9079609	A	0.991035244186066	0	lncRNA	334-1_{1..556}	"transcript_id ""ENST00000600656.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600656.1"" | genecode_v17"	chr1	106130197	106130752	-	ENSG00000230768.2	ENST00000600656.1	RP11-251P6.1	RP11-251P6.1-003	NA	NA	NA	inter
LNCA_21_P0000939	4.014068	P	0.8967391	A	8.67779737572461	0	lncRNA	XR_109346	XR_109346	XR_109346	NA	Hs.586392	LOC100505909	uncharacterized LOC100505909	ENST00000522481	THC2607102	NA	"PREDICTED: Homo sapiens hypothetical LOC100505909 (LOC100505909), miscRNA [XR_109346]"	chr17:81174179-81169121	hs|17q25.3	Agilent_HUMAN_G3V2	XR_109346	XR_109346	chr17	 81169121	 81174179	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007434	4.8532257	P	2.123899	A	6.63146076802749	0	lncRNA	ENST00000528119	NA	NA	NA	NA	XLOC_009097	NA	ENST00000528119	THC2661193	NA	"BROAD Institute lincRNA (XLOC_009097), lincRNA [TCONS_00019876]"	chr11:29644417-29644476	hs|11p14.1	Agilent_HUMAN_G3V2	ENST00000528119	ENST00000528119	chr11	 29644417	 29644476	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00321382	4.8213954	P	4.7030053	P	1.08552285401565	0	lncRNA	XR_108814	XR_108814	XR_108814	NA	Hs.635013	LOC100506860	NA	NA	THC2493890	NA	"PREDICTED: Homo sapiens hypothetical LOC100506860, transcript variant 2 (LOC100506860), miscRNA [XR_108814]"	chr7:130612655-130612714	hs|7q32.3	Agilent_HUMAN_G3V2	XR_108814	XR_108814	chr7	130612655	130612714	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40861_PI429285431	2.2068377	A	2.1679087	A	1.02735087865393	0	lncRNA	41560-1_{1..958}	n410650|NR_037892|lncRNA|Homosapiens||RefGeneNoncode|NR_037892||1.4353500|-0.2256374	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410650|NR_037892|lncRNA|Homosapiens||RefGeneNoncode|NR_037892||1.4353500|-0.2256374	chr1	247108848	247109805	-	NA	NA	NA	NA	ZNF695	NA	chr1:247108849-247171395	inter
CUST_10695_PI429285431	1.5233605	A	2.3392017	A	0.568077158211708	0	lncRNA	12230-1_{1..631}	lnc-PRDM1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRDM1-2:1	chr6	106629113	106629743	+	lnc-PRDM1-2	lnc-PRDM1-2:1	XLOC_005411	linc-AIM1-2	ATG5	NA	chr6:106632352-106639165	inter
CUST_21447_PI429285431	13.7428055	P	14.486966	P	0.597015171831663	0	lncRNA	23066-1_{1..223}	lnc-MYL6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYL6-1:1	chr12	 56553371	 56553593	+	lnc-MYL6-1	lnc-MYL6-1:1	ENSG00000257309.1	RP11-603J24.18	SMARCC2	NA	chr12:56555636-56563431	inner
CUST_18630_PI429285431	4.3846154	P	3.9176595	P	1.38218995538961	0	lncRNA	20335-1_{1..439}	lnc-BHLHB9-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-BHLHB9-1:7	chrX	102160589	102161027	+	lnc-BHLHB9-1	lnc-BHLHB9-1:7	ENSG00000239407	LL0XNC01-237H1.2	NA	NA	NA	inter
CUST_18937_PI429285431	5.9338923	P	6.0649033	P	0.913191287249821	0	lncRNA	20628-2_{3001..3505}	lnc-KLF14-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KLF14-2:1	chr7	130797496	130798000	-	lnc-KLF14-2	lnc-KLF14-2:1	ENSG00000231721	AC058791.2	MKLN1	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70chr7:130794855-130804935"	NA	inner
LNCA_21_P0004474	0.8763721	A	1.4339036	A	0.679463755140603	0	lncRNA	TCONS_00010576	NA	NA	NA	NA	XLOC_005099	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005099), lincRNA [TCONS_00010576]"	chr5:177387742-177387683	hs|5q35.3	Agilent_HUMAN_G3V2	TCONS_00010576	TCONS_00010576	chr5	177387683	177387742	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45951_PI429285431	8.401221	P	8.17929	P	1.16629358794979	0	lncRNA	50247-3_{6001..9000}	"gi|242247112|ref|NR_027946.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant alpha, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|242247112|ref|NR_027946.1| Homo sapiens ELKS/RAB6-interacting/CAST family member 1 (ERC1), transcript variant alpha, non-coding RNA"	Chr12	  1106404	  1109403	+	23085	NR_027946.1	NA	NA	NA	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10"	NA	inter
CUST_39395_PI429285431	3.6122491	P	3.7774954	P	0.891776260462459	0	lncRNA	40358-1_{1..1586}	n386564|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ocg.1||2.0369000|-0.1174679	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386564|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ocg.1||2.0369000|-0.1174679	chr1	 16972068	 16973653	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002539	0.8778667	A	0.8724037	A	1.00379384151387	0	lncRNA	THC2736923	NA	NA	NA	NA	XLOC_002478	NA	NA	THC2736923	NA	"BROAD Institute lincRNA (XLOC_002478), lincRNA [TCONS_00005330]"	chr2:214140898-214140839	hs|2q34	Agilent_HUMAN_G3V2	THC2736923	THC2736923	chr2	214140839	214140898	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006999	0.8782922	A	1.9516807	A	0.475201567456074	0	lncRNA	TCONS_00018523	NA	NA	NA	NA	XLOC_008830	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008830), lincRNA [TCONS_00018523]"	chr10:58872933-58872874	hs|10q21.1	Agilent_HUMAN_G3V2	TCONS_00018523	TCONS_00018523	chr10	 58872874	 58872933	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22146_PI429285431	0.8891548	A	0.8902611	A	0.999233465212156	0	lncRNA	23747-1_{1..2791}	lnc-PPHLN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPHLN1-1:1	chr12	 42858503	 42861293	+	lnc-PPHLN1-1	lnc-PPHLN1-1:1	ENSG00000257225.1	RP11-328C8.4	PRICKLE1	"hg19_refFlat_PRICKLE1:range=chr12:42853611-428663185'pad=0,hg19_refFlat_PRICKLE1:range=chr12:42853611-428663185'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50chr12:42852140-42869930"	NA	inner
LNCA_21_P0005350	5.2096314	P	5.4758363	P	0.831503994920509	0	lncRNA	TCONS_00013316	NA	NA	NA	NA	XLOC_005965	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005965), lincRNA [TCONS_00013316]"	chr7:1660395-1660454	hs|7p22.3	Agilent_HUMAN_G3V2	TCONS_00013316	TCONS_00013316	chr7	  1660395	  1660454	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18205_PI429285431	4.8912225	P	5.2668557	P	0.770767048185173	0	lncRNA	19940-1_{1..845}	lnc-AL669831.1-5:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AL669831.1-5:8	chr1	   788051	   788895	+	lnc-AL669831.1-5	lnc-AL669831.1-5:8	ENSG00000228794	RP11-206L10.11	NA	NA	NA	inter
CUST_36721_PI429285431	0.9014801	A	1.465776	A	0.676285393643168	0	lncRNA	37899-1_{1..3000}	n345206|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_755|NULL|-1.3223500|-0.2328543	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n345206|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_755|NULL|-1.3223500|-0.2328543	chr13	111415060	111418059	+	NA	NA	NA	NA	NA	"hg19_refFlat_RPL21:range=chr13:27827914-278306625'pad=0,hg19_refFlat_RPL21:range=chr13:27827914-278306625'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
CUST_24126_PI429285431	0.88006556	A	0.8751603	A	1.00340585392382	0	lncRNA	25676-1_{1..319}	lnc-C8orf17-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C8orf17-1:2	chr8	140928642	140928960	+	lnc-C8orf17-1	lnc-C8orf17-1:2	ENSG00000253574.1	RP11-284H18.1	TRAPPC9	NA	chr8:140918642-140938864	inner
CUST_19269_PI429285431	1.2228423	A	0.8789837	A	1.26914648959282	0	lncRNA	20937-1_{1..499}	lnc-KAT2B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KAT2B-1:2	chr3	 20227467	 20227965	+	lnc-KAT2B-1	lnc-KAT2B-1:2	ENSG00000237485.1	SGOL1-AS1	SGOL1	"hg19_refFlat_SGOL1:range=chr3:20212196-202255195'pad=0,hg19_refFlat_SGOL1:range=chr3:20212196-202255195'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SGOL1:range=chr3:20202597-202255195'pad=0,hg19_refFlat_SGOL1:range=chr3:20202597-202255195'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chr3:20217467-20227724"	NA	inter
CUST_20105_PI429285431	0.87768346	A	0.87660956	A	1.00074464786987	0	lncRNA	21753-1_{1..440}	lnc-DYTN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DYTN-1:1	chr2	207474469	207474908	-	lnc-DYTN-1	lnc-DYTN-1:1	ENSG00000228577.1	AC010731.2	ADAM23	NA	chr2:207464469-207482685	inner
CUST_21905_PI429285431	3.6373844	P	3.7761154	P	0.908317763767471	0	lncRNA	23514-1_{1..469}	lnc-FZD5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FZD5-1:1	chr2	208734532	208735000	-	lnc-FZD5-1	lnc-FZD5-1:1	ENSG00000225111.1	AC083900.1	PLEKHM3	NA	chr2:208724532-208744639	inner
CUST_30757_PI429285431	10.502918	P	10.433568	P	1.04924384484503	0	lncRNA	32542-1_{1..348}	n336581|Z18364|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326568|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326568|-1.0220500|-0.1497257	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336581|Z18364|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326568|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326568|-1.0220500|-0.1497257	chr20	 35974557	 35974904	+	NA	NA	NA	NA	SRC	NA	chr20:35973088-36021196	inner
CUST_1885_PI429285431	1.4030175	A	1.6205212	A	0.86005230104396	0	lncRNA	1875-1_{1..680}	"transcript_id ""ENST00000514222.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514222.1"" | genecode_v17"	chr4	132694702	132695381	+	ENSG00000251676.1	ENST00000514222.1	RP11-614F17.2	RP11-614F17.2-002	NA	NA	NA	inter
CUST_32534_PI429285431	1.1143814	A	1.5597789	A	0.734381947437859	0	lncRNA	34200-1_{1..452}	n339144|AL080217|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1574|NULL|-1.1376700|-0.4653510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339144|AL080217|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1574|NULL|-1.1376700|-0.4653510	chr2	218823950	218824401	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17699_PI429285431	5.229499	P	5.340328	P	0.926055779717457	0	lncRNA	19428-1_{1..2022}	lnc-PTGES2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTGES2-1:5	chr9	130877353	130879374	-	lnc-PTGES2-1	lnc-PTGES2-1:5	XLOC_007858	linc-NAIF1	SLC25A25	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80chr9:130867353-130871524"	NA	inter
CUST_4067_PI429285431	0.91492665	A	1.3827993	A	0.723029967969534	0	lncRNA	4029-1_{1..409}	"transcript_id ""ENST00000524966.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524966.1"" | genecode_v17"	chr11	105983186	105983594	-	ENSG00000254580.1	ENST00000524966.1	RP11-677I18.4	RP11-677I18.4-001	NA	NA	NA	inter
LNCA_21_P0011513	0.9155033	A	1.3767697	A	0.72634838896926	0	lncRNA	TCONS_l2_00010574	NA	NA	NA	NA	XLOC_l2_005667	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005667), lincRNA [TCONS_l2_00010574]"	chr17:14747466-14747525	hs|17p12	Agilent_HUMAN_G3V2	TCONS_l2_00010574	TCONS_l2_00010574	chr17	 14747466	 14747525	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42926_PI429285431	2.9341707	A	3.3599544	P	0.74443423055503	0	lncRNA	46035-1_{1..110}	ENST00000408876 ncrna:snoRNA chromosome:GRCh37:19:48259110:48259219:1 gene:ENSG00000221803 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408876 ncrna:snoRNA chromosome:GRCh37:19:48259110:48259219:1 gene:ENSG00000221803 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	 48259110	 48259219	+	ENSG00000221803	ENST00000408876	NA	NA	GLTSCR2	NA	chr19:48249110-48260323	inner
CUST_40934_PI429285431	2.415391	A	1.9393982	A	1.39087503030871	0	lncRNA	41618-1_{1..3000}	n410890|NR_038352|lncRNA|Homosapiens||RefGeneNoncode|NR_038352||2.1744600|-0.3788877	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410890|NR_038352|lncRNA|Homosapiens||RefGeneNoncode|NR_038352||2.1744600|-0.3788877	chr5	112312406	112315405	+	NA	NA	NA	NA	MCC	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-10.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.61;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chr5:112357796-112367892"	NA	inner
CUST_11581_PI429285431	1.8788166	A	1.4381055	A	1.35727315841556	0	lncRNA	13160-1_{1..316}	lnc-CCDC140-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC140-3:1	chr2	222601394	222601709	+	lnc-CCDC140-3	lnc-CCDC140-3:1	XLOC_001877	linc-CCDC140-2	NA	NA	NA	inter
LNCA_21_P0008153	0.90925217	A	2.0825586	A	0.443403963088145	0	lncRNA	TCONS_00021987	NA	NA	NA	NA	XLOC_010590	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010590), lincRNA [TCONS_00021987]"	chr13:45462207-45458008	hs|13q14.12	Agilent_HUMAN_G3V2	TCONS_00021987	TCONS_00021987	chr13	 45458008	 45462207	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_644_PI429285431	0.89155495	A	0.90161043	A	0.993054305999418	0	lncRNA	636-1_{1..660}	"transcript_id ""ENST00000454477.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454477.1"" | genecode_v17"	chr2	   545805	   546464	+	ENSG00000225942.1	ENST00000454477.1	AC093326.2	AC093326.2-001	NA	NA	NA	inter
LNCA_21_P0002628	3.6747372	P	2.634766	A	2.05618660599191	0	lncRNA	ENST00000447835	NA	NA	NA	NA	XLOC_001846	NA	ENST00000447835	THC2719699	NA	"BROAD Institute lincRNA (XLOC_001846), lincRNA [TCONS_00005009]"	chr2:216328464-216328523	hs|2q35	Agilent_HUMAN_G3V2	ENST00000447835	ENST00000447835	chr2	216328464	216328523	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16640_PI429285431	3.4148524	P	3.7704759	P	0.781531809850204	0	lncRNA	18341-2_{3001..3509}	lnc-ID2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ID2-1:1	chr2	  8810569	  8811077	+	lnc-ID2-1	lnc-ID2-1:1	XLOC_001333	linc-ID2-1	NA	NA	NA	inter
CUST_37903_PI429285431	3.771649	P	3.5149128	P	1.19477271803066	0	lncRNA	38992-1_{1..822}	n346442|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1992|NULL|-1.6188300|-0.2009995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346442|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1992|NULL|-1.6188300|-0.2009995	chr3	120208601	120209422	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41798_PI429285431	6.8926	P	7.052211	P	0.895266432882864	0	lncRNA	43381-1_{1..144}	ENST00000578526 ncrna:miRNA chromosome:GRCh37:11:106672075:106672218:-1 gene:ENSG00000264542 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578526 ncrna:miRNA chromosome:GRCh37:11:106672075:106672218:-1 gene:ENSG00000264542 gene_biotype:miRNA transcript_biotype:miRNA	chr11	106672075	106672218	-	ENSG00000264542	ENST00000578526	NA	NA	GUCY1A2	NA	chr11:106662075-106682218	inner
LNCA_21_P0007711	0.88932943	A	0.90191054	A	0.991317352876691	0	lncRNA	TCONS_00020806	NA	NA	NA	NA	XLOC_010097	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010097), lincRNA [TCONS_00020806]"	chr12:57477243-57477184	hs|12q13.3	Agilent_HUMAN_G3V2	TCONS_00020806	TCONS_00020806	chr12	 57477184	 57477243	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7557_PI429285431	3.057301	A	0.9668287	A	4.25887474398149	0	lncRNA	9193-1_{1..850}	lnc-GTF2B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2B-1:2	chr1	 89150547	 89151396	-	lnc-GTF2B-1	lnc-GTF2B-1:2	ENSG00000237505	RP11-76N22.2	PKN2	NA	chr1:89149922-89160635	inner
LNCA_19_P00319093	2.6052935	A	1.8448788	A	1.69397748541834	0	lncRNA	BC007399	NA	BC007399	NA	NA	XLOC_010204	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010204), lincRNA [TCONS_00020223]"	chr12:114189949-114189890	hs|12q24.13	Agilent_HUMAN_G3V2	BC007399	BC007399	chr12	114189890	114189949	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9370_PI429285431	2.481671	A	2.8951483	A	0.750811524530021	0	lncRNA	10871-1_{1..266}	lnc-KIAA1467-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1467-1:1	chr12	 13329225	 13329490	+	lnc-KIAA1467-1	lnc-KIAA1467-1:1	XLOC_009670	linc-EMP1-1	NA	NA	NA	inter
CUST_8208_PI429285431	5.6049757	P	5.8168597	P	0.863408978245404	0	lncRNA	9801-2_{3001..4954}	lnc-VKORC1L1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VKORC1L1-2:1	chr7	 66009231	 66011184	+	lnc-VKORC1L1-2	lnc-VKORC1L1-2:1	ENSG00000249705	ENST00000418858	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_TVP23C:range=chr17:15406178-154667625'pad=0,hg19_refFlat_TVP23C:range=chr17:15406178-154667625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-58.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70"	NA	inter
CUST_30249_PI429285431	3.685495	P	3.4196997	P	1.20229864597334	0	lncRNA	32024-1_{1..599}	n335125|AY187236|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250921|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250921|1.3941200|-0.1321614	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335125|AY187236|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250921|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250921|1.3941200|-0.1321614	chr16	 50746105	 50746703	+	NA	NA	NA	NA	NOD2	NA	chr16:50736105-50766987	inner
CUST_7300_PI429285431	0.8989629	A	0.8882654	A	1.00744250071962	0	lncRNA	8339-1_{1..297}	"transcript_id ""ENST00000517077.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517077.1"" | genecode_v17"	chr12	120068895	120069191	-	ENSG00000252886.1	ENST00000517077.1	RN7SKP197	RN7SKP197-201	TMEM233	NA	chr12:120058895-120079191	inner
CUST_26210_PI429285431	0.8801635	A	0.8737028	A	1.00448825818344	0	lncRNA	27719-1_{1..1870}	lnc-NPVF-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NPVF-5:2	chr7	 25702366	 25704235	-	lnc-NPVF-5	lnc-NPVF-5:2	ENSG00000223561.2	AC003090.1	NA	NA	NA	inter
CUST_15852_PI429285431	0.8944895	A	0.88220805	A	1.00854918980738	0	lncRNA	17546-1_{1..3000}	lnc-KLF7-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF7-1:7	chr2	208102812	208105811	-	lnc-KLF7-1	lnc-KLF7-1:7	XLOC_002473	linc-KLF7-2	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60"	NA	inter
LNCA_21_P0013337	0.87715167	A	0.87070906	A	1.0044756629515	0	lncRNA	TCONS_l2_00026766	NA	NA	NA	NA	XLOC_l2_013931	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013931), lincRNA [TCONS_l2_00026766]"	chr7:97574986-97574927	hs|7q21.3	Agilent_HUMAN_G3V2	TCONS_l2_00026766	TCONS_l2_00026766	chr7	 97574927	 97574986	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51730_PI429285431	1.2858303	A	0.90589523	A	1.3012832885079	0	lncRNA	55284-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00011993 range=chr18:15178761-15197762 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011993 range=chr18:15178761-15197762 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 15178761	 15181760	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80"	NA	inter
LNCA_19_P00316035	2.117642	A	1.0871015	A	2.04278943106323	0	lncRNA	TCONS_l2_00012438	NA	NA	NA	NA	XLOC_l2_006675	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006675), lincRNA [TCONS_l2_00012438]"	chr19:28409646-28409705	hs|19q11	Agilent_HUMAN_G3V2	TCONS_l2_00012438	TCONS_l2_00012438	chr19	 28409646	 28409705	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40911_PI429285431	3.09687	P	2.9608266	A	1.0988872744524	0	lncRNA	41597-1_{1..388}	n410754|NR_038206|lncRNA|Homosapiens||RefGeneNoncode|NR_038206||-0.8182380|-0.2204099	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410754|NR_038206|lncRNA|Homosapiens||RefGeneNoncode|NR_038206||-0.8182380|-0.2204099	chr8	 96281063	 96281450	+	NA	NA	NA	NA	C8orf37	NA	chr8:96271063-96281462	inter
CUST_30820_PI429285431	4.2130914	P	4.4752626	P	0.833832089770211	0	lncRNA	32607-1_{1..318}	n336749|Z77835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328126|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328126|-1.0774300|-0.1074014	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336749|Z77835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328126|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328126|-1.0774300|-0.1074014	chr14	 22539276	 22539593	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1910_PI429285431	0.89506155	A	0.89143926	A	1.00251393474868	0	lncRNA	1901-1_{1..498}	"transcript_id ""ENST00000503208.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503208.1"" | genecode_v17"	chr4	138953606	138954103	-	ENSG00000248307.1	ENST00000503208.1	LINC00616	LINC00616-005	NA	NA	NA	inter
CUST_20465_PI429285431	0.8909356	A	0.88024116	A	1.00744036390574	0	lncRNA	22109-1_{1..334}	lnc-SPTBN5-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPTBN5-2:2	chr15	 42064629	 42064962	-	lnc-SPTBN5-2	lnc-SPTBN5-2:2	ENSG00000260814.1	RP11-107F6.3	MAPKBP1	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.00chr15:42066632-42074930"	NA	inter
CUST_50266_PI429285431	2.9734492	A	2.7245007	A	1.18834068400756	0	lncRNA	53989-1_{1..1343}	hg19_lincRNAsTranscripts_TCONS_l2_00028812 range=chr9:69080708-69130929 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028812 range=chr9:69080708-69130929 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69080708	 69082050	+	NA	NA	NA	NA	LOC100507370	NA	chr9:69070708-69089939	inter
CUST_44743_PI429285431	3.163535	A	3.3601766	P	0.872579448480459	0	lncRNA	49293-2_{3001..6000}	"gi|393715073|ref|NR_072996.1| Homo sapiens mitogen-activated protein kinase 13 (MAPK13), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393715073|ref|NR_072996.1| Homo sapiens mitogen-activated protein kinase 13 (MAPK13), transcript variant 2, non-coding RNA"	Chr6	 36101261	 36104260	+	5603	NR_072996.1	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.90"	NA	inter
LNCA_21_P0004099	0.878287	A	0.8745348	A	1.00260421193509	0	lncRNA	ENST00000504182	NA	NA	NA	NA	XLOC_004730	NA	ENST00000504182	NA	NA	"BROAD Institute lincRNA (XLOC_004730), lincRNA [TCONS_00009601]"	chr5:9621548-9621489	hs|5p15.31	Agilent_HUMAN_G3V2	ENST00000504182	ENST00000504182	chr5	  9621489	  9621548	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26495_PI429285431	5.527253	P	5.4919915	P	1.02474254897249	0	lncRNA	28004-1_{1..304}	lnc-C16orf93-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf93-1:2	chr16	 30710202	 30710505	-	lnc-C16orf93-1	lnc-C16orf93-1:2	ENSG00000261840.1	RP11-146F11.1	SRCAP	NA	chr16:30710462-30720282	inter
CUST_41941_PI429285431	0.8952287	A	0.9006858	A	0.996224571440462	0	lncRNA	43698-1_{1..110}	ENST00000384958 ncrna:miRNA chromosome:GRCh37:7:129414745:129414854:-1 gene:ENSG00000207691 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384958 ncrna:miRNA chromosome:GRCh37:7:129414745:129414854:-1 gene:ENSG00000207691 gene_biotype:miRNA transcript_biotype:miRNA	chr7	129414745	129414854	-	ENSG00000207691	ENST00000384958	NA	NA	NA	NA	NA	inter
LNCA_21_P0005778	0.8778881	A	0.874947	A	1.00204069456144	0	lncRNA	TCONS_00014882	NA	NA	NA	NA	XLOC_006952	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006952), lincRNA [TCONS_00014882]"	chr8:144501813-144501872	hs|8q24.3	Agilent_HUMAN_G3V2	TCONS_00014882	TCONS_00014882	chr8	144501813	144501872	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27791_PI429285431	6.4133644	P	6.6818657	P	0.830181506912793	0	lncRNA	29377-1_{1..343}	n325018|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078392|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078392|-1.1520100|-0.1670610	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325018|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078392|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078392|-1.1520100|-0.1670610	chr20	 25072000	 25072342	-	NA	NA	NA	NA	VSX1	NA	chr20:25062000-25062767	inter
CUST_3392_PI429285431	0.8887645	A	0.89757705	A	0.993910224125105	0	lncRNA	3365-1_{1..301}	"transcript_id ""ENST00000588557.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588557.1"" | genecode_v17"	chr9	 37079926	 37080226	+	ENSG00000233137.2	ENST00000588557.1	RP11-220I1.1	RP11-220I1.1-004	NA	NA	NA	inter
CUST_25441_PI429285431	1.6144345	A	1.5868294	A	1.01931863301696	0	lncRNA	26971-1_{1..432}	lnc-PAPOLG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAPOLG-1:1	chr2	 60726791	 60727222	+	lnc-PAPOLG-1	lnc-PAPOLG-1:1	ENSG00000233953.1	AC009970.1	BCL11A	NA	chr2:60716791-60737099	inner
CUST_30598_PI429285431	0.90519047	A	0.9997545	A	0.936555223587867	0	lncRNA	32380-1_{1..396}	n335895|X64240|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322678|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322678|2.4428200|-0.0934480	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335895|X64240|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322678|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322678|2.4428200|-0.0934480	chr14	106330425	106330820	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002927	2.6797836	A	2.9557219	A	0.825912986150623	0	lncRNA	TCONS_00005936	NA	NA	NA	NA	XLOC_002563	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002563), lincRNA [TCONS_00005936]"	chr3:111834-111893	hs|3p26.3	Agilent_HUMAN_G3V2	TCONS_00005936	TCONS_00005936	chr3	   111834	   111893	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26788_PI429285431	7.675868	P	7.8820353	P	0.866837036209197	0	lncRNA	28293-6_{15001..18000}	n323846|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057239|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057239|3.8963400|-0.3476478	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323846|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000057239|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000057239|3.8963400|-0.3476478	chrX	 72972215	 72975214	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_SEPHS1:range=chr10:13361142-133869505'pad=0,hg19_refFlat_SEPHS1:range=chr10:13361142-133869505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_CASP7:range=chr10:115451731-1154892995'pad=0,hg19_refFlat_CASP7:range=chr10:115451731-1154892995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.00;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30"	NA	inter
CUST_15298_PI429285431	0.9098234	A	0.9101236	A	0.999791938864117	0	lncRNA	16975-1_{1..591}	lnc-UTP11L-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UTP11L-3:1	chr1	 38675675	 38676265	+	lnc-UTP11L-3	lnc-UTP11L-3:1	XLOC_000148	linc-AKIRIN1-3	NA	NA	NA	inter
CUST_20789_PI429285431	2.743411	A	2.9720156	A	0.853459974173755	0	lncRNA	22422-1_{1..723}	lnc-DBX1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DBX1-5:1	chr11	 21284084	 21284806	-	lnc-DBX1-5	lnc-DBX1-5:1	ENSG00000255167.1	RP11-670N15.1	NELL1	NA	chr11:21274084-21294116	inner
LNCA_21_P0001343	0.9061175	A	2.0746233	A	0.444881866437845	0	lncRNA	THC2610649	NA	NA	NA	NA	XLOC_000302	NA	NA	THC2610649	NA	"BROAD Institute lincRNA (XLOC_000302), lincRNA [TCONS_00001037]"	chr1:095008486-095008545	hs|1p21.3	Agilent_HUMAN_G3V2	THC2610649	THC2610649	chr1	 95008486	 95008545	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14215_PI429285431	0.9711161	A	1.6183149	A	0.638518887127066	0	lncRNA	15868-1_{1..646}	lnc-TBL1Y-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBL1Y-1:1	chrY	  7388121	  7388766	+	lnc-TBL1Y-1	lnc-TBL1Y-1:1	XLOC_008282	linc-TSPY4-7	NA	NA	NA	inter
CUST_30716_PI429285431	0.9877112	A	1.7318491	A	0.597024524222974	0	lncRNA	32498-1_{1..712}	n336260|Y08267|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325431|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325431|0.9383220|-0.1457252	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336260|Y08267|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325431|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325431|0.9383220|-0.1457252	chr12	 49426710	 49427421	+	NA	NA	NA	NA	MLL2	"hg19_refFlat_MLL2:range=chr12:49415563-494491075'pad=0,hg19_refFlat_MLL2:range=chr12:49415563-494491075'pad=0 3'pad=0 strand=- repeatMasking=none,-106.70chr12:49416710-49437422"	NA	inner
CUST_20562_PI429285431	1.1008441	A	0.89688987	A	1.15185109889451	0	lncRNA	22203-1_{1..912}	lnc-BRCA1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BRCA1-1:2	chr17	 41376187	 41377098	-	lnc-BRCA1-1	lnc-BRCA1-1:2	ENSG00000236383.1	TMEM106A-AS1	TMEM106A	NA	chr17:41366187-41371589	inter
LNCA_21_P0013554	0.89157116	A	0.9051761	A	0.990614099335212	0	lncRNA	ENST00000413145	XR_108927	XR_108927	NA	NA	XLOC_l2_014697	NA	ENST00000413145	THC2656391	NA	"PREDICTED: Homo sapiens hypothetical LOC100287623 (LOC100287623), miscRNA [XR_108927]"	chr9:6669713-6670468	hs|9p24.1	Agilent_HUMAN_G3V2	ENST00000413145	ENST00000413145	chr9	  6669713	  6670468	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26660_PI429285431	0.8933369	A	1.8512522	A	0.514800264530013	0	lncRNA	28160-1_{1..551}	lnc-BEND6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BEND6-1:1	chr6	 56728653	 56729203	+	lnc-BEND6-1	lnc-BEND6-1:1	ENSG00000231441.1	RP11-472M19.2	NA	NA	NA	inter
CUST_29704_PI429285431	0.8998464	A	0.9129389	A	0.99096602433638	0	lncRNA	31466-1_{1..575}	n333370|BC002789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086165_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086165_06|-1.2954800|-0.5236081	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333370|BC002789|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086165_06|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086165_06|-1.2954800|-0.5236081	chr6	  2150890	  2151464	-	NA	NA	NA	NA	GMDS	NA	chr6:2140890-2162826	inner
LNCA_21_P0006087	0.8885042	A	1.9296659	A	0.485936026305645	0	lncRNA	ENST00000436671	NA	NA	NA	NA	XLOC_007769	NA	ENST00000436671	NA	NA	"BROAD Institute lincRNA (XLOC_007769), lincRNA [TCONS_00016826]"	chr9:93147336-93145983	hs|9q22.2	Agilent_HUMAN_G3V2	ENST00000436671	ENST00000436671	chr9	 93145983	 93147336	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010491	4.331086	P	5.7085137	P	0.384904461791382	0	lncRNA	XR_113288	XR_113288	XR_113288	NA	Hs.622871	LOC100507312	uncharacterized LOC100507312	NA	THC2503493	NA	"PREDICTED: Homo sapiens hypothetical LOC100507312, transcript variant 1 (LOC100507312), miscRNA [XR_113288]"	chr17_gl000205_random:36704-36763	NA	Agilent_HUMAN_G3V2	XR_113288	XR_113288	chr17_gl000205_random	    36704	    36763	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21207_PI429285431	2.9077547	A	0.9091091	A	3.99624656796853	0	lncRNA	22832-1_{1..809}	lnc-AGAP8-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AGAP8-2:3	chr10	 51291358	 51292166	-	lnc-AGAP8-2	lnc-AGAP8-2:3	ENSG00000244393.2	RP11-592B15.3	PARG	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70chr10:51281358-51301409"	NA	inner
CUST_3894_PI429285431	0.8858753	A	1.4145355	A	0.693198193548407	0	lncRNA	3863-1_{1..806}	"transcript_id ""ENST00000513853.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513853.1"" | genecode_v17"	chr11	 28724162	 28724967	+	ENSG00000249867.1	ENST00000513853.1	RP11-115J23.1	RP11-115J23.1-001	NA	NA	NA	inter
LNCA_21_P0012463	0.8825285	A	0.8900933	A	0.994770203461875	0	lncRNA	TCONS_l2_00019563	NA	NA	NA	NA	XLOC_l2_010374	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010374), lincRNA [TCONS_l2_00019563]"	chr3:146132963-146113701	hs|3q24	Agilent_HUMAN_G3V2	TCONS_l2_00019563	TCONS_l2_00019563	chr3	146113701	146132963	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013064	2.1255398	A	0.8825787	A	2.36683822457904	0	lncRNA	TCONS_l2_00024638	NA	NA	NA	NA	XLOC_l2_012899	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012899), lincRNA [TCONS_l2_00024638]"	chr6:19323937-19323878	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_l2_00024638	TCONS_l2_00024638	chr6	 19323878	 19323937	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10944_PI429285431	3.4665718	P	3.9417868	P	0.719359578273256	0	lncRNA	12485-1_{1..517}	lnc-SP140-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SP140-3:2	chr2	231032013	231032529	+	lnc-SP140-3	lnc-SP140-3:2	XLOC_001894	linc-SP140-3	SP110	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50chr2:231033634-231042210"	NA	inter
CUST_47104_PI429285431	2.7965522	A	3.1438866	A	0.7860350771971	0	lncRNA	51185-1_{1..2090}	"gi|300116241|ref|NR_033982.1| Homo sapiens uncharacterized LOC400685 (LOC400685), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|300116241|ref|NR_033982.1| Homo sapiens uncharacterized LOC400685 (LOC400685), non-coding RNA"	Chr19	 35307058	 35309147	-	400685	NR_033982.1	NA	NA	NA	NA	NA	inter
CUST_32190_PI429285431	1.0594453	A	1.2362387	A	0.884667114313852	0	lncRNA	33888-1_{1..3000}	n338763|AL713717|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1184|NULL|-0.9991620|-0.4241049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338763|AL713717|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1184|NULL|-0.9991620|-0.4241049	chr13	 72431193	 72434192	-	NA	NA	NA	NA	DACH1	NA	chr13:72421193-72441330	inner
CUST_727_PI429285431	1.0411912	A	0.8806179	A	1.11773121529187	0	lncRNA	720-1_{1..734}	"transcript_id ""ENST00000416534.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416534.1"" | genecode_v17"	chr2	  8026901	  8027634	-	ENSG00000226506.1	ENST00000416534.1	AC007463.2	AC007463.2-001	NA	NA	NA	inter
CUST_8100_PI429285431	3.3073983	A	3.0095203	A	1.22933490543604	0	lncRNA	9705-1_{1..2869}	lnc-MLXIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MLXIP-1:1	chr12	122512858	122515726	+	lnc-MLXIP-1	lnc-MLXIP-1:1	ENSG00000251645	XLOC_009920	MLXIP	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70chr12:122516760-122517172"	NA	inter
CUST_2870_PI429285431	1.5612606	A	1.7616899	A	0.87029155377084	0	lncRNA	2851-1_{1..321}	"transcript_id ""ENST00000426356.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426356.1"" | genecode_v17"	chr7	 68734765	 68735085	-	ENSG00000225718.1	ENST00000426356.1	RP11-3P22.2	RP11-3P22.2-003	NA	NA	NA	inter
CUST_909_PI429285431	7.1527824	P	7.2927136	P	0.90756243459997	0	lncRNA	898-1_{1..732}	"transcript_id ""ENST00000605491.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605491.1"" | genecode_v17"	chr2	 65677651	 65678382	-	ENSG00000234255.4	ENST00000605491.1	AC012370.3	AC012370.3-008	NA	NA	NA	inter
CUST_10705_PI429285431	4.3607244	P	4.456903	P	0.935507678473119	0	lncRNA	12241-1_{1..418}	lnc-ZKSCAN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZKSCAN1-1:1	chr7	 99608999	 99609416	+	lnc-ZKSCAN1-1	lnc-ZKSCAN1-1:1	XLOC_006188	linc-ZKSCAN1-1	ZKSCAN1	NA	chr7:99613219-99619239	inter
CUST_5905_PI429285431	0.91329414	A	0.920653	A	0.994912213791397	0	lncRNA	5836-1_{1..566}	"transcript_id ""ENST00000577089.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577089.1"" | genecode_v17"	chr17	 53545427	 53545992	-	ENSG00000261873.1	ENST00000577089.1	RP11-515E23.1	RP11-515E23.1-001	NA	NA	NA	inter
CUST_38094_PI429285431	7.213907	P	7.993473	P	0.582542010588803	0	lncRNA	39170-1_{1..1410}	n381105|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001but.2||2.1466300|-0.1644404	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381105|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001but.2||2.1466300|-0.1644404	chr1	 32697261	 32698670	-	NA	NA	NA	NA	TMEM234	NA	chr1:32687261-32687926	inter
CUST_30504_PI429285431	9.950594	P	10.246857	P	0.814359093741143	0	lncRNA	32284-1_{1..390}	n335660|CR611449|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000290644|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000290644|-0.7880760|-0.2136148	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335660|CR611449|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000290644|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000290644|-0.7880760|-0.2136148	chr22	 21982378	 21982767	-	NA	NA	NA	NA	CCDC116	NA	chr22:21987086-21991616	inner
CUST_32279_PI429285431	0.89949226	A	0.8849773	A	1.01011178565994	0	lncRNA	33965-1_{1..1755}	n338857|Z97017|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1281|NULL|-0.9469680|-0.3255297	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338857|Z97017|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1281|NULL|-0.9469680|-0.3255297	chr2	155153257	155155011	-	NA	NA	NA	NA	GALNT13	NA	chr2:155143257-155164839	inner
CUST_19520_PI429285431	5.560898	P	5.8270764	P	0.831519268459	0	lncRNA	21176-1_{1..1015}	lnc-HLA-DQA2-10:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HLA-DQA2-10:5	chr6	 32813195	 32814209	+	lnc-HLA-DQA2-10	lnc-HLA-DQA2-10:5	ENSG00000204261.4	XXbac-BPG246D15.8	TAP2	"hg19_refFlat_PSMB8:range=chr6_qbl_hap6:4040843-40442975'pad=0,hg19_refFlat_PSMB8:range=chr6_qbl_hap6:4040843-40442975'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_PSMB8:range=chr6_mcf_hap5:4145613-41490675'pad=0,hg19_refFlat_PSMB8:range=chr6_mcf_hap5:4145613-41490675'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_PSMB8:range=chr6_mann_hap4:4265932-42693865'pad=0,hg19_refFlat_PSMB8:range=chr6_mann_hap4:4265932-42693865'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_TAP1:range=chr6_mann_hap4:4270552-42787895'pad=0,hg19_refFlat_TAP1:range=chr6_mann_hap4:4270552-42787895'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_PSMB8:range=chr6_apd_hap1:4095740-40991945'pad=0,hg19_refFlat_PSMB8:range=chr6_apd_hap1:4095740-40991945'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_PSMB8:range=chr6_dbb_hap3:4090114-40935685'pad=0,hg19_refFlat_PSMB8:range=chr6_dbb_hap3:4090114-40935685'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_TAP1:range=chr6_ssto_hap7:4244129-42523665'pad=0,hg19_refFlat_TAP1:range=chr6_ssto_hap7:4244129-42523665'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_cox_hap2:4257884-42661215'pad=0,hg19_refFlat_TAP1:range=chr6_cox_hap2:4257884-42661215'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_qbl_hap6:4045463-40537005'pad=0,hg19_refFlat_TAP1:range=chr6_qbl_hap6:4045463-40537005'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_apd_hap1:4100360-41085975'pad=0,hg19_refFlat_TAP1:range=chr6_apd_hap1:4100360-41085975'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_PSMB8:range=chr6_ssto_hap7:4239509-42429635'pad=0,hg19_refFlat_PSMB8:range=chr6_ssto_hap7:4239509-42429635'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_TAP1:range=chr6:32813356-328215935'pad=0,hg19_refFlat_TAP1:range=chr6:32813356-328215935'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_mcf_hap5:4150233-41584705'pad=0,hg19_refFlat_TAP1:range=chr6_mcf_hap5:4150233-41584705'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_PSMB8:range=chr6_cox_hap2:4253264-42567185'pad=0,hg19_refFlat_PSMB8:range=chr6_cox_hap2:4253264-42567185'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_TAP1:range=chr6_dbb_hap3:4094734-41029715'pad=0,hg19_refFlat_TAP1:range=chr6_dbb_hap3:4094734-41029715'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_PSMB8:range=chr6:32808736-328121905'pad=0,hg19_refFlat_PSMB8:range=chr6:32808736-328121905'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90chr6:32803195-32806547"	NA	inner
CUST_47554_PI429285431	2.8627577	A	3.16404	P	0.811530768792343	0	lncRNA	51562-1_{1..687}	"gi|336176055|ref|NR_038428.1| Homo sapiens chromosome X open reading frame 28 (CXorf28), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336176055|ref|NR_038428.1| Homo sapiens chromosome X open reading frame 28 (CXorf28), non-coding RNA"	ChrX	  3189861	  3190547	+	100129464	NR_038428.1	NA	NA	NA	NA	NA	inter
CUST_17022_PI429285431	3.3808947	P	4.315878	P	0.52304852443971	0	lncRNA	18733-1_{1..904}	lnc-SLC12A7-1:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC12A7-1:16	chr5	  1042237	  1043140	-	lnc-SLC12A7-1	lnc-SLC12A7-1:16	XLOC_004700	linc-BRD9-1	SLC12A7	NA	chr5:1050489-1052973	inter
CUST_49409_PI429285431	4.316307	P	5.269933	P	0.516333103061482	0	lncRNA	53216-1_{1..2604}	hg19_lincRNAsTranscripts_TCONS_l2_00023254 range=chr5:175570064-175594117 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023254 range=chr5:175570064-175594117 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175570064	175572667	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42026_PI429285431	0.89950866	A	0.9147908	A	0.98946313358469	0	lncRNA	43898-1_{1..77}	ENST00000401172 ncrna:miRNA chromosome:GRCh37:14:23887196:23887272:-1 gene:ENSG00000215991 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401172 ncrna:miRNA chromosome:GRCh37:14:23887196:23887272:-1 gene:ENSG00000215991 gene_biotype:miRNA transcript_biotype:miRNA	chr14	 23887196	 23887272	-	ENSG00000215991	ENST00000401172	NA	NA	MYH6	NA	chr14:23877196-23877486	inner
CUST_1784_PI429285431	0.9002053	A	0.90169156	A	0.998970333542098	0	lncRNA	1770-1_{1..694}	"transcript_id ""ENST00000513836.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513836.1"" | genecode_v17"	chr4	 59850000	 59850693	+	ENSG00000251266.1	ENST00000513836.1	RP11-340A13.2	RP11-340A13.2-001	NA	NA	NA	inter
CUST_16505_PI429285431	2.250786	A	2.4996953	A	0.841532386458514	0	lncRNA	18203-1_{1..505}	lnc-LRRC3C-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRC3C-1:4	chr17	 38095591	 38096095	+	lnc-LRRC3C-1	lnc-LRRC3C-1:4	XLOC_012196	linc-LOC728129-1	LRRC3C	NA	chr17:38097727-38100987	inter
LNCA_21_P0008710	4.68558	P	4.88469	P	0.871087772486478	0	lncRNA	TCONS_00023591	NA	NA	NA	NA	XLOC_011405	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011405), lincRNA [TCONS_00023591]"	chr15:25761667-25761608	hs|15q12	Agilent_HUMAN_G3V2	TCONS_00023591	TCONS_00023591	chr15	 25761608	 25761667	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17271_PI429285431	0.89551866	A	0.9072598	A	0.991894688531195	0	lncRNA	18989-1_{1..1167}	lnc-THBS1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THBS1-1:5	chr15	 39784717	 39785883	+	lnc-THBS1-1	lnc-THBS1-1:5	XLOC_011217	linc-THBS1-1	NA	NA	NA	inter
CUST_17128_PI429285431	4.045824	P	4.531493	P	0.714165823338417	0	lncRNA	18838-1_{1..1453}	lnc-SIX2-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SIX2-3:6	chr2	 45162419	 45163871	-	lnc-SIX2-3	lnc-SIX2-3:6	XLOC_002075	linc-PREPL-1	SIX3	NA	chr2:45169037-45172783	inter
CUST_27048_PI429285431	0.9110518	A	0.9225149	A	0.992085867517905	0	lncRNA	28581-1_{1..1501}	n324158|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051684|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051684|-0.4275980|-0.3589106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324158|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051684|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051684|-0.4275980|-0.3589106	chr9	  6706547	  6708047	+	NA	NA	NA	NA	KDM4C	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50chr9:6696547-6723630"	NA	inter
CUST_50373_PI429285431	13.099694	P	12.5602865	P	1.45337550837795	0	lncRNA	54087-1_{1..1306}	hg19_lincRNAsTranscripts_TCONS_l2_00030305 range=chrX:102094770-102155720 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030305 range=chrX:102094770-102155720 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	102094770	102096075	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006724	1.9162306	A	2.2032962	A	0.81956734069033	0	lncRNA	ENST00000413757	NA	NA	NA	NA	XLOC_008696	NA	ENST00000413757	NA	NA	"BROAD Institute lincRNA (XLOC_008696), lincRNA [TCONS_00017905]"	chr10:3577583-3577524	hs|10p15.2	Agilent_HUMAN_G3V2	ENST00000413757	ENST00000413757	chr10	  3577524	  3577583	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00813076	4.937379	P	5.442956	P	0.704378607875848	0	lncRNA	XR_132650	XR_132650	XR_132650	NA	NA	LOC100506694	uncharacterized LOC100506694	NA	THC2497772	NA	"PREDICTED: Homo sapiens hypothetical LOC100506694, transcript variant 3 (LOC100506694), miscRNA [XR_132650]"	chr19:28297003-28297062	hs|19q11	Agilent_HUMAN_G3V2	XR_132650	XR_132650	chr19	 28297003	 28297062	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26953_PI429285431	0.8992477	A	1.1236202	A	0.855967247558705	0	lncRNA	28474-1_{1..703}	n324034|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053054|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053054|-1.1431600|-0.2919164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324034|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053054|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053054|-1.1431600|-0.2919164	chr9	 93943541	 93944243	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007927	6.6087565	P	6.6162114	P	0.994845984833818	0	lncRNA	ENST00000452222	NA	NA	NA	NA	XLOC_010323	NA	ENST00000452222	THC2765768	NA	"BROAD Institute lincRNA (XLOC_010323), lincRNA [TCONS_00021532]"	chr13:27757072-27757131	hs|13q12.13	Agilent_HUMAN_G3V2	ENST00000452222	ENST00000452222	chr13	 27757072	 27757131	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29599_PI429285431	4.8567758	P	5.1973076	P	0.789750143923215	0	lncRNA	31360-1_{1..292}	n333114|AF331964|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077687|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077687|0.8610160|-0.0830135	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333114|AF331964|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077687|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077687|0.8610160|-0.0830135	chr11	  3147740	  3148031	-	NA	NA	NA	NA	OSBPL5	NA	chr11:3137740-3160490	inner
CUST_8740_PI429285431	0.89980936	A	0.9069972	A	0.995030159696342	0	lncRNA	10283-1_{1..611}	lnc-ARHGAP6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARHGAP6-1:2	chrX	 11129003	 11129613	-	lnc-ARHGAP6-1	lnc-ARHGAP6-1:2	ENSG00000234129	XLOC_008111	HCCS	NA	chrX:11129406-11139258	inter
CUST_929_PI429285431	2.5094202	A	3.4312668	P	0.527832979670751	0	lncRNA	919-1_{1..1008}	"transcript_id ""ENST00000433065.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433065.1"" | genecode_v17"	chr2	 67789199	 67790206	+	ENSG00000224173.1	ENST00000433065.1	AC007422.1	AC007422.1-001	NA	NA	NA	inter
LNCA_21_P0002706	3.0702825	P	2.5756757	A	1.40893670349061	0	lncRNA	ENST00000467198	XR_108503	XR_108503	NA	Hs.518315	XLOC_002859	NA	ENST00000467198	THC2509634	NA	"PREDICTED: Homo sapiens hypothetical LOC100507447 (LOC100507447), miscRNA [XR_108503]"	chr3:147660459-147660518	hs|3q24	Agilent_HUMAN_G3V2	ENST00000467198	ENST00000467198	chr3	147660459	147660518	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4859_PI429285431	1.905807	A	2.5128329	A	0.656548775906512	0	lncRNA	4802-1_{1..552}	"transcript_id ""ENST00000555518.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555518.1"" | genecode_v17"	chr14	 62584863	 62585414	+	ENSG00000186369.5	ENST00000555518.1	LINC00643	LINC00643-003	NA	NA	NA	inter
LNCA_21_P0007612	0.87672186	A	1.3026202	A	0.74437507838002	0	lncRNA	TCONS_00020535	NA	NA	NA	NA	XLOC_009849	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009849), lincRNA [TCONS_00020535]"	chr12:97521369-97521428	hs|12q23.1	Agilent_HUMAN_G3V2	TCONS_00020535	TCONS_00020535	chr12	 97521369	 97521428	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011315	7.3207054	P	7.125125	P	1.14518477877953	0	lncRNA	XR_109180	XR_109180	XR_109180	NA	Hs.530791	LOC100505573	uncharacterized LOC100505573	NA	THC2601518	NA	"PREDICTED: Homo sapiens hypothetical LOC100505573 (LOC100505573), miscRNA [XR_109180]"	chr15:40618784-40618843	hs|15q15.1	Agilent_HUMAN_G3V2	XR_109180	XR_109180	chr15	 40618784	 40618843	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3055_PI429285431	6.9183397	P	7.0069885	P	0.940403100067752	0	lncRNA	3034-1_{1..550}	"transcript_id ""ENST00000521908.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521908.1"" | genecode_v17"	chr8	 29763251	 29763800	+	ENSG00000253604.1	ENST00000521908.1	RP11-489E7.1	RP11-489E7.1-001	NA	NA	NA	inter
LNCA_21_P0003626	0.878041	A	0.87237173	A	1.00393736966933	0	lncRNA	THC2525615	NA	NA	NA	NA	XLOC_003595	NA	NA	THC2525615	NA	"BROAD Institute lincRNA (XLOC_003595), lincRNA [TCONS_00008143]"	chr4:084010025-084010084	hs|4q21.22	Agilent_HUMAN_G3V2	THC2525615	THC2525615	chr4	 84010025	 84010084	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38910_PI429285431	0.89645016	A	0.9006872	A	0.99706741611951	0	lncRNA	39899-1_{1..1608}	n384978|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pod.2||-1.0540800|-0.3459310	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n384978|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pod.2||-1.0540800|-0.3459310	chr6	 92338757	 92340364	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19691_PI429285431	3.2558618	P	3.2446516	P	1.00780058579314	0	lncRNA	21349-1_{1..668}	lnc-TCFL5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCFL5-1:1	chr20	 61436820	 61437487	-	lnc-TCFL5-1	lnc-TCFL5-1:1	ENSG00000229873.1	OGFR-AS1	OGFR	NA	chr20:61436177-61445352	inner
CUST_38479_PI429285431	9.922724	P	10.257254	P	0.793042451246634	0	lncRNA	39497-1_{1..961}	n382982|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002edv.1||2.1467800|-0.2079074	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382982|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002edv.1||2.1467800|-0.2079074	chr16	 34403801	 34404761	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010311	0.87506485	A	1.3110607	A	0.739183341939688	0	lncRNA	ENST00000423274	NA	NA	NA	NA	XLOC_013942	NA	ENST00000423274	THC2708897	NA	"BROAD Institute lincRNA (XLOC_013942), lincRNA [TCONS_00029216]"	chr21:40695086-40695144	hs|21q22.2	Agilent_HUMAN_G3V2	ENST00000423274	ENST00000423274	chr21	 40695086	 40695144	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51817_PI429285431	2.6717072	A	2.6927557	A	0.985516205655178	0	lncRNA	55370-1_{1..682}	hg19_lincRNAsTranscripts_TCONS_l2_00013005 range=chr19:28927600-28957414 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013005 range=chr19:28927600-28957414 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 28927600	 28928281	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9933_PI429285431	0.8969275	A	1.1934167	A	0.814231420475788	0	lncRNA	11456-2_{3001..3285}	lnc-FOXL1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXL1-3:4	chr16	 86774016	 86774300	+	lnc-FOXL1-3	lnc-FOXL1-3:4	XLOC_011816	linc-MAP1LC3B-5	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20"	NA	inter
CUST_20516_PI429285431	1.0793484	A	0.9187788	A	1.11772834871226	0	lncRNA	22158-1_{1..601}	lnc-CORIN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CORIN-2:1	chr4	 47562219	 47562819	-	lnc-CORIN-2	lnc-CORIN-2:1	ENSG00000248254.1	AC092597.3	ATP10D	"hg19_refFlat_ATP10D:range=chr4:47514558-475933985'pad=0,hg19_refFlat_ATP10D:range=chr4:47514558-475933985'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.00chr4:47552219-47572276"	NA	inner
LNCA_21_P0007559	1.5707963	A	0.95311415	A	1.53440800284928	0	lncRNA	TCONS_00020432	NA	NA	NA	NA	XLOC_009762	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009762), lincRNA [TCONS_00020432]"	chr12:54090913-54090972	hs|12q13.13	Agilent_HUMAN_G3V2	TCONS_00020432	TCONS_00020432	chr12	 54090913	 54090972	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17597_PI429285431	5.495471	P	6.102111	P	0.656724416671758	0	lncRNA	19323-1_{1..548}	lnc-TMEM167A-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM167A-4:1	chr5	 82155563	 82156110	-	lnc-TMEM167A-4	lnc-TMEM167A-4:1	XLOC_004908	linc-RPS23-2	NA	NA	NA	inter
CUST_7799_PI429285431	1.1127993	A	1.3562526	A	0.844720928340072	0	lncRNA	9424-1_{1..3000}	lnc-ZNF446-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF446-1:1	chr19	 59018758	 59021757	+	lnc-ZNF446-1	lnc-ZNF446-1:1	ENSG00000249146	ENST00000514271	SLC27A5	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_SLC27A5:range=chr19:59009882-590233225'pad=0,hg19_refFlat_SLC27A5:range=chr19:59009882-590233225'pad=0 3'pad=0 strand=- repeatMasking=none,-105.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.70;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10chr19:59009700-59023432"	NA	inner
CUST_34032_PI429285431	6.213618	P	6.129646	P	1.05993221190498	0	lncRNA	35565-1_{1..1425}	n340850|BC036851|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3314|NULL|-0.8025940|-0.2129233	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340850|BC036851|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3314|NULL|-0.8025940|-0.2129233	chr6	 12295925	 12297349	-	NA	NA	NA	NA	EDN1	"hg19_refFlat_EDN1:range=chr6:12290863-122963005'pad=0,hg19_refFlat_EDN1:range=chr6:12290863-122963005'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50chr6:12290529-12297427"	NA	inner
CUST_45779_PI429285431	5.117411	P	3.9523962	P	2.24235515931494	0	lncRNA	50123-1_{1..3000}	"gi|212549573|ref|NR_015451.1| Homo sapiens long intergenic non-protein coding RNA 294 (LINC00294), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|212549573|ref|NR_015451.1| Homo sapiens long intergenic non-protein coding RNA 294 (LINC00294), non-coding RNA"	Chr11	 33097696	 33100695	+	283267	NR_015451.1	NA	NA	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-24.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PIGC:range=chr1:172410869-1724117625'pad=0,hg19_refFlat_PIGC:range=chr1:172410869-1724117625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20"	NA	inter
CUST_714_PI429285431	0.91348284	A	0.9248365	A	0.992161128049388	0	lncRNA	707-1_{1..620}	"transcript_id ""ENST00000585781.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585781.1"" | genecode_v17"	chr2	  6778478	  6779097	-	ENSG00000236172.2	ENST00000585781.1	AC097517.2	AC097517.2-020	NA	NA	NA	inter
CUST_30151_PI429285431	10.899897	P	10.584022	P	1.24476637992142	0	lncRNA	31925-1_{1..242}	n334819|AJ272440|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246266|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246266|-1.2838600|-0.1767877	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334819|AJ272440|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246266|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246266|-1.2838600|-0.1767877	chr10	  6266129	  6266370	+	NA	NA	NA	NA	PFKFB3	NA	chr10:6256129-6277508	inner
CUST_7377_PI429285431	3.084468	A	3.3982484	A	0.804530823378632	0	lncRNA	9024-1_{1..453}	lnc-MKKS-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MKKS-3:4	chr20	 10199885	 10200337	-	lnc-MKKS-3	lnc-MKKS-3:4	ENSG00000227906	RP5-839B4.7	SNAP25	NA	chr20:10199477-10209963	inner
CUST_28634_PI429285431	0.91337	A	0.90509033	A	1.0057555296978	0	lncRNA	30322-1_{1..389}	n326008|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047661|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047661|-0.2159270|-0.2612678	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326008|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047661|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047661|-0.2159270|-0.2612678	chr10	 38974087	 38974475	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7174_PI429285431	4.9186573	P	4.731134	P	1.13880702671667	0	lncRNA	7354-1_{1..309}	"transcript_id ""ENST00000363838.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000363838.1"" | genecode_v17"	chr2	134353662	134353970	+	ENSG00000200708.1	ENST00000363838.1	RN7SKP93	RN7SKP93-201	NA	NA	NA	inter
LNCA_19_P00801407	2.703812	A	2.5525794	A	1.11051786358716	0	lncRNA	ENST00000506431	XR_110067	XR_110067	NA	Hs.634846	XLOC_005077	0	ENST00000506431	THC2728684	NA	"PREDICTED: Homo sapiens hypothetical LOC100507267 (LOC100507267), miscRNA [XR_110067]"	chr5:169625071-169625012	hs|5q35.1	Agilent_HUMAN_G3V2	ENST00000506431	ENST00000506431	chr5	169625012	169625071	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3660_PI429285431	2.5237129	A	2.9579008	A	0.74011024902052	0	lncRNA	3629-1_{1..712}	"transcript_id ""ENST00000432530.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432530.1"" | genecode_v17"	chr10	 38064299	 38065010	-	ENSG00000226578.1	ENST00000432530.1	RP11-258F22.1	RP11-258F22.1-001	NA	"hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-22.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-19.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.80;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10"	NA	inner
CUST_26598_PI429285431	1.9338131	A	1.2259068	A	1.63343189081877	0	lncRNA	28101-1_{1..740}	lnc-SNRNP200-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNRNP200-1:1	chr2	 96986874	 96987613	-	lnc-SNRNP200-1	lnc-SNRNP200-1:1	ENSG00000230747.1	AC021188.4	ITPRIPL1	NA	chr2:96991062-96994091	inter
CUST_43783_PI429285431	1.5264713	A	1.1623131	A	1.28713038098276	0	lncRNA	48514-1_{1..653}	"gi|310118869|ref|XR_109908.1| PREDICTED: Homo sapiens uncharacterized LOC100506014, transcript variant 2 (LOC100506014), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310118869|ref|XR_109908.1| PREDICTED: Homo sapiens uncharacterized LOC100506014, transcript variant 2 (LOC100506014), misc_RNA"	NA	NA	NA	NA	NA	XR_109908.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011520	1.8414176	A	1.5058897	A	1.26183904691635	0	lncRNA	TCONS_l2_00010601	NA	NA	NA	NA	XLOC_l2_005692	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005692), lincRNA [TCONS_l2_00010601]"	chr17:19495097-19495156	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00010601	TCONS_l2_00010601	chr17	 19495097	 19495156	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10177_PI429285431	1.049169	A	1.0462223	A	1.00204458411441	0	lncRNA	11702-1_{1..745}	lnc-TPTE-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPTE-4:1	chr21	  9540497	  9541241	-	lnc-TPTE-4	lnc-TPTE-4:1	XLOC_013993	linc-S100B-1	NA	NA	NA	inter
CUST_529_PI429285431	0.89561427	A	0.9025656	A	0.995193294570579	0	lncRNA	521-1_{1..850}	"transcript_id ""ENST00000447056.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447056.1"" | genecode_v17"	chr1	193653376	193654225	-	ENSG00000237011.1	ENST00000447056.1	RP11-98G13.1	RP11-98G13.1-001	NA	NA	NA	inter
CUST_42596_PI429285431	3.5555263	P	4.277466	P	0.606281749623166	0	lncRNA	45445-1_{1..88}	ENST00000459124 ncrna:snoRNA chromosome:GRCh37:2:203157772:203157859:1 gene:ENSG00000238317 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459124 ncrna:snoRNA chromosome:GRCh37:2:203157772:203157859:1 gene:ENSG00000238317 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	203157772	203157859	+	ENSG00000238317	ENST00000459124	NA	NA	NOP58	NA	chr2:203147772-203167859	inner
CUST_26740_PI429285431	8.986311	P	8.476673	P	1.42369291877391	0	lncRNA	28233-1_{1..250}	n199030|NULL|H_ACA_box_snoRNA|Homosapiens|H/ACAboxsmallnucleolarRNA(snoRNA)ACA53/SNO|fRNAdbv3.0|FR122257|http://www.ncrna.org/frnadb/detail.html?i_name=FR122257|-1.5906100|-0.3729903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n199030|NULL|H_ACA_box_snoRNA|Homosapiens|H/ACAboxsmallnucleolarRNA(snoRNA)ACA53/SNO|fRNAdbv3.0|FR122257|http://www.ncrna.org/frnadb/detail.html?i_name=FR122257|-1.5906100|-0.3729903	chr12	 98993412	 98993661	+	NA	NA	NA	NA	SLC25A3	NA	chr12:98984291-98995778	inner
CUST_29143_PI429285431	1.9188209	A	2.0865474	A	0.890244486025853	0	lncRNA	30886-1_{1..2741}	n326653|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000011056|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000011056|-0.1784900|-0.2616277	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326653|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000011056|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000011056|-0.1784900|-0.2616277	chr1	 31756622	 31759362	+	NA	NA	NA	NA	ZCCHC17	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-30.04;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SNRNP40:range=chr1:31732919-317695985'pad=0,hg19_refFlat_SNRNP40:range=chr1:31732919-317695985'pad=0 3'pad=0 strand=- repeatMasking=none,-93.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80chr1:31769842-31772433"	NA	inner
CUST_69_PI429201921	5.7896924	P	5.599231	P	1.14112861110992	0	lncRNA	71-1_{1..2017}	TC15002343.hg.1	 TCONS_l2_00008801-XLOC_l2_004773 // Broad TUCP // linc-AKAP13 chr15:+:85788834-85790478 // chr15 // 100 // 100 // 0 // --- // 0///TCONS_l2_00009466-XLOC_l2_004773 // Broad TUCP // linc-AKAP13 chr15:+:85788460-85790410 // chr15 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr15:+:85788460-85790410	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00009466-XLOC_l2_004773	linc-AKAP13	chr15	 85788460	 85790410	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38896_PI429285431	1.0236187	A	0.9144795	A	1.07858449507204	0	lncRNA	39883-1_{1..1999}	n384857|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003npj.2||-0.8938680|-0.2410579	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384857|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003npj.2||-0.8938680|-0.2410579	chr6	 30093186	 30095184	-	NA	NA	NA	NA	TRIM40	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00chr6:30104510-30105185"	NA	inter
LNCA_21_P0004510	3.2209225	P	1.8252485	A	2.63111444052447	0	lncRNA	TCONS_00010714	NA	NA	NA	NA	XLOC_004429	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004429), lincRNA [TCONS_00010714]"	chr5:73618798-73620279	hs|5q13.3	Agilent_HUMAN_G3V2	TCONS_00010714	TCONS_00010714	chr5	 73618798	 73620279	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39000_PI429285431	0.9096983	A	0.91293997	A	0.997755568091602	0	lncRNA	39981-1_{1..2054}	n385293|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vxd.2||0.5955000|-0.2929243	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385293|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003vxd.2||0.5955000|-0.2929243	chr7	141968101	141970154	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19978_PI429285431	3.045777	A	2.7798505	A	1.20240798907821	0	lncRNA	21631-1_{1..361}	lnc-SNRPD1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SNRPD1-3:1	chr18	 18897423	 18897783	+	lnc-SNRPD1-3	lnc-SNRPD1-3:1	ENSG00000265948.1	RP11-296E23.2	GREB1L	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-30.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-65.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50chr18:18887423-18907756"	NA	inner
CUST_32064_PI429285431	4.3124666	P	4.189407	P	1.08904200444395	0	lncRNA	33775-2_{3001..3421}	n338625|BX647623|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1035|NULL|-0.7912280|-0.1858913	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338625|BX647623|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1035|NULL|-0.7912280|-0.1858913	chr2	  1831183	  1831603	+	NA	NA	NA	NA	MYT1L	NA	chr2:1818183-1842439	inner
LNCA_21_P0001298	1.1395075	A	0.87512535	A	1.20112154586684	0	lncRNA	TCONS_00000946	NA	NA	NA	NA	XLOC_000198	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000198), lincRNA [TCONS_00000946]"	chr1:53905532-53905591	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_00000946	TCONS_00000946	chr1	 53905532	 53905591	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3392366	6.199205	P	6.337032	P	0.908887098621786	0	lncRNA	XR_132755	XR_132755	XR_132755	100128366	Hs.532502	LOC100128366	uncharacterized LOC100128366	NA	THC2666659	NA	"PREDICTED: Homo sapiens hypothetical LOC100128366 (LOC100128366), miscRNA [XR_132755]"	chr14:105131315-105131256	hs|14q32.33	Agilent_HUMAN_G3V2	XR_132755	XR_132755	chr14	105131256	105131315	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32705_PI429285431	1.8959248	A	2.1913848	A	0.814812489888909	0	lncRNA	34349-1_{1..1038}	n339336|BC038366|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1768|NULL|-0.5838590|-0.1850875	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339336|BC038366|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1768|NULL|-0.5838590|-0.1850875	chr3	 42812103	 42813140	+	NA	NA	NA	NA	CCDC13	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20chr3:42802103-42814745"	NA	inner
CUST_11055_PI429285431	0.88604945	A	0.90857464	A	0.984507983306323	0	lncRNA	12605-1_{1..520}	lnc-THAP4-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-THAP4-1:4	chr2	242489346	242489865	-	lnc-THAP4-1	lnc-THAP4-1:4	XLOC_002552	linc-STK25	BOK	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70chr2:242498192-242499421"	NA	inter
CUST_15396_PI429285431	0.89198685	A	0.89811355	A	0.995762299668831	0	lncRNA	17081-1_{1..3000}	lnc-CWF19L2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CWF19L2-1:2	chr11	107182073	107185072	-	lnc-CWF19L2-1	lnc-CWF19L2-1:2	XLOC_009544	linc-GUCY1A2	NA	NA	NA	inter
CUST_51834_PI429285431	0.8826395	A	0.8784104	A	1.00293568946262	0	lncRNA	55389-1_{1..1688}	hg19_lincRNAsTranscripts_TCONS_l2_00013086 range=chr19:37176165-37178313 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013086 range=chr19:37176165-37178313 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 37176165	 37177852	-	NA	NA	NA	NA	ZNF567	NA	chr19:37180302-37188313	inter
LNCA_21_P0002554	2.7348	A	3.1631618	P	0.743105112463199	0	lncRNA	TCONS_00004626	NA	NA	NA	NA	XLOC_002540	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002540), lincRNA [TCONS_00004626]"	chr2:240417728-240417669	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_00004626	TCONS_00004626	chr2	240417669	240417728	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31062_PI429285431	5.9713707	P	6.1133757	P	0.90625879740824	0	lncRNA	32852-1_{1..574}	n337290|BC128249|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389775|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389775|3.0140900|-0.1160878	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337290|BC128249|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389775|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389775|3.0140900|-0.1160878	chr15	 88678421	 88678994	-	NA	NA	NA	NA	NTRK3	NA	chr15:88668421-88690719	inner
CUST_22102_PI429285431	2.9145257	A	3.1838949	P	0.829682234489693	0	lncRNA	23707-1_{1..648}	lnc-NCS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NCS1-1:1	chr9	132895265	132895912	+	lnc-NCS1-1	lnc-NCS1-1:1	ENSG00000228932.1	RP11-88G17.2	GPR107	NA	chr9:132885265-132902448	inner
LNCA_21_P0014455	0.9096353	A	0.92829835	A	0.987147073029319	0	lncRNA	XR_109900	XR_109900	XR_109900	NA	NA	LOC100131316	uncharacterized LOC100131316	NA	THC2628041	NA	"PREDICTED: Homo sapiens hypothetical LOC100131316 (LOC100131316), miscRNA [XR_109900]"	chr2:136756403-136762575	hs|2q21.3	Agilent_HUMAN_G3V2	XR_109900	XR_109900	chr2	136756403	136762575	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16163_PI429285431	0.9064928	A	1.0138255	A	0.928302751661065	0	lncRNA	17869-1_{1..348}	lnc-NR4A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR4A2-1:1	chr2	157174822	157175169	-	lnc-NR4A2-1	lnc-NR4A2-1:1	XLOC_002366	linc-RPRM-7	NR4A2	NA	chr2:157180944-157184852	inter
CUST_18950_PI429285431	3.1613455	P	2.1033545	A	2.0820302069474	0	lncRNA	20641-1_{1..2367}	lnc-ITGA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ITGA2-1:1	chr5	 52409689	 52412055	+	lnc-ITGA2-1	lnc-ITGA2-1:1	ENSG00000247796	CTD-2366F13.1	MOCS2	NA	chr5:52399689-52405598	inter
CUST_21760_PI429285431	0.9189513	A	0.923276	A	0.997006834865733	0	lncRNA	23370-1_{1..785}	lnc-BMP2K-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-BMP2K-1:6	chr4	 80229427	 80230211	+	lnc-BMP2K-1	lnc-BMP2K-1:6	ENSG00000249307.1	RP11-438E5.1	NAA11	NA	chr4:80238272-80239909	inter
CUST_31360_PI429285431	0.8899587	A	0.8947926	A	0.996655002853958	0	lncRNA	33140-1_{1..1931}	n337826|BC034325|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|209|NULL|-1.3503000|-0.3083005	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n337826|BC034325|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|209|NULL|-1.3503000|-0.3083005	chr15	 62352717	 62354647	+	NA	NA	NA	NA	VPS13C	NA	chr15:62342717-62352664	inter
CUST_323_PI429201921	0.90742856	A	1.2263995	A	0.80164147658645	0	lncRNA	216-1_{1..3000}	TC0Y000290.hg.1	 TCONS_l2_00031013-XLOC_l2_015918 // Broad TUCP // linc-SRY-2 chrY:-:6126373-6131976 // chrY // 100 // 100 // 0 // --- // 0///TCONS_l2_00031012-XLOC_l2_015918 // Broad TUCP // linc-SRY-2 chrY:-:6124307-6131994 // chrY // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:6124307-6131994	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031012-XLOC_l2_015918	linc-SRY-2	chrY	  6124307	  6131994	-	NA	NA	NA	NA	LOC388630	NA	chr1:48273738-48295909	Unknown
CUST_45168_PI429285431	4.1910543	P	4.4545574	P	0.833062648938339	0	lncRNA	49643-1_{1..1503}	"gi|301895785|ref|NR_003671.2| Homo sapiens chromosome X open reading frame 56 pseudogene (LOC728024), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301895785|ref|NR_003671.2| Homo sapiens chromosome X open reading frame 56 pseudogene (LOC728024), non-coding RNA"	Chr8	 37604072	 37605574	-	728024	NR_003671.2	NA	NA	NA	NA	NA	inter
CUST_22127_PI429285431	6.227671	P	6.570928	P	0.788259741883906	0	lncRNA	23730-1_{1..850}	lnc-PXDN-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PXDN-4:1	chr2	  1350147	  1350996	-	lnc-PXDN-4	lnc-PXDN-4:1	ENSG00000233553.1	AC108462.1	SNTG2	NA	chr2:1340147-1360340	inner
CUST_16465_PI429285431	4.9683456	P	4.5050645	P	1.37867375266439	0	lncRNA	18163-1_{1..469}	lnc-PIK3R1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIK3R1-1:5	chr5	 67494018	 67494486	+	lnc-PIK3R1-1	lnc-PIK3R1-1:5	XLOC_004412	linc-PIK3R1-1	NA	NA	NA	inter
LNCA_21_P0002023	0.8842031	A	0.8930294	A	0.99390075143679	0	lncRNA	ENST00000428280	NA	NA	NA	NA	XLOC_001999	NA	ENST00000428280	NA	NA	"BROAD Institute lincRNA (XLOC_001999), lincRNA [TCONS_00003214]"	chr2:16236933-16236874	hs|2p24.3	Agilent_HUMAN_G3V2	ENST00000428280	ENST00000428280	chr2	 16236874	 16236933	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013599	6.850593	P	6.894874	P	0.969773005031171	0	lncRNA	ENST00000455981	NA	NA	NA	NA	XLOC_l2_015033	NA	ENST00000455981	THC2633710	NA	"BROAD Institute lincRNA (XLOC_l2_015033), lincRNA [TCONS_l2_00029049]"	chr9:132044917-132045213	hs|9q34.11	Agilent_HUMAN_G3V2	ENST00000455981	ENST00000455981	chr9	132044917	132045213	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4429_PI429285431	1.7550521	A	1.466591	A	1.22133680195234	0	lncRNA	4379-1_{1..611}	"transcript_id ""ENST00000605329.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605329.1"" | genecode_v17"	chr12	118813155	118813765	-	ENSG00000270482.1	ENST00000605329.1	RP11-131L12.2	RP11-131L12.2-001	TAOK3	NA	chr12:118803155-118810750	inter
CUST_16292_PI429285431	5.582966	P	5.7683163	P	0.879435514736039	0	lncRNA	17998-1_{1..740}	lnc-OSR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OSR1-1:1	chr2	 19563826	 19564565	-	lnc-OSR1-1	lnc-OSR1-1:1	XLOC_002005	linc-OSR1-1	OSR1	NA	chr2:19553826-19558372	inter
CUST_19357_PI429285431	5.1605034	P	4.8281255	P	1.25908693594826	0	lncRNA	21020-1_{1..422}	lnc-GABPA-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GABPA-4:1	chr21	 27890841	 27891262	+	lnc-GABPA-4	lnc-GABPA-4:1	ENSG00000197934.4	AP001597.1	CYYR1	NA	chr21:27880841-27900912	inner
CUST_42391_PI429285431	5.8288817	P	6.197671	P	0.774432122394176	0	lncRNA	45085-1_{1..134}	ENST00000365189 ncrna:snoRNA chromosome:GRCh37:2:203917008:203917141:-1 gene:ENSG00000202059 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365189 ncrna:snoRNA chromosome:GRCh37:2:203917008:203917141:-1 gene:ENSG00000202059 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	203917008	203917141	-	ENSG00000202059	ENST00000365189	NA	NA	NBEAL1	NA	chr2:203907008-203927141	inner
LNCA_21_P0014544	5.748947	P	5.6746044	P	1.05288115505376	0	lncRNA	XR_110258	XR_110258	XR_110258	NA	Hs.676553	LOC100507437	uncharacterized LOC100507437	NA	THC2577112	NA	"PREDICTED: Homo sapiens hypothetical LOC100507437, transcript variant 2 (LOC100507437), miscRNA [XR_110258]"	chr14:105884118-105884059	hs|14q32.33	Agilent_HUMAN_G3V2	XR_110258	XR_110258	chr14	105884059	105884118	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_274_PI429201921	6.0942297	P	6.193016	P	0.933818257016524	0	lncRNA	196-3_{6001..6660}	TC20001162.hg.1	TCONS_l2_00016200-XLOC_l2_008587 // Broad TUCP // linc-TMEM90B-4 chr20:+:23969935-23976596 // chr20 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr20:+:23969935-23976596	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00016200-XLOC_l2_008587	linc-TMEM90B-4	chr20	 23969935	 23976596	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00315764	12.276703	P	12.0358	P	1.1817320901794	0	lncRNA	XR_110541	XR_110541	XR_110541	NA	Hs.577348	LOC644277	uncharacterized LOC644277	ENST00000528953	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC644277 (LOC644277), miscRNA [XR_110541]"	chr11:111327269-111327328	hs|11q23.1	Agilent_HUMAN_G3V2	XR_110541	XR_110541	chr11	111327269	111327328	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16277_PI429285431	3.256591	P	2.364117	A	1.85635676204817	0	lncRNA	17982-1_{1..294}	lnc-KIDINS220-6:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIDINS220-6:10	chr2	  8431385	  8431678	-	lnc-KIDINS220-6	lnc-KIDINS220-6:10	XLOC_001974	linc-CMPK2-2	NA	NA	NA	inter
CUST_41864_PI429285431	7.786989	P	7.8373575	P	0.96568963640003	0	lncRNA	43523-1_{1..61}	ENST00000584158 ncrna:miRNA chromosome:GRCh37:1:12251770:12251830:1 gene:ENSG00000263676 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584158 ncrna:miRNA chromosome:GRCh37:1:12251770:12251830:1 gene:ENSG00000263676 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 12251770	 12251830	+	ENSG00000263676	ENST00000584158	NA	NA	TNFRSF1B	NA	chr1:12241770-12261830	inner
CUST_25896_PI429285431	0.9060004	A	0.8907474	A	1.01062866109256	0	lncRNA	27415-1_{1..353}	lnc-ANKS6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKS6-1:1	chr9	101634471	101634823	-	lnc-ANKS6-1	lnc-ANKS6-1:1	ENSG00000238264.1	RP11-92C4.3	NA	NA	NA	inter
LNCA_33_P3249736	1.484129	A	0.8744619	A	1.52590706726739	0	lncRNA	ENST00000429274	XR_132593	XR_132593	NA	Hs.370479	NA	NA	ENST00000429274	THC2484463	NA	"PREDICTED: Homo sapiens hypothetical FLJ38723 (FLJ38723), miscRNA [XR_132593]"	chr15:62538708-62538649	hs|15q22.2	Agilent_HUMAN_G3V2	ENST00000429274	ENST00000429274	chr15	 62538649	 62538708	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9200_PI429285431	1.6861567	A	0.88703626	A	1.74003996249495	0	lncRNA	10712-1_{1..554}	lnc-COL25A1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL25A1-1:3	chr4	110354890	110355443	-	lnc-COL25A1-1	lnc-COL25A1-1:3	ENSG00000247950	RP11-264J9.1	SEC24B	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60chr4:110354971-110364920"	NA	inter
CUST_47760_PI429285431	1.6237904	A	2.7965522	A	0.443571383562888	0	lncRNA	51698-2_{3001..6000}	"gi|385137076|ref|NR_047614.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 44, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137076|ref|NR_047614.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 44, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047614.1	NA	NA	NA	NA	NA	inter
CUST_19612_PI429285431	1.2399092	A	0.9150576	A	1.25253559237674	0	lncRNA	21268-1_{1..486}	lnc-GAP43-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-GAP43-6:1	chr3	116442199	116442684	+	lnc-GAP43-6	lnc-GAP43-6:1	ENSG00000243197.1	LSAMP-AS3	NA	NA	NA	inter
CUST_39142_PI429285431	0.9020616	A	0.89421195	A	1.00545579168613	0	lncRNA	40118-1_{1..3000}	n385763|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dqd.2||0.4045140|-0.3008187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385763|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dqd.2||0.4045140|-0.3008187	chrX	 52108073	 52111072	-	NA	NA	NA	NA	XAGE2B	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.21;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60chrX:52113158-52118734"	NA	inter
CUST_31119_PI429285431	1.2409239	A	1.6571574	A	0.749378504251126	0	lncRNA	32914-1_{1..416}	n337415|DQ786327|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393380|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393380|-1.0506300|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337415|DQ786327|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393380|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393380|-1.0506300|-1.0000000	chr1	144521638	144522053	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_325_PI429285431	0.9012229	A	0.9097982	A	0.994073685275271	0	lncRNA	316-1_{1..1691}	"transcript_id ""ENST00000427695.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427695.2"" | genecode_v17"	chr1	 95820945	 95822635	-	ENSG00000237954.2	ENST00000427695.2	RP11-14O19.2	RP11-14O19.2-002	NA	NA	NA	inter
CUST_48917_PI429285431	7.542652	P	7.5911856	P	0.966918635717272	0	lncRNA	52759-1_{1..2902}	hg19_lincRNAsTranscripts_TCONS_l2_00019534 range=chr3:129823872-129830314 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019534 range=chr3:129823872-129830314 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	129823872	129826773	-	NA	NA	NA	NA	ALG1L2	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr3:129813872-129817233"	NA	inter
CUST_51651_PI429285431	5.9544163	P	5.9835978	P	0.979976120501588	0	lncRNA	55220-1_{1..700}	hg19_lincRNAsTranscripts_TCONS_l2_00011391 range=chr17:60308879-60324419 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011391 range=chr17:60308879-60324419 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 60308879	 60309578	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51001_PI429285431	7.8245726	P	7.820425	P	1.00287903372621	0	lncRNA	54645-1_{1..248}	hg19_lincRNAsTranscripts_TCONS_l2_00006751 range=chr13:25154982-25171725 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006751 range=chr13:25154982-25171725 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 25154982	 25155229	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011585	0.91674644	A	0.9463082	A	0.979717856209361	0	lncRNA	BC034720	NA	BC034720	NA	Hs.385535	XLOC_l2_006037	NA	NA	THC2614332	NA	"BROAD Institute lincRNA (XLOC_l2_006037), lincRNA [TCONS_l2_00011165]"	chr17:26257067-26257008	hs|17q11.2	Agilent_HUMAN_G3V2	BC034720	BC034720	chr17	 26257008	 26257067	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38777_PI429285431	7.992849	P	7.5163975	P	1.39131732462118	0	lncRNA	39769-1_{1..2668}	n384410|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ghn.2||3.5020400|-0.1233583	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384410|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ghn.2||3.5020400|-0.1233583	chr4	  3943669	  3946336	-	NA	NA	NA	NA	NA	"hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30;hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30;hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30"	NA	inter
CUST_38143_PI429285431	0.90997595	A	0.91045624	A	0.999667143749586	0	lncRNA	39214-1_{1..2363}	n381330|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hcu.2||-0.9290980|-0.2647034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n381330|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hcu.2||-0.9290980|-0.2647034	chr1	205523400	205525762	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22699_PI429285431	1.563278	A	1.7189448	A	0.897717360512306	0	lncRNA	24282-1_{1..1715}	lnc-NME4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-NME4-1:1	chr16	   441767	   443481	+	lnc-NME4-1	lnc-NME4-1:1	ENSG00000236829.4	Z97634.5	DECR2	NA	chr16:451858-452960	inter
LNCA_21_P0007009	2.183414	A	3.0193727	A	0.560210644005636	0	lncRNA	TCONS_00018569	NA	NA	NA	NA	XLOC_008895	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008895), lincRNA [TCONS_00018569]"	chr10:89832705-89832646	hs|10q23.31	Agilent_HUMAN_G3V2	TCONS_00018569	TCONS_00018569	chr10	 89832646	 89832705	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20814_PI429285431	7.3108716	P	7.0748405	P	1.17774817789431	0	lncRNA	22445-1_{1..893}	lnc-CTD-2215E18.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2215E18.1.1-1:1	chr5	 96772257	 96773149	+	lnc-CTD-2215E18.1.1-1	lnc-CTD-2215E18.1.1-1:1	ENSG00000251513.1	RP11-155G15.2	NA	NA	NA	inter
CUST_31364_PI429285431	0.9039874	A	0.9095496	A	0.996151999354344	0	lncRNA	33143-2_{3001..4957}	n337830|BX537613|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|213|NULL|-1.1625700|-0.3864746	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337830|BX537613|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|213|NULL|-1.1625700|-0.3864746	chrX	110370492	110372448	+	NA	NA	NA	NA	PAK3	NA	chrX:110357492-110382431	inner
LNCA_21_P0003031	0.9106301	A	0.9295128	A	0.986996791546841	0	lncRNA	TCONS_00006219	NA	NA	NA	NA	XLOC_002811	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002811), lincRNA [TCONS_00006219]"	chr3:128775417-128775476	hs|3q21.3	Agilent_HUMAN_G3V2	TCONS_00006219	TCONS_00006219	chr3	128775417	128775476	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3788_PI429285431	1.7717665	A	1.3250629	A	1.36292256767742	0	lncRNA	3756-1_{1..477}	"transcript_id ""ENST00000426752.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426752.2"" | genecode_v17"	chr10	107944143	107944619	+	ENSG00000229775.2	ENST00000426752.2	RP11-298H24.1	RP11-298H24.1-003	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00"	NA	inter
LNCA_19_P00327406	0.901201	A	1.431304	A	0.692505291457227	0	lncRNA	TCONS_00014970	NA	NA	NA	NA	XLOC_007052	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007052), lincRNA [TCONS_00014970]"	chr8:37183739-37183680	hs|8p11.23	Agilent_HUMAN_G3V2	TCONS_00014970	TCONS_00014970	chr8	 37183680	 37183739	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41006_PI429285431	0.9079609	A	1.6483058	A	0.598596230918947	0	lncRNA	41668-3_{6001..8336}	n411552|NR_040023|lncRNA|Homosapiens||RefGeneNoncode|NR_040023||1.2811500|-0.2560209	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n411552|NR_040023|lncRNA|Homosapiens||RefGeneNoncode|NR_040023||1.2811500|-0.2560209	chr16	  2714389	  2716724	-	NA	NA	NA	NA	KCTD5	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr16:2732495-2733440"	NA	inter
CUST_19784_PI429285431	0.90422446	A	0.9046607	A	0.999697667185731	0	lncRNA	21442-1_{1..692}	lnc-KBTBD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KBTBD3-1:1	chr11	105972379	105973070	-	lnc-KBTBD3-1	lnc-KBTBD3-1:1	ENSG00000254433.1	RP11-677I18.3	AASDHPPT	"hg19_refFlat_AASDHPPT:range=chr11:105948438-1059676345'pad=0,hg19_refFlat_AASDHPPT:range=chr11:105948438-1059676345'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90chr11:105962379-105969419"	NA	inter
LNCA_21_P0009163	3.127348	P	3.838892	P	0.610666242236276	0	lncRNA	ENST00000456235	NA	NA	NA	NA	XLOC_012142	NA	ENST00000456235	NA	NA	"BROAD Institute lincRNA (XLOC_012142), lincRNA [TCONS_00025162]"	chr17:20993828-20993887	hs|17p11.2	Agilent_HUMAN_G3V2	ENST00000456235	ENST00000456235	chr17	 20993828	 20993887	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15917_PI429285431	1.0855209	A	0.89890623	A	1.13809001555614	0	lncRNA	17612-1_{1..1758}	lnc-ACSL1-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACSL1-2:10	chr4	185820461	185822218	-	lnc-ACSL1-2	lnc-ACSL1-2:10	XLOC_004209	linc-ACSL1-2	NA	NA	NA	inter
CUST_11818_PI429285431	5.1201887	P	5.2811146	P	0.894450841571264	0	lncRNA	13400-1_{1..293}	lnc-KLF4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF4-2:1	chr9	110109817	110110109	-	lnc-KLF4-2	lnc-KLF4-2:1	XLOC_007822	linc-ABCA1-10	NA	NA	NA	inter
CUST_27223_PI429285431	0.89051414	A	0.8943324	A	0.997356883047193	0	lncRNA	28767-1_{1..2293}	n324357|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042494|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042494|-0.9338820|-0.4262059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324357|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042494|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042494|-0.9338820|-0.4262059	chr6	142889284	142891576	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35657_PI429285431	6.056629	P	6.2905893	P	0.850297558182058	0	lncRNA	37078-1_{1..1444}	n342815|CR606111|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5318|NULL|7.7098900|-0.1601992	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342815|CR606111|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5318|NULL|7.7098900|-0.1601992	chr7	 76026846	 76028289	+	NA	NA	NA	NA	SRCRB4D	"hg19_refFlat_SRCRB4D:range=chr7:76019376-760337565'pad=0,hg19_refFlat_SRCRB4D:range=chr7:76019376-760337565'pad=0 3'pad=0 strand=- repeatMasking=none,-105.50chr7:76018646-76039012"	NA	inner
CUST_8634_PI429285431	0.8769131	A	0.8776804	A	0.999468289576471	0	lncRNA	10186-1_{1..1770}	lnc-VSIG10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VSIG10-1:1	chr12	118613267	118615036	-	lnc-VSIG10-1	lnc-VSIG10-1:1	ENSG00000249477	ENST00000514257	TAOK3	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90chr12:118603267-118624556"	NA	inner
LNCA_21_P0001505	0.8771459	A	0.87631094	A	1.00057891767807	0	lncRNA	TCONS_00001496	NA	NA	NA	NA	XLOC_000835	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000835), lincRNA [TCONS_00001496]"	chr1:53798391-53798332	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_00001496	TCONS_00001496	chr1	 53798332	 53798391	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41261_PI429285431	0.89516515	A	0.8862509	A	1.00619801595589	0	lncRNA	42223-1_{1..90}	ENST00000385211 ncrna:miRNA chromosome:GRCh37:19:54240099:54240188:1 gene:ENSG00000207946 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385211 ncrna:miRNA chromosome:GRCh37:19:54240099:54240188:1 gene:ENSG00000207946 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54240099	 54240188	+	ENSG00000207946	ENST00000385211	NA	NA	NA	NA	NA	inter
CUST_823_PI429285431	9.99698	P	10.008738	P	0.991883096859875	0	lncRNA	816-1_{1..677}	"transcript_id ""ENST00000442026.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442026.1"" | genecode_v17"	chr2	 33931975	 33932651	+	ENSG00000203386.2	ENST00000442026.1	AC009499.1	AC009499.1-001	NA	NA	NA	inter
CUST_34535_PI429285431	1.1193774	A	1.320279	A	0.87000669008519	0	lncRNA	35997-1_{1..3000}	n341415|BX647732|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3885|NULL|-0.5537880|-0.3082556	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341415|BX647732|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3885|NULL|-0.5537880|-0.3082556	chr8	 10713594	 10716593	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1246_PI429285431	1.6530924	A	1.632012	A	1.0147190943194	0	lncRNA	1238-1_{1..260}	"transcript_id ""ENST00000600415.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600415.1"" | genecode_v17"	chr2	219840321	219840580	+	ENSG00000236445.2	ENST00000600415.1	LINC00608	LINC00608-004	FEV	NA	chr2:219845809-219850379	inter
LNCA_21_P0009471	1.4502023	A	4.291828	P	0.139503604107042	0	lncRNA	TCONS_00026309	NA	NA	NA	NA	XLOC_012654	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012654), lincRNA [TCONS_00026309]"	chr18:27227249-27227308	hs|18q12.1	Agilent_HUMAN_G3V2	TCONS_00026309	TCONS_00026309	chr18	 27227249	 27227308	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_369_PI429201921	3.516882	P	2.9896994	A	1.44111213694931	0	lncRNA	235-3_{6001..8967}	TC22001079.hg.1	TCONS_l2_00018250-XLOC_l2_009363 // Broad TUCP // linc-FBXO7 chr22:+:32772650-32780330 // chr22 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00018251-XLOC_l2_009363 // Broad TUCP // linc-FBXO7 chr22:+:32779772-32781618 // chr22 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr22:+:32772650-32780330	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00018250-XLOC_l2_009363	linc-FBXO7	chr22	 32772650	 32780330	+	NA	NA	NA	NA	JUN	NA	chr1:59246463-59249785	Unknown
CUST_47266_PI429285431	6.151887	P	5.4134316	P	1.66838864680789	0	lncRNA	51336-3_{6001..6598}	"gi|211971042|ref|NR_024377.1| Homo sapiens fer-1-like 4 (C. elegans) pseudogene (FER1L4), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|211971042|ref|NR_024377.1| Homo sapiens fer-1-like 4 (C. elegans) pseudogene (FER1L4), non-coding RNA"	NA	NA	NA	NA	NA	NR_024377.1	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.91"	NA	Unknown
CUST_32929_PI429285431	0.8943001	A	0.89789706	A	0.99750988281565	0	lncRNA	34551-1_{1..3000}	n339599|BC033531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2043|NULL|-1.2682700|-0.3418847	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339599|BC033531|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2043|NULL|-1.2682700|-0.3418847	chr3	136471471	136474470	+	NA	NA	NA	NA	STAG1	"hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10chr3:136461471-136471245"	NA	inter
CUST_26591_PI429285431	0.914586	A	0.8985528	A	1.01117535024255	0	lncRNA	28094-1_{1..579}	lnc-C1orf185-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf185-3:1	chr1	 51732193	 51732771	+	lnc-C1orf185-3	lnc-C1orf185-3:1	ENSG00000230272.1	RP11-296A18.7	RNF11	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40chr1:51722193-51739119"	NA	inner
CUST_8964_PI429285431	9.109278	P	9.297199	P	0.87786986724224	0	lncRNA	10498-1_{1..622}	lnc-C9orf69-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C9orf69-1:4	chr9	139007302	139007923	-	lnc-C9orf69-1	lnc-C9orf69-1:4	ENSG00000238227	C9orf69	C9orf69	NA	chr9:139006427-139010731	inner
CUST_7719_PI429285431	2.5730429	A	2.3397155	A	1.1755430716491	0	lncRNA	9351-1_{1..2073}	lnc-DNASE1L3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DNASE1L3-2:1	chr3	 58279914	 58281986	-	lnc-DNASE1L3-2	lnc-DNASE1L3-2:1	ENSG00000248224	ENST00000511761	ABHD6	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ABHD6:range=chr3:58242314-582794925'pad=0,hg19_refFlat_ABHD6:range=chr3:58242314-582794925'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10chr3:58269914-58280461"	NA	inner
LNCA_21_P0005505	0.8746233	A	2.0129812	A	0.454276348559985	0	lncRNA	TCONS_00013862	NA	NA	NA	NA	XLOC_006493	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006493), lincRNA [TCONS_00013862]"	chr7:69057990-69057931	hs|7q11.22	Agilent_HUMAN_G3V2	TCONS_00013862	TCONS_00013862	chr7	 69057931	 69057990	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19265_PI429285431	0.89569616	A	0.899144	A	0.997612992868199	0	lncRNA	20933-1_{1..574}	lnc-TMEM60-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TMEM60-2:1	chr7	 78629521	 78630094	-	lnc-TMEM60-2	lnc-TMEM60-2:1	ENSG00000235751.3	MAGI2-IT1	MAGI2	NA	chr7:78619521-78639614	inner
LNCA_21_P0003000	0.86932635	A	0.86804837	A	1.00088622069552	0	lncRNA	TCONS_00006130	NA	NA	NA	NA	XLOC_002732	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002732), lincRNA [TCONS_00006130]"	chr3:97801430-97801489	hs|3q11.2	Agilent_HUMAN_G3V2	TCONS_00006130	TCONS_00006130	chr3	 97801430	 97801489	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24637_PI429285431	0.91211337	A	0.9673165	A	0.962458920320435	0	lncRNA	26186-1_{1..568}	lnc-GDPD4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GDPD4-2:1	chr11	 76689445	 76690012	-	lnc-GDPD4-2	lnc-GDPD4-2:1	ENSG00000254988.1	CTD-2547H18.1	ACER3	"hg19_refFlat_ACER3:range=chr11:76572021-767313715'pad=0,hg19_refFlat_ACER3:range=chr11:76572021-767313715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70chr11:76679445-76699663"	NA	inner
CUST_51892_PI429285431	5.765772	P	6.1337743	P	0.774854695654987	0	lncRNA	55440-2_{3001..3773}	hg19_lincRNAsTranscripts_TCONS_l2_00013238 range=chr19:56050520-56057660 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013238 range=chr19:56050520-56057660 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 56053520	 56054292	-	NA	NA	NA	NA	SGK110	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr19:56052023-56056909"	NA	inner
CUST_38212_PI429285431	4.4218283	P	4.9173174	P	0.709321164487822	0	lncRNA	39278-1_{1..1629}	n381571|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lhx.2||-0.3577510|-0.2566382	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381571|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lhx.2||-0.3577510|-0.2566382	chr10	126392596	126394224	+	NA	NA	NA	NA	FAM53B	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80chr10:126382596-126413327"	NA	inner
CUST_30990_PI429285431	2.531546	A	2.752309	A	0.858111485871602	0	lncRNA	32778-1_{1..646}	n337153|AF399565|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383980|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383980|4.0593500|-0.0541905	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337153|AF399565|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383980|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383980|4.0593500|-0.0541905	chr11	123847512	123848157	-	NA	NA	NA	NA	OR10S1	NA	chr11:123847403-123848398	inner
CUST_17520_PI429285431	4.1696215	P	4.4649377	P	0.814893710016763	0	lncRNA	19244-1_{1..917}	lnc-EIF2B5-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EIF2B5-2:3	chr3	184456423	184457339	+	lnc-EIF2B5-2	lnc-EIF2B5-2:3	XLOC_002952	linc-VPS8-2	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20"	NA	inter
LNCA_21_P0002084	0.9163942	A	0.95637214	A	0.972669820224334	0	lncRNA	ENST00000430551	NA	BC040913	NA	Hs.650324	XLOC_002238	NA	ENST00000430551	THC2738445	NA	"BROAD Institute lincRNA (XLOC_002238), lincRNA [TCONS_00003350]"	chr2:105105055-105104996	hs|2q12.1	Agilent_HUMAN_G3V2	ENST00000430551	ENST00000430551	chr2	105104996	105105055	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40899_PI429285431	5.445213	P	5.919462	P	0.719841408480562	0	lncRNA	41586-1_{1..3000}	n410731|NR_038164|lncRNA|Homosapiens||RefGeneNoncode|NR_038164||4.6250500|-0.1694006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410731|NR_038164|lncRNA|Homosapiens||RefGeneNoncode|NR_038164||4.6250500|-0.1694006	chr20	  1422806	  1425805	-	NA	NA	NA	NA	NSFL1C	NA	chr20:1422807-1448337	inner
CUST_30133_PI429285431	8.134375	P	8.180748	P	0.9683677912748	0	lncRNA	31907-1_{1..383}	n334779|AJ227872|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245021|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245021|-0.9175250|-0.4186965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334779|AJ227872|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245021|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245021|-0.9175250|-0.4186965	chr7	150270657	150271039	+	NA	NA	NA	NA	GIMAP4	NA	chr7:150264458-150271041	inner
CUST_13163_PI429285431	1.0673261	A	1.0017478	A	1.0465043438704	0	lncRNA	14791-1_{1..607}	lnc-PTDSS1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTDSS1-2:1	chr8	 96996323	 96996929	+	lnc-PTDSS1-2	lnc-PTDSS1-2:1	XLOC_006874	linc-PTDSS1-1	NA	NA	NA	inter
CUST_21486_PI429285431	3.132474	A	3.050128	A	1.05873828049247	0	lncRNA	23104-1_{1..576}	lnc-FSD1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FSD1L-1:1	chr9	108157778	108158353	+	lnc-FSD1L-1	lnc-FSD1L-1:1	ENSG00000242010.1	RP11-287A8.6	SLC44A1	NA	chr9:108147778-108153682	inter
CUST_34695_PI429285431	3.560482	P	0.99465716	A	5.9209342778985	0	lncRNA	36146-1_{1..3000}	n341602|D83780|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4073|NULL|16.7207000|-0.1508213	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341602|D83780|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4073|NULL|16.7207000|-0.1508213	chr8	126036508	126039507	-	NA	NA	NA	NA	KIAA0196	NA	chr8:126036502-126104061	inner
CUST_13617_PI429285431	1.6253368	A	1.2910076	A	1.26079105117265	0	lncRNA	15256-1_{1..347}	lnc-SHQ1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SHQ1-1:1	chr3	 72713319	 72713665	-	lnc-SHQ1-1	lnc-SHQ1-1:1	XLOC_003162	linc-RYBP-3	NA	NA	NA	inter
CUST_50072_PI429285431	10.404291	P	10.249375	P	1.11335679185128	0	lncRNA	53805-1_{1..1406}	hg19_lincRNAsTranscripts_TCONS_l2_00027830 range=chr8:70041903-70043442 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00027830 range=chr8:70041903-70043442 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr8	 70041903	 70043308	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00"	NA	inter
CUST_2893_PI429285431	1.7200317	A	2.5126684	A	0.577288063350139	0	lncRNA	2874-1_{1..579}	"transcript_id ""ENST00000451953.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451953.1"" | genecode_v17"	chr7	101206059	101206637	-	ENSG00000233123.1	ENST00000451953.1	RP5-1059M17.1	RP5-1059M17.1-003	EMID2	"hg19_refFlat_OVCH1:range=chr12:29580504-296506195'pad=0,hg19_refFlat_OVCH1:range=chr12:29580504-296506195'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30chr7:101196059-101202304"	NA	inter
CUST_41181_PI429285431	6.109288	P	5.8469796	P	1.19939627724199	0	lncRNA	42023-1_{1..74}	ENST00000578311 ncrna:miRNA chromosome:GRCh37:12:121160996:121161069:1 gene:ENSG00000265455 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578311 ncrna:miRNA chromosome:GRCh37:12:121160996:121161069:1 gene:ENSG00000265455 gene_biotype:miRNA transcript_biotype:miRNA	chr12	121160996	121161069	+	ENSG00000265455	ENST00000578311	NA	NA	UNC119B	NA	chr12:121150996-121161443	inner
CUST_1140_PI429285431	0.9110872	A	0.9247901	A	0.990546838230173	0	lncRNA	1129-1_{1..576}	"transcript_id ""ENST00000447078.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447078.1"" | genecode_v17"	chr2	151974469	151975044	-	ENSG00000236885.1	ENST00000447078.1	AC018731.3	AC018731.3-001	RBM43	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60chr2:152042675-152052723"	NA	inter
CUST_9064_PI429285431	2.5828278	A	1.638573	A	1.92419471885787	0	lncRNA	10587-1_{1..1979}	lnc-FST-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FST-1:1	chr5	 52967196	 52969174	+	lnc-FST-1	lnc-FST-1:1	ENSG00000248194	ENST00000502414	NDUFS4	NA	chr5:52957196-52978051	inner
CUST_45187_PI429285431	4.3154554	P	3.3145828	P	2.00121004636499	0	lncRNA	49656-3_{6001..6219}	"gi|410170559|ref|XR_171115.1| PREDICTED: Homo sapiens uncharacterized LOC101059959 (LOC101059959), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410170559|ref|XR_171115.1| PREDICTED: Homo sapiens uncharacterized LOC101059959 (LOC101059959), misc_RNA"	NA	NA	NA	NA	NA	XR_171115.1	NA	NA	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-24.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.11;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80"	NA	Unknown
CUST_31244_PI429285431	0.88607055	A	2.4012895	A	0.349843368539507	0	lncRNA	33033-1_{1..1539}	n337694|BC025664|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|76|NULL|-0.7758470|-0.2930806	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n337694|BC025664|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|76|NULL|-0.7758470|-0.2930806	chr15	 35838395	 35839933	+	NA	NA	NA	NA	ATPBD4	NA	chr15:35828395-35838404	inter
CUST_9947_PI429285431	4.695741	P	5.264015	P	0.674423166988116	0	lncRNA	11470-1_{1..691}	lnc-STXBP6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STXBP6-1:2	chr14	 25614608	 25615298	-	lnc-STXBP6-1	lnc-STXBP6-1:2	XLOC_010978	linc-STXBP6-1	NA	NA	NA	inter
CUST_34188_PI429285431	6.2579713	P	5.9650245	P	1.22514015350172	0	lncRNA	35703-1_{1..1647}	n341038|AK094516|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3504|NULL|0.0117517|-0.2109874	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341038|AK094516|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3504|NULL|0.0117517|-0.2109874	chr11	 61114589	 61116235	+	NA	NA	NA	NA	DAK	NA	chr11:61104589-61116231	inner
CUST_49324_PI429285431	3.1226666	P	4.7379174	P	0.326408198610002	0	lncRNA	53140-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00022337 range=chr5:61003088-61029193 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022337 range=chr5:61003088-61029193 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 61003088	 61006087	+	NA	NA	NA	NA	C5orf64	NA	chr5:60993088-61002362	inter
CUST_2083_PI429285431	1.4017701	A	1.2890224	A	1.08128565059572	0	lncRNA	2074-1_{1..2508}	"transcript_id ""ENST00000566945.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566945.1"" | genecode_v17"	chr5	 10195233	 10197740	-	ENSG00000260515.1	ENST00000566945.1	CTD-2199O4.3	CTD-2199O4.3-001	NA	NA	NA	inter
CUST_21958_PI429285431	2.1490328	A	3.4072256	A	0.418067326217732	0	lncRNA	23566-1_{1..379}	lnc-B4GALT3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-B4GALT3-1:1	chr1	161129092	161129470	-	lnc-B4GALT3-1	lnc-B4GALT3-1:1	ENSG00000224985.1	RP11-297K8.2	PPOX	"hg19_refFlat_UFC1:range=chr1:161123788-1611282825'pad=0,hg19_refFlat_UFC1:range=chr1:161123788-1611282825'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30chr1:161136181-161139139"	NA	inter
LNCA_21_P0013435	3.9241157	P	0.87113917	A	8.29922447827907	0	lncRNA	ENST00000416366	NA	NA	NA	NA	XLOC_l2_013873	NA	ENST00000416366	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013873), lincRNA [TCONS_l2_00027390]"	chr7:65855177-65855118	hs|7q11.21	Agilent_HUMAN_G3V2	ENST00000416366	ENST00000416366	chr7	 65855118	 65855177	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24036_PI429285431	2.1583226	A	1.0202134	A	2.20092380403056	0	lncRNA	25588-1_{1..567}	lnc-TIMP3-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMP3-6:4	chr22	 34128242	 34128808	+	lnc-TIMP3-6	lnc-TIMP3-6:4	ENSG00000224973.1	CTA-282F2.3	LARGE	NA	chr22:34118242-34138488	inner
CUST_24741_PI429285431	1.0899439	A	1.0795493	A	1.00723100605662	0	lncRNA	26286-1_{1..434}	lnc-BEST3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BEST3-2:1	chr12	 70340681	 70341114	-	lnc-BEST3-2	lnc-BEST3-2:1	ENSG00000257241.1	RP11-611E13.3	C12orf28	NA	chr12:70330681-70350861	inter
CUST_37680_PI429285431	4.60542	P	4.836131	P	0.852214793248464	0	lncRNA	38773-1_{1..1151}	n346168|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1718|NULL|-1.5079100|-0.2900885	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346168|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1718|NULL|-1.5079100|-0.2900885	chr12	 65277102	 65278252	+	NA	NA	NA	NA	TBC1D30	NA	chr12:65267102-65274802	inter
LNCA_21_P0008409	3.0424798	P	3.5100298	P	0.723191687321826	0	lncRNA	TCONS_00022686	NA	NA	NA	NA	XLOC_010978	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010978), lincRNA [TCONS_00022686]"	chr14:25571296-25571237	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022686	TCONS_00022686	chr14	 25571237	 25571296	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_824_PI429285431	0.8935971	A	1.763655	A	0.547124892305113	0	lncRNA	817-1_{1..597}	"transcript_id ""ENST00000423593.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000423593.1"" | genecode_v17"	chr2	 34292293	 34292889	+	ENSG00000237790.1	ENST00000423593.1	AC009499.2	AC009499.2-001	NA	NA	NA	inter
CUST_45374_PI429285431	6.3153276	P	6.853909	P	0.688447525838879	0	lncRNA	49808-1_{1..1354}	"gi|308818207|ref|NR_036691.1| Homo sapiens NFYC pseudogene (LOC494127), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|308818207|ref|NR_036691.1| Homo sapiens NFYC pseudogene (LOC494127), non-coding RNA"	Chr9	 89698801	 89700154	-	494127	NR_036691.1	NA	NA	NA	NA	NA	inter
CUST_30960_PI429285431	4.7157	P	4.9156265	P	0.870594915771546	0	lncRNA	32748-1_{1..431}	n337085|DQ396626|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343122|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343122|1.2440200|-0.1370356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337085|DQ396626|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343122|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343122|1.2440200|-0.1370356	chr17	 41610637	 41611067	-	NA	NA	NA	NA	DHX8	NA	chr17:41600637-41601680	inner
CUST_19709_PI429285431	3.7585397	P	3.4166863	P	1.26738372981581	0	lncRNA	21366-1_{1..537}	lnc-OR4N4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR4N4-1:3	chr15	 22290288	 22290824	+	lnc-OR4N4-1	lnc-OR4N4-1:3	ENSG00000259176.1	RP11-69H14.6	OR4M2	NA	chr15:22297500-22300485	inter
CUST_20290_PI429285431	0.8915418	A	0.8961848	A	0.996786890760325	0	lncRNA	21934-1_{1..520}	lnc-PIKFYVE-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PIKFYVE-2:1	chr2	209404834	209405353	+	lnc-PIKFYVE-2	lnc-PIKFYVE-2:1	ENSG00000231896.1	AC019185.4	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20"	NA	inter
CUST_37721_PI429285431	1.1445163	A	0.88516706	A	1.19693867675977	0	lncRNA	38819-2_{3001..6000}	n346224|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1774|NULL|-1.5995900|-0.2887375	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346224|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1774|NULL|-1.5995900|-0.2887375	chr12	100553208	100556207	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31838_PI429285431	5.3124228	P	5.1839023	P	1.09317206597841	0	lncRNA	33572-1_{1..1379}	n338384|BC019855|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|780|NULL|-0.9439750|-0.2571671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338384|BC019855|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|780|NULL|-0.9439750|-0.2571671	chr14	 73989247	 73990625	+	NA	NA	NA	NA	HEATR4	"hg19_refFlat_HEATR4:range=chr14:73945311-739898565'pad=0,hg19_refFlat_HEATR4:range=chr14:73945311-739898565'pad=0 3'pad=0 strand=- repeatMasking=none,-98.00chr14:73979247-74001015"	NA	inner
CUST_47077_PI429285431	13.304699	P	13.679443	P	0.771242254167514	0	lncRNA	51161-1_{1..1991}	"gi|224809456|ref|NR_027297.1| Homo sapiens homer homolog 3 (Drosophila) (HOMER3), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224809456|ref|NR_027297.1| Homo sapiens homer homolog 3 (Drosophila) (HOMER3), transcript variant 5, non-coding RNA"	Chr19	 19040010	 19042000	-	9454	NR_027297.1	NA	NA	NA	NA	NA	inter
CUST_38359_PI429285431	2.43098	A	1.673938	A	1.69002196833529	0	lncRNA	39401-1_{1..650}	n382142|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001wke.2||1.8060200|-0.1491697	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382142|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001wke.2||1.8060200|-0.1491697	chr14	 23998604	 23999253	-	NA	NA	NA	NA	ZFHX2	NA	chr14:23990064-24010891	inter
CUST_32621_PI429285431	3.591844	P	3.3320224	A	1.19733063660254	0	lncRNA	34280-1_{1..437}	n339244|AK130986|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1676|NULL|-0.7574710|-0.2713338	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339244|AK130986|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1676|NULL|-0.7574710|-0.2713338	chr3	  8618879	  8619315	-	NA	NA	NA	NA	LMCD1	NA	chr3:8608879-8609806	inter
CUST_14528_PI429285431	1.9091997	A	1.0598608	A	1.80167513713561	0	lncRNA	16196-1_{1..1265}	lnc-FAM92B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM92B-3:1	chr16	 85386281	 85387545	-	lnc-FAM92B-3	lnc-FAM92B-3:1	XLOC_012035	linc-FAM92B-2	NA	NA	NA	inter
CUST_25345_PI429285431	6.630264	P	6.5705457	P	1.04226222930593	0	lncRNA	26876-1_{1..2757}	lnc-C4orf42-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C4orf42-1:2	chr4	  1281814	  1284570	+	lnc-C4orf42-1	lnc-C4orf42-1:2	ENSG00000196810.4	CTBP1-AS1	MAEA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90chr4:1283672-1292079"	NA	inter
CUST_19697_PI429285431	2.674055	A	3.7345304	P	0.479474036303234	0	lncRNA	21355-1_{1..511}	lnc-AC007405.2.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC007405.2.1-4:1	chr2	171207246	171207756	-	lnc-AC007405.2.1-4	lnc-AC007405.2.1-4:1	ENSG00000231898.2	AC012594.1	MYO3B	NA	chr2:171197246-171217621	inter
CUST_37360_PI429285431	1.0944111	A	1.3317446	A	0.848311779398309	0	lncRNA	38464-1_{1..290}	n345808|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1357|NULL|-1.2717400|-0.2718964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345808|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1357|NULL|-1.2717400|-0.2718964	chr5	135711934	135712223	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008012	0.90953153	A	0.92807645	A	0.987227905398413	0	lncRNA	ENST00000435401	NA	NA	NA	NA	XLOC_010686	NA	ENST00000435401	NA	NA	"BROAD Institute lincRNA (XLOC_010686), lincRNA [TCONS_00021683]"	chr13:90201190-90201131	hs|13q31.3	Agilent_HUMAN_G3V2	ENST00000435401	ENST00000435401	chr13	 90201131	 90201190	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36929_PI429285431	2.729954	A	2.727455	A	1.00173367588558	0	lncRNA	38084-1_{1..1565}	n345398|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_947|NULL|-1.4052000|-0.2091868	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345398|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_947|NULL|-1.4052000|-0.2091868	chr21	 34331177	 34332741	+	NA	NA	NA	NA	NA	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00"	NA	inter
CUST_21104_PI429285431	0.92132497	A	0.9615139	A	0.97252758046222	0	lncRNA	22729-1_{1..474}	lnc-TMEM14E-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM14E-1:1	chr3	152214544	152215017	-	lnc-TMEM14E-1	lnc-TMEM14E-1:1	ENSG00000243305.1	RP11-362A9.3	NA	"hg19_refFlat_MBNL1:range=chr3:152017983-1521771165'pad=0,hg19_refFlat_MBNL1:range=chr3:152017983-1521771165'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00"	NA	inter
CUST_25270_PI429285431	0.9041761	A	0.89940906	A	1.0033097254215	0	lncRNA	26800-1_{1..557}	lnc-LYN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LYN-1:1	chr8	 56987566	 56988122	+	lnc-LYN-1	lnc-LYN-1:1	ENSG00000253603.1	CTA-397H3.3	RPS20	NA	chr8:56980739-56987140	inter
LNCA_21_P0009684	0.88947344	A	0.9016662	A	0.991584235275702	0	lncRNA	TCONS_00026906	NA	NA	NA	NA	XLOC_012979	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012979), lincRNA [TCONS_00026906]"	chr19:14902027-14902239	hs|19p13.12	Agilent_HUMAN_G3V2	TCONS_00026906	TCONS_00026906	chr19	 14902027	 14902239	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10188_PI429285431	4.453229	P	4.628101	P	0.885846110397818	0	lncRNA	11714-1_{1..3000}	lnc-PREX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PREX1-2:1	chr20	 47132595	 47135594	-	lnc-PREX1-2	lnc-PREX1-2:1	XLOC_013779	linc-SULF2-10	NA	NA	NA	inter
CUST_14485_PI429285431	5.4910483	P	5.571044	P	0.946060466485717	0	lncRNA	16151-1_{1..793}	lnc-TP53I11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TP53I11-1:1	chr11	 44995123	 44995915	-	lnc-TP53I11-1	lnc-TP53I11-1:1	XLOC_009428	linc-TP53I11-2	NA	NA	NA	inter
LNCA_21_P0010555	2.7827103	A	2.3476255	A	1.35199029916943	0	lncRNA	ENST00000433980	NA	NA	NA	NA	XLOC_l2_000399	NA	ENST00000433980	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000399), lincRNA [TCONS_l2_00000563]"	chr1:143401689-143401748	hs|1q21.1	Agilent_HUMAN_G3V2	ENST00000433980	ENST00000433980	chr1	143401689	143401748	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43322_PI429285431	1.6976928	A	2.2792268	A	0.668252854411488	0	lncRNA	48153-1_{1..706}	ENST00000553914 havana:lincRNA chromosome:GRCh37:14:50474054:50506602:-1 gene:ENSG00000258929 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"gencode_v17,ensembl.GRCh37.72,"	>ENST00000553914 havana:lincRNA chromosome:GRCh37:14:50474054:50506602:-1 gene:ENSG00000258929 gene_biotype:lincRNA transcript_biotype:lincRNA	chr14	 50474054	 50474759	-	ENSG00000258929	ENST00000553914	NA	NA	C14orf182	NA	chr14:50464054-50474238	inner
LNCA_21_P0005262	11.337762	P	11.72223	P	0.766061434917412	0	lncRNA	ENST00000420268	NA	NA	NA	NA	XLOC_006260	NA	ENST00000420268	NA	NA	"BROAD Institute lincRNA (XLOC_006260), lincRNA [TCONS_00013082]"	chr7:133970746-133970805	hs|7q33	Agilent_HUMAN_G3V2	ENST00000420268	ENST00000420268	chr7	133970746	133970805	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14819_PI429285431	2.3750389	A	2.5593216	A	0.880086541324504	0	lncRNA	16479-1_{1..321}	lnc-KIAA1383-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1383-2:2	chr1	232861888	232862208	+	lnc-KIAA1383-2	lnc-KIAA1383-2:2	XLOC_000617	linc-KIAA1383-1	NA	NA	NA	inter
CUST_21164_PI429285431	8.384172	P	8.292112	P	1.06589106430932	0	lncRNA	22787-1_{1..470}	lnc-BOLA2B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BOLA2B-1:3	chr16	 30195825	 30196294	-	lnc-BOLA2B-1	lnc-BOLA2B-1:3	ENSG00000261416.1	RP11-455F5.5	CORO1A	NA	chr16:30194731-30200397	inner
CUST_42968_PI429285431	3.1190858	A	3.761478	P	0.640649776274073	0	lncRNA	46112-1_{1..129}	ENST00000363485 ncrna:snoRNA chromosome:GRCh37:3:172489067:172489195:-1 gene:ENSG00000200355 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363485 ncrna:snoRNA chromosome:GRCh37:3:172489067:172489195:-1 gene:ENSG00000200355 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	172489067	172489195	-	ENSG00000200355	ENST00000363485	NA	NA	ECT2	NA	chr3:172479067-172499195	inner
CUST_39552_PI429285431	2.5195718	A	0.8719534	A	3.1331599018379	0	lncRNA	40497-1_{1..3000}	n387495|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ful.1||-0.5398650|-0.3317284	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387495|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ful.1||-0.5398650|-0.3317284	chr6	  1161725	  1164724	+	NA	NA	NA	NA	NA	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.11;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60"	NA	inter
CUST_15520_PI429285431	1.3980341	A	0.8838142	A	1.42822165701759	0	lncRNA	17206-1_{1..350}	lnc-UGT8-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UGT8-2:2	chr4	115412008	115412357	+	lnc-UGT8-2	lnc-UGT8-2:2	XLOC_003652	linc-UGT8-1	NA	NA	NA	inter
CUST_17511_PI429285431	3.5124593	P	4.059447	P	0.684447741924221	0	lncRNA	19236-1_{1..1376}	lnc-GBP5-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GBP5-2:6	chr1	 90098216	 90099591	-	lnc-GBP5-2	lnc-GBP5-2:6	XLOC_000909	linc-GBP5-2	LRRC8C	NA	chr1:90098644-90108492	inter
LNCA_21_P0011913	1.3486735	A	1.9435277	A	0.66211136535993	0	lncRNA	AK056077	NA	AK056077	NA	Hs.664626	XLOC_l2_008008	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008008), lincRNA [TCONS_l2_00014563]"	chr2:47895991-47895932	hs|2p16.3	Agilent_HUMAN_G3V2	AK056077	AK056077	chr2	 47895932	 47895991	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18913_PI429285431	3.6551273	P	4.5022907	P	0.555876616468895	0	lncRNA	20604-1_{1..507}	lnc-HIST1H2AG-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-HIST1H2AG-2:1	chr6	 26991544	 26992050	+	lnc-HIST1H2AG-2	lnc-HIST1H2AG-2:1	ENSG00000224843	NCRNA00240	NA	NA	NA	inter
CUST_36705_PI429285431	1.0597836	A	1.0536036	A	1.00429283751733	0	lncRNA	37886-1_{1..456}	n345193|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_742|NULL|-1.3212800|-0.3200049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345193|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_742|NULL|-1.3212800|-0.3200049	chr12	110667900	110668355	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
LNCA_21_P0012660	0.90637046	A	2.205042	A	0.406500338846277	0	lncRNA	TCONS_l2_00021100	NA	NA	NA	NA	XLOC_l2_011095	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011095), lincRNA [TCONS_l2_00021100]"	chr4:34124945-34124886	hs|4p15.1	Agilent_HUMAN_G3V2	TCONS_l2_00021100	TCONS_l2_00021100	chr4	 34124886	 34124945	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31647_PI429285431	2.1413825	A	1.7293564	A	1.33055311208746	0	lncRNA	33398-1_{1..1657}	n338169|BC028144|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|558|NULL|2.8009500|-0.1952548	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n338169|BC028144|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|558|NULL|2.8009500|-0.1952548	chr15	100884661	100886317	-	NA	NA	NA	NA	ADAMTS17	NA	chr15:100874661-100882183	inter
CUST_47906_PI429285431	1.1298313	A	0.9982708	A	1.09547799118205	0	lncRNA	51798-1_{1..2133}	"gi|410171935|ref|XR_171482.1| PREDICTED: Homo sapiens double homeobox 4 like 9 (DUX4L9), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171935|ref|XR_171482.1| PREDICTED: Homo sapiens double homeobox 4 like 9 (DUX4L9), misc_RNA"	NA	NA	NA	NA	NA	XR_171482.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004947	0.91815543	A	0.96194243	A	0.970105126429116	0	lncRNA	TCONS_00011963	NA	NA	NA	NA	XLOC_005476	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005476), lincRNA [TCONS_00011963]"	chr6:137745653-137745712	hs|6q23.3	Agilent_HUMAN_G3V2	TCONS_00011963	TCONS_00011963	chr6	137745653	137745712	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_518_PI429285431	0.90510243	A	0.91873395	A	0.990595848575723	0	lncRNA	510-1_{1..466}	"transcript_id ""ENST00000414765.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414765.1"" | genecode_v17"	chr1	188838608	188839073	-	ENSG00000238054.1	ENST00000414765.1	RP11-316I3.2	RP11-316I3.2-001	NA	NA	NA	inter
CUST_30975_PI429285431	6.6994877	P	7.0022945	P	0.810673674820965	0	lncRNA	32763-1_{1..201}	n337125|AB107019|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383602|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383602|-0.0412187|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337125|AB107019|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383602|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383602|-0.0412187|-1.0000000	chr11	   639555	   639755	+	NA	NA	NA	NA	DEAF1	NA	chr11:644225-649756	inner
CUST_27698_PI429285431	0.8932511	A	0.8940317	A	0.999459075663203	0	lncRNA	29277-1_{1..781}	n324906|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000157918|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000157918|-1.0002600|-0.1796539	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324906|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000157918|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000157918|-1.0002600|-0.1796539	chr21	 15212725	 15213505	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007598	4.1096883	P	4.764391	P	0.635206376448602	0	lncRNA	TCONS_00020509	NA	NA	NA	NA	XLOC_009826	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009826), lincRNA [TCONS_00020509]"	chr12:89972067-89972126	hs|12q21.33	Agilent_HUMAN_G3V2	TCONS_00020509	TCONS_00020509	chr12	 89972067	 89972126	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009607	0.891725	A	0.90503526	A	0.990816459480112	0	lncRNA	TCONS_00026625	NA	NA	NA	NA	XLOC_012687	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012687), lincRNA [TCONS_00026625]"	chr18:53805009-53805844	hs|18q21.31	Agilent_HUMAN_G3V2	TCONS_00026625	TCONS_00026625	chr18	 53805009	 53805844	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7187_PI429285431	1.3177073	A	0.9504931	A	1.2898597446584	0	lncRNA	7488-1_{1..277}	"transcript_id ""ENST00000493013.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000493013.2"" | genecode_v17"	chr3	113351551	113351827	+	ENSG00000241529.2	ENST00000493013.2	RN7SL767P	RN7SL767P-201	SIDT1	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80chr3:113341551-113348422"	NA	inter
CUST_37740_PI429285431	5.379774	P	5.3205767	P	1.04188590543442	0	lncRNA	38833-1_{1..903}	n346241|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1791|NULL|-1.3261900|-0.1913143	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346241|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1791|NULL|-1.3261900|-0.1913143	chr22	 23242925	 23243827	-	NA	NA	NA	NA	IGLL5	"hg19_refFlat_IGLL5:range=chr22:23230234-232378745'pad=0,hg19_refFlat_IGLL5:range=chr22:23230234-232378745'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.20;hg19_refFlat_IGLL1:range=chr22:23915724-239223775'pad=0,hg19_refFlat_IGLL1:range=chr22:23915724-239223775'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_IGLL5:range=chr22:23230340-232378745'pad=0,hg19_refFlat_IGLL5:range=chr22:23230340-232378745'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.20;hg19_refFlat_IGLL1:range=chr22:23915453-239223775'pad=0,hg19_refFlat_IGLL1:range=chr22:23915453-239223775'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10chr22:23232925-23238014"	NA	inter
CUST_13381_PI429285431	4.1903167	P	4.341801	P	0.900323698389873	0	lncRNA	15016-1_{1..461}	lnc-AL359736.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL359736.1-2:1	chr13	 24913128	 24913588	-	lnc-AL359736.1-2	lnc-AL359736.1-2:1	XLOC_010534	linc-C1QTNF9B	NA	NA	NA	inter
CUST_38201_PI429285431	11.985923	P	11.952962	P	1.02310981189902	0	lncRNA	39269-2_{3001..3217}	n381542|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001koj.3||2.9460400|-0.1323672	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381542|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001koj.3||2.9460400|-0.1323672	chr10	 99476480	 99476696	+	NA	NA	NA	NA	MARVELD1	NA	chr10:99473465-99477909	inner
LNCA_21_P0001377	0.88358736	A	0.8915418	A	0.994501574323763	0	lncRNA	TCONS_00001175	NA	NA	NA	NA	XLOC_000428	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000428), lincRNA [TCONS_00001175]"	chr1:158121928-158121987	hs|1q23.1	Agilent_HUMAN_G3V2	TCONS_00001175	TCONS_00001175	chr1	158121928	158121987	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49067_PI429285431	5.288307	P	5.268676	P	1.01370017120924	0	lncRNA	52892-1_{1..2006}	hg19_lincRNAsTranscripts_TCONS_l2_00021023 range=chr4:3943393-3957155 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021023 range=chr4:3943393-3957155 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  3943393	  3945398	-	NA	NA	NA	NA	NA	"hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30;hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30;hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30"	NA	inter
CUST_8729_PI429285431	7.27056	P	7.4753046	P	0.867692280938534	0	lncRNA	10272-1_{1..648}	lnc-C9orf69-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C9orf69-1:3	chr9	139009712	139010359	-	lnc-C9orf69-1	lnc-C9orf69-1:3	ENSG00000238227	C9orf69	C9orf69	NA	chr9:139006427-139010731	inner
CUST_499_PI429285431	2.9428427	P	3.5563707	P	0.653596426152266	0	lncRNA	490-1_{1..532}	"transcript_id ""ENST00000456771.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456771.1"" | genecode_v17"	chr1	181159607	181160138	-	ENSG00000225359.1	ENST00000456771.1	RP11-540K16.2	RP11-540K16.2-001	NA	NA	NA	inter
CUST_43429_PI429285431	7.1544127	P	7.5849366	P	0.741992289447698	0	lncRNA	48238-1_{1..2640}	"gi|194239657|ref|NR_003929.2| Homo sapiens peptidylprolyl isomerase E-like pseudogene (PPIEL), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|194239657|ref|NR_003929.2| Homo sapiens peptidylprolyl isomerase E-like pseudogene (PPIEL), non-coding RNA"	Chr1	 39987952	 39990591	-	728448	NR_003929.2	NA	NA	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_BMP8A:range=chr1:39957664-399914705'pad=0,hg19_refFlat_BMP8A:range=chr1:39957664-399914705'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BMP8B:range=chr1:40226091-402541575'pad=0,hg19_refFlat_BMP8B:range=chr1:40226091-402541575'pad=0 3'pad=0 strand=- repeatMasking=none,-100.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40"	NA	inter
CUST_44060_PI429285431	1.6134522	A	0.891317	A	1.64962168179624	0	lncRNA	48733-2_{3001..3638}	"gi|301129268|ref|NR_034176.1| Homo sapiens RUN and FYVE domain containing 4 (RUFY4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301129268|ref|NR_034176.1| Homo sapiens RUN and FYVE domain containing 4 (RUFY4), transcript variant 2, non-coding RNA"	Chr2	218902657	218903294	+	285180	NR_034176.1	NA	NA	NA	NA	NA	inter
CUST_15500_PI429285431	0.8951077	A	1.1248045	A	0.852814102245024	0	lncRNA	17190-1_{1..311}	lnc-PMAIP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PMAIP1-1:1	chr18	 57796732	 57797042	+	lnc-PMAIP1-1	lnc-PMAIP1-1:1	XLOC_012698	linc-CDH20-2	NA	NA	NA	inter
LNCA_21_P0008665	0.87761897	A	0.8712708	A	1.0044099113033	0	lncRNA	TCONS_00023489	NA	NA	NA	NA	XLOC_011335	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011335), lincRNA [TCONS_00023489]"	chr15:83682487-83683005	hs|15q25.2	Agilent_HUMAN_G3V2	TCONS_00023489	TCONS_00023489	chr15	 83682487	 83683005	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_386_PI429285431	5.812091	P	3.4009094	P	5.31909793484999	0	lncRNA	378-1_{1..1326}	"transcript_id ""ENST00000602412.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602412.1"" | genecode_v17"	chr1	121133256	121134581	+	ENSG00000269996.1	ENST00000602412.1	RP11-343N15.5	RP11-343N15.5-001	NA	NA	NA	inter
CUST_8211_PI429285431	1.1187327	A	0.8845738	A	1.17622079339355	0	lncRNA	9804-1_{1..2222}	lnc-PRKACG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PRKACG-1:1	chr9	 71590580	 71592801	-	lnc-PRKACG-1	lnc-PRKACG-1:1	ENSG00000249652	ENST00000506785	PIP5K1B	NA	chr9:71580580-71600757	inner
CUST_9959_PI429285431	0.8990633	A	0.9018259	A	0.998086943828088	0	lncRNA	11483-1_{1..1436}	lnc-RND3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RND3-4:1	chr2	151022596	151024031	-	lnc-RND3-4	lnc-RND3-4:1	XLOC_002353	linc-MMADHC-3	NA	NA	NA	inter
CUST_30146_PI429285431	2.3328862	A	2.1828775	A	1.1095761632141	0	lncRNA	31920-1_{1..389}	n334795|AJ230656|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245091|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245091|2.0457400|-0.1671250	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334795|AJ230656|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245091|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245091|2.0457400|-0.1671250	chr14	107034727	107035115	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001134	1.9653751	A	2.7272897	A	0.589713203034404	0	lncRNA	ENST00000433377	NA	NA	NA	NA	XLOC_000841	NA	ENST00000433377	NA	NA	"BROAD Institute lincRNA (XLOC_000841), lincRNA [TCONS_00000525]"	chr1:54982144-54982085	hs|1p32.3	Agilent_HUMAN_G3V2	ENST00000433377	ENST00000433377	chr1	 54982085	 54982144	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3178_PI429285431	3.8428621	P	4.44506	P	0.658749606464478	0	lncRNA	3157-2_{3001..3296}	"transcript_id ""ENST00000564832.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564832.1"" | genecode_v17"	chr8	 73862385	 73862680	+	ENSG00000260838.2	ENST00000564832.1	RP11-531A24.3	RP11-531A24.3-001	KCNB2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10chr8:73849385-73850584"	NA	inter
CUST_3180_PI429285431	1.2021735	A	2.2452445	A	0.485293351337088	0	lncRNA	3159-1_{1..599}	"transcript_id ""ENST00000518355.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518355.1"" | genecode_v17"	chr8	 74271148	 74271746	+	ENSG00000253339.1	ENST00000518355.1	RP11-434I12.3	RP11-434I12.3-002	NA	NA	NA	inter
LNCA_21_P0007013	0.91728795	A	0.9475012	A	0.979275536610406	0	lncRNA	TCONS_00018588	NA	NA	NA	NA	XLOC_008922	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008922), lincRNA [TCONS_00018588]"	chr10:102819888-102819376	hs|10q24.31	Agilent_HUMAN_G3V2	TCONS_00018588	TCONS_00018588	chr10	102819376	102819888	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42430_PI429285431	0.91103894	A	0.9132324	A	0.998480764593609	0	lncRNA	45150-1_{1..72}	ENST00000516748 ncrna:snoRNA chromosome:GRCh37:7:148983533:148983604:-1 gene:ENSG00000252557 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516748 ncrna:snoRNA chromosome:GRCh37:7:148983533:148983604:-1 gene:ENSG00000252557 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	148983533	148983604	-	ENSG00000252557	ENST00000516748	NA	NA	ZNF783	NA	chr7:148973533-148982085	inter
CUST_20159_PI429285431	5.478877	P	6.286003	P	0.571519251010632	0	lncRNA	21804-1_{1..481}	lnc-SGTB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SGTB-2:1	chr5	 65440487	 65440967	-	lnc-SGTB-2	lnc-SGTB-2:1	ENSG00000253744.1	AC025442.3	SREK1	"hg19_refFlat_SREK1:range=chr5:65440205-654519005'pad=0,hg19_refFlat_SREK1:range=chr5:65440205-654519005'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30;hg19_refFlat_SREK1:range=chr5:65440205-654746965'pad=0,hg19_refFlat_SREK1:range=chr5:65440205-654746965'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30chr5:65440085-65450623"	NA	inner
CUST_19463_PI429285431	1.8050953	A	0.92066586	A	1.84603440359411	0	lncRNA	21122-1_{1..1168}	lnc-C10orf28-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf28-1:1	chr10	100015345	100016512	+	lnc-C10orf28-1	lnc-C10orf28-1:1	ENSG00000230928.1	RP11-34A14.3	LOXL4	"hg19_refFlat_LOXL4:range=chr10:100008678-1000227765'pad=0,hg19_refFlat_LOXL4:range=chr10:100008678-1000227765'pad=0 3'pad=0 strand=- repeatMasking=none,-102.90;hg19_refFlat_LOXL3:range=chr2:74760733-747797615'pad=0,hg19_refFlat_LOXL3:range=chr2:74760733-747797615'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10chr10:100007443-100026332"	NA	inner
CUST_38025_PI429285431	0.90426177	A	2.243177	A	0.395317785736213	0	lncRNA	39110-1_{1..593}	n377599|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029969||-1.0383700|-0.2107209	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377599|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029969||-1.0383700|-0.2107209	chr6	  2438652	  2439244	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003485	1.4755058	A	0.96115553	A	1.42835072495316	0	lncRNA	ENST00000515728	NA	NA	NA	NA	XLOC_004024	NA	ENST00000515728	NA	NA	"BROAD Institute lincRNA (XLOC_004024), lincRNA [TCONS_00007798]"	chr4:101581516-101581457	hs|4q24	Agilent_HUMAN_G3V2	ENST00000515728	ENST00000515728	chr4	101581457	101581516	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007274	1.7852312	A	0.9504402	A	1.7835986341832	0	lncRNA	TCONS_00019461	NA	NA	NA	NA	XLOC_009274	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009274), lincRNA [TCONS_00019461]"	chr11:109843895-109843954	hs|11q22.3	Agilent_HUMAN_G3V2	TCONS_00019461	TCONS_00019461	chr11	109843895	109843954	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45379_PI429285431	1.8022436	A	3.8003974	A	0.250320126868809	0	lncRNA	49813-1_{1..677}	"gi|310120374|ref|XR_108975.1| PREDICTED: Homo sapiens uncharacterized LOC100128909 (LOC100128909), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310120374|ref|XR_108975.1| PREDICTED: Homo sapiens uncharacterized LOC100128909 (LOC100128909), misc_RNA"	NA	NA	NA	NA	NA	XR_108975.1	NA	NA	NA	NA	NA	Unknown
CUST_35514_PI429285431	0.9207236	A	0.9224908	A	0.998775820222665	0	lncRNA	36921-1_{1..1533}	n342617|BC035733|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5118|NULL|-0.8604660|-0.3169065	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342617|BC035733|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5118|NULL|-0.8604660|-0.3169065	chr4	119585241	119586773	-	NA	NA	NA	NA	METTL14	NA	chr4:119575241-119615621	inter
LNCA_21_P0005152	6.1964407	P	6.6687984	P	0.720785702869973	0	lncRNA	TCONS_00012640	NA	NA	NA	NA	XLOC_005575	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005575), lincRNA [TCONS_00012640]"	chr6:1323758-1323699	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_00012640	TCONS_00012640	chr6	  1323699	  1323758	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15461_PI429285431	0.90595233	A	0.90901387	A	0.99788015223851	0	lncRNA	17149-1_{1..723}	lnc-C2CD4A-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2CD4A-6:2	chr15	 61702915	 61703637	+	lnc-C2CD4A-6	lnc-C2CD4A-6:2	XLOC_011275	linc-C2CD4A-4	NA	NA	NA	inter
CUST_34808_PI429285431	2.7573907	A	3.2489347	P	0.711263482455072	0	lncRNA	36243-1_{1..432}	n341714|AJ437018|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4186|NULL|-1.1033800|-0.3592288	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341714|AJ437018|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4186|NULL|-1.1033800|-0.3592288	chr9	 88161628	 88162059	+	NA	NA	NA	NA	AGTPBP1	"hg19_refFlat_AGTPBP1:range=chr9:88162024-883274485'pad=0,hg19_refFlat_AGTPBP1:range=chr9:88162024-883274485'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00chr9:88161454-88172060"	NA	inner
LNCA_21_P0007227	0.9045053	A	0.9217943	A	0.988087698405995	0	lncRNA	TCONS_00019361	NA	NA	NA	NA	XLOC_009187	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009187), lincRNA [TCONS_00019361]"	chr11:68763937-68763996	hs|11q13.3	Agilent_HUMAN_G3V2	TCONS_00019361	TCONS_00019361	chr11	 68763937	 68763996	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32546_PI429285431	5.5575504	P	5.4760375	P	1.05812707700513	0	lncRNA	34212-1_{1..3000}	n339161|S62539|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1592|NULL|15.3458000|-0.1056939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339161|S62539|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1592|NULL|15.3458000|-0.1056939	chr2	227599937	227602936	-	NA	NA	NA	NA	IRS1	NA	chr2:227596033-227663506	inner
CUST_19484_PI429285431	0.8941928	A	1.0082079	A	0.924012901194459	0	lncRNA	21140-1_{1..543}	lnc-GLIPR1L1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GLIPR1L1-2:1	chr12	 75434738	 75435280	+	lnc-GLIPR1L1-2	lnc-GLIPR1L1-2:1	ENSG00000257434.1	RP11-81K13.1	KCNC2	"hg19_refFlat_KCNC2:range=chr12:75434877-756017635'pad=0,hg19_refFlat_KCNC2:range=chr12:75434877-756017635'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr12:75433896-75445052"	NA	inner
LNCA_21_P0001678	2.5906336	A	2.8685434	A	0.824785114110451	0	lncRNA	TCONS_00002032	NA	NA	NA	NA	XLOC_000198	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000198), lincRNA [TCONS_00002032]"	chr1:53905533-53905693	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_00002032	TCONS_00002032	chr1	 53905533	 53905693	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24139_PI429285431	0.89572686	A	0.8926362	A	1.00214457859122	0	lncRNA	25691-1_{1..2231}	lnc-EIF2C2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF2C2-2:1	chr8	141515912	141518142	-	lnc-EIF2C2-2	lnc-EIF2C2-2:1	ENSG00000259891.1	CTA-204B4.2	CHRAC1	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30chr8:141521401-141527252"	NA	inter
CUST_83_PI429201921	2.048845	A	2.1386874	A	0.939625388281099	0	lncRNA	85-1_{1..2472}	TC04002718.hg.1	TCONS_00007434-XLOC_004072 // Rinn lincRNAs // linc-PGRMC2-2 chr4:-:129489126-129491599 // chr4 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr4:-:129489126-129491599	NA	Affy_HUMAN_HTA2.0	TCONS_00007434-XLOC_004072	linc-PGRMC2-2	chr4	129489126	129491599	-	NA	NA	NA	NA	ZNF816-ZNF321P	NA	chr19:53430388-53431126	Unknown
CUST_42077_PI429285431	3.782761	P	4.134028	P	0.783895364902141	0	lncRNA	44000-1_{1..105}	ENST00000579077 ncrna:miRNA chromosome:GRCh37:X:150336694:150336798:1 gene:ENSG00000265789 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579077 ncrna:miRNA chromosome:GRCh37:X:150336694:150336798:1 gene:ENSG00000265789 gene_biotype:miRNA transcript_biotype:miRNA	chrX	150336694	150336798	+	ENSG00000265789	ENST00000579077	NA	NA	GPR50	NA	chrX:150345056-150346798	inter
CUST_45302_PI429285431	12.271017	P	10.42446	P	3.59640875064435	0	lncRNA	49746-1_{1..2116}	"gi|327199306|ref|NR_038064.1| Homo sapiens perilipin 2 (PLIN2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|327199306|ref|NR_038064.1| Homo sapiens perilipin 2 (PLIN2), transcript variant 2, non-coding RNA"	Chr9	 19115759	 19117874	-	123	NR_038064.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0010171	1.750792	A	0.9178815	A	1.78127529339333	0	lncRNA	ENST00000429512	NA	NA	NA	NA	XLOC_013988	NA	ENST00000429512	NA	NA	"BROAD Institute lincRNA (XLOC_013988), lincRNA [TCONS_00028863]"	chr21:47472611-47472765	hs|21q22.3	Agilent_HUMAN_G3V2	ENST00000429512	ENST00000429512	chr21	 47472611	 47472765	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008866	1.7811127	A	0.8786411	A	1.86926563480424	0	lncRNA	TCONS_00024199	NA	NA	NA	NA	XLOC_011565	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011565), lincRNA [TCONS_00024199]"	chr15:86629416-86629357	hs|15q25.3	Agilent_HUMAN_G3V2	TCONS_00024199	TCONS_00024199	chr15	 86629357	 86629416	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34848_PI429285431	1.4575793	A	0.8945073	A	1.47741179433774	0	lncRNA	36274-1_{1..637}	n341751|AF086175|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4225|NULL|-1.0623400|-0.2824224	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341751|AF086175|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4225|NULL|-1.0623400|-0.2824224	chr9	111781215	111781851	+	NA	NA	NA	NA	C9orf5	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50chr9:111777415-111791846"	NA	inner
CUST_9322_PI429285431	6.608324	P	6.642413	P	0.976648277574789	0	lncRNA	10830-1_{1..2368}	lnc-HES5-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HES5-1:6	chr1	  2482431	  2484798	-	lnc-HES5-1	lnc-HES5-1:6	XLOC_000678	linc-HES5-2	TNFRSF14	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90chr1:2487805-2494284"	NA	inter
CUST_22019_PI429285431	2.6819198	A	1.9504701	A	1.6603066218621	0	lncRNA	23628-1_{1..744}	lnc-ROBO3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ROBO3-1:1	chr11	124757615	124758358	+	lnc-ROBO3-1	lnc-ROBO3-1:1	ENSG00000254568.1	RP11-664I21.5	ROBO4	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ROBO4:range=chr11:124754787-1247676915'pad=0,hg19_refFlat_ROBO4:range=chr11:124754787-1247676915'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50chr11:124754114-124767685"	NA	inner
LNCA_21_P0004735	0.87705165	A	0.8738876	A	1.00219555905435	0	lncRNA	ENST00000424083	NA	NA	NA	NA	XLOC_005633	NA	ENST00000424083	NA	NA	"BROAD Institute lincRNA (XLOC_005633), lincRNA [TCONS_00011461]"	chr6:19740467-19740408	hs|6p22.3	Agilent_HUMAN_G3V2	ENST00000424083	ENST00000424083	chr6	 19740408	 19740467	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43879_PI429285431	10.81181	P	10.479864	P	1.25871005917137	0	lncRNA	48598-1_{1..2186}	"gi|376319204|ref|NR_046347.1| Homo sapiens ubiquitin specific peptidase 39 (USP39), transcript variant 6, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|376319204|ref|NR_046347.1| Homo sapiens ubiquitin specific peptidase 39 (USP39), transcript variant 6, non-coding RNA"	Chr2	 85829965	 85832150	+	10713	NR_046347.1	NA	NA	NA	NA	NA	inter
CUST_13202_PI429285431	1.9560056	A	0.874172	A	2.11672463330526	0	lncRNA	14830-1_{1..379}	lnc-NTF3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTF3-3:1	chr12	  5486943	  5487321	+	lnc-NTF3-3	lnc-NTF3-3:1	XLOC_009627	linc-NTF3	NA	NA	NA	inter
CUST_43443_PI429285431	6.460504	P	6.5492115	P	0.940364837969797	0	lncRNA	48251-1_{1..2142}	"gi|395132434|ref|NR_073019.1| Homo sapiens ST3 beta-galactoside alpha-2,3-sialyltransferase 3 (ST3GAL3), transcript variant 22, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|395132434|ref|NR_073019.1| Homo sapiens ST3 beta-galactoside alpha-2,3-sialyltransferase 3 (ST3GAL3), transcript variant 22, non-coding RNA"	Chr1	 44173204	 44175345	+	6487	NR_073019.1	NA	NA	NA	NA	NA	inter
CUST_15875_PI429285431	0.88203645	A	0.8743388	A	1.00534986408163	0	lncRNA	17566-1_{1..1405}	lnc-UGT8-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UGT8-4:1	chr4	117275036	117276440	+	lnc-UGT8-4	lnc-UGT8-4:1	XLOC_003657	linc-NDST3-4	NA	NA	NA	inter
LNCA_19_P00805833	4.6599355	P	4.9426064	P	0.822067691663163	0	lncRNA	XR_109254	XR_109254	XR_109254	NA	Hs.720980	LOC100287628	uncharacterized LOC100287628	NA	THC2492624	NA	"PREDICTED: Homo sapiens hypothetical LOC100287628, transcript variant 1 (LOC100287628), miscRNA [XR_109254]"	chr16:10481423-10481482	hs|16p13.2	Agilent_HUMAN_G3V2	XR_109254	XR_109254	chr16	 10481423	 10481482	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20429_PI429285431	1.4847891	A	1.4500616	A	1.02436332034457	0	lncRNA	22073-1_{1..647}	lnc-GPR98-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR98-3:1	chr5	 90651197	 90651843	+	lnc-GPR98-3	lnc-GPR98-3:1	ENSG00000241059.2	CTD-2061E19.6	ARRDC3	NA	chr5:90650257-90661843	inter
CUST_42594_PI429285431	0.8969893	A	0.9028277	A	0.995961307046561	0	lncRNA	45443-1_{1..72}	ENST00000516102 ncrna:snoRNA chromosome:GRCh37:7:104611734:104611805:1 gene:ENSG00000251911 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516102 ncrna:snoRNA chromosome:GRCh37:7:104611734:104611805:1 gene:ENSG00000251911 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	104611734	104611805	+	ENSG00000251911	ENST00000516102	NA	NA	NA	NA	NA	inter
CUST_41034_PI429285431	1.5132897	A	1.7923062	A	0.824152659124321	0	lncRNA	41692-2_{3001..3566}	n411676|NR_040535|lncRNA|Homosapiens||RefGeneNoncode|NR_040535||0.0040703|-0.2305527	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n411676|NR_040535|lncRNA|Homosapiens||RefGeneNoncode|NR_040535||0.0040703|-0.2305527	chr22	 39831164	 39831729	+	NA	NA	NA	NA	TAB1	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50chr22:39818164-39833132"	NA	inter
CUST_32661_PI429285431	4.331991	P	5.0006886	P	0.629074330927952	0	lncRNA	34312-1_{1..1081}	n339286|BC043527|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1718|NULL|-0.5607550|-0.2461621	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n339286|BC043527|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1718|NULL|-0.5607550|-0.2461621	chr16	 74226290	 74227370	-	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30"	NA	inter
LNCA_21_P0007001	1.4243801	A	2.4018006	A	0.507887016910454	0	lncRNA	TCONS_00018526	NA	NA	NA	NA	XLOC_008833	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008833), lincRNA [TCONS_00018526]"	chr10:63542016-63541957	hs|10q21.2	Agilent_HUMAN_G3V2	TCONS_00018526	TCONS_00018526	chr10	 63541957	 63542016	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8225_PI429285431	1.5498081	A	1.4748256	A	1.05334825868327	0	lncRNA	9816-1_{1..546}	lnc-VAPB-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VAPB-1:3	chr20	 57099687	 57100232	+	lnc-VAPB-1	lnc-VAPB-1:3	ENSG00000231290	RP5-907D15.2	APCDD1L	NA	chr20:57089687-57089949	inter
CUST_47108_PI429285431	6.993707	P	6.460955	P	1.44668617841613	0	lncRNA	51189-1_{1..1054}	"gi|298566212|ref|NR_033746.1| Homo sapiens dermokine (DMKN), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298566212|ref|NR_033746.1| Homo sapiens dermokine (DMKN), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NR_033746.1	NA	NA	NA	NA	NA	Unknown
CUST_15245_PI429285431	0.91033626	A	0.93014836	A	0.986361162128725	0	lncRNA	16916-1_{1..208}	lnc-BMP6-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BMP6-10:1	chr6	  9046653	  9046860	+	lnc-BMP6-10	lnc-BMP6-10:1	XLOC_005165	linc-GCNT2-3	NA	NA	NA	inter
CUST_35732_PI429285431	1.9700661	A	1.4016377	A	1.48290728522579	0	lncRNA	37149-2_{3001..3492}	n342899|D64053|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5407|NULL|4.8252500|-0.2845979	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342899|D64053|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5407|NULL|4.8252500|-0.2845979	chr12	 71034861	 71035352	-	NA	NA	NA	NA	PTPRR	NA	chr12:71031853-71314584	inner
LNCA_21_P0010801	6.908151	P	7.16659	P	0.835991975860297	0	lncRNA	TCONS_l2_00002836	NA	NA	NA	NA	XLOC_l2_001421	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001421), lincRNA [TCONS_l2_00002836]"	chr10:988675-988734	hs|10p15.3	Agilent_HUMAN_G3V2	TCONS_l2_00002836	TCONS_l2_00002836	chr10	   988675	   988734	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27440_PI429285431	1.3796699	A	1.7708765	A	0.762491626800247	0	lncRNA	29008-1_{1..398}	n324614|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039669|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039669|-0.4353870|-0.2925177	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324614|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039669|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039669|-0.4353870|-0.2925177	chr6	  3001122	  3001519	+	NA	NA	NA	NA	NQO2	NA	chr6:3000067-3011994	inner
CUST_16207_PI429285431	1.1392179	A	2.4323082	A	0.4080759803147	0	lncRNA	17913-1_{1..418}	lnc-AKR1C2-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AKR1C2-4:5	chr10	  4698895	  4699312	-	lnc-AKR1C2-4	lnc-AKR1C2-4:5	XLOC_008703	linc-KLF6-3	NA	NA	NA	inter
CUST_42723_PI429285431	8.413571	P	8.394585	P	1.0132470675005	0	lncRNA	45662-1_{1..135}	ENST00000365519 ncrna:snoRNA chromosome:GRCh37:17:26349356:26349490:-1 gene:ENSG00000202389 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365519 ncrna:snoRNA chromosome:GRCh37:17:26349356:26349490:-1 gene:ENSG00000202389 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 26349356	 26349490	-	ENSG00000202389	ENST00000365519	NA	NA	NA	NA	NA	inter
CUST_4479_PI429285431	1.2486352	A	0.90265125	A	1.27101754914121	0	lncRNA	4428-1_{1..419}	"transcript_id ""ENST00000541769.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000541769.1"" | genecode_v17"	chr12	127112718	127113136	-	ENSG00000255944.1	ENST00000541769.1	RP11-407A16.4	RP11-407A16.4-001	NA	NA	NA	inter
CUST_14449_PI429285431	4.834054	P	4.808777	P	1.01767506875924	0	lncRNA	16112-1_{1..600}	lnc-CACNA1E-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CACNA1E-1:1	chr1	181905960	181906559	+	lnc-CACNA1E-1	lnc-CACNA1E-1:1	XLOC_000482	linc-RGSL1-3	NA	NA	NA	inter
CUST_6927_PI429285431	3.3385525	A	3.1583505	A	1.13304251796581	0	lncRNA	6879-1_{1..853}	"transcript_id ""ENST00000426653.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426653.1"" | genecode_v17"	chr22	 20377669	 20378521	+	ENSG00000235704.1	ENST00000426653.1	AC023490.2	AC023490.2-001	TMEM191B	NA	chr22:20367669-20380440	inner
CUST_18406_PI429285431	6.475457	P	5.3436675	P	2.19130378195288	0	lncRNA	20131-1_{1..865}	lnc-FOXL2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FOXL2-1:2	chr3	138662808	138663672	-	lnc-FOXL2-1	lnc-FOXL2-1:2	ENSG00000244578	RP11-548O1.3	FOXL2	NA	chr3:138663066-138665982	inter
CUST_43391_PI429285431	9.445816	P	9.112752	P	1.25968586016088	0	lncRNA	48206-1_{1..2109}	"gi|330864682|ref|NR_038125.1| Homo sapiens capping protein (actin filament) muscle Z-line, beta (CAPZB), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|330864682|ref|NR_038125.1| Homo sapiens capping protein (actin filament) muscle Z-line, beta (CAPZB), transcript variant 4, non-coding RNA"	Chr1	 19665267	 19667375	-	832	NR_038125.1	NA	NA	NA	NA	NA	inter
CUST_35368_PI429285431	1.7116159	A	1.7971268	A	0.942450727781779	0	lncRNA	36776-1_{1..3000}	n342414|AK095365|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4906|NULL|-0.6995430|-0.2418713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342414|AK095365|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4906|NULL|-0.6995430|-0.2418713	chr12	  3427883	  3430882	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_23476_PI429285431	6.002098	P	6.19845	P	0.872754623666923	0	lncRNA	25043-1_{1..699}	lnc-AGAP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGAP2-2:1	chr12	 58114760	 58115458	-	lnc-AGAP2-2	lnc-AGAP2-2:1	ENSG00000257342.1	RP11-571M6.7	OS9	"hg19_refFlat_OS9:range=chr12:58087945-581146925'pad=0,hg19_refFlat_OS9:range=chr12:58087945-581146925'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.80chr12:58104760-58115340"	NA	inner
LNCA_21_P0004094	0.9019504	A	0.9184006	A	0.988662351346509	0	lncRNA	ENST00000502893	NA	NA	NA	NA	XLOC_004718	NA	ENST00000502893	THC2772714	NA	"BROAD Institute lincRNA (XLOC_004718), lincRNA [TCONS_00009592]"	chr5:5047159-5047100	hs|5p15.32	Agilent_HUMAN_G3V2	ENST00000502893	ENST00000502893	chr5	  5047100	  5047159	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44106_PI429285431	7.3087993	P	7.688839	P	0.768416445113078	0	lncRNA	48771-1_{1..2147}	"gi|291045134|ref|NR_033378.1| Homo sapiens uncharacterized LOC100288428 (LOC100288428), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|291045134|ref|NR_033378.1| Homo sapiens uncharacterized LOC100288428 (LOC100288428), non-coding RNA"	Chr3	  8262834	  8264980	-	100288428	NR_033378.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60"	NA	inter
CUST_29508_PI429285431	7.1727333	P	5.9294915	P	2.36729877660645	0	lncRNA	31266-1_{1..414}	n332941|AF088017|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067565|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067565|-1.3922900|-0.5481020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332941|AF088017|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067565|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067565|-1.3922900|-0.5481020	chr12	 76441477	 76441890	-	NA	NA	NA	NA	NAP1L1	NA	chr12:76438672-76451891	inner
CUST_26232_PI429285431	0.92963517	A	1.1795381	A	0.84095299586072	0	lncRNA	27739-1_{1..669}	lnc-DSC1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DSC1-1:2	chr18	 29006796	 29007464	-	lnc-DSC1-1	lnc-DSC1-1:2	ENSG00000266729.1	RP11-534N16.1	NA	"hg19_refFlat_DSG1:range=chr18:28898264-289353095'pad=0,hg19_refFlat_DSG1:range=chr18:28898264-289353095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40"	NA	inter
CUST_68_PI429201921	6.2884355	P	5.5302205	P	1.69139661913542	0	lncRNA	70-1_{1..1986}	TC0X002011.hg.1	TCONS_l2_00030464-XLOC_l2_015697 // Broad TUCP // linc-SMPX-3 chrX:-:23093811-23095798 // chrX // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrX:-:23093811-23095798	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00030464-XLOC_l2_015697	linc-SMPX-3	chrX	 23093811	 23095798	-	NA	NA	NA	NA	ST6GALNAC2	NA	chr17:74561461-74571430	Unknown
CUST_42109_PI429285431	1.6586428	A	2.0727212	A	0.750498763490613	0	lncRNA	44069-1_{1..97}	ENST00000362189 ncrna:miRNA chromosome:GRCh37:1:205417430:205417526:-1 gene:ENSG00000199059 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362189 ncrna:miRNA chromosome:GRCh37:1:205417430:205417526:-1 gene:ENSG00000199059 gene_biotype:miRNA transcript_biotype:miRNA	chr1	205417430	205417526	-	ENSG00000199059	ENST00000362189	NA	NA	NA	NA	NA	inter
CUST_37046_PI429285431	0.90940845	A	0.89904344	A	1.00721034773384	0	lncRNA	38183-1_{1..874}	n345500|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1049|NULL|-1.2598600|-0.4767572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345500|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1049|NULL|-1.2598600|-0.4767572	chr2	 63977593	 63978466	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009230	0.87999433	A	0.8838627	A	0.997322241848566	0	lncRNA	TCONS_00025335	NA	NA	NA	NA	XLOC_012147	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012147), lincRNA [TCONS_00025335]"	chr17:21548689-21548748	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_00025335	TCONS_00025335	chr17	 21548689	 21548748	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10517_PI429285431	2.5271761	A	0.9004241	A	3.08816962883147	0	lncRNA	12045-1_{1..454}	lnc-PML-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PML-1:1	chr15	 74345900	 74346353	+	lnc-PML-1	lnc-PML-1:1	XLOC_011308	linc-ISLR2-3	PML	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80chr15:74335900-74340160"	NA	inter
LNCA_21_P0007441	7.0411882	P	7.112245	P	0.951940429141708	0	lncRNA	TCONS_00019942	NA	NA	NA	NA	XLOC_009197	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009197), lincRNA [TCONS_00019942]"	chr11:69916790-69916970	hs|11q13.3	Agilent_HUMAN_G3V2	TCONS_00019942	TCONS_00019942	chr11	 69916790	 69916970	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7579_PI429285431	4.9047046	P	4.9789324	P	0.949850390675201	0	lncRNA	9215-1_{1..3000}	lnc-DEFB1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DEFB1-1:2	chr8	  6692958	  6695957	-	lnc-DEFB1-1	lnc-DEFB1-1:2	ENSG00000186530	XKR5	XKR5	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30chr8:6682958-6693166"	NA	inner
CUST_4060_PI429285431	1.8877044	A	2.439167	A	0.682328035454998	0	lncRNA	4022-1_{1..1647}	"transcript_id ""ENST00000527528.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527528.1"" | genecode_v17"	chr11	 96461317	 96462963	+	ENSG00000254587.1	ENST00000527528.1	RP11-360K13.1	RP11-360K13.1-001	NA	NA	NA	inter
CUST_43039_PI429285431	5.289839	P	5.5548735	P	0.832178834100344	0	lncRNA	46630-1_{1..166}	ENST00000411058 ncrna:snRNA chromosome:GRCh37:14:88979842:88980007:1 gene:ENSG00000222990 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000411058 ncrna:snRNA chromosome:GRCh37:14:88979842:88980007:1 gene:ENSG00000222990 gene_biotype:snRNA transcript_biotype:snRNA	chr14	 88979842	 88980007	+	ENSG00000222990	ENST00000411058	NA	NA	PTPN21	NA	chr14:88969842-88990007	inner
LNCA_21_P0008139	2.3005123	A	3.3561862	P	0.481072454398273	0	lncRNA	TCONS_00021964	NA	NA	NA	NA	XLOC_010561	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010561), lincRNA [TCONS_00021964]"	chr13:31626465-31626406	hs|13q12.3	Agilent_HUMAN_G3V2	TCONS_00021964	TCONS_00021964	chr13	 31626406	 31626465	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006101	0.87730914	A	0.8723599	A	1.0034364428292	0	lncRNA	ENST00000453455	NA	NA	NA	NA	XLOC_007826	NA	ENST00000453455	NA	NA	"BROAD Institute lincRNA (XLOC_007826), lincRNA [TCONS_00015868]"	chr9:111017076-111017017	hs|9q31.2	Agilent_HUMAN_G3V2	ENST00000453455	ENST00000453455	chr9	111017017	111017076	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013483	0.87758857	A	0.87143165	A	1.0042767711328	0	lncRNA	ENST00000518556	NA	NA	NA	NA	XLOC_l2_014217	NA	ENST00000518556	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014217), lincRNA [TCONS_l2_00027776]"	chr8:58106529-58115495	hs|8q12.1	Agilent_HUMAN_G3V2	ENST00000518556	ENST00000518556	chr8	 58106529	 58115495	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004729	0.87909824	A	0.8740103	A	1.00353291735852	0	lncRNA	THC2639686	NA	NA	NA	NA	XLOC_005602	NA	NA	THC2639686	NA	"BROAD Institute lincRNA (XLOC_005602), lincRNA [TCONS_00011450]"	NA	NA	Agilent_HUMAN_G3V2	THC2639686	THC2639686	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7136_PI429285431	0.8975755	A	0.88583106	A	1.008173850461	0	lncRNA	7072-1_{1..192}	"transcript_id ""ENST00000437686.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437686.1"" | genecode_v17"	chrY	  7567398	  7567589	-	ENSG00000225520.1	ENST00000437686.1	TTTY16	TTTY16-001	NA	NA	NA	inter
CUST_14339_PI429285431	0.92390585	A	1.1102003	A	0.878860169717107	0	lncRNA	15996-1_{1..1041}	lnc-CARD18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CARD18-1:1	chr11	105386209	105387249	-	lnc-CARD18-1	lnc-CARD18-1:1	XLOC_009540	linc-CARD18-1	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00"	NA	inter
CUST_10646_PI429285431	1.5314263	A	1.9001896	A	0.774446079201436	0	lncRNA	12178-1_{1..635}	lnc-FOXD4L3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXD4L3-2:1	chr9	 70943805	 70944439	+	lnc-FOXD4L3-2	lnc-FOXD4L3-2:1	XLOC_007390	linc-PGM5-1	NA	NA	NA	inter
CUST_39513_PI429285431	4.797577	P	4.5910134	P	1.15393631118245	0	lncRNA	40459-1_{1..1121}	n387298|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011bta.1||2.1670400|-0.0894759	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387298|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011bta.1||2.1670400|-0.0894759	chr3	195375289	195376409	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22519_PI429285431	1.0252856	A	1.094052	A	0.953452915105601	0	lncRNA	24106-1_{1..532}	lnc-TMEM18-12:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM18-12:1	chr2	   945597	   946128	-	lnc-TMEM18-12	lnc-TMEM18-12:1	ENSG00000235688.1	AC116614.1	SNTG2	NA	chr2:946554-955960	inter
CUST_8756_PI429285431	1.2516404	A	0.9122623	A	1.26521108409813	0	lncRNA	10298-1_{1..1507}	lnc-C17orf66-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf66-1:1	chr17	 34156442	 34157948	-	lnc-C17orf66-1	lnc-C17orf66-1:1	ENSG00000245021	ENST00000449789	TAF15	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30chr17:34146442-34167147"	NA	inner
LNCA_21_P0008983	0.91667473	A	0.9394786	A	0.984317827951302	0	lncRNA	TCONS_00024488	NA	NA	NA	NA	XLOC_011807	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011807), lincRNA [TCONS_00024488]"	chr16:85179684-85181246	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024488	TCONS_00024488	chr16	 85179684	 85181246	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4343_PI429285431	0.8976176	A	0.90768504	A	0.993046073573346	0	lncRNA	4298-1_{1..875}	"transcript_id ""ENST00000553197.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553197.1"" | genecode_v17"	chr12	 81672980	 81673854	+	ENSG00000257467.1	ENST00000553197.1	RP11-121G22.3	RP11-121G22.3-003	PPFIA2	NA	chr12:81662980-81716068	inner
CUST_13564_PI429285431	0.9112401	A	1.2024208	A	0.817232962263481	0	lncRNA	15205-1_{1..642}	lnc-CADM2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CADM2-4:1	chr3	 83486358	 83486999	+	lnc-CADM2-4	lnc-CADM2-4:1	XLOC_002721	linc-CADM2-3	NA	NA	NA	inter
CUST_32365_PI429285431	1.3318933	A	1.6041869	A	0.828002139117877	0	lncRNA	34043-1_{1..859}	n338951|AK129828|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1379|NULL|-0.8083620|-0.2131337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338951|AK129828|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1379|NULL|-0.8083620|-0.2131337	chr19	 55728027	 55728885	+	NA	NA	NA	NA	PTPRH	NA	chr19:55718027-55720874	inter
LNCA_21_P0001149	3.7673988	P	4.9188867	P	0.450160725894039	0	lncRNA	ENST00000445845	NA	NA	NA	NA	XLOC_000912	NA	ENST00000445845	NA	NA	"BROAD Institute lincRNA (XLOC_000912), lincRNA [TCONS_00000561]"	chr1:90421451-90421392	hs|1p22.2	Agilent_HUMAN_G3V2	ENST00000445845	ENST00000445845	chr1	 90421392	 90421451	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_195_PI429285431	0.92197716	A	1.0415666	A	0.920449553516344	0	lncRNA	185-1_{1..279}	"transcript_id ""ENST00000413004.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413004.1"" | genecode_v17"	chr1	 29471006	 29471284	-	ENSG00000225750.1	ENST00000413004.1	RP11-242O24.3	RP11-242O24.3-001	SRSF4	NA	chr1:29474250-29483506	inter
LNCA_21_P0003463	0.9111378	A	0.92980874	A	0.987141674404601	0	lncRNA	ENST00000512628	NA	NA	NA	NA	XLOC_003948	NA	ENST00000512628	THC2616848	NA	"BROAD Institute lincRNA (XLOC_003948), lincRNA [TCONS_00007759]"	chr4:55306755-55306696	hs|4q12	Agilent_HUMAN_G3V2	ENST00000512628	ENST00000512628	chr4	 55306696	 55306755	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014667	0.9047113	A	0.921894	A	0.988160504916714	0	lncRNA	XR_111050	XR_111050	XR_111050	NA	NA	LOC100509635	uncharacterized LOC100509635	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100509635 (LOC100509635), miscRNA [XR_111050]"	chr10:20578021-20581270	hs|10p12.31	Agilent_HUMAN_G3V2	XR_111050	XR_111050	chr10	 20578021	 20581270	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52090_PI429285431	7.2152553	P	7.3204026	P	0.92971001383574	0	lncRNA	55616-1_{1..1301}	hg19_lincRNAsTranscripts_TCONS_l2_00017554 range=chr22:17082828-17095989 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017554 range=chr22:17082828-17095989 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 17082828	 17084128	+	NA	NA	NA	NA	CCT8L2	NA	chr22:17072828-17073700	inter
CUST_8539_PI429285431	1.686986	A	0.9280829	A	1.6922035309058	0	lncRNA	10098-1_{1..248}	lnc-PEX2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PEX2-1:3	chr8	 77528557	 77528804	-	lnc-PEX2-1	lnc-PEX2-1:3	ENSG00000253661	RP11-65D13.1	NA	NA	NA	inter
CUST_34103_PI429285431	11.714455	P	11.654993	P	1.04207708409178	0	lncRNA	35627-1_{1..1867}	n340928|AK093427|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3393|NULL|6.8760900|-0.0819892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340928|AK093427|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3393|NULL|6.8760900|-0.0819892	chr11	   405715	   407581	-	NA	NA	NA	NA	SIGIRR	NA	chr11:405716-417397	inner
CUST_50400_PI429285431	1.8180565	A	1.1950563	A	1.5400745619718	0	lncRNA	54104-1_{1..583}	hg19_lincRNAsTranscripts_TCONS_l2_00030118 range=chrX:1874623-1882178 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030118 range=chrX:1874623-1882178 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	  1874623	  1875205	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22319_PI429285431	0.9074544	A	0.91917706	A	0.991907394148616	0	lncRNA	23918-1_{1..419}	lnc-IDS-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IDS-1:9	chrX	148614417	148614835	-	lnc-IDS-1	lnc-IDS-1:9	ENSG00000241489.2	AF011889.5	CXorf40A	NA	chrX:148622519-148624620	inter
CUST_33443_PI429285431	7.52268	P	7.148254	P	1.29632368828992	0	lncRNA	35021-1_{1..491}	n340177|BC035734|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2638|NULL|-1.1179400|-0.1161892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340177|BC035734|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2638|NULL|-1.1179400|-0.1161892	chr10	134915565	134916055	-	NA	NA	NA	NA	GPR123	NA	chr10:134905565-134926056	inner
LNCA_21_P0007211	0.8847907	A	0.89363277	A	0.993889887235596	0	lncRNA	TCONS_00019303	NA	NA	NA	NA	XLOC_009135	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009135), lincRNA [TCONS_00019303]"	chr11:57388368-57388427	hs|11q12.1	Agilent_HUMAN_G3V2	TCONS_00019303	TCONS_00019303	chr11	 57388368	 57388427	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27459_PI429285431	1.3933983	A	0.89711666	A	1.41057330286707	0	lncRNA	29029-1_{1..2423}	n324635|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000253837|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000253837|-1.2620300|-0.3083901	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324635|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000253837|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000253837|-1.2620300|-0.3083901	chr5	 43077951	 43080373	+	NA	NA	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80"	NA	inter
LNCA_19_P00808307	7.4977565	P	7.4596615	P	1.02675715440753	0	lncRNA	ENST00000465970	XR_110015	XR_110015	NA	NA	LOC100506924	NA	ENST00000465970	THC2498540	GO:0003674|GO:0005634|GO:0001558	"PREDICTED: Homo sapiens hypothetical LOC100506924 (LOC100506924), miscRNA [XR_110015]"	chr3:58613264-58613205	hs|3p14.2	Agilent_HUMAN_G3V2	ENST00000465970	ENST00000465970	chr3	 58613205	 58613264	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003011	1.0606698	A	0.8857447	A	1.12890579419437	0	lncRNA	TCONS_00006164	NA	NA	NA	NA	XLOC_002770	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002770), lincRNA [TCONS_00006164]"	chr3:116961547-116961606	hs|3q13.31	Agilent_HUMAN_G3V2	TCONS_00006164	TCONS_00006164	chr3	116961547	116961606	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008817	3.892368	P	3.6528563	P	1.18059300584133	0	lncRNA	TCONS_00023886	NA	NA	NA	NA	XLOC_011188	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011188), lincRNA [TCONS_00023886]"	chr15:26110639-26114704	hs|15q12	Agilent_HUMAN_G3V2	TCONS_00023886	TCONS_00023886	chr15	 26110639	 26114704	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00800927	0.8783438	A	0.87929666	A	0.999339745841299	0	lncRNA	TCONS_00021644	NA	NA	NA	NA	XLOC_010593	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010593), lincRNA [TCONS_00021644]"	chr13:45959742-45959683	hs|13q14.13	Agilent_HUMAN_G3V2	TCONS_00021644	TCONS_00021644	chr13	 45959683	 45959742	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003399	1.9918222	A	1.4011995	A	1.50589658638317	0	lncRNA	ENST00000505741	NA	NA	NA	NA	XLOC_003684	NA	ENST00000505741	THC2763367	NA	"BROAD Institute lincRNA (XLOC_003684), lincRNA [TCONS_00007614]"	chr4:126993079-126993138	hs|4q28.1	Agilent_HUMAN_G3V2	ENST00000505741	ENST00000505741	chr4	126993079	126993138	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43321_PI429285431	6.83672	P	6.940111	P	0.930842508194655	0	lncRNA	48152-1_{1..681}	ENST00000593780 ensembl:lincRNA chromosome:GRCh37:11:74952563:74953243:1 gene:ENSG00000261594 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000593780 ensembl:lincRNA chromosome:GRCh37:11:74952563:74953243:1 gene:ENSG00000261594 gene_biotype:lincRNA transcript_biotype:lincRNA	chr11	 74952563	 74953243	+	ENSG00000261594	ENST00000593780	NA	NA	LOC441617	NA	chr11:74951950-74954749	inner
CUST_41920_PI429285431	11.789228	P	12.931134	P	0.453160494222168	0	lncRNA	43666-1_{1..110}	ENST00000384915 ncrna:miRNA chromosome:GRCh37:11:64658609:64658718:-1 gene:ENSG00000207648 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384915 ncrna:miRNA chromosome:GRCh37:11:64658609:64658718:-1 gene:ENSG00000207648 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 64658609	 64658718	-	ENSG00000207648	ENST00000384915	NA	NA	ATG2A	NA	chr11:64662004-64668718	inter
CUST_3740_PI429285431	3.7136524	P	3.6875978	P	1.01822373456395	0	lncRNA	3709-1_{1..548}	"transcript_id ""ENST00000459633.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000459633.1"" | genecode_v17"	chr10	 80027199	 80027746	+	ENSG00000227136.2	ENST00000459633.1	LINC00595	LINC00595-004	NA	NA	NA	inter
LNCA_21_P0002299	0.87730145	A	0.87293	A	1.00303465350907	0	lncRNA	TCONS_00003901	NA	NA	NA	NA	XLOC_001704	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001704), lincRNA [TCONS_00003901]"	chr2:151070906-151070965	hs|2q23.3	Agilent_HUMAN_G3V2	TCONS_00003901	TCONS_00003901	chr2	151070906	151070965	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3254375	2.6147542	A	2.5961287	A	1.01299390940137	0	lncRNA	XR_132666	XR_132666	XR_132666	   730651	NA	LOC730651	zinc finger protein 709-like	NA	NA	NA	"PREDICTED: Homo sapiens zinc finger protein 709-like (LOC730651), miscRNA [XR_132666]"	chr19:12320469-12320528	hs|19p13.2	Agilent_HUMAN_G3V2	XR_132666	XR_132666	chr19	 12320469	 12320528	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37018_PI429285431	1.1960137	A	1.2979015	A	0.931812894613418	0	lncRNA	38156-2_{3001..3388}	n345473|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1022|NULL|-1.4863200|-0.4327791	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345473|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1022|NULL|-1.4863200|-0.4327791	chr1	173868072	173868459	+	NA	NA	NA	NA	ZBTB37	NA	chr1:173855072-173855774	inter
CUST_20367_PI429285431	3.7796874	P	3.9452622	P	0.891573227150655	0	lncRNA	22008-1_{1..307}	lnc-LAMA5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LAMA5-1:1	chr20	 60881397	 60881703	-	lnc-LAMA5-1	lnc-LAMA5-1:1	ENSG00000226332.1	RP11-157P1.4	ADRM1	NA	chr20:60878027-60883918	inner
LNCA_21_P0014905	3.725901	P	3.922739	P	0.872460668742268	0	lncRNA	XR_132903	XR_132903	XR_132903	NA	NA	LOC100652923	uncharacterized LOC100652923	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652923 (LOC100652923), miscRNA [XR_132903]"	chrX:23397756-23353333	hs|Xp22.11	Agilent_HUMAN_G3V2	XR_132903	XR_132903	chrX	 23353333	 23397756	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35312_PI429285431	1.7162241	A	1.7163023	A	0.999945797359496	0	lncRNA	36715-1_{1..1188}	n342335|L40402|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4827|NULL|-0.9689410|-0.2492718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342335|L40402|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4827|NULL|-0.9689410|-0.2492718	chr14	 75548827	 75550014	+	NA	NA	NA	NA	NEK9	NA	chr14:75548818-75559988	inner
LNCA_21_P0001186	4.7084894	P	4.861732	P	0.899227087648951	0	lncRNA	ENST00000448643	NA	NA	NA	NA	XLOC_001077	NA	ENST00000448643	NA	NA	"BROAD Institute lincRNA (XLOC_001077), lincRNA [TCONS_00000665]"	chr1:166357026-166356967	hs|1q24.1	Agilent_HUMAN_G3V2	ENST00000448643	ENST00000448643	chr1	166356967	166357026	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34584_PI429285431	1.3045989	A	1.3555393	A	0.965306902393613	0	lncRNA	36042-1_{1..3000}	n341468|BC043205|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3938|NULL|0.0608249|-0.2375133	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n341468|BC043205|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3938|NULL|0.0608249|-0.2375133	chr8	 28553717	 28556716	-	NA	NA	NA	NA	EXTL3	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60chr8:28559153-28568836"	NA	inter
CUST_9198_PI429285431	9.797874	P	9.602015	P	1.14540594768783	0	lncRNA	10710-1_{1..998}	lnc-SYNCRIP-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SYNCRIP-2:2	chr6	 86388412	 86389409	-	lnc-SYNCRIP-2	lnc-SYNCRIP-2:2	ENSG00000203875	SNHG5	NA	NA	NA	inter
CUST_21175_PI429285431	1.5411705	A	0.98195004	A	1.47347283180563	0	lncRNA	22799-1_{1..395}	lnc-ITIH3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITIH3-1:1	chr3	 52859221	 52859615	+	lnc-ITIH3-1	lnc-ITIH3-1:1	ENSG00000239799.1	ITIH4-AS1	TMEM110-MUSTN1	"hg19_refFlat_ITIH4:range=chr3:52847437-528646585'pad=0,hg19_refFlat_ITIH4:range=chr3:52847437-528646585'pad=0 3'pad=0 strand=- repeatMasking=none,-96.10chr3:52867131-52869330"	NA	inner
CUST_11993_PI429285431	1.397933	A	1.2533419	A	1.10541730283122	0	lncRNA	13574-1_{1..2018}	lnc-NCOA3-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-NCOA3-5:2	chr20	 46524340	 46526357	+	lnc-NCOA3-5	lnc-NCOA3-5:2	XLOC_013543	linc-ARFGEF2-12	NA	NA	NA	inter
CUST_35645_PI429285431	2.4029837	A	2.7452688	A	0.788790947531543	0	lncRNA	37061-1_{1..2667}	n342793|AK022986|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5296|NULL|-1.1022900|-0.2776879	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342793|AK022986|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5296|NULL|-1.1022900|-0.2776879	chr11	125827344	125830010	-	NA	NA	NA	NA	CDON	NA	chr11:125826713-125840001	inner
CUST_3695_PI429285431	0.9048296	A	1.3118489	A	0.754179949052091	0	lncRNA	3663-1_{1..597}	"transcript_id ""ENST00000449272.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449272.1"" | genecode_v17"	chr10	 55050832	 55051428	-	ENSG00000226296.1	ENST00000449272.1	RP11-71J2.1	RP11-71J2.1-001	NA	NA	NA	inter
CUST_27201_PI429285431	5.425842	P	6.64348	P	0.429986121394284	0	lncRNA	28743-1_{1..554}	n324333|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042820|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042820|-1.3487900|-0.2854703	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324333|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042820|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042820|-1.3487900|-0.2854703	chr6	155743336	155743889	-	NA	NA	NA	NA	NOX3	NA	chr6:155733336-155754009	inner
LNCA_21_P0009952	0.87725013	A	0.87526894	A	1.00137419961081	0	lncRNA	TCONS_00028137	NA	NA	NA	NA	XLOC_013495	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013495), lincRNA [TCONS_00028137]"	chr20:24011889-24011948	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028137	TCONS_00028137	chr20	 24011889	 24011948	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12986_PI429285431	1.0054891	A	1.9082514	A	0.534861661070792	0	lncRNA	14612-1_{1..1039}	lnc-UCHL5-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UCHL5-1:4	chr1	192917228	192918266	-	lnc-UCHL5-1	lnc-UCHL5-1:4	XLOC_001134	linc-FAM5C-4	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.64;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80"	NA	inter
CUST_20054_PI429285431	13.369262	P	13.286202	P	1.05926238725206	0	lncRNA	21705-1_{1..477}	lnc-ANKRD53-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD53-1:1	chr2	 71229641	 71230117	+	lnc-ANKRD53-1	lnc-ANKRD53-1:1	ENSG00000228384.2	AC007040.6	TEX261	"hg19_refFlat_TEX261:range=chr2:71215730-712218875'pad=0,hg19_refFlat_TEX261:range=chr2:71215730-712218875'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00chr2:71219641-71222001"	NA	inter
LNCA_33_P3805819	0.91829264	A	0.95550674	A	0.974534996426497	0	lncRNA	XR_110455	XR_110455	XR_110455	100505890	Hs.348526	LOC100505890	uncharacterized LOC100505890	ENST00000449805	THC2611879	NA	"PREDICTED: Homo sapiens hypothetical LOC100505890 (LOC100505890), miscRNA [XR_110455]"	chr10:106424428-106424369	hs|10q25.1	Agilent_HUMAN_G3V2	XR_110455	XR_110455	chr10	106424369	106424428	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004435	1.2955271	A	1.1399857	A	1.1138395302397	0	lncRNA	TCONS_00010456	NA	NA	NA	NA	XLOC_004975	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004975), lincRNA [TCONS_00010456]"	chr5:122082432-122081291	hs|5q23.2	Agilent_HUMAN_G3V2	TCONS_00010456	TCONS_00010456	chr5	122081291	122082432	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9430_PI429285431	6.5412498	P	6.5688834	P	0.981028123208889	0	lncRNA	10936-1_{1..676}	lnc-HNRNPA2B1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HNRNPA2B1-4:1	chr7	 25872530	 25873205	-	lnc-HNRNPA2B1-4	lnc-HNRNPA2B1-4:1	XLOC_006383	linc-NPVF-3	NA	NA	NA	inter
CUST_30184_PI429285431	0.9074977	A	0.91387874	A	0.995586767173745	0	lncRNA	31958-1_{1..215}	n334885|AJ459835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248092_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248092_07|-1.0803500|-0.4519640	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334885|AJ459835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248092_07|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248092_07|-1.0803500|-0.4519640	chr6	   729462	   729676	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009899	0.9143595	A	0.9437523	A	0.979832601750038	0	lncRNA	ENST00000441029	NA	NA	NA	NA	XLOC_013726	NA	ENST00000441029	THC2724106	NA	"BROAD Institute lincRNA (XLOC_013726), lincRNA [TCONS_00028037]"	chr20:32316825-32316766	hs|20q11.22	Agilent_HUMAN_G3V2	ENST00000441029	ENST00000441029	chr20	 32316766	 32316825	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011477	2.7885516	A	3.5491586	P	0.590247937346857	0	lncRNA	ENST00000440946	XR_110606	XR_110606	NA	Hs.617315	XLOC_l2_005461	NA	ENST00000440946	THC2530054	NA	"PREDICTED: Homo sapiens hypothetical LOC728034, transcript variant 1 (LOC728034), miscRNA [XR_110606]"	chr22:16172170-16172229	hs|22q11.1	Agilent_HUMAN_G3V2	ENST00000440946	ENST00000440946	chr22	 16172170	 16172229	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45049_PI429285431	0.9125194	A	0.9277796	A	0.989478181107282	0	lncRNA	49543-1_{1..3000}	"gi|298566295|ref|NR_033767.1| Homo sapiens forkhead box P2 (FOXP2), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|298566295|ref|NR_033767.1| Homo sapiens forkhead box P2 (FOXP2), transcript variant 8, non-coding RNA"	Chr7	114055052	114058051	+	93986	NR_033767.1	NA	NA	NA	NA	NA	inter
CUST_8638_PI429285431	8.575839	P	8.689288	P	0.924375546333266	0	lncRNA	10190-1_{1..2379}	lnc-GPR68-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR68-1:1	chr14	 91614625	 91617003	-	lnc-GPR68-1	lnc-GPR68-1:1	ENSG00000245007	ENST00000502181	C14orf159	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50chr14:91604625-91625591"	NA	inner
LNCA_21_P0002545	0.90591455	A	0.9233568	A	0.987982744556943	0	lncRNA	TCONS_00004594	NA	NA	NA	NA	XLOC_002498	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002498), lincRNA [TCONS_00004594]"	chr2:221670753-221670694	hs|2q36.1	Agilent_HUMAN_G3V2	TCONS_00004594	TCONS_00004594	chr2	221670694	221670753	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014882	3.756052	P	3.0079234	A	1.67961269775405	0	lncRNA	XR_132796	XR_132796	XR_132796	NA	NA	LOC100652983	uncharacterized LOC100652983	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652983 (LOC100652983), miscRNA [XR_132796]"	chr1:55316845-55316904	hs|1p32.3	Agilent_HUMAN_G3V2	XR_132796	XR_132796	chr1	 55316845	 55316904	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009303	1.1541028	A	2.9507277	A	0.287847203234641	0	lncRNA	TCONS_00025577	NA	NA	NA	NA	XLOC_012404	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012404), lincRNA [TCONS_00025577]"	chr17:16439169-16439110	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_00025577	TCONS_00025577	chr17	 16439110	 16439169	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44846_PI429285431	2.2481542	A	1.7900068	A	1.37377658486828	0	lncRNA	49374-1_{1..3000}	"gi|359465521|ref|NR_045597.1| Homo sapiens phosphodiesterase 10A (PDE10A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|359465521|ref|NR_045597.1| Homo sapiens phosphodiesterase 10A (PDE10A), transcript variant 2, non-coding RNA"	Chr6	165740776	165743775	-	10846	NR_045597.1	NA	NA	NA	NA	NA	inter
CUST_12868_PI429285431	4.657592	P	4.4751368	P	1.13481348548267	0	lncRNA	14495-1_{1..819}	lnc-EMX2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EMX2-1:2	chr10	119249673	119250491	+	lnc-EMX2-1	lnc-EMX2-1:2	XLOC_008632	linc-EMX2	NA	NA	NA	inter
CUST_7885_PI429285431	0.8863037	A	0.892806	A	0.995503090599983	0	lncRNA	9502-3_{6001..7109}	lnc-FH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FH-1:1	chr1	241512602	241513710	-	lnc-FH-1	lnc-FH-1:1	ENSG00000248169	ENST00000515837	RGS7	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr1:241496602-241520478"	NA	inner
CUST_29247_PI429285431	3.3587024	P	3.9487617	P	0.664315600705867	0	lncRNA	30998-1_{1..238}	n332331|FJ648812|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558865|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558865|-0.9454690|-0.1147873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332331|FJ648812|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000558865|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000558865|-0.9454690|-0.1147873	chr17	 57232317	 57232554	-	NA	NA	NA	NA	PRR11	NA	chr17:57232860-57242555	inner
LNCA_21_P0003884	6.616937	P	6.717346	P	0.932768516789835	0	lncRNA	TCONS_00009008	NA	NA	NA	NA	XLOC_003854	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003854), lincRNA [TCONS_00009008]"	chr4:2019351-2019292	hs|4p16.3	Agilent_HUMAN_G3V2	TCONS_00009008	TCONS_00009008	chr4	  2019292	  2019351	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008377	1.5367606	A	0.8892103	A	1.56650600488479	0	lncRNA	TCONS_00022612	NA	NA	NA	NA	XLOC_010915	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010915), lincRNA [TCONS_00022612]"	chr14:95797764-95797823	hs|14q32.13	Agilent_HUMAN_G3V2	TCONS_00022612	TCONS_00022612	chr14	 95797764	 95797823	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15575_PI429285431	4.6412497	P	4.482858	P	1.11604229309447	0	lncRNA	17259-1_{1..313}	lnc-GLI2-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLI2-4:3	chr2	121345789	121346101	+	lnc-GLI2-4	lnc-GLI2-4:3	XLOC_001641	linc-GLI2-3	NA	NA	NA	inter
LNCA_21_P0008336	7.879321	P	7.560297	P	1.24748632434052	0	lncRNA	TCONS_00022504	NA	NA	NA	NA	XLOC_010829	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010829), lincRNA [TCONS_00022504]"	chr14:52540524-52540583	hs|14q22.1	Agilent_HUMAN_G3V2	TCONS_00022504	TCONS_00022504	chr14	 52540524	 52540583	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32889_PI429285431	0.88854617	A	0.8826227	A	1.00411427702425	0	lncRNA	34516-1_{1..1794}	n339556|AK097516|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1998|NULL|-0.4238380|-0.1564553	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339556|AK097516|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1998|NULL|-0.4238380|-0.1564553	chr20	  3087556	  3089349	+	NA	NA	NA	NA	UBOX5	"hg19_refFlat_UBOX5:range=chr20:3090752-31040115'pad=0,hg19_refFlat_UBOX5:range=chr20:3090752-31040115'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00chr20:3088219-3140540"	NA	inner
LNCA_21_P0005619	4.261491	P	1.9350135	A	5.01579192273147	0	lncRNA	BC030605	NA	BC030605	NA	Hs.571468	XLOC_006979	NA	NA	THC2608691	NA	"BROAD Institute lincRNA (XLOC_006979), lincRNA [TCONS_00014506]"	chr8:2447140-2447081	hs|8p23.2	Agilent_HUMAN_G3V2	BC030605	BC030605	chr8	  2447081	  2447140	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006402	0.87789017	A	0.87753314	A	1.00024750496218	0	lncRNA	XR_110614	XR_110614	XR_110614	NA	Hs.128236	LOC100506641	uncharacterized LOC100506641	NA	THC2607769	NA	"PREDICTED: Homo sapiens hypothetical LOC100506641 (LOC100506641), miscRNA [XR_110614]"	chrX:39871373-39871432	hs|Xp11.4	Agilent_HUMAN_G3V2	XR_110614	XR_110614	chrX	 39871373	 39871432	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010998	3.962	P	5.258998	P	0.406972156718032	0	lncRNA	THC2636507	NA	NA	NA	NA	XLOC_l2_002469	NA	NA	THC2636507	NA	"BROAD Institute lincRNA (XLOC_l2_002469), lincRNA [TCONS_l2_00004769]"	chr11:112164722-112164781	hs|11q23.1	Agilent_HUMAN_G3V2	THC2636507	THC2636507	chr11	112164722	112164781	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29391_PI429285431	5.349888	P	5.748549	P	0.758561996289141	0	lncRNA	31143-1_{1..527}	n332694|AF002816|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061695|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061695|1.8525300|-0.0950907	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332694|AF002816|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000061695|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000061695|1.8525300|-0.0950907	chr3	184033947	184034473	+	NA	NA	NA	NA	PSMD2	NA	chr3:184023947-184026840	inner
CUST_45251_PI429285431	2.683971	A	3.4543598	P	0.586259458966029	0	lncRNA	49704-1_{1..649}	"gi|397139291|ref|XR_158838.1| PREDICTED: Homo sapiens uncharacterized LOC100996457, transcript variant 2 (LOC100996457), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139291|ref|XR_158838.1| PREDICTED: Homo sapiens uncharacterized LOC100996457, transcript variant 2 (LOC100996457), misc_RNA"	Chr8	103942723	103943371	+	100996457	XR_158838.2	NA	NA	NA	NA	NA	inter
LNCA_19_P00319630	2.8754675	A	3.0829163	P	0.866067394386479	0	lncRNA	XR_110300	XR_110300	XR_110300	NA	NA	LOC100506965	uncharacterized LOC100506965	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506965 (LOC100506965), miscRNA [XR_110300]"	chr15:25272900-25272959	hs|15q11.2	Agilent_HUMAN_G3V2	XR_110300	XR_110300	chr15	 25272900	 25272959	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013472	6.3429675	P	6.838335	P	0.709380953345667	0	lncRNA	TCONS_l2_00027727	NA	NA	NA	NA	XLOC_l2_014182	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014182), lincRNA [TCONS_l2_00027727]"	chr8:39275181-39275240	hs|8p11.22	Agilent_HUMAN_G3V2	TCONS_l2_00027727	TCONS_l2_00027727	chr8	 39275181	 39275240	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_544_PI429285431	1.8709809	A	2.3666353	A	0.709239897090147	0	lncRNA	536-1_{1..1891}	"transcript_id ""ENST00000367207.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000367207.3"" | genecode_v17"	chr1	204001575	204003465	-	ENSG00000176754.8	ENST00000367207.3	LINC00303	LINC00303-001	NA	NA	NA	inter
LNCA_21_P0003518	1.4738321	A	0.8736753	A	1.51588131184236	0	lncRNA	ENST00000514347	NA	NA	NA	NA	XLOC_004102	NA	ENST00000514347	NA	NA	"BROAD Institute lincRNA (XLOC_004102), lincRNA [TCONS_00007859]"	chr4:142161956-142161897	hs|4q31.21	Agilent_HUMAN_G3V2	ENST00000514347	ENST00000514347	chr4	142161897	142161956	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51739_PI429285431	10.235796	P	9.996675	P	1.18027332966393	0	lncRNA	55292-1_{1..758}	hg19_lincRNAsTranscripts_TCONS_l2_00012111 range=chr18:55685196-55686259 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012111 range=chr18:55685196-55686259 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 55685196	 55685953	-	NA	NA	NA	NA	NEDD4L	NA	chr18:55684889-55696259	inter
LNCA_21_P0013201	10.5251465	P	9.865759	P	1.57941193784545	0	lncRNA	TCONS_l2_00025900	NA	NA	NA	NA	XLOC_l2_013420	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013420), lincRNA [TCONS_l2_00025900]"	chr7:57068912-57069778	hs|7p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00025900	TCONS_l2_00025900	chr7	 57068912	 57069778	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35836_PI429285431	1.1779137	A	1.0437721	A	1.09743964560038	0	lncRNA	37238-1_{1..3000}	n344509|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_57|NULL|-1.4764100|-0.3572130	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344509|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_57|NULL|-1.4764100|-0.3572130	chr18	 37086725	 37089724	+	NA	NA	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60"	NA	inter
CUST_43207_PI429285431	3.1933885	P	3.4311662	P	0.848050627819501	0	lncRNA	48021-1_{1..561}	ENST00000596781 havana:sense_intronic chromosome:GRCh37:19:42928536:42929223:-1 gene:ENSG00000268605 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000596781 havana:sense_intronic chromosome:GRCh37:19:42928536:42929223:-1 gene:ENSG00000268605 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 42928536	 42929096	-	ENSG00000268605	ENST00000596781	NA	NA	LIPE	NA	chr19:42918536-42931578	inter
CUST_15902_PI429285431	0.90682316	A	1.0347065	A	0.915173168372127	0	lncRNA	17595-1_{1..352}	lnc-RP11-67H2.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-67H2.1.1-2:1	chr8	112757671	112758022	+	lnc-RP11-67H2.1.1-2	lnc-RP11-67H2.1.1-2:1	XLOC_006903	linc-UTP23-3	NA	NA	NA	inter
CUST_13292_PI429285431	0.8780962	A	0.8818156	A	0.997425228800769	0	lncRNA	14925-1_{1..614}	lnc-RP1-170O19.17.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP1-170O19.17.1-3:1	chr7	 27275467	 27276080	-	lnc-RP1-170O19.17.1-3	lnc-RP1-170O19.17.1-3:1	XLOC_006391	linc-HOXA13-1	EVX1	NA	chr7:27282164-27285492	inter
CUST_4130_PI429285431	0.90157783	A	1.2680445	A	0.775679903739363	0	lncRNA	4089-1_{1..1063}	"transcript_id ""ENST00000537295.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537295.1"" | genecode_v17"	chr12	   276022	   277084	-	ENSG00000256540.1	ENST00000537295.1	RP11-598F7.6	RP11-598F7.6-001	IQSEC3	NA	chr12:266022-287626	inner
LNCA_21_P0014939	2.9558551	A	3.1930068	P	0.848418685428119	0	lncRNA	XR_133425	XR_133425	XR_133425	NA	Hs.665280	BTBD9-AS1	BTBD9 antisense RNA 1 (non-protein coding)	ENST00000412822	THC2647427	NA	"PREDICTED: Homo sapiens BTBD9 antisense RNA 1 (non-protein coding) (BTBD9-AS1), miscRNA [XR_133425]"	chr6:38450209-38450268	hs|6p21.2	Agilent_HUMAN_G3V2	XR_133425	XR_133425	chr6	 38450209	 38450268	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_535_PI429285431	0.9015682	A	1.2550995	A	0.78266601147129	0	lncRNA	527-1_{1..2308}	"transcript_id ""ENST00000436880.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436880.2"" | genecode_v17"	chr1	198867595	198869902	-	ENSG00000229989.3	ENST00000436880.2	RP11-31E23.1	RP11-31E23.1-003	NA	NA	NA	inter
CUST_25288_PI429285431	2.892666	A	3.2401106	A	0.785975038342825	0	lncRNA	26819-1_{1..889}	lnc-EVX1-13:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EVX1-13:5	chr7	 27139398	 27140286	+	lnc-EVX1-13	lnc-EVX1-13:5	ENSG00000233429.4	HOTAIRM1	HOXA3	NA	chr7:27145809-27149758	inter
CUST_3966_PI429285431	0.8987976	A	0.90512604	A	0.99562306647272	0	lncRNA	3936-1_{1..341}	"transcript_id ""ENST00000449694.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449694.2"" | genecode_v17"	chr11	 64188007	 64188347	+	ENSG00000231492.2	ENST00000449694.2	AP003774.5	AP003774.5-001	NA	NA	NA	inter
LNCA_21_P0004032	0.9100218	A	0.928362	A	0.987368004054903	0	lncRNA	ENST00000512237	NA	NA	NA	NA	XLOC_004472	NA	ENST00000512237	NA	NA	"BROAD Institute lincRNA (XLOC_004472), lincRNA [TCONS_00009462]"	chr5:92006358-92006417	hs|5q14.3	Agilent_HUMAN_G3V2	ENST00000512237	ENST00000512237	chr5	 92006358	 92006417	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3216207	0.9079145	A	0.9258386	A	0.987652820366061	0	lncRNA	ENST00000418567	XR_108612	XR_108612	NA	Hs.485841	NA	NA	ENST00000418567	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506867 (LOC100506867), miscRNA [XR_108612]"	chr6:82554996-82554937	hs|6q14.1	Agilent_HUMAN_G3V2	ENST00000418567	ENST00000418567	chr6	 82554937	 82554996	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26154_PI429285431	0.8977018	A	0.90340185	A	0.996056821240492	0	lncRNA	27665-1_{1..430}	lnc-OPN4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OPN4-3:1	chr10	 87365940	 87366369	+	lnc-OPN4-3	lnc-OPN4-3:1	ENSG00000234942.1	RP11-93H12.2	GRID1	NA	chr10:87359312-87376263	inner
CUST_2289_PI429285431	0.9072151	A	1.0123078	A	0.92974520015433	0	lncRNA	2281-1_{1..464}	"transcript_id ""ENST00000506976.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000506976.1"" | genecode_v17"	chr5	103966088	103966551	-	ENSG00000251574.2	ENST00000506976.1	RP11-6N13.1	RP11-6N13.1-001	NA	NA	NA	inter
CUST_48255_PI429285431	2.4406128	A	2.143643	A	1.22856126264846	0	lncRNA	52118-1_{1..829}	hg19_lincRNAsTranscripts_TCONS_l2_00001953 range=chr1:997588-998668 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001953 range=chr1:997588-998668 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	   997588	   998416	+	NA	NA	NA	NA	AGRN	NA	chr1:987588-991492	inter
LNCA_21_P0007732	0.90255404	A	0.9190146	A	0.988655251782919	0	lncRNA	TCONS_00020859	NA	NA	NA	NA	XLOC_010142	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010142), lincRNA [TCONS_00020859]"	chr12:83850483-83850424	hs|12q21.31	Agilent_HUMAN_G3V2	TCONS_00020859	TCONS_00020859	chr12	 83850424	 83850483	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004789	4.899569	P	4.5830255	P	1.24534329959044	0	lncRNA	ENST00000419134	NA	NA	NA	NA	XLOC_005875	NA	ENST00000419134	THC2580107	NA	"BROAD Institute lincRNA (XLOC_005875), lincRNA [TCONS_00011593]"	chr6:149912950-149912891	hs|6q25.1	Agilent_HUMAN_G3V2	ENST00000419134	ENST00000419134	chr6	149912891	149912950	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15871_PI429285431	0.9805122	A	0.89581513	A	1.06046504676072	0	lncRNA	17561-2_{3001..3441}	lnc-PDE6B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PDE6B-1:1	chr4	   578913	   579353	+	lnc-PDE6B-1	lnc-PDE6B-1:1	XLOC_003411	linc-PDE6B	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10"	NA	inter
CUST_39841_PI429285431	10.048161	P	10.159511	P	0.925721413867423	0	lncRNA	40744-1_{1..1306}	n406456|NR_023347|lncRNA|Homosapiens||RefGeneNoncode|NR_023347||2.5877800|-0.2370246	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406456|NR_023347|lncRNA|Homosapiens||RefGeneNoncode|NR_023347||2.5877800|-0.2370246	chr17	  4046461	  4047766	+	NA	NA	NA	NA	ZZEF1	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40chr17:4036461-4046253"	NA	inner
LNCA_21_P0006718	1.5923699	A	2.4934154	A	0.535498522671657	0	lncRNA	ENST00000449585	NA	NA	NA	NA	XLOC_008681	NA	ENST00000449585	THC2778958	NA	"BROAD Institute lincRNA (XLOC_008681), lincRNA [TCONS_00017894]"	chr10:60063-60004	hs|10p15.3	Agilent_HUMAN_G3V2	ENST00000449585	ENST00000449585	chr10	    60004	    60063	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010772	0.88492453	A	0.8936859	A	0.99394548398677	0	lncRNA	ENST00000427309	NA	NA	NA	NA	XLOC_l2_001089	NA	ENST00000427309	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001089), lincRNA [TCONS_l2_00002639]"	chr1:143229917-143229858	hs|1q21.1	Agilent_HUMAN_G3V2	ENST00000427309	ENST00000427309	chr1	143229858	143229917	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38866_PI429285431	1.9915929	A	2.2976367	A	0.808856791220937	0	lncRNA	39856-1_{1..706}	n384747|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003llr.1||-1.2374300|-0.2586919	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384747|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003llr.1||-1.2374300|-0.2586919	chr5	141254323	141255028	+	NA	NA	NA	NA	PCDH1	NA	chr5:141244323-141257944	inner
CUST_15462_PI429285431	1.2642782	A	0.9134794	A	1.27526652905967	0	lncRNA	17150-1_{1..400}	lnc-C9orf102-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf102-1:1	chr9	 98579058	 98579457	+	lnc-C9orf102-1	lnc-C9orf102-1:1	XLOC_007476	linc-C9orf102-1	NA	NA	NA	inter
CUST_12174_PI429285431	7.9698052	P	7.7140355	P	1.19397257587491	0	lncRNA	13773-1_{1..925}	lnc-C2orf27B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2orf27B-3:2	chr2	132229641	132230565	-	lnc-C2orf27B-3	lnc-C2orf27B-3:2	XLOC_002323	linc-LOC150786	TUBA3D	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70chr2:132233666-132239929"	NA	inter
LNCA_21_P0002852	5.0722485	P	6.45324	P	0.383954829585125	0	lncRNA	ENST00000421735	NA	NA	NA	NA	XLOC_003123	NA	ENST00000421735	NA	NA	"BROAD Institute lincRNA (XLOC_003123), lincRNA [TCONS_00005774]"	chr3:50304132-50304073	hs|3p21.31	Agilent_HUMAN_G3V2	ENST00000421735	ENST00000421735	chr3	 50304073	 50304132	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008632	2.0726893	A	1.9763494	A	1.06905783234502	0	lncRNA	TCONS_00023410	NA	NA	NA	NA	XLOC_011256	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011256), lincRNA [TCONS_00023410]"	chr15:52981725-52981784	hs|15q21.3	Agilent_HUMAN_G3V2	TCONS_00023410	TCONS_00023410	chr15	 52981725	 52981784	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35217_PI429285431	12.678098	P	12.051356	P	1.54407411167247	0	lncRNA	36617-1_{1..1597}	n342203|CR598056|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4693|NULL|8.9975600|-0.3853513	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342203|CR598056|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4693|NULL|8.9975600|-0.3853513	chr1	   566463	   568059	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3632_PI429285431	5.590789	P	5.9993515	P	0.753373660667242	0	lncRNA	3602-1_{1..413}	"transcript_id ""ENST00000413288.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413288.1"" | genecode_v17"	chr10	 26938261	 26938673	+	ENSG00000231976.3	ENST00000413288.1	LINC00202-2	LINC00202-2-003	NA	NA	NA	inter
CUST_340_PI429285431	2.0125854	A	1.4531708	A	1.47367112684064	0	lncRNA	333-1_{1..418}	"transcript_id ""ENST00000424955.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424955.1"" | genecode_v17"	chr1	103817769	103818186	+	ENSG00000232753.1	ENST00000424955.1	RP11-347K2.1	RP11-347K2.1-001	NA	NA	NA	inter
LNCA_21_P0004815	5.728945	P	6.13779	P	0.753226153940525	0	lncRNA	TCONS_00011636	NA	NA	NA	NA	XLOC_005125	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005125), lincRNA [TCONS_00011636]"	chr6:1607083-1607142	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_00011636	TCONS_00011636	chr6	  1607083	  1607142	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21345_PI429285431	1.7429723	A	1.7287291	A	1.00992152914818	0	lncRNA	22968-1_{1..566}	lnc-TM4SF18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TM4SF18-1:1	chr3	149009514	149010079	-	lnc-TM4SF18-1	lnc-TM4SF18-1:1	ENSG00000244162.1	RP11-206M11.4	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00"	NA	inter
CUST_47800_PI429285431	6.570928	P	7.077719	P	0.703786136199582	0	lncRNA	51721-1_{1..1631}	"gi|323510641|ref|NR_037872.1| Homo sapiens tektin 4 pseudogene (LOC100233156), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|323510641|ref|NR_037872.1| Homo sapiens tektin 4 pseudogene (LOC100233156), transcript variant 2, non-coding RNA"	NT_113889.1	    38786	    40416	-	100233156	NR_037872.1	NA	NA	NA	NA	NA	Unknown
CUST_13463_PI429285431	1.7728255	A	2.5863497	A	0.56899023565033	0	lncRNA	15101-1_{1..558}	lnc-CXCL2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CXCL2-2:1	chr4	 75305996	 75306553	-	lnc-CXCL2-2	lnc-CXCL2-2:1	XLOC_003980	linc-CXCL2	AREG	NA	chr4:75310853-75316174	inter
CUST_11744_PI429285431	1.4911852	A	0.8794303	A	1.52811688636183	0	lncRNA	13324-1_{1..2790}	lnc-DDX18-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DDX18-2:1	chr2	118422019	118424808	+	lnc-DDX18-2	lnc-DDX18-2:1	XLOC_001635	linc-DDX18	NA	"hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80"	NA	inter
CUST_32124_PI429285431	0.9003573	A	0.88939434	A	1.00762789006708	0	lncRNA	33825-1_{1..1723}	n338690|BC043433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1107|NULL|-0.9010870|-0.3102046	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338690|BC043433|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1107|NULL|-0.9010870|-0.3102046	chr2	 19657980	 19659702	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00"	NA	inter
CUST_38215_PI429285431	7.409613	P	7.332966	P	1.05456425370933	0	lncRNA	39281-1_{1..3000}	n381587|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lsz.2||7.6901400|-0.0402094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381587|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lsz.2||7.6901400|-0.0402094	chr11	  1213089	  1216088	+	NA	NA	NA	NA	MUC5AC	NA	chr11:1203089-1222364	inter
CUST_4090_PI429285431	1.4597485	A	1.8791424	A	0.747738695707907	0	lncRNA	4051-1_{1..548}	"transcript_id ""ENST00000537491.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537491.1"" | genecode_v17"	chr11	115803492	115804039	+	ENSG00000257067.1	ENST00000537491.1	AP000797.4	AP000797.4-001	NA	NA	NA	inter
CUST_29992_PI429285431	0.8889384	A	0.8815129	A	1.00516023276464	0	lncRNA	31758-1_{1..430}	n334361|S76001|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216639|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216639|-0.8824290|-0.1182857	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334361|S76001|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216639|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216639|-0.8824290|-0.1182857	chr8	 26628034	 26628463	+	NA	NA	NA	NA	ADRA1A	"hg19_refFlat_ADRA1A:range=chr8:26627666-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26627666-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-101.30;hg19_refFlat_ADRA1A:range=chr8:26614276-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26614276-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-101.30;hg19_refFlat_ADRA1A:range=chr8:26623568-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26623568-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-101.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-101.30chr8:26618034-26722922"	NA	inner
LNCA_21_P0006177	2.957798	P	3.3289554	P	0.773161979825326	0	lncRNA	TCONS_00016645	NA	NA	NA	NA	XLOC_007451	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007451), lincRNA [TCONS_00016645]"	chr9:92763456-92767245	hs|9q22.2	Agilent_HUMAN_G3V2	TCONS_00016645	TCONS_00016645	chr9	 92763456	 92767245	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30137_PI429285431	0.87755615	A	0.8738896	A	1.00254469103891	0	lncRNA	31911-1_{1..256}	n334784|AJ227896|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245045|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245045|-1.4043200|-0.4899093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334784|AJ227896|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000245045|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000245045|-1.4043200|-0.4899093	chr7	116376151	116376406	+	NA	NA	NA	NA	MET	NA	chr7:116366151-116386407	inner
LNCA_21_P0008033	2.1011786	A	3.143085	P	0.485685257316586	0	lncRNA	TCONS_00022141	NA	NA	NA	NA	XLOC_010306	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010306), lincRNA [TCONS_00022141]"	chr13:23692156-23692215	hs|13q12.12	Agilent_HUMAN_G3V2	TCONS_00022141	TCONS_00022141	chr13	 23692156	 23692215	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004723	0.9185006	A	1.7772291	A	0.551438346654816	0	lncRNA	ENST00000444978	NA	NA	NA	NA	XLOC_005593	NA	ENST00000444978	NA	NA	"BROAD Institute lincRNA (XLOC_005593), lincRNA [TCONS_00011440]"	chr6:5875341-5875282	hs|6p25.1	Agilent_HUMAN_G3V2	ENST00000444978	ENST00000444978	chr6	  5875282	  5875341	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18801_PI429285431	2.055844	A	2.8575723	A	0.573661538521818	0	lncRNA	20496-1_{1..577}	lnc-SLC39A11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC39A11-2:1	chr17	 70216787	 70217363	-	lnc-SLC39A11-2	lnc-SLC39A11-2:1	ENSG00000234899	AC005152.2	NA	NA	NA	inter
CUST_47696_PI429285431	2.633974	A	0.9106453	A	3.30197386175245	0	lncRNA	51667-1_{1..3000}	"gi|385137087|ref|NR_047625.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 55, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137087|ref|NR_047625.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 55, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047625.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003856	0.9160178	A	0.95290154	A	0.974758178898307	0	lncRNA	TCONS_00008927	NA	NA	NA	NA	XLOC_003769	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003769), lincRNA [TCONS_00008927]"	chr4:166421117-166424817	hs|4q32.3	Agilent_HUMAN_G3V2	TCONS_00008927	TCONS_00008927	chr4	166421117	166424817	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3388_PI429285431	2.4361255	A	2.3900506	P	1.03245213562424	0	lncRNA	3362-1_{1..3000}	"transcript_id ""ENST00000566968.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566968.1"" | genecode_v17"	chr9	 33697457	 33700456	+	ENSG00000260947.1	ENST00000566968.1	RP11-384P7.7	RP11-384P7.7-001	NA	NA	NA	inter
CUST_480_PI429285431	1.0314298	A	1.0211763	A	1.00713250059202	0	lncRNA	471-1_{1..1923}	"transcript_id ""ENST00000413005.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413005.1"" | genecode_v17"	chr1	170567995	170569917	+	ENSG00000235303.1	ENST00000413005.1	RP1-79C4.1	RP1-79C4.1-001	NA	"hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.20"	NA	inter
LNCA_21_P0010488	0.9045581	A	1.8469541	A	0.520367945373915	0	lncRNA	ENST00000381215	NA	BC020877	NA	NA	ZNF605	zinc finger protein 605	ENST00000381215	NA	GO:0005622|GO:0006355|GO:0008270|GO:0005634|GO:0003677|GO:0046872	"BROAD Institute lincRNA (XLOC_014510), lincRNA [TCONS_00030028]"	chr12:133521453-133521394	hs|12q24.33	Agilent_HUMAN_G3V2	ENST00000381215	ENST00000381215	chr12	133521394	133521453	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003215	0.9015154	A	0.91759706	A	0.988914939838974	0	lncRNA	TCONS_00006778	NA	NA	NA	NA	XLOC_002563	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002563), lincRNA [TCONS_00006778]"	chr3:111602-111661	hs|3p26.3	Agilent_HUMAN_G3V2	TCONS_00006778	TCONS_00006778	chr3	   111602	   111661	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19473_PI429285431	8.65547	P	8.704706	P	0.966447989928474	0	lncRNA	21130-1_{1..423}	lnc-CTAGE4-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CTAGE4-1:8	chr7	143940840	143941262	+	lnc-CTAGE4-1	lnc-CTAGE4-1:8	ENSG00000244198.1	RP4-545C24.1	NA	NA	NA	inter
LNCA_21_P0001404	5.9134173	P	5.6113353	P	1.23292240040055	0	lncRNA	TCONS_00001232	NA	NA	NA	NA	XLOC_000511	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000511), lincRNA [TCONS_00001232]"	chr1:195469309-195469368	hs|1q31.3	Agilent_HUMAN_G3V2	TCONS_00001232	TCONS_00001232	chr1	195469309	195469368	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002154	4.8643875	P	4.143401	P	1.64830874580676	0	lncRNA	TCONS_00004655	NA	NA	NA	NA	XLOC_001306	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001306), lincRNA [TCONS_00004655]"	chr2:496190-496249	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00004655	TCONS_00004655	chr2	   496190	   496249	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11938_PI429285431	5.910424	P	5.8503594	P	1.04251244069652	0	lncRNA	13518-1_{1..219}	lnc-COX4NB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COX4NB-1:1	chr16	 85995480	 85995698	-	lnc-COX4NB-1	lnc-COX4NB-1:1	XLOC_012039	linc-COX4NB-1	NA	NA	NA	inter
CUST_25842_PI429285431	2.0513992	A	3.1594455	A	0.463921849485285	0	lncRNA	27363-1_{1..1262}	lnc-RP11-33N16.1.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-RP11-33N16.1.1-4:1	chr14	 90042560	 90043821	+	lnc-RP11-33N16.1.1-4	lnc-RP11-33N16.1.1-4:1	ENSG00000259073.1	CTD-2303B20.1	FOXN3	NA	chr14:90032560-90053821	inner
CUST_22160_PI429285431	0.885404	A	0.9134394	A	0.980754938507076	0	lncRNA	23762-1_{1..1010}	lnc-PAWR-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAWR-4:1	chr12	 78835921	 78836930	-	lnc-PAWR-4	lnc-PAWR-4:1	ENSG00000257879.1	RP11-90C1.1	NA	NA	NA	inter
CUST_31931_PI429285431	1.8249109	A	1.8773339	A	0.964315404641298	0	lncRNA	33659-1_{1..1283}	n338486|BC038202|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|883|NULL|-0.9011750|-0.2187145	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n338486|BC038202|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|883|NULL|-0.9011750|-0.2187145	chr19	 28982770	 28984052	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004965	0.8799705	A	0.8832799	A	0.997708727701603	0	lncRNA	TCONS_00012007	NA	NA	NA	NA	XLOC_005523	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005523), lincRNA [TCONS_00012007]"	chr6:159803762-159814275	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_00012007	TCONS_00012007	chr6	159803762	159814275	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005947	3.6167865	P	3.7654285	P	0.902099203542353	0	lncRNA	TCONS_00015342	NA	NA	NA	NA	XLOC_006916	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006916), lincRNA [TCONS_00015342]"	chr8:125952543-125952602	hs|8q24.13	Agilent_HUMAN_G3V2	TCONS_00015342	TCONS_00015342	chr8	125952543	125952602	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31714_PI429285431	0.90177083	A	0.9093049	A	0.994791392703577	0	lncRNA	33457-1_{1..3000}	n338243|BC044788|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|636|NULL|-0.9029630|-0.4234416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338243|BC044788|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|636|NULL|-0.9029630|-0.4234416	chr14	 30166404	 30169403	-	NA	NA	NA	NA	PRKD1	NA	chr14:30156404-30180138	inner
LNCA_21_P0004351	1.1638609	A	0.8779878	A	1.21914785265488	0	lncRNA	TCONS_00010241	NA	NA	NA	NA	XLOC_004701	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004701), lincRNA [TCONS_00010241]"	chr5:1159690-1159631	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00010241	TCONS_00010241	chr5	  1159631	  1159690	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001930	0.87802994	A	0.87755865	A	1.00032672669827	0	lncRNA	ENST00000432599	NA	NA	NA	NA	XLOC_001714	NA	ENST00000432599	NA	NA	"BROAD Institute lincRNA (XLOC_001714), lincRNA [TCONS_00003038]"	chr2:155317249-155317308	hs|2q24.1	Agilent_HUMAN_G3V2	ENST00000432599	ENST00000432599	chr2	155317249	155317308	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6633_PI429285431	2.1278214	A	2.1534941	A	0.982362435674478	0	lncRNA	6579-1_{1..358}	"transcript_id ""ENST00000450640.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450640.1"" | genecode_v17"	chr20	  5488521	  5488878	-	ENSG00000225640.1	ENST00000450640.1	RP5-1022P6.4	RP5-1022P6.4-001	NA	NA	NA	inter
LNCA_19_P00316050	2.1177485	A	3.0254436	P	0.533036008267497	0	lncRNA	XR_108813	XR_108813	XR_108813	NA	NA	LOC100506860	NA	NA	THC2534609	NA	"PREDICTED: Homo sapiens hypothetical LOC100506860, transcript variant 1 (LOC100506860), miscRNA [XR_108813]"	chr7:130598195-130598254	hs|7q32.3	Agilent_HUMAN_G3V2	XR_108813	XR_108813	chr7	130598195	130598254	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8707_PI429285431	2.4492002	A	2.992506	A	0.686196750923376	0	lncRNA	10251-3_{6001..6511}	lnc-TOP3A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TOP3A-1:1	chr17	 18266512	 18267022	-	lnc-TOP3A-1	lnc-TOP3A-1:1	ENSG00000249596	ENST00000503497	SHMT1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MYO15A:range=chr17:18022115-180821845'pad=0,hg19_refFlat_MYO15A:range=chr17:18022115-180821845'pad=0 3'pad=0 strand=+ repeatMasking=none,-112.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60chr17:18250512-18266856"	NA	inner
CUST_2569_PI429285431	2.0998876	A	2.8231483	A	0.605726863378833	0	lncRNA	2557-1_{1..2123}	"transcript_id ""ENST00000569267.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000569267.1"" | genecode_v17"	chr6	 81176675	 81178797	+	ENSG00000260645.1	ENST00000569267.1	RP11-250B2.5	RP11-250B2.5-001	NA	NA	NA	inter
CUST_26840_PI429285431	0.8952249	A	0.8824693	A	1.00888070975829	0	lncRNA	28354-1_{1..611}	n323911|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055733|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055733|-1.3000800|-0.2778888	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323911|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055733|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055733|-1.3000800|-0.2778888	chrX	 10170378	 10170988	+	NA	NA	NA	NA	CLCN4	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.52;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10chrX:10160378-10205700"	NA	inner
LNCA_21_P0005723	3.4318373	P	2.9741063	P	1.37338013377596	0	lncRNA	TCONS_00014763	NA	NA	NA	NA	XLOC_006846	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006846), lincRNA [TCONS_00014763]"	chr8:75019038-75019097	hs|8q21.11	Agilent_HUMAN_G3V2	TCONS_00014763	TCONS_00014763	chr8	 75019038	 75019097	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7281_PI429285431	1.6568615	A	1.6513073	A	1.0038572983702	0	lncRNA	8168-1_{1..288}	"transcript_id ""ENST00000481676.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000481676.2"" | genecode_v17"	chr11	   440406	   440693	-	ENSG00000243562.2	ENST00000481676.2	RN7SL838P	RN7SL838P-201	ANO9	"hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr11:430406-442011"	NA	inner
CUST_17162_PI429285431	3.7947133	P	4.172487	P	0.769624323273702	0	lncRNA	18871-1_{1..376}	lnc-SLC25A37-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A37-1:1	chr8	 23336717	 23337092	+	lnc-SLC25A37-1	lnc-SLC25A37-1:1	XLOC_006743	linc-SLC25A37	NA	"hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.01;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-24.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00"	NA	inter
CUST_13495_PI429285431	1.6536582	A	1.8139757	A	0.894828120647447	0	lncRNA	15135-1_{1..287}	lnc-ANXA1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANXA1-2:2	chr9	 76027024	 76027310	+	lnc-ANXA1-2	lnc-ANXA1-2:2	XLOC_007402	linc-RORB-7	NA	NA	NA	inter
CUST_9866_PI429285431	0.8982196	A	0.9036901	A	0.996215318378045	0	lncRNA	11389-1_{1..1247}	lnc-SYCP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYCP3-1:1	chr12	102090827	102092073	-	lnc-SYCP3-1	lnc-SYCP3-1:1	XLOC_010172	linc-ARL1-2	CHPT1	NA	chr12:102091417-102101162	inter
CUST_15282_PI429285431	9.807611	M	11.890486	M	0.236043555517214	0	lncRNA	16957-1_{1..545}	lnc-GPC6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPC6-1:2	chr13	 93686167	 93686711	+	lnc-GPC6-1	lnc-GPC6-1:2	XLOC_010471	linc-GPC6	NA	NA	NA	inter
CUST_48062_PI429285431	0.88221836	A	0.882577	A	0.999751440591174	0	lncRNA	51938-2_{3001..5043}	"gi|410170074|ref|XR_172452.1| PREDICTED: Homo sapiens uncharacterized LOC101060760 (LOC101060760), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170074|ref|XR_172452.1| PREDICTED: Homo sapiens uncharacterized LOC101060760 (LOC101060760), misc_RNA"	NA	NA	NA	NA	NA	XR_172452.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010276	4.005148	P	3.7593818	P	1.1857223282752	0	lncRNA	TCONS_00029113	NA	NA	NA	NA	XLOC_014060	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014060), lincRNA [TCONS_00029113]"	chr21:34856085-34854878	hs|21q22.11	Agilent_HUMAN_G3V2	TCONS_00029113	TCONS_00029113	chr21	 34854878	 34856085	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52147_PI429285431	4.949117	P	5.546341	P	0.66102466063007	0	lncRNA	55671-1_{1..1145}	hg19_lincRNAsTranscripts_TCONS_l2_00017628 range=chr22:21419901-21424360 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017628 range=chr22:21419901-21424360 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 21419901	 21421045	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011063	7.201433	P	7.3408513	P	0.907885144191035	0	lncRNA	TCONS_l2_00005873	NA	NA	NA	NA	XLOC_l2_003133	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003133), lincRNA [TCONS_l2_00005873]"	chr12:105907499-105939121	hs|12q23.3	Agilent_HUMAN_G3V2	TCONS_l2_00005873	TCONS_l2_00005873	chr12	105907499	105939121	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39676_PI429285431	2.4743876	A	2.355795	A	1.08567523119831	0	lncRNA	40617-1_{1..805}	n405306|NR_001435_7|lncRNA|Homosapiens||RefGeneNoncode|NR_001435_7||-1.2402500|-0.1923578	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405306|NR_001435_7|lncRNA|Homosapiens||RefGeneNoncode|NR_001435_7||-1.2402500|-0.1923578	chr6	  4560770	  4561574	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19527_PI429285431	3.8585835	P	4.408977	P	0.682833857708429	0	lncRNA	21183-1_{1..487}	lnc-AL391421.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL391421.1-1:1	chr10	 79689347	 79689833	+	lnc-AL391421.1-1	lnc-AL391421.1-1:1	ENSG00000233871.1	RP11-126H7.3	DLG5	NA	chr10:79679347-79686348	inter
LNCA_21_P0002928	1.6508073	A	0.87534964	A	1.71173297100272	0	lncRNA	ENST00000449023	NA	NA	NA	NA	XLOC_002573	NA	ENST00000449023	THC2680209	NA	"BROAD Institute lincRNA (XLOC_002573), lincRNA [TCONS_00005944]"	chr3:9298545-9298604	hs|3p25.3	Agilent_HUMAN_G3V2	ENST00000449023	ENST00000449023	chr3	  9298545	  9298604	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43248_PI429285431	7.5343304	P	7.148939	P	1.30621411204633	0	lncRNA	48065-1_{1..802}	ENST00000592252 havana:sense_intronic chromosome:GRCh37:19:56181998:56183435:1 gene:ENSG00000267096 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000592252 havana:sense_intronic chromosome:GRCh37:19:56181998:56183435:1 gene:ENSG00000267096 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 56181998	 56182799	+	ENSG00000267096	ENST00000592252	NA	NA	EPN1	"hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60chr19:56186561-56193435"	NA	inner
CUST_48964_PI429285431	9.023929	P	9.028802	P	0.996627991821523	0	lncRNA	52803-1_{1..944}	hg19_lincRNAsTranscripts_TCONS_l2_00019671 range=chr3:193719453-193721796 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019671 range=chr3:193719453-193721796 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	193719453	193720396	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20107_PI429285431	1.3593138	A	0.8921901	A	1.38235072738678	0	lncRNA	21755-1_{1..1668}	lnc-AGGF1-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AGGF1-3:7	chr5	 76443477	 76445144	+	lnc-AGGF1-3	lnc-AGGF1-3:7	ENSG00000250802.2	CTC-564N23.3	NA	NA	NA	inter
CUST_15651_PI429285431	0.8759998	A	0.87287664	A	1.0021671544404	0	lncRNA	17344-1_{1..513}	lnc-TBC1D1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBC1D1-1:4	chr4	 38289654	 38290166	+	lnc-TBC1D1-1	lnc-TBC1D1-1:4	XLOC_003508	linc-KLF3-5	NA	NA	NA	inter
CUST_27832_PI429285431	1.5322379	A	0.94882506	A	1.49838965058803	0	lncRNA	29419-1_{1..3000}	n325061|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078030|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078030|-0.2357620|-0.2993043	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325061|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000078030|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000078030|-0.2357620|-0.2993043	chr20	 12793849	 12796848	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-18.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.01;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90"	NA	inter
LNCA_19_P00319476	4.860736	P	5.3879795	P	0.693879235757777	0	lncRNA	XR_132900	XR_132900	XR_132900	NA	NA	LOC100507645	uncharacterized LOC100507645	NA	THC2594057	NA	"PREDICTED: Homo sapiens hypothetical LOC100507645 (LOC100507645), miscRNA [XR_132900]"	chr11:65267017-65266958	hs|11q13.1	Agilent_HUMAN_G3V2	XR_132900	XR_132900	chr11	 65266958	 65267017	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7010_PI429285431	5.516748	P	5.936494	P	0.747556227020916	0	lncRNA	6957-1_{1..370}	"transcript_id ""ENST00000430235.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430235.2"" | genecode_v17"	chrX	  1515918	  1516287	+	ENSG00000236871.2	ENST00000430235.2	LINC00106	LINC00106-001	SLC25A6	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70chrX:1505918-1511039"	NA	inter
CUST_3470_PI429285431	1.599539	A	0.9656376	A	1.55175565125316	0	lncRNA	3441-1_{1..2720}	"transcript_id ""ENST00000426593.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000426593.1"" | genecode_v17"	chr9	 92782936	 92785655	-	ENSG00000227555.1	ENST00000426593.1	RP11-406A20.4	RP11-406A20.4-001	NA	NA	NA	inter
CUST_12613_PI429285431	2.1192214	A	1.146976	A	1.96189169407405	0	lncRNA	14227-1_{1..857}	lnc-KRT7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KRT7-1:2	chr12	 52617230	 52618086	+	lnc-KRT7-1	lnc-KRT7-1:2	XLOC_009756	linc-KRT7-1	KRT7	NA	chr12:52626954-52627561	inter
CUST_28237_PI429285431	2.2469068	A	2.3851504	A	0.908624681624108	0	lncRNA	29872-1_{1..799}	n325528|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255896|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255896|-0.9074150|-0.1033285	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325528|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255896|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255896|-0.9074150|-0.1033285	chr17	 73823404	 73824202	+	NA	NA	NA	NA	UNK	NA	chr17:73813404-73821886	inner
CUST_42754_PI429285431	1.4457979	A	2.7296042	A	0.410710489736217	0	lncRNA	45718-1_{1..63}	ENST00000390975 ncrna:snoRNA chromosome:GRCh37:11:74427732:74427794:-1 gene:ENSG00000212277 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390975 ncrna:snoRNA chromosome:GRCh37:11:74427732:74427794:-1 gene:ENSG00000212277 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 74427732	 74427794	-	ENSG00000212277	ENST00000390975	NA	NA	CHRDL2	NA	chr11:74417732-74437794	inner
CUST_49053_PI429285431	1.7026612	A	1.2655125	A	1.35392582233004	0	lncRNA	52881-1_{1..832}	hg19_lincRNAsTranscripts_TCONS_l2_00020933 range=chr4:185972914-186007086 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020933 range=chr4:185972914-186007086 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	185972914	185973745	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4098_PI429285431	1.4615709	A	2.209565	A	0.595430859732713	0	lncRNA	4059-1_{1..518}	"transcript_id ""ENST00000534055.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534055.1"" | genecode_v17"	chr11	119858663	119859180	-	ENSG00000254863.1	ENST00000534055.1	RP11-831A10.2	RP11-831A10.2-003	NA	NA	NA	inter
CUST_29172_PI429285431	1.3716394	A	1.2915498	A	1.05708368974905	0	lncRNA	30916-1_{1..354}	n326684|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007959|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007959|-0.8233870|-0.1231302	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326684|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000007959|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000007959|-0.8233870|-0.1231302	chr1	 20597795	 20598148	-	NA	NA	NA	NA	VWA5B1	NA	chr1:20617412-20640314	inner
CUST_4517_PI429285431	1.3111409	A	1.0987122	A	1.15863704658933	0	lncRNA	4465-2_{3001..4592}	"transcript_id ""ENST00000567788.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000567788.1"" | genecode_v17"	chr12	130520999	130522590	-	ENSG00000214039.4	ENST00000567788.1	RP11-474D1.3	RP11-474D1.3-001	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
CUST_33378_PI429285431	14.57915	P	14.965903	P	0.764849075518533	0	lncRNA	34957-1_{1..2621}	n340096|AX746544|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2552|NULL|-0.5944010|-0.1846750	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340096|AX746544|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2552|NULL|-0.5944010|-0.1846750	chr10	 87403829	 87406449	+	NA	NA	NA	NA	GRID1	"hg19_refFlat_GRID1:range=chr10:87362030-881261495'pad=0,hg19_refFlat_GRID1:range=chr10:87362030-881261495'pad=0 3'pad=0 strand=- repeatMasking=none,-96.20chr10:87393829-87417823"	NA	inner
LNCA_21_P0001757	1.3097681	A	0.90288895	A	1.32581469634373	0	lncRNA	TCONS_00002582	NA	NA	NA	NA	XLOC_001195	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001195), lincRNA [TCONS_00002582]"	chr1:212811708-212811190	hs|1q32.3	Agilent_HUMAN_G3V2	TCONS_00002582	TCONS_00002582	chr1	212811190	212811708	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26946_PI429285431	3.9597015	P	3.3340209	A	1.54293854421285	0	lncRNA	28467-1_{1..796}	n324027|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053055|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053055|-0.9626710|-0.3981952	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324027|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053055|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053055|-0.9626710|-0.3981952	chr9	 93954696	 93955491	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48379_PI429285431	7.139412	P	5.7919283	P	2.54467903848579	0	lncRNA	52232-1_{1..1492}	hg19_lincRNAsTranscripts_TCONS_l2_00001429 range=chr1:106432383-106434018 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001429 range=chr1:106432383-106434018 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	106432383	106433874	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005958	3.6620216	P	3.6149056	P	1.03319745866145	0	lncRNA	TCONS_00015381	NA	NA	NA	NA	XLOC_006962	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006962), lincRNA [TCONS_00015381]"	chr8:145705234-145705293	hs|8q24.3	Agilent_HUMAN_G3V2	TCONS_00015381	TCONS_00015381	chr8	145705234	145705293	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47273_PI429285431	4.868615	P	5.0281463	P	0.895315892195895	0	lncRNA	51344-1_{1..3000}	"gi|299829257|ref|NR_033905.1| Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 35 (DHX35), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|299829257|ref|NR_033905.1| Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 35 (DHX35), transcript variant 3, non-coding RNA"	Chr20	 37590981	 37593980	+	60625	NR_033905.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003799	0.87939847	A	0.8817028	A	0.998404035066109	0	lncRNA	TCONS_00008663	NA	NA	NA	NA	XLOC_004175	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004175), lincRNA [TCONS_00008663]"	chr4:176157810-176157751	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_00008663	TCONS_00008663	chr4	176157751	176157810	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46805_PI429285431	6.14732	P	6.242801	P	0.935960142746456	0	lncRNA	50950-1_{1..2299}	"gi|319996624|ref|NR_037711.1| Homo sapiens RAD51 homolog D (S. cerevisiae) (RAD51D), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|319996624|ref|NR_037711.1| Homo sapiens RAD51 homolog D (S. cerevisiae) (RAD51D), transcript variant 2, non-coding RNA"	Chr17	 33426811	 33429109	-	5892	NR_037711.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001822	3.7921329	P	2.8560894	A	1.91327400416499	0	lncRNA	ENST00000483023	NA	NA	NA	NA	XLOC_001340	NA	ENST00000483023	NA	NA	"BROAD Institute lincRNA (XLOC_001340), lincRNA [TCONS_00002817]"	chr2:9848483-9848542	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000483023	ENST00000483023	chr2	  9848483	  9848542	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007789	2.3108778	A	0.8956668	A	2.66698738337974	0	lncRNA	TCONS_00020981	NA	NA	NA	NA	XLOC_010244	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010244), lincRNA [TCONS_00020981]"	chr12:127216906-127216847	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020981	TCONS_00020981	chr12	127216847	127216906	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25649_PI429285431	3.706261	P	4.54527	P	0.55902743807742	0	lncRNA	27178-1_{1..526}	lnc-ALG10B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALG10B-1:1	chr12	 39303112	 39303637	+	lnc-ALG10B-1	lnc-ALG10B-1:1	ENSG00000257718.1	RP11-396F22.1	CPNE8	NA	chr12:39293112-39299420	inter
LNCA_21_P0011914	5.7895412	P	6.3469424	P	0.679525125092656	0	lncRNA	TCONS_l2_00014564	NA	NA	NA	NA	XLOC_l2_008009	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008009), lincRNA [TCONS_l2_00014564]"	chr2:47958573-47958514	hs|2p16.3	Agilent_HUMAN_G3V2	TCONS_l2_00014564	TCONS_l2_00014564	chr2	 47958514	 47958573	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23839_PI429285431	7.341036	P	7.54127	P	0.870409374544165	0	lncRNA	25402-1_{1..549}	lnc-AC127496.3-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC127496.3-6:1	chr17	 78935210	 78935758	-	lnc-AC127496.3-6	lnc-AC127496.3-6:1	ENSG00000262662.1	CTD-2561B21.3	RPTOR	"hg19_refFlat_RPTOR:range=chr17:78519430-789381305'pad=0,hg19_refFlat_RPTOR:range=chr17:78519430-789381305'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.20chr17:78925210-78940173"	NA	inner
CUST_39932_PI429285431	8.340056	P	7.8624687	P	1.39241310743454	0	lncRNA	40810-1_{1..2116}	n406816|NR_024252|lncRNA|Homosapiens||RefGeneNoncode|NR_024252||2.2384700|-0.1229460	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406816|NR_024252|lncRNA|Homosapiens||RefGeneNoncode|NR_024252||2.2384700|-0.1229460	chr3	129816624	129818739	-	NA	NA	NA	NA	ALG1L2	"hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40chr3:129806624-129817233"	NA	inter
CUST_22225_PI429285431	0.9063214	A	1.3635627	A	0.728377720914235	0	lncRNA	23825-1_{1..568}	lnc-KLHL25-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL25-4:1	chr15	 86170795	 86171362	-	lnc-KLHL25-4	lnc-KLHL25-4:1	ENSG00000259276.1	RP11-815J21.3	AKAP13	NA	chr15:86160795-86180920	inner
CUST_38932_PI429285431	2.6417718	A	3.7427003	P	0.466216348339004	0	lncRNA	39921-1_{1..2004}	n385063|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003siq.1||5.6559200|-0.1605134	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385063|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003siq.1||5.6559200|-0.1605134	chr7	   227553	   229556	-	NA	NA	NA	NA	FAM20C	NA	chr7:217553-239557	inner
CUST_11667_PI429285431	0.8877631	A	1.040016	A	0.899844176052735	0	lncRNA	13245-1_{1..670}	lnc-CDKN2AIPNL-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CDKN2AIPNL-1:2	chr5	133768452	133769121	-	lnc-CDKN2AIPNL-1	lnc-CDKN2AIPNL-1:2	XLOC_005008	linc-CDKN2AIPNL	NA	NA	NA	inter
CUST_11802_PI429285431	1.2454454	A	1.8065016	A	0.677805759049437	0	lncRNA	13383-1_{1..239}	lnc-RPLP1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPLP1-2:3	chr15	 69964065	 69964303	+	lnc-RPLP1-2	lnc-RPLP1-2:3	XLOC_011296	linc-LRRC49-2	NA	NA	NA	inter
CUST_14664_PI429285431	0.88816416	A	0.89606225	A	0.994540419163851	0	lncRNA	16333-1_{1..1296}	lnc-C12orf12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C12orf12-1:1	chr12	 91311491	 91312786	-	lnc-C12orf12-1	lnc-C12orf12-1:1	XLOC_010150	linc-ATP2B1-2	NA	NA	NA	inter
CUST_45360_PI429285431	5.269933	P	5.4796743	P	0.86469227158267	0	lncRNA	49797-1_{1..1976}	"gi|157073879|ref|NR_002836.2| Homo sapiens phosphoglucomutase 5 pseudogene 2 (PGM5P2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|157073879|ref|NR_002836.2| Homo sapiens phosphoglucomutase 5 pseudogene 2 (PGM5P2), non-coding RNA"	Chr9	 69080240	 69082215	-	595135	NR_002836.2	NA	NA	NA	NA	NA	inter
CUST_3846_PI429285431	0.88463944	A	0.8902293	A	0.996132900862017	0	lncRNA	3815-1_{1..457}	"transcript_id ""ENST00000531076.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531076.1"" | genecode_v17"	chr11	   327400	   327856	+	ENSG00000255328.1	ENST00000531076.1	RP11-326C3.12	RP11-326C3.12-002	IFITM3	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70chr11:319673-320914"	NA	inter
CUST_43507_PI429285431	4.112023	P	5.038342	P	0.526199214503348	0	lncRNA	48296-1_{1..1419}	"gi|224177489|ref|NR_026989.1| Homo sapiens uncharacterized LOC339524 (LOC339524), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224177489|ref|NR_026989.1| Homo sapiens uncharacterized LOC339524 (LOC339524), transcript variant 5, non-coding RNA"	Chr1	 87595448	 87596866	+	339524	NR_026989.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003441	0.8708774	A	0.8699275	A	1.00065863731318	0	lncRNA	ENST00000504165	NA	NA	NA	NA	XLOC_003836	NA	ENST00000504165	NA	NA	"BROAD Institute lincRNA (XLOC_003836), lincRNA [TCONS_00007702]"	chr4:189706584-189706643	hs|4q35.2	Agilent_HUMAN_G3V2	ENST00000504165	ENST00000504165	chr4	189706584	189706643	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22697_PI429285431	1.1451488	A	0.9226079	A	1.16678674334041	0	lncRNA	24280-1_{1..434}	lnc-C5orf35-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C5orf35-1:1	chr5	 56242819	 56243252	+	lnc-C5orf35-1	lnc-C5orf35-1:1	ENSG00000235635.1	AC016644.1	MIER3	"hg19_refFlat_MIER3:range=chr5:56218955-562479295'pad=0,hg19_refFlat_MIER3:range=chr5:56218955-562479295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80chr5:56232819-56247954"	NA	inner
LNCA_19_P00801490	0.9187479	A	0.95644456	A	0.97420908349695	0	lncRNA	XR_109798	XR_109798	XR_109798	NA	Hs.103159	LOC100505946	uncharacterized LOC100505946	NA	THC2626373	NA	"PREDICTED: Homo sapiens hypothetical LOC100505946 (LOC100505946), miscRNA [XR_109798]"	chr4:76007252-76007193	hs|4q13.3	Agilent_HUMAN_G3V2	XR_109798	XR_109798	chr4	 76007193	 76007252	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16338_PI429285431	0.8970366	A	0.905113	A	0.99441750646324	0	lncRNA	18039-1_{1..312}	lnc-RP11-322L20.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-322L20.1.1-3:1	chr14	 87614232	 87614543	+	lnc-RP11-322L20.1.1-3	lnc-RP11-322L20.1.1-3:1	XLOC_010895	linc-GPR65-2	NA	NA	NA	inter
LNCA_21_P0007216	3.3912516	P	3.46419	P	0.95069969321163	0	lncRNA	TCONS_00019317	NA	NA	NA	NA	XLOC_009152	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009152), lincRNA [TCONS_00019317]"	chr11:63262322-63262381	hs|11q12.3	Agilent_HUMAN_G3V2	TCONS_00019317	TCONS_00019317	chr11	 63262322	 63262381	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002219	0.91314876	A	0.93380976	A	0.985780945471916	0	lncRNA	TCONS_00003691	NA	NA	NA	NA	XLOC_001482	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001482), lincRNA [TCONS_00003691]"	chr2:56815922-56816627	hs|2p16.1	Agilent_HUMAN_G3V2	TCONS_00003691	TCONS_00003691	chr2	 56815922	 56816627	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_528_PI429285431	0.9118286	A	0.92519957	A	0.990774765844291	0	lncRNA	520-1_{1..549}	"transcript_id ""ENST00000448412.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448412.1"" | genecode_v17"	chr1	193648024	193648572	+	ENSG00000226640.1	ENST00000448412.1	RP11-21J7.1	RP11-21J7.1-001	NA	NA	NA	inter
LNCA_21_P0005037	3.0038135	P	3.2576804	P	0.838645552540879	0	lncRNA	XR_108612	XR_108612	XR_108612	NA	NA	LOC100506867	uncharacterized LOC100506867	NA	THC2650218	NA	"PREDICTED: Homo sapiens hypothetical LOC100506867 (LOC100506867), miscRNA [XR_108612]"	chr6:82648044-82555619	hs|6q14.1	Agilent_HUMAN_G3V2	XR_108612	XR_108612	chr6	 82555619	 82648044	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004549	4.3968163	P	4.4359922	P	0.973210708608545	0	lncRNA	TCONS_00010875	NA	NA	NA	NA	XLOC_004700	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004700), lincRNA [TCONS_00010875]"	chr5:1043610-1043551	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00010875	TCONS_00010875	chr5	  1043551	  1043610	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5120_PI429285431	5.8085384	P	6.0994105	P	0.817407791357762	0	lncRNA	5060-1_{1..516}	"transcript_id ""ENST00000450324.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450324.1"" | genecode_v17"	chr15	 26678521	 26679036	+	ENSG00000235160.1	ENST00000450324.1	AC009878.2	AC009878.2-001	NA	NA	NA	inter
CUST_48914_PI429285431	0.9016834	A	1.1188031	A	0.860281250357957	0	lncRNA	52756-1_{1..921}	hg19_lincRNAsTranscripts_TCONS_l2_00019510 range=chr3:127002627-127006220 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019510 range=chr3:127002627-127006220 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	127002627	127003547	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10878_PI429285431	1.6951879	A	1.1508862	A	1.4583143132725	0	lncRNA	12418-1_{1..670}	lnc-MGLL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MGLL-1:1	chr3	127403984	127404653	-	lnc-MGLL-1	lnc-MGLL-1:1	XLOC_003242	linc-TPRA1	MGLL	NA	chr3:127407909-127414145	inter
CUST_12170_PI429285431	0.90342546	A	1.1581581	A	0.838142444692019	0	lncRNA	13769-1_{1..886}	lnc-SLC39A11-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SLC39A11-3:5	chr17	 70033431	 70034316	-	lnc-SLC39A11-3	lnc-SLC39A11-3:5	XLOC_012564	linc-ABCA5-7	NA	NA	NA	inter
CUST_19266_PI429285431	2.2473955	A	2.8050888	A	0.679387556728673	0	lncRNA	20934-1_{1..377}	lnc-PIGK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PIGK-1:1	chr1	 77815115	 77815491	-	lnc-PIGK-1	lnc-PIGK-1:1	ENSG00000233099.1	RP11-375A5.1	AK5	NA	chr1:77805115-77825270	inner
LNCA_21_P0007753	0.88641715	A	0.89589953	A	0.993448867885928	0	lncRNA	TCONS_00020905	NA	NA	NA	NA	XLOC_010184	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010184), lincRNA [TCONS_00020905]"	chr12:106136634-106136575	hs|12q23.3	Agilent_HUMAN_G3V2	TCONS_00020905	TCONS_00020905	chr12	106136575	106136634	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33458_PI429285431	0.8889826	A	0.8911264	A	0.99851513457948	0	lncRNA	35033-1_{1..3000}	n340194|CR627201|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2655|NULL|-0.9697260|-0.3759112	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340194|CR627201|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2655|NULL|-0.9697260|-0.3759112	chr4	105390670	105393669	-	NA	NA	NA	NA	CXXC4	NA	chr4:105393330-105412467	inner
CUST_10979_PI429285431	2.8867683	P	3.4015121	P	0.699917216076127	0	lncRNA	12523-1_{1..288}	lnc-ZNF366-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF366-3:3	chr5	 71986350	 71986637	-	lnc-ZNF366-3	lnc-ZNF366-3:3	XLOC_004875	linc-ZNF366-4	NA	NA	NA	inter
CUST_26627_PI429285431	6.6939487	P	6.851921	P	0.896283908213792	0	lncRNA	28130-1_{1..555}	lnc-AC107021.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC107021.1-1:2	chr3	145822774	145823328	+	lnc-AC107021.1-1	lnc-AC107021.1-1:2	ENSG00000243415.2	RP11-274H2.2	PLOD2	NA	chr3:145812774-145832991	inner
LNCA_21_P0001969	6.753893	P	6.7180524	P	1.02515396476776	0	lncRNA	ENST00000451711	NA	NA	NA	NA	XLOC_001862	NA	ENST00000451711	NA	NA	"BROAD Institute lincRNA (XLOC_001862), lincRNA [TCONS_00003109]"	chr2:217733817-217733876	hs|2q35	Agilent_HUMAN_G3V2	ENST00000451711	ENST00000451711	chr2	217733817	217733876	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34337_PI429285431	4.121854	P	1.8161421	A	4.9441136268506	0	lncRNA	35830-1_{1..1479}	n341202|BC042028|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3669|NULL|-1.1990600|-0.5145587	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341202|BC042028|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3669|NULL|-1.1990600|-0.5145587	chr7	 20453913	 20455391	+	NA	NA	NA	NA	ITGB8	NA	chr7:20443913-20455382	inner
CUST_22488_PI429285431	0.881831	A	0.8788022	A	1.00210160947243	0	lncRNA	24075-1_{1..852}	lnc-RBFA-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBFA-1:3	chr18	 77837589	 77838440	+	lnc-RBFA-1	lnc-RBFA-1:3	ENSG00000261126.1	RP11-795F19.1	NA	NA	NA	inter
CUST_47140_PI429285431	10.969025	P	11.245974	P	0.825334583992306	0	lncRNA	51221-1_{1..2522}	"gi|338222099|ref|NR_040007.1| Homo sapiens cleft lip and palate associated transmembrane protein 1 (CLPTM1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338222099|ref|NR_040007.1| Homo sapiens cleft lip and palate associated transmembrane protein 1 (CLPTM1), transcript variant 4, non-coding RNA"	Chr19	 45457842	 45460363	+	1209	NR_040007.1	NA	NA	NA	NA	NA	inter
CUST_6949_PI429285431	2.6182086	A	1.4294589	A	2.27955102096712	0	lncRNA	6898-1_{1..337}	"transcript_id ""ENST00000428415.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428415.1"" | genecode_v17"	chr22	 23776358	 23776694	+	ENSG00000234928.1	ENST00000428415.1	AP000344.3	AP000344.3-002	NA	NA	NA	inter
CUST_27939_PI429285431	0.9005054	A	0.90631366	A	0.995982114345754	0	lncRNA	29540-1_{1..611}	n325183|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329963|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329963|-1.0952600|-0.1940687	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325183|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329963|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329963|-1.0952600|-0.1940687	chr2	108150635	108151245	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3197_PI429285431	0.9018796	A	0.9138744	A	0.991720305254145	0	lncRNA	3176-1_{1..995}	"transcript_id ""ENST00000519242.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000519242.1"" | genecode_v17"	chr8	 79447261	 79448255	-	ENSG00000254266.1	ENST00000519242.1	RP11-594N15.2	RP11-594N15.2-002	PKIA	NA	chr8:79437261-79480732	inner
CUST_33427_PI429285431	4.1745877	P	0.8893277	A	9.74903890598938	0	lncRNA	35005-1_{1..2195}	n340156|BX538256|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2616|NULL|-1.1738200|-0.3796923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340156|BX538256|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2616|NULL|-1.1738200|-0.3796923	chr10	120065400	120067594	-	NA	NA	NA	NA	FAM204A	NA	chr10:120068572-120077578	inter
CUST_36477_PI429285431	3.191177	P	3.6385102	P	0.733397269552522	0	lncRNA	37682-1_{1..944}	n344982|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_531|NULL|-1.1610200|-0.3613914	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344982|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_531|NULL|-1.1610200|-0.3613914	chr8	129611757	129612700	+	NA	NA	NA	NA	NA	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00"	NA	inter
LNCA_21_P0004302	0.87905145	A	0.91804236	A	0.973335506841607	0	lncRNA	ENST00000513418	NA	NA	NA	NA	SMAD5	SMAD family member 5	ENST00000513418	NA	GO:0030618|GO:0005515|GO:0005667|GO:0003700|GO:0005634|GO:0030509|GO:0005829|GO:0005622|GO:0009880|GO:0007165|GO:0005737|GO:0005654|GO:0007179|GO:0005057|GO:0016021|GO:0045893|GO:0031625	"BROAD Institute lincRNA (XLOC_004566), lincRNA [TCONS_00010102]"	chr5:135522992-135524279	hs|5q31.1	Agilent_HUMAN_G3V2	ENST00000513418	ENST00000513418	chr5	135522992	135524279	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010061	1.6236382	A	0.87318	A	1.68232705280455	0	lncRNA	TCONS_00028446	NA	NA	NA	NA	XLOC_013805	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013805), lincRNA [TCONS_00028446]"	chr20:54241738-54241679	hs|20q13.2	Agilent_HUMAN_G3V2	TCONS_00028446	TCONS_00028446	chr20	 54241679	 54241738	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35746_PI429285431	0.88810754	A	0.8854701	A	1.0018298061558	0	lncRNA	37166-1_{1..2034}	n342922|D89974|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5430|NULL|7.9887300|-0.2591370	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342922|D89974|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5430|NULL|7.9887300|-0.2591370	chr6	133065009	133067042	-	NA	NA	NA	NA	VNN2	NA	chr6:133065009-133084598	inner
CUST_22375_PI429285431	2.663705	A	2.2904437	A	1.29527757745404	0	lncRNA	23968-1_{1..551}	lnc-KLHDC10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHDC10-2:1	chr7	129666089	129666639	+	lnc-KLHDC10-2	lnc-KLHDC10-2:1	ENSG00000244036.1	RP11-306G20.1	ZC3HC1	"hg19_refFlat_ZC3HC1:range=chr7:129658504-1296912065'pad=0,hg19_refFlat_ZC3HC1:range=chr7:129658504-1296912065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70chr7:129658126-129676391"	NA	inner
LNCA_21_P0001927	0.8795696	A	0.8745804	A	1.0034642365586	0	lncRNA	ENST00000427615	NA	NA	NA	NA	XLOC_001707	NA	ENST00000427615	THC2669147	NA	"BROAD Institute lincRNA (XLOC_001707), lincRNA [TCONS_00003034]"	chr2:151491213-151491718	hs|2q23.3	Agilent_HUMAN_G3V2	ENST00000427615	ENST00000427615	chr2	151491213	151491718	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10783_PI429285431	1.3475497	A	1.2503592	A	1.06968832506082	0	lncRNA	12319-1_{1..375}	lnc-SLC9A3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC9A3-1:1	chr5	   553645	   554019	-	lnc-SLC9A3-1	lnc-SLC9A3-1:1	XLOC_004693	linc-SLC9A3-1	NA	NA	NA	inter
LNCA_21_P0011472	0.8771684	A	0.8753294	A	1.00127551043743	0	lncRNA	TCONS_l2_00010119	NA	NA	NA	NA	XLOC_l2_005457	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005457), lincRNA [TCONS_l2_00010119]"	chr16:32769667-32769726	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00010119	TCONS_l2_00010119	chr16	 32769667	 32769726	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46932_PI429285431	6.8721995	P	6.431587	P	1.35718039968515	0	lncRNA	51042-1_{1..2746}	"gi|386781703|ref|NR_048541.1| Homo sapiens signal recognition particle 68kDa (SRP68), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386781703|ref|NR_048541.1| Homo sapiens signal recognition particle 68kDa (SRP68), transcript variant 4, non-coding RNA"	Chr17	 74034856	 74037601	-	6730	NR_048541.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0006261	0.876321	A	0.8751881	A	1.00078557484327	0	lncRNA	TCONS_00016289	NA	NA	NA	NA	XLOC_007665	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007665), lincRNA [TCONS_00016289]"	chr9:32679909-32679850	hs|9p21.1	Agilent_HUMAN_G3V2	TCONS_00016289	TCONS_00016289	chr9	 32679850	 32679909	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14654_PI429285431	0.8916962	A	1.0633559	A	0.887820729938269	0	lncRNA	16323-1_{1..477}	lnc-CLMP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLMP-1:1	chr11	123082282	123082758	-	lnc-CLMP-1	lnc-CLMP-1:1	XLOC_009584	linc-ASAM-1	NA	NA	NA	inter
CUST_45271_PI429285431	3.623464	P	3.9836185	P	0.779081142427748	0	lncRNA	49721-1_{1..3000}	"gi|377520145|ref|NR_046359.1| Homo sapiens family with sequence similarity 49, member B (FAM49B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|377520145|ref|NR_046359.1| Homo sapiens family with sequence similarity 49, member B (FAM49B), transcript variant 3, non-coding RNA"	Chr8	130851839	130854838	-	51571	NR_046359.1	NA	NA	NA	NA	NA	inter
CUST_23994_PI429285431	0.9177382	A	0.9181384	A	0.99972264096947	0	lncRNA	25549-1_{1..565}	lnc-NAT9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NAT9-1:1	chr17	 72744712	 72745276	-	lnc-NAT9-1	lnc-NAT9-1:1	ENSG00000266036.1	MIR3615	SLC9A3R1	"hg19_refFlat_SLC9A3R1:range=chr17:72744986-727647955'pad=0,hg19_refFlat_SLC9A3R1:range=chr17:72744986-727647955'pad=0 3'pad=0 strand=+ repeatMasking=none,-108.40chr17:72744763-72755051"	NA	inner
CUST_21928_PI429285431	1.6256872	A	2.013783	A	0.764137517292291	0	lncRNA	23536-1_{1..554}	lnc-FBXL22-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXL22-1:1	chr15	 64005665	 64006218	+	lnc-FBXL22-1	lnc-FBXL22-1:1	ENSG00000259589.1	RP11-317G6.1	HERC1	"hg19_refFlat_HERC1:range=chr15:63901280-640678225'pad=0,hg19_refFlat_HERC1:range=chr15:63901280-640678225'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40chr15:63995665-64015957"	NA	inner
LNCA_21_P0007419	6.281288	P	7.0250816	P	0.59716702147138	0	lncRNA	TCONS_00019803	NA	NA	NA	NA	XLOC_009602	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009602), lincRNA [TCONS_00019803]"	chr11:129683923-129683864	hs|11q24.3	Agilent_HUMAN_G3V2	TCONS_00019803	TCONS_00019803	chr11	129683864	129683923	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007265	4.4787354	P	4.24547	P	1.17549255362394	0	lncRNA	TCONS_00019442	NA	NA	NA	NA	XLOC_009252	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009252), lincRNA [TCONS_00019442]"	chr11:94371513-94373044	hs|11q21	Agilent_HUMAN_G3V2	TCONS_00019442	TCONS_00019442	chr11	 94371513	 94373044	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31670_PI429285431	8.429112	P	7.7912374	P	1.55603509564063	0	lncRNA	33418-1_{1..1592}	n338193|CR622550|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|585|NULL|8.0288700|-0.0369778	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338193|CR622550|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|585|NULL|8.0288700|-0.0369778	chr22	 50964214	 50965805	-	NA	NA	NA	NA	ODF3B	NA	chr22:50968838-50971008	inner
CUST_33503_PI429285431	1.3507593	A	1.3151425	A	1.0249949487204	0	lncRNA	35075-1_{1..3000}	n340242|BC047543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2703|NULL|-1.0259500|-0.3810018	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340242|BC047543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2703|NULL|-1.0259500|-0.3810018	chr4	145427051	145430050	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3211965	10.574934	P	10.45304	P	1.088162487517	0	lncRNA	XR_132608	XR_132608	XR_132608	   647086	Hs.681104	LOC647086	chromosome 20 open reading frame 27 pseudogene	NA	NA	NA	"PREDICTED: Homo sapiens UPF0687 protein C20orf27-like (LOC647086), miscRNA [XR_132608]"	chr16:30831848-30831838	hs|16p11.2	Agilent_HUMAN_G3V2	XR_132608	XR_132608	chr16	 30831838	 30831848	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37793_PI429285431	10.193569	P	10.064722	P	1.09341949253793	0	lncRNA	38885-1_{1..312}	n346299|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1849|NULL|-1.3340800|-0.2794881	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346299|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1849|NULL|-1.3340800|-0.2794881	chr1	 28422369	 28422680	-	NA	NA	NA	NA	EYA3	NA	chr1:28412369-28415148	inter
CUST_37485_PI429285431	5.2331734	P	5.3907785	P	0.896512062694921	0	lncRNA	38585-1_{1..411}	n345945|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1494|NULL|-1.6507200|-0.2464870	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345945|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1494|NULL|-1.6507200|-0.2464870	chr1	 79928311	 79928721	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18871_PI429285431	0.90712726	A	0.91846293	A	0.992173500095783	0	lncRNA	20564-1_{1..651}	lnc-VRK2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-VRK2-5:2	chr2	 58922769	 58923419	+	lnc-VRK2-5	lnc-VRK2-5:2	ENSG00000233723	AC007092.1	NA	NA	NA	inter
LNCA_21_P0002644	4.5241055	P	5.1218996	P	0.66076349960886	0	lncRNA	TCONS_00005068	NA	NA	NA	NA	XLOC_001958	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001958), lincRNA [TCONS_00005068]"	chr2:5817102-5817043	hs|2p25.2	Agilent_HUMAN_G3V2	TCONS_00005068	TCONS_00005068	chr2	  5817043	  5817102	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29718_PI429285431	8.677101	P	8.008964	P	1.58901968818664	0	lncRNA	31480-1_{1..1186}	n333388|BC005401|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086524|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086524|4.0416800|-0.2672663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333388|BC005401|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086524|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086524|4.0416800|-0.2672663	chr2	128522019	128523204	-	NA	NA	NA	NA	WDR33	NA	chr2:128512019-128568761	inner
LNCA_21_P0008335	3.0453613	P	2.3657863	A	1.6016678542627	0	lncRNA	ENST00000553312	NA	BC055421	NA	Hs.586850	XLOC_010828	NA	ENST00000553312	THC2522835	NA	"BROAD Institute lincRNA (XLOC_010828), lincRNA [TCONS_00022502]"	chr14:52289028-52289087	hs|14q22.1	Agilent_HUMAN_G3V2	ENST00000553312	ENST00000553312	chr14	 52289028	 52289087	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32961_PI429285431	1.3454242	A	1.4466304	A	0.932253232804375	0	lncRNA	34578-1_{1..1991}	n339636|AK095172|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2080|NULL|-1.1303000|-0.3957269	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339636|AK095172|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2080|NULL|-1.1303000|-0.3957269	chr3	146222356	146224346	-	NA	NA	NA	NA	PLSCR1	NA	chr3:146232967-146234347	inter
CUST_40967_PI429285431	0.8999727	A	0.918311	A	0.987369304399321	0	lncRNA	41640-1_{1..3000}	n411033|NR_038856|lncRNA|Homosapiens||RefGeneNoncode|NR_038856||-0.8731220|-0.2216432	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n411033|NR_038856|lncRNA|Homosapiens||RefGeneNoncode|NR_038856||-0.8731220|-0.2216432	chr1	234859788	234862787	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17823_PI429285431	2.7052703	A	2.7686396	A	0.957026447921874	0	lncRNA	19559-1_{1..3000}	lnc-AL033381.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL033381.1-1:1	chr6	  1102041	  1105040	+	lnc-AL033381.1-1	lnc-AL033381.1-1:1	XLOC_005122	linc-FOXQ1-1	NA	NA	NA	inter
LNCA_21_P0011801	1.7693702	A	0.89381146	A	1.83471851523099	0	lncRNA	TCONS_l2_00013595	NA	NA	NA	NA	XLOC_l2_007286	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007286), lincRNA [TCONS_l2_00013595]"	chr2:40982274-40982333	hs|2p22.1	Agilent_HUMAN_G3V2	TCONS_l2_00013595	TCONS_l2_00013595	chr2	 40982274	 40982333	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005678	1.2170196	A	0.89056635	A	1.2539269034752	0	lncRNA	TCONS_00014663	NA	NA	NA	NA	XLOC_006762	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006762), lincRNA [TCONS_00014663]"	chr8:30759068-30759127	hs|8p12	Agilent_HUMAN_G3V2	TCONS_00014663	TCONS_00014663	chr8	 30759068	 30759127	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33091_PI429285431	2.6805336	A	2.5159523	A	1.12084073960932	0	lncRNA	34695-1_{1..2069}	n339781|BC040631|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2228|NULL|-1.0109900|-0.3269694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339781|BC040631|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2228|NULL|-1.0109900|-0.3269694	chr18	  6256745	  6258813	+	NA	NA	NA	NA	L3MBTL4	NA	chr18:6246745-6270933	inner
CUST_9702_PI429285431	1.0339869	A	2.1642747	A	0.456824585111804	0	lncRNA	11218-1_{1..488}	lnc-LRP5L-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRP5L-2:6	chr22	 25960324	 25960811	-	lnc-LRP5L-2	lnc-LRP5L-2:6	XLOC_014323	linc-LRP5L-1	ADRBK2	NA	chr22:25960861-25970429	inter
CUST_14551_PI429285431	13.438339	P	13.48169	P	0.970398348310583	0	lncRNA	16219-1_{1..1026}	lnc-SLC25A30-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC25A30-2:1	chr13	 45957917	 45958942	-	lnc-SLC25A30-2	lnc-SLC25A30-2:1	XLOC_010592	linc-TPT1-2	SLC25A30	NA	chr13:45967451-45967978	inter
CUST_12130_PI429285431	0.89660925	A	1.2197926	A	0.799304241491705	0	lncRNA	13727-1_{1..407}	lnc-TMEM14A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM14A-2:1	chr6	 52505710	 52506116	+	lnc-TMEM14A-2	lnc-TMEM14A-2:1	XLOC_005322	linc-TMEM14A-2	NA	NA	NA	inter
CUST_32991_PI429285431	4.1653285	P	4.752031	P	0.66586310094837	0	lncRNA	34606-1_{1..216}	n339672|BC071821|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2116|NULL|-1.1408700|-0.1740676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339672|BC071821|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2116|NULL|-1.1408700|-0.1740676	chr20	 37590567	 37590782	-	NA	NA	NA	NA	DHX35	NA	chr20:37590981-37600754	inter
CUST_33568_PI429285431	6.752973	P	7.0814066	P	0.796400703182441	0	lncRNA	35133-1_{1..347}	n340319|AF009303|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2780|NULL|-1.3520100|-0.3605042	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340319|AF009303|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2780|NULL|-1.3520100|-0.3605042	chr5	  8614461	  8614807	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014198	2.6691225	A	0.8794776	A	3.45729785308212	0	lncRNA	XR_108804	XR_108804	XR_108804	NA	NA	LOC100506664	uncharacterized LOC100506664	NA	THC2653230	NA	"PREDICTED: Homo sapiens hypothetical LOC100506664 (LOC100506664), miscRNA [XR_108804]"	chr7:125101920-125101979	hs|7q31.33	Agilent_HUMAN_G3V2	XR_108804	XR_108804	chr7	125101920	125101979	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012441	5.1593204	P	3.1239297	P	4.09933729402817	0	lncRNA	ENST00000463764	NA	NA	NA	NA	TRANK1	tetratricopeptide repeat and ankyrin repeat containing 1	ENST00000463764	THC2676885	GO:0004003|GO:0005488|GO:0005524|GO:0003677	"BROAD Institute lincRNA (XLOC_l2_010151), lincRNA [TCONS_l2_00019225]"	chr3:36949890-36949831	hs|3p22.2	Agilent_HUMAN_G3V2	ENST00000463764	ENST00000463764	chr3	 36949831	 36949890	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11347_PI429285431	0.87924016	A	1.0918913	A	0.862949990396115	0	lncRNA	12909-1_{1..417}	lnc-B4GALT6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-B4GALT6-2:2	chr18	 29076934	 29077350	-	lnc-B4GALT6-2	lnc-B4GALT6-2:2	XLOC_012803	linc-DSC1-3	DSG2	NA	chr18:29078027-29086959	inter
LNCA_21_P0006676	1.6019796	A	1.0898458	A	1.42615797753254	0	lncRNA	ENST00000418426	NA	NA	NA	NA	XLOC_008470	NA	ENST00000418426	THC2776102	NA	"BROAD Institute lincRNA (XLOC_008470), lincRNA [TCONS_00017820]"	chr10:44162300-44162359	hs|10q11.21	Agilent_HUMAN_G3V2	ENST00000418426	ENST00000418426	chr10	 44162300	 44162359	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005284	0.8776114	A	0.8738153	A	1.00263472080448	0	lncRNA	ENST00000438923	NA	NA	NA	NA	XLOC_006360	NA	ENST00000438923	THC2728156	NA	"BROAD Institute lincRNA (XLOC_006360), lincRNA [TCONS_00013124]"	chr7:15728779-15728720	hs|7p21.2	Agilent_HUMAN_G3V2	ENST00000438923	ENST00000438923	chr7	 15728720	 15728779	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25750_PI429285431	3.59445	P	3.838764	P	0.844217125076646	0	lncRNA	27276-1_{1..749}	lnc-ANGEL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANGEL1-2:1	chr14	 77247743	 77248491	-	lnc-ANGEL1-2	lnc-ANGEL1-2:1	ENSG00000259081.1	RP11-488C13.6	VASH1	NA	chr14:77237743-77249363	inner
CUST_45401_PI429285431	4.1189165	P	4.513972	P	0.760460121408995	0	lncRNA	49830-1_{1..2206}	"gi|397139340|ref|XR_158850.1| PREDICTED: Homo sapiens uncharacterized LOC100996569, transcript variant 1 (LOC100996569), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|397139340|ref|XR_158850.1| PREDICTED: Homo sapiens uncharacterized LOC100996569, transcript variant 1 (LOC100996569), misc_RNA"	NA	NA	NA	NA	NA	XR_158850.1	NA	NA	NA	NA	NA	Unknown
CUST_8026_PI429285431	0.88716054	A	0.88615865	A	1.00069469841998	0	lncRNA	9635-1_{1..2466}	lnc-ZNF740-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF740-2:1	chr12	 53568345	 53570810	+	lnc-ZNF740-2	lnc-ZNF740-2:1	ENSG00000251245	ENST00000503138	ZNF740	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-19.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.20chr12:53574535-53580194"	NA	inner
CUST_25786_PI429285431	7.4210367	P	7.7263136	P	0.809286873224364	0	lncRNA	27308-1_{1..2177}	lnc-ASAH2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ASAH2-1:1	chr10	 51826286	 51828462	-	lnc-ASAH2-1	lnc-ASAH2-1:1	ENSG00000235618.2	RP11-324H6.5	FAM21A	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_C15orf40:range=chr15:83657826-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83657826-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10chr10:51827684-51837563"	NA	inter
CUST_38591_PI429285431	1.8118827	A	0.9467902	A	1.82145644814979	0	lncRNA	39601-1_{1..2925}	n383662|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002soc.1||1.6300900|-0.2914175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383662|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002soc.1||1.6300900|-0.2914175	chr2	 79362628	 79365552	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11743_PI429285431	2.7138171	A	2.1825976	A	1.44515025474845	0	lncRNA	13323-1_{1..1304}	lnc-HAAO-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HAAO-1:1	chr2	 43037761	 43039064	-	lnc-HAAO-1	lnc-HAAO-1:1	XLOC_002066	linc-HAAO-3	NA	NA	NA	inter
CUST_43132_PI429285431	4.4371996	P	4.8598475	P	0.746054070938218	0	lncRNA	47946-1_{1..3000}	ENST00000576240 havana:lincRNA chromosome:GRCh37:HSCHR19_1_CTG3:20998050:21005050:1 gene:ENSG00000262975 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,ensembl.GRCh37.72,"	>ENST00000576240 havana:lincRNA chromosome:GRCh37:HSCHR19_1_CTG3:20998050:21005050:1 gene:ENSG00000262975 gene_biotype:lincRNA transcript_biotype:lincRNA	chrHSCHR19_1_CTG3	 20998050	 21001049	+	ENSG00000262975	ENST00000576240	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00"	NA	Unknown
LNCA_21_P0004814	2.6356978	A	2.303148	A	1.25923696761338	0	lncRNA	TCONS_00011633	NA	NA	NA	NA	XLOC_005123	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005123), lincRNA [TCONS_00011633]"	chr6:1490060-1490119	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_00011633	TCONS_00011633	chr6	  1490060	  1490119	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006132	1.6112056	A	3.3112717	P	0.307772001814566	0	lncRNA	TCONS_00015935	NA	NA	NA	NA	XLOC_007305	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007305), lincRNA [TCONS_00015935]"	chr9:25613745-25617672	hs|9p21.2	Agilent_HUMAN_G3V2	TCONS_00015935	TCONS_00015935	chr9	 25613745	 25617672	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43001_PI429285431	10.440272	P	10.211862	P	1.17154307514352	0	lncRNA	46167-1_{1..114}	ENST00000390981 ncrna:snoRNA chromosome:GRCh37:2:101889398:101889511:-1 gene:ENSG00000212283 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390981 ncrna:snoRNA chromosome:GRCh37:2:101889398:101889511:-1 gene:ENSG00000212283 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	101889398	101889511	-	ENSG00000212283	ENST00000390981	NA	NA	RNF149	NA	chr2:101892063-101899511	inter
CUST_20701_PI429285431	6.867535	P	7.1164804	P	0.84151132938255	0	lncRNA	22337-1_{1..519}	lnc-GNA14-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-GNA14-2:1	chr9	 79792543	 79793061	-	lnc-GNA14-2	lnc-GNA14-2:1	ENSG00000232998.1	RP11-470P4.2	VPS13A	"hg19_refFlat_VPS13A:range=chr9:79792621-799972155'pad=0,hg19_refFlat_VPS13A:range=chr9:79792621-799972155'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_VPS13A:range=chr9:79792621-799995995'pad=0,hg19_refFlat_VPS13A:range=chr9:79792621-799995995'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_VPS13A:range=chr9:79792621-800309225'pad=0,hg19_refFlat_VPS13A:range=chr9:79792621-800309225'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80chr9:79792361-79802910"	NA	inner
CUST_26163_PI429285431	2.7959018	A	0.900309	A	3.72074830312482	0	lncRNA	27674-1_{1..782}	lnc-COMMD10-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COMMD10-2:5	chr5	115834157	115834938	+	lnc-COMMD10-2	lnc-COMMD10-2:5	ENSG00000248445.1	CTB-118N6.3	SEMA6A	NA	chr5:115824157-115844850	inner
LNCA_21_P0010270	0.888735	A	0.8996738	A	0.992446473975162	0	lncRNA	TCONS_00029080	NA	NA	NA	NA	XLOC_014003	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014003), lincRNA [TCONS_00029080]"	chr21:16134142-16134083	hs|21q11.2	Agilent_HUMAN_G3V2	TCONS_00029080	TCONS_00029080	chr21	 16134083	 16134142	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43331_PI429285431	3.7529485	P	3.3071709	P	1.36204805066778	0	lncRNA	48159-1_{1..703}	ENST00000444812 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:29992263:30016127:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>ENST00000444812 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:29992263:30016127:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	chrHSCHR6_MHC_QBL	 29992263	 29992965	-	ENSG00000235814	ENST00000444812	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001675	0.88220805	A	3.0746772	P	0.218776676867158	0	lncRNA	TCONS_00001992	NA	NA	NA	NA	XLOC_000155	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000155), lincRNA [TCONS_00001992]"	chr1:40297719-40303597	hs|1p34.2	Agilent_HUMAN_G3V2	TCONS_00001992	TCONS_00001992	chr1	 40297719	 40303597	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44811_PI429285431	1.0021238	A	1.4389665	A	0.738749574782002	0	lncRNA	49345-1_{1..1479}	"gi|301129258|ref|NR_034174.1| Homo sapiens vanin 2 (VNN2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301129258|ref|NR_034174.1| Homo sapiens vanin 2 (VNN2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_034174.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008339	3.4703865	P	2.4730043	A	1.99637424911627	0	lncRNA	TCONS_00022515	NA	NA	NA	NA	XLOC_010839	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010839), lincRNA [TCONS_00022515]"	NA	NA	Agilent_HUMAN_G3V2	TCONS_00022515	TCONS_00022515	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15525_PI429285431	0.9017283	A	0.8898144	A	1.00829227824376	0	lncRNA	17211-1_{1..847}	lnc-HECA-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HECA-3:6	chr6	140414128	140414974	+	lnc-HECA-3	lnc-HECA-3:6	XLOC_005485	linc-VTA1-2	NA	NA	NA	inter
LNCA_19_P00321781	8.968383	P	8.988248	P	0.986324995407843	0	lncRNA	ENST00000554129	XR_110290	XR_110290	NA	Hs.728904	LOC100506499	NA	ENST00000554129	THC2491927	NA	"PREDICTED: Homo sapiens hypothetical LOC100506499 (LOC100506499), miscRNA [XR_110290]"	chr14:50504986-50504927	hs|14q21.3	Agilent_HUMAN_G3V2	ENST00000554129	ENST00000554129	chr14	 50504927	 50504986	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33452_PI429285431	1.7076637	A	0.8910412	A	1.76127782660672	0	lncRNA	35028-2_{3001..5648}	n340186|AK127031|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2647|NULL|-1.0542600|-0.3510595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340186|AK127031|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2647|NULL|-1.0542600|-0.3510595	chr4	 99583054	 99585701	+	NA	NA	NA	NA	TSPAN5	NA	chr4:99570054-99579812	inter
CUST_51945_PI429285431	5.806687	P	4.9541836	P	1.80563138450159	0	lncRNA	55487-1_{1..562}	hg19_lincRNAsTranscripts_TCONS_l2_00016217 range=chr20:25731898-25733683 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016217 range=chr20:25731898-25733683 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 25731898	 25732459	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15681_PI429285431	6.405694	P	6.054127	P	1.27594575827211	0	lncRNA	17367-1_{1..1062}	lnc-UQCRFS1-9:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UQCRFS1-9:13	chr19	 28284440	 28285501	-	lnc-UQCRFS1-9	lnc-UQCRFS1-9:13	XLOC_013282	linc-ZNF681-4	NA	NA	NA	inter
LNCA_21_P0005288	0.87926435	A	0.8752621	A	1.00277799981353	0	lncRNA	ENST00000414127	NA	NA	NA	NA	XLOC_006379	NA	ENST00000414127	NA	NA	"BROAD Institute lincRNA (XLOC_006379), lincRNA [TCONS_00013143]"	chr7:25360984-25360925	hs|7p15.3	Agilent_HUMAN_G3V2	ENST00000414127	ENST00000414127	chr7	 25360925	 25360984	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014355	8.831769	P	8.933166	P	0.932129948152967	0	lncRNA	XR_109425	XR_109425	XR_109425	NA	Hs.694655	LOC100134391	uncharacterized LOC100134391	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100134391 (LOC100134391), miscRNA [XR_109425]"	chr17:71747410-71747469	hs|17q25.1	Agilent_HUMAN_G3V2	XR_109425	XR_109425	chr17	 71747410	 71747469	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38264_PI429285431	7.667416	P	7.74685	P	0.946428878111634	0	lncRNA	39320-1_{1..331}	n381821|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qoa.2||1.3440100|-0.1767696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381821|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qoa.2||1.3440100|-0.1767696	chr12	  6547666	  6547996	+	NA	NA	NA	NA	CD27	NA	chr12:6554051-6557997	inter
CUST_46967_PI429285431	2.9177976	A	2.3077488	A	1.52631083644037	0	lncRNA	51071-2_{3001..3412}	"gi|221219005|ref|NR_026659.1| Homo sapiens cysteine and histidine-rich domain (CHORD) containing 1 pseudogene (LOC727896), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|221219005|ref|NR_026659.1| Homo sapiens cysteine and histidine-rich domain (CHORD) containing 1 pseudogene (LOC727896), non-coding RNA"	Chr18	  2946210	  2946621	-	727896	NR_026659.1	NA	NA	NA	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-20.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50"	NA	inter
LNCA_21_P0008521	4.2642183	P	4.915366	P	0.636773542827081	0	lncRNA	TCONS_00023036	NA	NA	NA	NA	XLOC_010908	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010908), lincRNA [TCONS_00023036]"	chr14:93358184-93359622	hs|14q32.12	Agilent_HUMAN_G3V2	TCONS_00023036	TCONS_00023036	chr14	 93358184	 93359622	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24535_PI429285431	3.3373222	P	3.9146452	P	0.670206228838603	0	lncRNA	26085-1_{1..674}	lnc-WHAMM-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WHAMM-2:6	chr15	 83425798	 83426471	+	lnc-WHAMM-2	lnc-WHAMM-2:6	ENSG00000250988.3	RP11-752G15.6	FSD2	NA	chr15:83428024-83435958	inter
CUST_20628_PI429285431	2.774746	A	2.1206589	A	1.57361989218102	0	lncRNA	22267-1_{1..586}	lnc-SWAP70-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SWAP70-2:1	chr11	  9950437	  9951022	+	lnc-SWAP70-2	lnc-SWAP70-2:1	ENSG00000255476.1	RP11-1H15.2	SBF2	NA	chr11:9940437-9960810	inner
CUST_18701_PI429285431	2.7163084	A	1.0727925	A	3.12426299036697	0	lncRNA	20399-1_{1..791}	lnc-SPRYD7-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPRYD7-1:4	chr13	 50655959	 50656749	-	lnc-SPRYD7-1	lnc-SPRYD7-1:4	ENSG00000231607	DLEU2	NA	NA	NA	inter
LNCA_21_P0013335	1.8605661	A	2.5388434	A	0.624911025779308	0	lncRNA	TCONS_l2_00026731	NA	NA	NA	NA	XLOC_l2_013910	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013910), lincRNA [TCONS_l2_00026731]"	chr7:84509669-84509610	hs|7q21.11	Agilent_HUMAN_G3V2	TCONS_l2_00026731	TCONS_l2_00026731	chr7	 84509610	 84509669	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40319_PI429285431	1.7548072	A	2.083456	A	0.796281916713558	0	lncRNA	41122-1_{1..629}	n408359|NR_029454|lncRNA|Homosapiens||RefGeneNoncode|NR_029454||1.9023700|-0.2283933	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n408359|NR_029454|lncRNA|Homosapiens||RefGeneNoncode|NR_029454||1.9023700|-0.2283933	chr16	  4838456	  4839084	+	NA	NA	NA	NA	ROGDI	NA	chr16:4846969-4852674	inner
CUST_27131_PI429285431	0.89868456	A	0.9047651	A	0.995794160264306	0	lncRNA	28667-1_{1..618}	n324247|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324434|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324434|-1.3265600|-0.3437393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324247|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324434|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324434|-1.3265600|-0.3437393	chr7	  9743475	  9744092	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30016_PI429285431	2.4206157	A	1.6112056	A	1.75249472288895	0	lncRNA	31784-1_{1..250}	n334452|U11878|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218066|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218066|-1.1362400|-0.4194605	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334452|U11878|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218066|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218066|-1.1362400|-0.4194605	chr2	218999319	218999568	+	NA	NA	NA	NA	CXCR2	NA	chr2:218990013-219001976	inner
CUST_12607_PI429285431	1.7877396	A	0.9326355	A	1.80888927375188	0	lncRNA	14220-1_{1..420}	lnc-RHD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RHD-1:1	chr1	 25535025	 25535444	+	lnc-RHD-1	lnc-RHD-1:1	XLOC_000100	linc-RHD-1	SYF2	NA	chr1:25525025-25545360	inter
CUST_36114_PI429285431	5.485939	P	4.7170663	P	1.70393783206987	0	lncRNA	37406-1_{1..1374}	n344691|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_240|NULL|-1.3289200|-0.3323178	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344691|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_240|NULL|-1.3289200|-0.3323178	chr13	 50618560	 50619933	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4541_PI429285431	0.90162086	A	0.9094134	A	0.994613184078395	0	lncRNA	4489-1_{1..615}	"transcript_id ""ENST00000537742.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000537742.2"" | genecode_v17"	chr12	133038828	133039442	+	ENSG00000256875.2	ENST00000537742.2	RP11-503G7.2	RP11-503G7.2-001	NA	NA	NA	inter
CUST_12184_PI429285431	4.620844	P	4.7959647	P	0.885693416354127	0	lncRNA	13784-1_{1..385}	lnc-TMEM132B-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132B-4:3	chr12	126651723	126652107	+	lnc-TMEM132B-4	lnc-TMEM132B-4:3	XLOC_009937	linc-TMEM132C-12	NA	NA	NA	inter
CUST_8019_PI429285431	4.634057	P	2.7298522	A	3.74302530054375	0	lncRNA	9631-1_{1..3000}	lnc-CDS1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CDS1-2:1	chr4	 85927160	 85930159	+	lnc-CDS1-2	lnc-CDS1-2:1	ENSG00000180769	NCRNA00247	NA	NA	NA	inter
CUST_31569_PI429285431	0.9095125	A	0.91681266	A	0.994952695343922	0	lncRNA	33326-1_{1..924}	n338064|BC033336|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|451|NULL|-0.8241430|-0.1500459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338064|BC033336|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|451|NULL|-0.8241430|-0.1500459	chr22	 37767728	 37768651	+	NA	NA	NA	NA	ELFN2	NA	chr22:37764000-37778896	inner
CUST_36499_PI429285431	4.5663247	P	4.5502024	P	1.01123780176788	0	lncRNA	37698-1_{1..694}	n344999|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_548|NULL|-1.4127400|-0.1991765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344999|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_548|NULL|-1.4127400|-0.1991765	chr8	 49342692	 49343385	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35931_PI429285431	5.1291103	P	4.233	P	1.86104159429052	0	lncRNA	37295-1_{1..404}	n344570|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_118|NULL|-1.3811100|-0.2740984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344570|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_118|NULL|-1.3811100|-0.2740984	chr1	173834366	173834769	+	NA	NA	NA	NA	DARS2	NA	chr1:173824366-173827682	inter
CUST_20607_PI429285431	4.2014413	P	4.5797415	P	0.769343506285252	0	lncRNA	22246-1_{1..504}	lnc-C5orf25-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C5orf25-1:1	chr5	175780258	175780761	+	lnc-C5orf25-1	lnc-C5orf25-1:1	ENSG00000250909.1	RP11-843P14.2	C5orf25	"hg19_refFlat_KIAA1191:range=chr5:175774603-1757827235'pad=0,hg19_refFlat_KIAA1191:range=chr5:175774603-1757827235'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_KIAA1191:range=chr5:175774603-1757865115'pad=0,hg19_refFlat_KIAA1191:range=chr5:175774603-1757865115'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60chr5:175770258-175772992"	NA	inner
CUST_7370_PI429285431	6.1165338	P	6.1387224	P	0.984737702125432	0	lncRNA	9016-1_{1..593}	lnc-CRYBA4-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:6	chr22	 27061495	 27062087	+	lnc-CRYBA4-1	lnc-CRYBA4-1:6	ENSG00000225783	XLOC_014192	NA	NA	NA	inter
CUST_21006_PI429285431	1.3049703	A	0.89140356	A	1.3319747557572	0	lncRNA	22635-1_{1..560}	lnc-CALML5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CALML5-2:1	chr10	  5568096	  5568655	-	lnc-CALML5-2	lnc-CALML5-2:1	ENSG00000205488.3	RP11-116G8.4	CALML3	NA	chr10:5566924-5568225	inner
CUST_43659_PI429285431	0.9021382	A	0.88797206	A	1.00986758671932	0	lncRNA	48415-1_{1..2442}	"gi|323276701|ref|NR_037851.1| Homo sapiens uncharacterized LOC100505918 (LOC100505918), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|323276701|ref|NR_037851.1| Homo sapiens uncharacterized LOC100505918 (LOC100505918), non-coding RNA"	Chr1	168369426	168371867	-	100505918	NR_037851.1	NA	NA	NA	NA	NA	inter
CUST_12389_PI429285431	0.87589556	A	0.87341225	A	1.001722781611	0	lncRNA	14002-1_{1..1006}	lnc-LRRTM4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRRTM4-3:1	chr2	 78517514	 78518519	-	lnc-LRRTM4-3	lnc-LRRTM4-3:1	XLOC_002174	linc-LRRTM4-3	NA	NA	NA	inter
CUST_36793_PI429285431	3.8441992	P	4.082755	P	0.847593365362184	0	lncRNA	37965-1_{1..325}	n345272|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_821|NULL|-1.3314300|-0.2497770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345272|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_821|NULL|-1.3314300|-0.2497770	chr14	 71165248	 71165572	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006575	1.760509	A	2.7322812	A	0.509879344545032	0	lncRNA	TCONS_00017488	NA	NA	NA	NA	XLOC_008116	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008116), lincRNA [TCONS_00017488]"	chrX:13437746-13433623	hs|Xp22.2	Agilent_HUMAN_G3V2	TCONS_00017488	TCONS_00017488	chrX	 13433623	 13437746	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8065_PI429285431	3.0410573	A	2.73498	A	1.23634150266656	0	lncRNA	9672-1_{1..490}	lnc-ACACA-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ACACA-1:2	chr17	 35293863	 35294352	-	lnc-ACACA-1	lnc-ACACA-1:2	ENSG00000255509	RP11-445F12.1	LHX1	NA	chr17:35294772-35301915	inter
LNCA_21_P0005296	0.87932444	A	0.8731864	A	1.00426362863155	0	lncRNA	ENST00000441150	NA	NA	NA	NA	XLOC_006408	NA	ENST00000441150	NA	NA	"BROAD Institute lincRNA (XLOC_006408), lincRNA [TCONS_00013156]"	chr7:35535693-35535634	hs|7p14.2	Agilent_HUMAN_G3V2	ENST00000441150	ENST00000441150	chr7	 35535634	 35535693	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35_PI429201921	0.90043986	A	0.8859341	A	1.01010534424402	0	lncRNA	36-1_{1..1164}	TC0Y000289.hg.1	TCONS_l2_00031011-XLOC_l2_015917 // Broad TUCP // linc-SRY-1 chrY:-:6110486-6111651 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:6110486-6111651	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031011-XLOC_l2_015917	linc-SRY-1	chrY	  6110486	  6111651	-	NA	NA	NA	NA	ANXA8L1	NA	chr10:47157989-47161848	Unknown
CUST_33631_PI429285431	4.6664915	P	4.9737587	P	0.808171174427866	0	lncRNA	35196-1_{1..260}	n340393|AF056436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2854|NULL|-1.1281800|-0.0481701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340393|AF056436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2854|NULL|-1.1281800|-0.0481701	chr5	 10675433	 10675692	-	NA	NA	NA	NA	DAP	NA	chr5:10679342-10685687	inter
LNCA_21_P0003882	14.649359	P	14.681847	P	0.977732693728331	0	lncRNA	TCONS_00009003	NA	NA	NA	NA	XLOC_003849	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003849), lincRNA [TCONS_00009003]"	chr4:1283011-1282952	hs|4p16.3	Agilent_HUMAN_G3V2	TCONS_00009003	TCONS_00009003	chr4	  1282952	  1283011	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8402_PI429285431	3.4264672	P	2.441827	A	1.9788197448114	0	lncRNA	9979-1_{1..429}	lnc-CCDC90B-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCDC90B-2:4	chr11	 82904509	 82904937	-	lnc-CCDC90B-2	lnc-CCDC90B-2:4	ENSG00000247137	RP11-727A23.5	ANKRD42	NA	chr11:82905291-82914662	inter
CUST_51889_PI429285431	2.8951483	A	1.7426116	A	2.22304430286367	0	lncRNA	55438-1_{1..594}	hg19_lincRNAsTranscripts_TCONS_l2_00012704 range=chr19:55183347-55184200 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012704 range=chr19:55183347-55184200 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 55183347	 55183940	+	NA	NA	NA	NA	LILRB4	NA	chr19:55174124-55179848	inter
CUST_23675_PI429285431	0.88093	A	1.1558834	A	0.826477013474936	0	lncRNA	25240-1_{1..411}	lnc-EFR3A-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EFR3A-3:1	chr8	131961755	131962165	+	lnc-EFR3A-3	lnc-EFR3A-3:1	ENSG00000253992.1	RP11-737F9.1	ADCY8	"hg19_refFlat_ADCY8:range=chr8:131792636-1320525795'pad=0,hg19_refFlat_ADCY8:range=chr8:131792636-1320525795'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30chr8:131951755-131971911"	NA	inner
CUST_7221_PI429285431	0.89454895	A	0.8874354	A	1.00494291321471	0	lncRNA	7715-1_{1..335}	"transcript_id ""ENST00000577579.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577579.1"" | genecode_v17"	chr5	138099909	138100243	+	ENSG00000265361.1	ENST00000577579.1	RN7SL867P	RN7SL867P-201	CTNNA1	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-20.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10chr5:138089909-138110243"	NA	inner
LNCA_21_P0004618	4.389849	P	4.84958	P	0.727121822678073	0	lncRNA	AK090788	NA	AK090788	NA	NA	XLOC_005915	NA	NA	THC2516532	NA	"BROAD Institute lincRNA (XLOC_005915), lincRNA [TCONS_00011240]"	chr6:165206923-165107292	hs|6q27	Agilent_HUMAN_G3V2	AK090788	AK090788	chr6	165107292	165206923	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32730_PI429285431	4.6573997	P	4.9596896	P	0.810964181329659	0	lncRNA	34370-1_{1..715}	n339358|AK130853|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1790|NULL|0.0607527|-0.2307026	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339358|AK130853|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1790|NULL|0.0607527|-0.2307026	chr3	 49941908	 49942622	+	NA	NA	NA	NA	MST1R	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30chr3:49931908-49941306"	NA	inter
CUST_45943_PI429285431	1.365167	A	1.619614	A	0.838308405413339	0	lncRNA	50244-2_{3001..3849}	"gi|410170633|ref|XR_110540.3| PREDICTED: Homo sapiens uncharacterized LOC100130507 (LOC100130507), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170633|ref|XR_110540.3| PREDICTED: Homo sapiens uncharacterized LOC100130507 (LOC100130507), misc_RNA"	NA	NA	NA	NA	NA	XR_110540.3	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006530	2.6998897	A	2.3446748	A	1.27917610974353	0	lncRNA	TCONS_00017301	NA	NA	NA	NA	XLOC_008128	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008128), lincRNA [TCONS_00017301]"	chrX:20967766-20967707	hs|Xp22.12	Agilent_HUMAN_G3V2	TCONS_00017301	TCONS_00017301	chrX	 20967707	 20967766	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42513_PI429285431	1.2914816	A	1.549743	A	0.83609489526444	0	lncRNA	45298-1_{1..133}	ENST00000517111 ncrna:snoRNA chromosome:GRCh37:1:152984958:152985090:-1 gene:ENSG00000252920 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517111 ncrna:snoRNA chromosome:GRCh37:1:152984958:152985090:-1 gene:ENSG00000252920 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	152984958	152985090	-	ENSG00000252920	ENST00000517111	NA	NA	SPRR3	NA	chr1:152974958-152976332	inter
CUST_19261_PI429285431	0.99754834	A	1.7687545	A	0.585927407283513	0	lncRNA	20929-2_{3001..5646}	lnc-C9orf4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-C9orf4-1:1	chr9	111895573	111898218	-	lnc-C9orf4-1	lnc-C9orf4-1:1	ENSG00000260230.1	RP11-526J3.3	C9orf4	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-27.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90chr9:111899581-111908218"	NA	inter
CUST_8566_PI429285431	1.7037492	A	1.759979	A	0.96177424603878	0	lncRNA	10124-1_{1..2618}	lnc-ATP6AP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ATP6AP2-3:1	chrX	 39936191	 39938808	+	lnc-ATP6AP2-3	lnc-ATP6AP2-3:1	ENSG00000247055	ENST00000501455	BCOR	"hg19_refFlat_BCOR:range=chrX:39911362-399371825'pad=0,hg19_refFlat_BCOR:range=chrX:39911362-399371825'pad=0 3'pad=0 strand=- repeatMasking=none,-99.20chrX:39926191-39947210"	NA	inner
CUST_32247_PI429285431	1.654153	A	2.1983223	A	0.685786162691989	0	lncRNA	33939-1_{1..2398}	n338822|AK025324|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1245|NULL|-0.1694460|-0.3097073	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338822|AK025324|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1245|NULL|-0.1694460|-0.3097073	chr13	 97842075	 97844472	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008294	2.569851	A	3.6729887	P	0.465502977226785	0	lncRNA	BX648502	NA	BX648502	NA	Hs.254789	XLOC_011047	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011047), lincRNA [TCONS_00022412]"	chr14:62027892-62027833	hs|14q23.1	Agilent_HUMAN_G3V2	BX648502	BX648502	chr14	 62027833	 62027892	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47145_PI429285431	11.574153	P	11.715656	P	0.906574193984338	0	lncRNA	51226-1_{1..795}	"gi|315623323|ref|NR_037675.1| Homo sapiens proline rich 24 (PRR24), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315623323|ref|NR_037675.1| Homo sapiens proline rich 24 (PRR24), transcript variant 2, non-coding RNA"	Chr19	 47777659	 47778453	+	255783	NR_037675.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003668	0.9042739	A	0.92087287	A	0.988560406229541	0	lncRNA	TCONS_00008303	NA	NA	NA	NA	XLOC_003752	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003752), lincRNA [TCONS_00008303]"	chr4:156894955-156895014	hs|4q32.1	Agilent_HUMAN_G3V2	TCONS_00008303	TCONS_00008303	chr4	156894955	156895014	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001014	1.3874191	A	0.9178762	A	1.38467068289972	0	lncRNA	ENST00000426504	NA	NA	NA	NA	XLOC_000387	NA	ENST00000426504	NA	NA	"BROAD Institute lincRNA (XLOC_000387), lincRNA [TCONS_00000297]"	chr1:147260953-147261012	hs|1q21.2	Agilent_HUMAN_G3V2	ENST00000426504	ENST00000426504	chr1	147260953	147261012	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17842_PI429285431	3.7626913	P	3.9036431	P	0.906920628367762	0	lncRNA	19577-1_{1..505}	lnc-JMJD1C-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JMJD1C-1:2	chr10	 64885185	 64885689	-	lnc-JMJD1C-1	lnc-JMJD1C-1:2	XLOC_008835	linc-EGR2	NRBF2	NA	chr10:64893007-64895297	inter
LNCA_21_P0009696	8.245363	P	8.263779	P	0.987316128553506	0	lncRNA	TCONS_00026959	NA	NA	NA	NA	XLOC_013015	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013015), lincRNA [TCONS_00026959]"	chr19:23003245-23003910	hs|19p12	Agilent_HUMAN_G3V2	TCONS_00026959	TCONS_00026959	chr19	 23003245	 23003910	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014665	5.2888465	P	5.902743	P	0.653429502776729	0	lncRNA	XR_110950	XR_110950	XR_110950	NA	Hs.559790	LOC100505874	uncharacterized LOC100505874	NA	THC2684091	NA	"PREDICTED: Homo sapiens hypothetical LOC100505874, transcript variant 3 (LOC100505874), miscRNA [XR_110950]"	chrUn_gl000224:106076-106135	NA	Agilent_HUMAN_G3V2	XR_110950	XR_110950	chrUn_gl000224	   106076	   106135	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013589	5.3597016	P	4.7547493	P	1.52092846576853	0	lncRNA	XR_108989	XR_108989	XR_108989	NA	NA	LOC100507540	uncharacterized LOC100507540	NA	THC2548824	NA	"PREDICTED: Homo sapiens hypothetical LOC100507540 (LOC100507540), miscRNA [XR_108989]"	chr9:74930069-74930128	hs|9q21.13	Agilent_HUMAN_G3V2	XR_108989	XR_108989	chr9	 74930069	 74930128	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49320_PI429285431	1.3586975	A	2.5645285	A	0.433519562076741	0	lncRNA	53136-1_{1..918}	hg19_lincRNAsTranscripts_TCONS_l2_00022884 range=chr5:44495203-44504508 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022884 range=chr5:44495203-44504508 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 44495203	 44496120	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001553	6.966842	P	6.883914	P	1.05916547402037	0	lncRNA	THC2716580	NA	NA	NA	NA	XLOC_000932	NA	NA	THC2716580	NA	"BROAD Institute lincRNA (XLOC_000932), lincRNA [TCONS_00001602]"	chr1:098389882-098389823	hs|1p21.3	Agilent_HUMAN_G3V2	THC2716580	THC2716580	chr1	 98389823	 98389882	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008490	2.2771187	A	2.3896077	A	0.92499085020028	0	lncRNA	TCONS_00022880	NA	NA	NA	NA	XLOC_011134	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011134), lincRNA [TCONS_00022880]"	chr14:101820284-101820225	hs|14q32.31	Agilent_HUMAN_G3V2	TCONS_00022880	TCONS_00022880	chr14	101820225	101820284	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008651	4.6950655	P	4.2058444	P	1.40368683135871	0	lncRNA	TCONS_00023452	NA	NA	NA	NA	XLOC_011298	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011298), lincRNA [TCONS_00023452]"	chr15:71385830-71385889	hs|15q23	Agilent_HUMAN_G3V2	TCONS_00023452	TCONS_00023452	chr15	 71385830	 71385889	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_24_P927614	0.8809455	A	0.8849463	A	0.997230698369799	0	lncRNA	XR_108485	XR_108485	XR_108485	   442092	Hs.626041	ARVP6125	uncharacterized LOC442092	NA	NP1460839	GO:0005576	"PREDICTED: Homo sapiens hypothetical LOC442092 (ARVP6125), miscRNA [XR_108485]"	chr3:129762501-129762560	hs|3q22.1	Agilent_HUMAN_G3V2	XR_108485	XR_108485	chr3	129762501	129762560	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3354_PI429285431	0.8937723	A	0.8984831	A	0.996740047483486	0	lncRNA	3329-1_{1..206}	"transcript_id ""ENST00000445631.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000445631.1"" | genecode_v17"	chr9	  2541097	  2541302	+	ENSG00000231052.1	ENST00000445631.1	RP11-91N2.3	RP11-91N2.3-001	NA	"hg19_refFlat_ERCC6L:range=chrX:71424864-714587615'pad=0,hg19_refFlat_ERCC6L:range=chrX:71424864-714587615'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20"	NA	inter
LNCA_21_P0006151	2.3407571	A	1.7811769	A	1.47384029214467	0	lncRNA	TCONS_00016009	NA	NA	NA	NA	XLOC_007401	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007401), lincRNA [TCONS_00016009]"	chr9:75979855-75979914	hs|9q21.13	Agilent_HUMAN_G3V2	TCONS_00016009	TCONS_00016009	chr9	 75979855	 75979914	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001650	0.90274274	A	0.87512493	A	1.01932761315242	0	lncRNA	TCONS_00001896	NA	NA	NA	NA	XLOC_001281	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001281), lincRNA [TCONS_00001896]"	chr1:242717097-242717038	hs|1q43	Agilent_HUMAN_G3V2	TCONS_00001896	TCONS_00001896	chr1	242717038	242717097	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13233_PI429285431	0.8848232	A	0.8789958	A	1.00404741462846	0	lncRNA	14861-1_{1..460}	lnc-HS3ST4-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HS3ST4-1:6	chr16	 26351912	 26352371	+	lnc-HS3ST4-1	lnc-HS3ST4-1:6	XLOC_011679	linc-C16orf82	NA	NA	NA	inter
CUST_7668_PI429285431	2.2499094	A	1.216542	A	2.0467961148575	0	lncRNA	9301-1_{1..2415}	lnc-EYS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EYS-1:1	chr6	 64421831	 64424245	-	lnc-EYS-1	lnc-EYS-1:1	ENSG00000247761	ENST00000499551	EYS	"hg19_refFlat_PHF3:range=chr6:64356457-644236045'pad=0,hg19_refFlat_PHF3:range=chr6:64356457-644236045'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80chr6:64429876-64433895"	NA	inner
CUST_51641_PI429285431	6.694084	P	6.938453	P	0.844184941520516	0	lncRNA	55211-1_{1..1798}	hg19_lincRNAsTranscripts_TCONS_l2_00010814 range=chr17:44335527-44338723 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010814 range=chr17:44335527-44338723 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 44335527	 44337324	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_DND1:range=chr5:140050878-1400531275'pad=0,hg19_refFlat_DND1:range=chr5:140050878-1400531275'pad=0 3'pad=0 strand=- repeatMasking=none,-107.90;hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0,hg19_refFlat_FOXM1:range=chr12:2967804-29836445'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70"	NA	inter
CUST_22287_PI429285431	0.90196216	A	1.387696	A	0.714133726831466	0	lncRNA	23887-1_{1..524}	lnc-CYB561-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYB561-3:1	chr17	 61491515	 61492038	-	lnc-CYB561-3	lnc-CYB561-3:1	ENSG00000226797.1	AC015923.1	TANC2	NA	chr17:61481515-61501673	inner
CUST_38081_PI429285431	7.3074822	P	7.8428802	P	0.689968307105122	0	lncRNA	39157-1_{1..2413}	n381069|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001azm.3||1.5119700|-0.1659543	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381069|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001azm.3||1.5119700|-0.1659543	chr1	 16973907	 16976319	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008522	2.8205645	A	2.1412895	A	1.60133483142177	0	lncRNA	TCONS_00023044	NA	NA	NA	NA	XLOC_010915	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010915), lincRNA [TCONS_00023044]"	chr14:95796298-95796357	hs|14q32.13	Agilent_HUMAN_G3V2	TCONS_00023044	TCONS_00023044	chr14	 95796298	 95796357	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38725_PI429285431	0.88481706	A	0.88006556	A	1.00329891832178	0	lncRNA	39720-1_{1..2429}	n384217|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bwe.1||-1.0281300|-0.2078556	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384217|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bwe.1||-1.0281300|-0.2078556	chr3	 11577722	 11580150	+	NA	NA	NA	NA	ATG7	"hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40chr3:11567722-11590151"	NA	inner
CUST_24394_PI429285431	1.7776141	A	0.9091515	A	1.82571629896282	0	lncRNA	25947-1_{1..539}	lnc-OR10AB1P-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR10AB1P-2:1	chr11	  7730948	  7731486	+	lnc-OR10AB1P-2	lnc-OR10AB1P-2:1	ENSG00000254707.1	RP11-35J10.4	OVCH2	NA	chr11:7720948-7727941	inter
LNCA_21_P0014836	0.8796569	A	0.9072134	A	0.981080552369093	0	lncRNA	XR_132695	XR_132695	XR_132695	NA	NA	LOC441035	uncharacterized LOC441035	NA	THC2608998	NA	"PREDICTED: Homo sapiens hypothetical LOC441035 (LOC441035), miscRNA [XR_132695]"	chr4:116102561-116102620	hs|4q26	Agilent_HUMAN_G3V2	XR_132695	XR_132695	chr4	116102561	116102620	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25279_PI429285431	3.0860977	A	2.5987487	A	1.40186653130764	0	lncRNA	26809-1_{1..527}	lnc-TMEM178-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM178-1:9	chr2	 39826506	 39827032	+	lnc-TMEM178-1	lnc-TMEM178-1:9	ENSG00000231312.2	AC007246.3	NA	NA	NA	inter
CUST_37888_PI429285431	0.8796534	A	0.87578076	A	1.00268791548187	0	lncRNA	38978-2_{3001..6000}	n346423|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1973|NULL|-1.3197400|-0.2951543	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346423|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1973|NULL|-1.3197400|-0.2951543	chr4	185261865	185264864	-	NA	NA	NA	NA	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.51;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90"	NA	inter
CUST_8965_PI429285431	0.9417818	A	1.0042815	A	0.957603479826599	0	lncRNA	10499-1_{1..3000}	lnc-SPAM1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPAM1-4:3	chr7	124782769	124785768	+	lnc-SPAM1-4	lnc-SPAM1-4:3	ENSG00000224897	RP11-3B12.1	NA	NA	NA	inter
CUST_31143_PI429285431	1.203443	A	1.7379913	A	0.690374795471379	0	lncRNA	32938-1_{1..315}	n337472|EF100440|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394855|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394855|-1.1002800|-0.2003942	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337472|EF100440|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394855|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394855|-1.1002800|-0.2003942	chr6	144263761	144264075	-	NA	NA	NA	NA	PLAGL1	NA	chr6:144261437-144385735	inner
CUST_41123_PI429285431	2.5084352	A	2.8882391	A	0.76854204851564	0	lncRNA	41895-1_{1..102}	ENST00000385016 ncrna:miRNA chromosome:GRCh37:14:101490114:101490215:1 gene:ENSG00000207749 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385016 ncrna:miRNA chromosome:GRCh37:14:101490114:101490215:1 gene:ENSG00000207749 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101490114	101490215	+	ENSG00000207749	ENST00000385016	NA	NA	NA	NA	NA	inter
CUST_49118_PI429285431	0.924499	A	1.0990312	A	0.88605477955608	0	lncRNA	52941-1_{1..307}	hg19_lincRNAsTranscripts_TCONS_l2_00021898 range=chr4:69049896-69051921 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021898 range=chr4:69049896-69051921 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	 69049896	 69050202	-	NA	NA	NA	NA	TMPRSS11BNL	NA	chr4:69054242-69061921	inter
CUST_38947_PI429285431	1.2566582	A	0.91614926	A	1.26620319410567	0	lncRNA	39933-1_{1..1569}	n385116|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tcq.1||-1.2633500|-0.4324614	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385116|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tcq.1||-1.2633500|-0.4324614	chr7	 31826530	 31828098	-	NA	NA	NA	NA	PDE1C	NA	chr7:31816530-31838099	inner
CUST_14705_PI429285431	5.619255	P	5.9367385	P	0.802468407062521	0	lncRNA	16369-1_{1..493}	lnc-C8orf22-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C8orf22-2:1	chr8	 50105666	 50106158	+	lnc-C8orf22-2	lnc-C8orf22-2:1	XLOC_006793	linc-SNTG1-2	NA	NA	NA	inter
CUST_224_PI429201921	0.9184369	A	0.9597024	A	0.971802130218	0	lncRNA	175-2_{3001..5834}	TC17002137.hg.1	 TCONS_l2_00010643-XLOC_l2_005719 // Broad TUCP // linc-NLK-2 chr17:+:26075314-26081142 // chr17 // 100 // 100 // 0 // --- // 0///TCONS_l2_00010642-XLOC_l2_005719 // Broad TUCP // linc-NLK-2 chr17:+:26075313-26081148 // chr17 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr17:+:26075313-26081148	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00010642-XLOC_l2_005719	linc-NLK-2	chr17	 26075313	 26081148	+	NA	NA	NA	NA	CNR2	NA	chr1:24223601-24239817	Unknown
CUST_36591_PI429285431	0.89778376	A	0.90880483	A	0.992389881111715	0	lncRNA	37785-1_{1..1152}	n345087|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_636|NULL|-1.2893900|-0.3112562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345087|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_636|NULL|-1.2893900|-0.3112562	chrX	 57190928	 57192079	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001832	7.1022024	P	6.8106575	P	1.22395023482593	0	lncRNA	ENST00000442387	NA	NA	NA	NA	XLOC_001365	NA	ENST00000442387	THC2666462	NA	"BROAD Institute lincRNA (XLOC_001365), lincRNA [TCONS_00002832]"	chr2:16214330-16214389	hs|2p24.3	Agilent_HUMAN_G3V2	ENST00000442387	ENST00000442387	chr2	 16214330	 16214389	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009462	4.4538393	P	4.5772715	P	0.918001107972815	0	lncRNA	TCONS_00026292	NA	NA	NA	NA	XLOC_012636	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012636), lincRNA [TCONS_00026292]"	chr18:14931790-14931849	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_00026292	TCONS_00026292	chr18	 14931790	 14931849	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35460_PI429285431	15.588514	P	15.523216	P	1.04630103917661	0	lncRNA	36864-1_{1..468}	n342538|AB076357|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5034|NULL|1.4814600|-0.0267726	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342538|AB076357|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5034|NULL|1.4814600|-0.0267726	chr21	 46047039	 46047506	+	NA	NA	NA	NA	TSPEAR	NA	chr21:46037039-46058218	inner
LNCA_21_P0004304	4.4313684	P	4.4618793	P	0.979073517965611	0	lncRNA	TCONS_00010104	NA	NA	NA	NA	XLOC_004573	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004573), lincRNA [TCONS_00010104]"	chr5:139125746-139125805	hs|5q31.2	Agilent_HUMAN_G3V2	TCONS_00010104	TCONS_00010104	chr5	139125746	139125805	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001465	6.1375923	P	6.767299	P	0.646307796382395	0	lncRNA	TCONS_00001386	NA	NA	NA	NA	XLOC_000698	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000698), lincRNA [TCONS_00001386]"	chr1:9509353-9509294	hs|1p36.22	Agilent_HUMAN_G3V2	TCONS_00001386	TCONS_00001386	chr1	  9509294	  9509353	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37527_PI429285431	0.9089648	A	1.4029447	A	0.710063571991915	0	lncRNA	38631-1_{1..629}	n346001|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1550|NULL|-1.2512200|-0.2672136	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346001|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1550|NULL|-1.2512200|-0.2672136	chr14	 89479728	 89480356	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006572	9.362552	P	8.898021	P	1.37986870443998	0	lncRNA	TCONS_00017462	NA	NA	NA	NA	XLOC_008061	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008061), lincRNA [TCONS_00017462]"	chrX:121593357-121593416	hs|Xq25	Agilent_HUMAN_G3V2	TCONS_00017462	TCONS_00017462	chrX	121593357	121593416	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27471_PI429285431	5.1921372	P	6.605709	P	0.375381173088728	0	lncRNA	29042-1_{1..372}	n324648|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317555|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317555|0.1465710|-0.2405903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324648|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000317555|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000317555|0.1465710|-0.2405903	chr22	 46819190	 46819561	-	NA	NA	NA	NA	CELSR1	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-96.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40chr22:46809190-46833030"	NA	inner
CUST_51703_PI429285431	0.88606626	A	0.8768888	A	1.00638160675853	0	lncRNA	55260-1_{1..2521}	hg19_lincRNAsTranscripts_TCONS_l2_00011910 range=chr18:46466-49388 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011910 range=chr18:46466-49388 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	    46466	    48986	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004983	3.1775815	P	1.536128	A	3.11979990123532	0	lncRNA	BC050075	NA	BC050075	NA	NA	LOC285768	uncharacterized LOC285768	NA	THC2616754	NA	"BROAD Institute lincRNA (XLOC_005571), lincRNA [TCONS_00012036]"	chr6:1068899-1068840	hs|6p25.3	Agilent_HUMAN_G3V2	BC050075	BC050075	chr6	  1068840	  1068899	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012782	2.1098409	A	1.3176382	A	1.73171642172144	0	lncRNA	ENST00000506972	NA	NA	NA	NA	XLOC_l2_011204	NA	ENST00000506972	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011204), lincRNA [TCONS_l2_00021935]"	chr4:103351615-103351556	hs|4q24	Agilent_HUMAN_G3V2	ENST00000506972	ENST00000506972	chr4	103351556	103351615	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006751	0.8784517	A	1.4927778	A	0.653234956101418	0	lncRNA	ENST00000419406	NA	NA	NA	NA	XLOC_008791	NA	ENST00000419406	THC2706221	NA	"BROAD Institute lincRNA (XLOC_008791), lincRNA [TCONS_00017960]"	chr10:44274176-44273261	hs|10q11.21	Agilent_HUMAN_G3V2	ENST00000419406	ENST00000419406	chr10	 44273261	 44274176	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005703	9.349845	P	9.720478	P	0.773443064757853	0	lncRNA	TCONS_00014724	NA	NA	NA	NA	XLOC_006814	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006814), lincRNA [TCONS_00014724]"	chr8:60987226-60987285	hs|8q12.1	Agilent_HUMAN_G3V2	TCONS_00014724	TCONS_00014724	chr8	 60987226	 60987285	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2261_PI429285431	0.9174306	A	0.91015106	A	1.00505854407643	0	lncRNA	2253-1_{1..952}	"transcript_id ""ENST00000512237.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512237.1"" | genecode_v17"	chr5	 91990555	 91991506	+	ENSG00000249169.1	ENST00000512237.1	CTC-529L17.1	CTC-529L17.1-002	NA	NA	NA	inter
LNCA_21_P0008741	2.335435	A	1.4274126	A	1.87647152780442	0	lncRNA	TCONS_00023680	NA	NA	NA	NA	XLOC_011481	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011481), lincRNA [TCONS_00023680]"	chr15:53092335-53092276	hs|15q21.3	Agilent_HUMAN_G3V2	TCONS_00023680	TCONS_00023680	chr15	 53092276	 53092335	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39180_PI429285431	6.482248	P	6.4563894	P	1.01808541129373	0	lncRNA	40155-1_{1..1101}	n385921|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vjd.2||6.3122500|-0.1227691	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385921|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009vjd.2||6.3122500|-0.1227691	chr1	    15795	    16895	-	NA	NA	NA	NA	LOC100652771	NA	chr1:12190-13639	inter
CUST_2057_PI429285431	0.9598838	A	0.88713557	A	1.05171822398539	0	lncRNA	2049-1_{1..643}	"transcript_id ""ENST00000514474.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000514474.1"" | genecode_v17"	chr5	  5057844	  5058486	+	ENSG00000215231.3	ENST00000514474.1	CTD-2247C11.3	CTD-2247C11.3-004	NA	NA	NA	inter
CUST_5267_PI429285431	7.3574657	P	7.3533635	P	1.00284747474081	0	lncRNA	5207-1_{1..564}	"transcript_id ""ENST00000559211.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000559211.1"" | genecode_v17"	chr15	 81719789	 81720352	+	ENSG00000259543.1	ENST00000559211.1	CTD-2034I4.1	CTD-2034I4.1-001	NA	NA	NA	inter
CUST_10396_PI429285431	1.8759967	A	1.1961434	A	1.60197685037528	0	lncRNA	11924-1_{1..628}	lnc-FMNL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FMNL2-1:1	chr2	153039319	153039946	+	lnc-FMNL2-1	lnc-FMNL2-1:1	XLOC_001710	linc-FMNL2-1	STAM2	NA	chr2:153029319-153032506	inter
CUST_9463_PI429285431	3.8799338	P	3.9578254	P	0.94744125596481	0	lncRNA	10969-1_{1..260}	lnc-STX18-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STX18-1:1	chr4	  4577761	  4578020	-	lnc-STX18-1	lnc-STX18-1:1	XLOC_003863	linc-STX18-1	NA	NA	NA	inter
CUST_43587_PI429285431	0.9009448	A	2.2002463	A	0.406322877189265	0	lncRNA	48352-8_{21001..23659}	"gi|387942412|ref|NR_049745.1| Homo sapiens HYDIN2, axonemal central pair apparatus protein (pseudogene) (HYDIN2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387942412|ref|NR_049745.1| Homo sapiens HYDIN2, axonemal central pair apparatus protein (pseudogene) (HYDIN2), non-coding RNA"	NA	NA	NA	NA	NA	NR_049745.1	NA	NA	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-59.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20"	NA	Unknown
CUST_9177_PI429285431	1.0777416	A	1.8237673	A	0.596243814653431	0	lncRNA	10693-2_{3001..3678}	lnc-TMEM132D-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TMEM132D-3:10	chr12	130648202	130648879	-	lnc-TMEM132D-3	lnc-TMEM132D-3:10	ENSG00000250208	XLOC_010263	FZD10	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.60chr12:130647004-130650285"	NA	inter
LNCA_21_P0008996	5.694684	P	5.5414877	P	1.11203045541582	0	lncRNA	THC2669746	NA	NA	NA	NA	XLOC_011827	NA	NA	THC2669746	NA	"BROAD Institute lincRNA (XLOC_011827), lincRNA [TCONS_00024511]"	chr16:088228392-088228451	hs|16q24.2	Agilent_HUMAN_G3V2	THC2669746	THC2669746	chr16	 88228392	 88228451	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11705_PI429285431	3.2888665	P	3.359469	P	0.952240239304636	0	lncRNA	13283-1_{1..2289}	lnc-RP11-408E5.4.1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-408E5.4.1-4:4	chr13	 19589222	 19591510	+	lnc-RP11-408E5.4.1-4	lnc-RP11-408E5.4.1-4:4	XLOC_010288	linc-MPHOSPH8-4	NA	NA	NA	inter
LNCA_21_P0014274	6.2587466	P	6.2131553	P	1.03210610949617	0	lncRNA	ENST00000525941	XR_109072	XR_109072	NA	NA	LOC100506518	NA	ENST00000525941	THC2540139	NA	"PREDICTED: Homo sapiens hypothetical LOC100506518 (LOC100506518), miscRNA [XR_109072]"	chr11:784095-784154	hs|11p15.5	Agilent_HUMAN_G3V2	ENST00000525941	ENST00000525941	chr11	   784095	   784154	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20099_PI429285431	1.0319833	A	1.1873281	A	0.897917747456871	0	lncRNA	21747-1_{1..644}	lnc-SLC35F5-9:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC35F5-9:2	chr2	115918681	115919324	-	lnc-SLC35F5-9	lnc-SLC35F5-9:2	ENSG00000235026.1	AC066593.1	DPP10	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr2:115908681-115928768"	NA	inner
LNCA_21_P0014087	0.91834426	A	0.94556844	A	0.981306567038221	0	lncRNA	ENST00000455754	XR_108394	XR_108394	NA	Hs.675421	LOC100506405	NA	ENST00000455754	THC2654098	NA	"PREDICTED: Homo sapiens hypothetical LOC100506405, transcript variant 2 (LOC100506405), miscRNA [XR_108394]"	chr2:11823387-11823446	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000455754	ENST00000455754	chr2	 11823387	 11823446	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41419_PI429285431	3.6118476	P	4.387156	P	0.584263714868097	0	lncRNA	42563-1_{1..100}	ENST00000582623 ncrna:miRNA chromosome:GRCh37:2:240007523:240007622:-1 gene:ENSG00000264810 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582623 ncrna:miRNA chromosome:GRCh37:2:240007523:240007622:-1 gene:ENSG00000264810 gene_biotype:miRNA transcript_biotype:miRNA	chr2	240007523	240007622	-	ENSG00000264810	ENST00000582623	NA	NA	HDAC4	NA	chr2:239997523-240017622	inner
LNCA_21_P0003023	0.91942245	A	0.95831776	A	0.973400006929905	0	lncRNA	TCONS_00006195	NA	NA	NA	NA	XLOC_002792	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002792), lincRNA [TCONS_00006195]"	chr3:125369271-125369330	hs|3q21.2	Agilent_HUMAN_G3V2	TCONS_00006195	TCONS_00006195	chr3	125369271	125369330	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011099	0.91960335	A	0.960338	A	0.972159777585554	0	lncRNA	TCONS_l2_00006295	NA	NA	NA	NA	XLOC_l2_003404	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003404), lincRNA [TCONS_l2_00006295]"	chr12:64078543-64078484	hs|12q14.2	Agilent_HUMAN_G3V2	TCONS_l2_00006295	TCONS_l2_00006295	chr12	 64078484	 64078543	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33620_PI429285431	9.079478	P	9.406572	P	0.79714053649121	0	lncRNA	35185-1_{1..903}	n340379|BC032907|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2840|NULL|-1.1779700|-0.2604420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340379|BC032907|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2840|NULL|-1.1779700|-0.2604420	chr5	 10352826	 10353728	-	NA	NA	NA	NA	6-Mar	NA	chr5:10353828-10363713	inter
CUST_52230_PI429285431	4.622711	P	4.4697413	P	1.11185580567646	0	lncRNA	55742-1_{1..2097}	hg19_lincRNAsTranscripts_TCONS_00030033 range=chr7_gl000195_random:43232-86697 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00030033 range=chr7_gl000195_random:43232-86697 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7_gl000195_random	    43232	    45328	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12495_PI429285431	7.0828905	P	7.143788	P	0.958667547088477	0	lncRNA	14107-1_{1..2413}	lnc-PREX1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PREX1-4:1	chr20	 47032980	 47035392	-	lnc-PREX1-4	lnc-PREX1-4:1	XLOC_013777	linc-SULF2-2	NA	NA	NA	inter
LNCA_21_P0010448	3.8000536	P	3.6807728	P	1.08619324776332	0	lncRNA	TCONS_00029721	NA	NA	NA	NA	XLOC_014397	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014397), lincRNA [TCONS_00029721]"	chr22:45894223-45894164	hs|22q13.31	Agilent_HUMAN_G3V2	TCONS_00029721	TCONS_00029721	chr22	 45894164	 45894223	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26132_PI429285431	5.9832344	P	6.120354	P	0.909332864615211	0	lncRNA	27643-1_{1..550}	lnc-NDE1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDE1-2:1	chr16	 15835613	 15836162	+	lnc-NDE1-2	lnc-NDE1-2:1	ENSG00000263065.1	AF001548.6	MYH11	"hg19_refFlat_MYH11:range=chr16:15802668-159321095'pad=0,hg19_refFlat_MYH11:range=chr16:15802668-159321095'pad=0 3'pad=0 strand=- repeatMasking=none,-99.90;hg19_refFlat_MYH11:range=chr16:15797848-159321095'pad=0,hg19_refFlat_MYH11:range=chr16:15797848-159321095'pad=0 3'pad=0 strand=- repeatMasking=none,-99.90chr16:15825613-15845648"	NA	inner
CUST_35265_PI429285431	4.277869	P	4.434991	P	0.89681231845788	0	lncRNA	36666-1_{1..2954}	n342274|BC039101|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4765|NULL|-0.2266350|-0.2228786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342274|BC039101|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4765|NULL|-0.2266350|-0.2228786	chr15	 76051841	 76054794	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007906	1.0776464	A	0.9229084	A	1.11321943414349	0	lncRNA	XR_132733	XR_132733	XR_132733	NA	Hs.549878	LOC100652856	uncharacterized LOC100652856	NA	THC2607547	NA	"PREDICTED: Homo sapiens hypothetical LOC100652856, transcript variant 2 (LOC100652856), miscRNA [XR_132733]"	chr13:19500548-19500607	hs|13q12.11	Agilent_HUMAN_G3V2	XR_132733	XR_132733	chr13	 19500548	 19500607	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1454_PI429285431	2.0211294	A	2.3639188	A	0.788515270588338	0	lncRNA	1443-1_{1..683}	"transcript_id ""ENST00000600280.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600280.1"" | genecode_v17"	chr3	125579658	125580340	-	ENSG00000241288.2	ENST00000600280.1	RP11-379B18.5	RP11-379B18.5-008	NA	NA	NA	inter
CUST_2230_PI429285431	3.5277624	P	3.6548223	P	0.915695666387867	0	lncRNA	2222-1_{1..452}	"transcript_id ""ENST00000503843.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503843.1"" | genecode_v17"	chr5	 86042748	 86043199	+	ENSG00000250544.1	ENST00000503843.1	CTC-493L21.1	CTC-493L21.1-002	NA	NA	NA	inter
CUST_27059_PI429285431	10.733489	P	10.28779	P	1.36197384644756	0	lncRNA	28593-1_{1..575}	n324170|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051454|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051454|-1.1600400|-0.4358705	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324170|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051454|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051454|-1.1600400|-0.4358705	chr9	    62715	    63289	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26522_PI429285431	4.3908157	P	4.594555	P	0.868297117727461	0	lncRNA	28029-1_{1..474}	lnc-DLX2-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DLX2-4:4	chr2	173420817	173421290	-	lnc-DLX2-4	lnc-DLX2-4:4	ENSG00000225205.1	AC093818.1	PDK1	"hg19_refFlat_PDK3:range=chrX:24483573-245572815'pad=0,hg19_refFlat_PDK3:range=chrX:24483573-245572815'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_PDK1:range=chr2:173420879-1734606975'pad=0,hg19_refFlat_PDK1:range=chr2:173420879-1734606975'pad=0 3'pad=0 strand=+ repeatMasking=none,-111.50;hg19_refFlat_PDK3:range=chrX:24483573-245521895'pad=0,hg19_refFlat_PDK3:range=chrX:24483573-245521895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10chr2:173420779-173431135"	NA	inner
CUST_22356_PI429285431	7.0639625	P	6.8359814	P	1.17119483790175	0	lncRNA	23950-1_{1..754}	lnc-FITM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FITM2-1:1	chr20	 42983659	 42984412	-	lnc-FITM2-1	lnc-FITM2-1:1	ENSG00000226812.1	RP5-881L22.5	HNF4A	"hg19_refFlat_R3HDML:range=chr20:42965798-429794325'pad=0,hg19_refFlat_R3HDML:range=chr20:42965798-429794325'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70chr20:42984441-42993825"	NA	inter
CUST_48115_PI429285431	2.86523	A	2.9984913	A	0.911768011726762	0	lncRNA	51987-1_{1..692}	"gi|341914839|ref|XR_133532.1| PREDICTED: Homo sapiens chromosome 9 open reading frame 147 (C9orf147), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341914839|ref|XR_133532.1| PREDICTED: Homo sapiens chromosome 9 open reading frame 147 (C9orf147), misc_RNA"	NA	NA	NA	NA	NA	XR_133532.1	NA	NA	NA	NA	NA	Unknown
CUST_13850_PI429285431	2.9841027	A	3.09151	P	0.928254751499638	0	lncRNA	15493-1_{1..452}	lnc-RP11-327F22.5.1-7:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-327F22.5.1-7:8	chr16	 51806290	 51806741	+	lnc-RP11-327F22.5.1-7	lnc-RP11-327F22.5.1-7:8	XLOC_011722	linc-CHD9-6	NA	NA	NA	inter
CUST_25815_PI429285431	1.272348	A	1.1130928	A	1.11671048072525	0	lncRNA	27336-1_{1..561}	lnc-SAP30-5:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:10	chr4	174462626	174463186	+	lnc-SAP30-5	lnc-SAP30-5:10	ENSG00000237125.3	RP11-471J12.1	NA	NA	NA	inter
LNCA_21_P0012189	0.8858166	A	0.8943972	A	0.994070033373306	0	lncRNA	THC2677337	NA	NA	NA	NA	XLOC_l2_009159	NA	NA	THC2677337	NA	"BROAD Institute lincRNA (XLOC_l2_009159), lincRNA [TCONS_l2_00017170]"	chr21:023434420-023434361	hs|21q21.1	Agilent_HUMAN_G3V2	THC2677337	THC2677337	chr21	 23434361	 23434420	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1323_PI429285431	1.0474969	A	1.5521262	A	0.704841463079258	0	lncRNA	1312-1_{1..582}	"transcript_id ""ENST00000446601.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446601.1"" | genecode_v17"	chr3	 26753798	 26754379	+	ENSG00000234165.1	ENST00000446601.1	AC114877.3	AC114877.3-001	LRRC3B	NA	chr3:26743798-26752267	inter
LNCA_21_P0002607	0.8813994	A	0.88568765	A	0.997032024775718	0	lncRNA	TCONS_00004877	NA	NA	NA	NA	XLOC_001637	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001637), lincRNA [TCONS_00004877]"	chr2:118812339-118815239	hs|2q14.2	Agilent_HUMAN_G3V2	TCONS_00004877	TCONS_00004877	chr2	118812339	118815239	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10888_PI429285431	0.91630757	A	0.9017283	A	1.01015681370465	0	lncRNA	12429-1_{1..534}	lnc-ZNF727-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF727-3:1	chr7	 63487065	 63487598	+	lnc-ZNF727-3	lnc-ZNF727-3:1	XLOC_006121	linc-ZNF727-2	NA	NA	NA	inter
CUST_8479_PI429285431	2.426123	A	2.1037357	A	1.25039793423863	0	lncRNA	10043-1_{1..536}	lnc-XRN2-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-XRN2-2:11	chr20	 21224883	 21225418	+	lnc-XRN2-2	lnc-XRN2-2:11	ENSG00000088970	PLK1S1	PLK1S1	NA	chr20:21214883-21227260	inner
CUST_49598_PI429285431	4.481781	P	4.408156	P	1.05235757964729	0	lncRNA	53388-1_{1..2855}	hg19_lincRNAsTranscripts_TCONS_l2_00025009 range=chr6:160131791-160134936 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025009 range=chr6:160131791-160134936 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	160131791	160134645	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19809_PI429285431	1.0768044	A	1.4306988	A	0.782469053513098	0	lncRNA	21466-1_{1..396}	lnc-CCDC38-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC38-1:2	chr12	 96252532	 96252927	-	lnc-CCDC38-1	lnc-CCDC38-1:2	ENSG00000258343.1	RP11-536G4.2	SNRPF	NA	chr12:96252709-96260238	inter
CUST_36251_PI429285431	4.062253	P	3.2315419	P	1.77856179402176	0	lncRNA	37493-2_{3001..6000}	n344786|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_335|NULL|-1.3275900|-0.1961214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344786|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_335|NULL|-1.3275900|-0.1961214	NA	     3000	     5999	NA	NA	NA	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-59.80"	NA	Unknown
CUST_42078_PI429285431	0.8890402	A	2.4682922	A	0.334655353854455	0	lncRNA	44001-1_{1..95}	ENST00000385229 ncrna:miRNA chromosome:GRCh37:15:55665138:55665232:-1 gene:ENSG00000207964 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385229 ncrna:miRNA chromosome:GRCh37:15:55665138:55665232:-1 gene:ENSG00000207964 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 55665138	 55665232	-	ENSG00000207964	ENST00000385229	NA	NA	CCPG1	NA	chr15:55655138-55675232	inter
CUST_44542_PI429285431	7.684604	P	6.3448157	P	2.53114174282689	0	lncRNA	49131-3_{6001..7870}	"gi|402478650|ref|NR_073106.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402478650|ref|NR_073106.1| Homo sapiens integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) (ITGA2), transcript variant 5, non-coding RNA"	Chr5	 52291156	 52293025	+	3673	NR_073106.1	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.21;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80"	NA	inter
LNCA_21_P0005938	2.11172	A	2.2812474	A	0.88913389715456	0	lncRNA	TCONS_00015286	NA	NA	NA	NA	XLOC_006821	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006821), lincRNA [TCONS_00015286]"	chr8:64649782-64654714	hs|8q12.3	Agilent_HUMAN_G3V2	TCONS_00015286	TCONS_00015286	chr8	 64649782	 64654714	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003472	4.4687347	P	4.6085157	P	0.90765692648497	0	lncRNA	ENST00000504537	NA	NA	NA	NA	XLOC_003964	NA	ENST00000504537	NA	NA	"BROAD Institute lincRNA (XLOC_003964), lincRNA [TCONS_00007771]"	chr4:60460151-60440031	hs|4q13.1	Agilent_HUMAN_G3V2	ENST00000504537	ENST00000504537	chr4	 60440031	 60460151	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005634	0.8790493	A	0.8723131	A	1.00468009563492	0	lncRNA	ENST00000500180	NA	BC038572	NA	Hs.552133	XLOC_006920	NA	ENST00000500180	THC2501645	NA	"BROAD Institute lincRNA (XLOC_006920), lincRNA [TCONS_00014545]"	chr8:127341352-127341411	hs|8q24.21	Agilent_HUMAN_G3V2	ENST00000500180	ENST00000500180	chr8	127341352	127341411	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30537_PI429285431	10.099682	P	10.276033	P	0.884938437590026	0	lncRNA	32317-1_{1..404}	n335707|CR622645|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000301840|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000301840|-0.9856630|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335707|CR622645|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000301840|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000301840|-0.9856630|-1.0000000	chr16	 29910438	 29910841	-	NA	NA	NA	NA	SEZ6L2	NA	chr16:29900438-29910580	inner
CUST_32227_PI429285431	0.8835904	A	0.90858275	A	0.982825810039919	0	lncRNA	33919-1_{1..1475}	n338800|CR597957|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1223|NULL|-1.2705300|-0.4421731	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338800|CR597957|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1223|NULL|-1.2705300|-0.4421731	chr2	 42815139	 42816613	+	NA	NA	NA	NA	MTA3	NA	chr2:42805139-42826614	inner
CUST_44501_PI429285431	0.9068583	A	1.9627144	A	0.481011702912941	0	lncRNA	49101-1_{1..1953}	"gi|341915281|ref|XR_132508.1| PREDICTED: Homo sapiens PP12100 (LOC100128508), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915281|ref|XR_132508.1| PREDICTED: Homo sapiens PP12100 (LOC100128508), misc_RNA"	NA	NA	NA	NA	NA	XR_132508.1	NA	NA	NA	NA	NA	Unknown
CUST_26083_PI429285431	5.7821236	P	6.002359	P	0.858425358451497	0	lncRNA	27596-1_{1..845}	lnc-MTX1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MTX1-1:6	chr1	155174826	155175670	+	lnc-MTX1-1	lnc-MTX1-1:6	ENSG00000231064.1	RP11-263K19.4	THBS3	"hg19_refFlat_THBS3:range=chr1:155165632-1551776675'pad=0,hg19_refFlat_THBS3:range=chr1:155165632-1551776675'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90chr1:155165379-155177690"	NA	inner
CUST_20826_PI429285431	1.9716667	A	2.6897333	A	0.607911577555531	0	lncRNA	22457-1_{1..421}	lnc-FAM103A1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM103A1-2:2	chr15	 83730239	 83730659	+	lnc-FAM103A1-2	lnc-FAM103A1-2:2	ENSG00000260608.1	RP11-382A20.7	BTBD1	NA	chr15:83720239-83736106	inner
LNCA_21_P0001089	3.0130267	P	1.8265041	A	2.27603477435145	0	lncRNA	ENST00000457440	NA	NA	NA	NA	XLOC_000680	NA	ENST00000457440	THC2762269	NA	"BROAD Institute lincRNA (XLOC_000680), lincRNA [TCONS_00000457]"	chr1:2728474-2728415	hs|1p36.32	Agilent_HUMAN_G3V2	ENST00000457440	ENST00000457440	chr1	  2728415	  2728474	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37688_PI429285431	3.0994358	A	3.247611	A	0.902391134982748	0	lncRNA	38780-1_{1..1207}	n346176|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1726|NULL|-1.2963100|-0.2905215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346176|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1726|NULL|-1.2963100|-0.2905215	chr5	 78839219	 78840425	-	NA	NA	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20"	NA	inter
CUST_37454_PI429285431	7.397284	P	7.850216	P	0.730556622523237	0	lncRNA	38553-1_{1..1207}	n345904|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1453|NULL|-1.3629000|-0.3266630	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345904|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1453|NULL|-1.3629000|-0.3266630	chr21	 17763955	 17765161	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48809_PI429285431	2.6785574	A	3.6764657	P	0.500725453753431	0	lncRNA	52647-1_{1..1797}	hg19_lincRNAsTranscripts_TCONS_l2_00014330 range=chr2:242626503-242633574 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014330 range=chr2:242626503-242633574 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	242626503	242628299	+	NA	NA	NA	NA	ING5	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-58.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60chr2:242641456-242643574"	NA	inter
CUST_51714_PI429285431	0.9129778	A	0.9116926	A	1.00089122966581	0	lncRNA	55271-1_{1..535}	hg19_lincRNAsTranscripts_TCONS_l2_00011969 range=chr18:11619760-11622360 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011969 range=chr18:11619760-11622360 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 11619760	 11620294	-	NA	NA	NA	NA	AMAC1L1	NA	chr18:11609760-11610611	inter
LNCA_21_P0001270	2.5394504	A	2.9386258	A	0.758291575497862	0	lncRNA	TCONS_00000863	NA	NA	NA	NA	XLOC_000090	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000090), lincRNA [TCONS_00000863]"	chr1:22584445-22584504	hs|1p36.12	Agilent_HUMAN_G3V2	TCONS_00000863	TCONS_00000863	chr1	 22584445	 22584504	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013521	0.9196845	A	0.96575236	A	0.968572629435679	0	lncRNA	TCONS_l2_00028289	NA	NA	NA	NA	XLOC_l2_014579	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014579), lincRNA [TCONS_l2_00028289]"	chr8:90597985-90597926	hs|8q21.3	Agilent_HUMAN_G3V2	TCONS_l2_00028289	TCONS_l2_00028289	chr8	 90597926	 90597985	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004299	1.9265764	A	0.96574277	A	1.94643427472117	0	lncRNA	TCONS_00010096	NA	NA	NA	NA	XLOC_004556	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004556), lincRNA [TCONS_00010096]"	chr5:133305945-133306004	hs|5q31.1	Agilent_HUMAN_G3V2	TCONS_00010096	TCONS_00010096	chr5	133305945	133306004	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15141_PI429285431	0.9235595	A	1.8796332	A	0.515457826588936	0	lncRNA	16803-1_{1..1666}	lnc-STK39-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STK39-3:3	chr2	169285454	169287119	-	lnc-STK39-3	lnc-STK39-3:3	XLOC_002384	linc-STK39-3	NA	NA	NA	inter
CUST_34524_PI429285431	11.814364	P	11.787563	P	1.01875066423872	0	lncRNA	35988-1_{1..1374}	n341403|CR590086|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3873|NULL|-0.4710620|-0.1898034	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341403|CR590086|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3873|NULL|-0.4710620|-0.1898034	chr8	  9412656	  9414029	-	NA	NA	NA	NA	TNKS	"hg19_refFlat_TNKS:range=chr8:9413450-96342465'pad=0,hg19_refFlat_TNKS:range=chr8:9413450-96342465'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.40chr8:9413445-9424030"	NA	inner
CUST_26101_PI429285431	0.9242928	A	0.91919047	A	1.00354292703505	0	lncRNA	27613-1_{1..247}	lnc-C1orf53-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf53-1:1	chr1	197730932	197731178	+	lnc-C1orf53-1	lnc-C1orf53-1:1	ENSG00000224901.1	RP11-448G4.4	DENND1B	NA	chr1:197720932-197741095	inner
LNCA_21_P0001150	1.8882306	A	1.3021427	A	1.50117055750318	0	lncRNA	ENST00000435832	NA	NA	NA	NA	XLOC_000914	NA	ENST00000435832	NA	NA	"BROAD Institute lincRNA (XLOC_000914), lincRNA [TCONS_00000562]"	chr1:90976526-90976467	hs|1p22.2	Agilent_HUMAN_G3V2	ENST00000435832	ENST00000435832	chr1	 90976467	 90976526	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36743_PI429285431	1.100921	A	1.0483959	A	1.03707849943911	0	lncRNA	37916-1_{1..1214}	n345223|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_772|NULL|-1.3189600|-0.3403341	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345223|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_772|NULL|-1.3189600|-0.3403341	chr13	 44649456	 44650669	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45332_PI429285431	10.039405	P	10.697063	P	0.633906514762806	0	lncRNA	49771-2_{3001..4997}	"gi|392306973|ref|NR_052015.1| Homo sapiens RUN and SH3 domain containing 2 (RUSC2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392306973|ref|NR_052015.1| Homo sapiens RUN and SH3 domain containing 2 (RUSC2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_052015.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014127	0.899686	A	0.91466177	A	0.989673277794967	0	lncRNA	XR_108512	XR_108512	XR_108512	NA	NA	LOC100505508	uncharacterized LOC100505508	NA	THC2605844	NA	"PREDICTED: Homo sapiens hypothetical LOC100505508 (LOC100505508), miscRNA [XR_108512]"	chr3:170713397-170713456	hs|3q26.2	Agilent_HUMAN_G3V2	XR_108512	XR_108512	chr3	170713397	170713456	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34144_PI429285431	2.426165	A	1.4618427	A	1.95114676316404	0	lncRNA	35663-1_{1..3000}	n340984|AK125480|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3450|NULL|2.7592800|-0.1077770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340984|AK125480|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3450|NULL|2.7592800|-0.1077770	chr11	 17795942	 17798941	+	NA	NA	NA	NA	KCNC1	NA	chr11:17785942-17804602	inner
CUST_41664_PI429285431	8.620891	P	8.103972	P	1.4308961802137	0	lncRNA	43089-1_{1..66}	ENST00000585312 ncrna:miRNA chromosome:GRCh37:7:63361446:63361511:1 gene:ENSG00000263891 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585312 ncrna:miRNA chromosome:GRCh37:7:63361446:63361511:1 gene:ENSG00000263891 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 63361446	 63361511	+	ENSG00000263891	ENST00000585312	NA	NA	NA	NA	NA	inter
LNCA_21_P0002825	6.2326984	P	6.2687044	P	0.975351405146748	0	lncRNA	TCONS_00005695	NA	NA	NA	NA	XLOC_002973	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002973), lincRNA [TCONS_00005695]"	chr3:193560684-193560743	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00005695	TCONS_00005695	chr3	193560684	193560743	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7350_PI429285431	10.522753	P	10.147477	P	1.29708767497197	0	lncRNA	8996-2_{3001..3522}	lnc-HES5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,UCSC,"	>lnc-HES5-1:2	chr1	  2491416	  2491937	-	lnc-HES5-1	lnc-HES5-1:2	ENSG00000238164	RP3-395M20.8	TNFRSF14	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20chr1:2487805-2495268"	NA	inner
CUST_20720_PI429285431	5.902487	P	5.8097224	P	1.0664117635909	0	lncRNA	22355-1_{1..611}	lnc-MED6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MED6-1:2	chr14	 71107725	 71108335	-	lnc-MED6-1	lnc-MED6-1:2	ENSG00000259115.1	CTD-2540L5.5	TTC9	NA	chr14:71108504-71117921	inter
LNCA_21_P0012347	3.0784268	P	0.9003371	A	4.52553921940455	0	lncRNA	ENST00000420583	NA	NA	NA	NA	XLOC_l2_009477	NA	ENST00000420583	THC2695503	NA	"BROAD Institute lincRNA (XLOC_l2_009477), lincRNA [TCONS_l2_00018344]"	chr22:21524889-21524948	hs|22q11.21	Agilent_HUMAN_G3V2	ENST00000420583	ENST00000420583	chr22	 21524889	 21524948	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_750_PI429285431	4.6149144	P	4.5099845	P	1.07544213386605	0	lncRNA	741-1_{1..577}	"transcript_id ""ENST00000590373.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590373.1"" | genecode_v17"	chr2	 11264884	 11265460	-	ENSG00000145063.10	ENST00000590373.1	AC062028.1	AC062028.1-005	C2orf50	NA	chr2:11254884-11282947	inter
CUST_25129_PI429285431	0.9084725	A	0.8996637	A	1.00612447324576	0	lncRNA	26667-1_{1..416}	lnc-KAT7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KAT7-1:1	chr17	 47913716	 47914131	+	lnc-KAT7-1	lnc-KAT7-1:1	ENSG00000262837.1	RP11-304F15.7	TAC4	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70chr17:47915671-47923816"	NA	inter
CUST_20284_PI429285431	0.91224194	A	0.92358375	A	0.992169277490066	0	lncRNA	21927-1_{1..346}	lnc-OR52B4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR52B4-1:1	chr11	  4159316	  4159661	-	lnc-OR52B4-1	lnc-OR52B4-1:1	ENSG00000255276.1	RRM1-AS1	RRM1	"hg19_refFlat_RRM1:range=chr11:4116243-41596135'pad=0,hg19_refFlat_RRM1:range=chr11:4116243-41596135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80chr11:4149316-4160106"	NA	inner
CUST_713_PI429285431	1.1000588	A	1.0352559	A	1.04594203415266	0	lncRNA	706-1_{1..789}	"transcript_id ""ENST00000588051.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588051.1"" | genecode_v17"	chr2	  6778431	  6779219	-	ENSG00000236172.2	ENST00000588051.1	AC097517.2	AC097517.2-011	NA	NA	NA	inter
CUST_26478_PI429285431	1.0856205	A	1.2543252	A	0.88964107229769	0	lncRNA	27986-1_{1..829}	lnc-FAM171B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM171B-1:2	chr2	188419003	188419831	+	lnc-FAM171B-1	lnc-FAM171B-1:2	ENSG00000224063.1	AC007319.1	TFPI	"hg19_refFlat_IMPDH1:range=chr7:128033061-1280459185'pad=0,hg19_refFlat_IMPDH1:range=chr7:128033061-1280459185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_IMPDH1:range=chr7:128033061-1280499555'pad=0,hg19_refFlat_IMPDH1:range=chr7:128033061-1280499555'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80chr2:188409003-188419219"	NA	inner
CUST_7739_PI429285431	0.89190054	A	0.8932949	A	0.999033970204819	0	lncRNA	9368-1_{1..3000}	lnc-LSM11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LSM11-1:1	chr5	157275967	157278966	+	lnc-LSM11-1	lnc-LSM11-1:1	ENSG00000245834	ENST00000500739	CLINT1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CLINT1:range=chr5:157214654-1572859785'pad=0,hg19_refFlat_CLINT1:range=chr5:157214654-1572859785'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CLINT1:range=chr5:157214654-1572445425'pad=0,hg19_refFlat_CLINT1:range=chr5:157214654-1572445425'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60chr5:157265967-157286183"	NA	inner
CUST_16696_PI429285431	1.3010435	A	1.3533481	A	0.964394547929305	0	lncRNA	18401-1_{1..276}	lnc-INSIG2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INSIG2-1:2	chr2	118810669	118810944	+	lnc-INSIG2-1	lnc-INSIG2-1:2	XLOC_001637	linc-INSIG2-1	NA	NA	NA	inter
CUST_24066_PI429285431	4.86483	P	4.8517632	P	1.00909835626886	0	lncRNA	25616-1_{1..418}	lnc-CDYL2-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDYL2-6:4	chr16	 80574502	 80574919	-	lnc-CDYL2-6	lnc-CDYL2-6:4	ENSG00000259867.1	RP11-525K10.3	DYNLRB2	NA	chr16:80574854-80584541	inter
LNCA_21_P0009853	4.903573	P	5.3597016	P	0.728939709754137	0	lncRNA	TCONS_00027949	NA	NA	NA	NA	XLOC_013560	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013560), lincRNA [TCONS_00027949]"	chr20:48928229-48928386	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00027949	TCONS_00027949	chr20	 48928229	 48928386	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21068_PI429285431	3.4591115	P	3.048503	A	1.32924634548024	0	lncRNA	22695-1_{1..833}	lnc-HYI-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HYI-2:5	chr1	 44170024	 44170856	-	lnc-HYI-2	lnc-HYI-2:5	ENSG00000236200.1	RP11-184I16.2	ST3GAL3	NA	chr1:44173218-44180140	inter
LNCA_19_P00320567	6.825302	P	7.0106854	P	0.879415337927507	0	lncRNA	TCONS_00012649	NA	NA	NA	NA	XLOC_005595	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005595), lincRNA [TCONS_00012649]"	chr6:6711176-6711117	hs|6p25.1	Agilent_HUMAN_G3V2	TCONS_00012649	TCONS_00012649	chr6	  6711117	  6711176	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32232_PI429285431	3.1398282	A	3.4568212	P	0.802741283631507	0	lncRNA	33924-1_{1..2008}	n338805|AF339831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1228|NULL|-1.1888300|-0.3621428	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338805|AF339831|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1228|NULL|-1.1888300|-0.3621428	chr13	 95000747	 95002754	-	NA	NA	NA	NA	GPC6	NA	chr13:94990747-95012750	inner
CUST_38817_PI429285431	6.3277225	P	7.011618	P	0.622482204859704	0	lncRNA	39810-1_{1..1402}	n384587|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jcw.2||0.1636730|-0.2992475	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384587|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jcw.2||0.1636730|-0.2992475	chr5	  1628869	  1630270	-	NA	NA	NA	NA	NA	"hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-54.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-55.50;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-62.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30"	NA	inter
CUST_14647_PI429285431	1.6080936	A	2.075213	A	0.723407569964349	0	lncRNA	16317-1_{1..267}	lnc-LY86-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LY86-1:1	chr6	  6681366	  6681632	+	lnc-LY86-1	lnc-LY86-1:1	XLOC_005148	linc-RREB1-7	NA	NA	NA	inter
LNCA_21_P0004769	0.8802029	A	0.87427413	A	1.00411796582562	0	lncRNA	ENST00000449180	NA	NA	NA	NA	XLOC_005797	NA	ENST00000449180	NA	NA	"BROAD Institute lincRNA (XLOC_005797), lincRNA [TCONS_00011531]"	chr6:106807545-106807486	hs|6q21	Agilent_HUMAN_G3V2	ENST00000449180	ENST00000449180	chr6	106807486	106807545	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48619_PI429285431	0.8916458	A	0.8841414	A	1.00521520578998	0	lncRNA	52466-1_{1..779}	hg19_lincRNAsTranscripts_TCONS_l2_00014655 range=chr2:74977311-75005821 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014655 range=chr2:74977311-75005821 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 74977311	 74978089	-	NA	NA	NA	NA	HK2	NA	chr2:74981797-75015821	inter
LNCA_21_P0004707	0.8802229	A	0.8745657	A	1.00392897047683	0	lncRNA	ENST00000439207	NA	NA	NA	NA	XLOC_005540	NA	ENST00000439207	NA	NA	"BROAD Institute lincRNA (XLOC_005540), lincRNA [TCONS_00011415]"	chr6:167659345-167659404	hs|6q27	Agilent_HUMAN_G3V2	ENST00000439207	ENST00000439207	chr6	167659345	167659404	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36916_PI429285431	2.660397	A	3.0810678	P	0.747077180206275	0	lncRNA	38074-1_{1..851}	n345388|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_937|NULL|-1.7019300|-0.3934853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345388|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_937|NULL|-1.7019300|-0.3934853	chr20	 39611376	 39612226	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25420_PI429285431	1.5952692	A	2.5596726	A	0.512490298639611	0	lncRNA	26950-1_{1..504}	lnc-FNBP1L-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FNBP1L-1:3	chr1	 94070963	 94071466	+	lnc-FNBP1L-1	lnc-FNBP1L-1:3	ENSG00000224093.1	RP5-1033H22.2	BCAR3	"hg19_refFlat_BCAR3:range=chr1:94027798-941404865'pad=0,hg19_refFlat_BCAR3:range=chr1:94027798-941404865'pad=0 3'pad=0 strand=- repeatMasking=none,-98.20;hg19_refFlat_BCAR3:range=chr1:94027798-940794875'pad=0,hg19_refFlat_BCAR3:range=chr1:94027798-940794875'pad=0 3'pad=0 strand=- repeatMasking=none,-98.20chr1:94060963-94081130"	NA	inner
LNCA_21_P0004835	1.4758027	A	0.89743537	A	1.49315851359592	0	lncRNA	TCONS_00011689	NA	NA	NA	NA	XLOC_005165	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005165), lincRNA [TCONS_00011689]"	chr6:8992482-9046666	hs|6p24.3	Agilent_HUMAN_G3V2	TCONS_00011689	TCONS_00011689	chr6	  8992482	  9046666	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39047_PI429285431	0.88829416	A	0.9079735	A	0.986451933448707	0	lncRNA	40025-2_{3001..3685}	n385478|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zlh.1||-1.2635000|-0.4541020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385478|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zlh.1||-1.2635000|-0.4541020	chr9	 14614069	 14614753	-	NA	NA	NA	NA	ZDHHC21	NA	chr9:14601069-14624754	inner
CUST_17049_PI429285431	0.8772559	A	0.8756789	A	1.00109369074775	0	lncRNA	18759-1_{1..324}	lnc-GPR26-4:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR26-4:10	chr10	125270501	125270824	+	lnc-GPR26-4	lnc-GPR26-4:10	XLOC_008652	linc-GPR26-3	NA	NA	NA	inter
CUST_47398_PI429285431	6.272978	P	6.3727374	P	0.933188607555084	0	lncRNA	51443-1_{1..2060}	"gi|386781250|ref|NR_048535.1| Homo sapiens WD repeat domain 4 (WDR4), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386781250|ref|NR_048535.1| Homo sapiens WD repeat domain 4 (WDR4), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NR_048535.1	NA	NA	NA	NA	NA	Unknown
CUST_22648_PI429285431	0.9272494	A	1.3519001	A	0.745019090999808	0	lncRNA	24233-1_{1..1836}	lnc-ASH1L-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASH1L-1:3	chr1	155290926	155292761	-	lnc-ASH1L-1	lnc-ASH1L-1:3	ENSG00000225855.2	RUSC1-AS1	FDPS	"hg19_refFlat_FDPS:range=chr1:155279581-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155279581-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_FDPS:range=chr1:155287765-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155287765-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_FDPS:range=chr1:155279856-1552904005'pad=0,hg19_refFlat_FDPS:range=chr1:155279856-1552904005'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00chr1:155280926-155290457"	NA	inner
CUST_24765_PI429285431	1.1716896	A	1.9391972	A	0.587431445079848	0	lncRNA	26309-1_{1..296}	lnc-PURG-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PURG-1:2	chr8	 31034208	 31034503	-	lnc-PURG-1	lnc-PURG-1:2	ENSG00000253961.1	RP11-363L24.3	WRN	"hg19_refFlat_WRN:range=chr8:30915964-310306185'pad=0,hg19_refFlat_WRN:range=chr8:30915964-310306185'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90chr8:31024208-31031277"	NA	inter
LNCA_21_P0007615	1.9477317	A	2.009792	A	0.957895180456658	0	lncRNA	TCONS_00020542	NA	NA	NA	NA	XLOC_009857	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009857), lincRNA [TCONS_00020542]"	chr12:103347664-103347723	hs|12q23.2	Agilent_HUMAN_G3V2	TCONS_00020542	TCONS_00020542	chr12	103347664	103347723	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005816	9.7931185	P	10.060666	P	0.830730541119196	0	lncRNA	TCONS_00014969	NA	NA	NA	NA	XLOC_007051	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007051), lincRNA [TCONS_00014969]"	chr8:36823997-36823938	hs|8p11.23	Agilent_HUMAN_G3V2	TCONS_00014969	TCONS_00014969	chr8	 36823938	 36823997	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009681	0.9155658	A	0.947741	A	0.977944705231337	0	lncRNA	THC2670000	NA	NA	NA	NA	XLOC_012949	NA	NA	THC2670000	NA	"BROAD Institute lincRNA (XLOC_012949), lincRNA [TCONS_00026885]"	chr19:008745140-008745199	hs|19p13.2	Agilent_HUMAN_G3V2	THC2670000	THC2670000	chr19	  8745140	  8745199	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009958	0.9143916	A	0.9403168	A	0.98219051797688	0	lncRNA	TCONS_00028173	NA	NA	NA	NA	XLOC_013531	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013531), lincRNA [TCONS_00028173]"	chr20:43813806-43816907	hs|20q13.12	Agilent_HUMAN_G3V2	TCONS_00028173	TCONS_00028173	chr20	 43813806	 43816907	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010112	3.5853739	P	3.7733245	P	0.877851856033518	0	lncRNA	TCONS_00028635	NA	NA	NA	NA	XLOC_013683	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013683), lincRNA [TCONS_00028635]"	chr20:22504597-22504201	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028635	TCONS_00028635	chr20	 22504201	 22504597	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8706_PI429285431	2.6121616	A	1.350824	A	2.39717893247382	0	lncRNA	10251-2_{3001..6000}	lnc-TOP3A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TOP3A-1:1	chr17	 18263512	 18266511	-	lnc-TOP3A-1	lnc-TOP3A-1:1	ENSG00000249596	ENST00000503497	SHMT1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MYO15A:range=chr17:18022115-180821845'pad=0,hg19_refFlat_MYO15A:range=chr17:18022115-180821845'pad=0 3'pad=0 strand=+ repeatMasking=none,-112.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60chr17:18250512-18266856"	NA	inner
CUST_34100_PI429285431	4.9275484	P	5.2688513	P	0.789328146478769	0	lncRNA	35624-1_{1..2002}	n340921|AK026523|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3386|NULL|0.1241540|-0.1422709	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340921|AK026523|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3386|NULL|0.1241540|-0.1422709	chr17	 79668353	 79670354	-	NA	NA	NA	NA	HGS	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_HGS:range=chr17:79651097-796686485'pad=0,hg19_refFlat_HGS:range=chr17:79651097-796686485'pad=0 3'pad=0 strand=+ repeatMasking=none,-107.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00chr17:79658353-79669151"	NA	inner
CUST_31414_PI429285431	5.4919915	P	3.6402419	P	3.60937639748128	0	lncRNA	33186-1_{1..1235}	n337879|BC047114|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|262|NULL|-0.8524180|-0.4397534	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337879|BC047114|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|262|NULL|-0.8524180|-0.4397534	chr15	 66183108	 66184342	+	NA	NA	NA	NA	MEGF11	NA	chr15:66187634-66194329	inner
CUST_26999_PI429285431	0.91844434	A	0.9143423	A	1.00284736352147	0	lncRNA	28528-1_{1..382}	n324102|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000037045|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000037045|-1.0520700|-0.6050226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324102|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000037045|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000037045|-1.0520700|-0.6050226	chr9	 43130532	 43130913	-	NA	NA	NA	NA	ANKRD20A3	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80chr9:43120532-43133544"	NA	inner
CUST_51638_PI429285431	2.8589032	A	2.8776116	A	0.987116043314175	0	lncRNA	55208-1_{1..588}	hg19_lincRNAsTranscripts_TCONS_l2_00011287 range=chr17:43654822-43664634 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011287 range=chr17:43654822-43664634 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 43654822	 43655409	-	NA	NA	NA	NA	NA	"hg19_refFlat_DND1:range=chr5:140050878-1400531275'pad=0,hg19_refFlat_DND1:range=chr5:140050878-1400531275'pad=0 3'pad=0 strand=- repeatMasking=none,-97.90"	NA	inter
LNCA_21_P0011004	7.5901604	P	7.446061	P	1.10504061818255	0	lncRNA	ENST00000538304	XR_132886	XR_132886	NA	Hs.696467	XLOC_l2_002560	NA	ENST00000538304	THC2535315	NA	"PREDICTED: Homo sapiens hypothetical LOC729732 (LOC729732), miscRNA [XR_132886]"	chr12:8543550-8543101	hs|12p13.31	Agilent_HUMAN_G3V2	ENST00000538304	ENST00000538304	chr12	  8543101	  8543550	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014464	0.8864567	A	0.89529526	A	0.993892305319563	0	lncRNA	XR_109949	XR_109949	XR_109949	NA	NA	LOC100507201	uncharacterized LOC100507201	NA	THC2774395	NA	"PREDICTED: Homo sapiens hypothetical LOC100507201 (LOC100507201), miscRNA [XR_109949]"	chr2:81689640-81689581	hs|2p12	Agilent_HUMAN_G3V2	XR_109949	XR_109949	chr2	 81689581	 81689640	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42495_PI429285431	6.624735	P	6.9181137	P	0.815988825182296	0	lncRNA	45264-1_{1..66}	ENST00000391313 ncrna:snoRNA chromosome:GRCh37:14:45557446:45557511:1 gene:ENSG00000212615 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391313 ncrna:snoRNA chromosome:GRCh37:14:45557446:45557511:1 gene:ENSG00000212615 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 45557446	 45557511	+	ENSG00000212615	ENST00000391313	NA	NA	PRPF39	NA	chr14:45553302-45567511	inner
LNCA_21_P0001474	2.4149148	A	2.182099	A	1.1751262814078	0	lncRNA	TCONS_00001412	NA	NA	NA	NA	XLOC_000730	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000730), lincRNA [TCONS_00001412]"	chr1:20724277-20724218	hs|1p36.12	Agilent_HUMAN_G3V2	TCONS_00001412	TCONS_00001412	chr1	 20724218	 20724277	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30463_PI429285431	6.2395267	P	5.4592586	P	1.71745000169474	0	lncRNA	32243-1_{1..901}	n335607|CR597693|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000276888|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000276888|4.5877700|-0.1601391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335607|CR597693|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000276888|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000276888|4.5877700|-0.1601391	chr6	 43491635	 43492535	-	NA	NA	NA	NA	XPO5	NA	chr6:43490068-43506664	inner
CUST_21124_PI429285431	3.6637464	P	3.5447204	P	1.08600142787546	0	lncRNA	22750-1_{1..550}	lnc-FSIP1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FSIP1-5:2	chr15	 39713110	 39713659	-	lnc-FSIP1-5	lnc-FSIP1-5:2	ENSG00000259345.1	RP11-624L4.1	NA	NA	NA	inter
LNCA_21_P0013753	12.437867	P	12.084083	P	1.27790802075775	0	lncRNA	TCONS_l2_00030147	NA	NA	NA	NA	XLOC_l2_015451	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015451), lincRNA [TCONS_l2_00030147]"	chrX:12844957-12845016	hs|Xp22.2	Agilent_HUMAN_G3V2	TCONS_l2_00030147	TCONS_l2_00030147	chrX	 12844957	 12845016	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8417_PI429285431	0.9116322	A	0.89770234	A	1.00970220736459	0	lncRNA	9991-1_{1..3000}	lnc-GLT1D1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GLT1D1-1:1	chr12	129597610	129600609	+	lnc-GLT1D1-1	lnc-GLT1D1-1:1	ENSG00000249196	ENST00000512133	TMEM132D	NA	chr12:129587610-129607839	inner
CUST_20127_PI429285431	2.5012116	A	1.7410266	A	1.6937077987257	0	lncRNA	21774-2_{3001..3473}	lnc-MRPL3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-MRPL3-1:1	chr3	131176970	131177442	-	lnc-MRPL3-1	lnc-MRPL3-1:1	ENSG00000261167.1	RP11-517B11.7	MRPL3	NA	chr3:131181045-131187442	inter
CUST_11739_PI429285431	2.4159567	A	1.4598455	A	1.9400733518294	0	lncRNA	13319-1_{1..789}	lnc-SYNPO2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SYNPO2-1:1	chr4	119805327	119806115	+	lnc-SYNPO2-1	lnc-SYNPO2-1:1	XLOC_003666	linc-SYNPO2-1	SYNPO2	NA	chr4:119809996-119815840	inter
LNCA_21_P0012943	8.780738	P	8.852093	P	0.951743686730719	0	lncRNA	TCONS_l2_00023408	NA	NA	NA	NA	XLOC_l2_011620	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011620), lincRNA [TCONS_l2_00023408]"	chr5:69771532-69773203	hs|5q13.2	Agilent_HUMAN_G3V2	TCONS_l2_00023408	TCONS_l2_00023408	chr5	 69771532	 69773203	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15982_PI429285431	4.3194227	P	4.5741043	P	0.838172097214481	0	lncRNA	17681-1_{1..2794}	lnc-CDYL2-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-CDYL2-4:5	chr16	 80871829	 80874622	-	lnc-CDYL2-4	lnc-CDYL2-4:5	XLOC_012021	linc-CDYL2	NA	NA	NA	inter
CUST_34988_PI429285431	0.89625806	A	0.9094944	A	0.990867227679202	0	lncRNA	36403-1_{1..3000}	n341915|BC034605|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4396|NULL|-1.0831300|-0.2466054	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341915|BC034605|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4396|NULL|-1.0831300|-0.2466054	chr12	 50305735	 50308734	+	NA	NA	NA	NA	FAIM2	NA	chr12:50295735-50297760	inter
LNCA_21_P0005317	1.4516375	A	2.1933522	A	0.598028149686616	0	lncRNA	ENST00000456952	NA	NA	NA	NA	XLOC_006521	NA	ENST00000456952	NA	NA	"BROAD Institute lincRNA (XLOC_006521), lincRNA [TCONS_00013205]"	chr7:91010152-91010093	hs|7q21.13	Agilent_HUMAN_G3V2	ENST00000456952	ENST00000456952	chr7	 91010093	 91010152	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011770	11.197248	P	11.468637	P	0.828521476597806	0	lncRNA	BC041478	NA	BC041478	NA	Hs.633102	XLOC_l2_006718	NA	NA	THC2496644	NA	"BROAD Institute lincRNA (XLOC_l2_006718), lincRNA [TCONS_l2_00013323]"	chr19:37754265-37754324	hs|19q13.12	Agilent_HUMAN_G3V2	BC041478	BC041478	chr19	 37754265	 37754324	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007706	6.094446	P	6.4045086	P	0.806606758978013	0	lncRNA	TCONS_00020777	NA	NA	NA	NA	XLOC_010065	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010065), lincRNA [TCONS_00020777]"	chr12:49195078-49195019	hs|12q13.12	Agilent_HUMAN_G3V2	TCONS_00020777	TCONS_00020777	chr12	 49195019	 49195078	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39072_PI429285431	1.7130225	A	2.9839609	A	0.414390145441298	0	lncRNA	40047-1_{1..1240}	n385555|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aej.2||1.4312400|-0.3092768	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385555|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aej.2||1.4312400|-0.3092768	chr9	 66688087	 66689326	-	NA	NA	NA	NA	LOC100132004	NA	chr9:66678087-66709951	inter
LNCA_21_P0014124	5.895703	P	6.100492	P	0.867665577481905	0	lncRNA	XR_108504	XR_108504	XR_108504	NA	NA	LOC100507461	uncharacterized LOC100507461	ENST00000490465	THC2691522	NA	"PREDICTED: Homo sapiens hypothetical LOC100507461 (LOC100507461), miscRNA [XR_108504]"	chr3:147805753-147805812	hs|3q24	Agilent_HUMAN_G3V2	XR_108504	XR_108504	chr3	147805753	147805812	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3996_PI429285431	1.750099	A	2.3372555	A	0.665653594241306	0	lncRNA	3956-1_{1..503}	"transcript_id ""ENST00000565199.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565199.1"" | genecode_v17"	chr11	 68380367	 68380869	-	ENSG00000260808.1	ENST00000565199.1	CTD-2007L18.5	CTD-2007L18.5-001	PPP6R3	"hg19_refFlat_PPP6R3:range=chr11:68305133-683805855'pad=0,hg19_refFlat_PPP6R3:range=chr11:68305133-683805855'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60chr11:68370367-68382802"	NA	inner
CUST_5573_PI429285431	0.8930219	A	0.8989674	A	0.995887373544488	0	lncRNA	5502-1_{1..565}	"transcript_id ""ENST00000567862.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567862.1"" | genecode_v17"	chr16	 60520723	 60521287	-	ENSG00000261310.1	ENST00000567862.1	RP11-354I13.1	RP11-354I13.1-001	NA	NA	NA	inter
LNCA_21_P0011704	4.315878	P	3.6829119	P	1.55074997322465	0	lncRNA	TCONS_l2_00012645	NA	NA	NA	NA	XLOC_l2_006794	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006794), lincRNA [TCONS_l2_00012645]"	chr19:52105911-52105970	hs|19q13.41	Agilent_HUMAN_G3V2	TCONS_l2_00012645	TCONS_l2_00012645	chr19	 52105911	 52105970	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010534	0.8711098	A	0.87033904	A	1.0005343928579	0	lncRNA	ENST00000439318	NA	NA	NA	NA	XLOC_l2_000279	NA	ENST00000439318	THC2676688	NA	"BROAD Institute lincRNA (XLOC_l2_000279), lincRNA [TCONS_l2_00000359]"	chr7:76548395-76548453	hs|7q11.23	Agilent_HUMAN_G3V2	ENST00000439318	ENST00000439318	chr7	 76548395	 76548453	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50541_PI429285431	3.9587865	P	4.5189347	P	0.678232489111504	0	lncRNA	54233-2_{3001..3414}	hg19_lincRNAsTranscripts_TCONS_l2_00030633 range=chrX:152661098-152666834 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030633 range=chrX:152661098-152666834 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	152664098	152664511	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44778_PI429285431	4.8032374	P	5.914312	P	0.462949072113167	0	lncRNA	49317-1_{1..2821}	"gi|397139145|ref|XR_158795.1| PREDICTED: Homo sapiens uncharacterized LOC100996552 (LOC100996552), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|397139145|ref|XR_158795.1| PREDICTED: Homo sapiens uncharacterized LOC100996552 (LOC100996552), misc_RNA"	NA	NA	NA	NA	NA	XR_158795.1	NA	NA	NA	NA	NA	Unknown
CUST_3945_PI429285431	1.0510042	A	1.6505392	A	0.659966637225942	0	lncRNA	3915-1_{1..345}	"transcript_id ""ENST00000528000.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000528000.1"" | genecode_v17"	chr11	 55451617	 55451961	-	ENSG00000254804.1	ENST00000528000.1	RP11-674C21.9	RP11-674C21.9-001	NA	NA	NA	inter
CUST_4709_PI429285431	1.0265028	A	0.92055875	A	1.07619838729551	0	lncRNA	4656-1_{1..381}	"transcript_id ""ENST00000549951.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549951.1"" | genecode_v17"	chr14	 19529958	 19530338	+	ENSG00000258265.1	ENST00000549951.1	CTD-2311B13.2	CTD-2311B13.2-001	POTEG	NA	chr14:19519958-19540898	inter
CUST_39089_PI429285431	5.9702234	P	4.8274093	P	2.20811314723167	0	lncRNA	40065-1_{1..1370}	n385638|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004axb.2||-1.2153900|-0.4730729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385638|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004axb.2||-1.2153900|-0.4730729	chr9	 99957619	 99958988	-	NA	NA	NA	NA	ZNF322B	NA	chr9:99960585-99961793	inter
CUST_15124_PI429285431	1.4437791	A	0.9075642	A	1.45016282917313	0	lncRNA	16784-1_{1..380}	lnc-CA8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CA8-1:1	chr8	 61245498	 61245877	-	lnc-CA8-1	lnc-CA8-1:1	XLOC_007092	linc-CA8-1	NA	NA	NA	inter
CUST_42312_PI429285431	5.60328	P	6.246035	P	0.640488689897567	0	lncRNA	44939-1_{1..131}	ENST00000515924 ncrna:snoRNA chromosome:GRCh37:9:19063654:19063784:-1 gene:ENSG00000251733 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515924 ncrna:snoRNA chromosome:GRCh37:9:19063654:19063784:-1 gene:ENSG00000251733 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	 19063654	 19063784	-	ENSG00000251733	ENST00000515924	NA	NA	HAUS6	NA	chr9:19053654-19073784	inner
LNCA_21_P0012201	1.012655	A	2.3805034	A	0.387468678980313	0	lncRNA	TCONS_l2_00017202	NA	NA	NA	NA	XLOC_l2_009198	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009198), lincRNA [TCONS_l2_00017202]"	chr21:34484044-34483985	hs|21q22.11	Agilent_HUMAN_G3V2	TCONS_l2_00017202	TCONS_l2_00017202	chr21	 34483985	 34484044	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008326	0.9142017	A	0.93890774	A	0.983020876061115	0	lncRNA	ENST00000555636	NA	NA	NA	NA	XLOC_010809	NA	ENST00000555636	NA	NA	"BROAD Institute lincRNA (XLOC_010809), lincRNA [TCONS_00022480]"	chr14:38767753-38767809	hs|14q21.1	Agilent_HUMAN_G3V2	ENST00000555636	ENST00000555636	chr14	 38767753	 38767809	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003246	1.2125006	A	0.92979944	A	1.21647035274001	0	lncRNA	THC2644471	NA	NA	NA	NA	XLOC_002743	NA	NA	THC2644471	NA	"BROAD Institute lincRNA (XLOC_002743), lincRNA [TCONS_00006138]"	chr3:102868766-102868825	hs|3q13.11	Agilent_HUMAN_G3V2	THC2644471	THC2644471	chr3	102868766	102868825	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003478	3.1748629	P	3.7859309	P	0.654711851620678	0	lncRNA	ENST00000505930	NA	NA	NA	NA	XLOC_003986	NA	ENST00000505930	NA	NA	"BROAD Institute lincRNA (XLOC_003986), lincRNA [TCONS_00007781]"	chr4:76194395-76194336	hs|4q13.3	Agilent_HUMAN_G3V2	ENST00000505930	ENST00000505930	chr4	 76194336	 76194395	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37116_PI429285431	1.7071512	A	1.1287153	A	1.49322948376603	0	lncRNA	38240-2_{3001..3730}	n345558|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1107|NULL|-1.3099300|-0.4299298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345558|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1107|NULL|-1.3099300|-0.4299298	chr2	186301823	186302552	+	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-95.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10"	NA	inter
LNCA_21_P0012658	5.6253266	P	5.068093	P	1.47144498173462	0	lncRNA	TCONS_l2_00021062	NA	NA	NA	NA	XLOC_l2_011048	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011048), lincRNA [TCONS_l2_00021062]"	chr4:9630424-9630365	hs|4p16.1	Agilent_HUMAN_G3V2	TCONS_l2_00021062	TCONS_l2_00021062	chr4	  9630365	  9630424	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51499_PI429285431	6.602231	P	6.7032647	P	0.932364707019341	0	lncRNA	55075-1_{1..365}	hg19_lincRNAsTranscripts_TCONS_l2_00009838 range=chr16:74876359-74877177 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009838 range=chr16:74876359-74877177 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	 74876359	 74876723	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37062_PI429285431	2.7832172	A	3.0870545	P	0.810094826962361	0	lncRNA	38194-1_{1..2178}	n345511|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1060|NULL|-1.2936900|-0.2688865	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345511|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1060|NULL|-1.2936900|-0.2688865	chr2	 10702417	 10704594	+	NA	NA	NA	NA	NOL10	NA	chr2:10710894-10719759	inter
CUST_19635_PI429285431	1.6750935	A	2.6555483	A	0.506819943098415	0	lncRNA	21291-1_{1..558}	lnc-CTU2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTU2-4:1	chr16	 88808321	 88808878	+	lnc-CTU2-4	lnc-CTU2-4:1	ENSG00000260617.1	RP5-1142A6.7	FAM38A	"hg19_refFlat_PIEZO1:range=chr16:88782013-888513725'pad=0,hg19_refFlat_PIEZO1:range=chr16:88782013-888513725'pad=0 3'pad=0 strand=- repeatMasking=none,-95.20chr16:88798321-88818775"	NA	inner
CUST_45042_PI429285431	3.9454992	P	2.5100374	A	2.70468728538038	0	lncRNA	49538-2_{3001..5928}	"gi|240255595|ref|NR_027830.1| Homo sapiens B-cell receptor-associated protein 29 (BCAP29), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|240255595|ref|NR_027830.1| Homo sapiens B-cell receptor-associated protein 29 (BCAP29), transcript variant 3, non-coding RNA"	Chr7	107223422	107226349	+	55973	NR_027830.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0005872	0.8805974	A	0.8832748	A	0.998145888730671	0	lncRNA	TCONS_00015093	NA	NA	NA	NA	XLOC_007155	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007155), lincRNA [TCONS_00015093]"	chr8:93471965-93471906	hs|8q22.1	Agilent_HUMAN_G3V2	TCONS_00015093	TCONS_00015093	chr8	 93471906	 93471965	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9311_PI429285431	3.645073	P	3.3917015	P	1.19198947732802	0	lncRNA	10817-1_{1..393}	lnc-FAM105B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM105B-3:2	chr5	 14976670	 14977062	+	lnc-FAM105B-3	lnc-FAM105B-3:2	XLOC_004300	linc-FBXL7-1	NA	NA	NA	inter
CUST_47709_PI429285431	2.9685943	A	1.2183526	A	3.36414922208333	0	lncRNA	51673-1_{1..3000}	"gi|385137093|ref|NR_047630.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 60, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137093|ref|NR_047630.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 60, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047630.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0006351	6.911268	P	7.278349	P	0.7753496731783	0	lncRNA	TCONS_00016583	NA	NA	NA	NA	XLOC_007374	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007374), lincRNA [TCONS_00016583]"	chr9:67269265-67269324	hs|9q13	Agilent_HUMAN_G3V2	TCONS_00016583	TCONS_00016583	chr9	 67269265	 67269324	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7704_PI429285431	1.0691426	A	2.8736615	A	0.286276489744795	0	lncRNA	9337-1_{1..431}	lnc-ZBED5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZBED5-1:1	chr11	 10920679	 10921109	-	lnc-ZBED5-1	lnc-ZBED5-1:1	ENSG00000250041	CTD-2003C8.2	NA	NA	NA	inter
CUST_31681_PI429285431	5.3162603	P	5.208871	P	1.07727703177717	0	lncRNA	33428-1_{1..2862}	n338206|AK023343|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|598|NULL|-1.0596900|-0.2428418	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338206|AK023343|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|598|NULL|-1.0596900|-0.2428418	chr14	 21510240	 21513101	-	NA	NA	NA	NA	RNASE7	"hg19_refFlat_RNASE7:range=chr14:21511152-215116225'pad=0,hg19_refFlat_RNASE7:range=chr14:21511152-215116225'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40chr14:21510385-21512392"	NA	inner
CUST_19932_PI429285431	2.133215	A	2.2339325	A	0.932569078713974	0	lncRNA	21587-1_{1..2403}	lnc-KIAA1467-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1467-2:1	chr12	 13192384	 13194786	+	lnc-KIAA1467-2	lnc-KIAA1467-2:1	ENSG00000255621.1	RP11-377D9.3	KIAA1467	NA	chr12:13182384-13203613	inter
LNCA_21_P0000928	6.5282063	P	6.72849	P	0.87037938996699	0	lncRNA	AK021767	NA	AK021767	NA	NA	LOC115110	uncharacterized LOC115110	NA	THC2496994	NA	"BROAD Institute lincRNA (XLOC_000678), lincRNA [TCONS_00000075]"	chr1:2482059-2481702	hs|1p36.32	Agilent_HUMAN_G3V2	AK021767	AK021767	chr1	  2481702	  2482059	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19257_PI429285431	3.0601301	A	3.324046	A	0.832824317858064	0	lncRNA	20926-1_{1..431}	lnc-BOD1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BOD1-4:3	chr5	173513401	173513831	-	lnc-BOD1-4	lnc-BOD1-4:3	ENSG00000253447.1	RP11-619L12.4	HMP19	NA	chr5:173503401-173523478	inner
CUST_21277_PI429285431	5.727736	P	6.277766	P	0.683005925520581	0	lncRNA	22902-1_{1..1129}	lnc-EVX1-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EVX1-7:3	chr7	 27210927	 27212055	+	lnc-EVX1-7	lnc-EVX1-7:3	ENSG00000253187.2	HOXA-AS4	HOXA10	NA	chr7:27210210-27219880	inner
CUST_24132_PI429285431	6.987552	P	7.8669286	P	0.543602275386484	0	lncRNA	25684-1_{1..670}	lnc-CERK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CERK-1:1	chr22	 47157791	 47158460	-	lnc-CERK-1	lnc-CERK-1:1	ENSG00000260708.1	CTA-29F11.1	TBC1D22A	NA	chr22:47158518-47168460	inter
LNCA_21_P0012518	3.3419616	P	3.145663	P	1.14575501465025	0	lncRNA	ENST00000476815	NA	NA	NA	NA	XLOC_l2_010014	NA	ENST00000476815	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010014), lincRNA [TCONS_l2_00019999]"	chr3:181689487-181689658	hs|3q26.33	Agilent_HUMAN_G3V2	ENST00000476815	ENST00000476815	chr3	181689487	181689658	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7554_PI429285431	1.9088788	A	2.596849	A	0.620726567225762	0	lncRNA	9190-1_{1..1615}	lnc-LIPG-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LIPG-3:1	chr18	 47376007	 47377621	+	lnc-LIPG-3	lnc-LIPG-3:1	ENSG00000248524	ENST00000508397	MYO5B	NA	chr18:47366007-47387429	inner
CUST_8283_PI429285431	2.1122584	A	2.8139482	A	0.614851621279203	0	lncRNA	9867-1_{1..1907}	lnc-IKBIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IKBIP-1:1	chr12	 98998364	 99000270	-	lnc-IKBIP-1	lnc-IKBIP-1:1	ENSG00000246732	ENST00000499136	SLC25A3	"hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0,hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60chr12:98988364-98995778"	NA	inter
CUST_32063_PI429285431	1.3125113	A	0.91884875	A	1.31372430778836	0	lncRNA	33775-1_{1..3000}	n338625|BX647623|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1035|NULL|-0.7912280|-0.1858913	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338625|BX647623|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1035|NULL|-0.7912280|-0.1858913	chr2	  1828183	  1831182	+	NA	NA	NA	NA	MYT1L	NA	chr2:1818183-1842439	inner
CUST_7335_PI429285431	7.002	P	7.9883285	P	0.504760702281409	0	lncRNA	8819-1_{1..320}	"transcript_id ""ENST00000410528.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410528.1"" | genecode_v17"	chr20	 34231065	 34231384	+	ENSG00000222460.1	ENST00000410528.1	RN7SKP271	RN7SKP271-201	CPNE1	NA	chr20:34221065-34241384	inner
CUST_45437_PI429285431	7.365659	P	7.7048388	P	0.790490593311281	0	lncRNA	49854-2_{3001..3842}	"gi|291045127|ref|NR_033374.1| Homo sapiens uncharacterized LOC100289019 (LOC100289019), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|291045127|ref|NR_033374.1| Homo sapiens uncharacterized LOC100289019 (LOC100289019), non-coding RNA"	Chr9	130876450	130877291	-	100289019	NR_033374.1	NA	NA	NA	"hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-22.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-36.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70"	NA	inter
CUST_45111_PI429285431	4.4895363	P	5.3060865	P	0.567798050193823	0	lncRNA	49592-1_{1..2098}	"gi|394025762|ref|NR_073001.1| Homo sapiens ARP3 actin-related protein 3 homolog B (yeast) (ACTR3B), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|394025762|ref|NR_073001.1| Homo sapiens ARP3 actin-related protein 3 homolog B (yeast) (ACTR3B), transcript variant 4, non-coding RNA"	Chr7	152456834	152458931	+	57180	NR_073001.1	NA	NA	NA	NA	NA	inter
CUST_16612_PI429285431	6.5734205	P	6.571765	P	1.00114816379337	0	lncRNA	18312-1_{1..206}	lnc-FBXW11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBXW11-1:1	chr5	171222884	171223089	-	lnc-FBXW11-1	lnc-FBXW11-1:1	XLOC_005082	linc-KCNMB1-4	C5orf50	NA	chr5:171212884-171232948	inter
CUST_7277_PI429285431	2.791105	A	3.4012902	P	0.655112599164789	0	lncRNA	8135-1_{1..249}	"transcript_id ""ENST00000516483.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516483.1"" | genecode_v17"	chr10	 87409769	 87410017	-	ENSG00000252292.1	ENST00000516483.1	RN7SKP238	RN7SKP238-201	GRID1	NA	chr10:87399769-87420017	inner
CUST_18721_PI429285431	3.2390716	P	1.2919977	A	3.85591673975062	0	lncRNA	20419-1_{1..2423}	lnc-ZNF131-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ZNF131-1:3	chr5	 43044545	 43046967	+	lnc-ZNF131-1	lnc-ZNF131-1:3	ENSG00000215068	AC025171.1	C5orf39	NA	chr5:43039182-43040447	inter
LNCA_21_P0006670	5.253464	P	6.2444296	P	0.503140908630019	0	lncRNA	XR_109024	XR_109024	XR_109024	NA	NA	LOC100505601	uncharacterized LOC100505601	ENST00000446211	THC2655101	NA	"PREDICTED: Homo sapiens hypothetical LOC100505601 (LOC100505601), miscRNA [XR_109024]"	chr10:35105237-35105296	hs|10p11.21	Agilent_HUMAN_G3V2	XR_109024	XR_109024	chr10	 35105237	 35105296	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20125_PI429285431	1.9286072	A	1.9503536	A	0.985039580028475	0	lncRNA	21773-1_{1..386}	lnc-INHBA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-INHBA-1:1	chr7	 41744882	 41745267	-	lnc-INHBA-1	lnc-INHBA-1:1	ENSG00000236310.1	AC005027.3	INHBA	NA	chr7:41734882-41742706	inter
CUST_19988_PI429285431	3.9381566	P	3.6549857	P	1.21686649870645	0	lncRNA	21641-1_{1..610}	lnc-IL17A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL17A-2:1	chr6	 51487153	 51487762	+	lnc-IL17A-2	lnc-IL17A-2:1	ENSG00000228689.1	RP3-335N17.2	PKHD1	NA	chr6:51480145-51497682	inner
CUST_6269_PI429285431	2.3769565	A	1.0546818	A	2.50060069304635	0	lncRNA	6193-1_{1..712}	"transcript_id ""ENST00000582231.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000582231.1"" | genecode_v17"	chr18	 74334963	 74335674	-	ENSG00000266312.1	ENST00000582231.1	RP11-111H3.3	RP11-111H3.3-001	NA	NA	NA	inter
CUST_35284_PI429285431	3.2721982	P	3.9178362	P	0.639210051606232	0	lncRNA	36686-1_{1..1981}	n342303|BC034299|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4795|NULL|1.3607000|-0.2383716	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342303|BC034299|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4795|NULL|1.3607000|-0.2383716	chr1	147767286	147769266	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012179	0.8783575	A	0.91694725	A	0.973606192989801	0	lncRNA	TCONS_l2_00017131	NA	NA	NA	NA	XLOC_l2_009134	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009134), lincRNA [TCONS_l2_00017131]"	chr21:14823928-14823469	hs|21q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00017131	TCONS_l2_00017131	chr21	 14823469	 14823928	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52168_PI429285431	6.458059	P	7.5775394	P	0.460259562215053	0	lncRNA	55688-1_{1..498}	hg19_lincRNAsTranscripts_TCONS_l2_00017640 range=chr22:23801632-23802909 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017640 range=chr22:23801632-23802909 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 23801632	 23802129	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45733_PI429285431	6.8792186	P	7.3870955	P	0.703256603763451	0	lncRNA	50085-23_{66001..69000}	"gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) (KCNQ1OT1), non-coding RNA"	Chr11	  2695558	  2698557	-	10984	NR_002728.3	NA	NA	NA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-53.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0,hg19_refFlat_ASTN2:range=chr9:119375811-1194140345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-62.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.02;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0,hg19_refFlat_KCNQ1:range=chr11:2466329-28692335'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.90;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
CUST_7331_PI429285431	1.9213358	A	1.6462504	A	1.21006571666013	0	lncRNA	8785-1_{1..316}	"transcript_id ""ENST00000410592.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410592.1"" | genecode_v17"	chr19	 56248651	 56248966	+	ENSG00000222524.1	ENST00000410592.1	RN7SKP109	RN7SKP109-201	NLRP9	NA	chr19:56238651-56249768	inner
CUST_20754_PI429285431	9.3195715	P	9.881156	P	0.67755759903163	0	lncRNA	22388-1_{1..554}	lnc-RP1-170O19.17.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP1-170O19.17.1-2:2	chr7	 27283193	 27283746	-	lnc-RP1-170O19.17.1-2	lnc-RP1-170O19.17.1-2:2	ENSG00000253405.1	EVX1-AS	EVX1	NA	chr7:27282164-27286192	inner
CUST_3744_PI429285431	2.3151748	A	2.9481728	A	0.644835019258474	0	lncRNA	3713-1_{1..2018}	"transcript_id ""ENST00000427035.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427035.1"" | genecode_v17"	chr10	 80760241	 80762258	-	ENSG00000229569.1	ENST00000427035.1	RP11-481G8.2	RP11-481G8.2-001	NA	NA	NA	inter
CUST_27362_PI429285431	1.8645828	A	2.5690706	A	0.61366031777063	0	lncRNA	28925-1_{1..741}	n324524|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040486|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040486|-1.0636100|-0.1666081	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324524|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040486|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040486|-1.0636100|-0.1666081	chr6	 40416181	 40416921	+	NA	NA	NA	NA	LRFN2	NA	chr6:40406181-40465602	inner
CUST_19812_PI429285431	0.9066993	A	0.9126525	A	0.995882058275429	0	lncRNA	21469-1_{1..447}	lnc-GPR151-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-GPR151-2:1	chr5	146298955	146299401	-	lnc-GPR151-2	lnc-GPR151-2:1	ENSG00000249553.1	PPP2R2B-IT1	PPP2R2B	NA	chr5:146288955-146309069	inner
LNCA_21_P0006869	7.226281	P	7.729069	P	0.705741620841725	0	lncRNA	TCONS_00018195	NA	NA	NA	NA	XLOC_008477	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008477), lincRNA [TCONS_00018195]"	chr10:45587890-45587949	hs|10q11.21	Agilent_HUMAN_G3V2	TCONS_00018195	TCONS_00018195	chr10	 45587890	 45587949	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1585_PI429285431	0.92535967	A	0.97916096	A	0.963394578300664	0	lncRNA	1571-1_{1..703}	"transcript_id ""ENST00000467313.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000467313.1"" | genecode_v17"	chr3	181670162	181670864	+	ENSG00000242512.3	ENST00000467313.1	RP11-416O18.1	RP11-416O18.1-004	NA	NA	NA	inter
LNCA_21_P0004384	2.337197	A	3.2385402	P	0.535388033996728	0	lncRNA	TCONS_00010324	NA	NA	NA	NA	XLOC_004806	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004806), lincRNA [TCONS_00010324]"	chr5:43357211-43357152	hs|5p12	Agilent_HUMAN_G3V2	TCONS_00010324	TCONS_00010324	chr5	 43357152	 43357211	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34389_PI429285431	1.04655	A	0.92877793	A	1.08505793108181	0	lncRNA	35873-1_{1..1262}	n341259|BC029292|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3727|NULL|3.5402500|-0.0475774	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341259|BC029292|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3727|NULL|3.5402500|-0.0475774	chr7	 75831217	 75832478	+	NA	NA	NA	NA	SRRM3	NA	chr7:75821217-75916605	inner
CUST_37197_PI429285431	1.422158	A	0.9057639	A	1.43037566772359	0	lncRNA	38309-1_{1..567}	n345629|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1178|NULL|-1.3214400|-0.5326170	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345629|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1178|NULL|-1.3214400|-0.5326170	chr4	 22368194	 22368760	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43175_PI429285431	0.91245997	A	0.91072065	A	1.00120633178765	0	lncRNA	47989-1_{1..1016}	ENST00000602262 havana:sense_intronic chromosome:GRCh37:19:35753749:35755707:1 gene:ENSG00000268947 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602262 havana:sense_intronic chromosome:GRCh37:19:35753749:35755707:1 gene:ENSG00000268947 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 35753749	 35754764	+	ENSG00000268947	ENST00000602262	NA	NA	USF2	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90chr19:35759896-35765707"	NA	inner
CUST_45786_PI429285431	1.7833183	A	1.1260904	A	1.57704945216699	0	lncRNA	50127-2_{3001..3127}	"gi|385862217|ref|NR_047673.1| Homo sapiens leucine rich repeat containing 4C (LRRC4C), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385862217|ref|NR_047673.1| Homo sapiens leucine rich repeat containing 4C (LRRC4C), transcript variant 3, non-coding RNA"	Chr11	 40138749	 40138875	-	57689	NR_047673.1	NA	NA	NA	NA	NA	inter
CUST_26733_PI429285431	8.948303	P	8.715525	P	1.17509549237043	0	lncRNA	28228-1_{1..1161}	n5263|U80579|mRNAlikelncRNA|Homosapiens|ribosomalproteinL7antisensemRNA|NONCODEv2.0|n5263|NULL|-1.5906100|-0.3013508	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n5263|U80579|mRNAlikelncRNA|Homosapiens|ribosomalproteinL7antisensemRNA|NONCODEv2.0|n5263|NULL|-1.5906100|-0.3013508	chr7	108150667	108151827	-	NA	NA	NA	NA	PNPLA8	"hg19_refFlat_RPL7:range=chr8:74203279-742058475'pad=0,hg19_refFlat_RPL7:range=chr8:74203279-742058475'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30chr7:108140667-108161827"	NA	inner
LNCA_21_P0006485	1.0036265	A	1.2817504	A	0.824662722762586	0	lncRNA	TCONS_00017149	NA	NA	NA	NA	XLOC_007946	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007946), lincRNA [TCONS_00017149]"	chrX:28069553-28069612	hs|Xp21.3	Agilent_HUMAN_G3V2	TCONS_00017149	TCONS_00017149	chrX	 28069553	 28069612	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011556	4.9538193	P	4.5826435	P	1.2934065306928	0	lncRNA	TCONS_l2_00010998	NA	NA	NA	NA	XLOC_l2_005915	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005915), lincRNA [TCONS_l2_00010998]"	chr17:76486699-76486758	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_l2_00010998	TCONS_l2_00010998	chr17	 76486699	 76486758	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004858	3.8951	P	3.7699547	P	1.0906175679031	0	lncRNA	THC2768400	NA	NA	NA	NA	XLOC_005209	NA	NA	THC2768400	NA	"BROAD Institute lincRNA (XLOC_005209), lincRNA [TCONS_00011744]"	chr6:026340367-026340426	hs|6p22.2	Agilent_HUMAN_G3V2	THC2768400	THC2768400	chr6	 26340367	 26340426	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16785_PI429285431	2.4660046	A	0.9160543	A	2.92807051983765	0	lncRNA	18494-1_{1..649}	lnc-C1orf196-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf196-1:1	chr1	 14532818	 14533466	+	lnc-C1orf196-1	lnc-C1orf196-1:1	XLOC_000057	linc-KAZ	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80"	NA	inter
LNCA_21_P0004961	0.884525	A	0.89175045	A	0.995004220329079	0	lncRNA	TCONS_00012001	NA	NA	NA	NA	XLOC_005514	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005514), lincRNA [TCONS_00012001]"	chr6:156674823-156674882	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_00012001	TCONS_00012001	chr6	156674823	156674882	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38251_PI429285431	0.90482235	A	0.89405555	A	1.00749089448279	0	lncRNA	39309-1_{1..840}	n381775|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pqc.2||-0.1510980|-0.3134507	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381775|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pqc.2||-0.1510980|-0.3134507	chr11	116941485	116942324	-	NA	NA	NA	NA	SIK3	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.82;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-28.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70chr11:116931485-116952325"	NA	inner
LNCA_21_P0009834	0.88024116	A	0.8820443	A	0.998750939319321	0	lncRNA	ENST00000438222	NA	NA	NA	NA	XLOC_013481	NA	ENST00000438222	NA	NA	"BROAD Institute lincRNA (XLOC_013481), lincRNA [TCONS_00027911]"	chr20:21951346-21951405	hs|20p11.22	Agilent_HUMAN_G3V2	ENST00000438222	ENST00000438222	chr20	 21951346	 21951405	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25336_PI429285431	0.89359856	A	0.9021415	A	0.994095982839424	0	lncRNA	26867-1_{1..612}	lnc-ZBTB38-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZBTB38-1:1	chr3	141244576	141245187	+	lnc-ZBTB38-1	lnc-ZBTB38-1:1	ENSG00000250170.1	RASA2-IT1	RASA2	"hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40chr3:141234576-141254963"	NA	inner
LNCA_24_P932875	0.87976635	A	0.88086534	A	0.999238528246913	0	lncRNA	XR_110047	XR_110047	XR_110047	   389102	Hs.526966	YPLR6490	uncharacterized LOC389102	NA	NA	GO:0005576	"PREDICTED: Homo sapiens hypothetical LOC389102 (YPLR6490), miscRNA [XR_110047]"	chr3:32858126-32858067	hs|3p22.3	Agilent_HUMAN_G3V2	XR_110047	XR_110047	chr3	 32858067	 32858126	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41106_PI429285431	4.754454	P	5.140122	P	0.765424507856154	0	lncRNA	41851-1_{1..89}	ENST00000516886 ncrna:miRNA chromosome:GRCh37:13:24736555:24736643:1 gene:ENSG00000252695 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516886 ncrna:miRNA chromosome:GRCh37:13:24736555:24736643:1 gene:ENSG00000252695 gene_biotype:miRNA transcript_biotype:miRNA	chr13	 24736555	 24736643	+	ENSG00000252695	ENST00000516886	NA	NA	SPATA13	NA	chr13:24734861-24746643	inner
CUST_44564_PI429285431	1.805205	A	0.91894984	A	1.84837202541101	0	lncRNA	49146-1_{1..486}	"gi|401709993|ref|NR_028375.2| Homo sapiens non-protein coding RNA, upstream of F2R/PAR1 (NCRUPAR), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|401709993|ref|NR_028375.2| Homo sapiens non-protein coding RNA, upstream of F2R/PAR1 (NCRUPAR), non-coding RNA"	Chr5	 76008228	 76008713	+	100302746	NR_028375.2	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70"	NA	inter
LNCA_21_P0006800	1.5049436	A	2.3325648	A	0.563457538578779	0	lncRNA	ENST00000456514	NA	NA	NA	NA	XLOC_008985	NA	ENST00000456514	THC2757544	NA	"BROAD Institute lincRNA (XLOC_008985), lincRNA [TCONS_00018066]"	chr10:128102888-128102829	hs|10q26.2	Agilent_HUMAN_G3V2	ENST00000456514	ENST00000456514	chr10	128102829	128102888	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32567_PI429285431	6.4507284	P	6.743287	P	0.816452805894662	0	lncRNA	34231-1_{1..754}	n339184|AF086410|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1615|NULL|-1.1739100|-0.2440530	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339184|AF086410|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1615|NULL|-1.1739100|-0.2440530	chr2	237483125	237483878	+	NA	NA	NA	NA	CXCR7	NA	chr2:237478380-237490997	inner
CUST_26088_PI429285431	2.6455667	A	2.9052985	A	0.835243178435457	0	lncRNA	27601-1_{1..1091}	lnc-WHAMM-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WHAMM-3:1	chr15	 83418048	 83419138	+	lnc-WHAMM-3	lnc-WHAMM-3:1	ENSG00000259442.1	RP11-752G15.8	FSD2	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80chr15:83428024-83429041"	NA	inter
CUST_49452_PI429285431	3.7399747	A	1.4923553	A	4.74898566048668	0	lncRNA	53252-1_{1..2851}	hg19_lincRNAsTranscripts_TCONS_l2_00024638 range=chr6:19323614-19539198 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024638 range=chr6:19323614-19539198 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 19323614	 19326464	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21162_PI429285431	1.6037381	A	0.8930073	A	1.63663294680146	0	lncRNA	22785-1_{1..516}	lnc-C6orf99-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C6orf99-2:1	chr6	159664218	159664733	+	lnc-C6orf99-2	lnc-C6orf99-2:1	ENSG00000235086.1	FNDC1-IT1	FNDC1	NA	chr6:159654218-159674361	inner
LNCA_21_P0014184	0.88002187	A	0.87335366	A	1.00463274911454	0	lncRNA	XR_108740	XR_108740	XR_108740	NA	Hs.729535	LOC100505938	uncharacterized LOC100505938	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505938 (LOC100505938), miscRNA [XR_108740]"	chr7:8384078-8384137	hs|7p21.3	Agilent_HUMAN_G3V2	XR_108740	XR_108740	chr7	  8384078	  8384137	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4340_PI429285431	0.8949083	A	0.8899443	A	1.00344670889184	0	lncRNA	4295-1_{1..801}	"transcript_id ""ENST00000551699.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551699.1"" | genecode_v17"	chr12	 81672968	 81673768	+	ENSG00000257467.1	ENST00000551699.1	RP11-121G22.3	RP11-121G22.3-008	PPFIA2	NA	chr12:81662968-81696676	inner
LNCA_21_P0007091	0.8804239	A	0.8739362	A	1.00450705733087	0	lncRNA	TCONS_00018868	NA	NA	NA	NA	XLOC_008691	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008691), lincRNA [TCONS_00018868]"	chr10:3094799-3094740	hs|10p15.2	Agilent_HUMAN_G3V2	TCONS_00018868	TCONS_00018868	chr10	  3094740	  3094799	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007111	1.7303174	A	0.9251571	A	1.74733993059621	0	lncRNA	TCONS_00018994	NA	NA	NA	NA	XLOC_008894	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008894), lincRNA [TCONS_00018994]"	chr10:89584536-89584477	hs|10q23.31	Agilent_HUMAN_G3V2	TCONS_00018994	TCONS_00018994	chr10	 89584477	 89584536	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009080	5.835353	P	6.114559	P	0.824044412635701	0	lncRNA	TCONS_00024755	NA	NA	NA	NA	XLOC_012039	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012039), lincRNA [TCONS_00024755]"	chr16:85995498-85995141	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024755	TCONS_00024755	chr16	 85995141	 85995498	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008361	4.450135	P	4.603803	P	0.898961976311979	0	lncRNA	TCONS_00022564	NA	NA	NA	NA	XLOC_010883	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010883), lincRNA [TCONS_00022564]"	chr14:80412413-80412472	hs|14q31.1	Agilent_HUMAN_G3V2	TCONS_00022564	TCONS_00022564	chr14	 80412413	 80412472	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21971_PI429285431	1.1941991	A	1.487736	A	0.815899352112079	0	lncRNA	23579-1_{1..222}	lnc-GNRHR2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNRHR2-1:6	chr1	145493860	145494081	-	lnc-GNRHR2-1	lnc-GNRHR2-1:6	ENSG00000234222.1	RP11-315I20.1	LIX1L	NA	chr1:145483860-145499091	inner
CUST_31295_PI429285431	7.674563	P	7.9620185	P	0.819345875917403	0	lncRNA	33081-1_{1..3000}	n337755|AL832095|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|137|NULL|2.3838800|-0.4339961	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337755|AL832095|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|137|NULL|2.3838800|-0.4339961	chrX	 72783344	 72786343	+	NA	NA	NA	NA	CHIC1	NA	chrX:72773344-72906937	inner
LNCA_33_P3297834	5.9071116	P	6.858578	P	0.517106591527315	0	lncRNA	XR_132763	XR_132763	XR_132763	100652742	NA	LOC100652742	uncharacterized LOC100652742	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652742 (LOC100652742), miscRNA [XR_132763]"	chr5:142065991-142066050	hs|5q31.3	Agilent_HUMAN_G3V2	XR_132763	XR_132763	chr5	142065991	142066050	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7071_PI429285431	1.1234016	A	0.9121097	A	1.15772443528836	0	lncRNA	7016-1_{1..451}	"transcript_id ""ENST00000458170.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000458170.1"" | genecode_v17"	chrX	 72027259	 72027709	-	ENSG00000225396.1	ENST00000458170.1	RP11-69A21.2	RP11-69A21.2-002	NA	NA	NA	inter
CUST_46061_PI429285431	9.36138	P	9.5906105	P	0.853089788705045	0	lncRNA	50336-1_{1..780}	"gi|315113899|ref|NR_037657.1| Homo sapiens biogenesis of lysosomal organelles complex-1, subunit 1 (BLOC1S1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315113899|ref|NR_037657.1| Homo sapiens biogenesis of lysosomal organelles complex-1, subunit 1 (BLOC1S1), transcript variant 4, non-coding RNA"	Chr12	 56110076	 56110855	+	2647	NR_037657.1	NA	NA	NA	NA	NA	inter
CUST_27660_PI429285431	0.91733587	A	0.9294782	A	0.991618897117298	0	lncRNA	29238-1_{1..1725}	n324867|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171048|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171048|-0.2583810|-0.3920602	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324867|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171048|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171048|-0.2583810|-0.3920602	chr21	 23655296	 23657020	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10"	NA	inter
CUST_32335_PI429285431	12.84546	P	12.527428	P	1.24662884508105	0	lncRNA	34017-1_{1..1439}	n338915|BC034928|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1341|NULL|-1.0162300|-0.1265576	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338915|BC034928|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1341|NULL|-1.0162300|-0.1265576	chr2	 97368082	 97369520	-	NA	NA	NA	NA	LMAN2L	"hg19_refFlat_FER1L5:range=chr2:97308574-973704295'pad=0,hg19_refFlat_FER1L5:range=chr2:97308574-973704295'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.80chr2:97371666-97379440"	NA	inner
CUST_39456_PI429285431	1.9771254	A	1.0685059	A	1.87724831916541	0	lncRNA	40400-1_{1..1371}	n386962|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vgc.1||-1.0491800|-0.2494733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n386962|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010vgc.1||-1.0491800|-0.2494733	chr16	 34597786	 34599156	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003659	1.976063	A	2.163365	A	0.878246605239177	0	lncRNA	TCONS_00008275	NA	NA	NA	NA	XLOC_003718	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003718), lincRNA [TCONS_00008275]"	chr4:145773709-145773768	hs|4q31.21	Agilent_HUMAN_G3V2	TCONS_00008275	TCONS_00008275	chr4	145773709	145773768	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009963	2.8764489	A	2.3087726	A	1.48213442340976	0	lncRNA	TCONS_00028196	NA	NA	NA	NA	XLOC_013547	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013547), lincRNA [TCONS_00028196]"	chr20:46698516-46698575	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028196	TCONS_00028196	chr20	 46698516	 46698575	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29033_PI429285431	1.8335829	A	2.081305	A	0.842225172114554	0	lncRNA	30762-1_{1..2272}	n326523|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029604|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029604|-1.1317000|-0.2924965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326523|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000029604|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000029604|-1.1317000|-0.2924965	chr1	 94859294	 94861565	-	NA	NA	NA	NA	ABCD3	NA	chr1:94871943-94872328	inter
CUST_20697_PI429285431	4.762528	P	5.344901	P	0.667864344620221	0	lncRNA	22333-1_{1..472}	lnc-TOX4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TOX4-1:1	chr14	 21990540	 21991011	+	lnc-TOX4-1	lnc-TOX4-1:1	ENSG00000257096.1	AE000658.22	SALL2	NA	chr14:21989231-22000794	inner
LNCA_21_P0003728	1.05571	A	1.8283083	A	0.585362284697293	0	lncRNA	TCONS_00008447	NA	NA	NA	NA	XLOC_003906	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003906), lincRNA [TCONS_00008447]"	chr4:23394691-23394632	hs|4p15.2	Agilent_HUMAN_G3V2	TCONS_00008447	TCONS_00008447	chr4	 23394632	 23394691	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5810_PI429285431	9.651224	P	9.409294	P	1.18257362002216	0	lncRNA	5737-1_{1..307}	"transcript_id ""ENST00000577546.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000577546.1"" | genecode_v17"	chr17	 32007596	 32007902	+	ENSG00000264643.1	ENST00000577546.1	RP11-118G23.2	RP11-118G23.2-001	ACCN1	NA	chr17:31997596-32017902	inner
CUST_30411_PI429285431	0.9070323	A	0.909873	A	0.998032914058648	0	lncRNA	32191-1_{1..617}	n335544|BC071638|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264466|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264466|2.2727200|-0.0349802	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n335544|BC071638|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000264466|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000264466|2.2727200|-0.0349802	chr1	149821774	149822390	-	NA	NA	NA	NA	HIST2H4B	NA	chr1:149832330-149832391	inter
LNCA_21_P0010636	1.2360537	A	0.9066301	A	1.25651126023602	0	lncRNA	TCONS_l2_00001394	NA	NA	NA	NA	XLOC_l2_001011	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001011), lincRNA [TCONS_l2_00001394]"	chr1:95187237-95187178	hs|1p21.3	Agilent_HUMAN_G3V2	TCONS_l2_00001394	TCONS_l2_00001394	chr1	 95187178	 95187237	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20316_PI429285431	2.5773485	A	2.9443676	A	0.775382940898115	0	lncRNA	21959-1_{1..285}	lnc-TSTD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSTD2-1:1	chr9	100398245	100398529	-	lnc-TSTD2-1	lnc-TSTD2-1:1	ENSG00000231521.1	RP11-244N9.4	NCBP1	NA	chr9:100395705-100408333	inner
CUST_42817_PI429285431	10.0258875	P	9.752001	P	1.20906055263199	0	lncRNA	45823-1_{1..178}	ENST00000408493 ncrna:snoRNA chromosome:GRCh37:3:186504464:186504641:1 gene:ENSG00000221420 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408493 ncrna:snoRNA chromosome:GRCh37:3:186504464:186504641:1 gene:ENSG00000221420 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	186504464	186504641	+	ENSG00000221420	ENST00000408493	NA	NA	RFC4	NA	chr3:186507681-186514641	inter
CUST_23008_PI429285431	3.866236	P	3.9308627	P	0.956192702210234	0	lncRNA	24581-1_{1..3000}	lnc-DNASE1L3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DNASE1L3-1:1	chr3	 58156224	 58159223	-	lnc-DNASE1L3-1	lnc-DNASE1L3-1:1	ENSG00000244161.1	FLNB-AS1	FLNB	"hg19_refFlat_FLNB:range=chr3:57994292-581564895'pad=0,hg19_refFlat_FLNB:range=chr3:57994292-581564895'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.10chr3:58146224-58157982"	NA	inner
LNCA_21_P0007425	7.0497856	P	7.140868	P	0.938818124879302	0	lncRNA	ENST00000530648	NA	NA	NA	NA	CD81	CD81 molecule	ENST00000530648	NA	GO:0005515|GO:0008284|GO:0005886|GO:0006661|GO:0008283|GO:0046488|GO:0009611|GO:0050731|GO:0046718|GO:0000187|GO:0016324|GO:0008104|GO:0005887|GO:0044419|GO:0050776|GO:0043128|GO:0046813|GO:0040008	"BROAD Institute lincRNA (XLOC_009027), lincRNA [TCONS_00019823]"	chr11:2398092-2398150	hs|11p15.5	Agilent_HUMAN_G3V2	ENST00000530648	ENST00000530648	chr11	  2398092	  2398150	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42517_PI429285431	5.1614394	P	5.115675	P	1.03222995291485	0	lncRNA	45307-1_{1..125}	ENST00000408712 ncrna:snoRNA chromosome:GRCh37:4:74129677:74129801:1 gene:ENSG00000221639 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408712 ncrna:snoRNA chromosome:GRCh37:4:74129677:74129801:1 gene:ENSG00000221639 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	 74129677	 74129801	+	ENSG00000221639	ENST00000408712	NA	NA	ANKRD17	NA	chr4:74119677-74124502	inter
CUST_11985_PI429285431	0.91573745	A	0.91921955	A	0.997589302611872	0	lncRNA	13565-1_{1..1164}	lnc-GDE1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GDE1-3:3	chr16	 19404698	 19405861	-	lnc-GDE1-3	lnc-GDE1-3:3	XLOC_011889	linc-SMG1	NA	NA	NA	inter
LNCA_21_P0009399	4.5732484	P	4.9112644	P	0.791128527240667	0	lncRNA	TCONS_00026002	NA	NA	NA	NA	XLOC_012348	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012348), lincRNA [TCONS_00026002]"	chr17:80340502-80340827	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_00026002	TCONS_00026002	chr17	 80340502	 80340827	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007535	0.8804356	A	0.9085709	A	0.980687028087053	0	lncRNA	TCONS_00020358	NA	NA	NA	NA	XLOC_009689	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009689), lincRNA [TCONS_00020358]"	chr12:24857655-24893680	hs|12p12.1	Agilent_HUMAN_G3V2	TCONS_00020358	TCONS_00020358	chr12	 24857655	 24893680	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8071_PI429285431	0.8901522	A	0.88300234	A	1.00496820611123	0	lncRNA	9678-1_{1..425}	lnc-OXT-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OXT-1:2	chr20	  3097135	  3097559	+	lnc-OXT-1	lnc-OXT-1:2	ENSG00000235958	RP5-1187M17.7	UBOX5	NA	chr20:3088219-3107369	inner
LNCA_21_P0011494	5.822704	P	5.7469883	P	1.05388372266272	0	lncRNA	TCONS_l2_00010379	NA	NA	NA	NA	XLOC_l2_005606	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005606), lincRNA [TCONS_l2_00010379]"	chr16:89981644-89981585	hs|16q24.3	Agilent_HUMAN_G3V2	TCONS_l2_00010379	TCONS_l2_00010379	chr16	 89981585	 89981644	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25573_PI429285431	0.8984188	A	0.88671434	A	1.00814591230989	0	lncRNA	27102-1_{1..477}	lnc-RPL27A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPL27A-2:2	chr11	  8831624	  8832100	+	lnc-RPL27A-2	lnc-RPL27A-2:2	ENSG00000255159.1	RP11-318C2.1	ST5	NA	chr11:8821624-8841776	inner
CUST_30159_PI429285431	1.8527802	A	1.0730495	A	1.71681037535203	0	lncRNA	31933-1_{1..370}	n334835|AJ301581|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246864|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246864|1.3476400|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334835|AJ301581|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000246864|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000246864|1.3476400|-1.0000000	chr9	   977137	   977506	+	NA	NA	NA	NA	DMRT1	NA	chr9:967137-969090	inner
CUST_31762_PI429285431	5.398697	P	5.5676646	P	0.889478969204396	0	lncRNA	33503-1_{1..1950}	n338302|AF090883|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|696|NULL|0.1445380|-0.2062796	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338302|AF090883|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|696|NULL|0.1445380|-0.2062796	chr19	 10199707	 10201656	-	NA	NA	NA	NA	ANGPTL6	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_C19orf66:range=chr19:10197104-102029785'pad=0,hg19_refFlat_C19orf66:range=chr19:10197104-102029785'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60chr19:10203013-10211059"	NA	inner
CUST_32169_PI429285431	1.3844283	A	0.90952796	A	1.3898222089311	0	lncRNA	33869-1_{1..2272}	n338740|AL713663|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1161|NULL|-1.0338500|-0.3197281	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338740|AL713663|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1161|NULL|-1.0338500|-0.3197281	chr2	 31366724	 31368995	-	NA	NA	NA	NA	GALNT14	NA	chr2:31356724-31361571	inter
CUST_42123_PI429285431	0.9009809	A	0.8863021	A	1.01022650575529	0	lncRNA	44108-1_{1..74}	ENST00000516337 ncrna:miRNA chromosome:GRCh37:1:44798777:44798850:-1 gene:ENSG00000252146 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516337 ncrna:miRNA chromosome:GRCh37:1:44798777:44798850:-1 gene:ENSG00000252146 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 44798777	 44798850	-	ENSG00000252146	ENST00000516337	NA	NA	ERI3	NA	chr1:44788777-44808850	inner
CUST_21899_PI429285431	1.4535884	A	0.87789017	A	1.49039860598871	0	lncRNA	23508-1_{1..572}	lnc-KCNMB4-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNMB4-1:6	chr12	 70921455	 70922026	+	lnc-KCNMB4-1	lnc-KCNMB4-1:6	ENSG00000258168.1	RP11-588H23.3	PTPRB	NA	chr12:70911455-70931529	inner
LNCA_21_P0014505	0.8801757	A	0.87343466	A	1.00468346617386	0	lncRNA	XR_110136	XR_110136	XR_110136	NA	NA	LOC100505948	uncharacterized LOC100505948	NA	THC2641783	NA	"PREDICTED: Homo sapiens hypothetical LOC100505948 (LOC100505948), miscRNA [XR_110136]"	chr16:34213224-34213165	hs|16p11.2	Agilent_HUMAN_G3V2	XR_110136	XR_110136	chr16	 34213165	 34213224	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46734_PI429285431	6.981591	P	5.455266	P	2.88051146492514	0	lncRNA	50886-2_{3001..3483}	"gi|378925608|ref|NR_046397.1| Homo sapiens XIAP associated factor 1 (XAF1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378925608|ref|NR_046397.1| Homo sapiens XIAP associated factor 1 (XAF1), transcript variant 4, non-coding RNA"	Chr17	  6662156	  6662638	+	54739	NR_046397.1	NA	NA	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00"	NA	inter
CUST_33300_PI429285431	0.8985584	A	1.3684993	A	0.721994173645603	0	lncRNA	34883-1_{1..372}	n340016|U58667|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2469|NULL|-1.1664900|-0.3319832	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340016|U58667|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2469|NULL|-1.1664900|-0.3319832	chr10	 38080509	 38080880	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_13237_PI429285431	3.8892179	P	3.5999718	P	1.22200153722021	0	lncRNA	14865-1_{1..2243}	lnc-SUPT3H-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUPT3H-1:1	chr6	 45544796	 45547038	-	lnc-SUPT3H-1	lnc-SUPT3H-1:1	XLOC_005737	linc-SUPT3H	NA	"hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90"	NA	inter
LNCA_21_P0014276	5.868134	P	6.351526	P	0.715293878462018	0	lncRNA	XR_109078	XR_109078	XR_109078	NA	Hs.608000	LOC100506720	uncharacterized LOC100506720	ENST00000528982	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506720 (LOC100506720), miscRNA [XR_109078]"	chr11:823717-823658	hs|11p15.5	Agilent_HUMAN_G3V2	XR_109078	XR_109078	chr11	   823658	   823717	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9045_PI429285431	9.57439	P	9.438503	P	1.09876815249706	0	lncRNA	10570-1_{1..543}	lnc-MAP1LC3B2-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP1LC3B2-2:5	chr12	116971771	116972313	+	lnc-MAP1LC3B2-2	lnc-MAP1LC3B2-2:5	ENSG00000196668	XLOC_009897	NA	NA	NA	inter
CUST_16267_PI429285431	1.0498732	A	2.0214317	A	0.509954876298597	0	lncRNA	17970-1_{1..1183}	lnc-SDIM1-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SDIM1-3:6	chr6	166324296	166325478	-	lnc-SDIM1-3	lnc-SDIM1-3:6	XLOC_005918	linc-PDE10A-4	NA	NA	NA	inter
CUST_27428_PI429285431	0.9220827	A	0.95979017	A	0.974201783852576	0	lncRNA	28993-1_{1..746}	n324598|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039801|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039801|-1.3483000|-0.3961883	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324598|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039801|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039801|-1.3483000|-0.3961883	chr6	  8287168	  8287913	-	NA	NA	NA	NA	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-11.90;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20"	NA	inter
CUST_7062_PI429285431	0.90002435	A	0.90800333	A	0.994484658163119	0	lncRNA	7007-1_{1..581}	"transcript_id ""ENST00000604062.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604062.1"" | genecode_v17"	chrX	 53123330	 53123910	+	ENSG00000232593.2	ENST00000604062.1	RP11-258C19.5	RP11-258C19.5-004	TSPYL2	NA	chrX:53113330-53117728	inter
CUST_38955_PI429285431	2.771169	A	1.13253	A	3.11371953276329	0	lncRNA	39941-1_{1..3000}	n385130|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003teu.3||-0.0574725|-0.3113600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385130|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003teu.3||-0.0574725|-0.3113600	chr7	 35734847	 35737846	+	NA	NA	NA	NA	HERPUD2	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.20;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20chr7:35724847-35734772"	NA	inter
CUST_20437_PI429285431	6.2323027	P	6.332974	P	0.932598943224547	0	lncRNA	22081-1_{1..566}	lnc-PELI2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PELI2-2:2	chr14	 56811692	 56812257	+	lnc-PELI2-2	lnc-PELI2-2:2	ENSG00000259719.1	RP11-930O11.1	NA	NA	NA	inter
CUST_8826_PI429285431	1.2768165	A	1.9091543	A	0.645130173459894	0	lncRNA	10367-1_{1..906}	lnc-TFAP2A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TFAP2A-2:2	chr6	 10434875	 10435780	-	lnc-TFAP2A-2	lnc-TFAP2A-2:2	ENSG00000183674	XLOC_005602	NA	NA	NA	inter
CUST_49560_PI429285431	0.8997782	A	0.90421176	A	0.996931607554144	0	lncRNA	53350-1_{1..1273}	hg19_lincRNAsTranscripts_TCONS_l2_00024368 range=chr6:109629773-109635457 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024368 range=chr6:109629773-109635457 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	109629773	109631045	+	NA	NA	NA	NA	NA	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30"	NA	inter
LNCA_21_P0014172	5.6580687	P	5.46459	P	1.14351770257214	0	lncRNA	ENST00000289352	XR_108687	XR_108687	NA	NA	LOC100507025	NA	ENST00000289352	THC2472984	NA	"PREDICTED: Homo sapiens hypothetical LOC100507025 (LOC100507025), miscRNA [XR_108687]"	chr6:26281345-26281286	hs|6p22.2	Agilent_HUMAN_G3V2	ENST00000289352	ENST00000289352	chr6	 26281286	 26281345	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010153	5.3662367	P	6.6256065	P	0.41772639167387	0	lncRNA	ENST00000433344	NA	NA	NA	NA	XLOC_013898	NA	ENST00000433344	NA	NA	"BROAD Institute lincRNA (XLOC_013898), lincRNA [TCONS_00028826]"	chr21:29357548-29357607	hs|21q21.3	Agilent_HUMAN_G3V2	ENST00000433344	ENST00000433344	chr21	 29357548	 29357607	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47788_PI429285431	1.5454881	A	1.2142069	A	1.25813017384915	0	lncRNA	51710-1_{1..3000}	"gi|346644734|ref|NR_045128.1| Homo sapiens taxilin gamma 2, pseudogene (TXLNG2P), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|346644734|ref|NR_045128.1| Homo sapiens taxilin gamma 2, pseudogene (TXLNG2P), transcript variant 1, non-coding RNA"	ChrY	 21729244	 21732243	+	246126	NR_045128.1	NA	NA	NA	NA	NA	inter
CUST_34336_PI429285431	0.90724486	A	0.91776776	A	0.992732617600484	0	lncRNA	35829-1_{1..1109}	n341201|BC038209|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3668|NULL|-1.3312600|-0.3625514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341201|BC038209|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3668|NULL|-1.3312600|-0.3625514	chr7	 20371599	 20372707	+	NA	NA	NA	NA	ITGB8	NA	chr7:20370725-20402980	inner
CUST_36334_PI429285431	3.780002	P	3.6622934	P	1.08501019603729	0	lncRNA	37565-1_{1..1635}	n344862|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_411|NULL|-1.3105700|-0.3017558	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344862|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_411|NULL|-1.3105700|-0.3017558	chr5	172878044	172879678	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009421	2.922845	A	0.89594215	A	4.07529035023685	0	lncRNA	BC034625	NA	BC034625	NA	Hs.385522	XLOC_012665	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012665), lincRNA [TCONS_00026191]"	chr18:37679085-37679144	hs|18q12.3	Agilent_HUMAN_G3V2	BC034625	BC034625	chr18	 37679085	 37679144	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26759_PI429285431	3.1125834	A	1.3480518	A	3.39763670627862	0	lncRNA	28258-1_{1..305}	n323810|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058397|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058397|-1.1567300|-0.1890549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323810|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058397|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058397|-1.1567300|-0.1890549	chrX	134056680	134056984	-	NA	NA	NA	NA	MOSPD1	"hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40chrX:134046680-134049297"	NA	inter
CUST_18415_PI429285431	0.9845209	A	0.8925636	A	1.065815190259	0	lncRNA	20140-1_{1..421}	lnc-TLX1-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TLX1-2:6	chr10	102998277	102998697	+	lnc-TLX1-2	lnc-TLX1-2:6	ENSG00000227128	RP11-107I14.1	LBX1	NA	chr10:102988277-102988717	inter
CUST_13024_PI429285431	0.8974192	A	1.0932434	A	0.873073973320556	0	lncRNA	14652-1_{1..2007}	lnc-SLC30A10-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SLC30A10-2:1	chr1	219632200	219634206	-	lnc-SLC30A10-2	lnc-SLC30A10-2:1	XLOC_001208	linc-GPATCH2-9	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70"	NA	inter
LNCA_21_P0013086	0.881749	A	2.2859118	A	0.377837342859789	0	lncRNA	XR_108619	XR_108619	XR_108619	NA	Hs.730067	LOC728052	uncharacterized LOC728052	ENST00000419979	THC2662851	NA	"PREDICTED: Homo sapiens hypothetical LOC728052 (LOC728052), miscRNA [XR_108619]"	chr6:69342796-69342737	hs|6q12	Agilent_HUMAN_G3V2	XR_108619	XR_108619	chr6	 69342737	 69342796	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005935	0.88087326	A	0.9134126	A	0.977697900579447	0	lncRNA	TCONS_00015268	NA	NA	NA	NA	XLOC_006765	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006765), lincRNA [TCONS_00015268]"	chr8:31248287-31249450	hs|8p12	Agilent_HUMAN_G3V2	TCONS_00015268	TCONS_00015268	chr8	 31248287	 31249450	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006122	0.88037425	A	0.8821059	A	0.998800431742682	0	lncRNA	TCONS_00015913	NA	NA	NA	NA	XLOC_007276	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007276), lincRNA [TCONS_00015913]"	chr9:7177892-7177951	hs|9p24.1	Agilent_HUMAN_G3V2	TCONS_00015913	TCONS_00015913	chr9	  7177892	  7177951	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38599_PI429285431	6.545452	P	6.6315737	P	0.942051802819859	0	lncRNA	39608-1_{1..3000}	n383702|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tfr.3||2.8907900|-0.1792566	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n383702|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tfr.3||2.8907900|-0.1792566	chr2	111132686	111135685	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZBTB45:range=chr19:59025421-590290405'pad=0,hg19_refFlat_ZBTB45:range=chr19:59025421-590290405'pad=0 3'pad=0 strand=- repeatMasking=none,-101.60"	NA	inter
CUST_4584_PI429285431	1.9133632	A	2.0619524	A	0.902132219327539	0	lncRNA	4533-1_{1..149}	"transcript_id ""ENST00000441659.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441659.1"" | genecode_v17"	chr13	 32559822	 32559970	+	ENSG00000235822.1	ENST00000441659.1	RP11-207N4.3	RP11-207N4.3-001	NA	NA	NA	inter
CUST_3762_PI429285431	1.3267863	A	1.0805438	A	1.18611385438831	0	lncRNA	3730-1_{1..368}	"transcript_id ""ENST00000428166.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428166.1"" | genecode_v17"	chr10	 91406046	 91406413	-	ENSG00000225836.1	ENST00000428166.1	RP11-80H5.6	RP11-80H5.6-001	PANK1	NA	chr10:91396046-91405329	inter
LNCA_21_P0005871	0.87908316	A	0.87266237	A	1.00446047090287	0	lncRNA	TCONS_00015092	NA	NA	NA	NA	XLOC_007154	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007154), lincRNA [TCONS_00015092]"	chr8:92477126-92477067	hs|8q21.3	Agilent_HUMAN_G3V2	TCONS_00015092	TCONS_00015092	chr8	 92477067	 92477126	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44531_PI429285431	1.4378176	A	1.0582447	A	1.30095665910593	0	lncRNA	49126-1_{1..1210}	"gi|310119527|ref|XR_108577.1| PREDICTED: Homo sapiens uncharacterized LOC100506674 (LOC100506674), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310119527|ref|XR_108577.1| PREDICTED: Homo sapiens uncharacterized LOC100506674 (LOC100506674), misc_RNA"	Chr5	 44744517	 44745726	-	100506674	XR_108577.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0002294	6.8780265	P	7.27562	P	0.759123490276807	0	lncRNA	ENST00000536500	NA	AK302966	NA	NA	XLOC_001680	NA	ENST00000536500	NA	NA	"BROAD Institute lincRNA (XLOC_001680), lincRNA [TCONS_00003878]"	chr19:44871322-44871263	hs|19q13.31	Agilent_HUMAN_G3V2	ENST00000536500	ENST00000536500	chr19	 44871263	 44871322	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002956	3.3672836	P	3.7571945	P	0.7631767363727	0	lncRNA	TCONS_00006009	NA	NA	NA	NA	XLOC_002636	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002636), lincRNA [TCONS_00006009]"	chr3:47206072-47206657	hs|3p21.31	Agilent_HUMAN_G3V2	TCONS_00006009	TCONS_00006009	chr3	 47206072	 47206657	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17468_PI429285431	0.8887415	A	0.87893236	A	1.00682234461914	0	lncRNA	19194-1_{1..663}	lnc-TRIML2-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIML2-6:3	chr4	189717871	189718533	-	lnc-TRIML2-6	lnc-TRIML2-6:3	XLOC_004227	linc-TRIML2-2	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60"	NA	inter
CUST_36846_PI429285431	3.8908007	P	4.576876	P	0.621542392832452	0	lncRNA	38011-1_{1..722}	n345319|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_868|NULL|-1.2784300|-0.3456797	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345319|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_868|NULL|-1.2784300|-0.3456797	chr15	 96793549	 96794270	-	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30"	NA	inter
CUST_27274_PI429285431	4.169156	P	4.078639	P	1.0647516754084	0	lncRNA	28830-1_{1..327}	n324423|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041725|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041725|-1.3721200|-0.3160340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324423|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041725|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041725|-1.3721200|-0.3160340	chr6	109187356	109187682	+	NA	NA	NA	NA	ARMC2	NA	chr6:109177356-109206901	inner
CUST_35878_PI429285431	2.6901112	A	2.6932712	A	0.997812051964793	0	lncRNA	37267-1_{1..3000}	n344540|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_88|NULL|-1.3060100|-0.2658911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n344540|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_88|NULL|-1.3060100|-0.2658911	chrX	149109419	149112418	+	NA	NA	NA	NA	CXorf40B	NA	chrX:149100415-149106716	inter
CUST_18323_PI429285431	8.306695	P	8.475882	P	0.889343710648655	0	lncRNA	20052-1_{1..410}	lnc-SMUG1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SMUG1-3:1	chr12	 54519544	 54519953	-	lnc-SMUG1-3	lnc-SMUG1-3:1	ENSG00000250432	RP11-834C11.5	NA	NA	NA	inter
CUST_44073_PI429285431	0.89491093	A	0.8969558	A	0.998583608155996	0	lncRNA	48743-1_{1..3000}	"gi|381214356|ref|NR_046477.1| Homo sapiens DIS3 mitotic control homolog (S. cerevisiae)-like 2 (DIS3L2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|381214356|ref|NR_046477.1| Homo sapiens DIS3 mitotic control homolog (S. cerevisiae)-like 2 (DIS3L2), transcript variant 5, non-coding RNA"	Chr2	232826293	232829292	+	129563	NR_046477.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008243	2.2802796	A	2.4539137	A	0.88660653409507	0	lncRNA	TCONS_00022214	NA	NA	NA	NA	XLOC_010490	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010490), lincRNA [TCONS_00022214]"	chr13:107279438-107280267	hs|13q33.3	Agilent_HUMAN_G3V2	TCONS_00022214	TCONS_00022214	chr13	107279438	107280267	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31665_PI429285431	12.329092	P	13.107293	P	0.583093441150298	0	lncRNA	33415-1_{1..2058}	n338189|AK123275|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|580|NULL|-0.9654100|-0.2154888	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338189|AK123275|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|580|NULL|-0.9654100|-0.2154888	chr22	 49854601	 49856658	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28932_PI429285431	0.91397214	A	0.9216007	A	0.994726240500316	0	lncRNA	30650-1_{1..1113}	n326358|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060638|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060638|0.1824150|-0.3449093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326358|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060638|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060638|0.1824150|-0.3449093	chr1	158197637	158198749	+	NA	NA	NA	NA	CD1A	NA	chr1:158223927-158225475	inter
CUST_43473_PI429285431	0.9226646	A	0.9193187	A	1.00232189257868	0	lncRNA	48274-1_{1..3000}	"gi|271397278|ref|NR_033142.1| Homo sapiens transmembrane protein 48 (TMEM48), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|271397278|ref|NR_033142.1| Homo sapiens transmembrane protein 48 (TMEM48), transcript variant 3, non-coding RNA"	Chr1	 54231133	 54234132	-	55706	NR_033142.1	NA	NA	NA	NA	NA	inter
CUST_10452_PI429285431	1.7569828	A	1.149575	A	1.52351932507485	0	lncRNA	11978-1_{1..826}	lnc-BLCAP-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BLCAP-3:1	chr20	 36319585	 36320410	-	lnc-BLCAP-3	lnc-BLCAP-3:1	XLOC_013734	linc-BLCAP-2	CTNNBL1	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00chr20:36322434-36330099"	NA	inter
LNCA_21_P0003892	9.154287	P	8.789869	P	1.28736218782642	0	lncRNA	ENST00000507759	NA	NA	NA	NA	XLOC_003917	NA	ENST00000507759	NA	NA	"BROAD Institute lincRNA (XLOC_003917), lincRNA [TCONS_00009035]"	chr4:28364106-28364047	hs|4p15.1	Agilent_HUMAN_G3V2	ENST00000507759	ENST00000507759	chr4	 28364047	 28364106	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50117_PI429285431	3.5405598	P	4.176265	P	0.643626128641538	0	lncRNA	53847-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00028808 range=chr9:69067000-69111952 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028808 range=chr9:69067000-69111952 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 69067000	 69069999	+	NA	NA	NA	NA	LOC100507370	"hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-64.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.71chr9:69065490-69089939"	NA	inter
CUST_34745_PI429285431	6.169938	P	5.076131	P	2.13436512715051	0	lncRNA	36188-1_{1..2404}	n341650|AK075059|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4121|NULL|2.6964900|-0.2608221	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341650|AK075059|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4121|NULL|2.6964900|-0.2608221	chr9	  3824126	  3826529	-	NA	NA	NA	NA	GLIS3	NA	chr9:3824128-4300035	inner
CUST_844_PI429285431	10.213337	P	10.854091	P	0.641377656059633	0	lncRNA	838-1_{1..662}	"transcript_id ""ENST00000446799.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446799.1"" | genecode_v17"	chr2	 38054752	 38055413	-	ENSG00000237803.1	ENST00000446799.1	LINC00211	LINC00211-002	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
CUST_49288_PI429285431	5.5821996	P	5.3629937	P	1.16409266069282	0	lncRNA	53107-1_{1..275}	hg19_lincRNAsTranscripts_TCONS_l2_00022750 range=chr5:1602676-1633960 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022750 range=chr5:1602676-1633960 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	  1602676	  1602950	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005418	0.8956581	A	0.9085757	A	0.991086167858803	0	lncRNA	TCONS_00013565	NA	NA	NA	NA	XLOC_006210	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006210), lincRNA [TCONS_00013565]"	chr7:112266220-112266279	hs|7q31.1	Agilent_HUMAN_G3V2	TCONS_00013565	TCONS_00013565	chr7	112266220	112266279	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7183_PI429285431	4.835016	P	5.1251974	P	0.817799224554767	0	lncRNA	7408-1_{1..309}	"transcript_id ""ENST00000410782.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410782.1"" | genecode_v17"	chr2	219365452	219365760	-	ENSG00000222714.1	ENST00000410782.1	RN7SKP38	RN7SKP38-201	USP37	NA	chr2:219355452-219375760	inner
LNCA_21_P0007163	6.2907057	P	6.4706163	P	0.882757696757987	0	lncRNA	ENST00000457746	NA	NA	NA	NA	XLOC_009567	NA	ENST00000457746	NA	NA	"BROAD Institute lincRNA (XLOC_009567), lincRNA [TCONS_00019176]"	chr11:116684711-116684652	hs|11q23.3	Agilent_HUMAN_G3V2	ENST00000457746	ENST00000457746	chr11	116684652	116684711	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009859	1.6560099	A	1.523076	A	1.09652134808696	0	lncRNA	ENST00000450473	NA	NA	NA	NA	XLOC_013571	NA	ENST00000450473	NA	NA	"BROAD Institute lincRNA (XLOC_013571), lincRNA [TCONS_00027955]"	chr20:52558948-52559007	hs|20q13.2	Agilent_HUMAN_G3V2	ENST00000450473	ENST00000450473	chr20	 52558948	 52559007	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33362_PI429285431	0.8835222	A	0.8873702	A	0.997336323547687	0	lncRNA	34942-1_{1..2160}	n340080|S60587|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2535|NULL|3.8653700|-0.2542365	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340080|S60587|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2535|NULL|3.8653700|-0.2542365	chr4	 68605045	 68607204	-	NA	NA	NA	NA	GNRHR	NA	chr4:68595045-68621804	inner
CUST_18168_PI429285431	1.9649438	A	1.080627	A	1.84589027805679	0	lncRNA	19903-1_{1..440}	lnc-FASTKD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FASTKD3-1:1	chr5	  8457562	  8458001	-	lnc-FASTKD3-1	lnc-FASTKD3-1:1	ENSG00000249159	RP11-480D4.2	NA	NA	NA	inter
LNCA_19_P00316544	0.88201314	A	4.3249435	P	0.0919548602407321	0	lncRNA	ENST00000513273	NA	NA	NA	NA	XLOC_004951	NA	ENST00000513273	THC2701312	NA	"BROAD Institute lincRNA (XLOC_004951), lincRNA [TCONS_00011014]"	chr5:106305644-106305585	hs|5q21.3	Agilent_HUMAN_G3V2	ENST00000513273	ENST00000513273	chr5	106305585	106305644	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18230_PI429285431	7.5787573	P	7.635002	P	0.96176431298858	0	lncRNA	19965-1_{1..648}	lnc-BRAT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-BRAT1-1:1	chr7	  2516359	  2517006	-	lnc-BRAT1-1	lnc-BRAT1-1:1	ENSG00000236734	GRIFIN	NA	NA	NA	inter
LNCA_21_P0007084	2.0152688	A	2.8484683	A	0.561283089837739	0	lncRNA	THC2702642	NA	NA	NA	NA	XLOC_008645	NA	NA	THC2702642	NA	"BROAD Institute lincRNA (XLOC_008645), lincRNA [TCONS_00018842]"	chr10:122714173-122714232	hs|10q26.12	Agilent_HUMAN_G3V2	THC2702642	THC2702642	chr10	122714173	122714232	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003149	0.87865686	A	1.3452537	A	0.723669643597036	0	lncRNA	TCONS_00006582	NA	NA	NA	NA	XLOC_003202	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003202), lincRNA [TCONS_00006582]"	chr3:106529529-106529470	hs|3q13.12	Agilent_HUMAN_G3V2	TCONS_00006582	TCONS_00006582	chr3	106529470	106529529	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29687_PI429285431	5.2385507	P	5.4579844	P	0.858902514635377	0	lncRNA	31449-1_{1..297}	n333344|AY255615|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085534|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085534|1.0615400|-0.1582943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333344|AY255615|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000085534|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000085534|1.0615400|-0.1582943	chr6	 47759642	 47759938	+	NA	NA	NA	NA	OPN5	NA	chr6:47749642-47773236	inter
LNCA_21_P0007772	1.3596964	A	0.87267673	A	1.40154655792362	0	lncRNA	TCONS_00020945	NA	NA	NA	NA	XLOC_010214	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010214), lincRNA [TCONS_00020945]"	chr12:119196424-119196365	hs|12q24.23	Agilent_HUMAN_G3V2	TCONS_00020945	TCONS_00020945	chr12	119196365	119196424	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16670_PI429285431	0.9148366	A	1.2651513	A	0.784412972550743	0	lncRNA	18374-1_{1..971}	lnc-GPA33-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPA33-1:2	chr1	167164926	167165896	-	lnc-GPA33-1	lnc-GPA33-1:2	XLOC_001080	linc-GPA33	POU2F1	NA	chr1:167154926-167175026	inter
CUST_25583_PI429285431	0.8969259	A	0.8878803	A	1.00628962930609	0	lncRNA	27113-1_{1..570}	lnc-EPB41L4B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EPB41L4B-1:1	chr9	112203425	112203994	-	lnc-EPB41L4B-1	lnc-EPB41L4B-1:1	ENSG00000230494.1	RP11-397F23.2	PTPN3	NA	chr9:112193425-112213532	inner
CUST_23251_PI429285431	2.607598	A	3.0563054	P	0.732699024491076	0	lncRNA	24823-1_{1..546}	lnc-MRPS7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPS7-1:2	chr17	 73269493	 73270038	+	lnc-MRPS7-1	lnc-MRPS7-1:2	ENSG00000263843.1	RP11-649A18.12	SLC25A19	"hg19_refFlat_SLC25A19:range=chr17:73269532-732828455'pad=0,hg19_refFlat_SLC25A19:range=chr17:73269532-732828455'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90chr17:73269061-73279803"	NA	inner
CUST_16047_PI429285431	2.2624664	A	3.1324432	P	0.547155649377603	0	lncRNA	17746-1_{1..792}	lnc-SPAM1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPAM1-3:3	chr7	124029526	124030317	+	lnc-SPAM1-3	lnc-SPAM1-3:3	XLOC_006229	linc-ARF5-9	NA	NA	NA	inter
CUST_8711_PI429285431	6.8893843	P	7.2760153	P	0.764913756916943	0	lncRNA	10255-1_{1..1463}	lnc-PUM2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PUM2-1:1	chr2	 20647622	 20649084	-	lnc-PUM2-1	lnc-PUM2-1:1	ENSG00000247111	ENST00000500120	RHOB	"hg19_refFlat_RHOB:range=chr2:20647227-206478175'pad=0,hg19_refFlat_RHOB:range=chr2:20647227-206478175'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.40chr2:20646835-20649201"	NA	inner
CUST_30626_PI429285431	2.0990953	A	3.6004765	P	0.353215069432267	0	lncRNA	32408-1_{1..377}	n335966|X72463|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323305|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323305|2.7536300|-0.0610377	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335966|X72463|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323305|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323305|2.7536300|-0.0610377	chr2	 89416833	 89417209	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17157_PI429285431	2.7974153	A	3.2226293	P	0.744728255221739	0	lncRNA	18866-1_{1..1708}	lnc-CD46-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD46-2:1	chr1	208137871	208139578	+	lnc-CD46-2	lnc-CD46-2:1	XLOC_000543	linc-LOC642587-6	NA	NA	NA	inter
LNCA_21_P0006205	0.8766706	A	0.8754231	A	1.00086507506953	0	lncRNA	TCONS_00016123	NA	NA	NA	NA	XLOC_007508	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007508), lincRNA [TCONS_00016123]"	chr9:110331493-110338244	hs|9q31.2	Agilent_HUMAN_G3V2	TCONS_00016123	TCONS_00016123	chr9	110331493	110338244	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007681	3.577839	P	3.115223	P	1.37803831374247	0	lncRNA	TCONS_00020679	NA	NA	NA	NA	XLOC_009984	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009984), lincRNA [TCONS_00020679]"	chr12:4105839-4071060	hs|12p13.32	Agilent_HUMAN_G3V2	TCONS_00020679	TCONS_00020679	chr12	  4071060	  4105839	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9982_PI429285431	0.9245386	A	0.97606367	A	0.964915779097366	0	lncRNA	11506-1_{1..1794}	lnc-ULBP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ULBP2-1:1	chr6	150261044	150262837	+	lnc-ULBP2-1	lnc-ULBP2-1:1	XLOC_005501	linc-ULBP2-1	ULBP2	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00chr6:150263136-150270371"	NA	inter
CUST_17848_PI429285431	1.273585	A	0.90504766	A	1.29104325734193	0	lncRNA	19583-1_{1..292}	lnc-CBLB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CBLB-1:1	chr3	105599339	105599630	-	lnc-CBLB-1	lnc-CBLB-1:1	XLOC_003197	linc-CBLB-12	NA	NA	NA	inter
LNCA_21_P0002278	4.063233	P	3.879114	P	1.13612297347374	0	lncRNA	TCONS_00003833	NA	NA	NA	NA	XLOC_001641	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001641), lincRNA [TCONS_00003833]"	chr2:121335312-121335371	hs|2q14.2	Agilent_HUMAN_G3V2	TCONS_00003833	TCONS_00003833	chr2	121335312	121335371	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28632_PI429285431	0.9236271	A	1.0706596	A	0.903106165394168	0	lncRNA	30320-1_{1..493}	n326006|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047656|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047656|-1.2043100|-0.4310249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326006|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047656|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047656|-1.2043100|-0.4310249	chr10	 39046331	 39046823	+	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.90;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.90"	NA	inter
CUST_21309_PI429285431	4.023988	P	2.7413423	A	2.43284718031064	0	lncRNA	22932-1_{1..2750}	lnc-RP11-582J16.5.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-582J16.5.1-1:1	chr8	 22471421	 22474170	-	lnc-RP11-582J16.5.1-1	lnc-RP11-582J16.5.1-1:1	ENSG00000253200.1	RP11-582J16.5	KIAA1967	"hg19_refFlat_KIAA1967:range=chr8:22463287-224771955'pad=0,hg19_refFlat_KIAA1967:range=chr8:22463287-224771955'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr8:22462145-22477984"	NA	inter
LNCA_21_P0003803	0.9213107	A	1.5464073	A	0.648376361876138	0	lncRNA	TCONS_00008668	NA	NA	NA	NA	XLOC_004182	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004182), lincRNA [TCONS_00008668]"	chr4:178222259-178141829	hs|4q34.3	Agilent_HUMAN_G3V2	TCONS_00008668	TCONS_00008668	chr4	178141829	178222259	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26546_PI429285431	0.9007498	A	0.9059524	A	0.996400326891523	0	lncRNA	28051-1_{1..593}	lnc-TMEM30B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM30B-2:1	chr14	 62011812	 62012404	-	lnc-TMEM30B-2	lnc-TMEM30B-2:1	ENSG00000258926.1	RP11-47I22.1	PRKCH	NA	chr14:62001812-62017698	inner
LNCA_21_P0005847	1.798877	A	0.9063002	A	1.85648904244621	0	lncRNA	TCONS_00015026	NA	NA	NA	NA	XLOC_007103	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007103), lincRNA [TCONS_00015026]"	chr8:66079838-66079779	hs|8q13.1	Agilent_HUMAN_G3V2	TCONS_00015026	TCONS_00015026	chr8	 66079779	 66079838	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_994_PI429285431	0.8948711	A	0.8954527	A	0.99959694684754	0	lncRNA	983-1_{1..451}	"transcript_id ""ENST00000438566.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438566.1"" | genecode_v17"	chr2	105199610	105200060	+	ENSG00000236109.1	ENST00000438566.1	AC013402.3	AC013402.3-001	NA	NA	NA	inter
CUST_16187_PI429285431	0.89824146	A	0.9010465	A	0.998057583370289	0	lncRNA	17892-1_{1..611}	lnc-TRAF5-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRAF5-6:1	chr1	211859812	211860422	+	lnc-TRAF5-6	lnc-TRAF5-6:1	XLOC_000550	linc-DTL-2	NA	NA	NA	inter
LNCA_21_P0002603	0.9027813	A	1.2639401	A	0.778538991178637	0	lncRNA	TCONS_00004842	NA	NA	NA	NA	XLOC_001564	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001564), lincRNA [TCONS_00004842]"	chr2:89113228-89113287	hs|2p11.2	Agilent_HUMAN_G3V2	TCONS_00004842	TCONS_00004842	chr2	 89113228	 89113287	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7794_PI429285431	4.2387033	P	4.414359	P	0.885365032242348	0	lncRNA	9419-1_{1..273}	lnc-C8orf56-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C8orf56-1:6	chr8	104298066	104298338	-	lnc-C8orf56-1	lnc-C8orf56-1:6	ENSG00000247081	RP11-318M2.2	NA	NA	NA	inter
LNCA_21_P0002842	0.87954664	A	2.121042	A	0.422934055834097	0	lncRNA	ENST00000430018	XR_110043	XR_110043	NA	NA	XLOC_003065	NA	ENST00000430018	THC2651526	NA	"PREDICTED: Homo sapiens hypothetical LOC100505877, transcript variant 1 (LOC100505877), miscRNA [XR_110043]"	chr3:23236654-23236595	hs|3p24.3	Agilent_HUMAN_G3V2	ENST00000430018	ENST00000430018	chr3	 23236595	 23236654	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007271	0.8788657	A	0.8765667	A	1.00159481573623	0	lncRNA	TCONS_00019457	NA	NA	NA	NA	XLOC_009266	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009266), lincRNA [TCONS_00019457]"	chr11:104229635-104229694	hs|11q22.3	Agilent_HUMAN_G3V2	TCONS_00019457	TCONS_00019457	chr11	104229635	104229694	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4197_PI429285431	4.8061905	P	5.311409	P	0.704553662964477	0	lncRNA	4156-1_{1..832}	"transcript_id ""ENST00000538905.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000538905.1"" | genecode_v17"	chr12	 24520869	 24521700	-	ENSG00000255864.1	ENST00000538905.1	RP11-444D3.1	RP11-444D3.1-004	SOX5	NA	chr12:24510869-24715380	inner
CUST_19578_PI429285431	2.864987	A	2.932742	A	0.954121566725392	0	lncRNA	21234-1_{1..461}	lnc-ZFP36L1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZFP36L1-2:1	chr14	 69152088	 69152548	-	lnc-ZFP36L1-2	lnc-ZFP36L1-2:1	ENSG00000258623.1	CTD-2325P2.3	NA	NA	NA	inter
LNCA_21_P0014736	0.8788695	A	0.8733507	A	1.0038326666141	0	lncRNA	XR_108868	XR_108868	XR_108868	NA	Hs.435500	LOC100506538	uncharacterized LOC100506538	ENST00000521840	THC2533138	NA	"PREDICTED: Homo sapiens hypothetical LOC100506538 (LOC100506538), miscRNA [XR_108868]"	chr8:96000846-96000905	hs|8q22.1	Agilent_HUMAN_G3V2	XR_108868	XR_108868	chr8	 96000846	 96000905	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10460_PI429285431	0.88453805	A	0.8773835	A	1.00497147312776	0	lncRNA	11986-1_{1..623}	lnc-C2CD4A-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2CD4A-6:1	chr15	 61703292	 61703914	+	lnc-C2CD4A-6	lnc-C2CD4A-6:1	XLOC_011275	linc-C2CD4A-4	NA	NA	NA	inter
LNCA_21_P0010433	0.8790224	A	0.873173	A	1.00406272570316	0	lncRNA	THC2624567	NA	NA	NA	NA	XLOC_014323	NA	NA	THC2624567	NA	"BROAD Institute lincRNA (XLOC_014323), lincRNA [TCONS_00029662]"	chr22:025812758-025812699	hs|22q11.23	Agilent_HUMAN_G3V2	THC2624567	THC2624567	chr22	 25812699	 25812758	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11232_PI429285431	6.6209064	P	6.5369678	P	1.05990767357561	0	lncRNA	12790-1_{1..815}	lnc-NCOA3-9:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCOA3-9:3	chr20	 46691399	 46692213	+	lnc-NCOA3-9	lnc-NCOA3-9:3	XLOC_013547	linc-ARFGEF2-8	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60"	NA	inter
CUST_8102_PI429285431	4.1205635	P	3.900403	P	1.16486317043059	0	lncRNA	9707-1_{1..332}	lnc-PLAC1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PLAC1-1:5	chrX	133678744	133679075	-	lnc-PLAC1-1	lnc-PLAC1-1:5	ENSG00000223749	AC004383.4	NA	NA	NA	inter
CUST_47352_PI429285431	1.5286062	A	1.4064293	A	1.08837588767674	0	lncRNA	51403-1_{1..826}	"gi|108773780|ref|NR_003088.1| Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), member 13, pseudogene (ABCC13), transcript variant D, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|108773780|ref|NR_003088.1| Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), member 13, pseudogene (ABCC13), transcript variant D, non-coding RNA"	Chr21	 15646120	 15646945	+	150000	NR_003088.1	NA	NA	NA	NA	NA	inter
CUST_25377_PI429285431	2.0175128	A	2.4095907	A	0.762031267292658	0	lncRNA	26908-1_{1..485}	lnc-CRAMP1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CRAMP1L-1:1	chr16	  1659972	  1660456	+	lnc-CRAMP1L-1	lnc-CRAMP1L-1:1	ENSG00000260989.1	LA16c-395F10.2	IFT140	NA	chr16:1649972-1662109	inner
LNCA_21_P0009774	4.5669785	P	5.061281	P	0.709904812938169	0	lncRNA	TCONS_00027396	NA	NA	NA	NA	XLOC_013387	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013387), lincRNA [TCONS_00027396]"	chr19:51774727-51774668	hs|19q13.41	Agilent_HUMAN_G3V2	TCONS_00027396	TCONS_00027396	chr19	 51774668	 51774727	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005382	1.6493471	A	3.0342064	P	0.382926842702448	0	lncRNA	TCONS_00013447	NA	NA	NA	NA	XLOC_006100	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006100), lincRNA [TCONS_00013447]"	chr7:52569636-52569695	hs|7p12.1	Agilent_HUMAN_G3V2	TCONS_00013447	TCONS_00013447	chr7	 52569636	 52569695	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42603_PI429285431	3.878739	P	3.883382	P	0.996786890760324	0	lncRNA	45462-1_{1..127}	ENST00000459171 ncrna:snoRNA chromosome:GRCh37:16:12391054:12391180:-1 gene:ENSG00000238685 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459171 ncrna:snoRNA chromosome:GRCh37:16:12391054:12391180:-1 gene:ENSG00000238685 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 12391054	 12391180	-	ENSG00000238685	ENST00000459171	NA	NA	SNX29	NA	chr16:12381054-12401180	inner
LNCA_21_P0003589	0.8790461	A	0.8758859	A	1.00219288458217	0	lncRNA	TCONS_00008021	NA	NA	NA	NA	XLOC_003485	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003485), lincRNA [TCONS_00008021]"	chr4:27747066-27751763	hs|4p15.1	Agilent_HUMAN_G3V2	TCONS_00008021	TCONS_00008021	chr4	 27747066	 27751763	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30823_PI429285431	8.103134	P	7.915259	P	1.1390846787797	0	lncRNA	32610-1_{1..228}	n336752|Z77838|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328129|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328129|0.2271150|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336752|Z77838|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328129|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328129|0.2271150|-1.0000000	chr7	142032441	142032668	+	NA	NA	NA	NA	PRSS1	NA	chr7:142457319-142460927	inner
CUST_31154_PI429285431	1.3824599	A	1.2577775	A	1.09026769085043	0	lncRNA	32949-1_{1..697}	n337489|EF212156|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395350|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395350|0.9692470|-0.1594907	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337489|EF212156|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395350|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395350|0.9692470|-0.1594907	chr2	179537188	179537884	-	NA	NA	NA	NA	TTN	NA	chr2:179527188-179554381	inter
CUST_4983_PI429285431	0.90229154	A	1.0770866	A	0.885893354489789	0	lncRNA	4927-1_{1..479}	"transcript_id ""ENST00000421617.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421617.1"" | genecode_v17"	chr14	 99311233	 99311711	+	ENSG00000237342.1	ENST00000421617.1	AL132796.1	AL132796.1-001	NA	NA	NA	inter
LNCA_21_P0014381	4.5697002	P	5.315344	P	0.596401668979755	0	lncRNA	XR_109528	XR_109528	XR_109528	NA	NA	LOC100507591	uncharacterized LOC100507591	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507591 (LOC100507591), miscRNA [XR_109528]"	chr19:39306130-39306189	hs|19q13.2	Agilent_HUMAN_G3V2	XR_109528	XR_109528	chr19	 39306130	 39306189	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50620_PI429285431	4.0953946	P	4.588573	P	0.710458162708875	0	lncRNA	54304-2_{3001..3979}	hg19_lincRNAsTranscripts_TCONS_l2_00003384 range=chr10:6162514-6183674 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003384 range=chr10:6162514-6183674 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	  6165514	  6166492	-	NA	NA	NA	NA	PFKFB3	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30chr10:6186843-6193674"	NA	inter
CUST_30623_PI429285431	0.9079428	A	1.985213	A	0.473924713665625	0	lncRNA	32405-1_{1..379}	n335962|X72451|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323293|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323293|2.3912500|-0.1347265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335962|X72451|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323293|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323293|2.3912500|-0.1347265	chr2	 89890581	 89890959	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001790	7.4353704	P	7.461677	P	0.981930894189106	0	lncRNA	ENST00000445865	NA	AK097952	NA	Hs.580313	XLOC_002129	NA	ENST00000445865	THC2618980	NA	"BROAD Institute lincRNA (XLOC_002129), lincRNA [TCONS_00002754]"	chr2:65073326-65073267	hs|2p14	Agilent_HUMAN_G3V2	ENST00000445865	ENST00000445865	chr2	 65073267	 65073326	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006442	1.6496171	A	0.9297936	A	1.64698052982507	0	lncRNA	ENST00000391359	NA	NA	NA	NA	XLOC_008117	NA	ENST00000391359	NA	NA	"BROAD Institute lincRNA (XLOC_008117), lincRNA [TCONS_00017042]"	chrX:13998244-13998185	hs|Xp22.2	Agilent_HUMAN_G3V2	ENST00000391359	ENST00000391359	chrX	 13998185	 13998244	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31299_PI429285431	1.6103941	A	1.9985006	A	0.764131849953815	0	lncRNA	33084-1_{1..2281}	n337762|AK093484|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|144|NULL|-0.9976140|-0.2685549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337762|AK093484|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|144|NULL|-0.9976140|-0.2685549	chr15	 51551462	 51553742	-	NA	NA	NA	NA	CYP19A1	NA	chr15:51541462-51563739	inner
CUST_37121_PI429285431	3.411749	P	4.1528044	P	0.598301506184709	0	lncRNA	38244-1_{1..565}	n345562|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1111|NULL|-1.3173500|-0.3906834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345562|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1111|NULL|-1.3173500|-0.3906834	chr2	192295237	192295801	-	NA	NA	NA	NA	MYO1B	NA	chr2:192285237-192290115	inter
CUST_41136_PI429285431	1.7155188	A	1.9952315	A	0.823755044490432	0	lncRNA	41922-1_{1..79}	ENST00000385256 ncrna:miRNA chromosome:GRCh37:9:126164804:126164882:-1 gene:ENSG00000207991 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385256 ncrna:miRNA chromosome:GRCh37:9:126164804:126164882:-1 gene:ENSG00000207991 gene_biotype:miRNA transcript_biotype:miRNA	chr9	126164804	126164882	-	ENSG00000207991	ENST00000385256	NA	NA	DENND1A	NA	chr9:126154804-126174882	inner
LNCA_21_P0001229	1.2306957	A	0.91458774	A	1.24496739550774	0	lncRNA	ENST00000453760	NA	NA	NA	NA	XLOC_001225	NA	ENST00000453760	NA	NA	"BROAD Institute lincRNA (XLOC_001225), lincRNA [TCONS_00000742]"	chr1:224398040-224397981	hs|1q42.11	Agilent_HUMAN_G3V2	ENST00000453760	ENST00000453760	chr1	224397981	224398040	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010634	1.146934	A	3.3409371	P	0.218544185503902	0	lncRNA	TCONS_l2_00001391	NA	NA	NA	NA	XLOC_l2_001011	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001011), lincRNA [TCONS_l2_00001391]"	chr1:95144709-95144650	hs|1p21.3	Agilent_HUMAN_G3V2	TCONS_l2_00001391	TCONS_l2_00001391	chr1	 95144650	 95144709	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20656_PI429285431	1.1304861	A	1.1145358	A	1.01111724785376	0	lncRNA	22295-1_{1..561}	lnc-RP11-231C14.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-231C14.2.1-1:1	chr16	 29275651	 29276211	-	lnc-RP11-231C14.2.1-1	lnc-RP11-231C14.2.1-1:1	ENSG00000260953.1	RP11-426C22.6	NA	NA	NA	inter
CUST_38913_PI429285431	0.89759284	A	0.8951756	A	1.00167690753031	0	lncRNA	39902-1_{1..2232}	n384988|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003prn.1||1.0233600|-0.3175931	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384988|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003prn.1||1.0233600|-0.3175931	chr6	107165326	107167557	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3270136	0.89292085	A	0.9049002	A	0.991730925766676	0	lncRNA	XR_109613	XR_109613	XR_109613	100130157	Hs.729907	LOC100130157	uncharacterized LOC100130157	NA	THC2484797	NA	"PREDICTED: Homo sapiens hypothetical LOC100130157 (LOC100130157), miscRNA [XR_109613]"	chr20:44075466-44075525	hs|20q13.12	Agilent_HUMAN_G3V2	XR_109613	XR_109613	chr20	 44075466	 44075525	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014420	1.2957572	A	0.90212953	A	1.31369254629433	0	lncRNA	XR_109701	XR_109701	XR_109701	NA	NA	LOC100506503	uncharacterized LOC100506503	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506503 (LOC100506503), miscRNA [XR_109701]"	chr22:19437597-19437656	hs|22q11.21	Agilent_HUMAN_G3V2	XR_109701	XR_109701	chr22	 19437597	 19437656	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38171_PI429285431	1.0130904	A	2.1140373	A	0.46621040229645	0	lncRNA	39242-1_{1..1182}	n381425|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ixf.2||-1.1654400|-0.2479311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381425|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ixf.2||-1.1654400|-0.2479311	chr10	 34398808	 34399989	+	NA	NA	NA	NA	PARD3	NA	chr10:34398488-34409990	inner
CUST_30252_PI429285431	2.7115219	A	1.0086704	A	3.25543763316894	0	lncRNA	32027-1_{1..501}	n335128|AY187239|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250924|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250924|2.4725400|-0.1578753	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335128|AY187239|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250924|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250924|2.4725400|-0.1578753	chr16	 50746105	 50746605	+	NA	NA	NA	NA	NOD2	NA	chr16:50736105-50766987	inner
CUST_1027_PI429285431	1.0316079	A	0.8983544	A	1.0967642871927	0	lncRNA	1017-1_{1..2044}	"transcript_id ""ENST00000371162.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000371162.4"" | genecode_v17"	chr2	111994581	111996624	-	ENSG00000233488.2	ENST00000371162.4	RP11-181E10.1	RP11-181E10.1-001	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-25.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30"	NA	inter
LNCA_21_P0009268	0.8794056	A	3.0417213	P	0.223397399954467	0	lncRNA	TCONS_00025474	NA	NA	NA	NA	XLOC_012294	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012294), lincRNA [TCONS_00025474]"	chr17:67708680-67841626	hs|17q24.3	Agilent_HUMAN_G3V2	TCONS_00025474	TCONS_00025474	chr17	 67708680	 67841626	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010897	4.5412564	P	4.936856	P	0.760173374504116	0	lncRNA	TCONS_l2_00003715	NA	NA	NA	NA	XLOC_l2_002067	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002067), lincRNA [TCONS_l2_00003715]"	chr10:95505468-95505409	hs|10q23.33	Agilent_HUMAN_G3V2	TCONS_l2_00003715	TCONS_l2_00003715	chr10	 95505409	 95505468	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31318_PI429285431	0.9033997	A	0.9101448	A	0.995335565374336	0	lncRNA	33101-1_{1..1726}	n337784|CR605870|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|166|NULL|-0.7208580|-0.2345902	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337784|CR605870|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|166|NULL|-0.7208580|-0.2345902	chr15	 57846152	 57847877	+	NA	NA	NA	NA	CGNL1	NA	chr15:57836152-57842921	inter
CUST_44823_PI429285431	3.4635954	P	3.6907527	P	0.854316587921282	0	lncRNA	49355-2_{3001..3997}	"gi|333470699|ref|NR_038245.1| Homo sapiens uncharacterized LOC100507557 (LOC100507557), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|333470699|ref|NR_038245.1| Homo sapiens uncharacterized LOC100507557 (LOC100507557), transcript variant 2, non-coding RNA"	Chr6	146139012	146140008	+	100507557	NR_038245.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0010478	5.2824183	P	5.8361034	P	0.681277704971822	0	lncRNA	TCONS_00029901	NA	NA	NA	NA	XLOC_014361	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014361), lincRNA [TCONS_00029901]"	chr22:36517651-36517592	hs|22q12.3	Agilent_HUMAN_G3V2	TCONS_00029901	TCONS_00029901	chr22	 36517592	 36517651	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00319752	0.87875056	A	0.87459564	A	1.00288412218423	0	lncRNA	ENST00000512458	NA	NA	NA	NA	XLOC_004429	NA	ENST00000512458	NA	NA	"BROAD Institute lincRNA (XLOC_004429), lincRNA [TCONS_00010713]"	chr5:73617619-73617678	hs|5q13.3	Agilent_HUMAN_G3V2	ENST00000512458	ENST00000512458	chr5	 73617619	 73617678	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2075_PI429285431	1.2801994	A	1.1598552	A	1.08699416802984	0	lncRNA	2066-1_{1..496}	"transcript_id ""ENST00000510229.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510229.1"" | genecode_v17"	chr5	  8839844	  8840339	+	ENSG00000250198.1	ENST00000510229.1	RP11-143A12.3	RP11-143A12.3-002	NA	NA	NA	inter
CUST_3634_PI429285431	1.1568083	A	0.89775467	A	1.19669344766777	0	lncRNA	3604-1_{1..319}	"transcript_id ""ENST00000446557.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000446557.1"" | genecode_v17"	chr10	 26953135	 26953453	-	ENSG00000227932.1	ENST00000446557.1	RP13-16H11.2	RP13-16H11.2-001	NA	NA	NA	inter
CUST_33469_PI429285431	2.1400127	A	1.6900836	A	1.36597312553703	0	lncRNA	35042-1_{1..2036}	n340204|AK000774|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2665|NULL|-0.7992850|-0.3891109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340204|AK000774|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2665|NULL|-0.7992850|-0.3891109	chr4	119957648	119959683	+	NA	NA	NA	NA	SYNPO2	NA	chr4:119947648-119969674	inner
CUST_14685_PI429285431	0.9166946	A	3.4563344	A	0.171985661845325	0	lncRNA	16354-1_{1..730}	lnc-MKKS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MKKS-2:1	chr20	 10298877	 10299606	-	lnc-MKKS-2	lnc-MKKS-2:1	XLOC_013649	linc-PAK7	NA	NA	NA	inter
LNCA_21_P0007784	1.8975168	A	2.272047	A	0.771356556780273	0	lncRNA	THC2665362	NA	NA	NA	NA	XLOC_010243	NA	NA	THC2665362	NA	"BROAD Institute lincRNA (XLOC_010243), lincRNA [TCONS_00020974]"	chr12:127137576-127137517	hs|12q24.32	Agilent_HUMAN_G3V2	THC2665362	THC2665362	chr12	127137517	127137576	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013601	0.88086885	A	0.87399817	A	1.00477375068515	0	lncRNA	AK024464	NA	AK024464	NA	NA	XLOC_l2_015033	NA	NA	THC2611212	NA	"BROAD Institute lincRNA (XLOC_l2_015033), lincRNA [TCONS_l2_00029054]"	chr9:132049335-132049394	hs|9q34.11	Agilent_HUMAN_G3V2	AK024464	AK024464	chr9	132049335	132049394	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30058_PI429285431	5.1471143	P	5.4575453	P	0.806400813864956	0	lncRNA	31827-1_{1..316}	n334570|U63321|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220766|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220766|-1.2490300|-0.0835818	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334570|U63321|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220766|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220766|-1.2490300|-0.0835818	chr6	 32629985	 32630300	+	NA	NA	NA	NA	HLA-DQB1	"hg19_refFlat_HLA-DPB1:range=chr6_ssto_hap7:4524323-45345195'pad=0,hg19_refFlat_HLA-DPB1:range=chr6_ssto_hap7:4524323-45345195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_HLA-DQB1:range=chr6:32628013-326343845'pad=0,hg19_refFlat_HLA-DQB1:range=chr6:32628013-326343845'pad=0 3'pad=0 strand=- repeatMasking=none,-102.00;hg19_refFlat_HLA-DRB1:range=chr6_ssto_hap7:3934617-39930695'pad=0,hg19_refFlat_HLA-DRB1:range=chr6_ssto_hap7:3934617-39930695'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_HLA-DQB1:range=chr6_qbl_hap6:3859738-38664865'pad=0,hg19_refFlat_HLA-DQB1:range=chr6_qbl_hap6:3859738-38664865'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_HLA-DPB1:range=chr6:33043819-330540155'pad=0,hg19_refFlat_HLA-DPB1:range=chr6:33043819-330540155'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_HLA-DQB1:range=chr6_cox_hap2:4073284-40800325'pad=0,hg19_refFlat_HLA-DQB1:range=chr6_cox_hap2:4073284-40800325'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_HLA-DPB1:range=chr6_mcf_hap5:4380674-43908605'pad=0,hg19_refFlat_HLA-DPB1:range=chr6_mcf_hap5:4380674-43908605'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_HLA-DPB1:range=chr6_dbb_hap3:4325158-43353465'pad=0,hg19_refFlat_HLA-DPB1:range=chr6_dbb_hap3:4325158-43353465'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_HLA-DPB1:range=chr6_apd_hap1:4330620-43408065'pad=0,hg19_refFlat_HLA-DPB1:range=chr6_apd_hap1:4330620-43408065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_HLA-DPB1:range=chr6_mann_hap4:4501359-45115615'pad=0,hg19_refFlat_HLA-DPB1:range=chr6_mann_hap4:4501359-45115615'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30chr6:32627657-32634466"	NA	inner
CUST_29716_PI429285431	9.521279	P	9.28046	P	1.18166328658406	0	lncRNA	31478-1_{1..974}	n333385|BC005347|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086516|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086516|2.7821800|-0.3177110	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333385|BC005347|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000086516|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000086516|2.7821800|-0.3177110	chr6	111303255	111304228	+	NA	NA	NA	NA	RPF2	NA	chr6:111303291-111346794	inner
CUST_39545_PI429285431	1.7793207	A	0.8938755	A	1.84733460087721	0	lncRNA	40490-1_{1..2551}	n387467|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011evj.1||-0.8965220|-0.2830917	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387467|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011evj.1||-0.8965220|-0.2830917	chr6	  1219323	  1221873	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48639_PI429285431	7.482818	P	8.617639	P	0.455391415227259	0	lncRNA	52486-1_{1..365}	hg19_lincRNAsTranscripts_TCONS_l2_00013783 range=chr2:91750983-91754741 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013783 range=chr2:91750983-91754741 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 91750983	 91751347	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16959_PI429285431	1.0915357	A	0.877937	A	1.15957706172808	0	lncRNA	18671-1_{1..889}	lnc-RP11-210M15.2.1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-210M15.2.1-3:4	chr15	 80633898	 80634786	-	lnc-RP11-210M15.2.1-3	lnc-RP11-210M15.2.1-3:4	XLOC_011544	linc-BCL2A1-2	NA	NA	NA	inter
CUST_39050_PI429285431	1.7475394	A	1.7899652	A	0.971020864137869	0	lncRNA	40028-1_{1..2421}	n385482|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zmh.1||-1.0217200|-0.2212423	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385482|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zmh.1||-1.0217200|-0.2212423	chr9	 16216805	 16219225	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1527_PI429285431	0.88659394	A	1.1871665	A	0.81193010304639	0	lncRNA	1514-1_{1..584}	"transcript_id ""ENST00000462928.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000462928.1"" | genecode_v17"	chr3	162917366	162917949	-	ENSG00000241369.1	ENST00000462928.1	CT64	CT64-003	NA	NA	NA	inter
LNCA_21_P0005425	0.8744122	A	1.3523892	A	0.717983701593181	0	lncRNA	TCONS_00013582	NA	NA	NA	NA	XLOC_006235	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006235), lincRNA [TCONS_00013582]"	chr7:125870412-125873594	hs|7q31.33	Agilent_HUMAN_G3V2	TCONS_00013582	TCONS_00013582	chr7	125870412	125873594	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14134_PI429285431	12.760643	P	12.423188	P	1.26352569223198	0	lncRNA	15784-1_{1..2939}	lnc-KIAA0196-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA0196-2:2	chr8	125949950	125952888	-	lnc-KIAA0196-2	lnc-KIAA0196-2:2	XLOC_007207	linc-MTSS1	NA	NA	NA	inter
CUST_12362_PI429285431	1.4173448	A	1.4191697	A	0.998735875389712	0	lncRNA	13974-1_{1..1561}	lnc-FCHSD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FCHSD2-1:1	chr11	 72873585	 72875145	-	lnc-FCHSD2-1	lnc-FCHSD2-1:1	XLOC_009499	linc-FCHSD2-3	NA	NA	NA	inter
CUST_51710_PI429285431	11.36061	P	11.721304	P	0.77878985723902	0	lncRNA	55267-1_{1..1523}	hg19_lincRNAsTranscripts_TCONS_l2_00011964 range=chr18:11619398-11639706 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011964 range=chr18:11619398-11639706 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 11619398	 11620920	-	NA	NA	NA	NA	AMAC1L1	NA	chr18:11609595-11610611	inter
CUST_15639_PI429285431	3.732379	P	3.9304328	P	0.871725731129203	0	lncRNA	17329-1_{1..2192}	lnc-AC114947.1.1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC114947.1.1-2:4	chr5	 43097974	 43100165	+	lnc-AC114947.1.1-2	lnc-AC114947.1.1-2:4	XLOC_004366	linc-ZNF131-1	NA	NA	NA	inter
LNCA_21_P0008213	0.9177002	A	0.95686007	A	0.973221522158108	0	lncRNA	TCONS_00022111	NA	NA	NA	NA	XLOC_010719	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010719), lincRNA [TCONS_00022111]"	chr13:110688082-110688023	hs|13q34	Agilent_HUMAN_G3V2	TCONS_00022111	TCONS_00022111	chr13	110688023	110688082	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47003_PI429285431	0.9191833	A	0.95177156	A	0.977664748617987	0	lncRNA	51102-1_{1..3000}	"gi|402534576|ref|NR_073130.1| Homo sapiens cadherin 19, type 2 (CDH19), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402534576|ref|NR_073130.1| Homo sapiens cadherin 19, type 2 (CDH19), transcript variant 3, non-coding RNA"	Chr18	 64168424	 64171423	-	28513	NR_073130.1	NA	NA	NA	NA	NA	inter
CUST_20177_PI429285431	1.9342538	A	1.523827	A	1.32907894430021	0	lncRNA	21821-1_{1..432}	lnc-TMEM18-13:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM18-13:1	chr2	  1063813	  1064244	-	lnc-TMEM18-13	lnc-TMEM18-13:1	ENSG00000235403.1	AC114808.3	SNTG2	NA	chr2:1053813-1074027	inner
CUST_23075_PI429285431	2.644188	A	2.3388965	A	1.23566828165122	0	lncRNA	24646-1_{1..317}	lnc-POU5F1B-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POU5F1B-3:4	chr8	127646790	127647106	+	lnc-POU5F1B-3	lnc-POU5F1B-3:4	ENSG00000254286.1	RP11-89K10.1	NA	NA	NA	inter
CUST_42851_PI429285431	9.190609	P	9.495671	P	0.809407431414268	0	lncRNA	45895-1_{1..110}	ENST00000363915 ncrna:snoRNA chromosome:GRCh37:14:21865451:21865560:-1 gene:ENSG00000200785 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363915 ncrna:snoRNA chromosome:GRCh37:14:21865451:21865560:-1 gene:ENSG00000200785 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 21865451	 21865560	-	ENSG00000200785	ENST00000363915	NA	NA	CHD8	NA	chr14:21855451-21875560	inner
CUST_24089_PI429285431	0.89630145	A	0.8929699	A	1.00231192287114	0	lncRNA	25640-1_{1..571}	lnc-MACC1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MACC1-1:2	chr7	 20179940	 20180510	-	lnc-MACC1-1	lnc-MACC1-1:2	ENSG00000243004.1	AC005062.2	MACC1	NA	chr7:20174278-20190049	inner
CUST_8722_PI429285431	2.1379123	A	2.4725575	A	0.7929791288948	0	lncRNA	10265-1_{1..2341}	lnc-COL6A3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-COL6A3-5:1	chr2	237992799	237995139	-	lnc-COL6A3-5	lnc-COL6A3-5:1	ENSG00000227252	AC105760.2	COPS8	NA	chr2:237994084-238004460	inner
CUST_2683_PI429285431	8.007409	P	8.117792	P	0.926342108230425	0	lncRNA	2669-1_{1..385}	"transcript_id ""ENST00000419064.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419064.1"" | genecode_v17"	chr6	159586941	159587325	+	ENSG00000233682.1	ENST00000419064.1	RP11-13P5.2	RP11-13P5.2-001	FNDC1	NA	chr6:159590429-159598385	inter
CUST_39762_PI429285431	2.0660944	A	2.674336	A	0.655995762187287	0	lncRNA	40679-7_{18001..19250}	n405913|NR_003149|lncRNA|Homosapiens||RefGeneNoncode|NR_003149||40.8024000|-0.2615927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n405913|NR_003149|lncRNA|Homosapiens||RefGeneNoncode|NR_003149||40.8024000|-0.2615927	chr5	 89872616	 89873865	+	NA	NA	NA	NA	GPR98	NA	chr5:89854617-90460033	inner
LNCA_21_P0002999	0.8838039	A	0.8895254	A	0.996042011970771	0	lncRNA	TCONS_00006129	NA	NA	NA	NA	XLOC_002731	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002731), lincRNA [TCONS_00006129]"	chr3:97693889-97693948	hs|3q11.2	Agilent_HUMAN_G3V2	TCONS_00006129	TCONS_00006129	chr3	 97693889	 97693948	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21382_PI429285431	1.0243404	A	0.9121045	A	1.08090212959408	0	lncRNA	23004-1_{1..754}	lnc-POC5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POC5-1:1	chr5	 74894952	 74895705	-	lnc-POC5-1	lnc-POC5-1:1	ENSG00000248881.1	CTC-366B18.2	POLK	NA	chr5:74884952-74895646	inner
CUST_50749_PI429285431	0.89186835	A	0.88382435	A	1.00559124893131	0	lncRNA	54415-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00003843 range=chr10:134309449-134331794 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003843 range=chr10:134309449-134331794 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	134315449	134318448	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
CUST_38631_PI429285431	2.8562255	A	3.4988904	P	0.640528691305605	0	lncRNA	39634-1_{1..1310}	n383821|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vsa.2||-0.8814380|-0.1405448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383821|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vsa.2||-0.8814380|-0.1405448	chr2	232570400	232571709	-	NA	NA	NA	NA	PTMA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-23.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20chr2:232573235-232578251"	NA	inter
CUST_9497_PI429285431	0.9150155	A	1.2592447	A	0.787728730169329	0	lncRNA	11005-1_{1..695}	lnc-UNC5CL-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UNC5CL-1:2	chr6	 40965877	 40966571	-	lnc-UNC5CL-1	lnc-UNC5CL-1:2	XLOC_005715	linc-LRFN2-1	NA	NA	NA	inter
CUST_5589_PI429285431	5.7726736	P	5.757585	P	1.01051350308549	0	lncRNA	5518-1_{1..472}	"transcript_id ""ENST00000568659.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568659.1"" | genecode_v17"	chr16	 65635004	 65635475	-	ENSG00000260004.1	ENST00000568659.1	RP11-351A20.2	RP11-351A20.2-001	NA	NA	NA	inter
CUST_44574_PI429285431	4.3802304	P	5.3495483	P	0.510747484987957	0	lncRNA	49156-1_{1..617}	"gi|338221684|ref|NR_039995.1| Homo sapiens TMEM161B antisense RNA 1 (TMEM161B-AS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|338221684|ref|NR_039995.1| Homo sapiens TMEM161B antisense RNA 1 (TMEM161B-AS1), transcript variant 3, non-coding RNA"	Chr5	 87564699	 87565315	+	100505894	NR_039995.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001253	3.6144397	P	4.293613	P	0.624523039110459	0	lncRNA	TCONS_00000803	NA	NA	NA	NA	XLOC_000019	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000019), lincRNA [TCONS_00000803]"	chr1:1533612-1533671	hs|1p36.33	Agilent_HUMAN_G3V2	TCONS_00000803	TCONS_00000803	chr1	  1533612	  1533671	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24025_PI429285431	1.4884543	A	0.8861815	A	1.5181062853894	0	lncRNA	25577-2_{3001..4713}	lnc-CERS5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CERS5-1:1	chr12	 50588116	 50589828	-	lnc-CERS5-1	lnc-CERS5-1:1	ENSG00000257298.1	RP3-405J10.3	LIMA1	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr12:50575116-50595146"	NA	inner
LNCA_21_P0008740	2.3481395	A	2.646	A	0.813457850848647	0	lncRNA	TCONS_00023676	NA	NA	NA	NA	XLOC_011474	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011474), lincRNA [TCONS_00023676]"	chr15:48959075-48959016	hs|15q21.1	Agilent_HUMAN_G3V2	TCONS_00023676	TCONS_00023676	chr15	 48959016	 48959075	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8719_PI429285431	0.89960563	A	1.0284694	A	0.914551444174706	0	lncRNA	10262-1_{1..1913}	lnc-FAM200A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM200A-1:1	chr7	 99172899	 99174811	-	lnc-FAM200A-1	lnc-FAM200A-1:1	ENSG00000246952	ENST00000500980	ZNF655	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-42.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-40.42;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10chr7:99162899-99174076"	NA	inner
CUST_336_PI429285431	1.7445056	A	2.6440477	A	0.536056844474785	0	lncRNA	329-1_{1..771}	"transcript_id ""ENST00000444327.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444327.1"" | genecode_v17"	chr1	101815605	101816375	+	ENSG00000231671.1	ENST00000444327.1	RP11-157N3.1	RP11-157N3.1-001	NA	NA	NA	inter
LNCA_21_P0010152	1.9742564	A	1.7169062	A	1.19528131240124	0	lncRNA	ENST00000426418	NA	NA	NA	NA	XLOC_013896	NA	ENST00000426418	THC2679697	NA	"BROAD Institute lincRNA (XLOC_013896), lincRNA [TCONS_00028825]"	chr21:29025751-29025810	hs|21q21.3	Agilent_HUMAN_G3V2	ENST00000426418	ENST00000426418	chr21	 29025751	 29025810	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_266_PI429201921	3.7917356	P	3.726786	P	1.04604839585319	0	lncRNA	194-1_{1..3000}	TC01005980.hg.1	TCONS_l2_00002726-XLOC_l2_001220 // Broad TUCP // linc-ZNF648-1 chr1:-:182031811-182038388 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:182031811-182038388	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00002726-XLOC_l2_001220	linc-ZNF648-1	chr1	182031811	182038388	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32568_PI429285431	2.4930673	A	2.486747	A	1.00439050828808	0	lncRNA	34232-1_{1..2108}	n339185|AK027477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1616|NULL|-0.9646570|-0.3000001	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339185|AK027477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1616|NULL|-0.9646570|-0.3000001	chr2	237949128	237951235	-	NA	NA	NA	NA	COPS8	NA	chr2:237994084-238003489	inter
CUST_25860_PI429285431	0.8952741	A	0.8828339	A	1.00866017375654	0	lncRNA	27381-2_{3001..4374}	lnc-CELF6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CELF6-1:1	chr15	 72671061	 72672434	-	lnc-CELF6-1	lnc-CELF6-1:1	ENSG00000260729.1	RP11-106M3.2	HEXA	NA	chr15:72658061-72668520	inner
CUST_8199_PI429285431	1.4975879	A	1.1566792	A	1.26655409814983	0	lncRNA	9796-1_{1..1619}	lnc-UBFD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBFD1-1:1	chr16	 23489586	 23491204	+	lnc-UBFD1-1	lnc-UBFD1-1:1	ENSG00000245868	ENST00000498959	GGA2	"hg19_refFlat_GGA2:range=chr16:23478911-235217325'pad=0,hg19_refFlat_GGA2:range=chr16:23478911-235217325'pad=0 3'pad=0 strand=- repeatMasking=none,-95.60chr16:23479586-23500537"	NA	inner
CUST_921_PI429285431	1.1865603	A	2.8003092	A	0.326748178802225	0	lncRNA	911-1_{1..1074}	"transcript_id ""ENST00000452716.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452716.1"" | genecode_v17"	chr2	 67313578	 67314651	+	ENSG00000235885.3	ENST00000452716.1	AC023115.2	AC023115.2-002	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00"	NA	inter
CUST_52133_PI429285431	11.068632	P	10.654505	P	1.3324921188	0	lncRNA	55657-1_{1..2233}	hg19_lincRNAsTranscripts_TCONS_l2_00017890 range=chr22:20383531-20427816 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017890 range=chr22:20383531-20427816 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 20383531	 20385763	-	NA	NA	NA	NA	TMEM191B	NA	chr22:20373531-20380440	inter
LNCA_19_P00810894	5.7267704	P	6.4131694	P	0.621402951926714	0	lncRNA	XR_132534	XR_132534	XR_132534	NA	NA	FLJ40288	uncharacterized FLJ40288	NA	THC2655312	NA	"PREDICTED: Homo sapiens hypothetical FLJ40288 (FLJ40288), miscRNA [XR_132534]"	chr7:132356939-132356998	hs|7q32.3	Agilent_HUMAN_G3V2	XR_132534	XR_132534	chr7	132356939	132356998	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012377	2.0737312	A	2.82448	A	0.5942950213206	0	lncRNA	TCONS_l2_00018583	NA	NA	NA	NA	XLOC_l2_009736	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009736), lincRNA [TCONS_l2_00018583]"	chr3:59522077-59522709	hs|3p14.2	Agilent_HUMAN_G3V2	TCONS_l2_00018583	TCONS_l2_00018583	chr3	 59522077	 59522709	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25817_PI429285431	11.58219	P	11.984123	P	0.756843544134546	0	lncRNA	27338-1_{1..476}	lnc-C16orf13-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf13-3:1	chr16	   603561	   604036	-	lnc-C16orf13-3	lnc-C16orf13-3:1	ENSG00000261691.1	LA16c-366D1.3	SOLH	"hg19_refFlat_SOLH:range=chr16:596839-6035165'pad=0,hg19_refFlat_SOLH:range=chr16:596839-6035165'pad=0 3'pad=0 strand=+ repeatMasking=none,-105.50chr16:593561-604636"	NA	inner
CUST_42297_PI429285431	3.0331368	A	3.6081815	P	0.671265452794631	0	lncRNA	44912-1_{1..76}	ENST00000583496 ncrna:snoRNA chromosome:GRCh37:21:45858918:45858993:1 gene:ENSG00000264452 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583496 ncrna:snoRNA chromosome:GRCh37:21:45858918:45858993:1 gene:ENSG00000264452 gene_biotype:snoRNA transcript_biotype:snoRNA	chr21	 45858918	 45858993	+	ENSG00000264452	ENST00000583496	NA	NA	TRPM2	NA	chr21:45848918-45862964	inner
CUST_38985_PI429285431	4.955491	P	5.0910225	P	0.910334397581425	0	lncRNA	39968-1_{1..2332}	n385225|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ufy.2||2.3236400|-0.2495829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385225|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003ufy.2||2.3236400|-0.2495829	chr7	 76668796	 76671127	+	NA	NA	NA	NA	LOC100505767	"hg19_refFlat_SPDYE5:range=chr7:75124435-751312615'pad=0,hg19_refFlat_SPDYE5:range=chr7:75124435-751312615'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.90;hg19_refFlat_SPDYE2L:range=chr7:102292796-1023007125'pad=0,hg19_refFlat_SPDYE2L:range=chr7:102292796-1023007125'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_SPDYE1:range=chr7:44040625-440473675'pad=0,hg19_refFlat_SPDYE1:range=chr7:44040625-440473675'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.90;hg19_refFlat_SPDYE4:range=chr17:8656456-86617005'pad=0,hg19_refFlat_SPDYE4:range=chr17:8656456-86617005'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SPDYE2:range=chr7:102292796-1023007125'pad=0,hg19_refFlat_SPDYE2:range=chr7:102292796-1023007125'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SPDYE6:range=chr7:101988542-1019964685'pad=0,hg19_refFlat_SPDYE6:range=chr7:101988542-1019964685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_SPDYE2L:range=chr7:102193703-1022016225'pad=0,hg19_refFlat_SPDYE2L:range=chr7:102193703-1022016225'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_SPDYE2:range=chr7:102193703-1022016225'pad=0,hg19_refFlat_SPDYE2:range=chr7:102193703-1022016225'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_SPDYE3:range=chr7:99905509-999176135'pad=0,hg19_refFlat_SPDYE3:range=chr7:99905509-999176135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr7:76682095-76689829"	NA	inter
CUST_47098_PI429285431	5.4077735	P	5.5952935	P	0.878113906858696	0	lncRNA	51179-1_{1..531}	"gi|223890227|ref|NR_026894.1| Homo sapiens uncharacterized LOC94023 (DKFZp566F0947), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223890227|ref|NR_026894.1| Homo sapiens uncharacterized LOC94023 (DKFZp566F0947), non-coding RNA"	Chr19	 31640783	 31641313	+	94023	NR_026894.1	NA	NA	NA	NA	NA	inter
CUST_6008_PI429285431	2.3217585	A	2.317303	A	1.00309309102778	0	lncRNA	5933-1_{1..3000}	"transcript_id ""ENST00000577066.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000577066.1"" | genecode_v17"	chr17	 79002933	 79005932	-	ENSG00000226137.3	ENST00000577066.1	BAIAP2-AS1	BAIAP2-AS1-001	BAIAP2	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-59.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-31.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-48.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50chr17:79008947-79018373"	NA	inter
CUST_6028_PI429285431	0.89719754	A	0.9010239	A	0.997351283410509	0	lncRNA	5954-1_{1..2131}	"transcript_id ""ENST00000581677.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000581677.1"" | genecode_v17"	chr18	   268148	   270278	+	ENSG00000263884.1	ENST00000581677.1	RP11-705O1.8	RP11-705O1.8-001	THOC1	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80chr18:258148-268059"	NA	inter
CUST_16727_PI429285431	3.1037416	P	3.360935	P	0.836714069740821	0	lncRNA	18434-1_{1..336}	lnc-SOCS6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOCS6-1:1	chr18	 68007036	 68007371	+	lnc-SOCS6-1	lnc-SOCS6-1:1	XLOC_012709	linc-C18orf55-9	SOCS6	NA	chr18:67997036-67997434	inter
CUST_12510_PI429285431	4.658593	P	4.16859	P	1.40444779620205	0	lncRNA	14121-1_{1..588}	lnc-SERGEF-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERGEF-2:2	chr11	 17718366	 17718953	-	lnc-SERGEF-2	lnc-SERGEF-2:2	XLOC_009385	linc-USH1C	NA	NA	NA	inter
CUST_4342_PI429285431	1.6409237	A	1.4658502	A	1.1290219228506	0	lncRNA	4297-1_{1..752}	"transcript_id ""ENST00000550999.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550999.1"" | genecode_v17"	chr12	 81672980	 81673731	+	ENSG00000257467.1	ENST00000550999.1	RP11-121G22.3	RP11-121G22.3-007	PPFIA2	NA	chr12:81662980-81702062	inner
LNCA_21_P0013301	2.2445066	A	1.2294059	A	2.02104395675904	0	lncRNA	TCONS_l2_00026549	NA	NA	NA	NA	XLOC_l2_013808	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013808), lincRNA [TCONS_l2_00026549]"	chr7:45767813-45766895	hs|7p12.3	Agilent_HUMAN_G3V2	TCONS_l2_00026549	TCONS_l2_00026549	chr7	 45766895	 45767813	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16811_PI429285431	2.2265432	A	2.855153	A	0.646799379548882	0	lncRNA	18517-1_{1..604}	lnc-MINA-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MINA-2:3	chr3	 97956121	 97956724	-	lnc-MINA-2	lnc-MINA-2:3	XLOC_003187	linc-GABRR3-2	OR5H6	NA	chr3:97946121-97966211	inter
CUST_4411_PI429285431	5.2507143	P	5.0050774	P	1.1856160639417	0	lncRNA	4361-1_{1..1957}	"transcript_id ""ENST00000456429.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456429.1"" | genecode_v17"	chr12	112277572	112279528	-	ENSG00000234608.2	ENST00000456429.1	MAPKAPK5-AS1	MAPKAPK5-AS1-002	MAPKAPK5	"hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80chr12:112280279-112290706"	NA	inner
CUST_45478_PI429285431	1.2448907	A	2.6525002	A	0.376935740277622	0	lncRNA	49893-1_{1..1324}	"gi|238018098|ref|NR_027709.1| Homo sapiens IDI2 antisense RNA 1 (IDI2-AS1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|238018098|ref|NR_027709.1| Homo sapiens IDI2 antisense RNA 1 (IDI2-AS1), transcript variant 4, non-coding RNA"	Chr10	  1068577	  1069900	+	55853	NR_027709.1	NA	NA	NA	"hg19_refFlat_IDI1:range=chr10:1087127-10949435'pad=0,hg19_refFlat_IDI1:range=chr10:1087127-10949435'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_IDI2:range=chr10:1065457-10706635'pad=0,hg19_refFlat_IDI2:range=chr10:1065457-10706635'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60"	NA	inter
CUST_9467_PI429285431	3.9151373	P	4.170224	P	0.837936776623127	0	lncRNA	10973-1_{1..519}	lnc-SRL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SRL-1:1	chr16	  4233394	  4233912	-	lnc-SRL-1	lnc-SRL-1:1	XLOC_011866	linc-ADCY9	SRL	NA	chr16:4239375-4243668	inter
CUST_17579_PI429285431	0.9105803	A	1.2885791	A	0.769504250135807	0	lncRNA	19304-1_{1..524}	lnc-C12orf50-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C12orf50-2:1	chr12	 88043196	 88043719	-	lnc-C12orf50-2	lnc-C12orf50-2:1	XLOC_010143	linc-MGAT4C-2	NA	NA	NA	inter
CUST_37973_PI429285431	11.83455	P	12.407724	P	0.672136427419889	0	lncRNA	39061-1_{1..257}	n346525|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2075|NULL|-1.4081400|-0.1159318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346525|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2075|NULL|-1.4081400|-0.1159318	chr7	102918668	102918924	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2259_PI429285431	1.307193	A	0.9102898	A	1.31667857437774	0	lncRNA	2251-1_{1..339}	"transcript_id ""ENST00000513779.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513779.1"" | genecode_v17"	chr5	 91767910	 91768248	-	ENSG00000249776.1	ENST00000513779.1	RP11-133F8.2	RP11-133F8.2-003	NA	NA	NA	inter
CUST_21597_PI429285431	12.542914	P	12.957066	P	0.750460477298117	0	lncRNA	23210-1_{1..337}	lnc-RHBDL1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RHBDL1-1:2	chr16	   732807	   733143	+	lnc-RHBDL1-1	lnc-RHBDL1-1:2	ENSG00000260964.1	LA16c-313D11.11	RHOT2	"hg19_refFlat_JMJD8:range=chr16:732794-7343825'pad=0,hg19_refFlat_JMJD8:range=chr16:732794-7343825'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80chr16:722807-724171"	NA	inner
LNCA_21_P0006668	1.2805297	A	0.87465703	A	1.32489007916593	0	lncRNA	ENST00000366376	NA	NA	NA	NA	XLOC_008446	NA	ENST00000366376	NA	NA	"BROAD Institute lincRNA (XLOC_008446), lincRNA [TCONS_00017810]"	chr10:33973705-33973764	hs|10p11.22	Agilent_HUMAN_G3V2	ENST00000366376	ENST00000366376	chr10	 33973705	 33973764	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1261_PI429285431	1.0205486	A	1.0739337	A	0.96367253935113	0	lncRNA	1253-1_{1..427}	"transcript_id ""ENST00000442062.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442062.1"" | genecode_v17"	chr2	229548253	229548679	-	ENSG00000228226.1	ENST00000442062.1	AC074019.1	AC074019.1-001	NA	NA	NA	inter
CUST_12827_PI429285431	1.6218812	A	2.5707004	A	0.518056301051062	0	lncRNA	14454-1_{1..229}	lnc-SPERT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPERT-1:1	chr13	 46295687	 46295915	+	lnc-SPERT-1	lnc-SPERT-1:1	XLOC_010379	linc-LRCH1-4	SPERT	NA	chr13:46285687-46288693	inter
CUST_46726_PI429285431	5.6688075	P	5.602314	P	1.04716842366491	0	lncRNA	50879-3_{6001..7840}	"gi|384367971|ref|NR_047571.1| Homo sapiens ankyrin repeat and FYVE domain containing 1 (ANKFY1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|384367971|ref|NR_047571.1| Homo sapiens ankyrin repeat and FYVE domain containing 1 (ANKFY1), transcript variant 4, non-coding RNA"	Chr17	  4072665	  4074504	-	51479	NR_047571.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003072	4.2967787	P	4.362073	P	0.955750331123449	0	lncRNA	TCONS_00006334	NA	NA	NA	NA	XLOC_002952	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002952), lincRNA [TCONS_00006334]"	chr3:184445341-184446670	hs|3q27.1	Agilent_HUMAN_G3V2	TCONS_00006334	TCONS_00006334	chr3	184445341	184446670	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14894_PI429285431	2.1639116	A	4.2590504	P	0.234045543527813	0	lncRNA	16558-1_{1..409}	lnc-IGSF10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IGSF10-1:1	chr3	151318535	151318943	-	lnc-IGSF10-1	lnc-IGSF10-1:1	XLOC_003286	linc-IGSF10-1	NA	NA	NA	inter
CUST_19234_PI429285431	3.0935988	P	4.31372	P	0.429246655933662	0	lncRNA	20903-2_{3001..4271}	lnc-XPC-5:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-XPC-5:7	chr3	 14557285	 14558555	-	lnc-XPC-5	lnc-XPC-5:7	ENSG00000144596.7	GRIP2	GRIP2	NA	chr3:14544285-14564366	inner
LNCA_21_P0005330	5.0149455	P	5.1956563	P	0.882268205337202	0	lncRNA	ENST00000420146	NA	NA	NA	NA	XLOC_006586	NA	ENST00000420146	NA	NA	"BROAD Institute lincRNA (XLOC_006586), lincRNA [TCONS_00013247]"	chr7:122709414-122709355	hs|7q31.32	Agilent_HUMAN_G3V2	ENST00000420146	ENST00000420146	chr7	122709355	122709414	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005552	5.9106646	P	6.4046	P	0.710085474275752	0	lncRNA	ENST00000520395	NA	NA	NA	NA	XLOC_006025	NA	ENST00000520395	THC2700707	NA	"BROAD Institute lincRNA (XLOC_006025), lincRNA [TCONS_00014096]"	chr7:27226401-27226460	hs|7p15.2	Agilent_HUMAN_G3V2	ENST00000520395	ENST00000520395	chr7	 27226401	 27226460	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24307_PI429285431	1.1071041	A	0.88835824	A	1.16372151932339	0	lncRNA	25858-1_{1..763}	lnc-RPLP1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPLP1-3:3	chr15	 70133807	 70134569	+	lnc-RPLP1-3	lnc-RPLP1-3:3	ENSG00000259703.1	LINC00593	NA	NA	NA	inter
LNCA_21_P0005490	0.88096374	A	0.873942	A	1.00487896285059	0	lncRNA	TCONS_00013778	NA	NA	NA	NA	XLOC_006411	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006411), lincRNA [TCONS_00013778]"	chr7:36015574-36015515	hs|7p14.2	Agilent_HUMAN_G3V2	TCONS_00013778	TCONS_00013778	chr7	 36015515	 36015574	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39554_PI429285431	0.88067555	A	1.4722099	A	0.663636733771131	0	lncRNA	40498-1_{1..1863}	n387496|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011fum.1||-0.0251809|-0.3413324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387496|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011fum.1||-0.0251809|-0.3413324	chr6	  1162085	  1163947	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40"	NA	inter
LNCA_21_P0008889	2.0365818	A	2.2832694	A	0.842829315312924	0	lncRNA	BC040193	NA	BC040193	NA	Hs.548511	XLOC_011677	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011677), lincRNA [TCONS_00024285]"	chr16:24721180-24721239	hs|16p12.1	Agilent_HUMAN_G3V2	BC040193	BC040193	chr16	 24721180	 24721239	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28940_PI429285431	2.192236	A	2.3777506	A	0.879335366732711	0	lncRNA	30659-2_{3001..4120}	n326368|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098960|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098960|0.2771360|-0.2274414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326368|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098960|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098960|0.2771360|-0.2274414	chr1	154927112	154928231	-	NA	NA	NA	NA	PBXIP1	NA	chr1:154916556-154928567	inner
LNCA_21_P0006654	3.1352358	P	2.6297452	A	1.41960602252289	0	lncRNA	ENST00000429092	NA	NA	NA	NA	XLOC_008391	NA	ENST00000429092	NA	NA	"BROAD Institute lincRNA (XLOC_008391), lincRNA [TCONS_00017789]"	chr10:11497324-11497383	hs|10p14	Agilent_HUMAN_G3V2	ENST00000429092	ENST00000429092	chr10	 11497324	 11497383	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_278_PI429201921	3.1499374	A	3.5204349	P	0.773515711058016	0	lncRNA	198-2_{3001..6000}	TC05002830.hg.1	 TCONS_l2_00022763-XLOC_l2_011924 // Broad TUCP // linc-IRX2-8 chr5:-:4968059-4974687 // chr5 // 100 // 100 // 0 // --- // 0///TCONS_l2_00023652-XLOC_l2_011924 // Broad TUCP // linc-IRX2-8 chr5:-:4967876-4970538 // chr5 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr5:-:4967876-4970538	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00023652-XLOC_l2_011924	linc-IRX2-8	chr5	  4967876	  4970538	-	NA	NA	NA	NA	PTP4A2	NA	chr1:32388621-32403988	Unknown
LNCA_21_P0003864	0.87266237	A	1.705939	A	0.561253083075207	0	lncRNA	TCONS_00008937	NA	NA	NA	NA	XLOC_003784	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003784), lincRNA [TCONS_00008937]"	chr4:174440701-174440760	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_00008937	TCONS_00008937	chr4	174440701	174440760	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003474	0.870598	A	0.8691685	A	1.00099134495251	0	lncRNA	TCONS_00007773	NA	NA	NA	NA	XLOC_003969	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003969), lincRNA [TCONS_00007773]"	chr4:64009007-63994055	hs|4q13.1	Agilent_HUMAN_G3V2	TCONS_00007773	TCONS_00007773	chr4	 63994055	 64009007	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1801_PI429285431	1.384003	A	0.91793567	A	1.38133891317365	0	lncRNA	1788-1_{1..785}	"transcript_id ""ENST00000561705.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000561705.1"" | genecode_v17"	chr4	 76006912	 76007696	-	ENSG00000260265.1	ENST00000561705.1	RP11-44F21.5	RP11-44F21.5-002	NA	NA	NA	inter
LNCA_21_P0010081	2.0119631	A	1.8959248	A	1.08375473748189	0	lncRNA	TCONS_00028503	NA	NA	NA	NA	XLOC_013465	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013465), lincRNA [TCONS_00028503]"	chr20:12946772-12947704	hs|20p12.1	Agilent_HUMAN_G3V2	TCONS_00028503	TCONS_00028503	chr20	 12946772	 12947704	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2435_PI429285431	5.53108	P	5.976379	P	0.734432089075017	0	lncRNA	2427-1_{1..2361}	"transcript_id ""ENST00000521128.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521128.1"" | genecode_v17"	chr5	173137443	173139803	-	ENSG00000253686.1	ENST00000521128.1	CTB-43E15.3	CTB-43E15.3-001	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30"	NA	inter
LNCA_21_P0008303	2.9751923	A	3.6665273	P	0.619280532589246	0	lncRNA	TCONS_00022438	NA	NA	NA	NA	XLOC_010775	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010775), lincRNA [TCONS_00022438]"	chr14:025719853-025719909	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022438	TCONS_00022438	chr14	 25719853	 25719909	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48260_PI429285431	3.5316162	P	3.58941	A	0.96073216865829	0	lncRNA	52123-1_{1..260}	hg19_lincRNAsTranscripts_TCONS_l2_00000050 range=chr1:2496461-2497869 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000050 range=chr1:2496461-2497869 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	  2496461	  2496720	+	NA	NA	NA	NA	TNFRSF14	NA	chr1:2487805-2495268	inter
CUST_4534_PI429285431	0.8981269	A	0.90592074	A	0.994612287841478	0	lncRNA	4482-1_{1..617}	"transcript_id ""ENST00000542797.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000542797.1"" | genecode_v17"	chr12	132106436	132107052	-	ENSG00000256258.1	ENST00000542797.1	RP11-495K9.9	RP11-495K9.9-001	NA	NA	NA	inter
CUST_38101_PI429285431	3.4437897	P	3.2855852	P	1.11589748801973	0	lncRNA	39177-1_{1..1079}	n381131|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001cyw.1||-0.3147490|-0.2724964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381131|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001cyw.1||-0.3147490|-0.2724964	chr1	 58933598	 58934676	-	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00"	NA	inter
CUST_42152_PI429285431	3.670842	P	3.697019	P	0.982019106844154	0	lncRNA	44181-1_{1..86}	ENST00000385034 ncrna:miRNA chromosome:GRCh37:X:49768109:49768194:1 gene:ENSG00000207768 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385034 ncrna:miRNA chromosome:GRCh37:X:49768109:49768194:1 gene:ENSG00000207768 gene_biotype:miRNA transcript_biotype:miRNA	chrX	 49768109	 49768194	+	ENSG00000207768	ENST00000385034	NA	NA	CLCN5	NA	chrX:49758109-49778194	inner
CUST_9763_PI429285431	8.52401	P	8.498458	P	1.01786907186492	0	lncRNA	11280-1_{1..455}	lnc-GPR78-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR78-1:1	chr4	  8562292	  8562746	+	lnc-GPR78-1	lnc-GPR78-1:1	XLOC_003447	linc-GPR78-1	NA	NA	NA	inter
CUST_16646_PI429285431	0.9170895	A	0.9377827	A	0.985758943738137	0	lncRNA	18348-1_{1..1037}	lnc-PFKP-9:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PFKP-9:3	chr10	  2612388	  2613424	+	lnc-PFKP-9	lnc-PFKP-9:3	XLOC_008342	linc-PFKP-3	NA	NA	NA	inter
LNCA_21_P0006979	0.9021239	A	0.9171354	A	0.989648767702855	0	lncRNA	TCONS_00018461	NA	NA	NA	NA	XLOC_008759	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008759), lincRNA [TCONS_00018461]"	chr10:27594845-27594786	hs|10p12.1	Agilent_HUMAN_G3V2	TCONS_00018461	TCONS_00018461	chr10	 27594786	 27594845	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23284_PI429285431	0.91005117	A	1.6107051	A	0.615293249647149	0	lncRNA	24855-1_{1..571}	lnc-RNASE10-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNASE10-2:2	chr14	 21070822	 21071392	+	lnc-RNASE10-2	lnc-RNASE10-2:2	ENSG00000258573.1	RP11-14J7.6	NA	"hg19_refFlat_RNASE12:range=chr14:21058439-210588825'pad=0,hg19_refFlat_RNASE12:range=chr14:21058439-210588825'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00"	NA	inter
LNCA_21_P0007488	1.8421097	A	0.9073659	A	1.9115511435578	0	lncRNA	BC037383	NA	BC037383	NA	Hs.171314	XLOC_009818	NA	NA	THC2605993	NA	"BROAD Institute lincRNA (XLOC_009818), lincRNA [TCONS_00020191]"	chr12:81164389-81164448	hs|12q21.31	Agilent_HUMAN_G3V2	BC037383	BC037383	chr12	 81164389	 81164448	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38381_PI429285431	3.387533	A	3.5171878	P	0.914050132869041	0	lncRNA	39420-1_{1..2194}	n382276|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ykr.1||-0.7345770|-0.2645444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382276|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ykr.1||-0.7345770|-0.2645444	chr14	102352724	102354917	+	NA	NA	NA	NA	PPP2R5C	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70chr14:102342724-102364918"	NA	inner
LNCA_21_P0009025	3.430659	P	3.0653985	P	1.28811419664698	0	lncRNA	TCONS_00024636	NA	NA	NA	NA	XLOC_011927	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011927), lincRNA [TCONS_00024636]"	chr16:34765282-34765223	hs|16p11.1	Agilent_HUMAN_G3V2	TCONS_00024636	TCONS_00024636	chr16	 34765223	 34765282	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15686_PI429285431	4.7149644	P	4.9723883	P	0.836580398256854	0	lncRNA	17373-1_{1..1803}	lnc-BCKDHB-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BCKDHB-1:2	chr6	 81163827	 81165629	+	lnc-BCKDHB-1	lnc-BCKDHB-1:2	XLOC_005365	linc-TPBG-3	NA	NA	NA	inter
LNCA_21_P0001260	1.0628444	A	0.8970726	A	1.12176602982376	0	lncRNA	TCONS_00000830	NA	NA	NA	NA	XLOC_000037	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000037), lincRNA [TCONS_00000830]"	chr1:5551586-5551645	hs|1p36.31	Agilent_HUMAN_G3V2	TCONS_00000830	TCONS_00000830	chr1	  5551586	  5551645	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17286_PI429285431	1.8689072	A	1.7686797	A	1.07194248487407	0	lncRNA	19004-1_{1..891}	lnc-SLC2A13-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC2A13-1:2	chr12	 40552238	 40553128	-	lnc-SLC2A13-1	lnc-SLC2A13-1:2	XLOC_010052	linc-SLC2A13-4	NA	NA	NA	inter
LNCA_21_P0010100	0.8835946	A	1.7827798	A	0.536189472888229	0	lncRNA	TCONS_00028587	NA	NA	NA	NA	XLOC_013608	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013608), lincRNA [TCONS_00028587]"	chr20:61748496-61748555	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028587	TCONS_00028587	chr20	 61748496	 61748555	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00317547	1.5072486	A	0.88801646	A	1.53605741249458	0	lncRNA	XR_110179	XR_110179	XR_110179	NA	Hs.729388	LOC100507429	uncharacterized LOC100507429	NA	THC2504912	NA	"PREDICTED: Homo sapiens hypothetical LOC100507429 (LOC100507429), miscRNA [XR_110179]"	chr6:138144988-138144929	hs|6q23.3	Agilent_HUMAN_G3V2	XR_110179	XR_110179	chr6	138144929	138144988	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49051_PI429285431	0.90780663	A	1.2801201	A	0.772542672684398	0	lncRNA	52879-1_{1..378}	hg19_lincRNAsTranscripts_TCONS_l2_00020894 range=chr4:174846872-174850631 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020894 range=chr4:174846872-174850631 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	174846872	174847249	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8693_PI429285431	1.161819	A	2.2042205	A	0.485518609821352	0	lncRNA	10240-1_{1..1589}	lnc-OR10H1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OR10H1-1:1	chr19	 15945165	 15946753	-	lnc-OR10H1-1	lnc-OR10H1-1:1	ENSG00000250388	AC004510.1	NA	NA	NA	inter
CUST_42280_PI429285431	4.8717246	P	5.09497	P	0.856636229993198	0	lncRNA	44892-1_{1..136}	ENST00000384676 ncrna:snoRNA chromosome:GRCh37:11:19612703:19612838:-1 gene:ENSG00000207407 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384676 ncrna:snoRNA chromosome:GRCh37:11:19612703:19612838:-1 gene:ENSG00000207407 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 19612703	 19612838	-	ENSG00000207407	ENST00000384676	NA	NA	NAV2	NA	chr11:19602703-19622838	inner
CUST_12178_PI429285431	1.507808	A	1.0361996	A	1.38665452948066	0	lncRNA	13778-1_{1..294}	lnc-ANKRD30A-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD30A-6:1	chr10	 37068284	 37068577	+	lnc-ANKRD30A-6	lnc-ANKRD30A-6:1	XLOC_008451	linc-ANKRD30A-2	NA	NA	NA	inter
LNCA_21_P0010140	1.3102542	A	2.0087345	A	0.616220977159401	0	lncRNA	ENST00000449746	NA	NA	NA	NA	XLOC_013865	NA	ENST00000449746	NA	NA	"BROAD Institute lincRNA (XLOC_013865), lincRNA [TCONS_00028794]"	chr21:16440055-16440114	hs|21q21.1	Agilent_HUMAN_G3V2	ENST00000449746	ENST00000449746	chr21	 16440055	 16440114	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007986	0.8789837	A	1.7088715	A	0.562572992571277	0	lncRNA	ENST00000415283	NA	NA	NA	NA	XLOC_010560	NA	ENST00000415283	NA	NA	"BROAD Institute lincRNA (XLOC_010560), lincRNA [TCONS_00021631]"	chr13:31569360-31569301	hs|13q12.3	Agilent_HUMAN_G3V2	ENST00000415283	ENST00000415283	chr13	 31569301	 31569360	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010398	6.7776155	P	6.9932137	P	0.861189001709255	0	lncRNA	TCONS_00029529	NA	NA	NA	NA	XLOC_014172	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014172), lincRNA [TCONS_00029529]"	chr22:23857214-23857273	hs|22q11.23	Agilent_HUMAN_G3V2	TCONS_00029529	TCONS_00029529	chr22	 23857214	 23857273	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46190_PI429285431	1.181809	A	0.9212858	A	1.19791305454013	0	lncRNA	50436-1_{1..645}	"gi|390608672|ref|NR_046693.1| Homo sapiens STARD13 antisense RNA 2 (STARD13-AS2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|390608672|ref|NR_046693.1| Homo sapiens STARD13 antisense RNA 2 (STARD13-AS2), non-coding RNA"	Chr13	 33851691	 33852335	+	100874241	NR_046693.1	NA	NA	NA	NA	NA	inter
CUST_45884_PI429285431	1.0892181	A	1.1968188	A	0.92813032296045	0	lncRNA	50206-2_{3001..6000}	"gi|403048747|ref|NR_073142.1| Homo sapiens progesterone receptor (PGR), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|403048747|ref|NR_073142.1| Homo sapiens progesterone receptor (PGR), transcript variant 5, non-coding RNA"	Chr11	100903355	100906354	-	5241	NR_073142.2	NA	NA	NA	NA	NA	inter
CUST_4234_PI429285431	1.80672	A	2.4016168	A	0.662091814777904	0	lncRNA	4193-1_{1..836}	"transcript_id ""ENST00000553211.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553211.1"" | genecode_v17"	chr12	 43549118	 43549953	+	ENSG00000258331.1	ENST00000553211.1	RP11-118A3.1	RP11-118A3.1-001	NA	NA	NA	inter
CUST_52066_PI429285431	3.224416	A	3.5369015	P	0.805253259239837	0	lncRNA	55595-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00018010 range=chr22:30920673-30941110 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018010 range=chr22:30920673-30941110 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 30920673	 30923672	-	NA	NA	NA	NA	SEC14L6	"hg19_refFlat_SIRPG:range=chr20:1610870-16383605'pad=0,hg19_refFlat_SIRPG:range=chr20:1610870-16383605'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SIRPB1:range=chr20:1579470-16005905'pad=0,hg19_refFlat_SIRPB1:range=chr20:1579470-16005905'pad=0 3'pad=0 strand=- repeatMasking=none,-99.50;hg19_refFlat_SIRPA:range=chr20:1876094-19182145'pad=0,hg19_refFlat_SIRPA:range=chr20:1876094-19182145'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.30;hg19_refFlat_SIRPB1:range=chr20:1546801-16005905'pad=0,hg19_refFlat_SIRPB1:range=chr20:1546801-16005905'pad=0 3'pad=0 strand=- repeatMasking=none,-97.60chr22:30920917-30942669"	NA	inner
LNCA_21_P0011459	2.7943754	A	3.2992692	P	0.704712251102441	0	lncRNA	BC036249	NA	BC036249	NA	Hs.555158	XLOC_l2_005418	NA	NA	THC2605839	NA	"BROAD Institute lincRNA (XLOC_l2_005418), lincRNA [TCONS_l2_00010042]"	chr16:21609046-21608987	hs|16p12.2	Agilent_HUMAN_G3V2	BC036249	BC036249	chr16	 21608987	 21609046	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007217	9.579126	P	9.728718	P	0.901505375934983	0	lncRNA	TCONS_00019318	NA	NA	NA	NA	XLOC_009152	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009152), lincRNA [TCONS_00019318]"	chr11:63263016-63263075	hs|11q12.3	Agilent_HUMAN_G3V2	TCONS_00019318	TCONS_00019318	chr11	 63263016	 63263075	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16817_PI429285431	1.2497243	A	1.6684854	A	0.748066743437984	0	lncRNA	18525-1_{1..1248}	lnc-DNAJC8-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAJC8-1:2	chr1	 28573347	 28574594	-	lnc-DNAJC8-1	lnc-DNAJC8-1:2	XLOC_000757	linc-DNAJC8-2	ATPIF1	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.70;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-20.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.21;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-23.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40chr1:28563347-28564616"	NA	inter
CUST_33807_PI429285431	1.1599709	A	1.0601541	A	1.07163737249186	0	lncRNA	35359-1_{1..3000}	n340596|BC045192|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3058|NULL|-0.1231690|-0.4023262	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n340596|BC045192|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3058|NULL|-0.1231690|-0.4023262	chr5	116751207	116754206	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80"	NA	inter
LNCA_21_P0003936	9.365863	P	9.342878	P	1.0160595787563	0	lncRNA	ENST00000506550	XR_108602	XR_108602	NA	Hs.662277	XLOC_004844	NA	ENST00000506550	THC2605874	NA	"PREDICTED: Homo sapiens hypothetical LOC100506526 (LOC100506526), miscRNA [XR_108602]"	chr5:61028682-61028623	hs|5q12.1	Agilent_HUMAN_G3V2	ENST00000506550	ENST00000506550	chr5	 61028623	 61028682	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12376_PI429285431	1.2058518	A	1.3989837	A	0.874704790390889	0	lncRNA	13988-1_{1..411}	lnc-CRH-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRH-4:2	chr8	 66933570	 66933980	-	lnc-CRH-4	lnc-CRH-4:2	XLOC_007107	linc-PDE7A	DNAJC5B	NA	chr8:66933791-66943630	inter
LNCA_21_P0006528	5.3818297	P	5.6233916	P	0.845829099427487	0	lncRNA	TCONS_00017294	NA	NA	NA	NA	XLOC_008117	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008117), lincRNA [TCONS_00017294]"	chrX:14006838-13970802	hs|Xp22.2	Agilent_HUMAN_G3V2	TCONS_00017294	TCONS_00017294	chrX	 13970802	 14006838	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44732_PI429285431	10.153557	P	10.476165	P	0.799623069376338	0	lncRNA	49286-1_{1..2301}	"gi|237858598|ref|NR_027692.1| Homo sapiens PHD finger protein 1 (PHF1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237858598|ref|NR_027692.1| Homo sapiens PHD finger protein 1 (PHF1), transcript variant 3, non-coding RNA"	NT_167249.1	  4859021	  4861321	+	5252	NR_027692.1	NA	NA	NA	NA	NA	Unknown
CUST_45268_PI429285431	1.0295147	A	1.0294361	A	1.00005448285253	0	lncRNA	49719-1_{1..1164}	"gi|299890815|ref|NR_033916.1| Homo sapiens hCG1814486 (LOC728724), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|299890815|ref|NR_033916.1| Homo sapiens hCG1814486 (LOC728724), non-coding RNA"	Chr8	130228713	130229876	-	728724	NR_033916.1	NA	NA	NA	NA	NA	inter
CUST_19570_PI429285431	0.9157054	A	2.1488004	A	0.425403851420336	0	lncRNA	21226-1_{1..528}	lnc-GSG1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GSG1L-1:1	chr16	 27730034	 27730561	-	lnc-GSG1L-1	lnc-GSG1L-1:1	ENSG00000261329.1	CTD-2049O4.1	KIAA0556	NA	chr16:27720034-27740104	inner
LNCA_21_P0003843	0.9194112	A	0.96491635	A	0.968950486012285	0	lncRNA	ENST00000504132	NA	NA	NA	NA	XLOC_003636	NA	ENST00000504132	THC2653827	NA	"BROAD Institute lincRNA (XLOC_003636), lincRNA [TCONS_00008865]"	chr4:107370176-107370235	hs|4q24	Agilent_HUMAN_G3V2	ENST00000504132	ENST00000504132	chr4	107370176	107370235	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31152_PI429285431	5.2311554	P	4.938611	P	1.2247984820907	0	lncRNA	32947-1_{1..353}	n337481|EF139845|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394904|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394904|1.1616700|-0.2153239	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337481|EF139845|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394904|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394904|1.1616700|-0.2153239	chr4	187510226	187510578	-	NA	NA	NA	NA	FAT1	NA	chr4:187508937-187526954	inner
CUST_596_PI429285431	1.431931	A	1.0936892	A	1.26421496690367	0	lncRNA	588-1_{1..599}	"transcript_id ""ENST00000433734.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433734.1"" | genecode_v17"	chr1	229228562	229229160	-	ENSG00000236975.1	ENST00000433734.1	RP5-1065P14.2	RP5-1065P14.2-001	NA	NA	NA	inter
CUST_23824_PI429285431	6.277596	P	6.3071084	P	0.979751376599527	0	lncRNA	25387-1_{1..623}	lnc-SPANXN4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPANXN4-1:1	chrX	142604470	142605092	+	lnc-SPANXN4-1	lnc-SPANXN4-1:1	ENSG00000227303.1	GS1-256O22.5	SPANXN3	NA	chrX:142596564-142605307	inner
LNCA_21_P0004284	0.91498184	A	0.9405474	A	0.982435392340035	0	lncRNA	TCONS_00010060	NA	NA	NA	NA	XLOC_004511	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004511), lincRNA [TCONS_00010060]"	chr5:113392859-113441459	hs|5q22.3	Agilent_HUMAN_G3V2	TCONS_00010060	TCONS_00010060	chr5	113392859	113441459	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34889_PI429285431	0.9357095	A	0.96614087	A	0.979127491855399	0	lncRNA	36314-1_{1..2897}	n341804|AK057274|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4282|NULL|-0.9982980|-0.1870553	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341804|AK057274|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4282|NULL|-0.9982980|-0.1870553	chr9	137884803	137887699	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009598	0.89255565	A	1.9290164	A	0.487522007183055	0	lncRNA	TCONS_00026594	NA	NA	NA	NA	XLOC_012619	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012619), lincRNA [TCONS_00026594]"	chr18:6778936-6778995	hs|18p11.31	Agilent_HUMAN_G3V2	TCONS_00026594	TCONS_00026594	chr18	  6778936	  6778995	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014230	2.7921488	A	2.9332016	A	0.906857139013034	0	lncRNA	ENST00000463269	XR_108948	XR_108948	NA	NA	CERCAM	cerebral endothelial cell adhesion molecule	ENST00000463269	THC2527821	GO:0005886|GO:0005783|GO:0007159|GO:0006928|GO:0005788|GO:0007155|GO:0009103	"PREDICTED: Homo sapiens hypothetical LOC100506065 (LOC100506065), miscRNA [XR_108948]"	chr9:131181463-131181522	hs|9q34.11	Agilent_HUMAN_G3V2	ENST00000463269	ENST00000463269	chr9	131181463	131181522	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48122_PI429285431	0.885687	A	1.0235285	A	0.908877963776008	0	lncRNA	51992-2_{3001..4417}	"gi|310110015|ref|XR_111092.1| PREDICTED: Homo sapiens uncharacterized LOC100130698 (LOC100130698), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310110015|ref|XR_111092.1| PREDICTED: Homo sapiens uncharacterized LOC100130698 (LOC100130698), misc_RNA"	NA	NA	NA	NA	NA	XR_111092.1	NA	NA	NA	"hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00"	NA	Unknown
LNCA_21_P0003707	1.8007452	A	0.88029724	A	1.89270289065368	0	lncRNA	TCONS_00008390	NA	NA	NA	NA	XLOC_003840	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003840), lincRNA [TCONS_00008390]"	chr4:190497574-190497633	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008390	TCONS_00008390	chr4	190497574	190497633	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007244	4.3727565	P	4.871938	P	0.707508065653557	0	lncRNA	TCONS_00019405	NA	NA	NA	NA	XLOC_009228	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009228), lincRNA [TCONS_00019405]"	chr11:79868049-79868108	hs|11q14.1	Agilent_HUMAN_G3V2	TCONS_00019405	TCONS_00019405	chr11	 79868049	 79868108	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001702	4.1303673	P	3.8126674	P	1.24634191140446	0	lncRNA	XR_110825	XR_110825	XR_110825	NA	Hs.729259	LOC100505794	uncharacterized LOC100505794	NA	THC2523868	NA	"PREDICTED: Homo sapiens hypothetical LOC100505794, transcript variant 2 (LOC100505794), miscRNA [XR_110825]"	chr1:146646082-146646141	hs|1q21.1	Agilent_HUMAN_G3V2	XR_110825	XR_110825	chr1	146646082	146646141	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10481_PI429285431	5.1737566	P	5.7736893	P	0.659784732838086	0	lncRNA	12009-1_{1..818}	lnc-AC069257.9.1-4:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC069257.9.1-4:16	chr3	195437722	195438539	+	lnc-AC069257.9.1-4	lnc-AC069257.9.1-4:16	XLOC_002997	linc-MUC20-1	MUC20	NA	chr3:195447753-195448452	inter
CUST_16107_PI429285431	1.4772129	A	1.0551658	A	1.33982734336822	0	lncRNA	17814-1_{1..1522}	lnc-FOXG1-6:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXG1-6:6	chr14	 27133246	 27134767	+	lnc-FOXG1-6	lnc-FOXG1-6:6	XLOC_010776	linc-FOXG1-5	NA	NA	NA	inter
LNCA_21_P0001885	1.0659546	A	0.8734429	A	1.14275148997566	0	lncRNA	ENST00000448431	NA	BC039486	NA	Hs.547548	XLOC_001547	NA	ENST00000448431	THC2728350	NA	"BROAD Institute lincRNA (XLOC_001547), lincRNA [TCONS_00002943]"	chr2:83750428-83750487	hs|2p11.2	Agilent_HUMAN_G3V2	ENST00000448431	ENST00000448431	chr2	 83750428	 83750487	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002346	2.707748	A	3.1065333	P	0.758496642772502	0	lncRNA	TCONS_00004014	NA	NA	NA	NA	XLOC_001853	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001853), lincRNA [TCONS_00004014]"	chr2:216777342-216777401	hs|2q35	Agilent_HUMAN_G3V2	TCONS_00004014	TCONS_00004014	chr2	216777342	216777401	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42983_PI429285431	4.9282684	P	5.143264	P	0.861548787300507	0	lncRNA	46138-1_{1..75}	ENST00000364699 ncrna:snoRNA chromosome:GRCh37:14:101441143:101441217:1 gene:ENSG00000201569 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364699 ncrna:snoRNA chromosome:GRCh37:14:101441143:101441217:1 gene:ENSG00000201569 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101441143	101441217	+	ENSG00000201569	ENST00000364699	NA	NA	NA	NA	NA	inter
CUST_8013_PI429285431	4.359379	P	4.087437	P	1.20743204867975	0	lncRNA	9625-1_{1..1567}	lnc-ENDOD1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ENDOD1-1:7	chr11	 94966618	 94968184	+	lnc-ENDOD1-1	lnc-ENDOD1-1:7	ENSG00000245552	RP11-712B9.2	SESN3	NA	chr11:94956618-94964246	inter
LNCA_21_P0012177	0.8814498	A	0.874751	A	1.00465405094254	0	lncRNA	TCONS_l2_00017094	NA	NA	NA	NA	XLOC_l2_009105	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009105), lincRNA [TCONS_l2_00017094]"	chr21:45894999-45895058	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_l2_00017094	TCONS_l2_00017094	chr21	 45894999	 45895058	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007273	1.9248233	A	1.8548336	A	1.04970918928578	0	lncRNA	THC2732835	NA	NA	NA	NA	XLOC_009272	NA	NA	THC2732835	NA	"BROAD Institute lincRNA (XLOC_009272), lincRNA [TCONS_00019459]"	chr11:108372478-108372537	hs|11q22.3	Agilent_HUMAN_G3V2	THC2732835	THC2732835	chr11	108372478	108372537	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008175	0.8814565	A	0.87517184	A	1.00436569636695	0	lncRNA	TCONS_00022041	NA	NA	NA	NA	XLOC_010641	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010641), lincRNA [TCONS_00022041]"	chr13:64159653-64159594	hs|13q21.31	Agilent_HUMAN_G3V2	TCONS_00022041	TCONS_00022041	chr13	 64159594	 64159653	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2966_PI429285431	3.168772	P	2.8019526	A	1.28950681701835	0	lncRNA	2945-1_{1..628}	"transcript_id ""ENST00000523195.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523195.3"" | genecode_v17"	chr8	   329088	   329715	-	ENSG00000182366.4	ENST00000523195.3	FAM87A	FAM87A-002	NA	NA	NA	inter
CUST_34778_PI429285431	3.769746	P	4.053558	P	0.82141773409472	0	lncRNA	36215-1_{1..1022}	n341685|BC031693|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4156|NULL|-1.0646000|-0.2846625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341685|BC031693|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4156|NULL|-1.0646000|-0.2846625	chr9	 37078809	 37079830	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47535_PI429285431	1.2068496	A	2.0891056	A	0.542518409852083	0	lncRNA	51545-2_{3001..4733}	"gi|224450999|ref|NR_027033.1| Homo sapiens MIRLET7B host gene (non-protein coding) (MIRLET7BHG), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224450999|ref|NR_027033.1| Homo sapiens MIRLET7B host gene (non-protein coding) (MIRLET7BHG), non-coding RNA"	Chr22	 46484877	 46486609	+	400931	NR_027033.1	NA	NA	NA	"hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-55.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90"	NA	inter
CUST_18568_PI429285431	0.8994017	A	0.89479524	A	1.00319805767109	0	lncRNA	20277-1_{1..1116}	lnc-AL592284.1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL592284.1-1:4	chr1	144596284	144597399	+	lnc-AL592284.1-1	lnc-AL592284.1-1:4	ENSG00000225241	NBPF8	NA	NA	NA	inter
CUST_43878_PI429285431	8.773272	P	8.897918	P	0.917229079856182	0	lncRNA	48597-1_{1..1488}	"gi|282154795|ref|NR_033179.1| Homo sapiens transmembrane protein 150A (TMEM150A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|282154795|ref|NR_033179.1| Homo sapiens transmembrane protein 150A (TMEM150A), transcript variant 2, non-coding RNA"	Chr2	 85825670	 85827157	-	129303	NR_033179.1	NA	NA	NA	NA	NA	inter
CUST_15166_PI429285431	0.8934312	A	0.89965904	A	0.99569249429345	0	lncRNA	16828-1_{1..835}	lnc-OR52K2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR52K2-1:1	chr11	  4431629	  4432463	+	lnc-OR52K2-1	lnc-OR52K2-1:1	XLOC_009037	linc-OR52K2-1	OR52K2	NA	chr11:4439290-4442109	inter
CUST_28803_PI429285431	2.6831863	A	2.8035707	A	0.91994250317275	0	lncRNA	30511-1_{1..517}	n326211|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092499|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092499|-1.2973100|-0.2691776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326211|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000092499|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000092499|-1.2973100|-0.2691776	chr1	221055042	221055558	+	NA	NA	NA	NA	HLX	NA	chr1:221052743-221058401	inner
CUST_3806_PI429285431	1.8702021	A	2.035533	A	0.891723968011522	0	lncRNA	3774-1_{1..401}	"transcript_id ""ENST00000416249.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000416249.1"" | genecode_v17"	chr10	112629501	112629901	+	ENSG00000232470.1	ENST00000416249.1	RP11-313D6.3	RP11-313D6.3-001	PDCD4	NA	chr10:112631553-112641352	inter
CUST_37190_PI429285431	10.697063	P	10.673744	P	1.01629483511747	0	lncRNA	38302-1_{1..323}	n345621|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1170|NULL|-1.3428300|-0.1568157	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345621|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1170|NULL|-1.3428300|-0.1568157	chr4	   379943	   380265	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4754_PI429285431	8.25112	P	8.586821	P	0.792399019402902	0	lncRNA	4698-1_{1..470}	"transcript_id ""ENST00000555350.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555350.1"" | genecode_v17"	chr14	 28103331	 28103800	+	ENSG00000258548.1	ENST00000555350.1	LINC00645	LINC00645-003	NA	NA	NA	inter
LNCA_21_P0012629	2.5219867	A	2.1627688	A	1.28273032757838	0	lncRNA	TCONS_l2_00020853	NA	NA	NA	NA	XLOC_l2_010919	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010919), lincRNA [TCONS_l2_00020853]"	chr4:161739956-161740015	hs|4q32.1	Agilent_HUMAN_G3V2	TCONS_l2_00020853	TCONS_l2_00020853	chr4	161739956	161740015	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30023_PI429285431	0.9184747	A	1.0941026	A	0.885382092940792	0	lncRNA	31791-1_{1..200}	n334471|U17627|Non-proteincodingtranscript|Homosapiens|NULL|H-invitationalv7.5|HIT000218408|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218408|-1.1474100|-0.2224834	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334471|U17627|Non-proteincodingtranscript|Homosapiens|NULL|H-invitationalv7.5|HIT000218408|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218408|-1.1474100|-0.2224834	chr21	 39771731	 39771930	+	NA	NA	NA	NA	ERG	NA	chr21:39761731-39781931	inner
CUST_24351_PI429285431	0.8979699	A	1.9312444	A	0.488599908992889	0	lncRNA	25903-1_{1..564}	lnc-TIGD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIGD3-1:1	chr11	 65142702	 65143265	+	lnc-TIGD3-1	lnc-TIGD3-1:1	ENSG00000255478.1	RP11-867O8.5	SLC25A45	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr11:65142663-65150142"	NA	inner
CUST_39330_PI429285431	0.92749536	A	0.9945694	A	0.954572023657154	0	lncRNA	40296-1_{1..1469}	n386385|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ixn.2||1.6104600|-0.2243688	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386385|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ixn.2||1.6104600|-0.2243688	chr5	 68935289	 68936757	-	NA	NA	NA	NA	LOC100652852	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80chr5:68949135-68950156"	NA	inter
LNCA_33_P3302756	1.6034201	A	1.3110151	A	1.2246801420014	0	lncRNA	XR_110517	XR_110517	XR_110517	100049615	Hs.551193	SKCG-1	sporadic kidney cancer gene 1	NA	THC2488624	NA	"PREDICTED: Homo sapiens sporadic kidney cancer gene 1 (SKCG-1), miscRNA [XR_110517]"	chr11:108830072-108830131	hs|11q22.3	Agilent_HUMAN_G3V2	XR_110517	XR_110517	chr11	108830072	108830131	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20874_PI429285431	1.2820942	A	0.8818258	A	1.31975341578883	0	lncRNA	22505-1_{1..478}	lnc-HMBOX1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMBOX1-4:2	chr8	 28997958	 28998435	+	lnc-HMBOX1-4	lnc-HMBOX1-4:2	ENSG00000254129.1	CTD-2647L4.1	KIF13B	"hg19_refFlat_KIF13B:range=chr8:28928021-291205515'pad=0,hg19_refFlat_KIF13B:range=chr8:28928021-291205515'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90chr8:28987958-29008246"	NA	inner
CUST_4930_PI429285431	8.924511	P	8.9300785	P	0.996148339817333	0	lncRNA	4873-1_{1..412}	"transcript_id ""ENST00000554181.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554181.1"" | genecode_v17"	chr14	 87402984	 87403395	+	ENSG00000259061.1	ENST00000554181.1	RP11-736P16.1	RP11-736P16.1-001	NA	NA	NA	inter
CUST_44602_PI429285431	3.6807728	P	3.77155	P	0.939016751472547	0	lncRNA	49178-1_{1..2988}	"gi|291621693|ref|NR_002713.3| Homo sapiens neuropeptide Y receptor Y6 (pseudogene) (NPY6R), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|291621693|ref|NR_002713.3| Homo sapiens neuropeptide Y receptor Y6 (pseudogene) (NPY6R), non-coding RNA"	Chr5	137136882	137139869	+	4888	NR_002713.3	NA	NA	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80"	NA	inter
LNCA_21_P0008507	2.4887147	A	2.8693118	A	0.768119616897122	0	lncRNA	TCONS_00022943	NA	NA	NA	NA	XLOC_010779	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010779), lincRNA [TCONS_00022943]"	chr14:27349659-27349718	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022943	TCONS_00022943	chr14	 27349659	 27349718	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38957_PI429285431	0.9054759	A	1.9037387	A	0.500602430272016	0	lncRNA	39942-1_{1..2913}	n385134|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tfl.2||-0.0292208|-0.3301515	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385134|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tfl.2||-0.0292208|-0.3301515	chr7	 37723378	 37726290	+	NA	NA	NA	NA	GPR141	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10chr7:37779996-37780913"	NA	inner
CUST_39198_PI429285431	4.4852276	P	4.41613	P	1.04906029532534	0	lncRNA	40173-1_{1..1104}	n385957|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009wkw.1||1.9008400|-0.3248737	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385957|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009wkw.1||1.9008400|-0.3248737	chr1	148930404	148931507	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_24_P833256	0.87970626	A	1.6189668	A	0.599046317588671	0	lncRNA	XR_132625	XR_132625	XR_132625	100506898	NA	LOC100506898	"mago-nashi homolog, proliferation-associated (Drosophila) pseudogene"	NA	NA	NA	"PREDICTED: Homo sapiens protein mago nashi homolog 2-like (LOC100506898), miscRNA [XR_132625]"	chr17:10619230-10619171	hs|17p13.1	Agilent_HUMAN_G3V2	XR_132625	XR_132625	chr17	 10619171	 10619230	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8762_PI429285431	6.5352993	P	6.2782516	P	1.19503071564817	0	lncRNA	10305-1_{1..461}	lnc-VAPB-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VAPB-1:6	chr20	 57097357	 57097817	+	lnc-VAPB-1	lnc-VAPB-1:6	ENSG00000231290	RP5-907D15.2	APCDD1L	NA	chr20:57087357-57089949	inter
LNCA_21_P0005510	0.8792114	A	0.8760306	A	1.00220719482808	0	lncRNA	TCONS_00013876	NA	NA	NA	NA	XLOC_006512	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006512), lincRNA [TCONS_00013876]"	chr7:82797565-82797506	hs|7q21.11	Agilent_HUMAN_G3V2	TCONS_00013876	TCONS_00013876	chr7	 82797506	 82797565	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47687_PI429285431	1.953891	A	2.6737535	A	0.607155306038468	0	lncRNA	51663-2_{3001..5752}	"gi|385137095|ref|NR_047634.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 64, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137095|ref|NR_047634.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 64, non-coding RNA"	ChrY	 15363259	 15366010	-	7404	NR_047634.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0006312	4.2092505	P	4.857886	P	0.63788333807705	0	lncRNA	TCONS_00016466	NA	NA	NA	NA	XLOC_007831	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007831), lincRNA [TCONS_00016466]"	chr9:115661403-115661344	hs|9q32	Agilent_HUMAN_G3V2	TCONS_00016466	TCONS_00016466	chr9	115661344	115661403	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012530	8.464735	P	9.047632	P	0.667621814244875	0	lncRNA	ENST00000449158	NA	NA	NA	NA	XLOC_l2_010097	NA	ENST00000449158	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010097), lincRNA [TCONS_l2_00020065]"	chr3:6763061-6763002	hs|3p26.1	Agilent_HUMAN_G3V2	ENST00000449158	ENST00000449158	chr3	  6763002	  6763061	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007183	3.0743723	P	3.8696628	P	0.576227133050154	0	lncRNA	TCONS_00019251	NA	NA	NA	NA	XLOC_009083	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009083), lincRNA [TCONS_00019251]"	chr11:19329706-19329765	hs|11p15.1	Agilent_HUMAN_G3V2	TCONS_00019251	TCONS_00019251	chr11	 19329706	 19329765	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008316	1.274452	A	0.8731747	A	1.32067666350333	0	lncRNA	TCONS_00022460	NA	NA	NA	NA	XLOC_010791	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010791), lincRNA [TCONS_00022460]"	chr14:32545182-32545241	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022460	TCONS_00022460	chr14	 32545182	 32545241	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34145_PI429285431	0.8849789	A	0.8784051	A	1.00456700807308	0	lncRNA	35663-2_{3001..3428}	n340984|AK125480|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3450|NULL|2.7592800|-0.1077770	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340984|AK125480|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3450|NULL|2.7592800|-0.1077770	chr11	 17798942	 17799369	+	NA	NA	NA	NA	KCNC1	NA	chr11:17785942-17804602	inner
CUST_6813_PI429285431	1.0672593	A	0.9187979	A	1.10838677334808	0	lncRNA	6761-1_{1..217}	"transcript_id ""ENST00000415269.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415269.1"" | genecode_v17"	chr21	 25415572	 25415788	+	ENSG00000226996.1	ENST00000415269.1	AP000477.3	AP000477.3-002	NA	NA	NA	inter
LNCA_21_P0009595	0.8814628	A	0.8754839	A	1.00415285698885	0	lncRNA	XR_108274	XR_108274	XR_108274	NA	NA	LOC645321	uncharacterized LOC645321	NA	THC2661011	NA	"PREDICTED: Homo sapiens hypothetical LOC645321, transcript variant 1 (LOC645321), miscRNA [XR_108274]"	chr18:76736897-76736838	hs|18q23	Agilent_HUMAN_G3V2	XR_108274	XR_108274	chr18	 76736838	 76736897	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002334	1.6428872	A	3.0182266	P	0.385462014144861	0	lncRNA	THC2686815	NA	NA	NA	NA	XLOC_001788	NA	NA	THC2686815	NA	"BROAD Institute lincRNA (XLOC_001788), lincRNA [TCONS_00003974]"	chr2:192563021-192563080	hs|2q32.3	Agilent_HUMAN_G3V2	THC2686815	THC2686815	chr2	192563021	192563080	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42834_PI429285431	0.8988186	A	0.9513526	A	0.964241213707503	0	lncRNA	45870-1_{1..132}	ENST00000363424 ncrna:snoRNA chromosome:GRCh37:10:73940616:73940747:1 gene:ENSG00000200294 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363424 ncrna:snoRNA chromosome:GRCh37:10:73940616:73940747:1 gene:ENSG00000200294 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	 73940616	 73940747	+	ENSG00000200294	ENST00000363424	NA	NA	ASCC1	NA	chr10:73930616-73950747	inter
LNCA_21_P0006703	0.87659913	A	1.4961382	A	0.650878845303954	0	lncRNA	ENST00000421481	NA	NA	NA	NA	XLOC_008608	NA	ENST00000421481	NA	NA	"BROAD Institute lincRNA (XLOC_008608), lincRNA [TCONS_00017868]"	chr10:110599062-110599121	hs|10q25.1	Agilent_HUMAN_G3V2	ENST00000421481	ENST00000421481	chr10	110599062	110599121	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007366	1.0159705	A	1.7768625	A	0.590131347185575	0	lncRNA	TCONS_00019684	NA	NA	NA	NA	XLOC_009484	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009484), lincRNA [TCONS_00019684]"	chr11:69160079-69160020	hs|11q13.3	Agilent_HUMAN_G3V2	TCONS_00019684	TCONS_00019684	chr11	 69160020	 69160079	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41139_PI429285431	1.1620115	A	1.4752489	A	0.80483368881278	0	lncRNA	41930-1_{1..98}	ENST00000384912 ncrna:miRNA chromosome:GRCh37:19:54172411:54172508:1 gene:ENSG00000207644 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384912 ncrna:miRNA chromosome:GRCh37:19:54172411:54172508:1 gene:ENSG00000207644 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54172411	 54172508	+	ENSG00000207644	ENST00000384912	NA	NA	NA	NA	NA	inter
CUST_9293_PI429285431	1.6257886	A	1.6223772	A	1.00236740016862	0	lncRNA	10799-1_{1..3000}	lnc-KIAA0226-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-KIAA0226-2:1	chr3	197376410	197379409	-	lnc-KIAA0226-2	lnc-KIAA0226-2:1	XLOC_003406	linc-BDH1-2	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40"	NA	inter
CUST_20537_PI429285431	3.4791071	P	4.0213447	P	0.686705012737335	0	lncRNA	22178-1_{1..480}	lnc-CXCL16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CXCL16-1:1	chr17	  4635545	  4636024	-	lnc-CXCL16-1	lnc-CXCL16-1:1	ENSG00000261898.1	RP11-314A20.5	MED11	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_MED11:range=chr17:4634785-46364825'pad=0,hg19_refFlat_MED11:range=chr17:4634785-46364825'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40chr17:4634723-4636902"	NA	inner
LNCA_21_P0004112	0.908384	A	0.9249003	A	0.988617054812931	0	lncRNA	ENST00000502861	NA	NA	NA	NA	XLOC_004756	NA	ENST00000502861	NA	NA	"BROAD Institute lincRNA (XLOC_004756), lincRNA [TCONS_00009620]"	chr5:24885538-24885479	hs|5p14.1	Agilent_HUMAN_G3V2	ENST00000502861	ENST00000502861	chr5	 24885479	 24885538	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006994	2.8979175	A	2.6166823	A	1.21523489333425	0	lncRNA	TCONS_00018506	NA	NA	NA	NA	XLOC_008814	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008814), lincRNA [TCONS_00018506]"	chr10:48988119-48988060	hs|10q11.22	Agilent_HUMAN_G3V2	TCONS_00018506	TCONS_00018506	chr10	 48988060	 48988119	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010407	1.9402218	A	3.6298852	P	0.309999243507183	0	lncRNA	TCONS_00029564	NA	NA	NA	NA	XLOC_014196	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014196), lincRNA [TCONS_00029564]"	chr22:27678594-27678653	hs|22q12.1	Agilent_HUMAN_G3V2	TCONS_00029564	TCONS_00029564	chr22	 27678594	 27678653	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8163_PI429285431	0.88894504	A	1.1027428	A	0.862264410569387	0	lncRNA	9766-1_{1..3000}	lnc-TNRC6A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNRC6A-1:1	chr16	 24718366	 24721365	+	lnc-TNRC6A-1	lnc-TNRC6A-1:1	ENSG00000249217	XLOC_011677	NA	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49145845-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0,hg19_refFlat_USP19:range=chr3:49146391-491565785'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-21.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70"	NA	inter
LNCA_21_P0006481	2.0172215	A	2.6296713	A	0.654085074857919	0	lncRNA	TCONS_00017138	NA	NA	NA	NA	XLOC_007927	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007927), lincRNA [TCONS_00017138]"	chrX:9936360-9936419	hs|Xp22.2	Agilent_HUMAN_G3V2	TCONS_00017138	TCONS_00017138	chrX	  9936360	  9936419	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014390	3.5931687	P	4.680495	P	0.470632775370123	0	lncRNA	ENST00000476474	XR_109563	XR_109563	NA	Hs.638415	LOC100507111	NA	ENST00000476474	THC2536932	NA	"PREDICTED: Homo sapiens hypothetical LOC100507111, transcript variant 2 (LOC100507111), miscRNA [XR_109563]"	chr19:12112600-12146390	hs|19p13.2	Agilent_HUMAN_G3V2	ENST00000476474	ENST00000476474	chr19	 12112600	 12146390	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008426	0.89561725	A	0.90799963	A	0.991453915394185	0	lncRNA	TCONS_00022727	NA	NA	NA	NA	XLOC_011006	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011006), lincRNA [TCONS_00022727]"	chr14:44862268-44862209	hs|14q21.2	Agilent_HUMAN_G3V2	TCONS_00022727	TCONS_00022727	chr14	 44862209	 44862268	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9462_PI429285431	3.671036	P	3.7747278	P	0.930648448999182	0	lncRNA	10968-1_{1..270}	lnc-C1D-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1D-4:1	chr2	 67149603	 67149872	-	lnc-C1D-4	lnc-C1D-4:1	XLOC_002141	linc-SPRED2-8	NA	NA	NA	inter
CUST_12428_PI429285431	1.6758959	A	1.3300902	A	1.27086052019454	0	lncRNA	14041-1_{1..608}	lnc-KIDINS220-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIDINS220-6:2	chr2	  8502308	  8502915	-	lnc-KIDINS220-6	lnc-KIDINS220-6:2	XLOC_001974	linc-CMPK2-2	NA	NA	NA	inter
CUST_39483_PI429285431	11.628473	P	11.264157	P	1.28727117323384	0	lncRNA	40429-1_{1..1388}	n387141|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010yxz.1||2.5175600|-0.3332359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387141|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010yxz.1||2.5175600|-0.3332359	chr2	114368815	114370202	-	NA	NA	NA	NA	RABL2A	"hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80chr2:114384817-114394715"	NA	inter
CUST_42860_PI429285431	10.436708	P	10.391773	P	1.0316366983098	0	lncRNA	45911-1_{1..133}	ENST00000384437 ncrna:snoRNA chromosome:GRCh37:19:17973397:17973529:1 gene:ENSG00000207166 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384437 ncrna:snoRNA chromosome:GRCh37:19:17973397:17973529:1 gene:ENSG00000207166 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	 17973397	 17973529	+	ENSG00000207166	ENST00000384437	NA	NA	SLC5A5	NA	chr19:17982782-17983529	inner
CUST_30774_PI429285431	3.4209707	P	3.4626281	P	0.971538181482513	0	lncRNA	32560-1_{1..346}	n336614|Z36835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327143|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327143|0.7447300|-0.0446071	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336614|Z36835|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000327143|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000327143|0.7447300|-0.0446071	chr8	  8560645	  8560990	+	NA	NA	NA	NA	CLDN23	NA	chr8:8559666-8561617	inner
CUST_23729_PI429285431	1.1314832	A	1.9978958	A	0.548509076858923	0	lncRNA	25293-1_{1..531}	lnc-SPARCL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPARCL1-1:1	chr4	 88655016	 88655546	-	lnc-SPARCL1-1	lnc-SPARCL1-1:1	ENSG00000249001.1	RP11-742B18.1	NA	NA	NA	inter
LNCA_21_P0007961	0.9265044	A	2.1987498	A	0.414014901439089	0	lncRNA	ENST00000437113	NA	BC041830	NA	Hs.639387	XLOC_010479	NA	ENST00000437113	THC2529523	NA	"BROAD Institute lincRNA (XLOC_010479), lincRNA [TCONS_00021588]"	chr13:100232462-100232521	hs|13q32.3	Agilent_HUMAN_G3V2	ENST00000437113	ENST00000437113	chr13	100232462	100232521	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20850_PI429285431	5.953717	P	6.264821	P	0.806024725246991	0	lncRNA	22481-1_{1..370}	lnc-AKR1C1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AKR1C1-1:1	chr10	  5034141	  5034510	+	lnc-AKR1C1-1	lnc-AKR1C1-1:1	ENSG00000226198.1	RP11-69D4.5	AKR1C2	"hg19_refFlat_AKR1C1:range=chr10:5005637-50199345'pad=0,hg19_refFlat_AKR1C1:range=chr10:5005637-50199345'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_AKR1C2:range=chr10:5032188-50460275'pad=0,hg19_refFlat_AKR1C2:range=chr10:5032188-50460275'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00chr10:5031965-5044174"	NA	inner
LNCA_21_P0001914	0.87961686	A	0.87332964	A	1.00436747857205	0	lncRNA	ENST00000421696	NA	NA	NA	NA	XLOC_001678	NA	ENST00000421696	NA	NA	"BROAD Institute lincRNA (XLOC_001678), lincRNA [TCONS_00003006]"	chr2:132722998-132723057	hs|2q21.2	Agilent_HUMAN_G3V2	ENST00000421696	ENST00000421696	chr2	132722998	132723057	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005879	0.88025755	A	0.8731945	A	1.00490773687635	0	lncRNA	TCONS_00015119	NA	NA	NA	NA	XLOC_007173	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007173), lincRNA [TCONS_00015119]"	chr8:103895713-103895654	hs|8q22.3	Agilent_HUMAN_G3V2	TCONS_00015119	TCONS_00015119	chr8	103895654	103895713	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006507	3.0094304	P	2.4975944	A	1.42586362148185	0	lncRNA	TCONS_00017209	NA	NA	NA	NA	XLOC_008025	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008025), lincRNA [TCONS_00017209]"	chrX:100672726-100672785	hs|Xq22.1	Agilent_HUMAN_G3V2	TCONS_00017209	TCONS_00017209	chrX	100672726	100672785	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42431_PI429285431	5.4240026	P	5.944355	P	0.697201510400845	0	lncRNA	45152-1_{1..129}	ENST00000363193 ncrna:snoRNA chromosome:GRCh37:17:76396016:76396144:1 gene:ENSG00000200063 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363193 ncrna:snoRNA chromosome:GRCh37:17:76396016:76396144:1 gene:ENSG00000200063 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 76396016	 76396144	+	ENSG00000200063	ENST00000363193	NA	NA	PGS1	NA	chr17:76386016-76406144	inner
CUST_31594_PI429285431	2.434946	A	2.5399685	A	0.929790441663564	0	lncRNA	33351-1_{1..3000}	n338102|AK126296|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|490|NULL|0.4416620|-0.3569114	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338102|AK126296|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|490|NULL|0.4416620|-0.3569114	chr1	100496121	100499120	+	NA	NA	NA	NA	HIAT1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40chr1:100503789-100511188"	NA	inter
CUST_27164_PI429285431	4.245573	P	4.1189165	P	1.09176057091079	0	lncRNA	28703-1_{1..654}	n324292|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000105437|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000105437|-1.4207500|-0.3198903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324292|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000105437|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000105437|-1.4207500|-0.3198903	chr6	169428553	169429206	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11806_PI429285431	0.90682214	A	1.2905551	A	0.766451835694478	0	lncRNA	13387-1_{1..848}	lnc-UGT8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UGT8-1:1	chr4	115610865	115611712	+	lnc-UGT8-1	lnc-UGT8-1:1	XLOC_003653	linc-NDST3-8	NA	NA	NA	inter
CUST_12213_PI429285431	0.9009206	A	0.91466117	A	0.990520974543674	0	lncRNA	13816-1_{1..1077}	lnc-TRIM55-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIM55-1:6	chr8	 67108960	 67110036	+	lnc-TRIM55-1	lnc-TRIM55-1:6	XLOC_006827	linc-RRS1	NA	NA	NA	inter
CUST_10850_PI429285431	5.214491	P	5.0613728	P	1.11197025750472	0	lncRNA	12388-1_{1..777}	lnc-NPY5R-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NPY5R-1:1	chr4	164040537	164041313	+	lnc-NPY5R-1	lnc-NPY5R-1:1	XLOC_003765	linc-NPY5R-1	NAF1	NA	chr4:164047860-164051117	inter
CUST_27107_PI429285431	0.9157765	A	0.92763495	A	0.991814037782437	0	lncRNA	28640-1_{1..527}	n324219|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326774|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326774|-1.2010600|-0.2697323	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324219|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326774|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326774|-1.2010600|-0.2697323	chr7	 24202805	 24203331	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48888_PI429285431	7.4200354	P	8.060041	P	0.641710457897768	0	lncRNA	52727-1_{1..253}	hg19_lincRNAsTranscripts_TCONS_l2_00019376 range=chr3:90255221-90257443 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019376 range=chr3:90255221-90257443 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 90255221	 90255473	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24141_PI429285431	0.912093	A	0.91427577	A	0.998488163107236	0	lncRNA	25693-1_{1..500}	lnc-CHAC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHAC1-2:1	chr15	 41296731	 41297230	+	lnc-CHAC1-2	lnc-CHAC1-2:1	ENSG00000259617.1	RP11-540O11.6	INO80	NA	chr15:41286731-41307063	inner
LNCA_21_P0002039	0.9207625	A	0.96891606	A	0.967173378509063	0	lncRNA	TCONS_00003259	NA	NA	NA	NA	XLOC_002058	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002058), lincRNA [TCONS_00003259]"	chr2:42104307-42104248	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00003259	TCONS_00003259	chr2	 42104248	 42104307	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47341_PI429285431	4.5916243	P	4.8815193	P	0.817961588007161	0	lncRNA	51394-1_{1..738}	"gi|310124035|ref|XR_109593.1| PREDICTED: Homo sapiens chromosome 20 open reading frame 181 (C20orf181), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310124035|ref|XR_109593.1| PREDICTED: Homo sapiens chromosome 20 open reading frame 181 (C20orf181), misc_RNA"	Chr20	 62463962	 62464699	-	100128998	XR_109593.1	NA	NA	NA	NA	NA	inter
CUST_5045_PI429285431	4.392598	P	4.6255245	P	0.850907078984722	0	lncRNA	4986-1_{1..3000}	"transcript_id ""ENST00000554735.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554735.1"" | genecode_v17"	chr14	102023641	102026640	-	ENSG00000258498.1	ENST00000554735.1	DIO3OS	DIO3OS-006	DIO3	NA	chr14:102027688-102029789	inter
CUST_16362_PI429285431	0.9172374	A	2.1361938	A	0.429593360111605	0	lncRNA	18060-1_{1..1125}	lnc-ERGIC1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERGIC1-2:2	chr5	172204500	172205624	+	lnc-ERGIC1-2	lnc-ERGIC1-2:2	XLOC_004635	linc-ERGIC1-2	DUSP1	NA	chr5:172195093-172198203	inter
CUST_12911_PI429285431	2.8770907	A	2.5375433	A	1.2653595651001	0	lncRNA	14540-1_{1..1166}	lnc-EPB41-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EPB41-1:1	chr1	 29461193	 29462358	+	lnc-EPB41-1	lnc-EPB41-1:1	XLOC_000111	linc-PTPRU-2	NA	"hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-14.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0,hg19_refFlat_RPE:range=chr2:210880699-2108845155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20"	NA	inter
LNCA_21_P0005975	1.5837041	A	0.9988903	A	1.4998454007391	0	lncRNA	TCONS_00015498	NA	NA	NA	NA	XLOC_007214	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007214), lincRNA [TCONS_00015498]"	chr8:128128719-128128660	hs|8q24.21	Agilent_HUMAN_G3V2	TCONS_00015498	TCONS_00015498	chr8	128128660	128128719	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006004	2.124682	A	2.5356982	A	0.752093430401587	0	lncRNA	ENST00000449144	NA	NA	NA	NA	XLOC_007325	NA	ENST00000449144	NA	NA	"BROAD Institute lincRNA (XLOC_007325), lincRNA [TCONS_00015660]"	chr9:33722480-33722539	hs|9p13.3	Agilent_HUMAN_G3V2	ENST00000449144	ENST00000449144	chr9	 33722480	 33722539	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009746	0.8828551	A	1.219071	A	0.792116261478898	0	lncRNA	TCONS_00027709	NA	NA	NA	NA	XLOC_013272	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013272), lincRNA [TCONS_00027709]"	chr19:23199145-23199086	hs|19p12	Agilent_HUMAN_G3V2	TCONS_00027709	TCONS_00027709	chr19	 23199086	 23199145	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9033_PI429285431	5.310181	P	5.4840255	P	0.886477242451531	0	lncRNA	10559-2_{3001..3583}	lnc-HIATL1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HIATL1-7:1	chr9	 97797314	 97797896	+	lnc-HIATL1-7	lnc-HIATL1-7:1	ENSG00000251631	ENST00000513360	C9orf3	NA	chr9:97784314-97805781	inner
LNCA_21_P0004583	0.8816527	A	0.8837713	A	0.998532576104155	0	lncRNA	TCONS_00011089	NA	NA	NA	NA	XLOC_005087	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005087), lincRNA [TCONS_00011089]"	chr5:173136071-173136012	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_00011089	TCONS_00011089	chr5	173136012	173136071	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8160_PI429285431	2.1542344	A	2.0292964	A	1.09046086896591	0	lncRNA	9763-1_{1..2931}	lnc-PPP1R3G-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PPP1R3G-1:1	chr6	  5237941	  5240871	+	lnc-PPP1R3G-1	lnc-PPP1R3G-1:1	ENSG00000251561	ENST00000512904	LYRM4	NA	chr6:5227941-5250729	inner
LNCA_21_P0009073	6.580185	P	6.6797476	P	0.933315913769778	0	lncRNA	TCONS_00024743	NA	NA	NA	NA	XLOC_012025	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012025), lincRNA [TCONS_00024743]"	chr16:82578814-82578755	hs|16q23.3	Agilent_HUMAN_G3V2	TCONS_00024743	TCONS_00024743	chr16	 82578755	 82578814	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13663_PI429285431	0.92223775	A	1.9307399	A	0.497062044891593	0	lncRNA	15301-1_{1..1402}	lnc-SNRPB2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SNRPB2-2:1	chr20	 16559524	 16560925	+	lnc-SNRPB2-2	lnc-SNRPB2-2:1	XLOC_013466	linc-SNRPB2-2	KIF16B	"hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60chr20:16549524-16554079"	NA	inter
CUST_19089_PI429285431	7.7982163	P	7.787304	P	1.00759250800002	0	lncRNA	20778-1_{1..380}	lnc-EVX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-EVX1-1:1	chr7	 27289767	 27290146	+	lnc-EVX1-1	lnc-EVX1-1:1	ENSG00000253324	RP1-170O19.19	EVX1	NA	chr7:27282164-27286192	inter
CUST_22475_PI429285431	1.7047304	A	2.123633	A	0.747993376405872	0	lncRNA	24062-1_{1..480}	lnc-SNRPD3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNRPD3-2:1	chr22	 24914120	 24914599	+	lnc-SNRPD3-2	lnc-SNRPD3-2:1	ENSG00000228923.1	AP000355.2	UPB1	NA	chr22:24904120-24922553	inner
CUST_34087_PI429285431	6.53831	P	6.594409	P	0.961861447956535	0	lncRNA	35616-1_{1..3000}	n340912|BX648922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3377|NULL|-0.9927080|-0.1481109	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340912|BX648922|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3377|NULL|-0.9927080|-0.1481109	chr17	 77889050	 77892049	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4085_PI429285431	3.2688324	P	3.8041437	P	0.690009772590232	0	lncRNA	4047-1_{1..3000}	"transcript_id ""ENST00000499809.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000499809.1"" | genecode_v17"	chr11	115624966	115627965	-	ENSG00000246100.3	ENST00000499809.1	CTC-774J1.2	CTC-774J1.2-001	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50"	NA	inter
LNCA_21_P0001751	0.8806179	A	0.8733117	A	1.00507711703024	0	lncRNA	TCONS_00002568	NA	NA	NA	NA	XLOC_001173	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001173), lincRNA [TCONS_00002568]"	chr1:207058808-207058749	hs|1q32.1	Agilent_HUMAN_G3V2	TCONS_00002568	TCONS_00002568	chr1	207058749	207058808	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_24_P100190	9.397122	P	9.453375	P	0.961758779857455	0	lncRNA	XR_109683	XR_109683	XR_109683	   246704	Hs.171428	LINC00315	long intergenic non-protein coding RNA 315	ENST00000441947	THC2485435	NA	"PREDICTED: Homo sapiens non-protein coding RNA 315 (NCRNA00315), miscRNA [XR_109683]"	chr21:46723274-46723215	hs|21q22.3	Agilent_HUMAN_G3V2	XR_109683	XR_109683	chr21	 46723215	 46723274	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32004_PI429285431	1.5244057	A	0.9157676	A	1.52481910445867	0	lncRNA	33726-1_{1..2872}	n338568|BC040195|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|974|NULL|4.2840300|-0.3216516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n338568|BC040195|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|974|NULL|4.2840300|-0.3216516	chr1	234663636	234666507	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003695	0.8817111	A	0.87463117	A	1.00491949469166	0	lncRNA	TCONS_00008372	NA	NA	NA	NA	XLOC_003828	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003828), lincRNA [TCONS_00008372]"	chr4:188351476-188351535	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008372	TCONS_00008372	chr4	188351476	188351535	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004740	3.676178	P	4.8208036	P	0.452307053701365	0	lncRNA	ENST00000416595	NA	NA	NA	NA	XLOC_005642	NA	ENST00000416595	NA	NA	"BROAD Institute lincRNA (XLOC_005642), lincRNA [TCONS_00011469]"	chr6:25054745-25054686	hs|6p22.3	Agilent_HUMAN_G3V2	ENST00000416595	ENST00000416595	chr6	 25054686	 25054745	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42711_PI429285431	9.536591	P	9.863548	P	0.797216237478487	0	lncRNA	45643-1_{1..135}	ENST00000391143 ncrna:snoRNA chromosome:GRCh37:16:68223190:68223324:1 gene:ENSG00000212445 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391143 ncrna:snoRNA chromosome:GRCh37:16:68223190:68223324:1 gene:ENSG00000212445 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 68223190	 68223324	+	ENSG00000212445	ENST00000391143	NA	NA	NFATC3	NA	chr16:68213190-68233324	inner
CUST_44746_PI429285431	4.0387106	P	4.2373333	P	0.871382050040771	0	lncRNA	49294-2_{3001..5745}	"gi|378925610|ref|NR_046399.1| Homo sapiens ring finger protein 8, E3 ubiquitin protein ligase (RNF8), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378925610|ref|NR_046399.1| Homo sapiens ring finger protein 8, E3 ubiquitin protein ligase (RNF8), transcript variant 3, non-coding RNA"	Chr6	 37324748	 37327492	+	9025	NR_046399.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70"	NA	inter
CUST_16497_PI429285431	1.336097	A	0.9126532	A	1.34112508331178	0	lncRNA	18194-1_{1..1145}	lnc-TWIST1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TWIST1-1:1	chr7	 19095674	 19096818	-	lnc-TWIST1-1	lnc-TWIST1-1:1	XLOC_006364	linc-PRPS1L1	NA	NA	NA	inter
CUST_16854_PI429285431	1.3067613	A	1.1176286	A	1.14007813297673	0	lncRNA	18561-1_{1..3000}	lnc-WDR60-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR60-4:2	chr7	158814364	158817363	+	lnc-WDR60-4	lnc-WDR60-4:2	XLOC_006322	ENSG00000231419	VIPR2	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90chr7:158820866-158825371"	NA	inter
CUST_3905_PI429285431	0.88650644	A	0.883368	A	1.00217776873849	0	lncRNA	3874-1_{1..547}	"transcript_id ""ENST00000534666.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534666.1"" | genecode_v17"	chr11	 33826314	 33826860	+	ENSG00000255169.1	ENST00000534666.1	RP11-646J21.3	RP11-646J21.3-001	NA	NA	NA	inter
CUST_1949_PI429285431	2.1589415	A	2.4040725	A	0.843739179209826	0	lncRNA	1942-1_{1..448}	"transcript_id ""ENST00000504785.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000504785.1"" | genecode_v17"	chr4	153143620	153144067	-	ENSG00000251377.1	ENST00000504785.1	RP11-18H21.3	RP11-18H21.3-002	NA	NA	NA	inter
LNCA_21_P0005702	1.6208079	A	0.9472517	A	1.59499975236329	0	lncRNA	TCONS_00014723	NA	NA	NA	NA	XLOC_006813	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006813), lincRNA [TCONS_00014723]"	chr8:60532183-60532242	hs|8q12.1	Agilent_HUMAN_G3V2	TCONS_00014723	TCONS_00014723	chr8	 60532183	 60532242	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010816	0.921195	A	0.9694405	A	0.967111744494559	0	lncRNA	TCONS_l2_00002973	NA	NA	NA	NA	XLOC_l2_001548	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001548), lincRNA [TCONS_l2_00002973]"	chr10:37551428-37553477	hs|10p11.21	Agilent_HUMAN_G3V2	TCONS_l2_00002973	TCONS_l2_00002973	chr10	 37551428	 37553477	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005008	1.4909935	A	0.96707666	A	1.43785364952625	0	lncRNA	TCONS_00012103	NA	NA	NA	NA	XLOC_005633	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005633), lincRNA [TCONS_00012103]"	chr6:19708044-19707985	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00012103	TCONS_00012103	chr6	 19707985	 19708044	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34191_PI429285431	3.5900235	P	3.858255	P	0.830336774595272	0	lncRNA	35706-1_{1..648}	n341041|AF086106|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3507|NULL|-1.2563900|-0.3361825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341041|AF086106|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3507|NULL|-1.2563900|-0.3361825	chr11	 61721450	 61722097	-	NA	NA	NA	NA	FTH1	"hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90chr11:61731757-61735132"	NA	inner
CUST_19925_PI429285431	4.3850546	P	3.7625914	P	1.53950142203666	0	lncRNA	21580-1_{1..824}	lnc-AF127577.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AF127577.1-2:1	chr21	 16364555	 16365378	+	lnc-AF127577.1-2	lnc-AF127577.1-2:1	ENSG00000231201.1	AF127577.11	NRIP1	NA	chr21:16354555-16375175	inner
CUST_25144_PI429285431	0.8933946	A	0.89835036	A	0.996570822035423	0	lncRNA	26682-1_{1..394}	lnc-RNF20-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNF20-1:1	chr9	104243645	104244038	+	lnc-RNF20-1	lnc-RNF20-1:1	ENSG00000225376.1	RP11-490D19.6	C9orf125	NA	chr9:104237608-104249475	inner
CUST_13554_PI429285431	3.41158	P	3.5870204	P	0.885497169187598	0	lncRNA	15195-1_{1..320}	lnc-CRYAA-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYAA-3:1	chr21	 44821458	 44821777	+	lnc-CRYAA-3	lnc-CRYAA-3:1	XLOC_013962	linc-RRP1B-4	NA	NA	NA	inter
LNCA_21_P0005507	2.9915292	P	3.3812957	P	0.763253126900784	0	lncRNA	TCONS_00013864	NA	NA	NA	NA	XLOC_006495	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006495), lincRNA [TCONS_00013864]"	chr7:73695396-73695337	hs|7q11.23	Agilent_HUMAN_G3V2	TCONS_00013864	TCONS_00013864	chr7	 73695337	 73695396	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45058_PI429285431	4.4620786	P	2.3106873	A	4.44256012000197	0	lncRNA	49549-1_{1..3000}	"gi|110671315|ref|NR_003104.1| Homo sapiens protection of telomeres 1 homolog (S. pombe) (POT1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|110671315|ref|NR_003104.1| Homo sapiens protection of telomeres 1 homolog (S. pombe) (POT1), transcript variant 5, non-coding RNA"	Chr7	124462440	124465439	-	25913	NR_003104.1	NA	NA	NA	NA	NA	inter
CUST_49393_PI429285431	0.91543245	A	0.92097133	A	0.996168101476911	0	lncRNA	53205-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00022568 range=chr5:147618054-147646815 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022568 range=chr5:147618054-147646815 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	147621054	147624053	+	NA	NA	NA	NA	SPINK13	"hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0,hg19_refFlat_INO80C:range=chr18:33048575-330778385'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40chr5:147648423-147656815"	NA	inter
CUST_42486_PI429285431	11.689982	P	11.405369	P	1.21808347144152	0	lncRNA	45246-1_{1..84}	ENST00000363214 ncrna:snoRNA chromosome:GRCh37:16:89627842:89627925:1 gene:ENSG00000200084 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363214 ncrna:snoRNA chromosome:GRCh37:16:89627842:89627925:1 gene:ENSG00000200084 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 89627842	 89627925	+	ENSG00000200084	ENST00000363214	NA	NA	SPG7	NA	chr16:89617842-89624174	inter
CUST_8661_PI429285431	2.8192961	A	2.3057177	A	1.42758673383541	0	lncRNA	10212-1_{1..1899}	lnc-ZNF286A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF286A-2:1	chr17	 15381621	 15383519	+	lnc-ZNF286A-2	lnc-ZNF286A-2:1	ENSG00000250010	ENST00000512580	FAM18B2-CDRT4	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.20;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-44.50;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0,hg19_refFlat_CEACAM1:range=chr19:43013261-430325265'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80chr17:15371621-15392906"	NA	inter
CUST_14897_PI429285431	4.3546686	P	4.412316	P	0.96082966558048	0	lncRNA	16561-1_{1..3000}	lnc-AC110619.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC110619.2.1-1:1	chr2	241327068	241330067	-	lnc-AC110619.2.1-1	lnc-AC110619.2.1-1:1	XLOC_002543	linc-OTOS-1	NA	NA	NA	inter
CUST_11538_PI429285431	1.9940947	A	2.115706	A	0.9191604961408	0	lncRNA	13109-1_{1..210}	lnc-CNTN1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CNTN1-1:4	chr12	 40925011	 40925220	+	lnc-CNTN1-1	lnc-CNTN1-1:4	XLOC_009713	linc-CNTN1	NA	NA	NA	inter
CUST_15017_PI429285431	4.1428356	P	4.8795285	P	0.600113421034401	0	lncRNA	16679-1_{1..455}	lnc-RXRA-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RXRA-3:1	chr9	137436766	137437220	+	lnc-RXRA-3	lnc-RXRA-3:1	XLOC_007599	linc-COL5A1-4	NA	NA	NA	inter
LNCA_21_P0005837	0.87955165	A	0.87667346	A	1.00199700063867	0	lncRNA	TCONS_00015016	NA	NA	NA	NA	XLOC_007090	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007090), lincRNA [TCONS_00015016]"	chr8:59171231-59171172	hs|8q12.1	Agilent_HUMAN_G3V2	TCONS_00015016	TCONS_00015016	chr8	 59171172	 59171231	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002744	2.6474986	A	3.927072	P	0.411917293165073	0	lncRNA	BC044922	NA	BC044922	NA	Hs.434396	XLOC_002672	NA	NA	THC2501334	NA	"BROAD Institute lincRNA (XLOC_002672), lincRNA [TCONS_00005522]"	chr3:57681709-57681768	hs|3p14.3	Agilent_HUMAN_G3V2	BC044922	BC044922	chr3	 57681709	 57681768	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45326_PI429285431	0.9631713	A	1.1750156	A	0.863432737811418	0	lncRNA	49768-1_{1..3000}	"gi|213512396|ref|NR_024481.1| Homo sapiens family with sequence similarity 205, member B (FAM205B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|213512396|ref|NR_024481.1| Homo sapiens family with sequence similarity 205, member B (FAM205B), non-coding RNA"	Chr9	 34830264	 34833263	-	389715	NR_024481.1	NA	NA	NA	NA	NA	inter
CUST_48611_PI429285431	0.8818926	A	1.6069244	A	0.604983709363151	0	lncRNA	52458-1_{1..827}	hg19_lincRNAsTranscripts_TCONS_l2_00014610 range=chr2:63981081-64067893 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014610 range=chr2:63981081-64067893 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 63981081	 63981907	-	NA	NA	NA	NA	UGP2	NA	chr2:64068098-64077893	inter
CUST_9199_PI429285431	4.5151978	P	4.9895773	P	0.719776297661852	0	lncRNA	10711-1_{1..431}	lnc-SULF1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SULF1-3:3	chr8	 70762372	 70762802	+	lnc-SULF1-3	lnc-SULF1-3:3	ENSG00000246528	RP11-159H10.3	NA	NA	NA	inter
CUST_51248_PI429285431	2.3274863	A	1.1043007	A	2.33461652833803	0	lncRNA	54860-2_{3001..4800}	hg19_lincRNAsTranscripts_TCONS_l2_00008473 range=chr15:28881633-28930461 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008473 range=chr15:28881633-28930461 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 28884633	 28886432	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007027	1.2109498	A	1.1616964	A	1.0347293090316	0	lncRNA	TCONS_00018622	NA	NA	NA	NA	XLOC_008975	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008975), lincRNA [TCONS_00018622]"	chr10:124133410-124130703	hs|10q26.13	Agilent_HUMAN_G3V2	TCONS_00018622	TCONS_00018622	chr10	124130703	124133410	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1_PI429201921	8.616038	P	8.144097	P	1.38697424671151	0	lncRNA	1-1_{1..340}	TC06003570.hg.1	TCONS_l2_00025363-XLOC_l2_012943 // Broad TUCP // linc-ZFP57-2 chr6:-:29718584-29718925 // chr6 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6:-:29718584-29718925	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00025363-XLOC_l2_012943	linc-ZFP57-2	chr6	 29718584	 29718925	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00321983	3.8516488	P	3.9773197	P	0.916577705711884	0	lncRNA	AK309717	NA	AK309717	NA	Hs.639087	XLOC_012826	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012826), lincRNA [TCONS_00026204]"	chr18:37421285-37421226	hs|18q12.3	Agilent_HUMAN_G3V2	AK309717	AK309717	chr18	 37421226	 37421285	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014303	0.9211338	A	1.1884602	A	0.830857864352907	0	lncRNA	XR_109228	XR_109228	XR_109228	NA	NA	LOC100507325	uncharacterized LOC100507325	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507325 (LOC100507325), miscRNA [XR_109228]"	chr15:96936438-96936379	hs|15q26.2	Agilent_HUMAN_G3V2	XR_109228	XR_109228	chr15	 96936379	 96936438	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001750	1.4459482	A	1.6190424	A	0.886938391094227	0	lncRNA	TCONS_00002545	NA	NA	NA	NA	XLOC_001134	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001134), lincRNA [TCONS_00002545]"	chr1:192921948-192921889	hs|1q31.2	Agilent_HUMAN_G3V2	TCONS_00002545	TCONS_00002545	chr1	192921889	192921948	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28917_PI429285431	0.91532284	A	0.92262876	A	0.994948722975595	0	lncRNA	30634-1_{1..519}	n326342|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097974|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097974|-1.1905700|-0.3687666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326342|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000097974|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000097974|-1.1905700|-0.3687666	chr1	166700075	166700593	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30482_PI429285431	13.426342	P	13.307989	P	1.08549493932895	0	lncRNA	32262-1_{1..525}	n335631|CR603885|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000283080|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000283080|-1.0169200|-0.1252318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335631|CR603885|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000283080|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000283080|-1.0169200|-0.1252318	chr7	  2419855	  2420379	+	NA	NA	NA	NA	EIF3B	NA	chr7:2409855-2420380	inner
CUST_3730_PI429285431	3.895568	P	2.7938755	A	2.14606310622645	0	lncRNA	3699-1_{1..609}	"transcript_id ""ENST00000598318.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598318.1"" | genecode_v17"	chr10	 75880013	 75880621	-	ENSG00000267957.1	ENST00000598318.1	RP11-178G16.4	RP11-178G16.4-001	VCL	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-24.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00chr10:75870013-75879918"	NA	inner
CUST_39859_PI429285431	5.985529	P	5.5221424	P	1.37877457466425	0	lncRNA	40758-1_{1..883}	n406510|NR_024016|lncRNA|Homosapiens||RefGeneNoncode|NR_024016||-0.7301680|-0.2864408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406510|NR_024016|lncRNA|Homosapiens||RefGeneNoncode|NR_024016||-0.7301680|-0.2864408	chr3	157261132	157262014	+	NA	NA	NA	NA	C3orf55	NA	chr3:157261159-157297701	inner
CUST_46942_PI429285431	1.1976428	A	1.6070417	A	0.752937020149864	0	lncRNA	51050-1_{1..923}	"gi|338753405|ref|NR_040019.1| Homo sapiens uncharacterized LOC100507410 (LOC100507410), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|338753405|ref|NR_040019.1| Homo sapiens uncharacterized LOC100507410 (LOC100507410), transcript variant 2, non-coding RNA"	Chr17	 77015291	 77016213	-	100507410	NR_040019.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002170	0.90663415	A	0.9224803	A	0.989076386549138	0	lncRNA	THC2741784	NA	NA	NA	NA	XLOC_001349	NA	NA	THC2741784	NA	"BROAD Institute lincRNA (XLOC_001349), lincRNA [TCONS_00003574]"	chr2:011489349-011489408	hs|2p25.1	Agilent_HUMAN_G3V2	THC2741784	THC2741784	chr2	 11489349	 11489408	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21066_PI429285431	0.90457094	A	0.91457	A	0.993093142494954	0	lncRNA	22693-1_{1..773}	lnc-WASH4P-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-WASH4P-1:1	chr16	    84847	    85619	-	lnc-WASH4P-1	lnc-WASH4P-1:1	ENSG00000260803.1	Z84812.4	NA	NA	NA	inter
LNCA_21_P0010223	1.5118629	A	0.90858924	A	1.51915982683545	0	lncRNA	TCONS_00028974	NA	NA	NA	NA	XLOC_013881	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013881), lincRNA [TCONS_00028974]"	chr21:24744275-24744334	hs|21q21.2	Agilent_HUMAN_G3V2	TCONS_00028974	TCONS_00028974	chr21	 24744275	 24744334	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35699_PI429285431	0.8953956	A	1.2461666	A	0.784164915246895	0	lncRNA	37119-1_{1..2116}	n342863|BC045678|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5367|NULL|-0.2259330|-0.3643265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342863|BC045678|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5367|NULL|-0.2259330|-0.3643265	chr9	 66744024	 66746139	-	NA	NA	NA	NA	NA	"hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70"	NA	inter
CUST_26356_PI429285431	0.9072757	A	1.6408696	A	0.601403888043562	0	lncRNA	27863-1_{1..337}	lnc-HSPH1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSPH1-3:1	chr13	 31551697	 31552033	-	lnc-HSPH1-3	lnc-HSPH1-3:1	ENSG00000238185.1	RP11-252M21.6	C13orf26	"hg19_refFlat_TEX26:range=chr13:31506853-315490445'pad=0,hg19_refFlat_TEX26:range=chr13:31506853-315490445'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60chr13:31541697-31549153"	NA	inter
CUST_49436_PI429285431	4.253818	P	4.060416	P	1.14345690976848	0	lncRNA	53238-1_{1..2247}	hg19_lincRNAsTranscripts_TCONS_l2_00022669 range=chr5:177477770-177481723 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022669 range=chr5:177477770-177481723 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	177477770	177480016	+	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	inter
CUST_21840_PI429285431	3.6900012	P	4.101107	P	0.752046722346931	0	lncRNA	23450-1_{1..564}	lnc-AGPAT6-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGPAT6-1:3	chr8	 41521605	 41522168	+	lnc-AGPAT6-1	lnc-AGPAT6-1:3	ENSG00000253389.2	RP11-930P14.1	ANK1	"hg19_refFlat_ANK1:range=chr8:41518984-415225415'pad=0,hg19_refFlat_ANK1:range=chr8:41518984-415225415'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90;hg19_refFlat_ANK1:range=chr8:41518984-416550565'pad=0,hg19_refFlat_ANK1:range=chr8:41518984-416550565'pad=0 3'pad=0 strand=- repeatMasking=none,-96.90chr8:41511605-41531766"	NA	inner
CUST_8032_PI429285431	0.8947291	A	1.2745743	A	0.768520047793805	0	lncRNA	9640-2_{3001..3425}	lnc-SLC19A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SLC19A1-1:2	chr21	 46846685	 46847109	-	lnc-SLC19A1-1	lnc-SLC19A1-1:2	ENSG00000183535	NCRNA00175	COL18A1	NA	chr21:46833685-46854955	inner
CUST_16036_PI429285431	5.4796743	P	5.7183013	P	0.847551535899433	0	lncRNA	17734-1_{1..1851}	lnc-GUF1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GUF1-3:2	chr4	 44021772	 44023622	+	lnc-GUF1-3	lnc-GUF1-3:2	XLOC_003528	linc-GUF1-1	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70"	NA	inter
CUST_33785_PI429285431	5.7288365	P	5.736838	P	0.994469134702462	0	lncRNA	35338-1_{1..263}	n340573|U00949|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3035|NULL|-1.2454100|-0.3142801	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340573|U00949|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3035|NULL|-1.2454100|-0.3142801	chr17	 26460854	 26461116	-	NA	NA	NA	NA	NLK	NA	chr17:26450854-26471063	inner
LNCA_33_P3391316	2.1908612	A	2.8378203	A	0.638624984180349	0	lncRNA	XR_109656	XR_109656	XR_109656	   441956	Hs.535148	LOC441956	uncharacterized LOC441956	NA	NP304591	NA	"PREDICTED: Homo sapiens hypothetical LOC441956 (LOC441956), miscRNA [XR_109656]"	chrUn_gl000215:23634-23575	NA	Agilent_HUMAN_G3V2	XR_109656	XR_109656	chrUn_gl000215	    23575	    23634	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23152_PI429285431	0.997808	A	0.90810996	A	1.06414743018841	0	lncRNA	24723-1_{1..415}	lnc-MMP15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MMP15-1:1	chr16	 58153037	 58153451	+	lnc-MMP15-1	lnc-MMP15-1:1	ENSG00000260545.1	CTB-134F13.1	C16orf80	"hg19_refFlat_C16orf80:range=chr16:58147929-581630195'pad=0,hg19_refFlat_C16orf80:range=chr16:58147929-581630195'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00chr16:58143037-58163257"	NA	inner
CUST_23116_PI429285431	4.20536	P	4.3763103	P	0.88825739526286	0	lncRNA	24687-1_{1..800}	lnc-KB-1980E6.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KB-1980E6.3.1-1:1	chr8	103264027	103264826	+	lnc-KB-1980E6.3.1-1	lnc-KB-1980E6.3.1-1:1	ENSG00000246263.2	KB-431C1.4	UBR5	NA	chr8:103254266-103274402	inter
CUST_47634_PI429285431	7.435564	P	7.9291115	P	0.710276421898289	0	lncRNA	51624-1_{1..1573}	"gi|296317340|ref|NR_033676.1| Homo sapiens nucleoporin 62kDa C-terminal like (NUP62CL), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|296317340|ref|NR_033676.1| Homo sapiens nucleoporin 62kDa C-terminal like (NUP62CL), transcript variant 2, non-coding RNA"	ChrX	106366657	106368229	-	54830	NR_033676.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0007941	2.2364929	A	2.1939766	A	1.02990859282443	0	lncRNA	ENST00000455977	NA	NA	NA	NA	XLOC_010407	NA	ENST00000455977	NA	NA	"BROAD Institute lincRNA (XLOC_010407), lincRNA [TCONS_00021559]"	chr13:62823992-62824051	hs|13q21.31	Agilent_HUMAN_G3V2	ENST00000455977	ENST00000455977	chr13	 62823992	 62824051	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38035_PI429285431	0.9050707	A	1.6321275	A	0.604135135967385	0	lncRNA	39118-1_{1..642}	n377608|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029984||-0.9712660|-0.3240470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377608|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029984||-0.9712660|-0.3240470	chr6	  1235683	  1236324	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008991	3.4288702	P	3.2815833	P	1.10748480136266	0	lncRNA	TCONS_00024501	NA	NA	NA	NA	XLOC_011821	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011821), lincRNA [TCONS_00024501]"	chr16:87551352-87552417	hs|16q24.2	Agilent_HUMAN_G3V2	TCONS_00024501	TCONS_00024501	chr16	 87551352	 87552417	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49527_PI429285431	3.8577714	P	3.9980996	P	0.907312726444757	0	lncRNA	53319-1_{1..475}	hg19_lincRNAsTranscripts_TCONS_l2_00024755 range=chr6:42096420-42110415 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024755 range=chr6:42096420-42110415 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	 42096420	 42096894	-	NA	NA	NA	NA	C6orf132	NA	chr6:42086420-42110715	inner
LNCA_21_P0006067	0.8817267	A	0.87428296	A	1.0051729410904	0	lncRNA	ENST00000437471	NA	NA	NA	NA	XLOC_007646	NA	ENST00000437471	NA	NA	"BROAD Institute lincRNA (XLOC_007646), lincRNA [TCONS_00015793]"	chr9:11276296-11275521	hs|9p23	Agilent_HUMAN_G3V2	ENST00000437471	ENST00000437471	chr9	 11275521	 11276296	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6572_PI429285431	4.922398	P	5.14397	P	0.857630429538193	0	lncRNA	6521-1_{1..3000}	"transcript_id ""ENST00000596769.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596769.1"" | genecode_v17"	chr19	 53510765	 53513764	+	ENSG00000267943.1	ENST00000596769.1	CTD-2620I22.3	CTD-2620I22.3-001	ERVV-1	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr19:53507196-53519833"	NA	inter
CUST_39087_PI429285431	3.692325	P	3.733784	P	0.97167179698967	0	lncRNA	40063-1_{1..2502}	n385625|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004asn.1||0.4764510|-0.2113100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385625|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004asn.1||0.4764510|-0.2113100	chr9	 95393148	 95395649	+	NA	NA	NA	NA	IPPK	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-62.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20chr9:95383148-95405650"	NA	inner
CUST_42672_PI429285431	9.435415	P	9.501238	P	0.955400144418541	0	lncRNA	45583-1_{1..68}	ENST00000579879 ncrna:snoRNA chromosome:GRCh37:5:180670312:180670379:-1 gene:ENSG00000264549 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579879 ncrna:snoRNA chromosome:GRCh37:5:180670312:180670379:-1 gene:ENSG00000264549 gene_biotype:snoRNA transcript_biotype:snoRNA	chr5	180670312	180670379	-	ENSG00000264549	ENST00000579879	NA	NA	GNB2L1	NA	chr5:180663928-180670906	inner
LNCA_21_P0006489	3.1462543	P	0.87547797	A	4.82582744278994	0	lncRNA	TCONS_00017154	NA	NA	NA	NA	XLOC_007956	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007956), lincRNA [TCONS_00017154]"	chrX:38796696-38796755	hs|Xp11.4	Agilent_HUMAN_G3V2	TCONS_00017154	TCONS_00017154	chrX	 38796696	 38796755	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20149_PI429285431	1.5674781	A	0.97406715	A	1.50880979819236	0	lncRNA	21794-1_{1..526}	lnc-PAX9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PAX9-2:1	chr14	 37276029	 37276554	+	lnc-PAX9-2	lnc-PAX9-2:1	ENSG00000258690.1	RP11-81F13.1	SLC25A21	NA	chr14:37266029-37286368	inner
CUST_40429_PI429285431	3.3773613	P	3.1694596	P	1.15500708388489	0	lncRNA	41211-1_{1..939}	n409308|NR_033661|lncRNA|Homosapiens||RefGeneNoncode|NR_033661||2.5774100|-0.1534703	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409308|NR_033661|lncRNA|Homosapiens||RefGeneNoncode|NR_033661||2.5774100|-0.1534703	chr22	 23229959	 23230897	+	NA	NA	NA	NA	IGLL5	NA	chr22:23223092-23238014	inner
CUST_45901_PI429285431	4.058552	P	4.290228	P	0.851644948429284	0	lncRNA	50212-1_{1..1992}	"gi|310120777|ref|XR_110541.1| PREDICTED: Homo sapiens uncharacterized LOC644277 (LOC644277), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120777|ref|XR_110541.1| PREDICTED: Homo sapiens uncharacterized LOC644277 (LOC644277), misc_RNA"	Chr11	111299223	111301214	+	644277	XR_110541.1	NA	NA	NA	NA	NA	inter
CUST_49447_PI429285431	1.1648986	A	1.0482208	A	1.08423523735432	0	lncRNA	53246-1_{1..302}	hg19_lincRNAsTranscripts_TCONS_l2_00022710 range=chr5:180710066-180710466 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022710 range=chr5:180710066-180710466 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	180710066	180710367	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29740_PI429285431	5.758185	P	4.2601438	P	2.82458947129434	0	lncRNA	31502-1_{1..556}	n333414|BC010911|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087563|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087563|1.9791200|-0.3320899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333414|BC010911|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000087563|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000087563|1.9791200|-0.3320899	chr3	 57261832	 57262387	+	NA	NA	NA	NA	APPL1	NA	chr3:57261765-57286951	inner
LNCA_21_P0007194	4.7297287	P	3.978733	P	1.68295394846371	0	lncRNA	TCONS_00019277	NA	NA	NA	NA	XLOC_009110	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009110), lincRNA [TCONS_00019277]"	chr11:38700064-38700123	hs|11p12	Agilent_HUMAN_G3V2	TCONS_00019277	TCONS_00019277	chr11	 38700064	 38700123	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25952_PI429285431	10.641667	P	10.382515	P	1.19677504685854	0	lncRNA	27472-1_{1..598}	lnc-TRPV2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRPV2-1:4	chr17	 16344682	 16345279	+	lnc-TRPV2-1	lnc-TRPV2-1:4	ENSG00000175061.10	C17orf76-AS1	C17orf76	NA	chr17:16345328-16355047	inter
CUST_17477_PI429285431	4.858875	P	4.543	P	1.24476637992142	0	lncRNA	19203-1_{1..205}	lnc-PCID2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCID2-1:1	chr13	113807458	113807662	-	lnc-PCID2-1	lnc-PCID2-1:1	XLOC_010736	linc-TUBGCP3-4	F10	NA	chr13:113797458-113803843	inter
CUST_15362_PI429285431	0.89948183	A	0.9038383	A	0.996984879734893	0	lncRNA	17045-1_{1..2141}	lnc-C22orf34-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C22orf34-1:1	chr22	 50062018	 50064158	-	lnc-C22orf34-1	lnc-C22orf34-1:1	XLOC_014411	linc-CERK-2	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00"	NA	inter
CUST_20263_PI429285431	1.9014828	A	2.358468	A	0.728507030357065	0	lncRNA	21906-1_{1..451}	lnc-NUDT11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NUDT11-2:1	chrX	 51138948	 51139398	-	lnc-NUDT11-2	lnc-NUDT11-2:1	ENSG00000229151.1	RP11-348F1.3	NA	NA	NA	inter
LNCA_21_P0002034	2.770688	A	1.5931802	A	2.26185712293778	0	lncRNA	ENST00000439700	NA	NA	NA	NA	XLOC_002033	NA	ENST00000439700	NA	NA	"BROAD Institute lincRNA (XLOC_002033), lincRNA [TCONS_00003240]"	chr2:28671096-28671037	hs|2p23.2	Agilent_HUMAN_G3V2	ENST00000439700	ENST00000439700	chr2	 28671037	 28671096	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7996_PI429285431	0.8991845	A	0.90599793	A	0.99528842466429	0	lncRNA	9607-1_{1..498}	lnc-LGALSL-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LGALSL-2:3	chr2	 64478253	 64478750	+	lnc-LGALSL-2	lnc-LGALSL-2:3	ENSG00000225889	AC074289.1	NA	NA	NA	inter
CUST_12904_PI429285431	3.1369238	A	3.597722	P	0.726584150162572	0	lncRNA	14533-1_{1..784}	lnc-ZFP42-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP42-2:9	chr4	188647753	188648536	+	lnc-ZFP42-2	lnc-ZFP42-2:9	XLOC_003829	linc-ZFP42-3	NA	NA	NA	inter
LNCA_21_P0014636	2.1073344	A	1.820677	A	1.21981080469035	0	lncRNA	ENST00000412918	XR_110844	XR_110844	NA	Hs.664293	ITPKB-IT1	NA	ENST00000412918	THC2613396	NA	"PREDICTED: Homo sapiens ITPKB intronic transcript 1 (non-protein coding) (ITPKB-IT1), miscRNA [XR_110844]"	chr1:226844652-226844593	hs|1q42.12	Agilent_HUMAN_G3V2	ENST00000412918	ENST00000412918	chr1	226844593	226844652	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39113_PI429285431	1.1926882	A	1.5789726	A	0.765097545555517	0	lncRNA	40090-1_{1..402}	n385677|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bge.1||-1.3091900|-0.1730340	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385677|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bge.1||-1.3091900|-0.1730340	chr9	115232002	115232403	-	NA	NA	NA	NA	KIAA1958	NA	chr9:115249248-115258956	inter
LNCA_21_P0002463	1.4979978	A	0.8770857	A	1.53784713102381	0	lncRNA	TCONS_00004316	NA	NA	NA	NA	XLOC_002176	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002176), lincRNA [TCONS_00004316]"	chr2:79102353-79102294	hs|2p12	Agilent_HUMAN_G3V2	TCONS_00004316	TCONS_00004316	chr2	 79102294	 79102353	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26021_PI429285431	5.2013693	P	6.1856394	P	0.50548139581782	0	lncRNA	27540-1_{1..633}	lnc-SETDB1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SETDB1-1:1	chr1	150938607	150939239	+	lnc-SETDB1-1	lnc-SETDB1-1:1	ENSG00000259357.1	RP11-316M1.12	SETDB1	"hg19_refFlat_CERS2:range=chr1:150938624-1509415665'pad=0,hg19_refFlat_CERS2:range=chr1:150938624-1509415665'pad=0 3'pad=0 strand=- repeatMasking=none,-99.60chr1:150928607-150937220"	NA	inner
LNCA_21_P0008002	1.8902721	A	2.6412368	A	0.594206091441972	0	lncRNA	ENST00000452852	NA	NA	NA	NA	XLOC_010652	NA	ENST00000452852	THC2667540	NA	"BROAD Institute lincRNA (XLOC_010652), lincRNA [TCONS_00021670]"	chr13:74120653-74120594	hs|13q22.1	Agilent_HUMAN_G3V2	ENST00000452852	ENST00000452852	chr13	 74120594	 74120653	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00803997	3.6800447	P	4.28869	P	0.655812224826343	0	lncRNA	TCONS_00029713	NA	NA	NA	NA	XLOC_014394	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014394), lincRNA [TCONS_00029713]"	chr22:45529685-45529626	hs|22q13.31	Agilent_HUMAN_G3V2	TCONS_00029713	TCONS_00029713	chr22	 45529626	 45529685	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29915_PI429285431	0.8856017	A	1.0546238	A	0.889445368417798	0	lncRNA	31679-1_{1..285}	n334050|M27729|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195185|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195185|2.6571000|-0.2006493	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334050|M27729|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195185|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195185|2.6571000|-0.2006493	chr14	 23884826	 23885110	-	NA	NA	NA	NA	MYH6	NA	chr14:23874826-23877486	inner
CUST_40349_PI429285431	5.523282	P	3.7938945	P	3.31587012293962	0	lncRNA	41151-2_{3001..4177}	n409066|NR_033127|lncRNA|Homosapiens||RefGeneNoncode|NR_033127||11.0240000|-0.2491357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409066|NR_033127|lncRNA|Homosapiens||RefGeneNoncode|NR_033127||11.0240000|-0.2491357	chrX	110927397	110928573	+	NA	NA	NA	NA	ALG13	NA	chrX:110924346-111003877	inner
CUST_47624_PI429285431	0.89335847	A	1.3784969	A	0.714428515476506	0	lncRNA	51616-1_{1..710}	"gi|397139804|ref|XR_158967.1| PREDICTED: Homo sapiens ARMCX3 antisense RNA 1 (ARMCX3-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139804|ref|XR_158967.1| PREDICTED: Homo sapiens ARMCX3 antisense RNA 1 (ARMCX3-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_158967.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008495	3.3108757	P	4.4865766	P	0.442668646983402	0	lncRNA	TCONS_00022889	NA	NA	NA	NA	XLOC_011143	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011143), lincRNA [TCONS_00022889]"	chr14:103236762-103236703	hs|14q32.32	Agilent_HUMAN_G3V2	TCONS_00022889	TCONS_00022889	chr14	103236703	103236762	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39641_PI429285431	2.1149604	A	0.9800638	A	2.19602822947549	0	lncRNA	40580-1_{1..3000}	n405217|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000257046||0.0387311|-0.2929499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n405217|NULL|lncRNA|Homosapiens||GENCODE|OTTHUMT00000257046||0.0387311|-0.2929499	chr20	 30684321	 30687320	-	NA	NA	NA	NA	HCK	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20chr20:30674321-30689659"	NA	inner
CUST_42112_PI429285431	1.2903154	A	0.9065086	A	1.30478020499682	0	lncRNA	44076-1_{1..72}	ENST00000584656 ncrna:miRNA chromosome:GRCh37:16:2324621:2324692:1 gene:ENSG00000264004 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584656 ncrna:miRNA chromosome:GRCh37:16:2324621:2324692:1 gene:ENSG00000264004 gene_biotype:miRNA transcript_biotype:miRNA	chr16	  2324621	  2324692	+	ENSG00000264004	ENST00000584656	NA	NA	ABCA3	NA	chr16:2325879-2334692	inter
LNCA_21_P0008602	0.8817994	A	0.8759508	A	1.00406216893272	0	lncRNA	ENST00000557523	NA	NA	NA	NA	XLOC_011189	NA	ENST00000557523	THC2673989	NA	"BROAD Institute lincRNA (XLOC_011189), lincRNA [TCONS_00023324]"	chr15:26361687-26361746	hs|15q12	Agilent_HUMAN_G3V2	ENST00000557523	ENST00000557523	chr15	 26361687	 26361746	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10419_PI429285431	0.92176807	A	1.1412078	A	0.858898924707365	0	lncRNA	11946-1_{1..1753}	lnc-PLK2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLK2-2:1	chr5	 57364096	 57365848	-	lnc-PLK2-2	lnc-PLK2-2:1	XLOC_004836	linc-ACTBL2-2	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80"	NA	inter
LNCA_21_P0005942	3.9177604	P	4.2574577	P	0.790207092287037	0	lncRNA	THC2701486	NA	NA	NA	NA	XLOC_006872	NA	NA	THC2701486	NA	"BROAD Institute lincRNA (XLOC_006872), lincRNA [TCONS_00015324]"	NA	NA	Agilent_HUMAN_G3V2	THC2701486	THC2701486	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_420_PI429285431	2.0000257	A	1.8669462	A	1.09663201705048	0	lncRNA	412-1_{1..490}	"transcript_id ""ENST00000449092.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000449092.1"" | genecode_v17"	chr1	144280383	144280872	-	ENSG00000235398.3	ENST00000449092.1	LINC00623	LINC00623-010	NA	NA	NA	inter
CUST_50444_PI429285431	1.1399416	A	0.8921021	A	1.1874275572638	0	lncRNA	54147-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00030495 range=chrX:53187817-53200365 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030495 range=chrX:53187817-53200365 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	 53193817	 53196816	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF649:range=chr19:52393871-524033605'pad=0,hg19_refFlat_ZNF649:range=chr19:52393871-524033605'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00"	NA	inter
LNCA_21_P0005038	2.4932554	A	2.0960321	A	1.31697074670811	0	lncRNA	TCONS_00012218	NA	NA	NA	NA	XLOC_005775	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005775), lincRNA [TCONS_00012218]"	chr6:83386934-83386875	hs|6q14.1	Agilent_HUMAN_G3V2	TCONS_00012218	TCONS_00012218	chr6	 83386875	 83386934	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009420	3.2062204	P	4.3114123	P	0.46484063644299	0	lncRNA	TCONS_00026175	NA	NA	NA	NA	XLOC_012586	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012586), lincRNA [TCONS_00026175]"	chr17:79358736-79358677	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_00026175	TCONS_00026175	chr17	 79358677	 79358736	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014162	3.2047296	P	4.1185427	P	0.530780362196616	0	lncRNA	ENST00000439386	XR_108649	XR_108649	NA	NA	LOC100505730	NA	ENST00000439386	THC2667805	NA	"PREDICTED: Homo sapiens hypothetical LOC100505730, transcript variant 2 (LOC100505730), miscRNA [XR_108649]"	chr6:41491695-41491636	hs|6p21.1	Agilent_HUMAN_G3V2	ENST00000439386	ENST00000439386	chr6	 41491636	 41491695	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00315625	0.9195417	A	0.9645047	A	0.969314676092477	0	lncRNA	THC2686343	NA	NA	NA	NA	XLOC_005441	NA	NA	THC2686343	NA	"BROAD Institute lincRNA (XLOC_005441), lincRNA [TCONS_00011933]"	chr6:114777235-114777294	hs|6q22.1	Agilent_HUMAN_G3V2	THC2686343	THC2686343	chr6	114777235	114777294	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28307_PI429285431	0.91045624	A	1.524226	A	0.65348690873613	0	lncRNA	29950-1_{1..479}	n325610|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316408|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316408|-1.2607800|-0.4135405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325610|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316408|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316408|-1.2607800|-0.4135405	chr14	 98380985	 98381463	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011855	3.1183083	P	2.2815013	A	1.78609274986782	0	lncRNA	ENST00000438432	NA	NA	NA	NA	XLOC_l2_007571	NA	ENST00000438432	THC2623506	NA	"BROAD Institute lincRNA (XLOC_l2_007571), lincRNA [TCONS_l2_00014003]"	chr2:136764807-136764866	hs|2q21.3	Agilent_HUMAN_G3V2	ENST00000438432	ENST00000438432	chr2	136764807	136764866	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002352	6.1004105	P	5.9715805	P	1.09340660830299	0	lncRNA	TCONS_00004025	NA	NA	NA	NA	XLOC_001863	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001863), lincRNA [TCONS_00004025]"	chr2:217861195-217861254	hs|2q35	Agilent_HUMAN_G3V2	TCONS_00004025	TCONS_00004025	chr2	217861195	217861254	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004923	0.8928258	A	1.6202512	A	0.603980802750742	0	lncRNA	TCONS_00011924	NA	NA	NA	NA	XLOC_005434	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005434), lincRNA [TCONS_00011924]"	chr6:113065977-113066036	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00011924	TCONS_00011924	chr6	113065977	113066036	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43555_PI429285431	3.741247	P	3.9926472	P	0.840080683625621	0	lncRNA	48330-1_{1..2671}	"gi|305682554|ref|NR_036595.1| Homo sapiens uncharacterized LOC440600 (LOC440600), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|305682554|ref|NR_036595.1| Homo sapiens uncharacterized LOC440600 (LOC440600), non-coding RNA"	Chr1	110828997	110831667	-	440600	NR_036595.1	NA	NA	NA	"hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00"	NA	inter
LNCA_21_P0011299	2.3902977	A	2.383684	A	1.00459479133757	0	lncRNA	THC2554687	NA	NA	NA	NA	XLOC_l2_004595	NA	NA	THC2554687	NA	"BROAD Institute lincRNA (XLOC_l2_004595), lincRNA [TCONS_l2_00008487]"	chr15:023207199-023207140	hs|15q11.2	Agilent_HUMAN_G3V2	THC2554687	THC2554687	chr15	 23207140	 23207199	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3222354	3.352905	P	3.8222265	P	0.722304217828394	0	lncRNA	XR_109760	NA	XR_109760	   139629	Hs.381355	XAGE-4	XAGE-4 protein	NA	NA	NA	"PREDICTED: Homo sapiens XAGE-4 protein (XAGE-4), miscRNA [XR_109760]"	chrX:55667622-55667563	hs|Xp11.21	Agilent_HUMAN_G3V2	XR_109760	XR_109760	chrX	 55667563	 55667622	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005267	7.144182	P	7.1637945	P	0.986497636783616	0	lncRNA	ENST00000417506	NA	BX538013	NA	Hs.131289	XLOC_006285	NA	ENST00000417506	THC2641055	NA	"BROAD Institute lincRNA (XLOC_006285), lincRNA [TCONS_00013092]"	chr7:149098476-149098535	hs|7q36.1	Agilent_HUMAN_G3V2	ENST00000417506	ENST00000417506	chr7	149098476	149098535	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21826_PI429285431	7.4943876	P	7.3551183	P	1.10134716136823	0	lncRNA	23436-1_{1..679}	lnc-BMP2K-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-BMP2K-1:10	chr4	 80229427	 80230105	+	lnc-BMP2K-1	lnc-BMP2K-1:10	ENSG00000249307.1	RP11-438E5.1	NAA11	NA	chr4:80238272-80239808	inter
CUST_27896_PI429285431	4.4209433	P	4.355549	P	1.04637088217886	0	lncRNA	29491-1_{1..553}	n325134|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331839|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331839|-1.0001200|-0.2890649	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325134|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331839|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331839|-1.0001200|-0.2890649	chr2	138575923	138576475	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013249	4.484555	P	4.714405	P	0.852723546597382	0	lncRNA	TCONS_l2_00026048	NA	NA	NA	NA	XLOC_l2_013485	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013485), lincRNA [TCONS_l2_00026048]"	chr7:76633393-76633452	hs|7q11.23	Agilent_HUMAN_G3V2	TCONS_l2_00026048	TCONS_l2_00026048	chr7	 76633393	 76633452	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1084_PI429285431	3.019502	A	3.6190388	P	0.659965813809231	0	lncRNA	1073-1_{1..298}	"transcript_id ""ENST00000415918.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415918.1"" | genecode_v17"	chr2	140582465	140582762	-	ENSG00000223554.1	ENST00000415918.1	AC078851.1	AC078851.1-001	NA	NA	NA	inter
CUST_46686_PI429285431	1.6632917	A	1.3467349	A	1.24535478028578	0	lncRNA	50849-1_{1..2015}	"gi|300116248|ref|NR_033984.1| Homo sapiens uncharacterized LOC400548 (LOC400548), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300116248|ref|NR_033984.1| Homo sapiens uncharacterized LOC400548 (LOC400548), non-coding RNA"	Chr16	 85170756	 85172770	+	400548	NR_033984.1	NA	NA	NA	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90"	NA	inter
LNCA_21_P0001852	7.7017674	P	8.128721	P	0.743830803940568	0	lncRNA	ENST00000433893	NA	NA	NA	NA	XLOC_001428	NA	ENST00000433893	NA	NA	"BROAD Institute lincRNA (XLOC_001428), lincRNA [TCONS_00002872]"	chr2:37553877-37553936	hs|2p22.2	Agilent_HUMAN_G3V2	ENST00000433893	ENST00000433893	chr2	 37553877	 37553936	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007104	2.5047522	A	1.31148	A	2.28670807400358	0	lncRNA	TCONS_00018940	NA	NA	NA	NA	XLOC_008835	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008835), lincRNA [TCONS_00018940]"	chr10:64884529-64884470	hs|10q21.3	Agilent_HUMAN_G3V2	TCONS_00018940	TCONS_00018940	chr10	 64884470	 64884529	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22305_PI429285431	1.7369782	A	1.6581798	A	1.05613803192548	0	lncRNA	23904-1_{1..903}	lnc-TIGD1L2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIGD1L2-1:5	chr9	 32566389	 32567291	+	lnc-TIGD1L2-1	lnc-TIGD1L2-1:5	ENSG00000235453.3	TOPORS-AS1	NDUFB6	"hg19_refFlat_DFFB:range=chr1:3774168-38003055'pad=0,hg19_refFlat_DFFB:range=chr1:3774168-38003055'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30chr9:32556389-32573182"	NA	inner
LNCA_21_P0004515	0.8813531	A	1.8205	A	0.52154118900536	0	lncRNA	ENST00000503843	XR_108588	XR_108588	NA	Hs.246405	XLOC_004452	NA	ENST00000503843	THC2609622	NA	"PREDICTED: Homo sapiens hypothetical LOC100505878 (LOC100505878), miscRNA [XR_108588]"	chr5:86045285-86045344	hs|5q14.3	Agilent_HUMAN_G3V2	ENST00000503843	ENST00000503843	chr5	 86045285	 86045344	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33820_PI429285431	1.5564983	A	1.3604014	A	1.14559484037506	0	lncRNA	35368-1_{1..1352}	n340606|BC039471|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3068|NULL|-0.9713770|-0.2795496	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340606|BC039471|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3068|NULL|-0.9713770|-0.2795496	chr5	124828953	124830304	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36125_PI429285431	3.0063388	P	2.1588366	A	1.79938287779624	0	lncRNA	37413-1_{1..2636}	n344699|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_248|NULL|-1.2254600|-0.2104784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344699|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_248|NULL|-1.2254600|-0.2104784	chr17	 45127625	 45130260	-	NA	NA	NA	NA	NA	"hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0,hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0,hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0,hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0,hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0,hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	inter
CUST_38546_PI429285431	2.0268922	A	1.9968926	A	1.02101184262256	0	lncRNA	39553-1_{1..2185}	n383255|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002klc.1||1.3664600|-0.2765887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n383255|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002klc.1||1.3664600|-0.2765887	chr18	  1268311	  1270495	-	NA	NA	NA	NA	NA	"hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-28.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60"	NA	inter
CUST_291_PI429285431	1.002833	A	0.90751797	A	1.06829865857903	0	lncRNA	282-1_{1..448}	"transcript_id ""ENST00000427806.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427806.1"" | genecode_v17"	chr1	 77223809	 77224256	-	ENSG00000237552.1	ENST00000427806.1	RP11-415A20.1	RP11-415A20.1-001	NA	NA	NA	inter
CUST_279_PI429201921	5.4227486	P	5.9741306	P	0.68236615659243	0	lncRNA	198-3_{6001..6810}	TC05002830.hg.1	 TCONS_l2_00022763-XLOC_l2_011924 // Broad TUCP // linc-IRX2-8 chr5:-:4968059-4974687 // chr5 // 100 // 100 // 0 // --- // 0///TCONS_l2_00023652-XLOC_l2_011924 // Broad TUCP // linc-IRX2-8 chr5:-:4967876-4970538 // chr5 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr5:-:4967876-4970538	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00023652-XLOC_l2_011924	linc-IRX2-8	chr5	  4967876	  4970538	-	NA	NA	NA	NA	PTP4A2	NA	chr1:32388621-32403988	Unknown
CUST_34118_PI429285431	0.9386727	A	0.92701083	A	1.00811615113416	0	lncRNA	35641-1_{1..1018}	n340951|AY034471|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3416|NULL|-1.3710600|-0.3610327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340951|AY034471|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3416|NULL|-1.3710600|-0.3610327	chr11	  5265783	  5266800	-	NA	NA	NA	NA	HBG2	NA	chr11:5274421-5276011	inter
CUST_8392_PI429285431	7.094209	P	7.418895	P	0.798472153484602	0	lncRNA	9970-1_{1..375}	lnc-TRIML1-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIML1-3:9	chr4	189522922	189523296	+	lnc-TRIML1-3	lnc-TRIML1-3:9	ENSG00000249378	XLOC_003834	NA	NA	NA	inter
LNCA_21_P0005704	3.1923835	P	3.252941	P	0.958893502933445	0	lncRNA	THC2691710	NA	NA	NA	NA	XLOC_006815	NA	NA	THC2691710	NA	"BROAD Institute lincRNA (XLOC_006815), lincRNA [TCONS_00014726]"	chr8:061939949-061940008	hs|8q12.2	Agilent_HUMAN_G3V2	THC2691710	THC2691710	chr8	 61939949	 61940008	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00808726	0.9104029	A	0.927139	A	0.988466446770174	0	lncRNA	XR_110351	XR_110351	XR_110351	NA	NA	LOC100506577	NA	NA	THC2708277	NA	"PREDICTED: Homo sapiens hypothetical LOC100506577 (LOC100506577), miscRNA [XR_110351]"	chr12:41803319-41803260	hs|12q12	Agilent_HUMAN_G3V2	XR_110351	XR_110351	chr12	 41803260	 41803319	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010394	6.4328985	P	6.714383	P	0.822743996918971	0	lncRNA	ENST00000445987	NA	NA	NA	NA	MED15	mediator complex subunit 15	ENST00000445987	NA	GO:0005515|GO:0010467|GO:0005737|GO:0005794|GO:0001104|GO:0006357|GO:0016592|GO:0005654|GO:0005634	"BROAD Institute lincRNA (XLOC_014159), lincRNA [TCONS_00029519]"	chr22:20855028-20855084	hs|22q11.21	Agilent_HUMAN_G3V2	ENST00000445987	ENST00000445987	chr22	 20855028	 20855084	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39510_PI429285431	1.9542379	A	1.5169091	A	1.3540948513032	0	lncRNA	40456-1_{1..2266}	n387292|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011bsh.1||2.2175900|-0.2286343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n387292|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011bsh.1||2.2175900|-0.2286343	chr3	187896330	187898595	+	NA	NA	NA	NA	LPP	NA	chr3:187886330-187908596	inner
LNCA_21_P0005790	1.1272485	A	0.88434523	A	1.18337167623845	0	lncRNA	TCONS_00014915	NA	NA	NA	NA	XLOC_006982	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006982), lincRNA [TCONS_00014915]"	chr8:5715872-5715813	hs|8p23.2	Agilent_HUMAN_G3V2	TCONS_00014915	TCONS_00014915	chr8	  5715813	  5715872	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004798	5.711956	P	6.3706403	P	0.633455728637296	0	lncRNA	ENST00000427974	NA	NA	NA	NA	XLOC_005901	NA	ENST00000427974	NA	NA	"BROAD Institute lincRNA (XLOC_005901), lincRNA [TCONS_00011605]"	chr6:160060474-160060361	hs|6q25.3	Agilent_HUMAN_G3V2	ENST00000427974	ENST00000427974	chr6	160060361	160060474	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26260_PI429285431	3.09151	P	4.0465574	A	0.515824641862691	0	lncRNA	27767-1_{1..643}	lnc-STK39-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STK39-2:1	chr2	168797619	168798261	-	lnc-STK39-2	lnc-STK39-2:1	ENSG00000235335.2	AC016723.4	NA	"hg19_refFlat_B3GALT1:range=chr2:168725550-1687265305'pad=0,hg19_refFlat_B3GALT1:range=chr2:168725550-1687265305'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40"	NA	inter
CUST_19683_PI429285431	3.9459927	P	4.086237	P	0.907365492794622	0	lncRNA	21340-1_{1..789}	lnc-PTPN9-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PTPN9-1:3	chr15	 75893479	 75894267	-	lnc-PTPN9-1	lnc-PTPN9-1:3	ENSG00000260269.1	CTD-2323K18.1	SNUPN	NA	chr15:75890424-75903527	inner
LNCA_21_P0006574	1.7628359	A	1.5599145	A	1.15102678010545	0	lncRNA	TCONS_00017469	NA	NA	NA	NA	XLOC_008081	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008081), lincRNA [TCONS_00017469]"	chrX:146027764-146031284	hs|Xq27.3	Agilent_HUMAN_G3V2	TCONS_00017469	TCONS_00017469	chrX	146027764	146031284	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30850_PI429285431	3.6671	P	3.6468544	P	1.01413210785022	0	lncRNA	32638-1_{1..383}	n336836|AJ581155|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330125|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330125|-1.1607300|-0.2047395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336836|AJ581155|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330125|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330125|-1.1607300|-0.2047395	chr8	 18069900	 18070282	+	NA	NA	NA	NA	NAT1	NA	chr8:18067290-18080283	inner
CUST_21181_PI429285431	0.8808415	A	1.0773922	A	0.872634428894512	0	lncRNA	22806-1_{1..299}	lnc-CCL1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CCL1-2:1	chr17	 32409041	 32409339	-	lnc-CCL1-2	lnc-CCL1-2:1	ENSG00000263485.1	CTC-304I17.4	ACCN1	NA	chr17:32399041-32419243	inner
LNCA_21_P0002188	6.53197	P	6.8306518	P	0.812994895904265	0	lncRNA	TCONS_00003612	NA	NA	NA	NA	XLOC_001406	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001406), lincRNA [TCONS_00003612]"	chr2:27939839-27961152	hs|2p23.2	Agilent_HUMAN_G3V2	TCONS_00003612	TCONS_00003612	chr2	 27939839	 27961152	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47384_PI429285431	0.8940321	A	0.89414805	A	0.999919632814029	0	lncRNA	51432-1_{1..743}	"gi|336455110|ref|NR_038894.1| Homo sapiens CBR3 antisense RNA 1 (CBR3-AS1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336455110|ref|NR_038894.1| Homo sapiens CBR3 antisense RNA 1 (CBR3-AS1), transcript variant 3, non-coding RNA"	Chr21	 37513694	 37514436	-	100506428	NR_038894.1	NA	NA	NA	"hg19_refFlat_CBR3:range=chr21:37507491-375188105'pad=0,hg19_refFlat_CBR3:range=chr21:37507491-375188105'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10"	NA	inter
LNCA_21_P0008644	2.3246667	A	2.7433367	A	0.748113982133686	0	lncRNA	TCONS_00023442	NA	NA	NA	NA	XLOC_011287	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011287), lincRNA [TCONS_00023442]"	chr15:65016842-65016901	hs|15q22.31	Agilent_HUMAN_G3V2	TCONS_00023442	TCONS_00023442	chr15	 65016842	 65016901	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004978	0.8819175	A	0.8741696	A	1.00538488167652	0	lncRNA	TCONS_00012029	NA	NA	NA	NA	XLOC_005561	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005561), lincRNA [TCONS_00012029]"	chr6:170466075-170466134	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012029	TCONS_00012029	chr6	170466075	170466134	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32337_PI429285431	6.734595	P	6.911268	P	0.884740947218398	0	lncRNA	34019-1_{1..2275}	n338917|BC068584|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1343|NULL|-0.7757160|-0.1828200	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338917|BC068584|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1343|NULL|-0.7757160|-0.1828200	chr2	 97584842	 97587116	+	NA	NA	NA	NA	FAM178B	NA	chr2:97574842-97601574	inner
CUST_180_PI429285431	5.7802773	P	6.2941456	P	0.700342089992684	0	lncRNA	170-1_{1..376}	"transcript_id ""ENST00000421114.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421114.1"" | genecode_v17"	chr1	 20738797	 20739172	-	ENSG00000226487.1	ENST00000421114.1	RP4-749H3.2	RP4-749H3.2-001	NA	NA	NA	inter
CUST_45033_PI429285431	3.5048938	P	3.923715	P	0.748035581013793	0	lncRNA	49531-1_{1..1911}	"gi|225543447|ref|NR_027374.1| Homo sapiens LHFPL3 antisense RNA 2 (LHFPL3-AS2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225543447|ref|NR_027374.1| Homo sapiens LHFPL3 antisense RNA 2 (LHFPL3-AS2), non-coding RNA"	Chr7	104535075	104536985	-	723809	NR_027374.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0013686	1.9529887	A	2.028536	A	0.948982047346811	0	lncRNA	ENST00000449730	NA	NA	NA	NA	XLOC_l2_015360	NA	ENST00000449730	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015360), lincRNA [TCONS_l2_00029573]"	chr9:120602836-120602777	hs|9q33.1	Agilent_HUMAN_G3V2	ENST00000449730	ENST00000449730	chr9	120602777	120602836	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14438_PI429285431	0.92000306	A	1.3046947	A	0.765942692774159	0	lncRNA	16100-1_{1..1006}	lnc-C15orf2-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf2-10:1	chr15	 24445341	 24446346	+	lnc-C15orf2-10	lnc-C15orf2-10:1	XLOC_011173	linc-C15orf2-9	NA	NA	NA	inter
CUST_13855_PI429285431	1.262362	A	1.3454242	A	0.944051716658767	0	lncRNA	15498-1_{1..691}	lnc-WRB-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-WRB-2:4	chr21	 40694728	 40695418	+	lnc-WRB-2	lnc-WRB-2:4	XLOC_013942	linc-WRB-2	BRWD1	NA	chr21:40684728-40685712	inter
CUST_52211_PI429285431	3.5771194	P	4.140662	P	0.676638606760793	0	lncRNA	55728-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_00029939 range=chr6_apd_hap1:2336693-2342363 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00029939 range=chr6_apd_hap1:2336693-2342363 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6_apd_hap1	  2336693	  2339692	+	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.71;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-27.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40"	NA	Unknown
LNCA_21_P0007329	3.9508495	P	4.477797	P	0.694021614652359	0	lncRNA	ENST00000531363	NA	NA	NA	NA	XLOC_009398	NA	ENST00000531363	THC2697804	NA	"BROAD Institute lincRNA (XLOC_009398), lincRNA [TCONS_00019596]"	chr11:27238840-27238781	hs|11p14.1	Agilent_HUMAN_G3V2	ENST00000531363	ENST00000531363	chr11	 27238781	 27238840	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33819_PI429285431	0.928396	A	0.9769756	A	0.966887806230166	0	lncRNA	35367-1_{1..461}	n340605|AF086295|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3067|NULL|-1.1394900|-0.3510063	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340605|AF086295|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3067|NULL|-1.1394900|-0.3510063	chr5	122844429	122844889	-	NA	NA	NA	NA	CSNK1G3	NA	chr5:122847793-122854881	inter
LNCA_21_P0014236	5.6511974	P	5.618276	P	1.02308172932345	0	lncRNA	XR_108980	XR_108980	XR_108980	NA	NA	LOC100507319	uncharacterized LOC100507319	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507319 (LOC100507319), miscRNA [XR_108980]"	chr9:97784508-97784567	hs|9q22.32	Agilent_HUMAN_G3V2	XR_108980	XR_108980	chr9	 97784508	 97784567	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38870_PI429285431	7.8218937	P	8.032816	P	0.863984718235253	0	lncRNA	39857-4_{9001..9591}	n384750|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003lqp.2||1.0828400|-0.2094365	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,UCSC,"	>n384750|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003lqp.2||1.0828400|-0.2094365	chr5	148795439	148796029	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.01;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_C22orf39:range=chr22:19429167-194353225'pad=0,hg19_refFlat_C22orf39:range=chr22:19429167-194353225'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-51.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60"	NA	inter
CUST_19948_PI429285431	3.071248	A	3.6637464	P	0.663193420899471	0	lncRNA	21603-1_{1..635}	lnc-VANGL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VANGL2-1:1	chr1	160540729	160541363	+	lnc-VANGL2-1	lnc-VANGL2-1:1	ENSG00000234425.1	RP11-528G1.2	CD84	NA	chr1:160530729-160549306	inner
CUST_36766_PI429285431	2.303706	A	0.92053944	A	2.60840259476428	0	lncRNA	37939-1_{1..3000}	n345246|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_795|NULL|-1.3214200|-0.4346259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345246|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_795|NULL|-1.3214200|-0.4346259	chr14	 71820681	 71823680	+	NA	NA	NA	NA	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70"	NA	inter
LNCA_19_P00327772	6.7107506	P	6.4441247	P	1.20299104232298	0	lncRNA	TCONS_l2_00001143	NA	NA	NA	NA	XLOC_l2_000864	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000864), lincRNA [TCONS_l2_00001143]"	chr1:36528139-36528080	hs|1p34.3	Agilent_HUMAN_G3V2	TCONS_l2_00001143	TCONS_l2_00001143	chr1	 36528080	 36528139	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15233_PI429285431	3.5131266	P	4.3870153	P	0.54567403417182	0	lncRNA	16904-1_{1..1485}	lnc-TCF12-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF12-1:8	chr15	 57599740	 57601224	+	lnc-TCF12-1	lnc-TCF12-1:8	XLOC_011264	linc-CGNL1-2	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80"	NA	inter
LNCA_21_P0008937	0.8937589	A	2.0142088	A	0.459950368841089	0	lncRNA	TCONS_00024397	NA	NA	NA	NA	XLOC_011720	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011720), lincRNA [TCONS_00024397]"	chr16:51351941-51352000	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00024397	TCONS_00024397	chr16	 51351941	 51352000	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32146_PI429285431	7.1924877	P	7.346114	P	0.898987960497907	0	lncRNA	33846-1_{1..917}	n338713|BC035704|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1133|NULL|4.6817500|-0.0548149	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338713|BC035704|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1133|NULL|4.6817500|-0.0548149	chr19	 45596219	 45597135	+	NA	NA	NA	NA	LRRC68	NA	chr19:45596431-45650543	inner
LNCA_21_P0001272	0.8904984	A	0.90032476	A	0.993212029332797	0	lncRNA	TCONS_00000867	NA	NA	NA	NA	XLOC_000095	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000095), lincRNA [TCONS_00000867]"	chr1:24348520-24350188	hs|1p36.11	Agilent_HUMAN_G3V2	TCONS_00000867	TCONS_00000867	chr1	 24348520	 24350188	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8717_PI429285431	2.2450154	A	1.432552	A	1.75620760624931	0	lncRNA	10260-1_{1..1896}	lnc-TSPAN10-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSPAN10-1:1	chr17	 79604544	 79606439	+	lnc-TSPAN10-1	lnc-TSPAN10-1:1	ENSG00000246747	XLOC_012339	NPLOC4	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-62.50chr17:79594544-79604138"	NA	inter
CUST_37368_PI429285431	0.91113645	A	0.9176704	A	0.99548125138496	0	lncRNA	38473-1_{1..1618}	n345818|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1367|NULL|-1.6731900|-0.3342324	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345818|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1367|NULL|-1.6731900|-0.3342324	chr6	113944046	113945663	-	NA	NA	NA	NA	LOC100652953	NA	chr6:113985371-113985691	inter
LNCA_21_P0012136	2.4228234	A	1.1791769	A	2.36796293651149	0	lncRNA	TCONS_l2_00016472	NA	NA	NA	NA	XLOC_l2_008755	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008755), lincRNA [TCONS_l2_00016472]"	chr20:6711560-6711501	hs|20p12.3	Agilent_HUMAN_G3V2	TCONS_l2_00016472	TCONS_l2_00016472	chr20	  6711501	  6711560	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005170	1.5211648	A	2.3202348	A	0.574719537774914	0	lncRNA	TCONS_00012744	NA	NA	NA	NA	XLOC_005744	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005744), lincRNA [TCONS_00012744]"	chr6:53095465-53095406	hs|6p12.1	Agilent_HUMAN_G3V2	TCONS_00012744	TCONS_00012744	chr6	 53095406	 53095465	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38125_PI429285431	4.1363297	P	4.2415853	P	0.929640225132973	0	lncRNA	39198-1_{1..1711}	n381238|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001eng.1||0.1574640|-0.2691133	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381238|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001eng.1||0.1574640|-0.2691133	chr1	145372087	145373797	-	NA	NA	NA	NA	NBPF10	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10chr1:145362087-145368684"	NA	inter
CUST_27043_PI429285431	2.2679818	A	2.762292	A	0.70990102402068	0	lncRNA	28574-1_{1..436}	n324149|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051740|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051740|-1.3010500|-0.3486131	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324149|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051740|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051740|-1.3010500|-0.3486131	chr9	 14015969	 14016404	+	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-59.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-65.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-59.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00"	NA	inter
LNCA_21_P0009537	3.5594268	P	4.43436	P	0.545279113387955	0	lncRNA	TCONS_00026471	NA	NA	NA	NA	XLOC_012799	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012799), lincRNA [TCONS_00026471]"	chr18:26646923-26646864	hs|18q12.1	Agilent_HUMAN_G3V2	TCONS_00026471	TCONS_00026471	chr18	 26646864	 26646923	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31667_PI429285431	5.899087	P	6.28778	P	0.763821269939648	0	lncRNA	33417-1_{1..3000}	n338192|AB007959|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|583|NULL|-1.1488300|-0.2795876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338192|AB007959|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|583|NULL|-1.1488300|-0.2795876	chr1	116380466	116383465	+	NA	NA	NA	NA	NHLH2	"hg19_refFlat_NHLH2:range=chr1:116380586-1163809935'pad=0,hg19_refFlat_NHLH2:range=chr1:116380586-1163809935'pad=0 3'pad=0 strand=- repeatMasking=none,-103.90;hg19_refFlat_NHLH1:range=chr1:160340522-1603409235'pad=0,hg19_refFlat_NHLH1:range=chr1:160340522-1603409235'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10chr1:116378998-116383747"	NA	inner
CUST_571_PI429285431	2.422363	A	2.971035	A	0.683649137490517	0	lncRNA	563-1_{1..451}	"transcript_id ""ENST00000420762.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420762.1"" | genecode_v17"	chr1	219608494	219608944	-	ENSG00000230024.1	ENST00000420762.1	RP11-95P13.1	RP11-95P13.1-001	NA	NA	NA	inter
CUST_48692_PI429285431	13.957068	P	13.708983	P	1.18762963619354	0	lncRNA	52533-1_{1..282}	hg19_lincRNAsTranscripts_TCONS_l2_00014773 range=chr2:109328731-109329171 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014773 range=chr2:109328731-109329171 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	109328731	109329012	-	NA	NA	NA	NA	RANBP2	NA	chr2:109328692-109339171	inter
LNCA_21_P0005241	2.7161317	A	2.1496437	A	1.48091414112197	0	lncRNA	ENST00000431722	NA	NA	NA	NA	XLOC_006154	NA	ENST00000431722	THC2695140	NA	"BROAD Institute lincRNA (XLOC_006154), lincRNA [TCONS_00013024]"	chr7:77624200-77624259	hs|7q21.11	Agilent_HUMAN_G3V2	ENST00000431722	ENST00000431722	chr7	 77624200	 77624259	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8085_PI429285431	0.9100756	A	0.9129654	A	0.997998948056949	0	lncRNA	9691-1_{1..1920}	lnc-STK32A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-STK32A-1:1	chr5	147040016	147041935	+	lnc-STK32A-1	lnc-STK32A-1:1	ENSG00000248255	AC126775.1	JAKMIP2	"hg19_refFlat_JAKMIP2:range=chr5:146981324-1470513695'pad=0,hg19_refFlat_JAKMIP2:range=chr5:146981324-1470513695'pad=0 3'pad=0 strand=- repeatMasking=none,-97.30;hg19_refFlat_ZNF268:range=chr12:133758584-1337787485'pad=0,hg19_refFlat_ZNF268:range=chr12:133758584-1337787485'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_JAKMIP2:range=chr5:146971229-1470513695'pad=0,hg19_refFlat_JAKMIP2:range=chr5:146971229-1470513695'pad=0 3'pad=0 strand=- repeatMasking=none,-97.30chr5:147030016-147051572"	NA	inner
LNCA_21_P0007576	0.8820826	A	0.8761237	A	1.00413893657091	0	lncRNA	THC2706764	NA	NA	NA	NA	XLOC_009793	NA	NA	THC2706764	NA	"BROAD Institute lincRNA (XLOC_009793), lincRNA [TCONS_00020462]"	chr12:068364510-068364569	hs|12q15	Agilent_HUMAN_G3V2	THC2706764	THC2706764	chr12	 68364510	 68364569	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48138_PI429285431	6.585754	P	6.9550304	P	0.774170693470161	0	lncRNA	52006-1_{1..459}	"gi|310110375|ref|XR_111289.1| PREDICTED: Homo sapiens uncharacterized LOC100509541 (LOC100509541), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310110375|ref|XR_111289.1| PREDICTED: Homo sapiens uncharacterized LOC100509541 (LOC100509541), misc_RNA"	NA	NA	NA	NA	NA	XR_111289.1	NA	NA	NA	NA	NA	Unknown
CUST_689_PI429285431	1.1627717	A	0.89847815	A	1.20104778384628	0	lncRNA	682-1_{1..800}	"transcript_id ""ENST00000590971.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590971.1"" | genecode_v17"	chr2	  6766254	  6767053	-	ENSG00000236172.2	ENST00000590971.1	AC097517.2	AC097517.2-027	NA	NA	NA	inter
CUST_13451_PI429285431	0.89441407	A	0.9188846	A	0.983181360527543	0	lncRNA	15089-1_{1..2361}	lnc-GRAMD4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRAMD4-1:1	chr22	 46947913	 46950273	+	lnc-GRAMD4-1	lnc-GRAMD4-1:1	XLOC_014271	linc-GRAMD4-1	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00"	NA	inter
CUST_15987_PI429285431	0.8982238	A	1.1965517	A	0.813194351906955	0	lncRNA	17686-1_{1..3000}	lnc-ZNF207-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-ZNF207-1:1	chr17	 30734851	 30737850	+	lnc-ZNF207-1	lnc-ZNF207-1:1	XLOC_012169	linc-PSMD11	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20"	NA	inter
CUST_40789_PI429285431	6.8316126	P	7.3147364	P	0.715426865438313	0	lncRNA	41500-2_{3001..3330}	n410542|NR_037709|lncRNA|Homosapiens||RefGeneNoncode|NR_037709||7.7407300|-0.1120809	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410542|NR_037709|lncRNA|Homosapiens||RefGeneNoncode|NR_037709||7.7407300|-0.1120809	chr17	 73978297	 73978626	+	NA	NA	NA	NA	ACOX1	NA	chr17:73965297-73975515	inter
LNCA_21_P0012917	2.9758892	P	3.5385861	P	0.677035364915711	0	lncRNA	TCONS_l2_00023027	NA	NA	NA	NA	XLOC_l2_012147	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012147), lincRNA [TCONS_l2_00023027]"	chr5:95170948-95170889	hs|5q15	Agilent_HUMAN_G3V2	TCONS_l2_00023027	TCONS_l2_00023027	chr5	 95170889	 95170948	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005845	0.918926	A	1.7258778	A	0.571588263977068	0	lncRNA	ENST00000521061	NA	NA	NA	NA	XLOC_007101	NA	ENST00000521061	NA	NA	"BROAD Institute lincRNA (XLOC_007101), lincRNA [TCONS_00015024]"	chr8:64346461-64346402	hs|8q12.3	Agilent_HUMAN_G3V2	ENST00000521061	ENST00000521061	chr8	 64346402	 64346461	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003424	2.6345596	A	1.4598931	A	2.25740691676056	0	lncRNA	ENST00000455598	NA	BC121111	NA	NA	XLOC_003758	NA	ENST00000455598	NA	NA	"BROAD Institute lincRNA (XLOC_003758), lincRNA [TCONS_00007668]"	chr4:158493818-158493877	hs|4q32.1	Agilent_HUMAN_G3V2	ENST00000455598	ENST00000455598	chr4	158493818	158493877	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23894_PI429285431	0.9067623	A	0.9096519	A	0.99799908640899	0	lncRNA	25451-1_{1..510}	lnc-RBFA-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBFA-1:8	chr18	 77853168	 77853677	+	lnc-RBFA-1	lnc-RBFA-1:8	ENSG00000261126.1	RP11-795F19.1	NA	NA	NA	inter
LNCA_21_P0002027	2.868978	A	4.1614585	P	0.408248502798067	0	lncRNA	TCONS_00003222	NA	NA	NA	NA	XLOC_002007	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002007), lincRNA [TCONS_00003222]"	chr2:20252046-20251987	hs|2p24.1	Agilent_HUMAN_G3V2	TCONS_00003222	TCONS_00003222	chr2	 20251987	 20252046	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28195_PI429285431	3.0676785	P	3.6429682	P	0.671151467463237	0	lncRNA	29822-1_{1..1475}	n325475|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322858|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322858|2.9784200|-0.2361562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325475|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322858|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322858|2.9784200|-0.2361562	chr2	  3985115	  3986589	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006110	4.251241	P	0.918218	A	10.0772004929101	0	lncRNA	ENST00000414976	NA	NA	NA	NA	XLOC_007857	NA	ENST00000414976	NA	NA	"BROAD Institute lincRNA (XLOC_007857), lincRNA [TCONS_00015885]"	chr9:130801473-130801414	hs|9q34.11	Agilent_HUMAN_G3V2	ENST00000414976	ENST00000414976	chr9	130801414	130801473	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7653_PI429285431	4.111716	P	3.2879097	A	1.77006985900718	0	lncRNA	9285-1_{1..978}	lnc-RP11-366L20.2.1-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-RP11-366L20.2.1-2:9	chr12	 65950861	 65951838	-	lnc-RP11-366L20.2.1-2	lnc-RP11-366L20.2.1-2:9	ENSG00000250748	ENST00000511935	NA	NA	NA	inter
LNCA_21_P0010393	0.8908473	A	2.0333273	A	0.452980232713098	0	lncRNA	TCONS_00029518	NA	NA	NA	NA	XLOC_014159	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014159), lincRNA [TCONS_00029518]"	chr22:20853192-20853251	hs|22q11.21	Agilent_HUMAN_G3V2	TCONS_00029518	TCONS_00029518	chr22	 20853192	 20853251	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49540_PI429285431	4.2508373	P	2.993278	A	2.39090913106821	0	lncRNA	53332-1_{1..472}	hg19_lincRNAsTranscripts_TCONS_l2_00024254 range=chr6:52442439-52443308 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024254 range=chr6:52442439-52443308 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 52442439	 52442910	+	NA	NA	NA	NA	TRAM2	NA	chr6:52432439-52441862	inter
LNCA_21_P0014528	0.8886324	A	0.8970953	A	0.994151136317764	0	lncRNA	XR_110214	XR_110214	XR_110214	NA	Hs.547713	LOC100506496	uncharacterized LOC100506496	NA	THC2604728	NA	"PREDICTED: Homo sapiens hypothetical LOC100506496 (LOC100506496), miscRNA [XR_110214]"	chr6:116577782-116577841	hs|6q22.1	Agilent_HUMAN_G3V2	XR_110214	XR_110214	chr6	116577782	116577841	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_733_PI429285431	1.7328001	A	2.13659	A	0.755870033664482	0	lncRNA	726-1_{1..447}	"transcript_id ""ENST00000442864.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442864.1"" | genecode_v17"	chr2	  8279532	  8279978	+	ENSG00000229740.1	ENST00000442864.1	U91324.1	U91324.1-001	NA	NA	NA	inter
CUST_25642_PI429285431	0.89153665	A	2.475094	A	0.333658150243179	0	lncRNA	27172-1_{1..434}	lnc-KIDINS220-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIDINS220-2:4	chr2	  8818889	  8819322	-	lnc-KIDINS220-2	lnc-KIDINS220-2:4	ENSG00000235092.1	AC011747.7	ID2	NA	chr2:8822113-8824583	inter
LNCA_21_P0002565	3.9814947	P	1.4104944	A	5.94221291829163	0	lncRNA	TCONS_00004671	NA	NA	NA	NA	XLOC_001317	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001317), lincRNA [TCONS_00004671]"	chr2:1756642-1756701	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00004671	TCONS_00004671	chr2	  1756642	  1756701	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46204_PI429285431	1.8429768	A	0.8951256	A	1.92899740153607	0	lncRNA	50447-1_{1..3000}	"gi|333609255|ref|NR_038258.1| Homo sapiens transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 5 (TPTE2P5), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333609255|ref|NR_038258.1| Homo sapiens transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 5 (TPTE2P5), transcript variant 1, non-coding RNA"	Chr13	 41371121	 41374120	-	100616668	NR_038258.1	NA	NA	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SLC25A2:range=chr5:140682527-1406834325'pad=0,hg19_refFlat_SLC25A2:range=chr5:140682527-1406834325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_SLC25A15:range=chr13:41367363-413838035'pad=0,hg19_refFlat_SLC25A15:range=chr13:41367363-413838035'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.20"	NA	inter
CUST_20023_PI429285431	3.1222043	P	3.6363962	P	0.700185019178069	0	lncRNA	21676-1_{1..552}	lnc-NR2F2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NR2F2-4:1	chr15	 96987180	 96987731	+	lnc-NR2F2-4	lnc-NR2F2-4:1	ENSG00000259312.1	RP11-522B15.5	NA	NA	NA	inter
LNCA_21_P0012211	1.7947632	A	0.8780962	A	1.88774906152598	0	lncRNA	ENST00000421604	NA	NA	NA	NA	XLOC_l2_009003	NA	ENST00000421604	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009003), lincRNA [TCONS_l2_00017337]"	chr21:24503466-24503525	hs|21q21.2	Agilent_HUMAN_G3V2	ENST00000421604	ENST00000421604	chr21	 24503466	 24503525	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31401_PI429285431	0.91240865	A	0.8984638	A	1.00971269850394	0	lncRNA	33177-1_{1..3000}	n337869|D16472|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|252|NULL|-1.0198400|-0.3892133	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337869|D16472|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|252|NULL|-1.0198400|-0.3892133	chrX	138002322	138005321	+	NA	NA	NA	NA	FGF13	NA	chrX:137992322-138015938	inner
CUST_26376_PI429285431	0.8815891	A	1.2388161	A	0.780663649881947	0	lncRNA	27883-1_{1..570}	lnc-NKX6-3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKX6-3-2:1	chr8	 41402024	 41402593	-	lnc-NKX6-3-2	lnc-NKX6-3-2:1	ENSG00000253174.2	RP11-360L9.7	GINS4	NA	chr8:41392024-41402565	inner
CUST_16137_PI429285431	0.8941409	A	0.89583004	A	0.998829862516822	0	lncRNA	17843-1_{1..701}	lnc-QDPR-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-QDPR-1:1	chr4	 17461714	 17462414	-	lnc-QDPR-1	lnc-QDPR-1:1	XLOC_003898	linc-LDB2-3	NA	NA	NA	inter
CUST_11923_PI429285431	6.3312516	P	6.4395623	P	0.927673670386157	0	lncRNA	13504-1_{1..1679}	lnc-FAM182B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM182B-1:1	chr20	 25730940	 25732618	-	lnc-FAM182B-1	lnc-FAM182B-1:1	XLOC_013708	linc-ZNF337-10	NA	NA	NA	inter
CUST_14724_PI429285431	0.8798278	A	0.8763451	A	1.00241693978695	0	lncRNA	16388-1_{1..371}	lnc-FES-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FES-1:1	chr15	 91446912	 91447282	+	lnc-FES-1	lnc-FES-1:1	XLOC_011351	linc-MAN2A2	MAN2A2	NA	chr15:91447420-91456964	inter
CUST_372_PI429201921	3.7785778	P	3.493853	P	1.21817786908275	0	lncRNA	238-3_{...	TC6_cox_hap2000220.hg.1	TCONS_l2_00031084-XLOC_l2_015987 // Broad TUCP // linc-C16orf58-3 chr6_cox_hap2:+:4307023-4316060 // chr6_cox_hap2 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6_cox_hap2:+:4307023-4316060	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031084-XLOC_l2_015987	linc-C16orf58-3	chr6_cox_hap2	  4307023	  4316060	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21243_PI429285431	5.8588343	P	6.281499	P	0.746045383284167	0	lncRNA	22869-1_{1..817}	lnc-PROK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-PROK1-1:1	chr1	110958631	110959447	+	lnc-PROK1-1	lnc-PROK1-1:1	ENSG00000224699.1	RP11-225L12.2	HBXIP	"hg19_refFlat_LAMTOR5:range=chr1:110944145-1109504885'pad=0,hg19_refFlat_LAMTOR5:range=chr1:110944145-1109504885'pad=0 3'pad=0 strand=- repeatMasking=none,-98.80chr1:110948631-110950546"	NA	inter
CUST_13435_PI429285431	5.7564893	P	6.179347	P	0.745945585943611	0	lncRNA	15074-1_{1..1082}	lnc-GLA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLA-1:1	chrX	100764349	100765430	-	lnc-GLA-1	lnc-GLA-1:1	XLOC_008198	linc-GLA-1	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50"	NA	inter
LNCA_21_P0001917	8.164472	P	8.075953	P	1.0632781128339	0	lncRNA	ENST00000446520	NA	NA	NA	NA	XLOC_001686	NA	ENST00000446520	NA	NA	"BROAD Institute lincRNA (XLOC_001686), lincRNA [TCONS_00003009]"	chr2:138863310-138863369	hs|2q22.1	Agilent_HUMAN_G3V2	ENST00000446520	ENST00000446520	chr2	138863310	138863369	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011200	4.471022	P	4.392598	P	1.05586398455991	0	lncRNA	ENST00000435725	NA	NA	NA	NA	XLOC_l2_003652	NA	ENST00000435725	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003652), lincRNA [TCONS_l2_00007372]"	chr13:25784374-25784433	hs|13q12.13	Agilent_HUMAN_G3V2	ENST00000435725	ENST00000435725	chr13	 25784374	 25784433	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6871_PI429285431	3.5963032	P	3.9131815	P	0.802805107296842	0	lncRNA	6821-1_{1..509}	"transcript_id ""ENST00000419664.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000419664.1"" | genecode_v17"	chr21	 40378574	 40379082	-	ENSG00000237721.1	ENST00000419664.1	AF064858.11	AF064858.11-001	NA	NA	NA	inter
CUST_51808_PI429285431	0.890513	A	0.88775855	A	1.00191106300923	0	lncRNA	55358-2_{3001..4400}	hg19_lincRNAsTranscripts_TCONS_l2_00012412 range=chr19:23031069-23044102 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012412 range=chr19:23031069-23044102 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 23034069	 23035468	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90"	NA	inter
LNCA_21_P0006655	0.87525004	A	0.8751558	A	1.00006532432384	0	lncRNA	ENST00000448272	NA	NA	NA	NA	XLOC_008395	NA	ENST00000448272	NA	NA	"BROAD Institute lincRNA (XLOC_008395), lincRNA [TCONS_00017790]"	chr10:13465071-13465130	hs|10p13	Agilent_HUMAN_G3V2	ENST00000448272	ENST00000448272	chr10	 13465071	 13465130	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47650_PI429285431	7.7931266	P	8.715232	P	0.527738302057244	0	lncRNA	51635-1_{1..3000}	"gi|211904186|ref|NR_024359.1| Homo sapiens long intergenic non-protein coding RNA 86 (LINC00086), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|211904186|ref|NR_024359.1| Homo sapiens long intergenic non-protein coding RNA 86 (LINC00086), non-coding RNA"	NW_004070887.1	   353086	   356085	+	399668	NR_024359.1	NA	NA	NA	NA	NA	Unknown
CUST_37017_PI429285431	3.8685179	P	3.8168232	P	1.03648173978918	0	lncRNA	38156-1_{1..3000}	n345473|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1022|NULL|-1.4863200|-0.4327791	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345473|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1022|NULL|-1.4863200|-0.4327791	chr1	173865072	173868071	+	NA	NA	NA	NA	ZBTB37	NA	chr1:173855072-173855774	inter
LNCA_21_P0014356	6.3416815	P	6.651863	P	0.806540285060106	0	lncRNA	XR_109436	XR_109436	XR_109436	NA	NA	LOC100507425	uncharacterized LOC100507425	NA	THC2643699	NA	"PREDICTED: Homo sapiens hypothetical LOC100507425 (LOC100507425), miscRNA [XR_109436]"	chr17:77775865-77775924	hs|17q25.3	Agilent_HUMAN_G3V2	XR_109436	XR_109436	chr17	 77775865	 77775924	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31820_PI429285431	2.9720156	A	1.6855551	A	2.43928867088522	0	lncRNA	33557-1_{1..3000}	n338368|BX537597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|763|NULL|-1.1117700|-0.4148928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338368|BX537597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|763|NULL|-1.1117700|-0.4148928	chr1	173900351	173903350	-	NA	NA	NA	NA	RC3H1	NA	chr1:173900352-173915313	inner
CUST_32507_PI429285431	6.4381804	P	4.1437035	P	4.90576082978685	0	lncRNA	34174-1_{1..3000}	n339111|BC037335|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1541|NULL|-1.2470500|-0.3569698	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339111|BC037335|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1541|NULL|-1.2470500|-0.3569698	chr16	 18816174	 18819173	-	NA	NA	NA	NA	SMG1	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-23.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90chr16:18816175-18829185"	NA	inner
CUST_46802_PI429285431	3.3047125	P	3.236244	A	1.04860294297959	0	lncRNA	50948-1_{1..3000}	"gi|319996647|ref|NR_037713.1| Homo sapiens ring finger and FYVE-like domain containing E3 ubiquitin protein ligase (RFFL), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|319996647|ref|NR_037713.1| Homo sapiens ring finger and FYVE-like domain containing E3 ubiquitin protein ligase (RFFL), transcript variant 1, non-coding RNA"	Chr17	 33336131	 33339130	-	117584	NR_037713.1	NA	NA	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80"	NA	inter
CUST_30849_PI429285431	5.5529594	P	5.9173207	P	0.776812704050221	0	lncRNA	32637-1_{1..479}	n336827|AJ581144|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330115|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330115|2.2368900|-0.1364666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336827|AJ581144|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330115|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330115|2.2368900|-0.1364666	chr8	 18248824	 18249302	+	NA	NA	NA	NA	NAT2	NA	chr8:18238824-18258723	inner
CUST_28312_PI429285431	1.7804766	A	1.5105469	A	1.20574907222088	0	lncRNA	29957-1_{1..553}	n325617|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316369|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316369|-0.7406700|-0.2944459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325617|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316369|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316369|-0.7406700|-0.2944459	chr14	 52905848	 52906400	+	NA	NA	NA	NA	GPR137C	"hg19_refFlat_TXNDC16:range=chr14:52899022-530102755'pad=0,hg19_refFlat_TXNDC16:range=chr14:52899022-530102755'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10chr14:53019866-53072710"	NA	inner
LNCA_21_P0013158	0.91632855	A	1.0684397	A	0.899932593337616	0	lncRNA	BC042087	NA	BC042087	NA	Hs.639359	XLOC_l2_013125	NA	ENST00000447557	THC2504255	NA	"BROAD Institute lincRNA (XLOC_l2_013125), lincRNA [TCONS_l2_00025482]"	chr6:135027262-135027203	hs|6q23.2	Agilent_HUMAN_G3V2	BC042087	BC042087	chr6	135027203	135027262	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007528	0.9157538	A	0.9425111	A	0.981624185480014	0	lncRNA	TCONS_00020347	NA	NA	NA	NA	XLOC_009677	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009677), lincRNA [TCONS_00020347]"	chr12:16573722-16590354	hs|12p12.3	Agilent_HUMAN_G3V2	TCONS_00020347	TCONS_00020347	chr12	 16573722	 16590354	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005577	1.0073359	A	2.2230852	A	0.430549405099675	0	lncRNA	TCONS_00014217	NA	NA	NA	NA	XLOC_006258	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006258), lincRNA [TCONS_00014217]"	chr7:133759703-133759762	hs|7q33	Agilent_HUMAN_G3V2	TCONS_00014217	TCONS_00014217	chr7	133759703	133759762	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37237_PI429285431	1.2552428	A	1.2698292	A	0.989940417473832	0	lncRNA	38346-1_{1..3000}	n345669|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1218|NULL|-1.5360900|-0.2628184	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345669|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1218|NULL|-1.5360900|-0.2628184	chr5	 43066488	 43069487	-	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60"	NA	inter
CUST_32665_PI429285431	5.272645	P	4.8131776	P	1.37503410283008	0	lncRNA	34316-1_{1..2963}	n339291|D86640|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1723|NULL|7.4889100|-0.1859263	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339291|D86640|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1723|NULL|7.4889100|-0.1859263	chr3	 36422096	 36425058	+	NA	NA	NA	NA	STAC	NA	chr3:36422097-36589496	inner
CUST_34448_PI429285431	0.917811	A	0.92753154	A	0.993284882949537	0	lncRNA	35924-1_{1..1344}	n341323|BC040296|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3792|NULL|-1.2236600|-0.4885267	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341323|BC040296|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3792|NULL|-1.2236600|-0.4885267	chr7	133446299	133447642	+	NA	NA	NA	NA	EXOC4	NA	chr7:133436299-133457624	inner
CUST_827_PI429285431	1.3235649	A	1.0039263	A	1.24801787703027	0	lncRNA	820-1_{1..1205}	"transcript_id ""ENST00000453774.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453774.1"" | genecode_v17"	chr2	 34938657	 34939861	+	ENSG00000228262.3	ENST00000453774.1	AC073218.2	AC073218.2-002	NA	NA	NA	inter
LNCA_21_P0002954	0.89666414	A	0.9088756	A	0.991571382590623	0	lncRNA	XR_110051	XR_110051	XR_110051	NA	Hs.180744	LOC100506319	uncharacterized LOC100506319	NA	THC2667940	NA	"PREDICTED: Homo sapiens hypothetical LOC100506319 (LOC100506319), miscRNA [XR_110051]"	chr3:44470898-44470957	hs|3p21.31	Agilent_HUMAN_G3V2	XR_110051	XR_110051	chr3	 44470898	 44470957	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31791_PI429285431	1.4976372	A	1.4532373	A	1.03125413205727	0	lncRNA	33530-1_{1..3000}	n338332|BX648502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|726|NULL|-1.0447100|-0.2331900	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338332|BX648502|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|726|NULL|-1.0447100|-0.2331900	chr14	 62023037	 62026036	-	NA	NA	NA	NA	PRKCH	NA	chr14:62013037-62017698	inter
CUST_52120_PI429285431	1.4305723	A	2.5654917	A	0.455360356004168	0	lncRNA	55645-1_{1..327}	hg19_lincRNAsTranscripts_TCONS_l2_00017602 range=chr22:20296669-20300571 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017602 range=chr22:20296669-20300571 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 20296669	 20296995	+	NA	NA	NA	NA	DGCR6L	NA	chr22:20301761-20307628	inter
CUST_16146_PI429285431	2.1564784	A	2.4569807	A	0.811969645428207	0	lncRNA	17851-1_{1..421}	lnc-KCTD12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCTD12-1:1	chr13	 77303480	 77303900	-	lnc-KCTD12-1	lnc-KCTD12-1:1	XLOC_010657	linc-COMMD6-2	NA	NA	NA	inter
LNCA_21_P0007243	5.7139263	P	5.490862	P	1.16721012247167	0	lncRNA	TCONS_00019404	NA	NA	NA	NA	XLOC_009227	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009227), lincRNA [TCONS_00019404]"	chr11:79311356-79311415	hs|11q14.1	Agilent_HUMAN_G3V2	TCONS_00019404	TCONS_00019404	chr11	 79311356	 79311415	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22161_PI429285431	1.4488679	A	1.7267238	A	0.824815929180062	0	lncRNA	23763-1_{1..756}	lnc-COMMD10-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COMMD10-2:4	chr5	115831252	115832007	+	lnc-COMMD10-2	lnc-COMMD10-2:4	ENSG00000248445.1	CTB-118N6.3	SEMA6A	NA	chr5:115821252-115841817	inner
LNCA_21_P0001521	1.7817771	A	1.2538625	A	1.44184351933967	0	lncRNA	TCONS_00001534	NA	NA	NA	NA	XLOC_000880	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000880), lincRNA [TCONS_00001534]"	chr1:79786872-79786813	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_00001534	TCONS_00001534	chr1	 79786813	 79786872	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15082_PI429285431	1.637406	A	1.7655113	A	0.91503237894298	0	lncRNA	16745-1_{1..264}	lnc-AFF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AFF1-1:1	chr4	 88199776	 88200039	+	lnc-AFF1-1	lnc-AFF1-1:1	XLOC_003601	linc-NUDT9-1	NA	NA	NA	inter
CUST_47219_PI429285431	1.2215633	A	0.88595444	A	1.26190985977203	0	lncRNA	51294-1_{1..2353}	"gi|210032049|ref|NR_024267.1| Homo sapiens prion protein (testis specific) (PRNT), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|210032049|ref|NR_024267.1| Homo sapiens prion protein (testis specific) (PRNT), transcript variant 1, non-coding RNA"	Chr20	  4711928	  4714280	-	149830	NR_024267.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008514	1.5659165	A	2.057937	A	0.711028601848706	0	lncRNA	ENST00000556662	NA	NA	NA	NA	XLOC_010856	NA	ENST00000556662	THC2629038	NA	"BROAD Institute lincRNA (XLOC_010856), lincRNA [TCONS_00023004]"	chr14:66589381-66589440	hs|14q23.3	Agilent_HUMAN_G3V2	ENST00000556662	ENST00000556662	chr14	 66589381	 66589440	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30983_PI429285431	1.1747553	A	0.9151102	A	1.19718416356086	0	lncRNA	32771-1_{1..1018}	n337145|AF161921|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383868_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383868_03|4.0010300|-0.0963995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337145|AF161921|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383868_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383868_03|4.0010300|-0.0963995	chr3	 46414414	 46415431	+	NA	NA	NA	NA	CCR5	NA	chr3:46411633-46417697	inner
CUST_30893_PI429285431	2.5067806	A	1.8284874	A	1.60024544270733	0	lncRNA	32681-1_{1..375}	n336909|AY927539|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332701|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332701|-1.0766900|-0.1573216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336909|AY927539|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332701|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332701|-1.0766900|-0.1573216	chr7	 74047826	 74048200	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48280_PI429285431	5.3537383	P	5.2600336	P	1.06710689345608	0	lncRNA	52141-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00001049 range=chr1:16944766-16950434 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001049 range=chr1:16944766-16950434 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 16944766	 16947765	-	NA	NA	NA	NA	NBPF1	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr1:16934766-16939982"	NA	inter
LNCA_21_P0004393	0.88105935	A	0.8734687	A	1.00527530331629	0	lncRNA	TCONS_00010342	NA	NA	NA	NA	XLOC_004830	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004830), lincRNA [TCONS_00010342]"	chr5:55812146-55809746	hs|5q11.2	Agilent_HUMAN_G3V2	TCONS_00010342	TCONS_00010342	chr5	 55809746	 55812146	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50258_PI429285431	1.1182258	A	1.0871987	A	1.02173927517945	0	lncRNA	53981-1_{1..561}	hg19_lincRNAsTranscripts_TCONS_l2_00029362 range=chr9:68433114-68438665 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029362 range=chr9:68433114-68438665 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 68433114	 68433674	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16847_PI429285431	2.7048144	A	3.3310015	P	0.647886454274862	0	lncRNA	18555-1_{1..514}	lnc-ATP6AP2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP6AP2-5:1	chrX	 39797321	 39797834	+	lnc-ATP6AP2-5	lnc-ATP6AP2-5:1	XLOC_007958	linc-ATP6AP2-3	NA	NA	NA	inter
CUST_51022_PI429285431	2.9372866	P	3.0038135	P	0.954934112367911	0	lncRNA	54667-3_{6001..9000}	hg19_lincRNAsTranscripts_TCONS_l2_00007045 range=chr13:19312253-19328859 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007045 range=chr13:19312253-19328859 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr13	 19318253	 19321252	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005264	4.507339	P	4.994748	P	0.713305004222637	0	lncRNA	ENST00000440744	NA	NA	NA	NA	XLOC_006269	NA	ENST00000440744	NA	NA	"BROAD Institute lincRNA (XLOC_006269), lincRNA [TCONS_00013085]"	chr7:135769357-135769416	hs|7q33	Agilent_HUMAN_G3V2	ENST00000440744	ENST00000440744	chr7	135769357	135769416	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006285	0.9218733	A	0.9576814	A	0.97548520700854	0	lncRNA	TCONS_00016378	NA	NA	NA	NA	XLOC_007753	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007753), lincRNA [TCONS_00016378]"	chr9:86189005-86188946	hs|9q21.32	Agilent_HUMAN_G3V2	TCONS_00016378	TCONS_00016378	chr9	 86188946	 86189005	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004431	1.661154	A	2.240113	A	0.669446653246357	0	lncRNA	TCONS_00010443	NA	NA	NA	NA	XLOC_004959	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004959), lincRNA [TCONS_00010443]"	chr5:114999208-114999149	hs|5q22.3	Agilent_HUMAN_G3V2	TCONS_00010443	TCONS_00010443	chr5	114999149	114999208	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51679_PI429285431	0.91033435	A	0.9099025	A	1.0002993804153	0	lncRNA	55241-1_{1..1893}	hg19_lincRNAsTranscripts_TCONS_l2_00011463 range=chr17:72555684-72563679 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011463 range=chr17:72555684-72563679 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 72555684	 72557576	-	NA	NA	NA	NA	NA	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00"	NA	inter
CUST_2952_PI429285431	5.325325	P	5.926863	P	0.659050992611766	0	lncRNA	2933-1_{1..367}	"transcript_id ""ENST00000454149.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454149.2"" | genecode_v17"	chr7	154995857	154996223	+	ENSG00000228521.2	ENST00000454149.2	AC099552.3	AC099552.3-001	NA	NA	NA	inter
CUST_49636_PI429285431	0.9254801	A	1.453797	A	0.693363164834297	0	lncRNA	53420-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00025727 range=chr7:26438161-26580560 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025727 range=chr7:26438161-26580560 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 26438161	 26441160	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34555_PI429285431	1.829134	A	2.258765	A	0.742451658864508	0	lncRNA	36015-1_{1..1683}	n341436|CR617865|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3906|NULL|-1.0300200|-0.3757556	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341436|CR617865|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3906|NULL|-1.0300200|-0.3757556	chr13	111545044	111546726	+	NA	NA	NA	NA	ANKRD10	"hg19_refFlat_ANKRD10:range=chr13:111531984-1115672815'pad=0,hg19_refFlat_ANKRD10:range=chr13:111531984-1115672815'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40chr13:111535044-111556727"	NA	inner
CUST_48059_PI429285431	1.0385517	A	2.524061	A	0.357122441365898	0	lncRNA	51936-1_{1..1912}	"gi|310114151|ref|XR_112327.1| PREDICTED: Homo sapiens uncharacterized LOC100129434 (LOC100129434), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310114151|ref|XR_112327.1| PREDICTED: Homo sapiens uncharacterized LOC100129434 (LOC100129434), misc_RNA"	NA	NA	NA	NA	NA	XR_112327.1	NA	NA	NA	"hg19_refFlat_CCDC85A:range=chr2:56411760-566114905'pad=0,hg19_refFlat_CCDC85A:range=chr2:56411760-566114905'pad=0 3'pad=0 strand=+ repeatMasking=none,-111.00"	NA	Unknown
CUST_15242_PI429285431	0.90649766	A	1.3462024	A	0.737285485048049	0	lncRNA	16913-1_{1..483}	lnc-PLEKHA5-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLEKHA5-4:1	chr12	 19825940	 19826422	+	lnc-PLEKHA5-4	lnc-PLEKHA5-4:1	XLOC_009684	linc-PDE3A-2	NA	NA	NA	inter
CUST_4181_PI429285431	4.0878787	P	4.115904	P	0.980761804587067	0	lncRNA	4140-1_{1..647}	"transcript_id ""ENST00000536744.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536744.1"" | genecode_v17"	chr12	 22852875	 22853521	+	ENSG00000256995.2	ENST00000536744.1	RP11-114G22.1	RP11-114G22.1-002	ETNK1	NA	chr12:22842875-22843608	inter
LNCA_21_P0009443	0.9161382	A	0.9450923	A	0.980130598147336	0	lncRNA	TCONS_00026244	NA	NA	NA	NA	XLOC_012613	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012613), lincRNA [TCONS_00026244]"	chr18:4485534-4485593	hs|18p11.31	Agilent_HUMAN_G3V2	TCONS_00026244	TCONS_00026244	chr18	  4485534	  4485593	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37692_PI429285431	7.3007708	P	6.659803	P	1.55937488061732	0	lncRNA	38784-1_{1..727}	n346183|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1733|NULL|-1.5352200|-0.3359859	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n346183|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1733|NULL|-1.5352200|-0.3359859	chr18	  4264406	  4265132	+	NA	NA	NA	NA	DLGAP1	NA	chr18:4254406-4290961	inner
CUST_2231_PI429285431	2.237069	A	1.6450684	A	1.50733553644148	0	lncRNA	2223-1_{1..482}	"transcript_id ""ENST00000507653.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507653.1"" | genecode_v17"	chr5	 86093502	 86093983	+	ENSG00000248701.1	ENST00000507653.1	CTC-493L21.2	CTC-493L21.2-001	NA	NA	NA	inter
LNCA_21_P0011387	8.24952	P	7.092657	P	2.22972069053011	0	lncRNA	TCONS_l2_00009281	NA	NA	NA	NA	XLOC_l2_005039	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005039), lincRNA [TCONS_l2_00009281]"	chr15:90827697-90827638	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_l2_00009281	TCONS_l2_00009281	chr15	 90827638	 90827697	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38158_PI429285431	0.9146849	A	0.9112958	A	1.0023519065129	0	lncRNA	39230-1_{1..2025}	n381381|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001igh.1||0.3132300|-0.2901737	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n381381|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001igh.1||0.3132300|-0.2901737	chr10	  1136094	  1138118	+	NA	NA	NA	NA	WDR37	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.91;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80chr10:1126094-1148119"	NA	inner
CUST_32198_PI429285431	1.5484443	A	1.7998356	A	0.840085866107666	0	lncRNA	33895-1_{1..1440}	n338774|AF330042|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1196|NULL|-0.8660470|-0.3507031	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338774|AF330042|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1196|NULL|-0.8660470|-0.3507031	chr13	 74700602	 74702041	-	NA	NA	NA	NA	KLF12	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr13:74690602-74708066"	NA	inner
CUST_32446_PI429285431	1.538976	A	1.1709743	A	1.29056401118725	0	lncRNA	34118-1_{1..1477}	n339045|CR600208|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1474|NULL|-0.2145590|-0.4485212	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339045|CR600208|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1474|NULL|-0.2145590|-0.4485212	chr2	182819222	182820698	+	NA	NA	NA	NA	PPP1R1C	NA	chr2:182850551-182982419	inner
CUST_15620_PI429285431	0.9087446	A	0.9188609	A	0.993012442481419	0	lncRNA	17308-1_{1..290}	lnc-C21orf54-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C21orf54-3:1	chr21	 34407477	 34407766	-	lnc-C21orf54-3	lnc-C21orf54-3:1	XLOC_014057	linc-C21orf62-2	OLIG2	NA	chr21:34398239-34401500	inter
LNCA_21_P0003546	0.884697	A	0.88974214	A	0.996509082902482	0	lncRNA	ENST00000506917	NA	NA	NA	NA	XLOC_004189	NA	ENST00000506917	THC2676269	NA	"BROAD Institute lincRNA (XLOC_004189), lincRNA [TCONS_00007917]"	chr4:181652427-181652368	hs|4q34.3	Agilent_HUMAN_G3V2	ENST00000506917	ENST00000506917	chr4	181652368	181652427	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013305	0.8843609	A	0.8889312	A	0.996837121911601	0	lncRNA	TCONS_l2_00026573	NA	NA	NA	NA	XLOC_l2_013835	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013835), lincRNA [TCONS_l2_00026573]"	chr7:55744484-55744425	hs|7p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00026573	TCONS_l2_00026573	chr7	 55744425	 55744484	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003870	2.0720944	A	1.5502911	A	1.43574874435046	0	lncRNA	TCONS_00008968	NA	NA	NA	NA	XLOC_003821	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003821), lincRNA [TCONS_00008968]"	chr4:187137167-187137226	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008968	TCONS_00008968	chr4	187137167	187137226	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002322	0.88340056	A	1.0803688	A	0.872381910483965	0	lncRNA	TCONS_00003952	NA	NA	NA	NA	XLOC_001769	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001769), lincRNA [TCONS_00003952]"	chr2:178424413-178424472	hs|2q31.2	Agilent_HUMAN_G3V2	TCONS_00003952	TCONS_00003952	chr2	178424413	178424472	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22140_PI429285431	10.203275	P	9.721246	P	1.39670660775939	0	lncRNA	23742-1_{1..469}	lnc-RP11-410N8.4.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-410N8.4.1-2:1	chr20	 31161434	 31161902	+	lnc-RP11-410N8.4.1-2	lnc-RP11-410N8.4.1-2:1	ENSG00000233293.1	RP11-410N8.3	LOC284804	NA	chr20:31151434-31171690	inner
LNCA_21_P0006571	0.8812065	A	0.8807656	A	1.00030565529497	0	lncRNA	TCONS_00017457	NA	NA	NA	NA	XLOC_008058	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008058), lincRNA [TCONS_00017457]"	chrX:119126774-119126833	hs|Xq24	Agilent_HUMAN_G3V2	TCONS_00017457	TCONS_00017457	chrX	119126774	119126833	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003718	4.428695	P	4.053115	P	1.29736102186046	0	lncRNA	TCONS_00008431	NA	NA	NA	NA	XLOC_003878	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003878), lincRNA [TCONS_00008431]"	chr4:9387389-9376823	hs|4p16.1	Agilent_HUMAN_G3V2	TCONS_00008431	TCONS_00008431	chr4	  9376823	  9387389	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32383_PI429285431	14.633663	P	14.633663	P	1	0	lncRNA	34060-1_{1..1816}	n338974|AK129949|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1402|NULL|-1.1926700|-0.3398777	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338974|AK129949|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1402|NULL|-1.1926700|-0.3398777	chr2	144883648	144885463	-	NA	NA	NA	NA	GTDC1	NA	chr2:144873648-144895151	inner
LNCA_21_P0003227	0.8801127	A	1.7465525	A	0.548498735583861	0	lncRNA	XR_110051	XR_110051	XR_110051	NA	Hs.180744	LOC100506319	uncharacterized LOC100506319	NA	THC2667940	NA	"PREDICTED: Homo sapiens hypothetical LOC100506319 (LOC100506319), miscRNA [XR_110051]"	chr3:44470913-44470972	hs|3p21.31	Agilent_HUMAN_G3V2	XR_110051	XR_110051	chr3	 44470913	 44470972	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33242_PI429285431	3.1280909	P	3.1526914	P	0.983092791341366	0	lncRNA	34829-1_{1..1343}	n339945|BC006419|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2394|NULL|1.4155700|-0.1629600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339945|BC006419|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2394|NULL|1.4155700|-0.1629600	chr4	 39698765	 39700107	-	NA	NA	NA	NA	UBE2K	"hg19_refFlat_UBE2K:range=chr4:39699948-397800545'pad=0,hg19_refFlat_UBE2K:range=chr4:39699948-397800545'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60chr4:39699664-39710073"	NA	inner
LNCA_21_P0001121	2.533485	A	2.9961956	P	0.725621646694917	0	lncRNA	ENST00000421619	NA	NA	NA	NA	XLOC_000778	NA	ENST00000421619	NA	NA	"BROAD Institute lincRNA (XLOC_000778), lincRNA [TCONS_00000502]"	chr1:33183547-33183488	hs|1p35.1	Agilent_HUMAN_G3V2	ENST00000421619	ENST00000421619	chr1	 33183488	 33183547	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014166	1.1503932	A	0.87428296	A	1.21092561032334	0	lncRNA	XR_108672	XR_108672	XR_108672	NA	Hs.104774	LOC100506379	uncharacterized LOC100506379	NA	THC2635298	NA	"PREDICTED: Homo sapiens hypothetical LOC100506379, transcript variant 2 (LOC100506379), miscRNA [XR_108672]"	chr6:10743658-10743599	hs|6p24.2	Agilent_HUMAN_G3V2	XR_108672	XR_108672	chr6	 10743599	 10743658	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005606	8.915392	P	9.227421	P	0.805508099151645	0	lncRNA	TCONS_00014334	NA	NA	NA	NA	XLOC_006491	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006491), lincRNA [TCONS_00014334]"	chr7:68769105-68748128	hs|7q11.22	Agilent_HUMAN_G3V2	TCONS_00014334	TCONS_00014334	chr7	 68748128	 68769105	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003382	0.88227975	A	0.8742105	A	1.00560884890949	0	lncRNA	ENST00000513793	NA	NA	NA	NA	XLOC_003629	NA	ENST00000513793	NA	NA	"BROAD Institute lincRNA (XLOC_003629), lincRNA [TCONS_00008181]"	chr4:104358136-104358195	hs|4q24	Agilent_HUMAN_G3V2	ENST00000513793	ENST00000513793	chr4	104358136	104358195	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49243_PI429285431	2.6953921	A	3.1595147	P	0.724911810928999	0	lncRNA	53065-1_{1..738}	hg19_lincRNAsTranscripts_TCONS_l2_00022762 range=chr5:4775678-4866420 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022762 range=chr5:4775678-4866420 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	  4775678	  4776415	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_40985_PI429285431	0.9063634	A	0.919524	A	0.99091924855105	0	lncRNA	41654-1_{1..3000}	n411120|NR_038944|lncRNA|Homosapiens||RefGeneNoncode|NR_038944||5.8082700|-0.1295414	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n411120|NR_038944|lncRNA|Homosapiens||RefGeneNoncode|NR_038944||5.8082700|-0.1295414	chr22	 49262581	 49265580	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_579_PI429285431	3.6907122	P	3.606716	P	1.05994999152848	0	lncRNA	571-1_{1..720}	"transcript_id ""ENST00000433576.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433576.1"" | genecode_v17"	chr1	222054323	222055042	-	ENSG00000238042.1	ENST00000433576.1	RP11-815M8.1	RP11-815M8.1-001	NA	NA	NA	inter
LNCA_21_P0001633	2.444592	A	1.2875264	A	2.23003383580334	0	lncRNA	TCONS_00001840	NA	NA	NA	NA	XLOC_001227	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001227), lincRNA [TCONS_00001840]"	chr1:224623330-224623271	hs|1q42.12	Agilent_HUMAN_G3V2	TCONS_00001840	TCONS_00001840	chr1	224623271	224623330	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18012_PI429285431	1.5303664	A	1.5225883	A	1.00540592766362	0	lncRNA	19745-1_{1..707}	lnc-PPDPF-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPDPF-1:3	chr20	 62136708	 62137414	+	lnc-PPDPF-1	lnc-PPDPF-1:3	XLOC_013614	linc-PPDPF-1	EEF1A2	NA	chr20:62126708-62130505	inter
LNCA_21_P0012960	3.361774	P	3.736058	P	0.771488202196654	0	lncRNA	XR_110313	XR_110313	XR_110313	NA	Hs.149321	LOC255187	hCG1980447	NA	THC2733030	NA	"PREDICTED: Homo sapiens hCG1980447 (LOC255187), miscRNA [XR_110313]"	chr5:148443172-148443231	hs|5q32	Agilent_HUMAN_G3V2	XR_110313	XR_110313	chr5	148443172	148443231	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13185_PI429285431	9.143431	P	9.410053	P	0.831263632143636	0	lncRNA	14812-1_{1..875}	lnc-KCNN3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNN3-2:1	chr1	154674323	154675197	-	lnc-KCNN3-2	lnc-KCNN3-2:1	XLOC_001036	linc-ADAR	KCNN3	NA	chr1:154669938-154685050	inner
LNCA_21_P0004074	0.92017263	A	0.9364222	A	0.988799850343054	0	lncRNA	ENST00000503317	NA	NA	NA	NA	XLOC_004646	NA	ENST00000503317	NA	NA	"BROAD Institute lincRNA (XLOC_004646), lincRNA [TCONS_00009542]"	chr5:173757431-173757490	hs|5q35.2	Agilent_HUMAN_G3V2	ENST00000503317	ENST00000503317	chr5	173757431	173757490	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008502	4.676592	P	5.3951755	P	0.607693809281597	0	lncRNA	TCONS_00022931	NA	NA	NA	NA	XLOC_010774	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010774), lincRNA [TCONS_00022931]"	chr14:25591130-25591189	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022931	TCONS_00022931	chr14	 25591130	 25591189	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13121_PI429285431	0.9133914	A	1.1948466	A	0.822760706371225	0	lncRNA	14746-1_{1..491}	lnc-CRTC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRTC3-1:1	chr15	 91067988	 91068478	+	lnc-CRTC3-1	lnc-CRTC3-1:1	XLOC_011348	linc-CRTC3	CRTC3	NA	chr15:91073198-91078340	inter
LNCA_21_P0008444	1.3109301	A	0.9718101	A	1.26498475645223	0	lncRNA	TCONS_00022758	NA	NA	NA	NA	XLOC_011040	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011040), lincRNA [TCONS_00022758]"	chr14:57421068-57418305	hs|14q22.3	Agilent_HUMAN_G3V2	TCONS_00022758	TCONS_00022758	chr14	 57418305	 57421068	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24298_PI429285431	0.91046	A	1.632194	A	0.606368199665301	0	lncRNA	25849-1_{1..851}	lnc-KCNJ13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNJ13-1:1	chr2	233632389	233633239	-	lnc-KCNJ13-1	lnc-KCNJ13-1:1	ENSG00000241409.1	AC064852.4	GIGYF2	"hg19_refFlat_GIGYF2:range=chr2:233599908-2337215705'pad=0,hg19_refFlat_GIGYF2:range=chr2:233599908-2337215705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60chr2:233622389-233642659"	NA	inner
CUST_16023_PI429285431	3.7493258	P	5.0187006	P	0.414839506990647	0	lncRNA	17720-1_{1..207}	lnc-GLI3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLI3-1:1	chr7	 42368450	 42368656	-	lnc-GLI3-1	lnc-GLI3-1:1	XLOC_006419	linc-GLI3-3	NA	NA	NA	inter
CUST_3807_PI429285431	1.8322107	A	1.7124946	A	1.08652103100633	0	lncRNA	3775-1_{1..427}	"transcript_id ""ENST00000421597.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421597.1"" | genecode_v17"	chr10	113109697	113110123	-	ENSG00000227851.1	ENST00000421597.1	RP11-381K7.1	RP11-381K7.1-001	NA	NA	NA	inter
LNCA_33_P3221134	0.9159493	A	0.9431715	A	0.981307913815108	0	lncRNA	XR_132709	XR_132709	XR_132709	100128857	NA	LOC100128857	"beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) pseudogene"	NA	NA	NA	"PREDICTED: Homo sapiens UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1-like (LOC100128857), miscRNA [XR_132709]"	chr2:69826310-69826369	hs|2p13.3	Agilent_HUMAN_G3V2	XR_132709	XR_132709	chr2	 69826310	 69826369	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49458_PI429285431	5.14397	P	4.887337	P	1.19468725566259	0	lncRNA	53258-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00024861 range=chr6:107164396-107235397 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024861 range=chr6:107164396-107235397 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	107164396	107167395	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30"	NA	inter
CUST_31430_PI429285431	3.1925948	A	3.3374283	P	0.904483757108758	0	lncRNA	33201-1_{1..910}	n337899|BC033764|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|282|NULL|-0.5549340|-0.1671497	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337899|BC033764|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|282|NULL|-0.5549340|-0.1671497	chrX	153746163	153747072	-	NA	NA	NA	NA	FAM3A	NA	chrX:153736163-153744566	inter
CUST_38858_PI429285431	6.7050486	P	6.7720647	P	0.954610360944042	0	lncRNA	39848-1_{1..2704}	n384720|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kor.1||-1.2488000|-0.3758260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384720|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kor.1||-1.2488000|-0.3758260	chr5	108528055	108530758	+	NA	NA	NA	NA	FER	NA	chr5:108518055-108523373	inter
LNCA_33_P3415648	8.778091	P	8.622362	P	1.11398437712438	0	lncRNA	ENST00000536864	XR_132817	XR_132817	NA	Hs.434403	NA	NA	ENST00000536864	THC2478567	NA	"PREDICTED: Homo sapiens hypothetical LOC100132046 (LOC100132046), miscRNA [XR_132817]"	chr12:8543467-8543408	hs|12p13.31	Agilent_HUMAN_G3V2	ENST00000536864	ENST00000536864	chr12	  8543408	  8543467	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011066	2.1497214	A	0.9169117	A	2.35024262550389	0	lncRNA	TCONS_l2_00005930	NA	NA	NA	NA	XLOC_l2_003178	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003178), lincRNA [TCONS_l2_00005930]"	chr12:120383321-120391568	hs|12q24.23	Agilent_HUMAN_G3V2	TCONS_l2_00005930	TCONS_l2_00005930	chr12	120383321	120391568	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009367	8.431137	P	8.259362	P	1.12644353678601	0	lncRNA	THC2641000	NA	NA	NA	NA	XLOC_012586	NA	NA	THC2641000	NA	"BROAD Institute lincRNA (XLOC_012586), lincRNA [TCONS_00025780]"	chr17:079354297-079354238	hs|17q25.3	Agilent_HUMAN_G3V2	THC2641000	THC2641000	chr17	 79354238	 79354297	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34686_PI429285431	8.573001	P	7.599181	P	1.9640341295899	0	lncRNA	36138-1_{1..2604}	n341591|AK124366|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4062|NULL|-1.1452800|-0.3817703	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341591|AK124366|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4062|NULL|-1.1452800|-0.3817703	chr8	119271562	119274165	-	NA	NA	NA	NA	SAMD12	NA	chr8:119261562-119284046	inner
CUST_34421_PI429285431	10.041883	P	9.449803	P	1.50741849627129	0	lncRNA	35901-1_{1..2183}	n341294|AK098422|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3763|NULL|-1.0465700|-0.4402551	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341294|AK098422|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3763|NULL|-1.0465700|-0.4402551	chr7	106297213	106299395	-	NA	NA	NA	NA	FLJ36031	NA	chr7:106297211-106301634	inner
CUST_8397_PI429285431	2.5343738	A	2.1265326	A	1.3266991004386	0	lncRNA	9975-1_{1..1820}	lnc-AC009065.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC009065.1-1:1	chr16	  2315543	  2317362	+	lnc-AC009065.1-1	lnc-AC009065.1-1:1	ENSG00000245458	ENST00000500190	ABCA3	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60chr16:2325879-2327329"	NA	inner
CUST_47392_PI429285431	2.57753	A	2.368155	A	1.15618719546056	0	lncRNA	51440-1_{1..1469}	"gi|219521838|ref|NR_026542.1| Homo sapiens chromosome 21 open reading frame 88 (C21orf88), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|219521838|ref|NR_026542.1| Homo sapiens chromosome 21 open reading frame 88 (C21orf88), transcript variant 1, non-coding RNA"	Chr21	 40969074	 40970542	-	114041	NR_026542.1	NA	NA	NA	NA	NA	inter
CUST_7018_PI429285431	0.8841313	A	1.2691011	A	0.765795028801096	0	lncRNA	6965-1_{1..466}	"transcript_id ""ENST00000440430.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440430.1"" | genecode_v17"	chrX	  8831902	  8832367	-	ENSG00000229012.1	ENST00000440430.1	GS1-542M4.4	GS1-542M4.4-001	NA	NA	NA	inter
CUST_14983_PI429285431	1.6370885	A	0.91023904	A	1.65502092770909	0	lncRNA	16646-1_{1..451}	lnc-NCOA3-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NCOA3-6:2	chr20	 46582445	 46582895	+	lnc-NCOA3-6	lnc-NCOA3-6:2	XLOC_013544	linc-ARFGEF2-11	NA	NA	NA	inter
CUST_12993_PI429285431	0.9015997	A	0.88989025	A	1.00814939929547	0	lncRNA	14620-1_{1..513}	lnc-PAX9-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAX9-5:1	chr14	 36931376	 36931888	+	lnc-PAX9-5	lnc-PAX9-5:1	XLOC_010800	linc-PAX9-2	NA	NA	NA	inter
LNCA_21_P0006887	4.0178065	P	4.503342	P	0.714231911836715	0	lncRNA	TCONS_00018255	NA	NA	NA	NA	XLOC_008535	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008535), lincRNA [TCONS_00018255]"	chr10:82292964-82293023	hs|10q23.1	Agilent_HUMAN_G3V2	TCONS_00018255	TCONS_00018255	chr10	 82292964	 82293023	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18193_PI429285431	4.62941	P	5.0193777	P	0.763146690116161	0	lncRNA	19928-1_{1..1253}	lnc-GNAT1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNAT1-1:5	chr3	 50255702	 50256954	+	lnc-GNAT1-1	lnc-GNAT1-1:5	ENSG00000188338	SLC38A3	SLC38A3	NA	chr3:50245702-50258406	inner
CUST_8723_PI429285431	2.8829346	A	3.3930988	P	0.702142519133869	0	lncRNA	10266-1_{1..2577}	lnc-VSTM2B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VSTM2B-1:1	chr19	 30016331	 30018907	+	lnc-VSTM2B-1	lnc-VSTM2B-1:1	ENSG00000245448	ENST00000535449	VSTM2B	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.51chr19:30017491-30026661"	NA	inter
LNCA_21_P0009632	11.3252535	P	11.094652	P	1.17332403894625	0	lncRNA	TCONS_00026722	NA	NA	NA	NA	XLOC_012857	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012857), lincRNA [TCONS_00026722]"	chr18:57053928-57053869	hs|18q21.32	Agilent_HUMAN_G3V2	TCONS_00026722	TCONS_00026722	chr18	 57053869	 57053928	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007676	5.961682	P	6.3791995	P	0.748711853352053	0	lncRNA	TCONS_00020667	NA	NA	NA	NA	XLOC_009971	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009971), lincRNA [TCONS_00020667]"	chr12:175710-175651	hs|12p13.33	Agilent_HUMAN_G3V2	TCONS_00020667	TCONS_00020667	chr12	   175651	   175710	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013881	1.8620636	A	4.0454154	P	0.220163650260313	0	lncRNA	TCONS_l2_00030902	NA	NA	NA	NA	XLOC_l2_015893	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015893), lincRNA [TCONS_l2_00030902]"	chrY:16018749-16018808	hs|Yq11.221	Agilent_HUMAN_G3V2	TCONS_l2_00030902	TCONS_l2_00030902	chrY	 16018749	 16018808	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38924_PI429285431	0.8833871	A	1.0044214	A	0.919528184156743	0	lncRNA	39913-1_{1..1916}	n385028|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qjo.1||-1.1765100|-0.2613990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385028|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qjo.1||-1.1765100|-0.2613990	chr6	143875466	143877381	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006488	0.8828789	A	0.8757163	A	1.00497708071821	0	lncRNA	TCONS_00017153	NA	NA	NA	NA	XLOC_007955	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007955), lincRNA [TCONS_00017153]"	chrX:38745240-38745299	hs|Xp11.4	Agilent_HUMAN_G3V2	TCONS_00017153	TCONS_00017153	chrX	 38745240	 38745299	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36706_PI429285431	1.5159316	A	2.0750873	A	0.67869923871852	0	lncRNA	37887-1_{1..968}	n345194|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_743|NULL|-1.4925300|-0.2731676	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345194|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_743|NULL|-1.4925300|-0.2731676	chr12	110680753	110681720	-	NA	NA	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.40;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90"	NA	inter
LNCA_21_P0004197	1.6340765	A	1.292493	A	1.26714664930748	0	lncRNA	TCONS_00009834	NA	NA	NA	NA	XLOC_004250	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004250), lincRNA [TCONS_00009834]"	chr5:2067466-2067525	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00009834	TCONS_00009834	chr5	  2067466	  2067525	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47542_PI429285431	2.2965891	A	3.0420554	A	0.596475050952909	0	lncRNA	51552-1_{1..3000}	"gi|311213902|ref|NR_027928.2| Homo sapiens CHKB-CPT1B readthrough (non-protein coding) (CHKB-CPT1B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|311213902|ref|NR_027928.2| Homo sapiens CHKB-CPT1B readthrough (non-protein coding) (CHKB-CPT1B), non-coding RNA"	Chr22	 51007290	 51010289	-	386593	NR_027928.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0006422	5.3382454	P	5.65333	P	0.803803854100971	0	lncRNA	ENST00000366224	NA	NA	NA	NA	XLOC_007972	NA	ENST00000366224	NA	NA	"BROAD Institute lincRNA (XLOC_007972), lincRNA [TCONS_00016985]"	chrX:47157318-47157377	hs|Xp11.23	Agilent_HUMAN_G3V2	ENST00000366224	ENST00000366224	chrX	 47157318	 47157377	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18961_PI429285431	0.89575684	A	0.88613254	A	1.00669335746964	0	lncRNA	20653-1_{1..2431}	lnc-GREM2-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GREM2-6:2	chr1	239882250	239884680	-	lnc-GREM2-6	lnc-GREM2-6:2	ENSG00000233355	RP11-343J24.1	CHRM3	NA	chr1:239872250-239892366	inner
CUST_44638_PI429285431	5.794154	P	5.9127398	P	0.921090105655434	0	lncRNA	49202-2_{3001..4620}	"gi|300193047|ref|NR_024019.2| Homo sapiens family with sequence similarity 193, member B (FAM193B), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300193047|ref|NR_024019.2| Homo sapiens family with sequence similarity 193, member B (FAM193B), transcript variant 2, non-coding RNA"	Chr5	176949790	176951409	-	54540	NR_024019.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0014225	1.8954958	A	3.1766088	P	0.411477942107508	0	lncRNA	XR_108921	XR_108921	XR_108921	NA	NA	LOC100505905	uncharacterized LOC100505905	NA	THC2536532	NA	"PREDICTED: Homo sapiens hypothetical LOC100505905, transcript variant 1 (LOC100505905), miscRNA [XR_108921]"	chr9:549476-549535	hs|9p24.3	Agilent_HUMAN_G3V2	XR_108921	XR_108921	chr9	   549476	   549535	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38145_PI429285431	6.223209	P	6.475457	P	0.839587155086214	0	lncRNA	39216-1_{1..740}	n381332|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hdi.1||-0.7501890|-0.1909686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381332|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001hdi.1||-0.7501890|-0.1909686	chr1	205765004	205765743	-	NA	NA	NA	NA	SLC41A1	NA	chr1:205758221-205775744	inner
CUST_48110_PI429285431	0.9214895	A	2.004692	A	0.471979956731334	0	lncRNA	51983-1_{1..2783}	"gi|310115559|ref|XR_113207.1| PREDICTED: Homo sapiens chromosome 9 open reading frame 38 (C9orf38), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310115559|ref|XR_113207.1| PREDICTED: Homo sapiens chromosome 9 open reading frame 38 (C9orf38), misc_RNA"	NA	NA	NA	NA	NA	XR_113207.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10"	NA	Unknown
CUST_51418_PI429285431	8.614125	P	8.215378	P	1.31836239796686	0	lncRNA	54997-1_{1..524}	hg19_lincRNAsTranscripts_TCONS_l2_00009583 range=chr16:8976217-8979196 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009583 range=chr16:8976217-8979196 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr16	  8976217	  8976740	+	NA	NA	NA	NA	USP7	NA	chr16:8985951-8989196	inter
CUST_14813_PI429285431	2.1078932	A	3.2691407	A	0.44712573813498	0	lncRNA	16474-2_{3001..6000}	lnc-CRYBA4-1:27	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:27	chr22	 27120613	 27123612	+	lnc-CRYBA4-1	lnc-CRYBA4-1:27	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
LNCA_21_P0014180	1.0943594	A	2.3427768	A	0.420909681751487	0	lncRNA	ENST00000474396	XR_108726	XR_108726	NA	NA	GPR146	G protein-coupled receptor 146	ENST00000474396	THC2637218	GO:0005886|GO:0004930|GO:0004872|GO:0016021|GO:0004871	"PREDICTED: Homo sapiens hypothetical LOC100505568 (LOC100505568), miscRNA [XR_108726]"	chr7:1095841-1095900	hs|7p22.3	Agilent_HUMAN_G3V2	ENST00000474396	ENST00000474396	chr7	  1095841	  1095900	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8677_PI429285431	0.9132021	A	0.9138968	A	0.999518586570314	0	lncRNA	10225-2_{3001..5127}	lnc-CCT7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCT7-1:1	chr2	 73516036	 73518162	+	lnc-CCT7-1	lnc-CCT7-1:1	ENSG00000246432	AC010913.1	EGR4	NA	chr2:73518057-73520829	inner
LNCA_33_P3315814	0.91999376	A	0.96540725	A	0.969012049142703	0	lncRNA	XR_108453	XR_108453	XR_108453	   728208	Hs.730147	LOC728208	uncharacterized LOC728208	ENST00000425110	THC2625072	NA	"PREDICTED: Homo sapiens hypothetical LOC728208 (LOC728208), miscRNA [XR_108453]"	chr2:241920991-241920932	hs|2q37.3	Agilent_HUMAN_G3V2	XR_108453	XR_108453	chr2	241920932	241920991	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18206_PI429285431	2.3706076	A	2.911542	P	0.687325600083281	0	lncRNA	19941-1_{1..731}	lnc-C11orf49-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C11orf49-1:1	chr11	 46894625	 46895355	+	lnc-C11orf49-1	lnc-C11orf49-1:1	ENSG00000247675	RP11-411D10.1	LRP4	"hg19_refFlat_LRP4:range=chr11:46880534-469399305'pad=0,hg19_refFlat_LRP4:range=chr11:46880534-469399305'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80chr11:46884625-46905064"	NA	inner
CUST_13750_PI429285431	3.744143	P	3.3095424	P	1.35153661780094	0	lncRNA	15394-1_{1..787}	lnc-AGAP9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AGAP9-1:1	chr10	 48117475	 48118261	+	lnc-AGAP9-1	lnc-AGAP9-1:1	XLOC_008481	linc-AGAP9-2	NA	NA	NA	inter
CUST_23896_PI429285431	4.781568	P	4.623249	P	1.11598605513139	0	lncRNA	25453-1_{1..884}	lnc-DHRS7B-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHRS7B-5:5	chr17	 20836027	 20836910	+	lnc-DHRS7B-5	lnc-DHRS7B-5:5	ENSG00000233098.3	RP11-344E13.3	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70"	NA	inter
LNCA_21_P0006931	1.4514285	A	1.3832481	A	1.04839356238492	0	lncRNA	TCONS_00018373	NA	NA	NA	NA	XLOC_008653	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008653), lincRNA [TCONS_00018373]"	chr10:125320019-125321564	hs|10q26.13	Agilent_HUMAN_G3V2	TCONS_00018373	TCONS_00018373	chr10	125320019	125321564	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19218_PI429285431	3.7828822	P	4.8356266	P	0.482050300395083	0	lncRNA	20888-1_{1..497}	lnc-OR1Q1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR1Q1-1:2	chr9	125401877	125402373	+	lnc-OR1Q1-1	lnc-OR1Q1-1:2	ENSG00000234156.1	RP11-64P14.7	NA	NA	NA	inter
LNCA_21_P0006497	4.2831507	P	4.314029	P	0.978824216622149	0	lncRNA	TCONS_00017174	NA	NA	NA	NA	XLOC_007985	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007985), lincRNA [TCONS_00017174]"	chrX:52942198-52944043	hs|Xp11.22	Agilent_HUMAN_G3V2	TCONS_00017174	TCONS_00017174	chrX	 52942198	 52944043	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011567	0.8884275	A	1.2308736	A	0.788702925979457	0	lncRNA	ENST00000440522	NA	NA	NA	NA	XLOC_l2_005988	NA	ENST00000440522	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005988), lincRNA [TCONS_l2_00011094]"	chr17:13203195-13203136	hs|17p12	Agilent_HUMAN_G3V2	ENST00000440522	ENST00000440522	chr17	 13203136	 13203195	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014122	5.6446314	P	5.794347	P	0.901428144580926	0	lncRNA	XR_108500	XR_108500	XR_108500	NA	NA	LOC100507375	uncharacterized LOC100507375	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507375 (LOC100507375), miscRNA [XR_108500]"	chr3:141622510-141595743	hs|3q23	Agilent_HUMAN_G3V2	XR_108500	XR_108500	chr3	141595743	141622510	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006824	3.9372323	P	4.095545	P	0.896072457391985	0	lncRNA	TCONS_00018102	NA	NA	NA	NA	XLOC_008370	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008370), lincRNA [TCONS_00018102]"	chr10:6627603-6627662	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018102	TCONS_00018102	chr10	  6627603	  6627662	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009435	3.3182883	P	2.5743008	A	1.67479846393107	0	lncRNA	TCONS_00026226	NA	NA	NA	NA	XLOC_012601	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012601), lincRNA [TCONS_00026226]"	chr18:316878-316937	hs|18p11.32	Agilent_HUMAN_G3V2	TCONS_00026226	TCONS_00026226	chr18	   316878	   316937	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009812	1.8113555	A	0.8808464	A	1.9059484508655	0	lncRNA	BX648826	NA	BX648826	NA	Hs.550704	XLOC_013545	NA	NA	THC2498723	NA	"BROAD Institute lincRNA (XLOC_013545), lincRNA [TCONS_00027869]"	chr20:46589182-46589241	hs|20q13.13	Agilent_HUMAN_G3V2	BX648826	BX648826	chr20	 46589182	 46589241	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38282_PI429285431	0.89404726	A	1.1290036	A	0.849710713379949	0	lncRNA	39337-1_{1..2274}	n381904|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tcd.2||-1.0115000|-0.3521209	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n381904|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tcd.2||-1.0115000|-0.3521209	chr12	 92815306	 92817579	+	NA	NA	NA	NA	CLLU1	NA	chr12:92815307-92824778	inter
LNCA_21_P0001287	0.8816769	A	1.2288432	A	0.786126669800485	0	lncRNA	TCONS_00000896	NA	NA	NA	NA	XLOC_000149	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000149), lincRNA [TCONS_00000896]"	chr1:38678846-38678905	hs|1p34.3	Agilent_HUMAN_G3V2	TCONS_00000896	TCONS_00000896	chr1	 38678846	 38678905	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19566_PI429285431	3.7408283	P	3.6347585	P	1.07629219634145	0	lncRNA	21222-1_{1..230}	lnc-ASIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASIP-1:1	chr20	 32669604	 32669833	+	lnc-ASIP-1	lnc-ASIP-1:1	ENSG00000229472.1	RP1-64K7.4	RALY	NA	chr20:32659604-32668067	inner
CUST_11870_PI429285431	0.8931844	A	0.88233984	A	1.00754519882367	0	lncRNA	13450-1_{1..1930}	lnc-NPY5R-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NPY5R-1:2	chr4	164040537	164042466	+	lnc-NPY5R-1	lnc-NPY5R-1:2	XLOC_003765	linc-NPY5R-1	NAF1	NA	chr4:164047860-164051790	inter
CUST_37406_PI429285431	4.304381	P	4.405931	P	0.932031099598022	0	lncRNA	38512-1_{1..483}	n345860|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1409|NULL|-1.2670100|-0.2141420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345860|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1409|NULL|-1.2670100|-0.2141420	chr15	100417175	100417657	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30501_PI429285431	11.48246	P	10.7057905	P	1.71317140246407	0	lncRNA	32281-1_{1..1061}	n335655|CR610199|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000289394|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000289394|2.4937000|-0.2112576	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335655|CR610199|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000289394|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000289394|2.4937000|-0.2112576	chr1	 54502283	 54503343	-	NA	NA	NA	NA	TCEANC2	NA	chr1:54519274-54529078	inner
LNCA_21_P0009694	3.115516	P	3.4241388	P	0.807412148947788	0	lncRNA	XR_109585	XR_109585	XR_109585	NA	Hs.380776	LOC374890	uncharacterized LOC374890	NA	THC2748324	NA	"PREDICTED: Homo sapiens hypothetical LOC374890 (LOC374890), miscRNA [XR_109585]"	chr19:22798771-22798712	hs|19p12	Agilent_HUMAN_G3V2	XR_109585	XR_109585	chr19	 22798712	 22798771	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25130_PI429285431	1.2073077	A	1.7404702	A	0.691038262806716	0	lncRNA	26668-1_{1..561}	lnc-NTSR2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NTSR2-2:1	chr2	 11885293	 11885853	-	lnc-NTSR2-2	lnc-NTSR2-2:1	ENSG00000230790.2	AC012456.4	LPIN1	NA	chr2:11886740-11895427	inner
CUST_34656_PI429285431	0.9179558	A	0.9195619	A	0.99888735576143	0	lncRNA	36109-1_{1..3000}	n341557|BC040572|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4028|NULL|-1.2286200|-0.3503252	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341557|BC040572|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4028|NULL|-1.2286200|-0.3503252	chr8	 91658668	 91661667	+	NA	NA	NA	NA	TMEM64	NA	chr8:91648668-91658133	inter
LNCA_33_P3302210	7.1115856	P	7.2338324	P	0.918755699669457	0	lncRNA	XR_113108	XR_113108	XR_113108	100129129	Hs.662094	LOC100129129	uncharacterized LOC100129129	ENST00000525867	THC2610893	NA	"PREDICTED: Homo sapiens hypothetical LOC100129129 (LOC100129129), miscRNA [XR_113108]"	chr8:11203536-11203477	hs|8p23.1	Agilent_HUMAN_G3V2	XR_113108	XR_113108	chr8	 11203477	 11203536	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3398181	2.5838976	A	1.8746485	A	1.63495292842341	0	lncRNA	XR_111781	XR_111781	XR_111781	100127909	Hs.637202	LOC100127909	uncharacterized LOC100127909	NA	THC2490434	NA	"PREDICTED: Homo sapiens hypothetical LOC100127909 (LOC100127909), miscRNA [XR_111781]"	chr18:45660599-45660540	hs|18q21.1	Agilent_HUMAN_G3V2	XR_111781	XR_111781	chr18	 45660540	 45660599	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00315649	8.275004	P	7.945284	P	1.25676943551717	0	lncRNA	ENST00000530955	XR_110530	XR_110530	NA	NA	LOC100507165	NA	ENST00000530955	THC2497699	NA	"PREDICTED: Homo sapiens hypothetical LOC100507165 (LOC100507165), miscRNA [XR_110530]"	chr11:121899218-121899159	hs|11q24.1	Agilent_HUMAN_G3V2	ENST00000530955	ENST00000530955	chr11	121899159	121899218	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007496	0.8970392	A	0.90907425	A	0.991692637462729	0	lncRNA	XR_110323	XR_110323	XR_110323	NA	Hs.156898	LOC100507498	uncharacterized LOC100507498	NA	THC2602472	NA	"PREDICTED: Homo sapiens hypothetical LOC100507498 (LOC100507498), miscRNA [XR_110323]"	chr12:78720549-78720490	hs|12q21.2	Agilent_HUMAN_G3V2	XR_110323	XR_110323	chr12	 78720490	 78720549	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37051_PI429285431	0.901742	A	0.9128734	A	0.992313991068461	0	lncRNA	38186-3_{6001..9000}	n345503|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1052|NULL|-1.5131900|-0.2775711	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345503|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1052|NULL|-1.5131900|-0.2775711	chr2	134889533	134892532	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60"	NA	inter
CUST_34058_PI429285431	5.271652	P	5.473937	P	0.869172840688634	0	lncRNA	35588-1_{1..2705}	n340878|CR614876|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3343|NULL|-1.2900300|-0.3917528	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340878|CR614876|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3343|NULL|-1.2900300|-0.3917528	chr6	 22587404	 22590108	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47401_PI429285431	1.0549371	A	0.89660925	A	1.11599290100429	0	lncRNA	51445-1_{1..3000}	"gi|224028235|ref|NR_026961.1| Homo sapiens uncharacterized LOC284837 (LOC284837), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224028235|ref|NR_026961.1| Homo sapiens uncharacterized LOC284837 (LOC284837), non-coding RNA"	Chr21	 45225639	 45228638	-	284837	NR_026961.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0005160	0.88442445	A	0.8886673	A	0.997063400752534	0	lncRNA	TCONS_00012690	NA	NA	NA	NA	XLOC_005677	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005677), lincRNA [TCONS_00012690]"	chr6:31139616-31139557	hs|6p21.33	Agilent_HUMAN_G3V2	TCONS_00012690	TCONS_00012690	chr6	 31139557	 31139616	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45299_PI429285431	0.89652514	A	0.89831555	A	0.998759752100395	0	lncRNA	49743-1_{1..2330}	"gi|299782588|ref|NR_033863.1| Homo sapiens uncharacterized LOC401492 (FLJ41200), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|299782588|ref|NR_033863.1| Homo sapiens uncharacterized LOC401492 (FLJ41200), non-coding RNA"	Chr9	 13406379	 13408708	-	401492	NR_033863.1	NA	NA	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	inter
CUST_4798_PI429285431	2.5292068	A	2.8150318	A	0.8202724048256	0	lncRNA	4742-1_{1..889}	"transcript_id ""ENST00000555442.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000555442.1"" | genecode_v17"	chr14	 46175475	 46176363	-	ENSG00000258616.1	ENST00000555442.1	RP11-369C8.1	RP11-369C8.1-002	NA	NA	NA	inter
CUST_36017_PI429285431	7.091534	P	7.20524	P	0.924210893825148	0	lncRNA	37349-1_{1..2046}	n344627|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_175|NULL|-1.3295800|-0.5033266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344627|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_175|NULL|-1.3295800|-0.5033266	chr21	 26935741	 26937786	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37558_PI429285431	3.1025705	P	2.681413	A	1.33900142869721	0	lncRNA	38661-1_{1..385}	n346033|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1583|NULL|-1.3684900|-0.2478873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346033|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1583|NULL|-1.3684900|-0.2478873	chr22	 22006493	 22006877	+	NA	NA	NA	NA	SDF2L1	NA	chr22:21996542-21998588	inter
CUST_2196_PI429285431	1.2617753	A	1.6365548	A	0.771223276655014	0	lncRNA	2188-1_{1..484}	"transcript_id ""ENST00000427584.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427584.2"" | genecode_v17"	chr5	 72509809	 72510292	+	ENSG00000249743.1	ENST00000427584.2	RP11-60A8.1	RP11-60A8.1-003	NA	NA	NA	inter
LNCA_21_P0003095	4.5041304	P	4.8008795	P	0.814084750750115	0	lncRNA	TCONS_00006387	NA	NA	NA	NA	XLOC_003006	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003006), lincRNA [TCONS_00006387]"	chr3:196326985-196327044	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00006387	TCONS_00006387	chr3	196326985	196327044	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15048_PI429285431	7.2368097	P	7.200161	P	1.02572834740102	0	lncRNA	16711-1_{1..387}	lnc-MRM1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRM1-2:1	chr17	 35080602	 35080988	+	lnc-MRM1-2	lnc-MRM1-2:1	XLOC_012184	linc-LHX1-1	NA	NA	NA	inter
CUST_6011_PI429285431	8.190727	P	8.251568	P	0.958705091944119	0	lncRNA	5936-1_{1..596}	"transcript_id ""ENST00000570301.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000570301.1"" | genecode_v17"	chr17	 79349822	 79350417	-	ENSG00000262223.2	ENST00000570301.1	RP11-1055B8.3	RP11-1055B8.3-002	LOC100130370	NA	chr17:79352934-79357447	inter
CUST_35159_PI429285431	0.9038912	A	0.9030033	A	1.00061563480699	0	lncRNA	36561-1_{1..3000}	n342131|BC041459|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4615|NULL|-1.0331900|-0.3073920	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n342131|BC041459|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4615|NULL|-1.0331900|-0.3073920	chr6	133823389	133826388	-	NA	NA	NA	NA	EYA4	"hg19_refFlat_EYA4:range=chr6:133595919-1338499435'pad=0,hg19_refFlat_EYA4:range=chr6:133595919-1338499435'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70chr6:133813389-133853258"	NA	inner
CUST_15931_PI429285431	6.3498416	P	6.526803	P	0.884564101953106	0	lncRNA	17628-1_{1..400}	lnc-MYOM1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYOM1-2:1	chr18	  3350485	  3350884	-	lnc-MYOM1-2	lnc-MYOM1-2:1	XLOC_012746	linc-MYOM1-1	NA	NA	NA	inter
CUST_14858_PI429285431	1.8879122	A	1.8020637	A	1.06131175284254	0	lncRNA	16521-1_{1..232}	lnc-PIK3R1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIK3R1-5:1	chr5	 67950900	 67951131	+	lnc-PIK3R1-5	lnc-PIK3R1-5:1	XLOC_004415	linc-SLC30A5-3	NA	NA	NA	inter
CUST_134_PI429285431	1.7544943	A	2.5438282	A	0.578611178159323	0	lncRNA	126-1_{1..429}	"transcript_id ""ENST00000429389.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429389.1"" | genecode_v17"	chr1	  2730997	  2731425	-	ENSG00000231630.1	ENST00000429389.1	RP11-740P5.3	RP11-740P5.3-001	NA	NA	NA	inter
CUST_16639_PI429285431	0.91098785	A	0.91381043	A	0.998045449258021	0	lncRNA	18341-1_{1..3000}	lnc-ID2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ID2-1:1	chr2	  8807569	  8810568	+	lnc-ID2-1	lnc-ID2-1:1	XLOC_001333	linc-ID2-1	NA	NA	NA	inter
CUST_39409_PI429285431	0.8877121	A	1.1243081	A	0.848745543885326	0	lncRNA	40369-1_{1..1828}	n386649|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010rbv.1||7.3275600|-0.1131059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386649|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010rbv.1||7.3275600|-0.1131059	chr11	  9115909	  9117736	+	NA	NA	NA	NA	SCUBE2	NA	chr11:9105909-9113150	inter
LNCA_21_P0010786	0.8826616	A	0.8764845	A	1.00429081876338	0	lncRNA	ENST00000416349	XR_112010	XR_112010	NA	NA	XLOC_l2_001289	NA	ENST00000416349	THC2667586	NA	"PREDICTED: Homo sapiens hypothetical LOC100509303, transcript variant 2 (LOC100509303), miscRNA [XR_112010]"	chr1:209320709-209320650	hs|1q32.2	Agilent_HUMAN_G3V2	ENST00000416349	ENST00000416349	chr1	209320650	209320709	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44320_PI429285431	6.0596724	P	6.0205154	P	1.02751325150731	0	lncRNA	48952-1_{1..2590}	"gi|195539378|ref|NR_003264.2| Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1 (SDHAP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|195539378|ref|NR_003264.2| Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1 (SDHAP1), non-coding RNA"	Chr3	195686792	195689381	-	255812	NR_003264.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0009824	0.88157344	A	0.87678003	A	1.00332806437638	0	lncRNA	ENST00000425900	NA	NA	NA	NA	XLOC_013452	NA	ENST00000425900	NA	NA	"BROAD Institute lincRNA (XLOC_013452), lincRNA [TCONS_00027898]"	chr20:7127244-7127303	hs|20p12.3	Agilent_HUMAN_G3V2	ENST00000425900	ENST00000425900	chr20	  7127244	  7127303	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51433_PI429285431	9.119352	P	8.912257	P	1.15436142853929	0	lncRNA	55010-2_{3001..4759}	hg19_lincRNAsTranscripts_TCONS_l2_00010039 range=chr16:20737620-20743136 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010039 range=chr16:20737620-20743136 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 20740620	 20742378	-	NA	NA	NA	NA	THUMPD1	"hg19_refFlat_ACSM4:range=chr12:7456928-74809695'pad=0,hg19_refFlat_ACSM4:range=chr12:7456928-74809695'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00chr16:20744986-20753136"	NA	inter
CUST_14593_PI429285431	1.3008797	A	1.0948912	A	1.15347641044078	0	lncRNA	16260-1_{1..357}	lnc-FAM153B-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM153B-3:5	chr5	175413729	175414085	+	lnc-FAM153B-3	lnc-FAM153B-3:5	XLOC_004653	linc-FAM153B	NA	NA	NA	inter
LNCA_19_P00315541	0.9230987	A	1.8453134	A	0.527698321597189	0	lncRNA	XR_133032	XR_133032	XR_133032	NA	Hs.351262	LOC100507428	NA	NA	THC2495739	NA	"PREDICTED: Homo sapiens hypothetical LOC100507428 (LOC100507428), miscRNA [XR_133032]"	chr13:54701538-54701479	hs|13q14.3	Agilent_HUMAN_G3V2	XR_133032	XR_133032	chr13	 54701479	 54701538	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3943_PI429285431	6.8959665	P	7.0693245	P	0.886776227261346	0	lncRNA	3913-1_{1..524}	"transcript_id ""ENST00000525654.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525654.1"" | genecode_v17"	chr11	 50257750	 50258273	+	ENSG00000254518.1	ENST00000525654.1	RP11-347H15.4	RP11-347H15.4-002	NA	NA	NA	inter
LNCA_21_P0009633	0.9222518	A	0.97252595	A	0.965752793057532	0	lncRNA	TCONS_00026724	NA	NA	NA	NA	XLOC_012866	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012866), lincRNA [TCONS_00026724]"	chr18:62603539-62603480	hs|18q22.1	Agilent_HUMAN_G3V2	TCONS_00026724	TCONS_00026724	chr18	 62603480	 62603539	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006467	0.92134935	A	2.1963007	A	0.413239093929852	0	lncRNA	ENST00000414071	NA	NA	NA	NA	XLOC_008251	NA	ENST00000414071	NA	NA	"BROAD Institute lincRNA (XLOC_008251), lincRNA [TCONS_00017098]"	chrX:144314872-144314500	hs|Xq27.3	Agilent_HUMAN_G3V2	ENST00000414071	ENST00000414071	chrX	144314500	144314872	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12026_PI429285431	1.4902792	A	1.6508073	A	0.894697506038805	0	lncRNA	13608-1_{1..224}	lnc-HNRNPA3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HNRNPA3-4:1	chr2	177710935	177711158	+	lnc-HNRNPA3-4	lnc-HNRNPA3-4:1	XLOC_001767	linc-HNRNPA3-2	NA	NA	NA	inter
LNCA_21_P0003696	1.317367	A	1.1484733	A	1.12419608822194	0	lncRNA	TCONS_00008373	NA	NA	NA	NA	XLOC_003829	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003829), lincRNA [TCONS_00008373]"	chr4:188543028-188543087	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008373	TCONS_00008373	chr4	188543028	188543087	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001362	0.9132578	A	2.3583262	A	0.367274744945735	0	lncRNA	TCONS_00001091	NA	NA	NA	NA	XLOC_000336	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000336), lincRNA [TCONS_00001091]"	chr1:109756334-109756393	hs|1p13.3	Agilent_HUMAN_G3V2	TCONS_00001091	TCONS_00001091	chr1	109756334	109756393	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27942_PI429285431	1.400192	A	1.3759962	A	1.01691267750331	0	lncRNA	29546-1_{1..609}	n325189|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330061|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330061|-1.1454000|-0.3054102	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325189|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330061|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330061|-1.1454000|-0.3054102	chr2	107368519	107369127	-	NA	NA	NA	NA	ST6GAL2	NA	chr2:107418056-107503563	inner
CUST_37056_PI429285431	0.914369	A	0.92946196	A	0.989592889980668	0	lncRNA	38189-2_{3001..3597}	n345506|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1055|NULL|-1.2835500|-0.4154358	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345506|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1055|NULL|-1.2835500|-0.4154358	chr2	184046953	184047549	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_4605_PI429285431	1.673573	A	1.9281133	A	0.838254193231982	0	lncRNA	4553-2_{3001..3907}	"transcript_id ""ENST00000444442.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444442.1"" | genecode_v17"	chr13	 44121054	 44121960	+	ENSG00000233821.1	ENST00000444442.1	ENOX1-AS1	ENOX1-AS1-001	ENOX1	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10chr13:44108054-44132192"	NA	inner
CUST_42978_PI429285431	2.3357916	A	0.9164114	A	2.67470577534306	0	lncRNA	46127-1_{1..81}	ENST00000391078 ncrna:snoRNA chromosome:GRCh37:15:25509657:25509737:1 gene:ENSG00000212380 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391078 ncrna:snoRNA chromosome:GRCh37:15:25509657:25509737:1 gene:ENSG00000212380 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 25509657	 25509737	+	ENSG00000212380	ENST00000391078	NA	NA	SNRPN	NA	chr15:25499657-25519737	inter
CUST_5314_PI429285431	0.906791	A	1.003831	A	0.934949275093933	0	lncRNA	5254-1_{1..457}	"transcript_id ""ENST00000554318.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554318.2"" | genecode_v17"	chr15	 94133096	 94133552	+	ENSG00000258631.2	ENST00000554318.2	RP11-739G5.1	RP11-739G5.1-001	NA	NA	NA	inter
CUST_25800_PI429285431	2.2230852	A	2.362224	A	0.908061050028829	0	lncRNA	27321-1_{1..1711}	lnc-GPR39-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GPR39-3:1	chr2	133687452	133689162	+	lnc-GPR39-3	lnc-GPR39-3:1	ENSG00000233729.1	AC016909.1	NCKAP5	NA	chr2:133677452-133699067	inner
CUST_27317_PI429285431	7.756456	P	7.7145104	P	1.02950126308525	0	lncRNA	28877-1_{1..260}	n324471|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041303|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041303|-1.2148300|-0.2784935	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324471|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041303|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041303|-1.2148300|-0.2784935	chr6	 80036813	 80037072	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49418_PI429285431	4.0221963	P	4.3900914	P	0.774912273665005	0	lncRNA	53223-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00023267 range=chr5:175602228-175626411 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023267 range=chr5:175602228-175626411 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175605228	175608227	-	NA	NA	NA	NA	NA	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_14687_PI429285431	1.435364	A	1.7464465	A	0.806036737252461	0	lncRNA	16356-1_{1..582}	lnc-TMCC1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMCC1-4:3	chr3	129995459	129996040	-	lnc-TMCC1-4	lnc-TMCC1-4:3	XLOC_003250	linc-TMCC1-1	NA	NA	NA	inter
CUST_31563_PI429285431	1.3002058	A	0.8970611	A	1.32238723181094	0	lncRNA	33321-1_{1..1872}	n338056|BC043369|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|443|NULL|-0.9153390|-0.2999524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338056|BC043369|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|443|NULL|-0.9153390|-0.2999524	chr1	 90229103	 90230974	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49653_PI429285431	1.0871786	A	1.5231394	A	0.739201300475707	0	lncRNA	53436-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00025990 range=chr7:66311611-66351433 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025990 range=chr7:66311611-66351433 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 66311611	 66314610	+	NA	NA	NA	NA	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20"	NA	inter
LNCA_21_P0005077	2.005379	A	2.5792012	A	0.671834505697175	0	lncRNA	TCONS_00012345	NA	NA	NA	NA	XLOC_005899	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005899), lincRNA [TCONS_00012345]"	chr6:159804189-159804130	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_00012345	TCONS_00012345	chr6	159804130	159804189	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8688_PI429285431	0.8866879	A	0.88805914	A	0.999049980414748	0	lncRNA	10236-1_{1..3000}	lnc-CPM-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-CPM-2:3	chr12	 69080517	 69083516	-	lnc-CPM-2	lnc-CPM-2:3	ENSG00000247363	ENST00000500695	NUP107	NA	chr12:69079560-69090639	inter
CUST_37655_PI429285431	2.8633668	A	1.4113116	A	2.73597528893471	0	lncRNA	38748-1_{1..810}	n346136|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1686|NULL|-1.3222500|-0.3945514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346136|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1686|NULL|-1.3222500|-0.3945514	chr12	 66439262	 66440071	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30987_PI429285431	1.9576802	A	2.3721368	A	0.750302047328391	0	lncRNA	32775-1_{1..649}	n337150|AF399537|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383954|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383954|-1.0714900|-0.1966401	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337150|AF399537|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383954|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383954|-1.0714900|-0.1966401	chr19	  9296659	  9297307	-	NA	NA	NA	NA	OR7D4	"hg19_refFlat_OR7D2:range=chr19:9296458-92973965'pad=0,hg19_refFlat_OR7D2:range=chr19:9296458-92973965'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_OR10Q1:range=chr11:57995388-579963475'pad=0,hg19_refFlat_OR10Q1:range=chr11:57995388-579963475'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00chr19:9302105-9307308"	NA	inner
CUST_11610_PI429285431	1.5574617	A	1.9684703	A	0.752097392378973	0	lncRNA	13190-1_{1..574}	lnc-TNP1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNP1-5:2	chr2	217931334	217931907	-	lnc-TNP1-5	lnc-TNP1-5:2	XLOC_002488	linc-TNP1-3	NA	NA	NA	inter
CUST_12296_PI429285431	1.042415	A	1.277163	A	0.849833429205544	0	lncRNA	13907-1_{1..1146}	lnc-RWDD3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RWDD3-1:1	chr1	 95752179	 95753324	+	lnc-RWDD3-1	lnc-RWDD3-1:1	XLOC_000307	linc-PTBP2-7	NA	NA	NA	inter
CUST_7210_PI429285431	0.90134656	A	0.892179	A	1.00637470083355	0	lncRNA	7637-1_{1..314}	"transcript_id ""ENST00000517192.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000517192.1"" | genecode_v17"	chr4	164749952	164750265	-	ENSG00000253001.1	ENST00000517192.1	RN7SKP105	RN7SKP105-201	1-Mar	NA	chr4:164739952-164760265	inner
CUST_1453_PI429285431	2.2030404	A	2.9899266	A	0.579593692586053	0	lncRNA	1442-1_{1..713}	"transcript_id ""ENST00000599176.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599176.1"" | genecode_v17"	chr3	125579510	125580222	-	ENSG00000241288.2	ENST00000599176.1	RP11-379B18.5	RP11-379B18.5-007	NA	NA	NA	inter
CUST_50597_PI429285431	7.2727575	P	6.870658	P	1.32142953905893	0	lncRNA	54286-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00003644 range=chr10:81525581-81588826 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003644 range=chr10:81525581-81588826 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr10	 81525581	 81528580	-	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-54.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30"	NA	inter
CUST_40613_PI429285431	0.8927536	A	0.89373696	A	0.999318619034039	0	lncRNA	41359-1_{1..3000}	n410095|NR_036526|lncRNA|Homosapiens||RefGeneNoncode|NR_036526||7.1903200|-0.2385265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n410095|NR_036526|lncRNA|Homosapiens||RefGeneNoncode|NR_036526||7.1903200|-0.2385265	chr9	100000707	100003706	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48401_PI429285431	1.3054793	A	2.3695083	A	0.478294464623977	0	lncRNA	52254-1_{1..2450}	hg19_lincRNAsTranscripts_TCONS_l2_00001484 range=chr1:142711392-142716779 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001484 range=chr1:142711392-142716779 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	142711392	142713841	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37067_PI429285431	0.8918612	A	0.8804356	A	1.00795106558707	0	lncRNA	38198-2_{3001..3483}	n345515|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1064|NULL|-1.4190800|-0.2425175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345515|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1064|NULL|-1.4190800|-0.2425175	chr2	 20732143	 20732625	+	NA	NA	NA	NA	HS1BP3	"hg19_refFlat_NDUFAF2:range=chr5:60241083-604487825'pad=0,hg19_refFlat_NDUFAF2:range=chr5:60241083-604487825'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30chr2:20729156-20810965"	NA	inter
LNCA_21_P0005517	0.88297176	A	0.87479776	A	1.00568186597003	0	lncRNA	TCONS_00013897	NA	NA	NA	NA	XLOC_006529	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006529), lincRNA [TCONS_00013897]"	chr7:96285797-96283120	hs|7q21.3	Agilent_HUMAN_G3V2	TCONS_00013897	TCONS_00013897	chr7	 96283120	 96285797	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004026	0.8831004	A	0.87509406	A	1.00556499939757	0	lncRNA	TCONS_00009446	NA	NA	NA	NA	XLOC_004459	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004459), lincRNA [TCONS_00009446]"	chr5:87713246-87713305	hs|5q14.3	Agilent_HUMAN_G3V2	TCONS_00009446	TCONS_00009446	chr5	 87713246	 87713305	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001708	3.1365652	P	4.6074805	P	0.360753350766421	0	lncRNA	TCONS_00002202	NA	NA	NA	NA	XLOC_000495	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000495), lincRNA [TCONS_00002202]"	chr1:185532449-185590104	hs|1q25.3	Agilent_HUMAN_G3V2	TCONS_00002202	TCONS_00002202	chr1	185532449	185590104	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32248_PI429285431	0.888703	A	0.8863057	A	1.00166306309407	0	lncRNA	33940-1_{1..1909}	n338823|AK123196|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1246|NULL|-1.0183200|-0.2143138	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338823|AK123196|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1246|NULL|-1.0183200|-0.2143138	chr2	 46896008	 46897916	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17033_PI429285431	1.4164971	A	1.445036	A	0.980412715141915	0	lncRNA	18745-1_{1..1041}	lnc-DEC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DEC1-2:1	chr9	118365137	118366177	+	lnc-DEC1-2	lnc-DEC1-2:1	XLOC_007530	linc-PAPPA-5	NA	NA	NA	inter
CUST_51240_PI429285431	4.6267004	P	6.045299	P	0.374075503870524	0	lncRNA	54853-1_{1..2924}	hg19_lincRNAsTranscripts_TCONS_l2_00008925 range=chr15:23108449-23158445 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008925 range=chr15:23108449-23158445 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 23108449	 23111372	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30818_PI429285431	1.124455	A	1.4726816	A	0.785549123014476	0	lncRNA	32605-1_{1..372}	n336747|Z77828|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328121|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328121|-0.0169086|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336747|Z77828|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328121|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328121|-0.0169086|-1.0000000	chr14	 22458750	 22459121	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37090_PI429285431	3.6033509	P	4.518359	P	0.530340893080962	0	lncRNA	38216-2_{3001..4859}	n345534|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1083|NULL|-1.4757100|-0.2508002	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n345534|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1083|NULL|-1.4757100|-0.2508002	chr2	 75148821	 75150679	-	NA	NA	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.71;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90"	NA	inter
CUST_94_PI429285431	0.9181041	A	0.9179459	A	1.00010966189639	0	lncRNA	86-1_{1..2860}	"transcript_id ""ENST00000444227.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,"	">transcript_id ""ENST00000444227.1"" | genecode_v17"	chr19	 58915623	 58918482	-	ENSG00000232098.2	ENST00000444227.1	CTD-2619J13.14	CTD-2619J13.14-201	RPS5	"hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0,hg19_refFlat_LEPR:range=chr1:66031249-660960885'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-57.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00chr19:58905623-58906171"	NA	inter
CUST_41812_PI429285431	0.9180788	A	0.9235595	A	0.996208275059784	0	lncRNA	43404-1_{1..81}	ENST00000385090 ncrna:miRNA chromosome:GRCh37:19:54198467:54198547:1 gene:ENSG00000207825 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385090 ncrna:miRNA chromosome:GRCh37:19:54198467:54198547:1 gene:ENSG00000207825 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54198467	 54198547	+	ENSG00000207825	ENST00000385090	NA	NA	NA	NA	NA	inter
CUST_20699_PI429285431	0.9315232	A	2.2575126	A	0.398875550576061	0	lncRNA	22335-1_{1..467}	lnc-NID2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NID2-1:1	chr14	 52453881	 52454347	-	lnc-NID2-1	lnc-NID2-1:1	ENSG00000258854.1	RP11-463J10.4	C14orf166	NA	chr14:52456228-52463937	inter
CUST_31706_PI429285431	0.9834844	A	1.2273055	A	0.844505603029711	0	lncRNA	33449-1_{1..1668}	n338235|BC034423|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|627|NULL|-0.9325960|-0.2779574	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338235|BC034423|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|627|NULL|-0.9325960|-0.2779574	chr14	 29252696	 29254363	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14019_PI429285431	3.6906338	P	3.6715164	P	1.01333935777965	0	lncRNA	15667-1_{1..465}	lnc-RP11-82I10.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-82I10.1.1-2:1	chr15	 98213466	 98213930	-	lnc-RP11-82I10.1.1-2	lnc-RP11-82I10.1.1-2:1	XLOC_011602	linc-RGMA-5	NA	NA	NA	inter
LNCA_21_P0006267	0.89238346	A	0.9026121	A	0.992935121445824	0	lncRNA	TCONS_00016320	NA	NA	NA	NA	XLOC_007693	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007693), lincRNA [TCONS_00016320]"	chr9:43151785-43151726	hs|9p12	Agilent_HUMAN_G3V2	TCONS_00016320	TCONS_00016320	chr9	 43151726	 43151785	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23141_PI429285431	9.803093	P	9.909607	P	0.928829694032597	0	lncRNA	24712-1_{1..434}	lnc-HPD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HPD-1:1	chr12	122338782	122339215	-	lnc-HPD-1	lnc-HPD-1:1	ENSG00000257020.1	RP11-87C12.4	PSMD9	NA	chr12:122328782-122348900	inner
CUST_48563_PI429285431	5.048478	P	5.0701528	P	0.985088468103993	0	lncRNA	52411-1_{1..1573}	hg19_lincRNAsTranscripts_TCONS_l2_00014209 range=chr2:208527126-208543833 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014209 range=chr2:208527126-208543833 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	208527126	208528698	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-25.06;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-32.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-25.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.61;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10"	NA	inter
CUST_5458_PI429285431	1.7779177	A	1.4486144	A	1.2564064896516	0	lncRNA	5392-1_{1..2463}	"transcript_id ""ENST00000566996.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566996.1"" | genecode_v17"	chr16	 23681332	 23683794	+	ENSG00000260482.1	ENST00000566996.1	CTD-2196E14.9	CTD-2196E14.9-001	PLK1	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90chr16:23690201-23694448"	NA	inner
CUST_13062_PI429285431	6.4828143	P	6.591015	P	0.927744404665535	0	lncRNA	14689-1_{1..706}	lnc-TMEM18-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM18-2:1	chr2	   714072	   714777	-	lnc-TMEM18-2	lnc-TMEM18-2:1	XLOC_001931	linc-TMEM18-3	NA	NA	NA	inter
LNCA_21_P0014436	1.1111612	A	0.88181114	A	1.17230670130166	0	lncRNA	ENST00000417305	XR_109785	XR_109785	NA	Hs.571764	LOC100506003	NA	ENST00000417305	THC2652092	NA	"PREDICTED: Homo sapiens hypothetical LOC100506003 (LOC100506003), miscRNA [XR_109785]"	chrY:2849902-2834945	hs|Yp11.31	Agilent_HUMAN_G3V2	ENST00000417305	ENST00000417305	chrY	  2834945	  2849902	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011227	0.8815438	A	0.8806829	A	1.00059690848675	0	lncRNA	ENST00000417987	NA	NA	NA	NA	XLOC_l2_003974	NA	ENST00000417987	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003974), lincRNA [TCONS_l2_00007175]"	chr13:48400336-48400277	hs|13q14.2	Agilent_HUMAN_G3V2	ENST00000417987	ENST00000417987	chr13	 48400277	 48400336	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17158_PI429285431	2.6676826	A	3.5240808	P	0.552329772151936	0	lncRNA	18867-1_{1..456}	lnc-TRIM7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIM7-1:1	chr5	180632994	180633449	-	lnc-TRIM7-1	lnc-TRIM7-1:1	XLOC_005114	linc-TRIM7-2	TRIM7	NA	chr5:180622994-180632177	inter
CUST_23904_PI429285431	6.2351804	P	5.7686825	P	1.38175123306168	0	lncRNA	25461-1_{1..386}	lnc-KLHL35-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-KLHL35-1:1	chr11	 75219212	 75219597	-	lnc-KLHL35-1	lnc-KLHL35-1:1	ENSG00000254460.1	RP11-939C17.4	GDPD5	NA	chr11:75209212-75229436	inner
CUST_13908_PI429285431	0.9917485	A	0.9142434	A	1.05519168413141	0	lncRNA	15555-1_{1..338}	lnc-AHR-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AHR-2:1	chr7	 17133141	 17133478	+	lnc-AHR-2	lnc-AHR-2:1	XLOC_005997	linc-AHR-1	NA	NA	NA	inter
CUST_30393_PI429285431	1.4542942	A	1.2317629	A	1.1667789793188	0	lncRNA	32173-1_{1..546}	n335511|BC062430|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000260393|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000260393|2.9083800|-0.1762018	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335511|BC062430|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000260393|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000260393|2.9083800|-0.1762018	chr11	  1940932	  1941477	+	NA	NA	NA	NA	TNNT3	NA	chr11:1940799-1959936	inner
LNCA_21_P0003643	0.8816849	A	1.9991479	A	0.460903618736273	0	lncRNA	TCONS_00008210	NA	NA	NA	NA	XLOC_003666	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003666), lincRNA [TCONS_00008210]"	chr4:119805778-119805837	hs|4q26	Agilent_HUMAN_G3V2	TCONS_00008210	TCONS_00008210	chr4	119805778	119805837	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30212_PI429285431	1.4335054	A	1.1801358	A	1.19198790750318	0	lncRNA	31987-1_{1..424}	n335059|AJ566384|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248864|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248864|-0.7915180|-0.1926006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335059|AJ566384|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248864|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248864|-0.7915180|-0.1926006	chr21	 45999253	 45999676	-	NA	NA	NA	NA	TSPEAR	NA	chr21:45989253-46009677	inner
CUST_8770_PI429285431	4.739171	P	5.0209994	P	0.82254790007776	0	lncRNA	10313-1_{1..2219}	lnc-MIB2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MIB2-1:4	chr1	  1544694	  1546912	+	lnc-MIB2-1	lnc-MIB2-1:4	ENSG00000245123	XLOC_000019	MIB2	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-51.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70chr1:1550795-1555864"	NA	inter
CUST_20863_PI429285431	0.9051144	A	0.888907	A	1.0112974532345	0	lncRNA	22494-1_{1..1717}	lnc-ESR2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ESR2-1:1	chr14	 64804616	 64806332	-	lnc-ESR2-1	lnc-ESR2-1:1	ENSG00000214770.2	RP11-544I20.2	ESR2	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90chr14:64794616-64805268"	NA	inter
LNCA_21_P0006874	2.3785858	A	1.1454755	A	2.35073237317732	0	lncRNA	TCONS_00018207	NA	NA	NA	NA	XLOC_008488	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008488), lincRNA [TCONS_00018207]"	chr10:60227284-60227343	hs|10q21.1	Agilent_HUMAN_G3V2	TCONS_00018207	TCONS_00018207	chr10	 60227284	 60227343	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012100	6.7105618	P	6.868539	P	0.896280864061308	0	lncRNA	ENST00000419719	NA	NA	NA	NA	XLOC_l2_008381	NA	ENST00000419719	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008381), lincRNA [TCONS_l2_00016043]"	chr2:186898317-186898258	hs|2q32.1	Agilent_HUMAN_G3V2	ENST00000419719	ENST00000419719	chr2	186898258	186898317	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011163	0.8765372	A	0.8757037	A	1.00057790509784	0	lncRNA	ENST00000422994	NA	BC040271	NA	Hs.559193	XLOC_l2_003860	NA	ENST00000422994	THC2612823	NA	"BROAD Institute lincRNA (XLOC_l2_003860), lincRNA [TCONS_l2_00007012]"	chr13:111749082-111749141	hs|13q34	Agilent_HUMAN_G3V2	ENST00000422994	ENST00000422994	chr13	111749082	111749141	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006642	2.4554563	A	1.8696738	A	1.50085281262023	0	lncRNA	ENST00000413339	NA	NA	NA	NA	XLOC_008355	NA	ENST00000413339	THC2636527	NA	"BROAD Institute lincRNA (XLOC_008355), lincRNA [TCONS_00017770]"	chr10:3876734-3876793	hs|10p15.1	Agilent_HUMAN_G3V2	ENST00000413339	ENST00000413339	chr10	  3876734	  3876793	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004233	0.9232751	A	0.96907955	A	0.968749489410741	0	lncRNA	TCONS_00009882	NA	NA	NA	NA	XLOC_004303	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004303), lincRNA [TCONS_00009882]"	chr5:16442350-16446046	hs|5p15.1	Agilent_HUMAN_G3V2	TCONS_00009882	TCONS_00009882	chr5	 16442350	 16446046	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004622	3.7023292	P	4.1258316	P	0.745612318226746	0	lncRNA	ENST00000458006	NA	NA	NA	NA	XLOC_005116	NA	ENST00000458006	NA	NA	"BROAD Institute lincRNA (XLOC_005116), lincRNA [TCONS_00011249]"	chr6:156548-156607	hs|6p25.3	Agilent_HUMAN_G3V2	ENST00000458006	ENST00000458006	chr6	   156548	   156607	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009773	1.7081895	A	3.4812932	P	0.292578629247417	0	lncRNA	TCONS_00027385	NA	NA	NA	NA	XLOC_013370	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013370), lincRNA [TCONS_00027385]"	chr19:47742617-47742558	hs|19q13.32	Agilent_HUMAN_G3V2	TCONS_00027385	TCONS_00027385	chr19	 47742558	 47742617	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010828	1.7937855	A	2.8364353	A	0.485435055158867	0	lncRNA	TCONS_l2_00003049	NA	NA	NA	NA	XLOC_l2_001592	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001592), lincRNA [TCONS_l2_00003049]"	chr10:48949304-48949363	hs|10q11.22	Agilent_HUMAN_G3V2	TCONS_l2_00003049	TCONS_l2_00003049	chr10	 48949304	 48949363	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48227_PI429285431	0.9262641	A	1.1716896	A	0.843566962752779	0	lncRNA	52090-1_{1..1954}	hg19_lincRNAsTranscripts_TCONS_l2_00001498 range=chr1:143231323-143272639 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001498 range=chr1:143231323-143272639 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	143231323	143233276	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_11932_PI429285431	1.4687672	A	1.9804722	A	0.701393030396517	0	lncRNA	13512-1_{1..2191}	lnc-GATA4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GATA4-1:1	chr8	 11504846	 11507036	+	lnc-GATA4-1	lnc-GATA4-1:1	XLOC_006712	linc-GATA4-1	NA	NA	NA	inter
CUST_20_PI429285431	5.247015	P	5.3850536	P	0.908753801978012	0	lncRNA	19-1_{1..836}	"transcript_id ""ENST00000522643.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522643.1"" | genecode_v17"	chr8	 37417884	 37418719	+	ENSG00000254111.1	ENST00000522643.1	RP11-150O12.5	RP11-150O12.5-001	NA	NA	NA	inter
CUST_32824_PI429285431	0.91861814	A	0.93912804	A	0.985884196191642	0	lncRNA	34459-1_{1..462}	n339472|AY524664|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1910|NULL|-1.0676700|-0.2247265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339472|AY524664|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1910|NULL|-1.0676700|-0.2247265	chr3	122709983	122710444	+	NA	NA	NA	NA	SEMA5B	NA	chr3:122699983-122720431	inter
CUST_14631_PI429285431	3.293558	P	3.174556	A	1.08598336181386	0	lncRNA	16302-1_{1..276}	lnc-FAM101A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM101A-1:2	chr12	124692595	124692870	+	lnc-FAM101A-1	lnc-FAM101A-1:2	XLOC_009928	linc-FAM101A-1	ZNF664-FAM101A	NA	chr12:124682595-124702817	inner
LNCA_21_P0013497	2.383399	A	2.036158	A	1.27212549561345	0	lncRNA	TCONS_l2_00027829	NA	NA	NA	NA	XLOC_l2_014245	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014245), lincRNA [TCONS_l2_00027829]"	chr8:69964552-69964611	hs|8q13.2	Agilent_HUMAN_G3V2	TCONS_l2_00027829	TCONS_l2_00027829	chr8	 69964552	 69964611	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29615_PI429285431	1.487325	A	1.9365009	A	0.732461126839316	0	lncRNA	31376-1_{1..237}	n333170|AF402618|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079122|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079122|-0.9491650|-0.1657257	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333170|AF402618|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079122|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079122|-0.9491650|-0.1657257	chr18	 23612319	 23612555	-	NA	NA	NA	NA	SS18	NA	chr18:23602319-23625029	inner
LNCA_21_P0009415	0.9018891	A	1.4245436	A	0.696089877196359	0	lncRNA	TCONS_00026158	NA	NA	NA	NA	XLOC_012572	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012572), lincRNA [TCONS_00026158]"	chr17:72087180-72057140	hs|17q25.1	Agilent_HUMAN_G3V2	TCONS_00026158	TCONS_00026158	chr17	 72057140	 72087180	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00804024	3.0728507	P	4.1172385	P	0.484850608608528	0	lncRNA	AB231702	NA	AB231702	NA	NA	OOSP1	oocyte-secreted protein 1 homolog	NA	NA	GO:0005576	"BROAD Institute lincRNA (XLOC_009140), lincRNA [TCONS_00019094]"	chr11:59737560-59737619	hs|11q12.1	Agilent_HUMAN_G3V2	AB231702	AB231702	chr11	 59737560	 59737619	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22018_PI429285431	3.097474	A	2.401474	A	1.62000694726409	0	lncRNA	23627-1_{1..590}	lnc-BTC-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BTC-4:1	chr4	 75959984	 75960573	-	lnc-BTC-4	lnc-BTC-4:1	ENSG00000248165.1	RP11-44F21.2	PARM1	NA	chr4:75949984-75970034	inner
CUST_373_PI429285431	1.0140876	A	0.9025769	A	1.08035892869505	0	lncRNA	365-1_{1..436}	"transcript_id ""ENST00000434879.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434879.1"" | genecode_v17"	chr1	116995657	116996092	-	ENSG00000233154.1	ENST00000434879.1	RP4-655J12.4	RP4-655J12.4-004	NA	NA	NA	inter
CUST_36811_PI429285431	2.307145	A	0.9018002	A	2.64881080337448	0	lncRNA	37983-1_{1..3000}	n345291|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_840|NULL|-1.3577200|-0.4499959	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345291|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_840|NULL|-1.3577200|-0.4499959	chr15	 35473212	 35476211	-	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-14.90"	NA	inter
CUST_4048_PI429285431	8.85684	P	8.595458	P	1.1986263542761	0	lncRNA	4010-1_{1..504}	"transcript_id ""ENST00000526509.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526509.1"" | genecode_v17"	chr11	 90891251	 90891754	+	ENSG00000255187.1	ENST00000526509.1	RP11-699F16.2	RP11-699F16.2-001	NA	NA	NA	inter
CUST_24048_PI429285431	3.807174	P	3.9839177	P	0.884697591103249	0	lncRNA	25600-1_{1..723}	lnc-NEK3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-NEK3-1:2	chr13	 52908062	 52908784	-	lnc-NEK3-1	lnc-NEK3-1:2	ENSG00000217576.4	RP11-64P12.8	LOC100652836	NA	chr13:52898062-52908484	inter
CUST_27448_PI429285431	0.89805245	A	1.5956022	A	0.616618572898978	0	lncRNA	29018-1_{1..2237}	n324624|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000132743|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000132743|-1.2365800|-0.2927637	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324624|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000132743|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000132743|-1.2365800|-0.2927637	chr5	142105348	142107584	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48312_PI429285431	6.3294625	P	6.832061	P	0.705834327073521	0	lncRNA	52170-1_{1..1073}	hg19_lincRNAsTranscripts_TCONS_l2_00000154 range=chr1:22351989-22357704 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000154 range=chr1:22351989-22357704 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 22351989	 22353061	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009871	3.243744	P	3.8778315	P	0.644348234093222	0	lncRNA	ENST00000458368	NA	NA	NA	NA	XLOC_013614	NA	ENST00000458368	THC2684167	NA	"BROAD Institute lincRNA (XLOC_013614), lincRNA [TCONS_00027983]"	chr20:62136405-62136464	hs|20q13.33	Agilent_HUMAN_G3V2	ENST00000458368	ENST00000458368	chr20	 62136405	 62136464	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44779_PI429285431	1.4232088	A	0.9042213	A	1.43294923476029	0	lncRNA	49318-1_{1..587}	"gi|310119795|ref|XR_108621.1| PREDICTED: Homo sapiens uncharacterized LOC100507367 (LOC100507367), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|310119795|ref|XR_108621.1| PREDICTED: Homo sapiens uncharacterized LOC100507367 (LOC100507367), misc_RNA"	Chr6	 72017644	 72018230	-	100507367	XR_108621.2	NA	NA	NA	NA	NA	inter
CUST_5961_PI429285431	1.2547296	A	1.3316782	A	0.94806074181234	0	lncRNA	5890-1_{1..578}	"transcript_id ""ENST00000540802.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000540802.1"" | genecode_v17"	chr17	 70030248	 70030825	-	ENSG00000254148.3	ENST00000540802.1	RP11-84E24.2	RP11-84E24.2-002	NA	NA	NA	inter
CUST_26578_PI429285431	0.89739025	A	0.88783	A	1.006648665226	0	lncRNA	28082-1_{1..453}	lnc-RIMKLB-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RIMKLB-2:1	chr12	  8821229	  8821681	+	lnc-RIMKLB-2	lnc-RIMKLB-2:1	ENSG00000255829.1	RP11-20D14.3	MFAP5	NA	chr12:8811229-8815433	inter
CUST_16527_PI429285431	1.0353081	A	2.0486634	A	0.49539276365905	0	lncRNA	18226-1_{1..359}	lnc-SLC15A4-12:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC15A4-12:2	chr12	127759994	127760352	-	lnc-SLC15A4-12	lnc-SLC15A4-12:2	XLOC_010251	linc-DHX37-16	NA	NA	NA	inter
CUST_17533_PI429285431	0.9020509	A	1.3261056	A	0.74532693368066	0	lncRNA	19258-1_{1..547}	lnc-MGST2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MGST2-1:1	chr4	140499565	140500111	+	lnc-MGST2-1	lnc-MGST2-1:1	XLOC_003712	linc-MGST2	NA	NA	NA	inter
CUST_30090_PI429285431	0.8988299	A	0.88466215	A	1.00986871369881	0	lncRNA	31862-1_{1..386}	n334626|U85452|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221941|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221941|-1.1259400|-0.3116733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334626|U85452|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221941|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221941|-1.1259400|-0.3116733	chr14	 22631525	 22631910	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13054_PI429285431	0.97947115	A	1.0896121	A	0.926497539497244	0	lncRNA	14679-1_{1..548}	lnc-C1orf186-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf186-1:1	chr1	206306069	206306616	-	lnc-C1orf186-1	lnc-C1orf186-1:1	XLOC_001171	linc-C1orf186	NA	NA	NA	inter
CUST_32744_PI429285431	7.013427	P	9.066582	M	0.240956562698323	0	lncRNA	34381-1_{1..2027}	n339369|AX746575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1801|NULL|1.0278300|-0.1936019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339369|AX746575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1801|NULL|1.0278300|-0.1936019	chr3	 52844727	 52846753	-	NA	NA	NA	NA	ITIH4	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10chr3:52847006-52856754"	NA	inter
CUST_30578_PI429285431	1.1871665	A	1.3917577	A	0.867784546503166	0	lncRNA	32360-1_{1..340}	n335823|X56524|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322026|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322026|2.5696700|-0.1014989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335823|X56524|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322026|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322026|2.5696700|-0.1014989	chr14	106610296	106610635	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014932	3.5113323	P	4.000545	P	0.712413766456226	0	lncRNA	XR_133300	XR_133300	XR_133300	NA	Hs.442789	LOC100507006	uncharacterized LOC100507006	NA	THC2602660	NA	"PREDICTED: Homo sapiens hypothetical LOC100507006 (LOC100507006), miscRNA [XR_133300]"	chr2:64478778-64478837	hs|2p14	Agilent_HUMAN_G3V2	XR_133300	XR_133300	chr2	 64478778	 64478837	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6652_PI429285431	2.377232	A	2.5979517	P	0.858137240992318	0	lncRNA	6598-1_{1..632}	"transcript_id ""ENST00000425405.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000425405.1"" | genecode_v17"	chr20	 17868007	 17868638	-	ENSG00000233625.1	ENST00000425405.1	RP5-905G11.3	RP5-905G11.3-001	NA	NA	NA	inter
CUST_22596_PI429285431	2.6371396	A	2.1916363	A	1.36178910871907	0	lncRNA	24180-1_{1..885}	lnc-STOML1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STOML1-1:4	chr15	 74220118	 74221002	-	lnc-STOML1-1	lnc-STOML1-1:4	ENSG00000261801.1	RP11-941F15.1	LOXL1	"hg19_refFlat_LOXL1:range=chr15:74219125-742441785'pad=0,hg19_refFlat_LOXL1:range=chr15:74219125-742441785'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30chr15:74218789-74230300"	NA	inner
CUST_38425_PI429285431	0.92565835	A	0.9796574	A	0.963262528318509	0	lncRNA	39452-2_{3001..4349}	n382510|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zqm.2||-0.1914180|-0.3700847	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n382510|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zqm.2||-0.1914180|-0.3700847	chr15	 43033612	 43034960	+	NA	NA	NA	NA	TTBK2	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70chr15:43036536-43045399"	NA	inter
CUST_42988_PI429285431	5.3468895	P	5.8937793	P	0.684494189514057	0	lncRNA	46145-1_{1..75}	ENST00000516391 ncrna:snoRNA chromosome:GRCh37:19:45229248:45229322:-1 gene:ENSG00000252200 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516391 ncrna:snoRNA chromosome:GRCh37:19:45229248:45229322:-1 gene:ENSG00000252200 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	 45229248	 45229322	-	ENSG00000252200	ENST00000516391	NA	NA	NA	NA	NA	inter
CUST_45103_PI429285431	7.325354	P	7.19602	P	1.09378865245264	0	lncRNA	49585-2_{3001..3369}	"gi|224549007|ref|NR_027237.1| Homo sapiens zinc finger protein pseudogene (LOC728743), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224549007|ref|NR_027237.1| Homo sapiens zinc finger protein pseudogene (LOC728743), non-coding RNA"	Chr7	150105840	150106208	+	728743	NR_027237.1	NA	NA	NA	NA	NA	inter
CUST_27231_PI429285431	1.3320287	A	1.6550692	A	0.799383389378614	0	lncRNA	28776-1_{1..490}	n324367|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042465|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042465|-0.9895350|-0.1621886	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324367|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042465|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042465|-0.9895350|-0.1621886	chr6	139832993	139833482	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31157_PI429285431	10.942037	P	11.03351	P	0.93856398057814	0	lncRNA	32952-1_{1..283}	n337537|EF217322|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395417|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395417|0.1395160|-0.1037976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337537|EF217322|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395417|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395417|0.1395160|-0.1037976	chr22	 19950160	 19950442	+	NA	NA	NA	NA	COMT	NA	chr22:19940160-19957498	inner
CUST_17089_PI429285431	4.407626	P	5.2973785	P	0.539706699114444	0	lncRNA	18797-1_{1..886}	lnc-DMRTA2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRTA2-2:1	chr1	 50745707	 50746592	-	lnc-DMRTA2-2	lnc-DMRTA2-2:1	XLOC_000831	linc-AGBL4-2	NA	NA	NA	inter
CUST_41942_PI429285431	0.90619713	A	0.9085818	A	0.998348438044874	0	lncRNA	43700-1_{1..79}	ENST00000401237 ncrna:miRNA chromosome:GRCh37:X:145109312:145109390:-1 gene:ENSG00000216056 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401237 ncrna:miRNA chromosome:GRCh37:X:145109312:145109390:-1 gene:ENSG00000216056 gene_biotype:miRNA transcript_biotype:miRNA	chrX	145109312	145109390	-	ENSG00000216056	ENST00000401237	NA	NA	NA	NA	NA	inter
CUST_42322_PI429285431	3.6542642	P	4.1569624	P	0.705785550825672	0	lncRNA	44960-1_{1..81}	ENST00000458838 ncrna:snoRNA chromosome:GRCh37:9:33934294:33934374:-1 gene:ENSG00000238300 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000458838 ncrna:snoRNA chromosome:GRCh37:9:33934294:33934374:-1 gene:ENSG00000238300 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	 33934294	 33934374	-	ENSG00000238300	ENST00000458838	NA	NA	UBAP2	NA	chr9:33924294-33944374	inner
LNCA_21_P0004578	0.9131588	A	0.92991817	A	0.988450503394712	0	lncRNA	TCONS_00011079	NA	NA	NA	NA	XLOC_005070	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005070), lincRNA [TCONS_00011079]"	chr5:163875374-163875315	hs|5q34	Agilent_HUMAN_G3V2	TCONS_00011079	TCONS_00011079	chr5	163875315	163875374	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005888	1.6476756	A	2.5076375	A	0.550967108185616	0	lncRNA	TCONS_00015143	NA	NA	NA	NA	XLOC_007188	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007188), lincRNA [TCONS_00015143]"	chr8:118421466-118421407	hs|8q24.11	Agilent_HUMAN_G3V2	TCONS_00015143	TCONS_00015143	chr8	118421407	118421466	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43298_PI429285431	2.279459	A	2.313003	A	0.977017291015622	0	lncRNA	48116-2_{3001..3217}	ENST00000553913 havana:sense_overlapping chromosome:GRCh37:14:96129593:96158967:1 gene:ENSG00000259084 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,ensembl.GRCh37.72,"	>ENST00000553913 havana:sense_overlapping chromosome:GRCh37:14:96129593:96158967:1 gene:ENSG00000259084 gene_biotype:sense_overlapping transcript_biotype:sense_overlapping	chr14	 96132593	 96132809	+	ENSG00000259084	ENST00000553913	NA	NA	TCL1B	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60chr14:96152754-96158980"	NA	inner
LNCA_21_P0008081	2.3324513	A	0.9083149	A	2.68353815362494	0	lncRNA	TCONS_00021823	NA	NA	NA	NA	XLOC_010424	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010424), lincRNA [TCONS_00021823]"	chr13:72745269-72747689	hs|13q21.33	Agilent_HUMAN_G3V2	TCONS_00021823	TCONS_00021823	chr13	 72745269	 72747689	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011698	2.1042988	A	1.6598961	A	1.36075062622553	0	lncRNA	TCONS_l2_00012523	NA	NA	NA	NA	XLOC_l2_006718	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006718), lincRNA [TCONS_l2_00012523]"	chr19:37759086-37759145	hs|19q13.12	Agilent_HUMAN_G3V2	TCONS_l2_00012523	TCONS_l2_00012523	chr19	 37759086	 37759145	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48045_PI429285431	1.0551027	A	1.61028	A	0.680573414043722	0	lncRNA	51925-1_{1..3000}	"gi|410170029|ref|XR_133245.3| PREDICTED: Homo sapiens TTLL10 antisense RNA 1 (TTLL10-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410170029|ref|XR_133245.3| PREDICTED: Homo sapiens TTLL10 antisense RNA 1 (TTLL10-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_133245.3	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80"	NA	Unknown
LNCA_21_P0006882	6.982303	P	7.0972714	P	0.923402536210008	0	lncRNA	TCONS_00018246	NA	NA	NA	NA	XLOC_008522	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008522), lincRNA [TCONS_00018246]"	chr10:77189449-77189508	hs|10q22.2	Agilent_HUMAN_G3V2	TCONS_00018246	TCONS_00018246	chr10	 77189449	 77189508	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003277	0.8858875	A	0.8912301	A	0.996303640292041	0	lncRNA	TCONS_00007109	NA	NA	NA	NA	XLOC_003031	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003031), lincRNA [TCONS_00007109]"	chr3:7925493-7925434	hs|3p26.1	Agilent_HUMAN_G3V2	TCONS_00007109	TCONS_00007109	chr3	  7925434	  7925493	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49175_PI429285431	7.2347217	P	7.6160192	P	0.767746800471228	0	lncRNA	52999-1_{1..273}	hg19_lincRNAsTranscripts_TCONS_l2_00021319 range=chr4:142228781-142237891 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021319 range=chr4:142228781-142237891 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	142228781	142229053	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_28298_PI429285431	0.90599203	A	0.91437274	A	0.994207774489451	0	lncRNA	29941-1_{1..2403}	n325601|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000072602|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000072602|0.0745028|-0.1624586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325601|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000072602|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000072602|0.0745028|-0.1624586	chr14	100606576	100608978	+	NA	NA	NA	NA	EVL	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60chr14:100596576-100610573"	NA	inner
CUST_50347_PI429285431	0.93032765	A	1.9216168	A	0.503028082992359	0	lncRNA	54061-1_{1..247}	hg19_lincRNAsTranscripts_TCONS_l2_00029621 range=chr9:136101447-136103334 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029621 range=chr9:136101447-136103334 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	136101447	136101693	-	NA	NA	NA	NA	ABO	NA	chr9:136100292-136113334	inter
CUST_36738_PI429285431	4.296255	P	4.5521903	P	0.837444043203237	0	lncRNA	37913-1_{1..601}	n345220|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_769|NULL|-1.4860700|-0.2963028	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345220|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_769|NULL|-1.4860700|-0.2963028	chr13	 41052731	 41053331	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011269	0.88088125	A	0.8746533	A	1.00432621715784	0	lncRNA	THC2666914	NA	NA	NA	NA	XLOC_l2_004385	NA	NA	THC2666914	NA	"BROAD Institute lincRNA (XLOC_l2_004385), lincRNA [TCONS_l2_00008040]"	chr14:042053190-042053131	hs|14q21.1	Agilent_HUMAN_G3V2	THC2666914	THC2666914	chr14	 42053131	 42053190	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14693_PI429285431	2.758891	A	3.1177416	A	0.779785590054071	0	lncRNA	16360-3_{6001..9000}	lnc-NAP1L2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-NAP1L2-1:6	chrX	 73067217	 73070216	-	lnc-NAP1L2-1	lnc-NAP1L2-1:6	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90"	NA	inter
CUST_44786_PI429285431	3.3901699	P	1.9160533	A	2.77813479398158	0	lncRNA	49325-1_{1..3000}	"gi|259013566|ref|NR_028493.1| Homo sapiens LYR motif containing 2 (LYRM2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|259013566|ref|NR_028493.1| Homo sapiens LYR motif containing 2 (LYRM2), transcript variant 2, non-coding RNA"	Chr6	 90341943	 90344942	-	57226	NR_028493.1	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60"	NA	inter
LNCA_21_P0007116	0.88346523	A	0.87527174	A	1.00569545225917	0	lncRNA	TCONS_00019037	NA	NA	NA	NA	XLOC_008963	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008963), lincRNA [TCONS_00019037]"	chr10:119585653-119585594	hs|10q26.11	Agilent_HUMAN_G3V2	TCONS_00019037	TCONS_00019037	chr10	119585594	119585653	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38477_PI429285431	0.9168955	A	1.5752041	A	0.633620711742689	0	lncRNA	39495-1_{1..1161}	n382975|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ecx.2||2.4594600|-0.2569150	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n382975|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ecx.2||2.4594600|-0.2569150	chr16	 32162609	 32163769	-	NA	NA	NA	NA	NA	"hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10"	NA	inter
CUST_18815_PI429285431	3.451512	P	4.1717434	P	0.607000075062776	0	lncRNA	20509-1_{1..568}	lnc-CHST1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHST1-5:1	chr11	 45563994	 45564561	-	lnc-CHST1-5	lnc-CHST1-5:1	ENSG00000254746	RP11-958J22.1	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10"	NA	inter
LNCA_21_P0006835	5.019738	P	4.877047	P	1.1039623724422	0	lncRNA	TCONS_00018121	NA	NA	NA	NA	XLOC_008382	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008382), lincRNA [TCONS_00018121]"	chr10:8139117-8139176	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018121	TCONS_00018121	chr10	  8139117	  8139176	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008784	8.107291	P	8.45253	P	0.787177560219328	0	lncRNA	ENST00000557545	NA	NA	NA	NA	XLOC_011586	NA	ENST00000557545	THC2661810	NA	"BROAD Institute lincRNA (XLOC_011586), lincRNA [TCONS_00023793]"	chr15:93331497-93331438	hs|15q26.1	Agilent_HUMAN_G3V2	ENST00000557545	ENST00000557545	chr15	 93331438	 93331497	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24225_PI429285431	2.394792	A	2.350435	A	1.03122346712585	0	lncRNA	25776-1_{1..435}	lnc-C11orf36-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf36-1:1	chr11	  3253843	  3254277	+	lnc-C11orf36-1	lnc-C11orf36-1:1	ENSG00000224513.2	AC109309.4	MRGPRE	NA	chr11:3249041-3253616	inter
CUST_42336_PI429285431	9.258802	P	9.262487	P	0.997449011953803	0	lncRNA	44993-1_{1..148}	ENST00000384214 ncrna:snoRNA chromosome:GRCh37:11:75111435:75111582:1 gene:ENSG00000206941 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384214 ncrna:snoRNA chromosome:GRCh37:11:75111435:75111582:1 gene:ENSG00000206941 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	 75111435	 75111582	+	ENSG00000206941	ENST00000384214	NA	NA	RPS3	NA	chr11:75110562-75116733	inner
CUST_7544_PI429285431	0.96008605	A	1.0453349	A	0.942621929343593	0	lncRNA	9180-2_{3001..5996}	lnc-WISP3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WISP3-3:1	chr6	111991172	111994167	+	lnc-WISP3-3	lnc-WISP3-3:1	ENSG00000249573	ENST00000511411	FYN	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FYN:range=chr6:111982942-1120412545'pad=0,hg19_refFlat_FYN:range=chr6:111982942-1120412545'pad=0 3'pad=0 strand=- repeatMasking=none,-99.00chr6:111982479-111999478"	NA	inner
CUST_10052_PI429285431	5.1044426	P	6.0559297	P	0.51709917205934	0	lncRNA	11577-1_{1..898}	lnc-BAI3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BAI3-2:1	chr6	 68819840	 68820737	+	lnc-BAI3-2	lnc-BAI3-2:1	XLOC_005339	linc-BAI3-1	NA	NA	NA	inter
LNCA_33_P3210483	0.92062235	A	0.9669359	A	0.968407696209471	0	lncRNA	ENST00000312019	XR_109256	XR_109256	NA	Hs.617179	NA	NA	ENST00000312019	THC2484346	NA	"PREDICTED: Homo sapiens hCG1983896 (FLJ32790), miscRNA [XR_109256]"	chr16:12180702-12180643	hs|16p13.13	Agilent_HUMAN_G3V2	ENST00000312019	ENST00000312019	chr16	 12180643	 12180702	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006608	2.5193384	A	2.5697677	A	0.965648939862615	0	lncRNA	TCONS_00017641	NA	NA	NA	NA	XLOC_008299	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008299), lincRNA [TCONS_00017641]"	chrY:23331928-23331987	hs|Yq11.223	Agilent_HUMAN_G3V2	TCONS_00017641	TCONS_00017641	chrY	 23331928	 23331987	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007471	1.2011749	A	1.9047928	A	0.614030447331603	0	lncRNA	ENST00000527533	NA	NA	NA	NA	XLOC_009585	NA	ENST00000527533	THC2731334	NA	"BROAD Institute lincRNA (XLOC_009585), lincRNA [TCONS_00020146]"	chr11:123184450-123184391	hs|11q24.1	Agilent_HUMAN_G3V2	ENST00000527533	ENST00000527533	chr11	123184391	123184450	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005534	6.7752223	P	6.734316	P	1.02875988993875	0	lncRNA	TCONS_00013981	NA	NA	NA	NA	XLOC_006623	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006623), lincRNA [TCONS_00013981]"	chr7:140774677-140773375	hs|7q34	Agilent_HUMAN_G3V2	TCONS_00013981	TCONS_00013981	chr7	140773375	140774677	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30057_PI429285431	1.6511976	A	1.6158061	A	1.02483489179602	0	lncRNA	31826-1_{1..238}	n334567|U61736|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220694|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220694|1.3336900|-0.1795188	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334567|U61736|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220694|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220694|1.3336900|-0.1795188	chr2	 84852014	 84852251	+	NA	NA	NA	NA	DNAH6	NA	chr2:84842014-84871693	inner
CUST_47489_PI429285431	1.4389005	A	0.89972156	A	1.45314527455517	0	lncRNA	51508-1_{1..3000}	"gi|397139768|ref|XR_109755.2| PREDICTED: Homo sapiens uncharacterized LOC100507657 (LOC100507657), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|397139768|ref|XR_109755.2| PREDICTED: Homo sapiens uncharacterized LOC100507657 (LOC100507657), misc_RNA"	Chr22	 27706612	 27709611	+	100507657	XR_109755.3	NA	NA	NA	NA	NA	inter
CUST_31870_PI429285431	7.4528074	P	6.168858	P	2.43504663083548	0	lncRNA	33602-1_{1..765}	n338422|CR616151|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|819|NULL|-1.1560600|-0.3969129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338422|CR616151|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|819|NULL|-1.1560600|-0.3969129	chr14	 77972380	 77973144	-	NA	NA	NA	NA	SPTLC2	NA	chr14:77972340-77983145	inner
CUST_49781_PI429285431	6.1461854	P	6.4348874	P	0.818638260294938	0	lncRNA	53541-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00026596 range=chr7:57283852-57290593 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026596 range=chr7:57283852-57290593 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr7	 57283852	 57286851	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2792_PI429285431	1.1452951	A	1.3068829	A	0.894040566908582	0	lncRNA	2776-1_{1..674}	"transcript_id ""ENST00000430537.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000430537.1"" | genecode_v17"	chr7	 30216003	 30216676	-	ENSG00000227017.1	ENST00000430537.1	AC007036.6	AC007036.6-001	NA	NA	NA	inter
CUST_19857_PI429285431	2.4649417	A	2.6576076	A	0.874987371434426	0	lncRNA	21514-1_{1..439}	lnc-ENO3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ENO3-2:1	chr17	  4877655	  4878093	+	lnc-ENO3-2	lnc-ENO3-2:1	ENSG00000234203.1	RP5-1050D4.2	SPAG7	"hg19_refFlat_CAMTA2:range=chr17:4872001-48902535'pad=0,hg19_refFlat_CAMTA2:range=chr17:4872001-48902535'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20;hg19_refFlat_CAMTA2:range=chr17:4872051-48909245'pad=0,hg19_refFlat_CAMTA2:range=chr17:4872051-48909245'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20;hg19_refFlat_CAMTA1:range=chr1:6845591-78265515'pad=0,hg19_refFlat_CAMTA1:range=chr1:6845591-78265515'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_CAMTA2:range=chr17:4872051-48895175'pad=0,hg19_refFlat_CAMTA2:range=chr17:4872051-48895175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20;hg19_refFlat_CAMTA2:range=chr17:4872051-48902535'pad=0,hg19_refFlat_CAMTA2:range=chr17:4872051-48902535'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20chr17:4867655-4871132"	NA	inner
CUST_48633_PI429285431	1.2664416	A	0.8873561	A	1.30051721822625	0	lncRNA	52480-1_{1..599}	hg19_lincRNAsTranscripts_TCONS_l2_00013766 range=chr2:89087835-89104014 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013766 range=chr2:89087835-89104014 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 89087835	 89088433	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36832_PI429285431	2.9248095	A	3.1051574	A	0.882490161741669	0	lncRNA	37998-1_{1..1681}	n345306|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_855|NULL|-1.3823800|-0.4216415	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345306|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_855|NULL|-1.3823800|-0.4216415	chr15	 62710309	 62711989	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10375_PI429285431	1.0736063	A	1.5702425	A	0.708757400909739	0	lncRNA	11903-1_{1..209}	lnc-FRG1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRG1-4:1	chr4	190471557	190471765	+	lnc-FRG1-4	lnc-FRG1-4:1	XLOC_003840	linc-FRG1-4	NA	NA	NA	inter
LNCA_21_P0007837	2.3704405	A	2.9746614	P	0.657826530896193	0	lncRNA	TCONS_00021133	NA	NA	NA	NA	XLOC_009756	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009756), lincRNA [TCONS_00021133]"	chr12:52606758-52607269	hs|12q13.13	Agilent_HUMAN_G3V2	TCONS_00021133	TCONS_00021133	chr12	 52606758	 52607269	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36966_PI429285431	0.8895018	A	0.88792765	A	1.00109171311969	0	lncRNA	38112-1_{1..1962}	n345428|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_977|NULL|-1.3215600|-0.3738456	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345428|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_977|NULL|-1.3215600|-0.3738456	chr1	 22422078	 22424039	-	NA	NA	NA	NA	CDC42	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90chr1:22412078-22419436"	NA	inter
LNCA_21_P0002156	3.5947578	P	4.161062	P	0.675344627211037	0	lncRNA	TCONS_00003535	NA	NA	NA	NA	XLOC_001309	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001309), lincRNA [TCONS_00003535]"	chr2:665445-665504	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00003535	TCONS_00003535	chr2	   665445	   665504	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005717	0.8808492	A	0.8756815	A	1.00358839963012	0	lncRNA	TCONS_00014754	NA	NA	NA	NA	XLOC_006838	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006838), lincRNA [TCONS_00014754]"	chr8:72464063-72464750	hs|8q13.3	Agilent_HUMAN_G3V2	TCONS_00014754	TCONS_00014754	chr8	 72464063	 72464750	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006474	11.137406	P	11.566176	P	0.742894886054237	0	lncRNA	TCONS_00017112	NA	NA	NA	NA	XLOC_007909	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007909), lincRNA [TCONS_00017112]"	chrX:396377-398348	hs|Xp22.33	Agilent_HUMAN_G3V2	TCONS_00017112	TCONS_00017112	chrX	   396377	   398348	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43059_PI429285431	6.0995693	P	6.546207	P	0.733750913778371	0	lncRNA	46853-1_{1..126}	ENST00000388104 ncrna:snRNA chromosome:GRCh37:4:73892465:73892590:1 gene:ENSG00000210839 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000388104 ncrna:snRNA chromosome:GRCh37:4:73892465:73892590:1 gene:ENSG00000210839 gene_biotype:snRNA transcript_biotype:snRNA	chr4	 73892465	 73892590	+	ENSG00000210839	ENST00000388104	NA	NA	NA	NA	NA	inter
CUST_584_PI429285431	0.8952048	A	0.888682	A	1.0045314967485	0	lncRNA	576-1_{1..316}	"transcript_id ""ENST00000455363.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455363.1"" | genecode_v17"	chr1	222626082	222626397	-	ENSG00000226643.1	ENST00000455363.1	RP11-358H9.1	RP11-358H9.1-001	NA	NA	NA	inter
CUST_40843_PI429285431	12.960547	P	12.836418	P	1.08984955782979	0	lncRNA	41546-1_{1..1316}	n410615|NR_037860_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037860_7||-1.0886700|-0.2458194	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410615|NR_037860_7|lncRNA|Homosapiens||RefGeneNoncode|NR_037860_7||-1.0886700|-0.2458194	chr6	  3603062	  3604377	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_50928_PI429285431	0.89871967	A	0.89648616	A	1.00154935016393	0	lncRNA	54569-1_{1..1063}	hg19_lincRNAsTranscripts_TCONS_l2_00005569 range=chr12:27282536-27350376 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005569 range=chr12:27282536-27350376 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 27282536	 27283598	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27398_PI429285431	2.8502645	A	0.92164814	A	3.80689917261824	0	lncRNA	28961-2_{3001..4732}	n324562|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040121|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040121|0.3137500|-0.3008761	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324562|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040121|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040121|0.3137500|-0.3008761	chr6	 26633054	 26634785	+	NA	NA	NA	NA	ZNF322A	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70chr6:26631313-26644786"	NA	inner
CUST_36663_PI429285431	1.2476349	A	0.8820773	A	1.28837949050675	0	lncRNA	37853-1_{1..773}	n345158|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_707|NULL|-1.4198800|-0.0936998	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345158|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_707|NULL|-1.4198800|-0.0936998	chr11	133778458	133779230	+	NA	NA	NA	NA	IGSF9B	NA	chr11:133785185-133791903	inter
CUST_1411_PI429285431	3.5548122	P	3.1442995	P	1.32915808180121	0	lncRNA	1400-1_{1..448}	"transcript_id ""ENST00000599431.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000599431.1"" | genecode_v17"	chr3	106991477	106991924	-	ENSG00000239828.2	ENST00000599431.1	RP11-446H18.5	RP11-446H18.5-008	CCDC54	NA	chr3:107046680-107097481	inter
CUST_31066_PI429285431	6.140548	P	5.904284	P	1.1779383218156	0	lncRNA	32856-1_{1..219}	n337297|BC128523|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389888|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389888|-0.0450317|-0.1467669	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337297|BC128523|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389888|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389888|-0.0450317|-0.1467669	chr9	139648852	139649070	-	NA	NA	NA	NA	LCN6	NA	chr9:139638852-139642980	inner
CUST_3615_PI429285431	1.1268218	A	1.8311673	A	0.613720849045413	0	lncRNA	3585-1_{1..901}	"transcript_id ""ENST00000413941.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413941.1"" | genecode_v17"	chr10	  8340860	  8341760	+	ENSG00000226861.1	ENST00000413941.1	RP5-1119O21.2	RP5-1119O21.2-001	NA	NA	NA	inter
LNCA_21_P0007454	0.8719944	A	0.87327945	A	0.999109667796748	0	lncRNA	TCONS_00020019	NA	NA	NA	NA	XLOC_009323	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009323), lincRNA [TCONS_00020019]"	chr11:126923521-126923580	hs|11q24.2	Agilent_HUMAN_G3V2	TCONS_00020019	TCONS_00020019	chr11	126923521	126923580	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49363_PI429285431	2.6866632	A	2.7206504	A	0.976717194636037	0	lncRNA	53176-1_{1..241}	hg19_lincRNAsTranscripts_TCONS_l2_00022450 range=chr5:98264907-98297278 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022450 range=chr5:98264907-98297278 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 98264907	 98265147	+	NA	NA	NA	NA	CHD1	NA	chr5:98254907-98262238	inter
CUST_1457_PI429285431	1.363889	A	1.792129	A	0.743167852003377	0	lncRNA	1446-1_{1..800}	"transcript_id ""ENST00000600712.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600712.1"" | genecode_v17"	chr3	125605679	125606478	-	ENSG00000241288.2	ENST00000600712.1	RP11-379B18.5	RP11-379B18.5-003	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40"	NA	inter
LNCA_33_P3286722	0.9228799	A	0.9590273	A	0.975255814653663	0	lncRNA	XR_109177	XR_109177	XR_109177	   390660	Hs.640255	LOC390660	FLJ00317 protein	NA	NA	NA	"PREDICTED: Homo sapiens FLJ00317 protein (LOC390660), miscRNA [XR_109177]"	chr15:82599577-82599636	hs|15q25.2	Agilent_HUMAN_G3V2	XR_109177	XR_109177	chr15	 82599577	 82599636	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009214	0.9233228	A	0.9743717	A	0.965234307799721	0	lncRNA	TCONS_00025292	NA	NA	NA	NA	XLOC_012093	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012093), lincRNA [TCONS_00025292]"	chr17:5677478-5677537	hs|17p13.2	Agilent_HUMAN_G3V2	TCONS_00025292	TCONS_00025292	chr17	  5677478	  5677537	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005785	11.661093	P	11.838469	P	0.884309933487401	0	lncRNA	TCONS_00014902	NA	NA	NA	NA	XLOC_006973	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006973), lincRNA [TCONS_00014902]"	chr8:1376610-1376551	hs|8p23.3	Agilent_HUMAN_G3V2	TCONS_00014902	TCONS_00014902	chr8	  1376551	  1376610	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012118	5.8997326	P	6.6046314	P	0.613485520976429	0	lncRNA	TCONS_l2_00016224	NA	NA	NA	NA	XLOC_l2_008599	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008599), lincRNA [TCONS_l2_00016224]"	chr20:25990491-26031378	hs|20p11.1	Agilent_HUMAN_G3V2	TCONS_l2_00016224	TCONS_l2_00016224	chr20	 25990491	 26031378	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42812_PI429285431	4.2265277	P	4.480585	P	0.838534879410131	0	lncRNA	45818-1_{1..73}	ENST00000364830 ncrna:snoRNA chromosome:GRCh37:14:101396256:101396328:1 gene:ENSG00000201700 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364830 ncrna:snoRNA chromosome:GRCh37:14:101396256:101396328:1 gene:ENSG00000201700 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101396256	101396328	+	ENSG00000201700	ENST00000364830	NA	NA	NA	NA	NA	inter
CUST_7523_PI429285431	0.92059875	A	1.0822588	A	0.893995794581989	0	lncRNA	9162-1_{1..2475}	lnc-FMNL1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FMNL1-1:2	chr17	 43344783	 43347257	+	lnc-FMNL1-1	lnc-FMNL1-1:2	ENSG00000229966	ENST00000438044	MAP3K14	"hg19_refFlat_MAP3K14:range=chr17:43342003-433681115'pad=0,hg19_refFlat_MAP3K14:range=chr17:43342003-433681115'pad=0 3'pad=0 strand=- repeatMasking=none,-101.40chr17:43340488-43355426"	NA	inner
CUST_14928_PI429285431	5.2342277	P	6.097805	P	0.549588110842529	0	lncRNA	16591-1_{1..285}	lnc-NDUFS5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDUFS5-1:1	chr1	 39509846	 39510130	+	lnc-NDUFS5-1	lnc-NDUFS5-1:1	XLOC_000152	linc-MACF1-2	NDUFS5	NA	chr1:39499846-39500308	inter
CUST_45753_PI429285431	1.4239208	A	1.5906092	A	0.890885297387914	0	lncRNA	50101-2_{3001..6000}	"gi|157787204|ref|NR_003945.1| Homo sapiens GTPase, very large interferon inducible pseudogene 1 (GVINP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|157787204|ref|NR_003945.1| Homo sapiens GTPase, very large interferon inducible pseudogene 1 (GVINP1), non-coding RNA"	Chr11	  6737370	  6740369	-	387751	NR_003945.1	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90"	NA	inter
LNCA_21_P0005036	9.833759	P	11.08569	P	0.419885827936615	0	lncRNA	TCONS_00012216	NA	NA	NA	NA	XLOC_005774	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005774), lincRNA [TCONS_00012216]"	chr6:82553560-82553501	hs|6q14.1	Agilent_HUMAN_G3V2	TCONS_00012216	TCONS_00012216	chr6	 82553501	 82553560	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19450_PI429285431	2.3566005	A	3.0178957	A	0.632310376456776	0	lncRNA	21109-1_{1..1960}	lnc-SCCPDH-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SCCPDH-2:1	chr1	246770913	246772872	+	lnc-SCCPDH-2	lnc-SCCPDH-2:1	ENSG00000225300.1	RP11-439E19.1	CNST	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80chr1:246760913-246781404"	NA	inner
CUST_30291_PI429285431	1.8401151	A	1.0965561	A	1.6743010999311	0	lncRNA	32067-1_{1..308}	n335187|AY429552|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254640|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254640|0.5862750|-0.3676391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335187|AY429552|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254640|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254640|0.5862750|-0.3676391	chr5	 61661135	 61661442	+	NA	NA	NA	NA	KIF2A	NA	chr5:61651135-61679597	inner
LNCA_21_P0014521	0.9041278	A	2.4702911	A	0.337705293792637	0	lncRNA	ENST00000419182	XR_110196	XR_110196	NA	NA	LOC729658	NA	ENST00000419182	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC729658 (LOC729658), miscRNA [XR_110196]"	chr6:163586543-163586484	hs|6q26	Agilent_HUMAN_G3V2	ENST00000419182	ENST00000419182	chr6	163586484	163586543	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8112_PI429285431	1.3832015	A	1.6105857	A	0.854182235763928	0	lncRNA	9715-1_{1..709}	lnc-RASL11B-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASL11B-3:4	chr4	 53586035	 53586743	+	lnc-RASL11B-3	lnc-RASL11B-3:4	ENSG00000226950	KIAA0114	NA	NA	NA	inter
CUST_33464_PI429285431	0.90359056	A	0.9098966	A	0.995638525131129	0	lncRNA	35037-1_{1..606}	n340199|BC038206|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2660|NULL|-0.7654870|-0.2459269	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340199|BC038206|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2660|NULL|-0.7654870|-0.2459269	chr4	109478388	109478993	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013600	0.89483523	A	0.90560436	A	0.992563198778825	0	lncRNA	ENST00000455981	NA	NA	NA	NA	XLOC_l2_015033	NA	ENST00000455981	THC2633710	NA	"BROAD Institute lincRNA (XLOC_l2_015033), lincRNA [TCONS_l2_00029053]"	chr9:132047882-132047941	hs|9q34.11	Agilent_HUMAN_G3V2	ENST00000455981	ENST00000455981	chr9	132047882	132047941	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001693	9.277784	P	9.161632	P	1.08384015246284	0	lncRNA	TCONS_00002090	NA	NA	NA	NA	XLOC_000294	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000294), lincRNA [TCONS_00002090]"	chr1:93798667-93798726	hs|1p22.1	Agilent_HUMAN_G3V2	TCONS_00002090	TCONS_00002090	chr1	 93798667	 93798726	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013329	0.8842773	A	1.7187853	A	0.560774246360028	0	lncRNA	TCONS_l2_00026664	NA	NA	NA	NA	XLOC_l2_013875	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013875), lincRNA [TCONS_l2_00026664]"	chr7:66296331-66296272	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00026664	TCONS_l2_00026664	chr7	 66296272	 66296331	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014922	4.113518	P	3.7992594	P	1.24337252079513	0	lncRNA	XR_133153	XR_133153	XR_133153	NA	NA	C18orf61	chromosome 18 open reading frame 61	NA	THC2645961	NA	"PREDICTED: Homo sapiens chromosome 18 open reading frame 61 (C18orf61), miscRNA [XR_133153]"	chr18:12223419-12223478	hs|18p11.21	Agilent_HUMAN_G3V2	XR_133153	XR_133153	chr18	 12223419	 12223478	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012190	4.4099016	P	4.063046	P	1.27178570676558	0	lncRNA	TCONS_l2_00017172	NA	NA	NA	NA	XLOC_l2_009160	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009160), lincRNA [TCONS_l2_00017172]"	chr21:23847232-23847173	hs|21q21.1	Agilent_HUMAN_G3V2	TCONS_l2_00017172	TCONS_l2_00017172	chr21	 23847173	 23847232	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31841_PI429285431	3.4466324	P	3.583192	P	0.909685901975024	0	lncRNA	33575-1_{1..2532}	n338387|BC014926|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|783|NULL|-0.9863550|-0.2486811	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338387|BC014926|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|783|NULL|-0.9863550|-0.2486811	chr14	 74178485	 74181016	+	NA	NA	NA	NA	C14orf43	"hg19_refFlat_PNMA1:range=chr14:74179281-741803425'pad=0,hg19_refFlat_PNMA1:range=chr14:74179281-741803425'pad=0 3'pad=0 strand=- repeatMasking=none,-101.20chr14:74181825-74190998"	NA	inner
CUST_24924_PI429285431	10.49877	P	10.644254	P	0.90407602432929	0	lncRNA	26465-1_{1..3000}	lnc-C6orf221-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C6orf221-2:3	chr6	 74000256	 74003255	+	lnc-C6orf221-2	lnc-C6orf221-2:3	ENSG00000229852.2	RP11-398K22.12	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.20"	NA	inter
LNCA_21_P0002301	0.88136244	A	0.8741388	A	1.00501960190044	0	lncRNA	TCONS_00003909	NA	NA	NA	NA	XLOC_001715	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001715), lincRNA [TCONS_00003909]"	chr2:156345619-156345678	hs|2q24.1	Agilent_HUMAN_G3V2	TCONS_00003909	TCONS_00003909	chr2	156345619	156345678	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006383	4.5792623	P	5.0722485	P	0.710552818302194	0	lncRNA	TCONS_00016825	NA	NA	NA	NA	XLOC_007764	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007764), lincRNA [TCONS_00016825]"	chr9:90721436-90721377	hs|9q22.1	Agilent_HUMAN_G3V2	TCONS_00016825	TCONS_00016825	chr9	 90721377	 90721436	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003868	1.4041266	A	1.0711954	A	1.25956991148262	0	lncRNA	THC2648791	NA	NA	NA	NA	XLOC_003807	NA	NA	THC2648791	NA	"BROAD Institute lincRNA (XLOC_003807), lincRNA [TCONS_00008951]"	chr4:185396946-185397005	hs|4q35.1	Agilent_HUMAN_G3V2	THC2648791	THC2648791	chr4	185396946	185397005	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32251_PI429285431	5.848284	P	5.685225	P	1.11965867692501	0	lncRNA	33943-1_{1..3000}	n338826|BC036774|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1249|NULL|-0.9527720|-0.2017699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338826|BC036774|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1249|NULL|-0.9527720|-0.2017699	chr12	   248699	   251698	-	NA	NA	NA	NA	IQSEC3	"hg19_refFlat_IQSEC3:range=chr12:247439-2804875'pad=0,hg19_refFlat_IQSEC3:range=chr12:247439-2804875'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60;hg19_refFlat_IQSEC3:range=chr12:176049-2841995'pad=0,hg19_refFlat_IQSEC3:range=chr12:176049-2841995'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.60chr12:238699-268281"	NA	inner
CUST_48527_PI429285431	0.9260083	A	1.2271945	A	0.8115848278292	0	lncRNA	52377-1_{1..1009}	hg19_lincRNAsTranscripts_TCONS_l2_00013631 range=chr2:52215564-52332226 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013631 range=chr2:52215564-52332226 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 52215564	 52216572	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2460_PI429285431	3.7458403	P	4.114938	P	0.774266592372834	0	lncRNA	2452-1_{1..403}	"transcript_id ""ENST00000434292.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434292.1"" | genecode_v17"	chr6	   958563	   958965	-	ENSG00000229796.1	ENST00000434292.1	RP5-1077H22.1	RP5-1077H22.1-001	NA	NA	NA	inter
CUST_10389_PI429285431	2.545462	A	2.7638254	A	0.859539949724955	0	lncRNA	11917-1_{1..1256}	lnc-RPLP1-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPLP1-1:7	chr15	 69863079	 69864334	+	lnc-RPLP1-1	lnc-RPLP1-1:7	XLOC_011294	linc-LRRC49-4	NA	NA	NA	inter
CUST_51045_PI429285431	2.088931	A	2.6018157	A	0.700819731724096	0	lncRNA	54687-1_{1..2319}	hg19_lincRNAsTranscripts_TCONS_l2_00006716 range=chr13:21866690-21869577 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006716 range=chr13:21866690-21869577 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr13	 21866690	 21869008	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90"	NA	inter
CUST_11694_PI429285431	0.90262324	A	1.6183711	A	0.608889415715298	0	lncRNA	13272-1_{1..412}	lnc-FARS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-FARS2-1:1	chr6	  5870274	  5870685	+	lnc-FARS2-1	lnc-FARS2-1:1	XLOC_005144	linc-LY86-3	NA	NA	NA	inter
LNCA_21_P0010170	2.4736757	A	1.3451552	A	2.18634413195683	0	lncRNA	AB073349	NA	AB073349	NA	Hs.731146	XLOC_013985	NA	NA	THC2613863	NA	"BROAD Institute lincRNA (XLOC_013985), lincRNA [TCONS_00028861]"	chr21:47016848-47016907	hs|21q22.3	Agilent_HUMAN_G3V2	AB073349	AB073349	chr21	 47016848	 47016907	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19417_PI429285431	9.995813	P	10.04078	P	0.969311988585264	0	lncRNA	21078-1_{1..572}	lnc-SLC13A4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC13A4-1:1	chr7	135413863	135414434	-	lnc-SLC13A4-1	lnc-SLC13A4-1:1	ENSG00000239652.1	AC091736.10	SLC13A4	NA	chr7:135403863-135412933	inter
CUST_31362_PI429285431	0.9005939	A	1.3178914	A	0.748826034909985	0	lncRNA	33142-1_{1..2274}	n337829|AK123629|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|212|NULL|-0.8434710|-0.3320488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337829|AK123629|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|212|NULL|-0.8434710|-0.3320488	chrX	110228633	110230906	+	NA	NA	NA	NA	PAK3	NA	chrX:110218633-110240907	inner
CUST_38950_PI429285431	0.9130374	A	0.9198971	A	0.995256504365388	0	lncRNA	39937-1_{1..3000}	n385123|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tdf.1||-0.2128610|-0.2892867	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385123|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tdf.1||-0.2128610|-0.2892867	chr7	 32961114	 32964113	-	NA	NA	NA	NA	NA	"hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-34.07;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00"	NA	inter
CUST_44653_PI429285431	1.3276722	A	0.8947383	A	1.3499761318107	0	lncRNA	49215-1_{1..2355}	"gi|354459411|ref|NR_027115.2| Homo sapiens uncharacterized LOC285768 (LOC285768), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|354459411|ref|NR_027115.2| Homo sapiens uncharacterized LOC285768 (LOC285768), transcript variant 1, non-coding RNA"	Chr6	   961241	   963595	-	285768	NR_027115.2	NA	NA	NA	NA	NA	inter
CUST_31271_PI429285431	0.8990164	A	1.0092546	A	0.926435087734112	0	lncRNA	33059-1_{1..1918}	n337726|CR591436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|108|NULL|2.4781900|-0.3654206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337726|CR591436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|108|NULL|2.4781900|-0.3654206	chrX	 54954462	 54956379	-	NA	NA	NA	NA	PFKFB1	"hg19_refFlat_TRO:range=chrX:54948680-549574535'pad=0,hg19_refFlat_TRO:range=chrX:54948680-549574535'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40;hg19_refFlat_TRO:range=chrX:54951424-549574535'pad=0,hg19_refFlat_TRO:range=chrX:54951424-549574535'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.40;hg19_refFlat_TRO:range=chrX:54948680-549577715'pad=0,hg19_refFlat_TRO:range=chrX:54948680-549577715'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.10chrX:54959590-54966380"	NA	inner
CUST_14973_PI429285431	1.9878247	A	2.5003655	A	0.700986808359555	0	lncRNA	16635-1_{1..929}	lnc-GIMAP8-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GIMAP8-1:6	chr7	150141852	150142780	+	lnc-GIMAP8-1	lnc-GIMAP8-1:6	XLOC_006293	linc-GIMAP8-1	GIMAP8	NA	chr7:150147962-150152088	inter
LNCA_21_P0002440	1.9278326	A	0.8759551	A	2.07322615583455	0	lncRNA	TCONS_00004253	NA	NA	NA	NA	XLOC_002096	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002096), lincRNA [TCONS_00004253]"	chr2:52918509-52918450	hs|2p16.2	Agilent_HUMAN_G3V2	TCONS_00004253	TCONS_00004253	chr2	 52918450	 52918509	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19789_PI429285431	1.4468911	A	1.7431215	A	0.814377495694192	0	lncRNA	21447-1_{1..554}	lnc-ACOT1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACOT1-3:3	chr14	 73930198	 73930751	+	lnc-ACOT1-3	lnc-ACOT1-3:3	ENSG00000251393.3	RP1-240K6.3	NUMB	NA	chr14:73920198-73925286	inter
LNCA_21_P0005720	5.345429	P	5.5987105	P	0.838985917420914	0	lncRNA	TCONS_00014759	NA	NA	NA	NA	XLOC_006844	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006844), lincRNA [TCONS_00014759]"	chr8:74794634-74794693	hs|8q21.11	Agilent_HUMAN_G3V2	TCONS_00014759	TCONS_00014759	chr8	 74794634	 74794693	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007088	7.4416523	P	7.692014	P	0.840685619416231	0	lncRNA	TCONS_00018858	NA	NA	NA	NA	XLOC_008661	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008661), lincRNA [TCONS_00018858]"	chr10:127389060-127389119	hs|10q26.13	Agilent_HUMAN_G3V2	TCONS_00018858	TCONS_00018858	chr10	127389060	127389119	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38108_PI429285431	1.1560109	A	2.0374727	A	0.542817147094927	0	lncRNA	39182-1_{1..1626}	n381183|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ebj.1||0.1416620|-0.2474023	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n381183|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ebj.1||0.1416620|-0.2474023	chr1	112141628	112143253	-	NA	NA	NA	NA	NA	"hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-60.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.50"	NA	inter
CUST_34415_PI429285431	5.787362	P	4.5435915	P	2.36816647226565	0	lncRNA	35895-2_{3001..3212}	n341285|BC040199|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3754|NULL|-0.9445800|-0.2525466	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341285|BC040199|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3754|NULL|-0.9445800|-0.2525466	chr7	101901319	101901530	+	NA	NA	NA	NA	CUX1	NA	chr7:101888319-101911513	inner
LNCA_21_P0007423	1.8404481	A	2.8466344	A	0.497860582006313	0	lncRNA	TCONS_00019807	NA	NA	NA	NA	XLOC_009607	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009607), lincRNA [TCONS_00019807]"	chr11:130949722-130949663	hs|11q25	Agilent_HUMAN_G3V2	TCONS_00019807	TCONS_00019807	chr11	130949663	130949722	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003600	0.92372626	A	1.5688525	A	0.639436835613106	0	lncRNA	TCONS_00008046	NA	NA	NA	NA	XLOC_003508	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003508), lincRNA [TCONS_00008046]"	chr4:38289892-38289951	hs|4p14	Agilent_HUMAN_G3V2	TCONS_00008046	TCONS_00008046	chr4	 38289892	 38289951	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011827	1.2666134	A	0.9725977	A	1.22604820234068	0	lncRNA	TCONS_l2_00013845	NA	NA	NA	NA	XLOC_l2_007449	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007449), lincRNA [TCONS_l2_00013845]"	chr2:98292046-98292105	hs|2q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00013845	TCONS_l2_00013845	chr2	 98292046	 98292105	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009470	0.9208141	A	1.6102164	A	0.620110704946764	0	lncRNA	TCONS_00026303	NA	NA	NA	NA	XLOC_012648	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012648), lincRNA [TCONS_00026303]"	chr18:24402485-24402544	hs|18q11.2	Agilent_HUMAN_G3V2	TCONS_00026303	TCONS_00026303	chr18	 24402485	 24402544	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27757_PI429285431	1.4435399	A	1.6752546	A	0.85162210353378	0	lncRNA	29338-1_{1..429}	n324973|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079613|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079613|-0.3313970|-0.1970070	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324973|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079613|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079613|-0.3313970|-0.1970070	chr20	 46042638	 46043066	-	NA	NA	NA	NA	NA	"hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20"	NA	inter
CUST_46090_PI429285431	9.548445	P	9.458572	P	1.064276490398	0	lncRNA	50357-1_{1..1144}	"gi|392583878|ref|NR_026825.2| Homo sapiens ribosomal protein SA pseudogene 52 (RPSAP52), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|392583878|ref|NR_026825.2| Homo sapiens ribosomal protein SA pseudogene 52 (RPSAP52), non-coding RNA"	Chr12	 66151800	 66152943	-	204010	NR_026825.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0005448	5.520178	P	5.635746	P	0.923018839652644	0	lncRNA	ENST00000454149	NA	NA	NA	NA	XLOC_006302	NA	ENST00000454149	NA	NA	"BROAD Institute lincRNA (XLOC_006302), lincRNA [TCONS_00013648]"	chr7:154996021-154996756	hs|7q36.2	Agilent_HUMAN_G3V2	ENST00000454149	ENST00000454149	chr7	154996021	154996756	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49003_PI429285431	3.4786904	A	3.2035682	A	1.21009658318774	0	lncRNA	52834-1_{1..1819}	hg19_lincRNAsTranscripts_TCONS_l2_00019724 range=chr3:197339152-197354746 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019724 range=chr3:197339152-197354746 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	197339152	197340970	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20620_PI429285431	4.309294	P	4.344969	P	0.975575207366763	0	lncRNA	22259-1_{1..434}	lnc-BANP-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BANP-5:1	chr16	 88336028	 88336461	+	lnc-BANP-5	lnc-BANP-5:1	ENSG00000261273.1	LA16c-444G7.1	NA	NA	NA	inter
CUST_42339_PI429285431	5.626647	P	5.8062916	P	0.882920472111848	0	lncRNA	44998-1_{1..129}	ENST00000408823 ncrna:snoRNA chromosome:GRCh37:X:54953738:54953866:1 gene:ENSG00000221750 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408823 ncrna:snoRNA chromosome:GRCh37:X:54953738:54953866:1 gene:ENSG00000221750 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	 54953738	 54953866	+	ENSG00000221750	ENST00000408823	NA	NA	PFKFB1	NA	chrX:54959590-54963866	inner
LNCA_21_P0012237	3.2562532	P	3.6426444	P	0.765040908919835	0	lncRNA	TCONS_l2_00017540	NA	NA	NA	NA	XLOC_l2_009278	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009278), lincRNA [TCONS_l2_00017540]"	chr22:16415524-16415784	hs|22q11.1	Agilent_HUMAN_G3V2	TCONS_l2_00017540	TCONS_l2_00017540	chr22	 16415524	 16415784	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21844_PI429285431	1.1758838	A	0.89694136	A	1.21330515137798	0	lncRNA	23454-1_{1..384}	lnc-LEKR1-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LEKR1-4:4	chr3	157033600	157033983	+	lnc-LEKR1-4	lnc-LEKR1-4:4	ENSG00000243176.1	RP11-550I24.2	VEPH1	NA	chr3:157023600-157043684	inner
CUST_43081_PI429285431	1.5359609	A	0.92010033	A	1.53247184652535	0	lncRNA	47252-1_{1..126}	ENST00000408674 ncrna:snRNA chromosome:GRCh37:5:158745050:158745175:1 gene:ENSG00000221601 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408674 ncrna:snRNA chromosome:GRCh37:5:158745050:158745175:1 gene:ENSG00000221601 gene_biotype:snRNA transcript_biotype:snRNA	chr5	158745050	158745175	+	ENSG00000221601	ENST00000408674	NA	NA	IL12B	NA	chr5:158741791-158755175	inner
CUST_27312_PI429285431	0.9175199	A	0.92721856	A	0.99329994728221	0	lncRNA	28872-1_{1..758}	n324466|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041323|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041323|-1.4105400|-0.5358316	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324466|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041323|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041323|-1.4105400|-0.5358316	chr6	 81209891	 81210648	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18838_PI429285431	4.4235992	P	4.782777	P	0.779608756484418	0	lncRNA	20532-1_{1..582}	lnc-KY-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KY-2:1	chr3	135158598	135159179	-	lnc-KY-2	lnc-KY-2:1	ENSG00000240086	RP11-657O9.1	NA	NA	NA	inter
CUST_1337_PI429285431	0.90964854	A	1.166867	A	0.83669953591913	0	lncRNA	1326-1_{1..555}	"transcript_id ""ENST00000455974.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455974.1"" | genecode_v17"	chr3	 34244736	 34245290	+	ENSG00000236452.1	ENST00000455974.1	AC123023.1	AC123023.1-001	NA	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60"	NA	inter
CUST_20518_PI429285431	0.8866417	A	0.8834243	A	1.00223262033214	0	lncRNA	22160-1_{1..356}	lnc-FAM27E1.1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FAM27E1.1-7:1	chr9	 45415845	 45416200	-	lnc-FAM27E1.1-7	lnc-FAM27E1.1-7:1	ENSG00000235037.1	RP11-187C18.5	NA	NA	NA	inter
CUST_43631_PI429285431	9.074251	P	8.946527	P	1.09256870129372	0	lncRNA	48390-1_{1..2424}	"gi|374717336|ref|NR_046295.1| Homo sapiens misato homolog 1 (Drosophila) (MSTO1), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374717336|ref|NR_046295.1| Homo sapiens misato homolog 1 (Drosophila) (MSTO1), transcript variant 7, non-coding RNA"	Chr1	155579961	155582384	+	55154	NR_046295.1	NA	NA	NA	"hg19_refFlat_GON4L:range=chr1:155720375-1558235715'pad=0,hg19_refFlat_GON4L:range=chr1:155720375-1558235715'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20"	NA	inter
CUST_7925_PI429285431	1.4457451	A	0.8788159	A	1.4813670984122	0	lncRNA	9536-1_{1..579}	lnc-CRYBA4-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:5	chr22	 27061495	 27062073	+	lnc-CRYBA4-1	lnc-CRYBA4-1:5	ENSG00000225783	XLOC_014192	NA	NA	NA	inter
CUST_21385_PI429285431	5.3446074	P	5.730017	P	0.765561614729681	0	lncRNA	23007-1_{1..300}	lnc-PMEL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PMEL-2:1	chr12	 56435409	 56435708	-	lnc-PMEL-2	lnc-PMEL-2:1	ENSG00000257449.1	RP11-603J24.4	IKZF4	NA	chr12:56425409-56432219	inter
CUST_32075_PI429285431	3.5476239	P	4.239685	P	0.618968930729236	0	lncRNA	33783-1_{1..2915}	n338637|AK094194|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1050|NULL|1.0931800|-0.1963032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338637|AK094194|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1050|NULL|1.0931800|-0.1963032	chr2	  3454788	  3457702	+	NA	NA	NA	NA	TTC15	NA	chr2:3444788-3467703	inner
CUST_39780_PI429285431	1.0325822	A	1.4603459	A	0.743413246404367	0	lncRNA	40695-1_{1..3000}	n406099|NR_003366|lncRNA|Homosapiens||RefGeneNoncode|NR_003366||10.3075000|-0.2313750	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406099|NR_003366|lncRNA|Homosapiens||RefGeneNoncode|NR_003366||10.3075000|-0.2313750	chr2	 95426672	 95429671	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27115_PI429285431	2.7994525	A	2.8234289	A	0.983518162553715	0	lncRNA	28648-1_{1..655}	n324228|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326541|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326541|-0.7555040|-0.3365767	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324228|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326541|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326541|-0.7555040|-0.3365767	chr7	 19819832	 19820486	-	NA	NA	NA	NA	TMEM196	NA	chr7:19809832-19812404	inter
CUST_47052_PI429285431	3.3769293	P	1.7424325	A	3.1047923854305	0	lncRNA	51140-2_{3001..3782}	"gi|224451055|ref|NR_027049.1| Homo sapiens zinc finger family member 788 (ZNF788), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|224451055|ref|NR_027049.1| Homo sapiens zinc finger family member 788 (ZNF788), non-coding RNA"	Chr19	 12206078	 12206859	+	388507	NR_027049.1	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20"	NA	inter
LNCA_21_P0006760	1.7840592	A	0.8755806	A	1.87706498771645	0	lncRNA	XR_110401	XR_110401	XR_110401	NA	Hs.562293	LOC100506769	uncharacterized LOC100506769	ENST00000442700	THC2644347	NA	"PREDICTED: Homo sapiens hypothetical LOC100506769 (LOC100506769), miscRNA [XR_110401]"	chr10:50504554-50504495	hs|10q11.23	Agilent_HUMAN_G3V2	XR_110401	XR_110401	chr10	 50504495	 50504554	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00322260	5.4608784	P	5.8751264	P	0.750410541721405	0	lncRNA	XR_113168	XR_113168	XR_113168	NA	NA	LOC100506342	uncharacterized LOC100506342	NA	THC2607470	NA	"PREDICTED: Homo sapiens hypothetical LOC100506342 (LOC100506342), miscRNA [XR_113168]"	chr8:90734370-90734311	hs|8q21.3	Agilent_HUMAN_G3V2	XR_113168	XR_113168	chr8	 90734311	 90734370	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36452_PI429285431	1.1111927	A	2.1645021	A	0.481861552886182	0	lncRNA	37663-2_{3001..5285}	n344963|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_512|NULL|-1.6201900|-0.3244831	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344963|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_512|NULL|-1.6201900|-0.3244831	chr7	104625580	104627864	-	NA	NA	NA	NA	MLL5	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30chr7:104654637-104662888"	NA	inter
LNCA_21_P0009310	0.9231353	A	0.97466856	A	0.964910301406257	0	lncRNA	TCONS_00025605	NA	NA	NA	NA	XLOC_012436	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012436), lincRNA [TCONS_00025605]"	chr17:29914398-29914339	hs|17q11.2	Agilent_HUMAN_G3V2	TCONS_00025605	TCONS_00025605	chr17	 29914339	 29914398	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011519	3.0339336	P	3.1875076	P	0.899020550838369	0	lncRNA	TCONS_l2_00010600	NA	NA	NA	NA	XLOC_l2_005691	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005691), lincRNA [TCONS_l2_00010600]"	chr17:19401415-19401474	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00010600	TCONS_l2_00010600	chr17	 19401415	 19401474	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25281_PI429285431	0.9110141	A	0.9147986	A	0.997380222118431	0	lncRNA	26811-1_{1..576}	lnc-FOXB1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXB1-4:2	chr15	 60978926	 60979501	+	lnc-FOXB1-4	lnc-FOXB1-4:2	ENSG00000259482.1	RP11-219B17.2	RORA	NA	chr15:60968926-60989057	inner
CUST_27894_PI429285431	1.2710143	A	0.9150357	A	1.27985342919007	0	lncRNA	29488-1_{1..557}	n325131|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331960|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331960|-0.9147480|-0.3082136	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325131|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000331960|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000331960|-0.9147480|-0.3082136	chr2	139840204	139840760	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7053_PI429285431	2.3511727	A	2.8175247	A	0.723792468106906	0	lncRNA	6998-1_{1..767}	"transcript_id ""ENST00000420585.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420585.1"" | genecode_v17"	chrX	 45772702	 45773468	-	ENSG00000234613.1	ENST00000420585.1	RP5-1158E12.1	RP5-1158E12.1-001	NA	"hg19_refFlat_SRSF6:range=chr20:42086674-420897035'pad=0,hg19_refFlat_SRSF6:range=chr20:42086674-420897035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80"	NA	inter
CUST_26552_PI429285431	6.838935	P	6.5241795	P	1.24380084292738	0	lncRNA	28057-1_{1..638}	lnc-CCNB1IP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-CCNB1IP1-1:1	chr14	 20811207	 20811844	-	lnc-CCNB1IP1-1	lnc-CCNB1IP1-1:1	ENSG00000259001.1	RPPH1	PARP2	NA	chr14:20811773-20821844	inner
CUST_16482_PI429285431	0.89360535	A	0.8986862	A	0.996484417330108	0	lncRNA	18180-1_{1..1871}	lnc-DDX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DDX1-2:1	chr2	 15857866	 15859736	+	lnc-DDX1-2	lnc-DDX1-2:1	XLOC_001362	linc-MYCN-3	NA	NA	NA	inter
LNCA_21_P0001544	5.2145786	P	5.3293905	P	0.923502710073011	0	lncRNA	TCONS_00001578	NA	NA	NA	NA	XLOC_000914	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000914), lincRNA [TCONS_00001578]"	chr1:90978928-90978869	hs|1p22.2	Agilent_HUMAN_G3V2	TCONS_00001578	TCONS_00001578	chr1	 90978869	 90978928	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41_PI429201921	0.8936952	A	0.8927244	A	1.00067313373578	0	lncRNA	42-1_{1..1325}	TC22001191.hg.1	TCONS_l2_00017858-XLOC_l2_009444 // Broad TUCP // linc-OR11H1-2 chr22:-:16953631-16954957 // chr22 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr22:-:16953631-16954957	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00017858-XLOC_l2_009444	linc-OR11H1-2	chr22	 16953631	 16954957	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001904	1.6985373	A	1.6768683	A	1.0151331704036	0	lncRNA	ENST00000426124	NA	NA	NA	NA	XLOC_001626	NA	ENST00000426124	NA	NA	"BROAD Institute lincRNA (XLOC_001626), lincRNA [TCONS_00002979]"	chr2:112369883-112369942	hs|2q13	Agilent_HUMAN_G3V2	ENST00000426124	ENST00000426124	chr2	112369883	112369942	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3332287	3.008674	P	2.0765822	A	1.90804050758853	0	lncRNA	XR_109820	XR_109820	XR_109820	   554045	Hs.722044	DUX4L9	double homeobox 4 like 9	NA	NA	GO:0010468|GO:0005515|GO:0000976|GO:0008283|GO:0005634	"PREDICTED: Homo sapiens double homeobox 4 like 9 (DUX4L9), miscRNA [XR_109820]"	chr4:190942715-190942656	hs|4q35.2	Agilent_HUMAN_G3V2	XR_109820	XR_109820	chr4	190942656	190942715	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001834	2.588302	A	2.9281347	A	0.79013293314972	0	lncRNA	ENST00000420404	NA	NA	NA	NA	XLOC_001367	NA	ENST00000420404	THC2621473	NA	"BROAD Institute lincRNA (XLOC_001367), lincRNA [TCONS_00002834]"	chr2:16409993-16410052	hs|2p24.3	Agilent_HUMAN_G3V2	ENST00000420404	ENST00000420404	chr2	 16409993	 16410052	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34138_PI429285431	0.90304023	A	0.9114169	A	0.994210558587905	0	lncRNA	35658-1_{1..593}	n340978|AF147423|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3444|NULL|-1.0457800|-0.4944430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340978|AF147423|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3444|NULL|-1.0457800|-0.4944430	chr11	 16221973	 16222565	-	NA	NA	NA	NA	SOX6	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70chr11:16211973-16232435"	NA	inner
LNCA_21_P0008487	3.4635458	P	4.4863386	P	0.492162690394039	0	lncRNA	TCONS_00022868	NA	NA	NA	NA	XLOC_011119	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011119), lincRNA [TCONS_00022868]"	chr14:99751087-99751028	hs|14q32.2	Agilent_HUMAN_G3V2	TCONS_00022868	TCONS_00022868	chr14	 99751028	 99751087	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50547_PI429285431	7.3924704	P	7.286421	P	1.07627697745946	0	lncRNA	54239-1_{1..807}	hg19_lincRNAsTranscripts_TCONS_l2_00030643 range=chrX:155255811-155257756 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030643 range=chrX:155255811-155257756 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	155255811	155256617	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37079_PI429285431	1.036848	A	0.9008246	A	1.09887204074567	0	lncRNA	38207-1_{1..3000}	n345524|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1073|NULL|-1.6732000|-0.3016486	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345524|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1073|NULL|-1.6732000|-0.3016486	chr2	 46865335	 46868334	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007368	0.882121	A	0.87393045	A	1.00569340280205	0	lncRNA	TCONS_00019697	NA	NA	NA	NA	XLOC_009494	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009494), lincRNA [TCONS_00019697]"	chr11:71589480-71589421	hs|11q13.4	Agilent_HUMAN_G3V2	TCONS_00019697	TCONS_00019697	chr11	 71589421	 71589480	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43355_PI429285431	3.0137842	A	2.004872	A	2.01239317239621	0	lncRNA	48173-1_{1..3000}	"gi|237820625|ref|NR_027693.1| Homo sapiens chromosome 1 open reading frame 170 (C1orf170), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237820625|ref|NR_027693.1| Homo sapiens chromosome 1 open reading frame 170 (C1orf170), non-coding RNA"	Chr1	   910579	   913578	-	84808	NR_027693.1	NA	NA	NA	NA	NA	inter
LNCA_19_P00321014	4.47475	P	2.4205332	A	4.15318115170691	0	lncRNA	XR_110931	XR_110931	XR_110931	NA	Hs.691047	LOC100506661	NA	NA	THC2496281	NA	"PREDICTED: Homo sapiens hypothetical LOC100506661 (LOC100506661), miscRNA [XR_110931]"	chrX:15716353-15716412	hs|Xp22.2	Agilent_HUMAN_G3V2	XR_110931	XR_110931	chrX	 15716353	 15716412	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002843	0.88330543	A	0.87453246	A	1.00609948598844	0	lncRNA	ENST00000435884	NA	NA	NA	NA	XLOC_003070	NA	ENST00000435884	NA	NA	"BROAD Institute lincRNA (XLOC_003070), lincRNA [TCONS_00005751]"	chr3:26660886-26660827	hs|3p24.1	Agilent_HUMAN_G3V2	ENST00000435884	ENST00000435884	chr3	 26660827	 26660886	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20341_PI429285431	8.805572	P	9.408227	P	0.658540922896964	0	lncRNA	21982-2_{3001..5862}	lnc-RPS25-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS25-1:9	chr11	118901338	118904199	-	lnc-RPS25-1	lnc-RPS25-1:9	ENSG00000137700.10	SLC37A4	SLC37A4	NA	chr11:118895061-118901616	inner
LNCA_21_P0010579	3.4925048	P	3.9338293	P	0.736458175494334	0	lncRNA	TCONS_l2_00000862	NA	NA	NA	NA	XLOC_l2_000643	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000643), lincRNA [TCONS_l2_00000862]"	chr1:224770850-224770909	hs|1q42.12	Agilent_HUMAN_G3V2	TCONS_l2_00000862	TCONS_l2_00000862	chr1	224770850	224770909	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7204_PI429285431	0.90032995	A	1.5782068	A	0.62508450690098	0	lncRNA	7599-1_{1..301}	"transcript_id ""ENST00000364770.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000364770.1"" | genecode_v17"	chr4	 97269889	 97270189	-	ENSG00000201640.1	ENST00000364770.1	RN7SKP28	RN7SKP28-201	NA	NA	NA	inter
CUST_9454_PI429285431	0.8928502	A	0.88136244	A	1.00799449513125	0	lncRNA	10959-1_{1..321}	lnc-SERPINA12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SERPINA12-1:1	chr14	 95026876	 95027196	-	lnc-SERPINA12-1	lnc-SERPINA12-1:1	XLOC_011107	linc-SERPINA12	SERPINA4	NA	chr14:95027783-95036243	inter
CUST_18530_PI429285431	0.9182101	A	0.9087676	A	1.006566507847	0	lncRNA	20244-1_{1..547}	lnc-ASAP2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASAP2-4:2	chr2	  9245125	  9245671	+	lnc-ASAP2-4	lnc-ASAP2-4:2	ENSG00000242136	RP11-734K21.2	NA	NA	NA	inter
CUST_47118_PI429285431	2.0406508	A	1.0604517	A	1.97273763905037	0	lncRNA	51200-1_{1..2524}	"gi|333470712|ref|NR_038249.1| Homo sapiens uncharacterized LOC100507433 (LOC100507433), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333470712|ref|NR_038249.1| Homo sapiens uncharacterized LOC100507433 (LOC100507433), transcript variant 3, non-coding RNA"	Chr19	 38042273	 38044796	+	100507433	NR_038249.1	NA	NA	NA	"hg19_refFlat_ZNF571:range=chr19:38055500-380775775'pad=0,hg19_refFlat_ZNF571:range=chr19:38055500-380775775'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80"	NA	inter
CUST_32805_PI429285431	3.9012027	P	3.6043224	P	1.22848504915961	0	lncRNA	34440-1_{1..1919}	n339451|AK027242|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1889|NULL|-0.9613380|-0.2566807	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339451|AK027242|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1889|NULL|-0.9613380|-0.2566807	chr21	 27538214	 27540132	-	NA	NA	NA	NA	APP	NA	chr21:27528214-27543446	inner
LNCA_33_P3677061	3.6193805	P	4.1690483	P	0.683177421086698	0	lncRNA	XR_132607	XR_132607	XR_132607	   283887	Hs.652665	LOC283887	uncharacterized LOC283887	NA	THC2615529	NA	"PREDICTED: Homo sapiens hypothetical LOC283887 (LOC283887), miscRNA [XR_132607]"	chr16:25080025-25080084	hs|16p12.1	Agilent_HUMAN_G3V2	XR_132607	XR_132607	chr16	 25080025	 25080084	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012244	5.6711574	P	6.2969303	P	0.648072490192328	0	lncRNA	TCONS_l2_00017563	NA	NA	NA	NA	XLOC_l2_009285	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009285), lincRNA [TCONS_l2_00017563]"	chr22:17528288-17531081	hs|22q11.1	Agilent_HUMAN_G3V2	TCONS_l2_00017563	TCONS_l2_00017563	chr22	 17528288	 17531081	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39233_PI429285431	0.9166013	A	0.9251785	A	0.994072376101325	0	lncRNA	40205-2_{3001..3223}	n386058|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010aeh.1||0.3257570|-0.1651082	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386058|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010aeh.1||0.3257570|-0.1651082	chr13	 64405979	 64406201	-	NA	NA	NA	NA	LOC100507505	NA	chr13:64392979-64407126	inter
LNCA_21_P0001710	1.9014163	A	2.9557817	A	0.48150897690678	0	lncRNA	TCONS_00002215	NA	NA	NA	NA	XLOC_000523	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000523), lincRNA [TCONS_00002215]"	chr1:201552902-201552961	hs|1q32.1	Agilent_HUMAN_G3V2	TCONS_00002215	TCONS_00002215	chr1	201552902	201552961	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014388	9.440314	P	10.13779	P	0.616650095002285	0	lncRNA	ENST00000545324	XR_109560	XR_109560	NA	Hs.211463	DNM2	dynamin 2	ENST00000545324	THC2476539	GO:0005515|GO:0008017|GO:0030054|GO:0005886|GO:0003924|GO:0045202|GO:0005634|GO:0032403|GO:0005829|GO:0031623|GO:0033572|GO:0005737|GO:0000166|GO:0045211|GO:0000086|GO:0005856|GO:0006355|GO:0043065|GO:0019901|GO:0005874|GO:0006892|GO:0014069|GO:0048489|GO:0005525|GO:0006897|GO:0006184|GO:0007165|GO:0045334|GO:0000139|GO:0016787|GO:0045893|GO:0019899|GO:0016044	"PREDICTED: Homo sapiens hypothetical LOC100507081 (LOC100507081), miscRNA [XR_109560]"	chr19:10922413-10922472	hs|19p13.2	Agilent_HUMAN_G3V2	ENST00000545324	ENST00000545324	chr19	 10922413	 10922472	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11198_PI429285431	0.91730934	A	1.2191808	A	0.811199427905218	0	lncRNA	12756-1_{1..1182}	lnc-MX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MX1-1:1	chr21	 42953479	 42954660	+	lnc-MX1-1	lnc-MX1-1:1	XLOC_013947	linc-UMODL1-5	NA	NA	NA	inter
CUST_43199_PI429285431	0.9219831	A	1.1943067	A	0.827984921476446	0	lncRNA	48013-1_{1..1101}	ENST00000587933 havana:sense_intronic chromosome:GRCh37:18:56038798:56039898:1 gene:ENSG00000267504 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000587933 havana:sense_intronic chromosome:GRCh37:18:56038798:56039898:1 gene:ENSG00000267504 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr18	 56038798	 56039898	+	ENSG00000267504	ENST00000587933	NA	NA	NEDD4L	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10chr18:56028798-56049898"	NA	inner
LNCA_21_P0004200	1.4632988	A	0.9527138	A	1.42462775236738	0	lncRNA	TCONS_00009838	NA	NA	NA	NA	XLOC_004254	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004254), lincRNA [TCONS_00009838]"	chr5:2561204-2561263	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00009838	TCONS_00009838	chr5	  2561204	  2561263	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30243_PI429285431	5.6531315	P	5.6761246	P	0.984188729117279	0	lncRNA	32018-1_{1..626}	n335113|AL590888|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250640|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250640|3.5195200|-0.0908701	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335113|AL590888|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250640|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250640|3.5195200|-0.0908701	chr22	 43564113	 43564738	-	NA	NA	NA	NA	TTLL12	NA	chr22:43562628-43583137	inner
CUST_16507_PI429285431	6.4512014	P	6.553244	P	0.931712917214447	0	lncRNA	18207-1_{1..2120}	lnc-LRCH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LRCH1-1:1	chr13	 47405431	 47407550	+	lnc-LRCH1-1	lnc-LRCH1-1:1	XLOC_010384	linc-NUDT15-4	HTR2A	NA	chr13:47407513-47417401	inner
CUST_19726_PI429285431	0.9049541	A	1.4605833	A	0.680360269231751	0	lncRNA	21384-1_{1..714}	lnc-ATG2B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ATG2B-1:1	chr14	 96939596	 96940309	-	lnc-ATG2B-1	lnc-ATG2B-1:1	ENSG00000258530.1	RP11-872J21.2	AK7	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr14:96929596-96950208"	NA	inner
CUST_29014_PI429285431	6.9641953	P	6.936108	P	1.01965938250388	0	lncRNA	30739-1_{1..931}	n326499|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030002|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030002|-1.2856300|-0.4007493	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326499|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030002|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030002|-1.2856300|-0.4007493	chr1	103001465	103002395	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45902_PI429285431	2.558815	A	1.164788	A	2.62811243889413	0	lncRNA	50213-1_{1..2924}	"gi|335334919|ref|NR_038364.1| Homo sapiens ferredoxin-fold anticodon binding domain containing 1 (FDXACB1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|335334919|ref|NR_038364.1| Homo sapiens ferredoxin-fold anticodon binding domain containing 1 (FDXACB1), transcript variant 2, non-coding RNA"	NW_003871080.1	   126047	   128970	-	91893	NR_038364.1	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10"	NA	Unknown
CUST_8643_PI429285431	2.3204226	A	2.5294025	A	0.865148743976817	0	lncRNA	10196-1_{1..467}	lnc-RP11-62N21.1.1-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-62N21.1.1-9:1	chr4	135248413	135248879	-	lnc-RP11-62N21.1.1-9	lnc-RP11-62N21.1.1-9:1	ENSG00000251199	RP11-400D2.2	NA	NA	NA	inter
CUST_16002_PI429285431	3.6268113	P	3.0358238	A	1.50627741567798	0	lncRNA	17699-1_{1..1321}	lnc-CCDC111-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC111-2:1	chr4	185398770	185400090	+	lnc-CCDC111-2	lnc-CCDC111-2:1	XLOC_003807	linc-CCDC111-2	IRF2	NA	chr4:185388770-185395726	inter
CUST_618_PI429285431	4.1461663	P	5.1016374	P	0.515673173392642	0	lncRNA	610-1_{1..354}	"transcript_id ""ENST00000457477.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457477.1"" | genecode_v17"	chr1	240693752	240694105	+	ENSG00000224359.1	ENST00000457477.1	RP11-467I20.2	RP11-467I20.2-001	GREM2	NA	chr1:240683752-240704162	inner
CUST_12124_PI429285431	1.6888266	A	1.8782725	A	0.876942466439347	0	lncRNA	13722-1_{1..3000}	lnc-BTG2-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTG2-2:4	chr1	203367603	203370602	+	lnc-BTG2-2	lnc-BTG2-2:4	XLOC_000529	linc-PRELP	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-17.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90"	NA	inter
CUST_34569_PI429285431	0.90906423	A	0.91132545	A	0.998433869396863	0	lncRNA	36029-1_{1..2328}	n341452|AK123312|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3922|NULL|-0.9349730|-0.2966586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341452|AK123312|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3922|NULL|-0.9349730|-0.2966586	chr8	 16988689	 16991016	+	NA	NA	NA	NA	ZDHHC2	NA	chr8:17007712-17017298	inter
LNCA_21_P0002044	6.765802	P	6.7081285	P	1.04078602808428	0	lncRNA	ENST00000430847	XR_109978	XR_109978	NA	NA	XLOC_002075	NA	ENST00000430847	THC2646147	NA	"PREDICTED: Homo sapiens hypothetical LOC100506088 (LOC100506088), miscRNA [XR_109978]"	chr2:45157147-45157088	hs|2p21	Agilent_HUMAN_G3V2	ENST00000430847	ENST00000430847	chr2	 45157088	 45157147	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39163_PI429285431	9.2316	P	8.882355	P	1.27389379095144	0	lncRNA	40140-1_{1..631}	n385839|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004fdu.2||-1.1474300|-0.2525309	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385839|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004fdu.2||-1.1474300|-0.2525309	chrX	148853852	148854482	+	NA	NA	NA	NA	MAGEA9	NA	chrX:148863600-148864483	inter
LNCA_21_P0009233	6.672383	P	6.779857	P	0.928211836566858	0	lncRNA	TCONS_00025343	NA	NA	NA	NA	XLOC_012160	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012160), lincRNA [TCONS_00025343]"	chr17:27343629-27343688	hs|17q11.2	Agilent_HUMAN_G3V2	TCONS_00025343	TCONS_00025343	chr17	 27343629	 27343688	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33400_PI429285431	0.8901959	A	1.0238345	A	0.911529593293567	0	lncRNA	34978-1_{1..578}	n340121|AF086310|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2580|NULL|-1.0341300|-0.2972704	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340121|AF086310|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2580|NULL|-1.0341300|-0.2972704	chr4	 76007134	 76007711	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22080_PI429285431	7.107912	P	7.3463345	P	0.847671683656926	0	lncRNA	23686-1_{1..584}	lnc-C15orf57-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C15orf57-2:1	chr15	 40746476	 40747059	-	lnc-C15orf57-2	lnc-C15orf57-2:1	ENSG00000259364.1	RP11-64K12.9	BAHD1	NA	chr15:40736476-40756838	inner
CUST_17888_PI429285431	0.8991708	A	0.89701104	A	1.0014981526658	0	lncRNA	19622-1_{1..407}	lnc-NDST3-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDST3-5:4	chr4	118293914	118294320	+	lnc-NDST3-5	lnc-NDST3-5:4	XLOC_003658	linc-NDST3-3	NA	NA	NA	inter
CUST_8502_PI429285431	7.5638933	P	7.932788	P	0.774375546221259	0	lncRNA	10065-1_{1..654}	lnc-ABLIM3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABLIM3-1:2	chr5	148489026	148489679	+	lnc-ABLIM3-1	lnc-ABLIM3-1:2	ENSG00000250072	CTC-529P8.1	NA	NA	NA	inter
CUST_49137_PI429285431	6.054127	P	5.9183073	P	1.098716897471	0	lncRNA	52963-1_{1..633}	hg19_lincRNAsTranscripts_TCONS_l2_00021224 range=chr4:103339779-103340686 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021224 range=chr4:103339779-103340686 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	103339779	103340411	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47018_PI429285431	2.463593	A	2.8389864	A	0.77089517318365	0	lncRNA	51112-1_{1..2379}	"gi|310123793|ref|XR_110164.1| PREDICTED: Homo sapiens uncharacterized LOC100506089 (LOC100506089), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|310123793|ref|XR_110164.1| PREDICTED: Homo sapiens uncharacterized LOC100506089 (LOC100506089), misc_RNA"	NA	NA	NA	NA	NA	XR_110164.1	NA	NA	NA	"hg19_refFlat_PARD6G:range=chr18:77917654-780052315'pad=0,hg19_refFlat_PARD6G:range=chr18:77917654-780052315'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80"	NA	Unknown
CUST_45250_PI429285431	5.201952	P	5.643839	P	0.736171089891415	0	lncRNA	49703-1_{1..576}	"gi|397139289|ref|XR_108874.2| PREDICTED: Homo sapiens uncharacterized LOC100506753 (LOC100506753), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139289|ref|XR_108874.2| PREDICTED: Homo sapiens uncharacterized LOC100506753 (LOC100506753), misc_RNA"	Chr8	103876499	103877074	+	100506753	XR_108874.3	NA	NA	NA	NA	NA	inter
CUST_41093_PI429285431	1.5493058	A	2.2089617	A	0.6330292640216	0	lncRNA	41794-1_{1..80}	ENST00000584153 ncrna:miRNA chromosome:GRCh37:1:243509478:243509557:1 gene:ENSG00000265201 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584153 ncrna:miRNA chromosome:GRCh37:1:243509478:243509557:1 gene:ENSG00000265201 gene_biotype:miRNA transcript_biotype:miRNA	chr1	243509478	243509557	+	ENSG00000265201	ENST00000584153	NA	NA	SDCCAG8	NA	chr1:243499478-243519557	inner
CUST_42544_PI429285431	3.4071715	P	3.9043016	P	0.708514802607727	0	lncRNA	45352-1_{1..84}	ENST00000363091 ncrna:snoRNA chromosome:GRCh37:17:74557191:74557274:1 gene:ENSG00000199961 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363091 ncrna:snoRNA chromosome:GRCh37:17:74557191:74557274:1 gene:ENSG00000199961 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 74557191	 74557274	+	ENSG00000199961	ENST00000363091	NA	NA	ST6GALNAC2	NA	chr17:74561461-74567274	inter
CUST_229_PI429285431	2.0140915	A	0.89685893	A	2.16930449275156	0	lncRNA	219-1_{1..292}	"transcript_id ""ENST00000455238.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455238.1"" | genecode_v17"	chr1	 48544459	 48544750	-	ENSG00000231413.1	ENST00000455238.1	RP11-193P11.3	RP11-193P11.3-001	NA	NA	NA	inter
CUST_22893_PI429285431	0.92467487	A	1.7708018	A	0.556276116314912	0	lncRNA	24470-1_{1..377}	lnc-CLEC3A-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CLEC3A-5:1	chr16	 79144580	 79144956	+	lnc-CLEC3A-5	lnc-CLEC3A-5:1	ENSG00000260511.1	RP11-556H2.2	WWOX	NA	chr16:79134580-79154779	inner
CUST_46157_PI429285431	1.553756	A	1.5605481	A	0.995303139942595	0	lncRNA	50406-1_{1..1238}	"gi|394025689|ref|NR_073007.1| Homo sapiens cyclin-dependent kinase 2 associated protein 1 (CDK2AP1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|394025689|ref|NR_073007.1| Homo sapiens cyclin-dependent kinase 2 associated protein 1 (CDK2AP1), transcript variant 4, non-coding RNA"	Chr12	123745517	123746754	-	8099	NR_073007.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0009688	4.2446127	P	4.82934	P	0.666775361337759	0	lncRNA	TCONS_00026911	NA	NA	NA	NA	XLOC_012983	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012983), lincRNA [TCONS_00026911]"	chr19:16139485-16139544	hs|19p13.12	Agilent_HUMAN_G3V2	TCONS_00026911	TCONS_00026911	chr19	 16139485	 16139544	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003891	0.92362297	A	0.96365535	A	0.97263311728681	0	lncRNA	TCONS_00009029	NA	NA	NA	NA	XLOC_003889	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003889), lincRNA [TCONS_00009029]"	chr4:13841119-13841060	hs|4p15.33	Agilent_HUMAN_G3V2	TCONS_00009029	TCONS_00009029	chr4	 13841060	 13841119	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30123_PI429285431	1.8173536	A	3.160228	A	0.394234407300136	0	lncRNA	31896-1_{1..263}	n334750|AJ008224|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244305|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244305|1.6232900|-0.0726025	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334750|AJ008224|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244305|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244305|1.6232900|-0.0726025	chr14	106331431	106331693	-	NA	NA	NA	NA	LOC100288568	NA	chr14:106833231-106859077	inter
CUST_27582_PI429285431	7.084296	P	7.129884	P	0.968894843454103	0	lncRNA	29160-1_{1..349}	n324784|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000195054|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000195054|-1.1826800|-0.2796973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324784|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000195054|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000195054|-1.1826800|-0.2796973	chr21	 41436938	 41437286	-	NA	NA	NA	NA	DSCAM	NA	chr21:41426938-41451220	inter
CUST_8398_PI429285431	8.824613	P	9.489355	P	0.630801501806311	0	lncRNA	9976-1_{1..2751}	lnc-CPPED1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPPED1-1:1	chr16	 12664270	 12667020	-	lnc-CPPED1-1	lnc-CPPED1-1:1	ENSG00000248390	ENST00000508160	SNX29	NA	chr16:12654270-12668146	inner
CUST_33179_PI429285431	3.0810678	A	2.931772	A	1.10902800756223	0	lncRNA	34772-1_{1..3000}	n339870|AK127251|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2318|NULL|-1.1543000|-0.2763575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339870|AK127251|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2318|NULL|-1.1543000|-0.2763575	chr18	 46091165	 46094164	+	NA	NA	NA	NA	CTIF	NA	chr18:46081165-46104713	inner
CUST_5119_PI429285431	0.92261904	A	0.926032	A	0.997637112422816	0	lncRNA	5059-1_{1..606}	"transcript_id ""ENST00000451579.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451579.1"" | genecode_v17"	chr15	 26640219	 26640824	+	ENSG00000235160.1	ENST00000451579.1	AC009878.2	AC009878.2-002	NA	NA	NA	inter
LNCA_21_P0008547	2.3182938	A	3.0118647	A	0.61832151014339	0	lncRNA	TCONS_00023166	NA	NA	NA	NA	XLOC_011117	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011117), lincRNA [TCONS_00023166]"	chr14:98435622-98408630	hs|14q32.2	Agilent_HUMAN_G3V2	TCONS_00023166	TCONS_00023166	chr14	 98408630	 98435622	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28017_PI429285431	0.9146379	A	0.91130084	A	1.0023157509492	0	lncRNA	29627-1_{1..625}	n325273|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328263|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328263|-1.2327500|-0.2752663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325273|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000328263|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000328263|-1.2327500|-0.2752663	chr2	 66985071	 66985695	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004448	5.025519	P	4.3802304	P	1.56405213151366	0	lncRNA	TCONS_00010505	NA	NA	NA	NA	XLOC_005024	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005024), lincRNA [TCONS_00010505]"	chr5:139531245-139531186	hs|5q31.3	Agilent_HUMAN_G3V2	TCONS_00010505	TCONS_00010505	chr5	139531186	139531245	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008461	5.5470624	P	5.560162	P	0.990961147462709	0	lncRNA	ENST00000557581	NA	NA	NA	NA	XLOC_011068	NA	ENST00000557581	NA	NA	"BROAD Institute lincRNA (XLOC_011068), lincRNA [TCONS_00022791]"	chr14:73929246-73929187	hs|14q24.3	Agilent_HUMAN_G3V2	ENST00000557581	ENST00000557581	chr14	 73929187	 73929246	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25655_PI429285431	1.687484	A	2.6661053	A	0.507464462610458	0	lncRNA	27184-2_{3001..3391}	lnc-MFSD6L-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MFSD6L-1:4	chr17	  8773846	  8774236	-	lnc-MFSD6L-1	lnc-MFSD6L-1:4	ENSG00000174083.12	PIK3R6	PIK3R6	NA	chr17:8760846-8770994	inner
LNCA_33_P3688511	2.8044415	A	2.786882	A	1.01224568983542	0	lncRNA	XR_109637	XR_109637	XR_109637	100131174	Hs.103146	LOC100131174	uncharacterized LOC100131174	NA	THC2489798	NA	"PREDICTED: Homo sapiens hypothetical LOC100131174 (LOC100131174), miscRNA [XR_109637]"	chr20:61174461-61174520	hs|20q13.33	Agilent_HUMAN_G3V2	XR_109637	XR_109637	chr20	 61174461	 61174520	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001763	1.6418033	A	0.90207076	A	1.6698662350856	0	lncRNA	XR_110856	XR_110856	XR_110856	NA	NA	LOC100506929	uncharacterized LOC100506929	NA	THC2667330	NA	"PREDICTED: Homo sapiens hypothetical LOC100506929 (LOC100506929), miscRNA [XR_110856]"	chr1:240902739-240902680	hs|1q43	Agilent_HUMAN_G3V2	XR_110856	XR_110856	chr1	240902680	240902739	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42089_PI429285431	0.9003272	A	0.909246	A	0.993837028425563	0	lncRNA	44026-1_{1..99}	ENST00000579074 ncrna:miRNA chromosome:GRCh37:11:70718375:70718473:-1 gene:ENSG00000263744 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579074 ncrna:miRNA chromosome:GRCh37:11:70718375:70718473:-1 gene:ENSG00000263744 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 70718375	 70718473	-	ENSG00000263744	ENST00000579074	NA	NA	SHANK2	NA	chr11:70708375-70728473	inner
CUST_31178_PI429285431	10.137398	P	10.31712	P	0.882873105059572	0	lncRNA	32973-1_{1..291}	n337607|Z49993|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000408399|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000408399|-1.0311000|-0.1752613	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337607|Z49993|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000408399|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000408399|-1.0311000|-0.1752613	chr5	 76114805	 76115095	+	NA	NA	NA	NA	F2RL1	NA	chr5:76114833-76125096	inner
CUST_27063_PI429285431	4.4864507	P	4.476314	P	1.00705096685752	0	lncRNA	28596-2_{3001..3549}	n324173|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280498|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280498|-0.9291040|-0.3010053	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324173|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000280498|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000280498|-0.9291040|-0.3010053	chr8	 49668513	 49669061	+	NA	NA	NA	NA	NA	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70"	NA	inter
LNCA_19_P00803472	10.142203	P	9.842548	P	1.23085003786793	0	lncRNA	TCONS_00018502	NA	NA	NA	NA	XLOC_008811	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008811), lincRNA [TCONS_00018502]"	chr10:48512308-48512249	hs|10q11.22	Agilent_HUMAN_G3V2	TCONS_00018502	TCONS_00018502	chr10	 48512249	 48512308	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014820	7.8885665	P	7.8811398	P	1.00516106883377	0	lncRNA	ENST00000413518	XR_132660	XR_132660	NA	NA	LOC100507739	NA	ENST00000413518	THC2495198	NA	"PREDICTED: Homo sapiens hypothetical LOC100507739 (LOC100507739), miscRNA [XR_132660]"	chr19:58826633-58826692	hs|19q13.43	Agilent_HUMAN_G3V2	ENST00000413518	ENST00000413518	chr19	 58826633	 58826692	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35072_PI429285431	0.8993175	A	0.9055441	A	0.995693350094009	0	lncRNA	36482-1_{1..2057}	n342026|AL137575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4507|NULL|-1.0152300|-0.2653544	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342026|AL137575|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4507|NULL|-1.0152300|-0.2653544	chr12	115515129	115517185	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32224_PI429285431	6.4723387	P	6.477192	P	0.996641600869126	0	lncRNA	33916-1_{1..204}	n338797|AF147321|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1220|NULL|-1.3949000|-0.2730201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338797|AF147321|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1220|NULL|-1.3949000|-0.2730201	chr19	 49340353	 49340556	+	NA	NA	NA	NA	HSD17B14	NA	chr19:49330353-49339934	inner
CUST_31174_PI429285431	0.90357816	A	1.8720971	A	0.511030413682491	0	lncRNA	32969-1_{1..239}	n337602|X54707|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000398779|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000398779|1.8821600|-0.1631683	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337602|X54707|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000398779|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000398779|1.8821600|-0.1631683	chrX	153458899	153459137	+	NA	NA	NA	NA	OPN1MW	NA	chrX:153448899-153462352	inner
LNCA_21_P0001627	0.8818883	A	0.87424356	A	1.00531299413726	0	lncRNA	TCONS_00001829	NA	NA	NA	NA	XLOC_001212	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001212), lincRNA [TCONS_00001829]"	chr1:221728996-221728937	hs|1q41	Agilent_HUMAN_G3V2	TCONS_00001829	TCONS_00001829	chr1	221728937	221728996	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008845	3.1718354	P	2.3545718	A	1.76206067128623	0	lncRNA	TCONS_00024099	NA	NA	NA	NA	XLOC_011448	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011448), lincRNA [TCONS_00024099]"	chr15:41590301-41590242	hs|15q15.1	Agilent_HUMAN_G3V2	TCONS_00024099	TCONS_00024099	chr15	 41590242	 41590301	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007507	6.5851254	P	6.897608	P	0.80525487790264	0	lncRNA	AK098083	NA	AK098083	NA	Hs.482589	XLOC_010068	NA	NA	THC2518655	NA	"BROAD Institute lincRNA (XLOC_010068), lincRNA [TCONS_00020244]"	chr12:49673342-49673283	hs|12q13.12	Agilent_HUMAN_G3V2	AK098083	AK098083	chr12	 49673283	 49673342	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1268_PI429285431	1.4912403	A	0.90932274	A	1.4968374504862	0	lncRNA	1260-1_{1..663}	"transcript_id ""ENST00000449362.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449362.1"" | genecode_v17"	chr2	236086540	236087202	+	ENSG00000235293.1	ENST00000449362.1	AC114814.3	AC114814.3-001	NA	NA	NA	inter
CUST_28045_PI429285431	3.2507293	P	3.6640935	P	0.750870386666251	0	lncRNA	29661-1_{1..639}	n325308|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325653|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325653|-1.2981700|-0.4577822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325308|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325653|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325653|-1.2981700|-0.4577822	chr2	 52575329	 52575967	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33545_PI429285431	0.89674234	A	0.8961364	A	1.00042009381729	0	lncRNA	35113-1_{1..2401}	n340294|AF052119|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2755|NULL|-1.2313800|-0.2818083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340294|AF052119|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2755|NULL|-1.2313800|-0.2818083	chr4	186069154	186071554	+	NA	NA	NA	NA	KIAA1430	NA	chr4:186080819-186081536	inner
LNCA_33_P3324186	4.1652336	P	4.081767	P	1.05956096510286	0	lncRNA	XR_108597	XR_108597	XR_108597	   642366	Hs.544139	LOC642366	uncharacterized LOC642366	NA	THC2618380	NA	"PREDICTED: Homo sapiens hypothetical LOC642366 (LOC642366), miscRNA [XR_108597]"	chr5:50672961-50672902	hs|5q11.1	Agilent_HUMAN_G3V2	XR_108597	XR_108597	chr5	 50672902	 50672961	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41961_PI429285431	4.7721853	P	4.5686913	P	1.15148370878797	0	lncRNA	43744-1_{1..96}	ENST00000516344 ncrna:miRNA chromosome:GRCh37:9:97572244:97572339:1 gene:ENSG00000252153 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516344 ncrna:miRNA chromosome:GRCh37:9:97572244:97572339:1 gene:ENSG00000252153 gene_biotype:miRNA transcript_biotype:miRNA	chr9	 97572244	 97572339	+	ENSG00000252153	ENST00000516344	NA	NA	C9orf3	NA	chr9:97562244-97582339	inner
LNCA_21_P0002692	6.4183283	P	6.696674	P	0.824535948824134	0	lncRNA	TCONS_00005339	NA	NA	NA	NA	XLOC_002498	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002498), lincRNA [TCONS_00005339]"	chr2:221677598-221677539	hs|2q36.1	Agilent_HUMAN_G3V2	TCONS_00005339	TCONS_00005339	chr2	221677539	221677598	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008902	0.8838538	A	0.8769844	A	1.00477285922175	0	lncRNA	TCONS_00024321	NA	NA	NA	NA	XLOC_011635	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011635), lincRNA [TCONS_00024321]"	chr16:8149325-8149384	hs|16p13.2	Agilent_HUMAN_G3V2	TCONS_00024321	TCONS_00024321	chr16	  8149325	  8149384	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44730_PI429285431	5.497156	P	5.656559	P	0.89539551687995	0	lncRNA	49284-1_{1..1272}	"gi|312032495|ref|NR_037176.1| Homo sapiens uncharacterized LOC100507463 (LOC100507463), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|312032495|ref|NR_037176.1| Homo sapiens uncharacterized LOC100507463 (LOC100507463), transcript variant 4, non-coding RNA"	NT_167248.1	  4043970	  4045241	+	100507463	NR_037176.1	NA	NA	NA	"hg19_refFlat_TAP1:range=chr6_mann_hap4:4270552-42787895'pad=0,hg19_refFlat_TAP1:range=chr6_mann_hap4:4270552-42787895'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6:32813356-328215935'pad=0,hg19_refFlat_TAP1:range=chr6:32813356-328215935'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_dbb_hap3:4094734-41029715'pad=0,hg19_refFlat_TAP1:range=chr6_dbb_hap3:4094734-41029715'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_mcf_hap5:4150233-41584705'pad=0,hg19_refFlat_TAP1:range=chr6_mcf_hap5:4150233-41584705'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_TAP1:range=chr6_ssto_hap7:4244129-42523665'pad=0,hg19_refFlat_TAP1:range=chr6_ssto_hap7:4244129-42523665'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_qbl_hap6:4045463-40537005'pad=0,hg19_refFlat_TAP1:range=chr6_qbl_hap6:4045463-40537005'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TAP1:range=chr6_apd_hap1:4100360-41085975'pad=0,hg19_refFlat_TAP1:range=chr6_apd_hap1:4100360-41085975'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50;hg19_refFlat_TAP1:range=chr6_cox_hap2:4257884-42661215'pad=0,hg19_refFlat_TAP1:range=chr6_cox_hap2:4257884-42661215'pad=0 3'pad=0 strand=- repeatMasking=none,-97.50"	NA	Unknown
CUST_12197_PI429285431	0.9088968	A	0.91263324	A	0.997413448053595	0	lncRNA	13797-1_{1..3000}	lnc-MANEA-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MANEA-3:1	chr6	 94485886	 94488885	+	lnc-MANEA-3	lnc-MANEA-3:1	XLOC_005392	linc-MANEA-3	NA	NA	NA	inter
LNCA_21_P0010968	1.5075419	A	1.6754326	A	0.890143168822866	0	lncRNA	TCONS_l2_00004467	NA	NA	NA	NA	XLOC_l2_002276	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002276), lincRNA [TCONS_l2_00004467]"	chr11:32475629-32475688	hs|11p13	Agilent_HUMAN_G3V2	TCONS_l2_00004467	TCONS_l2_00004467	chr11	 32475629	 32475688	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014760	0.9226746	A	0.95033956	A	0.981006798738572	0	lncRNA	ENST00000444154	XR_132524	XR_132524	NA	Hs.638373	LOC100506557	NA	ENST00000444154	THC2489007	NA	"PREDICTED: Homo sapiens hypothetical LOC100506557 (LOC100506557), miscRNA [XR_132524]"	chr7:157319946-157320005	hs|7q36.3	Agilent_HUMAN_G3V2	ENST00000444154	ENST00000444154	chr7	157319946	157320005	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22359_PI429285431	0.9043346	A	0.9927256	A	0.940571158856657	0	lncRNA	23953-1_{1..737}	lnc-CACYBP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CACYBP-1:1	chr1	174866914	174867650	+	lnc-CACYBP-1	lnc-CACYBP-1:1	ENSG00000223525.1	RABGAP1L-IT1	RABGAP1L	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-28.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00chr1:174856914-174877133"	NA	inner
LNCA_21_P0006952	1.5291194	A	2.709085	A	0.441362021971996	0	lncRNA	TCONS_00018411	NA	NA	NA	NA	XLOC_008695	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008695), lincRNA [TCONS_00018411]"	chr10:3539895-3507690	hs|10p15.2	Agilent_HUMAN_G3V2	TCONS_00018411	TCONS_00018411	chr10	  3507690	  3539895	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013659	6.351394	P	6.8274937	P	0.718918582562814	0	lncRNA	TCONS_l2_00029368	NA	NA	NA	NA	XLOC_l2_015216	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015216), lincRNA [TCONS_l2_00029368]"	chr9:69112828-69112769	hs|9q21.11	Agilent_HUMAN_G3V2	TCONS_l2_00029368	TCONS_l2_00029368	chr9	 69112769	 69112828	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31558_PI429285431	2.970694	A	2.1626203	A	1.75087210031278	0	lncRNA	33316-1_{1..2306}	n338050|AF118089|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|437|NULL|-1.1131600|-0.3187773	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338050|AF118089|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|437|NULL|-1.1131600|-0.3187773	chr1	 89150233	 89152538	-	NA	NA	NA	NA	PKN2	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_PKN2:range=chr1:89150264-892991315'pad=0,hg19_refFlat_PKN2:range=chr1:89150264-892991315'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10chr1:89149922-89281951"	NA	inner
CUST_43442_PI429285431	6.293583	P	6.3650045	P	0.951699817794651	0	lncRNA	48250-1_{1..2203}	"gi|395132432|ref|NR_073017.1| Homo sapiens ST3 beta-galactoside alpha-2,3-sialyltransferase 3 (ST3GAL3), transcript variant 20, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|395132432|ref|NR_073017.1| Homo sapiens ST3 beta-galactoside alpha-2,3-sialyltransferase 3 (ST3GAL3), transcript variant 20, non-coding RNA"	Chr1	 44173204	 44175406	+	6487	NR_073017.1	NA	NA	NA	NA	NA	inter
CUST_5555_PI429285431	2.2281096	A	2.1666954	A	1.04348813760244	0	lncRNA	5485-1_{1..451}	"transcript_id ""ENST00000557953.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557953.1"" | genecode_v17"	chr16	 54273605	 54274055	+	ENSG00000259759.1	ENST00000557953.1	RP11-324D17.2	RP11-324D17.2-001	NA	NA	NA	inter
CUST_4233_PI429285431	0.9142619	A	0.91083026	A	1.00238146277916	0	lncRNA	4192-1_{1..552}	"transcript_id ""ENST00000551279.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551279.1"" | genecode_v17"	chr12	 43373057	 43373608	-	ENSG00000257373.1	ENST00000551279.1	RP11-547C5.2	RP11-547C5.2-001	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-21.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-39.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10"	NA	inter
CUST_38097_PI429285431	1.1998285	A	0.9227917	A	1.211703567948	0	lncRNA	39173-1_{1..2362}	n381118|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001cij.1||0.3932250|-0.1209684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381118|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001cij.1||0.3932250|-0.1209684	chr1	 43323292	 43325653	+	NA	NA	NA	NA	ZNF691	"hg19_refFlat_TMC6:range=chr17:76109229-761229135'pad=0,hg19_refFlat_TMC6:range=chr17:76109229-761229135'pad=0 3'pad=0 strand=- repeatMasking=none,-102.40chr1:43313292-43318148"	NA	inter
CUST_12592_PI429285431	0.92420596	A	0.9686619	A	0.969655418293037	0	lncRNA	14205-1_{1..262}	lnc-AP002414.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP002414.1.1-1:1	chr18	 12031915	 12032176	-	lnc-AP002414.1.1-1	lnc-AP002414.1.1-1:1	XLOC_012773	linc-MPPE1-4	IMPA2	NA	chr18:12021915-12030885	inter
CUST_1168_PI429285431	0.9114207	A	1.1546588	A	0.844846940766279	0	lncRNA	1157-1_{1..822}	"transcript_id ""ENST00000431455.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431455.1"" | genecode_v17"	chr2	177389607	177390428	-	ENSG00000236231.1	ENST00000431455.1	AC017048.2	AC017048.2-001	NA	NA	NA	inter
LNCA_21_P0010038	0.89365524	A	0.9035604	A	0.993157781575431	0	lncRNA	TCONS_00028388	NA	NA	NA	NA	XLOC_013743	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013743), lincRNA [TCONS_00028388]"	chr20:39323177-39323118	hs|20q12	Agilent_HUMAN_G3V2	TCONS_00028388	TCONS_00028388	chr20	 39323118	 39323177	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004243	1.3229904	A	0.90164834	A	1.33917273441632	0	lncRNA	TCONS_00009928	NA	NA	NA	NA	XLOC_004353	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004353), lincRNA [TCONS_00009928]"	chr5:40389814-40389873	hs|5p13.1	Agilent_HUMAN_G3V2	TCONS_00009928	TCONS_00009928	chr5	 40389814	 40389873	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12593_PI429285431	0.9010003	A	0.8995931	A	1.00097587256656	0	lncRNA	14206-1_{1..342}	lnc-SPATA6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPATA6-1:1	chr1	 48730415	 48730756	-	lnc-SPATA6-1	lnc-SPATA6-1:1	XLOC_000828	linc-LOC388630-3	NA	NA	NA	inter
LNCA_21_P0007916	7.3641214	P	7.508969	P	0.904474917292794	0	lncRNA	XR_109147	XR_109147	XR_109147	NA	Hs.594844	DNAJC3-AS1	DNAJC3 antisense RNA 1 (non-protein coding)	NA	THC2497762	NA	"PREDICTED: Homo sapiens DNAJC3 antisense RNA 1 (non-protein coding) (DNAJC3-AS1), miscRNA [XR_109147]"	chr13:96325258-96325199	hs|13q32.1	Agilent_HUMAN_G3V2	XR_109147	XR_109147	chr13	 96325199	 96325258	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20024_PI429285431	2.3970008	A	2.8879268	A	0.711568228073078	0	lncRNA	21677-1_{1..567}	lnc-LEKR1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LEKR1-4:3	chr3	157002767	157003333	+	lnc-LEKR1-4	lnc-LEKR1-4:3	ENSG00000243176.1	RP11-550I24.2	VEPH1	NA	chr3:156992767-157013080	inner
LNCA_21_P0013523	7.5162253	P	7.334554	P	1.13419704290159	0	lncRNA	ENST00000524003	XR_108865	XR_108865	NA	Hs.627611	XLOC_l2_014585	NA	ENST00000524003	THC2606178	NA	"PREDICTED: Homo sapiens hypothetical LOC100506365, transcript variant 2 (LOC100506365), miscRNA [XR_108865]"	chr8:92081866-92081807	hs|8q21.3	Agilent_HUMAN_G3V2	ENST00000524003	ENST00000524003	chr8	 92081807	 92081866	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002841	2.9306564	P	3.5411508	P	0.654972209751266	0	lncRNA	ENST00000424242	NA	NA	NA	NA	XLOC_003057	NA	ENST00000424242	NA	NA	"BROAD Institute lincRNA (XLOC_003057), lincRNA [TCONS_00005746]"	chr3:14689763-14689704	hs|3p25.1	Agilent_HUMAN_G3V2	ENST00000424242	ENST00000424242	chr3	 14689704	 14689763	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37658_PI429285431	7.9562473	P	7.573029	P	1.30424807135949	0	lncRNA	38751-1_{1..671}	n346140|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1690|NULL|-1.3353800|-0.1154256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346140|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1690|NULL|-1.3353800|-0.1154256	chr2	 43263655	 43264325	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001651	0.8818616	A	0.8744416	A	1.00515640079005	0	lncRNA	TCONS_00001897	NA	NA	NA	NA	XLOC_001285	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001285), lincRNA [TCONS_00001897]"	chr1:244129440-244129381	hs|1q44	Agilent_HUMAN_G3V2	TCONS_00001897	TCONS_00001897	chr1	244129381	244129440	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37482_PI429285431	1.3536769	A	2.5823019	A	0.426723953081115	0	lncRNA	38582-1_{1..983}	n345941|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1490|NULL|-1.2934300|-0.3305175	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345941|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1490|NULL|-1.2934300|-0.3305175	chr7	 23514146	 23515128	+	NA	NA	NA	NA	IGF2BP3	NA	chr7:23504146-23509995	inter
LNCA_21_P0004799	0.883484	A	0.8745142	A	1.00623675967809	0	lncRNA	ENST00000454317	NA	NA	NA	NA	XLOC_005906	NA	ENST00000454317	NA	NA	"BROAD Institute lincRNA (XLOC_005906), lincRNA [TCONS_00011606]"	chr6:161236799-161236740	hs|6q26	Agilent_HUMAN_G3V2	ENST00000454317	ENST00000454317	chr6	161236740	161236799	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13216_PI429285431	1.7257789	A	1.8629562	A	0.909296496945269	0	lncRNA	14844-1_{1..551}	lnc-ERI1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERI1-2:1	chr8	  9014281	  9014831	+	lnc-ERI1-2	lnc-ERI1-2:1	XLOC_006704	linc-TNKS-3	PPP1R3B	NA	chr8:9004281-9009152	inter
LNCA_21_P0002785	1.2264651	A	0.87487584	A	1.27596544557323	0	lncRNA	ENST00000462300	NA	NA	NA	NA	XLOC_002881	NA	ENST00000462300	NA	NA	"BROAD Institute lincRNA (XLOC_002881), lincRNA [TCONS_00005628]"	chr3:153095085-153095144	hs|3q25.2	Agilent_HUMAN_G3V2	ENST00000462300	ENST00000462300	chr3	153095085	153095144	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008164	2.281345	A	1.1307726	A	2.22001957872344	0	lncRNA	TCONS_00022023	NA	NA	NA	NA	XLOC_010617	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010617), lincRNA [TCONS_00022023]"	chr13:51894106-51894047	hs|13q14.3	Agilent_HUMAN_G3V2	TCONS_00022023	TCONS_00022023	chr13	 51894047	 51894106	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25926_PI429285431	0.9527914	A	0.91689616	A	1.02519279173521	0	lncRNA	27445-1_{1..543}	lnc-SLC38A8-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC38A8-2:3	chr16	 83837274	 83837816	-	lnc-SLC38A8-2	lnc-SLC38A8-2:3	ENSG00000260228.1	RP11-483P21.2	CDH13	NA	chr16:83827274-83830215	inter
CUST_37900_PI429285431	4.445725	P	4.184721	P	1.1983123437621	0	lncRNA	38989-1_{1..1179}	n346438|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1988|NULL|-1.4186100|-0.3291785	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346438|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1988|NULL|-1.4186100|-0.3291785	chr3	119382856	119384034	-	NA	NA	NA	NA	COX17	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90chr3:119388372-119394615"	NA	inter
CUST_48254_PI429285431	0.8958112	A	1.5328834	A	0.643016561000665	0	lncRNA	52116-1_{1..1708}	hg19_lincRNAsTranscripts_TCONS_l2_00000030 range=chr1:995080-1002533 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000030 range=chr1:995080-1002533 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	   995080	   996787	+	NA	NA	NA	NA	AGRN	NA	chr1:985080-991492	inter
LNCA_21_P0007623	0.9241839	A	0.9689346	A	0.969457326231171	0	lncRNA	TCONS_00020559	NA	NA	NA	NA	XLOC_009873	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009873), lincRNA [TCONS_00020559]"	chr12:108826072-108826131	hs|12q23.3	Agilent_HUMAN_G3V2	TCONS_00020559	TCONS_00020559	chr12	108826072	108826131	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15874_PI429285431	0.914039	A	0.9272105	A	0.990911761882904	0	lncRNA	17564-1_{1..493}	lnc-PTPRU-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTPRU-4:2	chr1	 30464675	 30465167	+	lnc-PTPRU-4	lnc-PTPRU-4:2	XLOC_000116	linc-ZCCHC17-7	NA	NA	NA	inter
CUST_834_PI429285431	3.8669798	P	4.31725	P	0.73190575770048	0	lncRNA	828-1_{1..795}	"transcript_id ""ENST00000586769.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586769.1"" | genecode_v17"	chr2	 35056445	 35057239	+	ENSG00000226994.2	ENST00000586769.1	AC012593.1	AC012593.1-008	NA	NA	NA	inter
CUST_12586_PI429285431	1.2194105	A	1.1838326	A	1.02496731171824	0	lncRNA	14197-1_{1..353}	lnc-TMEM206-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM206-5:5	chr1	212406670	212407022	-	lnc-TMEM206-5	lnc-TMEM206-5:5	XLOC_001191	linc-INTS7	NA	NA	NA	inter
CUST_30726_PI429285431	7.303566	P	7.541722	P	0.847828283190117	0	lncRNA	32509-1_{1..407}	n336277|Y11999|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325685|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325685|1.6741700|-0.1881539	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336277|Y11999|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325685|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325685|1.6741700|-0.1881539	chr19	 41239186	 41239592	+	NA	NA	NA	NA	C19orf54	NA	chr19:41246761-41255414	inner
LNCA_21_P0013520	3.2265496	P	3.2826219	P	0.961879249319665	0	lncRNA	TCONS_l2_00028267	NA	NA	NA	NA	XLOC_l2_014566	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014566), lincRNA [TCONS_l2_00028267]"	chr8:82539090-82539031	hs|8q21.13	Agilent_HUMAN_G3V2	TCONS_l2_00028267	TCONS_l2_00028267	chr8	 82539031	 82539090	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3544_PI429285431	0.9181609	A	1.3128104	A	0.76067415850487	0	lncRNA	3514-1_{1..966}	"transcript_id ""ENST00000427080.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427080.1"" | genecode_v17"	chr9	132020633	132021598	+	ENSG00000235007.2	ENST00000427080.1	RP11-344B5.4	RP11-344B5.4-001	NA	NA	NA	inter
CUST_10816_PI429285431	1.4129006	A	2.614014	A	0.434939487509859	0	lncRNA	12351-1_{1..686}	lnc-ANTXRL-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANTXRL-1:7	chr10	 47696456	 47697141	+	lnc-ANTXRL-1	lnc-ANTXRL-1:7	XLOC_008480	linc-ANXA8L2-1	NA	NA	NA	inter
CUST_3618_PI429285431	1.1328359	A	1.6497625	A	0.698859040874617	0	lncRNA	3588-1_{1..677}	"transcript_id ""ENST00000456526.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456526.1"" | genecode_v17"	chr10	  9012088	  9012764	+	ENSG00000223808.1	ENST00000456526.1	RP11-428L9.2	RP11-428L9.2-001	NA	NA	NA	inter
CUST_35760_PI429285431	3.831675	P	4.035476	P	0.86825998390149	0	lncRNA	37180-1_{1..1052}	n342972|NULL|mRNAlikelncRNA|Homosapiens|ST7OT|lncRNAdb|342972|http://lncrnadb.com/Detail.aspx?TKeyID=204|-1.3212100|-0.2387331	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n342972|NULL|mRNAlikelncRNA|Homosapiens|ST7OT|lncRNAdb|342972|http://lncrnadb.com/Detail.aspx?TKeyID=204|-1.3212100|-0.2387331	NA	NA	     1051	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48997_PI429285431	2.6815498	A	2.8200674	A	0.908452129896005	0	lncRNA	52829-1_{1..2493}	hg19_lincRNAsTranscripts_TCONS_l2_00019714 range=chr3:197319997-197354485 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019714 range=chr3:197319997-197354485 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	197319997	197322489	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3332541	0.89539474	A	0.90591985	A	0.992731096878957	0	lncRNA	XR_115032	NA	XR_115032	NA	Hs.722116	NA	NA	NA	NA	NA	"PREDICTED: Homo sapiens transmembrane protein 148 (TMEM148), miscRNA [XR_115032]"	chr16:85316459-85316518	hs|16q24.1	Agilent_HUMAN_G3V2	XR_115032	XR_115032	chr16	 85316459	 85316518	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010659	0.89336014	A	0.9031135	A	0.993262286878897	0	lncRNA	TCONS_l2_00001572	NA	NA	NA	NA	XLOC_l2_001153	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001153), lincRNA [TCONS_l2_00001572]"	chr1:158164601-158164542	hs|1q23.1	Agilent_HUMAN_G3V2	TCONS_l2_00001572	TCONS_l2_00001572	chr1	158164542	158164601	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48869_PI429285431	5.0766687	P	4.7484612	P	1.25545254757699	0	lncRNA	52705-1_{1..692}	hg19_lincRNAsTranscripts_TCONS_l2_00018487 range=chr3:28777407-28799151 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018487 range=chr3:28777407-28799151 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	 28777407	 28778098	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006275	6.7439656	P	6.7208242	P	1.01616973393642	0	lncRNA	TCONS_00016345	NA	NA	NA	NA	XLOC_007726	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007726), lincRNA [TCONS_00016345]"	chr9:72432208-72432149	hs|9q21.12	Agilent_HUMAN_G3V2	TCONS_00016345	TCONS_00016345	chr9	 72432149	 72432208	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009271	7.0108943	P	6.8018575	P	1.15591619107655	0	lncRNA	TCONS_00025483	NA	NA	NA	NA	XLOC_012304	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012304), lincRNA [TCONS_00025483]"	chr17:72377281-72377340	hs|17q25.1	Agilent_HUMAN_G3V2	TCONS_00025483	TCONS_00025483	chr17	 72377281	 72377340	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52064_PI429285431	1.0897464	A	0.890475	A	1.14811837773626	0	lncRNA	55594-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017926 range=chr22:23701773-23725562 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017926 range=chr22:23701773-23725562 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 23701773	 23704772	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001152	8.479281	P	8.65094	P	0.887821160711679	0	lncRNA	ENST00000436200	NA	NA	NA	NA	XLOC_000918	NA	ENST00000436200	NA	NA	"BROAD Institute lincRNA (XLOC_000918), lincRNA [TCONS_00000566]"	chr1:93791401-93777157	hs|1p22.1	Agilent_HUMAN_G3V2	ENST00000436200	ENST00000436200	chr1	 93777157	 93791401	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8014_PI429285431	4.992675	P	5.2651157	P	0.827917718708861	0	lncRNA	9626-1_{1..1703}	lnc-ANP32E-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANP32E-1:1	chr1	150130744	150132446	-	lnc-ANP32E-1	lnc-ANP32E-1:1	ENSG00000245214	ENST00000430673	PLEKHO1	"hg19_refFlat_PLEKHO1:range=chr1:150122448-1501317185'pad=0,hg19_refFlat_PLEKHO1:range=chr1:150122448-1501317185'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.60chr1:150122170-150131825"	NA	inner
LNCA_21_P0008056	8.476416	P	8.468076	P	1.00579758882887	0	lncRNA	TCONS_00021766	NA	NA	NA	NA	XLOC_010361	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010361), lincRNA [TCONS_00021766]"	chr13:42080253-42080312	hs|13q14.11	Agilent_HUMAN_G3V2	TCONS_00021766	TCONS_00021766	chr13	 42080253	 42080312	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7112_PI429285431	5.6502485	P	5.9717937	P	0.800212350187191	0	lncRNA	7048-1_{1..326}	"transcript_id ""ENST00000426367.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426367.1"" | genecode_v17"	chrX	123093083	123093408	-	ENSG00000232412.1	ENST00000426367.1	RP1-315G1.3	RP1-315G1.3-001	STAG2	NA	chrX:123094475-123105191	inner
CUST_43822_PI429285431	8.617639	P	9.022525	P	0.755295972988708	0	lncRNA	48546-1_{1..2212}	"gi|388596716|ref|NR_049788.1| Homo sapiens sorting nexin 17 (SNX17), transcript variant 11, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388596716|ref|NR_049788.1| Homo sapiens sorting nexin 17 (SNX17), transcript variant 11, non-coding RNA"	Chr2	 27593363	 27595574	+	9784	NR_049788.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0005842	5.823153	P	5.7587123	P	1.04567947509298	0	lncRNA	ENST00000526470	NA	AK126694	NA	Hs.640163	XLOC_007095	NA	ENST00000526470	THC2514098	NA	"BROAD Institute lincRNA (XLOC_007095), lincRNA [TCONS_00015021]"	chr8:61545783-61545724	hs|8q12.1	Agilent_HUMAN_G3V2	ENST00000526470	ENST00000526470	chr8	 61545724	 61545783	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18972_PI429285431	0.8980416	A	0.8995224	A	0.998974114235999	0	lncRNA	20664-1_{1..552}	lnc-MEIS1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MEIS1-3:4	chr2	 66922335	 66922886	+	lnc-MEIS1-3	lnc-MEIS1-3:4	ENSG00000232046	AC007392.3	NA	NA	NA	inter
LNCA_33_P3258772	0.8820342	A	0.8744244	A	1.00528864719651	0	lncRNA	XR_108400	XR_108400	XR_108400	100506816	NA	LOC100506816	uncharacterized LOC100506816	ENST00000412133	THC2658861	NA	"PREDICTED: Homo sapiens hypothetical LOC100506816 (LOC100506816), miscRNA [XR_108400]"	chr2:178587952-178588011	hs|2q31.2	Agilent_HUMAN_G3V2	XR_108400	XR_108400	chr2	178587952	178588011	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33601_PI429285431	0.88853955	A	0.87964064	A	1.00618731723228	0	lncRNA	35166-1_{1..340}	n340357|AF009271|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2818|NULL|-1.1889100|-0.4105332	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340357|AF009271|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2818|NULL|-1.1889100|-0.4105332	chr5	  9299091	  9299430	-	NA	NA	NA	NA	SEMA5A	NA	chr5:9289091-9309431	inner
LNCA_21_P0001202	3.0503333	P	2.8621829	A	1.13930214252322	0	lncRNA	ENST00000412174	NA	NA	NA	NA	XLOC_001115	NA	ENST00000412174	THC2654760	NA	"BROAD Institute lincRNA (XLOC_001115), lincRNA [TCONS_00000695]"	chr1:182096494-182096435	hs|1q25.3	Agilent_HUMAN_G3V2	ENST00000412174	ENST00000412174	chr1	182096435	182096494	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29396_PI429285431	1.6891992	A	1.4371594	A	1.19088970229302	0	lncRNA	31150-1_{1..737}	n332740|AF016694|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062405|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062405|2.3308900|-0.1032840	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332740|AF016694|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000062405|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000062405|2.3308900|-0.1032840	chr7	100677703	100678439	+	NA	NA	NA	NA	MUC17	NA	chr7:100667703-100690561	inner
CUST_22618_PI429285431	4.261905	P	5.0709157	P	0.570773120309052	0	lncRNA	24204-1_{1..435}	lnc-C9orf53-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C9orf53-1:1	chr9	 21995602	 21996036	+	lnc-C9orf53-1	lnc-C9orf53-1:1	ENSG00000266446.1	RP11-149I2.4	CDKN2A	NA	chr9:21985602-21994490	inter
LNCA_21_P0009585	3.7200565	P	3.9696026	P	0.841161019290466	0	lncRNA	TCONS_00026571	NA	NA	NA	NA	XLOC_012890	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012890), lincRNA [TCONS_00026571]"	chr18:73838021-73837962	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026571	TCONS_00026571	chr18	 73837962	 73838021	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5453_PI429285431	0.9011909	A	0.90439874	A	0.997778964904973	0	lncRNA	5387-1_{1..1666}	"transcript_id ""ENST00000567401.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567401.1"" | genecode_v17"	chr16	 22621852	 22623517	-	ENSG00000260973.1	ENST00000567401.1	RP11-105C19.2	RP11-105C19.2-001	NA	NA	NA	inter
CUST_25038_PI429285431	1.1223776	A	0.88671106	A	1.17745060590588	0	lncRNA	26577-1_{1..392}	lnc-OR5H6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR5H6-1:1	chr3	 98176539	 98176930	+	lnc-OR5H6-1	lnc-OR5H6-1:1	ENSG00000251088.1	RP11-325B23.2	OR5K1	NA	chr3:98166539-98186742	inter
CUST_42311_PI429285431	9.3736105	P	9.184259	P	1.14025105102606	0	lncRNA	44937-1_{1..65}	ENST00000383875 ncrna:snoRNA chromosome:GRCh37:18:47017653:47017717:-1 gene:ENSG00000206602 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000383875 ncrna:snoRNA chromosome:GRCh37:18:47017653:47017717:-1 gene:ENSG00000206602 gene_biotype:snoRNA transcript_biotype:snoRNA	chr18	 47017653	 47017717	-	ENSG00000206602	ENST00000383875	NA	NA	RPL17-C18ORF32	NA	chr18:47007653-47018935	inter
LNCA_21_P0002547	0.9243978	A	0.97511595	A	0.9654556212697	0	lncRNA	TCONS_00004599	NA	NA	NA	NA	XLOC_002505	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002505), lincRNA [TCONS_00004599]"	chr2:227150516-227150457	hs|2q36.3	Agilent_HUMAN_G3V2	TCONS_00004599	TCONS_00004599	chr2	227150457	227150516	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012178	0.92429805	A	1.118704	A	0.873932675925935	0	lncRNA	TCONS_l2_00017125	NA	NA	NA	NA	XLOC_l2_009129	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009129), lincRNA [TCONS_l2_00017125]"	chr21:10186629-10186570	hs|21p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00017125	TCONS_l2_00017125	chr21	 10186570	 10186629	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24470_PI429285431	1.7246941	A	0.9524018	A	1.70798144258991	0	lncRNA	26023-1_{1..526}	lnc-CGN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CGN-1:1	chr1	151534200	151534725	+	lnc-CGN-1	lnc-CGN-1:1	ENSG00000232536.1	RP11-74C1.4	TUFT1	NA	chr1:151524200-151544331	inner
CUST_47869_PI429285431	1.5555341	A	1.2993643	A	1.19430374404364	0	lncRNA	51768-1_{1..1513}	"gi|410171334|ref|XR_171197.1| PREDICTED: Homo sapiens gonadotropin-releasing hormone II receptor-like (LOC101060623), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171334|ref|XR_171197.1| PREDICTED: Homo sapiens gonadotropin-releasing hormone II receptor-like (LOC101060623), misc_RNA"	NA	NA	NA	NA	NA	XR_171197.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006293	3.3303745	P	3.210886	P	1.0863496346445	0	lncRNA	ENST00000423380	XR_108974	XR_108974	NA	Hs.710070	XLOC_007775	NA	ENST00000423380	THC2635199	NA	"PREDICTED: Homo sapiens hypothetical LOC100507103 (LOC100507103), miscRNA [XR_108974]"	chr9:93867587-93867528	hs|9q22.2	Agilent_HUMAN_G3V2	ENST00000423380	ENST00000423380	chr9	 93867528	 93867587	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20613_PI429285431	1.3567674	A	1.855895	A	0.707534499096547	0	lncRNA	22252-1_{1..571}	lnc-DNASE1L3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DNASE1L3-1:2	chr3	 58150811	 58151381	-	lnc-DNASE1L3-1	lnc-DNASE1L3-1:2	ENSG00000244161.1	FLNB-AS1	FLNB	NA	chr3:58140811-58157982	inner
CUST_11021_PI429285431	1.6050335	A	2.2732024	A	0.629304908103784	0	lncRNA	12567-1_{1..443}	lnc-TPST1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPST1-1:4	chr7	 65960242	 65960684	+	lnc-TPST1-1	lnc-TPST1-1:4	XLOC_006133	linc-KCTD7-2	NA	NA	NA	inter
LNCA_21_P0004493	1.0446225	A	0.8979684	A	1.10699913898244	0	lncRNA	TCONS_00010648	NA	NA	NA	NA	XLOC_004322	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004322), lincRNA [TCONS_00010648]"	chr5:25259091-25260733	hs|5p14.1	Agilent_HUMAN_G3V2	TCONS_00010648	TCONS_00010648	chr5	 25259091	 25260733	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51485_PI429285431	0.97869474	A	0.8964584	A	1.05865780830382	0	lncRNA	55061-1_{1..909}	hg19_lincRNAsTranscripts_TCONS_l2_00010170 range=chr16:53399373-53404817 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010170 range=chr16:53399373-53404817 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 53399373	 53400281	-	NA	NA	NA	NA	LOC643802	NA	chr16:53403274-53405041	inner
LNCA_21_P0010063	5.012332	P	4.761316	P	1.1900448942537	0	lncRNA	TCONS_00028450	NA	NA	NA	NA	XLOC_013809	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013809), lincRNA [TCONS_00028450]"	chr20:55043212-55039455	hs|20q13.31	Agilent_HUMAN_G3V2	TCONS_00028450	TCONS_00028450	chr20	 55039455	 55043212	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002832	4.6512866	P	4.2828975	P	1.29091060670211	0	lncRNA	ENST00000426697	NA	NA	NA	NA	XLOC_003014	NA	ENST00000426697	NA	NA	"BROAD Institute lincRNA (XLOC_003014), lincRNA [TCONS_00005722]"	chr3:95106-95047	hs|3p26.3	Agilent_HUMAN_G3V2	ENST00000426697	ENST00000426697	chr3	    95047	    95106	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44895_PI429285431	0.88536793	A	0.8801664	A	1.00361193322015	0	lncRNA	49416-2_{3001..3992}	"gi|336285458|ref|NR_038831.1| Homo sapiens HOXA cluster antisense RNA 3 (HOXA-AS3), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,lncrnadb20130808,NONCODERv3,ncbi,"	">gi|336285458|ref|NR_038831.1| Homo sapiens HOXA cluster antisense RNA 3 (HOXA-AS3), transcript variant 1, non-coding RNA"	Chr7	 27189782	 27190773	+	100133311	NR_038831.1	NA	NA	NA	"hg19_refFlat_HOXB6:range=chr17:46673775-466755125'pad=0,hg19_refFlat_HOXB6:range=chr17:46673775-466755125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_HOXC6:range=chr12:54422552-544237465'pad=0,hg19_refFlat_HOXC6:range=chr12:54422552-544237465'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_HOXC6:range=chr12:54422306-544237465'pad=0,hg19_refFlat_HOXC6:range=chr12:54422306-544237465'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_HOXB4:range=chr17:46654084-466556815'pad=0,hg19_refFlat_HOXB4:range=chr17:46654084-466556815'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_HOXA6:range=chr7:27185277-271873685'pad=0,hg19_refFlat_HOXA6:range=chr7:27185277-271873685'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_HOXA7:range=chr7:27194528-271961645'pad=0,hg19_refFlat_HOXA7:range=chr7:27194528-271961645'pad=0 3'pad=0 strand=- repeatMasking=none,-106.00;hg19_refFlat_HMX1:range=chr4:8869419-88733405'pad=0,hg19_refFlat_HMX1:range=chr4:8869419-88733405'pad=0 3'pad=0 strand=- repeatMasking=none,-55.80;hg19_refFlat_HOXB5:range=chr17:46669571-466710445'pad=0,hg19_refFlat_HOXB5:range=chr17:46669571-466710445'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_26445_PI429285431	2.0069115	A	3.239131	A	0.425662086246284	0	lncRNA	27953-1_{1..569}	lnc-ALDH2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ALDH2-1:1	chr12	112251015	112251583	+	lnc-ALDH2-1	lnc-ALDH2-1:1	ENSG00000257877.1	RP3-462E2.3	ALDH2	"hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20chr12:112241015-112247789"	NA	inter
LNCA_21_P0001100	3.3902438	P	2.3795078	A	2.01493877171323	0	lncRNA	ENST00000441809	NA	NA	NA	NA	XLOC_000707	NA	ENST00000441809	NA	NA	"BROAD Institute lincRNA (XLOC_000707), lincRNA [TCONS_00000470]"	chr1:13986185-13986126	hs|1p36.21	Agilent_HUMAN_G3V2	ENST00000441809	ENST00000441809	chr1	 13986126	 13986185	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41613_PI429285431	0.9121616	A	2.3485303	A	0.369496166067319	0	lncRNA	42984-1_{1..81}	ENST00000384889 ncrna:miRNA chromosome:GRCh37:X:151127050:151127130:-1 gene:ENSG00000207621 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384889 ncrna:miRNA chromosome:GRCh37:X:151127050:151127130:-1 gene:ENSG00000207621 gene_biotype:miRNA transcript_biotype:miRNA	chrX	151127050	151127130	-	ENSG00000207621	ENST00000384889	NA	NA	GABRE	NA	chrX:151121596-151137130	inner
CUST_7883_PI429285431	1.9113749	A	2.5644565	A	0.635920534174107	0	lncRNA	9502-1_{1..3000}	lnc-FH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FH-1:1	chr1	241506602	241509601	-	lnc-FH-1	lnc-FH-1:1	ENSG00000248169	ENST00000515837	RGS7	"hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0,hg19_refFlat_C13orf45:range=chr13:76445263-764572385'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00chr1:241496602-241520478"	NA	inner
CUST_16358_PI429285431	7.179342	P	7.33313	P	0.89888720586652	0	lncRNA	18056-3_{6001..6547}	lnc-FANCI-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-FANCI-2:7	chr15	 89944259	 89944805	+	lnc-FANCI-2	lnc-FANCI-2:7	XLOC_011345	linc-C15orf42-2	NA	NA	NA	inter
CUST_40411_PI429285431	1.5327039	A	1.6753129	A	0.905879461699205	0	lncRNA	41196-1_{1..2270}	n409277|NR_033488_4|lncRNA|Homosapiens||RefGeneNoncode|NR_033488_4||-0.0894750|-0.2596729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409277|NR_033488_4|lncRNA|Homosapiens||RefGeneNoncode|NR_033488_4||-0.0894750|-0.2596729	chr6	  2997615	  2999884	-	NA	NA	NA	NA	NQO2	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50chr6:3000067-3019994"	NA	inner
CUST_34202_PI429285431	11.277778	P	11.147167	P	1.09475724694138	0	lncRNA	35716-2_{3001..5317}	n341056|AL137634|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3522|NULL|-0.5440220|-0.1624828	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341056|AL137634|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3522|NULL|-0.5440220|-0.1624828	chr11	 67779908	 67782224	-	NA	NA	NA	NA	UNC93B1	NA	chr11:67766908-67771593	inner
CUST_39156_PI429285431	11.162738	P	10.910458	P	1.19108799473365	0	lncRNA	40133-1_{1..1003}	n385813|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004eqf.2||2.0990600|-0.3912820	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385813|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004eqf.2||2.0990600|-0.3912820	chrX	114952661	114953663	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22112_PI429285431	3.4319315	P	3.138472	A	1.22557561696651	0	lncRNA	23717-1_{1..568}	lnc-POLE2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POLE2-1:1	chr14	 50175041	 50175608	-	lnc-POLE2-1	lnc-POLE2-1:1	ENSG00000258400.1	RP11-831F12.2	KLHDC1	"hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-13.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10chr14:50165041-50185510"	NA	inner
LNCA_21_P0011481	1.2414504	A	0.87754107	A	1.28690836558689	0	lncRNA	TCONS_l2_00010169	NA	NA	NA	NA	XLOC_l2_005489	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005489), lincRNA [TCONS_l2_00010169]"	chr16:53081035-53080976	hs|16q12.2	Agilent_HUMAN_G3V2	TCONS_l2_00010169	TCONS_l2_00010169	chr16	 53080976	 53081035	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30834_PI429285431	0.9237988	A	0.9567966	A	0.977387256850756	0	lncRNA	32622-1_{1..527}	n336791|Z98723|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328371|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328371|4.2825100|-0.0574832	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336791|Z98723|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328371|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328371|4.2825100|-0.0574832	chr14	106209226	106209752	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002428	0.9244343	A	1.5560564	A	0.64545029254064	0	lncRNA	ENST00000423797	NA	NA	NA	NA	XLOC_002063	NA	ENST00000423797	NA	NA	"BROAD Institute lincRNA (XLOC_002063), lincRNA [TCONS_00004221]"	chr2:42642671-42640890	hs|2p21	Agilent_HUMAN_G3V2	ENST00000423797	ENST00000423797	chr2	 42640890	 42642671	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002826	0.92454445	A	0.9749719	A	0.965650178136563	0	lncRNA	ENST00000457815	NA	NA	NA	NA	XLOC_002975	NA	ENST00000457815	NA	NA	"BROAD Institute lincRNA (XLOC_002975), lincRNA [TCONS_00005697]"	chr3:193826899-193826958	hs|3q29	Agilent_HUMAN_G3V2	ENST00000457815	ENST00000457815	chr3	193826899	193826958	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26685_PI429285431	1.2345533	A	1.4473879	A	0.862840260525964	0	lncRNA	28186-1_{1..214}	n198|AC005486|scaRNA|Homosapiens|U90|NONCODEv2.0|n198|NULL|-1.2455700|-0.2103929	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n198|AC005486|scaRNA|Homosapiens|U90|NONCODEv2.0|n198|NULL|-1.2455700|-0.2103929	chr7	151095034	151095247	+	NA	NA	NA	NA	WDR86	NA	chr7:151085034-151105248	inner
CUST_19306_PI429285431	0.9100583	A	1.1541615	A	0.844340487233565	0	lncRNA	20972-1_{1..638}	lnc-PTPN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-PTPN1-1:1	chr20	 49276403	 49277040	+	lnc-PTPN1-1	lnc-PTPN1-1:1	ENSG00000234693.1	RP4-530I15.6	NA	NA	NA	inter
CUST_42189_PI429285431	3.8706627	P	3.876423	P	0.996015224666945	0	lncRNA	44256-1_{1..97}	ENST00000384979 ncrna:miRNA chromosome:GRCh37:15:42491768:42491864:-1 gene:ENSG00000207712 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384979 ncrna:miRNA chromosome:GRCh37:15:42491768:42491864:-1 gene:ENSG00000207712 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 42491768	 42491864	-	ENSG00000207712	ENST00000384979	NA	NA	VPS39	NA	chr15:42481768-42500502	inner
LNCA_21_P0008234	1.8755734	A	0.9451628	A	1.90581832668236	0	lncRNA	TCONS_00022157	NA	NA	NA	NA	XLOC_010355	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010355), lincRNA [TCONS_00022157]"	chr13:40638484-40638543	hs|13q14.11	Agilent_HUMAN_G3V2	TCONS_00022157	TCONS_00022157	chr13	 40638484	 40638543	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010442	4.972774	P	4.964759	P	1.00557103547504	0	lncRNA	TCONS_00029702	NA	NA	NA	NA	XLOC_014378	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014378), lincRNA [TCONS_00029702]"	chr22:39608954-39608895	hs|22q13.1	Agilent_HUMAN_G3V2	TCONS_00029702	TCONS_00029702	chr22	 39608895	 39608954	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007768	2.091024	A	2.4502614	A	0.779576550286422	0	lncRNA	TCONS_00020938	NA	NA	NA	NA	XLOC_010209	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010209), lincRNA [TCONS_00020938]"	chr12:116200833-116200774	hs|12q24.21	Agilent_HUMAN_G3V2	TCONS_00020938	TCONS_00020938	chr12	116200774	116200833	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34577_PI429285431	7.3868785	P	7.4113846	P	0.983157120248837	0	lncRNA	36036-2_{3001..5051}	n341461|AL833160|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3931|NULL|-1.1175300|-0.1949417	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341461|AL833160|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3931|NULL|-1.1175300|-0.1949417	chr8	 22539525	 22541575	-	NA	NA	NA	NA	BIN3	NA	chr8:22526525-22526661	inter
LNCA_21_P0011697	2.2380161	A	1.314039	A	1.89733851345402	0	lncRNA	TCONS_l2_00012521	NA	NA	NA	NA	XLOC_l2_006718	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006718), lincRNA [TCONS_l2_00012521]"	chr19:37747399-37747458	hs|19q13.12	Agilent_HUMAN_G3V2	TCONS_l2_00012521	TCONS_l2_00012521	chr19	 37747399	 37747458	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012052	5.702407	P	5.5490294	P	1.11217021037746	0	lncRNA	TCONS_l2_00015638	NA	NA	NA	NA	XLOC_l2_007835	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007835), lincRNA [TCONS_l2_00015638]"	chr2:243064561-243065240	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_l2_00015638	TCONS_l2_00015638	chr2	243064561	243065240	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38930_PI429285431	9.126419	P	8.541805	P	1.49963770032229	0	lncRNA	39919-2_{3001..3131}	n385044|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qtb.2||2.3434700|-0.2386826	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385044|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qtb.2||2.3434700|-0.2386826	chr6	160517113	160517243	+	NA	NA	NA	NA	IGF2R	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-41.72;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr6:160504113-160527244"	NA	inner
CUST_13201_PI429285431	3.9970803	P	3.8652816	P	1.09565887792049	0	lncRNA	14829-1_{1..2339}	lnc-CCRN4L-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCRN4L-7:1	chr4	138676462	138678800	+	lnc-CCRN4L-7	lnc-CCRN4L-7:1	XLOC_003704	linc-CCRN4L-7	NA	NA	NA	inter
CUST_4259_PI429285431	3.5687926	P	2.3606327	A	2.3104276293937	0	lncRNA	4216-1_{1..2860}	"transcript_id ""ENST00000562518.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562518.1"" | genecode_v17"	chr12	 52203789	 52206648	+	ENSG00000260415.2	ENST00000562518.1	RP11-923I11.1	RP11-923I11.1-001	SCN8A	"hg19_refFlat_CHRDL2:range=chr11:74407543-744419335'pad=0,hg19_refFlat_CHRDL2:range=chr11:74407543-744419335'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80chr12:52193789-52202307"	NA	inner
CUST_19411_PI429285431	2.3569407	A	3.2172377	P	0.550839147922255	0	lncRNA	21073-1_{1..3000}	lnc-CTD-2517M22.14.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTD-2517M22.14.1-2:1	chr8	145742986	145745985	-	lnc-CTD-2517M22.14.1-2	lnc-CTD-2517M22.14.1-2:1	ENSG00000160957.7	RECQL4	C8orf82	NA	chr8:145751603-145753229	inner
CUST_4262_PI429285431	2.566025	A	5.872117	P	0.101103721001799	0	lncRNA	4219-1_{1..542}	"transcript_id ""ENST00000564531.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564531.1"" | genecode_v17"	chr12	 52452243	 52452784	-	ENSG00000259884.1	ENST00000564531.1	RP11-1100L3.8	RP11-1100L3.8-002	NR4A1	NA	chr12:52442243-52453291	inner
CUST_7875_PI429285431	3.559205	P	3.9497657	P	0.762833073599331	0	lncRNA	9496-1_{1..1935}	lnc-CLEC4M-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,UCSC,"	>lnc-CLEC4M-1:1	chr19	  7854646	  7856580	+	lnc-CLEC4M-1	lnc-CLEC4M-1:1	ENSG00000248217	CLEC4GP1	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-61.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-62.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00"	NA	inter
LNCA_21_P0009945	0.8822584	A	1.2655803	A	0.766670248159227	0	lncRNA	TCONS_00028126	NA	NA	NA	NA	XLOC_013485	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013485), lincRNA [TCONS_00028126]"	chr20:22599612-22599671	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028126	TCONS_00028126	chr20	 22599612	 22599671	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014834	4.8455076	P	4.4249043	P	1.33848716056851	0	lncRNA	XR_132692	XR_132692	XR_132692	NA	NA	LOC100652849	uncharacterized LOC100652849	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652849 (LOC100652849), miscRNA [XR_132692]"	chr4:129192070-129192129	hs|4q28.2	Agilent_HUMAN_G3V2	XR_132692	XR_132692	chr4	129192070	129192129	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25138_PI429285431	0.8823812	A	1.571167	A	0.620375750526907	0	lncRNA	26676-1_{1..420}	lnc-GPATCH2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPATCH2-1:1	chr1	217958304	217958723	-	lnc-GPATCH2-1	lnc-GPATCH2-1:1	ENSG00000234070.1	RP11-415L24.1	SPATA17	"hg19_refFlat_SPATA17:range=chr1:217804721-2180361965'pad=0,hg19_refFlat_SPATA17:range=chr1:217804721-2180361965'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80chr1:217948304-217968462"	NA	inner
CUST_30979_PI429285431	1.4529388	A	1.6813445	A	0.853577646229365	0	lncRNA	32767-1_{1..239}	n337131|AB212827|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383650|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383650|-1.0184700|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337131|AB212827|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383650|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383650|-1.0184700|-1.0000000	chr9	 98248106	 98248344	-	NA	NA	NA	NA	PTCH1	NA	chr9:98238106-98279247	inner
CUST_3373_PI429285431	0.91268337	A	0.9112796	A	1.00097349275443	0	lncRNA	3347-2_{3001..3844}	"transcript_id ""ENST00000568063.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568063.1"" | genecode_v17"	chr9	 19929092	 19929935	+	ENSG00000261402.1	ENST00000568063.1	RP11-378I6.1	RP11-378I6.1-001	NA	NA	NA	inter
CUST_38946_PI429285431	0.9061769	A	0.9097561	A	0.997522162531085	0	lncRNA	39932-2_{3001..3647}	n385114|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tcg.2||-0.7845570|-0.2144504	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385114|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tcg.2||-0.7845570|-0.2144504	chr7	 31150441	 31151087	+	NA	NA	NA	NA	ADCYAP1R1	NA	chr7:31137441-31151093	inner
CUST_18131_PI429285431	0.92207867	A	0.9139144	A	1.0056750833505	0	lncRNA	19866-1_{1..386}	lnc-CCDC82-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC82-4:1	chr11	 97940545	 97940930	-	lnc-CCDC82-4	lnc-CCDC82-4:1	XLOC_009531	linc-CCDC82-2	NA	NA	NA	inter
CUST_30264_PI429285431	3.486682	P	3.5256927	P	0.973322155317536	0	lncRNA	32039-1_{1..220}	n335146|AY289772|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251451|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251451|-1.1195800|-0.2962713	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335146|AY289772|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251451|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251451|-1.1195800|-0.2962713	chr2	 37415620	 37415839	-	NA	NA	NA	NA	CEBPZ	NA	chr2:37428772-37433225	inner
CUST_4322_PI429285431	1.2533419	A	1.0556118	A	1.14689244303026	0	lncRNA	4277-1_{1..408}	"transcript_id ""ENST00000549058.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549058.1"" | genecode_v17"	chr12	 73605192	 73605599	-	ENSG00000258109.1	ENST00000549058.1	RP11-314D7.4	RP11-314D7.4-001	NA	NA	NA	inter
CUST_4421_PI429285431	0.88437295	A	1.481784	A	0.660938962236334	0	lncRNA	4371-1_{1..540}	"transcript_id ""ENST00000548457.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548457.1"" | genecode_v17"	chr12	116014481	116015020	+	ENSG00000258280.1	ENST00000548457.1	RP11-1028N23.2	RP11-1028N23.2-001	NA	NA	NA	inter
CUST_35419_PI429285431	7.5529065	P	8.471304	P	0.529096397536368	0	lncRNA	36829-1_{1..449}	n342483|BC070351|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4977|NULL|-0.2790340|-0.1135132	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n342483|BC070351|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4977|NULL|-0.2790340|-0.1135132	chr16	 56651372	 56651820	+	NA	NA	NA	NA	MT1E	NA	chr16:56659585-56661024	inter
CUST_10997_PI429285431	1.4872797	A	0.880883	A	1.52245195416586	0	lncRNA	12541-2_{3001..4164}	lnc-POTEF-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-POTEF-4:1	chr2	130350819	130351982	-	lnc-POTEF-4	lnc-POTEF-4:1	XLOC_002317	linc-HS6ST1-4	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10"	NA	inter
CUST_23659_PI429285431	0.89209723	A	0.9688584	A	0.948183918618987	0	lncRNA	25224-2_{3001..3727}	lnc-DHRS7B-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DHRS7B-5:1	chr17	 20808531	 20809257	+	lnc-DHRS7B-5	lnc-DHRS7B-5:1	ENSG00000233098.3	RP11-344E13.3	CCDC144NL	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_RNASEH1:range=chr2:3593375-36058505'pad=0,hg19_refFlat_RNASEH1:range=chr2:3593375-36058505'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr17:20795531-20799453"	NA	inter
LNCA_21_P0003922	4.6983376	P	5.5513206	P	0.55363881600784	0	lncRNA	ENST00000510067	NA	BC032891	NA	NA	XLOC_004286	NA	ENST00000510067	THC2604864	NA	"BROAD Institute lincRNA (XLOC_004286), lincRNA [TCONS_00009235]"	chr5:8873904-8873963	hs|5p15.31	Agilent_HUMAN_G3V2	ENST00000510067	ENST00000510067	chr5	  8873904	  8873963	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013308	2.830141	A	2.1409025	A	1.6124322011548	0	lncRNA	TCONS_l2_00026593	NA	NA	NA	NA	XLOC_l2_013846	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013846), lincRNA [TCONS_l2_00026593]"	chr7:56949984-56949925	hs|7p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00026593	TCONS_l2_00026593	chr7	 56949925	 56949984	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26400_PI429285431	0.9085239	A	0.9126147	A	0.99716848982198	0	lncRNA	27907-1_{1..544}	lnc-MAX-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAX-2:1	chr14	 65769247	 65769790	-	lnc-MAX-2	lnc-MAX-2:1	ENSG00000258760.1	CTD-2509G16.5	NA	NA	NA	inter
LNCA_21_P0014757	0.92162204	A	0.96930945	A	0.967485932931384	0	lncRNA	XR_132507	XR_132507	XR_132507	NA	Hs.719310	LOC100506766	uncharacterized LOC100506766	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506766 (LOC100506766), miscRNA [XR_132507]"	chr5:1054899-1054840	hs|5p15.33	Agilent_HUMAN_G3V2	XR_132507	XR_132507	chr5	  1054840	  1054899	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005515	2.1777272	A	1.3469565	A	1.77863527072301	0	lncRNA	TCONS_00013892	NA	NA	NA	NA	XLOC_006529	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006529), lincRNA [TCONS_00013892]"	chr7:96250965-96250906	hs|7q21.3	Agilent_HUMAN_G3V2	TCONS_00013892	TCONS_00013892	chr7	 96250906	 96250965	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008082	1.5341637	A	0.95465696	A	1.49433824438017	0	lncRNA	TCONS_00021825	NA	NA	NA	NA	XLOC_010427	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010427), lincRNA [TCONS_00021825]"	chr13:74734626-74734685	hs|13q22.1	Agilent_HUMAN_G3V2	TCONS_00021825	TCONS_00021825	chr13	 74734626	 74734685	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13164_PI429285431	2.847913	A	2.2762792	A	1.48620569221863	0	lncRNA	14793-1_{1..476}	lnc-SCRG1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SCRG1-1:3	chr4	174291063	174291538	-	lnc-SCRG1-1	lnc-SCRG1-1:3	XLOC_004165	linc-HMGB2	SAP30	NA	chr4:174292093-174298683	inter
CUST_13539_PI429285431	1.5569497	A	1.2704206	A	1.21970233078346	0	lncRNA	15178-1_{1..313}	lnc-ARRDC4-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARRDC4-6:3	chr15	 97975021	 97975333	+	lnc-ARRDC4-6	lnc-ARRDC4-6:3	XLOC_011373	linc-ARRDC4-3	NA	"hg19_refFlat_ZNF182:range=chrX:47835566-478479955'pad=0,hg19_refFlat_ZNF182:range=chrX:47835566-478479955'pad=0 3'pad=0 strand=- repeatMasking=none,-60.70"	NA	inter
LNCA_21_P0014335	0.9001059	A	0.91222435	A	0.991635310880825	0	lncRNA	XR_109333	XR_109333	XR_109333	NA	Hs.149004	LOC100506559	uncharacterized LOC100506559	NA	THC2613719	NA	"PREDICTED: Homo sapiens hypothetical LOC100506559 (LOC100506559), miscRNA [XR_109333]"	chr16:87300923-87300864	hs|16q24.2	Agilent_HUMAN_G3V2	XR_109333	XR_109333	chr16	 87300864	 87300923	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26823_PI429285431	0.9061335	A	0.8997655	A	1.00442371712148	0	lncRNA	28336-1_{1..880}	n323892|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060660|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060660|-1.0593400|-0.1761559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323892|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060660|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060660|-1.0593400|-0.1761559	chrX	 39111482	 39112361	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33681_PI429285431	6.6845403	P	7.0047584	P	0.80094878468375	0	lncRNA	35242-1_{1..1972}	n340451|AK056832|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2912|NULL|0.0192542|-0.3332562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340451|AK056832|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2912|NULL|0.0192542|-0.3332562	chr17	   576935	   578906	-	NA	NA	NA	NA	VPS53	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60chr17:566935-588907"	NA	inner
LNCA_21_P0011867	9.844522	P	9.597013	P	1.18715556640756	0	lncRNA	TCONS_l2_00014098	NA	NA	NA	NA	XLOC_l2_007656	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007656), lincRNA [TCONS_l2_00014098]"	chr2:176881980-176882039	hs|2q31.1	Agilent_HUMAN_G3V2	TCONS_l2_00014098	TCONS_l2_00014098	chr2	176881980	176882039	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8177_PI429285431	0.89523906	A	0.8854818	A	1.00678613945964	0	lncRNA	9777-1_{1..1853}	lnc-GLCCI1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GLCCI1-2:2	chr7	  8383337	  8385189	+	lnc-GLCCI1-2	lnc-GLCCI1-2:2	ENSG00000229970	AC007128.1	NA	NA	NA	inter
LNCA_21_P0011153	1.5690179	A	0.87810135	A	1.61430876963328	0	lncRNA	TCONS_l2_00006951	NA	NA	NA	NA	XLOC_l2_003803	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003803), lincRNA [TCONS_l2_00006951]"	chr13:81270363-81270422	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_l2_00006951	TCONS_l2_00006951	chr13	 81270363	 81270422	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003172	6.8436327	P	7.054612	P	0.863950583401005	0	lncRNA	TCONS_00007259	NA	NA	NA	NA	XLOC_003243	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003243), lincRNA [TCONS_00007259]"	chr3:127752352-127752293	hs|3q21.3	Agilent_HUMAN_G3V2	TCONS_00007259	TCONS_00007259	chr3	127752293	127752352	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2787_PI429285431	4.2471294	P	4.7954245	P	0.683827762226156	0	lncRNA	2771-1_{1..633}	"transcript_id ""ENST00000602610.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602610.1"" | genecode_v17"	chr7	 27197963	 27198595	+	ENSG00000270182.1	ENST00000602610.1	RP1-170O19.21	RP1-170O19.21-001	HOXA9	NA	chr7:27202057-27205149	inter
LNCA_21_P0007114	5.8926435	P	5.628387	P	1.20101694001044	0	lncRNA	TCONS_00018591	NA	NA	NA	NA	XLOC_008927	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008927), lincRNA [TCONS_00018591]"	chr10:103522487-103522428	hs|10q24.32	Agilent_HUMAN_G3V2	TCONS_00018591	TCONS_00018591	chr10	103522428	103522487	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9512_PI429285431	0.903293	A	1.311538	A	0.753539477040672	0	lncRNA	11021-1_{1..686}	lnc-AC131097.4.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AC131097.4.1-1:1	chr2	242844648	242845333	-	lnc-AC131097.4.1-1	lnc-AC131097.4.1-1:1	XLOC_002558	linc-PDCD1-1	NA	NA	NA	inter
CUST_47427_PI429285431	1.0904586	A	0.8829997	A	1.1546526370727	0	lncRNA	51463-2_{3001..3586}	"gi|336455055|ref|NR_038876.1| Homo sapiens uncharacterized LOC100129027 (LOC100129027), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336455055|ref|NR_038876.1| Homo sapiens uncharacterized LOC100129027 (LOC100129027), non-coding RNA"	Chr21	 47250755	 47251340	-	100129027	NR_038876.1	NA	NA	NA	NA	NA	inter
CUST_13737_PI429285431	4.5508213	P	4.8111663	P	0.834888243905381	0	lncRNA	15380-1_{1..432}	lnc-ABCA5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABCA5-1:1	chr17	 67354962	 67355393	-	lnc-ABCA5-1	lnc-ABCA5-1:1	XLOC_012560	linc-ABCA5-6	MAP2K6	NA	chr17:67344962-67365360	inter
CUST_26681_PI429285431	4.7465134	P	5.338941	P	0.663225967796091	0	lncRNA	28178-1_{1..320}	n104|AB095269|snmRNA|Homosapiens|anti-U5-116KDA|NONCODEv2.0|n104|NULL|1.5312200|-0.1830741	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n104|AB095269|snmRNA|Homosapiens|anti-U5-116KDA|NONCODEv2.0|n104|NULL|1.5312200|-0.1830741	chr17	 42927836	 42928155	+	NA	NA	NA	NA	EFTUD2	NA	chr17:42927655-42938156	inner
LNCA_21_P0006453	0.92477417	A	0.97357696	A	0.966738236853595	0	lncRNA	ENST00000450860	NA	NA	NA	NA	XLOC_008180	NA	ENST00000450860	NA	NA	"BROAD Institute lincRNA (XLOC_008180), lincRNA [TCONS_00017066]"	chrX:70403507-70403448	hs|Xq13.1	Agilent_HUMAN_G3V2	ENST00000450860	ENST00000450860	chrX	 70403448	 70403507	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001619	10.629325	P	10.027765	P	1.51735641181764	0	lncRNA	THC2630478	NA	NA	NA	NA	XLOC_001195	NA	NA	THC2630478	NA	"BROAD Institute lincRNA (XLOC_001195), lincRNA [TCONS_00001810]"	chr1:212802635-212802576	hs|1q32.3	Agilent_HUMAN_G3V2	THC2630478	THC2630478	chr1	212802576	212802635	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22073_PI429285431	7.4158235	P	7.4245696	P	0.993956004316731	0	lncRNA	23679-1_{1..680}	lnc-CALCOCO2-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-CALCOCO2-8:1	chr17	 46622857	 46623536	+	lnc-CALCOCO2-8	lnc-CALCOCO2-8:1	ENSG00000230148.4	HOXB-AS1	HOXB3	"hg19_refFlat_HOXB2:range=chr17:46620430-466222735'pad=0,hg19_refFlat_HOXB2:range=chr17:46620430-466222735'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30chr17:46626232-46633449"	NA	inter
LNCA_21_P0008629	4.133144	P	4.5122113	P	0.768934544920641	0	lncRNA	TCONS_00023389	NA	NA	NA	NA	XLOC_011235	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011235), lincRNA [TCONS_00023389]"	chr15:44718117-44718496	hs|15q15.3	Agilent_HUMAN_G3V2	TCONS_00023389	TCONS_00023389	chr15	 44718117	 44718496	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39897_PI429285431	3.642741	P	3.5246072	P	1.08533002407743	0	lncRNA	40781-1_{1..2524}	n406598|NR_024117|lncRNA|Homosapiens||RefGeneNoncode|NR_024117||8.8285300|-0.1487206	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n406598|NR_024117|lncRNA|Homosapiens||RefGeneNoncode|NR_024117||8.8285300|-0.1487206	chr1	155715608	155718131	+	NA	NA	NA	NA	GON4L	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_GON4L:range=chr1:155720375-1558235715'pad=0,hg19_refFlat_GON4L:range=chr1:155720375-1558235715'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40chr1:155719510-155731369"	NA	inner
CUST_30433_PI429285431	1.0688448	A	1.1228534	A	0.963256151969775	0	lncRNA	32213-1_{1..529}	n335568|CR542028|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000268897|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000268897|2.5614300|-0.2414900	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335568|CR542028|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000268897|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000268897|2.5614300|-0.2414900	chr1	206941984	206942512	-	NA	NA	NA	NA	IL10	NA	chr1:206940948-206945839	inner
LNCA_21_P0004396	0.90199935	A	0.9946704	A	0.937784897133599	0	lncRNA	ENST00000431789	NA	NA	NA	NA	XLOC_004832	NA	ENST00000431789	NA	NA	"BROAD Institute lincRNA (XLOC_004832), lincRNA [TCONS_00010346]"	chr5:55833566-55833507	hs|5q11.2	Agilent_HUMAN_G3V2	ENST00000431789	ENST00000431789	chr5	 55833507	 55833566	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003066	1.436718	A	0.91292447	A	1.4377307585815	0	lncRNA	TCONS_00006322	NA	NA	NA	NA	XLOC_002938	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002938), lincRNA [TCONS_00006322]"	chr3:180589199-180589258	hs|3q26.33	Agilent_HUMAN_G3V2	TCONS_00006322	TCONS_00006322	chr3	180589199	180589258	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_383_PI429285431	3.7655241	P	3.6642385	P	1.07272895626471	0	lncRNA	375-1_{1..494}	"transcript_id ""ENST00000427872.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427872.1"" | genecode_v17"	chr1	120876495	120876988	-	ENSG00000227193.2	ENST00000427872.1	RP11-439A17.4	RP11-439A17.4-002	LOC100132314	"hg19_refFlat_HIST1H3A:range=chr6:26020718-260211285'pad=0,hg19_refFlat_HIST1H3A:range=chr6:26020718-260211285'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_HIST2H3C:range=chr1:149812319-1498127295'pad=0,hg19_refFlat_HIST2H3C:range=chr1:149812319-1498127295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_HIST1H3E:range=chr6:26225383-262257935'pad=0,hg19_refFlat_HIST1H3E:range=chr6:26225383-262257935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_HIST2H3D:range=chr1:149784826-1497852365'pad=0,hg19_refFlat_HIST2H3D:range=chr1:149784826-1497852365'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_HIST2H3C:range=chr1:149824217-1498246275'pad=0,hg19_refFlat_HIST2H3C:range=chr1:149824217-1498246275'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_HIST1H3H:range=chr6:27777852-277782625'pad=0,hg19_refFlat_HIST1H3H:range=chr6:27777852-277782625'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_HIST1H3D:range=chr6:26197068-261974785'pad=0,hg19_refFlat_HIST1H3D:range=chr6:26197068-261974785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_HIST3H3:range=chr1:228612616-2286130265'pad=0,hg19_refFlat_HIST3H3:range=chr1:228612616-2286130265'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_HIST2H3A:range=chr1:149812319-1498127295'pad=0,hg19_refFlat_HIST2H3A:range=chr1:149812319-1498127295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_HIST2H3A:range=chr1:149824217-1498246275'pad=0,hg19_refFlat_HIST2H3A:range=chr1:149824217-1498246275'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20chr1:120876495-120905159"	NA	inter
LNCA_21_P0006828	1.1171438	A	0.9033287	A	1.15975100791182	0	lncRNA	TCONS_00018111	NA	NA	NA	NA	XLOC_008372	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008372), lincRNA [TCONS_00018111]"	chr10:6667913-6667972	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018111	TCONS_00018111	chr10	  6667913	  6667972	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28577_PI429285431	0.8899777	A	0.88695383	A	1.00209818508103	0	lncRNA	30257-1_{1..2221}	n325938|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048976|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048976|-0.8377080|-0.2067176	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325938|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000048976|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000048976|-0.8377080|-0.2067176	chr10	 81194491	 81196711	-	NA	NA	NA	NA	ZCCHC24	NA	chr10:81184491-81205383	inner
CUST_34549_PI429285431	1.5002054	A	1.4749643	A	1.01764974526441	0	lncRNA	36010-1_{1..2027}	n341431|AK093862|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3901|NULL|-1.0738700|-0.2140596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341431|AK093862|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3901|NULL|-1.0738700|-0.2140596	chr13	110775554	110777580	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008631	2.8439062	A	0.8986926	A	3.85094788705745	0	lncRNA	TCONS_00023404	NA	NA	NA	NA	XLOC_011252	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011252), lincRNA [TCONS_00023404]"	chr15:52375799-52375858	hs|15q21.2	Agilent_HUMAN_G3V2	TCONS_00023404	TCONS_00023404	chr15	 52375799	 52375858	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50486_PI429285431	5.7307935	P	5.496921	P	1.17598731633107	0	lncRNA	54182-1_{1..2204}	hg19_lincRNAsTranscripts_TCONS_l2_00030287 range=chrX:100748513-100750788 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030287 range=chrX:100748513-100750788 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chrX	100748513	100750716	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_27451_PI429285431	1.3269061	A	1.290416	A	1.02561559205798	0	lncRNA	29021-1_{1..2052}	n324627|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000242845|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000242845|-1.1132500|-0.3826116	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324627|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000242845|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000242845|-1.1132500|-0.3826116	chr5	 95213691	 95215742	+	NA	NA	NA	NA	ELL2	"hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30chr5:95220802-95231593"	NA	inner
CUST_32862_PI429285431	1.2168441	A	0.89049035	A	1.25384042544553	0	lncRNA	34492-1_{1..3000}	n339524|BX537548|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1965|NULL|-0.9635880|-0.1266660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>n339524|BX537548|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1965|NULL|-0.9635880|-0.1266660	chr3	127199532	127202531	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_128_PI429201921	7.8152404	P	7.8030457	P	1.00848854704552	0	lncRNA	119-2_{3001..3494}	TC01006169.hg.1	TCONS_l2_00002788-XLOC_l2_001347 // Broad TUCP // linc-WNT9A chr1:-:228155358-228158853 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:228155358-228158853	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00002788-XLOC_l2_001347	linc-WNT9A	chr1	228155358	228158853	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47865_PI429285431	3.4753828	P	2.8721194	A	1.51914902308001	0	lncRNA	51766-1_{1..3000}	"gi|410171204|ref|XR_171193.1| PREDICTED: Homo sapiens myomegalin-like (LOC101060463), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171204|ref|XR_171193.1| PREDICTED: Homo sapiens myomegalin-like (LOC101060463), misc_RNA"	NA	NA	NA	NA	NA	XR_171193.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007062	1.084662	A	0.87795144	A	1.15405386278763	0	lncRNA	XR_110406	XR_110406	XR_110406	NA	Hs.170953	LOC100507008	uncharacterized LOC100507008	ENST00000432535	THC2624818	NA	"PREDICTED: Homo sapiens hypothetical LOC100507008 (LOC100507008), miscRNA [XR_110406]"	chr10:60761146-60761205	hs|10q21.1	Agilent_HUMAN_G3V2	XR_110406	XR_110406	chr10	 60761146	 60761205	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006415	4.957186	P	5.0056715	P	0.966950873688831	0	lncRNA	ENST00000449605	NA	AL832542	NA	Hs.246477	XLOC_007942	NA	ENST00000449605	THC2594327	NA	"BROAD Institute lincRNA (XLOC_007942), lincRNA [TCONS_00016971]"	chrX:21919828-21919887	hs|Xp22.11	Agilent_HUMAN_G3V2	ENST00000449605	ENST00000449605	chrX	 21919828	 21919887	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26241_PI429285431	4.3678746	P	4.6709785	P	0.810506746714926	0	lncRNA	27748-1_{1..400}	lnc-HSPH1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSPH1-4:2	chr13	 31506246	 31506645	-	lnc-HSPH1-4	lnc-HSPH1-4:2	ENSG00000228905.1	TEX26-AS1	C13orf26	NA	chr13:31506834-31516337	inter
CUST_26984_PI429285431	4.9119673	P	5.4532204	P	0.687173782499164	0	lncRNA	28510-1_{1..495}	n324075|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052552|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052552|-0.6307900|-0.2542593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324075|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052552|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052552|-0.6307900|-0.2542593	chr9	 70348276	 70348770	-	NA	NA	NA	NA	FOXD4L4	NA	chr9:70338276-70360852	inter
LNCA_21_P0012732	0.8827575	A	0.87439615	A	1.00581247342804	0	lncRNA	ENST00000506864	NA	NA	NA	NA	XLOC_l2_010751	NA	ENST00000506864	THC2750781	NA	"BROAD Institute lincRNA (XLOC_l2_010751), lincRNA [TCONS_l2_00020644]"	chr4:90472667-90508976	hs|4q22.1	Agilent_HUMAN_G3V2	ENST00000506864	ENST00000506864	chr4	 90472667	 90508976	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_463_PI429285431	1.423431	A	1.449146	A	0.982333633106593	0	lncRNA	454-1_{1..156}	"transcript_id ""ENST00000434098.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434098.1"" | genecode_v17"	chr1	157257493	157257648	-	ENSG00000237189.1	ENST00000434098.1	RP11-85G21.2	RP11-85G21.2-001	NA	NA	NA	inter
CUST_39147_PI429285431	11.262853	P	11.07489	P	1.13915416159215	0	lncRNA	40122-1_{1..1448}	n385777|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dyq.2||-0.9594620|-0.2596766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385777|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004dyq.2||-0.9594620|-0.2596766	chrX	 70279098	 70280545	-	NA	NA	NA	NA	SNX12	NA	chrX:70280788-70288231	inner
LNCA_21_P0014470	2.059351	A	1.8859861	A	1.12768560092699	0	lncRNA	XR_109960	XR_109960	XR_109960	NA	Hs.66163	LOC100131510	uncharacterized LOC100131510	NA	THC2484694	NA	"PREDICTED: Homo sapiens hypothetical LOC100131510 (LOC100131510), miscRNA [XR_109960]"	chr2:25593095-25593036	hs|2p23.3	Agilent_HUMAN_G3V2	XR_109960	XR_109960	chr2	 25593036	 25593095	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003398	1.7705785	A	0.87773335	A	1.85683439274989	0	lncRNA	ENST00000508291	NA	NA	NA	NA	XLOC_003680	NA	ENST00000508291	NA	NA	"BROAD Institute lincRNA (XLOC_003680), lincRNA [TCONS_00007610]"	chr4:124448618-124448677	hs|4q28.1	Agilent_HUMAN_G3V2	ENST00000508291	ENST00000508291	chr4	124448618	124448677	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003740	0.87501544	A	1.687273	A	0.56949001019904	0	lncRNA	ENST00000507190	NA	NA	NA	NA	XLOC_003934	NA	ENST00000507190	NA	NA	"BROAD Institute lincRNA (XLOC_003934), lincRNA [TCONS_00008471]"	chr4:41222180-41222121	hs|4p13	Agilent_HUMAN_G3V2	ENST00000507190	ENST00000507190	chr4	 41222121	 41222180	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014776	0.874172	A	0.8749867	A	0.999435452408991	0	lncRNA	XR_132552	XR_132552	XR_132552	NA	Hs.60681	LOC100288310	uncharacterized LOC100288310	NA	THC2601604	NA	"PREDICTED: Homo sapiens hypothetical LOC100288310 (LOC100288310), miscRNA [XR_132552]"	chr8:73860808-73860867	hs|8q13.3	Agilent_HUMAN_G3V2	XR_132552	XR_132552	chr8	 73860808	 73860867	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23621_PI429285431	1.1338296	A	1.5077422	A	0.771686835722685	0	lncRNA	25188-1_{1..263}	lnc-PGPEP1L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PGPEP1L-2:1	chr15	 99436696	 99436958	-	lnc-PGPEP1L-2	lnc-PGPEP1L-2:1	ENSG00000259621.1	RP11-654A16.1	IGF1R	NA	chr15:99426696-99446764	inner
CUST_42843_PI429285431	1.0196226	A	2.0431807	A	0.491901684281543	0	lncRNA	45884-1_{1..139}	ENST00000363750 ncrna:snoRNA chromosome:GRCh37:X:15734331:15734469:1 gene:ENSG00000200620 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363750 ncrna:snoRNA chromosome:GRCh37:X:15734331:15734469:1 gene:ENSG00000200620 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	 15734331	 15734469	+	ENSG00000200620	ENST00000363750	NA	NA	NA	NA	NA	inter
LNCA_21_P0009196	1.9796469	A	0.96844715	A	2.01558657185775	0	lncRNA	ENST00000508851	NA	NA	NA	NA	XLOC_012515	NA	ENST00000508851	THC2707471	NA	"BROAD Institute lincRNA (XLOC_012515), lincRNA [TCONS_00025237]"	chr17:48359025-48358966	hs|17q21.33	Agilent_HUMAN_G3V2	ENST00000508851	ENST00000508851	chr17	 48358966	 48359025	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004524	0.91988117	A	1.660064	A	0.598663480017214	0	lncRNA	TCONS_00010773	NA	NA	NA	NA	XLOC_004517	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004517), lincRNA [TCONS_00010773]"	chr5:115296951-115297010	hs|5q23.1	Agilent_HUMAN_G3V2	TCONS_00010773	TCONS_00010773	chr5	115296951	115297010	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20799_PI429285431	3.9990258	P	4.087126	P	0.940760766260324	0	lncRNA	22430-1_{1..464}	lnc-HRH4-9:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HRH4-9:1	chr18	 22882630	 22883093	+	lnc-HRH4-9	lnc-HRH4-9:1	ENSG00000264434.1	CTD-2006O16.2	ZNF521	NA	chr18:22872630-22892920	inner
CUST_16150_PI429285431	3.0248246	A	3.167357	A	0.905927560713186	0	lncRNA	17855-1_{1..502}	lnc-ANKRD62-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD62-1:1	chr18	 12074792	 12075293	+	lnc-ANKRD62-1	lnc-ANKRD62-1:1	XLOC_012628	linc-CIDEA-3	NA	NA	NA	inter
LNCA_19_P00318029	5.750801	P	6.06756	P	0.802871495969858	0	lncRNA	ENST00000446184	NA	NA	NA	NA	XLOC_007600	NA	ENST00000446184	NA	NA	"BROAD Institute lincRNA (XLOC_007600), lincRNA [TCONS_00015770]"	chr9:137445684-137445743	hs|9q34.3	Agilent_HUMAN_G3V2	ENST00000446184	ENST00000446184	chr9	137445684	137445743	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10405_PI429285431	1.0566632	A	1.7366201	A	0.624183921444389	0	lncRNA	11932-1_{1..701}	lnc-CPA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CPA1-1:1	chr7	130034773	130035473	+	lnc-CPA1-1	lnc-CPA1-1:1	XLOC_006248	linc-MEST-2	CPA1	NA	chr7:130024773-130027949	inter
LNCA_21_P0012415	3.8995605	P	2.582438	A	2.49168639256816	0	lncRNA	CU692619	NA	CU692619	NA	NA	XLOC_l2_010013	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010013), lincRNA [TCONS_l2_00019022]"	chr5:132342478-132342535	hs|5q31.1	Agilent_HUMAN_G3V2	CU692619	CU692619	chr5	132342478	132342535	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7268_PI429285431	1.1252753	A	1.3583678	A	0.85080917717935	0	lncRNA	8068-1_{1..302}	"transcript_id ""ENST00000410481.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410481.1"" | genecode_v17"	chr9	120039264	120039565	+	ENSG00000222413.1	ENST00000410481.1	RN7SKP125	RN7SKP125-201	ASTN2	NA	chr9:120029264-120049565	inner
CUST_46336_PI429285431	10.202494	P	9.319175	P	1.844614060638	0	lncRNA	50562-1_{1..1964}	"gi|402794820|ref|NR_073137.1| Homo sapiens MYC associated factor X (MAX), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402794820|ref|NR_073137.1| Homo sapiens MYC associated factor X (MAX), transcript variant 9, non-coding RNA"	Chr14	 65541842	 65543805	-	4149	NR_073137.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004050	1.8147035	A	0.9094661	A	1.87285265330017	0	lncRNA	ENST00000509669	NA	NA	NA	NA	XLOC_004524	NA	ENST00000509669	THC2686824	NA	"BROAD Institute lincRNA (XLOC_004524), lincRNA [TCONS_00010073]"	chr5:117542568-117542627	hs|5q23.1	Agilent_HUMAN_G3V2	ENST00000509669	ENST00000509669	chr5	117542568	117542627	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003356	0.8968487	A	0.9075469	A	0.992611999278161	0	lncRNA	ENST00000510602	NA	NA	NA	NA	XLOC_003521	NA	ENST00000510602	NA	NA	"BROAD Institute lincRNA (XLOC_003521), lincRNA [TCONS_00007520]"	chr4:41759249-41759308	hs|4p13	Agilent_HUMAN_G3V2	ENST00000510602	ENST00000510602	chr4	 41759249	 41759308	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46868_PI429285431	7.3905115	P	7.7889147	P	0.758697558379903	0	lncRNA	50998-1_{1..486}	"gi|283046790|ref|NR_033204.1| Homo sapiens HOXB cluster antisense RNA 3 (HOXB-AS3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|283046790|ref|NR_033204.1| Homo sapiens HOXB cluster antisense RNA 3 (HOXB-AS3), transcript variant 4, non-coding RNA"	Chr17	 46669682	 46670167	+	404266	NR_033204.1	NA	NA	NA	"hg19_refFlat_HOXB5:range=chr17:46669571-466710445'pad=0,hg19_refFlat_HOXB5:range=chr17:46669571-466710445'pad=0 3'pad=0 strand=- repeatMasking=none,-96.00"	NA	inter
CUST_51185_PI429285431	6.820876	P	6.7830596	P	1.02655889565098	0	lncRNA	54805-1_{1..767}	hg19_lincRNAsTranscripts_TCONS_l2_00007925 range=chr14:103550492-103556344 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007925 range=chr14:103550492-103556344 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	103550492	103551258	+	NA	NA	NA	NA	EXOC3L4	NA	chr14:103540492-103566344	inter
CUST_10105_PI429285431	0.88918185	A	0.88446736	A	1.00327318064637	0	lncRNA	11629-1_{1..2337}	lnc-NR2F2-8:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NR2F2-8:8	chr15	 96049283	 96051619	+	lnc-NR2F2-8	lnc-NR2F2-8:8	XLOC_011368	linc-NR2F2-3	NA	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.81;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60"	NA	inter
CUST_8086_PI429285431	3.9933996	P	4.685735	P	0.618851257185314	0	lncRNA	9692-1_{1..679}	lnc-RASA1-7:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RASA1-7:14	chr5	 88761733	 88762411	+	lnc-RASA1-7	lnc-RASA1-7:14	ENSG00000248309	CTC-454M9.1	NA	NA	NA	inter
CUST_31742_PI429285431	4.534566	P	4.2494073	P	1.21854429917049	0	lncRNA	33483-1_{1..1081}	n338279|BC033570|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|672|NULL|6.3383700|-0.1387293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338279|BC033570|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|672|NULL|6.3383700|-0.1387293	chr19	  4523903	  4524983	-	NA	NA	NA	NA	PLIN4	NA	chr19:4513903-4517716	inner
CUST_21890_PI429285431	6.932184	P	4.446956	P	5.5992282808212	0	lncRNA	23499-1_{1..1588}	lnc-WWP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-WWP2-2:1	chr16	 69736968	 69738555	+	lnc-WWP2-2	lnc-WWP2-2:1	ENSG00000260772.1	RP11-311C24.1	NFAT5	NA	chr16:69726968-69738553	inner
CUST_22413_PI429285431	2.8524613	A	3.2126586	P	0.77905803000458	0	lncRNA	24002-1_{1..507}	lnc-LYZL1-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LYZL1-3:8	chr10	 29771762	 29772268	+	lnc-LYZL1-3	lnc-LYZL1-3:8	ENSG00000224597.3	RP11-534G20.3	SVIL	NA	chr10:29761762-29782114	inner
CUST_37403_PI429285431	3.261248	P	5.226172	P	0.256152699318403	0	lncRNA	38509-1_{1..1710}	n345857|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1406|NULL|-1.4825300|-0.3266244	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n345857|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1406|NULL|-1.4825300|-0.3266244	chr3	151488233	151489942	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_52071_PI429285431	8.0664015	P	8.502985	P	0.738882313224113	0	lncRNA	55599-1_{1..631}	hg19_lincRNAsTranscripts_TCONS_l2_00017852 range=chr22:16186811-16193002 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017852 range=chr22:16186811-16193002 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 16186811	 16187441	-	NA	NA	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50"	NA	inter
CUST_25322_PI429285431	0.8884728	A	0.87846136	A	1.00696353484688	0	lncRNA	26854-1_{1..624}	lnc-BACH1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BACH1-2:3	chr21	 31135897	 31136520	+	lnc-BACH1-2	lnc-BACH1-2:3	ENSG00000174680.5	GRIK1-AS1	GRIK1	NA	chr21:31125897-31146321	inner
LNCA_21_P0009552	3.151329	P	3.3218544	P	0.888519041792879	0	lncRNA	TCONS_00026505	NA	NA	NA	NA	XLOC_012830	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012830), lincRNA [TCONS_00026505]"	chr18:41860838-41860779	hs|18q12.3	Agilent_HUMAN_G3V2	TCONS_00026505	TCONS_00026505	chr18	 41860779	 41860838	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00326822	6.4077387	P	6.397982	P	1.00678574866317	0	lncRNA	ENST00000485597	NA	NA	NA	NA	XLOC_001775	NA	ENST00000485597	NA	GO:0070534|GO:0005737|GO:0004842|GO:0070979|GO:0016881|GO:0000166|GO:0016874|GO:0005730|GO:0005634|GO:0070936|GO:0005524|GO:0040008	"BROAD Institute lincRNA (XLOC_001775), lincRNA [TCONS_00004960]"	chr2:181940989-181941048	hs|2q31.3	Agilent_HUMAN_G3V2	ENST00000485597	ENST00000485597	chr2	181940989	181941048	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009593	4.1936183	P	4.6463985	P	0.73063349554679	0	lncRNA	TCONS_00026583	NA	NA	NA	NA	XLOC_012899	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012899), lincRNA [TCONS_00026583]"	chr18:76556541-76556482	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026583	TCONS_00026583	chr18	 76556482	 76556541	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002654	5.8021293	P	6.4419293	P	0.641801915252231	0	lncRNA	TCONS_00005118	NA	NA	NA	NA	XLOC_002032	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002032), lincRNA [TCONS_00005118]"	chr2:28646291-28646232	hs|2p23.2	Agilent_HUMAN_G3V2	TCONS_00005118	TCONS_00005118	chr2	 28646232	 28646291	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005492	2.7099402	A	0.876616	A	3.56357231242502	0	lncRNA	THC2525265	NA	NA	NA	NA	XLOC_006416	NA	NA	THC2525265	NA	"BROAD Institute lincRNA (XLOC_006416), lincRNA [TCONS_00013783]"	chr7:039807062-039807003	hs|7p14.1	Agilent_HUMAN_G3V2	THC2525265	THC2525265	chr7	 39807003	 39807062	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52048_PI429285431	0.89940053	A	1.2138274	A	0.804170394795447	0	lncRNA	55581-1_{1..755}	hg19_lincRNAsTranscripts_TCONS_l2_00017234 range=chr21:40266745-40277363 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017234 range=chr21:40266745-40277363 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 40266745	 40267499	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3383059	9.381079	P	9.494849	P	0.924169895427308	0	lncRNA	XR_132662	XR_132662	XR_132662	   339352	NA	LOC339352	cytosolic thiouridylase subunit 1 homolog (S. pombe) pseudogene	NA	THC2652440	GO:0005524|GO:0008033	"PREDICTED: Homo sapiens putative ATP-binding domain-containing protein 3-like protein-like (LOC339352), miscRNA [XR_132662]"	chr19:52104986-52105045	hs|19q13.41	Agilent_HUMAN_G3V2	XR_132662	XR_132662	chr19	 52104986	 52105045	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00321183	3.8151627	P	2.754642	A	2.08568415460102	0	lncRNA	XR_110490	XR_110490	XR_110490	NA	Hs.418285	LOC100506392	uncharacterized LOC100506392	NA	THC2491933	NA	"PREDICTED: Homo sapiens hypothetical LOC100506392 (LOC100506392), miscRNA [XR_110490]"	chr1:113511079-113511138	hs|1p13.2	Agilent_HUMAN_G3V2	XR_110490	XR_110490	chr1	113511079	113511138	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15074_PI429285431	6.5114	P	6.7315116	P	0.858499024483629	0	lncRNA	16738-1_{1..2372}	lnc-GTF2F2-2:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GTF2F2-2:18	chr13	 45955208	 45957579	+	lnc-GTF2F2-2	lnc-GTF2F2-2:18	XLOC_010376	linc-COG3-1	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10"	NA	inter
CUST_12496_PI429285431	1.041835	A	0.9029181	A	1.10107817358419	0	lncRNA	14108-1_{1..607}	lnc-IKZF2-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IKZF2-3:3	chr2	214148757	214149363	-	lnc-IKZF2-3	lnc-IKZF2-3:3	XLOC_002478	linc-IKZF2-1	SPAG16	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.70chr2:214149116-214158921"	NA	inner
CUST_51875_PI429285431	2.5146675	A	2.4063919	A	1.07793904554138	0	lncRNA	55425-1_{1..2887}	hg19_lincRNAsTranscripts_TCONS_l2_00012667 range=chr19:53088914-53096000 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012667 range=chr19:53088914-53096000 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 53088914	 53091800	+	NA	NA	NA	NA	ZNF701	NA	chr19:53078914-53090427	inner
CUST_15992_PI429285431	0.92078567	A	0.9304096	A	0.993351400448325	0	lncRNA	17689-1_{1..915}	lnc-TRIM38-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TRIM38-1:4	chr6	 25999311	 26000225	+	lnc-TRIM38-1	lnc-TRIM38-1:4	XLOC_005208	linc-HIST1H3A	NA	NA	NA	inter
LNCA_21_P0012733	0.89262265	A	0.90154654	A	0.993833522056298	0	lncRNA	ENST00000512077	NA	NA	NA	NA	XLOC_l2_010751	NA	ENST00000512077	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010751), lincRNA [TCONS_l2_00021642]"	chr4:90581370-90581429	hs|4q22.1	Agilent_HUMAN_G3V2	ENST00000512077	ENST00000512077	chr4	 90581370	 90581429	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013558	10.581385	P	10.608803	P	0.981174741490941	0	lncRNA	TCONS_l2_00028644	NA	NA	NA	NA	XLOC_l2_014720	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014720), lincRNA [TCONS_l2_00028644]"	chr9:21697121-21699562	hs|9p21.3	Agilent_HUMAN_G3V2	TCONS_l2_00028644	TCONS_l2_00028644	chr9	 21697121	 21699562	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20371_PI429285431	0.91903067	A	0.9300201	A	0.992411645628305	0	lncRNA	22012-1_{1..763}	lnc-SOX11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SOX11-1:1	chr2	  5847240	  5848002	+	lnc-SOX11-1	lnc-SOX11-1:1	ENSG00000242540.1	AC010729.1	SOX11	NA	chr2:5837240-5841517	inter
CUST_33172_PI429285431	0.9029385	A	1.0163271	A	0.92441424713293	0	lncRNA	34765-1_{1..2005}	n339862|AK055997|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2310|NULL|1.0751200|-0.3138712	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n339862|AK055997|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2310|NULL|1.0751200|-0.3138712	chr18	 43913930	 43915934	+	NA	NA	NA	NA	RNF165	NA	chr18:43914187-43927609	inner
CUST_269_PI429285431	0.90015215	A	0.9065442	A	0.995579169332088	0	lncRNA	261-1_{1..2804}	"transcript_id ""ENST00000447748.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447748.1"" | genecode_v17"	chr1	 65437908	 65440711	-	ENSG00000226891.2	ENST00000447748.1	RP11-182I10.3	RP11-182I10.3-001	JAK1	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10chr1:65427908-65432187"	NA	inter
CUST_23119_PI429285431	1.1130543	A	1.4116961	A	0.813017437221548	0	lncRNA	24690-1_{1..709}	lnc-INTS8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-INTS8-1:1	chr8	 95963278	 95963986	+	lnc-INTS8-1	lnc-INTS8-1:1	ENSG00000253878.1	RP11-347C18.3	TP53INP1	NA	chr8:95953278-95961615	inter
LNCA_21_P0012391	3.5941558	P	3.9822106	P	0.764159233651261	0	lncRNA	ENST00000468859	XR_108477	XR_108477	NA	Hs.506711	XLOC_l2_009883	NA	ENST00000468859	THC2566400	NA	"PREDICTED: Homo sapiens hypothetical LOC100131679 (LOC100131679), miscRNA [XR_108477]"	chr3:125604930-125604871	hs|3q21.2	Agilent_HUMAN_G3V2	ENST00000468859	ENST00000468859	chr3	125604871	125604930	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7917_PI429285431	9.8868885	P	9.807611	P	1.05648881968263	0	lncRNA	9530-1_{1..555}	lnc-PCYOX1L-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCYOX1L-2:1	chr5	148803653	148804207	+	lnc-PCYOX1L-2	lnc-PCYOX1L-2:1	ENSG00000249669	XLOC_004598	NA	NA	NA	inter
CUST_10611_PI429285431	1.8273585	A	2.05612	A	0.853367161358256	0	lncRNA	12141-1_{1..561}	lnc-ZFP36L1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFP36L1-1:1	chr14	 69284569	 69285129	-	lnc-ZFP36L1-1	lnc-ZFP36L1-1:1	XLOC_011059	linc-C14orf181	NA	NA	NA	inter
CUST_22294_PI429285431	0.900215	A	0.90429795	A	0.99717391563528	0	lncRNA	23894-1_{1..544}	lnc-ARHGAP31-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARHGAP31-1:1	chr3	119009488	119010031	+	lnc-ARHGAP31-1	lnc-ARHGAP31-1:1	ENSG00000240254.1	B4GALT4-AS1	ARHGAP31	NA	chr3:119013220-119019513	inter
CUST_44513_PI429285431	0.9057518	A	0.91214657	A	0.995577292308385	0	lncRNA	49111-2_{3001..3278}	"gi|397139086|ref|XR_158785.1| PREDICTED: Homo sapiens integral membrane glycoprotein-like (LOC646652), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139086|ref|XR_158785.1| PREDICTED: Homo sapiens integral membrane glycoprotein-like (LOC646652), misc_RNA"	NA	NA	NA	NA	NA	XR_158785.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004217	0.88218933	A	0.87636185	A	1.00404747030467	0	lncRNA	TCONS_00010610	NA	NA	NA	NA	XLOC_004270	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004270), lincRNA [TCONS_00010610]"	chr5:5694532-5694591	hs|5p15.32	Agilent_HUMAN_G3V2	TCONS_00010610	TCONS_00010610	chr5	  5694532	  5694591	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26022_PI429285431	2.4718697	A	1.5997502	A	1.8303499398541	0	lncRNA	27541-1_{1..325}	lnc-CLSTN3-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLSTN3-1:6	chr12	  7274841	  7275165	+	lnc-CLSTN3-1	lnc-CLSTN3-1:6	ENSG00000205885.3	ABC12-49244600F4.3	CLSTN3	NA	chr12:7282967-7285097	inter
CUST_8848_PI429285431	1.3518203	A	0.8769533	A	1.38979009116835	0	lncRNA	10387-1_{1..620}	lnc-ZNF572-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZNF572-1:1	chr8	125861987	125862606	+	lnc-ZNF572-1	lnc-ZNF572-1:1	ENSG00000249816	ENSG00000249816.2	NA	NA	NA	inter
LNCA_21_P0010574	2.8572564	A	3.2443109	P	0.764689251095933	0	lncRNA	TCONS_l2_00000794	NA	NA	NA	NA	XLOC_l2_000604	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000604), lincRNA [TCONS_l2_00000794]"	chr1:209553103-209553162	hs|1q32.2	Agilent_HUMAN_G3V2	TCONS_l2_00000794	TCONS_l2_00000794	chr1	209553103	209553162	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10851_PI429285431	3.7772489	P	4.059023	P	0.822578859629332	0	lncRNA	12389-1_{1..813}	lnc-MAPK8IP2-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAPK8IP2-1:10	chr22	 51035403	 51036215	+	lnc-MAPK8IP2-1	lnc-MAPK8IP2-1:10	XLOC_014288	linc-MAPK8IP2	MAPK8IP2	NA	chr22:51039131-51045736	inter
CUST_18404_PI429285431	4.8596387	P	4.8643875	P	0.996713794102199	0	lncRNA	20129-1_{1..900}	lnc-LRIG2-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LRIG2-4:4	chr1	113510657	113511556	+	lnc-LRIG2-4	lnc-LRIG2-4:4	ENSG00000226419	RP11-31F15.1	NA	NA	NA	inter
CUST_47082_PI429285431	3.4340456	P	2.799049	A	1.55293409019735	0	lncRNA	51167-1_{1..1593}	"gi|371873743|ref|NR_045830.1| Homo sapiens zinc finger protein 85 (ZNF85), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|371873743|ref|NR_045830.1| Homo sapiens zinc finger protein 85 (ZNF85), transcript variant 5, non-coding RNA"	NW_003315962.1	   266529	   268121	+	7639	NR_045830.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005069	3.6404636	P	3.8528666	P	0.863098428437923	0	lncRNA	TCONS_00012332	NA	NA	NA	NA	XLOC_005877	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005877), lincRNA [TCONS_00012332]"	chr6:150643468-150643409	hs|6q25.1	Agilent_HUMAN_G3V2	TCONS_00012332	TCONS_00012332	chr6	150643409	150643468	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013782	0.88510454	A	2.3176684	A	0.370471929654785	0	lncRNA	TCONS_l2_00030301	NA	NA	NA	NA	XLOC_l2_015585	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015585), lincRNA [TCONS_l2_00030301]"	chrX:102094877-102098292	hs|Xq22.1	Agilent_HUMAN_G3V2	TCONS_l2_00030301	TCONS_l2_00030301	chrX	102094877	102098292	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011532	5.2307844	P	5.6455393	P	0.750146926559749	0	lncRNA	TCONS_l2_00010631	NA	NA	NA	NA	XLOC_l2_005714	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005714), lincRNA [TCONS_l2_00010631]"	chr17:21905090-21905149	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00010631	TCONS_l2_00010631	chr17	 21905090	 21905149	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41439_PI429285431	0.9009961	A	0.90477675	A	0.997382883747445	0	lncRNA	42610-1_{1..87}	ENST00000385203 ncrna:miRNA chromosome:GRCh37:10:18134036:18134122:1 gene:ENSG00000207938 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385203 ncrna:miRNA chromosome:GRCh37:10:18134036:18134122:1 gene:ENSG00000207938 gene_biotype:miRNA transcript_biotype:miRNA	chr10	 18134036	 18134122	+	ENSG00000207938	ENST00000385203	NA	NA	MRC1	NA	chr10:18124036-18144122	inner
CUST_38283_PI429285431	0.8983544	A	0.8916051	A	1.00468921840074	0	lncRNA	39338-1_{1..3000}	n381906|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tcf.2||3.7443400|-0.3737606	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381906|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001tcf.2||3.7443400|-0.3737606	chr12	 92817734	 92820733	+	NA	NA	NA	NA	CLLU1	NA	chr12:92815307-92824778	inter
LNCA_21_P0005180	0.8816215	A	0.8776717	A	1.00274154391084	0	lncRNA	TCONS_00012819	NA	NA	NA	NA	XLOC_005902	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005902), lincRNA [TCONS_00012819]"	chr6:160536160-160536101	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_00012819	TCONS_00012819	chr6	160536101	160536160	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18521_PI429285431	1.1190195	A	0.8919251	A	1.17047522678431	0	lncRNA	20235-1_{1..468}	lnc-CCNJ-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CCNJ-1:8	chr10	 97892343	 97892810	+	lnc-CCNJ-1	lnc-CCNJ-1:8	ENSG00000177853	ZNF518A	ZNF518A	NA	chr10:97889472-97902666	inner
CUST_37749_PI429285431	0.90655625	A	1.0526774	A	0.903676837500283	0	lncRNA	38843-1_{1..329}	n346253|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1803|NULL|-1.3312100|-0.2890955	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346253|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1803|NULL|-1.3312100|-0.2890955	chr18	 61552433	 61552761	-	NA	NA	NA	NA	SERPINB2	NA	chr18:61554939-61563237	inter
CUST_28118_PI429285431	2.3394058	A	2.0939445	A	1.18547176351431	0	lncRNA	29741-1_{1..443}	n325392|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323867|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323867|-1.1069500|-0.1823866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325392|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323867|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323867|-1.1069500|-0.1823866	chr2	 19774956	 19775398	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013053	2.0279849	A	3.2777026	P	0.420530487068467	0	lncRNA	TCONS_l2_00024560	NA	NA	NA	NA	XLOC_l2_012844	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012844), lincRNA [TCONS_l2_00024560]"	chr6:1489710-1489651	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_l2_00024560	TCONS_l2_00024560	chr6	  1489651	  1489710	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39159_PI429285431	1.0640689	A	0.9089655	A	1.1135014215952	0	lncRNA	40136-1_{1..1662}	n385823|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ewj.1||-0.2637200|-0.3404337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385823|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ewj.1||-0.2637200|-0.3404337	chrX	130845678	130847339	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20"	NA	inter
LNCA_21_P0002613	2.1521413	A	0.97596765	A	2.25976640957321	0	lncRNA	TCONS_00004903	NA	NA	NA	NA	XLOC_001690	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001690), lincRNA [TCONS_00004903]"	chr2:140020978-140021037	hs|2q22.1	Agilent_HUMAN_G3V2	TCONS_00004903	TCONS_00004903	chr2	140020978	140021037	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45031_PI429285431	4.34218	P	4.8661776	P	0.695442142759057	0	lncRNA	49529-1_{1..973}	"gi|300796987|ref|NR_034141.1| Homo sapiens LHFPL3 antisense RNA 1 (LHFPL3-AS1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300796987|ref|NR_034141.1| Homo sapiens LHFPL3 antisense RNA 1 (LHFPL3-AS1), transcript variant 2, non-coding RNA"	Chr7	104436953	104437925	-	645591	NR_034141.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008752	4.454807	P	4.0805907	P	1.29613527749319	0	lncRNA	TCONS_00023717	NA	NA	NA	NA	XLOC_011515	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011515), lincRNA [TCONS_00023717]"	chr15:68778967-68778908	hs|15q23	Agilent_HUMAN_G3V2	TCONS_00023717	TCONS_00023717	chr15	 68778908	 68778967	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014713	0.8983704	A	0.9095755	A	0.992263300055399	0	lncRNA	XR_112502	XR_112502	XR_112502	NA	NA	LOC100129060	uncharacterized LOC100129060	NA	THC2553825	NA	"PREDICTED: Homo sapiens hypothetical LOC100129060 (LOC100129060), miscRNA [XR_112502]"	chr3:50153141-50153082	hs|3p21.31	Agilent_HUMAN_G3V2	XR_112502	XR_112502	chr3	 50153082	 50153141	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001296	0.89572287	A	0.90581065	A	0.993032073099109	0	lncRNA	THC2698970	NA	NA	NA	NA	XLOC_000190	NA	NA	THC2698970	NA	"BROAD Institute lincRNA (XLOC_000190), lincRNA [TCONS_00000938]"	chr1:051475906-051475965	hs|1p32.3	Agilent_HUMAN_G3V2	THC2698970	THC2698970	chr1	 51475906	 51475965	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38628_PI429285431	4.8595395	P	5.7355967	P	0.544854453278845	0	lncRNA	39631-2_{3001..3969}	n383807|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vgn.1||-0.9398340|-0.2605655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383807|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002vgn.1||-0.9398340|-0.2605655	chr2	218151747	218152715	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16256_PI429285431	1.3350126	A	1.0042634	A	1.2576663184671	0	lncRNA	17960-1_{1..1050}	lnc-TMEM64-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM64-1:2	chr8	 91631177	 91632226	-	lnc-TMEM64-1	lnc-TMEM64-1:2	XLOC_007150	linc-CALB1-3	TMEM64	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0,hg19_refFlat_C6orf7:range=chr6:80513592-805800385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00chr8:91634223-91641400"	NA	inter
CUST_3982_PI429285431	6.8834124	P	7.2650046	P	0.767589988484873	0	lncRNA	3944-2_{3001..6000}	"transcript_id ""ENST00000534336.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000534336.1"" | genecode_v17"	chr11	 65268233	 65271232	+	ENSG00000251562.3	ENST00000534336.1	MALAT1	MALAT1-001	NA	NA	NA	inter
CUST_12932_PI429285431	9.023538	P	8.927551	P	1.06879636033623	0	lncRNA	14560-1_{1..493}	lnc-GLB1L2-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLB1L2-3:3	chr11	134585601	134586093	+	lnc-GLB1L2-3	lnc-GLB1L2-3:3	XLOC_009345	TCONS_00019551	NA	NA	NA	inter
CUST_21967_PI429285431	1.0461969	A	1.929774	A	0.542021844053801	0	lncRNA	23575-1_{1..547}	lnc-DDI1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DDI1-1:1	chr11	103817178	103817724	+	lnc-DDI1-1	lnc-DDI1-1:1	ENSG00000255548.1	RP11-617B3.2	PDGFD	NA	chr11:103807178-103827274	inner
LNCA_21_P0011564	2.128121	A	0.882291	A	2.37154953076862	0	lncRNA	TCONS_l2_00011032	NA	NA	NA	NA	XLOC_l2_005936	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005936), lincRNA [TCONS_l2_00011032]"	chr17:41029-37028	hs|17p13.3	Agilent_HUMAN_G3V2	TCONS_l2_00011032	TCONS_l2_00011032	chr17	    37028	    41029	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21282_PI429285431	0.91534984	A	1.1351936	A	0.858658421804635	0	lncRNA	22907-1_{1..575}	lnc-NUDT16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-NUDT16-1:1	chr3	131239229	131239803	+	lnc-NUDT16-1	lnc-NUDT16-1:1	ENSG00000248468.1	RP11-517B11.4	NA	NA	NA	inter
CUST_4396_PI429285431	0.902253	A	0.898664	A	1.00249080213722	0	lncRNA	4346-2_{3001..3722}	"transcript_id ""ENST00000547179.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000547179.1"" | genecode_v17"	chr12	103206058	103206779	-	ENSG00000258169.1	ENST00000547179.1	LINC00485	LINC00485-001	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60"	NA	inter
CUST_4132_PI429285431	1.6072946	A	1.4092758	A	1.14712197246675	0	lncRNA	4091-1_{1..496}	"transcript_id ""ENST00000541881.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000541881.1"" | genecode_v17"	chr12	   783967	   784462	-	ENSG00000256672.1	ENST00000541881.1	RP11-218M22.2	RP11-218M22.2-001	NA	NA	NA	inter
CUST_38581_PI429285431	1.1457767	A	1.5141035	A	0.774680430085365	0	lncRNA	39592-1_{1..3000}	n383601|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002rho.1||0.0889510|-0.1668313	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383601|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002rho.1||0.0889510|-0.1668313	chr2	 26928413	 26931412	+	NA	NA	NA	NA	KCNK3	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-56.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30chr2:26918413-26941548"	NA	inner
LNCA_21_P0003672	1.1487556	A	0.9110405	A	1.17912371870881	0	lncRNA	TCONS_00008312	NA	NA	NA	NA	XLOC_003765	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003765), lincRNA [TCONS_00008312]"	chr4:164041728-164041787	hs|4q32.2	Agilent_HUMAN_G3V2	TCONS_00008312	TCONS_00008312	chr4	164041728	164041787	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51811_PI429285431	1.7496018	A	0.9007916	A	1.80101500377333	0	lncRNA	55365-1_{1..833}	hg19_lincRNAsTranscripts_TCONS_l2_00012964 range=chr19:23687934-23695476 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012964 range=chr19:23687934-23695476 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 23687934	 23688766	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16180_PI429285431	2.476282	A	2.9015741	A	0.744687940601682	0	lncRNA	17885-1_{1..586}	lnc-HMGCLL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HMGCLL1-1:1	chr6	 54705439	 54706024	-	lnc-HMGCLL1-1	lnc-HMGCLL1-1:1	XLOC_005749	linc-KLHL31-2	FAM83B	NA	chr6:54711569-54715653	inter
CUST_34108_PI429285431	2.2972949	A	2.2311568	A	1.04691049124624	0	lncRNA	35631-1_{1..1095}	n340936|AJ628247|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3401|NULL|0.9273560|-0.1220381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340936|AJ628247|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3401|NULL|0.9273560|-0.1220381	chr11	  1651032	  1652126	+	NA	NA	NA	NA	KRTAP5-5	NA	chr11:1651033-1652160	inner
LNCA_21_P0001329	1.1359661	A	0.87454647	A	1.19865761860895	0	lncRNA	TCONS_00001011	NA	NA	NA	NA	XLOC_000276	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000276), lincRNA [TCONS_00001011]"	chr1:85710786-85710845	hs|1p22.3	Agilent_HUMAN_G3V2	TCONS_00001011	TCONS_00001011	chr1	 85710786	 85710845	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_610_PI429285431	3.5647252	P	4.2934055	P	0.603455670310564	0	lncRNA	602-1_{1..426}	"transcript_id ""ENST00000451766.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451766.1"" | genecode_v17"	chr1	235095413	235095838	-	ENSG00000238005.1	ENST00000451766.1	RP11-443B7.1	RP11-443B7.1-005	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10"	NA	inter
CUST_13889_PI429285431	7.324178	P	8.166237	P	0.557846847167799	0	lncRNA	15533-1_{1..283}	lnc-OPN5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OPN5-1:1	chr6	 47838069	 47838351	+	lnc-OPN5-1	lnc-OPN5-1:1	XLOC_005311	linc-CENPQ-2	C6orf138	NA	chr6:47845764-47848098	inter
CUST_21547_PI429285431	5.334381	P	5.568079	P	0.850452166965977	0	lncRNA	23164-1_{1..917}	lnc-ERICH1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ERICH1-7:1	chr8	  1712600	  1713516	-	lnc-ERICH1-7	lnc-ERICH1-7:1	ENSG00000253982.1	CTD-2336O2.1	CLN8	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10chr8:1711870-1722668"	NA	inner
CUST_41802_PI429285431	9.228464	P	9.589749	P	0.77847089132334	0	lncRNA	43388-1_{1..80}	ENST00000583954 ncrna:miRNA chromosome:GRCh37:2:240882432:240882511:-1 gene:ENSG00000264279 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583954 ncrna:miRNA chromosome:GRCh37:2:240882432:240882511:-1 gene:ENSG00000264279 gene_biotype:miRNA transcript_biotype:miRNA	chr2	240882432	240882511	-	ENSG00000264279	ENST00000583954	NA	NA	NA	NA	NA	inter
CUST_13783_PI429285431	1.077503	A	1.0635629	A	1.00970937408174	0	lncRNA	15425-1_{1..243}	lnc-ATP10A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP10A-2:1	chr15	 26379590	 26379832	-	lnc-ATP10A-2	lnc-ATP10A-2:1	XLOC_011406	linc-ATP10A-3	NA	NA	NA	inter
CUST_49589_PI429285431	1.3277547	A	0.89602894	A	1.34884610958848	0	lncRNA	53379-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00024964 range=chr6:147162104-147178269 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024964 range=chr6:147162104-147178269 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	147162104	147165103	-	NA	NA	NA	NA	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-24.51;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.90;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
LNCA_19_P00807614	6.555348	P	6.7857714	P	0.852384698459995	0	lncRNA	TCONS_00026336	NA	NA	NA	NA	XLOC_012683	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012683), lincRNA [TCONS_00026336]"	chr18:53506018-53506077	hs|18q21.2	Agilent_HUMAN_G3V2	TCONS_00026336	TCONS_00026336	chr18	 53506018	 53506077	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008052	3.3374283	P	5.0943274	P	0.295883448374019	0	lncRNA	TCONS_00021759	NA	NA	NA	NA	XLOC_010353	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010353), lincRNA [TCONS_00021759]"	chr13:39665805-39665864	hs|13q13.3	Agilent_HUMAN_G3V2	TCONS_00021759	TCONS_00021759	chr13	 39665805	 39665864	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16979_PI429285431	2.1037357	A	1.5264199	A	1.49207059905373	0	lncRNA	18687-4_{9001..9659}	lnc-KIAA0226-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA0226-3:1	chr3	197379878	197380536	-	lnc-KIAA0226-3	lnc-KIAA0226-3:1	XLOC_003405	linc-BDH1-3	NA	NA	NA	inter
LNCA_21_P0008300	0.9214449	A	0.96836346	A	0.968001668955046	0	lncRNA	TCONS_00022430	NA	NA	NA	NA	XLOC_010769	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010769), lincRNA [TCONS_00022430]"	chr14:24167038-24167097	hs|14q11.2	Agilent_HUMAN_G3V2	TCONS_00022430	TCONS_00022430	chr14	 24167038	 24167097	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21064_PI429285431	2.5637941	A	2.6134858	A	0.96614276894395	0	lncRNA	22691-1_{1..694}	lnc-GDAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GDAP1-1:1	chr8	 75119956	 75120649	+	lnc-GDAP1-1	lnc-GDAP1-1:1	ENSG00000253983.1	RP1-16A9.1	NA	NA	NA	inter
CUST_10088_PI429285431	1.8521991	A	2.080434	A	0.853678706875068	0	lncRNA	11615-1_{1..1049}	lnc-FRG2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FRG2-5:1	chr4	190200606	190201654	-	lnc-FRG2-5	lnc-FRG2-5:1	XLOC_004229	linc-TRIML2-5	NA	NA	NA	inter
CUST_32384_PI429285431	2.7204382	A	1.9029874	A	1.76228932609542	0	lncRNA	34061-1_{1..524}	n338975|AF085983|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1403|NULL|-1.3254100|-0.3429003	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338975|AF085983|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1403|NULL|-1.3254100|-0.3429003	chr2	145143041	145143564	-	NA	NA	NA	NA	ZEB2	NA	chr2:145141942-145153557	inner
CUST_8425_PI429285431	0.91039866	A	0.9179937	A	0.994749352530227	0	lncRNA	9996-2_{3001..5630}	lnc-TSPYL6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSPYL6-1:1	chr2	 54355856	 54358485	-	lnc-TSPYL6-1	lnc-TSPYL6-1:1	ENSG00000249397	ENST00000512963	ACYP2	"hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr2:54342856-54363753"	NA	inner
CUST_48036_PI429285431	2.821521	A	3.9632812	P	0.453206293325155	0	lncRNA	51917-1_{1..2828}	"gi|226061086|ref|NR_027434.1| Homo sapiens uncharacterized LOC100131532 (LOC100131532), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|226061086|ref|NR_027434.1| Homo sapiens uncharacterized LOC100131532 (LOC100131532), non-coding RNA"	NA	NA	NA	NA	NA	NR_027434.1	NA	NA	NA	NA	NA	Unknown
CUST_25455_PI429285431	1.3405266	A	1.1057191	A	1.17674971204956	0	lncRNA	26985-1_{1..422}	lnc-EIF6-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EIF6-1:11	chr20	 33859808	 33860229	-	lnc-EIF6-1	lnc-EIF6-1:11	ENSG00000126005.10	MT1P3	MMP24	NA	chr20:33849808-33864804	inner
CUST_19259_PI429285431	0.9007056	A	0.91269726	A	0.991722463718034	0	lncRNA	20928-1_{1..650}	lnc-ZSCAN10-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZSCAN10-2:3	chr16	  3162284	  3162933	-	lnc-ZSCAN10-2	lnc-ZSCAN10-2:3	ENSG00000263214.1	RP11-473M20.15	ZNF205	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90chr16:3162563-3170518"	NA	inter
LNCA_21_P0001965	0.89748764	A	0.90819144	A	0.99260814633887	0	lncRNA	TCONS_00003100	NA	NA	NA	NA	XLOC_001848	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001848), lincRNA [TCONS_00003100]"	chr2:216407709-216410131	hs|2q35	Agilent_HUMAN_G3V2	TCONS_00003100	TCONS_00003100	chr2	216407709	216410131	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22352_PI429285431	4.888161	P	4.3962197	P	1.40633597811709	0	lncRNA	23946-1_{1..1110}	lnc-MANSC4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MANSC4-3:1	chr12	 27863532	 27864641	-	lnc-MANSC4-3	lnc-MANSC4-3:1	ENSG00000256377.1	RP11-1060J15.4	MRPS35	"hg19_refFlat_REP15:range=chr12:27849496-278502065'pad=0,hg19_refFlat_REP15:range=chr12:27849496-278502065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30chr12:27855271-27873703"	NA	inter
CUST_42876_PI429285431	0.89481163	A	0.89287	A	1.00134674140301	0	lncRNA	45948-1_{1..124}	ENST00000515926 ncrna:snoRNA chromosome:GRCh37:14:47429626:47429749:1 gene:ENSG00000251735 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000515926 ncrna:snoRNA chromosome:GRCh37:14:47429626:47429749:1 gene:ENSG00000251735 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 47429626	 47429749	+	ENSG00000251735	ENST00000515926	NA	NA	MDGA2	NA	chr14:47419626-47439749	inner
LNCA_21_P0008226	1.7633532	A	1.6650237	A	1.07053317171556	0	lncRNA	TCONS_00022130	NA	NA	NA	NA	XLOC_010740	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010740), lincRNA [TCONS_00022130]"	chr13:114459324-114459265	hs|13q34	Agilent_HUMAN_G3V2	TCONS_00022130	TCONS_00022130	chr13	114459265	114459324	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33218_PI429285431	1.0872576	A	0.8868219	A	1.14904531914498	0	lncRNA	34807-1_{1..611}	n339914|AF147397|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2363|NULL|-1.3241300|-0.3518470	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339914|AF147397|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2363|NULL|-1.3241300|-0.3518470	chr4	 37995585	 37996195	+	NA	NA	NA	NA	TBC1D1	NA	chr4:37985585-38006155	inner
LNCA_19_P00320622	2.3823783	A	2.83525	A	0.730587158072143	0	lncRNA	THC2519238	NA	NA	NA	NA	XLOC_014192	NA	NA	THC2519238	NA	"BROAD Institute lincRNA (XLOC_014192), lincRNA [TCONS_00029388]"	chr22:027170120-027170179	hs|22q12.1	Agilent_HUMAN_G3V2	THC2519238	THC2519238	chr22	 27170120	 27170179	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005480	0.884614	A	0.8859565	A	0.999069882737567	0	lncRNA	TCONS_00013741	NA	NA	NA	NA	XLOC_006385	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006385), lincRNA [TCONS_00013741]"	chr7:26109185-26109126	hs|7p15.2	Agilent_HUMAN_G3V2	TCONS_00013741	TCONS_00013741	chr7	 26109126	 26109185	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17082_PI429285431	5.5856137	P	5.9320097	P	0.786546519489642	0	lncRNA	18790-1_{1..597}	lnc-HS3ST4-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HS3ST4-1:4	chr16	 26345613	 26346209	+	lnc-HS3ST4-1	lnc-HS3ST4-1:4	XLOC_011679	linc-C16orf82	NA	NA	NA	inter
CUST_43868_PI429285431	0.9167795	A	1.4897487	A	0.67223184835592	0	lncRNA	48589-1_{1..3000}	"gi|363543317|ref|NR_045634.1| Homo sapiens BOLA3 antisense RNA 1 (head to head) (BOLA3-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|363543317|ref|NR_045634.1| Homo sapiens BOLA3 antisense RNA 1 (head to head) (BOLA3-AS1), transcript variant 1, non-coding RNA"	Chr2	 74375108	 74378107	+	100507171	NR_045634.1	NA	NA	NA	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80"	NA	inter
LNCA_21_P0006995	3.5876453	P	3.6388617	P	0.96512224852397	0	lncRNA	XR_110401	XR_110401	XR_110401	NA	Hs.562293	LOC100506769	uncharacterized LOC100506769	ENST00000442700	THC2644347	NA	"PREDICTED: Homo sapiens hypothetical LOC100506769 (LOC100506769), miscRNA [XR_110401]"	chr10:50504567-50504508	hs|10q11.23	Agilent_HUMAN_G3V2	XR_110401	XR_110401	chr10	 50504508	 50504567	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12292_PI429285431	0.89479244	A	0.89383215	A	1.00066584388171	0	lncRNA	13903-1_{1..588}	lnc-RPLP1-1:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RPLP1-1:15	chr15	 69857533	 69858120	+	lnc-RPLP1-1	lnc-RPLP1-1:15	XLOC_011294	linc-LRRC49-4	NA	NA	NA	inter
LNCA_21_P0005697	4.6287823	P	4.547375	P	1.05804962880793	0	lncRNA	TCONS_00014701	NA	NA	NA	NA	XLOC_006799	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006799), lincRNA [TCONS_00014701]"	chr8:55972202-55975381	hs|8q12.1	Agilent_HUMAN_G3V2	TCONS_00014701	TCONS_00014701	chr8	 55972202	 55975381	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46749_PI429285431	1.0834601	A	1.0127285	A	1.05024913674646	0	lncRNA	50899-1_{1..1551}	"gi|305410872|ref|NR_036581.1| Homo sapiens long intergenic non-protein coding RNA 675 (LINC00675), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|305410872|ref|NR_036581.1| Homo sapiens long intergenic non-protein coding RNA 675 (LINC00675), non-coding RNA"	Chr17	 10698230	 10699780	-	100289255	NR_036581.1	NA	NA	NA	NA	NA	inter
CUST_41633_PI429285431	0.8843279	A	2.2715302	A	0.38230545743587	0	lncRNA	43026-1_{1..84}	ENST00000580572 ncrna:miRNA chromosome:GRCh37:1:25349994:25350077:1 gene:ENSG00000264371 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580572 ncrna:miRNA chromosome:GRCh37:1:25349994:25350077:1 gene:ENSG00000264371 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 25349994	 25350077	+	ENSG00000264371	ENST00000580572	NA	NA	NA	NA	NA	inter
CUST_8478_PI429285431	0.90049464	A	0.88464785	A	1.01104470515495	0	lncRNA	10042-2_{3001..3121}	lnc-CPM-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CPM-3:1	chr12	 69054445	 69054565	-	lnc-CPM-3	lnc-CPM-3:1	ENSG00000245302	ENST00000501412	RAP1B	NA	chr12:69041445-69054374	inner
LNCA_21_P0003979	1.9686884	A	1.2010009	A	1.702538591234	0	lncRNA	AK309747	NA	AK309747	NA	Hs.709170	XLOC_004320	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004320), lincRNA [TCONS_00009372]"	chr5:25145150-25162110	hs|5p14.1	Agilent_HUMAN_G3V2	AK309747	AK309747	chr5	 25145150	 25162110	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013042	4.117031	P	4.481857	P	0.776562528703402	0	lncRNA	TCONS_l2_00024457	NA	NA	NA	NA	XLOC_l2_012748	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012748), lincRNA [TCONS_l2_00024457]"	chr6:143271494-143277580	hs|6q24.2	Agilent_HUMAN_G3V2	TCONS_l2_00024457	TCONS_l2_00024457	chr6	143271494	143277580	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32450_PI429285431	0.91520435	A	1.2673643	A	0.783410326299867	0	lncRNA	34122-1_{1..3000}	n339049|BC042638|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1478|NULL|-0.3442210|-0.3779596	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339049|BC042638|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1478|NULL|-0.3442210|-0.3779596	chr2	182752577	182755576	-	NA	NA	NA	NA	SSFA2	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-34.81;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20chr2:182756472-182766390"	NA	inter
CUST_21264_PI429285431	1.1115446	A	0.8890523	A	1.16674743851229	0	lncRNA	22889-1_{1..567}	lnc-CDC42BPB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDC42BPB-1:1	chr14	103240978	103241544	-	lnc-CDC42BPB-1	lnc-CDC42BPB-1:1	ENSG00000259508.1	RP11-661D19.3	TRAF3	NA	chr14:103243816-103251128	inter
CUST_29856_PI429285431	0.90239084	A	0.9101549	A	0.994632818763673	0	lncRNA	31619-1_{1..336}	n333762|L09101|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191962|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191962|2.2967200|-0.0238467	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333762|L09101|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000191962|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000191962|2.2967200|-0.0238467	chr2	 89161035	 89161370	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13562_PI429285431	1.4962193	A	2.62389	A	0.457654033216876	0	lncRNA	15203-1_{1..1957}	lnc-MGAT1-2:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MGAT1-2:7	chr5	180257708	180259664	-	lnc-MGAT1-2	lnc-MGAT1-2:7	XLOC_005110	linc-MGAT1-2	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10"	NA	inter
LNCA_21_P0014074	0.9251378	A	0.9704029	A	0.969111723078689	0	lncRNA	XR_108351	XR_108351	XR_108351	NA	Hs.656335	LOC100505516	uncharacterized LOC100505516	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505516 (LOC100505516), miscRNA [XR_108351]"	chr1:151425888-151425829	hs|1q21.3	Agilent_HUMAN_G3V2	XR_108351	XR_108351	chr1	151425829	151425888	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31603_PI429285431	2.2831683	A	1.2956977	A	1.98270576989035	0	lncRNA	33359-1_{1..2028}	n338113|AK124307|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|501|NULL|-1.3088100|-0.4387449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338113|AK124307|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|501|NULL|-1.3088100|-0.4387449	chr1	109941663	109943690	-	NA	NA	NA	NA	PSMA5	NA	chr1:109941653-109953691	inner
CUST_10931_PI429285431	7.3162146	P	7.203909	P	1.08095435178673	0	lncRNA	12472-1_{1..758}	lnc-RP11-204N11.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-204N11.1.1-3:1	chr14	 98444314	 98445071	-	lnc-RP11-204N11.1.1-3	lnc-RP11-204N11.1.1-3:1	XLOC_011117	linc-ATG2B-2	NA	NA	NA	inter
CUST_39081_PI429285431	6.1806808	P	5.5379915	P	1.56123671977264	0	lncRNA	40057-1_{1..1381}	n385605|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004amc.2||-0.8638710|-0.2698126	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n385605|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004amc.2||-0.8638710|-0.2698126	chr9	 84304627	 84306007	+	NA	NA	NA	NA	TLE1	NA	chr9:84294627-84303596	inter
CUST_9721_PI429285431	1.8910537	A	1.5649587	A	1.25361556703196	0	lncRNA	11237-1_{1..1236}	lnc-MPPED2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MPPED2-3:1	chr11	 30718533	 30719768	-	lnc-MPPED2-3	lnc-MPPED2-3:1	XLOC_009404	linc-MPPED2-2	NA	NA	NA	inter
CUST_25495_PI429285431	2.5206342	A	1.6111623	A	1.87835779776977	0	lncRNA	27025-1_{1..818}	lnc-PPP4R1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-PPP4R1-7:1	chr18	  8707068	  8707885	-	lnc-PPP4R1-7	lnc-PPP4R1-7:1	ENSG00000265962.1	RP11-674N23.1	CCDC165	NA	chr18:8717369-8717619	inter
CUST_16921_PI429285431	0.9133827	A	0.92625666	A	0.991116147621189	0	lncRNA	18632-1_{1..733}	lnc-RP11-408E5.4.1-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-408E5.4.1-6:3	chr13	 19500450	 19501182	+	lnc-RP11-408E5.4.1-6	lnc-RP11-408E5.4.1-6:3	XLOC_010286	linc-MPHOSPH8-6	NA	NA	NA	inter
CUST_46852_PI429285431	9.549485	P	9.364155	P	1.13707703686651	0	lncRNA	50984-2_{3001..5065}	"gi|239787874|ref|NR_027774.1| Homo sapiens pleckstrin homology domain containing, family M (with RUN domain) member 1 (PLEKHM1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239787874|ref|NR_027774.1| Homo sapiens pleckstrin homology domain containing, family M (with RUN domain) member 1 (PLEKHM1), transcript variant 2, non-coding RNA"	Chr17	 43516266	 43518330	-	9842	NR_027774.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004261	7.874409	P	7.4836216	P	1.31110879093548	0	lncRNA	TCONS_00009989	NA	NA	NA	NA	XLOC_004415	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004415), lincRNA [TCONS_00009989]"	chr5:67950966-67951025	hs|5q13.1	Agilent_HUMAN_G3V2	TCONS_00009989	TCONS_00009989	chr5	 67950966	 67951025	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35570_PI429285431	3.151189	A	3.3300872	P	0.883377382495507	0	lncRNA	36983-2_{3001..4825}	n342699|BX538325|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5201|NULL|0.3502980|-0.2754393	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342699|BX538325|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5201|NULL|0.3502980|-0.2754393	chr5	141788943	141790767	+	NA	NA	NA	NA	NA	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-60.04;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80"	NA	inter
CUST_7044_PI429285431	1.526681	A	0.8963896	A	1.54787760706957	0	lncRNA	6989-1_{1..3000}	"transcript_id ""ENST00000452690.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452690.1"" | genecode_v17"	chrX	 40122170	 40125169	+	ENSG00000236393.1	ENST00000452690.1	RP11-320G24.1	RP11-320G24.1-001	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10"	NA	inter
CUST_20694_PI429285431	1.4723611	A	1.9681517	A	0.709172943290751	0	lncRNA	22330-1_{1..620}	lnc-HERC1-1:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HERC1-1:8	chr15	 63886894	 63887513	-	lnc-HERC1-1	lnc-HERC1-1:8	ENSG00000259248.1	RP11-265M18.2	USP3	"hg19_refFlat_USP3:range=chr15:63796939-638830255'pad=0,hg19_refFlat_USP3:range=chr15:63796939-638830255'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.30chr15:63876894-63883663"	NA	inter
LNCA_21_P0005086	0.88286954	A	0.87983656	A	1.00210451292096	0	lncRNA	TCONS_00012359	NA	NA	NA	NA	XLOC_005919	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005919), lincRNA [TCONS_00012359]"	chr6:166471895-166471836	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012359	TCONS_00012359	chr6	166471836	166471895	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_433_PI429285431	0.8899307	A	0.88399297	A	1.00412420201875	0	lncRNA	425-1_{1..494}	"transcript_id ""ENST00000446766.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000446766.1"" | genecode_v17"	chr1	147494090	147494583	+	ENSG00000229952.1	ENST00000446766.1	RP6-74O6.3	RP6-74O6.3-001	NA	NA	NA	inter
LNCA_21_P0008027	0.88252646	A	0.8763697	A	1.00427665975495	0	lncRNA	TCONS_00021715	NA	NA	NA	NA	XLOC_010300	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010300), lincRNA [TCONS_00021715]"	chr13:22182372-22183801	hs|13q12.11	Agilent_HUMAN_G3V2	TCONS_00021715	TCONS_00021715	chr13	 22182372	 22183801	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19822_PI429285431	1.8552773	A	1.4039257	A	1.36732064180306	0	lncRNA	21479-1_{1..458}	lnc-SPAG5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SPAG5-1:1	chr17	 26928845	 26929302	-	lnc-SPAG5-1	lnc-SPAG5-1:1	ENSG00000264608.1	RP11-192H23.8	SPAG5	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10chr17:26918845-26926056"	NA	inter
CUST_43828_PI429285431	0.89701015	A	0.8985909	A	0.998904907646076	0	lncRNA	48552-1_{1..2172}	"gi|215276979|ref|NR_003143.2| Homo sapiens myeloid-associated differentiation marker-like (pseudogene) (MYADML), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|215276979|ref|NR_003143.2| Homo sapiens myeloid-associated differentiation marker-like (pseudogene) (MYADML), non-coding RNA"	Chr2	 33951128	 33953299	-	151325	NR_003143.2	NA	NA	NA	NA	NA	inter
CUST_7344_PI429285431	0.8933451	A	0.88798994	A	1.00371881174032	0	lncRNA	8953-1_{1..351}	"transcript_id ""ENST00000411328.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411328.1"" | genecode_v17"	chrX	 95665431	 95665781	-	ENSG00000223260.1	ENST00000411328.1	RN7SKP194	RN7SKP194-201	NA	NA	NA	inter
CUST_17669_PI429285431	1.2119777	A	1.2186954	A	0.995354469198568	0	lncRNA	19397-1_{1..270}	lnc-RGS18-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGS18-5:3	chr1	190448171	190448440	+	lnc-RGS18-5	lnc-RGS18-5:3	XLOC_000505	linc-RGS18-3	FAM5C	NA	chr1:190438171-190446759	inter
CUST_20411_PI429285431	1.5891471	A	1.3212419	A	1.20405825953896	0	lncRNA	22053-1_{1..1955}	lnc-USO1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USO1-2:1	chr4	 76751904	 76753858	+	lnc-USO1-2	lnc-USO1-2:1	ENSG00000229717.2	RP11-556N4.1	NA	"hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-32.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
LNCA_21_P0014387	1.4676394	A	1.3855469	A	1.05855226295717	0	lncRNA	XR_109558	XR_109558	XR_109558	NA	Hs.659115	LOC100507094	uncharacterized LOC100507094	NA	THC2499308	NA	"PREDICTED: Homo sapiens hypothetical LOC100507094 (LOC100507094), miscRNA [XR_109558]"	chr19:6190433-6190374	hs|19p13.3	Agilent_HUMAN_G3V2	XR_109558	XR_109558	chr19	  6190374	  6190433	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15149_PI429285431	0.9127702	A	1.082538	A	0.888985750820695	0	lncRNA	16812-1_{1..3000}	lnc-SEPT9-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-SEPT9-3:2	chr17	 75557027	 75560026	+	lnc-SEPT9-3	lnc-SEPT9-3:2	XLOC_012317	linc-TNRC6C-3	LOC100652922	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777758475'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20chr17:75548387-75550976"	NA	inter
LNCA_21_P0004168	0.8743616	A	0.87515754	A	0.999448448593534	0	lncRNA	ENST00000507813	NA	NA	NA	NA	XLOC_004960	NA	ENST00000507813	THC2704920	NA	"BROAD Institute lincRNA (XLOC_004960), lincRNA [TCONS_00009755]"	chr5:115639685-115638051	hs|5q23.1	Agilent_HUMAN_G3V2	ENST00000507813	ENST00000507813	chr5	115638051	115639685	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37052_PI429285431	4.8359222	P	5.8338194	P	0.500729306316697	0	lncRNA	38186-4_{9001..10381}	n345503|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1052|NULL|-1.5131900|-0.2775711	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345503|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1052|NULL|-1.5131900|-0.2775711	chr2	134892533	134893913	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60"	NA	inter
LNCA_21_P0002251	1.2639401	A	2.4383922	A	0.443051987824098	0	lncRNA	TCONS_00003756	NA	NA	NA	NA	XLOC_001558	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001558), lincRNA [TCONS_00003756]"	chr2:86144210-86144269	hs|2p11.2	Agilent_HUMAN_G3V2	TCONS_00003756	TCONS_00003756	chr2	 86144210	 86144269	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50259_PI429285431	1.1736866	A	1.0699962	A	1.07451855818361	0	lncRNA	53982-1_{1..850}	hg19_lincRNAsTranscripts_TCONS_l2_00028782 range=chr9:68726861-68749642 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028782 range=chr9:68726861-68749642 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	 68726861	 68727710	+	NA	NA	NA	NA	LOC100652863	NA	chr9:68726465-68750959	inter
CUST_44572_PI429285431	4.3639627	P	4.1953545	P	1.12397363911216	0	lncRNA	49154-1_{1..2680}	"gi|393185899|ref|NR_003719.2| Homo sapiens neuroblastoma breakpoint family, member 22, pseudogene (NBPF22P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393185899|ref|NR_003719.2| Homo sapiens neuroblastoma breakpoint family, member 22, pseudogene (NBPF22P), non-coding RNA"	Chr5	 85578262	 85580941	+	285622	NR_003719.2	NA	NA	NA	NA	NA	inter
CUST_26856_PI429285431	1.479431	A	1.1179273	A	1.28476429103052	0	lncRNA	28370-1_{1..370}	n323928|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055604|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055604|-1.4053400|-0.3079380	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323928|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055604|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055604|-1.4053400|-0.3079380	chrX	  1475917	  1476286	-	NA	NA	NA	NA	IL3RA	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-38.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-39.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-65.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-28.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-29.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80chrX:1465917-1488295"	NA	inner
CUST_49307_PI429285431	0.9248823	A	0.92091054	A	1.00275680726953	0	lncRNA	53125-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00022832 range=chr5:34164607-34179317 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022832 range=chr5:34164607-34179317 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 34164607	 34167606	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_10691_PI429285431	2.3468003	A	1.2750953	A	2.10191597777591	0	lncRNA	12225-1_{1..1789}	lnc-C9orf102-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-C9orf102-2:2	chr9	 98863399	 98865187	+	lnc-C9orf102-2	lnc-C9orf102-2:2	XLOC_007477	linc-HABP4-3	NA	NA	NA	inter
CUST_44083_PI429285431	0.92191756	A	1.2319508	A	0.80662317423886	0	lncRNA	48751-1_{1..1053}	"gi|317171914|ref|NR_037694.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 3 pseudogene (LOC100286922), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|317171914|ref|NR_037694.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 3 pseudogene (LOC100286922), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NR_037694.1	NA	NA	NA	NA	NA	Unknown
CUST_27377_PI429285431	1.3511701	A	1.4372356	A	0.942088501041612	0	lncRNA	28939-1_{1..396}	n324539|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000276169|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000276169|-1.2149300|-0.3576907	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324539|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000276169|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000276169|-1.2149300|-0.3576907	chr6	 32793784	 32794179	+	NA	NA	NA	NA	TAP2	NA	chr6:32789610-32804587	inner
CUST_51921_PI429285431	4.4362507	P	3.8644648	P	1.4863623877058	0	lncRNA	55461-1_{1..973}	hg19_lincRNAsTranscripts_TCONS_l2_00016357 range=chr20:57090570-57149054 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016357 range=chr20:57090570-57149054 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 57090570	 57091542	+	NA	NA	NA	NA	APCDD1L	NA	chr20:57080570-57089949	inter
CUST_48640_PI429285431	6.9295077	P	6.3096995	P	1.53667087403117	0	lncRNA	52487-1_{1..801}	hg19_lincRNAsTranscripts_TCONS_l2_00013784 range=chr2:91754577-91768889 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013784 range=chr2:91754577-91768889 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 91754577	 91755377	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20538_PI429285431	11.44979	P	10.855857	P	1.50935587110652	0	lncRNA	22179-1_{1..260}	lnc-ZNF503-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF503-2:1	chr10	 77191280	 77191539	-	lnc-ZNF503-2	lnc-ZNF503-2:1	ENSG00000236842.1	RP11-399K21.10	NA	NA	NA	inter
LNCA_21_P0013043	0.9237674	A	0.8979941	A	1.01802521831056	0	lncRNA	TCONS_l2_00024458	NA	NA	NA	NA	XLOC_l2_012748	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012748), lincRNA [TCONS_l2_00024458]"	chr6:143278231-143278290	hs|6q24.2	Agilent_HUMAN_G3V2	TCONS_l2_00024458	TCONS_l2_00024458	chr6	143278231	143278290	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008077	0.8878938	A	0.892902	A	0.996534598701562	0	lncRNA	TCONS_00021818	NA	NA	NA	NA	XLOC_010418	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010418), lincRNA [TCONS_00021818]"	chr13:68173046-68173105	hs|13q21.32	Agilent_HUMAN_G3V2	TCONS_00021818	TCONS_00021818	chr13	 68173046	 68173105	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005096	0.8863678	A	0.8897685	A	0.997645590363491	0	lncRNA	TCONS_00012376	NA	NA	NA	NA	XLOC_005943	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005943), lincRNA [TCONS_00012376]"	chr6:170441624-170441565	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012376	TCONS_00012376	chr6	170441565	170441624	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014816	2.6458426	A	2.4136932	A	1.17458360031687	0	lncRNA	XR_132649	XR_132649	XR_132649	NA	NA	LOC100506694	uncharacterized LOC100506694	NA	THC2521880	NA	"PREDICTED: Homo sapiens hypothetical LOC100506694, transcript variant 2 (LOC100506694), miscRNA [XR_132649]"	chr19:28289053-28290153	hs|19q11	Agilent_HUMAN_G3V2	XR_132649	XR_132649	chr19	 28289053	 28290153	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38676_PI429285431	1.2706306	A	0.91379833	A	1.28061096682457	0	lncRNA	39675-1_{1..919}	n383999|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yns.2||-0.9450650|-0.2854014	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n383999|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yns.2||-0.9450650|-0.2854014	chr21	 31121152	 31122070	+	NA	NA	NA	NA	GRIK1	NA	chr21:31111152-31146323	inner
LNCA_21_P0014126	3.9784946	P	3.6659293	P	1.24191402294834	0	lncRNA	XR_108511	XR_108511	XR_108511	NA	NA	LOC100505492	uncharacterized LOC100505492	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505492 (LOC100505492), miscRNA [XR_108511]"	chr3:169706135-169706076	hs|3q26.2	Agilent_HUMAN_G3V2	XR_108511	XR_108511	chr3	169706076	169706135	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16286_PI429285431	4.3529167	P	4.3086624	P	1.03115006084273	0	lncRNA	17991-1_{1..552}	lnc-LANCL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LANCL2-1:1	chr7	 55655789	 55656340	+	lnc-LANCL2-1	lnc-LANCL2-1:1	XLOC_006104	linc-ZNF713-3	NA	NA	NA	inter
LNCA_21_P0012504	0.9139476	A	0.88056993	A	1.02340534263814	0	lncRNA	ENST00000481334	NA	NA	NA	NA	XLOC_l2_009929	NA	ENST00000481334	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009929), lincRNA [TCONS_l2_00019925]"	chr3:148117632-148117691	hs|3q24	Agilent_HUMAN_G3V2	ENST00000481334	ENST00000481334	chr3	148117632	148117691	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011581	4.8444686	P	4.9171476	P	0.950870646646296	0	lncRNA	TCONS_l2_00011144	NA	NA	NA	NA	XLOC_l2_006026	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006026), lincRNA [TCONS_l2_00011144]"	chr17:20640403-20640344	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00011144	TCONS_l2_00011144	chr17	 20640344	 20640403	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11895_PI429285431	0.9198367	A	0.9420306	A	0.984734084520819	0	lncRNA	13477-1_{1..594}	lnc-BLCAP-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BLCAP-1:3	chr20	 36123987	 36124580	-	lnc-BLCAP-1	lnc-BLCAP-1:3	XLOC_013732	linc-GHRH	NA	NA	NA	inter
CUST_33725_PI429285431	0.89540553	A	1.3972232	A	0.706216449264811	0	lncRNA	35283-2_{3001..5670}	n340502|BX648465|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2964|NULL|-0.8104540|-0.1589256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340502|BX648465|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2964|NULL|-0.8104540|-0.1589256	chr17	  9077384	  9080053	-	NA	NA	NA	NA	NTN1	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80chr17:9064384-9092435"	NA	inner
CUST_22518_PI429285431	5.2926435	P	5.3611574	P	0.953619802717458	0	lncRNA	24105-1_{1..473}	lnc-THAP10-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THAP10-2:2	chr15	 71145686	 71146158	-	lnc-THAP10-2	lnc-THAP10-2:2	ENSG00000259537.1	RP11-795G3.3	THAP10	NA	chr15:71150976-71155864	inner
CUST_26933_PI429285431	0.9049554	A	0.9071771	A	0.998461220046756	0	lncRNA	28452-1_{1..713}	n324011|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053458|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053458|-1.1990000|-0.3683923	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324011|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053458|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053458|-1.1990000|-0.3683923	chr9	104092222	104092934	+	NA	NA	NA	NA	LPPR1	NA	chr9:104082222-104087417	inter
LNCA_21_P0014341	0.88466054	A	0.8750433	A	1.00668843110785	0	lncRNA	XR_109348	XR_109348	XR_109348	NA	Hs.730105	LOC100506001	uncharacterized LOC100506001	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506001 (LOC100506001), miscRNA [XR_109348]"	chr17:80440477-80440536	hs|17q25.3	Agilent_HUMAN_G3V2	XR_109348	XR_109348	chr17	 80440477	 80440536	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_746_PI429285431	0.91713256	A	0.9739566	A	0.961378176860182	0	lncRNA	737-1_{1..1405}	"transcript_id ""ENST00000417697.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417697.2"" | genecode_v17"	chr2	 11239977	 11241381	-	ENSG00000145063.10	ENST00000417697.2	AC062028.1	AC062028.1-201	C2orf50	NA	chr2:11242249-11282302	inter
CUST_28464_PI429285431	1.3853843	A	1.0003344	A	1.30590495500623	0	lncRNA	30129-1_{1..398}	n325797|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044154|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044154|-1.3237200|-0.4948601	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325797|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044154|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044154|-1.3237200|-0.4948601	chr13	 22942185	 22942582	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12855_PI429285431	5.480727	P	5.793434	P	0.805129636505788	0	lncRNA	14481-1_{1..265}	lnc-ATP6AP2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATP6AP2-6:1	chrX	 39681731	 39681995	+	lnc-ATP6AP2-6	lnc-ATP6AP2-6:1	XLOC_007957	linc-ATP6AP2-4	NA	NA	NA	inter
CUST_49126_PI429285431	0.91134113	A	0.9110153	A	1.00022587365145	0	lncRNA	52953-1_{1..306}	hg19_lincRNAsTranscripts_TCONS_l2_00020596 range=chr4:80006405-80031207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020596 range=chr4:80006405-80031207 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 80006405	 80006710	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16723_PI429285431	0.88822645	A	0.87729174	A	1.00760815948758	0	lncRNA	18430-1_{1..819}	lnc-HPS3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HPS3-2:1	chr3	148943795	148944613	+	lnc-HPS3-2	lnc-HPS3-2:1	XLOC_002865	linc-TM4SF4-3	CP	NA	chr3:148933795-148939832	inter
LNCA_21_P0001104	5.8611007	P	6.3373775	P	0.718830336146916	0	lncRNA	ENST00000421114	NA	NA	NA	NA	XLOC_000731	NA	ENST00000421114	NA	NA	"BROAD Institute lincRNA (XLOC_000731), lincRNA [TCONS_00000480]"	chr1:20739066-20738922	hs|1p36.12	Agilent_HUMAN_G3V2	ENST00000421114	ENST00000421114	chr1	 20738922	 20739066	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3938_PI429285431	0.8921962	A	1.2442154	A	0.783486759904495	0	lncRNA	3908-1_{1..878}	"transcript_id ""ENST00000529769.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000529769.1"" | genecode_v17"	chr11	 45744859	 45745736	+	ENSG00000254519.1	ENST00000529769.1	CTD-2210P24.1	CTD-2210P24.1-003	NA	NA	NA	inter
LNCA_21_P0004055	0.8846283	A	1.8333894	A	0.518077164557429	0	lncRNA	ENST00000433406	NA	NA	NA	NA	XLOC_004529	NA	ENST00000433406	NA	NA	"BROAD Institute lincRNA (XLOC_004529), lincRNA [TCONS_00009498]"	chr5:120661447-120661506	hs|5q23.1	Agilent_HUMAN_G3V2	ENST00000433406	ENST00000433406	chr5	120661447	120661506	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39328_PI429285431	4.2995877	P	4.3896747	P	0.9394660941259	0	lncRNA	40294-1_{1..364}	n386383|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ixj.1||-0.2729870|-0.2759580	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386383|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010ixj.1||-0.2729870|-0.2759580	chr5	 68914139	 68914502	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012307	5.9165144	P	6.5674887	P	0.636850082334765	0	lncRNA	BC107743	NA	BC107743	NA	NA	psiTPTE22	TPTE pseudogene	NA	THC2486935	NA	"BROAD Institute lincRNA (XLOC_l2_009281), lincRNA [TCONS_l2_00018139]"	chr22:17128531-17128590	hs|22q11.1	Agilent_HUMAN_G3V2	BC107743	BC107743	chr22	 17128531	 17128590	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12612_PI429285431	2.1687632	A	1.2684983	A	1.86640865165566	0	lncRNA	14225-1_{1..333}	lnc-PTBP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTBP2-1:1	chr1	 96986632	 96986964	+	lnc-PTBP2-1	lnc-PTBP2-1:1	XLOC_000313	linc-PTBP2-1	NA	NA	NA	inter
CUST_28258_PI429285431	1.1300843	A	1.133243	A	0.997812951084992	0	lncRNA	29894-1_{1..901}	n325551|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255096|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255096|-0.9375600|-0.2683135	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325551|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000255096|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000255096|-0.9375600|-0.2683135	chr17	 44068652	 44069552	-	NA	NA	NA	NA	MAPT	"hg19_refFlat_MAPT:range=chr17_ctg5_hap1:766441-8279955'pad=0,hg19_refFlat_MAPT:range=chr17_ctg5_hap1:766441-8279955'pad=0 3'pad=0 strand=- repeatMasking=none,-103.50;hg19_refFlat_MAPT:range=chr17:44039704-441015375'pad=0,hg19_refFlat_MAPT:range=chr17:44039704-441015375'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.50chr17:44058652-44089384"	NA	inner
CUST_26211_PI429285431	1.124938	A	1.9213943	A	0.575761688705625	0	lncRNA	27720-1_{1..914}	lnc-MRGPRF-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRGPRF-2:1	chr11	 68857697	 68858610	-	lnc-MRGPRF-2	lnc-MRGPRF-2:1	ENSG00000249137.2	RP11-554A11.3	TPCN2	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80chr11:68847697-68858072"	NA	inner
LNCA_21_P0004979	0.9251751	A	0.9789348	A	0.963422351431448	0	lncRNA	THC2766236	NA	NA	NA	NA	XLOC_005563	NA	NA	THC2766236	NA	"BROAD Institute lincRNA (XLOC_005563), lincRNA [TCONS_00012032]"	chr6:170494792-170494851	hs|6q27	Agilent_HUMAN_G3V2	THC2766236	THC2766236	chr6	170494792	170494851	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19217_PI429285431	5.489254	P	5.699564	P	0.864351483286186	0	lncRNA	20887-1_{1..564}	lnc-IDS-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IDS-1:3	chrX	148622240	148622803	-	lnc-IDS-1	lnc-IDS-1:3	ENSG00000241769.2	AF011889.4	CXorf40A	NA	chrX:148622519-148632086	inter
CUST_36538_PI429285431	1.8681766	A	2.2944074	A	0.744203561587342	0	lncRNA	37736-1_{1..1732}	n345038|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_587|NULL|-1.3242800|-0.3770076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345038|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_587|NULL|-1.3242800|-0.3770076	chr9	  2683509	  2685240	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43641_PI429285431	8.966748	P	9.352788	P	0.765227168015047	0	lncRNA	48399-2_{3001..4201}	"gi|254553487|ref|NR_028103.1| Homo sapiens DDB1 and CUL4 associated factor 8 (DCAF8), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254553487|ref|NR_028103.1| Homo sapiens DDB1 and CUL4 associated factor 8 (DCAF8), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_028103.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004254	1.7344003	A	1.5523735	A	1.13447655916753	0	lncRNA	TCONS_00009973	NA	NA	NA	NA	XLOC_004398	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004398), lincRNA [TCONS_00009973]"	chr5:56976533-56976592	hs|5q11.2	Agilent_HUMAN_G3V2	TCONS_00009973	TCONS_00009973	chr5	 56976533	 56976592	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12455_PI429285431	3.6086235	P	3.3707716	P	1.17923553150918	0	lncRNA	14067-1_{1..305}	lnc-GPR123-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPR123-2:2	chr10	134827828	134828132	+	lnc-GPR123-2	lnc-GPR123-2:2	XLOC_008678	linc-GPR123-2	NA	NA	NA	inter
CUST_48321_PI429285431	13.197749	P	12.589457	P	1.52445334691448	0	lncRNA	52179-1_{1..1123}	hg19_lincRNAsTranscripts_TCONS_l2_00000180 range=chr1:27533433-27535176 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000180 range=chr1:27533433-27535176 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 27533433	 27534555	+	NA	NA	NA	NA	WDTC1	NA	chr1:27533421-27545176	inter
CUST_42680_PI429285431	1.0141394	A	1.6602309	A	0.639009152459897	0	lncRNA	45599-1_{1..102}	ENST00000363791 ncrna:snoRNA chromosome:GRCh37:15:25319261:25319362:1 gene:ENSG00000200661 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363791 ncrna:snoRNA chromosome:GRCh37:15:25319261:25319362:1 gene:ENSG00000200661 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 25319261	 25319362	+	ENSG00000200661	ENST00000363791	NA	NA	SNRPN	NA	chr15:25309261-25329362	inter
LNCA_21_P0008305	0.90876216	A	1.1556702	A	0.842700543053117	0	lncRNA	ENST00000552826	NA	NA	NA	NA	XLOC_010777	NA	ENST00000552826	NA	NA	"BROAD Institute lincRNA (XLOC_010777), lincRNA [TCONS_00022444]"	chr14:27275476-27275535	hs|14q12	Agilent_HUMAN_G3V2	ENST00000552826	ENST00000552826	chr14	 27275476	 27275535	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51357_PI429285431	7.9398103	P	8.56789	P	0.647037081447349	0	lncRNA	54953-1_{1..2557}	hg19_lincRNAsTranscripts_TCONS_l2_00009524 range=chr15:84868064-84898920 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009524 range=chr15:84868064-84898920 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 84868064	 84870620	-	NA	NA	NA	NA	NA	"hg19_refFlat_DNM1:range=chr9:130965750-1310154015'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310154015'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50"	NA	inter
CUST_38925_PI429285431	0.9053276	A	1.317367	A	0.75156021364389	0	lncRNA	39914-1_{1..1514}	n385029|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qjp.2||-0.9241350|-0.3027357	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n385029|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003qjp.2||-0.9241350|-0.3027357	chr6	143875466	143876979	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6782_PI429285431	1.1617523	A	1.1765525	A	0.989793724254985	0	lncRNA	6729-1_{1..467}	"transcript_id ""ENST00000602454.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602454.1"" | genecode_v17"	chr21	 17789459	 17789925	-	ENSG00000270139.1	ENST00000602454.1	AP001172.3	AP001172.3-001	NA	NA	NA	inter
LNCA_21_P0012527	2.4478552	A	0.91184473	A	2.89991471109022	0	lncRNA	ENST00000411596	NA	NA	NA	NA	XLOC_l2_010083	NA	ENST00000411596	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010083), lincRNA [TCONS_l2_00020054]"	chr3:197837235-197838279	hs|3q29	Agilent_HUMAN_G3V2	ENST00000411596	ENST00000411596	chr3	197837235	197838279	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8472_PI429285431	2.9350307	A	2.9854918	A	0.965627655185681	0	lncRNA	10038-1_{1..594}	lnc-WRNIP1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WRNIP1-2:1	chr6	  2399117	  2399710	+	lnc-WRNIP1-2	lnc-WRNIP1-2:1	ENSG00000250903	RP1-80B9.2	NA	NA	NA	inter
LNCA_21_P0011515	1.2988994	A	0.89675194	A	1.32147346851895	0	lncRNA	TCONS_l2_00010577	NA	NA	NA	NA	XLOC_l2_005672	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005672), lincRNA [TCONS_l2_00010577]"	chr17:15767409-15767468	hs|17p12	Agilent_HUMAN_G3V2	TCONS_l2_00010577	TCONS_l2_00010577	chr17	 15767409	 15767468	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43061_PI429285431	15.143491	P	15.253344	P	0.926682479200191	0	lncRNA	46867-1_{1..122}	ENST00000516967 ncrna:snRNA chromosome:GRCh37:11:122319918:122320039:1 gene:ENSG00000252776 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516967 ncrna:snRNA chromosome:GRCh37:11:122319918:122320039:1 gene:ENSG00000252776 gene_biotype:snRNA transcript_biotype:snRNA	chr11	122319918	122320039	+	ENSG00000252776	ENST00000516967	NA	NA	NA	NA	NA	inter
CUST_37191_PI429285431	5.8107414	P	5.3710337	P	1.35632949786417	0	lncRNA	38303-1_{1..872}	n345622|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1171|NULL|-1.2882700|-0.3716256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345622|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1171|NULL|-1.2882700|-0.3716256	chr4	  1173235	  1174106	-	NA	NA	NA	NA	SPON2	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10chr4:1163235-1195110"	NA	inner
LNCA_21_P0002222	4.730937	P	4.529956	P	1.14947970952122	0	lncRNA	TCONS_00003696	NA	NA	NA	NA	XLOC_001485	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001485), lincRNA [TCONS_00003696]"	chr2:58521143-58521676	hs|2p16.1	Agilent_HUMAN_G3V2	TCONS_00003696	TCONS_00003696	chr2	 58521143	 58521676	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25744_PI429285431	0.9278538	A	1.0696278	A	0.906403916464639	0	lncRNA	27270-1_{1..558}	lnc-MRC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRC2-1:1	chr17	 60813447	 60814004	+	lnc-MRC2-1	lnc-MRC2-1:1	ENSG00000265702.1	RP11-156L14.1	10-Mar	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00chr17:60803447-60823468"	NA	inter
CUST_26867_PI429285431	2.4146013	A	2.5643084	A	0.901433455586775	0	lncRNA	28384-1_{1..428}	n323942|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054947|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054947|-0.8086570|-0.1953559	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323942|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054947|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054947|-0.8086570|-0.1953559	chr9	136558848	136559275	-	NA	NA	NA	NA	SARDH	NA	chr9:136548848-136586911	inner
CUST_42678_PI429285431	1.004664	A	1.2593921	A	0.838145082236739	0	lncRNA	45594-1_{1..72}	ENST00000364448 ncrna:snoRNA chromosome:GRCh37:14:101458256:101458327:1 gene:ENSG00000201318 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364448 ncrna:snoRNA chromosome:GRCh37:14:101458256:101458327:1 gene:ENSG00000201318 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	101458256	101458327	+	ENSG00000201318	ENST00000364448	NA	NA	NA	NA	NA	inter
CUST_9030_PI429285431	1.4335647	A	0.89303255	A	1.45450892603409	0	lncRNA	10557-1_{1..2210}	lnc-GABARAPL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GABARAPL2-1:1	chr16	 75529158	 75531367	+	lnc-GABARAPL2-1	lnc-GABARAPL2-1:1	ENSG00000203472	AC009163.1	CHST6	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50chr16:75519158-75528926"	NA	inter
LNCA_21_P0004129	5.5260367	P	5.2805185	P	1.1855185195311	0	lncRNA	ENST00000504349	NA	NA	NA	NA	XLOC_004828	NA	ENST00000504349	NA	NA	"BROAD Institute lincRNA (XLOC_004828), lincRNA [TCONS_00009667]"	chr5:55609791-55609732	hs|5q11.2	Agilent_HUMAN_G3V2	ENST00000504349	ENST00000504349	chr5	 55609732	 55609791	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009639	3.6239455	P	3.172722	P	1.36719923984815	0	lncRNA	TCONS_00026740	NA	NA	NA	NA	XLOC_012892	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012892), lincRNA [TCONS_00026740]"	chr18:73938508-73938449	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026740	TCONS_00026740	chr18	 73938449	 73938508	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010673	0.88282436	A	0.87578315	A	1.00489252436211	0	lncRNA	TCONS_l2_00001807	NA	NA	NA	NA	XLOC_l2_001332	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001332), lincRNA [TCONS_l2_00001807]"	chr1:224142082-224142023	hs|1q42.11	Agilent_HUMAN_G3V2	TCONS_l2_00001807	TCONS_l2_00001807	chr1	224142023	224142082	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012173	1.0344211	A	1.7735347	A	0.599107334190396	0	lncRNA	THC2783854	NA	NA	NA	NA	XLOC_l2_009009	NA	NA	THC2783854	NA	"BROAD Institute lincRNA (XLOC_l2_009009), lincRNA [TCONS_l2_00016988]"	NA	NA	Agilent_HUMAN_G3V2	THC2783854	THC2783854	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4486_PI429285431	2.2238584	A	3.095556	A	0.546503408872515	0	lncRNA	4435-1_{1..2815}	"transcript_id ""ENST00000535544.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535544.1"" | genecode_v17"	chr12	127226211	127229025	+	ENSG00000189238.4	ENST00000535544.1	RP11-173C20.1	RP11-173C20.1-002	NA	NA	NA	inter
LNCA_21_P0007401	2.5058136	A	2.5060399	A	0.999843153094802	0	lncRNA	TCONS_00019764	NA	NA	NA	NA	XLOC_009558	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009558), lincRNA [TCONS_00019764]"	chr11:113888794-113888735	hs|11q23.2	Agilent_HUMAN_G3V2	TCONS_00019764	TCONS_00019764	chr11	113888735	113888794	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50216_PI429285431	0.8922999	A	0.8824364	A	1.00686028187701	0	lncRNA	53940-3_{6001..7030}	hg19_lincRNAsTranscripts_TCONS_l2_00029312 range=chr9:66523686-66559785 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029312 range=chr9:66523686-66559785 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 66529686	 66530715	-	NA	NA	NA	NA	LOC100132004	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70chr9:66544359-66569785"	NA	inter
CUST_19592_PI429285431	5.9169855	P	5.279949	P	1.55513141589332	0	lncRNA	21248-1_{1..508}	lnc-AGAP5-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGAP5-1:6	chr10	 75435601	 75436108	-	lnc-AGAP5-1	lnc-AGAP5-1:6	ENSG00000251582.1	RP11-464F9.9	AGAP5	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80chr10:75434033-75445692"	NA	inner
CUST_17507_PI429285431	0.9031324	A	0.90598875	A	0.998022087702456	0	lncRNA	19232-1_{1..653}	lnc-IGFBP7-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-IGFBP7-5:5	chr4	 59853822	 59854474	-	lnc-IGFBP7-5	lnc-IGFBP7-5:5	XLOC_003962	linc-IGFBP7-7	NA	NA	NA	inter
LNCA_21_P0012261	1.1504682	A	1.1009663	A	1.03490755347845	0	lncRNA	TCONS_l2_00017656	NA	NA	NA	NA	XLOC_l2_009331	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009331), lincRNA [TCONS_l2_00017656]"	chr22:25726072-25726131	hs|22q11.23	Agilent_HUMAN_G3V2	TCONS_l2_00017656	TCONS_l2_00017656	chr22	 25726072	 25726131	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31396_PI429285431	5.001596	P	5.1607995	P	0.895519343296451	0	lncRNA	33173-1_{1..3000}	n337863|AK125879|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|246|NULL|-0.2585130|-0.3162182	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337863|AK125879|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|246|NULL|-0.2585130|-0.3162182	chr1	 36391432	 36394431	+	NA	NA	NA	NA	EIF2C3	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90chr1:36396683-36405210"	NA	inter
LNCA_21_P0002122	0.88464785	A	0.87816894	A	1.00450093712536	0	lncRNA	ENST00000431455	NA	NA	NA	NA	XLOC_002407	NA	ENST00000431455	NA	NA	"BROAD Institute lincRNA (XLOC_002407), lincRNA [TCONS_00003450]"	chr2:177389675-177389616	hs|2q31.1	Agilent_HUMAN_G3V2	ENST00000431455	ENST00000431455	chr2	177389616	177389675	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51731_PI429285431	4.279628	P	5.1098466	P	0.56244401326056	0	lncRNA	55284-2_{3001..5931}	hg19_lincRNAsTranscripts_TCONS_l2_00011993 range=chr18:15178761-15197762 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011993 range=chr18:15178761-15197762 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 15181761	 15184691	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80"	NA	inter
LNCA_21_P0013169	5.286547	P	5.9149084	P	0.646910753604789	0	lncRNA	TCONS_l2_00025628	NA	NA	NA	NA	XLOC_l2_013267	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013267), lincRNA [TCONS_l2_00025628]"	chr7:5894029-5894088	hs|7p22.1	Agilent_HUMAN_G3V2	TCONS_l2_00025628	TCONS_l2_00025628	chr7	  5894029	  5894088	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10993_PI429285431	0.8978487	A	0.8877214	A	1.00704440535423	0	lncRNA	12537-1_{1..1772}	lnc-HIST1H1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HIST1H1A-1:1	chr6	 26006468	 26008239	-	lnc-HIST1H1A-1	lnc-HIST1H1A-1:1	XLOC_005647	linc-SLC17A2	NA	NA	NA	inter
CUST_38062_PI429285431	0.9114169	A	1.1681771	A	0.836965348735371	0	lncRNA	39140-1_{1..2097}	n377635|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030033||-0.5712050|-0.1742654	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377635|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00030033||-0.5712050|-0.1742654	chr7	    43231	    45327	-	NA	NA	NA	NA	LOC100132858	NA	chr7:33231-36378	inter
CUST_1025_PI429285431	1.9670875	A	0.9186947	A	2.06822450763396	0	lncRNA	1014-1_{1..3000}	"transcript_id ""ENST00000414159.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414159.2"" | genecode_v17"	chr2	111467152	111470151	-	ENSG00000235881.2	ENST00000414159.2	AC114776.3	AC114776.3-001	NA	"hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00"	NA	inter
LNCA_21_P0006734	3.130452	P	3.2356286	P	0.929691132349343	0	lncRNA	ENST00000419836	NA	NA	NA	NA	XLOC_008726	NA	ENST00000419836	NA	NA	"BROAD Institute lincRNA (XLOC_008726), lincRNA [TCONS_00017924]"	chr10:9800805-9800746	hs|10p14	Agilent_HUMAN_G3V2	ENST00000419836	ENST00000419836	chr10	  9800746	  9800805	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25946_PI429285431	0.91774946	A	0.92879236	A	0.992374864974147	0	lncRNA	27465-1_{1..441}	lnc-HPGDS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HPGDS-2:1	chr4	 94240750	 94241190	-	lnc-HPGDS-2	lnc-HPGDS-2:1	ENSG00000250908.1	RP11-703C10.1	GRID2	NA	chr4:94230750-94250937	inner
CUST_11866_PI429285431	1.5020797	A	1.8918991	A	0.763225140840644	0	lncRNA	13445-1_{1..312}	lnc-C9orf93-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf93-1:1	chr9	 16122224	 16122535	+	lnc-C9orf93-1	lnc-C9orf93-1:1	XLOC_007291	linc-CNTLN-4	NA	NA	NA	inter
LNCA_21_P0013494	0.9232163	A	0.97447693	A	0.965092660356342	0	lncRNA	TCONS_l2_00027816	NA	NA	NA	NA	XLOC_l2_014234	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014234), lincRNA [TCONS_l2_00027816]"	chr8:64699203-64699262	hs|8q12.3	Agilent_HUMAN_G3V2	TCONS_l2_00027816	TCONS_l2_00027816	chr8	 64699203	 64699262	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47616_PI429285431	0.91378546	A	0.9172374	A	0.997610157752431	0	lncRNA	51611-1_{1..3000}	"gi|371940889|ref|NR_045864.1| Homo sapiens armadillo repeat containing, X-linked 4 (ARMCX4), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|371940889|ref|NR_045864.1| Homo sapiens armadillo repeat containing, X-linked 4 (ARMCX4), transcript variant 3, non-coding RNA"	NW_004070883.1	   166929	   169928	+	100131755	NR_045864.1	NA	NA	NA	NA	NA	Unknown
CUST_41676_PI429285431	3.4859896	P	4.040965	P	0.680668664518501	0	lncRNA	43119-1_{1..91}	ENST00000583272 ncrna:miRNA chromosome:GRCh37:2:110844010:110844100:-1 gene:ENSG00000264979 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583272 ncrna:miRNA chromosome:GRCh37:2:110844010:110844100:-1 gene:ENSG00000264979 gene_biotype:miRNA transcript_biotype:miRNA	chr2	110844010	110844100	-	ENSG00000264979	ENST00000583272	NA	NA	MALL	NA	chr2:110841447-110854100	inner
LNCA_21_P0005126	0.9173499	A	0.9447385	A	0.981194736590744	0	lncRNA	TCONS_00011907	NA	NA	NA	NA	XLOC_005406	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005406), lincRNA [TCONS_00011907]"	chr6:103987318-103987377	hs|6q16.3	Agilent_HUMAN_G3V2	TCONS_00011907	TCONS_00011907	chr6	103987318	103987377	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37889_PI429285431	3.773683	P	2.8041606	A	1.95819223401328	0	lncRNA	38979-1_{1..1321}	n346424|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1974|NULL|-1.2954800|-0.4003505	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346424|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1974|NULL|-1.2954800|-0.4003505	chr2	171627517	171628837	+	NA	NA	NA	NA	LOC285141	NA	chr2:171640296-171651631	inter
CUST_33845_PI429285431	9.4394245	P	9.049838	P	1.31001787749045	0	lncRNA	35390-3_{6001..6466}	n340631|D87076|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3093|NULL|9.2830400|-0.1678169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340631|D87076|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3093|NULL|9.2830400|-0.1678169	chr5	133867797	133868262	+	NA	NA	NA	NA	PHF15	NA	chr5:133861798-133918918	inner
CUST_11630_PI429285431	3.0810037	A	3.797687	P	0.608494741247162	0	lncRNA	13207-1_{1..1755}	lnc-AASDHPPT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AASDHPPT-1:1	chr11	106133433	106135187	+	lnc-AASDHPPT-1	lnc-AASDHPPT-1:1	XLOC_009269	linc-ELMOD1	NA	NA	NA	inter
CUST_17252_PI429285431	0.9025452	A	0.9074099	A	0.996633725560042	0	lncRNA	18970-1_{1..417}	lnc-TBC1D1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBC1D1-1:3	chr4	 38288782	 38289198	+	lnc-TBC1D1-1	lnc-TBC1D1-1:3	XLOC_003508	linc-KLF3-5	NA	NA	NA	inter
LNCA_21_P0009493	0.8849569	A	1.997529	A	0.46246878588543	0	lncRNA	TCONS_00026354	NA	NA	NA	NA	XLOC_012707	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012707), lincRNA [TCONS_00026354]"	chr18:66832328-66832387	hs|18q22.2	Agilent_HUMAN_G3V2	TCONS_00026354	TCONS_00026354	chr18	 66832328	 66832387	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_496_PI429285431	0.8944705	A	0.9758604	A	0.945146648707161	0	lncRNA	487-1_{1..444}	"transcript_id ""ENST00000422858.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422858.1"" | genecode_v17"	chr1	180876937	180877380	+	ENSG00000225857.1	ENST00000422858.1	RP11-46A10.2	RP11-46A10.2-001	KIAA1614	NA	chr1:180882313-180888078	inter
LNCA_33_P3227731	8.203642	P	7.1676607	P	2.05050789722448	0	lncRNA	XR_132557	XR_132557	XR_132557	100506390	NA	LOC100506390	"RAP1B, member of RAS oncogene family pseudogene"	NA	NA	NA	"PREDICTED: Homo sapiens ras-related protein Rap-1b-like (LOC100506390), miscRNA [XR_132557]"	chr9:18718018-18717971	hs|9p22.1	Agilent_HUMAN_G3V2	XR_132557	XR_132557	chr9	 18717971	 18718018	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012862	2.9186728	A	2.7196136	A	1.14794951820849	0	lncRNA	TCONS_l2_00022638	NA	NA	NA	NA	XLOC_l2_011854	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011854), lincRNA [TCONS_l2_00022638]"	chr5:173957208-173957267	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_l2_00022638	TCONS_l2_00022638	chr5	173957208	173957267	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009739	11.702789	P	11.403551	P	1.23049432146162	0	lncRNA	TCONS_00027180	NA	NA	NA	NA	XLOC_013220	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013220), lincRNA [TCONS_00027180]"	chr19:10349825-10349766	hs|19p13.2	Agilent_HUMAN_G3V2	TCONS_00027180	TCONS_00027180	chr19	 10349766	 10349825	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21158_PI429285431	4.157781	P	4.250468	P	0.93777452932474	0	lncRNA	22781-1_{1..615}	lnc-SFI1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SFI1-1:2	chr22	 31859716	 31860330	+	lnc-SFI1-1	lnc-SFI1-1:2	ENSG00000224623.1	RP11-247I13.8	EIF4ENIF1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_EIF4ENIF1:range=chr22:31835866-318847045'pad=0,hg19_refFlat_EIF4ENIF1:range=chr22:31835866-318847045'pad=0 3'pad=0 strand=- repeatMasking=none,-34.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40chr22:31849716-31870190"	NA	inner
CUST_42943_PI429285431	5.4446974	P	5.1325474	P	1.24155657203122	0	lncRNA	46063-1_{1..80}	ENST00000362361 ncrna:snoRNA chromosome:GRCh37:7:62636318:62636397:-1 gene:ENSG00000199231 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362361 ncrna:snoRNA chromosome:GRCh37:7:62636318:62636397:-1 gene:ENSG00000199231 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 62636318	 62636397	-	ENSG00000199231	ENST00000362361	NA	NA	NA	NA	NA	inter
LNCA_21_P0011102	0.8841376	A	0.8747652	A	1.00651760035375	0	lncRNA	ENST00000552998	NA	NA	NA	NA	XLOC_l2_003419	NA	ENST00000552998	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003419), lincRNA [TCONS_l2_00006313]"	chr12:70615551-70615492	hs|12q15	Agilent_HUMAN_G3V2	ENST00000552998	ENST00000552998	chr12	 70615492	 70615551	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44665_PI429285431	0.9162421	A	0.92063963	A	0.99695650532764	0	lncRNA	49226-1_{1..2037}	"gi|224028265|ref|NR_026970.1| Homo sapiens LY86 antisense RNA 1 (LY86-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224028265|ref|NR_026970.1| Homo sapiens LY86 antisense RNA 1 (LY86-AS1), non-coding RNA"	Chr6	  6346698	  6348734	-	285780	NR_026970.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0011485	1.3746933	A	0.8750598	A	1.41385434339316	0	lncRNA	THC2740056	NA	NA	NA	NA	XLOC_l2_005503	NA	NA	THC2740056	NA	"BROAD Institute lincRNA (XLOC_l2_005503), lincRNA [TCONS_l2_00010198]"	chr16:056195864-056195805	hs|16q12.2	Agilent_HUMAN_G3V2	THC2740056	THC2740056	chr16	 56195805	 56195864	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20257_PI429285431	0.88641155	A	1.2866027	A	0.757757877410417	0	lncRNA	21900-1_{1..614}	lnc-MBOAT1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MBOAT1-5:1	chr6	 20800825	 20801438	-	lnc-MBOAT1-5	lnc-MBOAT1-5:1	ENSG00000233848.1	RP3-348I23.2	CDKAL1	NA	chr6:20790825-20810925	inner
CUST_48468_PI429285431	6.250296	P	6.16326	P	1.0621856912013	0	lncRNA	52320-1_{1..1538}	hg19_lincRNAsTranscripts_TCONS_l2_00001805 range=chr1:224139119-224142262 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001805 range=chr1:224139119-224142262 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	224139119	224140656	-	NA	NA	NA	NA	LOC441124	NA	chr1:224133977-224141141	inter
CUST_21027_PI429285431	1.0371033	A	0.89422846	A	1.10410305731896	0	lncRNA	22655-1_{1..456}	lnc-GSTCD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	>lnc-GSTCD-1:1	chr4	106491061	106491516	+	lnc-GSTCD-1	lnc-GSTCD-1:1	ENSG00000249885.1	ARHGEF38-IT1	ARHGEF38	NA	chr4:106481061-106501395	inner
CUST_22420_PI429285431	1.1446234	A	1.2897325	A	0.904310988846464	0	lncRNA	24009-1_{1..335}	lnc-GPR183-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-GPR183-1:1	chr13	100144558	100144892	-	lnc-GPR183-1	lnc-GPR183-1:1	ENSG00000225985.1	RP11-214F16.3	TM9SF2	NA	chr13:100153728-100154751	inter
CUST_16961_PI429285431	4.868858	P	4.550449	P	1.24695465231908	0	lncRNA	18673-1_{1..486}	lnc-DHX37-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-8:1	chr12	126933766	126934251	-	lnc-DHX37-8	lnc-DHX37-8:1	XLOC_010242	linc-DHX37-9	NA	NA	NA	inter
CUST_11908_PI429285431	0.908662	A	0.90871626	A	0.999962390541236	0	lncRNA	13489-2_{3001..6000}	lnc-HK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-HK2-1:1	chr2	 75168435	 75171434	+	lnc-HK2-1	lnc-HK2-1:1	XLOC_001537	linc-POLE4	NA	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-13.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80"	NA	inter
CUST_46800_PI429285431	2.3193934	A	3.1207647	A	0.573803510667303	0	lncRNA	50946-1_{1..537}	"gi|310123614|ref|XR_109456.1| PREDICTED: Homo sapiens uncharacterized LOC100506643 (LOC100506643), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310123614|ref|XR_109456.1| PREDICTED: Homo sapiens uncharacterized LOC100506643 (LOC100506643), misc_RNA"	NA	NA	NA	NA	NA	XR_109456.1	NA	NA	NA	NA	NA	Unknown
CUST_17349_PI429285431	0.8776357	A	0.8769614	A	1.00046749838718	0	lncRNA	19069-1_{1..956}	lnc-C1orf222-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf222-1:2	chr1	  1946620	  1947575	-	lnc-C1orf222-1	lnc-C1orf222-1:2	XLOC_000675	linc-KIAA1751-1	GABRD	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00chr1:1950768-1956876"	NA	inter
CUST_15037_PI429285431	1.1785338	A	0.9223694	A	1.19429927377934	0	lncRNA	16700-1_{1..2828}	lnc-PLEKHB2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLEKHB2-1:5	chr2	132165418	132168245	+	lnc-PLEKHB2-1	lnc-PLEKHB2-1:5	XLOC_001674	linc-TUBA3D-2	NA	NA	NA	inter
LNCA_32_P793319	8.261899	P	8.820175	P	0.679113209634046	0	lncRNA	XR_109457	XR_109457	XR_109457	NA	Hs.652768	NA	NA	NA	THC2486057	NA	"PREDICTED: Homo sapiens hypothetical LOC100131744 (LOC100131744), miscRNA [XR_109457]"	chr17:32397764-32397705	hs|17q12	Agilent_HUMAN_G3V2	XR_109457	XR_109457	chr17	 32397705	 32397764	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37424_PI429285431	0.9267488	A	1.7685306	A	0.557954042381225	0	lncRNA	38530-3_{6001..9000}	n345879|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1428|NULL|-1.2825800|-0.2416485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345879|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1428|NULL|-1.2825800|-0.2416485	chr11	  3408167	  3411166	+	NA	NA	NA	NA	ZNF195	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00chr11:3392167-3400452"	NA	inter
CUST_42819_PI429285431	6.6279287	P	7.080299	P	0.730841113380494	0	lncRNA	45827-1_{1..153}	ENST00000365493 ncrna:snoRNA chromosome:GRCh37:3:39452545:39452697:1 gene:ENSG00000202363 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365493 ncrna:snoRNA chromosome:GRCh37:3:39452545:39452697:1 gene:ENSG00000202363 gene_biotype:snoRNA transcript_biotype:snoRNA	chr3	 39452545	 39452697	+	ENSG00000202363	ENST00000365493	NA	NA	RPSA	NA	chr3:39448204-39454033	inter
CUST_20784_PI429285431	1.0487552	A	1.0144216	A	1.02408367591386	0	lncRNA	22417-1_{1..1176}	lnc-C4orf21-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C4orf21-5:1	chr4	113992994	113994169	-	lnc-C4orf21-5	lnc-C4orf21-5:1	ENSG00000248152.1	RP11-650J17.1	ANK2	NA	chr4:113982994-114003118	inner
LNCA_21_P0009282	2.1185312	A	0.97906834	A	2.20298986829757	0	lncRNA	TCONS_00025511	NA	NA	NA	NA	XLOC_012322	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012322), lincRNA [TCONS_00025511]"	chr17:76291137-76291196	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_00025511	TCONS_00025511	chr17	 76291137	 76291196	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2296_PI429285431	1.160526	A	1.037496	A	1.08901966062788	0	lncRNA	2288-1_{1..567}	"transcript_id ""ENST00000523745.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523745.1"" | genecode_v17"	chr5	104109342	104109908	+	ENSG00000253776.1	ENST00000523745.1	RP11-6N13.4	RP11-6N13.4-001	NA	NA	NA	inter
LNCA_21_P0008999	7.9514127	P	7.611486	P	1.26569228543744	0	lncRNA	TCONS_00024536	NA	NA	NA	NA	XLOC_011849	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011849), lincRNA [TCONS_00024536]"	chr16:1041144-1041085	hs|16p13.3	Agilent_HUMAN_G3V2	TCONS_00024536	TCONS_00024536	chr16	  1041085	  1041144	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19717_PI429285431	0.9101484	A	1.6210365	A	0.610943935747111	0	lncRNA	21374-1_{1..691}	lnc-TSPAN5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TSPAN5-2:1	chr4	 98554629	 98555319	-	lnc-TSPAN5-2	lnc-TSPAN5-2:1	ENSG00000254044.1	RP11-681L8.1	C4orf37	NA	chr4:98544629-98564974	inner
CUST_48402_PI429285431	1.674567	A	1.3738433	A	1.23176214799796	0	lncRNA	52255-1_{1..2527}	hg19_lincRNAsTranscripts_TCONS_l2_00001485 range=chr1:142711519-142716790 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001485 range=chr1:142711519-142716790 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	142711519	142714045	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_525_PI429285431	4.7930856	P	5.0829225	P	0.817994529497816	0	lncRNA	517-1_{1..684}	"transcript_id ""ENST00000457321.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457321.1"" | genecode_v17"	chr1	192498709	192499392	+	ENSG00000236069.1	ENST00000457321.1	RP5-1011O1.3	RP5-1011O1.3-001	NA	NA	NA	inter
LNCA_21_P0010638	0.8982595	A	1.4805396	A	0.667907352042809	0	lncRNA	TCONS_l2_00001396	NA	NA	NA	NA	XLOC_l2_001011	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001011), lincRNA [TCONS_l2_00001396]"	chr1:95285519-95235818	hs|1p21.3	Agilent_HUMAN_G3V2	TCONS_l2_00001396	TCONS_l2_00001396	chr1	 95235818	 95285519	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007637	0.89694434	A	0.9070485	A	0.993020798524402	0	lncRNA	TCONS_00020582	NA	NA	NA	NA	XLOC_009897	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009897), lincRNA [TCONS_00020582]"	chr12:116974466-116974525	hs|12q24.22	Agilent_HUMAN_G3V2	TCONS_00020582	TCONS_00020582	chr12	116974466	116974525	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13073_PI429285431	1.9527407	A	1.5920609	A	1.28403079221352	0	lncRNA	14700-1_{1..496}	lnc-C5orf49-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf49-3:1	chr5	  7348086	  7348581	-	lnc-C5orf49-3	lnc-C5orf49-3:1	XLOC_004726	linc-NSUN2-2	NA	NA	NA	inter
LNCA_21_P0008977	5.8391433	P	5.839225	P	0.999943371478804	0	lncRNA	TCONS_00024481	NA	NA	NA	NA	XLOC_011798	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011798), lincRNA [TCONS_00024481]"	chr16:79796387-79796446	hs|16q23.2	Agilent_HUMAN_G3V2	TCONS_00024481	TCONS_00024481	chr16	 79796387	 79796446	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25751_PI429285431	8.845428	P	8.763051	P	1.05876103044196	0	lncRNA	27277-1_{1..351}	lnc-TNFRSF25-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TNFRSF25-1:1	chr1	  6506972	  6507322	-	lnc-TNFRSF25-1	lnc-TNFRSF25-1:1	ENSG00000231868.1	RP1-202O8.2	ESPN	NA	chr1:6496972-6517066	inner
CUST_11844_PI429285431	1.0658052	A	1.79568	A	0.60295623733945	0	lncRNA	13421-1_{1..499}	lnc-RP11-93B14.6.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-93B14.6.1-1:1	chr20	 61266841	 61267339	-	lnc-RP11-93B14.6.1-1	lnc-RP11-93B14.6.1-1:1	XLOC_013836	linc-GATA5-2	SLCO4A1	NA	chr20:61273797-61276856	inter
CUST_29955_PI429285431	1.093598	A	0.8798674	A	1.15968308219814	0	lncRNA	31721-1_{1..443}	n334161|M97713|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196976|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196976|0.0606226|-0.1215187	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334161|M97713|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196976|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196976|0.0606226|-0.1215187	chr7	142448097	142448539	+	NA	NA	NA	NA	PRSS1	NA	chr7:142457319-142460927	inner
CUST_43995_PI429285431	1.6124433	A	0.9891983	A	1.54033590773781	0	lncRNA	48692-1_{1..3000}	"gi|365733614|ref|NR_045682.1| Homo sapiens myosin IIIB (MYO3B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|365733614|ref|NR_045682.1| Homo sapiens myosin IIIB (MYO3B), transcript variant 3, non-coding RNA"	Chr2	171034655	171037654	+	140469	NR_045682.1	NA	NA	NA	"hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40"	NA	inter
CUST_3565_PI429285431	1.1295055	A	0.9730997	A	1.11450709431598	0	lncRNA	3535-1_{1..886}	"transcript_id ""ENST00000420883.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420883.1"" | genecode_v17"	chr9	138137542	138138427	-	ENSG00000233936.1	ENST00000420883.1	RP11-399H11.2	RP11-399H11.2-001	NA	NA	NA	inter
CUST_20052_PI429285431	1.3670717	A	0.8851296	A	1.39662248038292	0	lncRNA	21703-1_{1..557}	lnc-NOC3L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NOC3L-1:1	chr10	 96046598	 96047154	-	lnc-NOC3L-1	lnc-NOC3L-1:1	ENSG00000229130.2	RP11-76P2.3	PLCE1	NA	chr10:96036598-96056828	inner
CUST_49390_PI429285431	1.8315605	A	1.0934926	A	1.66794058691524	0	lncRNA	53203-1_{1..243}	hg19_lincRNAsTranscripts_TCONS_l2_00022561 range=chr5:142136250-142137488 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022561 range=chr5:142136250-142137488 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	142136250	142136492	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16347_PI429285431	0.89190483	A	0.8811326	A	1.00749468647326	0	lncRNA	18047-1_{1..403}	lnc-TFAP2E-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TFAP2E-1:1	chr1	 36134530	 36134932	+	lnc-TFAP2E-1	lnc-TFAP2E-1:1	XLOC_000138	linc-EIF2C4-2	NA	NA	NA	inter
CUST_32557_PI429285431	1.4697714	A	0.891472	A	1.49308820915385	0	lncRNA	34221-1_{1..2299}	n339173|AL832887|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1604|NULL|-0.2910490|-0.2782092	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339173|AL832887|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1604|NULL|-0.2910490|-0.2782092	chr2	234259777	234262075	-	NA	NA	NA	NA	SAG	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-57.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90chr2:234249777-234255701"	NA	inter
LNCA_21_P0001322	2.6950545	A	1.9712837	A	1.65149293744622	0	lncRNA	TCONS_00000997	NA	NA	NA	NA	XLOC_000263	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000263), lincRNA [TCONS_00000997]"	chr1:77685245-77685304	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_00000997	TCONS_00000997	chr1	 77685245	 77685304	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16410_PI429285431	0.9006603	A	0.88705444	A	1.00947547422018	0	lncRNA	18107-1_{1..3000}	lnc-PTBP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTBP1-1:1	chr19	   784815	   787814	+	lnc-PTBP1-1	lnc-PTBP1-1:1	XLOC_012908	linc-PTBP1	NA	"hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-56.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60"	NA	inter
LNCA_21_P0001593	3.7036543	P	3.5228422	P	1.13352177061889	0	lncRNA	BC041976	NA	BC041976	NA	Hs.639365	XLOC_001072	NA	NA	THC2612090	NA	"BROAD Institute lincRNA (XLOC_001072), lincRNA [TCONS_00001707]"	chr1:162530322-162530263	hs|1q23.3	Agilent_HUMAN_G3V2	BC041976	BC041976	chr1	162530263	162530322	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009040	0.8839351	A	0.8748127	A	1.00634319925567	0	lncRNA	TCONS_00024673	NA	NA	NA	NA	XLOC_011957	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011957), lincRNA [TCONS_00024673]"	chr16:56110385-56110326	hs|16q12.2	Agilent_HUMAN_G3V2	TCONS_00024673	TCONS_00024673	chr16	 56110326	 56110385	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009503	0.8844358	A	0.87489724	A	1.00663353101897	0	lncRNA	TCONS_00026373	NA	NA	NA	NA	XLOC_012725	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012725), lincRNA [TCONS_00026373]"	chr18:73963371-73963430	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026373	TCONS_00026373	chr18	 73963371	 73963430	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17065_PI429285431	6.93233	P	7.0170617	P	0.942959883171763	0	lncRNA	18774-1_{1..697}	lnc-FOS-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOS-2:4	chr14	 75762823	 75763519	+	lnc-FOS-2	lnc-FOS-2:4	XLOC_010877	linc-JDP2	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.54;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.40"	NA	inter
LNCA_21_P0003595	9.5354	P	7.981903	P	2.93527770017345	0	lncRNA	TCONS_00008036	NA	NA	NA	NA	XLOC_003501	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003501), lincRNA [TCONS_00008036]"	chr4:33522122-33522181	hs|4p15.1	Agilent_HUMAN_G3V2	TCONS_00008036	TCONS_00008036	chr4	 33522122	 33522181	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27225_PI429285431	0.89992774	A	0.9154774	A	0.989279673719892	0	lncRNA	28769-1_{1..913}	n324359|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042482|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042482|-1.1266500|-0.3889787	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324359|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042482|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042482|-1.1266500|-0.3889787	chr6	142495919	142496831	+	NA	NA	NA	NA	VTA1	NA	chr6:142485919-142507981	inner
CUST_49863_PI429285431	1.1034911	A	1.5187633	A	0.749877998316658	0	lncRNA	53615-1_{1..750}	hg19_lincRNAsTranscripts_TCONS_l2_00026017 range=chr7:75796051-75807924 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00026017 range=chr7:75796051-75807924 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 75796051	 75796800	+	NA	NA	NA	NA	SRRM3	NA	chr7:75804786-75817924	inter
CUST_183_PI429285431	2.2916007	A	1.6364839	A	1.57474343856198	0	lncRNA	173-1_{1..650}	"transcript_id ""ENST00000605350.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605350.1"" | genecode_v17"	chr1	 23704873	 23705522	-	ENSG00000271420.1	ENST00000605350.1	RP5-1057J7.7	RP5-1057J7.7-001	TCEA3	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10chr1:23707555-23715522"	NA	inter
CUST_39149_PI429285431	0.92632484	A	0.9182497	A	1.00561295445365	0	lncRNA	40125-1_{1..2109}	n385788|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ecf.1||1.2334600|-0.3602225	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385788|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004ecf.1||1.2334600|-0.3602225	chrX	 74544123	 74546231	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.63;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70"	NA	inter
CUST_17156_PI429285431	0.9073748	A	0.9113841	A	0.997224822952108	0	lncRNA	18865-1_{1..422}	lnc-AL355390.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL355390.1-2:1	chr13	 75306837	 75307258	-	lnc-AL355390.1-2	lnc-AL355390.1-2:1	XLOC_010654	linc-KLF12-2	NA	NA	NA	inter
CUST_2359_PI429285431	1.1108749	A	0.9109021	A	1.14867669809808	0	lncRNA	2352-1_{1..566}	"transcript_id ""ENST00000507428.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000507428.1"" | genecode_v17"	chr5	125515270	125515835	+	ENSG00000248107.1	ENST00000507428.1	CTC-339D2.1	CTC-339D2.1-001	NA	NA	NA	inter
CUST_15754_PI429285431	4.811722	P	5.0154386	P	0.868310780004713	0	lncRNA	17442-1_{1..1757}	lnc-CALM1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CALM1-1:9	chr14	 90924940	 90926696	+	lnc-CALM1-1	lnc-CALM1-1:9	XLOC_010902	linc-C14orf159-3	NA	NA	NA	inter
LNCA_21_P0013705	0.923412	A	3.2743647	P	0.196016539984745	0	lncRNA	ENST00000469756	NA	NA	NA	NA	XLOC_l2_014955	NA	ENST00000469756	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014955), lincRNA [TCONS_l2_00029823]"	chr9:107048897-107048956	hs|9q31.1	Agilent_HUMAN_G3V2	ENST00000469756	ENST00000469756	chr9	107048897	107048956	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002312	3.4763818	P	2.6865053	A	1.72892645381941	0	lncRNA	TCONS_00003930	NA	NA	NA	NA	XLOC_001745	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001745), lincRNA [TCONS_00003930]"	chr2:170961016-170961372	hs|2q31.1	Agilent_HUMAN_G3V2	TCONS_00003930	TCONS_00003930	chr2	170961016	170961372	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007990	1.8604366	A	1.9602114	A	0.933178646317645	0	lncRNA	ENST00000432331	NA	NA	NA	NA	XLOC_010585	NA	ENST00000432331	THC2707563	NA	"BROAD Institute lincRNA (XLOC_010585), lincRNA [TCONS_00021641]"	chr13:44681234-44680541	hs|13q14.11	Agilent_HUMAN_G3V2	ENST00000432331	ENST00000432331	chr13	 44680541	 44681234	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005788	3.3265765	P	3.159928	P	1.12244791416119	0	lncRNA	TCONS_00014913	NA	NA	NA	NA	XLOC_006980	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006980), lincRNA [TCONS_00014913]"	chr8:2532170-2532111	hs|8p23.2	Agilent_HUMAN_G3V2	TCONS_00014913	TCONS_00014913	chr8	  2532111	  2532170	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8326_PI429285431	1.0404761	A	1.5626576	A	0.696318133676272	0	lncRNA	9909-1_{1..146}	lnc-STAP1-6:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STAP1-6:5	chr4	 66563667	 66563812	+	lnc-STAP1-6	lnc-STAP1-6:5	ENSG00000250846	RP11-807H7.1	NA	NA	NA	inter
CUST_16576_PI429285431	0.8981361	A	1.2316741	A	0.793587936341497	0	lncRNA	18277-1_{1..932}	lnc-AC145676.2.1-4:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC145676.2.1-4:11	chr7	   148532	   149463	-	lnc-AC145676.2.1-4	lnc-AC145676.2.1-4:11	XLOC_006326	linc-VIPR2-4	NA	NA	NA	inter
CUST_15065_PI429285431	1.1715325	A	0.9204862	A	1.19006988826694	0	lncRNA	16728-1_{1..732}	lnc-BCKDHB-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-BCKDHB-1:7	chr6	 81175464	 81176195	+	lnc-BCKDHB-1	lnc-BCKDHB-1:7	XLOC_005365	linc-TPBG-3	NA	NA	NA	inter
CUST_28859_PI429285431	1.0594245	A	0.8997617	A	1.11702602592651	0	lncRNA	30567-1_{1..507}	n326274|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086874|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086874|-1.2935500|-0.4049759	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326274|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000086874|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000086874|-1.2935500|-0.4049759	chr1	198709670	198710176	+	NA	NA	NA	NA	PTPRC	NA	chr1:198699670-198724044	inner
LNCA_21_P0012295	0.8835482	A	0.8807998	A	1.00190686146348	0	lncRNA	TCONS_l2_00017992	NA	NA	NA	NA	XLOC_l2_009508	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009508), lincRNA [TCONS_l2_00017992]"	chr22:27042252-27028450	hs|22q12.1	Agilent_HUMAN_G3V2	TCONS_l2_00017992	TCONS_l2_00017992	chr22	 27028450	 27042252	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00802390	7.8609023	P	7.6336207	P	1.17062711417049	0	lncRNA	TCONS_00015178	NA	NA	NA	NA	XLOC_007231	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007231), lincRNA [TCONS_00015178]"	chr11:094646541-094646482	hs|11q21	Agilent_HUMAN_G3V2	TCONS_00015178	TCONS_00015178	chr11	 94646482	 94646541	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0000983	2.0298047	A	0.87604356	A	2.22493183953168	0	lncRNA	ENST00000449140	NA	NA	NA	NA	XLOC_000233	NA	ENST00000449140	NA	NA	"BROAD Institute lincRNA (XLOC_000233), lincRNA [TCONS_00000218]"	chr1:63717339-63717398	hs|1p31.3	Agilent_HUMAN_G3V2	ENST00000449140	ENST00000449140	chr1	 63717339	 63717398	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_927_PI429285431	0.91364473	A	0.91167384	A	1.00136705040938	0	lncRNA	917-1_{1..750}	"transcript_id ""ENST00000447453.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447453.1"" | genecode_v17"	chr2	 67351802	 67352551	-	ENSG00000236780.1	ENST00000447453.1	AC078941.1	AC078941.1-003	NA	NA	NA	inter
CUST_38822_PI429285431	1.6100303	A	1.819757	A	0.864701022268496	0	lncRNA	39816-1_{1..641}	n384611|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jgl.2||1.3227700|-0.3393979	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384611|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jgl.2||1.3227700|-0.3393979	chr5	 22142460	 22143100	+	NA	NA	NA	NA	CDH12	NA	chr5:22132460-22162370	inner
CUST_48347_PI429285431	1.8678999	A	1.3677242	A	1.41438580421701	0	lncRNA	52203-1_{1..331}	hg19_lincRNAsTranscripts_TCONS_l2_00001274 range=chr1:65450881-65451399 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001274 range=chr1:65450881-65451399 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 65450881	 65451211	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32317_PI429285431	10.57885	P	12.328062	P	0.297464209331529	0	lncRNA	34000-1_{1..1889}	n338895|AK096049|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1321|NULL|1.5745800|-0.0882120	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338895|AK096049|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1321|NULL|1.5745800|-0.0882120	chr2	 85978466	 85980354	+	NA	NA	NA	NA	ATOH8	NA	chr2:85980909-86018506	inner
LNCA_21_P0011758	6.5163198	P	6.637785	P	0.919253583137407	0	lncRNA	TCONS_l2_00013180	NA	NA	NA	NA	XLOC_l2_007097	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007097), lincRNA [TCONS_l2_00013180]"	chr19:51289021-51288962	hs|19q13.33	Agilent_HUMAN_G3V2	TCONS_l2_00013180	TCONS_l2_00013180	chr19	 51288962	 51289021	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5234_PI429285431	4.693341	P	4.5002837	P	1.14318373872212	0	lncRNA	5175-1_{1..723}	"transcript_id ""ENST00000562573.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562573.1"" | genecode_v17"	chr15	 72700119	 72700841	-	ENSG00000261423.1	ENST00000562573.1	RP11-1007O24.3	RP11-1007O24.3-002	ARIH1	"hg19_refFlat_TMEM202:range=chr15:72690668-727002345'pad=0,hg19_refFlat_TMEM202:range=chr15:72690668-727002345'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10chr15:72766667-72776550"	NA	inner
CUST_12061_PI429285431	0.9058929	A	1.1515192	A	0.843449559938044	0	lncRNA	13648-1_{1..533}	lnc-SPAG16-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPAG16-4:1	chr2	213682115	213682647	+	lnc-SPAG16-4	lnc-SPAG16-4:1	XLOC_001833	linc-SPAG16-3	NA	NA	NA	inter
CUST_23543_PI429285431	0.9118732	A	0.92026925	A	0.994197203255928	0	lncRNA	25110-1_{1..544}	lnc-AC073348.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC073348.1-1:2	chr7	112786095	112786638	+	lnc-AC073348.1-1	lnc-AC073348.1-1:2	ENSG00000225457.1	RP11-736E3.1	NA	NA	NA	inter
LNCA_21_P0003709	3.5409298	P	4.276462	P	0.600596428117408	0	lncRNA	TCONS_00008407	NA	NA	NA	NA	XLOC_003852	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003852), lincRNA [TCONS_00008407]"	chr4:1553937-1553878	hs|4p16.3	Agilent_HUMAN_G3V2	TCONS_00008407	TCONS_00008407	chr4	  1553878	  1553937	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32901_PI429285431	10.01317	P	10.534325	P	0.696813751176485	0	lncRNA	34526-1_{1..1569}	n339569|AK026099|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2012|NULL|-0.8105090|-0.3397384	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339569|AK026099|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2012|NULL|-0.8105090|-0.3397384	chr20	  6018019	  6019587	-	NA	NA	NA	NA	LRRN4	NA	chr20:6021425-6029573	inner
CUST_26443_PI429285431	1.0568331	A	1.2065438	A	0.901431206215772	0	lncRNA	27951-1_{1..533}	lnc-GAP43-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GAP43-2:1	chr3	115004000	115004532	+	lnc-GAP43-2	lnc-GAP43-2:1	ENSG00000242880.1	RP11-190P13.2	NA	NA	NA	inter
LNCA_21_P0004441	0.9249599	A	1.7707272	A	0.556414800174246	0	lncRNA	TCONS_00010468	NA	NA	NA	NA	XLOC_004988	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004988), lincRNA [TCONS_00010468]"	chr5:126564458-126564399	hs|5q23.2	Agilent_HUMAN_G3V2	TCONS_00010468	TCONS_00010468	chr5	126564399	126564458	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003241	6.1782703	P	6.2688746	P	0.939129294817402	0	lncRNA	TCONS_00006910	NA	NA	NA	NA	XLOC_002727	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002727), lincRNA [TCONS_00006910]"	chr3:88431855-88431914	hs|3p11.1	Agilent_HUMAN_G3V2	TCONS_00006910	TCONS_00006910	chr3	 88431855	 88431914	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3311920	0.9224419	A	0.9711009	A	0.966834594167256	0	lncRNA	XR_112517	XR_112517	XR_112517	100129297	Hs.570655	LOC100129297	uncharacterized LOC100129297	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100129297 (LOC100129297), miscRNA [XR_112517]"	chr3:112538732-112538791	hs|3q13.2	Agilent_HUMAN_G3V2	XR_112517	XR_112517	chr3	112538732	112538791	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42546_PI429285431	5.783251	P	6.239903	P	0.728675303324554	0	lncRNA	45355-1_{1..133}	ENST00000364671 ncrna:snoRNA chromosome:GRCh37:16:24344736:24344868:-1 gene:ENSG00000201541 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364671 ncrna:snoRNA chromosome:GRCh37:16:24344736:24344868:-1 gene:ENSG00000201541 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 24344736	 24344868	-	ENSG00000201541	ENST00000364671	NA	NA	CACNG3	NA	chr16:24334736-24354868	inner
CUST_24532_PI429285431	2.800087	A	2.0344055	A	1.70017293597409	0	lncRNA	26082-1_{1..1044}	lnc-RP11-770G2.3.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-770G2.3.1-2:1	chr11	 65564331	 65565374	-	lnc-RP11-770G2.3.1-2	lnc-RP11-770G2.3.1-2:1	ENSG00000255404.1	RP11-770G2.5	OVOL1	NA	chr11:65554529-65564685	inner
CUST_17443_PI429285431	1.0957788	A	0.90510106	A	1.14129974240762	0	lncRNA	19167-1_{1..922}	lnc-DHX37-10:14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-10:14	chr12	127221212	127222133	-	lnc-DHX37-10	lnc-DHX37-10:14	XLOC_010244	linc-DHX37-4	NA	NA	NA	inter
CUST_25833_PI429285431	0.90455437	A	0.91146606	A	0.995220639229739	0	lncRNA	27354-1_{1..636}	lnc-SGMS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SGMS1-1:1	chr10	 52584231	 52584866	-	lnc-SGMS1-1	lnc-SGMS1-1:1	ENSG00000229711.1	RP11-449O16.2	A1CF	NA	chr10:52574231-52594285	inner
CUST_22165_PI429285431	0.88927925	A	0.88816726	A	1.00077106985495	0	lncRNA	23767-1_{1..519}	lnc-SNTG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNTG1-1:1	chr8	 52233280	 52233798	+	lnc-SNTG1-1	lnc-SNTG1-1:1	ENSG00000253664.1	RP11-401H2.1	PXDNL	"hg19_refFlat_PXDNL:range=chr8:52232451-527219045'pad=0,hg19_refFlat_PXDNL:range=chr8:52232451-527219045'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90chr8:52232137-52243678"	NA	inner
LNCA_21_P0011853	2.8174098	A	3.4271176	P	0.655329417340231	0	lncRNA	XR_109894	XR_109894	XR_109894	NA	Hs.729303	LOC100507460	uncharacterized LOC100507460	NA	THC2508700	NA	"PREDICTED: Homo sapiens hypothetical LOC100507460 (LOC100507460), miscRNA [XR_109894]"	chr2:132443198-132443257	hs|2q21.1	Agilent_HUMAN_G3V2	XR_109894	XR_109894	chr2	132443198	132443257	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0000975	0.8834712	A	0.88010305	A	1.00233735103209	0	lncRNA	ENST00000447150	NA	NA	NA	NA	XLOC_000201	NA	ENST00000447150	THC2734204	NA	"BROAD Institute lincRNA (XLOC_000201), lincRNA [TCONS_00000201]"	chr1:54886474-54886533	hs|1p32.3	Agilent_HUMAN_G3V2	ENST00000447150	ENST00000447150	chr1	 54886474	 54886533	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11753_PI429285431	4.714405	P	4.7201405	P	0.996032346365697	0	lncRNA	13333-1_{1..1727}	lnc-EXOC2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXOC2-2:1	chr6	   780002	   781728	-	lnc-EXOC2-2	lnc-EXOC2-2:1	XLOC_005570	linc-HUS1B-8	NA	NA	NA	inter
CUST_18867_PI429285431	3.754288	P	4.178037	P	0.745484881534256	0	lncRNA	20560-1_{1..556}	lnc-ARHGEF35-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ARHGEF35-1:12	chr7	144052075	144052630	-	lnc-ARHGEF35-1	lnc-ARHGEF35-1:12	ENSG00000244479	RP4-798C17.6	ARHGEF5	"hg19_refFlat_OR2A14:range=chr7:143826206-1438271385'pad=0,hg19_refFlat_OR2A14:range=chr7:143826206-1438271385'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.20;hg19_refFlat_OR2A25:range=chr7:143771313-1437722455'pad=0,hg19_refFlat_OR2A25:range=chr7:143771313-1437722455'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_OR2A5:range=chr7:143747495-1437484305'pad=0,hg19_refFlat_OR2A5:range=chr7:143747495-1437484305'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.20;hg19_refFlat_OR2A42:range=chr7:143929004-1439299365'pad=0,hg19_refFlat_OR2A42:range=chr7:143929004-1439299365'pad=0 3'pad=0 strand=- repeatMasking=none,-99.10;hg19_refFlat_OR8I2:range=chr11:55860784-558617165'pad=0,hg19_refFlat_OR8I2:range=chr11:55860784-558617165'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_OR2A1:range=chr7:144015218-1440161505'pad=0,hg19_refFlat_OR2A1:range=chr7:144015218-1440161505'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10;hg19_refFlat_OR2A1:range=chr7:143929004-1439299365'pad=0,hg19_refFlat_OR2A1:range=chr7:143929004-1439299365'pad=0 3'pad=0 strand=- repeatMasking=none,-99.10;hg19_refFlat_OR2A42:range=chr7:144015218-1440161505'pad=0,hg19_refFlat_OR2A42:range=chr7:144015218-1440161505'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.10;hg19_refFlat_OR2A12:range=chr7:143792201-1437931335'pad=0,hg19_refFlat_OR2A12:range=chr7:143792201-1437931335'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.90chr7:144052489-144062244"	NA	inter
LNCA_21_P0005941	7.143788	P	7.3549495	P	0.863841480747725	0	lncRNA	TCONS_00015306	NA	NA	NA	NA	XLOC_006844	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006844), lincRNA [TCONS_00015306]"	chr8:74794372-74796901	hs|8q21.11	Agilent_HUMAN_G3V2	TCONS_00015306	TCONS_00015306	chr8	 74794372	 74796901	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005497	3.228623	P	3.4560084	P	0.854181525275414	0	lncRNA	TCONS_00013800	NA	NA	NA	NA	XLOC_006441	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006441), lincRNA [TCONS_00013800]"	chr7:50518279-50518220	hs|7p12.1	Agilent_HUMAN_G3V2	TCONS_00013800	TCONS_00013800	chr7	 50518220	 50518279	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48585_PI429285431	5.4675684	P	5.7921677	P	0.798520139797669	0	lncRNA	52433-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00014463 range=chr2:20786003-20793177 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014463 range=chr2:20786003-20793177 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 20786003	 20789002	-	NA	NA	NA	NA	HS1BP3	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30chr2:20776003-20803177"	NA	inter
LNCA_21_P0002018	1.3214206	A	0.87496597	A	1.36268738453446	0	lncRNA	ENST00000416173	NA	NA	NA	NA	XLOC_001993	NA	ENST00000416173	NA	NA	"BROAD Institute lincRNA (XLOC_001993), lincRNA [TCONS_00003209]"	chr2:15026830-15026771	hs|2p24.3	Agilent_HUMAN_G3V2	ENST00000416173	ENST00000416173	chr2	 15026771	 15026830	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1387_PI429285431	0.8865715	A	0.8765372	A	1.00697949065745	0	lncRNA	1376-1_{1..576}	"transcript_id ""ENST00000484679.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000484679.1"" | genecode_v17"	chr3	 78316090	 78316665	+	ENSG00000240241.1	ENST00000484679.1	RP11-314M24.1	RP11-314M24.1-002	NA	NA	NA	inter
CUST_45279_PI429285431	0.8977969	A	0.8933343	A	1.00309802760708	0	lncRNA	49727-1_{1..1058}	"gi|211971043|ref|NR_024378.1| Homo sapiens long intergenic non-protein coding RNA 51 (LINC00051), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|211971043|ref|NR_024378.1| Homo sapiens long intergenic non-protein coding RNA 51 (LINC00051), non-coding RNA"	Chr8	143279717	143280774	+	619434	NR_024378.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003236	2.751488	A	3.870148	P	0.460521366904361	0	lncRNA	TCONS_00006104	NA	NA	NA	NA	XLOC_002716	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002716), lincRNA [TCONS_00006104]"	chr3:80820613-80837998	hs|3p12.2	Agilent_HUMAN_G3V2	TCONS_00006104	TCONS_00006104	chr3	 80820613	 80837998	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19916_PI429285431	3.023023	A	4.0177393	P	0.501834548236388	0	lncRNA	21571-1_{1..670}	lnc-SNX11-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNX11-2:1	chr17	 46384693	 46385362	+	lnc-SNX11-2	lnc-SNX11-2:1	ENSG00000235300.2	AC090627.1	SKAP1	NA	chr17:46374693-46395191	inner
CUST_29960_PI429285431	5.5961685	P	5.755076	P	0.895703097251901	0	lncRNA	31726-1_{1..569}	n334166|M97724|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196987|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196987|1.2818500|-0.2885220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334166|M97724|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196987|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196987|1.2818500|-0.2885220	chr14	 22788449	 22789017	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013872	0.8862896	A	0.922233	A	0.975393727550938	0	lncRNA	ENST00000444691	NA	NA	NA	NA	XLOC_l2_015828	NA	ENST00000444691	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015828), lincRNA [TCONS_l2_00030864]"	chrX:134812445-134812386	hs|Xq26.3	Agilent_HUMAN_G3V2	ENST00000444691	ENST00000444691	chrX	134812386	134812445	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001162	0.8861727	A	0.8780016	A	1.00567984442397	0	lncRNA	ENST00000447916	NA	NA	NA	NA	XLOC_000943	NA	ENST00000447916	NA	NA	"BROAD Institute lincRNA (XLOC_000943), lincRNA [TCONS_00001612]"	chr1:102852948-102852779	hs|1p21.1	Agilent_HUMAN_G3V2	ENST00000447916	ENST00000447916	chr1	102852779	102852948	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48934_PI429285431	0.8995042	A	1.623383	A	0.605467404815345	0	lncRNA	52776-1_{1..321}	hg19_lincRNAsTranscripts_TCONS_l2_00020217 range=chr3:148947232-148959226 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020217 range=chr3:148947232-148959226 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	148947232	148947552	-	NA	NA	NA	NA	CP	NA	chr3:148937232-148939832	inter
LNCA_21_P0007350	1.4936453	A	1.3494736	A	1.10509599817374	0	lncRNA	ENST00000531982	NA	NA	NA	NA	XLOC_009434	NA	ENST00000531982	NA	NA	"BROAD Institute lincRNA (XLOC_009434), lincRNA [TCONS_00019633]"	chr11:45772454-45772395	hs|11p11.2	Agilent_HUMAN_G3V2	ENST00000531982	ENST00000531982	chr11	 45772395	 45772454	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21176_PI429285431	4.0250797	P	4.704484	P	0.624423050360975	0	lncRNA	22801-1_{1..741}	lnc-AGPS-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGPS-3:1	chr2	178587817	178588557	+	lnc-AGPS-3	lnc-AGPS-3:1	ENSG00000229941.1	AC012499.1	PDE11A	"hg19_refFlat_PDE11A:range=chr2:178494135-1787699115'pad=0,hg19_refFlat_PDE11A:range=chr2:178494135-1787699115'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_PDE11A:range=chr2:178494135-1787406205'pad=0,hg19_refFlat_PDE11A:range=chr2:178494135-1787406205'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_PDE11A:range=chr2:178494135-1789691905'pad=0,hg19_refFlat_PDE11A:range=chr2:178494135-1789691905'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_PDE11A:range=chr2:178494135-1789371645'pad=0,hg19_refFlat_PDE11A:range=chr2:178494135-1789371645'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70chr2:178577817-178598017"	NA	inner
CUST_30237_PI429285431	6.1556063	P	5.7581244	P	1.31720683205558	0	lncRNA	32012-1_{1..271}	n335106|AL355718|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250367|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250367|0.0599830|-0.2998037	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335106|AL355718|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250367|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250367|0.0599830|-0.2998037	chr5	 44809945	 44810215	+	NA	NA	NA	NA	MRPS30	NA	chr5:44809027-44815616	inner
CUST_44213_PI429285431	2.618495	A	1.9150175	A	1.62842525352996	0	lncRNA	48866-1_{1..3000}	"gi|209977063|ref|NR_024265.1| Homo sapiens protein O-glucosyltransferase 1 (POGLUT1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209977063|ref|NR_024265.1| Homo sapiens protein O-glucosyltransferase 1 (POGLUT1), transcript variant 2, non-coding RNA"	Chr3	119187785	119190784	+	56983	NR_024265.1	NA	NA	NA	NA	NA	inter
CUST_21977_PI429285431	0.91707784	A	0.9272946	A	0.992943297891626	0	lncRNA	23585-1_{1..454}	lnc-RP11-366L20.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-366L20.2.1-1:1	chr12	 66342215	 66342668	-	lnc-RP11-366L20.2.1-1	lnc-RP11-366L20.2.1-1:1	ENSG00000256083.1	RP11-366L20.3	HMGA2	NA	chr12:66332215-66352259	inner
LNCA_21_P0014725	7.1311097	P	6.9152	P	1.16143603398667	0	lncRNA	XR_112823	XR_112823	XR_112823	NA	Hs.573270	LOC100506631	uncharacterized LOC100506631	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506631 (LOC100506631), miscRNA [XR_112823]"	chr6:14212198-14212257	hs|6p23	Agilent_HUMAN_G3V2	XR_112823	XR_112823	chr6	 14212198	 14212257	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010044	4.939741	P	5.3223605	P	0.767043605160797	0	lncRNA	TCONS_00028410	NA	NA	NA	NA	XLOC_013763	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013763), lincRNA [TCONS_00028410]"	chr20:44544361-44543295	hs|20q13.12	Agilent_HUMAN_G3V2	TCONS_00028410	TCONS_00028410	chr20	 44543295	 44544361	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014485	0.9201488	A	0.96074855	A	0.972250684174843	0	lncRNA	XR_110042	XR_110042	XR_110042	NA	NA	LOC100505801	uncharacterized LOC100505801	NA	THC2630661	NA	"PREDICTED: Homo sapiens hypothetical LOC100505801 (LOC100505801), miscRNA [XR_110042]"	chr3:18243683-18243624	hs|3p24.3	Agilent_HUMAN_G3V2	XR_110042	XR_110042	chr3	 18243624	 18243683	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47566_PI429285431	5.878381	P	4.9247465	P	1.93674565089683	0	lncRNA	51571-2_{3001..3153}	"gi|298231174|ref|NR_033717.1| Homo sapiens sex comb on midleg-like 2 (Drosophila) (SCML2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|298231174|ref|NR_033717.1| Homo sapiens sex comb on midleg-like 2 (Drosophila) (SCML2), transcript variant 2, non-coding RNA"	ChrX	 18260433	 18260585	-	10389	NR_033717.1	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20"	NA	inter
LNCA_21_P0007146	0.91776365	A	0.94648486	A	0.9802888305065	0	lncRNA	TCONS_00019149	NA	NA	NA	NA	XLOC_009180	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009180), lincRNA [TCONS_00019149]"	chr11:67550371-67550430	hs|11q13.2	Agilent_HUMAN_G3V2	TCONS_00019149	TCONS_00019149	chr11	 67550371	 67550430	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00320343	6.8280325	P	6.859102	P	0.978694501898029	0	lncRNA	ENST00000523946	XR_133480	XR_133480	NA	Hs.532031	XLOC_007052	0	ENST00000523946	THC2500167	NA	"PREDICTED: Homo sapiens hypothetical LOC100507403 (LOC100507403), miscRNA [XR_133480]"	chr8:37184595-37184536	hs|8p11.23	Agilent_HUMAN_G3V2	ENST00000523946	ENST00000523946	chr8	 37184536	 37184595	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19518_PI429285431	0.9006998	A	2.2051256	A	0.404882221403156	0	lncRNA	21174-1_{1..494}	lnc-KLHL25-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL25-1:3	chr15	 86295995	 86296488	-	lnc-KLHL25-1	lnc-KLHL25-1:3	ENSG00000259762.1	RP11-158M2.4	AKAP13	NA	chr15:86285995-86292586	inter
LNCA_21_P0001315	0.9141897	A	0.9297738	A	0.989256057928382	0	lncRNA	TCONS_00000973	NA	NA	NA	NA	XLOC_000238	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000238), lincRNA [TCONS_00000973]"	chr1:68441135-68441194	hs|1p31.3	Agilent_HUMAN_G3V2	TCONS_00000973	TCONS_00000973	chr1	 68441135	 68441194	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33744_PI429285431	0.9162169	A	0.920082	A	0.997324502373025	0	lncRNA	35301-1_{1..3000}	n340522|AL353949|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2984|NULL|-1.1403200|-0.2969172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340522|AL353949|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2984|NULL|-1.1403200|-0.2969172	chr5	 77044989	 77047988	-	NA	NA	NA	NA	TBCA	"hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90chr5:77034989-77058014"	NA	inner
LNCA_21_P0005514	1.571167	A	2.5674212	A	0.501299882125172	0	lncRNA	TCONS_00013888	NA	NA	NA	NA	XLOC_006525	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006525), lincRNA [TCONS_00013888]"	chr7:94020734-93936920	hs|7q21.3	Agilent_HUMAN_G3V2	TCONS_00013888	TCONS_00013888	chr7	 93936920	 94020734	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007063	2.9699779	P	3.1094754	P	0.907835305155245	0	lncRNA	TCONS_00018738	NA	NA	NA	NA	XLOC_008489	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008489), lincRNA [TCONS_00018738]"	chr10:60782391-60782450	hs|10q21.1	Agilent_HUMAN_G3V2	TCONS_00018738	TCONS_00018738	chr10	 60782391	 60782450	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23399_PI429285431	7.692844	P	7.164991	P	1.44178195701212	0	lncRNA	24967-1_{1..546}	lnc-MANBA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MANBA-1:1	chr4	103371088	103371633	-	lnc-MANBA-1	lnc-MANBA-1:1	ENSG00000248161.1	RP11-499E18.1	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_8342_PI429285431	1.0310625	A	0.88681006	A	1.1051578462741	0	lncRNA	9923-1_{1..701}	lnc-SPATA13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPATA13-1:1	chr13	 24608060	 24608760	+	lnc-SPATA13-1	lnc-SPATA13-1:1	ENSG00000228741	RP11-309I15.1	NA	NA	NA	inter
CUST_37109_PI429285431	1.5044725	A	1.3507593	A	1.11242895372062	0	lncRNA	38234-1_{1..367}	n345552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1101|NULL|-1.3095000|-0.5018018	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345552|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1101|NULL|-1.3095000|-0.5018018	chr2	174911288	174911654	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51407_PI429285431	7.370438	P	7.4138618	P	0.970349382163635	0	lncRNA	54988-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00009916 range=chr16:75602-87928 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009916 range=chr16:75602-87928 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	    75602	    78601	-	NA	NA	NA	NA	POLR3K	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-62.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90chr16:96979-97928"	NA	inter
LNCA_21_P0008030	5.9068003	P	5.9544163	P	0.967533822387153	0	lncRNA	TCONS_00021720	NA	NA	NA	NA	XLOC_010305	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010305), lincRNA [TCONS_00021720]"	chr13:23507389-23507448	hs|13q12.12	Agilent_HUMAN_G3V2	TCONS_00021720	TCONS_00021720	chr13	 23507389	 23507448	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014868	2.0110955	A	2.266996	A	0.837464243871685	0	lncRNA	ENST00000422014	XR_132762	XR_132762	NA	Hs.433218	LOC100508046	NA	ENST00000422014	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100508046 (LOC100508046), miscRNA [XR_132762]"	chr22:16278543-16278602	hs|22q11.1	Agilent_HUMAN_G3V2	ENST00000422014	ENST00000422014	chr22	 16278543	 16278602	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3267_PI429285431	8.484429	P	8.45754	P	1.01881280681921	0	lncRNA	3245-1_{1..544}	"transcript_id ""ENST00000523557.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000523557.1"" | genecode_v17"	chr8	111995179	111995722	-	ENSG00000253877.1	ENST00000523557.1	RP11-946L20.2	RP11-946L20.2-002	NA	NA	NA	inter
LNCA_21_P0010226	8.427187	P	8.852398	P	0.74472980384222	0	lncRNA	TCONS_00028982	NA	NA	NA	NA	XLOC_013896	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013896), lincRNA [TCONS_00028982]"	chr21:29047029-29047088	hs|21q21.3	Agilent_HUMAN_G3V2	TCONS_00028982	TCONS_00028982	chr21	 29047029	 29047088	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25434_PI429285431	6.530044	P	6.6459904	P	0.922776775655392	0	lncRNA	26964-1_{1..698}	lnc-LRRC49-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-LRRC49-2:1	chr15	 71640491	 71641188	+	lnc-LRRC49-2	lnc-LRRC49-2:1	ENSG00000260586.1	RP11-592N21.2	THSD4	NA	chr15:71630491-71650810	inner
CUST_6655_PI429285431	3.6434166	P	3.389123	P	1.19275158213664	0	lncRNA	6601-1_{1..415}	"transcript_id ""ENST00000412571.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412571.1"" | genecode_v17"	chr20	 19738792	 19739206	+	ENSG00000233895.1	ENST00000412571.1	RP1-122P22.2	RP1-122P22.2-002	NA	NA	NA	inter
LNCA_21_P0012559	4.747601	P	5.1399117	P	0.761908312294096	0	lncRNA	BC050282	NA	BC050282	NA	Hs.507129	XLOC_l2_010463	NA	ENST00000457449	THC2648194	NA	"BROAD Institute lincRNA (XLOC_l2_010463), lincRNA [TCONS_l2_00020288]"	chr3:184474241-184474182	hs|3q27.1	Agilent_HUMAN_G3V2	BC050282	BC050282	chr3	184474182	184474241	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48372_PI429285431	0.8881804	A	0.8810959	A	1.00492267796271	0	lncRNA	52225-1_{1..952}	hg19_lincRNAsTranscripts_TCONS_l2_00001386 range=chr1:95099372-95145877 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001386 range=chr1:95099372-95145877 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 95099372	 95100323	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26087_PI429285431	5.006165	P	4.718349	P	1.22079080420235	0	lncRNA	27600-1_{1..630}	lnc-CYTH4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYTH4-1:1	chr22	 37578469	 37579098	+	lnc-CYTH4-1	lnc-CYTH4-1:1	ENSG00000235237.1	RP1-151B14.6	C1QTNF6	"hg19_refFlat_C1QTNF6:range=chr22:37578228-375842535'pad=0,hg19_refFlat_C1QTNF6:range=chr22:37578228-375842535'pad=0 3'pad=0 strand=- repeatMasking=none,-104.70chr22:37576206-37584330"	NA	inner
CUST_45632_PI429285431	1.8190012	A	2.0927186	A	0.827185384454559	0	lncRNA	50015-1_{1..2254}	"gi|212549570|ref|NR_024429.1| Homo sapiens uncharacterized LOC283050 (LOC283050), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|212549570|ref|NR_024429.1| Homo sapiens uncharacterized LOC283050 (LOC283050), transcript variant 2, non-coding RNA"	Chr10	 80703083	 80705336	-	283050	NR_024429.1	NA	NA	NA	NA	NA	inter
CUST_7652_PI429285431	2.1290047	A	2.4776373	A	0.785328086646832	0	lncRNA	9284-1_{1..673}	lnc-AMIGO2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AMIGO2-1:6	chr12	 47610167	 47610839	-	lnc-AMIGO2-1	lnc-AMIGO2-1:6	ENSG00000247774	RP11-493L12.2	FAM113B	NA	chr12:47610052-47620191	inner
CUST_47325_PI429285431	6.920406	P	7.3397512	P	0.747763937001507	0	lncRNA	51382-1_{1..1784}	"gi|397139738|ref|XR_158947.1| PREDICTED: Homo sapiens uncharacterized LOC100652930 (LOC100652930), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139738|ref|XR_158947.1| PREDICTED: Homo sapiens uncharacterized LOC100652930 (LOC100652930), misc_RNA"	Chr20	 57292420	 57294203	+	100652930	XR_158947.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002313	3.4082584	P	3.0874288	A	1.24904858896447	0	lncRNA	THC2711871	NA	NA	NA	NA	XLOC_001748	NA	NA	THC2711871	NA	"BROAD Institute lincRNA (XLOC_001748), lincRNA [TCONS_00003932]"	chr2:171634855-171634914	hs|2q31.1	Agilent_HUMAN_G3V2	THC2711871	THC2711871	chr2	171634855	171634914	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004225	0.923108	A	0.9736516	A	0.965572437692342	0	lncRNA	TCONS_00009868	NA	NA	NA	NA	XLOC_004285	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004285), lincRNA [TCONS_00009868]"	chr5:8580380-8580439	hs|5p15.31	Agilent_HUMAN_G3V2	TCONS_00009868	TCONS_00009868	chr5	  8580380	  8580439	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20250_PI429285431	0.9550493	A	0.999508	A	0.969653563260394	0	lncRNA	21893-1_{1..548}	lnc-MAT2B-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAT2B-3:8	chr5	164598384	164598931	+	lnc-MAT2B-3	lnc-MAT2B-3:8	ENSG00000241956.5	CTC-340A15.2	NA	NA	NA	inter
CUST_33318_PI429285431	0.9172231	A	0.9244682	A	0.994990668123502	0	lncRNA	34901-1_{1..1281}	n340035|BC065728|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2490|NULL|-0.9696940|-0.3678569	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340035|BC065728|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2490|NULL|-0.9696940|-0.3678569	chr10	 59960594	 59961874	-	NA	NA	NA	NA	IPMK	NA	chr10:59951278-59971847	inner
LNCA_21_P0014703	8.070301	P	8.366398	P	0.814452801269973	0	lncRNA	XR_112081	XR_112081	XR_112081	NA	Hs.729526	LOC100506327	uncharacterized LOC100506327	NA	THC2560432	NA	"PREDICTED: Homo sapiens hypothetical LOC100506327 (LOC100506327), miscRNA [XR_112081]"	chr1:778840-778899	hs|1p36.33	Agilent_HUMAN_G3V2	XR_112081	XR_112081	chr1	   778840	   778899	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006321	1.9833361	A	2.2350225	A	0.839914046021547	0	lncRNA	TCONS_00016480	NA	NA	NA	NA	XLOC_007858	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007858), lincRNA [TCONS_00016480]"	chr9:130875259-130875200	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_00016480	TCONS_00016480	chr9	130875200	130875259	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8886_PI429285431	1.0297803	A	1.5233605	A	0.710260323017292	0	lncRNA	10423-1_{1..1790}	lnc-CMTM3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CMTM3-1:1	chr16	 66764993	 66766782	+	lnc-CMTM3-1	lnc-CMTM3-1:1	ENSG00000246901	ENSG00000260465.1	DYNC1LI2	NA	chr16:66754993-66775688	inner
LNCA_21_P0005901	2.2520738	A	3.0730996	P	0.566039328371859	0	lncRNA	ENST00000518339	NA	NA	NA	NA	XLOC_007208	NA	ENST00000518339	THC2647276	NA	"BROAD Institute lincRNA (XLOC_007208), lincRNA [TCONS_00015163]"	chr8:126761525-126761466	hs|8q24.13	Agilent_HUMAN_G3V2	ENST00000518339	ENST00000518339	chr8	126761466	126761525	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003017	0.8947483	A	0.90359044	A	0.993889839011759	0	lncRNA	TCONS_00006172	NA	NA	NA	NA	XLOC_002779	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002779), lincRNA [TCONS_00006172]"	chr3:119824011-119824070	hs|3q13.33	Agilent_HUMAN_G3V2	TCONS_00006172	TCONS_00006172	chr3	119824011	119824070	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5432_PI429285431	0.9133771	A	1.7094862	A	0.575900268591988	0	lncRNA	5366-1_{1..1001}	"transcript_id ""ENST00000573369.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000573369.1"" | genecode_v17"	chr16	 13823994	 13824994	-	ENSG00000262267.1	ENST00000573369.1	U95743.1	U95743.1-001	NA	NA	NA	inter
CUST_7927_PI429285431	2.430562	A	2.1719177	A	1.19635396286252	0	lncRNA	9539-1_{1..2043}	lnc-C20orf197-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-C20orf197-3:8	chr20	 58895691	 58897733	+	lnc-C20orf197-3	lnc-C20orf197-3:8	ENSG00000228340	RP5-1043L13.1	NA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30"	NA	inter
CUST_30546_PI429285431	12.91787	P	12.847547	P	1.04995172736921	0	lncRNA	32327-1_{1..339}	n335722|CR626057|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000305252|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000305252|-1.0620300|-0.2703448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335722|CR626057|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000305252|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000305252|-1.0620300|-0.2703448	chrX	134184962	134185300	-	NA	NA	NA	NA	FAM127B	NA	chrX:134184962-134186221	inner
LNCA_21_P0005695	5.71007	P	5.7903333	P	0.945885001612177	0	lncRNA	TCONS_00014696	NA	NA	NA	NA	XLOC_006793	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006793), lincRNA [TCONS_00014696]"	chr8:50105753-50105812	hs|8q11.21	Agilent_HUMAN_G3V2	TCONS_00014696	TCONS_00014696	chr8	 50105753	 50105812	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47073_PI429285431	5.6693945	P	5.4059424	P	1.20034747853955	0	lncRNA	51158-1_{1..3000}	"gi|341604759|ref|NR_040546.1| Homo sapiens phosphodiesterase 4C, cAMP-specific (PDE4C), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|341604759|ref|NR_040546.1| Homo sapiens phosphodiesterase 4C, cAMP-specific (PDE4C), transcript variant 4, non-coding RNA"	Chr19	 18318771	 18321770	-	5143	NR_040546.1	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.70;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40"	NA	inter
CUST_7715_PI429285431	3.512101	P	3.993099	P	0.716481818440566	0	lncRNA	9346-2_{3001..3697}	lnc-DDX27-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DDX27-3:1	chr20	 47792764	 47793460	+	lnc-DDX27-3	lnc-DDX27-3:1	ENSG00000247609	ENST00000501864	STAU1	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10chr20:47779764-47800864"	NA	inner
LNCA_21_P0004831	0.8862119	A	0.8882443	A	0.998592239495993	0	lncRNA	TCONS_00011673	NA	NA	NA	NA	XLOC_005155	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005155), lincRNA [TCONS_00011673]"	chr6:7430309-7430368	hs|6p24.3	Agilent_HUMAN_G3V2	TCONS_00011673	TCONS_00011673	chr6	  7430309	  7430368	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003214	7.9570165	P	8.054201	P	0.934855635481369	0	lncRNA	TCONS_00006777	NA	NA	NA	NA	XLOC_002563	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002563), lincRNA [TCONS_00006777]"	chr3:109185-109357	hs|3p26.3	Agilent_HUMAN_G3V2	TCONS_00006777	TCONS_00006777	chr3	   109185	   109357	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4064_PI429285431	5.914312	P	6.438824	P	0.695194223649672	0	lncRNA	4026-1_{1..562}	"transcript_id ""ENST00000533459.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533459.1"" | genecode_v17"	chr11	103546722	103547283	-	ENSG00000254987.1	ENST00000533459.1	RP11-563P16.1	RP11-563P16.1-001	NA	NA	NA	inter
CUST_4256_PI429285431	1.2116963	A	0.8843941	A	1.25466499051598	0	lncRNA	4213-1_{1..617}	"transcript_id ""ENST00000549734.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000549734.1"" | genecode_v17"	chr12	 50305763	 50306379	+	ENSG00000257771.1	ENST00000549734.1	RP11-70F11.8	RP11-70F11.8-005	FAIM2	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40chr12:50295763-50297760"	NA	inter
CUST_8874_PI429285431	2.170706	A	2.6607745	A	0.711991291235171	0	lncRNA	10411-1_{1..543}	lnc-DBN1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DBN1-2:3	chr5	176871397	176871939	-	lnc-DBN1-2	lnc-DBN1-2:3	ENSG00000246334	RP11-1334A24.4	PRR7	NA	chr5:176873796-176881581	inter
CUST_38486_PI429285431	4.557534	P	5.0991454	P	0.687003140896065	0	lncRNA	39503-1_{1..408}	n382996|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ejo.1||0.2935260|-0.1537634	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382996|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ejo.1||0.2935260|-0.1537634	chr16	 56669650	 56670057	+	NA	NA	NA	NA	MT1A	NA	chr16:56672578-56673999	inter
LNCA_21_P0007529	4.1609344	P	2.6310956	A	2.88753573327412	0	lncRNA	TCONS_00020349	NA	NA	NA	NA	XLOC_009680	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009680), lincRNA [TCONS_00020349]"	chr12:18952672-18952731	hs|12p12.3	Agilent_HUMAN_G3V2	TCONS_00020349	TCONS_00020349	chr12	 18952672	 18952731	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48785_PI429285431	8.385305	P	8.358994	P	1.01840471235816	0	lncRNA	52623-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00014219 range=chr2:213692663-213699821 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014219 range=chr2:213692663-213699821 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	213692663	213695662	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_537_PI429285431	0.9109818	A	0.90992045	A	1.00073594243293	0	lncRNA	529-1_{1..917}	"transcript_id ""ENST00000440162.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000440162.1"" | genecode_v17"	chr1	198952753	198953669	+	ENSG00000225172.1	ENST00000440162.1	RP11-16L9.2	RP11-16L9.2-002	NA	NA	NA	inter
LNCA_21_P0004127	0.94562984	A	0.87523973	A	1.05000056922235	0	lncRNA	ENST00000510349	NA	NA	NA	NA	XLOC_004815	NA	ENST00000510349	NA	NA	"BROAD Institute lincRNA (XLOC_004815), lincRNA [TCONS_00009660]"	chr5:50261614-50261555	hs|5q11.1	Agilent_HUMAN_G3V2	ENST00000510349	ENST00000510349	chr5	 50261555	 50261614	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8501_PI429285431	1.011869	A	0.8895896	A	1.08845321690322	0	lncRNA	10064-1_{1..2159}	lnc-C14orf1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C14orf1-1:1	chr14	 76044120	 76046278	-	lnc-C14orf1-1	lnc-C14orf1-1:1	ENSG00000224721	FLVCR2	FLVCR2	"hg19_refFlat_FLVCR2:range=chr14:76045316-761128155'pad=0,hg19_refFlat_FLVCR2:range=chr14:76045316-761128155'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.50chr14:76044940-76055931"	NA	inner
CUST_24427_PI429285431	1.104432	A	2.172784	A	0.476863412220321	0	lncRNA	25980-1_{1..373}	lnc-CHD1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHD1-1:5	chr5	 98108326	 98108698	-	lnc-CHD1-1	lnc-CHD1-1:5	ENSG00000246763.2	CTC-463N11.3	RGMB	NA	chr5:98098326-98118482	inter
CUST_12068_PI429285431	0.8949525	A	0.8816417	A	1.00926903739998	0	lncRNA	13658-1_{1..572}	lnc-YOD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-YOD1-1:1	chr1	207589397	207589968	-	lnc-YOD1-1	lnc-YOD1-1:1	XLOC_001178	linc-YOD1-5	NA	NA	NA	inter
CUST_17607_PI429285431	0.8974072	A	0.8996457	A	0.998449593160716	0	lncRNA	19330-4_{9001..11868}	lnc-SOX11-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SOX11-3:2	chr2	  6117718	  6120585	+	lnc-SOX11-3	lnc-SOX11-3:2	XLOC_001327	linc-RSAD2-2	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-58.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.50;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00"	NA	inter
CUST_7074_PI429285431	2.608764	A	2.8468468	A	0.847871301709649	0	lncRNA	7017-3_{6001..9000}	"transcript_id ""ENST00000604411.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000604411.1"" | genecode_v17"	chrX	 73018040	 73021039	+	ENSG00000270641.1	ENST00000604411.1	TSIX	TSIX-001	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-25.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_1126_PI429285431	0.89177847	A	0.8894654	A	1.00160458391827	0	lncRNA	1115-1_{1..407}	"transcript_id ""ENST00000418416.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418416.1"" | genecode_v17"	chr2	146358475	146358881	-	ENSG00000226218.1	ENST00000418416.1	AC079163.1	AC079163.1-001	NA	NA	NA	inter
LNCA_21_P0012688	1.4603459	A	0.94940346	A	1.42498075977106	0	lncRNA	TCONS_l2_00021339	NA	NA	NA	NA	XLOC_l2_011302	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011302), lincRNA [TCONS_l2_00021339]"	chr4:147030445-147030386	hs|4q31.22	Agilent_HUMAN_G3V2	TCONS_l2_00021339	TCONS_l2_00021339	chr4	147030386	147030445	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009304	0.9259898	A	0.96928215	A	0.970437798796233	0	lncRNA	TCONS_00025579	NA	NA	NA	NA	XLOC_012406	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012406), lincRNA [TCONS_00025579]"	chr17:16944569-16937334	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_00025579	TCONS_00025579	chr17	 16937334	 16944569	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24016_PI429285431	3.1742997	A	2.5358946	A	1.55660737764295	0	lncRNA	25570-1_{1..533}	lnc-SLC7A6OS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SLC7A6OS-1:1	chr16	 68271056	 68271588	-	lnc-SLC7A6OS-1	lnc-SLC7A6OS-1:1	ENSG00000261469.1	RP11-96D1.6	NFATC3	NA	chr16:68261056-68263162	inter
CUST_21955_PI429285431	0.90626425	A	1.5829875	A	0.625584533478745	0	lncRNA	23563-1_{1..555}	lnc-SLC16A3-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC16A3-5:1	chr17	 80112614	 80113168	+	lnc-SLC16A3-5	lnc-SLC16A3-5:1	ENSG00000265678.1	RP11-1376P16.2	CCDC57	NA	chr17:80102614-80122691	inner
CUST_17394_PI429285431	0.91188425	A	0.9132497	A	0.999053989932235	0	lncRNA	19116-2_{3001..3602}	lnc-LPHN3-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LPHN3-2:5	chr4	 63013852	 63014453	+	lnc-LPHN3-2	lnc-LPHN3-2:5	XLOC_003555	linc-STAP1-9	NA	NA	NA	inter
LNCA_21_P0010969	0.9209382	A	0.96455896	A	0.970216916907002	0	lncRNA	TCONS_l2_00004468	NA	NA	NA	NA	XLOC_l2_002276	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002276), lincRNA [TCONS_l2_00004468]"	chr11:32522078-32522137	hs|11p13	Agilent_HUMAN_G3V2	TCONS_l2_00004468	TCONS_l2_00004468	chr11	 32522078	 32522137	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15873_PI429285431	1.0619817	A	0.9186187	A	1.1044767122701	0	lncRNA	17563-1_{1..430}	lnc-CCND2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCND2-1:1	chr12	  4322182	  4322611	+	lnc-CCND2-1	lnc-CCND2-1:1	XLOC_009624	linc-CCND2	NA	NA	NA	inter
CUST_29988_PI429285431	0.9126361	A	1.353028	A	0.736934397366129	0	lncRNA	31754-1_{1..204}	n334290|S69791|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216347_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216347_03|-0.9682330|-0.1729918	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334290|S69791|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216347_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216347_03|-0.9682330|-0.1729918	chr10	 81319170	 81319373	-	NA	NA	NA	NA	SFTPA2	NA	chr10:81315608-81320163	inner
CUST_38245_PI429285431	3.5265996	P	3.183062	P	1.26886413560108	0	lncRNA	39305-1_{1..3000}	n381749|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pcd.2||0.3573550|-0.3043259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381749|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001pcd.2||0.3573550|-0.3043259	chr11	 86534418	 86537417	+	NA	NA	NA	NA	FZD4	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.80;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60chr11:86656717-86658860"	NA	inter
CUST_37965_PI429285431	0.9046916	A	0.9043818	A	1.00021476005418	0	lncRNA	39053-1_{1..1743}	n346514|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2064|NULL|-1.3160000|-0.3301763	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346514|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2064|NULL|-1.3160000|-0.3301763	chr19	 41984591	 41986333	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_51935_PI429285431	1.5343121	A	1.4318432	A	1.07360917061742	0	lncRNA	55476-1_{1..655}	hg19_lincRNAsTranscripts_TCONS_l2_00016153 range=chr20:10727753-10734662 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016153 range=chr20:10727753-10734662 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 10727753	 10728407	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9316_PI429285431	1.2251675	A	0.8890965	A	1.26231415341775	0	lncRNA	10823-1_{1..815}	lnc-HERPUD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HERPUD2-1:1	chr7	 35660719	 35661533	-	lnc-HERPUD2-1	lnc-HERPUD2-1:1	XLOC_006409	linc-TBX20-4	NA	NA	NA	inter
LNCA_21_P0010768	6.334901	P	5.8284163	P	1.4205845499512	0	lncRNA	XR_132869	XR_132869	XR_132869	NA	Hs.534619	LOC100652887	uncharacterized LOC100652887	ENST00000453946	THC2546491	NA	"PREDICTED: Homo sapiens hypothetical LOC100652887, transcript variant 1 (LOC100652887), miscRNA [XR_132869]"	chr1:142805291-142805232	hs|1q21.1	Agilent_HUMAN_G3V2	XR_132869	XR_132869	chr1	142805232	142805291	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18833_PI429285431	3.93861	P	3.778078	P	1.11769921848233	0	lncRNA	20527-1_{1..443}	lnc-MYC-2:26	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYC-2:26	chr8	129113226	129113668	+	lnc-MYC-2	lnc-MYC-2:26	ENSG00000249859	PVT1	NA	NA	NA	inter
CUST_36914_PI429285431	0.88834685	A	0.8805243	A	1.00543690509176	0	lncRNA	38073-2_{3001..6000}	n345387|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_936|NULL|-1.5503700|-0.2582715	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345387|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_936|NULL|-1.5503700|-0.2582715	chr20	 36124184	 36127183	-	NA	NA	NA	NA	BLCAP	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60chr20:36145819-36153449"	NA	inter
LNCA_21_P0002798	7.5057325	P	7.7272215	P	0.857679771479009	0	lncRNA	ENST00000494887	NA	NA	NA	NA	XLOC_002909	NA	ENST00000494887	NA	NA	"BROAD Institute lincRNA (XLOC_002909), lincRNA [TCONS_00005649]"	chr3:167632709-167632768	hs|3q26.2	Agilent_HUMAN_G3V2	ENST00000494887	ENST00000494887	chr3	167632709	167632768	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1284_PI429285431	0.8993244	A	0.8882616	A	1.00769762417358	0	lncRNA	1275-1_{1..3000}	"transcript_id ""ENST00000451707.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451707.1"" | genecode_v17"	chr3	  1049819	  1052818	+	ENSG00000235158.1	ENST00000451707.1	AC087430.1	AC087430.1-001	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_43179_PI429285431	5.8923597	P	6.1451225	P	0.839287616826597	0	lncRNA	47993-1_{1..640}	ENST00000602900 havana:sense_intronic chromosome:GRCh37:11:113239200:113239839:1 gene:ENSG00000270179 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602900 havana:sense_intronic chromosome:GRCh37:11:113239200:113239839:1 gene:ENSG00000270179 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr11	113239200	113239839	+	ENSG00000270179	ENST00000602900	NA	NA	TTC12	NA	chr11:113229200-113237114	inter
CUST_7566_PI429285431	4.0720367	P	4.0279975	P	1.03099633199648	0	lncRNA	9202-1_{1..550}	lnc-PCYOX1L-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCYOX1L-2:11	chr5	148803653	148804202	+	lnc-PCYOX1L-2	lnc-PCYOX1L-2:11	ENSG00000249669	XLOC_004598	NA	NA	NA	inter
LNCA_21_P0006506	3.5055077	P	1.7923923	A	3.27868067905561	0	lncRNA	THC2647795	NA	NA	NA	NA	XLOC_008020	NA	NA	THC2647795	NA	"BROAD Institute lincRNA (XLOC_008020), lincRNA [TCONS_00017204]"	chrX:080068160-080068219	hs|Xq21.1	Agilent_HUMAN_G3V2	THC2647795	THC2647795	chrX	 80068160	 80068219	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011859	6.2791653	P	6.602495	P	0.799223162511482	0	lncRNA	TCONS_l2_00014016	NA	NA	NA	NA	XLOC_l2_007586	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007586), lincRNA [TCONS_l2_00014016]"	chr2:145425530-145425589	hs|2q22.3	Agilent_HUMAN_G3V2	TCONS_l2_00014016	TCONS_l2_00014016	chr2	145425530	145425589	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012335	0.8855757	A	0.87870216	A	1.00477574255155	0	lncRNA	ENST00000338526	XM_003118756	XM_003118756	NA	Hs.448906	XLOC_l2_009448	NA	ENST00000338526	THC2498480	NA	"BROAD Institute lincRNA (XLOC_l2_009448), lincRNA [TCONS_l2_00018304]"	chr22:17154510-17154451	hs|22q11.1	Agilent_HUMAN_G3V2	ENST00000338526	ENST00000338526	chr22	 17154451	 17154510	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007686	0.885255	A	0.8787613	A	1.00451123496696	0	lncRNA	TCONS_00020710	NA	NA	NA	NA	XLOC_010009	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010009), lincRNA [TCONS_00020710]"	chr12:9519895-9519836	hs|12p13.31	Agilent_HUMAN_G3V2	TCONS_00020710	TCONS_00020710	chr12	  9519836	  9519895	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30251_PI429285431	1.8499113	A	2.1185312	A	0.830113262774568	0	lncRNA	32026-1_{1..335}	n335127|AY187237|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250922|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250922|1.7043200|-0.1108876	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335127|AY187237|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250922|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250922|1.7043200|-0.1108876	chr16	 50746105	 50746439	+	NA	NA	NA	NA	NOD2	NA	chr16:50736105-50766987	inner
LNCA_21_P0002385	2.8763633	A	1.5675266	A	2.47741695855576	0	lncRNA	ENST00000453678	NA	NA	NA	NA	XLOC_001958	NA	ENST00000453678	NA	NA	"BROAD Institute lincRNA (XLOC_001958), lincRNA [TCONS_00005065]"	chr2:5774309-5761454	hs|2p25.2	Agilent_HUMAN_G3V2	ENST00000453678	ENST00000453678	chr2	  5761454	  5774309	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47627_PI429285431	1.9320009	A	1.6929398	A	1.18022432630371	0	lncRNA	51618-1_{1..3000}	"gi|372620356|ref|NR_046008.1| Homo sapiens zinc finger, matrin-type 1 (ZMAT1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|372620356|ref|NR_046008.1| Homo sapiens zinc finger, matrin-type 1 (ZMAT1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_046008.1	NA	NA	NA	NA	NA	Unknown
CUST_36301_PI429285431	2.6351366	A	2.8920603	A	0.836870501191915	0	lncRNA	37533-1_{1..789}	n344828|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_377|NULL|-1.3008200|-0.1827191	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344828|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_377|NULL|-1.3008200|-0.1827191	chr5	 74907075	 74907863	-	NA	NA	NA	NA	ANKDD1B	NA	chr5:74916140-74918056	inter
CUST_21501_PI429285431	3.2123547	A	3.738569	P	0.694374416845314	0	lncRNA	23119-1_{1..222}	lnc-GJE1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GJE1-1:1	chr6	142410277	142410498	+	lnc-GJE1-1	lnc-GJE1-1:1	ENSG00000236822.1	RP11-137J7.2	NMBR	"hg19_refFlat_NMBR:range=chr6:142396785-1424097955'pad=0,hg19_refFlat_NMBR:range=chr6:142396785-1424097955'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00chr6:142400277-142409936"	NA	inter
CUST_47931_PI429285431	2.275758	A	2.9490283	A	0.627083602322864	0	lncRNA	51822-1_{1..1247}	"gi|410172287|ref|XR_171696.1| PREDICTED: Homo sapiens IQ motif containing with AAA domain 1 pseudogene 1 (IQCA1P1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172287|ref|XR_171696.1| PREDICTED: Homo sapiens IQ motif containing with AAA domain 1 pseudogene 1 (IQCA1P1), misc_RNA"	NA	NA	NA	NA	NA	XR_171696.1	NA	NA	NA	NA	NA	Unknown
CUST_13584_PI429285431	0.9181316	A	1.7197239	A	0.573715619006219	0	lncRNA	15225-1_{1..1038}	lnc-AGT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AGT-1:1	chr1	230775633	230776670	-	lnc-AGT-1	lnc-AGT-1:1	XLOC_001249	linc-PGBD5-2	COG2	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.70chr1:230778202-230786446"	NA	inter
CUST_23769_PI429285431	0.91363573	A	0.9096995	A	1.00273211216097	0	lncRNA	25332-1_{1..611}	lnc-KIAA0087-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA0087-2:2	chr7	 26415707	 26416317	-	lnc-KIAA0087-2	lnc-KIAA0087-2:2	ENSG00000225792.1	AC004540.4	SNX10	"hg19_refFlat_SNX10:range=chr7:26404707-264121925'pad=0,hg19_refFlat_SNX10:range=chr7:26404707-264121925'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SNX10:range=chr7:26386063-264121925'pad=0,hg19_refFlat_SNX10:range=chr7:26386063-264121925'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_SNX10:range=chr7:26400580-264121925'pad=0,hg19_refFlat_SNX10:range=chr7:26400580-264121925'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00chr7:26405707-26413949"	NA	inter
CUST_44640_PI429285431	0.92642015	A	0.92094374	A	1.00380317192507	0	lncRNA	49204-1_{1..1142}	"gi|397139115|ref|XR_158999.1| PREDICTED: Homo sapiens uncharacterized LOC100507427 (LOC100507427), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139115|ref|XR_158999.1| PREDICTED: Homo sapiens uncharacterized LOC100507427 (LOC100507427), misc_RNA"	NA	NA	NA	NA	NA	XR_158999.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004611	1.6468747	A	3.1176329	P	0.360792636572252	0	lncRNA	XR_108665	XR_108665	XR_108665	NA	Hs.485640	LOC100506188	uncharacterized LOC100506188	NA	THC2603507	NA	"PREDICTED: Homo sapiens hypothetical LOC100506188 (LOC100506188), miscRNA [XR_108665]"	chr6:57125399-57125340	hs|6p11.2	Agilent_HUMAN_G3V2	XR_108665	XR_108665	chr6	 57125340	 57125399	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010739	3.520189	P	3.3392215	P	1.13364387457397	0	lncRNA	ENST00000440104	NA	NA	NA	NA	XLOC_l2_000631	NA	ENST00000440104	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000631), lincRNA [TCONS_l2_00002307]"	chr1:221684171-221684230	hs|1q41	Agilent_HUMAN_G3V2	ENST00000440104	ENST00000440104	chr1	221684171	221684230	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009896	0.92375284	A	0.97564775	A	0.964668451211845	0	lncRNA	ENST00000448580	NA	NA	NA	NA	XLOC_013712	NA	ENST00000448580	THC2658255	NA	"BROAD Institute lincRNA (XLOC_013712), lincRNA [TCONS_00028033]"	chr20:25989552-25989493	hs|20p11.1	Agilent_HUMAN_G3V2	ENST00000448580	ENST00000448580	chr20	 25989493	 25989552	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001657	1.5850697	A	0.96008605	A	1.54219334769893	0	lncRNA	TCONS_00001917	NA	NA	NA	NA	XLOC_000022	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000022), lincRNA [TCONS_00001917]"	chr1:2482962-2483021	hs|1p36.32	Agilent_HUMAN_G3V2	TCONS_00001917	TCONS_00001917	chr1	  2482962	  2483021	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39196_PI429285431	9.615934	P	8.849629	P	1.70090787086676	0	lncRNA	40171-1_{1..1963}	n385951|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009wiu.1||0.0157268|-0.3183058	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385951|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc009wiu.1||0.0157268|-0.3183058	chr1	145499072	145501034	+	NA	NA	NA	NA	LIX1L	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-13.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80chr1:145489072-145499091"	NA	inner
CUST_13138_PI429285431	0.91111934	A	1.9397736	A	0.490167161522625	0	lncRNA	14766-1_{1..1135}	lnc-CTTNBP2-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTTNBP2-3:2	chr7	117809169	117810303	-	lnc-CTTNBP2-3	lnc-CTTNBP2-3:2	XLOC_006578	linc-CTTNBP2-1	NA	NA	NA	inter
LNCA_21_P0007487	1.140116	A	0.9277092	A	1.15861945870138	0	lncRNA	ENST00000548779	NA	AK093193	NA	Hs.524596	XLOC_009807	NA	ENST00000548779	THC2619920	NA	"BROAD Institute lincRNA (XLOC_009807), lincRNA [TCONS_00020190]"	chr12:75645586-75645645	hs|12q21.1	Agilent_HUMAN_G3V2	ENST00000548779	ENST00000548779	chr12	 75645586	 75645645	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003200	5.968205	P	6.1008887	P	0.912133121902806	0	lncRNA	TCONS_00006730	NA	NA	NA	NA	XLOC_003365	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003365), lincRNA [TCONS_00006730]"	chr3:187679086-187676703	hs|3q27.3	Agilent_HUMAN_G3V2	TCONS_00006730	TCONS_00006730	chr3	187676703	187679086	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001761	4.762111	P	4.9479427	P	0.879142112721751	0	lncRNA	TCONS_00002622	NA	NA	NA	NA	XLOC_001264	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001264), lincRNA [TCONS_00002622]"	chr1:234852511-234852452	hs|1q42.3	Agilent_HUMAN_G3V2	TCONS_00002622	TCONS_00002622	chr1	234852452	234852511	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006621	0.893041	A	3.5992174	P	0.153235620063719	0	lncRNA	ENST00000542093	NA	AK128534	NA	Hs.678826	XLOC_008707	NA	ENST00000542093	THC2483495	NA	"BROAD Institute lincRNA (XLOC_008707), lincRNA [TCONS_00017727]"	chr10:5559367-5559308	hs|10p15.1	Agilent_HUMAN_G3V2	ENST00000542093	ENST00000542093	chr10	  5559308	  5559367	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48084_PI429285431	0.9089395	A	0.9174839	A	0.994094976819885	0	lncRNA	51960-1_{1..2137}	"gi|310114852|ref|XR_112792.1| PREDICTED: Homo sapiens uncharacterized LOC100128482 (LOC100128482), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310114852|ref|XR_112792.1| PREDICTED: Homo sapiens uncharacterized LOC100128482 (LOC100128482), misc_RNA"	NA	NA	NA	NA	NA	XR_112792.1	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-12.30"	NA	Unknown
CUST_43342_PI429285431	5.2020144	P	3.954504	P	2.37431343686213	0	lncRNA	48167-1_{1..1371}	"gi|299829265|ref|NR_033908.1| Homo sapiens general transcription factor IIi pseudogene (LOC100288069), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|299829265|ref|NR_033908.1| Homo sapiens general transcription factor IIi pseudogene (LOC100288069), non-coding RNA"	Chr1	   700245	   701615	-	100288069	NR_033908.1	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60"	NA	inter
CUST_3865_PI429285431	0.901318	A	0.9061137	A	0.996681392856056	0	lncRNA	3834-1_{1..465}	"transcript_id ""ENST00000533082.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533082.1"" | genecode_v17"	chr11	 15593569	 15594033	-	ENSG00000254789.1	ENST00000533082.1	RP11-531H8.2	RP11-531H8.2-001	NA	NA	NA	inter
CUST_1347_PI429285431	2.293314	A	2.047527	A	1.18573942350428	0	lncRNA	1336-1_{1..548}	"transcript_id ""ENST00000605537.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605537.1"" | genecode_v17"	chr3	 44038388	 44038935	+	ENSG00000271192.1	ENST00000605537.1	RP4-555D20.3	RP4-555D20.3-001	NA	NA	NA	inter
CUST_27021_PI429285431	6.2800035	P	6.325862	P	0.968713196273529	0	lncRNA	28551-1_{1..665}	n324126|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001163|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001163|-0.9354130|-0.2380511	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324126|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001163|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001163|-0.9354130|-0.2380511	chr9	 34655661	 34656325	+	NA	NA	NA	NA	IL11RA	NA	chr9:34652182-34661884	inner
LNCA_21_P0007699	2.1732752	A	1.7898952	A	1.30439426215274	0	lncRNA	TCONS_00020758	NA	NA	NA	NA	XLOC_010049	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010049), lincRNA [TCONS_00020758]"	chr12:34369867-34369808	hs|12p11.1	Agilent_HUMAN_G3V2	TCONS_00020758	TCONS_00020758	chr12	 34369808	 34369867	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29054_PI429285431	0.9993871	A	0.92808044	A	1.05066785077563	0	lncRNA	30783-1_{1..683}	n326544|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027497|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027497|-1.1933500|-0.3524623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326544|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000027497|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000027497|-1.1933500|-0.3524623	chr1	 84028550	 84029232	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002455	0.8851247	A	1.9578806	A	0.475409981860857	0	lncRNA	TCONS_00004296	NA	NA	NA	NA	XLOC_002142	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002142), lincRNA [TCONS_00004296]"	chr2:67402379-67402320	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00004296	TCONS_00004296	chr2	 67402320	 67402379	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17540_PI429285431	2.7618585	A	2.7036602	A	1.04116469706752	0	lncRNA	19265-1_{1..451}	lnc-SORL1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SORL1-2:2	chr11	121777015	121777465	+	lnc-SORL1-2	lnc-SORL1-2:2	XLOC_009306	linc-UBASH3B-3	NA	NA	NA	inter
CUST_45186_PI429285431	4.778344	P	4.1565375	P	1.53880081623028	0	lncRNA	49656-2_{3001..6000}	"gi|410170559|ref|XR_171115.1| PREDICTED: Homo sapiens uncharacterized LOC101059959 (LOC101059959), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410170559|ref|XR_171115.1| PREDICTED: Homo sapiens uncharacterized LOC101059959 (LOC101059959), misc_RNA"	NA	NA	NA	NA	NA	XR_171115.1	NA	NA	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.60;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-30.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-24.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.11;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80"	NA	Unknown
CUST_25409_PI429285431	0.9128308	A	0.9141977	A	0.999052985820128	0	lncRNA	26940-1_{1..3000}	lnc-BUB1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-BUB1B-1:1	chr15	 40525645	 40528644	+	lnc-BUB1B-1	lnc-BUB1B-1:1	ENSG00000260648.1	RP11-133K1.7	PAK6	NA	chr15:40515645-40538308	inner
LNCA_21_P0003849	0.88673145	A	0.8764446	A	1.00715578219774	0	lncRNA	TCONS_00008872	NA	NA	NA	NA	XLOC_003653	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003653), lincRNA [TCONS_00008872]"	chr4:115611034-115611093	hs|4q26	Agilent_HUMAN_G3V2	TCONS_00008872	TCONS_00008872	chr4	115611034	115611093	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00317237	2.1314528	A	3.458047	P	0.398708370841281	0	lncRNA	XR_132505	XR_132505	XR_132505	NA	NA	LOC100653004	NA	NA	THC2668937	NA	"PREDICTED: Homo sapiens hypothetical LOC100653004 (LOC100653004), miscRNA [XR_132505]"	chr5:43076388-43076447	hs|5p12	Agilent_HUMAN_G3V2	XR_132505	XR_132505	chr5	 43076388	 43076447	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17583_PI429285431	0.92026925	A	0.91754776	A	1.00188817347923	0	lncRNA	19309-1_{1..759}	lnc-CDYL2-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDYL2-2:5	chr16	 80602713	 80603471	-	lnc-CDYL2-2	lnc-CDYL2-2:5	XLOC_012020	linc-MAF-5	NA	NA	NA	inter
LNCA_19_P00322836	4.069399	P	4.366292	P	0.814003554828475	0	lncRNA	ENST00000503048	NA	NA	NA	NA	XLOC_005056	NA	ENST00000503048	NA	NA	"BROAD Institute lincRNA (XLOC_005056), lincRNA [TCONS_00009802]"	chr5:152603101-152603042	hs|5q33.1	Agilent_HUMAN_G3V2	ENST00000503048	ENST00000503048	chr5	152603042	152603101	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41185_PI429285431	1.0718471	A	0.8831358	A	1.13974517365153	0	lncRNA	42036-1_{1..85}	ENST00000385020 ncrna:miRNA chromosome:GRCh37:X:151128100:151128184:-1 gene:ENSG00000207753 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385020 ncrna:miRNA chromosome:GRCh37:X:151128100:151128184:-1 gene:ENSG00000207753 gene_biotype:miRNA transcript_biotype:miRNA	chrX	151128100	151128184	-	ENSG00000207753	ENST00000385020	NA	NA	GABRE	NA	chrX:151121596-151138184	inner
LNCA_21_P0006905	1.3140982	A	0.8787899	A	1.35219976356096	0	lncRNA	TCONS_00018321	NA	NA	NA	NA	XLOC_008600	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008600), lincRNA [TCONS_00018321]"	chr10:106357261-106357320	hs|10q25.1	Agilent_HUMAN_G3V2	TCONS_00018321	TCONS_00018321	chr10	106357261	106357320	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30705_PI429285431	1.7393556	A	0.9186661	A	1.7662499258591	0	lncRNA	32487-1_{1..432}	n336213|X94053|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324815|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324815|2.5739200|-0.0600141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336213|X94053|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324815|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324815|2.5739200|-0.0600141	chr14	107034728	107035159	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22809_PI429285431	0.89099145	A	0.8848308	A	1.00427936763247	0	lncRNA	24389-1_{1..609}	lnc-POLD3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POLD3-2:1	chr11	 74167687	 74168295	+	lnc-POLD3-2	lnc-POLD3-2:1	ENSG00000254928.1	RP11-702H23.6	KCNE3	NA	chr11:74165886-74177870	inner
LNCA_21_P0011702	9.703623	P	9.900697	P	0.872317960912821	0	lncRNA	TCONS_l2_00012635	NA	NA	NA	NA	XLOC_l2_006789	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006789), lincRNA [TCONS_l2_00012635]"	chr19:51690475-51690534	hs|19q13.41	Agilent_HUMAN_G3V2	TCONS_l2_00012635	TCONS_l2_00012635	chr19	 51690475	 51690534	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46996_PI429285431	4.7210965	P	5.366017	P	0.639528030988342	0	lncRNA	51095-1_{1..581}	"gi|341915827|ref|XR_132647.1| PREDICTED: Homo sapiens uncharacterized LOC100652778 (LOC100652778), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ensembl.GRCh37.72,ncbi,"	">gi|341915827|ref|XR_132647.1| PREDICTED: Homo sapiens uncharacterized LOC100652778 (LOC100652778), misc_RNA"	NA	NA	NA	NA	NA	XR_132647.1	NA	NA	NA	NA	NA	Unknown
LNCA_24_P694820	2.712443	A	3.2791073	P	0.675176080674659	0	lncRNA	XR_132741	XR_132741	XR_132741	100652917	NA	LOC100652917	uncharacterized LOC100652917	NA	THC2533951	NA	"PREDICTED: Homo sapiens hypothetical LOC100652917 (LOC100652917), miscRNA [XR_132741]"	chr18:74696037-74696096	hs|18q23	Agilent_HUMAN_G3V2	XR_132741	XR_132741	chr18	 74696037	 74696096	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2081_PI429285431	1.2499892	A	0.90854615	A	1.26702329539055	0	lncRNA	2072-1_{1..499}	"transcript_id ""ENST00000508097.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508097.1"" | genecode_v17"	chr5	  9854489	  9854987	+	ENSG00000250814.1	ENST00000508097.1	RP11-447B18.1	RP11-447B18.1-001	NA	NA	NA	inter
CUST_38268_PI429285431	1.9447613	A	1.0173421	A	1.90187074362385	0	lncRNA	39324-1_{1..3000}	n381838|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qwb.1||3.2244700|-0.2898169	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381838|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001qwb.1||3.2244700|-0.2898169	chr12	  9709909	  9712908	+	NA	NA	NA	NA	OVOS	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-54.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80chr12:9699909-9725776"	NA	inter
CUST_3748_PI429285431	5.758529	P	5.5849843	P	1.12782615073168	0	lncRNA	3717-1_{1..800}	"transcript_id ""ENST00000477192.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000477192.1"" | genecode_v17"	chr10	 81564241	 81565040	-	ENSG00000225484.2	ENST00000477192.1	RP11-773D16.1	RP11-773D16.1-005	NA	NA	NA	inter
CUST_32203_PI429285431	1.602165	A	0.9339454	A	1.58911066845618	0	lncRNA	33900-1_{1..1040}	n338780|CR608674|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1202|NULL|-1.1742400|-0.3870637	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338780|CR608674|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1202|NULL|-1.1742400|-0.3870637	chr2	 39242994	 39244033	-	NA	NA	NA	NA	SOS1	NA	chr2:39232994-39254034	inner
LNCA_21_P0003878	2.8055263	A	3.3098857	P	0.70497333745422	0	lncRNA	TCONS_00008980	NA	NA	NA	NA	XLOC_003837	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003837), lincRNA [TCONS_00008980]"	chr4:189717707-189717766	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008980	TCONS_00008980	chr4	189717707	189717766	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001303	2.5928059	A	1.9855843	A	1.52332270625751	0	lncRNA	TCONS_00000953	NA	NA	NA	NA	XLOC_000211	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000211), lincRNA [TCONS_00000953]"	chr1:56441084-56441143	hs|1p32.2	Agilent_HUMAN_G3V2	TCONS_00000953	TCONS_00000953	chr1	 56441084	 56441143	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014591	1.7855303	A	0.8918777	A	1.85787391983763	0	lncRNA	XR_110418	XR_110418	XR_110418	NA	Hs.559827	LOC100507280	uncharacterized LOC100507280	NA	THC2659602	NA	"PREDICTED: Homo sapiens hypothetical LOC100507280 (LOC100507280), miscRNA [XR_110418]"	chr10:75503476-75503417	hs|10q22.2	Agilent_HUMAN_G3V2	XR_110418	XR_110418	chr10	 75503417	 75503476	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007202	0.8863541	A	0.888043	A	0.998830028677501	0	lncRNA	ENST00000526615	NA	NA	NA	NA	HSD17B12	hydroxysteroid (17-beta) dehydrogenase 12	ENST00000526615	THC2648169	GO:0004303|GO:0006694|GO:0005783|GO:0005518|GO:0010811|GO:0035338|GO:0031012|GO:0000166|GO:0016020|GO:0030198|GO:0005789|GO:0016491|GO:0019432|GO:0016021|GO:0001968|GO:0008201|GO:0044255	"BROAD Institute lincRNA (XLOC_009116), lincRNA [TCONS_00019284]"	chr11:43694745-43694804	hs|11p11.2	Agilent_HUMAN_G3V2	ENST00000526615	ENST00000526615	chr11	 43694745	 43694804	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41868_PI429285431	10.226634	P	10.120341	P	1.07645872287359	0	lncRNA	43528-1_{1..117}	ENST00000408490 ncrna:miRNA chromosome:GRCh37:20:60528602:60528718:-1 gene:ENSG00000221417 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408490 ncrna:miRNA chromosome:GRCh37:20:60528602:60528718:-1 gene:ENSG00000221417 gene_biotype:miRNA transcript_biotype:miRNA	chr20	 60528602	 60528718	-	ENSG00000221417	ENST00000408490	NA	NA	NA	NA	NA	inter
CUST_46239_PI429285431	1.3755056	A	1.4862885	A	0.926085371455365	0	lncRNA	50478-1_{1..731}	"gi|388890207|ref|NR_047005.1| Homo sapiens long intergenic non-protein coding RNA 381 (LINC00381), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|388890207|ref|NR_047005.1| Homo sapiens long intergenic non-protein coding RNA 381 (LINC00381), non-coding RNA"	Chr13	 74993310	 74994040	+	100874151	NR_047005.1	NA	NA	NA	NA	NA	inter
CUST_30306_PI429285431	4.623249	P	5.5394926	P	0.529886912393263	0	lncRNA	32082-1_{1..428}	n335212|AY536245|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255239|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255239|2.4859000|-0.1279831	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335212|AY536245|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255239|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255239|2.4859000|-0.1279831	chr22	 23603116	 23603543	+	NA	NA	NA	NA	BCR	NA	chr22:23593116-23637298	inner
CUST_20499_PI429285431	1.2386307	A	1.0911145	A	1.10766083748933	0	lncRNA	22141-1_{1..875}	lnc-PODXL-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PODXL-1:6	chr7	131011565	131012439	-	lnc-PODXL-1	lnc-PODXL-1:6	ENSG00000236753.1	AC018642.1	MKLN1	NA	chr7:131001565-131022079	inner
CUST_33868_PI429285431	0.90528464	A	0.89040405	A	1.01036781619028	0	lncRNA	35412-1_{1..1037}	n340656|AJ406945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3118|NULL|1.3495400|-0.1065141	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340656|AJ406945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3118|NULL|1.3495400|-0.1065141	chr17	 39295684	 39296720	-	NA	NA	NA	NA	KRTAP4-5	NA	chr17:39305176-39306054	inner
CUST_7716_PI429285431	6.9299054	P	6.960454	P	0.979047933494664	0	lncRNA	9347-1_{1..411}	lnc-PCYOX1L-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PCYOX1L-2:4	chr5	148801044	148801454	+	lnc-PCYOX1L-2	lnc-PCYOX1L-2:4	ENSG00000249669	RP11-394O4.2	NA	NA	NA	inter
CUST_13086_PI429285431	1.0967648	A	0.9036044	A	1.14326543752308	0	lncRNA	14713-1_{1..753}	lnc-FOXA2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXA2-1:3	chr20	 22587984	 22588736	-	lnc-FOXA2-1	lnc-FOXA2-1:3	XLOC_013685	linc-FOXA2-2	NA	NA	NA	inter
CUST_51200_PI429285431	1.3712339	A	0.9070344	A	1.37955167699256	0	lncRNA	54819-1_{1..2724}	hg19_lincRNAsTranscripts_TCONS_l2_00008942 range=chr15:23190057-23208584 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008942 range=chr15:23190057-23208584 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr15	 23190057	 23192780	-	NA	NA	NA	NA	NA	"hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70"	NA	inter
LNCA_21_P0010643	0.8861043	A	2.0658123	A	0.441440836277596	0	lncRNA	TCONS_l2_00001461	NA	NA	NA	NA	XLOC_l2_001064	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001064), lincRNA [TCONS_l2_00001461]"	chr1:117006421-117004309	hs|1p13.1	Agilent_HUMAN_G3V2	TCONS_l2_00001461	TCONS_l2_00001461	chr1	117004309	117006421	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00811216	2.6024725	A	2.958444	P	0.781343315218465	0	lncRNA	TCONS_l2_00012434	NA	NA	NA	NA	XLOC_l2_006673	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006673), lincRNA [TCONS_l2_00012434]"	chr19:28300571-28300630	hs|19q11	Agilent_HUMAN_G3V2	TCONS_l2_00012434	TCONS_l2_00012434	chr19	 28300571	 28300630	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4022_PI429285431	3.65626	P	3.6015522	P	1.03864871656808	0	lncRNA	3983-1_{1..406}	"transcript_id ""ENST00000525952.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000525952.1"" | genecode_v17"	chr11	 78803893	 78804298	+	ENSG00000255345.1	ENST00000525952.1	CTD-2337I7.1	CTD-2337I7.1-002	ODZ4	NA	chr11:78793893-78814880	inner
LNCA_19_P00321124	0.88719	A	2.6866632	A	0.28727946967906	0	lncRNA	BC015429	NA	BC015429	NA	NA	XLOC_008823	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008823), lincRNA [TCONS_00017736]"	chr10:54210932-54210873	hs|10q21.1	Agilent_HUMAN_G3V2	BC015429	BC015429	chr10	 54210873	 54210932	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22282_PI429285431	0.9006784	A	0.89875674	A	1.00133288070795	0	lncRNA	23882-1_{1..327}	lnc-ROPN1B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ROPN1B-2:1	chr3	125804202	125804528	+	lnc-ROPN1B-2	lnc-ROPN1B-2:1	ENSG00000250012.1	RP11-124N2.1	SLC41A3	NA	chr3:125794202-125814295	inner
LNCA_21_P0002681	3.40703	P	0.8786827	A	5.76910411521666	0	lncRNA	THC2705861	NA	NA	NA	NA	XLOC_002383	NA	NA	THC2705861	NA	"BROAD Institute lincRNA (XLOC_002383), lincRNA [TCONS_00005269]"	chr2:169198178-169198119	hs|2q24.3	Agilent_HUMAN_G3V2	THC2705861	THC2705861	chr2	169198119	169198178	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002737	0.8784156	A	0.8770939	A	1.00091655240622	0	lncRNA	ENST00000415991	NA	NA	NA	NA	XLOC_002612	NA	ENST00000415991	THC2622354	NA	"BROAD Institute lincRNA (XLOC_002612), lincRNA [TCONS_00005511]"	chr3:34401787-34401846	hs|3p22.3	Agilent_HUMAN_G3V2	ENST00000415991	ENST00000415991	chr3	 34401787	 34401846	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3402010	7.5622306	P	7.8543224	P	0.816717021008369	0	lncRNA	XR_133048	XR_133048	XR_133048	    89919	Hs.551210	C14orf56	chromosome 14 open reading frame 56	NA	THC2750828	NA	"PREDICTED: Homo sapiens chromosome 14 open reading frame 56 (C14orf56), miscRNA [XR_133048]"	chr14:71683095-71683036	hs|14q24.2	Agilent_HUMAN_G3V2	XR_133048	XR_133048	chr14	 71683036	 71683095	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005764	0.92603964	A	0.96658915	A	0.972284542144473	0	lncRNA	TCONS_00014861	NA	NA	NA	NA	XLOC_006929	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006929), lincRNA [TCONS_00014861]"	chr8:133513478-133513537	hs|8q24.22	Agilent_HUMAN_G3V2	TCONS_00014861	TCONS_00014861	chr8	133513478	133513537	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010003	0.92626876	A	1.4328048	A	0.703910523658223	0	lncRNA	TCONS_00028317	NA	NA	NA	NA	XLOC_013652	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013652), lincRNA [TCONS_00028317]"	chr20:11851305-11849701	hs|20p12.2	Agilent_HUMAN_G3V2	TCONS_00028317	TCONS_00028317	chr20	 11849701	 11851305	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33424_PI429285431	0.9051676	A	1.1716386	A	0.831350641091443	0	lncRNA	35002-1_{1..795}	n340152|BC034627|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2612|NULL|-1.1580700|-0.2468892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340152|BC034627|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2612|NULL|-1.1580700|-0.2468892	chr10	118429613	118430407	+	NA	NA	NA	NA	HSPA12A	NA	chr10:118430703-118442250	inner
LNCA_21_P0004720	0.9214944	A	0.96675235	A	0.969116526010559	0	lncRNA	ENST00000415144	NA	NA	NA	NA	XLOC_005587	NA	ENST00000415144	THC2755982	NA	"BROAD Institute lincRNA (XLOC_005587), lincRNA [TCONS_00011436]"	chr6:4021319-4019096	hs|6p25.2	Agilent_HUMAN_G3V2	ENST00000415144	ENST00000415144	chr6	  4019096	  4021319	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014801	5.9801025	P	6.2907057	P	0.80630456765266	0	lncRNA	ENST00000446344	XR_132615	XR_132615	NA	Hs.123450	LOC100652950	NA	ENST00000446344	THC2477166	NA	"PREDICTED: Homo sapiens hypothetical LOC100652950, transcript variant 1 (LOC100652950), miscRNA [XR_132615]"	chr16:87731818-87731759	hs|16q24.2	Agilent_HUMAN_G3V2	ENST00000446344	ENST00000446344	chr16	 87731759	 87731818	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42222_PI429285431	1.3462024	A	1.4843197	A	0.908704230189435	0	lncRNA	44329-1_{1..80}	ENST00000385259 ncrna:miRNA chromosome:GRCh37:11:122022937:122023016:-1 gene:ENSG00000207994 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385259 ncrna:miRNA chromosome:GRCh37:11:122022937:122023016:-1 gene:ENSG00000207994 gene_biotype:miRNA transcript_biotype:miRNA	chr11	122022937	122023016	-	ENSG00000207994	ENST00000385259	NA	NA	NA	NA	NA	inter
LNCA_21_P0006363	0.915817	A	2.2620692	A	0.393312461039394	0	lncRNA	TCONS_00016665	NA	NA	NA	NA	XLOC_007505	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007505), lincRNA [TCONS_00016665]"	chr9:110100845-110100904	hs|9q31.2	Agilent_HUMAN_G3V2	TCONS_00016665	TCONS_00016665	chr9	110100845	110100904	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7663_PI429285431	0.91779053	A	0.9137644	A	1.00279459828801	0	lncRNA	9295-1_{1..1475}	lnc-TFAP2A-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TFAP2A-4:1	chr6	 10513565	 10515039	-	lnc-TFAP2A-4	lnc-TFAP2A-4:1	ENSG00000237685	RP11-360O19.4	GCNT2	NA	chr6:10514418-10524779	inter
CUST_28642_PI429285431	1.4388313	A	2.0274496	A	0.664979467281764	0	lncRNA	30333-1_{1..862}	n326020|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047517|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047517|-0.8121740|-0.1931048	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326020|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047517|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047517|-0.8121740|-0.1931048	chr10	 33907864	 33908725	-	NA	NA	NA	NA	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40"	NA	inter
LNCA_21_P0011425	1.7519289	A	0.91747797	A	1.78317825642588	0	lncRNA	TCONS_l2_00009674	NA	NA	NA	NA	XLOC_l2_005179	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005179), lincRNA [TCONS_l2_00009674]"	chr16:31715891-31715950	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00009674	TCONS_l2_00009674	chr16	 31715891	 31715950	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_702_PI429285431	0.92052126	A	1.2227395	A	0.811004463672698	0	lncRNA	695-1_{1..946}	"transcript_id ""ENST00000590006.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590006.1"" | genecode_v17"	chr2	  6774949	  6775894	-	ENSG00000236172.2	ENST00000590006.1	AC097517.2	AC097517.2-005	NA	NA	NA	inter
CUST_44346_PI429285431	7.9912934	P	7.561464	P	1.34707427468959	0	lncRNA	48970-2_{3001..3428}	"gi|209954685|ref|NR_024253.1| Homo sapiens family with sequence similarity 86, member E, pseudogene (FAM86EP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|209954685|ref|NR_024253.1| Homo sapiens family with sequence similarity 86, member E, pseudogene (FAM86EP), non-coding RNA"	NA	NA	NA	NA	NA	NR_024253.1	NA	NA	NA	"hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0,hg19_refFlat_ALG1:range=chr16:5121851-51348825'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256533165'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0,hg19_refFlat_ALG1L:range=chr3:125648195-1256525175'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90"	NA	Unknown
CUST_16268_PI429285431	1.0627302	A	1.5575532	A	0.70964873747037	0	lncRNA	17971-1_{1..203}	lnc-KLF6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF6-3:1	chr10	  3937613	  3937815	-	lnc-KLF6-3	lnc-KLF6-3:1	XLOC_008699	linc-KLF6-6	NA	NA	NA	inter
CUST_26798_PI429285431	2.3043194	A	1.990135	A	1.24330857389992	0	lncRNA	28308-1_{1..382}	n323864|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056980|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056980|-0.9819230|-0.3455265	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323864|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056980|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056980|-0.9819230|-0.3455265	chrX	 64725008	 64725389	+	NA	NA	NA	NA	LAS1L	NA	chrX:64732462-64740030	inner
CUST_7662_PI429285431	1.0837947	A	1.2230945	A	0.907959719070021	0	lncRNA	9294-1_{1..1407}	lnc-NBN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NBN-1:1	chr8	 90769273	 90770679	-	lnc-NBN-1	lnc-NBN-1:1	ENSG00000251136	RP11-37B2.1	RIPK2	NA	chr8:90769975-90779955	inter
LNCA_21_P0011158	0.88504106	A	0.88431543	A	1.00050309489844	0	lncRNA	ENST00000414368	NA	NA	NA	NA	XLOC_l2_003843	NA	ENST00000414368	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003843), lincRNA [TCONS_l2_00006990]"	chr13:106383983-106384042	hs|13q33.2	Agilent_HUMAN_G3V2	ENST00000414368	ENST00000414368	chr13	106383983	106384042	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33571_PI429285431	1.7123983	A	1.3861941	A	1.25371045888163	0	lncRNA	35136-1_{1..236}	n340322|AF009291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2783|NULL|-1.1071500|-0.2869219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340322|AF009291|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2783|NULL|-1.1071500|-0.2869219	chr5	  8685692	  8685927	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44268_PI429285431	0.9066777	A	0.91124046	A	0.996842331724713	0	lncRNA	48908-1_{1..2378}	"gi|410170469|ref|XR_108502.3| PREDICTED: Homo sapiens uncharacterized LOC440982 (FLJ30375), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170469|ref|XR_108502.3| PREDICTED: Homo sapiens uncharacterized LOC440982 (FLJ30375), misc_RNA"	Chr3	147137615	147139992	+	440982	XR_108502.4	NA	NA	NA	NA	NA	inter
CUST_32729_PI429285431	8.179407	P	8.405651	P	0.85485758538648	0	lncRNA	34369-2_{3001..4455}	n339357|D87452|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1789|NULL|6.4536400|-0.1952810	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339357|D87452|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1789|NULL|6.4536400|-0.1952810	chr3	 49764727	 49766181	-	NA	NA	NA	NA	IP6K1	NA	chr3:49761728-49823973	inner
CUST_26706_PI429285431	0.888192	A	0.8792699	A	1.00620349090083	0	lncRNA	28203-11_{30001..32359}	n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	chr13	 70711309	 70713667	+	NA	NA	NA	NA	KLHL1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0,hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0 3'pad=0 strand=- repeatMasking=none,-105.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr13:70671309-70682625"	NA	inner
CUST_34402_PI429285431	2.0110502	A	1.4441018	A	1.48138681320759	0	lncRNA	35884-1_{1..1762}	n341272|AK093649|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3741|NULL|0.0859984|-0.3979509	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341272|AK093649|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3741|NULL|0.0859984|-0.3979509	chr7	 90017320	 90019081	+	NA	NA	NA	NA	GTPBP10	NA	chr7:90007320-90020769	inner
CUST_7095_PI429285431	0.9027318	A	0.9048388	A	0.998540604844895	0	lncRNA	7030-1_{1..451}	"transcript_id ""ENST00000444482.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444482.1"" | genecode_v17"	chrX	 73168808	 73169258	+	ENSG00000228906.1	ENST00000444482.1	RP13-216E22.4	RP13-216E22.4-001	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40"	NA	inter
CUST_29081_PI429285431	3.7991228	P	4.363796	P	0.676108551615513	0	lncRNA	30812-1_{1..2086}	n326574|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025915|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025915|-1.1257700|-0.3438533	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326574|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000025915|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000025915|-1.1257700|-0.3438533	chr1	 70944723	 70946808	+	NA	NA	NA	NA	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20"	NA	inter
CUST_23552_PI429285431	1.7286357	A	1.8387455	A	0.926517544216959	0	lncRNA	25119-1_{1..540}	lnc-WDPCP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDPCP-1:2	chr2	 63275524	 63276063	-	lnc-WDPCP-1	lnc-WDPCP-1:2	ENSG00000231609.1	AC009501.4	EHBP1	NA	chr2:63265524-63273622	inter
LNCA_21_P0002926	0.88615865	A	0.87566674	A	1.00729894623248	0	lncRNA	TCONS_00005935	NA	NA	NA	NA	XLOC_002562	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002562), lincRNA [TCONS_00005935]"	chr3:66291-66350	hs|3p26.3	Agilent_HUMAN_G3V2	TCONS_00005935	TCONS_00005935	chr3	    66291	    66350	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003994	0.88668644	A	3.1552217	P	0.207540491317325	0	lncRNA	ENST00000508829	NA	NA	NA	NA	XLOC_004371	NA	ENST00000508829	NA	NA	"BROAD Institute lincRNA (XLOC_004371), lincRNA [TCONS_00009393]"	chr5:43886671-43886730	hs|5p12	Agilent_HUMAN_G3V2	ENST00000508829	ENST00000508829	chr5	 43886671	 43886730	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19367_PI429285431	0.9021572	A	0.92313796	A	0.985562480462531	0	lncRNA	21030-1_{1..1744}	lnc-AF131215.3.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-AF131215.3.1-1:1	chr8	 10983268	 10985011	-	lnc-AF131215.3.1-1	lnc-AF131215.3.1-1:1	ENSG00000254936.3	AF131215.3	XKR6	NA	chr8:10973268-10993574	inner
LNCA_21_P0001608	0.88729817	A	0.877359	A	1.006913093534	0	lncRNA	ENST00000430519	NA	NA	NA	NA	XLOC_001138	NA	ENST00000430519	NA	NA	"BROAD Institute lincRNA (XLOC_001138), lincRNA [TCONS_00000710]"	chr1:196014344-196014285	hs|1q31.3	Agilent_HUMAN_G3V2	ENST00000430519	ENST00000430519	chr1	196014285	196014344	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22103_PI429285431	5.1322985	P	4.857124	P	1.21014045191721	0	lncRNA	23708-1_{1..1028}	lnc-SEC14L1-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SEC14L1-1:11	chr17	 75085235	 75086262	+	lnc-SEC14L1-1	lnc-SEC14L1-1:11	ENSG00000234912.3	LINC00338	SEC14L1	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-26.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60chr17:75084725-75096180"	NA	inner
CUST_40445_PI429285431	3.8689902	P	4.1710906	P	0.811070709598862	0	lncRNA	41222-1_{1..3000}	n409345|NR_033708|lncRNA|Homosapiens||RefGeneNoncode|NR_033708||1.7862600|-0.1667215	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n409345|NR_033708|lncRNA|Homosapiens||RefGeneNoncode|NR_033708||1.7862600|-0.1667215	chr1	  3652547	  3655546	-	NA	NA	NA	NA	CCDC27	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70chr1:3668965-3673937"	NA	inter
LNCA_21_P0014910	3.180444	P	1.101774	A	4.22417615887948	0	lncRNA	ENST00000454512	XR_132961	XR_132961	NA	NA	LOC100287413	NA	ENST00000454512	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100287413 (LOC100287413), miscRNA [XR_132961]"	chr11:58676012-58676071	hs|11q12.1	Agilent_HUMAN_G3V2	ENST00000454512	ENST00000454512	chr11	 58676012	 58676071	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48014_PI429285431	5.0855637	P	5.440448	P	0.781932349343457	0	lncRNA	51897-2_{3001..5036}	"gi|410173437|ref|XR_172215.1| PREDICTED: Homo sapiens uncharacterized LOC645460 (FLJ44342), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|410173437|ref|XR_172215.1| PREDICTED: Homo sapiens uncharacterized LOC645460 (FLJ44342), misc_RNA"	NA	NA	NA	NA	NA	XR_172215.1	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40"	NA	Unknown
CUST_380_PI429285431	8.314351	P	8.278286	P	1.0253134319004	0	lncRNA	372-1_{1..898}	"transcript_id ""ENST00000457719.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457719.1"" | genecode_v17"	chr1	119802888	119803785	-	ENSG00000227712.1	ENST00000457719.1	RP11-418J17.3	RP11-418J17.3-001	NA	NA	NA	inter
CUST_33610_PI429285431	3.5820968	P	4.3859754	P	0.572807147576586	0	lncRNA	35175-1_{1..311}	n340367|AF056437|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2828|NULL|-0.8887940|-0.4083036	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340367|AF056437|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2828|NULL|-0.8887940|-0.4083036	chr5	 10070642	 10070952	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18291_PI429285431	1.6865377	A	1.7816354	A	0.936208844775769	0	lncRNA	20021-2_{3001..4232}	lnc-TCL1B-1:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCL1B-1:12	chr14	 96148409	 96149640	+	lnc-TCL1B-1	lnc-TCL1B-1:12	ENSG00000187621	TCL6	TCL1B	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80chr14:96152754-96156170"	NA	inter
CUST_21813_PI429285431	0.912102	A	0.9128972	A	0.999448961239673	0	lncRNA	23422-1_{1..691}	lnc-MANSC4-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MANSC4-3:2	chr12	 27863532	 27864222	-	lnc-MANSC4-3	lnc-MANSC4-3:2	ENSG00000256377.1	RP11-1060J15.4	MRPS35	"hg19_refFlat_REP15:range=chr12:27849496-278502065'pad=0,hg19_refFlat_REP15:range=chr12:27849496-278502065'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10chr12:27855271-27873664"	NA	inter
LNCA_21_P0012235	2.8607297	A	1.8062212	A	2.07701048629584	0	lncRNA	AK127572	NA	AK127572	NA	Hs.596577	XLOC_l2_009273	NA	NA	THC2602968	NA	"BROAD Institute lincRNA (XLOC_l2_009273), lincRNA [TCONS_l2_00017538]"	chr21:47874971-47874912	hs|21q22.3	Agilent_HUMAN_G3V2	AK127572	AK127572	chr21	 47874912	 47874971	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46519_PI429285431	10.535123	P	10.629325	P	0.936790272315111	0	lncRNA	50710-1_{1..681}	"gi|315113865|ref|NR_037653.1| Homo sapiens suppressor of tumorigenicity 20 (ST20), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|315113865|ref|NR_037653.1| Homo sapiens suppressor of tumorigenicity 20 (ST20), transcript variant 5, non-coding RNA"	Chr15	 80191182	 80191862	-	400410	NR_037653.1	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-50.20"	NA	inter
CUST_43911_PI429285431	1.3057506	A	0.90384865	A	1.32124860648065	0	lncRNA	48624-2_{3001..3157}	"gi|325652003|ref|NR_028356.1| Homo sapiens mitochondrial ribosomal protein L30 (MRPL30), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|325652003|ref|NR_028356.1| Homo sapiens mitochondrial ribosomal protein L30 (MRPL30), transcript variant 3, non-coding RNA"	Chr2	 99800542	 99800698	+	51263	NR_028356.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20"	NA	inter
CUST_199_PI429285431	1.8024193	A	1.2231474	A	1.49409501776407	0	lncRNA	189-1_{1..507}	"transcript_id ""ENST00000427319.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000427319.1"" | genecode_v17"	chr1	 30882407	 30882913	-	ENSG00000236335.1	ENST00000427319.1	RP4-591L5.1	RP4-591L5.1-001	NA	NA	NA	inter
CUST_44891_PI429285431	1.9887575	A	1.9237002	A	1.04612648832199	0	lncRNA	49413-1_{1..2788}	"gi|310119929|ref|XR_108753.1| PREDICTED: Homo sapiens uncharacterized LOC100506289 (LOC100506289), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|310119929|ref|XR_108753.1| PREDICTED: Homo sapiens uncharacterized LOC100506289 (LOC100506289), misc_RNA"	Chr7	 26591458	 26594245	+	100506289	XR_108753.2	NA	NA	NA	NA	NA	inter
CUST_36084_PI429285431	1.2772744	A	1.4626093	A	0.879444902291155	0	lncRNA	37388-1_{1..3000}	n344672|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_221|NULL|-1.2987500|-0.2786196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344672|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_221|NULL|-1.2987500|-0.2786196	chr8	 29356099	 29359098	-	NA	NA	NA	NA	NA	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60"	NA	inter
CUST_38496_PI429285431	1.6077262	A	0.9037716	A	1.62896386366224	0	lncRNA	39510-1_{1..2049}	n383027|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002flh.2||0.3321850|-0.1612927	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383027|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002flh.2||0.3321850|-0.1612927	chr16	 88729780	 88731828	+	NA	NA	NA	NA	SNAI3	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60chr16:88744090-88752882"	NA	inter
CUST_33467_PI429285431	0.8923856	A	1.9742564	A	0.472415825621993	0	lncRNA	35040-1_{1..445}	n340202|AF075091|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2663|NULL|-0.3019370|-0.1287562	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340202|AF075091|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2663|NULL|-0.3019370|-0.1287562	chr4	113469092	113469536	+	NA	NA	NA	NA	C4orf21	"hg19_refFlat_C4orf21:range=chr4:113460703-1135543325'pad=0,hg19_refFlat_C4orf21:range=chr4:113460703-1135543325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00chr4:113460489-113479537"	NA	inner
CUST_1239_PI429285431	1.6107051	A	0.9238584	A	1.60976121379217	0	lncRNA	1231-1_{1..648}	"transcript_id ""ENST00000415479.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415479.1"" | genecode_v17"	chr2	216582766	216583413	+	ENSG00000230838.1	ENST00000415479.1	AC093850.2	AC093850.2-001	NA	NA	NA	inter
CUST_22386_PI429285431	5.9712925	P	6.022669	P	0.965015152086829	0	lncRNA	23976-1_{1..1410}	lnc-RPS27L-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS27L-2:2	chr15	 63341040	 63342449	-	lnc-RPS27L-2	lnc-RPS27L-2:2	ENSG00000259498.1	RP11-244F12.3	TPM1	"hg19_refFlat_TPM1:range=chr15:63340775-633621425'pad=0,hg19_refFlat_TPM1:range=chr15:63340775-633621425'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.90chr15:63334838-63351447"	NA	inner
CUST_43263_PI429285431	1.3344053	A	1.6331967	A	0.812933135897073	0	lncRNA	48081-1_{1..1024}	ENST00000568262 havana:sense_intronic chromosome:GRCh37:16:23579994:23581017:1 gene:ENSG00000260751 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>ENST00000568262 havana:sense_intronic chromosome:GRCh37:16:23579994:23581017:1 gene:ENSG00000260751 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr16	 23579994	 23581017	+	ENSG00000260751	ENST00000568262	NA	NA	UBFD1	"hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10chr16:23569994-23585710"	NA	inner
CUST_39339_PI429285431	6.503398	P	6.595538	P	0.938130155365292	0	lncRNA	40306-1_{1..442}	n386407|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010jqf.1||-1.1416300|-0.3665994	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386407|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010jqf.1||-1.1416300|-0.3665994	chr6	 26096614	 26097055	+	NA	NA	NA	NA	HIST1H4C	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20chr6:26104176-26104565"	NA	inter
CUST_2531_PI429285431	5.316376	P	5.6456814	P	0.795919594994514	0	lncRNA	2519-1_{1..161}	"transcript_id ""ENST00000412701.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412701.1"" | genecode_v17"	chr6	 41997791	 41997951	+	ENSG00000223946.1	ENST00000412701.1	RP11-533O20.2	RP11-533O20.2-001	CCND3	NA	chr6:41987791-42009120	inner
LNCA_21_P0003576	1.5600488	A	0.87719095	A	1.60531659639555	0	lncRNA	TCONS_00007997	NA	NA	NA	NA	XLOC_003460	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003460), lincRNA [TCONS_00007997]"	chr4:13491467-13491526	hs|4p15.33	Agilent_HUMAN_G3V2	TCONS_00007997	TCONS_00007997	chr4	 13491467	 13491526	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2704_PI429285431	0.91032904	A	1.4973412	A	0.665720195458888	0	lncRNA	2689-2_{3001..3881}	"transcript_id ""ENST00000605741.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605741.1"" | genecode_v17"	chr6	165244239	165245119	+	ENSG00000227455.2	ENST00000605741.1	RP11-300M24.1	RP11-300M24.1-002	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
LNCA_21_P0009358	0.88476336	A	0.8753504	A	1.00654589803731	0	lncRNA	TCONS_00025756	NA	NA	NA	NA	XLOC_012567	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012567), lincRNA [TCONS_00025756]"	chr17:70336658-70336599	hs|17q24.3	Agilent_HUMAN_G3V2	TCONS_00025756	TCONS_00025756	chr17	 70336599	 70336658	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006257	0.8855082	A	0.87533915	A	1.00707354852801	0	lncRNA	TCONS_00016279	NA	NA	NA	NA	XLOC_007654	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007654), lincRNA [TCONS_00016279]"	chr9:18420112-18420053	hs|9p22.2	Agilent_HUMAN_G3V2	TCONS_00016279	TCONS_00016279	chr9	 18420053	 18420112	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20495_PI429285431	0.9119516	A	0.89506155	A	1.01177608908226	0	lncRNA	22137-1_{1..628}	lnc-DHX36-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DHX36-1:1	chr3	153838861	153839488	-	lnc-DHX36-1	lnc-DHX36-1:1	ENSG00000243069.1	ARHGEF26-AS1	ARHGEF26	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10chr3:153839149-153849121"	NA	inner
LNCA_21_P0004399	0.8866381	A	0.87600195	A	1.00739966056176	0	lncRNA	TCONS_00010349	NA	NA	NA	NA	XLOC_004837	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004837), lincRNA [TCONS_00010349]"	chr5:57411690-57407726	hs|5q11.2	Agilent_HUMAN_G3V2	TCONS_00010349	TCONS_00010349	chr5	 57407726	 57411690	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10032_PI429285431	1.1499386	A	2.253737	A	0.465289843200439	0	lncRNA	11559-1_{1..713}	lnc-SH3BGRL2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SH3BGRL2-1:4	chr6	 80251220	 80251932	+	lnc-SH3BGRL2-1	lnc-SH3BGRL2-1:4	XLOC_005361	linc-SH3BGRL2-1	LCA5	NA	chr6:80241220-80247147	inter
CUST_974_PI429285431	0.8978385	A	0.8826895	A	1.01055581022007	0	lncRNA	963-1_{1..562}	"transcript_id ""ENST00000414965.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414965.1"" | genecode_v17"	chr2	101286354	101286915	-	ENSG00000234169.1	ENST00000414965.1	AC092168.3	AC092168.3-001	NA	NA	NA	inter
LNCA_21_P0006796	0.88749516	A	0.87751293	A	1.00694314723463	0	lncRNA	ENST00000414774	NA	NA	NA	NA	XLOC_008970	NA	ENST00000414774	NA	NA	"BROAD Institute lincRNA (XLOC_008970), lincRNA [TCONS_00018060]"	chr10:122685121-122685062	hs|10q26.12	Agilent_HUMAN_G3V2	ENST00000414774	ENST00000414774	chr10	122685062	122685121	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34849_PI429285431	0.91103095	A	0.9159605	A	0.996588927288283	0	lncRNA	36275-1_{1..2286}	n341752|AK055231|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4226|NULL|-0.9940890|-0.3839083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341752|AK055231|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4226|NULL|-0.9940890|-0.3839083	chr9	111843399	111845684	-	NA	NA	NA	NA	C9orf5	NA	chr9:111833399-111855685	inner
CUST_8635_PI429285431	3.6844015	P	3.4095163	P	1.20989780983176	0	lncRNA	10187-1_{1..3000}	lnc-C17orf65-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf65-1:1	chr17	 42264721	 42267720	-	lnc-C17orf65-1	lnc-C17orf65-1:1	ENSG00000251119	ENST00000509949	C17orf65	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TMUB2:range=chr17:42266415-422682325'pad=0,hg19_refFlat_TMUB2:range=chr17:42266415-422682325'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TMUB2:range=chr17:42265077-422682325'pad=0,hg19_refFlat_TMUB2:range=chr17:42265077-422682325'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00chr17:42254721-42264082"	NA	inner
LNCA_21_P0013777	0.881003	A	0.87818587	A	1.00195459344906	0	lncRNA	AL050285	NA	AL050285	NA	NA	ARMCX4	"armadillo repeat containing, X-linked 4"	NA	NA	GO:0016020|GO:0016021	"BROAD Institute lincRNA (XLOC_l2_015578), lincRNA [TCONS_l2_00030279]"	chrX:100789245-100789304	hs|Xq22.1	Agilent_HUMAN_G3V2	AL050285	AL050285	chrX	100789245	100789304	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00321355	4.1731634	P	4.4791646	P	0.808880675553428	0	lncRNA	ENST00000430555	NA	NA	NA	NA	XLOC_l2_007834	NA	ENST00000430555	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007834), lincRNA [TCONS_l2_00015633]"	chr2:242908420-242908479	hs|2q37.3	Agilent_HUMAN_G3V2	ENST00000430555	ENST00000430555	chr2	242908420	242908479	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012582	0.9244869	A	0.9412696	A	0.98843451916857	0	lncRNA	TCONS_l2_00020482	NA	NA	NA	NA	XLOC_l2_010636	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010636), lincRNA [TCONS_l2_00020482]"	chr4:37075919-37080253	hs|4p14	Agilent_HUMAN_G3V2	TCONS_l2_00020482	TCONS_l2_00020482	chr4	 37075919	 37080253	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21371_PI429285431	1.2120407	A	1.602726	A	0.762767193497239	0	lncRNA	22993-1_{1..705}	lnc-TOPBP1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TOPBP1-2:2	chr3	132975869	132976573	-	lnc-TOPBP1-2	lnc-TOPBP1-2:2	ENSG00000251011.1	RP11-402L6.1	TMEM108	NA	chr3:132965869-132985892	inner
CUST_8328_PI429285431	2.0760317	A	1.690769	A	1.3060975924401	0	lncRNA	9910-2_{3001..3329}	lnc-GAS2L2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GAS2L2-1:1	chr17	 34013123	 34013451	-	lnc-GAS2L2-1	lnc-GAS2L2-1:1	ENSG00000245181	ENST00000499128	AP2B1	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.30;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90chr17:34000123-34021922"	NA	inner
LNCA_21_P0004416	1.5723437	A	2.7311172	A	0.447893147780945	0	lncRNA	TCONS_00010383	NA	NA	NA	NA	XLOC_004900	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004900), lincRNA [TCONS_00010383]"	chr5:78623601-78623542	hs|5q14.1	Agilent_HUMAN_G3V2	TCONS_00010383	TCONS_00010383	chr5	 78623542	 78623601	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22584_PI429285431	4.696863	P	5.3792453	P	0.623135450490227	0	lncRNA	24169-1_{1..704}	lnc-C21orf2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C21orf2-1:2	chr21	 45749514	 45750217	-	lnc-C21orf2-1	lnc-C21orf2-1:2	ENSG00000241728.1	AP001062.8	PFKL	NA	chr21:45739514-45747261	inner
LNCA_21_P0009507	8.912257	P	9.566652	P	0.635341868594356	0	lncRNA	TCONS_00026381	NA	NA	NA	NA	XLOC_012732	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012732), lincRNA [TCONS_00026381]"	chr18:76400964-76401023	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026381	TCONS_00026381	chr18	 76400964	 76401023	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33064_PI429285431	0.9148901	A	0.91338027	A	1.00104708221584	0	lncRNA	34673-2_{3001..3826}	n339751|AK126698|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2197|NULL|-0.3294560|-0.2728142	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339751|AK126698|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2197|NULL|-0.3294560|-0.2728142	chr3	195445310	195446135	+	NA	NA	NA	NA	MUC20	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-51.12;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40chr3:195447753-195456106"	NA	inter
CUST_31267_PI429285431	4.0114207	P	2.265081	A	3.35506263484902	0	lncRNA	33057-1_{1..3000}	n337724|AK125664|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|106|NULL|-1.1525600|-0.3268759	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337724|AK125664|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|106|NULL|-1.1525600|-0.3268759	chrX	 54094776	 54097775	-	NA	NA	NA	NA	FAM120C	NA	chrX:54094757-54108372	inner
LNCA_21_P0010530	4.53937	P	4.4750614	P	1.04558373210446	0	lncRNA	ENST00000424308	NA	NA	NA	NA	XLOC_l2_000233	NA	ENST00000424308	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000233), lincRNA [TCONS_l2_00000307]"	chr1:59487204-59488669	hs|1p32.1	Agilent_HUMAN_G3V2	ENST00000424308	ENST00000424308	chr1	 59487204	 59488669	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19096_PI429285431	4.1505575	P	4.620844	P	0.721821239452916	0	lncRNA	20785-1_{1..798}	lnc-RNF214-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,NONCODERv3,"	>lnc-RNF214-1:1	chr11	117162061	117162858	+	lnc-RNF214-1	lnc-RNF214-1:1	BACE1AS	CB960709.1	BACE1	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BACE1:range=chr11:117160282-1171865115'pad=0,hg19_refFlat_BACE1:range=chr11:117160282-1171865115'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_BACE1:range=chr11:117160282-1171662635'pad=0,hg19_refFlat_BACE1:range=chr11:117160282-1171662635'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50chr11:117156402-117172857"	NA	inner
CUST_6885_PI429285431	0.90429115	A	1.5278014	A	0.649089691792899	0	lncRNA	6836-1_{1..2816}	"transcript_id ""ENST00000435702.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000435702.1"" | genecode_v17"	chr21	 44783212	 44786027	+	ENSG00000225637.1	ENST00000435702.1	AP001046.6	AP001046.6-001	NA	NA	NA	inter
CUST_3677_PI429285431	0.9452948	A	0.9099973	A	1.02476811999824	0	lncRNA	3645-1_{1..732}	"transcript_id ""ENST00000456722.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456722.1"" | genecode_v17"	chr10	 45086656	 45087387	-	ENSG00000234580.1	ENST00000456722.1	RP11-733D4.1	RP11-733D4.1-001	NA	NA	NA	inter
LNCA_21_P0010146	3.708781	P	3.8216228	P	0.9247646784423	0	lncRNA	ENST00000428205	NA	NA	NA	NA	XLOC_013877	NA	ENST00000428205	NA	NA	"BROAD Institute lincRNA (XLOC_013877), lincRNA [TCONS_00028804]"	chr21:22987561-22987620	hs|21q21.1	Agilent_HUMAN_G3V2	ENST00000428205	ENST00000428205	chr21	 22987561	 22987620	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4540_PI429285431	0.9043764	A	0.90152806	A	1.00197626909098	0	lncRNA	4488-1_{1..1035}	"transcript_id ""ENST00000542627.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000542627.1"" | genecode_v17"	chr12	133033746	133034780	+	ENSG00000256783.1	ENST00000542627.1	RP11-503G7.1	RP11-503G7.1-001	NA	NA	NA	inter
CUST_38677_PI429285431	1.619136	A	3.0561738	A	0.369324839102269	0	lncRNA	39676-1_{1..914}	n384004|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yqt.2||-0.0745351|-0.2420395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384004|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002yqt.2||-0.0745351|-0.2420395	chr21	 34144435	 34145348	+	NA	NA	NA	NA	C21orf62	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60chr21:34162984-34180014"	NA	inner
CUST_20399_PI429285431	3.7202241	A	4.4901257	P	0.586457472984107	0	lncRNA	22040-1_{1..308}	lnc-PSMB7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PSMB7-1:1	chr9	127023373	127023680	-	lnc-PSMB7-1	lnc-PSMB7-1:1	ENSG00000235204.1	RP11-121A14.2	NEK6	NA	chr9:127019885-127033435	inner
CUST_37057_PI429285431	0.8886595	A	0.88897717	A	0.999779832175645	0	lncRNA	38190-1_{1..3000}	n345507|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1056|NULL|-1.6319900|-0.3783258	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345507|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1056|NULL|-1.6319900|-0.3783258	chr2	192556794	192559793	+	NA	NA	NA	NA	OBFC2A	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20chr2:192546794-192553248"	NA	inter
CUST_43906_PI429285431	1.6448606	A	1.0900276	A	1.46899857865486	0	lncRNA	48620-1_{1..1071}	"gi|341915171|ref|XR_109917.2| PREDICTED: Homo sapiens uncharacterized LOC100506076, transcript variant 1 (LOC100506076), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915171|ref|XR_109917.2| PREDICTED: Homo sapiens uncharacterized LOC100506076, transcript variant 1 (LOC100506076), misc_RNA"	NA	NA	NA	NA	NA	XR_109917.2	NA	NA	NA	NA	NA	Unknown
CUST_1033_PI429285431	1.871918	A	2.3338232	A	0.726026845864668	0	lncRNA	1023-1_{1..529}	"transcript_id ""ENST00000436885.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436885.1"" | genecode_v17"	chr2	113348373	113348901	+	ENSG00000228251.1	ENST00000436885.1	AC012442.6	AC012442.6-001	CHCHD5	NA	chr2:113342036-113346617	inter
LNCA_21_P0003634	0.8855188	A	0.8851545	A	1.0002525454021	0	lncRNA	TCONS_00008185	NA	NA	NA	NA	XLOC_003634	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003634), lincRNA [TCONS_00008185]"	chr4:106280159-106280218	hs|4q24	Agilent_HUMAN_G3V2	TCONS_00008185	TCONS_00008185	chr4	106280159	106280218	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50705_PI429285431	4.675852	P	3.7411177	P	1.91153855622953	0	lncRNA	54376-1_{1..995}	hg19_lincRNAsTranscripts_TCONS_l2_00003118 range=chr10:79492934-79494076 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00003118 range=chr10:79492934-79494076 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr10	 79492934	 79493928	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38514_PI429285431	2.239027	A	2.9157352	A	0.625591059526226	0	lncRNA	39525-1_{1..3000}	n383104|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gza.2||1.0031700|-0.1581132	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n383104|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002gza.2||1.0031700|-0.1581132	chr17	 21904061	 21907060	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42230_PI429285431	8.2559395	P	8.622072	P	0.775859594504603	0	lncRNA	44342-1_{1..98}	ENST00000385239 ncrna:miRNA chromosome:GRCh37:1:168344762:168344859:1 gene:ENSG00000207974 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385239 ncrna:miRNA chromosome:GRCh37:1:168344762:168344859:1 gene:ENSG00000207974 gene_biotype:miRNA transcript_biotype:miRNA	chr1	168344762	168344859	+	ENSG00000207974	ENST00000385239	NA	NA	NA	NA	NA	inter
CUST_44143_PI429285431	3.2075438	A	3.400086	P	0.875062398086013	0	lncRNA	48806-1_{1..2125}	"gi|300069039|ref|NR_033965.1| Homo sapiens uncharacterized LOC440952 (FLJ33065), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300069039|ref|NR_033965.1| Homo sapiens uncharacterized LOC440952 (FLJ33065), non-coding RNA"	Chr3	 40214636	 40216760	-	440952	NR_033965.1	NA	NA	NA	NA	NA	inter
CUST_46151_PI429285431	7.975237	P	8.079215	P	0.930463846459451	0	lncRNA	50400-1_{1..2104}	"gi|218505818|ref|NR_024601.1| Homo sapiens diablo, IAP-binding mitochondrial protein (DIABLO), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|218505818|ref|NR_024601.1| Homo sapiens diablo, IAP-binding mitochondrial protein (DIABLO), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NR_024601.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006239	3.9527056	P	4.3997593	P	0.733539367770519	0	lncRNA	XR_109854	XR_109854	XR_109854	NA	NA	LOC100506532	uncharacterized LOC100506532	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506532 (LOC100506532), miscRNA [XR_109854]"	chr9:137436770-137436829	hs|9q34.3	Agilent_HUMAN_G3V2	XR_109854	XR_109854	chr9	137436770	137436829	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005250	0.8868293	A	3.876761	P	0.125875402803364	0	lncRNA	XR_108853	XR_108853	XR_108853	NA	NA	LOC100506507	uncharacterized LOC100506507	ENST00000429254	THC2645710	NA	"PREDICTED: Homo sapiens hypothetical LOC100506507 (LOC100506507), miscRNA [XR_108853]"	chr7:100944492-100944551	hs|7q22.1	Agilent_HUMAN_G3V2	XR_108853	XR_108853	chr7	100944492	100944551	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39317_PI429285431	4.542144	P	5.10329	P	0.677763570602706	0	lncRNA	40284-1_{1..2642}	n386352|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010iat.2||3.8585900|-0.3555227	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386352|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010iat.2||3.8585900|-0.3555227	chr3	197784403	197787044	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43665_PI429285431	2.1170828	A	1.2261003	A	1.85443859825399	0	lncRNA	48420-1_{1..2431}	"gi|208022671|ref|NR_002719.2| Homo sapiens topoisomerase (DNA) I pseudogene 1 (TOP1P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|208022671|ref|NR_002719.2| Homo sapiens topoisomerase (DNA) I pseudogene 1 (TOP1P1), non-coding RNA"	Chr1	171308035	171310465	+	7151	NR_002719.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0007943	0.8828193	A	1.0723926	A	0.876865029743255	0	lncRNA	ENST00000433664	NA	NA	NA	NA	XLOC_010420	NA	ENST00000433664	NA	NA	"BROAD Institute lincRNA (XLOC_010420), lincRNA [TCONS_00021563]"	chr13:69866116-69866175	hs|13q21.33	Agilent_HUMAN_G3V2	ENST00000433664	ENST00000433664	chr13	 69866116	 69866175	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22502_PI429285431	1.8845559	A	2.2624664	A	0.769551349004767	0	lncRNA	24089-1_{1..2127}	lnc-KIR3DL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIR3DL1-1:1	chr19	 55224598	 55226724	+	lnc-KIR3DL1-1	lnc-KIR3DL1-1:1	ENSG00000170858.5	AC006293.3	NA	NA	NA	inter
CUST_12646_PI429285431	0.91058874	A	1.1209991	A	0.864291357413945	0	lncRNA	14263-1_{1..3000}	lnc-GGTLC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GGTLC1-2:1	chr20	 24092361	 24095360	-	lnc-GGTLC1-2	lnc-GGTLC1-2:1	XLOC_013697	linc-GGTLC1-2	NA	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20"	NA	inter
CUST_8407_PI429285431	4.429858	P	5.3963604	P	0.511745210490869	0	lncRNA	9984-1_{1..300}	lnc-SEC16B.1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SEC16B.1-3:3	chr1	178062669	178062968	-	lnc-SEC16B.1-3	lnc-SEC16B.1-3:3	ENSG00000224687	RP11-21M7.1	RASAL2	NA	chr1:178062864-178072707	inter
LNCA_21_P0004470	6.3585677	P	6.7948036	P	0.739060359469503	0	lncRNA	TCONS_00010556	NA	NA	NA	NA	XLOC_005083	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005083), lincRNA [TCONS_00010556]"	chr5:172233592-172233533	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00010556	TCONS_00010556	chr5	172233533	172233592	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012401	1.4725251	A	2.1451235	A	0.6273757192218	0	lncRNA	TCONS_l2_00018865	NA	NA	NA	NA	XLOC_l2_009889	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009889), lincRNA [TCONS_l2_00018865]"	chr3:131089051-131089110	hs|3q22.1	Agilent_HUMAN_G3V2	TCONS_l2_00018865	TCONS_l2_00018865	chr3	131089051	131089110	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010071	4.4058247	P	5.1933656	P	0.579330730634512	0	lncRNA	TCONS_00028465	NA	NA	NA	NA	XLOC_013838	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013838), lincRNA [TCONS_00028465]"	chr20:61417108-61417049	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028465	TCONS_00028465	chr20	 61417049	 61417108	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011479	12.240048	P	12.593151	P	0.782898399887919	0	lncRNA	TCONS_l2_00010135	NA	NA	NA	NA	XLOC_l2_005465	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005465), lincRNA [TCONS_l2_00010135]"	chr16:33790472-33790413	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00010135	TCONS_l2_00010135	chr16	 33790413	 33790472	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38706_PI429285431	2.1360593	A	3.6763673	P	0.343812046495292	0	lncRNA	39701-1_{1..1085}	n384132|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003adm.1||-0.9729830|-0.3150118	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384132|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003adm.1||-0.9729830|-0.3150118	chr22	 28276021	 28277105	-	NA	NA	NA	NA	PITPNB	"hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-26.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-90.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20chr22:28266021-28287106"	NA	inner
CUST_34466_PI429285431	3.2722547	P	1.8435016	A	2.69213937167486	0	lncRNA	35937-1_{1..3000}	n341339|BX647377|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3808|NULL|-1.0231700|-0.2929093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341339|BX647377|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3808|NULL|-1.0231700|-0.2929093	chr7	139246315	139249314	-	NA	NA	NA	NA	HIPK2	NA	chr7:139246316-139261958	inner
LNCA_21_P0011764	5.52582	P	5.3621817	P	1.12010835512708	0	lncRNA	TCONS_l2_00013243	NA	NA	NA	NA	XLOC_l2_007135	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007135), lincRNA [TCONS_l2_00013243]"	chr19:56125127-56125068	hs|19q13.42	Agilent_HUMAN_G3V2	TCONS_l2_00013243	TCONS_l2_00013243	chr19	 56125068	 56125127	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35051_PI429285431	0.9098908	A	0.8971455	A	1.00887350696497	0	lncRNA	36461-1_{1..482}	n341998|AL365517|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4479|NULL|-1.3719500|-0.3524983	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341998|AL365517|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4479|NULL|-1.3719500|-0.3524983	chr12	100447868	100448349	-	NA	NA	NA	NA	UHRF1BP1L	NA	chr12:100437868-100458304	inner
CUST_16034_PI429285431	2.6006193	A	3.1303349	P	0.692691271560464	0	lncRNA	17732-1_{1..238}	lnc-HECA-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HECA-3:2	chr6	140388574	140388811	+	lnc-HECA-3	lnc-HECA-3:2	XLOC_005485	linc-VTA1-2	NA	NA	NA	inter
LNCA_21_P0007644	1.8772085	A	0.87792766	A	1.999003280992	0	lncRNA	TCONS_00020595	NA	NA	NA	NA	XLOC_009912	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009912), lincRNA [TCONS_00020595]"	chr12:121558379-121558438	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00020595	TCONS_00020595	chr12	121558379	121558438	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7401_PI429285431	1.5542017	A	2.4025261	A	0.555429458113736	0	lncRNA	9046-1_{1..563}	lnc-MARCKS-5:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MARCKS-5:15	chr6	114789659	114790221	+	lnc-MARCKS-5	lnc-MARCKS-5:15	ENSG00000228624	RP3-399L15.3	NA	NA	NA	inter
LNCA_21_P0009671	0.8842864	A	0.87636375	A	1.00550666877915	0	lncRNA	TCONS_00026845	NA	NA	NA	NA	XLOC_013299	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013299), lincRNA [TCONS_00026845]"	chr19:32594020-32583618	hs|19q13.11	Agilent_HUMAN_G3V2	TCONS_00026845	TCONS_00026845	chr19	 32583618	 32594020	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014410	3.741016	P	2.738572	A	2.00339097485099	0	lncRNA	ENST00000442637	XR_109638	XR_109638	NA	NA	LOC100507459	NA	ENST00000442637	THC2507846	NA	"PREDICTED: Homo sapiens hypothetical LOC100507459 (LOC100507459), miscRNA [XR_109638]"	chr20:301065-301006	hs|20p13	Agilent_HUMAN_G3V2	ENST00000442637	ENST00000442637	chr20	   301006	   301065	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011509	2.221839	A	2.2813995	A	0.95955639232283	0	lncRNA	AL832768	NA	AL832768	NA	Hs.378695	ALOX12P2	arachidonate 12-lipoxygenase pseudogene 2	NA	THC2502100	NA	"BROAD Institute lincRNA (XLOC_l2_005642), lincRNA [TCONS_l2_00010541]"	chr17:6804103-6804162	hs|17p13.1	Agilent_HUMAN_G3V2	AL832768	AL832768	chr17	  6804103	  6804162	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7765_PI429285431	1.4480772	A	0.92008376	A	1.44192231495894	0	lncRNA	9392-1_{1..589}	lnc-ALX4-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ALX4-8:1	chr11	 43290815	 43291403	-	lnc-ALX4-8	lnc-ALX4-8:1	ENSG00000251557	ENST00000533565	NA	NA	NA	inter
LNCA_21_P0010384	7.820425	P	7.810648	P	1.00679991513211	0	lncRNA	ENST00000454439	NA	NA	NA	NA	XLOC_014396	NA	ENST00000454439	NA	NA	"BROAD Institute lincRNA (XLOC_014396), lincRNA [TCONS_00029489]"	chr22:45831808-45831749	hs|22q13.31	Agilent_HUMAN_G3V2	ENST00000454439	ENST00000454439	chr22	 45831749	 45831808	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1226_PI429285431	0.8978265	A	0.88440526	A	1.00934630108757	0	lncRNA	1218-1_{1..769}	"transcript_id ""ENST00000434559.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434559.1"" | genecode_v17"	chr2	213660055	213660823	+	ENSG00000234308.1	ENST00000434559.1	AC093381.2	AC093381.2-002	NA	NA	NA	inter
LNCA_21_P0009173	4.7847657	P	4.3429527	P	1.35831021097499	0	lncRNA	ENST00000514468	NA	NA	NA	NA	XLOC_012241	NA	ENST00000514468	NA	NA	"BROAD Institute lincRNA (XLOC_012241), lincRNA [TCONS_00025185]"	chr17:48292694-48292753	hs|17q21.33	Agilent_HUMAN_G3V2	ENST00000514468	ENST00000514468	chr17	 48292694	 48292753	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011075	3.5376806	P	4.2644243	P	0.604266262250339	0	lncRNA	TCONS_l2_00006056	NA	NA	NA	NA	XLOC_l2_003260	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003260), lincRNA [TCONS_l2_00006056]"	chr12:3412092-3412033	hs|12p13.32	Agilent_HUMAN_G3V2	TCONS_l2_00006056	TCONS_l2_00006056	chr12	  3412033	  3412092	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7031_PI429285431	1.3539572	A	0.91742945	A	1.35334320485759	0	lncRNA	6976-1_{1..382}	"transcript_id ""ENST00000442155.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442155.1"" | genecode_v17"	chrX	 22716574	 22716955	+	ENSG00000237019.1	ENST00000442155.1	GS1-433O24.1	GS1-433O24.1-001	NA	NA	NA	inter
LNCA_21_P0013500	2.223385	A	2.0206978	A	1.15083994325838	0	lncRNA	THC2645076	NA	NA	NA	NA	XLOC_l2_014294	NA	NA	THC2645076	NA	"BROAD Institute lincRNA (XLOC_l2_014294), lincRNA [TCONS_l2_00027902]"	chr8:098203731-098203790	hs|8q22.1	Agilent_HUMAN_G3V2	THC2645076	THC2645076	chr8	 98203731	 98203790	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008384	0.8772452	A	0.876746	A	1.00034607894404	0	lncRNA	TCONS_00022623	NA	NA	NA	NA	XLOC_010923	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010923), lincRNA [TCONS_00022623]"	chr14:98576617-98576676	hs|14q32.2	Agilent_HUMAN_G3V2	TCONS_00022623	TCONS_00022623	chr14	 98576617	 98576676	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004310	2.2163854	A	2.997354	A	0.581975933665522	0	lncRNA	TCONS_00010121	NA	NA	NA	NA	XLOC_004587	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004587), lincRNA [TCONS_00010121]"	chr5:141756976-141757035	hs|5q31.3	Agilent_HUMAN_G3V2	TCONS_00010121	TCONS_00010121	chr5	141756976	141757035	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42607_PI429285431	6.207176	P	6.7225127	P	0.699629632320996	0	lncRNA	45469-1_{1..151}	ENST00000365504 ncrna:snoRNA chromosome:GRCh37:4:68612954:68613104:1 gene:ENSG00000202374 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365504 ncrna:snoRNA chromosome:GRCh37:4:68612954:68613104:1 gene:ENSG00000202374 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	 68612954	 68613104	+	ENSG00000202374	ENST00000365504	NA	NA	GNRHR	NA	chr4:68602954-68621804	inner
CUST_3979_PI429285431	5.0969253	P	5.905382	P	0.570992341294786	0	lncRNA	3943-7_{18001..21000}	"transcript_id ""ENST00000501122.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000501122.2"" | genecode_v17"	chr11	 65208269	 65211268	+	ENSG00000245532.3	ENST00000501122.2	NEAT1	NEAT1-001	FRMD8	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr11:65180269-65180996"	NA	inter
CUST_17209_PI429285431	1.0390121	A	0.92644143	A	1.08115297650354	0	lncRNA	18923-1_{1..314}	lnc-RP11-80A15.1.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-80A15.1.1-5:1	chr14	 25719262	 25719575	+	lnc-RP11-80A15.1.1-5	lnc-RP11-80A15.1.1-5:1	XLOC_010775	linc-FOXG1-6	NA	NA	NA	inter
CUST_42500_PI429285431	4.2079453	P	4.3561563	P	0.902368742723197	0	lncRNA	45273-1_{1..133}	ENST00000517219 ncrna:snoRNA chromosome:GRCh37:7:52337133:52337265:-1 gene:ENSG00000253028 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517219 ncrna:snoRNA chromosome:GRCh37:7:52337133:52337265:-1 gene:ENSG00000253028 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 52337133	 52337265	-	ENSG00000253028	ENST00000517219	NA	NA	NA	NA	NA	inter
LNCA_21_P0008292	2.1703348	A	1.2086197	A	1.94762388695511	0	lncRNA	ENST00000553648	NA	AK127576	NA	Hs.525335	XLOC_011019	NA	ENST00000553648	THC2512664	NA	"BROAD Institute lincRNA (XLOC_011019), lincRNA [TCONS_00022409]"	chr14:51424106-51424047	hs|14q22.1	Agilent_HUMAN_G3V2	ENST00000553648	ENST00000553648	chr14	 51424047	 51424106	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012606	0.927148	A	0.9815665	A	0.962982509516015	0	lncRNA	THC2643481	NA	NA	NA	NA	XLOC_l2_010815	NA	NA	THC2643481	NA	"BROAD Institute lincRNA (XLOC_l2_010815), lincRNA [TCONS_l2_00020729]"	chr4:120885332-120885391	hs|4q27	Agilent_HUMAN_G3V2	THC2643481	THC2643481	chr4	120885332	120885391	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38891_PI429285431	6.646874	P	6.8245673	P	0.884115463637453	0	lncRNA	39877-1_{1..1200}	n384841|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003nim.2||2.2609300|-0.2037699	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n384841|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003nim.2||2.2609300|-0.2037699	chr6	 26839265	 26840464	-	NA	NA	NA	NA	LOC100507141	NA	chr6:26864941-26865525	inter
LNCA_21_P0008634	0.90010214	A	0.9106664	A	0.992704157786491	0	lncRNA	TCONS_00023414	NA	NA	NA	NA	XLOC_011259	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011259), lincRNA [TCONS_00023414]"	chr15:53393014-53393747	hs|15q21.3	Agilent_HUMAN_G3V2	TCONS_00023414	TCONS_00023414	chr15	 53393014	 53393747	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002195	2.4680083	A	2.8824496	A	0.750310004437739	0	lncRNA	TCONS_00003626	NA	NA	NA	NA	XLOC_001418	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001418), lincRNA [TCONS_00003626]"	chr2:33050552-33061734	hs|2p22.3	Agilent_HUMAN_G3V2	TCONS_00003626	TCONS_00003626	chr2	 33050552	 33061734	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18919_PI429285431	7.896782	P	8.85652	P	0.514150276885632	0	lncRNA	20610-1_{1..305}	lnc-FAM127B-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FAM127B-1:5	chrX	134229530	134229834	-	lnc-FAM127B-1	lnc-FAM127B-1:5	ENSG00000196972	NCRNA00087	NA	NA	NA	inter
CUST_27029_PI429285431	2.6157424	A	2.7652583	A	0.901552930245901	0	lncRNA	28560-1_{1..395}	n324135|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001034|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001034|-0.2809410|-0.3611745	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324135|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000001034|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000001034|-0.2809410|-0.3611745	chr9	 33502956	 33503350	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-26.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.70;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-59.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-28.20"	NA	inter
LNCA_21_P0002342	4.2559114	P	4.349298	P	0.937319888533773	0	lncRNA	TCONS_00004008	NA	NA	NA	NA	XLOC_001833	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001833), lincRNA [TCONS_00004008]"	chr2:213681706-213683918	hs|2q34	Agilent_HUMAN_G3V2	TCONS_00004008	TCONS_00004008	chr2	213681706	213683918	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31197_PI429285431	1.3313472	A	1.4959491	A	0.892174673824383	0	lncRNA	32991-1_{1..1634}	n337639|BC040915|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|18|NULL|-0.8155770|-0.2693712	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337639|BC040915|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|18|NULL|-0.8155770|-0.2693712	chrX	 17546557	 17548190	+	NA	NA	NA	NA	NHS	NA	chrX:17536557-17615281	inner
CUST_17402_PI429285431	0.8935724	A	0.8974518	A	0.997314616936881	0	lncRNA	19125-1_{1..1121}	lnc-AC092327.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AC092327.1-2:2	chr16	 86337709	 86338829	-	lnc-AC092327.1-2	lnc-AC092327.1-2:2	XLOC_012044	linc-COX4NB-7	NA	NA	NA	inter
CUST_48274_PI429285431	8.282972	P	8.881594	P	0.660384424923738	0	lncRNA	52135-1_{1..2924}	hg19_lincRNAsTranscripts_TCONS_l2_00001041 range=chr1:16944369-16961662 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,ncbi,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001041 range=chr1:16944369-16961662 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 16944369	 16947292	-	NA	NA	NA	NA	NBPF1	"hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70chr1:16934369-16939982"	NA	inter
LNCA_21_P0012984	4.610121	P	4.581253	P	1.0202113103077	0	lncRNA	ENST00000508945	NA	NA	NA	NA	XLOC_l2_012023	NA	ENST00000508945	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012023), lincRNA [TCONS_l2_00023728]"	chr5:44747746-44746099	hs|5p12	Agilent_HUMAN_G3V2	ENST00000508945	ENST00000508945	chr5	 44746099	 44747746	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15509_PI429285431	7.905362	P	8.501734	P	0.661415151570745	0	lncRNA	17198-1_{1..370}	lnc-SLC25A6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC25A6-1:1	chrX	  1518260	  1518629	-	lnc-SLC25A6-1	lnc-SLC25A6-1:1	XLOC_008099	linc-SLC25A6-2	SLC25A6	"hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70chrX:1508260-1511039"	NA	inter
LNCA_21_P0006346	5.815694	P	5.9535313	P	0.908880609721891	0	lncRNA	TCONS_00016564	NA	NA	NA	NA	XLOC_007326	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007326), lincRNA [TCONS_00016564]"	chr9:33733270-33733329	hs|9p13.3	Agilent_HUMAN_G3V2	TCONS_00016564	TCONS_00016564	chr9	 33733270	 33733329	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_710_PI429285431	0.8980319	A	0.8984278	A	0.999725620680109	0	lncRNA	703-1_{1..720}	"transcript_id ""ENST00000586129.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586129.1"" | genecode_v17"	chr2	  6776765	  6777484	-	ENSG00000236172.2	ENST00000586129.1	AC097517.2	AC097517.2-008	NA	NA	NA	inter
LNCA_21_P0005657	4.132367	P	4.3905773	P	0.836124510120382	0	lncRNA	ENST00000510244	NA	NA	NA	NA	XLOC_006721	NA	ENST00000510244	NA	NA	"BROAD Institute lincRNA (XLOC_006721), lincRNA [TCONS_00015231]"	chr3:125627056-125626997	hs|3q21.2	Agilent_HUMAN_G3V2	ENST00000510244	ENST00000510244	chr3	125626997	125627056	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12676_PI429285431	0.9152758	A	0.8965442	A	1.0130684106667	0	lncRNA	14293-1_{1..265}	lnc-MED10-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MED10-4:1	chr5	  5932571	  5932835	-	lnc-MED10-4	lnc-MED10-4:1	XLOC_004723	linc-IRX2-2	NA	NA	NA	inter
LNCA_21_P0011068	8.620707	P	8.682207	P	0.958267270807536	0	lncRNA	XR_109143	XR_109143	XR_109143	NA	NA	LOC100506691	uncharacterized LOC100506691	NA	THC2661773	NA	"PREDICTED: Homo sapiens hypothetical LOC100506691 (LOC100506691), miscRNA [XR_109143]"	chr12:122506336-122506395	hs|12q24.31	Agilent_HUMAN_G3V2	XR_109143	XR_109143	chr12	122506336	122506395	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21782_PI429285431	1.1619838	A	1.0249066	A	1.09967499240727	0	lncRNA	23392-1_{1..2026}	lnc-THSD4-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THSD4-3:7	chr15	 72109893	 72111918	+	lnc-THSD4-3	lnc-THSD4-3:7	ENSG00000031544.9	NR2E3	MYO9A	NA	chr15:72118351-72120585	inner
CUST_27246_PI429285431	2.7273822	A	3.3724546	P	0.639460699229919	0	lncRNA	28795-1_{1..512}	n324388|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042242|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042242|-1.0984500|-0.3007386	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324388|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042242|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042242|-1.0984500|-0.3007386	chr6	132523596	132524107	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34587_PI429285431	3.5098815	P	3.985286	P	0.719265095597576	0	lncRNA	36045-1_{1..765}	n341471|BC039440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3941|NULL|-1.0669000|-0.1472564	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341471|BC039440|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3941|NULL|-1.0669000|-0.1472564	chr8	 29209935	 29210699	-	NA	NA	NA	NA	DUSP4	NA	chr8:29199935-29208267	inter
LNCA_21_P0005580	2.1240764	A	2.6262932	A	0.706021097387794	0	lncRNA	TCONS_00014226	NA	NA	NA	NA	XLOC_006281	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006281), lincRNA [TCONS_00014226]"	chr7:144087991-144088050	hs|7q35	Agilent_HUMAN_G3V2	TCONS_00014226	TCONS_00014226	chr7	144087991	144088050	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20622_PI429285431	1.4920692	A	1.9191831	A	0.743748160380781	0	lncRNA	22261-1_{1..505}	lnc-ANP32A-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANP32A-3:3	chr15	 69706491	 69706995	-	lnc-ANP32A-3	lnc-ANP32A-3:3	ENSG00000259426.1	RP11-253M7.1	PAQR5	NA	chr15:69696491-69699976	inter
CUST_17567_PI429285431	2.7426996	A	1.7676027	A	1.96577322570592	0	lncRNA	19296-1_{1..557}	lnc-FBN2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FBN2-4:1	chr5	127038419	127038975	-	lnc-FBN2-4	lnc-FBN2-4:1	XLOC_004991	linc-FLJ44606-4	NA	NA	NA	inter
LNCA_21_P0009002	6.3686934	P	6.1865606	P	1.13455991630798	0	lncRNA	BC012429	NA	BC012429	NA	Hs.364739	XLOC_011865	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011865), lincRNA [TCONS_00024950]"	chr16:4000337-4000278	hs|16p13.3	Agilent_HUMAN_G3V2	BC012429	BC012429	chr16	  4000278	  4000337	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11618_PI429285431	0.9280449	A	0.92228734	A	1.00399881047292	0	lncRNA	13198-1_{1..541}	lnc-PLCE1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLCE1-1:1	chr10	 95752977	 95753517	+	lnc-PLCE1-1	lnc-PLCE1-1:1	XLOC_008567	linc-PLCE1-1	PLCE1	NA	chr10:95753746-95763461	inter
LNCA_21_P0012870	2.429671	A	2.8922138	A	0.725706048727265	0	lncRNA	TCONS_l2_00022663	NA	NA	NA	NA	XLOC_l2_011873	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011873), lincRNA [TCONS_l2_00022663]"	chr5:177375650-177378739	hs|5q35.3	Agilent_HUMAN_G3V2	TCONS_l2_00022663	TCONS_l2_00022663	chr5	177375650	177378739	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008614	0.9107224	A	0.92463636	A	0.990401936142163	0	lncRNA	TCONS_00023356	NA	NA	NA	NA	XLOC_011213	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011213), lincRNA [TCONS_00023356]"	chr15:38352417-38352476	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00023356	TCONS_00023356	chr15	 38352417	 38352476	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002506	9.236832	P	9.198267	P	1.02709170499793	0	lncRNA	TCONS_00004454	NA	NA	NA	NA	XLOC_002331	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002331), lincRNA [TCONS_00004454]"	chr2:134785970-134785911	hs|2q21.2	Agilent_HUMAN_G3V2	TCONS_00004454	TCONS_00004454	chr2	134785911	134785970	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005416	0.8886714	A	0.8922074	A	0.997552032740238	0	lncRNA	TCONS_00013564	NA	NA	NA	NA	XLOC_006209	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006209), lincRNA [TCONS_00013564]"	chr7:112256637-112257173	hs|7q31.1	Agilent_HUMAN_G3V2	TCONS_00013564	TCONS_00013564	chr7	112256637	112257173	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008854	3.4722955	P	3.7260344	P	0.838719962856207	0	lncRNA	TCONS_00024155	NA	NA	NA	NA	XLOC_011523	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011523), lincRNA [TCONS_00024155]"	chr15:72766270-72764370	hs|15q24.1	Agilent_HUMAN_G3V2	TCONS_00024155	TCONS_00024155	chr15	 72764370	 72766270	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009028	1.2061348	A	0.890663	A	1.24441854502674	0	lncRNA	TCONS_00024644	NA	NA	NA	NA	XLOC_011937	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011937), lincRNA [TCONS_00024644]"	chr16:51231685-51231626	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00024644	TCONS_00024644	chr16	 51231626	 51231685	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013279	0.88696384	A	1.8839324	A	0.50105172161421	0	lncRNA	TCONS_l2_00026280	NA	NA	NA	NA	XLOC_l2_013650	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013650), lincRNA [TCONS_l2_00026280]"	chr7:150103540-150103599	hs|7q36.1	Agilent_HUMAN_G3V2	TCONS_l2_00026280	TCONS_l2_00026280	chr7	150103540	150103599	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002972	0.88494694	A	0.88249564	A	1.00170055599186	0	lncRNA	TCONS_00006086	NA	NA	NA	NA	XLOC_002697	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002697), lincRNA [TCONS_00006086]"	chr3:70221599-70221658	hs|3p13	Agilent_HUMAN_G3V2	TCONS_00006086	TCONS_00006086	chr3	 70221599	 70221658	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013560	7.717411	P	7.87895	P	0.89407080886293	0	lncRNA	TCONS_l2_00028699	NA	NA	NA	NA	XLOC_l2_014757	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014757), lincRNA [TCONS_l2_00028699]"	chr9:35471893-35471952	hs|9p13.3	Agilent_HUMAN_G3V2	TCONS_l2_00028699	TCONS_l2_00028699	chr9	 35471893	 35471952	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47640_PI429285431	0.9094294	A	1.3598998	A	0.731804199600994	0	lncRNA	51628-1_{1..2434}	"gi|224493819|ref|NR_027131.1| Homo sapiens NFKB activating protein pseudogene 1 (NKAPP1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224493819|ref|NR_027131.1| Homo sapiens NFKB activating protein pseudogene 1 (NKAPP1), non-coding RNA"	NW_004070886.1	   288882	   291315	-	158801	NR_027131.1	NA	NA	NA	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0,hg19_refFlat_UPP2:range=chr2:158851711-1589914025'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10"	NA	Unknown
CUST_50886_PI429285431	1.3105304	A	1.3873328	A	0.948156821371651	0	lncRNA	54529-1_{1..1187}	hg19_lincRNAsTranscripts_TCONS_l2_00005791 range=chr12:80730205-80749721 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00005791 range=chr12:80730205-80749721 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr12	 80730205	 80731391	+	NA	NA	NA	NA	OTOGL	NA	chr12:80720205-80759721	inner
LNCA_21_P0005148	2.1661434	A	2.1920428	A	0.982208082840716	0	lncRNA	TCONS_00012634	NA	NA	NA	NA	XLOC_005563	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005563), lincRNA [TCONS_00012634]"	chr6:170491327-170491386	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012634	TCONS_00012634	chr6	170491327	170491386	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4717_PI429285431	4.660669	P	4.6470027	P	1.00951776588542	0	lncRNA	4663-1_{1..2239}	"transcript_id ""ENST00000551881.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551881.2"" | genecode_v17"	chr14	 19650078	 19652316	+	ENSG00000225210.5	ENST00000551881.2	AL589743.1	AL589743.1-008	NA	NA	NA	inter
CUST_51511_PI429285431	8.132137	P	8.396952	P	0.832305456252175	0	lncRNA	55086-1_{1..2633}	hg19_lincRNAsTranscripts_TCONS_l2_00010367 range=chr16:89262750-89267436 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010367 range=chr16:89262750-89267436 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	 89262750	 89265382	-	NA	NA	NA	NA	CDH15	NA	chr16:89252750-89261900	inner
LNCA_21_P0006480	0.88661903	A	0.9303397	A	0.970149729446705	0	lncRNA	TCONS_00017137	NA	NA	NA	NA	XLOC_007926	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007926), lincRNA [TCONS_00017137]"	chrX:8422949-8423718	hs|Xp22.31	Agilent_HUMAN_G3V2	TCONS_00017137	TCONS_00017137	chrX	  8422949	  8423718	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25648_PI429285431	0.90350676	A	0.8907249	A	1.00889907361746	0	lncRNA	27177-1_{1..461}	lnc-DTHD1-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-DTHD1-5:2	chr4	 33981362	 33981822	+	lnc-DTHD1-5	lnc-DTHD1-5:2	ENSG00000250723.1	RP11-79E3.2	NA	NA	NA	inter
CUST_29777_PI429285431	3.1255147	A	3.7352731	P	0.655306433212556	0	lncRNA	31540-1_{1..779}	n333474|BC027891|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091396|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091396|-0.8966020|-0.0681700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333474|BC027891|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000091396|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000091396|-0.8966020|-0.0681700	chr18	 19749416	 19750194	-	NA	NA	NA	NA	GATA6	"hg19_refFlat_GATA6:range=chr18:19751106-197807865'pad=0,hg19_refFlat_GATA6:range=chr18:19751106-197807865'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.10chr18:19749416-19761621"	NA	inner
CUST_49131_PI429285431	6.57134	P	6.8985953	P	0.797051417462373	0	lncRNA	52958-1_{1..443}	hg19_lincRNAsTranscripts_TCONS_l2_00020646 range=chr4:90602647-90641106 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020646 range=chr4:90602647-90641106 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 90602647	 90603089	+	NA	NA	NA	NA	SNCA	NA	chr4:90645250-90651106	inter
LNCA_21_P0008967	0.8865086	A	1.8960127	A	0.496716955735037	0	lncRNA	TCONS_00024452	NA	NA	NA	NA	XLOC_011775	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011775), lincRNA [TCONS_00024452]"	chr16:71551650-71551709	hs|16q22.2	Agilent_HUMAN_G3V2	TCONS_00024452	TCONS_00024452	chr16	 71551650	 71551709	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47122_PI429285431	10.414474	P	10.500622	P	0.942034629587899	0	lncRNA	51203-1_{1..2009}	"gi|300797722|ref|NR_034146.1| Homo sapiens sirtuin 2 (SIRT2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|300797722|ref|NR_034146.1| Homo sapiens sirtuin 2 (SIRT2), transcript variant 4, non-coding RNA"	Chr19	 39369195	 39371203	-	22933	NR_034146.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0010589	1.9679041	A	2.7362788	A	0.587078488459132	0	lncRNA	TCONS_l2_00000958	NA	NA	NA	NA	XLOC_l2_000720	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000720), lincRNA [TCONS_l2_00000958]"	chr1:165905-112767	hs|1p36.33	Agilent_HUMAN_G3V2	TCONS_l2_00000958	TCONS_l2_00000958	chr1	   112767	   165905	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002303	0.92734003	A	0.97576886	A	0.966988856894364	0	lncRNA	TCONS_00003913	NA	NA	NA	NA	XLOC_001718	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001718), lincRNA [TCONS_00003913]"	chr2:157722116-157722175	hs|2q24.1	Agilent_HUMAN_G3V2	TCONS_00003913	TCONS_00003913	chr2	157722116	157722175	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_193_PI429201921	3.508727	P	3.7012613	P	0.875067189820701	0	lncRNA	156-2_{3001..4956}	TC01004098.hg.1	 TCONS_l2_00001922-XLOC_l2_000001 // Broad TUCP // linc-OR4F16-4 chr1:+:134772-139697 // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00001923-XLOC_l2_000001 // Broad TUCP // linc-OR4F16-4 chr1:+:134772-139697 // chr1 // 100 // 100 // 0 // --- // 0/// TCONS_l2_00000001-XLOC_l2_000001 // Broad TUCP // linc-OR4F16-4 chr1:+:134766-139723 // chr1 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00000002-XLOC_l2_000001 // Broad TUCP // linc-OR4F16-4 chr1:+:134766-139723 // chr1 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:134766-139723	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00000002-XLOC_l2_000001	linc-OR4F16-4	chr1	   134766	   139723	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33891_PI429285431	1.8583425	A	1.6820835	A	1.12995005078068	0	lncRNA	35434-1_{1..1184}	n340682|AF010235|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3145|NULL|-1.0782100|-0.3474026	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340682|AF010235|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3145|NULL|-1.0782100|-0.3474026	chr5	150870772	150871955	-	NA	NA	NA	NA	SLC36A1	NA	chr5:150860772-150871940	inner
LNCA_21_P0010829	0.92412174	A	0.9763372	A	0.964454136950839	0	lncRNA	TCONS_l2_00003054	NA	NA	NA	NA	XLOC_l2_001597	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001597), lincRNA [TCONS_l2_00003054]"	chr10:52391440-52391499	hs|10q11.23	Agilent_HUMAN_G3V2	TCONS_l2_00003054	TCONS_l2_00003054	chr10	 52391440	 52391499	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_741_PI429285431	1.0799555	A	1.4048426	A	0.798360860692456	0	lncRNA	733-1_{1..1947}	"transcript_id ""ENST00000474667.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000474667.1"" | genecode_v17"	chr2	  9897625	  9899571	-	ENSG00000243491.1	ENST00000474667.1	RP11-521D12.5	RP11-521D12.5-001	NA	NA	NA	inter
CUST_8209_PI429285431	3.4259317	P	3.7216747	P	0.814652671415115	0	lncRNA	9802-1_{1..2110}	lnc-RPIA-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPIA-1:6	chr2	 89104893	 89107002	+	lnc-RPIA-1	lnc-RPIA-1:6	ENSG00000230006	ANKRD36BP2	NA	NA	NA	inter
CUST_30755_PI429285431	0.92920625	A	1.2560538	A	0.797276720549831	0	lncRNA	32540-1_{1..390}	n336575|Z18320|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326553|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326553|1.7285800|-0.0839571	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336575|Z18320|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326553|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326553|1.7285800|-0.0839571	chr14	106330797	106331186	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49554_PI429285431	1.4336944	A	1.7698003	A	0.792176659628298	0	lncRNA	53344-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00024305 range=chr6:80773211-80780323 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024305 range=chr6:80773211-80780323 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 80776211	 80779210	+	NA	NA	NA	NA	NA	"hg19_refFlat_ARHGAP21:range=chr10:24873341-250108285'pad=0,hg19_refFlat_ARHGAP21:range=chr10:24873341-250108285'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80"	NA	inter
CUST_21745_PI429285431	1.3398725	A	2.4649417	A	0.458480029720427	0	lncRNA	23355-1_{1..411}	lnc-C17orf97-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf97-4:1	chr17	   172053	   172463	+	lnc-C17orf97-4	lnc-C17orf97-4:1	ENSG00000262920.1	RP11-1260E13.1	RPH3AL	NA	chr17:162053-182244	inner
CUST_24013_PI429285431	0.91102713	A	0.91232836	A	0.999098462723383	0	lncRNA	25566-1_{1..830}	lnc-CTBP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTBP2-1:1	chr10	126634878	126635707	-	lnc-CTBP2-1	lnc-CTBP2-1:1	ENSG00000226899.1	RP11-298J20.3	ZRANB1	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00chr10:126630692-126645001"	NA	inner
CUST_19452_PI429285431	0.9042404	A	0.9110339	A	0.995302174094873	0	lncRNA	21111-1_{1..600}	lnc-TMEM114-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM114-2:1	chr16	  8345543	  8346142	-	lnc-TMEM114-2	lnc-TMEM114-2:1	ENSG00000260003.1	RP11-279O17.2	NA	NA	NA	inter
CUST_36856_PI429285431	2.062114	A	2.3972158	A	0.792728197846025	0	lncRNA	38016-1_{1..2721}	n345324|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_873|NULL|-1.3174400|-0.1986446	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345324|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_873|NULL|-1.3174400|-0.1986446	chr16	 87807093	 87809813	-	NA	NA	NA	NA	KLHDC4	"hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40chr16:87797093-87799598"	NA	inter
CUST_33472_PI429285431	2.4420214	A	1.727438	A	1.64100928296139	0	lncRNA	35045-1_{1..1702}	n340207|BC030136|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2668|NULL|-1.1312300|-0.1380668	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340207|BC030136|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2668|NULL|-1.1312300|-0.1380668	chr4	121843096	121844797	+	NA	NA	NA	NA	PRDM5	"hg19_refFlat_PRDM5:range=chr4:121616266-1218437635'pad=0,hg19_refFlat_PRDM5:range=chr4:121616266-1218437635'pad=0 3'pad=0 strand=- repeatMasking=none,-97.30chr4:121833096-121844013"	NA	inner
CUST_26983_PI429285431	1.4110748	A	1.2513285	A	1.11709067879475	0	lncRNA	28509-1_{1..398}	n324073|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052579|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052579|-1.3528700|-0.4745696	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324073|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052579|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052579|-1.3528700|-0.4745696	chr9	 71232983	 71233380	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25558_PI429285431	4.9483237	P	4.41714	P	1.44511439426806	0	lncRNA	27087-1_{1..344}	lnc-POLD3-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POLD3-4:2	chr11	 74196670	 74197013	+	lnc-POLD3-4	lnc-POLD3-4:2	ENSG00000254631.1	RP11-702H23.4	LIPT2	NA	chr11:74202923-74204755	inter
CUST_37877_PI429285431	1.21813	A	1.0982729	A	1.08662722597315	0	lncRNA	38968-1_{1..2253}	n346412|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1962|NULL|-1.3175200|-0.2420100	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346412|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1962|NULL|-1.3175200|-0.2420100	chr6	  4599527	  4601779	-	NA	NA	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.91;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50"	NA	inter
CUST_38019_PI429285431	6.001056	P	6.0289087	P	0.980879147205666	0	lncRNA	39105-1_{1..3000}	n377593|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029962||0.3799460|-0.3143183	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377593|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029962||0.3799460|-0.3143183	chr6	  2319162	  2322161	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56071306-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60"	NA	inter
CUST_17211_PI429285431	1.1435865	A	0.8822584	A	1.19858157367326	0	lncRNA	18925-1_{1..2378}	lnc-TMEM132C-6:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132C-6:5	chr12	127636635	127639012	+	lnc-TMEM132C-6	lnc-TMEM132C-6:5	XLOC_009944	linc-TMEM132C-5	NA	NA	NA	inter
CUST_15524_PI429285431	7.754795	P	7.793943	P	0.973229529523951	0	lncRNA	17210-1_{1..745}	lnc-RPAP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RPAP1-1:2	chr15	 41904733	 41905477	-	lnc-RPAP1-1	lnc-RPAP1-1:2	XLOC_011451	linc-RPAP1	NA	NA	NA	inter
LNCA_21_P0002962	5.745272	P	6.0662804	P	0.800510149723366	0	lncRNA	TCONS_00006033	NA	NA	NA	NA	XLOC_002674	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002674), lincRNA [TCONS_00006033]"	chr3:58165854-58172507	hs|3p14.3	Agilent_HUMAN_G3V2	TCONS_00006033	TCONS_00006033	chr3	 58165854	 58172507	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25823_PI429285431	0.89113456	A	1.4692017	A	0.669860626580531	0	lncRNA	27344-1_{1..708}	lnc-ITPR2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ITPR2-2:2	chr12	 26424596	 26425303	-	lnc-ITPR2-2	lnc-ITPR2-2:2	ENSG00000255750.1	RP11-283G6.5	NA	NA	NA	inter
LNCA_19_P00321636	2.9723067	P	1.8901178	A	2.11724599426989	0	lncRNA	THC2548196	NA	NA	NA	NA	XLOC_014192	NA	NA	THC2548196	NA	"BROAD Institute lincRNA (XLOC_014192), lincRNA [TCONS_00029547]"	chr22:027122616-027122675	hs|22q12.1	Agilent_HUMAN_G3V2	THC2548196	THC2548196	chr22	 27122616	 27122675	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11103_PI429285431	2.3391292	A	2.2688253	A	1.04993782703361	0	lncRNA	12658-2_{3001..3330}	lnc-SCIMP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SCIMP-1:1	chr17	  5147295	  5147624	-	lnc-SCIMP-1	lnc-SCIMP-1:1	XLOC_012366	linc-C17orf87	C17orf87	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr17:5134295-5138083"	NA	inter
CUST_31893_PI429285431	3.2723398	P	4.055874	P	0.580941903211602	0	lncRNA	33624-2_{3001..3510}	n338447|BC037533|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|844|NULL|-1.0351200|-0.2573086	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n338447|BC037533|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|844|NULL|-1.0351200|-0.2573086	chr1	200996088	200996597	+	NA	NA	NA	NA	KIF21B	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-46.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40chr1:200983088-200992828"	NA	inter
LNCA_21_P0010136	4.726967	P	4.8536267	P	0.915949713312366	0	lncRNA	ENST00000424890	NA	BC033260	NA	Hs.399886	XLOC_014093	NA	ENST00000424890	NA	NA	"BROAD Institute lincRNA (XLOC_014093), lincRNA [TCONS_00028786]"	chr21:44068756-44068697	hs|21q22.3	Agilent_HUMAN_G3V2	ENST00000424890	ENST00000424890	chr21	 44068697	 44068756	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25903_PI429285431	2.7368696	A	2.3732827	A	1.28662078471326	0	lncRNA	27422-1_{1..826}	lnc-ZNF33A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF33A-2:1	chr10	 38148006	 38148831	+	lnc-ZNF33A-2	lnc-ZNF33A-2:1	ENSG00000236514.1	RP11-162G10.5	ZNF248	NA	chr10:38138006-38146486	inter
CUST_30211_PI429285431	5.835775	P	6.8287377	P	0.502444900450292	0	lncRNA	31986-1_{1..413}	n335058|AJ566380|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248860|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248860|-0.9047300|-0.2316963	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335058|AJ566380|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248860|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248860|-0.9047300|-0.2316963	chr21	 45958780	 45959192	-	NA	NA	NA	NA	TSPEAR	NA	chr21:45948780-45969193	inner
CUST_26317_PI429285431	0.8989315	A	0.8865874	A	1.00859298768352	0	lncRNA	27824-1_{1..535}	lnc-GPR146-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GPR146-1:1	chr7	  1083055	  1083589	+	lnc-GPR146-1	lnc-GPR146-1:1	ENSG00000225146.1	AC073957.15	C7orf50	NA	chr7:1073055-1093527	inner
LNCA_21_P0010235	1.0873665	A	0.9748961	A	1.0810778369635	0	lncRNA	TCONS_00029002	NA	NA	NA	NA	XLOC_013917	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013917), lincRNA [TCONS_00029002]"	chr21:34261012-34261071	hs|21q22.11	Agilent_HUMAN_G3V2	TCONS_00029002	TCONS_00029002	chr21	 34261012	 34261071	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8214_PI429285431	0.9266659	A	1.9979702	A	0.475888567014999	0	lncRNA	9806-2_{3001..3266}	lnc-C20orf118-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C20orf118-1:1	chr20	 35424523	 35424788	+	lnc-C20orf118-1	lnc-C20orf118-1:1	ENSG00000250861	ENST00000509795	KIAA0889	"hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_SOGA1:range=chr20:35414888-354917475'pad=0,hg19_refFlat_SOGA1:range=chr20:35414888-354917475'pad=0 3'pad=0 strand=- repeatMasking=none,-108.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-56.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-54.50;hg19_refFlat_SOGA1:range=chr20:35406177-354678175'pad=0,hg19_refFlat_SOGA1:range=chr20:35406177-354678175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80chr20:35411523-35433205"	NA	inner
CUST_12048_PI429285431	0.9114757	A	1.4845176	A	0.672197974236542	0	lncRNA	13633-1_{1..352}	lnc-RPRM-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RPRM-4:2	chr2	155345296	155345647	-	lnc-RPRM-4	lnc-RPRM-4:2	XLOC_002360	linc-RPRM-2	NA	NA	NA	inter
CUST_1044_PI429285431	2.8558185	A	3.1679688	A	0.805440375882219	0	lncRNA	1034-1_{1..580}	"transcript_id ""ENST00000449075.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000449075.1"" | genecode_v17"	chr2	118940515	118941094	-	ENSG00000226856.1	ENST00000449075.1	AC093901.1	AC093901.1-002	NA	NA	NA	inter
CUST_8575_PI429285431	3.0611007	A	3.398336	A	0.791556754389925	0	lncRNA	10133-1_{1..3000}	lnc-FBXO25-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXO25-1:1	chr8	   599416	   602415	+	lnc-FBXO25-1	lnc-FBXO25-1:1	ENSG00000248171	ENST00000507973	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
LNCA_21_P0010299	1.354385	A	2.2984693	A	0.51975934596247	0	lncRNA	TCONS_00029174	NA	NA	NA	NA	XLOC_014113	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014113), lincRNA [TCONS_00029174]"	chr21:45610563-45610504	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029174	TCONS_00029174	chr21	 45610504	 45610563	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003513	0.91166	A	1.4045978	A	0.710576656557898	0	lncRNA	ENST00000512039	NA	NA	NA	NA	XLOC_004090	NA	ENST00000512039	THC2728422	NA	"BROAD Institute lincRNA (XLOC_004090), lincRNA [TCONS_00007846]"	chr4:137734865-137734806	hs|4q28.3	Agilent_HUMAN_G3V2	ENST00000512039	ENST00000512039	chr4	137734806	137734865	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00322757	4.976681	P	4.9877925	P	0.9923276787738	0	lncRNA	ENST00000442625	XR_110307	XR_110307	NA	Hs.729031	MCF2L	MCF.2 cell line derived transforming sequence-like	ENST00000442625	THC2606715	GO:0005085|GO:0051056|GO:0008624|GO:0048011|GO:0005737|GO:0005886|GO:0035023|GO:0007264|GO:0006915|GO:0005089|GO:0005829	"PREDICTED: Homo sapiens hypothetical LOC100506063 (LOC100506063), miscRNA [XR_110307]"	chr13:113612414-113612473	hs|13q34	Agilent_HUMAN_G3V2	ENST00000442625	ENST00000442625	chr13	113612414	113612473	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002333	2.916274	A	3.7600603	P	0.5571793517967	0	lncRNA	TCONS_00003973	NA	NA	NA	NA	XLOC_001787	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001787), lincRNA [TCONS_00003973]"	chr2:192500385-192502078	hs|2q32.3	Agilent_HUMAN_G3V2	TCONS_00003973	TCONS_00003973	chr2	192500385	192502078	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009059	0.89373624	A	1.7067918	A	0.569175094466816	0	lncRNA	TCONS_00024727	NA	NA	NA	NA	XLOC_012007	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012007), lincRNA [TCONS_00024727]"	chr16:74249855-74249796	hs|16q23.1	Agilent_HUMAN_G3V2	TCONS_00024727	TCONS_00024727	chr16	 74249796	 74249855	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16392_PI429285431	7.7177157	P	7.119956	P	1.51336470100603	0	lncRNA	18087-3_{6001..6563}	lnc-PREX1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PREX1-3:1	chr20	 47107365	 47107927	-	lnc-PREX1-3	lnc-PREX1-3:1	XLOC_013778	linc-SULF2-9	NA	NA	NA	inter
LNCA_21_P0012881	0.88811886	A	0.8907836	A	0.99815464774213	0	lncRNA	TCONS_l2_00022742	NA	NA	NA	NA	XLOC_l2_011908	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011908), lincRNA [TCONS_l2_00022742]"	chr5:1171509-1171450	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_l2_00022742	TCONS_l2_00022742	chr5	  1171450	  1171509	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22499_PI429285431	1.4829494	A	2.0884593	A	0.657239047273718	0	lncRNA	24086-1_{1..299}	lnc-GRM7-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-GRM7-6:1	chr3	  6407416	  6407714	+	lnc-GRM7-6	lnc-GRM7-6:1	ENSG00000226022.1	AC026167.1	NA	NA	NA	inter
CUST_2842_PI429285431	2.534669	A	3.1127894	P	0.669835897779621	0	lncRNA	2825-1_{1..407}	"transcript_id ""ENST00000442649.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000442649.1"" | genecode_v17"	chr7	 57277572	 57277978	-	ENSG00000234089.1	ENST00000442649.1	RP11-1217F2.15	RP11-1217F2.15-002	NA	NA	NA	inter
CUST_13325_PI429285431	0.8891176	A	1.1112618	A	0.857290344618547	0	lncRNA	14960-1_{1..399}	lnc-B3GALTL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-B3GALTL-2:1	chr13	 32057330	 32057728	+	lnc-B3GALTL-2	lnc-B3GALTL-2:1	XLOC_010340	linc-RXFP2-1	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20"	NA	inter
CUST_52218_PI429285431	3.8381171	P	3.946268	P	0.927776429776499	0	lncRNA	55732-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_00030013 range=chr6_ssto_hap7:4275023-4278589 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_00030013 range=chr6_ssto_hap7:4275023-4278589 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6_ssto_hap7	  4275023	  4278022	+	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_PPP1R2:range=chr3:195243694-1952698485'pad=0,hg19_refFlat_PPP1R2:range=chr3:195243694-1952698485'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50"	NA	Unknown
LNCA_21_P0007781	3.9486432	P	4.151709	P	0.868702563518468	0	lncRNA	TCONS_00020971	NA	NA	NA	NA	XLOC_010241	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010241), lincRNA [TCONS_00020971]"	chr12:126921599-126921540	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020971	TCONS_00020971	chr12	126921540	126921599	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010453	2.061691	A	2.232173	A	0.888545771146862	0	lncRNA	AL137569	NA	AL137569	NA	Hs.528519	LOC100271722	uncharacterized LOC100271722	NA	THC2493154	NA	"BROAD Institute lincRNA (XLOC_014404), lincRNA [TCONS_00029731]"	chr22:46438500-46438441	hs|22q13.31	Agilent_HUMAN_G3V2	AL137569	AL137569	chr22	 46438441	 46438500	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33484_PI429285431	3.5527248	P	1.9785296	A	2.9776933719286	0	lncRNA	35056-1_{1..1252}	n340223|BC039411|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2684|NULL|-1.2843800|-0.3883824	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340223|BC039411|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2684|NULL|-1.2843800|-0.3883824	chr4	134114523	134115774	+	NA	NA	NA	NA	PCDH10	NA	chr4:134104523-134112732	inter
CUST_27031_PI429285431	0.88601005	A	0.9034271	A	0.9880000021075	0	lncRNA	28562-1_{1..2913}	n324137|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051963|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051963|-0.0547186|-0.2848117	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324137|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051963|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051963|-0.0547186|-0.2848117	chr9	 27235681	 27238593	-	NA	NA	NA	NA	TEK	NA	chr9:27225681-27230172	inter
CUST_26528_PI429285431	0.95290154	A	1.0041598	A	0.965094245772122	0	lncRNA	28035-1_{1..292}	lnc-DUOX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DUOX1-1:1	chr15	 45492056	 45492347	+	lnc-DUOX1-1	lnc-DUOX1-1:1	ENSG00000259519.1	RP11-519G16.2	SHF	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-28.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-36.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70chr15:45482056-45493373"	NA	inner
LNCA_21_P0014095	2.54723	A	3.575827	P	0.490186616450981	0	lncRNA	XR_108420	XR_108420	XR_108420	NA	NA	LOC100507247	uncharacterized LOC100507247	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507247 (LOC100507247), miscRNA [XR_108420]"	chr2:203252209-203252150	hs|2q33.1	Agilent_HUMAN_G3V2	XR_108420	XR_108420	chr2	203252150	203252209	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001276	2.5847397	A	2.5021722	A	1.05890084328353	0	lncRNA	TCONS_00000874	NA	NA	NA	NA	XLOC_000111	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000111), lincRNA [TCONS_00000874]"	chr1:29462416-29462475	hs|1p35.3	Agilent_HUMAN_G3V2	TCONS_00000874	TCONS_00000874	chr1	 29462416	 29462475	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_289_PI429285431	0.9274465	A	1.9157612	A	0.504066261757702	0	lncRNA	280-1_{1..369}	"transcript_id ""ENST00000436121.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436121.1"" | genecode_v17"	chr1	 76477009	 76477377	+	ENSG00000225605.1	ENST00000436121.1	RP11-550H2.1	RP11-550H2.1-001	NA	NA	NA	inter
LNCA_21_P0001357	0.9166428	A	0.9345809	A	0.987643236169815	0	lncRNA	TCONS_00001083	NA	NA	NA	NA	XLOC_000326	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000326), lincRNA [TCONS_00001083]"	chr1:104668515-104672476	hs|1p21.1	Agilent_HUMAN_G3V2	TCONS_00001083	TCONS_00001083	chr1	104668515	104672476	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007338	3.8628452	P	3.4081473	P	1.370495793436	0	lncRNA	ENST00000532428	NA	AK226157	NA	Hs.447794	APIP	APAF1 interacting protein	ENST00000532428	NA	GO:0005515|GO:0043167|GO:0006915|GO:0008652|GO:0009086|GO:0046872|GO:0016829|GO:0005829|GO:0042802|GO:0034641|GO:0005737|GO:0019509|GO:0006595|GO:0046570	"BROAD Institute lincRNA (XLOC_009414), lincRNA [TCONS_00019614]"	chr11:34876918-34876859	hs|11p13	Agilent_HUMAN_G3V2	ENST00000532428	ENST00000532428	chr11	 34876859	 34876918	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31213_PI429285431	15.101396	P	15.42498	P	0.799082297995408	0	lncRNA	33005-1_{1..1731}	n337660|AK093159|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|40|NULL|-0.7491010|-0.2158585	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337660|AK093159|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|40|NULL|-0.7491010|-0.2158585	chr1	  7152786	  7154516	+	NA	NA	NA	NA	CAMTA1	NA	chr1:7142786-7164516	inner
CUST_41899_PI429285431	4.552663	P	4.6661396	P	0.924357862401238	0	lncRNA	43616-1_{1..76}	ENST00000583423 ncrna:miRNA chromosome:GRCh37:8:104166842:104166917:1 gene:ENSG00000265657 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583423 ncrna:miRNA chromosome:GRCh37:8:104166842:104166917:1 gene:ENSG00000265657 gene_biotype:miRNA transcript_biotype:miRNA	chr8	104166842	104166917	+	ENSG00000265657	ENST00000583423	NA	NA	BAALC	NA	chr8:104156842-104176917	inner
CUST_21343_PI429285431	0.92137426	A	0.9267472	A	0.996282688161656	0	lncRNA	22966-1_{1..573}	lnc-RNASE10-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RNASE10-2:3	chr14	 21064835	 21065407	+	lnc-RNASE10-2	lnc-RNASE10-2:3	ENSG00000258573.1	RP11-14J7.6	RNASE11	"hg19_refFlat_RNASE12:range=chr14:21058439-210588825'pad=0,hg19_refFlat_RNASE12:range=chr14:21058439-210588825'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00chr14:21054835-21058417"	NA	inter
CUST_25607_PI429285431	6.520645	P	5.895097	P	1.54279673721746	0	lncRNA	27136-1_{1..464}	lnc-IRX3-4:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IRX3-4:18	chr16	 54957497	 54957960	-	lnc-IRX3-4	lnc-IRX3-4:18	ENSG00000245694.4	CRNDE	IRX5	NA	chr16:54965111-54967691	inter
CUST_2995_PI429285431	1.0102795	A	0.9127883	A	1.06991130274755	0	lncRNA	2975-1_{1..743}	"transcript_id ""ENST00000522836.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522836.1"" | genecode_v17"	chr8	  9106927	  9107669	+	ENSG00000254235.1	ENST00000522836.1	RP11-115J16.1	RP11-115J16.1-005	NA	NA	NA	inter
LNCA_21_P0012922	0.8883994	A	0.89124155	A	0.998031910972786	0	lncRNA	ENST00000512693	NA	AL833206	NA	Hs.532104	XLOC_l2_012173	NA	ENST00000512693	THC2620631	NA	"BROAD Institute lincRNA (XLOC_l2_012173), lincRNA [TCONS_l2_00023048]"	chr5:108656252-108656193	hs|5q21.3	Agilent_HUMAN_G3V2	ENST00000512693	ENST00000512693	chr5	108656193	108656252	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008853	0.8846547	A	0.8774461	A	1.00500912469244	0	lncRNA	TCONS_00024154	NA	NA	NA	NA	XLOC_011523	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011523), lincRNA [TCONS_00024154]"	chr15:72757214-72757155	hs|15q24.1	Agilent_HUMAN_G3V2	TCONS_00024154	TCONS_00024154	chr15	 72757155	 72757214	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007532	0.88483655	A	0.8765644	A	1.00575028724416	0	lncRNA	TCONS_00020353	NA	NA	NA	NA	XLOC_009683	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009683), lincRNA [TCONS_00020353]"	chr12:19806769-19806828	hs|12p12.3	Agilent_HUMAN_G3V2	TCONS_00020353	TCONS_00020353	chr12	 19806769	 19806828	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10889_PI429285431	4.498979	P	4.5487638	P	0.966080423828009	0	lncRNA	12430-1_{1..1966}	lnc-RNASE6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RNASE6-2:1	chr14	 21267746	 21269711	+	lnc-RNASE6-2	lnc-RNASE6-2:1	XLOC_010752	linc-RNASE3	RNASE1	NA	chr14:21269515-21271036	inter
CUST_8190_PI429285431	1.5413265	A	0.87866044	A	1.58300527178328	0	lncRNA	9789-1_{1..2343}	lnc-ACBD6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACBD6-2:1	chr1	180166485	180168827	-	lnc-ACBD6-2	lnc-ACBD6-2:1	ENSG00000247866	ENST00000500066	QSOX1	"hg19_refFlat_QSOX1:range=chr1:180124043-1801664765'pad=0,hg19_refFlat_QSOX1:range=chr1:180124043-1801664765'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.20;hg19_refFlat_QSOX1:range=chr1:180124043-1801661725'pad=0,hg19_refFlat_QSOX1:range=chr1:180124043-1801661725'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.20chr1:180156485-180167169"	NA	inner
CUST_20489_PI429285431	6.39293	P	5.4377675	P	1.93879800083166	0	lncRNA	22132-1_{1..3000}	lnc-BLID-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-BLID-1:4	chr11	121972155	121975154	-	lnc-BLID-1	lnc-BLID-1:4	ENSG00000255248.2	RP11-166D19.1	NA	NA	NA	inter
CUST_13675_PI429285431	1.4047413	A	1.2404196	A	1.12063907254137	0	lncRNA	15312-1_{1..553}	lnc-SUCLG2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SUCLG2-1:1	chr3	 67292056	 67292608	-	lnc-SUCLG2-1	lnc-SUCLG2-1:1	XLOC_003153	linc-LRIG1-1	NA	NA	NA	inter
CUST_22558_PI429285431	1.0172373	A	0.91226333	A	1.07547498589464	0	lncRNA	24145-1_{1..737}	lnc-ZNF236-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF236-1:5	chr18	 74695683	 74696419	+	lnc-ZNF236-1	lnc-ZNF236-1:5	ENSG00000266844.1	RP11-862L9.3	MBP	NA	chr18:74690789-74706118	inner
LNCA_21_P0014444	0.8876432	A	1.992846	A	0.464837124443812	0	lncRNA	XR_109837	XR_109837	XR_109837	NA	NA	LOC100507639	uncharacterized LOC100507639	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507639 (LOC100507639), miscRNA [XR_109837]"	chr4:142242337-142242278	hs|4q31.21	Agilent_HUMAN_G3V2	XR_109837	XR_109837	chr4	142242278	142242337	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28177_PI429285431	1.3891183	A	1.0940776	A	1.22691958950484	0	lncRNA	29803-1_{1..423}	n325456|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323695|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323695|-0.9707740|-0.2618094	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325456|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000323695|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000323695|-0.9707740|-0.2618094	chr2	  6706687	  6707109	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20396_PI429285431	0.8972161	A	0.88785124	A	1.00651233997462	0	lncRNA	22037-1_{1..576}	lnc-CNBD1-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CNBD1-4:5	chr8	 89721559	 89722134	+	lnc-CNBD1-4	lnc-CNBD1-4:5	ENSG00000253553.1	RP11-586K2.1	NA	NA	NA	inter
CUST_25714_PI429285431	1.2129258	A	1.2298834	A	0.988314697089855	0	lncRNA	27242-1_{1..484}	lnc-TRIM16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM16-1:1	chr17	 15646917	 15647400	-	lnc-TRIM16-1	lnc-TRIM16-1:1	ENSG00000233002.2	AC005324.6	TBC1D26	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TBC1D28:range=chr17:18539775-185446655'pad=0,hg19_refFlat_TBC1D28:range=chr17:18539775-185446655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_TBC1D26:range=chr17:15638663-156453425'pad=0,hg19_refFlat_TBC1D26:range=chr17:15638663-156453425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90chr17:15636917-15648098"	NA	inner
CUST_38248_PI429285431	0.9034555	A	1.0473374	A	0.905080550361578	0	lncRNA	39306-2_{3001..3528}	n381761|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001phy.2||1.5493400|-0.3296842	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381761|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001phy.2||1.5493400|-0.3296842	chr11	104775277	104775804	-	NA	NA	NA	NA	CASP12	NA	chr11:104762277-104769397	inter
CUST_37751_PI429285431	2.7798505	A	2.7246354	A	1.03901400453874	0	lncRNA	38847-1_{1..443}	n346258|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1808|NULL|-1.6592400|-0.1468954	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346258|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1808|NULL|-1.6592400|-0.1468954	chr3	195665537	195665979	-	NA	NA	NA	NA	NA	"hg19_refFlat_PPP4R2:range=chr3:73046189-731148735'pad=0,hg19_refFlat_PPP4R2:range=chr3:73046189-731148735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10"	NA	inter
CUST_33093_PI429285431	0.90876365	A	1.9721837	A	0.478496391492327	0	lncRNA	34697-1_{1..1929}	n339783|AK124089|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2230|NULL|-1.2037800|-0.4079735	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339783|AK124089|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2230|NULL|-1.2037800|-0.4079735	chr18	  6727051	  6728979	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27503_PI429285431	7.510252	P	7.5924	P	0.944650128353546	0	lncRNA	29074-3_{6001..6477}	n324681|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000075332|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000075332|2.7187300|-0.1573271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324681|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000075332|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000075332|2.7187300|-0.1573271	chr22	 29701642	 29702118	+	NA	NA	NA	NA	GAS2L1	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-56.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-55.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30chr22:29702997-29708774"	NA	inner
CUST_10178_PI429285431	4.8850255	P	4.850461	P	1.02424759125119	0	lncRNA	11703-1_{1..1541}	lnc-MAN2C1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAN2C1-2:3	chr15	 75518100	 75519640	-	lnc-MAN2C1-2	lnc-MAN2C1-2:3	XLOC_011533	linc-RPP25-2	NA	NA	NA	inter
CUST_33662_PI429285431	6.249714	P	6.528771	P	0.824129523455833	0	lncRNA	35224-1_{1..1881}	n340425|AK055939|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2886|NULL|2.6523700|-0.1259839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340425|AK055939|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2886|NULL|2.6523700|-0.1259839	chr5	 32173501	 32175381	+	NA	NA	NA	NA	GOLPH3	"hg19_refFlat_GOLPH3:range=chr5:32126318-321741405'pad=0,hg19_refFlat_GOLPH3:range=chr5:32126318-321741405'pad=0 3'pad=0 strand=- repeatMasking=none,-107.70chr5:32163501-32174425"	NA	inner
LNCA_19_P00319971	8.550825	P	8.953883	P	0.756253594718104	0	lncRNA	ENST00000444663	XR_110118	XR_110118	NA	NA	NA	0	ENST00000444663	THC2674270	NA	"PREDICTED: Homo sapiens hypothetical LOC100507253 (LOC100507253), miscRNA [XR_110118]"	chr13:44722107-44722166	hs|13q14.11	Agilent_HUMAN_G3V2	ENST00000444663	ENST00000444663	chr13	 44722107	 44722166	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9257_PI429285431	0.91132987	A	0.9107103	A	1.00042954542689	0	lncRNA	10766-1_{1..3000}	lnc-WRNIP1-2:23	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRNIP1-2:23	chr6	  2413014	  2416013	+	lnc-WRNIP1-2	lnc-WRNIP1-2:23	ENSG00000250903	XLOC_005127	NA	NA	NA	inter
LNCA_21_P0005587	0.9241923	A	0.97641397	A	0.964449985520959	0	lncRNA	TCONS_00014238	NA	NA	NA	NA	XLOC_006308	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006308), lincRNA [TCONS_00014238]"	chr7:156028525-156028584	hs|7q36.3	Agilent_HUMAN_G3V2	TCONS_00014238	TCONS_00014238	chr7	156028525	156028584	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42774_PI429285431	8.472258	P	7.839841	P	1.55015985905634	0	lncRNA	45757-1_{1..77}	ENST00000363064 ncrna:snoRNA chromosome:GRCh37:1:86057963:86058039:1 gene:ENSG00000199934 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363064 ncrna:snoRNA chromosome:GRCh37:1:86057963:86058039:1 gene:ENSG00000199934 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 86057963	 86058039	+	ENSG00000199934	ENST00000363064	NA	NA	CYR61	NA	chr1:86047963-86049650	inter
LNCA_21_P0006728	3.3938332	P	4.1173315	P	0.605627113363734	0	lncRNA	TCONS_00017910	NA	NA	NA	NA	XLOC_008703	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008703), lincRNA [TCONS_00017910]"	chr10:4698946-4693388	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_00017910	TCONS_00017910	chr10	  4693388	  4698946	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003359	2.514976	A	3.855052	P	0.394999847113291	0	lncRNA	ENST00000508352	NA	NA	NA	NA	XLOC_003526	NA	ENST00000508352	THC2669712	NA	"BROAD Institute lincRNA (XLOC_003526), lincRNA [TCONS_00007523]"	chr4:43347555-43347614	hs|4p13	Agilent_HUMAN_G3V2	ENST00000508352	ENST00000508352	chr4	 43347555	 43347614	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48148_PI429285431	0.9247628	A	1.4614642	A	0.689345238091376	0	lncRNA	52015-1_{1..735}	"gi|341913906|ref|XR_133041.1| PREDICTED: Homo sapiens uncharacterized LOC100506412, transcript variant 1 (LOC100506412), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341913906|ref|XR_133041.1| PREDICTED: Homo sapiens uncharacterized LOC100506412, transcript variant 1 (LOC100506412), misc_RNA"	NA	NA	NA	NA	NA	XR_133041.1	NA	NA	NA	NA	NA	Unknown
CUST_30609_PI429285431	2.411356	A	3.3227072	A	0.531686890402613	0	lncRNA	32391-1_{1..459}	n335931|X68879|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322949|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322949|2.0795400|-0.0397794	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335931|X68879|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322949|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322949|2.0795400|-0.0397794	chr2	 73145393	 73145851	+	NA	NA	NA	NA	SFXN5	NA	chr2:73169165-73171083	inner
CUST_49160_PI429285431	0.9022256	A	0.90181655	A	1.00028357205316	0	lncRNA	52986-1_{1..866}	hg19_lincRNAsTranscripts_TCONS_l2_00020765 range=chr4:132444072-132513139 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020765 range=chr4:132444072-132513139 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	132444072	132444937	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8134_PI429285431	1.8824236	A	1.784667	A	1.07010814308567	0	lncRNA	9737-1_{1..849}	lnc-WDR74-1:25	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR74-1:25	chr11	 62621024	 62621872	-	lnc-WDR74-1	lnc-WDR74-1:25	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62631168	inter
LNCA_21_P0006078	0.8951897	A	0.90295625	A	0.994631102092089	0	lncRNA	CR627148	NA	CR627148	NA	Hs.351215	XLOC_007710	NA	NA	THC2493184	NA	"BROAD Institute lincRNA (XLOC_007710), lincRNA [TCONS_00015825]"	chr9:66469217-66469276	hs|9q13	Agilent_HUMAN_G3V2	CR627148	CR627148	chr9	 66469217	 66469276	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48790_PI429285431	4.2233596	P	4.5455685	P	0.799844303735106	0	lncRNA	52628-1_{1..925}	hg19_lincRNAsTranscripts_TCONS_l2_00014250 range=chr2:220361522-220363049 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014250 range=chr2:220361522-220363049 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	220361522	220362446	+	NA	NA	NA	NA	SPEG	NA	chr2:220351522-220358354	inter
CUST_16881_PI429285431	0.8931628	A	0.9196117	A	0.981834046365105	0	lncRNA	18590-1_{1..1212}	lnc-FAM113B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM113B-1:3	chr12	 47651245	 47652456	+	lnc-FAM113B-1	lnc-FAM113B-1:3	XLOC_009727	linc-SLC48A1-4	NA	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-23.50;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.80"	NA	inter
LNCA_21_P0003723	0.88473624	A	1.8353527	A	0.51741132610689	0	lncRNA	THC2715353	NA	NA	NA	NA	XLOC_003884	NA	NA	THC2715353	NA	"BROAD Institute lincRNA (XLOC_003884), lincRNA [TCONS_00008438]"	chr4:012550453-012550394	hs|4p15.33	Agilent_HUMAN_G3V2	THC2715353	THC2715353	chr4	 12550394	 12550453	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012286	3.0482423	P	2.8198829	A	1.17150198604405	0	lncRNA	TCONS_l2_00017900	NA	NA	NA	NA	XLOC_l2_009469	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009469), lincRNA [TCONS_l2_00017900]"	chr22:20975868-20975623	hs|22q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00017900	TCONS_l2_00017900	chr22	 20975623	 20975868	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26812_PI429285431	0.8908446	A	0.925765	A	0.976085614341467	0	lncRNA	28325-1_{1..639}	n323881|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056341|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056341|-0.8181410|-0.2500448	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323881|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056341|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056341|-0.8181410|-0.2500448	chrX	 45254672	 45255310	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49165_PI429285431	0.88796633	A	0.91415626	A	0.982010305642381	0	lncRNA	52991-1_{1..1860}	hg19_lincRNAsTranscripts_TCONS_l2_00021304 range=chr4:138947366-139052302 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021304 range=chr4:138947366-139052302 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	138947366	138949225	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24575_PI429285431	1.2668207	A	2.3178544	A	0.482622238702383	0	lncRNA	26123-1_{1..543}	lnc-C5orf22-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C5orf22-1:1	chr5	 31664944	 31665486	+	lnc-C5orf22-1	lnc-C5orf22-1:1	ENSG00000248624.1	RP11-5N11.2	NA	NA	NA	inter
LNCA_21_P0012836	1.5203527	A	2.2924106	A	0.585581588862046	0	lncRNA	TCONS_l2_00022397	NA	NA	NA	NA	XLOC_l2_011656	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011656), lincRNA [TCONS_l2_00022397]"	chr5:85384823-85384882	hs|5q14.3	Agilent_HUMAN_G3V2	TCONS_l2_00022397	TCONS_l2_00022397	chr5	 85384823	 85384882	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010691	1.665513	A	0.87725013	A	1.72699375986989	0	lncRNA	ENST00000441724	XR_109862	XR_109862	NA	Hs.185688	XLOC_l2_000048	NA	ENST00000441724	THC2481854	NA	"PREDICTED: Homo sapiens non-protein coding RNA 337 (NCRNA00337), miscRNA [XR_109862]"	chr1:6298719-6298778	hs|1p36.31	Agilent_HUMAN_G3V2	ENST00000441724	ENST00000441724	chr1	  6298719	  6298778	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008101	0.8884308	A	2.1981254	A	0.403406266495511	0	lncRNA	TCONS_00021869	NA	NA	NA	NA	XLOC_010468	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010468), lincRNA [TCONS_00021869]"	chr13:90204419-90204478	hs|13q31.3	Agilent_HUMAN_G3V2	TCONS_00021869	TCONS_00021869	chr13	 90204419	 90204478	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48091_PI429285431	2.947424	A	3.2752528	A	0.796734636623708	0	lncRNA	51967-1_{1..906}	"gi|410170148|ref|XR_172473.1| PREDICTED: Homo sapiens HLA class II histocompatibility antigen, DRB1-10 beta chain-like (LOC101060779), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170148|ref|XR_172473.1| PREDICTED: Homo sapiens HLA class II histocompatibility antigen, DRB1-10 beta chain-like (LOC101060779), misc_RNA"	NA	NA	NA	NA	NA	XR_172473.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013632	0.8882454	A	0.8793595	A	1.0061782436321	0	lncRNA	TCONS_l2_00029283	NA	NA	NA	NA	XLOC_l2_015172	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015172), lincRNA [TCONS_l2_00029283]"	chr9:42495133-42497630	hs|9p12	Agilent_HUMAN_G3V2	TCONS_l2_00029283	TCONS_l2_00029283	chr9	 42495133	 42497630	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013347	3.0667295	P	3.2562532	P	0.87689517696903	0	lncRNA	ENST00000456062	NA	NA	NA	NA	XLOC_l2_013978	NA	ENST00000456062	THC2723958	NA	"BROAD Institute lincRNA (XLOC_l2_013978), lincRNA [TCONS_l2_00026861]"	chr7:119781152-119781093	hs|7q31.31	Agilent_HUMAN_G3V2	ENST00000456062	ENST00000456062	chr7	119781093	119781152	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003179	2.871518	A	3.1293766	P	0.836328365286129	0	lncRNA	TCONS_00006667	NA	NA	NA	NA	XLOC_003263	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003263), lincRNA [TCONS_00006667]"	chr3:135098131-134979870	hs|3q22.2	Agilent_HUMAN_G3V2	TCONS_00006667	TCONS_00006667	chr3	134979870	135098131	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38912_PI429285431	10.891424	P	10.791101	P	1.07201344505118	0	lncRNA	39901-1_{1..879}	n384987|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pqc.2||2.1530600|-0.2536147	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384987|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pqc.2||2.1530600|-0.2536147	chr6	 99973939	 99974817	+	NA	NA	NA	NA	CCNC	"hg19_refFlat_TIGD1:range=chr2:233412817-2334145925'pad=0,hg19_refFlat_TIGD1:range=chr2:233412817-2334145925'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10chr6:99990263-100016690"	NA	inner
CUST_1019_PI429285431	12.46559	P	12.2479	P	1.16287014225044	0	lncRNA	1008-1_{1..2051}	"transcript_id ""ENST00000414416.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000414416.2"" | genecode_v17"	chr2	110969106	110971156	-	ENSG00000175701.6	ENST00000414416.2	LINC00116	LINC00116-001	NPHP1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90chr2:110959106-110962639"	NA	inter
LNCA_21_P0014826	3.3126104	P	3.441196	P	0.914727798355908	0	lncRNA	XR_132673	XR_132673	XR_132673	NA	NA	LOC100507579	uncharacterized LOC100507579	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507579 (LOC100507579), miscRNA [XR_132673]"	chr20:2677779-2677838	hs|20p13	Agilent_HUMAN_G3V2	XR_132673	XR_132673	chr20	  2677779	  2677838	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3300843	11.295784	P	10.968327	P	1.2547996222679	0	lncRNA	XR_132811	XR_132811	XR_132811	   401357	Hs.520384	LOC401357	uncharacterized LOC401357	NA	THC2481823	NA	"PREDICTED: Homo sapiens hypothetical LOC401357 (LOC401357), miscRNA [XR_132811]"	chr7:56879641-56879583	hs|7p11.2	Agilent_HUMAN_G3V2	XR_132811	XR_132811	chr7	 56879583	 56879641	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014309	2.6131322	A	3.244746	P	0.645454005905341	0	lncRNA	ENST00000553080	XR_109238	XR_109238	NA	Hs.729809	WDR90	WD repeat domain 90	ENST00000553080	THC2478971	NA	"PREDICTED: Homo sapiens hypothetical LOC100507167 (LOC100507167), miscRNA [XR_109238]"	chr16:715016-715075	hs|16p13.3	Agilent_HUMAN_G3V2	ENST00000553080	ENST00000553080	chr16	   715016	   715075	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011742	6.540314	P	4.2551937	P	4.87404746315674	0	lncRNA	AK090827	NA	AK090827	NA	NA	LOC100506930	uncharacterized LOC100506930	NA	THC2478452	NA	"BROAD Institute lincRNA (XLOC_l2_007033), lincRNA [TCONS_l2_00013077]"	chr19:36806583-36806524	hs|19q13.12	Agilent_HUMAN_G3V2	AK090827	AK090827	chr19	 36806524	 36806583	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33296_PI429285431	0.9185828	A	1.4944123	A	0.670900395834506	0	lncRNA	34879-1_{1..1996}	n340008|AK130534|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2461|NULL|0.2637480|-0.2741694	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340008|AK130534|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2461|NULL|0.2637480|-0.2741694	chr10	 29933706	 29935701	-	NA	NA	NA	NA	SVIL	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30chr10:29923706-29945702"	NA	inner
CUST_41642_PI429285431	3.7152658	P	4.1099663	P	0.760647268763592	0	lncRNA	43041-1_{1..100}	ENST00000579212 ncrna:miRNA chromosome:GRCh37:17:62497332:62497431:-1 gene:ENSG00000266241 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579212 ncrna:miRNA chromosome:GRCh37:17:62497332:62497431:-1 gene:ENSG00000266241 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 62497332	 62497431	-	ENSG00000266241	ENST00000579212	NA	NA	CEP95	NA	chr17:62503158-62507431	inter
CUST_51410_PI429285431	3.1607883	P	3.6980112	P	0.689096101187792	0	lncRNA	54989-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00009917 range=chr16:75602-87928 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009917 range=chr16:75602-87928 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	    75602	    78601	-	NA	NA	NA	NA	POLR3K	"hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-62.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70chr16:96979-97928"	NA	inter
CUST_41716_PI429285431	0.9250249	A	1.2145256	A	0.818185173950808	0	lncRNA	43223-1_{1..92}	ENST00000362104 ncrna:miRNA chromosome:GRCh37:1:41220027:41220118:1 gene:ENSG00000198974 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362104 ncrna:miRNA chromosome:GRCh37:1:41220027:41220118:1 gene:ENSG00000198974 gene_biotype:miRNA transcript_biotype:miRNA	chr1	 41220027	 41220118	+	ENSG00000198974	ENST00000362104	NA	NA	NFYC	NA	chr1:41210027-41230118	inner
CUST_20295_PI429285431	1.347462	A	1.3584651	A	0.992402242252997	0	lncRNA	21939-1_{1..395}	lnc-ST3GAL6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ST3GAL6-1:2	chr3	 98737275	 98737669	+	lnc-ST3GAL6-1	lnc-ST3GAL6-1:2	ENSG00000239462.1	CTD-2021J15.1	NA	NA	NA	inter
CUST_54_PI429285431	3.6763673	P	3.9198165	P	0.844723328958796	0	lncRNA	53-1_{1..1851}	"transcript_id ""ENST00000554025.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000554025.1"" | genecode_v17"	chr14	 99391474	 99393324	-	ENSG00000259119.1	ENST00000554025.1	RP11-1127D7.1	RP11-1127D7.1-001	NA	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60"	NA	inter
CUST_44460_PI429285431	6.5455866	P	5.5632544	P	1.97565659210747	0	lncRNA	49064-1_{1..2033}	"gi|295849294|ref|NR_033655.1| Homo sapiens aspartylglucosaminidase (AGA), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|295849294|ref|NR_033655.1| Homo sapiens aspartylglucosaminidase (AGA), transcript variant 3, non-coding RNA"	Chr4	178351928	178353960	-	175	NR_033655.1	NA	NA	NA	NA	NA	inter
CUST_25882_PI429285431	3.4195411	P	4.2374268	P	0.567272683843314	0	lncRNA	27402-1_{1..540}	lnc-AGGF1-3:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGGF1-3:13	chr5	 76435086	 76435625	+	lnc-AGGF1-3	lnc-AGGF1-3:13	ENSG00000250802.2	CTC-564N23.3	NA	NA	NA	inter
CUST_40683_PI429285431	4.9998856	P	4.5946817	P	1.32427606069446	0	lncRNA	41418-1_{1..547}	n410241|NR_037172_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037172_2||-1.0783900|-0.2957690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410241|NR_037172_2|lncRNA|Homosapiens||RefGeneNoncode|NR_037172_2||-1.0783900|-0.2957690	chr6	  3381592	  3382138	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3371592-3393155	inner
LNCA_21_P0011895	4.1421194	P	4.8448205	P	0.614420773772635	0	lncRNA	ENST00000426962	NA	NA	NA	NA	XLOC_l2_007834	NA	ENST00000426962	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007834), lincRNA [TCONS_l2_00014346]"	chr2:242913468-242913527	hs|2q37.3	Agilent_HUMAN_G3V2	ENST00000426962	ENST00000426962	chr2	242913468	242913527	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3304247	5.3526726	P	5.950692	P	0.660660318833557	0	lncRNA	XR_108367	XR_108367	XR_108367	NA	Hs.667728	NA	NA	NA	THC2483188	NA	"PREDICTED: Homo sapiens hypothetical LOC644075 (LOC644075), miscRNA [XR_108367]"	chr1:19679296-19679237	hs|1p36.13	Agilent_HUMAN_G3V2	XR_108367	XR_108367	chr1	 19679237	 19679296	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21845_PI429285431	3.6320217	P	3.2212026	A	1.32944039876644	0	lncRNA	23455-1_{1..1746}	lnc-GPRC5A-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-GPRC5A-2:8	chr12	 13136278	 13138023	+	lnc-GPRC5A-2	lnc-GPRC5A-2:8	ENSG00000247498.2	RP11-392P7.8	HEBP1	NA	chr12:13127798-13147579	inner
LNCA_21_P0004392	3.7234216	P	3.8884265	P	0.891925490060319	0	lncRNA	TCONS_00010341	NA	NA	NA	NA	XLOC_004829	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004829), lincRNA [TCONS_00010341]"	chr5:55752337-55752278	hs|5q11.2	Agilent_HUMAN_G3V2	TCONS_00010341	TCONS_00010341	chr5	 55752278	 55752337	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011850	0.92777455	A	0.9429116	A	0.989562647633819	0	lncRNA	TCONS_l2_00013972	NA	NA	NA	NA	XLOC_l2_007543	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007543), lincRNA [TCONS_l2_00013972]"	chr2:128163607-128163666	hs|2q14.3	Agilent_HUMAN_G3V2	TCONS_l2_00013972	TCONS_l2_00013972	chr2	128163607	128163666	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003984	0.88632	A	0.87584066	A	1.00729016981596	0	lncRNA	TCONS_00009378	NA	NA	NA	NA	XLOC_004335	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004335), lincRNA [TCONS_00009378]"	chr5:34049704-34049763	hs|5p13.2	Agilent_HUMAN_G3V2	TCONS_00009378	TCONS_00009378	chr5	 34049704	 34049763	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37832_PI429285431	4.2546477	P	3.8457668	P	1.32765555080865	0	lncRNA	38924-1_{1..210}	n346354|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1904|NULL|-1.5335200|-0.0828001	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346354|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1904|NULL|-1.5335200|-0.0828001	chr16	 90210260	 90210469	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004645	1.9033206	A	1.3019487	A	1.51715859029094	0	lncRNA	ENST00000451317	NA	NA	NA	NA	XLOC_005263	NA	ENST00000451317	THC2675770	NA	"BROAD Institute lincRNA (XLOC_005263), lincRNA [TCONS_00011295]"	chr6:33892386-33892445	hs|6p21.31	Agilent_HUMAN_G3V2	ENST00000451317	ENST00000451317	chr6	 33892386	 33892445	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35748_PI429285431	0.90840924	A	0.90532565	A	1.00213966754307	0	lncRNA	37167-2_{3001..4093}	n342923|BC044836|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5431|NULL|-0.8956280|-0.2988690	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342923|BC044836|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5431|NULL|-0.8956280|-0.2988690	chr6	143361751	143362843	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_48743_PI429285431	1.5644828	A	1.4420636	A	1.088558695281	0	lncRNA	52581-1_{1..1840}	hg19_lincRNAsTranscripts_TCONS_l2_00013996 range=chr2:132394971-132402697 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013996 range=chr2:132394971-132402697 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	132394971	132396810	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16731_PI429285431	0.89981216	A	0.8839722	A	1.01103991868324	0	lncRNA	18438-1_{1..602}	lnc-ANKRD18B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD18B-3:1	chr9	 33489592	 33490193	+	lnc-ANKRD18B-3	lnc-ANKRD18B-3:1	XLOC_007321	linc-PRSS3-6	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00"	NA	inter
LNCA_21_P0014294	0.88717	A	1.6980188	A	0.57004637627321	0	lncRNA	XR_109190	XR_109190	XR_109190	NA	Hs.685985	LOC100506192	uncharacterized LOC100506192	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506192 (LOC100506192), miscRNA [XR_109190]"	chr15:51629494-51629553	hs|15q21.2	Agilent_HUMAN_G3V2	XR_109190	XR_109190	chr15	 51629494	 51629553	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49253_PI429285431	5.492528	P	5.134742	P	1.28145782694138	0	lncRNA	53072-1_{1..1059}	hg19_lincRNAsTranscripts_TCONS_l2_00022943 range=chr5:70493377-70555122 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022943 range=chr5:70493377-70555122 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 70493377	 70494435	-	NA	NA	NA	NA	LOC100652870	NA	chr5:70519357-70519728	inter
CUST_48736_PI429285431	1.1275747	A	1.3807995	A	0.839018891427878	0	lncRNA	52575-1_{1..552}	hg19_lincRNAsTranscripts_TCONS_l2_00015485 range=chr2:131451332-131460174 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015485 range=chr2:131451332-131460174 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	131451332	131451883	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9536_PI429285431	3.2541125	A	3.0372312	A	1.1622184802337	0	lncRNA	11048-1_{1..943}	lnc-DLK1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DLK1-1:1	chr14	101156539	101157481	+	lnc-DLK1-1	lnc-DLK1-1:1	XLOC_010931	linc-DLK1-1	NA	NA	NA	inter
CUST_33634_PI429285431	11.082336	P	10.497381	P	1.49999220136469	0	lncRNA	35199-1_{1..410}	n340396|U52836|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2857|NULL|-0.8238810|-0.0867485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340396|U52836|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2857|NULL|-0.8238810|-0.0867485	chr5	 10710689	 10711098	-	NA	NA	NA	NA	DAP	NA	chr5:10700689-10721099	inner
CUST_13311_PI429285431	3.7185783	P	4.058552	P	0.790055714266729	0	lncRNA	14946-1_{1..521}	lnc-CNTN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CNTN1-1:1	chr12	 40918318	 40918838	+	lnc-CNTN1-1	lnc-CNTN1-1:1	XLOC_009713	linc-CNTN1	NA	NA	NA	inter
CUST_32307_PI429285431	5.5351586	P	5.437207	P	1.07025279263738	0	lncRNA	33990-1_{1..2164}	n338884|BC042946|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1310|NULL|-1.2848100|-0.3404491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n338884|BC042946|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1310|NULL|-1.2848100|-0.3404491	chr2	 74612844	 74615007	+	NA	NA	NA	NA	DCTN1	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80chr2:74602844-74619214"	NA	inner
CUST_17437_PI429285431	0.907552	A	0.9122499	A	0.996748959972774	0	lncRNA	19161-1_{1..2986}	lnc-NR2F2-8:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-NR2F2-8:3	chr15	 96049283	 96052268	+	lnc-NR2F2-8	lnc-NR2F2-8:3	XLOC_011368	linc-NR2F2-3	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.81;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10"	NA	inter
LNCA_21_P0012162	2.6576076	A	3.4084806	P	0.594243861330113	0	lncRNA	ENST00000412405	NA	NA	NA	NA	XLOC_l2_008760	NA	ENST00000412405	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008760), lincRNA [TCONS_l2_00016850]"	chr20:11246826-11246767	hs|20p12.2	Agilent_HUMAN_G3V2	ENST00000412405	ENST00000412405	chr20	 11246767	 11246826	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26544_PI429285431	3.9096112	P	4.2623734	P	0.783083361562665	0	lncRNA	28049-1_{1..482}	lnc-MRPS22-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPS22-1:3	chr3	139141858	139142339	+	lnc-MRPS22-1	lnc-MRPS22-1:3	ENSG00000248932.1	RP11-319G6.1	NA	NA	NA	inter
LNCA_21_P0014549	4.7331133	P	4.3557305	P	1.29898322498255	0	lncRNA	XR_110276	XR_110276	XR_110276	NA	NA	LOC100506110	uncharacterized LOC100506110	ENST00000553330	THC2656019	NA	"PREDICTED: Homo sapiens hypothetical LOC100506110 (LOC100506110), miscRNA [XR_110276]"	chr14:32419497-32419556	hs|14q12	Agilent_HUMAN_G3V2	XR_110276	XR_110276	chr14	 32419497	 32419556	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52195_PI429285431	1.1716386	A	1.4866438	A	0.803848093375724	0	lncRNA	55711-1_{1..1239}	hg19_lincRNAsTranscripts_TCONS_l2_00017673 range=chr22:25915206-25936755 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017673 range=chr22:25915206-25936755 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 25915206	 25916444	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_6979_PI429285431	1.544044	A	1.3543503	A	1.14052154491304	0	lncRNA	6927-1_{1..550}	"transcript_id ""ENST00000452505.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452505.1"" | genecode_v17"	chr22	 33504515	 33505064	+	ENSG00000231253.1	ENST00000452505.1	RP1-302D9.2	RP1-302D9.2-001	NA	NA	NA	inter
LNCA_21_P0002765	0.90408427	A	0.9156899	A	0.991987859962554	0	lncRNA	ENST00000482766	NA	NA	NA	NA	XLOC_002774	NA	ENST00000482766	NA	NA	"BROAD Institute lincRNA (XLOC_002774), lincRNA [TCONS_00005578]"	chr3:117512494-117512553	hs|3q13.32	Agilent_HUMAN_G3V2	ENST00000482766	ENST00000482766	chr3	117512494	117512553	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33771_PI429285431	0.91480815	A	0.9022385	A	1.00875068277883	0	lncRNA	35324-1_{1..1162}	n340553|AF090944|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3015|NULL|0.3304490|-0.3136857	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340553|AF090944|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3015|NULL|0.3304490|-0.3136857	chr5	 94871014	 94872175	+	NA	NA	NA	NA	TTC37	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80chr5:94861014-94882172"	NA	inner
LNCA_33_P3331426	4.902998	P	6.560432	P	0.317002472939536	0	lncRNA	XR_108343	XR_108343	XR_108343	   642691	Hs.631791	FLJ37786	uncharacterized LOC642691	NA	THC2480914	NA	"PREDICTED: Homo sapiens hypothetical LOC642691 (FLJ37786), miscRNA [XR_108343]"	chr2:91910371-91910312	hs|2p11.1	Agilent_HUMAN_G3V2	XR_108343	XR_108343	chr2	 91910312	 91910371	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47645_PI429285431	0.893093	A	0.88086987	A	1.00850842069247	0	lncRNA	51631-1_{1..2951}	"gi|224028272|ref|NR_026975.1| Homo sapiens family with sequence similarity 195, member A pseudogene (LOC286467), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|224028272|ref|NR_026975.1| Homo sapiens family with sequence similarity 195, member A pseudogene (LOC286467), non-coding RNA"	ChrX	130836678	130839628	-	286467	NR_026975.1	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90"	NA	inter
LNCA_21_P0014342	0.88582975	A	0.8760519	A	1.00680050831373	0	lncRNA	ENST00000414776	XR_109350	XR_109350	NA	NA	LOC100506397	NA	ENST00000414776	THC2610673	NA	"PREDICTED: Homo sapiens hypothetical LOC100506397 (LOC100506397), miscRNA [XR_109350]"	chr17:2136842-2136901	hs|17p13.3	Agilent_HUMAN_G3V2	ENST00000414776	ENST00000414776	chr17	  2136842	  2136901	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1217_PI429285431	4.8389797	P	5.5358577	P	0.61690575068982	0	lncRNA	1208-1_{1..752}	"transcript_id ""ENST00000420509.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420509.1"" | genecode_v17"	chr2	206949329	206950080	+	ENSG00000227946.1	ENST00000420509.1	AC007383.3	AC007383.3-001	INO80D	NA	chr2:206939329-206950906	inner
CUST_49033_PI429285431	7.3594756	P	7.3787074	P	0.98675798924591	0	lncRNA	52862-1_{1..764}	hg19_lincRNAsTranscripts_TCONS_l2_00020591 range=chr4:79892907-80229808 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020591 range=chr4:79892907-80229808 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 79892907	 79893670	+	NA	NA	NA	NA	NAA11	NA	chr4:80238272-80239808	inter
LNCA_21_P0004685	0.8874268	A	0.8761942	A	1.00781623352724	0	lncRNA	TCONS_00011372	NA	NA	NA	NA	XLOC_005465	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005465), lincRNA [TCONS_00011372]"	chr6:132457188-132457247	hs|6q23.2	Agilent_HUMAN_G3V2	TCONS_00011372	TCONS_00011372	chr6	132457188	132457247	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43396_PI429285431	6.6140914	P	7.0264564	P	0.751390614118844	0	lncRNA	48209-1_{1..1103}	"gi|193083186|ref|NR_023918.1| Homo sapiens long intergenic non-protein coding RNA 339 (LINC00339), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|193083186|ref|NR_023918.1| Homo sapiens long intergenic non-protein coding RNA 339 (LINC00339), transcript variant 1, non-coding RNA"	Chr1	 22351707	 22352809	+	29092	NR_023918.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0006801	0.90474117	A	0.8763964	A	1.01984137185123	0	lncRNA	ENST00000454492	NA	NA	NA	NA	XLOC_008989	NA	ENST00000454492	NA	NA	"BROAD Institute lincRNA (XLOC_008989), lincRNA [TCONS_00018067]"	chr10:130114605-130114546	hs|10q26.2	Agilent_HUMAN_G3V2	ENST00000454492	ENST00000454492	chr10	130114546	130114605	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005424	4.062313	P	4.070876	P	0.994082160495677	0	lncRNA	TCONS_00013576	NA	NA	NA	NA	XLOC_006231	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006231), lincRNA [TCONS_00013576]"	chr7:124641055-124641114	hs|7q31.33	Agilent_HUMAN_G3V2	TCONS_00013576	TCONS_00013576	chr7	124641055	124641114	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002306	0.8889915	A	1.8201107	A	0.524451330179584	0	lncRNA	TCONS_00003916	NA	NA	NA	NA	XLOC_001720	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001720), lincRNA [TCONS_00003916]"	chr2:158734036-158734095	hs|2q24.1	Agilent_HUMAN_G3V2	TCONS_00003916	TCONS_00003916	chr2	158734036	158734095	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009183	4.1890616	P	4.035387	P	1.11239919054687	0	lncRNA	ENST00000442532	NA	NA	NA	NA	XLOC_012338	NA	ENST00000442532	NA	NA	"BROAD Institute lincRNA (XLOC_012338), lincRNA [TCONS_00025202]"	chr17:79494658-79494717	hs|17q25.3	Agilent_HUMAN_G3V2	ENST00000442532	ENST00000442532	chr17	 79494658	 79494717	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006695	5.9539022	P	7.2265496	P	0.413899554259122	0	lncRNA	ENST00000439157	NA	NA	NA	NA	XLOC_008556	NA	ENST00000439157	NA	NA	"BROAD Institute lincRNA (XLOC_008556), lincRNA [TCONS_00017855]"	chr10:92290449-92290508	hs|10q23.31	Agilent_HUMAN_G3V2	ENST00000439157	ENST00000439157	chr10	 92290449	 92290508	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25768_PI429285431	1.9788283	A	1.5657948	A	1.33148253047504	0	lncRNA	27293-1_{1..405}	lnc-OR4M2-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR4M2-3:5	chr15	 21198266	 21198670	+	lnc-OR4M2-3	lnc-OR4M2-3:5	ENSG00000258710.3	RP11-810K23.3	NA	NA	NA	inter
LNCA_21_P0003328	1.962866	A	1.8267052	A	1.09897670056922	0	lncRNA	BC031941	NA	BC031941	NA	NA	XLOC_004155	NA	ENST00000514683	THC2631141	NA	"BROAD Institute lincRNA (XLOC_004155), lincRNA [TCONS_00007445]"	chr4:170952991-170952932	hs|4q33	Agilent_HUMAN_G3V2	BC031941	BC031941	chr4	170952932	170952991	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21098_PI429285431	0.9175521	A	0.9155587	A	1.00138267460404	0	lncRNA	22723-1_{1..171}	lnc-C17orf48-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf48-1:1	chr17	 10587252	 10587422	+	lnc-C17orf48-1	lnc-C17orf48-1:1	ENSG00000263388.1	CTC-297N7.10	SCO1	NA	chr17:10583649-10597305	inner
CUST_26395_PI429285431	1.3767697	A	1.7489154	A	0.772632516356771	0	lncRNA	27902-1_{1..751}	lnc-SDCCAG8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SDCCAG8-1:1	chr1	243711320	243712070	+	lnc-SDCCAG8-1	lnc-SDCCAG8-1:1	ENSG00000236031.1	RP11-269F20.1	AKT3	"hg19_refFlat_AKT3:range=chr1:243668551-2440064725'pad=0,hg19_refFlat_AKT3:range=chr1:243668551-2440064725'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_AKT3:range=chr1:243663045-2440064725'pad=0,hg19_refFlat_AKT3:range=chr1:243663045-2440064725'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70chr1:243701320-243721631"	NA	inner
CUST_49170_PI429285431	0.9607166	A	1.0099311	A	0.96646239268583	0	lncRNA	52996-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00021316 range=chr4:141363416-141420653 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021316 range=chr4:141363416-141420653 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	141363416	141366415	-	NA	NA	NA	NA	LOC152586	NA	chr4:141364529-141419501	inter
LNCA_21_P0003719	5.2399235	P	4.656235	P	1.49867597967551	0	lncRNA	TCONS_00008434	NA	NA	NA	NA	XLOC_003881	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003881), lincRNA [TCONS_00008434]"	chr4:009691938-009691882	hs|4p16.1	Agilent_HUMAN_G3V2	TCONS_00008434	TCONS_00008434	chr4	  9691882	  9691938	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12456_PI429285431	3.9413335	P	4.2781305	P	0.79179727093857	0	lncRNA	14068-1_{1..608}	lnc-SLC46A2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC46A2-2:1	chr9	115665537	115666144	-	lnc-SLC46A2-2	lnc-SLC46A2-2:1	XLOC_007831	linc-SLC46A2	NA	NA	NA	inter
CUST_26922_PI429285431	0.9092065	A	0.90333366	A	1.00407903921421	0	lncRNA	28440-1_{1..408}	n323998|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053552|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053552|-1.0710900|-0.2632123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323998|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053552|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053552|-1.0710900|-0.2632123	chr9	109222385	109222792	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14552_PI429285431	0.9062694	A	1.0809872	A	0.885940797609325	0	lncRNA	16221-1_{1..436}	lnc-RP11-105C20.2.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-105C20.2.1-2:1	chr16	 59445379	 59445814	-	lnc-RP11-105C20.2.1-2	lnc-RP11-105C20.2.1-2:1	XLOC_011971	linc-GOT2-3	NA	NA	NA	inter
LNCA_21_P0006440	0.8989164	A	1.3629359	A	0.724963617496697	0	lncRNA	ENST00000438499	NA	NA	NA	NA	XLOC_008108	NA	ENST00000438499	NA	NA	"BROAD Institute lincRNA (XLOC_008108), lincRNA [TCONS_00017036]"	chrX:6586064-6586005	hs|Xp22.31	Agilent_HUMAN_G3V2	ENST00000438499	ENST00000438499	chrX	  6586005	  6586064	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31471_PI429285431	2.40611	A	1.381999	A	2.0337058125416	0	lncRNA	33238-1_{1..2429}	n337951|AJ001714|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|336|NULL|9.5330100|-0.3337620	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337951|AJ001714|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|336|NULL|9.5330100|-0.3337620	chr15	 72244114	 72246542	-	NA	NA	NA	NA	MYO9A	NA	chr15:72234114-72348977	inner
LNCA_21_P0009621	1.4899441	A	1.1197866	A	1.29249392537759	0	lncRNA	TCONS_00026674	NA	NA	NA	NA	XLOC_012768	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012768), lincRNA [TCONS_00026674]"	chr18:11367038-11366979	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_00026674	TCONS_00026674	chr18	 11366979	 11367038	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11546_PI429285431	3.0410194	P	3.4401736	P	0.758302718462287	0	lncRNA	13119-1_{1..378}	lnc-SLITRK6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLITRK6-2:1	chr13	 85743219	 85743596	-	lnc-SLITRK6-2	lnc-SLITRK6-2:1	XLOC_010680	linc-SLITRK1-2	NA	NA	NA	inter
CUST_38220_PI429285431	6.5826263	P	6.647399	P	0.956095940894176	0	lncRNA	39284-1_{1..1241}	n381595|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lxw.3||1.2008300|-0.2367004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381595|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lxw.3||1.2008300|-0.2367004	chr11	  3402190	  3403430	+	NA	NA	NA	NA	ZNF195	NA	chr11:3392190-3400452	inter
CUST_6240_PI429285431	0.90932274	A	0.8949083	A	1.01004140841692	0	lncRNA	6165-1_{1..312}	"transcript_id ""ENST00000578673.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000578673.1"" | genecode_v17"	chr18	 63585018	 63585329	-	ENSG00000263622.1	ENST00000578673.1	RP11-389J22.3	RP11-389J22.3-001	NA	NA	NA	inter
CUST_44313_PI429285431	1.1418133	A	1.1540388	A	0.991561732876666	0	lncRNA	48945-1_{1..1146}	"gi|239788845|ref|NR_027764.1| Homo sapiens developmental pluripotency associated 2 pseudogene (LOC100128023), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|239788845|ref|NR_027764.1| Homo sapiens developmental pluripotency associated 2 pseudogene (LOC100128023), non-coding RNA"	Chr3	193710882	193712027	-	100128023	NR_027764.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002688	2.0673974	A	1.3236922	A	1.67447077905053	0	lncRNA	TCONS_00005292	NA	NA	NA	NA	XLOC_002433	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002433), lincRNA [TCONS_00005292]"	chr2:190294065-190212911	hs|2q32.2	Agilent_HUMAN_G3V2	TCONS_00005292	TCONS_00005292	chr2	190212911	190294065	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43250_PI429285431	2.4099827	A	2.1815977	A	1.17152277402493	0	lncRNA	48067-1_{1..371}	ENST00000597680 havana:sense_intronic chromosome:GRCh37:19:56220529:56220899:1 gene:ENSG00000269574 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000597680 havana:sense_intronic chromosome:GRCh37:19:56220529:56220899:1 gene:ENSG00000269574 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 56220529	 56220899	+	ENSG00000269574	ENST00000597680	NA	NA	NLRP9	NA	chr19:56218943-56230899	inner
LNCA_21_P0010059	8.122594	P	8.688046	P	0.675743671146778	0	lncRNA	TCONS_00028444	NA	NA	NA	NA	XLOC_013803	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013803), lincRNA [TCONS_00028444]"	chr20:52904298-52874003	hs|20q13.2	Agilent_HUMAN_G3V2	TCONS_00028444	TCONS_00028444	chr20	 52874003	 52904298	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004948	0.8882529	A	0.876784	A	1.00798131795147	0	lncRNA	TCONS_00011967	NA	NA	NA	NA	XLOC_005478	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005478), lincRNA [TCONS_00011967]"	chr6:138008290-138008349	hs|6q23.3	Agilent_HUMAN_G3V2	TCONS_00011967	TCONS_00011967	chr6	138008290	138008349	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27268_PI429285431	0.899945	A	0.8842104	A	1.01096608514725	0	lncRNA	28823-1_{1..511}	n324416|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041894|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041894|-1.1459800|-0.2376325	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324416|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041894|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041894|-1.1459800|-0.2376325	chr6	113856445	113856955	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_34563_PI429285431	0.8953828	A	0.88292354	A	1.00867349964272	0	lncRNA	36022-1_{1..2945}	n341443|AX746756|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3913|NULL|-1.0545600|-0.2052405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341443|AX746756|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3913|NULL|-1.0545600|-0.2052405	chr13	112711196	112714140	+	NA	NA	NA	NA	SOX1	NA	chr13:112721913-112726020	inner
CUST_20910_PI429285431	1.1075507	A	0.9993871	A	1.07785536570361	0	lncRNA	22541-1_{1..1190}	lnc-KIAA1267-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1267-3:2	chr17	 43971978	 43973167	-	lnc-KIAA1267-3	lnc-KIAA1267-3:2	ENSG00000264589.1	RP11-105N13.2	MAPT	NA	chr17:43971748-43982879	inner
LNCA_21_P0001698	2.2169387	A	1.7581999	A	1.37433984875636	0	lncRNA	TCONS_00001093	NA	NA	NA	NA	XLOC_000340	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000340), lincRNA [TCONS_00001093]"	chr1:110627658-110627717	hs|1p13.3	Agilent_HUMAN_G3V2	TCONS_00001093	TCONS_00001093	chr1	110627658	110627717	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43453_PI429285431	7.7486835	P	6.9262114	P	1.76843366046023	0	lncRNA	48258-2_{3001..4973}	"gi|371123532|ref|NR_045790.1| Homo sapiens NOP2/Sun domain family, member 4 (NSUN4), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371123532|ref|NR_045790.1| Homo sapiens NOP2/Sun domain family, member 4 (NSUN4), transcript variant 5, non-coding RNA"	Chr1	 46808849	 46810821	+	387338	NR_045790.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0,hg19_refFlat_SEPN1:range=chr1:26126722-261422095'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20"	NA	inter
LNCA_19_P00812050	3.0917745	P	2.6928985	A	1.31848028591142	0	lncRNA	TCONS_00008017	NA	NA	NA	NA	XLOC_003482	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003482), lincRNA [TCONS_00008017]"	chr4:26790562-26790621	hs|4p15.2	Agilent_HUMAN_G3V2	TCONS_00008017	TCONS_00008017	chr4	 26790562	 26790621	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00321571	4.1400194	P	4.31301	P	0.887002084469465	0	lncRNA	XR_108679	XR_108679	XR_108679	NA	NA	LOC100506647	uncharacterized LOC100506647	NA	THC2606443	NA	"PREDICTED: Homo sapiens hypothetical LOC100506647 (LOC100506647), miscRNA [XR_108679]"	chr6:14285417-14285358	hs|6p23	Agilent_HUMAN_G3V2	XR_108679	XR_108679	chr6	 14285358	 14285417	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13461_PI429285431	0.89764625	A	0.8977969	A	0.999895582829101	0	lncRNA	15099-1_{1..211}	lnc-NDN-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDN-3:1	chr15	 24588485	 24588695	-	lnc-NDN-3	lnc-NDN-3:1	XLOC_011403	linc-NDN-4	NA	NA	NA	inter
CUST_9121_PI429285431	6.4095554	P	6.2929034	P	1.08421584793507	0	lncRNA	10640-1_{1..1200}	lnc-MUTYH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MUTYH-1:1	chr1	 45770979	 45772178	-	lnc-MUTYH-1	lnc-MUTYH-1:1	ENSG00000246279	XLOC_000816	NA	NA	NA	inter
LNCA_21_P0000982	0.88382107	A	0.87961614	A	1.00291888705333	0	lncRNA	ENST00000455038	NA	NA	NA	NA	XLOC_000231	NA	ENST00000455038	NA	NA	"BROAD Institute lincRNA (XLOC_000231), lincRNA [TCONS_00000217]"	chr1:63628762-63628821	hs|1p31.3	Agilent_HUMAN_G3V2	ENST00000455038	ENST00000455038	chr1	 63628762	 63628821	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38966_PI429285431	0.907611	A	1.2672751	A	0.779346012219222	0	lncRNA	39949-2_{3001..3643}	n385185|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tsz.2||0.8589040|-0.3636076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385185|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003tsz.2||0.8589040|-0.3636076	chr7	 63816368	 63817010	+	NA	NA	NA	NA	ZNF736	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40chr7:63803368-63810017"	NA	inter
LNCA_21_P0004871	2.640056	A	2.7005637	A	0.958926603290267	0	lncRNA	THC2553854	NA	NA	NA	NA	XLOC_005244	NA	NA	THC2553854	NA	"BROAD Institute lincRNA (XLOC_005244), lincRNA [TCONS_00011775]"	chr6:031168307-031168366	hs|6p21.33	Agilent_HUMAN_G3V2	THC2553854	THC2553854	chr6	 31168307	 31168366	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49706_PI429285431	1.1467531	A	1.3174042	A	0.888441629744615	0	lncRNA	53483-1_{1..744}	hg19_lincRNAsTranscripts_TCONS_l2_00025706 range=chr7:20345411-20354142 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025706 range=chr7:20345411-20354142 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	 20345411	 20346154	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26668_PI429285431	5.504262	P	5.39907	P	1.07563753135572	0	lncRNA	28167-2_{3001..6000}	lnc-CEMP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CEMP1-1:1	chr16	  2618357	  2621356	-	lnc-CEMP1-1	lnc-CEMP1-1:1	ENSG00000261613.1	RP11-20I23.8	PDPK1	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-59.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_PDPK1:range=chr16:2588114-26476735'pad=0,hg19_refFlat_PDPK1:range=chr16:2588114-26476735'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.20;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.80;hg19_refFlat_PDPK1:range=chr16:2588114-26477685'pad=0,hg19_refFlat_PDPK1:range=chr16:2588114-26477685'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.11;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80chr16:2605357-2626295"	NA	inner
LNCA_21_P0008958	2.2070572	A	1.6340765	A	1.48759386165661	0	lncRNA	TCONS_00024436	NA	NA	NA	NA	XLOC_011753	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011753), lincRNA [TCONS_00024436]"	chr16:65173616-65173675	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024436	TCONS_00024436	chr16	 65173616	 65173675	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007072	1.8777039	A	1.5727929	A	1.23534242637956	0	lncRNA	ENST00000422848	NA	NA	NA	NA	XLOC_008574	NA	ENST00000422848	NA	NA	"BROAD Institute lincRNA (XLOC_008574), lincRNA [TCONS_00018787]"	chr10:99179205-99179264	hs|10q24.1	Agilent_HUMAN_G3V2	ENST00000422848	ENST00000422848	chr10	 99179205	 99179264	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11745_PI429285431	2.9272118	A	4.3074265	P	0.384161620634933	0	lncRNA	13325-1_{1..592}	lnc-ARIH2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARIH2-1:2	chr3	 48886420	 48887011	+	lnc-ARIH2-1	lnc-ARIH2-1:2	XLOC_002643	linc-ARIH2	SLC25A20	NA	chr3:48894356-48896618	inter
LNCA_21_P0013081	4.6211696	P	4.0742526	P	1.46096032530383	0	lncRNA	TCONS_l2_00024768	NA	NA	NA	NA	XLOC_l2_013000	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013000), lincRNA [TCONS_l2_00024768]"	chr6:44072132-44047377	hs|6p21.1	Agilent_HUMAN_G3V2	TCONS_l2_00024768	TCONS_l2_00024768	chr6	 44047377	 44072132	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008496	4.921622	P	5.2597523	P	0.791065851203031	0	lncRNA	TCONS_00022893	NA	NA	NA	NA	XLOC_011147	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011147), lincRNA [TCONS_00022893]"	chr14:103655705-103654764	hs|14q32.32	Agilent_HUMAN_G3V2	TCONS_00022893	TCONS_00022893	chr14	103654764	103655705	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7274_PI429285431	0.9072134	A	1.4636242	A	0.679991774469789	0	lncRNA	8121-1_{1..330}	"transcript_id ""ENST00000410439.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410439.1"" | genecode_v17"	chr10	 69917836	 69918165	+	ENSG00000222371.1	ENST00000410439.1	RN7SKP202	RN7SKP202-201	MYPN	NA	chr10:69907836-69928165	inner
CUST_29212_PI429285431	0.899144	A	0.90061164	A	0.998983226736515	0	lncRNA	30959-1_{1..1954}	n326733|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098494|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098494|0.2949180|-0.1991517	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326733|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000098494|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000098494|0.2949180|-0.1991517	chr1	  1934511	  1936464	-	NA	NA	NA	NA	KIAA1751	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20chr1:1924511-1935276"	NA	inner
CUST_39871_PI429285431	0.99424124	A	1.336266	A	0.788933300807203	0	lncRNA	40766-2_{3001..6000}	n406539|NR_024052_2|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_2||0.2729430|-0.2831099	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n406539|NR_024052_2|lncRNA|Homosapiens||RefGeneNoncode|NR_024052_2||0.2729430|-0.2831099	chr6	  1551842	  1554841	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50"	NA	inter
CUST_26557_PI429285431	7.5637136	P	4.6329865	P	7.62494589214087	0	lncRNA	28062-1_{1..472}	lnc-PDZD8-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDZD8-2:4	chr10	119254080	119254551	-	lnc-PDZD8-2	lnc-PDZD8-2:4	ENSG00000229847.2	EMX2OS	NA	NA	NA	inter
CUST_20661_PI429285431	0.923164	A	1.2329887	A	0.80673977916928	0	lncRNA	22300-1_{1..550}	lnc-PRB1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PRB1-1:2	chr12	 11639498	 11640047	-	lnc-PRB1-1	lnc-PRB1-1:2	ENSG00000255790.1	RP11-711K1.7	NA	NA	NA	inter
CUST_22042_PI429285431	1.142492	A	1.079376	A	1.04471976025581	0	lncRNA	23650-1_{1..550}	lnc-DYDC1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DYDC1-4:1	chr10	 83992496	 83993045	-	lnc-DYDC1-4	lnc-DYDC1-4:1	ENSG00000225738.2	NRG3-AS1	NRG3	NA	chr10:83982496-84002676	inner
CUST_27999_PI429285431	3.6003206	P	3.5725746	P	1.01941818905959	0	lncRNA	29608-1_{1..373}	n325253|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330276|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330276|-1.0796600|-0.1700655	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325253|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000330276|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000330276|-1.0796600|-0.1700655	chr2	 70968508	 70968880	+	NA	NA	NA	NA	ADD2	NA	chr2:70958508-70978986	inner
LNCA_21_P0008275	0.8853583	A	0.88054436	A	1.00334234214897	0	lncRNA	ENST00000556913	NA	AK092589	NA	Hs.99743	XLOC_011017	NA	ENST00000556913	THC2524833	NA	"BROAD Institute lincRNA (XLOC_011017), lincRNA [TCONS_00022368]"	chr14:50410354-50410295	hs|14q21.3	Agilent_HUMAN_G3V2	ENST00000556913	ENST00000556913	chr14	 50410295	 50410354	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22597_PI429285431	0.8868388	A	0.87758213	A	1.00643686284052	0	lncRNA	24181-1_{1..514}	lnc-LMBR1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LMBR1-1:1	chr7	156469080	156469593	-	lnc-LMBR1-1	lnc-LMBR1-1:1	ENSG00000225666.1	AC005534.9	LMBR1	"hg19_refFlat_RNF32:range=chr7:156436572-1564693495'pad=0,hg19_refFlat_RNF32:range=chr7:156436572-1564693495'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.00chr7:156473570-156479257"	NA	inner
CUST_46618_PI429285431	6.7003326	P	7.7945905	P	0.468376987636825	0	lncRNA	50795-1_{1..538}	"gi|374717324|ref|NR_046289.1| Homo sapiens uncharacterized LOC100289092 (LOC100289092), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|374717324|ref|NR_046289.1| Homo sapiens uncharacterized LOC100289092 (LOC100289092), transcript variant 3, non-coding RNA"	Chr16	 28890278	 28890815	-	100289092	NR_046289.1	NA	NA	NA	"hg19_refFlat_ATP2A1:range=chr16:28889993-289150255'pad=0,hg19_refFlat_ATP2A1:range=chr16:28889993-289150255'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ATP2A1:range=chr16:28889993-289155265'pad=0,hg19_refFlat_ATP2A1:range=chr16:28889993-289155265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30"	NA	inter
CUST_48911_PI429285431	6.7387853	P	6.9731617	P	0.850052351962914	0	lncRNA	52753-1_{1..726}	hg19_lincRNAsTranscripts_TCONS_l2_00019492 range=chr3:125626798-125627926 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019492 range=chr3:125626798-125627926 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	125626798	125627523	-	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30"	NA	inter
CUST_51717_PI429285431	6.361971	P	6.3138514	P	1.03391644478501	0	lncRNA	55274-1_{1..1060}	hg19_lincRNAsTranscripts_TCONS_l2_00011972 range=chr18:11621415-11634311 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011972 range=chr18:11621415-11634311 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 11621415	 11622474	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30741_PI429285431	0.9084203	A	0.90958154	A	0.999195413621391	0	lncRNA	32525-1_{1..239}	n336307|Y18488|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326090_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326090_08|-1.1848000|-0.2315401	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336307|Y18488|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326090_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326090_08|-1.1848000|-0.2315401	chr6	  2897861	  2898099	+	NA	NA	NA	NA	SERPINB9	NA	chr6:2887861-2903545	inner
CUST_11531_PI429285431	2.7620997	A	2.6597397	A	1.07352813365337	0	lncRNA	13103-1_{1..579}	lnc-PAPPA2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAPPA2-1:1	chr1	176198225	176198803	+	lnc-PAPPA2-1	lnc-PAPPA2-1:1	XLOC_000471	linc-PAPPA2-1	NA	NA	NA	inter
CUST_43029_PI429285431	0.9115383	A	0.9095839	A	1.00135560485241	0	lncRNA	46441-1_{1..131}	ENST00000408328 ncrna:snRNA chromosome:GRCh37:2:7716972:7717102:1 gene:ENSG00000221255 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408328 ncrna:snRNA chromosome:GRCh37:2:7716972:7717102:1 gene:ENSG00000221255 gene_biotype:snRNA transcript_biotype:snRNA	chr2	  7716972	  7717102	+	ENSG00000221255	ENST00000408328	NA	NA	NA	NA	NA	inter
LNCA_21_P0014209	3.8146534	P	4.3958306	P	0.668418143747139	0	lncRNA	ENST00000523121	XR_108870	XR_108870	NA	NA	LOC100506652	NA	ENST00000523121	THC2722757	NA	"PREDICTED: Homo sapiens hypothetical LOC100506652 (LOC100506652), miscRNA [XR_108870]"	chr8:102273835-102273776	hs|8q22.3	Agilent_HUMAN_G3V2	ENST00000523121	ENST00000523121	chr8	102273776	102273835	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29902_PI429285431	3.246954	A	3.991688	P	0.596777893579991	0	lncRNA	31665-1_{1..211}	n333994|M16797|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194481|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194481|1.2729900|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333994|M16797|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194481|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194481|1.2729900|-1.0000000	chr13	 25264476	 25264686	+	NA	NA	NA	NA	ATP12A	NA	chr13:25254549-25274819	inner
CUST_33854_PI429285431	6.044553	P	6.02083	P	1.01657946949633	0	lncRNA	35398-1_{1..2327}	n340640|AK097047|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3102|NULL|3.5102100|-0.1371729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340640|AK097047|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3102|NULL|3.5102100|-0.1371729	chr17	 36886611	 36888937	+	NA	NA	NA	NA	PCGF2	NA	chr17:36890150-36901297	inner
CUST_51999_PI429285431	0.8912692	A	2.0175128	A	0.458106964146744	0	lncRNA	55533-1_{1..488}	hg19_lincRNAsTranscripts_TCONS_l2_00017127 range=chr21:10450461-10464354 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017127 range=chr21:10450461-10464354 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 10450461	 10450948	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_47596_PI429285431	2.6126552	A	2.1435332	A	1.38426677017642	0	lncRNA	51599-1_{1..1721}	"gi|224494000|ref|NR_027139.1| Homo sapiens spindlin family, member 3 (SPIN3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224494000|ref|NR_027139.1| Homo sapiens spindlin family, member 3 (SPIN3), transcript variant 2, non-coding RNA"	ChrX	 57002803	 57004523	-	169981	NR_027139.1	NA	NA	NA	NA	NA	inter
CUST_13537_PI429285431	0.9097712	A	0.91110027	A	0.99907918308906	0	lncRNA	15176-1_{1..541}	lnc-SLC35G4-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-SLC35G4-1:5	chr18	 11506756	 11507296	+	lnc-SLC35G4-1	lnc-SLC35G4-1:5	XLOC_012626	linc-GNAL-1	NA	NA	NA	inter
CUST_13548_PI429285431	1.3059824	A	1.095164	A	1.15734452646754	0	lncRNA	15188-1_{1..1092}	lnc-WSCD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WSCD1-1:1	chr17	  5677245	  5678336	+	lnc-WSCD1-1	lnc-WSCD1-1:1	XLOC_012093	linc-WSCD1-1	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40"	NA	inter
LNCA_21_P0013496	2.6687808	A	1.7265828	A	1.9214534161154	0	lncRNA	TCONS_l2_00027818	NA	NA	NA	NA	XLOC_l2_014234	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014234), lincRNA [TCONS_l2_00027818]"	chr8:64699875-64699934	hs|8q12.3	Agilent_HUMAN_G3V2	TCONS_l2_00027818	TCONS_l2_00027818	chr8	 64699875	 64699934	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43345_PI429285431	2.9011295	A	2.374116	A	1.44094323238231	0	lncRNA	48168-3_{6001..6776}	"gi|383276539|ref|NR_047519.1| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|383276539|ref|NR_047519.1| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 1, non-coding RNA"	Chr1	   768971	   769746	+	643837	NR_047519.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001514	0.92799395	A	0.98587936	A	0.960671164858341	0	lncRNA	THC2695938	NA	NA	NA	NA	XLOC_000852	NA	NA	THC2695938	NA	"BROAD Institute lincRNA (XLOC_000852), lincRNA [TCONS_00001509]"	chr1:059761125-059761066	hs|1p32.1	Agilent_HUMAN_G3V2	THC2695938	THC2695938	chr1	 59761066	 59761125	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002689	3.3917816	P	3.6182084	P	0.854749275547983	0	lncRNA	THC2695122	NA	NA	NA	NA	XLOC_002461	NA	NA	THC2695122	NA	"BROAD Institute lincRNA (XLOC_002461), lincRNA [TCONS_00005314]"	chr2:201979592-201979533	hs|2q33.1	Agilent_HUMAN_G3V2	THC2695122	THC2695122	chr2	201979533	201979592	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33570_PI429285431	0.9139429	A	0.91223365	A	1.0011854639259	0	lncRNA	35135-1_{1..296}	n340321|AF009312|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2782|NULL|-0.8427620|-0.3610280	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340321|AF009312|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2782|NULL|-0.8427620|-0.3610280	chr5	  8659875	  8660170	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011317	3.411211	P	3.4917789	P	0.945685315503845	0	lncRNA	TCONS_l2_00008603	NA	NA	NA	NA	XLOC_l2_004640	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004640), lincRNA [TCONS_l2_00008603]"	chr15:42930276-42930952	hs|15q15.2	Agilent_HUMAN_G3V2	TCONS_l2_00008603	TCONS_l2_00008603	chr15	 42930276	 42930952	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23035_PI429285431	6.6105056	P	6.811381	P	0.870022489946984	0	lncRNA	24606-1_{1..489}	lnc-CTC-349C3.2.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTC-349C3.2.1-1:3	chr5	134583303	134583791	-	lnc-CTC-349C3.2.1-1	lnc-CTC-349C3.2.1-1:3	ENSG00000249647.2	CTC-349C3.2	NA	NA	NA	inter
CUST_37218_PI429285431	0.92269194	A	1.20133	A	0.824368874772129	0	lncRNA	38330-1_{1..2539}	n345653|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1202|NULL|-1.6173300|-0.3872868	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345653|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1202|NULL|-1.6173300|-0.3872868	chr4	128758921	128761459	+	NA	NA	NA	NA	HSPA4L	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-42.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-32.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.34;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50chr4:128748921-128754522"	NA	inter
CUST_22414_PI429285431	0.92637277	A	0.97736835	A	0.965269982175043	0	lncRNA	24003-1_{1..675}	lnc-KHDRBS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KHDRBS2-1:1	chr6	 62390792	 62391466	-	lnc-KHDRBS2-1	lnc-KHDRBS2-1:1	ENSG00000250686.1	RP1-240B8.3	KHDRBS2	NA	chr6:62389865-62400954	inner
CUST_23366_PI429285431	2.4538348	A	2.231637	A	1.16650929251281	0	lncRNA	24935-1_{1..481}	lnc-OR13G1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR13G1-1:2	chr1	247803150	247803630	-	lnc-OR13G1-1	lnc-OR13G1-1:2	ENSG00000236817.1	RP11-978I15.10	NA	NA	NA	inter
CUST_46123_PI429285431	6.542329	P	4.1956515	P	5.08651486052034	0	lncRNA	50383-1_{1..3000}	"gi|238814329|ref|NR_027752.1| Homo sapiens aldehyde dehydrogenase 1 family, member L2 (ALDH1L2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|238814329|ref|NR_027752.1| Homo sapiens aldehyde dehydrogenase 1 family, member L2 (ALDH1L2), transcript variant 2, non-coding RNA"	Chr12	105413562	105416561	-	160428	NR_027752.1	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70"	NA	inter
CUST_48560_PI429285431	4.929417	P	5.3924026	P	0.725483345161938	0	lncRNA	52408-1_{1..669}	hg19_lincRNAsTranscripts_TCONS_l2_00015574 range=chr2:201560562-201596038 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015574 range=chr2:201560562-201596038 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	201560562	201561230	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41634_PI429285431	1.9608903	A	3.221795	P	0.417282204047118	0	lncRNA	43027-1_{1..83}	ENST00000362287 ncrna:miRNA chromosome:GRCh37:14:23857799:23857881:-1 gene:ENSG00000199157 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362287 ncrna:miRNA chromosome:GRCh37:14:23857799:23857881:-1 gene:ENSG00000199157 gene_biotype:miRNA transcript_biotype:miRNA	chr14	 23857799	 23857881	-	ENSG00000199157	ENST00000362287	NA	NA	MYH6	NA	chr14:23851199-23867881	inner
CUST_30729_PI429285431	2.7867334	A	2.9714444	A	0.879825304466868	0	lncRNA	32512-1_{1..332}	n336281|Y12722|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325731|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325731|1.6324200|-0.2990513	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336281|Y12722|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325731|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325731|1.6324200|-0.2990513	chr22	 22735427	 22735758	+	NA	NA	NA	NA	ZNF280B	NA	chr22:22804696-22863505	inner
LNCA_21_P0012260	10.433568	P	9.933459	P	1.41432041454719	0	lncRNA	TCONS_l2_00017652	NA	NA	NA	NA	XLOC_l2_009328	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009328), lincRNA [TCONS_l2_00017652]"	chr22:24658564-24658623	hs|22q11.23	Agilent_HUMAN_G3V2	TCONS_l2_00017652	TCONS_l2_00017652	chr22	 24658564	 24658623	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005828	2.4959497	A	2.663306	A	0.890472954820123	0	lncRNA	TCONS_00014998	NA	NA	NA	NA	XLOC_007078	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007078), lincRNA [TCONS_00014998]"	chr8:47730696-47730637	hs|8q11.1	Agilent_HUMAN_G3V2	TCONS_00014998	TCONS_00014998	chr8	 47730637	 47730696	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014473	8.549989	P	8.514573	P	1.02485229579848	0	lncRNA	ENST00000458030	XR_109990	XR_109990	NA	NA	LOC100506338	NA	ENST00000458030	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506338 (LOC100506338), miscRNA [XR_109990]"	chr2:54307372-54307431	hs|2p16.2	Agilent_HUMAN_G3V2	ENST00000458030	ENST00000458030	chr2	 54307372	 54307431	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11850_PI429285431	4.794243	P	5.384998	P	0.663995330007487	0	lncRNA	13427-1_{1..452}	lnc-MRPS9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRPS9-2:1	chr2	105721757	105722208	+	lnc-MRPS9-2	lnc-MRPS9-2:1	XLOC_001608	linc-GPR45-2	MRPS9	NA	chr2:105711757-105716418	inter
LNCA_21_P0001330	0.8879589	A	0.8764358	A	1.00801918708676	0	lncRNA	TCONS_00001012	NA	NA	NA	NA	XLOC_000278	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000278), lincRNA [TCONS_00001012]"	chr1:86093882-86093941	hs|1p22.3	Agilent_HUMAN_G3V2	TCONS_00001012	TCONS_00001012	chr1	 86093882	 86093941	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013034	0.8888282	A	0.8772132	A	1.00808340018185	0	lncRNA	TCONS_l2_00024370	NA	NA	NA	NA	XLOC_l2_012678	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012678), lincRNA [TCONS_l2_00024370]"	chr6:109657682-109658619	hs|6q21	Agilent_HUMAN_G3V2	TCONS_l2_00024370	TCONS_l2_00024370	chr6	109657682	109658619	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012195	0.8892481	A	0.8778462	A	1.00793450751806	0	lncRNA	TCONS_l2_00017187	NA	NA	NA	NA	XLOC_l2_009182	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009182), lincRNA [TCONS_l2_00017187]"	chr21:29803767-29803708	hs|21q21.3	Agilent_HUMAN_G3V2	TCONS_l2_00017187	TCONS_l2_00017187	chr21	 29803708	 29803767	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20977_PI429285431	1.9857377	A	2.9371238	A	0.517135374335699	0	lncRNA	22606-1_{1..544}	lnc-B3GALT5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-B3GALT5-1:1	chr21	 41097765	 41098308	+	lnc-B3GALT5-1	lnc-B3GALT5-1:1	ENSG00000225330.1	AF064860.5	NA	NA	NA	inter
LNCA_21_P0001480	5.177923	P	5.3061547	P	0.914952212987696	0	lncRNA	THC2655527	NA	NA	NA	NA	XLOC_000743	NA	NA	THC2655527	NA	"BROAD Institute lincRNA (XLOC_000743), lincRNA [TCONS_00001427]"	chr1:024822864-024822805	hs|1p36.11	Agilent_HUMAN_G3V2	THC2655527	THC2655527	chr1	 24822805	 24822864	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0000966	0.88525236	A	0.8800795	A	1.0035919891104	0	lncRNA	ENST00000452971	NA	NA	NA	NA	XLOC_000150	NA	ENST00000452971	THC2715439	NA	"BROAD Institute lincRNA (XLOC_000150), lincRNA [TCONS_00000188]"	chr1:38942094-38942153	hs|1p34.3	Agilent_HUMAN_G3V2	ENST00000452971	ENST00000452971	chr1	 38942094	 38942153	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51574_PI429285431	2.9775453	A	3.2780797	P	0.811951579284693	0	lncRNA	55139-1_{1..448}	hg19_lincRNAsTranscripts_TCONS_l2_00010604 range=chr17:19519134-19529455 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010604 range=chr17:19519134-19529455 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 19519134	 19519581	+	NA	NA	NA	NA	ALDH3A2	NA	chr17:19509134-19539455	inter
LNCA_21_P0003117	5.1238728	P	6.3074875	P	0.440247067694491	0	lncRNA	ENST00000421735	NA	NA	NA	NA	XLOC_003123	NA	ENST00000421735	THC2719076	NA	"BROAD Institute lincRNA (XLOC_003123), lincRNA [TCONS_00006510]"	chr3:50304174-50304115	hs|3p21.31	Agilent_HUMAN_G3V2	ENST00000421735	ENST00000421735	chr3	 50304115	 50304174	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014810	0.926794	A	0.9561888	A	0.979831243414569	0	lncRNA	ENST00000485835	XR_132636	XR_132636	NA	NA	PSMD3	"proteasome (prosome, macropain) 26S subunit, non-ATPase, 3"	ENST00000485835	THC2499305	GO:0002474|GO:0000216|GO:0031145|GO:0005829|GO:0000084|GO:0034641|GO:0000082|GO:0016032|GO:0030234|GO:0006977|GO:0000209|GO:0000502|GO:0016070|GO:0042176|GO:0016071|GO:0006521|GO:0051437|GO:0006915|GO:0042981|GO:0051436|GO:0051439|GO:0005488|GO:0000075|GO:0005654|GO:0000278	"PREDICTED: Homo sapiens hypothetical LOC100505620 (LOC100505620), miscRNA [XR_132636]"	chr17:38150141-38150200	hs|17q21.1	Agilent_HUMAN_G3V2	ENST00000485835	ENST00000485835	chr17	 38150141	 38150200	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002873	0.9287088	A	1.7944422	A	0.548767367809654	0	lncRNA	ENST00000481624	NA	BC033333	NA	Hs.385630	XLOC_003218	NA	ENST00000481624	NA	NA	"BROAD Institute lincRNA (XLOC_003218), lincRNA [TCONS_00005818]"	chr3:112457656-112457597	hs|3q13.2	Agilent_HUMAN_G3V2	ENST00000481624	ENST00000481624	chr3	112457597	112457656	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8611_PI429285431	6.594588	P	6.075156	P	1.43339080005971	0	lncRNA	10165-1_{1..3000}	lnc-OSBP2-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OSBP2-2:8	chr22	 31371156	 31374155	+	lnc-OSBP2-2	lnc-OSBP2-2:8	ENSG00000253352	XLOC_014209	MORC2	NA	chr22:31361156-31364187	inter
LNCA_21_P0010361	0.9222176	A	0.9677044	A	0.968962810414872	0	lncRNA	ENST00000434516	NA	AK057489	NA	Hs.542704	XLOC_014247	NA	ENST00000434516	THC2516076	NA	"BROAD Institute lincRNA (XLOC_014247), lincRNA [TCONS_00029426]"	chr22:39690767-39690826	hs|22q13.1	Agilent_HUMAN_G3V2	ENST00000434516	ENST00000434516	chr22	 39690767	 39690826	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001799	1.657516	A	0.95789087	A	1.62408273608735	0	lncRNA	BC038530	NA	BC038530	NA	Hs.622883	XLOC_002473	NA	NA	THC2605379	NA	"BROAD Institute lincRNA (XLOC_002473), lincRNA [TCONS_00002775]"	chr2:208084511-208084452	hs|2q33.3	Agilent_HUMAN_G3V2	BC038530	BC038530	chr2	208084452	208084511	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004853	4.916658	P	5.4208307	P	0.705064574365108	0	lncRNA	TCONS_00011734	NA	NA	NA	NA	XLOC_005201	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005201), lincRNA [TCONS_00011734]"	chr6:23370350-23370409	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00011734	TCONS_00011734	chr6	 23370350	 23370409	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52158_PI429285431	5.2683897	P	5.7072835	P	0.737700030287484	0	lncRNA	55681-2_{3001..3757}	hg19_lincRNAsTranscripts_TCONS_l2_00017931 range=chr22:23734180-23739028 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017931 range=chr22:23734180-23739028 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 23737180	 23737936	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC388849:range=chr22:20136137-201372615'pad=0,hg19_refFlat_LOC388849:range=chr22:20136137-201372615'pad=0 3'pad=0 strand=- repeatMasking=none,-98.30"	NA	inter
CUST_31944_PI429285431	3.2333908	A	3.5319595	P	0.81305863309363	0	lncRNA	33671-1_{1..2040}	n338501|AK124080|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|898|NULL|1.0740900|-0.1963714	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338501|AK124080|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|898|NULL|1.0740900|-0.1963714	chr19	 34397256	 34399295	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_19_P00318059	3.4149563	P	3.0407627	P	1.29611488368959	0	lncRNA	TCONS_l2_00025239	NA	NA	NA	NA	XLOC_l2_012721	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012721), lincRNA [TCONS_l2_00025239]"	chr6:132228611-132228670	hs|6q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00025239	TCONS_l2_00025239	chr6	132228611	132228670	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15927_PI429285431	0.9299173	A	0.9886196	A	0.960127362799394	0	lncRNA	17623-1_{1..565}	lnc-WRNIP1-2:20	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WRNIP1-2:20	chr6	  2283733	  2284297	+	lnc-WRNIP1-2	lnc-WRNIP1-2:20	XLOC_005126	linc-WRNIP1-3	NA	NA	NA	inter
CUST_34377_PI429285431	3.0182266	A	3.3539534	A	0.792384848901638	0	lncRNA	35863-1_{1..3000}	n341246|BC036204|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3714|NULL|-0.9067910|-0.2992945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341246|BC036204|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3714|NULL|-0.9067910|-0.2992945	chr7	 48491788	 48494787	-	NA	NA	NA	NA	ABCA13	"hg19_refFlat_ABCA13:range=chr7:48211081-486851085'pad=0,hg19_refFlat_ABCA13:range=chr7:48211081-486851085'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.20chr7:48481788-48505224"	NA	inner
CUST_32602_PI429285431	3.5486176	P	4.1037645	P	0.680587755016126	0	lncRNA	34263-1_{1..3000}	n339223|AK124871|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1655|NULL|-1.0995300|-0.1870957	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339223|AK124871|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1655|NULL|-1.0995300|-0.1870957	chr2	242428942	242431941	-	NA	NA	NA	NA	FARP2	"hg19_refFlat_FARP2:range=chr2:242312523-2424335405'pad=0,hg19_refFlat_FARP2:range=chr2:242312523-2424335405'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.50chr2:242418942-242434256"	NA	inner
CUST_33811_PI429285431	1.6159633	A	1.9645852	A	0.785333911191487	0	lncRNA	35361-1_{1..900}	n340598|BC017904|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3060|NULL|-1.0766600|-0.3856666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340598|BC017904|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3060|NULL|-1.0766600|-0.3856666	chr5	118463896	118464795	+	NA	NA	NA	NA	DMXL1	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60chr5:118453896-118474783"	NA	inner
LNCA_21_P0004368	0.89051	A	0.8943352	A	0.997352085331859	0	lncRNA	TCONS_00010283	NA	NA	NA	NA	XLOC_004755	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004755), lincRNA [TCONS_00010283]"	chr5:24839004-24838945	hs|5p14.1	Agilent_HUMAN_G3V2	TCONS_00010283	TCONS_00010283	chr5	 24838945	 24839004	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004377	1.8216714	A	0.89279556	A	1.90379196741105	0	lncRNA	TCONS_00010299	NA	NA	NA	NA	XLOC_004777	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004777), lincRNA [TCONS_00010299]"	chr5:35318501-35318442	hs|5p13.2	Agilent_HUMAN_G3V2	TCONS_00010299	TCONS_00010299	chr5	 35318442	 35318501	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10263_PI429285431	4.422379	P	4.5577426	P	0.910440347928089	0	lncRNA	11789-1_{1..612}	lnc-CPEB4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CPEB4-1:2	chr5	173220683	173221294	+	lnc-CPEB4-1	lnc-CPEB4-1:2	XLOC_004644	linc-CPEB4-1	NA	NA	NA	inter
CUST_30009_PI429285431	0.9034602	A	2.0454838	A	0.453123556753987	0	lncRNA	31777-1_{1..285}	n334434|U09078|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000217875|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000217875|2.0306100|-0.1151179	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334434|U09078|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000217875|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000217875|2.0306100|-0.1151179	chr2	 90198913	 90199197	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006196	6.032274	P	6.3536415	P	0.800310920216452	0	lncRNA	TCONS_00016108	NA	NA	NA	NA	XLOC_007497	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007497), lincRNA [TCONS_00016108]"	chr9:106787023-106790285	hs|9q31.1	Agilent_HUMAN_G3V2	TCONS_00016108	TCONS_00016108	chr9	106787023	106790285	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47541_PI429285431	9.553188	P	9.544295	P	1.00618319539454	0	lncRNA	51551-1_{1..3000}	"gi|237757298|ref|NR_027691.1| Homo sapiens pannexin 2 (PANX2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237757298|ref|NR_027691.1| Homo sapiens pannexin 2 (PANX2), transcript variant 3, non-coding RNA"	Chr22	 50609160	 50612159	+	56666	NR_027691.1	NA	NA	NA	NA	NA	inter
CUST_36165_PI429285431	3.3911924	P	3.0356672	P	1.2794512690981	0	lncRNA	37438-1_{1..1381}	n344726|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_275|NULL|-1.3247900|-0.2405751	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344726|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_275|NULL|-1.3247900|-0.2405751	chr20	 31161277	 31162657	-	NA	NA	NA	NA	LOC284804	NA	chr20:31151277-31173628	inner
CUST_22120_PI429285431	0.8951584	A	0.8887395	A	1.00445915501213	0	lncRNA	23724-1_{1..434}	lnc-FAM86A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM86A-2:2	chr16	  5661236	  5661669	-	lnc-FAM86A-2	lnc-FAM86A-2:2	ENSG00000260338.1	RP11-124K4.1	NA	NA	NA	inter
LNCA_21_P0005218	0.8860017	A	0.8766242	A	1.00652115845071	0	lncRNA	ENST00000489284	NA	NA	NA	NA	XLOC_006028	NA	ENST00000489284	NA	NA	"BROAD Institute lincRNA (XLOC_006028), lincRNA [TCONS_00014097]"	chr7:27443914-27448456	hs|7p15.2	Agilent_HUMAN_G3V2	ENST00000489284	ENST00000489284	chr7	 27443914	 27448456	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014461	0.8869116	A	0.8761472	A	1.00748921846944	0	lncRNA	XR_109940	XR_109940	XR_109940	NA	NA	LOC100506934	uncharacterized LOC100506934	NA	THC2700292	NA	"PREDICTED: Homo sapiens hypothetical LOC100506934 (LOC100506934), miscRNA [XR_109940]"	chr2:60745599-60745540	hs|2p16.1	Agilent_HUMAN_G3V2	XR_109940	XR_109940	chr2	 60745540	 60745599	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014435	4.015779	P	3.70799	P	1.23780924297705	0	lncRNA	ENST00000453528	XR_109775	XR_109775	NA	Hs.667773	LOC100287728	NA	ENST00000453528	THC2605361	NA	"PREDICTED: Homo sapiens hypothetical LOC100287728 (LOC100287728), miscRNA [XR_109775]"	chrX:134257470-134257529	hs|Xq26.3	Agilent_HUMAN_G3V2	ENST00000453528	ENST00000453528	chrX	134257470	134257529	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014935	8.961227	P	9.230879	P	0.829519614438997	0	lncRNA	ENST00000426200	XR_133341	XR_133341	NA	Hs.517821	LOC100505641	NA	ENST00000426200	THC2496445	NA	"PREDICTED: Homo sapiens hypothetical LOC100505641 (LOC100505641), miscRNA [XR_133341]"	chr3:14986553-14986494	hs|3p25.1	Agilent_HUMAN_G3V2	ENST00000426200	ENST00000426200	chr3	 14986494	 14986553	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002893	4.4108496	P	4.884197	P	0.720291407845688	0	lncRNA	ENST00000498604	NA	NA	NA	NA	XLOC_003296	NA	ENST00000498604	NA	NA	"BROAD Institute lincRNA (XLOC_003296), lincRNA [TCONS_00005853]"	chr3:154229384-154229325	hs|3q25.2	Agilent_HUMAN_G3V2	ENST00000498604	ENST00000498604	chr3	154229325	154229384	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014246	0.8895271	A	1.2710143	A	0.767645856065699	0	lncRNA	ENST00000443016	XR_109008	XR_109008	NA	Hs.688100	LOC100507213	NA	ENST00000443016	THC2525092	NA	"PREDICTED: Homo sapiens hypothetical LOC100507213 (LOC100507213), miscRNA [XR_109008]"	chr10:11605707-11605648	hs|10p14	Agilent_HUMAN_G3V2	ENST00000443016	ENST00000443016	chr10	 11605648	 11605707	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007186	0.88947004	A	0.8796	A	1.00686484616882	0	lncRNA	TCONS_00019254	NA	NA	NA	NA	XLOC_009085	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009085), lincRNA [TCONS_00019254]"	chr11:21816432-21839746	hs|11p14.3	Agilent_HUMAN_G3V2	TCONS_00019254	TCONS_00019254	chr11	 21816432	 21839746	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001864	2.039071	A	2.6485507	A	0.655433037615784	0	lncRNA	ENST00000416845	NA	NA	NA	NA	XLOC_001493	NA	ENST00000416845	NA	NA	"BROAD Institute lincRNA (XLOC_001493), lincRNA [TCONS_00002902]"	chr2:62690334-62690393	hs|2p15	Agilent_HUMAN_G3V2	ENST00000416845	ENST00000416845	chr2	 62690334	 62690393	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47694_PI429285431	0.90051633	A	0.89786744	A	1.00183775724489	0	lncRNA	51666-2_{3001..6000}	"gi|385137097|ref|NR_047635.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 65, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137097|ref|NR_047635.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 65, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047635.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0013312	3.9640377	P	4.7056856	P	0.598055840365608	0	lncRNA	TCONS_l2_00026602	NA	NA	NA	NA	XLOC_l2_013853	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013853), lincRNA [TCONS_l2_00026602]"	chr7:57712143-57712084	hs|7p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00026602	TCONS_l2_00026602	chr7	 57712084	 57712143	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19738_PI429285431	0.91369176	A	1.6245723	A	0.610947137219442	0	lncRNA	21396-1_{1..633}	lnc-SPACA3-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPACA3-3:3	chr17	 31951108	 31951740	+	lnc-SPACA3-3	lnc-SPACA3-3:3	ENSG00000265125.1	RP11-31I22.3	ACCN1	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70chr17:31941108-31961141"	NA	inner
LNCA_21_P0003459	0.8818487	A	0.8791052	A	1.00190345857157	0	lncRNA	TCONS_00007751	NA	NA	NA	NA	XLOC_003937	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003937), lincRNA [TCONS_00007751]"	chr4:41878639-41878580	hs|4p13	Agilent_HUMAN_G3V2	TCONS_00007751	TCONS_00007751	chr4	 41878580	 41878639	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_889_PI429285431	1.6378284	A	1.2352343	A	1.32188264319927	0	lncRNA	878-1_{1..765}	"transcript_id ""ENST00000422793.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422793.1"" | genecode_v17"	chr2	 59151737	 59152501	+	ENSG00000233723.3	ENST00000422793.1	AC007092.1	AC007092.1-007	NA	NA	NA	inter
CUST_17183_PI429285431	1.0417554	A	1.4240158	A	0.767234553097877	0	lncRNA	18894-1_{1..790}	lnc-FGFRL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGFRL1-3:1	chr4	  1045003	  1045792	+	lnc-FGFRL1-3	lnc-FGFRL1-3:1	XLOC_003417	linc-MAEA-4	NA	NA	NA	inter
CUST_49493_PI429285431	0.91843534	A	0.93302995	A	0.989934783997961	0	lncRNA	53285-1_{1..636}	hg19_lincRNAsTranscripts_TCONS_l2_00024036 range=chr6:11417283-11481292 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024036 range=chr6:11417283-11481292 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 11417283	 11417918	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44997_PI429285431	9.57573	P	9.2201185	P	1.27952780637309	0	lncRNA	49506-1_{1..3000}	"gi|392306976|ref|NR_038343.2| Homo sapiens MAGI2 antisense RNA 3 (MAGI2-AS3), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|392306976|ref|NR_038343.2| Homo sapiens MAGI2 antisense RNA 3 (MAGI2-AS3), transcript variant 1, non-coding RNA"	Chr7	 79083276	 79086275	+	100505881	NR_038343.2	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60"	NA	inter
CUST_46763_PI429285431	13.142309	P	12.818936	P	1.25125254200694	0	lncRNA	50913-1_{1..1067}	"gi|343962623|ref|NR_045022.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 25, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|343962623|ref|NR_045022.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 25, non-coding RNA"	Chr17	 16342301	 16343367	+	125144	NR_045022.1	NA	NA	NA	NA	NA	inter
CUST_36296_PI429285431	1.0831549	A	1.413956	A	0.795094860715677	0	lncRNA	37527-1_{1..658}	n344822|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_371|NULL|-1.1623600|-0.3927565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344822|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_371|NULL|-1.1623600|-0.3927565	chr5	 61937939	 61938596	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49019_PI429285431	4.936797	P	5.8309608	P	0.538058969049174	0	lncRNA	52847-1_{1..648}	hg19_lincRNAsTranscripts_TCONS_l2_00021021 range=chr4:3923124-3954902 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021021 range=chr4:3923124-3954902 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	  3923124	  3923771	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014662	2.1446862	A	1.9472053	A	1.14669435479525	0	lncRNA	XR_110944	XR_110944	XR_110944	NA	NA	LOC100507395	uncharacterized LOC100507395	NA	THC2720718	NA	"PREDICTED: Homo sapiens hypothetical LOC100507395 (LOC100507395), miscRNA [XR_110944]"	chrUn_gl000220:4692-4633	NA	Agilent_HUMAN_G3V2	XR_110944	XR_110944	chrUn_gl000220	     4633	     4692	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012851	6.591373	P	6.6853786	P	0.936917810102512	0	lncRNA	TCONS_l2_00022555	NA	NA	NA	NA	XLOC_l2_011793	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011793), lincRNA [TCONS_l2_00022555]"	chr5:141906861-141906920	hs|5q31.3	Agilent_HUMAN_G3V2	TCONS_l2_00022555	TCONS_l2_00022555	chr5	141906861	141906920	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3657_PI429285431	3.5954192	P	4.198412	P	0.658386746805627	0	lncRNA	3626-1_{1..321}	"transcript_id ""ENST00000418875.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418875.1"" | genecode_v17"	chr10	 36727544	 36727864	+	ENSG00000237002.1	ENST00000418875.1	RP11-92J19.3	RP11-92J19.3-001	NA	NA	NA	inter
LNCA_21_P0002915	0.9067107	A	1.5923699	A	0.621721683037146	0	lncRNA	TCONS_00005907	NA	NA	NA	NA	XLOC_003358	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003358), lincRNA [TCONS_00005907]"	chr3:186175917-186175404	hs|3q27.3	Agilent_HUMAN_G3V2	TCONS_00005907	TCONS_00005907	chr3	186175404	186175917	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003363	0.89994955	A	0.90946436	A	0.9934265366352	0	lncRNA	ENST00000511634	NA	NA	NA	NA	XLOC_003539	NA	ENST00000511634	THC2660198	NA	"BROAD Institute lincRNA (XLOC_003539), lincRNA [TCONS_00007530]"	chr4:55222058-55222117	hs|4q12	Agilent_HUMAN_G3V2	ENST00000511634	ENST00000511634	chr4	 55222058	 55222117	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20635_PI429285431	0.926445	A	0.91349405	A	1.00901732781335	0	lncRNA	22274-1_{1..358}	lnc-RPRML-3:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPRML-3:11	chr17	 45098948	 45099305	-	lnc-RPRML-3	lnc-RPRML-3:11	ENSG00000262879.1	RP11-156P1.3	NA	NA	NA	inter
LNCA_21_P0005146	4.4427557	P	4.0730715	P	1.2920699708874	0	lncRNA	TCONS_00012632	NA	NA	NA	NA	XLOC_005560	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005560), lincRNA [TCONS_00012632]"	chr6:170454593-170454652	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012632	TCONS_00012632	chr6	170454593	170454652	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4471_PI429285431	0.8899954	A	0.8849664	A	1.00349191976702	0	lncRNA	4420-1_{1..637}	"transcript_id ""ENST00000542804.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000542804.1"" | genecode_v17"	chr12	126652781	126653417	+	ENSG00000256763.1	ENST00000542804.1	RP1-116K23.1	RP1-116K23.1-001	NA	NA	NA	inter
CUST_10638_PI429285431	2.429481	A	2.963883	A	0.690444808156704	0	lncRNA	12171-1_{1..364}	lnc-INO80D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INO80D-1:1	chr2	206854149	206854512	-	lnc-INO80D-1	lnc-INO80D-1:1	XLOC_002471	linc-RAPH1-2	INO80D	NA	chr2:206858445-206864321	inter
LNCA_21_P0008668	0.8933783	A	3.6003206	P	0.153154291709055	0	lncRNA	TCONS_00023493	NA	NA	NA	NA	XLOC_011344	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011344), lincRNA [TCONS_00023493]"	chr15:89618606-89622714	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00023493	TCONS_00023493	chr15	 89618606	 89622714	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12706_PI429285431	0.8982087	A	0.8876897	A	1.00731786082211	0	lncRNA	14323-1_{1..259}	lnc-GTF2B-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GTF2B-4:1	chr1	 88821114	 88821372	-	lnc-GTF2B-4	lnc-GTF2B-4:1	XLOC_000903	linc-SEP15-1	NA	NA	NA	inter
LNCA_21_P0001629	0.88792366	A	0.8764052	A	1.00801594509772	0	lncRNA	TCONS_00001833	NA	NA	NA	NA	XLOC_001219	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001219), lincRNA [TCONS_00001833]"	chr1:223266656-223266597	hs|1q41	Agilent_HUMAN_G3V2	TCONS_00001833	TCONS_00001833	chr1	223266597	223266656	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34326_PI429285431	0.91637594	A	0.9157366	A	1.00044325492686	0	lncRNA	35820-1_{1..3000}	n341190|BX538274|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3656|NULL|-1.1217800|-0.4610055	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341190|BX538274|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3656|NULL|-1.1217800|-0.4610055	chr7	 15707571	 15710570	+	NA	NA	NA	NA	MEOX2	NA	chr7:15697571-15726308	inner
CUST_51320_PI429285431	1.0879599	A	0.9022037	A	1.13741300102374	0	lncRNA	54924-1_{1..530}	hg19_lincRNAsTranscripts_TCONS_l2_00008614 range=chr15:42966403-42967267 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008614 range=chr15:42966403-42967267 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 42966403	 42966932	+	NA	NA	NA	NA	STARD9	NA	chr15:42956403-42977267	inner
LNCA_21_P0004993	0.88815534	A	0.8804139	A	1.00538037984376	0	lncRNA	THC2497134	NA	NA	NA	NA	XLOC_005587	NA	NA	THC2497134	NA	"BROAD Institute lincRNA (XLOC_005587), lincRNA [TCONS_00012055]"	chr6:004016786-004016727	hs|6p25.2	Agilent_HUMAN_G3V2	THC2497134	THC2497134	chr6	  4016727	  4016786	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37131_PI429285431	0.91141474	A	0.9151298	A	0.997428229318468	0	lncRNA	38254-1_{1..1020}	n345572|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1121|NULL|-1.6426200|-0.1608307	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n345572|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1121|NULL|-1.6426200|-0.1608307	chr2	231750888	231751907	+	NA	NA	NA	NA	ITM2C	NA	chr2:231740888-231743963	inter
CUST_16720_PI429285431	2.0011356	A	2.2677126	A	0.831289561009947	0	lncRNA	18427-1_{1..294}	lnc-STK39-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STK39-3:1	chr2	169285454	169285747	-	lnc-STK39-3	lnc-STK39-3:1	XLOC_002384	linc-STK39-3	NA	NA	NA	inter
LNCA_21_P0008315	0.8788926	A	0.87790656	A	1.00068370446534	0	lncRNA	TCONS_00022459	NA	NA	NA	NA	XLOC_010790	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010790), lincRNA [TCONS_00022459]"	chr14:32023347-32023406	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022459	TCONS_00022459	chr14	 32023347	 32023406	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014543	1.4157693	A	2.1631856	A	0.595669377814688	0	lncRNA	ENST00000554859	XR_110253	XR_110253	NA	Hs.729776	LOC100507295	NA	ENST00000554859	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507295 (LOC100507295), miscRNA [XR_110253]"	chr14:102276594-102263216	hs|14q32.31	Agilent_HUMAN_G3V2	ENST00000554859	ENST00000554859	chr14	102263216	102276594	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003929	0.9288269	A	2.8930535	A	0.256276553682616	0	lncRNA	ENST00000503877	XR_110562	XR_110562	NA	Hs.369776	XLOC_004525	NA	ENST00000503877	THC2602515	NA	"PREDICTED: Homo sapiens hypothetical LOC100505811 (LOC100505811), miscRNA [XR_110562]"	chr5:117619699-117619758	hs|5q23.1	Agilent_HUMAN_G3V2	ENST00000503877	ENST00000503877	chr5	117619699	117619758	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11064_PI429285431	2.9389615	P	3.191911	P	0.839179011157996	0	lncRNA	12615-1_{1..443}	lnc-C10orf31-10:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf31-10:2	chr10	  9919711	  9920153	-	lnc-C10orf31-10	lnc-C10orf31-10:2	XLOC_008727	linc-KIN-2	NA	NA	NA	inter
LNCA_21_P0013878	6.1674123	P	6.258831	P	0.938599306812586	0	lncRNA	ENST00000430079	NA	NA	NA	NA	XLOC_l2_015892	NA	ENST00000430079	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015892), lincRNA [TCONS_l2_00030899]"	chrY:15864985-15866524	hs|Yq11.221	Agilent_HUMAN_G3V2	ENST00000430079	ENST00000430079	chrY	 15864985	 15866524	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6267_PI429285431	3.602548	P	3.9730349	P	0.773521394377378	0	lncRNA	6192-1_{1..3000}	"transcript_id ""ENST00000579781.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000579781.1"" | genecode_v17"	chr18	 74327169	 74330168	+	ENSG00000266256.1	ENST00000579781.1	LINC00683	LINC00683-001	NA	"hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
CUST_19030_PI429285431	7.298639	P	5.695783	P	3.0374401878913	0	lncRNA	20720-2_{3001..3122}	lnc-NKAIN3-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKAIN3-3:7	chr8	 64125241	 64125362	+	lnc-NKAIN3-3	lnc-NKAIN3-3:7	ENSG00000185728	YTHDF3	YTHDF3	NA	chr8:64112241-64125346	inner
LNCA_21_P0004911	0.906387	A	1.4169881	A	0.701929917293078	0	lncRNA	TCONS_00011894	NA	NA	NA	NA	XLOC_005397	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005397), lincRNA [TCONS_00011894]"	chr6:98417334-98446785	hs|6q16.1	Agilent_HUMAN_G3V2	TCONS_00011894	TCONS_00011894	chr6	 98417334	 98446785	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25115_PI429285431	0.91607	A	0.8977133	A	1.01280518802215	0	lncRNA	26653-1_{1..577}	lnc-FBN1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBN1-3:3	chr15	 48623760	 48624336	-	lnc-FBN1-3	lnc-FBN1-3:3	ENSG00000259488.1	RP11-154J22.1	DUT	"hg19_refFlat_DUT:range=chr15:48623713-486342755'pad=0,hg19_refFlat_DUT:range=chr15:48623713-486342755'pad=0 3'pad=0 strand=+ repeatMasking=none,-109.40chr15:48623621-48633989"	NA	inner
CUST_22041_PI429285431	1.8498497	A	1.2572218	A	1.50799108536431	0	lncRNA	23649-2_{3001..3289}	lnc-CCDC102B-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC102B-8:1	chr18	 65181270	 65181558	+	lnc-CCDC102B-8	lnc-CCDC102B-8:1	ENSG00000263424.1	CTD-2541J13.2	DSEL	"hg19_refFlat_DSEL:range=chr18:65178207-651818755'pad=0,hg19_refFlat_DSEL:range=chr18:65178207-651818755'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20chr18:65173819-65183967"	NA	inner
CUST_39054_PI429285431	0.91426414	A	0.90187144	A	1.00862696468035	0	lncRNA	40032-1_{1..3000}	n385495|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zqo.1||4.9267300|-0.2998993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385495|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zqo.1||4.9267300|-0.2998993	chr9	 27374227	 27377226	-	NA	NA	NA	NA	MOBKL2B	NA	chr9:27364227-27388942	inner
CUST_52012_PI429285431	3.6654348	P	3.5516877	P	1.08203495050353	0	lncRNA	55542-3_{6001..7411}	hg19_lincRNAsTranscripts_TCONS_l2_00017137 range=chr21:15216173-15226304 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017137 range=chr21:15216173-15226304 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 15222173	 15223583	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43202_PI429285431	0.8929306	A	0.8930179	A	0.999939490081936	0	lncRNA	48016-1_{1..418}	ENST00000602456 havana:sense_intronic chromosome:GRCh37:18:61152834:61153251:1 gene:ENSG00000269989 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602456 havana:sense_intronic chromosome:GRCh37:18:61152834:61153251:1 gene:ENSG00000269989 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr18	 61152834	 61153251	+	ENSG00000269989	ENST00000602456	NA	NA	SERPINB5	NA	chr18:61142834-61163251	inner
CUST_7763_PI429285431	0.90806955	A	0.9113593	A	0.997722316928333	0	lncRNA	9390-1_{1..1972}	lnc-C1orf124-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-C1orf124-1:1	chr1	231466236	231468207	+	lnc-C1orf124-1	lnc-C1orf124-1:1	ENSG00000249800	XLOC_000610	EXOC8	NA	chr1:231468482-231473578	inter
CUST_12917_PI429285431	4.587738	P	5.3430915	P	0.592401213080882	0	lncRNA	14545-1_{1..213}	lnc-HSPA1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HSPA1B-1:1	chr6	 31794980	 31795192	+	lnc-HSPA1B-1	lnc-HSPA1B-1:1	XLOC_005252	linc-HSPA1B	HSPA1A	NA	chr6:31784980-31785719	inter
CUST_22474_PI429285431	0.904789	A	0.90442395	A	1.00025306539391	0	lncRNA	24061-1_{1..549}	lnc-LAMA2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LAMA2-3:1	chr6	128822149	128822697	+	lnc-LAMA2-3	lnc-LAMA2-3:1	ENSG00000224733.1	RP1-86D1.5	PTPRK	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70chr6:128812149-128832321"	NA	inner
LNCA_21_P0002551	0.8884735	A	0.8767192	A	1.00818074077937	0	lncRNA	TCONS_00004621	NA	NA	NA	NA	XLOC_002530	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002530), lincRNA [TCONS_00004621]"	chr2:238199713-238199654	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_00004621	TCONS_00004621	chr2	238199654	238199713	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26295_PI429285431	5.2237816	P	5.2385507	P	0.989815061346845	0	lncRNA	27802-1_{1..480}	lnc-SNPH-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNPH-1:1	chr20	  1343041	  1343520	+	lnc-SNPH-1	lnc-SNPH-1:1	ENSG00000229728.1	RP11-314N13.3	FKBP1A	NA	chr20:1349621-1353229	inter
LNCA_21_P0000933	5.417699	P	5.811873	P	0.760924911550647	0	lncRNA	ENST00000435253	NA	BC043293	NA	Hs.563856	XLOC_000948	NA	ENST00000435253	THC2624671	NA	"BROAD Institute lincRNA (XLOC_000948), lincRNA [TCONS_00000093]"	chr1:106145072-106145013	hs|1p21.1	Agilent_HUMAN_G3V2	ENST00000435253	ENST00000435253	chr1	106145013	106145072	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009602	0.88907343	A	0.8771882	A	1.00827224112464	0	lncRNA	TCONS_00026599	NA	NA	NA	NA	XLOC_012626	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012626), lincRNA [TCONS_00026599]"	chr18:11488581-11488878	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_00026599	TCONS_00026599	chr18	 11488581	 11488878	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004139	0.89551175	A	2.0196414	A	0.458778710451435	0	lncRNA	ENST00000479830	NA	NA	NA	NA	XLOC_004861	NA	ENST00000479830	NA	NA	"BROAD Institute lincRNA (XLOC_004861), lincRNA [TCONS_00009689]"	chr5:68339337-68339278	hs|5q13.1	Agilent_HUMAN_G3V2	ENST00000479830	ENST00000479830	chr5	 68339278	 68339337	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11657_PI429285431	1.8984381	A	2.4557035	A	0.679589091386721	0	lncRNA	13234-1_{1..641}	lnc-ACTRT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACTRT2-1:1	chr1	  2734066	  2734706	+	lnc-ACTRT2-1	lnc-ACTRT2-1:1	XLOC_000027	linc-ACTRT2-1	NA	NA	NA	inter
CUST_19010_PI429285431	11.294756	P	12.085421	P	0.578077569794582	0	lncRNA	20700-1_{1..762}	lnc-FAM149B1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM149B1-1:1	chr10	 75013651	 75014412	+	lnc-FAM149B1-1	lnc-FAM149B1-1:1	ENSG00000227540	RP11-152N13.5	TTC18	"hg19_refFlat_TTC18:range=chr10:75013733-751145545'pad=0,hg19_refFlat_TTC18:range=chr10:75013733-751145545'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70chr10:75013516-75024107"	NA	inner
LNCA_33_P3301752	7.0114613	P	7.643582	P	0.645227261406633	0	lncRNA	XR_108277	XR_108277	XR_108277	    79860	Hs.529098	FLJ21369	uncharacterized protein FLJ21369	NA	THC2480369	NA	"PREDICTED: Homo sapiens hypothetical protein FLJ21369 (FLJ21369), miscRNA [XR_108277]"	chr19:34767762-34767821	hs|19q13.11	Agilent_HUMAN_G3V2	XR_108277	XR_108277	chr19	 34767762	 34767821	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12796_PI429285431	0.9283849	A	0.92077726	A	1.00528714208158	0	lncRNA	14423-1_{1..969}	lnc-C5orf17-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf17-8:2	chr5	 27494226	 27495194	+	lnc-C5orf17-8	lnc-C5orf17-8:2	XLOC_004323	linc-CDH6-5	NA	NA	NA	inter
CUST_7329_PI429285431	0.91128457	A	1.2361776	A	0.798357579146433	0	lncRNA	8708-1_{1..316}	"transcript_id ""ENST00000363602.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000363602.1"" | genecode_v17"	chr18	 29298856	 29299171	+	ENSG00000200472.1	ENST00000363602.1	RN7SKP44	RN7SKP44-201	NA	NA	NA	inter
LNCA_21_P0014862	5.656559	P	5.050909	P	1.52166417802442	0	lncRNA	XR_132752	XR_132752	XR_132752	NA	NA	LOC100652987	uncharacterized LOC100652987	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652987 (LOC100652987), miscRNA [XR_132752]"	chr14:90871996-90871937	hs|14q32.11	Agilent_HUMAN_G3V2	XR_132752	XR_132752	chr14	 90871937	 90871996	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15441_PI429285431	0.92136914	A	0.94924295	A	0.980864794756451	0	lncRNA	17128-2_{3001..4075}	lnc-DCTD-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DCTD-6:1	chr4	182189098	182190172	-	lnc-DCTD-6	lnc-DCTD-6:1	XLOC_004192	linc-AGA-5	NA	NA	NA	inter
CUST_12961_PI429285431	2.3430946	A	2.9355092	A	0.663231944094743	0	lncRNA	14588-1_{1..2108}	lnc-C22orf26-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C22orf26-2:4	chr22	 46440489	 46442596	-	lnc-C22orf26-2	lnc-C22orf26-2:4	XLOC_014404	linc-WNT7B-2	C22orf26	NA	chr22:46446339-46450024	inter
LNCA_21_P0006242	9.675653	P	9.357911	P	1.24637828205701	0	lncRNA	TCONS_00016214	NA	NA	NA	NA	XLOC_007607	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007607), lincRNA [TCONS_00016214]"	chr9:138307104-138307163	hs|9q34.3	Agilent_HUMAN_G3V2	TCONS_00016214	TCONS_00016214	chr9	138307104	138307163	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20578_PI429285431	0.92573625	A	0.953102	A	0.981210277281359	0	lncRNA	22219-1_{1..748}	lnc-C17orf97-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf97-2:1	chr17	   206850	   207597	+	lnc-C17orf97-2	lnc-C17orf97-2:1	ENSG00000262294.1	RP11-1260E13.2	RPH3AL	NA	chr17:196850-202633	inter
CUST_42764_PI429285431	4.054648	P	4.498979	P	0.734925033738029	0	lncRNA	45734-1_{1..130}	ENST00000516241 ncrna:snoRNA chromosome:GRCh37:X:38167365:38167494:-1 gene:ENSG00000252050 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516241 ncrna:snoRNA chromosome:GRCh37:X:38167365:38167494:-1 gene:ENSG00000252050 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	 38167365	 38167494	-	ENSG00000252050	ENST00000516241	NA	NA	RPGR	NA	chrX:38157365-38177494	inner
CUST_31280_PI429285431	3.7884367	P	3.9334068	P	0.904398121108988	0	lncRNA	33068-2_{3001..3319}	n337740|AK096098|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|122|NULL|-0.8938230|-0.3616532	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337740|AK096098|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|122|NULL|-0.8938230|-0.3616532	chr1	 19539888	 19540206	+	NA	NA	NA	NA	UBR4	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10chr1:19526888-19536746"	NA	inter
CUST_38835_PI429285431	0.8936771	A	0.8939038	A	0.999842875879455	0	lncRNA	39827-1_{1..908}	n384642|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jpf.2||-1.1669500|-0.4171081	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384642|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jpf.2||-1.1669500|-0.4171081	chr5	 53173885	 53174792	+	NA	NA	NA	NA	ARL15	"hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60chr5:53180614-53184793"	NA	inter
LNCA_21_P0006197	1.7126156	A	1.6449958	A	1.04798625852668	0	lncRNA	TCONS_00016109	NA	NA	NA	NA	XLOC_007497	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007497), lincRNA [TCONS_00016109]"	chr9:106847887-106847946	hs|9q31.1	Agilent_HUMAN_G3V2	TCONS_00016109	TCONS_00016109	chr9	106847887	106847946	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12514_PI429285431	6.760515	P	7.098827	P	0.79096622681255	0	lncRNA	14125-1_{1..1066}	lnc-INSIG1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-INSIG1-2:1	chr7	155007758	155008823	+	lnc-INSIG1-2	lnc-INSIG1-2:1	XLOC_006303	linc-INSIG1-2	NA	NA	NA	inter
CUST_11952_PI429285431	4.508903	P	4.8457885	P	0.791748700792253	0	lncRNA	13532-1_{1..390}	lnc-CD276-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CD276-2:6	chr15	 74061094	 74061483	+	lnc-CD276-2	lnc-CD276-2:6	XLOC_011305	linc-TBC1D21	NA	NA	NA	inter
CUST_11951_PI429285431	0.8895896	A	1.2198817	A	0.795375429147049	0	lncRNA	13531-1_{1..656}	lnc-CLDN20-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLDN20-1:1	chr6	155846772	155847427	+	lnc-CLDN20-1	lnc-CLDN20-1:1	XLOC_005511	linc-ARID1B-5	NA	NA	NA	inter
LNCA_21_P0008573	0.8860799	A	0.8773883	A	1.00604274218312	0	lncRNA	TCONS_00023268	NA	NA	NA	NA	XLOC_011334	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011334), lincRNA [TCONS_00023268]"	chr15:83514333-83514392	hs|15q25.2	Agilent_HUMAN_G3V2	TCONS_00023268	TCONS_00023268	chr15	 83514333	 83514392	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25337_PI429285431	3.5462449	P	2.9546008	A	1.50696310934105	0	lncRNA	26868-1_{1..646}	lnc-CD40LG-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CD40LG-2:2	chrX	136103571	136104216	+	lnc-CD40LG-2	lnc-CD40LG-2:2	ENSG00000234062.3	RP11-308D16.4	GPR101	NA	chrX:136112307-136113777	inter
LNCA_21_P0012820	4.205526	P	4.5450897	P	0.790280272379081	0	lncRNA	THC2679516	NA	NA	NA	NA	XLOC_l2_011424	NA	NA	THC2679516	NA	"BROAD Institute lincRNA (XLOC_l2_011424), lincRNA [TCONS_l2_00022100]"	chr4:190742697-190742638	hs|4q35.2	Agilent_HUMAN_G3V2	THC2679516	THC2679516	chr4	190742638	190742697	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32420_PI429285431	4.490428	P	4.7000775	P	0.864747294490358	0	lncRNA	34096-1_{1..1935}	n339015|BC068274|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1444|NULL|-0.9748860|-0.1068641	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339015|BC068274|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1444|NULL|-0.9748860|-0.1068641	chr2	174890007	174891941	+	NA	NA	NA	NA	LOC100128905	NA	chr2:174890008-174891886	inter
CUST_38487_PI429285431	4.7230206	P	5.417548	P	0.617911701767273	0	lncRNA	39504-1_{1..977}	n382997|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ejp.1||-0.6600360|-0.2103922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382997|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ejp.1||-0.6600360|-0.2103922	chr16	 56669674	 56670650	+	NA	NA	NA	NA	MT1A	NA	chr16:56672578-56673999	inter
CUST_41306_PI429285431	9.707031	P	9.74793	P	0.972049036677316	0	lncRNA	42312-1_{1..77}	ENST00000401154 ncrna:miRNA chromosome:GRCh37:2:176032361:176032437:-1 gene:ENSG00000215973 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401154 ncrna:miRNA chromosome:GRCh37:2:176032361:176032437:-1 gene:ENSG00000215973 gene_biotype:miRNA transcript_biotype:miRNA	chr2	176032361	176032437	-	ENSG00000215973	ENST00000401154	NA	NA	ATF2	NA	chr2:176022361-176032897	inner
LNCA_21_P0003170	6.3763103	P	6.538091	P	0.893921034442395	0	lncRNA	THC2724707	NA	NA	NA	NA	XLOC_003240	NA	NA	THC2724707	NA	"BROAD Institute lincRNA (XLOC_003240), lincRNA [TCONS_00006650]"	chr3:127247292-127247233	hs|3q21.3	Agilent_HUMAN_G3V2	THC2724707	THC2724707	chr3	127247233	127247292	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7211_PI429285431	1.0582975	A	1.1640172	A	0.929341217631147	0	lncRNA	7640-1_{1..317}	"transcript_id ""ENST00000410789.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410789.1"" | genecode_v17"	chr4	168584137	168584453	+	ENSG00000222721.1	ENST00000410789.1	RN7SKP188	RN7SKP188-201	NA	NA	NA	inter
CUST_48942_PI429285431	5.521633	P	5.813732	P	0.816712945061816	0	lncRNA	52784-1_{1..916}	hg19_lincRNAsTranscripts_TCONS_l2_00019596 range=chr3:156505650-156534806 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019596 range=chr3:156505650-156534806 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	156505650	156506565	-	NA	NA	NA	NA	LEKR1	NA	chr3:156544096-156544806	inter
CUST_30713_PI429285431	3.470091	P	1.4759333	A	3.98383445877556	0	lncRNA	32495-1_{1..535}	n336253|Y00672|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325304|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325304|1.5915800|-0.2820939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336253|Y00672|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325304|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325304|1.5915800|-0.2820939	chr1	186337018	186337552	-	NA	NA	NA	NA	C1orf27	NA	chr1:186344890-186354272	inter
LNCA_21_P0012254	0.927873	A	1.8452717	A	0.529462825949936	0	lncRNA	TCONS_l2_00017630	NA	NA	NA	NA	XLOC_l2_009313	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009313), lincRNA [TCONS_l2_00017630]"	chr22:21527703-21527762	hs|22q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00017630	TCONS_l2_00017630	chr22	 21527703	 21527762	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40856_PI429285431	3.8095198	P	2.4899049	A	2.49599475054989	0	lncRNA	41557-1_{1..3000}	n410638|NR_037879|lncRNA|Homosapiens||RefGeneNoncode|NR_037879||0.6363220|-0.3615903	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410638|NR_037879|lncRNA|Homosapiens||RefGeneNoncode|NR_037879||0.6363220|-0.3615903	chr2	 37423634	 37426633	+	NA	NA	NA	NA	CEBPZ	"hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.40;hg19_refFlat_CEBPZ:range=chr2:37428907-374587105'pad=0,hg19_refFlat_CEBPZ:range=chr2:37428907-374587105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90chr2:37428772-37441886"	NA	inner
LNCA_21_P0003822	2.4868202	A	3.9234915	P	0.369418673727162	0	lncRNA	TCONS_00008717	NA	NA	NA	NA	XLOC_004231	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004231), lincRNA [TCONS_00008717]"	chr4:190598498-190598439	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008717	TCONS_00008717	chr4	190598439	190598498	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47486_PI429285431	1.519082	A	2.4048817	A	0.541187454095543	0	lncRNA	51506-2_{3001..5179}	"gi|402747156|ref|NR_073135.1| Homo sapiens Hermansky-Pudlak syndrome 4 (HPS4), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|402747156|ref|NR_073135.1| Homo sapiens Hermansky-Pudlak syndrome 4 (HPS4), transcript variant 5, non-coding RNA"	Chr22	 26849848	 26852026	-	89781	NR_073135.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008844	0.92682993	A	1.2222497	A	0.814835211505454	0	lncRNA	TCONS_00024080	NA	NA	NA	NA	XLOC_011436	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011436), lincRNA [TCONS_00024080]"	chr15:39602989-39602930	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00024080	TCONS_00024080	chr15	 39602930	 39602989	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51993_PI429285431	0.9117481	A	1.3108382	A	0.75833641115736	0	lncRNA	55529-1_{1..336}	hg19_lincRNAsTranscripts_TCONS_l2_00017190 range=chr21:29818612-29998954 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017190 range=chr21:29818612-29998954 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 29818612	 29818947	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002995	0.92204475	A	0.96603566	A	0.969968021807631	0	lncRNA	TCONS_00006124	NA	NA	NA	NA	XLOC_002726	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002726), lincRNA [TCONS_00006124]"	chr3:87203546-87205997	hs|3p11.2	Agilent_HUMAN_G3V2	TCONS_00006124	TCONS_00006124	chr3	 87203546	 87205997	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32288_PI429285431	0.93061507	A	0.9940621	A	0.956974886323803	0	lncRNA	33972-1_{1..2320}	n338865|BC041895|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1290|NULL|-0.0904997|-0.1983004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338865|BC041895|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1290|NULL|-0.0904997|-0.1983004	chr2	 65452778	 65455097	-	NA	NA	NA	NA	ACTR2	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60chr2:65454829-65465079"	NA	inner
CUST_25953_PI429285431	1.4684424	A	0.91108865	A	1.47156753117966	0	lncRNA	27473-1_{1..618}	lnc-CALCOCO2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CALCOCO2-4:1	chr17	 46781363	 46781980	+	lnc-CALCOCO2-4	lnc-CALCOCO2-4:1	ENSG00000262745.1	CTD-2377D24.8	NA	NA	NA	inter
CUST_45410_PI429285431	6.426881	P	4.6965814	P	3.31796714365357	0	lncRNA	49836-1_{1..2516}	"gi|310832400|ref|NR_037148.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily C , member 25 (DNAJC25), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|310832400|ref|NR_037148.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily C , member 25 (DNAJC25), transcript variant 2, non-coding RNA"	Chr9	114393632	114396147	+	548645	NR_037148.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002439	3.4819188	P	3.9153697	P	0.740488430539198	0	lncRNA	TCONS_00004246	NA	NA	NA	NA	XLOC_002087	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002087), lincRNA [TCONS_00004246]"	chr2:46909826-46909767	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00004246	TCONS_00004246	chr2	 46909767	 46909826	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008747	3.9103358	P	4.5271473	P	0.652110565684348	0	lncRNA	TCONS_00023697	NA	NA	NA	NA	XLOC_011502	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011502), lincRNA [TCONS_00023697]"	chr15:64168578-64168519	hs|15q22.31	Agilent_HUMAN_G3V2	TCONS_00023697	TCONS_00023697	chr15	 64168519	 64168578	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012392	0.88721496	A	1.6849581	A	0.57524835580245	0	lncRNA	TCONS_l2_00018853	NA	NA	NA	NA	XLOC_l2_009884	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009884), lincRNA [TCONS_l2_00018853]"	chr3:129832655-129832714	hs|3q22.1	Agilent_HUMAN_G3V2	TCONS_l2_00018853	TCONS_l2_00018853	chr3	129832655	129832714	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00806486	4.297387	P	4.6711454	P	0.771769320562629	0	lncRNA	TCONS_l2_00017153	NA	NA	NA	NA	XLOC_l2_009140	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009140), lincRNA [TCONS_l2_00017153]"	chr21:16742119-16742060	hs|21q21.1	Agilent_HUMAN_G3V2	TCONS_l2_00017153	TCONS_l2_00017153	chr21	 16742060	 16742119	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00319640	9.022638	P	9.137311	P	0.923591627479675	0	lncRNA	ENST00000441036	NA	NA	NA	NA	XLOC_001589	0	ENST00000441036	NA	NA	"BROAD Institute lincRNA (XLOC_001589), lincRNA [TCONS_00002951]"	chr2:100859286-100859345	hs|2q11.2	Agilent_HUMAN_G3V2	ENST00000441036	ENST00000441036	chr2	100859286	100859345	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39298_PI429285431	7.625486	P	7.5491877	P	1.05430939588519	0	lncRNA	40267-1_{1..2249}	n386306|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gse.1||6.5354000|-0.0833914	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386306|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gse.1||6.5354000|-0.0833914	chr22	 20383730	 20385978	-	NA	NA	NA	NA	TMEM191B	NA	chr22:20373730-20380440	inter
LNCA_21_P0012666	8.950661	P	9.444898	P	0.709937044157861	0	lncRNA	TCONS_l2_00021137	NA	NA	NA	NA	XLOC_l2_011120	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011120), lincRNA [TCONS_l2_00021137]"	chr4:53588591-53588532	hs|4q12	Agilent_HUMAN_G3V2	TCONS_l2_00021137	TCONS_l2_00021137	chr4	 53588532	 53588591	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21038_PI429285431	2.3815157	A	2.9220643	A	0.687509426649228	0	lncRNA	22665-1_{1..382}	lnc-MRPL9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MRPL9-1:1	chr1	151741820	151742201	-	lnc-MRPL9-1	lnc-MRPL9-1:1	ENSG00000249602.1	RP11-98D18.3	MRPL9	"hg19_refFlat_OAZ3:range=chr1:151739198-1517436955'pad=0,hg19_refFlat_OAZ3:range=chr1:151739198-1517436955'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_OAZ3:range=chr1:151735612-1517436955'pad=0,hg19_refFlat_OAZ3:range=chr1:151735612-1517436955'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10chr1:151732123-151736040"	NA	inner
CUST_30836_PI429285431	3.401072	P	4.0414934	P	0.641525536792553	0	lncRNA	32624-1_{1..649}	n336793|AB073658|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328459|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328459|-1.3545800|-0.4369195	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336793|AB073658|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328459|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328459|-1.3545800|-0.4369195	chr15	 52107459	 52108107	+	NA	NA	NA	NA	TMOD2	NA	chr15:52097459-52108560	inner
CUST_27183_PI429285431	3.6026368	P	3.7984138	P	0.873102537753433	0	lncRNA	28723-1_{1..311}	n324312|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043023|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043023|-1.0233100|-0.3020638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324312|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043023|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043023|-1.0233100|-0.3020638	chr6	165161228	165161538	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_18599_PI429285431	6.529338	P	6.946759	P	0.74876193539173	0	lncRNA	20306-1_{1..3000}	lnc-TATDN1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TATDN1-1:2	chr8	125486326	125489325	-	lnc-TATDN1-1	lnc-TATDN1-1:2	ENSG00000245149	RP11-383J24.5	RNF139	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90chr8:125487008-125496805"	NA	inter
LNCA_19_P00329086	9.638458	P	10.001848	P	0.777335872291741	0	lncRNA	TCONS_00012277	NA	NA	NA	NA	XLOC_005832	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005832), lincRNA [TCONS_00012277]"	chr6:132453216-132453157	hs|6q23.2	Agilent_HUMAN_G3V2	TCONS_00012277	TCONS_00012277	chr6	132453157	132453216	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004382	0.8898643	A	0.87799907	A	1.00825826360031	0	lncRNA	TCONS_00010318	NA	NA	NA	NA	XLOC_004801	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004801), lincRNA [TCONS_00010318]"	chr5:42318328-42318269	hs|5p13.1	Agilent_HUMAN_G3V2	TCONS_00010318	TCONS_00010318	chr5	 42318269	 42318328	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25902_PI429285431	8.32108	P	8.297025	P	1.01681343662823	0	lncRNA	27421-1_{1..418}	lnc-IL22RA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL22RA1-1:1	chr1	 24410436	 24410853	-	lnc-IL22RA1-1	lnc-IL22RA1-1:1	ENSG00000240284.1	RP11-293P20.3	MYOM3	NA	chr1:24400436-24420622	inner
LNCA_21_P0014301	2.6875775	A	3.081629	P	0.760989524831022	0	lncRNA	XR_109225	XR_109225	XR_109225	NA	NA	LOC644192	uncharacterized LOC644192	NA	THC2756015	NA	"PREDICTED: Homo sapiens hypothetical LOC644192 (LOC644192), miscRNA [XR_109225]"	chr15:96870284-96870225	hs|15q26.2	Agilent_HUMAN_G3V2	XR_109225	XR_109225	chr15	 96870225	 96870284	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22364_PI429285431	0.897232	A	1.3678892	A	0.721635791557385	0	lncRNA	23958-1_{1..734}	lnc-AC021066.1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC021066.1-3:3	chr12	 53007348	 53008081	+	lnc-AC021066.1-3	lnc-AC021066.1-3:3	ENSG00000257495.1	RP11-641A6.2	KRT73	"hg19_refFlat_KRT76:range=chr12:53162497-531710755'pad=0,hg19_refFlat_KRT76:range=chr12:53162497-531710755'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_KRT4:range=chr12:53200853-532078425'pad=0,hg19_refFlat_KRT4:range=chr12:53200853-532078425'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_KRT2:range=chr12:53038803-530459265'pad=0,hg19_refFlat_KRT2:range=chr12:53038803-530459265'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_KRT72:range=chr12:52979766-529952365'pad=0,hg19_refFlat_KRT72:range=chr12:52979766-529952365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_KRT74:range=chr12:52960753-529675615'pad=0,hg19_refFlat_KRT74:range=chr12:52960753-529675615'pad=0 3'pad=0 strand=- repeatMasking=none,-92.10;hg19_refFlat_KRT73:range=chr12:53001980-530123085'pad=0,hg19_refFlat_KRT73:range=chr12:53001980-530123085'pad=0 3'pad=0 strand=- repeatMasking=none,-97.90;hg19_refFlat_KRT79:range=chr12:53215656-532280445'pad=0,hg19_refFlat_KRT79:range=chr12:53215656-532280445'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_KRT71:range=chr12:52938316-529468615'pad=0,hg19_refFlat_KRT71:range=chr12:52938316-529468615'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90chr12:53001354-53012343"	NA	inner
CUST_34445_PI429285431	1.1902885	A	0.91817504	A	1.20757555690285	0	lncRNA	35922-2_{3001..4313}	n341320|AK126477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3789|NULL|0.5460210|-0.3756463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341320|AK126477|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3789|NULL|0.5460210|-0.3756463	chr7	131027723	131029035	+	NA	NA	NA	NA	MKLN1	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60chr7:131014723-131039036"	NA	inner
LNCA_21_P0003658	9.264556	P	9.284197	P	0.98647814901652	0	lncRNA	TCONS_00008273	NA	NA	NA	NA	XLOC_003714	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003714), lincRNA [TCONS_00008273]"	chr4:143778895-143778954	hs|4q31.21	Agilent_HUMAN_G3V2	TCONS_00008273	TCONS_00008273	chr4	143778895	143778954	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008774	0.88258225	A	0.87955415	A	1.00210112324982	0	lncRNA	TCONS_00023773	NA	NA	NA	NA	XLOC_011569	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011569), lincRNA [TCONS_00023773]"	chr15:89146657-89146598	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00023773	TCONS_00023773	chr15	 89146598	 89146657	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_395_PI429201921	0.9215785	A	1.1194229	A	0.871852266960342	0	lncRNA	248-1_{1..3000}	TC01005733.hg.1	 TCONS_l2_00001463-XLOC_l2_001066 // Broad TUCP // linc-IGSF3-1 chr1:-:117315571-117325219 // chr1 // 100 // 100 // 0 // --- // 0///TCONS_l2_00001462-XLOC_l2_001066 // Broad TUCP // linc-IGSF3-1 chr1:-:117315569-117319121 // chr1 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr1:-:117315569-117319121	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00001462-XLOC_l2_001066	linc-IGSF3-1	chr1	117315569	117319121	-	NA	NA	NA	NA	NFIA	NA	chr1:61704668-61729182	Unknown
CUST_27168_PI429285431	1.0133996	A	1.4933041	A	0.71702508631107	0	lncRNA	28707-1_{1..393}	n324296|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043206|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043206|-1.1859800|-0.3941452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324296|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043206|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043206|-1.1859800|-0.3941452	chr6	169209837	169210229	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007294	3.7620275	P	4.716147	P	0.516156512165379	0	lncRNA	TCONS_00019527	NA	NA	NA	NA	XLOC_009322	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009322), lincRNA [TCONS_00019527]"	chr11:126891372-126891431	hs|11q24.2	Agilent_HUMAN_G3V2	TCONS_00019527	TCONS_00019527	chr11	126891372	126891431	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44015_PI429285431	4.9590855	P	2.9087646	A	4.14198089757387	0	lncRNA	48703-1_{1..3000}	"gi|371118828|ref|NR_045770.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371118828|ref|NR_045770.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 9, non-coding RNA"	Chr2	175936978	175939977	-	1386	NR_045770.1	NA	NA	NA	NA	NA	inter
CUST_30878_PI429285431	0.9271349	A	1.2878205	A	0.778794391706568	0	lncRNA	32666-1_{1..224}	n336886|AY789462|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332364|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332364|0.6928030|-0.2282850	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336886|AY789462|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000332364|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000332364|0.6928030|-0.2282850	chr3	 38104261	 38104484	+	NA	NA	NA	NA	DLEC1	NA	chr3:38094261-38137760	inner
LNCA_21_P0005759	2.1549969	A	1.655426	A	1.41379299615122	0	lncRNA	TCONS_00014849	NA	NA	NA	NA	XLOC_006915	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006915), lincRNA [TCONS_00014849]"	chr8:125288019-125288357	hs|8q24.13	Agilent_HUMAN_G3V2	TCONS_00014849	TCONS_00014849	chr8	125288019	125288357	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009297	1.585014	A	1.6082563	A	0.98401874263821	0	lncRNA	TCONS_00025559	NA	NA	NA	NA	XLOC_012388	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012388), lincRNA [TCONS_00025559]"	chr17:10690619-10690560	hs|17p13.1	Agilent_HUMAN_G3V2	TCONS_00025559	TCONS_00025559	chr17	 10690560	 10690619	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20990_PI429285431	1.4626093	A	1.6179101	A	0.897945132997299	0	lncRNA	22619-1_{1..364}	lnc-RP11-178D12.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-178D12.1.1-1:1	chr15	 55973515	 55973878	+	lnc-RP11-178D12.1.1-1	lnc-RP11-178D12.1.1-1:1	ENSG00000259180.1	RP11-420M1.2	PRTG	"hg19_refFlat_PRTG:range=chr15:55912210-560351295'pad=0,hg19_refFlat_PRTG:range=chr15:55912210-560351295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90chr15:55963515-55983661"	NA	inner
CUST_13244_PI429285431	0.89219415	A	0.8884275	A	1.00261425404586	0	lncRNA	14874-1_{1..483}	lnc-ROPN1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ROPN1L-1:1	chr5	 10481986	 10482468	+	lnc-ROPN1L-1	lnc-ROPN1L-1:1	XLOC_004293	linc-ANKRD33B-2	NA	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-21.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-24.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-27.40"	NA	inter
CUST_16924_PI429285431	3.38834	P	3.6631882	P	0.826537281618527	0	lncRNA	18635-1_{1..364}	lnc-TMEM132B-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132B-4:5	chr12	126656137	126656500	+	lnc-TMEM132B-4	lnc-TMEM132B-4:5	XLOC_009937	linc-TMEM132C-12	NA	NA	NA	inter
CUST_30084_PI429285431	11.329059	P	11.337251	P	0.994337829154399	0	lncRNA	31856-1_{1..292}	n334610|U83111|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221810_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221810_03|-1.2663800|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334610|U83111|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221810_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221810_03|-1.2663800|-1.0000000	chr4	190906026	190906317	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_1173_PI429285431	1.854889	A	0.8842631	A	1.95969060455558	0	lncRNA	1162-1_{1..544}	"transcript_id ""ENST00000452002.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452002.1"" | genecode_v17"	chr2	177855236	177855779	-	ENSG00000236501.1	ENST00000452002.1	AC079305.11	AC079305.11-002	NA	NA	NA	inter
CUST_15673_PI429285431	0.91209006	A	0.8949295	A	1.01196581816783	0	lncRNA	17361-1_{1..1694}	lnc-HDAC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HDAC2-1:1	chr6	114194159	114195852	-	lnc-HDAC2-1	lnc-HDAC2-1:1	XLOC_005811	linc-LAMA4-3	MARCKS	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-32.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-29.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70chr6:114184159-114184652"	NA	inter
LNCA_21_P0009579	3.0976171	P	3.5064723	P	0.753220828574184	0	lncRNA	TCONS_00026737	NA	NA	NA	NA	XLOC_012881	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012881), lincRNA [TCONS_00026737]"	chr18:71351361-71351302	hs|18q22.3	Agilent_HUMAN_G3V2	TCONS_00026737	TCONS_00026737	chr18	 71351302	 71351361	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28066_PI429285431	0.91084623	A	0.91149545	A	0.999550096224506	0	lncRNA	29684-1_{1..640}	n325332|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325751|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325751|-1.1266500|-0.2657594	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325332|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000325751|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000325751|-1.1266500|-0.2657594	chr2	 42012242	 42012881	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014560	0.8898536	A	0.87781245	A	1.00838121654838	0	lncRNA	XR_110303	XR_110303	XR_110303	NA	NA	GOLGA6L7P	"golgin A6 family-like 7, pseudogene"	NA	NA	NA	"PREDICTED: Homo sapiens golgin A6 family-like 7, pseudogene (GOLGA6L7P), miscRNA [XR_110303]"	chr15:29090177-29090118	hs|15q13.1	Agilent_HUMAN_G3V2	XR_110303	XR_110303	chr15	 29090118	 29090177	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001023	0.89038986	A	0.8799407	A	1.00726909835006	0	lncRNA	AK023394	NA	AK023394	NA	Hs.600342	XLOC_000441	NA	ENST00000437833	THC2680205	NA	"BROAD Institute lincRNA (XLOC_000441), lincRNA [TCONS_00000324]"	chr1:161341695-161341754	hs|1q23.3	Agilent_HUMAN_G3V2	AK023394	AK023394	chr1	161341695	161341754	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002806	0.88916737	A	0.92277575	A	0.976973692772074	0	lncRNA	ENST00000456146	NA	NA	NA	NA	XLOC_002922	NA	ENST00000456146	NA	NA	"BROAD Institute lincRNA (XLOC_002922), lincRNA [TCONS_00005659]"	chr3:171612695-171612754	hs|3q26.31	Agilent_HUMAN_G3V2	ENST00000456146	ENST00000456146	chr3	171612695	171612754	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41931_PI429285431	4.1553044	P	4.1018763	P	1.03772782240563	0	lncRNA	43680-1_{1..87}	ENST00000580546 ncrna:miRNA chromosome:GRCh37:1:227832981:227833067:1 gene:ENSG00000265216 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580546 ncrna:miRNA chromosome:GRCh37:1:227832981:227833067:1 gene:ENSG00000265216 gene_biotype:miRNA transcript_biotype:miRNA	chr1	227832981	227833067	+	ENSG00000265216	ENST00000580546	NA	NA	ZNF678	NA	chr1:227822981-227843067	inner
LNCA_21_P0007783	0.88146204	A	1.6674211	A	0.579966284980888	0	lncRNA	TCONS_00020973	NA	NA	NA	NA	XLOC_010243	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010243), lincRNA [TCONS_00020973]"	chr12:127137354-127137295	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020973	TCONS_00020973	chr12	127137295	127137354	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33542_PI429285431	3.006578	A	3.0694444	A	0.957360109909647	0	lncRNA	35110-1_{1..515}	n340291|AF075048|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2752|NULL|-0.9300800|-0.1770674	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340291|AF075048|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2752|NULL|-0.9300800|-0.1770674	chr4	185377247	185377761	-	NA	NA	NA	NA	IRF2	NA	chr4:185367247-185387762	inner
CUST_42067_PI429285431	8.986396	P	9.175122	P	0.877380166993451	0	lncRNA	43979-1_{1..96}	ENST00000580332 ncrna:miRNA chromosome:GRCh37:7:64728309:64728404:1 gene:ENSG00000265175 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580332 ncrna:miRNA chromosome:GRCh37:7:64728309:64728404:1 gene:ENSG00000265175 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 64728309	 64728404	+	ENSG00000265175	ENST00000580332	NA	NA	NA	NA	NA	inter
LNCA_21_P0010327	0.9294732	A	1.7106477	A	0.581892880566408	0	lncRNA	THC2611989	NA	NA	NA	NA	XLOC_014111	NA	NA	THC2611989	NA	"BROAD Institute lincRNA (XLOC_014111), lincRNA [TCONS_00029313]"	chr21:045587739-045587680	hs|21q22.3	Agilent_HUMAN_G3V2	THC2611989	THC2611989	chr21	 45587680	 45587739	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19781_PI429285431	5.1791344	P	4.6888647	P	1.40470744972574	0	lncRNA	21439-1_{1..2155}	lnc-ARIH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-ARIH1-1:1	chr15	 72882032	 72884186	+	lnc-ARIH1-1	lnc-ARIH1-1:1	ENSG00000260534.1	RP11-1006G14.4	ARIH1	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70chr15:72872032-72878896"	NA	inter
CUST_30678_PI429285431	7.2791634	P	7.077956	P	1.14966010982734	0	lncRNA	32460-1_{1..275}	n336161|X92054|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324532|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324532|0.2695660|-0.2002237	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336161|X92054|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324532|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324532|0.2695660|-0.2002237	chr14	 22392658	 22392932	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006973	1.2814885	A	1.412642	A	0.913101092629147	0	lncRNA	TCONS_00018445	NA	NA	NA	NA	XLOC_008737	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008737), lincRNA [TCONS_00018445]"	chr10:15227059-15227000	hs|10p13	Agilent_HUMAN_G3V2	TCONS_00018445	TCONS_00018445	chr10	 15227000	 15227059	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9608_PI429285431	6.845082	P	7.6642723	P	0.566759942473327	0	lncRNA	11125-1_{1..420}	lnc-NACA2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NACA2-2:3	chr17	 59475373	 59475792	-	lnc-NACA2-2	lnc-NACA2-2:3	XLOC_012542	linc-APPBP2-2	BCAS3	NA	chr17:59465373-59470199	inter
CUST_42490_PI429285431	1.7180343	A	2.4216588	A	0.614027638289105	0	lncRNA	45256-1_{1..71}	ENST00000384713 ncrna:snoRNA chromosome:GRCh37:14:71865054:71865124:1 gene:ENSG00000207444 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384713 ncrna:snoRNA chromosome:GRCh37:14:71865054:71865124:1 gene:ENSG00000207444 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 71865054	 71865124	+	ENSG00000207444	ENST00000384713	NA	NA	NA	NA	NA	inter
CUST_680_PI429285431	0.939236	A	1.1678249	A	0.853469261926276	0	lncRNA	673-1_{1..1234}	"transcript_id ""ENST00000585834.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585834.1"" | genecode_v17"	chr2	  6757540	  6758773	-	ENSG00000236172.2	ENST00000585834.1	AC097517.2	AC097517.2-048	NA	NA	NA	inter
CUST_7510_PI429285431	4.0929527	P	4.179374	P	0.941856190158599	0	lncRNA	9150-2_{3001..3392}	lnc-ZNF101-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF101-1:1	chr19	 19858104	 19858495	+	lnc-ZNF101-1	lnc-ZNF101-1:1	ENSG00000249155	ENST00000507121	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00"	NA	inter
LNCA_21_P0005980	0.9068749	A	0.9184466	A	0.992011190287351	0	lncRNA	TCONS_00015540	NA	NA	NA	NA	XLOC_007248	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007248), lincRNA [TCONS_00015540]"	chr8:144163901-144163842	hs|8q24.3	Agilent_HUMAN_G3V2	TCONS_00015540	TCONS_00015540	chr8	144163842	144163901	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19828_PI429285431	1.6414156	A	2.834648	A	0.437321929723835	0	lncRNA	21485-1_{1..555}	lnc-ZNF26-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF26-2:1	chr12	133464706	133465260	+	lnc-ZNF26-2	lnc-ZNF26-2:1	ENSG00000236617.2	RP11-46H11.12	CHFR	NA	chr12:133454706-133464204	inter
CUST_12680_PI429285431	3.897531	P	3.906536	P	0.993777649145708	0	lncRNA	14297-1_{1..1077}	lnc-ERGIC2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ERGIC2-4:1	chr12	 29301115	 29302191	-	lnc-ERGIC2-4	lnc-ERGIC2-4:1	XLOC_010037	linc-PTHLH-3	NA	NA	NA	inter
CUST_28211_PI429285431	1.6749259	A	2.0562618	A	0.767726365740427	0	lncRNA	29841-1_{1..535}	n325495|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322426|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322426|-1.4673600|-0.0565630	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325495|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322426|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322426|-1.4673600|-0.0565630	chr2	   732487	   733021	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_29949_PI429285431	2.221603	A	2.1710923	A	1.03563146241795	0	lncRNA	31713-1_{1..391}	n334148|M86523|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196629|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196629|2.2044100|-0.0516536	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334148|M86523|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000196629|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000196629|2.2044100|-0.0516536	chr11	  1096363	  1096753	+	NA	NA	NA	NA	MUC2	NA	chr11:1086363-1104417	inner
CUST_44402_PI429285431	6.407535	P	6.7794023	P	0.772781627320651	0	lncRNA	49017-1_{1..1648}	"gi|374093216|ref|NR_046186.1| Homo sapiens PDZ and LIM domain 5 (PDLIM5), transcript variant 10, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374093216|ref|NR_046186.1| Homo sapiens PDZ and LIM domain 5 (PDLIM5), transcript variant 10, non-coding RNA"	Chr4	 95373008	 95374655	+	10611	NR_046186.1	NA	NA	NA	"hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00"	NA	inter
LNCA_21_P0014849	7.6080666	P	7.637138	P	0.98005091072749	0	lncRNA	XR_132721	XR_132721	XR_132721	NA	NA	LOC100652765	uncharacterized LOC100652765	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652765 (LOC100652765), miscRNA [XR_132721]"	chr5:172447296-172447237	hs|5q35.1	Agilent_HUMAN_G3V2	XR_132721	XR_132721	chr5	172447237	172447296	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33685_PI429285431	4.566538	P	4.7549233	P	0.877587389388599	0	lncRNA	35246-1_{1..325}	n340458|AJ459867|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2919|NULL|-1.1196600|-0.1475899	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340458|AJ459867|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2919|NULL|-1.1196600|-0.1475899	chr17	  3213279	  3213603	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42149_PI429285431	8.394585	P	8.692663	P	0.813335223584052	0	lncRNA	44177-1_{1..95}	ENST00000362220 ncrna:miRNA chromosome:GRCh37:11:75046136:75046230:-1 gene:ENSG00000199090 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362220 ncrna:miRNA chromosome:GRCh37:11:75046136:75046230:-1 gene:ENSG00000199090 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 75046136	 75046230	-	ENSG00000199090	ENST00000362220	NA	NA	ARRB1	NA	chr11:75036136-75056230	inner
LNCA_19_P00811264	7.278818	P	7.2959976	P	0.988162628235066	0	lncRNA	TCONS_00026369	NA	NA	NA	NA	XLOC_012720	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012720), lincRNA [TCONS_00026369]"	chr18:72882441-72882500	hs|18q22.3	Agilent_HUMAN_G3V2	TCONS_00026369	TCONS_00026369	chr18	 72882441	 72882500	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30977_PI429285431	0.88940704	A	1.0372084	A	0.90262499841487	0	lncRNA	32765-1_{1..852}	n337129|AB199240|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383640|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383640|-0.7907990|-0.2350680	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337129|AB199240|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383640|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383640|-0.7907990|-0.2350680	chr12	 11338659	 11339510	+	NA	NA	NA	NA	TAS2R42	"hg19_refFlat_TAS2R42:range=chr12:11338599-113395435'pad=0,hg19_refFlat_TAS2R42:range=chr12:11338599-113395435'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40chr12:11338599-11339543"	NA	inner
LNCA_21_P0010711	2.257152	A	0.8791532	A	2.59907596305937	0	lncRNA	ENST00000415910	NA	NA	NA	NA	XLOC_l2_000339	NA	ENST00000415910	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000339), lincRNA [TCONS_l2_00002120]"	chr1:107380752-107380811	hs|1p13.3	Agilent_HUMAN_G3V2	ENST00000415910	ENST00000415910	chr1	107380752	107380811	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00318297	3.9451337	P	3.5852563	P	1.28331683686396	0	lncRNA	XR_132539	XR_132539	XR_132539	NA	Hs.72451	LOC100652843	NA	NA	THC2602443	NA	"PREDICTED: Homo sapiens hypothetical LOC100652843 (LOC100652843), miscRNA [XR_132539]"	chr7:77287293-77287234	hs|7q11.23	Agilent_HUMAN_G3V2	XR_132539	XR_132539	chr7	 77287234	 77287293	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009992	4.740442	P	2.3107693	A	5.38771187438431	0	lncRNA	TCONS_00028266	NA	NA	NA	NA	XLOC_013612	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013612), lincRNA [TCONS_00028266]"	chr20:62034291-62034350	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028266	TCONS_00028266	chr20	 62034291	 62034350	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001196	1.9566236	A	0.8768883	A	2.11364824169537	0	lncRNA	ENST00000421851	NA	NA	NA	NA	XLOC_001095	NA	ENST00000421851	NA	NA	"BROAD Institute lincRNA (XLOC_001095), lincRNA [TCONS_00000685]"	chr1:173978464-173978405	hs|1q25.1	Agilent_HUMAN_G3V2	ENST00000421851	ENST00000421851	chr1	173978405	173978464	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48259_PI429285431	3.526964	P	3.6578383	P	0.913277819163906	0	lncRNA	52122-1_{1..797}	hg19_lincRNAsTranscripts_TCONS_l2_00000982 range=chr1:1870244-1877855 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000982 range=chr1:1870244-1877855 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	  1870244	  1871040	-	NA	NA	NA	NA	KIAA1751	NA	chr1:1884752-1887855	inter
LNCA_21_P0005385	3.1522727	P	5.034885	P	0.271192220762198	0	lncRNA	TCONS_00013465	NA	NA	NA	NA	XLOC_006117	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006117), lincRNA [TCONS_00013465]"	chr7:63152905-63152964	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_00013465	TCONS_00013465	chr7	 63152905	 63152964	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012847	1.4606422	A	5.1964626	P	0.0750595577430492	0	lncRNA	TCONS_l2_00022497	NA	NA	NA	NA	XLOC_l2_011737	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011737), lincRNA [TCONS_l2_00022497]"	chr5:121492895-121495822	hs|5q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00022497	TCONS_l2_00022497	chr5	121492895	121495822	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8419_PI429285431	1.0665746	A	0.8839999	A	1.13490748721152	0	lncRNA	9992-1_{1..3000}	lnc-TMEM132D-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132D-1:6	chr12	130526772	130529771	-	lnc-TMEM132D-1	lnc-TMEM132D-1:6	ENSG00000214039	XLOC_010260	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70"	NA	inter
CUST_7248_PI429285431	3.3777738	P	3.667478	P	0.81806977261108	0	lncRNA	7943-1_{1..290}	"transcript_id ""ENST00000492765.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000492765.2"" | genecode_v17"	chr8	 25038946	 25039235	-	ENSG00000241811.2	ENST00000492765.2	RN7SL651P	RN7SL651P-201	DOCK5	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20chr8:25028946-25049235"	NA	inter
LNCA_21_P0014570	0.92717254	A	2.19357	A	0.415696509737704	0	lncRNA	ENST00000547027	XR_110334	XR_110334	NA	Hs.485903	LOC100505814	NA	ENST00000547027	THC2545880	NA	"PREDICTED: Homo sapiens hypothetical LOC100505814 (LOC100505814), miscRNA [XR_110334]"	chr12:102040577-102040518	hs|12q23.2	Agilent_HUMAN_G3V2	ENST00000547027	ENST00000547027	chr12	102040518	102040577	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008439	0.92267317	A	0.9683991	A	0.968802215924507	0	lncRNA	TCONS_00022748	NA	NA	NA	NA	XLOC_011026	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011026), lincRNA [TCONS_00022748]"	chr14:53419061-53418583	hs|14q22.1	Agilent_HUMAN_G3V2	TCONS_00022748	TCONS_00022748	chr14	 53418583	 53419061	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014677	4.1002164	P	2.8694596	A	2.3469006981981	0	lncRNA	ENST00000261263	XR_111303	XR_111303	NA	Hs.232520	RAB21	"RAB21, member RAS oncogene family"	ENST00000261263	THC2652997	GO:0005515|GO:0005794|GO:0005783|GO:0007264|GO:0003924|GO:0031410|GO:0005525|GO:0015031|GO:0032154|GO:0006184|GO:0000139|GO:0000166|GO:0016020|GO:0031901|GO:0005789|GO:0019003|GO:0030659|GO:0005768	"PREDICTED: Homo sapiens hypothetical LOC100507345 (LOC100507345), miscRNA [XR_111303]"	chr12:72184234-72184293	hs|12q21.1	Agilent_HUMAN_G3V2	ENST00000261263	ENST00000261263	chr12	 72184234	 72184293	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31746_PI429285431	5.1692605	P	5.3406105	P	0.888011336814072	0	lncRNA	33487-2_{3001..3755}	n338283|AK125037|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|676|NULL|2.4824300|-0.1332547	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338283|AK125037|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|676|NULL|2.4824300|-0.1332547	chr19	  7600615	  7601369	-	NA	NA	NA	NA	PNPLA6	"hg19_refFlat_PNPLA6:range=chr19:7600437-76264485'pad=0,hg19_refFlat_PNPLA6:range=chr19:7600437-76264485'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.60;hg19_refFlat_PNPLA7:range=chr9:140354845-1404446495'pad=0,hg19_refFlat_PNPLA7:range=chr9:140354845-1404446495'pad=0 3'pad=0 strand=- repeatMasking=none,-60.70;hg19_refFlat_MCOLN1:range=chr19:7587637-75986815'pad=0,hg19_refFlat_MCOLN1:range=chr19:7587637-75986815'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.20;hg19_refFlat_PNPLA6:range=chr19:7600675-76264485'pad=0,hg19_refFlat_PNPLA6:range=chr19:7600675-76264485'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.30chr19:7599038-7611370"	NA	inner
LNCA_21_P0009169	9.0341425	P	9.173283	P	0.908059980015533	0	lncRNA	ENST00000492522	XR_109398	XR_109398	NA	Hs.599877	XLOC_012227	NA	ENST00000492522	THC2656978	NA	"PREDICTED: Homo sapiens hypothetical LOC100506373 (LOC100506373), miscRNA [XR_109398]"	chr17:46783472-46783531	hs|17q21.32	Agilent_HUMAN_G3V2	ENST00000492522	ENST00000492522	chr17	 46783472	 46783531	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27198_PI429285431	0.89877963	A	0.8969869	A	1.00124339812427	0	lncRNA	28740-1_{1..331}	n324330|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042889|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042889|-1.0275500|-0.2009549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324330|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042889|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042889|-1.0275500|-0.2009549	chr6	159405747	159406077	-	NA	NA	NA	NA	RSPH3	NA	chr6:159398266-159416293	inner
CUST_15618_PI429285431	0.9136105	A	1.0605712	A	0.903151112270962	0	lncRNA	17306-1_{1..797}	lnc-RP11-552I14.1.1-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-552I14.1.1-1:6	chr12	103557340	103558136	+	lnc-RP11-552I14.1.1-1	lnc-RP11-552I14.1.1-1:6	XLOC_009858	linc-STAB2-2	NA	NA	NA	inter
CUST_51682_PI429285431	4.663324	P	5.0083294	P	0.787305029685076	0	lncRNA	55244-1_{1..1845}	hg19_lincRNAsTranscripts_TCONS_l2_00010998 range=chr17:76480956-76487012 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010998 range=chr17:76480956-76487012 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 76480956	 76482800	+	NA	NA	NA	NA	DNAH17	"hg19_refFlat_DNAH17:range=chr17:76419987-765711395'pad=0,hg19_refFlat_DNAH17:range=chr17:76419987-765711395'pad=0 3'pad=0 strand=- repeatMasking=none,-97.80chr17:76470956-76497012"	NA	inner
LNCA_21_P0008393	0.886866	A	0.87715167	A	1.00675618116306	0	lncRNA	ENST00000555725	XR_110252	XR_110252	NA	NA	XLOC_010937	NA	ENST00000555725	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507277 (LOC100507277), miscRNA [XR_110252]"	chr14:101910590-101910649	hs|14q32.31	Agilent_HUMAN_G3V2	ENST00000555725	ENST00000555725	chr14	101910590	101910649	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013526	1.5577102	A	2.893725	A	0.396113341881919	0	lncRNA	TCONS_l2_00028327	NA	NA	NA	NA	XLOC_l2_014589	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014589), lincRNA [TCONS_l2_00028327]"	chr8:93730682-93728343	hs|8q22.1	Agilent_HUMAN_G3V2	TCONS_l2_00028327	TCONS_l2_00028327	chr8	 93728343	 93730682	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36613_PI429285431	1.0500593	A	0.8827367	A	1.12297250107369	0	lncRNA	37806-1_{1..1724}	n345109|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_658|NULL|-1.3280700|-0.2288786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345109|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_658|NULL|-1.3280700|-0.2288786	chr10	 27249651	 27251374	-	NA	NA	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50"	NA	inter
LNCA_21_P0004107	1.3794552	A	1.8567097	A	0.718343357046609	0	lncRNA	ENST00000511182	NA	NA	NA	NA	XLOC_004745	NA	ENST00000511182	THC2730465	NA	"BROAD Institute lincRNA (XLOC_004745), lincRNA [TCONS_00009611]"	chr5:17375670-17375611	hs|5p15.1	Agilent_HUMAN_G3V2	ENST00000511182	ENST00000511182	chr5	 17375611	 17375670	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32478_PI429285431	1.8657352	A	1.3252122	A	1.45449970113618	0	lncRNA	34147-1_{1..2835}	n339081|AK024910|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1511|NULL|-1.3109600|-0.4569686	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339081|AK024910|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1511|NULL|-1.3109600|-0.4569686	chr2	199613201	199616035	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010883	0.88419646	A	1.1632565	A	0.824127786878774	0	lncRNA	TCONS_l2_00003593	NA	NA	NA	NA	XLOC_l2_001995	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001995), lincRNA [TCONS_l2_00003593]"	chr10:61496710-61496651	hs|10q21.2	Agilent_HUMAN_G3V2	TCONS_l2_00003593	TCONS_l2_00003593	chr10	 61496651	 61496710	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014611	0.8818462	A	1.4175847	A	0.689805482336266	0	lncRNA	ENST00000532319	XR_110529	XR_110529	NA	NA	LOC100507145	NA	ENST00000532319	THC2520514	NA	"PREDICTED: Homo sapiens hypothetical LOC100507145 (LOC100507145), miscRNA [XR_110529]"	chr11:121936739-121936680	hs|11q24.1	Agilent_HUMAN_G3V2	ENST00000532319	ENST00000532319	chr11	121936680	121936739	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008240	1.9340175	A	2.0687432	A	0.910842995955984	0	lncRNA	TCONS_00022202	NA	NA	NA	NA	XLOC_010428	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010428), lincRNA [TCONS_00022202]"	chr13:75018858-75018917	hs|13q22.1	Agilent_HUMAN_G3V2	TCONS_00022202	TCONS_00022202	chr13	 75018858	 75018917	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14828_PI429285431	0.9186464	A	0.9243156	A	0.996078120739422	0	lncRNA	16491-1_{1..3000}	lnc-CCDC54-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC54-2:12	chr3	107004167	107007166	+	lnc-CCDC54-2	lnc-CCDC54-2:12	XLOC_002746	linc-CCDC54	NA	"hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.60"	NA	inter
LNCA_21_P0002848	0.9475394	A	0.9883097	A	0.972135755136674	0	lncRNA	ENST00000415774	NA	NA	NA	NA	XLOC_003096	NA	ENST00000415774	NA	NA	"BROAD Institute lincRNA (XLOC_003096), lincRNA [TCONS_00005766]"	chr3:41203840-41203781	hs|3p22.1	Agilent_HUMAN_G3V2	ENST00000415774	ENST00000415774	chr3	 41203781	 41203840	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34465_PI429285431	6.1542435	P	6.212254	P	0.960587872725891	0	lncRNA	35936-3_{6001..7481}	n341338|BX648938|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3807|NULL|-1.0035600|-0.3113025	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341338|BX648938|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3807|NULL|-1.0035600|-0.3113025	chr7	139645477	139646957	+	NA	NA	NA	NA	TBXAS1	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50chr7:139629477-139656962"	NA	inter
LNCA_21_P0002115	0.91858035	A	2.8661244	A	0.259257198072139	0	lncRNA	ENST00000441356	NA	BC014936	NA	Hs.32043	XLOC_002355	NA	ENST00000441356	THC2503174	NA	"BROAD Institute lincRNA (XLOC_002355), lincRNA [TCONS_00003420]"	chr2:151409457-151409398	hs|2q23.3	Agilent_HUMAN_G3V2	ENST00000441356	ENST00000441356	chr2	151409398	151409457	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32962_PI429285431	0.9107848	A	1.6326449	A	0.606315201847849	0	lncRNA	34579-1_{1..1847}	n339637|BX537734|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2081|NULL|-1.2320300|-0.4334426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339637|BX537734|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2081|NULL|-1.2320300|-0.4334426	chr3	146639749	146641595	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004779	2.4124804	A	2.7612855	A	0.785234192239107	0	lncRNA	ENST00000417932	NA	NA	NA	NA	XLOC_005851	NA	ENST00000417932	THC2663929	NA	"BROAD Institute lincRNA (XLOC_005851), lincRNA [TCONS_00011573]"	chr6:138264320-138264261	hs|6q23.3	Agilent_HUMAN_G3V2	ENST00000417932	ENST00000417932	chr6	138264261	138264320	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26604_PI429285431	0.91129756	A	0.906736	A	1.00316683631759	0	lncRNA	28107-1_{1..782}	lnc-BMP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BMP3-1:1	chr4	 82114214	 82114995	+	lnc-BMP3-1	lnc-BMP3-1:1	ENSG00000251059.1	RP11-100N20.1	PRKG2	NA	chr4:82104214-82124549	inner
LNCA_21_P0002429	2.507886	A	3.201768	P	0.618188190850128	0	lncRNA	TCONS_00004223	NA	NA	NA	NA	XLOC_002066	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002066), lincRNA [TCONS_00004223]"	chr2:43028694-43028635	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00004223	TCONS_00004223	chr2	 43028635	 43028694	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012909	1.1280184	A	2.314805	A	0.439280206591322	0	lncRNA	TCONS_l2_00022934	NA	NA	NA	NA	XLOC_l2_012071	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012071), lincRNA [TCONS_l2_00022934]"	chr5:67725640-67725581	hs|5q13.1	Agilent_HUMAN_G3V2	TCONS_l2_00022934	TCONS_l2_00022934	chr5	 67725581	 67725640	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23779_PI429285431	4.040965	P	4.0901847	P	0.966458909208558	0	lncRNA	25344-1_{1..1689}	lnc-SUPT6H-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SUPT6H-2:5	chr17	 26942702	 26944390	+	lnc-SUPT6H-2	lnc-SUPT6H-2:5	ENSG00000227543.3	SPAG5-AS1	KIAA0100	"hg19_refFlat_KIAA0100:range=chr17:26942082-269720745'pad=0,hg19_refFlat_KIAA0100:range=chr17:26942082-269720745'pad=0 3'pad=0 strand=- repeatMasking=none,-97.60chr17:26941458-26954390"	NA	inner
CUST_41144_PI429285431	3.136853	P	3.2818584	P	0.904375992480138	0	lncRNA	41942-1_{1..81}	ENST00000583596 ncrna:miRNA chromosome:GRCh37:10:103361174:103361254:1 gene:ENSG00000263436 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583596 ncrna:miRNA chromosome:GRCh37:10:103361174:103361254:1 gene:ENSG00000263436 gene_biotype:miRNA transcript_biotype:miRNA	chr10	103361174	103361254	+	ENSG00000263436	ENST00000583596	NA	NA	FBXW4	NA	chr10:103370421-103371254	inner
CUST_26316_PI429285431	1.018121	A	0.9357604	A	1.05874899492391	0	lncRNA	27823-1_{1..2383}	lnc-NTAN1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NTAN1-1:1	chr16	 15111963	 15114345	-	lnc-NTAN1-1	lnc-NTAN1-1:1	ENSG00000260872.1	RP11-680G24.5	PDXDC1	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PDXDC1:range=chr16:15069057-151301325'pad=0,hg19_refFlat_PDXDC1:range=chr16:15069057-151301325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40chr16:15101963-15124345"	NA	inner
CUST_40409_PI429285431	6.047619	P	6.256494	P	0.865211652214641	0	lncRNA	41194-1_{1..2270}	n409275|NR_033488_2|lncRNA|Homosapiens||RefGeneNoncode|NR_033488_2||1.1475700|-0.2557244	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409275|NR_033488_2|lncRNA|Homosapiens||RefGeneNoncode|NR_033488_2||1.1475700|-0.2557244	chr6	  2948368	  2950637	-	NA	NA	NA	NA	SERPINB6	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60chr6:2948393-2972399"	NA	inner
CUST_32498_PI429285431	0.9030911	A	0.8867571	A	1.01138620094043	0	lncRNA	34165-1_{1..751}	n339102|CR597362|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1532|NULL|-1.3086100|-0.4029088	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339102|CR597362|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1532|NULL|-1.3086100|-0.4029088	chr2	203852235	203852985	+	NA	NA	NA	NA	ALS2CR8	NA	chr2:203842235-203851060	inter
LNCA_21_P0013131	4.9295144	P	4.1056175	P	1.77018102135285	0	lncRNA	ENST00000450618	NA	NA	NA	NA	XLOC_l2_012518	NA	ENST00000450618	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012518), lincRNA [TCONS_l2_00025142]"	chr6:35513280-35513339	hs|6p21.31	Agilent_HUMAN_G3V2	ENST00000450618	ENST00000450618	chr6	 35513280	 35513339	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_776_PI429285431	2.3470492	A	1.7982731	A	1.46284417602841	0	lncRNA	768-1_{1..839}	"transcript_id ""ENST00000420404.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420404.1"" | genecode_v17"	chr2	 16405315	 16406153	+	ENSG00000228876.1	ENST00000420404.1	AC010745.2	AC010745.2-001	NA	NA	NA	inter
CUST_39007_PI429285431	0.8967574	A	0.88228667	A	1.01008081822873	0	lncRNA	39987-1_{1..894}	n385312|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wlv.1||-0.2358590|-0.2269689	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385312|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003wlv.1||-0.2358590|-0.2269689	chr7	155022390	155023283	-	NA	NA	NA	NA	NA	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-62.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0,hg19_refFlat_ACAD10:range=chr12:112130514-1121942775'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20"	NA	inter
LNCA_21_P0005252	4.3702946	P	5.7417197	P	0.386509264338441	0	lncRNA	ENST00000470135	NA	BC040593	NA	Hs.649292	XLOC_006200	NA	ENST00000470135	THC2699291	NA	"BROAD Institute lincRNA (XLOC_006200), lincRNA [TCONS_00013055]"	chr7:106421286-106421345	hs|7q22.3	Agilent_HUMAN_G3V2	ENST00000470135	ENST00000470135	chr7	106421286	106421345	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19290_PI429285431	4.668195	P	4.5294085	P	1.100978655598	0	lncRNA	20957-1_{1..383}	lnc-AKIP1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AKIP1-1:3	chr11	  8998972	  8999354	+	lnc-AKIP1-1	lnc-AKIP1-1:3	ENSG00000254860.1	TMEM9B-AS1	NRIP3	NA	chr11:9002123-9009074	inter
CUST_18735_PI429285431	4.8154516	P	5.472775	P	0.634053551878888	0	lncRNA	20432-1_{1..703}	lnc-CENPP-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CENPP-3:3	chr9	 94910204	 94910906	+	lnc-CENPP-3	lnc-CENPP-3:3	ENSG00000225511	C9orf44	NA	NA	NA	inter
CUST_36971_PI429285431	2.0718613	A	2.5457282	A	0.72003208483384	0	lncRNA	38118-1_{1..581}	n345434|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_983|NULL|-1.3205300|-0.3599394	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345434|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_983|NULL|-1.3205300|-0.3599394	chr1	 33430675	 33431255	+	NA	NA	NA	NA	RNF19B	NA	chr1:33420675-33430286	inter
CUST_25602_PI429285431	1.9334564	A	2.962212	A	0.490132731657575	0	lncRNA	27131-1_{1..575}	lnc-ERAL1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ERAL1-3:1	chr17	 27226303	 27226877	+	lnc-ERAL1-3	lnc-ERAL1-3:1	ENSG00000266642.1	RP11-20B24.4	PHF12	"hg19_refFlat_DHRS13:range=chr17:27225459-272299625'pad=0,hg19_refFlat_DHRS13:range=chr17:27225459-272299625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90chr17:27232271-27236412"	NA	inner
CUST_667_PI429285431	8.526456	P	8.431763	P	1.06783815198476	0	lncRNA	660-1_{1..381}	"transcript_id ""ENST00000431730.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431730.1"" | genecode_v17"	chr2	  4020435	  4020815	-	ENSG00000237401.2	ENST00000431730.1	AC107070.1	AC107070.1-004	NA	NA	NA	inter
CUST_27154_PI429285431	3.235267	P	3.022761	A	1.15869912834646	0	lncRNA	28690-1_{1..439}	n324278|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043284|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043284|-1.3907200|-0.3713154	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324278|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043284|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043284|-1.3907200|-0.3713154	chr6	170887185	170887623	-	NA	NA	NA	NA	PDCD2	NA	chr6:170884660-170893780	inner
CUST_37268_PI429285431	3.3794649	P	3.6223638	P	0.845045600750266	0	lncRNA	38376-1_{1..1171}	n345707|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1256|NULL|-1.2994600|-0.2284381	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345707|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1256|NULL|-1.2994600|-0.2284381	chr12	  9554404	  9555574	-	NA	NA	NA	NA	LOC728715	NA	chr12:9549658-9555094	inter
CUST_49534_PI429285431	0.9194215	A	1.8025885	A	0.542175940898946	0	lncRNA	53326-1_{1..578}	hg19_lincRNAsTranscripts_TCONS_l2_00024244 range=chr6:49779204-49788214 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024244 range=chr6:49779204-49788214 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 49779204	 49779781	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41909_PI429285431	0.9129747	A	1.6509081	A	0.599597635843428	0	lncRNA	43642-1_{1..101}	ENST00000384822 ncrna:miRNA chromosome:GRCh37:19:54211989:54212089:1 gene:ENSG00000207553 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384822 ncrna:miRNA chromosome:GRCh37:19:54211989:54212089:1 gene:ENSG00000207553 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54211989	 54212089	+	ENSG00000207553	ENST00000384822	NA	NA	NA	NA	NA	inter
CUST_26899_PI429285431	1.0531074	A	1.5355095	A	0.715784843194979	0	lncRNA	28417-1_{1..266}	n323975|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054028|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054028|-1.3294200|-0.2175343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323975|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054028|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054028|-1.3294200|-0.2175343	chr9	126317037	126317302	+	NA	NA	NA	NA	DENND1A	NA	chr9:126307037-126328156	inner
LNCA_21_P0010286	3.2372844	P	3.8460522	P	0.655756541827073	0	lncRNA	TCONS_00029147	NA	NA	NA	NA	XLOC_014088	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014088), lincRNA [TCONS_00029147]"	chr21:43209077-43209018	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029147	TCONS_00029147	chr21	 43209018	 43209077	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001119	3.8728104	P	3.9135466	P	0.972158733118912	0	lncRNA	ENST00000453837	NA	AK128482	NA	Hs.640073	XLOC_000772	NA	ENST00000453837	THC2515625	NA	"BROAD Institute lincRNA (XLOC_000772), lincRNA [TCONS_00000499]"	chr1:32308038-32307979	hs|1p35.2	Agilent_HUMAN_G3V2	ENST00000453837	ENST00000453837	chr1	 32307979	 32308038	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003274	3.9876347	P	3.886764	P	1.07242049797061	0	lncRNA	THC2491611	NA	NA	NA	NA	XLOC_002995	NA	NA	THC2491611	NA	"BROAD Institute lincRNA (XLOC_002995), lincRNA [TCONS_00007072]"	chr3:197378031-197377972	hs|3q29	Agilent_HUMAN_G3V2	THC2491611	THC2491611	chr3	197377972	197378031	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12564_PI429285431	1.0281681	A	1.6073952	A	0.669322259686265	0	lncRNA	14173-2_{3001..3661}	lnc-RP11-150O12.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-150O12.1.1-1:1	chr8	 37192285	 37192945	-	lnc-RP11-150O12.1.1-1	lnc-RP11-150O12.1.1-1:1	XLOC_007052	linc-DUSP26-4	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00"	NA	inter
CUST_38380_PI429285431	0.9233147	A	0.9306786	A	0.994908738109665	0	lncRNA	39419-1_{1..1005}	n382275|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ykl.1||-0.0035634|-0.2296444	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382275|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ykl.1||-0.0035634|-0.2296444	chr14	102262243	102263247	+	NA	NA	NA	NA	PPP2R5C	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.80chr14:102252243-102273248"	NA	inner
CUST_15560_PI429285431	0.9028243	A	1.6243203	A	0.606468239889943	0	lncRNA	17245-1_{1..636}	lnc-PAPD7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAPD7-2:1	chr5	  6775672	  6776307	+	lnc-PAPD7-2	lnc-PAPD7-2:1	XLOC_004273	linc-ADCY2-8	NA	NA	NA	inter
CUST_42130_PI429285431	0.91970754	A	1.2204326	A	0.81184428255538	0	lncRNA	44130-1_{1..124}	ENST00000385134 ncrna:miRNA chromosome:GRCh37:19:54177451:54177574:1 gene:ENSG00000207869 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385134 ncrna:miRNA chromosome:GRCh37:19:54177451:54177574:1 gene:ENSG00000207869 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 54177451	 54177574	+	ENSG00000207869	ENST00000385134	NA	NA	NA	NA	NA	inter
LNCA_21_P0008833	2.391659	A	1.4419677	A	1.93145933051909	0	lncRNA	TCONS_00023979	NA	NA	NA	NA	XLOC_011308	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011308), lincRNA [TCONS_00023979]"	chr15:74342405-74342464	hs|15q24.1	Agilent_HUMAN_G3V2	TCONS_00023979	TCONS_00023979	chr15	 74342405	 74342464	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35428_PI429285431	7.0704327	P	7.167548	P	0.934900477641124	0	lncRNA	36836-1_{1..3000}	n342491|CR749370|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4985|NULL|1.2876900|-0.4102766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342491|CR749370|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4985|NULL|1.2876900|-0.4102766	chr3	 28283074	 28286073	+	NA	NA	NA	NA	CMC1	NA	chr3:28283124-28361264	inner
LNCA_21_P0007734	1.8363032	A	2.2308753	A	0.760714969457683	0	lncRNA	TCONS_00020861	NA	NA	NA	NA	XLOC_010144	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010144), lincRNA [TCONS_00020861]"	chr12:88045719-88045660	hs|12q21.32	Agilent_HUMAN_G3V2	TCONS_00020861	TCONS_00020861	chr12	 88045660	 88045719	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17215_PI429285431	0.89530736	A	0.89048165	A	1.00335052779265	0	lncRNA	18929-1_{1..1315}	lnc-USPL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USPL1-1:1	chr13	 30992011	 30993325	+	lnc-USPL1-1	lnc-USPL1-1:1	XLOC_010336	linc-USPL1-1	NA	NA	NA	inter
CUST_36471_PI429285431	0.9119068	A	1.0797724	A	0.890158655663303	0	lncRNA	37679-1_{1..3000}	n344979|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_528|NULL|-1.4060700|-0.2391732	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344979|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_528|NULL|-1.4060700|-0.2391732	chr8	 61822244	 61825243	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_NASP:range=chr1:46049819-460838135'pad=0,hg19_refFlat_NASP:range=chr1:46049819-460838135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60"	NA	inter
LNCA_21_P0014805	0.88761306	A	0.97962236	A	0.938215148494158	0	lncRNA	XR_132624	XR_132624	XR_132624	NA	NA	LOC100288728	uncharacterized LOC100288728	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100288728 (LOC100288728), miscRNA [XR_132624]"	chr17:3038327-3038268	hs|17p13.3	Agilent_HUMAN_G3V2	XR_132624	XR_132624	chr17	  3038268	  3038327	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001653	6.9730296	P	7.3822083	P	0.753051950457824	0	lncRNA	THC2730649	NA	NA	NA	NA	XLOC_001288	NA	NA	THC2730649	NA	"BROAD Institute lincRNA (XLOC_001288), lincRNA [TCONS_00001899]"	chr1:244393229-244393170	hs|1q44	Agilent_HUMAN_G3V2	THC2730649	THC2730649	chr1	244393170	244393229	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37773_PI429285431	1.9871392	A	2.44294	A	0.729105353620711	0	lncRNA	38871-1_{1..766}	n346283|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1833|NULL|-1.5392000|-0.1895805	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346283|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1833|NULL|-1.5392000|-0.1895805	chr22	 20139510	 20140275	-	NA	NA	NA	NA	ZDHHC8	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20chr22:20129510-20135530"	NA	inter
CUST_15588_PI429285431	0.9103043	A	0.8908472	A	1.01357798888323	0	lncRNA	17275-1_{1..974}	lnc-GPATCH4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPATCH4-1:1	chr1	156586772	156587745	-	lnc-GPATCH4-1	lnc-GPATCH4-1:1	XLOC_001046	linc-GPATCH4	HAPLN2	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-60.00;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-19.90chr1:156589086-156595517"	NA	inter
CUST_31961_PI429285431	2.5234146	A	0.9202249	A	3.03814283882914	0	lncRNA	33684-1_{1..1456}	n338518|BC039436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|916|NULL|-0.6677090|-0.2671659	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n338518|BC039436|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|916|NULL|-0.6677090|-0.2671659	chr19	 35843325	 35844780	+	NA	NA	NA	NA	CD22	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50chr19:35833325-35838264"	NA	inner
CUST_44121_PI429285431	0.90295374	A	0.8888917	A	1.00979472071502	0	lncRNA	48787-1_{1..1088}	"gi|310119159|ref|XR_110033.1| PREDICTED: Homo sapiens uncharacterized LOC100293612 (LOC100293612), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119159|ref|XR_110033.1| PREDICTED: Homo sapiens uncharacterized LOC100293612 (LOC100293612), misc_RNA"	Chr3	 13689246	 13690333	-	100293612	XR_110033.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0007877	1.4544013	A	1.1524494	A	1.23281122238475	0	lncRNA	TCONS_00021310	NA	NA	NA	NA	XLOC_010073	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010073), lincRNA [TCONS_00021310]"	chr12:50323829-50323770	hs|12q13.12	Agilent_HUMAN_G3V2	TCONS_00021310	TCONS_00021310	chr12	 50323770	 50323829	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002790	3.4566593	P	4.0859413	P	0.646498084224929	0	lncRNA	ENST00000477099	NA	NA	NA	NA	XLOC_002898	NA	ENST00000477099	NA	NA	"BROAD Institute lincRNA (XLOC_002898), lincRNA [TCONS_00005639]"	chr3:163196892-163196951	hs|3q26.1	Agilent_HUMAN_G3V2	ENST00000477099	ENST00000477099	chr3	163196892	163196951	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29524_PI429285431	0.91806424	A	1.0364434	A	0.921222044620805	0	lncRNA	31282-1_{1..817}	n332982|AF114163|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000069830|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000069830|1.5483000|-0.2615920	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332982|AF114163|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000069830|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000069830|1.5483000|-0.2615920	chr13	 78492708	 78493524	-	NA	NA	NA	NA	EDNRB	NA	chr13:78482708-78493903	inner
CUST_32970_PI429285431	1.5590483	A	0.88372546	A	1.59695409214939	0	lncRNA	34587-1_{1..2106}	n339646|AK026659|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2090|NULL|-1.1970900|-0.3851256	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339646|AK026659|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2090|NULL|-1.1970900|-0.3851256	chr3	152557178	152559283	+	NA	NA	NA	NA	P2RY1	NA	chr3:152547178-152555845	inter
LNCA_19_P00809417	4.6298285	P	5.0819807	P	0.730951606929948	0	lncRNA	XR_109254	XR_109254	XR_109254	NA	Hs.720980	LOC100287628	uncharacterized LOC100287628	NA	THC2492624	NA	"PREDICTED: Homo sapiens hypothetical LOC100287628, transcript variant 1 (LOC100287628), miscRNA [XR_109254]"	chr16:10481362-10481421	hs|16p13.2	Agilent_HUMAN_G3V2	XR_109254	XR_109254	chr16	 10481362	 10481421	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009234	8.656596	P	8.777446	P	0.919645658650369	0	lncRNA	TCONS_00025345	NA	NA	NA	NA	XLOC_012165	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012165), lincRNA [TCONS_00025345]"	chr17:29912599-29912658	hs|17q11.2	Agilent_HUMAN_G3V2	TCONS_00025345	TCONS_00025345	chr17	 29912599	 29912658	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_947_PI429285431	0.9138446	A	1.6615088	A	0.595567032032348	0	lncRNA	937-1_{1..488}	"transcript_id ""ENST00000455845.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455845.1"" | genecode_v17"	chr2	 82210396	 82210883	-	ENSG00000231781.1	ENST00000455845.1	AC079896.1	AC079896.1-001	NA	"hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00"	NA	inter
CUST_7317_PI429285431	4.3426304	P	4.270895	P	1.05098013456571	0	lncRNA	8536-1_{1..310}	"transcript_id ""ENST00000410685.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410685.1"" | genecode_v17"	chr15	 97029812	 97030121	+	ENSG00000222617.1	ENST00000410685.1	RN7SKP254	RN7SKP254-201	NA	NA	NA	inter
CUST_19606_PI429285431	3.064677	A	4.7231874	P	0.316766044456335	0	lncRNA	21262-1_{1..707}	lnc-RBPMS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RBPMS2-1:1	chr15	 64995228	 64995934	-	lnc-RBPMS2-1	lnc-RBPMS2-1:1	ENSG00000259526.1	RP11-330L19.4	OAZ2	NA	chr15:64985228-64995462	inner
CUST_4400_PI429285431	3.9696026	P	4.4020796	P	0.740988470484656	0	lncRNA	4350-1_{1..557}	"transcript_id ""ENST00000547465.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547465.1"" | genecode_v17"	chr12	106100552	106101108	+	ENSG00000257859.1	ENST00000547465.1	RP11-266E14.1	RP11-266E14.1-002	NA	NA	NA	inter
CUST_21882_PI429285431	0.91667885	A	0.9245931	A	0.99452927912198	0	lncRNA	23491-1_{1..571}	lnc-GLUL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-GLUL-1:1	chr1	182283083	182283653	-	lnc-GLUL-1	lnc-GLUL-1:1	ENSG00000228918.1	GS1-122H1.2	NA	NA	NA	inter
LNCA_21_P0008354	1.9582148	A	2.312312	A	0.782359069374453	0	lncRNA	TCONS_00022548	NA	NA	NA	NA	XLOC_010866	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010866), lincRNA [TCONS_00022548]"	chr14:71148641-71148700	hs|14q24.2	Agilent_HUMAN_G3V2	TCONS_00022548	TCONS_00022548	chr14	 71148641	 71148700	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38_PI429201921	5.081688	P	5.4844046	P	0.756432576083418	0	lncRNA	39-1_{1..1276}	TC17002547.hg.1	TCONS_l2_00011136-XLOC_l2_006021 // Broad TUCP // linc-LGALS9B-3 chr17:-:20419277-20420554 // chr17 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr17:-:20419277-20420554	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00011136-XLOC_l2_006021	linc-LGALS9B-3	chr17	 20419277	 20420554	-	NA	NA	NA	NA	CCDC84	NA	chr11:118868852-118878714	Unknown
CUST_50396_PI429285431	5.0014186	P	5.027125	P	0.982339488879425	0	lncRNA	54100-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00030418 range=chrX:282383-285848 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00030418 range=chrX:282383-285848 5'pad=0 3'pad=0 strand=- repeatMasking=none	chrX	   282383	   285382	-	NA	NA	NA	NA	PPP2R3B	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.10;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.70chrX:294668-295848"	NA	inter
LNCA_21_P0002486	0.8992985	A	0.9076746	A	0.994210951394502	0	lncRNA	TCONS_00004370	NA	NA	NA	NA	XLOC_002253	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002253), lincRNA [TCONS_00004370]"	chr2:108266545-108263408	hs|2q12.3	Agilent_HUMAN_G3V2	TCONS_00004370	TCONS_00004370	chr2	108263408	108266545	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15089_PI429285431	0.91534346	A	0.9211719	A	0.995968182934104	0	lncRNA	16752-1_{1..400}	lnc-DNAH8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DNAH8-1:1	chr6	 38682842	 38683241	+	lnc-DNAH8-1	lnc-DNAH8-1:1	XLOC_005281	linc-DNAH8-1	DNAH8	NA	chr6:38683117-38692993	inter
CUST_24348_PI429285431	1.4953685	A	1.5683744	A	0.950655213452382	0	lncRNA	25900-1_{1..871}	lnc-MAGEA10-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAGEA10-1:2	chrX	151306947	151307817	-	lnc-MAGEA10-1	lnc-MAGEA10-1:2	ENSG00000266560.1	RP11-1007I13.4	MAGEA10-MAGEA5	NA	chrX:151296947-151307025	inner
LNCA_21_P0006939	0.8897003	A	0.9057175	A	0.988959125809896	0	lncRNA	TCONS_00018394	NA	NA	NA	NA	XLOC_008676	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008676), lincRNA [TCONS_00018394]"	chr10:134760972-134761031	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_00018394	TCONS_00018394	chr10	134760972	134761031	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37859_PI429285431	0.91039395	A	0.8953804	A	1.01046093683712	0	lncRNA	38952-1_{1..1176}	n346394|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1944|NULL|-1.6558300|-0.1576882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346394|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1944|NULL|-1.6558300|-0.1576882	chr12	  9572800	  9573975	+	NA	NA	NA	NA	NA	"hg19_refFlat_DDX11:range=chr12:31231328-312569675'pad=0,hg19_refFlat_DDX11:range=chr12:31231328-312569675'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20;hg19_refFlat_DDX11:range=chr12:31231328-312567705'pad=0,hg19_refFlat_DDX11:range=chr12:31231328-312567705'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_DDX11:range=chr12:31231406-312567705'pad=0,hg19_refFlat_DDX11:range=chr12:31231406-312567705'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.20"	NA	inter
LNCA_21_P0003805	0.88729906	A	1.480912	A	0.662681275134656	0	lncRNA	TCONS_00008671	NA	NA	NA	NA	XLOC_004190	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004190), lincRNA [TCONS_00008671]"	chr4:181826889-181826830	hs|4q34.3	Agilent_HUMAN_G3V2	TCONS_00008671	TCONS_00008671	chr4	181826830	181826889	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00318725	2.8353887	A	2.5612931	A	1.20923580303237	0	lncRNA	TCONS_00017158	NA	NA	NA	NA	XLOC_007966	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007966), lincRNA [TCONS_00017158]"	chrX:45461565-45461624	hs|Xp11.3	Agilent_HUMAN_G3V2	TCONS_00017158	TCONS_00017158	chrX	 45461565	 45461624	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42122_PI429285431	6.8385544	P	6.9294147	P	0.938962665167037	0	lncRNA	44101-1_{1..86}	ENST00000581261 ncrna:miRNA chromosome:GRCh37:17:54968631:54968716:-1 gene:ENSG00000265238 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581261 ncrna:miRNA chromosome:GRCh37:17:54968631:54968716:-1 gene:ENSG00000265238 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 54968631	 54968716	-	ENSG00000265238	ENST00000581261	NA	NA	TRIM25	NA	chr17:54965270-54978716	inner
CUST_8498_PI429285431	0.8986791	A	0.88539165	A	1.00925270252626	0	lncRNA	10061-1_{1..2793}	lnc-KIAA1267-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIAA1267-2:1	chr17	 44401536	 44404328	-	lnc-KIAA1267-2	lnc-KIAA1267-2:1	ENSG00000251651	ENST00000504306	ARL17B	"hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0,hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0,hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0,hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0,hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0,hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0,hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80chr17:44391536-44411871"	NA	inner
LNCA_21_P0004179	1.1061344	A	1.320188	A	0.86211151466171	0	lncRNA	ENST00000450613	NA	NA	NA	NA	XLOC_004984	NA	ENST00000450613	THC2742757	NA	"BROAD Institute lincRNA (XLOC_004984), lincRNA [TCONS_00009774]"	chr5:125433761-125433702	hs|5q23.2	Agilent_HUMAN_G3V2	ENST00000450613	ENST00000450613	chr5	125433702	125433761	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32636_PI429285431	6.6862125	P	4.715418	P	3.91983927285099	0	lncRNA	34294-1_{1..1920}	n339260|CR607695|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1692|NULL|-0.7203990|-0.3192387	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339260|CR607695|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1692|NULL|-0.7203990|-0.3192387	chr16	 68261128	 68263047	+	NA	NA	NA	NA	NFATC3	NA	chr16:68251128-68263162	inner
CUST_43504_PI429285431	0.917739	A	1.1060187	A	0.877651627926507	0	lncRNA	48294-2_{3001..3115}	"gi|218563728|ref|NR_024602.1| Homo sapiens chloride channel accessory 4 (CLCA4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|218563728|ref|NR_024602.1| Homo sapiens chloride channel accessory 4 (CLCA4), transcript variant 2, non-coding RNA"	Chr1	 87015759	 87015873	+	22802	NR_024602.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0008744	3.0380516	P	3.3223126	P	0.82116212971126	0	lncRNA	TCONS_00023687	NA	NA	NA	NA	XLOC_011486	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011486), lincRNA [TCONS_00023687]"	chr15:58576228-58576169	hs|15q21.3	Agilent_HUMAN_G3V2	TCONS_00023687	TCONS_00023687	chr15	 58576169	 58576228	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15646_PI429285431	1.3125402	A	1.1731789	A	1.10141739601015	0	lncRNA	17338-1_{1..402}	lnc-ITGA6-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ITGA6-1:2	chr2	173232499	173232900	+	lnc-ITGA6-1	lnc-ITGA6-1:2	XLOC_001757	linc-ITGA6-1	NA	NA	NA	inter
CUST_26106_PI429285431	6.1263695	P	6.0990396	P	1.01912421234819	0	lncRNA	27618-1_{1..531}	lnc-GDPD4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GDPD4-1:2	chr11	 76837033	 76837563	-	lnc-GDPD4-1	lnc-GDPD4-1:2	ENSG00000254808.1	RP11-689N19.3	CAPN5	NA	chr11:76827033-76837201	inner
LNCA_21_P0007691	0.88883233	A	0.88869673	A	1.00009399517495	0	lncRNA	TCONS_00020728	NA	NA	NA	NA	XLOC_010027	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010027), lincRNA [TCONS_00020728]"	chr12:20282640-20280881	hs|12p12.2	Agilent_HUMAN_G3V2	TCONS_00020728	TCONS_00020728	chr12	 20280881	 20282640	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41796_PI429285431	0.8991318	A	1.5209278	A	0.649861416451336	0	lncRNA	43379-1_{1..82}	ENST00000385018 ncrna:miRNA chromosome:GRCh37:22:22007593:22007674:1 gene:ENSG00000207751 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385018 ncrna:miRNA chromosome:GRCh37:22:22007593:22007674:1 gene:ENSG00000207751 gene_biotype:miRNA transcript_biotype:miRNA	chr22	 22007593	 22007674	+	ENSG00000207751	ENST00000385018	NA	NA	SDF2L1	NA	chr22:21997593-21998588	inter
LNCA_21_P0005971	6.3088655	P	6.417166	P	0.927680229156111	0	lncRNA	TCONS_00015486	NA	NA	NA	NA	XLOC_007161	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007161), lincRNA [TCONS_00015486]"	chr8:94910580-94910521	hs|8q22.1	Agilent_HUMAN_G3V2	TCONS_00015486	TCONS_00015486	chr8	 94910521	 94910580	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003842	0.8876191	A	0.87718433	A	1.00725905150743	0	lncRNA	ENST00000508099	NA	NA	NA	NA	XLOC_003629	NA	ENST00000508099	NA	NA	"BROAD Institute lincRNA (XLOC_003629), lincRNA [TCONS_00008861]"	chr4:104358925-104358984	hs|4q24	Agilent_HUMAN_G3V2	ENST00000508099	ENST00000508099	chr4	104358925	104358984	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12330_PI429285431	0.97439164	A	0.8820069	A	1.06613101552134	0	lncRNA	13942-1_{1..1128}	lnc-NOVA1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOVA1-2:1	chr14	 27291210	 27292337	-	lnc-NOVA1-2	lnc-NOVA1-2:1	XLOC_010980	linc-NOVA1-3	NA	NA	NA	inter
LNCA_21_P0014676	6.7225127	P	7.0659494	P	0.788161563509342	0	lncRNA	XR_111289	XR_111289	XR_111289	NA	NA	LOC100509541	uncharacterized LOC100509541	NA	THC2656173	NA	"PREDICTED: Homo sapiens hypothetical LOC100509541 (LOC100509541), miscRNA [XR_111289]"	chr12:52485953-52486012	hs|12q13.13	Agilent_HUMAN_G3V2	XR_111289	XR_111289	chr12	 52485953	 52486012	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006624	2.3496783	A	2.4274235	A	0.947537404099978	0	lncRNA	ENST00000428165	XR_109005	XR_109005	NA	Hs.258979	XLOC_008725	NA	ENST00000428165	THC2608006	NA	"PREDICTED: Homo sapiens hypothetical LOC100507143 (LOC100507143), miscRNA [XR_109005]"	chr10:8301358-8301299	hs|10p14	Agilent_HUMAN_G3V2	ENST00000428165	ENST00000428165	chr10	  8301299	  8301358	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014183	3.4810057	P	2.6211305	A	1.81488130795694	0	lncRNA	XR_108739	XR_108739	XR_108739	NA	NA	LOC100505921	uncharacterized LOC100505921	ENST00000451066	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505921 (LOC100505921), miscRNA [XR_108739]"	chr7:7989601-7989542	hs|7p21.3	Agilent_HUMAN_G3V2	XR_108739	XR_108739	chr7	  7989542	  7989601	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47648_PI429285431	6.825212	P	6.4831524	P	1.2675648860508	0	lncRNA	51633-1_{1..786}	"gi|218749851|ref|NR_024607.1| Homo sapiens uncharacterized protein MGC16121 (MGC16121), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|218749851|ref|NR_024607.1| Homo sapiens uncharacterized protein MGC16121 (MGC16121), non-coding RNA"	ChrX	133677407	133678192	-	84848	NR_024607.1	NA	NA	NA	NA	NA	inter
CUST_46370_PI429285431	0.92334974	A	0.9278119	A	0.996911844568512	0	lncRNA	50590-1_{1..3000}	"gi|258613852|ref|NR_028457.1| Homo sapiens ataxin 3 (ATXN3), transcript variant k, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|258613852|ref|NR_028457.1| Homo sapiens ataxin 3 (ATXN3), transcript variant k, non-coding RNA"	Chr14	 92524896	 92527895	-	4287	NR_028457.1	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20"	NA	inter
LNCA_33_P3377786	5.5166984	P	5.493773	P	1.01601760460491	0	lncRNA	XR_133064	XR_133064	XR_133064	100509553	NA	LOC100509553	ETS domain-containing protein Elk-1-like	NA	THC2484830	NA	"PREDICTED: Homo sapiens ETS domain-containing protein Elk-1-like (LOC100509553), miscRNA [XR_133064]"	chr14:106012962-106012903	hs|14q32.33	Agilent_HUMAN_G3V2	XR_133064	XR_133064	chr14	106012903	106012962	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26499_PI429285431	1.0608032	A	1.3114417	A	0.840524338306336	0	lncRNA	28008-1_{1..461}	lnc-LRCH1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-LRCH1-3:1	chr13	 47035082	 47035542	+	lnc-LRCH1-3	lnc-LRCH1-3:1	ENSG00000243079.1	RP11-189B4.5	LOC731932	NA	chr13:47025082-47035198	inter
LNCA_21_P0005502	0.8874064	A	1.05409	A	0.890888261463079	0	lncRNA	THC2702246	NA	NA	NA	NA	XLOC_006485	NA	NA	THC2702246	NA	"BROAD Institute lincRNA (XLOC_006485), lincRNA [TCONS_00013855]"	chr7:066795527-066795468	hs|7q11.21	Agilent_HUMAN_G3V2	THC2702246	THC2702246	chr7	 66795468	 66795527	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38177_PI429285431	0.9116067	A	1.3962721	A	0.714662800283717	0	lncRNA	39245-1_{1..1298}	n381433|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jah.1||-0.0542308|-0.2151139	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381433|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jah.1||-0.0542308|-0.2151139	chr10	 43169007	 43170304	-	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80"	NA	inter
CUST_36900_PI429285431	3.513438	P	3.3468118	P	1.12243056441344	0	lncRNA	38060-1_{1..3000}	n345373|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_922|NULL|-1.3352000|-0.3153113	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345373|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_922|NULL|-1.3352000|-0.3153113	chr19	 20967252	 20970251	+	NA	NA	NA	NA	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50"	NA	inter
CUST_36725_PI429285431	0.95312417	A	1.3190147	A	0.775989733227725	0	lncRNA	37902-1_{1..910}	n345209|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_758|NULL|-1.3786900|-0.4873484	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345209|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_758|NULL|-1.3786900|-0.4873484	chr13	 27632486	 27633395	+	NA	NA	NA	NA	USP12	NA	chr13:27640287-27649529	inter
CUST_45287_PI429285431	2.3841786	A	1.9588201	A	1.34290616445857	0	lncRNA	49735-1_{1..887}	"gi|397139300|ref|XR_159062.1| PREDICTED: Homo sapiens uncharacterized LOC100996662 (LOC100996662), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139300|ref|XR_159062.1| PREDICTED: Homo sapiens uncharacterized LOC100996662 (LOC100996662), misc_RNA"	Chr8	145926002	145926888	+	100996662	XR_159062.2	NA	NA	NA	"hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.94;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80"	NA	inter
CUST_45661_PI429285431	6.2319894	P	6.5777426	P	0.786897047314076	0	lncRNA	50037-1_{1..1038}	"gi|213417688|ref|NR_024467.1| Homo sapiens uncharacterized LOC100188947 (LOC100188947), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|213417688|ref|NR_024467.1| Homo sapiens uncharacterized LOC100188947 (LOC100188947), non-coding RNA"	Chr10	 93066719	 93067756	-	100188947	NR_024467.1	NA	NA	NA	NA	NA	inter
LNCA_19_P00316480	2.1383674	A	1.8910191	A	1.1870233379952	0	lncRNA	AK123416	NA	AK123416	NA	Hs.729217	LOC553137	uncharacterized LOC553137	NA	THC2509612	NA	"BROAD Institute lincRNA (XLOC_l2_013080), lincRNA [TCONS_l2_00025448]"	chr6:107218659-107218600	hs|6q21	Agilent_HUMAN_G3V2	AK123416	AK123416	chr6	107218600	107218659	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15358_PI429285431	7.837716	P	7.9825153	P	0.904505198723422	0	lncRNA	17041-1_{1..1613}	lnc-PANK1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PANK1-2:1	chr10	 91460857	 91462469	-	lnc-PANK1-2	lnc-PANK1-2:1	XLOC_008897	linc-PANK1-2	KIF20B	NA	chr10:91461367-91471177	inter
LNCA_21_P0014082	0.91148067	A	0.9242672	A	0.991176212921241	0	lncRNA	ENST00000436991	XR_108376	XR_108376	NA	Hs.665175	LOC100507013	NA	ENST00000436991	THC2523550	NA	"PREDICTED: Homo sapiens hypothetical LOC100507013 (LOC100507013), miscRNA [XR_108376]"	chr1:25972009-25971950	hs|1p36.11	Agilent_HUMAN_G3V2	ENST00000436991	ENST00000436991	chr1	 25971950	 25972009	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19034_PI429285431	10.303681	P	10.50576	P	0.869296957278635	0	lncRNA	20724-1_{1..548}	lnc-TPPP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TPPP2-1:1	chr14	 21485573	 21486120	+	lnc-TPPP2-1	lnc-TPPP2-1:1	ENSG00000258575	RP11-998D10.2	NDRG2	"hg19_refFlat_NDRG2:range=chr14:21485755-214914745'pad=0,hg19_refFlat_NDRG2:range=chr14:21485755-214914745'pad=0 3'pad=0 strand=- repeatMasking=none,-97.10chr14:21484922-21493935"	NA	inner
CUST_1413_PI429285431	4.3978004	P	4.6625767	P	0.83232778297561	0	lncRNA	1402-1_{1..651}	"transcript_id ""ENST00000594608.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000594608.1"" | genecode_v17"	chr3	107008050	107008700	-	ENSG00000239828.2	ENST00000594608.1	RP11-446H18.5	RP11-446H18.5-007	CCDC54	NA	chr3:107046680-107051589	inter
LNCA_21_P0001323	0.9075807	A	0.9188982	A	0.992185996088014	0	lncRNA	TCONS_00000998	NA	NA	NA	NA	XLOC_000263	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000263), lincRNA [TCONS_00000998]"	chr1:77686652-77686800	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_00000998	TCONS_00000998	chr1	 77686652	 77686800	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006094	0.89950067	A	0.9078192	A	0.99425062566028	0	lncRNA	ENST00000421507	NA	NA	NA	NA	XLOC_007811	NA	ENST00000421507	THC2680137	NA	"BROAD Institute lincRNA (XLOC_007811), lincRNA [TCONS_00015858]"	chr9:106124334-106124275	hs|9q31.1	Agilent_HUMAN_G3V2	ENST00000421507	ENST00000421507	chr9	106124275	106124334	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39105_PI429285431	3.0487924	A	2.9905825	A	1.04117306859352	0	lncRNA	40081-1_{1..869}	n385657|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azz.1||-1.1321100|-0.1915541	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385657|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004azz.1||-1.1321100|-0.1915541	chr9	102128680	102129548	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42267_PI429285431	5.059762	P	5.204171	P	0.904749932452095	0	lncRNA	44874-1_{1..141}	ENST00000516113 ncrna:snoRNA chromosome:GRCh37:10:6059017:6059157:-1 gene:ENSG00000251922 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516113 ncrna:snoRNA chromosome:GRCh37:10:6059017:6059157:-1 gene:ENSG00000251922 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	  6059017	  6059157	-	ENSG00000251922	ENST00000516113	NA	NA	IL2RA	NA	chr10:6052657-6069157	inner
LNCA_21_P0010042	3.4089663	P	2.8420959	A	1.48130672348341	0	lncRNA	TCONS_00028402	NA	NA	NA	NA	XLOC_013754	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013754), lincRNA [TCONS_00028402]"	chr20:43767198-43766520	hs|20q13.12	Agilent_HUMAN_G3V2	TCONS_00028402	TCONS_00028402	chr20	 43766520	 43767198	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47823_PI429285431	6.7443542	P	6.277902	P	1.38170746426131	0	lncRNA	51736-2_{3001..5233}	"gi|410170900|ref|XR_159147.2| PREDICTED: Homo sapiens leucine rich repeat containing 37, member A4, pseudogene (LRRC37A4P), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170900|ref|XR_159147.2| PREDICTED: Homo sapiens leucine rich repeat containing 37, member A4, pseudogene (LRRC37A4P), misc_RNA"	NT_167251.1	   200650	   202882	-	55073	XR_159147.3	NA	NA	NA	NA	NA	Unknown
CUST_49222_PI429285431	3.1087198	A	3.4448435	P	0.792166885797271	0	lncRNA	53042-1_{1..547}	hg19_lincRNAsTranscripts_TCONS_l2_00020937 range=chr4:186007451-186028403 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020937 range=chr4:186007451-186028403 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	186007451	186007997	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9172_PI429285431	1.5051736	A	1.007468	A	1.41196624558026	0	lncRNA	10689-1_{1..571}	lnc-FAM60A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FAM60A-1:2	chr12	 31213594	 31214164	-	lnc-FAM60A-1	lnc-FAM60A-1:2	ENSG00000245614	RP11-551L14.5	NA	NA	NA	inter
CUST_5995_PI429285431	9.435224	P	9.685964	P	0.840465205768337	0	lncRNA	5921-1_{1..643}	"transcript_id ""ENST00000586583.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000586583.1"" | genecode_v17"	chr17	 76338818	 76339460	+	ENSG00000267737.1	ENST00000586583.1	AC061992.2	AC061992.2-002	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
LNCA_21_P0011773	7.562843	P	7.368311	P	1.14435288045442	0	lncRNA	ENST00000492393	XR_133194	XR_133194	NA	NA	XLOC_l2_006862	NA	ENST00000492393	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100653267 (LOC100653267), miscRNA [XR_133194]"	chr19:59100481-59100629	hs|19q13.43	Agilent_HUMAN_G3V2	ENST00000492393	ENST00000492393	chr19	 59100481	 59100629	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42173_PI429285431	5.4481983	P	5.4950433	P	0.968051026592044	0	lncRNA	44225-1_{1..70}	ENST00000384819 ncrna:miRNA chromosome:GRCh37:19:52195865:52195934:1 gene:ENSG00000207550 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384819 ncrna:miRNA chromosome:GRCh37:19:52195865:52195934:1 gene:ENSG00000207550 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 52195865	 52195934	+	ENSG00000207550	ENST00000384819	NA	NA	NA	NA	NA	inter
CUST_2892_PI429285431	0.89914805	A	1.133334	A	0.850164574679438	0	lncRNA	2873-1_{1..570}	"transcript_id ""ENST00000392471.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000392471.2"" | genecode_v17"	chr7	100107340	100107909	+	ENSG00000225807.1	ENST00000392471.2	RP11-44M6.1	RP11-44M6.1-001	NA	"hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-26.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80"	NA	inter
CUST_35353_PI429285431	3.38386	P	3.0019236	A	1.30308970248123	0	lncRNA	36764-1_{1..835}	n342397|AY166790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4889|NULL|1.6503600|-0.1168041	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342397|AY166790|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4889|NULL|1.6503600|-0.1168041	chr19	 44891448	 44892282	-	NA	NA	NA	NA	ZNF285	NA	chr19:44889808-44902264	inner
CUST_38862_PI429285431	7.6041	P	7.4776344	P	1.09161611674783	0	lncRNA	39852-1_{1..2238}	n384730|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kup.1||1.6396400|-0.1520718	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n384730|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003kup.1||1.6396400|-0.1520718	chr5	127301575	127303812	-	NA	NA	NA	NA	SLC12A2	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-53.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40chr5:127419483-127429299"	NA	inter
CUST_43441_PI429285431	6.3722873	P	6.5689774	P	0.872550114913275	0	lncRNA	48249-1_{1..2059}	"gi|395132437|ref|NR_073020.1| Homo sapiens ST3 beta-galactoside alpha-2,3-sialyltransferase 3 (ST3GAL3), transcript variant 23, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|395132437|ref|NR_073020.1| Homo sapiens ST3 beta-galactoside alpha-2,3-sialyltransferase 3 (ST3GAL3), transcript variant 23, non-coding RNA"	Chr1	 44173204	 44175262	+	6487	NR_073020.1	NA	NA	NA	NA	NA	inter
CUST_27533_PI429285431	1.0194811	A	0.92127585	A	1.07044097758223	0	lncRNA	29109-1_{1..1930}	n324718|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320108|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320108|-1.1922200|-0.2278075	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324718|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000320108|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000320108|-1.1922200|-0.2278075	chr22	 19985285	 19987214	-	NA	NA	NA	NA	C22orf25	NA	chr22:20008631-20019331	inner
CUST_4240_PI429285431	1.7812593	A	1.45687	A	1.25213429173985	0	lncRNA	4198-1_{1..3000}	"transcript_id ""ENST00000547799.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547799.1"" | genecode_v17"	chr12	 48099868	 48102867	+	ENSG00000257433.1	ENST00000547799.1	RP1-197B17.3	RP1-197B17.3-001	RAPGEF3	"hg19_refFlat_RAPGEF3:range=chr12:48131350-481517415'pad=0,hg19_refFlat_RAPGEF3:range=chr12:48131350-481517415'pad=0 3'pad=0 strand=- repeatMasking=none,-100.30;hg19_refFlat_ENDOU:range=chr12:48104585-481191965'pad=0,hg19_refFlat_ENDOU:range=chr12:48104585-481191965'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_RAPGEF3:range=chr12:48131350-481523395'pad=0,hg19_refFlat_RAPGEF3:range=chr12:48131350-481523395'pad=0 3'pad=0 strand=- repeatMasking=none,-100.30chr12:48128453-48146077"	NA	inner
CUST_13574_PI429285431	9.354672	P	9.400679	P	0.968613489473261	0	lncRNA	15215-1_{1..468}	lnc-ABCB4-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABCB4-1:3	chr7	 86974621	 86975088	-	lnc-ABCB4-1	lnc-ABCB4-1:3	XLOC_006516	linc-C7orf23	CROT	NA	chr7:86974951-86984831	inter
CUST_42760_PI429285431	5.2459793	P	5.419979	P	0.886381883512779	0	lncRNA	45727-1_{1..140}	ENST00000384183 ncrna:snoRNA chromosome:GRCh37:6:160206626:160206765:-1 gene:ENSG00000206910 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384183 ncrna:snoRNA chromosome:GRCh37:6:160206626:160206765:-1 gene:ENSG00000206910 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	160206626	160206765	-	ENSG00000206910	ENST00000384183	NA	NA	MRPL18	NA	chr6:160211492-160216765	inner
LNCA_33_P3339253	10.030506	P	10.34744	P	0.802774112956381	0	lncRNA	XR_132560	XR_132560	XR_132560	   646808	NA	LOC646808	"L antigen family, member 3 pseudogene"	NA	NA	NA	"PREDICTED: Homo sapiens L antigen family member 3-like (LOC646808), miscRNA [XR_132560]"	chr9:33019659-33019600	hs|9p21.1	Agilent_HUMAN_G3V2	XR_132560	XR_132560	chr9	 33019600	 33019659	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4951_PI429285431	4.438466	P	4.781747	P	0.788246628872554	0	lncRNA	4895-1_{1..1376}	"transcript_id ""ENST00000444942.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444942.1"" | genecode_v17"	chr14	 90921673	 90923048	+	ENSG00000233208.1	ENST00000444942.1	LINC00642	LINC00642-002	NA	NA	NA	inter
LNCA_21_P0013772	3.7332926	P	3.4752958	P	1.19581714436588	0	lncRNA	ENST00000453317	NA	NA	NA	NA	XLOC_l2_015561	NA	ENST00000453317	THC2574630	NA	"BROAD Institute lincRNA (XLOC_l2_015561), lincRNA [TCONS_l2_00030254]"	chrX:73164542-73164601	hs|Xq13.2	Agilent_HUMAN_G3V2	ENST00000453317	ENST00000453317	chrX	 73164542	 73164601	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004522	2.913017	A	3.4859896	P	0.672230264108711	0	lncRNA	TCONS_00010754	NA	NA	NA	NA	XLOC_004490	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004490), lincRNA [TCONS_00010754]"	chr5:99744667-99744726	hs|5q21.1	Agilent_HUMAN_G3V2	TCONS_00010754	TCONS_00010754	chr5	 99744667	 99744726	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9147_PI429285431	4.323431	P	5.202417	P	0.543749471979628	0	lncRNA	10666-1_{1..318}	lnc-FAM120B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM120B-2:1	chr6	170588297	170588614	+	lnc-FAM120B-2	lnc-FAM120B-2:1	ENSG00000227508	XLOC_005564	DLL1	NA	chr6:170591294-170598557	inter
CUST_49588_PI429285431	2.7331944	A	2.2269046	A	1.42039264991699	0	lncRNA	53378-1_{1..523}	hg19_lincRNAsTranscripts_TCONS_l2_00024958 range=chr6:143360526-143379261 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024958 range=chr6:143360526-143379261 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6	143360526	143361048	-	NA	NA	NA	NA	AIG1	NA	chr6:143382023-143389261	inter
LNCA_21_P0007835	0.8941774	A	0.89907616	A	0.996610196717818	0	lncRNA	TCONS_00021112	NA	NA	NA	NA	XLOC_009724	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009724), lincRNA [TCONS_00021112]"	chr12:46804805-46805959	hs|12q13.11	Agilent_HUMAN_G3V2	TCONS_00021112	TCONS_00021112	chr12	 46804805	 46805959	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22818_PI429285431	0.9282404	A	0.9580577	A	0.979544337258571	0	lncRNA	24398-1_{1..1754}	lnc-NKIRAS1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-NKIRAS1-2:1	chr3	 24499468	 24501221	-	lnc-NKIRAS1-2	lnc-NKIRAS1-2:1	ENSG00000224822.1	THRB-IT1	THRB	NA	chr3:24489468-24510925	inner
LNCA_21_P0004459	7.63205	P	6.824215	P	1.75058243507792	0	lncRNA	TCONS_00010532	NA	NA	NA	NA	XLOC_005052	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005052), lincRNA [TCONS_00010532]"	chr5:149855138-149855079	hs|5q33.1	Agilent_HUMAN_G3V2	TCONS_00010532	TCONS_00010532	chr5	149855079	149855138	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008350	3.940392	P	3.948007	P	0.994735590051558	0	lncRNA	TCONS_00023007	NA	NA	NA	NA	XLOC_010856	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010856), lincRNA [TCONS_00023007]"	chr14:66592535-66592594	hs|14q23.3	Agilent_HUMAN_G3V2	TCONS_00023007	TCONS_00023007	chr14	 66592535	 66592594	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006941	5.1913524	P	4.5448194	P	1.56540179034957	0	lncRNA	TCONS_00018396	NA	NA	NA	NA	XLOC_008678	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008678), lincRNA [TCONS_00018396]"	chr10:134827595-134827841	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_00018396	TCONS_00018396	chr10	134827595	134827841	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23000_PI429285431	0.90384835	A	0.9028586	A	1.00068627780289	0	lncRNA	24574-1_{1..814}	lnc-ZAP70-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ZAP70-2:4	chr2	 98317617	 98318430	+	lnc-ZAP70-2	lnc-ZAP70-2:4	ENSG00000228486.2	AC017099.3	NA	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70"	NA	inter
CUST_4595_PI429285431	0.91637146	A	0.89783704	A	1.01292995924535	0	lncRNA	4544-1_{1..525}	"transcript_id ""ENST00000454060.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454060.1"" | genecode_v17"	chr13	 38627835	 38628359	-	ENSG00000223685.1	ENST00000454060.1	LINC00571	LINC00571-003	NA	NA	NA	inter
LNCA_21_P0009534	1.2496505	A	2.867334	A	0.325858266639259	0	lncRNA	TCONS_00026460	NA	NA	NA	NA	XLOC_012792	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012792), lincRNA [TCONS_00026460]"	chr18:22096745-22096686	hs|18q11.2	Agilent_HUMAN_G3V2	TCONS_00026460	TCONS_00026460	chr18	 22096686	 22096745	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47929_PI429285431	3.1908896	A	3.754446	P	0.676632134451781	0	lncRNA	51820-1_{1..777}	"gi|410172226|ref|XR_171673.1| PREDICTED: Homo sapiens putative speedy protein E8-like (LOC101060283), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172226|ref|XR_171673.1| PREDICTED: Homo sapiens putative speedy protein E8-like (LOC101060283), misc_RNA"	NA	NA	NA	NA	NA	XR_171673.1	NA	NA	NA	NA	NA	Unknown
CUST_24243_PI429285431	1.3223889	A	0.8844757	A	1.35464347267155	0	lncRNA	25794-1_{1..436}	lnc-AL445989.1-16:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL445989.1-16:1	chr13	 67575978	 67576413	+	lnc-AL445989.1-16	lnc-AL445989.1-16:1	ENSG00000233840.1	PCDH9-AS4	PCDH9	NA	chr13:67565978-67586139	inner
LNCA_21_P0007172	0.8907183	A	0.8779788	A	1.00886945104572	0	lncRNA	TCONS_00019230	NA	NA	NA	NA	XLOC_009060	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009060), lincRNA [TCONS_00019230]"	chr11:10323990-10324049	hs|11p15.4	Agilent_HUMAN_G3V2	TCONS_00019230	TCONS_00019230	chr11	 10323990	 10324049	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6605_PI429285431	5.371625	P	5.648752	P	0.825232760329442	0	lncRNA	6553-1_{1..784}	"transcript_id ""ENST00000593218.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000593218.1"" | genecode_v17"	chr19	 57049017	 57049800	-	ENSG00000267421.2	ENST00000593218.1	AC005498.3	AC005498.3-004	ZNF471	NA	chr19:57039017-57040270	inter
CUST_13132_PI429285431	8.466797	P	7.921465	P	1.45935613973435	0	lncRNA	14760-1_{1..502}	lnc-TMEM30B-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM30B-3:6	chr14	 62032038	 62032539	-	lnc-TMEM30B-3	lnc-TMEM30B-3:6	XLOC_011047	linc-TMEM30B	NA	NA	NA	inter
CUST_33040_PI429285431	4.8617754	P	5.37074	P	0.702726592982476	0	lncRNA	34654-1_{1..3000}	n339730|BC036509|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2175|NULL|-0.0770275|-0.2782853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339730|BC036509|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2175|NULL|-0.0770275|-0.2782853	chr3	186569674	186572673	-	NA	NA	NA	NA	ADIPOQ	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ADIPOQ:range=chr3:186570848-1865724935'pad=0,hg19_refFlat_ADIPOQ:range=chr3:186570848-1865724935'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90chr3:186560463-186576252"	NA	inner
CUST_8765_PI429285431	2.8411949	A	3.1519601	A	0.806214032922306	0	lncRNA	10308-1_{1..655}	lnc-PLEKHA3-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PLEKHA3-1:4	chr2	179402331	179402985	+	lnc-PLEKHA3-1	lnc-PLEKHA3-1:4	ENSG00000237298	AC009948.3	TTN	"hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70chr2:179392331-179412395"	NA	inter
CUST_33582_PI429285431	0.9308775	A	1.3806936	A	0.732136167251282	0	lncRNA	35147-1_{1..327}	n340335|AF009261|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2796|NULL|-1.1592400|-0.2597910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340335|AF009261|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2796|NULL|-1.1592400|-0.2597910	chr5	  9265652	  9265978	+	NA	NA	NA	NA	SEMA5A	NA	chr5:9255652-9275979	inner
LNCA_21_P0007258	1.4349769	A	1.4420199	A	0.995130061199426	0	lncRNA	ENST00000525832	NA	NA	NA	NA	XLOC_009248	NA	ENST00000525832	THC2769289	NA	"BROAD Institute lincRNA (XLOC_009248), lincRNA [TCONS_00019437]"	chr11:91545355-91545414	hs|11q14.3	Agilent_HUMAN_G3V2	ENST00000525832	ENST00000525832	chr11	 91545355	 91545414	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36615_PI429285431	2.2656298	A	2.072806	A	1.1429987295587	0	lncRNA	37808-1_{1..734}	n345111|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_660|NULL|-1.5972000|-0.1696954	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345111|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_660|NULL|-1.5972000|-0.1696954	chr10	 29710567	 29711300	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013577	0.919898	A	1.9667009	A	0.484039638090838	0	lncRNA	AL117574	NA	AL117574	NA	NA	XLOC_l2_014830	NA	NA	THC2615996	NA	"BROAD Institute lincRNA (XLOC_l2_014830), lincRNA [TCONS_l2_00028790]"	chr20:29614452-29614511	hs|20q11.21	Agilent_HUMAN_G3V2	AL117574	AL117574	chr20	 29614452	 29614511	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004488	0.91557884	A	0.984318	A	0.953470917733923	0	lncRNA	TCONS_00010622	NA	NA	NA	NA	XLOC_004290	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004290), lincRNA [TCONS_00010622]"	chr5:9854874-9857544	hs|5p15.2	Agilent_HUMAN_G3V2	TCONS_00010622	TCONS_00010622	chr5	  9854874	  9857544	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28279_PI429285431	0.90780115	A	0.91135466	A	0.997539925517575	0	lncRNA	29914-1_{1..1537}	n325573|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129997|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129997|-1.2871600|-0.3696012	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325573|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000129997|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000129997|-1.2871600|-0.3696012	chr17	 14054529	 14056065	+	NA	NA	NA	NA	COX10	NA	chr17:14044529-14071964	inner
LNCA_21_P0011543	6.455221	P	7.1191983	P	0.631135946549245	0	lncRNA	TCONS_l2_00010777	NA	NA	NA	NA	XLOC_l2_005787	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005787), lincRNA [TCONS_l2_00010777]"	chr17:40700049-40700108	hs|17q21.2	Agilent_HUMAN_G3V2	TCONS_l2_00010777	TCONS_l2_00010777	chr17	 40700049	 40700108	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41238_PI429285431	0.9155247	A	0.9268315	A	0.992193354836209	0	lncRNA	42160-1_{1..90}	ENST00000583685 ncrna:miRNA chromosome:GRCh37:4:153410479:153410568:-1 gene:ENSG00000264678 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583685 ncrna:miRNA chromosome:GRCh37:4:153410479:153410568:-1 gene:ENSG00000264678 gene_biotype:miRNA transcript_biotype:miRNA	chr4	153410479	153410568	-	ENSG00000264678	ENST00000583685	NA	NA	FBXW7	NA	chr4:153400479-153420568	inner
CUST_49264_PI429285431	2.17874	A	1.1536727	A	2.03505431484356	0	lncRNA	53083-1_{1..436}	hg19_lincRNAsTranscripts_TCONS_l2_00023525 range=chr5:121495871-121518353 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023525 range=chr5:121495871-121518353 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	121495871	121496306	+	NA	NA	NA	NA	LOC100505841	NA	chr5:121495871-121518358	inner
LNCA_21_P0004506	4.257054	P	4.4086857	P	0.900231717111609	0	lncRNA	TCONS_00010703	NA	NA	NA	NA	XLOC_004408	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004408), lincRNA [TCONS_00010703]"	chr5:65619260-65619319	hs|5q12.3	Agilent_HUMAN_G3V2	TCONS_00010703	TCONS_00010703	chr5	 65619260	 65619319	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42108_PI429285431	5.3011665	P	5.3511395	P	0.965954406567167	0	lncRNA	44067-1_{1..81}	ENST00000584082 ncrna:miRNA chromosome:GRCh37:15:83736087:83736167:1 gene:ENSG00000263643 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584082 ncrna:miRNA chromosome:GRCh37:15:83736087:83736167:1 gene:ENSG00000263643 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 83736087	 83736167	+	ENSG00000263643	ENST00000584082	NA	NA	BTBD1	NA	chr15:83726087-83736106	inner
CUST_12743_PI429285431	0.8904883	A	1.0540721	A	0.892804497580438	0	lncRNA	14368-1_{1..332}	lnc-BHLHE22-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BHLHE22-3:2	chr8	 65929480	 65929811	+	lnc-BHLHE22-3	lnc-BHLHE22-3:2	XLOC_006825	linc-MTFR1-1	NA	NA	NA	inter
LNCA_21_P0002791	3.115223	P	3.3193119	P	0.868086733767473	0	lncRNA	ENST00000498413	NA	NA	NA	NA	XLOC_002904	NA	ENST00000498413	NA	NA	"BROAD Institute lincRNA (XLOC_002904), lincRNA [TCONS_00005644]"	chr3:167117300-167117359	hs|3q26.1	Agilent_HUMAN_G3V2	ENST00000498413	ENST00000498413	chr3	167117300	167117359	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42444_PI429285431	4.086908	P	4.4895363	P	0.756478874877443	0	lncRNA	45170-1_{1..132}	ENST00000384174 ncrna:snoRNA chromosome:GRCh37:2:140268994:140269125:1 gene:ENSG00000206901 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384174 ncrna:snoRNA chromosome:GRCh37:2:140268994:140269125:1 gene:ENSG00000206901 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	140268994	140269125	+	ENSG00000206901	ENST00000384174	NA	NA	NA	NA	NA	inter
CUST_45515_PI429285431	2.2270472	A	2.525221	A	0.813281217071746	0	lncRNA	49924-2_{3001..3163}	"gi|333360894|ref|NR_038222.1| Homo sapiens uncharacterized LOC219731 (LOC219731), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|333360894|ref|NR_038222.1| Homo sapiens uncharacterized LOC219731 (LOC219731), non-coding RNA"	Chr10	 11894607	 11894769	-	219731	NR_038222.1	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70"	NA	inter
CUST_15829_PI429285431	5.096629	P	5.412817	P	0.803189324994984	0	lncRNA	17519-1_{1..1539}	lnc-CHMP7-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHMP7-1:5	chr8	 23088213	 23089751	+	lnc-CHMP7-1	lnc-CHMP7-1:5	XLOC_006742	linc-CHMP7	TNFRSF10A	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50chr8:23078213-23082680"	NA	inter
CUST_41723_PI429285431	4.132265	P	3.660832	P	1.38648595302263	0	lncRNA	43245-1_{1..97}	ENST00000384876 ncrna:miRNA chromosome:GRCh37:14:101349316:101349412:1 gene:ENSG00000207608 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384876 ncrna:miRNA chromosome:GRCh37:14:101349316:101349412:1 gene:ENSG00000207608 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101349316	101349412	+	ENSG00000207608	ENST00000384876	NA	NA	RTL1	"hg19_refFlat_RTL1:range=chr14:101347049-1013511255'pad=0,hg19_refFlat_RTL1:range=chr14:101347049-1013511255'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00chr14:101346992-101351184"	NA	inter
LNCA_21_P0014581	1.2926352	A	2.0369072	A	0.59696903275342	0	lncRNA	XR_110375	XR_110375	XR_110375	NA	NA	LOC100288798	uncharacterized LOC100288798	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100288798 (LOC100288798), miscRNA [XR_110375]"	chr12:46965179-47268642	hs|12q13.11	Agilent_HUMAN_G3V2	XR_110375	XR_110375	chr12	 46965179	 47268642	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005687	1.7191389	A	1.7202516	A	0.999229032480489	0	lncRNA	TCONS_00014674	NA	NA	NA	NA	XLOC_006773	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006773), lincRNA [TCONS_00014674]"	chr8:37423073-37423132	hs|8p11.23	Agilent_HUMAN_G3V2	TCONS_00014674	TCONS_00014674	chr8	 37423073	 37423132	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_32_P12327	4.5524993	P	3.7555761	P	1.73739188003532	0	lncRNA	XR_110056	XR_110056	XR_110056	   643783	NA	LOC643783	uncharacterized LOC643783	ENST00000503051	THC2658340	NA	"PREDICTED: Homo sapiens hypothetical LOC643783, transcript variant 2 (LOC643783), miscRNA [XR_110056]"	chr4:53527427-53527486	hs|4q12	Agilent_HUMAN_G3V2	XR_110056	XR_110056	chr4	 53527427	 53527486	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008208	2.5743008	A	1.5234339	A	2.07177438077042	0	lncRNA	TCONS_00022101	NA	NA	NA	NA	XLOC_010712	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010712), lincRNA [TCONS_00022101]"	chr13:105605741-105599347	hs|13q33.2	Agilent_HUMAN_G3V2	TCONS_00022101	TCONS_00022101	chr13	105599347	105605741	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003481	3.1353776	P	3.3854046	P	0.840880678046533	0	lncRNA	ENST00000513871	NA	NA	NA	NA	XLOC_003994	NA	ENST00000513871	NA	NA	"BROAD Institute lincRNA (XLOC_003994), lincRNA [TCONS_00007784]"	chr4:78415395-78415336	hs|4q21.1	Agilent_HUMAN_G3V2	ENST00000513871	ENST00000513871	chr4	 78415336	 78415395	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011713	10.233473	P	9.782198	P	1.36724804573962	0	lncRNA	TCONS_l2_00012703	NA	NA	NA	NA	XLOC_l2_006821	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006821), lincRNA [TCONS_l2_00012703]"	chr19:55184057-55184116	hs|19q13.42	Agilent_HUMAN_G3V2	TCONS_l2_00012703	TCONS_l2_00012703	chr19	 55184057	 55184116	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27948_PI429285431	1.853009	A	2.2546973	A	0.75697192561298	0	lncRNA	29552-1_{1..511}	n325195|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329972|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329972|-0.8442410|-0.2535892	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325195|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000329972|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000329972|-0.8442410|-0.2535892	chr2	106525901	106526411	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19705_PI429285431	1.691171	A	1.3623391	A	1.25599602642064	0	lncRNA	21362-1_{1..486}	lnc-LRRTM1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRTM1-1:1	chr2	 80257628	 80258113	-	lnc-LRRTM1-1	lnc-LRRTM1-1:1	ENSG00000224731.1	AC016716.2	CTNNA2	NA	chr2:80247628-80267677	inner
LNCA_21_P0009498	0.9299747	A	1.9793005	A	0.483193917807915	0	lncRNA	TCONS_00026360	NA	NA	NA	NA	XLOC_012712	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012712), lincRNA [TCONS_00026360]"	chr18:69445025-69445084	hs|18q22.3	Agilent_HUMAN_G3V2	TCONS_00026360	TCONS_00026360	chr18	 69445025	 69445084	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33928_PI429285431	1.3524445	A	2.5664535	A	0.431069083351532	0	lncRNA	35469-1_{1..543}	n340726|S71020|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3189|NULL|-1.1435200|-0.1761418	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340726|S71020|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3189|NULL|-1.1435200|-0.1761418	chr17	 46371706	 46372248	+	NA	NA	NA	NA	SKAP1	NA	chr17:46361706-46395037	inner
CUST_13118_PI429285431	5.3316655	P	5.3683233	P	0.97491084741328	0	lncRNA	14743-1_{1..842}	lnc-SH2D7-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SH2D7-5:1	chr15	 78080231	 78081072	+	lnc-SH2D7-5	lnc-SH2D7-5:1	XLOC_011317	linc-SH2D7-1	NA	NA	NA	inter
CUST_5421_PI429285431	1.2128215	A	1.5176791	A	0.809522115803386	0	lncRNA	5355-1_{1..536}	"transcript_id ""ENST00000568030.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568030.1"" | genecode_v17"	chr16	  9535151	  9535686	-	ENSG00000261397.1	ENST00000568030.1	RP11-243A14.2	RP11-243A14.2-001	NA	NA	NA	inter
CUST_25876_PI429285431	2.353292	A	1.5705752	A	1.72036752116652	0	lncRNA	27396-1_{1..909}	lnc-ACOT12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACOT12-1:1	chr5	 80597106	 80598014	-	lnc-ACOT12-1	lnc-ACOT12-1:1	ENSG00000247572.2	CTC-281B15.1	ZCCHC9	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.40;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60chr5:80597402-80607379"	NA	inter
CUST_47792_PI429285431	0.90686	A	1.3805175	A	0.720136601489765	0	lncRNA	51713-1_{1..2057}	"gi|56605984|ref|NR_002193.1| Homo sapiens RNA binding motif protein, Y-linked, family 2, member F pseudogene (RBMY2FP), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|56605984|ref|NR_002193.1| Homo sapiens RNA binding motif protein, Y-linked, family 2, member F pseudogene (RBMY2FP), non-coding RNA"	NA	NA	NA	NA	NA	NR_002193.1	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80"	NA	Unknown
CUST_44794_PI429285431	2.8072538	A	2.5214515	A	1.21908802466102	0	lncRNA	49330-2_{3001..4943}	"gi|300795874|ref|NR_034108.1| Homo sapiens TRAF3IP2 antisense RNA 1 (TRAF3IP2-AS1), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300795874|ref|NR_034108.1| Homo sapiens TRAF3IP2 antisense RNA 1 (TRAF3IP2-AS1), transcript variant 1, non-coding RNA"	Chr6	111807675	111809617	+	643749	NR_034108.1	NA	NA	NA	NA	NA	inter
CUST_41443_PI429285431	7.1586785	P	7.232482	P	0.950129784989271	0	lncRNA	42621-1_{1..90}	ENST00000578903 ncrna:miRNA chromosome:GRCh37:10:687629:687718:-1 gene:ENSG00000263511 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578903 ncrna:miRNA chromosome:GRCh37:10:687629:687718:-1 gene:ENSG00000263511 gene_biotype:miRNA transcript_biotype:miRNA	chr10	   687629	   687718	-	ENSG00000263511	ENST00000578903	NA	NA	DIP2C	NA	chr10:677629-697718	inner
CUST_47864_PI429285431	6.4023137	P	5.2259727	P	2.26002855356927	0	lncRNA	51765-2_{3001..4732}	"gi|410171170|ref|XR_171189.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410171170|ref|XR_171189.1| PREDICTED: Homo sapiens neuroblastoma breakpoint family, member 8 (NBPF8), misc_RNA"	NA	NA	NA	NA	NA	XR_171189.1	NA	NA	NA	NA	NA	Unknown
CUST_38713_PI429285431	0.91177523	A	0.90176594	A	1.00696203420404	0	lncRNA	39707-1_{1..1411}	n384146|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003apj.1||-0.6871900|-0.1789019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384146|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003apj.1||-0.6871900|-0.1789019	chr22	 36730923	 36732333	-	NA	NA	NA	NA	MYH9	NA	chr22:36720923-36742334	inner
LNCA_21_P0003721	0.88881713	A	0.8876393	A	1.00081674289666	0	lncRNA	TCONS_00008436	NA	NA	NA	NA	XLOC_003882	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003882), lincRNA [TCONS_00008436]"	chr4:11742359-11742300	hs|4p15.33	Agilent_HUMAN_G3V2	TCONS_00008436	TCONS_00008436	chr4	 11742300	 11742359	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18711_PI429285431	1.0923715	A	1.1742922	A	0.944798971930127	0	lncRNA	20409-1_{1..1888}	lnc-PPIAL4G-6:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PPIAL4G-6:8	chr1	143194122	143196009	-	lnc-PPIAL4G-6	lnc-PPIAL4G-6:8	ENSG00000232274	BX571672.2	NA	NA	NA	inter
CUST_42326_PI429285431	6.654968	P	6.797857	P	0.905703664576672	0	lncRNA	44967-1_{1..117}	ENST00000516310 ncrna:snoRNA chromosome:GRCh37:11:119194003:119194119:-1 gene:ENSG00000252119 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516310 ncrna:snoRNA chromosome:GRCh37:11:119194003:119194119:-1 gene:ENSG00000252119 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	119194003	119194119	-	ENSG00000252119	ENST00000516310	NA	NA	MCAM	NA	chr11:119184003-119187840	inter
CUST_139_PI429285431	2.221184	A	2.7877274	A	0.675232663809862	0	lncRNA	130-2_{3001..4247}	"transcript_id ""ENST00000445317.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000445317.1"" | genecode_v17"	chr1	  2979181	  2980427	-	ENSG00000177133.5	ENST00000445317.1	RP1-163G9.1	RP1-163G9.1-002	PRDM16	NA	chr1:2985742-2995001	inter
CUST_308_PI429201921	0.90564024	A	0.9075612	A	0.998669378055509	0	lncRNA	210-2_{3001..6000}	TC13001298.hg.1	TCONS_l2_00007471-XLOC_l2_003859 // Broad TUCP // linc-ARHGEF7-2 chr13:+:111635653-111642911 // chr13 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr13:+:111635653-111642911	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00007471-XLOC_l2_003859	linc-ARHGEF7-2	chr13	111635653	111642911	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47702_PI429285431	1.2869723	A	1.3780851	A	0.938798342617982	0	lncRNA	51669-2_{3001..5945}	"gi|385137084|ref|NR_047622.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 52, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137084|ref|NR_047622.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 52, non-coding RNA"	ChrY	 15363259	 15366203	-	7404	NR_047622.1	NA	NA	NA	NA	NA	inter
CUST_11098_PI429285431	1.8881154	A	2.1491642	A	0.834481053870351	0	lncRNA	12653-1_{1..881}	lnc-DIAPH3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DIAPH3-1:1	chr13	 60207593	 60208473	-	lnc-DIAPH3-1	lnc-DIAPH3-1:1	XLOC_010632	linc-PCDH8-4	NA	NA	NA	inter
LNCA_21_P0002162	5.3806553	P	5.0719275	P	1.23861498047287	0	lncRNA	TCONS_00003558	NA	NA	NA	NA	XLOC_001334	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001334), lincRNA [TCONS_00003558]"	chr2:9148909-9148968	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_00003558	TCONS_00003558	chr2	  9148909	  9148968	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32008_PI429285431	1.0288938	A	1.4074284	A	0.76921851835379	0	lncRNA	33729-1_{1..1047}	n338571|BC039524|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|977|NULL|-1.1797600|-0.2195299	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338571|BC039524|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|977|NULL|-1.1797600|-0.2195299	chr19	 37063971	 37065017	+	NA	NA	NA	NA	ZNF529	NA	chr19:37053971-37095610	inter
CUST_9480_PI429285431	4.36137	P	4.5084286	P	0.903089827320607	0	lncRNA	10987-1_{1..281}	lnc-JAM3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JAM3-1:1	chr11	133914003	133914283	+	lnc-JAM3-1	lnc-JAM3-1:1	XLOC_009342	linc-JAM3-1	NA	NA	NA	inter
CUST_49244_PI429285431	0.9300445	A	1.9938705	A	0.478361769636378	0	lncRNA	53066-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00022197 range=chr5:10564450-10657959 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022197 range=chr5:10564450-10657959 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 10564450	 10567449	+	NA	NA	NA	NA	ANKRD33B	NA	chr5:10564435-10657928	inner
CUST_43163_PI429285431	1.7584912	A	2.9138885	A	0.448942536310379	0	lncRNA	47978-1_{1..684}	ENST00000591343 havana:sense_intronic chromosome:GRCh37:17:40647885:40648568:1 gene:ENSG00000267222 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000591343 havana:sense_intronic chromosome:GRCh37:17:40647885:40648568:1 gene:ENSG00000267222 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr17	 40647885	 40648568	+	ENSG00000267222	ENST00000591343	NA	NA	ATP6V0A1	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-12.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-32.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10chr17:40637885-40658568"	NA	inner
CUST_44655_PI429285431	5.94888	P	5.8362346	P	1.08120898047681	0	lncRNA	49217-1_{1..2674}	"gi|401709979|ref|NR_073112.1| Homo sapiens serpin peptidase inhibitor, clade B (ovalbumin), member 1 (SERPINB1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|401709979|ref|NR_073112.1| Homo sapiens serpin peptidase inhibitor, clade B (ovalbumin), member 1 (SERPINB1), transcript variant 3, non-coding RNA"	Chr6	  2832566	  2835239	-	1992	NR_073112.1	NA	NA	NA	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70"	NA	inter
CUST_38610_PI429285431	3.4917789	A	3.667335	P	0.885426157704573	0	lncRNA	39615-2_{3001..3793}	n383732|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tpy.1||1.1919600|-0.3722569	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n383732|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002tpy.1||1.1919600|-0.3722569	chr2	130786575	130787367	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00"	NA	inter
LNCA_21_P0013224	0.9268703	A	1.2174515	A	0.817572627233909	0	lncRNA	TCONS_l2_00025960	NA	NA	NA	NA	XLOC_l2_013458	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013458), lincRNA [TCONS_l2_00025960]"	chr7:64649544-64649603	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025960	TCONS_l2_00025960	chr7	 64649544	 64649603	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45269_PI429285431	3.707571	P	4.328582	P	0.650215115612825	0	lncRNA	49720-1_{1..3000}	"gi|377520146|ref|NR_046360.1| Homo sapiens family with sequence similarity 49, member B (FAM49B), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|377520146|ref|NR_046360.1| Homo sapiens family with sequence similarity 49, member B (FAM49B), transcript variant 4, non-coding RNA"	Chr8	130851839	130854838	-	51571	NR_046360.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0010406	0.9180499	A	2.7202575	A	0.286735492608882	0	lncRNA	TCONS_00029558	NA	NA	NA	NA	XLOC_014192	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014192), lincRNA [TCONS_00029558]"	chr22:27232762-27238290	hs|22q12.1	Agilent_HUMAN_G3V2	TCONS_00029558	TCONS_00029558	chr22	 27232762	 27238290	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46930_PI429285431	6.0681214	P	5.3686056	P	1.62395966486805	0	lncRNA	51040-1_{1..1353}	"gi|331028536|ref|NR_038131.1| Homo sapiens unkempt homolog (Drosophila) (UNK), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|331028536|ref|NR_038131.1| Homo sapiens unkempt homolog (Drosophila) (UNK), transcript variant 2, non-coding RNA"	Chr17	 73780920	 73782272	+	85451	NR_038131.1	NA	NA	NA	NA	NA	inter
CUST_41701_PI429285431	0.9026696	A	0.90647924	A	0.997362842201257	0	lncRNA	43192-1_{1..98}	ENST00000385133 ncrna:miRNA chromosome:GRCh37:X:146360765:146360862:-1 gene:ENSG00000207868 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385133 ncrna:miRNA chromosome:GRCh37:X:146360765:146360862:-1 gene:ENSG00000207868 gene_biotype:miRNA transcript_biotype:miRNA	chrX	146360765	146360862	-	ENSG00000207868	ENST00000385133	NA	NA	NA	NA	NA	inter
CUST_33898_PI429285431	5.347454	P	3.1532152	P	4.57648134554917	0	lncRNA	35441-2_{3001..4595}	n340689|AK128316|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3152|NULL|-1.2580500|-0.4240772	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340689|AK128316|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3152|NULL|-1.2580500|-0.4240772	chr5	151189315	151190909	+	NA	NA	NA	NA	G3BP1	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90chr5:151176315-151184915"	NA	inter
CUST_164_PI429201921	1.4415164	A	1.8313122	A	0.763237625988328	0	lncRNA	140-2_{3001..4194}	TC0Y000292.hg.1	TCONS_00017622-XLOC_008312 // Rinn lincRNAs // linc-SRY-2 chrY:-:6225259-6229454 // chrY // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:6225259-6229454	NA	Affy_HUMAN_HTA2.0	TCONS_00017622-XLOC_008312	linc-SRY-2	chrY	  6225259	  6229454	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46926_PI429285431	5.3052926	P	5.227682	P	1.05526884998418	0	lncRNA	51038-3_{6001..9000}	"gi|254939594|ref|NR_003587.2| Homo sapiens myosin XVB pseudogene (MYO15B), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254939594|ref|NR_003587.2| Homo sapiens myosin XVB pseudogene (MYO15B), non-coding RNA"	NA	NA	NA	NA	NA	NR_003587.2	NA	NA	NA	NA	NA	Unknown
CUST_6498_PI429285431	6.615485	P	6.7321815	P	0.922297121307206	0	lncRNA	6440-1_{1..257}	"transcript_id ""ENST00000588904.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588904.1"" | genecode_v17"	chr19	 37746818	 37747074	+	ENSG00000226686.3	ENST00000588904.1	AC012309.5	AC012309.5-006	NA	NA	NA	inter
CUST_25725_PI429285431	5.22743	P	5.5711956	P	0.787981901983911	0	lncRNA	27252-2_{3001..3763}	lnc-SERF1B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SERF1B-1:2	chr5	 69295979	 69296741	+	lnc-SERF1B-1	lnc-SERF1B-1:2	ENSG00000250763.1	RP11-974F13.6	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30"	NA	inter
CUST_16490_PI429285431	2.627838	A	1.8686979	A	1.69248154196764	0	lncRNA	18188-1_{1..327}	lnc-DPP6-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DPP6-2:1	chr7	153120526	153120852	+	lnc-DPP6-2	lnc-DPP6-2:1	XLOC_006298	linc-DPP6-2	NA	NA	NA	inter
CUST_41627_PI429285431	0.89099026	A	0.8847842	A	1.00431097864001	0	lncRNA	43011-1_{1..85}	ENST00000578766 ncrna:miRNA chromosome:GRCh37:15:90393869:90393953:-1 gene:ENSG00000264966 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578766 ncrna:miRNA chromosome:GRCh37:15:90393869:90393953:-1 gene:ENSG00000264966 gene_biotype:miRNA transcript_biotype:miRNA	chr15	 90393869	 90393953	-	ENSG00000264966	ENST00000578766	NA	NA	C15orf38-AP3S2	NA	chr15:90383869-90403953	inner
LNCA_21_P0001586	2.6689558	A	3.158938	P	0.712033882832495	0	lncRNA	TCONS_00001694	NA	NA	NA	NA	XLOC_001053	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001053), lincRNA [TCONS_00001694]"	chr1:158097162-158096916	hs|1q23.1	Agilent_HUMAN_G3V2	TCONS_00001694	TCONS_00001694	chr1	158096916	158097162	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003779	3.7532043	P	4.434633	P	0.623547469924664	0	lncRNA	TCONS_00008601	NA	NA	NA	NA	XLOC_004105	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004105), lincRNA [TCONS_00008601]"	chr4:143837768-143837709	hs|4q31.21	Agilent_HUMAN_G3V2	TCONS_00008601	TCONS_00008601	chr4	143837709	143837768	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005349	4.152321	P	4.378948	P	0.854630671873878	0	lncRNA	ENST00000421380	NA	NA	NA	NA	XLOC_005965	NA	ENST00000421380	THC2725507	NA	"BROAD Institute lincRNA (XLOC_005965), lincRNA [TCONS_00013316]"	chr7:1660316-1660375	hs|7p22.3	Agilent_HUMAN_G3V2	ENST00000421380	ENST00000421380	chr7	  1660316	  1660375	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20135_PI429285431	4.452091	P	1.956471	A	5.63970617064234	0	lncRNA	21782-1_{1..813}	lnc-CCNYL1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCNYL1-2:2	chr2	208463804	208464616	+	lnc-CCNYL1-2	lnc-CCNYL1-2:2	ENSG00000242128.1	AC079767.2	CREB1	NA	chr2:208453804-208470284	inner
LNCA_21_P0012456	4.9492803	P	5.1169596	P	0.890273612227804	0	lncRNA	TCONS_l2_00019488	NA	NA	NA	NA	XLOC_l2_010330	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010330), lincRNA [TCONS_l2_00019488]"	chr3:125590982-125590923	hs|3q21.2	Agilent_HUMAN_G3V2	TCONS_l2_00019488	TCONS_l2_00019488	chr3	125590923	125590982	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010564	0.8921375	A	0.8794118	A	1.00885980082066	0	lncRNA	TCONS_l2_00000660	NA	NA	NA	NA	XLOC_l2_000471	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000471), lincRNA [TCONS_l2_00000660]"	chr1:159949192-159949251	hs|1q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00000660	TCONS_l2_00000660	chr1	159949192	159949251	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004418	5.6267934	P	6.347563	P	0.606773674816676	0	lncRNA	TCONS_00010392	NA	NA	NA	NA	XLOC_004908	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004908), lincRNA [TCONS_00010392]"	chr5:82146912-82146853	hs|5q14.2	Agilent_HUMAN_G3V2	TCONS_00010392	TCONS_00010392	chr5	 82146853	 82146912	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001798	1.0547531	A	1.5467452	A	0.711042598854641	0	lncRNA	ENST00000456248	NA	AK096499	NA	Hs.632942	XLOC_002449	NA	ENST00000456248	THC2519958	NA	"BROAD Institute lincRNA (XLOC_002449), lincRNA [TCONS_00002773]"	chr2:199165142-199165083	hs|2q33.1	Agilent_HUMAN_G3V2	ENST00000456248	ENST00000456248	chr2	199165083	199165142	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23797_PI429285431	1.2386554	A	1.2103527	A	1.01981163299462	0	lncRNA	25362-1_{1..828}	lnc-AMN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AMN-1:1	chr14	103403279	103404106	+	lnc-AMN-1	lnc-AMN-1:1	ENSG00000259515.1	RP11-365N19.2	CDC42BPB	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0,hg19_refFlat_TPCN1:range=chr12:113663051-1137338815'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_CDC42BPB:range=chr14:103400049-1035235105'pad=0,hg19_refFlat_CDC42BPB:range=chr14:103400049-1035235105'pad=0 3'pad=0 strand=- repeatMasking=none,-102.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50chr14:103398716-103413514"	NA	inner
CUST_18452_PI429285431	3.9627047	P	4.133144	P	0.888572070166984	0	lncRNA	20176-1_{1..3000}	lnc-TNR-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TNR-2:3	chr1	175161776	175164775	-	lnc-TNR-2	lnc-TNR-2:3	ENSG00000235750	KIAA0040	KIAA0040	NA	chr1:175151776-175162229	inner
CUST_42213_PI429285431	0.92021525	A	0.9680686	A	0.967374658283225	0	lncRNA	44309-1_{1..79}	ENST00000401245 ncrna:miRNA chromosome:GRCh37:X:145082571:145082649:-1 gene:ENSG00000216064 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000401245 ncrna:miRNA chromosome:GRCh37:X:145082571:145082649:-1 gene:ENSG00000216064 gene_biotype:miRNA transcript_biotype:miRNA	chrX	145082571	145082649	-	ENSG00000216064	ENST00000401245	NA	NA	NA	NA	NA	inter
CUST_37645_PI429285431	1.1719265	A	1.4190855	A	0.84255396617492	0	lncRNA	38738-1_{1..3000}	n346123|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1673|NULL|-1.2830700|-0.2611334	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n346123|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1673|NULL|-1.2830700|-0.2611334	chr9	138354459	138357458	-	NA	NA	NA	NA	KIAA0649	"hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80chr9:138371648-138374246"	NA	inter
CUST_3916_PI429285431	0.9282432	A	0.97943324	A	0.965139882780808	0	lncRNA	3886-1_{1..509}	"transcript_id ""ENST00000534756.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534756.1"" | genecode_v17"	chr11	 38670408	 38670916	+	ENSG00000254562.1	ENST00000534756.1	RP11-64I17.1	RP11-64I17.1-002	NA	NA	NA	inter
LNCA_21_P0006449	0.9277388	A	0.98721296	A	0.959613819967406	0	lncRNA	ENST00000422410	NA	NA	NA	NA	XLOC_008157	NA	ENST00000422410	NA	NA	"BROAD Institute lincRNA (XLOC_008157), lincRNA [TCONS_00017057]"	chrX:48193179-48193120	hs|Xp11.23	Agilent_HUMAN_G3V2	ENST00000422410	ENST00000422410	chrX	 48193120	 48193179	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012623	0.9267374	A	0.984526	A	0.96073563149426	0	lncRNA	TCONS_l2_00020809	NA	NA	NA	NA	XLOC_l2_010880	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010880), lincRNA [TCONS_l2_00020809]"	chr4:148492034-148492093	hs|4q31.22	Agilent_HUMAN_G3V2	TCONS_l2_00020809	TCONS_l2_00020809	chr4	148492034	148492093	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3223_PI429285431	0.91712683	A	1.0843995	A	0.890524575162319	0	lncRNA	3202-1_{1..564}	"transcript_id ""ENST00000521199.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000521199.1"" | genecode_v17"	chr8	 92555152	 92555715	-	ENSG00000253901.1	ENST00000521199.1	RP11-122C21.1	RP11-122C21.1-001	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50"	NA	inter
LNCA_21_P0009612	1.7549821	A	3.869225	P	0.23096675301658	0	lncRNA	XR_110151	XR_110151	XR_110151	NA	Hs.730085	LOC100505797	uncharacterized LOC100505797	NA	THC2673083	NA	"PREDICTED: Homo sapiens hypothetical LOC100505797 (LOC100505797), miscRNA [XR_110151]"	chr18:70548486-70548545	hs|18q22.3	Agilent_HUMAN_G3V2	XR_110151	XR_110151	chr18	 70548486	 70548545	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011252	5.6756277	P	5.6577115	P	1.01249599406969	0	lncRNA	TCONS_l2_00007785	NA	NA	NA	NA	XLOC_l2_004222	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004222), lincRNA [TCONS_l2_00007785]"	chr14:69329176-69329235	hs|14q24.1	Agilent_HUMAN_G3V2	TCONS_l2_00007785	TCONS_l2_00007785	chr14	 69329176	 69329235	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35127_PI429285431	0.91072065	A	0.91594446	A	0.996385678268643	0	lncRNA	36530-1_{1..1828}	n342094|BC042975|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4576|NULL|-1.1727600|-0.5030123	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342094|BC042975|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4576|NULL|-1.1727600|-0.5030123	chr6	100463132	100464959	+	NA	NA	NA	NA	NA	"hg19_refFlat_NIN:range=chr14:51192590-512887745'pad=0,hg19_refFlat_NIN:range=chr14:51192590-512887745'pad=0 3'pad=0 strand=- repeatMasking=none,-64.80"	NA	inter
LNCA_21_P0003854	0.903772	A	0.91366214	A	0.993168121465089	0	lncRNA	ENST00000508664	NA	NA	NA	NA	XLOC_003734	NA	ENST00000508664	NA	NA	"BROAD Institute lincRNA (XLOC_003734), lincRNA [TCONS_00008904]"	chr4:152591561-152591620	hs|4q31.3	Agilent_HUMAN_G3V2	ENST00000508664	ENST00000508664	chr4	152591561	152591620	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006954	7.0049496	P	7.3320518	P	0.79713600571122	0	lncRNA	TCONS_00018414	NA	NA	NA	NA	XLOC_008698	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008698), lincRNA [TCONS_00018414]"	chr10:3916415-3916356	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_00018414	TCONS_00018414	chr10	  3916356	  3916415	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009931	4.2547016	P	4.1471796	P	1.07737612495542	0	lncRNA	THC2713069	NA	NA	NA	NA	XLOC_013448	NA	NA	THC2713069	NA	"BROAD Institute lincRNA (XLOC_013448), lincRNA [TCONS_00028098]"	chr20:005453558-005453499	hs|20p12.3	Agilent_HUMAN_G3V2	THC2713069	THC2713069	chr20	  5453499	  5453558	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32381_PI429285431	1.1218116	A	0.92189	A	1.14863593327829	0	lncRNA	34058-1_{1..1064}	n338972|BC033936|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1400|NULL|2.9279600|-0.1972095	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n338972|BC033936|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1400|NULL|2.9279600|-0.1972095	chr2	144694639	144695702	+	NA	NA	NA	NA	GTDC1	NA	chr2:144703581-144731723	inner
CUST_22072_PI429285431	1.5885785	A	0.9748192	A	1.53024144223608	0	lncRNA	23678-1_{1..701}	lnc-AL391421.1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL391421.1-4:1	chr10	 79136187	 79136887	+	lnc-AL391421.1-4	lnc-AL391421.1-4:1	ENSG00000225652.1	RP11-619F23.2	KCNMA1	NA	chr10:79126187-79146371	inner
CUST_23987_PI429285431	3.4578385	P	3.8678603	P	0.752612001194281	0	lncRNA	25542-1_{1..2177}	lnc-TAF4B-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TAF4B-4:3	chr18	 24768707	 24770883	+	lnc-TAF4B-4	lnc-TAF4B-4:3	ENSG00000260372.2	CHST9-AS1	CHST9	NA	chr18:24758707-24765289	inter
CUST_17251_PI429285431	1.0941026	A	1.3837178	A	0.818120240973082	0	lncRNA	18969-1_{1..832}	lnc-PRICKLE3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PRICKLE3-1:1	chrX	 49012303	 49013134	-	lnc-PRICKLE3-1	lnc-PRICKLE3-1:1	XLOC_008163	linc-GPKOW-1	MAGIX	NA	chrX:49019181-49022503	inter
CUST_20514_PI429285431	4.770892	P	5.278081	P	0.703592007682522	0	lncRNA	22156-1_{1..557}	lnc-PEA15-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-PEA15-1:1	chr1	160232191	160232747	+	lnc-PEA15-1	lnc-PEA15-1:1	ENSG00000228606.1	RP11-574F21.2	DCAF8	NA	chr1:160222191-160232350	inter
CUST_19586_PI429285431	0.90006816	A	0.8992973	A	1.00053446220966	0	lncRNA	21242-1_{1..364}	lnc-ZBTB10-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZBTB10-3:1	chr8	 81039804	 81040167	+	lnc-ZBTB10-3	lnc-ZBTB10-3:1	ENSG00000254205.1	RP11-92K15.1	TPD52	NA	chr8:81029804-81049905	inner
LNCA_21_P0004298	3.6944776	P	4.4308343	P	0.600253285410948	0	lncRNA	TCONS_00010095	NA	NA	NA	NA	XLOC_004554	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004554), lincRNA [TCONS_00010095]"	chr5:133135856-133135915	hs|5q31.1	Agilent_HUMAN_G3V2	TCONS_00010095	TCONS_00010095	chr5	133135856	133135915	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008982	5.2134237	P	5.966411	P	0.593373622254992	0	lncRNA	TCONS_00024487	NA	NA	NA	NA	XLOC_011806	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011806), lincRNA [TCONS_00024487]"	chr16:84971603-84971662	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024487	TCONS_00024487	chr16	 84971603	 84971662	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014500	2.2878368	A	3.368357	P	0.472858291664151	0	lncRNA	XR_110110	XR_110110	XR_110110	NA	NA	LOC100506997	uncharacterized LOC100506997	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506997 (LOC100506997), miscRNA [XR_110110]"	chr13:28252459-28252400	hs|13q12.2	Agilent_HUMAN_G3V2	XR_110110	XR_110110	chr13	 28252400	 28252459	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21422_PI429285431	3.0297647	A	1.7042425	A	2.50623587387966	0	lncRNA	23042-1_{1..2709}	lnc-AF131215.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-AF131215.2.1-1:1	chr8	 10964720	 10967428	-	lnc-AF131215.2.1-1	lnc-AF131215.2.1-1:1	ENSG00000255310.1	AF131215.2	XKR6	"hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0,hg19_refFlat_NDUFA11:range=chr19:5892928-59037195'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60chr8:10954720-10977428"	NA	inner
CUST_6944_PI429285431	1.4554586	A	0.99048334	A	1.38029368328094	0	lncRNA	6893-1_{1..779}	"transcript_id ""ENST00000411554.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411554.1"" | genecode_v17"	chr22	 22390743	 22391521	+	ENSG00000225070.1	ENST00000411554.1	LL22NC03-23C6.13	LL22NC03-23C6.13-001	NA	NA	NA	inter
CUST_27085_PI429285431	1.5409867	A	0.9026583	A	1.55652462376299	0	lncRNA	28617-1_{1..468}	n324195|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000315762|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000315762|0.0183302|-0.2348925	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324195|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000315762|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000315762|0.0183302|-0.2348925	chr7	115998441	115998908	-	NA	NA	NA	NA	NA	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40"	NA	inter
LNCA_21_P0006903	10.376358	P	10.436708	P	0.959031428625061	0	lncRNA	TCONS_00018312	NA	NA	NA	NA	XLOC_008586	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008586), lincRNA [TCONS_00018312]"	chr10:103044967-103045026	hs|10q24.32	Agilent_HUMAN_G3V2	TCONS_00018312	TCONS_00018312	chr10	103044967	103045026	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22432_PI429285431	0.8989008	A	0.88767374	A	1.00781236348467	0	lncRNA	24020-1_{1..1746}	lnc-TMEM65-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM65-2:1	chr8	125183669	125185414	-	lnc-TMEM65-2	lnc-TMEM65-2:1	ENSG00000253868.1	FER1L6-AS2	NA	"hg19_refFlat_FER1L6:range=chr8:124968239-1251320315'pad=0,hg19_refFlat_FER1L6:range=chr8:124968239-1251320315'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.40"	NA	inter
CUST_1800_PI429285431	0.91797996	A	0.9078702	A	1.00703216198263	0	lncRNA	1787-1_{1..575}	"transcript_id ""ENST00000436089.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436089.1"" | genecode_v17"	chr4	 74576019	 74576593	+	ENSG00000228277.1	ENST00000436089.1	AC112518.3	AC112518.3-001	NA	NA	NA	inter
LNCA_21_P0011325	0.93023944	A	1.1814898	A	0.840167939922479	0	lncRNA	TCONS_l2_00008623	NA	NA	NA	NA	XLOC_l2_004647	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004647), lincRNA [TCONS_l2_00008623]"	chr15:47099759-47099818	hs|15q21.1	Agilent_HUMAN_G3V2	TCONS_l2_00008623	TCONS_l2_00008623	chr15	 47099759	 47099818	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1469_PI429285431	1.4786161	A	0.92523676	A	1.46751916065772	0	lncRNA	1457-2_{3001..3518}	"transcript_id ""ENST00000418282.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000418282.1"" | genecode_v17"	chr3	138826027	138826544	+	ENSG00000232416.2	ENST00000418282.1	BPESC1	BPESC1-001	NA	NA	NA	inter
CUST_13542_PI429285431	0.96609646	A	1.1769226	A	0.864042307356311	0	lncRNA	15182-1_{1..437}	lnc-PIGM-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIGM-3:1	chr1	159987401	159987837	-	lnc-PIGM-3	lnc-PIGM-3:1	XLOC_001062	linc-SLAMF9	PIGM	NA	chr1:159997462-159997494	inter
CUST_45773_PI429285431	3.8666344	P	3.3014936	P	1.47953189730047	0	lncRNA	50118-1_{1..1884}	"gi|219842207|ref|NR_026563.1| Homo sapiens solute carrier family 25, member 51 pseudogene (LOC494141), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|219842207|ref|NR_026563.1| Homo sapiens solute carrier family 25, member 51 pseudogene (LOC494141), transcript variant 2, non-coding RNA"	Chr11	 18230832	 18232715	+	494141	NR_026563.1	NA	NA	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60"	NA	inter
CUST_32305_PI429285431	0.9170383	A	0.9193414	A	0.998404886276831	0	lncRNA	33988-1_{1..537}	n338881|AF085985|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1307|NULL|-1.0964000|-0.3026388	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338881|AF085985|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1307|NULL|-1.0964000|-0.3026388	chr2	 73988395	 73988931	-	NA	NA	NA	NA	DUSP11	"hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50chr2:73989325-73998908"	NA	inter
LNCA_21_P0005286	0.9240767	A	0.97338206	A	0.966401527426456	0	lncRNA	ENST00000418764	NA	NA	NA	NA	XLOC_006365	NA	ENST00000418764	NA	NA	"BROAD Institute lincRNA (XLOC_006365), lincRNA [TCONS_00013136]"	chr7:19855848-19853311	hs|7p21.1	Agilent_HUMAN_G3V2	ENST00000418764	ENST00000418764	chr7	 19853311	 19855848	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007807	0.9182635	A	2.3259647	A	0.376911782401617	0	lncRNA	TCONS_00021003	NA	NA	NA	NA	XLOC_010264	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010264), lincRNA [TCONS_00021003]"	chr12:130800815-130800756	hs|12q24.33	Agilent_HUMAN_G3V2	TCONS_00021003	TCONS_00021003	chr12	130800756	130800815	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36481_PI429285431	0.89363277	A	0.8968739	A	0.997755941551059	0	lncRNA	37685-1_{1..1537}	n344985|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_534|NULL|-1.3877500|-0.3922344	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344985|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_534|NULL|-1.3877500|-0.3922344	chr8	134374741	134376277	-	NA	NA	NA	NA	NA	"hg19_refFlat_ST13:range=chr22:41222542-412525445'pad=0,hg19_refFlat_ST13:range=chr22:41222542-412525445'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00"	NA	inter
CUST_41814_PI429285431	0.9055702	A	0.9046709	A	1.00062354158075	0	lncRNA	43408-1_{1..96}	ENST00000390224 ncrna:miRNA chromosome:GRCh37:13:53384179:53384274:1 gene:ENSG00000211579 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390224 ncrna:miRNA chromosome:GRCh37:13:53384179:53384274:1 gene:ENSG00000211579 gene_biotype:miRNA transcript_biotype:miRNA	chr13	 53384179	 53384274	+	ENSG00000211579	ENST00000390224	NA	NA	NA	NA	NA	inter
CUST_36258_PI429285431	1.5107561	A	1.7563298	A	0.843480312283049	0	lncRNA	37499-2_{3001..6000}	n344792|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_341|NULL|-1.3287300|-0.2615506	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n344792|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_341|NULL|-1.3287300|-0.2615506	chr7	 22554433	 22557432	+	NA	NA	NA	NA	NA	"hg19_refFlat_EEF1A1:range=chr6:74227533-742297495'pad=0,hg19_refFlat_EEF1A1:range=chr6:74227533-742297495'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_EEF1A2:range=chr20:62119651-621291165'pad=0,hg19_refFlat_EEF1A2:range=chr20:62119651-621291165'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	inter
CUST_63_PI429201921	4.9426064	P	5.5472546	P	0.657631723507221	0	lncRNA	65-1_{1..1881}	TC04002396.hg.1	 TCONS_l2_00020977-XLOC_l2_011007 // Broad TUCP // linc-FRG1-3 chr4:+:190581255-190582558 // chr4 // 100 // 100 // 0 // --- // 0///TCONS_l2_00021807-XLOC_l2_011007 // Broad TUCP // linc-FRG1-3 chr4:+:190580758-190582640 // chr4 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr4:+:190580758-190582640	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00021807-XLOC_l2_011007	linc-FRG1-3	chr4	190580758	190582640	+	NA	NA	NA	NA	IKZF3	NA	chr17:37921198-37930089	Unknown
CUST_86_PI429201921	1.5754169	A	2.1003222	A	0.695004729255745	0	lncRNA	88-1_{1..2543}	TC08002195.hg.1	TCONS_l2_00028529-XLOC_l2_014416 // Broad TUCP // linc-DEFA1B-1 chr8:-:6844699-6847243 // chr8 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr8:-:6844699-6847243	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00028529-XLOC_l2_014416	linc-DEFA1B-1	chr8	  6844699	  6847243	-	NA	NA	NA	NA	SOCS7	NA	chr17:36556042-36561846	Unknown
LNCA_21_P0006424	0.88849485	A	0.8902304	A	0.998797731715089	0	lncRNA	ENST00000439622	NA	NA	NA	NA	XLOC_007996	NA	ENST00000439622	NA	NA	"BROAD Institute lincRNA (XLOC_007996), lincRNA [TCONS_00016988]"	chrX:57153617-57153676	hs|Xp11.21	Agilent_HUMAN_G3V2	ENST00000439622	ENST00000439622	chrX	 57153617	 57153676	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00322839	6.718159	P	7.5076456	P	0.578549939124934	0	lncRNA	ENST00000436710	XR_108951	XR_108951	NA	NA	LOC100506119	NA	ENST00000436710	THC2610745	NA	"PREDICTED: Homo sapiens hypothetical LOC100506119, transcript variant 1 (LOC100506119), miscRNA [XR_108951]"	chr9:132104081-132104140	hs|9q34.11	Agilent_HUMAN_G3V2	ENST00000436710	ENST00000436710	chr9	132104081	132104140	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007103	0.8879201	A	0.8788743	A	1.00628976880747	0	lncRNA	TCONS_00018937	NA	NA	NA	NA	XLOC_008826	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008826), lincRNA [TCONS_00018937]"	chr10:54735489-54735430	hs|10q21.1	Agilent_HUMAN_G3V2	TCONS_00018937	TCONS_00018937	chr10	 54735430	 54735489	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014080	0.88799465	A	0.8786116	A	1.00652503051169	0	lncRNA	XR_108362	XR_108362	XR_108362	NA	NA	KIRREL-IT1	KIRREL intronic transcript 1 (non-protein coding)	NA	NA	NA	"PREDICTED: Homo sapiens KIRREL intronic transcript 1 (non-protein coding) (KIRREL-IT1), miscRNA [XR_108362]"	chr1:158001537-158001596	hs|1q23.1	Agilent_HUMAN_G3V2	XR_108362	XR_108362	chr1	158001537	158001596	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8656_PI429285431	4.2924247	P	4.0756044	P	1.16216934037634	0	lncRNA	10208-1_{1..3000}	lnc-CNOT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CNOT1-1:1	chr16	 58547116	 58550115	-	lnc-CNOT1-1	lnc-CNOT1-1:1	ENSG00000246134	ENST00000501095	CNOT1	"hg19_refFlat_NDRG4:range=chr16:58498335-585454805'pad=0,hg19_refFlat_NDRG4:range=chr16:58498335-585454805'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.90;hg19_refFlat_NDRG4:range=chr16:58534153-585454805'pad=0,hg19_refFlat_NDRG4:range=chr16:58534153-585454805'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.90;hg19_refFlat_NDRG4:range=chr16:58521683-585454805'pad=0,hg19_refFlat_NDRG4:range=chr16:58521683-585454805'pad=0 3'pad=0 strand=+ repeatMasking=none,-100.90chr16:58553855-58557522"	NA	inter
CUST_26601_PI429285431	1.3997134	A	1.0224384	A	1.29888616693758	0	lncRNA	28104-1_{1..1140}	lnc-TFEC-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TFEC-2:1	chr7	116139174	116140313	-	lnc-TFEC-2	lnc-TFEC-2:1	ENSG00000237813.2	AC002066.1	CAV2	NA	chr7:116139655-116148595	inter
CUST_47649_PI429285431	6.574838	P	5.965939	P	1.52509488088198	0	lncRNA	51634-1_{1..406}	"gi|310124232|ref|XR_109777.1| PREDICTED: Homo sapiens uncharacterized LOC100506790, transcript variant 2 (LOC100506790), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310124232|ref|XR_109777.1| PREDICTED: Homo sapiens uncharacterized LOC100506790, transcript variant 2 (LOC100506790), misc_RNA"	NA	NA	NA	NA	NA	XR_109777.1	NA	NA	NA	NA	NA	Unknown
CUST_21652_PI429285431	1.9786884	A	1.9353343	A	1.03050685370551	0	lncRNA	23264-1_{1..488}	lnc-UBXN4-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-UBXN4-2:4	chr2	136756257	136756744	+	lnc-UBXN4-2	lnc-UBXN4-2:4	ENSG00000231890.1	AC093391.2	NA	NA	NA	inter
LNCA_21_P0005727	0.8928112	A	0.8809024	A	1.00828871388582	0	lncRNA	ENST00000518732	NA	BC015449	NA	Hs.615028	XLOC_006850	NA	ENST00000518732	THC2609191	NA	"BROAD Institute lincRNA (XLOC_006850), lincRNA [TCONS_00014769]"	chr8:77436503-77436562	hs|8q21.11	Agilent_HUMAN_G3V2	ENST00000518732	ENST00000518732	chr8	 77436503	 77436562	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3694_PI429285431	3.960859	P	4.004821	P	0.969987459080015	0	lncRNA	3662-1_{1..550}	"transcript_id ""ENST00000444438.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444438.2"" | genecode_v17"	chr10	 51732595	 51733144	+	ENSG00000178440.5	ENST00000444438.2	LINC00843	LINC00843-001	AGAP6	NA	chr10:51748078-51751813	inter
LNCA_33_P3237704	8.9713335	P	9.175917	P	0.867789178084097	0	lncRNA	XR_132823	XR_132823	XR_132823	100132249	NA	LOC100132249	uncharacterized LOC100132249	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100132249 (LOC100132249), partial miscRNA [XR_132823]"	chr9:45352206-45352147	hs|9p11.2	Agilent_HUMAN_G3V2	XR_132823	XR_132823	chr9	 45352147	 45352206	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49496_PI429285431	1.2385159	A	1.72295	A	0.714777387741707	0	lncRNA	53287-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00024057 range=chr6:16153166-16164118 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024057 range=chr6:16153166-16164118 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 16156166	 16159165	+	NA	NA	NA	NA	GMPR	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-43.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-95.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-56.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00chr6:16161165-16174118"	NA	inter
CUST_8405_PI429285431	0.9186908	A	0.92695695	A	0.994286724622099	0	lncRNA	9982-1_{1..1761}	lnc-JAM3-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-JAM3-3:9	chr11	133909657	133911417	+	lnc-JAM3-3	lnc-JAM3-3:9	ENSG00000204241	RP11-713P17.3	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70"	NA	inter
CUST_49405_PI429285431	1.3004931	A	2.4486966	A	0.451186716896507	0	lncRNA	53214-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00023256 range=chr5:175570064-175598935 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023256 range=chr5:175570064-175598935 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175570064	175573063	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20"	NA	inter
LNCA_21_P0013587	3.5506885	P	5.0354733	P	0.357301827985245	0	lncRNA	TCONS_l2_00028817	NA	NA	NA	NA	XLOC_l2_014835	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014835), lincRNA [TCONS_l2_00028817]"	chr9:70093024-70164886	hs|9q21.11	Agilent_HUMAN_G3V2	TCONS_l2_00028817	TCONS_l2_00028817	chr9	 70093024	 70164886	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15138_PI429285431	2.486455	A	2.6388657	A	0.89974575771649	0	lncRNA	16800-1_{1..366}	lnc-ABCD3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABCD3-2:1	chr1	 94800723	 94801088	+	lnc-ABCD3-2	lnc-ABCD3-2:1	XLOC_000301	linc-ABCD3-1	NA	NA	NA	inter
CUST_19471_PI429285431	4.30846	P	4.755501	P	0.733545825123398	0	lncRNA	21128-2_{3001..4000}	lnc-ANKMY1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ANKMY1-2:1	chr2	241525117	241526116	-	lnc-ANKMY1-2	lnc-ANKMY1-2:1	ENSG00000260942.1	RP11-27M15.1	RNPEPL1	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10chr2:241512117-241518149"	NA	inter
CUST_17119_PI429285431	5.6370354	P	5.585146	P	1.03662162840518	0	lncRNA	18829-1_{1..611}	lnc-KCNH8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNH8-1:1	chr3	 18959143	 18959753	+	lnc-KCNH8-1	lnc-KCNH8-1:1	XLOC_002593	linc-KCNH8-1	NA	NA	NA	inter
CUST_19888_PI429285431	3.2387629	P	2.859274	A	1.30088091393807	0	lncRNA	21544-1_{1..610}	lnc-ACP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACP2-1:1	chr11	 47243241	 47243850	-	lnc-ACP2-1	lnc-ACP2-1:1	ENSG00000256897.1	RP11-17G12.2	DDB2	"hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-59.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90chr11:47233241-47253302"	NA	inner
CUST_18784_PI429285431	8.052533	P	7.3192763	P	1.66238748694429	0	lncRNA	20480-1_{1..995}	lnc-CYP11B2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CYP11B2-1:3	chr8	144099577	144100571	-	lnc-CYP11B2-1	lnc-CYP11B2-1:3	ENSG00000247317	RP11-273G15.2	LY6E	NA	chr8:144089577-144103827	inter
CUST_48544_PI429285431	5.022158	P	3.7176356	P	2.47001944613315	0	lncRNA	52393-1_{1..1251}	hg19_lincRNAsTranscripts_TCONS_l2_00014785 range=chr2:111953948-112125139 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014785 range=chr2:111953948-112125139 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	111953948	111955198	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12364_PI429285431	0.9197484	A	0.93076164	A	0.992395267166033	0	lncRNA	13976-1_{1..716}	lnc-LYPLAL1-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LYPLAL1-3:3	chr1	219097803	219098518	+	lnc-LYPLAL1-3	lnc-LYPLAL1-3:3	XLOC_000565	linc-LYPLAL1	NA	NA	NA	inter
CUST_30943_PI429285431	2.521074	A	2.3122044	A	1.15578223484692	0	lncRNA	32731-1_{1..269}	n337042|DQ123826|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341910_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341910_04|-0.9224730|-0.2627666	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337042|DQ123826|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000341910_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000341910_04|-0.9224730|-0.2627666	chr6	  2826291	  2826559	+	NA	NA	NA	NA	SERPINB1	"hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60chr6:2833733-2837170"	NA	inter
LNCA_21_P0012485	0.8959286	A	1.1218116	A	0.85507151985852	0	lncRNA	TCONS_l2_00019714	NA	NA	NA	NA	XLOC_l2_010511	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010511), lincRNA [TCONS_l2_00019714]"	chr3:197330425-197319997	hs|3q29	Agilent_HUMAN_G3V2	TCONS_l2_00019714	TCONS_l2_00019714	chr3	197319997	197330425	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35717_PI429285431	1.2961111	A	1.0087942	A	1.22036854496375	0	lncRNA	37136-1_{1..2637}	n342883|BC048994|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5389|NULL|3.1150000|-0.2567595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n342883|BC048994|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5389|NULL|3.1150000|-0.2567595	chr12	  8332817	  8335453	+	NA	NA	NA	NA	ZNF705A	NA	chr12:8325150-8332642	inter
CUST_37456_PI429285431	1.125627	A	0.9030874	A	1.16678569195946	0	lncRNA	38555-1_{1..555}	n345906|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1455|NULL|-1.2516100|-0.3334572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345906|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1455|NULL|-1.2516100|-0.3334572	chr12	 68825578	 68826132	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_26368_PI429285431	1.1605871	A	0.90732664	A	1.19189773692945	0	lncRNA	27875-1_{1..464}	lnc-SLC2A4RG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC2A4RG-1:1	chr20	 62376879	 62377342	+	lnc-SLC2A4RG-1	lnc-SLC2A4RG-1:1	ENSG00000229299.1	RP4-583P15.10	ZBTB46	NA	chr20:62375021-62387302	inner
CUST_25811_PI429285431	2.6768107	A	1.2736797	A	2.64474934865504	0	lncRNA	27332-1_{1..1675}	lnc-MUC22-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MUC22-1:1	chr6	 31027185	 31028859	+	lnc-MUC22-1	lnc-MUC22-1:1	ENSG00000228789.2	HCG22	NA	NA	NA	inter
CUST_12189_PI429285431	9.229775	P	9.230364	P	0.99959181963893	0	lncRNA	13789-1_{1..478}	lnc-TMEM116-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM116-1:1	chr12	112332621	112333098	-	lnc-TMEM116-1	lnc-TMEM116-1:1	XLOC_010203	linc-BRAP-1	MAPKAPK5	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0,hg19_refFlat_PACRG:range=chr6:163149268-1637360195'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-37.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-32.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10chr12:112322621-112331228"	NA	inter
CUST_19031_PI429285431	0.89769703	A	1.4003737	A	0.705796083665853	0	lncRNA	20721-1_{1..592}	lnc-NKAIN3-3:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NKAIN3-3:10	chr8	 64098706	 64099297	+	lnc-NKAIN3-3	lnc-NKAIN3-3:10	ENSG00000185728	YTHDF3	YTHDF3	NA	chr8:64088706-64109057	inner
LNCA_21_P0011719	0.8880069	A	0.88268876	A	1.00369305633629	0	lncRNA	TCONS_l2_00012839	NA	NA	NA	NA	XLOC_l2_006902	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006902), lincRNA [TCONS_l2_00012839]"	chr19:9376033-9375974	hs|19p13.2	Agilent_HUMAN_G3V2	TCONS_l2_00012839	TCONS_l2_00012839	chr19	  9375974	  9376033	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29489_PI429285431	6.0994105	P	5.811493	P	1.22087669527568	0	lncRNA	31247-1_{1..384}	n332914|AF086397|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067276|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067276|0.2941050|-0.1561742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332914|AF086397|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000067276|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000067276|0.2941050|-0.1561742	chr14	 35331421	 35331804	-	NA	NA	NA	NA	BAZ1A	NA	chr14:35321421-35344853	inner
LNCA_21_P0006855	3.7108383	P	4.4424744	P	0.602220573324251	0	lncRNA	TCONS_00018160	NA	NA	NA	NA	XLOC_008450	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008450), lincRNA [TCONS_00018160]"	chr10:36315124-36315183	hs|10p11.21	Agilent_HUMAN_G3V2	TCONS_00018160	TCONS_00018160	chr10	 36315124	 36315183	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005815	1.3299625	A	2.8495479	A	0.348786135935	0	lncRNA	TCONS_00014968	NA	NA	NA	NA	XLOC_007050	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007050), lincRNA [TCONS_00014968]"	chr8:33462513-33462454	hs|8p12	Agilent_HUMAN_G3V2	TCONS_00014968	TCONS_00014968	chr8	 33462454	 33462513	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9815_PI429285431	7.3250265	P	7.20547	P	1.08640083986392	0	lncRNA	11332-1_{1..706}	lnc-IQSEC1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IQSEC1-1:2	chr3	 12920404	 12921109	-	lnc-IQSEC1-1	lnc-IQSEC1-1:2	XLOC_003050	linc-RPL32	NA	NA	NA	inter
LNCA_33_P3250268	6.672818	P	6.766388	P	0.937200741010128	0	lncRNA	XR_110303	NA	XR_110303	   728310	Hs.589351	GOLGA6L7P	"golgin A6 family-like 7, pseudogene"	NA	NA	NA	"PREDICTED: Homo sapiens golgin A6 family-like 7 (pseudogene) (GOLGA6L7P), miscRNA [XR_110303]"	chr15:29087527-29087468	hs|15q13.1	Agilent_HUMAN_G3V2	XR_110303	XR_110303	chr15	 29087468	 29087527	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_417_PI429285431	5.5855017	P	4.4675264	P	2.17042158423195	0	lncRNA	409-1_{1..1400}	"transcript_id ""ENST00000417260.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000417260.1"" | genecode_v17"	chr1	143699873	143701272	+	ENSG00000231734.3	ENST00000417260.1	RP6-206I17.2	RP6-206I17.2-002	NA	NA	NA	inter
CUST_34028_PI429285431	1.8901178	A	2.1919317	A	0.81123179342199	0	lncRNA	35561-1_{1..1837}	n340846|BC038757|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3310|NULL|-1.2408500|-0.2920405	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n340846|BC038757|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3310|NULL|-1.2408500|-0.2920405	chr6	 11044923	 11046759	+	NA	NA	NA	NA	ELOVL2	NA	chr6:11034923-11044624	inter
CUST_43139_PI429285431	0.8884842	A	0.8799893	A	1.00590558560316	0	lncRNA	47953-1_{1..296}	ENST00000604052 havana:sense_intronic chromosome:GRCh37:2:28619682:28619977:1 gene:ENSG00000270640 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000604052 havana:sense_intronic chromosome:GRCh37:2:28619682:28619977:1 gene:ENSG00000270640 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr2	 28619682	 28619977	+	ENSG00000270640	ENST00000604052	NA	NA	FOSL2	NA	chr2:28615779-28629977	inner
LNCA_21_P0012905	0.8920752	A	2.0990112	A	0.433187644592655	0	lncRNA	TCONS_l2_00022886	NA	NA	NA	NA	XLOC_l2_012023	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012023), lincRNA [TCONS_l2_00022886]"	chr5:44744441-44744382	hs|5p12	Agilent_HUMAN_G3V2	TCONS_l2_00022886	TCONS_l2_00022886	chr5	 44744382	 44744441	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3919_PI429285431	1.9406163	A	2.0646229	A	0.917635684328286	0	lncRNA	3889-1_{1..454}	"transcript_id ""ENST00000531210.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531210.1"" | genecode_v17"	chr11	 41608285	 41608738	-	ENSG00000255388.1	ENST00000531210.1	RP11-124G5.3	RP11-124G5.3-001	NA	NA	NA	inter
LNCA_21_P0002166	3.3067646	P	4.1372757	P	0.562329991798633	0	lncRNA	TCONS_00003566	NA	NA	NA	NA	XLOC_001341	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001341), lincRNA [TCONS_00003566]"	chr2:10178661-10178720	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_00003566	TCONS_00003566	chr2	 10178661	 10178720	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7585_PI429285431	0.90689766	A	0.90595055	A	1.00065670216069	0	lncRNA	9220-1_{1..1706}	lnc-MCF2L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MCF2L-1:1	chr13	113519574	113521279	+	lnc-MCF2L-1	lnc-MCF2L-1:1	ENSG00000248470	AL356752.1	ATP11A	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50chr13:113509574-113531222"	NA	inner
CUST_51996_PI429285431	0.922854	A	0.9249342	A	0.998559154251396	0	lncRNA	55532-2_{3001..6000}	hg19_lincRNAsTranscripts_TCONS_l2_00017125 range=chr21:10186569-10215575 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017125 range=chr21:10186569-10215575 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 10189569	 10192568	-	NA	NA	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-33.74;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-36.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-41.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-51.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.70;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0,hg19_refFlat_EXOSC9:range=chr4:122722580-1227380115'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80"	NA	inter
CUST_47139_PI429285431	1.6139746	A	3.1219792	P	0.351597178916964	0	lncRNA	51220-1_{1..2046}	"gi|407892492|ref|NR_073194.1| Homo sapiens pregnancy specific beta-1-glycoprotein 7 (gene/pseudogene) (PSG7), transcript variant 1, non-coding, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|407892492|ref|NR_073194.1| Homo sapiens pregnancy specific beta-1-glycoprotein 7 (gene/pseudogene) (PSG7), transcript variant 1, non-coding, non-coding RNA"	NA	NA	NA	NA	NA	NR_073194.1	NA	NA	NA	NA	NA	Unknown
CUST_30844_PI429285431	0.9091393	A	0.91565734	A	0.995492229584504	0	lncRNA	32632-1_{1..242}	n336819|AB231763|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330003|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330003|1.1364500|-0.2832614	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336819|AB231763|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000330003|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000330003|1.1364500|-0.2832614	chr11	 73814456	 73814697	-	NA	NA	NA	NA	C2CD3	NA	chr11:73804456-73827444	inner
LNCA_21_P0006872	0.8917268	A	0.8821297	A	1.00667437785134	0	lncRNA	TCONS_00018200	NA	NA	NA	NA	XLOC_008482	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008482), lincRNA [TCONS_00018200]"	chr10:49651862-49651921	hs|10q11.22	Agilent_HUMAN_G3V2	TCONS_00018200	TCONS_00018200	chr10	 49651862	 49651921	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005575	0.88894284	A	0.88219243	A	1.00468999140226	0	lncRNA	TCONS_00014212	NA	NA	NA	NA	XLOC_006247	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006247), lincRNA [TCONS_00014212]"	chr7:129964332-129964391	hs|7q32.2	Agilent_HUMAN_G3V2	TCONS_00014212	TCONS_00014212	chr7	129964332	129964391	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003853	0.8883592	A	0.8820996	A	1.00434825041681	0	lncRNA	TCONS_00008904	NA	NA	NA	NA	XLOC_003734	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003734), lincRNA [TCONS_00008904]"	chr4:152591414-152591473	hs|4q31.3	Agilent_HUMAN_G3V2	TCONS_00008904	TCONS_00008904	chr4	152591414	152591473	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008955	0.88642275	A	1.042437	A	0.897501185692546	0	lncRNA	TCONS_00024433	NA	NA	NA	NA	XLOC_011750	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011750), lincRNA [TCONS_00024433]"	chr16:63765787-63765846	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024433	TCONS_00024433	chr16	 63765787	 63765846	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004854	2.5950394	A	1.7593362	A	1.78472674033382	0	lncRNA	TCONS_00011736	NA	NA	NA	NA	XLOC_005202	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005202), lincRNA [TCONS_00011736]"	chr6:23404191-23404250	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00011736	TCONS_00011736	chr6	 23404191	 23404250	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001869	0.9324776	A	1.710516	A	0.583159162826686	0	lncRNA	TCONS_00002913	NA	NA	NA	NA	XLOC_001504	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001504), lincRNA [TCONS_00002913]"	chr2:65997165-65997224	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00002913	TCONS_00002913	chr2	 65997165	 65997224	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008746	2.0023556	A	1.2085842	A	1.73360041030695	0	lncRNA	TCONS_00023690	NA	NA	NA	NA	XLOC_011492	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011492), lincRNA [TCONS_00023690]"	chr15:62466595-62466536	hs|15q22.2	Agilent_HUMAN_G3V2	TCONS_00023690	TCONS_00023690	chr15	 62466536	 62466595	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6845_PI429285431	4.994397	P	4.759146	P	1.17711151319797	0	lncRNA	6793-1_{1..843}	"transcript_id ""ENST00000433071.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000433071.1"" | genecode_v17"	chr21	 32931537	 32932379	+	ENSG00000237594.1	ENST00000433071.1	AP000251.2	AP000251.2-001	TIAM1	NA	chr21:32921537-32931290	inter
CUST_49515_PI429285431	0.9151406	A	0.91275865	A	1.00165240564687	0	lncRNA	53307-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00024132 range=chr6:28953518-28959134 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024132 range=chr6:28953518-28959134 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 28953518	 28956517	+	NA	NA	NA	NA	ZNF311	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70chr6:28962594-28969134"	NA	inter
CUST_47923_PI429285431	7.3838587	P	7.512512	P	0.914684874787711	0	lncRNA	51814-1_{1..1313}	"gi|410172165|ref|XR_171650.1| PREDICTED: Homo sapiens uncharacterized LOC730378 (LOC730378), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410172165|ref|XR_171650.1| PREDICTED: Homo sapiens uncharacterized LOC730378 (LOC730378), misc_RNA"	NA	NA	NA	NA	NA	XR_171650.1	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00807046	9.580162	P	9.547903	P	1.02261209869138	0	lncRNA	TCONS_00015178	NA	NA	NA	NA	XLOC_007231	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007231), lincRNA [TCONS_00015178]"	chr8:134421090-134421031	hs|8q24.22	Agilent_HUMAN_G3V2	TCONS_00015178	TCONS_00015178	chr8	134421031	134421090	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003833	0.9076912	A	0.9184966	A	0.99253824560877	0	lncRNA	TCONS_00008794	NA	NA	NA	NA	XLOC_003547	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003547), lincRNA [TCONS_00008794]"	chr4:58024089-58024148	hs|4q12	Agilent_HUMAN_G3V2	TCONS_00008794	TCONS_00008794	chr4	 58024089	 58024148	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47813_PI429285431	7.500999	P	7.6279254	P	0.915780404342993	0	lncRNA	51728-1_{1..712}	"gi|397139867|ref|XR_110949.2| PREDICTED: Homo sapiens uncharacterized LOC100505874, transcript variant 2 (LOC100505874), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139867|ref|XR_110949.2| PREDICTED: Homo sapiens uncharacterized LOC100505874, transcript variant 2 (LOC100505874), misc_RNA"	NA	NA	NA	NA	NA	XR_110949.2	NA	NA	NA	NA	NA	Unknown
CUST_30965_PI429285431	4.5011053	P	4.967053	P	0.723995331701444	0	lncRNA	32753-1_{1..248}	n337092|DQ438897|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343357|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343357|-1.4304200|-0.1653925	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337092|DQ438897|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000343357|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000343357|-1.4304200|-0.1653925	chr9	  4118745	  4118992	-	NA	NA	NA	NA	GLIS3	NA	chr9:4108745-4300035	inner
CUST_1159_PI429285431	0.8988798	A	1.0171964	A	0.921261992703418	0	lncRNA	1148-1_{1..456}	"transcript_id ""ENST00000418620.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000418620.1"" | genecode_v17"	chr2	174745593	174746048	-	ENSG00000224638.1	ENST00000418620.1	AC106900.6	AC106900.6-001	SP3	NA	chr2:174771187-174774156	inter
CUST_19058_PI429285431	7.3768063	P	7.4310164	P	0.963121624190077	0	lncRNA	20749-1_{1..576}	lnc-SMOC1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMOC1-2:2	chr14	 70696735	 70697310	+	lnc-SMOC1-2	lnc-SMOC1-2:2	ENSG00000258422	RP11-486O13.2	NA	NA	NA	inter
LNCA_33_P3392460	1.5393615	A	0.90008074	A	1.55755246480504	0	lncRNA	XR_108956	XR_108956	XR_108956	100128077	Hs.710111	LOC100128077	uncharacterized LOC100128077	NA	THC2545879	NA	"PREDICTED: Homo sapiens hypothetical LOC100128077 (LOC100128077), miscRNA [XR_108956]"	chr9:132253281-132253340	hs|9q34.11	Agilent_HUMAN_G3V2	XR_108956	XR_108956	chr9	132253281	132253340	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20402_PI429285431	0.9033656	A	0.89350533	A	1.00685802765489	0	lncRNA	22043-1_{1..555}	lnc-NDUFA5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NDUFA5-1:1	chr7	123264950	123265504	-	lnc-NDUFA5-1	lnc-NDUFA5-1:1	ENSG00000230442.1	RP11-390E23.3	ASB15	NA	chr7:123254950-123275011	inner
CUST_24663_PI429285431	4.8173532	P	5.579268	P	0.589713121282801	0	lncRNA	26211-1_{1..779}	lnc-SNURF-3:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SNURF-3:12	chr15	 25427344	 25428122	+	lnc-SNURF-3	lnc-SNURF-3:12	ENSG00000224078.4	SNHG14	SNRPN	NA	chr15:25417344-25437855	inter
CUST_36977_PI429285431	1.4487638	A	1.324388	A	1.09003601295104	0	lncRNA	38123-1_{1..1480}	n345439|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_988|NULL|-1.3974600|-0.2622878	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345439|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_988|NULL|-1.3974600|-0.2622878	chr1	 43435919	 43437398	-	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30"	NA	inter
CUST_15308_PI429285431	0.895378	A	0.884614	A	1.00748893913416	0	lncRNA	16986-1_{1..1506}	lnc-PPP1R3G-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PPP1R3G-2:3	chr6	  5042740	  5044245	+	lnc-PPP1R3G-2	lnc-PPP1R3G-2:3	XLOC_005143	linc-PPP1R3G	NA	NA	NA	inter
LNCA_21_P0004003	2.57077	A	1.9249973	A	1.56457704125737	0	lncRNA	ENST00000438117	NA	NA	NA	NA	XLOC_004394	NA	ENST00000438117	NA	NA	"BROAD Institute lincRNA (XLOC_004394), lincRNA [TCONS_00009404]"	chr5:56067942-56068001	hs|5q11.2	Agilent_HUMAN_G3V2	ENST00000438117	ENST00000438117	chr5	 56067942	 56068001	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46877_PI429285431	6.0131207	P	6.431474	P	0.748278225926365	0	lncRNA	51004-2_{3001..6000}	"gi|373838809|ref|NR_046056.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 32, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373838809|ref|NR_046056.1| Homo sapiens calcium channel, voltage-dependent, T type, alpha 1G subunit (CACNA1G), transcript variant 32, non-coding RNA"	Chr17	 48641429	 48644428	+	8913	NR_046056.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004414	3.3453193	P	3.2199614	P	1.090778296521	0	lncRNA	TCONS_00010377	NA	NA	NA	NA	XLOC_004885	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004885), lincRNA [TCONS_00010377]"	chr5:73617123-73617064	hs|5q13.3	Agilent_HUMAN_G3V2	TCONS_00010377	TCONS_00010377	chr5	 73617064	 73617123	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003189	0.89468175	A	1.7894641	A	0.537828327763806	0	lncRNA	TCONS_00006707	NA	NA	NA	NA	XLOC_003322	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003322), lincRNA [TCONS_00006707]"	chr3:168746815-168746756	hs|3q26.2	Agilent_HUMAN_G3V2	TCONS_00006707	TCONS_00006707	chr3	168746756	168746815	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004228	0.8901604	A	0.8776477	A	1.00871086340197	0	lncRNA	TCONS_00009874	NA	NA	NA	NA	XLOC_004294	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004294), lincRNA [TCONS_00009874]"	chr5:10526641-10526700	hs|5p15.2	Agilent_HUMAN_G3V2	TCONS_00009874	TCONS_00009874	chr5	 10526641	 10526700	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7871_PI429285431	2.2435675	A	1.3799442	A	1.81960247237802	0	lncRNA	9493-1_{1..3000}	lnc-TMPRSS11E-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMPRSS11E-1:3	chr4	 68945839	 68948838	+	lnc-TMPRSS11E-1	lnc-TMPRSS11E-1:3	ENSG00000248049	RP11-453E17.1	TMPRSS11F	"hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_SYT14:range=chr1:210187031-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210187031-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_SYT14:range=chr1:210111610-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111610-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80chr4:68935839-68956670"	NA	inner
CUST_32939_PI429285431	2.983519	A	3.3490963	A	0.776158230134858	0	lncRNA	34560-1_{1..2939}	n339611|BX640693|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2055|NULL|-1.2764500|-0.3325078	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n339611|BX640693|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2055|NULL|-1.2764500|-0.3325078	chr3	139397461	139400399	-	NA	NA	NA	NA	NMNAT3	NA	chr3:139387461-139396885	inter
LNCA_21_P0007396	0.8926306	A	0.87940663	A	1.00920829539221	0	lncRNA	TCONS_00019753	NA	NA	NA	NA	XLOC_009547	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009547), lincRNA [TCONS_00019753]"	chr11:109693672-109651727	hs|11q22.3	Agilent_HUMAN_G3V2	TCONS_00019753	TCONS_00019753	chr11	109651727	109693672	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013082	0.89326817	A	0.8807397	A	1.00872188961112	0	lncRNA	AK126413	NA	AK126413	NA	Hs.380358	LOC652990	uncharacterized LOC652990	NA	THC2506072	NA	"BROAD Institute lincRNA (XLOC_l2_013001), lincRNA [TCONS_l2_00024770]"	chr6:44061544-44061485	hs|6p21.1	Agilent_HUMAN_G3V2	AK126413	AK126413	chr6	 44061485	 44061544	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002441	4.1169133	P	4.141332	P	0.98321668275701	0	lncRNA	TCONS_00004256	NA	NA	NA	NA	XLOC_002098	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002098), lincRNA [TCONS_00004256]"	chr2:55378277-55378218	hs|2p16.1	Agilent_HUMAN_G3V2	TCONS_00004256	TCONS_00004256	chr2	 55378218	 55378277	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002813	0.89315045	A	0.8814374	A	1.0081519149639	0	lncRNA	ENST00000473893	NA	NA	NA	NA	XLOC_002942	NA	ENST00000473893	NA	NA	"BROAD Institute lincRNA (XLOC_002942), lincRNA [TCONS_00005674]"	chr3:182085937-182085996	hs|3q26.33	Agilent_HUMAN_G3V2	ENST00000473893	ENST00000473893	chr3	182085937	182085996	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12967_PI429285431	1.0261978	A	1.9653751	A	0.521530199375082	0	lncRNA	14594-1_{1..3000}	lnc-CCHCR1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCHCR1-1:4	chr6	 31142015	 31145014	-	lnc-CCHCR1-1	lnc-CCHCR1-1:4	XLOC_005677	linc-POU5F1-1	POU5F1	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chr6:31132114-31138451"	NA	inter
LNCA_21_P0002563	0.89179695	A	0.8822648	A	1.00662905848222	0	lncRNA	TCONS_00004663	NA	NA	NA	NA	XLOC_001313	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001313), lincRNA [TCONS_00004663]"	chr2:1558178-1558237	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00004663	TCONS_00004663	chr2	  1558178	  1558237	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30593_PI429285431	0.9114041	A	1.25955	A	0.785593065487066	0	lncRNA	32375-1_{1..340}	n335887|X62972|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322568|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322568|2.6463600|-0.0983024	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335887|X62972|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322568|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322568|2.6463600|-0.0983024	chr14	106330426	106330765	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21226_PI429285431	3.4257739	P	2.819978	A	1.5218180719685	0	lncRNA	22852-1_{1..493}	lnc-GS1-211B7.1.1-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GS1-211B7.1.1-1:10	chr8	 30620790	 30621282	+	lnc-GS1-211B7.1.1-1	lnc-GS1-211B7.1.1-1:10	ENSG00000104691.10	UBXN8	UBXN8	NA	chr8:30610790-30624522	inner
CUST_22533_PI429285431	7.0681543	P	7.057039	P	1.00773429518608	0	lncRNA	24121-1_{1..2630}	lnc-HOXB4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-HOXB4-1:1	chr17	 46656992	 46659621	-	lnc-HOXB4-1	lnc-HOXB4-1:1	ENSG00000257178.1	hsa-mir-10a	HOXB3	NA	chr17:46646992-46651810	inter
LNCA_21_P0012829	0.8854715	A	0.8814433	A	1.00279603711344	0	lncRNA	TCONS_l2_00022336	NA	NA	NA	NA	XLOC_l2_011603	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011603), lincRNA [TCONS_l2_00022336]"	chr5:60478904-60478963	hs|5q12.1	Agilent_HUMAN_G3V2	TCONS_l2_00022336	TCONS_l2_00022336	chr5	 60478904	 60478963	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51672_PI429285431	0.89391696	A	0.8842287	A	1.0067379888939	0	lncRNA	55235-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00011429 range=chr17:66121254-66140971 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011429 range=chr17:66121254-66140971 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 66121254	 66124253	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010187	0.93200445	A	0.9806931	A	0.966814724166784	0	lncRNA	ENST00000441465	NA	NA	NA	NA	XLOC_014027	NA	ENST00000441465	NA	NA	"BROAD Institute lincRNA (XLOC_014027), lincRNA [TCONS_00028888]"	chr21:25261890-25261831	hs|21q21.2	Agilent_HUMAN_G3V2	ENST00000441465	ENST00000441465	chr21	 25261831	 25261890	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49339_PI429285431	12.326767	P	12.270099	P	1.0400608951084	0	lncRNA	53151-1_{1..747}	hg19_lincRNAsTranscripts_TCONS_l2_00023418 range=chr5:70671612-70681525 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023418 range=chr5:70671612-70681525 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 70671612	 70672358	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001248	2.5473194	A	3.2027128	P	0.634902339888985	0	lncRNA	ENST00000430542	NA	NA	NA	NA	XLOC_001275	NA	ENST00000430542	NA	NA	"BROAD Institute lincRNA (XLOC_001275), lincRNA [TCONS_00000770]"	chr1:240078801-240078742	hs|1q43	Agilent_HUMAN_G3V2	ENST00000430542	ENST00000430542	chr1	240078742	240078801	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001858	0.912079	A	0.9693613	A	0.961072851626526	0	lncRNA	XR_109987	XR_109987	XR_109987	NA	Hs.608572	LOC100506235	uncharacterized LOC100506235	ENST00000432064	THC2691321	NA	"PREDICTED: Homo sapiens hypothetical LOC100506235, transcript variant 2 (LOC100506235), miscRNA [XR_109987]"	chr2:48134701-48134760	hs|2p16.3	Agilent_HUMAN_G3V2	XR_109987	XR_109987	chr2	 48134701	 48134760	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006554	0.91054547	A	0.92233336	A	0.991862547070898	0	lncRNA	TCONS_00017391	NA	NA	NA	NA	XLOC_008269	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008269), lincRNA [TCONS_00017391]"	chrX:154645020-154644961	hs|Xq28	Agilent_HUMAN_G3V2	TCONS_00017391	TCONS_00017391	chrX	154644961	154645020	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38183_PI429285431	8.457748	P	7.3281393	P	2.18799387575555	0	lncRNA	39250-1_{1..2513}	n381443|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jcf.2||-1.0266200|-0.2217592	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381443|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001jcf.2||-1.0266200|-0.2217592	chr10	 45950065	 45952577	-	NA	NA	NA	NA	8-Mar	NA	chr10:45952817-45962578	inter
CUST_27350_PI429285431	0.8994765	A	1.2723768	A	0.772228497468019	0	lncRNA	28912-1_{1..473}	n324510|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040744|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040744|-1.0198300|-0.3236549	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324510|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040744|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040744|-1.0198300|-0.3236549	chr6	 44600973	 44601445	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14880_PI429285431	5.0673013	P	5.221158	P	0.898844402585862	0	lncRNA	16545-2_{3001..3258}	lnc-AL360004.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AL360004.1-1:1	chr9	132908523	132908780	-	lnc-AL360004.1-1	lnc-AL360004.1-1:1	XLOC_007870	linc-FNBP1-2	GPR107	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10chr9:132895523-132902448"	NA	inter
CUST_20210_PI429285431	10.769016	P	10.846751	P	0.947544103309038	0	lncRNA	21854-1_{1..506}	lnc-SLCO2B1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLCO2B1-2:1	chr11	 74971800	 74972305	+	lnc-SLCO2B1-2	lnc-SLCO2B1-2:1	ENSG00000254429.1	CTD-2562J17.7	ARRB1	NA	chr11:74971166-74982069	inner
CUST_31508_PI429285431	4.805648	P	4.8128324	P	0.995032532275254	0	lncRNA	33269-1_{1..469}	n337992|AL389880|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|378|NULL|-0.8328630|-0.1747115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337992|AL389880|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|378|NULL|-0.8328630|-0.1747115	chr22	 24936028	 24936496	+	NA	NA	NA	NA	C22orf13	NA	chr22:24936406-24946481	inner
CUST_9465_PI429285431	0.8923714	A	0.8865715	A	1.00402827611341	0	lncRNA	10971-1_{1..508}	lnc-BTNL8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTNL8-1:1	chr5	180297962	180298469	+	lnc-BTNL8-1	lnc-BTNL8-1:1	XLOC_004685	linc-BTNL8-1	ZFP62	NA	chr5:180287962-180288286	inter
LNCA_21_P0012743	0.88876057	A	1.0974418	A	0.865327867572961	0	lncRNA	ENST00000508724	NA	NA	NA	NA	XLOC_l2_010833	NA	ENST00000508724	THC2653843	NA	"BROAD Institute lincRNA (XLOC_l2_010833), lincRNA [TCONS_l2_00021707]"	chr4:130710353-130712772	hs|4q28.2	Agilent_HUMAN_G3V2	ENST00000508724	ENST00000508724	chr4	130710353	130712772	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52122_PI429285431	3.6780694	P	3.8765876	P	0.871445169909919	0	lncRNA	55647-1_{1..751}	hg19_lincRNAsTranscripts_TCONS_l2_00018159 range=chr22:20326468-20342070 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018159 range=chr22:20326468-20342070 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 20326468	 20327218	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004424	5.4884453	P	5.9420085	P	0.730237063318532	0	lncRNA	TCONS_00010405	NA	NA	NA	NA	XLOC_004924	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004924), lincRNA [TCONS_00010405]"	chr5:90606345-90606286	hs|5q14.3	Agilent_HUMAN_G3V2	TCONS_00010405	TCONS_00010405	chr5	 90606286	 90606345	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00802137	3.3789818	P	3.533829	P	0.898227501716017	0	lncRNA	TCONS_l2_00001143	NA	NA	NA	NA	XLOC_l2_000864	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000864), lincRNA [TCONS_l2_00001143]"	chr1:36526133-36526074	hs|1p34.3	Agilent_HUMAN_G3V2	TCONS_l2_00001143	TCONS_l2_00001143	chr1	 36526074	 36526133	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34129_PI429285431	3.1225498	A	2.853931	A	1.20465396998477	0	lncRNA	35650-1_{1..1495}	n340965|AK000908|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3431|NULL|3.5412400|-0.1874275	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340965|AK000908|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3431|NULL|3.5412400|-0.1874275	chr11	  8633588	  8635082	-	NA	NA	NA	NA	TRIM66	NA	chr11:8633584-8645083	inner
CUST_49174_PI429285431	0.8998205	A	1.4711083	A	0.673015762840038	0	lncRNA	52998-1_{1..2103}	hg19_lincRNAsTranscripts_TCONS_l2_00021318 range=chr4:142223887-142253771 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021318 range=chr4:142223887-142253771 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	142223887	142225989	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60"	NA	inter
CUST_30292_PI429285431	2.9246254	A	2.8585293	A	1.04688001384155	0	lncRNA	32068-1_{1..574}	n335188|AY429564|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254652|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254652|2.3851800|-0.1431999	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335188|AY429564|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254652|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254652|2.3851800|-0.1431999	chr8	 27288404	 27288977	+	NA	NA	NA	NA	PTK2B	NA	chr8:27278404-27303825	inner
LNCA_21_P0011343	5.119578	P	5.107637	P	1.00831121847479	0	lncRNA	TCONS_l2_00008879	NA	NA	NA	NA	XLOC_l2_004817	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004817), lincRNA [TCONS_l2_00008879]"	chr15:100348473-100349154	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_l2_00008879	TCONS_l2_00008879	chr15	100348473	100349154	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3267033	3.321257	P	3.10784	P	1.15943102817372	0	lncRNA	XR_108782	XR_108782	XR_108782	100130169	Hs.722623	LOC100130169	uncharacterized LOC100130169	NA	THC2490414	NA	"PREDICTED: Homo sapiens hypothetical LOC100130169 (LOC100130169), miscRNA [XR_108782]"	chr7:141116110-141116169	hs|7q34	Agilent_HUMAN_G3V2	XR_108782	XR_108782	chr7	141116110	141116169	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33406_PI429285431	2.9760191	A	2.0291693	A	1.92765891510236	0	lncRNA	34985-1_{1..1731}	n340129|BC037340|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2588|NULL|-0.9792380|-0.3226910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340129|BC037340|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2588|NULL|-0.9792380|-0.3226910	chr4	 77971552	 77973282	-	NA	NA	NA	NA	CCNI	NA	chr4:77969165-77983268	inner
CUST_44687_PI429285431	0.9125638	A	0.90979505	A	1.0019209940056	0	lncRNA	49247-1_{1..3000}	"gi|215820655|ref|NR_002722.2| Homo sapiens zinc finger protein 204, pseudogene (ZNF204P), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|215820655|ref|NR_002722.2| Homo sapiens zinc finger protein 204, pseudogene (ZNF204P), transcript variant 1, non-coding RNA"	Chr6	 27325602	 27328601	-	7754	NR_002722.2	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50"	NA	inter
CUST_37966_PI429285431	4.453435	P	4.2323394	P	1.16561843513009	0	lncRNA	39054-1_{1..853}	n346515|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2065|NULL|-1.5076600|-0.2064741	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346515|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2065|NULL|-1.5076600|-0.2064741	chr22	 25087103	 25087955	-	NA	NA	NA	NA	PIWIL3	NA	chr22:25081822-25102005	inter
CUST_39361_PI429285431	0.93091637	A	1.5644828	A	0.644581000662046	0	lncRNA	40325-1_{1..478}	n386457|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010llg.1||-1.0486900|-0.1923989	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n386457|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010llg.1||-1.0486900|-0.1923989	chr7	127700597	127701074	+	NA	NA	NA	NA	SND1	NA	chr7:127690597-127711075	inner
LNCA_21_P0014641	0.91104496	A	0.9229508	A	0.991781458967123	0	lncRNA	XR_110870	XR_110870	XR_110870	NA	NA	LOC100507190	uncharacterized LOC100507190	ENST00000520256	THC2661432	NA	"PREDICTED: Homo sapiens hypothetical LOC100507190 (LOC100507190), miscRNA [XR_110870]"	chr8:24369197-24369138	hs|8p21.2	Agilent_HUMAN_G3V2	XR_110870	XR_110870	chr8	 24369138	 24369197	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40244_PI429285431	3.9048867	P	2.4960625	A	2.6552067461044	0	lncRNA	41061-2_{3001..3124}	n408151|NR_028130|lncRNA|Homosapiens||RefGeneNoncode|NR_028130||2.2437400|-0.3840758	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408151|NR_028130|lncRNA|Homosapiens||RefGeneNoncode|NR_028130||2.2437400|-0.3840758	chr14	 35182587	 35182710	-	NA	NA	NA	NA	CFL2	NA	chr14:35169587-35184029	inter
LNCA_19_P00318413	0.89649135	A	0.90207946	A	0.996134109179495	0	lncRNA	TCONS_l2_00020648	NA	NA	NA	NA	XLOC_l2_010751	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010751), lincRNA [TCONS_l2_00020648]"	chr4:90608060-90608119	hs|4q22.1	Agilent_HUMAN_G3V2	TCONS_l2_00020648	TCONS_l2_00020648	chr4	 90608060	 90608119	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014576	4.191128	P	4.029156	P	1.11881538672053	0	lncRNA	XR_110361	XR_110361	XR_110361	NA	NA	LOC100506732	uncharacterized LOC100506732	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506732, transcript variant 2 (LOC100506732), miscRNA [XR_110361]"	chr12:57057700-57057759	hs|12q13.3	Agilent_HUMAN_G3V2	XR_110361	XR_110361	chr12	 57057700	 57057759	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15807_PI429285431	2.6397183	A	2.9680736	A	0.796443927748631	0	lncRNA	17497-1_{1..235}	lnc-CISD2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CISD2-5:2	chr4	104954083	104954317	+	lnc-CISD2-5	lnc-CISD2-5:2	XLOC_003630	linc-TET2-4	NA	NA	NA	inter
CUST_25692_PI429285431	0.8952428	A	0.8908484	A	1.00305060963822	0	lncRNA	27221-1_{1..467}	lnc-TDRD3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-TDRD3-4:1	chr13	 60618330	 60618796	+	lnc-TDRD3-4	lnc-TDRD3-4:1	ENSG00000227528.1	DIAPH3-AS1	DIAPH3	"hg19_refFlat_DIAPH3:range=chr13:60348303-607379005'pad=0,hg19_refFlat_DIAPH3:range=chr13:60348303-607379005'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_DIAPH3:range=chr13:60240718-607379005'pad=0,hg19_refFlat_DIAPH3:range=chr13:60240718-607379005'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00chr13:60608330-60628491"	NA	inner
LNCA_21_P0001707	2.6796758	A	3.3315728	P	0.636442904322281	0	lncRNA	TCONS_00002162	NA	NA	NA	NA	XLOC_000403	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000403), lincRNA [TCONS_00002162]"	chr1:150509286-150509345	hs|1q21.3	Agilent_HUMAN_G3V2	TCONS_00002162	TCONS_00002162	chr1	150509286	150509345	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011632	2.6507773	A	3.6381786	P	0.504385497556011	0	lncRNA	ENST00000433051	NA	NA	NA	NA	XLOC_l2_005997	NA	ENST00000433051	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005997), lincRNA [TCONS_l2_00011622]"	chr17:15666940-15665140	hs|17p12	Agilent_HUMAN_G3V2	ENST00000433051	ENST00000433051	chr17	 15665140	 15666940	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33959_PI429285431	11.099965	P	11.005034	P	1.06801432673909	0	lncRNA	35498-1_{1..1438}	n340764|BC041422|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3227|NULL|-0.0137844|-0.1225521	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n340764|BC041422|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3227|NULL|-0.0137844|-0.1225521	chr5	176864889	176866326	-	NA	NA	NA	NA	PRR7	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60chr5:176873796-176883287"	NA	inner
CUST_46775_PI429285431	1.0352268	A	0.8906078	A	1.10543868048907	0	lncRNA	50923-1_{1..3000}	"gi|389885062|ref|NR_051988.1| Homo sapiens F-box and WD repeat domain containing 10 (FBXW10), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|389885062|ref|NR_051988.1| Homo sapiens F-box and WD repeat domain containing 10 (FBXW10), transcript variant 3, non-coding RNA"	Chr17	 18647326	 18650325	+	10517	NR_051988.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0013771	11.606157	P	11.244727	P	1.28469866059092	0	lncRNA	BC014382	NA	BC014382	NA	Hs.720466	XLOC_l2_015561	NA	NA	THC2531465	NA	"BROAD Institute lincRNA (XLOC_l2_015561), lincRNA [TCONS_l2_00030252]"	chrX:73228004-73228063	hs|Xq13.2	Agilent_HUMAN_G3V2	BC014382	BC014382	chrX	 73228004	 73228063	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18925_PI429285431	4.594434	P	5.3079653	P	0.609825633842588	0	lncRNA	20616-1_{1..2323}	lnc-RP11-1070N10.3.1-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RP11-1070N10.3.1-3:4	chr14	 95645836	 95648158	+	lnc-RP11-1070N10.3.1-3	lnc-RP11-1070N10.3.1-3:4	ENSG00000235706	AL356017.3	CLMN	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90chr14:95648276-95656262"	NA	inter
LNCA_21_P0013524	3.4874287	P	3.5615644	P	0.949911029972427	0	lncRNA	TCONS_l2_00028314	NA	NA	NA	NA	XLOC_l2_014585	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014585), lincRNA [TCONS_l2_00028314]"	chr8:92081834-92072924	hs|8q21.3	Agilent_HUMAN_G3V2	TCONS_l2_00028314	TCONS_l2_00028314	chr8	 92072924	 92081834	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25600_PI429285431	6.1551933	P	5.4123573	P	1.67346224182982	0	lncRNA	27129-2_{3001..4216}	lnc-FAM40A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM40A-1:1	chr1	110603962	110605177	+	lnc-FAM40A-1	lnc-FAM40A-1:1	ENSG00000258634.1	RP4-773N10.4	FAM40A	"hg19_refFlat_ALX3:range=chr1:110603355-1106132345'pad=0,hg19_refFlat_ALX3:range=chr1:110603355-1106132345'pad=0 3'pad=0 strand=- repeatMasking=none,-101.40chr1:110590962-110597263"	NA	inner
CUST_31761_PI429285431	1.9260298	A	2.3970008	A	0.721478845924863	0	lncRNA	33501-1_{1..370}	n338300|AX721113|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|694|NULL|-1.2315300|-0.4601455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338300|AX721113|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|694|NULL|-1.2315300|-0.4601455	chr19	  9490499	  9490868	-	NA	NA	NA	NA	ZNF559-ZNF177	"hg19_refFlat_ZNF559-ZNF177:range=chr19:9488988-94912915'pad=0,hg19_refFlat_ZNF559-ZNF177:range=chr19:9488988-94912915'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF559-ZNF177:range=chr19:9488988-94924535'pad=0,hg19_refFlat_ZNF559-ZNF177:range=chr19:9488988-94924535'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF177:range=chr19:9488988-94924535'pad=0,hg19_refFlat_ZNF177:range=chr19:9488988-94924535'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90chr19:9480499-9493293"	NA	inner
CUST_30049_PI429285431	0.8968788	A	0.8903863	A	1.00451039943835	0	lncRNA	31818-1_{1..222}	n334553|U52699|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220266_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220266_05|-1.2387100|-0.2599656	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334553|U52699|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000220266_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000220266_05|-1.2387100|-0.2599656	chr6	  3345149	  3345370	-	NA	NA	NA	NA	SLC22A23	NA	chr6:3335149-3366325	inner
CUST_17410_PI429285431	1.6313912	A	1.4935681	A	1.10024369170387	0	lncRNA	19134-1_{1..265}	lnc-TTC27-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TTC27-1:1	chr2	 33061701	 33061965	+	lnc-TTC27-1	lnc-TTC27-1:1	XLOC_001418	linc-LTBP1	NA	NA	NA	inter
CUST_48607_PI429285431	0.9196826	A	0.89572805	A	1.01674264179557	0	lncRNA	52454-1_{1..340}	hg19_lincRNAsTranscripts_TCONS_l2_00014571 range=chr2:52949825-52951038 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014571 range=chr2:52949825-52951038 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 52949825	 52950164	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011136	1.6146436	A	1.9544909	A	0.790124937085323	0	lncRNA	TCONS_l2_00006771	NA	NA	NA	NA	XLOC_l2_003666	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003666), lincRNA [TCONS_l2_00006771]"	chr13:30742735-30742794	hs|13q12.3	Agilent_HUMAN_G3V2	TCONS_l2_00006771	TCONS_l2_00006771	chr13	 30742735	 30742794	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14670_PI429285431	0.91294664	A	0.894495	A	1.0128718402846	0	lncRNA	16339-1_{1..373}	lnc-XRCC6BP1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-XRCC6BP1-3:1	chr12	 58983497	 58983869	+	lnc-XRCC6BP1-3	lnc-XRCC6BP1-3:1	XLOC_009780	linc-SLC16A7-4	NA	NA	NA	inter
CUST_26767_PI429285431	1.1698476	A	0.91732585	A	1.19128760008419	0	lncRNA	28266-1_{1..919}	n323818|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058023|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058023|-0.8914320|-0.3342445	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323818|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000058023|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000058023|-0.8914320|-0.3342445	chrX	118270801	118271719	-	NA	NA	NA	NA	KIAA1210	NA	chrX:118260801-118284542	inner
CUST_42065_PI429285431	7.0811405	P	4.9874263	P	4.26845568107795	0	lncRNA	43975-1_{1..89}	ENST00000580521 ncrna:miRNA chromosome:GRCh37:2:32048087:32048175:-1 gene:ENSG00000265267 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580521 ncrna:miRNA chromosome:GRCh37:2:32048087:32048175:-1 gene:ENSG00000265267 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 32048087	 32048175	-	ENSG00000265267	ENST00000580521	NA	NA	NA	NA	NA	inter
CUST_26243_PI429285431	4.376422	P	4.4029455	P	0.981783278237319	0	lncRNA	27750-1_{1..653}	lnc-EEA1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EEA1-1:5	chr12	 93532824	 93533476	-	lnc-EEA1-1	lnc-EEA1-1:5	ENSG00000257322.1	RP11-511B23.2	NA	NA	NA	inter
CUST_37473_PI429285431	4.2355375	P	4.56525	P	0.795695033915157	0	lncRNA	38573-1_{1..510}	n345930|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1479|NULL|-1.3469200|-0.2660537	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345930|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1479|NULL|-1.3469200|-0.2660537	chr22	 51192876	 51193385	+	NA	NA	NA	NA	ACR	"hg19_refFlat_SNRPA1:range=chr15:101821929-1018353835'pad=0,hg19_refFlat_SNRPA1:range=chr15:101821929-1018353835'pad=0 3'pad=0 strand=- repeatMasking=none,-91.30chr22:51182876-51183727"	NA	inter
CUST_17879_PI429285431	0.9941705	A	0.89276123	A	1.07282091615403	0	lncRNA	19616-1_{1..772}	lnc-EXT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXT1-1:1	chr8	118753042	118753813	-	lnc-EXT1-1	lnc-EXT1-1:1	XLOC_007191	linc-RAD21-4	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60"	NA	inter
CUST_30855_PI429285431	6.638813	P	6.952319	P	0.80468385936167	0	lncRNA	32643-1_{1..270}	n336851|AY566846|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331938_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331938_03|-1.1423900|-0.2634817	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336851|AY566846|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000331938_03|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000331938_03|-1.1423900|-0.2634817	chr6	   928519	   928788	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42202_PI429285431	0.8986528	A	0.8910767	A	1.00526516487297	0	lncRNA	44283-1_{1..68}	ENST00000362299 ncrna:miRNA chromosome:GRCh37:4:113569030:113569097:-1 gene:ENSG00000199169 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362299 ncrna:miRNA chromosome:GRCh37:4:113569030:113569097:-1 gene:ENSG00000199169 gene_biotype:miRNA transcript_biotype:miRNA	chr4	113569030	113569097	-	ENSG00000199169	ENST00000362299	NA	NA	LARP7	NA	chr4:113559030-113578742	inner
LNCA_21_P0006031	3.637535	P	3.8339536	P	0.872714335099576	0	lncRNA	ENST00000443771	NA	NA	NA	NA	XLOC_007465	NA	ENST00000443771	THC2694833	NA	"BROAD Institute lincRNA (XLOC_007465), lincRNA [TCONS_00015718]"	chr9:96620556-96620615	hs|9q22.32	Agilent_HUMAN_G3V2	ENST00000443771	ENST00000443771	chr9	 96620556	 96620615	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008980	2.4775634	A	1.0920575	A	2.61263556860658	0	lncRNA	TCONS_00024485	NA	NA	NA	NA	XLOC_011804	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011804), lincRNA [TCONS_00024485]"	chr16:84376878-84376937	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024485	TCONS_00024485	chr16	 84376878	 84376937	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004104	0.8883648	A	0.88168937	A	1.00463777683447	0	lncRNA	ENST00000502680	NA	NA	NA	NA	XLOC_004739	NA	ENST00000502680	NA	NA	"BROAD Institute lincRNA (XLOC_004739), lincRNA [TCONS_00009608]"	chr5:15112545-15112486	hs|5p15.1	Agilent_HUMAN_G3V2	ENST00000502680	ENST00000502680	chr5	 15112486	 15112545	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3270237	0.8885033	A	0.87968796	A	1.00612903420202	0	lncRNA	XR_108311	XR_108311	XR_108311	100506128	NA	LOC100506128	uncharacterized LOC100506128	NA	THC2658231	NA	"PREDICTED: Homo sapiens hypothetical LOC100506128, transcript variant 1 (LOC100506128), miscRNA [XR_108311]"	chr1:177362039-177361980	hs|1q25.2	Agilent_HUMAN_G3V2	XR_108311	XR_108311	chr1	177361980	177362039	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31605_PI429285431	6.6568604	P	6.628896	P	1.01957252367578	0	lncRNA	33361-1_{1..1537}	n338115|CR596660|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|503|NULL|-0.7775240|-0.0875950	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338115|CR596660|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|503|NULL|-0.7775240|-0.0875950	chr15	 89902071	 89903607	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010259	1.0874138	A	0.8781297	A	1.15611434977785	0	lncRNA	XR_109692	XR_109692	XR_109692	NA	NA	LOC100506021	uncharacterized LOC100506021	NA	THC2681432	NA	"PREDICTED: Homo sapiens hypothetical LOC100506021 (LOC100506021), miscRNA [XR_109692]"	chr21:44887316-44887375	hs|21q22.3	Agilent_HUMAN_G3V2	XR_109692	XR_109692	chr21	 44887316	 44887375	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005175	7.7514277	P	7.8082232	P	0.961397195435684	0	lncRNA	TCONS_00012773	NA	NA	NA	NA	XLOC_005808	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005808), lincRNA [TCONS_00012773]"	chr6:113667269-113667210	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00012773	TCONS_00012773	chr6	113667210	113667269	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4007_PI429285431	10.053367	P	9.520505	P	1.44679648693041	0	lncRNA	3968-1_{1..548}	"transcript_id ""ENST00000528316.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000528316.1"" | genecode_v17"	chr11	 69902336	 69902883	-	ENSG00000248844.2	ENST00000528316.1	RP11-626H12.3	RP11-626H12.3-002	NA	NA	NA	inter
LNCA_21_P0014372	6.455356	P	6.2331786	P	1.16649279795184	0	lncRNA	XR_109495	XR_109495	XR_109495	NA	NA	LOC100506174	uncharacterized LOC100506174	NA	THC2661012	NA	"PREDICTED: Homo sapiens hypothetical LOC100506174 (LOC100506174), miscRNA [XR_109495]"	chr19:52403650-52403709	hs|19q13.41	Agilent_HUMAN_G3V2	XR_109495	XR_109495	chr19	 52403650	 52403709	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012575	2.992853	P	3.0339336	P	0.971926687192157	0	lncRNA	TCONS_l2_00020442	NA	NA	NA	NA	XLOC_l2_010601	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010601), lincRNA [TCONS_l2_00020442]"	chr4:19535210-19566474	hs|4p15.31	Agilent_HUMAN_G3V2	TCONS_l2_00020442	TCONS_l2_00020442	chr4	 19535210	 19566474	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010563	0.8936246	A	0.88196856	A	1.00811207729658	0	lncRNA	TCONS_l2_00000650	NA	NA	NA	NA	XLOC_l2_000462	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000462), lincRNA [TCONS_l2_00000650]"	chr1:157157449-157157508	hs|1q23.1	Agilent_HUMAN_G3V2	TCONS_l2_00000650	TCONS_l2_00000650	chr1	157157449	157157508	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008074	0.89332557	A	0.8822318	A	1.00771925641706	0	lncRNA	TCONS_00021814	NA	NA	NA	NA	XLOC_010415	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010415), lincRNA [TCONS_00021814]"	chr13:66550883-66550942	hs|13q21.32	Agilent_HUMAN_G3V2	TCONS_00021814	TCONS_00021814	chr13	 66550883	 66550942	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10920_PI429285431	1.5708276	A	0.9334561	A	1.55549256603238	0	lncRNA	12463-2_{3001..6000}	lnc-CRYBA4-1:28	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,lncrnadb20130808,ncbi,"	>lnc-CRYBA4-1:28	chr22	 27067121	 27070120	+	lnc-CRYBA4-1	lnc-CRYBA4-1:28	XLOC_014192	linc-HSCB-11	NA	NA	NA	inter
LNCA_21_P0001333	0.89027435	A	0.8827181	A	1.00525133355333	0	lncRNA	TCONS_00001016	NA	NA	NA	NA	XLOC_000281	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000281), lincRNA [TCONS_00001016]"	chr1:88929700-88929759	hs|1p22.2	Agilent_HUMAN_G3V2	TCONS_00001016	TCONS_00001016	chr1	 88929700	 88929759	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23889_PI429285431	1.195249	A	0.91313666	A	1.21597396514499	0	lncRNA	25446-1_{1..751}	lnc-FAM189A1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM189A1-2:1	chr15	 29269234	 29269984	-	lnc-FAM189A1-2	lnc-FAM189A1-2:1	ENSG00000259277.1	RP13-126C7.1	APBA2	NA	chr15:29259234-29279667	inner
CUST_423_PI429285431	4.413328	P	4.6200724	P	0.866490357528936	0	lncRNA	415-1_{1..405}	"transcript_id ""ENST00000433598.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000433598.1"" | genecode_v17"	chr1	144325552	144325956	-	ENSG00000235398.3	ENST00000433598.1	LINC00623	LINC00623-006	LOC730256	NA	chr1:144339763-144340584	inter
CUST_785_PI429285431	5.5647745	P	5.858953	P	0.815536583387817	0	lncRNA	778-1_{1..571}	"transcript_id ""ENST00000432142.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432142.1"" | genecode_v17"	chr2	 19203707	 19204277	-	ENSG00000236204.1	ENST00000432142.1	AC092594.1	AC092594.1-002	NA	NA	NA	inter
CUST_38838_PI429285431	9.454945	P	7.302666	P	4.44529449839526	0	lncRNA	39829-1_{1..2841}	n384644|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jqp.2||-1.3344600|-0.4217742	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384644|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003jqp.2||-1.3344600|-0.4217742	chr5	 55232480	 55235320	-	NA	NA	NA	NA	IL6ST	NA	chr5:55230923-55245321	inner
LNCA_21_P0014850	4.7543616	P	4.8187714	P	0.956336470492865	0	lncRNA	XR_132722	XR_132722	XR_132722	NA	NA	LOC100507427	uncharacterized LOC100507427	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507427 (LOC100507427), miscRNA [XR_132722]"	NA	NA	Agilent_HUMAN_G3V2	XR_132722	XR_132722	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3783_PI429285431	0.92527497	A	0.94488895	A	0.986496624777813	0	lncRNA	3751-1_{1..369}	"transcript_id ""ENST00000450054.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000450054.1"" | genecode_v17"	chr10	106375860	106376228	+	ENSG00000237761.1	ENST00000450054.1	RP11-127O4.2	RP11-127O4.2-001	NA	NA	NA	inter
CUST_38015_PI429285431	0.92417663	A	1.6503874	A	0.604489518792023	0	lncRNA	39100-1_{1..342}	n377588|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029953||-0.9936950|-0.1067860	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377588|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029953||-0.9936950|-0.1067860	chr6	  1234756	  1235097	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_49400_PI429285431	0.9300023	A	0.9922596	A	0.957764388804971	0	lncRNA	53210-1_{1..1316}	hg19_lincRNAsTranscripts_TCONS_l2_00023251 range=chr5:175343890-175367290 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023251 range=chr5:175343890-175367290 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	175343890	175345205	-	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50"	NA	inter
CUST_20721_PI429285431	5.0305095	P	5.3097663	P	0.82401539699624	0	lncRNA	22356-1_{1..2474}	lnc-AC037487.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AC037487.1-1:1	chr17	 62947013	 62949486	+	lnc-AC037487.1-1	lnc-AC037487.1-1:1	ENSG00000265912.1	RP11-583F2.2	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-39.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80"	NA	inter
CUST_15479_PI429285431	1.459391	A	1.4695076	A	0.993012235990308	0	lncRNA	17167-1_{1..607}	lnc-AL078585.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AL078585.1-3:1	chr6	163814167	163814773	-	lnc-AL078585.1-3	lnc-AL078585.1-3:1	XLOC_005910	linc-PARK2-3	NA	NA	NA	inter
LNCA_21_P0001639	4.043685	P	5.1120677	P	0.476853264856826	0	lncRNA	TCONS_00001856	NA	NA	NA	NA	XLOC_001246	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001246), lincRNA [TCONS_00001856]"	chr1:229916350-229916291	hs|1q42.13	Agilent_HUMAN_G3V2	TCONS_00001856	TCONS_00001856	chr1	229916291	229916350	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40459_PI429285431	5.8804064	P	4.7235603	P	2.22969457131718	0	lncRNA	41231-2_{3001..3911}	n409375|NR_033757|lncRNA|Homosapiens||RefGeneNoncode|NR_033757||0.2305920|-0.2286451	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409375|NR_033757|lncRNA|Homosapiens||RefGeneNoncode|NR_033757||0.2305920|-0.2286451	chr1	 19926470	 19927380	+	NA	NA	NA	NA	C1orf15-NBL1	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40chr1:19923471-19966315"	NA	inter
LNCA_21_P0007113	0.9112003	A	0.92311996	A	0.991771958446413	0	lncRNA	TCONS_00019001	NA	NA	NA	NA	XLOC_008910	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008910), lincRNA [TCONS_00019001]"	chr10:96902804-96902745	hs|10q23.33	Agilent_HUMAN_G3V2	TCONS_00019001	TCONS_00019001	chr10	 96902745	 96902804	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35290_PI429285431	0.9169829	A	0.9208769	A	0.997304524215053	0	lncRNA	36693-1_{1..678}	n342310|M21539|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4802|NULL|-0.9212520|-0.2111220	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n342310|M21539|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4802|NULL|-0.9212520|-0.2111220	chr1	153112593	153113270	-	NA	NA	NA	NA	SPRR2G	NA	chr1:153122058-153123427	inter
CUST_34540_PI429285431	3.7999642	P	4.324663	P	0.69510421580298	0	lncRNA	36001-1_{1..2608}	n341420|S76617|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3890|NULL|8.8026900|-0.0810593	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341420|S76617|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3890|NULL|8.8026900|-0.0810593	chr8	 11351509	 11354116	+	NA	NA	NA	NA	BLK	NA	chr8:11351521-11422108	inner
CUST_12160_PI429285431	1.0707314	A	0.89703876	A	1.12794180868508	0	lncRNA	13758-1_{1..830}	lnc-TGFBRAP1-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TGFBRAP1-7:3	chr2	105372539	105373368	-	lnc-TGFBRAP1-7	lnc-TGFBRAP1-7:3	XLOC_002240	linc-MFSD9-14	NA	NA	NA	inter
LNCA_21_P0009433	6.9491553	P	7.228668	P	0.823869249103622	0	lncRNA	TCONS_00026223	NA	NA	NA	NA	XLOC_012598	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012598), lincRNA [TCONS_00026223]"	chr18:16362-16421	hs|18p11.32	Agilent_HUMAN_G3V2	TCONS_00026223	TCONS_00026223	chr18	    16362	    16421	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010010	1.2617345	A	0.89438754	A	1.28997844587669	0	lncRNA	THC2687906	NA	NA	NA	NA	XLOC_013670	NA	NA	THC2687906	NA	"BROAD Institute lincRNA (XLOC_013670), lincRNA [TCONS_00028327]"	chr20:019190110-019190051	hs|20p11.23	Agilent_HUMAN_G3V2	THC2687906	THC2687906	chr20	 19190051	 19190110	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004341	8.942171	P	8.942171	P	1	0	lncRNA	ENST00000521585	NA	NA	NA	NA	HMP19	HMP19 protein	ENST00000521585	NA	GO:0005794|GO:0016020|GO:0032580|GO:0032585|GO:0031410|GO:0016021|GO:0007212|GO:0050780|GO:0030659|GO:0005768	"BROAD Institute lincRNA (XLOC_004645), lincRNA [TCONS_00010182]"	chr5:173670161-173670220	hs|5q35.2	Agilent_HUMAN_G3V2	ENST00000521585	ENST00000521585	chr5	173670161	173670220	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28389_PI429285431	0.89293224	A	1.1118338	A	0.85921938041399	0	lncRNA	30043-1_{1..776}	n325706|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045197|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045197|-1.3051200|-0.5102733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325706|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045197|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045197|-1.3051200|-0.5102733	chr13	 63220132	 63220907	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15433_PI429285431	0.91406435	A	0.91555685	A	0.998966012766588	0	lncRNA	17120-1_{1..545}	lnc-POLR2F-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLR2F-1:2	chr22	 38422281	 38422825	+	lnc-POLR2F-1	lnc-POLR2F-1:2	XLOC_014237	linc-PICK1	NA	NA	NA	inter
CUST_24120_PI429285431	0.8930849	A	0.88371533	A	1.0065156259642	0	lncRNA	25670-1_{1..1351}	lnc-WNT2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WNT2-1:5	chr7	116730776	116732126	-	lnc-WNT2-1	lnc-WNT2-1:5	ENSG00000226367.1	ST7-AS2	ST7	NA	chr7:116720776-116740834	inner
LNCA_21_P0004083	5.6064653	P	5.519074	P	1.06244731340187	0	lncRNA	ENST00000514793	NA	NA	NA	NA	XLOC_004677	NA	ENST00000514793	THC2718227	NA	"BROAD Institute lincRNA (XLOC_004677), lincRNA [TCONS_00009560]"	chr5:179091374-179091433	hs|5q35.3	Agilent_HUMAN_G3V2	ENST00000514793	ENST00000514793	chr5	179091374	179091433	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33384_PI429285431	5.390002	P	3.287416	P	4.29478526545537	0	lncRNA	34962-1_{1..2251}	n340102|AK055625|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2561|NULL|-1.0814300|-0.3929459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340102|AK055625|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2561|NULL|-1.0814300|-0.3929459	chr10	 93041764	 93044014	+	NA	NA	NA	NA	PCGF5	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-64.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20chr10:93031764-93044021"	NA	inner
CUST_45005_PI429285431	0.89621675	A	1.0757613	A	0.88298170421831	0	lncRNA	49509-1_{1..1561}	"gi|397139222|ref|XR_108845.2| PREDICTED: Homo sapiens uncharacterized LOC613126 (LOC613126), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139222|ref|XR_108845.2| PREDICTED: Homo sapiens uncharacterized LOC613126 (LOC613126), misc_RNA"	NA	NA	NA	NA	NA	XR_108845.2	NA	NA	NA	"hg19_refFlat_CYP51A1:range=chr7:91742979-917636785'pad=0,hg19_refFlat_CYP51A1:range=chr7:91742979-917636785'pad=0 3'pad=0 strand=- repeatMasking=none,-103.80"	NA	Unknown
LNCA_21_P0014733	2.1885014	A	2.313799	A	0.916814902568272	0	lncRNA	ENST00000447529	XR_108822	XR_108822	NA	Hs.604334	LOC100507000	NA	ENST00000447529	THC2632177	NA	"PREDICTED: Homo sapiens hypothetical LOC100507000 (LOC100507000), miscRNA [XR_108822]"	chr7:137011641-137011700	hs|7q33	Agilent_HUMAN_G3V2	ENST00000447529	ENST00000447529	chr7	137011641	137011700	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009255	2.2053611	A	2.521074	A	0.803453870222324	0	lncRNA	TCONS_00025429	NA	NA	NA	NA	XLOC_012244	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012244), lincRNA [TCONS_00025429]"	chr17:48870692-48870751	hs|17q21.33	Agilent_HUMAN_G3V2	TCONS_00025429	TCONS_00025429	chr17	 48870692	 48870751	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21421_PI429285431	2.2631552	A	2.1602094	A	1.07396412355815	0	lncRNA	23041-1_{1..679}	lnc-RP11-429E11.3.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-429E11.3.1-1:2	chr20	 60330048	 60330726	-	lnc-RP11-429E11.3.1-1	lnc-RP11-429E11.3.1-1:2	ENSG00000225106.1	RP11-429E11.2	CDH4	NA	chr20:60320048-60340081	inner
CUST_11937_PI429285431	3.1612005	P	3.6145642	P	0.730338049572141	0	lncRNA	13517-1_{1..380}	lnc-C1orf133-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf133-1:2	chr1	210465723	210466102	-	lnc-C1orf133-1	lnc-C1orf133-1:2	XLOC_001188	linc-IRF6	NA	NA	NA	inter
LNCA_21_P0005287	0.8934183	A	0.8798318	A	1.00946192782715	0	lncRNA	ENST00000439839	NA	NA	NA	NA	XLOC_006377	NA	ENST00000439839	NA	NA	"BROAD Institute lincRNA (XLOC_006377), lincRNA [TCONS_00013142]"	chr7:24236343-24236284	hs|7p15.3	Agilent_HUMAN_G3V2	ENST00000439839	ENST00000439839	chr7	 24236284	 24236343	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15153_PI429285431	4.4022455	P	4.500875	P	0.93391975501565	0	lncRNA	16814-1_{1..532}	lnc-CALM1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CALM1-2:1	chr14	 90959906	 90960437	+	lnc-CALM1-2	lnc-CALM1-2:1	XLOC_010903	linc-C14orf159-2	NA	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20"	NA	inter
LNCA_21_P0014260	0.89410824	A	0.8812876	A	1.00892619343892	0	lncRNA	XR_109037	XR_109037	XR_109037	NA	NA	LOC100507109	uncharacterized LOC100507109	NA	THC2690690	NA	"PREDICTED: Homo sapiens hypothetical LOC100507109 (LOC100507109), miscRNA [XR_109037]"	chr11:33801086-33801145	hs|11p13	Agilent_HUMAN_G3V2	XR_109037	XR_109037	chr11	 33801086	 33801145	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16032_PI429285431	1.0603137	A	1.7407402	A	0.623980781445051	0	lncRNA	17729-1_{1..223}	lnc-TCOF1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCOF1-1:1	chr5	149821613	149821835	+	lnc-TCOF1-1	lnc-TCOF1-1:1	XLOC_004603	linc-NDST1-2	RPS14	NA	chr5:149823792-149829319	inter
CUST_5378_PI429285431	9.8824	P	9.838554	P	1.03085827429958	0	lncRNA	5315-1_{1..3000}	"transcript_id ""ENST00000562570.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562570.1"" | genecode_v17"	chr16	  1025761	  1028760	-	ENSG00000260807.2	ENST00000562570.1	RP11-161M6.2	RP11-161M6.2-004	LMF1	NA	chr16:1015761-1031318	inter
LNCA_21_P0008911	3.647392	P	3.8665676	P	0.859056187146607	0	lncRNA	TCONS_00024348	NA	NA	NA	NA	XLOC_011670	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011670), lincRNA [TCONS_00024348]"	chr16:22447316-22447375	hs|16p12.2	Agilent_HUMAN_G3V2	TCONS_00024348	TCONS_00024348	chr16	 22447316	 22447375	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49113_PI429285431	1.1877512	A	1.6983209	A	0.701945194838668	0	lncRNA	52937-1_{1..571}	hg19_lincRNAsTranscripts_TCONS_l2_00021593 range=chr4:57423882-57462711 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021593 range=chr4:57423882-57462711 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	 57423882	 57424452	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_8217_PI429285431	0.9787631	A	2.6381211	A	0.316579995404827	0	lncRNA	9809-1_{1..3000}	lnc-TMEM132D-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM132D-3:6	chr12	130646507	130649506	-	lnc-TMEM132D-3	lnc-TMEM132D-3:6	ENSG00000250208	ENST00000505807	FZD10	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10chr12:130647004-130650285"	NA	inter
CUST_13223_PI429285431	5.197659	P	5.396633	P	0.871169892073602	0	lncRNA	14851-1_{1..576}	lnc-NDUFA4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NDUFA4-1:1	chr7	 10677469	 10678044	-	lnc-NDUFA4-1	lnc-NDUFA4-1:1	XLOC_006353	linc-ICA1	NA	NA	NA	inter
CUST_26972_PI429285431	8.365114	P	8.235371	P	1.09409878242797	0	lncRNA	28498-1_{1..446}	n324059|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052799|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052799|-1.1187900|-0.2810208	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324059|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052799|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052799|-1.1187900|-0.2810208	chr9	 81835313	 81835758	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_21169_PI429285431	4.3725038	P	4.6374717	P	0.832217251359754	0	lncRNA	22793-1_{1..731}	lnc-SZT2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SZT2-2:1	chr1	 43854377	 43855107	+	lnc-SZT2-2	lnc-SZT2-2:1	ENSG00000229431.1	RP1-92O14.6	SZT2	"hg19_refFlat_MED8:range=chr1:43850713-438554355'pad=0,hg19_refFlat_MED8:range=chr1:43850713-438554355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_MED8:range=chr1:43850121-438554355'pad=0,hg19_refFlat_MED8:range=chr1:43850121-438554355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60chr1:43855556-43864826"	NA	inner
LNCA_21_P0012567	1.7211055	A	2.579005	A	0.551755304669456	0	lncRNA	THC2678769	NA	NA	NA	NA	XLOC_l2_010555	NA	NA	THC2678769	NA	"BROAD Institute lincRNA (XLOC_l2_010555), lincRNA [TCONS_l2_00020387]"	chr4:006235616-006235675	hs|4p16.1	Agilent_HUMAN_G3V2	THC2678769	THC2678769	chr4	  6235616	  6235675	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28439_PI429285431	0.92481756	A	0.9163216	A	1.00590632467849	0	lncRNA	30098-1_{1..376}	n325763|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044468|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044468|-1.1545200|-0.3578841	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325763|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000044468|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000044468|-1.1545200|-0.3578841	chr13	 35169660	 35170035	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24531_PI429285431	3.4464903	P	3.4856806	P	0.973200994730097	0	lncRNA	26081-2_{3001..4265}	lnc-MYH13-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MYH13-2:1	chr17	 10066121	 10067385	-	lnc-MYH13-2	lnc-MYH13-2:1	ENSG00000263807.1	CTB-104H12.5	GAS7	"hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.60;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0,hg19_refFlat_CENPL:range=chr1:173769586-1737804375'pad=0 3'pad=0 strand=- repeatMasking=none,-24.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0,hg19_refFlat_C11orf88:range=chr11:111385510-1114075525'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-54.00;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20chr17:10053121-10077385"	NA	inner
CUST_35390_PI429285431	2.339589	A	3.6040673	P	0.416249862289226	0	lncRNA	36798-1_{1..1862}	n342446|BC036597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4939|NULL|-0.8586670|-0.1219151	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n342446|BC036597|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4939|NULL|-0.8586670|-0.1219151	chr2	130887193	130889054	+	NA	NA	NA	NA	POTEF	"hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-55.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70chr2:130877193-130886795"	NA	inter
LNCA_33_P3246011	0.9039396	A	0.9132457	A	0.993570262817635	0	lncRNA	XR_132562	XR_132562	XR_132562	100128657	NA	LOC100128657	coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene	NA	NA	NA	"PREDICTED: Homo sapiens mitochondrial intermembrane space import and assembly protein 40-like (LOC100128657), miscRNA [XR_132562]"	chr9:110859600-110859541	hs|9q31.2	Agilent_HUMAN_G3V2	XR_132562	XR_132562	chr9	110859541	110859600	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_357_PI429201921	5.1578627	P	5.2490087	P	0.938776738782475	0	lncRNA	230-2_{3001..6000}	TC01004919.hg.1	TCONS_l2_00002268-XLOC_l2_000552 // Broad TUCP // linc-RGS1 chr1:+:192498708-192507232 // chr1 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:192498708-192507232	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00002268-XLOC_l2_000552	linc-RGS1	chr1	192498708	192507232	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36773_PI429285431	3.1878552	P	3.521866	P	0.793327904324512	0	lncRNA	37945-1_{1..765}	n345252|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_801|NULL|-1.2903100|-0.3029453	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345252|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_801|NULL|-1.2903100|-0.3029453	chr14	 35433119	 35433883	+	NA	NA	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80"	NA	inter
CUST_24486_PI429285431	4.4889245	P	4.326347	P	1.11928505278225	0	lncRNA	26038-1_{1..542}	lnc-EXOSC6-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EXOSC6-2:2	chr16	 70207031	 70207572	-	lnc-EXOSC6-2	lnc-EXOSC6-2:2	ENSG00000247228.2	RP11-296I10.3	CLEC18C	NA	chr16:70207928-70217322	inter
CUST_23856_PI429285431	0.8985217	A	0.89078534	A	1.00537683971699	0	lncRNA	25419-1_{1..391}	lnc-NPPC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPPC-1:1	chr2	232880331	232880721	-	lnc-NPPC-1	lnc-NPPC-1:1	ENSG00000227033.1	AC105461.1	DIS3L2	"hg19_refFlat_DIS3L2:range=chr2:232879638-2332013405'pad=0,hg19_refFlat_DIS3L2:range=chr2:232879638-2332013405'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_DIS3L2:range=chr2:232879638-2329954775'pad=0,hg19_refFlat_DIS3L2:range=chr2:232879638-2329954775'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_DIS3L2:range=chr2:232879638-2332082855'pad=0,hg19_refFlat_DIS3L2:range=chr2:232879638-2332082855'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50chr2:232870331-232890430"	NA	inner
LNCA_23_P412427	1.2303069	A	2.531266	A	0.405856296237777	0	lncRNA	XR_109071	XR_109071	XR_109071	   171391	Hs.711081	NS3BP	NS3BP	NA	THC2626747	NA	"PREDICTED: Homo sapiens NS3BP (NS3BP), miscRNA [XR_109071]"	chr11:780489-780548	hs|11p15.5	Agilent_HUMAN_G3V2	XR_109071	XR_109071	chr11	   780489	   780548	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30607_PI429285431	1.0614027	A	1.8651872	A	0.572844510227009	0	lncRNA	32389-1_{1..451}	n335923|X66187|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322817|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322817|1.4825700|-0.2011990	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335923|X66187|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322817|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322817|1.4825700|-0.2011990	chr11	 59857833	 59858283	+	NA	NA	NA	NA	MS4A2	NA	chr11:59847833-59865940	inner
LNCA_21_P0014642	1.5590738	A	0.88709795	A	1.59325352207358	0	lncRNA	XR_110872	XR_110872	XR_110872	NA	Hs.571481	LOC100507222	uncharacterized LOC100507222	ENST00000517964	THC2721178	NA	"PREDICTED: Homo sapiens hypothetical LOC100507222 (LOC100507222), miscRNA [XR_110872]"	chr8:25544619-25544678	hs|8p21.2	Agilent_HUMAN_G3V2	XR_110872	XR_110872	chr8	 25544619	 25544678	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002740	3.8123615	P	4.4563756	P	0.639929952616033	0	lncRNA	ENST00000523129	XR_110001	XR_110001	NA	Hs.634259	XLOC_002643	NA	ENST00000523129	THC2620569	NA	"PREDICTED: Homo sapiens hypothetical LOC100506637 (LOC100506637), miscRNA [XR_110001]"	chr3:48886549-48886608	hs|3p21.31	Agilent_HUMAN_G3V2	ENST00000523129	ENST00000523129	chr3	 48886549	 48886608	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8910_PI429285431	1.0446718	A	1.6201624	A	0.67105801393469	0	lncRNA	10445-1_{1..473}	lnc-FBN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-FBN2-1:1	chr5	127339336	127339808	-	lnc-FBN2-1	lnc-FBN2-1:1	ENSG00000245937	CTC-228N24.3	NA	NA	NA	inter
LNCA_21_P0008516	2.9975066	P	4.1158524	P	0.460621673321827	0	lncRNA	TCONS_00023013	NA	NA	NA	NA	XLOC_010868	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010868), lincRNA [TCONS_00023013]"	chr14:71764804-71764863	hs|14q24.2	Agilent_HUMAN_G3V2	TCONS_00023013	TCONS_00023013	chr14	 71764804	 71764863	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14995_PI429285431	0.89630026	A	0.89334977	A	1.00204721651686	0	lncRNA	16658-1_{1..3000}	lnc-PDE4D-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PDE4D-1:1	chr5	 59817878	 59820877	-	lnc-PDE4D-1	lnc-PDE4D-1:1	XLOC_004839	linc-PDE4D	NA	"hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20"	NA	inter
CUST_36151_PI429285431	6.147027	P	6.4912996	P	0.787705033607199	0	lncRNA	37426-1_{1..1069}	n344713|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_262|NULL|-1.4157100|-0.2787406	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344713|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_262|NULL|-1.4157100|-0.2787406	chr14	 62023007	 62024075	-	NA	NA	NA	NA	PRKCH	NA	chr14:62013007-62017698	inter
CUST_29929_PI429285431	10.031589	P	9.334439	P	1.62129880081154	0	lncRNA	31693-1_{1..214}	n334095|M55091|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195767|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195767|-1.2394600|-0.4641472	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334095|M55091|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195767|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195767|-1.2394600|-0.4641472	chr19	 10396160	 10396373	+	NA	NA	NA	NA	ICAM5	NA	chr19:10400655-10406374	inner
LNCA_21_P0001297	2.122423	A	1.4136698	A	1.6343910398704	0	lncRNA	TCONS_00000942	NA	NA	NA	NA	XLOC_000194	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000194), lincRNA [TCONS_00000942]"	chr1:53656978-53657037	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_00000942	TCONS_00000942	chr1	 53656978	 53657037	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24190_PI429285431	5.8701878	P	5.6104145	P	1.19729055183059	0	lncRNA	25741-1_{1..374}	lnc-C12orf48-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C12orf48-1:1	chr12	102468384	102468757	+	lnc-C12orf48-1	lnc-C12orf48-1:1	ENSG00000257222.1	RP11-554E23.4	NUP37	"hg19_refFlat_NUP37:range=chr12:102468132-1025122965'pad=0,hg19_refFlat_NUP37:range=chr12:102468132-1025122965'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30chr12:102467970-102478598"	NA	inner
LNCA_19_P00801597	0.89408237	A	0.88052464	A	1.00944179749519	0	lncRNA	AK056484	NA	AK056484	NA	Hs.587432	LOC441204	uncharacterized LOC441204	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013314), lincRNA [TCONS_l2_00025735]"	chr7:26537285-26537344	hs|7p15.2	Agilent_HUMAN_G3V2	AK056484	AK056484	chr7	 26537285	 26537344	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010814	1.3046372	A	0.8829933	A	1.33945294483819	0	lncRNA	THC2700693	NA	NA	NA	NA	XLOC_l2_001543	NA	NA	THC2700693	NA	"BROAD Institute lincRNA (XLOC_l2_001543), lincRNA [TCONS_l2_00002966]"	chr10:035264223-035264282	hs|10p11.21	Agilent_HUMAN_G3V2	THC2700693	THC2700693	chr10	 35264223	 35264282	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010143	0.8895797	A	0.88281655	A	1.0046988635524	0	lncRNA	ENST00000450653	NA	NA	NA	NA	XLOC_013873	NA	ENST00000450653	NA	NA	"BROAD Institute lincRNA (XLOC_013873), lincRNA [TCONS_00028801]"	chr21:20419282-20419341	hs|21q21.1	Agilent_HUMAN_G3V2	ENST00000450653	ENST00000450653	chr21	 20419282	 20419341	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011939	3.5094194	P	3.1353776	P	1.29597851399043	0	lncRNA	ENST00000431244	NA	NA	NA	NA	XLOC_l2_008151	NA	ENST00000431244	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008151), lincRNA [TCONS_l2_00014727]"	chr2:98088602-98088543	hs|2q11.2	Agilent_HUMAN_G3V2	ENST00000431244	ENST00000431244	chr2	 98088543	 98088602	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011727	8.841431	P	8.802446	P	1.02739075732833	0	lncRNA	AK128109	NA	AK128109	NA	Hs.676703	XLOC_l2_006954	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006954), lincRNA [TCONS_l2_00012909]"	chr19:19853163-19853104	hs|19p13.11	Agilent_HUMAN_G3V2	AK128109	AK128109	chr19	 19853104	 19853163	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009105	0.93782216	A	0.9857848	A	0.967301378505459	0	lncRNA	THC2682267	NA	NA	NA	NA	XLOC_011734	NA	NA	THC2682267	NA	"BROAD Institute lincRNA (XLOC_011734), lincRNA [TCONS_00024854]"	chr16:056170612-056170671	hs|16q12.2	Agilent_HUMAN_G3V2	THC2682267	THC2682267	chr16	 56170612	 56170671	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20040_PI429285431	0.9572586	A	1.1344985	A	0.884393360861642	0	lncRNA	21691-1_{1..552}	lnc-TMEM55A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM55A-1:1	chr8	 92056849	 92057400	-	lnc-TMEM55A-1	lnc-TMEM55A-1:1	ENSG00000254219.1	GS1-251I9.2	TMEM55A	NA	chr8:92046849-92053203	inter
LNCA_21_P0007996	0.9298835	A	0.9920147	A	0.957848106683206	0	lncRNA	TCONS_00021656	NA	NA	NA	NA	XLOC_010622	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010622), lincRNA [TCONS_00021656]"	chr13:53269209-53269150	hs|13q14.3	Agilent_HUMAN_G3V2	TCONS_00021656	TCONS_00021656	chr13	 53269150	 53269209	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012628	0.92906296	A	0.99036777	A	0.958396928730359	0	lncRNA	TCONS_l2_00020845	NA	NA	NA	NA	XLOC_l2_010908	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010908), lincRNA [TCONS_l2_00020845]"	chr4:156938322-156938381	hs|4q32.1	Agilent_HUMAN_G3V2	TCONS_l2_00020845	TCONS_l2_00020845	chr4	156938322	156938381	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51551_PI429285431	1.0307832	A	1.3902878	A	0.779432179120132	0	lncRNA	55116-1_{1..2686}	hg19_lincRNAsTranscripts_TCONS_l2_00011108 range=chr17:15663681-15669096 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011108 range=chr17:15663681-15669096 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 15663681	 15666366	-	NA	NA	NA	NA	NA	"hg19_refFlat_CDRT15L2:range=chr17:20483057-204840425'pad=0,hg19_refFlat_CDRT15L2:range=chr17:20483057-204840425'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.10;hg19_refFlat_CDRT15:range=chr17:14139173-141401505'pad=0,hg19_refFlat_CDRT15:range=chr17:14139173-141401505'pad=0 3'pad=0 strand=- repeatMasking=none,-96.60;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30"	NA	inter
LNCA_21_P0014284	5.2129397	P	5.3680067	P	0.898090663811668	0	lncRNA	ENST00000551357	XR_109131	XR_109131	NA	Hs.641707	LOC100506452	NA	ENST00000551357	THC2682363	NA	"PREDICTED: Homo sapiens hypothetical LOC100506452 (LOC100506452), miscRNA [XR_109131]"	chr12:113918227-113918286	hs|12q24.13	Agilent_HUMAN_G3V2	ENST00000551357	ENST00000551357	chr12	113918227	113918286	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010645	3.1517985	P	3.9339228	P	0.581509916770983	0	lncRNA	TCONS_l2_00001476	NA	NA	NA	NA	XLOC_l2_001076	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001076), lincRNA [TCONS_l2_00001476]"	chr1:120149353-120149294	hs|1p12	Agilent_HUMAN_G3V2	TCONS_l2_00001476	TCONS_l2_00001476	chr1	120149294	120149353	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014421	7.448856	P	7.3123236	P	1.09925980429438	0	lncRNA	ENST00000480319	XR_109703	XR_109703	NA	NA	LOC100506613	NA	ENST00000480319	THC2477246	NA	"PREDICTED: Homo sapiens hypothetical LOC100506613 (LOC100506613), miscRNA [XR_109703]"	chr22:21844414-21844355	hs|22q11.21	Agilent_HUMAN_G3V2	ENST00000480319	ENST00000480319	chr22	 21844355	 21844414	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21584_PI429285431	0.91551644	A	0.9144232	A	1.00075806340861	0	lncRNA	23198-1_{1..576}	lnc-HMBS-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMBS-1:6	chr11	118940944	118941519	+	lnc-HMBS-1	lnc-HMBS-1:6	ENSG00000160695.8	VPS11	VPS11	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20chr11:118938493-118951494"	NA	inner
LNCA_21_P0005513	1.5503639	A	0.8987273	A	1.57094927757452	0	lncRNA	TCONS_00013887	NA	NA	NA	NA	XLOC_006525	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006525), lincRNA [TCONS_00013887]"	chr7:93891499-93891440	hs|7q21.3	Agilent_HUMAN_G3V2	TCONS_00013887	TCONS_00013887	chr7	 93891440	 93891499	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004328	0.8940538	A	0.8969804	A	0.99797349160784	0	lncRNA	TCONS_00010164	NA	NA	NA	NA	XLOC_004627	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004627), lincRNA [TCONS_00010164]"	chr5:168896210-168926516	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00010164	TCONS_00010164	chr5	168896210	168926516	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009825	1.3071318	A	1.4048057	A	0.934538561711306	0	lncRNA	ENST00000449270	NA	NA	NA	NA	XLOC_013457	NA	ENST00000449270	THC2613461	NA	"BROAD Institute lincRNA (XLOC_013457), lincRNA [TCONS_00027899]"	chr20:9987589-9987648	hs|20p12.2	Agilent_HUMAN_G3V2	ENST00000449270	ENST00000449270	chr20	  9987589	  9987648	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00322333	6.316082	P	7.2170606	P	0.535523355141993	0	lncRNA	XR_111691	XR_111691	XR_111691	NA	NA	LOC100508196	uncharacterized LOC100508196	NA	THC2608833	NA	"PREDICTED: Homo sapiens hypothetical LOC100508196 (LOC100508196), miscRNA [XR_111691]"	chr17:38682884-38682943	hs|17q21.2	Agilent_HUMAN_G3V2	XR_111691	XR_111691	chr17	 38682884	 38682943	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45221_PI429285431	1.321518	A	1.8573091	A	0.689780332802993	0	lncRNA	49681-1_{1..3000}	"gi|402169578|ref|NR_073119.1| Homo sapiens ubiquitin-conjugating enzyme E2W (putative) (UBE2W), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|402169578|ref|NR_073119.1| Homo sapiens ubiquitin-conjugating enzyme E2W (putative) (UBE2W), transcript variant 4, non-coding RNA"	Chr8	 74698455	 74701454	-	55284	NR_073119.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40"	NA	inter
CUST_44495_PI429285431	3.6217291	P	3.7659009	P	0.904898698699353	0	lncRNA	49095-1_{1..2875}	"gi|385719180|ref|NR_047669.1| Homo sapiens family with sequence similarity 173, member B (FAM173B), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385719180|ref|NR_047669.1| Homo sapiens family with sequence similarity 173, member B (FAM173B), transcript variant 5, non-coding RNA"	Chr5	 10225619	 10228493	-	134145	NR_047669.1	NA	NA	NA	NA	NA	inter
CUST_5231_PI429285431	1.2670159	A	1.706746	A	0.737272525001028	0	lncRNA	5172-1_{1..353}	"transcript_id ""ENST00000562658.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000562658.1"" | genecode_v17"	chr15	 72110737	 72111089	+	ENSG00000260037.1	ENST00000562658.1	CTD-2524L6.3	CTD-2524L6.3-003	MYO9A	NA	chr15:72118351-72125677	inter
LNCA_21_P0005072	2.123332	A	2.2368004	A	0.924363116287748	0	lncRNA	TCONS_00012338	NA	NA	NA	NA	XLOC_005888	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005888), lincRNA [TCONS_00012338]"	chr6:156130252-156130193	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_00012338	TCONS_00012338	chr6	156130193	156130252	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18396_PI429285431	0.90203005	A	0.9297292	A	0.980983550426166	0	lncRNA	20121-1_{1..844}	lnc-MYC-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYC-2:10	chr8	128902835	128903678	+	lnc-MYC-2	lnc-MYC-2:10	ENSG00000249859	PVT1	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70"	NA	inter
CUST_4502_PI429285431	0.90393376	A	0.8884088	A	1.01081919094836	0	lncRNA	4451-1_{1..406}	"transcript_id ""ENST00000536342.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000536342.1"" | genecode_v17"	chr12	128366162	128366567	+	ENSG00000256597.1	ENST00000536342.1	RP11-749H20.4	RP11-749H20.4-001	NA	NA	NA	inter
CUST_12648_PI429285431	0.91648054	A	0.91165566	A	1.00334995055306	0	lncRNA	14264-1_{1..3000}	lnc-FTSJD2-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FTSJD2-1:6	chr6	 37503308	 37506307	+	lnc-FTSJD2-1	lnc-FTSJD2-1:6	XLOC_005278	linc-ZFAND3-2	NA	"hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40"	NA	inter
LNCA_21_P0006775	5.8741565	P	5.9256234	P	0.964954685644397	0	lncRNA	ENST00000432108	NA	NA	NA	NA	XLOC_008877	NA	ENST00000432108	THC2713279	NA	"BROAD Institute lincRNA (XLOC_008877), lincRNA [TCONS_00018011]"	chr10:85672588-85672529	hs|10q23.1	Agilent_HUMAN_G3V2	ENST00000432108	ENST00000432108	chr10	 85672529	 85672588	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42837_PI429285431	7.570109	P	8.27593	P	0.613093493868511	0	lncRNA	45876-1_{1..129}	ENST00000408133 ncrna:snoRNA chromosome:GRCh37:14:70270920:70271048:-1 gene:ENSG00000221060 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408133 ncrna:snoRNA chromosome:GRCh37:14:70270920:70271048:-1 gene:ENSG00000221060 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 70270920	 70271048	-	ENSG00000221060	ENST00000408133	NA	NA	SLC10A1	NA	chr14:70260920-70264006	inter
CUST_4687_PI429285431	0.9073293	A	0.89140624	A	1.01109815679638	0	lncRNA	4634-1_{1..1320}	"transcript_id ""ENST00000415294.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000415294.2"" | genecode_v17"	chr13	106359825	106361144	+	ENSG00000226620.2	ENST00000415294.2	LINC00343	LINC00343-002	NA	NA	NA	inter
CUST_4230_PI429285431	6.0332327	P	5.792535	P	1.18156393798506	0	lncRNA	4189-1_{1..579}	"transcript_id ""ENST00000548764.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000548764.1"" | genecode_v17"	chr12	 43040385	 43040963	+	ENSG00000257164.1	ENST00000548764.1	RP11-25I15.2	RP11-25I15.2-002	NA	NA	NA	inter
LNCA_33_P3416804	5.1122375	P	5.3139744	P	0.869503114326677	0	lncRNA	ENST00000391394	XR_111273	XR_111273	NA	Hs.524331	NA	NA	ENST00000391394	THC2475282	NA	"PREDICTED: Homo sapiens hypothetical LOC100509445 (LOC100509445), miscRNA [XR_111273]"	chr12:31264853-31264794	hs|12p11.21	Agilent_HUMAN_G3V2	ENST00000391394	ENST00000391394	chr12	 31264794	 31264853	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11899_PI429285431	0.89990145	A	0.89886105	A	1.00072141041807	0	lncRNA	13481-1_{1..311}	lnc-CDH6-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH6-2:10	chr5	 29176999	 29177309	+	lnc-CDH6-2	lnc-CDH6-2:10	XLOC_004325	linc-CDH6-3	NA	NA	NA	inter
CUST_26822_PI429285431	0.9047965	A	0.90271866	A	1.00144128659426	0	lncRNA	28335-1_{1..786}	n323891|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060661|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060661|-1.2791700|-0.3599606	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323891|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000060661|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000060661|-1.2791700|-0.3599606	chrX	 39145449	 39146234	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_36881_PI429285431	4.550605	P	4.6508293	P	0.932887941456033	0	lncRNA	38039-1_{1..3000}	n345351|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_900|NULL|-1.3911200|-0.3635501	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345351|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_900|NULL|-1.3911200|-0.3635501	chr18	  4424357	  4427356	-	NA	NA	NA	NA	DLGAP1	NA	chr18:4414357-4455266	inner
CUST_4380_PI429285431	2.4639084	A	3.0064769	A	0.686547526487518	0	lncRNA	4331-4_{9001..10626}	"transcript_id ""ENST00000504409.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000504409.3"" | genecode_v17"	chr12	 92869227	 92870852	+	ENSG00000205056.8	ENST00000504409.3	RP11-693J15.5	RP11-693J15.5-001	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-41.91;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-34.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.56;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.21;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70"	NA	inter
CUST_6535_PI429285431	5.07595	P	5.192821	P	0.9221855723587	0	lncRNA	6478-1_{1..241}	"transcript_id ""ENST00000588710.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000588710.1"" | genecode_v17"	chr19	 45040251	 45040491	-	ENSG00000267614.1	ENST00000588710.1	AC138472.6	AC138472.6-001	CEACAM20	NA	chr19:45030251-45033548	inter
CUST_33360_PI429285431	0.9183248	A	0.9688416	A	0.965590374665127	0	lncRNA	34940-1_{1..1358}	n340078|BC031013|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2533|NULL|-1.0940500|-0.4522461	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340078|BC031013|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2533|NULL|-1.0940500|-0.4522461	chr4	 68297039	 68298396	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009777	3.9364152	P	4.6279964	P	0.619174859627123	0	lncRNA	ENST00000444227	XR_132661	XR_132661	NA	Hs.664152	XLOC_013429	NA	ENST00000444227	THC2480319	NA	"PREDICTED: Homo sapiens hepatocellular carcinoma-associated antigen HCA25a (LOC100506634), miscRNA [XR_132661]"	chr19:58917813-58917754	hs|19q13.43	Agilent_HUMAN_G3V2	ENST00000444227	ENST00000444227	chr19	 58917754	 58917813	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007858	0.93890774	A	0.9869412	A	0.967253896119841	0	lncRNA	TCONS_00021243	NA	NA	NA	NA	XLOC_009935	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009935), lincRNA [TCONS_00021243]"	chr12:126583410-126583469	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00021243	TCONS_00021243	chr12	126583410	126583469	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007988	0.92979944	A	0.9919088	A	0.957862607017927	0	lncRNA	BC040923	NA	BC040923	NA	Hs.618449	XLOC_010572	NA	ENST00000414161	THC2638381	NA	"BROAD Institute lincRNA (XLOC_010572), lincRNA [TCONS_00021639]"	chr13:39107629-39107570	hs|13q13.3	Agilent_HUMAN_G3V2	BC040923	BC040923	chr13	 39107570	 39107629	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014835	1.773865	A	2.5959196	A	0.565635824057197	0	lncRNA	XR_132693	XR_132693	XR_132693	NA	NA	LOC100652877	uncharacterized LOC100652877	NA	THC2776432	NA	"PREDICTED: Homo sapiens hypothetical LOC100652877 (LOC100652877), miscRNA [XR_132693]"	chr4:144471210-144471151	hs|4q31.21	Agilent_HUMAN_G3V2	XR_132693	XR_132693	chr4	144471151	144471210	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1234_PI429285431	1.0996625	A	1.4051409	A	0.809173848702308	0	lncRNA	1226-1_{1..503}	"transcript_id ""ENST00000431727.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000431727.2"" | genecode_v17"	chr2	216395170	216395672	-	ENSG00000234938.2	ENST00000431727.2	AC012668.1	AC012668.1-001	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.40;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40"	NA	inter
CUST_5553_PI429285431	0.91971505	A	1.3327732	A	0.751029691475709	0	lncRNA	5483-1_{1..532}	"transcript_id ""ENST00000564331.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000564331.1"" | genecode_v17"	chr16	 52656754	 52657285	+	ENSG00000261261.2	ENST00000564331.1	RP11-297L17.4	RP11-297L17.4-002	NA	NA	NA	inter
LNCA_21_P0006134	0.91812944	A	0.93483955	A	0.988484254050042	0	lncRNA	TCONS_00015939	NA	NA	NA	NA	XLOC_007307	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007307), lincRNA [TCONS_00015939]"	chr9:27246089-27246148	hs|9p21.2	Agilent_HUMAN_G3V2	TCONS_00015939	TCONS_00015939	chr9	 27246089	 27246148	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36745_PI429285431	0.9200026	A	0.94100696	A	0.985546358493827	0	lncRNA	37918-1_{1..1406}	n345225|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_774|NULL|-1.3389100|-0.2906799	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345225|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_774|NULL|-1.3389100|-0.2906799	chr13	 48863194	 48864599	-	NA	NA	NA	NA	RB1	NA	chr13:48877883-48881266	inter
CUST_29865_PI429285431	7.0708337	P	5.537569	P	2.89440077627296	0	lncRNA	31628-1_{1..287}	n333837|L23311|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192534|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192534|-1.2778600|-0.3836691	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333837|L23311|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192534|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192534|-1.2778600|-0.3836691	chr13	 26979087	 26979373	+	NA	NA	NA	NA	CDK8	NA	chr13:26969087-26978569	inter
CUST_42551_PI429285431	0.89847505	A	0.89358646	A	1.00339425987346	0	lncRNA	45362-1_{1..77}	ENST00000516489 ncrna:snoRNA chromosome:GRCh37:2:84085947:84086023:1 gene:ENSG00000252298 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516489 ncrna:snoRNA chromosome:GRCh37:2:84085947:84086023:1 gene:ENSG00000252298 gene_biotype:snoRNA transcript_biotype:snoRNA	chr2	 84085947	 84086023	+	ENSG00000252298	ENST00000516489	NA	NA	NA	NA	NA	inter
LNCA_21_P0010746	2.0462086	A	1.3206278	A	1.65356619481356	0	lncRNA	ENST00000442726	NA	AK091229	NA	Hs.586508	XLOC_l2_000693	NA	ENST00000442726	THC2508071	NA	"BROAD Institute lincRNA (XLOC_l2_000693), lincRNA [TCONS_l2_00002344]"	chr1:238701546-238701605	hs|1q43	Agilent_HUMAN_G3V2	ENST00000442726	ENST00000442726	chr1	238701546	238701605	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010255	0.91519505	A	1.7962743	A	0.542961101449373	0	lncRNA	TCONS_00029036	NA	NA	NA	NA	XLOC_013955	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013955), lincRNA [TCONS_00029036]"	chr21:44237918-44237977	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029036	TCONS_00029036	chr21	 44237918	 44237977	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013054	0.8889312	A	0.88090825	A	1.00557657670969	0	lncRNA	TCONS_l2_00024561	NA	NA	NA	NA	XLOC_l2_012844	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012844), lincRNA [TCONS_l2_00024561]"	chr6:1502750-1502691	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_l2_00024561	TCONS_l2_00024561	chr6	  1502691	  1502750	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00316670	8.923775	P	8.841431	P	1.05873681277058	0	lncRNA	ENST00000503532	NA	NA	NA	NA	XLOC_003462	NA	ENST00000503532	NA	NA	"BROAD Institute lincRNA (XLOC_003462), lincRNA [TCONS_00007480]"	chr4:13977451-13977510	hs|4p15.33	Agilent_HUMAN_G3V2	ENST00000503532	ENST00000503532	chr4	 13977451	 13977510	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42636_PI429285431	9.012783	P	9.501508	P	0.712654637130247	0	lncRNA	45512-1_{1..132}	ENST00000516918 ncrna:snoRNA chromosome:GRCh37:12:8750105:8750236:1 gene:ENSG00000252727 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516918 ncrna:snoRNA chromosome:GRCh37:12:8750105:8750236:1 gene:ENSG00000252727 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	  8750105	  8750236	+	ENSG00000252727	ENST00000516918	NA	NA	AICDA	NA	chr12:8754762-8760236	inter
LNCA_33_P3374273	0.8909749	A	0.878213	A	1.00888511537568	0	lncRNA	ENST00000452354	XR_109924	XR_109924	NA	Hs.434127	NA	NA	ENST00000452354	THC2503345	NA	"PREDICTED: Homo sapiens hypothetical LOC150577 (LOC150577), miscRNA [XR_109924]"	chr2:100867622-100867681	hs|2q11.2	Agilent_HUMAN_G3V2	ENST00000452354	ENST00000452354	chr2	100867622	100867681	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38345_PI429285431	0.9100599	A	1.6617736	A	0.593897679172233	0	lncRNA	39391-1_{1..3000}	n382094|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vnl.2||-1.0184300|-0.3283965	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382094|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001vnl.2||-1.0184300|-0.3283965	chr13	 99053669	 99056668	+	NA	NA	NA	NA	FARP1	NA	chr13:99043669-99069746	inner
CUST_11263_PI429285431	6.8918715	P	6.4858637	P	1.32501418077862	0	lncRNA	12822-1_{1..844}	lnc-SIX2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SIX2-2:1	chr2	 45168849	 45169692	-	lnc-SIX2-2	lnc-SIX2-2:1	XLOC_002076	linc-PREPL-2	SIX3	NA	chr2:45169037-45173216	inter
CUST_19568_PI429285431	3.0823	A	3.4267285	A	0.787619917504115	0	lncRNA	21224-1_{1..263}	lnc-POTEM-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POTEM-6:1	chr14	 19887445	 19887707	-	lnc-POTEM-6	lnc-POTEM-6:1	ENSG00000257898.1	RP11-496I2.3	NA	NA	NA	inter
LNCA_21_P0014911	3.776609	P	5.5781307	P	0.286871847575132	0	lncRNA	XR_133001	XR_133001	XR_133001	NA	NA	LOC100653221	uncharacterized LOC100653221	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100653221, transcript variant 1 (LOC100653221), miscRNA [XR_133001]"	chr12:53204825-53207427	hs|12q13.13	Agilent_HUMAN_G3V2	XR_133001	XR_133001	chr12	 53204825	 53207427	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008319	0.8910702	A	0.88321424	A	1.00546018931677	0	lncRNA	TCONS_00022470	NA	NA	NA	NA	XLOC_010799	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010799), lincRNA [TCONS_00022470]"	chr14:36759126-36759185	hs|14q13.3	Agilent_HUMAN_G3V2	TCONS_00022470	TCONS_00022470	chr14	 36759126	 36759185	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36270_PI429285431	0.91781783	A	0.92294997	A	0.996448991425247	0	lncRNA	37507-2_{3001..5153}	n344801|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_350|NULL|-1.3781500|-0.3266059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344801|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_350|NULL|-1.3781500|-0.3266059	chr13	 56155489	 56157641	+	NA	NA	NA	NA	NA	"hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20"	NA	inter
CUST_15545_PI429285431	0.8914912	A	1.1156639	A	0.856085799362285	0	lncRNA	17232-1_{1..3000}	lnc-TFRC-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TFRC-1:1	chr3	195727626	195730625	-	lnc-TFRC-1	lnc-TFRC-1:1	XLOC_003397	linc-TNK2-1	NA	NA	NA	inter
CUST_4126_PI429285431	2.6602888	A	3.1842556	P	0.695456989865365	0	lncRNA	4086-1_{1..3000}	"transcript_id ""ENST00000513405.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000513405.1"" | genecode_v17"	chr11	134605490	134608489	+	ENSG00000251226.1	ENST00000513405.1	RP11-469N6.1	RP11-469N6.1-001	NA	NA	NA	inter
CUST_25948_PI429285431	0.91576	A	1.5997889	A	0.62242464918456	0	lncRNA	27467-1_{1..1501}	lnc-KDM4C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KDM4C-1:1	chr9	  6723527	  6725027	+	lnc-KDM4C-1	lnc-KDM4C-1:1	ENSG00000225489.1	RP11-390F4.3	KDM4C	"hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-23.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_GJC3:range=chr7:99521168-995272435'pad=0,hg19_refFlat_GJC3:range=chr7:99521168-995272435'pad=0 3'pad=0 strand=- repeatMasking=none,-61.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90chr9:6713527-6733630"	NA	inner
LNCA_21_P0006940	2.3016155	A	2.8473485	A	0.685043259411414	0	lncRNA	TCONS_00018395	NA	NA	NA	NA	XLOC_008678	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008678), lincRNA [TCONS_00018395]"	chr10:134827514-134827573	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_00018395	TCONS_00018395	chr10	134827514	134827573	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20973_PI429285431	1.7117577	A	2.2359521	A	0.695347283017112	0	lncRNA	22603-1_{1..570}	lnc-GNRHR2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNRHR2-1:2	chr1	145508147	145508716	-	lnc-GNRHR2-1	lnc-GNRHR2-1:2	ENSG00000234222.1	RP11-315I20.1	LIX1L	"hg19_refFlat_RBM8A:range=chr1:145507667-1455092115'pad=0,hg19_refFlat_RBM8A:range=chr1:145507667-1455092115'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90chr1:145498147-145499091"	NA	inner
CUST_46865_PI429285431	7.1609488	P	7.6610756	P	0.707044635551314	0	lncRNA	50995-1_{1..570}	"gi|283046787|ref|NR_033201.1| Homo sapiens HOXB cluster antisense RNA 3 (HOXB-AS3), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|283046787|ref|NR_033201.1| Homo sapiens HOXB cluster antisense RNA 3 (HOXB-AS3), transcript variant 1, non-coding RNA"	Chr17	 46667823	 46668392	+	404266	NR_033201.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0013345	2.8160775	A	3.1918144	P	0.770711647932109	0	lncRNA	TCONS_l2_00026845	NA	NA	NA	NA	XLOC_l2_013963	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013963), lincRNA [TCONS_l2_00026845]"	chr7:112587268-112587209	hs|7q31.1	Agilent_HUMAN_G3V2	TCONS_l2_00026845	TCONS_l2_00026845	chr7	112587209	112587268	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13403_PI429285431	0.92652345	A	1.034334	A	0.927995329785696	0	lncRNA	15040-1_{1..3000}	lnc-HPCAL1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HPCAL1-1:5	chr2	 10595549	 10598548	+	lnc-HPCAL1-1	lnc-HPCAL1-1:5	XLOC_001342	linc-ATP6V1C2-4	ODC1	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_EFCAB5:range=chr17:28270646-284007085'pad=0,hg19_refFlat_EFCAB5:range=chr17:28270646-284007085'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.20;hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507003765'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.30;hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0,hg19_refFlat_CD55:range=chr1:207495111-2075330145'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0,hg19_refFlat_ARGFX:range=chr3:121289561-1213054475'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50chr2:10585549-10588453"	NA	inter
LNCA_21_P0009404	4.9817476	P	4.7179365	P	1.20064620997804	0	lncRNA	TCONS_00026052	NA	NA	NA	NA	XLOC_012440	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012440), lincRNA [TCONS_00026052]"	chr17:32496160-32496101	hs|17q12	Agilent_HUMAN_G3V2	TCONS_00026052	TCONS_00026052	chr17	 32496101	 32496160	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33754_PI429285431	2.2753077	A	2.567354	A	0.816742779196619	0	lncRNA	35309-1_{1..1538}	n340534|AK130230|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2996|NULL|1.3671500|-0.1994460	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340534|AK130230|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2996|NULL|1.3671500|-0.1994460	chr5	 80528124	 80529661	-	NA	NA	NA	NA	RASGRF2	NA	chr5:80518124-80521953	inter
CUST_41981_PI429285431	0.9456155	A	1.7304533	A	0.580417208944037	0	lncRNA	43805-1_{1..80}	ENST00000583746 ncrna:miRNA chromosome:GRCh37:2:225875178:225875257:-1 gene:ENSG00000263828 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583746 ncrna:miRNA chromosome:GRCh37:2:225875178:225875257:-1 gene:ENSG00000263828 gene_biotype:miRNA transcript_biotype:miRNA	chr2	225875178	225875257	-	ENSG00000263828	ENST00000583746	NA	NA	DOCK10	NA	chr2:225865178-225885257	inner
CUST_42063_PI429285431	0.90447325	A	0.9035665	A	1.00062870876053	0	lncRNA	43973-1_{1..95}	ENST00000385069 ncrna:miRNA chromosome:GRCh37:8:100548864:100548958:-1 gene:ENSG00000207804 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385069 ncrna:miRNA chromosome:GRCh37:8:100548864:100548958:-1 gene:ENSG00000207804 gene_biotype:miRNA transcript_biotype:miRNA	chr8	100548864	100548958	-	ENSG00000207804	ENST00000385069	NA	NA	VPS13B	NA	chr8:100538864-100558958	inner
CUST_27084_PI429285431	0.91550636	A	1.9618598	A	0.484190460227235	0	lncRNA	28616-1_{1..626}	n324194|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316598|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316598|-0.0205513|-0.2983400	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324194|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000316598|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000316598|-0.0205513|-0.2983400	chr7	116000774	116001399	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90"	NA	inter
CUST_31220_PI429285431	0.912568	A	0.91647387	A	0.997296318769226	0	lncRNA	33011-1_{1..303}	n337666|BC015977|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|48|NULL|-1.0426000|-0.2471296	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337666|BC015977|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|48|NULL|-1.0426000|-0.2471296	chrX	 46185713	 46186015	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42565_PI429285431	0.8995931	A	0.8959155	A	1.00255236983515	0	lncRNA	45395-1_{1..69}	ENST00000516919 ncrna:snoRNA chromosome:GRCh37:1:35409357:35409425:1 gene:ENSG00000252728 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516919 ncrna:snoRNA chromosome:GRCh37:1:35409357:35409425:1 gene:ENSG00000252728 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 35409357	 35409425	+	ENSG00000252728	ENST00000516919	NA	NA	NA	NA	NA	inter
CUST_46831_PI429285431	5.501193	P	5.202303	P	1.23019754329973	0	lncRNA	50970-1_{1..3000}	"gi|388556517|ref|NR_049772.1| Homo sapiens proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) (PSME3), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388556517|ref|NR_049772.1| Homo sapiens proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) (PSME3), transcript variant 4, non-coding RNA"	Chr17	 40985159	 40988158	+	10197	NR_049772.1	NA	NA	NA	NA	NA	inter
CUST_775_PI429285431	0.9048734	A	0.8978839	A	1.0048565070059	0	lncRNA	767-1_{1..637}	"transcript_id ""ENST00000444804.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444804.1"" | genecode_v17"	chr2	 16383698	 16384334	+	ENSG00000226041.1	ENST00000444804.1	AC010745.1	AC010745.1-001	NA	NA	NA	inter
LNCA_21_P0005529	2.9049478	A	2.8920975	A	1.00894693590885	0	lncRNA	TCONS_00013948	NA	NA	NA	NA	XLOC_006597	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006597), lincRNA [TCONS_00013948]"	chr7:127876456-127876397	hs|7q32.1	Agilent_HUMAN_G3V2	TCONS_00013948	TCONS_00013948	chr7	127876397	127876456	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005689	11.340538	P	12.036608	P	0.617251353497709	0	lncRNA	ENST00000523507	NA	NA	NA	NA	XLOC_006775	NA	ENST00000523507	THC2710632	NA	"BROAD Institute lincRNA (XLOC_006775), lincRNA [TCONS_00014676]"	chr8:37590997-37591056	hs|8p11.23	Agilent_HUMAN_G3V2	ENST00000523507	ENST00000523507	chr8	 37590997	 37591056	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17344_PI429285431	0.9001249	A	0.904508	A	0.996966477049944	0	lncRNA	19062-1_{1..490}	lnc-RP11-152O14.5.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-152O14.5.1-1:2	chr16	 52112309	 52112798	-	lnc-RP11-152O14.5.1-1	lnc-RP11-152O14.5.1-1:2	XLOC_011940	linc-SALL1-3	LOC388276	NA	chr16:52102309-52107847	inter
CUST_25988_PI429285431	0.8944149	A	0.90371644	A	0.993573403250942	0	lncRNA	27507-1_{1..383}	lnc-C10orf137-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C10orf137-2:2	chr10	127266780	127267162	+	lnc-C10orf137-2	lnc-C10orf137-2:2	ENSG00000237675.1	RP11-118H17.1	NA	NA	NA	inter
LNCA_24_P639665	0.890496	A	0.8889394	A	1.00107953518034	0	lncRNA	XR_108928	XR_108928	XR_108928	100506247	Hs.649971	LOC100506247	uncharacterized LOC100506247	NA	THC2614708	NA	"PREDICTED: Homo sapiens hypothetical LOC100506247 (LOC100506247), miscRNA [XR_108928]"	chr9:8861154-8861213	hs|9p24.1	Agilent_HUMAN_G3V2	XR_108928	XR_108928	chr9	  8861154	  8861213	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26256_PI429285431	0.99982285	A	0.89214194	A	1.07749480233664	0	lncRNA	27763-1_{1..769}	lnc-FOXK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-FOXK2-1:1	chr17	 80441181	 80441949	+	lnc-FOXK2-1	lnc-FOXK2-1:1	ENSG00000266236.1	NARF-OT1	NARF	"hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.30chr17:80431181-80446143"	NA	inner
CUST_47377_PI429285431	2.7802706	A	2.9193316	A	0.908110020221845	0	lncRNA	51425-1_{1..558}	"gi|397139744|ref|XR_109670.2| PREDICTED: Homo sapiens uncharacterized LOC100506369 (LOC100506369), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139744|ref|XR_109670.2| PREDICTED: Homo sapiens uncharacterized LOC100506369 (LOC100506369), misc_RNA"	NA	NA	NA	NA	NA	XR_109670.2	NA	NA	NA	NA	NA	Unknown
CUST_8801_PI429285431	2.4454885	A	1.9953252	A	1.36619488887905	0	lncRNA	10342-1_{1..2633}	lnc-CXADR-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CXADR-2:1	chr21	 19376673	 19379305	+	lnc-CXADR-2	lnc-CXADR-2:1	ENSG00000250851	ENST00000510743	NA	NA	NA	inner
CUST_21248_PI429285431	0.90890074	A	0.8926368	A	1.01133708730604	0	lncRNA	22874-1_{1..558}	lnc-OST4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OST4-2:2	chr2	 27237369	 27237926	-	lnc-OST4-2	lnc-OST4-2:2	ENSG00000205500.4	AC013472.3	MAPRE3	NA	chr2:27227369-27247456	inner
CUST_48438_PI429285431	3.4655619	P	4.056483	P	0.663918887465914	0	lncRNA	52290-1_{1..2742}	hg19_lincRNAsTranscripts_TCONS_l2_00000659 range=chr1:159930877-159950196 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000659 range=chr1:159930877-159950196 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	159930877	159933618	+	NA	NA	NA	NA	SLAMF9	NA	chr1:159921282-159924044	inter
CUST_40265_PI429285431	0.90382975	A	0.92906696	A	0.982659015048782	0	lncRNA	41075-1_{1..1398}	n408199|NR_028344|lncRNA|Homosapiens||RefGeneNoncode|NR_028344||-0.3855310|-0.1800738	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408199|NR_028344|lncRNA|Homosapiens||RefGeneNoncode|NR_028344||-0.3855310|-0.1800738	chrX	139791923	139793320	+	NA	NA	NA	NA	NA	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-15.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-37.31;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90"	NA	inner
LNCA_21_P0007455	5.8224792	P	6.3207607	P	0.707949569850402	0	lncRNA	TCONS_00020022	NA	NA	NA	NA	XLOC_009324	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009324), lincRNA [TCONS_00020022]"	chr11:126926107-126926166	hs|11q24.2	Agilent_HUMAN_G3V2	TCONS_00020022	TCONS_00020022	chr11	126926107	126926166	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001378	3.5558543	P	3.6441517	P	0.940632183753747	0	lncRNA	TCONS_00001176	NA	NA	NA	NA	XLOC_000429	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000429), lincRNA [TCONS_00001176]"	chr1:158132689-158132748	hs|1q23.1	Agilent_HUMAN_G3V2	TCONS_00001176	TCONS_00001176	chr1	158132689	158132748	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28099_PI429285431	1.0156637	A	1.0563258	A	0.972208666618441	0	lncRNA	29721-1_{1..533}	n325371|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324039|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324039|-1.1990100|-0.3099254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325371|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324039|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324039|-1.1990100|-0.3099254	chr2	 23103485	 23104017	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005153	3.0805385	P	3.28539	P	0.867627989549303	0	lncRNA	XR_112812	XR_112812	XR_112812	NA	NA	LOC100507336	uncharacterized LOC100507336	ENST00000443445	THC2776454	NA	"PREDICTED: Homo sapiens hypothetical LOC100507336, transcript variant 1 (LOC100507336), miscRNA [XR_112812]"	chr6:3594673-3594614	hs|6p25.2	Agilent_HUMAN_G3V2	XR_112812	XR_112812	chr6	  3594614	  3594673	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006534	3.4840672	P	2.9884157	P	1.40995732752481	0	lncRNA	TCONS_00017321	NA	NA	NA	NA	XLOC_008164	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008164), lincRNA [TCONS_00017321]"	chrX:49121780-49121721	hs|Xp11.23	Agilent_HUMAN_G3V2	TCONS_00017321	TCONS_00017321	chrX	 49121721	 49121780	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002835	0.8878436	A	0.88266623	A	1.00359512643799	0	lncRNA	ENST00000451031	NA	NA	NA	NA	XLOC_003020	NA	ENST00000451031	NA	NA	"BROAD Institute lincRNA (XLOC_003020), lincRNA [TCONS_00005725]"	chr3:3302551-3302492	hs|3p26.2	Agilent_HUMAN_G3V2	ENST00000451031	ENST00000451031	chr3	  3302492	  3302551	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002403	1.1307027	A	0.91668123	A	1.15991691610971	0	lncRNA	TCONS_00004148	NA	NA	NA	NA	XLOC_001990	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001990), lincRNA [TCONS_00004148]"	chr2:12675932-12675873	hs|2p24.3	Agilent_HUMAN_G3V2	TCONS_00004148	TCONS_00004148	chr2	 12675873	 12675932	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005202	5.6241646	P	5.993864	P	0.773943738922717	0	lncRNA	XR_108720	XR_108720	XR_108720	NA	Hs.557780	LOC100507642	uncharacterized LOC100507642	NA	THC2629510	NA	"PREDICTED: Homo sapiens hypothetical LOC100507642 (LOC100507642), miscRNA [XR_108720]"	chr7:152494-153414	hs|7p22.3	Agilent_HUMAN_G3V2	XR_108720	XR_108720	chr7	   152494	   153414	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006959	0.9405058	A	0.99712133	A	0.961517133080663	0	lncRNA	TCONS_00018419	NA	NA	NA	NA	XLOC_008708	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008708), lincRNA [TCONS_00018419]"	chr10:5592263-5592204	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_00018419	TCONS_00018419	chr10	  5592204	  5592263	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009245	0.93826544	A	0.99354184	A	0.962410041262565	0	lncRNA	THC2608833	NA	NA	NA	NA	XLOC_012197	NA	NA	THC2608833	NA	"BROAD Institute lincRNA (XLOC_012197), lincRNA [TCONS_00025382]"	chr17:038677044-038677103	hs|17q21.2	Agilent_HUMAN_G3V2	THC2608833	THC2608833	chr17	 38677044	 38677103	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3419865	0.93675315	A	1.1242003	A	0.878158249017954	0	lncRNA	XR_112726	XR_112726	XR_112726	   646719	Hs.697792	LOC646719	uncharacterized LOC646719	NA	THC2513537	NA	"PREDICTED: Homo sapiens hypothetical LOC646719 (LOC646719), miscRNA [XR_112726]"	chr5:36864662-36864603	hs|5p13.2	Agilent_HUMAN_G3V2	XR_112726	XR_112726	chr5	 36864603	 36864662	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25576_PI429285431	0.9182185	A	2.407944	A	0.356080293460349	0	lncRNA	27106-1_{1..515}	lnc-PHYHIP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-PHYHIP-1:1	chr8	 22132492	 22133006	-	lnc-PHYHIP-1	lnc-PHYHIP-1:1	ENSG00000254064.1	CTD-2530N21.4	PIWIL2	NA	chr8:22132810-22142675	inter
CUST_12578_PI429285431	0.91307914	A	0.9212415	A	0.994358257918048	0	lncRNA	14186-1_{1..800}	lnc-MKLN1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MKLN1-1:3	chr7	130606295	130607094	+	lnc-MKLN1-1	lnc-MKLN1-1:3	XLOC_006252	linc-MKLN1-2	NA	NA	NA	inter
LNCA_21_P0007595	0.90676016	A	1.1454322	A	0.847525076305256	0	lncRNA	BC037383	NA	BC037383	NA	Hs.171314	XLOC_009818	NA	NA	THC2605993	NA	"BROAD Institute lincRNA (XLOC_009818), lincRNA [TCONS_00020496]"	chr12:81163984-81164043	hs|12q21.31	Agilent_HUMAN_G3V2	BC037383	BC037383	chr12	 81163984	 81164043	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21026_PI429285431	2.9834008	A	3.039599	A	0.961795312444474	0	lncRNA	22654-1_{1..462}	lnc-ABL1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ABL1-1:1	chr9	133820610	133821071	+	lnc-ABL1-1	lnc-ABL1-1:1	ENSG00000236658.1	RP11-83J21.3	FIBCD1	NA	chr9:133810610-133814455	inter
CUST_16271_PI429285431	5.8155694	P	5.6571474	P	1.11606573286215	0	lncRNA	17976-1_{1..495}	lnc-AP001496.1-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP001496.1-10:1	chr18	  5887633	  5888127	+	lnc-AP001496.1-10	lnc-AP001496.1-10:1	XLOC_012618	linc-ARHGAP28-2	TMEM200C	NA	chr18:5890184-5892103	inter
LNCA_21_P0009819	4.384499	P	4.7546105	P	0.773722696597186	0	lncRNA	AK309387	NA	AK309387	NA	NA	XLOC_013704	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013704), lincRNA [TCONS_00027886]"	chr20:25123739-25123680	hs|20p11.21	Agilent_HUMAN_G3V2	AK309387	AK309387	chr20	 25123680	 25123739	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16072_PI429285431	1.9023074	A	1.4969621	A	1.32440586069126	0	lncRNA	17775-1_{1..454}	lnc-KLF3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KLF3-4:1	chr4	 38547997	 38548450	+	lnc-KLF3-4	lnc-KLF3-4:1	XLOC_003511	linc-KLF3-2	NA	NA	NA	inter
CUST_36823_PI429285431	2.1131356	A	2.364821	A	0.839914628205801	0	lncRNA	37991-1_{1..1521}	n345299|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_848|NULL|-1.3108900|-0.1922826	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345299|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_848|NULL|-1.3108900|-0.1922826	chr15	 21136559	 21138079	+	NA	NA	NA	NA	NA	"hg19_refFlat_NF1:range=chr17:29422328-297011735'pad=0,hg19_refFlat_NF1:range=chr17:29422328-297011735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10"	NA	inter
LNCA_21_P0003776	8.408255	P	8.209801	P	1.14746806278642	0	lncRNA	TCONS_00008590	NA	NA	NA	NA	XLOC_004096	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004096), lincRNA [TCONS_00008590]"	chr4:139925572-139925513	hs|4q31.1	Agilent_HUMAN_G3V2	TCONS_00008590	TCONS_00008590	chr4	139925513	139925572	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014075	6.0514317	P	6.9346733	P	0.542147906367498	0	lncRNA	XR_108352	XR_108352	XR_108352	NA	NA	LOC339400	uncharacterized LOC339400	NA	THC2601937	NA	"PREDICTED: Homo sapiens hypothetical LOC339400 (LOC339400), miscRNA [XR_108352]"	chr1:152339252-152339311	hs|1q21.3	Agilent_HUMAN_G3V2	XR_108352	XR_108352	chr1	152339252	152339311	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002984	0.8893378	A	0.88401675	A	1.00369508084574	0	lncRNA	TCONS_00006106	NA	NA	NA	NA	XLOC_002717	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002717), lincRNA [TCONS_00006106]"	chr3:81043657-81043716	hs|3p12.2	Agilent_HUMAN_G3V2	TCONS_00006106	TCONS_00006106	chr3	 81043657	 81043716	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21215_PI429285431	0.9080095	A	0.89346945	A	1.01012935273015	0	lncRNA	22840-1_{1..406}	lnc-NBPF9-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NBPF9-2:1	chr1	144877872	144878277	+	lnc-NBPF9-2	lnc-NBPF9-2:1	ENSG00000254913.1	RP4-791M13.5	PDE4DIP	"hg19_refFlat_PDE4DIP:range=chr1:144852458-1450396095'pad=0,hg19_refFlat_PDE4DIP:range=chr1:144852458-1450396095'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PDE4DIP:range=chr1:144852354-1449947315'pad=0,hg19_refFlat_PDE4DIP:range=chr1:144852354-1449947315'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PDE4DIP:range=chr1:144852458-1449947315'pad=0,hg19_refFlat_PDE4DIP:range=chr1:144852458-1449947315'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90chr1:144867872-144888163"	NA	inner
CUST_38105_PI429285431	0.9039609	A	0.8898256	A	1.00984599935497	0	lncRNA	39179-2_{3001..3347}	n381149|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001dgv.2||4.7458800|-0.3206452	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381149|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001dgv.2||4.7458800|-0.3206452	chr1	 76106851	 76107197	-	NA	NA	NA	NA	ACADM	NA	chr1:76107023-76198721	inter
CUST_22879_PI429285431	1.5511707	A	0.9082017	A	1.56153943117801	0	lncRNA	24455-1_{1..879}	lnc-CCDC34-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC34-1:3	chr11	 27241234	 27242112	-	lnc-CCDC34-1	lnc-CCDC34-1:3	ENSG00000254560.1	RP11-1L12.3	NA	NA	NA	inter
CUST_21851_PI429285431	7.0924015	P	7.63205	P	0.687938498837904	0	lncRNA	23461-1_{1..679}	lnc-CCDC107-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC107-2:1	chr9	 35642877	 35643555	+	lnc-CCDC107-2	lnc-CCDC107-2:1	ENSG00000231393.1	RP11-331F9.3	SIT1	NA	chr9:35649295-35650947	inter
LNCA_21_P0007872	0.8907346	A	1.808192	A	0.529441283742654	0	lncRNA	TCONS_00021293	NA	NA	NA	NA	XLOC_010026	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010026), lincRNA [TCONS_00021293]"	chr12:20262713-20258718	hs|12p12.2	Agilent_HUMAN_G3V2	TCONS_00021293	TCONS_00021293	chr12	 20258718	 20262713	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12620_PI429285431	6.780474	P	6.829177	P	0.966805107635292	0	lncRNA	14235-1_{1..3000}	lnc-MRGPRF-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MRGPRF-4:1	chr11	 69002348	 69005347	-	lnc-MRGPRF-4	lnc-MRGPRF-4:1	XLOC_009483	linc-MRGPRF-4	NA	NA	NA	inter
CUST_16844_PI429285431	0.9005368	A	0.8988433	A	1.00117453397568	0	lncRNA	18552-1_{1..550}	lnc-OR51E1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OR51E1-1:2	chr11	  4693251	  4693800	+	lnc-OR51E1-1	lnc-OR51E1-1:2	XLOC_009038	linc-OR51F2-2	OR51E2	NA	chr11:4701401-4703464	inter
CUST_1883_PI429285431	0.914704	A	2.221603	A	0.404188729802448	0	lncRNA	1873-1_{1..630}	"transcript_id ""ENST00000508942.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000508942.1"" | genecode_v17"	chr4	131297384	131298013	+	ENSG00000251326.1	ENST00000508942.1	RP11-521E5.1	RP11-521E5.1-001	NA	"hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0,hg19_refFlat_OLAH:range=chr10:15089288-151152285'pad=0 3'pad=0 strand=+ repeatMasking=none,-18.60"	NA	inter
LNCA_21_P0003992	0.895016	A	0.88240755	A	1.00877781259608	0	lncRNA	ENST00000507027	NA	NA	NA	NA	XLOC_004351	NA	ENST00000507027	THC2659976	NA	"BROAD Institute lincRNA (XLOC_004351), lincRNA [TCONS_00009388]"	chr5:40053340-40053399	hs|5p13.1	Agilent_HUMAN_G3V2	ENST00000507027	ENST00000507027	chr5	 40053340	 40053399	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44621_PI429285431	5.6012006	P	4.913824	P	1.61035258557718	0	lncRNA	49188-2_{3001..6000}	"gi|197099983|ref|NR_024084.1| Homo sapiens SAP30-like (SAP30L), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|197099983|ref|NR_024084.1| Homo sapiens SAP30-like (SAP30L), transcript variant 4, non-coding RNA"	Chr5	153828517	153831516	+	79685	NR_024084.1	NA	NA	NA	NA	NA	inter
CUST_363_PI429201921	1.0684397	A	2.0534792	A	0.505211890699214	0	lncRNA	233-1_{1..3000}	TC04002667.hg.1	TCONS_l2_00021942-XLOC_l2_011214 // Broad TUCP // linc-TBCK chr4:-:107279554-107288359 // chr4 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr4:-:107279554-107288359	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00021942-XLOC_l2_011214	linc-TBCK	chr4	107279554	107288359	-	NA	NA	NA	NA	DAB1	NA	chr1:57842248-57863122	Unknown
CUST_20381_PI429285431	6.0055356	P	6.0629053	P	0.96101463057456	0	lncRNA	22023-1_{1..2206}	lnc-CBLN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CBLN2-1:1	chr18	 70410991	 70413196	-	lnc-CBLN2-1	lnc-CBLN2-1:1	ENSG00000265579.1	RP11-713C5.1	NETO1	NA	chr18:70409549-70423196	inner
LNCA_21_P0014407	0.9409808	A	2.0155635	A	0.474808379089429	0	lncRNA	XR_109629	XR_109629	XR_109629	NA	Hs.128204	LOC100506348	uncharacterized LOC100506348	NA	THC2655657	NA	"PREDICTED: Homo sapiens hypothetical LOC100506348 (LOC100506348), miscRNA [XR_109629]"	chr20:57349805-57349864	hs|20q13.32	Agilent_HUMAN_G3V2	XR_109629	XR_109629	chr20	 57349805	 57349864	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24471_PI429285431	1.2891774	A	1.1239854	A	1.12131529751401	0	lncRNA	26024-1_{1..440}	lnc-GSN-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GSN-2:1	chr9	124214253	124214692	+	lnc-GSN-2	lnc-GSN-2:1	ENSG00000227355.1	RP11-162D16.2	NA	NA	NA	inter
CUST_46403_PI429285431	3.7762585	P	4.2698092	P	0.710274846456519	0	lncRNA	50617-1_{1..2652}	"gi|385648246|ref|NR_047664.1| Homo sapiens maternally expressed 9 (non-protein coding) (MEG9), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|385648246|ref|NR_047664.1| Homo sapiens maternally expressed 9 (non-protein coding) (MEG9), non-coding RNA"	Chr14	101536248	101538899	+	100507257	NR_047664.1	NA	NA	NA	NA	NA	inter
CUST_26502_PI429285431	3.8356686	P	4.151119	P	0.803600072866314	0	lncRNA	28010-2_{3001..3468}	lnc-CA5A-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-CA5A-2:2	chr16	 88137300	 88137767	-	lnc-CA5A-2	lnc-CA5A-2:2	ENSG00000205037.2	RP11-863P13.4	NA	NA	NA	inter
CUST_45693_PI429285431	1.9697138	A	2.785118	A	0.568249257867545	0	lncRNA	50065-1_{1..652}	"gi|310120589|ref|XR_109031.1| PREDICTED: Homo sapiens uncharacterized LOC100506057, transcript variant 2 (LOC100506057), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120589|ref|XR_109031.1| PREDICTED: Homo sapiens uncharacterized LOC100506057, transcript variant 2 (LOC100506057), misc_RNA"	NA	NA	NA	NA	NA	XR_109031.1	NA	NA	NA	NA	NA	Unknown
CUST_23811_PI429285431	11.686028	P	11.987067	P	0.811667639080418	0	lncRNA	25376-1_{1..433}	lnc-AL359736.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-AL359736.1-3:1	chr13	 24828474	 24828906	-	lnc-AL359736.1-3	lnc-AL359736.1-3:1	ENSG00000227213.1	SPATA13-AS1	SPATA13	NA	chr13:24818474-24838577	inner
CUST_4508_PI429285431	0.91800225	A	1.2274628	A	0.80694343369161	0	lncRNA	4457-1_{1..801}	"transcript_id ""ENST00000540745.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000540745.1"" | genecode_v17"	chr12	128571530	128572330	-	ENSG00000256551.1	ENST00000540745.1	RP13-653N12.1	RP13-653N12.1-001	NA	NA	NA	inter
CUST_15733_PI429285431	2.9756858	A	1.9278326	A	2.06745109036162	0	lncRNA	17418-1_{1..462}	lnc-FAM181B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM181B-3:1	chr11	 81535918	 81536379	-	lnc-FAM181B-3	lnc-FAM181B-3:1	XLOC_009516	linc-ODZ4-1	NA	NA	NA	inter
CUST_28543_PI429285431	1.7829196	A	2.4927258	A	0.611402264172119	0	lncRNA	30215-1_{1..551}	n325892|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050228|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050228|-1.1142300|-0.3923747	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325892|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000050228|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000050228|-1.1142300|-0.3923747	chr10	107890038	107890588	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30267_PI429285431	0.9100937	A	0.90280926	A	1.00506195768435	0	lncRNA	32042-1_{1..1092}	n335152|AY307931|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251585|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251585|-0.4954220|-0.1648685	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335152|AY307931|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000251585|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000251585|-0.4954220|-0.1648685	chr7	100547227	100548318	-	NA	NA	NA	NA	MUC3A	NA	chr7:100547257-100560424	inter
CUST_27386_PI429285431	3.089205	A	3.9272637	P	0.559395789504652	0	lncRNA	28948-1_{1..1202}	n324548|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000076389|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000076389|0.9328610|-0.1691224	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324548|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000076389|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000076389|0.9328610|-0.1691224	chr6	 30842580	 30843781	+	NA	NA	NA	NA	DDR1	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80chr6:30851861-30867933"	NA	inner
LNCA_21_P0014241	0.8917352	A	0.8919148	A	0.999875518514834	0	lncRNA	ENST00000478815	XR_108991	XR_108991	NA	NA	RNF183	ring finger protein 183	ENST00000478815	THC2677174	GO:0016020|GO:0008270|GO:0016021|GO:0046872	"PREDICTED: Homo sapiens hypothetical LOC100507626 (LOC100507626), miscRNA [XR_108991]"	chr9:116061867-116061808	hs|9q32	Agilent_HUMAN_G3V2	ENST00000478815	ENST00000478815	chr9	116061808	116061867	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014529	1.840385	A	0.8843609	A	1.93995622708486	0	lncRNA	XR_110216	XR_110216	XR_110216	NA	NA	LOC100506245	uncharacterized LOC100506245	NA	THC2503194	NA	"PREDICTED: Homo sapiens hypothetical LOC100506245 (LOC100506245), miscRNA [XR_110216]"	chr14:64907215-64907156	hs|14q23.3	Agilent_HUMAN_G3V2	XR_110216	XR_110216	chr14	 64907156	 64907215	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_300_PI429285431	0.9032677	A	0.8881664	A	1.01052239864388	0	lncRNA	292-1_{1..1526}	"transcript_id ""ENST00000452834.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452834.1"" | genecode_v17"	chr1	 83439565	 83441090	-	ENSG00000236268.1	ENST00000452834.1	RP11-170N11.1	RP11-170N11.1-002	NA	NA	NA	inter
CUST_12219_PI429285431	7.9823203	P	8.158818	P	0.88484845747298	0	lncRNA	13823-1_{1..374}	lnc-TSHZ2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSHZ2-4:1	chr20	 52464562	 52464935	+	lnc-TSHZ2-4	lnc-TSHZ2-4:1	XLOC_013570	linc-PFDN4-3	NA	NA	NA	inter
LNCA_21_P0011710	1.840543	A	0.9012609	A	1.91757379661107	0	lncRNA	TCONS_l2_00012688	NA	NA	NA	NA	XLOC_l2_006812	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006812), lincRNA [TCONS_l2_00012688]"	chr19:53715159-53715218	hs|19q13.42	Agilent_HUMAN_G3V2	TCONS_l2_00012688	TCONS_l2_00012688	chr19	 53715159	 53715218	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49391_PI429285431	1.3531494	A	1.2666898	A	1.06176140087905	0	lncRNA	53204-1_{1..1043}	hg19_lincRNAsTranscripts_TCONS_l2_00022565 range=chr5:142138582-142146100 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022565 range=chr5:142138582-142146100 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	142138582	142139624	+	NA	NA	NA	NA	ARHGAP26	NA	chr5:142150292-142156100	inter
CUST_24822_PI429285431	1.0614723	A	1.1371635	A	0.948887396916518	0	lncRNA	26362-1_{1..652}	lnc-KLHL22-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLHL22-1:1	chr22	 20877940	 20878591	-	lnc-KLHL22-1	lnc-KLHL22-1:1	ENSG00000236003.1	AC007050.17	MED15	NA	chr22:20867940-20888157	inner
LNCA_21_P0009218	0.89490086	A	0.88075244	A	1.00985518302815	0	lncRNA	TCONS_00025299	NA	NA	NA	NA	XLOC_012103	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012103), lincRNA [TCONS_00025299]"	chr17:8624640-8624699	hs|17p13.1	Agilent_HUMAN_G3V2	TCONS_00025299	TCONS_00025299	chr17	  8624640	  8624699	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50097_PI429285431	3.2664242	P	3.8562922	P	0.664403694167594	0	lncRNA	53829-1_{1..658}	hg19_lincRNAsTranscripts_TCONS_l2_00029570 range=chr9:117428718-117444346 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029570 range=chr9:117428718-117444346 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	117428718	117429375	-	NA	NA	NA	NA	LOC100505478	NA	chr9:117428714-117444369	inner
CUST_46952_PI429285431	8.363077	P	8.363342	P	0.999816332866026	0	lncRNA	51058-1_{1..3000}	"gi|289547539|ref|NR_033338.1| Homo sapiens chromosome 17 open reading frame 70 (C17orf70), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|289547539|ref|NR_033338.1| Homo sapiens chromosome 17 open reading frame 70 (C17orf70), transcript variant 1, non-coding RNA"	Chr17	 79506911	 79509910	-	80233	NR_033338.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0007726	2.0541732	A	0.8835814	A	2.25104016682419	0	lncRNA	ENST00000552290	NA	NA	NA	NA	XLOC_010132	NA	ENST00000552290	NA	NA	"BROAD Institute lincRNA (XLOC_010132), lincRNA [TCONS_00020847]"	chr12:76084523-76084464	hs|12q21.2	Agilent_HUMAN_G3V2	ENST00000552290	ENST00000552290	chr12	 76084464	 76084523	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005557	5.4789863	P	5.785101	P	0.808817041630248	0	lncRNA	TCONS_00014118	NA	NA	NA	NA	XLOC_006069	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006069), lincRNA [TCONS_00014118]"	chr7:44889165-44889224	hs|7p13	Agilent_HUMAN_G3V2	TCONS_00014118	TCONS_00014118	chr7	 44889165	 44889224	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005366	4.321596	P	4.834106	P	0.701001773839822	0	lncRNA	TCONS_00013399	NA	NA	NA	NA	XLOC_006028	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006028), lincRNA [TCONS_00013399]"	chr7:27449561-27449620	hs|7p15.2	Agilent_HUMAN_G3V2	TCONS_00013399	TCONS_00013399	chr7	 27449561	 27449620	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_353_PI429201921	1.7762572	A	2.0681055	A	0.816854879233943	0	lncRNA	228-2_{3001..6000}	TC0Y000307.hg.1	 TCONS_00017586-XLOC_008319 // Rinn lincRNAs // linc-AMELY-5 chrY:-:9544434-9552871 // chrY // 100 // 100 // 0 // --- // 0///TCONS_00017597-XLOC_008319 // Rinn lincRNAs // linc-AMELY-5 chrY:-:9544434-9548661 // chrY // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chrY:-:9544434-9548661	NA	Affy_HUMAN_HTA2.0	TCONS_00017597-XLOC_008319	linc-AMELY-5	chrY	  9544434	  9548661	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006163	0.92454934	A	1.1729362	A	0.84183718392569	0	lncRNA	TCONS_00016034	NA	NA	NA	NA	XLOC_007429	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007429), lincRNA [TCONS_00016034]"	chr9:87199215-87199274	hs|9q21.33	Agilent_HUMAN_G3V2	TCONS_00016034	TCONS_00016034	chr9	 87199215	 87199274	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009346	1.0801749	A	0.9265808	A	1.11233712224135	0	lncRNA	TCONS_00025730	NA	NA	NA	NA	XLOC_012551	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012551), lincRNA [TCONS_00025730]"	chr17:63074468-63074409	hs|17q24.1	Agilent_HUMAN_G3V2	TCONS_00025730	TCONS_00025730	chr17	 63074409	 63074468	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007745	0.91317064	A	0.9254801	A	0.99150402899726	0	lncRNA	TCONS_00020888	NA	NA	NA	NA	XLOC_010165	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010165), lincRNA [TCONS_00020888]"	chr12:97415593-97415534	hs|12q23.1	Agilent_HUMAN_G3V2	TCONS_00020888	TCONS_00020888	chr12	 97415534	 97415593	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003386	0.900648	A	0.90778196	A	0.995067321552881	0	lncRNA	ENST00000504132	NA	NA	NA	NA	XLOC_003636	NA	ENST00000504132	THC2653827	NA	"BROAD Institute lincRNA (XLOC_003636), lincRNA [TCONS_00007586]"	chr4:107374543-107374602	hs|4q24	Agilent_HUMAN_G3V2	ENST00000504132	ENST00000504132	chr4	107374543	107374602	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014177	4.4012957	P	5.417354	P	0.494465476199181	0	lncRNA	XR_108722	XR_108722	XR_108722	NA	NA	LOC100505500	uncharacterized LOC100505500	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505500, transcript variant 1 (LOC100505500), miscRNA [XR_108722]"	chr7:648080-648139	hs|7p22.3	Agilent_HUMAN_G3V2	XR_108722	XR_108722	chr7	   648080	   648139	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007728	2.3718455	A	3.4211712	P	0.483193951300367	0	lncRNA	TCONS_00020850	NA	NA	NA	NA	XLOC_010135	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010135), lincRNA [TCONS_00020850]"	chr12:77667520-77667461	hs|12q21.2	Agilent_HUMAN_G3V2	TCONS_00020850	TCONS_00020850	chr12	 77667461	 77667520	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32013_PI429285431	0.905386	A	0.90738654	A	0.998614292320151	0	lncRNA	33734-1_{1..2442}	n338578|AX746517|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|984|NULL|-0.9864480|-0.2927103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338578|AX746517|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|984|NULL|-0.9864480|-0.2927103	chr19	 37672481	 37674922	-	NA	NA	NA	NA	ZNF585B	NA	chr19:37672481-37684920	inner
LNCA_21_P0014367	0.8895034	A	0.88091403	A	1.00597145608122	0	lncRNA	XR_109475	XR_109475	XR_109475	NA	NA	LOC100506837	uncharacterized LOC100506837	NA	THC2657742	NA	"PREDICTED: Homo sapiens hypothetical LOC100506837 (LOC100506837), miscRNA [XR_109475]"	chr18:35193601-35196229	hs|18q12.2	Agilent_HUMAN_G3V2	XR_109475	XR_109475	chr18	 35193601	 35196229	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007859	0.8895338	A	0.8805974	A	1.00621346444397	0	lncRNA	TCONS_00021244	NA	NA	NA	NA	XLOC_009935	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009935), lincRNA [TCONS_00021244]"	chr12:126580774-126580833	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00021244	TCONS_00021244	chr12	126580774	126580833	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40062_PI429285431	1.6333083	A	1.7609764	A	0.915309715987573	0	lncRNA	40912-1_{1..2431}	n407278|NR_026751_2|lncRNA|Homosapiens||RefGeneNoncode|NR_026751_2||-1.2216600|-0.2887143	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407278|NR_026751_2|lncRNA|Homosapiens||RefGeneNoncode|NR_026751_2||-1.2216600|-0.2887143	chr6	  1261701	  1264131	-	NA	NA	NA	NA	FOXQ1	NA	chr6:1312675-1314993	inner
LNCA_21_P0003552	0.89028335	A	0.87909657	A	1.0077842257881	0	lncRNA	BC033535	NA	BC033535	NA	Hs.385812	XLOC_004227	NA	ENST00000514297	THC2505505	NA	"BROAD Institute lincRNA (XLOC_004227), lincRNA [TCONS_00009205]"	chr4:189712288-189712229	hs|4q35.2	Agilent_HUMAN_G3V2	BC033535	BC033535	chr4	189712229	189712288	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23567_PI429285431	4.467122	P	3.9941003	P	1.38801359637891	0	lncRNA	25135-1_{1..566}	lnc-VCAN-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VCAN-1:2	chr5	 83786476	 83787041	+	lnc-VCAN-1	lnc-VCAN-1:2	ENSG00000250320.1	CTD-2269F5.1	NA	NA	NA	inter
CUST_19852_PI429285431	2.110333	A	0.9109952	A	2.2963424421388	0	lncRNA	21509-1_{1..402}	lnc-HEMGN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HEMGN-1:1	chr9	100749802	100750203	-	lnc-HEMGN-1	lnc-HEMGN-1:1	ENSG00000236896.1	RP11-535C21.3	ANP32B	NA	chr9:100745489-100759938	inner
LNCA_21_P0013597	1.2868803	A	1.937957	A	0.636804881421011	0	lncRNA	TCONS_l2_00029018	NA	NA	NA	NA	XLOC_l2_015003	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015003), lincRNA [TCONS_l2_00029018]"	chr9:125371271-125371330	hs|9q33.2	Agilent_HUMAN_G3V2	TCONS_l2_00029018	TCONS_l2_00029018	chr9	125371271	125371330	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37435_PI429285431	8.750951	P	8.646143	P	1.07535126860757	0	lncRNA	38537-2_{3001..6000}	n345886|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1435|NULL|-1.6761900|-0.2983266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n345886|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1435|NULL|-1.6761900|-0.2983266	chr12	105949681	105952680	+	NA	NA	NA	NA	NA	"hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30"	NA	inter
CUST_43290_PI429285431	0.90420943	A	0.8877486	A	1.01147511768777	0	lncRNA	48108-1_{1..360}	ENST00000605703 havana:sense_intronic chromosome:GRCh37:15:25376125:25376484:1 gene:ENSG00000270523 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000605703 havana:sense_intronic chromosome:GRCh37:15:25376125:25376484:1 gene:ENSG00000270523 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr15	 25376125	 25376484	+	ENSG00000270523	ENST00000605703	NA	NA	SNRPN	NA	chr15:25366125-25386484	inter
CUST_12910_PI429285431	0.89402807	A	0.88176185	A	1.00853854298137	0	lncRNA	14539-1_{1..215}	lnc-C15orf54-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C15orf54-2:3	chr15	 39680863	 39681077	+	lnc-C15orf54-2	lnc-C15orf54-2:3	XLOC_011215	linc-THBS1-3	NA	NA	NA	inter
CUST_42799_PI429285431	8.587661	P	8.559262	P	1.01987970776804	0	lncRNA	45794-1_{1..107}	ENST00000391036 ncrna:snoRNA chromosome:GRCh37:1:179165608:179165714:1 gene:ENSG00000212338 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391036 ncrna:snoRNA chromosome:GRCh37:1:179165608:179165714:1 gene:ENSG00000212338 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	179165608	179165714	+	ENSG00000212338	ENST00000391036	NA	NA	ABL2	NA	chr1:179155608-179175714	inner
LNCA_21_P0013778	0.8902293	A	1.4366083	A	0.684736584147732	0	lncRNA	ENST00000423738	NA	NA	NA	NA	XLOC_l2_015578	NA	ENST00000423738	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015578), lincRNA [TCONS_l2_00030282]"	chrX:100745024-100745083	hs|Xq22.1	Agilent_HUMAN_G3V2	ENST00000423738	ENST00000423738	chrX	100745024	100745083	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009644	4.818623	P	4.515911	P	1.23346091388374	0	lncRNA	AF075036	NA	AF075036	NA	Hs.324978	XLOC_012953	NA	NA	THC2513663	NA	"BROAD Institute lincRNA (XLOC_012953), lincRNA [TCONS_00026770]"	chr19:9649415-9649474	hs|19p13.2	Agilent_HUMAN_G3V2	AF075036	AF075036	chr19	  9649415	  9649474	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002201	5.7285433	P	5.8553095	P	0.915882100240122	0	lncRNA	TCONS_00003641	NA	NA	NA	NA	XLOC_001436	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001436), lincRNA [TCONS_00003641]"	chr2:38673689-38673748	hs|2p22.1	Agilent_HUMAN_G3V2	TCONS_00003641	TCONS_00003641	chr2	 38673689	 38673748	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7192_PI429285431	9.473294	P	9.8590765	P	0.765363762081111	0	lncRNA	7519-1_{1..102}	"transcript_id ""ENST00000410574.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410574.1"" | genecode_v17"	chr3	171157315	171157416	+	ENSG00000222506.1	ENST00000410574.1	Y_RNA	Y_RNA.664-201	TNIK	NA	chr3:171147315-171167416	inner
CUST_50294_PI429285431	0.92635864	A	0.9776853	A	0.965048490515676	0	lncRNA	54013-1_{1..462}	hg19_lincRNAsTranscripts_TCONS_l2_00029436 range=chr9:88379625-88380205 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029436 range=chr9:88379625-88380205 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 88379625	 88380086	-	NA	NA	NA	NA	NA	"hg19_refFlat_KIF27:range=chr9:86451916-865305065'pad=0,hg19_refFlat_KIF27:range=chr9:86451916-865305065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20"	NA	inter
LNCA_21_P0009974	0.9090091	A	0.91950387	A	0.992751974318288	0	lncRNA	TCONS_00028217	NA	NA	NA	NA	XLOC_013563	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013563), lincRNA [TCONS_00028217]"	chr20:49617295-49617354	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028217	TCONS_00028217	chr20	 49617295	 49617354	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008703	4.9547176	P	5.5747623	P	0.650650767854142	0	lncRNA	TCONS_00023571	NA	NA	NA	NA	XLOC_011393	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011393), lincRNA [TCONS_00023571]"	chr15:21913766-21913707	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023571	TCONS_00023571	chr15	 21913707	 21913766	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15278_PI429285431	1.0827177	A	1.2759334	A	0.874653983996918	0	lncRNA	16953-1_{1..348}	lnc-TBXAS1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBXAS1-1:1	chr7	139782984	139783331	+	lnc-TBXAS1-1	lnc-TBXAS1-1:1	XLOC_006276	linc-RAB19	JHDM1D	NA	chr7:139784546-139793219	inter
LNCA_32_P377008	5.0095954	P	5.1027718	P	0.937456465557248	0	lncRNA	ENST00000422194	XR_132685	XR_132685	NA	NA	NA	NA	ENST00000422194	THC2643762	NA	"PREDICTED: Homo sapiens uncharacterized protein CXorf49-like (LOC100129291), miscRNA [XR_132685]"	chrX:70885452-70884807	hs|Xq13.1	Agilent_HUMAN_G3V2	ENST00000422194	ENST00000422194	chrX	 70884807	 70885452	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002664	1.213573	A	0.8879589	A	1.25319776337794	0	lncRNA	TCONS_00005168	NA	NA	NA	NA	XLOC_002128	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002128), lincRNA [TCONS_00005168]"	chr2:64750153-64747476	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00005168	TCONS_00005168	chr2	 64747476	 64750153	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003846	0.8901065	A	0.88614273	A	1.00275125377106	0	lncRNA	TCONS_00008868	NA	NA	NA	NA	XLOC_003636	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003636), lincRNA [TCONS_00008868]"	chr4:107378401-107378460	hs|4q24	Agilent_HUMAN_G3V2	TCONS_00008868	TCONS_00008868	chr4	107378401	107378460	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013377	0.8898462	A	1.2287202	A	0.790658166940971	0	lncRNA	ENST00000457000	XR_108753	XR_108753	NA	Hs.114761	XLOC_l2_013315	NA	ENST00000457000	THC2606581	NA	"BROAD Institute lincRNA (XLOC_l2_013315), lincRNA [TCONS_l2_00027080]"	chr7:26594667-26594726	hs|7p15.2	Agilent_HUMAN_G3V2	ENST00000457000	ENST00000457000	chr7	 26594667	 26594726	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25135_PI429285431	0.90555805	A	3.4583297	P	0.170427299035537	0	lncRNA	26673-1_{1..472}	lnc-RASGEF1B-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RASGEF1B-1:2	chr4	 82965154	 82965625	-	lnc-RASGEF1B-1	lnc-RASGEF1B-1:2	ENSG00000251331.1	RP11-689K5.3	NA	NA	NA	inter
LNCA_24_P348083	15.900335	P	16.018744	P	0.921202990710763	0	lncRNA	XR_111773	XR_111773	XR_111773	   147341	Hs.730381	C18orf23	chromosome 18 open reading frame 23	NA	NP1164839	NA	"PREDICTED: Homo sapiens chromosome 18 open reading frame 23 (C18orf23), miscRNA [XR_111773]"	chr18:43914943-43915002	hs|18q21.1	Agilent_HUMAN_G3V2	XR_111773	XR_111773	chr18	 43914943	 43915002	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39523_PI429285431	1.3425535	A	0.8878249	A	1.37052495737386	0	lncRNA	40469-1_{1..570}	n387340|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011cnt.1||1.3642500|-0.3136773	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387340|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011cnt.1||1.3642500|-0.3136773	chr5	 22142460	 22143029	+	NA	NA	NA	NA	CDH12	NA	chr5:22132460-22162612	inner
LNCA_21_P0002653	2.4871793	A	2.3488498	A	1.10062995573474	0	lncRNA	THC2634133	NA	NA	NA	NA	XLOC_002026	NA	NA	THC2634133	NA	"BROAD Institute lincRNA (XLOC_002026), lincRNA [TCONS_00005117]"	chr2:025956715-025956656	hs|2p23.3	Agilent_HUMAN_G3V2	THC2634133	THC2634133	chr2	 25956656	 25956715	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012795	0.89323723	A	1.2715982	A	0.769311100254256	0	lncRNA	ENST00000513332	NA	NA	NA	NA	XLOC_l2_011277	NA	ENST00000513332	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011277), lincRNA [TCONS_l2_00021990]"	chr4:137039963-137039904	hs|4q28.3	Agilent_HUMAN_G3V2	ENST00000513332	ENST00000513332	chr4	137039904	137039963	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007947	0.8934214	A	0.8792616	A	1.00986314881231	0	lncRNA	ENST00000436872	NA	NA	NA	NA	XLOC_010434	NA	ENST00000436872	NA	NA	"BROAD Institute lincRNA (XLOC_010434), lincRNA [TCONS_00021569]"	chr13:76455202-76455261	hs|13q22.2	Agilent_HUMAN_G3V2	ENST00000436872	ENST00000436872	chr13	 76455202	 76455261	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005221	0.89390814	A	1.144413	A	0.840602201522142	0	lncRNA	ENST00000458087	XR_108767	XR_108767	NA	NA	XLOC_006043	NA	ENST00000458087	THC2609379	NA	"PREDICTED: Homo sapiens hypothetical LOC100506725, transcript variant 1 (LOC100506725), miscRNA [XR_108767]"	chr7:35756726-35758726	hs|7p14.2	Agilent_HUMAN_G3V2	ENST00000458087	ENST00000458087	chr7	 35756726	 35758726	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15238_PI429285431	0.8941126	A	0.9591143	A	0.955944191156043	0	lncRNA	16909-1_{1..977}	lnc-JPH3-3:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JPH3-3:5	chr16	 87539880	 87540856	+	lnc-JPH3-3	lnc-JPH3-3:5	XLOC_011821	linc-JPH3-2	NA	NA	NA	inter
CUST_7980_PI429285431	0.8966935	A	0.88554096	A	1.00776030796664	0	lncRNA	9592-1_{1..3000}	lnc-FBXO25-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBXO25-2:1	chr8	   609383	   612382	+	lnc-FBXO25-2	lnc-FBXO25-2:1	ENSG00000244964	ENST00000499740	ERICH1	NA	chr8:614200-621619	inter
CUST_4425_PI429285431	2.1317983	A	1.8001697	A	1.25843316723157	0	lncRNA	4375-1_{1..486}	"transcript_id ""ENST00000550742.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550742.1"" | genecode_v17"	chr12	117037075	117037560	+	ENSG00000258249.1	ENST00000550742.1	RP11-497G19.3	RP11-497G19.3-001	NA	NA	NA	inter
CUST_47609_PI429285431	3.2540288	P	5.4554257	P	0.217427013577445	0	lncRNA	51607-6_{15001..18000}	"gi|383087740|ref|NR_001564.2| Homo sapiens X (inactive)-specific transcript (non-protein coding) (XIST), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|383087740|ref|NR_001564.2| Homo sapiens X (inactive)-specific transcript (non-protein coding) (XIST), non-coding RNA"	ChrX	 73055486	 73058485	-	7503	NR_001564.2	NA	NA	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_21352_PI429285431	1.0575571	A	0.89515877	A	1.11914605608167	0	lncRNA	22976-1_{1..719}	lnc-U47924.19.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-U47924.19.1-1:5	chr12	  7083501	  7084219	+	lnc-U47924.19.1-1	lnc-U47924.19.1-1:5	ENSG00000126749.7	EMG1	PHB2	NA	chr12:7074515-7079916	inner
LNCA_21_P0004320	0.89337337	A	0.8838269	A	1.00663905019859	0	lncRNA	ENST00000522704	NA	NA	NA	NA	XLOC_004617	NA	ENST00000522704	NA	NA	"BROAD Institute lincRNA (XLOC_004617), lincRNA [TCONS_00010150]"	chr5:157930318-157930377	hs|5q33.3	Agilent_HUMAN_G3V2	ENST00000522704	ENST00000522704	chr5	157930318	157930377	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8884_PI429285431	3.6962705	P	3.614152	P	1.0585713401745	0	lncRNA	10421-1_{1..2185}	lnc-TBPL2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TBPL2-1:1	chr14	 56046654	 56048838	-	lnc-TBPL2-1	lnc-TBPL2-1:1	ENSG00000186615	ENST00000412224	KTN1	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-68.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0,hg19_refFlat_KLRC3:range=chr12:10565171-105731495'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80chr14:56046925-56056828"	NA	inter
CUST_40893_PI429285431	4.414146	P	5.27115	P	0.552097892839033	0	lncRNA	41581-2_{3001..3636}	n410704|NR_037985|lncRNA|Homosapiens||RefGeneNoncode|NR_037985||5.8711100|-0.2323428	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410704|NR_037985|lncRNA|Homosapiens||RefGeneNoncode|NR_037985||5.8711100|-0.2323428	chr17	 15905693	 15906328	+	NA	NA	NA	NA	NCOR1	"hg19_refFlat_ZSWIM7:range=chr17:15881361-159029085'pad=0,hg19_refFlat_ZSWIM7:range=chr17:15881361-159029085'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40chr17:15933408-15942723"	NA	inner
CUST_33680_PI429285431	4.728213	P	4.8994493	P	0.888081324486367	0	lncRNA	35241-1_{1..585}	n340450|AF085927|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2911|NULL|-0.7550900|-0.1907546	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340450|AF085927|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2911|NULL|-0.7550900|-0.1907546	chr17	   421176	   421760	-	NA	NA	NA	NA	VPS53	"hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.60;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-47.64;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90chr17:411908-431752"	NA	inner
CUST_5997_PI429285431	9.88768	P	9.542926	P	1.2699344222158	0	lncRNA	5923-1_{1..501}	"transcript_id ""ENST00000590023.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590023.1"" | genecode_v17"	chr17	 76613471	 76613971	-	ENSG00000267123.1	ENST00000590023.1	CTD-2357A8.3	CTD-2357A8.3-003	NA	NA	NA	inter
CUST_20446_PI429285431	0.9103799	A	0.9672876	A	0.961322429412483	0	lncRNA	22090-1_{1..782}	lnc-DBX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DBX1-2:1	chr11	 20070520	 20071301	-	lnc-DBX1-2	lnc-DBX1-2:1	ENSG00000254453.1	NAV2-AS2	NAV2	"hg19_refFlat_NAV2:range=chr11:19735242-201398045'pad=0,hg19_refFlat_NAV2:range=chr11:19735242-201398045'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_NAV2:range=chr11:20044653-201398045'pad=0,hg19_refFlat_NAV2:range=chr11:20044653-201398045'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_NAV2:range=chr11:19372500-201398045'pad=0,hg19_refFlat_NAV2:range=chr11:19372500-201398045'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10chr11:20060520-20080849"	NA	inner
CUST_29644_PI429285431	0.9216038	A	0.9448619	A	0.984007965994111	0	lncRNA	31405-1_{1..552}	n333224|AF520804|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000081171|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000081171|2.2420700|-0.2243019	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333224|AF520804|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000081171|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000081171|2.2420700|-0.2243019	chr6	  9708166	  9708717	-	NA	NA	NA	NA	OFCC1	NA	chr6:9698166-9943500	inter
CUST_36336_PI429285431	5.7921677	P	6.0296535	P	0.84822223097601	0	lncRNA	37567-1_{1..3000}	n344864|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_413|NULL|-1.3509700|-0.2557729	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344864|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_413|NULL|-1.3509700|-0.2557729	chr5	180672875	180675874	-	NA	NA	NA	NA	GNB2L1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-63.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90chr5:180663928-180670906"	NA	inter
CUST_25321_PI429285431	1.855895	A	2.9478524	A	0.46912445038538	0	lncRNA	26853-1_{1..660}	lnc-DBX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DBX1-1:1	chr11	 20142120	 20142779	-	lnc-DBX1-1	lnc-DBX1-1:1	ENSG00000254894.1	NAV2-AS1	NAV2	NA	chr11:20132120-20143147	inner
LNCA_21_P0005870	0.89467806	A	0.89710575	A	0.998318668545262	0	lncRNA	TCONS_00015086	NA	NA	NA	NA	XLOC_007150	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007150), lincRNA [TCONS_00015086]"	chr8:91605031-91604972	hs|8q21.3	Agilent_HUMAN_G3V2	TCONS_00015086	TCONS_00015086	chr8	 91604972	 91605031	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23802_PI429285431	0.9158881	A	0.8830595	A	1.02301592267109	0	lncRNA	25367-1_{1..1201}	lnc-THUMPD3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THUMPD3-3:1	chr3	  9235410	  9236610	+	lnc-THUMPD3-3	lnc-THUMPD3-3:1	ENSG00000228723.1	SRGAP3-AS2	SRGAP3	NA	chr3:9225410-9246045	inner
LNCA_21_P0006308	0.88982147	A	1.5028389	A	0.653827774964204	0	lncRNA	TCONS_00016456	NA	NA	NA	NA	XLOC_007822	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007822), lincRNA [TCONS_00016456]"	chr9:110109843-110102784	hs|9q31.2	Agilent_HUMAN_G3V2	TCONS_00016456	TCONS_00016456	chr9	110102784	110109843	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22145_PI429285431	4.1125093	P	4.2311997	P	0.921023326100706	0	lncRNA	23746-1_{1..492}	lnc-TRIM63-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM63-1:1	chr1	 26498108	 26498599	-	lnc-TRIM63-1	lnc-TRIM63-1:1	ENSG00000236782.1	RP11-96L14.7	CNKSR1	NA	chr1:26503981-26508312	inter
LNCA_21_P0005392	0.8904498	A	0.9078899	A	0.987984216915566	0	lncRNA	TCONS_00013494	NA	NA	NA	NA	XLOC_006138	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006138), lincRNA [TCONS_00013494]"	chr7:66805281-66805340	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_00013494	TCONS_00013494	chr7	 66805281	 66805340	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16981_PI429285431	1.1103253	A	0.90130746	A	1.15590100004425	0	lncRNA	18690-1_{1..487}	lnc-CLDN20-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLDN20-2:1	chr6	156203079	156203565	+	lnc-CLDN20-2	lnc-CLDN20-2:1	XLOC_005512	linc-ARID1B-4	NA	NA	NA	inter
CUST_16908_PI429285431	4.838492	P	4.732188	P	1.0764669304925	0	lncRNA	18618-1_{1..369}	lnc-SVIL-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SVIL-2:1	chr10	 30132020	 30132388	-	lnc-SVIL-2	lnc-SVIL-2:1	XLOC_008763	linc-SVIL-2	NA	NA	NA	inter
LNCA_21_P0004486	0.89354026	A	0.8792943	A	1.00992346121699	0	lncRNA	TCONS_00010614	NA	NA	NA	NA	XLOC_004276	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004276), lincRNA [TCONS_00010614]"	chr5:7272997-7273458	hs|5p15.31	Agilent_HUMAN_G3V2	TCONS_00010614	TCONS_00010614	chr5	  7272997	  7273458	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003416	1.659909	A	0.88037837	A	1.71657230810535	0	lncRNA	ENST00000505586	NA	NA	NA	NA	XLOC_003733	NA	ENST00000505586	NA	NA	"BROAD Institute lincRNA (XLOC_003733), lincRNA [TCONS_00007657]"	chr4:150877376-150879442	hs|4q31.23	Agilent_HUMAN_G3V2	ENST00000505586	ENST00000505586	chr4	150877376	150879442	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003431	4.242161	P	5.2161674	P	0.509090341480278	0	lncRNA	ENST00000504509	NA	NA	NA	NA	XLOC_003775	NA	ENST00000504509	THC2629762	NA	"BROAD Institute lincRNA (XLOC_003775), lincRNA [TCONS_00007679]"	chr4:171204168-171204227	hs|4q33	Agilent_HUMAN_G3V2	ENST00000504509	ENST00000504509	chr4	171204168	171204227	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15717_PI429285431	7.780934	P	7.66895	P	1.08071341647757	0	lncRNA	17403-1_{1..873}	lnc-C10orf31-7:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf31-7:9	chr10	 10836661	 10837533	-	lnc-C10orf31-7	lnc-C10orf31-7:9	XLOC_008730	linc-KIN-6	NA	NA	NA	inter
CUST_43197_PI429285431	0.9009437	A	0.99672675	A	0.935764205863952	0	lncRNA	48011-1_{1..725}	ENST00000602328 havana:sense_intronic chromosome:GRCh37:8:133838424:133839148:1 gene:ENSG00000270137 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000602328 havana:sense_intronic chromosome:GRCh37:8:133838424:133839148:1 gene:ENSG00000270137 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr8	133838424	133839148	+	ENSG00000270137	ENST00000602328	NA	NA	PHF20L1	NA	chr8:133828424-133849148	inner
LNCA_21_P0007228	3.719211	P	4.3951426	P	0.625927904658624	0	lncRNA	TCONS_00019367	NA	NA	NA	NA	XLOC_009190	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009190), lincRNA [TCONS_00019367]"	chr11:69003106-69003165	hs|11q13.3	Agilent_HUMAN_G3V2	TCONS_00019367	TCONS_00019367	chr11	 69003106	 69003165	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47809_PI429285431	17.79708	P	17.758823	P	1.02687245528089	0	lncRNA	51726-3_{6001..9000}	"gi|374429547|ref|NR_046235.1| Homo sapiens RNA, 45S pre-ribosomal 5 (RNA45S5), ribosomal RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ensembl.GRCh37.72,ncbi,"	">gi|374429547|ref|NR_046235.1| Homo sapiens RNA, 45S pre-ribosomal 5 (RNA45S5), ribosomal RNA"	NA	NA	NA	NA	NA	NR_046235.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004897	1.6935556	A	0.8834547	A	1.75333406398705	0	lncRNA	TCONS_00011855	NA	NA	NA	NA	XLOC_005344	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005344), lincRNA [TCONS_00011855]"	chr6:72189120-72189179	hs|6q13	Agilent_HUMAN_G3V2	TCONS_00011855	TCONS_00011855	chr6	 72189120	 72189179	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008045	1.9870403	A	2.819404	A	0.561608353533642	0	lncRNA	TCONS_00021747	NA	NA	NA	NA	XLOC_010339	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010339), lincRNA [TCONS_00021747]"	chr13:32015286-32017529	hs|13q12.3	Agilent_HUMAN_G3V2	TCONS_00021747	TCONS_00021747	chr13	 32015286	 32017529	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011493	3.2269251	P	3.3729467	P	0.903739195885441	0	lncRNA	BC160930	NA	BC160930	NA	Hs.657523	XLOC_l2_005606	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005606), lincRNA [TCONS_l2_00010378]"	chr16:89980280-89980221	hs|16q24.3	Agilent_HUMAN_G3V2	BC160930	BC160930	chr16	 89980221	 89980280	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31075_PI429285431	5.294169	P	5.0587373	P	1.17725895764446	0	lncRNA	32866-1_{1..215}	n337316|DQ200867|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391775|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391775|1.0736100|-0.1526214	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337316|DQ200867|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000391775|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000391775|1.0736100|-0.1526214	chr2	122363256	122363470	-	NA	NA	NA	NA	CLASP1	NA	chr2:122353256-122373471	inner
LNCA_21_P0004108	0.9321803	A	1.6337531	A	0.6149014866733	0	lncRNA	ENST00000512978	NA	NA	NA	NA	XLOC_004747	NA	ENST00000512978	NA	NA	"BROAD Institute lincRNA (XLOC_004747), lincRNA [TCONS_00009612]"	chr5:18704601-18704542	hs|5p14.3	Agilent_HUMAN_G3V2	ENST00000512978	ENST00000512978	chr5	 18704542	 18704601	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011794	2.6058698	A	3.0569391	A	0.731500471810198	0	lncRNA	TCONS_l2_00013502	NA	NA	NA	NA	XLOC_l2_007237	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007237), lincRNA [TCONS_l2_00013502]"	chr2:20314760-20314819	hs|2p24.1	Agilent_HUMAN_G3V2	TCONS_l2_00013502	TCONS_l2_00013502	chr2	 20314760	 20314819	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009084	0.9295163	A	0.9914776	A	0.957960914984053	0	lncRNA	TCONS_00024764	NA	NA	NA	NA	XLOC_012044	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012044), lincRNA [TCONS_00024764]"	chr16:86259078-86259019	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024764	TCONS_00024764	chr16	 86259019	 86259078	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41715_PI429285431	0.9534739	A	0.9859256	A	0.977757295007387	0	lncRNA	43222-1_{1..82}	ENST00000384921 ncrna:miRNA chromosome:GRCh37:2:136422967:136423048:1 gene:ENSG00000207654 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384921 ncrna:miRNA chromosome:GRCh37:2:136422967:136423048:1 gene:ENSG00000207654 gene_biotype:miRNA transcript_biotype:miRNA	chr2	136422967	136423048	+	ENSG00000207654	ENST00000384921	NA	NA	R3HDM1	NA	chr2:136412967-136433048	inner
LNCA_21_P0005042	0.92393476	A	0.9704273	A	0.968287556792246	0	lncRNA	TCONS_00012226	NA	NA	NA	NA	XLOC_005784	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005784), lincRNA [TCONS_00012226]"	chr6:95256357-95256298	hs|6q16.1	Agilent_HUMAN_G3V2	TCONS_00012226	TCONS_00012226	chr6	 95256298	 95256357	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011597	0.9161865	A	2.2058167	A	0.409055867425613	0	lncRNA	TCONS_l2_00011376	NA	NA	NA	NA	XLOC_l2_006152	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006152), lincRNA [TCONS_l2_00011376]"	chr17:58200929-58200870	hs|17q23.1	Agilent_HUMAN_G3V2	TCONS_l2_00011376	TCONS_l2_00011376	chr17	 58200870	 58200929	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001574	3.63467	P	0.92632973	A	6.53569323735774	0	lncRNA	TCONS_00001644	NA	NA	NA	NA	XLOC_000983	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000983), lincRNA [TCONS_00001644]"	chr1:119869567-119869508	hs|1p12	Agilent_HUMAN_G3V2	TCONS_00001644	TCONS_00001644	chr1	119869508	119869567	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009195	8.6083355	P	8.794838	P	0.878733439070883	0	lncRNA	TCONS_00025234	NA	NA	NA	NA	XLOC_012507	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012507), lincRNA [TCONS_00025234]"	chr17:47556408-47556349	hs|17q21.33	Agilent_HUMAN_G3V2	TCONS_00025234	TCONS_00025234	chr17	 47556349	 47556408	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007314	0.90188295	A	0.90944463	A	0.994772354773346	0	lncRNA	TCONS_00019568	NA	NA	NA	NA	XLOC_009365	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009365), lincRNA [TCONS_00019568]"	chr11:7013124-7009115	hs|11p15.4	Agilent_HUMAN_G3V2	TCONS_00019568	TCONS_00019568	chr11	  7009115	  7013124	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008848	2.1492698	A	0.9176315	A	2.34833511438541	0	lncRNA	TCONS_00024123	NA	NA	NA	NA	XLOC_011480	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011480), lincRNA [TCONS_00024123]"	chr15:52407429-52407370	hs|15q21.2	Agilent_HUMAN_G3V2	TCONS_00024123	TCONS_00024123	chr15	 52407370	 52407429	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39067_PI429285431	6.2361293	P	5.2515693	P	1.97870974448008	0	lncRNA	40042-1_{1..1253}	n385532|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004acl.2||3.2739500|-0.3285024	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385532|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004acl.2||3.2739500|-0.3285024	chr9	 42671886	 42673138	+	NA	NA	NA	NA	CBWD7	NA	chr9:42661886-42714961	inter
CUST_44138_PI429285431	3.5714123	P	0.89517725	A	6.39185663517918	0	lncRNA	48801-1_{1..2638}	"gi|376319242|ref|NR_046352.1| Homo sapiens CCR4-NOT transcription complex, subunit 10 (CNOT10), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|376319242|ref|NR_046352.1| Homo sapiens CCR4-NOT transcription complex, subunit 10 (CNOT10), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_046352.1	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-15.20;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.80;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30"	NA	Unknown
CUST_47833_PI429285431	3.8784935	P	3.6431987	P	1.17714725066532	0	lncRNA	51740-1_{1..3000}	"gi|410170907|ref|XR_171121.1| PREDICTED: Homo sapiens uncharacterized LOC101060237 (LOC101060237), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170907|ref|XR_171121.1| PREDICTED: Homo sapiens uncharacterized LOC101060237 (LOC101060237), misc_RNA"	NA	NA	NA	NA	NA	XR_171121.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.00"	NA	Unknown
LNCA_21_P0010390	1.4791776	A	1.553294	A	0.949923737720765	0	lncRNA	TCONS_00029500	NA	NA	NA	NA	XLOC_014143	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014143), lincRNA [TCONS_00029500]"	chr22:17742058-17742117	hs|22q11.1	Agilent_HUMAN_G3V2	TCONS_00029500	TCONS_00029500	chr22	 17742058	 17742117	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009539	0.89010096	A	0.8804482	A	1.00671321667393	0	lncRNA	TCONS_00026475	NA	NA	NA	NA	XLOC_012803	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012803), lincRNA [TCONS_00026475]"	chr18:29065434-29065375	hs|18q12.1	Agilent_HUMAN_G3V2	TCONS_00026475	TCONS_00026475	chr18	 29065375	 29065434	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43363_PI429285431	8.327847	P	8.473364	P	0.90405534486014	0	lncRNA	48180-1_{1..2382}	"gi|379643025|ref|NR_046425.1| Homo sapiens chromosome 1 open reading frame 86 (C1orf86), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|379643025|ref|NR_046425.1| Homo sapiens chromosome 1 open reading frame 86 (C1orf86), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NR_046425.1	NA	NA	NA	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PRKCZ:range=chr1:2075778-21164485'pad=0,hg19_refFlat_PRKCZ:range=chr1:2075778-21164485'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PRKCZ:range=chr1:2005693-21164485'pad=0,hg19_refFlat_PRKCZ:range=chr1:2005693-21164485'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_PRKCZ:range=chr1:1982070-21164485'pad=0,hg19_refFlat_PRKCZ:range=chr1:1982070-21164485'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60"	NA	Unknown
CUST_45220_PI429285431	5.1785507	P	5.82532	P	0.638709006785357	0	lncRNA	49680-1_{1..384}	"gi|341915427|ref|XR_132552.1| PREDICTED: Homo sapiens uncharacterized LOC100288310 (LOC100288310), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|341915427|ref|XR_132552.1| PREDICTED: Homo sapiens uncharacterized LOC100288310 (LOC100288310), misc_RNA"	NA	NA	NA	NA	NA	XR_132552.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004203	0.8924749	A	0.878927	A	1.00943491954886	0	lncRNA	TCONS_00009841	NA	NA	NA	NA	XLOC_004256	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004256), lincRNA [TCONS_00009841]"	chr5:2918797-2918856	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00009841	TCONS_00009841	chr5	  2918797	  2918856	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6564_PI429285431	1.8607563	A	2.0240498	A	0.892984166336721	0	lncRNA	6513-1_{1..590}	"transcript_id ""ENST00000600813.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000600813.1"" | genecode_v17"	chr19	 51774653	 51775242	+	ENSG00000268318.1	ENST00000600813.1	CTD-3187F8.11	CTD-3187F8.11-002	IGLON5	NA	chr19:51784089-51794385	inter
CUST_47239_PI429285431	0.9079412	A	1.30587	A	0.758947081179287	0	lncRNA	51313-2_{3001..4924}	"gi|223278358|ref|NR_001558.3| Homo sapiens long intergenic non-protein coding RNA 261 (LINC00261), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|223278358|ref|NR_001558.3| Homo sapiens long intergenic non-protein coding RNA 261 (LINC00261), non-coding RNA"	Chr20	 22544191	 22546114	-	140828	NR_001558.3	NA	NA	NA	NA	NA	inter
LNCA_21_P0005297	2.1521778	A	3.9997303	P	0.277863357388755	0	lncRNA	ENST00000439751	NA	NA	NA	NA	XLOC_006414	NA	ENST00000439751	NA	NA	"BROAD Institute lincRNA (XLOC_006414), lincRNA [TCONS_00013157]"	chr7:39585349-39585290	hs|7p14.1	Agilent_HUMAN_G3V2	ENST00000439751	ENST00000439751	chr7	 39585290	 39585349	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10121_PI429285431	5.010435	P	5.1846814	P	0.886230325692675	0	lncRNA	11646-1_{1..281}	lnc-OLFM3-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OLFM3-1:3	chr1	102854091	102854371	-	lnc-OLFM3-1	lnc-OLFM3-1:3	XLOC_000943	linc-OLFM3-2	NA	NA	NA	inter
CUST_38588_PI429285431	1.1007216	A	0.9212378	A	1.13247860903368	0	lncRNA	39598-2_{3001..3718}	n383639|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002sag.2||-1.1868700|-0.3192103	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383639|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002sag.2||-1.1868700|-0.3192103	chr2	 60754632	 60755349	-	NA	NA	NA	NA	BCL11A	NA	chr2:60741632-60765350	inner
CUST_42079_PI429285431	5.679653	P	5.672905	P	1.00468831308439	0	lncRNA	44002-1_{1..75}	ENST00000385299 ncrna:miRNA chromosome:GRCh37:X:133303568:133303642:-1 gene:ENSG00000208034 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385299 ncrna:miRNA chromosome:GRCh37:X:133303568:133303642:-1 gene:ENSG00000208034 gene_biotype:miRNA transcript_biotype:miRNA	chrX	133303568	133303642	-	ENSG00000208034	ENST00000385299	NA	NA	NA	NA	NA	inter
CUST_34591_PI429285431	9.768542	P	9.808605	P	0.972612474178488	0	lncRNA	36049-1_{1..1474}	n341475|D84108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3945|NULL|4.7983100|-0.1343449	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341475|D84108|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3945|NULL|4.7983100|-0.1343449	chr8	 30242042	 30243515	+	NA	NA	NA	NA	RBPMS	NA	chr8:30241944-30429734	inner
CUST_21484_PI429285431	0.9260739	A	0.976215	A	0.965841862008831	0	lncRNA	23102-1_{1..189}	lnc-DUPD1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DUPD1-2:1	chr10	 76784868	 76785056	-	lnc-DUPD1-2	lnc-DUPD1-2:1	ENSG00000234149.1	RP11-77G23.2	KAT6B	"hg19_refFlat_KAT6B:range=chr10:76602616-767908045'pad=0,hg19_refFlat_KAT6B:range=chr10:76602616-767908045'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20chr10:76774868-76792639"	NA	inner
CUST_2989_PI429285431	0.9130411	A	0.9162316	A	0.997790957454151	0	lncRNA	2968-1_{1..573}	"transcript_id ""ENST00000518846.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518846.1"" | genecode_v17"	chr8	  8418901	  8419473	+	ENSG00000253130.1	ENST00000518846.1	CTD-3023L14.2	CTD-3023L14.2-001	NA	NA	NA	inter
CUST_19024_PI429285431	5.5153275	P	5.4092145	P	1.07632442527251	0	lncRNA	20714-1_{1..416}	lnc-AL592284.1-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL592284.1-1:9	chr1	144606129	144606544	+	lnc-AL592284.1-1	lnc-AL592284.1-1:9	ENSG00000225241	NBPF8	NBPF9	NA	chr1:144614959-144616278	inter
CUST_23976_PI429285431	1.3583678	A	0.91558105	A	1.35922731472533	0	lncRNA	25531-1_{1..292}	lnc-UNC5CL-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-UNC5CL-3:1	chr6	 40469976	 40470267	-	lnc-UNC5CL-3	lnc-UNC5CL-3:1	ENSG00000236075.1	RP11-121P10.1	LRFN2	NA	chr6:40459976-40480132	inner
CUST_3821_PI429285431	0.91805387	A	0.9287503	A	0.992613217085297	0	lncRNA	3789-1_{1..438}	"transcript_id ""ENST00000451295.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000451295.1"" | genecode_v17"	chr10	125333743	125334180	+	ENSG00000234542.1	ENST00000451295.1	RP11-282I1.2	RP11-282I1.2-001	NA	NA	NA	inter
LNCA_21_P0002978	0.91437376	A	0.92694557	A	0.99132374319539	0	lncRNA	TCONS_00006097	NA	NA	NA	NA	XLOC_002708	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002708), lincRNA [TCONS_00006097]"	chr3:74955813-74955872	hs|3p12.3	Agilent_HUMAN_G3V2	TCONS_00006097	TCONS_00006097	chr3	 74955813	 74955872	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21035_PI429285431	1.6863395	A	1.1403943	A	1.45997655317226	0	lncRNA	22663-1_{1..3000}	lnc-CTSL2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-CTSL2-4:1	chr9	 99983312	 99986311	-	lnc-CTSL2-4	lnc-CTSL2-4:1	ENSG00000159712.9	ANKRD18CP	NA	NA	NA	inter
CUST_47762_PI429285431	0.90839714	A	0.916316	A	0.994526101199743	0	lncRNA	51699-2_{3001..6000}	"gi|385137100|ref|NR_047638.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 68, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137100|ref|NR_047638.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 68, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047638.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0005479	0.9075057	A	0.9171063	A	0.993367464186605	0	lncRNA	TCONS_00013739	NA	NA	NA	NA	XLOC_006384	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006384), lincRNA [TCONS_00013739]"	chr7:26097506-26097447	hs|7p15.2	Agilent_HUMAN_G3V2	TCONS_00013739	TCONS_00013739	chr7	 26097447	 26097506	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27409_PI429285431	2.931772	A	3.3488705	P	0.748929332318363	0	lncRNA	28973-1_{1..212}	n324574|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039977|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039977|-0.8578890|-0.2934362	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324574|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039977|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039977|-0.8578890|-0.2934362	chr6	 19848386	 19848597	-	NA	NA	NA	NA	ID4	NA	chr6:19838386-19840915	inter
LNCA_21_P0002955	0.9016796	A	1.5874426	A	0.621676952593544	0	lncRNA	TCONS_00006007	NA	NA	NA	NA	XLOC_002632	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002632), lincRNA [TCONS_00006007]"	chr3:45351611-45370924	hs|3p21.31	Agilent_HUMAN_G3V2	TCONS_00006007	TCONS_00006007	chr3	 45351611	 45370924	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004912	0.89726794	A	1.6722354	A	0.584401805320101	0	lncRNA	TCONS_00011906	NA	NA	NA	NA	XLOC_005405	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005405), lincRNA [TCONS_00011906]"	chr6:101410735-101410794	hs|6q16.3	Agilent_HUMAN_G3V2	TCONS_00011906	TCONS_00011906	chr6	101410735	101410794	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15009_PI429285431	0.91077536	A	0.9167296	A	0.995881340371133	0	lncRNA	16671-1_{1..2383}	lnc-MTRNR2L5-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MTRNR2L5-3:1	chr10	 58073027	 58075409	+	lnc-MTRNR2L5-3	lnc-MTRNR2L5-3:1	XLOC_008486	linc-CISD1	NA	NA	NA	inter
LNCA_21_P0003225	0.89007396	A	0.8812318	A	1.00614773852328	0	lncRNA	TCONS_00006815	NA	NA	NA	NA	XLOC_002612	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002612), lincRNA [TCONS_00006815]"	chr3:34477062-34477121	hs|3p22.3	Agilent_HUMAN_G3V2	TCONS_00006815	TCONS_00006815	chr3	 34477062	 34477121	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16126_PI429285431	3.128555	A	3.5788476	P	0.731894393856263	0	lncRNA	17832-1_{1..506}	lnc-TSPEAR-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSPEAR-1:2	chr21	 45871259	 45871764	-	lnc-TSPEAR-1	lnc-TSPEAR-1:2	XLOC_014118	linc-C21orf2-2	TRPM2	NA	chr21:45861259-45862964	inter
CUST_8673_PI429285431	0.8999049	A	0.8847974	A	1.01052674138587	0	lncRNA	10222-1_{1..1772}	lnc-RP11-410N8.4.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-410N8.4.1-3:1	chr20	 31142049	 31143820	+	lnc-RP11-410N8.4.1-3	lnc-RP11-410N8.4.1-3:1	ENSG00000245977	ENST00000498926	LOC284804	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-48.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_C20orf112:range=chr20:31035399-311726925'pad=0,hg19_refFlat_C20orf112:range=chr20:31035399-311726925'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50chr20:31136309-31152122"	NA	inner
LNCA_21_P0014875	2.2448337	A	0.87979066	A	2.57584010305197	0	lncRNA	XR_132779	XR_132779	XR_132779	NA	NA	LOC100653018	uncharacterized LOC100653018	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100653018 (LOC100653018), miscRNA [XR_132779]"	chr12:45269769-45269828	hs|12q12	Agilent_HUMAN_G3V2	XR_132779	XR_132779	chr12	 45269769	 45269828	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37179_PI429285431	6.3637505	P	6.5915384	P	0.853943248925364	0	lncRNA	38294-1_{1..1909}	n345613|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1162|NULL|-1.3274200|-0.3773318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345613|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1162|NULL|-1.3274200|-0.3773318	chr4	 13187222	 13189130	-	NA	NA	NA	NA	NA	"hg19_refFlat_HSP90AB1:range=chr6:44216367-442213355'pad=0,hg19_refFlat_HSP90AB1:range=chr6:44216367-442213355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50"	NA	inter
LNCA_21_P0006366	0.8936974	A	0.8793701	A	1.00998040290446	0	lncRNA	TCONS_00016674	NA	NA	NA	NA	XLOC_007528	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007528), lincRNA [TCONS_00016674]"	chr9:117420383-117420442	hs|9q32	Agilent_HUMAN_G3V2	TCONS_00016674	TCONS_00016674	chr9	117420383	117420442	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26622_PI429285431	3.3904185	P	3.7290044	P	0.790816073745359	0	lncRNA	28125-1_{1..987}	lnc-FBXL5-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-FBXL5-4:2	chr4	 14889683	 14890669	-	lnc-FBXL5-4	lnc-FBXL5-4:2	ENSG00000248360.2	LINC00504	NA	NA	NA	inter
CUST_31481_PI429285431	3.4823	P	4.1121016	P	0.646265283868733	0	lncRNA	33247-1_{1..3000}	n337961|BX640776|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|346|NULL|-1.2049300|-0.3170792	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337961|BX640776|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|346|NULL|-1.2049300|-0.3170792	chr1	 55531370	 55534369	+	NA	NA	NA	NA	USP24	"hg19_refFlat_USP24:range=chr1:55534718-556807865'pad=0,hg19_refFlat_USP24:range=chr1:55534718-556807865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr1:55532032-55544931"	NA	inner
LNCA_21_P0010425	0.89629495	A	0.88272905	A	1.00944751399286	0	lncRNA	TCONS_00029622	NA	NA	NA	NA	XLOC_014278	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014278), lincRNA [TCONS_00029622]"	chr22:48736467-48736526	hs|22q13.32	Agilent_HUMAN_G3V2	TCONS_00029622	TCONS_00029622	chr22	 48736467	 48736526	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007757	3.1056674	P	3.5442998	P	0.737833705286875	0	lncRNA	TCONS_00020916	NA	NA	NA	NA	XLOC_010194	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010194), lincRNA [TCONS_00020916]"	chr12:109162368-109154809	hs|12q24.11	Agilent_HUMAN_G3V2	TCONS_00020916	TCONS_00020916	chr12	109154809	109162368	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45677_PI429285431	2.891438	A	3.736715	P	0.55660392991499	0	lncRNA	50052-1_{1..2732}	"gi|315013574|ref|NR_037644.1| Homo sapiens C10orf32-AS3MT readthrough (C10orf32-AS3MT), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|315013574|ref|NR_037644.1| Homo sapiens C10orf32-AS3MT readthrough (C10orf32-AS3MT), non-coding RNA"	Chr10	104613967	104616698	+	100528007	NR_037644.1	NA	NA	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50"	NA	inter
CUST_12567_PI429285431	2.4131043	A	2.7348597	A	0.800095768111168	0	lncRNA	14176-1_{1..2584}	lnc-C22orf26-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C22orf26-2:9	chr22	 46439820	 46442403	-	lnc-C22orf26-2	lnc-C22orf26-2:9	XLOC_014404	linc-WNT7B-2	C22orf26	NA	chr22:46446339-46450024	inter
CUST_34137_PI429285431	0.99501204	A	1.0124675	A	0.987973698159794	0	lncRNA	35657-1_{1..1843}	n340977|AK021785|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3443|NULL|-1.0715700|-0.3425432	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340977|AK021785|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3443|NULL|-1.0715700|-0.3425432	chr11	 15987995	 15989837	-	NA	NA	NA	NA	SOX6	NA	chr11:15987995-15999841	inner
LNCA_21_P0004677	0.9472517	A	2.309189	A	0.389059496563705	0	lncRNA	ENST00000430898	NA	NA	NA	NA	XLOC_005421	NA	ENST00000430898	NA	NA	"BROAD Institute lincRNA (XLOC_005421), lincRNA [TCONS_00011353]"	chr6:109081601-109090122	hs|6q21	Agilent_HUMAN_G3V2	ENST00000430898	ENST00000430898	chr6	109081601	109090122	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15526_PI429285431	5.2438836	P	5.5967717	P	0.783015027028543	0	lncRNA	17212-1_{1..3000}	lnc-C10orf11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C10orf11-1:1	chr10	 77190237	 77193236	+	lnc-C10orf11-1	lnc-C10orf11-1:1	XLOC_008522	linc-C10orf11-1	NA	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-19.80"	NA	inter
LNCA_21_P0003559	1.0977098	A	0.99086666	A	1.07686928498905	0	lncRNA	TCONS_00007956	NA	NA	NA	NA	XLOC_003425	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003425), lincRNA [TCONS_00007956]"	chr4:2765541-2770954	hs|4p16.3	Agilent_HUMAN_G3V2	TCONS_00007956	TCONS_00007956	chr4	  2765541	  2770954	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20355_PI429285431	0.9498761	A	1.376354	A	0.744076107796006	0	lncRNA	21996-1_{1..786}	lnc-FBN2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FBN2-5:1	chr5	128796118	128796903	-	lnc-FBN2-5	lnc-FBN2-5:1	ENSG00000249421.1	RP11-346A9.1	ADAMTS19	"hg19_refFlat_ADAMTS19:range=chr5:128796103-1290729115'pad=0,hg19_refFlat_ADAMTS19:range=chr5:128796103-1290729115'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90chr5:128796103-128806382"	NA	inner
CUST_48017_PI429285431	5.0814896	P	5.4045434	P	0.799376020011028	0	lncRNA	51900-1_{1..2339}	"gi|410173513|ref|XR_172255.1| PREDICTED: Homo sapiens FLJ44881 (FLJ44881), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|410173513|ref|XR_172255.1| PREDICTED: Homo sapiens FLJ44881 (FLJ44881), misc_RNA"	NA	NA	NA	NA	NA	XR_172255.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003514	0.92010033	A	0.9480796	A	0.980793096845495	0	lncRNA	ENST00000510922	NA	NA	NA	NA	XLOC_004091	NA	ENST00000510922	THC2658985	NA	"BROAD Institute lincRNA (XLOC_004091), lincRNA [TCONS_00007848]"	chr4:138612461-138611802	hs|4q28.3	Agilent_HUMAN_G3V2	ENST00000510922	ENST00000510922	chr4	138611802	138612461	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013680	0.9172486	A	0.9304608	A	0.990883807576074	0	lncRNA	ENST00000455051	NA	BC035187	NA	Hs.410860	XLOC_l2_015322	NA	ENST00000455051	THC2497998	NA	"BROAD Institute lincRNA (XLOC_l2_015322), lincRNA [TCONS_l2_00029539]"	chr9:106077499-106077440	hs|9q31.1	Agilent_HUMAN_G3V2	ENST00000455051	ENST00000455051	chr9	106077440	106077499	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18354_PI429285431	0.9252862	A	0.9117552	A	1.00942309490835	0	lncRNA	20082-1_{1..2755}	lnc-ZNF26-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZNF26-1:2	chr12	133489682	133492436	+	lnc-ZNF26-1	lnc-ZNF26-1:2	ENSG00000250790	RP11-46H11.3	ZNF605	"hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0,hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10chr12:133498019-133501318"	NA	inter
LNCA_21_P0002400	0.91107094	A	0.92204773	A	0.992420340562298	0	lncRNA	TCONS_00004138	NA	NA	NA	NA	XLOC_001980	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001980), lincRNA [TCONS_00004138]"	chr2:9344959-9344900	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_00004138	TCONS_00004138	chr2	  9344900	  9344959	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009379	0.9049478	A	0.9136404	A	0.993992864242578	0	lncRNA	TCONS_00025842	NA	NA	NA	NA	XLOC_012114	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012114), lincRNA [TCONS_00025842]"	chr17:13523362-13524998	hs|17p12	Agilent_HUMAN_G3V2	TCONS_00025842	TCONS_00025842	chr17	 13523362	 13524998	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008875	0.90277326	A	0.9106106	A	0.994582298841009	0	lncRNA	AK095618	NA	AK095618	NA	Hs.655120	XLOC_011780	NA	NA	THC2517462	NA	"BROAD Institute lincRNA (XLOC_011780), lincRNA [TCONS_00024252]"	chr16:72567107-72567166	hs|16q22.2	Agilent_HUMAN_G3V2	AK095618	AK095618	chr16	 72567107	 72567166	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006173	0.902136	A	0.90958965	A	0.994846846802553	0	lncRNA	BC036850	NA	BC036850	NA	Hs.553987	XLOC_007438	NA	NA	THC2611258	NA	"BROAD Institute lincRNA (XLOC_007438), lincRNA [TCONS_00016046]"	chr9:89613753-89613812	hs|9q21.33	Agilent_HUMAN_G3V2	BC036850	BC036850	chr9	 89613753	 89613812	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013420	0.89811265	A	0.9031582	A	0.996508799704263	0	lncRNA	BC040864	NA	BC040864	NA	Hs.566753	XLOC_l2_013795	NA	NA	THC2523560	NA	"BROAD Institute lincRNA (XLOC_l2_013795), lincRNA [TCONS_l2_00027334]"	chr7:42712438-42702087	hs|7p14.1	Agilent_HUMAN_G3V2	BC040864	BC040864	chr7	 42702087	 42712438	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49444_PI429285431	1.2669406	A	0.90000683	A	1.28960904703677	0	lncRNA	53243-2_{3001..3475}	hg19_lincRNAsTranscripts_TCONS_l2_00022686 range=chr5:180256963-180262942 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022686 range=chr5:180256963-180262942 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	180259963	180260437	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001752	8.192126	P	8.541122	P	0.785130295513958	0	lncRNA	TCONS_00002569	NA	NA	NA	NA	XLOC_001174	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001174), lincRNA [TCONS_00002569]"	chr1:207096931-207096872	hs|1q32.1	Agilent_HUMAN_G3V2	TCONS_00002569	TCONS_00002569	chr1	207096872	207096931	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26339_PI429285431	5.667861	P	6.085354	P	0.748724568164015	0	lncRNA	27846-1_{1..1563}	lnc-POM121L7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POM121L7-1:2	chr22	 21472941	 21474503	-	lnc-POM121L7-1	lnc-POM121L7-1:2	ENSG00000197210.6	KB-1592A4.15	NA	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0,hg19_refFlat_BCR:range=chr22:23523148-236577095'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10"	NA	inter
CUST_45124_PI429285431	0.90202194	A	0.89791137	A	1.00285329291962	0	lncRNA	49605-1_{1..3000}	"gi|211971087|ref|NR_024394.1| Homo sapiens uncharacterized LOC154822 (LOC154822), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|211971087|ref|NR_024394.1| Homo sapiens uncharacterized LOC154822 (LOC154822), non-coding RNA"	Chr7	158801045	158804044	+	154822	NR_024394.1	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80"	NA	inter
LNCA_19_P00319486	5.5016236	P	5.5009637	P	1.00045751245136	0	lncRNA	XR_109476	XR_109476	XR_109476	NA	Hs.729611	LOC100506854	NA	NA	THC2636278	NA	"PREDICTED: Homo sapiens hypothetical LOC100506854 (LOC100506854), miscRNA [XR_109476]"	chr18:37237395-37237454	hs|18q12.3	Agilent_HUMAN_G3V2	XR_109476	XR_109476	chr18	 37237395	 37237454	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21823_PI429285431	4.8962407	P	5.1873407	P	0.817278677083842	0	lncRNA	23433-1_{1..749}	lnc-RBP5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RBP5-1:2	chr12	  7282309	  7283057	-	lnc-RBP5-1	lnc-RBP5-1:2	ENSG00000256967.1	RP11-273B20.1	CLSTN3	NA	chr12:7282967-7292848	inter
LNCA_21_P0007741	1.3662715	A	0.9286612	A	1.35435908933004	0	lncRNA	TCONS_00020872	NA	NA	NA	NA	XLOC_010154	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010154), lincRNA [TCONS_00020872]"	chr12:93519962-93519903	hs|12q22	Agilent_HUMAN_G3V2	TCONS_00020872	TCONS_00020872	chr12	 93519903	 93519962	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013293	9.902011	P	9.565283	P	1.26288913929058	0	lncRNA	ENST00000442865	NA	NA	NA	NA	XLOC_l2_013765	NA	ENST00000442865	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013765), lincRNA [TCONS_l2_00027302]"	chr7:29638504-29638445	hs|7p14.3	Agilent_HUMAN_G3V2	ENST00000442865	ENST00000442865	chr7	 29638445	 29638504	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008578	3.2726498	P	2.0652225	A	2.30925469294465	0	lncRNA	BC034806	NA	BC034806	NA	Hs.572321	XLOC_011488	NA	NA	THC2607451	NA	"BROAD Institute lincRNA (XLOC_011488), lincRNA [TCONS_00023279]"	chr15:59060339-59060280	hs|15q21.3	Agilent_HUMAN_G3V2	BC034806	BC034806	chr15	 59060280	 59060339	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001309	2.5337622	A	0.8813531	A	3.14358135469321	0	lncRNA	TCONS_00000963	NA	NA	NA	NA	XLOC_000220	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000220), lincRNA [TCONS_00000963]"	chr1:59598400-59598459	hs|1p32.1	Agilent_HUMAN_G3V2	TCONS_00000963	TCONS_00000963	chr1	 59598400	 59598459	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005608	5.355805	P	6.0706034	P	0.609290267179813	0	lncRNA	TCONS_00014353	NA	NA	NA	NA	XLOC_006525	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006525), lincRNA [TCONS_00014353]"	chr7:93908293-93908234	hs|7q21.3	Agilent_HUMAN_G3V2	TCONS_00014353	TCONS_00014353	chr7	 93908234	 93908293	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013764	0.8964931	A	0.882745	A	1.00957500659952	0	lncRNA	TCONS_l2_00030216	NA	NA	NA	NA	XLOC_l2_015529	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015529), lincRNA [TCONS_l2_00030216]"	chrX:55379825-55379884	hs|Xp11.21	Agilent_HUMAN_G3V2	TCONS_l2_00030216	TCONS_l2_00030216	chrX	 55379825	 55379884	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010167	1.6046942	A	2.2073262	A	0.658551421693684	0	lncRNA	ENST00000411956	NA	NA	NA	NA	XLOC_013966	NA	ENST00000411956	NA	NA	"BROAD Institute lincRNA (XLOC_013966), lincRNA [TCONS_00028854]"	chr21:45596237-45596296	hs|21q22.3	Agilent_HUMAN_G3V2	ENST00000411956	ENST00000411956	chr21	 45596237	 45596296	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002657	6.162246	P	6.637355	P	0.719412434153718	0	lncRNA	TCONS_00005127	NA	NA	NA	NA	XLOC_002040	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002040), lincRNA [TCONS_00005127]"	chr2:30516348-30516289	hs|2p23.1	Agilent_HUMAN_G3V2	TCONS_00005127	TCONS_00005127	chr2	 30516289	 30516348	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010866	0.8956264	A	0.8840594	A	1.00804986073181	0	lncRNA	THC2673375	NA	NA	NA	NA	XLOC_l2_001929	NA	NA	THC2673375	NA	"BROAD Institute lincRNA (XLOC_l2_001929), lincRNA [TCONS_l2_00003496]"	chr10:043008966-043008907	hs|10q11.21	Agilent_HUMAN_G3V2	THC2673375	THC2673375	chr10	 43008907	 43008966	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007445	0.8943111	A	0.88436294	A	1.0069193680249	0	lncRNA	TCONS_00019971	NA	NA	NA	NA	XLOC_009249	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009249), lincRNA [TCONS_00019971]"	chr11:91575899-91589158	hs|11q14.3	Agilent_HUMAN_G3V2	TCONS_00019971	TCONS_00019971	chr11	 91575899	 91589158	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005338	0.89095795	A	0.8841085	A	1.0047589650311	0	lncRNA	ENST00000422084	NA	NA	NA	NA	XLOC_006634	NA	ENST00000422084	THC2705511	NA	"BROAD Institute lincRNA (XLOC_006634), lincRNA [TCONS_00013270]"	chr7:145373063-145373004	hs|7q35	Agilent_HUMAN_G3V2	ENST00000422084	ENST00000422084	chr7	145373004	145373063	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37494_PI429285431	0.8960604	A	0.89201146	A	1.00281045328506	0	lncRNA	38596-1_{1..991}	n345958|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1507|NULL|-1.3116400|-0.2525912	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345958|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1507|NULL|-1.3116400|-0.2525912	chr5	 52514225	 52515215	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_37871_PI429285431	0.946031	A	1.4300953	A	0.714960627130497	0	lncRNA	38963-1_{1..494}	n346407|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1957|NULL|-1.3108600|-0.1330196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346407|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1957|NULL|-1.3108600|-0.1330196	chr21	 47397217	 47397710	+	NA	NA	NA	NA	COL6A1	NA	chr21:47401663-47409441	inter
CUST_355_PI429285431	0.92543375	A	0.9300526	A	0.996803576618535	0	lncRNA	348-1_{1..3000}	"transcript_id ""ENST00000566942.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000566942.1"" | genecode_v17"	chr1	111196182	111199181	-	ENSG00000259834.1	ENST00000566942.1	RP11-284N8.3	RP11-284N8.3-001	NA	NA	NA	inter
LNCA_21_P0001676	3.8622365	P	3.2395678	P	1.53972072692529	0	lncRNA	THC2624247	NA	NA	NA	NA	XLOC_000166	NA	NA	THC2624247	NA	"BROAD Institute lincRNA (XLOC_000166), lincRNA [TCONS_00002016]"	chr1:045282630-045282689	hs|1p34.1	Agilent_HUMAN_G3V2	THC2624247	THC2624247	chr1	 45282630	 45282689	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008130	7.298106	P	7.082512	P	1.16118190873469	0	lncRNA	TCONS_00021939	NA	NA	NA	NA	XLOC_010533	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010533), lincRNA [TCONS_00021939]"	chr13:23551713-23551654	hs|13q12.12	Agilent_HUMAN_G3V2	TCONS_00021939	TCONS_00021939	chr13	 23551654	 23551713	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014415	4.6526613	P	4.5897408	P	1.04457819958673	0	lncRNA	XR_109681	XR_109681	XR_109681	NA	Hs.572852	LOC100505727	uncharacterized LOC100505727	NA	THC2607215	NA	"PREDICTED: Homo sapiens hypothetical LOC100505727 (LOC100505727), miscRNA [XR_109681]"	chr21:45906053-45906112	hs|21q22.3	Agilent_HUMAN_G3V2	XR_109681	XR_109681	chr21	 45906053	 45906112	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009442	7.957823	P	6.59321	P	2.57507240844664	0	lncRNA	XR_109463	XR_109463	XR_109463	NA	Hs.635114	LOC100505592	uncharacterized LOC100505592	NA	THC2668398	NA	"PREDICTED: Homo sapiens hypothetical LOC100505592 (LOC100505592), miscRNA [XR_109463]"	chr18:3478877-3478936	hs|18p11.31	Agilent_HUMAN_G3V2	XR_109463	XR_109463	chr18	  3478877	  3478936	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20647_PI429285431	0.9270699	A	0.92245877	A	1.00320130502578	0	lncRNA	22286-1_{1..559}	lnc-DIO2-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DIO2-5:2	chr14	 79540891	 79541449	-	lnc-DIO2-5	lnc-DIO2-5:2	ENSG00000258829.1	CTD-2243E23.1	NRXN3	NA	chr14:79530891-79551105	inner
CUST_41930_PI429285431	6.9460573	P	6.976845	P	0.978885687865987	0	lncRNA	43679-1_{1..99}	ENST00000384899 ncrna:miRNA chromosome:GRCh37:19:40788450:40788548:-1 gene:ENSG00000207631 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384899 ncrna:miRNA chromosome:GRCh37:19:40788450:40788548:-1 gene:ENSG00000207631 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 40788450	 40788548	-	ENSG00000207631	ENST00000384899	NA	NA	AKT2	NA	chr19:40778450-40791265	inner
CUST_32793_PI429285431	3.9180498	P	4.2237625	P	0.80904244599201	0	lncRNA	34428-1_{1..2341}	n339438|BC028229|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1870|NULL|-1.2783800|-0.1490607	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339438|BC028229|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1870|NULL|-1.2783800|-0.1490607	chr21	 18984090	 18986430	+	NA	NA	NA	NA	BTG3	NA	chr21:18974090-18985268	inner
LNCA_21_P0007826	0.91233075	A	1.5081748	A	0.661657238789769	0	lncRNA	TCONS_00021085	NA	NA	NA	NA	XLOC_009678	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009678), lincRNA [TCONS_00021085]"	chr12:16814876-16902754	hs|12p12.3	Agilent_HUMAN_G3V2	TCONS_00021085	TCONS_00021085	chr12	 16814876	 16902754	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33342_PI429285431	0.9224454	A	0.954808	A	0.977817682589485	0	lncRNA	34924-1_{1..1974}	n340061|AK055023|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2516|NULL|-0.7071830|-0.1655978	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340061|AK055023|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2516|NULL|-0.7071830|-0.1655978	chr10	 72689681	 72691654	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8929_PI429285431	6.071273	P	6.330112	P	0.835760221797302	0	lncRNA	10464-1_{1..2095}	lnc-ME3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ME3-1:1	chr11	 85997840	 85999934	-	lnc-ME3-1	lnc-ME3-1:1	ENSG00000247264	ENST00000501425	EED	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-29.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-38.12;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50chr11:85987840-85989781"	NA	inter
LNCA_21_P0003523	0.896051	A	0.89914495	A	0.997857735212355	0	lncRNA	ENST00000504755	NA	NA	NA	NA	XLOC_004120	NA	ENST00000504755	NA	NA	"BROAD Institute lincRNA (XLOC_004120), lincRNA [TCONS_00007872]"	chr4:150069020-150068961	hs|4q31.23	Agilent_HUMAN_G3V2	ENST00000504755	ENST00000504755	chr4	150068961	150069020	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013631	1.876715	A	2.8555555	A	0.50738736540212	0	lncRNA	TCONS_l2_00029282	NA	NA	NA	NA	XLOC_l2_015170	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015170), lincRNA [TCONS_l2_00029282]"	chr9:69655745-69655804	hs|9q21.11	Agilent_HUMAN_G3V2	TCONS_l2_00029282	TCONS_l2_00029282	chr9	 69655745	 69655804	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48872_PI429285431	5.941225	P	6.2253795	P	0.821222750280639	0	lncRNA	52708-1_{1..608}	hg19_lincRNAsTranscripts_TCONS_l2_00019220 range=chr3:36905809-36931593 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019220 range=chr3:36905809-36931593 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 36905809	 36906416	-	NA	NA	NA	NA	TRANK1	NA	chr3:36895809-36941593	inner
CUST_41434_PI429285431	1.2176627	A	1.0905771	A	1.09208534095827	0	lncRNA	42600-1_{1..83}	ENST00000584745 ncrna:miRNA chromosome:GRCh37:2:28219234:28219316:1 gene:ENSG00000265321 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584745 ncrna:miRNA chromosome:GRCh37:2:28219234:28219316:1 gene:ENSG00000265321 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 28219234	 28219316	+	ENSG00000265321	ENST00000584745	NA	NA	BRE	NA	chr2:28209234-28229316	inner
LNCA_21_P0002695	0.8902811	A	2.0363705	A	0.451848362658762	0	lncRNA	TCONS_00005376	NA	NA	NA	NA	XLOC_002560	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002560), lincRNA [TCONS_00005376]"	chr2:242998261-242998202	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_00005376	TCONS_00005376	chr2	242998202	242998261	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12333_PI429285431	0.9168866	A	0.8983837	A	1.01290782899423	0	lncRNA	13945-1_{1..889}	lnc-MBOAT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MBOAT2-1:1	chr2	  9250402	  9251290	-	lnc-MBOAT2-1	lnc-MBOAT2-1:1	XLOC_001979	linc-MBOAT2-1	NA	NA	NA	inter
LNCA_21_P0009461	5.016587	P	5.2269535	P	0.864317633511176	0	lncRNA	TCONS_00026291	NA	NA	NA	NA	XLOC_012633	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012633), lincRNA [TCONS_00026291]"	chr18:12892181-12892240	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_00026291	TCONS_00026291	chr18	 12892181	 12892240	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005016	0.89117175	A	0.8796673	A	1.00800615631047	0	lncRNA	TCONS_00012129	NA	NA	NA	NA	XLOC_005659	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005659), lincRNA [TCONS_00012129]"	chr6:27634821-27634762	hs|6p22.1	Agilent_HUMAN_G3V2	TCONS_00012129	TCONS_00012129	chr6	 27634762	 27634821	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39402_PI429285431	2.3061461	A	3.1443858	P	0.559325612312756	0	lncRNA	40362-1_{1..626}	n386586|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010pbg.1||-1.2343700|-0.3117600	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386586|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010pbg.1||-1.2343700|-0.3117600	chr1	149369293	149369918	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014775	3.6979206	P	3.8620677	P	0.892455970282474	0	lncRNA	XR_132550	XR_132550	XR_132550	NA	Hs.660492	LOC100505637	NA	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505637 (LOC100505637), miscRNA [XR_132550]"	chr8:66645485-66645426	hs|8q13.1	Agilent_HUMAN_G3V2	XR_132550	XR_132550	chr8	 66645426	 66645485	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004925	0.89666003	A	0.88316953	A	1.00939475831581	0	lncRNA	TCONS_00011926	NA	NA	NA	NA	XLOC_005436	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005436), lincRNA [TCONS_00011926]"	chr6:113518654-113518713	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00011926	TCONS_00011926	chr6	113518654	113518713	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010418	0.89642876	A	0.88364995	A	1.0088969407073	0	lncRNA	TCONS_00029821	NA	NA	NA	NA	XLOC_014257	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014257), lincRNA [TCONS_00029821]"	chr22:42844769-42844828	hs|22q13.2	Agilent_HUMAN_G3V2	TCONS_00029821	TCONS_00029821	chr22	 42844769	 42844828	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009054	6.8830395	P	6.9273877	P	0.96972783455068	0	lncRNA	TCONS_00024719	NA	NA	NA	NA	XLOC_012002	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012002), lincRNA [TCONS_00024719]"	chr16:72276980-72276921	hs|16q22.2	Agilent_HUMAN_G3V2	TCONS_00024719	TCONS_00024719	chr16	 72276921	 72276980	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31470_PI429285431	5.960346	P	4.5282683	P	2.69835039126915	0	lncRNA	33237-1_{1..1338}	n337950|BC039397|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|335|NULL|-0.7264920|-0.2595313	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337950|BC039397|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|335|NULL|-0.7264920|-0.2595313	chr15	 72114639	 72115976	-	NA	NA	NA	NA	MYO9A	NA	chr15:72118351-72125963	inter
CUST_7670_PI429285431	2.3135097	A	2.3385842	A	0.982769847525788	0	lncRNA	9303-1_{1..543}	lnc-JAM3-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-JAM3-3:3	chr11	133909657	133910199	+	lnc-JAM3-3	lnc-JAM3-3:3	ENSG00000204241	RP11-713P17.3	NA	NA	NA	inter
CUST_41679_PI429285431	0.89783704	A	0.8901014	A	1.00537633796774	0	lncRNA	43135-1_{1..63}	ENST00000578945 ncrna:miRNA chromosome:GRCh37:5:126596628:126596690:1 gene:ENSG00000265104 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578945 ncrna:miRNA chromosome:GRCh37:5:126596628:126596690:1 gene:ENSG00000265104 gene_biotype:miRNA transcript_biotype:miRNA	chr5	126596628	126596690	+	ENSG00000265104	ENST00000578945	NA	NA	NA	NA	NA	inter
LNCA_21_P0002863	5.018355	P	5.2594714	P	0.846090329305648	0	lncRNA	ENST00000464131	NA	NA	NA	NA	XLOC_003169	NA	ENST00000464131	NA	NA	"BROAD Institute lincRNA (XLOC_003169), lincRNA [TCONS_00005793]"	chr3:81296387-81296328	hs|3p12.2	Agilent_HUMAN_G3V2	ENST00000464131	ENST00000464131	chr3	 81296328	 81296387	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001899	0.9482214	A	1.4224522	A	0.71985048953782	0	lncRNA	ENST00000441383	NA	NA	NA	NA	XLOC_001620	NA	ENST00000441383	NA	NA	"BROAD Institute lincRNA (XLOC_001620), lincRNA [TCONS_00002974]"	chr2:108438526-108438585	hs|2q12.3	Agilent_HUMAN_G3V2	ENST00000441383	ENST00000441383	chr2	108438526	108438585	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26197_PI429285431	11.758361	P	11.417116	P	1.26684937315924	0	lncRNA	27708-1_{1..456}	lnc-LRCH4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRCH4-1:1	chr7	100201627	100202082	-	lnc-LRCH4-1	lnc-LRCH4-1:1	ENSG00000224729.4	RP13-530H6.2	FBXO24	"hg19_refFlat_PCOLCE:range=chr7:100200080-1002057265'pad=0,hg19_refFlat_PCOLCE:range=chr7:100200080-1002057265'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.50chr7:100191627-100198740"	NA	inner
CUST_46695_PI429285431	6.2761483	P	6.8683286	P	0.663339664617247	0	lncRNA	50855-2_{3001..4527}	"gi|397139912|ref|XR_109338.2| PREDICTED: Homo sapiens uncharacterized LOC100289580 (LOC100289580), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139912|ref|XR_109338.2| PREDICTED: Homo sapiens uncharacterized LOC100289580 (LOC100289580), misc_RNA"	NA	NA	NA	NA	NA	XR_109338.2	NA	NA	NA	"hg19_refFlat_PIEZO1:range=chr16:88782013-888513725'pad=0,hg19_refFlat_PIEZO1:range=chr16:88782013-888513725'pad=0 3'pad=0 strand=- repeatMasking=none,-105.20"	NA	Unknown
LNCA_21_P0012581	0.9243311	A	0.9718382	A	0.96760685820347	0	lncRNA	TCONS_l2_00020480	NA	NA	NA	NA	XLOC_l2_010636	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010636), lincRNA [TCONS_l2_00020480]"	chr4:37080182-37080241	hs|4p14	Agilent_HUMAN_G3V2	TCONS_l2_00020480	TCONS_l2_00020480	chr4	 37080182	 37080241	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19186_PI429285431	0.93018156	A	1.5650567	A	0.643996547898246	0	lncRNA	20856-1_{1..2048}	lnc-KB-1980E6.3.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KB-1980E6.3.1-1:2	chr8	103264027	103266074	+	lnc-KB-1980E6.3.1-1	lnc-KB-1980E6.3.1-1:2	ENSG00000246263.2	KB-431C1.4	UBR5	NA	chr8:103254266-103275561	inner
CUST_48668_PI429285431	6.798336	P	7.2872734	P	0.712549724658339	0	lncRNA	52512-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00014711 range=chr2:96497926-96517535 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014711 range=chr2:96497926-96517535 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 96497926	 96500925	-	NA	NA	NA	NA	LOC400986	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50chr2:96516920-96527535"	NA	inter
CUST_21483_PI429285431	2.629838	A	2.8406916	A	0.864025861485711	0	lncRNA	23101-1_{1..677}	lnc-JPH1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JPH1-2:1	chr8	 75545470	 75546146	-	lnc-JPH1-2	lnc-JPH1-2:1	ENSG00000254080.1	RP11-730G20.1	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90"	NA	inter
CUST_32193_PI429285431	0.9170698	A	1.1388744	A	0.857492168331184	0	lncRNA	33890-1_{1..982}	n338765|BC029476|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1186|NULL|-1.1614100|-0.3912230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338765|BC029476|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1186|NULL|-1.1614100|-0.3912230	chr13	 73462358	 73463339	+	NA	NA	NA	NA	PIBF1	"hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.60chr13:73452358-73473306"	NA	inner
LNCA_21_P0010012	3.423197	P	3.5024405	P	0.946553857126713	0	lncRNA	TCONS_00028330	NA	NA	NA	NA	XLOC_013681	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013681), lincRNA [TCONS_00028330]"	chr20:22434006-22433947	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028330	TCONS_00028330	chr20	 22433947	 22434006	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006221	2.6360457	A	3.1122577	P	0.718862623810334	0	lncRNA	TCONS_00016147	NA	NA	NA	NA	XLOC_007543	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007543), lincRNA [TCONS_00016147]"	chr9:122134679-122134738	hs|9q33.1	Agilent_HUMAN_G3V2	TCONS_00016147	TCONS_00016147	chr9	122134679	122134738	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3275280	1.5285593	A	1.5778198	A	0.966431577745696	0	lncRNA	XR_110857	XR_110857	XR_110857	   440742	Hs.629644	LOC440742	uncharacterized LOC440742	NA	THC2618205	NA	"PREDICTED: Homo sapiens hypothetical LOC440742 (LOC440742), miscRNA [XR_110857]"	chr1:244228266-244228325	hs|1q44	Agilent_HUMAN_G3V2	XR_110857	XR_110857	chr1	244228266	244228325	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43533_PI429285431	0.89762306	A	1.0613364	A	0.892724336008383	0	lncRNA	48317-1_{1..2533}	"gi|397138876|ref|XR_110483.3| PREDICTED: Homo sapiens uncharacterized LOC400768 (LOC400768), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397138876|ref|XR_110483.3| PREDICTED: Homo sapiens uncharacterized LOC400768 (LOC400768), misc_RNA"	Chr1	108963311	108965843	+	400768	XR_110483.4	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10"	NA	inter
CUST_12410_PI429285431	0.9061399	A	0.90297467	A	1.00219637876413	0	lncRNA	14023-1_{1..622}	lnc-AC018682.6.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC018682.6.1-1:5	chr2	 46668698	 46669319	+	lnc-AC018682.6.1-1	lnc-AC018682.6.1-1:5	XLOC_001455	linc-LOC388946	NA	NA	NA	inter
LNCA_21_P0003015	0.89254075	A	0.8792708	A	1.00924046028886	0	lncRNA	TCONS_00006168	NA	NA	NA	NA	XLOC_002775	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002775), lincRNA [TCONS_00006168]"	chr3:118215496-118215555	hs|3q13.32	Agilent_HUMAN_G3V2	TCONS_00006168	TCONS_00006168	chr3	118215496	118215555	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33784_PI429285431	5.776838	P	5.9801025	P	0.868582926791165	0	lncRNA	35337-1_{1..660}	n340572|AF222903|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3034|NULL|1.4768000|-0.0361838	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n340572|AF222903|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3034|NULL|1.4768000|-0.0361838	chr17	 26574469	 26575128	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003914	7.7223535	P	7.8158426	P	0.937253296584002	0	lncRNA	TCONS_00008687	NA	NA	NA	NA	XLOC_004202	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004202), lincRNA [TCONS_00008687]"	chr4:185192924-185192865	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00008687	TCONS_00008687	chr4	185192865	185192924	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001695	0.894376	A	0.87973475	A	1.01020021224866	0	lncRNA	TCONS_00002104	NA	NA	NA	NA	XLOC_000313	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000313), lincRNA [TCONS_00002104]"	chr1:96989592-96989651	hs|1p21.3	Agilent_HUMAN_G3V2	TCONS_00002104	TCONS_00002104	chr1	 96989592	 96989651	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49280_PI429285431	0.8976719	A	1.0984467	A	0.870083159257988	0	lncRNA	53099-1_{1..340}	hg19_lincRNAsTranscripts_TCONS_l2_00022723 range=chr5:741729-749419 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022723 range=chr5:741729-749419 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	   741729	   742068	-	NA	NA	NA	NA	ZDHHC11B	NA	chr5:732645-759419	inter
CUST_42555_PI429285431	0.9033129	A	0.8870642	A	1.0113264040394	0	lncRNA	45375-1_{1..97}	ENST00000516038 ncrna:snoRNA chromosome:GRCh37:9:120493653:120493749:-1 gene:ENSG00000251847 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516038 ncrna:snoRNA chromosome:GRCh37:9:120493653:120493749:-1 gene:ENSG00000251847 gene_biotype:snoRNA transcript_biotype:snoRNA	chr9	120493653	120493749	-	ENSG00000251847	ENST00000516038	NA	NA	NA	NA	NA	inter
CUST_13433_PI429285431	0.906853	A	0.90322524	A	1.00251773580259	0	lncRNA	15072-1_{1..290}	lnc-WDR7-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR7-5:1	chr18	 53763306	 53763595	+	lnc-WDR7-5	lnc-WDR7-5:1	XLOC_012686	linc-WDR7-2	NA	NA	NA	inter
CUST_43089_PI429285431	0.92361504	A	0.96368223	A	0.97260964943713	0	lncRNA	47349-1_{1..142}	ENST00000516898 ncrna:snRNA chromosome:GRCh37:17:11939813:11939954:-1 gene:ENSG00000252707 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516898 ncrna:snRNA chromosome:GRCh37:17:11939813:11939954:-1 gene:ENSG00000252707 gene_biotype:snRNA transcript_biotype:snRNA	chr17	 11939813	 11939954	-	ENSG00000252707	ENST00000516898	NA	NA	MAP2K4	NA	chr17:11929813-11949954	inner
LNCA_21_P0009682	0.9148598	A	1.8047158	A	0.539667981548973	0	lncRNA	TCONS_00026898	NA	NA	NA	NA	XLOC_012965	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012965), lincRNA [TCONS_00026898]"	chr19:11646655-11646714	hs|19p13.2	Agilent_HUMAN_G3V2	TCONS_00026898	TCONS_00026898	chr19	 11646655	 11646714	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002008	0.91257024	A	0.92394483	A	0.992146734306296	0	lncRNA	ENST00000456681	NA	NA	NA	NA	XLOC_001973	NA	ENST00000456681	THC2762961	NA	"BROAD Institute lincRNA (XLOC_001973), lincRNA [TCONS_00003194]"	chr2:8116845-8064426	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000456681	ENST00000456681	chr2	  8064426	  8116845	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7627_PI429285431	0.92266715	A	0.91415143	A	1.00592010225763	0	lncRNA	9259-1_{1..2727}	lnc-SLC16A3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SLC16A3-1:1	chr17	 80202849	 80205575	+	lnc-SLC16A3-1	lnc-SLC16A3-1:1	ENSG00000245410	AC132872.3	CSNK1D	"hg19_refFlat_CSNK1D:range=chr17:80202657-802312575'pad=0,hg19_refFlat_CSNK1D:range=chr17:80202657-802312575'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90chr17:80200537-80213317"	NA	inner
CUST_2014_PI429285431	0.91784936	A	1.0572824	A	0.907875868385488	0	lncRNA	2005-1_{1..584}	"transcript_id ""ENST00000515660.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000515660.1"" | genecode_v17"	chr4	188454032	188454615	-	ENSG00000250590.1	ENST00000515660.1	RP11-565A3.2	RP11-565A3.2-002	NA	NA	NA	inter
LNCA_21_P0006782	1.3690141	A	3.689917	P	0.200142172697895	0	lncRNA	ENST00000444965	NA	NA	NA	NA	XLOC_008907	NA	ENST00000444965	NA	NA	"BROAD Institute lincRNA (XLOC_008907), lincRNA [TCONS_00018025]"	chr10:94819502-94819443	hs|10q23.33	Agilent_HUMAN_G3V2	ENST00000444965	ENST00000444965	chr10	 94819443	 94819502	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013553	4.703735	P	4.5257683	P	1.13128835037184	0	lncRNA	ENST00000413145	XR_108927	XR_108927	NA	NA	XLOC_l2_014697	NA	ENST00000413145	THC2656391	NA	"PREDICTED: Homo sapiens hypothetical LOC100287623 (LOC100287623), miscRNA [XR_108927]"	chr9:6669653-6669712	hs|9p24.1	Agilent_HUMAN_G3V2	ENST00000413145	ENST00000413145	chr9	  6669653	  6669712	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009762	0.89350533	A	0.8936603	A	0.99989258875043	0	lncRNA	TCONS_00027298	NA	NA	NA	NA	XLOC_013298	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013298), lincRNA [TCONS_00027298]"	chr19:32562582-32562523	hs|19q13.11	Agilent_HUMAN_G3V2	TCONS_00027298	TCONS_00027298	chr19	 32562523	 32562582	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1474_PI429285431	5.588178	P	4.550605	P	2.05277143486247	0	lncRNA	1461-1_{1..976}	"transcript_id ""ENST00000474979.3"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000474979.3"" | genecode_v17"	chr3	141382041	141383016	+	ENSG00000242104.3	ENST00000474979.3	RP11-340E6.1	RP11-340E6.1-001	LOC646730	NA	chr3:141381934-141426234	inter
CUST_26540_PI429285431	0.89171934	A	0.8822988	A	1.00655118649934	0	lncRNA	28046-1_{1..439}	lnc-KIF3A-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KIF3A-1:4	chr5	131977438	131977876	-	lnc-KIF3A-1	lnc-KIF3A-1:4	ENSG00000223442.1	AC004041.2	RAD50	"hg19_refFlat_RAD50:range=chr5:131893017-1319780565'pad=0,hg19_refFlat_RAD50:range=chr5:131893017-1319780565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60chr5:131967438-131980313"	NA	inner
LNCA_21_P0003801	3.3759804	P	4.0541744	P	0.624947108658786	0	lncRNA	TCONS_00008665	NA	NA	NA	NA	XLOC_004180	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004180), lincRNA [TCONS_00008665]"	chr4:177567741-177567682	hs|4q34.3	Agilent_HUMAN_G3V2	TCONS_00008665	TCONS_00008665	chr4	177567682	177567741	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20362_PI429285431	0.9063885	A	0.90568537	A	1.00048749136238	0	lncRNA	22003-1_{1..221}	lnc-ASZ1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ASZ1-1:1	chr7	117204570	117204790	-	lnc-ASZ1-1	lnc-ASZ1-1:1	ENSG00000232661.1	AC000111.3	CFTR	NA	chr7:117194570-117214730	inner
CUST_51336_PI429285431	2.383684	A	2.344382	A	1.02761652829463	0	lncRNA	54936-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00008702 range=chr15:69349998-69384672 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008702 range=chr15:69349998-69384672 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 69349998	 69352997	+	NA	NA	NA	NA	NOX5	NA	chr15:69339998-69349501	inter
CUST_403_PI429201921	0.91038644	A	0.90869987	A	1.00116972483539	0	lncRNA	250-2_{3001..6000}	TC03003195.hg.1	TCONS_l2_00020255-XLOC_l2_010422 // Broad TUCP // linc-BCHE-2 chr3:-:166552808-166562744 // chr3 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr3:-:166552808-166562744	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00020255-XLOC_l2_010422	linc-BCHE-2	chr3	166552808	166562744	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002227	0.89707994	A	0.8835525	A	1.00942060405499	0	lncRNA	TCONS_00003711	NA	NA	NA	NA	XLOC_001499	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001499), lincRNA [TCONS_00003711]"	chr2:65158789-65158848	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00003711	TCONS_00003711	chr2	 65158789	 65158848	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46906_PI429285431	4.1756706	P	4.4782267	P	0.810814559445846	0	lncRNA	51026-1_{1..2891}	"gi|254826729|ref|NR_027487.2| Homo sapiens Rho GTPase activating protein 27 pseudogene (LOC146880), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254826729|ref|NR_027487.2| Homo sapiens Rho GTPase activating protein 27 pseudogene (LOC146880), transcript variant 1, non-coding RNA"	Chr17	 62774257	 62777147	-	146880	NR_027487.2	NA	NA	NA	NA	NA	inter
CUST_32881_PI429285431	1.1090689	A	0.89700437	A	1.1583446163862	0	lncRNA	34508-2_{3001..3825}	n339547|AK124746|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1989|NULL|-1.1499600|-0.2284620	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339547|AK124746|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1989|NULL|-1.1499600|-0.2284620	chr3	129225569	129226393	-	NA	NA	NA	NA	IFT122	"hg19_refFlat_IFT122:range=chr3:129159174-1292391085'pad=0,hg19_refFlat_IFT122:range=chr3:129159174-1292391085'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50chr3:129212569-129236395"	NA	inner
CUST_26191_PI429285431	6.088001	P	6.3457584	P	0.836387032846987	0	lncRNA	27702-1_{1..397}	lnc-YIF1A-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-YIF1A-6:1	chr11	 66013587	 66013983	-	lnc-YIF1A-6	lnc-YIF1A-6:1	ENSG00000255320.1	RP11-755F10.1	PACS1	NA	chr11:66003587-66012213	inter
LNCA_21_P0009262	1.6777848	A	0.8835904	A	1.73410877865052	0	lncRNA	TCONS_00025441	NA	NA	NA	NA	XLOC_012259	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012259), lincRNA [TCONS_00025441]"	chr17:55777844-55778621	hs|17q22	Agilent_HUMAN_G3V2	TCONS_00025441	TCONS_00025441	chr17	 55777844	 55778621	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004394	1.1270196	A	2.254967	A	0.457566266416217	0	lncRNA	TCONS_00010344	NA	NA	NA	NA	XLOC_004831	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004831), lincRNA [TCONS_00010344]"	chr5:55831072-55831013	hs|5q11.2	Agilent_HUMAN_G3V2	TCONS_00010344	TCONS_00010344	chr5	 55831013	 55831072	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6631_PI429285431	3.218564	P	3.4812028	P	0.833561875556789	0	lncRNA	6577-1_{1..579}	"transcript_id ""ENST00000589201.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589201.1"" | genecode_v17"	chr20	  5482342	  5482920	-	ENSG00000205181.5	ENST00000589201.1	LINC00654	LINC00654-003	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10"	NA	inter
CUST_23926_PI429285431	3.0041947	A	2.0965867	A	1.87593260716673	0	lncRNA	25483-1_{1..387}	lnc-LYSMD2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LYSMD2-1:1	chr15	 52007368	 52007754	-	lnc-LYSMD2-1	lnc-LYSMD2-1:1	ENSG00000259296.1	RP11-313P18.1	LYSMD2	NA	chr15:52015261-52017417	inner
CUST_18902_PI429285431	2.6555483	A	0.928542	A	3.31040172023366	0	lncRNA	20594-1_{1..3000}	lnc-APBA2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-APBA2-1:2	chr15	 29001803	 29004802	+	lnc-APBA2-1	lnc-APBA2-1:2	ENSG00000248334	AC055876.5	NA	NA	NA	inter
CUST_21025_PI429285431	2.8109531	A	3.5926523	P	0.581681287907473	0	lncRNA	22653-1_{1..1845}	lnc-CTU2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CTU2-1:1	chr16	 88785023	 88786867	+	lnc-CTU2-1	lnc-CTU2-1:1	ENSG00000260121.1	RP5-1142A6.9	FAM38A	"hg19_refFlat_PIEZO1:range=chr16:88782013-888513725'pad=0,hg19_refFlat_PIEZO1:range=chr16:88782013-888513725'pad=0 3'pad=0 strand=- repeatMasking=none,-98.60chr16:88781746-88796867"	NA	inner
CUST_42364_PI429285431	4.72121	P	5.416396	P	0.617629685291052	0	lncRNA	45037-1_{1..64}	ENST00000459584 ncrna:snoRNA chromosome:GRCh37:17:27050447:27050510:1 gene:ENSG00000238649 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459584 ncrna:snoRNA chromosome:GRCh37:17:27050447:27050510:1 gene:ENSG00000238649 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 27050447	 27050510	+	ENSG00000238649	ENST00000459584	NA	NA	RPL23A	NA	chr17:27047000-27051374	inner
CUST_18233_PI429285431	2.1238546	A	0.89558995	A	2.34285009872593	0	lncRNA	19967-2_{3001..3543}	lnc-FAM72B-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-FAM72B-2:2	chr1	120933521	120934063	+	lnc-FAM72B-2	lnc-FAM72B-2:2	ENSG00000233029	RP11-439A17.9	FCGR1B	NA	chr1:120926908-120935944	inner
CUST_35692_PI429285431	0.90008074	A	0.8880264	A	1.00839043582804	0	lncRNA	37111-1_{1..2391}	n342852|AK096550|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5356|NULL|-0.8469550|-0.4035672	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342852|AK096550|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5356|NULL|-0.8469550|-0.4035672	chr9	 20330162	 20332552	-	NA	NA	NA	NA	MLLT3	NA	chr9:20331406-20342553	inter
LNCA_21_P0003355	3.300549	P	3.4801817	P	0.882927754868531	0	lncRNA	ENST00000515422	NA	NA	NA	NA	XLOC_003519	NA	ENST00000515422	NA	NA	"BROAD Institute lincRNA (XLOC_003519), lincRNA [TCONS_00007518]"	chr4:40267808-40267867	hs|4p14	Agilent_HUMAN_G3V2	ENST00000515422	ENST00000515422	chr4	 40267808	 40267867	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002774	0.89111924	A	0.9940502	A	0.931139378328516	0	lncRNA	ENST00000482351	NA	NA	NA	NA	XLOC_002852	NA	ENST00000482351	THC2664453	NA	"BROAD Institute lincRNA (XLOC_002852), lincRNA [TCONS_00005605]"	chr3:145675549-145675608	hs|3q24	Agilent_HUMAN_G3V2	ENST00000482351	ENST00000482351	chr3	145675549	145675608	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44018_PI429285431	6.977383	P	4.9078646	P	4.19746530405908	0	lncRNA	48704-2_{3001..4390}	"gi|371118720|ref|NR_045768.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|371118720|ref|NR_045768.1| Homo sapiens activating transcription factor 2 (ATF2), transcript variant 7, non-coding RNA"	Chr2	175939978	175941367	-	1386	NR_045768.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0010689	3.008548	P	3.9864147	P	0.507729960748557	0	lncRNA	ENST00000433695	NA	NA	NA	NA	XLOC_l2_000018	NA	ENST00000433695	THC2653369	NA	"BROAD Institute lincRNA (XLOC_l2_000018), lincRNA [TCONS_l2_00001954]"	chr1:999932-1001231	hs|1p36.33	Agilent_HUMAN_G3V2	ENST00000433695	ENST00000433695	chr1	   999932	  1001231	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007347	5.458478	P	5.956092	P	0.708277196730317	0	lncRNA	THC2677865	NA	NA	NA	NA	XLOC_009428	NA	NA	THC2677865	NA	"BROAD Institute lincRNA (XLOC_009428), lincRNA [TCONS_00019627]"	chr11:044994528-044994469	hs|11p11.2	Agilent_HUMAN_G3V2	THC2677865	THC2677865	chr11	 44994469	 44994528	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17027_PI429285431	0.9099345	A	0.89605665	A	1.0096658076656	0	lncRNA	18738-1_{1..737}	lnc-IL1R1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL1R1-1:1	chr2	102673858	102674594	+	lnc-IL1R1-1	lnc-IL1R1-1:1	XLOC_001596	linc-IL1R1	NA	NA	NA	inter
LNCA_21_P0007737	0.89130247	A	0.8803145	A	1.00764535806361	0	lncRNA	TCONS_00020867	NA	NA	NA	NA	XLOC_010149	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010149), lincRNA [TCONS_00020867]"	chr12:91155795-91155736	hs|12q21.33	Agilent_HUMAN_G3V2	TCONS_00020867	TCONS_00020867	chr12	 91155736	 91155795	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32613_PI429285431	1.4176348	A	1.5934552	A	0.885263963552492	0	lncRNA	34272-1_{1..1055}	n339235|BC009905|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1667|NULL|-1.1968600|-0.3269249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339235|BC009905|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1667|NULL|-1.1968600|-0.3269249	chr3	  7648576	  7649630	-	NA	NA	NA	NA	GRM7	NA	chr3:7638576-7659585	inner
CUST_38305_PI429285431	5.6315236	P	5.817067	P	0.879317813053611	0	lncRNA	39356-1_{1..2100}	n381982|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001unz.1||0.5417040|-0.2991237	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n381982|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001unz.1||0.5417040|-0.2991237	chr13	 21872311	 21874410	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22388_PI429285431	1.1730165	A	0.907055	A	1.20243716003181	0	lncRNA	23978-1_{1..976}	lnc-MARCH4-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MARCH4-2:4	chr2	217351849	217352824	-	lnc-MARCH4-2	lnc-MARCH4-2:4	ENSG00000241520.1	AC098820.4	SMARCAL1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10chr2:217341849-217347776"	NA	inter
CUST_31566_PI429285431	0.9154826	A	0.9139891	A	1.00103575133449	0	lncRNA	33323-1_{1..2047}	n338059|AK123431|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|446|NULL|-0.9022040|-0.1616939	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338059|AK123431|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|446|NULL|-0.9022040|-0.1616939	chr22	 36956916	 36958962	-	NA	NA	NA	NA	CACNG2	NA	chr22:36956916-36968962	inner
LNCA_21_P0006948	0.8963859	A	0.88116914	A	1.0106032747693	0	lncRNA	TCONS_00018404	NA	NA	NA	NA	XLOC_008689	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008689), lincRNA [TCONS_00018404]"	chr10:2616420-2616361	hs|10p15.3	Agilent_HUMAN_G3V2	TCONS_00018404	TCONS_00018404	chr10	  2616361	  2616420	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001577	0.89732945	A	1.8733103	A	0.508394084906584	0	lncRNA	TCONS_00001668	NA	NA	NA	NA	XLOC_001006	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001006), lincRNA [TCONS_00001668]"	chr1:147209694-147209635	hs|1q21.2	Agilent_HUMAN_G3V2	TCONS_00001668	TCONS_00001668	chr1	147209635	147209694	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009254	1.0483217	A	0.921679	A	1.09175012780023	0	lncRNA	TCONS_00025425	NA	NA	NA	NA	XLOC_012230	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012230), lincRNA [TCONS_00025425]"	chr17:47330314-47330373	hs|17q21.32	Agilent_HUMAN_G3V2	TCONS_00025425	TCONS_00025425	chr17	 47330314	 47330373	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_368_PI429201921	0.908771	A	0.8945443	A	1.00990997881394	0	lncRNA	235-1_{1..3000}	TC22001079.hg.1	TCONS_l2_00018250-XLOC_l2_009363 // Broad TUCP // linc-FBXO7 chr22:+:32772650-32780330 // chr22 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00018251-XLOC_l2_009363 // Broad TUCP // linc-FBXO7 chr22:+:32779772-32781618 // chr22 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr22:+:32772650-32780330	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00018250-XLOC_l2_009363	linc-FBXO7	chr22	 32772650	 32780330	+	NA	NA	NA	NA	JUN	NA	chr1:59246463-59249785	Unknown
LNCA_21_P0007192	0.88702464	A	0.8832787	A	1.00259986154324	0	lncRNA	TCONS_00019275	NA	NA	NA	NA	XLOC_009108	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009108), lincRNA [TCONS_00019275]"	chr11:38210868-38211384	hs|11p12	Agilent_HUMAN_G3V2	TCONS_00019275	TCONS_00019275	chr11	 38210868	 38211384	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_97_PI429201921	0.9208252	A	1.2207506	A	0.812294398022353	0	lncRNA	100-1_{1..2833}	TC20001601.hg.1	TCONS_00028055-XLOC_013765 // Rinn lincRNAs // linc-NCOA5-2 chr20:-:44797042-44799876 // chr20 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr20:-:44797042-44799876	NA	Affy_HUMAN_HTA2.0	TCONS_00028055-XLOC_013765	linc-NCOA5-2	chr20	 44797042	 44799876	-	NA	NA	NA	NA	LOC100288646	NA	chr1:327463-342507	Unknown
CUST_42861_PI429285431	5.452589	P	6.185175	P	0.601824189457102	0	lncRNA	45912-1_{1..142}	ENST00000384688 ncrna:snoRNA chromosome:GRCh37:6:11710052:11710193:1 gene:ENSG00000207419 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384688 ncrna:snoRNA chromosome:GRCh37:6:11710052:11710193:1 gene:ENSG00000207419 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	 11710052	 11710193	+	ENSG00000207419	ENST00000384688	NA	NA	C6orf105	NA	chr6:11713888-11720193	inter
LNCA_21_P0002650	7.997503	P	8.082042	P	0.943085842227712	0	lncRNA	TCONS_00004167	NA	NA	NA	NA	XLOC_002010	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002010), lincRNA [TCONS_00004167]"	chr2:20739256-20739197	hs|2p24.1	Agilent_HUMAN_G3V2	TCONS_00004167	TCONS_00004167	chr2	 20739197	 20739256	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21312_PI429285431	1.3324435	A	0.9644506	A	1.29055613916417	0	lncRNA	22935-1_{1..569}	lnc-C2orf42-3:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:15	chr2	 70313475	 70314043	-	lnc-C2orf42-3	lnc-C2orf42-3:15	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
CUST_13464_PI429285431	0.9495443	A	1.0093842	A	0.959370577518418	0	lncRNA	15102-1_{1..391}	lnc-MMP2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MMP2-1:1	chr16	 55461669	 55462059	+	lnc-MMP2-1	lnc-MMP2-1:1	XLOC_011731	linc-MMP2	NA	NA	NA	inter
CUST_9132_PI429285431	0.91995424	A	1.246585	A	0.797396534233408	0	lncRNA	10651-1_{1..2909}	lnc-JAM2-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-JAM2-6:1	chr21	 25860427	 25863335	+	lnc-JAM2-6	lnc-JAM2-6:1	ENSG00000237484	AP000476.1	NA	NA	NA	inter
CUST_46364_PI429285431	1.1055039	A	0.92566246	A	1.13275938206195	0	lncRNA	50586-1_{1..416}	"gi|310123142|ref|XR_110233.1| PREDICTED: Homo sapiens uncharacterized LOC100506792, transcript variant 1 (LOC100506792), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310123142|ref|XR_110233.1| PREDICTED: Homo sapiens uncharacterized LOC100506792, transcript variant 1 (LOC100506792), misc_RNA"	Chr14	 90095265	 90095680	-	100506792	XR_110233.1	NA	NA	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70"	NA	inter
LNCA_21_P0009285	7.0819955	P	6.9305205	P	1.11070446722703	0	lncRNA	TCONS_00025519	NA	NA	NA	NA	XLOC_012332	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012332), lincRNA [TCONS_00025519]"	chr17:76987413-76987472	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_00025519	TCONS_00025519	chr17	 76987413	 76987472	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1736_PI429285431	0.9177082	A	0.9085176	A	1.0063907728776	0	lncRNA	1722-1_{1..299}	"transcript_id ""ENST00000505967.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000505967.1"" | genecode_v17"	chr4	 34670388	 34670686	+	ENSG00000250597.1	ENST00000505967.1	RP11-725M22.1	RP11-725M22.1-003	NA	NA	NA	inter
LNCA_21_P0002974	0.90372187	A	0.9115249	A	0.994605952158916	0	lncRNA	TCONS_00006087	NA	NA	NA	NA	XLOC_002698	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002698), lincRNA [TCONS_00006087]"	chr3:70669256-70669315	hs|3p13	Agilent_HUMAN_G3V2	TCONS_00006087	TCONS_00006087	chr3	 70669256	 70669315	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002757	0.9030291	A	0.9105229	A	0.994819160740033	0	lncRNA	XR_112513	XR_112513	XR_112513	NA	Hs.563132	LOC728290	uncharacterized LOC728290	ENST00000466625	THC2709952	NA	"PREDICTED: Homo sapiens hypothetical LOC728290 (LOC728290), miscRNA [XR_112513]"	chr3:81144379-81144438	hs|3p12.2	Agilent_HUMAN_G3V2	XR_112513	XR_112513	chr3	 81144379	 81144438	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012234	2.7658122	A	2.6716502	A	1.06744519456408	0	lncRNA	XR_109675	XR_109675	XR_109675	NA	NA	LOC100506471	uncharacterized LOC100506471	ENST00000419664	THC2740149	NA	"PREDICTED: Homo sapiens hypothetical LOC100506471 (LOC100506471), miscRNA [XR_109675]"	chr21:40378668-40378609	hs|21q22.2	Agilent_HUMAN_G3V2	XR_109675	XR_109675	chr21	 40378609	 40378668	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011670	2.0681055	A	0.90132475	A	2.24510162446983	0	lncRNA	TCONS_l2_00012272	NA	NA	NA	NA	XLOC_l2_006578	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006578), lincRNA [TCONS_l2_00012272]"	chr19:7984139-7984198	hs|19p13.2	Agilent_HUMAN_G3V2	TCONS_l2_00012272	TCONS_l2_00012272	chr19	  7984139	  7984198	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001697	0.8911068	A	1.8993244	A	0.497160092607947	0	lncRNA	TCONS_00002109	NA	NA	NA	NA	XLOC_000329	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000329), lincRNA [TCONS_00002109]"	chr1:106993439-106994581	hs|1p21.1	Agilent_HUMAN_G3V2	TCONS_00002109	TCONS_00002109	chr1	106993439	106994581	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007155	1.9968314	A	3.723701	P	0.30210676595414	0	lncRNA	ENST00000415809	NA	NA	NA	NA	XLOC_009363	NA	ENST00000415809	THC2656077	NA	"BROAD Institute lincRNA (XLOC_009363), lincRNA [TCONS_00019165]"	chr11:3875607-3875548	hs|11p15.4	Agilent_HUMAN_G3V2	ENST00000415809	ENST00000415809	chr11	  3875548	  3875607	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_412_PI429285431	0.89243543	A	2.6241863	A	0.301086333538248	0	lncRNA	404-1_{1..736}	"transcript_id ""ENST00000421640.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000421640.1"" | genecode_v17"	chr1	143391568	143392303	+	ENSG00000238261.4	ENST00000421640.1	RP11-435B5.5	RP11-435B5.5-007	NA	NA	NA	inter
CUST_16884_PI429285431	7.5467367	P	8.43463	P	0.540402667076762	0	lncRNA	18593-1_{1..463}	lnc-NACA2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NACA2-2:2	chr17	 59476600	 59477062	-	lnc-NACA2-2	lnc-NACA2-2:2	XLOC_012542	linc-APPBP2-2	BCAS3	NA	chr17:59466600-59470199	inter
CUST_42072_PI429285431	6.3627944	P	6.7056823	P	0.78846143654816	0	lncRNA	43988-1_{1..76}	ENST00000579857 ncrna:miRNA chromosome:GRCh37:10:131641563:131641638:-1 gene:ENSG00000266676 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579857 ncrna:miRNA chromosome:GRCh37:10:131641563:131641638:-1 gene:ENSG00000266676 gene_biotype:miRNA transcript_biotype:miRNA	chr10	131641563	131641638	-	ENSG00000266676	ENST00000579857	NA	NA	EBF3	NA	chr10:131633547-131651638	inner
LNCA_21_P0007208	0.89484197	A	0.87994874	A	1.0103766684458	0	lncRNA	ENST00000532307	XR_111174	XR_111174	NA	NA	XLOC_009123	NA	ENST00000532307	THC2703816	NA	"PREDICTED: Homo sapiens hypothetical LOC100507384 (LOC100507384), miscRNA [XR_111174]"	chr11:45745101-45745749	hs|11p11.2	Agilent_HUMAN_G3V2	ENST00000532307	ENST00000532307	chr11	 45745101	 45745749	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47550_PI429285431	7.553971	P	7.643747	P	0.939668635509244	0	lncRNA	51559-1_{1..3000}	"gi|225543350|ref|NR_027383.1| Homo sapiens A kinase (PRKA) anchor protein 17A (AKAP17A), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225543350|ref|NR_027383.1| Homo sapiens A kinase (PRKA) anchor protein 17A (AKAP17A), transcript variant 2, non-coding RNA"	ChrY	  1660486	  1663485	+	8227	NR_027383.1	NA	NA	NA	NA	NA	inter
CUST_8607_PI429285431	2.4728963	A	2.0170026	A	1.37163222088562	0	lncRNA	10161-1_{1..576}	lnc-PCYOX1L-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PCYOX1L-2:10	chr5	148801044	148801619	+	lnc-PCYOX1L-2	lnc-PCYOX1L-2:10	ENSG00000249669	RP11-394O4.2	NA	NA	NA	inter
CUST_31505_PI429285431	1.1565027	A	1.9933254	A	0.559875245964962	0	lncRNA	33266-1_{1..2732}	n337989|AK127877|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|375|NULL|-0.9019710|-0.1575623	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n337989|AK127877|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|375|NULL|-0.9019710|-0.1575623	chr15	 73075175	 73077906	+	NA	NA	NA	NA	ADPGK	"hg19_refFlat_ADPGK:range=chr15:73044682-730760325'pad=0,hg19_refFlat_ADPGK:range=chr15:73044682-730760325'pad=0 3'pad=0 strand=- repeatMasking=none,-109.40chr15:73065175-73076126"	NA	inter
LNCA_33_P3435493	0.8967739	A	0.8846437	A	1.00844346055434	0	lncRNA	XR_110483	XR_110483	XR_110483	   400768	Hs.730312	LOC400768	uncharacterized LOC400768	NA	THC2492610	NA	"PREDICTED: Homo sapiens hypothetical LOC400768 (LOC400768), miscRNA [XR_110483]"	chr1:108975729-108975788	hs|1p13.3	Agilent_HUMAN_G3V2	XR_110483	XR_110483	chr1	108975729	108975788	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008193	0.8952801	A	0.8850672	A	1.00710415849406	0	lncRNA	TCONS_00022074	NA	NA	NA	NA	XLOC_010677	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010677), lincRNA [TCONS_00022074]"	chr13:85470457-85470398	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00022074	TCONS_00022074	chr13	 85470398	 85470457	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21865_PI429285431	2.3315544	A	2.139562	A	1.14234022907739	0	lncRNA	23475-1_{1..477}	lnc-TYW5-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-TYW5-1:3	chr2	200773826	200774302	-	lnc-TYW5-1	lnc-TYW5-1:3	ENSG00000232732.3	AC073043.1	C2orf69	NA	chr2:200775979-200783881	inter
CUST_32087_PI429285431	0.90521383	A	0.8996467	A	1.00386629537419	0	lncRNA	33793-1_{1..935}	n338650|CR600834|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1064|NULL|-1.3620200|-0.3756259	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338650|CR600834|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1064|NULL|-1.3620200|-0.3756259	chr13	 35935611	 35936545	+	NA	NA	NA	NA	NBEA	NA	chr13:35925611-35946546	inner
CUST_9986_PI429285431	0.91833854	A	0.9715199	A	0.963808640538078	0	lncRNA	11511-1_{1..314}	lnc-MANEA-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MANEA-5:1	chr6	 93695712	 93696025	+	lnc-MANEA-5	lnc-MANEA-5:1	XLOC_005389	linc-MANEA-5	NA	NA	NA	inter
LNCA_21_P0004647	3.201768	P	3.6127412	P	0.752115847127609	0	lncRNA	ENST00000427609	NA	NA	NA	NA	XLOC_005276	NA	ENST00000427609	NA	NA	"BROAD Institute lincRNA (XLOC_005276), lincRNA [TCONS_00011299]"	chr6:36912392-36912451	hs|6p21.2	Agilent_HUMAN_G3V2	ENST00000427609	ENST00000427609	chr6	 36912392	 36912451	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013248	5.0585876	P	5.264109	P	0.867225209299809	0	lncRNA	TCONS_l2_00026046	NA	NA	NA	NA	XLOC_l2_013485	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013485), lincRNA [TCONS_l2_00026046]"	chr7:76629664-76631492	hs|7q11.23	Agilent_HUMAN_G3V2	TCONS_l2_00026046	TCONS_l2_00026046	chr7	 76629664	 76631492	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19414_PI429285431	0.92508507	A	0.91970783	A	1.00373417346288	0	lncRNA	21075-1_{1..894}	lnc-PPIAL4B-2:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-PPIAL4B-2:13	chr1	144491655	144492548	-	lnc-PPIAL4B-2	lnc-PPIAL4B-2:13	ENSG00000236943.1	AL592284.1	NA	NA	NA	inter
CUST_37538_PI429285431	7.811157	P	7.4312553	P	1.30125318975529	0	lncRNA	38644-1_{1..1048}	n346015|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1565|NULL|-1.4047700|-0.1046660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346015|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1565|NULL|-1.4047700|-0.1046660	chrX	  3735579	  3736626	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16572_PI429285431	0.9237811	A	1.9575227	A	0.488441741071802	0	lncRNA	18273-1_{1..2213}	lnc-RAMP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAMP3-1:1	chr7	 45229967	 45232179	+	lnc-RAMP3-1	lnc-RAMP3-1:1	XLOC_006072	linc-ADCY1-4	RAMP3	NA	chr7:45219967-45223849	inter
CUST_33448_PI429285431	0.9186947	A	0.9110141	A	1.00533798276687	0	lncRNA	35026-1_{1..3000}	n340183|BC041657|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2644|NULL|1.0112200|-0.2585018	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340183|BC041657|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2644|NULL|1.0112200|-0.2585018	chr4	 96470279	 96473278	+	NA	NA	NA	NA	UNC5C	NA	chr4:96460279-96470361	inner
CUST_44857_PI429285431	1.3281647	A	0.925144	A	1.32227357718165	0	lncRNA	49383-1_{1..2807}	"gi|341915360|ref|XR_132743.1| PREDICTED: Homo sapiens KIF25 antisense RNA 1 (KIF25-AS1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|341915360|ref|XR_132743.1| PREDICTED: Homo sapiens KIF25 antisense RNA 1 (KIF25-AS1), misc_RNA"	NA	NA	NA	NA	NA	XR_132743.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014780	6.2293253	P	5.887471	P	1.26738452045117	0	lncRNA	XR_132559	XR_132559	XR_132559	NA	NA	LOC100652747	uncharacterized LOC100652747	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652747 (LOC100652747), miscRNA [XR_132559]"	chr9:27109226-27109167	hs|9p21.2	Agilent_HUMAN_G3V2	XR_132559	XR_132559	chr9	 27109167	 27109226	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8296_PI429285431	0.9154935	A	0.92454445	A	0.993745997719393	0	lncRNA	9881-1_{1..2265}	lnc-ALG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ALG1-1:1	chr16	  5092096	  5094360	+	lnc-ALG1-1	lnc-ALG1-1:1	ENSG00000250792	ENST00000513860	C16orf89	"hg19_refFlat_NAGPA:range=chr16:5075479-50839155'pad=0,hg19_refFlat_NAGPA:range=chr16:5075479-50839155'pad=0 3'pad=0 strand=- repeatMasking=none,-98.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-32.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_EFCAB5:range=chr17:28270646-284007085'pad=0,hg19_refFlat_EFCAB5:range=chr17:28270646-284007085'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.50chr16:5094123-5104000"	NA	inter
CUST_47888_PI429285431	5.9330053	P	6.646232	P	0.609954401526285	0	lncRNA	51783-1_{1..1954}	"gi|410171719|ref|XR_171348.1| PREDICTED: Homo sapiens uncharacterized LOC729770 (LOC729770), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171719|ref|XR_171348.1| PREDICTED: Homo sapiens uncharacterized LOC729770 (LOC729770), misc_RNA"	NA	NA	NA	NA	NA	XR_171348.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009660	0.89685893	A	0.9000403	A	0.997797271928111	0	lncRNA	ENST00000420038	NA	NA	NA	NA	XLOC_012971	NA	ENST00000420038	THC2646669	NA	"BROAD Institute lincRNA (XLOC_012971), lincRNA [TCONS_00026825]"	chr19:12565764-12571399	hs|19p13.2	Agilent_HUMAN_G3V2	ENST00000420038	ENST00000420038	chr19	 12565764	 12571399	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17512_PI429285431	1.3637085	A	0.89401805	A	1.38481230576632	0	lncRNA	19237-1_{1..483}	lnc-GCNT7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-GCNT7-2:1	chr20	 55306089	 55306571	-	lnc-GCNT7-2	lnc-GCNT7-2:1	XLOC_013810	linc-GCNT7-2	NA	NA	NA	inter
CUST_32382_PI429285431	0.9241085	A	0.91147107	A	1.00879807652837	0	lncRNA	34059-1_{1..562}	n338973|AF086278|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1401|NULL|-1.1773400|-0.2198355	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338973|AF086278|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1401|NULL|-1.1773400|-0.2198355	chr2	144695634	144696195	-	NA	NA	NA	NA	GTDC1	NA	chr2:144703581-144706173	inter
LNCA_21_P0011104	5.2165427	P	5.56415	P	0.785886404969413	0	lncRNA	TCONS_l2_00006386	NA	NA	NA	NA	XLOC_l2_003475	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003475), lincRNA [TCONS_l2_00006386]"	chr12:102718524-102718465	hs|12q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00006386	TCONS_l2_00006386	chr12	102718465	102718524	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29668_PI429285431	7.6939974	P	6.4764547	P	2.32550283719156	0	lncRNA	31430-1_{1..238}	n333304|AY123976|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084572|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084572|0.5135090|-0.1965516	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333304|AY123976|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084572|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084572|0.5135090|-0.1965516	chr3	119545621	119545858	-	NA	NA	NA	NA	GSK3B	NA	chr3:119540800-119592423	inner
CUST_26050_PI429285431	4.5804353	P	4.578685	P	1.00121395175378	0	lncRNA	27565-1_{1..358}	lnc-TMED5-1:28	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMED5-1:28	chr1	 93775272	 93775629	-	lnc-TMED5-1	lnc-TMED5-1:28	ENSG00000223745.1	RP4-717I23.3	NA	"hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0,hg19_refFlat_CCDC18:range=chr1:93648919-937440345'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10"	NA	inter
LNCA_21_P0002804	5.07395	P	5.6386633	P	0.676089759302956	0	lncRNA	ENST00000468232	NA	NA	NA	NA	XLOC_002919	NA	ENST00000468232	NA	NA	"BROAD Institute lincRNA (XLOC_002919), lincRNA [TCONS_00005657]"	chr3:170130946-170131005	hs|3q26.2	Agilent_HUMAN_G3V2	ENST00000468232	ENST00000468232	chr3	170130946	170131005	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6435_PI429285431	1.7335842	A	2.4515097	A	0.607971036079954	0	lncRNA	6375-1_{1..443}	"transcript_id ""ENST00000590607.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000590607.1"" | genecode_v17"	chr19	 29704190	 29704632	+	ENSG00000267498.1	ENST00000590607.1	CTB-32O4.2	CTB-32O4.2-002	UQCRFS1	NA	chr19:29698167-29704136	inter
CUST_49525_PI429285431	8.534646	P	7.9408417	P	1.50922123042998	0	lncRNA	53317-1_{1..1579}	hg19_lincRNAsTranscripts_TCONS_l2_00024198 range=chr6:36641552-36643217 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024198 range=chr6:36641552-36643217 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	 36641552	 36643130	+	NA	NA	NA	NA	CDKN1A	NA	chr6:36644237-36653217	inter
CUST_12957_PI429285431	0.90567946	A	0.90380836	A	1.00129778908991	0	lncRNA	14584-2_{3001..6000}	lnc-SLC35A5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC35A5-1:1	chr3	112318667	112321666	+	lnc-SLC35A5-1	lnc-SLC35A5-1:1	XLOC_002759	linc-GTPBP8	CCDC80	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00chr3:112323407-112332287"	NA	inter
LNCA_21_P0013073	0.8975822	A	0.884214	A	1.00930919363091	0	lncRNA	TCONS_l2_00024680	NA	NA	NA	NA	XLOC_l2_012929	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012929), lincRNA [TCONS_l2_00024680]"	chr6:28028187-28007194	hs|6p22.1	Agilent_HUMAN_G3V2	TCONS_l2_00024680	TCONS_l2_00024680	chr6	 28007194	 28028187	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27738_PI429285431	1.035985	A	0.9055865	A	1.09459600788786	0	lncRNA	29320-1_{1..638}	n324954|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079692|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079692|-0.2738460|-0.3267705	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324954|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000079692|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000079692|-0.2738460|-0.3267705	chr20	 48695414	 48696051	+	NA	NA	NA	NA	TMEM189-UBE2V1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00chr20:48697661-48720235"	NA	inner
LNCA_21_P0004282	0.8864953	A	0.8832381	A	1.00226026956318	0	lncRNA	TCONS_00010055	NA	NA	NA	NA	XLOC_004502	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004502), lincRNA [TCONS_00010055]"	chr5:108812261-108812320	hs|5q21.3	Agilent_HUMAN_G3V2	TCONS_00010055	TCONS_00010055	chr5	108812261	108812320	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012125	0.88548356	A	0.88283116	A	1.00184019466562	0	lncRNA	TCONS_l2_00016265	NA	NA	NA	NA	XLOC_l2_008632	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008632), lincRNA [TCONS_l2_00016265]"	chr20:42855094-42855153	hs|20q13.12	Agilent_HUMAN_G3V2	TCONS_l2_00016265	TCONS_l2_00016265	chr20	 42855094	 42855153	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011154	1.6412388	A	2.1864202	A	0.68530522891832	0	lncRNA	TCONS_l2_00006958	NA	NA	NA	NA	XLOC_l2_003810	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003810), lincRNA [TCONS_l2_00006958]"	chr13:84694612-84694671	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_l2_00006958	TCONS_l2_00006958	chr13	 84694612	 84694671	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42178_PI429285431	8.727521	P	8.904375	P	0.884629954900622	0	lncRNA	44233-1_{1..83}	ENST00000579029 ncrna:miRNA chromosome:GRCh37:1:170339354:170339436:-1 gene:ENSG00000263384 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579029 ncrna:miRNA chromosome:GRCh37:1:170339354:170339436:-1 gene:ENSG00000263384 gene_biotype:miRNA transcript_biotype:miRNA	chr1	170339354	170339436	-	ENSG00000263384	ENST00000579029	NA	NA	NA	NA	NA	inter
LNCA_21_P0002394	2.3824508	A	1.6123323	A	1.70540985663719	0	lncRNA	ENST00000450467	XR_108384	XR_108384	NA	Hs.258100	XLOC_001964	NA	ENST00000450467	THC2651514	NA	"PREDICTED: Homo sapiens hypothetical LOC100506216 (LOC100506216), miscRNA [XR_108384]"	chr2:6789318-6789259	hs|2p25.2	Agilent_HUMAN_G3V2	ENST00000450467	ENST00000450467	chr2	  6789259	  6789318	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17125_PI429285431	1.5049961	A	1.7492409	A	0.844257619584839	0	lncRNA	18835-1_{1..239}	lnc-ZNF621-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF621-3:1	chr3	 40915984	 40916222	+	lnc-ZNF621-3	lnc-ZNF621-3:1	XLOC_002623	linc-CTNNB1-1	NA	NA	NA	inter
CUST_32944_PI429285431	4.8054843	P	3.1019263	A	3.25703223900813	0	lncRNA	34565-1_{1..649}	n339619|AX721161|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2063|NULL|0.0613389|-0.2911995	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339619|AX721161|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2063|NULL|0.0613389|-0.2911995	chr3	141121659	141122307	+	NA	NA	NA	NA	ZBTB38	NA	chr3:141111659-141168634	inner
LNCA_21_P0006531	0.9160652	A	0.9286325	A	0.991326842171225	0	lncRNA	TCONS_00017307	NA	NA	NA	NA	XLOC_008141	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008141), lincRNA [TCONS_00017307]"	chrX:38639342-38639283	hs|Xp11.4	Agilent_HUMAN_G3V2	TCONS_00017307	TCONS_00017307	chrX	 38639283	 38639342	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21263_PI429285431	7.161906	P	7.5068765	P	0.787324075482771	0	lncRNA	22888-1_{1..599}	lnc-PABPC4-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PABPC4-2:4	chr1	 40007392	 40007990	-	lnc-PABPC4-2	lnc-PABPC4-2:4	ENSG00000182109.3	RP11-69E11.4	NA	"hg19_refFlat_BMP8A:range=chr1:39957664-399914705'pad=0,hg19_refFlat_BMP8A:range=chr1:39957664-399914705'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70;hg19_refFlat_BMP8B:range=chr1:40226091-402541575'pad=0,hg19_refFlat_BMP8B:range=chr1:40226091-402541575'pad=0 3'pad=0 strand=- repeatMasking=none,-100.30"	NA	inter
CUST_19847_PI429285431	1.2504158	A	0.904159	A	1.27125795333237	0	lncRNA	21504-1_{1..274}	lnc-SLC5A1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SLC5A1-1:2	chr22	 32539059	 32539332	+	lnc-SLC5A1-1	lnc-SLC5A1-1:2	ENSG00000239674.1	RP1-127L4.7	C22orf42	NA	chr22:32545519-32549259	inter
LNCA_21_P0014487	4.661885	P	4.5692015	P	1.0663518177529	0	lncRNA	XR_110049	XR_110049	XR_110049	NA	Hs.517918	KRBOX1-AS1	KRBOX1 antisense RNA 1 (non-protein coding)	NA	THC2622713	NA	"PREDICTED: Homo sapiens hypothetical LOC100506275 (LOC100506275), miscRNA [XR_110049]"	chr3:42976218-42976159	hs|3p22.1	Agilent_HUMAN_G3V2	XR_110049	XR_110049	chr3	 42976159	 42976218	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15299_PI429285431	0.89722514	A	0.8926059	A	1.00320694446116	0	lncRNA	16977-1_{1..282}	lnc-SLC38A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC38A2-1:1	chr12	 46888055	 46888336	-	lnc-SLC38A2-1	lnc-SLC38A2-1:1	XLOC_010061	linc-SLC38A2	NA	NA	NA	inter
LNCA_21_P0003430	0.89340055	A	0.89259326	A	1.00055972737633	0	lncRNA	ENST00000509956	NA	NA	NA	NA	XLOC_003773	NA	ENST00000509956	THC2653415	NA	"BROAD Institute lincRNA (XLOC_003773), lincRNA [TCONS_00007678]"	chr4:170884398-170884457	hs|4q33	Agilent_HUMAN_G3V2	ENST00000509956	ENST00000509956	chr4	170884398	170884457	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009478	0.89129066	A	0.8857527	A	1.0038459983031	0	lncRNA	TCONS_00026330	NA	NA	NA	NA	XLOC_012677	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012677), lincRNA [TCONS_00026330]"	chr18:49691618-49691677	hs|18q21.2	Agilent_HUMAN_G3V2	TCONS_00026330	TCONS_00026330	chr18	 49691618	 49691677	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1088_PI429285431	0.91494495	A	0.9190126	A	0.997184490872165	0	lncRNA	1077-1_{1..661}	"transcript_id ""ENST00000432608.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432608.1"" | genecode_v17"	chr2	145425534	145426194	+	ENSG00000226674.3	ENST00000432608.1	AC074093.1	AC074093.1-003	NA	NA	NA	inter
CUST_11446_PI429285431	7.413667	P	7.180464	P	1.17544171186806	0	lncRNA	13014-1_{1..3000}	lnc-TCF12-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TCF12-1:2	chr15	 57595100	 57598099	+	lnc-TCF12-1	lnc-TCF12-1:2	XLOC_011264	linc-CGNL1-2	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30"	NA	inter
CUST_12088_PI429285431	2.2172713	A	3.115516	A	0.536539131405107	0	lncRNA	13682-1_{1..467}	lnc-FGF8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGF8-1:1	chr10	103526752	103527218	-	lnc-FGF8-1	lnc-FGF8-1:1	XLOC_008927	linc-FBXW4-1	FGF8	NA	chr10:103529887-103536776	inter
LNCA_21_P0003904	4.9201713	P	4.799372	P	1.08733711582235	0	lncRNA	TCONS_00009150	NA	NA	NA	NA	XLOC_004134	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004134), lincRNA [TCONS_00009150]"	chr4:157049959-157041440	hs|4q32.1	Agilent_HUMAN_G3V2	TCONS_00009150	TCONS_00009150	chr4	157041440	157049959	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010527	0.89782584	A	1.8235884	A	0.52640220595703	0	lncRNA	TCONS_l2_00000263	NA	NA	NA	NA	XLOC_l2_000186	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000186), lincRNA [TCONS_l2_00000263]"	chr1:46906305-46906364	hs|1p33	Agilent_HUMAN_G3V2	TCONS_l2_00000263	TCONS_l2_00000263	chr1	 46906305	 46906364	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005834	0.89726794	A	0.94007283	A	0.970765747199988	0	lncRNA	TCONS_00015013	NA	NA	NA	NA	XLOC_007087	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007087), lincRNA [TCONS_00015013]"	chr8:57430779-57430720	hs|8q12.1	Agilent_HUMAN_G3V2	TCONS_00015013	TCONS_00015013	chr8	 57430720	 57430779	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002845	0.89571923	A	0.88530177	A	1.0072469661054	0	lncRNA	TCONS_00005763	NA	NA	NA	NA	XLOC_003092	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003092), lincRNA [TCONS_00005763]"	chr3:40508086-40508027	hs|3p22.1	Agilent_HUMAN_G3V2	TCONS_00005763	TCONS_00005763	chr3	 40508027	 40508086	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014480	4.9211245	P	4.9344034	P	0.99083799718628	0	lncRNA	XR_110024	XR_110024	XR_110024	NA	Hs.730041	LOC401068	uncharacterized LOC401068	NA	THC2610631	NA	"PREDICTED: Homo sapiens hypothetical LOC401068 (LOC401068), miscRNA [XR_110024]"	chr3:53082000-53082059	hs|3p21.1	Agilent_HUMAN_G3V2	XR_110024	XR_110024	chr3	 53082000	 53082059	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47321_PI429285431	2.4506404	A	1.7903466	A	1.58040443501339	0	lncRNA	51379-1_{1..2099}	"gi|300797741|ref|NR_034147.1| Homo sapiens APCDD1L antisense RNA 1 (head to head) (APCDD1L-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300797741|ref|NR_034147.1| Homo sapiens APCDD1L antisense RNA 1 (head to head) (APCDD1L-AS1), non-coding RNA"	Chr20	 57090435	 57092533	+	149773	NR_034147.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001032	0.9542906	A	0.99451685	A	0.972502423198323	0	lncRNA	ENST00000427173	NA	BC031234	NA	Hs.573792	XLOC_000473	NA	ENST00000427173	NA	NA	"BROAD Institute lincRNA (XLOC_000473), lincRNA [TCONS_00000341]"	chr1:177679406-177679465	hs|1q25.2	Agilent_HUMAN_G3V2	ENST00000427173	ENST00000427173	chr1	177679406	177679465	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005863	3.4335217	P	3.570688	P	0.909303430011034	0	lncRNA	ENST00000520988	NA	NA	NA	NA	XLOC_007136	NA	ENST00000520988	THC2724107	NA	"BROAD Institute lincRNA (XLOC_007136), lincRNA [TCONS_00015056]"	chr8:83064116-83064057	hs|8q21.13	Agilent_HUMAN_G3V2	ENST00000520988	ENST00000520988	chr8	 83064057	 83064116	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11588_PI429285431	1.9570723	A	1.6627489	A	1.22630972349017	0	lncRNA	13167-1_{1..1104}	lnc-DMRTA1-7:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRTA1-7:1	chr9	 24591877	 24592980	+	lnc-DMRTA1-7	lnc-DMRTA1-7:1	XLOC_007304	linc-IFT74-3	NA	"hg19_refFlat_IZUMO3:range=chr9:24543227-245456475'pad=0,hg19_refFlat_IZUMO3:range=chr9:24543227-245456475'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40"	NA	inter
LNCA_21_P0014573	3.386431	P	3.513998	P	0.915373860558764	0	lncRNA	XR_110349	XR_110349	XR_110349	NA	NA	LOC100293962	uncharacterized LOC100293962	NA	THC2614414	NA	"PREDICTED: Homo sapiens hypothetical LOC100293962 (LOC100293962), miscRNA [XR_110349]"	chr12:49626670-49626611	hs|12q13.12	Agilent_HUMAN_G3V2	XR_110349	XR_110349	chr12	 49626611	 49626670	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009418	1.9060125	A	2.2100885	A	0.809960804432522	0	lncRNA	TCONS_00026166	NA	NA	NA	NA	XLOC_012579	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012579), lincRNA [TCONS_00026166]"	chr17:74776026-74775865	hs|17q25.1	Agilent_HUMAN_G3V2	TCONS_00026166	TCONS_00026166	chr17	 74775865	 74776026	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23109_PI429285431	11.208681	P	11.6806755	P	0.720967184274914	0	lncRNA	24680-1_{1..1815}	lnc-SLC9A11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC9A11-1:1	chr1	173429517	173431331	-	lnc-SLC9A11-1	lnc-SLC9A11-1:1	ENSG00000203739.3	RP11-296O14.3	NA	NA	NA	inter
CUST_43037_PI429285431	0.92799145	A	0.98760194	A	0.959523143859612	0	lncRNA	46603-1_{1..103}	ENST00000517122 ncrna:snRNA chromosome:GRCh37:15:86365086:86365188:1 gene:ENSG00000252931 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517122 ncrna:snRNA chromosome:GRCh37:15:86365086:86365188:1 gene:ENSG00000252931 gene_biotype:snRNA transcript_biotype:snRNA	chr15	 86365086	 86365188	+	ENSG00000252931	ENST00000517122	NA	NA	NA	NA	NA	inter
CUST_51884_PI429285431	4.2673974	P	4.3894186	P	0.918899380410526	0	lncRNA	55433-1_{1..706}	hg19_lincRNAsTranscripts_TCONS_l2_00012691 range=chr19:53708283-53723113 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012691 range=chr19:53708283-53723113 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 53708283	 53708988	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_35303_PI429285431	0.9250727	A	1.5389487	A	0.653438787760456	0	lncRNA	36706-1_{1..2131}	n342325|BC036607|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4817|NULL|0.5516630|-0.4174073	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342325|BC036607|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4817|NULL|0.5516630|-0.4174073	chr1	163390859	163392989	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19647_PI429285431	0.9028977	A	0.89905167	A	1.0026694214283	0	lncRNA	21303-1_{1..368}	lnc-NBPF11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-NBPF11-1:1	chr1	146158981	146159348	-	lnc-NBPF11-1	lnc-NBPF11-1:1	ENSG00000227733.2	RP4-565E6.1	NA	NA	NA	inter
CUST_22582_PI429285431	9.6967535	P	8.044752	P	3.14269333419216	0	lncRNA	24167-3_{6001..8636}	lnc-IL17B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-IL17B-2:1	chr5	148886578	148889213	-	lnc-IL17B-2	lnc-IL17B-2:1	ENSG00000230551.3	CTB-89H12.4	CSNK1A1	"hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-54.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70chr5:148874845-148894233"	NA	inner
LNCA_21_P0002372	2.4658062	A	2.4243164	A	1.02917605744986	0	lncRNA	TCONS_00004058	NA	NA	NA	NA	XLOC_001905	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001905), lincRNA [TCONS_00004058]"	chr2:236174524-236174583	hs|2q37.2	Agilent_HUMAN_G3V2	TCONS_00004058	TCONS_00004058	chr2	236174524	236174583	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44217_PI429285431	0.89805984	A	0.9147603	A	0.988490865915116	0	lncRNA	48868-2_{3001..4728}	"gi|373432660|ref|NR_046079.1| Homo sapiens sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B (SEMA5B), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373432660|ref|NR_046079.1| Homo sapiens sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B (SEMA5B), transcript variant 5, non-coding RNA"	Chr3	122631040	122632767	-	54437	NR_046079.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0012516	6.0611615	P	6.407113	P	0.786788894893431	0	lncRNA	ENST00000490001	NA	BC036236	NA	Hs.606987	XLOC_l2_010014	NA	ENST00000490001	THC2606871	NA	"BROAD Institute lincRNA (XLOC_l2_010014), lincRNA [TCONS_l2_00019995]"	chr3:181717981-181718040	hs|3q26.33	Agilent_HUMAN_G3V2	ENST00000490001	ENST00000490001	chr3	181717981	181718040	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006207	4.7968364	P	5.1656237	P	0.774433195985805	0	lncRNA	TCONS_00016125	NA	NA	NA	NA	XLOC_007510	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007510), lincRNA [TCONS_00016125]"	chr9:110382582-110382641	hs|9q31.2	Agilent_HUMAN_G3V2	TCONS_00016125	TCONS_00016125	chr9	110382582	110382641	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004297	4.493682	P	4.942419	P	0.732683991744705	0	lncRNA	ENST00000417667	NA	NA	NA	NA	XLOC_004549	NA	ENST00000417667	NA	NA	"BROAD Institute lincRNA (XLOC_004549), lincRNA [TCONS_00010092]"	chr5:131520772-131523038	hs|5q31.1	Agilent_HUMAN_G3V2	ENST00000417667	ENST00000417667	chr5	131520772	131523038	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49240_PI429285431	1.8074608	A	1.534711	A	1.20810830852479	0	lncRNA	53062-1_{1..962}	hg19_lincRNAsTranscripts_TCONS_l2_00022231 range=chr5:23980843-24178799 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022231 range=chr5:23980843-24178799 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 23980843	 23981804	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20422_PI429285431	6.860262	P	7.1229515	P	0.83353258257157	0	lncRNA	22065-1_{1..583}	lnc-SRGAP3-1:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRGAP3-1:15	chr3	  9438244	  9438826	-	lnc-SRGAP3-1	lnc-SRGAP3-1:15	ENSG00000206573.4	RP11-58B17.1	LOC100652926	NA	chr3:9435634-9438752	inter
CUST_37472_PI429285431	3.346951	P	3.9128916	P	0.675514854629541	0	lncRNA	38572-1_{1..278}	n345929|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1478|NULL|-1.5713200|-0.1790401	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345929|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1478|NULL|-1.5713200|-0.1790401	chr16	 18482166	 18482443	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_46902_PI429285431	6.413754	P	6.9712286	P	0.679490553770242	0	lncRNA	51023-1_{1..2348}	"gi|374671781|ref|NR_046273.1| Homo sapiens uncharacterized LOC729683 (LOC729683), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|374671781|ref|NR_046273.1| Homo sapiens uncharacterized LOC729683 (LOC729683), non-coding RNA"	Chr17	 61777698	 61780045	+	729683	NR_046273.1	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-59.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30"	NA	inter
CUST_5687_PI429285431	3.2888975	P	3.684738	P	0.760046451992784	0	lncRNA	5611-1_{1..444}	"transcript_id ""ENST00000568587.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000568587.1"" | genecode_v17"	chr16	 88225092	 88225535	-	ENSG00000261816.1	ENST00000568587.1	RP11-863P13.2	RP11-863P13.2-001	NA	NA	NA	inter
LNCA_21_P0002398	12.345086	P	12.025582	P	1.24790144537596	0	lncRNA	TCONS_00004131	NA	NA	NA	NA	XLOC_001974	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001974), lincRNA [TCONS_00004131]"	chr2:8441881-8439875	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_00004131	TCONS_00004131	chr2	  8439875	  8441881	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22428_PI429285431	0.90772116	A	1.0242202	A	0.922423363685559	0	lncRNA	24016-1_{1..311}	lnc-HSD3B2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-HSD3B2-2:1	chr1	119912707	119913017	+	lnc-HSD3B2-2	lnc-HSD3B2-2:1	ENSG00000230921.1	HAO2-IT1	HAO2	NA	chr1:119911402-119922954	inner
CUST_7091_PI429285431	4.0550213	P	4.423791	P	0.774442643656312	0	lncRNA	7026-1_{1..483}	"transcript_id ""ENST00000453317.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000453317.1"" | genecode_v17"	chrX	 73164181	 73164663	+	ENSG00000225470.2	ENST00000453317.1	JPX	JPX-002	NA	NA	NA	inter
CUST_38742_PI429285431	8.485034	P	8.717276	P	0.851310895504728	0	lncRNA	39734-1_{1..1450}	n384275|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003dpu.2||-1.0269000|-0.2249665	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n384275|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003dpu.2||-1.0269000|-0.2249665	chr3	 75721423	 75722872	+	NA	NA	NA	NA	FRG2C	NA	chr3:75711423-75716368	inter
CUST_33716_PI429285431	1.8168949	A	0.9250193	A	1.8555869434037	0	lncRNA	35275-2_{3001..3838}	n340494|AK098506|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2955|NULL|-0.1604780|-0.1467499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n340494|AK098506|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2955|NULL|-0.1604780|-0.1467499	chr17	  6922140	  6922977	-	NA	NA	NA	NA	BCL6B	"hg19_refFlat_C17orf49:range=chr17:6918177-69205845'pad=0,hg19_refFlat_C17orf49:range=chr17:6918177-69205845'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.80;hg19_refFlat_C17orf49:range=chr17:6918177-69206405'pad=0,hg19_refFlat_C17orf49:range=chr17:6918177-69206405'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.80chr17:6926369-6932961"	NA	inter
LNCA_21_P0006993	0.9397057	A	0.997713	A	0.960590003380336	0	lncRNA	TCONS_00018504	NA	NA	NA	NA	XLOC_008812	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008812), lincRNA [TCONS_00018504]"	chr10:48577580-48577521	hs|10q11.22	Agilent_HUMAN_G3V2	TCONS_00018504	TCONS_00018504	chr10	 48577521	 48577580	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31461_PI429285431	0.92222506	A	1.0748527	A	0.899610471904639	0	lncRNA	33228-1_{1..803}	n337936|L77562|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|321|NULL|-1.3275100|-0.2820428	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337936|L77562|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|321|NULL|-1.3275100|-0.2820428	chr22	 19048553	 19049355	-	NA	NA	NA	NA	DGCR2	NA	chr22:19038553-19059356	inter
CUST_23901_PI429285431	3.3943636	P	3.6736977	P	0.823971247205759	0	lncRNA	25458-1_{1..514}	lnc-RP11-419C23.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-419C23.1.1-3:1	chr8	 36636556	 36637069	-	lnc-RP11-419C23.1.1-3	lnc-RP11-419C23.1.1-3:1	ENSG00000253363.1	RP11-962G15.1	KCNU1	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50chr8:36641842-36646682"	NA	inter
CUST_26977_PI429285431	0.9553911	A	1.0104505	A	0.96255481107196	0	lncRNA	28503-1_{1..648}	n324064|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052690|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052690|-0.1906060|-0.2717049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324064|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052690|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052690|-0.1906060|-0.2717049	chr9	 76176266	 76176913	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15483_PI429285431	5.0907536	P	5.4522395	P	0.778362494254731	0	lncRNA	17172-1_{1..252}	lnc-BCL11A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BCL11A-1:1	chr2	 60666699	 60666950	-	lnc-BCL11A-1	lnc-BCL11A-1:1	XLOC_002109	linc-FANCL-5	NA	NA	NA	inter
LNCA_21_P0001454	1.1832625	A	1.5611466	A	0.769565431219596	0	lncRNA	TCONS_00001367	NA	NA	NA	NA	XLOC_000667	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000667), lincRNA [TCONS_00001367]"	chr1:758398-758339	hs|1p36.33	Agilent_HUMAN_G3V2	TCONS_00001367	TCONS_00001367	chr1	   758339	   758398	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8001_PI429285431	4.283431	P	3.6398084	P	1.56224703283328	0	lncRNA	9612-1_{1..663}	lnc-SPAM1-4:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SPAM1-4:5	chr7	124742014	124742676	+	lnc-SPAM1-4	lnc-SPAM1-4:5	ENSG00000224897	RP11-3B12.1	NA	NA	NA	inter
LNCA_21_P0004391	0.9171076	A	0.92987263	A	0.991190984197751	0	lncRNA	TCONS_00010340	NA	NA	NA	NA	XLOC_004829	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004829), lincRNA [TCONS_00010340]"	chr5:55745831-55745772	hs|5q11.2	Agilent_HUMAN_G3V2	TCONS_00010340	TCONS_00010340	chr5	 55745772	 55745831	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009241	5.470697	P	5.826723	P	0.781313799343551	0	lncRNA	TCONS_00025369	NA	NA	NA	NA	XLOC_012183	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012183), lincRNA [TCONS_00025369]"	chr17:35040000-35040059	hs|17q12	Agilent_HUMAN_G3V2	TCONS_00025369	TCONS_00025369	chr17	 35040000	 35040059	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008686	0.906404	A	0.91491663	A	0.994116868310646	0	lncRNA	TCONS_00023538	NA	NA	NA	NA	XLOC_011369	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011369), lincRNA [TCONS_00023538]"	chr15:96770533-96795374	hs|15q26.2	Agilent_HUMAN_G3V2	TCONS_00023538	TCONS_00023538	chr15	 96770533	 96795374	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9301_PI429285431	0.91153395	A	0.92110914	A	0.993384960392552	0	lncRNA	10807-1_{1..272}	lnc-PAX9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAX9-1:1	chr14	 37125942	 37126213	+	lnc-PAX9-1	lnc-PAX9-1:1	XLOC_010803	linc-PAX9-1	PAX9	NA	chr14:37126773-37136057	inter
LNCA_21_P0014316	1.8178278	A	2.5302114	A	0.610310958409938	0	lncRNA	XR_109252	XR_109252	XR_109252	NA	NA	LOC100287598	uncharacterized LOC100287598	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100287598 (LOC100287598), miscRNA [XR_109252]"	chr16:9061154-9061213	hs|16p13.2	Agilent_HUMAN_G3V2	XR_109252	XR_109252	chr16	  9061154	  9061213	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33712_PI429285431	0.89996946	A	0.90052134	A	0.99961753909082	0	lncRNA	35272-1_{1..1738}	n340490|L26969|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2951|NULL|-1.2128400|-0.2894780	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340490|L26969|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2951|NULL|-1.2128400|-0.2894780	chr5	 67595895	 67597632	-	NA	NA	NA	NA	PIK3R1	NA	chr5:67585895-67597649	inner
LNCA_21_P0014655	3.7663174	P	3.4304903	P	1.26210076639553	0	lncRNA	XR_110918	XR_110918	XR_110918	NA	NA	LOC100507675	uncharacterized LOC100507675	ENST00000532454	THC2664364	NA	"PREDICTED: Homo sapiens hypothetical LOC100507675, transcript variant 1 (LOC100507675), miscRNA [XR_110918]"	chr11:65556581-65556522	hs|11q13.1	Agilent_HUMAN_G3V2	XR_110918	XR_110918	chr11	 65556522	 65556581	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4301_PI429285431	4.016383	P	4.395391	P	0.768966151569553	0	lncRNA	4256-1_{1..192}	"transcript_id ""ENST00000535721.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535721.1"" | genecode_v17"	chr12	 67285656	 67285847	-	ENSG00000256248.1	ENST00000535721.1	RP11-123O10.4	RP11-123O10.4-001	NA	NA	NA	inter
LNCA_33_P3330179	3.1194522	P	2.419822	A	1.62408844354021	0	lncRNA	XR_110620	XR_110620	XR_110620	100131372	Hs.704272	LOC100131372	uncharacterized LOC100131372	NA	THC2728758	NA	"PREDICTED: Homo sapiens hypothetical LOC100131372 (LOC100131372), miscRNA [XR_110620]"	chr7:467202-467143	hs|7p22.3	Agilent_HUMAN_G3V2	XR_110620	XR_110620	chr7	   467143	   467202	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001337	6.7745433	P	7.0846963	P	0.806556218174533	0	lncRNA	TCONS_00001024	NA	NA	NA	NA	XLOC_000291	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000291), lincRNA [TCONS_00001024]"	chr1:90251992-90252051	hs|1p22.2	Agilent_HUMAN_G3V2	TCONS_00001024	TCONS_00001024	chr1	 90251992	 90252051	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41731_PI429285431	11.967476	P	11.906141	P	1.04343085453865	0	lncRNA	43259-1_{1..84}	ENST00000578566 ncrna:miRNA chromosome:GRCh37:17:925716:925799:-1 gene:ENSG00000264429 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578566 ncrna:miRNA chromosome:GRCh37:17:925716:925799:-1 gene:ENSG00000264429 gene_biotype:miRNA transcript_biotype:miRNA	chr17	   925716	   925799	-	ENSG00000264429	ENST00000578566	NA	NA	ABR	NA	chr17:915716-935799	inner
CUST_22016_PI429285431	5.552889	P	5.832894	P	0.823588162923562	0	lncRNA	23625-1_{1..519}	lnc-NCOA6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NCOA6-1:1	chr20	 33302394	 33302912	-	lnc-NCOA6-1	lnc-NCOA6-1:1	ENSG00000225065.1	RP11-346K17.4	TP53INP2	NA	chr20:33292394-33301237	inter
CUST_6974_PI429285431	1.8753016	A	2.3363535	A	0.726456390527384	0	lncRNA	6922-1_{1..178}	"transcript_id ""ENST00000416995.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000416995.1"" | genecode_v17"	chr22	 32366810	 32366987	+	ENSG00000230866.1	ENST00000416995.1	CTA-342B11.2	CTA-342B11.2-001	NA	NA	NA	inter
LNCA_21_P0014312	10.290426	P	9.477835	P	1.75636294191934	0	lncRNA	XR_109242	XR_109242	XR_109242	NA	Hs.369728	LOC100507303	uncharacterized LOC100507303	NA	THC2698032	NA	"PREDICTED: Homo sapiens hypothetical LOC100507303 (LOC100507303), miscRNA [XR_109242]"	chr16:2204862-2204803	hs|16p13.3	Agilent_HUMAN_G3V2	XR_109242	XR_109242	chr16	  2204803	  2204862	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17572_PI429285431	2.4440613	A	2.9582	A	0.700210839277796	0	lncRNA	19301-1_{1..407}	lnc-EXOC6B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EXOC6B-1:1	chr2	 73112696	 73113102	-	lnc-EXOC6B-1	lnc-EXOC6B-1:1	XLOC_002158	linc-EXOC6B-1	SPR	NA	chr2:73114512-73119289	inter
LNCA_21_P0011631	0.9310291	A	0.9951073	A	0.956556307403779	0	lncRNA	ENST00000440522	NA	NA	NA	NA	XLOC_l2_005988	NA	ENST00000440522	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005988), lincRNA [TCONS_l2_00011616]"	chr17:13203175-13202532	hs|17p12	Agilent_HUMAN_G3V2	ENST00000440522	ENST00000440522	chr17	 13202532	 13203175	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32388_PI429285431	0.9199918	A	0.9160516	A	1.00273487147729	0	lncRNA	34065-1_{1..2560}	n338979|BC014936|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1407|NULL|-0.9544280|-0.2885889	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338979|BC014936|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1407|NULL|-0.9544280|-0.2885889	chr2	151409045	151411604	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009247	0.9218395	A	0.95703477	A	0.975899662987803	0	lncRNA	TCONS_00025387	NA	NA	NA	NA	XLOC_012200	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012200), lincRNA [TCONS_00025387]"	chr17:38965668-38965727	hs|17q21.2	Agilent_HUMAN_G3V2	TCONS_00025387	TCONS_00025387	chr17	 38965668	 38965727	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012479	0.9084244	A	0.9175565	A	0.993690102178446	0	lncRNA	TCONS_l2_00019673	NA	NA	NA	NA	XLOC_l2_010494	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010494), lincRNA [TCONS_l2_00019673]"	chr3:193723216-193723157	hs|3q29	Agilent_HUMAN_G3V2	TCONS_l2_00019673	TCONS_l2_00019673	chr3	193723157	193723216	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24140_PI429285431	0.9250531	A	0.96134573	A	0.975157644722237	0	lncRNA	25692-1_{1..808}	lnc-TMEM194B-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM194B-1:3	chr2	191555076	191555883	-	lnc-TMEM194B-1	lnc-TMEM194B-1:3	ENSG00000228509.1	AC006460.2	NAB1	"hg19_refFlat_NAB1:range=chr2:191523903-1915550595'pad=0,hg19_refFlat_NAB1:range=chr2:191523903-1915550595'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00chr2:191545076-191557492"	NA	inner
LNCA_21_P0003218	0.8949648	A	0.89533293	A	0.999744864281075	0	lncRNA	TCONS_00006792	NA	NA	NA	NA	XLOC_002585	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002585), lincRNA [TCONS_00006792]"	chr3:16282918-16282977	hs|3p25.1	Agilent_HUMAN_G3V2	TCONS_00006792	TCONS_00006792	chr3	 16282918	 16282977	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32631_PI429285431	1.470369	A	1.435481	A	1.02447728722872	0	lncRNA	34290-1_{1..1998}	n339255|AK092130|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1687|NULL|-0.2500840|-0.2997453	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339255|AK092130|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1687|NULL|-0.2500840|-0.2997453	chr3	 14240059	 14242056	+	NA	NA	NA	NA	LSM3	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60chr3:14230059-14239869"	NA	inter
CUST_43635_PI429285431	0.9104552	A	0.915289	A	0.996655071936821	0	lncRNA	48394-1_{1..1955}	"gi|373938454|ref|NR_046115.1| Homo sapiens Rh family, B glycoprotein (gene/pseudogene) (RHBG), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|373938454|ref|NR_046115.1| Homo sapiens Rh family, B glycoprotein (gene/pseudogene) (RHBG), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_046115.1	NA	NA	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40"	NA	Unknown
LNCA_21_P0003520	0.892305	A	0.88855255	A	1.00260438567317	0	lncRNA	ENST00000508072	NA	NA	NA	NA	XLOC_004115	NA	ENST00000508072	NA	NA	"BROAD Institute lincRNA (XLOC_004115), lincRNA [TCONS_00007869]"	chr4:148530773-148530714	hs|4q31.23	Agilent_HUMAN_G3V2	ENST00000508072	ENST00000508072	chr4	148530714	148530773	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8147_PI429285431	0.9072681	A	0.9087892	A	0.998946209451288	0	lncRNA	9750-1_{1..637}	lnc-LARP1B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LARP1B-1:1	chr4	129387763	129388399	+	lnc-LARP1B-1	lnc-LARP1B-1:1	ENSG00000251432	RP11-420A23.1	NA	NA	NA	inter
CUST_48368_PI429285431	0.90759426	A	0.90883714	A	0.999138872215747	0	lncRNA	52221-2_{3001..4259}	hg19_lincRNAsTranscripts_TCONS_l2_00000386 range=chr1:89885750-89893743 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000386 range=chr1:89885750-89893743 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 89888750	 89890008	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006966	3.4536128	P	2.7210412	A	1.6615982478745	0	lncRNA	TCONS_00018881	NA	NA	NA	NA	XLOC_008729	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008729), lincRNA [TCONS_00018881]"	chr10:10504155-10464682	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018881	TCONS_00018881	chr10	 10464682	 10504155	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002467	1.8507358	A	2.8908854	A	0.486277046681721	0	lncRNA	TCONS_00004320	NA	NA	NA	NA	XLOC_002185	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002185), lincRNA [TCONS_00004320]"	chr2:83094075-83094016	hs|2p12	Agilent_HUMAN_G3V2	TCONS_00004320	TCONS_00004320	chr2	 83094016	 83094075	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005240	0.8922903	A	0.88088894	A	1.00793413024878	0	lncRNA	TCONS_00013023	NA	NA	NA	NA	XLOC_006153	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006153), lincRNA [TCONS_00013023]"	chr7:77299317-77299376	hs|7q11.23	Agilent_HUMAN_G3V2	TCONS_00013023	TCONS_00013023	chr7	 77299317	 77299376	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43157_PI429285431	3.3072944	P	3.6303928	P	0.799351308191547	0	lncRNA	47972-1_{1..411}	ENST00000589221 havana:sense_intronic chromosome:GRCh37:17:35391965:35400550:1 gene:ENSG00000267479 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000589221 havana:sense_intronic chromosome:GRCh37:17:35391965:35400550:1 gene:ENSG00000267479 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr17	 35391965	 35392375	+	ENSG00000267479	ENST00000589221	NA	NA	AATF	NA	chr17:35381965-35410550	inner
CUST_17167_PI429285431	0.91902155	A	0.8998392	A	1.01338497925264	0	lncRNA	18877-1_{1..216}	lnc-CTD-2523D13.1.1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTD-2523D13.1.1-3:1	chr11	119737729	119737944	+	lnc-CTD-2523D13.1.1-3	lnc-CTD-2523D13.1.1-3:1	XLOC_009300	linc-OAF-5	NA	NA	NA	inter
CUST_34429_PI429285431	0.9212028	A	1.0645956	A	0.905387441236334	0	lncRNA	35909-1_{1..1908}	n341305|AF400039|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3774|NULL|-1.0558100|-0.1639840	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341305|AF400039|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3774|NULL|-1.0558100|-0.1639840	chr7	116592499	116594406	-	NA	NA	NA	NA	ST7	"hg19_refFlat_ST7:range=chr7:116593595-1168699115'pad=0,hg19_refFlat_ST7:range=chr7:116593595-1168699115'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_ST7:range=chr7:116593595-1168630345'pad=0,hg19_refFlat_ST7:range=chr7:116593595-1168630345'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70chr7:116593381-116604388"	NA	inner
CUST_22262_PI429285431	2.890668	A	1.5555341	A	2.52298897147662	0	lncRNA	23863-1_{1..734}	lnc-LONP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LONP2-1:2	chr16	 48395765	 48396498	+	lnc-LONP2-1	lnc-LONP2-1:2	ENSG00000259778.1	AC141846.4-001	LONP2	"hg19_refFlat_SIAH1:range=chr16:48395491-483993885'pad=0,hg19_refFlat_SIAH1:range=chr16:48395491-483993885'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_SIAH1:range=chr16:48395491-483963395'pad=0,hg19_refFlat_SIAH1:range=chr16:48395491-483963395'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70chr16:48385765-48387407"	NA	inter
LNCA_21_P0008162	0.8985363	A	0.88433874	A	1.00988958054629	0	lncRNA	XR_110123	XR_110123	XR_110123	NA	NA	LOC100129597	uncharacterized LOC100129597	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100129597 (LOC100129597), miscRNA [XR_110123]"	chr13:49142357-49142298	hs|13q14.2	Agilent_HUMAN_G3V2	XR_110123	XR_110123	chr13	 49142298	 49142357	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13112_PI429285431	0.91533166	A	0.8969127	A	1.01284889692103	0	lncRNA	14736-1_{1..700}	lnc-STOML3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STOML3-2:2	chr13	 39141669	 39142368	-	lnc-STOML3-2	lnc-STOML3-2:2	XLOC_010573	linc-TRPC4-1	NA	NA	NA	inter
CUST_15742_PI429285431	0.92797387	A	1.982998	A	0.481289171613429	0	lncRNA	17429-1_{1..643}	lnc-UTP23-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UTP23-1:2	chr8	117627255	117627897	+	lnc-UTP23-1	lnc-UTP23-1:2	XLOC_006905	linc-UTP23-1	NA	NA	NA	inter
CUST_37216_PI429285431	1.8864266	A	2.0104227	A	0.917642362946757	0	lncRNA	38328-1_{1..610}	n345651|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1200|NULL|-1.3210000|-0.1963491	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345651|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1200|NULL|-1.3210000|-0.1963491	chr4	123073487	123074096	+	NA	NA	NA	NA	NA	"hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-25.10;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60"	NA	inter
CUST_24970_PI429285431	3.8905315	P	3.8523362	P	1.02682853977977	0	lncRNA	26509-1_{1..1260}	lnc-MTAP-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-MTAP-1:7	chr9	 22077678	 22078937	+	lnc-MTAP-1	lnc-MTAP-1:7	ENSG00000240498.2	CDKN2B-AS1	NA	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10"	NA	inter
CUST_26498_PI429285431	2.6894488	A	1.5945668	A	2.13595610618049	0	lncRNA	28007-1_{1..1789}	lnc-COG7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-COG7-2:1	chr16	 23073706	 23075494	-	lnc-COG7-2	lnc-COG7-2:1	ENSG00000260566.1	RP11-20G6.3	USP31	NA	chr16:23072728-23085494	inner
CUST_30630_PI429285431	0.9551422	A	1.0162734	A	0.958512266551437	0	lncRNA	32412-1_{1..358}	n335975|X72484|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323326|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323326|2.0783200|-0.1885595	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335975|X72484|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323326|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323326|2.0783200|-0.1885595	chr2	 89161035	 89161392	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_41987_PI429285431	0.9189073	A	0.9257602	A	0.995261195419275	0	lncRNA	43816-1_{1..83}	ENST00000579234 ncrna:miRNA chromosome:GRCh37:2:86420149:86420231:-1 gene:ENSG00000265420 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579234 ncrna:miRNA chromosome:GRCh37:2:86420149:86420231:-1 gene:ENSG00000265420 gene_biotype:miRNA transcript_biotype:miRNA	chr2	 86420149	 86420231	-	ENSG00000265420	ENST00000579234	NA	NA	IMMT	NA	chr2:86410149-86422893	inner
CUST_43854_PI429285431	2.0045464	A	2.7999227	A	0.576192864672925	0	lncRNA	48576-1_{1..3000}	"gi|380254481|ref|NR_046438.1| Homo sapiens MEIS1 antisense RNA 3 (MEIS1-AS3), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|380254481|ref|NR_046438.1| Homo sapiens MEIS1 antisense RNA 3 (MEIS1-AS3), non-coding RNA"	Chr2	 66650474	 66653473	-	730198	NR_046438.1	NA	NA	NA	NA	NA	inter
CUST_16638_PI429285431	3.214533	A	2.2354758	A	1.97117682558515	0	lncRNA	18340-1_{1..362}	lnc-RAP1GDS1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAP1GDS1-2:1	chr4	 99090441	 99090802	+	lnc-RAP1GDS1-2	lnc-RAP1GDS1-2:1	XLOC_003613	linc-RAP1GDS1-1	NA	NA	NA	inter
CUST_13875_PI429285431	0.9153572	A	0.9073147	A	1.00559020339774	0	lncRNA	15520-1_{1..1460}	lnc-RGS18-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RGS18-5:1	chr1	190449475	190450934	+	lnc-RGS18-5	lnc-RGS18-5:1	XLOC_000505	linc-RGS18-3	FAM5C	NA	chr1:190439475-190446759	inter
CUST_4136_PI429285431	5.10329	P	5.075711	P	1.01930019254623	0	lncRNA	4095-1_{1..641}	"transcript_id ""ENST00000543036.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000543036.1"" | genecode_v17"	chr12	  3428607	  3429247	+	ENSG00000236908.2	ENST00000543036.1	RP5-1063M23.2	RP5-1063M23.2-002	NA	NA	NA	inter
LNCA_21_P0014537	0.91117626	A	0.9214486	A	0.992905045368474	0	lncRNA	XR_110234	XR_110234	XR_110234	NA	NA	LOC100506792	uncharacterized LOC100506792	ENST00000555560	THC2782702	NA	"PREDICTED: Homo sapiens hypothetical LOC100506792, transcript variant 2 (LOC100506792), miscRNA [XR_110234]"	chr14:90095379-90095320	hs|14q32.11	Agilent_HUMAN_G3V2	XR_110234	XR_110234	chr14	 90095320	 90095379	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45384_PI429285431	5.2977195	P	5.598872	P	0.811603785909297	0	lncRNA	49816-1_{1..2497}	"gi|302393543|ref|NR_036505.1| Homo sapiens uncharacterized LOC100128361 (LOC100128361), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|302393543|ref|NR_036505.1| Homo sapiens uncharacterized LOC100128361 (LOC100128361), non-coding RNA"	Chr9	 95380332	 95382828	+	100128361	NR_036505.1	NA	NA	NA	"hg19_refFlat_IPPK:range=chr9:95378114-954322705'pad=0,hg19_refFlat_IPPK:range=chr9:95378114-954322705'pad=0 3'pad=0 strand=- repeatMasking=none,-91.20"	NA	inter
LNCA_21_P0003611	0.89603066	A	2.099565	A	0.43421024162218	0	lncRNA	TCONS_00008081	NA	NA	NA	NA	XLOC_003547	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003547), lincRNA [TCONS_00008081]"	chr4:58024985-58025044	hs|4q12	Agilent_HUMAN_G3V2	TCONS_00008081	TCONS_00008081	chr4	 58024985	 58025044	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012801	1.7148002	A	0.88517064	A	1.77722896565224	0	lncRNA	ENST00000504369	NA	NA	NA	NA	XLOC_l2_011283	NA	ENST00000504369	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011283), lincRNA [TCONS_l2_00022002]"	chr4:139220069-139220010	hs|4q28.3	Agilent_HUMAN_G3V2	ENST00000504369	ENST00000504369	chr4	139220010	139220069	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38219_PI429285431	0.89438975	A	1.052997	A	0.895889528087445	0	lncRNA	39283-2_{3001..4686}	n381591|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001luy.1||2.2159000|-0.1104514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381591|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001luy.1||2.2159000|-0.1104514	chr11	  1997988	  1999673	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010891	7.3538947	P	7.318185	P	1.02506095372765	0	lncRNA	ENST00000413722	NA	BC036645	NA	NA	XLOC_l2_002033	NA	ENST00000413722	THC2534780	NA	"BROAD Institute lincRNA (XLOC_l2_002033), lincRNA [TCONS_l2_00003644]"	chr10:89047814-89047755	hs|10q23.2	Agilent_HUMAN_G3V2	ENST00000413722	ENST00000413722	chr10	 89047755	 89047814	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29885_PI429285431	5.6774154	P	6.175191	P	0.708197865214202	0	lncRNA	31648-1_{1..492}	n333925|L46721|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193899|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193899|-0.6307690|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333925|L46721|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000193899|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000193899|-0.6307690|-1.0000000	NA	NA	      491	NA	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012231	0.8930392	A	0.8804531	A	1.00876218489318	0	lncRNA	ENST00000421051	NA	BC021745	NA	Hs.382669	XLOC_l2_009198	NA	ENST00000421051	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009198), lincRNA [TCONS_l2_00017489]"	chr21:34484064-34484005	hs|21q22.11	Agilent_HUMAN_G3V2	ENST00000421051	ENST00000421051	chr21	 34484005	 34484064	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38199_PI429285431	1.2148751	A	1.2411166	A	0.981975203722073	0	lncRNA	39267-1_{1..205}	n381529|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kgu.2||-1.2921200|-0.3583689	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381529|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001kgu.2||-1.2921200|-0.3583689	chr10	 91492812	 91493016	+	NA	NA	NA	NA	KIF20B	NA	chr10:91482812-91503017	inner
LNCA_21_P0001688	4.1036773	P	4.36995	P	0.83146491899346	0	lncRNA	TCONS_00002073	NA	NA	NA	NA	XLOC_000264	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000264), lincRNA [TCONS_00002073]"	chr1:78689353-78691008	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_00002073	TCONS_00002073	chr1	 78689353	 78691008	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43940_PI429285431	6.801469	P	7.5521936	P	0.594304990205036	0	lncRNA	48650-1_{1..1668}	"gi|389886558|ref|NR_024005.2| Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2 (DDX11L2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|389886558|ref|NR_024005.2| Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2 (DDX11L2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_024005.2	NA	NA	NA	NA	NA	Unknown
CUST_15792_PI429285431	0.9102889	A	0.8994539	A	1.00753852236058	0	lncRNA	17482-1_{1..557}	lnc-WARS2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WARS2-1:1	chr1	119860894	119861450	-	lnc-WARS2-1	lnc-WARS2-1:1	XLOC_000984	linc-WARS2-3	NA	NA	NA	inter
CUST_13714_PI429285431	4.267288	P	4.4131365	P	0.903847636432969	0	lncRNA	15353-1_{1..708}	lnc-KCNS3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KCNS3-4:1	chr2	 19299476	 19300183	+	lnc-KCNS3-4	lnc-KCNS3-4:1	XLOC_001376	linc-RHOB-6	NA	NA	NA	inter
LNCA_21_P0004454	0.9576814	A	0.99434304	A	0.974908252510986	0	lncRNA	TCONS_00010521	NA	NA	NA	NA	XLOC_005041	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005041), lincRNA [TCONS_00010521]"	chr5:144819429-144819370	hs|5q32	Agilent_HUMAN_G3V2	TCONS_00010521	TCONS_00010521	chr5	144819370	144819429	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31923_PI429285431	0.9754185	A	1.0102551	A	0.976142312637226	0	lncRNA	33651-1_{1..672}	n338477|AF086224|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|874|NULL|-0.9012570|-0.3103565	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338477|AF086224|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|874|NULL|-0.9012570|-0.3103565	chr1	203769300	203769971	-	NA	NA	NA	NA	ZC3H11A	"hg19_refFlat_ZBED6:range=chr1:203766651-2037695905'pad=0,hg19_refFlat_ZBED6:range=chr1:203766651-2037695905'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90chr1:203764751-203779971"	NA	inner
CUST_47443_PI429285431	5.0526814	P	4.403194	P	1.568610758002	0	lncRNA	51476-1_{1..3000}	"gi|374671825|ref|NR_046282.1| Homo sapiens zinc finger protein 74 (ZNF74), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374671825|ref|NR_046282.1| Homo sapiens zinc finger protein 74 (ZNF74), transcript variant 5, non-coding RNA"	Chr22	 20748405	 20751404	+	7625	NR_046282.1	NA	NA	NA	"hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0,hg19_refFlat_IFT81:range=chr12:110565186-1106057835'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30"	NA	inter
CUST_46704_PI429285431	8.928118	P	9.385275	P	0.728420282948556	0	lncRNA	50863-1_{1..1608}	"gi|237858584|ref|NR_027703.1| Homo sapiens cyclin-dependent kinase 10 (CDK10), transcript variant f, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|237858584|ref|NR_027703.1| Homo sapiens cyclin-dependent kinase 10 (CDK10), transcript variant f, non-coding RNA"	Chr16	 89753076	 89754683	+	8558	NR_027703.1	NA	NA	NA	NA	NA	inter
CUST_5337_PI429285431	3.5246072	P	4.2984347	P	0.584863758770176	0	lncRNA	5275-1_{1..573}	"transcript_id ""ENST00000554787.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000554787.1"" | genecode_v17"	chr15	 95623324	 95623896	-	ENSG00000258773.1	ENST00000554787.1	RP11-255M2.2	RP11-255M2.2-001	NA	NA	NA	inter
LNCA_21_P0007071	7.0549436	P	6.884453	P	1.12544113489257	0	lncRNA	TCONS_00018786	NA	NA	NA	NA	XLOC_008573	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008573), lincRNA [TCONS_00018786]"	chr10:99098184-99098243	hs|10q24.1	Agilent_HUMAN_G3V2	TCONS_00018786	TCONS_00018786	chr10	 99098184	 99098243	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51841_PI429285431	2.5776227	A	2.645286	A	0.95418221414279	0	lncRNA	55396-1_{1..1093}	hg19_lincRNAsTranscripts_TCONS_l2_00013326 range=chr19:42108584-42111870 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013326 range=chr19:42108584-42111870 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 42108584	 42109676	+	NA	NA	NA	NA	CEACAM4	"hg19_refFlat_DNAJC19:range=chr3:180702428-1807073905'pad=0,hg19_refFlat_DNAJC19:range=chr3:180702428-1807073905'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00;hg19_refFlat_DNAJC19:range=chr3:180702428-1807058645'pad=0,hg19_refFlat_DNAJC19:range=chr3:180702428-1807058645'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00chr19:42107611-42121870"	NA	inter
LNCA_21_P0012853	1.7956171	A	2.383399	A	0.665365099772756	0	lncRNA	TCONS_l2_00022559	NA	NA	NA	NA	XLOC_l2_011798	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011798), lincRNA [TCONS_l2_00022559]"	chr5:142125134-142125193	hs|5q31.3	Agilent_HUMAN_G3V2	TCONS_l2_00022559	TCONS_l2_00022559	chr5	142125134	142125193	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50996_PI429285431	8.675489	P	8.4338875	P	1.18230438002423	0	lncRNA	54641-1_{1..258}	hg19_lincRNAsTranscripts_TCONS_l2_00006558 range=chr12:133181183-133182755 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00006558 range=chr12:133181183-133182755 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr12	133181183	133181440	-	NA	NA	NA	NA	LOC100507055	NA	chr12:133179736-133187037	inner
CUST_46646_PI429285431	7.540229	P	6.9006877	P	1.55783377260228	0	lncRNA	50819-1_{1..935}	"gi|300795812|ref|NR_034106.1| Homo sapiens colorectal neoplasia differentially expressed (non-protein coding) (CRNDE), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300795812|ref|NR_034106.1| Homo sapiens colorectal neoplasia differentially expressed (non-protein coding) (CRNDE), transcript variant 2, non-coding RNA"	Chr16	 54952775	 54953709	-	643911	NR_034106.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0011724	6.5927157	P	6.6748796	P	0.944639717383903	0	lncRNA	TCONS_l2_00012889	NA	NA	NA	NA	XLOC_l2_006939	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006939), lincRNA [TCONS_l2_00012889]"	chr19:15962936-15962877	hs|19p13.12	Agilent_HUMAN_G3V2	TCONS_l2_00012889	TCONS_l2_00012889	chr19	 15962877	 15962936	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30996_PI429285431	9.129618	P	9.186255	P	0.961502824014192	0	lncRNA	32784-1_{1..640}	n337159|AF399581|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383994|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383994|5.2773300|-0.1999710	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337159|AF399581|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383994|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383994|5.2773300|-0.1999710	chr14	 22133498	 22134137	+	NA	NA	NA	NA	OR4E2	NA	chr14:22133297-22134238	inner
LNCA_21_P0002495	1.9986631	A	1.0025724	A	1.99458789541041	0	lncRNA	TCONS_00004415	NA	NA	NA	NA	XLOC_002287	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002287), lincRNA [TCONS_00004415]"	chr2:114800884-114800825	hs|2q14.1	Agilent_HUMAN_G3V2	TCONS_00004415	TCONS_00004415	chr2	114800825	114800884	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40394_PI429285431	1.2745743	A	0.9812826	A	1.22543307843724	0	lncRNA	41185-1_{1..1413}	n409252|NR_033419|lncRNA|Homosapiens||RefGeneNoncode|NR_033419||3.3430400|-0.1761880	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n409252|NR_033419|lncRNA|Homosapiens||RefGeneNoncode|NR_033419||3.3430400|-0.1761880	chr14	 21467413	 21468825	+	NA	NA	NA	NA	METTL17	NA	chr14:21457413-21465194	inner
LNCA_21_P0008041	2.8777626	A	2.5548654	A	1.2508399476741	0	lncRNA	TCONS_00021740	NA	NA	NA	NA	XLOC_010330	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010330), lincRNA [TCONS_00021740]"	chr13:30170860-30170919	hs|13q12.3	Agilent_HUMAN_G3V2	TCONS_00021740	TCONS_00021740	chr13	 30170860	 30170919	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7902_PI429285431	1.0308981	A	1.1208117	A	0.939579016958735	0	lncRNA	9517-1_{1..2884}	lnc-TIPIN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIPIN-1:1	chr15	 66617976	 66620859	-	lnc-TIPIN-1	lnc-TIPIN-1:1	ENSG00000247991	ENST00000499718	DIS3L	"hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_DIS3L:range=chr15:66587436-666256505'pad=0,hg19_refFlat_DIS3L:range=chr15:66587436-666256505'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70;hg19_refFlat_DIS3L:range=chr15:66585935-666256505'pad=0,hg19_refFlat_DIS3L:range=chr15:66585935-666256505'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.70chr15:66607976-66626236"	NA	inner
CUST_4164_PI429285431	0.8943005	A	1.0425862	A	0.902322020998855	0	lncRNA	4121-1_{1..649}	"transcript_id ""ENST00000539009.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000539009.1"" | genecode_v17"	chr12	 10485460	 10486108	-	ENSG00000256288.1	ENST00000539009.1	RP11-277P12.10	RP11-277P12.10-001	NA	NA	NA	inter
LNCA_21_P0013508	0.894878	A	0.88025755	A	1.01018564783113	0	lncRNA	TCONS_l2_00028090	NA	NA	NA	NA	XLOC_l2_014424	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014424), lincRNA [TCONS_l2_00028090]"	chr8:8271782-8271723	hs|8p23.1	Agilent_HUMAN_G3V2	TCONS_l2_00028090	TCONS_l2_00028090	chr8	  8271723	  8271782	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45931_PI429285431	6.396353	P	6.2183676	P	1.13130301405935	0	lncRNA	50237-1_{1..1319}	"gi|336594460|ref|NR_038908.1| Homo sapiens FLI1 antisense RNA 1 (FLI1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336594460|ref|NR_038908.1| Homo sapiens FLI1 antisense RNA 1 (FLI1-AS1), non-coding RNA"	Chr11	128561567	128562885	-	100507392	NR_038908.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0011952	0.89902735	A	0.8841779	A	1.01034600803724	0	lncRNA	THC2677895	NA	NA	NA	NA	XLOC_l2_008203	NA	NA	THC2677895	NA	"BROAD Institute lincRNA (XLOC_l2_008203), lincRNA [TCONS_l2_00014799]"	chr2:112004696-112004637	hs|2q13	Agilent_HUMAN_G3V2	THC2677895	THC2677895	chr2	112004637	112004696	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32424_PI429285431	1.240696	A	0.9257221	A	1.2439891479113	0	lncRNA	34100-1_{1..3000}	n339019|AL833646|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1448|NULL|-1.0397000|-0.2240129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n339019|AL833646|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1448|NULL|-1.0397000|-0.2240129	chr2	175190754	175193753	+	NA	NA	NA	NA	SP9	NA	chr2:175199821-175202268	inter
LNCA_21_P0013168	1.1290305	A	0.89606667	A	1.17524686327938	0	lncRNA	TCONS_l2_00025618	NA	NA	NA	NA	XLOC_l2_013267	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013267), lincRNA [TCONS_l2_00025618]"	chr7:5889573-5889632	hs|7p22.1	Agilent_HUMAN_G3V2	TCONS_l2_00025618	TCONS_l2_00025618	chr7	  5889573	  5889632	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001815	0.89225686	A	0.88552976	A	1.0046737584952	0	lncRNA	AK123041	NA	AK123041	NA	NA	LOC400940	uncharacterized LOC400940	NA	THC2480109	NA	"BROAD Institute lincRNA (XLOC_001327), lincRNA [TCONS_00002804]"	chr2:6124828-6124887	hs|2p25.2	Agilent_HUMAN_G3V2	AK123041	AK123041	chr2	  6124828	  6124887	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41794_PI429285431	5.133383	P	5.169203	P	0.975477160799356	0	lncRNA	43375-1_{1..71}	ENST00000385019 ncrna:miRNA chromosome:GRCh37:19:10928102:10928172:-1 gene:ENSG00000207752 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385019 ncrna:miRNA chromosome:GRCh37:19:10928102:10928172:-1 gene:ENSG00000207752 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 10928102	 10928172	-	ENSG00000207752	ENST00000385019	NA	NA	DNM2	NA	chr19:10918102-10938172	inner
LNCA_21_P0014857	3.0868268	P	3.1887631	P	0.93178156979114	0	lncRNA	XR_132744	XR_132744	XR_132744	NA	NA	LOC100506276	uncharacterized LOC100506276	ENST00000414610	THC2730257	NA	"PREDICTED: Homo sapiens hypothetical LOC100506276 (LOC100506276), miscRNA [XR_132744]"	chr6:109201397-109201456	hs|6q21	Agilent_HUMAN_G3V2	XR_132744	XR_132744	chr6	109201397	109201456	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002121	0.95847464	A	1.7047304	A	0.596148741951572	0	lncRNA	ENST00000440016	NA	NA	NA	NA	XLOC_002403	NA	ENST00000440016	NA	NA	"BROAD Institute lincRNA (XLOC_002403), lincRNA [TCONS_00003443]"	chr2:176986867-176986808	hs|2q31.1	Agilent_HUMAN_G3V2	ENST00000440016	ENST00000440016	chr2	176986808	176986867	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26919_PI429285431	0.9202082	A	0.92302454	A	0.998049766051865	0	lncRNA	28437-1_{1..397}	n323995|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053568|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053568|-0.8502010|-0.1203044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323995|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053568|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053568|-0.8502010|-0.1203044	chr9	110503470	110503866	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008445	3.4785264	P	4.033154	P	0.680832777579768	0	lncRNA	TCONS_00022761	NA	NA	NA	NA	XLOC_011044	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011044), lincRNA [TCONS_00022761]"	chr14:61108426-61108367	hs|14q23.1	Agilent_HUMAN_G3V2	TCONS_00022761	TCONS_00022761	chr14	 61108367	 61108426	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7834_PI429285431	6.4932513	P	6.614186	P	0.919591668237589	0	lncRNA	9458-1_{1..1163}	lnc-EEFSEC-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EEFSEC-3:1	chr3	128215542	128216704	+	lnc-EEFSEC-3	lnc-EEFSEC-3:1	ENSG00000244300	RP11-475N22.4	GATA2	NA	chr3:128205542-128212030	inter
CUST_43851_PI429285431	1.8918991	A	1.0018756	A	1.85320631033602	0	lncRNA	48573-2_{3001..3647}	"gi|320089541|ref|NR_037710.1| Homo sapiens family with sequence similarity 161, member A (FAM161A), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|320089541|ref|NR_037710.1| Homo sapiens family with sequence similarity 161, member A (FAM161A), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_037710.1	NA	NA	NA	"hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-40.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40"	NA	Unknown
LNCA_21_P0008717	0.9256963	A	0.97723794	A	0.96490469667025	0	lncRNA	TCONS_00023604	NA	NA	NA	NA	XLOC_011414	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011414), lincRNA [TCONS_00023604]"	chr15:32500209-32499497	hs|15q13.3	Agilent_HUMAN_G3V2	TCONS_00023604	TCONS_00023604	chr15	 32499497	 32500209	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004787	5.4753833	P	5.436989	P	1.0269701864668	0	lncRNA	ENST00000422023	NA	NA	NA	NA	XLOC_005869	NA	ENST00000422023	THC2681419	NA	"BROAD Institute lincRNA (XLOC_005869), lincRNA [TCONS_00011590]"	chr6:148339934-148338648	hs|6q24.3	Agilent_HUMAN_G3V2	ENST00000422023	ENST00000422023	chr6	148338648	148339934	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004889	6.9793167	P	7.264251	P	0.820778986045467	0	lncRNA	TCONS_00011825	NA	NA	NA	NA	XLOC_005311	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005311), lincRNA [TCONS_00011825]"	chr6:47824991-47838089	hs|6p12.3	Agilent_HUMAN_G3V2	TCONS_00011825	TCONS_00011825	chr6	 47824991	 47838089	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20385_PI429285431	1.3117161	A	1.74525	A	0.740445830564791	0	lncRNA	22027-1_{1..871}	lnc-ANKRD11-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD11-1:1	chr16	 89570615	 89571485	-	lnc-ANKRD11-1	lnc-ANKRD11-1:1	ENSG00000261118.1	RP11-104N10.1	SPG7	NA	chr16:89574805-89580868	inter
LNCA_21_P0002392	1.8102784	A	0.8843845	A	1.89986103929134	0	lncRNA	TCONS_00004115	NA	NA	NA	NA	XLOC_001964	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001964), lincRNA [TCONS_00004115]"	chr2:6778888-6778474	hs|2p25.2	Agilent_HUMAN_G3V2	TCONS_00004115	TCONS_00004115	chr2	  6778474	  6778888	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005007	5.77938	P	5.713407	P	1.04679069113082	0	lncRNA	TCONS_00012100	NA	NA	NA	NA	XLOC_005629	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005629), lincRNA [TCONS_00012100]"	chr6:18744728-18744669	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00012100	TCONS_00012100	chr6	 18744669	 18744728	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12437_PI429285431	0.92147106	A	1.100796	A	0.883116123736037	0	lncRNA	14050-1_{1..955}	lnc-DNASE1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNASE1-2:1	chr16	  3692893	  3693847	+	lnc-DNASE1-2	lnc-DNASE1-2:1	XLOC_011630	linc-DNASE1	DNASE1	NA	chr16:3702940-3703096	inter
CUST_34489_PI429285431	0.9162341	A	0.91521704	A	1.00070522082282	0	lncRNA	35957-1_{1..3000}	n341366|BC046498|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3835|NULL|0.0390809|-0.2754359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341366|BC046498|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3835|NULL|0.0390809|-0.2754359	chr7	151837803	151840802	+	NA	NA	NA	NA	MLL3	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0,hg19_refFlat_ST20-MTHFS:range=chr15:80137552-802000155'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_MLL3:range=chr7:151833917-1521328715'pad=0,hg19_refFlat_MLL3:range=chr7:151833917-1521328715'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-31.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.00;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_CEP63:range=chr3:134214163-1342937335'pad=0,hg19_refFlat_CEP63:range=chr3:134214163-1342937335'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0,hg19_refFlat_HIF3A:range=chr19:46807190-468415635'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.10chr7:151827803-151852813"	NA	inner
LNCA_21_P0009061	0.8954128	A	0.8804273	A	1.01044129086002	0	lncRNA	TCONS_00024730	NA	NA	NA	NA	XLOC_012011	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012011), lincRNA [TCONS_00024730]"	chr16:75616504-75614470	hs|16q23.1	Agilent_HUMAN_G3V2	TCONS_00024730	TCONS_00024730	chr16	 75614470	 75616504	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003324	3.9211159	P	4.6150136	P	0.618181463508929	0	lncRNA	AK057455	NA	AK057455	NA	Hs.518966	XLOC_004064	NA	NA	THC2625916	NA	"BROAD Institute lincRNA (XLOC_004064), lincRNA [TCONS_00007433]"	chr4:125421192-125421133	hs|4q28.1	Agilent_HUMAN_G3V2	AK057455	AK057455	chr4	125421133	125421192	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32749_PI429285431	0.925494	A	0.923728	A	1.00122484743452	0	lncRNA	34386-1_{1..1325}	n339377|BC029462|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1809|NULL|-0.1625150|-0.2625507	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339377|BC029462|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1809|NULL|-0.1625150|-0.2625507	chr3	 57886575	 57887899	+	NA	NA	NA	NA	SLMAP	"hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-27.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-24.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20chr3:57876575-57897872"	NA	inner
CUST_38236_PI429285431	5.270834	P	5.6102786	P	0.790345515734719	0	lncRNA	39297-1_{1..3000}	n381724|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ody.2||0.7245230|-0.3263076	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381724|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001ody.2||0.7245230|-0.3263076	chr11	 65266958	 65269957	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44079_PI429285431	0.90829444	A	0.93620044	A	0.980842909545367	0	lncRNA	48747-1_{1..2931}	"gi|375331921|ref|NR_046334.1| Homo sapiens cholinergic receptor, nicotinic, delta (muscle) (CHRND), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|375331921|ref|NR_046334.1| Homo sapiens cholinergic receptor, nicotinic, delta (muscle) (CHRND), transcript variant 4, non-coding RNA"	Chr2	233390870	233393800	+	1144	NR_046334.1	NA	NA	NA	NA	NA	inter
CUST_48282_PI429285431	3.4431143	P	3.565498	P	0.918668521378639	0	lncRNA	52142-1_{1..1509}	hg19_lincRNAsTranscripts_TCONS_l2_00001051 range=chr1:16946320-16971153 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001051 range=chr1:16946320-16971153 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 16946320	 16947828	-	NA	NA	NA	NA	NBPF1	NA	chr1:16936320-16939982	inter
CUST_16342_PI429285431	6.042444	P	5.9010305	P	1.10298525138567	0	lncRNA	18043-1_{1..575}	lnc-RBM12B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RBM12B-2:1	chr8	 94910510	 94911084	-	lnc-RBM12B-2	lnc-RBM12B-2:1	XLOC_007161	linc-RBM12B-2	NA	NA	NA	inter
CUST_12025_PI429285431	1.9797212	A	1.117052	A	1.81839950935885	0	lncRNA	13607-1_{1..2375}	lnc-MYEOV-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYEOV-6:1	chr11	 69306869	 69309243	+	lnc-MYEOV-6	lnc-MYEOV-6:1	XLOC_009194	linc-CCND1-1	NA	NA	NA	inter
LNCA_21_P0003181	0.9208769	A	0.9502893	A	0.979819290143637	0	lncRNA	TCONS_00006675	NA	NA	NA	NA	XLOC_003266	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003266), lincRNA [TCONS_00006675]"	chr3:136977217-136977158	hs|3q22.3	Agilent_HUMAN_G3V2	TCONS_00006675	TCONS_00006675	chr3	136977158	136977217	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008664	0.9180275	A	0.9307761	A	0.991202272349537	0	lncRNA	BX538250	NA	BX538250	NA	Hs.513091	SCARNA15	small Cajal body-specific RNA 15	NA	THC2491689	NA	"BROAD Institute lincRNA (XLOC_011333), lincRNA [TCONS_00023488]"	chr15:83424006-83424065	hs|15q25.2	Agilent_HUMAN_G3V2	BX538250	BX538250	chr15	 83424006	 83424065	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00806593	3.34638	P	3.5133834	P	0.890690801512827	0	lncRNA	TCONS_00011799	NA	NA	NA	NA	XLOC_005273	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005273), lincRNA [TCONS_00011799]"	chr6:36091062-36091121	hs|6p21.31	Agilent_HUMAN_G3V2	TCONS_00011799	TCONS_00011799	chr6	 36091062	 36091121	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12384_PI429285431	5.8237367	P	6.0104117	P	0.878628377050037	0	lncRNA	13997-1_{1..712}	lnc-DNAJB11-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DNAJB11-3:4	chr3	186162695	186163406	+	lnc-DNAJB11-3	lnc-DNAJB11-3:4	XLOC_002958	linc-DNAJB11-3	NA	NA	NA	inter
LNCA_21_P0006018	0.9097006	A	0.91898274	A	0.993586763977274	0	lncRNA	ENST00000422909	NA	NA	NA	NA	XLOC_007405	NA	ENST00000422909	NA	NA	"BROAD Institute lincRNA (XLOC_007405), lincRNA [TCONS_00015694]"	chr9:76194294-76194353	hs|9q21.13	Agilent_HUMAN_G3V2	ENST00000422909	ENST00000422909	chr9	 76194294	 76194353	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44043_PI429285431	0.92085445	A	1.57697	A	0.634584615089421	0	lncRNA	48722-1_{1..3000}	"gi|294345402|ref|NR_001557.4| Homo sapiens aldehyde oxidase 2 pseudogene (AOX2P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|294345402|ref|NR_001557.4| Homo sapiens aldehyde oxidase 2 pseudogene (AOX2P), non-coding RNA"	Chr2	201560446	201563445	+	344454	NR_001557.4	NA	NA	NA	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
LNCA_21_P0002427	2.9235122	A	1.9100292	A	2.01877902177194	0	lncRNA	TCONS_00004220	NA	NA	NA	NA	XLOC_002064	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002064), lincRNA [TCONS_00004220]"	chr2:42619611-42619552	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00004220	TCONS_00004220	chr2	 42619552	 42619611	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003522	0.9026924	A	0.88245124	A	1.01412898678894	0	lncRNA	ENST00000507849	NA	NA	NA	NA	XLOC_004119	NA	ENST00000507849	NA	NA	"BROAD Institute lincRNA (XLOC_004119), lincRNA [TCONS_00007871]"	chr4:149948671-149948612	hs|4q31.23	Agilent_HUMAN_G3V2	ENST00000507849	ENST00000507849	chr4	149948612	149948671	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_661_PI429285431	0.90583515	A	0.8894149	A	1.0114466674042	0	lncRNA	654-1_{1..2454}	"transcript_id ""ENST00000454455.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000454455.1"" | genecode_v17"	chr2	  4005245	  4007698	-	ENSG00000237401.2	ENST00000454455.1	AC107070.1	AC107070.1-002	NA	NA	NA	inter
LNCA_21_P0010937	0.8939328	A	0.88060665	A	1.00927977588712	0	lncRNA	ENST00000446557	NA	NA	NA	NA	XLOC_l2_001888	NA	ENST00000446557	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001888), lincRNA [TCONS_l2_00004124]"	chr10:26953235-26953176	hs|10p12.1	Agilent_HUMAN_G3V2	ENST00000446557	ENST00000446557	chr10	 26953176	 26953235	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26623_PI429285431	8.340277	P	8.635111	P	0.815166122003152	0	lncRNA	28126-1_{1..308}	lnc-CYP19A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-CYP19A1-1:1	chr15	 51361686	 51361993	-	lnc-CYP19A1-1	lnc-CYP19A1-1:1	ENSG00000259204.1	RP11-394B5.2	TNFAIP8L3	NA	chr15:51351686-51371783	inner
CUST_43582_PI429285431	0.9246949	A	0.9183488	A	1.00440847016227	0	lncRNA	48352-1_{1..3000}	"gi|387942412|ref|NR_049745.1| Homo sapiens HYDIN2, axonemal central pair apparatus protein (pseudogene) (HYDIN2), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|387942412|ref|NR_049745.1| Homo sapiens HYDIN2, axonemal central pair apparatus protein (pseudogene) (HYDIN2), non-coding RNA"	NA	NA	NA	NA	NA	NR_049745.1	NA	NA	NA	"hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-48.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.60;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-45.10;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-38.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-59.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20"	NA	Unknown
LNCA_21_P0009375	5.513809	P	5.85211	P	0.790972257651652	0	lncRNA	TCONS_00025806	NA	NA	NA	NA	XLOC_012083	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012083), lincRNA [TCONS_00025806]"	chr17:4063592-4063651	hs|17p13.2	Agilent_HUMAN_G3V2	TCONS_00025806	TCONS_00025806	chr17	  4063592	  4063651	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42534_PI429285431	1.6528429	A	1.1584042	A	1.40877254650976	0	lncRNA	45333-1_{1..128}	ENST00000384785 ncrna:snoRNA chromosome:GRCh37:15:45829448:45829575:1 gene:ENSG00000207516 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384785 ncrna:snoRNA chromosome:GRCh37:15:45829448:45829575:1 gene:ENSG00000207516 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 45829448	 45829575	+	ENSG00000207516	ENST00000384785	NA	NA	NA	NA	NA	inter
LNCA_21_P0005311	0.8936579	A	0.88597536	A	1.00533933465132	0	lncRNA	ENST00000441691	NA	NA	NA	NA	XLOC_006468	NA	ENST00000441691	NA	NA	"BROAD Institute lincRNA (XLOC_006468), lincRNA [TCONS_00013181]"	chr7:63488630-63488571	hs|7q11.21	Agilent_HUMAN_G3V2	ENST00000441691	ENST00000441691	chr7	 63488571	 63488630	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51549_PI429285431	0.91593206	A	0.9111272	A	1.00333602735649	0	lncRNA	55115-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00010574 range=chr17:14737965-14747525 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010574 range=chr17:14737965-14747525 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 14737965	 14740964	+	NA	NA	NA	NA	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.90;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-31.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.91;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50"	NA	inter
CUST_41296_PI429285431	3.3756468	P	3.286084	P	1.06404768038046	0	lncRNA	42292-1_{1..79}	ENST00000579337 ncrna:miRNA chromosome:GRCh37:18:14771248:14771326:1 gene:ENSG00000265481 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579337 ncrna:miRNA chromosome:GRCh37:18:14771248:14771326:1 gene:ENSG00000265481 gene_biotype:miRNA transcript_biotype:miRNA	chr18	 14771248	 14771326	+	ENSG00000265481	ENST00000579337	NA	NA	ANKRD30B	NA	chr18:14761248-14781326	inner
CUST_33552_PI429285431	3.6757631	P	4.142186	P	0.723756898826086	0	lncRNA	35120-1_{1..730}	n340301|AF251188|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2762|NULL|-0.9313390|-0.1846679	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340301|AF251188|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2762|NULL|-0.9313390|-0.1846679	chr5	   763494	   764223	-	NA	NA	NA	NA	ZDHHC11B	NA	chr5:753494-762215	inter
CUST_39581_PI429285431	2.9334579	A	2.747662	A	1.13744430072059	0	lncRNA	40524-1_{1..2516}	n387569|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011igp.1||-1.3603300|-0.3367943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387569|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011igp.1||-1.3603300|-0.3367943	chr6	  1188713	  1191228	+	NA	NA	NA	NA	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-24.10"	NA	inter
CUST_31109_PI429285431	9.846333	P	8.824613	P	2.03033811301867	0	lncRNA	32902-1_{1..259}	n337398|DQ656052|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393165|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393165|-0.0247507|-0.3159039	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337398|DQ656052|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393165|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393165|-0.0247507|-0.3159039	chr20	 34319913	 34320171	-	NA	NA	NA	NA	RBM39	NA	chr20:34309913-34330258	inner
LNCA_21_P0007162	0.9425366	A	0.99928623	A	0.961427763219708	0	lncRNA	ENST00000366405	NA	NA	NA	NA	XLOC_009566	NA	ENST00000366405	NA	NA	"BROAD Institute lincRNA (XLOC_009566), lincRNA [TCONS_00019175]"	chr11:116646542-116646483	hs|11q23.3	Agilent_HUMAN_G3V2	ENST00000366405	ENST00000366405	chr11	116646483	116646542	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32170_PI429285431	2.8990772	A	2.6600084	A	1.18023062545308	0	lncRNA	33870-1_{1..1320}	n338741|BC043434|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1162|NULL|-0.8096210|-0.2346164	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n338741|BC043434|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1162|NULL|-0.8096210|-0.2346164	chr19	 47164734	 47166053	+	NA	NA	NA	NA	PRKD2	NA	chr19:47177573-47184598	inter
CUST_37795_PI429285431	2.031248	A	2.3708491	A	0.790259785652334	0	lncRNA	38887-1_{1..276}	n346301|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1851|NULL|-1.3601100|-0.3166204	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346301|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1851|NULL|-1.3601100|-0.3166204	chr11	 62619908	 62620183	+	NA	NA	NA	NA	SLC3A2	NA	chr11:62623484-62630313	inter
LNCA_21_P0004485	0.9227303	A	0.96186316	A	0.97323974288989	0	lncRNA	TCONS_00010613	NA	NA	NA	NA	XLOC_004271	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004271), lincRNA [TCONS_00010613]"	chr5:6589235-6589294	hs|5p15.31	Agilent_HUMAN_G3V2	TCONS_00010613	TCONS_00010613	chr5	  6589235	  6589294	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4102_PI429285431	0.92231613	A	0.9580962	A	0.975504159812286	0	lncRNA	4063-1_{1..507}	"transcript_id ""ENST00000527100.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000527100.1"" | genecode_v17"	chr11	122165646	122166152	-	ENSG00000255015.1	ENST00000527100.1	RP11-716H6.1	RP11-716H6.1-001	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30"	NA	inter
CUST_43696_PI429285431	1.0200832	A	0.9216374	A	1.07061947410293	0	lncRNA	48446-1_{1..3000}	"gi|315221145|ref|NR_037664.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 7 (PTPN7), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|315221145|ref|NR_037664.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 7 (PTPN7), transcript variant 5, non-coding RNA"	Chr1	202116141	202119140	-	5778	NR_037664.1	NA	NA	NA	NA	NA	inter
LNCA_19_P00315452	7.747443	P	7.8903494	P	0.905692741167161	0	lncRNA	XR_110148	XR_110148	XR_110148	NA	NA	LOC100130938	uncharacterized LOC100130938	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100130938 (LOC100130938), miscRNA [XR_110148]"	chr18:59273360-59273301	hs|18q21.33	Agilent_HUMAN_G3V2	XR_110148	XR_110148	chr18	 59273301	 59273360	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007416	3.719831	P	3.6293283	P	1.06474112163711	0	lncRNA	TCONS_00019792	NA	NA	NA	NA	XLOC_009592	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009592), lincRNA [TCONS_00019792]"	chr11:125461105-125461046	hs|11q24.2	Agilent_HUMAN_G3V2	TCONS_00019792	TCONS_00019792	chr11	125461046	125461105	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010257	4.368844	P	4.870033	P	0.706524257797135	0	lncRNA	TCONS_00029038	NA	NA	NA	NA	XLOC_013957	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013957), lincRNA [TCONS_00029038]"	chr21:44299818-44303727	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029038	TCONS_00029038	chr21	 44299818	 44303727	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30814_PI429285431	0.90953076	A	0.9138322	A	0.99702290934112	0	lncRNA	32601-1_{1..269}	n336741|Z75936|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328103|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328103|-1.3267100|-0.2944397	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336741|Z75936|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000328103|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000328103|-1.3267100|-0.2944397	chr14	 22466224	 22466492	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7479_PI429285431	1.0285484	A	0.9258535	A	1.07377736602343	0	lncRNA	9120-2_{3001..5239}	lnc-MAPK15-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MAPK15-1:3	chr8	144826268	144828506	+	lnc-MAPK15-1	lnc-MAPK15-1:3	ENSG00000203499	RP11-429J17.6	FAM83H	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10chr8:144813268-144815914"	NA	inter
CUST_23128_PI429285431	1.2139683	A	1.6274283	A	0.750820527900023	0	lncRNA	24699-1_{1..388}	lnc-RGPD3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-RGPD3-2:1	chr2	107441322	107441709	-	lnc-RGPD3-2	lnc-RGPD3-2:1	ENSG00000238250.1	ST6GAL2-IT1	ST6GAL2	NA	chr2:107431322-107451487	inner
LNCA_21_P0003691	3.7089481	P	4.1729794	P	0.724957687944394	0	lncRNA	TCONS_00008360	NA	NA	NA	NA	XLOC_003810	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003810), lincRNA [TCONS_00008360]"	chr4:185818760-185818819	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00008360	TCONS_00008360	chr4	185818760	185818819	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26648_PI429285431	3.472551	A	4.0876727	A	0.652874817305645	0	lncRNA	28148-1_{1..942}	lnc-HS3ST3A1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HS3ST3A1-4:1	chr17	 13796042	 13796983	-	lnc-HS3ST3A1-4	lnc-HS3ST3A1-4:1	ENSG00000236088.2	AC015842.1	NA	NA	NA	inter
LNCA_21_P0008042	1.8179197	A	2.9197478	A	0.465925727327518	0	lncRNA	AK092065	NA	AK092065	NA	Hs.721012	XLOC_010335	NA	NA	THC2628148	NA	"BROAD Institute lincRNA (XLOC_010335), lincRNA [TCONS_00021744]"	chr13:30919402-30919461	hs|13q12.3	Agilent_HUMAN_G3V2	AK092065	AK092065	chr13	 30919402	 30919461	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31557_PI429285431	0.9050952	A	2.1362753	A	0.425968868050657	0	lncRNA	33315-1_{1..493}	n338049|AF085963|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|436|NULL|-0.8165460|-0.3373196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338049|AF085963|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|436|NULL|-0.8165460|-0.3373196	chr22	 36751405	 36751897	-	NA	NA	NA	NA	MYH9	NA	chr22:36741405-36761898	inner
LNCA_21_P0010049	1.4733933	A	2.361108	A	0.540469570953185	0	lncRNA	TCONS_00028423	NA	NA	NA	NA	XLOC_013774	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013774), lincRNA [TCONS_00028423]"	chr20:46845067-46845008	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028423	TCONS_00028423	chr20	 46845008	 46845067	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008856	6.333725	P	6.0914917	P	1.18282226043042	0	lncRNA	TCONS_00024174	NA	NA	NA	NA	XLOC_011535	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011535), lincRNA [TCONS_00024174]"	chr15:77657560-77638950	hs|15q24.3	Agilent_HUMAN_G3V2	TCONS_00024174	TCONS_00024174	chr15	 77638950	 77657560	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014582	0.89484555	A	0.88055617	A	1.00995385678593	0	lncRNA	ENST00000548687	XR_110379	XR_110379	NA	NA	LOC100507330	NA	ENST00000548687	THC2497563	NA	"PREDICTED: Homo sapiens hypothetical LOC100507330 (LOC100507330), miscRNA [XR_110379]"	chr12:70932779-70932838	hs|12q15	Agilent_HUMAN_G3V2	ENST00000548687	ENST00000548687	chr12	 70932779	 70932838	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008712	0.89530337	A	0.9882525	A	0.937604156169103	0	lncRNA	TCONS_00023593	NA	NA	NA	NA	XLOC_011406	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011406), lincRNA [TCONS_00023593]"	chr15:26379649-26379590	hs|15q12	Agilent_HUMAN_G3V2	TCONS_00023593	TCONS_00023593	chr15	 26379590	 26379649	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20265_PI429285431	1.4482164	A	0.9124322	A	1.44972996436751	0	lncRNA	21908-1_{1..1637}	lnc-HSFY2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-HSFY2-2:1	chrY	 20752266	 20753902	-	lnc-HSFY2-2	lnc-HSFY2-2:1	ENSG00000131007.5	TTTY9B	HSFY1	NA	chrY:20742266-20750849	inter
CUST_37001_PI429285431	13.195185	P	13.025187	P	1.12505692502766	0	lncRNA	38142-2_{3001..4965}	n345458|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1007|NULL|-1.6712700|-0.3891479	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345458|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1007|NULL|-1.6712700|-0.3891479	chr1	118382075	118384039	-	NA	NA	NA	NA	GDAP2	NA	chr1:118406107-118410566	inter
LNCA_21_P0010703	1.7067918	A	0.8864051	A	1.76587925545341	0	lncRNA	ENST00000443284	XR_132795	XR_132795	NA	NA	XLOC_l2_000217	NA	ENST00000443284	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652980 (LOC100652980), miscRNA [XR_132795]"	chr1:55354332-55354391	hs|1p32.3	Agilent_HUMAN_G3V2	ENST00000443284	ENST00000443284	chr1	 55354332	 55354391	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43382_PI429285431	1.0571736	A	0.91185755	A	1.10597291134744	0	lncRNA	48196-1_{1..801}	"gi|310118512|ref|XR_109872.1| PREDICTED: Homo sapiens uncharacterized LOC100506022 (LOC100506022), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118512|ref|XR_109872.1| PREDICTED: Homo sapiens uncharacterized LOC100506022 (LOC100506022), misc_RNA"	Chr1	  9486258	  9487058	-	100506022	XR_109872.2	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
LNCA_21_P0007506	0.95589894	A	1.8166252	A	0.550675275425131	0	lncRNA	ENST00000412812	NA	NA	NA	NA	XLOC_010053	NA	ENST00000412812	NA	NA	"BROAD Institute lincRNA (XLOC_010053), lincRNA [TCONS_00020243]"	chr12:40579933-40579874	hs|12q12	Agilent_HUMAN_G3V2	ENST00000412812	ENST00000412812	chr12	 40579874	 40579933	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004337	6.114177	P	5.6028595	P	1.42535126271591	0	lncRNA	TCONS_00010175	NA	NA	NA	NA	XLOC_004637	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004637), lincRNA [TCONS_00010175]"	chr5:172707876-172707935	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00010175	TCONS_00010175	chr5	172707876	172707935	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009207	0.9520113	A	1.9410121	A	0.503826600824384	0	lncRNA	TCONS_00025258	NA	NA	NA	NA	XLOC_012064	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012064), lincRNA [TCONS_00025258]"	chr17:49436-49495	hs|17p13.3	Agilent_HUMAN_G3V2	TCONS_00025258	TCONS_00025258	chr17	    49436	    49495	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14258_PI429285431	0.9203119	A	1.0011406	A	0.94551437678692	0	lncRNA	15915-1_{1..403}	lnc-CTR9-3:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTR9-3:9	chr11	 10928002	 10928404	+	lnc-CTR9-3	lnc-CTR9-3:9	XLOC_009065	linc-USP47-3	NA	NA	NA	inter
LNCA_21_P0001171	8.252185	P	8.218788	P	1.0234190548623	0	lncRNA	ENST00000457719	NA	NA	NA	NA	XLOC_000983	NA	ENST00000457719	THC2603214	NA	"BROAD Institute lincRNA (XLOC_000983), lincRNA [TCONS_00000620]"	chr1:119803136-119803077	hs|1p12	Agilent_HUMAN_G3V2	ENST00000457719	ENST00000457719	chr1	119803077	119803136	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8721_PI429285431	0.92414474	A	0.96062845	A	0.97502849699633	0	lncRNA	10264-1_{1..1882}	lnc-ALX4-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ALX4-8:2	chr11	 43290815	 43292696	-	lnc-ALX4-8	lnc-ALX4-8:2	ENSG00000251557	ENST00000511537	NA	NA	NA	inter
LNCA_24_P307599	1.2834716	A	1.2906375	A	0.995045291880958	0	lncRNA	XR_108823	XR_108823	XR_108823	100129703	Hs.664650	NAG20	NAG20	NA	NA	NA	"PREDICTED: Homo sapiens NAG20 (NAG20), miscRNA [XR_108823]"	chr7:137352938-137352879	hs|7q33	Agilent_HUMAN_G3V2	XR_108823	XR_108823	chr7	137352879	137352938	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009366	8.282778	P	8.294491	P	0.99191403578613	0	lncRNA	TCONS_00025779	NA	NA	NA	NA	XLOC_012586	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012586), lincRNA [TCONS_00025779]"	chr17:79353704-79353645	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_00025779	TCONS_00025779	chr17	 79353645	 79353704	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008992	6.047363	P	6.477617	P	0.742131114665172	0	lncRNA	TCONS_00024502	NA	NA	NA	NA	XLOC_011821	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011821), lincRNA [TCONS_00024502]"	chr16:87549478-87549537	hs|16q24.2	Agilent_HUMAN_G3V2	TCONS_00024502	TCONS_00024502	chr16	 87549478	 87549537	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31302_PI429285431	0.9237739	A	0.9131442	A	1.00739515669012	0	lncRNA	33087-1_{1..1280}	n337767|L23851|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|149|NULL|-1.2007100|-0.4267154	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337767|L23851|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|149|NULL|-1.2007100|-0.4267154	chr15	 54902050	 54903329	-	NA	NA	NA	NA	UNC13C	"hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-58.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60chr15:54892050-54913329"	NA	inner
LNCA_21_P0009323	4.2790146	P	5.022158	P	0.597436215926825	0	lncRNA	TCONS_00025631	NA	NA	NA	NA	XLOC_012467	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012467), lincRNA [TCONS_00025631]"	chr17:38276890-38276831	hs|17q21.1	Agilent_HUMAN_G3V2	TCONS_00025631	TCONS_00025631	chr17	 38276831	 38276890	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22285_PI429285431	2.494765	A	0.9271673	A	2.96410735379569	0	lncRNA	23885-1_{1..448}	lnc-PICALM-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PICALM-1:1	chr11	 85634622	 85635069	-	lnc-PICALM-1	lnc-PICALM-1:1	ENSG00000255005.1	RP11-90K17.2	CCDC83	NA	chr11:85624622-85631051	inter
LNCA_21_P0002102	0.89257133	A	0.88335764	A	1.00640688005774	0	lncRNA	ENST00000412312	NA	NA	NA	NA	XLOC_002314	NA	ENST00000412312	THC2766436	NA	"BROAD Institute lincRNA (XLOC_002314), lincRNA [TCONS_00003400]"	chr2:129338124-129338065	hs|2q14.3	Agilent_HUMAN_G3V2	ENST00000412312	ENST00000412312	chr2	129338065	129338124	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38667_PI429285431	0.9063685	A	1.1037784	A	0.872114884388162	0	lncRNA	39668-1_{1..1073}	n383955|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ygw.2||-1.1540100|-0.1335455	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383955|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ygw.2||-1.1540100|-0.1335455	chr20	 62439441	 62440513	+	NA	NA	NA	NA	ZBTB46	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20chr20:62429441-62436856"	NA	inter
LNCA_21_P0002179	0.8936859	A	0.8811426	A	1.00873225869265	0	lncRNA	TCONS_00003589	NA	NA	NA	NA	XLOC_001373	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001373), lincRNA [TCONS_00003589]"	chr2:18734407-18734466	hs|2p24.2	Agilent_HUMAN_G3V2	TCONS_00003589	TCONS_00003589	chr2	 18734407	 18734466	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005403	0.893893	A	0.8810252	A	1.00895917458575	0	lncRNA	TCONS_00013540	NA	NA	NA	NA	XLOC_006179	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006179), lincRNA [TCONS_00013540]"	chr7:95311388-95311447	hs|7q21.3	Agilent_HUMAN_G3V2	TCONS_00013540	TCONS_00013540	chr7	 95311388	 95311447	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21460_PI429285431	0.89847815	A	0.88511205	A	1.00930772447235	0	lncRNA	23078-1_{1..917}	lnc-RP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP1-1:1	chr8	 55474264	 55475180	+	lnc-RP1-1	lnc-RP1-1:1	ENSG00000254142.1	RP11-53M11.3	RP1	NA	chr8:55464264-55484467	inter
LNCA_21_P0007557	0.89749736	A	4.843434	P	0.0648865540214163	0	lncRNA	THC2667952	NA	NA	NA	NA	XLOC_009748	NA	NA	THC2667952	NA	"BROAD Institute lincRNA (XLOC_009748), lincRNA [TCONS_00020421]"	chr12:050324033-050324092	hs|12q13.12	Agilent_HUMAN_G3V2	THC2667952	THC2667952	chr12	 50324033	 50324092	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35957_PI429285431	1.6785175	A	2.3046138	A	0.647927232082835	0	lncRNA	37310-4_{9001..9679}	n344585|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_133|NULL|-1.7306400|-0.3500855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344585|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_133|NULL|-1.7306400|-0.3500855	chr12	 92376961	 92377639	-	NA	NA	NA	NA	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70"	NA	inner
CUST_14969_PI429285431	0.90211934	A	1.4008908	A	0.707709180809355	0	lncRNA	16631-2_{3001..3176}	lnc-MAPK8IP2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAPK8IP2-1:7	chr22	 51028699	 51028874	+	lnc-MAPK8IP2-1	lnc-MAPK8IP2-1:7	XLOC_014288	linc-MAPK8IP2	CHKB	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-49.30;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-30.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.31;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10chr22:51017387-51021428"	NA	inter
LNCA_21_P0012974	0.8996009	A	0.8837553	A	1.01104387119997	0	lncRNA	ENST00000511721	NA	NA	NA	NA	XLOC_l2_011924	NA	ENST00000511721	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011924), lincRNA [TCONS_l2_00023652]"	chr5:4967939-4967880	hs|5p15.32	Agilent_HUMAN_G3V2	ENST00000511721	ENST00000511721	chr5	  4967880	  4967939	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37008_PI429285431	0.91137695	A	0.90947425	A	1.00131972120707	0	lncRNA	38148-1_{1..1350}	n345465|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1014|NULL|-1.3148600|-0.2607634	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345465|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1014|NULL|-1.3148600|-0.2607634	chr1	155952169	155953518	-	NA	NA	NA	NA	ARHGEF2	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00chr1:155942169-155948336"	NA	inter
CUST_12111_PI429285431	1.8502159	A	1.672727	A	1.130913745857	0	lncRNA	13707-2_{3001..3933}	lnc-FAM84B-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM84B-8:1	chr8	128242644	128243576	-	lnc-FAM84B-8	lnc-FAM84B-8:1	XLOC_007215	linc-FAM84B-9	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60"	NA	inter
LNCA_21_P0008667	1.4932398	A	4.015272	P	0.174097549298006	0	lncRNA	TCONS_00024002	NA	NA	NA	NA	XLOC_011344	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011344), lincRNA [TCONS_00024002]"	chr15:89622671-89622730	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00024002	TCONS_00024002	chr15	 89622671	 89622730	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00325336	5.5331116	P	5.8885717	P	0.781620331350715	0	lncRNA	XR_109771	XR_109771	XR_109771	NA	NA	LOC100506774	uncharacterized LOC100506774	NA	THC2477614	NA	"PREDICTED: Homo sapiens hypothetical LOC100506774 (LOC100506774), miscRNA [XR_109771]"	chrX:73422990-73422931	hs|Xq13.2	Agilent_HUMAN_G3V2	XR_109771	XR_109771	chrX	 73422931	 73422990	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010608	2.2808056	A	2.4325464	A	0.900163642040986	0	lncRNA	TCONS_l2_00001148	NA	NA	NA	NA	XLOC_l2_000866	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000866), lincRNA [TCONS_l2_00001148]"	chr1:37611192-37611133	hs|1p34.3	Agilent_HUMAN_G3V2	TCONS_l2_00001148	TCONS_l2_00001148	chr1	 37611133	 37611192	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7177_PI429285431	0.9274701	A	0.92320764	A	1.00295888100379	0	lncRNA	7359-1_{1..301}	"transcript_id ""ENST00000489055.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000489055.2"" | genecode_v17"	chr2	140740253	140740553	+	ENSG00000240977.2	ENST00000489055.2	RN7SL283P	RN7SL283P-201	NA	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00"	NA	inter
LNCA_21_P0007422	6.831298	P	6.6034737	P	1.17106755294821	0	lncRNA	TCONS_00019806	NA	NA	NA	NA	XLOC_009606	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009606), lincRNA [TCONS_00019806]"	chr11:130650622-130650563	hs|11q24.3	Agilent_HUMAN_G3V2	TCONS_00019806	TCONS_00019806	chr11	130650563	130650622	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011689	1.7100185	A	1.6452508	A	1.0459165147536	0	lncRNA	TCONS_l2_00012439	NA	NA	NA	NA	XLOC_l2_006675	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006675), lincRNA [TCONS_l2_00012439]"	chr19:28427833-28447119	hs|19q11	Agilent_HUMAN_G3V2	TCONS_l2_00012439	TCONS_l2_00012439	chr19	 28427833	 28447119	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010688	0.9179761	A	0.9305562	A	0.99131804687705	0	lncRNA	ENST00000442292	NA	NA	NA	NA	XLOC_l2_000018	NA	ENST00000442292	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000018), lincRNA [TCONS_l2_00001953]"	chr1:998066-998125	hs|1p36.33	Agilent_HUMAN_G3V2	ENST00000442292	ENST00000442292	chr1	   998066	   998125	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006236	2.6829083	A	3.4667447	P	0.580820226590974	0	lncRNA	TCONS_00016206	NA	NA	NA	NA	XLOC_007596	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007596), lincRNA [TCONS_00016206]"	chr9:137112350-137112409	hs|9q34.2	Agilent_HUMAN_G3V2	TCONS_00016206	TCONS_00016206	chr9	137112350	137112409	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13047_PI429285431	1.4783703	A	1.8668066	A	0.763957189423104	0	lncRNA	14672-1_{1..335}	lnc-SOD2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SOD2-3:1	chr6	159804046	159804380	-	lnc-SOD2-3	lnc-SOD2-3:1	XLOC_005899	linc-TAGAP-6	NA	NA	NA	inter
CUST_46325_PI429285431	7.222676	P	6.6881704	P	1.44844569878977	0	lncRNA	50554-1_{1..3000}	"gi|373838739|ref|NR_046095.1| Homo sapiens dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis) (DACT1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373838739|ref|NR_046095.1| Homo sapiens dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis) (DACT1), transcript variant 4, non-coding RNA"	Chr14	 59105555	 59108554	+	51339	NR_046095.1	NA	NA	NA	NA	NA	inter
CUST_44592_PI429285431	1.5798051	A	2.3782754	A	0.574958487061501	0	lncRNA	49171-1_{1..3000}	"gi|374253824|ref|NR_046207.1| Homo sapiens solute carrier family 12 (sodium/potassium/chloride transporters), member 2 (SLC12A2), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|374253824|ref|NR_046207.1| Homo sapiens solute carrier family 12 (sodium/potassium/chloride transporters), member 2 (SLC12A2), transcript variant 3, non-coding RNA"	Chr5	127419483	127422482	+	6558	NR_046207.1	NA	NA	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00"	NA	inter
LNCA_21_P0008862	5.4732437	P	5.845574	P	0.772533660511365	0	lncRNA	THC2654585	NA	NA	NA	NA	XLOC_011545	NA	NA	THC2654585	NA	"BROAD Institute lincRNA (XLOC_011545), lincRNA [TCONS_00024185]"	chr15:080637280-080637221	hs|15q25.1	Agilent_HUMAN_G3V2	THC2654585	THC2654585	chr15	 80637221	 80637280	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012587	0.8967564	A	0.8979941	A	0.999142459632702	0	lncRNA	TCONS_l2_00020549	NA	NA	NA	NA	XLOC_l2_010691	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010691), lincRNA [TCONS_l2_00020549]"	chr4:63814772-63814831	hs|4q13.1	Agilent_HUMAN_G3V2	TCONS_l2_00020549	TCONS_l2_00020549	chr4	 63814772	 63814831	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25426_PI429285431	1.0260987	A	0.8940774	A	1.09582794517034	0	lncRNA	26956-1_{1..764}	lnc-DAPP1-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DAPP1-2:3	chr4	101116222	101116985	+	lnc-DAPP1-2	lnc-DAPP1-2:3	ENSG00000245322.2	RP11-15B17.1	DDIT4L	NA	chr4:101107027-101111655	inter
CUST_32756_PI429285431	2.529042	A	2.0683765	A	1.37617648743852	0	lncRNA	34393-1_{1..810}	n339391|BC040624|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1823|NULL|0.2392930|-0.1553833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n339391|BC040624|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1823|NULL|0.2392930|-0.1553833	chr3	 71338919	 71339728	+	NA	NA	NA	NA	FOXP1	"hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.81;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30chr3:71328919-71365005"	NA	inner
LNCA_21_P0005520	0.8926709	A	0.8857035	A	1.00484111417645	0	lncRNA	TCONS_00013910	NA	NA	NA	NA	XLOC_006551	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006551), lincRNA [TCONS_00013910]"	chr7:103642512-103642453	hs|7q22.1	Agilent_HUMAN_G3V2	TCONS_00013910	TCONS_00013910	chr7	103642453	103642512	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008087	0.89330834	A	0.88186	A	1.00796695320519	0	lncRNA	TCONS_00021852	NA	NA	NA	NA	XLOC_010446	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010446), lincRNA [TCONS_00021852]"	chr13:80145864-80145923	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00021852	TCONS_00021852	chr13	 80145864	 80145923	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3224620	0.8941729	A	0.8810679	A	1.0091250757532	0	lncRNA	XR_110266	XR_110266	XR_110266	100128908	Hs.578287	LOC100128908	uncharacterized LOC100128908	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100128908 (LOC100128908), miscRNA [XR_110266]"	chr14:23569690-23569631	hs|14q11.2	Agilent_HUMAN_G3V2	XR_110266	XR_110266	chr14	 23569631	 23569690	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014154	1.5094179	A	0.8807917	A	1.54609203301315	0	lncRNA	XR_108621	XR_108621	XR_108621	NA	NA	LOC100507367	uncharacterized LOC100507367	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507367 (LOC100507367), miscRNA [XR_108621]"	chr6:72017641-72017582	hs|6q13	Agilent_HUMAN_G3V2	XR_108621	XR_108621	chr6	 72017582	 72017641	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012111	1.4522787	A	5.0157237	P	0.0845855479623898	0	lncRNA	TCONS_l2_00016154	NA	NA	NA	NA	XLOC_l2_008546	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008546), lincRNA [TCONS_l2_00016154]"	chr20:10733767-10733826	hs|20p12.2	Agilent_HUMAN_G3V2	TCONS_l2_00016154	TCONS_l2_00016154	chr20	 10733767	 10733826	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15749_PI429285431	0.9862386	A	0.8843782	A	1.07315643916096	0	lncRNA	17437-1_{1..910}	lnc-SH2D7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SH2D7-2:1	chr15	 78438658	 78439567	+	lnc-SH2D7-2	lnc-SH2D7-2:1	XLOC_011319	linc-IDH3A	IDH3A	NA	chr15:78441719-78449502	inter
LNCA_21_P0013691	0.8993548	A	2.0686488	A	0.444638876681724	0	lncRNA	ENST00000433645	NA	NA	NA	NA	XLOC_l2_014721	NA	ENST00000433645	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014721), lincRNA [TCONS_l2_00029686]"	chr9:22687555-22687614	hs|9p21.3	Agilent_HUMAN_G3V2	ENST00000433645	ENST00000433645	chr9	 22687555	 22687614	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28025_PI429285431	0.90745866	A	0.8889826	A	1.01288898496104	0	lncRNA	29640-1_{1..1722}	n325287|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327324|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327324|-1.3259100|-0.3214866	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325287|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327324|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327324|-1.3259100|-0.3214866	chr2	 64687998	 64689719	+	NA	NA	NA	NA	HSPC159	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80chr2:64681327-64688517"	NA	inner
LNCA_21_P0010309	5.0075097	P	5.0434055	P	0.975425910033066	0	lncRNA	TCONS_00029212	NA	NA	NA	NA	XLOC_013923	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013923), lincRNA [TCONS_00029212]"	chr21:35555387-35561095	hs|21q22.11	Agilent_HUMAN_G3V2	TCONS_00029212	TCONS_00029212	chr21	 35555387	 35561095	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26079_PI429285431	6.934482	P	6.640147	P	1.22631958368209	0	lncRNA	27592-1_{1..1219}	lnc-THUMPD3-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THUMPD3-2:1	chr3	  9261151	  9262369	+	lnc-THUMPD3-2	lnc-THUMPD3-2:1	ENSG00000227929.2	SRGAP3-AS3	SRGAP3	NA	chr3:9251151-9271192	inner
CUST_43486_PI429285431	0.9248695	A	1.5563521	A	0.645512706749172	0	lncRNA	48280-1_{1..971}	"gi|397138868|ref|XR_159043.1| PREDICTED: Homo sapiens uncharacterized LOC100996570 (LOC100996570), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138868|ref|XR_159043.1| PREDICTED: Homo sapiens uncharacterized LOC100996570 (LOC100996570), misc_RNA"	Chr1	 61419415	 61420385	-	100996570	XR_159043.2	NA	NA	NA	NA	NA	inter
CUST_39076_PI429285431	2.7770913	A	1.9966832	A	1.71761667216921	0	lncRNA	40051-1_{1..2483}	n385562|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aes.1||1.3327200|-0.1364176	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385562|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aes.1||1.3327200|-0.1364176	chr9	 67792166	 67794648	+	NA	NA	NA	NA	LOC100132859	NA	chr9:67793360-67793752	inter
CUST_31877_PI429285431	0.92439365	A	0.92908835	A	0.996751170835166	0	lncRNA	33609-1_{1..765}	n338430|AK130854|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|827|NULL|-1.1121100|-0.2272283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338430|AK130854|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|827|NULL|-1.1121100|-0.2272283	chr14	 82071696	 82072460	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_3936_PI429285431	0.92206323	A	0.95260704	A	0.979051184110528	0	lncRNA	3906-1_{1..561}	"transcript_id ""ENST00000534604.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000534604.1"" | genecode_v17"	chr11	 45420998	 45421558	+	ENSG00000254651.1	ENST00000534604.1	RP11-430H10.3	RP11-430H10.3-001	NA	NA	NA	inter
LNCA_21_P0004903	0.91692686	A	2.2986348	A	0.383764205579822	0	lncRNA	TCONS_00011875	NA	NA	NA	NA	XLOC_005366	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005366), lincRNA [TCONS_00011875]"	chr6:82659519-82659578	hs|6q14.1	Agilent_HUMAN_G3V2	TCONS_00011875	TCONS_00011875	chr6	 82659519	 82659578	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15292_PI429285431	5.5955505	P	5.8109875	P	0.861285232318762	0	lncRNA	16969-1_{1..421}	lnc-OLFM4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-OLFM4-1:1	chr13	 53650459	 53650879	+	lnc-OLFM4-1	lnc-OLFM4-1:1	XLOC_010397	linc-PRR20A-5	NA	NA	NA	inter
CUST_37408_PI429285431	8.594972	P	8.485331	P	1.0789597149359	0	lncRNA	38514-1_{1..1338}	n345863|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1412|NULL|-1.6294400|-0.1722302	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345863|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1412|NULL|-1.6294400|-0.1722302	chr12	  8384726	  8386063	-	NA	NA	NA	NA	FAM90A1	NA	chr12:8374726-8380214	inter
LNCA_21_P0009295	7.073721	P	7.0558486	P	1.01246525531333	0	lncRNA	TCONS_00025555	NA	NA	NA	NA	XLOC_012383	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012383), lincRNA [TCONS_00025555]"	chr17:7967908-7967849	hs|17p13.1	Agilent_HUMAN_G3V2	TCONS_00025555	TCONS_00025555	chr17	  7967849	  7967908	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002356	0.8992664	A	0.9028925	A	0.997489735006441	0	lncRNA	TCONS_00004032	NA	NA	NA	NA	XLOC_001870	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001870), lincRNA [TCONS_00004032]"	chr2:220658824-220658883	hs|2q35	Agilent_HUMAN_G3V2	TCONS_00004032	TCONS_00004032	chr2	220658824	220658883	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7307_PI429285431	5.8528004	P	6.3847833	P	0.691603511906617	0	lncRNA	8465-1_{1..328}	"transcript_id ""ENST00000411367.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411367.1"" | genecode_v17"	chr14	 97104524	 97104851	-	ENSG00000223299.1	ENST00000411367.1	RN7SKP108	RN7SKP108-201	NA	NA	NA	inter
CUST_38902_PI429285431	3.6580944	P	2.8021924	A	1.80988997861675	0	lncRNA	39890-1_{1..2538}	n384946|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pas.1||-1.1104600|-0.2521524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384946|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pas.1||-1.1104600|-0.2521524	chr6	 52442104	 52444641	+	NA	NA	NA	NA	TRAM2	NA	chr6:52432104-52441862	inter
LNCA_21_P0009588	0.89284664	A	0.8838737	A	1.00623894973682	0	lncRNA	TCONS_00026574	NA	NA	NA	NA	XLOC_012893	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012893), lincRNA [TCONS_00026574]"	chr18:74334738-74334679	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026574	TCONS_00026574	chr18	 74334679	 74334738	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26186_PI429285431	4.277369	P	5.2304	P	0.516546094406279	0	lncRNA	27697-1_{1..395}	lnc-SYT1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SYT1-1:1	chr12	 79202057	 79202451	+	lnc-SYT1-1	lnc-SYT1-1:1	ENSG00000257948.1	RP11-123M21.1	NA	NA	NA	inter
LNCA_21_P0007510	0.8935543	A	0.8818605	A	1.00813846319874	0	lncRNA	TCONS_00020261	NA	NA	NA	NA	XLOC_010279	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010279), lincRNA [TCONS_00020261]"	chr12:133488922-133488863	hs|12q24.33	Agilent_HUMAN_G3V2	TCONS_00020261	TCONS_00020261	chr12	133488863	133488922	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9435_PI429285431	0.9062132	A	0.890942	A	1.01064141053519	0	lncRNA	10941-1_{1..1439}	lnc-C22orf34-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C22orf34-1:3	chr22	 50057709	 50059147	-	lnc-C22orf34-1	lnc-C22orf34-1:3	XLOC_014411	linc-CERK-2	NA	NA	NA	inter
LNCA_21_P0001775	6.442556	P	6.5029683	P	0.958990015598548	0	lncRNA	ENST00000529783	XR_109948	XR_109948	NA	Hs.503348	XLOC_001532	NA	ENST00000529783	THC2626362	NA	"PREDICTED: Homo sapiens hypothetical LOC100507171, transcript variant 2 (LOC100507171), miscRNA [XR_109948]"	chr2:74376098-74376157	hs|2p13.1	Agilent_HUMAN_G3V2	ENST00000529783	ENST00000529783	chr2	 74376098	 74376157	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17594_PI429285431	4.242586	P	5.1527815	P	0.532112979565302	0	lncRNA	19320-1_{1..398}	lnc-AC003101.1.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC003101.1.1-2:2	chr17	 29956929	 29957326	+	lnc-AC003101.1.1-2	lnc-AC003101.1.1-2:2	XLOC_012166	linc-SUZ12-3	NA	NA	NA	inter
CUST_22027_PI429285431	0.9074934	A	0.9056598	A	1.00127176267544	0	lncRNA	23635-1_{1..588}	lnc-DRD2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DRD2-1:2	chr11	113185052	113185639	-	lnc-DRD2-1	lnc-DRD2-1:2	ENSG00000255129.1	RP11-839D17.3	TTC12	NA	chr11:113185251-113195146	inter
LNCA_21_P0003637	0.8955288	A	1.3092161	A	0.750702243676538	0	lncRNA	TCONS_00008198	NA	NA	NA	NA	XLOC_003650	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003650), lincRNA [TCONS_00008198]"	chr4:113439551-113439610	hs|4q25	Agilent_HUMAN_G3V2	TCONS_00008198	TCONS_00008198	chr4	113439551	113439610	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3321934	2.6441064	A	3.233977	P	0.66440249679185	0	lncRNA	XR_133532	XR_133532	XR_133532	100133204	NA	C9orf147	chromosome 9 open reading frame 147	NA	NA	NA	"PREDICTED: Homo sapiens chromosome 9 open reading frame 147 (C9orf147), miscRNA [XR_133532]"	chr9:115241369-115241310	hs|9q32	Agilent_HUMAN_G3V2	XR_133532	XR_133532	chr9	115241310	115241369	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005088	3.9105308	P	2.639379	A	2.41354177832484	0	lncRNA	TCONS_00012364	NA	NA	NA	NA	XLOC_005924	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005924), lincRNA [TCONS_00012364]"	chr6:168187101-168187042	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012364	TCONS_00012364	chr6	168187042	168187101	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35588_PI429285431	7.715233	P	6.8414726	P	1.83243293716283	0	lncRNA	37003-1_{1..2409}	n342724|AB073602|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5227|NULL|-0.0525374|-0.2746812	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342724|AB073602|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5227|NULL|-0.0525374|-0.2746812	chr17	 74553856	 74556264	+	NA	NA	NA	NA	ST6GALNAC2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60chr17:74561461-74571663"	NA	inner
CUST_21311_PI429285431	1.1734585	A	0.9275821	A	1.1858129029202	0	lncRNA	22934-1_{1..499}	lnc-GXYLT1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GXYLT1-2:2	chr12	 41806203	 41806701	-	lnc-GXYLT1-2	lnc-GXYLT1-2:2	ENSG00000257228.1	RP11-413B19.2	PDZRN4	NA	chr12:41796203-41816279	inner
LNCA_21_P0001291	5.558535	P	6.0746784	P	0.699238535488476	0	lncRNA	TCONS_00000930	NA	NA	NA	NA	XLOC_000175	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000175), lincRNA [TCONS_00000930]"	chr1:47645313-47645573	hs|1p33	Agilent_HUMAN_G3V2	TCONS_00000930	TCONS_00000930	chr1	 47645313	 47645573	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014379	3.743507	P	3.534267	P	1.15607901045655	0	lncRNA	XR_109516	XR_109516	XR_109516	NA	NA	LOC100507372	uncharacterized LOC100507372	NA	THC2661496	NA	"PREDICTED: Homo sapiens hypothetical LOC100507372, transcript variant 1 (LOC100507372), miscRNA [XR_109516]"	chr19:37988244-37988185	hs|19q13.12	Agilent_HUMAN_G3V2	XR_109516	XR_109516	chr19	 37988185	 37988244	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42494_PI429285431	0.903443	A	0.88993186	A	1.00940919938357	0	lncRNA	45262-1_{1..81}	ENST00000391291 ncrna:snoRNA chromosome:GRCh37:16:23453162:23453242:1 gene:ENSG00000212593 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391291 ncrna:snoRNA chromosome:GRCh37:16:23453162:23453242:1 gene:ENSG00000212593 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 23453162	 23453242	+	ENSG00000212593	ENST00000391291	NA	NA	COG7	NA	chr16:23443162-23463242	inner
CUST_47838_PI429285431	5.582815	P	6.1421843	P	0.678598760501056	0	lncRNA	51745-1_{1..1421}	"gi|397140197|ref|XR_159175.1| PREDICTED: Homo sapiens uncharacterized LOC100996764 (LOC100996764), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397140197|ref|XR_159175.1| PREDICTED: Homo sapiens uncharacterized LOC100996764 (LOC100996764), misc_RNA"	NA	NA	NA	NA	NA	XR_159175.1	NA	NA	NA	NA	NA	Unknown
CUST_21394_PI429285431	0.97731227	A	2.0096252	A	0.488925674041441	0	lncRNA	23016-1_{1..1476}	lnc-CDYL2-6:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDYL2-6:3	chr16	 80574747	 80576222	-	lnc-CDYL2-6	lnc-CDYL2-6:3	ENSG00000259867.1	RP11-525K10.3	DYNLRB2	NA	chr16:80574854-80584541	inter
CUST_38551_PI429285431	4.8646445	P	4.6781926	P	1.13796161942468	0	lncRNA	39558-1_{1..2468}	n383328|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002lch.1||0.5926530|-0.1952263	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383328|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002lch.1||0.5926530|-0.1952263	chr18	 44247784	 44250251	-	NA	NA	NA	NA	ST8SIA5	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chr18:44259081-44260252"	NA	inter
LNCA_21_P0011006	2.4367888	A	1.985801	A	1.36697589220401	0	lncRNA	TCONS_l2_00004957	NA	NA	NA	NA	XLOC_l2_002611	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002611), lincRNA [TCONS_l2_00004957]"	chr11:32133721-32133662	hs|11p13	Agilent_HUMAN_G3V2	TCONS_l2_00004957	TCONS_l2_00004957	chr11	 32133662	 32133721	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8116_PI429285431	0.91735196	A	1.0916348	A	0.886207941318772	0	lncRNA	9720-1_{1..583}	lnc-CRYBA4-1:33	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CRYBA4-1:33	chr22	 27113216	 27113798	+	lnc-CRYBA4-1	lnc-CRYBA4-1:33	ENSG00000244625	XLOC_014192	NA	NA	NA	inter
CUST_51800_PI429285431	2.0483284	A	2.7104096	A	0.631965978935957	0	lncRNA	55349-1_{1..362}	hg19_lincRNAsTranscripts_TCONS_l2_00012917 range=chr19:20317538-20349229 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012917 range=chr19:20317538-20349229 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 20317538	 20317899	-	NA	NA	NA	NA	ZNF486	NA	chr19:20307538-20308984	inter
CUST_32326_PI429285431	3.7777505	P	4.011681	P	0.850315121927835	0	lncRNA	34008-1_{1..1957}	n338905|AX746478|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1331|NULL|1.0883000|-0.1879251	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338905|AX746478|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1331|NULL|1.0883000|-0.1879251	chr19	 50988163	 50990119	+	NA	NA	NA	NA	FAM71E1	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40chr19:50978163-50980003"	NA	inter
CUST_7237_PI429285431	2.2733352	A	2.55729	A	0.821336433026849	0	lncRNA	7824-1_{1..304}	"transcript_id ""ENST00000410781.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000410781.1"" | genecode_v17"	chr6	117622618	117622921	+	ENSG00000222713.1	ENST00000410781.1	RN7SKP51	RN7SKP51-201	ROS1	NA	chr6:117612618-117632921	inner
CUST_376_PI429201921	3.656918	P	2.9718952	A	1.60772738941645	0	lncRNA	242-3_...	TC6_ssto_hap7000183.hg.1	TCONS_l2_00031158-XLOC_l2_016056 // Broad TUCP // linc-KLHL22-3 chr6_ssto_hap7:+:4293227-4302272 // chr6_ssto_hap7 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr6_ssto_hap7:+:4293227-4302272	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00031158-XLOC_l2_016056	linc-KLHL22-3	chr6_ssto_hap7	  4293227	  4302272	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010437	4.304602	P	5.290032	P	0.505075161494395	0	lncRNA	TCONS_00029688	NA	NA	NA	NA	XLOC_014356	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014356), lincRNA [TCONS_00029688]"	chr22:34745933-34745874	hs|22q12.3	Agilent_HUMAN_G3V2	TCONS_00029688	TCONS_00029688	chr22	 34745874	 34745933	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13409_PI429285431	1.6081978	A	1.5875882	A	1.0143880113151	0	lncRNA	15046-1_{1..419}	lnc-TMEM161B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TMEM161B-3:1	chr5	 87794490	 87794908	-	lnc-TMEM161B-3	lnc-TMEM161B-3:1	XLOC_004917	linc-TMEM161B-3	NA	NA	NA	inter
CUST_156_PI429201921	0.897857	A	1.0379994	A	0.907429583823214	0	lncRNA	136-1_{1..3000}	TC07002181.hg.1	 TCONS_l2_00025702-XLOC_l2_013301 // Broad TUCP // linc-MACC1-BP chr7:+:20257234-20261236 // chr7 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00027065-XLOC_l2_013301 // Broad TUCP // linc-MACC1-BP chr7:+:20257215-20261135 // chr7 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00027064-XLOC_l2_013301 // Broad TUCP // linc-MACC1-BP chr7:+:20257214-20259207 // chr7 // 100 // 100 // 0 // --- // 0 ///TCONS_l2_00027063-XLOC_l2_013301 // Broad TUCP // linc-MACC1-BP chr7:+:20257208-20261315 // chr7 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00025703-XLOC_l2_013301 // Broad TUCP // linc-MACC1-BP chr7:+:20257420-20261314 // chr7 // 100 // 100 // 0 // --- // 0/// TCONS_l2_00025701-XLOC_l2_013301 // Broad TUCP // linc-MACC1-BP chr7:+:20257233-20261304 // chr7 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr7:+:20257208-20261315	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00027063-XLOC_l2_013301	linc-MACC1-BP	chr7	 20257208	 20261315	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008890	5.892491	P	6.4429874	P	0.682785156426275	0	lncRNA	ENST00000432973	NA	NA	NA	NA	XLOC_011679	NA	ENST00000432973	NA	NA	"BROAD Institute lincRNA (XLOC_011679), lincRNA [TCONS_00024289]"	chr16:26345647-26345706	hs|16p12.1	Agilent_HUMAN_G3V2	ENST00000432973	ENST00000432973	chr16	 26345647	 26345706	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45206_PI429285431	0.9071131	A	0.90374804	A	1.00233520420341	0	lncRNA	49669-1_{1..940}	"gi|300795749|ref|NR_034103.1| Homo sapiens uncharacterized LOC100130155 (LOC100130155), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300795749|ref|NR_034103.1| Homo sapiens uncharacterized LOC100130155 (LOC100130155), non-coding RNA"	Chr8	 65289884	 65290823	+	100130155	NR_034103.1	NA	NA	NA	NA	NA	inter
CUST_40242_PI429285431	3.2124572	P	3.2830138	P	0.952270535743623	0	lncRNA	41060-1_{1..565}	n408150|NR_028119|lncRNA|Homosapiens||RefGeneNoncode|NR_028119||-1.0240900|-0.1718120	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n408150|NR_028119|lncRNA|Homosapiens||RefGeneNoncode|NR_028119||-1.0240900|-0.1718120	chrX	 47518231	 47518795	+	NA	NA	NA	NA	ELK1	"hg19_refFlat_UXT:range=chrX:47511241-475183265'pad=0,hg19_refFlat_UXT:range=chrX:47511241-475183265'pad=0 3'pad=0 strand=- repeatMasking=none,-104.60;hg19_refFlat_UXT:range=chrX:47511241-475183625'pad=0,hg19_refFlat_UXT:range=chrX:47511241-475183625'pad=0 3'pad=0 strand=- repeatMasking=none,-104.60chrX:47508231-47510003"	NA	inner
CUST_37302_PI429285431	2.4824088	A	2.6701374	A	0.877986949106872	0	lncRNA	38410-2_{3001..4744}	n345745|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1294|NULL|-1.3244600|-0.3196945	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345745|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1294|NULL|-1.3244600|-0.3196945	chr7	 75708817	 75710560	-	NA	NA	NA	NA	MDH2	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70chr7:75695817-75695931"	NA	inter
LNCA_21_P0004508	2.0147429	A	1.8657352	A	1.10880656154657	0	lncRNA	TCONS_00010712	NA	NA	NA	NA	XLOC_004420	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004420), lincRNA [TCONS_00010712]"	chr5:70966370-70966429	hs|5q13.2	Agilent_HUMAN_G3V2	TCONS_00010712	TCONS_00010712	chr5	 70966370	 70966429	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008032	0.89961326	A	0.8831498	A	1.01147696158541	0	lncRNA	TCONS_00021723	NA	NA	NA	NA	XLOC_010306	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010306), lincRNA [TCONS_00021723]"	chr13:23682672-23682731	hs|13q12.12	Agilent_HUMAN_G3V2	TCONS_00021723	TCONS_00021723	chr13	 23682672	 23682731	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50175_PI429285431	1.1189775	A	1.1108258	A	1.00566632108241	0	lncRNA	53901-1_{1..536}	hg19_lincRNAsTranscripts_TCONS_l2_00029235 range=chr9:32724131-32761233 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029235 range=chr9:32724131-32761233 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 32724131	 32724666	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005825	2.3363535	A	5.558916	P	0.107130226864563	0	lncRNA	ENST00000521030	NA	NA	NA	NA	XLOC_007065	NA	ENST00000521030	THC2636096	NA	"BROAD Institute lincRNA (XLOC_007065), lincRNA [TCONS_00014985]"	chr8:40190790-40190731	hs|8p11.21	Agilent_HUMAN_G3V2	ENST00000521030	ENST00000521030	chr8	 40190731	 40190790	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3319580	4.1353445	P	4.670351	P	0.690155567225304	0	lncRNA	XR_132526	XR_132526	XR_132526	NA	Hs.713360	NA	NA	NA	THC2486001	NA	"PREDICTED: Homo sapiens hypothetical LOC100132080 (LOC100132080), miscRNA [XR_132526]"	chr7:539803-539862	hs|7p22.3	Agilent_HUMAN_G3V2	XR_132526	XR_132526	chr7	   539803	   539862	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001809	2.8927155	A	3.0225675	A	0.913925201152673	0	lncRNA	ENST00000444079	NA	NA	NA	NA	XLOC_001308	NA	ENST00000444079	NA	NA	"BROAD Institute lincRNA (XLOC_001308), lincRNA [TCONS_00002792]"	chr2:560464-560523	hs|2p25.3	Agilent_HUMAN_G3V2	ENST00000444079	ENST00000444079	chr2	   560464	   560523	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39571_PI429285431	1.5718694	A	1.0515536	A	1.43426916926796	0	lncRNA	40515-1_{1..950}	n387541|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011hhf.1||-1.2120100|-0.1721363	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387541|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011hhf.1||-1.2120100|-0.1721363	chr6	  4675352	  4676301	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014057	2.4707832	A	2.5459998	A	0.949199601525186	0	lncRNA	ENST00000451759	XR_108295	XR_108295	NA	NA	LOC100505773	NA	ENST00000451759	THC2526838	NA	"PREDICTED: Homo sapiens hypothetical LOC100505773 (LOC100505773), miscRNA [XR_108295]"	chr1:163214437-163214378	hs|1q23.3	Agilent_HUMAN_G3V2	ENST00000451759	ENST00000451759	chr1	163214378	163214437	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1048_PI429285431	1.1802657	A	1.5221546	A	0.789007598924408	0	lncRNA	1038-1_{1..528}	"transcript_id ""ENST00000413991.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413991.1"" | genecode_v17"	chr2	121300485	121301012	-	ENSG00000237614.1	ENST00000413991.1	AC073257.2	AC073257.2-001	NA	NA	NA	inter
CUST_16702_PI429285431	1.3597414	A	0.9019529	A	1.37343487225441	0	lncRNA	18407-1_{1..393}	lnc-ZFAT-5:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZFAT-5:2	chr8	137255322	137255714	-	lnc-ZFAT-5	lnc-ZFAT-5:2	XLOC_007235	linc-ZFAT-4	NA	NA	NA	inter
LNCA_21_P0014227	0.9066893	A	0.9144021	A	0.994668159416147	0	lncRNA	XR_108933	XR_108933	XR_108933	NA	Hs.729436	LOC100506331	uncharacterized LOC100506331	NA	THC2492404	NA	"PREDICTED: Homo sapiens hypothetical LOC100506331 (LOC100506331), miscRNA [XR_108933]"	chr9:15890618-15890677	hs|9p22.3	Agilent_HUMAN_G3V2	XR_108933	XR_108933	chr9	 15890618	 15890677	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41799_PI429285431	4.990972	P	5.1570497	P	0.891262493402574	0	lncRNA	43382-1_{1..95}	ENST00000384983 ncrna:miRNA chromosome:GRCh37:4:11370451:11370545:1 gene:ENSG00000207716 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384983 ncrna:miRNA chromosome:GRCh37:4:11370451:11370545:1 gene:ENSG00000207716 gene_biotype:miRNA transcript_biotype:miRNA	chr4	 11370451	 11370545	+	ENSG00000207716	ENST00000384983	NA	NA	NA	NA	NA	inter
CUST_26086_PI429285431	5.1365304	P	5.152179	P	0.989211831263974	0	lncRNA	27599-1_{1..2764}	lnc-EXOSC6-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-EXOSC6-3:2	chr16	 70099659	 70102422	-	lnc-EXOSC6-3	lnc-EXOSC6-3:2	ENSG00000196696.7	PDXDC2P	NA	NA	NA	inter
LNCA_21_P0012296	4.9280987	P	5.5518317	P	0.648989481032143	0	lncRNA	TCONS_l2_00017993	NA	NA	NA	NA	XLOC_l2_009510	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009510), lincRNA [TCONS_l2_00017993]"	chr22:27620695-27620636	hs|22q12.1	Agilent_HUMAN_G3V2	TCONS_l2_00017993	TCONS_l2_00017993	chr22	 27620636	 27620695	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014825	2.639978	A	4.407688	P	0.293674519173531	0	lncRNA	XR_132672	XR_132672	XR_132672	NA	NA	LOC100652854	uncharacterized LOC100652854	ENST00000443171	THC2688623	NA	"PREDICTED: Homo sapiens hypothetical LOC100652854 (LOC100652854), miscRNA [XR_132672]"	chr20:32375243-32375184	hs|20q11.22	Agilent_HUMAN_G3V2	XR_132672	XR_132672	chr20	 32375184	 32375243	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004482	0.89364594	A	0.88887954	A	1.00330928033916	0	lncRNA	TCONS_00010605	NA	NA	NA	NA	XLOC_004256	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004256), lincRNA [TCONS_00010605]"	chr5:2918933-2919183	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00010605	TCONS_00010605	chr5	  2918933	  2919183	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7561_PI429285431	0.89948696	A	0.89109725	A	1.00583224553601	0	lncRNA	9197-1_{1..2190}	lnc-HEXA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HEXA-1:1	chr15	 72774019	 72776208	-	lnc-HEXA-1	lnc-HEXA-1:1	ENSG00000247056	ENST00000501211	ARIH1	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-20.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-66.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10chr15:72766667-72786168"	NA	inner
LNCA_21_P0005327	0.895445	A	0.88111115	A	1.00998498834107	0	lncRNA	ENST00000431071	NA	NA	NA	NA	XLOC_006580	NA	ENST00000431071	NA	NA	"BROAD Institute lincRNA (XLOC_006580), lincRNA [TCONS_00013242]"	chr7:119344669-119344610	hs|7q31.31	Agilent_HUMAN_G3V2	ENST00000431071	ENST00000431071	chr7	119344610	119344669	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003836	0.89630985	A	0.881109	A	1.01059212992649	0	lncRNA	TCONS_00008798	NA	NA	NA	NA	XLOC_003555	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003555), lincRNA [TCONS_00008798]"	chr4:63003480-63003539	hs|4q13.1	Agilent_HUMAN_G3V2	TCONS_00008798	TCONS_00008798	chr4	 63003480	 63003539	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8348_PI429285431	0.91785955	A	0.91814315	A	0.999803442779495	0	lncRNA	9927-2_{3001..3691}	lnc-ATXN7-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ATXN7-8:1	chr3	 64788141	 64788831	+	lnc-ATXN7-8	lnc-ATXN7-8:1	ENSG00000241684	ADAMTS9-AS2	NA	"hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40"	NA	inter
LNCA_21_P0001252	6.473131	P	6.5339065	P	0.958748619236617	0	lncRNA	TCONS_00000801	NA	NA	NA	NA	XLOC_000017	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000017), lincRNA [TCONS_00000801]"	chr1:1318057-1318116	hs|1p36.33	Agilent_HUMAN_G3V2	TCONS_00000801	TCONS_00000801	chr1	  1318057	  1318116	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008901	0.9003346	A	0.884078	A	1.01133194193912	0	lncRNA	TCONS_00024320	NA	NA	NA	NA	XLOC_011633	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011633), lincRNA [TCONS_00024320]"	chr16:4305661-4305720	hs|16p13.3	Agilent_HUMAN_G3V2	TCONS_00024320	TCONS_00024320	chr16	  4305661	  4305720	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21149_PI429285431	1.7054725	A	0.89765847	A	1.75055699002832	0	lncRNA	22772-1_{1..815}	lnc-C17orf89-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf89-1:2	chr17	 79205658	 79206472	+	lnc-C17orf89-1	lnc-C17orf89-1:2	ENSG00000260005.2	AC027601.1	AZI1	"hg19_refFlat_ENTHD2:range=chr17:79202728-792128335'pad=0,hg19_refFlat_ENTHD2:range=chr17:79202728-792128335'pad=0 3'pad=0 strand=- repeatMasking=none,-103.50chr17:79195658-79196751"	NA	inner
LNCA_21_P0001444	3.5032923	P	2.6533222	A	1.80246356859559	0	lncRNA	TCONS_00001347	NA	NA	NA	NA	XLOC_000638	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000638), lincRNA [TCONS_00001347]"	chr1:242074839-242074898	hs|1q43	Agilent_HUMAN_G3V2	TCONS_00001347	TCONS_00001347	chr1	242074839	242074898	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001560	0.89923996	A	0.8869666	A	1.00854353432245	0	lncRNA	TCONS_00001612	NA	NA	NA	NA	XLOC_000943	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000943), lincRNA [TCONS_00001612]"	chr1:102852703-102852644	hs|1p21.1	Agilent_HUMAN_G3V2	TCONS_00001612	TCONS_00001612	chr1	102852644	102852703	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002447	1.1084394	A	0.8851916	A	1.16735859229601	0	lncRNA	TCONS_00004271	NA	NA	NA	NA	XLOC_002113	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002113), lincRNA [TCONS_00004271]"	chr2:61971244-61971185	hs|2p15	Agilent_HUMAN_G3V2	TCONS_00004271	TCONS_00004271	chr2	 61971185	 61971244	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007100	0.95498973	A	2.6730528	A	0.303956532500601	0	lncRNA	TCONS_00018925	NA	NA	NA	NA	XLOC_008791	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008791), lincRNA [TCONS_00018925]"	chr10:44274147-44273261	hs|10q11.21	Agilent_HUMAN_G3V2	TCONS_00018925	TCONS_00018925	chr10	 44273261	 44274147	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51140_PI429285431	1.195128	A	2.2656298	A	0.476153353958958	0	lncRNA	54767-2_{3001..3734}	hg19_lincRNAsTranscripts_TCONS_l2_00007731 range=chr14:53651868-53785175 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00007731 range=chr14:53651868-53785175 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr14	 53654868	 53655601	+	NA	NA	NA	NA	NA	"hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10"	NA	inter
CUST_39029_PI429285431	1.2300413	A	0.95916027	A	1.20654441947698	0	lncRNA	40009-1_{1..1630}	n385387|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xnc.2||2.8102600|-0.3393064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n385387|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003xnc.2||2.8102600|-0.3393064	chr8	 39172181	 39173810	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_2314_PI429285431	0.921713	A	0.91585934	A	1.00406569051097	0	lncRNA	2306-1_{1..570}	"transcript_id ""ENST00000512927.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512927.1"" | genecode_v17"	chr5	113391703	113392272	+	ENSG00000251628.1	ENST00000512927.1	RP11-371M22.1	RP11-371M22.1-001	NA	NA	NA	inter
CUST_13134_PI429285431	5.6411433	P	5.599332	P	1.0294054316167	0	lncRNA	14762-1_{1..1158}	lnc-SETD6-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SETD6-8:1	chr16	 62163545	 62164702	+	lnc-SETD6-8	lnc-SETD6-8:1	XLOC_011747	linc-CDH5-8	NA	NA	NA	inter
CUST_33647_PI429285431	4.654778	P	3.1633325	A	2.81170551279233	0	lncRNA	35211-2_{3001..5009}	n340408|BC035585|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2869|NULL|17.8124000|-0.0829106	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340408|BC035585|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2869|NULL|17.8124000|-0.0829106	chr5	 14147543	 14149551	+	NA	NA	NA	NA	TRIO	NA	chr5:14143829-14429987	inner
LNCA_21_P0010069	4.462519	P	4.706613	P	0.844345871571232	0	lncRNA	THC2751630	NA	NA	NA	NA	XLOC_013835	NA	NA	THC2751630	NA	"BROAD Institute lincRNA (XLOC_013835), lincRNA [TCONS_00028462]"	NA	NA	Agilent_HUMAN_G3V2	THC2751630	THC2751630	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34332_PI429285431	4.131985	P	4.2252064	P	0.937427225224507	0	lncRNA	35825-1_{1..635}	n341197|Y11177|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3663|NULL|-0.9554090|-0.3931717	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341197|Y11177|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3663|NULL|-0.9554090|-0.3931717	chr7	 19154853	 19155487	+	NA	NA	NA	NA	TWIST1	NA	chr7:19155091-19157295	inner
CUST_20390_PI429285431	0.9145996	A	0.9143174	A	1.00019562526648	0	lncRNA	22032-1_{1..3000}	lnc-PDK3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-PDK3-1:1	chrX	 24563633	 24566632	+	lnc-PDK3-1	lnc-PDK3-1:1	ENSG00000260822.1	GS1-358P8.4	PDK3	NA	chrX:24553633-24568583	inner
CUST_22119_PI429285431	3.005439	A	2.8751943	A	1.09447932356577	0	lncRNA	23723-1_{1..813}	lnc-TMBIM6-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMBIM6-1:4	chr12	 50225742	 50226554	+	lnc-TMBIM6-1	lnc-TMBIM6-1:4	ENSG00000258057.1	RP11-70F11.6	NCKAP5L	NA	chr12:50215742-50222208	inter
CUST_42276_PI429285431	0.9063994	A	0.909283	A	0.998003236979138	0	lncRNA	44887-1_{1..85}	ENST00000459482 ncrna:snoRNA chromosome:GRCh37:15:46643860:46643944:-1 gene:ENSG00000238819 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000459482 ncrna:snoRNA chromosome:GRCh37:15:46643860:46643944:-1 gene:ENSG00000238819 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 46643860	 46643944	-	ENSG00000238819	ENST00000459482	NA	NA	NA	NA	NA	inter
LNCA_21_P0014386	6.034272	P	6.315138	P	0.823096792375993	0	lncRNA	XR_109556	XR_109556	XR_109556	NA	NA	LOC100507004	uncharacterized LOC100507004	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507004 (LOC100507004), miscRNA [XR_109556]"	chr19:4800970-4800446	hs|19p13.3	Agilent_HUMAN_G3V2	XR_109556	XR_109556	chr19	  4800446	  4800970	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1727_PI429285431	0.91243	A	0.89679897	A	1.01089351125173	0	lncRNA	1713-1_{1..426}	"transcript_id ""ENST00000510420.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000510420.1"" | genecode_v17"	chr4	 31508288	 31508713	+	ENSG00000249882.1	ENST00000510420.1	RP11-665I14.1	RP11-665I14.1-001	NA	NA	NA	inter
LNCA_21_P0010245	5.0883627	P	5.025179	P	1.04476878599255	0	lncRNA	TCONS_00029019	NA	NA	NA	NA	XLOC_013942	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013942), lincRNA [TCONS_00029019]"	chr21:40689325-40689384	hs|21q22.2	Agilent_HUMAN_G3V2	TCONS_00029019	TCONS_00029019	chr21	 40689325	 40689384	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008513	0.8945098	A	0.8817267	A	1.00889994076912	0	lncRNA	ENST00000553312	NA	BC055421	NA	Hs.586850	XLOC_010828	NA	ENST00000553312	THC2522835	NA	"BROAD Institute lincRNA (XLOC_010828), lincRNA [TCONS_00022989]"	chr14:52285956-52286015	hs|14q22.1	Agilent_HUMAN_G3V2	ENST00000553312	ENST00000553312	chr14	 52285956	 52286015	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004224	0.89469385	A	0.88159096	A	1.00912359986793	0	lncRNA	TCONS_00009865	NA	NA	NA	NA	XLOC_004280	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004280), lincRNA [TCONS_00009865]"	chr5:7387631-7387690	hs|5p15.31	Agilent_HUMAN_G3V2	TCONS_00009865	TCONS_00009865	chr5	  7387631	  7387690	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51862_PI429285431	4.230923	P	3.6516201	P	1.49412712256922	0	lncRNA	55414-1_{1..1239}	hg19_lincRNAsTranscripts_TCONS_l2_00012645 range=chr19:52097833-52106091 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012645 range=chr19:52097833-52106091 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 52097833	 52099071	+	NA	NA	NA	NA	ZNF175	NA	chr19:52087833-52092991	inter
LNCA_21_P0004068	3.6645277	P	3.9283109	P	0.832900925087353	0	lncRNA	TCONS_00009526	NA	NA	NA	NA	XLOC_004581	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004581), lincRNA [TCONS_00009526]"	chr5:141231623-141231682	hs|5q31.3	Agilent_HUMAN_G3V2	TCONS_00009526	TCONS_00009526	chr5	141231623	141231682	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001143	0.89831305	A	2.0598953	A	0.447022003129811	0	lncRNA	ENST00000427806	NA	NA	NA	NA	XLOC_000873	NA	ENST00000427806	NA	NA	"BROAD Institute lincRNA (XLOC_000873), lincRNA [TCONS_00000550]"	chr1:77223982-77223812	hs|1p31.1	Agilent_HUMAN_G3V2	ENST00000427806	ENST00000427806	chr1	 77223812	 77223982	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14448_PI429285431	1.0962653	A	2.0512726	A	0.515838979512036	0	lncRNA	16111-1_{1..474}	lnc-MYO16-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYO16-4:1	chr13	110382305	110382778	+	lnc-MYO16-4	lnc-MYO16-4:1	XLOC_010494	linc-COL4A2-4	NA	NA	NA	inter
CUST_8999_PI429285431	0.90174633	A	0.88662004	A	1.01053990280986	0	lncRNA	10528-2_{3001..3276}	lnc-ARHGEF10L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARHGEF10L-1:1	chr1	 17875452	 17875727	+	lnc-ARHGEF10L-1	lnc-ARHGEF10L-1:1	ENSG00000249753	ENST00000509615	ARHGEF10L	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90chr1:17866330-17884245"	NA	inner
CUST_20868_PI429285431	0.9038675	A	0.8886033	A	1.01063650688437	0	lncRNA	22499-1_{1..428}	lnc-FAM163A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-FAM163A-1:2	chr1	179711490	179711917	+	lnc-FAM163A-1	lnc-FAM163A-1:2	ENSG00000243062.1	RP11-12M5.1	FAM163A	NA	chr1:179712298-179721832	inter
LNCA_21_P0005083	0.89707124	A	0.8872721	A	1.00681536588264	0	lncRNA	TCONS_00012356	NA	NA	NA	NA	XLOC_005915	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005915), lincRNA [TCONS_00012356]"	chr6:165241093-165219186	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012356	TCONS_00012356	chr6	165219186	165241093	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38221_PI429285431	7.5780816	P	8.060191	P	0.715930079348329	0	lncRNA	39285-1_{1..1481}	n381596|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lxx.2||3.5564100|-0.2031855	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n381596|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001lxx.2||3.5564100|-0.2031855	chr11	  3402190	  3403670	+	NA	NA	NA	NA	ZNF195	NA	chr11:3392190-3400452	inter
LNCA_21_P0013036	0.96317434	A	0.9858066	A	0.984434920493103	0	lncRNA	TCONS_l2_00024424	NA	NA	NA	NA	XLOC_l2_012724	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012724), lincRNA [TCONS_l2_00024424]"	chr6:132929840-132929899	hs|6q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00024424	TCONS_l2_00024424	chr6	132929840	132929899	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51595_PI429285431	2.610483	A	3.0608277	P	0.731867963454603	0	lncRNA	55160-1_{1..702}	hg19_lincRNAsTranscripts_TCONS_l2_00010632 range=chr17:21904035-21909831 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010632 range=chr17:21904035-21909831 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 21904035	 21904736	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33280_PI429285431	0.93459225	A	0.91858387	A	1.01115795421942	0	lncRNA	34864-1_{1..2122}	n339990|BC040987|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2443|NULL|-0.8397840|-0.3630650	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339990|BC040987|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2443|NULL|-0.8397840|-0.3630650	chr4	 48638866	 48640987	-	NA	NA	NA	NA	FRYL	NA	chr4:48628866-48782316	inner
LNCA_21_P0001673	5.0373793	P	5.665586	P	0.646980125479346	0	lncRNA	THC2785820	NA	NA	NA	NA	XLOC_000152	NA	NA	THC2785820	NA	"BROAD Institute lincRNA (XLOC_000152), lincRNA [TCONS_00001989]"	chr1:039508451-039508510	hs|1p34.3	Agilent_HUMAN_G3V2	THC2785820	THC2785820	chr1	 39508451	 39508510	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33496_PI429285431	1.4791012	A	0.9174005	A	1.47600816281219	0	lncRNA	35068-1_{1..1586}	n340235|CR610181|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2696|NULL|-0.5802580|-0.1381845	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340235|CR610181|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2696|NULL|-0.5802580|-0.1381845	chr4	141071317	141072902	-	NA	NA	NA	NA	MAML3	NA	chr4:141061317-141075233	inner
LNCA_21_P0009802	0.93528575	A	1.3048413	A	0.774020912098112	0	lncRNA	TCONS_00027310	NA	NA	NA	NA	XLOC_013308	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013308), lincRNA [TCONS_00027310]"	chr19:35341771-35341712	hs|19q13.11	Agilent_HUMAN_G3V2	TCONS_00027310	TCONS_00027310	chr19	 35341712	 35341771	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012578	0.9301444	A	0.9932881	A	0.957176113681019	0	lncRNA	TCONS_l2_00020446	NA	NA	NA	NA	XLOC_l2_010602	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010602), lincRNA [TCONS_l2_00020446]"	chr4:23122971-23123030	hs|4p15.2	Agilent_HUMAN_G3V2	TCONS_l2_00020446	TCONS_l2_00020446	chr4	 23122971	 23123030	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007865	1.5846901	A	2.14405	A	0.678603181982346	0	lncRNA	TCONS_00021257	NA	NA	NA	NA	XLOC_009955	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009955), lincRNA [TCONS_00021257]"	chr12:131246917-131246976	hs|12q24.33	Agilent_HUMAN_G3V2	TCONS_00021257	TCONS_00021257	chr12	131246917	131246976	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33645_PI429285431	0.90930015	A	0.91553575	A	0.995687138655039	0	lncRNA	35210-1_{1..340}	n340407|AF009277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2868|NULL|-1.0708700|-0.3115545	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340407|AF009277|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2868|NULL|-1.0708700|-0.3115545	chr5	 11278065	 11278404	-	NA	NA	NA	NA	CTNND2	NA	chr5:11268065-11288405	inner
LNCA_21_P0005452	6.258831	P	6.5071135	P	0.84189808196973	0	lncRNA	TCONS_00013653	NA	NA	NA	NA	XLOC_006309	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006309), lincRNA [TCONS_00013653]"	chr7:156714711-156714770	hs|7q36.3	Agilent_HUMAN_G3V2	TCONS_00013653	TCONS_00013653	chr7	156714711	156714770	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00322953	4.3528347	P	4.5773373	P	0.855890061240941	0	lncRNA	ENST00000450531	NA	NA	NA	NA	XLOC_002319	NA	ENST00000450531	NA	NA	"BROAD Institute lincRNA (XLOC_002319), lincRNA [TCONS_00003402]"	chr2:130626885-130626826	hs|2q21.1	Agilent_HUMAN_G3V2	ENST00000450531	ENST00000450531	chr2	130626826	130626885	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004624	4.0896826	P	4.155864	P	0.955162829619859	0	lncRNA	ENST00000440848	NA	NA	NA	NA	XLOC_005128	NA	ENST00000440848	NA	NA	"BROAD Institute lincRNA (XLOC_005128), lincRNA [TCONS_00011252]"	chr6:2640097-2640156	hs|6p25.2	Agilent_HUMAN_G3V2	ENST00000440848	ENST00000440848	chr6	  2640097	  2640156	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42397_PI429285431	0.9050672	A	0.90500724	A	1.00004156196862	0	lncRNA	45092-1_{1..70}	ENST00000391309 ncrna:snoRNA chromosome:GRCh37:X:113260261:113260330:1 gene:ENSG00000212611 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391309 ncrna:snoRNA chromosome:GRCh37:X:113260261:113260330:1 gene:ENSG00000212611 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	113260261	113260330	+	ENSG00000212611	ENST00000391309	NA	NA	NA	NA	NA	inter
CUST_43467_PI429285431	1.6406924	A	0.9207285	A	1.64714081825187	0	lncRNA	48270-2_{3001..3816}	"gi|308153258|ref|NR_036662.1| Homo sapiens oxysterol binding protein-like 9 (OSBPL9), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|308153258|ref|NR_036662.1| Homo sapiens oxysterol binding protein-like 9 (OSBPL9), transcript variant 8, non-coding RNA"	Chr1	 52085546	 52086361	+	114883	NR_036662.1	NA	NA	NA	NA	NA	inter
CUST_31411_PI429285431	0.9028938	A	1.565573	A	0.631704082047068	0	lncRNA	33183-1_{1..363}	n337875|AF086457|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|258|NULL|-0.7445630|-0.4846916	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337875|AF086457|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|258|NULL|-0.7445630|-0.4846916	chrX	140267419	140267781	-	NA	NA	NA	NA	LDOC1	NA	chrX:140269930-140271310	inter
CUST_30992_PI429285431	0.9041146	A	0.8978448	A	1.00435535128572	0	lncRNA	32780-1_{1..640}	n337155|AF399570|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383984|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383984|4.4023800|-0.3686833	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337155|AF399570|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000383984|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000383984|4.4023800|-0.3686833	chr14	 20404027	 20404666	+	NA	NA	NA	NA	OR4K1	NA	chr14:20403767-20404842	inner
LNCA_21_P0009449	3.0760393	P	2.409496	A	1.58726531711212	0	lncRNA	TCONS_00026271	NA	NA	NA	NA	XLOC_012618	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012618), lincRNA [TCONS_00026271]"	chr18:5890089-5890148	hs|18p11.31	Agilent_HUMAN_G3V2	TCONS_00026271	TCONS_00026271	chr18	  5890089	  5890148	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3352048	5.442335	P	5.8692183	P	0.743867050394661	0	lncRNA	ENST00000379317	XR_132470	XR_132470	NA	Hs.672618	NA	NA	ENST00000379317	THC2628413	NA	"PREDICTED: Homo sapiens hypothetical LOC100506376 (LOC100506376), miscRNA [XR_132470]"	chr1:1111080-1111021	hs|1p36.33	Agilent_HUMAN_G3V2	ENST00000379317	ENST00000379317	chr1	  1111021	  1111080	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007033	0.8999891	A	0.88716054	A	1.00893173218215	0	lncRNA	TCONS_00018641	NA	NA	NA	NA	XLOC_008992	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008992), lincRNA [TCONS_00018641]"	chr10:130833717-130833658	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_00018641	TCONS_00018641	chr10	130833658	130833717	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12478_PI429285431	1.6589428	A	0.8982662	A	1.69428502995311	0	lncRNA	14090-1_{1..867}	lnc-FAM113B-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-FAM113B-4:2	chr12	 47813705	 47814571	+	lnc-FAM113B-4	lnc-FAM113B-4:2	XLOC_009728	linc-SLC48A1-3	NA	NA	NA	inter
LNCA_21_P0013544	0.97666144	A	2.0952	A	0.460560133287466	0	lncRNA	TCONS_l2_00028589	NA	NA	NA	NA	XLOC_l2_014686	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014686), lincRNA [TCONS_l2_00028589]"	chr9:72641-72700	hs|9p24.3	Agilent_HUMAN_G3V2	TCONS_l2_00028589	TCONS_l2_00028589	chr9	    72641	    72700	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22349_PI429285431	2.6993442	A	1.9112546	A	1.72678635759038	0	lncRNA	23943-1_{1..481}	lnc-TBCK-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TBCK-3:3	chr4	106748270	106748750	-	lnc-TBCK-3	lnc-TBCK-3:3	ENSG00000251175.1	RP11-45L9.1	GSTCD	NA	chr4:106738270-106758313	inner
CUST_11771_PI429285431	0.9769652	A	1.0227365	A	0.96877174942663	0	lncRNA	13349-2_{3001..3807}	lnc-AF127577.1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AF127577.1-5:1	chr21	 16217102	 16217908	+	lnc-AF127577.1-5	lnc-AF127577.1-5:1	XLOC_013863	linc-USP25-3	NA	NA	NA	inter
CUST_42224_PI429285431	0.9230814	A	0.9344881	A	0.992124652385856	0	lncRNA	44331-1_{1..75}	ENST00000583630 ncrna:miRNA chromosome:GRCh37:8:47996975:47997049:1 gene:ENSG00000264231 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000583630 ncrna:miRNA chromosome:GRCh37:8:47996975:47997049:1 gene:ENSG00000264231 gene_biotype:miRNA transcript_biotype:miRNA	chr8	 47996975	 47997049	+	ENSG00000264231	ENST00000583630	NA	NA	NA	NA	NA	inter
LNCA_21_P0008619	0.94886273	A	1.0017896	A	0.963978670439614	0	lncRNA	AL137606	NA	AL137606	NA	Hs.636453	XLOC_011218	NA	NA	THC2535983	NA	"BROAD Institute lincRNA (XLOC_011218), lincRNA [TCONS_00023364]"	chr15:40217932-40217991	hs|15q15.1	Agilent_HUMAN_G3V2	AL137606	AL137606	chr15	 40217932	 40217991	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013028	0.9340734	A	1.9018351	A	0.511298713104148	0	lncRNA	TCONS_l2_00024286	NA	NA	NA	NA	XLOC_l2_012605	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012605), lincRNA [TCONS_l2_00024286]"	chr6:74848079-75056843	hs|6q13	Agilent_HUMAN_G3V2	TCONS_l2_00024286	TCONS_l2_00024286	chr6	 74848079	 75056843	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007193	2.5827672	A	2.92586	A	0.788349462588476	0	lncRNA	ENST00000530102	NA	NA	NA	NA	XLOC_009109	NA	ENST00000530102	NA	NA	"BROAD Institute lincRNA (XLOC_009109), lincRNA [TCONS_00019276]"	chr11:38688264-38688323	hs|11p12	Agilent_HUMAN_G3V2	ENST00000530102	ENST00000530102	chr11	 38688264	 38688323	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33343_PI429285431	10.996112	P	9.07048	P	3.79903235770439	0	lncRNA	34925-1_{1..2722}	n340062|AL049370|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2517|NULL|-1.0581400|-0.1671391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340062|AL049370|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2517|NULL|-1.0581400|-0.1671391	chr10	 73059930	 73062651	+	NA	NA	NA	NA	UNC5B	NA	chr10:73049930-73060749	inner
LNCA_21_P0006381	3.5900958	P	3.262466	P	1.25494992593885	0	lncRNA	XR_108963	XR_108963	XR_108963	NA	NA	LOC100506414	uncharacterized LOC100506414	ENST00000413352	THC2660774	NA	"PREDICTED: Homo sapiens hypothetical LOC100506414 (LOC100506414), miscRNA [XR_108963]"	chr9:82132873-82132814	hs|9q21.31	Agilent_HUMAN_G3V2	XR_108963	XR_108963	chr9	 82132814	 82132873	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38238_PI429285431	3.4235206	P	3.4176586	P	1.00407149487837	0	lncRNA	39299-1_{1..854}	n381728|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001omm.1||1.9532900|-0.1710851	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381728|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001omm.1||1.9532900|-0.1710851	chr11	 67380123	 67380976	-	NA	NA	NA	NA	NDUFV1	NA	chr11:67374323-67380012	inter
LNCA_21_P0008252	11.958442	P	12.034486	P	0.948655382155898	0	lncRNA	TCONS_00022267	NA	NA	NA	NA	XLOC_010588	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010588), lincRNA [TCONS_00022267]"	chr13:44974260-44974201	hs|13q14.11	Agilent_HUMAN_G3V2	TCONS_00022267	TCONS_00022267	chr13	 44974201	 44974260	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005939	0.9046594	A	0.9111486	A	0.995512130036125	0	lncRNA	THC2750669	NA	NA	NA	NA	XLOC_006827	NA	NA	THC2750669	NA	"BROAD Institute lincRNA (XLOC_006827), lincRNA [TCONS_00015291]"	chr8:067109778-067109837	hs|8q13.1	Agilent_HUMAN_G3V2	THC2750669	THC2750669	chr8	 67109778	 67109837	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005810	0.90272665	A	0.9082672	A	0.996166948357423	0	lncRNA	TCONS_00014956	NA	NA	NA	NA	XLOC_007035	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007035), lincRNA [TCONS_00014956]"	chr8:29139728-29139669	hs|8p12	Agilent_HUMAN_G3V2	TCONS_00014956	TCONS_00014956	chr8	 29139669	 29139728	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00321187	0.90009105	A	1.0395004	A	0.907890776425855	0	lncRNA	ENST00000556890	XR_110268	XR_110268	NA	Hs.652058	LOC728755	NA	ENST00000556890	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC728755 (LOC728755), miscRNA [XR_110268]"	chr14:27791265-27791206	hs|14q12	Agilent_HUMAN_G3V2	ENST00000556890	ENST00000556890	chr14	 27791206	 27791265	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00803494	3.397445	P	3.1137805	P	1.21728290553539	0	lncRNA	TCONS_00028716	NA	NA	NA	NA	XLOC_013825	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013825), lincRNA [TCONS_00028716]"	chr20:58660668-58660609	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028716	TCONS_00028716	chr20	 58660609	 58660668	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28336_PI429285431	0.9048238	M	0.89296013	A	1.00825717336155	0	lncRNA	29981-1_{1..1236}	n325641|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045720|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045720|-1.2344600|-0.4532271	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325641|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000045720|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000045720|-1.2344600|-0.4532271	chr13	105157218	105158453	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_22007_PI429285431	6.5798736	P	6.6952815	P	0.923121275380132	0	lncRNA	23616-1_{1..603}	lnc-BAZ1A-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-BAZ1A-1:4	chr14	 35451636	 35452238	-	lnc-BAZ1A-1	lnc-BAZ1A-1:4	ENSG00000258704.1	RP11-85K15.2	SRP54	"hg19_refFlat_SUMO2:range=chr17:73164434-731789295'pad=0,hg19_refFlat_SUMO2:range=chr17:73164434-731789295'pad=0 3'pad=0 strand=- repeatMasking=none,-32.60chr14:35452104-35461658"	NA	inter
CUST_122_PI429201921	0.9114198	A	0.9154207	A	0.997230629247036	0	lncRNA	116-2_{3001..3424}	TC09002548.hg.1	TCONS_l2_00029317-XLOC_l2_015203 // Broad TUCP // linc-FAM75A7-19 chr9:-:66707911-66711336 // chr9 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr9:-:66707911-66711336	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00029317-XLOC_l2_015203	linc-FAM75A7-19	chr9	 66707911	 66711336	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3716_PI429285431	0.90466493	A	0.89162856	A	1.00907707211783	0	lncRNA	3684-1_{1..485}	"transcript_id ""ENST00000598092.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598092.1"" | genecode_v17"	chr10	 67375445	 67375929	+	ENSG00000228065.5	ENST00000598092.1	RP11-222A11.1	RP11-222A11.1-013	NA	NA	NA	inter
CUST_8990_PI429285431	0.96349204	A	0.90643835	A	1.04033898209183	0	lncRNA	10521-2_{3001..4991}	lnc-C6orf94-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C6orf94-1:1	chr6	144328474	144330464	+	lnc-C6orf94-1	lnc-C6orf94-1:1	ENSG00000246840	AL109755.1	PLAGL1	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80chr6:144315474-144339867"	NA	inner
CUST_18494_PI429285431	3.8962564	P	2.548882	A	2.54448625839335	0	lncRNA	20211-2_{3001..4605}	lnc-TRIM26-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TRIM26-2:8	chr6	 30296786	 30298390	-	lnc-TRIM26-2	lnc-TRIM26-2:8	ENSG00000231074	HCG18	TRIM39-RPP21	NA	chr6:30297088-30304111	inter
CUST_30003_PI429285431	4.9446125	P	5.3689528	P	0.74517940125149	0	lncRNA	31769-1_{1..281}	n334398|S81264|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000217021|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000217021|1.4832400|-0.1609024	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334398|S81264|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000217021|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000217021|1.4832400|-0.1609024	chr17	 59479133	 59479413	+	NA	NA	NA	NA	BCAS3	NA	chr17:59469133-59470199	inner
CUST_42156_PI429285431	0.9026753	A	0.8915027	A	1.00777432049995	0	lncRNA	44190-1_{1..81}	ENST00000580269 ncrna:miRNA chromosome:GRCh37:8:6602685:6602765:1 gene:ENSG00000266038 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580269 ncrna:miRNA chromosome:GRCh37:8:6602685:6602765:1 gene:ENSG00000266038 gene_biotype:miRNA transcript_biotype:miRNA	chr8	  6602685	  6602765	+	ENSG00000266038	ENST00000580269	NA	NA	AGPAT5	NA	chr8:6592685-6612765	inter
LNCA_21_P0009035	0.89528286	A	0.8816769	A	1.00947554419169	0	lncRNA	THC2691669	NA	NA	NA	NA	XLOC_011948	NA	NA	THC2691669	NA	"BROAD Institute lincRNA (XLOC_011948), lincRNA [TCONS_00024660]"	chr16:054881225-054881166	hs|16q12.2	Agilent_HUMAN_G3V2	THC2691669	THC2691669	chr16	 54881166	 54881225	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6151_PI429285431	0.926823	A	0.9185611	A	1.00574314165654	0	lncRNA	6077-1_{1..609}	"transcript_id ""ENST00000589074.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000589074.1"" | genecode_v17"	chr18	 33531766	 33532374	-	ENSG00000267627.1	ENST00000589074.1	RP11-905K4.1	RP11-905K4.1-001	C18orf21	NA	chr18:33552588-33556081	inter
LNCA_21_P0004359	1.3121626	A	2.3985596	A	0.470936027212399	0	lncRNA	TCONS_00010259	NA	NA	NA	NA	XLOC_004725	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004725), lincRNA [TCONS_00010259]"	chr5:6702853-6702794	hs|5p15.31	Agilent_HUMAN_G3V2	TCONS_00010259	TCONS_00010259	chr5	  6702794	  6702853	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001294	0.8982146	A	0.88185686	A	1.01140284375494	0	lncRNA	TCONS_00000934	NA	NA	NA	NA	XLOC_000185	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000185), lincRNA [TCONS_00000934]"	chr1:50772989-50773048	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_00000934	TCONS_00000934	chr1	 50772989	 50773048	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008376	3.497374	P	4.0682983	P	0.673185356583155	0	lncRNA	TCONS_00022597	NA	NA	NA	NA	XLOC_010903	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010903), lincRNA [TCONS_00022597]"	chr14:90959607-90959933	hs|14q32.11	Agilent_HUMAN_G3V2	TCONS_00022597	TCONS_00022597	chr14	 90959607	 90959933	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22503_PI429285431	1.9769325	A	2.1844325	A	0.866036658948632	0	lncRNA	24090-1_{1..268}	lnc-RPL21-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPL21-2:1	chr13	 27743074	 27743341	+	lnc-RPL21-2	lnc-RPL21-2:1	ENSG00000232162.1	USP12-AS1	USP12	NA	chr13:27733074-27746033	inner
CUST_21533_PI429285431	0.915608	A	0.9134486	A	1.00149790275901	0	lncRNA	23151-1_{1..2317}	lnc-OR4N4-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR4N4-1:9	chr15	 22382464	 22384780	+	lnc-OR4N4-1	lnc-OR4N4-1:9	ENSG00000259176.1	RP11-69H14.6	OR4N4	NA	chr15:22382473-22383815	inner
CUST_30906_PI429285431	5.207556	P	5.1830955	P	1.01709927375086	0	lncRNA	32694-1_{1..344}	n336939|BC096064|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000335352|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000335352|-1.0211300|-0.1324004	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336939|BC096064|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000335352|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000335352|-1.0211300|-0.1324004	chr16	 11643239	 11643582	+	NA	NA	NA	NA	LITAF	"hg19_refFlat_LITAF:range=chr16:11645579-116505865'pad=0,hg19_refFlat_LITAF:range=chr16:11645579-116505865'pad=0 3'pad=0 strand=- repeatMasking=none,-94.90;hg19_refFlat_LITAF:range=chr16:11643493-116505865'pad=0,hg19_refFlat_LITAF:range=chr16:11643493-116505865'pad=0 3'pad=0 strand=- repeatMasking=none,-94.90chr16:11641578-11681322"	NA	inter
LNCA_21_P0012024	1.1151379	A	0.93073267	A	1.13634840208521	0	lncRNA	XR_109894	XR_109894	XR_109894	NA	Hs.729303	LOC100507460	uncharacterized LOC100507460	NA	THC2508700	NA	"PREDICTED: Homo sapiens hypothetical LOC100507460 (LOC100507460), miscRNA [XR_109894]"	chr2:132457360-132457419	hs|2q21.1	Agilent_HUMAN_G3V2	XR_109894	XR_109894	chr2	132457360	132457419	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009652	2.9195883	A	2.964961	A	0.969039446866504	0	lncRNA	XR_109539	XR_109539	XR_109539	NA	Hs.646363	LOC100505639	uncharacterized LOC100505639	NA	THC2607109	NA	"PREDICTED: Homo sapiens hypothetical LOC100505639 (LOC100505639), miscRNA [XR_109539]"	chr19:42661301-42661360	hs|19q13.2	Agilent_HUMAN_G3V2	XR_109539	XR_109539	chr19	 42661301	 42661360	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51858_PI429285431	0.91626483	A	1.3282319	A	0.751597894311961	0	lncRNA	55410-4_{9001..9884}	hg19_lincRNAsTranscripts_TCONS_l2_00013179 range=chr19:50993628-51003656 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013179 range=chr19:50993628-51003656 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 51002628	 51003511	-	NA	NA	NA	NA	JOSD2	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10chr19:51009259-51013656"	NA	inter
CUST_26486_PI429285431	0.89770555	A	1.0349205	A	0.909272767352092	0	lncRNA	27995-1_{1..1210}	lnc-ANKRD65-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKRD65-2:1	chr1	  1365355	  1366564	-	lnc-ANKRD65-2	lnc-ANKRD65-2:1	ENSG00000236239.1	RP4-758J18.9	VWA1	"hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50chr1:1370903-1375635"	NA	inter
LNCA_21_P0003751	1.9708623	A	0.9034294	A	2.09570100306129	0	lncRNA	TCONS_00008530	NA	NA	NA	NA	XLOC_004017	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004017), lincRNA [TCONS_00008530]"	chr4:90507161-90507102	hs|4q22.1	Agilent_HUMAN_G3V2	TCONS_00008530	TCONS_00008530	chr4	 90507102	 90507161	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003049	0.89954394	A	0.90255564	A	0.997914626056233	0	lncRNA	THC2767373	NA	NA	NA	NA	XLOC_002888	NA	NA	THC2767373	NA	"BROAD Institute lincRNA (XLOC_002888), lincRNA [TCONS_00007015]"	chr3:155576057-155576116	hs|3q25.31	Agilent_HUMAN_G3V2	THC2767373	THC2767373	chr3	155576057	155576116	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12390_PI429285431	0.9058994	A	0.9079117	A	0.998606152237957	0	lncRNA	14003-1_{1..840}	lnc-FOXG1-5:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXG1-5:3	chr14	 27289364	 27290203	+	lnc-FOXG1-5	lnc-FOXG1-5:3	XLOC_010778	linc-FOXG1-3	NA	NA	NA	inter
LNCA_21_P0004680	1.7716844	A	2.5741796	A	0.573356675670412	0	lncRNA	ENST00000415883	NA	NA	NA	NA	XLOC_005437	NA	ENST00000415883	NA	NA	"BROAD Institute lincRNA (XLOC_005437), lincRNA [TCONS_00011359]"	chr6:113864725-113864784	hs|6q21	Agilent_HUMAN_G3V2	ENST00000415883	ENST00000415883	chr6	113864725	113864784	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3337921	2.215239	A	1.8072753	A	1.32681175594462	0	lncRNA	XR_109991	XR_109991	XR_109991	   727944	NA	LOC727944	uncharacterized LOC727944	NA	THC2779523	NA	"PREDICTED: Homo sapiens hypothetical LOC727944, transcript variant 1 (LOC727944), miscRNA [XR_109991]"	chr2:490862-490803	hs|2p25.3	Agilent_HUMAN_G3V2	XR_109991	XR_109991	chr2	   490803	   490862	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00806962	1.9681517	A	2.981684	P	0.495331989110012	0	lncRNA	XR_109771	XR_109771	XR_109771	NA	NA	LOC100506774	uncharacterized LOC100506774	NA	THC2477614	NA	"PREDICTED: Homo sapiens hypothetical LOC100506774 (LOC100506774), miscRNA [XR_109771]"	chrX:73423278-73423219	hs|Xq13.2	Agilent_HUMAN_G3V2	XR_109771	XR_109771	chrX	 73423219	 73423278	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010666	0.89552283	A	0.8817372	A	1.00960126983724	0	lncRNA	TCONS_l2_00001700	NA	NA	NA	NA	XLOC_l2_001255	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001255), lincRNA [TCONS_l2_00001700]"	chr1:199928443-199928384	hs|1q32.1	Agilent_HUMAN_G3V2	TCONS_l2_00001700	TCONS_l2_00001700	chr1	199928384	199928443	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11989_PI429285431	0.90033245	A	0.89414686	A	1.00429672885103	0	lncRNA	13569-1_{1..315}	lnc-BTF3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTF3-3:1	chr5	 72734202	 72734516	+	lnc-BTF3-3	lnc-BTF3-3:1	XLOC_004425	linc-BTF3-3	FOXD1	NA	chr5:72742083-72744352	inter
LNCA_21_P0011281	4.1507134	P	4.5318556	P	0.767829449605192	0	lncRNA	ENST00000429368	XR_111467	XR_111467	NA	Hs.301755	XLOC_l2_004306	NA	ENST00000429368	THC2501795	NA	"PREDICTED: Homo sapiens hypothetical LOC100507257 (LOC100507257), miscRNA [XR_111467]"	chr14:101539197-101539256	hs|14q32.31	Agilent_HUMAN_G3V2	ENST00000429368	ENST00000429368	chr14	101539197	101539256	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013072	4.7605896	P	4.825385	P	0.956080897377356	0	lncRNA	TCONS_l2_00024675	NA	NA	NA	NA	XLOC_l2_012925	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012925), lincRNA [TCONS_l2_00024675]"	chr6:27018431-26960361	hs|6p22.2	Agilent_HUMAN_G3V2	TCONS_l2_00024675	TCONS_l2_00024675	chr6	 26960361	 27018431	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3643_PI429285431	0.9120138	A	1.6235316	A	0.610677332314478	0	lncRNA	3612-1_{1..378}	"transcript_id ""ENST00000426067.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426067.1"" | genecode_v17"	chr10	 30865628	 30866005	+	ENSG00000230298.1	ENST00000426067.1	RP11-253D19.2	RP11-253D19.2-001	NA	NA	NA	inter
CUST_20057_PI429285431	1.2728595	A	1.0067719	A	1.20254226467856	0	lncRNA	21708-1_{1..735}	lnc-PDGFRL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PDGFRL-1:1	chr8	 17563157	 17563891	+	lnc-PDGFRL-1	lnc-PDGFRL-1:1	ENSG00000253168.1	RP11-326L2.1	MTUS1	NA	chr8:17553157-17573696	inner
CUST_37710_PI429285431	0.9192792	A	0.91678226	A	1.00173224552792	0	lncRNA	38804-2_{3001..4154}	n346206|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1756|NULL|-1.3553100|-0.3092514	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346206|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1756|NULL|-1.3553100|-0.3092514	chr4	 88846345	 88847498	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15006_PI429285431	1.5597789	A	0.8892768	A	1.59162680373084	0	lncRNA	16668-1_{1..713}	lnc-C9orf107-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf107-1:1	chr9	105053028	105053740	+	lnc-C9orf107-1	lnc-C9orf107-1:1	XLOC_007495	linc-CYLC2-1	NA	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
LNCA_33_P3352304	0.89075845	A	0.8862032	A	1.0031624487175	0	lncRNA	ENST00000513415	XR_113307	XR_113307	NA	Hs.381355	NA	NA	ENST00000513415	NP426877	NA	"PREDICTED: Homo sapiens XAGE-4 protein (XAGE-4), miscRNA [XR_113307]"	chrX:55682871-55682812	hs|Xp11.21	Agilent_HUMAN_G3V2	ENST00000513415	ENST00000513415	chrX	 55682812	 55682871	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_232_PI429201921	3.1753545	A	3.5358927	P	0.778873965112274	0	lncRNA	180-1_{1..3000}	TC0X001725.hg.1	TCONS_l2_00030697-XLOC_l2_015535 // Broad TUCP // linc-FAAH2-5 chrX:+:56644823-56650891 // chrX // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrX:+:56644823-56650891	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00030697-XLOC_l2_015535	linc-FAAH2-5	chrX	 56644823	 56650891	+	NA	NA	NA	NA	WASF2	NA	chr1:27773709-27796093	Unknown
CUST_42790_PI429285431	0.9252795	A	0.91740215	A	1.00547509680052	0	lncRNA	45781-1_{1..137}	ENST00000384053 ncrna:snoRNA chromosome:GRCh37:4:17322369:17322505:-1 gene:ENSG00000206780 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384053 ncrna:snoRNA chromosome:GRCh37:4:17322369:17322505:-1 gene:ENSG00000206780 gene_biotype:snoRNA transcript_biotype:snoRNA	chr4	 17322369	 17322505	-	ENSG00000206780	ENST00000384053	NA	NA	NA	NA	NA	inter
CUST_12793_PI429285431	0.92204773	A	1.4870195	A	0.67596864343144	0	lncRNA	14420-1_{1..303}	lnc-GNA13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNA13-1:1	chr17	 63087644	 63087946	-	lnc-GNA13-1	lnc-GNA13-1:1	XLOC_012551	linc-GNA13	NA	NA	NA	inter
LNCA_21_P0013289	0.92376333	A	1.5113618	A	0.66544970232281	0	lncRNA	THC2668011	NA	NA	NA	NA	XLOC_l2_013751	NA	NA	THC2668011	NA	"BROAD Institute lincRNA (XLOC_l2_013751), lincRNA [TCONS_l2_00026433]"	chr7:025695018-025694959	hs|7p15.2	Agilent_HUMAN_G3V2	THC2668011	THC2668011	chr7	 25694959	 25695018	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15229_PI429285431	0.9210951	A	0.9405274	A	0.986620863086867	0	lncRNA	16899-1_{1..418}	lnc-CHCHD7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHCHD7-2:1	chr8	 57965315	 57965732	+	lnc-CHCHD7-2	lnc-CHCHD7-2:1	XLOC_006804	linc-FAM110B-6	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.46;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-34.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20"	NA	inter
CUST_5548_PI429285431	0.9275077	A	1.0379218	A	0.926322139402478	0	lncRNA	5478-1_{1..557}	"transcript_id ""ENST00000565153.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000565153.1"" | genecode_v17"	chr16	 52641261	 52641817	+	ENSG00000260963.1	ENST00000565153.1	RP11-297L17.2	RP11-297L17.2-001	NA	NA	NA	inter
CUST_12252_PI429285431	1.3274486	A	1.6843828	A	0.780822104376598	0	lncRNA	13858-1_{1..420}	lnc-C1orf201-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf201-3:4	chr1	 24865194	 24865613	-	lnc-C1orf201-3	lnc-C1orf201-3:4	XLOC_000744	linc-C1orf201-2	RCAN3	NA	chr1:24855194-24862428	inter
CUST_6012_PI429285431	1.2845683	A	1.5101825	A	0.855230849884142	0	lncRNA	5937-1_{1..702}	"transcript_id ""ENST00000596728.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596728.1"" | genecode_v17"	chr17	 79352934	 79353635	-	ENSG00000262223.2	ENST00000596728.1	RP11-1055B8.3	RP11-1055B8.3-201	LOC100130370	NA	chr17:79352934-79357447	inter
CUST_21190_PI429285431	1.7553763	A	2.0980315	A	0.788588621967607	0	lncRNA	22815-1_{1..624}	lnc-KRT83-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KRT83-1:1	chr12	 52701995	 52702618	-	lnc-KRT83-1	lnc-KRT83-1:1	ENSG00000257829.1	RP11-845M18.6	KRT83	NA	chr12:52708085-52712155	inner
CUST_40715_PI429285431	7.427208	P	7.6576796	P	0.852356221023675	0	lncRNA	41453-1_{1..3000}	n410284|NR_037177_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_5||1.0398400|-0.3462925	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n410284|NR_037177_5|lncRNA|Homosapiens||RefGeneNoncode|NR_037177_5||1.0398400|-0.3462925	chr6	  4198786	  4201785	+	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0,hg19_refFlat_LOC100506422:range=chr9:26094593-261168535'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.60;hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0,hg19_refFlat_ASMT:range=chrX:1734093-17619075'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20;hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0,hg19_refFlat_ASMT:range=chrY:1684093-17119075'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.20"	NA	inter
LNCA_21_P0007524	6.7759295	P	7.318471	P	0.686560375326773	0	lncRNA	TCONS_00020330	NA	NA	NA	NA	XLOC_009659	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009659), lincRNA [TCONS_00020330]"	chr12:10412870-10412929	hs|12p13.2	Agilent_HUMAN_G3V2	TCONS_00020330	TCONS_00020330	chr12	 10412870	 10412929	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006897	0.89435244	A	0.8890899	A	1.00365437577177	0	lncRNA	TCONS_00018288	NA	NA	NA	NA	XLOC_008567	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008567), lincRNA [TCONS_00018288]"	chr10:95753056-95753115	hs|10q23.33	Agilent_HUMAN_G3V2	TCONS_00018288	TCONS_00018288	chr10	 95753056	 95753115	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48476_PI429285431	9.271385	P	9.348148	P	0.948182715887002	0	lncRNA	52328-1_{1..1613}	hg19_lincRNAsTranscripts_TCONS_l2_00000849 range=chr1:224180462-224196185 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000849 range=chr1:224180462-224196185 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	224180462	224182074	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005730	1.7007378	A	2.3073308	A	0.656745811734117	0	lncRNA	TCONS_00014782	NA	NA	NA	NA	XLOC_006859	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006859), lincRNA [TCONS_00014782]"	chr8:82273162-82306229	hs|8q21.13	Agilent_HUMAN_G3V2	TCONS_00014782	TCONS_00014782	chr8	 82273162	 82306229	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008812	0.89663404	A	0.8816141	A	1.01046541239121	0	lncRNA	TCONS_00023866	NA	NA	NA	NA	XLOC_011176	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011176), lincRNA [TCONS_00023866]"	chr15:24571648-24571707	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023866	TCONS_00023866	chr15	 24571648	 24571707	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33539_PI429285431	0.90784234	A	0.8999124	A	1.00551174966036	0	lncRNA	35107-1_{1..600}	n340285|AF088005|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2746|NULL|-1.2068200|-0.2891711	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n340285|AF088005|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2746|NULL|-1.2068200|-0.2891711	chr4	181985241	181985840	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30313_PI429285431	2.268671	A	2.271123	A	0.998301846610152	0	lncRNA	32089-1_{1..298}	n335221|AY539981|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255276|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255276|0.9593370|-0.2067095	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335221|AY539981|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000255276|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000255276|0.9593370|-0.2067095	chrX	 10450501	 10450798	-	NA	NA	NA	NA	MID1	NA	chrX:10440501-10473755	inner
LNCA_21_P0008467	0.89738584	A	0.88167375	A	1.01095031142626	0	lncRNA	TCONS_00022817	NA	NA	NA	NA	XLOC_011089	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011089), lincRNA [TCONS_00022817]"	chr14:82284482-82282674	hs|14q31.1	Agilent_HUMAN_G3V2	TCONS_00022817	TCONS_00022817	chr14	 82282674	 82284482	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49255_PI429285431	0.907907	A	1.1959639	A	0.819004395628391	0	lncRNA	53074-1_{1..1438}	hg19_lincRNAsTranscripts_TCONS_l2_00023776 range=chr5:70504436-70519875 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023776 range=chr5:70504436-70519875 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 70504436	 70505873	-	NA	NA	NA	NA	LOC100652870	"hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-65.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00chr5:70519357-70519728"	NA	inter
LNCA_21_P0005434	0.9006751	A	0.8836415	A	1.01187676710465	0	lncRNA	XR_132534	XR_132534	XR_132534	NA	Hs.671875	FLJ40288	uncharacterized FLJ40288	ENST00000332558	THC2655312	NA	"PREDICTED: Homo sapiens hypothetical FLJ40288 (FLJ40288), miscRNA [XR_132534]"	chr7:132346768-132346827	hs|7q32.3	Agilent_HUMAN_G3V2	XR_132534	XR_132534	chr7	132346768	132346827	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002253	0.9016686	A	1.4300202	A	0.693346488120372	0	lncRNA	BC036617	NA	BC036617	NA	Hs.625888	XLOC_001558	NA	NA	THC2497748	NA	"BROAD Institute lincRNA (XLOC_001558), lincRNA [TCONS_00004837]"	chr2:86116864-86116923	hs|2p11.2	Agilent_HUMAN_G3V2	BC036617	BC036617	chr2	 86116864	 86116923	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3217357	2.8824496	A	3.084468	P	0.86933347262008	0	lncRNA	XR_110140	XR_110140	XR_110140	100132501	Hs.634003	LOC100132501	uncharacterized LOC100132501	NA	THC2627840	NA	"PREDICTED: Homo sapiens hypothetical LOC100132501 (LOC100132501), miscRNA [XR_110140]"	chr18:53448336-53448277	hs|18q21.2	Agilent_HUMAN_G3V2	XR_110140	XR_110140	chr18	 53448277	 53448336	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42935_PI429285431	0.90308684	A	0.8912744	A	1.00822137085552	0	lncRNA	46051-1_{1..124}	ENST00000362604 ncrna:snoRNA chromosome:GRCh37:16:12936344:12936467:-1 gene:ENSG00000199474 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362604 ncrna:snoRNA chromosome:GRCh37:16:12936344:12936467:-1 gene:ENSG00000199474 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 12936344	 12936467	-	ENSG00000199474	ENST00000362604	NA	NA	NA	NA	NA	inter
LNCA_21_P0006438	6.5684524	P	7.3115354	P	0.597461228768625	0	lncRNA	ENST00000434938	NA	NA	NA	NA	XLOC_008099	NA	ENST00000434938	NA	NA	"BROAD Institute lincRNA (XLOC_008099), lincRNA [TCONS_00017028]"	chrY:1465379-1465320	hs|Yp11.32	Agilent_HUMAN_G3V2	ENST00000434938	ENST00000434938	chrY	  1465320	  1465379	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33597_PI429285431	0.99208766	A	0.898216	A	1.06723039459218	0	lncRNA	35162-1_{1..265}	n340353|AF009289|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2814|NULL|-1.1738300|-0.3824486	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340353|AF009289|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2814|NULL|-1.1738300|-0.3824486	chr5	  9285163	  9285427	-	NA	NA	NA	NA	SEMA5A	NA	chr5:9275163-9295428	inner
LNCA_21_P0011803	2.2411652	A	0.90962785	A	2.51670714850659	0	lncRNA	TCONS_l2_00013631	NA	NA	NA	NA	XLOC_l2_007315	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007315), lincRNA [TCONS_l2_00013631]"	chr2:52215606-52331319	hs|2p16.3	Agilent_HUMAN_G3V2	TCONS_l2_00013631	TCONS_l2_00013631	chr2	 52215606	 52331319	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33213_PI429285431	1.0971416	A	1.6418033	A	0.685552139924004	0	lncRNA	34804-1_{1..2097}	n339911|AK026731|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2360|NULL|-1.3313000|-0.4897784	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339911|AK026731|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2360|NULL|-1.3313000|-0.4897784	chr18	 66879513	 66881609	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008441	0.92668027	A	1.8000798	A	0.545859085494483	0	lncRNA	TCONS_00022750	NA	NA	NA	NA	XLOC_011030	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011030), lincRNA [TCONS_00022750]"	chr14:54854765-54854706	hs|14q22.2	Agilent_HUMAN_G3V2	TCONS_00022750	TCONS_00022750	chr14	 54854706	 54854765	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008898	0.9235154	A	0.96522945	A	0.97150003304791	0	lncRNA	CR627169	NA	CR627169	NA	Hs.537253	XLOC_012041	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012041), lincRNA [TCONS_00024306]"	chr16:86115979-86115920	hs|16q24.1	Agilent_HUMAN_G3V2	CR627169	CR627169	chr16	 86115920	 86115979	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010431	0.9207285	A	0.946512	A	0.982286992441376	0	lncRNA	THC2687092	NA	NA	NA	NA	XLOC_014288	NA	NA	THC2687092	NA	"BROAD Institute lincRNA (XLOC_014288), lincRNA [TCONS_00029634]"	chr22:051028368-051028427	hs|22q13.33	Agilent_HUMAN_G3V2	THC2687092	THC2687092	chr22	 51028368	 51028427	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34270_PI429285431	2.491526	A	2.4131043	A	1.05586230126222	0	lncRNA	35771-1_{1..1235}	n341128|AK056988|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3594|NULL|-1.1041800|-0.0947224	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341128|AK056988|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3594|NULL|-1.1041800|-0.0947224	chr11	113931026	113932260	-	NA	NA	NA	NA	ZBTB16	NA	chr11:113930431-113942261	inner
LNCA_21_P0010335	0.9185501	A	0.93092763	A	0.991457248433695	0	lncRNA	ENST00000445088	XR_109711	XR_109711	NA	Hs.220558	XLOC_014368	NA	ENST00000445088	THC2480781	NA	"PREDICTED: Homo sapiens hypothetical LOC100506271 (LOC100506271), miscRNA [XR_109711]"	chr22:37748293-37748234	hs|22q13.1	Agilent_HUMAN_G3V2	ENST00000445088	ENST00000445088	chr22	 37748234	 37748293	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31811_PI429285431	6.6656036	P	6.9907765	P	0.798202719901468	0	lncRNA	33548-1_{1..629}	n338354|AF085892|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|748|NULL|1.0672500|-0.2325174	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338354|AF085892|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|748|NULL|1.0672500|-0.2325174	chr1	168433351	168433979	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_14651_PI429285431	2.4883258	A	2.50818	A	0.98633237905409	0	lncRNA	16320-1_{1..1668}	lnc-ATIC-7:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ATIC-7:3	chr2	216577961	216579628	+	lnc-ATIC-7	lnc-ATIC-7:3	XLOC_001849	linc-TMEM169-4	NA	NA	NA	inter
CUST_3723_PI429285431	0.90885127	A	1.4943236	A	0.666431117137692	0	lncRNA	3692-1_{1..465}	"transcript_id ""ENST00000444086.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000444086.1"" | genecode_v17"	chr10	 69993008	 69993472	-	ENSG00000233590.1	ENST00000444086.1	RP11-153K11.3	RP11-153K11.3-001	ATOH7	NA	chr10:69990381-69991855	inter
CUST_51970_PI429285431	4.922654	P	5.1868405	P	0.832668123291479	0	lncRNA	55512-1_{1..1743}	hg19_lincRNAsTranscripts_TCONS_l2_00016262 range=chr20:42839627-42854996 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016262 range=chr20:42839627-42854996 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 42839627	 42841369	+	NA	NA	NA	NA	C20orf111	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-19.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30chr20:42829627-42839546"	NA	inter
CUST_15514_PI429285431	5.7492294	P	6.323846	P	0.671464671182983	0	lncRNA	17202-2_{3001..6000}	lnc-NAP1L2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NAP1L2-1:4	chrX	 73064217	 73067216	-	lnc-NAP1L2-1	lnc-NAP1L2-1:4	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-44.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_29814_PI429285431	1.3049358	A	0.90389204	A	1.32046289284731	0	lncRNA	31577-1_{1..685}	n333530|BC042803|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000097340|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000097340|-0.3571450|-0.2130493	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333530|BC042803|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000097340|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000097340|-0.3571450|-0.2130493	chr10	 61412514	 61413198	+	NA	NA	NA	NA	SLC16A9	"hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-21.10;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_SLC16A9:range=chr10:61412530-614440495'pad=0,hg19_refFlat_SLC16A9:range=chr10:61412530-614440495'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-47.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.41;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20chr10:61410522-61423199"	NA	inner
CUST_32141_PI429285431	2.8534882	A	1.6964531	A	2.22998669118088	0	lncRNA	33841-1_{1..2229}	n338708|AK090773|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1128|NULL|-1.0636600|-0.2781607	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338708|AK090773|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1128|NULL|-1.0636600|-0.2781607	chr2	 26417087	 26419315	+	NA	NA	NA	NA	FAM59B	"hg19_refFlat_HADHA:range=chr2:26414119-264674645'pad=0,hg19_refFlat_HADHA:range=chr2:26414119-264674645'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50chr2:26407087-26412532"	NA	inner
CUST_19020_PI429285431	0.91636354	A	0.89641446	A	1.01392369266655	0	lncRNA	20710-1_{1..913}	lnc-VTA1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-VTA1-1:1	chr6	142455667	142456579	+	lnc-VTA1-1	lnc-VTA1-1:1	ENSG00000203733	GJE1	NA	NA	NA	inter
LNCA_24_P179244	0.8996523	A	0.8827091	A	1.01181336438175	0	lncRNA	XR_109205	XR_109205	XR_109205	100128979	Hs.602995	LOC100128979	uncharacterized LOC100128979	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100128979 (LOC100128979), miscRNA [XR_109205]"	chr15:63338666-63338607	hs|15q22.2	Agilent_HUMAN_G3V2	XR_109205	XR_109205	chr15	 63338607	 63338666	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43371_PI429285431	7.8653326	P	7.9398103	P	0.949685874232723	0	lncRNA	48187-1_{1..658}	"gi|211938447|ref|NR_024371.1| Homo sapiens uncharacterized LOC440556 (FLJ42875), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|211938447|ref|NR_024371.1| Homo sapiens uncharacterized LOC440556 (FLJ42875), transcript variant 2, non-coding RNA"	Chr1	  2980636	  2981293	-	440556	NR_024371.1	NA	NA	NA	NA	NA	inter
CUST_29923_PI429285431	0.9122002	A	0.919719	A	0.994801921986985	0	lncRNA	31687-1_{1..323}	n334071|M33031|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195490|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195490|0.9718550|-0.0502570	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334071|M33031|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000195490|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195490|0.9718550|-0.0502570	chr11	 46740759	 46741081	+	NA	NA	NA	NA	F2	NA	chr11:46740743-46752374	inner
LNCA_21_P0005089	3.524216	P	3.829161	P	0.809473075578088	0	lncRNA	TCONS_00012365	NA	NA	NA	NA	XLOC_005930	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005930), lincRNA [TCONS_00012365]"	chr6:169252813-169252754	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012365	TCONS_00012365	chr6	169252754	169252813	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010615	0.9020253	A	0.88660026	A	1.01074918477717	0	lncRNA	TCONS_l2_00001233	NA	NA	NA	NA	XLOC_l2_000911	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000911), lincRNA [TCONS_l2_00001233]"	chr1:52035371-52035312	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_l2_00001233	TCONS_l2_00001233	chr1	 52035312	 52035371	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12711_PI429285431	0.90206397	A	0.8864989	A	1.01084729426903	0	lncRNA	14329-1_{1..1295}	lnc-PXN-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PXN-1:1	chr12	120720081	120721375	-	lnc-PXN-1	lnc-PXN-1:1	XLOC_010219	linc-PXN	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_NME2:range=chr17:49244192-492489655'pad=0,hg19_refFlat_NME2:range=chr17:49244192-492489655'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NME2:range=chr17:49244192-492488685'pad=0,hg19_refFlat_NME2:range=chr17:49244192-492488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_NME1-NME2:range=chr17:49233016-492489655'pad=0,hg19_refFlat_NME1-NME2:range=chr17:49233016-492489655'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60"	NA	inter
LNCA_21_P0001595	8.162623	P	8.115378	P	1.0332898471617	0	lncRNA	TCONS_00001710	NA	NA	NA	NA	XLOC_001075	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001075), lincRNA [TCONS_00001710]"	chr1:164881682-164881623	hs|1q23.3	Agilent_HUMAN_G3V2	TCONS_00001710	TCONS_00001710	chr1	164881623	164881682	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006990	5.316557	P	5.20171	P	1.08286020046757	0	lncRNA	TCONS_00018496	NA	NA	NA	NA	XLOC_008802	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008802), lincRNA [TCONS_00018496]"	chr10:45571463-45571404	hs|10q11.21	Agilent_HUMAN_G3V2	TCONS_00018496	TCONS_00018496	chr10	 45571404	 45571463	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48960_PI429285431	4.5502024	P	3.7547152	P	1.73566341114722	0	lncRNA	52799-1_{1..2021}	hg19_lincRNAsTranscripts_TCONS_l2_00019041 range=chr3:185677774-185698761 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019041 range=chr3:185677774-185698761 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	185677774	185679794	+	NA	NA	NA	NA	NA	"hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20"	NA	inter
CUST_26413_PI429285431	3.1891885	A	1.7895106	A	2.63842669349764	0	lncRNA	27920-1_{1..813}	lnc-RP11-17M16.1.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-17M16.1.1-1:1	chr18	 74204713	 74205525	+	lnc-RP11-17M16.1.1-1	lnc-RP11-17M16.1.1-1:1	ENSG00000265778.1	RP11-17M16.2	ZNF516	NA	chr18:74194713-74207146	inner
CUST_48776_PI429285431	8.4523325	P	8.872294	P	0.747444570481546	0	lncRNA	52614-1_{1..302}	hg19_lincRNAsTranscripts_TCONS_l2_00015069 range=chr2:200773626-200775905 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00015069 range=chr2:200773626-200775905 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	200773626	200773927	-	NA	NA	NA	NA	C2orf69	NA	chr2:200775979-200785905	inter
CUST_9138_PI429285431	4.60933	P	4.7695274	P	0.894902615483567	0	lncRNA	10657-1_{1..3000}	lnc-SLC25A2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC25A2-1:1	chr5	140622639	140625638	-	lnc-SLC25A2-1	lnc-SLC25A2-1:1	ENSG00000251462	ENST00000503443	PCDHB1	"hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PCDHGA8:range=chr5:140772381-1407748435'pad=0,hg19_refFlat_PCDHGA8:range=chr5:140772381-1407748435'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-50.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_PCDHGA2:range=chr5:140718539-1408907405'pad=0,hg19_refFlat_PCDHGA2:range=chr5:140718539-1408907405'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_PCDHGA3:range=chr5:140723601-1407260905'pad=0,hg19_refFlat_PCDHGA3:range=chr5:140723601-1407260905'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-48.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PCDHGA3:range=chr5:140723601-1408907405'pad=0,hg19_refFlat_PCDHGA3:range=chr5:140723601-1408907405'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_PCDHGA6:range=chr5:140753651-1407561075'pad=0,hg19_refFlat_PCDHGA6:range=chr5:140753651-1407561075'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-45.90;hg19_refFlat_PCDHGA12:range=chr5:140810327-1408907405'pad=0,hg19_refFlat_PCDHGA12:range=chr5:140810327-1408907405'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_PCDHGA6:range=chr5:140753651-1408907405'pad=0,hg19_refFlat_PCDHGA6:range=chr5:140753651-1408907405'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_PCDHGA12:range=chr5:140810327-1408127895'pad=0,hg19_refFlat_PCDHGA12:range=chr5:140810327-1408127895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-37.83;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-53.20;hg19_refFlat_PCDHGA1:range=chr5:140710252-1407127235'pad=0,hg19_refFlat_PCDHGA1:range=chr5:140710252-1407127235'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_PCDHGA1:range=chr5:140710252-1408907405'pad=0,hg19_refFlat_PCDHGA1:range=chr5:140710252-1408907405'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_PCDHGA8:range=chr5:140772381-1408907405'pad=0,hg19_refFlat_PCDHGA8:range=chr5:140772381-1408907405'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_PCDHGA2:range=chr5:140718539-1407210105'pad=0,hg19_refFlat_PCDHGA2:range=chr5:140718539-1407210105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60chr5:140612639-140627802"	NA	inter
CUST_47095_PI429285431	7.429906	P	6.3656077	P	2.09115253454784	0	lncRNA	51177-2_{3001..4804}	"gi|365777419|ref|NR_045692.1| Homo sapiens chromosome 19 open reading frame 12 (C19orf12), transcript variant 7, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|365777419|ref|NR_045692.1| Homo sapiens chromosome 19 open reading frame 12 (C19orf12), transcript variant 7, non-coding RNA"	Chr19	 30192793	 30194596	-	83636	NR_045692.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70"	NA	inter
CUST_17590_PI429285431	1.7367797	A	5.602411	P	0.0686007757037577	0	lncRNA	19316-1_{1..630}	lnc-NOC2L-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NOC2L-1:3	chr1	   853402	   854031	-	lnc-NOC2L-1	lnc-NOC2L-1:3	XLOC_000670	linc-OR4F16-2	SAMD11	NA	chr1:861121-863914	inter
LNCA_21_P0011069	5.166971	P	5.4001646	P	0.850749556960566	0	lncRNA	XR_109143	XR_109143	XR_109143	NA	NA	LOC100506691	uncharacterized LOC100506691	NA	THC2611586	NA	"PREDICTED: Homo sapiens hypothetical LOC100506691 (LOC100506691), miscRNA [XR_109143]"	chr12:122506218-122506277	hs|12q24.31	Agilent_HUMAN_G3V2	XR_109143	XR_109143	chr12	122506218	122506277	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27703_PI429285431	0.91813284	A	0.92716104	A	0.993761668321329	0	lncRNA	29282-1_{1..542}	n324914|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000276288|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000276288|-0.7943220|-0.1492201	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324914|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000276288|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000276288|-0.7943220|-0.1492201	chr20	 61268593	 61269134	-	NA	NA	NA	NA	SLCO4A1	NA	chr20:61273797-61292700	inner
LNCA_21_P0003950	0.9160231	A	0.9275297	A	0.992055954692667	0	lncRNA	ENST00000505396	NA	NA	NA	NA	XLOC_004259	NA	ENST00000505396	THC2716180	NA	"BROAD Institute lincRNA (XLOC_004259), lincRNA [TCONS_00009330]"	chr5:3181287-3181346	hs|5p15.33	Agilent_HUMAN_G3V2	ENST00000505396	ENST00000505396	chr5	  3181287	  3181346	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43434_PI429285431	3.2368555	A	1.8192513	A	2.67141515975467	0	lncRNA	48242-1_{1..1138}	"gi|300069050|ref|NR_033967.1| Homo sapiens SLC2A1 antisense RNA 1 (SLC2A1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|300069050|ref|NR_033967.1| Homo sapiens SLC2A1 antisense RNA 1 (SLC2A1-AS1), non-coding RNA"	Chr1	 43424720	 43425857	+	440584	NR_033967.1	NA	NA	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70"	NA	inter
CUST_43477_PI429285431	8.8232765	P	8.586992	P	1.17795505986937	0	lncRNA	48276-2_{3001..6000}	"gi|313851016|ref|NR_037639.1| Homo sapiens HEATR8-TTC4 readthrough (HEATR8-TTC4), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|313851016|ref|NR_037639.1| Homo sapiens HEATR8-TTC4 readthrough (HEATR8-TTC4), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NR_037639.1	NA	NA	NA	"hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0,hg19_refFlat_GP6:range=chr19:55525450-555496045'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10"	NA	Unknown
LNCA_33_P3364062	3.267583	P	3.3550768	P	0.941156274127248	0	lncRNA	XR_109966	XR_109966	XR_109966	   403150	Hs.562970	FLJ31356	uncharacterized protein FLJ31356	NA	THC2515643	NA	"PREDICTED: Homo sapiens hypothetical protein FLJ31356 (FLJ31356), miscRNA [XR_109966]"	chr2:28609842-28609783	hs|2p23.2	Agilent_HUMAN_G3V2	XR_109966	XR_109966	chr2	 28609783	 28609842	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007979	0.898438	A	0.89981216	A	0.999047958349857	0	lncRNA	ENST00000432770	NA	NA	NA	NA	XLOC_010553	NA	ENST00000432770	NA	NA	"BROAD Institute lincRNA (XLOC_010553), lincRNA [TCONS_00021617]"	chr13:30681812-30681753	hs|13q12.3	Agilent_HUMAN_G3V2	ENST00000432770	ENST00000432770	chr13	 30681753	 30681812	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004176	4.037597	P	5.2279286	P	0.438202129372064	0	lncRNA	TCONS_00009771	NA	NA	NA	NA	XLOC_004979	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004979), lincRNA [TCONS_00009771]"	chr5:123676653-123676594	hs|5q23.2	Agilent_HUMAN_G3V2	TCONS_00009771	TCONS_00009771	chr5	123676594	123676653	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007821	1.3834262	A	0.89109635	A	1.40671478681786	0	lncRNA	THC2655203	NA	NA	NA	NA	XLOC_009661	NA	NA	THC2655203	NA	"BROAD Institute lincRNA (XLOC_009661), lincRNA [TCONS_00021063]"	chr12:010710713-010710772	hs|12p13.2	Agilent_HUMAN_G3V2	THC2655203	THC2655203	chr12	 10710713	 10710772	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012205	3.932663	P	4.507953	P	0.671151327901227	0	lncRNA	TCONS_l2_00017238	NA	NA	NA	NA	XLOC_l2_009219	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009219), lincRNA [TCONS_l2_00017238]"	chr21:40361412-40361353	hs|21q22.2	Agilent_HUMAN_G3V2	TCONS_l2_00017238	TCONS_l2_00017238	chr21	 40361353	 40361412	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5761_PI429285431	1.2967207	A	0.904857	A	1.31208728802905	0	lncRNA	5686-1_{1..1072}	"transcript_id ""ENST00000601694.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601694.1"" | genecode_v17"	chr17	 19351471	 19352542	-	ENSG00000235979.3	ENST00000601694.1	AC004448.5	AC004448.5-004	NA	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20"	NA	inter
CUST_37915_PI429285431	1.9347236	A	2.433865	A	0.70752773125642	0	lncRNA	39004-1_{1..1124}	n346455|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2005|NULL|-1.3742400|-0.1822766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346455|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2005|NULL|-1.3742400|-0.1822766	chr15	 76027178	 76028301	-	NA	NA	NA	NA	LOC100652820	NA	chr15:76030311-76031568	inter
LNCA_21_P0009995	4.1530027	P	4.367621	P	0.861774132822474	0	lncRNA	TCONS_00028276	NA	NA	NA	NA	XLOC_013621	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013621), lincRNA [TCONS_00028276]"	chr20:454127-454068	hs|20p13	Agilent_HUMAN_G3V2	TCONS_00028276	TCONS_00028276	chr20	   454068	   454127	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14798_PI429285431	0.9155846	A	1.035412	A	0.92029774588758	0	lncRNA	16459-1_{1..276}	lnc-CLEC18B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLEC18B-1:1	chr16	 74411642	 74411917	-	lnc-CLEC18B-1	lnc-CLEC18B-1:1	XLOC_012009	linc-ZFHX3-4	NPIPL2	NA	chr16:74411872-74421717	inter
CUST_7752_PI429285431	1.9890499	A	2.279408	A	0.817699067369904	0	lncRNA	9380-1_{1..3000}	lnc-COQ9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-COQ9-1:1	chr16	 57479995	 57482994	+	lnc-COQ9-1	lnc-COQ9-1:1	ENSG00000250743	ENST00000509888	CIAPIN1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.10;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.40;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.70chr16:57469995-57481369"	NA	inner
CUST_26419_PI429285431	5.2892437	P	5.358343	P	0.953232932469684	0	lncRNA	27926-1_{1..693}	lnc-PABPC4-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PABPC4-2:5	chr1	 40002863	 40003555	-	lnc-PABPC4-2	lnc-PABPC4-2:5	ENSG00000182109.3	RP11-69E11.4	BMP8A	"hg19_refFlat_BMP8B:range=chr1:40226091-402541575'pad=0,hg19_refFlat_BMP8B:range=chr1:40226091-402541575'pad=0 3'pad=0 strand=- repeatMasking=none,-100.30;hg19_refFlat_BMP8A:range=chr1:39957664-399914705'pad=0,hg19_refFlat_BMP8A:range=chr1:39957664-399914705'pad=0 3'pad=0 strand=+ repeatMasking=none,-101.70chr1:39992863-39995541"	NA	inter
LNCA_21_P0010837	1.7141665	A	0.8868688	A	1.77435871130096	0	lncRNA	TCONS_l2_00003148	NA	NA	NA	NA	XLOC_l2_001667	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001667), lincRNA [TCONS_l2_00003148]"	chr10:89367720-89367779	hs|10q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00003148	TCONS_l2_00003148	chr10	 89367720	 89367779	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49180_PI429285431	4.499246	P	4.9632688	P	0.724961959227185	0	lncRNA	53004-1_{1..2060}	hg19_lincRNAsTranscripts_TCONS_l2_00021324 range=chr4:142243699-142254187 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021324 range=chr4:142243699-142254187 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	142243699	142245758	-	NA	NA	NA	NA	NA	"hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40"	NA	inter
LNCA_21_P0008909	0.9562445	A	1.004664	A	0.966995110492631	0	lncRNA	TCONS_00024341	NA	NA	NA	NA	XLOC_011659	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011659), lincRNA [TCONS_00024341]"	chr16:19349045-19349104	hs|16p12.3	Agilent_HUMAN_G3V2	TCONS_00024341	TCONS_00024341	chr16	 19349045	 19349104	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003693	0.936632	A	0.9982432	A	0.958193412361426	0	lncRNA	TCONS_00008368	NA	NA	NA	NA	XLOC_003823	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003823), lincRNA [TCONS_00008368]"	chr4:187980755-187980814	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008368	TCONS_00008368	chr4	187980755	187980814	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7263_PI429285431	0.9267499	A	0.97869474	A	0.964635065734714	0	lncRNA	8048-1_{1..289}	"transcript_id ""ENST00000411080.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411080.1"" | genecode_v17"	chr9	 88873273	 88873561	-	ENSG00000223012.1	ENST00000411080.1	RN7SKP264	RN7SKP264-201	C9orf153	NA	chr9:88863273-88874519	inner
CUST_12635_PI429285431	0.9147943	A	0.92447686	A	0.993311032243295	0	lncRNA	14251-1_{1..239}	lnc-GDF10-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GDF10-3:1	chr10	 48593661	 48593899	-	lnc-GDF10-3	lnc-GDF10-3:1	XLOC_008812	linc-GDF10-3	NA	NA	NA	inter
LNCA_33_P3259938	5.1854615	P	5.7687616	P	0.667435301674764	0	lncRNA	XR_113275	XR_113275	XR_113275	100130547	Hs.495540	LOC100130547	uncharacterized LOC100130547	NA	THC2480486	NA	"PREDICTED: Homo sapiens hypothetical LOC100130547 (LOC100130547), miscRNA [XR_113275]"	chr9:140118626-140118567	hs|9q34.3	Agilent_HUMAN_G3V2	XR_113275	XR_113275	chr9	140118567	140118626	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8844_PI429285431	4.9902554	P	4.703928	P	1.21953181882035	0	lncRNA	10383-1_{1..2080}	lnc-RPRML-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RPRML-3:2	chr17	 45177201	 45179280	-	lnc-RPRML-3	lnc-RPRML-3:2	ENSG00000246634	AC068152.2	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50"	NA	inter
LNCA_21_P0009437	0.91349703	A	0.92368335	A	0.992964248620643	0	lncRNA	TCONS_00026229	NA	NA	NA	NA	XLOC_012605	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012605), lincRNA [TCONS_00026229]"	chr18:1050202-1050261	hs|18p11.32	Agilent_HUMAN_G3V2	TCONS_00026229	TCONS_00026229	chr18	  1050202	  1050261	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13385_PI429285431	1.9412702	A	2.4836755	A	0.686625194248699	0	lncRNA	15020-1_{1..501}	lnc-C2orf42-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C2orf42-2:4	chr2	 70322091	 70322591	-	lnc-C2orf42-2	lnc-C2orf42-2:4	XLOC_002151	linc-ASPRV1-2	PCBP1	NA	chr2:70314585-70316335	inter
CUST_30525_PI429285431	0.90670866	A	0.90897715	A	0.998428838121552	0	lncRNA	32305-1_{1..490}	n335683|CR616786|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000295981_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000295981_10|-1.1643500|-0.3340667	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335683|CR616786|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000295981_10|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000295981_10|-1.1643500|-0.3340667	chr6	  1948759	  1949248	-	NA	NA	NA	NA	GMDS	NA	chr6:1938759-1959249	inner
LNCA_21_P0014450	0.89768946	A	1.0983578	A	0.870147367194008	0	lncRNA	ENST00000438078	XR_113274	XR_113274	NA	Hs.730580	ESP33	NA	ENST00000438078	THC2653850	NA	"PREDICTED: Homo sapiens hypothetical locus ESP33 (ESP33), miscRNA [XR_113274]"	chr9:139142469-139142528	hs|9q34.3	Agilent_HUMAN_G3V2	ENST00000438078	ENST00000438078	chr9	139142469	139142528	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7061_PI429285431	0.91288877	A	0.9173274	A	0.996928104087212	0	lncRNA	7006-1_{1..489}	"transcript_id ""ENST00000605526.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000605526.1"" | genecode_v17"	chrX	 53123327	 53123815	+	ENSG00000232593.2	ENST00000605526.1	RP11-258C19.5	RP11-258C19.5-003	TSPYL2	NA	chrX:53113327-53117728	inter
CUST_33908_PI429285431	7.1148133	P	7.1995115	P	0.942981779360459	0	lncRNA	35450-1_{1..2015}	n340700|AK172852|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3163|NULL|-1.1326700|-0.2796555	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340700|AK172852|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3163|NULL|-1.1326700|-0.2796555	chr5	156790389	156792403	-	NA	NA	NA	NA	CYFIP2	NA	chr5:156780389-156802509	inner
CUST_19704_PI429285431	0.92299217	A	5.5198455	P	0.0413246574228709	0	lncRNA	21361-1_{1..726}	lnc-IL5RA-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL5RA-6:1	chr3	   238650	   239375	-	lnc-IL5RA-6	lnc-IL5RA-6:1	ENSG00000224318.1	CHL1-AS2	CHL1	NA	chr3:238650-249024	inner
LNCA_19_P00320047	5.1177444	P	6.2329063	P	0.461639347046257	0	lncRNA	THC2591825	NA	NA	NA	NA	XLOC_002997	NA	NA	THC2591825	NA	"BROAD Institute lincRNA (XLOC_002997), lincRNA [TCONS_00006381]"	chr3:195437351-195437410	hs|3q29	Agilent_HUMAN_G3V2	THC2591825	THC2591825	chr3	195437351	195437410	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012484	0.8980456	A	0.8820246	A	1.01116679937992	0	lncRNA	TCONS_l2_00019713	NA	NA	NA	NA	XLOC_l2_010511	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010511), lincRNA [TCONS_l2_00019713]"	chr3:197340105-197319981	hs|3q29	Agilent_HUMAN_G3V2	TCONS_l2_00019713	TCONS_l2_00019713	chr3	197319981	197340105	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_24_P765552	3.4939804	P	3.8172412	P	0.799261332595447	0	lncRNA	XR_110032	XR_110032	XR_110032	100128644	Hs.729644	LOC100128644	LMNE6487	NA	THC2484603	NA	"PREDICTED: Homo sapiens LMNE6487 (LOC100128644), miscRNA [XR_110032]"	chr3:12949305-12949246	hs|3p25.2	Agilent_HUMAN_G3V2	XR_110032	XR_110032	chr3	 12949246	 12949305	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22152_PI429285431	0.91050845	A	0.9026406	A	1.00546847587115	0	lncRNA	23753-1_{1..776}	lnc-SCN7A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SCN7A-1:1	chr2	167997312	167998087	-	lnc-SCN7A-1	lnc-SCN7A-1:1	ENSG00000254552.1	XIRP2-AS1	XIRP2	NA	chr2:167987312-168007465	inner
LNCA_21_P0014764	0.899101	A	0.8823469	A	1.01168075051474	0	lncRNA	ENST00000433518	XR_132531	XR_132531	NA	Hs.544905	TSRM	NA	ENST00000433518	NP1242608	NA	"PREDICTED: Homo sapiens zinc finger domain-related protein TSRM (TSRM), miscRNA [XR_132531]"	chr7:113091396-113091455	hs|7q31.1	Agilent_HUMAN_G3V2	ENST00000433518	ENST00000433518	chr7	113091396	113091455	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20391_PI429285431	5.0031896	P	3.370553	P	3.10079166957141	0	lncRNA	22032-2_{3001..4951}	lnc-PDK3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-PDK3-1:1	chrX	 24566633	 24568583	+	lnc-PDK3-1	lnc-PDK3-1:1	ENSG00000260822.1	GS1-358P8.4	PDK3	NA	chrX:24553633-24568583	inner
LNCA_21_P0007428	0.9023948	A	0.8857907	A	1.0115755694338	0	lncRNA	ENST00000530418	NA	NA	NA	NA	XLOC_009075	NA	ENST00000530418	NA	NA	"BROAD Institute lincRNA (XLOC_009075), lincRNA [TCONS_00019858]"	chr11:15948801-15948860	hs|11p15.2	Agilent_HUMAN_G3V2	ENST00000530418	ENST00000530418	chr11	 15948801	 15948860	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51416_PI429285431	1.2280993	A	1.1463131	A	1.05832754454329	0	lncRNA	54995-1_{1..1989}	hg19_lincRNAsTranscripts_TCONS_l2_00009940 range=chr16:2711207-2723395 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009940 range=chr16:2711207-2723395 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	  2711207	  2713195	-	NA	NA	NA	NA	KCTD5	NA	chr16:2732495-2733395	inter
CUST_36693_PI429285431	3.4801817	P	3.1615992	P	1.24710462139473	0	lncRNA	37875-2_{3001..4107}	n345182|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_731|NULL|-1.3045500|-0.4064426	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345182|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_731|NULL|-1.3045500|-0.4064426	chr12	 63002133	 63003239	+	NA	NA	NA	NA	MON2	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466421125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-39.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0,hg19_refFlat_ADARB1:range=chr21:46591572-466454705'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80chr12:62989133-62991363"	NA	inter
CUST_45080_PI429285431	2.4394932	A	1.8381869	A	1.51708960596785	0	lncRNA	49563-1_{1..1341}	"gi|397139235|ref|XR_108818.2| PREDICTED: Homo sapiens uncharacterized LOC100506881, transcript variant 4 (LOC100506881), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|397139235|ref|XR_108818.2| PREDICTED: Homo sapiens uncharacterized LOC100506881, transcript variant 4 (LOC100506881), misc_RNA"	Chr7	131008241	131009581	-	100506881	XR_108818.3	NA	NA	NA	NA	NA	inter
LNCA_21_P0003722	0.96932715	A	3.182446	P	0.215667568592543	0	lncRNA	TCONS_00008437	NA	NA	NA	NA	XLOC_003883	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003883), lincRNA [TCONS_00008437]"	chr4:12471542-12471483	hs|4p15.33	Agilent_HUMAN_G3V2	TCONS_00008437	TCONS_00008437	chr4	 12471483	 12471542	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011190	0.96991616	A	1.0033525	A	0.977090202894686	0	lncRNA	ENST00000433074	NA	NA	NA	NA	XLOC_l2_004050	NA	ENST00000433074	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004050), lincRNA [TCONS_l2_00007277]"	chr13:85651006-85650947	hs|13q31.1	Agilent_HUMAN_G3V2	ENST00000433074	ENST00000433074	chr13	 85650947	 85651006	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27007_PI429285431	1.1177051	A	1.3431637	A	0.855323094671145	0	lncRNA	28535-1_{1..1125}	n324109|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000143679|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000143679|-0.1886160|-0.2525838	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324109|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000143679|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000143679|-0.1886160|-0.2525838	chr9	 39915025	 39916149	-	NA	NA	NA	NA	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-45.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-33.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60"	NA	inter
CUST_48572_PI429285431	3.252941	A	3.3880365	A	0.910609553291411	0	lncRNA	52420-1_{1..261}	hg19_lincRNAsTranscripts_TCONS_l2_00013426 range=chr2:749809-754320 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013426 range=chr2:749809-754320 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	   749809	   750069	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_25819_PI429285431	1.6925316	A	1.7475394	A	0.962589238802751	0	lncRNA	27340-1_{1..526}	lnc-ADAM22-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAM22-3:2	chr7	 87921503	 87922028	+	lnc-ADAM22-3	lnc-ADAM22-3:2	ENSG00000228113.1	AC003991.3	STEAP4	"hg19_refFlat_STEAP4:range=chr7:87908713-879135845'pad=0,hg19_refFlat_STEAP4:range=chr7:87908713-879135845'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30chr7:87911503-87931781"	NA	inner
CUST_30563_PI429285431	7.9437833	P	7.1224957	P	1.76698231424079	0	lncRNA	32344-1_{1..241}	n335761|X06981|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321226|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321226|0.9081680|-0.1348098	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335761|X06981|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321226|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321226|0.9081680|-0.1348098	chr21	 27369664	 27369904	-	NA	NA	NA	NA	APP	NA	chr21:27359664-27382504	inner
CUST_38716_PI429285431	14.166168	P	14.615555	P	0.732353958499785	0	lncRNA	39710-1_{1..799}	n384181|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bda.1||1.6211800|-0.3718776	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384181|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003bda.1||1.6211800|-0.3718776	chr22	 43035808	 43036606	-	NA	NA	NA	NA	CYB5R3	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-27.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80chr22:43025808-43045405"	NA	inner
CUST_32755_PI429285431	0.9300011	A	0.9240604	A	1.00412626915828	0	lncRNA	34392-1_{1..1988}	n339390|BX647714|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1822|NULL|-1.0797900|-0.3266933	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339390|BX647714|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1822|NULL|-1.0797900|-0.3266933	chr3	 69066554	 69068541	-	NA	NA	NA	NA	TMF1	NA	chr3:69068978-69078522	inter
LNCA_21_P0006890	4.3034444	P	4.9460616	P	0.640549869533025	0	lncRNA	TCONS_00018268	NA	NA	NA	NA	XLOC_008549	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008549), lincRNA [TCONS_00018268]"	chr10:90792706-90792765	hs|10q23.31	Agilent_HUMAN_G3V2	TCONS_00018268	TCONS_00018268	chr10	 90792706	 90792765	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014299	0.90181977	A	0.90609014	A	0.997044381540361	0	lncRNA	ENST00000554388	XR_109221	XR_109221	NA	NA	LOC100507118	NA	ENST00000554388	THC2529081	NA	"PREDICTED: Homo sapiens hypothetical LOC100507118 (LOC100507118), miscRNA [XR_109221]"	chr15:91531155-91531214	hs|15q26.1	Agilent_HUMAN_G3V2	ENST00000554388	ENST00000554388	chr15	 91531155	 91531214	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001895	2.1733518	A	0.90347975	A	2.41140178305807	0	lncRNA	ENST00000422203	NA	NA	NA	NA	XLOC_001618	NA	ENST00000422203	NA	NA	"BROAD Institute lincRNA (XLOC_001618), lincRNA [TCONS_00002969]"	chr2:108022637-108022696	hs|2q12.3	Agilent_HUMAN_G3V2	ENST00000422203	ENST00000422203	chr2	108022637	108022696	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30076_PI429285431	2.0027757	A	1.825321	A	1.13088693714789	0	lncRNA	31845-1_{1..424}	n334594|U79029|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221460_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221460_04|2.1242400|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334594|U79029|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221460_04|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221460_04|2.1242400|-1.0000000	chr6	 31548620	 31549043	-	NA	NA	NA	NA	LST1	NA	chr6:31553956-31556686	inner
LNCA_21_P0012355	0.8957645	A	0.8925351	A	1.00224095670339	0	lncRNA	BC040576	NA	BC040576	NA	Hs.272317	XLOC_l2_009504	NA	NA	THC2624567	NA	"BROAD Institute lincRNA (XLOC_l2_009504), lincRNA [TCONS_l2_00018374]"	chr22:25677360-25677301	hs|22q11.23	Agilent_HUMAN_G3V2	BC040576	BC040576	chr22	 25677301	 25677360	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009895	3.4694047	P	3.1526048	P	1.24556464532786	0	lncRNA	ENST00000437782	NA	NA	NA	NA	XLOC_013711	NA	ENST00000437782	NA	NA	"BROAD Institute lincRNA (XLOC_013711), lincRNA [TCONS_00028032]"	chr20:25982395-25982336	hs|20p11.1	Agilent_HUMAN_G3V2	ENST00000437782	ENST00000437782	chr20	 25982336	 25982395	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48232_PI429285431	0.9233241	A	0.9883871	A	0.955903574024679	0	lncRNA	52094-1_{1..1404}	hg19_lincRNAsTranscripts_TCONS_l2_00000650 range=chr1:157152695-157157512 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000650 range=chr1:157152695-157157512 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	157152695	157154098	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009608	1.680377	A	1.8088481	A	0.914800398930715	0	lncRNA	TCONS_00026626	NA	NA	NA	NA	XLOC_012687	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012687), lincRNA [TCONS_00026626]"	chr18:53817257-53817316	hs|18q21.31	Agilent_HUMAN_G3V2	TCONS_00026626	TCONS_00026626	chr18	 53817257	 53817316	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014282	3.0972793	P	2.7593179	A	1.26396927989413	0	lncRNA	XR_109124	XR_109124	XR_109124	NA	NA	LOC100507560	uncharacterized LOC100507560	NA	THC2631899	NA	"PREDICTED: Homo sapiens hypothetical LOC100507560 (LOC100507560), miscRNA [XR_109124]"	chr12:5134701-5134760	hs|12p13.32	Agilent_HUMAN_G3V2	XR_109124	XR_109124	chr12	  5134701	  5134760	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012740	0.93030715	A	0.8831191	A	1.03324905912703	0	lncRNA	TCONS_l2_00021704	NA	NA	NA	NA	XLOC_l2_010831	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010831), lincRNA [TCONS_l2_00021704]"	chr4:129392160-129392219	hs|4q28.2	Agilent_HUMAN_G3V2	TCONS_l2_00021704	TCONS_l2_00021704	chr4	129392160	129392219	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013092	0.90062976	A	0.8833664	A	1.01203792889782	0	lncRNA	TCONS_l2_00024914	NA	NA	NA	NA	XLOC_l2_013119	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013119), lincRNA [TCONS_l2_00024914]"	chr6:132919874-132919815	hs|6q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00024914	TCONS_l2_00024914	chr6	132919815	132919874	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39245_PI429285431	1.0534009	A	1.5568476	A	0.705419469670539	0	lncRNA	40216-1_{1..1939}	n386101|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010azf.2||4.4615300|-0.2500219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n386101|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010azf.2||4.4615300|-0.2500219	chr15	 28982728	 28984666	+	NA	NA	NA	NA	LOC653720	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-52.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.30;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-63.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50chr15:28972728-28983530"	NA	inter
LNCA_21_P0009213	0.9025444	A	0.8874905	A	1.01048919829766	0	lncRNA	TCONS_00025290	NA	NA	NA	NA	XLOC_012091	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012091), lincRNA [TCONS_00025290]"	chr17:5373625-5373684	hs|17p13.2	Agilent_HUMAN_G3V2	TCONS_00025290	TCONS_00025290	chr17	  5373625	  5373684	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009081	0.9024115	A	2.078496	A	0.442550960906317	0	lncRNA	TCONS_00024758	NA	NA	NA	NA	XLOC_012042	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012042), lincRNA [TCONS_00024758]"	chr16:86191797-86191738	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024758	TCONS_00024758	chr16	 86191738	 86191797	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36010_PI429285431	3.499403	P	3.3517942	P	1.10773193545698	0	lncRNA	37344-1_{1..380}	n344622|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_170|NULL|-1.2785600|-0.3175158	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344622|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_170|NULL|-1.2785600|-0.3175158	chr1	211565168	211565547	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001218	2.2426426	A	3.2207549	P	0.507643533706609	0	lncRNA	ENST00000424696	NA	NA	NA	NA	XLOC_001186	NA	ENST00000424696	NA	NA	"BROAD Institute lincRNA (XLOC_001186), lincRNA [TCONS_00000720]"	chr1:209701861-209701802	hs|1q32.2	Agilent_HUMAN_G3V2	ENST00000424696	ENST00000424696	chr1	209701802	209701861	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17130_PI429285431	7.4694524	P	7.5121436	P	0.970842250344058	0	lncRNA	18840-1_{1..3000}	lnc-PTGES2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PTGES2-1:3	chr9	130880202	130883201	-	lnc-PTGES2-1	lnc-PTGES2-1:3	XLOC_007858	linc-NAIF1	SLC25A25	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-66.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10chr9:130870202-130871524"	NA	inter
CUST_47896_PI429285431	6.682219	P	6.4711733	P	1.15752688318723	0	lncRNA	51789-1_{1..963}	"gi|410171820|ref|XR_171397.1| PREDICTED: Homo sapiens uncharacterized LOC100506377 (LOC100506377), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|410171820|ref|XR_171397.1| PREDICTED: Homo sapiens uncharacterized LOC100506377 (LOC100506377), misc_RNA"	NA	NA	NA	NA	NA	XR_171397.1	NA	NA	NA	NA	NA	Unknown
CUST_8110_PI429285431	2.0178053	A	1.4571117	A	1.47497816751576	0	lncRNA	9713-1_{1..373}	lnc-C20orf197-3:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf197-3:7	chr20	 58859535	 58859907	+	lnc-C20orf197-3	lnc-C20orf197-3:7	ENSG00000228340	RP5-1043L13.1	NA	NA	NA	inter
CUST_48916_PI429285431	1.7801878	A	1.4564141	A	1.25160011825352	0	lncRNA	52758-1_{1..363}	hg19_lincRNAsTranscripts_TCONS_l2_00020190 range=chr3:129112015-129115136 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020190 range=chr3:129112015-129115136 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	129112015	129112377	-	NA	NA	NA	NA	C3orf25	NA	chr3:129120164-129125136	inter
CUST_19575_PI429285431	1.5445384	A	1.8242133	A	0.823776627948977	0	lncRNA	21231-1_{1..1171}	lnc-C11orf21-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C11orf21-1:2	chr11	  2398816	  2399986	-	lnc-C11orf21-1	lnc-C11orf21-1:2	ENSG00000238184.1	AC129929.5	CD81	NA	chr11:2398547-2409219	inner
CUST_38314_PI429285431	4.3891597	P	3.0262682	A	2.57200152843394	0	lncRNA	39363-1_{1..1723}	n382011|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uvg.2||-1.3500300|-0.4583363	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382011|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uvg.2||-1.3500300|-0.4583363	chr13	 36420037	 36421759	-	NA	NA	NA	NA	DCLK1	NA	chr13:36410037-36431760	inner
LNCA_21_P0009640	5.435223	P	5.24782	P	1.13871207056188	0	lncRNA	TCONS_00026741	NA	NA	NA	NA	XLOC_012899	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012899), lincRNA [TCONS_00026741]"	chr18:76556369-76556310	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026741	TCONS_00026741	chr18	 76556310	 76556369	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006387	0.9245931	A	0.96984553	A	0.969120234024593	0	lncRNA	TCONS_00016847	NA	NA	NA	NA	XLOC_007808	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007808), lincRNA [TCONS_00016847]"	chr9:102480354-102480295	hs|9q22.33	Agilent_HUMAN_G3V2	TCONS_00016847	TCONS_00016847	chr9	102480295	102480354	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15318_PI429285431	0.9190936	A	0.9296601	A	0.99270261646589	0	lncRNA	16997-1_{1..1452}	lnc-CMPK2-4:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CMPK2-4:4	chr2	  6790238	  6791689	-	lnc-CMPK2-4	lnc-CMPK2-4:4	XLOC_001964	linc-RNASEH1-13	NA	NA	NA	inter
CUST_48985_PI429285431	7.095864	P	7.3547263	P	0.835746724103494	0	lncRNA	52821-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00019098 range=chr3:195722896-195731930 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019098 range=chr3:195722896-195731930 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	195722896	195725895	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013585	0.9152478	A	0.92625934	A	0.992396436555891	0	lncRNA	ENST00000417703	NA	AK057820	NA	NA	XLOC_l2_014832	NA	ENST00000417703	THC2465483	NA	"BROAD Institute lincRNA (XLOC_l2_014832), lincRNA [TCONS_l2_00028814]"	chr9:43065024-43064966	hs|9p12	Agilent_HUMAN_G3V2	ENST00000417703	ENST00000417703	chr9	 43064966	 43065024	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1952_PI429285431	0.9054014	A	0.8984004	A	1.00486451694255	0	lncRNA	1945-1_{1..501}	"transcript_id ""ENST00000603766.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000603766.1"" | genecode_v17"	chr4	153241696	153242196	-	ENSG00000270750.1	ENST00000603766.1	RP11-461L13.3	RP11-461L13.3-001	FBXW7	NA	chr4:153242410-153252196	inter
LNCA_21_P0004333	0.9045867	A	0.9103296	A	0.996027237440906	0	lncRNA	TCONS_00010169	NA	NA	NA	NA	XLOC_004632	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004632), lincRNA [TCONS_00010169]"	chr5:171962699-171962758	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00010169	TCONS_00010169	chr5	171962699	171962758	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006898	0.9016614	A	0.90574074	A	0.997176410828122	0	lncRNA	TCONS_00018289	NA	NA	NA	NA	XLOC_008568	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008568), lincRNA [TCONS_00018289]"	chr10:97051414-97051893	hs|10q24.1	Agilent_HUMAN_G3V2	TCONS_00018289	TCONS_00018289	chr10	 97051414	 97051893	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010881	14.599641	P	14.550859	P	1.03439126689409	0	lncRNA	TCONS_l2_00003581	NA	NA	NA	NA	XLOC_l2_001984	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001984), lincRNA [TCONS_l2_00003581]"	chr10:54149093-54149034	hs|10q21.1	Agilent_HUMAN_G3V2	TCONS_l2_00003581	TCONS_l2_00003581	chr10	 54149034	 54149093	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32408_PI429285431	6.2152343	P	6.7254367	P	0.702123927894295	0	lncRNA	34084-1_{1..593}	n339002|AF251187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1431|NULL|-1.2358100|-0.4111868	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339002|AF251187|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1431|NULL|-1.2358100|-0.4111868	chr2	169702752	169703344	-	NA	NA	NA	NA	NOSTRIN	NA	chr2:169692752-169713344	inner
LNCA_19_P00316107	3.1457322	P	2.971387	P	1.12845211486619	0	lncRNA	ENST00000422861	XR_109604	XR_109604	NA	Hs.709356	L3MBTL1	l(3)mbt-like 1 (Drosophila)	ENST00000422861	THC2682070	GO:0005515|GO:0030097|GO:0000793|GO:0007088|GO:0003700|GO:0005730|GO:0031491|GO:0005634|GO:0035064|GO:0031493|GO:0046872|GO:0032093|GO:0042802|GO:0045652|GO:0042393|GO:0003682|GO:0051726|GO:0005654|GO:0008270|GO:0045892|GO:0000785|GO:0016568	"PREDICTED: Homo sapiens hypothetical LOC100505763 (LOC100505763), miscRNA [XR_109604]"	chr20:42179367-42179426	hs|20q13.12	Agilent_HUMAN_G3V2	ENST00000422861	ENST00000422861	chr20	 42179367	 42179426	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2008_PI429285431	0.91165745	A	0.9116078	A	1.00003441534971	0	lncRNA	1999-1_{1..474}	"transcript_id ""ENST00000503037.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503037.1"" | genecode_v17"	chr4	187900644	187901117	-	ENSG00000249742.1	ENST00000503037.1	RP11-217E13.1	RP11-217E13.1-001	NA	NA	NA	inter
CUST_48028_PI429285431	4.975155	P	5.302194	P	0.797170926534834	0	lncRNA	51910-1_{1..2265}	"gi|410173689|ref|XR_172343.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 650 (LINC00650), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410173689|ref|XR_172343.1| PREDICTED: Homo sapiens long intergenic non-protein coding RNA 650 (LINC00650), misc_RNA"	NA	NA	NA	NA	NA	XR_172343.1	NA	NA	NA	NA	NA	Unknown
CUST_9076_PI429285431	0.92164814	A	0.92271364	A	0.999261724338796	0	lncRNA	10599-1_{1..595}	lnc-RPS24-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RPS24-3:6	chr10	 80310395	 80310989	+	lnc-RPS24-3	lnc-RPS24-3:6	ENSG00000230417	RP11-90J7.3	NA	NA	NA	inter
CUST_13148_PI429285431	0.9150057	A	0.9138865	A	1.00077607131211	0	lncRNA	14775-1_{1..521}	lnc-C9orf123-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C9orf123-5:1	chr9	  7345540	  7346060	-	lnc-C9orf123-5	lnc-C9orf123-5:1	XLOC_007640	linc-GLDC-2	NA	NA	NA	inter
LNCA_21_P0012095	4.8226733	P	4.3379145	P	1.39935189245239	0	lncRNA	ENST00000454537	NA	NA	NA	NA	XLOC_l2_008313	NA	ENST00000454537	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008313), lincRNA [TCONS_l2_00015996]"	chr2:154278302-154278243	hs|2q23.3	Agilent_HUMAN_G3V2	ENST00000454537	ENST00000454537	chr2	154278243	154278302	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34771_PI429285431	1.0839032	A	2.3528893	A	0.414951290725941	0	lncRNA	36210-2_{3001..3764}	n341680|AK125920|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4151|NULL|-0.2987310|-0.2022492	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341680|AK125920|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4151|NULL|-0.2987310|-0.2022492	chr9	 34668492	 34669255	+	NA	NA	NA	NA	IL11RA	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-35.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.52;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-36.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60chr9:34655492-34661884"	NA	inter
LNCA_21_P0014568	2.7400956	A	2.6323512	A	1.07754222167918	0	lncRNA	XR_110328	XR_110328	XR_110328	NA	Hs.339918	LOC100507616	uncharacterized LOC100507616	NA	THC2602111	NA	"PREDICTED: Homo sapiens hypothetical LOC100507616 (LOC100507616), miscRNA [XR_110328]"	chr12:92877658-92877717	hs|12q22	Agilent_HUMAN_G3V2	XR_110328	XR_110328	chr12	 92877658	 92877717	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012926	1.6774943	A	2.3216553	A	0.639864796140443	0	lncRNA	TCONS_l2_00023086	NA	NA	NA	NA	XLOC_l2_012210	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012210), lincRNA [TCONS_l2_00023086]"	chr5:126383142-126382355	hs|5q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00023086	TCONS_l2_00023086	chr5	126382355	126383142	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005157	5.661075	P	5.702407	P	0.97175733672358	0	lncRNA	TCONS_00012662	NA	NA	NA	NA	XLOC_005621	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005621), lincRNA [TCONS_00012662]"	chr6:15757889-15753199	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00012662	TCONS_00012662	chr6	 15753199	 15757889	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002271	0.954627	A	1.0047814	A	0.965832958091379	0	lncRNA	TCONS_00003820	NA	NA	NA	NA	XLOC_001628	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001628), lincRNA [TCONS_00003820]"	chr2:113438597-113438656	hs|2q13	Agilent_HUMAN_G3V2	TCONS_00003820	TCONS_00003820	chr2	113438597	113438656	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7005_PI429285431	7.1089063	P	7.1580667	P	0.966498634992285	0	lncRNA	6952-1_{1..498}	"transcript_id ""ENST00000414483.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000414483.1"" | genecode_v17"	chr22	 48535278	 48535775	-	ENSG00000238192.1	ENST00000414483.1	LL22NC03-121E8.4	LL22NC03-121E8.4-001	NA	NA	NA	inter
CUST_9126_PI429285431	1.320432	A	0.9265276	A	1.31394455589873	0	lncRNA	10645-1_{1..2233}	lnc-HSP90AA1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSP90AA1-2:1	chr14	102674938	102677170	-	lnc-HSP90AA1-2	lnc-HSP90AA1-2:1	ENSG00000247143	ENST00000499851	WDR20	"hg19_refFlat_WDR20:range=chr14:102606261-1026789195'pad=0,hg19_refFlat_WDR20:range=chr14:102606261-1026789195'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.30;hg19_refFlat_WDR20:range=chr14:102606261-1026762175'pad=0,hg19_refFlat_WDR20:range=chr14:102606261-1026762175'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.30;hg19_refFlat_WDR20:range=chr14:102606261-1026892205'pad=0,hg19_refFlat_WDR20:range=chr14:102606261-1026892205'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.30;hg19_refFlat_WDR20:range=chr14:102606261-1026598115'pad=0,hg19_refFlat_WDR20:range=chr14:102606261-1026598115'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.30chr14:102664938-102686863"	NA	inner
CUST_37541_PI429285431	4.0747595	P	4.2509646	P	0.885027936093307	0	lncRNA	38647-1_{1..301}	n346018|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1568|NULL|-1.5489500|-0.2645296	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346018|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1568|NULL|-1.5489500|-0.2645296	chr2	 88316325	 88316625	+	NA	NA	NA	NA	KRCC1	NA	chr2:88306325-88330375	inter
LNCA_21_P0012603	2.9718952	A	3.356235	P	0.766129511286155	0	lncRNA	ENST00000508358	NA	NA	NA	NA	XLOC_l2_010772	NA	ENST00000508358	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010772), lincRNA [TCONS_l2_00020665]"	chr4:105479237-105488707	hs|4q24	Agilent_HUMAN_G3V2	ENST00000508358	ENST00000508358	chr4	105479237	105488707	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003452	3.4893339	P	4.1645837	P	0.626223780425437	0	lncRNA	ENST00000503085	NA	NA	NA	NA	XLOC_003911	NA	ENST00000503085	NA	NA	"BROAD Institute lincRNA (XLOC_003911), lincRNA [TCONS_00007729]"	chr4:25866688-25866629	hs|4p15.2	Agilent_HUMAN_G3V2	ENST00000503085	ENST00000503085	chr4	 25866629	 25866688	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008499	7.1047378	P	7.4913645	P	0.76491603677094	0	lncRNA	TCONS_00022896	NA	NA	NA	NA	XLOC_011150	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011150), lincRNA [TCONS_00022896]"	chr14:105491461-105491402	hs|14q32.33	Agilent_HUMAN_G3V2	TCONS_00022896	TCONS_00022896	chr14	105491402	105491461	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012824	0.914204	A	0.9245918	A	0.99282558558937	0	lncRNA	TCONS_l2_00022219	NA	NA	NA	NA	XLOC_l2_011508	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011508), lincRNA [TCONS_l2_00022219]"	chr5:17878161-17878220	hs|5p15.1	Agilent_HUMAN_G3V2	TCONS_l2_00022219	TCONS_l2_00022219	chr5	 17878161	 17878220	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009292	0.91276175	A	0.92235786	A	0.993370555780274	0	lncRNA	TCONS_00025541	NA	NA	NA	NA	XLOC_012368	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012368), lincRNA [TCONS_00025541]"	chr17:6258126-6258067	hs|17p13.2	Agilent_HUMAN_G3V2	TCONS_00025541	TCONS_00025541	chr17	  6258067	  6258126	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25760_PI429285431	4.383568	P	4.494998	P	0.925670082395607	0	lncRNA	27285-1_{1..651}	lnc-SERPINH1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SERPINH1-1:1	chr11	 75305146	 75305796	+	lnc-SERPINH1-1	lnc-SERPINH1-1:1	ENSG00000255326.1	CTD-2530H12.4	MAP6	NA	chr11:75297963-75315710	inner
LNCA_21_P0007565	2.8837075	A	2.544427	A	1.26512549398971	0	lncRNA	ENST00000548617	NA	NA	NA	NA	XLOC_009769	NA	ENST00000548617	NA	NA	"BROAD Institute lincRNA (XLOC_009769), lincRNA [TCONS_00020439]"	chr12:54823117-54823176	hs|12q13.13	Agilent_HUMAN_G3V2	ENST00000548617	ENST00000548617	chr12	 54823117	 54823176	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006495	7.7422395	P	8.29941	P	0.679633796001456	0	lncRNA	TCONS_00017163	NA	NA	NA	NA	XLOC_007974	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007974), lincRNA [TCONS_00017163]"	chrX:47544808-47544867	hs|Xp11.23	Agilent_HUMAN_G3V2	TCONS_00017163	TCONS_00017163	chrX	 47544808	 47544867	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29607_PI429285431	4.87255	P	4.756463	P	1.08379132161439	0	lncRNA	31368-1_{1..306}	n333141|AF361106|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078371|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078371|-0.8241690|-0.0773228	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333141|AF361106|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000078371|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000078371|-0.8241690|-0.0773228	chr7	 30721836	 30722141	-	NA	NA	NA	NA	CRHR2	NA	chr7:30711836-30739719	inner
LNCA_21_P0002598	0.89539164	A	0.8902571	A	1.0035653326562	0	lncRNA	TCONS_00004809	NA	NA	NA	NA	XLOC_001515	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001515), lincRNA [TCONS_00004809]"	chr2:67792200-67792259	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00004809	TCONS_00004809	chr2	 67792200	 67792259	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011650	0.89498675	A	0.88619643	A	1.00611158551783	0	lncRNA	TCONS_l2_00011879	NA	NA	NA	NA	XLOC_l2_006339	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006339), lincRNA [TCONS_l2_00011879]"	chr18:69500596-69500655	hs|18q22.3	Agilent_HUMAN_G3V2	TCONS_l2_00011879	TCONS_l2_00011879	chr18	 69500596	 69500655	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005466	0.89550495	A	0.88381803	A	1.00813365554647	0	lncRNA	TCONS_00013682	NA	NA	NA	NA	XLOC_006344	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006344), lincRNA [TCONS_00013682]"	chr7:4455817-4455758	hs|7p22.2	Agilent_HUMAN_G3V2	TCONS_00013682	TCONS_00013682	chr7	  4455758	  4455817	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21318_PI429285431	1.809318	A	2.670068	A	0.55066621396508	0	lncRNA	22941-1_{1..553}	lnc-MBOAT1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-MBOAT1-4:1	chr6	 19640712	 19641264	-	lnc-MBOAT1-4	lnc-MBOAT1-4:1	ENSG00000226786.1	RP1-167F1.2	NA	NA	NA	inter
CUST_26903_PI429285431	0.9163971	A	0.89445156	A	1.0153277727456	0	lncRNA	28421-1_{1..256}	n323979|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053813|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053813|-1.2170700|-0.4482011	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323979|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000053813|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000053813|-1.2170700|-0.4482011	chr9	120542661	120542916	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_44882_PI429285431	1.834746	A	0.92000306	A	1.88523313028818	0	lncRNA	49406-1_{1..2434}	"gi|336088614|ref|NR_038393.1| Homo sapiens uncharacterized LOC100506178 (LOC100506178), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336088614|ref|NR_038393.1| Homo sapiens uncharacterized LOC100506178 (LOC100506178), non-coding RNA"	Chr7	 22602956	 22605389	+	100506178	NR_038393.1	NA	NA	NA	NA	NA	inter
CUST_20012_PI429285431	1.5465637	A	1.1145858	A	1.34908186819973	0	lncRNA	21665-1_{1..550}	lnc-ZAP70-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZAP70-2:2	chr2	 98287794	 98288343	+	lnc-ZAP70-2	lnc-ZAP70-2:2	ENSG00000228486.2	AC017099.3	ACTR1B	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10chr2:98277794-98280561"	NA	inter
CUST_16652_PI429285431	0.9224949	A	0.92106706	A	1.00099019318818	0	lncRNA	18354-1_{1..717}	lnc-SLC39A7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC39A7-2:1	chr6	 33114992	 33115708	+	lnc-SLC39A7-2	lnc-SLC39A7-2:1	XLOC_005260	linc-SLC39A7	NA	"hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0,hg19_refFlat_NVL:range=chr1:224415328-2244928355'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50"	NA	inter
CUST_15696_PI429285431	7.0653877	P	6.7418146	P	1.25142610120744	0	lncRNA	17383-1_{1..1935}	lnc-GNA12-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GNA12-1:1	chr7	  2763099	  2765033	-	lnc-GNA12-1	lnc-GNA12-1:1	XLOC_006336	linc-C7orf27-1	AMZ1	"hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-67.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40chr7:2753099-2755069"	NA	inter
LNCA_21_P0007367	6.325909	P	6.481261	P	0.897913266266137	0	lncRNA	TCONS_00019696	NA	NA	NA	NA	XLOC_009493	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009493), lincRNA [TCONS_00019696]"	chr11:71213359-71213300	hs|11q13.4	Agilent_HUMAN_G3V2	TCONS_00019696	TCONS_00019696	chr11	 71213300	 71213359	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010391	1.117423	A	0.88726735	A	1.17296149129561	0	lncRNA	TCONS_00029502	NA	NA	NA	NA	XLOC_014145	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014145), lincRNA [TCONS_00029502]"	chr22:18518950-18525831	hs|22q11.21	Agilent_HUMAN_G3V2	TCONS_00029502	TCONS_00029502	chr22	 18518950	 18525831	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8336_PI429285431	1.0183727	A	1.4264381	A	0.753633290431936	0	lncRNA	9918-1_{1..349}	lnc-CCDC140-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CCDC140-1:3	chr2	223186186	223186534	+	lnc-CCDC140-1	lnc-CCDC140-1:3	ENSG00000237732	AC010980.2	NA	NA	NA	inter
LNCA_21_P0007237	2.1788487	A	2.9502964	A	0.585829317905398	0	lncRNA	BC039366	NA	BC039366	NA	Hs.569025	XLOC_009215	NA	NA	THC2605307	NA	"BROAD Institute lincRNA (XLOC_009215), lincRNA [TCONS_00019389]"	chr11:74035192-74035251	hs|11q13.4	Agilent_HUMAN_G3V2	BC039366	BC039366	chr11	 74035192	 74035251	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13348_PI429285431	0.9193373	A	1.5593202	A	0.641720554932541	0	lncRNA	14985-1_{1..348}	lnc-SORCS3-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SORCS3-6:2	chr10	108070596	108070943	+	lnc-SORCS3-6	lnc-SORCS3-6:2	XLOC_008604	linc-ADD3-7	NA	NA	NA	inter
LNCA_33_P3589543	3.7577126	P	4.5477915	P	0.578312463576715	0	lncRNA	ENST00000527620	XR_109057	XR_109057	NA	Hs.560022	NA	NA	ENST00000527620	THC2480441	NA	"PREDICTED: Homo sapiens hypothetical locus LOC692247 (LOC692247), miscRNA [XR_109057]"	chr11:560045-560104	hs|11p15.5	Agilent_HUMAN_G3V2	ENST00000527620	ENST00000527620	chr11	   560045	   560104	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008342	0.91618246	A	0.92752683	A	0.992167516930125	0	lncRNA	TCONS_00022518	NA	NA	NA	NA	XLOC_010842	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010842), lincRNA [TCONS_00022518]"	chr14:56970470-56970529	hs|14q22.3	Agilent_HUMAN_G3V2	TCONS_00022518	TCONS_00022518	chr14	 56970470	 56970529	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8481_PI429285431	3.5215924	P	4.683915	P	0.446792663021608	0	lncRNA	10045-1_{1..422}	lnc-EVX1-10:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EVX1-10:4	chr7	 27161538	 27161959	+	lnc-EVX1-10	lnc-EVX1-10:4	ENSG00000253552	AC004080.12	HOXA3	NA	chr7:27151538-27166639	inner
CUST_290_PI429201921	0.9064416	A	0.9082351	A	0.998757612934291	0	lncRNA	204-1_{1..3000}	TC08002200.hg.1	TCONS_l2_00028534-XLOC_l2_014420 // Broad TUCP // linc-DEFB105B-4 chr8:-:7847937-7855043 // chr8 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr8:-:7847937-7855043	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00028534-XLOC_l2_014420	linc-DEFB105B-4	chr8	  7847937	  7855043	-	NA	NA	NA	NA	SCMH1	NA	chr1:41698045-41707815	Unknown
LNCA_21_P0004973	0.90484357	A	0.9105174	A	0.996074924059481	0	lncRNA	TCONS_00012022	NA	NA	NA	NA	XLOC_005549	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005549), lincRNA [TCONS_00012022]"	chr6:169367595-169367654	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012022	TCONS_00012022	chr6	169367595	169367654	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31602_PI429285431	1.5789726	A	1.3254408	A	1.19212192841682	0	lncRNA	33358-1_{1..1830}	n338112|BC053353|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|500|NULL|-1.1258900|-0.2464817	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338112|BC053353|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|500|NULL|-1.1258900|-0.2464817	chr1	109233370	109235199	-	NA	NA	NA	NA	PRPF38B	NA	chr1:109234932-109244425	inter
LNCA_21_P0007665	0.8975732	A	0.89663184	A	1.000652713955	0	lncRNA	TCONS_00020644	NA	NA	NA	NA	XLOC_009944	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009944), lincRNA [TCONS_00020644]"	chr12:127634814-127634972	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020644	TCONS_00020644	chr12	127634814	127634972	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39540_PI429285431	0.89970225	A	0.9008312	A	0.999217777586093	0	lncRNA	40485-1_{1..1551}	n387451|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ejy.1||-1.0968500|-0.3839488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387451|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011ejy.1||-1.0968500|-0.3839488	chr6	  1213595	  1215145	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_9096_PI429285431	4.532305	P	4.985201	P	0.730574852548158	0	lncRNA	10618-1_{1..471}	lnc-PEBP4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PEBP4-1:2	chr8	 22864897	 22865367	-	lnc-PEBP4-1	lnc-PEBP4-1:2	ENSG00000245025	RP11-875O11.1	RHOBTB2	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RHOBTB2:range=chr8:22853385-228749825'pad=0,hg19_refFlat_RHOBTB2:range=chr8:22853385-228749825'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_RHOBTB2:range=chr8:22861948-228749825'pad=0,hg19_refFlat_RHOBTB2:range=chr8:22861948-228749825'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10;hg19_refFlat_RHOBTB2:range=chr8:22852097-228749825'pad=0,hg19_refFlat_RHOBTB2:range=chr8:22852097-228749825'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.10chr8:22854897-22875044"	NA	inner
CUST_23920_PI429285431	3.508515	P	2.8271484	A	1.60365810899257	0	lncRNA	25477-1_{1..980}	lnc-AGAP8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGAP8-2:1	chr10	 51370854	 51371833	-	lnc-AGAP8-2	lnc-AGAP8-2:1	ENSG00000244393.2	RP11-592B15.3	TIMM23B	NA	chr10:51371379-51381338	inner
CUST_49622_PI429285431	5.1008368	P	5.438172	P	0.791501944620886	0	lncRNA	53408-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00025640 range=chr7:6677494-6697399 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00025640 range=chr7:6677494-6697399 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr7	  6677494	  6680493	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40"	NA	inter
LNCA_21_P0004249	0.89525634	A	1.3156383	A	0.74722676647998	0	lncRNA	TCONS_00009957	NA	NA	NA	NA	XLOC_004377	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004377), lincRNA [TCONS_00009957]"	chr5:50176194-50176253	hs|5q11.1	Agilent_HUMAN_G3V2	TCONS_00009957	TCONS_00009957	chr5	 50176194	 50176253	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29864_PI429285431	1.1938342	A	1.2864852	A	0.937797930184459	0	lncRNA	31627-1_{1..628}	n333836|L23207|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192532|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192532|-0.7890210|-0.2340922	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333836|L23207|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000192532|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000192532|-0.7890210|-0.2340922	chr13	 21296609	 21297236	-	NA	NA	NA	NA	N6AMT2	NA	chr13:21303073-21307237	inner
CUST_38448_PI429285431	4.45058	P	4.8562403	P	0.754890711485557	0	lncRNA	39470-2_{3001..6000}	n382698|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bkm.2||7.2242100|-0.3041773	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n382698|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002bkm.2||7.2242100|-0.3041773	chr15	 85050737	 85053736	-	NA	NA	NA	NA	NA	"hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0,hg19_refFlat_DNM1:range=chr9:130965750-1310169935'pad=0 3'pad=0 strand=+ repeatMasking=none,-97.50"	NA	inter
CUST_48509_PI429285431	0.8993587	A	0.8832219	A	1.01124796540011	0	lncRNA	52362-1_{1..2064}	hg19_lincRNAsTranscripts_TCONS_l2_00014789 range=chr2:111964785-112252624 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014789 range=chr2:111964785-112252624 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	111964785	111966848	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_38400_PI429285431	4.6078978	P	5.117149	P	0.702587006006458	0	lncRNA	39435-2_{3001..4429}	n382338|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yxm.1||-0.8811550|-0.1830032	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382338|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yxm.1||-0.8811550|-0.1830032	chr15	 25307603	 25309031	+	NA	NA	NA	NA	SNRPN	NA	chr15:25294603-25370803	inter
CUST_18307_PI429285431	0.918218	A	1.3390905	A	0.746972740300427	0	lncRNA	20036-1_{1..3000}	lnc-ITSN1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-ITSN1-2:2	chr21	 35341538	 35344537	+	lnc-ITSN1-2	lnc-ITSN1-2:2	ENSG00000237945	AP000569.8	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-54.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50"	NA	inter
LNCA_21_P0013727	2.4711232	A	1.4788544	A	1.98931094718145	0	lncRNA	BC065763	NA	BC065763	NA	Hs.567047	XLOC_l2_015202	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015202), lincRNA [TCONS_l2_00029962]"	chr9:66688868-66688809	hs|9q13	Agilent_HUMAN_G3V2	BC065763	BC065763	chr9	 66688809	 66688868	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12739_PI429285431	0.904265	A	0.8859221	A	1.01279550015025	0	lncRNA	14364-1_{1..1368}	lnc-C3orf77-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C3orf77-2:1	chr3	 44058656	 44060023	+	lnc-C3orf77-2	lnc-C3orf77-2:1	XLOC_002629	linc-C3orf77	NA	NA	NA	inter
LNCA_21_P0012616	11.023423	P	10.681831	P	1.26715411504205	0	lncRNA	TCONS_l2_00020780	NA	NA	NA	NA	XLOC_l2_010854	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010854), lincRNA [TCONS_l2_00020780]"	chr4:138972483-138983985	hs|4q28.3	Agilent_HUMAN_G3V2	TCONS_l2_00020780	TCONS_l2_00020780	chr4	138972483	138983985	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17181_PI429285431	2.647583	A	3.3795493	P	0.602082754538626	0	lncRNA	18892-1_{1..440}	lnc-ZNF705D-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF705D-3:8	chr8	 12299097	 12299536	+	lnc-ZNF705D-3	lnc-ZNF705D-3:8	XLOC_006721	linc-C8orf79-2	LOC100127885	"hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-28.30chr8:12295164-12309373"	NA	inter
CUST_1538_PI429285431	1.3773439	A	0.8963112	A	1.39574239953917	0	lncRNA	1525-1_{1..594}	"transcript_id ""ENST00000494915.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000494915.1"" | genecode_v17"	chr3	164924769	164925362	+	ENSG00000244128.1	ENST00000494915.1	RP11-85M11.2	RP11-85M11.2-002	NA	NA	NA	inter
CUST_4347_PI429285431	0.91134167	A	0.90543485	A	1.0041026887081	0	lncRNA	4302-1_{1..277}	"transcript_id ""ENST00000551856.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000551856.1"" | genecode_v17"	chr12	 82898990	 82899266	-	ENSG00000257837.1	ENST00000551856.1	RP11-263K4.4	RP11-263K4.4-001	NA	NA	NA	inter
LNCA_21_P0005500	0.89748883	A	0.88867384	A	1.00612879011362	0	lncRNA	TCONS_00013850	NA	NA	NA	NA	XLOC_006483	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006483), lincRNA [TCONS_00013850]"	chr7:66440248-66435144	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_00013850	TCONS_00013850	chr7	 66435144	 66440248	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20706_PI429285431	0.9866593	A	1.0108527	A	0.983370239822155	0	lncRNA	22342-1_{1..3000}	lnc-TMEM106C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TMEM106C-1:1	chr12	 48416618	 48419617	+	lnc-TMEM106C-1	lnc-TMEM106C-1:1	ENSG00000257985.1	RP1-228P16.4	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10"	NA	inter
LNCA_21_P0013644	2.175611	A	2.7272158	A	0.682260784745535	0	lncRNA	TCONS_l2_00029330	NA	NA	NA	NA	XLOC_l2_015205	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015205), lincRNA [TCONS_l2_00029330]"	chr9:67284256-67284197	hs|9q13	Agilent_HUMAN_G3V2	TCONS_l2_00029330	TCONS_l2_00029330	chr9	 67284197	 67284256	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31754_PI429285431	5.795263	P	6.114677	P	0.801395325646755	0	lncRNA	33494-1_{1..1567}	n338292|AF070529|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|686|NULL|-0.7387210|-0.1614586	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338292|AF070529|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|686|NULL|-0.7387210|-0.1614586	chr19	  8483418	  8484984	-	NA	NA	NA	NA	HNRNPM	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-56.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.20;hg19_refFlat_MARCH2:range=chr19:8486725-85034305'pad=0,hg19_refFlat_MARCH2:range=chr19:8486725-85034305'pad=0 3'pad=0 strand=+ repeatMasking=none,-102.90;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60chr19:8509803-8513964"	NA	inner
CUST_44489_PI429285431	0.92370456	A	0.964185	A	0.972331092038255	0	lncRNA	49091-1_{1..3000}	"gi|212286175|ref|NR_024424.1| Homo sapiens uncharacterized LOC255167 (LOC255167), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|212286175|ref|NR_024424.1| Homo sapiens uncharacterized LOC255167 (LOC255167), non-coding RNA"	Chr5	  6583410	  6586409	+	255167	NR_024424.1	NA	NA	NA	"hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-51.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60"	NA	inter
CUST_4923_PI429285431	0.92412937	A	1.503523	A	0.669245004410575	0	lncRNA	4866-1_{1..558}	"transcript_id ""ENST00000557547.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557547.1"" | genecode_v17"	chr14	 85828801	 85829358	-	ENSG00000258902.1	ENST00000557547.1	CTD-2128A3.2	CTD-2128A3.2-001	NA	NA	NA	inter
LNCA_21_P0008880	0.90734416	A	0.9141247	A	0.995311115121041	0	lncRNA	XR_109276	XR_109276	XR_109276	NA	Hs.638521	LOC100506705	uncharacterized LOC100506705	NA	THC2508499	NA	"PREDICTED: Homo sapiens hypothetical LOC100506705 (LOC100506705), miscRNA [XR_109276]"	chr16:28296269-28296210	hs|16p11.2	Agilent_HUMAN_G3V2	XR_109276	XR_109276	chr16	 28296210	 28296269	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_782_PI429285431	0.90921855	A	0.90227586	A	1.00482390374001	0	lncRNA	774-1_{1..596}	"transcript_id ""ENST00000448650.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448650.1"" | genecode_v17"	chr2	 16909391	 16909986	+	ENSG00000223536.1	ENST00000448650.1	AC008069.1	AC008069.1-001	NA	NA	NA	inter
LNCA_21_P0008679	0.89598966	A	0.8917037	A	1.00297521829268	0	lncRNA	TCONS_00023520	NA	NA	NA	NA	XLOC_011362	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011362), lincRNA [TCONS_00023520]"	chr15:94073632-94076026	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00023520	TCONS_00023520	chr15	 94073632	 94076026	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19134_PI429285431	0.90806794	A	0.9091735	A	0.999233977748023	0	lncRNA	20813-2_{3001..6000}	lnc-MYB-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-MYB-6:1	NA	     3000	     5999	NA	NA	NA	NA	NA	NA	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0,hg19_refFlat_C21orf7:range=chr21:30458182-305472135'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0,hg19_refFlat_AP4S1:range=chr14:31535403-315528155'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00"	NA	Unknown
LNCA_21_P0005319	0.8954982	A	0.889326	A	1.00428740777457	0	lncRNA	ENST00000411946	NA	NA	NA	NA	XLOC_006524	NA	ENST00000411946	THC2701699	NA	"BROAD Institute lincRNA (XLOC_006524), lincRNA [TCONS_00013207]"	chr7:93701221-93701162	hs|7q21.3	Agilent_HUMAN_G3V2	ENST00000411946	ENST00000411946	chr7	 93701162	 93701221	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34538_PI429285431	3.6111288	P	3.586794	P	1.01701065917496	0	lncRNA	35999-1_{1..1686}	n341417|AK056119|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3887|NULL|-0.1429990|-0.3315383	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341417|AK056119|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3887|NULL|-0.1429990|-0.3315383	chr8	 10962657	 10964342	-	NA	NA	NA	NA	XKR6	"hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50chr8:10952657-10975184"	NA	inner
CUST_16568_PI429285431	1.2290316	A	0.89526135	A	1.26030267168883	0	lncRNA	18269-1_{1..359}	lnc-C21orf63-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C21orf63-1:1	chr21	 33891926	 33892284	+	lnc-C21orf63-1	lnc-C21orf63-1:1	XLOC_013913	linc-OLIG2-6	C21orf63	NA	chr21:33881926-33887697	inter
CUST_13194_PI429285431	1.3284078	A	0.922824	A	1.32462482374266	0	lncRNA	14822-1_{1..3000}	lnc-VTI1A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VTI1A-2:1	chr10	114612832	114615831	+	lnc-VTI1A-2	lnc-VTI1A-2:1	XLOC_008618	linc-TCF7L2-2	NA	NA	NA	inter
CUST_31953_PI429285431	1.0931897	A	0.8924977	A	1.14924946934168	0	lncRNA	33677-2_{3001..3163}	n338510|BC047554|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|907|NULL|-0.4133340|-0.3930993	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338510|BC047554|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|907|NULL|-0.4133340|-0.3930993	chr19	 35417101	 35417263	-	NA	NA	NA	NA	ZNF30	NA	chr19:35417807-35427732	inter
CUST_9376_PI429285431	10.746798	P	10.553058	P	1.14372483452185	0	lncRNA	10878-1_{1..1017}	lnc-ZNF583-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF583-1:4	chr19	 56910263	 56911279	+	lnc-ZNF583-1	lnc-ZNF583-1:4	XLOC_013167	linc-ZNF583-1	ZNF583	NA	chr19:56915383-56920523	inter
CUST_43148_PI429285431	0.90251917	A	0.8868702	A	1.01090608185178	0	lncRNA	47963-1_{1..573}	ENST00000596220 havana:sense_intronic chromosome:GRCh37:1:146138288:146147524:-1 gene:ENSG00000227733 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000596220 havana:sense_intronic chromosome:GRCh37:1:146138288:146147524:-1 gene:ENSG00000227733 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr1	146138288	146138860	-	ENSG00000227733	ENST00000596220	NA	NA	NA	NA	NA	inter
LNCA_21_P0014279	10.320538	P	10.70997	P	0.76343011355672	0	lncRNA	XR_109102	XR_109102	XR_109102	NA	Hs.535392	LOC100293704	uncharacterized LOC100293704	NA	THC2546362	NA	"PREDICTED: Homo sapiens hypothetical LOC100293704 (LOC100293704), miscRNA [XR_109102]"	chr12:123850245-123850304	hs|12q24.31	Agilent_HUMAN_G3V2	XR_109102	XR_109102	chr12	123850245	123850304	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14978_PI429285431	1.1100914	A	0.9133914	A	1.1460738415925	0	lncRNA	16641-1_{1..254}	lnc-CNTNAP5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CNTNAP5-2:1	chr2	126474463	126474716	+	lnc-CNTNAP5-2	lnc-CNTNAP5-2:1	XLOC_001656	linc-GYPC-3	NA	NA	NA	inter
LNCA_21_P0009570	0.90045744	A	0.8831888	A	1.01204163277833	0	lncRNA	THC2717186	NA	NA	NA	NA	XLOC_012875	NA	NA	THC2717186	NA	"BROAD Institute lincRNA (XLOC_012875), lincRNA [TCONS_00026550]"	NA	NA	Agilent_HUMAN_G3V2	THC2717186	THC2717186	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002976	8.634875	P	8.411718	P	1.16728512366842	0	lncRNA	TCONS_00006093	NA	NA	NA	NA	XLOC_002702	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002702), lincRNA [TCONS_00006093]"	chr3:72045494-72045553	hs|3p13	Agilent_HUMAN_G3V2	TCONS_00006093	TCONS_00006093	chr3	 72045494	 72045553	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002589	0.9021526	A	0.8845432	A	1.0122807020397	0	lncRNA	TCONS_00004755	NA	NA	NA	NA	XLOC_001435	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001435), lincRNA [TCONS_00004755]"	chr2:38636267-38636326	hs|2p22.1	Agilent_HUMAN_G3V2	TCONS_00004755	TCONS_00004755	chr2	 38636267	 38636326	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001007	0.9027619	A	0.8851993	A	1.01224786490702	0	lncRNA	ENST00000420059	NA	NA	NA	NA	XLOC_000370	NA	ENST00000420059	THC2674164	NA	"BROAD Institute lincRNA (XLOC_000370), lincRNA [TCONS_00000287]"	chr1:119873344-119873403	hs|1p12	Agilent_HUMAN_G3V2	ENST00000420059	ENST00000420059	chr1	119873344	119873403	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33148_PI429285431	0.904312	A	0.8969425	A	1.00512121697892	0	lncRNA	34744-1_{1..1011}	n339838|AK001398|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2286|NULL|-1.0741800|-0.3969317	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339838|AK001398|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2286|NULL|-1.0741800|-0.3969317	chr18	 33954220	 33955230	+	NA	NA	NA	NA	FHOD3	NA	chr18:33944220-33965232	inner
LNCA_33_P3259933	0.9048293	A	0.88791764	A	1.01179124449932	0	lncRNA	XR_110099	XR_110099	XR_110099	100130547	Hs.495540	LOC100130547	uncharacterized LOC100130547	NA	THC2480486	NA	"PREDICTED: Homo sapiens hypothetical LOC100130547 (LOC100130547), miscRNA [XR_110099]"	chr9:140121994-140121935	hs|9q34.3	Agilent_HUMAN_G3V2	XR_110099	XR_110099	chr9	140121935	140121994	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010667	0.9692576	A	1.732397	A	0.589212768638204	0	lncRNA	TCONS_l2_00001737	NA	NA	NA	NA	XLOC_l2_001288	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001288), lincRNA [TCONS_l2_00001737]"	chr1:208844727-208844668	hs|1q32.2	Agilent_HUMAN_G3V2	TCONS_l2_00001737	TCONS_l2_00001737	chr1	208844668	208844727	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40560_PI429285431	1.770544	A	1.834474	A	0.956654574135263	0	lncRNA	41317-1_{1..1130}	n409753|NR_034156|lncRNA|Homosapiens||RefGeneNoncode|NR_034156||1.7803300|-0.1971670	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409753|NR_034156|lncRNA|Homosapiens||RefGeneNoncode|NR_034156||1.7803300|-0.1971670	chr19	 40170013	 40171142	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_24038_PI429285431	1.286439	A	0.9687429	A	1.24633862859493	0	lncRNA	25590-1_{1..535}	lnc-LIN54-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LIN54-1:7	chr4	 83821230	 83821764	-	lnc-LIN54-1	lnc-LIN54-1:7	ENSG00000251022.1	RP11-163O17.1	SEC31A	NA	chr4:83811230-83812419	inter
LNCA_21_P0001010	3.511821	P	2.5939972	A	1.88926332738729	0	lncRNA	TCONS_00000293	NA	NA	NA	NA	XLOC_000377	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000377), lincRNA [TCONS_00000293]"	chr1:142621453-142621512	hs|1q21.1	Agilent_HUMAN_G3V2	TCONS_00000293	TCONS_00000293	chr1	142621453	142621512	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008100	0.92559105	A	1.3074032	A	0.76747297238375	0	lncRNA	TCONS_00021868	NA	NA	NA	NA	XLOC_010465	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010465), lincRNA [TCONS_00021868]"	chr13:88507240-88507299	hs|13q31.2	Agilent_HUMAN_G3V2	TCONS_00021868	TCONS_00021868	chr13	 88507240	 88507299	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005141	4.8423862	P	5.23594	P	0.761252095792173	0	lncRNA	TCONS_00012619	NA	NA	NA	NA	XLOC_005514	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005514), lincRNA [TCONS_00012619]"	chr6:156636298-156636357	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_00012619	TCONS_00012619	chr6	156636298	156636357	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004780	0.9208329	A	0.9454893	A	0.98305470025432	0	lncRNA	ENST00000455535	NA	NA	NA	NA	XLOC_005855	NA	ENST00000455535	NA	NA	"BROAD Institute lincRNA (XLOC_005855), lincRNA [TCONS_00011574]"	chr6:139629066-139629007	hs|6q24.1	Agilent_HUMAN_G3V2	ENST00000455535	ENST00000455535	chr6	139629007	139629066	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44675_PI429285431	2.0703135	A	1.8276284	A	1.18319273566468	0	lncRNA	49235-1_{1..1458}	"gi|336285271|ref|NR_038459.1| Homo sapiens glucose-fructose oxidoreductase domain containing 1 (GFOD1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336285271|ref|NR_038459.1| Homo sapiens glucose-fructose oxidoreductase domain containing 1 (GFOD1), transcript variant 5, non-coding RNA"	Chr6	 13469500	 13470957	-	54438	NR_038459.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0013319	0.9022076	A	0.9061073	A	0.997300583933568	0	lncRNA	TCONS_l2_00026646	NA	NA	NA	NA	XLOC_l2_013873	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013873), lincRNA [TCONS_l2_00026646]"	chr7:65837714-65837655	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00026646	TCONS_l2_00026646	chr7	 65837655	 65837714	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31416_PI429285431	3.8319745	P	4.2379704	P	0.754715129084754	0	lncRNA	33188-1_{1..554}	n337881|CR603722|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|264|NULL|-0.7312170|-0.1245719	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337881|CR603722|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|264|NULL|-0.7312170|-0.1245719	chr15	 66311734	 66312287	-	NA	NA	NA	NA	MEGF11	NA	chr15:66301734-66322472	inner
LNCA_21_P0012689	7.9775867	P	8.246908	P	0.829709781849088	0	lncRNA	TCONS_l2_00021340	NA	NA	NA	NA	XLOC_l2_011302	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011302), lincRNA [TCONS_l2_00021340]"	chr4:147034272-147033083	hs|4q31.22	Agilent_HUMAN_G3V2	TCONS_l2_00021340	TCONS_l2_00021340	chr4	147033083	147034272	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12150_PI429285431	1.3027096	A	1.5275953	A	0.85566281435778	0	lncRNA	13750-1_{1..605}	lnc-PCDH7-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH7-6:1	chr4	 32229629	 32230233	+	lnc-PCDH7-6	lnc-PCDH7-6:1	XLOC_003498	linc-DTHD1-8	NA	NA	NA	inter
CUST_37947_PI429285431	4.378291	P	4.450135	P	0.951421148852195	0	lncRNA	39037-1_{1..670}	n346494|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2044|NULL|-1.3462000|-0.2774499	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346494|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2044|NULL|-1.3462000|-0.2774499	chr2	243030886	243031555	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31781_PI429285431	2.664109	A	4.133016	P	0.361255886255718	0	lncRNA	33521-1_{1..1488}	n338323|BC052627|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|717|NULL|6.8080100|-0.1015015	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338323|BC052627|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|717|NULL|6.8080100|-0.1015015	chr19	 14272219	 14273706	-	NA	NA	NA	NA	LPHN1	NA	chr19:14262219-14304451	inner
LNCA_21_P0013317	3.9029777	P	4.3053217	P	0.756627962612659	0	lncRNA	TCONS_l2_00026623	NA	NA	NA	NA	XLOC_l2_013868	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013868), lincRNA [TCONS_l2_00026623]"	chr7:64539014-64538955	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00026623	TCONS_l2_00026623	chr7	 64538955	 64539014	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001756	1.3635627	A	0.9307411	A	1.34987105318004	0	lncRNA	TCONS_00002581	NA	NA	NA	NA	XLOC_001195	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001195), lincRNA [TCONS_00002581]"	chr1:212809037-212808978	hs|1q32.3	Agilent_HUMAN_G3V2	TCONS_00002581	TCONS_00002581	chr1	212808978	212809037	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29_PI429285431	1.4426414	A	1.6734462	A	0.852159386425308	0	lncRNA	28-1_{1..552}	"transcript_id ""ENST00000522767.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,"	">transcript_id ""ENST00000522767.1"" | genecode_v17"	chr8	 97384320	 97384871	-	ENSG00000253105.1	ENST00000522767.1	KB-1448A5.1	KB-1448A5.1-001	NA	NA	NA	inter
LNCA_21_P0006494	4.059859	P	4.4456644	P	0.765351613504626	0	lncRNA	TCONS_00017159	NA	NA	NA	NA	XLOC_007967	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007967), lincRNA [TCONS_00017159]"	chrX:45993778-45993837	hs|Xp11.3	Agilent_HUMAN_G3V2	TCONS_00017159	TCONS_00017159	chrX	 45993778	 45993837	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009940	4.0107455	P	3.8221307	P	1.1396689401248	0	lncRNA	TCONS_00028114	NA	NA	NA	NA	XLOC_013468	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013468), lincRNA [TCONS_00028114]"	chr20:17133097-17133156	hs|20p12.1	Agilent_HUMAN_G3V2	TCONS_00028114	TCONS_00028114	chr20	 17133097	 17133156	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006174	8.702142	P	8.61065	P	1.0654714974968	0	lncRNA	TCONS_00016048	NA	NA	NA	NA	XLOC_007440	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007440), lincRNA [TCONS_00016048]"	chr9:90491148-90491207	hs|9q22.1	Agilent_HUMAN_G3V2	TCONS_00016048	TCONS_00016048	chr9	 90491148	 90491207	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007652	0.9675436	A	2.1322746	A	0.446047420438566	0	lncRNA	TCONS_00020616	NA	NA	NA	NA	XLOC_009933	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009933), lincRNA [TCONS_00020616]"	chr12:125774626-125774685	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00020616	TCONS_00020616	chr12	125774626	125774685	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42863_PI429285431	7.8023496	P	7.855936	P	0.963538086993751	0	lncRNA	45914-1_{1..132}	ENST00000384662 ncrna:snoRNA chromosome:GRCh37:6:160201282:160201413:-1 gene:ENSG00000207392 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384662 ncrna:snoRNA chromosome:GRCh37:6:160201282:160201413:-1 gene:ENSG00000207392 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	160201282	160201413	-	ENSG00000207392	ENST00000384662	NA	NA	ACAT2	NA	chr6:160191282-160200087	inner
CUST_904_PI429285431	1.4379215	A	2.9652543	A	0.346918143660038	0	lncRNA	893-1_{1..652}	"transcript_id ""ENST00000604709.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604709.1"" | genecode_v17"	chr2	 65669290	 65669941	-	ENSG00000234255.4	ENST00000604709.1	AC012370.3	AC012370.3-007	SPRED2	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30chr2:65659290-65659656"	NA	inter
LNCA_21_P0004101	0.951604	A	1.0043172	A	0.964121450840352	0	lncRNA	ENST00000503953	NA	NA	NA	NA	XLOC_004735	NA	ENST00000503953	NA	NA	"BROAD Institute lincRNA (XLOC_004735), lincRNA [TCONS_00009605]"	chr5:10775250-10775191	hs|5p15.2	Agilent_HUMAN_G3V2	ENST00000503953	ENST00000503953	chr5	 10775191	 10775250	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014891	2.8850448	A	2.9959583	A	0.926001541351361	0	lncRNA	XR_132815	XR_132815	XR_132815	NA	NA	LOC100652907	uncharacterized LOC100652907	NA	THC2530762	NA	"PREDICTED: Homo sapiens hypothetical LOC100652907 (LOC100652907), miscRNA [XR_132815]"	chr9:134073203-134073144	hs|9q34.13	Agilent_HUMAN_G3V2	XR_132815	XR_132815	chr9	134073144	134073203	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3724_PI429285431	5.674219	P	5.9323635	P	0.836162645863462	0	lncRNA	3693-1_{1..417}	"transcript_id ""ENST00000429634.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000429634.1"" | genecode_v17"	chr10	 69993010	 69993426	-	ENSG00000233590.1	ENST00000429634.1	RP11-153K11.3	RP11-153K11.3-002	ATOH7	NA	chr10:69990381-69991855	inter
CUST_2695_PI429285431	4.2318373	P	4.396513	P	0.892129036454718	0	lncRNA	2681-1_{1..413}	"transcript_id ""ENST00000443380.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443380.1"" | genecode_v17"	chr6	161294048	161294460	-	ENSG00000224371.1	ENST00000443380.1	RP11-235G24.1	RP11-235G24.1-002	NA	NA	NA	inter
LNCA_21_P0005797	0.90259904	A	0.90663415	A	0.997206982631235	0	lncRNA	TCONS_00014928	NA	NA	NA	NA	XLOC_006999	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006999), lincRNA [TCONS_00014928]"	chr8:9117582-9116355	hs|8p23.1	Agilent_HUMAN_G3V2	TCONS_00014928	TCONS_00014928	chr8	  9116355	  9117582	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002501	4.5816054	P	5.077576	P	0.709084467789544	0	lncRNA	TCONS_00004436	NA	NA	NA	NA	XLOC_002309	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002309), lincRNA [TCONS_00004436]"	chr2:128168860-128168801	hs|2q14.3	Agilent_HUMAN_G3V2	TCONS_00004436	TCONS_00004436	chr2	128168801	128168860	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20098_PI429285431	2.53199	A	2.519856	A	1.00844611675686	0	lncRNA	21746-1_{1..569}	lnc-SPPL3.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPPL3.1-2:1	chr12	121161382	121161950	-	lnc-SPPL3.1-2	lnc-SPPL3.1-2:1	ENSG00000256569.1	RP11-173P15.5	UNC119B	NA	chr12:121151382-121161443	inner
CUST_22083_PI429285431	0.914298	A	0.90309364	A	1.00779650624525	0	lncRNA	23688-2_{3001..3218}	lnc-C2orf76-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf76-2:1	chr2	120008890	120009107	-	lnc-C2orf76-2	lnc-C2orf76-2:1	ENSG00000229867.1	STEAP3-AS1	STEAP3	"hg19_refFlat_STEAP3:range=chr2:120003073-1200209145'pad=0,hg19_refFlat_STEAP3:range=chr2:120003073-1200209145'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.60;hg19_refFlat_STEAP3:range=chr2:119988589-1200209145'pad=0,hg19_refFlat_STEAP3:range=chr2:119988589-1200209145'pad=0 3'pad=0 strand=+ repeatMasking=none,-99.60;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70chr2:119995890-120016647"	NA	inner
LNCA_21_P0012683	0.8978207	A	0.89655316	A	1.00087897785206	0	lncRNA	TCONS_l2_00021309	NA	NA	NA	NA	XLOC_l2_011283	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011283), lincRNA [TCONS_l2_00021309]"	chr4:139219747-139219688	hs|4q28.3	Agilent_HUMAN_G3V2	TCONS_l2_00021309	TCONS_l2_00021309	chr4	139219688	139219747	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24536_PI429285431	2.9493544	A	2.8763633	A	1.05189529003139	0	lncRNA	26086-1_{1..575}	lnc-TARBP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TARBP1-1:1	chr1	234509169	234509743	-	lnc-TARBP1-1	lnc-TARBP1-1:1	ENSG00000231663.1	RP5-827C21.4	C1orf31	NA	chr1:234509214-234519339	inner
CUST_34635_PI429285431	0.9290154	A	0.95366514	A	0.98305923839941	0	lncRNA	36089-1_{1..885}	n341534|BC022402|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4004|NULL|-0.3608300|-0.2468287	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n341534|BC022402|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4004|NULL|-0.3608300|-0.2468287	chr8	 74964574	 74965458	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15094_PI429285431	4.595589	P	4.8945594	P	0.812832278820348	0	lncRNA	16758-1_{1..406}	lnc-FPGT-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FPGT-4:1	chr1	 73319838	 73320243	+	lnc-FPGT-4	lnc-FPGT-4:1	XLOC_000255	linc-FPGT-3	NA	NA	NA	inter
CUST_17530_PI429285431	0.9261447	A	0.9228138	A	1.00231147128395	0	lncRNA	19255-1_{1..1834}	lnc-HS1BP3-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HS1BP3-1:9	chr2	 20739648	 20741481	-	lnc-HS1BP3-1	lnc-HS1BP3-1:9	XLOC_002010	linc-PUM2-2	HS1BP3	NA	chr2:20729648-20749656	inter
CUST_43463_PI429285431	8.453464	P	6.881622	P	2.97284037371733	0	lncRNA	48267-1_{1..2879}	"gi|378925603|ref|NR_046394.1| Homo sapiens cytidine monophosphate (UMP-CMP) kinase 1, cytosolic (CMPK1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|378925603|ref|NR_046394.1| Homo sapiens cytidine monophosphate (UMP-CMP) kinase 1, cytosolic (CMPK1), transcript variant 3, non-coding RNA"	Chr1	 47799469	 47802347	+	51727	NR_046394.1	NA	NA	NA	NA	NA	inter
CUST_46969_PI429285431	6.2989917	P	5.892491	P	1.32546695218932	0	lncRNA	51073-1_{1..3000}	"gi|391224434|ref|NR_052003.1| Homo sapiens protein phosphatase 4, regulatory subunit 1 (PPP4R1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|391224434|ref|NR_052003.1| Homo sapiens protein phosphatase 4, regulatory subunit 1 (PPP4R1), transcript variant 3, non-coding RNA"	Chr18	  9546789	  9549788	-	9989	NR_052003.1	NA	NA	NA	NA	NA	inter
CUST_10729_PI429285431	0.92087346	A	0.9238269	A	0.997954925411522	0	lncRNA	12267-1_{1..1753}	lnc-FOXO3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>lnc-FOXO3-1:1	chr6	109090999	109092751	+	lnc-FOXO3-1	lnc-FOXO3-1:1	XLOC_005421	linc-ARMC2	NA	NA	NA	inter
CUST_25614_PI429285431	3.5143955	P	3.9567087	P	0.735953642843097	0	lncRNA	27143-1_{1..528}	lnc-ANKH-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANKH-1:2	chr5	 14664543	 14665070	-	lnc-ANKH-1	lnc-ANKH-1:2	ENSG00000261360.1	CTD-2165H16.4	FAM105B	NA	chr5:14654543-14674682	inter
CUST_14571_PI429285431	0.9261631	A	1.0495634	A	0.918021406482391	0	lncRNA	16237-1_{1..359}	lnc-FAM198A-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM198A-2:1	chr3	 43168167	 43168525	+	lnc-FAM198A-2	lnc-FAM198A-2:1	XLOC_002628	linc-SNRK	NA	NA	NA	inter
CUST_43410_PI429285431	4.705164	P	4.959495	P	0.838375812371721	0	lncRNA	48222-1_{1..926}	"gi|410170385|ref|XR_171095.1| PREDICTED: Homo sapiens uncharacterized LOC101059975, transcript variant 1 (LOC101059975), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170385|ref|XR_171095.1| PREDICTED: Homo sapiens uncharacterized LOC101059975, transcript variant 1 (LOC101059975), misc_RNA"	NA	NA	NA	NA	NA	XR_171095.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005450	0.9144089	A	0.9245688	A	0.992982432890304	0	lncRNA	TCONS_00013651	NA	NA	NA	NA	XLOC_006307	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006307), lincRNA [TCONS_00013651]"	chr7:156002383-156002442	hs|7q36.3	Agilent_HUMAN_G3V2	TCONS_00013651	TCONS_00013651	chr7	156002383	156002442	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008944	1.4657016	A	0.91797066	A	1.46178480277101	0	lncRNA	TCONS_00024413	NA	NA	NA	NA	XLOC_011724	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011724), lincRNA [TCONS_00024413]"	chr16:52314447-52314506	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00024413	TCONS_00024413	chr16	 52314447	 52314506	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37451_PI429285431	9.021139	P	8.883152	P	1.10036869399451	0	lncRNA	38550-1_{1..673}	n345901|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1450|NULL|-1.3616500|-0.3405044	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345901|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1450|NULL|-1.3616500|-0.3405044	chr3	183867474	183868146	-	NA	NA	NA	NA	DVL3	"hg19_refFlat_RPS3:range=chr11:75110592-751159095'pad=0,hg19_refFlat_RPS3:range=chr11:75110592-751159095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.60;hg19_refFlat_RPS3:range=chr11:75115092-751159095'pad=0,hg19_refFlat_RPS3:range=chr11:75115092-751159095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00chr3:183867462-183878290"	NA	inter
CUST_24940_PI429285431	6.0639	P	6.6284075	P	0.67618621017655	0	lncRNA	26480-1_{1..723}	lnc-STOML1-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-STOML1-1:13	chr15	 74212179	 74212901	-	lnc-STOML1-1	lnc-STOML1-1:13	ENSG00000261801.1	RP11-941F15.1	LOXL1	NA	chr15:74218789-74222211	inter
CUST_1172_PI429285431	3.7818723	P	3.8637276	P	0.944841802363141	0	lncRNA	1161-1_{1..558}	"transcript_id ""ENST00000457756.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457756.1"" | genecode_v17"	chr2	177710784	177711341	-	ENSG00000227098.1	ENST00000457756.1	AC073636.1	AC073636.1-002	NA	NA	NA	inter
LNCA_21_P0008963	0.8970302	A	0.8942194	A	1.00195019726103	0	lncRNA	TCONS_00024445	NA	NA	NA	NA	XLOC_011768	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011768), lincRNA [TCONS_00024445]"	chr16:68648121-68648180	hs|16q22.1	Agilent_HUMAN_G3V2	TCONS_00024445	TCONS_00024445	chr16	 68648121	 68648180	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013114	0.8961827	A	0.8910744	A	1.00354707979326	0	lncRNA	AK125910	NA	AK125910	NA	NA	LPAL2	"lipoprotein, Lp(a)-like 2, pseudogene"	NA	NA	GO:0008150|GO:0003674|GO:0005576|GO:0005575	"BROAD Institute lincRNA (XLOC_l2_013192), lincRNA [TCONS_l2_00025015]"	chr6:160901199-160899678	hs|6q25.3	Agilent_HUMAN_G3V2	AK125910	AK125910	chr6	160899678	160901199	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48076_PI429285431	1.5247099	A	2.6755686	A	0.450357096502106	0	lncRNA	51952-1_{1..2518}	"gi|310114604|ref|XR_112629.1| PREDICTED: Homo sapiens uncharacterized LOC100508631 (LOC100508631), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310114604|ref|XR_112629.1| PREDICTED: Homo sapiens uncharacterized LOC100508631 (LOC100508631), misc_RNA"	NA	NA	NA	NA	NA	XR_112629.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005794	5.869114	P	6.07722	P	0.865672959073278	0	lncRNA	ENST00000519726	NA	NA	NA	NA	XLOC_006994	NA	ENST00000519726	NA	NA	"BROAD Institute lincRNA (XLOC_006994), lincRNA [TCONS_00014924]"	chr8:8085049-8084990	hs|8p23.1	Agilent_HUMAN_G3V2	ENST00000519726	ENST00000519726	chr8	  8084990	  8085049	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004938	0.8960349	A	0.88518345	A	1.00755001065347	0	lncRNA	TCONS_00011947	NA	NA	NA	NA	XLOC_005460	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005460), lincRNA [TCONS_00011947]"	chr6:127198539-127198598	hs|6q22.33	Agilent_HUMAN_G3V2	TCONS_00011947	TCONS_00011947	chr6	127198539	127198598	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20722_PI429285431	5.187508	P	5.4326563	P	0.843729061617495	0	lncRNA	22357-1_{1..695}	lnc-ZIC5-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZIC5-5:1	chr13	100342807	100343501	-	lnc-ZIC5-5	lnc-ZIC5-5:1	ENSG00000227659.1	CLYBL-AS2	CLYBL	NA	chr13:100332807-100353225	inner
CUST_47726_PI429285431	1.368566	A	1.631506	A	0.833387866065482	0	lncRNA	51682-3_{6001..6284}	"gi|385137071|ref|NR_047609.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 39, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137071|ref|NR_047609.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 39, non-coding RNA"	ChrY	 15366259	 15366542	-	7404	NR_047609.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0014858	0.9006467	A	2.6299155	A	0.301604780306817	0	lncRNA	ENST00000449314	XR_132745	XR_132745	NA	Hs.722671	LOC100652996	NA	ENST00000449314	THC2608173	NA	"PREDICTED: Homo sapiens hypothetical LOC100652996 (LOC100652996), miscRNA [XR_132745]"	chr6:116691377-116691436	hs|6q22.1	Agilent_HUMAN_G3V2	ENST00000449314	ENST00000449314	chr6	116691377	116691436	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008861	2.8445084	A	1.3228397	A	2.87122959734367	0	lncRNA	THC2712170	NA	NA	NA	NA	XLOC_011544	NA	NA	THC2712170	NA	"BROAD Institute lincRNA (XLOC_011544), lincRNA [TCONS_00024184]"	NA	NA	Agilent_HUMAN_G3V2	THC2712170	THC2712170	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007756	0.90387815	A	0.886139	A	1.01237174645573	0	lncRNA	TCONS_00020911	NA	NA	NA	NA	XLOC_010191	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010191), lincRNA [TCONS_00020911]"	chr12:108240086-108240027	hs|12q23.3	Agilent_HUMAN_G3V2	TCONS_00020911	TCONS_00020911	chr12	108240027	108240086	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010211	2.485008	A	3.146047	P	0.632422674828124	0	lncRNA	XR_109690	XR_109690	XR_109690	NA	NA	LOC100505974	uncharacterized LOC100505974	NA	THC2604008	NA	"PREDICTED: Homo sapiens hypothetical LOC100505974 (LOC100505974), miscRNA [XR_109690]"	chr21:44778086-44778027	hs|21q22.3	Agilent_HUMAN_G3V2	XR_109690	XR_109690	chr21	 44778027	 44778086	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002498	4.355549	P	3.6187782	P	1.66644164681306	0	lncRNA	TCONS_00004430	NA	NA	NA	NA	XLOC_002300	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002300), lincRNA [TCONS_00004430]"	chr2:121895906-121895847	hs|2q14.2	Agilent_HUMAN_G3V2	TCONS_00004430	TCONS_00004430	chr2	121895847	121895906	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8824_PI429285431	0.9137366	A	1.2078073	A	0.815597523590586	0	lncRNA	10364-1_{1..245}	lnc-ABLIM3-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ABLIM3-1:6	chr5	148468857	148469101	+	lnc-ABLIM3-1	lnc-ABLIM3-1:6	ENSG00000250072	CTC-529P8.1	NA	NA	NA	inter
CUST_17301_PI429285431	5.3657804	P	5.574252	P	0.86545361269261	0	lncRNA	19019-1_{1..503}	lnc-RP11-44L9.1.1-8:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-44L9.1.1-8:1	chr16	 73808865	 73809367	+	lnc-RP11-44L9.1.1-8	lnc-RP11-44L9.1.1-8:1	XLOC_011786	linc-PSMD7-4	NA	NA	NA	inter
LNCA_21_P0013106	0.9709805	A	0.98192143	A	0.992445008724801	0	lncRNA	TCONS_l2_00024960	NA	NA	NA	NA	XLOC_l2_013151	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013151), lincRNA [TCONS_l2_00024960]"	chr6:144589111-144551481	hs|6q24.2	Agilent_HUMAN_G3V2	TCONS_l2_00024960	TCONS_l2_00024960	chr6	144551481	144589111	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003615	0.976243	A	0.99719054	A	0.985585174629782	0	lncRNA	TCONS_00008091	NA	NA	NA	NA	XLOC_003555	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003555), lincRNA [TCONS_00008091]"	chr4:63013758-63013817	hs|4q13.1	Agilent_HUMAN_G3V2	TCONS_00008091	TCONS_00008091	chr4	 63013758	 63013817	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13285_PI429285431	0.9261193	A	1.3583039	A	0.741138666458537	0	lncRNA	14917-1_{1..818}	lnc-LAMA1-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LAMA1-4:1	chr18	  7509140	  7509957	-	lnc-LAMA1-4	lnc-LAMA1-4:1	XLOC_012749	linc-LAMA1-7	NA	NA	NA	inter
LNCA_21_P0007022	0.9749719	A	1.0060558	A	0.978684733284363	0	lncRNA	TCONS_00018616	NA	NA	NA	NA	XLOC_008963	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008963), lincRNA [TCONS_00018616]"	chr10:119589988-119586602	hs|10q26.11	Agilent_HUMAN_G3V2	TCONS_00018616	TCONS_00018616	chr10	119586602	119589988	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001716	5.3281054	P	5.415099	P	0.941482641082587	0	lncRNA	TCONS_00002269	NA	NA	NA	NA	XLOC_000633	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000633), lincRNA [TCONS_00002269]"	chr1:237076652-237076711	hs|1q43	Agilent_HUMAN_G3V2	TCONS_00002269	TCONS_00002269	chr1	237076652	237076711	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30384_PI429285431	0.9321398	A	1.0891716	A	0.896868390599018	0	lncRNA	32162-1_{1..212}	n335499|BC055094|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259495_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259495_08|-1.5223100|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335499|BC055094|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259495_08|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259495_08|-1.5223100|-1.0000000	chr6	  2892876	  2893087	-	NA	NA	NA	NA	SERPINB9	NA	chr6:2887504-2903088	inner
CUST_32428_PI429285431	8.337429	P	8.965861	P	0.646879097031207	0	lncRNA	34103-1_{1..1676}	n339022|S77094|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1451|NULL|8.8449000|-0.1223673	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339022|S77094|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1451|NULL|8.8449000|-0.1223673	chr2	175612599	175614274	-	NA	NA	NA	NA	CHRNA1	NA	chr2:175612320-175629200	inner
CUST_19845_PI429285431	0.91296536	A	0.9191682	A	0.995709748479073	0	lncRNA	21502-1_{1..536}	lnc-GNRHR2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNRHR2-1:3	chr1	145507624	145508159	-	lnc-GNRHR2-1	lnc-GNRHR2-1:3	ENSG00000234222.1	RP11-315I20.1	LIX1L	"hg19_refFlat_RBM8A:range=chr1:145507667-1455092115'pad=0,hg19_refFlat_RBM8A:range=chr1:145507667-1455092115'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90chr1:145497624-145499091"	NA	inner
CUST_22894_PI429285431	1.691053	A	1.5391424	A	1.11103987831605	0	lncRNA	24471-1_{1..422}	lnc-SLC1A2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC1A2-2:2	chr11	 35159245	 35159666	-	lnc-SLC1A2-2	lnc-SLC1A2-2:2	ENSG00000255521.1	RP4-607I7.1	CD44	NA	chr11:35160417-35169273	inter
CUST_23793_PI429285431	8.92787	P	9.086199	P	0.89606233335459	0	lncRNA	25358-1_{1..462}	lnc-USP6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP6-1:1	chr17	  5017453	  5017914	+	lnc-USP6-1	lnc-USP6-1:1	ENSG00000234327.2	AC012146.7	ZNF232	"hg19_refFlat_ZNF527:range=chr19:37865101-378807815'pad=0,hg19_refFlat_ZNF527:range=chr19:37865101-378807815'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60chr17:5009031-5026397"	NA	inner
CUST_38365_PI429285431	0.92893386	A	0.9854414	A	0.96158910818178	0	lncRNA	39406-2_{3001..3566}	n382152|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001wug.2||7.7536600|-0.2277774	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n382152|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001wug.2||7.7536600|-0.2277774	chr14	 38083455	 38084020	+	NA	NA	NA	NA	TTC6	NA	chr14:38149377-38276038	inter
LNCA_21_P0011042	0.9099294	A	0.9175702	A	0.994717801157842	0	lncRNA	TCONS_l2_00005549	NA	NA	NA	NA	XLOC_l2_002913	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002913), lincRNA [TCONS_l2_00005549]"	chr12:19201438-19201497	hs|12p12.3	Agilent_HUMAN_G3V2	TCONS_l2_00005549	TCONS_l2_00005549	chr12	 19201438	 19201497	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8843_PI429285431	6.4924498	P	6.853991	P	0.778332659383346	0	lncRNA	10382-1_{1..687}	lnc-EVX1-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EVX1-8:2	chr7	 27191913	 27192599	+	lnc-EVX1-8	lnc-EVX1-8:2	ENSG00000254369	RP1-170O19.2	HOXA5	NA	chr7:27181913-27183287	inter
CUST_32181_PI429285431	10.245229	P	10.2362	P	1.0062780507595	0	lncRNA	33880-1_{1..1310}	n338753|CR592082|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1174|NULL|-0.9978780|-0.0631946	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338753|CR592082|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1174|NULL|-0.9978780|-0.0631946	chr2	 32581786	 32583095	-	NA	NA	NA	NA	BIRC6	"hg19_refFlat_BIRC6:range=chr2:32582230-328429715'pad=0,hg19_refFlat_BIRC6:range=chr2:32582230-328429715'pad=0 3'pad=0 strand=+ repeatMasking=none,-113.70chr2:32582096-32593096"	NA	inner
CUST_44822_PI429285431	7.5410304	P	7.6683173	P	0.915551598127977	0	lncRNA	49355-1_{1..3000}	"gi|333470699|ref|NR_038245.1| Homo sapiens uncharacterized LOC100507557 (LOC100507557), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|333470699|ref|NR_038245.1| Homo sapiens uncharacterized LOC100507557 (LOC100507557), transcript variant 2, non-coding RNA"	Chr6	146136012	146139011	+	100507557	NR_038245.1	NA	NA	NA	NA	NA	inter
CUST_44185_PI429285431	0.90400046	A	0.8919601	A	1.00838066437282	0	lncRNA	48841-1_{1..2690}	"gi|333944045|ref|NR_038281.1| Homo sapiens uncharacterized LOC100506994 (LOC100506994), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|333944045|ref|NR_038281.1| Homo sapiens uncharacterized LOC100506994 (LOC100506994), transcript variant 1, non-coding RNA"	Chr3	 62247494	 62250183	-	100506994	NR_038281.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PTPRG:range=chr3:61547962-622789825'pad=0,hg19_refFlat_PTPRG:range=chr3:61547962-622789825'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30"	NA	inter
CUST_25208_PI429285431	7.5527005	P	8.26734	P	0.609357378767936	0	lncRNA	26739-1_{1..729}	lnc-C15orf57-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C15orf57-1:1	chr15	 40758750	 40759478	-	lnc-C15orf57-1	lnc-C15orf57-1:1	ENSG00000259211.1	RP11-64K12.8	CHST14	"hg19_refFlat_BAHD1:range=chr15:40750664-407583295'pad=0,hg19_refFlat_BAHD1:range=chr15:40750664-407583295'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70chr15:40763160-40765357"	NA	inner
CUST_43874_PI429285431	0.90573394	A	0.898526	A	1.00500866492385	0	lncRNA	48593-1_{1..921}	"gi|310118946|ref|XR_109949.1| PREDICTED: Homo sapiens uncharacterized LOC100507201 (LOC100507201), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|310118946|ref|XR_109949.1| PREDICTED: Homo sapiens uncharacterized LOC100507201 (LOC100507201), misc_RNA"	Chr2	 81688483	 81689403	-	100507201	XR_109949.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0014923	3.241779	P	3.0453346	P	1.14587081148732	0	lncRNA	XR_133207	XR_133207	XR_133207	NA	Hs.690891	LOC100505703	uncharacterized LOC100505703	NA	THC2627843	NA	"PREDICTED: Homo sapiens hypothetical LOC100505703 (LOC100505703), miscRNA [XR_133207]"	chr1:161391989-161392048	hs|1q23.3	Agilent_HUMAN_G3V2	XR_133207	XR_133207	chr1	161391989	161392048	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18454_PI429285431	0.9383051	A	0.9059033	A	1.02271332329594	0	lncRNA	20177-1_{1..861}	lnc-C11orf89-2:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C11orf89-2:12	chr11	  2017748	  2018608	-	lnc-C11orf89-2	lnc-C11orf89-2:12	ENSG00000130600	H19	NA	NA	NA	inter
CUST_34063_PI429285431	4.129169	P	4.4051676	P	0.825878466372793	0	lncRNA	35592-2_{3001..3434}	n340882|BC044837|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3347|NULL|-0.3108060|-0.0905161	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340882|BC044837|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3347|NULL|-0.3108060|-0.0905161	chr17	 75372899	 75373332	-	NA	NA	NA	NA	9-Sep	NA	chr17:75359899-75383318	inner
CUST_13021_PI429285431	4.193302	P	4.6314774	P	0.738067464608799	0	lncRNA	14649-1_{1..1023}	lnc-MX1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MX1-3:1	chr21	 43137186	 43138208	+	lnc-MX1-3	lnc-MX1-3:1	XLOC_013949	linc-UMODL1-3	NA	NA	NA	inter
LNCA_21_P0011248	0.9005226	A	0.8897503	A	1.00749473535721	0	lncRNA	XR_110295	XR_110295	XR_110295	NA	Hs.666245	LRRC9	leucine rich repeat containing 9	NA	THC2483068	NA	"PREDICTED: Homo sapiens leucine rich repeat containing 9 (LRRC9), miscRNA [XR_110295]"	chr14:60386586-60394672	hs|14q23.1	Agilent_HUMAN_G3V2	XR_110295	XR_110295	chr14	 60386586	 60394672	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7568_PI429285431	0.90364474	A	0.8941029	A	1.00663581962581	0	lncRNA	9203-2_{3001..3576}	lnc-SOX2-1:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SOX2-1:9	chr3	181460357	181460932	+	lnc-SOX2-1	lnc-SOX2-1:9	ENSG00000242808	RP11-4B14.2	NA	NA	NA	inter
LNCA_21_P0014767	2.4820397	A	3.3368762	P	0.552927986197089	0	lncRNA	XR_132534	XR_132534	XR_132534	NA	NA	FLJ40288	uncharacterized FLJ40288	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical FLJ40288 (FLJ40288), miscRNA [XR_132534]"	chr7:132356994-132357053	hs|7q32.3	Agilent_HUMAN_G3V2	XR_132534	XR_132534	chr7	132356994	132357053	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005041	0.9752021	A	1.0068631	A	0.978293322768252	0	lncRNA	TCONS_00012225	NA	NA	NA	NA	XLOC_005783	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005783), lincRNA [TCONS_00012225]"	chr6:93299544-93299040	hs|6q16.1	Agilent_HUMAN_G3V2	TCONS_00012225	TCONS_00012225	chr6	 93299040	 93299544	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48032_PI429285431	0.9169693	A	1.9022331	A	0.505133350040718	0	lncRNA	51913-1_{1..1683}	"gi|410173749|ref|XR_172371.1| PREDICTED: Homo sapiens uncharacterized LOC100507599 (LOC100507599), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|410173749|ref|XR_172371.1| PREDICTED: Homo sapiens uncharacterized LOC100507599 (LOC100507599), misc_RNA"	NA	NA	NA	NA	NA	XR_172371.1	NA	NA	NA	NA	NA	Unknown
CUST_46207_PI429285431	1.3139148	A	0.93097806	A	1.30399355585572	0	lncRNA	50449-1_{1..1203}	"gi|327315393|ref|NR_002163.3| Homo sapiens olfactory receptor, family 7, subfamily E, member 37 pseudogene (OR7E37P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|327315393|ref|NR_002163.3| Homo sapiens olfactory receptor, family 7, subfamily E, member 37 pseudogene (OR7E37P), non-coding RNA"	Chr13	 42016700	 42017902	+	100506759	NR_002163.3	NA	NA	NA	NA	NA	inter
LNCA_21_P0002939	1.7204934	A	1.9571972	A	0.848682126913048	0	lncRNA	TCONS_00005968	NA	NA	NA	NA	XLOC_002601	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002601), lincRNA [TCONS_00005968]"	chr3:26020444-26020503	hs|3p24.2	Agilent_HUMAN_G3V2	TCONS_00005968	TCONS_00005968	chr3	 26020444	 26020503	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27324_PI429285431	0.92122155	A	0.92809737	A	0.995245383896568	0	lncRNA	28884-1_{1..451}	n324479|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041165|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041165|-1.1815500|-0.3755260	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324479|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041165|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041165|-1.1815500|-0.3755260	chr6	 72182807	 72183257	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005409	3.5748937	P	3.4982924	P	1.05453084898987	0	lncRNA	TCONS_00013554	NA	NA	NA	NA	XLOC_006188	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006188), lincRNA [TCONS_00013554]"	chr7:99595380-99595439	hs|7q22.1	Agilent_HUMAN_G3V2	TCONS_00013554	TCONS_00013554	chr7	 99595380	 99595439	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002690	0.89736927	A	0.8943495	A	1.0020953372188	0	lncRNA	TCONS_00005329	NA	NA	NA	NA	XLOC_002473	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002473), lincRNA [TCONS_00005329]"	chr2:208051003-208050944	hs|2q33.3	Agilent_HUMAN_G3V2	TCONS_00005329	TCONS_00005329	chr2	208050944	208051003	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001058	0.897143	A	0.89370185	A	1.00238807032882	0	lncRNA	ENST00000444750	NA	NA	NA	NA	XLOC_000553	NA	ENST00000444750	NA	NA	"BROAD Institute lincRNA (XLOC_000553), lincRNA [TCONS_00000386]"	chr1:212343599-212363403	hs|1q32.3	Agilent_HUMAN_G3V2	ENST00000444750	ENST00000444750	chr1	212343599	212363403	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003806	0.89659375	A	0.8918889	A	1.00326647685875	0	lncRNA	TCONS_00008673	NA	NA	NA	NA	XLOC_004192	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004192), lincRNA [TCONS_00008673]"	chr4:182178960-182178901	hs|4q34.3	Agilent_HUMAN_G3V2	TCONS_00008673	TCONS_00008673	chr4	182178901	182178960	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004147	2.3701596	A	2.3054273	A	1.04589085098592	0	lncRNA	TCONS_00009709	NA	NA	NA	NA	XLOC_004896	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004896), lincRNA [TCONS_00009709]"	chr5:77638753-77638694	hs|5q14.1	Agilent_HUMAN_G3V2	TCONS_00009709	TCONS_00009709	chr5	 77638694	 77638753	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007388	0.8962057	A	0.88602555	A	1.00708129691493	0	lncRNA	TCONS_00019738	NA	NA	NA	NA	XLOC_009531	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009531), lincRNA [TCONS_00019738]"	chr11:97933103-97933044	hs|11q22.1	Agilent_HUMAN_G3V2	TCONS_00019738	TCONS_00019738	chr11	 97933044	 97933103	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007095	1.6787598	A	2.4232223	A	0.596890211457427	0	lncRNA	TCONS_00018874	NA	NA	NA	NA	XLOC_008701	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008701), lincRNA [TCONS_00018874]"	chr10:4264125-4264066	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_00018874	TCONS_00018874	chr10	  4264066	  4264125	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38404_PI429285431	1.4878063	A	0.9469741	A	1.45481146453159	0	lncRNA	39437-1_{1..3000}	n382350|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yxy.2||-0.8366460|-0.3167362	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,"	>n382350|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yxy.2||-0.8366460|-0.3167362	chr15	 25326237	 25329236	+	NA	NA	NA	NA	SNRPN	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20chr15:25316237-25369068"	NA	inter
CUST_21403_PI429285431	0.91508853	A	0.9122821	A	1.0019471623052	0	lncRNA	23024-1_{1..537}	lnc-ZAP70-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-ZAP70-2:5	chr2	 98319132	 98319668	+	lnc-ZAP70-2	lnc-ZAP70-2:5	ENSG00000228486.2	AC017099.3	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.20;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70"	NA	inter
CUST_42371_PI429285431	3.4595697	P	1.6914326	A	3.40613850258779	0	lncRNA	45049-1_{1..135}	ENST00000365473 ncrna:snoRNA chromosome:GRCh37:6:149915761:149915895:1 gene:ENSG00000202343 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000365473 ncrna:snoRNA chromosome:GRCh37:6:149915761:149915895:1 gene:ENSG00000202343 gene_biotype:snoRNA transcript_biotype:snoRNA	chr6	149915761	149915895	+	ENSG00000202343	ENST00000365473	NA	NA	KATNA1	NA	chr6:149916009-149925895	inter
CUST_14835_PI429285431	4.7688637	P	4.8965855	P	0.915275646960096	0	lncRNA	16496-1_{1..682}	lnc-POTEB-5:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POTEB-5:4	chr15	 22542350	 22543031	-	lnc-POTEB-5	lnc-POTEB-5:4	XLOC_011397	linc-POTEB-2	NA	NA	NA	inter
LNCA_21_P0010366	8.262274	P	8.234421	P	1.01949379879568	0	lncRNA	ENST00000426112	XR_109736	XR_109736	NA	Hs.97855	XLOC_014270	NA	ENST00000426112	THC2620628	NA	"PREDICTED: Homo sapiens hypothetical LOC100506813 (LOC100506813), miscRNA [XR_109736]"	chr22:46943846-46943905	hs|22q13.31	Agilent_HUMAN_G3V2	ENST00000426112	ENST00000426112	chr22	 46943846	 46943905	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012124	0.8975632	A	0.8893885	A	1.00568235393003	0	lncRNA	THC2685182	NA	NA	NA	NA	XLOC_l2_008624	NA	NA	THC2685182	NA	"BROAD Institute lincRNA (XLOC_l2_008624), lincRNA [TCONS_l2_00016254]"	chr20:038641182-038641241	hs|20q12	Agilent_HUMAN_G3V2	THC2685182	THC2685182	chr20	 38641182	 38641241	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012168	0.97711074	A	1.0055166	A	0.98050312934463	0	lncRNA	ENST00000427446	NA	NA	NA	NA	XLOC_l2_008977	NA	ENST00000427446	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008977), lincRNA [TCONS_l2_00016967]"	chr21:14919388-14919447	hs|21q11.2	Agilent_HUMAN_G3V2	ENST00000427446	ENST00000427446	chr21	 14919388	 14919447	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010237	2.7943423	A	2.1074789	A	1.60977984778418	0	lncRNA	TCONS_00029005	NA	NA	NA	NA	XLOC_013925	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013925), lincRNA [TCONS_00029005]"	chr21:35734255-35734314	hs|21q22.11	Agilent_HUMAN_G3V2	TCONS_00029005	TCONS_00029005	chr21	 35734255	 35734314	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003100	3.1570828	P	2.8027744	A	1.27837260735042	0	lncRNA	TCONS_00006440	NA	NA	NA	NA	XLOC_003044	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003044), lincRNA [TCONS_00006440]"	chr3:10766667-10766608	hs|3p25.3	Agilent_HUMAN_G3V2	TCONS_00006440	TCONS_00006440	chr3	 10766608	 10766667	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001251	3.8150296	P	3.5963032	P	1.16370582240381	0	lncRNA	TCONS_00000799	NA	NA	NA	NA	XLOC_000015	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000015), lincRNA [TCONS_00000799]"	chr1:1210366-1210425	hs|1p36.33	Agilent_HUMAN_G3V2	TCONS_00000799	TCONS_00000799	chr1	  1210366	  1210425	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011489	3.4153004	P	4.239483	P	0.564802116505291	0	lncRNA	TCONS_l2_00010286	NA	NA	NA	NA	XLOC_l2_005553	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005553), lincRNA [TCONS_l2_00010286]"	chr16:75538584-75538525	hs|16q23.1	Agilent_HUMAN_G3V2	TCONS_l2_00010286	TCONS_l2_00010286	chr16	 75538525	 75538584	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39115_PI429285431	2.9652543	A	1.1302003	A	3.5678476195311	0	lncRNA	40092-1_{1..3000}	n385685|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bnb.1||-1.1638100|-0.3543083	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385685|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004bnb.1||-1.1638100|-0.3543083	chr9	125606834	125609833	-	NA	NA	NA	NA	RC3H2	NA	chr9:125599786-125620773	inter
CUST_34971_PI429285431	1.111737	A	0.922295	A	1.14032258101258	0	lncRNA	36388-1_{1..1228}	n341893|BC042591|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4373|NULL|-1.1297900|-0.3279831	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341893|BC042591|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4373|NULL|-1.1297900|-0.3279831	chr12	 43009305	 43010532	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001159	0.9115249	A	0.9199563	A	0.994172842986038	0	lncRNA	ENST00000438829	NA	NA	NA	NA	XLOC_000935	NA	ENST00000438829	NA	NA	"BROAD Institute lincRNA (XLOC_000935), lincRNA [TCONS_00000586]"	chr1:99937982-99937923	hs|1p21.2	Agilent_HUMAN_G3V2	ENST00000438829	ENST00000438829	chr1	 99937923	 99937982	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009946	0.9094809	A	0.9167636	A	0.994964736682312	0	lncRNA	TCONS_00028127	NA	NA	NA	NA	XLOC_013486	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013486), lincRNA [TCONS_00028127]"	chr20:22666598-22666657	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028127	TCONS_00028127	chr20	 22666598	 22666657	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010663	9.973079	P	9.944412	P	1.02006918173354	0	lncRNA	TCONS_l2_00001638	NA	NA	NA	NA	XLOC_l2_001206	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001206), lincRNA [TCONS_l2_00001638]"	chr1:178459243-178459184	hs|1q25.2	Agilent_HUMAN_G3V2	TCONS_l2_00001638	TCONS_l2_00001638	chr1	178459184	178459243	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006790	0.8996265	A	0.9001512	A	0.999636371803124	0	lncRNA	ENST00000425050	NA	NA	NA	NA	XLOC_008943	NA	ENST00000425050	THC2671582	NA	"BROAD Institute lincRNA (XLOC_008943), lincRNA [TCONS_00018040]"	chr10:109631398-109631339	hs|10q25.1	Agilent_HUMAN_G3V2	ENST00000425050	ENST00000425050	chr10	109631339	109631398	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34550_PI429285431	6.1673217	P	6.3827033	P	0.861318306611437	0	lncRNA	36011-1_{1..3000}	n341432|X05562|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3902|NULL|7.1642100|-0.0428822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341432|X05562|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3902|NULL|7.1642100|-0.0428822	chr13	110959630	110962629	+	NA	NA	NA	NA	COL4A2	NA	chr13:110959631-111148104	inner
CUST_20086_PI429285431	0.9194774	A	1.0728625	A	0.899138272252656	0	lncRNA	21734-1_{1..894}	lnc-TOPBP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TOPBP1-1:1	chr3	133174589	133175482	-	lnc-TOPBP1-1	lnc-TOPBP1-1:1	ENSG00000249993.1	RP11-91K8.1	BFSP2	NA	chr3:133164589-133184620	inner
CUST_16416_PI429285431	0.92258835	A	0.90406394	A	1.01292293115318	0	lncRNA	18113-1_{1..348}	lnc-FAM153B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM153B-3:2	chr5	175406170	175406517	+	lnc-FAM153B-3	lnc-FAM153B-3:2	XLOC_004653	linc-FAM153B	NA	NA	NA	inter
CUST_32343_PI429285431	1.0567732	A	0.9014753	A	1.11365155077711	0	lncRNA	34023-1_{1..687}	n338921|AF086275|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1347|NULL|-1.0485100|-0.3929956	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338921|AF086275|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1347|NULL|-1.0485100|-0.3929956	chr2	101627701	101628387	+	NA	NA	NA	NA	TBC1D8	"hg19_refFlat_TBC1D8:range=chr2:101624283-1017677155'pad=0,hg19_refFlat_TBC1D8:range=chr2:101624283-1017677155'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70chr2:101623690-101638378"	NA	inner
CUST_8055_PI429285431	2.6897333	A	3.4670725	P	0.58344185854375	0	lncRNA	9663-1_{1..2458}	lnc-C3orf71-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C3orf71-1:1	chr3	 48974021	 48976478	-	lnc-C3orf71-1	lnc-C3orf71-1:1	ENSG00000246870	ENST00000501573	ARIH2	"hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00chr3:48964021-48986346"	NA	inner
CUST_38911_PI429285431	0.90598387	A	0.8917456	A	1.00991807803448	0	lncRNA	39900-1_{1..2011}	n384986|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pqb.1||1.2227600|-0.3467209	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384986|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003pqb.1||1.2227600|-0.3467209	chr6	 99968869	 99970879	+	NA	NA	NA	NA	CCNC	"hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-48.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-29.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-29.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-69.30;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40chr6:99990263-99991058"	NA	inner
CUST_12720_PI429285431	4.0970078	P	4.6851497	P	0.665199089946619	0	lncRNA	14340-1_{1..215}	lnc-HNRNPU-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HNRNPU-2:1	chr1	244944141	244944355	-	lnc-HNRNPU-2	lnc-HNRNPU-2:1	XLOC_001289	linc-ADSS	NA	NA	NA	inter
CUST_4004_PI429285431	1.3065618	A	0.8997824	A	1.32572303078702	0	lncRNA	3965-1_{1..726}	"transcript_id ""ENST00000542064.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000542064.1"" | genecode_v17"	chr11	 69291901	 69292626	-	ENSG00000255774.1	ENST00000542064.1	AP000439.3	AP000439.3-001	NA	NA	NA	inter
CUST_31093_PI429285431	2.7857141	A	1.5495484	A	2.35571612822213	0	lncRNA	32884-1_{1..726}	n337372|DQ655922|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393035|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393035|-0.8620040|-0.2383940	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337372|DQ655922|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393035|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393035|-0.8620040|-0.2383940	chrX	123094359	123095084	+	NA	NA	NA	NA	STAG2	NA	chrX:123094475-123174898	inner
CUST_40128_PI429285431	7.014479	P	5.994397	P	2.02803422585314	0	lncRNA	40968-1_{1..2660}	n407687|NR_027156|lncRNA|Homosapiens||RefGeneNoncode|NR_027156||12.0070000|-0.2110186	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407687|NR_027156|lncRNA|Homosapiens||RefGeneNoncode|NR_027156||12.0070000|-0.2110186	chr9	141044564	141047223	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20732_PI429285431	0.9125597	A	1.0920492	A	0.883015397458281	0	lncRNA	22366-1_{1..449}	lnc-GABRB2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GABRB2-1:1	chr5	161116266	161116714	-	lnc-GABRB2-1	lnc-GABRB2-1:1	ENSG00000253403.1	RP11-348M17.2	GABRA6	"hg19_refFlat_GABRA6:range=chr5:161112996-1611287795'pad=0,hg19_refFlat_GABRA6:range=chr5:161112996-1611287795'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00chr5:161112658-161126414"	NA	inner
CUST_20445_PI429285431	4.320697	P	3.9155798	P	1.32419647957625	0	lncRNA	22089-1_{1..578}	lnc-CNOT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CNOT2-1:1	chr12	 70595495	 70596072	+	lnc-CNOT2-1	lnc-CNOT2-1:1	ENSG00000257139.1	RP11-320P7.2	NA	NA	NA	inter
LNCA_21_P0006909	0.89441246	A	0.88868386	A	1.00397865686255	0	lncRNA	TCONS_00018330	NA	NA	NA	NA	XLOC_008609	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008609), lincRNA [TCONS_00018330]"	chr10:110748621-110748680	hs|10q25.1	Agilent_HUMAN_G3V2	TCONS_00018330	TCONS_00018330	chr10	110748621	110748680	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006203	1.1987653	A	0.9970088	A	1.15009776192856	0	lncRNA	TCONS_00016121	NA	NA	NA	NA	XLOC_007507	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007507), lincRNA [TCONS_00016121]"	chr9:110277581-110277640	hs|9q31.2	Agilent_HUMAN_G3V2	TCONS_00016121	TCONS_00016121	chr9	110277581	110277640	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009967	3.147993	P	1.6375021	A	2.84906966767866	0	lncRNA	TCONS_00028201	NA	NA	NA	NA	XLOC_013551	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013551), lincRNA [TCONS_00028201]"	chr20:47000366-47000425	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028201	TCONS_00028201	chr20	 47000366	 47000425	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005925	0.92679745	A	0.98118496	A	0.963003195210253	0	lncRNA	THC2736788	NA	NA	NA	NA	XLOC_006723	NA	NA	THC2736788	NA	"BROAD Institute lincRNA (XLOC_006723), lincRNA [TCONS_00015233]"	chr8:013487196-013487255	hs|8p22	Agilent_HUMAN_G3V2	THC2736788	THC2736788	chr8	 13487196	 13487255	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002255	0.909238	A	0.916391	A	0.995054189216354	0	lncRNA	TCONS_00003759	NA	NA	NA	NA	XLOC_001560	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001560), lincRNA [TCONS_00003759]"	chr2:88047295-88047354	hs|2p11.2	Agilent_HUMAN_G3V2	TCONS_00003759	TCONS_00003759	chr2	 88047295	 88047354	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009795	7.107457	P	7.4801736	P	0.772326832461099	0	lncRNA	TCONS_00027629	NA	NA	NA	NA	XLOC_013161	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013161), lincRNA [TCONS_00027629]"	chr19:56207617-56209281	hs|19q13.42	Agilent_HUMAN_G3V2	TCONS_00027629	TCONS_00027629	chr19	 56207617	 56209281	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_23_P303978	2.8697808	A	3.6330953	P	0.589141260182035	0	lncRNA	XR_108755	XR_108755	XR_108755	   285943	Hs.714774	LOC285943	uncharacterized LOC285943	NA	THC2709004	NA	"PREDICTED: Homo sapiens hypothetical LOC285943 (LOC285943), miscRNA [XR_108755]"	chr7:27161672-27161731	hs|7p15.2	Agilent_HUMAN_G3V2	XR_108755	XR_108755	chr7	 27161672	 27161731	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007725	1.8303559	A	1.8322107	A	0.998715176702615	0	lncRNA	TCONS_00020846	NA	NA	NA	NA	XLOC_010130	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010130), lincRNA [TCONS_00020846]"	chr12:74796329-74795907	hs|12q21.1	Agilent_HUMAN_G3V2	TCONS_00020846	TCONS_00020846	chr12	 74795907	 74796329	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8551_PI429285431	0.9082079	A	1.178951	A	0.82889249182763	0	lncRNA	10110-1_{1..2589}	lnc-IL4R-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL4R-2:1	chr16	 27280992	 27283580	+	lnc-IL4R-2	lnc-IL4R-2:1	ENSG00000245888	AC106739.1	NSMCE1	"hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0,hg19_refFlat_KDM5D:range=chrY:21867881-219064205'pad=0 3'pad=0 strand=- repeatMasking=none,-39.30chr16:27270992-27280113"	NA	inter
LNCA_21_P0010970	5.3501997	P	5.355029	P	0.996658180670608	0	lncRNA	TCONS_l2_00004475	NA	NA	NA	NA	XLOC_l2_002281	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002281), lincRNA [TCONS_l2_00004475]"	chr11:34600654-34600713	hs|11p13	Agilent_HUMAN_G3V2	TCONS_l2_00004475	TCONS_l2_00004475	chr11	 34600654	 34600713	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27615_PI429285431	1.0639464	A	1.5138578	A	0.732087806183745	0	lncRNA	29193-1_{1..831}	n324818|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000139402|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000139402|-0.3295320|-0.2663560	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324818|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000139402|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000139402|-0.3295320|-0.2663560	chr21	 32687309	 32688139	+	NA	NA	NA	NA	TIAM1	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_TVP23C:range=chr17:15406178-154667625'pad=0,hg19_refFlat_TVP23C:range=chr17:15406178-154667625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-72.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-22.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.82;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-34.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.20chr21:32677309-32698140"	NA	inner
CUST_37639_PI429285431	6.3325186	P	6.175282	P	1.11514908664681	0	lncRNA	38733-1_{1..654}	n346117|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1667|NULL|-1.7278100|-0.2018115	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346117|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1667|NULL|-1.7278100|-0.2018115	chr10	 44740522	 44741175	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42733_PI429285431	7.7298126	P	7.725632	P	1.00290197370014	0	lncRNA	45680-1_{1..135}	ENST00000384740 ncrna:snoRNA chromosome:GRCh37:16:71732470:71732604:-1 gene:ENSG00000207471 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384740 ncrna:snoRNA chromosome:GRCh37:16:71732470:71732604:-1 gene:ENSG00000207471 gene_biotype:snoRNA transcript_biotype:snoRNA	chr16	 71732470	 71732604	-	ENSG00000207471	ENST00000384740	NA	NA	PHLPP2	NA	chr16:71722470-71742604	inner
LNCA_21_P0007348	0.9053605	A	0.8891847	A	1.01127530257297	0	lncRNA	TCONS_00019628	NA	NA	NA	NA	XLOC_009429	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009429), lincRNA [TCONS_00019628]"	chr11:45029686-45029627	hs|11p11.2	Agilent_HUMAN_G3V2	TCONS_00019628	TCONS_00019628	chr11	 45029627	 45029686	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42076_PI429285431	13.423028	P	13.93895	P	0.699345850816298	0	lncRNA	43998-1_{1..115}	ENST00000578146 ncrna:miRNA chromosome:GRCh37:19:35836416:35836530:1 gene:ENSG00000263397 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578146 ncrna:miRNA chromosome:GRCh37:19:35836416:35836530:1 gene:ENSG00000263397 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 35836416	 35836530	+	ENSG00000263397	ENST00000578146	NA	NA	CD22	NA	chr19:35826416-35838264	inner
CUST_25200_PI429285431	0.92001283	A	0.91774946	A	1.00157007982074	0	lncRNA	26731-1_{1..245}	lnc-GK-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GK-1:1	chrX	 30853314	 30853558	+	lnc-GK-1	lnc-GK-1:1	ENSG00000231542.1	TAB3-AS1	TAB3	NA	chrX:30845559-30863417	inner
CUST_41945_PI429285431	4.439526	P	4.22714	P	1.15860275447052	0	lncRNA	43705-1_{1..66}	ENST00000579617 ncrna:miRNA chromosome:GRCh37:9:137742588:137742653:-1 gene:ENSG00000266514 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000579617 ncrna:miRNA chromosome:GRCh37:9:137742588:137742653:-1 gene:ENSG00000266514 gene_biotype:miRNA transcript_biotype:miRNA	chr9	137742588	137742653	-	ENSG00000266514	ENST00000579617	NA	NA	COL5A1	NA	chr9:137732588-137736689	inter
LNCA_21_P0014511	8.371931	P	8.737313	P	0.776263307062816	0	lncRNA	XR_110163	XR_110163	XR_110163	NA	NA	LOC100506070	uncharacterized LOC100506070	NA	THC2611012	NA	"PREDICTED: Homo sapiens hypothetical LOC100506070 (LOC100506070), miscRNA [XR_110163]"	chr18:77839082-77839141	hs|18q23	Agilent_HUMAN_G3V2	XR_110163	XR_110163	chr18	 77839082	 77839141	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42908_PI429285431	0.9263934	A	0.9723624	A	0.968639002694216	0	lncRNA	46006-1_{1..224}	ENST00000516305 ncrna:snoRNA chromosome:GRCh37:14:23486367:23486590:-1 gene:ENSG00000252114 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516305 ncrna:snoRNA chromosome:GRCh37:14:23486367:23486590:-1 gene:ENSG00000252114 gene_biotype:snoRNA transcript_biotype:snoRNA	chr14	 23486367	 23486590	-	ENSG00000252114	ENST00000516305	NA	NA	C14orf93	NA	chr14:23476367-23479360	inter
CUST_33921_PI429285431	0.9244398	A	1.1493415	A	0.855653324806125	0	lncRNA	35462-1_{1..1283}	n340718|BC035392|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3181|NULL|-1.1910700|-0.3991245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340718|BC035392|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3181|NULL|-1.1910700|-0.3991245	chr5	162909609	162910891	-	NA	NA	NA	NA	MAT2B	"hg19_refFlat_HMMR:range=chr5:162887733-1629181705'pad=0,hg19_refFlat_HMMR:range=chr5:162887733-1629181705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_HMMR:range=chr5:162887699-1629181705'pad=0,hg19_refFlat_HMMR:range=chr5:162887699-1629181705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70chr5:162930231-162931064"	NA	inner
LNCA_21_P0011969	0.92265725	A	0.9567566	A	0.976641271053572	0	lncRNA	TCONS_l2_00014912	NA	NA	NA	NA	XLOC_l2_008275	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008275), lincRNA [TCONS_l2_00014912]"	chr2:132794895-132786706	hs|2q21.2	Agilent_HUMAN_G3V2	TCONS_l2_00014912	TCONS_l2_00014912	chr2	132786706	132794895	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21603_PI429285431	5.3460255	P	5.6315236	P	0.820458291255875	0	lncRNA	23216-1_{1..557}	lnc-FAM110B-8:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM110B-8:4	chr8	 58121058	 58121614	+	lnc-FAM110B-8	lnc-FAM110B-8:4	ENSG00000253301.1	RP11-513O17.2	NA	NA	NA	inter
LNCA_21_P0008720	0.9138984	A	0.92346126	A	0.993393450398101	0	lncRNA	TCONS_00023625	NA	NA	NA	NA	XLOC_011424	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011424), lincRNA [TCONS_00023625]"	chr15:36606218-36606159	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00023625	TCONS_00023625	chr15	 36606159	 36606218	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3304452	0.9335552	A	1.3787595	A	0.734480299541959	0	lncRNA	ENST00000535913	XR_109614	XR_109614	NA	Hs.675276	NA	NA	ENST00000535913	THC2481014	NA	"PREDICTED: Homo sapiens hypothetical LOC100128028 (LOC100128028), miscRNA [XR_109614]"	chr20:44643197-44643138	hs|20q13.12	Agilent_HUMAN_G3V2	ENST00000535913	ENST00000535913	chr20	 44643138	 44643197	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33677_PI429285431	4.6819334	P	4.789158	P	0.928372311259081	0	lncRNA	35238-1_{1..1656}	n340445|CR605684|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2906|NULL|-1.1790800|-0.3504249	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340445|CR605684|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2906|NULL|-1.1790800|-0.3504249	chr5	 43287800	 43289455	-	NA	NA	NA	NA	NIM1	NA	chr5:43277800-43280952	inner
LNCA_21_P0012299	0.9002477	A	0.9012124	A	0.99933154443095	0	lncRNA	TCONS_l2_00018070	NA	NA	NA	NA	XLOC_l2_009571	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009571), lincRNA [TCONS_l2_00018070]"	chr22:42546749-42546240	hs|22q13.2	Agilent_HUMAN_G3V2	TCONS_l2_00018070	TCONS_l2_00018070	chr22	 42546240	 42546749	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006164	1.4853446	A	2.5520146	A	0.477419698880207	0	lncRNA	TCONS_00016036	NA	NA	NA	NA	XLOC_007431	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007431), lincRNA [TCONS_00016036]"	chr9:87271377-87271436	hs|9q21.33	Agilent_HUMAN_G3V2	TCONS_00016036	TCONS_00016036	chr9	 87271377	 87271436	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3978_PI429285431	6.9993796	P	8.389449	P	0.381546447730269	0	lncRNA	3943-6_{15001..18000}	"transcript_id ""ENST00000501122.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,lncrnadb20130808,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000501122.2"" | genecode_v17"	chr11	 65205269	 65208268	+	ENSG00000245532.3	ENST00000501122.2	NEAT1	NEAT1-001	FRMD8	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.90;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.70;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-50.40;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-57.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0,hg19_refFlat_GPR107:range=chr9:132816212-1328974005'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30chr11:65180269-65180996"	NA	inter
CUST_23198_PI429285431	8.257151	P	7.778257	P	1.39367483661653	0	lncRNA	24770-1_{1..472}	lnc-PCBD1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PCBD1-3:2	chr10	 72977523	 72977994	-	lnc-PCBD1-3	lnc-PCBD1-3:2	ENSG00000237512.1	RP11-790G19.2	UNC5B	NA	chr10:72972298-72987582	inner
CUST_31634_PI429285431	2.5661535	A	2.5679386	A	0.998763428153818	0	lncRNA	33386-1_{1..1943}	n338154|CR607568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|543|NULL|-0.7695080|-0.2145822	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338154|CR607568|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|543|NULL|-0.7695080|-0.2145822	chr22	 43812621	 43814563	+	NA	NA	NA	NA	MPPED1	NA	chr22:43808020-43825206	inner
CUST_9318_PI429285431	1.5703965	A	2.46545	A	0.537727254117989	0	lncRNA	10826-1_{1..222}	lnc-DHFR-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHFR-2:6	chr5	 80244148	 80244369	-	lnc-DHFR-2	lnc-DHFR-2:6	XLOC_004907	linc-MTRNR2L2-1	NA	NA	NA	inter
CUST_36872_PI429285431	0.90180784	A	0.9299279	A	0.980697387691006	0	lncRNA	38031-1_{1..534}	n345341|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_890|NULL|-1.3007900|-0.3154166	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345341|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_890|NULL|-1.3007900|-0.3154166	chr17	  6766701	  6767234	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43165_PI429285431	2.199597	A	3.1753545	A	0.508472797736166	0	lncRNA	47980-1_{1..1587}	ENST00000587526 havana:sense_intronic chromosome:GRCh37:17:41127706:41129292:-1 gene:ENSG00000267230 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000587526 havana:sense_intronic chromosome:GRCh37:17:41127706:41129292:-1 gene:ENSG00000267230 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr17	 41127706	 41129292	-	ENSG00000267230	ENST00000587526	NA	NA	AARSD1	"hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-46.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0,hg19_refFlat_RAD51B:range=chr14:68290261-690613205'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-89.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6667194-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10chr17:41117706-41132545"	NA	inner
LNCA_21_P0008610	2.364376	A	3.1229284	P	0.591089132008126	0	lncRNA	TCONS_00023349	NA	NA	NA	NA	XLOC_011211	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011211), lincRNA [TCONS_00023349]"	chr15:36743408-36777171	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00023349	TCONS_00023349	chr15	 36743408	 36777171	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6373_PI429285431	3.7370653	P	3.5281873	P	1.15578896433496	0	lncRNA	6299-1_{1..759}	"transcript_id ""ENST00000598950.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000598950.1"" | genecode_v17"	chr19	 17563020	 17563778	-	ENSG00000269736.1	ENST00000598950.1	CTD-2521M24.11	CTD-2521M24.11-001	TMEM221	NA	chr19:17553020-17559376	inter
CUST_14640_PI429285431	0.9121041	A	0.89075845	A	1.01490567497342	0	lncRNA	16310-1_{1..202}	lnc-CSRNP3-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CSRNP3-3:1	chr2	166841127	166841328	+	lnc-CSRNP3-3	lnc-CSRNP3-3:1	XLOC_001740	linc-XIRP2-2	SCN1A	NA	chr2:166845670-166851278	inter
CUST_46984_PI429285431	2.7658794	A	2.1534278	A	1.52885501611992	0	lncRNA	51085-1_{1..3000}	"gi|374081841|ref|NR_046177.1| Homo sapiens microtubule-associated protein, RP/EB family, member 2 (MAPRE2), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|374081841|ref|NR_046177.1| Homo sapiens microtubule-associated protein, RP/EB family, member 2 (MAPRE2), transcript variant 5, non-coding RNA"	Chr18	 32621614	 32624613	+	10982	NR_046177.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0011030	0.9054103	A	0.88960683	A	1.01101434683401	0	lncRNA	ENST00000508543	NA	NA	NA	NA	XLOC_l2_002709	NA	ENST00000508543	THC2663472	NA	"BROAD Institute lincRNA (XLOC_l2_002709), lincRNA [TCONS_l2_00005381]"	chr11:71125273-71125214	hs|11q13.4	Agilent_HUMAN_G3V2	ENST00000508543	ENST00000508543	chr11	 71125214	 71125273	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012636	0.90523595	A	0.8897954	A	1.01076005110975	0	lncRNA	TCONS_l2_00020894	NA	NA	NA	NA	XLOC_l2_010947	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010947), lincRNA [TCONS_l2_00020894]"	chr4:174847092-174850418	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_l2_00020894	TCONS_l2_00020894	chr4	174847092	174850418	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011415	5.18374	P	5.0811625	P	1.0736899904311	0	lncRNA	TCONS_l2_00009584	NA	NA	NA	NA	XLOC_l2_005116	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005116), lincRNA [TCONS_l2_00009584]"	chr16:8976597-8977075	hs|16p13.2	Agilent_HUMAN_G3V2	TCONS_l2_00009584	TCONS_l2_00009584	chr16	  8976597	  8977075	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3243500	4.748561	P	4.5962496	P	1.11134858295019	0	lncRNA	ENST00000536864	XR_133475	XR_133475	NA	Hs.434403	NA	NA	ENST00000536864	THC2478567	NA	"PREDICTED: Homo sapiens hypothetical LOC729732 (LOC729732), miscRNA [XR_133475]"	chr12:8543553-8543494	hs|12p13.31	Agilent_HUMAN_G3V2	ENST00000536864	ENST00000536864	chr12	  8543494	  8543553	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30091_PI429285431	5.3016105	P	5.3613853	P	0.959413869019361	0	lncRNA	31863-1_{1..385}	n334627|U86146|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221967|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221967|1.2851600|-0.0576672	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334627|U86146|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221967|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221967|1.2851600|-0.0576672	chr11	  2466329	  2466713	+	NA	NA	NA	NA	KCNQ1	NA	chr11:2466221-2476714	inner
LNCA_21_P0010149	0.97950155	A	0.9976195	A	0.987520121748751	0	lncRNA	ENST00000415269	NA	NA	NA	NA	XLOC_013885	NA	ENST00000415269	NA	NA	"BROAD Institute lincRNA (XLOC_013885), lincRNA [TCONS_00028808]"	chr21:25415582-25415641	hs|21q21.2	Agilent_HUMAN_G3V2	ENST00000415269	ENST00000415269	chr21	 25415582	 25415641	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28619_PI429285431	1.3240238	A	2.2434466	A	0.528720510879864	0	lncRNA	30303-1_{1..732}	n325987|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047743|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047743|-1.1086500|-0.2028064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325987|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000047743|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000047743|-1.1086500|-0.2028064	chr10	 44406661	 44407392	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8695_PI429285431	3.6927948	P	3.6142697	P	1.055937979123	0	lncRNA	10242-1_{1..1664}	lnc-MAP7D2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP7D2-1:1	chrX	 20007803	 20009466	-	lnc-MAP7D2-1	lnc-MAP7D2-1:1	ENSG00000246650	XLOC_008126	NA	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-67.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50"	NA	inter
CUST_30494_PI429285431	12.896806	P	12.541552	P	1.2792107785143	0	lncRNA	32274-1_{1..468}	n335648|CR608990|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000288185|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000288185|-1.4203400|-0.4516572	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335648|CR608990|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000288185|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000288185|-1.4203400|-0.4516572	chr4	122589152	122589619	-	NA	NA	NA	NA	ANXA5	NA	chr4:122589152-122599620	inner
LNCA_21_P0001409	4.4336643	P	4.0550213	P	1.30011838783797	0	lncRNA	TCONS_00001253	NA	NA	NA	NA	XLOC_000541	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000541), lincRNA [TCONS_00001253]"	chr1:207597462-207597521	hs|1q32.2	Agilent_HUMAN_G3V2	TCONS_00001253	TCONS_00001253	chr1	207597462	207597521	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37287_PI429285431	10.3390875	P	10.636053	P	0.81396264959679	0	lncRNA	38396-1_{1..1427}	n345730|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1279|NULL|-1.6743900|-0.5287323	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345730|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1279|NULL|-1.6743900|-0.5287323	chr1	   564461	   565887	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17103_PI429285431	1.3093275	A	1.7177333	A	0.753455493667828	0	lncRNA	18812-1_{1..425}	lnc-PIGF-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PIGF-3:3	chr2	 46727004	 46727428	-	lnc-PIGF-3	lnc-PIGF-3:3	XLOC_002085	linc-SRBD1-5	NA	NA	NA	inter
CUST_42529_PI429285431	4.124921	P	4.5316906	P	0.754310492947977	0	lncRNA	45323-1_{1..132}	ENST00000578065 ncrna:snoRNA chromosome:GRCh37:HSCHR6_MHC_MCF:31667152:31667283:1 gene:ENSG00000265754 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000578065 ncrna:snoRNA chromosome:GRCh37:HSCHR6_MHC_MCF:31667152:31667283:1 gene:ENSG00000265754 gene_biotype:snoRNA transcript_biotype:snoRNA	chrHSCHR6_MHC_MCF	 31667152	 31667283	+	ENSG00000265754	ENST00000578065	NA	NA	NA	NA	NA	Unknown
CUST_23849_PI429285431	1.269666	A	0.9138657	A	1.27969526425621	0	lncRNA	25412-1_{1..262}	lnc-ANGEL1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ANGEL1-2:2	chr14	 77247743	 77248004	-	lnc-ANGEL1-2	lnc-ANGEL1-2:2	ENSG00000259081.1	RP11-488C13.6	VASH1	NA	chr14:77237743-77249363	inner
LNCA_21_P0004856	5.339192	P	5.664542	P	0.798104741450361	0	lncRNA	TCONS_00011739	NA	NA	NA	NA	XLOC_005205	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005205), lincRNA [TCONS_00011739]"	chr6:24798029-24798088	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00011739	TCONS_00011739	chr6	 24798029	 24798088	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14603_PI429285431	11.694568	P	12.612234	P	0.529364737095822	0	lncRNA	16270-1_{1..544}	lnc-PCDH9-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCDH9-3:1	chr13	 65216354	 65216897	-	lnc-PCDH9-3	lnc-PCDH9-3:1	XLOC_010647	linc-PCDH20-12	NA	NA	NA	inter
LNCA_21_P0008803	0.90749377	A	0.91352624	A	0.995827340265209	0	lncRNA	TCONS_00023840	NA	NA	NA	NA	XLOC_011614	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011614), lincRNA [TCONS_00023840]"	chr15:101710682-101709639	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_00023840	TCONS_00023840	chr15	101709639	101710682	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51961_PI429285431	6.4837337	P	6.7871723	P	0.810318733908838	0	lncRNA	55504-1_{1..1603}	hg19_lincRNAsTranscripts_TCONS_l2_00016556 range=chr20:29872932-29874661 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016556 range=chr20:29872932-29874661 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	 29872932	 29874534	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_16092_PI429285431	11.900186	P	11.465122	P	1.35197080704205	0	lncRNA	17797-1_{1..515}	lnc-C22orf26-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C22orf26-5:1	chr22	 46536790	 46537304	-	lnc-C22orf26-5	lnc-C22orf26-5:1	XLOC_014405	linc-C22orf26	PPARA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.20;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.59;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40chr22:46546499-46546813"	NA	inter
LNCA_21_P0014325	3.8400242	P	3.583487	P	1.19460792688142	0	lncRNA	XR_109294	XR_109294	XR_109294	NA	Hs.371893	C16orf47	chromosome 16 open reading frame 47	ENST00000358463	THC2485943	NA	"PREDICTED: Homo sapiens chromosome 16 open reading frame 47 (C16orf47), miscRNA [XR_109294]"	chr16:73161313-73161254	hs|16q22.3	Agilent_HUMAN_G3V2	XR_109294	XR_109294	chr16	 73161254	 73161313	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002094	1.8320339	A	0.90428853	A	1.90230077442855	0	lncRNA	ENST00000413991	NA	NA	NA	NA	XLOC_002296	NA	ENST00000413991	THC2673885	NA	"BROAD Institute lincRNA (XLOC_002296), lincRNA [TCONS_00003390]"	chr2:121300573-121300514	hs|2q14.2	Agilent_HUMAN_G3V2	ENST00000413991	ENST00000413991	chr2	121300514	121300573	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001372	0.900589	A	0.9017369	A	0.99920465280782	0	lncRNA	THC2681064	NA	NA	NA	NA	XLOC_000387	NA	NA	THC2681064	NA	"BROAD Institute lincRNA (XLOC_000387), lincRNA [TCONS_00001139]"	chr1:147267244-147267303	hs|1q21.2	Agilent_HUMAN_G3V2	THC2681064	THC2681064	chr1	147267244	147267303	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25938_PI429285431	2.015499	A	2.3283098	A	0.805071710577225	0	lncRNA	27457-1_{1..564}	lnc-C2orf42-3:36	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C2orf42-3:36	chr2	 70313187	 70313750	-	lnc-C2orf42-3	lnc-C2orf42-3:36	ENSG00000179818.6	PCBP1-AS1	PCBP1	NA	chr2:70314585-70316335	inter
LNCA_21_P0002575	4.4316263	P	4.374328	P	1.040515387282	0	lncRNA	TCONS_00004704	NA	NA	NA	NA	XLOC_001376	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001376), lincRNA [TCONS_00004704]"	chr2:19297580-19299531	hs|2p24.1	Agilent_HUMAN_G3V2	TCONS_00004704	TCONS_00004704	chr2	 19297580	 19299531	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43258_PI429285431	0.9038437	A	0.89790344	A	1.00412596291512	0	lncRNA	48076-1_{1..889}	ENST00000589702 havana:sense_intronic chromosome:GRCh37:19:14569213:14570178:1 gene:ENSG00000267474 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000589702 havana:sense_intronic chromosome:GRCh37:19:14569213:14570178:1 gene:ENSG00000267474 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr19	 14569213	 14570101	+	ENSG00000267474	ENST00000589702	NA	NA	PKN1	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-39.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-34.60;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-70.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.60;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.40;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-64.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80chr19:14559213-14580178"	NA	inner
LNCA_21_P0005281	0.8987226	A	0.89913625	A	0.999713320769107	0	lncRNA	ENST00000437145	NA	NA	NA	NA	XLOC_006337	NA	ENST00000437145	NA	NA	"BROAD Institute lincRNA (XLOC_006337), lincRNA [TCONS_00013118]"	chr7:3122965-3122906	hs|7p22.2	Agilent_HUMAN_G3V2	ENST00000437145	ENST00000437145	chr7	  3122906	  3122965	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0000968	4.360475	P	4.3104677	P	1.03527016226866	0	lncRNA	ENST00000429328	NA	NA	NA	NA	XLOC_000175	NA	ENST00000429328	THC2705847	NA	"BROAD Institute lincRNA (XLOC_000175), lincRNA [TCONS_00000193]"	chr1:47644933-47644992	hs|1p33	Agilent_HUMAN_G3V2	ENST00000429328	ENST00000429328	chr1	 47644933	 47644992	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50787_PI429285431	2.4257882	A	2.0577545	A	1.2905926371305	0	lncRNA	54443-1_{1..385}	hg19_lincRNAsTranscripts_TCONS_l2_00004345 range=chr11:3403111-3405644 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00004345 range=chr11:3403111-3405644 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr11	  3403111	  3403495	+	NA	NA	NA	NA	ZNF195	NA	chr11:3393111-3400452	inter
CUST_20470_PI429285431	0.9074881	A	0.89089876	A	1.01156522020641	0	lncRNA	22114-1_{1..492}	lnc-SPATA7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SPATA7-1:1	chr14	 88981333	 88981824	+	lnc-SPATA7-1	lnc-SPATA7-1:1	ENSG00000258983.1	RP11-507K2.2	PTPN21	"hg19_refFlat_PTPN21:range=chr14:88934481-890167615'pad=0,hg19_refFlat_PTPN21:range=chr14:88934481-890167615'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr14:88971333-88991433"	NA	inner
CUST_28108_PI429285431	1.4163854	A	1.2699577	A	1.10682543287414	0	lncRNA	29730-1_{1..582}	n325380|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324011|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324011|-1.0715100|-0.3494684	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325380|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000324011|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000324011|-1.0715100|-0.3494684	chr2	 21472959	 21473540	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31496_PI429285431	2.1025226	A	0.9025391	A	2.29737043498246	0	lncRNA	33260-1_{1..3000}	n337977|AK128778|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|363|NULL|-1.0820600|-0.3246153	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337977|AK128778|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|363|NULL|-1.0820600|-0.3246153	chr1	 61760223	 61763222	+	NA	NA	NA	NA	NFIA	NA	chr1:61750223-61774056	inner
CUST_4375_PI429285431	3.2559795	A	3.8667345	P	0.654853910084244	0	lncRNA	4329-1_{1..1188}	"transcript_id ""ENST00000546710.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546710.2"" | genecode_v17"	chr12	 92271167	 92272354	+	ENSG00000257893.2	ENST00000546710.2	RP11-587P21.2	RP11-587P21.2-001	NA	NA	NA	inter
CUST_48766_PI429285431	17.562222	P	17.696775	P	0.910952036325841	0	lncRNA	52603-1_{1..229}	hg19_lincRNAsTranscripts_TCONS_l2_00014091 range=chr2:174162678-174163271 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014091 range=chr2:174162678-174163271 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	174162678	174162906	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19542_PI429285431	0.918884	A	0.9201499	A	0.99912292983521	0	lncRNA	21198-1_{1..470}	lnc-FOXB1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FOXB1-5:1	chr15	 61056941	 61057410	+	lnc-FOXB1-5	lnc-FOXB1-5:1	ENSG00000259591.1	RP11-554D20.1	RORA	NA	chr15:61046941-61067234	inner
CUST_47106_PI429285431	4.1084223	P	2.4771168	A	3.09793204909629	0	lncRNA	51187-1_{1..2681}	"gi|194272218|ref|NR_024018.1| Homo sapiens zinc finger protein 30 (ZNF30), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|194272218|ref|NR_024018.1| Homo sapiens zinc finger protein 30 (ZNF30), transcript variant 4, non-coding RNA"	Chr19	 35417807	 35420487	+	90075	NR_024018.1	NA	NA	NA	NA	NA	inter
CUST_34_PI429201921	0.92766213	A	1.2023497	A	0.826629313594236	0	lncRNA	35-1_{1..1147}	TC19002541.hg.1	TCONS_l2_00013168-XLOC_l2_007088 // Broad TUCP // linc-LHB chr19:-:49521582-49522730 // chr19 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr19:-:49521582-49522730	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00013168-XLOC_l2_007088	linc-LHB	chr19	 49521582	 49522730	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009225	2.208881	A	1.3991543	A	1.75287935075409	0	lncRNA	TCONS_00025313	NA	NA	NA	NA	XLOC_012116	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012116), lincRNA [TCONS_00025313]"	chr17:14277530-14285152	hs|17p12	Agilent_HUMAN_G3V2	TCONS_00025313	TCONS_00025313	chr17	 14277530	 14285152	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014795	4.110235	P	3.7631936	P	1.27194950645594	0	lncRNA	XR_132596	XR_132596	XR_132596	NA	NA	LOC100652749	uncharacterized LOC100652749	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652749 (LOC100652749), miscRNA [XR_132596]"	chr15:97315296-97315237	hs|15q26.2	Agilent_HUMAN_G3V2	XR_132596	XR_132596	chr15	 97315237	 97315296	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17652_PI429285431	0.92325264	A	0.93261427	A	0.993532020574245	0	lncRNA	19381-1_{1..478}	lnc-SDCBP-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SDCBP-1:2	chr8	 59439455	 59439932	+	lnc-SDCBP-1	lnc-SDCBP-1:2	XLOC_006811	linc-SDCBP	NA	NA	NA	inter
CUST_17782_PI429285431	1.1978549	A	1.1754707	A	1.0156365361265	0	lncRNA	19514-1_{1..730}	lnc-FGGY-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGGY-6:2	chr1	 59184233	 59184962	+	lnc-FGGY-6	lnc-FGGY-6:2	XLOC_000218	linc-FGGY-4	NA	NA	NA	inter
CUST_4258_PI429285431	1.0520496	A	0.99918604	A	1.03732182928781	0	lncRNA	4215-1_{1..724}	"transcript_id ""ENST00000547443.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000547443.1"" | genecode_v17"	chr12	 50318783	 50319506	+	ENSG00000257771.1	ENST00000547443.1	RP11-70F11.8	RP11-70F11.8-003	NA	"hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60"	NA	inter
LNCA_21_P0012786	0.912733	A	0.92149335	A	0.993946186716538	0	lncRNA	TCONS_l2_00021944	NA	NA	NA	NA	XLOC_l2_011218	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011218), lincRNA [TCONS_l2_00021944]"	chr4:110283924-110278495	hs|4q25	Agilent_HUMAN_G3V2	TCONS_l2_00021944	TCONS_l2_00021944	chr4	110278495	110283924	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36075_PI429285431	1.2220935	A	1.5025265	A	0.823343867738517	0	lncRNA	37381-1_{1..522}	n344665|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_214|NULL|-1.3360500|-0.1511888	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344665|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_214|NULL|-1.3360500|-0.1511888	chr18	 37115421	 37115942	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_8155_PI429285431	12.590611	P	12.491918	P	1.07080293616648	0	lncRNA	9758-1_{1..2905}	lnc-AP3S1-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP3S1-6:1	chr5	114513217	114516121	+	lnc-AP3S1-6	lnc-AP3S1-6:1	ENSG00000245358	ENST00000502182	TRIM36	"hg19_refFlat_TRIM36:range=chr5:114462200-1145157345'pad=0,hg19_refFlat_TRIM36:range=chr5:114462200-1145157345'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TRIM36:range=chr5:114506800-1145157345'pad=0,hg19_refFlat_TRIM36:range=chr5:114506800-1145157345'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_TRIM36:range=chr5:114513447-1145157345'pad=0,hg19_refFlat_TRIM36:range=chr5:114513447-1145157345'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90chr5:114503217-114516243"	NA	inner
CUST_49365_PI429285431	1.3449172	A	1.4655071	A	0.919811474288955	0	lncRNA	53178-1_{1..2074}	hg19_lincRNAsTranscripts_TCONS_l2_00022453 range=chr5:98860221-98913717 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022453 range=chr5:98860221-98913717 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	 98860221	 98862294	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_5816_PI429285431	12.78782	P	13.379925	P	0.663374287859778	0	lncRNA	5743-1_{1..321}	"transcript_id ""ENST00000447729.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000447729.1"" | genecode_v17"	chr17	 32806331	 32806651	+	ENSG00000225582.1	ENST00000447729.1	AC011193.1	AC011193.1-002	NA	NA	NA	inter
CUST_47661_PI429285431	0.90651685	A	1.0796655	A	0.886904917017801	0	lncRNA	51644-1_{1..3000}	"gi|226342929|ref|NR_027456.1| Homo sapiens uncharacterized LOC100272228 (LOC100272228), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|226342929|ref|NR_027456.1| Homo sapiens uncharacterized LOC100272228 (LOC100272228), non-coding RNA"	NW_004070890.2	  5462946	  5465945	+	100272228	NR_027456.1	NA	NA	NA	NA	NA	Unknown
CUST_27170_PI429285431	5.8724494	P	6.4049253	P	0.691367216451541	0	lncRNA	28709-1_{1..914}	n324298|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043209|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043209|1.1063400|-0.1797049	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324298|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000043209|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000043209|1.1063400|-0.1797049	chr6	169104629	169105542	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0001648	0.9024991	A	0.884525	A	1.01253662961136	0	lncRNA	TCONS_00001891	NA	NA	NA	NA	XLOC_001273	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001273), lincRNA [TCONS_00001891]"	chr1:239416574-239414229	hs|1q43	Agilent_HUMAN_G3V2	TCONS_00001891	TCONS_00001891	chr1	239414229	239416574	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4026_PI429285431	2.1172285	A	2.628213	A	0.70174340235668	0	lncRNA	3987-1_{1..834}	"transcript_id ""ENST00000526851.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000526851.1"" | genecode_v17"	chr11	 79316011	 79316844	-	ENSG00000255209.1	ENST00000526851.1	RP11-258O13.1	RP11-258O13.1-001	NA	NA	NA	inter
CUST_21913_PI429285431	1.5053295	A	2.6388273	A	0.455809279238788	0	lncRNA	23522-1_{1..692}	lnc-WDR16-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR16-2:1	chr17	  9397716	  9398407	+	lnc-WDR16-2	lnc-WDR16-2:1	ENSG00000265302.1	RP11-565F19.5	STX8	"hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00chr17:9387716-9408337"	NA	inner
CUST_32442_PI429285431	0.94967324	A	0.93039626	A	1.01345145190485	0	lncRNA	34114-2_{3001..3602}	n339039|BC043155|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1468|NULL|-0.9148540|-0.3724173	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339039|BC043155|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1468|NULL|-0.9148540|-0.3724173	chr2	179591183	179591784	+	NA	NA	NA	NA	TTN	"hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0,hg19_refFlat_TTN:range=chr2:179391739-1796693695'pad=0 3'pad=0 strand=- repeatMasking=none,-35.10chr2:179578183-179601767"	NA	inner
CUST_12152_PI429285431	0.924059	A	0.92053014	A	1.00244901330553	0	lncRNA	13752-1_{1..1303}	lnc-HPRT1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HPRT1-1:5	chrX	133693416	133694718	+	lnc-HPRT1-1	lnc-HPRT1-1:5	XLOC_008068	linc-FAM122C-2	PLAC1	NA	chrX:133699873-133704395	inter
LNCA_21_P0005903	0.9239984	A	1.9918958	A	0.477013697803324	0	lncRNA	ENST00000520224	NA	NA	NA	NA	XLOC_007212	NA	ENST00000520224	NA	NA	"BROAD Institute lincRNA (XLOC_007212), lincRNA [TCONS_00015166]"	chr8:127802817-127781646	hs|8q24.21	Agilent_HUMAN_G3V2	ENST00000520224	ENST00000520224	chr8	127781646	127802817	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20229_PI429285431	0.9177949	A	0.9102416	A	1.00524927803341	0	lncRNA	21872-2_{3001..3600}	lnc-AC005481.5.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC005481.5.1-2:1	chr7	157823325	157823924	+	lnc-AC005481.5.1-2	lnc-AC005481.5.1-2:1	ENSG00000231980.1	AC011899.10	PTPRN2	NA	chr7:157810325-157833820	inner
CUST_45172_PI429285431	14.149334	P	14.420691	P	0.828539853996034	0	lncRNA	49647-1_{1..1085}	"gi|112734764|ref|NR_003129.1| Homo sapiens ring finger protein 5, E3 ubiquitin protein ligase pseudogene 1 (RNF5P1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|112734764|ref|NR_003129.1| Homo sapiens ring finger protein 5, E3 ubiquitin protein ligase pseudogene 1 (RNF5P1), non-coding RNA"	Chr8	 38457691	 38458775	-	286140	NR_003129.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0010844	8.738063	P	9.029211	P	0.817251485804471	0	lncRNA	TCONS_l2_00003281	NA	NA	NA	NA	XLOC_l2_001760	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001760), lincRNA [TCONS_l2_00003281]"	chr10:120124659-120124718	hs|10q26.11	Agilent_HUMAN_G3V2	TCONS_l2_00003281	TCONS_l2_00003281	chr10	120124659	120124718	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34469_PI429285431	1.7080325	A	1.4733448	A	1.17665199994931	0	lncRNA	35939-1_{1..3000}	n341343|AK124873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3812|NULL|-1.1113500|-0.2815020	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341343|AK124873|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3812|NULL|-1.1113500|-0.2815020	chr7	141176430	141179429	+	NA	NA	NA	NA	LOC100507421	NA	chr7:141166430-141180180	inner
CUST_47285_PI429285431	12.220836	P	12.108466	P	1.08100260523741	0	lncRNA	51354-1_{1..2206}	"gi|386642894|ref|NR_047691.1| Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class T (PIGT), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386642894|ref|NR_047691.1| Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class T (PIGT), transcript variant 5, non-coding RNA"	Chr20	 44044707	 44046912	+	51604	NR_047691.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004018	2.9110706	A	2.753733	A	1.11522715858657	0	lncRNA	ENST00000512650	NA	NA	NA	NA	XLOC_004435	NA	ENST00000512650	NA	NA	"BROAD Institute lincRNA (XLOC_004435), lincRNA [TCONS_00009428]"	chr5:76370031-76370345	hs|5q13.3	Agilent_HUMAN_G3V2	ENST00000512650	ENST00000512650	chr5	 76370031	 76370345	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30699_PI429285431	4.857509	P	5.1390686	P	0.822701169804269	0	lncRNA	32481-1_{1..351}	n336199|X93713|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324663|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324663|1.9794800|-0.0367282	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336199|X93713|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324663|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324663|1.9794800|-0.0367282	chr2	 89442055	 89442405	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009332	3.2125623	P	2.5733953	A	1.55742965286091	0	lncRNA	TCONS_00025695	NA	NA	NA	NA	XLOC_012515	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012515), lincRNA [TCONS_00025695]"	chr17:48365112-48364208	hs|17q21.33	Agilent_HUMAN_G3V2	TCONS_00025695	TCONS_00025695	chr17	 48364208	 48365112	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00321549	0.903979	A	0.88542384	A	1.01294452110199	0	lncRNA	ENST00000456253	NA	NA	NA	NA	XLOC_l2_009639	NA	ENST00000456253	THC2665784	NA	"BROAD Institute lincRNA (XLOC_l2_009639), lincRNA [TCONS_l2_00019763]"	chr3:18567952-18568011	hs|3p24.3	Agilent_HUMAN_G3V2	ENST00000456253	ENST00000456253	chr3	 18567952	 18568011	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011232	0.90665233	A	0.88916063	A	1.01219812008354	0	lncRNA	ENST00000433074	NA	NA	NA	NA	XLOC_l2_004050	NA	ENST00000433074	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004050), lincRNA [TCONS_l2_00007579]"	chr13:85639293-85639234	hs|13q31.1	Agilent_HUMAN_G3V2	ENST00000433074	ENST00000433074	chr13	 85639234	 85639293	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005706	3.4229357	P	3.6628218	P	0.846812165089928	0	lncRNA	TCONS_00014730	NA	NA	NA	NA	XLOC_006818	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006818), lincRNA [TCONS_00014730]"	chr8:62722445-62722504	hs|8q12.3	Agilent_HUMAN_G3V2	TCONS_00014730	TCONS_00014730	chr8	 62722445	 62722504	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007117	4.770426	P	4.6906123	P	1.05688155312551	0	lncRNA	TCONS_00019038	NA	NA	NA	NA	XLOC_008965	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008965), lincRNA [TCONS_00019038]"	chr10:119875197-119875138	hs|10q26.11	Agilent_HUMAN_G3V2	TCONS_00019038	TCONS_00019038	chr10	119875138	119875197	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42729_PI429285431	6.8346896	P	6.822421	P	1.00854020675899	0	lncRNA	45674-1_{1..128}	ENST00000390832 ncrna:snoRNA chromosome:GRCh37:20:29964122:29964249:1 gene:ENSG00000212134 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390832 ncrna:snoRNA chromosome:GRCh37:20:29964122:29964249:1 gene:ENSG00000212134 gene_biotype:snoRNA transcript_biotype:snoRNA	chr20	 29964122	 29964249	+	ENSG00000212134	ENST00000390832	NA	NA	DEFB118	NA	chr20:29954122-29961726	inter
LNCA_33_P3374165	4.6709785	P	3.7478747	P	1.89619035373743	0	lncRNA	ENST00000528269	XR_110084	XR_110084	NA	Hs.638538	NA	NA	ENST00000528269	THC2616368	NA	"PREDICTED: Homo sapiens hypothetical LOC728145 (LOC728145), miscRNA [XR_110084]"	chr5:170733121-170733062	hs|5q35.1	Agilent_HUMAN_G3V2	ENST00000528269	ENST00000528269	chr5	170733062	170733121	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14924_PI429285431	3.8473015	P	3.1915495	A	1.57543693042316	0	lncRNA	16586-1_{1..374}	lnc-CDH2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDH2-1:2	chr18	 25513795	 25514168	-	lnc-CDH2-1	lnc-CDH2-1:2	XLOC_012798	linc-CHST9-2	NA	NA	NA	inter
LNCA_21_P0002610	0.92502344	A	0.9711838	A	0.968510530313156	0	lncRNA	TCONS_00004888	NA	NA	NA	NA	XLOC_001674	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001674), lincRNA [TCONS_00004888]"	chr2:132166845-132166904	hs|2q21.1	Agilent_HUMAN_G3V2	TCONS_00004888	TCONS_00004888	chr2	132166845	132166904	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009978	3.1434484	P	3.4553742	P	0.805565721453483	0	lncRNA	TCONS_00028230	NA	NA	NA	NA	XLOC_013574	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013574), lincRNA [TCONS_00028230]"	chr20:54615871-54615930	hs|20q13.2	Agilent_HUMAN_G3V2	TCONS_00028230	TCONS_00028230	chr20	 54615871	 54615930	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25234_PI429285431	0.90943044	A	0.911702	A	0.99842671350534	0	lncRNA	26765-1_{1..568}	lnc-THOC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THOC3-1:1	chr5	175385455	175386022	-	lnc-THOC3-1	lnc-THOC3-1:1	ENSG00000250820.1	RP11-91H12.2	THOC3	NA	chr5:175386534-175395541	inter
LNCA_21_P0005460	0.9108752	A	0.9184175	A	0.994785717831495	0	lncRNA	ENST00000469418	NA	AK092558	NA	Hs.652849	XLOC_006324	NA	ENST00000469418	THC2510316	NA	"BROAD Institute lincRNA (XLOC_006324), lincRNA [TCONS_00013664]"	chr7:31485-31426	hs|7p22.3	Agilent_HUMAN_G3V2	ENST00000469418	ENST00000469418	chr7	    31426	    31485	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15219_PI429285431	4.952093	P	5.3228564	P	0.773373159188848	0	lncRNA	16889-2_{3001..4212}	lnc-TNFRSF14-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TNFRSF14-1:1	chr1	  2486442	  2487653	+	lnc-TNFRSF14-1	lnc-TNFRSF14-1:1	XLOC_000022	linc-TNFRSF14	TNFRSF14	NA	chr1:2487805-2495268	inter
LNCA_21_P0003677	1.1808152	A	2.0376904	A	0.552147184879931	0	lncRNA	TCONS_00008324	NA	NA	NA	NA	XLOC_003780	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003780), lincRNA [TCONS_00008324]"	chr4:174278661-174278720	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_00008324	TCONS_00008324	chr4	174278661	174278720	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004308	1.8038788	A	2.488617	A	0.622118709758106	0	lncRNA	TCONS_00010118	NA	NA	NA	NA	XLOC_004584	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004584), lincRNA [TCONS_00010118]"	chr5:141548112-141548171	hs|5q31.3	Agilent_HUMAN_G3V2	TCONS_00010118	TCONS_00010118	chr5	141548112	141548171	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008129	0.9001154	A	1.4838604	A	0.667229508921376	0	lncRNA	TCONS_00021936	NA	NA	NA	NA	XLOC_010529	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010529), lincRNA [TCONS_00021936]"	chr13:22244861-22244802	hs|13q12.11	Agilent_HUMAN_G3V2	TCONS_00021936	TCONS_00021936	chr13	 22244802	 22244861	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44050_PI429285431	5.7358365	P	5.967639	P	0.851570276818254	0	lncRNA	48725-1_{1..491}	"gi|380503828|ref|NR_046452.1| Homo sapiens IDH1 antisense RNA 1 (IDH1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|380503828|ref|NR_046452.1| Homo sapiens IDH1 antisense RNA 1 (IDH1-AS1), non-coding RNA"	NA	NA	NA	NA	NA	NR_046452.1	NA	NA	NA	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70"	NA	Unknown
LNCA_21_P0001539	0.90203863	A	0.88437295	A	1.01232019220743	0	lncRNA	TCONS_00001571	NA	NA	NA	NA	XLOC_000909	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000909), lincRNA [TCONS_00001571]"	chr1:90097601-90086314	hs|1p22.2	Agilent_HUMAN_G3V2	TCONS_00001571	TCONS_00001571	chr1	 90086314	 90097601	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15201_PI429285431	2.3415992	A	2.09591	A	1.18565904519716	0	lncRNA	16869-1_{1..1963}	lnc-SALL1-6:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SALL1-6:2	chr16	 51558775	 51560737	-	lnc-SALL1-6	lnc-SALL1-6:2	XLOC_011938	linc-SALL1-5	NA	NA	NA	inter
CUST_10395_PI429285431	0.9147986	A	1.3076551	A	0.761620121863728	0	lncRNA	11922-1_{1..377}	lnc-UBL4B-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBL4B-1:5	chr1	110627540	110627916	+	lnc-UBL4B-1	lnc-UBL4B-1:5	XLOC_000340	linc-UBL4B	NA	NA	NA	inter
LNCA_21_P0007037	0.90408	A	0.88544226	A	1.01300250380122	0	lncRNA	AK128008	NA	AK128008	NA	Hs.576544	XLOC_008999	NA	NA	THC2622125	NA	"BROAD Institute lincRNA (XLOC_008999), lincRNA [TCONS_00018648]"	chr10:133664381-133664322	hs|10q26.3	Agilent_HUMAN_G3V2	AK128008	AK128008	chr10	133664322	133664381	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38411_PI429285431	4.198236	P	4.5953026	P	0.759400787422201	0	lncRNA	39441-1_{1..662}	n382369|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yys.1||-0.7700810|-0.1724679	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n382369|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001yys.1||-0.7700810|-0.1724679	chr15	 25418125	 25418786	+	NA	NA	NA	NA	SNRPN	NA	chr15:25408125-25437252	inter
CUST_30640_PI429285431	5.8377547	P	4.7178855	P	2.17327267928361	0	lncRNA	32422-1_{1..281}	n336004|X75692|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323544|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323544|1.5505100|-0.3117580	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336004|X75692|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323544|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323544|1.5505100|-0.3117580	chr6	 56382368	 56382648	-	NA	NA	NA	NA	DST	NA	chr6:56372368-56402316	inner
LNCA_21_P0014637	2.7775767	A	1.2516938	A	2.87962889516469	0	lncRNA	XR_110850	XR_110850	XR_110850	NA	Hs.596703	LOC100506778	uncharacterized LOC100506778	ENST00000451795	THC2534702	NA	"PREDICTED: Homo sapiens hypothetical LOC100506778 (LOC100506778), miscRNA [XR_110850]"	chr1:234508681-234508622	hs|1q42.2	Agilent_HUMAN_G3V2	XR_110850	XR_110850	chr1	234508622	234508681	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009286	0.90511656	A	0.8909179	A	1.00989035054891	0	lncRNA	TCONS_00025520	NA	NA	NA	NA	XLOC_012333	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012333), lincRNA [TCONS_00025520]"	chr17:77791749-77791808	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_00025520	TCONS_00025520	chr17	 77791749	 77791808	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002103	2.5367677	A	2.3830826	A	1.11240728666814	0	lncRNA	ENST00000413403	NA	NA	NA	NA	XLOC_002315	NA	ENST00000413403	NA	NA	"BROAD Institute lincRNA (XLOC_002315), lincRNA [TCONS_00003401]"	chr2:129821483-129821424	hs|2q14.3	Agilent_HUMAN_G3V2	ENST00000413403	ENST00000413403	chr2	129821424	129821483	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3232707	0.9825777	A	0.99965024	A	0.988235960861454	0	lncRNA	XR_111243	XR_111243	XR_111243	100129223	Hs.586788	LOC100129223	uncharacterized LOC100129223	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100129223 (LOC100129223), miscRNA [XR_111243]"	chr12:3595624-3595565	hs|12p13.32	Agilent_HUMAN_G3V2	XR_111243	XR_111243	chr12	  3595565	  3595624	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20679_PI429285431	1.7775111	A	1.5111246	A	1.20279143523088	0	lncRNA	22316-1_{1..494}	lnc-TRIM44-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TRIM44-3:1	chr11	 36010411	 36010904	+	lnc-TRIM44-3	lnc-TRIM44-3:1	ENSG00000255256.1	RP5-916O11.2	LDLRAD3	NA	chr11:36000411-36020557	inner
CUST_1521_PI429285431	8.381878	P	7.9417214	P	1.35675159056437	0	lncRNA	1508-1_{1..248}	"transcript_id ""ENST00000602890.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000602890.1"" | genecode_v17"	chr3	161146900	161147147	+	ENSG00000269888.1	ENST00000602890.1	RP11-3P17.5	RP11-3P17.5-001	NA	"hg19_refFlat_RPL23A:range=chr17:27047024-270508995'pad=0,hg19_refFlat_RPL23A:range=chr17:27047024-270508995'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50"	NA	inter
LNCA_33_P3239087	5.8921165	P	5.331257	P	1.47514778960562	0	lncRNA	XR_112085	XR_112085	XR_112085	   400728	Hs.568078	FAM87B	"family with sequence similarity 87, member B"	NA	THC2618367	GO:0016020|GO:0016021	"PREDICTED: Homo sapiens family with sequence similarity 87, member B (FAM87B), miscRNA [XR_112085]"	chr1:755136-755194	hs|1p36.33	Agilent_HUMAN_G3V2	XR_112085	XR_112085	chr1	   755136	   755194	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46818_PI429285431	6.4408426	P	6.9703684	P	0.692782407558185	0	lncRNA	50959-1_{1..3000}	"gi|392583924|ref|NR_052017.1| Homo sapiens mediator complex subunit 24 (MED24), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|392583924|ref|NR_052017.1| Homo sapiens mediator complex subunit 24 (MED24), transcript variant 4, non-coding RNA"	Chr17	 38175350	 38178349	-	9862	NR_052017.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004283	0.9100264	A	0.9169656	A	0.995201662066875	0	lncRNA	TCONS_00010056	NA	NA	NA	NA	XLOC_004504	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004504), lincRNA [TCONS_00010056]"	chr5:109247892-109247951	hs|5q21.3	Agilent_HUMAN_G3V2	TCONS_00010056	TCONS_00010056	chr5	109247892	109247951	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13720_PI429285431	2.403828	A	2.9845445	A	0.668631625739559	0	lncRNA	15359-1_{1..1234}	lnc-ARRDC3-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARRDC3-1:11	chr5	 90608895	 90610128	-	lnc-ARRDC3-1	lnc-ARRDC3-1:11	XLOC_004924	linc-LYSMD3-2	NA	"hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-28.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.10;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-63.40"	NA	inter
LNCA_21_P0014434	0.92294997	A	0.9063746	A	1.01155542499862	0	lncRNA	XR_109768	XR_109768	XR_109768	NA	Hs.729510	LOC100506901	uncharacterized LOC100506901	NA	THC2626312	NA	"PREDICTED: Homo sapiens hypothetical LOC100506901, transcript variant 1 (LOC100506901), miscRNA [XR_109768]"	chrX:102716221-102716280	hs|Xq22.2	Agilent_HUMAN_G3V2	XR_109768	XR_109768	chrX	102716221	102716280	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47078_PI429285431	8.392296	P	8.658943	P	0.831249227567369	0	lncRNA	51162-1_{1..2156}	"gi|224809417|ref|NR_027308.1| Homo sapiens MEF2BNB-MEF2B readthrough (MEF2BNB-MEF2B), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|224809417|ref|NR_027308.1| Homo sapiens MEF2BNB-MEF2B readthrough (MEF2BNB-MEF2B), transcript variant 3, non-coding RNA"	Chr19	 19256376	 19258531	-	4207	NR_027308.1	NA	NA	NA	NA	NA	inter
CUST_42626_PI429285431	4.491534	P	5.333429	P	0.557910264647223	0	lncRNA	45494-1_{1..143}	ENST00000458953 ncrna:snoRNA chromosome:GRCh37:15:92960777:92960919:1 gene:ENSG00000239197 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000458953 ncrna:snoRNA chromosome:GRCh37:15:92960777:92960919:1 gene:ENSG00000239197 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 92960777	 92960919	+	ENSG00000239197	ENST00000458953	NA	NA	ST8SIA2	NA	chr15:92950777-92970919	inner
LNCA_21_P0004455	7.384493	P	7.477521	P	0.93755290014035	0	lncRNA	TCONS_00010522	NA	NA	NA	NA	XLOC_005041	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005041), lincRNA [TCONS_00010522]"	chr5:144850169-144850110	hs|5q32	Agilent_HUMAN_G3V2	TCONS_00010522	TCONS_00010522	chr5	144850110	144850169	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31454_PI429285431	0.92520416	A	0.9281134	A	0.997985500330099	0	lncRNA	33221-1_{1..1198}	n337925|BC021738|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|309|NULL|2.7311500|-0.1588998	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n337925|BC021738|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|309|NULL|2.7311500|-0.1588998	chr22	 17602484	 17603681	+	NA	NA	NA	NA	CECR5	NA	chr22:17618410-17622994	inter
CUST_48364_PI429285431	0.91791403	A	0.9235563	A	0.996096714158953	0	lncRNA	52219-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00000383 range=chr1:89873172-89893634 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000383 range=chr1:89873172-89893634 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 89873172	 89876171	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42954_PI429285431	6.9516187	P	7.2244635	P	0.827685850788373	0	lncRNA	46079-1_{1..91}	ENST00000408314 ncrna:snoRNA chromosome:GRCh37:19:51302699:51302789:-1 gene:ENSG00000221241 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408314 ncrna:snoRNA chromosome:GRCh37:19:51302699:51302789:-1 gene:ENSG00000221241 gene_biotype:snoRNA transcript_biotype:snoRNA	chr19	 51302699	 51302789	-	ENSG00000221241	ENST00000408314	NA	NA	ACPT	NA	chr19:51293672-51298481	inter
LNCA_21_P0003961	0.89793265	A	0.9016454	A	0.997429826371891	0	lncRNA	ENST00000510622	NA	NA	NA	NA	XLOC_004275	NA	ENST00000510622	NA	NA	"BROAD Institute lincRNA (XLOC_004275), lincRNA [TCONS_00009341]"	chr5:6886835-6886894	hs|5p15.31	Agilent_HUMAN_G3V2	ENST00000510622	ENST00000510622	chr5	  6886835	  6886894	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001910	0.89824986	A	0.88525563	A	1.00904759819188	0	lncRNA	ENST00000432984	NA	NA	NA	NA	XLOC_001645	NA	ENST00000432984	NA	NA	"BROAD Institute lincRNA (XLOC_001645), lincRNA [TCONS_00002991]"	chr2:121940077-121940136	hs|2q14.2	Agilent_HUMAN_G3V2	ENST00000432984	ENST00000432984	chr2	121940077	121940136	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002450	3.1378026	P	3.604568	P	0.723585097226555	0	lncRNA	TCONS_00004279	NA	NA	NA	NA	XLOC_002117	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002117), lincRNA [TCONS_00004279]"	chr2:62839018-62838959	hs|2p15	Agilent_HUMAN_G3V2	TCONS_00004279	TCONS_00004279	chr2	 62838959	 62839018	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43178_PI429285431	3.7420642	P	3.8939052	P	0.900101124833796	0	lncRNA	47992-1_{1..716}	ENST00000585495 havana:sense_intronic chromosome:GRCh37:17:59460762:59462041:1 gene:ENSG00000266934 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000585495 havana:sense_intronic chromosome:GRCh37:17:59460762:59462041:1 gene:ENSG00000266934 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr17	 59460762	 59461477	+	ENSG00000266934	ENST00000585495	NA	NA	BCAS3	NA	chr17:59450762-59470199	inner
LNCA_21_P0002957	0.90642303	A	0.8875195	A	1.01318914805464	0	lncRNA	TCONS_00006013	NA	NA	NA	NA	XLOC_002639	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002639), lincRNA [TCONS_00006013]"	chr3:47579035-47579094	hs|3p21.31	Agilent_HUMAN_G3V2	TCONS_00006013	TCONS_00006013	chr3	 47579035	 47579094	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49450_PI429285431	2.182099	A	0.9288077	A	2.38384643198664	0	lncRNA	53250-1_{1..332}	hg19_lincRNAsTranscripts_TCONS_l2_00024003 range=chr6:5892989-5907354 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00024003 range=chr6:5892989-5907354 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr6	  5892989	  5893320	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_43656_PI429285431	1.800933	A	3.1260867	A	0.399106671396939	0	lncRNA	48412-1_{1..2251}	"gi|310118763|ref|XR_108302.1| PREDICTED: Homo sapiens INM04 (LOC100128751), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118763|ref|XR_108302.1| PREDICTED: Homo sapiens INM04 (LOC100128751), misc_RNA"	NA	NA	NA	NA	NA	XR_108302.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014869	1.4705914	A	2.2079444	A	0.599838904073597	0	lncRNA	XR_132764	XR_132764	XR_132764	NA	NA	LOC100652893	uncharacterized LOC100652893	ENST00000547040	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652893 (LOC100652893), miscRNA [XR_132764]"	chr12:75435171-75435230	hs|12q21.1	Agilent_HUMAN_G3V2	XR_132764	XR_132764	chr12	 75435171	 75435230	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014679	0.98333657	A	1.0010866	A	0.987771993922239	0	lncRNA	XR_111377	XR_111377	XR_111377	NA	Hs.536364	FRY-AS1	FRY antisense RNA 1 (non-protein coding)	NA	THC2548945	NA	"PREDICTED: Homo sapiens FRY antisense RNA 1 (non-protein coding) (FRY-AS1), miscRNA [XR_111377]"	chr13:32598600-32598541	hs|13q13.1	Agilent_HUMAN_G3V2	XR_111377	XR_111377	chr13	 32598541	 32598600	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009713	0.9835894	A	1.0035255	A	0.986276387783106	0	lncRNA	TCONS_00026997	NA	NA	NA	NA	XLOC_013044	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013044), lincRNA [TCONS_00026997]"	chr19:34286987-34287371	hs|19q13.11	Agilent_HUMAN_G3V2	TCONS_00026997	TCONS_00026997	chr19	 34286987	 34287371	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26464_PI429285431	1.7350261	A	1.6591938	A	1.05396890200033	0	lncRNA	27972-1_{1..436}	lnc-ERAL1-4:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ERAL1-4:3	chr17	 27256736	 27257171	+	lnc-ERAL1-4	lnc-ERAL1-4:3	ENSG00000265845.1	RP11-20B24.5	PHF12	NA	chr17:27246736-27266983	inner
LNCA_21_P0008204	2.6406329	A	2.7571502	A	0.922411688769134	0	lncRNA	TCONS_00022093	NA	NA	NA	NA	XLOC_010704	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010704), lincRNA [TCONS_00022093]"	chr13:98716457-98716398	hs|13q32.2	Agilent_HUMAN_G3V2	TCONS_00022093	TCONS_00022093	chr13	 98716398	 98716457	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003669	0.9153592	A	0.9253524	A	0.993097176291057	0	lncRNA	TCONS_00008304	NA	NA	NA	NA	XLOC_003754	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003754), lincRNA [TCONS_00008304]"	chr4:156983057-156983116	hs|4q32.1	Agilent_HUMAN_G3V2	TCONS_00008304	TCONS_00008304	chr4	156983057	156983116	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002300	0.9084634	A	0.9145517	A	0.995788804079053	0	lncRNA	TCONS_00003905	NA	NA	NA	NA	XLOC_001710	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001710), lincRNA [TCONS_00003905]"	chr2:153033014-153039320	hs|2q23.3	Agilent_HUMAN_G3V2	TCONS_00003905	TCONS_00003905	chr2	153033014	153039320	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36796_PI429285431	1.1092943	A	1.0413963	A	1.04818836491851	0	lncRNA	37968-1_{1..274}	n345275|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_824|NULL|-1.3712500|-0.1831216	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345275|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_824|NULL|-1.3712500|-0.1831216	chr14	 77489475	 77489748	+	NA	NA	NA	NA	IRF2BPL	NA	chr14:77490886-77495034	inter
LNCA_21_P0013071	4.9485826	P	5.847358	P	0.536341800060723	0	lncRNA	TCONS_l2_00024674	NA	NA	NA	NA	XLOC_l2_012925	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012925), lincRNA [TCONS_l2_00024674]"	chr6:26987339-26960361	hs|6p22.2	Agilent_HUMAN_G3V2	TCONS_l2_00024674	TCONS_l2_00024674	chr6	 26960361	 26987339	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15812_PI429285431	3.6142697	P	4.3250356	P	0.610995686469722	0	lncRNA	17502-1_{1..496}	lnc-DAPK2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DAPK2-1:1	chr15	 64168439	 64168934	-	lnc-DAPK2-1	lnc-DAPK2-1:1	XLOC_011502	linc-HERC1	NA	"hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-18.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.30;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-12.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10"	NA	inter
LNCA_21_P0003983	0.89971983	A	0.8844104	A	1.01066819189365	0	lncRNA	ENST00000511054	NA	NA	NA	NA	XLOC_004331	NA	ENST00000511054	THC2719188	NA	"BROAD Institute lincRNA (XLOC_004331), lincRNA [TCONS_00009376]"	chr5:33009308-33009367	hs|5p13.3	Agilent_HUMAN_G3V2	ENST00000511054	ENST00000511054	chr5	 33009308	 33009367	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004218	0.89998496	A	0.8843335	A	1.01090782661297	0	lncRNA	TCONS_00009857	NA	NA	NA	NA	XLOC_004270	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004270), lincRNA [TCONS_00009857]"	chr5:5701909-5701968	hs|5p15.32	Agilent_HUMAN_G3V2	TCONS_00009857	TCONS_00009857	chr5	  5701909	  5701968	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00810043	1.1824311	A	1.5320727	A	0.784779031589172	0	lncRNA	XR_108650	XR_108650	XR_108650	NA	Hs.656652	FLJ38717	FLJ38717 protein	NA	THC2479250	NA	"PREDICTED: Homo sapiens FLJ38717 protein (FLJ38717), miscRNA [XR_108650]"	chr6:42752954-42753013	hs|6p21.1	Agilent_HUMAN_G3V2	XR_108650	XR_108650	chr6	 42752954	 42753013	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4780_PI429285431	2.2503715	A	2.018795	A	1.17411726104639	0	lncRNA	4724-1_{1..500}	"transcript_id ""ENST00000557350.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000557350.1"" | genecode_v17"	chr14	 39572344	 39572843	+	ENSG00000258651.1	ENST00000557350.1	RP11-545M17.1	RP11-545M17.1-001	SIP1	NA	chr14:39577399-39583016	inner
CUST_6374_PI429285431	6.947239	P	6.8959665	P	1.03617846116625	0	lncRNA	6300-1_{1..775}	"transcript_id ""ENST00000596643.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000596643.1"" | genecode_v17"	chr19	 17599799	 17600573	-	ENSG00000269439.1	ENST00000596643.1	CTD-3131K8.2	CTD-3131K8.2-003	SLC27A1	"hg19_refFlat_SLC27A1:range=chr19:17581350-176154215'pad=0,hg19_refFlat_SLC27A1:range=chr19:17581350-176154215'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_PGLS:range=chr19:17622482-176318905'pad=0,hg19_refFlat_PGLS:range=chr19:17622482-176318905'pad=0 3'pad=0 strand=+ repeatMasking=none,-106.10chr19:17589799-17616977"	NA	inner
CUST_22048_PI429285431	0.9120033	A	0.9038343	A	1.00567838054832	0	lncRNA	23656-1_{1..568}	lnc-CHCHD7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHCHD7-1:2	chr8	 57439540	 57440107	+	lnc-CHCHD7-1	lnc-CHCHD7-1:2	ENSG00000254254.1	RP11-17A4.2	NA	NA	NA	inter
CUST_31306_PI429285431	1.0889995	A	0.90819514	A	1.13351568933718	0	lncRNA	33090-1_{1..1725}	n337770|AK094536|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|152|NULL|-1.2708900|-0.3526010	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337770|AK094536|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|152|NULL|-1.2708900|-0.3526010	chr1	 23404834	 23406558	-	NA	NA	NA	NA	LUZP1	"hg19_refFlat_KDM1A:range=chr1:23346090-234098575'pad=0,hg19_refFlat_KDM1A:range=chr1:23346090-234098575'pad=0 3'pad=0 strand=+ repeatMasking=none,-95.20chr1:23410516-23416532"	NA	inner
LNCA_21_P0013160	2.4991925	A	3.052261	P	0.681568941583045	0	lncRNA	ENST00000454588	NA	NA	NA	NA	XLOC_l2_013149	NA	ENST00000454588	THC2699591	NA	"BROAD Institute lincRNA (XLOC_l2_013149), lincRNA [TCONS_l2_00025502]"	chr6:143363426-143363367	hs|6q24.2	Agilent_HUMAN_G3V2	ENST00000454588	ENST00000454588	chr6	143363367	143363426	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22253_PI429285431	3.137142	A	3.0444188	A	1.06638116196526	0	lncRNA	23854-1_{1..585}	lnc-SEMA4D-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SEMA4D-2:1	chr9	 91724395	 91724979	-	lnc-SEMA4D-2	lnc-SEMA4D-2:1	ENSG00000224945.1	RP11-82L18.2	SHC3	NA	chr9:91714395-91734849	inner
LNCA_21_P0007553	1.9258672	A	2.5901377	A	0.631007693348307	0	lncRNA	TCONS_00020409	NA	NA	NA	NA	XLOC_009736	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009736), lincRNA [TCONS_00020409]"	chr12:48853015-48853074	hs|12q13.11	Agilent_HUMAN_G3V2	TCONS_00020409	TCONS_00020409	chr12	 48853015	 48853074	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006943	0.8977561	A	0.89045215	A	1.00507554953213	0	lncRNA	TCONS_00018398	NA	NA	NA	NA	XLOC_008683	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008683), lincRNA [TCONS_00018398]"	chr10:1202457-1202398	hs|10p15.3	Agilent_HUMAN_G3V2	TCONS_00018398	TCONS_00018398	chr10	  1202398	  1202457	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_75_PI429285431	7.349846	P	6.534819	P	1.75933107737192	0	lncRNA	70-1_{1..3000}	"transcript_id ""ENST00000448136.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000448136.1"" | genecode_v17"	chr17	 74553860	 74556859	+	ENSG00000163597.9	ENST00000448136.1	SNHG16	SNHG16-001	ST6GALNAC2	"hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80chr17:74561461-74571430"	NA	inter
CUST_3913_PI429285431	1.0805682	A	1.0305393	A	1.03528566242793	0	lncRNA	3883-1_{1..477}	"transcript_id ""ENST00000531882.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000531882.1"" | genecode_v17"	chr11	 38639879	 38640355	-	ENSG00000255175.1	ENST00000531882.1	RP11-277K23.1	RP11-277K23.1-001	NA	NA	NA	inter
LNCA_33_P3408962	6.038657	P	6.2154093	P	0.884692317378456	0	lncRNA	XR_110352	XR_110352	XR_110352	   283401	Hs.709845	FLJ33996	uncharacterized protein FLJ33996	NA	THC2475169	NA	"PREDICTED: Homo sapiens hypothetical protein FLJ33996 (FLJ33996), miscRNA [XR_110352]"	chr12:52205200-52205259	hs|12q13.13	Agilent_HUMAN_G3V2	XR_110352	XR_110352	chr12	 52205200	 52205259	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32576_PI429285431	4.692387	P	4.78589	P	0.937244266430232	0	lncRNA	34239-1_{1..1511}	n339194|CR625066|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1625|NULL|-0.9063140|-0.1919231	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339194|CR625066|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1625|NULL|-0.9063140|-0.1919231	chr2	239334019	239335529	-	NA	NA	NA	NA	ASB1	NA	chr2:239335626-239345530	inter
CUST_329_PI429285431	3.177073	P	2.9415836	A	1.17730604257809	0	lncRNA	322-1_{1..1994}	"transcript_id ""ENST00000435311.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435311.1"" | genecode_v17"	chr1	 96719625	 96721618	-	ENSG00000231987.1	ENST00000435311.1	RP5-898J17.1	RP5-898J17.1-001	NA	"hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0,hg19_refFlat_CCDC148:range=chr2:159145301-1591971855'pad=0 3'pad=0 strand=- repeatMasking=none,-65.80"	NA	inter
LNCA_21_P0011733	1.8886596	A	0.93026	A	1.94315313424206	0	lncRNA	XR_109588	XR_109588	XR_109588	NA	NA	LOC100505851	uncharacterized LOC100505851	NA	THC2687904	NA	"PREDICTED: Homo sapiens hypothetical LOC100505851 (LOC100505851), miscRNA [XR_109588]"	chr19:24132615-24132556	hs|19p12	Agilent_HUMAN_G3V2	XR_109588	XR_109588	chr19	 24132556	 24132615	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30206_PI429285431	4.2530565	P	4.8191657	P	0.675435915459057	0	lncRNA	31981-1_{1..263}	n335023|AJ537510|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248567|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248567|1.1606300|-0.1566047	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335023|AJ537510|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000248567|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000248567|1.1606300|-0.1566047	chr12	  2622090	  2622352	+	NA	NA	NA	NA	CACNA1C	NA	chr12:2612090-2685675	inner
CUST_44935_PI429285431	0.99965024	A	1.3159926	A	0.803103392993873	0	lncRNA	49447-1_{1..614}	"gi|393185898|ref|NR_072982.1| Homo sapiens uncharacterized LOC255031 (FLJ35390), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|393185898|ref|NR_072982.1| Homo sapiens uncharacterized LOC255031 (FLJ35390), transcript variant 4, non-coding RNA"	Chr7	 44078648	 44079261	+	255031	NR_072982.1	NA	NA	NA	"hg19_refFlat_RASA4:range=chr7:102223218-1022571365'pad=0,hg19_refFlat_RASA4:range=chr7:102223218-1022571365'pad=0 3'pad=0 strand=- repeatMasking=none,-103.50"	NA	inter
LNCA_21_P0009083	0.89787185	A	0.89179605	A	1.00422030414633	0	lncRNA	TCONS_00024763	NA	NA	NA	NA	XLOC_012044	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012044), lincRNA [TCONS_00024763]"	chr16:86255820-86255761	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024763	TCONS_00024763	chr16	 86255761	 86255820	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16532_PI429285431	4.3156548	P	3.7953634	P	1.4342449119781	0	lncRNA	18231-1_{1..1371}	lnc-AC092117.1-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-AC092117.1-1:5	chr16	  2794456	  2795826	-	lnc-AC092117.1-1	lnc-AC092117.1-1:5	XLOC_011855	linc-PRSS27	SRRM2	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.20chr16:2802330-2804798"	NA	inter
LNCA_21_P0001102	0.8980403	A	0.8865142	A	1.00802128320591	0	lncRNA	ENST00000447908	NA	NA	NA	NA	XLOC_000710	NA	ENST00000447908	NA	NA	"BROAD Institute lincRNA (XLOC_000710), lincRNA [TCONS_00000472]"	chr1:14675512-14675453	hs|1p36.21	Agilent_HUMAN_G3V2	ENST00000447908	ENST00000447908	chr1	 14675453	 14675512	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16558_PI429285431	2.7475066	A	3.746222	P	0.500445406703466	0	lncRNA	18259-1_{1..280}	lnc-PLS3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PLS3-1:2	chrX	114959173	114959452	+	lnc-PLS3-1	lnc-PLS3-1:2	XLOC_008049	linc-AGTR2-2	NA	NA	NA	inter
CUST_129_PI429285431	7.2466946	P	7.0109897	P	1.17748191370444	0	lncRNA	121-1_{1..504}	"transcript_id ""ENST00000432963.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000432963.1"" | genecode_v17"	chr1	   803620	   804123	-	ENSG00000230368.2	ENST00000432963.1	FAM41C	FAM41C-003	NA	NA	NA	inter
LNCA_21_P0008931	0.90627843	A	0.88709885	A	1.01338303353742	0	lncRNA	TCONS_00024386	NA	NA	NA	NA	XLOC_011713	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011713), lincRNA [TCONS_00024386]"	chr16:49203870-49203929	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00024386	TCONS_00024386	chr16	 49203870	 49203929	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001442	0.9074321	A	0.888586	A	1.01314881638856	0	lncRNA	TCONS_00001333	NA	NA	NA	NA	XLOC_000628	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000628), lincRNA [TCONS_00001333]"	chr1:236121129-236121188	hs|1q42.3	Agilent_HUMAN_G3V2	TCONS_00001333	TCONS_00001333	chr1	236121129	236121188	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12526_PI429285431	1.0272193	A	0.90082353	A	1.09156328111279	0	lncRNA	14137-1_{1..230}	lnc-ZIC4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZIC4-1:1	chr3	147450089	147450318	-	lnc-ZIC4-1	lnc-ZIC4-1:1	XLOC_003273	linc-ZIC4-1	NA	NA	NA	inter
LNCA_21_P0006562	0.90317714	A	0.8915971	A	1.00805897217201	0	lncRNA	TCONS_00017420	NA	NA	NA	NA	XLOC_007971	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007971), lincRNA [TCONS_00017420]"	chrX:46990683-46990742	hs|Xp11.23	Agilent_HUMAN_G3V2	TCONS_00017420	TCONS_00017420	chrX	 46990683	 46990742	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014947	0.9796957	A	2.272173	A	0.408249408323227	0	lncRNA	ENST00000541151	XR_133567	XR_133567	NA	Hs.638368	LOC100507404	NA	ENST00000541151	THC2484554	NA	"PREDICTED: Homo sapiens hypothetical LOC100507404 (LOC100507404), miscRNA [XR_133567]"	chrX:154697262-154697321	hs|Xq28	Agilent_HUMAN_G3V2	ENST00000541151	ENST00000541151	chrX	154697262	154697321	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007530	2.6629121	A	2.3157532	A	1.2720531043398	0	lncRNA	TCONS_00020350	NA	NA	NA	NA	XLOC_009681	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009681), lincRNA [TCONS_00020350]"	chr12:19706828-19706887	hs|12p12.3	Agilent_HUMAN_G3V2	TCONS_00020350	TCONS_00020350	chr12	 19706828	 19706887	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007601	0.96191514	A	1.0095602	A	0.967514333687941	0	lncRNA	TCONS_00020512	NA	NA	NA	NA	XLOC_009829	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009829), lincRNA [TCONS_00020512]"	chr12:90494554-90494613	hs|12q21.33	Agilent_HUMAN_G3V2	TCONS_00020512	TCONS_00020512	chr12	 90494554	 90494613	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43474_PI429285431	6.2120295	P	4.586946	P	3.08460017548941	0	lncRNA	48274-2_{3001..4719}	"gi|271397278|ref|NR_033142.1| Homo sapiens transmembrane protein 48 (TMEM48), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|271397278|ref|NR_033142.1| Homo sapiens transmembrane protein 48 (TMEM48), transcript variant 3, non-coding RNA"	Chr1	 54234133	 54235851	-	55706	NR_033142.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0013693	2.9550223	A	3.0049756	A	0.96596759676412	0	lncRNA	ENST00000449009	NA	NA	NA	NA	XLOC_l2_014757	NA	ENST00000449009	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014757), lincRNA [TCONS_l2_00029709]"	chr9:35480519-35480578	hs|9p13.3	Agilent_HUMAN_G3V2	ENST00000449009	ENST00000449009	chr9	 35480519	 35480578	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007298	2.4387326	A	1.8578917	A	1.49572080160101	0	lncRNA	TCONS_00019532	NA	NA	NA	NA	XLOC_009327	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009327), lincRNA [TCONS_00019532]"	chr11:128163301-128163360	hs|11q24.3	Agilent_HUMAN_G3V2	TCONS_00019532	TCONS_00019532	chr11	128163301	128163360	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007730	0.9192677	A	0.9308636	A	0.991994550270729	0	lncRNA	TCONS_00020857	NA	NA	NA	NA	XLOC_010140	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010140), lincRNA [TCONS_00020857]"	chr12:82532536-82532477	hs|12q21.31	Agilent_HUMAN_G3V2	TCONS_00020857	TCONS_00020857	chr12	 82532477	 82532536	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35328_PI429285431	11.34171	P	11.477051	P	0.910454610202821	0	lncRNA	36737-1_{1..1723}	n342366|BC041478|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4858|NULL|-1.1523000|-0.2415341	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n342366|BC041478|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4858|NULL|-1.1523000|-0.2415341	chr19	 37742827	 37744549	+	NA	NA	NA	NA	ZNF383	NA	chr19:37732827-37734574	inter
CUST_4882_PI429285431	4.502143	P	4.62941	P	0.915564226994053	0	lncRNA	4825-1_{1..721}	"transcript_id ""ENST00000553621.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000553621.1"" | genecode_v17"	chr14	 71679350	 71680070	+	ENSG00000258517.1	ENST00000553621.1	RP6-91H8.1	RP6-91H8.1-001	NA	NA	NA	inter
LNCA_21_P0007306	0.90682167	A	1.3481061	A	0.736478630467887	0	lncRNA	TCONS_00019547	NA	NA	NA	NA	XLOC_009344	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009344), lincRNA [TCONS_00019547]"	chr11:134352781-134352840	hs|11q25	Agilent_HUMAN_G3V2	TCONS_00019547	TCONS_00019547	chr11	134352781	134352840	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1290_PI429285431	2.3009794	A	2.7491307	A	0.732981504470892	0	lncRNA	1280-1_{1..585}	"transcript_id ""ENST00000443087.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443087.1"" | genecode_v17"	chr3	  5297220	  5297804	-	ENSG00000230944.1	ENST00000443087.1	AC026202.5	AC026202.5-001	NA	NA	NA	inter
LNCA_21_P0010330	0.8979235	A	0.8878548	A	1.00700350162753	0	lncRNA	ENST00000426467	XR_109755	XR_109755	NA	Hs.729132	XLOC_014197	NA	ENST00000426467	THC2629924	NA	"PREDICTED: Homo sapiens hypothetical LOC100507657 (LOC100507657), miscRNA [XR_109755]"	chr22:27710983-27712796	hs|22q12.1	Agilent_HUMAN_G3V2	ENST00000426467	ENST00000426467	chr22	 27710983	 27712796	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001213	2.309699	A	3.0993326	P	0.578490992150026	0	lncRNA	TCONS_00000712	NA	NA	NA	NA	XLOC_001147	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001147), lincRNA [TCONS_00000712]"	chr1:198776736-198776677	hs|1q32.1	Agilent_HUMAN_G3V2	TCONS_00000712	TCONS_00000712	chr1	198776677	198776736	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4293_PI429285431	2.6001265	A	2.9701934	A	0.773746616112186	0	lncRNA	4248-1_{1..1072}	"transcript_id ""ENST00000546198.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546198.1"" | genecode_v17"	chr12	 65951914	 65952985	-	ENSG00000250748.2	ENST00000546198.1	RP11-230G5.2	RP11-230G5.2-004	NA	NA	NA	inter
CUST_905_PI429285431	7.0243635	P	7.362769	P	0.7909149665367	0	lncRNA	894-1_{1..492}	"transcript_id ""ENST00000597541.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000597541.1"" | genecode_v17"	chr2	 65669453	 65669944	-	ENSG00000234255.4	ENST00000597541.1	AC012370.3	AC012370.3-002	SPRED2	NA	chr2:65659453-65659656	inter
CUST_48658_PI429285431	0.90685076	A	0.88953006	A	1.0120781532047	0	lncRNA	52503-2_{3001..4797}	hg19_lincRNAsTranscripts_TCONS_l2_00013803 range=chr2:96192905-96199699 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013803 range=chr2:96192905-96199699 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 96195905	 96197701	+	NA	NA	NA	NA	TRIM43	"hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70chr2:96191094-96209699"	NA	inter
CUST_4529_PI429285431	2.6194403	A	2.365954	A	1.19208433163381	0	lncRNA	4477-1_{1..1277}	"transcript_id ""ENST00000542980.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000542980.1"" | genecode_v17"	chr12	131474683	131475959	-	ENSG00000256151.1	ENST00000542980.1	RP11-76C10.5	RP11-76C10.5-001	GPR133	"hg19_refFlat_GPR133:range=chr12:131439011-1316238085'pad=0,hg19_refFlat_GPR133:range=chr12:131439011-1316238085'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00chr12:131464683-131488521"	NA	inner
LNCA_21_P0006911	8.518854	P	8.939306	P	0.747190490974164	0	lncRNA	TCONS_00018332	NA	NA	NA	NA	XLOC_008610	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008610), lincRNA [TCONS_00018332]"	chr10:110778615-110778674	hs|10q25.1	Agilent_HUMAN_G3V2	TCONS_00018332	TCONS_00018332	chr10	110778615	110778674	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19737_PI429285431	6.6166677	P	6.7105618	P	0.936990223446883	0	lncRNA	21395-1_{1..188}	lnc-POFUT2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-POFUT2-3:1	chr21	 46799448	 46799635	-	lnc-POFUT2-3	lnc-POFUT2-3:1	ENSG00000228355.1	BX322559.3	NA	NA	NA	inter
CUST_1539_PI429285431	0.91612136	A	1.2546915	A	0.790824712666991	0	lncRNA	1526-1_{1..1075}	"transcript_id ""ENST00000496693.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000496693.1"" | genecode_v17"	chr3	165266626	165267700	+	ENSG00000244128.1	ENST00000496693.1	RP11-85M11.2	RP11-85M11.2-004	NA	NA	NA	inter
CUST_31235_PI429285431	0.9124447	A	0.9088691	A	1.00248149087324	0	lncRNA	33024-2_{3001..3101}	n337683|AK094982|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|65|NULL|-0.9053560|-0.2360232	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337683|AK094982|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|65|NULL|-0.9053560|-0.2360232	chr15	 31770606	 31770706	-	NA	NA	NA	NA	OTUD7A	NA	chr15:31775329-31780705	inter
CUST_38933_PI429285431	4.669989	P	5.1549273	P	0.714527627549515	0	lncRNA	39922-1_{1..2605}	n385064|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003sjv.2||-0.6374490|-0.1767659	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385064|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003sjv.2||-0.6374490|-0.1767659	chr7	  1064140	  1066744	-	NA	NA	NA	NA	C7orf50	NA	chr7:1054140-1077975	inner
CUST_20202_PI429285431	0.9126558	A	0.8948215	A	1.01243851756504	0	lncRNA	21846-1_{1..199}	lnc-RP11-408E5.4.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-408E5.4.1-2:1	chr13	 19602715	 19602913	+	lnc-RP11-408E5.4.1-2	lnc-RP11-408E5.4.1-2:1	ENSG00000226619.1	RP11-301J16.7	NA	NA	NA	inter
LNCA_21_P0011302	0.90012467	A	0.89128566	A	1.006145541689	0	lncRNA	TCONS_l2_00008496	NA	NA	NA	NA	XLOC_l2_004596	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004596), lincRNA [TCONS_l2_00008496]"	chr15:29043476-29044551	hs|15q13.1	Agilent_HUMAN_G3V2	TCONS_l2_00008496	TCONS_l2_00008496	chr15	 29043476	 29044551	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009231	3.3977063	P	3.7172718	P	0.801311174101346	0	lncRNA	TCONS_00025337	NA	NA	NA	NA	XLOC_012150	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012150), lincRNA [TCONS_00025337]"	chr17:25665574-25665633	hs|17q11.1	Agilent_HUMAN_G3V2	TCONS_00025337	TCONS_00025337	chr17	 25665574	 25665633	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003283	2.0795836	A	3.3810182	P	0.405722551500438	0	lncRNA	TCONS_00007152	NA	NA	NA	NA	XLOC_003102	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003102), lincRNA [TCONS_00007152]"	chr3:43392851-43392792	hs|3p22.1	Agilent_HUMAN_G3V2	TCONS_00007152	TCONS_00007152	chr3	 43392792	 43392851	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16275_PI429285431	0.92782193	A	0.9202283	A	1.00527737979359	0	lncRNA	17979-1_{1..3000}	lnc-SLC25A32-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-SLC25A32-3:3	chr8	104511198	104514197	-	lnc-SLC25A32-3	lnc-SLC25A32-3:3	XLOC_007177	linc-SLC25A32-1	RIMS2	"hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20chr8:104512976-104521722"	NA	inter
LNCA_21_P0001468	4.1759906	P	4.5328684	P	0.780852630042977	0	lncRNA	TCONS_00001392	NA	NA	NA	NA	XLOC_000709	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000709), lincRNA [TCONS_00001392]"	chr1:14609371-14609312	hs|1p36.21	Agilent_HUMAN_G3V2	TCONS_00001392	TCONS_00001392	chr1	 14609312	 14609371	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014306	5.416651	P	6.3552146	P	0.521752097391546	0	lncRNA	XR_109234	XR_109234	XR_109234	NA	NA	LOC100507047	uncharacterized LOC100507047	NA	THC2606891	NA	"PREDICTED: Homo sapiens hypothetical LOC100507047 (LOC100507047), miscRNA [XR_109234]"	chr16:589802-589861	hs|16p13.3	Agilent_HUMAN_G3V2	XR_109234	XR_109234	chr16	   589802	   589861	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009373	4.3357124	P	3.8177958	P	1.43188596366481	0	lncRNA	TCONS_00025791	NA	NA	NA	NA	XLOC_012065	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012065), lincRNA [TCONS_00025791]"	chr17:000056542-000056601	hs|17p13.3	Agilent_HUMAN_G3V2	TCONS_00025791	TCONS_00025791	chr17	    56542	    56601	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12354_PI429285431	0.9203313	A	0.9267488	A	0.995561606877336	0	lncRNA	13966-1_{1..693}	lnc-TSPY4-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TSPY4-3:1	chrY	  8513376	  8514068	+	lnc-TSPY4-3	lnc-TSPY4-3:1	XLOC_008286	linc-TSPY4-3	NA	NA	NA	inter
LNCA_21_P0002261	0.89816266	A	0.89198023	A	1.00429452909703	0	lncRNA	TCONS_00003800	NA	NA	NA	NA	XLOC_001595	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001595), lincRNA [TCONS_00003800]"	chr2:102605400-102605459	hs|2q11.2	Agilent_HUMAN_G3V2	TCONS_00003800	TCONS_00003800	chr2	102605400	102605459	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014097	0.8980262	A	0.98770356	A	0.939732884765197	0	lncRNA	XR_108424	XR_108424	XR_108424	NA	NA	LOC100507380	uncharacterized LOC100507380	NA	THC2529005	NA	"PREDICTED: Homo sapiens hypothetical LOC100507380 (LOC100507380), miscRNA [XR_108424]"	chr2:206982965-206983024	hs|2q33.3	Agilent_HUMAN_G3V2	XR_108424	XR_108424	chr2	206982965	206983024	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19287_PI429285431	3.149751	P	3.7456937	P	0.661611996896524	0	lncRNA	20955-1_{1..734}	lnc-RPS25-1:13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RPS25-1:13	chr11	118899932	118900665	-	lnc-RPS25-1	lnc-RPS25-1:13	ENSG00000137700.10	SLC37A4	SLC37A4	NA	chr11:118895061-118901616	inner
LNCA_21_P0010413	0.90146685	A	0.88466996	A	1.01171075717593	0	lncRNA	THC2733117	NA	NA	NA	NA	XLOC_014219	NA	NA	THC2733117	NA	"BROAD Institute lincRNA (XLOC_014219), lincRNA [TCONS_00029795]"	chr22:035850703-035850762	hs|22q12.3	Agilent_HUMAN_G3V2	THC2733117	THC2733117	chr22	 35850703	 35850762	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19006_PI429285431	0.9125662	A	0.89186835	A	1.01445006356973	0	lncRNA	20696-1_{1..562}	lnc-SMUG1-7:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SMUG1-7:4	chr12	 54361053	 54361614	-	lnc-SMUG1-7	lnc-SMUG1-7:4	ENSG00000228630	HOTAIR	HOXC11	NA	chr12:54366910-54370203	inter
LNCA_21_P0006630	0.9079883	A	0.8909292	A	1.01189465244068	0	lncRNA	ENST00000435539	NA	NA	NA	NA	XLOC_008339	NA	ENST00000435539	THC2729505	NA	"BROAD Institute lincRNA (XLOC_008339), lincRNA [TCONS_00017756]"	chr10:2123004-2123063	hs|10p15.3	Agilent_HUMAN_G3V2	ENST00000435539	ENST00000435539	chr10	  2123004	  2123063	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012741	0.9074175	A	0.8914127	A	1.01115544506753	0	lncRNA	AK123527	NA	AK123527	NA	Hs.635499	XLOC_l2_010831	NA	NA	THC2514726	NA	"BROAD Institute lincRNA (XLOC_l2_010831), lincRNA [TCONS_l2_00020759]"	chr4:129435720-129435779	hs|4q28.2	Agilent_HUMAN_G3V2	AK123527	AK123527	chr4	129435720	129435779	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00319588	1.0452824	A	2.6051195	A	0.339189378819278	0	lncRNA	TCONS_00007223	NA	NA	NA	NA	XLOC_003202	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003202), lincRNA [TCONS_00007223]"	chr3:106561865-106561806	hs|3q13.12	Agilent_HUMAN_G3V2	TCONS_00007223	TCONS_00007223	chr3	106561806	106561865	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3914_PI429285431	0.9117535	A	0.9118968	A	0.999900676941887	0	lncRNA	3884-1_{1..581}	"transcript_id ""ENST00000533575.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000533575.1"" | genecode_v17"	chr11	 38668026	 38668606	+	ENSG00000254562.1	ENST00000533575.1	RP11-64I17.1	RP11-64I17.1-001	NA	NA	NA	inter
CUST_41951_PI429285431	1.7785326	A	1.7435024	A	1.02457827035121	0	lncRNA	43722-1_{1..72}	ENST00000362134 ncrna:miRNA chromosome:GRCh37:17:57918627:57918698:1 gene:ENSG00000199004 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362134 ncrna:miRNA chromosome:GRCh37:17:57918627:57918698:1 gene:ENSG00000199004 gene_biotype:miRNA transcript_biotype:miRNA	chr17	 57918627	 57918698	+	ENSG00000199004	ENST00000362134	NA	NA	VMP1	NA	chr17:57908627-57917954	inter
LNCA_21_P0004946	0.98572314	A	1.0026847	A	0.988311984305297	0	lncRNA	TCONS_00011962	NA	NA	NA	NA	XLOC_005476	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005476), lincRNA [TCONS_00011962]"	chr6:137751458-137751798	hs|6q23.3	Agilent_HUMAN_G3V2	TCONS_00011962	TCONS_00011962	chr6	137751458	137751798	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42574_PI429285431	4.5113235	P	4.34549	P	1.12181400562053	0	lncRNA	45411-1_{1..136}	ENST00000516890 ncrna:snoRNA chromosome:GRCh37:17:37007777:37007912:-1 gene:ENSG00000252699 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516890 ncrna:snoRNA chromosome:GRCh37:17:37007777:37007912:-1 gene:ENSG00000252699 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 37007777	 37007912	-	ENSG00000252699	ENST00000516890	NA	NA	RPL23	NA	chr17:37006321-37010053	inner
LNCA_33_P3217764	3.7413507	P	3.116606	A	1.54193793919317	0	lncRNA	ENST00000417557	XR_110582	XR_110582	NA	Hs.531391	NA	NA	ENST00000417557	THC2489146	NA	"PREDICTED: Homo sapiens FLJ35816 protein (FLJ35816), miscRNA [XR_110582]"	chr4:1145860-1145919	hs|4p16.3	Agilent_HUMAN_G3V2	ENST00000417557	ENST00000417557	chr4	  1145860	  1145919	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_832_PI429285431	2.1558368	A	2.4700575	A	0.804285323905745	0	lncRNA	826-1_{1..627}	"transcript_id ""ENST00000585391.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000585391.1"" | genecode_v17"	chr2	 35056445	 35057071	+	ENSG00000226994.2	ENST00000585391.1	AC012593.1	AC012593.1-009	NA	NA	NA	inter
LNCA_33_P3261640	1.1620576	A	2.180917	A	0.493506365999386	0	lncRNA	XR_112366	XR_112366	XR_112366	100134365	NA	LOC100134365	uncharacterized LOC100134365	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100134365 (LOC100134365), miscRNA [XR_112366]"	chr2:98201033-98200977	hs|2q11.2	Agilent_HUMAN_G3V2	XR_112366	XR_112366	chr2	 98200977	 98201033	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009439	0.92152596	A	0.9478681	A	0.98190670515875	0	lncRNA	TCONS_00026232	NA	NA	NA	NA	XLOC_012608	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012608), lincRNA [TCONS_00026232]"	chr18:2170137-2170196	hs|18p11.32	Agilent_HUMAN_G3V2	TCONS_00026232	TCONS_00026232	chr18	  2170137	  2170196	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18932_PI429285431	1.1197629	A	1.1510433	A	0.978551442153188	0	lncRNA	20624-1_{1..1958}	lnc-TFEC-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-TFEC-1:2	chr7	115926672	115928629	-	lnc-TFEC-1	lnc-TFEC-1:2	ENSG00000237870	AC073130.1	NA	NA	NA	inter
CUST_12082_PI429285431	2.8486328	A	3.2787895	P	0.742181168065566	0	lncRNA	13676-1_{1..1519}	lnc-FOXP3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXP3-1:1	chrX	 49122910	 49124428	-	lnc-FOXP3-1	lnc-FOXP3-1:1	XLOC_008164	linc-FOXP3	FOXP3	NA	chrX:49112910-49121288	inter
LNCA_21_P0006877	0.90120435	A	0.9014429	A	0.999834663409678	0	lncRNA	TCONS_00018219	NA	NA	NA	NA	XLOC_008498	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008498), lincRNA [TCONS_00018219]"	chr10:66451234-66452275	hs|10q21.3	Agilent_HUMAN_G3V2	TCONS_00018219	TCONS_00018219	chr10	 66451234	 66452275	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33460_PI429285431	1.3196415	A	0.89569616	A	1.34159139447616	0	lncRNA	35034-1_{1..3000}	n340195|AK125988|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2656|NULL|-1.2698700|-0.3063604	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n340195|AK125988|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2656|NULL|-1.2698700|-0.3063604	chr4	106924473	106927472	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007774	0.89848995	A	0.88703346	A	1.0079726473773	0	lncRNA	TCONS_00020953	NA	NA	NA	NA	XLOC_010219	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010219), lincRNA [TCONS_00020953]"	chr12:120718180-120718121	hs|12q24.31	Agilent_HUMAN_G3V2	TCONS_00020953	TCONS_00020953	chr12	120718121	120718180	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002991	0.90074694	A	0.88490707	A	1.01103985561129	0	lncRNA	TCONS_00006118	NA	NA	NA	NA	XLOC_002722	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002722), lincRNA [TCONS_00006118]"	chr3:84103217-84103276	hs|3p12.1	Agilent_HUMAN_G3V2	TCONS_00006118	TCONS_00006118	chr3	 84103217	 84103276	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014783	0.90359044	A	0.88530195	A	1.01275730416116	0	lncRNA	XR_132565	XR_132565	XR_132565	NA	Hs.494424	FP2234	uncharacterized LOC100507137	NA	THC2492083	NA	"PREDICTED: Homo sapiens hypothetical LOC100507137 (FP2234), miscRNA [XR_132565]"	chr9:93969505-93969446	hs|9q22.31	Agilent_HUMAN_G3V2	XR_132565	XR_132565	chr9	 93969446	 93969505	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005894	0.90462905	A	0.88573796	A	1.01318041161464	0	lncRNA	TCONS_00015149	NA	NA	NA	NA	XLOC_007192	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007192), lincRNA [TCONS_00015149]"	chr8:119728826-119728767	hs|8q24.12	Agilent_HUMAN_G3V2	TCONS_00015149	TCONS_00015149	chr8	119728767	119728826	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21188_PI429285431	1.0600837	A	1.5336645	A	0.720174888129733	0	lncRNA	22813-1_{1..2738}	lnc-TCL1B-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-TCL1B-2:3	chr14	 96221582	 96224319	+	lnc-TCL1B-2	lnc-TCL1B-2:3	ENSG00000257275.2	RP11-164H13.1	NA	"hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-24.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0,hg19_refFlat_RPL15:range=chr3:23959351-239631665'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-37.50;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.30;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-59.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10"	NA	inter
LNCA_21_P0002370	0.90782017	A	0.8915134	A	1.01136711181516	0	lncRNA	TCONS_00004051	NA	NA	NA	NA	XLOC_001894	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001894), lincRNA [TCONS_00004051]"	chr2:230990233-230993725	hs|2q36.3	Agilent_HUMAN_G3V2	TCONS_00004051	TCONS_00004051	chr2	230990233	230993725	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004189	0.9065021	A	0.89197016	A	1.0101236743811	0	lncRNA	ENST00000506431	XR_112794	XR_112794	NA	Hs.634846	XLOC_005077	NA	ENST00000506431	THC2728684	NA	"PREDICTED: Homo sapiens hypothetical LOC100507267 (LOC100507267), miscRNA [XR_112794]"	chr5:169618760-169618701	hs|5q35.1	Agilent_HUMAN_G3V2	ENST00000506431	ENST00000506431	chr5	169618701	169618760	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26717_PI429285431	2.3553138	A	2.7068348	A	0.783757364915636	0	lncRNA	28213-1_{1..575}	n2380|AJ297964|TTY2RNA|Homosapiens|TTY2|NONCODEv2.0|n2380|NULL|-1.5906100|-0.2085425	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n2380|AJ297964|TTY2RNA|Homosapiens|TTY2|NONCODEv2.0|n2380|NULL|-1.5906100|-0.2085425	chrY	 24282677	 24283251	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010890	3.9201736	P	4.5311017	P	0.654775342952244	0	lncRNA	TCONS_l2_00003643	NA	NA	NA	NA	XLOC_l2_002033	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002033), lincRNA [TCONS_l2_00003643]"	chr10:81526056-81505786	hs|10q22.3	Agilent_HUMAN_G3V2	TCONS_l2_00003643	TCONS_l2_00003643	chr10	 81505786	 81526056	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7285_PI429285431	1.3064048	A	0.9293157	A	1.29871880836541	0	lncRNA	8184-1_{1..293}	"transcript_id ""ENST00000485204.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000485204.2"" | genecode_v17"	chr11	 29742946	 29743238	-	ENSG00000243505.2	ENST00000485204.2	RN7SL240P	RN7SL240P-201	NA	"hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.40;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20"	NA	inter
CUST_38679_PI429285431	0.93079084	A	0.97979766	A	0.96660152767379	0	lncRNA	39678-1_{1..2900}	n384012|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ywn.1||-1.2415600|-0.3613886	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384012|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002ywn.1||-1.2415600|-0.3613886	chr21	 38979765	 38982664	-	NA	NA	NA	NA	NA	"hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0,hg19_refFlat_VPS13B:range=chr8:100026017-1002218965'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.80;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-64.70;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50"	NA	inter
LNCA_19_P00319814	4.869676	P	5.1951513	P	0.798035427992757	0	lncRNA	XR_110015	XR_110015	XR_110015	NA	NA	LOC100506924	NA	ENST00000497310	THC2508366	NA	"PREDICTED: Homo sapiens hypothetical LOC100506924 (LOC100506924), miscRNA [XR_110015]"	chr3:58594683-58594624	hs|3p14.3	Agilent_HUMAN_G3V2	XR_110015	XR_110015	chr3	 58594624	 58594683	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014941	1.778846	A	1.2894782	A	1.40382957207812	0	lncRNA	ENST00000545867	XR_133440	XR_133440	NA	Hs.722069	SDIM1	NA	ENST00000545867	THC2487626	NA	"PREDICTED: Homo sapiens stress responsive DNAJB4 interacting membrane protein 1 (SDIM1), miscRNA [XR_133440]"	chr6:166307389-166307330	hs|6q27	Agilent_HUMAN_G3V2	ENST00000545867	ENST00000545867	chr6	166307330	166307389	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006526	0.93102044	A	0.9955411	A	0.956262986225692	0	lncRNA	TCONS_00017291	NA	NA	NA	NA	XLOC_008111	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008111), lincRNA [TCONS_00017291]"	chrX:11125061-11074143	hs|Xp22.2	Agilent_HUMAN_G3V2	TCONS_00017291	TCONS_00017291	chrX	 11074143	 11125061	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43412_PI429285431	10.161321	P	10.322808	P	0.89410303502204	0	lncRNA	48224-1_{1..1696}	"gi|296841041|ref|NR_033686.1| Homo sapiens penta-EF-hand domain containing 1 (PEF1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|296841041|ref|NR_033686.1| Homo sapiens penta-EF-hand domain containing 1 (PEF1), transcript variant 2, non-coding RNA"	Chr1	 32095463	 32097158	-	553115	NR_033686.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0013874	5.300612	P	5.075915	P	1.16853180353644	0	lncRNA	ENST00000444722	NA	NA	NA	NA	XLOC_l2_015855	NA	ENST00000444722	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015855), lincRNA [TCONS_l2_00030882]"	chrX:154564243-154564184	hs|Xq28	Agilent_HUMAN_G3V2	ENST00000444722	ENST00000444722	chrX	154564184	154564243	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28062_PI429285431	7.0028305	P	7.058752	P	0.96197979653707	0	lncRNA	29680-1_{1..400}	n325328|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326020|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326020|-1.1856100|-0.4684853	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n325328|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000326020|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000326020|-1.1856100|-0.4684853	chr2	 43081965	 43082364	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007308	2.6342683	A	1.8071982	A	1.77407881002062	0	lncRNA	TCONS_00019548	NA	NA	NA	NA	XLOC_009344	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009344), lincRNA [TCONS_00019548]"	chr11:134367590-134367649	hs|11q25	Agilent_HUMAN_G3V2	TCONS_00019548	TCONS_00019548	chr11	134367590	134367649	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8822_PI429285431	0.9184195	A	0.9616827	A	0.970457406923259	0	lncRNA	10361-1_{1..555}	lnc-NRG2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NRG2-1:1	chr5	139488058	139488612	-	lnc-NRG2-1	lnc-NRG2-1:1	ENSG00000245146	CTB-131B5.4	PURA	NA	chr5:139493708-139498215	inter
LNCA_21_P0004809	3.696813	P	3.8271012	P	0.913648916906304	0	lncRNA	ENST00000433388	NA	NA	NA	NA	XLOC_005938	NA	ENST00000433388	NA	NA	"BROAD Institute lincRNA (XLOC_005938), lincRNA [TCONS_00011626]"	chr6:169770152-169770093	hs|6q27	Agilent_HUMAN_G3V2	ENST00000433388	ENST00000433388	chr6	169770093	169770152	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32792_PI429285431	1.5380731	A	1.5141838	A	1.01669665774818	0	lncRNA	34427-1_{1..239}	n339437|X75685|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1869|NULL|-1.2520800|-0.3764858	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339437|X75685|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1869|NULL|-1.2520800|-0.3764858	chr21	 17716406	 17716644	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006576	0.9065157	A	0.88695705	A	1.01364933623279	0	lncRNA	TCONS_00017488	NA	NA	NA	NA	XLOC_008116	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008116), lincRNA [TCONS_00017488]"	chrX:13437724-13433601	hs|Xp22.2	Agilent_HUMAN_G3V2	TCONS_00017488	TCONS_00017488	chrX	 13433601	 13437724	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27592_PI429285431	6.4047904	P	6.323425	P	1.05801890045965	0	lncRNA	29171-1_{1..423}	n324795|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000207542|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000207542|-1.0336800|-0.3063723	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324795|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000207542|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000207542|-1.0336800|-0.3063723	chr21	 38620143	 38620565	-	NA	NA	NA	NA	DSCR3	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90chr21:38610143-38637213"	NA	inner
LNCA_19_P00802814	0.9083404	A	0.8889199	A	1.01355227556005	0	lncRNA	XR_109632	XR_109632	XR_109632	NA	NA	LOC729296	uncharacterized LOC729296	NA	THC2495566	NA	"PREDICTED: Homo sapiens hypothetical LOC729296 (LOC729296), miscRNA [XR_109632]"	chr20:58676336-58676395	hs|20q13.33	Agilent_HUMAN_G3V2	XR_109632	XR_109632	chr20	 58676336	 58676395	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007397	5.5306005	P	6.0999556	P	0.673917969599465	0	lncRNA	TCONS_00019754	NA	NA	NA	NA	XLOC_009548	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009548), lincRNA [TCONS_00019754]"	chr11:110794427-110794368	hs|11q23.1	Agilent_HUMAN_G3V2	TCONS_00019754	TCONS_00019754	chr11	110794368	110794427	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011016	7.4340534	P	6.255993	P	2.26272365510034	0	lncRNA	TCONS_l2_00005178	NA	NA	NA	NA	XLOC_l2_002761	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002761), lincRNA [TCONS_l2_00005178]"	chr11:104777733-104776255	hs|11q22.3	Agilent_HUMAN_G3V2	TCONS_l2_00005178	TCONS_l2_00005178	chr11	104776255	104777733	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007704	2.5368593	A	2.8190331	A	0.822350994959378	0	lncRNA	TCONS_00020765	NA	NA	NA	NA	XLOC_010059	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010059), lincRNA [TCONS_00020765]"	chr12:45870595-45870536	hs|12q12	Agilent_HUMAN_G3V2	TCONS_00020765	TCONS_00020765	chr12	 45870536	 45870595	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006541	5.4890327	P	5.8915734	P	0.756524809437051	0	lncRNA	TCONS_00017353	NA	NA	NA	NA	XLOC_008198	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008198), lincRNA [TCONS_00017353]"	chrX:100759627-100759568	hs|Xq22.1	Agilent_HUMAN_G3V2	TCONS_00017353	TCONS_00017353	chrX	100759568	100759627	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50190_PI429285431	6.4263067	P	6.6728907	P	0.842889841099587	0	lncRNA	53915-1_{1..721}	hg19_lincRNAsTranscripts_TCONS_l2_00029272 range=chr9:38694281-38703988 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00029272 range=chr9:38694281-38703988 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr9	 38694281	 38695001	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010053	2.3377638	A	2.0876796	A	1.18927652271418	0	lncRNA	TCONS_00028429	NA	NA	NA	NA	XLOC_013779	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013779), lincRNA [TCONS_00028429]"	chr20:47130224-47130165	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028429	TCONS_00028429	chr20	 47130165	 47130224	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010348	12.142675	P	11.755672	P	1.30767406776571	0	lncRNA	TCONS_00029387	NA	NA	NA	NA	XLOC_014192	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014192), lincRNA [TCONS_00029387]"	chr22:27130348-27130407	hs|22q12.1	Agilent_HUMAN_G3V2	TCONS_00029387	TCONS_00029387	chr22	 27130348	 27130407	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005800	0.95767075	A	1.0084062	A	0.96544404412995	0	lncRNA	TCONS_00014933	NA	NA	NA	NA	XLOC_007004	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007004), lincRNA [TCONS_00014933]"	chr8:10436542-10436483	hs|8p23.1	Agilent_HUMAN_G3V2	TCONS_00014933	TCONS_00014933	chr8	 10436483	 10436542	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014069	3.109563	P	2.8731227	A	1.17808227685088	0	lncRNA	XR_108335	XR_108335	XR_108335	NA	NA	LOC100506838	uncharacterized LOC100506838	NA	THC2657155	NA	"PREDICTED: Homo sapiens hypothetical LOC100506838 (LOC100506838), miscRNA [XR_108335]"	chr1:204249908-204249967	hs|1q32.1	Agilent_HUMAN_G3V2	XR_108335	XR_108335	chr1	204249908	204249967	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_399_PI429201921	0.9155895	A	0.9097394	A	1.00406321287755	0	lncRNA	249-1_{1..3000}	TC13001330.hg.1	TCONS_l2_00007047-XLOC_l2_003883 // Broad TUCP // linc-RASA3-5 chr13:-:19400928-19410602 // chr13 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr13:-:19400928-19410602	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00007047-XLOC_l2_003883	linc-RASA3-5	chr13	 19400928	 19410602	-	NA	NA	NA	NA	INADL	NA	chr1:62208149-62218096	Unknown
CUST_1345_PI429285431	0.91998994	A	0.9311857	A	0.992269723983505	0	lncRNA	1334-1_{1..509}	"transcript_id ""ENST00000457115.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000457115.1"" | genecode_v17"	chr3	 43128971	 43129479	+	ENSG00000227245.1	ENST00000457115.1	RP11-136C24.2	RP11-136C24.2-001	C3orf39	NA	chr3:43120729-43139560	inner
LNCA_21_P0005684	2.0163836	A	1.9944957	A	1.0152872081619	0	lncRNA	TCONS_00014669	NA	NA	NA	NA	XLOC_006768	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006768), lincRNA [TCONS_00014669]"	chr8:33654053-33654112	hs|8p12	Agilent_HUMAN_G3V2	TCONS_00014669	TCONS_00014669	chr8	 33654053	 33654112	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013654	1.8743476	A	1.5422676	A	1.25882697575904	0	lncRNA	CR933606	NA	CR933606	NA	Hs.529357	LOC642236	FSHD region gene 1 pseudogene	NA	THC2550016	NA	"BROAD Institute lincRNA (XLOC_l2_015213), lincRNA [TCONS_l2_00029355]"	chrUn_gl000219:000080058-000079999	NA	Agilent_HUMAN_G3V2	CR933606	CR933606	chrUn_gl000219	    79999	    80058	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006709	1.5254045	A	0.9066695	A	1.53552819183153	0	lncRNA	ENST00000436975	NA	NA	NA	NA	XLOC_008636	NA	ENST00000436975	THC2685121	NA	"BROAD Institute lincRNA (XLOC_008636), lincRNA [TCONS_00017875]"	chr10:120001387-120004907	hs|10q26.11	Agilent_HUMAN_G3V2	ENST00000436975	ENST00000436975	chr10	120001387	120004907	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_582_PI429285431	0.91973954	A	0.9277327	A	0.994474883593475	0	lncRNA	574-1_{1..1148}	"transcript_id ""ENST00000441160.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441160.1"" | genecode_v17"	chr1	222139752	222140899	+	ENSG00000228437.1	ENST00000441160.1	RP11-400N13.2	RP11-400N13.2-001	NA	NA	NA	inter
LNCA_21_P0009736	3.3238635	P	3.9927633	P	0.628986169596007	0	lncRNA	TCONS_00027165	NA	NA	NA	NA	XLOC_013206	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013206), lincRNA [TCONS_00027165]"	chr19:5487645-5482281	hs|19p13.3	Agilent_HUMAN_G3V2	TCONS_00027165	TCONS_00027165	chr19	  5482281	  5487645	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40928_PI429285431	2.5895262	A	2.5160246	A	1.05226757076252	0	lncRNA	41612-1_{1..675}	n410839|NR_038293|lncRNA|Homosapiens||RefGeneNoncode|NR_038293||-0.9701830|-0.1673186	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410839|NR_038293|lncRNA|Homosapiens||RefGeneNoncode|NR_038293||-0.9701830|-0.1673186	chr6	 27661813	 27662487	+	NA	NA	NA	NA	NA	"hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0,hg19_refFlat_NARF:range=chr17:80416680-804460335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30"	NA	inter
CUST_12018_PI429285431	0.90696293	A	1.3867836	A	0.717066751359923	0	lncRNA	13600-1_{1..826}	lnc-ADAMTS16-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ADAMTS16-4:1	chr5	  4644174	  4644999	+	lnc-ADAMTS16-4	lnc-ADAMTS16-4:1	XLOC_004266	linc-ADAMTS16-4	NA	NA	NA	inter
CUST_15356_PI429285431	9.440037	P	9.443124	P	0.997862542276751	0	lncRNA	17038-1_{1..203}	lnc-SSTR4-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SSTR4-2:4	chr20	 23167037	 23167239	+	lnc-SSTR4-2	lnc-SSTR4-2:4	XLOC_013489	linc-NXT1	NA	NA	NA	inter
CUST_16219_PI429285431	3.651919	P	2.8191874	A	1.78105442177211	0	lncRNA	17925-1_{1..867}	lnc-FZD10-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FZD10-3:2	chr12	130445450	130446316	+	lnc-FZD10-3	lnc-FZD10-3:2	XLOC_009952	linc-FZD10-2	NA	"hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10"	NA	inter
CUST_13041_PI429285431	0.91300225	A	0.9085572	A	1.0030858252616	0	lncRNA	14666-1_{1..734}	lnc-RTL1-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RTL1-5:1	chr14	101800976	101801709	-	lnc-RTL1-5	lnc-RTL1-5:1	XLOC_011133	linc-RTL1-8	NA	NA	NA	inter
CUST_25453_PI429285431	1.6882156	A	2.2481906	A	0.678313917906487	0	lncRNA	26983-1_{1..495}	lnc-IFIT2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IFIT2-1:2	chr10	 91051744	 91052238	+	lnc-IFIT2-1	lnc-IFIT2-1:2	ENSG00000232110.2	RP11-149I23.3	IFIT2	NA	chr10:91061706-91061882	inter
LNCA_21_P0002550	4.5819345	P	4.828487	P	0.842908245072086	0	lncRNA	TCONS_00004619	NA	NA	NA	NA	XLOC_002528	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002528), lincRNA [TCONS_00004619]"	chr2:238090735-238090676	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_00004619	TCONS_00004619	chr2	238090676	238090735	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003499	4.265943	P	4.5278087	P	0.834008677800997	0	lncRNA	THC2786806	NA	NA	NA	NA	XLOC_004063	NA	NA	THC2786806	NA	"BROAD Institute lincRNA (XLOC_004063), lincRNA [TCONS_00007820]"	NA	NA	Agilent_HUMAN_G3V2	THC2786806	THC2786806	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013117	4.8371954	P	4.440483	P	1.31650445188253	0	lncRNA	TCONS_l2_00025018	NA	NA	NA	NA	XLOC_l2_013193	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013193), lincRNA [TCONS_l2_00025018]"	chr6:161178501-161176480	hs|6q26	Agilent_HUMAN_G3V2	TCONS_l2_00025018	TCONS_l2_00025018	chr6	161176480	161178501	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009826	1.3375359	A	2.3004448	A	0.513021466749599	0	lncRNA	ENST00000424931	NA	NA	NA	NA	XLOC_013458	NA	ENST00000424931	NA	NA	"BROAD Institute lincRNA (XLOC_013458), lincRNA [TCONS_00027900]"	chr20:10177579-10177638	hs|20p12.2	Agilent_HUMAN_G3V2	ENST00000424931	ENST00000424931	chr20	 10177579	 10177638	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37405_PI429285431	0.978338	A	1.0098512	A	0.978393551268224	0	lncRNA	38511-1_{1..958}	n345859|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1408|NULL|-1.6288700|-0.3023191	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345859|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1408|NULL|-1.6288700|-0.3023191	chr17	 14358447	 14359404	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011026	0.9716449	A	1.0137751	A	0.971219841168429	0	lncRNA	XR_110520	XR_110520	XR_110520	NA	Hs.503862	LOC100506870	uncharacterized LOC100506870	NA	THC2603766	NA	"PREDICTED: Homo sapiens hypothetical LOC100506870, transcript variant 2 (LOC100506870), miscRNA [XR_110520]"	chr11:112162579-112162638	hs|11q23.1	Agilent_HUMAN_G3V2	XR_110520	XR_110520	chr11	112162579	112162638	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43543_PI429285431	2.2535558	A	2.0202901	A	1.17549279806077	0	lncRNA	48323-2_{3001..6000}	"gi|388490241|ref|NR_049774.1| Homo sapiens KIAA1324 (KIAA1324), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|388490241|ref|NR_049774.1| Homo sapiens KIAA1324 (KIAA1324), transcript variant 5, non-coding RNA"	Chr1	109732171	109735170	+	57535	NR_049774.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-91.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.90;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60"	NA	inter
LNCA_21_P0011132	2.080741	A	0.99857175	A	2.11721715685153	0	lncRNA	TCONS_l2_00006750	NA	NA	NA	NA	XLOC_l2_003647	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003647), lincRNA [TCONS_l2_00006750]"	chr13:25147597-25155837	hs|13q12.12	Agilent_HUMAN_G3V2	TCONS_l2_00006750	TCONS_l2_00006750	chr13	 25147597	 25155837	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24376_PI429285431	2.426968	A	2.7312028	A	0.809871655517786	0	lncRNA	25929-1_{1..1605}	lnc-ENOSF1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ENOSF1-3:1	chr18	   738058	   739662	-	lnc-ENOSF1-3	lnc-ENOSF1-3:1	ENSG00000264635.1	RP11-769O8.3	YES1	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-45.40;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0,hg19_refFlat_C11orf80:range=chr11:66512214-666107055'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-89.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0,hg19_refFlat_GAMT:range=chr19:1398675-14014755'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-65.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.70;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-29.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40chr18:728058-749662"	NA	inner
LNCA_21_P0014740	4.226455	P	3.5527248	P	1.5951921330715	0	lncRNA	XR_113296	XR_113296	XR_113296	NA	NA	LOC100506992	uncharacterized LOC100506992	NA	THC2538606	NA	"PREDICTED: Homo sapiens hypothetical LOC100506992 (LOC100506992), miscRNA [XR_113296]"	chrX:119054750-119054691	hs|Xq24	Agilent_HUMAN_G3V2	XR_113296	XR_113296	chrX	119054691	119054750	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00315841	4.869616	P	4.648843	P	1.16535782116947	0	lncRNA	ENST00000431411	NA	NA	NA	NA	XLOC_002249	NA	ENST00000431411	NA	NA	"BROAD Institute lincRNA (XLOC_002249), lincRNA [TCONS_00003359]"	chr2:107151750-107151691	hs|2q12.2	Agilent_HUMAN_G3V2	ENST00000431411	ENST00000431411	chr2	107151691	107151750	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007384	0.913639	A	0.92220956	A	0.99407695132726	0	lncRNA	TCONS_00019734	NA	NA	NA	NA	XLOC_009526	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009526), lincRNA [TCONS_00019734]"	chr11:94821623-94821564	hs|11q21	Agilent_HUMAN_G3V2	TCONS_00019734	TCONS_00019734	chr11	 94821564	 94821623	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48519_PI429285431	0.9231471	A	0.92913574	A	0.995857594597627	0	lncRNA	52372-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00014406 range=chr2:7199703-7217995 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"lncipedia2.1,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014406 range=chr2:7199703-7217995 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	  7199703	  7202702	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0010066	0.9008169	A	0.8997073	A	1.00076941195719	0	lncRNA	TCONS_00028455	NA	NA	NA	NA	XLOC_013818	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013818), lincRNA [TCONS_00028455]"	chr20:56739245-56739186	hs|20q13.32	Agilent_HUMAN_G3V2	TCONS_00028455	TCONS_00028455	chr20	 56739186	 56739245	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9017_PI429285431	5.965939	P	5.359296	P	1.52271189262561	0	lncRNA	10544-1_{1..3000}	lnc-COQ5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-COQ5-1:2	chr12	120933626	120936625	-	lnc-COQ5-1	lnc-COQ5-1:2	ENSG00000248008	ENST00000500741	DYNLL1	"hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.70;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60chr12:120923626-120936298"	NA	inter
CUST_31928_PI429285431	0.9178026	A	0.9247513	A	0.995195108786803	0	lncRNA	33656-1_{1..1366}	n338483|AY007107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|880|NULL|-0.4211970|-0.3611006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338483|AY007107|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|880|NULL|-0.4211970|-0.3611006	chr1	204372517	204373882	+	NA	NA	NA	NA	PPP1R15B	"hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-66.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-70.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-94.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.50;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80chr1:204372492-204380944"	NA	inner
CUST_21431_PI429285431	5.2599177	P	3.9423292	P	2.49249135368043	0	lncRNA	23050-1_{1..2500}	lnc-CHADL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-CHADL-1:1	chr22	 41613036	 41615535	-	lnc-CHADL-1	lnc-CHADL-1:1	ENSG00000235513.1	RP4-756G23.5	L3MBTL2	"hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_L3MBTL2:range=chr22:41601367-416262555'pad=0,hg19_refFlat_L3MBTL2:range=chr22:41601367-416262555'pad=0 3'pad=0 strand=+ repeatMasking=none,-96.00;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60chr22:41603036-41623631"	NA	inner
CUST_12786_PI429285431	0.91389775	A	0.8983878	A	1.01080867429952	0	lncRNA	14412-1_{1..1090}	lnc-WWOX-2:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-WWOX-2:6	chr16	 79841318	 79842407	+	lnc-WWOX-2	lnc-WWOX-2:6	XLOC_011797	linc-DYNLRB2-3	NA	NA	NA	inter
LNCA_21_P0005700	0.8985987	A	0.88947004	A	1.00634756589028	0	lncRNA	TCONS_00014720	NA	NA	NA	NA	XLOC_006810	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006810), lincRNA [TCONS_00014720]"	chr8:59131576-59131635	hs|8q12.1	Agilent_HUMAN_G3V2	TCONS_00014720	TCONS_00014720	chr8	 59131576	 59131635	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012470	0.8993385	A	0.88667023	A	1.0088196414914	0	lncRNA	TCONS_l2_00019630	NA	NA	NA	NA	XLOC_l2_010449	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010449), lincRNA [TCONS_l2_00019630]"	chr3:180466073-180466014	hs|3q26.33	Agilent_HUMAN_G3V2	TCONS_l2_00019630	TCONS_l2_00019630	chr3	180466014	180466073	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012119	8.0578785	P	8.930828	P	0.546029385714137	0	lncRNA	TCONS_l2_00016248	NA	NA	NA	NA	XLOC_l2_008622	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008622), lincRNA [TCONS_l2_00016248]"	chr20:37256456-37256515	hs|20q11.23	Agilent_HUMAN_G3V2	TCONS_l2_00016248	TCONS_l2_00016248	chr20	 37256456	 37256515	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26258_PI429285431	0.9148646	A	0.8932334	A	1.01510657328497	0	lncRNA	27765-1_{1..667}	lnc-LPIN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LPIN2-1:1	chr18	  2832614	  2833280	-	lnc-LPIN2-1	lnc-LPIN2-1:1	ENSG00000266049.1	RP11-703M24.5	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.80"	NA	inter
LNCA_21_P0012389	7.5904994	P	7.5662937	P	1.01691965574179	0	lncRNA	TCONS_l2_00018819	NA	NA	NA	NA	XLOC_l2_009867	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009867), lincRNA [TCONS_l2_00018819]"	chr3:126041578-126041637	hs|3q21.3	Agilent_HUMAN_G3V2	TCONS_l2_00018819	TCONS_l2_00018819	chr3	126041578	126041637	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48556_PI429285431	0.92613864	A	0.9024637	A	1.01654560510077	0	lncRNA	52404-1_{1..423}	hg19_lincRNAsTranscripts_TCONS_l2_00014016 range=chr2:145425483-145621558 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014016 range=chr2:145425483-145621558 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	145425483	145425905	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_64_PI429201921	2.1047075	A	1.7384003	A	1.28904908469047	0	lncRNA	66-1_{1..1896}	TC10002599.hg.1	TCONS_l2_00004165-XLOC_l2_001951 // Broad TUCP // linc-ANUBL1-2 chr10:-:46310875-46312772 // chr10 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr10:-:46310875-46312772	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00004165-XLOC_l2_001951	linc-ANUBL1-2	chr10	 46310875	 46312772	-	NA	NA	NA	NA	EZH1	NA	chr17:40895951-40897071	Unknown
CUST_26031_PI429285431	0.91474634	A	0.9087516	A	1.00416388209681	0	lncRNA	27549-2_{3001..4128}	lnc-LMO7-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LMO7-2:1	chr13	 76381425	 76382552	+	lnc-LMO7-2	lnc-LMO7-2:1	ENSG00000261553.1	RP11-29G8.3	LMO7	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-67.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70chr13:76368425-76391256"	NA	inner
LNCA_21_P0006305	0.90935993	A	0.8907137	A	1.01300846515571	0	lncRNA	TCONS_00016450	NA	NA	NA	NA	XLOC_007812	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007812), lincRNA [TCONS_00016450]"	chr9:106725463-106725404	hs|9q31.1	Agilent_HUMAN_G3V2	TCONS_00016450	TCONS_00016450	chr9	106725404	106725463	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4401_PI429285431	0.90941596	A	0.9040587	A	1.0037202727636	0	lncRNA	4351-1_{1..632}	"transcript_id ""ENST00000546699.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000546699.1"" | genecode_v17"	chr12	106444739	106445370	-	ENSG00000257890.1	ENST00000546699.1	RP11-114F10.2	RP11-114F10.2-001	NUAK1	NA	chr12:106434739-106462032	inter
LNCA_21_P0006963	0.90795493	A	0.8923105	A	1.01090290064837	0	lncRNA	TCONS_00018425	NA	NA	NA	NA	XLOC_008720	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008720), lincRNA [TCONS_00018425]"	chr10:6816178-6816119	hs|10p14	Agilent_HUMAN_G3V2	TCONS_00018425	TCONS_00018425	chr10	  6816119	  6816178	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_476_PI429285431	0.91425586	A	0.9122967	A	1.00135890871109	0	lncRNA	467-1_{1..677}	"transcript_id ""ENST00000454271.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000454271.1"" | genecode_v17"	chr1	169732070	169732746	-	ENSG00000230704.1	ENST00000454271.1	RP1-117P20.3	RP1-117P20.3-001	NA	NA	NA	inter
LNCA_21_P0007291	0.9050253	A	0.8925772	A	1.00866569705632	0	lncRNA	TCONS_00019512	NA	NA	NA	NA	XLOC_009312	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009312), lincRNA [TCONS_00019512]"	chr11:123545156-123545215	hs|11q24.1	Agilent_HUMAN_G3V2	TCONS_00019512	TCONS_00019512	chr11	123545156	123545215	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12719_PI429285431	0.92291284	A	1.6066096	A	0.622567961468916	0	lncRNA	14338-1_{1..1183}	lnc-GLRX5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLRX5-1:2	chr14	 96047756	 96048938	+	lnc-GLRX5-1	lnc-GLRX5-1:2	XLOC_010917	linc-TCL1B-2	NA	NA	NA	inter
LNCA_21_P0009986	0.9002056	A	0.89190483	A	1.00577023938784	0	lncRNA	XR_109633	XR_109633	XR_109633	NA	NA	LOC100506470	uncharacterized LOC100506470	ENST00000441660	THC2678243	NA	"PREDICTED: Homo sapiens hypothetical LOC100506470 (LOC100506470), miscRNA [XR_109633]"	chr20:59655150-59655209	hs|20q13.33	Agilent_HUMAN_G3V2	XR_109633	XR_109633	chr20	 59655150	 59655209	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014195	2.4605918	A	2.3198574	A	1.10246618048112	0	lncRNA	XR_108794	XR_108794	XR_108794	NA	NA	LOC100506312	uncharacterized LOC100506312	NA	THC2532322	NA	"PREDICTED: Homo sapiens hypothetical LOC100506312 (LOC100506312), miscRNA [XR_108794]"	chr7:106815430-106815489	hs|7q22.3	Agilent_HUMAN_G3V2	XR_108794	XR_108794	chr7	106815430	106815489	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001187	1.3108382	A	1.6826234	A	0.772825605552428	0	lncRNA	ENST00000414590	NA	NA	NA	NA	XLOC_001079	NA	ENST00000414590	THC2654599	NA	"BROAD Institute lincRNA (XLOC_001079), lincRNA [TCONS_00000666]"	chr1:166865212-166865153	hs|1q24.1	Agilent_HUMAN_G3V2	ENST00000414590	ENST00000414590	chr1	166865153	166865212	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014785	8.746956	P	8.111469	P	1.55346205231355	0	lncRNA	XR_132567	XR_132567	XR_132567	NA	Hs.730717	LOC100652935	uncharacterized LOC100652935	NA	THC2537871	NA	"PREDICTED: Homo sapiens hypothetical LOC100652935 (LOC100652935), miscRNA [XR_132567]"	chr10:17271753-17271694	hs|10p13	Agilent_HUMAN_G3V2	XR_132567	XR_132567	chr10	 17271694	 17271753	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_24_P795371	4.4478693	P	4.417301	P	1.02141439747816	0	lncRNA	XR_111553	XR_111553	XR_111553	   644192	Hs.58690	LOC644192	uncharacterized LOC644192	NA	THC2763483	NA	"PREDICTED: Homo sapiens hypothetical LOC644192 (LOC644192), miscRNA [XR_111553]"	chr15:96812011-96812001	hs|15q26.2	Agilent_HUMAN_G3V2	XR_111553	XR_111553	chr15	 96812001	 96812011	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28862_PI429285431	4.8413715	P	5.067481	P	0.854937286017425	0	lncRNA	30571-1_{1..835}	n326278|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000087438|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000087438|-1.2615000|-0.2989122	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326278|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000087438|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000087438|-1.2615000|-0.2989122	chr1	197219072	197219906	+	NA	NA	NA	NA	NA	NA	NA	inner
LNCA_19_P00318422	6.2396984	P	6.1381054	P	1.07295755066999	0	lncRNA	TCONS_00016491	NA	NA	NA	NA	XLOC_007868	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007868), lincRNA [TCONS_00016491]"	chr9:132265398-132265339	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_00016491	TCONS_00016491	chr9	132265339	132265398	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24106_PI429285431	13.807862	P	14.819314	P	0.496046750295081	0	lncRNA	25657-1_{1..334}	lnc-WDR34-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR34-1:1	chr9	131425791	131426124	-	lnc-WDR34-1	lnc-WDR34-1:1	ENSG00000234705.1	HMGA1P4	WDR34	NA	chr9:131415791-131419129	inter
LNCA_21_P0013460	5.575261	P	5.714468	P	0.908018124602395	0	lncRNA	ENST00000447933	XR_108713	XR_108713	NA	NA	XLOC_l2_014077	NA	ENST00000447933	THC2644639	NA	"PREDICTED: Homo sapiens hypothetical LOC100506380, transcript variant 2 (LOC100506380), miscRNA [XR_108713]"	chr7:156265007-156264948	hs|7q36.3	Agilent_HUMAN_G3V2	ENST00000447933	ENST00000447933	chr7	156264948	156265007	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7679_PI429285431	0.91074723	A	0.9134681	A	0.998115813942254	0	lncRNA	9312-1_{1..1042}	lnc-HPGDS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HPGDS-1:1	chr4	 95128681	 95129722	-	lnc-HPGDS-1	lnc-HPGDS-1:1	ENSG00000246541	RP11-363G15.2	SMARCAD1	NA	chr4:95118681-95138707	inter
CUST_43739_PI429285431	7.8221426	P	8.183546	P	0.778407005908299	0	lncRNA	48481-1_{1..2400}	"gi|213512777|ref|NR_024485.1| Homo sapiens uncharacterized LOC100130093 (LOC100130093), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|213512777|ref|NR_024485.1| Homo sapiens uncharacterized LOC100130093 (LOC100130093), transcript variant 1, non-coding RNA"	Chr1	227916240	227918639	+	100130093	NR_024485.1	NA	NA	NA	"hg19_refFlat_JMJD4:range=chr1:227920093-2279231125'pad=0,hg19_refFlat_JMJD4:range=chr1:227920093-2279231125'pad=0 3'pad=0 strand=- repeatMasking=none,-104.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20"	NA	inter
LNCA_21_P0002021	4.977126	P	5.488514	P	0.70154716277614	0	lncRNA	ENST00000422415	NA	NA	NA	NA	XLOC_001998	NA	ENST00000422415	THC2657970	NA	"BROAD Institute lincRNA (XLOC_001998), lincRNA [TCONS_00003212]"	chr2:16137230-16137171	hs|2p24.3	Agilent_HUMAN_G3V2	ENST00000422415	ENST00000422415	chr2	 16137171	 16137230	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004569	3.3529742	P	3.738444	P	0.765529670454299	0	lncRNA	XR_108596	XR_108596	XR_108596	NA	Hs.628363	LOC100505994	uncharacterized LOC100505994	NA	THC2535044	NA	"PREDICTED: Homo sapiens hypothetical LOC100505994 (LOC100505994), miscRNA [XR_108596]"	chr5:90609980-90609921	hs|5q14.3	Agilent_HUMAN_G3V2	XR_108596	XR_108596	chr5	 90609921	 90609980	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00806702	0.908248	A	0.88824093	A	1.01396444876191	0	lncRNA	TCONS_00017518	NA	NA	NA	NA	XLOC_008186	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008186), lincRNA [TCONS_00017518]"	chrX:73167208-73167149	hs|Xq13.2	Agilent_HUMAN_G3V2	TCONS_00017518	TCONS_00017518	chrX	 73167149	 73167208	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009727	4.628648	P	4.502411	P	1.09144316011614	0	lncRNA	TCONS_00027066	NA	NA	NA	NA	XLOC_013108	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013108), lincRNA [TCONS_00027066]"	chr19:48826387-48826446	hs|19q13.33	Agilent_HUMAN_G3V2	TCONS_00027066	TCONS_00027066	chr19	 48826387	 48826446	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51646_PI429285431	6.163497	P	6.6963415	P	0.691190598804191	0	lncRNA	55216-1_{1..1321}	hg19_lincRNAsTranscripts_TCONS_l2_00011378 range=chr17:58203930-58213063 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011378 range=chr17:58203930-58213063 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 58203930	 58205250	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014352	0.9049837	A	1.495859	A	0.663939964663	0	lncRNA	XR_109399	XR_109399	XR_109399	NA	Hs.720309	LOC100288866	uncharacterized LOC100288866	ENST00000514506	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100288866 (LOC100288866), miscRNA [XR_109399]"	chr17:47583357-47583298	hs|17q21.33	Agilent_HUMAN_G3V2	XR_109399	XR_109399	chr17	 47583298	 47583357	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004525	0.9034586	A	0.8926257	A	1.00753705577943	0	lncRNA	AK055381	NA	AK055381	NA	Hs.556880	XLOC_004517	NA	NA	THC2515869	NA	"BROAD Institute lincRNA (XLOC_004517), lincRNA [TCONS_00010773]"	chr5:115292267-115292326	hs|5q23.1	Agilent_HUMAN_G3V2	AK055381	AK055381	chr5	115292267	115292326	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28760_PI429285431	0.91730505	A	0.9129714	A	1.00300837337908	0	lncRNA	30467-1_{1..740}	n326165|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099241|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099241|-0.9311510|-0.3759754	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326165|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000099241|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000099241|-0.9311510|-0.3759754	chr1	234172475	234173214	-	NA	NA	NA	NA	SLC35F3	NA	chr1:234162475-234183728	inner
CUST_887_PI429285431	10.029342	P	10.927299	P	0.536646137872931	0	lncRNA	876-2_{3001..4077}	"transcript_id ""ENST00000452840.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000452840.1"" | genecode_v17"	chr2	 58658473	 58659549	+	ENSG00000233723.3	ENST00000452840.1	AC007092.1	AC007092.1-001	NA	"hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-73.20;hg19_refFlat_IK:range=chr5:140027494-1400419145'pad=0,hg19_refFlat_IK:range=chr5:140027494-1400419145'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.20;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-12.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.11;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60"	NA	inter
LNCA_21_P0011067	0.98888427	A	1.0034077	A	0.989983626819368	0	lncRNA	TCONS_l2_00005933	NA	NA	NA	NA	XLOC_l2_003178	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003178), lincRNA [TCONS_l2_00005933]"	chr12:120412916-120412975	hs|12q24.23	Agilent_HUMAN_G3V2	TCONS_l2_00005933	TCONS_l2_00005933	chr12	120412916	120412975	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006599	1.4401801	A	1.0097207	A	1.34766264720966	0	lncRNA	TCONS_00017629	NA	NA	NA	NA	XLOC_008277	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008277), lincRNA [TCONS_00017629]"	chrY:2981903-2981962	hs|Yp11.31	Agilent_HUMAN_G3V2	TCONS_00017629	TCONS_00017629	chrY	  2981903	  2981962	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008585	0.92643255	A	0.9777943	A	0.96502501837586	0	lncRNA	TCONS_00023301	NA	NA	NA	NA	XLOC_011170	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011170), lincRNA [TCONS_00023301]"	chr15:24221358-24222560	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023301	TCONS_00023301	chr15	 24221358	 24222560	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49316_PI429285431	5.7583146	P	5.948287	P	0.876622491699695	0	lncRNA	53132-1_{1..1073}	hg19_lincRNAsTranscripts_TCONS_l2_00022858 range=chr5:38821815-38845844 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022858 range=chr5:38821815-38845844 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 38821815	 38822887	-	NA	NA	NA	NA	OSMR	NA	chr5:38811815-38855844	inter
CUST_34492_PI429285431	3.363151	P	2.237069	A	2.182651808298	0	lncRNA	35959-1_{1..1288}	n341369|BC033053|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3838|NULL|-0.9494480|-0.2206105	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n341369|BC033053|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3838|NULL|-0.9494480|-0.2206105	chr7	154720207	154721494	+	NA	NA	NA	NA	PAXIP1	"hg19_refFlat_PAXIP1:range=chr7:154735859-1547946395'pad=0,hg19_refFlat_PAXIP1:range=chr7:154735859-1547946395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00chr7:154735400-154748546"	NA	inner
LNCA_21_P0014199	6.0778093	P	6.0238347	P	1.03812099328792	0	lncRNA	XR_108809	XR_108809	XR_108809	NA	Hs.588334	DKFZP434F142	uncharacterized DKFZp434F142	NA	THC2484192	NA	"PREDICTED: Homo sapiens hypothetical DKFZp434F142 (DKFZP434F142), miscRNA [XR_108809]"	chr7:65305522-65305581	hs|7q11.21	Agilent_HUMAN_G3V2	XR_108809	XR_108809	chr7	 65305522	 65305581	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_142_PI429285431	3.7901337	P	3.7080758	P	1.05852687611652	0	lncRNA	133-1_{1..634}	"transcript_id ""ENST00000413332.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000413332.1"" | genecode_v17"	chr1	  3816936	  3817569	+	ENSG00000236423.1	ENST00000413332.1	RP13-15E13.1	RP13-15E13.1-002	C1orf174	NA	chr1:3806936-3816857	inter
LNCA_21_P0004562	4.702068	P	6.201527	P	0.35368599536853	0	lncRNA	TCONS_00010961	NA	NA	NA	NA	XLOC_004881	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004881), lincRNA [TCONS_00010961]"	chr5:72542396-72542337	hs|5q13.2	Agilent_HUMAN_G3V2	TCONS_00010961	TCONS_00010961	chr5	 72542337	 72542396	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_203_PI429285431	3.9817116	P	4.433566	P	0.731102504971681	0	lncRNA	193-1_{1..446}	"transcript_id ""ENST00000438790.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438790.1"" | genecode_v17"	chr1	 31297522	 31297967	+	ENSG00000223382.3	ENST00000438790.1	RP1-65J11.1	RP1-65J11.1-001	NA	NA	NA	inter
CUST_44681_PI429285431	2.9516249	A	0.89699984	A	4.15435660294399	0	lncRNA	49241-1_{1..2484}	"gi|146261999|ref|NR_002174.2| Homo sapiens cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene (CMAHP), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|146261999|ref|NR_002174.2| Homo sapiens cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene (CMAHP), transcript variant 1, non-coding RNA"	Chr6	 25081295	 25083778	-	8418	NR_002174.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0008838	0.8990672	A	0.8888753	A	1.00708949910118	0	lncRNA	TCONS_00024003	NA	NA	NA	NA	XLOC_011346	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011346), lincRNA [TCONS_00024003]"	chr15:89953873-89953932	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00024003	TCONS_00024003	chr15	 89953873	 89953932	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003255	8.089701	P	8.841835	P	0.593724684304402	0	lncRNA	TCONS_00007009	NA	NA	NA	NA	XLOC_002878	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002878), lincRNA [TCONS_00007009]"	chr3:152455517-152455576	hs|3q25.2	Agilent_HUMAN_G3V2	TCONS_00007009	TCONS_00007009	chr3	152455517	152455576	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003484	0.90128535	A	0.88561565	A	1.01092060760604	0	lncRNA	ENST00000503666	NA	NA	NA	NA	XLOC_004009	NA	ENST00000503666	THC2728709	NA	"BROAD Institute lincRNA (XLOC_004009), lincRNA [TCONS_00007791]"	chr4:88183142-88183083	hs|4q22.1	Agilent_HUMAN_G3V2	ENST00000503666	ENST00000503666	chr4	 88183083	 88183142	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014078	4.002993	P	3.1768253	P	1.77296947777097	0	lncRNA	ENST00000453136	XR_108358	XR_108358	NA	Hs.658188	LOC100129268	NA	ENST00000453136	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100129268, transcript variant 2 (LOC100129268), miscRNA [XR_108358]"	chr1:155175206-155175265	hs|1q22	Agilent_HUMAN_G3V2	ENST00000453136	ENST00000453136	chr1	155175206	155175265	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007226	2.6018157	A	1.6824977	A	1.89122105202579	0	lncRNA	TCONS_00019360	NA	NA	NA	NA	XLOC_009185	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009185), lincRNA [TCONS_00019360]"	chr11:68050081-68050140	hs|11q13.2	Agilent_HUMAN_G3V2	TCONS_00019360	TCONS_00019360	chr11	 68050081	 68050140	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008141	0.9098995	A	0.8912692	A	1.01299727974556	0	lncRNA	TCONS_00021966	NA	NA	NA	NA	XLOC_010562	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010562), lincRNA [TCONS_00021966]"	chr13:31945403-31945344	hs|13q12.3	Agilent_HUMAN_G3V2	TCONS_00021966	TCONS_00021966	chr13	 31945344	 31945403	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30072_PI429285431	6.2160864	P	6.187314	P	1.02014370837723	0	lncRNA	31841-1_{1..646}	n334588|U72516|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221185|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221185|-1.4232400|-0.5001796	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334588|U72516|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000221185|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000221185|-1.4232400|-0.5001796	chr12	  7110681	  7111326	-	NA	NA	NA	NA	LPCAT3	NA	chr12:7100681-7125781	inner
LNCA_21_P0005210	0.9097057	A	1.2847266	A	0.771094241953442	0	lncRNA	XR_110640	XR_110640	XR_110640	NA	Hs.520664	LOC100505904	uncharacterized LOC100505904	ENST00000447039	THC2621911	NA	"PREDICTED: Homo sapiens hypothetical LOC100505904 (LOC100505904), miscRNA [XR_110640]"	chr7:7317328-7317387	hs|7p21.3	Agilent_HUMAN_G3V2	XR_110640	XR_110640	chr7	  7317328	  7317387	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005522	0.9093356	A	0.8922235	A	1.01193182689556	0	lncRNA	TCONS_00013929	NA	NA	NA	NA	XLOC_006566	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006566), lincRNA [TCONS_00013929]"	chr7:113704321-113704262	hs|7q31.1	Agilent_HUMAN_G3V2	TCONS_00013929	TCONS_00013929	chr7	113704262	113704321	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008199	3.7733245	P	3.1444678	P	1.54633907252881	0	lncRNA	TCONS_00022085	NA	NA	NA	NA	XLOC_010692	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010692), lincRNA [TCONS_00022085]"	chr13:95141228-95141169	hs|13q32.1	Agilent_HUMAN_G3V2	TCONS_00022085	TCONS_00022085	chr13	 95141169	 95141228	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41704_PI429285431	3.8682594	P	3.4932756	P	1.29682499254174	0	lncRNA	43202-1_{1..118}	ENST00000390225 ncrna:miRNA chromosome:GRCh37:19:46522190:46522307:1 gene:ENSG00000211580 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390225 ncrna:miRNA chromosome:GRCh37:19:46522190:46522307:1 gene:ENSG00000211580 gene_biotype:miRNA transcript_biotype:miRNA	chr19	 46522190	 46522307	+	ENSG00000211580	ENST00000390225	NA	NA	CCDC61	NA	chr19:46512190-46521874	inter
CUST_25855_PI429285431	0.93067396	A	1.54795	A	0.651900623411248	0	lncRNA	27376-1_{1..682}	lnc-C1orf132-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1orf132-3:1	chr1	207726068	207726749	-	lnc-C1orf132-3	lnc-C1orf132-3:1	ENSG00000236911.1	RP11-78B10.2	CR1	"hg19_refFlat_CR1:range=chr1:207669613-2078127545'pad=0,hg19_refFlat_CR1:range=chr1:207669613-2078127545'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CR1L:range=chr1:207818579-2078970305'pad=0,hg19_refFlat_CR1L:range=chr1:207818579-2078970305'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10chr1:207716068-207736324"	NA	inner
LNCA_21_P0014456	4.922048	P	4.7328115	P	1.14016016304141	0	lncRNA	XR_109905	XR_109905	XR_109905	NA	NA	LOC100505634	uncharacterized LOC100505634	NA	THC2685060	NA	"PREDICTED: Homo sapiens hypothetical LOC100505634 (LOC100505634), miscRNA [XR_109905]"	chr2:111964502-111964443	hs|2q13	Agilent_HUMAN_G3V2	XR_109905	XR_109905	chr2	111964443	111964502	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011012	0.9746869	A	1.0151898	A	0.972315954822339	0	lncRNA	TCONS_l2_00005064	NA	NA	NA	NA	XLOC_l2_002686	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002686), lincRNA [TCONS_l2_00005064]"	chr11:65593760-65593701	hs|11q13.1	Agilent_HUMAN_G3V2	TCONS_l2_00005064	TCONS_l2_00005064	chr11	 65593701	 65593760	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008858	4.6926527	P	4.5094433	P	1.13540688884194	0	lncRNA	TCONS_00024176	NA	NA	NA	NA	XLOC_011535	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011535), lincRNA [TCONS_00024176]"	chr15:77657541-77653751	hs|15q24.3	Agilent_HUMAN_G3V2	TCONS_00024176	TCONS_00024176	chr15	 77653751	 77657541	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010705	0.93184555	A	0.9961391	A	0.956413533621786	0	lncRNA	ENST00000451250	NA	NA	NA	NA	XLOC_l2_000220	NA	ENST00000451250	THC2740174	NA	"BROAD Institute lincRNA (XLOC_l2_000220), lincRNA [TCONS_l2_00002055]"	chr1:55699775-55699834	hs|1p32.3	Agilent_HUMAN_G3V2	ENST00000451250	ENST00000451250	chr1	 55699775	 55699834	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005147	6.2771587	P	6.5569243	P	0.823724840017757	0	lncRNA	TCONS_00012633	NA	NA	NA	NA	XLOC_005563	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005563), lincRNA [TCONS_00012633]"	chr6:170483285-170488101	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012633	TCONS_00012633	chr6	170483285	170488101	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004669	1.1919034	A	1.9194648	A	0.60392386936197	0	lncRNA	ENST00000424678	NA	NA	NA	NA	XLOC_005393	NA	ENST00000424678	NA	NA	"BROAD Institute lincRNA (XLOC_005393), lincRNA [TCONS_00011339]"	chr6:94599016-94599075	hs|6q16.1	Agilent_HUMAN_G3V2	ENST00000424678	ENST00000424678	chr6	 94599016	 94599075	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43730_PI429285431	6.2660975	P	5.952057	P	1.24318456766415	0	lncRNA	48474-1_{1..1642}	"gi|336391094|ref|NR_038845.1| Homo sapiens uncharacterized LOC643723 (LOC643723), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|336391094|ref|NR_038845.1| Homo sapiens uncharacterized LOC643723 (LOC643723), non-coding RNA"	Chr1	219254315	219255956	-	643723	NR_038845.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0004345	7.5085664	P	7.4943876	P	1.00987644859198	0	lncRNA	TCONS_00010211	NA	NA	NA	NA	XLOC_004680	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004680), lincRNA [TCONS_00010211]"	chr5:179910430-179910489	hs|5q35.3	Agilent_HUMAN_G3V2	TCONS_00010211	TCONS_00010211	chr5	179910430	179910489	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013077	0.9040457	A	0.90625006	A	0.998473220796125	0	lncRNA	TCONS_l2_00024695	NA	NA	NA	NA	XLOC_l2_012942	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012942), lincRNA [TCONS_l2_00024695]"	chr6:29676534-29676475	hs|6p22.1	Agilent_HUMAN_G3V2	TCONS_l2_00024695	TCONS_l2_00024695	chr6	 29676475	 29676534	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44896_PI429285431	7.62692	P	7.1141443	P	1.42679266086223	0	lncRNA	49417-1_{1..2276}	"gi|325652049|ref|NR_037939.1| Homo sapiens homeobox A10 (HOXA10), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|325652049|ref|NR_037939.1| Homo sapiens homeobox A10 (HOXA10), transcript variant 2, non-coding RNA"	Chr7	 27210210	 27212485	-	3206	NR_037939.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001302	0.8996457	A	0.8874742	A	1.00847232965688	0	lncRNA	TCONS_00000952	NA	NA	NA	NA	XLOC_000210	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000210), lincRNA [TCONS_00000952]"	chr1:56436671-56436730	hs|1p32.2	Agilent_HUMAN_G3V2	TCONS_00000952	TCONS_00000952	chr1	 56436671	 56436730	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008029	0.9024637	A	0.8855757	A	1.01177465139831	0	lncRNA	XR_111368	XR_111368	XR_111368	NA	Hs.255773	LOC100506622	uncharacterized LOC100506622	NA	THC2616687	NA	"PREDICTED: Homo sapiens hypothetical LOC100506622 (LOC100506622), miscRNA [XR_111368]"	chr13:22848878-22848937	hs|13q12.11	Agilent_HUMAN_G3V2	XR_111368	XR_111368	chr13	 22848878	 22848937	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003105	3.615079	P	3.4327493	P	1.13471477238388	0	lncRNA	TCONS_00006452	NA	NA	NA	NA	XLOC_003062	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003062), lincRNA [TCONS_00006452]"	chr3:16580896-16569756	hs|3p24.3	Agilent_HUMAN_G3V2	TCONS_00006452	TCONS_00006452	chr3	 16569756	 16580896	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008105	1.2758794	A	0.8863998	A	1.30992081212395	0	lncRNA	TCONS_00021873	NA	NA	NA	NA	XLOC_010471	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010471), lincRNA [TCONS_00021873]"	chr13:93699344-93710065	hs|13q31.3	Agilent_HUMAN_G3V2	TCONS_00021873	TCONS_00021873	chr13	 93699344	 93710065	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013079	0.9067014	A	0.88694113	A	1.01379100599305	0	lncRNA	TCONS_l2_00024745	NA	NA	NA	NA	XLOC_l2_012984	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012984), lincRNA [TCONS_l2_00024745]"	chr6:40827617-40827558	hs|6p21.1	Agilent_HUMAN_G3V2	TCONS_l2_00024745	TCONS_l2_00024745	chr6	 40827558	 40827617	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006597	4.6220593	P	4.776001	P	0.898791446471509	0	lncRNA	ENST00000417585	NA	NA	NA	NA	XLOC_008311	NA	ENST00000417585	NA	NA	"BROAD Institute lincRNA (XLOC_008311), lincRNA [TCONS_00017621]"	chrY:9697028-9697581	hs|Yp11.2	Agilent_HUMAN_G3V2	ENST00000417585	ENST00000417585	chrY	  9697028	  9697581	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34575_PI429285431	1.5333045	A	2.1595538	A	0.647858522059379	0	lncRNA	36035-1_{1..2171}	n341459|AK130309|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3929|NULL|-1.2147600|-0.3617805	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341459|AK130309|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3929|NULL|-1.2147600|-0.3617805	chr8	 21782307	 21784477	+	NA	NA	NA	NA	XPO7	NA	chr8:21777180-21794476	inner
CUST_21279_PI429285431	0.9226945	A	0.92193	A	1.00053005144719	0	lncRNA	22904-1_{1..430}	lnc-GABPA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GABPA-1:1	chr21	 27307224	 27307653	+	lnc-GABPA-1	lnc-GABPA-1:1	ENSG00000233783.1	AP001442.2	APP	NA	chr21:27297224-27317584	inner
LNCA_21_P0011414	6.4733863	P	6.8355494	P	0.777997217204704	0	lncRNA	TCONS_l2_00009565	NA	NA	NA	NA	XLOC_l2_005100	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005100), lincRNA [TCONS_l2_00009565]"	chr16:2461188-2461247	hs|16p13.3	Agilent_HUMAN_G3V2	TCONS_l2_00009565	TCONS_l2_00009565	chr16	  2461188	  2461247	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002549	3.1052723	P	2.8671784	A	1.17943335497603	0	lncRNA	TCONS_00004611	NA	NA	NA	NA	XLOC_002515	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002515), lincRNA [TCONS_00004611]"	chr2:231555014-231554955	hs|2q37.1	Agilent_HUMAN_G3V2	TCONS_00004611	TCONS_00004611	chr2	231554955	231555014	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30101_PI429285431	8.561154	P	8.787893	P	0.854564327347006	0	lncRNA	31873-1_{1..364}	n334642|AB076349|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000242038|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000242038|1.7109200|-0.0264359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334642|AB076349|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000242038|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000242038|1.7109200|-0.0264359	chr21	 45970318	 45970681	-	NA	NA	NA	NA	TSPEAR	NA	chr21:45960318-45981388	inner
LNCA_21_P0013405	0.9633089	A	1.0111564	A	0.967378580909327	0	lncRNA	ENST00000476892	NA	NA	NA	NA	XLOC_l2_013577	NA	ENST00000476892	THC2623943	NA	"BROAD Institute lincRNA (XLOC_l2_013577), lincRNA [TCONS_l2_00027207]"	chr7:123635407-123635466	hs|7q31.32	Agilent_HUMAN_G3V2	ENST00000476892	ENST00000476892	chr7	123635407	123635466	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006478	1.166656	A	1.9102427	A	0.597252668620103	0	lncRNA	TCONS_00017125	NA	NA	NA	NA	XLOC_007918	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007918), lincRNA [TCONS_00017125]"	chrX:1902062-1902121	hs|Xp22.33	Agilent_HUMAN_G3V2	TCONS_00017125	TCONS_00017125	chrX	  1902062	  1902121	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004661	0.9266315	A	0.9788602	A	0.964445285936718	0	lncRNA	ENST00000421318	NA	NA	NA	NA	XLOC_005348	NA	ENST00000421318	THC2658779	NA	"BROAD Institute lincRNA (XLOC_005348), lincRNA [TCONS_00011326]"	chr6:75361517-75361576	hs|6q13	Agilent_HUMAN_G3V2	ENST00000421318	ENST00000421318	chr6	 75361517	 75361576	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22568_PI429285431	0.92605066	A	0.9190531	A	1.00486212092002	0	lncRNA	24155-1_{1..582}	lnc-CD40LG-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-CD40LG-2:3	chrX	136103571	136104152	+	lnc-CD40LG-2	lnc-CD40LG-2:3	ENSG00000234062.3	RP11-308D16.4	GPR101	NA	chrX:136112307-136113789	inter
CUST_4507_PI429285431	4.1301675	P	4.274073	P	0.905065744927526	0	lncRNA	4456-1_{1..552}	"transcript_id ""ENST00000543651.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000543651.1"" | genecode_v17"	chr12	128508333	128508884	-	ENSG00000256643.1	ENST00000543651.1	RP11-349K16.1	RP11-349K16.1-001	NA	NA	NA	inter
CUST_45130_PI429285431	5.1399117	P	5.575306	P	0.73949161807709	0	lncRNA	49610-1_{1..1266}	"gi|310120149|ref|XR_110088.1| PREDICTED: Homo sapiens uncharacterized LOC389607 (LOC389607), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310120149|ref|XR_110088.1| PREDICTED: Homo sapiens uncharacterized LOC389607 (LOC389607), misc_RNA"	Chr8	   607527	   608792	-	389607	XR_110088.2	NA	NA	NA	NA	NA	inter
CUST_21374_PI429285431	0.9154088	A	0.9156822	A	0.999810511516046	0	lncRNA	22996-1_{1..1854}	lnc-PAPPA-AS1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-PAPPA-AS1-1:2	chr9	119050955	119052808	-	lnc-PAPPA-AS1-1	lnc-PAPPA-AS1-1:2	ENSG00000226604.2	RP11-45A16.3	PAPPA	NA	chr9:119040955-119061048	inner
CUST_12515_PI429285431	1.5670878	A	0.92725027	A	1.55815367699399	0	lncRNA	14126-1_{1..462}	lnc-GDAP2-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GDAP2-1:7	chr1	118147798	118148259	-	lnc-GDAP2-1	lnc-GDAP2-1:7	XLOC_000980	linc-VTCN1-2	FAM46C	NA	chr1:118148604-118157980	inter
CUST_6828_PI429285431	0.9068317	A	0.9002055	A	1.00460349552586	0	lncRNA	6776-1_{1..631}	"transcript_id ""ENST00000439840.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000439840.1"" | genecode_v17"	chr21	 26768799	 26769429	-	ENSG00000185433.4	ENST00000439840.1	LINC00158	LINC00158-003	NA	NA	NA	inter
LNCA_21_P0014152	2.6073174	A	2.224878	A	1.30354410786704	0	lncRNA	XR_108613	XR_108613	XR_108613	NA	Hs.666262	LOC100506880	uncharacterized LOC100506880	ENST00000451856	THC2652376	NA	"PREDICTED: Homo sapiens hypothetical LOC100506880 (LOC100506880), miscRNA [XR_108613]"	chr6:83648309-83648368	hs|6q14.1	Agilent_HUMAN_G3V2	XR_108613	XR_108613	chr6	 83648309	 83648368	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007571	0.8994382	A	1.9403065	A	0.486034860865004	0	lncRNA	ENST00000535058	NA	NA	NA	NA	XLOC_009787	NA	ENST00000535058	NA	NA	"BROAD Institute lincRNA (XLOC_009787), lincRNA [TCONS_00020454]"	chr12:65277507-65277566	hs|12q14.3	Agilent_HUMAN_G3V2	ENST00000535058	ENST00000535058	chr12	 65277507	 65277566	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22086_PI429285431	6.204743	P	6.628551	P	0.74545439504376	0	lncRNA	23691-1_{1..702}	lnc-AGGF1-3:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGGF1-3:12	chr5	 76426916	 76427617	+	lnc-AGGF1-3	lnc-AGGF1-3:12	ENSG00000250802.2	CTC-564N23.3	NA	NA	NA	inter
LNCA_21_P0008383	2.966916	P	3.4565194	P	0.712220861951066	0	lncRNA	TCONS_00022622	NA	NA	NA	NA	XLOC_010922	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010922), lincRNA [TCONS_00022622]"	chr14:97935063-97935122	hs|14q32.2	Agilent_HUMAN_G3V2	TCONS_00022622	TCONS_00022622	chr14	 97935063	 97935122	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47742_PI429285431	2.284524	A	2.4525287	A	0.890072833575841	0	lncRNA	51691-2_{3001..6000}	"gi|385137105|ref|NR_047643.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 73, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137105|ref|NR_047643.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 73, non-coding RNA"	ChrY	 15363259	 15366258	-	7404	NR_047643.1	NA	NA	NA	NA	NA	inter
CUST_43100_PI429285431	14.19097	P	14.369106	P	0.883844208895908	0	lncRNA	47623-1_{1..126}	ENST00000517226 ncrna:snRNA chromosome:GRCh37:11:122322182:122322307:1 gene:ENSG00000253035 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517226 ncrna:snRNA chromosome:GRCh37:11:122322182:122322307:1 gene:ENSG00000253035 gene_biotype:snRNA transcript_biotype:snRNA	chr11	122322182	122322307	+	ENSG00000253035	ENST00000517226	NA	NA	NA	NA	NA	inter
LNCA_21_P0014228	4.2405195	P	4.318416	P	0.947438038060722	0	lncRNA	ENST00000433357	XR_108946	XR_108946	NA	Hs.644630	LOC100289137	NA	ENST00000433357	THC2534645	NA	"PREDICTED: Homo sapiens hypothetical LOC100289137 (LOC100289137), miscRNA [XR_108946]"	chr9:33603280-33603339	hs|9p13.3	Agilent_HUMAN_G3V2	ENST00000433357	ENST00000433357	chr9	 33603280	 33603339	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16242_PI429285431	0.9118668	A	0.89212203	A	1.01378011410271	0	lncRNA	17949-1_{1..3000}	lnc-AC099552.4.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC099552.4.1-2:2	chr7	155058311	155061310	-	lnc-AC099552.4.1-2	lnc-AC099552.4.1-2:2	XLOC_006663	linc-PAXIP1-6	NA	NA	NA	inter
CUST_8132_PI429285431	0.9276128	A	1.1040128	A	0.884908381863872	0	lncRNA	9735-2_{3001..4804}	lnc-CDH6-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CDH6-3:1	chr5	 29076007	 29077810	+	lnc-CDH6-3	lnc-CDH6-3:1	ENSG00000249322	ENST00000509556	NA	NA	NA	inter
LNCA_21_P0003151	1.5499747	A	2.6157424	A	0.477718383300349	0	lncRNA	TCONS_00006586	NA	NA	NA	NA	XLOC_003203	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003203), lincRNA [TCONS_00006586]"	chr3:106639854-106631999	hs|3q13.12	Agilent_HUMAN_G3V2	TCONS_00006586	TCONS_00006586	chr3	106631999	106639854	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3761_PI429285431	0.9068957	A	0.8908252	A	1.01120149390221	0	lncRNA	3729-1_{1..495}	"transcript_id ""ENST00000438082.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000438082.1"" | genecode_v17"	chr10	 89367742	 89368236	+	ENSG00000225913.2	ENST00000438082.1	RP11-57C13.6	RP11-57C13.6-002	PAPSS2	NA	chr10:89402363-89429036	inter
LNCA_21_P0002141	1.5779905	A	1.5142392	A	1.04517991060006	0	lncRNA	ENST00000442062	NA	NA	NA	NA	XLOC_002509	NA	ENST00000442062	NA	NA	"BROAD Institute lincRNA (XLOC_002509), lincRNA [TCONS_00003506]"	chr2:229548312-229548253	hs|2q36.3	Agilent_HUMAN_G3V2	ENST00000442062	ENST00000442062	chr2	229548253	229548312	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007267	0.990417	A	1.0117106	A	0.985348790160003	0	lncRNA	TCONS_00019448	NA	NA	NA	NA	XLOC_009257	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009257), lincRNA [TCONS_00019448]"	chr11:95432575-95432634	hs|11q21	Agilent_HUMAN_G3V2	TCONS_00019448	TCONS_00019448	chr11	 95432575	 95432634	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008334	0.9684863	A	1.0133747	A	0.969364799467392	0	lncRNA	TCONS_00022500	NA	NA	NA	NA	XLOC_010826	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010826), lincRNA [TCONS_00022500]"	chr14:51817064-51818767	hs|14q22.1	Agilent_HUMAN_G3V2	TCONS_00022500	TCONS_00022500	chr14	 51817064	 51818767	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007056	0.95818764	A	1.0091183	A	0.965313419447253	0	lncRNA	TCONS_00018705	NA	NA	NA	NA	XLOC_008435	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008435), lincRNA [TCONS_00018705]"	chr10:30257622-30257681	hs|10p11.23	Agilent_HUMAN_G3V2	TCONS_00018705	TCONS_00018705	chr10	 30257622	 30257681	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29602_PI429285431	1.5711418	A	1.7798374	A	0.865319248496041	0	lncRNA	31363-1_{1..771}	n333121|AF339795|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077947|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077947|-1.3071000|-0.4394283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333121|AF339795|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000077947|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000077947|-1.3071000|-0.4394283	chr13	 99929771	 99930541	+	NA	NA	NA	NA	UBAC2	NA	chr13:99919771-99940542	inter
CUST_27416_PI429285431	0.91388166	A	0.9025452	A	1.00788878909776	0	lncRNA	28981-1_{1..3000}	n324586|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039918|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039918|-0.0383216|-0.3099760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324586|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000039918|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000039918|-0.0383216|-0.3099760	chr6	 14388336	 14391335	-	NA	NA	NA	NA	NA	"hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-89.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.71;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.20;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-41.30;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30"	NA	inter
CUST_31810_PI429285431	2.512268	A	0.9007137	A	3.05580884724986	0	lncRNA	33547-1_{1..1577}	n338352|BC010517|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|746|NULL|0.0354263|-0.4176041	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338352|BC010517|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|746|NULL|0.0354263|-0.4176041	chr14	 65400530	 65402106	+	NA	NA	NA	NA	CHURC1-FNTB	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90chr14:65390530-65412086"	NA	inner
LNCA_21_P0013008	2.699247	A	2.4878974	A	1.1577707389311	0	lncRNA	TCONS_l2_00023995	NA	NA	NA	NA	XLOC_l2_012366	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012366), lincRNA [TCONS_l2_00023995]"	chr6:4274837-4274896	hs|6p25.1	Agilent_HUMAN_G3V2	TCONS_l2_00023995	TCONS_l2_00023995	chr6	  4274837	  4274896	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009718	0.9000604	A	0.89559394	A	1.0031007114477	0	lncRNA	TCONS_00027005	NA	NA	NA	NA	XLOC_013051	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013051), lincRNA [TCONS_00027005]"	chr19:36078148-36078207	hs|19q13.12	Agilent_HUMAN_G3V2	TCONS_00027005	TCONS_00027005	chr19	 36078148	 36078207	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_32_P88231	3.4886913	P	2.8424983	A	1.56503291551293	0	lncRNA	XR_132489	XR_132489	XR_132489	100505695	Hs.567958	LOC100505695	uncharacterized LOC100505695	ENST00000426475	THC2649796	NA	"PREDICTED: Homo sapiens hypothetical LOC100505695 (LOC100505695), miscRNA [XR_132489]"	chr2:171634562-171634621	hs|2q31.1	Agilent_HUMAN_G3V2	XR_132489	XR_132489	chr2	171634562	171634621	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1441_PI429285431	0.92405236	A	0.92366457	A	1.00026883167391	0	lncRNA	1430-1_{1..1253}	"transcript_id ""ENST00000462010.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000462010.1"" | genecode_v17"	chr3	112769759	112771011	-	ENSG00000241219.1	ENST00000462010.1	RP11-572M11.1	RP11-572M11.1-001	NA	NA	NA	inter
LNCA_21_P0009257	0.8996514	A	0.88868296	A	1.00763171749503	0	lncRNA	TCONS_00025435	NA	NA	NA	NA	XLOC_012254	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012254), lincRNA [TCONS_00025435]"	chr17:53290508-53323664	hs|17q22	Agilent_HUMAN_G3V2	TCONS_00025435	TCONS_00025435	chr17	 53290508	 53323664	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8027_PI429285431	9.527971	P	9.968249	P	0.736992580238429	0	lncRNA	9636-1_{1..788}	lnc-POM121L4P-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-POM121L4P-1:7	chr22	 21058599	 21059386	+	lnc-POM121L4P-1	lnc-POM121L4P-1:7	ENSG00000226287	TMEM191A	PI4KA	NA	chr22:21061979-21068894	inter
LNCA_21_P0007976	0.9023134	A	0.88590705	A	1.0114369224196	0	lncRNA	ENST00000439079	NA	NA	NA	NA	XLOC_010538	NA	ENST00000439079	THC2684438	NA	"BROAD Institute lincRNA (XLOC_010538), lincRNA [TCONS_00021614]"	chr13:26626473-26626414	hs|13q12.13	Agilent_HUMAN_G3V2	ENST00000439079	ENST00000439079	chr13	 26626414	 26626473	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011149	10.678321	P	10.829936	P	0.900242137856301	0	lncRNA	TCONS_l2_00006892	NA	NA	NA	NA	XLOC_l2_003758	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003758), lincRNA [TCONS_l2_00006892]"	chr13:64413154-64413213	hs|13q21.31	Agilent_HUMAN_G3V2	TCONS_l2_00006892	TCONS_l2_00006892	chr13	 64413154	 64413213	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009308	0.90650684	A	0.88685286	A	1.01371631808352	0	lncRNA	TCONS_00025601	NA	NA	NA	NA	XLOC_012429	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012429), lincRNA [TCONS_00025601]"	chr17:26590041-26589982	hs|17q11.2	Agilent_HUMAN_G3V2	TCONS_00025601	TCONS_00025601	chr17	 26589982	 26590041	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010031	0.91020495	A	0.8901167	A	1.01402150583048	0	lncRNA	TCONS_00028362	NA	NA	NA	NA	XLOC_013716	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013716), lincRNA [TCONS_00028362]"	chr20:26230371-26230312	hs|20p11.1	Agilent_HUMAN_G3V2	TCONS_00028362	TCONS_00028362	chr20	 26230312	 26230371	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47120_PI429285431	4.8815193	P	5.1602173	P	0.824334625230481	0	lncRNA	51202-1_{1..3000}	"gi|395759231|ref|NR_073032.1| Homo sapiens sprouty-related, EVH1 domain containing 3 (SPRED3), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,ensembl.GRCh37.72,ncbi,"	">gi|395759231|ref|NR_073032.1| Homo sapiens sprouty-related, EVH1 domain containing 3 (SPRED3), transcript variant 2, non-coding RNA"	Chr19	 38880932	 38883931	+	399473	NR_073032.1	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-68.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-58.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-69.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.80;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-55.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60"	NA	inter
LNCA_33_P3411773	6.8513346	P	7.203735	P	0.783279768343505	0	lncRNA	XR_109235	XR_109235	XR_109235	100130285	Hs.730224	LOC100130285	uncharacterized LOC100130285	NA	THC2486239	NA	"PREDICTED: Homo sapiens hypothetical LOC100130285 (LOC100130285), miscRNA [XR_109235]"	chr16:691098-691039	hs|16p13.3	Agilent_HUMAN_G3V2	XR_109235	XR_109235	chr16	   691039	   691098	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005824	0.9916097	A	4.8759594	P	0.0677164569046379	0	lncRNA	TCONS_00014983	NA	NA	NA	NA	XLOC_007064	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007064), lincRNA [TCONS_00014983]"	chr8:40156308-40156249	hs|8p11.21	Agilent_HUMAN_G3V2	TCONS_00014983	TCONS_00014983	chr8	 40156249	 40156308	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29896_PI429285431	1.28967	A	1.6356266	A	0.786786113559776	0	lncRNA	31659-1_{1..399}	n333971|M14260|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194315|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194315|1.9278200|-0.0756172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333971|M14260|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000194315|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000194315|1.9278200|-0.0756172	chr7	142099460	142099858	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_955_PI429285431	14.881454	P	14.77996	P	1.07288392516355	0	lncRNA	945-1_{1..197}	"transcript_id ""ENST00000449242.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000449242.1"" | genecode_v17"	chr2	 96811341	 96811537	-	ENSG00000228873.1	ENST00000449242.1	AC012307.2	AC012307.2-001	ASTL	NA	chr2:96801341-96804175	inter
CUST_16930_PI429285431	3.8239	P	4.142434	P	0.801884301483	0	lncRNA	18642-1_{1..3000}	lnc-ZNF100-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF100-3:1	chr19	 21751906	 21754905	-	lnc-ZNF100-3	lnc-ZNF100-3:1	XLOC_013263	linc-ZNF708-3	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-66.10;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.80;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50"	NA	inter
LNCA_21_P0007977	0.936021	A	0.9987243	A	0.957468347795086	0	lncRNA	ENST00000444744	NA	NA	NA	NA	XLOC_010543	NA	ENST00000444744	THC2723699	NA	"BROAD Institute lincRNA (XLOC_010543), lincRNA [TCONS_00021615]"	chr13:27810478-27810419	hs|13q12.2	Agilent_HUMAN_G3V2	ENST00000444744	ENST00000444744	chr13	 27810419	 27810478	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003390	0.92836356	A	0.9863026	A	0.960635454028596	0	lncRNA	ENST00000426240	NA	NA	NA	NA	XLOC_003658	NA	ENST00000426240	THC2723714	NA	"BROAD Institute lincRNA (XLOC_003658), lincRNA [TCONS_00007597]"	chr4:118293915-118293974	hs|4q26	Agilent_HUMAN_G3V2	ENST00000426240	ENST00000426240	chr4	118293915	118293974	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008829	4.655766	P	5.1253085	P	0.722193579750493	0	lncRNA	AK056763	NA	AK056763	NA	Hs.559844	XLOC_011286	NA	NA	THC2507977	NA	"BROAD Institute lincRNA (XLOC_011286), lincRNA [TCONS_00023963]"	chr15:65010368-65010427	hs|15q22.31	Agilent_HUMAN_G3V2	AK056763	AK056763	chr15	 65010368	 65010427	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49251_PI429285431	0.98651755	A	0.923028	A	1.044990299478	0	lncRNA	53069-1_{1..553}	hg19_lincRNAsTranscripts_TCONS_l2_00023711 range=chr5:34182932-34244901 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023711 range=chr5:34182932-34244901 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 34182932	 34183484	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7868_PI429285431	0.91229266	A	0.9177412	A	0.996230482396962	0	lncRNA	9490-1_{1..564}	lnc-CAPN7-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CAPN7-1:2	chr3	 15300053	 15300616	+	lnc-CAPN7-1	lnc-CAPN7-1:2	ENSG00000224660	AC087590.3	SH3BP5	"hg19_refFlat_SH3BP5:range=chr3:15297593-153739155'pad=0,hg19_refFlat_SH3BP5:range=chr3:15297593-153739155'pad=0 3'pad=0 strand=- repeatMasking=none,-101.80;hg19_refFlat_SH3BP5:range=chr3:15297593-153112435'pad=0,hg19_refFlat_SH3BP5:range=chr3:15297593-153112435'pad=0 3'pad=0 strand=- repeatMasking=none,-101.80chr3:15296357-15310460"	NA	inner
CUST_38532_PI429285431	0.9079222	A	2.754755	A	0.278002006334872	0	lncRNA	39544-1_{1..3000}	n383210|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jcf.2||2.2437500|-0.2154753	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383210|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002jcf.2||2.2437500|-0.2154753	chr17	 61934375	 61937374	+	NA	NA	NA	NA	CSH2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-91.90;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.00;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.60;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50chr17:61949372-61951089"	NA	inter
CUST_51962_PI429285431	0.9174362	A	0.9030919	A	1.00999230408075	0	lncRNA	55505-1_{1..292}	hg19_lincRNAsTranscripts_TCONS_l2_00016575 range=chr20:32905454-32943260 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016575 range=chr20:32905454-32943260 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr20	 32905454	 32905745	-	NA	NA	NA	NA	ITCH	NA	chr20:32951062-32953260	inter
LNCA_21_P0010227	0.900118	A	0.8953951	A	1.00327902911178	0	lncRNA	TCONS_00028983	NA	NA	NA	NA	XLOC_013896	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013896), lincRNA [TCONS_00028983]"	chr21:29044444-29044503	hs|21q21.3	Agilent_HUMAN_G3V2	TCONS_00028983	TCONS_00028983	chr21	 29044444	 29044503	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014559	0.8996392	A	0.8925951	A	1.00489453736016	0	lncRNA	ENST00000439938	XR_110301	XR_110301	NA	NA	LOC100507007	NA	ENST00000439938	THC2642249	NA	"PREDICTED: Homo sapiens hypothetical LOC100507007 (LOC100507007), miscRNA [XR_110301]"	chr15:27402907-27402848	hs|15q12	Agilent_HUMAN_G3V2	ENST00000439938	ENST00000439938	chr15	 27402848	 27402907	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009980	3.567133	P	3.5106997	P	1.0398917100549	0	lncRNA	TCONS_00028232	NA	NA	NA	NA	XLOC_013576	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013576), lincRNA [TCONS_00028232]"	chr20:54748023-54748082	hs|20q13.2	Agilent_HUMAN_G3V2	TCONS_00028232	TCONS_00028232	chr20	 54748023	 54748082	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007739	5.4221716	P	5.8621626	P	0.737139207144876	0	lncRNA	TCONS_00020869	NA	NA	NA	NA	XLOC_010151	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010151), lincRNA [TCONS_00020869]"	chr12:92641610-92641551	hs|12q22	Agilent_HUMAN_G3V2	TCONS_00020869	TCONS_00020869	chr12	 92641551	 92641610	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011368	0.9018147	A	0.8862203	A	1.0108678450103	0	lncRNA	THC2646226	NA	NA	NA	NA	XLOC_l2_004870	NA	NA	THC2646226	NA	"BROAD Institute lincRNA (XLOC_l2_004870), lincRNA [TCONS_l2_00009006]"	NA	NA	Agilent_HUMAN_G3V2	THC2646226	THC2646226	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005566	0.9069607	A	2.5103452	A	0.329104007641075	0	lncRNA	TCONS_00014160	NA	NA	NA	NA	XLOC_006138	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006138), lincRNA [TCONS_00014160]"	chr7:66821035-66821094	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_00014160	TCONS_00014160	chr7	 66821035	 66821094	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004230	4.961283	P	4.863311	P	1.07026792633557	0	lncRNA	TCONS_00009877	NA	NA	NA	NA	XLOC_004299	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004299), lincRNA [TCONS_00009877]"	chr5:14892556-14892615	hs|5p15.2	Agilent_HUMAN_G3V2	TCONS_00009877	TCONS_00009877	chr5	 14892556	 14892615	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004462	6.858782	P	7.560187	P	0.614973010084165	0	lncRNA	TCONS_00010540	NA	NA	NA	NA	XLOC_005067	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005067), lincRNA [TCONS_00010540]"	chr5:161337299-161337240	hs|5q34	Agilent_HUMAN_G3V2	TCONS_00010540	TCONS_00010540	chr5	161337240	161337299	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003231	4.7865868	P	5.0235524	P	0.848528133992683	0	lncRNA	TCONS_00006853	NA	NA	NA	NA	XLOC_002654	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002654), lincRNA [TCONS_00006853]"	chr3:52312947-52314314	hs|3p21.1	Agilent_HUMAN_G3V2	TCONS_00006853	TCONS_00006853	chr3	 52312947	 52314314	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004124	0.9089794	A	0.8934712	A	1.01080744818169	0	lncRNA	ENST00000505050	NA	NA	NA	NA	XLOC_004810	NA	ENST00000505050	NA	NA	"BROAD Institute lincRNA (XLOC_004810), lincRNA [TCONS_00009648]"	chr5:44698595-44698536	hs|5p12	Agilent_HUMAN_G3V2	ENST00000505050	ENST00000505050	chr5	 44698536	 44698595	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51943_PI429285431	3.0107841	A	3.2955794	P	0.820858069824132	0	lncRNA	55485-1_{1..437}	hg19_lincRNAsTranscripts_TCONS_l2_00016214 range=chr20:25715264-25733367 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016214 range=chr20:25715264-25733367 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 25715264	 25715700	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_13547_PI429285431	2.7786806	A	3.285471	P	0.703786428896068	0	lncRNA	15187-1_{1..1274}	lnc-POLR1A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLR1A-1:1	chr2	 86225094	 86226367	-	lnc-POLR1A-1	lnc-POLR1A-1:1	XLOC_002194	linc-ST3GAL5-1	NA	"hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.20;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-33.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.10"	NA	inter
LNCA_21_P0001581	0.9309818	A	0.9954963	A	0.956267069273324	0	lncRNA	TCONS_00001679	NA	NA	NA	NA	XLOC_001025	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001025), lincRNA [TCONS_00001679]"	chr1:151121116-151121057	hs|1q21.3	Agilent_HUMAN_G3V2	TCONS_00001679	TCONS_00001679	chr1	151121057	151121116	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010043	0.928094	A	0.9850703	A	0.961276719717132	0	lncRNA	TCONS_00028408	NA	NA	NA	NA	XLOC_013759	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013759), lincRNA [TCONS_00028408]"	chr20:44216840-44216781	hs|20q13.12	Agilent_HUMAN_G3V2	TCONS_00028408	TCONS_00028408	chr20	 44216781	 44216840	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_18797_PI429285431	1.0647563	A	0.9528092	A	1.08068577528247	0	lncRNA	20492-1_{1..893}	lnc-INTS9-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-INTS9-1:5	chr8	 28558406	 28559298	-	lnc-INTS9-1	lnc-INTS9-1:5	ENSG00000246339	CTD-2172A10.1	EXTL3	NA	chr8:28559153-28568770	inter
LNCA_21_P0007290	0.926604	A	0.9787959	A	0.96446988714361	0	lncRNA	TCONS_00019509	NA	NA	NA	NA	XLOC_009307	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009307), lincRNA [TCONS_00019509]"	chr11:122179205-122179264	hs|11q24.1	Agilent_HUMAN_G3V2	TCONS_00019509	TCONS_00019509	chr11	122179205	122179264	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35843_PI429285431	2.665559	A	3.524015	P	0.551542513604521	0	lncRNA	37243-1_{1..922}	n344514|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_62|NULL|-1.3443200|-0.1531482	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n344514|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_62|NULL|-1.3443200|-0.1531482	chr1	 22352001	 22352922	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002407	0.9134582	A	0.9213754	A	0.99452724552632	0	lncRNA	TCONS_00004156	NA	NA	NA	NA	XLOC_002002	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002002), lincRNA [TCONS_00004156]"	chr2:16651221-16651162	hs|2p24.3	Agilent_HUMAN_G3V2	TCONS_00004156	TCONS_00004156	chr2	 16651162	 16651221	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002420	0.9108474	A	0.91708475	A	0.995685930879739	0	lncRNA	TCONS_00004196	NA	NA	NA	NA	XLOC_002042	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002042), lincRNA [TCONS_00004196]"	chr2:31990352-31990202	hs|2p23.1	Agilent_HUMAN_G3V2	TCONS_00004196	TCONS_00004196	chr2	 31990202	 31990352	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16611_PI429285431	0.90437454	A	0.9020521	A	1.00161108914991	0	lncRNA	18311-1_{1..1121}	lnc-CHST8-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHST8-1:1	chr19	 34045974	 34047094	+	lnc-CHST8-1	lnc-CHST8-1:1	XLOC_013043	linc-CHST8	NA	NA	NA	inter
CUST_25982_PI429285431	3.5783193	P	3.9047046	P	0.797532214747545	0	lncRNA	27502-1_{1..1767}	lnc-ITGAX-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ITGAX-1:1	chr16	 31414558	 31416324	+	lnc-ITGAX-1	lnc-ITGAX-1:1	ENSG00000260757.1	RP11-120K18.2	ITGAD	"hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0,hg19_refFlat_FLJ25363:range=chr3:109129014-1092129865'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.20;hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0,hg19_refFlat_MKNK1:range=chr1:47024247-470598185'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-58.80;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.30;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0,hg19_refFlat_BTBD9:range=chr6:38142761-385621115'pad=0 3'pad=0 strand=- repeatMasking=none,-61.00;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-67.80chr16:31404633-31426020"	NA	inner
LNCA_21_P0006928	0.9013665	A	0.8993936	A	1.0013684455408	0	lncRNA	TCONS_00018366	NA	NA	NA	NA	XLOC_008652	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008652), lincRNA [TCONS_00018366]"	chr10:125121117-125121176	hs|10q26.13	Agilent_HUMAN_G3V2	TCONS_00018366	TCONS_00018366	chr10	125121117	125121176	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001424	2.2017074	A	2.631804	A	0.742212086600691	0	lncRNA	TCONS_00001281	NA	NA	NA	NA	XLOC_000567	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000567), lincRNA [TCONS_00001281]"	chr1:219618697-219618756	hs|1q41	Agilent_HUMAN_G3V2	TCONS_00001281	TCONS_00001281	chr1	219618697	219618756	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013196	0.9005579	A	0.89653116	A	1.00279502228949	0	lncRNA	TCONS_l2_00025852	NA	NA	NA	NA	XLOC_l2_013383	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013383), lincRNA [TCONS_l2_00025852]"	chr4:119542590-119542649	hs|4q26	Agilent_HUMAN_G3V2	TCONS_l2_00025852	TCONS_l2_00025852	chr4	119542590	119542649	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51557_PI429285431	1.5539302	A	0.9183288	A	1.55358524058274	0	lncRNA	55122-1_{1..1775}	hg19_lincRNAsTranscripts_TCONS_l2_00010591 range=chr17:17323763-17327289 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00010591 range=chr17:17323763-17327289 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr17	 17323763	 17325537	+	NA	NA	NA	NA	NA	NA	NA	inner
CUST_48494_PI429285431	5.0346694	P	4.1113048	P	1.89653316433245	0	lncRNA	52347-1_{1..611}	hg19_lincRNAsTranscripts_TCONS_l2_00001894 range=chr1:243251173-243252871 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001894 range=chr1:243251173-243252871 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	243251173	243251783	-	NA	NA	NA	NA	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50"	NA	inter
CUST_20276_PI429285431	1.5146922	A	0.9047851	A	1.52616093114616	0	lncRNA	21919-1_{1..731}	lnc-USP7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-USP7-1:1	chr16	  9200368	  9201098	-	lnc-USP7-1	lnc-USP7-1:1	ENSG00000260349.1	RP11-473I1.5	C16orf72	NA	chr16:9190368-9211031	inner
LNCA_21_P0001584	6.078458	P	6.262167	P	0.880436584845674	0	lncRNA	TCONS_00001692	NA	NA	NA	NA	XLOC_001050	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001050), lincRNA [TCONS_00001692]"	chr1:157019905-157019846	hs|1q23.1	Agilent_HUMAN_G3V2	TCONS_00001692	TCONS_00001692	chr1	157019846	157019905	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012218	0.9027123	A	0.8861787	A	1.01152613810344	0	lncRNA	TCONS_l2_00017420	NA	NA	NA	NA	XLOC_l2_009136	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009136), lincRNA [TCONS_l2_00017420]"	chr21:15282838-15282451	hs|21q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00017420	TCONS_l2_00017420	chr21	 15282451	 15282838	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008174	0.9032985	A	0.88611877	A	1.011979264886	0	lncRNA	TCONS_00022039	NA	NA	NA	NA	XLOC_010638	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010638), lincRNA [TCONS_00022039]"	chr13:63321907-63321848	hs|13q21.31	Agilent_HUMAN_G3V2	TCONS_00022039	TCONS_00022039	chr13	 63321848	 63321907	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15715_PI429285431	1.1747155	A	0.9187755	A	1.19411352425653	0	lncRNA	17401-1_{1..397}	lnc-DHX37-10:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DHX37-10:5	chr12	127246761	127247157	-	lnc-DHX37-10	lnc-DHX37-10:5	XLOC_010245	linc-DHX37-3	NA	NA	NA	inter
LNCA_21_P0007579	0.90423125	A	0.88620895	A	1.01257045871553	0	lncRNA	TCONS_00020467	NA	NA	NA	NA	XLOC_009800	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009800), lincRNA [TCONS_00020467]"	chr12:70220851-70220910	hs|12q15	Agilent_HUMAN_G3V2	TCONS_00020467	TCONS_00020467	chr12	 70220851	 70220910	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52191_PI429285431	7.0660486	P	7.069675	P	0.997489527584303	0	lncRNA	55707-1_{1..1187}	hg19_lincRNAsTranscripts_TCONS_l2_00017665 range=chr22:25844098-25857623 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017665 range=chr22:25844098-25857623 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 25844098	 25845284	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002181	0.9110865	A	0.8912253	A	1.01386193262869	0	lncRNA	TCONS_00003591	NA	NA	NA	NA	XLOC_001377	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001377), lincRNA [TCONS_00003591]"	chr2:19719363-19719422	hs|2p24.1	Agilent_HUMAN_G3V2	TCONS_00003591	TCONS_00003591	chr2	 19719363	 19719422	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44386_PI429285431	0.9105397	A	1.0960753	A	0.879322567140433	0	lncRNA	49006-1_{1..3000}	"gi|324120888|ref|NR_037913.1| Homo sapiens ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase (RCHY1), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|324120888|ref|NR_037913.1| Homo sapiens ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase (RCHY1), transcript variant 4, non-coding RNA"	Chr4	 76404247	 76407246	-	25898	NR_037913.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002896	0.90077716	A	0.89286757	A	1.00549756646904	0	lncRNA	ENST00000491909	NA	NA	NA	NA	XLOC_003304	NA	ENST00000491909	NA	NA	"BROAD Institute lincRNA (XLOC_003304), lincRNA [TCONS_00005860]"	chr3:157694487-157694428	hs|3q25.32	Agilent_HUMAN_G3V2	ENST00000491909	ENST00000491909	chr3	157694428	157694487	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15722_PI429285431	9.885895	P	9.816215	P	1.04948387483226	0	lncRNA	17407-1_{1..1113}	lnc-RP11-419C23.1.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-419C23.1.1-2:1	chr8	 36839153	 36840265	-	lnc-RP11-419C23.1.1-2	lnc-RP11-419C23.1.1-2:1	XLOC_007051	linc-DUSP26-3	NA	NA	NA	inter
CUST_44684_PI429285431	0.92620647	A	1.0946708	A	0.889789309335914	0	lncRNA	49244-1_{1..983}	"gi|254750682|ref|NR_026775.2| Homo sapiens long intergenic non-protein coding RNA 240 (LINC00240), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254750682|ref|NR_026775.2| Homo sapiens long intergenic non-protein coding RNA 240 (LINC00240), non-coding RNA"	Chr6	 26924772	 26925754	+	100133205	NR_026775.2	NA	NA	NA	NA	NA	inter
CUST_1713_PI429285431	0.92826635	A	0.97938836	A	0.9651853948346	0	lncRNA	1698-1_{1..571}	"transcript_id ""ENST00000512563.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000512563.1"" | genecode_v17"	chr4	 23236248	 23236818	-	ENSG00000249547.1	ENST00000512563.1	RP11-453O5.1	RP11-453O5.1-001	NA	NA	NA	inter
CUST_40307_PI429285431	0.926673	A	0.9232243	A	1.00239331610116	0	lncRNA	41110-1_{1..3000}	n408336|NR_029405|lncRNA|Homosapiens||RefGeneNoncode|NR_029405||4.7024300|-0.2162360	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n408336|NR_029405|lncRNA|Homosapiens||RefGeneNoncode|NR_029405||4.7024300|-0.2162360	chr20	  5451841	  5454840	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004398	0.9257259	A	0.97383314	A	0.967204431634504	0	lncRNA	TCONS_00010348	NA	NA	NA	NA	XLOC_004836	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004836), lincRNA [TCONS_00010348]"	chr5:57362689-57362630	hs|5q11.2	Agilent_HUMAN_G3V2	TCONS_00010348	TCONS_00010348	chr5	 57362630	 57362689	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12509_PI429285431	0.9234656	A	0.954506	A	0.97871424293576	0	lncRNA	14120-1_{1..2758}	lnc-RNASEH1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-RNASEH1-4:2	chr2	  4021135	  4023892	-	lnc-RNASEH1-4	lnc-RNASEH1-4:2	XLOC_001954	linc-RNASEH1-7	NA	NA	NA	inter
LNCA_21_P0003121	0.9223653	A	0.9518776	A	0.979751444510719	0	lncRNA	TCONS_00006518	NA	NA	NA	NA	XLOC_003142	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003142), lincRNA [TCONS_00006518]"	chr3:59627512-59627453	hs|3p14.2	Agilent_HUMAN_G3V2	TCONS_00006518	TCONS_00006518	chr3	 59627453	 59627512	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44780_PI429285431	2.9705515	A	3.2354035	P	0.83228411084922	0	lncRNA	49319-1_{1..701}	"gi|397139146|ref|XR_158796.1| PREDICTED: Homo sapiens KCNQ5 intronic transcript 1 (non-protein coding) (KCNQ5-IT1), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|397139146|ref|XR_158796.1| PREDICTED: Homo sapiens KCNQ5 intronic transcript 1 (non-protein coding) (KCNQ5-IT1), misc_RNA"	Chr6	 73340085	 73340785	+	100507381	XR_158796.1	NA	NA	NA	NA	NA	inter
CUST_48981_PI429285431	3.8983066	P	3.8094125	P	1.06355460056127	0	lncRNA	52819-1_{1..2905}	hg19_lincRNAsTranscripts_TCONS_l2_00019088 range=chr3:195351981-195356380 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019088 range=chr3:195351981-195356380 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	195351981	195354885	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7969_PI429285431	5.7729297	P	5.4205055	P	1.27670410682741	0	lncRNA	9581-1_{1..2260}	lnc-RBKS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-RBKS-1:1	chr2	 28429351	 28431610	-	lnc-RBKS-1	lnc-RBKS-1:1	ENSG00000250468	ENST00000506391	BRE	NA	chr2:28419351-28439830	inner
LNCA_21_P0009913	0.89993364	A	0.8900337	A	1.00688571376039	0	lncRNA	ENST00000423233	NA	NA	NA	NA	XLOC_013802	NA	ENST00000423233	NA	NA	"BROAD Institute lincRNA (XLOC_013802), lincRNA [TCONS_00028068]"	chr20:52416424-52416365	hs|20q13.2	Agilent_HUMAN_G3V2	ENST00000423233	ENST00000423233	chr20	 52416365	 52416424	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10191_PI429285431	1.0126704	A	0.98045623	A	1.02258032275341	0	lncRNA	11716-1_{1..957}	lnc-ZC3H12C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZC3H12C-1:1	chr11	109843234	109844190	+	lnc-ZC3H12C-1	lnc-ZC3H12C-1:1	XLOC_009274	linc-ZC3H12C	NA	NA	NA	inter
LNCA_21_P0001461	2.2989428	A	2.9823692	P	0.622684641184006	0	lncRNA	TCONS_00001381	NA	NA	NA	NA	XLOC_000685	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000685), lincRNA [TCONS_00001381]"	chr1:4615970-4615911	hs|1p36.32	Agilent_HUMAN_G3V2	TCONS_00001381	TCONS_00001381	chr1	  4615911	  4615970	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31089_PI429285431	8.134704	P	8.35271	P	0.859752910623735	0	lncRNA	32880-1_{1..296}	n337368|DQ650707|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393016|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393016|-1.1377000|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337368|DQ650707|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000393016|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000393016|-1.1377000|-1.0000000	chr19	 12902289	 12902584	+	NA	NA	NA	NA	PRDX2	NA	chr19:12907634-12912585	inner
CUST_31676_PI429285431	0.92918587	A	0.92867815	A	1.00035198661927	0	lncRNA	33424-1_{1..1220}	n338200|AF090945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|592|NULL|-0.9316380|-0.3105873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338200|AF090945|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|592|NULL|-0.9316380|-0.3105873	chr1	117098857	117100076	+	NA	NA	NA	NA	CD58	NA	chr1:117088857-117109970	inner
CUST_44059_PI429285431	2.4414647	A	2.1958034	A	1.18563611618821	0	lncRNA	48733-1_{1..3000}	"gi|301129268|ref|NR_034176.1| Homo sapiens RUN and FYVE domain containing 4 (RUFY4), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|301129268|ref|NR_034176.1| Homo sapiens RUN and FYVE domain containing 4 (RUFY4), transcript variant 2, non-coding RNA"	Chr2	218899657	218902656	+	285180	NR_034176.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001361	0.9107717	A	1.6954923	A	0.580464362124785	0	lncRNA	TCONS_00001088	NA	NA	NA	NA	XLOC_000332	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000332), lincRNA [TCONS_00001088]"	chr1:108593339-108594973	hs|1p13.3	Agilent_HUMAN_G3V2	TCONS_00001088	TCONS_00001088	chr1	108593339	108594973	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32153_PI429285431	0.9127025	A	1.189336	A	0.825515094445558	0	lncRNA	33853-1_{1..1662}	n338720|BC039373|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1140|NULL|-0.7841420|-0.2983277	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338720|BC039373|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1140|NULL|-0.7841420|-0.2983277	chr13	 48963706	 48965367	-	NA	NA	NA	NA	RB1	NA	chr13:48953706-49028803	inner
CUST_48217_PI429285431	1.4531341	A	0.9153502	A	1.45174080865942	0	lncRNA	52080-1_{1..681}	hg19_lincRNAsTranscripts_TCONS_l2_00001391 range=chr1:95144637-95171735 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001391 range=chr1:95144637-95171735 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	 95144637	 95145317	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_27314_PI429285431	0.92151725	A	0.9001154	A	1.01494521126368	0	lncRNA	28874-1_{1..325}	n324468|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041312|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041312|-1.1129200|-0.3550127	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324468|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000041312|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000041312|-1.1129200|-0.3550127	chr6	 80638308	 80638632	+	NA	NA	NA	NA	ELOVL4	NA	chr6:80628308-80651046	inner
CUST_28689_PI429285431	4.0907764	P	4.196132	P	0.929575789616065	0	lncRNA	30387-1_{1..714}	n326076|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046677|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046677|-1.0099400|-0.2939311	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326076|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000046677|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000046677|-1.0099400|-0.2939311	chr10	  7615174	  7615887	+	NA	NA	NA	NA	ITIH5	"hg19_refFlat_ITIH5:range=chr10:7605045-76615535'pad=0,hg19_refFlat_ITIH5:range=chr10:7605045-76615535'pad=0 3'pad=0 strand=- repeatMasking=none,-101.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-50.80;hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0,hg19_refFlat_METTL10:range=chr10:126449072-1264804025'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ITIH5:range=chr10:7605045-77088555'pad=0,hg19_refFlat_ITIH5:range=chr10:7605045-77088555'pad=0 3'pad=0 strand=- repeatMasking=none,-101.80;hg19_refFlat_ITIH5:range=chr10:7614285-77088555'pad=0,hg19_refFlat_ITIH5:range=chr10:7614285-77088555'pad=0 3'pad=0 strand=- repeatMasking=none,-101.80chr10:7605174-7628533"	NA	inner
LNCA_21_P0013144	0.90532255	A	0.8937944	A	1.00802271555651	0	lncRNA	ENST00000432484	NA	NA	NA	NA	XLOC_l2_013040	NA	ENST00000432484	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013040), lincRNA [TCONS_l2_00025423]"	chr6:75346308-75304299	hs|6q13	Agilent_HUMAN_G3V2	ENST00000432484	ENST00000432484	chr6	 75304299	 75346308	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13120_PI429285431	2.7043912	A	3.3375585	P	0.644759352426369	0	lncRNA	14745-1_{1..385}	lnc-UBAP1L-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-UBAP1L-1:1	chr15	 65381853	 65382237	-	lnc-UBAP1L-1	lnc-UBAP1L-1:1	XLOC_011506	linc-RASL12	LOC390595	NA	chr15:65385342-65391887	inter
CUST_21144_PI429285431	5.242993	P	5.6619215	P	0.747979948166359	0	lncRNA	22769-1_{1..726}	lnc-MVP-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MVP-1:1	chr16	 29879185	 29879910	+	lnc-MVP-1	lnc-MVP-1:1	ENSG00000214725.3	CTD-2574D22.5	SEZ6L2	NA	chr16:29882480-29889371	inter
LNCA_21_P0013598	0.98774624	A	1.0177515	A	0.979416726671919	0	lncRNA	TCONS_l2_00029021	NA	NA	NA	NA	XLOC_l2_015011	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015011), lincRNA [TCONS_l2_00029021]"	chr9:128019265-128019324	hs|9q33.3	Agilent_HUMAN_G3V2	TCONS_l2_00029021	TCONS_l2_00029021	chr9	128019265	128019324	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51732_PI429285431	1.0247902	A	0.93310744	A	1.06561238852019	0	lncRNA	55285-1_{1..1204}	hg19_lincRNAsTranscripts_TCONS_l2_00011996 range=chr18:15305583-15308748 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011996 range=chr18:15305583-15308748 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr18	 15305583	 15306786	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005826	6.8317075	P	6.8418646	P	0.992984360084501	0	lncRNA	TCONS_00014986	NA	NA	NA	NA	XLOC_007066	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007066), lincRNA [TCONS_00014986]"	chr8:40810882-40810823	hs|8p11.21	Agilent_HUMAN_G3V2	TCONS_00014986	TCONS_00014986	chr8	 40810823	 40810882	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005355	0.9136994	A	0.92165637	A	0.994499830305307	0	lncRNA	TCONS_00013350	NA	NA	NA	NA	XLOC_005989	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005989), lincRNA [TCONS_00013350]"	chr7:13783143-13783202	hs|7p21.3	Agilent_HUMAN_G3V2	TCONS_00013350	TCONS_00013350	chr7	 13783143	 13783202	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42155_PI429285431	11.775231	P	10.640869	P	2.19521462773081	0	lncRNA	44189-1_{1..117}	ENST00000390165 ncrna:miRNA chromosome:GRCh37:11:29298236:29298352:1 gene:ENSG00000211499 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000390165 ncrna:miRNA chromosome:GRCh37:11:29298236:29298352:1 gene:ENSG00000211499 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 29298236	 29298352	+	ENSG00000211499	ENST00000390165	NA	NA	NA	NA	NA	inter
CUST_47970_PI429285431	0.9087994	A	0.91269445	A	0.997303798372557	0	lncRNA	51861-1_{1..3000}	"gi|410172711|ref|XR_171936.1| PREDICTED: Homo sapiens uncharacterized LOC100129223 (LOC100129223), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|410172711|ref|XR_171936.1| PREDICTED: Homo sapiens uncharacterized LOC100129223 (LOC100129223), misc_RNA"	NA	NA	NA	NA	NA	XR_171936.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008954	5.762878	P	6.221412	P	0.727725363943943	0	lncRNA	TCONS_00024430	NA	NA	NA	NA	XLOC_011747	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011747), lincRNA [TCONS_00024430]"	chr16:62164488-62164547	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024430	TCONS_00024430	chr16	 62164488	 62164547	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010111	0.9088139	A	0.8882454	A	1.01435911348692	0	lncRNA	TCONS_00028633	NA	NA	NA	NA	XLOC_013683	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013683), lincRNA [TCONS_00028633]"	chr20:22491299-22491240	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028633	TCONS_00028633	chr20	 22491240	 22491299	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27631_PI429285431	0.92208934	A	0.92412704	A	0.998588570994336	0	lncRNA	29209-1_{1..1754}	n324835|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171686|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171686|-0.1034240|-0.2652628	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324835|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000171686|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000171686|-0.1034240|-0.2652628	chr21	 28342603	 28344356	+	NA	NA	NA	NA	ADAMTS5	NA	chr21:28332603-28339439	inter
CUST_29657_PI429285431	5.152938	P	4.6054955	P	1.4614925753424	0	lncRNA	31419-1_{1..453}	n333279|AY034634|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083498|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083498|2.5126600|-0.1245648	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333279|AY034634|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000083498|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000083498|2.5126600|-0.1245648	chr12	  8074142	  8074594	-	NA	NA	NA	NA	SLC2A3	NA	chr12:8071824-8088504	inner
CUST_51648_PI429285431	0.9154979	A	0.8989868	A	1.01151036265542	0	lncRNA	55218-1_{1..1703}	hg19_lincRNAsTranscripts_TCONS_l2_00011381 range=chr17:58209084-58213029 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011381 range=chr17:58209084-58213029 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 58209084	 58210786	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_32997_PI429285431	2.3648887	A	3.5598612	P	0.436794773863309	0	lncRNA	34612-1_{1..805}	n339679|BC042809|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2123|NULL|-0.9596440|-0.2600820	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339679|BC042809|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2123|NULL|-0.9596440|-0.2600820	chr20	 42193357	 42194161	+	NA	NA	NA	NA	SGK2	NA	chr20:42187635-42214273	inner
CUST_1394_PI429285431	4.865667	P	5.2912955	P	0.744514318448878	0	lncRNA	1383-1_{1..1014}	"transcript_id ""ENST00000464131.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000464131.1"" | genecode_v17"	chr3	 81296244	 81297257	-	ENSG00000241593.1	ENST00000464131.1	RP11-520D19.2	RP11-520D19.2-002	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.70"	NA	inter
CUST_20965_PI429285431	0.96159554	A	0.9967788	A	0.975907787091238	0	lncRNA	22596-1_{1..3000}	lnc-AP000552.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP000552.1-2:1	chr22	 21546011	 21549010	+	lnc-AP000552.1-2	lnc-AP000552.1-2:1	ENSG00000215498.4	KB-1183D5.11	NA	NA	NA	inter
CUST_47598_PI429285431	3.051241	A	2.541963	A	1.42333770475082	0	lncRNA	51601-1_{1..1715}	"gi|341915922|ref|XR_132685.1| PREDICTED: Homo sapiens uncharacterized LOC100129291 (LOC100129291), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|341915922|ref|XR_132685.1| PREDICTED: Homo sapiens uncharacterized LOC100129291 (LOC100129291), misc_RNA"	NA	NA	NA	NA	NA	XR_132685.1	NA	NA	NA	NA	NA	Unknown
CUST_20596_PI429285431	2.0062008	A	3.124521	A	0.460629846926868	0	lncRNA	22235-1_{1..537}	lnc-AL136115.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL136115.1-2:1	chr1	 32256742	 32257278	+	lnc-AL136115.1-2	lnc-AL136115.1-2:1	ENSG00000254545.1	RP11-84A19.3	SPOCD1	"hg19_refFlat_SPOCD1:range=chr1:32256204-322809345'pad=0,hg19_refFlat_SPOCD1:range=chr1:32256204-322809345'pad=0 3'pad=0 strand=- repeatMasking=none,-96.20chr1:32256025-32266923"	NA	inner
LNCA_21_P0013785	3.4047947	P	2.614799	A	1.72906930906013	0	lncRNA	BC017041	NA	BC017041	NA	Hs.556850	XLOC_l2_015585	NA	NA	THC2528335	NA	"BROAD Institute lincRNA (XLOC_l2_015585), lincRNA [TCONS_l2_00030310]"	chrX:102161665-102161724	hs|Xq22.1	Agilent_HUMAN_G3V2	BC017041	BC017041	chrX	102161665	102161724	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008360	1.5953715	A	3.6739035	P	0.236755197053909	0	lncRNA	TCONS_00022563	NA	NA	NA	NA	XLOC_010881	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010881), lincRNA [TCONS_00022563]"	chr14:77432137-77432196	hs|14q24.3	Agilent_HUMAN_G3V2	TCONS_00022563	TCONS_00022563	chr14	 77432137	 77432196	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12833_PI429285431	7.554459	P	7.515571	P	1.02732168274882	0	lncRNA	14460-1_{1..864}	lnc-MYC-2:34	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MYC-2:34	chr8	129113226	129114089	+	lnc-MYC-2	lnc-MYC-2:34	XLOC_006925	linc-EFR3A-4	NA	NA	NA	inter
LNCA_21_P0013616	0.91976815	A	0.930979	A	0.992259345302354	0	lncRNA	AK092343	NA	AK092343	NA	NA	FLJ35024	uncharacterized LOC401491	NA	THC2515895	NA	"BROAD Institute lincRNA (XLOC_l2_015098), lincRNA [TCONS_l2_00029171]"	chr9:2423586-2423527	hs|9p24.2	Agilent_HUMAN_G3V2	AK092343	AK092343	chr9	  2423527	  2423586	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33508_PI429285431	2.064355	A	1.091907	A	1.9621672250467	0	lncRNA	35080-1_{1..2781}	n340247|AK094722|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2708|NULL|-1.3040900|-0.4221166	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340247|AK094722|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2708|NULL|-1.3040900|-0.4221166	chr4	146578403	146581183	+	NA	NA	NA	NA	MMAA	NA	chr4:146568403-146581187	inner
CUST_16838_PI429285431	8.992593	P	8.943784	P	1.03441062568077	0	lncRNA	18546-1_{1..999}	lnc-C5orf47-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C5orf47-2:1	chr5	173669685	173670683	+	lnc-C5orf47-2	lnc-C5orf47-2:1	XLOC_004645	linc-MSX2-5	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20"	NA	inter
CUST_14660_PI429285431	0.9245552	A	0.90317714	A	1.01492847498414	0	lncRNA	16329-1_{1..491}	lnc-RP11-168K9.2.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-168K9.2.1-3:2	chr11	127206660	127207150	+	lnc-RP11-168K9.2.1-3	lnc-RP11-168K9.2.1-3:2	XLOC_009325	linc-FLI1-3	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70"	NA	inter
CUST_24275_PI429285431	1.920737	A	1.6657182	A	1.19335129369039	0	lncRNA	25826-1_{1..433}	lnc-C15orf54-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C15orf54-1:2	chr15	 39461708	 39462140	+	lnc-C15orf54-1	lnc-C15orf54-1:2	ENSG00000259423.1	RP11-265N7.2	NA	NA	NA	inter
CUST_47220_PI429285431	5.6002903	P	5.8981304	P	0.813469353388694	0	lncRNA	51295-1_{1..1617}	"gi|333470689|ref|NR_038240.1| Homo sapiens long intergenic non-protein coding RNA 658 (LINC00658), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|333470689|ref|NR_038240.1| Homo sapiens long intergenic non-protein coding RNA 658 (LINC00658), transcript variant 2, non-coding RNA"	Chr20	  5412603	  5414219	-	100507629	NR_038240.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0011258	6.755954	P	6.7044086	P	1.03637448308384	0	lncRNA	TCONS_l2_00007925	NA	NA	NA	NA	XLOC_l2_004315	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004315), lincRNA [TCONS_l2_00007925]"	chr14:103556285-103556344	hs|14q32.32	Agilent_HUMAN_G3V2	TCONS_l2_00007925	TCONS_l2_00007925	chr14	103556285	103556344	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16533_PI429285431	0.9176583	A	1.9383087	A	0.492894094193062	0	lncRNA	18232-1_{1..1343}	lnc-B4GALNT4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-B4GALNT4-1:1	chr11	   357466	   358808	+	lnc-B4GALNT4-1	lnc-B4GALNT4-1:1	XLOC_009017	linc-B4GALNT4-1	NA	NA	NA	inter
CUST_15745_PI429285431	0.9290991	A	0.9290434	A	1.00003860904327	0	lncRNA	17432-1_{1..938}	lnc-CHMP2B-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CHMP2B-2:5	chr3	 86768368	 86769305	+	lnc-CHMP2B-2	lnc-CHMP2B-2:5	XLOC_002725	linc-CHMP2B-2	NA	NA	NA	inter
CUST_8489_PI429285431	3.4415576	P	3.97225	P	0.692222432472479	0	lncRNA	10053-1_{1..509}	lnc-EVX1-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-EVX1-10:1	chr7	 27161538	 27162046	+	lnc-EVX1-10	lnc-EVX1-10:1	ENSG00000253552	AC004080.12	HOXA3	"hg19_refFlat_HOXA3:range=chr7:27147534-271502595'pad=0,hg19_refFlat_HOXA3:range=chr7:27147534-271502595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_HOXD3:range=chr2:177033843-1770370025'pad=0,hg19_refFlat_HOXD3:range=chr2:177033843-1770370025'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40chr7:27151538-27166639"	NA	inner
CUST_9117_PI429285431	0.92990553	A	0.9301342	A	0.999841510594994	0	lncRNA	10636-1_{1..1570}	lnc-C1QTNF9-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1QTNF9-3:1	chr13	 24767255	 24768824	+	lnc-C1QTNF9-3	lnc-C1QTNF9-3:1	ENSG00000249940	ENST00000511001	SPATA13	"hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10chr13:24757255-24778436"	NA	inner
LNCA_21_P0005476	0.91195977	A	0.89274824	A	1.01340547621971	0	lncRNA	TCONS_00013729	NA	NA	NA	NA	XLOC_006377	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006377), lincRNA [TCONS_00013729]"	chr7:24235951-24235892	hs|7p15.3	Agilent_HUMAN_G3V2	TCONS_00013729	TCONS_00013729	chr7	 24235892	 24235951	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004935	0.91182214	A	0.89313984	A	1.01303379252642	0	lncRNA	TCONS_00011944	NA	NA	NA	NA	XLOC_005453	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005453), lincRNA [TCONS_00011944]"	chr6:123194343-123194402	hs|6q22.31	Agilent_HUMAN_G3V2	TCONS_00011944	TCONS_00011944	chr6	123194343	123194402	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004388	1.529741	A	1.0101564	A	1.43354242392933	0	lncRNA	ENST00000371487	NA	NA	NA	NA	XLOC_004823	NA	ENST00000371487	NA	NA	"BROAD Institute lincRNA (XLOC_004823), lincRNA [TCONS_00009666]"	chr5:54318510-54317346	hs|5q11.2	Agilent_HUMAN_G3V2	ENST00000371487	ENST00000371487	chr5	 54317346	 54318510	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48773_PI429285431	0.92440057	A	0.9295479	A	0.99643849996304	0	lncRNA	52611-1_{1..238}	hg19_lincRNAsTranscripts_TCONS_l2_00014186 range=chr2:200512413-200529926 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014186 range=chr2:200512413-200529926 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	200512413	200512650	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004252	1.6978701	A	1.1465873	A	1.465388094798	0	lncRNA	TCONS_00009962	NA	NA	NA	NA	XLOC_004384	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004384), lincRNA [TCONS_00009962]"	chr5:53941938-53941997	hs|5q11.2	Agilent_HUMAN_G3V2	TCONS_00009962	TCONS_00009962	chr5	 53941938	 53941997	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_96_PI429285431	0.9335941	A	0.92796457	A	1.00390971592376	0	lncRNA	88-1_{1..479}	"transcript_id ""ENST00000399592.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000399592.2"" | genecode_v17"	chr17	 36566042	 36566520	+	ENSG00000266103.1	ENST00000399592.2	RN7SL458P	RN7SL458P-201	SOCS7	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-36.90;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-42.70;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_SCIMP:range=chr17:5114096-51380505'pad=0,hg19_refFlat_SCIMP:range=chr17:5114096-51380505'pad=0 3'pad=0 strand=- repeatMasking=none,-89.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-40.60;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.50chr17:36556042-36561846"	NA	inter
CUST_42637_PI429285431	5.856091	P	5.7184353	P	1.10011603471214	0	lncRNA	45513-1_{1..129}	ENST00000516383 ncrna:snoRNA chromosome:GRCh37:12:122976660:122976788:-1 gene:ENSG00000252192 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516383 ncrna:snoRNA chromosome:GRCh37:12:122976660:122976788:-1 gene:ENSG00000252192 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	122976660	122976788	-	ENSG00000252192	ENST00000516383	NA	NA	ZCCHC8	NA	chr12:122966660-122985543	inner
CUST_34207_PI429285431	7.1660843	P	7.117711	P	1.03409827646757	0	lncRNA	35721-1_{1..3000}	n341065|D87470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3531|NULL|3.3258200|-0.2234910	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341065|D87470|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3531|NULL|3.3258200|-0.2234910	chr11	 73111844	 73114843	-	NA	NA	NA	NA	FAM168A	NA	chr11:73117028-73309228	inner
CUST_49188_PI429285431	8.151865	P	8.10979	P	1.02959360653567	0	lncRNA	53012-1_{1..528}	hg19_lincRNAsTranscripts_TCONS_l2_00021340 range=chr4:147033083-147034740 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021340 range=chr4:147033083-147034740 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr4	147033083	147033610	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0011280	3.6483107	P	2.7698202	A	1.83845071316815	0	lncRNA	ENST00000229465	NA	AK026100	NA	Hs.344000	XLOC_l2_004212	NA	ENST00000229465	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004212), lincRNA [TCONS_l2_00007762]"	chr14:62124361-62124420	hs|14q23.2	Agilent_HUMAN_G3V2	ENST00000229465	ENST00000229465	chr14	 62124361	 62124420	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9097_PI429285431	4.9238615	P	5.2416735	P	0.80228570673114	0	lncRNA	10619-1_{1..1666}	lnc-LDHD-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-LDHD-1:1	chr16	 75144226	 75145891	-	lnc-LDHD-1	lnc-LDHD-1:1	ENSG00000247033	AC099508.1	ZNRF1	NA	chr16:75134226-75144892	inner
LNCA_21_P0009149	2.8350048	A	2.6819613	A	1.11191268329432	0	lncRNA	BX647864	NA	BX647864	NA	Hs.639899	XLOC_012296	NA	NA	THC2607418	NA	"BROAD Institute lincRNA (XLOC_012296), lincRNA [TCONS_00025127]"	chr17:68063998-68064057	hs|17q24.3	Agilent_HUMAN_G3V2	BX647864	BX647864	chr17	 68063998	 68064057	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005102	0.9061731	A	0.90885127	A	0.998145355997066	0	lncRNA	TCONS_00012395	NA	NA	NA	NA	XLOC_005128	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005128), lincRNA [TCONS_00012395]"	chr6:2640564-2640623	hs|6p25.2	Agilent_HUMAN_G3V2	TCONS_00012395	TCONS_00012395	chr6	  2640564	  2640623	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011438	4.3033333	P	1.4700273	A	7.12705471450149	0	lncRNA	TCONS_l2_00009703	NA	NA	NA	NA	XLOC_l2_005198	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005198), lincRNA [TCONS_l2_00009703]"	chr16:34329487-34329546	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00009703	TCONS_l2_00009703	chr16	 34329487	 34329546	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013030	3.920278	P	4.2832084	P	0.77758354797484	0	lncRNA	TCONS_l2_00024305	NA	NA	NA	NA	XLOC_l2_012621	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012621), lincRNA [TCONS_l2_00024305]"	chr6:80780063-80780122	hs|6q14.1	Agilent_HUMAN_G3V2	TCONS_l2_00024305	TCONS_l2_00024305	chr6	 80780063	 80780122	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30022_PI429285431	0.9718853	A	1.0665746	A	0.936473905515716	0	lncRNA	31790-1_{1..505}	n334464|U15197|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218301|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218301|-1.3100700|-0.1646301	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334464|U15197|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218301|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218301|-1.3100700|-0.1646301	chr9	136130563	136131067	+	NA	NA	NA	NA	ABO	NA	chr9:136120563-136141068	inner
LNCA_21_P0003582	0.9022438	A	0.900633	A	1.0011171450206	0	lncRNA	TCONS_00008010	NA	NA	NA	NA	XLOC_003474	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003474), lincRNA [TCONS_00008010]"	chr4:23784329-23784388	hs|4p15.2	Agilent_HUMAN_G3V2	TCONS_00008010	TCONS_00008010	chr4	 23784329	 23784388	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014114	0.901705	A	0.8990887	A	1.00181512631956	0	lncRNA	XR_108482	XR_108482	XR_108482	NA	NA	LOC100506995	uncharacterized LOC100506995	NA	THC2495898	NA	"PREDICTED: Homo sapiens hypothetical LOC100506995 (LOC100506995), miscRNA [XR_108482]"	chr3:128221988-128222047	hs|3q21.3	Agilent_HUMAN_G3V2	XR_108482	XR_108482	chr3	128221988	128222047	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010709	0.9011051	A	0.89694434	A	1.00288818184685	0	lncRNA	ENST00000436262	NA	NA	NA	NA	XLOC_l2_000267	NA	ENST00000436262	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000267), lincRNA [TCONS_l2_00002081]"	chr1:74180805-74180864	hs|1p31.1	Agilent_HUMAN_G3V2	ENST00000436262	ENST00000436262	chr1	 74180805	 74180864	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003750	0.90118	A	1.4391992	A	0.688715857406646	0	lncRNA	TCONS_00008529	NA	NA	NA	NA	XLOC_004016	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004016), lincRNA [TCONS_00008529]"	chr4:90459498-90459439	hs|4q22.1	Agilent_HUMAN_G3V2	TCONS_00008529	TCONS_00008529	chr4	 90459439	 90459498	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43330_PI429285431	0.90858275	A	0.8957254	A	1.0089518663294	0	lncRNA	48158-1_{1..1499}	ENST00000455027 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:29977074:30019022:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>ENST00000455027 havana:non_coding chromosome:GRCh37:HSCHR6_MHC_QBL:29977074:30019022:-1 gene:ENSG00000235814 gene_biotype:non_coding transcript_biotype:non_coding	chrHSCHR6_MHC_QBL	 29977074	 29978572	-	ENSG00000235814	ENST00000455027	NA	NA	NA	"hg19_refFlat_ZNRD1:range=chr6_ssto_hap7:1359745-13629145'pad=0,hg19_refFlat_ZNRD1:range=chr6_ssto_hap7:1359745-13629145'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70;hg19_refFlat_ZNRD1:range=chr6_mcf_hap5:1411203-14143725'pad=0,hg19_refFlat_ZNRD1:range=chr6_mcf_hap5:1411203-14143725'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70;hg19_refFlat_ZNRD1:range=chr6_mann_hap4:1327899-13310665'pad=0,hg19_refFlat_ZNRD1:range=chr6_mann_hap4:1327899-13310665'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70;hg19_refFlat_ZNRD1:range=chr6_qbl_hap6:1322304-13254545'pad=0,hg19_refFlat_ZNRD1:range=chr6_qbl_hap6:1322304-13254545'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70;hg19_refFlat_ZNRD1:range=chr6_cox_hap2:1541408-15445745'pad=0,hg19_refFlat_ZNRD1:range=chr6_cox_hap2:1541408-15445745'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70;hg19_refFlat_ZNRD1:range=chr6:30029302-300324745'pad=0,hg19_refFlat_ZNRD1:range=chr6:30029302-300324745'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70;hg19_refFlat_ZNRD1:range=chr6_apd_hap1:1269539-12727055'pad=0,hg19_refFlat_ZNRD1:range=chr6_apd_hap1:1269539-12727055'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70;hg19_refFlat_ZNRD1:range=chr6_dbb_hap3:1323032-13261985'pad=0,hg19_refFlat_ZNRD1:range=chr6_dbb_hap3:1323032-13261985'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.70"	NA	Unknown
CUST_48201_PI429285431	3.1367035	A	3.204457	P	0.954122558745918	0	lncRNA	52064-1_{1..711}	"gi|397138600|ref|XR_113284.2| PREDICTED: Homo sapiens uncharacterized LOC100134216 (LOC100134216), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397138600|ref|XR_113284.2| PREDICTED: Homo sapiens uncharacterized LOC100134216 (LOC100134216), misc_RNA"	NA	NA	NA	NA	NA	XR_113284.2	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004209	1.0612624	A	0.8870141	A	1.12837632383987	0	lncRNA	TCONS_00009848	NA	NA	NA	NA	XLOC_004260	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004260), lincRNA [TCONS_00009848]"	chr5:3344812-3344871	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00009848	TCONS_00009848	chr5	  3344812	  3344871	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29317_PI429285431	1.907701	A	1.8623664	A	1.03192248228352	0	lncRNA	31068-1_{1..631}	n332505|DQ925678|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468684|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468684|2.1465600|-0.0894129	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332505|DQ925678|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000468684|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000468684|2.1465600|-0.0894129	chr9	134473664	134474294	-	NA	NA	NA	NA	RAPGEF1	NA	chr9:134463664-134507278	inner
LNCA_21_P0006545	0.91155887	A	0.8908037	A	1.01449036968513	0	lncRNA	TCONS_00017362	NA	NA	NA	NA	XLOC_008208	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008208), lincRNA [TCONS_00017362]"	chrX:109700126-109700067	hs|Xq23	Agilent_HUMAN_G3V2	TCONS_00017362	TCONS_00017362	chrX	109700067	109700126	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014438	0.91220653	A	0.8920921	A	1.01403990703319	0	lncRNA	XR_109807	XR_109807	XR_109807	NA	NA	LOC100506176	uncharacterized LOC100506176	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506176 (LOC100506176), miscRNA [XR_109807]"	chr4:176734060-176734119	hs|4q34.2	Agilent_HUMAN_G3V2	XR_109807	XR_109807	chr4	176734060	176734119	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31468_PI429285431	1.0406923	A	0.9067036	A	1.09732334269122	0	lncRNA	33235-1_{1..3000}	n337948|BC040579|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|333|NULL|-0.5628490|-0.2538815	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,UCSC,"	>n337948|BC040579|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|333|NULL|-0.5628490|-0.2538815	chr15	 70863296	 70866295	-	NA	NA	NA	NA	NA	"hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0,hg19_refFlat_SLC2A14:range=chr12:7966912-80160515'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30"	NA	inter
CUST_23827_PI429285431	0.9109742	A	1.0083332	A	0.934742567619903	0	lncRNA	25390-1_{1..2194}	lnc-PMFBP1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PMFBP1-4:2	chr16	 72698791	 72700984	-	lnc-PMFBP1-4	lnc-PMFBP1-4:2	ENSG00000261008.2	AC004158.2	NA	NA	NA	inter
CUST_11873_PI429285431	5.998662	P	6.0693374	P	0.95219212341206	0	lncRNA	13454-1_{1..2450}	lnc-DMRT2-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-DMRT2-1:4	chr9	  1047151	  1049600	+	lnc-DMRT2-1	lnc-DMRT2-1:4	XLOC_007262	linc-DMRT2	DMRT2	NA	chr9:1050346-1057554	inter
CUST_44255_PI429285431	10.950812	P	9.956968	P	1.99148415345231	0	lncRNA	48899-2_{3001..3221}	"gi|188536049|ref|NR_023350.1| Homo sapiens coatomer protein complex, subunit beta 2 (beta prime) (COPB2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|188536049|ref|NR_023350.1| Homo sapiens coatomer protein complex, subunit beta 2 (beta prime) (COPB2), transcript variant 2, non-coding RNA"	Chr3	139079433	139079653	-	9276	NR_023350.1	NA	NA	NA	NA	NA	inter
CUST_10825_PI429285431	0.922354	A	0.9131969	A	1.00636740432187	0	lncRNA	12360-1_{1..278}	lnc-CELF4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CELF4-2:1	chr18	 36157464	 36157741	-	lnc-CELF4-2	lnc-CELF4-2:1	XLOC_012820	linc-CELF4-4	NA	NA	NA	inter
CUST_31391_PI429285431	5.340214	P	5.2512555	P	1.06360207729272	0	lncRNA	33168-1_{1..1341}	n337857|AF118068|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|240|NULL|-1.1846200|-0.3368788	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337857|AF118068|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|240|NULL|-1.1846200|-0.3368788	chr1	 35833677	 35835017	-	NA	NA	NA	NA	ZMYM4	NA	chr1:35823677-35845012	inner
CUST_22233_PI429285431	3.9582212	P	3.965603	P	0.994896394020701	0	lncRNA	23833-1_{1..1001}	lnc-HBE1-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HBE1-1:4	chr11	  5526799	  5527799	-	lnc-HBE1-1	lnc-HBE1-1:4	ENSG00000167355.3	AC104389.28	UBQLNL	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-25.30;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90chr11:5535623-5536843"	NA	inner
LNCA_21_P0007209	0.976516	A	1.017426	A	0.97204162520203	0	lncRNA	TCONS_00019298	NA	NA	NA	NA	XLOC_009124	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009124), lincRNA [TCONS_00019298]"	chr11:45767208-45767267	hs|11p11.2	Agilent_HUMAN_G3V2	TCONS_00019298	TCONS_00019298	chr11	 45767208	 45767267	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20031_PI429285431	1.6123323	A	1.7601446	A	0.902618153808239	0	lncRNA	21684-1_{1..1994}	lnc-RABGAP1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-RABGAP1-1:2	chr9	125702376	125704369	+	lnc-RABGAP1-1	lnc-RABGAP1-1:2	ENSG00000261094.1	RP11-355O1.11	RABGAP1	"hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-65.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.10chr9:125703288-125712605"	NA	inter
LNCA_21_P0010381	7.0995617	P	7.317749	P	0.859644874341233	0	lncRNA	ENST00000423712	NA	NA	NA	NA	XLOC_014357	NA	ENST00000423712	NA	NA	"BROAD Institute lincRNA (XLOC_014357), lincRNA [TCONS_00029476]"	chr22:35099241-35099182	hs|22q12.3	Agilent_HUMAN_G3V2	ENST00000423712	ENST00000423712	chr22	 35099182	 35099241	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00803775	5.3983116	P	5.299596	P	1.07081971056108	0	lncRNA	TCONS_00010209	NA	NA	NA	NA	XLOC_004677	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004677), lincRNA [TCONS_00010209]"	chr5:179095247-179095306	hs|5q35.3	Agilent_HUMAN_G3V2	TCONS_00010209	TCONS_00010209	chr5	179095247	179095306	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004700	0.9055889	A	0.9076327	A	0.998584348773262	0	lncRNA	ENST00000434562	NA	NA	NA	NA	XLOC_005526	NA	ENST00000434562	NA	NA	"BROAD Institute lincRNA (XLOC_005526), lincRNA [TCONS_00011405]"	chr6:160323470-160323529	hs|6q25.3	Agilent_HUMAN_G3V2	ENST00000434562	ENST00000434562	chr6	160323470	160323529	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005893	0.9019833	A	0.89961	A	1.0016464000344	0	lncRNA	TCONS_00015148	NA	NA	NA	NA	XLOC_007191	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007191), lincRNA [TCONS_00015148]"	chr8:118753586-118753527	hs|8q24.11	Agilent_HUMAN_G3V2	TCONS_00015148	TCONS_00015148	chr8	118753527	118753586	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012148	5.92461	P	6.4894376	P	0.676036197048859	0	lncRNA	BC036500	NA	BC036500	NA	Hs.159049	LOC100505783	uncharacterized LOC100505783	NA	THC2499238	NA	"BROAD Institute lincRNA (XLOC_l2_008632), lincRNA [TCONS_l2_00016776]"	chr20:42852271-42852330	hs|20q13.12	Agilent_HUMAN_G3V2	BC036500	BC036500	chr20	 42852271	 42852330	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29443_PI429285431	1.1124485	A	1.2156639	A	0.930955814117158	0	lncRNA	31199-1_{1..299}	n332831|AF069509|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000065655|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000065655|3.0424900|-0.0895468	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n332831|AF069509|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000065655|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000065655|3.0424900|-0.0895468	chr13	 72440077	 72440375	-	NA	NA	NA	NA	DACH1	NA	chr13:72430077-72441330	inner
LNCA_21_P0005067	0.9052441	A	1.5108957	A	0.657174497111067	0	lncRNA	TCONS_00012315	NA	NA	NA	NA	XLOC_005866	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005866), lincRNA [TCONS_00012315]"	chr6:146919218-146904453	hs|6q24.3	Agilent_HUMAN_G3V2	TCONS_00012315	TCONS_00012315	chr6	146904453	146919218	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005168	1.7027252	A	0.8872162	A	1.75991896270301	0	lncRNA	TCONS_00012739	NA	NA	NA	NA	XLOC_005737	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005737), lincRNA [TCONS_00012739]"	chr6:45543662-45543603	hs|6p21.1	Agilent_HUMAN_G3V2	TCONS_00012739	TCONS_00012739	chr6	 45543603	 45543662	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002543	4.7980733	P	4.694125	P	1.07471065914673	0	lncRNA	TCONS_00004592	NA	NA	NA	NA	XLOC_002497	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002497), lincRNA [TCONS_00004592]"	chr2:221618627-221614439	hs|2q36.1	Agilent_HUMAN_G3V2	TCONS_00004592	TCONS_00004592	chr2	221614439	221618627	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007456	3.5515268	P	3.4053934	P	1.1065996710231	0	lncRNA	ENST00000526612	NA	NA	NA	NA	XLOC_009349	NA	ENST00000526612	THC2647692	NA	"BROAD Institute lincRNA (XLOC_009349), lincRNA [TCONS_00020033]"	chr11:310329-310270	hs|11p15.5	Agilent_HUMAN_G3V2	ENST00000526612	ENST00000526612	chr11	   310270	   310329	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12804_PI429285431	0.91819006	A	0.9198434	A	0.998854648456838	0	lncRNA	14431-1_{1..901}	lnc-ACACA-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ACACA-1:1	chr17	 35293863	 35294763	-	lnc-ACACA-1	lnc-ACACA-1:1	XLOC_012452	linc-MYO19-1	LHX1	NA	chr17:35294772-35301915	inter
CUST_14821_PI429285431	0.98125356	A	0.9295758	A	1.03646956958197	0	lncRNA	16481-1_{1..553}	lnc-ANLN-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANLN-4:1	chr7	 36880588	 36881140	+	lnc-ANLN-4	lnc-ANLN-4:1	XLOC_006050	linc-GPR141-2	NA	NA	NA	inter
LNCA_21_P0010611	2.730469	A	3.095036	A	0.776701953699142	0	lncRNA	TCONS_l2_00001221	NA	NA	NA	NA	XLOC_l2_000900	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000900), lincRNA [TCONS_l2_00001221]"	chr1:48244055-48243996	hs|1p33	Agilent_HUMAN_G3V2	TCONS_l2_00001221	TCONS_l2_00001221	chr1	 48243996	 48244055	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001083	0.9936558	A	1.0172373	A	0.983787411752064	0	lncRNA	ENST00000417047	NA	NA	NA	NA	XLOC_000653	NA	ENST00000417047	NA	NA	"BROAD Institute lincRNA (XLOC_000653), lincRNA [TCONS_00000435]"	chr1:249158782-249158841	hs|1q44	Agilent_HUMAN_G3V2	ENST00000417047	ENST00000417047	chr1	249158782	249158841	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23800_PI429285431	1.5106287	A	1.2871823	A	1.16751930080879	0	lncRNA	25365-1_{1..1295}	lnc-CRTC3-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-CRTC3-2:2	chr15	 91207586	 91208880	+	lnc-CRTC3-2	lnc-CRTC3-2:2	ENSG00000245479.2	RP11-387D10.3	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-65.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-40.90;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20"	NA	inter
CUST_33853_PI429285431	4.3376126	P	4.8462677	P	0.702877364424402	0	lncRNA	35397-2_{3001..3650}	n340639|BC042835|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3101|NULL|-0.7131400|-0.3101854	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340639|BC042835|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3101|NULL|-0.7131400|-0.3101854	chr5	134898266	134898915	+	NA	NA	NA	NA	CXCL14	NA	chr5:134906369-134908842	inter
LNCA_21_P0005052	0.9301769	A	0.99309504	A	0.957325776303121	0	lncRNA	TCONS_00012260	NA	NA	NA	NA	XLOC_005811	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005811), lincRNA [TCONS_00012260]"	chr6:114192812-114192753	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00012260	TCONS_00012260	chr6	114192753	114192812	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_50128_PI429285431	0.9250697	A	0.9461711	A	0.985480069916158	0	lncRNA	53856-1_{1..1463}	hg19_lincRNAsTranscripts_TCONS_l2_00028969 range=chr9:109213048-109367180 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00028969 range=chr9:109213048-109367180 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr9	109213048	109214510	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004277	0.9239197	A	0.9622897	A	0.97375450309693	0	lncRNA	TCONS_00010038	NA	NA	NA	NA	XLOC_004468	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004468), lincRNA [TCONS_00010038]"	chr5:90620908-90620967	hs|5q14.3	Agilent_HUMAN_G3V2	TCONS_00010038	TCONS_00010038	chr5	 90620908	 90620967	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002470	3.0096335	A	3.2014241	P	0.875518397607392	0	lncRNA	TCONS_00004325	NA	NA	NA	NA	XLOC_002194	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002194), lincRNA [TCONS_00004325]"	chr2:86224732-86224673	hs|2p11.2	Agilent_HUMAN_G3V2	TCONS_00004325	TCONS_00004325	chr2	 86224673	 86224732	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32219_PI429285431	0.9145185	A	0.9209753	A	0.995534487467383	0	lncRNA	33912-1_{1..1365}	n338793|AF339815|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1216|NULL|-1.1298500|-0.3690722	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338793|AF339815|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1216|NULL|-1.1298500|-0.3690722	chr13	 88260160	 88261524	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_7900_PI429285431	0.9122182	A	0.91074723	A	1.00102011867566	0	lncRNA	9515-1_{1..572}	lnc-ZNF572-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF572-1:2	chr8	125956809	125957380	+	lnc-ZNF572-1	lnc-ZNF572-1:2	ENSG00000249816	ENSG00000249816.2	NA	NA	NA	inter
LNCA_21_P0007083	2.4847858	A	2.1431966	A	1.26715165573639	0	lncRNA	TCONS_00018839	NA	NA	NA	NA	XLOC_008644	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008644), lincRNA [TCONS_00018839]"	chr10:122584743-122584802	hs|10q26.12	Agilent_HUMAN_G3V2	TCONS_00018839	TCONS_00018839	chr10	122584743	122584802	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012310	4.149298	P	4.658345	P	0.702686457669031	0	lncRNA	ENST00000440005	XR_109700	XR_109700	NA	NA	XLOC_l2_009292	NA	ENST00000440005	THC2531065	NA	"PREDICTED: Homo sapiens hypothetical LOC100506454 (LOC100506454), miscRNA [XR_109700]"	chr22:19018683-19018742	hs|22q11.21	Agilent_HUMAN_G3V2	ENST00000440005	ENST00000440005	chr22	 19018683	 19018742	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014859	1.0960704	A	0.91381526	A	1.13465613064405	0	lncRNA	XR_132746	XR_132746	XR_132746	NA	NA	LOC100652728	uncharacterized LOC100652728	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652728 (LOC100652728), miscRNA [XR_132746]"	chr6:144282303-144282362	hs|6q24.2	Agilent_HUMAN_G3V2	XR_132746	XR_132746	chr6	144282303	144282362	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4587_PI429285431	0.91334206	A	0.9154841	A	0.998516352707816	0	lncRNA	4536-1_{1..355}	"transcript_id ""ENST00000437698.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437698.1"" | genecode_v17"	chr13	 34085467	 34085821	-	ENSG00000230490.2	ENST00000437698.1	RP11-141M1.3	RP11-141M1.3-003	NA	NA	NA	inner
LNCA_21_P0006678	1.3936825	A	1.8729877	A	0.717323002631907	0	lncRNA	XR_110548	XR_110548	XR_110548	NA	NA	LOC100506853	uncharacterized LOC100506853	ENST00000446107	THC2675641	NA	"PREDICTED: Homo sapiens hypothetical LOC100506853 (LOC100506853), miscRNA [XR_110548]"	chr10:44409625-44409684	hs|10q11.21	Agilent_HUMAN_G3V2	XR_110548	XR_110548	chr10	 44409625	 44409684	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012624	0.90081936	A	0.89043915	A	1.00722095959394	0	lncRNA	TCONS_l2_00020810	NA	NA	NA	NA	XLOC_l2_010880	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010880), lincRNA [TCONS_l2_00020810]"	chr4:148499563-148499622	hs|4q31.22	Agilent_HUMAN_G3V2	TCONS_l2_00020810	TCONS_l2_00020810	chr4	148499563	148499622	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43141_PI429285431	6.283906	P	6.232543	P	1.03624346249319	0	lncRNA	47955-1_{1..761}	ENST00000593108 proj_havana:sense_intronic chromosome:GRCh37:HG185_PATCH:40196965:40199369:-1 gene:ENSG00000267718 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000593108 proj_havana:sense_intronic chromosome:GRCh37:HG185_PATCH:40196965:40199369:-1 gene:ENSG00000267718 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chrHG185_PATCH	 40196965	 40197725	-	ENSG00000267718	ENST00000593108	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001074	0.90099245	A	0.8897279	A	1.00783855292551	0	lncRNA	ENST00000451867	NA	NA	NA	NA	XLOC_000615	NA	ENST00000451867	NA	NA	"BROAD Institute lincRNA (XLOC_000615), lincRNA [TCONS_00000418]"	chr1:232448795-232448854	hs|1q42.2	Agilent_HUMAN_G3V2	ENST00000451867	ENST00000451867	chr1	232448795	232448854	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20794_PI429285431	1.3874959	A	0.920983	A	1.38176559949093	0	lncRNA	22427-1_{1..3000}	lnc-WDR73-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-WDR73-4:2	chr15	 84962536	 84965535	-	lnc-WDR73-4	lnc-WDR73-4:2	ENSG00000235370.3	CSPG4P5	NA	NA	NA	inter
CUST_38428_PI429285431	0.90860647	A	0.8917385	A	1.01176060428162	0	lncRNA	39455-1_{1..2585}	n382518|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zyj.2||-0.4446100|-0.4186703	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n382518|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001zyj.2||-0.4446100|-0.4186703	chr15	 50647749	 50650333	+	NA	NA	NA	NA	GABPB1	"hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.50;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-23.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70chr15:50637749-50647605"	NA	inter
LNCA_21_P0004841	0.9127498	A	2.319667	A	0.37711666225124	0	lncRNA	TCONS_00011700	NA	NA	NA	NA	XLOC_005181	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005181), lincRNA [TCONS_00011700]"	chr6:14498377-14509093	hs|6p23	Agilent_HUMAN_G3V2	TCONS_00011700	TCONS_00011700	chr6	 14498377	 14509093	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15711_PI429285431	2.6525538	A	2.4372818	A	1.16092276952575	0	lncRNA	17399-1_{1..203}	lnc-ARRDC4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARRDC4-4:1	chr15	 98115736	 98115938	+	lnc-ARRDC4-4	lnc-ARRDC4-4:1	XLOC_011375	linc-ARRDC4-1	NA	NA	NA	inter
CUST_37321_PI429285431	3.1085937	P	3.6860003	P	0.670167393453572	0	lncRNA	38428-1_{1..3000}	n345765|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1314|NULL|-1.2734600|-0.1767863	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345765|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1314|NULL|-1.2734600|-0.1767863	chr14	 21123296	 21126295	-	NA	NA	NA	NA	NA	"hg19_refFlat_SYCP2L:range=chr6:10887360-109640395'pad=0,hg19_refFlat_SYCP2L:range=chr6:10887360-109640395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60"	NA	inter
LNCA_21_P0005801	5.457427	P	5.2804327	P	1.13052610047619	0	lncRNA	THC2681733	NA	NA	NA	NA	XLOC_007011	NA	NA	THC2681733	NA	"BROAD Institute lincRNA (XLOC_007011), lincRNA [TCONS_00014937]"	chr8:013690736-013690679	hs|8p22	Agilent_HUMAN_G3V2	THC2681733	THC2681733	chr8	 13690679	 13690736	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16012_PI429285431	1.5174334	A	1.3091308	A	1.15532808497555	0	lncRNA	17708-1_{1..366}	lnc-CDK5RAP1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CDK5RAP1-1:1	chr20	 31804726	 31805091	-	lnc-CDK5RAP1-1	lnc-CDK5RAP1-1:1	XLOC_013723	linc-SUN5-1	C20orf71	NA	chr20:31805135-31814873	inter
LNCA_21_P0010092	6.5612497	P	6.5180063	P	1.03042778451283	0	lncRNA	TCONS_00028559	NA	NA	NA	NA	XLOC_013547	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013547), lincRNA [TCONS_00028559]"	chr20:46692018-46692077	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028559	TCONS_00028559	chr20	 46692018	 46692077	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001307	0.9292366	A	0.98941475	A	0.959145672704763	0	lncRNA	TCONS_00000959	NA	NA	NA	NA	XLOC_000218	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000218), lincRNA [TCONS_00000959]"	chr1:59181335-59181394	hs|1p32.1	Agilent_HUMAN_G3V2	TCONS_00000959	TCONS_00000959	chr1	 59181335	 59181394	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005055	0.92563087	A	0.9726548	A	0.967930971677911	0	lncRNA	TCONS_00012264	NA	NA	NA	NA	XLOC_005820	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005820), lincRNA [TCONS_00012264]"	chr6:122426454-122426395	hs|6q22.31	Agilent_HUMAN_G3V2	TCONS_00012264	TCONS_00012264	chr6	122426395	122426454	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003647	0.9195209	A	0.94742984	A	0.980840910734022	0	lncRNA	TCONS_00008216	NA	NA	NA	NA	XLOC_003678	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003678), lincRNA [TCONS_00008216]"	chr4:124247207-124247266	hs|4q28.1	Agilent_HUMAN_G3V2	TCONS_00008216	TCONS_00008216	chr4	124247207	124247266	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_105_PI429285431	0.9152184	A	0.90832746	A	1.00478786098466	0	lncRNA	97-1_{1..735}	"transcript_id ""ENST00000455464.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455464.2"" | genecode_v17"	chr1	   322078	   322812	+	ENSG00000237094.6	ENST00000455464.2	RP4-669L17.10	RP4-669L17.10-009	LOC100288646	NA	chr1:327463-342507	inter
CUST_9254_PI429285431	0.9108068	A	0.9009868	A	1.00682992358178	0	lncRNA	10763-1_{1..606}	lnc-SOX2-1:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SOX2-1:10	chr3	181457357	181457962	+	lnc-SOX2-1	lnc-SOX2-1:10	ENSG00000242808	RP11-4B14.2	NA	NA	NA	inter
LNCA_21_P0003887	5.245252	P	5.477789	P	0.85113683859541	0	lncRNA	TCONS_00009018	NA	NA	NA	NA	XLOC_003863	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003863), lincRNA [TCONS_00009018]"	chr4:4577791-4570645	hs|4p16.2	Agilent_HUMAN_G3V2	TCONS_00009018	TCONS_00009018	chr4	  4570645	  4577791	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3627_PI429285431	0.91944706	A	0.9054748	A	1.00973188238355	0	lncRNA	3597-1_{1..458}	"transcript_id ""ENST00000417542.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000417542.1"" | genecode_v17"	chr10	 16320700	 16321157	+	ENSG00000226140.1	ENST00000417542.1	RP11-461K13.1	RP11-461K13.1-001	NA	NA	NA	inter
LNCA_21_P0003146	0.9011844	A	0.8957299	A	1.00378792742789	0	lncRNA	TCONS_00006578	NA	NA	NA	NA	XLOC_003200	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003200), lincRNA [TCONS_00006578]"	chr3:106404472-106404413	hs|3q13.12	Agilent_HUMAN_G3V2	TCONS_00006578	TCONS_00006578	chr3	106404413	106404472	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004844	2.3857157	A	3.2377055	P	0.554020090896749	0	lncRNA	TCONS_00011703	NA	NA	NA	NA	XLOC_005182	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005182), lincRNA [TCONS_00011703]"	chr6:14514550-14514609	hs|6p23	Agilent_HUMAN_G3V2	TCONS_00011703	TCONS_00011703	chr6	 14514550	 14514609	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30589_PI429285431	0.92708945	A	0.93424076	A	0.995055354842157	0	lncRNA	32371-1_{1..223}	n335876|X61019|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322428|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322428|0.3161950|-0.2152795	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335876|X61019|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000322428|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000322428|0.3161950|-0.2152795	chr14	106329408	106329630	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_982_PI429285431	2.7135816	A	3.2062979	A	0.710685761259864	0	lncRNA	971-1_{1..580}	"transcript_id ""ENST00000455716.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455716.1"" | genecode_v17"	chr2	104473428	104474007	-	ENSG00000232597.1	ENST00000455716.1	AC013727.1	AC013727.1-001	NA	NA	NA	inter
CUST_16337_PI429285431	3.5019698	P	2.8510313	A	1.57018930102481	0	lncRNA	18038-1_{1..672}	lnc-IL4R-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IL4R-2:3	chr16	 27292857	 27293528	+	lnc-IL4R-2	lnc-IL4R-2:3	XLOC_011680	linc-IL4R-2	NA	NA	NA	inter
LNCA_21_P0014630	0.9009391	A	0.8907864	A	1.00706213547206	0	lncRNA	XR_110825	XR_110825	XR_110825	NA	NA	LOC100505794	uncharacterized LOC100505794	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505794, transcript variant 2 (LOC100505794), miscRNA [XR_110825]"	chr1:146681581-146681640	hs|1q21.1	Agilent_HUMAN_G3V2	XR_110825	XR_110825	chr1	146681581	146681640	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46953_PI429285431	7.840348	P	8.426205	P	0.666253448346215	0	lncRNA	51058-2_{3001..3877}	"gi|289547539|ref|NR_033338.1| Homo sapiens chromosome 17 open reading frame 70 (C17orf70), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|289547539|ref|NR_033338.1| Homo sapiens chromosome 17 open reading frame 70 (C17orf70), transcript variant 1, non-coding RNA"	Chr17	 79509911	 79510787	-	80233	NR_033338.1	NA	NA	NA	NA	NA	inter
CUST_51818_PI429285431	0.9182895	A	0.90134656	A	1.01181318203451	0	lncRNA	55371-1_{1..1088}	hg19_lincRNAsTranscripts_TCONS_l2_00013006 range=chr19:28950285-28952213 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013006 range=chr19:28950285-28952213 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr19	 28950285	 28951372	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_15861_PI429285431	2.4839268	A	2.690239	A	0.866749978046856	0	lncRNA	17551-1_{1..3000}	lnc-C6orf70-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C6orf70-5:1	chr6	170364719	170367718	+	lnc-C6orf70-5	lnc-C6orf70-5:1	XLOC_005559	linc-FAM120B-6	NA	NA	NA	inter
CUST_22592_PI429285431	6.035096	P	5.800174	P	1.17684310891107	0	lncRNA	24176-1_{1..356}	lnc-SENP5-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SENP5-2:1	chr3	196731365	196731720	+	lnc-SENP5-2	lnc-SENP5-2:1	ENSG00000228109.1	MFI2-AS1	MFI2	NA	chr3:196721365-196741607	inner
LNCA_21_P0002662	0.91104245	A	0.88984483	A	1.01480154431833	0	lncRNA	TCONS_00005162	NA	NA	NA	NA	XLOC_002120	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002120), lincRNA [TCONS_00005162]"	chr2:64027455-64027396	hs|2p15	Agilent_HUMAN_G3V2	TCONS_00005162	TCONS_00005162	chr2	 64027396	 64027455	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37546_PI429285431	0.9120143	A	0.9036569	A	1.0058097195863	0	lncRNA	38651-2_{3001..6000}	n346023|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1573|NULL|-1.3231500|-0.1156631	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n346023|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1573|NULL|-1.3231500|-0.1156631	chr21	 44867599	 44870598	+	NA	NA	NA	NA	NA	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
LNCA_21_P0007907	4.946927	P	6.238528	P	0.40849745632894	0	lncRNA	XR_110105	XR_110105	XR_110105	NA	NA	LOC100506622	uncharacterized LOC100506622	NA	THC2609189	NA	"PREDICTED: Homo sapiens hypothetical LOC100506622 (LOC100506622), miscRNA [XR_110105]"	chr13:22850538-22850597	hs|13q12.11	Agilent_HUMAN_G3V2	XR_110105	XR_110105	chr13	 22850538	 22850597	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014779	0.91253173	A	0.8943237	A	1.01270082363122	0	lncRNA	ENST00000494753	XR_132558	XR_132558	NA	NA	PLIN2	perilipin 2	ENST00000494753	THC2611323	GO:0005811|GO:0014070|GO:0005737|GO:0005886|GO:0019915|GO:0005783|GO:0042493|GO:0005634|GO:0005576|GO:0015909|GO:0044255	"PREDICTED: Homo sapiens hypothetical LOC100509484 (LOC100509484), miscRNA [XR_132558]"	chr9:19129797-19129738	hs|9p22.1	Agilent_HUMAN_G3V2	ENST00000494753	ENST00000494753	chr9	 19129738	 19129797	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51409_PI429285431	1.216987	A	1.133579	A	1.05951792827955	0	lncRNA	54988-3_{6001..6952}	hg19_lincRNAsTranscripts_TCONS_l2_00009916 range=chr16:75602-87928 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00009916 range=chr16:75602-87928 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr16	    81602	    82553	-	NA	NA	NA	NA	POLR3K	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-47.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-62.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-40.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0,hg19_refFlat_AGBL2:range=chr11:47681725-477362025'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-73.50;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-34.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-49.80;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.90chr16:96979-97928"	NA	inter
CUST_4393_PI429285431	0.924642	A	0.9251088	A	0.999676491236363	0	lncRNA	4344-1_{1..1034}	"transcript_id ""ENST00000550307.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000550307.1"" | genecode_v17"	chr12	102348776	102349809	-	ENSG00000258308.1	ENST00000550307.1	RP11-554E23.2	RP11-554E23.2-002	NA	NA	NA	inter
LNCA_21_P0003821	0.9618131	A	1.1982388	A	0.848845738239232	0	lncRNA	TCONS_00008716	NA	NA	NA	NA	XLOC_004229	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004229), lincRNA [TCONS_00008716]"	chr4:190200310-190200251	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008716	TCONS_00008716	chr4	190200251	190200310	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26340_PI429285431	1.5664392	A	1.7985857	A	0.851367250367766	0	lncRNA	27847-1_{1..465}	lnc-ADAL-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ADAL-1:1	chr15	 43594628	 43595092	+	lnc-ADAL-1	lnc-ADAL-1:1	ENSG00000260406.1	RP11-402F9.3	TGM7	NA	chr15:43584628-43594453	inter
CUST_48632_PI429285431	2.4533002	A	2.310554	A	1.1040046127543	0	lncRNA	52479-1_{1..270}	hg19_lincRNAsTranscripts_TCONS_l2_00013765 range=chr2:89086124-89096838 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00013765 range=chr2:89086124-89096838 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	 89086124	 89086393	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3292495	5.811607	P	5.5916023	P	1.1647373809341	0	lncRNA	ENST00000501075	XR_109126	XR_109126	NA	Hs.617756	NA	NA	ENST00000501075	THC2519415	NA	"PREDICTED: Homo sapiens hypothetical LOC100127974 (LOC100127974), miscRNA [XR_109126]"	chr12:6692199-6692258	hs|12p13.31	Agilent_HUMAN_G3V2	ENST00000501075	ENST00000501075	chr12	  6692199	  6692258	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17438_PI429285431	0.9169188	A	0.908848	A	1.00560992931422	0	lncRNA	19162-1_{1..243}	lnc-ARAP2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARAP2-4:1	chr4	 34848350	 34848592	-	lnc-ARAP2-4	lnc-ARAP2-4:1	XLOC_003922	linc-CCKAR-3	NA	NA	NA	inter
LNCA_21_P0001661	2.2047534	A	1.5319047	A	1.59421775364688	0	lncRNA	TCONS_00001929	NA	NA	NA	NA	XLOC_000036	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000036), lincRNA [TCONS_00001929]"	chr1:5062115-5062426	hs|1p36.32	Agilent_HUMAN_G3V2	TCONS_00001929	TCONS_00001929	chr1	  5062115	  5062426	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_965_PI429285431	3.552199	P	2.8408654	A	1.63731692258866	0	lncRNA	954-1_{1..622}	"transcript_id ""ENST00000604397.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000604397.1"" | genecode_v17"	chr2	 98088576	 98089197	-	ENSG00000230606.5	ENST00000604397.1	AC159540.1	AC159540.1-014	NA	NA	NA	inter
LNCA_21_P0003223	8.076875	P	9.055333	P	0.507521906238238	0	lncRNA	XR_110041	XR_110041	XR_110041	NA	Hs.543238	LOC100505786	uncharacterized LOC100505786	NA	THC2669942	NA	"PREDICTED: Homo sapiens hypothetical LOC100505786 (LOC100505786), miscRNA [XR_110041]"	chr3:17784551-17784610	hs|3p24.3	Agilent_HUMAN_G3V2	XR_110041	XR_110041	chr3	 17784551	 17784610	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005783	0.9034775	A	0.8874935	A	1.01114086687806	0	lncRNA	TCONS_00014900	NA	NA	NA	NA	XLOC_006972	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006972), lincRNA [TCONS_00014900]"	chr8:1237183-1237124	hs|8p23.3	Agilent_HUMAN_G3V2	TCONS_00014900	TCONS_00014900	chr8	  1237124	  1237183	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004269	2.9052985	A	3.1789489	P	0.827223800548131	0	lncRNA	TCONS_00010005	NA	NA	NA	NA	XLOC_004441	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004441), lincRNA [TCONS_00010005]"	chr5:79138561-79138620	hs|5q14.1	Agilent_HUMAN_G3V2	TCONS_00010005	TCONS_00010005	chr5	 79138561	 79138620	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014275	0.90754485	A	0.88772213	A	1.01383489095614	0	lncRNA	ENST00000531962	XR_109075	XR_109075	NA	NA	LOC100506675	NA	ENST00000531962	THC2666086	NA	"PREDICTED: Homo sapiens hypothetical LOC100506675, transcript variant 1 (LOC100506675), miscRNA [XR_109075]"	chr11:32057589-32057530	hs|11p13	Agilent_HUMAN_G3V2	ENST00000531962	ENST00000531962	chr11	 32057530	 32057589	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8103_PI429285431	1.1838073	A	0.8908452	A	1.22515314636799	0	lncRNA	9708-1_{1..2211}	lnc-CLDN16-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CLDN16-1:1	chr3	190039080	190041290	+	lnc-CLDN16-1	lnc-CLDN16-1:1	ENSG00000247017	ENST00000499321	CLDN1	"hg19_refFlat_CLDN1:range=chr3:190026066-1900399955'pad=0,hg19_refFlat_CLDN1:range=chr3:190026066-1900399955'pad=0 3'pad=0 strand=- repeatMasking=none,-96.40chr3:190029080-190040235"	NA	inner
CUST_48880_PI429285431	6.7091	P	6.9223657	P	0.862582468784816	0	lncRNA	52717-1_{1..481}	hg19_lincRNAsTranscripts_TCONS_l2_00019354 range=chr3:72228141-72263914 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00019354 range=chr3:72228141-72263914 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr3	 72228141	 72228621	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003339	0.9133443	A	0.89319646	A	1.01406339048924	0	lncRNA	ENST00000514401	NA	NA	NA	NA	XLOC_003466	NA	ENST00000514401	THC2637715	NA	"BROAD Institute lincRNA (XLOC_003466), lincRNA [TCONS_00007484]"	chr4:14395554-14395613	hs|4p15.33	Agilent_HUMAN_G3V2	ENST00000514401	ENST00000514401	chr4	 14395554	 14395613	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12224_PI429285431	0.9182234	A	0.8998148	A	1.01284162367436	0	lncRNA	13828-1_{1..268}	lnc-FAM135A-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM135A-1:3	chr6	 71108918	 71109185	+	lnc-FAM135A-1	lnc-FAM135A-1:3	XLOC_005341	linc-FAM135A	NA	NA	NA	inter
CUST_43601_PI429285431	1.7190104	A	3.023203	A	0.404947672633501	0	lncRNA	48364-1_{1..1171}	"gi|374088103|ref|NR_046138.1| Homo sapiens family with sequence similarity 91, member A2 (FAM91A2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|374088103|ref|NR_046138.1| Homo sapiens family with sequence similarity 91, member A2 (FAM91A2), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NR_046138.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001317	6.7891645	P	7.0992517	P	0.806593005304134	0	lncRNA	TCONS_00000976	NA	NA	NA	NA	XLOC_000247	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000247), lincRNA [TCONS_00000976]"	chr1:71304682-71304741	hs|1p31.1	Agilent_HUMAN_G3V2	TCONS_00000976	TCONS_00000976	chr1	 71304682	 71304741	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_183_PI429201921	1.7301403	A	2.6803467	A	0.517558411830433	0	lncRNA	150-2_{3001..4708}	TC03002804.hg.1	TCONS_00005392-XLOC_003045 // Rinn lincRNAs // linc-ATP2B2-2 chr3:-:10801168-10805877 // chr3 // 100 // 100 // 0 // --- // 0 /// TCONS_00005741-XLOC_003045 // Rinn lincRNAs // linc-ATP2B2-2 chr3:-:10803390-10805866 // chr3 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr3:-:10801168-10805877	NA	Affy_HUMAN_HTA2.0	TCONS_00005392-XLOC_003045	linc-ATP2B2-2	chr3	 10801168	 10805877	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008984	0.9525546	A	1.0074166	A	0.962686523813787	0	lncRNA	TCONS_00024489	NA	NA	NA	NA	XLOC_011809	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011809), lincRNA [TCONS_00024489]"	chr16:85984170-85984229	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024489	TCONS_00024489	chr16	 85984170	 85984229	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004453	4.7640796	P	5.047524	P	0.821627058742501	0	lncRNA	TCONS_00010520	NA	NA	NA	NA	XLOC_005040	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005040), lincRNA [TCONS_00010520]"	chr5:144775587-144769380	hs|5q32	Agilent_HUMAN_G3V2	TCONS_00010520	TCONS_00010520	chr5	144769380	144775587	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1274_PI429285431	3.360332	A	3.551937	P	0.875631038645765	0	lncRNA	1266-1_{1..592}	"transcript_id ""ENST00000441444.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000441444.1"" | genecode_v17"	chr2	239697289	239697880	-	ENSG00000226992.1	ENST00000441444.1	AC144525.1	AC144525.1-001	NA	NA	NA	inter
LNCA_21_P0014620	0.90933895	A	1.7374532	A	0.563265006363158	0	lncRNA	XR_110586	XR_110586	XR_110586	NA	Hs.690392	LOC100507418	uncharacterized LOC100507418	NA	THC2612534	NA	"PREDICTED: Homo sapiens hypothetical LOC100507418 (LOC100507418), miscRNA [XR_110586]"	chr8:146065942-146065883	hs|8q24.3	Agilent_HUMAN_G3V2	XR_110586	XR_110586	chr8	146065883	146065942	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17535_PI429285431	0.92500055	A	0.92931956	A	0.997010767075879	0	lncRNA	19260-1_{1..211}	lnc-CLDN24-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CLDN24-3:1	chr4	184393744	184393954	-	lnc-CLDN24-3	lnc-CLDN24-3:1	XLOC_004199	linc-CLDN24-2	NA	NA	NA	inter
CUST_20473_PI429285431	0.9166811	A	0.8995549	A	1.01194171693336	0	lncRNA	22116-1_{1..578}	lnc-ART5-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ART5-1:2	chr11	  3593165	  3593742	-	lnc-ART5-1	lnc-ART5-1:2	ENSG00000255367.1	RP13-726E6.2	NA	NA	NA	inter
CUST_7459_PI429285431	0.9220524	A	1.2157012	A	0.815836070826513	0	lncRNA	9102-1_{1..692}	lnc-SDCBP-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SDCBP-2:1	chr8	 60032145	 60032836	+	lnc-SDCBP-2	lnc-SDCBP-2:1	ENSG00000167912	RP11-25K19.1	TOX	NA	chr8:60022145-60031767	inter
CUST_48469_PI429285431	7.4252224	P	6.674993	P	1.68206027022193	0	lncRNA	52321-1_{1..582}	hg19_lincRNAsTranscripts_TCONS_l2_00001806 range=chr1:224140177-224142367 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00001806 range=chr1:224140177-224142367 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr1	224140177	224140758	-	NA	NA	NA	NA	LOC441124	NA	chr1:224133977-224141141	inter
CUST_7016_PI429285431	1.7208872	A	2.929518	A	0.432679057997015	0	lncRNA	6963-1_{1..517}	"transcript_id ""ENST00000438499.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438499.1"" | genecode_v17"	chrX	  6585906	  6586422	-	ENSG00000231217.1	ENST00000438499.1	RP11-1M18.1	RP11-1M18.1-001	NA	NA	NA	inter
CUST_48318_PI429285431	1.4919474	A	1.3607202	A	1.09522493656486	0	lncRNA	52176-1_{1..583}	hg19_lincRNAsTranscripts_TCONS_l2_00000172 range=chr1:26553802-26554622 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000172 range=chr1:26553802-26554622 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	 26553802	 26554384	+	NA	NA	NA	NA	CEP85	"hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10chr1:26545577-26564622"	NA	inter
LNCA_21_P0006331	2.024622	A	3.0195568	P	0.50175854981493	0	lncRNA	TCONS_00016498	NA	NA	NA	NA	XLOC_007879	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007879), lincRNA [TCONS_00016498]"	chr9:135903577-135903518	hs|9q34.2	Agilent_HUMAN_G3V2	TCONS_00016498	TCONS_00016498	chr9	135903518	135903577	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29627_PI429285431	0.9237405	A	0.9672363	A	0.970300956536459	0	lncRNA	31388-1_{1..544}	n333188|AF436089|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079647_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079647_05|-1.2558900|-0.1387512	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333188|AF436089|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079647_05|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079647_05|-1.2558900|-0.1387512	chr6	  1311715	  1312258	+	NA	NA	NA	NA	FOXQ1	NA	chr6:1312675-1314993	inter
CUST_31001_PI429285431	4.682568	P	5.4472365	P	0.588588597954166	0	lncRNA	32789-1_{1..649}	n337164|AF399634|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000384033|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000384033|4.6435600|-0.0934777	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337164|AF399634|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000384033|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000384033|4.6435600|-0.0934777	chr11	  7960217	  7960865	-	NA	NA	NA	NA	OR10A3	NA	chr11:7960123-7961067	inner
CUST_35602_PI429285431	1.2663317	A	2.022426	A	0.592097102957685	0	lncRNA	37015-2_{3001..3963}	n342739|AF086604|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5242|NULL|11.0086000|-0.0205524	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342739|AF086604|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|5242|NULL|11.0086000|-0.0205524	chr11	  1247353	  1248315	+	NA	NA	NA	NA	MUC5B	NA	chr11:1244295-1271606	inner
LNCA_21_P0013798	2.4793105	A	3.1006913	P	0.65004847004404	0	lncRNA	TCONS_l2_00030390	NA	NA	NA	NA	XLOC_l2_015641	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015641), lincRNA [TCONS_l2_00030390]"	chrX:149116483-149116542	hs|Xq28	Agilent_HUMAN_G3V2	TCONS_l2_00030390	TCONS_l2_00030390	chrX	149116483	149116542	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009483	0.966566	A	1.014167	A	0.967543882089566	0	lncRNA	THC2711140	NA	NA	NA	NA	XLOC_012684	NA	NA	THC2711140	NA	"BROAD Institute lincRNA (XLOC_012684), lincRNA [TCONS_00026337]"	NA	NA	Agilent_HUMAN_G3V2	THC2711140	THC2711140	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012609	2.593118	A	1.3890362	A	2.30390591116898	0	lncRNA	TCONS_l2_00020754	NA	NA	NA	NA	XLOC_l2_010830	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010830), lincRNA [TCONS_l2_00020754]"	chr4:127485375-127485434	hs|4q28.1	Agilent_HUMAN_G3V2	TCONS_l2_00020754	TCONS_l2_00020754	chr4	127485375	127485434	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014523	4.3983793	P	4.428065	P	0.97963369357483	0	lncRNA	XR_110205	XR_110205	XR_110205	NA	NA	LOC100506148	uncharacterized LOC100506148	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506148 (LOC100506148), miscRNA [XR_110205]"	chr6:105845771-105850745	hs|6q21	Agilent_HUMAN_G3V2	XR_110205	XR_110205	chr6	105845771	105850745	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006906	0.91603595	A	0.92495924	A	0.993833935380126	0	lncRNA	TCONS_00018323	NA	NA	NA	NA	XLOC_008604	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008604), lincRNA [TCONS_00018323]"	chr10:108071160-108071219	hs|10q25.1	Agilent_HUMAN_G3V2	TCONS_00018323	TCONS_00018323	chr10	108071160	108071219	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008413	0.91399306	A	3.0909536	P	0.221141157311935	0	lncRNA	TCONS_00022690	NA	NA	NA	NA	XLOC_010981	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010981), lincRNA [TCONS_00022690]"	chr14:27307562-27300749	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022690	TCONS_00022690	chr14	 27300749	 27307562	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43538_PI429285431	0.9246907	A	0.95626295	A	0.978353506106063	0	lncRNA	48321-1_{1..476}	"gi|388490271|ref|NR_049777.1| Homo sapiens spermatogenesis-related protein 7 (SRG7), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,ncbi,"	">gi|388490271|ref|NR_049777.1| Homo sapiens spermatogenesis-related protein 7 (SRG7), transcript variant 2, non-coding RNA"	Chr1	109399839	109400314	+	642864	NR_049777.1	NA	NA	NA	NA	NA	inter
CUST_7257_PI429285431	0.9137422	A	0.90897256	A	1.00331153357053	0	lncRNA	8022-1_{1..267}	"transcript_id ""ENST00000411156.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411156.1"" | genecode_v17"	chr9	 24905467	 24905733	+	ENSG00000223088.1	ENST00000411156.1	RMRPP5	RMRPP5-201	NA	NA	NA	inter
CUST_39296_PI429285431	3.0618422	P	3.957747	P	0.537410047663226	0	lncRNA	40265-1_{1..1381}	n386303|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gqr.1||3.2133500|-0.4345914	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n386303|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010gqr.1||3.2133500|-0.4345914	chr22	 17308363	 17309743	+	NA	NA	NA	NA	XKR3	NA	chr22:17298363-17302584	inter
LNCA_21_P0012156	1.597909	A	0.8875525	A	1.63620838566097	0	lncRNA	TCONS_l2_00016817	NA	NA	NA	NA	XLOC_l2_008692	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008692), lincRNA [TCONS_l2_00016817]"	chr20:58859610-58859669	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_l2_00016817	TCONS_l2_00016817	chr20	 58859610	 58859669	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011609	5.9778614	P	5.9696608	P	1.0057004086166	0	lncRNA	TCONS_l2_00011464	NA	NA	NA	NA	XLOC_l2_006196	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006196), lincRNA [TCONS_l2_00011464]"	chr17:72556762-72556703	hs|17q25.1	Agilent_HUMAN_G3V2	TCONS_l2_00011464	TCONS_l2_00011464	chr17	 72556703	 72556762	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1548_PI429285431	7.510911	P	7.6171355	P	0.929016097374801	0	lncRNA	1535-1_{1..538}	"transcript_id ""ENST00000494887.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000494887.1"" | genecode_v17"	chr3	167621115	167621652	+	ENSG00000244227.1	ENST00000494887.1	RP11-298O21.5	RP11-298O21.5-004	NA	NA	NA	inter
CUST_33976_PI429285431	9.815595	P	9.608119	P	1.15466632303997	0	lncRNA	35513-1_{1..1460}	n340787|AK026101|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3250|NULL|-1.0922300|-0.1616435	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340787|AK026101|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3250|NULL|-1.0922300|-0.1616435	chr5	180256955	180258414	-	NA	NA	NA	NA	NA	"hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10"	NA	inter
CUST_49401_PI429285431	0.9316799	A	0.92515355	A	1.00453396857456	0	lncRNA	53211-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00022644 range=chr5:175545619-175554278 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022644 range=chr5:175545619-175554278 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr5	175545619	175548618	+	NA	NA	NA	NA	FAM153B	"hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0,hg19_refFlat_KIAA0586:range=chr14:58896137-590146505'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0,hg19_refFlat_KIAA0586:range=chr14:58894347-590146945'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0,hg19_refFlat_PDHA1:range=chrX:19362156-193777715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0,hg19_refFlat_TTC22:range=chr1:55251219-552668365'pad=0 3'pad=0 strand=- repeatMasking=none,-61.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00chr5:175535619-175543458"	NA	inter
CUST_26219_PI429285431	2.2490525	A	1.0189458	A	2.34584338781987	0	lncRNA	27727-2_{3001..6000}	lnc-GJA10-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GJA10-3:6	chr6	 90586525	 90589524	+	lnc-GJA10-3	lnc-GJA10-3:6	ENSG00000118412.8	CASP8AP2	CASP8AP2	NA	chr6:90573525-90584155	inner
CUST_43670_PI429285431	6.035633	P	6.479987	P	0.734913317373477	0	lncRNA	48425-1_{1..1294}	"gi|310118775|ref|XR_108312.1| PREDICTED: Homo sapiens uncharacterized LOC100506128, transcript variant 2 (LOC100506128), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310118775|ref|XR_108312.1| PREDICTED: Homo sapiens uncharacterized LOC100506128, transcript variant 2 (LOC100506128), misc_RNA"	NA	NA	NA	NA	NA	XR_108312.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011371	0.91314816	A	0.9200499	A	0.995227503105491	0	lncRNA	TCONS_l2_00009029	NA	NA	NA	NA	XLOC_l2_004887	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004887), lincRNA [TCONS_l2_00009029]"	chr15:38516423-38516364	hs|15q14	Agilent_HUMAN_G3V2	TCONS_l2_00009029	TCONS_l2_00009029	chr15	 38516364	 38516423	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43186_PI429285431	3.6990967	P	3.196316	P	1.41694199478516	0	lncRNA	48000-1_{1..259}	ENST00000588517 havana:sense_intronic chromosome:GRCh37:18:43063335:43065281:1 gene:ENSG00000266988 gene_biotype:sense_intronic transcript_biotype:sense_intronic	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000588517 havana:sense_intronic chromosome:GRCh37:18:43063335:43065281:1 gene:ENSG00000266988 gene_biotype:sense_intronic transcript_biotype:sense_intronic	chr18	 43063335	 43063593	+	ENSG00000266988	ENST00000588517	NA	NA	SLC14A2	NA	chr18:43053335-43075281	inner
CUST_22037_PI429285431	0.9177352	A	0.92600554	A	0.994283836932595	0	lncRNA	23646-1_{1..541}	lnc-C11orf46-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C11orf46-2:1	chr11	 30651897	 30652437	+	lnc-C11orf46-2	lnc-C11orf46-2:1	ENSG00000254489.1	RP5-1024C24.1	NA	NA	NA	inter
LNCA_21_P0003082	0.90748376	A	0.9100907	A	0.998194638518234	0	lncRNA	TCONS_00006355	NA	NA	NA	NA	XLOC_002975	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002975), lincRNA [TCONS_00006355]"	chr3:193796234-193809331	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00006355	TCONS_00006355	chr3	193796234	193809331	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012808	0.9047851	A	0.9050253	A	0.999833519906578	0	lncRNA	ENST00000508106	NA	NA	NA	NA	XLOC_l2_011309	NA	ENST00000508106	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011309), lincRNA [TCONS_l2_00022026]"	chr4:150701409-150656578	hs|4q31.23	Agilent_HUMAN_G3V2	ENST00000508106	ENST00000508106	chr4	150656578	150701409	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004821	2.3679414	A	2.8974953	A	0.692768914064746	0	lncRNA	XR_132522	XR_132522	XR_132522	NA	Hs.188825	LOC100508120	uncharacterized LOC100508120	NA	THC2533891	NA	"PREDICTED: Homo sapiens hypothetical LOC100508120, transcript variant 2 (LOC100508120), miscRNA [XR_132522]"	chr6:2398949-2399008	hs|6p25.2	Agilent_HUMAN_G3V2	XR_132522	XR_132522	chr6	  2398949	  2399008	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12637_PI429285431	0.9108382	A	1.0297803	A	0.920862653648529	0	lncRNA	14254-1_{1..2098}	lnc-BOD1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BOD1-1:3	chr5	173155007	173157104	-	lnc-BOD1-1	lnc-BOD1-1:3	XLOC_005087	linc-BOD1-3	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.40;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.80;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.50"	NA	inter
LNCA_21_P0006191	1.2057446	A	2.7610054	A	0.340267012549378	0	lncRNA	XR_108985	XR_108985	XR_108985	NA	NA	LOC100507438	uncharacterized LOC100507438	ENST00000413271	THC2711772	NA	"PREDICTED: Homo sapiens hypothetical LOC100507438 (LOC100507438), miscRNA [XR_108985]"	chr9:102299115-102299174	hs|9q22.33	Agilent_HUMAN_G3V2	XR_108985	XR_108985	chr9	102299115	102299174	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21616_PI429285431	4.631	P	5.2244034	P	0.662777531318376	0	lncRNA	23229-1_{1..336}	lnc-AGRP-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AGRP-3:1	chr16	 67576747	 67577082	-	lnc-AGRP-3	lnc-AGRP-3:1	ENSG00000259945.1	CTD-2012K14.3	FAM65A	"hg19_refFlat_FAM65A:range=chr16:67572350-675803665'pad=0,hg19_refFlat_FAM65A:range=chr16:67572350-675803665'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.10;hg19_refFlat_FAM65A:range=chr16:67571482-675803665'pad=0,hg19_refFlat_FAM65A:range=chr16:67571482-675803665'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.10;hg19_refFlat_FAM65A:range=chr16:67563726-675803665'pad=0,hg19_refFlat_FAM65A:range=chr16:67563726-675803665'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.10chr16:67566747-67580691"	NA	inner
LNCA_21_P0007212	0.9020656	A	0.889877	A	1.00848428296548	0	lncRNA	TCONS_00019306	NA	NA	NA	NA	XLOC_009139	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009139), lincRNA [TCONS_00019306]"	chr11:59663060-59663119	hs|11q12.1	Agilent_HUMAN_G3V2	TCONS_00019306	TCONS_00019306	chr11	 59663060	 59663119	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3781394	7.792823	P	7.928196	P	0.910434415897309	0	lncRNA	XR_108586	XR_108586	XR_108586	   728769	Hs.586193	LOC728769	uncharacterized LOC728769	NA	THC2534417	NA	"PREDICTED: Homo sapiens hypothetical LOC728769 (LOC728769), miscRNA [XR_108586]"	chr5:77654697-77654638	hs|5q14.1	Agilent_HUMAN_G3V2	XR_108586	XR_108586	chr5	 77654638	 77654697	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012908	6.4867206	P	6.423912	P	1.04449718193281	0	lncRNA	TCONS_l2_00022912	NA	NA	NA	NA	XLOC_l2_012046	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012046), lincRNA [TCONS_l2_00022912]"	chr5:56067428-56067369	hs|5q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00022912	TCONS_l2_00022912	chr5	 56067369	 56067428	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007574	2.6269412	A	2.2465568	A	1.30168863868013	0	lncRNA	TCONS_00020459	NA	NA	NA	NA	XLOC_009790	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009790), lincRNA [TCONS_00020459]"	chr12:67814954-67815013	hs|12q15	Agilent_HUMAN_G3V2	TCONS_00020459	TCONS_00020459	chr12	 67814954	 67815013	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39060_PI429285431	4.673542	P	5.0262213	P	0.783128360314317	0	lncRNA	40036-1_{1..1418}	n385516|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aaw.1||0.0257431|-0.2626293	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385516|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aaw.1||0.0257431|-0.2626293	chr9	 37910720	 37912137	-	NA	NA	NA	NA	SHB	"hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.20;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-69.80;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-67.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.20;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-62.60;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-72.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-77.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0,hg19_refFlat_CLPS:range=chr6:35762923-357646275'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-65.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-31.50;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20chr9:37915895-37922138"	NA	inter
LNCA_21_P0005040	0.9066037	A	0.8877606	A	1.01314670960701	0	lncRNA	TCONS_00012221	NA	NA	NA	NA	XLOC_005780	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005780), lincRNA [TCONS_00012221]"	chr6:89008643-89008584	hs|6q15	Agilent_HUMAN_G3V2	TCONS_00012221	TCONS_00012221	chr6	 89008584	 89008643	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004932	0.908028	A	0.8880874	A	1.01391773295407	0	lncRNA	TCONS_00011941	NA	NA	NA	NA	XLOC_005451	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005451), lincRNA [TCONS_00011941]"	chr6:122014114-122017769	hs|6q22.31	Agilent_HUMAN_G3V2	TCONS_00011941	TCONS_00011941	chr6	122014114	122017769	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003289	3.450574	P	2.9048753	A	1.45972712174922	0	lncRNA	TCONS_00007196	NA	NA	NA	NA	XLOC_003181	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003181), lincRNA [TCONS_00007196]"	chr3:96336058-96335999	hs|3q11.2	Agilent_HUMAN_G3V2	TCONS_00007196	TCONS_00007196	chr3	 96335999	 96336058	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40238_PI429285431	1.6334751	A	1.0295566	A	1.51983899599898	0	lncRNA	41056-2_{3001..4427}	n408132|NR_028080|lncRNA|Homosapiens||RefGeneNoncode|NR_028080||5.8337600|-0.3612266	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n408132|NR_028080|lncRNA|Homosapiens||RefGeneNoncode|NR_028080||5.8337600|-0.3612266	chr5	 92956430	 92957856	-	NA	NA	NA	NA	FAM172A	NA	chr5:92953431-93447404	inter
LNCA_21_P0004914	3.5360723	P	3.2236228	P	1.24181434292711	0	lncRNA	TCONS_00011908	NA	NA	NA	NA	XLOC_005409	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005409), lincRNA [TCONS_00011908]"	chr6:105851897-105851956	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00011908	TCONS_00011908	chr6	105851897	105851956	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24768_PI429285431	0.9200798	A	1.0936214	A	0.886663381683266	0	lncRNA	26312-1_{1..339}	lnc-KLF9-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KLF9-1:4	chr9	 72787476	 72787814	-	lnc-KLF9-1	lnc-KLF9-1:4	ENSG00000204706.6	RP11-195E11.3	MAMDC2	NA	chr9:72777476-72797683	inner
LNCA_21_P0005181	0.9134475	A	0.8951801	A	1.01274249930302	0	lncRNA	TCONS_00012823	NA	NA	NA	NA	XLOC_005909	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005909), lincRNA [TCONS_00012823]"	chr6:163761481-163760537	hs|6q26	Agilent_HUMAN_G3V2	TCONS_00012823	TCONS_00012823	chr6	163760537	163761481	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007604	1.5920104	A	0.8957975	A	1.62024603100607	0	lncRNA	ENST00000549669	NA	NA	NA	NA	XLOC_009832	NA	ENST00000549669	THC2693607	NA	"BROAD Institute lincRNA (XLOC_009832), lincRNA [TCONS_00020515]"	chr12:91203791-91204354	hs|12q21.33	Agilent_HUMAN_G3V2	ENST00000549669	ENST00000549669	chr12	 91203791	 91204354	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014249	0.9969576	A	2.0125854	A	0.494613046645068	0	lncRNA	XR_109017	XR_109017	XR_109017	NA	NA	LOC100507430	uncharacterized LOC100507430	NA	THC2629526	NA	"PREDICTED: Homo sapiens hypothetical LOC100507430 (LOC100507430), miscRNA [XR_109017]"	chr10:21930793-21930734	hs|10p12.31	Agilent_HUMAN_G3V2	XR_109017	XR_109017	chr10	 21930734	 21930793	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014571	0.99897987	A	1.0722018	A	0.950512872441569	0	lncRNA	ENST00000550029	XR_110336	XR_110336	NA	Hs.657998	LOC100505882	NA	ENST00000550029	THC2518757	NA	"PREDICTED: Homo sapiens hypothetical LOC100505882 (LOC100505882), miscRNA [XR_110336]"	chr12:104157184-104157125	hs|12q23.3	Agilent_HUMAN_G3V2	ENST00000550029	ENST00000550029	chr12	104157125	104157184	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3262366	0.95644456	A	1.0096264	A	0.963808319868735	0	lncRNA	XR_132579	XR_132579	XR_132579	100653000	NA	LOC100653000	uncharacterized LOC100653000	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100653000 (LOC100653000), miscRNA [XR_132579]"	chr12:9487213-9487154	hs|12p13.31	Agilent_HUMAN_G3V2	XR_132579	XR_132579	chr12	  9487154	  9487213	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013876	2.5875676	A	1.6817662	A	1.87358496010347	0	lncRNA	TCONS_l2_00030891	NA	NA	NA	NA	XLOC_l2_015879	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015879), lincRNA [TCONS_l2_00030891]"	chrY:9388403-9388462	hs|Yp11.2	Agilent_HUMAN_G3V2	TCONS_l2_00030891	TCONS_l2_00030891	chrY	  9388403	  9388462	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005762	3.2757607	P	3.2219138	P	1.0380291081839	0	lncRNA	TCONS_00014852	NA	NA	NA	NA	XLOC_006918	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006918), lincRNA [TCONS_00014852]"	chr8:126479175-126479234	hs|8q24.13	Agilent_HUMAN_G3V2	TCONS_00014852	TCONS_00014852	chr8	126479175	126479234	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012247	0.92172575	A	0.94539326	A	0.983728762466768	0	lncRNA	TCONS_l2_00017587	NA	NA	NA	NA	XLOC_l2_009292	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009292), lincRNA [TCONS_l2_00017587]"	chr22:18985671-19001888	hs|22q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00017587	TCONS_l2_00017587	chr22	 18985671	 19001888	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42633_PI429285431	1.6360989	A	0.92263126	A	1.63974064016162	0	lncRNA	45507-1_{1..154}	ENST00000517183 ncrna:snoRNA chromosome:GRCh37:11:117134515:117134668:1 gene:ENSG00000252992 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000517183 ncrna:snoRNA chromosome:GRCh37:11:117134515:117134668:1 gene:ENSG00000252992 gene_biotype:snoRNA transcript_biotype:snoRNA	chr11	117134515	117134668	+	ENSG00000252992	ENST00000517183	NA	NA	RNF214	NA	chr11:117124515-117144668	inner
CUST_25622_PI429285431	1.3356619	A	1.0587255	A	1.21161924603536	0	lncRNA	27152-1_{1..399}	lnc-OR4N4-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR4N4-1:7	chr15	 22291930	 22292328	+	lnc-OR4N4-1	lnc-OR4N4-1:7	ENSG00000259176.1	RP11-69H14.6	OR4M2	NA	chr15:22297500-22302225	inter
CUST_336_PI429201921	3.5110521	P	4.156649	P	0.639228261904733	0	lncRNA	221-3_{6001..7981}	TC01005080.hg.1	 TCONS_l2_00000880-XLOC_l2_000656 // Broad TUCP // linc-WNT3A chr1:+:228159872-228161284 // chr1 // 100 // 100 // 0 // --- // 0///TCONS_l2_00000879-XLOC_l2_000656 // Broad TUCP // linc-WNT3A chr1:+:228154669-228162651 // chr1 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr1:+:228154669-228162651	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00000879-XLOC_l2_000656	linc-WNT3A	chr1	228154669	228162651	+	NA	NA	NA	NA	RNF11	NA	chr1:51701945-51710768	Unknown
CUST_14635_PI429285431	3.8588378	P	3.8672774	P	0.994167192315651	0	lncRNA	16305-2_{3001..4445}	lnc-RAB23-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RAB23-3:1	chr6	 58242194	 58243638	-	lnc-RAB23-3	lnc-RAB23-3:1	XLOC_005753	linc-RAB23-4	NA	NA	NA	inter
LNCA_19_P00320966	10.472353	P	10.365248	P	1.07706476260288	0	lncRNA	TCONS_l2_00028401	NA	NA	NA	NA	XLOC_l2_014645	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014645), lincRNA [TCONS_l2_00028401]"	chr8:126963492-126963433	hs|8q24.13	Agilent_HUMAN_G3V2	TCONS_l2_00028401	TCONS_l2_00028401	chr8	126963433	126963492	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12985_PI429285431	0.91832685	A	0.9269663	A	0.994029484382255	0	lncRNA	14611-1_{1..831}	lnc-PQLC3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PQLC3-1:1	chr2	 11489183	 11490013	+	lnc-PQLC3-1	lnc-PQLC3-1:1	XLOC_001349	linc-GREB1-4	ROCK2	NA	chr2:11479183-11484711	inter
CUST_15261_PI429285431	7.5800047	P	8.059735	P	0.717111669620605	0	lncRNA	16934-1_{1..523}	lnc-HEATR6-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HEATR6-1:7	chr17	 58165558	 58166080	-	lnc-HEATR6-1	lnc-HEATR6-1:7	XLOC_012538	linc-HEATR6-2	HEATR6	NA	chr17:58155558-58156292	inter
LNCA_21_P0008391	0.9036901	A	0.9023895	A	1.00090191370281	0	lncRNA	TCONS_00022633	NA	NA	NA	NA	XLOC_010934	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010934), lincRNA [TCONS_00022633]"	chr14:101429112-101429171	hs|14q32.31	Agilent_HUMAN_G3V2	TCONS_00022633	TCONS_00022633	chr14	101429112	101429171	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3247678	4.2210135	P	4.927752	P	0.612703713330066	0	lncRNA	XR_109361	XR_109361	XR_109361	100130876	Hs.688866	LOC100130876	uncharacterized LOC100130876	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100130876 (LOC100130876), miscRNA [XR_109361]"	chr17:843546-843487	hs|17p13.3	Agilent_HUMAN_G3V2	XR_109361	XR_109361	chr17	   843487	   843546	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41957_PI429285431	9.24742	P	9.091223	P	1.11434580434435	0	lncRNA	43732-1_{1..100}	ENST00000580185 ncrna:miRNA chromosome:GRCh37:2:233415184:233415283:-1 gene:ENSG00000266620 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580185 ncrna:miRNA chromosome:GRCh37:2:233415184:233415283:-1 gene:ENSG00000266620 gene_biotype:miRNA transcript_biotype:miRNA	chr2	233415184	233415283	-	ENSG00000266620	ENST00000580185	NA	NA	CHRNG	NA	chr2:233405184-233411038	inter
CUST_3676_PI429285431	7.3949633	P	7.819059	P	0.745305752509865	0	lncRNA	3644-1_{1..841}	"transcript_id ""ENST00000437014.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000437014.1"" | genecode_v17"	chr10	 44755050	 44755890	-	ENSG00000237590.1	ENST00000437014.1	RP11-20J15.2	RP11-20J15.2-001	NA	NA	NA	inter
CUST_16901_PI429285431	0.9230131	A	1.0851858	A	0.893678176850646	0	lncRNA	18610-1_{1..588}	lnc-CTTNBP2-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CTTNBP2-3:3	chr7	117795486	117796073	-	lnc-CTTNBP2-3	lnc-CTTNBP2-3:3	XLOC_006578	linc-CTTNBP2-1	NA	NA	NA	inter
LNCA_21_P0004958	0.9099362	A	0.888937	A	1.01466198393265	0	lncRNA	THC2687938	NA	NA	NA	NA	XLOC_005511	NA	NA	THC2687938	NA	"BROAD Institute lincRNA (XLOC_005511), lincRNA [TCONS_00011997]"	chr6:155847043-155847102	hs|6q25.3	Agilent_HUMAN_G3V2	THC2687938	THC2687938	chr6	155847043	155847102	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014931	3.3860905	P	3.194136	P	1.14231021987601	0	lncRNA	XR_133293	XR_133293	XR_133293	NA	NA	LOC100653083	uncharacterized LOC100653083	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100653083 (LOC100653083), miscRNA [XR_133293]"	chr2:6072948-6072889	hs|2p25.2	Agilent_HUMAN_G3V2	XR_133293	XR_133293	chr2	  6072889	  6072948	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_28832_PI429285431	3.325777	P	2.9384017	A	1.3080115679751	0	lncRNA	30540-1_{1..359}	n326245|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000089295|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000089295|-1.0900800|-0.1948127	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326245|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000089295|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000089295|-1.0900800|-0.1948127	chr1	210706780	210707138	-	NA	NA	NA	NA	HHAT	NA	chr1:210696780-210717708	inner
LNCA_21_P0006141	3.7480245	P	3.9397519	P	0.875556752195962	0	lncRNA	TCONS_00015968	NA	NA	NA	NA	XLOC_007341	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007341), lincRNA [TCONS_00015968]"	chr9:35914580-35914639	hs|9p13.3	Agilent_HUMAN_G3V2	TCONS_00015968	TCONS_00015968	chr9	 35914580	 35914639	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7173_PI429285431	0.90868425	A	0.90017855	A	1.00591311583005	0	lncRNA	7352-1_{1..320}	"transcript_id ""ENST00000363848.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000363848.1"" | genecode_v17"	chr2	133281190	133281509	+	ENSG00000200718.1	ENST00000363848.1	RN7SKP103	RN7SKP103-201	GPR39	NA	chr2:133271190-133291509	inner
CUST_42559_PI429285431	6.655636	P	6.7191763	P	0.956913020052725	0	lncRNA	45379-1_{1..132}	ENST00000363786 ncrna:snoRNA chromosome:GRCh37:7:45145567:45145698:-1 gene:ENSG00000200656 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000363786 ncrna:snoRNA chromosome:GRCh37:7:45145567:45145698:-1 gene:ENSG00000200656 gene_biotype:snoRNA transcript_biotype:snoRNA	chr7	 45145567	 45145698	-	ENSG00000200656	ENST00000363786	NA	NA	TBRG4	NA	chr7:45139699-45151317	inter
CUST_42307_PI429285431	4.694511	P	4.8250175	P	0.913510679466019	0	lncRNA	44931-1_{1..83}	ENST00000384516 ncrna:snoRNA chromosome:GRCh37:15:25351668:25351750:1 gene:ENSG00000207245 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384516 ncrna:snoRNA chromosome:GRCh37:15:25351668:25351750:1 gene:ENSG00000207245 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 25351668	 25351750	+	ENSG00000207245	ENST00000384516	NA	NA	SNRPN	NA	chr15:25341668-25361750	inter
CUST_27100_PI429285431	3.3968127	A	3.5605729	P	0.892695340010046	0	lncRNA	28633-1_{1..567}	n324211|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257963|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257963|-1.0877900|-0.4462433	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324211|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000257963|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000257963|-1.0877900|-0.4462433	chr7	 27367986	 27368552	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0004407	0.90988815	A	0.9141781	A	0.997030849923517	0	lncRNA	TCONS_00010369	NA	NA	NA	NA	XLOC_004871	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004871), lincRNA [TCONS_00010369]"	chr5:71370851-71370792	hs|5q13.2	Agilent_HUMAN_G3V2	TCONS_00010369	TCONS_00010369	chr5	 71370792	 71370851	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3837_PI429285431	0.9096624	A	1.2766327	A	0.775409169121273	0	lncRNA	3804-1_{1..495}	"transcript_id ""ENST00000428273.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000428273.1"" | genecode_v17"	chr10	131567108	131567602	+	ENSG00000227374.1	ENST00000428273.1	RP11-109A6.3	RP11-109A6.3-001	MGMT	NA	chr10:131557108-131565783	inter
CUST_22151_PI429285431	0.9265743	A	0.9271843	A	0.999577269595545	0	lncRNA	23752-1_{1..529}	lnc-C9orf3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C9orf3-1:1	chr9	 97876257	 97876785	+	lnc-C9orf3-1	lnc-C9orf3-1:1	ENSG00000229065.1	RP11-80I15.4	FANCC	NA	chr9:97866257-97886743	inner
LNCA_21_P0003061	1.6293831	A	0.8908095	A	1.66852534348399	0	lncRNA	ENST00000481679	NA	NA	NA	NA	NAALADL2	N-acetylated alpha-linked acidic dipeptidase-like 2	ENST00000481679	NA	GO:0016020|GO:0006508|GO:0008233|GO:0016021	"BROAD Institute lincRNA (XLOC_002925), lincRNA [TCONS_00006313]"	chr3:174176364-174177067	hs|3q26.31	Agilent_HUMAN_G3V2	ENST00000481679	ENST00000481679	chr3	174176364	174177067	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13260_PI429285431	3.8544016	P	4.241207	P	0.76482129600686	0	lncRNA	14890-1_{1..598}	lnc-GBP5-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-GBP5-5:1	chr1	 90422220	 90422817	-	lnc-GBP5-5	lnc-GBP5-5:1	XLOC_000912	linc-GBP5-5	NA	"hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560944015'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-69.90;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560992615'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-63.00;hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0,hg19_refFlat_CTCFL:range=chr20:56075309-560982625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-68.80;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-68.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50"	NA	inter
LNCA_33_P3308132	11.770403	P	12.41648	P	0.639015574939362	0	lncRNA	XR_110291	XR_110291	XR_110291	   642477	Hs.474095	FLJ39632	uncharacterized LOC642477	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC642477 (FLJ39632), miscRNA [XR_110291]"	chr14:19887573-19887514	hs|14q11.2	Agilent_HUMAN_G3V2	XR_110291	XR_110291	chr14	 19887514	 19887573	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009074	1.1087489	A	0.916955	A	1.14218306562273	0	lncRNA	TCONS_00024744	NA	NA	NA	NA	XLOC_012025	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012025), lincRNA [TCONS_00024744]"	chr16:82608431-82587831	hs|16q23.3	Agilent_HUMAN_G3V2	TCONS_00024744	TCONS_00024744	chr16	 82587831	 82608431	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21517_PI429285431	1.4707265	A	1.6456316	A	0.885825786511576	0	lncRNA	23135-1_{1..453}	lnc-OR6F1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-OR6F1-1:1	chr1	247886953	247887405	-	lnc-OR6F1-1	lnc-OR6F1-1:1	ENSG00000239395.1	RP11-634B7.5	NA	NA	NA	inter
LNCA_19_P00319099	9.915234	P	10.442066	P	0.694077179205525	0	lncRNA	TCONS_00016118	NA	NA	NA	NA	XLOC_007506	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007506), lincRNA [TCONS_00016118]"	chr9:110102972-110103031	hs|9q31.2	Agilent_HUMAN_G3V2	TCONS_00016118	TCONS_00016118	chr9	110102972	110103031	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12569_PI429285431	0.973006	A	1.0164516	A	0.970334719704758	0	lncRNA	14178-1_{1..424}	lnc-NTSR2-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NTSR2-4:1	chr2	 13066727	 13067150	-	lnc-NTSR2-4	lnc-NTSR2-4:1	XLOC_001991	linc-NTSR2-3	NA	NA	NA	inter
LNCA_32_P876086	0.9873664	A	1.0215907	A	0.976556689046272	0	lncRNA	XR_110246	XR_110246	XR_110246	100130815	Hs.638556	LOC100130815	uncharacterized LOC100130815	ENST00000554299	NP500739	NA	"PREDICTED: Homo sapiens hypothetical LOC100130815 (LOC100130815), miscRNA [XR_110246]"	chr14:96742543-96742484	hs|14q32.2	Agilent_HUMAN_G3V2	XR_110246	XR_110246	chr14	 96742484	 96742543	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001274	2.4234018	A	1.5297627	A	1.85785653488803	0	lncRNA	TCONS_00000869	NA	NA	NA	NA	XLOC_000105	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000105), lincRNA [TCONS_00000869]"	chr1:27371801-27384942	hs|1p36.11	Agilent_HUMAN_G3V2	TCONS_00000869	TCONS_00000869	chr1	 27371801	 27384942	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010039	0.97191846	A	1.0171194	A	0.969154822686725	0	lncRNA	THC2657240	NA	NA	NA	NA	XLOC_013743	NA	NA	THC2657240	NA	"BROAD Institute lincRNA (XLOC_013743), lincRNA [TCONS_00028389]"	chr20:039326133-039326074	hs|20q12	Agilent_HUMAN_G3V2	THC2657240	THC2657240	chr20	 39326074	 39326133	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014417	2.9851708	A	2.6228538	A	1.285488763873	0	lncRNA	XR_109695	XR_109695	XR_109695	NA	NA	LOC100506240	uncharacterized LOC100506240	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506240 (LOC100506240), miscRNA [XR_109695]"	chr22:18285709-18285768	hs|22q11.21	Agilent_HUMAN_G3V2	XR_109695	XR_109695	chr22	 18285709	 18285768	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012838	0.91580766	A	0.92428136	A	0.994143694140602	0	lncRNA	TCONS_l2_00022449	NA	NA	NA	NA	XLOC_l2_011692	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011692), lincRNA [TCONS_l2_00022449]"	chr5:98312656-98312715	hs|5q21.1	Agilent_HUMAN_G3V2	TCONS_l2_00022449	TCONS_l2_00022449	chr5	 98312656	 98312715	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19270_PI429285431	4.8545403	P	5.501852	P	0.638468920945936	0	lncRNA	20938-1_{1..544}	lnc-SNURF-3:15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SNURF-3:15	chr15	 25442529	 25443072	+	lnc-SNURF-3	lnc-SNURF-3:15	ENSG00000224078.4	SNHG14	SNRPN	NA	chr15:25432529-25452649	inter
LNCA_21_P0003662	1.9498687	A	0.91191053	A	2.0533195559181	0	lncRNA	TCONS_00008279	NA	NA	NA	NA	XLOC_003721	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003721), lincRNA [TCONS_00008279]"	chr4:147033023-147034283	hs|4q31.22	Agilent_HUMAN_G3V2	TCONS_00008279	TCONS_00008279	chr4	147033023	147034283	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006168	1.9567797	A	2.2400324	A	0.821736240771664	0	lncRNA	TCONS_00016040	NA	NA	NA	NA	XLOC_007437	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007437), lincRNA [TCONS_00016040]"	chr9:89369990-89370049	hs|9q21.33	Agilent_HUMAN_G3V2	TCONS_00016040	TCONS_00016040	chr9	 89369990	 89370049	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38018_PI429285431	0.92238533	A	0.9296154	A	0.995001033992392	0	lncRNA	39104-1_{1..2776}	n377592|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029957||-1.2072700|-0.3817093	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n377592|NULL|lncRNA|Homosapiens|HumanlincRNA|BodyMapLinc|TCONS_00029957||-1.2072700|-0.3817093	chr6	  1015988	  1018763	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30734_PI429285431	0.9066024	A	0.9007282	A	1.00407998574005	0	lncRNA	32517-1_{1..307}	n336291|Y16185|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325925|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325925|-1.2319400|-0.2888880	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336291|Y16185|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000325925|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000325925|-1.2319400|-0.2888880	chr10	126467359	126467665	-	NA	NA	NA	NA	METTL10	NA	chr10:126457359-126477666	inner
LNCA_21_P0009709	4.774324	P	4.794462	P	0.986138371595353	0	lncRNA	THC2662154	NA	NA	NA	NA	XLOC_013040	NA	NA	THC2662154	NA	"BROAD Institute lincRNA (XLOC_013040), lincRNA [TCONS_00026991]"	chr19:032595518-032595577	hs|19q13.11	Agilent_HUMAN_G3V2	THC2662154	THC2662154	chr19	 32595518	 32595577	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003004	0.9020177	A	0.89461136	A	1.00514688362181	0	lncRNA	THC2695063	NA	NA	NA	NA	XLOC_002742	NA	NA	THC2695063	NA	"BROAD Institute lincRNA (XLOC_002742), lincRNA [TCONS_00006137]"	chr3:102446334-102446393	hs|3q12.3	Agilent_HUMAN_G3V2	THC2695063	THC2695063	chr3	102446334	102446393	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37475_PI429285431	2.949212	A	3.3108757	P	0.778266573550749	0	lncRNA	38576-1_{1..2418}	n345934|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1483|NULL|-1.2897200|-0.3234298	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345934|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1483|NULL|-1.2897200|-0.3234298	chr3	197339151	197341568	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_31031_PI429285431	5.339349	P	4.6830235	P	1.57606332246029	0	lncRNA	32820-1_{1..516}	n337244|BC127261|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389239|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389239|3.1462200|-0.0817760	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337244|BC127261|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000389239|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000389239|3.1462200|-0.0817760	chr3	 53213604	 53214119	+	NA	NA	NA	NA	PRKCD	NA	chr3:53203604-53226733	inner
LNCA_21_P0009818	0.9128245	A	0.89630985	A	1.0115128516542	0	lncRNA	BC045663	NA	BC045663	NA	Hs.542406	XLOC_013687	NA	NA	THC2501512	NA	"BROAD Institute lincRNA (XLOC_013687), lincRNA [TCONS_00027885]"	chr20:22990137-22990078	hs|20p11.21	Agilent_HUMAN_G3V2	BC045663	BC045663	chr20	 22990078	 22990137	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33735_PI429285431	0.91791296	A	1.4938263	A	0.670861408624297	0	lncRNA	35292-1_{1..3000}	n340513|BC042491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2975|NULL|-1.0770500|-0.3547408	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340513|BC042491|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2975|NULL|-1.0770500|-0.3547408	chr17	 12721310	 12724309	-	NA	NA	NA	NA	ARHGAP44	NA	chr17:12711310-12736569	inner
LNCA_21_P0014263	0.99702674	A	0.99469787	A	1.00161555327675	0	lncRNA	XR_109040	XR_109040	XR_109040	NA	NA	LOC100507164	uncharacterized LOC100507164	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507164 (LOC100507164), miscRNA [XR_109040]"	chr11:35231674-35231615	hs|11p13	Agilent_HUMAN_G3V2	XR_109040	XR_109040	chr11	 35231615	 35231674	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011583	0.9869412	A	1.0216961	A	0.976197593263328	0	lncRNA	TCONS_l2_00011163	NA	NA	NA	NA	XLOC_l2_006036	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006036), lincRNA [TCONS_l2_00011163]"	chr17:25985538-25985479	hs|17q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00011163	TCONS_l2_00011163	chr17	 25985479	 25985538	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26665_PI429285431	8.589481	P	8.213062	P	1.29811572221819	0	lncRNA	28165-1_{1..692}	lnc-PBX1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PBX1-1:1	chr1	165182079	165182770	+	lnc-PBX1-1	lnc-PBX1-1:1	ENSG00000224702.1	RP11-38C18.2	LMX1A	"hg19_refFlat_LMX1A:range=chr1:165173117-1653247965'pad=0,hg19_refFlat_LMX1A:range=chr1:165173117-1653247965'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50chr1:165172079-165192327"	NA	inner
CUST_7244_PI429285431	0.92292064	A	1.2076963	A	0.820869244578165	0	lncRNA	7901-1_{1..281}	"transcript_id ""ENST00000461771.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000461771.2"" | genecode_v17"	chr7	104552364	104552644	+	ENSG00000243352.2	ENST00000461771.2	RN7SL8P	RN7SL8P-201	LHFPL3	NA	chr7:104542364-104549005	inter
LNCA_21_P0014363	0.9149373	A	0.92273897	A	0.994606889754661	0	lncRNA	XR_109462	XR_109462	XR_109462	NA	NA	LOC100505577	uncharacterized LOC100505577	NA	THC2529051	NA	"PREDICTED: Homo sapiens hypothetical LOC100505577 (LOC100505577), miscRNA [XR_109462]"	chr18:3255511-3255452	hs|18p11.31	Agilent_HUMAN_G3V2	XR_109462	XR_109462	chr18	  3255452	  3255511	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011711	5.686075	P	6.052959	P	0.775455554400838	0	lncRNA	TCONS_l2_00012693	NA	NA	NA	NA	XLOC_l2_006813	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006813), lincRNA [TCONS_l2_00012693]"	chr19:53818356-53819029	hs|19q13.42	Agilent_HUMAN_G3V2	TCONS_l2_00012693	TCONS_l2_00012693	chr19	 53818356	 53819029	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012762	2.272599	A	2.616769	A	0.787761054739876	0	lncRNA	ENST00000505178	NA	NA	NA	NA	XLOC_l2_011001	NA	ENST00000505178	THC2774778	NA	"BROAD Institute lincRNA (XLOC_l2_011001), lincRNA [TCONS_l2_00021803]"	chr4:189700039-189700098	hs|4q35.2	Agilent_HUMAN_G3V2	ENST00000505178	ENST00000505178	chr4	189700039	189700098	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012384	0.90403754	A	2.534669	A	0.322946824600793	0	lncRNA	TCONS_l2_00018703	NA	NA	NA	NA	XLOC_l2_009794	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009794), lincRNA [TCONS_l2_00018703]"	chr3:97823608-97823667	hs|3q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00018703	TCONS_l2_00018703	chr3	 97823608	 97823667	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002205	4.533552	P	5.138441	P	0.657521967460699	0	lncRNA	TCONS_00003661	NA	NA	NA	NA	XLOC_001448	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001448), lincRNA [TCONS_00003661]"	chr2:43358523-43358582	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00003661	TCONS_00003661	chr2	 43358523	 43358582	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35144_PI429285431	0.9140909	A	0.90455663	A	1.00663053769654	0	lncRNA	36546-1_{1..636}	n342115|AL357202|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4597|NULL|-1.1288800|-0.4123882	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342115|AL357202|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4597|NULL|-1.1288800|-0.4123882	chr6	119593250	119593885	-	NA	NA	NA	NA	MAN1A1	NA	chr6:119583250-119603884	inner
CUST_43069_PI429285431	2.266304	A	2.8294578	A	0.676820982477835	0	lncRNA	47065-1_{1..105}	ENST00000516032 ncrna:snRNA chromosome:GRCh37:Y:2652790:2652894:1 gene:ENSG00000251841 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516032 ncrna:snRNA chromosome:GRCh37:Y:2652790:2652894:1 gene:ENSG00000251841 gene_biotype:snRNA transcript_biotype:snRNA	chrY	  2652790	  2652894	+	ENSG00000251841	ENST00000516032	NA	NA	SRY	NA	chrY:2654896-2655792	inter
CUST_27364_PI429285431	2.9202235	A	3.3782299	P	0.727991545018544	0	lncRNA	28927-1_{1..539}	n324526|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040480|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040480|-0.9628880|-0.2486957	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324526|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040480|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040480|-0.9628880|-0.2486957	chr6	 40347282	 40347820	-	NA	NA	NA	NA	LRFN2	NA	chr6:40359373-40361954	inter
CUST_17492_PI429285431	5.013109	P	5.290264	P	0.825216744267552	0	lncRNA	19219-1_{1..452}	lnc-TLE3-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TLE3-1:2	chr15	 70265672	 70266123	-	lnc-TLE3-1	lnc-TLE3-1:2	XLOC_011519	linc-ANP32A-2	NA	NA	NA	inter
LNCA_21_P0003303	5.059138	P	5.5296755	P	0.721695667959088	0	lncRNA	XR_108514	XR_108514	XR_108514	NA	NA	LOC100505547	uncharacterized LOC100505547	ENST00000434969	THC2617778	NA	"PREDICTED: Homo sapiens hypothetical LOC100505547 (LOC100505547), miscRNA [XR_108514]"	chr3:176322179-176322120	hs|3q26.32	Agilent_HUMAN_G3V2	XR_108514	XR_108514	chr3	176322120	176322179	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012739	1.0006804	A	1.01022	A	0.993409466615853	0	lncRNA	XR_109834	XR_109834	XR_109834	NA	Hs.730133	LOC100507487	uncharacterized LOC100507487	NA	THC2608669	NA	"PREDICTED: Homo sapiens hypothetical LOC100507487 (LOC100507487), miscRNA [XR_109834]"	chr4:129440318-129440377	hs|4q28.2	Agilent_HUMAN_G3V2	XR_109834	XR_109834	chr4	129440318	129440377	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13646_PI429285431	2.9884157	P	3.0997727	P	0.925716922250004	0	lncRNA	15284-1_{1..208}	lnc-FOXJ1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FOXJ1-1:1	chr17	 74117509	 74117716	-	lnc-FOXJ1-1	lnc-FOXJ1-1:1	XLOC_012578	linc-EXOC7	NA	NA	NA	inter
CUST_38494_PI429285431	0.9414557	A	1.5560248	A	0.653124937890884	0	lncRNA	39509-2_{3001..6000}	n383026|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fkg.2||2.2495400|-0.1421932	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383026|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002fkg.2||2.2495400|-0.1421932	chr16	 87734748	 87737747	-	NA	NA	NA	NA	JPH3	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60chr16:87721748-87731762"	NA	inner
CUST_7612_PI429285431	0.9259228	A	1.2115945	A	0.820359571161712	0	lncRNA	9247-1_{1..2054}	lnc-NAT2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-NAT2-1:1	chr8	 18590353	 18592406	+	lnc-NAT2-1	lnc-NAT2-1:1	ENSG00000187229	RP11-161I2.1	PSD3	NA	chr8:18580353-18601915	inner
CUST_17324_PI429285431	0.925017	A	0.95850074	A	0.977058100951112	0	lncRNA	19042-1_{1..683}	lnc-SORCS3-5:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-SORCS3-5:5	chr10	107958666	107959348	+	lnc-SORCS3-5	lnc-SORCS3-5:5	XLOC_008603	linc-ADD3-8	NA	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10"	NA	inter
LNCA_21_P0006958	0.9268333	A	0.97894704	A	0.964522140049642	0	lncRNA	TCONS_00018418	NA	NA	NA	NA	XLOC_008704	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008704), lincRNA [TCONS_00018418]"	chr10:4804691-4804632	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_00018418	TCONS_00018418	chr10	  4804632	  4804691	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3103_PI429285431	0.9904267	A	1.0150344	A	0.983087885072033	0	lncRNA	3083-1_{1..422}	"transcript_id ""ENST00000522228.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000522228.1"" | genecode_v17"	chr8	 53207015	 53207436	+	ENSG00000253924.1	ENST00000522228.1	RP11-1023P17.2	RP11-1023P17.2-001	ST18	NA	chr8:53197015-53224502	inner
LNCA_21_P0014870	4.552003	P	5.1939216	P	0.640860119785391	0	lncRNA	XR_132765	XR_132765	XR_132765	NA	NA	LOC100652897	density-regulated protein-like	NA	NA	NA	"PREDICTED: Homo sapiens density-regulated protein-like (LOC100652897), miscRNA [XR_132765]"	chr12:76451646-76451705	hs|12q21.2	Agilent_HUMAN_G3V2	XR_132765	XR_132765	chr12	 76451646	 76451705	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008343	0.9200956	A	0.931069	A	0.992422672523531	0	lncRNA	TCONS_00022519	NA	NA	NA	NA	XLOC_010844	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010844), lincRNA [TCONS_00022519]"	chr14:57265959-57266018	hs|14q22.3	Agilent_HUMAN_G3V2	TCONS_00022519	TCONS_00022519	chr14	 57265959	 57266018	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22057_PI429285431	0.92018104	A	0.9710485	A	0.965355707763689	0	lncRNA	23665-1_{1..866}	lnc-SRPK2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRPK2-4:2	chr7	104444403	104445268	-	lnc-SRPK2-4	lnc-SRPK2-4:2	ENSG00000226869.2	RP11-203P23.1	LHFPL3	NA	chr7:104434403-104454554	inner
LNCA_21_P0010876	5.2070947	P	4.849866	P	1.28096290701139	0	lncRNA	ENST00000532854	NA	BC051298	NA	Hs.463017	XLOC_l2_001971	NA	ENST00000532854	THC2545864	NA	"BROAD Institute lincRNA (XLOC_l2_001971), lincRNA [TCONS_l2_00003557]"	chr10:48200350-48200409	hs|10q11.22	Agilent_HUMAN_G3V2	ENST00000532854	ENST00000532854	chr10	 48200350	 48200409	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38768_PI429285431	1.1204867	A	0.9000318	A	1.16510089961118	0	lncRNA	39761-1_{1..833}	n384380|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003flo.2||-1.0721500|-0.3046419	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n384380|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003flo.2||-1.0721500|-0.3046419	chr3	183015456	183016288	+	NA	NA	NA	NA	MCF2L2	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-68.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90chr3:183005456-183026289"	NA	inner
LNCA_21_P0003716	5.3213787	P	5.51014	P	0.877358699434395	0	lncRNA	TCONS_00008415	NA	NA	NA	NA	XLOC_003867	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003867), lincRNA [TCONS_00008415]"	chr4:6309073-6309014	hs|4p16.1	Agilent_HUMAN_G3V2	TCONS_00008415	TCONS_00008415	chr4	  6309014	  6309073	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19698_PI429285431	9.190418	P	8.873464	P	1.24569769615134	0	lncRNA	21356-1_{1..215}	lnc-ZFX-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZFX-1:1	chrX	 24095461	 24095675	+	lnc-ZFX-1	lnc-ZFX-1:1	ENSG00000240556.1	RP11-479I1.4	EIF2S3	NA	chrX:24085461-24096927	inner
LNCA_21_P0002581	0.9027784	A	0.8977995	A	1.00345707243559	0	lncRNA	TCONS_00004725	NA	NA	NA	NA	XLOC_001406	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001406), lincRNA [TCONS_00004725]"	chr2:27940287-27940346	hs|2p23.2	Agilent_HUMAN_G3V2	TCONS_00004725	TCONS_00004725	chr2	 27940287	 27940346	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43814_PI429285431	5.7225027	P	6.2375293	P	0.699780030333888	0	lncRNA	48539-1_{1..3000}	"gi|256985184|ref|NR_028323.1| Homo sapiens solute carrier family 5 (sodium-dependent vitamin transporter), member 6 (SLC5A6), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|256985184|ref|NR_028323.1| Homo sapiens solute carrier family 5 (sodium-dependent vitamin transporter), member 6 (SLC5A6), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_028323.1	NA	NA	NA	"hg19_refFlat_ATRAID:range=chr2:27435072-274398165'pad=0,hg19_refFlat_ATRAID:range=chr2:27435072-274398165'pad=0 3'pad=0 strand=+ repeatMasking=none,-103.10"	NA	Unknown
LNCA_21_P0011441	2.4200668	A	2.774624	A	0.782109655746811	0	lncRNA	TCONS_l2_00009774	NA	NA	NA	NA	XLOC_l2_005244	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005244), lincRNA [TCONS_l2_00009774]"	chr16:58884865-58884924	hs|16q21	Agilent_HUMAN_G3V2	TCONS_l2_00009774	TCONS_l2_00009774	chr16	 58884865	 58884924	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36885_PI429285431	0.9102355	A	1.0743313	A	0.892487705198014	0	lncRNA	38044-1_{1..2083}	n345357|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_906|NULL|-1.3408100|-0.3058558	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345357|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_906|NULL|-1.3408100|-0.3058558	chr18	 33141617	 33143699	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_42660_PI429285431	7.5054393	P	7.4624815	P	1.03022381829712	0	lncRNA	45562-1_{1..129}	ENST00000391159 ncrna:snoRNA chromosome:GRCh37:12:72033135:72033263:1 gene:ENSG00000212461 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000391159 ncrna:snoRNA chromosome:GRCh37:12:72033135:72033263:1 gene:ENSG00000212461 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 72033135	 72033263	+	ENSG00000212461	ENST00000391159	NA	NA	ZFC3H1	NA	chr12:72023135-72043263	inner
LNCA_21_P0005718	0.9108474	A	0.8895618	A	1.0148634319382	0	lncRNA	TCONS_00014755	NA	NA	NA	NA	XLOC_006839	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006839), lincRNA [TCONS_00014755]"	chr8:72616683-72616742	hs|8q13.3	Agilent_HUMAN_G3V2	TCONS_00014755	TCONS_00014755	chr8	 72616683	 72616742	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012246	6.6315737	P	6.964092	P	0.794149044297742	0	lncRNA	TCONS_l2_00017566	NA	NA	NA	NA	XLOC_l2_009285	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009285), lincRNA [TCONS_l2_00017566]"	chr22:17528276-17538425	hs|22q11.1	Agilent_HUMAN_G3V2	TCONS_l2_00017566	TCONS_l2_00017566	chr22	 17528276	 17538425	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014787	1.5547756	A	2.704546	A	0.450696952482482	0	lncRNA	XR_132571	XR_132571	XR_132571	NA	NA	LOC100652968	uncharacterized LOC100652968	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652968, transcript variant 2 (LOC100652968), miscRNA [XR_132571]"	chr10:32197845-32217624	hs|10p11.22	Agilent_HUMAN_G3V2	XR_132571	XR_132571	chr10	 32197845	 32217624	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008527	1.0014638	A	1.497796	A	0.708906763696825	0	lncRNA	TCONS_00022675	NA	NA	NA	NA	XLOC_010971	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010971), lincRNA [TCONS_00022675]"	chr14:24195280-24194553	hs|14q11.2	Agilent_HUMAN_G3V2	TCONS_00022675	TCONS_00022675	chr14	 24194553	 24195280	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003850	0.99029076	A	1.0224028	A	0.977987519781818	0	lncRNA	TCONS_00008877	NA	NA	NA	NA	XLOC_003668	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003668), lincRNA [TCONS_00008877]"	chr4:120328980-120329039	hs|4q26	Agilent_HUMAN_G3V2	TCONS_00008877	TCONS_00008877	chr4	120328980	120329039	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008152	1.7567129	A	2.4026375	A	0.63908308131788	0	lncRNA	TCONS_00021986	NA	NA	NA	NA	XLOC_010588	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010588), lincRNA [TCONS_00021986]"	chr13:44976216-44976157	hs|13q14.11	Agilent_HUMAN_G3V2	TCONS_00021986	TCONS_00021986	chr13	 44976157	 44976216	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010148	0.91325676	A	0.9197271	A	0.995525144208188	0	lncRNA	ENST00000433101	NA	NA	NA	NA	XLOC_013883	NA	ENST00000433101	NA	NA	"BROAD Institute lincRNA (XLOC_013883), lincRNA [TCONS_00028807]"	chr21:24862700-24862759	hs|21q21.2	Agilent_HUMAN_G3V2	ENST00000433101	ENST00000433101	chr21	 24862700	 24862759	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45915_PI429285431	10.423915	P	10.506085	P	0.94463572326877	0	lncRNA	50225-1_{1..2046}	"gi|224967097|ref|NR_027288.1| Homo sapiens SUMO1 activating enzyme subunit 1 pseudogene (LOC341056), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224967097|ref|NR_027288.1| Homo sapiens SUMO1 activating enzyme subunit 1 pseudogene (LOC341056), non-coding RNA"	Chr11	122888274	122890319	+	341056	NR_027288.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003190	1.9281133	A	0.9081818	A	2.02782267509372	0	lncRNA	TCONS_00006708	NA	NA	NA	NA	XLOC_003327	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003327), lincRNA [TCONS_00006708]"	chr3:172312230-172312171	hs|3q26.31	Agilent_HUMAN_G3V2	TCONS_00006708	TCONS_00006708	chr3	172312171	172312230	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13477_PI429285431	0.92235196	A	0.92971486	A	0.99490942772809	0	lncRNA	15115-1_{1..444}	lnc-PCGF5-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PCGF5-1:1	chr10	 92872234	 92872677	+	lnc-PCGF5-1	lnc-PCGF5-1:1	XLOC_008561	linc-PCGF5-1	NA	NA	NA	inter
CUST_37352_PI429285431	2.758021	A	2.042717	A	1.64182914206288	0	lncRNA	38456-1_{1..1386}	n345795|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1344|NULL|-1.5502300|-0.1422230	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345795|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1344|NULL|-1.5502300|-0.1422230	chr22	 46436321	 46437706	-	NA	NA	NA	NA	C22orf26	NA	chr22:46446339-46450024	inter
CUST_15466_PI429285431	4.4113426	P	4.837638	P	0.744170238901407	0	lncRNA	17154-1_{1..917}	lnc-MFAP4-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MFAP4-4:1	chr17	 19398187	 19399103	-	lnc-MFAP4-4	lnc-MFAP4-4:1	XLOC_012416	linc-MFAP4-1	NA	NA	NA	inter
LNCA_21_P0003855	3.9774272	P	4.6537476	P	0.625759242555373	0	lncRNA	TCONS_00008906	NA	NA	NA	NA	XLOC_003739	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003739), lincRNA [TCONS_00008906]"	chr4:153073507-153073566	hs|4q31.3	Agilent_HUMAN_G3V2	TCONS_00008906	TCONS_00008906	chr4	153073507	153073566	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013673	0.9132235	A	0.89119065	A	1.01538922090188	0	lncRNA	TCONS_l2_00029501	NA	NA	NA	NA	XLOC_l2_015303	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015303), lincRNA [TCONS_l2_00029501]"	chr9:99857490-99857431	hs|9q22.33	Agilent_HUMAN_G3V2	TCONS_l2_00029501	TCONS_l2_00029501	chr9	 99857431	 99857490	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010465	0.9149225	A	0.8964803	A	1.01286521277246	0	lncRNA	TCONS_00029809	NA	NA	NA	NA	XLOC_014244	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014244), lincRNA [TCONS_00029809]"	chr22:39465900-39465959	hs|22q13.1	Agilent_HUMAN_G3V2	TCONS_00029809	TCONS_00029809	chr22	 39465900	 39465959	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7587_PI429285431	0.99101067	A	1.010905	A	0.986304943617802	0	lncRNA	9222-1_{1..3000}	lnc-SMAD6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SMAD6-1:1	chr15	 66973928	 66976927	+	lnc-SMAD6-1	lnc-SMAD6-1:1	ENSG00000250434	AC013564.1	NA	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10"	NA	inter
LNCA_21_P0003098	1.0013051	A	2.1729946	A	0.44390119574634	0	lncRNA	TCONS_00006402	NA	NA	NA	NA	XLOC_003026	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003026), lincRNA [TCONS_00006402]"	chr3:5675159-5671632	hs|3p26.1	Agilent_HUMAN_G3V2	TCONS_00006402	TCONS_00006402	chr3	  5671632	  5675159	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12768_PI429285431	1.9018351	A	2.134292	A	0.851184095951594	0	lncRNA	14391-1_{1..1017}	lnc-AF165138.7.1-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AF165138.7.1-3:2	chr21	 16135159	 16136175	-	lnc-AF165138.7.1-3	lnc-AF165138.7.1-3:2	XLOC_014003	linc-SAMSN1-3	NA	NA	NA	inter
CUST_37009_PI429285431	1.5155699	A	0.91682243	A	1.51440121119477	0	lncRNA	38149-1_{1..2964}	n345466|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1015|NULL|-1.2988700|-0.2244951	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345466|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1015|NULL|-1.2988700|-0.2244951	chr1	156052671	156055634	-	NA	NA	NA	NA	MEX3A	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-54.80;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-89.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0,hg19_refFlat_CHEK2:range=chr22:29083885-291307095'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-57.50chr1:156042671-156051789"	NA	inter
LNCA_21_P0013652	2.9750457	A	1.6150595	A	2.56682724219927	0	lncRNA	TCONS_l2_00029348	NA	NA	NA	NA	XLOC_l2_015213	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015213), lincRNA [TCONS_l2_00029348]"	chr9:68424461-68424402	hs|9q13	Agilent_HUMAN_G3V2	TCONS_l2_00029348	TCONS_l2_00029348	chr9	 68424402	 68424461	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001061	4.7541447	P	4.7595253	P	0.996277398405391	0	lncRNA	ENST00000456240	NA	NA	NA	NA	XLOC_000558	NA	ENST00000456240	THC2664033	NA	"BROAD Institute lincRNA (XLOC_000558), lincRNA [TCONS_00000389]"	chr1:213967838-213967897	hs|1q32.3	Agilent_HUMAN_G3V2	ENST00000456240	ENST00000456240	chr1	213967838	213967897	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006000	1.5999222	A	1.3754255	A	1.16836957890377	0	lncRNA	ENST00000443838	NA	NA	NA	NA	XLOC_007291	NA	ENST00000443838	NA	NA	"BROAD Institute lincRNA (XLOC_007291), lincRNA [TCONS_00015651]"	chr9:16122293-16122352	hs|9p22.3	Agilent_HUMAN_G3V2	ENST00000443838	ENST00000443838	chr9	 16122293	 16122352	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004939	0.91079086	A	0.91527575	A	0.996896138111444	0	lncRNA	TCONS_00011948	NA	NA	NA	NA	XLOC_005461	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005461), lincRNA [TCONS_00011948]"	chr6:129015396-129015455	hs|6q22.33	Agilent_HUMAN_G3V2	TCONS_00011948	TCONS_00011948	chr6	129015396	129015455	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006556	2.508308	A	3.142342	P	0.644372129142928	0	lncRNA	XR_110926	XR_110926	XR_110926	NA	Hs.435716	LOC100506502	uncharacterized LOC100506502	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506502 (LOC100506502), miscRNA [XR_110926]"	chrX:7897385-7897444	hs|Xp22.31	Agilent_HUMAN_G3V2	XR_110926	XR_110926	chrX	  7897385	  7897444	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014580	0.93120366	A	0.8913179	A	1.02803241854823	0	lncRNA	XR_110374	XR_110374	XR_110374	NA	NA	LOC100507195	uncharacterized LOC100507195	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507195 (LOC100507195), miscRNA [XR_110374]"	chr12:68726612-68726553	hs|12q15	Agilent_HUMAN_G3V2	XR_110374	XR_110374	chr12	 68726553	 68726612	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003724	0.91559416	A	0.8964194	A	1.01337964786136	0	lncRNA	TCONS_00008443	NA	NA	NA	NA	XLOC_003894	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003894), lincRNA [TCONS_00008443]"	chr4:15852222-15852163	hs|4p15.32	Agilent_HUMAN_G3V2	TCONS_00008443	TCONS_00008443	chr4	 15852163	 15852222	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010030	7.3730874	P	7.464156	P	0.938827105122334	0	lncRNA	TCONS_00028359	NA	NA	NA	NA	XLOC_013714	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013714), lincRNA [TCONS_00028359]"	chr20:26157506-26157447	hs|20p11.1	Agilent_HUMAN_G3V2	TCONS_00028359	TCONS_00028359	chr20	 26157447	 26157506	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003196	1.0020672	A	1.0185671	A	0.988628293093644	0	lncRNA	TCONS_00006719	NA	NA	NA	NA	XLOC_003347	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003347), lincRNA [TCONS_00006719]"	chr3:181875098-181867352	hs|3q26.33	Agilent_HUMAN_G3V2	TCONS_00006719	TCONS_00006719	chr3	181867352	181875098	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9390_PI429285431	0.92833996	A	1.0885623	A	0.894887145354618	0	lncRNA	10894-1_{1..325}	lnc-FGF9-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FGF9-3:3	chr13	 22848662	 22848986	+	lnc-FGF9-3	lnc-FGF9-3:3	XLOC_010302	linc-SGCG-7	NA	NA	NA	inter
LNCA_21_P0003193	0.9964925	A	1.023036	A	0.981769667925435	0	lncRNA	TCONS_00006716	NA	NA	NA	NA	XLOC_003343	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003343), lincRNA [TCONS_00006716]"	chr3:181138097-181138038	hs|3q26.33	Agilent_HUMAN_G3V2	TCONS_00006716	TCONS_00006716	chr3	181138038	181138097	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006960	0.9931661	A	1.0232477	A	0.979364902348245	0	lncRNA	TCONS_00018420	NA	NA	NA	NA	XLOC_008709	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008709), lincRNA [TCONS_00018420]"	chr10:5605455-5605396	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_00018420	TCONS_00018420	chr10	  5605396	  5605455	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014586	4.123259	P	4.7028503	P	0.669153314487277	0	lncRNA	XR_110396	XR_110396	XR_110396	NA	Hs.679136	LOC100128262	uncharacterized LOC100128262	NA	THC2611145	NA	"PREDICTED: Homo sapiens hypothetical LOC100128262 (LOC100128262), miscRNA [XR_110396]"	chr3:195637709-195637768	hs|3q29	Agilent_HUMAN_G3V2	XR_110396	XR_110396	chr3	195637709	195637768	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008604	5.5261016	P	5.5834618	P	0.961020958778921	0	lncRNA	TCONS_00023326	NA	NA	NA	NA	XLOC_011190	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011190), lincRNA [TCONS_00023326]"	chr15:26700226-26700285	hs|15q12	Agilent_HUMAN_G3V2	TCONS_00023326	TCONS_00023326	chr15	 26700226	 26700285	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30746_PI429285431	5.0919466	P	5.267854	P	0.885210580376938	0	lncRNA	32531-1_{1..228}	n336411|Z11262|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326210|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326210|-1.1478200|-0.3438943	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336411|Z11262|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000326210|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000326210|-1.1478200|-0.3438943	chr7	 38289105	 38289332	-	NA	NA	NA	NA	TARP	NA	chr7:38295938-38313248	inner
LNCA_21_P0009882	3.026585	P	3.274984	P	0.841830100058259	0	lncRNA	ENST00000442389	NA	NA	NA	NA	XLOC_013654	NA	ENST00000442389	NA	NA	"BROAD Institute lincRNA (XLOC_013654), lincRNA [TCONS_00028006]"	chr20:12286320-12286261	hs|20p12.1	Agilent_HUMAN_G3V2	ENST00000442389	ENST00000442389	chr20	 12286261	 12286320	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40106_PI429285431	11.4354315	P	11.021976	P	1.33187205688083	0	lncRNA	40951-1_{1..1520}	n407526|NR_026981|lncRNA|Homosapiens||RefGeneNoncode|NR_026981||2.4939400|-0.3276896	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n407526|NR_026981|lncRNA|Homosapiens||RefGeneNoncode|NR_026981||2.4939400|-0.3276896	chr22	 51195513	 51197032	+	NA	NA	NA	NA	RABL2B	"hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0,hg19_refFlat_HLA-F:range=chr6_cox_hap2:1207430-12111375'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0,hg19_refFlat_HLA-F:range=chr6_ssto_hap7:1029021-10327025'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0,hg19_refFlat_HLA-F:range=chr6:29691241-296949525'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0,hg19_refFlat_HLA-F:range=chr6_qbl_hap6:992100-9958135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0,hg19_refFlat_HLA-F:range=chr6_dbb_hap3:992123-9958365'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0,hg19_refFlat_HLA-F:range=chr6_mann_hap4:991746-9954595'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90chr22:51205920-51222087"	NA	inter
CUST_46467_PI429285431	1.134967	A	0.976243	A	1.11629938385688	0	lncRNA	50667-2_{3001..5944}	"gi|223718264|ref|NR_026891.1| Homo sapiens uncharacterized protein FLJ10038 (FLJ10038), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223718264|ref|NR_026891.1| Homo sapiens uncharacterized protein FLJ10038 (FLJ10038), non-coding RNA"	Chr15	 50644133	 50647076	-	55056	NR_026891.1	NA	NA	NA	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.30;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-47.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70"	NA	inter
LNCA_21_P0011300	0.90705067	A	0.88885736	A	1.01269049096932	0	lncRNA	TCONS_l2_00008488	NA	NA	NA	NA	XLOC_l2_004595	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004595), lincRNA [TCONS_l2_00008488]"	chr15:28995632-28995691	hs|15q13.1	Agilent_HUMAN_G3V2	TCONS_l2_00008488	TCONS_l2_00008488	chr15	 28995632	 28995691	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005464	3.1180882	P	3.274234	P	0.897419352113761	0	lncRNA	TCONS_00013673	NA	NA	NA	NA	XLOC_006333	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006333), lincRNA [TCONS_00013673]"	chr7:2360784-2360725	hs|7p22.3	Agilent_HUMAN_G3V2	TCONS_00013673	TCONS_00013673	chr7	  2360725	  2360784	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38066_PI429285431	8.113253	P	8.314351	P	0.869888260563325	0	lncRNA	39144-1_{1..1577}	n381013|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001aai.1||6.4032900|-0.1287069	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381013|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001aai.1||6.4032900|-0.1287069	chr1	    16857	    18433	-	NA	NA	NA	NA	LOC100652771	NA	chr1:12190-13639	inter
CUST_14917_PI429285431	4.718349	P	5.1809816	P	0.725660878838148	0	lncRNA	16579-1_{1..1455}	lnc-HDAC2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HDAC2-2:3	chr6	113970606	113972060	-	lnc-HDAC2-2	lnc-HDAC2-2:3	XLOC_005810	linc-LAMA4-2	NA	NA	NA	inter
CUST_43073_PI429285431	0.927942	A	0.9022852	A	1.01794301441706	0	lncRNA	47169-1_{1..123}	ENST00000408448 ncrna:snRNA chromosome:GRCh37:X:138967640:138967762:1 gene:ENSG00000221375 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408448 ncrna:snRNA chromosome:GRCh37:X:138967640:138967762:1 gene:ENSG00000221375 gene_biotype:snRNA transcript_biotype:snRNA	chrX	138967640	138967762	+	ENSG00000221375	ENST00000408448	NA	NA	NA	NA	NA	inter
LNCA_21_P0001208	0.90763	A	0.89685184	A	1.00749882765043	0	lncRNA	ENST00000434300	NA	NA	NA	NA	XLOC_001133	NA	ENST00000434300	NA	NA	"BROAD Institute lincRNA (XLOC_001133), lincRNA [TCONS_00000706]"	chr1:192486835-192486776	hs|1q31.2	Agilent_HUMAN_G3V2	ENST00000434300	ENST00000434300	chr1	192486776	192486835	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012983	1.0023662	A	1.0196226	A	0.988110026078854	0	lncRNA	ENST00000514597	XR_108577	XR_108577	NA	NA	XLOC_l2_012023	NA	ENST00000514597	THC2617352	NA	"PREDICTED: Homo sapiens hypothetical LOC100506674 (LOC100506674), miscRNA [XR_108577]"	chr5:44745199-44745140	hs|5p12	Agilent_HUMAN_G3V2	ENST00000514597	ENST00000514597	chr5	 44745140	 44745199	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007697	5.075427	P	5.4914813	P	0.749471591816154	0	lncRNA	TCONS_00020752	NA	NA	NA	NA	XLOC_010040	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010040), lincRNA [TCONS_00020752]"	chr12:30976033-30975974	hs|12p11.21	Agilent_HUMAN_G3V2	TCONS_00020752	TCONS_00020752	chr12	 30975974	 30976033	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013210	0.99444366	A	1.0238008	A	0.979856821187562	0	lncRNA	TCONS_l2_00025925	NA	NA	NA	NA	XLOC_l2_013436	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013436), lincRNA [TCONS_l2_00025925]"	chr7:63385506-63385565	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025925	TCONS_l2_00025925	chr7	 63385506	 63385565	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014832	3.4109173	P	3.9924562	P	0.66825058474719	0	lncRNA	XR_132690	XR_132690	XR_132690	NA	NA	LOC100652931	putative transcript Y 11 protein-like	NA	NA	NA	"PREDICTED: Homo sapiens putative transcript Y 11 protein-like (LOC100652931), miscRNA [XR_132690]"	chrY:24467964-24473062	hs|Yq11.223	Agilent_HUMAN_G3V2	XR_132690	XR_132690	chrY	 24467964	 24473062	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33454_PI429285431	0.9291024	A	0.9260659	A	1.00210695793678	0	lncRNA	35029-2_{3001..4844}	n340187|BX647987|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2648|NULL|0.2216690|-0.3667064	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n340187|BX647987|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2648|NULL|0.2216690|-0.3667064	chr4	100013010	100014853	+	NA	NA	NA	NA	ADH5	"hg19_refFlat_ADH1C:range=chr4:100257909-1002738325'pad=0,hg19_refFlat_ADH1C:range=chr4:100257909-1002738325'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ADH1B:range=chr4:100228997-1002424885'pad=0,hg19_refFlat_ADH1B:range=chr4:100228997-1002424885'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70;hg19_refFlat_ADH1A:range=chr4:100197781-1002120715'pad=0,hg19_refFlat_ADH1A:range=chr4:100197781-1002120715'pad=0 3'pad=0 strand=- repeatMasking=none,-90.70chr4:100000010-100009931"	NA	inner
LNCA_21_P0003944	0.95765024	A	1.8654066	A	0.533013374868424	0	lncRNA	ENST00000515085	NA	NA	NA	NA	XLOC_004238	NA	ENST00000515085	NA	NA	"BROAD Institute lincRNA (XLOC_004238), lincRNA [TCONS_00009322]"	chr5:526650-526709	hs|5p15.33	Agilent_HUMAN_G3V2	ENST00000515085	ENST00000515085	chr5	   526650	   526709	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00802607	0.9302621	A	0.9935026	A	0.957111892527664	0	lncRNA	TCONS_00003738	NA	NA	NA	NA	XLOC_001537	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001537), lincRNA [TCONS_00003738]"	chr2:75169804-75169863	hs|2p12	Agilent_HUMAN_G3V2	TCONS_00003738	TCONS_00003738	chr2	 75169804	 75169863	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002270	5.3957744	P	5.239618	P	1.11431444511611	0	lncRNA	TCONS_00003819	NA	NA	NA	NA	XLOC_001624	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001624), lincRNA [TCONS_00003819]"	chr2:112044437-112044496	hs|2q13	Agilent_HUMAN_G3V2	TCONS_00003819	TCONS_00003819	chr2	112044437	112044496	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006701	0.92052525	A	1.8318061	A	0.531712817631627	0	lncRNA	ENST00000452286	NA	NA	NA	NA	XLOC_008603	NA	ENST00000452286	THC2671618	NA	"BROAD Institute lincRNA (XLOC_008603), lincRNA [TCONS_00017865]"	chr10:107946745-107948333	hs|10q25.1	Agilent_HUMAN_G3V2	ENST00000452286	ENST00000452286	chr10	107946745	107948333	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21477_PI429285431	3.2752528	P	3.7989864	P	0.695569413956205	0	lncRNA	23095-1_{1..316}	lnc-C8orf42-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C8orf42-1:1	chr8	   675777	   676092	-	lnc-C8orf42-1	lnc-C8orf42-1:1	ENSG00000254207.1	RP11-43A14.1	ERICH1	NA	chr8:665777-681226	inner
LNCA_21_P0014086	0.9085142	A	0.91076857	A	0.998438610030225	0	lncRNA	XR_108389	XR_108389	XR_108389	NA	Hs.135772	LOC100506317	uncharacterized LOC100506317	NA	THC2689239	NA	"PREDICTED: Homo sapiens hypothetical LOC100506317 (LOC100506317), miscRNA [XR_108389]"	chr2:9345628-9345569	hs|2p25.1	Agilent_HUMAN_G3V2	XR_108389	XR_108389	chr2	  9345569	  9345628	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012595	0.9055831	A	0.9048928	A	1.00047859398832	0	lncRNA	TCONS_l2_00020588	NA	NA	NA	NA	XLOC_l2_010724	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010724), lincRNA [TCONS_l2_00020588]"	chr4:80229953-80230012	hs|4q21.21	Agilent_HUMAN_G3V2	TCONS_l2_00020588	TCONS_l2_00020588	chr4	 80229953	 80230012	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001978	3.6709466	P	4.1698484	P	0.707645245850608	0	lncRNA	ENST00000434807	NA	NA	NA	NA	XLOC_001897	NA	ENST00000434807	THC2663963	NA	"BROAD Institute lincRNA (XLOC_001897), lincRNA [TCONS_00003124]"	chr2:231752124-231752183	hs|2q37.1	Agilent_HUMAN_G3V2	ENST00000434807	ENST00000434807	chr2	231752124	231752183	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27240_PI429285431	3.9902627	P	4.3639627	P	0.771800562259104	0	lncRNA	28789-1_{1..370}	n324382|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042328|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042328|-1.2688100|-0.3055967	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324382|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000042328|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000042328|-1.2688100|-0.3055967	chr6	134999319	134999688	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0007808	0.91035426	A	0.889547	A	1.01452699957286	0	lncRNA	TCONS_00021004	NA	NA	NA	NA	XLOC_010265	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010265), lincRNA [TCONS_00021004]"	chr12:130820018-130819959	hs|12q24.33	Agilent_HUMAN_G3V2	TCONS_00021004	TCONS_00021004	chr12	130819959	130820018	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008206	6.5681505	P	7.0465465	P	0.717775208820217	0	lncRNA	TCONS_00022098	NA	NA	NA	NA	XLOC_010707	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010707), lincRNA [TCONS_00022098]"	chr13:100150655-100150596	hs|13q32.3	Agilent_HUMAN_G3V2	TCONS_00022098	TCONS_00022098	chr13	100150596	100150655	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1008_PI429285431	3.6585042	P	3.4681065	P	1.14107822742817	0	lncRNA	997-1_{1..319}	"transcript_id ""ENST00000443833.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000443833.1"" | genecode_v17"	chr2	107997648	107997966	+	ENSG00000225588.2	ENST00000443833.1	AC096669.1	AC096669.1-003	NA	NA	NA	inter
LNCA_21_P0003845	0.91647387	A	1.210239	A	0.815770289506686	0	lncRNA	TCONS_00008187	NA	NA	NA	NA	XLOC_003636	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003636), lincRNA [TCONS_00008187]"	chr4:107355806-107378165	hs|4q24	Agilent_HUMAN_G3V2	TCONS_00008187	TCONS_00008187	chr4	107355806	107378165	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007606	2.5580611	A	2.0872707	A	1.38586852698701	0	lncRNA	TCONS_00020518	NA	NA	NA	NA	XLOC_009836	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009836), lincRNA [TCONS_00020518]"	chr12:92977676-92977735	hs|12q22	Agilent_HUMAN_G3V2	TCONS_00020518	TCONS_00020518	chr12	 92977676	 92977735	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31276_PI429285431	0.99427915	A	1.024947	A	0.97896701088962	0	lncRNA	33065-1_{1..2484}	n337736|BC035225|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|118|NULL|-0.9529950|-0.2093651	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337736|BC035225|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|118|NULL|-0.9529950|-0.2093651	chr1	 18392150	 18394633	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_33835_PI429285431	1.0108527	A	1.9726036	A	0.513433416141842	0	lncRNA	35383-1_{1..1979}	n340622|AK093331|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3084|NULL|-0.9266430|-0.2524510	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340622|AK093331|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3084|NULL|-0.9266430|-0.2524510	chr5	132549378	132551356	+	NA	NA	NA	NA	FSTL4	"hg19_refFlat_FSTL4:range=chr5:132534787-1329396745'pad=0,hg19_refFlat_FSTL4:range=chr5:132534787-1329396745'pad=0 3'pad=0 strand=- repeatMasking=none,-98.00chr5:132539378-132571726"	NA	inner
LNCA_19_P00317046	0.9878949	A	1.0229732	A	0.975978789627878	0	lncRNA	ENST00000492522	NA	NA	NA	NA	XLOC_012227	NA	ENST00000492522	NA	NA	"BROAD Institute lincRNA (XLOC_012227), lincRNA [TCONS_00025176]"	chr17:46782865-46782924	hs|17q21.32	Agilent_HUMAN_G3V2	ENST00000492522	ENST00000492522	chr17	 46782865	 46782924	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00800229	5.1548376	P	4.597899	P	1.4711441337517	0	lncRNA	TCONS_00024662	NA	NA	NA	NA	XLOC_011950	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011950), lincRNA [TCONS_00024662]"	chr16:54952412-54952353	hs|16q12.2	Agilent_HUMAN_G3V2	TCONS_00024662	TCONS_00024662	chr16	 54952353	 54952412	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48862_PI429285431	5.47923	P	5.872804	P	0.761241437139966	0	lncRNA	52698-1_{1..803}	hg19_lincRNAsTranscripts_TCONS_l2_00018438 range=chr3:11912786-11926479 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00018438 range=chr3:11912786-11926479 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr3	 11912786	 11913588	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0000942	8.868552	P	9.006471	P	0.908829141157019	0	lncRNA	ENST00000420406	NA	NA	NA	NA	XLOC_000021	NA	ENST00000420406	NA	NA	"BROAD Institute lincRNA (XLOC_000021), lincRNA [TCONS_00000138]"	chr1:2362029-2362088	hs|1p36.32	Agilent_HUMAN_G3V2	ENST00000420406	ENST00000420406	chr1	  2362029	  2362088	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008460	4.865219	P	5.1881456	P	0.79944650275998	0	lncRNA	ENST00000557577	NA	NA	NA	NA	NUMB	numb homolog (Drosophila)	ENST00000557577	THC2625848	GO:0021849|GO:0021670|GO:0005886|GO:0050769|GO:0007411|GO:0005887|GO:0007275|GO:0007399	"BROAD Institute lincRNA (XLOC_011068), lincRNA [TCONS_00022790]"	chr14:73929235-73927912	hs|14q24.3	Agilent_HUMAN_G3V2	ENST00000557577	ENST00000557577	chr14	 73927912	 73929235	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004855	2.629029	A	2.8045971	A	0.885418792967465	0	lncRNA	TCONS_00011737	NA	NA	NA	NA	XLOC_005203	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005203), lincRNA [TCONS_00011737]"	chr6:23455383-23455442	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00011737	TCONS_00011737	chr6	 23455383	 23455442	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002421	0.9109123	A	0.91516507	A	0.997056544948189	0	lncRNA	TCONS_00004197	NA	NA	NA	NA	XLOC_002043	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002043), lincRNA [TCONS_00004197]"	chr2:31991012-31990953	hs|2p23.1	Agilent_HUMAN_G3V2	TCONS_00004197	TCONS_00004197	chr2	 31990953	 31991012	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19333_PI429285431	7.4621134	P	7.6686354	P	0.866623942454588	0	lncRNA	20999-1_{1..358}	lnc-RAB11FIP2-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RAB11FIP2-3:1	chr10	120069047	120069404	-	lnc-RAB11FIP2-3	lnc-RAB11FIP2-3:1	ENSG00000243540.1	RP11-319I23.3	FAM204A	NA	chr10:120068572-120079092	inner
CUST_20665_PI429285431	1.7415112	A	1.5262402	A	1.16092196483568	0	lncRNA	22304-1_{1..468}	lnc-TM4SF4-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TM4SF4-2:2	chr3	149375397	149375864	+	lnc-TM4SF4-2	lnc-TM4SF4-2:2	ENSG00000241313.2	WWTR1-AS1	WWTR1	"hg19_refFlat_WWTR1:range=chr3:149238592-1493750935'pad=0,hg19_refFlat_WWTR1:range=chr3:149238592-1493750935'pad=0 3'pad=0 strand=- repeatMasking=none,-108.90chr3:149365397-149385593"	NA	inner
CUST_31151_PI429285431	8.564575	P	8.647035	P	0.944445858591424	0	lncRNA	32946-1_{1..295}	n337480|EF103921|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394880|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394880|-0.9820220|-1.0000000	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337480|EF103921|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394880|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394880|-0.9820220|-1.0000000	chr22	 19948784	 19949078	+	NA	NA	NA	NA	COMT	NA	chr22:19938784-19957498	inner
LNCA_21_P0007582	1.690769	A	1.6849104	A	1.00406912858545	0	lncRNA	TCONS_00020472	NA	NA	NA	NA	XLOC_009805	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009805), lincRNA [TCONS_00020472]"	chr12:75380173-75380232	hs|12q21.1	Agilent_HUMAN_G3V2	TCONS_00020472	TCONS_00020472	chr12	 75380173	 75380232	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00319154	0.9033237	A	0.89692104	A	1.00444784817014	0	lncRNA	XR_109781	XR_109781	XR_109781	NA	Hs.695847	LOC100126447	uncharacterized LOC100126447	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100126447 (LOC100126447), miscRNA [XR_109781]"	chrX:115945120-115945061	hs|Xq23	Agilent_HUMAN_G3V2	XR_109781	XR_109781	chrX	115945061	115945120	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9231_PI429285431	2.384888	A	1.5624015	A	1.76845131184952	0	lncRNA	10741-1_{1..3000}	lnc-MNS1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MNS1-3:1	chr15	 57209738	 57212737	-	lnc-MNS1-3	lnc-MNS1-3:1	ENSG00000248500	ENSG00000259484.1	TCF12	NA	chr15:57210833-57220697	inter
LNCA_21_P0006361	0.903251	A	0.89337337	A	1.00687014328572	0	lncRNA	TCONS_00016660	NA	NA	NA	NA	XLOC_007486	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007486), lincRNA [TCONS_00016660]"	chr9:101679890-101679949	hs|9q22.33	Agilent_HUMAN_G3V2	TCONS_00016660	TCONS_00016660	chr9	101679890	101679949	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47287_PI429285431	12.292062	P	12.116184	P	1.12965168271568	0	lncRNA	51356-1_{1..1839}	"gi|386642898|ref|NR_047695.1| Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class T (PIGT), transcript variant 9, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|386642898|ref|NR_047695.1| Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class T (PIGT), transcript variant 9, non-coding RNA"	Chr20	 44044707	 44046545	+	51604	NR_047695.1	NA	NA	NA	NA	NA	inter
CUST_35857_PI429285431	3.8616214	P	4.124536	P	0.833402538770067	0	lncRNA	37252-2_{3001..3816}	n344523|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_71|NULL|-1.2887000|-0.2896918	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n344523|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_71|NULL|-1.2887000|-0.2896918	chr6	 14233100	 14233915	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0012383	0.9085731	A	0.88920736	A	1.01351380515036	0	lncRNA	TCONS_l2_00018699	NA	NA	NA	NA	XLOC_l2_009790	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009790), lincRNA [TCONS_l2_00018699]"	chr3:94891155-94891214	hs|3q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00018699	TCONS_l2_00018699	chr3	 94891155	 94891214	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011038	0.9160807	A	0.8936356	A	1.01567940975453	0	lncRNA	XR_109085	XR_109085	XR_109085	NA	NA	LOC100506226	uncharacterized LOC100506226	NA	THC2658854	NA	"PREDICTED: Homo sapiens hypothetical LOC100506226, transcript variant 2 (LOC100506226), miscRNA [XR_109085]"	chr12:10929960-10930019	hs|12p13.2	Agilent_HUMAN_G3V2	XR_109085	XR_109085	chr12	 10929960	 10930019	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013355	3.276861	P	3.8171484	P	0.687633911529529	0	lncRNA	TCONS_l2_00026968	NA	NA	NA	NA	XLOC_l2_014050	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014050), lincRNA [TCONS_l2_00026968]"	chr7:149588315-149584676	hs|7q36.1	Agilent_HUMAN_G3V2	TCONS_l2_00026968	TCONS_l2_00026968	chr7	149584676	149588315	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006085	0.9169701	A	0.8959978	A	1.01464306506752	0	lncRNA	ENST00000442086	NA	NA	NA	NA	XLOC_007768	NA	ENST00000442086	THC2642041	NA	"BROAD Institute lincRNA (XLOC_007768), lincRNA [TCONS_00015841]"	chr9:92503248-92503189	hs|9q22.2	Agilent_HUMAN_G3V2	ENST00000442086	ENST00000442086	chr9	 92503189	 92503248	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42270_PI429285431	9.933183	P	10.054496	P	0.919350566749127	0	lncRNA	44879-1_{1..128}	ENST00000408237 ncrna:snoRNA chromosome:GRCh37:10:74885838:74885965:-1 gene:ENSG00000221164 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408237 ncrna:snoRNA chromosome:GRCh37:10:74885838:74885965:-1 gene:ENSG00000221164 gene_biotype:snoRNA transcript_biotype:snoRNA	chr10	 74885838	 74885965	-	ENSG00000221164	ENST00000408237	NA	NA	NUDT13	NA	chr10:74875838-74891581	inner
LNCA_19_P00806193	0.914673	A	1.7136395	A	0.574760770054931	0	lncRNA	TCONS_00013374	NA	NA	NA	NA	XLOC_006009	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006009), lincRNA [TCONS_00013374]"	chr7:22611669-22611728	hs|7p15.3	Agilent_HUMAN_G3V2	TCONS_00013374	TCONS_00013374	chr7	 22611669	 22611728	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006475	3.3398843	P	3.0291038	A	1.24037856496163	0	lncRNA	TCONS_00017114	NA	NA	NA	NA	XLOC_007910	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007910), lincRNA [TCONS_00017114]"	chrX:420529-420588	hs|Xp22.33	Agilent_HUMAN_G3V2	TCONS_00017114	TCONS_00017114	chrX	   420529	   420588	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008823	1.1889575	A	2.1639662	A	0.508736778165761	0	lncRNA	TCONS_00023919	NA	NA	NA	NA	XLOC_011217	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011217), lincRNA [TCONS_00023919]"	chr15:39784868-39784927	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00023919	TCONS_00023919	chr15	 39784868	 39784927	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010412	1.3995198	A	1.002278	A	1.31698763462575	0	lncRNA	TCONS_00029584	NA	NA	NA	NA	XLOC_014218	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014218), lincRNA [TCONS_00029584]"	chr22:35034099-35034158	hs|22q12.3	Agilent_HUMAN_G3V2	TCONS_00029584	TCONS_00029584	chr22	 35034099	 35034158	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19682_PI429285431	4.925417	P	4.4179597	P	1.421542566944	0	lncRNA	21339-1_{1..552}	lnc-SLC19A1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ncbi,"	>lnc-SLC19A1-2:1	chr21	 46829863	 46830414	-	lnc-SLC19A1-2	lnc-SLC19A1-2:1	ENSG00000224574.1	COL18A1-AS2	COL18A1	NA	chr21:46825097-46839980	inner
LNCA_21_P0008062	6.4227333	P	6.3705397	P	1.03684022869031	0	lncRNA	TCONS_00021786	NA	NA	NA	NA	XLOC_010384	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010384), lincRNA [TCONS_00021786]"	chr13:47407300-47407359	hs|13q14.2	Agilent_HUMAN_G3V2	TCONS_00021786	TCONS_00021786	chr13	 47407300	 47407359	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15695_PI429285431	2.1376262	A	0.91539544	A	2.33307188608287	0	lncRNA	17382-1_{1..1563}	lnc-AC016251.1-8:12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-AC016251.1-8:12	chr15	 95870059	 95871621	-	lnc-AC016251.1-8	lnc-AC016251.1-8:12	XLOC_011592	linc-RGMA-7	NA	NA	NA	inter
LNCA_21_P0007404	0.9102534	A	0.9138552	A	0.997506536342835	0	lncRNA	TCONS_00019769	NA	NA	NA	NA	XLOC_009563	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009563), lincRNA [TCONS_00019769]"	chr11:115754919-115754860	hs|11q23.3	Agilent_HUMAN_G3V2	TCONS_00019769	TCONS_00019769	chr11	115754860	115754919	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010849	2.6473818	A	3.4215155	P	0.584739639483337	0	lncRNA	AK098032	NA	AK098032	NA	Hs.636644	XLOC_l2_001810	NA	NA	THC2492357	NA	"BROAD Institute lincRNA (XLOC_l2_001810), lincRNA [TCONS_l2_00003340]"	chr10:135464806-135464865	hs|10q26.3	Agilent_HUMAN_G3V2	AK098032	AK098032	chr10	135464806	135464865	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001022	0.90390015	A	0.8992767	A	1.00320987197341	0	lncRNA	ENST00000412932	NA	NA	NA	NA	XLOC_000430	NA	ENST00000412932	NA	NA	"BROAD Institute lincRNA (XLOC_000430), lincRNA [TCONS_00000319]"	chr1:159453037-159453096	hs|1q23.2	Agilent_HUMAN_G3V2	ENST00000412932	ENST00000412932	chr1	159453037	159453096	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003503	0.9033642	A	0.8956224	A	1.00538063071936	0	lncRNA	ENST00000503542	NA	NA	NA	NA	XLOC_004074	NA	ENST00000503542	NA	NA	"BROAD Institute lincRNA (XLOC_004074), lincRNA [TCONS_00007827]"	chr4:130220395-130220336	hs|4q28.2	Agilent_HUMAN_G3V2	ENST00000503542	ENST00000503542	chr4	130220336	130220395	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002415	4.9112644	P	5.5688343	P	0.633945226249012	0	lncRNA	TCONS_00004183	NA	NA	NA	NA	XLOC_002024	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002024), lincRNA [TCONS_00004183]"	chr2:23958444-23958385	hs|2p24.1	Agilent_HUMAN_G3V2	TCONS_00004183	TCONS_00004183	chr2	 23958385	 23958444	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012366	5.372832	P	5.758795	P	0.765268011064139	0	lncRNA	TCONS_l2_00018438	NA	NA	NA	NA	XLOC_l2_009623	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009623), lincRNA [TCONS_l2_00018438]"	chr3:11925567-11926470	hs|3p25.2	Agilent_HUMAN_G3V2	TCONS_l2_00018438	TCONS_l2_00018438	chr3	 11925567	 11926470	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49277_PI429285431	0.91333735	A	1.0439488	A	0.913444227821008	0	lncRNA	53096-1_{1..2058}	hg19_lincRNAsTranscripts_TCONS_l2_00022720 range=chr5:710470-733896 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00022720 range=chr5:710470-733896 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	   710470	   712527	-	NA	NA	NA	NA	ZDHHC11B	NA	chr5:732645-743896	inter
LNCA_21_P0012341	2.2606966	A	3.122459	P	0.550279923795454	0	lncRNA	AK292695	NA	AK292695	NA	NA	PI4KAP1	"phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 1"	NA	NA	GO:0046854|GO:0048015	"BROAD Institute lincRNA (XLOC_l2_009464), lincRNA [TCONS_l2_00018327]"	chr22:20387173-20386659	hs|22q11.21	Agilent_HUMAN_G3V2	AK292695	AK292695	chr22	 20386659	 20387173	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013692	0.90721834	A	0.8893723	A	1.01244675636549	0	lncRNA	ENST00000448570	NA	NA	NA	NA	XLOC_l2_014721	NA	ENST00000448570	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014721), lincRNA [TCONS_l2_00029687]"	chr9:22767204-22767263	hs|9p21.3	Agilent_HUMAN_G3V2	ENST00000448570	ENST00000448570	chr9	 22767204	 22767263	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014243	5.095578	P	5.110884	P	0.989446769492159	0	lncRNA	ENST00000438380	XR_108996	XR_108996	NA	NA	LOC100505607	NA	ENST00000438380	THC2628554	NA	"PREDICTED: Homo sapiens hypothetical LOC100505607 (LOC100505607), miscRNA [XR_108996]"	chr9:127534036-127535023	hs|9q33.3	Agilent_HUMAN_G3V2	ENST00000438380	ENST00000438380	chr9	127534036	127535023	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00320387	1.0758735	A	1.0176003	A	1.04121875233073	0	lncRNA	ENST00000450063	NA	NA	NA	NA	XLOC_l2_013972	NA	ENST00000450063	THC2656743	NA	"BROAD Institute lincRNA (XLOC_l2_013972), lincRNA [TCONS_l2_00026856]"	chr7:116211087-116211028	hs|7q31.2	Agilent_HUMAN_G3V2	ENST00000450063	ENST00000450063	chr7	116211028	116211087	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006080	0.9131172	A	0.8980682	A	1.01048576625657	0	lncRNA	TCONS_00015830	NA	NA	NA	NA	XLOC_007727	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007727), lincRNA [TCONS_00015830]"	chr9:72433959-72433900	hs|9q21.12	Agilent_HUMAN_G3V2	TCONS_00015830	TCONS_00015830	chr9	 72433900	 72433959	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26257_PI429285431	0.9428454	A	1.6059773	A	0.631505892154395	0	lncRNA	27764-1_{1..473}	lnc-IQCG-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IQCG-2:1	chr3	197557908	197558380	-	lnc-IQCG-2	lnc-IQCG-2:1	ENSG00000234136.1	AC055764.1	LRCH3	"hg19_refFlat_LRCH3:range=chr3:197518150-1975983425'pad=0,hg19_refFlat_LRCH3:range=chr3:197518150-1975983425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40chr3:197547908-197568167"	NA	inner
LNCA_21_P0012435	1.0041598	A	1.7959694	A	0.577619118658782	0	lncRNA	AK027155	NA	AK027155	NA	Hs.306905	XLOC_l2_010118	NA	NA	THC2495756	NA	"BROAD Institute lincRNA (XLOC_l2_010118), lincRNA [TCONS_l2_00019181]"	chr3:14392413-14392354	hs|3p25.1	Agilent_HUMAN_G3V2	AK027155	AK027155	chr3	 14392354	 14392413	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44326_PI429285431	5.5552464	P	3.854686	P	3.25027187481435	0	lncRNA	48957-2_{3001..4981}	"gi|410170473|ref|XR_171093.1| PREDICTED: Homo sapiens uncharacterized LOC101060069 (LOC101060069), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|410170473|ref|XR_171093.1| PREDICTED: Homo sapiens uncharacterized LOC101060069 (LOC101060069), misc_RNA"	NA	NA	NA	NA	NA	XR_171093.1	NA	NA	NA	"hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0,hg19_refFlat_SORBS1:range=chr10:97074816-972008925'pad=0 3'pad=0 strand=- repeatMasking=none,-30.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.70;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0,hg19_refFlat_TRIM54:range=chr2:27505600-275294095'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.30;hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0,hg19_refFlat_PTBP3:range=chr9:114982452-1150601455'pad=0 3'pad=0 strand=- repeatMasking=none,-71.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0,hg19_refFlat_CHFR:range=chr12:133418140-1334639145'pad=0 3'pad=0 strand=- repeatMasking=none,-41.90;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-43.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.90;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-24.50;hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27335955'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.10;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80"	NA	Unknown
LNCA_21_P0005840	2.6881952	A	2.9807448	A	0.816457899208192	0	lncRNA	ENST00000531654	XR_108912	XR_108912	NA	Hs.720321	XLOC_007093	NA	ENST00000531654	THC2518039	NA	"BROAD Institute lincRNA (XLOC_007093), lincRNA [TCONS_00015019]"	chr8:61317386-61317327	hs|8q12.1	Agilent_HUMAN_G3V2	ENST00000531654	ENST00000531654	chr8	 61317327	 61317386	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_10231_PI429285431	1.9311103	A	1.6742412	A	1.19488278467922	0	lncRNA	11755-1_{1..842}	lnc-GPBP1-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPBP1-2:4	chr5	 56912552	 56913393	+	lnc-GPBP1-2	lnc-GPBP1-2:4	XLOC_004397	linc-GAPT-2	NA	NA	NA	inter
LNCA_21_P0008899	0.94497406	A	1.8094878	A	0.549231494036654	0	lncRNA	TCONS_00024308	NA	NA	NA	NA	XLOC_011618	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011618), lincRNA [TCONS_00024308]"	chr16:434409-434468	hs|16p13.3	Agilent_HUMAN_G3V2	TCONS_00024308	TCONS_00024308	chr16	   434409	   434468	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33813_PI429285431	5.94243	P	5.809904	P	1.09621136723749	0	lncRNA	35362-2_{3001..3254}	n340599|AK128461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3061|NULL|-1.0608200|-0.3419625	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340599|AK128461|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3061|NULL|-1.0608200|-0.3419625	chr5	118680270	118680523	+	NA	NA	NA	NA	TNFAIP8	NA	chr5:118667270-118690524	inner
CUST_4667_PI429285431	1.1773093	A	1.4255655	A	0.841913429718735	0	lncRNA	4613-1_{1..888}	"transcript_id ""ENST00000424165.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000424165.1"" | genecode_v17"	chr13	 89193119	 89194006	+	ENSG00000229443.1	ENST00000424165.1	LINC00433	LINC00433-001	NA	NA	NA	inter
LNCA_21_P0010908	0.9172511	A	0.9261802	A	0.993829933034949	0	lncRNA	TCONS_l2_00003828	NA	NA	NA	NA	XLOC_l2_002160	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002160), lincRNA [TCONS_l2_00003828]"	chr10:131877852-131834198	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_l2_00003828	TCONS_l2_00003828	chr10	131834198	131877852	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45204_PI429285431	0.9116694	A	0.9115393	A	1.00009018251439	0	lncRNA	49667-2_{3001..3727}	"gi|336455052|ref|NR_038875.1| Homo sapiens uncharacterized LOC286184 (LOC286184), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|336455052|ref|NR_038875.1| Homo sapiens uncharacterized LOC286184 (LOC286184), non-coding RNA"	Chr8	 64684988	 64685714	+	286184	NR_038875.1	NA	NA	NA	"hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.10;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.00"	NA	inter
LNCA_21_P0008194	0.91226333	A	0.91738033	A	0.996459448463264	0	lncRNA	THC2672811	NA	NA	NA	NA	XLOC_010679	NA	NA	THC2672811	NA	"BROAD Institute lincRNA (XLOC_010679), lincRNA [TCONS_00022076]"	chr13:085686038-085685979	hs|13q31.1	Agilent_HUMAN_G3V2	THC2672811	THC2672811	chr13	 85685979	 85686038	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27553_PI429285431	7.859551	P	7.6035957	P	1.19412618807895	0	lncRNA	29133-1_{1..570}	n324744|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319041|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319041|-0.7557390|-0.3567575	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324744|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000319041|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000319041|-0.7557390|-0.3567575	chr22	 18706432	 18707001	+	NA	NA	NA	NA	LOC642643	NA	chr22:18703328-18729632	inter
LNCA_21_P0012859	0.9077974	A	0.90892005	A	0.999222141007027	0	lncRNA	TCONS_l2_00023571	NA	NA	NA	NA	XLOC_l2_011805	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011805), lincRNA [TCONS_l2_00023571]"	chr5:148486428-148486487	hs|5q32	Agilent_HUMAN_G3V2	TCONS_l2_00023571	TCONS_l2_00023571	chr5	148486428	148486487	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014207	3.1545608	P	1.6261439	A	2.88469122053629	0	lncRNA	XR_108853	XR_108853	XR_108853	NA	NA	LOC100506507	uncharacterized LOC100506507	NA	THC2645710	NA	"PREDICTED: Homo sapiens hypothetical LOC100506507 (LOC100506507), miscRNA [XR_108853]"	chr7:100944565-100944624	hs|7q22.1	Agilent_HUMAN_G3V2	XR_108853	XR_108853	chr7	100944565	100944624	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24283_PI429285431	1.6237253	A	0.8999376	A	1.65151228345721	0	lncRNA	25834-1_{1..351}	lnc-THUMPD1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-THUMPD1-1:1	chr16	 20777923	 20778273	-	lnc-THUMPD1-1	lnc-THUMPD1-1:1	ENSG00000260510.1	AC004381.7	ACSM3	NA	chr16:20775312-20787942	inner
LNCA_21_P0008435	4.9567356	P	5.4442925	P	0.713231882461151	0	lncRNA	TCONS_00022740	NA	NA	NA	NA	XLOC_011016	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011016), lincRNA [TCONS_00022740]"	chr14:50328939-50328880	hs|14q21.3	Agilent_HUMAN_G3V2	TCONS_00022740	TCONS_00022740	chr14	 50328880	 50328939	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014402	0.9035732	A	0.893638	A	1.00691032272009	0	lncRNA	XR_109616	XR_109616	XR_109616	NA	NA	LOC100505963	uncharacterized LOC100505963	NA	THC2613550	NA	"PREDICTED: Homo sapiens hypothetical LOC100505963 (LOC100505963), miscRNA [XR_109616]"	chr20:45983318-45983377	hs|20q13.12	Agilent_HUMAN_G3V2	XR_109616	XR_109616	chr20	 45983318	 45983377	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014632	0.909781	A	0.8896302	A	1.0140654710611	0	lncRNA	XR_110833	XR_110833	XR_110833	NA	NA	LOC100505987	uncharacterized LOC100505987	NA	THC2536807	NA	"PREDICTED: Homo sapiens hypothetical LOC100505987 (LOC100505987), miscRNA [XR_110833]"	chr1:145376879-145376820	hs|1q21.1	Agilent_HUMAN_G3V2	XR_110833	XR_110833	chr1	145376820	145376879	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8561_PI429285431	0.92126614	A	0.9002948	A	1.01464238990264	0	lncRNA	10120-1_{1..1628}	lnc-FAM114A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM114A1-1:1	chr4	 38829947	 38831574	+	lnc-FAM114A1-1	lnc-FAM114A1-1:1	ENSG00000248412	ENST00000508542	TLR6	"hg19_refFlat_TLR1:range=chr4:38798092-388004525'pad=0,hg19_refFlat_TLR1:range=chr4:38798092-388004525'pad=0 3'pad=0 strand=- repeatMasking=none,-72.80;hg19_refFlat_TLR6:range=chr4:38828704-388310945'pad=0,hg19_refFlat_TLR6:range=chr4:38828704-388310945'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10chr4:38825325-38841120"	NA	inner
LNCA_21_P0005000	1.3746195	A	1.745466	A	0.773328613767379	0	lncRNA	TCONS_00012085	NA	NA	NA	NA	XLOC_005613	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005613), lincRNA [TCONS_00012085]"	chr6:14231414-14230389	hs|6p23	Agilent_HUMAN_G3V2	TCONS_00012085	TCONS_00012085	chr6	 14230389	 14231414	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004285	0.9124715	A	1.5599915	A	0.638376743824655	0	lncRNA	TCONS_00010061	NA	NA	NA	NA	XLOC_004514	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004514), lincRNA [TCONS_00010061]"	chr5:115044628-115044687	hs|5q22.3	Agilent_HUMAN_G3V2	TCONS_00010061	TCONS_00010061	chr5	115044628	115044687	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006460	0.9079186	A	0.89749736	A	1.00724960519295	0	lncRNA	XR_113296	XR_113296	XR_113296	NA	NA	LOC100506992	uncharacterized LOC100506992	ENST00000455986	THC2538606	NA	"PREDICTED: Homo sapiens hypothetical LOC100506992 (LOC100506992), miscRNA [XR_113296]"	chrX:119055287-119055228	hs|Xq24	Agilent_HUMAN_G3V2	XR_113296	XR_113296	chrX	119055228	119055287	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003564	0.9804906	A	1.021568	A	0.971928842996925	0	lncRNA	TCONS_00007969	NA	NA	NA	NA	XLOC_003438	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003438), lincRNA [TCONS_00007969]"	chr4:6319601-6319660	hs|4p16.1	Agilent_HUMAN_G3V2	TCONS_00007969	TCONS_00007969	chr4	  6319601	  6319660	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002512	0.9306757	A	2.3328862	A	0.378348990266564	0	lncRNA	TCONS_00004472	NA	NA	NA	NA	XLOC_002352	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002352), lincRNA [TCONS_00004472]"	chr2:150660077-150660018	hs|2q23.3	Agilent_HUMAN_G3V2	TCONS_00004472	TCONS_00004472	chr2	150660018	150660077	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00322152	3.1799297	P	2.2184434	A	1.94731503373322	0	lncRNA	ENST00000423530	NA	AK091865	NA	NA	XLOC_l2_008434	NA	ENST00000423530	THC2500082	NA	"BROAD Institute lincRNA (XLOC_l2_008434), lincRNA [TCONS_l2_00016080]"	chr2:216484484-216484425	hs|2q35	Agilent_HUMAN_G3V2	ENST00000423530	ENST00000423530	chr2	216484425	216484484	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014624	3.397923	P	3.2373686	P	1.11771657257044	0	lncRNA	XR_110599	XR_110599	XR_110599	NA	Hs.667183	LOC100505661	uncharacterized LOC100505661	NA	THC2606507	NA	"PREDICTED: Homo sapiens hypothetical LOC100505661 (LOC100505661), miscRNA [XR_110599]"	chr15:83781562-83781503	hs|15q25.2	Agilent_HUMAN_G3V2	XR_110599	XR_110599	chr15	 83781503	 83781562	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003641	4.290228	P	3.8679307	P	1.34005972364384	0	lncRNA	ENST00000419264	NA	NA	NA	NA	XLOC_003658	NA	ENST00000419264	THC2673994	NA	"BROAD Institute lincRNA (XLOC_003658), lincRNA [TCONS_00008204]"	chr4:118293624-118293807	hs|4q26	Agilent_HUMAN_G3V2	ENST00000419264	ENST00000419264	chr4	118293624	118293807	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39059_PI429285431	1.0349452	A	0.97296184	A	1.04389988704326	0	lncRNA	40035-1_{1..2096}	n385513|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aan.1||-0.3770680|-0.2985219	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n385513|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc004aan.1||-0.3770680|-0.2985219	chr9	 37789212	 37791307	-	NA	NA	NA	NA	EXOSC3	"hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-45.62;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.80;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.80;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.60;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-73.00chr9:37780308-37785067"	NA	inter
CUST_19311_PI429285431	0.92506695	A	0.93124336	A	0.995727989929253	0	lncRNA	20977-1_{1..523}	lnc-LRRC40-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-LRRC40-2:1	chr1	 70496815	 70497337	-	lnc-LRRC40-2	lnc-LRRC40-2:1	ENSG00000237919.1	RP11-181B18.1	LRRC7	NA	chr1:70486815-70506905	inner
LNCA_21_P0005602	0.9040806	A	2.661728	A	0.295730018738868	0	lncRNA	TCONS_00014308	NA	NA	NA	NA	XLOC_006459	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006459), lincRNA [TCONS_00014308]"	chr7:56685160-56685101	hs|7p11.2	Agilent_HUMAN_G3V2	TCONS_00014308	TCONS_00014308	chr7	 56685101	 56685160	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006525	0.9039642	A	0.8982532	A	1.0039664090097	0	lncRNA	AY660579	NA	AY660579	NA	Hs.460482	XLOC_008111	NA	NA	THC2747891	NA	"BROAD Institute lincRNA (XLOC_008111), lincRNA [TCONS_00017290]"	chrX:10866893-10866834	hs|Xp22.2	Agilent_HUMAN_G3V2	AY660579	AY660579	chrX	 10866834	 10866893	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003413	0.90376806	A	1.4007627	A	0.708581330819391	0	lncRNA	ENST00000513711	XR_109845	XR_109845	NA	Hs.615641	XLOC_003726	NA	ENST00000513711	THC2713418	NA	"PREDICTED: Homo sapiens hypothetical LOC100505596 (LOC100505596), miscRNA [XR_109845]"	chr4:147896407-147896466	hs|4q31.22	Agilent_HUMAN_G3V2	ENST00000513711	ENST00000513711	chr4	147896407	147896466	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013726	6.0766363	P	6.370046	P	0.815971291759711	0	lncRNA	XR_132891	XR_132891	XR_132891	NA	NA	FLJ20444	uncharacterized protein FLJ20444	NA	THC2550618	NA	"PREDICTED: Homo sapiens hypothetical protein FLJ20444 (FLJ20444), miscRNA [XR_132891]"	chr9:66524045-66523986	hs|9q13	Agilent_HUMAN_G3V2	XR_132891	XR_132891	chr9	 66523986	 66524045	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25393_PI429285431	0.9203696	A	0.90111196	A	1.01343786620646	0	lncRNA	26924-1_{1..400}	lnc-JMJD7-PLA2G4B-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-JMJD7-PLA2G4B-1:4	chr15	 42187980	 42188379	+	lnc-JMJD7-PLA2G4B-1	lnc-JMJD7-PLA2G4B-1:4	ENSG00000174171.3	RP11-23P13.6	EHD4	NA	chr15:42191638-42198141	inter
CUST_2210_PI429285431	2.3606327	A	2.098716	A	1.19907067845841	0	lncRNA	2202-1_{1..493}	"transcript_id ""ENST00000513755.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000513755.1"" | genecode_v17"	chr5	 77638189	 77638681	-	ENSG00000245556.2	ENST00000513755.1	CTD-2037K23.2	CTD-2037K23.2-002	SCAMP1	NA	chr5:77656339-77666217	inter
LNCA_21_P0004289	4.880245	P	4.978445	P	0.934197830587531	0	lncRNA	TCONS_00010078	NA	NA	NA	NA	XLOC_004536	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004536), lincRNA [TCONS_00010078]"	chr5:124310981-124311040	hs|5q23.2	Agilent_HUMAN_G3V2	TCONS_00010078	TCONS_00010078	chr5	124310981	124311040	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009167	1.0050899	A	1.2525116	A	0.84240055968908	0	lncRNA	TCONS_00025171	NA	NA	NA	NA	XLOC_012193	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012193), lincRNA [TCONS_00025171]"	chr17:37919992-37920051	hs|17q12	Agilent_HUMAN_G3V2	TCONS_00025171	TCONS_00025171	chr17	 37919992	 37920051	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010760	1.0035415	A	1.3809466	A	0.769820982831218	0	lncRNA	ENST00000458145	XR_110514	XR_110514	NA	Hs.98895	XLOC_l2_000920	NA	ENST00000458145	THC2667582	NA	"PREDICTED: Homo sapiens hypothetical LOC100507652 (LOC100507652), miscRNA [XR_110514]"	chr1:56381344-56381285	hs|1p32.2	Agilent_HUMAN_G3V2	ENST00000458145	ENST00000458145	chr1	 56381285	 56381344	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005437	0.9902761	A	1.0245705	A	0.976509239683206	0	lncRNA	TCONS_00013610	NA	NA	NA	NA	XLOC_006276	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006276), lincRNA [TCONS_00013610]"	chr7:139783129-139783188	hs|7q34	Agilent_HUMAN_G3V2	TCONS_00013610	TCONS_00013610	chr7	139783129	139783188	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32897_PI429285431	3.8018625	P	1.5065743	A	4.90852036173753	0	lncRNA	34523-2_{3001..5298}	n339566|D87448|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2008|NULL|14.6602000|-0.3807615	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339566|D87448|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2008|NULL|14.6602000|-0.3807615	chr3	133322449	133324746	-	NA	NA	NA	NA	TOPBP1	NA	chr3:133319449-133380737	inner
CUST_27065_PI429285431	7.0810633	P	7.613016	P	0.691617989425482	0	lncRNA	28598-1_{1..292}	n324175|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327100|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327100|-1.0754500|-0.5103495	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324175|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000327100|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000327100|-1.0754500|-0.5103495	chr7	156998748	156999039	+	NA	NA	NA	NA	UBE3C	NA	chr7:156988748-157012296	inner
LNCA_21_P0008214	6.5151024	P	6.4214334	P	1.06708048784458	0	lncRNA	THC2669116	NA	NA	NA	NA	XLOC_010719	NA	NA	THC2669116	NA	"BROAD Institute lincRNA (XLOC_010719), lincRNA [TCONS_00022112]"	chr13:110689273-110689214	hs|13q34	Agilent_HUMAN_G3V2	THC2669116	THC2669116	chr13	110689214	110689273	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51978_PI429285431	0.9235982	A	0.92029905	A	1.00228941323416	0	lncRNA	55517-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00016362 range=chr20:58658544-58676498 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016362 range=chr20:58658544-58676498 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 58658544	 58661543	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0008583	0.9220692	A	0.9461503	A	0.983446788762139	0	lncRNA	TCONS_00023298	NA	NA	NA	NA	XLOC_011167	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011167), lincRNA [TCONS_00023298]"	chr15:23662523-23662582	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023298	TCONS_00023298	chr15	 23662523	 23662582	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003099	0.916117	A	0.92411494	A	0.994471588661467	0	lncRNA	TCONS_00006403	NA	NA	NA	NA	XLOC_003027	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003027), lincRNA [TCONS_00006403]"	chr3:5732569-5732510	hs|3p26.1	Agilent_HUMAN_G3V2	TCONS_00006403	TCONS_00006403	chr3	  5732510	  5732569	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005169	3.8032923	P	4.6147156	P	0.569819421555255	0	lncRNA	TCONS_00012742	NA	NA	NA	NA	XLOC_005739	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005739), lincRNA [TCONS_00012742]"	chr6:49646478-49646419	hs|6p12.3	Agilent_HUMAN_G3V2	TCONS_00012742	TCONS_00012742	chr6	 49646419	 49646478	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44884_PI429285431	5.9553294	P	3.403934	A	5.86200988166915	0	lncRNA	49407-2_{3001..3326}	"gi|289063410|ref|NR_033328.1| Homo sapiens kelch-like 7 (Drosophila) (KLHL7), transcript variant 4, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|289063410|ref|NR_033328.1| Homo sapiens kelch-like 7 (Drosophila) (KLHL7), transcript variant 4, non-coding RNA"	Chr7	 23148353	 23148678	+	55975	NR_033328.1	NA	NA	NA	NA	NA	inter
CUST_47546_PI429285431	7.0856338	P	8.57849	P	0.355308424242873	0	lncRNA	51555-1_{1..2103}	"gi|254039598|ref|NR_028057.1| Homo sapiens phosphatidylinositol-specific phospholipase C, X domain containing 1 (PLCXD1), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254039598|ref|NR_028057.1| Homo sapiens phosphatidylinositol-specific phospholipase C, X domain containing 1 (PLCXD1), transcript variant 2, non-coding RNA"	ChrY	   142991	   145093	+	55344	NR_028057.1	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0,hg19_refFlat_PCCB:range=chr3:135969218-1360488685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-85.30;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40"	NA	inter
LNCA_21_P0010957	6.7286253	P	6.6850758	P	1.03064643599449	0	lncRNA	AK094118	NA	AK094118	NA	Hs.127394	LOC387723	uncharacterized LOC387723	NA	THC2514554	NA	"BROAD Institute lincRNA (XLOC_l2_002160), lincRNA [TCONS_l2_00004298]"	chr10:131864816-131864757	hs|10q26.3	Agilent_HUMAN_G3V2	AK094118	AK094118	chr10	131864757	131864816	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005905	0.9179641	A	0.89568615	A	1.01556174041061	0	lncRNA	TCONS_00015169	NA	NA	NA	NA	XLOC_007215	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007215), lincRNA [TCONS_00015169]"	chr8:128186497-128186438	hs|8q24.21	Agilent_HUMAN_G3V2	TCONS_00015169	TCONS_00015169	chr8	128186438	128186497	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52213_PI429285431	1.3815229	A	0.9296562	A	1.36780891728089	0	lncRNA	55729-1_{1..395}	hg19_lincRNAsTranscripts_TCONS_l2_00031106 range=chr6_dbb_hap3:3776252-3777348 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00031106 range=chr6_dbb_hap3:3776252-3777348 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr6_dbb_hap3	  3776252	  3776646	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014458	1.004114	A	1.0048298	A	0.99950396831257	0	lncRNA	XR_109925	XR_109925	XR_109925	NA	Hs.673671	LOC100506262	uncharacterized LOC100506262	NA	THC2604825	NA	"PREDICTED: Homo sapiens hypothetical LOC100506262 (LOC100506262), miscRNA [XR_109925]"	chr2:101628477-101628536	hs|2q11.2	Agilent_HUMAN_G3V2	XR_109925	XR_109925	chr2	101628477	101628536	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012546	1.0055649	A	1.0168769	A	0.992189778615316	0	lncRNA	ENST00000463799	NA	AK092228	NA	Hs.591320	XLOC_l2_010270	NA	ENST00000463799	THC2624181	NA	"BROAD Institute lincRNA (XLOC_l2_010270), lincRNA [TCONS_l2_00020152]"	chr3:95401506-95401447	hs|3q11.2	Agilent_HUMAN_G3V2	ENST00000463799	ENST00000463799	chr3	 95401447	 95401506	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008340	1.0036775	A	1.0236187	A	0.986272901252312	0	lncRNA	TCONS_00022516	NA	NA	NA	NA	XLOC_010840	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010840), lincRNA [TCONS_00022516]"	chr14:56893082-56893141	hs|14q22.3	Agilent_HUMAN_G3V2	TCONS_00022516	TCONS_00022516	chr14	 56893082	 56893141	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13820_PI429285431	3.2003207	P	3.163226	P	1.02604549381795	0	lncRNA	15463-1_{1..290}	lnc-ZNF516-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF516-3:1	chr18	 73963093	 73963382	-	lnc-ZNF516-3	lnc-ZNF516-3:1	XLOC_012892	linc-C18orf62-4	NA	NA	NA	inter
CUST_34186_PI429285431	8.197488	P	8.225143	P	0.981013571383634	0	lncRNA	35702-1_{1..3000}	n341036|AK055468|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3502|NULL|-0.3182690|-0.3391661	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341036|AK055468|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3502|NULL|-0.3182690|-0.3391661	chr11	 59570201	 59573200	+	NA	NA	NA	NA	STX3	"hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-29.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.70;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0,hg19_refFlat_C16orf89:range=chr16:5094584-51159095'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.80;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-81.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.50;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-68.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.80;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.00;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-43.10;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.90;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-34.40;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30chr11:59560201-59573355"	NA	inner
LNCA_21_P0011312	4.4588017	P	4.735871	P	0.825265765837276	0	lncRNA	TCONS_l2_00008541	NA	NA	NA	NA	XLOC_l2_004611	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004611), lincRNA [TCONS_l2_00008541]"	chr15:32887417-32887476	hs|15q13.3	Agilent_HUMAN_G3V2	TCONS_l2_00008541	TCONS_l2_00008541	chr15	 32887417	 32887476	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013052	3.212318	P	3.4244392	P	0.863267032949509	0	lncRNA	TCONS_l2_00024548	NA	NA	NA	NA	XLOC_l2_012836	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012836), lincRNA [TCONS_l2_00024548]"	chrUn_gl000227:73270-70542	NA	Agilent_HUMAN_G3V2	TCONS_l2_00024548	TCONS_l2_00024548	chrUn_gl000227	    70542	    73270	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21152_PI429285431	7.4441423	P	7.702773	P	0.835880899707441	0	lncRNA	22775-1_{1..562}	lnc-VMO1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-VMO1-2:1	chr17	  4710044	  4710605	-	lnc-VMO1-2	lnc-VMO1-2:1	ENSG00000262165.1	RP11-81A22.5	PLD2	NA	chr17:4710421-4720308	inter
CUST_7831_PI429285431	6.9026427	P	6.8981905	P	1.00309079656961	0	lncRNA	9455-1_{1..1492}	lnc-TCEANC2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TCEANC2-1:1	chr1	 54517248	 54518739	+	lnc-TCEANC2-1	lnc-TCEANC2-1:1	ENSG00000248303	ENST00000509052	TCEANC2	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.80;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.20chr1:54519274-54528429"	NA	inner
CUST_43840_PI429285431	3.8856769	P	3.872451	P	1.00920964548579	0	lncRNA	48564-1_{1..1013}	"gi|310118926|ref|XR_109987.1| PREDICTED: Homo sapiens uncharacterized LOC100506235, transcript variant 2 (LOC100506235), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310118926|ref|XR_109987.1| PREDICTED: Homo sapiens uncharacterized LOC100506235, transcript variant 2 (LOC100506235), misc_RNA"	Chr2	 48133850	 48134862	+	100506235	XR_109987.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0002443	0.9746502	A	1.019666	A	0.969279201597234	0	lncRNA	TCONS_00004264	NA	NA	NA	NA	XLOC_002105	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002105), lincRNA [TCONS_00004264]"	chr2:60567376-60567317	hs|2p16.1	Agilent_HUMAN_G3V2	TCONS_00004264	TCONS_00004264	chr2	 60567317	 60567376	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010086	3.461164	P	3.5224242	P	0.958426564063393	0	lncRNA	TCONS_00028516	NA	NA	NA	NA	XLOC_013486	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013486), lincRNA [TCONS_00028516]"	chr20:22666505-22671141	hs|20p11.21	Agilent_HUMAN_G3V2	TCONS_00028516	TCONS_00028516	chr20	 22666505	 22671141	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8466_PI429285431	0.92916703	A	0.92754173	A	1.00112720693329	0	lncRNA	10033-1_{1..1625}	lnc-SMG6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SMG6-1:1	chr17	  2209980	  2211604	-	lnc-SMG6-1	lnc-SMG6-1:1	ENSG00000248963	ENST00000514273	SMG6	"hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_HNRNPA1:range=chr12:54674592-546780975'pad=0,hg19_refFlat_HNRNPA1:range=chr12:54674592-546780975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.20;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-62.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-32.40;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-39.60;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-21.90;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_HNRNPA1L2:range=chr13:53216628-532175905'pad=0,hg19_refFlat_HNRNPA1L2:range=chr13:53216628-532175905'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-42.80;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-66.20;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.60chr17:2199980-2207069"	NA	inner
LNCA_21_P0013515	0.95585644	A	1.936121	A	0.506886778971924	0	lncRNA	TCONS_l2_00028190	NA	NA	NA	NA	XLOC_l2_014507	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014507), lincRNA [TCONS_l2_00028190]"	chr8:48012663-48012604	hs|8q11.1	Agilent_HUMAN_G3V2	TCONS_l2_00028190	TCONS_l2_00028190	chr8	 48012604	 48012663	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24256_PI429285431	0.98719776	A	1.0136341	A	0.981842594179406	0	lncRNA	25807-1_{1..505}	lnc-PRM1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-PRM1-1:2	chr16	 11438970	 11439474	-	lnc-PRM1-1	lnc-PRM1-1:2	ENSG00000263080.1	RP11-485G7.5	RMI2	"hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40chr16:11439311-11445617"	NA	inter
LNCA_21_P0008055	0.9269035	A	0.97920984	A	0.964393384796797	0	lncRNA	TCONS_00021765	NA	NA	NA	NA	XLOC_010360	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010360), lincRNA [TCONS_00021765]"	chr13:41873639-41873698	hs|13q14.11	Agilent_HUMAN_G3V2	TCONS_00021765	TCONS_00021765	chr13	 41873639	 41873698	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003434	1.0917044	A	2.5085526	A	0.37452963944491	0	lncRNA	TCONS_00007688	NA	NA	NA	NA	XLOC_003808	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003808), lincRNA [TCONS_00007688]"	chr4:185436749-185436808	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_00007688	TCONS_00007688	chr4	185436749	185436808	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001655	4.487227	P	4.2657795	P	1.16590278569979	0	lncRNA	TCONS_00001909	NA	NA	NA	NA	XLOC_000008	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000008), lincRNA [TCONS_00001909]"	chr1:757203-757262	hs|1p36.33	Agilent_HUMAN_G3V2	TCONS_00001909	TCONS_00001909	chr1	   757203	   757262	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006195	6.3368716	P	6.175683	P	1.1182080220157	0	lncRNA	TCONS_00016107	NA	NA	NA	NA	XLOC_007494	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007494), lincRNA [TCONS_00016107]"	chr9:105000336-105000395	hs|9q31.1	Agilent_HUMAN_G3V2	TCONS_00016107	TCONS_00016107	chr9	105000336	105000395	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013323	2.0387537	A	1.2721769	A	1.70122834768108	0	lncRNA	TCONS_l2_00026655	NA	NA	NA	NA	XLOC_l2_013873	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013873), lincRNA [TCONS_l2_00026655]"	chr7:65956040-65955058	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00026655	TCONS_l2_00026655	chr7	 65955058	 65956040	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014876	11.41643	P	11.274652	P	1.10326395818434	0	lncRNA	XR_132783	XR_132783	XR_132783	NA	NA	LOC100652948	uncharacterized LOC100652948	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652948 (LOC100652948), miscRNA [XR_132783]"	chr10:120355077-120355136	hs|10q26.11	Agilent_HUMAN_G3V2	XR_132783	XR_132783	chr10	120355077	120355136	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008609	0.9059964	A	2.1468024	A	0.423136193832663	0	lncRNA	TCONS_00023348	NA	NA	NA	NA	XLOC_011210	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011210), lincRNA [TCONS_00023348]"	chr15:36475106-36475165	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00023348	TCONS_00023348	chr15	 36475106	 36475165	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006322	0.9062804	A	0.89088416	A	1.01072900775767	0	lncRNA	TCONS_00016481	NA	NA	NA	NA	XLOC_007860	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007860), lincRNA [TCONS_00016481]"	chr9:131097725-131097666	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_00016481	TCONS_00016481	chr9	131097666	131097725	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42402_PI429285431	0.9204024	A	0.8986473	A	1.01519375533087	0	lncRNA	45098-1_{1..127}	ENST00000516207 ncrna:snoRNA chromosome:GRCh37:X:87403793:87403919:1 gene:ENSG00000252016 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516207 ncrna:snoRNA chromosome:GRCh37:X:87403793:87403919:1 gene:ENSG00000252016 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	 87403793	 87403919	+	ENSG00000252016	ENST00000516207	NA	NA	NA	NA	NA	inter
LNCA_21_P0010804	2.2890408	A	2.3718455	A	0.944220231144326	0	lncRNA	ENST00000420049	NA	NA	NA	NA	XLOC_l2_001462	NA	ENST00000420049	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001462), lincRNA [TCONS_l2_00002879]"	chr10:7139567-7139626	hs|10p14	Agilent_HUMAN_G3V2	ENST00000420049	ENST00000420049	chr10	  7139567	  7139626	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012635	5.3564034	P	5.3226767	P	1.02365296418569	0	lncRNA	TCONS_l2_00020892	NA	NA	NA	NA	XLOC_l2_010947	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010947), lincRNA [TCONS_l2_00020892]"	chr4:174818394-174818453	hs|4q34.1	Agilent_HUMAN_G3V2	TCONS_l2_00020892	TCONS_l2_00020892	chr4	174818394	174818453	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012982	4.1059175	P	4.3725038	P	0.831284202311275	0	lncRNA	ENST00000510758	NA	NA	NA	NA	XLOC_l2_012021	NA	ENST00000510758	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012021), lincRNA [TCONS_l2_00023725]"	chr5:44510155-44510096	hs|5p12	Agilent_HUMAN_G3V2	ENST00000510758	ENST00000510758	chr5	 44510096	 44510155	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37828_PI429285431	3.697019	P	3.7279942	P	0.978758475160028	0	lncRNA	38920-2_{3001..4859}	n346349|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1899|NULL|-1.3463700|-0.2230547	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n346349|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1899|NULL|-1.3463700|-0.2230547	chr2	 91805597	 91807455	-	NA	NA	NA	NA	LOC100506191	"hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.00;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-76.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.80;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0,hg19_refFlat_CASC5:range=chr15:40895130-409543865'pad=0 3'pad=0 strand=+ repeatMasking=none,-34.50;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-87.90;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-47.50;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18189095-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0,hg19_refFlat_BEND2:range=chrX:18183129-182388705'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.40;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.50;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-43.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0,hg19_refFlat_SRP9:range=chr1:225965643-2259746715'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-44.00;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30chr2:91832852-91835376"	NA	inter
CUST_2481_PI429285431	0.92552876	A	0.9080805	A	1.01216764293963	0	lncRNA	2473-1_{1..554}	"transcript_id ""ENST00000412132.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000412132.1"" | genecode_v17"	chr6	 11810835	 11811388	+	ENSG00000234427.1	ENST00000412132.1	RP3-413H6.2	RP3-413H6.2-001	NA	NA	NA	inter
LNCA_21_P0006153	0.9103677	A	0.89864093	A	1.00816150251335	0	lncRNA	TCONS_00016012	NA	NA	NA	NA	XLOC_007402	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007402), lincRNA [TCONS_00016012]"	chr9:76040572-76040631	hs|9q21.13	Agilent_HUMAN_G3V2	TCONS_00016012	TCONS_00016012	chr9	 76040572	 76040631	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5537_PI429285431	1.0080787	A	1.11543	A	0.928290783560123	0	lncRNA	5467-1_{1..2248}	"transcript_id ""ENST00000576842.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000576842.1"" | genecode_v17"	chr16	 50914120	 50916367	+	ENSG00000263082.1	ENST00000576842.1	CTD-2034I21.2	CTD-2034I21.2-001	NA	NA	NA	inter
CUST_22438_PI429285431	0.9896728	A	1.1008441	A	0.925836085823517	0	lncRNA	24026-1_{1..1115}	lnc-ACYP2-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACYP2-1:2	chr2	 54292597	 54293711	+	lnc-ACYP2-1	lnc-ACYP2-1:2	ENSG00000239235.3	AC008280.5	ACYP2	NA	chr2:54282597-54303184	inter
LNCA_21_P0003962	0.9926971	A	1.0259142	A	0.977238698264574	0	lncRNA	ENST00000512746	NA	NA	NA	NA	XLOC_004278	NA	ENST00000512746	NA	NA	"BROAD Institute lincRNA (XLOC_004278), lincRNA [TCONS_00009342]"	chr5:7326194-7326253	hs|5p15.31	Agilent_HUMAN_G3V2	ENST00000512746	ENST00000512746	chr5	  7326194	  7326253	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12610_PI429285431	1.9537026	A	2.522361	A	0.67424349372155	0	lncRNA	14223-1_{1..254}	lnc-GRID1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GRID1-1:1	chr10	 87340164	 87340417	-	lnc-GRID1-1	lnc-GRID1-1:1	XLOC_008882	linc-LRIT1-1	NA	NA	NA	inter
LNCA_21_P0013670	6.6358542	P	6.882377	P	0.842925597757065	0	lncRNA	TCONS_l2_00029480	NA	NA	NA	NA	XLOC_l2_015295	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015295), lincRNA [TCONS_l2_00029480]"	chr9:98173782-98159551	hs|9q22.32	Agilent_HUMAN_G3V2	TCONS_l2_00029480	TCONS_l2_00029480	chr9	 98159551	 98173782	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40182_PI429285431	3.496235	P	3.7133074	P	0.860309455882372	0	lncRNA	41016-1_{1..2807}	n407963|NR_027678|lncRNA|Homosapiens||RefGeneNoncode|NR_027678||3.4680400|-0.2061928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n407963|NR_027678|lncRNA|Homosapiens||RefGeneNoncode|NR_027678||3.4680400|-0.2061928	chr17	  5322960	  5325766	+	NA	NA	NA	NA	RPAIN	NA	chr17:5322961-5336340	inter
LNCA_21_P0002982	3.7452872	P	3.293755	P	1.36749181697016	0	lncRNA	THC2690346	NA	NA	NA	NA	XLOC_002716	NA	NA	THC2690346	NA	"BROAD Institute lincRNA (XLOC_002716), lincRNA [TCONS_00006103]"	NA	NA	Agilent_HUMAN_G3V2	THC2690346	THC2690346	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41722_PI429285431	0.9250176	A	0.9701551	A	0.969197440517962	0	lncRNA	43243-1_{1..83}	ENST00000584480 ncrna:miRNA chromosome:GRCh37:8:101394991:101395073:1 gene:ENSG00000265599 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584480 ncrna:miRNA chromosome:GRCh37:8:101394991:101395073:1 gene:ENSG00000265599 gene_biotype:miRNA transcript_biotype:miRNA	chr8	101394991	101395073	+	ENSG00000265599	ENST00000584480	NA	NA	NA	NA	NA	inter
LNCA_21_P0011748	0.91375875	A	0.9196007	A	0.995958856314986	0	lncRNA	TCONS_l2_00013122	NA	NA	NA	NA	XLOC_l2_007058	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007058), lincRNA [TCONS_l2_00013122]"	chr19:43130702-43130643	hs|19q13.2	Agilent_HUMAN_G3V2	TCONS_l2_00013122	TCONS_l2_00013122	chr19	 43130643	 43130702	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010432	1.8931093	A	0.9146426	A	1.97037018128088	0	lncRNA	THC2624567	NA	NA	NA	NA	XLOC_014323	NA	NA	THC2624567	NA	"BROAD Institute lincRNA (XLOC_014323), lincRNA [TCONS_00029882]"	chr22:025957075-025957016	hs|22q12.1	Agilent_HUMAN_G3V2	THC2624567	THC2624567	chr22	 25957016	 25957075	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52029_PI429285431	1.0999808	A	1.1090145	A	0.993757879801508	0	lncRNA	55559-1_{1..1719}	hg19_lincRNAsTranscripts_TCONS_l2_00016980 range=chr21:17999131-18012978 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016980 range=chr21:17999131-18012978 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr21	 17999131	 18000849	+	NA	NA	NA	NA	NA	"hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-66.40;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-43.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-41.96;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-65.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.10;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50"	NA	inter
CUST_4530_PI429285431	0.90946436	A	0.90872186	A	1.00051479424266	0	lncRNA	4478-1_{1..568}	"transcript_id ""ENST00000535370.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000535370.1"" | genecode_v17"	chr12	131515115	131515682	-	ENSG00000256810.1	ENST00000535370.1	RP11-76C10.2	RP11-76C10.2-001	GPR133	NA	chr12:131505115-131530032	inner
LNCA_21_P0009265	5.3051043	P	5.764973	P	0.727052424853842	0	lncRNA	XR_109421	XR_109421	XR_109421	NA	NA	LOC100507002	uncharacterized LOC100507002	NA	THC2644838	NA	"PREDICTED: Homo sapiens hypothetical LOC100507002 (LOC100507002), miscRNA [XR_109421]"	chr17:63106959-63107018	hs|17q24.1	Agilent_HUMAN_G3V2	XR_109421	XR_109421	chr17	 63106959	 63107018	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_35170_PI429285431	0.92760026	A	0.9551255	A	0.981101810437819	0	lncRNA	36571-1_{1..646}	n342147|AF085955|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4634|NULL|-1.1993800|-0.4637283	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n342147|AF085955|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|4634|NULL|-1.1993800|-0.4637283	chr6	143473360	143474005	-	NA	NA	NA	NA	AIG1	NA	chr6:143463360-143484382	inner
CUST_26639_PI429285431	3.2288601	A	1.3152244	A	3.76757361222639	0	lncRNA	28142-1_{1..414}	lnc-UBXN4-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-UBXN4-2:5	chr2	136764766	136765179	+	lnc-UBXN4-2	lnc-UBXN4-2:5	ENSG00000231890.1	AC093391.2	NA	NA	NA	inter
LNCA_21_P0001559	4.0629225	P	2.5562751	A	2.84148953094709	0	lncRNA	TCONS_00001611	NA	NA	NA	NA	XLOC_000943	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000943), lincRNA [TCONS_00001611]"	chr1:102830639-102830580	hs|1p21.1	Agilent_HUMAN_G3V2	TCONS_00001611	TCONS_00001611	chr1	102830580	102830639	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15256_PI429285431	0.97680044	A	0.9014528	A	1.05361489040319	0	lncRNA	16928-1_{1..857}	lnc-NGLY1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NGLY1-1:2	chr3	 25915132	 25915988	-	lnc-NGLY1-1	lnc-NGLY1-1:2	XLOC_003069	linc-NGLY1-1	NA	NA	NA	inter
LNCA_21_P0004366	0.9107063	A	1.5766474	A	0.630277427205004	0	lncRNA	TCONS_00010279	NA	NA	NA	NA	XLOC_004746	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004746), lincRNA [TCONS_00010279]"	chr5:17378145-17378086	hs|5p15.1	Agilent_HUMAN_G3V2	TCONS_00010279	TCONS_00010279	chr5	 17378086	 17378145	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00316694	0.91677	A	3.4522083	P	0.172487258478991	0	lncRNA	XR_108679	XR_108679	XR_108679	NA	Hs.563409	LOC100506647	uncharacterized LOC100506647	ENST00000427276	THC2606443	NA	"PREDICTED: Homo sapiens hypothetical LOC100506647 (LOC100506647), miscRNA [XR_108679]"	chr6:14281107-14281048	hs|6p23	Agilent_HUMAN_G3V2	XR_108679	XR_108679	chr6	 14281048	 14281107	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005341	1.937957	A	2.6967385	A	0.590995274495178	0	lncRNA	ENST00000426187	NA	NA	NA	NA	XLOC_006670	NA	ENST00000426187	THC2707474	NA	"BROAD Institute lincRNA (XLOC_006670), lincRNA [TCONS_00013278]"	chr7:156225567-156225508	hs|7q36.3	Agilent_HUMAN_G3V2	ENST00000426187	ENST00000426187	chr7	156225508	156225567	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004258	0.91865087	A	0.89816135	A	1.0143035841563	0	lncRNA	TCONS_00009983	NA	NA	NA	NA	XLOC_004409	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004409), lincRNA [TCONS_00009983]"	chr5:65702791-65702850	hs|5q12.3	Agilent_HUMAN_G3V2	TCONS_00009983	TCONS_00009983	chr5	 65702791	 65702850	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22302_PI429285431	0.92205644	A	1.3997781	A	0.718110787482954	0	lncRNA	23901-2_{3001..4282}	lnc-C8orf83-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C8orf83-2:1	chr8	 93890449	 93891730	-	lnc-C8orf83-2	lnc-C8orf83-2:1	ENSG00000248858.2	RP11-100L22.2	C8orf83	NA	chr8:93895758-93901730	inter
LNCA_21_P0011766	6.5918617	P	9.005266	P	0.187712379090568	0	lncRNA	TCONS_l2_00013262	NA	NA	NA	NA	XLOC_l2_007147	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007147), lincRNA [TCONS_l2_00013262]"	chr19:58522063-58522004	hs|19q13.43	Agilent_HUMAN_G3V2	TCONS_l2_00013262	TCONS_l2_00013262	chr19	 58522004	 58522063	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005293	7.1903243	P	7.7268133	P	0.689446734043761	0	lncRNA	ENST00000440034	NA	NA	NA	NA	XLOC_006404	NA	ENST00000440034	NA	NA	"BROAD Institute lincRNA (XLOC_006404), lincRNA [TCONS_00013153]"	chr7:33835174-33835115	hs|7p14.3	Agilent_HUMAN_G3V2	ENST00000440034	ENST00000440034	chr7	 33835115	 33835174	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002950	0.9308274	A	0.9956573	A	0.95605803433587	0	lncRNA	TCONS_00005996	NA	NA	NA	NA	XLOC_002621	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002621), lincRNA [TCONS_00005996]"	chr3:40685239-40685524	hs|3p22.1	Agilent_HUMAN_G3V2	TCONS_00005996	TCONS_00005996	chr3	 40685239	 40685524	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012403	2.7011507	A	2.18735	A	1.42780672279571	0	lncRNA	TCONS_l2_00018877	NA	NA	NA	NA	XLOC_l2_009899	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009899), lincRNA [TCONS_l2_00018877]"	chr3:137496502-137496561	hs|3q22.3	Agilent_HUMAN_G3V2	TCONS_l2_00018877	TCONS_l2_00018877	chr3	137496502	137496561	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00813192	2.4317145	A	2.318679	A	1.08150137536303	0	lncRNA	ENST00000534659	NA	NA	NA	NA	XLOC_l2_002761	NA	ENST00000534659	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002761), lincRNA [TCONS_l2_00005177]"	chr11:104774292-104774233	hs|11q22.3	Agilent_HUMAN_G3V2	ENST00000534659	ENST00000534659	chr11	104774233	104774292	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004296	2.7982247	A	2.1894426	A	1.52497130911965	0	lncRNA	TCONS_00010091	NA	NA	NA	NA	XLOC_004548	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004548), lincRNA [TCONS_00010091]"	chr5:130592886-130592945	hs|5q23.3	Agilent_HUMAN_G3V2	TCONS_00010091	TCONS_00010091	chr5	130592886	130592945	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009901	0.91248983	A	0.91716087	A	0.996767517551149	0	lncRNA	ENST00000428495	NA	NA	NA	NA	XLOC_013743	NA	ENST00000428495	NA	NA	"BROAD Institute lincRNA (XLOC_013743), lincRNA [TCONS_00028045]"	chr20:39326756-39326697	hs|20q12	Agilent_HUMAN_G3V2	ENST00000428495	ENST00000428495	chr20	 39326697	 39326756	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006294	0.910932	A	0.914302	A	0.997666820106875	0	lncRNA	TCONS_00016405	NA	NA	NA	NA	XLOC_007775	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007775), lincRNA [TCONS_00016405]"	chr9:93868794-93868735	hs|9q22.2	Agilent_HUMAN_G3V2	TCONS_00016405	TCONS_00016405	chr9	 93868735	 93868794	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008017	0.9104429	A	0.91333735	A	0.997995731377402	0	lncRNA	XR_109148	XR_109148	XR_109148	NA	Hs.679591	LOC100507566	uncharacterized LOC100507566	ENST00000453862	THC2608416	NA	"PREDICTED: Homo sapiens hypothetical LOC100507566 (LOC100507566), miscRNA [XR_109148]"	chr13:97824785-97824726	hs|13q32.1	Agilent_HUMAN_G3V2	XR_109148	XR_109148	chr13	 97824726	 97824785	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001654	4.6068172	P	4.452685	P	1.1127520819012	0	lncRNA	TCONS_00001900	NA	NA	NA	NA	XLOC_001289	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001289), lincRNA [TCONS_00001900]"	chr1:244938465-244938406	hs|1q44	Agilent_HUMAN_G3V2	TCONS_00001900	TCONS_00001900	chr1	244938406	244938465	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004138	0.9046963	A	0.8948633	A	1.00683899607986	0	lncRNA	ENST00000504280	NA	NA	NA	NA	XLOC_004860	NA	ENST00000504280	NA	NA	"BROAD Institute lincRNA (XLOC_004860), lincRNA [TCONS_00009688]"	chr5:68322642-68322583	hs|5q13.1	Agilent_HUMAN_G3V2	ENST00000504280	ENST00000504280	chr5	 68322583	 68322642	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008699	0.90495074	A	0.89364594	A	1.00786667118092	0	lncRNA	TCONS_00023564	NA	NA	NA	NA	XLOC_011388	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011388), lincRNA [TCONS_00023564]"	chr15:101408647-101408706	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_00023564	TCONS_00023564	chr15	101408647	101408706	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011360	0.9073229	A	0.8908472	A	1.01148554311524	0	lncRNA	TCONS_l2_00008966	NA	NA	NA	NA	XLOC_l2_004857	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004857), lincRNA [TCONS_l2_00008966]"	chr15:30248480-30121815	hs|15q13.1	Agilent_HUMAN_G3V2	TCONS_l2_00008966	TCONS_l2_00008966	chr15	 30121815	 30248480	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007331	4.9522147	P	4.604093	P	1.27290230770931	0	lncRNA	TCONS_00019599	NA	NA	NA	NA	XLOC_009402	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009402), lincRNA [TCONS_00019599]"	chr11:30343202-30343143	hs|11p14.1	Agilent_HUMAN_G3V2	TCONS_00019599	TCONS_00019599	chr11	 30343143	 30343202	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007408	0.9177703	A	0.89442366	A	1.01631430607809	0	lncRNA	TCONS_00019777	NA	NA	NA	NA	XLOC_009576	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009576), lincRNA [TCONS_00019777]"	chr11:118935517-118935458	hs|11q23.3	Agilent_HUMAN_G3V2	TCONS_00019777	TCONS_00019777	chr11	118935458	118935517	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012655	5.529225	P	5.2491927	P	1.21422206888843	0	lncRNA	THC2496594	NA	NA	NA	NA	XLOC_l2_011043	NA	NA	THC2496594	NA	"BROAD Institute lincRNA (XLOC_l2_011043), lincRNA [TCONS_l2_00021053]"	chr4:009153040-009152981	hs|4p16.1	Agilent_HUMAN_G3V2	THC2496594	THC2496594	chr4	  9152981	  9153040	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25641_PI429285431	2.7480385	A	3.2165258	A	0.722721991784881	0	lncRNA	27171-1_{1..478}	lnc-CYB561-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CYB561-6:1	chr17	 61208225	 61208702	-	lnc-CYB561-6	lnc-CYB561-6:1	ENSG00000264513.1	RP11-556O9.2	TANC2	NA	chr17:61198225-61218308	inter
CUST_589_PI429285431	0.9181241	A	0.91348284	A	1.00322225662685	0	lncRNA	581-1_{1..517}	"transcript_id ""ENST00000457636.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000457636.1"" | genecode_v17"	chr1	222988420	222988936	+	ENSG00000228106.1	ENST00000457636.1	RP11-452F19.3	RP11-452F19.3-004	DISP1	NA	chr1:222988431-223020725	inner
LNCA_19_P00320603	9.374144	P	8.845108	P	1.4429646931411	0	lncRNA	TCONS_00008529	NA	NA	NA	NA	XLOC_004016	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004016), lincRNA [TCONS_00008529]"	chr4:90472630-90472571	hs|4q22.1	Agilent_HUMAN_G3V2	TCONS_00008529	TCONS_00008529	chr4	 90472571	 90472630	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33291_PI429285431	1.2822299	A	0.93835044	A	1.26916484037828	0	lncRNA	34874-1_{1..718}	n340002|AK130482|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2455|NULL|0.2597920|-0.4146672	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340002|AK130482|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2455|NULL|0.2597920|-0.4146672	chr10	 27810961	 27811678	+	NA	NA	NA	NA	RAB18	NA	chr10:27800961-27821539	inner
CUST_17204_PI429285431	2.3307803	A	2.8102436	A	0.717244397972093	0	lncRNA	18917-1_{1..506}	lnc-PAX4-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PAX4-1:2	chr7	127285110	127285615	-	lnc-PAX4-1	lnc-PAX4-1:2	XLOC_006596	linc-PAX4	SND1	NA	chr7:127292202-127295304	inter
LNCA_19_P00321178	0.9599308	A	1.0131751	A	0.963766593680709	0	lncRNA	ENST00000504928	NA	BC050580	NA	Hs.509788	XLOC_005747	NA	ENST00000504928	THC2616590	NA	"BROAD Institute lincRNA (XLOC_005747), lincRNA [TCONS_00011507]"	chr6:53434371-53434312	hs|6p12.1	Agilent_HUMAN_G3V2	ENST00000504928	ENST00000504928	chr6	 53434312	 53434371	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6226_PI429285431	7.7359776	P	7.7057877	P	1.02114652899998	0	lncRNA	6152-1_{1..653}	"transcript_id ""ENST00000586949.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000586949.1"" | genecode_v17"	chr18	 59273301	 59273953	-	ENSG00000267279.1	ENST00000586949.1	RP11-879F14.2	RP11-879F14.2-001	NA	NA	NA	inter
CUST_36277_PI429285431	0.9213144	A	0.9212322	A	1.00005697832145	0	lncRNA	37513-1_{1..1696}	n344807|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_356|NULL|-1.3564700|-0.2927013	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n344807|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_356|NULL|-1.3564700|-0.2927013	chr4	 53578594	 53580289	+	NA	NA	NA	NA	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-42.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.40;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00"	NA	inter
LNCA_21_P0009889	0.9048139	A	0.89568245	A	1.00634951204823	0	lncRNA	THC2714922	NA	NA	NA	NA	XLOC_013684	NA	NA	THC2714922	NA	"BROAD Institute lincRNA (XLOC_013684), lincRNA [TCONS_00028018]"	chr20:022528712-022528653	hs|20p11.21	Agilent_HUMAN_G3V2	THC2714922	THC2714922	chr20	 22528653	 22528712	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20708_PI429285431	8.207184	P	8.0664015	P	1.10250293773458	0	lncRNA	22343-1_{1..699}	lnc-HYI-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HYI-1:1	chr1	 43913774	 43914472	-	lnc-HYI-1	lnc-HYI-1:1	ENSG00000229372.1	SZT2-AS1	SZT2	"hg19_refFlat_SZT2:range=chr1:43855640-439161515'pad=0,hg19_refFlat_SZT2:range=chr1:43855640-439161515'pad=0 3'pad=0 strand=+ repeatMasking=none,-104.20chr1:43903774-43919918"	NA	inner
LNCA_21_P0011909	8.523355	P	8.270794	P	1.19132001072749	0	lncRNA	TCONS_l2_00014514	NA	NA	NA	NA	XLOC_l2_007967	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007967), lincRNA [TCONS_l2_00014514]"	chr2:38367505-38365735	hs|2p22.2	Agilent_HUMAN_G3V2	TCONS_l2_00014514	TCONS_l2_00014514	chr2	 38365735	 38367505	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22179_PI429285431	1.9549774	A	0.9301667	A	2.03469238908245	0	lncRNA	23781-1_{1..391}	lnc-CCT5-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCT5-6:1	chr5	  9422460	  9422850	+	lnc-CCT5-6	lnc-CCT5-6:1	ENSG00000248537.1	CTD-2201E9.4	SEMA5A	NA	chr5:9412460-9432593	inner
LNCA_21_P0004087	0.90932953	A	0.8905536	A	1.01309953991532	0	lncRNA	TCONS_00009572	NA	NA	NA	NA	XLOC_004689	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004689), lincRNA [TCONS_00009572]"	chr8:119331-119272	hs|8p23.3	Agilent_HUMAN_G3V2	TCONS_00009572	TCONS_00009572	chr8	   119272	   119331	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001714	0.9122842	A	0.8910093	A	1.01485590505403	0	lncRNA	TCONS_00002259	NA	NA	NA	NA	XLOC_000618	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000618), lincRNA [TCONS_00002259]"	chr1:233001141-233001200	hs|1q42.2	Agilent_HUMAN_G3V2	TCONS_00002259	TCONS_00002259	chr1	233001141	233001200	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012640	1.3064941	A	0.8914771	A	1.33331438811148	0	lncRNA	TCONS_l2_00020925	NA	NA	NA	NA	XLOC_l2_010968	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010968), lincRNA [TCONS_l2_00020925]"	chr4:184718998-184719057	hs|4q35.1	Agilent_HUMAN_G3V2	TCONS_l2_00020925	TCONS_l2_00020925	chr4	184718998	184719057	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011412	1.088702	A	1.7201523	A	0.645527159071556	0	lncRNA	BC101081	NA	BC101081	NA	NA	DNM1P46	DNM1 pseudogene 46	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005074), lincRNA [TCONS_l2_00009545]"	chr15:100345047-100341363	hs|15q26.3	Agilent_HUMAN_G3V2	BC101081	BC101081	chr15	100341363	100345047	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12120_PI429285431	0.95366514	A	0.93051994	A	1.01617241048966	0	lncRNA	13716-1_{1..1568}	lnc-MAP9-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAP9-2:2	chr4	156129455	156131022	-	lnc-MAP9-2	lnc-MAP9-2:2	XLOC_004132	linc-FGG-1	NPY2R	NA	chr4:156129781-156138228	inter
CUST_21767_PI429285431	1.5006421	A	1.262123	A	1.17978101609459	0	lncRNA	23377-1_{1..449}	lnc-RGMA-2:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RGMA-2:4	chr15	 93331426	 93331874	-	lnc-RGMA-2	lnc-RGMA-2:4	ENSG00000258382.1	CTD-2313J17.2	NA	NA	NA	inter
CUST_45182_PI429285431	0.9223564	A	0.91741556	A	1.00343060040142	0	lncRNA	49654-1_{1..520}	"gi|374429575|ref|NR_046245.1| Homo sapiens ADAM metallopeptidase domain 3A-like (LOC100130964), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,ncbi,"	">gi|374429575|ref|NR_046245.1| Homo sapiens ADAM metallopeptidase domain 3A-like (LOC100130964), non-coding RNA"	Chr8	 39420631	 39421150	+	100130964	NR_046245.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0010605	2.0097058	A	1.8234053	A	1.13784220517255	0	lncRNA	TCONS_l2_00001072	NA	NA	NA	NA	XLOC_l2_000804	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000804), lincRNA [TCONS_l2_00001072]"	chr1:21738224-21738165	hs|1p36.12	Agilent_HUMAN_G3V2	TCONS_l2_00001072	TCONS_l2_00001072	chr1	 21738165	 21738224	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005408	4.1056175	P	4.6559005	P	0.682886159843526	0	lncRNA	TCONS_00013553	NA	NA	NA	NA	XLOC_006188	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006188), lincRNA [TCONS_00013553]"	chr7:99594670-99594729	hs|7q22.1	Agilent_HUMAN_G3V2	TCONS_00013553	TCONS_00013553	chr7	 99594670	 99594729	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004132	0.9143126	A	0.8997663	A	1.01013372879159	0	lncRNA	ENST00000512882	NA	NA	NA	NA	XLOC_004844	NA	ENST00000512882	NA	NA	"BROAD Institute lincRNA (XLOC_004844), lincRNA [TCONS_00009676]"	chr5:61031024-61030965	hs|5q12.1	Agilent_HUMAN_G3V2	ENST00000512882	ENST00000512882	chr5	 61030965	 61031024	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002343	0.99730617	A	1.0277101	A	0.979146114996897	0	lncRNA	TCONS_00004009	NA	NA	NA	NA	XLOC_001835	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001835), lincRNA [TCONS_00004009]"	chr2:214038923-214038982	hs|2q34	Agilent_HUMAN_G3V2	TCONS_00004009	TCONS_00004009	chr2	214038923	214038982	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39371_PI429285431	6.8144355	P	6.411495	P	1.32220007350252	0	lncRNA	40335-1_{1..3000}	n386492|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mkn.1||2.0645400|-0.2834765	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n386492|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc010mkn.1||2.0645400|-0.2834765	chr9	 35406751	 35409750	+	NA	NA	NA	NA	UNC13B	NA	chr9:35396751-35405332	inter
CUST_48242_PI429285431	1.0328975	A	1.0119404	A	1.01463237500974	0	lncRNA	52104-1_{1..763}	hg19_lincRNAsTranscripts_TCONS_l2_00000926 range=chr1:241815561-241842840 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00000926 range=chr1:241815561-241842840 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr1	241815561	241816323	+	NA	NA	NA	NA	WDR64	NA	chr1:241815580-241852840	inner
LNCA_21_P0000992	1.7527437	A	0.94496495	A	1.75051418202405	0	lncRNA	ENST00000426794	NA	NA	NA	NA	XLOC_000277	NA	ENST00000426794	NA	NA	"BROAD Institute lincRNA (XLOC_000277), lincRNA [TCONS_00000244]"	chr1:86066311-86066370	hs|1p22.3	Agilent_HUMAN_G3V2	ENST00000426794	ENST00000426794	chr1	 86066311	 86066370	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014160	4.294513	P	4.46766	P	0.886905931365191	0	lncRNA	XR_108646	XR_108646	XR_108646	NA	NA	LOC100505697	uncharacterized LOC100505697	ENST00000442781	THC2678006	NA	"PREDICTED: Homo sapiens hypothetical LOC100505697 (LOC100505697), miscRNA [XR_108646]"	chr6:40484141-40484082	hs|6p21.2	Agilent_HUMAN_G3V2	XR_108646	XR_108646	chr6	 40484082	 40484141	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003389	0.90781605	A	1.5771204	A	0.628809818617708	0	lncRNA	ENST00000420701	NA	NA	NA	NA	XLOC_003658	NA	ENST00000420701	THC2690588	NA	"BROAD Institute lincRNA (XLOC_003658), lincRNA [TCONS_00007596]"	chr4:118293695-118293754	hs|4q26	Agilent_HUMAN_G3V2	ENST00000420701	ENST00000420701	chr4	118293695	118293754	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00320411	0.9052591	A	0.8995154	A	1.00398916508267	0	lncRNA	TCONS_00010104	NA	NA	NA	NA	XLOC_004573	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004573), lincRNA [TCONS_00010104]"	chr5:139124767-139124826	hs|5q31.2	Agilent_HUMAN_G3V2	TCONS_00010104	TCONS_00010104	chr5	139124767	139124826	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009915	2.2377129	A	3.2234035	P	0.504983935908735	0	lncRNA	ENST00000431983	NA	NA	NA	NA	XLOC_013808	NA	ENST00000431983	THC2718818	NA	"BROAD Institute lincRNA (XLOC_013808), lincRNA [TCONS_00028449]"	chr20:54871301-54871242	hs|20q13.2	Agilent_HUMAN_G3V2	ENST00000431983	ENST00000431983	chr20	 54871242	 54871301	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15172_PI429285431	9.397664	P	9.770443	P	0.772293428206728	0	lncRNA	16836-1_{1..277}	lnc-AL359392.1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-AL359392.1-2:1	chr13	 76588495	 76588771	+	lnc-AL359392.1-2	lnc-AL359392.1-2:1	XLOC_010435	linc-CLN5-2	NA	NA	NA	inter
LNCA_21_P0006024	5.2621255	P	5.678147	P	0.749488631417014	0	lncRNA	ENST00000443163	NA	NA	NA	NA	XLOC_007436	NA	ENST00000443163	NA	NA	"BROAD Institute lincRNA (XLOC_007436), lincRNA [TCONS_00015703]"	chr9:89311349-89311408	hs|9q21.33	Agilent_HUMAN_G3V2	ENST00000443163	ENST00000443163	chr9	 89311349	 89311408	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006884	5.989528	P	5.7456684	P	1.18415636667759	0	lncRNA	TCONS_00018249	NA	NA	NA	NA	XLOC_008527	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008527), lincRNA [TCONS_00018249]"	chr10:81214073-81214132	hs|10q22.3	Agilent_HUMAN_G3V2	TCONS_00018249	TCONS_00018249	chr10	 81214073	 81214132	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002940	9.30514	P	9.30514	P	1	0	lncRNA	TCONS_00005971	NA	NA	NA	NA	XLOC_002602	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002602), lincRNA [TCONS_00005971]"	chr3:27755353-27755412	hs|3p24.1	Agilent_HUMAN_G3V2	TCONS_00005971	TCONS_00005971	chr3	 27755353	 27755412	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008263	0.91640407	A	0.8931747	A	1.01623169795129	0	lncRNA	TCONS_00022304	NA	NA	NA	NA	XLOC_010693	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010693), lincRNA [TCONS_00022304]"	chr13:95157832-95157773	hs|13q32.1	Agilent_HUMAN_G3V2	TCONS_00022304	TCONS_00022304	chr13	 95157773	 95157832	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014373	1.2157012	A	1.7067052	A	0.711529757835181	0	lncRNA	XR_109500	XR_109500	XR_109500	NA	Hs.658981	LOC100506419	uncharacterized LOC100506419	NA	THC2492182	NA	"PREDICTED: Homo sapiens hypothetical LOC100506419 (LOC100506419), miscRNA [XR_109500]"	chr19:57057238-57057179	hs|19q13.43	Agilent_HUMAN_G3V2	XR_109500	XR_109500	chr19	 57057179	 57057238	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010389	1.4689785	A	0.8988666	A	1.48463871944799	0	lncRNA	AK128164	NA	AK128164	NA	Hs.640093	XLOC_014412	NA	NA	THC2513367	NA	"BROAD Institute lincRNA (XLOC_014412), lincRNA [TCONS_00029494]"	chr22:50111861-50111802	hs|22q13.33	Agilent_HUMAN_G3V2	AK128164	AK128164	chr22	 50111802	 50111861	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008776	3.4165049	P	4.1365657	P	0.60707185761751	0	lncRNA	TCONS_00023775	NA	NA	NA	NA	XLOC_011570	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011570), lincRNA [TCONS_00023775]"	chr15:89340280-89340221	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00023775	TCONS_00023775	chr15	 89340221	 89340280	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24282_PI429285431	0.9346311	A	0.92170155	A	1.00900236081751	0	lncRNA	25833-1_{1..796}	lnc-CCNE2-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCNE2-1:3	chr8	 95805031	 95805826	-	lnc-CCNE2-1	lnc-CCNE2-1:3	ENSG00000254307.1	KB-1608C10.2	DPY19L4	NA	chr8:95795031-95806076	inner
LNCA_33_P3342797	1.006571	A	1.0248401	A	0.987416665478834	0	lncRNA	XR_110089	XR_110089	XR_110089	   401442	Hs.678992	LOC401442	uncharacterized LOC401442	NA	THC2602027	NA	"PREDICTED: Homo sapiens hypothetical LOC401442 (LOC401442), miscRNA [XR_110089]"	chr8:690305-690364	hs|8p23.3	Agilent_HUMAN_G3V2	XR_110089	XR_110089	chr8	   690305	   690364	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8753_PI429285431	3.378192	P	2.7526112	A	1.54283181345104	0	lncRNA	10295-1_{1..532}	lnc-WDR74-1:17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-WDR74-1:17	chr11	 62622896	 62623427	-	lnc-WDR74-1	lnc-WDR74-1:17	ENSG00000255717	SNHG1	SLC3A2	NA	chr11:62623484-62632951	inter
CUST_29664_PI429285431	1.2676238	A	1.0902851	A	1.1307960117567	0	lncRNA	31426-1_{1..277}	n333293|AY103156|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084449|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084449|1.7703500|-0.0901463	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333293|AY103156|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000084449|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000084449|1.7703500|-0.0901463	chr7	143018787	143019063	+	NA	NA	NA	NA	CLCN1	NA	chr7:143013219-143037988	inter
LNCA_21_P0004966	0.9946704	A	1.0274538	A	0.977532517902834	0	lncRNA	TCONS_00012009	NA	NA	NA	NA	XLOC_005524	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005524), lincRNA [TCONS_00012009]"	chr6:159887472-159887531	hs|6q25.3	Agilent_HUMAN_G3V2	TCONS_00012009	TCONS_00012009	chr6	159887472	159887531	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003609	0.98738825	A	1.025292	A	0.974069251810997	0	lncRNA	ENST00000511875	NA	NA	NA	NA	XLOC_003536	NA	ENST00000511875	NA	NA	"BROAD Institute lincRNA (XLOC_003536), lincRNA [TCONS_00008072]"	chr4:52913062-52913120	hs|4q12	Agilent_HUMAN_G3V2	ENST00000511875	ENST00000511875	chr4	 52913062	 52913120	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48546_PI429285431	5.8795204	P	5.230119	P	1.56851725487023	0	lncRNA	52395-1_{1..662}	hg19_lincRNAsTranscripts_TCONS_l2_00014793 range=chr2:111982649-112123479 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014793 range=chr2:111982649-112123479 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	111982649	111983310	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014096	4.9051714	P	5.10581	P	0.870165304768269	0	lncRNA	XR_108421	XR_108421	XR_108421	NA	NA	LOC100507265	uncharacterized LOC100507265	NA	THC2492905	NA	"PREDICTED: Homo sapiens hypothetical LOC100507265 (LOC100507265), miscRNA [XR_108421]"	chr2:204102235-204102176	hs|2q33.2	Agilent_HUMAN_G3V2	XR_108421	XR_108421	chr2	204102176	204102235	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013826	1.7551	A	1.0067357	A	1.67988712654336	0	lncRNA	TCONS_l2_00030552	NA	NA	NA	NA	XLOC_l2_015773	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015773), lincRNA [TCONS_l2_00030552]"	chrX:99405934-99405875	hs|Xq22.1	Agilent_HUMAN_G3V2	TCONS_l2_00030552	TCONS_l2_00030552	chrX	 99405875	 99405934	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006076	0.9384611	A	1.0013218	A	0.957363892388447	0	lncRNA	ENST00000452477	NA	NA	NA	NA	XLOC_007700	NA	ENST00000452477	NA	NA	"BROAD Institute lincRNA (XLOC_007700), lincRNA [TCONS_00015818]"	chr9:46359317-46359258	hs|9p11.2	Agilent_HUMAN_G3V2	ENST00000452477	ENST00000452477	chr9	 46359258	 46359317	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31442_PI429285431	1.9460914	A	0.91212654	A	2.04764392539339	0	lncRNA	33211-1_{1..2233}	n337911|AL117454|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|294|NULL|-0.1862350|-0.3035647	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n337911|AL117454|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|294|NULL|-0.1862350|-0.3035647	chr15	 68591127	 68593359	-	NA	NA	NA	NA	ITGA11	"hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-64.80chr15:68594042-68603343"	NA	inter
LNCA_21_P0007497	0.9054534	A	0.8942815	A	1.00777383152492	0	lncRNA	XR_109133	XR_109133	XR_109133	NA	Hs.211461	LOC100506465	uncharacterized LOC100506465	NA	THC2493425	NA	"PREDICTED: Homo sapiens hypothetical LOC100506465, transcript variant 2 (LOC100506465), miscRNA [XR_109133]"	chr12:114182847-114182788	hs|12q24.13	Agilent_HUMAN_G3V2	XR_109133	XR_109133	chr12	114182788	114182847	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006030	1.1619027	A	0.8938596	A	1.20417335494373	0	lncRNA	ENST00000366188	NA	NA	NA	NA	XLOC_007464	NA	ENST00000366188	NA	NA	"BROAD Institute lincRNA (XLOC_007464), lincRNA [TCONS_00015717]"	chr9:95909433-95909983	hs|9q22.31	Agilent_HUMAN_G3V2	ENST00000366188	ENST00000366188	chr9	 95909433	 95909983	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011666	1.9507076	A	1.0501722	A	1.86675862920389	0	lncRNA	TCONS_l2_00012260	NA	NA	NA	NA	XLOC_l2_006574	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006574), lincRNA [TCONS_l2_00012260]"	chr19:7440785-7440844	hs|19p13.2	Agilent_HUMAN_G3V2	TCONS_l2_00012260	TCONS_l2_00012260	chr19	  7440785	  7440844	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005173	0.9161421	A	0.8929889	A	1.01617804536161	0	lncRNA	TCONS_00012764	NA	NA	NA	NA	XLOC_005793	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005793), lincRNA [TCONS_00012764]"	chr6:104949847-104949788	hs|6q16.3	Agilent_HUMAN_G3V2	TCONS_00012764	TCONS_00012764	chr6	104949788	104949847	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001548	0.9194702	A	0.89626896	A	1.01621188342489	0	lncRNA	TCONS_00001584	NA	NA	NA	NA	XLOC_000917	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000917), lincRNA [TCONS_00001584]"	chr1:92011009-92010950	hs|1p22.1	Agilent_HUMAN_G3V2	TCONS_00001584	TCONS_00001584	chr1	 92010950	 92011009	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014401	6.321886	P	6.8142204	P	0.710873913856695	0	lncRNA	XR_109615	XR_109615	XR_109615	NA	NA	LOC100505944	uncharacterized LOC100505944	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505944 (LOC100505944), miscRNA [XR_109615]"	chr20:45529084-45529025	hs|20q13.12	Agilent_HUMAN_G3V2	XR_109615	XR_109615	chr20	 45529025	 45529084	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003010	3.7574794	P	3.41994	P	1.26359961269668	0	lncRNA	TCONS_00006163	NA	NA	NA	NA	XLOC_002769	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002769), lincRNA [TCONS_00006163]"	chr3:116651152-116651211	hs|3q13.31	Agilent_HUMAN_G3V2	TCONS_00006163	TCONS_00006163	chr3	116651152	116651211	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38689_PI429285431	4.3340173	P	4.3607244	P	0.981658342658111	0	lncRNA	39686-1_{1..1297}	n384082|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zon.1||1.5729200|-0.1731421	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n384082|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zon.1||1.5729200|-0.1731421	chr22	 18958026	 18959322	+	NA	NA	NA	NA	DGCR2	NA	chr22:19023795-19028742	inter
LNCA_21_P0014428	4.4854355	P	4.6588254	P	0.886756619618632	0	lncRNA	XR_109727	XR_109727	XR_109727	NA	NA	LOC100506662	uncharacterized LOC100506662	NA	THC2491995	NA	"PREDICTED: Homo sapiens hypothetical LOC100506662 (LOC100506662), miscRNA [XR_109727]"	chr22:42897969-42897910	hs|22q13.2	Agilent_HUMAN_G3V2	XR_109727	XR_109727	chr22	 42897910	 42897969	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004877	3.849381	P	4.570727	P	0.606531298930663	0	lncRNA	TCONS_00011802	NA	NA	NA	NA	XLOC_005278	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005278), lincRNA [TCONS_00011802]"	chr6:37484664-37502057	hs|6p21.2	Agilent_HUMAN_G3V2	TCONS_00011802	TCONS_00011802	chr6	 37484664	 37502057	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006688	1.1426282	A	1.0084925	A	1.0974351575551	0	lncRNA	TCONS_00017848	NA	NA	NA	NA	XLOC_008537	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008537), lincRNA [TCONS_00017848]"	chr10:86048574-86048633	hs|10q23.1	Agilent_HUMAN_G3V2	TCONS_00017848	TCONS_00017848	chr10	 86048574	 86048633	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11613_PI429285431	0.97512877	A	0.9456798	A	1.02062222980634	0	lncRNA	13193-1_{1..950}	lnc-CDH6-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CDH6-2:3	chr5	 29162523	 29163472	+	lnc-CDH6-2	lnc-CDH6-2:3	XLOC_004325	linc-CDH6-3	NA	NA	NA	inter
CUST_47366_PI429285431	6.7666974	P	7.3004827	P	0.690740011453708	0	lncRNA	51416-1_{1..828}	"gi|223556017|ref|NR_026845.1| Homo sapiens chromosome 21 open reading frame 119 (C21orf119), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|223556017|ref|NR_026845.1| Homo sapiens chromosome 21 open reading frame 119 (C21orf119), non-coding RNA"	Chr21	 33765442	 33766269	+	84996	NR_026845.1	NA	NA	NA	NA	NA	inter
CUST_17376_PI429285431	4.4429502	P	5.087481	P	0.639700803285867	0	lncRNA	19097-1_{1..277}	lnc-KRT80-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KRT80-5:1	chr12	 52234807	 52235083	-	lnc-KRT80-5	lnc-KRT80-5:1	XLOC_010078	linc-FIGNL2-1	FIGNL2	NA	chr12:52224807-52225701	inter
LNCA_21_P0000985	0.9119029	A	0.9157678	A	0.997324640631568	0	lncRNA	ENST00000415686	NA	NA	NA	NA	XLOC_000256	NA	ENST00000415686	THC2691094	NA	"BROAD Institute lincRNA (XLOC_000256), lincRNA [TCONS_00000229]"	chr1:73820869-73820928	hs|1p31.1	Agilent_HUMAN_G3V2	ENST00000415686	ENST00000415686	chr1	 73820869	 73820928	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013898	2.2524986	A	0.9024889	A	2.54913839378338	0	lncRNA	TCONS_l2_00030952	NA	NA	NA	NA	XLOC_l2_015964	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015964), lincRNA [TCONS_l2_00030952]"	chrY:28425468-28425319	hs|Yq11.23	Agilent_HUMAN_G3V2	TCONS_l2_00030952	TCONS_l2_00030952	chrY	 28425319	 28425468	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013316	2.6567276	A	1.8802723	A	1.71291706314523	0	lncRNA	TCONS_l2_00026622	NA	NA	NA	NA	XLOC_l2_013868	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013868), lincRNA [TCONS_l2_00026622]"	chr7:64541328-64520284	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00026622	TCONS_l2_00026622	chr7	 64520284	 64541328	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3315819	4.767889	P	5.0124807	P	0.844054639917134	0	lncRNA	XR_108453	XR_108453	XR_108453	   728208	Hs.730147	LOC728208	uncharacterized LOC728208	ENST00000425110	THC2625072	NA	"PREDICTED: Homo sapiens hypothetical LOC728208 (LOC728208), miscRNA [XR_108453]"	chr2:241922775-241922716	hs|2q37.3	Agilent_HUMAN_G3V2	XR_108453	XR_108453	chr2	241922716	241922775	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3364641	3.7335043	P	4.037756	P	0.809862168585048	0	lncRNA	ENST00000378108	XR_111868	XR_111868	NA	Hs.711405	NA	NA	ENST00000378108	THC2484875	NA	"PREDICTED: Homo sapiens hypothetical LOC100132272 (LOC100132272), miscRNA [XR_111868]"	chr19:42749066-42749125	hs|19q13.2	Agilent_HUMAN_G3V2	ENST00000378108	ENST00000378108	chr19	 42749066	 42749125	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002489	1.0921139	A	0.90039855	A	1.14212087920435	0	lncRNA	TCONS_00004377	NA	NA	NA	NA	XLOC_002262	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002262), lincRNA [TCONS_00004377]"	chr2:109685058-109684999	hs|2q12.3	Agilent_HUMAN_G3V2	TCONS_00004377	TCONS_00004377	chr2	109684999	109685058	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_87_PI429201921	1.9446757	A	1.2364969	A	1.6337404468317	0	lncRNA	90-1_{1..2545}	TC05003037.hg.1	 TCONS_00010360-XLOC_004856 // Rinn lincRNAs // linc-CD180-4 chr5:-:67482643-67485177 // chr5 // 100 // 100 // 0 // --- // 0///TCONS_00010944-XLOC_004856 // Rinn lincRNAs // linc-CD180-4 chr5:-:67482631-67484067 // chr5 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr5:-:67482631-67484067	NA	Affy_HUMAN_HTA2.0	TCONS_00010944-XLOC_004856	linc-CD180-4	chr5	 67482631	 67484067	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005812	7.2322326	P	6.8190827	P	1.33158996192422	0	lncRNA	TCONS_00014958	NA	NA	NA	NA	XLOC_007037	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007037), lincRNA [TCONS_00014958]"	chr8:29369412-29369353	hs|8p12	Agilent_HUMAN_G3V2	TCONS_00014958	TCONS_00014958	chr8	 29369353	 29369412	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001973	5.0916967	P	4.071338	P	2.02842322759714	0	lncRNA	TCONS_00003113	NA	NA	NA	NA	XLOC_001875	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001875), lincRNA [TCONS_00003113]"	chr2:222507164-222507223	hs|2q36.1	Agilent_HUMAN_G3V2	TCONS_00003113	TCONS_00003113	chr2	222507164	222507223	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00316361	0.92400616	A	0.9601222	A	0.97527701411293	0	lncRNA	TCONS_00007796	NA	NA	NA	NA	XLOC_004018	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004018), lincRNA [TCONS_00007796]"	chr4:93190158-93190099	hs|4q22.1	Agilent_HUMAN_G3V2	TCONS_00007796	TCONS_00007796	chr4	 93190099	 93190158	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007609	0.9117875	A	0.91540635	A	0.997494747721218	0	lncRNA	TCONS_00020522	NA	NA	NA	NA	XLOC_009839	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009839), lincRNA [TCONS_00020522]"	chr12:93503105-93503164	hs|12q22	Agilent_HUMAN_G3V2	TCONS_00020522	TCONS_00020522	chr12	 93503105	 93503164	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_9457_PI429285431	1.0295566	A	0.90486413	A	1.09027530093687	0	lncRNA	10962-1_{1..468}	lnc-TMEM132B-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TMEM132B-4:2	chr12	126651422	126651889	+	lnc-TMEM132B-4	lnc-TMEM132B-4:2	XLOC_009937	linc-TMEM132C-12	NA	NA	NA	inter
LNCA_21_P0007708	0.907931	A	0.8918392	A	1.01121642342661	0	lncRNA	TCONS_00020784	NA	NA	NA	NA	XLOC_010077	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010077), lincRNA [TCONS_00020784]"	chr12:51365371-51365312	hs|12q13.12	Agilent_HUMAN_G3V2	TCONS_00020784	TCONS_00020784	chr12	 51365312	 51365371	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011673	0.91283715	A	0.8915385	A	1.01487261199865	0	lncRNA	TCONS_l2_00012302	NA	NA	NA	NA	XLOC_l2_006594	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006594), lincRNA [TCONS_l2_00012302]"	chr19:10183823-10183882	hs|19p13.2	Agilent_HUMAN_G3V2	TCONS_l2_00012302	TCONS_l2_00012302	chr19	 10183823	 10183882	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011608	0.91434634	A	0.89209956	A	1.01553979903243	0	lncRNA	TCONS_l2_00011430	NA	NA	NA	NA	XLOC_l2_006173	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006173), lincRNA [TCONS_l2_00011430]"	chr17:66136877-66136818	hs|17q24.2	Agilent_HUMAN_G3V2	TCONS_l2_00011430	TCONS_l2_00011430	chr17	 66136818	 66136877	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3333177	1.8447287	A	2.4994078	A	0.635216767413201	0	lncRNA	XR_112044	XR_112044	XR_112044	   644083	Hs.653211	LOC644083	uncharacterized LOC644083	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC644083 (LOC644083), miscRNA [XR_112044]"	chr1:19726923-19726982	hs|1p36.13	Agilent_HUMAN_G3V2	XR_112044	XR_112044	chr1	 19726923	 19726982	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38302_PI429285431	0.92856884	A	0.9263189	A	1.00156075628168	0	lncRNA	39353-2_{3001..4595}	n381979|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001umb.1||3.5360000|-0.1923835	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n381979|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001umb.1||3.5360000|-0.1923835	chr13	 19623292	 19624886	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0009686	0.92001104	A	0.8998326	A	1.01408489930985	0	lncRNA	TCONS_00026908	NA	NA	NA	NA	XLOC_012981	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012981), lincRNA [TCONS_00026908]"	chr19:15939826-15940011	hs|19p13.12	Agilent_HUMAN_G3V2	TCONS_00026908	TCONS_00026908	chr19	 15939826	 15940011	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19672_PI429285431	0.924794	A	0.9290138	A	0.997079331004134	0	lncRNA	21329-1_{1..842}	lnc-UVRAG-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-UVRAG-1:1	chr11	 75487270	 75488111	+	lnc-UVRAG-1	lnc-UVRAG-1:1	ENSG00000254826.1	CTD-2530H12.2	DGAT2	NA	chr11:75479778-75497974	inner
LNCA_21_P0013455	0.99306035	A	2.4064755	A	0.375421934754705	0	lncRNA	ENST00000481762	NA	NA	NA	NA	XLOC_l2_014048	NA	ENST00000481762	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014048), lincRNA [TCONS_l2_00027517]"	chr7:149260687-149260628	hs|7q36.1	Agilent_HUMAN_G3V2	ENST00000481762	ENST00000481762	chr7	149260628	149260687	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40466_PI429285431	4.3453507	P	4.7727365	P	0.743608001813709	0	lncRNA	41235-3_{6001..8697}	n409391|NR_033781|lncRNA|Homosapiens||RefGeneNoncode|NR_033781||3.8519800|-0.2446254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n409391|NR_033781|lncRNA|Homosapiens||RefGeneNoncode|NR_033781||3.8519800|-0.2446254	chr1	120112502	120115198	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013773	5.9677277	P	5.94595	P	1.01520965859381	0	lncRNA	TCONS_l2_00030260	NA	NA	NA	NA	XLOC_l2_015562	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015562), lincRNA [TCONS_l2_00030260]"	chrX:73327641-73327700	hs|Xq13.2	Agilent_HUMAN_G3V2	TCONS_l2_00030260	TCONS_l2_00030260	chrX	 73327641	 73327700	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003629	1.467703	A	2.4873738	A	0.493228886372722	0	lncRNA	TCONS_00008155	NA	NA	NA	NA	XLOC_003603	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003603), lincRNA [TCONS_00008155]"	chr4:89262885-89262944	hs|4q22.1	Agilent_HUMAN_G3V2	TCONS_00008155	TCONS_00008155	chr4	 89262885	 89262944	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011324	4.1178994	P	4.3693466	P	0.840053315992221	0	lncRNA	TCONS_l2_00008616	NA	NA	NA	NA	XLOC_l2_004640	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004640), lincRNA [TCONS_l2_00008616]"	chr15:42974010-42974069	hs|15q15.2	Agilent_HUMAN_G3V2	TCONS_l2_00008616	TCONS_l2_00008616	chr15	 42974010	 42974069	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32958_PI429285431	1.0522071	A	0.92011034	A	1.09588526382536	0	lncRNA	34576-1_{1..3000}	n339634|AK129941|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2078|NULL|-1.0711200|-0.3916172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339634|AK129941|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2078|NULL|-1.0711200|-0.3916172	chr3	145767417	145770416	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013238	3.0260956	P	1.7574896	A	2.40928656400029	0	lncRNA	TCONS_l2_00025992	NA	NA	NA	NA	XLOC_l2_013467	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013467), lincRNA [TCONS_l2_00025992]"	chr7:66345818-66345877	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025992	TCONS_l2_00025992	chr7	 66345818	 66345877	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00317563	1.7157879	A	2.4314795	A	0.608913160710255	0	lncRNA	ENST00000450294	NA	NA	NA	NA	XLOC_001512	NA	ENST00000450294	THC2685043	NA	"BROAD Institute lincRNA (XLOC_001512), lincRNA [TCONS_00002927]"	chr2:67488184-67488243	hs|2p14	Agilent_HUMAN_G3V2	ENST00000450294	ENST00000450294	chr2	 67488184	 67488243	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008827	2.7016134	A	1.9850942	A	1.64321265779074	0	lncRNA	TCONS_00023956	NA	NA	NA	NA	XLOC_011280	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011280), lincRNA [TCONS_00023956]"	chr15:62768609-62768668	hs|15q22.2	Agilent_HUMAN_G3V2	TCONS_00023956	TCONS_00023956	chr15	 62768609	 62768668	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007746	1.8234733	A	0.8927054	A	1.90629038293693	0	lncRNA	TCONS_00020889	NA	NA	NA	NA	XLOC_010166	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010166), lincRNA [TCONS_00020889]"	chr12:97623965-97623906	hs|12q23.1	Agilent_HUMAN_G3V2	TCONS_00020889	TCONS_00020889	chr12	 97623906	 97623965	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010087	0.91974723	A	0.8960694	A	1.01654764144224	0	lncRNA	TCONS_00028174	NA	NA	NA	NA	XLOC_013531	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013531), lincRNA [TCONS_00028174]"	chr20:43819402-43819461	hs|20q13.12	Agilent_HUMAN_G3V2	TCONS_00028174	TCONS_00028174	chr20	 43819402	 43819461	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007059	0.9201909	A	2.1417484	A	0.428819524655583	0	lncRNA	TCONS_00018726	NA	NA	NA	NA	XLOC_008480	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008480), lincRNA [TCONS_00018726]"	chr10:47696561-47696620	hs|10q11.22	Agilent_HUMAN_G3V2	TCONS_00018726	TCONS_00018726	chr10	 47696561	 47696620	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38502_PI429285431	4.708971	P	5.13562	P	0.743987867475406	0	lncRNA	39516-1_{1..1101}	n383063|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002god.1||2.1826200|-0.1837431	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n383063|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002god.1||2.1826200|-0.1837431	chr17	 13927814	 13928914	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002077	3.0087938	P	4.226351	P	0.430010203997019	0	lncRNA	ENST00000443030	NA	NA	NA	NA	XLOC_002224	NA	ENST00000443030	NA	NA	"BROAD Institute lincRNA (XLOC_002224), lincRNA [TCONS_00003341]"	chr2:101338811-101338752	hs|2q11.2	Agilent_HUMAN_G3V2	ENST00000443030	ENST00000443030	chr2	101338752	101338811	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31155_PI429285431	3.674581	P	3.9928126	P	0.802052400229816	0	lncRNA	32950-1_{1..247}	n337519|EF212266|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395385|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395385|-0.7950500|-0.2991872	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337519|EF212266|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000395385|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000395385|-0.7950500|-0.2991872	chr11	 64405009	 64405255	-	NA	NA	NA	NA	NRXN2	NA	chr11:64395009-64415256	inner
CUST_16074_PI429285431	0.9688584	A	0.93056035	A	1.0269016740089	0	lncRNA	17777-1_{1..579}	lnc-SLC20A1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC20A1-1:1	chr2	113403092	113403670	+	lnc-SLC20A1-1	lnc-SLC20A1-1:1	XLOC_001627	linc-SLC20A1	SLC20A1	NA	chr2:113403434-113413284	inter
LNCA_21_P0014794	0.99434304	A	1.0284259	A	0.976652434124174	0	lncRNA	XR_132592	XR_132592	XR_132592	NA	NA	LOC100652954	uncharacterized LOC100652954	NA	THC2567829	NA	"PREDICTED: Homo sapiens hypothetical LOC100652954 (LOC100652954), miscRNA [XR_132592]"	chr15:51570208-51569529	hs|15q21.2	Agilent_HUMAN_G3V2	XR_132592	XR_132592	chr15	 51569529	 51570208	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006124	0.9595209	A	1.0137366	A	0.963117885721117	0	lncRNA	TCONS_00015916	NA	NA	NA	NA	XLOC_007278	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007278), lincRNA [TCONS_00015916]"	chr9:7304610-7304669	hs|9p24.1	Agilent_HUMAN_G3V2	TCONS_00015916	TCONS_00015916	chr9	  7304610	  7304669	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30375_PI429285431	5.087216	P	4.147822	P	1.91772253548075	0	lncRNA	32151-1_{1..288}	n335484|BC054011|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259397|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259397|1.2608400|-0.2784111	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335484|BC054011|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000259397|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000259397|1.2608400|-0.2784111	chr10	 12077177	 12077464	-	NA	NA	NA	NA	UPF2	NA	chr10:12067177-12085023	inner
LNCA_21_P0005746	1.7847162	A	1.35716	A	1.34495341203395	0	lncRNA	TCONS_00014813	NA	NA	NA	NA	XLOC_006890	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006890), lincRNA [TCONS_00014813]"	chr8:102327648-102327707	hs|8q22.3	Agilent_HUMAN_G3V2	TCONS_00014813	TCONS_00014813	chr8	102327648	102327707	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12925_PI429285431	1.500514	A	1.4302061	A	1.04994073808342	0	lncRNA	14553-1_{1..1194}	lnc-MAPK13-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-MAPK13-1:1	chr6	 36090140	 36091333	+	lnc-MAPK13-1	lnc-MAPK13-1:1	XLOC_005273	linc-MAPK13	MAPK13	NA	chr6:36098262-36101301	inter
LNCA_21_P0004894	4.160808	P	4.4766774	P	0.803366718255095	0	lncRNA	TCONS_00011850	NA	NA	NA	NA	XLOC_005337	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005337), lincRNA [TCONS_00011850]"	chr6:68096188-68096247	hs|6q12	Agilent_HUMAN_G3V2	TCONS_00011850	TCONS_00011850	chr6	 68096188	 68096247	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013902	0.9196707	A	0.92955476	A	0.993172307016942	0	lncRNA	ENST00000430152	NA	NA	NA	NA	XLOC_l2_015889	NA	ENST00000430152	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015889), lincRNA [TCONS_l2_00030991]"	chrY:14465917-14467900	hs|Yq11.21	Agilent_HUMAN_G3V2	ENST00000430152	ENST00000430152	chrY	 14465917	 14467900	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15160_PI429285431	4.8387866	P	5.376581	P	0.688823181119024	0	lncRNA	16822-1_{1..437}	lnc-OR4F29-3:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-OR4F29-3:3	chr1	   530463	   530899	+	lnc-OR4F29-3	lnc-OR4F29-3:3	XLOC_000004	linc-SAMD11-8	NA	NA	NA	inter
LNCA_19_P00315647	8.43463	P	8.356051	P	1.0559774303713	0	lncRNA	XR_110530	XR_110530	XR_110530	NA	NA	LOC100507165	uncharacterized LOC100507165	NA	THC2497699	NA	"PREDICTED: Homo sapiens hypothetical LOC100507165 (LOC100507165), miscRNA [XR_110530]"	chr11:121899093-121899034	hs|11q24.1	Agilent_HUMAN_G3V2	XR_110530	XR_110530	chr11	121899034	121899093	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009844	2.4096985	A	3.2179332	P	0.571080211599687	0	lncRNA	XR_109613	XR_109613	XR_109613	NA	Hs.729907	LOC100130157	uncharacterized LOC100130157	ENST00000424705	THC2484797	NA	"PREDICTED: Homo sapiens hypothetical LOC100130157 (LOC100130157), miscRNA [XR_109613]"	chr20:44076920-44076979	hs|20q13.12	Agilent_HUMAN_G3V2	XR_109613	XR_109613	chr20	 44076920	 44076979	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003953	0.91359633	A	0.9186694	A	0.996489791071232	0	lncRNA	ENST00000503188	NA	NA	NA	NA	XLOC_004265	NA	ENST00000503188	NA	NA	"BROAD Institute lincRNA (XLOC_004265), lincRNA [TCONS_00009333]"	chr5:4516803-4516862	hs|5p15.32	Agilent_HUMAN_G3V2	ENST00000503188	ENST00000503188	chr5	  4516803	  4516862	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34070_PI429285431	0.9159996	A	0.9288661	A	0.991121272575089	0	lncRNA	35599-1_{1..667}	n340893|Z83942|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3358|NULL|-1.1743900|-0.2669502	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340893|Z83942|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3358|NULL|-1.1743900|-0.2669502	chr6	 25698264	 25698930	+	NA	NA	NA	NA	SCGN	NA	chr6:25688264-25702011	inner
LNCA_21_P0008952	0.9072648	A	0.90467435	A	1.00179717610259	0	lncRNA	TCONS_00024427	NA	NA	NA	NA	XLOC_011744	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011744), lincRNA [TCONS_00024427]"	chr16:60855603-60855662	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024427	TCONS_00024427	chr16	 60855603	 60855662	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008133	4.2200665	P	4.2463512	P	0.981945799937854	0	lncRNA	TCONS_00021948	NA	NA	NA	NA	XLOC_010545	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010545), lincRNA [TCONS_00021948]"	chr13:28042607-28042548	hs|13q12.2	Agilent_HUMAN_G3V2	TCONS_00021948	TCONS_00021948	chr13	 28042548	 28042607	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014375	0.90610313	A	0.89519584	A	1.00758900897247	0	lncRNA	XR_109504	XR_109504	XR_109504	NA	NA	LOC100506523	uncharacterized LOC100506523	NA	THC2687467	NA	"PREDICTED: Homo sapiens hypothetical LOC100506523 (LOC100506523), miscRNA [XR_109504]"	chr19:58308603-58308662	hs|19q13.43	Agilent_HUMAN_G3V2	XR_109504	XR_109504	chr19	 58308603	 58308662	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014908	2.737553	A	2.6495347	A	1.06290915684352	0	lncRNA	XR_132913	XR_132913	XR_132913	NA	NA	LOC100653030	uncharacterized LOC100653030	NA	THC2478958	NA	"PREDICTED: Homo sapiens hypothetical LOC100653030 (LOC100653030), miscRNA [XR_132913]"	chr17:44577262-44577203	hs|17q21.31	Agilent_HUMAN_G3V2	XR_132913	XR_132913	chr17	 44577203	 44577262	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25358_PI429285431	2.894204	A	3.262755	P	0.774560051313211	0	lncRNA	26888-1_{1..373}	lnc-GPR144-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-GPR144-3:1	chr9	127027859	127028231	+	lnc-GPR144-3	lnc-GPR144-3:1	ENSG00000227200.1	RP11-121A14.3	NEK6	NA	chr9:127019885-127038088	inner
LNCA_21_P0011799	0.9125465	A	0.8916796	A	1.01456894027357	0	lncRNA	ENST00000420187	NA	NA	NA	NA	XLOC_l2_007286	NA	ENST00000420187	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007286), lincRNA [TCONS_l2_00013593]"	chr2:40982284-40982343	hs|2p22.1	Agilent_HUMAN_G3V2	ENST00000420187	ENST00000420187	chr2	 40982284	 40982343	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014076	5.4066978	P	6.188795	P	0.581520840123673	0	lncRNA	ENST00000420695	XR_108353	XR_108353	NA	NA	LOC100505623	NA	ENST00000420695	THC2524578	NA	"PREDICTED: Homo sapiens hypothetical LOC100505623 (LOC100505623), miscRNA [XR_108353]"	chr1:153507437-153507496	hs|1q21.3	Agilent_HUMAN_G3V2	ENST00000420695	ENST00000420695	chr1	153507437	153507496	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21157_PI429285431	0.92965347	A	0.9270417	A	1.00181198066836	0	lncRNA	22780-1_{1..566}	lnc-HSP90AA1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HSP90AA1-1:3	chr14	102510630	102511195	-	lnc-HSP90AA1-1	lnc-HSP90AA1-1:3	ENSG00000258959.1	RP11-1017G21.4	DYNC1H1	"hg19_refFlat_DYNC1H1:range=chr14:102431029-1025169005'pad=0,hg19_refFlat_DYNC1H1:range=chr14:102431029-1025169005'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90chr14:102500630-102517135"	NA	inner
LNCA_21_P0009769	3.758206	P	3.6623416	P	1.06870553804699	0	lncRNA	TCONS_00027368	NA	NA	NA	NA	XLOC_013350	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013350), lincRNA [TCONS_00027368]"	chr19:44405041-44388166	hs|19q13.31	Agilent_HUMAN_G3V2	TCONS_00027368	TCONS_00027368	chr19	 44388166	 44405041	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012302	6.720038	P	6.7813993	P	0.95835940258586	0	lncRNA	TCONS_l2_00018083	NA	NA	NA	NA	XLOC_l2_009578	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009578), lincRNA [TCONS_l2_00018083]"	chr22:45002187-45002128	hs|22q13.31	Agilent_HUMAN_G3V2	TCONS_l2_00018083	TCONS_l2_00018083	chr22	 45002128	 45002187	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009674	7.0908246	P	7.2314544	P	0.907123069650148	0	lncRNA	ENST00000426213	NA	NA	NA	NA	XLOC_013405	NA	ENST00000426213	NA	NA	"BROAD Institute lincRNA (XLOC_013405), lincRNA [TCONS_00026857]"	chr19:54703616-54703557	hs|19q13.42	Agilent_HUMAN_G3V2	ENST00000426213	ENST00000426213	chr19	 54703557	 54703616	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014446	2.314284	A	2.004447	A	1.23956764196802	0	lncRNA	ENST00000296575	XR_109840	XR_109840	NA	Hs.49265	HHIP	hedgehog interacting protein	ENST00000296575	THC2532571	GO:0005515|GO:0005886|GO:0009986|GO:0048705|GO:0005576|GO:0045879|GO:0009953|GO:0003824|GO:0046872|GO:0007405|GO:0005737|GO:0060441|GO:0040036|GO:0005887|GO:0008270|GO:0009968	"PREDICTED: Homo sapiens hypothetical LOC100505491 (LOC100505491), miscRNA [XR_109840]"	chr4:145666336-145666395	hs|4q31.21	Agilent_HUMAN_G3V2	ENST00000296575	ENST00000296575	chr4	145666336	145666395	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_207_PI429201921	0.9451191	A	0.9299464	A	1.01057241135111	0	lncRNA	164-2_{3001..5314}	TC12002317.hg.1	TCONS_l2_00006587-XLOC_l2_002952 // Broad TUCP // linc-CNTN1-1 chr12:+:40959313-40964560 // chr12 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00005598-XLOC_l2_002952 // Broad TUCP // linc-CNTN1-1 chr12:+:40959353-40964628 // chr12 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr12:+:40959313-40964560	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00006587-XLOC_l2_002952	linc-CNTN1-1	chr12	 40959313	 40964560	+	NA	NA	NA	NA	IGSF21	NA	chr1:18702323-18704977	Unknown
LNCA_21_P0007382	9.128493	P	8.924045	P	1.15224539348959	0	lncRNA	TCONS_00019731	NA	NA	NA	NA	XLOC_009524	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009524), lincRNA [TCONS_00019731]"	chr11:93932488-93932429	hs|11q21	Agilent_HUMAN_G3V2	TCONS_00019731	TCONS_00019731	chr11	 93932429	 93932488	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49194_PI429285431	6.2642984	P	6.5330563	P	0.830033862659976	0	lncRNA	53017-1_{1..543}	hg19_lincRNAsTranscripts_TCONS_l2_00021752 range=chr4:152182570-152184119 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00021752 range=chr4:152182570-152184119 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	152182570	152183112	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_12746_PI429285431	1.0087188	A	1.147063	A	0.908561324883078	0	lncRNA	14371-1_{1..855}	lnc-NAPB-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAPB-1:2	chr20	 23338358	 23339212	-	lnc-NAPB-1	lnc-NAPB-1:2	XLOC_013693	linc-CD93-1	GZF1	NA	chr20:23345021-23348763	inter
LNCA_21_P0014690	0.95377177	A	1.0104045	A	0.961505669815291	0	lncRNA	XR_111671	XR_111671	XR_111671	NA	NA	LOC100508869	uncharacterized LOC100508869	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100508869 (LOC100508869), miscRNA [XR_111671]"	chr17:15944662-15944721	hs|17p12	Agilent_HUMAN_G3V2	XR_111671	XR_111671	chr17	 15944662	 15944721	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30015_PI429285431	0.9276568	A	0.9218645	A	1.00402298698814	0	lncRNA	31783-1_{1..221}	n334449|U11875|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218063|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218063|-0.9116720|-0.1738542	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334449|U11875|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000218063|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000218063|-0.9116720|-0.1738542	chr2	218990752	218990972	+	NA	NA	NA	NA	CXCR2	NA	chr2:218990013-219001976	inner
LNCA_21_P0009748	0.9258637	A	3.378378	P	0.182692042358776	0	lncRNA	TCONS_00027240	NA	NA	NA	NA	XLOC_013274	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013274), lincRNA [TCONS_00027240]"	chr19:23452774-23452715	hs|19p12	Agilent_HUMAN_G3V2	TCONS_00027240	TCONS_00027240	chr19	 23452715	 23452774	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31255_PI429285431	6.612336	P	4.732097	P	3.68136041416416	0	lncRNA	33046-1_{1..1017}	n337711|CR617316|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|93|NULL|-1.0548000|-0.4775887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337711|CR617316|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|93|NULL|-1.0548000|-0.4775887	chr1	  9986450	  9987466	-	NA	NA	NA	NA	LZIC	"hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90chr1:9989776-9997467"	NA	inter
LNCA_21_P0005795	0.9124806	A	0.91633964	A	0.997328691615385	0	lncRNA	TCONS_00014926	NA	NA	NA	NA	XLOC_006997	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006997), lincRNA [TCONS_00014926]"	chr8:8844905-8844846	hs|8p23.1	Agilent_HUMAN_G3V2	TCONS_00014926	TCONS_00014926	chr8	  8844846	  8844905	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011422	0.9090558	A	0.9090526	A	1.00000221807344	0	lncRNA	TCONS_l2_00009650	NA	NA	NA	NA	XLOC_l2_005168	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005168), lincRNA [TCONS_l2_00009650]"	chr16:28270808-28301674	hs|16p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00009650	TCONS_l2_00009650	chr16	 28270808	 28301674	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7207_PI429285431	0.91761327	A	0.9920625	A	0.949704615423934	0	lncRNA	7621-1_{1..309}	"transcript_id ""ENST00000516424.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000516424.1"" | genecode_v17"	chr4	140715279	140715587	-	ENSG00000252233.1	ENST00000516424.1	RN7SKP253	RN7SKP253-201	MAML3	NA	chr4:140705279-140725587	inner
LNCA_19_P00320757	8.363342	P	8.529913	P	0.890957796555508	0	lncRNA	XR_108575	XR_108575	XR_108575	NA	Hs.535791	FLJ32255	uncharacterized LOC643977	NA	THC2604473	NA	"PREDICTED: Homo sapiens hypothetical LOC643977 (FLJ32255), miscRNA [XR_108575]"	chr5:42991133-42991074	hs|5p12	Agilent_HUMAN_G3V2	XR_108575	XR_108575	chr5	 42991074	 42991133	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16236_PI429285431	1.0688212	A	0.9249018	A	1.10490275474109	0	lncRNA	17943-1_{1..928}	lnc-AC008686.1-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC008686.1-1:3	chr19	 13783261	 13784188	-	lnc-AC008686.1-1	lnc-AC008686.1-1:3	XLOC_013238	linc-CACNA1A-3	NA	"hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-17.00;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.10;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80"	NA	inter
LNCA_21_P0003374	4.2044396	P	4.1883807	P	1.01119336336191	0	lncRNA	ENST00000507344	NA	NA	NA	NA	XLOC_003560	NA	ENST00000507344	NA	NA	"BROAD Institute lincRNA (XLOC_003560), lincRNA [TCONS_00007546]"	chr4:66725726-66725785	hs|4q13.2	Agilent_HUMAN_G3V2	ENST00000507344	ENST00000507344	chr4	 66725726	 66725785	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30639_PI429285431	8.9250555	P	9.07022	P	0.904276263651278	0	lncRNA	32421-1_{1..290}	n336002|X75691|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323543|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323543|-1.1194700|-0.2629837	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336002|X75691|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000323543|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000323543|-1.1194700|-0.2629837	chr8	103661002	103661291	-	NA	NA	NA	NA	KLF10	NA	chr8:103661005-103667983	inner
CUST_14856_PI429285431	6.924119	P	7.35298	P	0.742848028401948	0	lncRNA	16519-1_{1..836}	lnc-PFAS-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-PFAS-1:2	chr17	  8085980	  8086815	+	lnc-PFAS-1	lnc-PFAS-1:2	XLOC_012099	linc-PFAS-1	TMEM107	NA	chr17:8076296-8079714	inter
LNCA_21_P0003533	2.9043791	A	3.6927123	P	0.579012660834595	0	lncRNA	ENST00000514134	NA	NA	NA	NA	XLOC_004148	NA	ENST00000514134	NA	NA	"BROAD Institute lincRNA (XLOC_004148), lincRNA [TCONS_00007893]"	chr4:167309915-167309856	hs|4q32.3	Agilent_HUMAN_G3V2	ENST00000514134	ENST00000514134	chr4	167309856	167309915	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003334	1.0090622	A	1.9309949	A	0.527801479553146	0	lncRNA	ENST00000510095	NA	NA	NA	NA	XLOC_003457	NA	ENST00000510095	THC2783238	NA	"BROAD Institute lincRNA (XLOC_003457), lincRNA [TCONS_00007472]"	chr4:11815450-11815509	hs|4p15.33	Agilent_HUMAN_G3V2	ENST00000510095	ENST00000510095	chr4	 11815450	 11815509	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014492	8.842193	P	8.847093	P	0.996609340129227	0	lncRNA	XR_110080	XR_110080	XR_110080	NA	NA	LOC100289627	uncharacterized LOC100289627	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100289627 (LOC100289627), miscRNA [XR_110080]"	chr5:180669299-180670701	hs|5q35.3	Agilent_HUMAN_G3V2	XR_110080	XR_110080	chr5	180669299	180670701	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002669	11.14536	P	12.009075	P	0.54953565715743	0	lncRNA	TCONS_00005195	NA	NA	NA	NA	XLOC_002198	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002198), lincRNA [TCONS_00005195]"	chr2:88986931-88986872	hs|2p11.2	Agilent_HUMAN_G3V2	TCONS_00005195	TCONS_00005195	chr2	 88986872	 88986931	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004439	4.276232	P	4.4862633	P	0.864518474937992	0	lncRNA	TCONS_00010463	NA	NA	NA	NA	XLOC_004984	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004984), lincRNA [TCONS_00010463]"	chr5:125608380-125608321	hs|5q23.2	Agilent_HUMAN_G3V2	TCONS_00010463	TCONS_00010463	chr5	125608321	125608380	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004236	1.2202998	A	0.92213506	A	1.2295792637469	0	lncRNA	TCONS_00009905	NA	NA	NA	NA	XLOC_004316	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004316), lincRNA [TCONS_00009905]"	chr5:24321155-24321214	hs|5p14.2	Agilent_HUMAN_G3V2	TCONS_00009905	TCONS_00009905	chr5	 24321155	 24321214	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3501721	0.91332334	A	0.91789234	A	0.996838020153299	0	lncRNA	XR_109781	XR_109781	XR_109781	100126447	Hs.695847	LOC100126447	uncharacterized LOC100126447	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100126447 (LOC100126447), miscRNA [XR_109781]"	chrX:115945060-115945001	hs|Xq23	Agilent_HUMAN_G3V2	XR_109781	XR_109781	chrX	115945001	115945060	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011220	6.7086234	P	6.7515836	P	0.970661247282237	0	lncRNA	ENST00000413501	NA	NA	NA	NA	XLOC_l2_003911	NA	ENST00000413501	THC2533795	NA	"BROAD Institute lincRNA (XLOC_l2_003911), lincRNA [TCONS_l2_00007499]"	chr13:25747107-25747048	hs|13q12.13	Agilent_HUMAN_G3V2	ENST00000413501	ENST00000413501	chr13	 25747048	 25747107	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003301	1.5925272	A	0.9056846	A	1.60975663901274	0	lncRNA	TCONS_00007281	NA	NA	NA	NA	XLOC_003284	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003284), lincRNA [TCONS_00007281]"	chr3:150452545-150452486	hs|3q25.1	Agilent_HUMAN_G3V2	TCONS_00007281	TCONS_00007281	chr3	150452486	150452545	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52151_PI429285431	5.863192	P	6.0610094	P	0.871868583805426	0	lncRNA	55675-1_{1..690}	hg19_lincRNAsTranscripts_TCONS_l2_00017631 range=chr22:22012017-22016642 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017631 range=chr22:22012017-22016642 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr22	 22012017	 22012706	+	NA	NA	NA	NA	PPIL2	NA	chr22:22020273-22026642	inter
LNCA_21_P0012564	16.113647	P	16.150517	P	0.974767462385652	0	lncRNA	ENST00000445739	NA	NA	NA	NA	XLOC_l2_010508	NA	ENST00000445739	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010508), lincRNA [TCONS_l2_00020322]"	chr3:196713599-196711033	hs|3q29	Agilent_HUMAN_G3V2	ENST00000445739	ENST00000445739	chr3	196711033	196713599	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005538	0.9121876	A	0.8918731	A	1.01418054176646	0	lncRNA	TCONS_00013995	NA	NA	NA	NA	XLOC_006640	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006640), lincRNA [TCONS_00013995]"	chr7:149097328-149097269	hs|7q36.1	Agilent_HUMAN_G3V2	TCONS_00013995	TCONS_00013995	chr7	149097269	149097328	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002458	4.7977505	P	5.014705	P	0.860379765009831	0	lncRNA	TCONS_00004303	NA	NA	NA	NA	XLOC_002153	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002153), lincRNA [TCONS_00004303]"	chr2:71087976-71087917	hs|2p13.3	Agilent_HUMAN_G3V2	TCONS_00004303	TCONS_00004303	chr2	 71087917	 71087976	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005197	1.7466263	A	0.89586735	A	1.8034494056222	0	lncRNA	BC036261	NA	BC036261	NA	NA	XLOC_006449	NA	ENST00000439027	THC2606900	NA	"BROAD Institute lincRNA (XLOC_006449), lincRNA [TCONS_00012908]"	chr7:54646447-54646388	hs|7p11.2	Agilent_HUMAN_G3V2	BC036261	BC036261	chr7	 54646388	 54646447	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51882_PI429285431	1.2599165	A	0.90881467	A	1.2755344197735	0	lncRNA	55432-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00012690 range=chr19:53707069-53719341 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00012690 range=chr19:53707069-53719341 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr19	 53707069	 53710068	+	NA	NA	NA	NA	NA	"hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-38.42;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.60;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.50;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40"	NA	inter
CUST_32330_PI429285431	0.9202928	A	0.90549123	A	1.0103124773445	0	lncRNA	34012-1_{1..833}	n338909|S69115|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1335|NULL|3.7243600|-0.0477302	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338909|S69115|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1335|NULL|3.7243600|-0.0477302	chr19	 51874875	 51875707	-	NA	NA	NA	NA	CLDND2	NA	chr19:51870352-51872257	inner
LNCA_21_P0002218	2.7794676	A	3.626414	P	0.555960233792451	0	lncRNA	ENST00000496970	NA	NA	NA	NA	EML6	echinoderm microtubule associated protein like 6	ENST00000496970	NA	GO:0005737|GO:0005874|GO:0005856	"BROAD Institute lincRNA (XLOC_001478), lincRNA [TCONS_00003684]"	chr2:54951804-54951863	hs|2p16.2	Agilent_HUMAN_G3V2	ENST00000496970	ENST00000496970	chr2	 54951804	 54951863	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009208	1.3410857	A	1.0299431	A	1.24068992490604	0	lncRNA	TCONS_00025267	NA	NA	NA	NA	XLOC_012072	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012072), lincRNA [TCONS_00025267]"	chr17:896886-896945	hs|17p13.3	Agilent_HUMAN_G3V2	TCONS_00025267	TCONS_00025267	chr17	   896886	   896945	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19060_PI429285431	0.9261802	A	0.96710014	A	0.972034927972057	0	lncRNA	20751-1_{1..1014}	lnc-FAM27E1.1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>lnc-FAM27E1.1-2:2	chr9	 46274498	 46275511	-	lnc-FAM27E1.1-2	lnc-FAM27E1.1-2:2	ENSG00000225353	RP11-292F9.1	NA	"hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70"	NA	inter
LNCA_21_P0002494	0.9178261	A	1.2908411	A	0.772167104668276	0	lncRNA	TCONS_00004409	NA	NA	NA	NA	XLOC_002283	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002283), lincRNA [TCONS_00004409]"	chr2:114577169-114577110	hs|2q14.1	Agilent_HUMAN_G3V2	TCONS_00004409	TCONS_00004409	chr2	114577110	114577169	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012793	0.9113266	A	0.9137682	A	0.998309043125238	0	lncRNA	ENST00000509105	NA	NA	NA	NA	XLOC_l2_011263	NA	ENST00000509105	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011263), lincRNA [TCONS_l2_00021971]"	chr4:130669366-130669307	hs|4q28.2	Agilent_HUMAN_G3V2	ENST00000509105	ENST00000509105	chr4	130669307	130669366	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011448	6.68418	P	7.225598	P	0.687095243045003	0	lncRNA	TCONS_l2_00009861	NA	NA	NA	NA	XLOC_l2_005314	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005314), lincRNA [TCONS_l2_00009861]"	chr16:85391489-85391548	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_l2_00009861	TCONS_l2_00009861	chr16	 85391489	 85391548	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007893	3.2217083	P	3.6490786	P	0.74361599101837	0	lncRNA	THC2607120	NA	NA	NA	NA	XLOC_010212	NA	NA	THC2607120	NA	"BROAD Institute lincRNA (XLOC_010212), lincRNA [TCONS_00020941]"	chr12:118554217-118554158	hs|12q24.23	Agilent_HUMAN_G3V2	THC2607120	THC2607120	chr12	118554158	118554217	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013378	0.91614926	A	1.2297021	A	0.8046577341037	0	lncRNA	ENST00000445615	NA	NA	NA	NA	XLOC_l2_013390	NA	ENST00000445615	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013390), lincRNA [TCONS_l2_00027111]"	chr7:47022965-47023024	hs|7p12.3	Agilent_HUMAN_G3V2	ENST00000445615	ENST00000445615	chr7	 47022965	 47023024	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011716	3.09598	P	3.0162208	P	1.05684162857107	0	lncRNA	TCONS_l2_00012718	NA	NA	NA	NA	XLOC_l2_006832	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006832), lincRNA [TCONS_l2_00012718]"	chr19:56122951-56123010	hs|19q13.42	Agilent_HUMAN_G3V2	TCONS_l2_00012718	TCONS_l2_00012718	chr19	 56122951	 56123010	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009646	2.4076097	A	2.9757519	P	0.674484782943892	0	lncRNA	ENST00000549131	NA	BC128560	NA	NA	XLOC_012983	NA	ENST00000549131	NA	NA	"BROAD Institute lincRNA (XLOC_012983), lincRNA [TCONS_00026774]"	chr19:16127920-16127979	hs|19p13.12	Agilent_HUMAN_G3V2	ENST00000549131	ENST00000549131	chr19	 16127920	 16127979	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005781	4.341801	P	4.550116	P	0.865547560053523	0	lncRNA	TCONS_00014898	NA	NA	NA	NA	XLOC_006971	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006971), lincRNA [TCONS_00014898]"	chr8:1250432-1231016	hs|8p23.3	Agilent_HUMAN_G3V2	TCONS_00014898	TCONS_00014898	chr8	  1231016	  1250432	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013864	1.1623983	A	0.89923143	A	1.20011018565439	0	lncRNA	AK056524	NA	AK056524	NA	Hs.454295	XLOC_l2_015710	NA	NA	THC2513825	NA	"BROAD Institute lincRNA (XLOC_l2_015710), lincRNA [TCONS_l2_00030806]"	chrX:40671648-40671589	hs|Xp11.4	Agilent_HUMAN_G3V2	AK056524	AK056524	chrX	 40671589	 40671648	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012722	6.9177227	P	7.275208	P	0.780523892438525	0	lncRNA	ENST00000501725	NA	NA	NA	NA	XLOC_l2_010636	NA	ENST00000501725	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010636), lincRNA [TCONS_l2_00020480]"	chr4:37080246-37110952	hs|4p14	Agilent_HUMAN_G3V2	ENST00000501725	ENST00000501725	chr4	 37080246	 37110952	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008820	3.788381	P	3.5539033	P	1.17648073788073	0	lncRNA	TCONS_00023896	NA	NA	NA	NA	XLOC_011198	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011198), lincRNA [TCONS_00023896]"	chr15:30241048-30241233	hs|15q13.1	Agilent_HUMAN_G3V2	TCONS_00023896	TCONS_00023896	chr15	 30241048	 30241233	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004629	0.92717624	A	0.9806109	A	0.963639435479987	0	lncRNA	ENST00000422310	NA	NA	NA	NA	XLOC_005152	NA	ENST00000422310	NA	NA	"BROAD Institute lincRNA (XLOC_005152), lincRNA [TCONS_00011260]"	chr6:6901649-6901708	hs|6p25.1	Agilent_HUMAN_G3V2	ENST00000422310	ENST00000422310	chr6	  6901649	  6901708	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001596	0.9146186	A	1.920737	A	0.497884014213452	0	lncRNA	TCONS_00001714	NA	NA	NA	NA	XLOC_001081	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001081), lincRNA [TCONS_00001714]"	chr1:167498662-167498603	hs|1q24.2	Agilent_HUMAN_G3V2	TCONS_00001714	TCONS_00001714	chr1	167498603	167498662	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15460_PI429285431	0.91263795	A	1.4382485	A	0.694665064747679	0	lncRNA	17148-1_{1..385}	lnc-ZNF74-1:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ZNF74-1:11	chr22	 20853528	 20853912	+	lnc-ZNF74-1	lnc-ZNF74-1:11	XLOC_014159	linc-MED15	KLHL22	NA	chr22:20843528-20850170	inter
LNCA_33_P3245952	4.984005	P	5.3340325	P	0.784569142652263	0	lncRNA	XR_113199	XR_113199	XR_113199	   648570	Hs.689283	LOC648570	uncharacterized LOC648570	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC648570 (LOC648570), miscRNA [XR_113199]"	chr9:16786970-16786911	hs|9p22.2	Agilent_HUMAN_G3V2	XR_113199	XR_113199	chr9	 16786911	 16786970	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007824	0.90813434	A	1.0398325	A	0.912756435053904	0	lncRNA	TCONS_00021074	NA	NA	NA	NA	XLOC_009668	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009668), lincRNA [TCONS_00021074]"	chr12:12850770-12850829	hs|12p13.1	Agilent_HUMAN_G3V2	TCONS_00021074	TCONS_00021074	chr12	 12850770	 12850829	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012816	2.4068446	A	2.1263068	A	1.21464758972446	0	lncRNA	ENST00000508287	NA	NA	NA	NA	XLOC_l2_011407	NA	ENST00000508287	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011407), lincRNA [TCONS_l2_00022088]"	chr4:187349892-187348227	hs|4q35.2	Agilent_HUMAN_G3V2	ENST00000508287	ENST00000508287	chr4	187348227	187349892	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00320144	2.3925426	A	0.8921375	A	2.82922144140846	0	lncRNA	ENST00000502775	NA	BC131584	NA	NA	XLOC_003428	NA	ENST00000502775	NA	NA	"BROAD Institute lincRNA (XLOC_003428), lincRNA [TCONS_00007379]"	chr4:3589833-3589892	hs|4p16.3	Agilent_HUMAN_G3V2	ENST00000502775	ENST00000502775	chr4	  3589833	  3589892	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00322929	5.935718	P	6.1987967	P	0.83330774841241	0	lncRNA	ENST00000513179	XR_108544	XR_108544	NA	NA	XLOC_003870	0	ENST00000513179	THC2679376	NA	"PREDICTED: Homo sapiens hypothetical LOC100507376, transcript variant 2 (LOC100507376), miscRNA [XR_108544]"	chr4:6675534-6675475	hs|4p16.1	Agilent_HUMAN_G3V2	ENST00000513179	ENST00000513179	chr4	  6675475	  6675534	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003844	0.9195458	A	0.8953402	A	1.01691958525429	0	lncRNA	ENST00000504132	NA	NA	NA	NA	XLOC_003636	NA	ENST00000504132	THC2653827	NA	"BROAD Institute lincRNA (XLOC_003636), lincRNA [TCONS_00008867]"	chr4:107374494-107374553	hs|4q24	Agilent_HUMAN_G3V2	ENST00000504132	ENST00000504132	chr4	107374494	107374553	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27389_PI429285431	0.9235146	A	1.0805767	A	0.896849554444394	0	lncRNA	28951-1_{1..2777}	n324551|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000140988|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000140988|-0.0604668|-0.3264485	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324551|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000140988|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000140988|-0.0604668|-0.3264485	chr6	 29605175	 29607951	+	NA	NA	NA	NA	MOG	"hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-62.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-32.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-81.60;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-41.40;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-78.30;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-40.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-33.60;hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0,hg19_refFlat_RPGRIP1L:range=chr16:53635988-537346355'pad=0 3'pad=0 strand=- repeatMasking=none,-41.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-75.90;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.00;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-80.80;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70chr6:29603231-29619324"	NA	inter
LNCA_33_P3359864	0.9219693	A	0.8986522	A	1.01629349667874	0	lncRNA	XR_109717	XR_109717	XR_109717	   200317	Hs.297397	FLJ23865	uncharacterized protein FLJ23865	NA	THC2487597	NA	"PREDICTED: Homo sapiens hypothetical protein FLJ23865 (FLJ23865), miscRNA [XR_109717]"	chr22:39570101-39570042	hs|22q13.1	Agilent_HUMAN_G3V2	XR_109717	XR_109717	chr22	 39570042	 39570101	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008650	0.9219152	A	0.9008689	A	1.01469511037879	0	lncRNA	THC2703155	NA	NA	NA	NA	XLOC_011296	NA	NA	THC2703155	NA	"BROAD Institute lincRNA (XLOC_011296), lincRNA [TCONS_00023451]"	chr15:069964181-069964240	hs|15q23	Agilent_HUMAN_G3V2	THC2703155	THC2703155	chr15	 69964181	 69964240	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11787_PI429285431	1.102815	A	0.91253173	A	1.14098772430751	0	lncRNA	13368-1_{1..736}	lnc-C20orf78-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C20orf78-3:1	chr20	 19190708	 19191443	-	lnc-C20orf78-3	lnc-C20orf78-3:1	XLOC_013670	linc-RBBP9-2	SLC24A3	NA	chr20:19193290-19200824	inter
CUST_24928_PI429285431	1.5805767	A	0.95845485	A	1.53913721017538	0	lncRNA	26468-1_{1..244}	lnc-AP001496.1-11:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP001496.1-11:1	chr18	  5960627	  5960870	+	lnc-AP001496.1-11	lnc-AP001496.1-11:1	ENSG00000265487.1	RP11-793A3.1	L3MBTL4	NA	chr18:5954705-5970784	inner
LNCA_21_P0010344	4.5895023	P	3.983769	P	1.5217520401726	0	lncRNA	TCONS_00029369	NA	NA	NA	NA	XLOC_014172	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014172), lincRNA [TCONS_00029369]"	chr22:23855495-23855554	hs|22q11.23	Agilent_HUMAN_G3V2	TCONS_00029369	TCONS_00029369	chr22	 23855495	 23855554	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3364761	1.0102551	A	1.0262928	A	0.988945073278026	0	lncRNA	ENST00000375625	XR_113305	XR_113305	NA	Hs.553803	NA	NA	ENST00000375625	THC2485612	NA	"PREDICTED: Homo sapiens hypothetical LOC401589 (LOC401589), miscRNA [XR_113305]"	chrX:51945945-51946004	hs|Xp11.22	Agilent_HUMAN_G3V2	ENST00000375625	ENST00000375625	chrX	 51945945	 51946004	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011542	5.088107	P	4.8800583	P	1.15512477659665	0	lncRNA	TCONS_l2_00010770	NA	NA	NA	NA	XLOC_l2_005781	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005781), lincRNA [TCONS_l2_00010770]"	chr17:39272482-39272541	hs|17q21.2	Agilent_HUMAN_G3V2	TCONS_l2_00010770	TCONS_l2_00010770	chr17	 39272482	 39272541	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014640	2.7178497	A	3.3064346	P	0.664994862476644	0	lncRNA	ENST00000521141	XR_110867	XR_110867	NA	NA	LOC100507139	NA	ENST00000521141	THC2619069	NA	"PREDICTED: Homo sapiens hypothetical LOC100507139 (LOC100507139), miscRNA [XR_110867]"	chr8:22615643-22615702	hs|8p21.3	Agilent_HUMAN_G3V2	ENST00000521141	ENST00000521141	chr8	 22615643	 22615702	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22412_PI429285431	4.021505	P	3.83045	P	1.1415982275548	0	lncRNA	24001-1_{1..476}	lnc-HRASLS-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HRASLS-1:1	chr3	193031833	193032308	+	lnc-HRASLS-1	lnc-HRASLS-1:1	ENSG00000236508.1	ATP13A5-AS1	ATP13A5	"hg19_refFlat_ATP13A5:range=chr3:192992831-1930965145'pad=0,hg19_refFlat_ATP13A5:range=chr3:192992831-1930965145'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60chr3:193021833-193042151"	NA	inner
LNCA_21_P0010353	4.6982465	P	4.8477726	P	0.901546556197942	0	lncRNA	ENST00000430449	NA	NA	NA	NA	XLOC_014211	NA	ENST00000430449	NA	NA	"BROAD Institute lincRNA (XLOC_014211), lincRNA [TCONS_00029412]"	chr22:32366222-32366281	hs|22q12.3	Agilent_HUMAN_G3V2	ENST00000430449	ENST00000430449	chr22	 32366222	 32366281	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007584	3.6384442	P	4.040395	P	0.756834206241507	0	lncRNA	TCONS_00020476	NA	NA	NA	NA	XLOC_009810	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009810), lincRNA [TCONS_00020476]"	chr12:76646252-76685907	hs|12q21.2	Agilent_HUMAN_G3V2	TCONS_00020476	TCONS_00020476	chr12	 76646252	 76685907	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0000934	0.91346216	A	0.9178251	A	0.996980408604457	0	lncRNA	BC037540	NA	BC037540	NA	Hs.382067	XLOC_000967	NA	NA	THC2538063	NA	"BROAD Institute lincRNA (XLOC_000967), lincRNA [TCONS_00000096]"	chr1:113554963-113554904	hs|1p13.2	Agilent_HUMAN_G3V2	BC037540	BC037540	chr1	113554904	113554963	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002583	0.90698206	A	0.8966145	A	1.0072121280052	0	lncRNA	TCONS_00004738	NA	NA	NA	NA	XLOC_001412	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001412), lincRNA [TCONS_00004738]"	chr2:30555436-30572845	hs|2p23.1	Agilent_HUMAN_G3V2	TCONS_00004738	TCONS_00004738	chr2	 30555436	 30572845	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_217_PI429201921	4.163309	P	4.5922728	P	0.74279509825766	0	lncRNA	170-2_{3001..5518}	TC10002745.hg.1	TCONS_l2_00003662-XLOC_l2_002043 // Broad TUCP // linc-LRIT1-1 chr10:-:86953175-86955677 // chr10 // 100 // 100 // 0 // --- // 0 /// TCONS_l2_00004225-XLOC_l2_002043 // Broad TUCP // linc-LRIT1-1 chr10:-:86953176-86958694 // chr10 // 100 // 100 // 0 // --- // 0/// TCONS_l2_00004224-XLOC_l2_002043 // Broad TUCP // linc-LRIT1-1 chr10:-:86953176-86957714 // chr10 // 100 // 100 // 0 // --- // 0 	NA	NA	NA	NA	NA	NA	NA	NA	chr10:-:86953175-86955677	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00003662-XLOC_l2_002043	linc-LRIT1-1	chr10	 86953175	 86955677	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014104	2.1863427	A	1.2782456	A	1.87656869043973	0	lncRNA	XR_108451	XR_108451	XR_108451	NA	NA	LOC100505507	uncharacterized LOC100505507	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505507 (LOC100505507), miscRNA [XR_108451]"	chr2:241401629-241398574	hs|2q37.3	Agilent_HUMAN_G3V2	XR_108451	XR_108451	chr2	241398574	241401629	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15252_PI429285431	3.027432	P	2.3793242	A	1.5671114660768	0	lncRNA	16923-1_{1..373}	lnc-RALB-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RALB-2:3	chr2	121085426	121085798	+	lnc-RALB-2	lnc-RALB-2:3	XLOC_001640	linc-INHBB	NA	NA	NA	inter
CUST_20062_PI429285431	6.602424	P	6.707722	P	0.92961290392841	0	lncRNA	21713-1_{1..2403}	lnc-C6orf221-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C6orf221-2:2	chr6	 74008780	 74011182	+	lnc-C6orf221-2	lnc-C6orf221-2:2	ENSG00000229852.2	RP11-398K22.12	NA	"hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-44.90;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.50;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-44.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-49.90;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50"	NA	inter
CUST_32257_PI429285431	3.3515148	P	3.194507	A	1.11497224686238	0	lncRNA	33947-1_{1..2027}	n338832|AK024868|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1255|NULL|0.2724690|-0.2883712	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338832|AK024868|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1255|NULL|0.2724690|-0.2883712	chr12	  1420757	  1422783	+	NA	NA	NA	NA	ERC1	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90chr12:1410757-1432780"	NA	inner
CUST_32835_PI429285431	0.9281007	A	1.0336334	A	0.929461685274171	0	lncRNA	34469-1_{1..332}	n339488|AJ001869|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1928|NULL|-0.7446780|-0.2171821	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339488|AJ001869|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1928|NULL|-0.7446780|-0.2171821	chr21	 38751126	 38751457	+	NA	NA	NA	NA	DYRK1A	NA	chr21:38741126-38761431	inner
LNCA_21_P0012318	3.8841448	P	3.537858	P	1.2712843886732	0	lncRNA	ENST00000449711	NA	NA	NA	NA	XLOC_l2_009320	NA	ENST00000449711	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009320), lincRNA [TCONS_l2_00018190]"	chr22:23777125-23777184	hs|22q11.23	Agilent_HUMAN_G3V2	ENST00000449711	ENST00000449711	chr22	 23777125	 23777184	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13127_PI429285431	3.5940514	P	3.1886296	A	1.32447609017963	0	lncRNA	14755-1_{1..776}	lnc-LGALS12-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-LGALS12-2:1	chr11	 63267874	 63268649	+	lnc-LGALS12-2	lnc-LGALS12-2:1	XLOC_009152	linc-LGALS12	HRASLS5	NA	chr11:63257874-63258680	inter
CUST_32600_PI429285431	5.776602	P	4.1770334	P	3.03052679820272	0	lncRNA	34261-1_{1..712}	n339221|BC015447|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1653|NULL|-1.2159700|-0.3830038	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339221|BC015447|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1653|NULL|-1.2159700|-0.3830038	chr16	 56974939	 56975650	+	NA	NA	NA	NA	HERPUD1	NA	chr16:56965748-56977793	inner
LNCA_21_P0009087	3.0936575	P	4.0671787	P	0.509261584998855	0	lncRNA	TCONS_00024774	NA	NA	NA	NA	XLOC_012049	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012049), lincRNA [TCONS_00024774]"	chr16:86962076-86962017	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024774	TCONS_00024774	chr16	 86962017	 86962076	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007213	5.0819807	P	5.284227	P	0.869196156385395	0	lncRNA	TCONS_00019309	NA	NA	NA	NA	XLOC_009142	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009142), lincRNA [TCONS_00019309]"	chr11:60447477-60454422	hs|11q12.2	Agilent_HUMAN_G3V2	TCONS_00019309	TCONS_00019309	chr11	 60447477	 60454422	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001278	0.9069929	A	0.89900005	A	1.00555559685023	0	lncRNA	TCONS_00000877	NA	NA	NA	NA	XLOC_000115	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000115), lincRNA [TCONS_00000877]"	chr1:30185025-30185084	hs|1p35.3	Agilent_HUMAN_G3V2	TCONS_00000877	TCONS_00000877	chr1	 30185025	 30185084	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26832_PI429285431	0.9284857	A	0.9340579	A	0.996145094578777	0	lncRNA	28346-3_{6001..7619}	n323903|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056029|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056029|0.3319580|-0.3342359	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323903|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000056029|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000056029|0.3319580|-0.3342359	chrX	 21827638	 21829256	+	NA	NA	NA	NA	NA	"hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0,hg19_refFlat_RAB43:range=chr3:128811357-1288403325'pad=0 3'pad=0 strand=- repeatMasking=none,-73.10;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-31.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.10;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-70.10;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-50.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.00;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-65.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.10;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.70;hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0,hg19_refFlat_MAD2L1BP:range=chr6:43597487-436082705'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.60"	NA	inter
LNCA_21_P0010290	4.649968	P	4.879094	P	0.853151583546737	0	lncRNA	THC2703954	NA	NA	NA	NA	XLOC_014105	NA	NA	THC2703954	NA	"BROAD Institute lincRNA (XLOC_014105), lincRNA [TCONS_00029161]"	chr21:044859635-044859576	hs|21q22.3	Agilent_HUMAN_G3V2	THC2703954	THC2703954	chr21	 44859576	 44859635	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001811	11.735626	P	11.875433	P	0.907640568996539	0	lncRNA	TCONS_00003548	NA	NA	NA	NA	XLOC_001320	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001320), lincRNA [TCONS_00003548]"	chr2:2876304-2876363	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00003548	TCONS_00003548	chr2	  2876304	  2876363	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004934	0.9099575	A	0.8928789	A	1.01190832967566	0	lncRNA	TCONS_00011943	NA	NA	NA	NA	XLOC_005452	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005452), lincRNA [TCONS_00011943]"	chr6:122283230-122283289	hs|6q22.31	Agilent_HUMAN_G3V2	TCONS_00011943	TCONS_00011943	chr6	122283230	122283289	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014566	5.7231174	P	5.849028	P	0.916425431378606	0	lncRNA	XR_110325	XR_110325	XR_110325	NA	NA	LOC100507559	uncharacterized LOC100507559	NA	THC2676954	NA	"PREDICTED: Homo sapiens hypothetical LOC100507559 (LOC100507559), miscRNA [XR_110325]"	chr12:87724765-87724824	hs|12q21.32	Agilent_HUMAN_G3V2	XR_110325	XR_110325	chr12	 87724765	 87724824	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3818_PI429285431	0.92685187	A	0.9263484	A	1.00034903971119	0	lncRNA	3786-1_{1..310}	"transcript_id ""ENST00000434988.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000434988.1"" | genecode_v17"	chr10	123374939	123375248	-	ENSG00000223432.1	ENST00000434988.1	RP11-62L18.3	RP11-62L18.3-001	NA	NA	NA	inter
CUST_3343_PI429285431	1.1327767	A	0.9473325	A	1.13716704849996	0	lncRNA	3321-1_{1..3000}	"transcript_id ""ENST00000560295.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000560295.1"" | genecode_v17"	chr8	141530255	141533254	-	ENSG00000259758.1	ENST00000560295.1	CTA-204B4.6	CTA-204B4.6-001	EIF2C2	NA	chr8:141541264-141549600	inter
LNCA_21_P0003276	0.92271364	A	0.89971054	A	1.01607232628313	0	lncRNA	TCONS_00007086	NA	NA	NA	NA	XLOC_003007	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003007), lincRNA [TCONS_00007086]"	chr3:196420051-196420110	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00007086	TCONS_00007086	chr3	196420051	196420110	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012099	0.920501	A	0.9023922	A	1.01263117145661	0	lncRNA	ENST00000451851	NA	AL137596	NA	Hs.636452	XLOC_l2_008363	NA	ENST00000451851	NP1167883	NA	"BROAD Institute lincRNA (XLOC_l2_008363), lincRNA [TCONS_l2_00016032]"	chr2:177626195-177626136	hs|2q31.1	Agilent_HUMAN_G3V2	ENST00000451851	ENST00000451851	chr2	177626136	177626195	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19465_PI429285431	0.9523566	A	1.0797153	A	0.915506034119561	0	lncRNA	21124-1_{1..110}	lnc-MAST4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MAST4-1:1	chr5	 65881703	 65881812	+	lnc-MAST4-1	lnc-MAST4-1:1	ENSG00000250595.1	RP11-5P22.2	NA	NA	NA	inter
LNCA_33_P3376454	1.0040414	A	1.03277	A	0.980283809129356	0	lncRNA	XR_108564	XR_108564	XR_108564	100133299	Hs.679984	LOC100133299	GALI1870	NA	THC2489700	NA	"PREDICTED: Homo sapiens GALI1870 (LOC100133299), miscRNA [XR_108564]"	chr5:14342798-14342857	hs|5p15.2	Agilent_HUMAN_G3V2	XR_108564	XR_108564	chr5	 14342798	 14342857	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012314	2.454373	A	3.0456219	A	0.66376805317144	0	lncRNA	TCONS_l2_00018162	NA	NA	NA	NA	XLOC_l2_009302	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009302), lincRNA [TCONS_l2_00018162]"	chr22:20339943-20340002	hs|22q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00018162	TCONS_l2_00018162	chr22	 20339943	 20340002	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3376531	0.93326056	A	1.6306533	A	0.61668568379063	0	lncRNA	XR_110460	XR_110460	XR_110460	100129413	NA	LOC100129413	uncharacterized LOC100129413	NA	THC2646304	NA	"PREDICTED: Homo sapiens hypothetical LOC100129413 (LOC100129413), miscRNA [XR_110460]"	chr10:119805235-119805294	hs|10q26.11	Agilent_HUMAN_G3V2	XR_110460	XR_110460	chr10	119805235	119805294	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014433	0.91027325	A	0.91072166	A	0.999689234170472	0	lncRNA	XR_109766	XR_109766	XR_109766	NA	NA	LOC100506800	uncharacterized LOC100506800	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506800 (LOC100506800), miscRNA [XR_109766]"	chrX:77084528-77084587	hs|Xq21.1	Agilent_HUMAN_G3V2	XR_109766	XR_109766	chrX	 77084528	 77084587	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2745_PI429285431	5.992298	P	6.378985	P	0.7648840664156	0	lncRNA	2729-1_{1..380}	"transcript_id ""ENST00000524978.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000524978.1"" | genecode_v17"	chr7	  1609870	  1610249	+	ENSG00000230487.3	ENST00000524978.1	PSMG3-AS1	PSMG3-AS1-007	PSMG3	NA	chr7:1606968-1609668	inter
LNCA_21_P0003336	3.822627	P	3.3679245	P	1.37050016323733	0	lncRNA	ENST00000514103	NA	NA	NA	NA	XLOC_003458	NA	ENST00000514103	NA	NA	"BROAD Institute lincRNA (XLOC_003458), lincRNA [TCONS_00007478]"	chr4:11921253-11921312	hs|4p15.33	Agilent_HUMAN_G3V2	ENST00000514103	ENST00000514103	chr4	 11921253	 11921312	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23809_PI429285431	1.5761776	A	0.93197286	A	1.56287754030116	0	lncRNA	25374-1_{1..399}	lnc-TIMM9-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIMM9-1:1	chr14	 58862019	 58862417	-	lnc-TIMM9-1	lnc-TIMM9-1:1	ENSG00000258658.1	RP11-517O13.3	TOMM20L	NA	chr14:58862644-58872359	inter
CUST_8350_PI429285431	1.7969666	A	0.91708755	A	1.84022101773456	0	lncRNA	9929-1_{1..2572}	lnc-AC005323.1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC005323.1.1-1:2	chr17	 10527405	 10529976	+	lnc-AC005323.1.1-1	lnc-AC005323.1.1-1:2	ENSG00000249095	AC005323.1	MYH3	NA	chr17:10531843-10537704	inter
LNCA_21_P0010048	5.889582	P	6.0530987	P	0.89284602304026	0	lncRNA	TCONS_00028422	NA	NA	NA	NA	XLOC_013773	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013773), lincRNA [TCONS_00028422]"	chr20:46749869-46749810	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028422	TCONS_00028422	chr20	 46749810	 46749869	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012906	0.9210191	A	0.8966621	A	1.01702630892054	0	lncRNA	ENST00000508123	NA	NA	NA	NA	XLOC_l2_012023	NA	ENST00000508123	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012023), lincRNA [TCONS_l2_00022887]"	chr5:44776132-44776073	hs|5p12	Agilent_HUMAN_G3V2	ENST00000508123	ENST00000508123	chr5	 44776073	 44776132	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014416	0.9230173	A	0.96529704	A	0.971119176312662	0	lncRNA	XR_109685	XR_109685	XR_109685	NA	NA	LOC100505827	uncharacterized LOC100505827	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505827 (LOC100505827), miscRNA [XR_109685]"	chr21:46798156-46798097	hs|21q22.3	Agilent_HUMAN_G3V2	XR_109685	XR_109685	chr21	 46798097	 46798156	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_497_PI429285431	8.892704	P	8.89715	P	0.996923011298264	0	lncRNA	488-1_{1..542}	"transcript_id ""ENST00000435023.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000435023.1"" | genecode_v17"	chr1	181143620	181144161	+	ENSG00000237292.1	ENST00000435023.1	RP11-540K16.1	RP11-540K16.1-001	NA	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10"	NA	inter
LNCA_21_P0002683	0.92231977	A	0.902001	A	1.01418354348006	0	lncRNA	TCONS_00005278	NA	NA	NA	NA	XLOC_002392	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002392), lincRNA [TCONS_00005278]"	chr2:173188639-173188580	hs|2q31.1	Agilent_HUMAN_G3V2	TCONS_00005278	TCONS_00005278	chr2	173188580	173188639	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002349	3.6530848	P	4.458824	P	0.572068891741799	0	lncRNA	TCONS_00004018	NA	NA	NA	NA	XLOC_001856	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001856), lincRNA [TCONS_00004018]"	chr2:217385430-217385489	hs|2q35	Agilent_HUMAN_G3V2	TCONS_00004018	TCONS_00004018	chr2	217385430	217385489	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003624	0.920634	A	0.9026263	A	1.01256021160614	0	lncRNA	TCONS_00008129	NA	NA	NA	NA	XLOC_003586	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003586), lincRNA [TCONS_00008129]"	chr4:80319310-80320316	hs|4q21.21	Agilent_HUMAN_G3V2	TCONS_00008129	TCONS_00008129	chr4	 80319310	 80320316	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004800	0.9189609	A	0.90276337	A	1.01129053460552	0	lncRNA	ENST00000451328	NA	NA	NA	NA	XLOC_005913	NA	ENST00000451328	THC2654930	NA	"BROAD Institute lincRNA (XLOC_005913), lincRNA [TCONS_00011611]"	chr6:164529711-164529652	hs|6q27	Agilent_HUMAN_G3V2	ENST00000451328	ENST00000451328	chr6	164529652	164529711	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001546	2.5679386	A	2.5626292	A	1.00368697587542	0	lncRNA	TCONS_00001582	NA	NA	NA	NA	XLOC_000915	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000915), lincRNA [TCONS_00001582]"	chr1:91302891-91302832	hs|1p22.2	Agilent_HUMAN_G3V2	TCONS_00001582	TCONS_00001582	chr1	 91302832	 91302891	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8989_PI429285431	1.1975865	A	1.0430912	A	1.11303217652864	0	lncRNA	10521-1_{1..3000}	lnc-C6orf94-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-C6orf94-1:1	chr6	144325474	144328473	+	lnc-C6orf94-1	lnc-C6orf94-1:1	ENSG00000246840	AL109755.1	PLAGL1	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-51.90;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-75.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.80chr6:144315474-144339867"	NA	inner
LNCA_21_P0003135	5.213327	P	5.105618	P	1.07751578190807	0	lncRNA	THC2663748	NA	NA	NA	NA	XLOC_003175	NA	NA	THC2663748	NA	"BROAD Institute lincRNA (XLOC_003175), lincRNA [TCONS_00006552]"	chr3:086254533-086254474	hs|3p12.1	Agilent_HUMAN_G3V2	THC2663748	THC2663748	chr3	 86254474	 86254533	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005494	2.0854979	A	3.0169687	P	0.524323531431732	0	lncRNA	ENST00000440935	NA	NA	NA	NA	XLOC_006433	NA	ENST00000440935	THC2783229	NA	"BROAD Institute lincRNA (XLOC_006433), lincRNA [TCONS_00013797]"	chr7:46521104-46521045	hs|7p12.3	Agilent_HUMAN_G3V2	ENST00000440935	ENST00000440935	chr7	 46521045	 46521104	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30247_PI429285431	2.0559793	A	2.8587513	A	0.573246680210894	0	lncRNA	32022-1_{1..525}	n335123|AY130006|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250762|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250762|-0.9499050|-0.1278663	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335123|AY130006|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250762|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250762|-0.9499050|-0.1278663	chr12	119594330	119594854	+	NA	NA	NA	NA	SRRM4	NA	chr12:119584330-119600856	inner
CUST_9181_PI429285431	1.4944348	A	0.9343749	A	1.47433042950637	0	lncRNA	10696-1_{1..2211}	lnc-ZBED4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-ZBED4-1:1	chr22	 50296445	 50298655	+	lnc-ZBED4-1	lnc-ZBED4-1:1	ENSG00000248043	AL671710.1	ALG12	"hg19_refFlat_ALG12:range=chr22:50297486-503074135'pad=0,hg19_refFlat_ALG12:range=chr22:50297486-503074135'pad=0 3'pad=0 strand=- repeatMasking=none,-100.40chr22:50296852-50308224"	NA	inner
LNCA_21_P0008638	3.149187	P	3.9991727	P	0.554790235090077	0	lncRNA	TCONS_00023428	NA	NA	NA	NA	XLOC_011271	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011271), lincRNA [TCONS_00023428]"	chr15:60544766-60546124	hs|15q22.2	Agilent_HUMAN_G3V2	TCONS_00023428	TCONS_00023428	chr15	 60544766	 60546124	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34484_PI429285431	5.929923	P	5.9002676	P	1.02076827738734	0	lncRNA	35952-1_{1..1792}	n341361|BC015321|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3830|NULL|1.0573300|-0.1415829	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341361|BC015321|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3830|NULL|1.0573300|-0.1415829	chr7	150928544	150930335	-	NA	NA	NA	NA	ABCF2	NA	chr7:150918544-150924317	inner
LNCA_21_P0001160	1.6259291	A	1.1409941	A	1.39952280928091	0	lncRNA	ENST00000421185	NA	NA	NA	NA	XLOC_000939	NA	ENST00000421185	NA	NA	"BROAD Institute lincRNA (XLOC_000939), lincRNA [TCONS_00000587]"	chr1:100730660-100729565	hs|1p21.2	Agilent_HUMAN_G3V2	ENST00000421185	ENST00000421185	chr1	100729565	100730660	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009919	1.0105563	A	1.0302734	A	0.986426115145808	0	lncRNA	ENST00000441277	NA	NA	NA	NA	XLOC_013817	NA	ENST00000441277	NA	NA	"BROAD Institute lincRNA (XLOC_013817), lincRNA [TCONS_00028075]"	chr20:56644169-56644110	hs|20q13.32	Agilent_HUMAN_G3V2	ENST00000441277	ENST00000441277	chr20	 56644110	 56644169	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47275_PI429285431	1.0997428	A	1.0650034	A	1.02437176979053	0	lncRNA	51345-1_{1..1624}	"gi|224493699|ref|NR_027124.1| Homo sapiens uncharacterized LOC339568 (LOC339568), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|224493699|ref|NR_027124.1| Homo sapiens uncharacterized LOC339568 (LOC339568), non-coding RNA"	Chr20	 37842424	 37844047	-	339568	NR_027124.1	NA	NA	NA	NA	NA	inter
LNCA_23_P50052	11.234516	P	10.756334	P	1.39298719880233	0	lncRNA	XR_109479	XR_109479	XR_109479	    84322	Hs.334493	C18orf12	chromosome 18 open reading frame 12	NA	NP340945	NA	"PREDICTED: Homo sapiens chromosome 18 open reading frame 12 (C18orf12), miscRNA [XR_109479]"	chr18:45778947-45779006	hs|18q21.1	Agilent_HUMAN_G3V2	XR_109479	XR_109479	chr18	 45778947	 45779006	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20241_PI429285431	5.2350864	P	5.289839	P	0.962759527391096	0	lncRNA	21884-1_{1..391}	lnc-C17orf63-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C17orf63-3:1	chr17	 27069928	 27070318	-	lnc-C17orf63-3	lnc-C17orf63-3:1	ENSG00000265073.1	AC010761.6	NEK8	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.60;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0,hg19_refFlat_LOC284385:range=chr19:9732229-97430485'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10chr17:27059928-27069784"	NA	inter
LNCA_21_P0000980	1.7337689	A	1.2308198	A	1.41710739838874	0	lncRNA	ENST00000450811	NA	NA	NA	NA	XLOC_000229	NA	ENST00000450811	NA	NA	"BROAD Institute lincRNA (XLOC_000229), lincRNA [TCONS_00000215]"	chr1:63367251-63367310	hs|1p31.3	Agilent_HUMAN_G3V2	ENST00000450811	ENST00000450811	chr1	 63367251	 63367310	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006009	2.4590414	A	1.1024811	A	2.56073914979246	0	lncRNA	ENST00000422554	NA	NA	NA	NA	XLOC_007350	NA	ENST00000422554	NA	NA	"BROAD Institute lincRNA (XLOC_007350), lincRNA [TCONS_00015669]"	chr9:38375512-38375571	hs|9p13.2	Agilent_HUMAN_G3V2	ENST00000422554	ENST00000422554	chr9	 38375512	 38375571	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013061	0.90990484	A	0.9093311	A	1.00039776535104	0	lncRNA	TCONS_l2_00024609	NA	NA	NA	NA	XLOC_l2_012871	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012871), lincRNA [TCONS_l2_00024609]"	chr6:10470504-10467045	hs|6p24.3	Agilent_HUMAN_G3V2	TCONS_l2_00024609	TCONS_l2_00024609	chr6	 10467045	 10470504	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010417	6.829099	P	6.424631	P	1.32360073692959	0	lncRNA	TCONS_00029597	NA	NA	NA	NA	XLOC_014246	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014246), lincRNA [TCONS_00029597]"	chr22:39674006-39674065	hs|22q13.1	Agilent_HUMAN_G3V2	TCONS_00029597	TCONS_00029597	chr22	 39674006	 39674065	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001989	7.10663	P	7.3006525	P	0.87416498699165	0	lncRNA	ENST00000427019	NA	NA	NA	NA	XLOC_001938	NA	ENST00000427019	NA	NA	"BROAD Institute lincRNA (XLOC_001938), lincRNA [TCONS_00003147]"	chr2:916706-907037	hs|2p25.3	Agilent_HUMAN_G3V2	ENST00000427019	ENST00000427019	chr2	   907037	   916706	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006888	0.90902984	A	0.89439255	A	1.01019743939144	0	lncRNA	TCONS_00018256	NA	NA	NA	NA	XLOC_008538	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008538), lincRNA [TCONS_00018256]"	chr10:86335399-86335458	hs|10q23.1	Agilent_HUMAN_G3V2	TCONS_00018256	TCONS_00018256	chr10	 86335399	 86335458	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29029_PI429285431	0.930391	A	1.1166639	A	0.878873297632275	0	lncRNA	30758-1_{1..845}	n326519|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030085|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030085|-1.3369800|-0.3550334	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326519|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000030085|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000030085|-1.3369800|-0.3550334	chr1	 95594378	 95595222	-	NA	NA	NA	NA	TMEM56-RWDD3	NA	chr1:95584378-95629116	inner
LNCA_21_P0010544	0.9139426	A	0.8929961	A	1.01462492016768	0	lncRNA	TCONS_l2_00000482	NA	NA	NA	NA	XLOC_l2_000353	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000353), lincRNA [TCONS_l2_00000482]"	chr1:110969504-110969563	hs|1p13.3	Agilent_HUMAN_G3V2	TCONS_l2_00000482	TCONS_l2_00000482	chr1	110969504	110969563	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00318790	2.4619699	A	2.957358	A	0.709370824286583	0	lncRNA	ENST00000454172	NA	NA	NA	NA	XLOC_l2_013052	NA	ENST00000454172	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013052), lincRNA [TCONS_l2_00025431]"	chr6:85265856-85265797	hs|6q14.3	Agilent_HUMAN_G3V2	ENST00000454172	ENST00000454172	chr6	 85265797	 85265856	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005368	5.1606426	P	5.8656545	P	0.613437428697186	0	lncRNA	TCONS_00013404	NA	NA	NA	NA	XLOC_006035	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006035), lincRNA [TCONS_00013404]"	chr7:30444133-30444192	hs|7p14.3	Agilent_HUMAN_G3V2	TCONS_00013404	TCONS_00013404	chr7	 30444133	 30444192	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004121	11.711417	P	11.583062	P	1.09304666899915	0	lncRNA	ENST00000511579	NA	NA	NA	NA	XLOC_004774	NA	ENST00000511579	THC2647432	NA	"BROAD Institute lincRNA (XLOC_004774), lincRNA [TCONS_00009634]"	chr5:33520050-33519991	hs|5p13.3	Agilent_HUMAN_G3V2	ENST00000511579	ENST00000511579	chr5	 33519991	 33520050	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002277	1.7512689	A	1.0338025	A	1.64429186166984	0	lncRNA	THC2755124	NA	NA	NA	NA	XLOC_001640	NA	NA	THC2755124	NA	"BROAD Institute lincRNA (XLOC_001640), lincRNA [TCONS_00003831]"	chr2:121085463-121085522	hs|2q14.2	Agilent_HUMAN_G3V2	THC2755124	THC2755124	chr2	121085463	121085522	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008047	0.9991194	A	1.0327065	A	0.976988103408363	0	lncRNA	TCONS_00021749	NA	NA	NA	NA	XLOC_010341	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010341), lincRNA [TCONS_00021749]"	chr13:35075056-35075454	hs|13q13.2	Agilent_HUMAN_G3V2	TCONS_00021749	TCONS_00021749	chr13	 35075056	 35075454	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3216625	1.7306476	A	1.002405	A	1.65661987231445	0	lncRNA	XR_112792	XR_112792	XR_112792	100128482	Hs.711349	LOC100128482	uncharacterized LOC100128482	NA	THC2487320	NA	"PREDICTED: Homo sapiens hypothetical LOC100128482 (LOC100128482), miscRNA [XR_112792]"	chr5:172093389-172093448	hs|5q35.1	Agilent_HUMAN_G3V2	XR_112792	XR_112792	chr5	172093389	172093448	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004185	0.9278151	A	0.9836242	A	0.962054747055531	0	lncRNA	ENST00000504297	NA	NA	NA	NA	XLOC_005047	NA	ENST00000504297	THC2693316	NA	"BROAD Institute lincRNA (XLOC_005047), lincRNA [TCONS_00010527]"	chr5:146560246-146560187	hs|5q32	Agilent_HUMAN_G3V2	ENST00000504297	ENST00000504297	chr5	146560187	146560246	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011466	3.813205	P	4.0702915	P	0.836776070403064	0	lncRNA	XR_132609	XR_132609	XR_132609	NA	NA	LOC100652752	e3 ubiquitin-protein ligase HERC2-like	NA	NA	NA	"PREDICTED: Homo sapiens e3 ubiquitin-protein ligase HERC2-like (LOC100652752), miscRNA [XR_132609]"	chr16:32165138-32164258	hs|16p11.2	Agilent_HUMAN_G3V2	XR_132609	XR_132609	chr16	 32164258	 32165138	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008365	0.91201735	A	0.9143062	A	0.998414747917365	0	lncRNA	TCONS_00022579	NA	NA	NA	NA	XLOC_010892	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010892), lincRNA [TCONS_00022579]"	chr14:86798804-86798863	hs|14q31.3	Agilent_HUMAN_G3V2	TCONS_00022579	TCONS_00022579	chr14	 86798804	 86798863	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_24_P303874	13.079876	P	13.362137	P	0.822301291565633	0	lncRNA	XR_109856	XR_109856	XR_109856	   157927	Hs.559511	C9orf62	chromosome 9 open reading frame 62	ENST00000320778	THC2486045	NA	"PREDICTED: Homo sapiens chromosome 9 open reading frame 62 (C9orf62), miscRNA [XR_109856]"	chr9:138236188-138236247	hs|9q34.3	Agilent_HUMAN_G3V2	XR_109856	XR_109856	chr9	138236188	138236247	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_247_PI429201921	0.92437845	A	0.9288575	A	0.996900173534776	0	lncRNA	187-2_{3001..6000}	TC0X001962.hg.1	TCONS_00017032-XLOC_008105 // Rinn lincRNAs // linc-PRKX-3 chrX:-:4545240-4551613 // chrX // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chrX:-:4545240-4551613	NA	Affy_HUMAN_HTA2.0	TCONS_00017032-XLOC_008105	linc-PRKX-3	chrX	  4545240	  4551613	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_6724_PI429285431	0.9463304	A	0.93167716	A	1.01020860789052	0	lncRNA	6672-1_{1..459}	"transcript_id ""ENST00000426963.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000426963.1"" | genecode_v17"	chr20	 51474877	 51475335	-	ENSG00000232286.1	ENST00000426963.1	RP11-80K6.2	RP11-80K6.2-001	NA	NA	NA	inter
CUST_22017_PI429285431	0.92497647	A	0.90654474	A	1.01285786218208	0	lncRNA	23626-1_{1..1005}	lnc-C7orf62-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C7orf62-2:2	chr7	 89840614	 89841618	-	lnc-C7orf62-2	lnc-C7orf62-2:2	ENSG00000227646.3	STEAP2-AS1	STEAP2	NA	chr7:89841000-89850949	inter
LNCA_21_P0003014	2.700087	A	2.1997092	A	1.41458395239478	0	lncRNA	TCONS_00006167	NA	NA	NA	NA	XLOC_002772	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002772), lincRNA [TCONS_00006167]"	chr3:117381083-117381142	hs|3q13.32	Agilent_HUMAN_G3V2	TCONS_00006167	TCONS_00006167	chr3	117381083	117381142	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14972_PI429285431	1.0907277	A	0.92671156	A	1.12040174850154	0	lncRNA	16634-1_{1..924}	lnc-CNST-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-CNST-1:2	chr1	246854770	246855693	+	lnc-CNST-1	lnc-CNST-1:2	XLOC_000642	linc-SCCPDH	NA	NA	NA	inter
CUST_13136_PI429285431	0.94271195	A	0.94362664	A	0.999366186150324	0	lncRNA	14764-1_{1..421}	lnc-ANKRD18B-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ANKRD18B-2:1	chr9	 33502630	 33503050	+	lnc-ANKRD18B-2	lnc-ANKRD18B-2:1	XLOC_007322	linc-PRSS3-5	NA	"hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-38.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.40"	NA	inter
LNCA_19_P00318255	1.1929839	A	1.8373144	A	0.639789623835213	0	lncRNA	ENST00000455390	NA	NA	NA	NA	XLOC_005539	NA	ENST00000455390	THC2691172	NA	"BROAD Institute lincRNA (XLOC_005539), lincRNA [TCONS_00011414]"	chr6:167317975-167318034	hs|6q27	Agilent_HUMAN_G3V2	ENST00000455390	ENST00000455390	chr6	167317975	167318034	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010062	6.311169	P	5.672798	P	1.55657058560945	0	lncRNA	TCONS_00028448	NA	NA	NA	NA	XLOC_013807	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013807), lincRNA [TCONS_00028448]"	chr20:54717546-54717487	hs|20q13.2	Agilent_HUMAN_G3V2	TCONS_00028448	TCONS_00028448	chr20	 54717487	 54717546	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36620_PI429285431	11.6131935	P	12.345086	P	0.602113554425318	0	lncRNA	37814-1_{1..1319}	n345117|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_666|NULL|-1.4995100|-0.3024739	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345117|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_666|NULL|-1.4995100|-0.3024739	chr10	 62563747	 62565065	+	NA	NA	NA	NA	CDK1	NA	chr10:62553747-62554610	inter
CUST_47533_PI429285431	2.6020536	A	2.3382492	A	1.2006406340866	0	lncRNA	51544-1_{1..1651}	"gi|224451004|ref|NR_027034.1| Homo sapiens uncharacterized LOC150381 (LOC150381), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224451004|ref|NR_027034.1| Homo sapiens uncharacterized LOC150381 (LOC150381), non-coding RNA"	Chr22	 46449726	 46451376	+	150381	NR_027034.1	NA	NA	NA	"hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0,hg19_refFlat_C22orf26:range=chr22:46447707-464499735'pad=0 3'pad=0 strand=- repeatMasking=none,-104.80"	NA	inter
LNCA_21_P0006659	0.9181166	A	0.926366	A	0.99429826857203	0	lncRNA	ENST00000427232	NA	NA	NA	NA	XLOC_008406	NA	ENST00000427232	NA	NA	"BROAD Institute lincRNA (XLOC_008406), lincRNA [TCONS_00017796]"	chr10:19036673-19036732	hs|10p12.31	Agilent_HUMAN_G3V2	ENST00000427232	ENST00000427232	chr10	 19036673	 19036732	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38567_PI429285431	3.396371	P	3.756462	P	0.779115434318897	0	lncRNA	39579-1_{1..2995}	n383521|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002pda.1||-0.0188235|-0.2441422	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n383521|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002pda.1||-0.0188235|-0.2441422	chr19	 46217644	 46220638	-	NA	NA	NA	NA	FBXO46	"hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.70;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.90;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-75.70;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.60chr19:46213887-46230639"	NA	inner
CUST_2097_PI429285431	4.954933	P	4.980153	P	0.982670737319976	0	lncRNA	2088-1_{1..529}	"transcript_id ""ENST00000503267.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000503267.1"" | genecode_v17"	chr5	 17444119	 17444647	+	ENSG00000249662.1	ENST00000503267.1	RP11-321E2.4	RP11-321E2.4-002	NA	NA	NA	inter
LNCA_21_P0006190	4.0568466	P	4.554638	P	0.708190109268086	0	lncRNA	TCONS_00016096	NA	NA	NA	NA	XLOC_007488	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007488), lincRNA [TCONS_00016096]"	chr9:102299323-102299382	hs|9q22.33	Agilent_HUMAN_G3V2	TCONS_00016096	TCONS_00016096	chr9	102299323	102299382	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25213_PI429285431	0.9297292	A	0.9299839	A	0.99982347099619	0	lncRNA	26744-1_{1..541}	lnc-ARAP2-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ARAP2-2:1	chr4	 36393703	 36394243	-	lnc-ARAP2-2	lnc-ARAP2-2:1	ENSG00000251438.1	RP11-431M7.2	NA	NA	NA	inter
CUST_7646_PI429285431	4.78301	P	6.0741115	P	0.408638913671334	0	lncRNA	9278-1_{1..1981}	lnc-RTN2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RTN2-1:1	chr19	 45978387	 45980367	-	lnc-RTN2-1	lnc-RTN2-1:1	ENSG00000248000	AC138128.1	FOSB	NA	chr19:45971253-45978437	inner
CUST_43933_PI429285431	6.2220283	P	6.2282944	P	0.995666089066691	0	lncRNA	48643-1_{1..2334}	"gi|373938440|ref|NR_046111.1| Homo sapiens uncharacterized LOC440894 (LOC440894), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373938440|ref|NR_046111.1| Homo sapiens uncharacterized LOC440894 (LOC440894), transcript variant 2, non-coding RNA"	Chr2	110744557	110746890	+	440894	NR_046111.1	NA	NA	NA	"hg19_refFlat_ZBTB45:range=chr19:59025421-590290405'pad=0,hg19_refFlat_ZBTB45:range=chr19:59025421-590290405'pad=0 3'pad=0 strand=- repeatMasking=none,-101.60"	NA	inter
LNCA_21_P0012115	4.832044	P	4.9169545	P	0.942843024948097	0	lncRNA	TCONS_l2_00016220	NA	NA	NA	NA	XLOC_l2_008599	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008599), lincRNA [TCONS_l2_00016220]"	chr20:25990402-25990461	hs|20p11.1	Agilent_HUMAN_G3V2	TCONS_l2_00016220	TCONS_l2_00016220	chr20	 25990402	 25990461	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001649	4.45218	P	4.9735107	P	0.696728894212417	0	lncRNA	TCONS_00001895	NA	NA	NA	NA	XLOC_001280	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001280), lincRNA [TCONS_00001895]"	chr1:242692740-242692681	hs|1q43	Agilent_HUMAN_G3V2	TCONS_00001895	TCONS_00001895	chr1	242692681	242692740	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012970	0.92369694	A	0.90268016	A	1.01467434819942	0	lncRNA	ENST00000503113	NA	NA	NA	NA	XLOC_l2_011910	NA	ENST00000503113	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011910), lincRNA [TCONS_l2_00023633]"	chr5:1544320-1544261	hs|5p15.33	Agilent_HUMAN_G3V2	ENST00000503113	ENST00000503113	chr5	  1544261	  1544320	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34396_PI429285431	0.92539394	A	0.92344695	A	1.00135046168232	0	lncRNA	35879-1_{1..235}	n341266|AF345626|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3734|NULL|-1.1846900|-0.2485137	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341266|AF345626|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3734|NULL|-1.1846900|-0.2485137	chr7	 86312690	 86312924	-	NA	NA	NA	NA	GRM3	NA	chr7:86302690-86322855	inner
CUST_38121_PI429285431	4.4248004	P	4.135068	P	1.22241351584194	0	lncRNA	39195-1_{1..3000}	n381231|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001elb.3||-1.2080400|-0.3648869	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n381231|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001elb.3||-1.2080400|-0.3648869	chr1	144514873	144517872	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003063	1.0111564	A	1.0321927	A	0.985524539605323	0	lncRNA	TCONS_00006315	NA	NA	NA	NA	XLOC_002925	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002925), lincRNA [TCONS_00006315]"	chr3:174455622-174455681	hs|3q26.31	Agilent_HUMAN_G3V2	TCONS_00006315	TCONS_00006315	chr3	174455622	174455681	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004000	2.344382	A	1.0340779	A	2.47993808116032	0	lncRNA	ENST00000512349	NA	NA	NA	NA	XLOC_004385	NA	ENST00000512349	NA	NA	"BROAD Institute lincRNA (XLOC_004385), lincRNA [TCONS_00009401]"	chr5:54350861-54350920	hs|5q11.2	Agilent_HUMAN_G3V2	ENST00000512349	ENST00000512349	chr5	 54350861	 54350920	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002879	1.0074792	A	1.034769	A	0.981261933993341	0	lncRNA	XR_108489	XR_108489	XR_108489	NA	Hs.669052	LOC100507210	uncharacterized LOC100507210	ENST00000483245	THC2679770	NA	"PREDICTED: Homo sapiens hypothetical LOC100507210 (LOC100507210), miscRNA [XR_108489]"	chr3:133774159-133774100	hs|3q22.2	Agilent_HUMAN_G3V2	XR_108489	XR_108489	chr3	133774100	133774159	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005789	0.987126	A	1.0282567	A	0.971892935997222	0	lncRNA	ENST00000518926	NA	NA	NA	NA	XLOC_006981	NA	ENST00000518926	THC2698620	NA	"BROAD Institute lincRNA (XLOC_006981), lincRNA [TCONS_00014914]"	chr8:5517339-5517280	hs|8p23.2	Agilent_HUMAN_G3V2	ENST00000518926	ENST00000518926	chr8	  5517280	  5517339	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27143_PI429285431	4.819744	P	5.3200793	P	0.706942460004663	0	lncRNA	28679-1_{1..637}	n324259|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322894|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322894|-1.0997900|-0.1164825	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324259|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000322894|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000322894|-1.0997900|-0.1164825	chr7	  1744791	  1745427	-	NA	NA	NA	NA	ELFN1	NA	chr7:1748798-1758434	inter
CUST_45496_PI429285431	5.0314856	P	3.9768112	P	2.07724934193935	0	lncRNA	49909-1_{1..3000}	"gi|395865395|ref|NR_073040.1| Homo sapiens neuroepithelial cell transforming 1 (NET1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|395865395|ref|NR_073040.1| Homo sapiens neuroepithelial cell transforming 1 (NET1), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NR_073040.1	NA	NA	NA	NA	NA	Unknown
CUST_26975_PI429285431	1.7142531	A	1.6862668	A	1.01958800082591	0	lncRNA	28501-1_{1..328}	n324062|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052782|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052782|-0.8584770|-0.2068146	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324062|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000052782|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000052782|-0.8584770|-0.2068146	chr9	 81310538	 81310865	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006278	0.9145649	A	0.9193808	A	0.996667437846425	0	lncRNA	TCONS_00016357	NA	NA	NA	NA	XLOC_007737	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007737), lincRNA [TCONS_00016357]"	chr9:76026548-76026489	hs|9q21.13	Agilent_HUMAN_G3V2	TCONS_00016357	TCONS_00016357	chr9	 76026489	 76026548	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002302	0.91408944	A	0.91836625	A	0.997039930875942	0	lncRNA	TCONS_00003910	NA	NA	NA	NA	XLOC_001716	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001716), lincRNA [TCONS_00003910]"	chr2:156844305-156844364	hs|2q24.1	Agilent_HUMAN_G3V2	TCONS_00003910	TCONS_00003910	chr2	156844305	156844364	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001455	1.8867881	A	4.6061115	P	0.151845556895995	0	lncRNA	TCONS_00001368	NA	NA	NA	NA	XLOC_000669	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000669), lincRNA [TCONS_00001368]"	chr1:843524-843465	hs|1p36.33	Agilent_HUMAN_G3V2	TCONS_00001368	TCONS_00001368	chr1	   843465	   843524	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014613	0.9104829	A	0.9101584	A	1.0002249515579	0	lncRNA	XR_110539	XR_110539	XR_110539	NA	NA	LOC100507510	uncharacterized LOC100507510	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507510 (LOC100507510), miscRNA [XR_110539]"	chr11:134056045-134056104	hs|11q25	Agilent_HUMAN_G3V2	XR_110539	XR_110539	chr11	134056045	134056104	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42985_PI429285431	6.270559	P	6.599785	P	0.79596340034014	0	lncRNA	46141-1_{1..131}	ENST00000516910 ncrna:snoRNA chromosome:GRCh37:X:138992063:138992193:1 gene:ENSG00000252719 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516910 ncrna:snoRNA chromosome:GRCh37:X:138992063:138992193:1 gene:ENSG00000252719 gene_biotype:snoRNA transcript_biotype:snoRNA	chrX	138992063	138992193	+	ENSG00000252719	ENST00000516910	NA	NA	NA	NA	NA	inter
LNCA_21_P0012668	3.535147	P	3.462189	P	1.05187115649402	0	lncRNA	TCONS_l2_00021167	NA	NA	NA	NA	XLOC_l2_011145	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011145), lincRNA [TCONS_l2_00021167]"	chr4:68286466-68286407	hs|4q13.2	Agilent_HUMAN_G3V2	TCONS_l2_00021167	TCONS_l2_00021167	chr4	 68286407	 68286466	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002591	5.477871	P	5.543537	P	0.955504120643875	0	lncRNA	TCONS_00004770	NA	NA	NA	NA	XLOC_001453	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001453), lincRNA [TCONS_00004770]"	chr2:45402459-45402518	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00004770	TCONS_00004770	chr2	 45402459	 45402518	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00322733	3.3058078	P	2.926542	A	1.30067975978952	0	lncRNA	BC032741	NA	BC032741	NA	NA	XLOC_l2_015585	NA	NA	THC2503862	NA	"BROAD Institute lincRNA (XLOC_l2_015585), lincRNA [TCONS_l2_00030733]"	chrX:102120185-102120244	hs|Xq22.1	Agilent_HUMAN_G3V2	BC032741	BC032741	chrX	102120185	102120244	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19901_PI429285431	4.3104677	P	4.653321	P	0.788480346360746	0	lncRNA	21556-1_{1..851}	lnc-SRGAP3-1:18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRGAP3-1:18	chr3	  9438232	  9439082	-	lnc-SRGAP3-1	lnc-SRGAP3-1:18	ENSG00000206573.4	RP11-58B17.1	LOC100652926	NA	chr3:9435634-9438752	inter
CUST_12282_PI429285431	2.196604	A	1.555361	A	1.559672366148	0	lncRNA	13891-1_{1..1686}	lnc-WDR48-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-WDR48-1:1	chr3	 38866675	 38868360	+	lnc-WDR48-1	lnc-WDR48-1:1	XLOC_002615	linc-WDR48	NA	NA	NA	inter
CUST_8490_PI429285431	6.2084546	P	6.270083	P	0.958181988721653	0	lncRNA	10054-1_{1..770}	lnc-NBAS-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-NBAS-4:2	chr2	 16081654	 16082423	-	lnc-NBAS-4	lnc-NBAS-4:2	ENSG00000233718	MYCNOS	MYCN	NA	chr2:16080683-16087129	inner
LNCA_21_P0009397	1.6040255	A	2.4843397	A	0.543249105870295	0	lncRNA	THC2677011	NA	NA	NA	NA	XLOC_012324	NA	NA	THC2677011	NA	"BROAD Institute lincRNA (XLOC_012324), lincRNA [TCONS_00025984]"	chr17:076360663-076360722	hs|17q25.3	Agilent_HUMAN_G3V2	THC2677011	THC2677011	chr17	 76360663	 76360722	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22532_PI429285431	3.0349967	A	3.2193055	P	0.88007061969845	0	lncRNA	24120-1_{1..298}	lnc-NEO1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NEO1-1:2	chr15	 73634654	 73634951	+	lnc-NEO1-1	lnc-NEO1-1:2	ENSG00000259650.1	RP11-272D12.1	HCN4	NA	chr15:73624654-73644728	inner
CUST_27365_PI429285431	3.9425402	P	3.512555	P	1.34721975623548	0	lncRNA	28928-1_{1..400}	n324527|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040437|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040437|-1.2140800|-0.4105369	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324527|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000040437|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000040437|-1.2140800|-0.4105369	chr6	 38789804	 38790203	+	NA	NA	NA	NA	DNAH8	NA	chr6:38779804-38800971	inner
CUST_42301_PI429285431	4.6316895	P	4.3776956	P	1.1925038301779	0	lncRNA	44917-1_{1..74}	ENST00000580478 ncrna:snoRNA chromosome:GRCh37:HG79_PATCH:136225630:136225703:1 gene:ENSG00000265941 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000580478 ncrna:snoRNA chromosome:GRCh37:HG79_PATCH:136225630:136225703:1 gene:ENSG00000265941 gene_biotype:snoRNA transcript_biotype:snoRNA	chrHG79_PATCH	136225630	136225703	+	ENSG00000265941	ENST00000580478	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001674	0.97641397	A	1.2260208	A	0.841125611507055	0	lncRNA	TCONS_00001990	NA	NA	NA	NA	XLOC_000153	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000153), lincRNA [TCONS_00001990]"	chr1:39513771-39513830	hs|1p34.3	Agilent_HUMAN_G3V2	TCONS_00001990	TCONS_00001990	chr1	 39513771	 39513830	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3242109	3.534119	P	2.9428427	A	1.50657897383744	0	lncRNA	ENST00000503602	XR_109115	XR_109115	NA	Hs.721298	NA	NA	ENST00000503602	THC2647510	NA	"PREDICTED: Homo sapiens hypothetical LOC100130219 (LOC100130219), miscRNA [XR_109115]"	chr12:1084586-1084527	hs|12p13.33	Agilent_HUMAN_G3V2	ENST00000503602	ENST00000503602	chr12	  1084527	  1084586	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009988	4.414359	P	5.31065	P	0.537266205771893	0	lncRNA	TCONS_00028254	NA	NA	NA	NA	XLOC_013596	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013596), lincRNA [TCONS_00028254]"	chr20:60695578-60695637	hs|20q13.33	Agilent_HUMAN_G3V2	TCONS_00028254	TCONS_00028254	chr20	 60695578	 60695637	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005064	0.90853935	A	0.9034275	A	1.00354954919699	0	lncRNA	TCONS_00012300	NA	NA	NA	NA	XLOC_005856	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005856), lincRNA [TCONS_00012300]"	chr6:139778335-139778276	hs|6q24.1	Agilent_HUMAN_G3V2	TCONS_00012300	TCONS_00012300	chr6	139778276	139778335	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37323_PI429285431	4.4631405	P	3.5496647	P	1.8835780296152	0	lncRNA	38429-1_{1..466}	n345766|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1315|NULL|-1.2965500|-0.2815766	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345766|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1315|NULL|-1.2965500|-0.2815766	chr7	 72593258	 72593723	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_19850_PI429285431	3.8627357	P	3.810655	P	1.03675909256777	0	lncRNA	21507-1_{1..572}	lnc-NNT-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NNT-2:1	chr5	 43521660	 43522231	+	lnc-NNT-2	lnc-NNT-2:1	ENSG00000248554.1	RP11-159F24.6	PAIP1	NA	chr5:43511660-43531913	inter
LNCA_21_P0008212	0.9103639	A	0.8945274	A	1.01103749391999	0	lncRNA	TCONS_00022107	NA	NA	NA	NA	XLOC_010718	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010718), lincRNA [TCONS_00022107]"	chr13:110054534-110054475	hs|13q33.3	Agilent_HUMAN_G3V2	TCONS_00022107	TCONS_00022107	chr13	110054475	110054534	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014138	0.9125818	A	0.8936246	A	1.01322684061717	0	lncRNA	ENST00000511639	XR_108558	XR_108558	NA	NA	MTRR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	ENST00000511639	NA	GO:0050661|GO:0005506|GO:0010181|GO:0050660|GO:0005730|GO:0008652|GO:0009086|GO:0005634|GO:0005829|GO:0005737|GO:0030586|GO:0016491|GO:0006555|GO:0016723|GO:0045111|GO:0055114	"PREDICTED: Homo sapiens hypothetical LOC100288963, transcript variant 1 (LOC100288963), miscRNA [XR_108558]"	chr5:7861720-7861779	hs|5p15.31	Agilent_HUMAN_G3V2	ENST00000511639	ENST00000511639	chr5	  7861720	  7861779	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1443_PI429285431	3.3504577	P	3.578051	P	0.854058442060136	0	lncRNA	1432-1_{1..303}	"transcript_id ""ENST00000492981.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000492981.1"" | genecode_v17"	chr3	113465719	113466021	-	ENSG00000242659.1	ENST00000492981.1	RP11-271C24.2	RP11-271C24.2-001	ATP6V1A	NA	chr3:113465866-113476255	inner
LNCA_21_P0006527	0.9140464	A	2.5138524	A	0.329921339415451	0	lncRNA	TCONS_00017292	NA	NA	NA	NA	XLOC_008114	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008114), lincRNA [TCONS_00017292]"	chrX:13268865-13268806	hs|Xp22.2	Agilent_HUMAN_G3V2	TCONS_00017292	TCONS_00017292	chrX	 13268806	 13268865	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32719_PI429285431	9.419553	P	9.184931	P	1.17659841670824	0	lncRNA	34362-1_{1..3000}	n339350|D83782|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1782|NULL|17.4385000|-0.1270985	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339350|D83782|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1782|NULL|17.4385000|-0.1270985	chr3	 47455202	 47458201	-	NA	NA	NA	NA	PTPN23	NA	chr3:47445202-47454931	inner
LNCA_21_P0009719	1.5237398	A	0.89689046	A	1.5441889987944	0	lncRNA	TCONS_00027008	NA	NA	NA	NA	XLOC_013054	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013054), lincRNA [TCONS_00027008]"	chr19:36812167-36812226	hs|19q13.12	Agilent_HUMAN_G3V2	TCONS_00027008	TCONS_00027008	chr19	 36812167	 36812226	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013010	0.92283577	A	1.3935449	A	0.721609816648516	0	lncRNA	TCONS_l2_00024003	NA	NA	NA	NA	XLOC_l2_012374	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012374), lincRNA [TCONS_l2_00024003]"	chr6:5906757-5907354	hs|6p25.1	Agilent_HUMAN_G3V2	TCONS_l2_00024003	TCONS_l2_00024003	chr6	  5906757	  5907354	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16880_PI429285431	4.717217	P	5.214027	P	0.708672022771409	0	lncRNA	18589-1_{1..471}	lnc-IVNS1ABP-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-IVNS1ABP-2:5	chr1	185597539	185598009	-	lnc-IVNS1ABP-2	lnc-IVNS1ABP-2:5	XLOC_001126	linc-IVNS1ABP	NA	NA	NA	inter
LNCA_21_P0008804	4.698105	P	4.4392962	P	1.19649038216223	0	lncRNA	TCONS_00023841	NA	NA	NA	NA	XLOC_011615	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011615), lincRNA [TCONS_00023841]"	chr15:102040617-102040558	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_00023841	TCONS_00023841	chr15	102040558	102040617	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009034	0.92465895	A	0.90216744	A	1.01571208363104	0	lncRNA	THC2733456	NA	NA	NA	NA	XLOC_011946	NA	NA	THC2733456	NA	"BROAD Institute lincRNA (XLOC_011946), lincRNA [TCONS_00024659]"	chr16:054304519-054304460	hs|16q12.2	Agilent_HUMAN_G3V2	THC2733456	THC2733456	chr16	 54304460	 54304519	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42440_PI429285431	3.6457572	P	3.5076303	P	1.10047540334065	0	lncRNA	45165-1_{1..126}	ENST00000516848 ncrna:snoRNA chromosome:GRCh37:17:28104637:28104762:1 gene:ENSG00000252657 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000516848 ncrna:snoRNA chromosome:GRCh37:17:28104637:28104762:1 gene:ENSG00000252657 gene_biotype:snoRNA transcript_biotype:snoRNA	chr17	 28104637	 28104762	+	ENSG00000252657	ENST00000516848	NA	NA	SSH2	NA	chr17:28094637-28114762	inner
LNCA_21_P0014064	1.2637565	A	2.1008809	A	0.559758175692829	0	lncRNA	XR_108326	XR_108326	XR_108326	NA	NA	LOC100506573	uncharacterized LOC100506573	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506573 (LOC100506573), miscRNA [XR_108326]"	chr1:201378008-201378067	hs|1q32.1	Agilent_HUMAN_G3V2	XR_108326	XR_108326	chr1	201378008	201378067	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005386	0.94693047	A	1.0073359	A	0.95899458224424	0	lncRNA	TCONS_00013467	NA	NA	NA	NA	XLOC_006118	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006118), lincRNA [TCONS_00013467]"	chr7:63176072-63176131	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_00013467	TCONS_00013467	chr7	 63176072	 63176131	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_248_PI429285431	0.92651796	A	0.9355078	A	0.993788091926678	0	lncRNA	240-1_{1..171}	"transcript_id ""ENST00000422198.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000422198.1"" | genecode_v17"	chr1	 59520069	 59520239	-	ENSG00000241042.1	ENST00000422198.1	RP11-145M4.1	RP11-145M4.1-001	NA	NA	NA	inter
LNCA_21_P0011980	2.150283	A	2.5027215	A	0.783259083053633	0	lncRNA	ENST00000419719	NA	NA	NA	NA	XLOC_l2_008381	NA	ENST00000419719	THC2642498	NA	"BROAD Institute lincRNA (XLOC_l2_008381), lincRNA [TCONS_l2_00015025]"	chr2:186903120-186903061	hs|2q32.1	Agilent_HUMAN_G3V2	ENST00000419719	ENST00000419719	chr2	186903061	186903120	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29803_PI429285431	6.2516985	P	6.0102053	P	1.18221563031977	0	lncRNA	31566-1_{1..482}	n333512|BC037578|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000094895|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000094895|0.7273530|-0.0174924	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333512|BC037578|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000094895|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000094895|0.7273530|-0.0174924	chr12	106641277	106641758	-	NA	NA	NA	NA	CKAP4	NA	chr12:106631659-106641713	inner
CUST_44454_PI429285431	0.9148139	A	0.91526735	A	0.999685741800431	0	lncRNA	49059-1_{1..3000}	"gi|359279889|ref|NR_045583.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 12, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|359279889|ref|NR_045583.1| Homo sapiens relaxin/insulin-like family peptide receptor 1 (RXFP1), transcript variant 12, non-coding RNA"	Chr4	159442866	159445865	+	59350	NR_045583.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0003366	0.9767867	A	0.9066057	A	1.04984838896164	0	lncRNA	ENST00000509711	NA	NA	NA	NA	XLOC_003542	NA	ENST00000509711	NA	NA	"BROAD Institute lincRNA (XLOC_003542), lincRNA [TCONS_00007533]"	chr4:55822896-55822955	hs|4q12	Agilent_HUMAN_G3V2	ENST00000509711	ENST00000509711	chr4	 55822896	 55822955	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00806080	0.9090647	A	0.9052005	A	1.00268204961208	0	lncRNA	XR_108925	XR_108925	XR_108925	NA	NA	LOC100506189	NA	ENST00000437881	THC2652445	NA	"PREDICTED: Homo sapiens hypothetical LOC100506189 (LOC100506189), miscRNA [XR_108925]"	chr9:6066466-6066525	hs|9p24.1	Agilent_HUMAN_G3V2	XR_108925	XR_108925	chr9	  6066466	  6066525	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006858	0.90857685	A	0.90261644	A	1.00413998755573	0	lncRNA	TCONS_00018163	NA	NA	NA	NA	XLOC_008455	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008455), lincRNA [TCONS_00018163]"	chr10:37719463-37719522	hs|10p11.21	Agilent_HUMAN_G3V2	TCONS_00018163	TCONS_00018163	chr10	 37719463	 37719522	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3372600	2.7602773	A	1.8667005	A	1.85777630867266	0	lncRNA	XR_109159	XR_109159	XR_109159	100129119	NA	LOC100129119	uncharacterized LOC100129119	NA	THC2562852	NA	"PREDICTED: Homo sapiens hypothetical LOC100129119, transcript variant 1 (LOC100129119), miscRNA [XR_109159]"	chr15:72929187-72929128	hs|15q24.1	Agilent_HUMAN_G3V2	XR_109159	XR_109159	chr15	 72929128	 72929187	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011240	0.9104518	A	0.89481735	A	1.01089590764169	0	lncRNA	TCONS_l2_00007710	NA	NA	NA	NA	XLOC_l2_004180	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004180), lincRNA [TCONS_l2_00007710]"	chr14:48682794-48682853	hs|14q21.3	Agilent_HUMAN_G3V2	TCONS_l2_00007710	TCONS_l2_00007710	chr14	 48682794	 48682853	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006428	0.9220196	A	0.9043346	A	1.01233374888886	0	lncRNA	ENST00000443247	NA	NA	NA	NA	XLOC_008021	NA	ENST00000443247	NA	NA	"BROAD Institute lincRNA (XLOC_008021), lincRNA [TCONS_00017205]"	chrX:84474479-84474538	hs|Xq21.1	Agilent_HUMAN_G3V2	ENST00000443247	ENST00000443247	chrX	 84474479	 84474538	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013488	1.0125207	A	1.7515962	A	0.599123156169534	0	lncRNA	TCONS_l2_00027783	NA	NA	NA	NA	XLOC_l2_014217	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014217), lincRNA [TCONS_l2_00027783]"	chr8:58142383-58142442	hs|8q12.1	Agilent_HUMAN_G3V2	TCONS_l2_00027783	TCONS_l2_00027783	chr8	 58142383	 58142442	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008158	4.254911	P	3.53939	P	1.64207611298147	0	lncRNA	TCONS_00021993	NA	NA	NA	NA	XLOC_010596	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010596), lincRNA [TCONS_00021993]"	chr13:46850645-46850586	hs|13q14.13	Agilent_HUMAN_G3V2	TCONS_00021993	TCONS_00021993	chr13	 46850586	 46850645	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007514	0.9870587	A	1.0288153	A	0.971471380619191	0	lncRNA	TCONS_00020280	NA	NA	NA	NA	XLOC_009626	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009626), lincRNA [TCONS_00020280]"	chr12:5090338-5090397	hs|12p13.32	Agilent_HUMAN_G3V2	TCONS_00020280	TCONS_00020280	chr12	  5090338	  5090397	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005477	9.110779	P	9.048638	P	1.04401395783745	0	lncRNA	TCONS_00013731	NA	NA	NA	NA	XLOC_006381	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006381), lincRNA [TCONS_00013731]"	chr7:25594509-25594450	hs|7p15.2	Agilent_HUMAN_G3V2	TCONS_00013731	TCONS_00013731	chr7	 25594450	 25594509	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37530_PI429285431	0.9226079	A	0.94665873	A	0.983467423231485	0	lncRNA	38634-1_{1..1631}	n346004|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1553|NULL|-1.4660100|-0.3214234	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346004|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1553|NULL|-1.4660100|-0.3214234	chr3	191632976	191634606	-	NA	NA	NA	NA	NA	"hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.80;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0,hg19_refFlat_DYX1C1:range=chr15:55710233-557905275'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-69.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0,hg19_refFlat_HHLA3:range=chr1:70820635-708334115'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80"	NA	inter
LNCA_21_P0001670	3.020006	P	3.179486	P	0.895347728807634	0	lncRNA	TCONS_00001972	NA	NA	NA	NA	XLOC_000122	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000122), lincRNA [TCONS_00001972]"	chr1:31333737-31333898	hs|1p35.2	Agilent_HUMAN_G3V2	TCONS_00001972	TCONS_00001972	chr1	 31333737	 31333898	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005140	0.91377234	A	0.91732824	A	0.997538272972596	0	lncRNA	TCONS_00012617	NA	NA	NA	NA	XLOC_005501	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005501), lincRNA [TCONS_00012617]"	chr6:150262166-150262225	hs|6q25.1	Agilent_HUMAN_G3V2	TCONS_00012617	TCONS_00012617	chr6	150262166	150262225	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007079	0.9087669	A	0.9030836	A	1.00394713286209	0	lncRNA	ENST00000436430	NA	NA	NA	NA	XLOC_008636	NA	ENST00000436430	NA	NA	"BROAD Institute lincRNA (XLOC_008636), lincRNA [TCONS_00018827]"	chr10:120001184-120004908	hs|10q26.11	Agilent_HUMAN_G3V2	ENST00000436430	ENST00000436430	chr10	120001184	120004908	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32108_PI429285431	0.9245536	A	1.3456069	A	0.746879134787478	0	lncRNA	33811-1_{1..401}	n338673|AF073328|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1087|NULL|-1.2237100|-0.3003274	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338673|AF073328|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1087|NULL|-1.2237100|-0.3003274	chr13	 44350357	 44350757	+	NA	NA	NA	NA	ENOX1	NA	chr13:44340357-44360758	inner
CUST_319_PI429285431	4.1329293	P	3.9851508	P	1.1078622423898	0	lncRNA	310-1_{1..646}	"transcript_id ""ENST00000432162.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,UCSC,"	">transcript_id ""ENST00000432162.1"" | genecode_v17"	chr1	 95138453	 95139098	-	ENSG00000224081.3	ENST00000432162.1	RP11-86H7.1	RP11-86H7.1-007	NA	NA	NA	inter
LNCA_21_P0003756	6.11522	P	5.9810977	P	1.0974249644357	0	lncRNA	TCONS_00008550	NA	NA	NA	NA	XLOC_004049	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004049), lincRNA [TCONS_00008550]"	chr4:115256319-115233135	hs|4q26	Agilent_HUMAN_G3V2	TCONS_00008550	TCONS_00008550	chr4	115233135	115256319	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010593	1.9512818	A	2.0767708	A	0.916693278297253	0	lncRNA	TCONS_l2_00000968	NA	NA	NA	NA	XLOC_l2_000727	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000727), lincRNA [TCONS_l2_00000968]"	chr1:727105-727046	hs|1p36.33	Agilent_HUMAN_G3V2	TCONS_l2_00000968	TCONS_l2_00000968	chr1	   727046	   727105	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22376_PI429285431	0.99892205	A	1.036154	A	0.974522938894185	0	lncRNA	23969-1_{1..587}	lnc-CD302-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CD302-1:1	chr2	160407867	160408453	-	lnc-CD302-1	lnc-CD302-1:1	ENSG00000257970.1	RP11-542H1.1	BAZ2B	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60chr2:160397867-160417977"	NA	inner
LNCA_21_P0009199	1.0098345	A	1.0360456	A	0.981995895801734	0	lncRNA	ENST00000514726	NA	BC039326	NA	Hs.591168	XLOC_012522	NA	ENST00000514726	NA	NA	"BROAD Institute lincRNA (XLOC_012522), lincRNA [TCONS_00025243]"	chr17:49411108-49410466	hs|17q21.33	Agilent_HUMAN_G3V2	ENST00000514726	ENST00000514726	chr17	 49410466	 49411108	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30122_PI429285431	0.9927256	A	0.94960856	A	1.03033753733705	0	lncRNA	31895-1_{1..276}	n334749|AJ008198|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244279|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244279|0.1745930|-0.0982660	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334749|AJ008198|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000244279|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000244279|0.1745930|-0.0982660	chr14	106405611	106405886	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014472	1.0015634	A	1.0352037	A	0.976952077216184	0	lncRNA	XR_109972	XR_109972	XR_109972	NA	NA	SOS1-IT1	SOS1 intronic transcript 1 (non-protein coding)	NA	THC2757892	NA	"PREDICTED: Homo sapiens SOS1 intronic transcript 1 (non-protein coding) (SOS1-IT1), miscRNA [XR_109972]"	chr2:39219578-39219519	hs|2p22.1	Agilent_HUMAN_G3V2	XR_109972	XR_109972	chr2	 39219519	 39219578	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16650_PI429285431	4.187485	P	4.2539787	P	0.954956088029036	0	lncRNA	18352-1_{1..302}	lnc-RALA-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RALA-1:4	chr7	 39821343	 39821644	+	lnc-RALA-1	lnc-RALA-1:4	XLOC_006058	linc-CDK13-1	NA	NA	NA	inter
LNCA_21_P0007337	0.9724212	A	1.5458673	A	0.672009670849065	0	lncRNA	TCONS_00019611	NA	NA	NA	NA	XLOC_009412	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009412), lincRNA [TCONS_00019611]"	chr11:33958314-33958255	hs|11p13	Agilent_HUMAN_G3V2	TCONS_00019611	TCONS_00019611	chr11	 33958255	 33958314	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2826_PI429285431	1.2662982	A	1.2661947	A	1.00007174330662	0	lncRNA	2810-1_{1..373}	"transcript_id ""ENST00000456513.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000456513.1"" | genecode_v17"	chr7	 48700171	 48700543	-	ENSG00000228173.1	ENST00000456513.1	AC091770.3	AC091770.3-001	NA	NA	NA	inter
LNCA_21_P0013074	0.92696047	A	0.97931427	A	0.964361659895894	0	lncRNA	TCONS_l2_00024682	NA	NA	NA	NA	XLOC_l2_012931	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012931), lincRNA [TCONS_l2_00024682]"	chr6:28283407-28281282	hs|6p22.1	Agilent_HUMAN_G3V2	TCONS_l2_00024682	TCONS_l2_00024682	chr6	 28281282	 28283407	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005213	3.6695027	P	3.5888116	P	1.05752450945708	0	lncRNA	ENST00000411542	NA	NA	NA	NA	XLOC_005988	NA	ENST00000411542	NA	NA	"BROAD Institute lincRNA (XLOC_005988), lincRNA [TCONS_00012955]"	chr7:13141148-13141207	hs|7p21.3	Agilent_HUMAN_G3V2	ENST00000411542	ENST00000411542	chr7	 13141148	 13141207	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006287	5.6106796	P	5.732792	P	0.918841294001167	0	lncRNA	TCONS_00016392	NA	NA	NA	NA	XLOC_007761	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007761), lincRNA [TCONS_00016392]"	chr9:90475330-90475271	hs|9q22.1	Agilent_HUMAN_G3V2	TCONS_00016392	TCONS_00016392	chr9	 90475271	 90475330	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009351	1.8773339	A	2.8660486	A	0.503926524287063	0	lncRNA	TCONS_00025742	NA	NA	NA	NA	XLOC_012559	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012559), lincRNA [TCONS_00025742]"	chr17:66805332-66805273	hs|17q24.2	Agilent_HUMAN_G3V2	TCONS_00025742	TCONS_00025742	chr17	 66805273	 66805332	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26842_PI429285431	0.92357326	A	0.90671647	A	1.01175276378906	0	lncRNA	28356-1_{1..466}	n323913|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055698|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055698|-1.2748500|-0.5411226	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323913|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000055698|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000055698|-1.2748500|-0.5411226	chrX	  8791901	  8792366	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013575	1.4301434	A	0.9017227	A	1.44234940935276	0	lncRNA	TCONS_l2_00028768	NA	NA	NA	NA	XLOC_l2_014821	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014821), lincRNA [TCONS_l2_00028768]"	chr9:67333490-67333549	hs|9q13	Agilent_HUMAN_G3V2	TCONS_l2_00028768	TCONS_l2_00028768	chr9	 67333490	 67333549	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003371	0.90896857	A	0.8985371	A	1.00725674752012	0	lncRNA	ENST00000512546	NA	NA	NA	NA	XLOC_003552	NA	ENST00000512546	NA	NA	"BROAD Institute lincRNA (XLOC_003552), lincRNA [TCONS_00007541]"	chr4:60041757-60041816	hs|4q13.1	Agilent_HUMAN_G3V2	ENST00000512546	ENST00000512546	chr4	 60041757	 60041816	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012706	0.90989804	A	0.8961911	A	1.00954620389809	0	lncRNA	THC2679516	NA	NA	NA	NA	XLOC_l2_011424	NA	NA	THC2679516	NA	"BROAD Institute lincRNA (XLOC_l2_011424), lincRNA [TCONS_l2_00021493]"	chr4:190742289-190742230	hs|4q35.2	Agilent_HUMAN_G3V2	THC2679516	THC2679516	chr4	190742230	190742289	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003009	0.925219	A	0.901557	A	1.01653648741424	0	lncRNA	TCONS_00006158	NA	NA	NA	NA	XLOC_002766	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002766), lincRNA [TCONS_00006158]"	chr3:115157024-115157083	hs|3q13.31	Agilent_HUMAN_G3V2	TCONS_00006158	TCONS_00006158	chr3	115157024	115157083	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006109	6.1514134	P	6.1289406	P	1.01569891116609	0	lncRNA	ENST00000425370	NA	NA	NA	NA	XLOC_007855	NA	ENST00000425370	NA	NA	"BROAD Institute lincRNA (XLOC_007855), lincRNA [TCONS_00015884]"	chr9:129370617-129370558	hs|9q33.3	Agilent_HUMAN_G3V2	ENST00000425370	ENST00000425370	chr9	129370558	129370617	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008268	1.9740402	A	3.5361433	P	0.33865704189774	0	lncRNA	TCONS_00022320	NA	NA	NA	NA	XLOC_010739	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010739), lincRNA [TCONS_00022320]"	chr13:114447788-114446357	hs|13q34	Agilent_HUMAN_G3V2	TCONS_00022320	TCONS_00022320	chr13	114446357	114447788	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_27054_PI429285431	10.876689	P	11.622835	P	0.596194098574561	0	lncRNA	28588-1_{1..206}	n324165|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051518|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051518|-1.2305000|-0.3977509	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n324165|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000051518|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000051518|-1.2305000|-0.3977509	chr9	  2531096	  2531301	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_20960_PI429285431	1.5741681	A	2.555532	A	0.506500676129878	0	lncRNA	22591-1_{1..534}	lnc-SGK1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,UCSC,"	>lnc-SGK1-2:1	chr6	134980887	134981420	-	lnc-SGK1-2	lnc-SGK1-2:1	ENSG00000232310.1	RP11-557H15.4	NA	NA	NA	inter
CUST_1165_PI429285431	1.6639593	A	2.5365696	A	0.546157780792332	0	lncRNA	1154-1_{1..768}	"transcript_id ""ENST00000438963.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000438963.1"" | genecode_v17"	chr2	176122070	176122837	+	ENSG00000229066.1	ENST00000438963.1	AC096649.3	AC096649.3-002	NA	NA	NA	inter
LNCA_19_P00317163	3.1943524	P	2.8304906	A	1.28686596872177	0	lncRNA	XR_132653	XR_132653	XR_132653	NA	NA	LOC100506694	NA	NA	THC2587031	NA	"PREDICTED: Homo sapiens hypothetical LOC100506694, transcript variant 6 (LOC100506694), miscRNA [XR_132653]"	chr19:28284453-28284512	hs|19q11	Agilent_HUMAN_G3V2	XR_132653	XR_132653	chr19	 28284453	 28284512	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006348	0.9211181	A	0.9328369	A	0.991910048048127	0	lncRNA	TCONS_00016578	NA	NA	NA	NA	XLOC_007352	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007352), lincRNA [TCONS_00016578]"	chr9:38662531-38662590	hs|9p13.1	Agilent_HUMAN_G3V2	TCONS_00016578	TCONS_00016578	chr9	 38662531	 38662590	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00321147	5.0253606	P	5.6670675	P	0.640954166023899	0	lncRNA	TCONS_l2_00020135	NA	NA	NA	NA	XLOC_l2_010239	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010239), lincRNA [TCONS_l2_00020135]"	chr3:72291709-72291650	hs|3p13	Agilent_HUMAN_G3V2	TCONS_l2_00020135	TCONS_l2_00020135	chr3	 72291650	 72291709	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011789	0.91199195	A	1.9305508	A	0.49360918661284	0	lncRNA	TCONS_l2_00013434	NA	NA	NA	NA	XLOC_l2_007176	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007176), lincRNA [TCONS_l2_00013434]"	chr2:3527110-3527169	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_l2_00013434	TCONS_l2_00013434	chr2	  3527110	  3527169	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12616_PI429285431	0.919544	A	0.9054206	A	1.00983766972363	0	lncRNA	14231-1_{1..1793}	lnc-FAM154A-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM154A-1:1	chr9	 18437239	 18439031	-	lnc-FAM154A-1	lnc-FAM154A-1:1	XLOC_007654	linc-BNC2-2	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-61.70;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.50;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.60;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.80;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.70;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-21.50;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-85.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70"	NA	inter
LNCA_21_P0014535	6.3403935	P	6.585826	P	0.843562869750276	0	lncRNA	XR_110230	XR_110230	XR_110230	NA	Hs.729224	LOC100506718	uncharacterized LOC100506718	ENST00000555398	THC2639388	NA	"PREDICTED: Homo sapiens hypothetical LOC100506718 (LOC100506718), miscRNA [XR_110230]"	chr14:86029317-86029376	hs|14q31.3	Agilent_HUMAN_G3V2	XR_110230	XR_110230	chr14	 86029317	 86029376	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008777	3.6379976	P	2.818849	A	1.76436445352232	0	lncRNA	TCONS_00023778	NA	NA	NA	NA	XLOC_011572	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011572), lincRNA [TCONS_00023778]"	chr15:89897467-89897408	hs|15q26.1	Agilent_HUMAN_G3V2	TCONS_00023778	TCONS_00023778	chr15	 89897408	 89897467	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42501_PI429285431	1.501324	A	1.4316648	A	1.04946874404812	0	lncRNA	45275-1_{1..80}	ENST00000364632 ncrna:snoRNA chromosome:GRCh37:12:93659793:93659872:1 gene:ENSG00000201502 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364632 ncrna:snoRNA chromosome:GRCh37:12:93659793:93659872:1 gene:ENSG00000201502 gene_biotype:snoRNA transcript_biotype:snoRNA	chr12	 93659793	 93659872	+	ENSG00000201502	ENST00000364632	NA	NA	NA	NA	NA	inter
LNCA_21_P0002846	2.7267208	A	3.0385876	P	0.805598666288036	0	lncRNA	ENST00000456335	NA	NA	NA	NA	XLOC_003093	NA	ENST00000456335	NA	NA	"BROAD Institute lincRNA (XLOC_003093), lincRNA [TCONS_00005764]"	chr3:40646305-40644660	hs|3p22.1	Agilent_HUMAN_G3V2	ENST00000456335	ENST00000456335	chr3	 40644660	 40646305	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001652	0.99508655	A	0.895619	A	1.07137798014384	0	lncRNA	TCONS_00001898	NA	NA	NA	NA	XLOC_001286	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001286), lincRNA [TCONS_00001898]"	chr1:244210793-244210583	hs|1q44	Agilent_HUMAN_G3V2	TCONS_00001898	TCONS_00001898	chr1	244210583	244210793	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00319072	0.9108874	A	0.8953828	A	1.01080492588684	0	lncRNA	TCONS_00012548	NA	NA	NA	NA	XLOC_005397	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005397), lincRNA [TCONS_00012548]"	chr6:98275947-98276006	hs|6q16.1	Agilent_HUMAN_G3V2	TCONS_00012548	TCONS_00012548	chr6	 98275947	 98276006	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43421_PI429285431	2.3743975	A	3.844047	A	0.361070009493632	0	lncRNA	48233-1_{1..1443}	"gi|336391163|ref|NR_038842.1| Homo sapiens uncharacterized LOC728431 (LOC728431), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|336391163|ref|NR_038842.1| Homo sapiens uncharacterized LOC728431 (LOC728431), non-coding RNA"	Chr1	 37920480	 37921922	-	728431	NR_038842.1	NA	NA	NA	"hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80"	NA	inter
CUST_11725_PI429285431	5.001071	P	5.1711655	P	0.888784461736897	0	lncRNA	13303-1_{1..1945}	lnc-POLN-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-POLN-1:2	chr4	  2043443	  2045387	-	lnc-POLN-1	lnc-POLN-1:2	XLOC_003854	linc-WHSC2-1	C4orf48	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.50;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.70;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.21;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chr4:2043720-2045697"	NA	inter
CUST_11805_PI429285431	5.0585575	P	4.893154	P	1.12147969509168	0	lncRNA	13386-1_{1..346}	lnc-ARID2-3:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ARID2-3:8	chr12	 46965039	 46965384	+	lnc-ARID2-3	lnc-ARID2-3:8	XLOC_009723	linc-FAM113B-3	NA	NA	NA	inter
CUST_37242_PI429285431	6.3289804	P	6.692337	P	0.777353868692877	0	lncRNA	38349-1_{1..1527}	n345673|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1222|NULL|-1.3430500|-0.1466343	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n345673|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1222|NULL|-1.3430500|-0.1466343	chr1	  6297050	  6298576	+	NA	NA	NA	NA	ICMT	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.70;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-74.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.50;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-91.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.10chr1:6287050-6296044"	NA	inter
CUST_42044_PI429285431	6.384036	P	6.5034947	P	0.920532970332851	0	lncRNA	43934-1_{1..65}	ENST00000581408 ncrna:miRNA chromosome:GRCh37:7:62528465:62528529:-1 gene:ENSG00000265865 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581408 ncrna:miRNA chromosome:GRCh37:7:62528465:62528529:-1 gene:ENSG00000265865 gene_biotype:miRNA transcript_biotype:miRNA	chr7	 62528465	 62528529	-	ENSG00000265865	ENST00000581408	NA	NA	NA	NA	NA	inter
LNCA_21_P0006846	0.92441547	A	0.90466785	A	1.01378211679635	0	lncRNA	TCONS_00018145	NA	NA	NA	NA	XLOC_008424	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008424), lincRNA [TCONS_00018145]"	chr10:29046301-29046360	hs|10p12.1	Agilent_HUMAN_G3V2	TCONS_00018145	TCONS_00018145	chr10	 29046301	 29046360	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002530	0.9236705	A	0.98093367	A	0.961085595446269	0	lncRNA	TCONS_00004541	NA	NA	NA	NA	XLOC_002446	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002446), lincRNA [TCONS_00004541]"	chr2:197502915-197502856	hs|2q33.1	Agilent_HUMAN_G3V2	TCONS_00004541	TCONS_00004541	chr2	197502856	197502915	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004587	1.0145504	A	1.0201378	A	0.996134599411576	0	lncRNA	TCONS_00011099	NA	NA	NA	NA	XLOC_005102	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005102), lincRNA [TCONS_00011099]"	chr5:178122435-178122376	hs|5q35.3	Agilent_HUMAN_G3V2	TCONS_00011099	TCONS_00011099	chr5	178122376	178122435	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21393_PI429285431	0.9706228	A	1.0234601	A	0.964038521099281	0	lncRNA	23015-1_{1..321}	lnc-TMEM55A-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TMEM55A-1:2	chr8	 92056849	 92057169	-	lnc-TMEM55A-1	lnc-TMEM55A-1:2	ENSG00000254219.1	GS1-251I9.2	TMEM55A	NA	chr8:92046849-92053203	inter
CUST_41749_PI429285431	1.2577255	A	0.9822288	A	1.21041074521218	0	lncRNA	43294-1_{1..84}	ENST00000385021 ncrna:miRNA chromosome:GRCh37:14:101512792:101512875:1 gene:ENSG00000207754 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000385021 ncrna:miRNA chromosome:GRCh37:14:101512792:101512875:1 gene:ENSG00000207754 gene_biotype:miRNA transcript_biotype:miRNA	chr14	101512792	101512875	+	ENSG00000207754	ENST00000385021	NA	NA	NA	NA	NA	inter
LNCA_21_P0002555	5.818291	P	5.8288817	P	0.992685964851271	0	lncRNA	TCONS_00004627	NA	NA	NA	NA	XLOC_002541	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002541), lincRNA [TCONS_00004627]"	chr2:240834868-240834809	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_00004627	TCONS_00004627	chr2	240834809	240834868	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002849	0.9300851	A	0.99430823	A	0.956460218668102	0	lncRNA	ENST00000432423	NA	NA	NA	NA	XLOC_003103	NA	ENST00000432423	NA	NA	"BROAD Institute lincRNA (XLOC_003103), lincRNA [TCONS_00005768]"	chr3:43821424-43821365	hs|3p21.33	Agilent_HUMAN_G3V2	ENST00000432423	ENST00000432423	chr3	 43821365	 43821424	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46644_PI429285431	0.93331575	A	0.99053186	A	0.96111694609524	0	lncRNA	50817-1_{1..739}	"gi|397139896|ref|XR_158898.1| PREDICTED: Homo sapiens uncharacterized LOC100996338 (LOC100996338), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|397139896|ref|XR_158898.1| PREDICTED: Homo sapiens uncharacterized LOC100996338 (LOC100996338), misc_RNA"	Chr16	 54279460	 54280198	-	100996338	XR_158898.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0001459	1.318924	A	0.9079027	A	1.32962673869244	0	lncRNA	TCONS_00001379	NA	NA	NA	NA	XLOC_000682	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000682), lincRNA [TCONS_00001379]"	chr1:2976154-2976095	hs|1p36.32	Agilent_HUMAN_G3V2	TCONS_00001379	TCONS_00001379	chr1	  2976095	  2976154	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002331	5.518865	P	5.91056	P	0.762233541846688	0	lncRNA	TCONS_00003970	NA	NA	NA	NA	XLOC_001784	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001784), lincRNA [TCONS_00003970]"	chr2:190406669-190406728	hs|2q32.2	Agilent_HUMAN_G3V2	TCONS_00003970	TCONS_00003970	chr2	190406669	190406728	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43060_PI429285431	2.738663	A	2.8089864	A	0.952424475024952	0	lncRNA	46854-1_{1..143}	ENST00000410245 ncrna:snRNA chromosome:GRCh37:16:68363290:68363432:-1 gene:ENSG00000222177 gene_biotype:snRNA transcript_biotype:snRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000410245 ncrna:snRNA chromosome:GRCh37:16:68363290:68363432:-1 gene:ENSG00000222177 gene_biotype:snRNA transcript_biotype:snRNA	chr16	 68363290	 68363432	-	ENSG00000222177	ENST00000410245	NA	NA	PRMT7	NA	chr16:68353290-68373432	inner
LNCA_21_P0002468	2.2963502	A	0.8984128	A	2.63524555501199	0	lncRNA	TCONS_00004321	NA	NA	NA	NA	XLOC_002186	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002186), lincRNA [TCONS_00004321]"	chr2:84697343-84697284	hs|2p11.2	Agilent_HUMAN_G3V2	TCONS_00004321	TCONS_00004321	chr2	 84697284	 84697343	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004602	0.90975213	A	2.2474897	A	0.395640612109315	0	lncRNA	XR_110208	XR_110208	XR_110208	NA	Hs.221513	LOC100287366	uncharacterized LOC100287366	NA	THC2606183	NA	"PREDICTED: Homo sapiens hypothetical LOC100287366 (LOC100287366), miscRNA [XR_110208]"	chr6:108479110-108479169	hs|6q21	Agilent_HUMAN_G3V2	XR_110208	XR_110208	chr6	108479110	108479169	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15542_PI429285431	1.0904722	A	0.9040129	A	1.13796745637382	0	lncRNA	17228-1_{1..909}	lnc-NUDCD2-5:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NUDCD2-5:1	chr5	163896709	163897617	-	lnc-NUDCD2-5	lnc-NUDCD2-5:1	XLOC_005070	linc-NUDCD2-1	NA	NA	NA	inter
LNCA_21_P0003204	5.0499153	P	5.6900134	P	0.641669315235733	0	lncRNA	TCONS_00006739	NA	NA	NA	NA	XLOC_003378	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003378), lincRNA [TCONS_00006739]"	chr3:193551497-193551438	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00006739	TCONS_00006739	chr3	193551438	193551497	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11868_PI429285431	1.9933254	A	3.0215566	A	0.49031092061332	0	lncRNA	13447-1_{1..229}	lnc-SLC1A2-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SLC1A2-2:3	chr11	 35157893	 35158121	-	lnc-SLC1A2-2	lnc-SLC1A2-2:3	XLOC_009416	linc-APIP-2	CD44	NA	chr11:35160417-35168084	inter
CUST_30526_PI429285431	14.133254	P	13.623975	P	1.42333869133368	0	lncRNA	32306-1_{1..317}	n335684|CR616839|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000296034|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000296034|-0.1603250|-0.3679045	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335684|CR616839|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000296034|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000296034|-0.1603250|-0.3679045	chr15	 66791653	 66791969	-	NA	NA	NA	NA	MAP2K1	NA	chr15:66781653-66783882	inner
LNCA_21_P0006620	3.6729887	P	4.1784897	P	0.704415714944728	0	lncRNA	BC036396	NA	BC036396	NA	Hs.468865	XLOC_008667	NA	NA	THC2515655	NA	"BROAD Institute lincRNA (XLOC_008667), lincRNA [TCONS_00017723]"	chr10:131918774-131918833	hs|10q26.3	Agilent_HUMAN_G3V2	BC036396	BC036396	chr10	131918774	131918833	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21008_PI429285431	6.796207	P	7.0424933	P	0.843063789293683	0	lncRNA	22637-1_{1..440}	lnc-TARDBP-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TARDBP-2:2	chr1	 11161858	 11162297	+	lnc-TARDBP-2	lnc-TARDBP-2:2	ENSG00000230337.1	RP4-635E18.6	MTOR	"hg19_refFlat_EXOSC10:range=chr1:11126775-111598885'pad=0,hg19_refFlat_EXOSC10:range=chr1:11126775-111598885'pad=0 3'pad=0 strand=- repeatMasking=none,-98.80chr1:11166588-11172157"	NA	inter
CUST_20331_PI429285431	1.4181393	A	1.6054012	A	0.878271016620181	0	lncRNA	21974-1_{1..517}	lnc-AL020996.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AL020996.1-1:2	chr1	 26146203	 26146719	-	lnc-AL020996.1-1	lnc-AL020996.1-1:2	ENSG00000228172.1	RP1-317E23.3	FAM54B	NA	chr1:26146397-26156234	inter
CUST_39056_PI429285431	0.93032914	A	0.92973924	A	1.00040897112771	0	lncRNA	40033-1_{1..1318}	n385504|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zur.2||-1.0339500|-0.2459617	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n385504|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc003zur.2||-1.0339500|-0.2459617	chr9	 34568009	 34569326	+	NA	NA	NA	NA	CNTFR	NA	chr9:34558009-34590138	inter
LNCA_21_P0006157	1.915626	A	1.7052073	A	1.15702392750556	0	lncRNA	TCONS_00016018	NA	NA	NA	NA	XLOC_007412	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007412), lincRNA [TCONS_00016018]"	chr9:77791126-77791185	hs|9q21.13	Agilent_HUMAN_G3V2	TCONS_00016018	TCONS_00016018	chr9	 77791126	 77791185	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014918	4.036403	P	5.43865	P	0.378339418206591	0	lncRNA	ENST00000433784	XR_133098	XR_133098	NA	Hs.567926	LOC100653257	NA	ENST00000433784	THC2521734	NA	"PREDICTED: Homo sapiens hypothetical LOC100653257 (LOC100653257), miscRNA [XR_133098]"	chr16:32193209-32193150	hs|16p11.2	Agilent_HUMAN_G3V2	ENST00000433784	ENST00000433784	chr16	 32193150	 32193209	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40935_PI429285431	2.617405	A	1.7927978	A	1.77105277118242	0	lncRNA	41618-2_{3001..6000}	n410890|NR_038352|lncRNA|Homosapiens||RefGeneNoncode|NR_038352||2.1744600|-0.3788877	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410890|NR_038352|lncRNA|Homosapiens||RefGeneNoncode|NR_038352||2.1744600|-0.3788877	chr5	112315406	112318405	+	NA	NA	NA	NA	MCC	"hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.90;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.60;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.70;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.40;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-10.40;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-47.80;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0,hg19_refFlat_PPP1R14D:range=chr15:41107845-411208395'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-30.61;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-74.50;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0,hg19_refFlat_GYG2:range=chrX:2748230-27992545'pad=0 3'pad=0 strand=+ repeatMasking=none,-33.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40chr5:112357796-112367892"	NA	inner
LNCA_21_P0010159	0.97938836	A	1.025767	A	0.968364005593479	0	lncRNA	ENST00000453716	NA	NA	NA	NA	XLOC_013919	NA	ENST00000453716	NA	NA	"BROAD Institute lincRNA (XLOC_013919), lincRNA [TCONS_00028834]"	chr21:34437230-34437289	hs|21q22.11	Agilent_HUMAN_G3V2	ENST00000453716	ENST00000453716	chr21	 34437230	 34437289	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007394	2.550664	A	2.1553252	A	1.31525159534289	0	lncRNA	TCONS_00019749	NA	NA	NA	NA	XLOC_009543	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009543), lincRNA [TCONS_00019749]"	chr11:106474974-106474915	hs|11q22.3	Agilent_HUMAN_G3V2	TCONS_00019749	TCONS_00019749	chr11	106474915	106474974	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004915	2.3027673	A	0.9055966	A	2.63384546286714	0	lncRNA	TCONS_00011909	NA	NA	NA	NA	XLOC_005410	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005410), lincRNA [TCONS_00011909]"	chr6:106525942-106526001	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00011909	TCONS_00011909	chr6	106525942	106526001	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010842	1.9778078	A	1.5947719	A	1.30408318563965	0	lncRNA	ENST00000445161	XR_110461	XR_110461	NA	NA	XLOC_l2_001760	NA	ENST00000445161	THC2686874	NA	"PREDICTED: Homo sapiens hypothetical LOC100506126 (LOC100506126), miscRNA [XR_110461]"	chr10:120118617-120118676	hs|10q26.11	Agilent_HUMAN_G3V2	ENST00000445161	ENST00000445161	chr10	120118617	120118676	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012315	0.9093311	A	1.6891992	A	0.58242003920054	0	lncRNA	TCONS_l2_00018166	NA	NA	NA	NA	XLOC_l2_009302	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009302), lincRNA [TCONS_l2_00018166]"	chr22:20345678-20345737	hs|22q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00018166	TCONS_l2_00018166	chr22	 20345678	 20345737	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005881	0.9115387	A	0.89548826	A	1.01118743371598	0	lncRNA	ENST00000517376	NA	NA	NA	NA	XLOC_007177	NA	ENST00000517376	NA	NA	"BROAD Institute lincRNA (XLOC_007177), lincRNA [TCONS_00015130]"	chr8:104510464-104510405	hs|8q22.3	Agilent_HUMAN_G3V2	ENST00000517376	ENST00000517376	chr8	104510405	104510464	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005666	0.91346306	A	1.4744127	A	0.677855824827102	0	lncRNA	TCONS_00014638	NA	NA	NA	NA	XLOC_006732	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006732), lincRNA [TCONS_00014638]"	chr8:19619938-19619997	hs|8p21.3	Agilent_HUMAN_G3V2	TCONS_00014638	TCONS_00014638	chr8	 19619938	 19619997	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001366	0.92120445	A	0.89665383	A	1.01716281028968	0	lncRNA	TCONS_00001113	NA	NA	NA	NA	XLOC_000358	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000358), lincRNA [TCONS_00001113]"	chr1:115765659-115765718	hs|1p13.2	Agilent_HUMAN_G3V2	TCONS_00001113	TCONS_00001113	chr1	115765659	115765718	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011665	0.9261457	A	0.9025962	A	1.01645722194728	0	lncRNA	TCONS_l2_00012221	NA	NA	NA	NA	XLOC_l2_006548	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006548), lincRNA [TCONS_l2_00012221]"	chr19:304083-304142	hs|19p13.3	Agilent_HUMAN_G3V2	TCONS_l2_00012221	TCONS_l2_00012221	chr19	   304083	   304142	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001575	0.92521554	A	1.4427309	A	0.698573896550452	0	lncRNA	TCONS_00001648	NA	NA	NA	NA	XLOC_000986	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000986), lincRNA [TCONS_00001648]"	chr1:120616037-120615978	hs|1p11.2	Agilent_HUMAN_G3V2	TCONS_00001648	TCONS_00001648	chr1	120615978	120616037	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013370	2.0644324	A	0.90519	A	2.23340114599355	0	lncRNA	ENST00000439058	XR_108746	XR_108746	NA	Hs.59203	XLOC_l2_013301	NA	ENST00000439058	THC2641473	NA	"PREDICTED: Homo sapiens hypothetical LOC100506098, transcript variant 3 (LOC100506098), miscRNA [XR_108746]"	chr7:20261229-20261288	hs|7p21.1	Agilent_HUMAN_G3V2	ENST00000439058	ENST00000439058	chr7	 20261229	 20261288	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013328	1.0151019	A	1.0314608	A	0.988724920168301	0	lncRNA	TCONS_l2_00026663	NA	NA	NA	NA	XLOC_l2_013873	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013873), lincRNA [TCONS_l2_00026663]"	chr7:66057419-66057360	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00026663	TCONS_l2_00026663	chr7	 66057360	 66057419	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010271	1.0118512	A	1.0372388	A	0.982556585649102	0	lncRNA	TCONS_00029084	NA	NA	NA	NA	XLOC_014010	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014010), lincRNA [TCONS_00029084]"	chr21:18382395-18382336	hs|21q21.1	Agilent_HUMAN_G3V2	TCONS_00029084	TCONS_00029084	chr21	 18382336	 18382395	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31476_PI429285431	7.3621707	P	7.5893636	P	0.854295507031401	0	lncRNA	33242-1_{1..355}	n337955|U84507|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|340|NULL|-0.6556990|-0.1179928	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337955|U84507|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|340|NULL|-0.6556990|-0.1179928	chr22	 19931345	 19931699	-	NA	NA	NA	NA	TXNRD2	NA	chr22:19921345-19929359	inner
CUST_14735_PI429285431	4.438989	P	4.4221864	P	1.01171476140392	0	lncRNA	16399-1_{1..1134}	lnc-GLIPR1L1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GLIPR1L1-1:2	chr12	 75644273	 75645406	+	lnc-GLIPR1L1-1	lnc-GLIPR1L1-1:2	XLOC_009807	linc-GLIPR1L1-1	CAPS2	NA	chr12:75651515-75654819	inter
LNCA_21_P0001075	0.91131806	A	0.91053903	A	1.00054012826484	0	lncRNA	ENST00000430921	NA	NA	NA	NA	XLOC_000617	NA	ENST00000430921	THC2690712	NA	"BROAD Institute lincRNA (XLOC_000617), lincRNA [TCONS_00000419]"	chr1:232857881-232857940	hs|1q42.2	Agilent_HUMAN_G3V2	ENST00000430921	ENST00000430921	chr1	232857881	232857940	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004631	2.150188	A	2.6235893	A	0.720264497805415	0	lncRNA	ENST00000449333	NA	NA	NA	NA	XLOC_005167	NA	ENST00000449333	NA	NA	"BROAD Institute lincRNA (XLOC_005167), lincRNA [TCONS_00011264]"	chr6:10452391-10452450	hs|6p24.3	Agilent_HUMAN_G3V2	ENST00000449333	ENST00000449333	chr6	 10452391	 10452450	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012086	4.951934	P	4.734085	P	1.16299830969851	0	lncRNA	ENST00000446401	XR_109879	XR_109879	NA	Hs.374251	XLOC_l2_008221	NA	ENST00000446401	THC2656892	NA	"PREDICTED: Homo sapiens hypothetical LOC100506762 (LOC100506762), miscRNA [XR_109879]"	chr2:114588831-114588772	hs|2q14.1	Agilent_HUMAN_G3V2	ENST00000446401	ENST00000446401	chr2	114588772	114588831	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005442	4.621429	P	5.9495883	P	0.398276068730063	0	lncRNA	THC2664093	NA	NA	NA	NA	XLOC_006291	NA	NA	THC2664093	NA	"BROAD Institute lincRNA (XLOC_006291), lincRNA [TCONS_00013627]"	chr7:150040405-150040464	hs|7q36.1	Agilent_HUMAN_G3V2	THC2664093	THC2664093	chr7	150040405	150040464	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004136	0.9175612	A	0.89502096	A	1.01574639198058	0	lncRNA	ENST00000515199	NA	NA	NA	NA	XLOC_004859	NA	ENST00000515199	THC2714490	NA	"BROAD Institute lincRNA (XLOC_004859), lincRNA [TCONS_00009686]"	chr5:67829313-67829254	hs|5q13.1	Agilent_HUMAN_G3V2	ENST00000515199	ENST00000515199	chr5	 67829254	 67829313	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3263851	11.496795	P	11.333801	P	1.11960823232482	0	lncRNA	XR_109667	XR_109667	XR_109667	   400863	Hs.729814	FLJ46020	FLJ46020 protein	NA	THC2485653	NA	"PREDICTED: Homo sapiens FLJ46020 protein (FLJ46020), miscRNA [XR_109667]"	chr21:35335427-35335486	hs|21q22.11	Agilent_HUMAN_G3V2	XR_109667	XR_109667	chr21	 35335427	 35335486	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26119_PI429285431	3.9475935	P	3.0898378	A	1.81221697723739	0	lncRNA	27630-1_{1..893}	lnc-CHAF1B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CHAF1B-3:1	chr21	 37852529	 37853421	+	lnc-CHAF1B-3	lnc-CHAF1B-3:1	ENSG00000230479.1	AP000695.6	CLDN14	NA	chr21:37842529-37863368	inner
LNCA_21_P0004040	0.92085046	A	0.89648527	A	1.01703208246857	0	lncRNA	ENST00000502494	NA	NA	NA	NA	XLOC_004492	NA	ENST00000502494	NA	NA	"BROAD Institute lincRNA (XLOC_004492), lincRNA [TCONS_00009473]"	chr5:101841229-101841288	hs|5q21.1	Agilent_HUMAN_G3V2	ENST00000502494	ENST00000502494	chr5	101841229	101841288	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002109	0.92493	A	0.9000465	A	1.01739753225955	0	lncRNA	ENST00000432431	NA	NA	NA	NA	XLOC_002345	NA	ENST00000432431	NA	NA	"BROAD Institute lincRNA (XLOC_002345), lincRNA [TCONS_00003413]"	chr2:145446039-145445980	hs|2q22.3	Agilent_HUMAN_G3V2	ENST00000432431	ENST00000432431	chr2	145445980	145446039	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008584	0.92475367	A	0.90555626	A	1.01339555782747	0	lncRNA	TCONS_00023300	NA	NA	NA	NA	XLOC_011169	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011169), lincRNA [TCONS_00023300]"	chr15:23874464-23874523	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023300	TCONS_00023300	chr15	 23874464	 23874523	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32652_PI429285431	3.4669976	P	3.1393938	P	1.25492730965257	0	lncRNA	34305-1_{1..1588}	n339277|BC038350|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1709|NULL|-1.1991200|-0.3598839	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339277|BC038350|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1709|NULL|-1.1991200|-0.3598839	chr16	 71962989	 71964576	+	NA	NA	NA	NA	KIAA0174	"hg19_refFlat_PKD1L3:range=chr16:71963441-720338775'pad=0,hg19_refFlat_PKD1L3:range=chr16:71963441-720338775'pad=0 3'pad=0 strand=- repeatMasking=none,-88.80chr16:71952989-71962906"	NA	inner
LNCA_19_P00315826	1.0116348	A	1.0380603	A	0.981849971492978	0	lncRNA	EF413001	NA	EF413001	NA	Hs.711077	XLOC_001148	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001148), lincRNA [TCONS_00000111]"	chr1:198867710-198867651	hs|1q32.1	Agilent_HUMAN_G3V2	EF413001	EF413001	chr1	198867651	198867710	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006473	1.010905	A	1.0384452	A	0.981091636973178	0	lncRNA	TCONS_00017110	NA	NA	NA	NA	XLOC_007908	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007908), lincRNA [TCONS_00017110]"	chrX:288138-288197	hs|Xp22.33	Agilent_HUMAN_G3V2	TCONS_00017110	TCONS_00017110	chrX	   288138	   288197	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7165_PI429285431	1.3132957	A	1.0520033	A	1.19855191471447	0	lncRNA	7271-1_{1..318}	"transcript_id ""ENST00000411213.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000411213.1"" | genecode_v17"	chr2	  7281358	  7281675	-	ENSG00000223145.1	ENST00000411213.1	RN7SKP112	RN7SKP112-201	NA	NA	NA	inter
LNCA_21_P0008322	0.9164887	A	0.922372	A	0.99593031091394	0	lncRNA	ENST00000554829	NA	NA	NA	NA	XLOC_010804	NA	ENST00000554829	THC2733439	NA	"BROAD Institute lincRNA (XLOC_010804), lincRNA [TCONS_00022476]"	chr14:38033505-38033564	hs|14q21.1	Agilent_HUMAN_G3V2	ENST00000554829	ENST00000554829	chr14	 38033505	 38033564	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26703_PI429285431	1.3144295	A	1.0099694	A	1.23495639270755	0	lncRNA	28203-8_{21001..24000}	n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n1174|AF252279|KLHL1antisenseRNA|Homosapiens|KLHL1antisenseRNA|NONCODEv2.0|n1174|NULL|-0.8884860|-0.3974911	chr13	 70702309	 70705308	+	NA	NA	NA	NA	KLHL1	"hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0,hg19_refFlat_KLHL1:range=chr13:70275834-706818315'pad=0 3'pad=0 strand=- repeatMasking=none,-105.40;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-77.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-87.10chr13:70671309-70682625"	NA	inner
LNCA_21_P0006587	5.0265694	P	5.2791405	P	0.839399145681546	0	lncRNA	ENST00000432272	NA	NA	NA	NA	XLOC_008272	NA	ENST00000432272	NA	NA	"BROAD Institute lincRNA (XLOC_008272), lincRNA [TCONS_00017602]"	chrY:1824818-1824877	hs|Yp11.32	Agilent_HUMAN_G3V2	ENST00000432272	ENST00000432272	chrY	  1824818	  1824877	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004982	4.3778706	P	4.448899	P	0.951959168635171	0	lncRNA	TCONS_00012035	NA	NA	NA	NA	XLOC_005569	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005569), lincRNA [TCONS_00012035]"	chr6:729150-729091	hs|6p25.3	Agilent_HUMAN_G3V2	TCONS_00012035	TCONS_00012035	chr6	   729091	   729150	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013151	1.1309503	A	1.2153481	A	0.943178148802481	0	lncRNA	ENST00000446525	NA	NA	NA	NA	XLOC_l2_013099	NA	ENST00000446525	THC2737654	NA	"BROAD Institute lincRNA (XLOC_l2_013099), lincRNA [TCONS_l2_00025460]"	chr6:115954786-115954727	hs|6q22.1	Agilent_HUMAN_G3V2	ENST00000446525	ENST00000446525	chr6	115954727	115954786	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005189	3.5002527	P	1.3904444	A	4.31633936864363	0	lncRNA	XR_108720	XR_108720	XR_108720	NA	Hs.557780	LOC100507642	uncharacterized LOC100507642	NA	THC2627690	NA	"PREDICTED: Homo sapiens hypothetical LOC100507642 (LOC100507642), miscRNA [XR_108720]"	chr7:154399-154458	hs|7p22.3	Agilent_HUMAN_G3V2	XR_108720	XR_108720	chr7	   154399	   154458	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_2575_PI429285431	0.9209895	A	1.4816632	A	0.677985488699338	0	lncRNA	2563-1_{1..542}	"transcript_id ""ENST00000448282.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000448282.1"" | genecode_v17"	chr6	 88081311	 88081852	+	ENSG00000226524.1	ENST00000448282.1	RP1-102H19.6	RP1-102H19.6-001	C6orf163	NA	chr6:88071311-88075181	inter
CUST_1306_PI429285431	2.9148912	A	3.5072262	P	0.663268538605503	0	lncRNA	1296-1_{1..429}	"transcript_id ""ENST00000436060.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000436060.1"" | genecode_v17"	chr3	 10803391	 10803819	-	ENSG00000226567.1	ENST00000436060.1	LINC00606	LINC00606-002	NA	NA	NA	inter
LNCA_21_P0011097	1.001803	A	1.036992	A	0.975903904288986	0	lncRNA	TCONS_l2_00006291	NA	NA	NA	NA	XLOC_l2_003400	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003400), lincRNA [TCONS_l2_00006291]"	chr12:58997130-58997071	hs|12q14.1	Agilent_HUMAN_G3V2	TCONS_l2_00006291	TCONS_l2_00006291	chr12	 58997071	 58997130	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26270_PI429285431	1.0086541	A	1.4271185	A	0.748220604247757	0	lncRNA	27776-1_{1..1824}	lnc-C1orf168-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-C1orf168-1:1	chr1	 57292238	 57294061	-	lnc-C1orf168-1	lnc-C1orf168-1:1	ENSG00000229913.1	RP11-378I13.1	C1orf168	NA	chr1:57282238-57285369	inter
CUST_33859_PI429285431	7.743178	P	7.8930745	P	0.901315121299107	0	lncRNA	35403-1_{1..346}	n340645|U92987|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3107|NULL|-0.1993000|-0.0558162	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340645|U92987|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3107|NULL|-0.1993000|-0.0558162	chr5	139422460	139422805	-	NA	NA	NA	NA	NRG2	NA	chr5:139412460-139422884	inner
CUST_4169_PI429285431	2.1796677	A	1.9096328	A	1.20583699754371	0	lncRNA	4127-1_{1..640}	"transcript_id ""ENST00000538329.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000538329.1"" | genecode_v17"	chr12	 14369524	 14370163	+	ENSG00000256084.1	ENST00000538329.1	RP11-134N1.2	RP11-134N1.2-001	NA	NA	NA	inter
LNCA_21_P0003110	5.21604	P	4.6429396	P	1.48771729201951	0	lncRNA	THC2659360	NA	NA	NA	NA	XLOC_003077	NA	NA	THC2659360	NA	"BROAD Institute lincRNA (XLOC_003077), lincRNA [TCONS_00006466]"	chr3:033002691-033002632	hs|3p22.3	Agilent_HUMAN_G3V2	THC2659360	THC2659360	chr3	 33002632	 33002691	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006558	2.5414484	A	2.105747	A	1.35256825595601	0	lncRNA	TCONS_00017413	NA	NA	NA	NA	XLOC_007949	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007949), lincRNA [TCONS_00017413]"	chrX:36019793-36032918	hs|Xp21.1	Agilent_HUMAN_G3V2	TCONS_00017413	TCONS_00017413	chrX	 36019793	 36032918	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003073	3.4115164	P	4.560812	P	0.450845304090904	0	lncRNA	TCONS_00006338	NA	NA	NA	NA	XLOC_002953	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002953), lincRNA [TCONS_00006338]"	chr3:184494139-184494198	hs|3q27.1	Agilent_HUMAN_G3V2	TCONS_00006338	TCONS_00006338	chr3	184494139	184494198	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_39597_PI429285431	0.9170002	A	0.9129052	A	1.00284246988282	0	lncRNA	40541-1_{1..832}	n387611|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011juy.1||-1.2967600|-0.4864086	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n387611|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc011juy.1||-1.2967600|-0.4864086	chr6	  4847759	  4848590	+	NA	NA	NA	NA	CDYL	NA	chr6:4837759-4858591	inner
LNCA_19_P00317210	3.7264092	P	3.5199032	P	1.15389024087459	0	lncRNA	TCONS_00021644	NA	NA	NA	NA	XLOC_010593	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010593), lincRNA [TCONS_00021644]"	chr13:45959026-45958967	hs|13q14.13	Agilent_HUMAN_G3V2	TCONS_00021644	TCONS_00021644	chr13	 45958967	 45959026	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011339	3.153637	P	3.247772	P	0.936833778672253	0	lncRNA	TCONS_l2_00008799	NA	NA	NA	NA	XLOC_l2_004772	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004772), lincRNA [TCONS_l2_00008799]"	chr15:85121311-85133466	hs|15q25.2	Agilent_HUMAN_G3V2	TCONS_l2_00008799	TCONS_l2_00008799	chr15	 85121311	 85133466	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003785	2.0542488	A	0.89685726	A	2.2305377117587	0	lncRNA	TCONS_00009146	NA	NA	NA	NA	XLOC_004122	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004122), lincRNA [TCONS_00009146]"	chr4:152328736-152328677	hs|4q31.3	Agilent_HUMAN_G3V2	TCONS_00009146	TCONS_00009146	chr4	152328677	152328736	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002466	1.2131696	A	0.90043676	A	1.24205825464774	0	lncRNA	TCONS_00004319	NA	NA	NA	NA	XLOC_002181	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002181), lincRNA [TCONS_00004319]"	chr2:81152645-81152586	hs|2p12	Agilent_HUMAN_G3V2	TCONS_00004319	TCONS_00004319	chr2	 81152586	 81152645	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013108	3.7204382	P	4.5248985	P	0.572576236162042	0	lncRNA	THC2506834	NA	NA	NA	NA	XLOC_l2_013153	NA	NA	THC2506834	NA	"BROAD Institute lincRNA (XLOC_l2_013153), lincRNA [TCONS_l2_00024967]"	chr6:147171387-147171328	hs|6q24.3	Agilent_HUMAN_G3V2	THC2506834	THC2506834	chr6	147171328	147171387	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008242	0.9269513	A	0.92588264	A	1.00074101308062	0	lncRNA	THC2622800	NA	NA	NA	NA	XLOC_010470	NA	NA	THC2622800	NA	"BROAD Institute lincRNA (XLOC_010470), lincRNA [TCONS_00022209]"	chr13:091786417-091786476	hs|13q31.3	Agilent_HUMAN_G3V2	THC2622800	THC2622800	chr13	 91786417	 91786476	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002827	0.92490447	A	1.7057074	A	0.582042767948797	0	lncRNA	ENST00000440556	NA	NA	NA	NA	XLOC_002978	NA	ENST00000440556	NA	NA	"BROAD Institute lincRNA (XLOC_002978), lincRNA [TCONS_00005699]"	chr3:194005095-194005154	hs|3q29	Agilent_HUMAN_G3V2	ENST00000440556	ENST00000440556	chr3	194005095	194005154	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007628	1.0146217	A	1.4664432	A	0.731119177619743	0	lncRNA	THC2663374	NA	NA	NA	NA	XLOC_009887	NA	NA	THC2663374	NA	"BROAD Institute lincRNA (XLOC_009887), lincRNA [TCONS_00020568]"	chr12:114449802-114449861	hs|12q24.21	Agilent_HUMAN_G3V2	THC2663374	THC2663374	chr12	114449802	114449861	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008518	3.4158878	P	1.0391399	A	5.19364678129593	0	lncRNA	ENST00000553678	NA	NA	NA	NA	XLOC_010890	NA	ENST00000553678	NA	NA	"BROAD Institute lincRNA (XLOC_010890), lincRNA [TCONS_00023024]"	chr14:85995535-85995594	hs|14q31.3	Agilent_HUMAN_G3V2	ENST00000553678	ENST00000553678	chr14	 85995535	 85995594	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003206	0.99086666	A	1.0322912	A	0.97169500647544	0	lncRNA	TCONS_00006753	NA	NA	NA	NA	XLOC_003384	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003384), lincRNA [TCONS_00006753]"	chr3:193928418-193922712	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00006753	TCONS_00006753	chr3	193922712	193928418	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009099	0.928813	A	0.9888284	A	0.959253879747132	0	lncRNA	AK093211	NA	AK093211	NA	Hs.266768	LOC283854	uncharacterized LOC283854	NA	THC2617890	NA	"BROAD Institute lincRNA (XLOC_011724), lincRNA [TCONS_00024843]"	chr16:52305726-52305782	hs|16q12.1	Agilent_HUMAN_G3V2	AK093211	AK093211	chr16	 52305726	 52305782	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19891_PI429285431	0.923209	A	0.92851406	A	0.996329565192456	0	lncRNA	21546-2_{3001..3485}	lnc-TWSG1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-TWSG1-1:1	chr18	  9509240	  9509724	+	lnc-TWSG1-1	lnc-TWSG1-1:1	ENSG00000266805.1	RP11-61L19.1	RALBP1	"hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70chr18:9496240-9519724"	NA	inner
CUST_19744_PI429285431	7.2993393	P	7.183653	P	1.08349034679493	0	lncRNA	21402-1_{1..717}	lnc-TUBA1C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TUBA1C-2:1	chr12	 49486613	 49487329	+	lnc-TUBA1C-2	lnc-TUBA1C-2:1	ENSG00000257346.1	RP11-386G11.8	LMBR1L	"hg19_refFlat_DHH:range=chr12:49483642-494882955'pad=0,hg19_refFlat_DHH:range=chr12:49483642-494882955'pad=0 3'pad=0 strand=- repeatMasking=none,-102.20chr12:49490922-49496984"	NA	inner
CUST_4461_PI429285431	2.327391	A	1.5819542	A	1.67648177533946	0	lncRNA	4411-1_{1..1950}	"transcript_id ""ENST00000498967.2"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000498967.2"" | genecode_v17"	chr12	124066767	124068716	-	ENSG00000247373.2	ENST00000498967.2	RP11-486O12.2	RP11-486O12.2-001	TMED2	"hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-77.70;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-70.50;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_TMED2:range=chr12:124069184-1240812765'pad=0,hg19_refFlat_TMED2:range=chr12:124069184-1240812765'pad=0 3'pad=0 strand=+ repeatMasking=none,-98.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50chr12:124069076-124079662"	NA	inner
LNCA_33_P3275495	6.3747134	P	6.38345	P	0.993962549437399	0	lncRNA	XR_108366	XR_108366	XR_108366	   400743	Hs.522935	LOC400743	uncharacterized LOC400743	NA	THC2622300	NA	"PREDICTED: Homo sapiens hypothetical LOC400743 (LOC400743), miscRNA [XR_108366]"	chr1:17521100-17521159	hs|1p36.13	Agilent_HUMAN_G3V2	XR_108366	XR_108366	chr1	 17521100	 17521159	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010322	3.5701602	P	3.4234188	P	1.1070661274631	0	lncRNA	TCONS_00029300	NA	NA	NA	NA	XLOC_014097	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014097), lincRNA [TCONS_00029300]"	chr21:44257001-44256942	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029300	TCONS_00029300	chr21	 44256942	 44257001	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003876	0.9155071	A	0.8951998	A	1.01417548034913	0	lncRNA	ENST00000502419	NA	NA	NA	NA	XLOC_003832	NA	ENST00000502419	THC2668196	NA	"BROAD Institute lincRNA (XLOC_003832), lincRNA [TCONS_00008978]"	chr4:189081874-189081933	hs|4q35.2	Agilent_HUMAN_G3V2	ENST00000502419	ENST00000502419	chr4	189081874	189081933	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006991	3.641294	P	5.762878	P	0.229794472376023	0	lncRNA	TCONS_00018499	NA	NA	NA	NA	XLOC_008810	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008810), lincRNA [TCONS_00018499]"	chr10:48497508-48497449	hs|10q11.22	Agilent_HUMAN_G3V2	TCONS_00018499	TCONS_00018499	chr10	 48497449	 48497508	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007004	3.951683	P	3.9782865	P	0.981728838121836	0	lncRNA	THC2671510	NA	NA	NA	NA	XLOC_008855	NA	NA	THC2671510	NA	"BROAD Institute lincRNA (XLOC_008855), lincRNA [TCONS_00018537]"	chr10:075540630-075540571	hs|10q22.2	Agilent_HUMAN_G3V2	THC2671510	THC2671510	chr10	 75540571	 75540630	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006324	6.2631617	P	6.122512	P	1.10240145706988	0	lncRNA	TCONS_00016487	NA	NA	NA	NA	XLOC_007865	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007865), lincRNA [TCONS_00016487]"	chr9:132101235-132101176	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_00016487	TCONS_00016487	chr9	132101176	132101235	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004458	1.9572768	A	2.688144	A	0.602541618867971	0	lncRNA	TCONS_00010531	NA	NA	NA	NA	XLOC_005051	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005051), lincRNA [TCONS_00010531]"	chr5:149719892-149719833	hs|5q32	Agilent_HUMAN_G3V2	TCONS_00010531	TCONS_00010531	chr5	149719833	149719892	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00810806	8.458722	P	8.903746	P	0.734572096539648	0	lncRNA	ENST00000444663	XR_110118	XR_110118	NA	NA	NA	0	ENST00000444663	THC2709754	NA	"PREDICTED: Homo sapiens hypothetical LOC100507253 (LOC100507253), miscRNA [XR_110118]"	chr13:44722084-44722143	hs|13q14.11	Agilent_HUMAN_G3V2	ENST00000444663	ENST00000444663	chr13	 44722084	 44722143	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007656	0.92670196	A	0.9057062	A	1.01465956454881	0	lncRNA	TCONS_00020626	NA	NA	NA	NA	XLOC_009936	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009936), lincRNA [TCONS_00020626]"	chr12:126591819-126591878	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020626	TCONS_00020626	chr12	126591819	126591878	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013283	1.01516	A	1.012691	A	1.00171284563597	0	lncRNA	TCONS_l2_00026402	NA	NA	NA	NA	XLOC_l2_013730	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013730), lincRNA [TCONS_l2_00026402]"	chr7:17503111-17503052	hs|7p21.1	Agilent_HUMAN_G3V2	TCONS_l2_00026402	TCONS_l2_00026402	chr7	 17503052	 17503111	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42765_PI429285431	1.011024	A	1.0408808	A	0.979517518374087	0	lncRNA	45735-1_{1..82}	ENST00000364430 ncrna:snoRNA chromosome:GRCh37:15:25465644:25465725:1 gene:ENSG00000201300 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364430 ncrna:snoRNA chromosome:GRCh37:15:25465644:25465725:1 gene:ENSG00000201300 gene_biotype:snoRNA transcript_biotype:snoRNA	chr15	 25465644	 25465725	+	ENSG00000201300	ENST00000364430	NA	NA	SNRPN	NA	chr15:25455644-25475725	inter
LNCA_21_P0012849	1.0099694	A	1.0397301	A	0.979582767623609	0	lncRNA	TCONS_l2_00022506	NA	NA	NA	NA	XLOC_l2_011744	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011744), lincRNA [TCONS_l2_00022506]"	chr5:124400908-124400967	hs|5q23.2	Agilent_HUMAN_G3V2	TCONS_l2_00022506	TCONS_l2_00022506	chr5	124400908	124400967	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006523	1.0073785	A	1.039319	A	0.978103811824529	0	lncRNA	TCONS_00017288	NA	NA	NA	NA	XLOC_008109	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008109), lincRNA [TCONS_00017288]"	chrX:6687478-6687419	hs|Xp22.31	Agilent_HUMAN_G3V2	TCONS_00017288	TCONS_00017288	chrX	  6687419	  6687478	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012965	1.0043674	A	1.0387392	A	0.97645685176644	0	lncRNA	ENST00000512861	NA	NA	NA	NA	XLOC_l2_011871	NA	ENST00000512861	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011871), lincRNA [TCONS_l2_00023603]"	chr5:177283799-177283858	hs|5q35.3	Agilent_HUMAN_G3V2	ENST00000512861	ENST00000512861	chr5	177283799	177283858	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013766	0.97661155	A	1.0251162	A	0.96693803869196	0	lncRNA	TCONS_l2_00030224	NA	NA	NA	NA	XLOC_l2_015536	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015536), lincRNA [TCONS_l2_00030224]"	chrX:56758611-56758670	hs|Xp11.21	Agilent_HUMAN_G3V2	TCONS_l2_00030224	TCONS_l2_00030224	chrX	 56758611	 56758670	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005896	2.2282772	A	2.4022095	A	0.886423294575268	0	lncRNA	TCONS_00015151	NA	NA	NA	NA	XLOC_007195	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007195), lincRNA [TCONS_00015151]"	chr8:122654416-122654357	hs|8q24.13	Agilent_HUMAN_G3V2	TCONS_00015151	TCONS_00015151	chr8	122654357	122654416	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36612_PI429285431	1.3691195	A	0.9300011	A	1.35577558887436	0	lncRNA	37805-1_{1..1025}	n345108|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_657|NULL|-1.3128700|-0.3074488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345108|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_657|NULL|-1.3128700|-0.3074488	chr10	 17256985	 17258009	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005698	0.9270689	A	0.9803982	A	0.963709812625168	0	lncRNA	TCONS_00014706	NA	NA	NA	NA	XLOC_006804	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006804), lincRNA [TCONS_00014706]"	chr8:57965528-57965587	hs|8q12.1	Agilent_HUMAN_G3V2	TCONS_00014706	TCONS_00014706	chr8	 57965528	 57965587	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11793_PI429285431	0.94866014	A	0.92546576	A	1.01620705135938	0	lncRNA	13374-1_{1..227}	lnc-FHIT-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FHIT-1:1	chr3	 59643972	 59644198	-	lnc-FHIT-1	lnc-FHIT-1:1	XLOC_003142	linc-C3orf67-1	NA	NA	NA	inter
LNCA_21_P0011197	0.92213637	A	0.9413032	A	0.986802427681141	0	lncRNA	ENST00000418741	NA	NA	NA	NA	XLOC_l2_003606	NA	ENST00000418741	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003606), lincRNA [TCONS_l2_00007350]"	chr13:19434823-19434882	hs|13q11	Agilent_HUMAN_G3V2	ENST00000418741	ENST00000418741	chr13	 19434823	 19434882	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013436	2.264944	A	0.9111498	A	2.55583411145754	0	lncRNA	ENST00000442578	NA	NA	NA	NA	XLOC_l2_013873	NA	ENST00000442578	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013873), lincRNA [TCONS_l2_00027391]"	chr7:65874189-65874130	hs|7q11.21	Agilent_HUMAN_G3V2	ENST00000442578	ENST00000442578	chr7	 65874130	 65874189	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_5619_PI429285431	0.928362	A	0.9119434	A	1.01144551062054	0	lncRNA	5547-1_{1..483}	"transcript_id ""ENST00000567477.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000567477.1"" | genecode_v17"	chr16	 75872671	 75873153	-	ENSG00000261313.1	ENST00000567477.1	RP11-2C15.1	RP11-2C15.1-003	NA	NA	NA	inter
LNCA_21_P0003199	4.0666313	P	4.18638	P	0.920347950127608	0	lncRNA	TCONS_00006729	NA	NA	NA	NA	XLOC_003364	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003364), lincRNA [TCONS_00006729]"	chr3:187553740-187553681	hs|3q27.3	Agilent_HUMAN_G3V2	TCONS_00006729	TCONS_00006729	chr3	187553681	187553740	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49336_PI429285431	7.32051	P	7.1272106	P	1.14337559354846	0	lncRNA	53149-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00023773 range=chr5:70423728-70510559 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00023773 range=chr5:70423728-70510559 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr5	 70423728	 70426727	-	NA	NA	NA	NA	LOC100652870	"hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0,hg19_refFlat_SLC39A14:range=chr8:22262224-222915175'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.00;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.70chr5:70519357-70519728"	NA	inter
LNCA_21_P0010035	1.7034777	A	2.5338044	A	0.562401871353704	0	lncRNA	TCONS_00028377	NA	NA	NA	NA	XLOC_013734	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013734), lincRNA [TCONS_00028377]"	chr20:36314505-36314446	hs|20q11.23	Agilent_HUMAN_G3V2	TCONS_00028377	TCONS_00028377	chr20	 36314446	 36314505	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007570	3.7698026	P	3.6419368	P	1.09267609325905	0	lncRNA	THC2720680	NA	NA	NA	NA	XLOC_009782	NA	NA	THC2720680	NA	"BROAD Institute lincRNA (XLOC_009782), lincRNA [TCONS_00020450]"	chr12:059524488-059524547	hs|12q14.1	Agilent_HUMAN_G3V2	THC2720680	THC2720680	chr12	 59524488	 59524547	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001054	1.8060398	A	0.8955265	A	1.87971416757206	0	lncRNA	ENST00000453569	XR_110854	XR_110854	NA	Hs.98665	XLOC_000546	NA	ENST00000453569	THC2649473	NA	"PREDICTED: Homo sapiens hypothetical LOC100506899 (LOC100506899), miscRNA [XR_110854]"	chr1:209148588-209148647	hs|1q32.2	Agilent_HUMAN_G3V2	ENST00000453569	ENST00000453569	chr1	209148588	209148647	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31528_PI429285431	0.92551637	A	0.9035979	A	1.01530872182758	0	lncRNA	33285-1_{1..1427}	n338014|BC036630|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|401|NULL|-1.3242100|-0.4199087	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n338014|BC036630|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|401|NULL|-1.3242100|-0.4199087	chr1	 75588202	 75589628	-	NA	NA	NA	NA	LHX8	NA	chr1:75594119-75599612	inter
CUST_3754_PI429285431	0.9178904	A	0.908972	A	1.00620091034982	0	lncRNA	3723-1_{1..2685}	"transcript_id ""ENST00000415469.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000415469.1"" | genecode_v17"	chr10	 86039736	 86042420	+	ENSG00000229404.1	ENST00000415469.1	LINC00858	LINC00858-001	NA	NA	NA	inter
LNCA_21_P0010001	0.9275439	A	0.90353125	A	1.01678358872844	0	lncRNA	TCONS_00028312	NA	NA	NA	NA	XLOC_013647	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013647), lincRNA [TCONS_00028312]"	chr20:7126855-7126796	hs|20p12.3	Agilent_HUMAN_G3V2	TCONS_00028312	TCONS_00028312	chr20	  7126796	  7126855	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008661	6.00793	P	5.8230157	P	1.13674944522889	0	lncRNA	TCONS_00023479	NA	NA	NA	NA	XLOC_011327	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011327), lincRNA [TCONS_00023479]"	chr15:80490170-80490229	hs|15q25.1	Agilent_HUMAN_G3V2	TCONS_00023479	TCONS_00023479	chr15	 80490170	 80490229	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48800_PI429285431	0.92035526	A	0.90963227	A	1.007460300695	0	lncRNA	52638-1_{1..2980}	hg19_lincRNAsTranscripts_TCONS_l2_00014300 range=chr2:234702859-234730909 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014300 range=chr2:234702859-234730909 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr2	234702859	234705838	+	NA	NA	NA	NA	HEATR7B1	NA	chr2:234692859-234740909	inter
LNCA_21_P0009121	4.7934484	P	5.1451373	P	0.783666157002122	0	lncRNA	TCONS_00025003	NA	NA	NA	NA	XLOC_011940	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011940), lincRNA [TCONS_00025003]"	chr16:52092302-52082683	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00025003	TCONS_00025003	chr16	 52082683	 52092302	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001920	1.4772418	A	0.90655386	A	1.48523162510097	0	lncRNA	ENST00000421326	NA	NA	NA	NA	XLOC_001692	NA	ENST00000421326	THC2659503	NA	"BROAD Institute lincRNA (XLOC_001692), lincRNA [TCONS_00003013]"	chr2:140235184-140235243	hs|2q22.1	Agilent_HUMAN_G3V2	ENST00000421326	ENST00000421326	chr2	140235184	140235243	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15617_PI429285431	0.9766236	A	0.9273601	A	1.03473655297596	0	lncRNA	17304-1_{1..2062}	lnc-TRIML2-6:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-TRIML2-6:4	chr4	189717890	189719951	-	lnc-TRIML2-6	lnc-TRIML2-6:4	XLOC_004227	linc-TRIML2-2	NA	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60"	NA	inter
LNCA_21_P0001554	1.0170931	A	1.0332161	A	0.988886603179644	0	lncRNA	TCONS_00001603	NA	NA	NA	NA	XLOC_000933	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000933), lincRNA [TCONS_00001603]"	chr1:98398961-98398902	hs|1p21.3	Agilent_HUMAN_G3V2	TCONS_00001603	TCONS_00001603	chr1	 98398902	 98398961	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13278_PI429285431	2.401008	A	2.7430158	A	0.788942575385025	0	lncRNA	14909-1_{1..456}	lnc-CA6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-CA6-1:1	chr1	  8939624	  8940079	+	lnc-CA6-1	lnc-CA6-1:1	XLOC_000044	linc-CA6	ENO1	NA	chr1:8929624-8939151	inter
LNCA_21_P0014693	1.0039263	A	1.0387902	A	0.976123841351025	0	lncRNA	ENST00000451775	XR_111729	XR_111729	NA	Hs.675997	LOC100506847	NA	ENST00000451775	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506847 (LOC100506847), miscRNA [XR_111729]"	chr17:57184952-57195343	hs|17q22	Agilent_HUMAN_G3V2	ENST00000451775	ENST00000451775	chr17	 57184952	 57195343	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008247	0.9682805	A	1.0209086	A	0.964178322981051	0	lncRNA	TCONS_00022239	NA	NA	NA	NA	XLOC_010544	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010544), lincRNA [TCONS_00022239]"	chr13:27819893-27819834	hs|13q12.2	Agilent_HUMAN_G3V2	TCONS_00022239	TCONS_00022239	chr13	 27819834	 27819893	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005977	6.4676433	P	6.3589444	P	1.07825536917989	0	lncRNA	TCONS_00015528	NA	NA	NA	NA	XLOC_007235	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007235), lincRNA [TCONS_00015528]"	chr8:137249633-137249574	hs|8q24.23	Agilent_HUMAN_G3V2	TCONS_00015528	TCONS_00015528	chr8	137249574	137249633	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009278	2.4369311	A	2.7704928	A	0.793574899712775	0	lncRNA	THC2685596	NA	NA	NA	NA	XLOC_012317	NA	NA	THC2685596	NA	"BROAD Institute lincRNA (XLOC_012317), lincRNA [TCONS_00025504]"	chr17:075563615-075563674	hs|17q25.3	Agilent_HUMAN_G3V2	THC2685596	THC2685596	chr17	 75563615	 75563674	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004165	0.9243964	A	0.96191514	A	0.974329234993753	0	lncRNA	ENST00000506337	NA	NA	NA	NA	XLOC_004946	NA	ENST00000506337	NA	NA	"BROAD Institute lincRNA (XLOC_004946), lincRNA [TCONS_00009744]"	chr5:103716434-103716375	hs|5q21.2	Agilent_HUMAN_G3V2	ENST00000506337	ENST00000506337	chr5	103716375	103716434	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002502	6.747169	P	7.0235243	P	0.825674296797477	0	lncRNA	TCONS_00004440	NA	NA	NA	NA	XLOC_002313	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002313), lincRNA [TCONS_00004440]"	chr2:128458310-128458251	hs|2q14.3	Agilent_HUMAN_G3V2	TCONS_00004440	TCONS_00004440	chr2	128458251	128458310	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20734_PI429285431	0.92450166	A	0.9201585	A	1.00301498506125	0	lncRNA	22368-1_{1..325}	lnc-TRIM41-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TRIM41-1:5	chr5	180629200	180629524	+	lnc-TRIM41-1	lnc-TRIM41-1:5	ENSG00000250900.2	CTC-338M12.6	TRIM7	NA	chr5:180620924-180632177	inner
LNCA_21_P0001035	0.91507524	A	0.918879	A	0.997366907166684	0	lncRNA	ENST00000439633	NA	NA	NA	NA	XLOC_000495	NA	ENST00000439633	NA	NA	"BROAD Institute lincRNA (XLOC_000495), lincRNA [TCONS_00000349]"	chr1:185534650-185534709	hs|1q25.3	Agilent_HUMAN_G3V2	ENST00000439633	ENST00000439633	chr1	185534650	185534709	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00807468	4.7711296	P	4.572624	P	1.1475091043158	0	lncRNA	TCONS_00012114	NA	NA	NA	NA	XLOC_005647	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005647), lincRNA [TCONS_00012114]"	chr6:25998902-25998843	hs|6p22.2	Agilent_HUMAN_G3V2	TCONS_00012114	TCONS_00012114	chr6	 25998843	 25998902	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003067	2.1184943	A	1.1288054	A	1.98575673991575	0	lncRNA	TCONS_00006328	NA	NA	NA	NA	XLOC_002945	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002945), lincRNA [TCONS_00006328]"	chr3:182699235-182704365	hs|3q26.33	Agilent_HUMAN_G3V2	TCONS_00006328	TCONS_00006328	chr3	182699235	182704365	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011823	2.0132625	A	0.90159494	A	2.16095279867679	0	lncRNA	TCONS_l2_00013838	NA	NA	NA	NA	XLOC_l2_007449	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007449), lincRNA [TCONS_l2_00013838]"	chr2:98291195-98291254	hs|2q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00013838	TCONS_l2_00013838	chr2	 98291195	 98291254	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003054	0.92763495	A	0.90325356	A	1.01704350277	0	lncRNA	TCONS_00006293	NA	NA	NA	NA	XLOC_002900	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002900), lincRNA [TCONS_00006293]"	chr3:164405708-164405767	hs|3q26.1	Agilent_HUMAN_G3V2	TCONS_00006293	TCONS_00006293	chr3	164405708	164405767	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004679	3.2553961	P	0.90386593	A	5.10365274226156	0	lncRNA	ENST00000449069	NA	NA	NA	NA	XLOC_005430	NA	ENST00000449069	NA	NA	"BROAD Institute lincRNA (XLOC_005430), lincRNA [TCONS_00011357]"	chr6:112222192-112222251	hs|6q21	Agilent_HUMAN_G3V2	ENST00000449069	ENST00000449069	chr6	112222192	112222251	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25756_PI429285431	0.9686538	A	0.93482196	A	1.02372756816747	0	lncRNA	27282-1_{1..750}	lnc-FAM184B-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-FAM184B-1:1	chr4	 17615765	 17616514	-	lnc-FAM184B-1	lnc-FAM184B-1:1	ENSG00000249502.1	AC006160.5	LAP3	NA	chr4:17605765-17609590	inter
LNCA_21_P0004828	0.92193794	A	0.9806292	A	0.960134710053208	0	lncRNA	TCONS_00011666	NA	NA	NA	NA	XLOC_005148	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005148), lincRNA [TCONS_00011666]"	chr6:6681545-6681604	hs|6p25.1	Agilent_HUMAN_G3V2	TCONS_00011666	TCONS_00011666	chr6	  6681545	  6681604	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012277	2.6723475	A	1.0280372	A	3.12598379614401	0	lncRNA	TCONS_l2_00017860	NA	NA	NA	NA	XLOC_l2_009448	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009448), lincRNA [TCONS_l2_00017860]"	chr22:17140409-17140350	hs|22q11.1	Agilent_HUMAN_G3V2	TCONS_l2_00017860	TCONS_l2_00017860	chr22	 17140350	 17140409	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012802	3.8267713	P	3.1318936	A	1.61874720300196	0	lncRNA	ENST00000513106	NA	BC041818	NA	NA	LOC152586	glycosyltransferase 54 domain-containing protein	ENST00000513106	THC2607931	GO:0016758|GO:0016020|GO:0005975|GO:0005576	"BROAD Institute lincRNA (XLOC_l2_011289), lincRNA [TCONS_l2_00022007]"	chr4:141378110-141378051	hs|4q31.1	Agilent_HUMAN_G3V2	ENST00000513106	ENST00000513106	chr4	141378051	141378110	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005610	0.9333075	A	1.0012524	A	0.953995985257261	0	lncRNA	TCONS_00014415	NA	NA	NA	NA	XLOC_006582	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006582), lincRNA [TCONS_00014415]"	chr7:119856644-119856585	hs|7q31.31	Agilent_HUMAN_G3V2	TCONS_00014415	TCONS_00014415	chr7	119856585	119856644	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013696	0.9309186	A	0.99789166	A	0.954638840311922	0	lncRNA	ENST00000344538	NA	AK057820	NA	NA	XLOC_l2_014785	NA	ENST00000344538	THC2465483	NA	"BROAD Institute lincRNA (XLOC_l2_015174), lincRNA [TCONS_l2_00029285]"	chr9:42426484-42426543	hs|9p12	Agilent_HUMAN_G3V2	ENST00000344538	ENST00000344538	chr9	 42426484	 42426543	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010631	0.9179155	A	0.92489076	A	0.995176787424331	0	lncRNA	TCONS_l2_00001335	NA	NA	NA	NA	XLOC_l2_000986	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000986), lincRNA [TCONS_l2_00001335]"	chr1:87992106-87992047	hs|1p22.3	Agilent_HUMAN_G3V2	TCONS_l2_00001335	TCONS_l2_00001335	chr1	 87992047	 87992106	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008706	0.9168514	A	0.92265993	A	0.995981927947979	0	lncRNA	TCONS_00023587	NA	NA	NA	NA	XLOC_011401	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011401), lincRNA [TCONS_00023587]"	chr15:24405126-24405067	hs|15q11.2	Agilent_HUMAN_G3V2	TCONS_00023587	TCONS_00023587	chr15	 24405067	 24405126	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3089_PI429285431	1.5148437	A	0.92322475	A	1.50693683920719	0	lncRNA	3068-1_{1..473}	"transcript_id ""ENST00000518722.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000518722.1"" | genecode_v17"	chr8	 40227547	 40228019	+	ENSG00000253354.1	ENST00000518722.1	CTA-392C11.2	CTA-392C11.2-001	NA	NA	NA	inter
LNCA_21_P0014459	1.3481886	A	2.5184445	A	0.44434251773289	0	lncRNA	XR_109934	XR_109934	XR_109934	NA	Hs.622827	LOC100506494	uncharacterized LOC100506494	NA	THC2614696	NA	"PREDICTED: Homo sapiens hypothetical LOC100506494 (LOC100506494), miscRNA [XR_109934]"	chr2:105995209-105995268	hs|2q12.1	Agilent_HUMAN_G3V2	XR_109934	XR_109934	chr2	105995209	105995268	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00320907	3.2996838	P	4.614609	P	0.401946334707392	0	lncRNA	XR_109498	XR_109498	XR_109498	NA	Hs.721209	LOC100506374	uncharacterized LOC100506374	NA	THC2720183	NA	"PREDICTED: Homo sapiens hypothetical LOC100506374 (LOC100506374), miscRNA [XR_109498]"	chr19:56821760-56821819	hs|19q13.43	Agilent_HUMAN_G3V2	XR_109498	XR_109498	chr19	 56821760	 56821819	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7649_PI429285431	8.950965	P	8.640024	P	1.24051656490501	0	lncRNA	9281-1_{1..388}	lnc-SYNCRIP-2:9	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-SYNCRIP-2:9	chr6	 86387854	 86388241	-	lnc-SYNCRIP-2	lnc-SYNCRIP-2:9	ENSG00000203875	SNHG5	NA	NA	NA	inter
LNCA_21_P0009479	4.9723883	P	5.0973344	P	0.917038303696211	0	lncRNA	TCONS_00026331	NA	NA	NA	NA	XLOC_012678	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012678), lincRNA [TCONS_00026331]"	chr18:51103966-51104025	hs|18q21.2	Agilent_HUMAN_G3V2	TCONS_00026331	TCONS_00026331	chr18	 51103966	 51104025	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014622	1.2502205	A	1.0008966	A	1.18864993934208	0	lncRNA	XR_113294	XR_113294	XR_113294	NA	NA	FAM85A	"family with sequence similarity 85, member A"	NA	NA	NA	"PREDICTED: Homo sapiens family with sequence similarity 85, member A (FAM85A), miscRNA [XR_113294]"	chr8:12053883-12053942	hs|8p23.1	Agilent_HUMAN_G3V2	XR_113294	XR_113294	chr8	 12053883	 12053942	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7452_PI429285431	2.7485085	A	2.0215533	A	1.65514223423703	0	lncRNA	9095-1_{1..945}	lnc-AC009336.1-2:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-AC009336.1-2:5	chr2	177052793	177053737	-	lnc-AC009336.1-2	lnc-AC009336.1-2:5	ENSG00000224189	AC009336.23	HOXD1	NA	chr2:177053307-177055635	inter
LNCA_21_P0010570	1.7137873	A	1.040805	A	1.59436539216227	0	lncRNA	DQ983818	NA	DQ983818	NA	NA	C1orf81	chromosome 1 open reading frame 81	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000566), lincRNA [TCONS_l2_00000748]"	chr1:200926545-200926871	hs|1q32.1	Agilent_HUMAN_G3V2	DQ983818	DQ983818	chr1	200926545	200926871	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37931_PI429285431	6.18146	P	5.6562014	P	1.43919152889471	0	lncRNA	39020-1_{1..353}	n346475|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2025|NULL|-1.3121400|-0.2958027	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346475|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_2025|NULL|-1.3121400|-0.2958027	chr9	 98159445	 98159797	-	NA	NA	NA	NA	PTCH1	NA	chr9:98175399-98183970	inter
CUST_34505_PI429285431	0.9174645	A	0.9960413	A	0.946991380841673	0	lncRNA	35970-1_{1..3000}	n341381|BC034557|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3850|NULL|-0.8074680|-0.1184700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,ncbi,"	>n341381|BC034557|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3850|NULL|-0.8074680|-0.1184700	chr7	157647276	157650275	+	NA	NA	NA	NA	PTPRN2	NA	chr7:157637276-157668784	inner
LNCA_21_P0006629	0.91776943	A	0.9244343	A	0.995390918716952	0	lncRNA	ENST00000412695	NA	NA	NA	NA	XLOC_008335	NA	ENST00000412695	NA	NA	"BROAD Institute lincRNA (XLOC_008335), lincRNA [TCONS_00017754]"	chr10:790839-790898	hs|10p15.3	Agilent_HUMAN_G3V2	ENST00000412695	ENST00000412695	chr10	   790839	   790898	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010450	6.8651185	P	6.769361	P	1.06862635264309	0	lncRNA	TCONS_00029725	NA	NA	NA	NA	XLOC_014400	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014400), lincRNA [TCONS_00029725]"	chr22:46032454-46032395	hs|22q13.31	Agilent_HUMAN_G3V2	TCONS_00029725	TCONS_00029725	chr22	 46032395	 46032454	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15704_PI429285431	0.91345936	A	0.91370225	A	0.999831655652814	0	lncRNA	17392-1_{1..328}	lnc-SPATA19-1:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SPATA19-1:6	chr11	133562771	133563098	-	lnc-SPATA19-1	lnc-SPATA19-1:6	XLOC_009608	linc-OPCML	NA	NA	NA	inter
CUST_19576_PI429285431	2.853931	A	2.4628408	A	1.31138400184015	0	lncRNA	21232-1_{1..651}	lnc-ZBED1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-ZBED1-1:1	chrX	  2254426	  2255076	-	lnc-ZBED1-1	lnc-ZBED1-1:1	ENSG00000223571.1	DHRSX-IT1	DHRSX	"hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0,hg19_refFlat_DLGAP5:range=chr14:55615172-556558975'pad=0 3'pad=0 strand=- repeatMasking=none,-74.30;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.70;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-71.00;hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0,hg19_refFlat_MICAL3:range=chr22:18317216-183895785'pad=0 3'pad=0 strand=- repeatMasking=none,-73.30chrX:2244426-2264451"	NA	inner
CUST_13220_PI429285431	0.91615844	A	0.90866435	A	1.00520802219854	0	lncRNA	14848-1_{1..411}	lnc-EFCAB4B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-EFCAB4B-3:1	chr12	  3410012	  3410422	-	lnc-EFCAB4B-3	lnc-EFCAB4B-3:1	XLOC_009981	linc-FOXM1-3	NA	NA	NA	inter
LNCA_19_P00812135	4.2449565	P	6.1427693	P	0.268349889656844	0	lncRNA	ENST00000417705	NA	BC025320	NA	NA	XLOC_000670	NA	ENST00000417705	NA	NA	"BROAD Institute lincRNA (XLOC_000670), lincRNA [TCONS_00002277]"	chr1:852947-852888	hs|1p36.33	Agilent_HUMAN_G3V2	ENST00000417705	ENST00000417705	chr1	   852888	   852947	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19866_PI429285431	1.4236603	A	1.066805	A	1.28063140961056	0	lncRNA	21523-1_{1..3000}	lnc-SAP30-5:16	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SAP30-5:16	chr4	174460085	174463084	+	lnc-SAP30-5	lnc-SAP30-5:16	ENSG00000237125.3	RP11-471J12.1	HAND2	NA	chr4:174450085-174451378	inter
LNCA_21_P0006179	0.9276416	A	0.90271723	A	1.01742635444646	0	lncRNA	TCONS_00016064	NA	NA	NA	NA	XLOC_007453	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007453), lincRNA [TCONS_00016064]"	chr9:93695517-93696263	hs|9q22.2	Agilent_HUMAN_G3V2	TCONS_00016064	TCONS_00016064	chr9	 93695517	 93696263	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006957	0.92863834	A	0.9045702	A	1.01682269776037	0	lncRNA	THC2747602	NA	NA	NA	NA	XLOC_008704	NA	NA	THC2747602	NA	"BROAD Institute lincRNA (XLOC_008704), lincRNA [TCONS_00018417]"	chr10:004790170-004790111	hs|10p15.1	Agilent_HUMAN_G3V2	THC2747602	THC2747602	chr10	  4790111	  4790170	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011165	2.8821788	A	3.5612087	P	0.624585118103081	0	lncRNA	TCONS_l2_00007037	NA	NA	NA	NA	XLOC_l2_003877	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003877), lincRNA [TCONS_l2_00007037]"	chr13:114943130-114943189	hs|13q34	Agilent_HUMAN_G3V2	TCONS_l2_00007037	TCONS_l2_00007037	chr13	114943130	114943189	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009410	0.9270402	A	0.9070893	A	1.01392497176036	0	lncRNA	THC2545285	NA	NA	NA	NA	XLOC_012567	NA	NA	THC2545285	NA	"BROAD Institute lincRNA (XLOC_012567), lincRNA [TCONS_00025755]"	chr17:070320686-070320627	hs|17q24.3	Agilent_HUMAN_G3V2	THC2545285	THC2545285	chr17	 70320627	 70320686	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014664	7.9312696	P	8.022596	P	0.938659357956378	0	lncRNA	XR_110949	XR_110949	XR_110949	NA	Hs.572231	LOC100505874	uncharacterized LOC100505874	NA	THC2615031	NA	"PREDICTED: Homo sapiens hypothetical LOC100505874, transcript variant 2 (LOC100505874), miscRNA [XR_110949]"	chrUn_gl000224:102524-102583	NA	Agilent_HUMAN_G3V2	XR_110949	XR_110949	chrUn_gl000224	   102524	   102583	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41789_PI429285431	8.318624	P	8.20855	P	1.07928359466084	0	lncRNA	43366-1_{1..109}	ENST00000384911 ncrna:miRNA chromosome:GRCh37:4:65017:65125:1 gene:ENSG00000207643 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384911 ncrna:miRNA chromosome:GRCh37:4:65017:65125:1 gene:ENSG00000207643 gene_biotype:miRNA transcript_biotype:miRNA	chr4	    65017	    65125	+	ENSG00000207643	ENST00000384911	NA	NA	ZNF595	NA	chr4:55017-75125	inner
LNCA_21_P0012889	1.4837744	A	1.0211354	A	1.37806028313514	0	lncRNA	ENST00000511721	NA	NA	NA	NA	XLOC_l2_011924	NA	ENST00000511721	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011924), lincRNA [TCONS_l2_00022763]"	chr5:4968923-4968065	hs|5p15.32	Agilent_HUMAN_G3V2	ENST00000511721	ENST00000511721	chr5	  4968065	  4968923	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010065	0.9349689	A	1.0024444	A	0.954306431027474	0	lncRNA	TCONS_00028452	NA	NA	NA	NA	XLOC_013812	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013812), lincRNA [TCONS_00028452]"	chr20:55849679-55849620	hs|20q13.31	Agilent_HUMAN_G3V2	TCONS_00028452	TCONS_00028452	chr20	 55849620	 55849679	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002275	1.6028303	A	2.741921	A	0.454045662816719	0	lncRNA	TCONS_00003827	NA	NA	NA	NA	XLOC_001637	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001637), lincRNA [TCONS_00003827]"	chr2:118815295-118815354	hs|2q14.2	Agilent_HUMAN_G3V2	TCONS_00003827	TCONS_00003827	chr2	118815295	118815354	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008788	3.028191	P	3.3858852	P	0.780410881973887	0	lncRNA	TCONS_00023803	NA	NA	NA	NA	XLOC_011592	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011592), lincRNA [TCONS_00023803]"	chr15:95753599-95753540	hs|15q26.2	Agilent_HUMAN_G3V2	TCONS_00023803	TCONS_00023803	chr15	 95753540	 95753599	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004214	0.9202263	A	0.9294981	A	0.993593885180068	0	lncRNA	TCONS_00009853	NA	NA	NA	NA	XLOC_004267	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004267), lincRNA [TCONS_00009853]"	chr5:4775006-4775065	hs|5p15.32	Agilent_HUMAN_G3V2	TCONS_00009853	TCONS_00009853	chr5	  4775006	  4775065	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20898_PI429285431	1.3927835	A	0.9110022	A	1.39646682421617	0	lncRNA	22529-1_{1..660}	lnc-C16orf95-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C16orf95-1:5	chr16	 87325974	 87326633	-	lnc-C16orf95-1	lnc-C16orf95-1:5	ENSG00000261697.1	RP11-178L8.5	NA	NA	NA	inter
LNCA_21_P0011976	0.9122188	A	0.9110044	A	1.00084211231371	0	lncRNA	AK023515	NA	AK023515	NA	Hs.301715	XLOC_l2_008343	NA	NA	THC2604696	NA	"BROAD Institute lincRNA (XLOC_l2_008343), lincRNA [TCONS_l2_00014980]"	chr2:171579990-171579931	hs|2q31.1	Agilent_HUMAN_G3V2	AK023515	AK023515	chr2	171579931	171579990	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011161	0.9113953	A	0.8996317	A	1.00818723980435	0	lncRNA	ENST00000415294	NA	NA	NA	NA	XLOC_l2_003843	NA	ENST00000415294	THC2648387	NA	"BROAD Institute lincRNA (XLOC_l2_003843), lincRNA [TCONS_l2_00006995]"	chr13:106370833-106370892	hs|13q33.2	Agilent_HUMAN_G3V2	ENST00000415294	ENST00000415294	chr13	106370833	106370892	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25503_PI429285431	0.93176764	A	1.1832625	A	0.840025564957806	0	lncRNA	27033-1_{1..536}	lnc-SLC39A11-1:31	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SLC39A11-1:31	chr17	 70321934	 70322469	-	lnc-SLC39A11-1	lnc-SLC39A11-1:31	ENSG00000227036.2	LINC00511	NA	NA	NA	inter
CUST_44782_PI429285431	0.91684365	A	0.8986577	A	1.01268532467791	0	lncRNA	49321-1_{1..794}	"gi|310119803|ref|XR_108611.1| PREDICTED: Homo sapiens uncharacterized LOC100506851 (LOC100506851), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119803|ref|XR_108611.1| PREDICTED: Homo sapiens uncharacterized LOC100506851 (LOC100506851), misc_RNA"	Chr6	 80129984	 80130777	+	100506851	XR_108611.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0005921	0.9201832	A	0.89679843	A	1.0163411673173	0	lncRNA	TCONS_00015205	NA	NA	NA	NA	XLOC_006686	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006686), lincRNA [TCONS_00015205]"	chr8:1322052-1322111	hs|8p23.3	Agilent_HUMAN_G3V2	TCONS_00015205	TCONS_00015205	chr8	  1322052	  1322111	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44775_PI429285431	1.8234053	A	3.236441	A	0.37552068922774	0	lncRNA	49314-1_{1..1547}	"gi|310119790|ref|XR_108665.1| PREDICTED: Homo sapiens uncharacterized LOC100506188 (LOC100506188), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310119790|ref|XR_108665.1| PREDICTED: Homo sapiens uncharacterized LOC100506188 (LOC100506188), misc_RNA"	NA	NA	NA	NA	NA	XR_108665.1	NA	NA	NA	NA	NA	Unknown
CUST_25177_PI429285431	0.9275758	A	0.90192986	A	1.01793535180007	0	lncRNA	26708-1_{1..837}	lnc-SRP54-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SRP54-2:1	chr14	 35030332	 35031168	+	lnc-SRP54-2	lnc-SRP54-2:1	ENSG00000259135.1	RP11-671J11.4	SNX6	NA	chr14:35030618-35040466	inter
LNCA_21_P0005645	8.540158	P	8.853794	P	0.804611353263163	0	lncRNA	TCONS_00014578	NA	NA	NA	NA	XLOC_006688	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006688), lincRNA [TCONS_00014578]"	chr8:1748916-1748975	hs|8p23.3	Agilent_HUMAN_G3V2	TCONS_00014578	TCONS_00014578	chr8	  1748916	  1748975	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008695	0.9282216	A	0.90692663	A	1.01487002328354	0	lncRNA	TCONS_00023549	NA	NA	NA	NA	XLOC_011383	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011383), lincRNA [TCONS_00023549]"	chr15:100379339-100379398	hs|15q26.3	Agilent_HUMAN_G3V2	TCONS_00023549	TCONS_00023549	chr15	100379339	100379398	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013474	0.9262799	A	0.9075807	A	1.01304565946356	0	lncRNA	TCONS_l2_00027738	NA	NA	NA	NA	XLOC_l2_014190	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014190), lincRNA [TCONS_l2_00027738]"	chr8:43349830-43349889	hs|8p11.1	Agilent_HUMAN_G3V2	TCONS_l2_00027738	TCONS_l2_00027738	chr8	 43349830	 43349889	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005546	6.7591734	P	6.6945972	P	1.0457776914304	0	lncRNA	TCONS_00014014	NA	NA	NA	NA	XLOC_006661	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006661), lincRNA [TCONS_00014014]"	chr7:155000806-155000747	hs|7q36.2	Agilent_HUMAN_G3V2	TCONS_00014014	TCONS_00014014	chr7	155000747	155000806	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014314	3.8669333	P	5.270283	P	0.378050351240072	0	lncRNA	XR_109247	XR_109247	XR_109247	NA	NA	LOC100507458	uncharacterized LOC100507458	NA	THC2580199	NA	"PREDICTED: Homo sapiens hypothetical LOC100507458, transcript variant 2 (LOC100507458), miscRNA [XR_109247]"	chr16:3181728-3181669	hs|16p13.3	Agilent_HUMAN_G3V2	XR_109247	XR_109247	chr16	  3181669	  3181728	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007032	3.3334677	P	4.208505	P	0.545239769308846	0	lncRNA	TCONS_00018640	NA	NA	NA	NA	XLOC_008991	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008991), lincRNA [TCONS_00018640]"	chr10:130803561-130803502	hs|10q26.3	Agilent_HUMAN_G3V2	TCONS_00018640	TCONS_00018640	chr10	130803502	130803561	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005070	0.9308666	A	0.997808	A	0.954659790129078	0	lncRNA	TCONS_00012335	NA	NA	NA	NA	XLOC_005882	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005882), lincRNA [TCONS_00012335]"	chr6:153188643-153188584	hs|6q25.2	Agilent_HUMAN_G3V2	TCONS_00012335	TCONS_00012335	chr6	153188584	153188643	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33718_PI429285431	4.9887977	P	6.034272	P	0.484485602937122	0	lncRNA	35277-1_{1..1100}	n340496|BC035801|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2957|NULL|1.0797000|-0.1915488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340496|BC035801|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2957|NULL|1.0797000|-0.1915488	chr17	  7560034	  7561133	+	NA	NA	NA	NA	ATP1B2	"hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.40;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.40;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.90;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-86.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-58.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.90;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10chr17:7554254-7561089"	NA	inner
LNCA_21_P0014271	0.9133115	A	0.91403955	A	0.999495481507471	0	lncRNA	XR_109062	XR_109062	XR_109062	NA	NA	LOC100506258	uncharacterized LOC100506258	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506258 (LOC100506258), miscRNA [XR_109062]"	chr11:7458722-7458663	hs|11p15.4	Agilent_HUMAN_G3V2	XR_109062	XR_109062	chr11	  7458663	  7458722	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32799_PI429285431	0.9242796	A	0.90999335	A	1.00995166564223	0	lncRNA	34434-1_{1..2730}	n339444|BC040319|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1881|NULL|0.3139090|-0.3707395	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	>n339444|BC040319|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1881|NULL|0.3139090|-0.3707395	chr21	 26212863	 26215592	+	NA	NA	NA	NA	NA	"hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.10;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-80.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80"	NA	inter
LNCA_21_P0012059	0.91099	A	0.9040361	A	1.00483171143284	0	lncRNA	ENST00000458359	NA	NA	NA	NA	XLOC_l2_007931	NA	ENST00000458359	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007931), lincRNA [TCONS_l2_00015738]"	chr2:21853482-21853423	hs|2p24.1	Agilent_HUMAN_G3V2	ENST00000458359	ENST00000458359	chr2	 21853423	 21853482	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011833	3.829121	P	3.5246944	P	1.23492771682133	0	lncRNA	XR_109927	XR_109927	XR_109927	NA	NA	LOC100506328	uncharacterized LOC100506328	NA	THC2632354	NA	"PREDICTED: Homo sapiens hypothetical LOC100506328 (LOC100506328), miscRNA [XR_109927]"	chr2:102600262-102601083	hs|2q11.2	Agilent_HUMAN_G3V2	XR_109927	XR_109927	chr2	102600262	102601083	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001506	0.9270483	A	0.89664364	A	1.02129854848144	0	lncRNA	TCONS_00001498	NA	NA	NA	NA	XLOC_000839	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000839), lincRNA [TCONS_00001498]"	chr1:54377738-54377679	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_00001498	TCONS_00001498	chr1	 54377679	 54377738	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007971	0.92918384	A	0.9064162	A	1.01590650824059	0	lncRNA	CR627049	NA	CR627049	NA	Hs.528451	XLOC_010505	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010505), lincRNA [TCONS_00021912]"	chr13:112855213-112855272	hs|13q34	Agilent_HUMAN_G3V2	CR627049	CR627049	chr13	112855213	112855272	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30239_PI429285431	5.209183	P	6.091786	P	0.542387937891557	0	lncRNA	32014-1_{1..619}	n335109|AL360138|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250461|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250461|-1.4263700|-0.4320356	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335109|AL360138|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000250461|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000250461|-1.4263700|-0.4320356	chr15	 82573379	 82573997	+	NA	NA	NA	NA	FAM154B	NA	chr15:82563379-82577268	inner
LNCA_21_P0004500	3.0354197	A	3.0216362	A	1.0095997792595	0	lncRNA	TCONS_00010663	NA	NA	NA	NA	XLOC_004339	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004339), lincRNA [TCONS_00010663]"	chr5:36876234-36876293	hs|5p13.2	Agilent_HUMAN_G3V2	TCONS_00010663	TCONS_00010663	chr5	 36876234	 36876293	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25886_PI429285431	6.0331235	P	6.059487	P	0.981892167525109	0	lncRNA	27406-1_{1..469}	lnc-DAPP1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DAPP1-2:2	chr4	100958685	100959153	+	lnc-DAPP1-2	lnc-DAPP1-2:2	ENSG00000245322.2	RP11-15B17.1	NA	NA	NA	inter
LNCA_21_P0014368	5.2743545	P	5.4415	P	0.890603076161094	0	lncRNA	XR_109483	XR_109483	XR_109483	NA	NA	LOC100505754	uncharacterized LOC100505754	NA	THC2510598	NA	"PREDICTED: Homo sapiens hypothetical LOC100505754 (LOC100505754), miscRNA [XR_109483]"	chr19:48575670-48575611	hs|19q13.33	Agilent_HUMAN_G3V2	XR_109483	XR_109483	chr19	 48575611	 48575670	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004921	9.226227	P	8.945862	P	1.21450211301031	0	lncRNA	TCONS_00011921	NA	NA	NA	NA	XLOC_005429	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005429), lincRNA [TCONS_00011921]"	chr6:112197386-112197726	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00011921	TCONS_00011921	chr6	112197386	112197726	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26218_PI429285431	0.9525037	A	1.2769444	A	0.798607928451608	0	lncRNA	27727-1_{1..3000}	lnc-GJA10-3:6	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GJA10-3:6	chr6	 90583525	 90586524	+	lnc-GJA10-3	lnc-GJA10-3:6	ENSG00000118412.8	CASP8AP2	CASP8AP2	NA	chr6:90573525-90584155	inner
LNCA_21_P0004460	0.9227609	A	0.9470321	A	0.983317211191948	0	lncRNA	TCONS_00010536	NA	NA	NA	NA	XLOC_005062	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005062), lincRNA [TCONS_00010536]"	chr5:157897890-157897831	hs|5q33.3	Agilent_HUMAN_G3V2	TCONS_00010536	TCONS_00010536	chr5	157897831	157897890	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010295	6.8813925	P	7.005848	P	0.917350202942822	0	lncRNA	TCONS_00029167	NA	NA	NA	NA	XLOC_014107	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014107), lincRNA [TCONS_00029167]"	chr21:45225368-45225309	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029167	TCONS_00029167	chr21	 45225309	 45225368	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21819_PI429285431	0.92985886	A	1.6096789	A	0.624243136913437	0	lncRNA	23429-1_{1..477}	lnc-RP11-17M16.1.1-9:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RP11-17M16.1.1-9:3	chr18	 73835899	 73836375	+	lnc-RP11-17M16.1.1-9	lnc-RP11-17M16.1.1-9:3	ENSG00000263547.1	RP11-1O2.1	NA	NA	NA	inter
LNCA_21_P0004905	3.138472	P	4.027851	P	0.539846442124773	0	lncRNA	TCONS_00011878	NA	NA	NA	NA	XLOC_005369	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005369), lincRNA [TCONS_00011878]"	chr6:83125485-83125544	hs|6q14.1	Agilent_HUMAN_G3V2	TCONS_00011878	TCONS_00011878	chr6	 83125485	 83125544	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00803019	2.5548654	A	3.151329	P	0.661373158146739	0	lncRNA	XR_110300	XR_110300	XR_110300	NA	Hs.592473	LOC100506965	uncharacterized LOC100506965	NA	THC2491895	NA	"PREDICTED: Homo sapiens hypothetical LOC100506965 (LOC100506965), miscRNA [XR_110300]"	chr15:25279318-25279377	hs|15q11.2	Agilent_HUMAN_G3V2	XR_110300	XR_110300	chr15	 25279318	 25279377	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43639_PI429285431	6.4897223	P	4.375006	P	4.33104841563899	0	lncRNA	48398-1_{1..1154}	"gi|336391100|ref|NR_038849.1| Homo sapiens uncharacterized LOC100505633 (LOC100505633), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">gi|336391100|ref|NR_038849.1| Homo sapiens uncharacterized LOC100505633 (LOC100505633), non-coding RNA"	Chr1	159931014	159932167	+	100505633	NR_038849.1	NA	NA	NA	NA	NA	inter
CUST_9433_PI429285431	3.7645726	P	4.1986704	P	0.740156472244335	0	lncRNA	10939-1_{1..930}	lnc-GPA33-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-GPA33-1:4	chr1	167164629	167165558	-	lnc-GPA33-1	lnc-GPA33-1:4	XLOC_001080	linc-GPA33	POU2F1	NA	chr1:167154629-167174717	inter
LNCA_21_P0010314	1.9333534	A	4.062253	P	0.22863218278694	0	lncRNA	TCONS_00029225	NA	NA	NA	NA	XLOC_013950	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013950), lincRNA [TCONS_00029225]"	chr21:43194930-43194989	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029225	TCONS_00029225	chr21	 43194930	 43194989	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007140	3.584033	P	4.2581506	P	0.626715421989303	0	lncRNA	XR_109053	XR_109053	XR_109053	NA	Hs.672472	LOC100506066	uncharacterized LOC100506066	ENST00000430222	THC2638015	NA	"PREDICTED: Homo sapiens hypothetical LOC100506066 (LOC100506066), miscRNA [XR_109053]"	chr11:3876490-3876549	hs|11p15.4	Agilent_HUMAN_G3V2	XR_109053	XR_109053	chr11	  3876490	  3876549	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013286	3.3754454	P	1.8421097	A	2.89454322322545	0	lncRNA	TCONS_l2_00026416	NA	NA	NA	NA	XLOC_l2_013737	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013737), lincRNA [TCONS_l2_00026416]"	chr7:20629251-20628686	hs|7p21.1	Agilent_HUMAN_G3V2	TCONS_l2_00026416	TCONS_l2_00026416	chr7	 20628686	 20629251	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007659	0.92149997	A	0.8975322	A	1.01675195866361	0	lncRNA	TCONS_00020634	NA	NA	NA	NA	XLOC_009939	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009939), lincRNA [TCONS_00020634]"	chr12:127203820-127203879	hs|12q24.32	Agilent_HUMAN_G3V2	TCONS_00020634	TCONS_00020634	chr12	127203820	127203879	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_4532_PI429285431	2.7189555	A	3.1627996	A	0.735173107917981	0	lncRNA	4480-1_{1..2009}	"transcript_id ""ENST00000428272.4"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000428272.4"" | genecode_v17"	chr12	131832015	131834023	+	ENSG00000230294.4	ENST00000428272.4	RP13-507P19.2	RP13-507P19.2-001	NA	NA	NA	inter
LNCA_21_P0014603	2.1954443	A	2.4212918	A	0.855092560627059	0	lncRNA	XR_110493	XR_110493	XR_110493	NA	NA	LOC100506478	uncharacterized LOC100506478	NA	THC2622749	NA	"PREDICTED: Homo sapiens hypothetical LOC100506478 (LOC100506478), miscRNA [XR_110493]"	chr1:117682842-117682901	hs|1p13.1	Agilent_HUMAN_G3V2	XR_110493	XR_110493	chr1	117682842	117682901	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002546	1.7972095	A	1.4330087	A	1.28716838801975	0	lncRNA	TCONS_00004596	NA	NA	NA	NA	XLOC_002499	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002499), lincRNA [TCONS_00004596]"	chr2:221801795-221747491	hs|2q36.1	Agilent_HUMAN_G3V2	TCONS_00004596	TCONS_00004596	chr2	221747491	221801795	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009631	2.4842336	A	2.763317	A	0.824114442777147	0	lncRNA	TCONS_00026719	NA	NA	NA	NA	XLOC_012851	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012851), lincRNA [TCONS_00026719]"	chr18:53727866-53727807	hs|18q21.2	Agilent_HUMAN_G3V2	TCONS_00026719	TCONS_00026719	chr18	 53727807	 53727866	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17379_PI429285431	0.94301367	A	1.1689285	A	0.855052654730779	0	lncRNA	19101-1_{1..327}	lnc-TSSC4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TSSC4-2:1	chr11	  2398051	  2398377	+	lnc-TSSC4-2	lnc-TSSC4-2:1	XLOC_009027	linc-CD81-1	CD81	NA	chr11:2398547-2408200	inter
CUST_17237_PI429285431	3.6401033	P	3.8554196	P	0.861357292922973	0	lncRNA	18955-1_{1..294}	lnc-ALCAM-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-ALCAM-3:1	chr3	103730436	103730729	+	lnc-ALCAM-3	lnc-ALCAM-3:1	XLOC_002744	linc-ALCAM-2	NA	NA	NA	inter
LNCA_21_P0007147	2.0539703	A	1.0313591	A	2.03159270686178	0	lncRNA	BC065746	NA	BC065746	NA	Hs.450659	XLOC_009217	NA	NA	THC2625540	NA	"BROAD Institute lincRNA (XLOC_009217), lincRNA [TCONS_00019151]"	chr11:74694537-74694596	hs|11q13.4	Agilent_HUMAN_G3V2	BC065746	BC065746	chr11	 74694537	 74694596	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005239	1.012691	A	1.0424525	A	0.979582224427733	0	lncRNA	ENST00000447158	NA	NA	NA	NA	XLOC_006141	NA	ENST00000447158	NA	NA	"BROAD Institute lincRNA (XLOC_006141), lincRNA [TCONS_00013020]"	chr7:68511731-68511790	hs|7q11.22	Agilent_HUMAN_G3V2	ENST00000447158	ENST00000447158	chr7	 68511731	 68511790	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7437_PI429285431	0.9765233	A	0.9409695	A	1.02495018993907	0	lncRNA	9080-1_{1..676}	lnc-KIAA1147-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-KIAA1147-2:10	chr7	141437183	141437858	-	lnc-KIAA1147-2	lnc-KIAA1147-2:10	ENSG00000228775	RP5-894A10.5	WEE2	"hg19_refFlat_WEE2:range=chr7:141408559-1414301205'pad=0,hg19_refFlat_WEE2:range=chr7:141408559-1414301205'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.70chr7:141427183-141431071"	NA	inter
LNCA_21_P0005751	0.92196536	A	3.368573	P	0.183441550593701	0	lncRNA	ENST00000522390	NA	NA	NA	NA	XLOC_006903	NA	ENST00000522390	THC2732722	NA	"BROAD Institute lincRNA (XLOC_006903), lincRNA [TCONS_00014833]"	chr8:112757772-112757831	hs|8q23.3	Agilent_HUMAN_G3V2	ENST00000522390	ENST00000522390	chr8	112757772	112757831	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004534	0.9208329	A	0.9304808	A	0.993334896312252	0	lncRNA	TCONS_00010828	NA	NA	NA	NA	XLOC_004629	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004629), lincRNA [TCONS_00010828]"	chr5:171165361-171165420	hs|5q35.1	Agilent_HUMAN_G3V2	TCONS_00010828	TCONS_00010828	chr5	171165361	171165420	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003973	5.207367	P	5.3880734	P	0.882270896124869	0	lncRNA	ENST00000505844	NA	NA	NA	NA	XLOC_004308	NA	ENST00000505844	NA	NA	"BROAD Institute lincRNA (XLOC_004308), lincRNA [TCONS_00009360]"	chr5:17437236-17437295	hs|5p15.1	Agilent_HUMAN_G3V2	ENST00000505844	ENST00000505844	chr5	 17437236	 17437295	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21420_PI429285431	0.9327853	A	0.911291	A	1.01501025251538	0	lncRNA	23040-1_{1..280}	lnc-SPECC1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-SPECC1-2:1	chr17	 20226371	 20226650	+	lnc-SPECC1-2	lnc-SPECC1-2:1	ENSG00000266839.1	RP11-121A13.3	SPECC1	NA	chr17:20216371-20218068	inter
LNCA_21_P0009275	3.9530153	P	4.3916945	P	0.737809770874986	0	lncRNA	TCONS_00025499	NA	NA	NA	NA	XLOC_012314	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012314), lincRNA [TCONS_00025499]"	chr17:74831061-74831120	hs|17q25.2	Agilent_HUMAN_G3V2	TCONS_00025499	TCONS_00025499	chr17	 74831061	 74831120	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002176	0.94496495	A	0.89779735	A	1.03323441307023	0	lncRNA	ENST00000476839	NA	NA	NA	NA	XLOC_001362	NA	ENST00000476839	NA	NA	"BROAD Institute lincRNA (XLOC_001362), lincRNA [TCONS_00003585]"	chr2:15855686-15855745	hs|2p24.3	Agilent_HUMAN_G3V2	ENST00000476839	ENST00000476839	chr2	 15855686	 15855745	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_24_P896205	7.568929	P	8.317241	P	0.595299670110798	0	lncRNA	XR_132630	XR_132630	XR_132630	   645722	NA	LOC645722	uncharacterized LOC645722	NA	THC2583659	NA	"PREDICTED: Homo sapiens hypothetical LOC645722, transcript variant 2 (LOC645722), miscRNA [XR_132630]"	chr17:59470878-59470819	hs|17q23.2	Agilent_HUMAN_G3V2	XR_132630	XR_132630	chr17	 59470819	 59470878	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00323025	3.4997437	P	3.1867707	P	1.24226503260926	0	lncRNA	ENST00000467995	NA	NA	NA	NA	XLOC_002892	NA	ENST00000467995	THC2624067	NA	"BROAD Institute lincRNA (XLOC_002892), lincRNA [TCONS_00005634]"	chr3:156817509-156817568	hs|3q25.31	Agilent_HUMAN_G3V2	ENST00000467995	ENST00000467995	chr3	156817509	156817568	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005449	6.6295323	P	7.1333985	P	0.705214380972164	0	lncRNA	TCONS_00013649	NA	NA	NA	NA	XLOC_006303	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006303), lincRNA [TCONS_00013649]"	chr7:155008596-155008655	hs|7q36.2	Agilent_HUMAN_G3V2	TCONS_00013649	TCONS_00013649	chr7	155008596	155008655	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0000956	2.3153548	A	2.9780846	A	0.631681926522091	0	lncRNA	ENST00000457706	NA	NA	NA	NA	XLOC_000087	NA	ENST00000457706	NA	NA	"BROAD Institute lincRNA (XLOC_000087), lincRNA [TCONS_00000166]"	chr1:21917621-21917680	hs|1p36.12	Agilent_HUMAN_G3V2	ENST00000457706	ENST00000457706	chr1	 21917621	 21917680	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_950_PI429285431	10.832765	P	10.6458235	P	1.13834786914598	0	lncRNA	940-1_{1..733}	"transcript_id ""ENST00000455131.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000455131.1"" | genecode_v17"	chr2	 87755024	 87755756	+	ENSG00000222041.6	ENST00000455131.1	LINC00152	LINC00152-011	NA	NA	NA	inter
LNCA_21_P0014838	6.64414	P	7.0095015	P	0.776274337467999	0	lncRNA	XR_132702	XR_132702	XR_132702	NA	NA	LOC100505471	putative uncharacterized protein encoded by NCRNA00269-like	NA	THC2680498	NA	"PREDICTED: Homo sapiens putative uncharacterized protein encoded by NCRNA00269-like (LOC100505471), miscRNA [XR_132702]"	chr2:145221618-145221559	hs|2q22.3	Agilent_HUMAN_G3V2	XR_132702	XR_132702	chr2	145221559	145221618	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24067_PI429285431	1.805677	A	2.9935498	A	0.438949598547958	0	lncRNA	25617-1_{1..572}	lnc-MOCS3-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MOCS3-1:1	chr20	 49560894	 49561465	+	lnc-MOCS3-1	lnc-MOCS3-1:1	ENSG00000259456.1	RP5-914P20.5	DPM1	NA	chr20:49551405-49571316	inner
LNCA_21_P0004819	3.5560925	P	3.481461	P	1.05309201584893	0	lncRNA	XR_132521	XR_132521	XR_132521	NA	Hs.188825	LOC100508120	uncharacterized LOC100508120	NA	THC2522321	NA	"PREDICTED: Homo sapiens hypothetical LOC100508120, transcript variant 1 (LOC100508120), miscRNA [XR_132521]"	chr6:2413216-2413275	hs|6p25.2	Agilent_HUMAN_G3V2	XR_132521	XR_132521	chr6	  2413216	  2413275	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21834_PI429285431	1.7120317	A	2.0049257	A	0.8162630177311	0	lncRNA	23444-1_{1..560}	lnc-ACOT12-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ACOT12-1:7	chr5	 80597106	 80597665	-	lnc-ACOT12-1	lnc-ACOT12-1:7	ENSG00000247572.2	CTC-281B15.1	ZCCHC9	"hg19_refFlat_RASGRF2:range=chr5:80256558-805215895'pad=0,hg19_refFlat_RASGRF2:range=chr5:80256558-805215895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80chr5:80597402-80607304"	NA	inter
LNCA_21_P0003919	1.9609421	A	1.0350918	A	1.89980362404604	0	lncRNA	BC095491	NA	BC095491	NA	Hs.653099	FRG1B	"FSHD region gene 1 family, member B"	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004229), lincRNA [TCONS_00009206]"	chr4:190200841-190200782	hs|4q35.2	Agilent_HUMAN_G3V2	BC095491	BC095491	chr4	190200782	190200841	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014214	1.013344	A	1.0426675	A	0.979879669237103	0	lncRNA	XR_108886	XR_108886	XR_108886	NA	NA	LOC100507056	uncharacterized LOC100507056	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507056 (LOC100507056), miscRNA [XR_108886]"	chr8:128219758-128219699	hs|8q24.21	Agilent_HUMAN_G3V2	XR_108886	XR_108886	chr8	128219699	128219758	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32386_PI429285431	8.104805	P	7.7403984	P	1.28735201528784	0	lncRNA	34063-1_{1..322}	n338977|AJ431618|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1405|NULL|-0.8938860|-0.1964741	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338977|AJ431618|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1405|NULL|-0.8938860|-0.1964741	chr2	146632087	146632408	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002464	0.9293157	A	0.99159825	A	0.957747626191595	0	lncRNA	TCONS_00004317	NA	NA	NA	NA	XLOC_002177	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002177), lincRNA [TCONS_00004317]"	chr2:79108663-79108012	hs|2p12	Agilent_HUMAN_G3V2	TCONS_00004317	TCONS_00004317	chr2	 79108012	 79108663	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004830	0.91216946	A	1.8218714	A	0.532295051731599	0	lncRNA	TCONS_00011670	NA	NA	NA	NA	XLOC_005151	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005151), lincRNA [TCONS_00011670]"	chr6:6899362-6899421	hs|6p25.1	Agilent_HUMAN_G3V2	TCONS_00011670	TCONS_00011670	chr6	  6899362	  6899421	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013288	0.91156316	A	0.9059822	A	1.003875918709	0	lncRNA	TCONS_l2_00026420	NA	NA	NA	NA	XLOC_l2_013741	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013741), lincRNA [TCONS_l2_00026420]"	chr7:22694138-22694079	hs|7p15.3	Agilent_HUMAN_G3V2	TCONS_l2_00026420	TCONS_l2_00026420	chr7	 22694079	 22694138	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3971_PI429285431	7.682576	P	8.286196	P	0.658100580701424	0	lncRNA	3941-1_{1..1781}	"transcript_id ""ENST00000413053.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,ensembl.GRCh37.72,"	">transcript_id ""ENST00000413053.1"" | genecode_v17"	chr11	 64658898	 64660678	-	ENSG00000229719.1	ENST00000413053.1	AP001187.9	AP001187.9-001	ATG2A	NA	chr11:64662004-64670921	inter
LNCA_21_P0003544	0.919412	A	0.8970456	A	1.0156240052601	0	lncRNA	XR_112703	XR_112703	XR_112703	NA	Hs.332360	LOC100509240	uncharacterized LOC100509240	ENST00000503093	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100509240 (LOC100509240), miscRNA [XR_112703]"	chr4:178607886-178607827	hs|4q34.3	Agilent_HUMAN_G3V2	XR_112703	XR_112703	chr4	178607827	178607886	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30001_PI429285431	8.34653	P	7.341736	P	2.00665694938866	0	lncRNA	31767-1_{1..209}	n334387|S79449|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216847|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216847|1.4891200|-0.5158059	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n334387|S79449|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000216847|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000216847|1.4891200|-0.5158059	chr8	101960861	101961069	-	NA	NA	NA	NA	YWHAZ	NA	chr8:101950861-101965623	inner
LNCA_21_P0005324	7.2557077	P	7.178474	P	1.05499319998901	0	lncRNA	ENST00000435466	NA	NA	NA	NA	XLOC_006561	NA	ENST00000435466	NA	NA	"BROAD Institute lincRNA (XLOC_006561), lincRNA [TCONS_00014403]"	chr7:110072927-110072868	hs|7q31.1	Agilent_HUMAN_G3V2	ENST00000435466	ENST00000435466	chr7	110072868	110072927	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009448	5.677042	P	5.656038	P	1.01466535982671	0	lncRNA	TCONS_00026270	NA	NA	NA	NA	XLOC_012618	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012618), lincRNA [TCONS_00026270]"	chr18:5887969-5888028	hs|18p11.31	Agilent_HUMAN_G3V2	TCONS_00026270	TCONS_00026270	chr18	  5887969	  5888028	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007819	0.9289404	A	0.9082141	A	1.01447006876006	0	lncRNA	TCONS_00021052	NA	NA	NA	NA	XLOC_009651	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009651), lincRNA [TCONS_00021052]"	chr12:9502609-9502668	hs|12p13.31	Agilent_HUMAN_G3V2	TCONS_00021052	TCONS_00021052	chr12	  9502609	  9502668	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009961	0.92650497	A	0.908691	A	1.01242425070374	0	lncRNA	TCONS_00028183	NA	NA	NA	NA	XLOC_013542	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013542), lincRNA [TCONS_00028183]"	chr20:46440835-46440894	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028183	TCONS_00028183	chr20	 46440835	 46440894	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009249	3.4512382	P	2.4268098	A	2.03415328703773	0	lncRNA	TCONS_00025395	NA	NA	NA	NA	XLOC_012210	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012210), lincRNA [TCONS_00025395]"	chr17:41458897-41458956	hs|17q21.31	Agilent_HUMAN_G3V2	TCONS_00025395	TCONS_00025395	chr17	 41458897	 41458956	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32807_PI429285431	4.995484	P	4.8399677	P	1.11382015183455	0	lncRNA	34442-1_{1..1008}	n339453|BC040729|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1891|NULL|-1.1339700|-0.2606344	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339453|BC040729|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1891|NULL|-1.1339700|-0.2606344	chr21	 28733482	 28734489	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003491	0.92690796	A	0.9798737	A	0.963952698667968	0	lncRNA	ENST00000503456	NA	NA	NA	NA	XLOC_004044	NA	ENST00000503456	NA	NA	"BROAD Institute lincRNA (XLOC_004044), lincRNA [TCONS_00007813]"	chr4:111524576-111524517	hs|4q25	Agilent_HUMAN_G3V2	ENST00000503456	ENST00000503456	chr4	111524517	111524576	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012980	0.9262617	A	0.97565293	A	0.966344008389373	0	lncRNA	ENST00000508395	NA	NA	NA	NA	XLOC_l2_011987	NA	ENST00000508395	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011987), lincRNA [TCONS_l2_00023711]"	chr5:34200985-34200926	hs|5p13.2	Agilent_HUMAN_G3V2	ENST00000508395	ENST00000508395	chr5	 34200926	 34200985	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1125_PI429285431	0.9271673	A	0.9652535	A	0.973946074221247	0	lncRNA	1114-1_{1..833}	"transcript_id ""ENST00000420548.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	">transcript_id ""ENST00000420548.1"" | genecode_v17"	chr2	146326862	146327694	-	ENSG00000225107.1	ENST00000420548.1	AC092484.1	AC092484.1-001	NA	NA	NA	inter
LNCA_21_P0005487	0.9138617	A	0.9146832	A	0.999430741680204	0	lncRNA	TCONS_00013752	NA	NA	NA	NA	XLOC_006391	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006391), lincRNA [TCONS_00013752]"	chr7:27269078-27269019	hs|7p15.2	Agilent_HUMAN_G3V2	TCONS_00013752	TCONS_00013752	chr7	 27269019	 27269078	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009334	2.25926	A	2.6308136	A	0.772949679436751	0	lncRNA	TCONS_00025698	NA	NA	NA	NA	XLOC_012526	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012526), lincRNA [TCONS_00025698]"	chr17:53661807-53658131	hs|17q22	Agilent_HUMAN_G3V2	TCONS_00025698	TCONS_00025698	chr17	 53658131	 53661807	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007583	1.5033656	A	1.1497526	A	1.2777565616376	0	lncRNA	TCONS_00020475	NA	NA	NA	NA	XLOC_009808	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009808), lincRNA [TCONS_00020475]"	chr12:76408504-76408563	hs|12q21.2	Agilent_HUMAN_G3V2	TCONS_00020475	TCONS_00020475	chr12	 76408504	 76408563	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00322314	0.9181487	A	3.5207987	P	0.16463580130746	0	lncRNA	ENST00000514050	NA	NA	NA	NA	XLOC_l2_011173	NA	ENST00000514050	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011173), lincRNA [TCONS_l2_00021909]"	chr4:82524010-82523951	hs|4q21.22	Agilent_HUMAN_G3V2	ENST00000514050	ENST00000514050	chr4	 82523951	 82524010	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00315905	0.920231	A	0.8973469	A	1.01598851950704	0	lncRNA	ENST00000505997	NA	NA	NA	NA	XLOC_004951	NA	ENST00000505997	THC2701312	NA	"BROAD Institute lincRNA (XLOC_004951), lincRNA [TCONS_00009749]"	chr5:106151197-106151138	hs|5q21.3	Agilent_HUMAN_G3V2	ENST00000505997	ENST00000505997	chr5	106151138	106151197	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013029	0.9215244	A	0.8978159	A	1.01656925227938	0	lncRNA	TCONS_l2_00024298	NA	NA	NA	NA	XLOC_l2_012614	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012614), lincRNA [TCONS_l2_00024298]"	chr6:78213545-78213604	hs|6q14.1	Agilent_HUMAN_G3V2	TCONS_l2_00024298	TCONS_l2_00024298	chr6	 78213545	 78213604	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005537	2.579868	A	3.4776244	P	0.536720761197163	0	lncRNA	TCONS_00013994	NA	NA	NA	NA	XLOC_006638	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006638), lincRNA [TCONS_00013994]"	chr7:148321850-148321791	hs|7q36.1	Agilent_HUMAN_G3V2	TCONS_00013994	TCONS_00013994	chr7	148321791	148321850	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013214	0.9296601	A	0.904306	A	1.01772945644493	0	lncRNA	TCONS_l2_00025932	NA	NA	NA	NA	XLOC_l2_013442	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013442), lincRNA [TCONS_l2_00025932]"	chr7:63545906-63545965	hs|7q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00025932	TCONS_l2_00025932	chr7	 63545906	 63545965	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003767	1.0177209	A	1.0415766	A	0.983600449942824	0	lncRNA	TCONS_00008569	NA	NA	NA	NA	XLOC_004061	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004061), lincRNA [TCONS_00008569]"	chr4:124949172-124946735	hs|4q28.1	Agilent_HUMAN_G3V2	TCONS_00008569	TCONS_00008569	chr4	124946735	124949172	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001341	1.0087942	A	1.0430712	A	0.976521017198726	0	lncRNA	TCONS_00001035	NA	NA	NA	NA	XLOC_000301	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000301), lincRNA [TCONS_00001035]"	chr1:94800366-94800425	hs|1p21.3	Agilent_HUMAN_G3V2	TCONS_00001035	TCONS_00001035	chr1	 94800366	 94800425	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002528	0.9819014	A	1.0296267	A	0.967460523846593	0	lncRNA	TCONS_00004531	NA	NA	NA	NA	XLOC_002432	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002432), lincRNA [TCONS_00004531]"	chr2:189462871-189462812	hs|2q32.2	Agilent_HUMAN_G3V2	TCONS_00004531	TCONS_00004531	chr2	189462812	189462871	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010813	5.077752	P	5.450035	P	0.772558989108278	0	lncRNA	ENST00000450890	XR_109022	XR_109022	NA	Hs.499297	XLOC_l2_001537	NA	ENST00000450890	THC2667891	NA	"PREDICTED: Homo sapiens hypothetical LOC100505562 (LOC100505562), miscRNA [XR_109022]"	chr10:33370400-33370459	hs|10p11.22	Agilent_HUMAN_G3V2	ENST00000450890	ENST00000450890	chr10	 33370400	 33370459	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46941_PI429285431	3.4592004	P	4.159012	P	0.615652598836587	0	lncRNA	51049-1_{1..653}	"gi|224465226|ref|NR_027083.1| Homo sapiens arylformamidase (AFMID), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|224465226|ref|NR_027083.1| Homo sapiens arylformamidase (AFMID), transcript variant 3, non-coding RNA"	Chr17	 76183398	 76184050	+	125061	NR_027083.1	NA	NA	NA	NA	NA	inter
CUST_7461_PI429285431	9.323879	P	10.095509	P	0.585755296761318	0	lncRNA	9104-1_{1..771}	lnc-CTR9-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-CTR9-3:4	chr11	 10899928	 10900698	+	lnc-CTR9-3	lnc-CTR9-3:4	ENSG00000247271	CTD-2003C8.1	NA	NA	NA	inter
LNCA_21_P0006820	0.9224572	A	1.5514195	A	0.646641363527913	0	lncRNA	TCONS_00018094	NA	NA	NA	NA	XLOC_008360	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008360), lincRNA [TCONS_00018094]"	chr10:4396963-4397022	hs|10p15.1	Agilent_HUMAN_G3V2	TCONS_00018094	TCONS_00018094	chr10	  4396963	  4397022	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010279	4.257118	P	3.9314702	P	1.25322703724157	0	lncRNA	TCONS_00029125	NA	NA	NA	NA	XLOC_014072	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014072), lincRNA [TCONS_00029125]"	chr21:39697590-39697531	hs|21q22.13	Agilent_HUMAN_G3V2	TCONS_00029125	TCONS_00029125	chr21	 39697531	 39697590	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007602	0.9280149	A	0.9022777	A	1.01799974497798	0	lncRNA	TCONS_00020513	NA	NA	NA	NA	XLOC_009830	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009830), lincRNA [TCONS_00020513]"	chr12:90987526-90987585	hs|12q21.33	Agilent_HUMAN_G3V2	TCONS_00020513	TCONS_00020513	chr12	 90987526	 90987585	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005765	1.5422676	A	4.992675	P	0.0914795196154829	0	lncRNA	THC2649910	NA	NA	NA	NA	XLOC_006933	NA	NA	THC2649910	NA	"BROAD Institute lincRNA (XLOC_006933), lincRNA [TCONS_00014864]"	chr8:135736075-135736134	hs|8q24.22	Agilent_HUMAN_G3V2	THC2649910	THC2649910	chr8	135736075	135736134	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002875	1.4453695	A	3.8367546	P	0.190599323002195	0	lncRNA	ENST00000502688	NA	NA	NA	NA	XLOC_003245	NA	ENST00000502688	NA	NA	"BROAD Institute lincRNA (XLOC_003245), lincRNA [TCONS_00005825]"	chr3:128719477-128719320	hs|3q21.3	Agilent_HUMAN_G3V2	ENST00000502688	ENST00000502688	chr3	128719320	128719477	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014909	4.8334064	P	3.037486	P	3.47236931882368	0	lncRNA	XR_132917	XR_132917	XR_132917	NA	NA	LOC100294338	UPF0450 protein C17orf58-like	NA	THC2726030	NA	"PREDICTED: Homo sapiens UPF0450 protein C17orf58-like (LOC100294338), miscRNA [XR_132917]"	chr17:44346284-44346343	hs|17q21.31	Agilent_HUMAN_G3V2	XR_132917	XR_132917	chr17	 44346284	 44346343	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41869_PI429285431	8.093033	P	8.231874	P	0.908248510638977	0	lncRNA	43531-1_{1..83}	ENST00000408843 ncrna:miRNA chromosome:GRCh37:12:100551034:100551116:-1 gene:ENSG00000221770 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000408843 ncrna:miRNA chromosome:GRCh37:12:100551034:100551116:-1 gene:ENSG00000221770 gene_biotype:miRNA transcript_biotype:miRNA	chr12	100551034	100551116	-	ENSG00000221770	ENST00000408843	NA	NA	NA	NA	NA	inter
LNCA_21_P0004256	0.9309019	A	0.9071451	A	1.01660328658005	0	lncRNA	TCONS_00009981	NA	NA	NA	NA	XLOC_004407	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004407), lincRNA [TCONS_00009981]"	chr5:64366255-64366314	hs|5q12.3	Agilent_HUMAN_G3V2	TCONS_00009981	TCONS_00009981	chr5	 64366255	 64366314	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52143_PI429285431	8.790203	P	8.980965	P	0.876142839579251	0	lncRNA	55667-1_{1..634}	hg19_lincRNAsTranscripts_TCONS_l2_00017903 range=chr22:21022101-21025525 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017903 range=chr22:21022101-21025525 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 21022101	 21022734	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0002291	0.92962354	A	0.9087292	A	1.01458823751636	0	lncRNA	TCONS_00003868	NA	NA	NA	NA	XLOC_001667	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001667), lincRNA [TCONS_00003868]"	chr2:130004017-130004076	hs|2q21.1	Agilent_HUMAN_G3V2	TCONS_00003868	TCONS_00003868	chr2	130004017	130004076	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15288_PI429285431	3.3497217	P	3.543868	P	0.874089976695559	0	lncRNA	16965-1_{1..379}	lnc-NAV2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-NAV2-1:1	chr11	 20151852	 20152230	+	lnc-NAV2-1	lnc-NAV2-1:1	XLOC_009084	linc-HTATIP2	NAV2	NA	chr11:20141852-20143147	inter
LNCA_21_P0006836	0.97261566	A	1.0249588	A	0.964368785541288	0	lncRNA	TCONS_00018124	NA	NA	NA	NA	XLOC_008394	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008394), lincRNA [TCONS_00018124]"	chr10:13442136-13442195	hs|10p13	Agilent_HUMAN_G3V2	TCONS_00018124	TCONS_00018124	chr10	 13442136	 13442195	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009840	0.9479488	A	1.2917053	A	0.787986872305233	0	lncRNA	TCONS_00027922	NA	NA	NA	NA	XLOC_013506	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013506), lincRNA [TCONS_00027922]"	chr20:30945589-30945648	hs|20q11.21	Agilent_HUMAN_G3V2	TCONS_00027922	TCONS_00027922	chr20	 30945589	 30945648	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0000910	9.818846	P	9.964392	P	0.904037172383799	0	lncRNA	AK094692	NA	AK094692	NA	Hs.633349	LOC284628	uncharacterized LOC284628	NA	THC2511160	NA	"BROAD Institute lincRNA (XLOC_000019), lincRNA [TCONS_00000805]"	chr1:1542657-1542716	hs|1p36.33	Agilent_HUMAN_G3V2	AK094692	AK094692	chr1	  1542657	  1542716	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00319765	5.449415	P	5.60056	P	0.900535465774618	0	lncRNA	ENST00000469178	NA	NA	NA	NA	XLOC_l2_009762	NA	ENST00000469178	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009762), lincRNA [TCONS_l2_00019818]"	chr3:72202010-72202069	hs|3p13	Agilent_HUMAN_G3V2	ENST00000469178	ENST00000469178	chr3	 72202010	 72202069	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009376	5.8792963	P	5.933229	P	0.963306830084747	0	lncRNA	TCONS_00025824	NA	NA	NA	NA	XLOC_012097	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012097), lincRNA [TCONS_00025824]"	chr17:7311172-7311231	hs|17p13.1	Agilent_HUMAN_G3V2	TCONS_00025824	TCONS_00025824	chr17	  7311172	  7311231	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012583	7.565701	P	7.8817506	P	0.803266379903708	0	lncRNA	TCONS_l2_00020484	NA	NA	NA	NA	XLOC_l2_010636	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010636), lincRNA [TCONS_l2_00020484]"	chr4:37101856-37110952	hs|4p14	Agilent_HUMAN_G3V2	TCONS_l2_00020484	TCONS_l2_00020484	chr4	 37101856	 37110952	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00803086	4.6046014	P	4.098957	P	1.41975736916125	0	lncRNA	XR_132639	XR_132639	XR_132639	NA	Hs.655037	LOC100506214	NA	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506214, transcript variant 2 (LOC100506214), miscRNA [XR_132639]"	chr17:45132534-45132475	hs|17q21.32	Agilent_HUMAN_G3V2	XR_132639	XR_132639	chr17	 45132475	 45132534	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005259	0.9206986	A	0.89776105	A	1.01602616127526	0	lncRNA	ENST00000448311	XR_108805	XR_108805	NA	NA	XLOC_006238	NA	ENST00000448311	THC2657855	NA	"PREDICTED: Homo sapiens hypothetical LOC100506682 (LOC100506682), miscRNA [XR_108805]"	chr7:127125782-127125841	hs|7q32.1	Agilent_HUMAN_G3V2	ENST00000448311	ENST00000448311	chr7	127125782	127125841	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004826	0.92418134	A	0.8993	A	1.01739600901523	0	lncRNA	AK092525	NA	AK092525	NA	Hs.436882	XLOC_005141	NA	NA	THC2624569	NA	"BROAD Institute lincRNA (XLOC_005141), lincRNA [TCONS_00011659]"	chr6:4495645-4495704	hs|6p25.1	Agilent_HUMAN_G3V2	AK092525	AK092525	chr6	  4495645	  4495704	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003191	0.9297475	A	0.90904295	A	1.01445477477412	0	lncRNA	TCONS_00006710	NA	NA	NA	NA	XLOC_003330	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003330), lincRNA [TCONS_00006710]"	chr3:176018340-176018281	hs|3q26.32	Agilent_HUMAN_G3V2	TCONS_00006710	TCONS_00006710	chr3	176018281	176018340	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004167	0.9293674	A	1.7797494	A	0.554637858344402	0	lncRNA	TCONS_00009753	NA	NA	NA	NA	XLOC_004956	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004956), lincRNA [TCONS_00009753]"	chr5:111993029-111992970	hs|5q22.2	Agilent_HUMAN_G3V2	TCONS_00009753	TCONS_00009753	chr5	111992970	111993029	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014083	4.778677	P	4.9279385	P	0.901711921080411	0	lncRNA	XR_108380	XR_108380	XR_108380	NA	NA	AGAP1-IT1	AGAP1 intronic transcript 1 (non-protein coding)	ENST00000440498	THC2616875	NA	"PREDICTED: Homo sapiens AGAP1 intronic transcript 1 (non-protein coding) (AGAP1-IT1), miscRNA [XR_108380]"	chr2:236416122-236416181	hs|2q37.2	Agilent_HUMAN_G3V2	XR_108380	XR_108380	chr2	236416122	236416181	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46912_PI429285431	2.6497908	A	2.3137236	A	1.26231082853804	0	lncRNA	51028-4_{9001..11210}	"gi|225903381|ref|NR_027418.1| Homo sapiens long intergenic non-protein coding RNA 674 (LINC00674), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|225903381|ref|NR_027418.1| Homo sapiens long intergenic non-protein coding RNA 674 (LINC00674), non-coding RNA"	NW_003871088.1	   170566	   172775	+	100499466	NR_027418.1	NA	NA	NA	"hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0,hg19_refFlat_LRRC37A:range=chr17_ctg5_hap1:415695-4586015'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0,hg19_refFlat_LRRC37A2:range=chr17:44590079-446329455'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0,hg19_refFlat_LRRC37A2:range=chr17_ctg5_hap1:197774-2406665'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0,hg19_refFlat_LRRC37B:range=chr17:30348166-303803475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.10;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-83.50;hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0,hg19_refFlat_LRRC37A:range=chr17:44372500-444150895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0,hg19_refFlat_LRRC37A3:range=chr17:62850717-628933755'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_SH3GL1:range=chr19:4361597-44003655'pad=0,hg19_refFlat_SH3GL1:range=chr19:4361597-44003655'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90"	NA	Unknown
LNCA_21_P0002513	1.0108159	A	1.0441319	A	0.977171708643175	0	lncRNA	TCONS_00004473	NA	NA	NA	NA	XLOC_002353	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002353), lincRNA [TCONS_00004473]"	chr2:151008579-151008520	hs|2q23.3	Agilent_HUMAN_G3V2	TCONS_00004473	TCONS_00004473	chr2	151008520	151008579	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009668	5.1308813	P	5.2963595	P	0.891632927125202	0	lncRNA	TCONS_00026839	NA	NA	NA	NA	XLOC_013235	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013235), lincRNA [TCONS_00026839]"	chr19:12301860-12301801	hs|19p13.2	Agilent_HUMAN_G3V2	TCONS_00026839	TCONS_00026839	chr19	 12301801	 12301860	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007000	0.9296982	A	0.9939503	A	0.956441012686554	0	lncRNA	TCONS_00018525	NA	NA	NA	NA	XLOC_008832	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008832), lincRNA [TCONS_00018525]"	chr10:62917192-62917133	hs|10q21.2	Agilent_HUMAN_G3V2	TCONS_00018525	TCONS_00018525	chr10	 62917133	 62917192	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34051_PI429285431	0.9807289	A	1.0113277	A	0.979013867146754	0	lncRNA	35582-1_{1..3000}	n340870|AK125617|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3335|NULL|2.2915500|-0.2019946	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n340870|AK125617|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3335|NULL|2.2915500|-0.2019946	chr17	 74523667	 74526666	+	NA	NA	NA	NA	PRCD	NA	chr17:74523668-74541458	inter
LNCA_21_P0013506	0.9147648	A	1.0346931	A	0.920233383847907	0	lncRNA	TCONS_l2_00028088	NA	NA	NA	NA	XLOC_l2_014423	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014423), lincRNA [TCONS_l2_00028088]"	chr8:8091599-8091540	hs|8p23.1	Agilent_HUMAN_G3V2	TCONS_l2_00028088	TCONS_l2_00028088	chr8	  8091540	  8091599	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012800	0.91293997	A	2.9910145	A	0.236830282619961	0	lncRNA	ENST00000513895	NA	NA	NA	NA	XLOC_l2_011281	NA	ENST00000513895	THC2751822	NA	"BROAD Institute lincRNA (XLOC_l2_011281), lincRNA [TCONS_l2_00022000]"	chr4:139036664-139036605	hs|4q28.3	Agilent_HUMAN_G3V2	ENST00000513895	ENST00000513895	chr4	139036605	139036664	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006603	2.946982	A	5.471359	P	0.173814819850521	0	lncRNA	TCONS_00017639	NA	NA	NA	NA	XLOC_008298	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008298), lincRNA [TCONS_00017639]"	chrY:21442374-21442433	hs|Yq11.222	Agilent_HUMAN_G3V2	TCONS_00017639	TCONS_00017639	chrY	 21442374	 21442433	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00803151	6.9689336	P	7.5975046	P	0.64681677487685	0	lncRNA	ENST00000436710	XR_108951	XR_108951	NA	NA	LOC100506119	NA	ENST00000436710	THC2610745	NA	"PREDICTED: Homo sapiens hypothetical LOC100506119, transcript variant 1 (LOC100506119), miscRNA [XR_108951]"	chr9:132104141-132104200	hs|9q34.11	Agilent_HUMAN_G3V2	ENST00000436710	ENST00000436710	chr9	132104141	132104200	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7453_PI429285431	1.0365977	A	1.1216475	A	0.942751992755458	0	lncRNA	9096-1_{1..669}	lnc-NSG1.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-NSG1.1-1:2	chr4	  4562121	  4562789	+	lnc-NSG1.1-1	lnc-NSG1.1-1:2	ENSG00000247708	RP11-323F5.2	NA	NA	NA	inter
LNCA_21_P0002164	0.912727	A	1.0874138	A	0.885959834522199	0	lncRNA	TCONS_00003562	NA	NA	NA	NA	XLOC_001338	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001338), lincRNA [TCONS_00003562]"	chr2:9715502-9715561	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_00003562	TCONS_00003562	chr2	  9715502	  9715561	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15990_PI429285431	3.614152	P	3.8912036	P	0.825275890841693	0	lncRNA	17687-2_{3001..4131}	lnc-TPM4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-TPM4-2:1	chr19	 16135698	 16136828	+	lnc-TPM4-2	lnc-TPM4-2:1	XLOC_012983	linc-TPM4-2	NA	NA	NA	inter
LNCA_21_P0004974	0.92538667	A	0.9001852	A	1.01762179139727	0	lncRNA	TCONS_00012023	NA	NA	NA	NA	XLOC_005550	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005550), lincRNA [TCONS_00012023]"	chr6:169423899-169423958	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012023	TCONS_00012023	chr6	169423899	169423958	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51317_PI429285431	0.9473196	A	0.94526374	A	1.00142602937691	0	lncRNA	54922-1_{1..579}	hg19_lincRNAsTranscripts_TCONS_l2_00008612 range=chr15:42955259-42957501 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008612 range=chr15:42955259-42957501 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr15	 42955259	 42955837	+	NA	NA	NA	NA	STARD9	NA	chr15:42945259-42967501	inner
LNCA_21_P0000965	1.0206794	A	1.0261457	A	0.996218218582391	0	lncRNA	ENST00000451375	NA	NA	NA	NA	XLOC_000144	NA	ENST00000451375	NA	NA	"BROAD Institute lincRNA (XLOC_000144), lincRNA [TCONS_00000185]"	chr1:37241292-37241351	hs|1p34.3	Agilent_HUMAN_G3V2	ENST00000451375	ENST00000451375	chr1	 37241292	 37241351	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006581	1.0209846	A	1.0342462	A	0.990849878838078	0	lncRNA	TCONS_00017536	NA	NA	NA	NA	XLOC_008222	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008222), lincRNA [TCONS_00017536]"	chrX:119251487-119251428	hs|Xq24	Agilent_HUMAN_G3V2	TCONS_00017536	TCONS_00017536	chrX	119251428	119251487	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00321858	6.487722	P	6.0285673	P	1.37473610044051	0	lncRNA	ENST00000467692	XR_109672	XR_109672	NA	NA	LOC100506403	NA	ENST00000467692	THC2540404	GO:0005515|GO:0030097|GO:0003700|GO:0046982|GO:0005509|GO:0005730|GO:0005634|GO:0003677|GO:0005524|GO:0045766|GO:0042803|GO:0043231|GO:0045944|GO:0030854|GO:0048935|GO:0030099|GO:0030853|GO:0045893|GO:0008134	"PREDICTED: Homo sapiens hypothetical LOC100506403 (LOC100506403), miscRNA [XR_109672]"	chr21:36744924-36744865	hs|21q22.12	Agilent_HUMAN_G3V2	ENST00000467692	ENST00000467692	chr21	 36744865	 36744924	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003612	2.8492959	A	2.3144088	A	1.44882877011536	0	lncRNA	TCONS_00008083	NA	NA	NA	NA	XLOC_003547	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003547), lincRNA [TCONS_00008083]"	chr4:58068072-58068131	hs|4q12	Agilent_HUMAN_G3V2	TCONS_00008083	TCONS_00008083	chr4	 58068072	 58068131	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22548_PI429285431	0.9394786	A	0.93668485	A	1.00193835612383	0	lncRNA	24135-1_{1..497}	lnc-C8orf85-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-C8orf85-1:1	chr8	118142150	118142646	+	lnc-C8orf85-1	lnc-C8orf85-1:1	ENSG00000253622.1	RP11-654G14.1	SLC30A8	NA	chr8:118132150-118152538	inner
LNCA_21_P0010735	1.4176835	A	1.0319341	A	1.30653828497506	0	lncRNA	ENST00000422858	NA	NA	NA	NA	XLOC_l2_000522	NA	ENST00000422858	THC2689169	NA	"BROAD Institute lincRNA (XLOC_l2_000522), lincRNA [TCONS_l2_00002251]"	chr1:180878018-180878077	hs|1q25.3	Agilent_HUMAN_G3V2	ENST00000422858	ENST00000422858	chr1	180878018	180878077	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52043_PI429285431	4.6428003	P	4.826736	P	0.880298247021584	0	lncRNA	55573-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00017194 range=chr21:30367200-30372267 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017194 range=chr21:30367200-30372267 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr21	 30367200	 30370199	-	NA	NA	NA	NA	LTN1	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-80.60;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-73.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-94.50;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-85.10;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0,hg19_refFlat_ZNF714:range=chr19:21281075-213011355'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.90;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-92.70;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.30;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.50;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20chr21:30357200-30365277"	NA	inter
LNCA_21_P0007377	0.93896675	A	1.1647553	A	0.855127501300514	0	lncRNA	TCONS_00019717	NA	NA	NA	NA	XLOC_009514	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009514), lincRNA [TCONS_00019717]"	chr11:79828024-79827965	hs|11q14.1	Agilent_HUMAN_G3V2	TCONS_00019717	TCONS_00019717	chr11	 79827965	 79828024	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012171	4.737503	P	4.621429	P	1.08378155570871	0	lncRNA	TCONS_l2_00016979	NA	NA	NA	NA	XLOC_l2_008991	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008991), lincRNA [TCONS_l2_00016979]"	chr21:18013179-18013238	hs|21q21.1	Agilent_HUMAN_G3V2	TCONS_l2_00016979	TCONS_l2_00016979	chr21	 18013179	 18013238	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001036	5.0699944	P	5.13142	P	0.958316690068924	0	lncRNA	ENST00000458683	NA	NA	NA	NA	XLOC_000497	NA	ENST00000458683	NA	NA	"BROAD Institute lincRNA (XLOC_000497), lincRNA [TCONS_00000350]"	chr1:187328881-187328940	hs|1q31.1	Agilent_HUMAN_G3V2	ENST00000458683	ENST00000458683	chr1	187328881	187328940	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8335_PI429285431	2.5768266	A	2.4254313	A	1.11064310935278	0	lncRNA	9917-1_{1..2568}	lnc-TIGD6-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-TIGD6-1:1	chr5	149363956	149366523	-	lnc-TIGD6-1	lnc-TIGD6-1:1	ENSG00000250052	ENST00000503576	TIGD6	"hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.20;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0,hg19_refFlat_INSL3:range=chr19:17927680-179323155'pad=0 3'pad=0 strand=- repeatMasking=none,-69.70;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.40;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-63.80;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-76.60;hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0,hg19_refFlat_CGA:range=chr6:87795474-877979185'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-88.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.60;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20chr5:149372686-149375756"	NA	inner
LNCA_21_P0002114	0.9175072	A	1.3104304	A	0.761584910757854	0	lncRNA	ENST00000429317	NA	NA	NA	NA	XLOC_002354	NA	ENST00000429317	NA	NA	"BROAD Institute lincRNA (XLOC_002354), lincRNA [TCONS_00003419]"	chr2:151091476-151091417	hs|2q23.3	Agilent_HUMAN_G3V2	ENST00000429317	ENST00000429317	chr2	151091417	151091476	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004411	1.2790279	A	0.92092675	A	1.2817377860011	0	lncRNA	TCONS_00010374	NA	NA	NA	NA	XLOC_004877	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004877), lincRNA [TCONS_00010374]"	chr5:72066517-72066458	hs|5q13.2	Agilent_HUMAN_G3V2	TCONS_00010374	TCONS_00010374	chr5	 72066458	 72066517	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003070	0.91232145	A	0.9058734	A	1.00447945055578	0	lncRNA	TCONS_00006332	NA	NA	NA	NA	XLOC_002952	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002952), lincRNA [TCONS_00006332]"	chr3:184433839-184433898	hs|3q27.1	Agilent_HUMAN_G3V2	TCONS_00006332	TCONS_00006332	chr3	184433839	184433898	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_33547_PI429285431	0.9140041	A	0.9076339	A	1.00442524879228	0	lncRNA	35115-1_{1..1805}	n340296|BC069025|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2757|NULL|-1.0614800|-0.3048459	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n340296|BC069025|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|2757|NULL|-1.0614800|-0.3048459	chr4	186509062	186510866	+	NA	NA	NA	NA	SORBS2	"hg19_refFlat_SORBS2:range=chr4:186508781-1865833515'pad=0,hg19_refFlat_SORBS2:range=chr4:186508781-1865833515'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_SORBS2:range=chr4:186508781-1865986425'pad=0,hg19_refFlat_SORBS2:range=chr4:186508781-1865986425'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_SORBS2:range=chr4:186508781-1866117255'pad=0,hg19_refFlat_SORBS2:range=chr4:186508781-1866117255'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_SORBS2:range=chr4:186508781-1865777925'pad=0,hg19_refFlat_SORBS2:range=chr4:186508781-1865777925'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80;hg19_refFlat_SORBS2:range=chr4:186508781-1866059685'pad=0,hg19_refFlat_SORBS2:range=chr4:186508781-1866059685'pad=0 3'pad=0 strand=- repeatMasking=none,-76.80chr4:186506598-186525157"	NA	inner
LNCA_21_P0011989	0.9145262	A	0.8990618	A	1.01077676068855	0	lncRNA	TCONS_l2_00015083	NA	NA	NA	NA	XLOC_l2_008416	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008416), lincRNA [TCONS_l2_00015083]"	chr2:203222246-203222187	hs|2q33.1	Agilent_HUMAN_G3V2	TCONS_l2_00015083	TCONS_l2_00015083	chr2	203222187	203222246	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007719	0.91517514	A	0.89864373	A	1.01152460261569	0	lncRNA	TCONS_00020823	NA	NA	NA	NA	XLOC_010111	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010111), lincRNA [TCONS_00020823]"	chr12:67829171-67829112	hs|12q15	Agilent_HUMAN_G3V2	TCONS_00020823	TCONS_00020823	chr12	 67829112	 67829171	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44832_PI429285431	3.7497218	P	3.9205918	P	0.888306836795462	0	lncRNA	49361-1_{1..1891}	"gi|194733768|ref|NR_024045.1| Homo sapiens retinoic acid early transcript 1K pseudogene (RAET1K), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|194733768|ref|NR_024045.1| Homo sapiens retinoic acid early transcript 1K pseudogene (RAET1K), non-coding RNA"	NA	NA	NA	NA	NA	NR_024045.1	NA	NA	NA	NA	NA	Unknown
CUST_8568_PI429285431	1.9726036	A	2.016712	A	0.969889032901878	0	lncRNA	10127-1_{1..2279}	lnc-KCNE4-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-KCNE4-1:1	chr2	223762684	223764962	+	lnc-KCNE4-1	lnc-KCNE4-1:1	ENSG00000250676	ENST00000504723	ACSL3	"hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-90.80;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.70;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-93.70;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.90;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0,hg19_refFlat_RPP30:range=chr10:92631744-926630195'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-91.50;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-42.50;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.20;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.70;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.60;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-20.20;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-75.30;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-85.60;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.30;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-37.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-77.10;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-24.30;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-73.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20chr2:223752684-223774190"	NA	inner
LNCA_21_P0013045	1.6706887	A	0.9011567	A	1.7047166958725	0	lncRNA	TCONS_l2_00024511	NA	NA	NA	NA	XLOC_l2_012791	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012791), lincRNA [TCONS_l2_00024511]"	chr6:161348943-161349002	hs|6q26	Agilent_HUMAN_G3V2	TCONS_l2_00024511	TCONS_l2_00024511	chr6	161348943	161349002	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006978	0.9279729	A	0.9099925	A	1.01254105119354	0	lncRNA	TCONS_00018460	NA	NA	NA	NA	XLOC_008759	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008759), lincRNA [TCONS_00018460]"	chr10:27587528-27587469	hs|10p12.1	Agilent_HUMAN_G3V2	TCONS_00018460	TCONS_00018460	chr10	 27587469	 27587528	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15725_PI429285431	1.2266057	A	1.0308981	A	1.14528575225039	0	lncRNA	17410-1_{1..750}	lnc-COL1A1-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COL1A1-4:2	chr17	 48365101	 48365850	-	lnc-COL1A1-4	lnc-COL1A1-4:2	XLOC_012515	linc-COL1A1-2	TMEM92	NA	chr17:48355101-48358846	inter
LNCA_21_P0011443	0.922413	A	0.942237	A	0.986353026210123	0	lncRNA	TCONS_l2_00009776	NA	NA	NA	NA	XLOC_l2_005246	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005246), lincRNA [TCONS_l2_00009776]"	chr16:59233194-59233253	hs|16q21	Agilent_HUMAN_G3V2	TCONS_l2_00009776	TCONS_l2_00009776	chr16	 59233194	 59233253	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42188_PI429285431	0.9295736	A	0.9170282	A	1.00873372701356	0	lncRNA	44254-1_{1..84}	ENST00000582647 ncrna:miRNA chromosome:GRCh37:11:90288942:90289025:-1 gene:ENSG00000266703 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000582647 ncrna:miRNA chromosome:GRCh37:11:90288942:90289025:-1 gene:ENSG00000266703 gene_biotype:miRNA transcript_biotype:miRNA	chr11	 90288942	 90289025	-	ENSG00000266703	ENST00000582647	NA	NA	NA	NA	NA	inter
LNCA_21_P0010656	0.91249084	A	1.0969411	A	0.879984330716361	0	lncRNA	TCONS_l2_00001539	NA	NA	NA	NA	XLOC_l2_001122	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001122), lincRNA [TCONS_l2_00001539]"	chr1:152616772-152616713	hs|1q21.3	Agilent_HUMAN_G3V2	TCONS_l2_00001539	TCONS_l2_00001539	chr1	152616713	152616772	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001158	3.4290092	P	2.931604	A	1.41167227458003	0	lncRNA	ENST00000435311	NA	AK056049	NA	Hs.514137	XLOC_000930	NA	ENST00000435311	THC2616635	NA	"BROAD Institute lincRNA (XLOC_000930), lincRNA [TCONS_00000585]"	chr1:96719691-96719632	hs|1p21.3	Agilent_HUMAN_G3V2	ENST00000435311	ENST00000435311	chr1	 96719632	 96719691	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22515_PI429285431	1.0599408	A	1.1461182	A	0.942015432505267	0	lncRNA	24102-1_{1..892}	lnc-SGK1-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SGK1-2:2	chr6	134861037	134861928	-	lnc-SGK1-2	lnc-SGK1-2:2	ENSG00000232310.1	RP11-557H15.4	NA	NA	NA	inter
CUST_37771_PI429285431	4.3099184	P	4.031279	P	1.21305032179202	0	lncRNA	38868-1_{1..1503}	n346280|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1830|NULL|-1.7182200|-0.2929964	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346280|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1830|NULL|-1.7182200|-0.2929964	chr6	157712883	157714385	-	NA	NA	NA	NA	C6orf35	NA	chr6:157710054-157745253	inner
LNCA_21_P0004852	4.6095343	P	4.500977	P	1.07814954399619	0	lncRNA	TCONS_00011731	NA	NA	NA	NA	XLOC_005199	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005199), lincRNA [TCONS_00011731]"	chr6:22664376-22664435	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00011731	TCONS_00011731	chr6	 22664376	 22664435	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_24_P273203	11.501804	P	10.897331	P	1.52042325856023	0	lncRNA	XR_132905	XR_132905	XR_132905	100287195	Hs.528369	LOC100287195	60S ribosomal protein L23a-like	NA	NA	NA	"PREDICTED: Homo sapiens 60S ribosomal protein L23a-like (LOC100287195), miscRNA [XR_132905]"	chr3:75673786-75673770	hs|3p12.3	Agilent_HUMAN_G3V2	XR_132905	XR_132905	chr3	 75673770	 75673786	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010155	4.140803	P	4.0865636	P	1.03831155308093	0	lncRNA	ENST00000423808	XR_132676	XR_132676	NA	Hs.651529	XLOC_013900	NA	ENST00000423808	THC2529980	NA	"PREDICTED: Homo sapiens hypothetical LOC100652994 (LOC100652994), miscRNA [XR_132676]"	chr21:29475050-29475109	hs|21q21.3	Agilent_HUMAN_G3V2	ENST00000423808	ENST00000423808	chr21	 29475050	 29475109	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51191_PI429285431	3.5983562	P	3.9776611	P	0.768807918156825	0	lncRNA	54812-1_{1..1594}	hg19_lincRNAsTranscripts_TCONS_l2_00008281 range=chr14:105542841-105553887 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00008281 range=chr14:105542841-105553887 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr14	105542841	105544434	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0013242	0.9746138	A	1.026798	A	0.964475034758136	0	lncRNA	TCONS_l2_00026028	NA	NA	NA	NA	XLOC_l2_013484	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013484), lincRNA [TCONS_l2_00026028]"	chr7:76548537-76548596	hs|7q11.23	Agilent_HUMAN_G3V2	TCONS_l2_00026028	TCONS_l2_00026028	chr7	 76548537	 76548596	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011198	0.9227917	A	0.9463392	A	0.98381059694727	0	lncRNA	ENST00000427890	NA	NA	NA	NA	XLOC_l2_003626	NA	ENST00000427890	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003626), lincRNA [TCONS_l2_00007358]"	chr13:21866934-21867562	hs|13q12.11	Agilent_HUMAN_G3V2	ENST00000427890	ENST00000427890	chr13	 21866934	 21867562	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007555	5.8394127	P	6.0696573	P	0.852490345061927	0	lncRNA	TCONS_00020413	NA	NA	NA	NA	XLOC_009740	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009740), lincRNA [TCONS_00020413]"	chr12:49457764-49457823	hs|12q13.12	Agilent_HUMAN_G3V2	TCONS_00020413	TCONS_00020413	chr12	 49457764	 49457823	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003312	0.92008257	A	0.9286477	A	0.994080692830385	0	lncRNA	TCONS_00007354	NA	NA	NA	NA	XLOC_003400	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003400), lincRNA [TCONS_00007354]"	chr3:196365934-196363440	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00007354	TCONS_00007354	chr3	196363440	196365934	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45382_PI429285431	4.8895073	P	1.948673	A	7.67855212149221	0	lncRNA	49815-1_{1..3000}	"gi|373938431|ref|NR_046106.1| Homo sapiens nucleolar protein 8 (NOL8), transcript variant 3, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|373938431|ref|NR_046106.1| Homo sapiens nucleolar protein 8 (NOL8), transcript variant 3, non-coding RNA"	Chr9	 95059640	 95062639	-	55035	NR_046106.1	NA	NA	NA	NA	NA	inter
CUST_26877_PI429285431	5.707981	P	5.8677096	P	0.895193459012017	0	lncRNA	28394-1_{1..469}	n323952|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054581|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054581|-1.0411600|-0.2412438	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n323952|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000054581|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000054581|-1.0411600|-0.2412438	chr9	131300438	131300906	+	NA	NA	NA	NA	SPTAN1	NA	chr9:131314837-131315765	inner
CUST_42023_PI429285431	0.96491635	A	1.5508735	A	0.66620719950982	0	lncRNA	43893-1_{1..110}	ENST00000584304 ncrna:miRNA chromosome:GRCh37:5:131701182:131701291:-1 gene:ENSG00000263597 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000584304 ncrna:miRNA chromosome:GRCh37:5:131701182:131701291:-1 gene:ENSG00000263597 gene_biotype:miRNA transcript_biotype:miRNA	chr5	131701182	131701291	-	ENSG00000263597	ENST00000584304	NA	NA	SLC22A5	NA	chr5:131705401-131711291	inter
LNCA_21_P0008919	5.8330874	P	5.978977	P	0.903821887672722	0	lncRNA	TCONS_00024360	NA	NA	NA	NA	XLOC_011682	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011682), lincRNA [TCONS_00024360]"	chr16:27389761-27389820	hs|16p12.1	Agilent_HUMAN_G3V2	TCONS_00024360	TCONS_00024360	chr16	 27389761	 27389820	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006398	0.9178339	A	0.8982561	A	1.01366279126873	0	lncRNA	TCONS_00016892	NA	NA	NA	NA	XLOC_007883	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007883), lincRNA [TCONS_00016892]"	chr9:137111566-137111507	hs|9q34.2	Agilent_HUMAN_G3V2	TCONS_00016892	TCONS_00016892	chr9	137111507	137111566	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013421	4.763972	P	4.558469	P	1.15308830445622	0	lncRNA	TCONS_l2_00027342	NA	NA	NA	NA	XLOC_l2_013808	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013808), lincRNA [TCONS_l2_00027342]"	chr7:45791163-45788294	hs|7p12.3	Agilent_HUMAN_G3V2	TCONS_l2_00027342	TCONS_l2_00027342	chr7	 45788294	 45791163	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008840	6.170453	P	6.2260346	P	0.962206466376919	0	lncRNA	TCONS_00024016	NA	NA	NA	NA	XLOC_011371	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011371), lincRNA [TCONS_00024016]"	chr15:96887909-96887968	hs|15q26.2	Agilent_HUMAN_G3V2	TCONS_00024016	TCONS_00024016	chr15	 96887909	 96887968	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14788_PI429285431	10.562649	P	10.478568	P	1.06001229603388	0	lncRNA	16449-1_{1..252}	lnc-BTRC-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-BTRC-2:1	chr10	103044917	103045168	+	lnc-BTRC-2	lnc-BTRC-2:1	XLOC_008586	linc-BTRC-2	NA	NA	NA	inter
LNCA_21_P0007365	1.0131751	A	1.046139	A	0.977410223462792	0	lncRNA	TCONS_00019680	NA	NA	NA	NA	XLOC_009480	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009480), lincRNA [TCONS_00019680]"	chr11:67330604-67330545	hs|11q13.2	Agilent_HUMAN_G3V2	TCONS_00019680	TCONS_00019680	chr11	 67330545	 67330604	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43343_PI429285431	4.2291884	P	4.9529877	P	0.605500770137591	0	lncRNA	48168-1_{1..3000}	"gi|383276539|ref|NR_047519.1| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|383276539|ref|NR_047519.1| Homo sapiens uncharacterized LOC643837 (LOC643837), transcript variant 1, non-coding RNA"	Chr1	   762971	   765970	+	643837	NR_047519.1	NA	NA	NA	NA	NA	inter
CUST_32162_PI429285431	4.070077	P	3.7709105	P	1.23043333964538	0	lncRNA	33863-1_{1..1433}	n338733|BC036411|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1153|NULL|-0.5659380|-0.2251416	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n338733|BC036411|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1153|NULL|-0.5659380|-0.2251416	chr13	 51835088	 51836520	+	NA	NA	NA	NA	FAM124A	NA	chr13:51825088-51846507	inner
LNCA_21_P0012197	0.98076874	A	1.03034	A	0.966223428465916	0	lncRNA	TCONS_l2_00017189	NA	NA	NA	NA	XLOC_l2_009182	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009182), lincRNA [TCONS_l2_00017189]"	chr21:29817578-29817519	hs|21q21.3	Agilent_HUMAN_G3V2	TCONS_l2_00017189	TCONS_l2_00017189	chr21	 29817519	 29817578	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006019	7.1034136	P	7.075379	P	1.01962213619299	0	lncRNA	BC021182	NA	BC021182	NA	NA	XLOC_007408	NA	ENST00000423681	THC2612324	NA	"BROAD Institute lincRNA (XLOC_007408), lincRNA [TCONS_00015695]"	chr9:76998384-76998443	hs|9q21.13	Agilent_HUMAN_G3V2	BC021182	BC021182	chr9	 76998384	 76998443	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001151	0.9621551	A	1.0198731	A	0.960782647386952	0	lncRNA	ENST00000450843	NA	NA	NA	NA	XLOC_000918	NA	ENST00000450843	THC2534167	NA	"BROAD Institute lincRNA (XLOC_000918), lincRNA [TCONS_00000564]"	chr1:93770727-93770668	hs|1p22.1	Agilent_HUMAN_G3V2	ENST00000450843	ENST00000450843	chr1	 93770668	 93770727	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44245_PI429285431	0.91630304	A	0.9157551	A	1.00037987520043	0	lncRNA	48891-1_{1..1995}	"gi|337298621|ref|NR_038976.1| Homo sapiens uncharacterized LOC339874 (LOC339874), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|337298621|ref|NR_038976.1| Homo sapiens uncharacterized LOC339874 (LOC339874), non-coding RNA"	Chr3	131043936	131045930	-	339874	NR_038976.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0007521	2.7176325	A	3.4868422	P	0.58673879871887	0	lncRNA	TCONS_00020304	NA	NA	NA	NA	XLOC_009643	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009643), lincRNA [TCONS_00020304]"	chr12:8717472-8717531	hs|12p13.31	Agilent_HUMAN_G3V2	TCONS_00020304	TCONS_00020304	chr12	  8717472	  8717531	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48083_PI429285431	3.7681088	P	3.939874	P	0.887755808621073	0	lncRNA	51959-1_{1..1608}	"gi|410170141|ref|XR_133401.2| PREDICTED: Homo sapiens putative POM121-like protein 1-like (LOC728093), partial misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410170141|ref|XR_133401.2| PREDICTED: Homo sapiens putative POM121-like protein 1-like (LOC728093), partial misc_RNA"	NA	NA	NA	NA	NA	XR_133401.2	NA	NA	NA	NA	NA	Unknown
CUST_32760_PI429285431	1.746043	A	1.5380731	A	1.15506168540689	0	lncRNA	34397-1_{1..2635}	n339396|CR618657|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1828|NULL|-1.1946200|-0.3386973	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339396|CR618657|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1828|NULL|-1.1946200|-0.3386973	chr3	 71776211	 71778845	+	NA	NA	NA	NA	EIF4E3	NA	chr3:71766211-71788846	inner
LNCA_21_P0011996	0.923384	A	0.899328	A	1.01681414142984	0	lncRNA	ENST00000444955	NA	NA	NA	NA	XLOC_l2_007184	NA	ENST00000444955	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007184), lincRNA [TCONS_l2_00015232]"	chr2:7563113-7563172	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000444955	ENST00000444955	chr2	  7563113	  7563172	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21918_PI429285431	4.8155656	P	4.772321	P	1.03042864159893	0	lncRNA	23527-1_{1..520}	lnc-GNAI1-2:8	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-GNAI1-2:8	chr7	 79088852	 79089371	+	lnc-GNAI1-2	lnc-GNAI1-2:8	ENSG00000234456.2	MAGI2-AS3	MAGI2	NA	chr7:79078852-79082890	inter
LNCA_33_P3365924	4.263207	P	4.6160493	P	0.783039885128466	0	lncRNA	ENST00000391654	XR_132982	XR_132982	NA	NA	NA	NA	ENST00000391654	THC2492557	NA	"PREDICTED: Homo sapiens hypothetical LOC100653296 (LOC100653296), miscRNA [XR_132982]"	chr19:66202-66143	hs|19p13.3	Agilent_HUMAN_G3V2	ENST00000391654	ENST00000391654	chr19	    66143	    66202	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38315_PI429285431	0.92566246	A	0.9221539	A	1.00243490805721	0	lncRNA	39364-1_{1..1494}	n382012|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uvi.1||2.0526400|-0.2757953	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n382012|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc001uvi.1||2.0526400|-0.2757953	chr13	 36432217	 36433710	+	NA	NA	NA	NA	DCLK1	NA	chr13:36422217-36487094	inner
LNCA_21_P0009575	1.0218555	A	1.0307342	A	0.993864652710374	0	lncRNA	TCONS_00026557	NA	NA	NA	NA	XLOC_012878	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012878), lincRNA [TCONS_00026557]"	chr18:70952956-70951946	hs|18q22.3	Agilent_HUMAN_G3V2	TCONS_00026557	TCONS_00026557	chr18	 70951946	 70952956	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005095	1.0163978	A	2.2861373	A	0.414734652643113	0	lncRNA	TCONS_00012375	NA	NA	NA	NA	XLOC_005942	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005942), lincRNA [TCONS_00012375]"	chr6:170337633-170337574	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012375	TCONS_00012375	chr6	170337574	170337633	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16969_PI429285431	0.9309367	A	0.9751368	A	0.969827387165732	0	lncRNA	18681-1_{1..244}	lnc-VSIG7-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-VSIG7-1:1	chr21	 11171979	 11172222	+	lnc-VSIG7-1	lnc-VSIG7-1:1	XLOC_013856	linc-POTED-4	NA	NA	NA	inter
LNCA_21_P0008577	4.987911	P	5.119826	P	0.912619256213979	0	lncRNA	BX640811	NA	BX640811	NA	Hs.513748	XLOC_011482	NA	NA	THC2493469	NA	"BROAD Institute lincRNA (XLOC_011482), lincRNA [TCONS_00023278]"	chr15:55464239-55464180	hs|15q21.3	Agilent_HUMAN_G3V2	BX640811	BX640811	chr15	 55464180	 55464239	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010549	2.6914887	A	3.1046748	A	0.75096308697149	0	lncRNA	TCONS_l2_00000536	NA	NA	NA	NA	XLOC_l2_000384	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000384), lincRNA [TCONS_l2_00000536]"	chr1:120147736-120147795	hs|1p12	Agilent_HUMAN_G3V2	TCONS_l2_00000536	TCONS_l2_00000536	chr1	120147736	120147795	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011805	0.9687615	A	1.0232134	A	0.962960215654459	0	lncRNA	TCONS_l2_00013739	NA	NA	NA	NA	XLOC_l2_007401	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007401), lincRNA [TCONS_l2_00013739]"	chr2:83059931-83093018	hs|2p12	Agilent_HUMAN_G3V2	TCONS_l2_00013739	TCONS_l2_00013739	chr2	 83059931	 83093018	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007411	6.4325166	P	6.4517713	P	0.986742326491153	0	lncRNA	TCONS_00019780	NA	NA	NA	NA	XLOC_009578	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009578), lincRNA [TCONS_00019780]"	chr11:119859955-119859896	hs|11q23.3	Agilent_HUMAN_G3V2	TCONS_00019780	TCONS_00019780	chr11	119859896	119859955	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003448	2.844633	A	2.9676068	A	0.918292838766311	0	lncRNA	ENST00000507932	NA	NA	NA	NA	XLOC_003890	NA	ENST00000507932	NA	NA	"BROAD Institute lincRNA (XLOC_003890), lincRNA [TCONS_00007719]"	chr4:14384806-14384747	hs|4p15.33	Agilent_HUMAN_G3V2	ENST00000507932	ENST00000507932	chr4	 14384747	 14384806	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010056	1.4779782	A	0.91192216	A	1.4804708042437	0	lncRNA	TCONS_00028434	NA	NA	NA	NA	XLOC_013786	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013786), lincRNA [TCONS_00028434]"	chr20:48645660-48645601	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028434	TCONS_00028434	chr20	 48645601	 48645660	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00809372	1.7296615	A	0.898671	A	1.77890627312048	0	lncRNA	XR_109905	XR_109905	XR_109905	NA	NA	LOC100505634	NA	NA	THC2685060	NA	"PREDICTED: Homo sapiens hypothetical LOC100505634 (LOC100505634), miscRNA [XR_109905]"	chr2:111964964-111964905	hs|2q13	Agilent_HUMAN_G3V2	XR_109905	XR_109905	chr2	111964905	111964964	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005716	0.9220516	A	0.8989612	A	1.01613381245686	0	lncRNA	ENST00000520273	NA	NA	NA	NA	XKR9	"XK, Kell blood group complex subunit-related family, member 9"	ENST00000520273	NA	GO:0016020|GO:0016021	"BROAD Institute lincRNA (XLOC_006836), lincRNA [TCONS_00014752]"	chr8:71702442-71702501	hs|8q13.3	Agilent_HUMAN_G3V2	ENST00000520273	ENST00000520273	chr8	 71702442	 71702501	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008618	0.92470217	A	0.9000614	A	1.01722637195016	0	lncRNA	TCONS_00023360	NA	NA	NA	NA	XLOC_011217	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011217), lincRNA [TCONS_00023360]"	chr15:39773292-39784770	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00023360	TCONS_00023360	chr15	 39773292	 39784770	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009966	4.047388	P	3.9666605	P	1.05755119172649	0	lncRNA	TCONS_00028199	NA	NA	NA	NA	XLOC_013550	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013550), lincRNA [TCONS_00028199]"	chr20:46974661-46974720	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028199	TCONS_00028199	chr20	 46974661	 46974720	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014561	9.579631	P	10.352232	P	0.585361189194331	0	lncRNA	XR_110305	XR_110305	XR_110305	NA	Hs.371110	LOC100506016	uncharacterized LOC100506016	NA	THC2604198	NA	"PREDICTED: Homo sapiens hypothetical LOC100506016 (LOC100506016), miscRNA [XR_110305]"	chr13:112809530-112809471	hs|13q34	Agilent_HUMAN_G3V2	XR_110305	XR_110305	chr13	112809471	112809530	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009971	8.106467	P	8.017946	P	1.06327958685137	0	lncRNA	TCONS_00028211	NA	NA	NA	NA	XLOC_013559	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013559), lincRNA [TCONS_00028211]"	chr20:48788918-48788977	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028211	TCONS_00028211	chr20	 48788918	 48788977	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_19231_PI429285431	0.9295105	A	0.9541492	A	0.983066761136516	0	lncRNA	20901-1_{1..457}	lnc-CCDC38-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC38-1:3	chr12	 96252015	 96252471	-	lnc-CCDC38-1	lnc-CCDC38-1:3	ENSG00000258343.1	RP11-536G4.2	SNRPF	NA	chr12:96252709-96260238	inter
LNCA_21_P0008312	3.7402475	P	4.0156794	P	0.826202940532169	0	lncRNA	TCONS_00022455	NA	NA	NA	NA	XLOC_010783	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010783), lincRNA [TCONS_00022455]"	chr14:29534431-29534490	hs|14q12	Agilent_HUMAN_G3V2	TCONS_00022455	TCONS_00022455	chr14	 29534431	 29534490	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011447	0.9302427	A	0.9967123	A	0.95497204055767	0	lncRNA	TCONS_l2_00009841	NA	NA	NA	NA	XLOC_l2_005298	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005298), lincRNA [TCONS_l2_00009841]"	chr16:76613635-76613694	hs|16q23.1	Agilent_HUMAN_G3V2	TCONS_l2_00009841	TCONS_l2_00009841	chr16	 76613635	 76613694	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007395	0.91833097	A	0.92436284	A	0.995827754418244	0	lncRNA	THC2650572	NA	NA	NA	NA	XLOC_009546	NA	NA	THC2650572	NA	"BROAD Institute lincRNA (XLOC_009546), lincRNA [TCONS_00019752]"	chr11:107984752-107984693	hs|11q22.3	Agilent_HUMAN_G3V2	THC2650572	THC2650572	chr11	107984693	107984752	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_32_P4626	6.04038	P	6.3272758	P	0.81966380648545	0	lncRNA	XR_108654	XR_108654	XR_108654	100505880	Hs.655976	LOC100505880	uncharacterized LOC100505880	NA	THC2621054	NA	"PREDICTED: Homo sapiens hypothetical LOC100505880, transcript variant 1 (LOC100505880), miscRNA [XR_108654]"	chr6:7540800-7540741	hs|6p24.3	Agilent_HUMAN_G3V2	XR_108654	XR_108654	chr6	  7540741	  7540800	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23388_PI429285431	3.8248754	P	3.7454002	P	1.05663360575696	0	lncRNA	24956-1_{1..670}	lnc-PPIAL4C-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-PPIAL4C-1:1	chr1	149429172	149429841	+	lnc-PPIAL4C-1	lnc-PPIAL4C-1:1	ENSG00000230186.1	RP5-998N21.7	NA	"hg19_refFlat_HIST2H3A:range=chr1:149812319-1498127295'pad=0,hg19_refFlat_HIST2H3A:range=chr1:149812319-1498127295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_HIST1H3A:range=chr6:26020718-260211285'pad=0,hg19_refFlat_HIST1H3A:range=chr6:26020718-260211285'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.40;hg19_refFlat_HIST2H3D:range=chr1:149784826-1497852365'pad=0,hg19_refFlat_HIST2H3D:range=chr1:149784826-1497852365'pad=0 3'pad=0 strand=- repeatMasking=none,-89.60;hg19_refFlat_HIST2H3A:range=chr1:149824217-1498246275'pad=0,hg19_refFlat_HIST2H3A:range=chr1:149824217-1498246275'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_HIST2H3C:range=chr1:149824217-1498246275'pad=0,hg19_refFlat_HIST2H3C:range=chr1:149824217-1498246275'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_HIST1H3D:range=chr6:26197068-261974785'pad=0,hg19_refFlat_HIST1H3D:range=chr6:26197068-261974785'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40;hg19_refFlat_HIST2H3C:range=chr1:149812319-1498127295'pad=0,hg19_refFlat_HIST2H3C:range=chr1:149812319-1498127295'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_HIST3H3:range=chr1:228612616-2286130265'pad=0,hg19_refFlat_HIST3H3:range=chr1:228612616-2286130265'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50"	NA	inter
LNCA_19_P00317822	0.9144281	A	0.91407186	A	1.00024695724052	0	lncRNA	THC2564110	NA	NA	NA	NA	XLOC_006486	NA	NA	THC2564110	NA	"BROAD Institute lincRNA (XLOC_006486), lincRNA [TCONS_00013188]"	chr7:066801076-066801017	hs|7q11.21	Agilent_HUMAN_G3V2	THC2564110	THC2564110	chr7	 66801017	 66801076	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002180	2.4659436	A	3.0927742	P	0.647597535303823	0	lncRNA	TCONS_00003590	NA	NA	NA	NA	XLOC_001374	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001374), lincRNA [TCONS_00003590]"	chr2:19100610-19125136	hs|2p24.2	Agilent_HUMAN_G3V2	TCONS_00003590	TCONS_00003590	chr2	 19100610	 19125136	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14790_PI429285431	4.3754225	P	4.727616	P	0.783392108235693	0	lncRNA	16451-1_{1..205}	lnc-FAS-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAS-2:1	chr10	 90792592	 90792796	+	lnc-FAS-2	lnc-FAS-2:1	XLOC_008549	linc-IFIT2	NA	NA	NA	inter
LNCA_21_P0008575	2.1479282	A	0.901019	A	2.37332421889283	0	lncRNA	AK056534	NA	AK056534	NA	Hs.612155	LOC145757	uncharacterized LOC145757	NA	THC2501118	NA	"BROAD Institute lincRNA (XLOC_011388), lincRNA [TCONS_00023271]"	chr15:101404385-101404444	hs|15q26.3	Agilent_HUMAN_G3V2	AK056534	AK056534	chr15	101404385	101404444	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008238	0.9182497	A	0.8988462	A	1.01354033243508	0	lncRNA	TCONS_00022192	NA	NA	NA	NA	XLOC_010419	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010419), lincRNA [TCONS_00022192]"	chr13:68617773-68617832	hs|13q21.33	Agilent_HUMAN_G3V2	TCONS_00022192	TCONS_00022192	chr13	 68617773	 68617832	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12396_PI429285431	1.1279048	A	1.0392327	A	1.06339095478064	0	lncRNA	14010-1_{1..561}	lnc-KIAA1383-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KIAA1383-1:1	chr1	233001011	233001571	+	lnc-KIAA1383-1	lnc-KIAA1383-1:1	XLOC_000618	linc-C1orf57-2	NA	NA	NA	inter
CUST_43466_PI429285431	7.9944396	P	6.6288147	P	2.57687918654509	0	lncRNA	48270-1_{1..3000}	"gi|308153258|ref|NR_036662.1| Homo sapiens oxysterol binding protein-like 9 (OSBPL9), transcript variant 8, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|308153258|ref|NR_036662.1| Homo sapiens oxysterol binding protein-like 9 (OSBPL9), transcript variant 8, non-coding RNA"	Chr1	 52082546	 52085545	+	114883	NR_036662.1	NA	NA	NA	NA	NA	inter
CUST_31394_PI429285431	3.1831312	P	2.7290225	A	1.3699361940547	0	lncRNA	33171-1_{1..1105}	n337861|CR595668|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|244|NULL|-1.0380700|-0.3563700	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337861|CR595668|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|244|NULL|-1.0380700|-0.3563700	chrX	134125398	134126502	+	NA	NA	NA	NA	LOC644538	NA	chrX:134124968-134126503	inner
LNCA_21_P0001565	1.0225308	A	1.0315645	A	0.993757879801508	0	lncRNA	TCONS_00001620	NA	NA	NA	NA	XLOC_000950	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000950), lincRNA [TCONS_00001620]"	chr1:106590226-106590167	hs|1p21.1	Agilent_HUMAN_G3V2	TCONS_00001620	TCONS_00001620	chr1	106590167	106590226	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16693_PI429285431	2.1431966	A	2.3586097	A	0.861299500675536	0	lncRNA	18398-1_{1..916}	lnc-HEATR2-3:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-HEATR2-3:4	chr7	   564491	   565406	+	lnc-HEATR2-3	lnc-HEATR2-3:4	XLOC_005958	linc-HEATR2-2	PDGFA	NA	chr7:554491-559481	inter
LNCA_21_P0004155	1.2087479	A	1.8344159	A	0.648119613994592	0	lncRNA	ENST00000503489	NA	NA	NA	NA	XLOC_004927	NA	ENST00000503489	NA	NA	"BROAD Institute lincRNA (XLOC_004927), lincRNA [TCONS_00009728]"	chr5:92011799-92011740	hs|5q14.3	Agilent_HUMAN_G3V2	ENST00000503489	ENST00000503489	chr5	 92011740	 92011799	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003772	0.9990332	A	1.0412841	A	0.971138589533189	0	lncRNA	TCONS_00008581	NA	NA	NA	NA	XLOC_004091	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004091), lincRNA [TCONS_00008581]"	chr4:138569561-138533727	hs|4q28.3	Agilent_HUMAN_G3V2	TCONS_00008581	TCONS_00008581	chr4	138533727	138569561	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26279_PI429285431	1.044341	A	1.101701	A	0.961021092004724	0	lncRNA	27785-1_{1..235}	lnc-EFHC1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-EFHC1-1:1	chr6	 52262825	 52263059	+	lnc-EFHC1-1	lnc-EFHC1-1:1	ENSG00000231577.1	RP1-304B14.3	PAQR8	NA	chr6:52252825-52272575	inner
CUST_45052_PI429285431	0.9828829	A	1.3608749	A	0.769507877126324	0	lncRNA	49544-1_{1..491}	"gi|397139232|ref|XR_158832.1| PREDICTED: Homo sapiens uncharacterized LOC100996266 (LOC100996266), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|397139232|ref|XR_158832.1| PREDICTED: Homo sapiens uncharacterized LOC100996266 (LOC100996266), misc_RNA"	Chr7	116210992	116211482	-	100996266	XR_158832.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0005876	0.92050517	A	0.9293276	A	0.993903417558845	0	lncRNA	TCONS_00015112	NA	NA	NA	NA	XLOC_007169	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007169), lincRNA [TCONS_00015112]"	NA	NA	Agilent_HUMAN_G3V2	TCONS_00015112	TCONS_00015112	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007693	1.4742851	A	1.5518348	A	0.947665813853267	0	lncRNA	TCONS_00020732	NA	NA	NA	NA	XLOC_010031	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010031), lincRNA [TCONS_00020732]"	chr12:25537484-25537425	hs|12p12.1	Agilent_HUMAN_G3V2	TCONS_00020732	TCONS_00020732	chr12	 25537425	 25537484	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002880	0.91371703	A	0.91072214	A	1.00207805573082	0	lncRNA	ENST00000484106	NA	NA	NA	NA	XLOC_003260	NA	ENST00000484106	NA	NA	"BROAD Institute lincRNA (XLOC_003260), lincRNA [TCONS_00005831]"	chr3:133784268-133784209	hs|3q22.2	Agilent_HUMAN_G3V2	ENST00000484106	ENST00000484106	chr3	133784209	133784268	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013268	6.1262846	P	5.6698623	P	1.37213487571909	0	lncRNA	TCONS_l2_00026192	NA	NA	NA	NA	XLOC_l2_013594	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013594), lincRNA [TCONS_l2_00026192]"	chr7:128173739-128231917	hs|7q32.1	Agilent_HUMAN_G3V2	TCONS_l2_00026192	TCONS_l2_00026192	chr7	128173739	128231917	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011156	1.1483836	A	0.901372	A	1.18674633966077	0	lncRNA	TCONS_l2_00006985	NA	NA	NA	NA	XLOC_l2_003839	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003839), lincRNA [TCONS_l2_00006985]"	chr13:103532225-103532284	hs|13q33.1	Agilent_HUMAN_G3V2	TCONS_l2_00006985	TCONS_l2_00006985	chr13	103532225	103532284	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004347	0.91548485	A	0.9004345	A	1.01048671181775	0	lncRNA	TCONS_00010226	NA	NA	NA	NA	XLOC_004691	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004691), lincRNA [TCONS_00010226]"	chr5:26407-26348	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00010226	TCONS_00010226	chr5	    26348	    26407	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011679	4.3180237	P	4.735679	P	0.74864034304438	0	lncRNA	TCONS_l2_00012377	NA	NA	NA	NA	XLOC_l2_006640	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006640), lincRNA [TCONS_l2_00012377]"	chr19:19863532-19863591	hs|19p13.11	Agilent_HUMAN_G3V2	TCONS_l2_00012377	TCONS_l2_00012377	chr19	 19863532	 19863591	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004924	7.5876093	P	7.323435	P	1.20094851198009	0	lncRNA	TCONS_00011925	NA	NA	NA	NA	XLOC_005435	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005435), lincRNA [TCONS_00011925]"	chr6:113202017-113204278	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00011925	TCONS_00011925	chr6	113202017	113204278	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014889	1.9301847	A	2.9506583	A	0.492954501287605	0	lncRNA	ENST00000533434	XR_132807	XR_132807	NA	Hs.375101	LOC100507431	NA	ENST00000533434	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507431 (LOC100507431), miscRNA [XR_132807]"	chr11:130714929-130714870	hs|11q24.3	Agilent_HUMAN_G3V2	ENST00000533434	ENST00000533434	chr11	130714870	130714929	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011365	3.356235	P	2.6606126	A	1.61958299448116	0	lncRNA	XR_132589	XR_132589	XR_132589	NA	NA	LOC100652840	u3 small nucleolar ribonucleoprotein protein MPP10-like	NA	THC2522342	NA	"PREDICTED: Homo sapiens u3 small nucleolar ribonucleoprotein protein MPP10-like (LOC100652840), miscRNA [XR_132589]"	chr15:30785805-30785864	hs|15q13.2	Agilent_HUMAN_G3V2	XR_132589	XR_132589	chr15	 30785805	 30785864	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005562	0.93012494	A	0.9116887	A	1.01286102847569	0	lncRNA	TCONS_00014135	NA	NA	NA	NA	XLOC_006107	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006107), lincRNA [TCONS_00014135]"	chr7:56186680-56186739	hs|7p11.2	Agilent_HUMAN_G3V2	TCONS_00014135	TCONS_00014135	chr7	 56186680	 56186739	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_40644_PI429285431	1.8791424	A	0.98400664	A	1.85978488583956	0	lncRNA	41383-1_{1..1167}	n410170|NR_036652|lncRNA|Homosapiens||RefGeneNoncode|NR_036652||3.9013300|-0.2011086	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,ncbi,"	>n410170|NR_036652|lncRNA|Homosapiens||RefGeneNoncode|NR_036652||3.9013300|-0.2011086	chr15	 84748938	 84750104	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_17473_PI429285431	1.6572667	A	2.0758123	A	0.748178492920272	0	lncRNA	19199-1_{1..357}	lnc-AP001496.1-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AP001496.1-8:2	chr18	  5750779	  5751135	+	lnc-AP001496.1-8	lnc-AP001496.1-8:2	XLOC_012616	linc-ARHGAP28-4	NA	NA	NA	inter
LNCA_21_P0003925	6.5835586	P	6.36226	P	1.16578245953145	0	lncRNA	ENST00000508083	NA	BC043537	NA	Hs.434316	XLOC_004429	NA	ENST00000508083	THC2609187	NA	"BROAD Institute lincRNA (XLOC_004429), lincRNA [TCONS_00009251]"	chr5:73621675-73621734	hs|5q13.3	Agilent_HUMAN_G3V2	ENST00000508083	ENST00000508083	chr5	 73621675	 73621734	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006048	7.46383	P	7.613962	P	0.901168006086423	0	lncRNA	TCONS_00015744	NA	NA	NA	NA	XLOC_007544	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007544), lincRNA [TCONS_00015744]"	chr9:122286123-122286182	hs|9q33.1	Agilent_HUMAN_G3V2	TCONS_00015744	TCONS_00015744	chr9	122286123	122286182	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004075	0.9251785	A	0.9684863	A	0.970427406313217	0	lncRNA	ENST00000505567	NA	NA	NA	NA	XLOC_004649	NA	ENST00000505567	NA	NA	"BROAD Institute lincRNA (XLOC_004649), lincRNA [TCONS_00009544]"	chr5:174048608-174052773	hs|5q35.2	Agilent_HUMAN_G3V2	ENST00000505567	ENST00000505567	chr5	174048608	174052773	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007023	0.9168942	A	0.92066157	A	0.997392064693717	0	lncRNA	TCONS_00018617	NA	NA	NA	NA	XLOC_008964	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008964), lincRNA [TCONS_00018617]"	chr10:119587953-119587894	hs|10q26.11	Agilent_HUMAN_G3V2	TCONS_00018617	TCONS_00018617	chr10	119587894	119587953	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009641	0.91447026	A	0.9136084	A	1.00059757430546	0	lncRNA	TCONS_00026743	NA	NA	NA	NA	XLOC_012900	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012900), lincRNA [TCONS_00026743]"	chr18:76736654-76736595	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026743	TCONS_00026743	chr18	 76736595	 76736654	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8573_PI429285431	7.3922224	P	7.313983	P	1.05572889015912	0	lncRNA	10131-1_{1..981}	lnc-BHLHE41-2:11	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-BHLHE41-2:11	chr12	 26110386	 26111366	-	lnc-BHLHE41-2	lnc-BHLHE41-2:11	ENSG00000246695	ENST00000500102	NA	NA	NA	inter
LNCA_19_P00809368	5.6583595	P	5.376372	P	1.21586874843752	0	lncRNA	THC2631297	NA	NA	NA	NA	XLOC_002749	NA	NA	THC2631297	NA	"BROAD Institute lincRNA (XLOC_002749), lincRNA [TCONS_00006148]"	chr3:107856895-107856954	hs|3q13.12	Agilent_HUMAN_G3V2	THC2631297	THC2631297	chr3	107856895	107856954	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002012	0.9139917	A	2.133215	A	0.429513892268953	0	lncRNA	ENST00000418358	NA	NA	NA	NA	XLOC_001975	NA	ENST00000418358	NA	NA	"BROAD Institute lincRNA (XLOC_001975), lincRNA [TCONS_00003197]"	chr2:8683992-8683933	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000418358	ENST00000418358	chr2	  8683933	  8683992	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005203	4.0187154	P	4.3475165	P	0.796197860602257	0	lncRNA	XR_108720	XR_108720	XR_108720	NA	Hs.557780	LOC100507642	uncharacterized LOC100507642	NA	THC2606896	NA	"PREDICTED: Homo sapiens hypothetical LOC100507642 (LOC100507642), miscRNA [XR_108720]"	chr7:153698-153757	hs|7p22.3	Agilent_HUMAN_G3V2	XR_108720	XR_108720	chr7	   153698	   153757	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_8571_PI429285431	3.7688067	P	3.45544	P	1.24260408311441	0	lncRNA	10129-2_{3001..5904}	lnc-ZNF71-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-ZNF71-2:1	chr19	 57327085	 57329988	+	lnc-ZNF71-2	lnc-ZNF71-2:1	ENSG00000248561	ENST00000513382	ZIM2	"hg19_refFlat_PEG3:range=chr19:57325043-573356455'pad=0,hg19_refFlat_PEG3:range=chr19:57325043-573356455'pad=0 3'pad=0 strand=- repeatMasking=none,-95.30;hg19_refFlat_PEG3:range=chr19:57325043-573360235'pad=0,hg19_refFlat_PEG3:range=chr19:57325043-573360235'pad=0 3'pad=0 strand=- repeatMasking=none,-95.30chr19:57314085-57337470"	NA	inner
CUST_51649_PI429285431	12.17665	P	12.702163	P	0.694712037161252	0	lncRNA	55219-1_{1..3000}	hg19_lincRNAsTranscripts_TCONS_l2_00011390 range=chr17:60214314-60218096 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"NONCODERv3,UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00011390 range=chr17:60214314-60218096 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr17	 60214314	 60217313	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005633	0.9813842	A	1.0317806	A	0.965670961295747	0	lncRNA	TCONS_00014543	NA	NA	NA	NA	XLOC_006898	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006898), lincRNA [TCONS_00014543]"	chr8:104258490-104258549	hs|8q22.3	Agilent_HUMAN_G3V2	TCONS_00014543	TCONS_00014543	chr8	104258490	104258549	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014255	0.9625757	A	1.0209846	A	0.960322643164904	0	lncRNA	XR_109028	XR_109028	XR_109028	NA	NA	LOC100506006	uncharacterized LOC100506006	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506006 (LOC100506006), miscRNA [XR_109028]"	chr10:131589032-131589091	hs|10q26.3	Agilent_HUMAN_G3V2	XR_109028	XR_109028	chr10	131589032	131589091	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002576	4.6236324	P	4.6952734	P	0.951555031673257	0	lncRNA	AL117577	NA	AL117577	NA	Hs.274526	XLOC_001377	NA	ENST00000450628	THC2614443	NA	"BROAD Institute lincRNA (XLOC_001377), lincRNA [TCONS_00004705]"	chr2:19688297-19688356	hs|2p24.1	Agilent_HUMAN_G3V2	AL117577	AL117577	chr2	 19688297	 19688356	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_45330_PI429285431	0.93474585	A	0.99776345	A	0.957259780138314	0	lncRNA	49770-1_{1..2867}	"gi|149274631|ref|NR_003581.1| Homo sapiens ATPase, class I, type 8B, member 5, pseudogene (ATP8B5P), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|149274631|ref|NR_003581.1| Homo sapiens ATPase, class I, type 8B, member 5, pseudogene (ATP8B5P), transcript variant 1, non-coding RNA"	NA	NA	NA	NA	NA	NR_003581.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013656	5.345255	P	4.618306	P	1.65513512125784	0	lncRNA	TCONS_l2_00029360	NA	NA	NA	NA	XLOC_l2_015213	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015213), lincRNA [TCONS_l2_00029360]"	chr9:68433595-68433536	hs|9q13	Agilent_HUMAN_G3V2	TCONS_l2_00029360	TCONS_l2_00029360	chr9	 68433536	 68433595	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41975_PI429285431	0.96984553	A	0.95567834	A	1.0098683217058	0	lncRNA	43791-1_{1..81}	ENST00000362117 ncrna:miRNA chromosome:GRCh37:3:160122533:160122613:1 gene:ENSG00000198987 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000362117 ncrna:miRNA chromosome:GRCh37:3:160122533:160122613:1 gene:ENSG00000198987 gene_biotype:miRNA transcript_biotype:miRNA	chr3	160122533	160122613	+	ENSG00000198987	ENST00000362117	NA	NA	IFT80	NA	chr3:160112533-160117320	inner
LNCA_21_P0001353	0.9448526	A	0.90657115	A	1.02688985829648	0	lncRNA	TCONS_00001078	NA	NA	NA	NA	XLOC_000318	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000318), lincRNA [TCONS_00001078]"	chr1:101630217-101630276	hs|1p21.2	Agilent_HUMAN_G3V2	TCONS_00001078	TCONS_00001078	chr1	101630217	101630276	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25579_PI429285431	2.235146	A	2.634161	A	0.758375887654605	0	lncRNA	27109-1_{1..162}	lnc-MCU-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MCU-1:1	chr10	 74262594	 74262755	+	lnc-MCU-1	lnc-MCU-1:1	ENSG00000226163.1	RP11-167P22.3	MICU1	NA	chr10:74252594-74272714	inner
CUST_30700_PI429285431	5.6551013	P	5.702963	P	0.967369059348736	0	lncRNA	32482-1_{1..345}	n336201|X93716|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324666|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324666|2.5535000|-0.0787140	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336201|X93716|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000324666|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000324666|2.5535000|-0.0787140	chr2	 89160396	 89160740	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005641	7.067064	P	7.1550603	P	0.940828520401448	0	lncRNA	TCONS_00014572	NA	NA	NA	NA	XLOC_006683	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006683), lincRNA [TCONS_00014572]"	chr8:1212532-1212591	hs|8p23.3	Agilent_HUMAN_G3V2	TCONS_00014572	TCONS_00014572	chr8	  1212532	  1212591	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003162	8.775784	P	9.038729	P	0.833384977768239	0	lncRNA	TCONS_00006620	NA	NA	NA	NA	XLOC_003226	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003226), lincRNA [TCONS_00006620]"	chr3:120530437-120530378	hs|3q13.33	Agilent_HUMAN_G3V2	TCONS_00006620	TCONS_00006620	chr3	120530378	120530437	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010525	15.110931	P	15.062201	P	1.0343539843257	0	lncRNA	TCONS_l2_00000181	NA	NA	NA	NA	XLOC_l2_000123	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000123), lincRNA [TCONS_l2_00000181]"	chr1:27976175-27976234	hs|1p36.11	Agilent_HUMAN_G3V2	TCONS_l2_00000181	TCONS_l2_00000181	chr1	 27976175	 27976234	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47686_PI429285431	2.0507545	A	1.0706862	A	1.97255879156072	0	lncRNA	51663-1_{1..3000}	"gi|385137095|ref|NR_047634.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 64, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|385137095|ref|NR_047634.1| Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 64, non-coding RNA"	ChrY	 15360259	 15363258	-	7404	NR_047634.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0013031	0.91640556	A	0.91906214	A	0.998160293401628	0	lncRNA	TCONS_l2_00024354	NA	NA	NA	NA	XLOC_l2_012661	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012661), lincRNA [TCONS_l2_00024354]"	chr6:100555459-100555518	hs|6q16.2	Agilent_HUMAN_G3V2	TCONS_l2_00024354	TCONS_l2_00024354	chr6	100555459	100555518	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012270	4.895846	P	5.228541	P	0.79405178358845	0	lncRNA	TCONS_l2_00017775	NA	NA	NA	NA	XLOC_l2_009395	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009395), lincRNA [TCONS_l2_00017775]"	chr22:41470133-41470192	hs|22q13.2	Agilent_HUMAN_G3V2	TCONS_l2_00017775	TCONS_l2_00017775	chr22	 41470133	 41470192	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003498	0.9211294	A	0.8995837	A	1.01504641570641	0	lncRNA	ENST00000507299	NA	NA	NA	NA	XLOC_004062	NA	ENST00000507299	NA	NA	"BROAD Institute lincRNA (XLOC_004062), lincRNA [TCONS_00007819]"	chr4:125109361-125109302	hs|4q28.1	Agilent_HUMAN_G3V2	ENST00000507299	ENST00000507299	chr4	125109302	125109361	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00322569	8.794283	P	8.871826	P	0.947670214905129	0	lncRNA	XR_109875	XR_109875	XR_109875	NA	Hs.699065	LOC727721	uncharacterized LOC727721	ENST00000437157	THC2652642	NA	"PREDICTED: Homo sapiens hypothetical LOC727721 (LOC727721), miscRNA [XR_109875]"	chr1:9242124-9242065	hs|1p36.22	Agilent_HUMAN_G3V2	XR_109875	XR_109875	chr1	  9242065	  9242124	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25983_PI429285431	3.542544	P	3.6055195	P	0.957287714818634	0	lncRNA	27503-1_{1..387}	lnc-IL17B-3:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-IL17B-3:2	chr5	148656253	148656639	-	lnc-IL17B-3	lnc-IL17B-3:2	ENSG00000248647.2	RP11-331K21.1	AFAP1L1	NA	chr5:148651401-148666339	inner
LNCA_21_P0014073	3.970725	P	4.115323	P	0.904631413616088	0	lncRNA	ENST00000455503	XR_108349	XR_108349	NA	Hs.634042	LOC100505481	NA	ENST00000455503	THC2684689	NA	"PREDICTED: Homo sapiens hypothetical LOC100505481 (LOC100505481), miscRNA [XR_108349]"	chr1:151320308-151320367	hs|1q21.3	Agilent_HUMAN_G3V2	ENST00000455503	ENST00000455503	chr1	151320308	151320367	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005817	1.5062706	A	2.2676344	A	0.589938389948862	0	lncRNA	ENST00000523946	XR_133480	XR_133480	NA	Hs.532031	XLOC_007052	NA	ENST00000523946	THC2500167	NA	"PREDICTED: Homo sapiens hypothetical LOC100507403 (LOC100507403), miscRNA [XR_133480]"	chr8:37184796-37184737	hs|8p11.23	Agilent_HUMAN_G3V2	ENST00000523946	ENST00000523946	chr8	 37184737	 37184796	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006664	1.2006624	A	2.566025	A	0.38813687279431	0	lncRNA	ENST00000426067	NA	NA	NA	NA	XLOC_008436	NA	ENST00000426067	NA	NA	"BROAD Institute lincRNA (XLOC_008436), lincRNA [TCONS_00017805]"	chr10:30869052-30869111	hs|10p11.23	Agilent_HUMAN_G3V2	ENST00000426067	ENST00000426067	chr10	 30869052	 30869111	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004313	7.213005	P	7.3667326	P	0.898924839546698	0	lncRNA	TCONS_00010139	NA	NA	NA	NA	XLOC_004600	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004600), lincRNA [TCONS_00010139]"	chr5:149100572-149100631	hs|5q32	Agilent_HUMAN_G3V2	TCONS_00010139	TCONS_00010139	chr5	149100572	149100631	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12113_PI429285431	8.7521	P	9.003068	P	0.840332391195454	0	lncRNA	13710-1_{1..417}	lnc-COX19-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-COX19-1:1	chr7	  1019900	  1020316	-	lnc-COX19-1	lnc-COX19-1:1	XLOC_006331	linc-COX19	CYP2W1	NA	chr7:1022835-1029276	inter
LNCA_21_P0008408	0.92631066	A	0.97675955	A	0.965635827642942	0	lncRNA	TCONS_00022677	NA	NA	NA	NA	XLOC_010972	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010972), lincRNA [TCONS_00022677]"	chr14:24345251-24345192	hs|14q11.2	Agilent_HUMAN_G3V2	TCONS_00022677	TCONS_00022677	chr14	 24345192	 24345251	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009892	0.9204422	A	0.92897516	A	0.99410285963039	0	lncRNA	ENST00000450971	NA	NA	NA	NA	XLOC_013695	NA	ENST00000450971	THC2661442	NA	"BROAD Institute lincRNA (XLOC_013695), lincRNA [TCONS_00028025]"	chr20:23635924-23635865	hs|20p11.21	Agilent_HUMAN_G3V2	ENST00000450971	ENST00000450971	chr20	 23635865	 23635924	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009107	0.9182742	A	0.92370456	A	0.996243036390545	0	lncRNA	TCONS_00024861	NA	NA	NA	NA	XLOC_011753	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011753), lincRNA [TCONS_00024861]"	chr16:65172597-65172656	hs|16q21	Agilent_HUMAN_G3V2	TCONS_00024861	TCONS_00024861	chr16	 65172597	 65172656	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014696	4.253003	P	3.9328988	P	1.2484207140003	0	lncRNA	XR_111772	XR_111772	XR_111772	NA	NA	LOC100509075	uncharacterized LOC100509075	NA	THC2640149	NA	"PREDICTED: Homo sapiens hypothetical LOC100509075, transcript variant 2 (LOC100509075), miscRNA [XR_111772]"	chr18:44526202-44526261	hs|18q21.1	Agilent_HUMAN_G3V2	XR_111772	XR_111772	chr18	 44526202	 44526261	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001966	2.0153248	A	1.142873	A	1.83077157805225	0	lncRNA	TCONS_00003103	NA	NA	NA	NA	XLOC_001850	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001850), lincRNA [TCONS_00003103]"	chr2:216444153-216444212	hs|2q35	Agilent_HUMAN_G3V2	TCONS_00003103	TCONS_00003103	chr2	216444153	216444212	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004009	0.91688544	A	0.90072113	A	1.01126724854449	0	lncRNA	ENST00000513197	NA	NA	NA	NA	XLOC_004417	NA	ENST00000513197	NA	NA	"BROAD Institute lincRNA (XLOC_004417), lincRNA [TCONS_00009414]"	chr5:68259246-68259305	hs|5q13.1	Agilent_HUMAN_G3V2	ENST00000513197	ENST00000513197	chr5	 68259246	 68259305	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44_PI429201921	6.600337	P	6.801197	P	0.870031777022545	0	lncRNA	45-1_{1..1428}	TC02003410.hg.1	TCONS_l2_00013794-XLOC_l2_007428 // Broad TUCP // linc-TEKT4-3 chr2:+:92150357-92151786 // chr2 // 100 // 100 // 0 // --- // 0	NA	NA	NA	NA	NA	NA	NA	NA	chr2:+:92150357-92151786	NA	Affy_HUMAN_HTA2.0	TCONS_l2_00013794-XLOC_l2_007428	linc-TEKT4-3	chr2	 92150357	 92151786	+	NA	NA	NA	NA	LOC338667	NA	chr11:125817319-125823597	Unknown
LNCA_21_P0001500	0.9284245	A	0.9026711	A	1.01801117614534	0	lncRNA	TCONS_00001489	NA	NA	NA	NA	XLOC_000828	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000828), lincRNA [TCONS_00001489]"	chr1:48727081-48727022	hs|1p33	Agilent_HUMAN_G3V2	TCONS_00001489	TCONS_00001489	chr1	 48727022	 48727081	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005805	2.922985	A	2.6171243	A	1.23615589762852	0	lncRNA	TCONS_00014943	NA	NA	NA	NA	XLOC_007017	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007017), lincRNA [TCONS_00014943]"	chr8:19782668-19782609	hs|8p21.3	Agilent_HUMAN_G3V2	TCONS_00014943	TCONS_00014943	chr8	 19782609	 19782668	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42330_PI429285431	1.3439156	A	1.868309	A	0.695251376008055	0	lncRNA	44981-1_{1..124}	ENST00000384295 ncrna:snoRNA chromosome:GRCh37:1:93311616:93311739:1 gene:ENSG00000207022 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000384295 ncrna:snoRNA chromosome:GRCh37:1:93311616:93311739:1 gene:ENSG00000207022 gene_biotype:snoRNA transcript_biotype:snoRNA	chr1	 93311616	 93311739	+	ENSG00000207022	ENST00000384295	NA	NA	FAM69A	NA	chr1:93307721-93321739	inner
CUST_26280_PI429285431	5.732384	P	5.754283	P	0.984935393706282	0	lncRNA	27786-1_{1..575}	lnc-C1QTNF8-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-C1QTNF8-1:4	chr16	  1123566	  1124140	-	lnc-C1QTNF8-1	lnc-C1QTNF8-1:4	ENSG00000261713.1	RP11-161M6.4	SSTR5	NA	chr16:1122756-1131454	inner
LNCA_21_P0013650	3.4653854	P	4.3206077	P	0.552780144074525	0	lncRNA	TCONS_l2_00029343	NA	NA	NA	NA	XLOC_l2_015212	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015212), lincRNA [TCONS_l2_00029343]"	chr9:68412115-68412056	hs|9q13	Agilent_HUMAN_G3V2	TCONS_l2_00029343	TCONS_l2_00029343	chr9	 68412056	 68412115	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00321734	7.425385	P	7.3568425	P	1.04865673023587	0	lncRNA	ENST00000474477	NA	NA	NA	NA	XLOC_002892	NA	ENST00000474477	THC2629705	NA	"BROAD Institute lincRNA (XLOC_002892), lincRNA [TCONS_00005635]"	chr3:156817800-156817859	hs|3q25.31	Agilent_HUMAN_G3V2	ENST00000474477	ENST00000474477	chr3	156817800	156817859	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004542	3.2674906	P	3.8417318	P	0.671639414027608	0	lncRNA	TCONS_00010842	NA	NA	NA	NA	XLOC_004653	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004653), lincRNA [TCONS_00010842]"	chr5:175413791-175413850	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_00010842	TCONS_00010842	chr5	175413791	175413850	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21326_PI429285431	0.924014	A	0.9031151	A	1.01459144438236	0	lncRNA	22949-1_{1..675}	lnc-AP1S2-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-AP1S2-1:1	chrX	 15802287	 15802961	-	lnc-AP1S2-1	lnc-AP1S2-1:1	ENSG00000240178.1	CA5B-AS1	CA5B	NA	chrX:15792287-15805748	inner
LNCA_32_P499005	1.174442	A	0.9019305	A	1.20790877333094	0	lncRNA	XR_109751	XR_109751	XR_109751	   388882	Hs.542766	LOC388882	uncharacterized LOC388882	NA	THC2488554	NA	"PREDICTED: Homo sapiens hypothetical LOC388882 (LOC388882), miscRNA [XR_109751]"	chr22:23813243-23813184	hs|22q11.23	Agilent_HUMAN_G3V2	XR_109751	XR_109751	chr22	 23813184	 23813243	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010460	3.8819141	P	3.955143	P	0.950508280300798	0	lncRNA	XR_109694	XR_109694	XR_109694	NA	Hs.731196	C22orf37	chromosome 22 open reading frame 37	NA	THC2475130	NA	"PREDICTED: Homo sapiens chromosome 22 open reading frame 37 (C22orf37), miscRNA [XR_109694]"	chr22:18261071-18261130	hs|22q11.21	Agilent_HUMAN_G3V2	XR_109694	XR_109694	chr22	 18261071	 18261130	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014358	7.8097057	P	7.6339145	P	1.12958371906874	0	lncRNA	XR_109439	XR_109439	XR_109439	NA	NA	LOC100507520	uncharacterized LOC100507520	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507520, transcript variant 1 (LOC100507520), miscRNA [XR_109439]"	chr17:79361987-79361928	hs|17q25.3	Agilent_HUMAN_G3V2	XR_109439	XR_109439	chr17	 79361928	 79361987	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002597	0.95831776	A	0.9095218	A	1.03440127605856	0	lncRNA	TCONS_00004806	NA	NA	NA	NA	XLOC_001504	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001504), lincRNA [TCONS_00004806]"	chr2:65981908-66015822	hs|2p14	Agilent_HUMAN_G3V2	TCONS_00004806	TCONS_00004806	chr2	 65981908	 66015822	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008714	1.078413	A	1.1541028	A	0.948888317723038	0	lncRNA	TCONS_00023595	NA	NA	NA	NA	XLOC_011407	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011407), lincRNA [TCONS_00023595]"	chr15:26703406-26703347	hs|15q12	Agilent_HUMAN_G3V2	TCONS_00023595	TCONS_00023595	chr15	 26703347	 26703406	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001609	1.9551704	A	0.9116946	A	2.06118757364103	0	lncRNA	TCONS_00001771	NA	NA	NA	NA	XLOC_001153	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001153), lincRNA [TCONS_00001771]"	chr1:201425040-201424981	hs|1q32.1	Agilent_HUMAN_G3V2	TCONS_00001771	TCONS_00001771	chr1	201424981	201425040	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22273_PI429285431	3.1003923	A	3.1943524	A	0.936947359266674	0	lncRNA	23874-1_{1..347}	lnc-CCDC117-1:4	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCDC117-1:4	chr22	 29217960	 29218306	+	lnc-CCDC117-1	lnc-CCDC117-1:4	ENSG00000226471.2	CTA-292E10.6	NA	NA	NA	inter
LNCA_21_P0007234	1.5099919	A	0.9957809	A	1.42821284633121	0	lncRNA	TCONS_00019382	NA	NA	NA	NA	XLOC_009206	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009206), lincRNA [TCONS_00019382]"	chr11:72859646-72892257	hs|11q13.4	Agilent_HUMAN_G3V2	TCONS_00019382	TCONS_00019382	chr11	 72859646	 72892257	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012617	0.91810954	A	0.92304343	A	0.996585929295418	0	lncRNA	ENST00000502757	NA	NA	NA	NA	XLOC_l2_010855	NA	ENST00000502757	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010855), lincRNA [TCONS_l2_00020785]"	chr4:139234466-139234525	hs|4q28.3	Agilent_HUMAN_G3V2	ENST00000502757	ENST00000502757	chr4	139234466	139234525	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006112	0.9144754	A	0.9110778	A	1.00235781213818	0	lncRNA	ENST00000417135	NA	NA	NA	NA	XLOC_007884	NA	ENST00000417135	NA	NA	"BROAD Institute lincRNA (XLOC_007884), lincRNA [TCONS_00015890]"	chr9:137185836-137185777	hs|9q34.2	Agilent_HUMAN_G3V2	ENST00000417135	ENST00000417135	chr9	137185777	137185836	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00319829	7.233385	P	7.4294257	P	0.872942964113644	0	lncRNA	ENST00000453454	NA	NA	NA	NA	XLOC_l2_010511	NA	ENST00000453454	THC2754497	NA	"BROAD Institute lincRNA (XLOC_l2_010511), lincRNA [TCONS_l2_00020324]"	chr3:197305532-197305473	hs|3q29	Agilent_HUMAN_G3V2	ENST00000453454	ENST00000453454	chr3	197305473	197305532	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006032	4.129971	P	4.5146737	P	0.765936820920808	0	lncRNA	TCONS_00015719	NA	NA	NA	NA	XLOC_007466	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007466), lincRNA [TCONS_00015719]"	chr9:96721270-96721329	hs|9q22.32	Agilent_HUMAN_G3V2	TCONS_00015719	TCONS_00015719	chr9	 96721270	 96721329	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_1425_PI429285431	1.3903818	A	1.3075567	A	1.05908993190128	0	lncRNA	1414-1_{1..670}	"transcript_id ""ENST00000601930.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601930.1"" | genecode_v17"	chr3	107574011	107574680	-	ENSG00000241469.2	ENST00000601930.1	LINC00635	LINC00635-013	NA	NA	NA	inter
LNCA_21_P0001382	0.91987324	A	0.90020126	A	1.01372896594537	0	lncRNA	TCONS_00001187	NA	NA	NA	NA	XLOC_000451	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000451), lincRNA [TCONS_00001187]"	chr1:166308564-166308623	hs|1q24.1	Agilent_HUMAN_G3V2	TCONS_00001187	TCONS_00001187	chr1	166308564	166308623	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002007	5.3533964	P	5.217492	P	1.098781404557	0	lncRNA	ENST00000414654	NA	NA	NA	NA	XLOC_001970	NA	ENST00000414654	THC2649787	NA	"BROAD Institute lincRNA (XLOC_001970), lincRNA [TCONS_00003190]"	chr2:7811795-7811736	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000414654	ENST00000414654	chr2	  7811736	  7811795	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009012	2.3349237	A	2.936155	A	0.65919111399609	0	lncRNA	TCONS_00024588	NA	NA	NA	NA	XLOC_011880	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011880), lincRNA [TCONS_00024588]"	chr16:14107248-14105229	hs|16p13.12	Agilent_HUMAN_G3V2	TCONS_00024588	TCONS_00024588	chr16	 14105229	 14107248	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014059	7.3335066	P	7.7287807	P	0.760344903719728	0	lncRNA	ENST00000489002	XR_108306	XR_108306	NA	NA	PIGC	"phosphatidylinositol glycan anchor biosynthesis, class C"	ENST00000489002	THC2678538	GO:0006501|GO:0005783|GO:0016757|GO:0016254|GO:0003824|GO:0000506|GO:0017176|GO:0016020|GO:0005789|GO:0016021|GO:0044267|GO:0006506|GO:0043687	"PREDICTED: Homo sapiens hypothetical LOC100505991, transcript variant 1 (LOC100505991), miscRNA [XR_108306]"	chr1:172345756-172345697	hs|1q24.3	Agilent_HUMAN_G3V2	ENST00000489002	ENST00000489002	chr1	172345697	172345756	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005626	1.0243216	A	1.040939	A	0.988547777745074	0	lncRNA	ENST00000521221	NA	AK093370	NA	Hs.197597	XLOC_007100	NA	ENST00000521221	THC2621599	NA	"BROAD Institute lincRNA (XLOC_007100), lincRNA [TCONS_00014519]"	chr8:64297456-64297397	hs|8q12.3	Agilent_HUMAN_G3V2	ENST00000521221	ENST00000521221	chr8	 64297397	 64297456	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010424	1.8703527	A	1.7152275	A	1.11351824740641	0	lncRNA	TCONS_00029621	NA	NA	NA	NA	XLOC_014276	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014276), lincRNA [TCONS_00029621]"	chr22:48411335-48411394	hs|22q13.32	Agilent_HUMAN_G3V2	TCONS_00029621	TCONS_00029621	chr22	 48411335	 48411394	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012056	0.9883097	A	1.0374432	A	0.966516656164416	0	lncRNA	ENST00000436187	NA	NA	NA	NA	XLOC_l2_007884	NA	ENST00000436187	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007884), lincRNA [TCONS_l2_00015705]"	chr2:8710552-8710493	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000436187	ENST00000436187	chr2	  8710493	  8710552	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013588	2.227964	A	1.479431	A	1.68008357383141	0	lncRNA	ENST00000481510	NA	NA	NA	NA	C2orf27A	chromosome 2 open reading frame 27A	ENST00000481510	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014836), lincRNA [TCONS_l2_00028818]"	chr2:132515714-132515773	hs|2q21.2	Agilent_HUMAN_G3V2	ENST00000481510	ENST00000481510	chr2	132515714	132515773	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_49196_PI429285431	4.530232	P	4.593007	P	0.95742076409049	0	lncRNA	53019-1_{1..2130}	hg19_lincRNAsTranscripts_TCONS_l2_00020823 range=chr4:154561438-154601686 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00020823 range=chr4:154561438-154601686 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr4	154561438	154563567	+	NA	NA	NA	NA	KIAA0922	NA	chr4:154551438-154557863	inter
LNCA_21_P0006273	3.9988155	P	4.5424123	P	0.686058354996603	0	lncRNA	TCONS_00016343	NA	NA	NA	NA	XLOC_007724	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007724), lincRNA [TCONS_00016343]"	chr9:71911691-71911632	hs|9q21.11	Agilent_HUMAN_G3V2	TCONS_00016343	TCONS_00016343	chr9	 71911632	 71911691	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008325	4.4607525	P	4.225937	P	1.17675623735362	0	lncRNA	TCONS_00022479	NA	NA	NA	NA	XLOC_010808	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010808), lincRNA [TCONS_00022479]"	chr14:38397137-38397196	hs|14q21.1	Agilent_HUMAN_G3V2	TCONS_00022479	TCONS_00022479	chr14	 38397137	 38397196	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014423	4.9169545	P	2.4605918	A	5.48831276736515	0	lncRNA	XR_109706	XR_109706	XR_109706	NA	NA	LOC100506075	uncharacterized LOC100506075	NA	THC2667604	NA	"PREDICTED: Homo sapiens hypothetical LOC100506075 (LOC100506075), miscRNA [XR_109706]"	chr22:31051566-31051507	hs|22q12.2	Agilent_HUMAN_G3V2	XR_109706	XR_109706	chr22	 31051507	 31051566	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34296_PI429285431	2.2293425	A	2.2960868	A	0.954790223999901	0	lncRNA	35794-1_{1..1884}	n341156|BX647543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3622|NULL|-1.0080100|-0.2280486	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n341156|BX647543|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3622|NULL|-1.0080100|-0.2280486	chr11	128789205	128791088	+	NA	NA	NA	NA	KCNJ5	NA	chr11:128779205-128787964	inter
LNCA_21_P0008494	0.9202535	A	1.8893876	A	0.510812558593409	0	lncRNA	TCONS_00022884	NA	NA	NA	NA	XLOC_011138	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011138), lincRNA [TCONS_00022884]"	chr14:102414723-102414664	hs|14q32.31	Agilent_HUMAN_G3V2	TCONS_00022884	TCONS_00022884	chr14	102414664	102414723	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17260_PI429285431	0.9298199	A	1.1180485	A	0.877682714740545	0	lncRNA	18978-1_{1..245}	lnc-USP35-10:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-USP35-10:1	chr11	 80007828	 80008072	+	lnc-USP35-10	lnc-USP35-10:1	XLOC_009229	linc-C11orf82-4	NA	NA	NA	inter
CUST_33833_PI429285431	1.6682221	A	1.5643778	A	1.07463318894209	0	lncRNA	35381-1_{1..1109}	n340620|BC062794|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3082|NULL|-0.8535460|-0.2980934	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n340620|BC062794|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3082|NULL|-0.8535460|-0.2980934	chr17	 32496394	 32497502	-	NA	NA	NA	NA	NA	NA	NA	inter
CUST_30299_PI429285431	5.3077326	P	4.6075606	P	1.62469847985576	0	lncRNA	32075-1_{1..215}	n335200|AY486334|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254899|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254899|0.6623340|-0.3241337	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335200|AY486334|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000254899|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000254899|0.6623340|-0.3241337	chr5	159842131	159842345	-	NA	NA	NA	NA	SLU7	NA	chr5:159832131-159846168	inner
CUST_15949_PI429285431	0.96055496	A	1.0116199	A	0.965223576306375	0	lncRNA	17646-1_{1..421}	lnc-PDLIM1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-PDLIM1-2:1	chr10	 96928138	 96928558	-	lnc-PDLIM1-2	lnc-PDLIM1-2:1	XLOC_008910	linc-CYP2C8	NA	NA	NA	inter
LNCA_19_P00323103	5.031611	P	5.058653	P	0.981430491854895	0	lncRNA	ENST00000485597	NA	NA	NA	NA	XLOC_001775	NA	ENST00000485597	NA	GO:0070534|GO:0005737|GO:0004842|GO:0070979|GO:0016881|GO:0000166|GO:0016874|GO:0005730|GO:0005634|GO:0070936|GO:0005524|GO:0040008	"BROAD Institute lincRNA (XLOC_001775), lincRNA [TCONS_00004960]"	chr2:181941111-181941170	hs|2q31.3	Agilent_HUMAN_G3V2	ENST00000485597	ENST00000485597	chr2	181941111	181941170	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008491	1.0668645	A	0.9160193	A	1.11021970156983	0	lncRNA	ENST00000555860	NA	NA	NA	NA	XLOC_011135	NA	ENST00000555860	NA	NA	"BROAD Institute lincRNA (XLOC_011135), lincRNA [TCONS_00022881]"	chr14:101872414-101872355	hs|14q32.31	Agilent_HUMAN_G3V2	ENST00000555860	ENST00000555860	chr14	101872355	101872414	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_26092_PI429285431	0.93940884	A	1.0715649	A	0.912466779347337	0	lncRNA	27605-1_{1..448}	lnc-HMBOX1-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-HMBOX1-3:1	chr8	 28810029	 28810476	+	lnc-HMBOX1-3	lnc-HMBOX1-3:1	ENSG00000259412.1	AC108449.3	HMBOX1	NA	chr8:28800029-28820397	inner
LNCA_21_P0014337	0.916476	A	0.9025166	A	1.00972288180216	0	lncRNA	XR_109338	XR_109338	XR_109338	NA	Hs.694616	LOC100289580	uncharacterized LOC100289580	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100289580 (LOC100289580), miscRNA [XR_109338]"	chr16:88805420-88805479	hs|16q24.3	Agilent_HUMAN_G3V2	XR_109338	XR_109338	chr16	 88805420	 88805479	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004678	5.126469	P	5.2469344	P	0.919890854522928	0	lncRNA	ENST00000458693	NA	NA	NA	NA	XLOC_005423	NA	ENST00000458693	NA	NA	"BROAD Institute lincRNA (XLOC_005423), lincRNA [TCONS_00011354]"	chr6:110149915-110149974	hs|6q21	Agilent_HUMAN_G3V2	ENST00000458693	ENST00000458693	chr6	110149915	110149974	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_20901_PI429285431	0.92144334	A	0.90369546	A	1.01237787251275	0	lncRNA	22532-1_{1..373}	lnc-SDCCAG8-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-SDCCAG8-2:1	chr1	243332528	243332900	+	lnc-SDCCAG8-2	lnc-SDCCAG8-2:1	ENSG00000232085.1	RP11-261C10.4	CEP170	NA	chr1:243322528-243342747	inner
LNCA_21_P0004481	0.921103	A	0.9005225	A	1.01436755072393	0	lncRNA	TCONS_00010594	NA	NA	NA	NA	XLOC_004244	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004244), lincRNA [TCONS_00010594]"	chr5:1043596-1043655	hs|5p15.33	Agilent_HUMAN_G3V2	TCONS_00010594	TCONS_00010594	chr5	  1043596	  1043655	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003639	1.0716026	A	0.90298223	A	1.12398312054551	0	lncRNA	TCONS_00008202	NA	NA	NA	NA	XLOC_003656	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003656), lincRNA [TCONS_00008202]"	chr4:116191285-116191344	hs|4q26	Agilent_HUMAN_G3V2	TCONS_00008202	TCONS_00008202	chr4	116191285	116191344	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003319	6.512021	P	7.1544127	P	0.640649998306404	0	lncRNA	ENST00000515329	XR_109847	XR_109847	NA	Hs.585167	XLOC_003737	NA	ENST00000515329	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100505685 (LOC100505685), miscRNA [XR_109847]"	chr4:152890449-152890508	hs|4q31.3	Agilent_HUMAN_G3V2	ENST00000515329	ENST00000515329	chr4	152890449	152890508	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22235_PI429285431	6.2891574	P	6.48599	P	0.872463934364104	0	lncRNA	23835-1_{1..457}	lnc-NFIB-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-NFIB-1:1	chr9	 13279029	 13279485	-	lnc-NFIB-1	lnc-NFIB-1:1	ENSG00000234740.1	RP11-272P10.2	NA	NA	NA	inner
LNCA_21_P0013260	2.5235014	A	3.1243987	A	0.65934374176127	0	lncRNA	TCONS_l2_00026147	NA	NA	NA	NA	XLOC_l2_013547	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013547), lincRNA [TCONS_l2_00026147]"	chr7:105955156-105955215	hs|7q22.3	Agilent_HUMAN_G3V2	TCONS_l2_00026147	TCONS_l2_00026147	chr7	105955156	105955215	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004531	4.6169133	P	4.4907274	P	1.0914045020795	0	lncRNA	THC2506711	NA	NA	NA	NA	XLOC_004577	NA	NA	THC2506711	NA	"BROAD Institute lincRNA (XLOC_004577), lincRNA [TCONS_00010805]"	chr5:139552382-139552441	hs|5q31.3	Agilent_HUMAN_G3V2	THC2506711	THC2506711	chr5	139552382	139552441	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_36965_PI429285431	0.9276891	A	0.9707938	A	0.970564030945964	0	lncRNA	38111-1_{1..354}	n345427|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_976|NULL|-1.3285500|-0.2405643	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345427|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_976|NULL|-1.3285500|-0.2405643	chr1	 17245671	 17246024	-	NA	NA	NA	NA	CROCC	NA	chr1:17248445-17258112	inter
LNCA_21_P0007966	0.92591774	A	2.940399	A	0.247503141120035	0	lncRNA	ENST00000416090	NA	NA	NA	NA	XLOC_010494	NA	ENST00000416090	NA	NA	"BROAD Institute lincRNA (XLOC_010494), lincRNA [TCONS_00021597]"	chr13:110381530-110382354	hs|13q34	Agilent_HUMAN_G3V2	ENST00000416090	ENST00000416090	chr13	110381530	110382354	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008459	4.0035715	P	4.9051185	P	0.535312408606865	0	lncRNA	TCONS_00022788	NA	NA	NA	NA	XLOC_011068	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011068), lincRNA [TCONS_00022788]"	chr14:73925780-73925721	hs|14q24.3	Agilent_HUMAN_G3V2	TCONS_00022788	TCONS_00022788	chr14	 73925721	 73925780	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007617	9.275612	P	8.972882	P	1.23347630343894	0	lncRNA	TCONS_00020545	NA	NA	NA	NA	XLOC_009858	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009858), lincRNA [TCONS_00020545]"	chr12:103571914-103571973	hs|12q23.2	Agilent_HUMAN_G3V2	TCONS_00020545	TCONS_00020545	chr12	103571914	103571973	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005913	0.9160736	A	1.8596641	A	0.51993727760192	0	lncRNA	TCONS_00015180	NA	NA	NA	NA	XLOC_007235	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007235), lincRNA [TCONS_00015180]"	chr8:137249557-137249498	hs|8q24.23	Agilent_HUMAN_G3V2	TCONS_00015180	TCONS_00015180	chr8	137249498	137249557	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006974	10.065674	P	10.012583	P	1.03748537533748	0	lncRNA	TCONS_00018449	NA	NA	NA	NA	XLOC_008746	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008746), lincRNA [TCONS_00018449]"	chr10:21702370-21702311	hs|10p12.31	Agilent_HUMAN_G3V2	TCONS_00018449	TCONS_00018449	chr10	 21702311	 21702370	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007709	4.592221	P	5.061508	P	0.722321490912981	0	lncRNA	THC2581444	NA	NA	NA	NA	XLOC_010078	NA	NA	THC2581444	NA	"BROAD Institute lincRNA (XLOC_010078), lincRNA [TCONS_00020785]"	chr12:052233907-052233848	hs|12q13.13	Agilent_HUMAN_G3V2	THC2581444	THC2581444	chr12	 52233848	 52233907	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004363	0.9290319	A	0.90331566	A	1.01798495521365	0	lncRNA	TCONS_00010263	NA	NA	NA	NA	XLOC_004727	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004727), lincRNA [TCONS_00010263]"	chr5:7363130-7363071	hs|5p15.31	Agilent_HUMAN_G3V2	TCONS_00010263	TCONS_00010263	chr5	  7363071	  7363130	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13575_PI429285431	5.063523	P	5.2802877	P	0.860492963445444	0	lncRNA	15216-1_{1..1319}	lnc-AC008686.1-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC008686.1-1:2	chr19	 13783403	 13784721	-	lnc-AC008686.1-1	lnc-AC008686.1-1:2	XLOC_013238	linc-CACNA1A-3	NA	"hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-78.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-81.70;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-85.20;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90;hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-74.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-84.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-33.10;hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0,hg19_refFlat_CREM:range=chr10:35456654-354682575'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0,hg19_refFlat_ITGB3BP:range=chr1:63912478-639888045'pad=0 3'pad=0 strand=- repeatMasking=none,-22.80;hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0,hg19_refFlat_CCNJL:range=chr5:159680385-1597389305'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-76.50;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-71.90;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.80;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.00;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-71.60;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-85.40;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.80;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.90;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0,hg19_refFlat_SLC38A6:range=chr14:61447996-615504305'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-17.00;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.00;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.20;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.70;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-82.60;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-44.70;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-38.10;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.20;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.30;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-78.00;hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0,hg19_refFlat_TRIM61:range=chr4:165876144-1658911545'pad=0 3'pad=0 strand=- repeatMasking=none,-74.40"	NA	inter
LNCA_21_P0006241	1.9042431	A	1.0505903	A	1.80707051031147	0	lncRNA	TCONS_00016213	NA	NA	NA	NA	XLOC_007605	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007605), lincRNA [TCONS_00016213]"	chr9:138056840-138056899	hs|9q34.3	Agilent_HUMAN_G3V2	TCONS_00016213	TCONS_00016213	chr9	138056840	138056899	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_13157_PI429285431	4.4484663	P	4.1519394	P	1.22818415851084	0	lncRNA	14784-1_{1..875}	lnc-FAM213B-3:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-FAM213B-3:1	chr1	  2694757	  2695631	+	lnc-FAM213B-3	lnc-FAM213B-3:1	XLOC_000026	linc-ACTRT2-2	TTC34	NA	chr1:2684757-2705364	inner
LNCA_21_P0007517	0.9268836	A	0.98096275	A	0.963209048418432	0	lncRNA	TCONS_00020286	NA	NA	NA	NA	XLOC_009630	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009630), lincRNA [TCONS_00020286]"	chr12:6281651-6281710	hs|12p13.31	Agilent_HUMAN_G3V2	TCONS_00020286	TCONS_00020286	chr12	  6281651	  6281710	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004229	1.0672325	A	0.95962286	A	1.07744157476213	0	lncRNA	TCONS_00009876	NA	NA	NA	NA	XLOC_004297	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004297), lincRNA [TCONS_00009876]"	chr5:13987096-13987155	hs|5p15.2	Agilent_HUMAN_G3V2	TCONS_00009876	TCONS_00009876	chr5	 13987096	 13987155	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011997	1.4538393	A	0.9199013	A	1.44787594839238	0	lncRNA	ENST00000450695	NA	NA	NA	NA	XLOC_l2_007184	NA	ENST00000450695	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007184), lincRNA [TCONS_l2_00015233]"	chr2:7561921-7562709	hs|2p25.1	Agilent_HUMAN_G3V2	ENST00000450695	ENST00000450695	chr2	  7561921	  7562709	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44101_PI429285431	0.93059903	A	0.91508174	A	1.0108138170042	0	lncRNA	48766-1_{1..2317}	"gi|310119148|ref|XR_108456.1| PREDICTED: Homo sapiens uncharacterized FLJ38379 (FLJ38379), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|310119148|ref|XR_108456.1| PREDICTED: Homo sapiens uncharacterized FLJ38379 (FLJ38379), misc_RNA"	Chr2	242945675	242947991	+	285097	XR_108456.2	NA	NA	NA	NA	NA	inter
LNCA_21_P0005187	9.07048	P	9.445082	P	0.771318168887426	0	lncRNA	TCONS_00012836	NA	NA	NA	NA	XLOC_005944	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005944), lincRNA [TCONS_00012836]"	chr6:170453210-170453151	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012836	TCONS_00012836	chr6	170453151	170453210	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012249	1.2218348	A	1.395139	A	0.886809296932512	0	lncRNA	TCONS_l2_00017601	NA	NA	NA	NA	XLOC_l2_009301	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009301), lincRNA [TCONS_l2_00017601]"	chr22:20300432-20300567	hs|22q11.21	Agilent_HUMAN_G3V2	TCONS_l2_00017601	TCONS_l2_00017601	chr22	 20300432	 20300567	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005226	0.9250494	A	0.90162975	A	1.01636573966797	0	lncRNA	ENST00000439998	NA	CR749435	NA	Hs.511293	XLOC_006050	NA	ENST00000439998	NA	NA	"BROAD Institute lincRNA (XLOC_006050), lincRNA [TCONS_00012997]"	chr7:36880919-36880978	hs|7p14.2	Agilent_HUMAN_G3V2	ENST00000439998	ENST00000439998	chr7	 36880919	 36880978	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006176	0.93295676	A	0.9048757	A	1.01965497224349	0	lncRNA	TCONS_00016062	NA	NA	NA	NA	XLOC_007451	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007451), lincRNA [TCONS_00016062]"	chr9:92767317-92767376	hs|9q22.2	Agilent_HUMAN_G3V2	TCONS_00016062	TCONS_00016062	chr9	 92767317	 92767376	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014516	2.8861244	A	1.7299745	A	2.22861884926394	0	lncRNA	XR_110177	XR_110177	XR_110177	NA	NA	LOC100507406	uncharacterized LOC100507406	ENST00000411615	THC2719752	NA	"PREDICTED: Homo sapiens hypothetical LOC100507406, transcript variant 1 (LOC100507406), miscRNA [XR_110177]"	chr6:138052377-138051704	hs|6q23.3	Agilent_HUMAN_G3V2	XR_110177	XR_110177	chr6	138051704	138052377	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011518	1.5334804	A	0.90950245	A	1.54111866224049	0	lncRNA	ENST00000437646	NA	NA	NA	NA	XLOC_l2_005690	NA	ENST00000437646	THC2673892	NA	"BROAD Institute lincRNA (XLOC_l2_005690), lincRNA [TCONS_l2_00011529]"	chr17:19327523-19327582	hs|17p11.2	Agilent_HUMAN_G3V2	ENST00000437646	ENST00000437646	chr17	 19327523	 19327582	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008131	3.4473782	P	3.921139	P	0.720085040040086	0	lncRNA	TCONS_00021941	NA	NA	NA	NA	XLOC_010535	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010535), lincRNA [TCONS_00021941]"	chr13:25297314-25297255	hs|13q12.12	Agilent_HUMAN_G3V2	TCONS_00021941	TCONS_00021941	chr13	 25297255	 25297314	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007275	0.9530651	A	0.9144483	A	1.02712858341225	0	lncRNA	TCONS_00019475	NA	NA	NA	NA	XLOC_009279	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009279), lincRNA [TCONS_00019475]"	chr11:112236723-112236782	hs|11q23.1	Agilent_HUMAN_G3V2	TCONS_00019475	TCONS_00019475	chr11	112236723	112236782	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014904	1.0240052	A	1.8042448	A	0.582270082915354	0	lncRNA	XR_132901	XR_132901	XR_132901	NA	Hs.713047	LOC100652738	uncharacterized LOC100652738	NA	THC2546809	NA	"PREDICTED: Homo sapiens hypothetical LOC100652738 (LOC100652738), miscRNA [XR_132901]"	chr11:66435565-66435506	hs|11q13.2	Agilent_HUMAN_G3V2	XR_132901	XR_132901	chr11	 66435506	 66435565	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005034	4.272547	P	4.010832	P	1.19890305075932	0	lncRNA	TCONS_00012214	NA	NA	NA	NA	XLOC_005768	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005768), lincRNA [TCONS_00012214]"	chr6:77822946-77822887	hs|6q14.1	Agilent_HUMAN_G3V2	TCONS_00012214	TCONS_00012214	chr6	 77822887	 77822946	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009546	1.01804	A	1.0520496	A	0.976702029757325	0	lncRNA	TCONS_00026494	NA	NA	NA	NA	XLOC_012820	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012820), lincRNA [TCONS_00026494]"	chr18:36155639-36155580	hs|18q12.2	Agilent_HUMAN_G3V2	TCONS_00026494	TCONS_00026494	chr18	 36155580	 36155639	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004079	1.0152667	A	1.051844	A	0.974965247345747	0	lncRNA	ENST00000504362	NA	NA	NA	NA	XLOC_004653	NA	ENST00000504362	NA	NA	"BROAD Institute lincRNA (XLOC_004653), lincRNA [TCONS_00009548]"	chr5:175399652-175399947	hs|5q35.2	Agilent_HUMAN_G3V2	ENST00000504362	ENST00000504362	chr5	175399652	175399947	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012690	7.0939903	P	7.0977225	P	0.997416379400216	0	lncRNA	THC2705642	NA	NA	NA	NA	XLOC_l2_011302	NA	NA	THC2705642	NA	"BROAD Institute lincRNA (XLOC_l2_011302), lincRNA [TCONS_l2_00021341]"	chr4:147033145-147033086	hs|4q31.22	Agilent_HUMAN_G3V2	THC2705642	THC2705642	chr4	147033086	147033145	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002716	0.9299661	A	0.9968415	A	0.954703464631042	0	lncRNA	ENST00000490647	NA	BC032918	NA	NA	XLOC_003226	NA	ENST00000490647	NA	NA	"BROAD Institute lincRNA (XLOC_003226), lincRNA [TCONS_00005465]"	chr3:120552403-120552344	hs|3q13.33	Agilent_HUMAN_G3V2	ENST00000490647	ENST00000490647	chr3	120552344	120552403	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29116_PI429285431	4.566046	P	4.8928742	P	0.797287414014192	0	lncRNA	30851-1_{1..645}	n326616|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021845|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021845|-1.1918400|-0.2412391	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n326616|NULL|mRNAlikelncRNA|Homosapiens|vegalncRNA|GENCODE|OTTHUMT00000021845|http://vega.sanger.ac.uk/Homo_sapiens/Transcript/Summary?db=core;t=OTTHUMT00000021845|-1.1918400|-0.2412391	chr1	 48339973	 48340617	-	NA	NA	NA	NA	LOC388630	"hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.40;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-78.70;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.20;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.80;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-26.70;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-79.40;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-35.20;hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0,hg19_refFlat_ECD:range=chr10:74894341-749236955'pad=0 3'pad=0 strand=- repeatMasking=none,-81.10;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-35.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.30;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-72.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-88.00;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.30;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-78.10;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-75.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-71.70;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-82.40;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-71.60;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.40;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.80;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0,hg19_refFlat_DHRS4L2:range=chr14:24456439-244735795'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.00;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-35.50;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-37.30;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-70.60;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-92.50;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.30;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-70.80chr1:48329973-48410130"	NA	inner
LNCA_21_P0002108	0.9204994	A	0.9286719	A	0.994351269083252	0	lncRNA	ENST00000417715	NA	NA	NA	NA	XLOC_002340	NA	ENST00000417715	NA	NA	"BROAD Institute lincRNA (XLOC_002340), lincRNA [TCONS_00003411]"	chr2:140861220-140861161	hs|2q22.1	Agilent_HUMAN_G3V2	ENST00000417715	ENST00000417715	chr2	140861161	140861220	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010419	0.9196707	A	0.92671967	A	0.995125943271516	0	lncRNA	THC2673506	NA	NA	NA	NA	XLOC_014263	NA	NA	THC2673506	NA	"BROAD Institute lincRNA (XLOC_014263), lincRNA [TCONS_00029612]"	chr22:044710808-044710867	hs|22q13.31	Agilent_HUMAN_G3V2	THC2673506	THC2673506	chr22	 44710808	 44710867	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006893	0.9151793	A	0.9073229	A	1.00546049596685	0	lncRNA	TCONS_00018281	NA	NA	NA	NA	XLOC_008555	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008555), lincRNA [TCONS_00018281]"	chr10:91923770-91923829	hs|10q23.31	Agilent_HUMAN_G3V2	TCONS_00018281	TCONS_00018281	chr10	 91923770	 91923829	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_32_P203066	0.91638154	A	0.9039033	A	1.00868676977149	0	lncRNA	XR_109782	XR_109782	XR_109782	100506955	Hs.123784	LOC100506955	chromosome X open reading frame 61 pseudogene	ENST00000446495	THC2651536	NA	"PREDICTED: Homo sapiens hypothetical LOC100506955 (LOC100506955), miscRNA [XR_109782]"	chrX:115827146-115827087	hs|Xq23	Agilent_HUMAN_G3V2	XR_109782	XR_109782	chrX	115827087	115827146	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30928_PI429285431	6.782921	P	6.1456943	P	1.55533645263739	0	lncRNA	32716-1_{1..211}	n336985|BC107434|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338756|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338756|-0.9306230|-0.2882346	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n336985|BC107434|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000338756|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000338756|-0.9306230|-0.2882346	chr12	 57704109	 57704319	-	NA	NA	NA	NA	R3HDM2	NA	chr12:57694109-57704246	inner
LNCA_21_P0001534	0.9561888	A	0.907703	A	1.03417891762098	0	lncRNA	TCONS_00001563	NA	NA	NA	NA	XLOC_000903	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000903), lincRNA [TCONS_00001563]"	chr1:88817824-88817765	hs|1p22.2	Agilent_HUMAN_G3V2	TCONS_00001563	TCONS_00001563	chr1	 88817765	 88817824	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006774	0.9671246	A	1.1964746	A	0.853019129276059	0	lncRNA	ENST00000421256	NA	NA	NA	NA	XLOC_008867	NA	ENST00000421256	NA	NA	"BROAD Institute lincRNA (XLOC_008867), lincRNA [TCONS_00018003]"	chr10:81390591-81390532	hs|10q22.3	Agilent_HUMAN_G3V2	ENST00000421256	ENST00000421256	chr10	 81390532	 81390591	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009250	5.2476616	P	4.90064	P	1.27193204994108	0	lncRNA	TCONS_00025402	NA	NA	NA	NA	XLOC_012216	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012216), lincRNA [TCONS_00025402]"	chr17:42835297-42835356	hs|17q21.31	Agilent_HUMAN_G3V2	TCONS_00025402	TCONS_00025402	chr17	 42835297	 42835356	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008235	1.0248078	A	1.0469577	A	0.984764117867591	0	lncRNA	TCONS_00022170	NA	NA	NA	NA	XLOC_010374	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010374), lincRNA [TCONS_00022170]"	chr13:45628913-45628972	hs|13q14.12	Agilent_HUMAN_G3V2	TCONS_00022170	TCONS_00022170	chr13	 45628913	 45628972	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002449	1.0226856	A	1.0502005	A	0.981108842158859	0	lncRNA	TCONS_00004275	NA	NA	NA	NA	XLOC_002117	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002117), lincRNA [TCONS_00004275]"	chr2:62817664-62801491	hs|2p15	Agilent_HUMAN_G3V2	TCONS_00004275	TCONS_00004275	chr2	 62801491	 62817664	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012388	2.7403204	A	3.3532279	P	0.653877597015088	0	lncRNA	TCONS_l2_00018729	NA	NA	NA	NA	XLOC_l2_009811	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009811), lincRNA [TCONS_l2_00018729]"	chr3:107183118-107183177	hs|3q13.12	Agilent_HUMAN_G3V2	TCONS_l2_00018729	TCONS_l2_00018729	chr3	107183118	107183177	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21168_PI429285431	0.93105865	A	0.9966214	A	0.955572506080863	0	lncRNA	22792-1_{1..553}	lnc-WRN-8:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,ensembl.GRCh37.72,"	>lnc-WRN-8:2	chr8	 32144617	 32145169	+	lnc-WRN-8	lnc-WRN-8:2	ENSG00000253222.1	NRG1-IT2	NRG1	NA	chr8:32134617-32154963	inner
LNCA_21_P0008251	0.94608504	A	1.0490582	A	0.93111214214487	0	lncRNA	TCONS_00022266	NA	NA	NA	NA	XLOC_010585	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010585), lincRNA [TCONS_00022266]"	chr13:44679507-44679448	hs|13q14.11	Agilent_HUMAN_G3V2	TCONS_00022266	TCONS_00022266	chr13	 44679448	 44679507	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00319160	6.9485407	P	7.0788813	P	0.913615732946795	0	lncRNA	XR_110015	XR_110015	XR_110015	NA	Hs.729396	LOC100506924	NA	ENST00000497310	THC2581494	NA	"PREDICTED: Homo sapiens hypothetical LOC100506924 (LOC100506924), miscRNA [XR_110015]"	chr3:58612963-58612904	hs|3p14.2	Agilent_HUMAN_G3V2	XR_110015	XR_110015	chr3	 58612904	 58612963	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011569	0.9182706	A	1.6341763	A	0.608822802990169	0	lncRNA	TCONS_l2_00011109	NA	NA	NA	NA	XLOC_l2_005997	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005997), lincRNA [TCONS_l2_00011109]"	chr17:15663839-15663780	hs|17p12	Agilent_HUMAN_G3V2	TCONS_l2_00011109	TCONS_l2_00011109	chr17	 15663780	 15663839	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_21216_PI429285431	0.9285036	A	1.6550024	A	0.604368846209167	0	lncRNA	22841-1_{1..605}	lnc-RIMS3-4:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-RIMS3-4:1	chr1	 40974261	 40974865	-	lnc-RIMS3-4	lnc-RIMS3-4:1	ENSG00000238287.1	RP11-656D10.3	DEM1	NA	chr1:40974433-40982228	inter
LNCA_21_P0007238	0.9682139	A	0.9099783	A	1.04119161609347	0	lncRNA	TCONS_00019395	NA	NA	NA	NA	XLOC_009221	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009221), lincRNA [TCONS_00019395]"	chr11:76468619-76468678	hs|11q13.5	Agilent_HUMAN_G3V2	TCONS_00019395	TCONS_00019395	chr11	 76468619	 76468678	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_24088_PI429285431	1.5679162	A	1.2172651	A	1.27513597671177	0	lncRNA	25639-1_{1..515}	lnc-MBIP-2:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-MBIP-2:3	chr14	 36645500	 36646014	-	lnc-MBIP-2	lnc-MBIP-2:3	ENSG00000259104.1	PTCSC3	NA	NA	NA	inter
LNCA_21_P0005127	3.9059243	P	2.6862605	A	2.32892438628043	0	lncRNA	TCONS_00012566	NA	NA	NA	NA	XLOC_005419	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005419), lincRNA [TCONS_00012566]"	chr6:108582708-108583601	hs|6q21	Agilent_HUMAN_G3V2	TCONS_00012566	TCONS_00012566	chr6	108582708	108583601	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011947	1.1312737	A	1.0200832	A	1.08011917425419	0	lncRNA	TCONS_l2_00014782	NA	NA	NA	NA	XLOC_l2_008200	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008200), lincRNA [TCONS_l2_00014782]"	chr2:110990424-110990483	hs|2q13	Agilent_HUMAN_G3V2	TCONS_l2_00014782	TCONS_l2_00014782	chr2	110990424	110990483	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_15222_PI429285431	5.521135	P	5.9222364	P	0.757279930554059	0	lncRNA	16892-2_{3001..4109}	lnc-RP11-701P16.2.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-RP11-701P16.2.1-1:1	chr4	185768276	185769384	+	lnc-RP11-701P16.2.1-1	lnc-RP11-701P16.2.1-1:1	XLOC_003809	linc-HELT-4	NA	"hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-88.10;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-93.00;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-84.10;hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0,hg19_refFlat_KIF13A:range=chr6:17951594-179876945'pad=0 3'pad=0 strand=- repeatMasking=none,-70.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-68.60;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352754675'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-78.90;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.00;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-67.20;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-46.30;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.20;hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0,hg19_refFlat_TCTN1:range=chr12:111051988-1110856975'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.30;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-74.10;hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0,hg19_refFlat_TTF1:range=chr9:135251302-1352782085'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-77.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-81.30;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-81.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-73.70;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-92.10;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-46.90;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-87.80;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.10;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0,hg19_refFlat_FAM115C:range=chr7:143412963-1434247605'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-87.60;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-46.80;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.90;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-38.70;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-82.70;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-84.40;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.00;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.10;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.50;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-77.90;hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0,hg19_refFlat_CC2D2A:range=chr4:15477557-154829095'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.50;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.30;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-93.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-90.50;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-72.20;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.10;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-27.80;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.84"	NA	inter
LNCA_21_P0007760	0.92640287	A	0.9025138	A	1.0166964956625	0	lncRNA	TCONS_00020922	NA	NA	NA	NA	XLOC_010200	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010200), lincRNA [TCONS_00020922]"	chr12:111458712-111458653	hs|12q24.11	Agilent_HUMAN_G3V2	TCONS_00020922	TCONS_00020922	chr12	111458653	111458712	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010996	0.957363	A	1.0736907	A	0.922532920729993	0	lncRNA	TCONS_l2_00004761	NA	NA	NA	NA	XLOC_l2_002469	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002469), lincRNA [TCONS_l2_00004761]"	chr11:112151427-112214061	hs|11q23.1	Agilent_HUMAN_G3V2	TCONS_l2_00004761	TCONS_l2_00004761	chr11	112151427	112214061	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29631_PI429285431	1.0958836	A	1.3440591	A	0.841960525128461	0	lncRNA	31392-1_{1..544}	n333192|AF436089|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079647_09|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079647_09|-1.2722700|-0.2960716	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333192|AF436089|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000079647_09|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000079647_09|-1.2722700|-0.2960716	chr6	  1096409	  1096952	+	NA	NA	NA	NA	NA	NA	NA	inter
CUST_45227_PI429285431	3.587796	P	2.296813	A	2.44694724848588	0	lncRNA	49684-1_{1..2170}	"gi|282847412|ref|NR_033194.1| Homo sapiens zinc finger, AN1-type domain 1 (ZFAND1), transcript variant 5, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|282847412|ref|NR_033194.1| Homo sapiens zinc finger, AN1-type domain 1 (ZFAND1), transcript variant 5, non-coding RNA"	Chr8	 82613566	 82615735	-	79752	NR_033194.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0005589	1.0169499	A	1.0532442	A	0.975156515923511	0	lncRNA	TCONS_00014240	NA	NA	NA	NA	XLOC_006316	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006316), lincRNA [TCONS_00014240]"	chr7:157308538-157308597	hs|7q36.3	Agilent_HUMAN_G3V2	TCONS_00014240	TCONS_00014240	chr7	157308538	157308597	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006735	0.99866104	A	1.4848441	A	0.713911397646346	0	lncRNA	ENST00000455871	NA	NA	NA	NA	XLOC_008728	NA	ENST00000455871	NA	NA	"BROAD Institute lincRNA (XLOC_008728), lincRNA [TCONS_00017925]"	chr10:10407205-10407146	hs|10p14	Agilent_HUMAN_G3V2	ENST00000455871	ENST00000455871	chr10	 10407146	 10407205	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009329	3.77468	P	4.400717	P	0.647953864789975	0	lncRNA	TCONS_00025688	NA	NA	NA	NA	XLOC_012503	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012503), lincRNA [TCONS_00025688]"	chr17:46124618-46124321	hs|17q21.32	Agilent_HUMAN_G3V2	TCONS_00025688	TCONS_00025688	chr17	 46124321	 46124618	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004028	0.96844715	A	1.0265529	A	0.960524454628536	0	lncRNA	ENST00000505109	NA	NA	NA	NA	XLOC_004465	NA	ENST00000505109	THC2670954	NA	"BROAD Institute lincRNA (XLOC_004465), lincRNA [TCONS_00009457]"	chr5:89197005-89200725	hs|5q14.3	Agilent_HUMAN_G3V2	ENST00000505109	ENST00000505109	chr5	 89197005	 89200725	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005962	0.9365903	A	1.0074792	A	0.952051221855616	0	lncRNA	ENST00000523946	XR_133480	XR_133480	NA	Hs.532031	XLOC_007052	NA	ENST00000523946	THC2500167	NA	"PREDICTED: Homo sapiens hypothetical LOC100507403 (LOC100507403), miscRNA [XR_133480]"	chr8:37185003-37184944	hs|8p11.23	Agilent_HUMAN_G3V2	ENST00000523946	ENST00000523946	chr8	 37184944	 37185003	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005719	6.1105723	P	6.398852	P	0.818877923931418	0	lncRNA	TCONS_00014758	NA	NA	NA	NA	XLOC_006843	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006843), lincRNA [TCONS_00014758]"	chr8:74006063-74006122	hs|8q21.11	Agilent_HUMAN_G3V2	TCONS_00014758	TCONS_00014758	chr8	 74006063	 74006122	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17102_PI429285431	2.0977054	A	2.5546436	A	0.728530763985582	0	lncRNA	18811-1_{1..436}	lnc-KRT7-1:7	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-KRT7-1:7	chr12	 52617230	 52617665	+	lnc-KRT7-1	lnc-KRT7-1:7	XLOC_009756	linc-KRT7-1	KRT7	NA	chr12:52626954-52627561	inter
LNCA_21_P0005568	1.1472278	A	0.90324295	A	1.18425917566982	0	lncRNA	TCONS_00014163	NA	NA	NA	NA	XLOC_006150	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006150), lincRNA [TCONS_00014163]"	chr7:76264226-76264286	hs|7q11.23	Agilent_HUMAN_G3V2	TCONS_00014163	TCONS_00014163	chr7	 76264226	 76264286	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_34480_PI429285431	1.314039	A	0.93772125	A	1.29802462215812	0	lncRNA	35948-1_{1..2229}	n341357|AL832552|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3826|NULL|-1.2249300|-0.2855453	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n341357|AL832552|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|3826|NULL|-1.2249300|-0.2855453	chr7	149119765	149121993	+	NA	NA	NA	NA	ZNF777	NA	chr7:149128454-149131981	inter
LNCA_21_P0001145	0.9478681	A	0.90643084	A	1.02913857764718	0	lncRNA	ENST00000437080	NA	NA	NA	NA	XLOC_000883	NA	ENST00000437080	NA	NA	"BROAD Institute lincRNA (XLOC_000883), lincRNA [TCONS_00000553]"	chr1:81000769-81000710	hs|1p31.1	Agilent_HUMAN_G3V2	ENST00000437080	ENST00000437080	chr1	 81000710	 81000769	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3362249	7.7765274	P	7.9719024	P	0.873345857453866	0	lncRNA	XR_132538	XR_132538	XR_132538	100288292	Hs.520384	LOC100288292	putative uncharacterized protein FLJ44672-like	NA	THC2481823	NA	"PREDICTED: Homo sapiens putative uncharacterized protein FLJ44672-like (LOC100288292), miscRNA [XR_132538]"	chr7:63226669-63226728	hs|7q11.21	Agilent_HUMAN_G3V2	XR_132538	XR_132538	chr7	 63226669	 63226728	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010640	3.0179546	A	2.3165188	A	1.62612233831886	0	lncRNA	TCONS_l2_00001430	NA	NA	NA	NA	XLOC_l2_001037	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001037), lincRNA [TCONS_l2_00001430]"	chr1:106470081-106470022	hs|1p21.1	Agilent_HUMAN_G3V2	TCONS_l2_00001430	TCONS_l2_00001430	chr1	106470022	106470081	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007375	6.8935227	P	6.2695765	P	1.54108474656342	0	lncRNA	TCONS_00019713	NA	NA	NA	NA	XLOC_009508	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009508), lincRNA [TCONS_00019713]"	chr11:76479197-76476266	hs|11q13.5	Agilent_HUMAN_G3V2	TCONS_00019713	TCONS_00019713	chr11	 76476266	 76479197	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008230	7.668862	P	6.8003464	P	1.8257833711704	0	lncRNA	TCONS_00022140	NA	NA	NA	NA	XLOC_010305	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010305), lincRNA [TCONS_00022140]"	chr13:23506276-23507309	hs|13q12.12	Agilent_HUMAN_G3V2	TCONS_00022140	TCONS_00022140	chr13	 23506276	 23507309	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003667	2.1028879	A	1.0468314	A	2.07924029766066	0	lncRNA	TCONS_00008291	NA	NA	NA	NA	XLOC_003741	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003741), lincRNA [TCONS_00008291]"	chr4:153602533-153602592	hs|4q31.3	Agilent_HUMAN_G3V2	TCONS_00008291	TCONS_00008291	chr4	153602533	153602592	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014669	1.050724	A	1.0128828	A	1.02657654240148	0	lncRNA	XR_111096	XR_111096	XR_111096	NA	NA	LOC100509474	uncharacterized LOC100509474	NA	THC2603197	NA	"PREDICTED: Homo sapiens hypothetical LOC100509474 (LOC100509474), miscRNA [XR_111096]"	chr10:97964985-97965044	hs|10q24.1	Agilent_HUMAN_G3V2	XR_111096	XR_111096	chr10	 97964985	 97965044	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008053	2.059586	A	0.960426	A	2.14229922179517	0	lncRNA	TCONS_00021760	NA	NA	NA	NA	XLOC_010354	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010354), lincRNA [TCONS_00021760]"	chr13:40214502-40214561	hs|13q14.11	Agilent_HUMAN_G3V2	TCONS_00021760	TCONS_00021760	chr13	 40214502	 40214561	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003142	0.9169173	A	0.9049554	A	1.00832582575943	0	lncRNA	THC2664411	NA	NA	NA	NA	XLOC_003199	NA	NA	THC2664411	NA	"BROAD Institute lincRNA (XLOC_003199), lincRNA [TCONS_00006573]"	chr3:106086973-106086914	hs|3q13.11	Agilent_HUMAN_G3V2	THC2664411	THC2664411	chr3	106086914	106086973	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00321849	0.92235225	A	0.9711675	A	0.966729887544785	0	lncRNA	ENST00000507926	NA	NA	NA	NA	XLOC_l2_011969	NA	ENST00000507926	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011969), lincRNA [TCONS_l2_00023693]"	chr5:25415892-25415833	hs|5p14.1	Agilent_HUMAN_G3V2	ENST00000507926	ENST00000507926	chr5	 25415833	 25415892	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_47901_PI429285431	5.150053	P	5.3961225	P	0.843190489641513	0	lncRNA	51794-1_{1..1852}	"gi|410171860|ref|XR_171431.1| PREDICTED: Homo sapiens uncharacterized LOC100508227 (LOC100508227), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"ncbi,"	">gi|410171860|ref|XR_171431.1| PREDICTED: Homo sapiens uncharacterized LOC100508227 (LOC100508227), misc_RNA"	NA	NA	NA	NA	NA	XR_171431.1	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3262694	9.169797	P	9.784014	P	0.653284357136622	0	lncRNA	XR_132608	XR_132608	XR_132608	   647086	NA	LOC647086	chromosome 20 open reading frame 27 pseudogene	NA	THC2659533	NA	"PREDICTED: Homo sapiens UPF0687 protein C20orf27-like (LOC647086), miscRNA [XR_132608]"	chr16:30831898-30831839	hs|16p11.2	Agilent_HUMAN_G3V2	XR_132608	XR_132608	chr16	 30831839	 30831898	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003754	1.8569775	A	1.0749075	A	1.71959640579992	0	lncRNA	TCONS_00008546	NA	NA	NA	NA	XLOC_004041	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004041), lincRNA [TCONS_00008546]"	chr4:108908165-108908106	hs|4q25	Agilent_HUMAN_G3V2	TCONS_00008546	TCONS_00008546	chr4	108908106	108908165	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014106	2.451251	A	0.91378754	A	2.90283679058477	0	lncRNA	XR_108460	XR_108460	XR_108460	NA	Hs.278908	MORC1-AS1	MORC1 antisense RNA 1 (non-protein coding)	ENST00000480826	THC2642372	NA	"PREDICTED: Homo sapiens hypothetical LOC100506506 (LOC100506506), miscRNA [XR_108460]"	chr3:108829086-108829145	hs|3q13.13	Agilent_HUMAN_G3V2	XR_108460	XR_108460	chr3	108829086	108829145	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3256828	6.2790155	P	6.525009	P	0.843234909399904	0	lncRNA	XR_108305	XR_108305	XR_108305	100127910	Hs.647752	LOC100127910	uncharacterized LOC100127910	NA	THC2484248	NA	"PREDICTED: Homo sapiens hypothetical LOC100127910 (LOC100127910), miscRNA [XR_108305]"	chr1:170637048-170637107	hs|1q24.2	Agilent_HUMAN_G3V2	XR_108305	XR_108305	chr1	170637048	170637107	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37038_PI429285431	4.737344	P	4.7640796	P	0.981638950488849	0	lncRNA	38176-1_{1..1511}	n345493|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1042|NULL|-1.3310300|-0.2483638	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345493|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1042|NULL|-1.3310300|-0.2483638	chr2	 43090035	 43091545	+	NA	NA	NA	NA	NA	"hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-67.30;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0,hg19_refFlat_FAHD1:range=chr16:1877231-18881275'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.80;hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0,hg19_refFlat_NEK2:range=chr1:211831999-2118488215'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-68.40;hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0,hg19_refFlat_RTBDN:range=chr19:12937421-129459125'pad=0 3'pad=0 strand=- repeatMasking=none,-64.00;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-72.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.80"	NA	inter
LNCA_21_P0008850	8.343713	P	8.118776	P	1.16872621119237	0	lncRNA	THC2512099	NA	NA	NA	NA	XLOC_011510	NA	NA	THC2512099	NA	"BROAD Institute lincRNA (XLOC_011510), lincRNA [TCONS_00024144]"	NA	NA	Agilent_HUMAN_G3V2	THC2512099	THC2512099	NA	NA	NA	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3283485	5.9691014	P	5.850681	P	1.08554565279636	0	lncRNA	XR_111632	XR_111632	XR_111632	   440337	Hs.683875	LOC440337	uncharacterized LOC440337	NA	THC2688565	NA	"PREDICTED: Homo sapiens hypothetical LOC440337 (LOC440337), miscRNA [XR_111632]"	chr16:6427992-6428051	hs|16p13.3	Agilent_HUMAN_G3V2	XR_111632	XR_111632	chr16	  6427992	  6428051	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012349	3.7966042	P	4.0536575	P	0.836795326922568	0	lncRNA	ENST00000456279	NA	NA	NA	NA	XLOC_l2_009492	NA	ENST00000456279	NA	NA	"BROAD Institute lincRNA (XLOC_l2_009492), lincRNA [TCONS_l2_00018353]"	chr22:23734855-23734796	hs|22q11.23	Agilent_HUMAN_G3V2	ENST00000456279	ENST00000456279	chr22	 23734796	 23734855	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16643_PI429285431	1.9903044	A	1.7439988	A	1.18616573328084	0	lncRNA	18344-1_{1..1104}	lnc-STX18-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-STX18-2:1	chr4	  4715704	  4716807	-	lnc-STX18-2	lnc-STX18-2:1	XLOC_003864	linc-STX18-3	NA	"hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-36.00;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.20;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-17.50;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.40;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0,hg19_refFlat_FAM193A:range=chr4:2632732-27217615'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.30;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.00;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-77.80;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-82.50;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.20;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.10;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-73.60;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.30"	NA	inter
LNCA_21_P0005670	0.9268001	A	1.2811813	A	0.782205074177013	0	lncRNA	TCONS_00014647	NA	NA	NA	NA	XLOC_006736	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006736), lincRNA [TCONS_00014647]"	chr8:21467678-21467737	hs|8p21.3	Agilent_HUMAN_G3V2	TCONS_00014647	TCONS_00014647	chr8	 21467678	 21467737	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_17576_PI429285431	4.742932	P	4.2073874	P	1.4494892160131	0	lncRNA	19302-4_{9001..12000}	lnc-NAP1L2-1:5	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-NAP1L2-1:5	chrX	 73070217	 73073216	-	lnc-NAP1L2-1	lnc-NAP1L2-1:5	XLOC_008185	linc-NAP1L2-4	NA	"hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-34002705'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0,hg19_refFlat_ARHGAP8:range=chr22:45182408-452584755'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0,hg19_refFlat_ZNF195:range=chr11:3380348-33948215'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0,hg19_refFlat_EIF4E:range=chr4:99802179-998502635'pad=0 3'pad=0 strand=- repeatMasking=none,-71.20;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.70;hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0,hg19_refFlat_GDPD2:range=chrX:69644835-696529365'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-43.70"	NA	inter
CUST_36762_PI429285431	0.9183192	A	0.91249317	A	1.0040464611738	0	lncRNA	37935-1_{1..727}	n345242|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_791|NULL|-1.4118700|-0.3474430	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345242|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_791|NULL|-1.4118700|-0.3474430	chr14	 31721228	 31721954	-	NA	NA	NA	NA	NA	"hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-72.50;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-30.30;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.60;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-44.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.70;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-30.00;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-27.50;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-66.40;hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0,hg19_refFlat_MCU:range=chr10:74451910-746455805'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.50;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.10;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-69.60;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80"	NA	inter
CUST_37272_PI429285431	2.26499	A	1.4059718	A	1.81380353935909	0	lncRNA	38380-1_{1..2734}	n345711|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1260|NULL|-1.3305300|-0.3732501	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"lncipedia2.1,NONCODERv3,"	>n345711|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1260|NULL|-1.3305300|-0.3732501	chr5	 56946506	 56949239	+	NA	NA	NA	NA	NA	"hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0,hg19_refFlat_ZNF695:range=chr1:247109099-2471712105'pad=0 3'pad=0 strand=- repeatMasking=none,-69.60"	NA	inter
LNCA_21_P0003411	2.770907	A	4.368044	P	0.33053226206703	0	lncRNA	ENST00000504710	NA	NA	NA	NA	XLOC_003719	NA	ENST00000504710	THC2697586	NA	"BROAD Institute lincRNA (XLOC_003719), lincRNA [TCONS_00007648]"	chr4:146520475-146521575	hs|4q31.21	Agilent_HUMAN_G3V2	ENST00000504710	ENST00000504710	chr4	146520475	146521575	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008464	3.719654	P	3.097474	P	1.53919924867277	0	lncRNA	TCONS_00022802	NA	NA	NA	NA	XLOC_011080	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011080), lincRNA [TCONS_00022802]"	chr14:77507409-77507350	hs|14q24.3	Agilent_HUMAN_G3V2	TCONS_00022802	TCONS_00022802	chr14	 77507350	 77507409	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009962	1.0548186	A	0.910618	A	1.10511813562714	0	lncRNA	TCONS_00028195	NA	NA	NA	NA	XLOC_013547	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013547), lincRNA [TCONS_00028195]"	chr20:46680963-46691424	hs|20q13.13	Agilent_HUMAN_G3V2	TCONS_00028195	TCONS_00028195	chr20	 46680963	 46691424	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005027	1.5113618	A	0.91286975	A	1.51413311980509	0	lncRNA	TCONS_00012174	NA	NA	NA	NA	XLOC_005729	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005729), lincRNA [TCONS_00012174]"	chr6:43696385-43696326	hs|6p21.1	Agilent_HUMAN_G3V2	TCONS_00012174	TCONS_00012174	chr6	 43696326	 43696385	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010293	2.1758947	A	2.9479728	A	0.585573389856055	0	lncRNA	TCONS_00029166	NA	NA	NA	NA	XLOC_014105	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014105), lincRNA [TCONS_00029166]"	chr21:44896308-44895893	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029166	TCONS_00029166	chr21	 44895893	 44896308	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32491_PI429285431	4.630704	P	4.5798388	P	1.03588596974804	0	lncRNA	34159-1_{1..1414}	n339096|U72507|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1526|NULL|-0.9674480|-0.2658420	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339096|U72507|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1526|NULL|-0.9674480|-0.2658420	chr12	  7087682	  7089095	+	NA	NA	NA	NA	PHB2	"hg19_refFlat_LPCAT3:range=chr12:7086308-71257285'pad=0,hg19_refFlat_LPCAT3:range=chr12:7086308-71257285'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90chr12:7077682-7079916"	NA	inner
LNCA_21_P0007360	0.9641441	A	1.681051	A	0.608400439348935	0	lncRNA	TCONS_00019653	NA	NA	NA	NA	XLOC_009458	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009458), lincRNA [TCONS_00019653]"	chr11:63538492-63538433	hs|11q13.1	Agilent_HUMAN_G3V2	TCONS_00019653	TCONS_00019653	chr11	 63538433	 63538492	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003088	1.623977	A	2.117381	A	0.710347074207248	0	lncRNA	TCONS_00006375	NA	NA	NA	NA	XLOC_002995	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002995), lincRNA [TCONS_00006375]"	chr3:195363088-195363147	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00006375	TCONS_00006375	chr3	195363088	195363147	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_14874_PI429285431	2.658729	A	1.8101317	A	1.80074924573522	0	lncRNA	16539-1_{1..249}	lnc-SETD6-6:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-SETD6-6:1	chr16	 61502737	 61502985	+	lnc-SETD6-6	lnc-SETD6-6:1	XLOC_011746	linc-CDH5-9	NA	NA	NA	inter
LNCA_21_P0002216	2.66279	A	1.7405537	A	1.8950505073892	0	lncRNA	TCONS_00003680	NA	NA	NA	NA	XLOC_001474	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001474), lincRNA [TCONS_00003680]"	chr2:54660021-54660080	hs|2p16.2	Agilent_HUMAN_G3V2	TCONS_00003680	TCONS_00003680	chr2	 54660021	 54660080	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_23899_PI429285431	0.93007815	A	0.912762	A	1.01207496129775	0	lncRNA	25456-1_{1..1416}	lnc-MAP3K13-1:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,ncbi,"	>lnc-MAP3K13-1:2	chr3	184909475	184910890	+	lnc-MAP3K13-1	lnc-MAP3K13-1:2	ENSG00000223358.1	RP11-29A1.3	EHHADH	"hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0,hg19_refFlat_NLRP12:range=chr19:54297303-543089395'pad=0 3'pad=0 strand=- repeatMasking=none,-72.90chr3:184908412-184919743"	NA	inner
CUST_7694_PI429285431	3.3004537	P	2.4988902	A	1.74298904271179	0	lncRNA	9327-1_{1..391}	lnc-RPIA-1:3	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-RPIA-1:3	chr2	 89076018	 89076408	+	lnc-RPIA-1	lnc-RPIA-1:3	ENSG00000230006	ANKRD36BP2	NA	NA	NA	inter
LNCA_21_P0011922	0.9186187	A	0.9038244	A	1.01030738621089	0	lncRNA	THC2684423	NA	NA	NA	NA	XLOC_l2_008043	NA	NA	THC2684423	NA	"BROAD Institute lincRNA (XLOC_l2_008043), lincRNA [TCONS_l2_00014609]"	chr2:063902929-063902870	hs|2p15	Agilent_HUMAN_G3V2	THC2684423	THC2684423	chr2	 63902870	 63902929	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014065	0.92190385	A	0.9024544	A	1.01357261432324	0	lncRNA	XR_108327	XR_108327	XR_108327	NA	NA	LOC100289488	uncharacterized LOC100289488	NA	THC2550463	NA	"PREDICTED: Homo sapiens hypothetical LOC100289488 (LOC100289488), miscRNA [XR_108327]"	chr1:201969238-201969179	hs|1q32.1	Agilent_HUMAN_G3V2	XR_108327	XR_108327	chr1	201969179	201969238	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004875	0.92322505	A	0.9024081	A	1.01453381376392	0	lncRNA	TCONS_00011790	NA	NA	NA	NA	XLOC_005264	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005264), lincRNA [TCONS_00011790]"	chr6:34204075-34204134	hs|6p21.31	Agilent_HUMAN_G3V2	TCONS_00011790	TCONS_00011790	chr6	 34204075	 34204134	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00810491	4.6393948	P	5.18374	P	0.685702553593025	0	lncRNA	ENST00000457669	NA	NA	NA	NA	XLOC_014068	NA	ENST00000457669	THC2680257	NA	"BROAD Institute lincRNA (XLOC_014068), lincRNA [TCONS_00028921]"	chr21:38005192-38005133	hs|21q22.13	Agilent_HUMAN_G3V2	ENST00000457669	ENST00000457669	chr21	 38005133	 38005192	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3285145	0.948609	A	0.90657884	A	1.0295616065228	0	lncRNA	XR_109830	XR_109830	XR_109830	100131826	Hs.729216	LOC100131826	TSSP3028	NA	THC2487368	NA	"PREDICTED: Homo sapiens TSSP3028 (LOC100131826), miscRNA [XR_109830]"	chr4:77906255-77906314	hs|4q21.1	Agilent_HUMAN_G3V2	XR_109830	XR_109830	chr4	 77906255	 77906314	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005383	0.96276367	A	0.9083525	A	1.0384351837778	0	lncRNA	TCONS_00013448	NA	NA	NA	NA	XLOC_006101	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006101), lincRNA [TCONS_00013448]"	chr7:52842544-52842603	hs|7p12.1	Agilent_HUMAN_G3V2	TCONS_00013448	TCONS_00013448	chr7	 52842544	 52842603	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3303250	1.8104354	A	2.5850968	A	0.584525796174104	0	lncRNA	XR_109859	XR_109859	XR_109859	100129999	Hs.650691	LOC100129999	uncharacterized LOC100129999	NA	NP852688	NA	"PREDICTED: Homo sapiens hypothetical LOC100129999 (LOC100129999), miscRNA [XR_109859]"	chr9:139015756-139015815	hs|9q34.3	Agilent_HUMAN_G3V2	XR_109859	XR_109859	chr9	139015756	139015815	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3326898	4.3673725	P	4.995332	P	0.647090992422982	0	lncRNA	XR_133519	XR_133519	XR_133519	100132249	NA	LOC100132249	uncharacterized LOC100132249	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100132249 (LOC100132249), partial miscRNA [XR_133519]"	chr9:68378832-68378891	hs|9q13	Agilent_HUMAN_G3V2	XR_133519	XR_133519	chr9	 68378832	 68378891	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3263202	1.022314	A	1.0549371	A	0.977641139034814	0	lncRNA	XR_110295	XR_110295	XR_110295	   341883	Hs.666245	LRRC9	leucine rich repeat containing 9	NA	NA	NA	"PREDICTED: Homo sapiens leucine rich repeat containing 9 (LRRC9), miscRNA [XR_110295]"	chr14:60522829-60522888	hs|14q23.1	Agilent_HUMAN_G3V2	XR_110295	XR_110295	chr14	 60522829	 60522888	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011787	4.3419867	P	3.953241	P	1.30925462392873	0	lncRNA	TCONS_l2_00013424	NA	NA	NA	NA	XLOC_l2_007167	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007167), lincRNA [TCONS_l2_00013424]"	chr2:748479-748538	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_l2_00013424	TCONS_l2_00013424	chr2	   748479	   748538	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001598	3.4166863	P	3.616424	P	0.870708854664406	0	lncRNA	TCONS_00001741	NA	NA	NA	NA	XLOC_001117	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001117), lincRNA [TCONS_00001741]"	chr1:182667403-182667344	hs|1q25.3	Agilent_HUMAN_G3V2	TCONS_00001741	TCONS_00001741	chr1	182667344	182667403	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7994_PI429285431	7.83324	P	8.355337	P	0.696358918876044	0	lncRNA	9605-1_{1..2328}	lnc-CCT4-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-CCT4-2:1	chr2	 62603286	 62605613	-	lnc-CCT4-2	lnc-CCT4-2:1	ENSG00000250876	ENST00000506268	NA	"hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40;hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0,hg19_refFlat_ZNF669:range=chr1:247263676-2472675015'pad=0 3'pad=0 strand=- repeatMasking=none,-75.00;hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0,hg19_refFlat_DHPS:range=chr19:12786652-127919275'pad=0 3'pad=0 strand=- repeatMasking=none,-67.70;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.00;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-79.70;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.90;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-77.00;hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0,hg19_refFlat_SULT1C2:range=chr2:108910124-1089249205'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.00;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00"	NA	inter
LNCA_21_P0014406	1.7517569	A	0.9265077	A	1.77184106591603	0	lncRNA	ENST00000452336	XR_109625	XR_109625	NA	NA	LOC100506175	NA	ENST00000452336	THC2646917	NA	"PREDICTED: Homo sapiens hypothetical LOC100506175 (LOC100506175), miscRNA [XR_109625]"	chr20:49276575-49276634	hs|20q13.13	Agilent_HUMAN_G3V2	ENST00000452336	ENST00000452336	chr20	 49276575	 49276634	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008688	0.91950285	A	0.92543066	A	0.995899584964884	0	lncRNA	TCONS_00023541	NA	NA	NA	NA	XLOC_011374	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011374), lincRNA [TCONS_00023541]"	chr15:98101121-98101180	hs|15q26.2	Agilent_HUMAN_G3V2	TCONS_00023541	TCONS_00023541	chr15	 98101121	 98101180	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_25841_PI429285431	6.042267	P	5.870919	P	1.12611018829366	0	lncRNA	27362-1_{1..709}	lnc-DCAF4L2-2:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-DCAF4L2-2:2	chr8	 88767880	 88768588	-	lnc-DCAF4L2-2	lnc-DCAF4L2-2:2	ENSG00000253500.1	AF121898.3	NA	NA	NA	inter
LNCA_21_P0008028	2.2939243	A	2.1123202	A	1.13414421381155	0	lncRNA	TCONS_00021716	NA	NA	NA	NA	XLOC_010301	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010301), lincRNA [TCONS_00021716]"	chr13:22326655-22326714	hs|13q12.11	Agilent_HUMAN_G3V2	TCONS_00021716	TCONS_00021716	chr13	 22326655	 22326714	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006075	2.0065923	A	2.2985244	A	0.816807432996919	0	lncRNA	ENST00000447613	NA	NA	NA	NA	XLOC_007693	NA	ENST00000447613	NA	NA	"BROAD Institute lincRNA (XLOC_007693), lincRNA [TCONS_00015813]"	chr9:43145042-43144983	hs|9p12	Agilent_HUMAN_G3V2	ENST00000447613	ENST00000447613	chr9	 43144983	 43145042	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014308	6.284355	P	6.8026533	P	0.698194888480584	0	lncRNA	ENST00000455294	XR_109237	XR_109237	NA	Hs.706105	LOC100507146	NA	ENST00000455294	THC2680725	NA	"PREDICTED: Homo sapiens hypothetical LOC100507146 (LOC100507146), miscRNA [XR_109237]"	chr16:698572-698513	hs|16p13.3	Agilent_HUMAN_G3V2	ENST00000455294	ENST00000455294	chr16	   698513	   698572	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004929	1.0265673	A	1.0493922	A	0.984303479767893	0	lncRNA	TCONS_00011935	NA	NA	NA	NA	XLOC_005443	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005443), lincRNA [TCONS_00011935]"	chr6:115807353-115807412	hs|6q22.1	Agilent_HUMAN_G3V2	TCONS_00011935	TCONS_00011935	chr6	115807353	115807412	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003959	1.0095602	A	1.0521832	A	0.970888145702825	0	lncRNA	ENST00000506093	NA	NA	NA	NA	XLOC_004272	NA	ENST00000506093	NA	NA	"BROAD Institute lincRNA (XLOC_004272), lincRNA [TCONS_00009339]"	chr5:6771815-6771874	hs|5p15.31	Agilent_HUMAN_G3V2	ENST00000506093	ENST00000506093	chr5	  6771815	  6771874	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014493	5.714386	P	6.144593	P	0.742155292145213	0	lncRNA	XR_110081	XR_110081	XR_110081	NA	NA	LOC100507602	uncharacterized LOC100507602	ENST00000433265	THC2722044	NA	"PREDICTED: Homo sapiens hypothetical LOC100507602 (LOC100507602), miscRNA [XR_110081]"	chr5:180691067-180691126	hs|5q35.3	Agilent_HUMAN_G3V2	XR_110081	XR_110081	chr5	180691067	180691126	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010376	6.224097	P	6.3289804	P	0.92988009337924	0	lncRNA	ENST00000416352	NA	NA	NA	NA	XLOC_014338	NA	ENST00000416352	NA	NA	"BROAD Institute lincRNA (XLOC_014338), lincRNA [TCONS_00029466]"	chr22:30102204-30102145	hs|22q12.2	Agilent_HUMAN_G3V2	ENST00000416352	ENST00000416352	chr22	 30102145	 30102204	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006332	0.9222616	A	0.93592435	A	0.990574405392904	0	lncRNA	THC2692338	NA	NA	NA	NA	XLOC_007892	NA	NA	THC2692338	NA	"BROAD Institute lincRNA (XLOC_007892), lincRNA [TCONS_00016503]"	chr9:138469336-138469277	hs|9q34.3	Agilent_HUMAN_G3V2	THC2692338	THC2692338	chr9	138469277	138469336	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009898	0.9176976	A	1.785441	A	0.548003343289491	0	lncRNA	ENST00000419613	NA	NA	NA	NA	XLOC_013723	NA	ENST00000419613	NA	NA	"BROAD Institute lincRNA (XLOC_013723), lincRNA [TCONS_00028036]"	chr20:31802850-31802791	hs|20q11.21	Agilent_HUMAN_G3V2	ENST00000419613	ENST00000419613	chr20	 31802791	 31802850	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014807	3.9474282	P	4.393419	P	0.734079999196558	0	lncRNA	XR_132628	XR_132628	XR_132628	NA	Hs.673583	LOC100652861	uncharacterized LOC100652861	NA	THC2624306	NA	"PREDICTED: Homo sapiens hypothetical LOC100652861 (LOC100652861), miscRNA [XR_132628]"	chr17:18283418-18283359	hs|17p11.2	Agilent_HUMAN_G3V2	XR_132628	XR_132628	chr17	 18283359	 18283418	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004130	0.9166005	A	0.91454494	A	1.00142582113625	0	lncRNA	ENST00000431789	NA	NA	NA	NA	XLOC_004832	NA	ENST00000431789	NA	NA	"BROAD Institute lincRNA (XLOC_004832), lincRNA [TCONS_00009670]"	chr5:55832755-55832696	hs|5q11.2	Agilent_HUMAN_G3V2	ENST00000431789	ENST00000431789	chr5	 55832696	 55832755	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005123	0.9165132	A	0.9137812	A	1.00189547223799	0	lncRNA	TCONS_00012543	NA	NA	NA	NA	XLOC_005377	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005377), lincRNA [TCONS_00012543]"	chr6:89853289-89853348	hs|6q15	Agilent_HUMAN_G3V2	TCONS_00012543	TCONS_00012543	chr6	 89853289	 89853348	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002593	3.7772248	P	4.035137	P	0.836297294015768	0	lncRNA	TCONS_00004778	NA	NA	NA	NA	XLOC_001455	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001455), lincRNA [TCONS_00004778]"	chr2:46667349-46667408	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00004778	TCONS_00004778	chr2	 46667349	 46667408	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009258	0.91902685	A	2.0126672	A	0.468577520747226	0	lncRNA	TCONS_00025436	NA	NA	NA	NA	XLOC_012255	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012255), lincRNA [TCONS_00025436]"	chr17:53716095-53716154	hs|17q22	Agilent_HUMAN_G3V2	TCONS_00025436	TCONS_00025436	chr17	 53716095	 53716154	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007359	2.331902	A	2.2438498	A	1.06293413304621	0	lncRNA	TCONS_00019652	NA	NA	NA	NA	XLOC_009457	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009457), lincRNA [TCONS_00019652]"	chr11:62178709-62178650	hs|11q12.3	Agilent_HUMAN_G3V2	TCONS_00019652	TCONS_00019652	chr11	 62178650	 62178709	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014292	2.3001418	A	1.8887322	A	1.3299846546305	0	lncRNA	XR_109187	XR_109187	XR_109187	NA	NA	LOC100506059	uncharacterized LOC100506059	NA	THC2673830	NA	"PREDICTED: Homo sapiens hypothetical LOC100506059 (LOC100506059), miscRNA [XR_109187]"	chr15:48944085-48944144	hs|15q21.1	Agilent_HUMAN_G3V2	XR_109187	XR_109187	chr15	 48944085	 48944144	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011560	4.717788	P	5.367843	P	0.637256019024832	0	lncRNA	TCONS_l2_00011008	NA	NA	NA	NA	XLOC_l2_005921	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005921), lincRNA [TCONS_l2_00011008]"	chr17:77801461-77801520	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_l2_00011008	TCONS_l2_00011008	chr17	 77801461	 77801520	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012515	0.9521575	A	0.90702057	A	1.03178110372615	0	lncRNA	ENST00000467313	NA	BC036236	NA	Hs.606987	XLOC_l2_010014	NA	ENST00000467313	THC2606871	NA	"BROAD Institute lincRNA (XLOC_l2_010014), lincRNA [TCONS_l2_00019996]"	chr3:181690985-181691044	hs|3q26.33	Agilent_HUMAN_G3V2	ENST00000467313	ENST00000467313	chr3	181690985	181691044	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012691	3.2381768	P	4.163962	P	0.526393945269848	0	lncRNA	TCONS_l2_00021347	NA	NA	NA	NA	XLOC_l2_011309	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011309), lincRNA [TCONS_l2_00021347]"	chr4:150273170-150273111	hs|4q31.23	Agilent_HUMAN_G3V2	TCONS_l2_00021347	TCONS_l2_00021347	chr4	150273111	150273170	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009118	5.602578	P	5.61294	P	0.992843340643918	0	lncRNA	TCONS_00024916	NA	NA	NA	NA	XLOC_011835	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011835), lincRNA [TCONS_00024916]"	chr16:89752381-89752440	hs|16q24.3	Agilent_HUMAN_G3V2	TCONS_00024916	TCONS_00024916	chr16	 89752381	 89752440	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009434	0.9762011	A	0.9168706	A	1.04198210428824	0	lncRNA	TCONS_00026225	NA	NA	NA	NA	XLOC_012600	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012600), lincRNA [TCONS_00026225]"	chr18:137457-137516	hs|18p11.32	Agilent_HUMAN_G3V2	TCONS_00026225	TCONS_00026225	chr18	   137457	   137516	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008941	0.9822288	A	1.0366721	A	0.962965955940731	0	lncRNA	TCONS_00024408	NA	NA	NA	NA	XLOC_011723	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011723), lincRNA [TCONS_00024408]"	chr16:52114275-52114334	hs|16q12.1	Agilent_HUMAN_G3V2	TCONS_00024408	TCONS_00024408	chr16	 52114275	 52114334	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006165	3.7611473	P	3.9711452	P	0.864538489737024	0	lncRNA	TCONS_00016037	NA	NA	NA	NA	XLOC_007432	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007432), lincRNA [TCONS_00016037]"	chr9:88069288-88069347	hs|9q21.33	Agilent_HUMAN_G3V2	TCONS_00016037	TCONS_00016037	chr9	 88069288	 88069347	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004294	1.7861506	A	1.6741172	A	1.08075042232794	0	lncRNA	TCONS_00010087	NA	NA	NA	NA	XLOC_004546	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004546), lincRNA [TCONS_00010087]"	chr5:130363946-130364005	hs|5q23.3	Agilent_HUMAN_G3V2	TCONS_00010087	TCONS_00010087	chr5	130363946	130364005	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004430	0.91696024	A	1.4680607	A	0.682499332425737	0	lncRNA	TCONS_00010438	NA	NA	NA	NA	XLOC_004954	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004954), lincRNA [TCONS_00010438]"	chr5:110405441-110382262	hs|5q22.1	Agilent_HUMAN_G3V2	TCONS_00010438	TCONS_00010438	chr5	110382262	110405441	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007157	0.91681844	A	0.9150538	A	1.00122390360016	0	lncRNA	ENST00000428160	NA	NA	NA	NA	XLOC_009364	NA	ENST00000428160	NA	NA	"BROAD Institute lincRNA (XLOC_009364), lincRNA [TCONS_00019166]"	chr11:5127354-5127295	hs|11p15.4	Agilent_HUMAN_G3V2	ENST00000428160	ENST00000428160	chr11	  5127295	  5127354	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007822	1.3152013	A	0.9129089	A	1.32160623669285	0	lncRNA	TCONS_00021064	NA	NA	NA	NA	XLOC_009662	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009662), lincRNA [TCONS_00021064]"	chr12:10727472-10727531	hs|12p13.2	Agilent_HUMAN_G3V2	TCONS_00021064	TCONS_00021064	chr12	 10727472	 10727531	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008075	0.9165614	A	0.909746	A	1.00473525132996	0	lncRNA	TCONS_00021815	NA	NA	NA	NA	XLOC_010416	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010416), lincRNA [TCONS_00021815]"	chr13:66570020-66570079	hs|13q21.32	Agilent_HUMAN_G3V2	TCONS_00021815	TCONS_00021815	chr13	 66570020	 66570079	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00318280	2.8706698	A	3.0070078	P	0.909825641748804	0	lncRNA	XR_108813	XR_108813	XR_108813	NA	NA	LOC100506860	NA	NA	THC2580295	NA	"PREDICTED: Homo sapiens hypothetical LOC100506860, transcript variant 1 (LOC100506860), miscRNA [XR_108813]"	chr7:130598325-130598384	hs|7q32.3	Agilent_HUMAN_G3V2	XR_108813	XR_108813	chr7	130598325	130598384	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003180	5.544523	P	5.9891877	P	0.734755062873726	0	lncRNA	TCONS_00006668	NA	NA	NA	NA	XLOC_003264	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003264), lincRNA [TCONS_00006668]"	chr3:135551465-135551406	hs|3q22.2	Agilent_HUMAN_G3V2	TCONS_00006668	TCONS_00006668	chr3	135551406	135551465	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004370	0.92317283	A	0.9030378	A	1.01405438644195	0	lncRNA	TCONS_00010288	NA	NA	NA	NA	XLOC_004764	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004764), lincRNA [TCONS_00010288]"	chr5:29141896-29141837	hs|5p13.3	Agilent_HUMAN_G3V2	TCONS_00010288	TCONS_00010288	chr5	 29141837	 29141896	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004317	0.92589974	A	1.4296063	A	0.705292420093084	0	lncRNA	TCONS_00010145	NA	NA	NA	NA	XLOC_004612	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004612), lincRNA [TCONS_00010145]"	chr5:154498187-154498998	hs|5q33.2	Agilent_HUMAN_G3V2	TCONS_00010145	TCONS_00010145	chr5	154498187	154498998	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00319981	6.9456153	P	7.9412403	P	0.501518560825944	0	lncRNA	ENST00000436710	XR_108951	XR_108951	NA	NA	LOC100506119	NA	ENST00000436710	THC2610745	NA	"PREDICTED: Homo sapiens hypothetical LOC100506119, transcript variant 1 (LOC100506119), miscRNA [XR_108951]"	chr9:132104123-132104182	hs|9q34.11	Agilent_HUMAN_G3V2	ENST00000436710	ENST00000436710	chr9	132104123	132104182	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002993	0.972582	A	0.9100145	A	1.04432264246181	0	lncRNA	TCONS_00006121	NA	NA	NA	NA	XLOC_002725	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002725), lincRNA [TCONS_00006121]"	chr3:86768820-86768879	hs|3p12.1	Agilent_HUMAN_G3V2	TCONS_00006121	TCONS_00006121	chr3	 86768820	 86768879	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010318	2.8736615	A	2.9165173	A	0.970731491303349	0	lncRNA	TCONS_00029256	NA	NA	NA	NA	XLOC_014002	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014002), lincRNA [TCONS_00029256]"	chr21:16115611-16115552	hs|21q11.2	Agilent_HUMAN_G3V2	TCONS_00029256	TCONS_00029256	chr21	 16115552	 16115611	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012852	0.98612183	A	0.91531056	A	1.05030713629366	0	lncRNA	THC2668185	NA	NA	NA	NA	XLOC_l2_011798	NA	NA	THC2668185	NA	"BROAD Institute lincRNA (XLOC_l2_011798), lincRNA [TCONS_l2_00022558]"	chr5:142142709-142142768	hs|5q31.3	Agilent_HUMAN_G3V2	THC2668185	THC2668185	chr5	142142709	142142768	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014912	1.0245348	A	1.7887082	A	0.588790622786145	0	lncRNA	XR_133002	XR_133002	XR_133002	NA	NA	LOC100653221	uncharacterized LOC100653221	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100653221, transcript variant 2 (LOC100653221), miscRNA [XR_133002]"	chr12:53170494-53207438	hs|12q13.13	Agilent_HUMAN_G3V2	XR_133002	XR_133002	chr12	 53170494	 53207438	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008498	4.5136414	P	4.7868423	P	0.827481578540293	0	lncRNA	TCONS_00022895	NA	NA	NA	NA	XLOC_011149	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011149), lincRNA [TCONS_00022895]"	chr14:105121822-105111662	hs|14q32.33	Agilent_HUMAN_G3V2	TCONS_00022895	TCONS_00022895	chr14	105111662	105121822	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002206	5.1005564	P	5.1326747	P	0.977983276204057	0	lncRNA	TCONS_00003662	NA	NA	NA	NA	XLOC_001449	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001449), lincRNA [TCONS_00003662]"	chr2:43415560-43433742	hs|2p21	Agilent_HUMAN_G3V2	TCONS_00003662	TCONS_00003662	chr2	 43415560	 43433742	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011652	3.3077738	P	1.3579013	A	3.86340386740564	0	lncRNA	TCONS_l2_00011954	NA	NA	NA	NA	XLOC_l2_006398	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006398), lincRNA [TCONS_l2_00011954]"	chr18:10712629-10712570	hs|18p11.22	Agilent_HUMAN_G3V2	TCONS_l2_00011954	TCONS_l2_00011954	chr18	 10712570	 10712629	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3235282	7.235565	P	7.4021893	P	0.890924880955188	0	lncRNA	XR_110095	XR_110095	XR_110095	   401561	Hs.609301	LOC401561	FP7915 protein	NA	NP924771	NA	"PREDICTED: Homo sapiens FP7915 protein (LOC401561), miscRNA [XR_110095]"	chr9:139511203-139511144	hs|9q34.3	Agilent_HUMAN_G3V2	XR_110095	XR_110095	chr9	139511144	139511203	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43923_PI429285431	5.5667467	P	3.392858	P	4.51238041851652	0	lncRNA	48636-1_{1..3000}	"gi|254039637|ref|NR_028063.1| Homo sapiens GRIP and coiled-coil domain containing 2 (GCC2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|254039637|ref|NR_028063.1| Homo sapiens GRIP and coiled-coil domain containing 2 (GCC2), transcript variant 2, non-coding RNA"	NA	NA	NA	NA	NA	NR_028063.1	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009900	2.3356535	A	2.2018864	A	1.09715480521696	0	lncRNA	ENST00000433587	NA	NA	NA	NA	XLOC_013729	NA	ENST00000433587	NA	NA	"BROAD Institute lincRNA (XLOC_013729), lincRNA [TCONS_00028041]"	chr20:34674233-34674174	hs|20q11.23	Agilent_HUMAN_G3V2	ENST00000433587	ENST00000433587	chr20	 34674174	 34674233	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41902_PI429285431	5.5545483	P	6.3055573	P	0.594187845780234	0	lncRNA	43626-1_{1..60}	ENST00000581972 ncrna:miRNA chromosome:GRCh37:5:38557604:38557663:-1 gene:ENSG00000265304 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581972 ncrna:miRNA chromosome:GRCh37:5:38557604:38557663:-1 gene:ENSG00000265304 gene_biotype:miRNA transcript_biotype:miRNA	chr5	 38557604	 38557663	-	ENSG00000265304	ENST00000581972	NA	NA	LIFR	NA	chr5:38547604-38567663	inner
LNCA_21_P0003685	0.9859892	A	0.9166424	A	1.04924151755029	0	lncRNA	TCONS_00008342	NA	NA	NA	NA	XLOC_003791	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003791), lincRNA [TCONS_00008342]"	chr4:177372028-177372087	hs|4q34.2	Agilent_HUMAN_G3V2	TCONS_00008342	TCONS_00008342	chr4	177372028	177372087	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006900	3.766482	P	4.193997	P	0.743541411266644	0	lncRNA	TCONS_00018295	NA	NA	NA	NA	XLOC_008575	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008575), lincRNA [TCONS_00018295]"	chr10:99600667-99600726	hs|10q24.2	Agilent_HUMAN_G3V2	TCONS_00018295	TCONS_00018295	chr10	 99600667	 99600726	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007021	0.97159505	A	1.0304004	A	0.960058784487004	0	lncRNA	TCONS_00018613	NA	NA	NA	NA	XLOC_008959	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008959), lincRNA [TCONS_00018613]"	chr10:118916257-118916198	hs|10q25.3	Agilent_HUMAN_G3V2	TCONS_00018613	TCONS_00018613	chr10	118916198	118916257	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010674	2.5176733	A	1.5427858	A	1.96548792421807	0	lncRNA	TCONS_l2_00001808	NA	NA	NA	NA	XLOC_l2_001332	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001332), lincRNA [TCONS_l2_00001808]"	chr1:224161715-224149948	hs|1q42.11	Agilent_HUMAN_G3V2	TCONS_l2_00001808	TCONS_l2_00001808	chr1	224149948	224161715	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43354_PI429285431	5.085984	P	5.1783743	P	0.937967408836805	0	lncRNA	48172-2_{3001..3450}	"gi|310118483|ref|XR_108282.1| PREDICTED: Homo sapiens uncharacterized LOC284600 (LOC284600), misc_RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"lncipedia2.1,NONCODERv3,ncbi,"	">gi|310118483|ref|XR_108282.1| PREDICTED: Homo sapiens uncharacterized LOC284600 (LOC284600), misc_RNA"	Chr1	   849815	   850264	+	284600	XR_108282.2	NA	NA	NA	"hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-79.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-50.30;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.30;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-53.90;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-77.40;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-60.50;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-75.80;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.50;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0,hg19_refFlat_TMEM67:range=chr8:94770776-948286805'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.60;hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0,hg19_refFlat_NUDT7:range=chr16:77756480-777755495'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.20"	NA	inter
LNCA_21_P0005003	6.2458267	P	6.6419787	P	0.759882364014754	0	lncRNA	TCONS_00012088	NA	NA	NA	NA	XLOC_005619	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005619), lincRNA [TCONS_00012088]"	chr6:15161352-15161293	hs|6p23	Agilent_HUMAN_G3V2	TCONS_00012088	TCONS_00012088	chr6	 15161293	 15161352	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3356517	6.937931	P	7.0158978	P	0.947391872190981	0	lncRNA	XR_132698	XR_132698	XR_132698	100652764	NA	LOC100652764	uncharacterized LOC100652764	ENST00000435388	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652764 (LOC100652764), miscRNA [XR_132698]"	chr1:11162096-11162155	hs|1p36.22	Agilent_HUMAN_G3V2	XR_132698	XR_132698	chr1	 11162096	 11162155	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014094	5.9433537	P	5.485801	P	1.37321041076465	0	lncRNA	XR_108415	XR_108415	XR_108415	NA	Hs.151184	LOC100288092	uncharacterized LOC100288092	NA	THC2537358	NA	"PREDICTED: Homo sapiens hypothetical LOC100288092 (LOC100288092), miscRNA [XR_108415]"	chr2:200325918-200325977	hs|2q33.1	Agilent_HUMAN_G3V2	XR_108415	XR_108415	chr2	200325918	200325977	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00812715	4.7178855	P	5.253464	P	0.689881988454623	0	lncRNA	TCONS_l2_00019181	NA	NA	NA	NA	XLOC_l2_010118	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010118), lincRNA [TCONS_l2_00019181]"	chr3:14396700-14396641	hs|3p25.1	Agilent_HUMAN_G3V2	TCONS_l2_00019181	TCONS_l2_00019181	chr3	 14396641	 14396700	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014326	0.94265985	A	0.9062854	A	1.02553337947261	0	lncRNA	XR_109297	XR_109297	XR_109297	NA	NA	LOC100505574	uncharacterized LOC100505574	NA	THC2676731	NA	"PREDICTED: Homo sapiens hypothetical LOC100505574 (LOC100505574), miscRNA [XR_109297]"	chr16:51183316-51183375	hs|16q12.1	Agilent_HUMAN_G3V2	XR_109297	XR_109297	chr16	 51183316	 51183375	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002727	5.8401895	P	5.8755674	P	0.975776132186111	0	lncRNA	ENST00000425799	NA	NA	NA	NA	XLOC_002593	NA	ENST00000425799	NA	NA	"BROAD Institute lincRNA (XLOC_002593), lincRNA [TCONS_00005496]"	chr3:18948263-18959166	hs|3p24.3	Agilent_HUMAN_G3V2	ENST00000425799	ENST00000425799	chr3	 18948263	 18959166	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00801735	13.843513	P	14.362566	P	0.697829745557991	0	lncRNA	TCONS_l2_00026509	NA	NA	NA	NA	XLOC_l2_013783	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013783), lincRNA [TCONS_l2_00026509]"	chr7:35792332-35792273	hs|7p14.2	Agilent_HUMAN_G3V2	TCONS_l2_00026509	TCONS_l2_00026509	chr7	 35792273	 35792332	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31490_PI429285431	1.7525492	A	0.9182895	A	1.7829419108576	0	lncRNA	33254-1_{1..2070}	n337970|AK055341|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|356|NULL|-1.2371400|-0.3050196	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337970|AK055341|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|356|NULL|-1.2371400|-0.3050196	chr1	 57460451	 57462520	-	NA	NA	NA	NA	DAB1	NA	chr1:57463579-57472521	inter
LNCA_21_P0003697	0.9214634	A	0.90404844	A	1.01214428055703	0	lncRNA	TCONS_00008374	NA	NA	NA	NA	XLOC_003829	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003829), lincRNA [TCONS_00008374]"	chr4:188553973-188581334	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008374	TCONS_00008374	chr4	188553973	188581334	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00320611	6.9019685	P	6.8455167	P	1.03990504490353	0	lncRNA	XR_132651	XR_132651	XR_132651	NA	NA	LOC100506694	uncharacterized LOC100506694	NA	THC2516977	NA	"PREDICTED: Homo sapiens hypothetical LOC100506694, transcript variant 4 (LOC100506694), miscRNA [XR_132651]"	chr19:28284505-28284564	hs|19q11	Agilent_HUMAN_G3V2	XR_132651	XR_132651	chr19	 28284505	 28284564	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010291	0.95580626	A	0.9075962	A	1.03398127554356	0	lncRNA	TCONS_00029162	NA	NA	NA	NA	XLOC_014106	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014106), lincRNA [TCONS_00029162]"	chr21:44873503-44873444	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029162	TCONS_00029162	chr21	 44873444	 44873503	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010032	6.1254725	P	6.593574	P	0.722915285184499	0	lncRNA	ENST00000432067	XR_110793	XR_110793	NA	Hs.98121	XLOC_013717	NA	ENST00000432067	THC2610705	NA	"PREDICTED: Homo sapiens hypothetical LOC100507284 (LOC100507284), miscRNA [XR_110793]"	chr20:29565883-29565824	hs|20q11.21	Agilent_HUMAN_G3V2	ENST00000432067	ENST00000432067	chr20	 29565824	 29565883	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_42483_PI429285431	5.4236445	P	5.6411433	P	0.860055222148775	0	lncRNA	45243-1_{1..154}	ENST00000364287 ncrna:snoRNA chromosome:GRCh37:8:18837129:18837282:1 gene:ENSG00000201157 gene_biotype:snoRNA transcript_biotype:snoRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000364287 ncrna:snoRNA chromosome:GRCh37:8:18837129:18837282:1 gene:ENSG00000201157 gene_biotype:snoRNA transcript_biotype:snoRNA	chr8	 18837129	 18837282	+	ENSG00000201157	ENST00000364287	NA	NA	PSD3	NA	chr8:18827129-18847282	inner
LNCA_21_P0007174	5.065951	P	4.9214063	P	1.10538175093939	0	lncRNA	TCONS_00019235	NA	NA	NA	NA	XLOC_009065	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009065), lincRNA [TCONS_00019235]"	chr11:10928230-10928289	hs|11p15.3	Agilent_HUMAN_G3V2	TCONS_00019235	TCONS_00019235	chr11	 10928230	 10928289	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005526	5.6869025	P	6.3621497	P	0.626224908996098	0	lncRNA	TCONS_00013943	NA	NA	NA	NA	XLOC_006588	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006588), lincRNA [TCONS_00013943]"	chr7:123316053-123315994	hs|7q31.32	Agilent_HUMAN_G3V2	TCONS_00013943	TCONS_00013943	chr7	123315994	123316053	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002036	9.053527	P	8.942882	P	1.07971084566483	0	lncRNA	ENST00000428036	XR_109967	XR_109967	NA	Hs.595909	XLOC_002035	NA	ENST00000428036	THC2630543	NA	"PREDICTED: Homo sapiens hypothetical LOC100505774 (LOC100505774), miscRNA [XR_109967]"	chr2:28932261-28932202	hs|2p23.2	Agilent_HUMAN_G3V2	ENST00000428036	ENST00000428036	chr2	 28932202	 28932261	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007002	1.0077217	A	1.0529705	A	0.969122672454597	0	lncRNA	TCONS_00018527	NA	NA	NA	NA	XLOC_008833	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008833), lincRNA [TCONS_00018527]"	chr10:63579889-63579830	hs|10q21.2	Agilent_HUMAN_G3V2	TCONS_00018527	TCONS_00018527	chr10	 63579830	 63579889	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_51980_PI429285431	0.92897964	A	0.9389614	A	0.993105051189369	0	lncRNA	55518-2_{3001..5141}	hg19_lincRNAsTranscripts_TCONS_l2_00016363 range=chr20:58658544-58676498 5'pad=0 3'pad=0 strand=+ repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00016363 range=chr20:58658544-58676498 5'pad=0 3'pad=0 strand=+ repeatMasking=none	chr20	 58661544	 58663684	+	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0005541	5.264109	P	5.2910056	P	0.981529408937592	0	lncRNA	TCONS_00014004	NA	NA	NA	NA	XLOC_006644	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006644), lincRNA [TCONS_00014004]"	chr7:149917442-149917383	hs|7q36.1	Agilent_HUMAN_G3V2	TCONS_00014004	TCONS_00014004	chr7	149917383	149917442	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011159	0.9189541	A	1.9279443	A	0.4968939219719	0	lncRNA	TCONS_l2_00006991	NA	NA	NA	NA	XLOC_l2_003843	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003843), lincRNA [TCONS_l2_00006991]"	chr13:106416703-106416762	hs|13q33.2	Agilent_HUMAN_G3V2	TCONS_l2_00006991	TCONS_l2_00006991	chr13	106416703	106416762	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003739	0.9222809	A	1.5171416	A	0.662108382252581	0	lncRNA	TCONS_00008465	NA	NA	NA	NA	XLOC_003926	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003926), lincRNA [TCONS_00008465]"	chr4:38281318-38278223	hs|4p14	Agilent_HUMAN_G3V2	TCONS_00008465	TCONS_00008465	chr4	 38278223	 38281318	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010754	3.3120055	P	3.3618765	P	0.966022702935943	0	lncRNA	ENST00000434606	NA	NA	NA	NA	XLOC_l2_000773	NA	ENST00000434606	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000773), lincRNA [TCONS_l2_00002430]"	chr1:13164267-13164208	hs|1p36.21	Agilent_HUMAN_G3V2	ENST00000434606	ENST00000434606	chr1	 13164208	 13164267	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007833	2.151075	A	1.4780287	A	1.59443612204318	0	lncRNA	XR_110350	XR_110350	XR_110350	NA	Hs.711526	MUC19	"mucin 19, oligomeric"	ENST00000424466	THC2768053	GO:0005576	"PREDICTED: Homo sapiens mucin 19, oligomeric (MUC19), miscRNA [XR_110350]"	chr12:40930744-40931222	hs|12q12	Agilent_HUMAN_G3V2	XR_110350	XR_110350	chr12	 40930744	 40931222	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002124	3.8518867	P	2.9530375	A	1.8645780646914	0	lncRNA	ENST00000457756	NA	NA	NA	NA	XLOC_002411	NA	ENST00000457756	NA	NA	"BROAD Institute lincRNA (XLOC_002411), lincRNA [TCONS_00003455]"	chr2:177710863-177710804	hs|2q31.1	Agilent_HUMAN_G3V2	ENST00000457756	ENST00000457756	chr2	177710804	177710863	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011640	4.70443	P	4.8748155	P	0.888605206808748	0	lncRNA	BC034720	NA	BC034720	NA	Hs.385535	XLOC_l2_006037	NA	NA	THC2614332	NA	"BROAD Institute lincRNA (XLOC_l2_006037), lincRNA [TCONS_l2_00011637]"	chr17:26256670-26256611	hs|17q11.2	Agilent_HUMAN_G3V2	BC034720	BC034720	chr17	 26256611	 26256670	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_46767_PI429285431	5.796647	P	5.8892465	P	0.937831407429525	0	lncRNA	50917-1_{1..642}	"gi|343962625|ref|NR_045024.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 27, non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|343962625|ref|NR_045024.1| Homo sapiens C17orf76 antisense RNA 1 (C17orf76-AS1), transcript variant 27, non-coding RNA"	Chr17	 16342301	 16342942	+	125144	NR_045024.1	NA	NA	NA	NA	NA	inter
LNCA_21_P0002000	2.3508058	A	2.4114203	A	0.95885561838515	0	lncRNA	ENST00000453678	NA	NA	NA	NA	XLOC_001958	NA	ENST00000453678	NA	NA	"BROAD Institute lincRNA (XLOC_001958), lincRNA [TCONS_00003171]"	chr2:5758518-5758459	hs|2p25.2	Agilent_HUMAN_G3V2	ENST00000453678	ENST00000453678	chr2	  5758459	  5758518	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_41745_PI429285431	0.92691684	A	0.9830565	A	0.961834339846883	0	lncRNA	43285-1_{1..66}	ENST00000581957 ncrna:miRNA chromosome:GRCh37:2:178120673:178120738:-1 gene:ENSG00000265396 gene_biotype:miRNA transcript_biotype:miRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000581957 ncrna:miRNA chromosome:GRCh37:2:178120673:178120738:-1 gene:ENSG00000265396 gene_biotype:miRNA transcript_biotype:miRNA	chr2	178120673	178120738	-	ENSG00000265396	ENST00000581957	NA	NA	NFE2L2	NA	chr2:178110673-178129859	inner
LNCA_21_P0002281	0.9192539	A	3.2886894	P	0.193521330713257	0	lncRNA	TCONS_00003837	NA	NA	NA	NA	XLOC_001643	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001643), lincRNA [TCONS_00003837]"	chr2:121491662-121491721	hs|2q14.2	Agilent_HUMAN_G3V2	TCONS_00003837	TCONS_00003837	chr2	121491662	121491721	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006155	0.92228734	A	0.9043244	A	1.01252879714173	0	lncRNA	TCONS_00016016	NA	NA	NA	NA	XLOC_007407	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007407), lincRNA [TCONS_00016016]"	chr9:76550868-76550927	hs|9q21.13	Agilent_HUMAN_G3V2	TCONS_00016016	TCONS_00016016	chr9	 76550868	 76550927	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00322941	4.547429	P	4.430561	P	1.08437818865773	0	lncRNA	BX640700	NA	BX640700	NA	NA	XLOC_004598	NA	NA	THC2514370	NA	"BROAD Institute lincRNA (XLOC_004598), lincRNA [TCONS_00009262]"	chr5:148793395-148793454	hs|5q32	Agilent_HUMAN_G3V2	BX640700	BX640700	chr5	148793395	148793454	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002582	2.4263186	A	3.2820706	P	0.552577222537429	0	lncRNA	TCONS_00003614	NA	NA	NA	NA	XLOC_001406	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001406), lincRNA [TCONS_00003614]"	chr2:27961895-27961954	hs|2p23.2	Agilent_HUMAN_G3V2	TCONS_00003614	TCONS_00003614	chr2	 27961895	 27961954	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00320173	2.728767	A	2.0407922	A	1.61102044165995	0	lncRNA	ENST00000382488	NA	AK127863	NA	Hs.518622	XLOC_l2_010565	NA	ENST00000382488	THC2485730	NA	"BROAD Institute lincRNA (XLOC_l2_010565), lincRNA [TCONS_l2_00020399]"	chr4:8512653-8512712	hs|4p16.1	Agilent_HUMAN_G3V2	ENST00000382488	ENST00000382488	chr4	  8512653	  8512712	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_52074_PI429285431	2.2728572	A	2.4437544	A	0.888290089168619	0	lncRNA	55603-1_{1..609}	hg19_lincRNAsTranscripts_TCONS_l2_00017855 range=chr22:16223460-16231556 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00017855 range=chr22:16223460-16231556 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr22	 16223460	 16224068	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0014238	2.845021	A	1.7539166	A	2.13037056454957	0	lncRNA	XR_108983	XR_108983	XR_108983	NA	NA	LOC100507364	uncharacterized LOC100507364	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100507364 (LOC100507364), miscRNA [XR_108983]"	chr9:99276752-99276693	hs|9q22.32	Agilent_HUMAN_G3V2	XR_108983	XR_108983	chr9	 99276693	 99276752	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004118	0.9559999	A	0.90772134	A	1.03403037074169	0	lncRNA	ENST00000507876	NA	NA	NA	NA	XLOC_004765	NA	ENST00000507876	THC2749048	NA	"BROAD Institute lincRNA (XLOC_004765), lincRNA [TCONS_00009627]"	chr5:29384443-29383368	hs|5p13.3	Agilent_HUMAN_G3V2	ENST00000507876	ENST00000507876	chr5	 29383368	 29384443	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009093	10.282634	P	10.375676	P	0.937543802114403	0	lncRNA	THC2672781	NA	NA	NA	NA	XLOC_011645	NA	NA	THC2672781	NA	"BROAD Institute lincRNA (XLOC_011645), lincRNA [TCONS_00024807]"	chr16:011318439-011318498	hs|16p13.13	Agilent_HUMAN_G3V2	THC2672781	THC2672781	chr16	 11318439	 11318498	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004186	3.9567087	P	4.50021	P	0.686103770513821	0	lncRNA	ENST00000511419	NA	NA	NA	NA	XLOC_005056	NA	ENST00000511419	NA	NA	"BROAD Institute lincRNA (XLOC_005056), lincRNA [TCONS_00009803]"	chr5:152265049-152264990	hs|5q33.1	Agilent_HUMAN_G3V2	ENST00000511419	ENST00000511419	chr5	152264990	152265049	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_31131_PI429285431	0.93055606	A	0.9194591	A	1.00772148462739	0	lncRNA	32926-1_{1..254}	n337453|DQ993527|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394694|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394694|-1.4142100|-0.3895228	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n337453|DQ993527|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000394694|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000394694|-1.4142100|-0.3895228	chr2	166983432	166983685	-	NA	NA	NA	NA	SCN1A	NA	chr2:166973432-166993686	inner
LNCA_21_P0012088	3.334251	P	1.5327674	A	3.48578502872868	0	lncRNA	ENST00000449075	XR_109881	XR_109881	NA	NA	XLOC_l2_008226	NA	ENST00000449075	THC2665394	NA	"PREDICTED: Homo sapiens hypothetical LOC100506797, transcript variant 1 (LOC100506797), miscRNA [XR_109881]"	chr2:118943813-118942914	hs|2q14.2	Agilent_HUMAN_G3V2	ENST00000449075	ENST00000449075	chr2	118942914	118943813	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_22436_PI429285431	2.5040984	A	2.527061	A	0.984209536060321	0	lncRNA	24024-1_{1..522}	lnc-NPTX1-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,"	>lnc-NPTX1-2:1	chr17	 78388729	 78389250	-	lnc-NPTX1-2	lnc-NPTX1-2:1	ENSG00000263069.1	CTD-2047H16.4	ENDOV	NA	chr17:78388967-78398968	inter
LNCA_21_P0008832	4.699912	P	4.9622693	P	0.833724536795058	0	lncRNA	TCONS_00023977	NA	NA	NA	NA	XLOC_011305	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011305), lincRNA [TCONS_00023977]"	chr15:74060795-74061150	hs|15q24.1	Agilent_HUMAN_G3V2	TCONS_00023977	TCONS_00023977	chr15	 74060795	 74061150	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32794_PI429285431	1.0005879	A	0.91680104	A	1.05979620030634	0	lncRNA	34429-1_{1..2087}	n339439|AK057475|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1871|NULL|-0.6437260|-0.1991172	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n339439|AK057475|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1871|NULL|-0.6437260|-0.1991172	chr21	 19301407	 19303493	-	NA	NA	NA	NA	NA	NA	NA	inner
LNCA_21_P0011985	1.0111796	A	1.0566934	A	0.968944676470878	0	lncRNA	TCONS_l2_00015067	NA	NA	NA	NA	XLOC_l2_008405	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008405), lincRNA [TCONS_l2_00015067]"	chr2:200758943-200758884	hs|2q33.1	Agilent_HUMAN_G3V2	TCONS_l2_00015067	TCONS_l2_00015067	chr2	200758884	200758943	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003081	0.99874806	A	1.0478956	A	0.96650725027652	0	lncRNA	TCONS_00006354	NA	NA	NA	NA	XLOC_002975	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002975), lincRNA [TCONS_00006354]"	chr3:193796223-193799191	hs|3q29	Agilent_HUMAN_G3V2	TCONS_00006354	TCONS_00006354	chr3	193796223	193799191	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005433	1.3017607	A	2.516903	A	0.430730592715957	0	lncRNA	TCONS_00013599	NA	NA	NA	NA	XLOC_006253	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006253), lincRNA [TCONS_00013599]"	chr7:130618528-130618587	hs|7q32.3	Agilent_HUMAN_G3V2	TCONS_00013599	TCONS_00013599	chr7	130618528	130618587	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003566	6.238528	P	6.6139426	P	0.770883845177986	0	lncRNA	TCONS_00007972	NA	NA	NA	NA	XLOC_003441	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003441), lincRNA [TCONS_00007972]"	chr4:6765272-6765331	hs|4p16.1	Agilent_HUMAN_G3V2	TCONS_00007972	TCONS_00007972	chr4	  6765272	  6765331	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009119	4.8008795	P	4.119003	P	1.60422499926858	0	lncRNA	BC035173	NA	BC035173	NA	NA	XLOC_011837	NA	NA	THC2493316	NA	"BROAD Institute lincRNA (XLOC_011837), lincRNA [TCONS_00024918]"	chr16:89884557-89884616	hs|16q24.3	Agilent_HUMAN_G3V2	BC035173	BC035173	chr16	 89884557	 89884616	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010247	0.96904814	A	0.9092467	A	1.04232229479184	0	lncRNA	TCONS_00029021	NA	NA	NA	NA	XLOC_013943	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013943), lincRNA [TCONS_00029021]"	chr21:40742863-40742922	hs|21q22.2	Agilent_HUMAN_G3V2	TCONS_00029021	TCONS_00029021	chr21	 40742863	 40742922	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010288	3.5901258	P	3.435663	P	1.11300710321982	0	lncRNA	TCONS_00029157	NA	NA	NA	NA	XLOC_014102	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014102), lincRNA [TCONS_00029157]"	chr21:44777883-44777824	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029157	TCONS_00029157	chr21	 44777824	 44777883	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009937	0.98519105	A	1.0406047	A	0.962318487267141	0	lncRNA	TCONS_00028111	NA	NA	NA	NA	XLOC_013465	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013465), lincRNA [TCONS_00028111]"	chr20:12951738-12951797	hs|20p12.1	Agilent_HUMAN_G3V2	TCONS_00028111	TCONS_00028111	chr20	 12951738	 12951797	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011639	4.3121495	P	4.769228	P	0.728459918870416	0	lncRNA	ENST00000435518	NA	NA	NA	NA	XLOC_l2_006027	NA	ENST00000435518	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006027), lincRNA [TCONS_l2_00011635]"	chr17:20747761-20747702	hs|17p11.2	Agilent_HUMAN_G3V2	ENST00000435518	ENST00000435518	chr17	 20747702	 20747761	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013066	0.9247507	A	0.9646633	A	0.972713873668387	0	lncRNA	THC2760105	NA	NA	NA	NA	XLOC_l2_012911	NA	NA	THC2760105	NA	"BROAD Institute lincRNA (XLOC_l2_012911), lincRNA [TCONS_l2_00024648]"	chr6:024797678-024797619	hs|6p22.3	Agilent_HUMAN_G3V2	THC2760105	THC2760105	chr6	 24797619	 24797678	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009902	0.91783494	A	0.9151417	A	1.00186855529036	0	lncRNA	ENST00000412348	NA	NA	NA	NA	XLOC_013745	NA	ENST00000412348	NA	NA	"BROAD Institute lincRNA (XLOC_013745), lincRNA [TCONS_00028046]"	chr20:40642774-40642715	hs|20q12	Agilent_HUMAN_G3V2	ENST00000412348	ENST00000412348	chr20	 40642715	 40642774	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011167	0.91779417	A	1.8305213	A	0.531180050648575	0	lncRNA	TCONS_l2_00007043	NA	NA	NA	NA	XLOC_l2_003877	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003877), lincRNA [TCONS_l2_00007043]"	chr13:114966545-114966604	hs|13q34	Agilent_HUMAN_G3V2	TCONS_l2_00007043	TCONS_l2_00007043	chr13	114966545	114966604	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008211	0.9182082	A	0.9097066	A	1.00591025712617	0	lncRNA	TCONS_00022104	NA	NA	NA	NA	XLOC_010715	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010715), lincRNA [TCONS_00022104]"	chr13:107124341-107124282	hs|13q33.3	Agilent_HUMAN_G3V2	TCONS_00022104	TCONS_00022104	chr13	107124282	107124341	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012839	1.7351117	A	3.168772	P	0.370190480065507	0	lncRNA	TCONS_l2_00022450	NA	NA	NA	NA	XLOC_l2_011692	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011692), lincRNA [TCONS_l2_00022450]"	chr5:98297219-98297278	hs|5q21.1	Agilent_HUMAN_G3V2	TCONS_l2_00022450	TCONS_l2_00022450	chr5	 98297219	 98297278	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012941	0.9214823	A	0.905411	A	1.01120205463154	0	lncRNA	TCONS_l2_00023390	NA	NA	NA	NA	XLOC_l2_011579	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_011579), lincRNA [TCONS_l2_00023390]"	chr5:50265056-50265115	hs|5q11.1	Agilent_HUMAN_G3V2	TCONS_l2_00023390	TCONS_l2_00023390	chr5	 50265056	 50265115	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010733	0.9218649	A	0.9052721	A	1.01156764623531	0	lncRNA	ENST00000451341	NA	NA	NA	NA	XLOC_l2_000514	NA	ENST00000451341	THC2735571	NA	"BROAD Institute lincRNA (XLOC_l2_000514), lincRNA [TCONS_l2_00002247]"	chr1:177335349-177335408	hs|1q25.2	Agilent_HUMAN_G3V2	ENST00000451341	ENST00000451341	chr1	177335349	177335408	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006543	0.92225724	A	0.9050933	A	1.01196818904204	0	lncRNA	TCONS_00017357	NA	NA	NA	NA	XLOC_008200	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008200), lincRNA [TCONS_00017357]"	chrX:102786051-102785992	hs|Xq22.2	Agilent_HUMAN_G3V2	TCONS_00017357	TCONS_00017357	chrX	102785992	102786051	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_11760_PI429285431	9.884749	P	9.957377	P	0.950904260999132	0	lncRNA	13340-1_{1..588}	lnc-KDM4C-2:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,UCSC,"	>lnc-KDM4C-2:1	chr9	  6707542	  6708129	+	lnc-KDM4C-2	lnc-KDM4C-2:1	XLOC_007275	linc-KDM4C-1	KDM4C	NA	chr9:6697542-6717763	inter
LNCA_21_P0001450	0.9661942	A	0.908954	A	1.04047348464491	0	lncRNA	THC2649492	NA	NA	NA	NA	XLOC_000643	NA	NA	THC2649492	NA	"BROAD Institute lincRNA (XLOC_000643), lincRNA [TCONS_00001355]"	chr1:246955731-246955790	hs|1q44	Agilent_HUMAN_G3V2	THC2649492	THC2649492	chr1	246955731	246955790	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3217283	0.9968558	A	0.91536736	A	1.05810913726861	0	lncRNA	XR_109295	XR_109295	XR_109295	100505488	Hs.558864	LOC100505488	uncharacterized LOC100505488	NA	THC2560255	NA	"PREDICTED: Homo sapiens hypothetical LOC100505488, transcript variant 1 (LOC100505488), miscRNA [XR_109295]"	chr16:50134489-50134430	hs|16q12.1	Agilent_HUMAN_G3V2	XR_109295	XR_109295	chr16	 50134430	 50134489	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_29801_PI429285431	3.9791665	P	2.0629873	A	3.77422177800735	0	lncRNA	31564-1_{1..1013}	n333510|BC035907|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000094165|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000094165|2.9122700|-0.1755334	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n333510|BC035907|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000094165|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000094165|2.9122700|-0.1755334	chrX	 55514447	 55515459	-	NA	NA	NA	NA	USP51	NA	chrX:55511049-55515631	inner
LNCA_21_P0012547	2.933009	A	3.2020266	P	0.829884461443715	0	lncRNA	ENST00000484092	NA	NA	NA	NA	XLOC_l2_010319	NA	ENST00000484092	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010319), lincRNA [TCONS_l2_00020176]"	chr3:117391067-117391008	hs|3q13.32	Agilent_HUMAN_G3V2	ENST00000484092	ENST00000484092	chr3	117391008	117391067	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005009	0.92711174	A	1.7613308	A	0.560886568321886	0	lncRNA	TCONS_00012104	NA	NA	NA	NA	XLOC_005633	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005633), lincRNA [TCONS_00012104]"	chr6:19729424-19729365	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00012104	TCONS_00012104	chr6	 19729365	 19729424	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004311	0.9255866	A	2.951079	A	0.245621303384589	0	lncRNA	TCONS_00010124	NA	NA	NA	NA	XLOC_004590	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004590), lincRNA [TCONS_00010124]"	chr5:142092408-142120740	hs|5q31.3	Agilent_HUMAN_G3V2	TCONS_00010124	TCONS_00010124	chr5	142092408	142120740	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009581	3.2096539	P	3.675222	P	0.724185853453835	0	lncRNA	THC2697570	NA	NA	NA	NA	XLOC_012884	NA	NA	THC2697570	NA	"BROAD Institute lincRNA (XLOC_012884), lincRNA [TCONS_00026565]"	chr18:072824380-072824321	hs|18q22.3	Agilent_HUMAN_G3V2	THC2697570	THC2697570	chr18	 72824321	 72824380	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005917	2.6065927	A	2.6458426	A	0.973160791097614	0	lncRNA	XR_133508	XR_133508	XR_133508	NA	NA	LOC100507316	uncharacterized LOC100507316	ENST00000517411	THC2504565	NA	"PREDICTED: Homo sapiens hypothetical LOC100507316, transcript variant 2 (LOC100507316), miscRNA [XR_133508]"	chr8:144362416-144362357	hs|8q24.3	Agilent_HUMAN_G3V2	XR_133508	XR_133508	chr8	144362357	144362416	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_30559_PI429285431	11.433616	P	11.50242	P	0.953428066221097	0	lncRNA	32340-1_{1..308}	n335751|X05827|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321150|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321150|-0.7809990|-0.1733302	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n335751|X05827|mRNAlikelncRNA|Homosapiens|NULL|H-invitationalv7.5|HIT000321150|http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000321150|-0.7809990|-0.1733302	chr14	 94854897	 94855204	-	NA	NA	NA	NA	SERPINA1	NA	chr14:94844897-94857029	inner
LNCA_21_P0010619	3.8663821	P	3.8628452	P	1.00245459987254	0	lncRNA	TCONS_l2_00001273	NA	NA	NA	NA	XLOC_l2_000941	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000941), lincRNA [TCONS_l2_00001273]"	chr1:65445507-65445370	hs|1p31.3	Agilent_HUMAN_G3V2	TCONS_l2_00001273	TCONS_l2_00001273	chr1	 65445370	 65445507	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009168	9.606371	P	9.901102	P	0.815224322180916	0	lncRNA	ENST00000478824	XR_109398	XR_109398	NA	Hs.599877	XLOC_012227	NA	ENST00000478824	THC2656978	NA	"PREDICTED: Homo sapiens hypothetical LOC100506373 (LOC100506373), miscRNA [XR_109398]"	chr17:46784473-46784532	hs|17q21.32	Agilent_HUMAN_G3V2	ENST00000478824	ENST00000478824	chr17	 46784473	 46784532	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004498	1.0226634	A	1.0614349	A	0.973483546293993	0	lncRNA	TCONS_00010658	NA	NA	NA	NA	XLOC_004325	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004325), lincRNA [TCONS_00010658]"	chr5:29169673-29177037	hs|5p13.3	Agilent_HUMAN_G3V2	TCONS_00010658	TCONS_00010658	chr5	 29169673	 29177037	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009587	3.2689831	P	3.2111127	P	1.04092808496277	0	lncRNA	THC2519365	NA	NA	NA	NA	XLOC_012893	NA	NA	THC2519365	NA	"BROAD Institute lincRNA (XLOC_012893), lincRNA [TCONS_00026575]"	chr18:074334787-074334728	hs|18q23	Agilent_HUMAN_G3V2	THC2519365	THC2519365	chr18	 74334728	 74334787	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011366	1.000791	A	1.0501361	A	0.966374907616535	0	lncRNA	TCONS_l2_00008986	NA	NA	NA	NA	XLOC_l2_004867	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004867), lincRNA [TCONS_l2_00008986]"	chr15:32808512-32808453	hs|15q13.3	Agilent_HUMAN_G3V2	TCONS_l2_00008986	TCONS_l2_00008986	chr15	 32808453	 32808512	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48695_PI429285431	3.9088275	P	2.9854193	A	1.89659048073898	0	lncRNA	52536-1_{1..1087}	hg19_lincRNAsTranscripts_TCONS_l2_00014786 range=chr2:111954016-111966489 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014786 range=chr2:111954016-111966489 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	111954016	111955102	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_33_P3679936	0.91990304	A	1.0882028	A	0.889890814487508	0	lncRNA	XR_109153	XR_109153	XR_109153	   283483	Hs.651365	LOC283483	uncharacterized LOC283483	NA	NP1153966	NA	"PREDICTED: Homo sapiens hypothetical LOC283483 (LOC283483), miscRNA [XR_109153]"	chr13:107283384-107283443	hs|13q33.3	Agilent_HUMAN_G3V2	XR_109153	XR_109153	chr13	107283384	107283443	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010006	0.9186416	A	2.2023056	A	0.410751002099149	0	lncRNA	TCONS_00028321	NA	NA	NA	NA	XLOC_013660	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013660), lincRNA [TCONS_00028321]"	chr20:16089841-16089782	hs|20p12.1	Agilent_HUMAN_G3V2	TCONS_00028321	TCONS_00028321	chr20	 16089782	 16089841	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00806450	3.8144455	P	3.9071138	P	0.937786684698436	0	lncRNA	TCONS_l2_00006027	NA	NA	NA	NA	XLOC_l2_003234	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003234), lincRNA [TCONS_l2_00006027]"	chr12:132911034-132911093	hs|12q24.33	Agilent_HUMAN_G3V2	TCONS_l2_00006027	TCONS_l2_00006027	chr12	132911034	132911093	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005182	0.9226583	A	1.5120839	A	0.664607463680541	0	lncRNA	TCONS_00012825	NA	NA	NA	NA	XLOC_005918	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005918), lincRNA [TCONS_00012825]"	chr6:166315424-166315365	hs|6q27	Agilent_HUMAN_G3V2	TCONS_00012825	TCONS_00012825	chr6	166315365	166315424	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003202	0.9281342	A	0.90543675	A	1.01585708355885	0	lncRNA	TCONS_00006734	NA	NA	NA	NA	XLOC_003372	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003372), lincRNA [TCONS_00006734]"	chr3:190506506-190506447	hs|3q28	Agilent_HUMAN_G3V2	TCONS_00006734	TCONS_00006734	chr3	190506447	190506506	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014100	2.2096362	A	2.7614965	A	0.682139967670044	0	lncRNA	ENST00000429882	XR_108431	XR_108431	NA	Hs.671324	LOC100507611	NA	ENST00000429882	THC2661099	NA	"PREDICTED: Homo sapiens hypothetical LOC100507611 (LOC100507611), miscRNA [XR_108431]"	chr2:220347027-220346968	hs|2q35	Agilent_HUMAN_G3V2	ENST00000429882	ENST00000429882	chr2	220346968	220347027	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007443	1.0014411	A	0.918849	A	1.05891889920117	0	lncRNA	THC2663443	NA	NA	NA	NA	XLOC_009231	NA	NA	THC2663443	NA	"BROAD Institute lincRNA (XLOC_009231), lincRNA [TCONS_00019958]"	chr11:081682288-081682347	hs|11q14.1	Agilent_HUMAN_G3V2	THC2663443	THC2663443	chr11	 81682288	 81682347	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005430	1.0264747	A	1.0600022	A	0.977028465156401	0	lncRNA	TCONS_00013590	NA	NA	NA	NA	XLOC_006249	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006249), lincRNA [TCONS_00013590]"	chr7:130082968-130083027	hs|7q32.2	Agilent_HUMAN_G3V2	TCONS_00013590	TCONS_00013590	chr7	130082968	130083027	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003044	1.0246778	A	1.0614723	A	0.974818475848003	0	lncRNA	TCONS_00006276	NA	NA	NA	NA	XLOC_002878	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002878), lincRNA [TCONS_00006276]"	chr3:152394923-152394982	hs|3q25.2	Agilent_HUMAN_G3V2	TCONS_00006276	TCONS_00006276	chr3	152394923	152394982	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014084	1.0200092	A	1.0617492	A	0.971482558669464	0	lncRNA	ENST00000244820	XR_108383	XR_108383	NA	Hs.652810	LOC93463	NA	ENST00000244820	NP161074	NA	"PREDICTED: Homo sapiens hypothetical LOC93463 (LOC93463), miscRNA [XR_108383]"	chr2:237964694-237964315	hs|2q37.3	Agilent_HUMAN_G3V2	ENST00000244820	ENST00000244820	chr2	237964315	237964694	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007328	0.96628314	A	1.0289502	A	0.957492399370612	0	lncRNA	TCONS_00019593	NA	NA	NA	NA	XLOC_009395	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009395), lincRNA [TCONS_00019593]"	chr11:23826059-23826000	hs|11p14.3	Agilent_HUMAN_G3V2	TCONS_00019593	TCONS_00019593	chr11	 23826000	 23826059	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009100	0.9257328	A	0.97325987	A	0.967593464537675	0	lncRNA	TCONS_00024846	NA	NA	NA	NA	XLOC_011726	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011726), lincRNA [TCONS_00024846]"	chr16:52644745-52644804	hs|16q12.2	Agilent_HUMAN_G3V2	TCONS_00024846	TCONS_00024846	chr16	 52644745	 52644804	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008997	0.92043996	A	0.9265959	A	0.995742118137903	0	lncRNA	TCONS_00024512	NA	NA	NA	NA	XLOC_011828	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011828), lincRNA [TCONS_00024512]"	chr16:88278844-88278903	hs|16q24.2	Agilent_HUMAN_G3V2	TCONS_00024512	TCONS_00024512	chr16	 88278844	 88278903	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00315914	9.872913	P	9.285276	P	1.50278331153628	0	lncRNA	TCONS_00016491	NA	NA	NA	NA	XLOC_007868	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007868), lincRNA [TCONS_00016491]"	chr9:132265817-132265758	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_00016491	TCONS_00016491	chr9	132265758	132265817	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011644	0.9195231	A	0.9083468	A	1.0077769050862	0	lncRNA	AK310037	NA	AK310037	NA	NA	LINC00483	long intergenic non-protein coding RNA 483	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006131), lincRNA [TCONS_l2_00011675]"	chr17:48840634-48840575	hs|17q21.33	Agilent_HUMAN_G3V2	AK310037	AK310037	chr17	 48840575	 48840634	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011247	0.92188334	A	0.90613186	A	1.01097791384761	0	lncRNA	TCONS_l2_00007750	NA	NA	NA	NA	XLOC_l2_004208	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_004208), lincRNA [TCONS_l2_00007750]"	chr14:60530919-60530978	hs|14q23.1	Agilent_HUMAN_G3V2	TCONS_l2_00007750	TCONS_l2_00007750	chr14	 60530919	 60530978	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008576	7.614297	P	7.6659317	P	0.964842458198127	0	lncRNA	AK091906	NA	AK091906	NA	Hs.638512	XLOC_011476	NA	NA	THC2523693	NA	"BROAD Institute lincRNA (XLOC_011476), lincRNA [TCONS_00023277]"	chr15:51133062-51133003	hs|15q21.2	Agilent_HUMAN_G3V2	AK091906	AK091906	chr15	 51133003	 51133062	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003635	2.246054	A	0.9248773	A	2.49869827089826	0	lncRNA	TCONS_00008192	NA	NA	NA	NA	XLOC_003640	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003640), lincRNA [TCONS_00008192]"	chr4:109591863-109591922	hs|4q25	Agilent_HUMAN_G3V2	TCONS_00008192	TCONS_00008192	chr4	109591863	109591922	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3282688	5.3070865	P	5.513809	P	0.866503510885897	0	lncRNA	XR_110587	XR_110587	XR_110587	100130027	Hs.639618	LOC100130027	uncharacterized LOC100130027	NA	NP1135811	NA	"PREDICTED: Homo sapiens hypothetical LOC100130027 (LOC100130027), miscRNA [XR_110587]"	chr8:146032346-146032287	hs|8q24.3	Agilent_HUMAN_G3V2	XR_110587	XR_110587	chr8	146032287	146032346	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008254	7.234977	P	7.5904255	P	0.781626615999956	0	lncRNA	TCONS_00022273	NA	NA	NA	NA	XLOC_010595	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010595), lincRNA [TCONS_00022273]"	chr13:46688185-46688126	hs|13q14.13	Agilent_HUMAN_G3V2	TCONS_00022273	TCONS_00022273	chr13	 46688126	 46688185	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014488	6.8555026	P	9.051186	M	0.218289796310114	0	lncRNA	XR_110057	XR_110057	XR_110057	NA	NA	LOC100506387	uncharacterized LOC100506387	NA	THC2657213	NA	"PREDICTED: Homo sapiens hypothetical LOC100506387, transcript variant 1 (LOC100506387), miscRNA [XR_110057]"	chr4:53815025-53815084	hs|4q12	Agilent_HUMAN_G3V2	XR_110057	XR_110057	chr4	 53815025	 53815084	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009743	4.3131495	P	4.921789	P	0.655814861363132	0	lncRNA	TCONS_00027223	NA	NA	NA	NA	XLOC_013263	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013263), lincRNA [TCONS_00027223]"	chr19:21744920-21744861	hs|19p12	Agilent_HUMAN_G3V2	TCONS_00027223	TCONS_00027223	chr19	 21744861	 21744920	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008646	0.918345	A	0.9146379	A	1.00257287007703	0	lncRNA	TCONS_00023444	NA	NA	NA	NA	XLOC_011289	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011289), lincRNA [TCONS_00023444]"	chr15:66152622-66152681	hs|15q22.31	Agilent_HUMAN_G3V2	TCONS_00023444	TCONS_00023444	chr15	 66152622	 66152681	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007187	0.92058533	A	0.9073778	A	1.00919679518644	0	lncRNA	TCONS_00019257	NA	NA	NA	NA	XLOC_009087	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009087), lincRNA [TCONS_00019257]"	chr11:22141361-22141420	hs|11p14.3	Agilent_HUMAN_G3V2	TCONS_00019257	TCONS_00019257	chr11	 22141361	 22141420	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006224	2.4455829	A	2.3321085	A	1.08183044224845	0	lncRNA	TCONS_00016151	NA	NA	NA	NA	XLOC_007557	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007557), lincRNA [TCONS_00016151]"	chr9:126763491-126763550	hs|9q33.3	Agilent_HUMAN_G3V2	TCONS_00016151	TCONS_00016151	chr9	126763491	126763550	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_44355_PI429285431	2.078927	A	2.37705	A	0.813309854733934	0	lncRNA	48976-1_{1..3000}	"gi|112734776|ref|NR_003132.1| Homo sapiens heat shock protein 90kDa alpha (cytosolic), class B member 2, pseudogene (HSP90AB2P), non-coding RNA"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ncbi	"NONCODERv3,ncbi,"	">gi|112734776|ref|NR_003132.1| Homo sapiens heat shock protein 90kDa alpha (cytosolic), class B member 2, pseudogene (HSP90AB2P), non-coding RNA"	NA	NA	NA	NA	NA	NR_003132.1	NA	NA	NA	NA	NA	Unknown
LNCA_24_P659122	15.074816	P	15.943312	P	0.547717545009722	0	lncRNA	XR_132464	XR_132464	XR_132464	   401357	Hs.457696	LOC401357	uncharacterized LOC401357	NA	THC2481823	NA	"PREDICTED: Homo sapiens hypothetical LOC401357 (LOC401357), miscRNA [XR_132464]"	chr7:56879058-56878999	hs|7p11.2	Agilent_HUMAN_G3V2	XR_132464	XR_132464	chr7	 56878999	 56879058	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_3720_PI429285431	1.0630523	A	0.90843135	A	1.11312911911134	0	lncRNA	3689-1_{1..781}	"transcript_id ""ENST00000601888.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,ensembl.GRCh37.72,"	">transcript_id ""ENST00000601888.1"" | genecode_v17"	chr10	 67375491	 67376271	+	ENSG00000228065.5	ENST00000601888.1	RP11-222A11.1	RP11-222A11.1-010	NA	NA	NA	inter
LNCA_21_P0008542	2.0971417	A	2.6405356	A	0.686154848729057	0	lncRNA	TCONS_00023126	NA	NA	NA	NA	XLOC_011064	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011064), lincRNA [TCONS_00023126]"	chr14:71777777-71777718	hs|14q24.2	Agilent_HUMAN_G3V2	TCONS_00023126	TCONS_00023126	chr14	 71777718	 71777777	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006933	6.408287	P	6.482919	P	0.9495843082813	0	lncRNA	THC2772165	NA	NA	NA	NA	XLOC_008659	NA	NA	THC2772165	NA	"BROAD Institute lincRNA (XLOC_008659), lincRNA [TCONS_00018380]"	chr10:126922521-126922580	hs|10q26.13	Agilent_HUMAN_G3V2	THC2772165	THC2772165	chr10	126922521	126922580	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003710	6.3652196	P	6.2945185	P	1.05022693367571	0	lncRNA	TCONS_00008408	NA	NA	NA	NA	XLOC_003853	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003853), lincRNA [TCONS_00008408]"	chr4:1581895-1576009	hs|4p16.3	Agilent_HUMAN_G3V2	TCONS_00008408	TCONS_00008408	chr4	  1576009	  1581895	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001715	7.4151907	P	7.780242	P	0.776441265461969	0	lncRNA	TCONS_00002266	NA	NA	NA	NA	XLOC_000630	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000630), lincRNA [TCONS_00002266]"	chr1:236261015-236261074	hs|1q42.3	Agilent_HUMAN_G3V2	TCONS_00002266	TCONS_00002266	chr1	236261015	236261074	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010383	0.9875093	A	1.3059225	A	0.801951447814314	0	lncRNA	ENST00000442579	NA	NA	NA	NA	XLOC_014364	NA	ENST00000442579	THC2758501	NA	"BROAD Institute lincRNA (XLOC_014364), lincRNA [TCONS_00029480]"	chr22:36850858-36841624	hs|22q12.3	Agilent_HUMAN_G3V2	ENST00000442579	ENST00000442579	chr22	 36841624	 36850858	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002693	5.021102	P	5.6756277	P	0.635284312826473	0	lncRNA	TCONS_00004629	NA	NA	NA	NA	XLOC_002543	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002543), lincRNA [TCONS_00004629]"	chr2:241320922-241320863	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_00004629	TCONS_00004629	chr2	241320863	241320922	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007733	1.0280854	A	1.0600164	A	0.978110252559779	0	lncRNA	TCONS_00020860	NA	NA	NA	NA	XLOC_010143	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010143), lincRNA [TCONS_00020860]"	chr12:88006473-88006414	hs|12q21.32	Agilent_HUMAN_G3V2	TCONS_00020860	TCONS_00020860	chr12	 88006414	 88006473	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005867	1.3020542	A	1.0505903	A	1.19041441368963	0	lncRNA	TCONS_00015070	NA	NA	NA	NA	XLOC_007146	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007146), lincRNA [TCONS_00015070]"	chr8:89600691-89600632	hs|8q21.3	Agilent_HUMAN_G3V2	TCONS_00015070	TCONS_00015070	chr8	 89600632	 89600691	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_16202_PI429285431	3.0658584	A	2.8726053	A	1.14333890011081	0	lncRNA	17908-1_{1..293}	lnc-CYorf15A.1-1:1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-CYorf15A.1-1:1	chrY	 21442235	 21442527	+	lnc-CYorf15A.1-1	lnc-CYorf15A.1-1:1	XLOC_008298	linc-CYorf15A	NA	NA	NA	inter
LNCA_23_P42684	3.5960224	P	3.736325	P	0.907328826459811	0	lncRNA	XR_108766	XR_108766	XR_108766	    55025	Hs.272195	FLJ20712	uncharacterized FLJ20712	ENST00000311067	THC2485240	NA	"PREDICTED: Homo sapiens hypothetical FLJ20712 (FLJ20712), miscRNA [XR_108766]"	chr7:33767896-33767955	hs|7p14.3	Agilent_HUMAN_G3V2	XR_108766	XR_108766	chr7	 33767896	 33767955	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004095	0.9198513	A	0.9237132	A	0.997326714512013	0	lncRNA	ENST00000507950	NA	NA	NA	NA	XLOC_004719	NA	ENST00000507950	THC2680239	NA	"BROAD Institute lincRNA (XLOC_004719), lincRNA [TCONS_00009593]"	chr5:5069413-5069354	hs|5p15.32	Agilent_HUMAN_G3V2	ENST00000507950	ENST00000507950	chr5	  5069354	  5069413	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005767	4.644684	P	5.1911607	P	0.684690215027981	0	lncRNA	TCONS_00014866	NA	NA	NA	NA	XLOC_006935	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006935), lincRNA [TCONS_00014866]"	chr8:135854999-135855058	hs|8q24.22	Agilent_HUMAN_G3V2	TCONS_00014866	TCONS_00014866	chr8	135854999	135855058	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008974	2.3505087	A	1.5513576	A	1.74007694203022	0	lncRNA	THC2674875	NA	NA	NA	NA	XLOC_011795	NA	NA	THC2674875	NA	"BROAD Institute lincRNA (XLOC_011795), lincRNA [TCONS_00024474]"	chr16:079550111-079550170	hs|16q23.2	Agilent_HUMAN_G3V2	THC2674875	THC2674875	chr16	 79550111	 79550170	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002340	1.6651101	A	1.9932637	A	0.796555284595192	0	lncRNA	TCONS_00003999	NA	NA	NA	NA	XLOC_001823	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001823), lincRNA [TCONS_00003999]"	chr2:207791254-207791313	hs|2q33.3	Agilent_HUMAN_G3V2	TCONS_00003999	TCONS_00003999	chr2	207791254	207791313	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006565	6.7665863	P	6.708509	P	1.04107737740407	0	lncRNA	TCONS_00017435	NA	NA	NA	NA	XLOC_008029	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008029), lincRNA [TCONS_00017435]"	chrX:100919174-100926042	hs|Xq22.1	Agilent_HUMAN_G3V2	TCONS_00017435	TCONS_00017435	chrX	100919174	100926042	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010249	0.94539326	A	0.9075906	A	1.02654911891254	0	lncRNA	TCONS_00029024	NA	NA	NA	NA	XLOC_013947	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013947), lincRNA [TCONS_00029024]"	chr21:42954136-42954195	hs|21q22.3	Agilent_HUMAN_G3V2	TCONS_00029024	TCONS_00029024	chr21	 42954136	 42954195	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006185	5.671729	P	5.888324	P	0.860594186670298	0	lncRNA	THC2774953	NA	NA	NA	NA	XLOC_007475	NA	NA	THC2774953	NA	"BROAD Institute lincRNA (XLOC_007475), lincRNA [TCONS_00016085]"	chr9:098538686-098538745	hs|9q22.32	Agilent_HUMAN_G3V2	THC2774953	THC2774953	chr9	 98538686	 98538745	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011549	7.4056044	P	7.4156733	P	0.993045068616308	0	lncRNA	TCONS_l2_00010936	NA	NA	NA	NA	XLOC_l2_005871	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005871), lincRNA [TCONS_l2_00010936]"	chr17:66132518-66132577	hs|17q24.2	Agilent_HUMAN_G3V2	TCONS_l2_00010936	TCONS_l2_00010936	chr17	 66132518	 66132577	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008579	0.9921214	A	1.1900238	A	0.871817216992335	0	lncRNA	BC033162	NA	BC033162	NA	Hs.297340	XLOC_011513	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011513), lincRNA [TCONS_00023281]"	chr15:68126724-68126665	hs|15q23	Agilent_HUMAN_G3V2	BC033162	BC033162	chr15	 68126665	 68126724	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004952	1.0019977	A	0.9158076	A	1.06156307901288	0	lncRNA	TCONS_00011979	NA	NA	NA	NA	XLOC_005489	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005489), lincRNA [TCONS_00011979]"	chr6:143839056-143839115	hs|6q24.2	Agilent_HUMAN_G3V2	TCONS_00011979	TCONS_00011979	chr6	143839056	143839115	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37284_PI429285431	1.4614642	A	1.2358887	A	1.16924357405882	0	lncRNA	38393-1_{1..999}	n345726|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1275|NULL|-1.3029600|-0.2193904	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345726|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1275|NULL|-1.3029600|-0.2193904	chr8	124191203	124192201	+	NA	NA	NA	NA	FAM83A	NA	chr8:124194752-124203090	inter
LNCA_21_P0009307	1.9642673	A	0.9174409	A	2.06598016029369	0	lncRNA	TCONS_00025600	NA	NA	NA	NA	XLOC_012428	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012428), lincRNA [TCONS_00025600]"	chr17:26577758-26577699	hs|17q11.2	Agilent_HUMAN_G3V2	TCONS_00025600	TCONS_00025600	chr17	 26577699	 26577758	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005554	2.7034914	A	1.0622735	A	3.11929046242644	0	lncRNA	TCONS_00014104	NA	NA	NA	NA	XLOC_006043	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006043), lincRNA [TCONS_00014104]"	chr7:35759355-35759414	hs|7p14.2	Agilent_HUMAN_G3V2	TCONS_00014104	TCONS_00014104	chr7	 35759355	 35759414	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010510	8.041615	P	7.971128	P	1.05007108861039	0	lncRNA	AK130173	NA	AK130173	NA	Hs.307652	LOC100133612	uncharacterized LOC100133612	NA	THC2529876	NA	"BROAD Institute lincRNA (XLOC_l2_000037), lincRNA [TCONS_l2_00000066]"	chr1:3832721-3832780	hs|1p36.32	Agilent_HUMAN_G3V2	AK130173	AK130173	chr1	  3832721	  3832780	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009927	0.92651606	A	0.98054326	A	0.963243733233712	0	lncRNA	TCONS_00028092	NA	NA	NA	NA	XLOC_013437	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013437), lincRNA [TCONS_00028092]"	chr20:2187190-2187249	hs|20p13	Agilent_HUMAN_G3V2	TCONS_00028092	TCONS_00028092	chr20	  2187190	  2187249	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011830	0.9206205	A	0.92644835	A	0.995968590242185	0	lncRNA	TCONS_l2_00013850	NA	NA	NA	NA	XLOC_l2_007452	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007452), lincRNA [TCONS_l2_00013850]"	chr2:101225824-101225883	hs|2q11.2	Agilent_HUMAN_G3V2	TCONS_l2_00013850	TCONS_l2_00013850	chr2	101225824	101225883	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009847	0.92032886	A	1.7387748	A	0.5670524383027	0	lncRNA	XR_109618	XR_109618	XR_109618	NA	NA	LOC100506034	uncharacterized LOC100506034	ENST00000425385	THC2658323	NA	"PREDICTED: Homo sapiens hypothetical LOC100506034 (LOC100506034), miscRNA [XR_109618]"	chr20:46612998-46613055	hs|20q13.13	Agilent_HUMAN_G3V2	XR_109618	XR_109618	chr20	 46612998	 46613055	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002157	0.9238288	A	0.9064682	A	1.01210614420459	0	lncRNA	TCONS_00003537	NA	NA	NA	NA	XLOC_001310	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001310), lincRNA [TCONS_00003537]"	chr2:693583-693642	hs|2p25.3	Agilent_HUMAN_G3V2	TCONS_00003537	TCONS_00003537	chr2	   693583	   693642	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007974	0.9592223	A	0.90876365	A	1.03559409925823	0	lncRNA	ENST00000413124	NA	AK057351	NA	Hs.148951	XLOC_010530	NA	ENST00000413124	THC2525382	NA	"BROAD Institute lincRNA (XLOC_010530), lincRNA [TCONS_00021937]"	chr13:22447240-22447181	hs|13q12.11	Agilent_HUMAN_G3V2	ENST00000413124	ENST00000413124	chr13	 22447181	 22447240	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007101	0.9664514	A	0.9094265	A	1.04031822159873	0	lncRNA	ENST00000438454	NA	NA	NA	NA	XLOC_008792	NA	ENST00000438454	THC2688861	NA	"BROAD Institute lincRNA (XLOC_008792), lincRNA [TCONS_00018927]"	chr10:44396931-44396872	hs|10q11.21	Agilent_HUMAN_G3V2	ENST00000438454	ENST00000438454	chr10	 44396872	 44396931	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009594	1.0185297	A	1.0638819	A	0.969053216547023	0	lncRNA	TCONS_00026744	NA	NA	NA	NA	XLOC_012900	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012900), lincRNA [TCONS_00026744]"	chr18:76736824-76736765	hs|18q23	Agilent_HUMAN_G3V2	TCONS_00026744	TCONS_00026744	chr18	 76736765	 76736824	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008960	2.94186	A	2.568285	A	1.29555925358367	0	lncRNA	THC2655745	NA	NA	NA	NA	XLOC_011758	NA	NA	THC2655745	NA	"BROAD Institute lincRNA (XLOC_011758), lincRNA [TCONS_00024438]"	chr16:066929196-066929255	hs|16q22.1	Agilent_HUMAN_G3V2	THC2655745	THC2655745	chr16	 66929196	 66929255	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_12458_PI429285431	4.719162	P	5.448601	P	0.603138401977478	0	lncRNA	14070-1_{1..481}	lnc-AC092327.1-2:10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,UCSC,"	>lnc-AC092327.1-2:10	chr16	 86256540	 86257020	-	lnc-AC092327.1-2	lnc-AC092327.1-2:10	XLOC_012044	linc-COX4NB-7	NA	NA	NA	inter
LNCA_21_P0012988	0.92494595	A	2.335031	A	0.37628950311699	0	lncRNA	ENST00000511794	NA	NA	NA	NA	XLOC_l2_012054	NA	ENST00000511794	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012054), lincRNA [TCONS_l2_00023749]"	chr5:60497197-60497138	hs|5q12.1	Agilent_HUMAN_G3V2	ENST00000511794	ENST00000511794	chr5	 60497138	 60497197	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010959	6.7366443	P	6.3626237	P	1.29595947008867	0	lncRNA	TCONS_l2_00004338	NA	NA	NA	NA	XLOC_l2_002194	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_002194), lincRNA [TCONS_l2_00004338]"	chr11:1825315-1825736	hs|11p15.5	Agilent_HUMAN_G3V2	TCONS_l2_00004338	TCONS_l2_00004338	chr11	  1825315	  1825736	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_7383_PI429285431	0.9260941	A	1.0915179	A	0.891666548746101	0	lncRNA	9029-1_{1..902}	lnc-DYRK2-4:2	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	lncipedia2.1	"lncipedia2.1,NONCODERv3,"	>lnc-DYRK2-4:2	chr12	 68413642	 68414543	+	lnc-DYRK2-4	lnc-DYRK2-4:2	ENSG00000255733	GS1-410F4.2	NA	NA	NA	inter
LNCA_21_P0002634	2.662719	A	2.4462042	A	1.16192326956111	0	lncRNA	TCONS_00005041	NA	NA	NA	NA	XLOC_001916	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001916), lincRNA [TCONS_00005041]"	chr2:239468031-239468090	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_00005041	TCONS_00005041	chr2	239468031	239468090	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001055	0.9267553	A	1.5428352	A	0.652441339037687	0	lncRNA	ENST00000452024	NA	NA	NA	NA	XLOC_000549	NA	ENST00000452024	NA	NA	"BROAD Institute lincRNA (XLOC_000549), lincRNA [TCONS_00000380]"	chr1:211809552-211809611	hs|1q32.3	Agilent_HUMAN_G3V2	ENST00000452024	ENST00000452024	chr1	211809552	211809611	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014574	1.1293743	A	0.9064051	A	1.16713318450414	0	lncRNA	XR_110350	XR_110350	XR_110350	NA	Hs.711526	MUC19	"mucin 19, oligomeric"	ENST00000424466	THC2768053	GO:0005576	"PREDICTED: Homo sapiens mucin 19, oligomeric (MUC19), miscRNA [XR_110350]"	chr12:40932596-40933336	hs|12q12	Agilent_HUMAN_G3V2	XR_110350	XR_110350	chr12	 40932596	 40933336	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008831	0.929527	A	0.90674925	A	1.01591362745186	0	lncRNA	TCONS_00023976	NA	NA	NA	NA	XLOC_011305	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011305), lincRNA [TCONS_00023976]"	chr15:74062168-74062227	hs|15q24.1	Agilent_HUMAN_G3V2	TCONS_00023976	TCONS_00023976	chr15	 74062168	 74062227	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014898	3.447558	P	4.16774	P	0.607020859993924	0	lncRNA	XR_132888	XR_132888	XR_132888	NA	NA	LOC100652951	uncharacterized LOC100652951	NA	THC2577566	NA	"PREDICTED: Homo sapiens hypothetical LOC100652951 (LOC100652951), miscRNA [XR_132888]"	chr8:29940900-29940959	hs|8p12	Agilent_HUMAN_G3V2	XR_132888	XR_132888	chr8	 29940900	 29940959	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003603	9.526629	P	9.710214	P	0.880512261842775	0	lncRNA	TCONS_00008049	NA	NA	NA	NA	XLOC_003514	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003514), lincRNA [TCONS_00008049]"	chr4:38754521-38754580	hs|4p14	Agilent_HUMAN_G3V2	TCONS_00008049	TCONS_00008049	chr4	 38754521	 38754580	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006118	0.92005754	A	0.9103874	A	1.00672534451842	0	lncRNA	TCONS_00016529	NA	NA	NA	NA	XLOC_007263	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007263), lincRNA [TCONS_00016529]"	chr9:1299352-1299411	hs|9p24.3	Agilent_HUMAN_G3V2	TCONS_00016529	TCONS_00016529	chr9	  1299352	  1299411	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002052	0.94481874	A	0.9079583	A	1.0258789015049	0	lncRNA	TCONS_00003286	NA	NA	NA	NA	XLOC_002099	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002099), lincRNA [TCONS_00003286]"	chr2:55852214-55852155	hs|2p16.1	Agilent_HUMAN_G3V2	TCONS_00003286	TCONS_00003286	chr2	 55852155	 55852214	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014068	0.95893884	A	0.90899855	A	1.03522207737164	0	lncRNA	XR_108334	XR_108334	XR_108334	NA	NA	LOC100506823	uncharacterized LOC100506823	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100506823 (LOC100506823), miscRNA [XR_108334]"	chr1:204239851-204239910	hs|1q32.1	Agilent_HUMAN_G3V2	XR_108334	XR_108334	chr1	204239851	204239910	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013434	5.5687604	P	5.6419845	P	0.950511442748305	0	lncRNA	ENST00000438894	NA	NA	NA	NA	XLOC_l2_013873	NA	ENST00000438894	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013873), lincRNA [TCONS_l2_00027389]"	chr7:65847741-65847408	hs|7q11.21	Agilent_HUMAN_G3V2	ENST00000438894	ENST00000438894	chr7	 65847408	 65847741	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005412	1.0004876	A	1.0527635	A	0.964413733133419	0	lncRNA	TCONS_00013557	NA	NA	NA	NA	XLOC_006197	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006197), lincRNA [TCONS_00013557]"	chr7:106151931-106151990	hs|7q22.3	Agilent_HUMAN_G3V2	TCONS_00013557	TCONS_00013557	chr7	106151931	106151990	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010800	7.408576	P	7.3168573	P	1.0656389350773	0	lncRNA	ENST00000435531	NA	NA	NA	NA	XLOC_l2_001421	NA	ENST00000435531	THC2725508	NA	"BROAD Institute lincRNA (XLOC_l2_001421), lincRNA [TCONS_l2_00003862]"	chr10:988524-988583	hs|10p15.3	Agilent_HUMAN_G3V2	ENST00000435531	ENST00000435531	chr10	   988524	   988583	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001407	5.2801995	P	5.251462	P	1.02011903054596	0	lncRNA	TCONS_00001250	NA	NA	NA	NA	XLOC_000535	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000535), lincRNA [TCONS_00001250]"	chr1:205752531-205752590	hs|1q32.1	Agilent_HUMAN_G3V2	TCONS_00001250	TCONS_00001250	chr1	205752531	205752590	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002579	1.3614843	A	1.0592957	A	1.233013503773	0	lncRNA	TCONS_00004716	NA	NA	NA	NA	XLOC_001393	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001393), lincRNA [TCONS_00004716]"	chr2:22762634-22762693	hs|2p24.1	Agilent_HUMAN_G3V2	TCONS_00004716	TCONS_00004716	chr2	 22762634	 22762693	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008894	0.92032236	A	1.6427778	A	0.606065052498914	0	lncRNA	BC043543	NA	BC043543	NA	Hs.585717	XLOC_011818	NA	NA	THC2604419	NA	"BROAD Institute lincRNA (XLOC_011818), lincRNA [TCONS_00024298]"	chr16:87259961-87260020	hs|16q24.2	Agilent_HUMAN_G3V2	BC043543	BC043543	chr16	 87259961	 87260020	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001683	0.9193467	A	1.2496109	A	0.795390810907171	0	lncRNA	TCONS_00002048	NA	NA	NA	NA	XLOC_000232	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000232), lincRNA [TCONS_00002048]"	chr1:63664719-63664778	hs|1p31.3	Agilent_HUMAN_G3V2	TCONS_00002048	TCONS_00002048	chr1	 63664719	 63664778	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008146	0.919929	A	0.91128206	A	1.00601159965322	0	lncRNA	TCONS_00021975	NA	NA	NA	NA	XLOC_010576	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010576), lincRNA [TCONS_00021975]"	chr13:39910481-39910422	hs|13q13.3	Agilent_HUMAN_G3V2	TCONS_00021975	TCONS_00021975	chr13	 39910422	 39910481	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_32468_PI429285431	2.5184886	A	2.5491202	A	0.978991609296757	0	lncRNA	34137-3_{6001..7363}	n339070|CR749843|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1500|NULL|-1.0376300|-0.3445410	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,"	>n339070|CR749843|mRNAlikelncRNA|Homosapiens|HumanlncRNA|JounralRNA|1500|NULL|-1.0376300|-0.3445410	chr16	  9853267	  9854629	-	NA	NA	NA	NA	GRIN2A	NA	chr16:9847265-9864556	inner
LNCA_21_P0008149	1.0201662	A	1.0655556	A	0.969028229759186	0	lncRNA	TCONS_00021983	NA	NA	NA	NA	XLOC_010585	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010585), lincRNA [TCONS_00021983]"	chr13:44671164-44671105	hs|13q14.11	Agilent_HUMAN_G3V2	TCONS_00021983	TCONS_00021983	chr13	 44671105	 44671164	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002931	6.88863	P	6.782068	P	1.07665945441131	0	lncRNA	TCONS_00005948	NA	NA	NA	NA	XLOC_002578	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002578), lincRNA [TCONS_00005948]"	chr3:12917160-12917219	hs|3p25.2	Agilent_HUMAN_G3V2	TCONS_00005948	TCONS_00005948	chr3	 12917160	 12917219	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009325	4.046092	P	4.118623	P	0.950968197459428	0	lncRNA	TCONS_00025634	NA	NA	NA	NA	XLOC_012471	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012471), lincRNA [TCONS_00025634]"	chr17:38691175-38691116	hs|17q21.2	Agilent_HUMAN_G3V2	TCONS_00025634	TCONS_00025634	chr17	 38691116	 38691175	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005335	6.1125813	P	6.310626	P	0.871731229678063	0	lncRNA	ENST00000453087	NA	NA	NA	NA	XLOC_006611	NA	ENST00000453087	NA	NA	"BROAD Institute lincRNA (XLOC_006611), lincRNA [TCONS_00013264]"	chr7:134030882-134030823	hs|7q33	Agilent_HUMAN_G3V2	ENST00000453087	ENST00000453087	chr7	134030823	134030882	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002336	0.93438613	A	0.90778583	A	1.01860895096511	0	lncRNA	TCONS_00003986	NA	NA	NA	NA	XLOC_001809	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001809), lincRNA [TCONS_00003986]"	chr2:202042591-202042650	hs|2q33.1	Agilent_HUMAN_G3V2	TCONS_00003986	TCONS_00003986	chr2	202042591	202042650	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007580	1.0130213	A	1.06286	A	0.966044331126042	0	lncRNA	TCONS_00020470	NA	NA	NA	NA	XLOC_009803	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009803), lincRNA [TCONS_00020470]"	chr12:73362034-73362093	hs|12q21.1	Agilent_HUMAN_G3V2	TCONS_00020470	TCONS_00020470	chr12	 73362034	 73362093	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009512	4.493629	P	4.3990517	P	1.06775251786481	0	lncRNA	TCONS_00026391	NA	NA	NA	NA	XLOC_012740	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012740), lincRNA [TCONS_00026391]"	chr18:716564-716505	hs|18p11.32	Agilent_HUMAN_G3V2	TCONS_00026391	TCONS_00026391	chr18	   716505	   716564	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014948	7.075018	P	7.188108	P	0.924605596415927	0	lncRNA	ENST00000313929	XR_133570	XR_133570	NA	Hs.719930	LOC100510710	NA	ENST00000313929	THC2561705	NA	"PREDICTED: Homo sapiens glucosylceramidase-like (LOC100510710), partial miscRNA [XR_133570]"	chr1:155185555-155185496	hs|1q22	Agilent_HUMAN_G3V2	ENST00000313929	ENST00000313929	chr1	155185496	155185555	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007142	0.9302151	A	1.003466	A	0.950493785884352	0	lncRNA	ENST00000505409	NA	NA	NA	NA	XLOC_009095	NA	ENST00000505409	NA	NA	"BROAD Institute lincRNA (XLOC_009095), lincRNA [TCONS_00019142]"	chr11:28704860-28704919	hs|11p14.1	Agilent_HUMAN_G3V2	ENST00000505409	ENST00000505409	chr11	 28704860	 28704919	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014297	6.311002	P	6.485322	P	0.886185115245308	0	lncRNA	XR_109216	XR_109216	XR_109216	NA	Hs.369935	LOC100506983	uncharacterized LOC100506983	NA	THC2606156	NA	"PREDICTED: Homo sapiens hypothetical LOC100506983, transcript variant 1 (LOC100506983), miscRNA [XR_109216]"	chr15:89879255-89879314	hs|15q26.1	Agilent_HUMAN_G3V2	XR_109216	XR_109216	chr15	 89879255	 89879314	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006281	1.8823773	A	1.2706711	A	1.52806530370977	0	lncRNA	TCONS_00016365	NA	NA	NA	NA	XLOC_007744	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007744), lincRNA [TCONS_00016365]"	chr9:81495342-81495283	hs|9q21.31	Agilent_HUMAN_G3V2	TCONS_00016365	TCONS_00016365	chr9	 81495283	 81495342	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010283	2.060801	A	1.7641134	A	1.22832097203098	0	lncRNA	TCONS_00029141	NA	NA	NA	NA	XLOC_014082	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_014082), lincRNA [TCONS_00029141]"	chr21:40448053-40447994	hs|21q22.2	Agilent_HUMAN_G3V2	TCONS_00029141	TCONS_00029141	chr21	 40447994	 40448053	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006429	0.9205681	A	0.92511046	A	0.996856427376785	0	lncRNA	TCONS_00017001	NA	NA	NA	NA	XLOC_008024	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008024), lincRNA [TCONS_00017001]"	chrX:100262272-100262331	hs|Xq22.1	Agilent_HUMAN_G3V2	TCONS_00017001	TCONS_00017001	chrX	100262272	100262331	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014569	0.91976035	A	0.9206096	A	0.999411517980416	0	lncRNA	XR_110330	XR_110330	XR_110330	NA	Hs.145556	LOC100505645	uncharacterized LOC100505645	ENST00000553095	THC2681172	NA	"PREDICTED: Homo sapiens hypothetical LOC100505645 (LOC100505645), miscRNA [XR_110330]"	chr12:96197000-96216877	hs|12q22	Agilent_HUMAN_G3V2	XR_110330	XR_110330	chr12	 96197000	 96216877	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3373437	6.7571917	P	7.3348017	P	0.670072915802119	0	lncRNA	XR_108760	XR_108760	XR_108760	100129463	NA	LOC100129463	uncharacterized LOC100129463	ENST00000523608	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100129463 (LOC100129463), miscRNA [XR_108760]"	chr7:27279361-27279302	hs|7p15.2	Agilent_HUMAN_G3V2	XR_108760	XR_108760	chr7	 27279302	 27279361	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013516	9.813553	P	9.144575	P	1.58994625624426	0	lncRNA	TCONS_l2_00028204	NA	NA	NA	NA	XLOC_l2_014518	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_014518), lincRNA [TCONS_l2_00028204]"	chr8:57014241-57014182	hs|8q12.1	Agilent_HUMAN_G3V2	TCONS_l2_00028204	TCONS_l2_00028204	chr8	 57014182	 57014241	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004518	0.9282791	A	1.5816205	A	0.635806028145239	0	lncRNA	TCONS_00010736	NA	NA	NA	NA	XLOC_004459	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004459), lincRNA [TCONS_00010736]"	chr5:87732799-87732858	hs|5q14.3	Agilent_HUMAN_G3V2	TCONS_00010736	TCONS_00010736	chr5	 87732799	 87732858	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008236	1.0052297	A	0.91620743	A	1.06364909166623	0	lncRNA	TCONS_00022191	NA	NA	NA	NA	XLOC_010419	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010419), lincRNA [TCONS_00022191]"	chr13:68611204-68611263	hs|13q21.33	Agilent_HUMAN_G3V2	TCONS_00022191	TCONS_00022191	chr13	 68611204	 68611263	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001740	4.851006	P	4.2433124	P	1.52382116638051	0	lncRNA	TCONS_00002455	NA	NA	NA	NA	XLOC_000984	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000984), lincRNA [TCONS_00002455]"	chr1:119860495-119860436	hs|1p12	Agilent_HUMAN_G3V2	TCONS_00002455	TCONS_00002455	chr1	119860436	119860495	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014885	8.894165	P	8.818287	P	1.0540022889188	0	lncRNA	XR_132801	XR_132801	XR_132801	NA	Hs.730074	LOC100506257	uncharacterized LOC100506257	NA	THC2717460	NA	"PREDICTED: Homo sapiens hypothetical LOC100506257 (LOC100506257), miscRNA [XR_132801]"	chr1:110773983-110774042	hs|1p13.3	Agilent_HUMAN_G3V2	XR_132801	XR_132801	chr1	110773983	110774042	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011759	2.4795048	A	2.2387056	A	1.18164706917715	0	lncRNA	TCONS_l2_00013207	NA	NA	NA	NA	XLOC_l2_007112	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_007112), lincRNA [TCONS_l2_00013207]"	chr19:53482204-53482145	hs|19q13.41	Agilent_HUMAN_G3V2	TCONS_l2_00013207	TCONS_l2_00013207	chr19	 53482145	 53482204	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3221578	0.92031455	A	2.8090878	A	0.270036578575428	0	lncRNA	XR_108892	XR_108892	XR_108892	   401478	Hs.654931	FLJ45872	FLJ45872 protein	NA	NA	NA	"PREDICTED: Homo sapiens FLJ45872 protein (FLJ45872), miscRNA [XR_108892]"	chr8:138821750-138821691	hs|8q24.23	Agilent_HUMAN_G3V2	XR_108892	XR_108892	chr8	138821691	138821750	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010083	0.9209333	A	0.910813	A	1.00703951915615	0	lncRNA	TCONS_00028505	NA	NA	NA	NA	XLOC_013471	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013471), lincRNA [TCONS_00028505]"	chr20:18253419-18253478	hs|20p11.23	Agilent_HUMAN_G3V2	TCONS_00028505	TCONS_00028505	chr20	 18253419	 18253478	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_43124_PI429285431	2.1976192	A	1.4511027	A	1.67773690883671	0	lncRNA	47939-1_{1..3000}	ENST00000592718 havana:lincRNA chromosome:GRCh37:HG748_PATCH:77703348:77708399:1 gene:ENSG00000267719 gene_biotype:lincRNA transcript_biotype:lincRNA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	ensembl.GRCh37.72	"ensembl.GRCh37.72,"	>ENST00000592718 havana:lincRNA chromosome:GRCh37:HG748_PATCH:77703348:77708399:1 gene:ENSG00000267719 gene_biotype:lincRNA transcript_biotype:lincRNA	chrHG748_PATCH	 77703348	 77706347	+	ENSG00000267719	ENST00000592718	NA	NA	NA	"hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.00;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-54.00;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-49.90;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-70.90;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-76.20;hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0,hg19_refFlat_C1orf86:range=chr1:2124297-21261885'pad=0 3'pad=0 strand=- repeatMasking=none,-66.80;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.50;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.90;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.00;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.80;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-78.50;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.90;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-78.40;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-83.90;hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0,hg19_refFlat_LOC100130357:range=chr6:13281192-132955435'pad=0 3'pad=0 strand=- repeatMasking=none,-79.60;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.60;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-74.60;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-51.00;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.20;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-81.00;hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-82.90;hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0,hg19_refFlat_CHID1:range=chr11:869858-9048165'pad=0 3'pad=0 strand=- repeatMasking=none,-52.60;hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0,hg19_refFlat_FBXO18:range=chr10:5948065-59792435'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.00;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.90;hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0,hg19_refFlat_PDLIM5:range=chr4:95376440-953777095'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.00;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-76.10;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-37.80;hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0,hg19_refFlat_NEK5:range=chr13:52639543-527016185'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0,hg19_refFlat_RHBG:range=chr1:156339204-1563546375'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.20;hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0,hg19_refFlat_ALG8:range=chr11:77813940-778506345'pad=0 3'pad=0 strand=- repeatMasking=none,-79.10;hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0,hg19_refFlat_TCF4:range=chr18:52895456-533031285'pad=0 3'pad=0 strand=- repeatMasking=none,-85.00;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-52.20;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.40;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-75.60;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-82.20;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.70;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0,hg19_refFlat_LOC100505549:range=chr18:55309146-553354075'pad=0 3'pad=0 strand=+ repeatMasking=none,-61.30;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-71.10;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.50;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.70;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.10;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-26.20;hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0,hg19_refFlat_SGCE:range=chr7:94214811-942854105'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-33.00;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-53.86;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.20;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-68.90"	NA	Unknown
LNCA_32_P36143	7.096887	P	7.29231	P	0.873316800790742	0	lncRNA	XR_112950	XR_112950	XR_112950	   729088	Hs.416013	LOC729088	uncharacterized LOC729088	NA	THC2591459	NA	"PREDICTED: Homo sapiens hypothetical LOC729088 (LOC729088), miscRNA [XR_112950]"	chr6:170125657-170125716	hs|6q27	Agilent_HUMAN_G3V2	XR_112950	XR_112950	chr6	170125657	170125716	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005694	0.99672675	A	0.91407	A	1.05896635250128	0	lncRNA	ENST00000522575	NA	AK092055	NA	Hs.683934	XLOC_006791	NA	ENST00000522575	THC2632496	NA	"BROAD Institute lincRNA (XLOC_006791), lincRNA [TCONS_00014693]"	chr8:49609309-49609368	hs|8q11.21	Agilent_HUMAN_G3V2	ENST00000522575	ENST00000522575	chr8	 49609309	 49609368	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37232_PI429285431	4.964548	P	5.016436	P	0.964673071644281	0	lncRNA	38341-2_{3001..3328}	n345664|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1213|NULL|-1.7555600|-0.2392483	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n345664|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1213|NULL|-1.7555600|-0.2392483	chr5	141137500	141137827	-	NA	NA	NA	NA	NA	"hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-45.20;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-82.00;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.80;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.40;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-86.40;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.60;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-75.40"	NA	inter
LNCA_21_P0007446	3.7731338	P	4.41573	P	0.640559193502943	0	lncRNA	TCONS_00019972	NA	NA	NA	NA	XLOC_009249	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009249), lincRNA [TCONS_00019972]"	chr11:91584528-91589155	hs|11q14.3	Agilent_HUMAN_G3V2	TCONS_00019972	TCONS_00019972	chr11	 91584528	 91589155	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012138	1.1273614	A	2.5209308	A	0.380621932172336	0	lncRNA	TCONS_l2_00016499	NA	NA	NA	NA	XLOC_l2_008783	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008783), lincRNA [TCONS_l2_00016499]"	chr20:20830220-20830161	hs|20p11.23	Agilent_HUMAN_G3V2	TCONS_l2_00016499	TCONS_l2_00016499	chr20	 20830161	 20830220	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006395	10.56137	P	10.41949	P	1.10334196282062	0	lncRNA	TCONS_00016872	NA	NA	NA	NA	XLOC_007858	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007858), lincRNA [TCONS_00016872]"	chr9:130873989-130873456	hs|9q34.11	Agilent_HUMAN_G3V2	TCONS_00016872	TCONS_00016872	chr9	130873456	130873989	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013184	4.0913754	P	4.33693	P	0.843491479286576	0	lncRNA	TCONS_l2_00025724	NA	NA	NA	NA	XLOC_l2_013311	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_013311), lincRNA [TCONS_l2_00025724]"	chr7:25233382-25233441	hs|7p15.3	Agilent_HUMAN_G3V2	TCONS_l2_00025724	TCONS_l2_00025724	chr7	 25233382	 25233441	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006596	0.92758876	A	0.907657	A	1.01391152027222	0	lncRNA	ENST00000417910	NA	NA	NA	NA	XLOC_008300	NA	ENST00000417910	NA	NA	"BROAD Institute lincRNA (XLOC_008300), lincRNA [TCONS_00017616]"	chrY:24631677-24631736	hs|Yq11.223	Agilent_HUMAN_G3V2	ENST00000417910	ENST00000417910	chrY	 24631677	 24631736	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004849	0.9304166	A	0.907979	A	1.01567412965336	0	lncRNA	TCONS_00011715	NA	NA	NA	NA	XLOC_005193	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005193), lincRNA [TCONS_00011715]"	chr6:19809440-19809499	hs|6p22.3	Agilent_HUMAN_G3V2	TCONS_00011715	TCONS_00011715	chr6	 19809440	 19809499	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001516	0.978244	A	0.9113715	A	1.04744355385958	0	lncRNA	TCONS_00001511	NA	NA	NA	NA	XLOC_000855	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000855), lincRNA [TCONS_00001511]"	chr1:61088207-61065902	hs|1p32.1	Agilent_HUMAN_G3V2	TCONS_00001511	TCONS_00001511	chr1	 61065902	 61088207	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009064	0.9920147	A	0.9132925	A	1.05608225049526	0	lncRNA	TCONS_00024733	NA	NA	NA	NA	XLOC_012014	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012014), lincRNA [TCONS_00024733]"	chr16:77028264-77028205	hs|16q23.1	Agilent_HUMAN_G3V2	TCONS_00024733	TCONS_00024733	chr16	 77028205	 77028264	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003874	1.0268422	A	1.0671324	A	0.972459316270076	0	lncRNA	TCONS_00008975	NA	NA	NA	NA	XLOC_003829	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_003829), lincRNA [TCONS_00008975]"	chr4:188554300-188626176	hs|4q35.2	Agilent_HUMAN_G3V2	TCONS_00008975	TCONS_00008975	chr4	188554300	188626176	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004954	1.0246352	A	1.0675895	A	0.970665216875885	0	lncRNA	TCONS_00011982	NA	NA	NA	NA	XLOC_005493	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005493), lincRNA [TCONS_00011982]"	chr6:145470216-145470275	hs|6q24.2	Agilent_HUMAN_G3V2	TCONS_00011982	TCONS_00011982	chr6	145470216	145470275	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001944	1.1915286	A	1.0276284	A	1.12031171273126	0	lncRNA	ENST00000428474	NA	AK125001	NA	Hs.580074	XLOC_001776	NA	ENST00000428474	THC2518790	NA	"BROAD Institute lincRNA (XLOC_001776), lincRNA [TCONS_00003062]"	chr2:182227555-182227614	hs|2q31.3	Agilent_HUMAN_G3V2	ENST00000428474	ENST00000428474	chr2	182227555	182227614	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006131	0.9241002	A	0.908591	A	1.01080814882027	0	lncRNA	TCONS_00015934	NA	NA	NA	NA	XLOC_007304	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007304), lincRNA [TCONS_00015934]"	chr9:24553022-24553081	hs|9p21.3	Agilent_HUMAN_G3V2	TCONS_00015934	TCONS_00015934	chr9	 24553022	 24553081	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005741	0.93097806	A	0.9082839	A	1.01585476694592	0	lncRNA	TCONS_00014807	NA	NA	NA	NA	XLOC_006882	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006882), lincRNA [TCONS_00014807]"	chr8:101512537-101512596	hs|8q22.2	Agilent_HUMAN_G3V2	TCONS_00014807	TCONS_00014807	chr8	101512537	101512596	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002730	3.3836868	P	4.0082717	P	0.648606371004418	0	lncRNA	ENST00000425195	NA	NA	NA	NA	XLOC_002603	NA	ENST00000425195	NA	NA	"BROAD Institute lincRNA (XLOC_002603), lincRNA [TCONS_00006809]"	chr3:27901705-27901764	hs|3p24.1	Agilent_HUMAN_G3V2	ENST00000425195	ENST00000425195	chr3	 27901705	 27901764	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001503	1.0136031	A	1.0647249	A	0.965185535327872	0	lncRNA	TCONS_00001492	NA	NA	NA	NA	XLOC_000832	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000832), lincRNA [TCONS_00001492]"	chr1:50782750-50782691	hs|1p32.3	Agilent_HUMAN_G3V2	TCONS_00001492	TCONS_00001492	chr1	 50782691	 50782750	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005581	1.0022212	A	1.0564712	A	0.963094987915382	0	lncRNA	TCONS_00014227	NA	NA	NA	NA	XLOC_006283	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006283), lincRNA [TCONS_00014227]"	chr7:144854063-144854122	hs|7q35	Agilent_HUMAN_G3V2	TCONS_00014227	TCONS_00014227	chr7	144854063	144854122	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005445	2.0393634	A	3.3179278	P	0.412205482915367	0	lncRNA	TCONS_00013634	NA	NA	NA	NA	XLOC_006297	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006297), lincRNA [TCONS_00013634]"	chr7:153086754-153086813	hs|7q36.2	Agilent_HUMAN_G3V2	TCONS_00013634	TCONS_00013634	chr7	153086754	153086813	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007627	4.662725	P	4.994606	P	0.794499931334507	0	lncRNA	TCONS_00020565	NA	NA	NA	NA	XLOC_009884	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009884), lincRNA [TCONS_00020565]"	chr12:113851684-113851743	hs|12q24.13	Agilent_HUMAN_G3V2	TCONS_00020565	TCONS_00020565	chr12	113851684	113851743	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002573	4.9236603	P	4.697635	P	1.1696081748505	0	lncRNA	TCONS_00004693	NA	NA	NA	NA	XLOC_001342	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001342), lincRNA [TCONS_00004693]"	chr2:10589969-10590329	hs|2p25.1	Agilent_HUMAN_G3V2	TCONS_00004693	TCONS_00004693	chr2	 10589969	 10590329	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011570	0.96529704	A	0.9102485	A	1.0388940566785	0	lncRNA	TCONS_l2_00011108	NA	NA	NA	NA	XLOC_l2_005997	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005997), lincRNA [TCONS_l2_00011108]"	chr17:15663747-15663688	hs|17p12	Agilent_HUMAN_G3V2	TCONS_l2_00011108	TCONS_l2_00011108	chr17	 15663688	 15663747	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012929	4.143864	P	4.287204	P	0.905420577367207	0	lncRNA	TCONS_l2_00023251	NA	NA	NA	NA	XLOC_l2_012319	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_012319), lincRNA [TCONS_l2_00023251]"	chr5:175344898-175344839	hs|5q35.2	Agilent_HUMAN_G3V2	TCONS_l2_00023251	TCONS_l2_00023251	chr5	175344839	175344898	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014504	1.2489722	A	2.3153548	A	0.477514815370771	0	lncRNA	XR_110128	XR_110128	XR_110128	NA	Hs.447508	LINC00402	long intergenic non-protein coding RNA 402	NA	THC2620794	NA	"PREDICTED: Homo sapiens hypothetical LOC100507612 (LOC100507612), miscRNA [XR_110128]"	chr13:74833929-74833988	hs|13q22.1	Agilent_HUMAN_G3V2	XR_110128	XR_110128	chr13	 74833929	 74833988	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_48601_PI429285431	2.8720036	A	3.0677135	A	0.87314314685033	0	lncRNA	52447-1_{1..573}	hg19_lincRNAsTranscripts_TCONS_l2_00014533 range=chr2:43053477-43054362 5'pad=0 3'pad=0 strand=- repeatMasking=none	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	UCSC	"UCSC,"	>hg19_lincRNAsTranscripts_TCONS_l2_00014533 range=chr2:43053477-43054362 5'pad=0 3'pad=0 strand=- repeatMasking=none	chr2	 43053477	 43054049	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0003606	4.5278087	P	4.9252925	P	0.759181214889894	0	lncRNA	ENST00000508352	NA	NA	NA	NA	XLOC_003526	NA	ENST00000508352	THC2669712	NA	"BROAD Institute lincRNA (XLOC_003526), lincRNA [TCONS_00008059]"	chr4:43347450-43347509	hs|4p13	Agilent_HUMAN_G3V2	ENST00000508352	ENST00000508352	chr4	 43347450	 43347509	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002284	3.2619486	P	1.7821971	A	2.78900689304711	0	lncRNA	TCONS_00003843	NA	NA	NA	NA	XLOC_001649	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001649), lincRNA [TCONS_00003843]"	chr2:123224344-123229226	hs|2q14.3	Agilent_HUMAN_G3V2	TCONS_00003843	TCONS_00003843	chr2	123224344	123229226	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001275	2.491297	A	2.41124	A	1.05705980352364	0	lncRNA	TCONS_00000873	NA	NA	NA	NA	XLOC_000111	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000111), lincRNA [TCONS_00000873]"	chr1:29460298-29460357	hs|1p35.3	Agilent_HUMAN_G3V2	TCONS_00000873	TCONS_00000873	chr1	 29460298	 29460357	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009691	0.9221039	A	0.9109136	A	1.00778668466174	0	lncRNA	TCONS_00026943	NA	NA	NA	NA	XLOC_013004	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013004), lincRNA [TCONS_00026943]"	chr19:20857784-20857843	hs|19p12	Agilent_HUMAN_G3V2	TCONS_00026943	TCONS_00026943	chr19	 20857784	 20857843	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008917	11.524867	P	11.594226	P	0.953061356145032	0	lncRNA	TCONS_00024354	NA	NA	NA	NA	XLOC_011676	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011676), lincRNA [TCONS_00024354]"	chr16:24621590-24621649	hs|16p12.1	Agilent_HUMAN_G3V2	TCONS_00024354	TCONS_00024354	chr16	 24621590	 24621649	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002361	2.18735	A	3.0150087	A	0.563442892806465	0	lncRNA	TCONS_00004037	NA	NA	NA	NA	XLOC_001876	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001876), lincRNA [TCONS_00004037]"	chr2:222565100-222565159	hs|2q36.1	Agilent_HUMAN_G3V2	TCONS_00004037	TCONS_00004037	chr2	222565100	222565159	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004300	5.1555653	P	5.2263117	P	0.952145263905844	0	lncRNA	TCONS_00010097	NA	NA	NA	NA	XLOC_004562	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004562), lincRNA [TCONS_00010097]"	chr5:134603521-134603580	hs|5q31.1	Agilent_HUMAN_G3V2	TCONS_00010097	TCONS_00010097	chr5	134603521	134603580	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012134	1.5084784	A	1.4530861	A	1.03914162997847	0	lncRNA	TCONS_l2_00016426	NA	NA	NA	NA	XLOC_l2_008733	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008733), lincRNA [TCONS_l2_00016426]"	chr20:1678231-1678172	hs|20p13	Agilent_HUMAN_G3V2	TCONS_l2_00016426	TCONS_l2_00016426	chr20	  1678172	  1678231	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003059	0.99408525	A	2.966916	A	0.254752683753122	0	lncRNA	TCONS_00006308	NA	NA	NA	NA	XLOC_002918	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002918), lincRNA [TCONS_00006308]"	chr3:170072168-170072227	hs|3q26.2	Agilent_HUMAN_G3V2	TCONS_00006308	TCONS_00006308	chr3	170072168	170072227	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3897698	0.9203406	A	0.93597865	A	0.989219065102508	0	lncRNA	XR_108300	XR_108300	XR_108300	100147773	Hs.633824	LOC100147773	uncharacterized LOC100147773	NA	THC2625671	NA	"PREDICTED: Homo sapiens hypothetical LOC100147773 (LOC100147773), miscRNA [XR_108300]"	chr1:165744354-165744413	hs|1q24.1	Agilent_HUMAN_G3V2	XR_108300	XR_108300	chr1	165744354	165744413	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001512	0.9776853	A	0.9117231	A	1.04678285489597	0	lncRNA	TCONS_00001505	NA	NA	NA	NA	XLOC_000846	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000846), lincRNA [TCONS_00001505]"	chr1:57110001-57109942	hs|1p32.2	Agilent_HUMAN_G3V2	TCONS_00001505	TCONS_00001505	chr1	 57109942	 57110001	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007177	0.99238676	A	1.0510042	A	0.960183839602866	0	lncRNA	ENST00000531749	NA	NA	NA	NA	XLOC_009070	NA	ENST00000531749	NA	NA	"BROAD Institute lincRNA (XLOC_009070), lincRNA [TCONS_00019239]"	chr11:13869346-13869405	hs|11p15.2	Agilent_HUMAN_G3V2	ENST00000531749	ENST00000531749	chr11	 13869346	 13869405	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014762	4.8798037	P	4.9034348	P	0.983753589623723	0	lncRNA	XR_132528	XR_132528	XR_132528	NA	NA	LOC100652832	NA	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100652832 (LOC100652832), miscRNA [XR_132528]"	chr7:5643658-5643599	hs|7p22.1	Agilent_HUMAN_G3V2	XR_132528	XR_132528	chr7	  5643599	  5643658	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002971	1.9085419	A	1.8712187	A	1.02620801601174	0	lncRNA	TCONS_00006085	NA	NA	NA	NA	XLOC_002694	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002694), lincRNA [TCONS_00006085]"	chr3:69018768-69018827	hs|3p14.1	Agilent_HUMAN_G3V2	TCONS_00006085	TCONS_00006085	chr3	 69018768	 69018827	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3381796	6.1804767	P	6.3230467	P	0.9059039504342	0	lncRNA	XR_108716	NA	XR_108716	   393078	Hs.632008	LOC393078	uncharacterized LOC393078	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC393078 (LOC393078), miscRNA [XR_108716]"	chr7:157233772-157233713	hs|7q36.3	Agilent_HUMAN_G3V2	XR_108716	XR_108716	chr7	157233713	157233772	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011699	3.5531437	P	3.5955443	P	0.971037825407433	0	lncRNA	TCONS_l2_00012563	NA	NA	NA	NA	XLOC_l2_006745	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006745), lincRNA [TCONS_l2_00012563]"	chr19:43158382-43173162	hs|19q13.2	Agilent_HUMAN_G3V2	TCONS_l2_00012563	TCONS_l2_00012563	chr19	 43158382	 43173162	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003222	5.5029917	P	6.4700747	P	0.511539304542428	0	lncRNA	TCONS_00006797	NA	NA	NA	NA	XLOC_002588	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_002588), lincRNA [TCONS_00006797]"	chr3:16582826-16582885	hs|3p24.3	Agilent_HUMAN_G3V2	TCONS_00006797	TCONS_00006797	chr3	 16582826	 16582885	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007875	1.0933566	A	1.4974114	A	0.755731257565038	0	lncRNA	TCONS_00021306	NA	NA	NA	NA	XLOC_010061	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010061), lincRNA [TCONS_00021306]"	chr12:46787283-46786680	hs|12q13.11	Agilent_HUMAN_G3V2	TCONS_00021306	TCONS_00021306	chr12	 46786680	 46787283	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004423	1.7410858	A	2.1860187	A	0.73461848307941	0	lncRNA	TCONS_00010404	NA	NA	NA	NA	XLOC_004924	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004924), lincRNA [TCONS_00010404]"	chr5:90602415-90602356	hs|5q14.3	Agilent_HUMAN_G3V2	TCONS_00010404	TCONS_00010404	chr5	 90602356	 90602415	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009078	3.728269	P	4.0136075	P	0.820549060533393	0	lncRNA	TCONS_00024753	NA	NA	NA	NA	XLOC_012037	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012037), lincRNA [TCONS_00024753]"	chr16:85617048-85616989	hs|16q24.1	Agilent_HUMAN_G3V2	TCONS_00024753	TCONS_00024753	chr16	 85616989	 85617048	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003778	2.1136687	A	2.5552332	A	0.736335671946269	0	lncRNA	ENST00000508388	NA	NA	NA	NA	XLOC_004104	NA	ENST00000508388	NA	NA	"BROAD Institute lincRNA (XLOC_004104), lincRNA [TCONS_00008600]"	chr4:142497209-142497150	hs|4q31.21	Agilent_HUMAN_G3V2	ENST00000508388	ENST00000508388	chr4	142497150	142497209	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013861	1.4441018	A	0.9090123	A	1.44903204489324	0	lncRNA	ENST00000422048	NA	BC024027	NA	NA	XLOC_l2_015700	NA	ENST00000422048	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015700), lincRNA [TCONS_l2_00030798]"	chrX:27193900-27193841	hs|Xp21.3	Agilent_HUMAN_G3V2	ENST00000422048	ENST00000422048	chrX	 27193841	 27193900	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014711	9.416527	P	9.280038	P	1.09922673621237	0	lncRNA	XR_112445	XR_112445	XR_112445	NA	Hs.292026	LOC100507948	uncharacterized LOC100507948	ENST00000409514	THC2504963	NA	"PREDICTED: Homo sapiens hypothetical LOC100507948, transcript variant 1 (LOC100507948), miscRNA [XR_112445]"	chr2:233446105-233446164	hs|2q37.1	Agilent_HUMAN_G3V2	XR_112445	XR_112445	chr2	233446105	233446164	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006989	2.2913034	A	3.3243132	P	0.488689563602955	0	lncRNA	THC2688315	NA	NA	NA	NA	XLOC_008795	NA	NA	THC2688315	NA	"BROAD Institute lincRNA (XLOC_008795), lincRNA [TCONS_00018493]"	chr10:044787612-044787553	hs|10q11.21	Agilent_HUMAN_G3V2	THC2688315	THC2688315	chr10	 44787553	 44787612	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002145	0.98962337	A	0.9199249	A	1.04949731086046	0	lncRNA	ENST00000444926	NA	NA	NA	NA	XLOC_002524	NA	ENST00000444926	NA	NA	"BROAD Institute lincRNA (XLOC_002524), lincRNA [TCONS_00003516]"	chr2:235993865-235993806	hs|2q37.2	Agilent_HUMAN_G3V2	ENST00000444926	ENST00000444926	chr2	235993806	235993865	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3373243	1.6549201	A	2.1331162	A	0.717874670730852	0	lncRNA	XR_110135	XR_110135	XR_110135	   162137	Hs.617031	MGC34800	uncharacterized protein MGC34800	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical protein MGC34800 (MGC34800), miscRNA [XR_110135]"	chr16:34258499-34258558	hs|16p11.2	Agilent_HUMAN_G3V2	XR_110135	XR_110135	chr16	 34258499	 34258558	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001637	1.8633659	A	1.1553471	A	1.63355926926498	0	lncRNA	TCONS_00001853	NA	NA	NA	NA	XLOC_001241	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001241), lincRNA [TCONS_00001853]"	chr1:228623103-228623044	hs|1q42.13	Agilent_HUMAN_G3V2	TCONS_00001853	TCONS_00001853	chr1	228623044	228623103	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010103	0.9294715	A	1.4464537	A	0.698832108076739	0	lncRNA	TCONS_00028604	NA	NA	NA	NA	XLOC_013639	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_013639), lincRNA [TCONS_00028604]"	chr20:4552582-4552523	hs|20p13	Agilent_HUMAN_G3V2	TCONS_00028604	TCONS_00028604	chr20	  4552523	  4552582	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001439	0.92433846	A	0.957237	A	0.977454505156088	0	lncRNA	TCONS_00001329	NA	NA	NA	NA	XLOC_000618	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000618), lincRNA [TCONS_00001329]"	chr1:233031552-233033026	hs|1q42.2	Agilent_HUMAN_G3V2	TCONS_00001329	TCONS_00001329	chr1	233031552	233033026	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004231	3.2444823	P	3.4577136	P	0.862603036673283	0	lncRNA	TCONS_00009878	NA	NA	NA	NA	XLOC_004300	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004300), lincRNA [TCONS_00009878]"	chr5:14976867-14976926	hs|5p15.2	Agilent_HUMAN_G3V2	TCONS_00009878	TCONS_00009878	chr5	 14976867	 14976926	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008001	4.5387874	P	4.767889	P	0.853166012843356	0	lncRNA	ENST00000443621	NA	NA	NA	NA	XLOC_010652	NA	ENST00000443621	NA	NA	"BROAD Institute lincRNA (XLOC_010652), lincRNA [TCONS_00021669]"	chr13:73987729-73987670	hs|13q22.1	Agilent_HUMAN_G3V2	ENST00000443621	ENST00000443621	chr13	 73987670	 73987729	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011720	0.92891574	A	0.9092099	A	1.01375275840643	0	lncRNA	TCONS_l2_00012844	NA	NA	NA	NA	XLOC_l2_006905	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006905), lincRNA [TCONS_l2_00012844]"	chr19:9898079-9898020	hs|19p13.2	Agilent_HUMAN_G3V2	TCONS_l2_00012844	TCONS_l2_00012844	chr19	  9898020	  9898079	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014476	4.1275373	P	2.4467027	A	3.20613372437631	0	lncRNA	XR_110002	XR_110002	XR_110002	NA	Hs.662634	LOC100506651	uncharacterized LOC100506651	NA	THC2532158	NA	"PREDICTED: Homo sapiens hypothetical LOC100506651 (LOC100506651), miscRNA [XR_110002]"	chr3:48975039-48975098	hs|3p21.31	Agilent_HUMAN_G3V2	XR_110002	XR_110002	chr3	 48975039	 48975098	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010858	0.97705376	A	0.9120143	A	1.04611355226785	0	lncRNA	TCONS_l2_00003421	NA	NA	NA	NA	XLOC_l2_001875	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_001875), lincRNA [TCONS_l2_00003421]"	chr10:18942696-18942637	hs|10p12.31	Agilent_HUMAN_G3V2	TCONS_l2_00003421	TCONS_l2_00003421	chr10	 18942637	 18942696	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006452	3.9612327	P	4.2782016	P	0.802754693413876	0	lncRNA	ENST00000454131	NA	NA	NA	NA	XLOC_008177	NA	ENST00000454131	NA	NA	"BROAD Institute lincRNA (XLOC_008177), lincRNA [TCONS_00017063]"	chrX:68789571-68789512	hs|Xq13.1	Agilent_HUMAN_G3V2	ENST00000454131	ENST00000454131	chrX	 68789512	 68789571	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014250	1.0193537	A	0.9214454	A	1.07022067133026	0	lncRNA	XR_109018	XR_109018	XR_109018	NA	Hs.729523	LOC100289455	uncharacterized LOC100289455	NA	NA	NA	"PREDICTED: Homo sapiens hypothetical LOC100289455 (LOC100289455), miscRNA [XR_109018]"	chr10:22727329-22727388	hs|10p12.2	Agilent_HUMAN_G3V2	XR_109018	XR_109018	chr10	 22727329	 22727388	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006577	1.7302005	A	0.92125195	A	1.7519341508044	0	lncRNA	TCONS_00017489	NA	NA	NA	NA	XLOC_008118	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008118), lincRNA [TCONS_00017489]"	chrX:15250477-15250418	hs|Xp22.2	Agilent_HUMAN_G3V2	TCONS_00017489	TCONS_00017489	chrX	 15250418	 15250477	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3321324	2.9312367	A	3.2767534	P	0.787026053376317	0	lncRNA	XR_108343	XR_108343	XR_108343	   642691	Hs.631791	FLJ37786	uncharacterized LOC642691	NA	THC2480914	NA	"PREDICTED: Homo sapiens hypothetical LOC642691 (FLJ37786), miscRNA [XR_108343]"	chr2:91911303-91911244	hs|2p11.1	Agilent_HUMAN_G3V2	XR_108343	XR_108343	chr2	 91911244	 91911303	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013390	1.7996054	A	2.4496691	A	0.637252176140167	0	lncRNA	ENST00000444032	NA	NA	NA	NA	XLOC_l2_013500	NA	ENST00000444032	THC2686397	NA	"BROAD Institute lincRNA (XLOC_l2_013500), lincRNA [TCONS_l2_00027164]"	chr7:88385951-88386010	hs|7q21.13	Agilent_HUMAN_G3V2	ENST00000444032	ENST00000444032	chr7	 88385951	 88386010	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014837	0.9250722	A	0.91025746	A	1.01032170027497	0	lncRNA	ENST00000508031	XR_132696	XR_132696	NA	Hs.570765	LOC100507388	NA	ENST00000508031	THC2487580	NA	"PREDICTED: Homo sapiens hypothetical LOC100507388 (LOC100507388), miscRNA [XR_132696]"	chr4:75892555-75892496	hs|4q13.3	Agilent_HUMAN_G3V2	ENST00000508031	ENST00000508031	chr4	 75892496	 75892555	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014451	5.833188	P	5.9333386	P	0.932935599204559	0	lncRNA	XR_109874	XR_109874	XR_109874	NA	Hs.639651	LOC100287506	uncharacterized LOC100287506	NA	THC2518724	NA	"PREDICTED: Homo sapiens hypothetical LOC100287506 (LOC100287506), miscRNA [XR_109874]"	chr1:10438779-10438720	hs|1p36.22	Agilent_HUMAN_G3V2	XR_109874	XR_109874	chr1	 10438720	 10438779	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009187	5.160928	P	5.523759	P	0.777637124416982	0	lncRNA	ENST00000456090	NA	NA	NA	NA	XLOC_012408	NA	ENST00000456090	THC2660204	NA	"BROAD Institute lincRNA (XLOC_012408), lincRNA [TCONS_00025215]"	chr17:17578743-17578684	hs|17p11.2	Agilent_HUMAN_G3V2	ENST00000456090	ENST00000456090	chr17	 17578684	 17578743	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008093	1.0205162	A	1.0700754	A	0.966231505504321	0	lncRNA	TCONS_00021860	NA	NA	NA	NA	XLOC_010454	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010454), lincRNA [TCONS_00021860]"	chr13:81592578-81592799	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00021860	TCONS_00021860	chr13	 81592578	 81592799	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005774	6.2848463	P	6.4773445	P	0.875089086562488	0	lncRNA	TCONS_00014876	NA	NA	NA	NA	XLOC_006944	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006944), lincRNA [TCONS_00014876]"	chr8:142123026-142123085	hs|8q24.3	Agilent_HUMAN_G3V2	TCONS_00014876	TCONS_00014876	chr8	142123026	142123085	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_37641_PI429285431	0.928484	A	1.5673218	A	0.642230105385781	0	lncRNA	38735-1_{1..897}	n346119|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1669|NULL|-1.5271600|-0.1018072	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,"	>n346119|NULL|lincRNA|Homosapiens|HumanlincRNA|ScriptureReconstructionLincRNAsByLuo[unpublished]|linc_luo_1669|NULL|-1.5271600|-0.1018072	chr3	195704070	195704966	-	NA	NA	NA	NA	NA	NA	NA	inter
LNCA_21_P0006404	3.273324	P	3.2331307	P	1.02825158807577	0	lncRNA	AK127697	NA	AK127697	NA	Hs.550772	XLOC_007966	NA	NA	THC2518512	NA	"BROAD Institute lincRNA (XLOC_007966), lincRNA [TCONS_00016932]"	chrX:45386425-45386484	hs|Xp11.3	Agilent_HUMAN_G3V2	AK127697	AK127697	chrX	 45386425	 45386484	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006385	0.9209797	A	0.9188841	A	1.00145361470673	0	lncRNA	TCONS_00016843	NA	NA	NA	NA	XLOC_007800	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007800), lincRNA [TCONS_00016843]"	chr9:100654264-100654205	hs|9q22.33	Agilent_HUMAN_G3V2	TCONS_00016843	TCONS_00016843	chr9	100654205	100654264	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0003488	0.92115575	A	2.5064673	A	0.333252695580742	0	lncRNA	ENST00000504082	NA	NA	NA	NA	XLOC_004032	NA	ENST00000504082	NA	NA	"BROAD Institute lincRNA (XLOC_004032), lincRNA [TCONS_00007807]"	chr4:106058774-106058715	hs|4q24	Agilent_HUMAN_G3V2	ENST00000504082	ENST00000504082	chr4	106058715	106058774	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011987	0.92126024	A	1.3877766	A	0.723710014261499	0	lncRNA	TCONS_l2_00015074	NA	NA	NA	NA	XLOC_l2_008409	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008409), lincRNA [TCONS_l2_00015074]"	chr2:201576387-201576328	hs|2q33.1	Agilent_HUMAN_G3V2	TCONS_l2_00015074	TCONS_l2_00015074	chr2	201576328	201576387	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005761	0.92341626	A	0.91193676	A	1.00798872398041	0	lncRNA	TCONS_00014851	NA	NA	NA	NA	XLOC_006916	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006916), lincRNA [TCONS_00014851]"	chr8:125963491-125963550	hs|8q24.13	Agilent_HUMAN_G3V2	TCONS_00014851	TCONS_00014851	chr8	125963491	125963550	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005343	1.6458263	A	1.8319238	A	0.878980155799322	0	lncRNA	TCONS_00013285	NA	NA	NA	NA	XLOC_005952	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005952), lincRNA [TCONS_00013285]"	chr7:80793-80852	hs|7p22.3	Agilent_HUMAN_G3V2	TCONS_00013285	TCONS_00013285	chr7	    80793	    80852	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008721	2.663353	A	2.2726905	A	1.31099528780767	0	lncRNA	TCONS_00023628	NA	NA	NA	NA	XLOC_011428	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011428), lincRNA [TCONS_00023628]"	chr15:37656462-37656403	hs|15q14	Agilent_HUMAN_G3V2	TCONS_00023628	TCONS_00023628	chr15	 37656403	 37656462	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0013642	1.0174967	A	0.92013675	A	1.06981397138712	0	lncRNA	TCONS_l2_00029318	NA	NA	NA	NA	XLOC_l2_015205	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_015205), lincRNA [TCONS_l2_00029318]"	chr9:67239190-67239131	hs|9q13	Agilent_HUMAN_G3V2	TCONS_l2_00029318	TCONS_l2_00029318	chr9	 67239131	 67239190	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014429	1.8601892	A	0.9537852	A	1.87436770218598	0	lncRNA	ENST00000462631	XR_109729	XR_109729	NA	NA	PHF21B	PHD finger protein 21B	ENST00000462631	THC2647886	GO:0008270|GO:0046872	"PREDICTED: Homo sapiens hypothetical LOC100506695 (LOC100506695), miscRNA [XR_109729]"	chr22:45367224-45367165	hs|22q13.31	Agilent_HUMAN_G3V2	ENST00000462631	ENST00000462631	chr22	 45367165	 45367224	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005865	3.777595	P	4.298985	P	0.696700256715823	0	lncRNA	TCONS_00015067	NA	NA	NA	NA	XLOC_007145	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007145), lincRNA [TCONS_00015067]"	chr8:88938433-88938374	hs|8q21.3	Agilent_HUMAN_G3V2	TCONS_00015067	TCONS_00015067	chr8	 88938374	 88938433	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014759	5.1506286	P	5.39222	P	0.845811804224675	0	lncRNA	XR_132523	XR_132523	XR_132523	NA	Hs.675959	LOC100506458	putative uncharacterized protein LOC65996-like	NA	THC2485056	NA	"PREDICTED: Homo sapiens putative uncharacterized protein LOC65996-like (LOC100506458), miscRNA [XR_132523]"	chr7:157058664-157058723	hs|7q36.3	Agilent_HUMAN_G3V2	XR_132523	XR_132523	chr7	157058664	157058723	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009348	3.5170836	P	3.028191	A	1.40336724986867	0	lncRNA	TCONS_00025733	NA	NA	NA	NA	XLOC_012552	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012552), lincRNA [TCONS_00025733]"	chr17:65039455-65039396	hs|17q24.2	Agilent_HUMAN_G3V2	TCONS_00025733	TCONS_00025733	chr17	 65039396	 65039455	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004291	1.0052173	A	2.26948	A	0.416312072370945	0	lncRNA	TCONS_00010081	NA	NA	NA	NA	XLOC_004539	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004539), lincRNA [TCONS_00010081]"	chr5:125531318-125531377	hs|5q23.2	Agilent_HUMAN_G3V2	TCONS_00010081	TCONS_00010081	chr5	125531318	125531377	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006548	8.388872	P	7.930053	P	1.37441625098722	0	lncRNA	TCONS_00017366	NA	NA	NA	NA	XLOC_008225	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_008225), lincRNA [TCONS_00017366]"	chrX:119374131-119358289	hs|Xq24	Agilent_HUMAN_G3V2	TCONS_00017366	TCONS_00017366	chrX	119358289	119374131	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008388	2.3323443	A	2.5706112	A	0.847763113115906	0	lncRNA	TCONS_00022630	NA	NA	NA	NA	XLOC_010931	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010931), lincRNA [TCONS_00022630]"	chr14:101155444-101155503	hs|14q32.2	Agilent_HUMAN_G3V2	TCONS_00022630	TCONS_00022630	chr14	101155444	101155503	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012442	0.98568964	A	0.91338277	A	1.05139652373291	0	lncRNA	TCONS_l2_00019332	NA	NA	NA	NA	XLOC_l2_010225	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_010225), lincRNA [TCONS_l2_00019332]"	chr3:63727910-63727851	hs|3p14.1	Agilent_HUMAN_G3V2	TCONS_l2_00019332	TCONS_l2_00019332	chr3	 63727851	 63727910	-	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_38686_PI429285431	5.3706384	P	5.524404	P	0.898901162544234	0	lncRNA	39684-1_{1..2316}	n384078|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zob.1||5.5204900|-0.1172254	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NONCODERv3	"NONCODERv3,UCSC,"	>n384078|NULL|lncRNA|Homosapiens||UCSCGeneNoncode|uc002zob.1||5.5204900|-0.1172254	chr22	 18761201	 18763516	-	NA	NA	NA	NA	LOC100132900	NA	chr22:18781949-18802992	inter
LNCA_21_P0004609	1.4081262	A	1.9699059	A	0.677465930111662	0	lncRNA	AK097853	NA	AK097853	NA	Hs.582798	LOC285857	uncharacterized LOC285857	NA	THC2648993	NA	"BROAD Institute lincRNA (XLOC_005730), lincRNA [TCONS_00011216]"	chr6:43813053-43812994	hs|6p21.1	Agilent_HUMAN_G3V2	AK097853	AK097853	chr6	 43812994	 43813053	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005204	3.968166	P	3.9069145	P	1.04337046481484	0	lncRNA	TCONS_00012933	NA	NA	NA	NA	XLOC_005953	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005953), lincRNA [TCONS_00012933]"	chr7:152687-152746	hs|7p22.3	Agilent_HUMAN_G3V2	TCONS_00012933	TCONS_00012933	chr7	   152687	   152746	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00317564	0.9837346	A	1.0471408	A	0.957001970244117	0	lncRNA	ENST00000450294	NA	NA	NA	NA	XLOC_001512	NA	ENST00000450294	THC2685043	NA	"BROAD Institute lincRNA (XLOC_001512), lincRNA [TCONS_00002927]"	chr2:67488124-67488183	hs|2p14	Agilent_HUMAN_G3V2	ENST00000450294	ENST00000450294	chr2	 67488124	 67488183	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008466	1.5978175	A	0.915722	A	1.60446853787632	0	lncRNA	TCONS_00022805	NA	NA	NA	NA	XLOC_011082	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_011082), lincRNA [TCONS_00022805]"	chr14:78122487-78122428	hs|14q24.3	Agilent_HUMAN_G3V2	TCONS_00022805	TCONS_00022805	chr14	 78122428	 78122487	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012763	4.8616195	P	5.374256	P	0.700940310513016	0	lncRNA	ENST00000513681	NA	BC092460	NA	Hs.519164	XLOC_l2_011007	NA	ENST00000513681	THC2773681	NA	"BROAD Institute lincRNA (XLOC_l2_011007), lincRNA [TCONS_l2_00020977]"	chr4:190582465-190582524	hs|4q35.2	Agilent_HUMAN_G3V2	ENST00000513681	ENST00000513681	chr4	190582465	190582524	+	NA	NA	NA	NA	NA	NA	NA	Unknown
CUST_874_PI429285431	1.2920883	A	1.5203099	A	0.853686576853695	0	lncRNA	865-4_{9001..12000}	"transcript_id ""ENST00000418539.1"" | genecode_v17"	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	gencode_v17	"gencode_v17,lncipedia2.1,NONCODERv3,ensembl.GRCh37.72,ncbi,"	">transcript_id ""ENST00000418539.1"" | genecode_v17"	chr2	 47567199	 47570198	+	ENSG00000236824.1	ENST00000418539.1	BCYRN1	BCYRN1-001	NA	"hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0,hg19_refFlat_CAGE1:range=chr6:7329398-73874065'pad=0 3'pad=0 strand=- repeatMasking=none,-79.80;hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0,hg19_refFlat_ZNF829:range=chr19:37382394-374068565'pad=0 3'pad=0 strand=- repeatMasking=none,-74.70;hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0,hg19_refFlat_IFT20:range=chr17:26655748-266590115'pad=0 3'pad=0 strand=- repeatMasking=none,-30.20;hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0,hg19_refFlat_OR1J1:range=chr9:125239237-1252402055'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0,hg19_refFlat_PODXL:range=chr7:131189070-1312411185'pad=0 3'pad=0 strand=- repeatMasking=none,-83.20;hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0,hg19_refFlat_OSTC:range=chr4:109571812-1095884135'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0,hg19_refFlat_BRD2:range=chr6_mann_hap4:4397903-44057165'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0,hg19_refFlat_ZNF701:range=chr19:53075495-530867105'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.30;hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0,hg19_refFlat_TUBGCP2:range=chr10:135093270-1351164455'pad=0 3'pad=0 strand=- repeatMasking=none,-76.90;hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0,hg19_refFlat_HSD11B1L:range=chr19:5684044-56879565'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0,hg19_refFlat_SLC30A6:range=chr2:32390970-324457825'pad=0 3'pad=0 strand=+ repeatMasking=none,-41.20;hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0,hg19_refFlat_NEK4:range=chr3:52745793-528047625'pad=0 3'pad=0 strand=- repeatMasking=none,-86.70;hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0,hg19_refFlat_RGS3:range=chr9:116222537-1163592335'pad=0 3'pad=0 strand=+ repeatMasking=none,-72.60;hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0,hg19_refFlat_C9orf37:range=chr9:140510121-1405106515'pad=0 3'pad=0 strand=- repeatMasking=none,-75.40;hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0,hg19_refFlat_YIF1B:range=chr19:38796129-388065575'pad=0 3'pad=0 strand=- repeatMasking=none,-77.20;hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100384895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0,hg19_refFlat_ANKDD1A:range=chr15:65204130-652495275'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.00;hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0,hg19_refFlat_TSFM:range=chr12:58176585-581903665'pad=0 3'pad=0 strand=+ repeatMasking=none,-52.40;hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0,hg19_refFlat_ST6GAL2:range=chr2:107429598-1074604335'pad=0 3'pad=0 strand=- repeatMasking=none,-83.70;hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0,hg19_refFlat_PKP2:range=chr12:32945358-330496655'pad=0 3'pad=0 strand=- repeatMasking=none,-84.80;hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0,hg19_refFlat_SYT14:range=chr1:210111596-2103343875'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.00;hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0,hg19_refFlat_ANO6:range=chr12:45610105-458337215'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.30;hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0,hg19_refFlat_MYL10:range=chr7:101256755-1012723985'pad=0 3'pad=0 strand=- repeatMasking=none,-80.20;hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0,hg19_refFlat_ITCH:range=chr20:32981618-330955995'pad=0 3'pad=0 strand=+ repeatMasking=none,-77.80;hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0,hg19_refFlat_RQCD1:range=chr2:219433678-2194589995'pad=0 3'pad=0 strand=+ repeatMasking=none,-39.30;hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100383975'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.60;hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0,hg19_refFlat_UBE2J2:range=chr1:1190583-12033725'pad=0 3'pad=0 strand=- repeatMasking=none,-40.80;hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0,hg19_refFlat_AMBRA1:range=chr11:46419000-465699305'pad=0 3'pad=0 strand=- repeatMasking=none,-52.40;hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0,hg19_refFlat_USP4:range=chr3:49349800-493774575'pad=0 3'pad=0 strand=- repeatMasking=none,-80.50;hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0,hg19_refFlat_ASCC1:range=chr10:73862127-739730565'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0,hg19_refFlat_TCEANC:range=chrX:13677806-136816835'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.20;hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0,hg19_refFlat_PPIP5K1:range=chr15:43826872-438767025'pad=0 3'pad=0 strand=- repeatMasking=none,-47.30;hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0,hg19_refFlat_UGT2A1:range=chr4:70455090-705133625'pad=0 3'pad=0 strand=- repeatMasking=none,-83.10;hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0,hg19_refFlat_LYRM4:range=chr6:5187029-52609665'pad=0 3'pad=0 strand=- repeatMasking=none,-88.90;hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0,hg19_refFlat_KCNRG:range=chr13:50589630-505943635'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.30;hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0,hg19_refFlat_THEMIS:range=chr6:128031130-1282220775'pad=0 3'pad=0 strand=- repeatMasking=none,-43.01;hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0,hg19_refFlat_CSF2RA:range=chrX:1401597-14283725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0,hg19_refFlat_ZNF573:range=chr19:38229393-382492365'pad=0 3'pad=0 strand=- repeatMasking=none,-78.20;hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0,hg19_refFlat_BRD2:range=chr6_dbb_hap3:4226965-42298365'pad=0 3'pad=0 strand=+ repeatMasking=none,-48.00;hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0,hg19_refFlat_FAM122C:range=chrX:133941629-1339434035'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.60;hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0,hg19_refFlat_CYB561D1:range=chr1:110036762-1100388815'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.70;hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0,hg19_refFlat_ZMAT1:range=chrX:101138482-1011736065'pad=0 3'pad=0 strand=- repeatMasking=none,-86.50;hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0,hg19_refFlat_SLC4A8:range=chr12:51844689-518740065'pad=0 3'pad=0 strand=+ repeatMasking=none,-87.80;hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0,hg19_refFlat_SUGT1:range=chr13:53227056-532619705'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0,hg19_refFlat_ZNF410:range=chr14:74358879-743915065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.50;hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0,hg19_refFlat_NXNL2:range=chr9:91150350-911861075'pad=0 3'pad=0 strand=+ repeatMasking=none,-83.40;hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0,hg19_refFlat_LOC100507462:range=chr6:139048604-1390946875'pad=0 3'pad=0 strand=- repeatMasking=none,-83.60;hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0,hg19_refFlat_JAM2:range=chr21:27012134-270866175'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.40;hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0,hg19_refFlat_RAD51:range=chr15:40990957-410233765'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.50;hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0,hg19_refFlat_LOC100506688:range=chr5:989429-9899595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.80;hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0,hg19_refFlat_MLLT10:range=chr10:21823574-218456065'pad=0 3'pad=0 strand=+ repeatMasking=none,-81.10;hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0,hg19_refFlat_SEPP1:range=chr5:42800822-428108695'pad=0 3'pad=0 strand=- repeatMasking=none,-76.30;hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0,hg19_refFlat_CASP7:range=chr10:115457253-1154891835'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.80;hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0,hg19_refFlat_NOP2:range=chr12:6666159-66770845'pad=0 3'pad=0 strand=- repeatMasking=none,-83.30;hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0,hg19_refFlat_ZNF283:range=chr19:44337657-443527935'pad=0 3'pad=0 strand=+ repeatMasking=none,-85.40;hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0,hg19_refFlat_DUOXA1:range=chr15:45409713-454152125'pad=0 3'pad=0 strand=- repeatMasking=none,-87.30;hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2319907715'pad=0 3'pad=0 strand=+ repeatMasking=none,-88.00;hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0,hg19_refFlat_SLC3A2:range=chr11:62623742-626561655'pad=0 3'pad=0 strand=+ repeatMasking=none,-76.60;hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0,hg19_refFlat_BCAS4:range=chr20:49411531-494930725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.00;hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0,hg19_refFlat_ADRA1A:range=chr8:26606107-267224865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0,hg19_refFlat_ZNF91:range=chr19:23542205-235781565'pad=0 3'pad=0 strand=- repeatMasking=none,-94.30;hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0,hg19_refFlat_ZNF493:range=chr19:21580040-215903305'pad=0 3'pad=0 strand=+ repeatMasking=none,-68.00;hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83677162-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-81.20;hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0,hg19_refFlat_BRD2:range=chr6_qbl_hap6:4172820-41806325'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78227386-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0,hg19_refFlat_REL:range=chr2:61108976-611496705'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.80;hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0,hg19_refFlat_NPC1L1:range=chr7:44553046-445808585'pad=0 3'pad=0 strand=- repeatMasking=none,-80.70;hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0,hg19_refFlat_WDR27:range=chr6:169857687-1700891015'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0,hg19_refFlat_MTO1:range=chr6:74171578-742104585'pad=0 3'pad=0 strand=+ repeatMasking=none,-36.60;hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0,hg19_refFlat_PPIL3:range=chr2:201736118-2017523385'pad=0 3'pad=0 strand=- repeatMasking=none,-80.30;hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0,hg19_refFlat_BRD2:range=chr6:32940676-329484955'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0,hg19_refFlat_FBLIM1:range=chr1:16091479-161015265'pad=0 3'pad=0 strand=+ repeatMasking=none,-90.50;hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0,hg19_refFlat_CSF2RA:range=chrY:1351597-13783725'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.50;hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0,hg19_refFlat_DISC1:range=chr1:231762614-2321725775'pad=0 3'pad=0 strand=+ repeatMasking=none,-56.60;hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0,hg19_refFlat_IL6R:range=chr1:154378106-1544100205'pad=0 3'pad=0 strand=+ repeatMasking=none,-78.30;hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0,hg19_refFlat_CNGA1:range=chr4:47938438-479731175'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50;hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0,hg19_refFlat_SLC36A3:range=chr5:150656954-1506829155'pad=0 3'pad=0 strand=- repeatMasking=none,-56.40;hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0,hg19_refFlat_ZNF700:range=chr19:12037391-120610685'pad=0 3'pad=0 strand=+ repeatMasking=none,-89.40;hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0,hg19_refFlat_BRD2:range=chr6_mcf_hap5:4277541-42838425'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0,hg19_refFlat_TRIM5:range=chr11:5685318-57014075'pad=0 3'pad=0 strand=- repeatMasking=none,-73.40;hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0,hg19_refFlat_C15orf40:range=chr15:83659385-836803595'pad=0 3'pad=0 strand=- repeatMasking=none,-83.40;hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0,hg19_refFlat_GINS3:range=chr16:58426506-584386335'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.30;hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0,hg19_refFlat_BCL2L11:range=chr2:111881323-1118878125'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.10;hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0,hg19_refFlat_TMEM230:range=chr20:5081437-50936745'pad=0 3'pad=0 strand=- repeatMasking=none,-74.00;hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0,hg19_refFlat_ADAMTS2:range=chr5:178578130-1787723295'pad=0 3'pad=0 strand=- repeatMasking=none,-76.00;hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0,hg19_refFlat_BIRC5:range=chr17:76210398-762196355'pad=0 3'pad=0 strand=+ repeatMasking=none,-80.50;hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0,hg19_refFlat_BRD2:range=chr6_ssto_hap7:4421448-44292735'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0,hg19_refFlat_NOS3:range=chr7:150690892-1507004915'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.40;hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0,hg19_refFlat_BTG3:range=chr21:18966411-189814625'pad=0 3'pad=0 strand=- repeatMasking=none,-87.20;hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0,hg19_refFlat_ZNF410:range=chr14:74364945-743982125'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0,hg19_refFlat_MAP4K1:range=chr19:39078450-391085355'pad=0 3'pad=0 strand=- repeatMasking=none,-89.50;hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0,hg19_refFlat_NANOGNB:range=chr12:7917882-79264475'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.90;hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0,hg19_refFlat_ZNF429:range=chr19:21688574-217208805'pad=0 3'pad=0 strand=+ repeatMasking=none,-84.60;hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0,hg19_refFlat_TEX11:range=chrX:69748945-701173965'pad=0 3'pad=0 strand=- repeatMasking=none,-82.80;hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0,hg19_refFlat_ISY1:range=chr3:128848924-1288798185'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0,hg19_refFlat_UTY:range=chrY:15434994-155915455'pad=0 3'pad=0 strand=- repeatMasking=none,-80.90;hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0,hg19_refFlat_C8orf44:range=chr8:67589944-675921895'pad=0 3'pad=0 strand=+ repeatMasking=none,-79.90;hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0,hg19_refFlat_LOC100144595:range=chr2:155294103-1553023685'pad=0 3'pad=0 strand=- repeatMasking=none,-94.00;hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0,hg19_refFlat_C14orf178:range=chr14:78235743-782360215'pad=0 3'pad=0 strand=+ repeatMasking=none,-86.90;hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0,hg19_refFlat_BRD2:range=chr6_cox_hap2:4385214-43930395'pad=0 3'pad=0 strand=+ repeatMasking=none,-82.30;hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0,hg19_refFlat_STAP2:range=chr19:4324130-43387505'pad=0 3'pad=0 strand=- repeatMasking=none,-82.30;hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0,hg19_refFlat_FAM76A:range=chr1:28052592-280870925'pad=0 3'pad=0 strand=+ repeatMasking=none,-47.10;hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0,hg19_refFlat_PRR16:range=chr5:119816899-1200224045'pad=0 3'pad=0 strand=+ repeatMasking=none,-74.50;hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0,hg19_refFlat_TBXA2R:range=chr19:3594834-36006325'pad=0 3'pad=0 strand=- repeatMasking=none,-83.80;hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0,hg19_refFlat_MRPL10:range=chr17:45901571-459065865'pad=0 3'pad=0 strand=- repeatMasking=none,-84.70;hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0,hg19_refFlat_IL12RB1:range=chr19:18182019-181976335'pad=0 3'pad=0 strand=- repeatMasking=none,-87.50"	NA	inter
LNCA_21_P0011563	3.0154607	A	2.8411949	A	1.12839001121306	0	lncRNA	TCONS_l2_00011028	NA	NA	NA	NA	XLOC_l2_005933	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005933), lincRNA [TCONS_l2_00011028]"	chr17:81058211-81058270	hs|17q25.3	Agilent_HUMAN_G3V2	TCONS_l2_00011028	TCONS_l2_00011028	chr17	 81058211	 81058270	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_33_P3325763	5.167325	P	5.8205295	P	0.635866363817503	0	lncRNA	XR_109680	XR_109680	XR_109680	    54083	Hs.542533	C21orf30	chromosome 21 open reading frame 30	NA	THC2481057	GO:0005634	"PREDICTED: Homo sapiens chromosome 21 open reading frame 30 (C21orf30), miscRNA [XR_109680]"	chr21:45880396-45880455	hs|21q22.3	Agilent_HUMAN_G3V2	XR_109680	XR_109680	chr21	 45880396	 45880455	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001476	0.9229888	A	0.9143441	A	1.00601003767084	0	lncRNA	TCONS_00001415	NA	NA	NA	NA	XLOC_000733	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_000733), lincRNA [TCONS_00001415]"	chr1:22744789-22744730	hs|1p36.12	Agilent_HUMAN_G3V2	TCONS_00001415	TCONS_00001415	chr1	 22744730	 22744789	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0010752	1.9308292	A	1.9146659	A	1.01126654057812	0	lncRNA	ENST00000435300	NA	NA	NA	NA	XLOC_l2_000727	NA	ENST00000435300	NA	NA	"BROAD Institute lincRNA (XLOC_l2_000727), lincRNA [TCONS_l2_00002393]"	chr1:752766-745505	hs|1p36.33	Agilent_HUMAN_G3V2	ENST00000435300	ENST00000435300	chr1	   745505	   752766	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014133	1.0062991	A	0.91663474	A	1.06412258774695	0	lncRNA	XR_108540	XR_108540	XR_108540	NA	Hs.729911	LOC100507292	uncharacterized LOC100507292	ENST00000512574	THC2511371	NA	"PREDICTED: Homo sapiens hypothetical LOC100507292 (LOC100507292), miscRNA [XR_108540]"	chr4:5891417-5891358	hs|4p16.2	Agilent_HUMAN_G3V2	XR_108540	XR_108540	chr4	  5891358	  5891417	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002374	3.256075	P	3.8531637	P	0.661086656289575	0	lncRNA	TCONS_00004060	NA	NA	NA	NA	XLOC_001908	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001908), lincRNA [TCONS_00004060]"	chr2:238121312-238121371	hs|2q37.3	Agilent_HUMAN_G3V2	TCONS_00004060	TCONS_00004060	chr2	238121312	238121371	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_32_P79492	1.3156383	A	2.8296125	A	0.35014534188403	0	lncRNA	XR_113193	XR_113193	XR_113193	100508233	NA	LOC100508233	uncharacterized LOC100508233	NA	THC2478733	NA	"PREDICTED: Homo sapiens hypothetical LOC100508233, transcript variant 2 (LOC100508233), miscRNA [XR_113193]"	chr8:143761505-143761446	hs|8q24.3	Agilent_HUMAN_G3V2	XR_113193	XR_113193	chr8	143761446	143761505	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0009458	0.92280364	A	0.9303784	A	0.994763335844849	0	lncRNA	TCONS_00026288	NA	NA	NA	NA	XLOC_012630	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_012630), lincRNA [TCONS_00026288]"	chr18:12224332-12224391	hs|18p11.21	Agilent_HUMAN_G3V2	TCONS_00026288	TCONS_00026288	chr18	 12224332	 12224391	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012070	8.031175	P	7.899679	P	1.09542901565433	0	lncRNA	ENST00000448204	NA	NA	NA	NA	XLOC_l2_008047	NA	ENST00000448204	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008047), lincRNA [TCONS_l2_00015820]"	chr2:64557679-64557620	hs|2p14	Agilent_HUMAN_G3V2	ENST00000448204	ENST00000448204	chr2	 64557620	 64557679	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0012292	0.9240939	A	0.9132309	A	1.00755807697995	0	lncRNA	XR_109751	XR_109751	XR_109751	NA	Hs.542766	LOC388882	uncharacterized LOC388882	NA	THC2488554	NA	"PREDICTED: Homo sapiens hypothetical LOC388882 (LOC388882), miscRNA [XR_109751]"	chr22:23804342-23804283	hs|22q11.23	Agilent_HUMAN_G3V2	XR_109751	XR_109751	chr22	 23804283	 23804342	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002183	0.9250064	A	0.9123192	A	1.00883287857932	0	lncRNA	TCONS_00003598	NA	NA	NA	NA	XLOC_001386	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001386), lincRNA [TCONS_00003598]"	chr2:21268724-21268783	hs|2p24.1	Agilent_HUMAN_G3V2	TCONS_00003598	TCONS_00003598	chr2	 21268724	 21268783	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007632	0.96836346	A	1.5486885	A	0.668813076456818	0	lncRNA	TCONS_00020576	NA	NA	NA	NA	XLOC_009892	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009892), lincRNA [TCONS_00020576]"	chr12:115453481-115532915	hs|12q24.21	Agilent_HUMAN_G3V2	TCONS_00020576	TCONS_00020576	chr12	115453481	115532915	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007677	4.7190137	P	5.272159	P	0.681532660109824	0	lncRNA	TCONS_00020668	NA	NA	NA	NA	XLOC_009974	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009974), lincRNA [TCONS_00020668]"	chr12:1762651-1762592	hs|12p13.33	Agilent_HUMAN_G3V2	TCONS_00020668	TCONS_00020668	chr12	  1762592	  1762651	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0004325	3.5978634	P	3.5116882	P	1.06155211535961	0	lncRNA	TCONS_00010162	NA	NA	NA	NA	XLOC_004625	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_004625), lincRNA [TCONS_00010162]"	chr5:163151167-163158299	hs|5q34	Agilent_HUMAN_G3V2	TCONS_00010162	TCONS_00010162	chr5	163151167	163158299	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011523	3.586659	P	4.1250744	P	0.688526744842966	0	lncRNA	TCONS_l2_00010604	NA	NA	NA	NA	XLOC_l2_005692	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_005692), lincRNA [TCONS_l2_00010604]"	chr17:19529343-19529402	hs|17p11.2	Agilent_HUMAN_G3V2	TCONS_l2_00010604	TCONS_l2_00010604	chr17	 19529343	 19529402	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002274	2.4551902	A	2.2068377	A	1.18784986318062	0	lncRNA	TCONS_00003825	NA	NA	NA	NA	XLOC_001637	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_001637), lincRNA [TCONS_00003825]"	chr2:118802258-118802317	hs|2q14.2	Agilent_HUMAN_G3V2	TCONS_00003825	TCONS_00003825	chr2	118802258	118802317	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0006084	0.9235342	A	0.9144137	A	1.00634187392304	0	lncRNA	AK094988	NA	AK094988	NA	Hs.584108	LOC497256	uncharacterized LOC497256	ENST00000411992	THC2509358	NA	"BROAD Institute lincRNA (XLOC_007760), lincRNA [TCONS_00015840]"	chr9:90463093-90463034	hs|9q22.1	Agilent_HUMAN_G3V2	AK094988	AK094988	chr9	 90463034	 90463093	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011031	1.0017163	A	0.91165185	A	1.06441773248202	0	lncRNA	ENST00000513207	NA	BC039514	NA	Hs.407574	XLOC_l2_002729	NA	ENST00000513207	THC2612143	NA	"BROAD Institute lincRNA (XLOC_l2_002729), lincRNA [TCONS_l2_00005385]"	chr11:78135832-78135773	hs|11q14.1	Agilent_HUMAN_G3V2	ENST00000513207	ENST00000513207	chr11	 78135773	 78135832	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0007551	1.8998702	A	1.0609393	A	1.7887241279416	0	lncRNA	TCONS_00020406	NA	NA	NA	NA	XLOC_009734	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_009734), lincRNA [TCONS_00020406]"	chr12:48615810-48619721	hs|12q13.11	Agilent_HUMAN_G3V2	TCONS_00020406	TCONS_00020406	chr12	 48615810	 48619721	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005019	1.0242712	A	2.3132668	A	0.409235838900438	0	lncRNA	TCONS_00012136	NA	NA	NA	NA	XLOC_005668	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_005668), lincRNA [TCONS_00012136]"	chr6:29446881-29444483	hs|6p22.1	Agilent_HUMAN_G3V2	TCONS_00012136	TCONS_00012136	chr6	 29444483	 29446881	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005926	0.9819014	A	1.2019582	A	0.858531634729539	0	lncRNA	TCONS_00015234	NA	NA	NA	NA	XLOC_006723	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_006723), lincRNA [TCONS_00015234]"	chr8:13489500-13489559	hs|8p22	Agilent_HUMAN_G3V2	TCONS_00015234	TCONS_00015234	chr8	 13489500	 13489559	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0002004	1.0177515	A	0.920035	A	1.0700783996271	0	lncRNA	ENST00000448901	NA	BC044918	NA	Hs.434407	XLOC_001962	NA	ENST00000448901	THC2612698	NA	"BROAD Institute lincRNA (XLOC_001962), lincRNA [TCONS_00003175]"	chr2:6506221-6506162	hs|2p25.2	Agilent_HUMAN_G3V2	ENST00000448901	ENST00000448901	chr2	  6506162	  6506221	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011730	5.161554	P	5.7978067	P	0.643381920101875	0	lncRNA	TCONS_l2_00012941	NA	NA	NA	NA	XLOC_l2_006973	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_006973), lincRNA [TCONS_l2_00012941]"	chr19:22697271-22697212	hs|19p12	Agilent_HUMAN_G3V2	TCONS_l2_00012941	TCONS_l2_00012941	chr19	 22697212	 22697271	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00811751	5.1336045	P	4.999971	P	1.09705320848927	0	lncRNA	AK055081	NA	AK055081	NA	NA	XLOC_010376	NA	NA	THC2515632	NA	"BROAD Institute lincRNA (XLOC_010376), lincRNA [TCONS_00021548]"	chr13:45949444-45949503	hs|13q14.13	Agilent_HUMAN_G3V2	AK055081	AK055081	chr13	 45949444	 45949503	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0014916	4.681773	P	5.3111925	P	0.646436470891495	0	lncRNA	XR_133082	XR_133082	XR_133082	NA	NA	LOC100509507	putative uncharacterized protein C14orf165-like	NA	NA	NA	"PREDICTED: Homo sapiens putative uncharacterized protein C14orf165-like (LOC100509507), miscRNA [XR_133082]"	chr15:78910288-78910229	hs|15q25.1	Agilent_HUMAN_G3V2	XR_133082	XR_133082	chr15	 78910229	 78910288	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011162	2.6988525	A	1.9284735	A	1.70571782149897	0	lncRNA	TCONS_l2_00006994	NA	NA	NA	NA	XLOC_l2_003843	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_003843), lincRNA [TCONS_l2_00006994]"	chr13:106370953-106371012	hs|13q33.2	Agilent_HUMAN_G3V2	TCONS_l2_00006994	TCONS_l2_00006994	chr13	106370953	106371012	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0005850	0.9520561	A	0.9118668	A	1.02824873716097	0	lncRNA	TCONS_00015029	NA	NA	NA	NA	XLOC_007108	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_007108), lincRNA [TCONS_00015029]"	chr8:67095087-67095028	hs|8q13.1	Agilent_HUMAN_G3V2	TCONS_00015029	TCONS_00015029	chr8	 67095028	 67095087	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0008089	0.9556408	A	0.91201735	A	1.03069926646466	0	lncRNA	TCONS_00021854	NA	NA	NA	NA	XLOC_010448	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_010448), lincRNA [TCONS_00021854]"	chr13:80369339-80369398	hs|13q31.1	Agilent_HUMAN_G3V2	TCONS_00021854	TCONS_00021854	chr13	 80369339	 80369398	+	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0011937	6.699758	P	7.19688	P	0.7085187805697	0	lncRNA	TCONS_l2_00014712	NA	NA	NA	NA	XLOC_l2_008140	NA	NA	NA	NA	"BROAD Institute lincRNA (XLOC_l2_008140), lincRNA [TCONS_l2_00014712]"	chr2:96500763-96500704	hs|2q11.1	Agilent_HUMAN_G3V2	TCONS_l2_00014712	TCONS_l2_00014712	chr2	 96500704	 96500763	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_21_P0001996	1.0132308	A	0.91863096	A	1.06776920006658	0	lncRNA	ENST00000442831	NA	NA	NA	NA	XLOC_001955	NA	ENST00000442831	NA	NA	"BROAD Institute lincRNA (XLOC_001955), lincRNA [TCONS_00003166]"	chr2:4184365-4184306	hs|2p25.3	Agilent_HUMAN_G3V2	ENST00000442831	ENST00000442831	chr2	  4184306	  4184365	-	NA	NA	NA	NA	NA	NA	NA	Unknown
LNCA_19_P00322895	5.570068	P	6.43712	P	0.548266032426966	0	lncRNA	ENST00000473756	XR_108458	XR_108458	NA	NA	XLOC_002736	0	ENST00000473756	THC2615048	NA	"PREDICTED: Homo sapiens hypothetical LOC100506377 (LOC100506377), miscRNA [XR_108458]"	chr3:98701685-98701744	hs|3q12.1	Agilent_HUMAN_G3V2	ENST00000473756	ENST00000473756	chr3	 98701685	 98701744	+	NA	NA	NA	NA	NA	NA	NA	Unknown
